chr1 12009955 12009955 1 + C T rs7529452 12009955 + 12009935 12009975 41 GAGGATCTGGTCATTCTCTTCGCAGACAGGTAGGTGGGTCA GAGGATCTGGTCATTCTCTTTGCAGACAGGTAGGTGGGTCA Direct Loss 1 0.550409589449126 1 0.919054985046387 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12009955 chr1:12009955 synonymous SNV . 0 21 hm5C_associated_SNPs_6 2 0 1 0 1 PLOD1 chr1:12009963 5'GT 12009963 Upstream 9bp
chr1 22331999 22331999 1 + C A rs60166197 22331999 + 22331979 22332019 41 ACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGAC ACGTGTGGCGGTAGCCTCATAGCCCCCGATTGGGTTGTGAC Direct Loss 1 0.469356155668211 1 0.410890281200409 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331999 chr1:22331999 synonymous SNV . 0 21 hm5C_associated_SNPs_12 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 60bp
chr1 22331999 22331999 1 + C A rs60166197 22331999 + 22331979 22332019 41 ACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGAC ACGTGTGGCGGTAGCCTCATAGCCCCCGATTGGGTTGTGAC Direct Loss 1 0.469356155668211 1 0.410890281200409 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331999 chr1:22331999 synonymous SNV . 0 21 hm5C_associated_SNPs_12 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 39bp
chr1 22333431 22333431 1 + C T rs149331601 22333431 + 22333411 22333451 41 CTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGG CTGGGAGATGCCGTCCAGCTTGCCTCACTCCCTCCCGCTGG Direct Loss 1 0.706873346748654 1 0.348421573638916 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333431 chr1:22333431 synonymous SNV . 0 21 hm5C_associated_SNPs_13 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 61bp
chr1 22333431 22333431 1 + C T rs149331601 22333431 + 22333411 22333451 41 CTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGG CTGGGAGATGCCGTCCAGCTTGCCTCACTCCCTCCCGCTGG Direct Loss 1 0.706873346748654 1 0.348421573638916 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333431 chr1:22333431 synonymous SNV . 0 21 hm5C_associated_SNPs_13 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 77bp
chr1 22333954 22333954 1 + C T rs74062237 22333954 + 22333934 22333974 41 AGGTGGAACTGGTGGGGTTCCACCGTGAAGAAAACCATGGT AGGTGGAACTGGTGGGGTTCTACCGTGAAGAAAACCATGGT Direct Loss 1 0.765847038470296 1 0.303509414196014 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333954 chr1:22333954 synonymous SNV . 0 21 hm5C_associated_SNPs_14 0 0 0 0 2 CELA3A chr1:22333866 3'AG 22333866 Downstream 89bp
chr1 22333954 22333954 1 + C T rs74062237 22333954 + 22333934 22333974 41 AGGTGGAACTGGTGGGGTTCCACCGTGAAGAAAACCATGGT AGGTGGAACTGGTGGGGTTCTACCGTGAAGAAAACCATGGT Direct Loss 1 0.765847038470296 1 0.303509414196014 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333954 chr1:22333954 synonymous SNV . 0 21 hm5C_associated_SNPs_14 0 0 0 0 2 CELA3A chr1:22334008 5'GT 22334008 Upstream 55bp
chr1 22336277 22336277 1 + C G rs3820285 22336277 + 22336257 22336297 41 TGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCT TGTGACCAGCTTTGTTTCTGGCTTTGGCTGCAACTTCATCT Direct Loss 1 0.0472342477386134 1 0.0215160250663757 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336277 chr1:22336277 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_15 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 74bp
chr1 22336305 22336305 1 + C T rs9187 22336305 + 22336285 22336325 41 TGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTC TGCAACTTCATCTGGAAGCCTACGGTGTTCACTCGAGTCTC Direct Loss 1 0.778733512577268 1 0.271165072917938 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336305 chr1:22336305 synonymous SNV . 0 21 hm5C_associated_SNPs_16 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 46bp
chr1 26135615 26135615 1 + C T rs34177164 26135615 + 26135595 26135635 41 GCCTGCCTGACTGCCATCAGCGACTTCTACTACACTGTGAT GCCTGCCTGACTGCCATCAGTGACTTCTACTACACTGTGAT Direct Loss 1 0.248048278636271 1 0.0870510935783386 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26135615 chr1:26135615 synonymous SNV . 0 21 hm5C_associated_SNPs_18 1 0 1 0 2 SELENON chr1:26135517 3'AG 26135517 Downstream 99bp
chr1 26135615 26135615 1 + C T rs34177164 26135615 + 26135595 26135635 41 GCCTGCCTGACTGCCATCAGCGACTTCTACTACACTGTGAT GCCTGCCTGACTGCCATCAGTGACTTCTACTACACTGTGAT Direct Loss 1 0.248048278636271 1 0.0870510935783386 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26135615 chr1:26135615 synonymous SNV . 0 21 hm5C_associated_SNPs_18 1 0 1 0 2 SELENON chr1:26135641 5'GT 26135641 Upstream 27bp
chr1 43296173 43296173 1 + C T rs33950227 43296173 + 43296153 43296193 41 TCTGGCTGCCTCATCCCTCTCGTCTTCCTCCGGCTGTCTGT TCTGGCTGCCTCATCCCTCTTGTCTTCCTCCGGCTGTCTGT Direct Loss 1 0.30303601149061 1 0.0259088277816772 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ERMAP ENSG00000164010 CDS Human protein_coding chr1:43296173 chr1:43296173 synonymous SNV . 0 21 hm5C_associated_SNPs_24 0 0 1 0 2 ERMAP chr1:43296115 3'AG 43296115 Downstream 59bp
chr1 43296173 43296173 1 + C T rs33950227 43296173 + 43296153 43296193 41 TCTGGCTGCCTCATCCCTCTCGTCTTCCTCCGGCTGTCTGT TCTGGCTGCCTCATCCCTCTTGTCTTCCTCCGGCTGTCTGT Direct Loss 1 0.30303601149061 1 0.0259088277816772 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ERMAP ENSG00000164010 CDS Human protein_coding chr1:43296173 chr1:43296173 synonymous SNV . 0 21 hm5C_associated_SNPs_24 0 0 1 0 2 ERMAP chr1:43296204 5'GT 43296204 Upstream 32bp
chr1 45116470 45116470 1 + C T rs186111768 45116470 + 45116450 45116490 41 TATCTGCCCCAGGCAGGCCTCGCCTCCAGCAGCCCCACCTG TATCTGCCCCAGGCAGGCCTTGCCTCCAGCAGCCCCACCTG Direct Loss 1 0.69642385063578 1 0.264078289270401 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF220 ENSG00000187147 UTR3 Human protein_coding chr1:45116470 chr1:45116470 . . 0 21 hm5C_associated_SNPs_25 0 0 0 0 1 RNF220 chr1:45116376 3'AG 45116376 Downstream 95bp
chr1 93297617 93297617 1 + C G rs116168890 93297617 + 93297597 93297637 41 CCTTTTCCCACCCCCTAGCGCCGCTGGGCCTGCAGGTCTCT CCTTTTCCCACCCCCTAGCGGCGCTGGGCCTGCAGGTCTCT Direct Loss 1 0.360916099492776 1 0.0547218918800354 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control RPL5 ENSG00000122406 UTR5 Human protein_coding chr1:93297617 chr1:93297617 . . 0 21 hm5C_associated_SNPs_33 1 0 1 0 1 RPL5 chr1:93297674 5'GT 93297674 Upstream 58bp
chr1 109811554 109811554 1 + C T rs368143806 109811554 + 109811534 109811574 41 TTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGG TTTGCTGGGGCCAAGCTGCCTCGCTACGAGGCCCTGCGTGG Direct Loss 1 0.146982064632592 1 0.416115701198578 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811554 chr1:109811554 synonymous SNV . 0 21 hm5C_associated_SNPs_37 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 53bp
chr1 109811554 109811554 1 + C T rs368143806 109811554 + 109811534 109811574 41 TTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGG TTTGCTGGGGCCAAGCTGCCTCGCTACGAGGCCCTGCGTGG Direct Loss 1 0.146982064632592 1 0.416115701198578 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811554 chr1:109811554 synonymous SNV . 0 21 hm5C_associated_SNPs_37 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 77bp
chr1 111991768 111991768 1 - G A rs11548427 111991768 - 111991748 111991788 41 CGGAAGGAAACCCCACCCCCCCTAGTGCCCCCGGCGGCCCG CGGAAGGAAACCCCACCCCCTCTAGTGCCCCCGGCGGCCCG Direct Loss 1 0.244201268390215 1 0.169542759656906 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR77 ENSG00000116455 CDS Human protein_coding chr1:111991768 chr1:111991768 synonymous SNV . 0 21 hm5C_associated_SNPs_38 0 0 1 0 1 WDR77 chr1:111991677 5'GT 111991677 Upstream 92bp
chr1 146731563 146731563 1 + C T rs200538213 146731563 + 146731543 146731583 41 AGCTCCCTGCTGCATAAGACCTTGTCAGAGGTAAACTTACA AGCTCCCTGCTGCATAAGACTTTGTCAGAGGTAAACTTACA Direct Loss 1 0.215487365883824 1 0.0200057625770569 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHD1L ENSG00000131778 CDS Human protein_coding chr1:146731563 chr1:146731563 synonymous SNV . 0 21 hm5C_associated_SNPs_39 0 0 1 2 2 CHD1L chr1:146731491 3'AG 146731491 Downstream 73bp
chr1 146731563 146731563 1 + C T rs200538213 146731563 + 146731543 146731583 41 AGCTCCCTGCTGCATAAGACCTTGTCAGAGGTAAACTTACA AGCTCCCTGCTGCATAAGACTTTGTCAGAGGTAAACTTACA Direct Loss 1 0.215487365883824 1 0.0200057625770569 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHD1L ENSG00000131778 CDS Human protein_coding chr1:146731563 chr1:146731563 synonymous SNV . 0 21 hm5C_associated_SNPs_39 0 0 1 2 2 CHD1L chr1:146731572 5'GT 146731572 Upstream 10bp
chr1 154975369 154975369 1 + C T rs538492632 154975369 + 154975349 154975389 41 TGGTGGGGGACGCGCTTCTTCCCACACTGTGAGCCTCAGCA TGGTGGGGGACGCGCTTCTTTCCACACTGTGAGCCTCAGCA Direct Loss 1 0.200382201785825 1 0.66855263710022 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975369 chr1:154975369 . . 0 21 hm5C_associated_SNPs_42 0 0 0 0 2 ZBTB7B chr1:154975319 3'AG 154975319 Downstream 51bp
chr1 154975369 154975369 1 + C T rs538492632 154975369 + 154975349 154975389 41 TGGTGGGGGACGCGCTTCTTCCCACACTGTGAGCCTCAGCA TGGTGGGGGACGCGCTTCTTTCCACACTGTGAGCCTCAGCA Direct Loss 1 0.200382201785825 1 0.66855263710022 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975369 chr1:154975369 . . 0 21 hm5C_associated_SNPs_42 0 0 0 0 2 ZBTB7B chr1:154975419 5'GT 154975419 Upstream 51bp
chr1 161748056 161748056 1 + C A rs2070151 161748056 + 161748036 161748076 41 TCTGCTCTCTTTGCTGAACTCGGTTATTTCACAGACACTGA TCTGCTCTCTTTGCTGAACTAGGTTATTTCACAGACACTGA Direct Loss 1 0.326899424123546 1 0.163087248802185 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161748056 chr1:161748056 synonymous SNV . 0 21 hm5C_associated_SNPs_47 0 0 1 0 2 ATF6 chr1:161748034 3'AG 161748034 Downstream 23bp
chr1 161748056 161748056 1 + C A rs2070151 161748056 + 161748036 161748076 41 TCTGCTCTCTTTGCTGAACTCGGTTATTTCACAGACACTGA TCTGCTCTCTTTGCTGAACTAGGTTATTTCACAGACACTGA Direct Loss 1 0.326899424123546 1 0.163087248802185 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161748056 chr1:161748056 synonymous SNV . 0 21 hm5C_associated_SNPs_47 0 0 1 0 2 ATF6 chr1:161748110 5'GT 161748110 Upstream 55bp
chr1 200811203 200811203 1 + C T rs188044529 200811203 + 200811183 200811223 41 TTGTACAGCCTCGTGTTGTTCGTCCACAAGGAGGTAATCAA TTGTACAGCCTCGTGTTGTTTGTCCACAAGGAGGTAATCAA Direct Loss 1 0.134450711366344 1 0.305178046226501 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200811203 chr1:200811203 nonsynonymous SNV 0.992 0 21 hm5C_associated_SNPs_49 0 0 1 0 1 CAMSAP2 chr1:200811215 5'GT 200811215 Upstream 13bp
chr1 201185660 201185660 1 + C A rs563943429 201185660 + 201185640 201185680 41 CTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCGGA CTGCCTCCGCTGGCGGCCCCAAAGGGACAATGGGGGCCGGA Direct Loss 1 0.481576241134173 1 0.708577692508698 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185660 chr1:201185660 nonsynonymous SNV 0.309 5 21 hm5C_associated_SNPs_50 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 79bp
chr1 201966541 201966541 1 + C T rs79980228 201966541 + 201966521 201966561 41 CCTGCCTGCTAGCTGGGGACCGCTCCTTGGCAGATGTCATC CCTGCCTGCTAGCTGGGGACTGCTCCTTGGCAGATGTCATC Direct Loss 1 0.211520923908531 1 0.0988190770149231 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNPEP ENSG00000176393 CDS Human protein_coding chr1:201966541 chr1:201966541 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_51 0 0 1 0 1 RNPEP chr1:201966447 3'AG 201966447 Downstream 95bp
chr1 228526011 228526011 1 + C T rs11577699 228526011 + 228525991 228526031 41 CTGTCACCTGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCC CTGTCACCTGAGTGGGGGGCTGCTGAGGCCCCTGAGTTCCC Direct Loss 1 0.0656955523986192 1 0.522692263126373 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526011 chr1:228526011 synonymous SNV . 0 21 hm5C_associated_SNPs_57 0 0 0 0 2 OBSCN chr1:228525991 3'AG 228525991 Downstream 21bp
chr1 228526011 228526011 1 + C T rs11577699 228526011 + 228525991 228526031 41 CTGTCACCTGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCC CTGTCACCTGAGTGGGGGGCTGCTGAGGCCCCTGAGTTCCC Direct Loss 1 0.0656955523986192 1 0.522692263126373 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526011 chr1:228526011 synonymous SNV . 0 21 hm5C_associated_SNPs_57 0 0 0 0 2 OBSCN chr1:228526073 5'GT 228526073 Upstream 63bp
chr2 27157542 27157542 1 + C T rs151073506 27157542 + 27157522 27157562 41 CCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG CCACGCGGCTGCCTATGTCATGGTGCCTCCCCTGAGACTGG Direct Loss 1 0.394601718669534 1 0.675000786781311 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157542 chr2:27157542 nonsynonymous SNV 0.975 3 21 hm5C_associated_SNPs_62 0 0 0 0 2 DPYSL5 chr2:27157446 3'AG 27157446 Downstream 97bp
chr2 27157542 27157542 1 + C T rs151073506 27157542 + 27157522 27157562 41 CCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG CCACGCGGCTGCCTATGTCATGGTGCCTCCCCTGAGACTGG Direct Loss 1 0.394601718669534 1 0.675000786781311 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157542 chr2:27157542 nonsynonymous SNV 0.975 3 21 hm5C_associated_SNPs_62 0 0 0 0 2 DPYSL5 chr2:27157602 5'GT 27157602 Upstream 61bp
chr2 54858664 54858664 1 + C T rs2229503 54858664 + 54858644 54858684 41 CTCCACAAGATGTGGGAGAACAGACAAAATCTCCTATCCCA CTCCACAAGATGTGGGAGAATAGACAAAATCTCCTATCCCA Direct Loss 1 0.288459089962923 1 0.43649023771286 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54858664 chr2:54858664 synonymous SNV . 0 21 hm5C_associated_SNPs_66 0 0 1 0 1 SPTBN1 chr2:54858748 5'GT 54858748 Upstream 85bp
chr2 64068312 64068312 1 + C T rs181097784 64068312 + 64068292 64068332 41 ACTTTCAGCCTGCGAGCCTTCTTCCCGGGGCGCCATAAACG ACTTTCAGCCTGCGAGCCTTTTTCCCGGGGCGCCATAAACG Direct Loss 1 0.275869008732281 1 0.0949519872665405 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UGP2 ENSG00000169764 UTR5 Human protein_coding chr2:64068312 chr2:64068312 . . 0 21 hm5C_associated_SNPs_67 0 0 1 0 1 UGP2 chr2:64068366 5'GT 64068366 Upstream 55bp
chr2 99772851 99772851 1 + C G rs187804121 99772851 + 99772831 99772871 41 ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGGC ATTCTCCTGCCTCAGCCTCCGGAGTAGCTGAGATTACAGGC Direct Loss 1 0.56250877541515 1 0.683369994163513 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772851 chr2:99772851 . . 0 21 hm5C_associated_SNPs_70 0 0 0 0 2 LIPT1 chr2:99772764 3'AG 99772764 Downstream 88bp
chr2 99772851 99772851 1 + C G rs187804121 99772851 + 99772831 99772871 41 ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGGC ATTCTCCTGCCTCAGCCTCCGGAGTAGCTGAGATTACAGGC Direct Loss 1 0.56250877541515 1 0.683369994163513 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772851 chr2:99772851 . . 0 21 hm5C_associated_SNPs_70 0 0 0 0 2 LIPT1 chr2:99772889 5'GT 99772889 Upstream 39bp
chr2 216190020 216190020 1 + C G rs2372536 216190020 + 216190000 216190040 41 AGTGGCTTCTCCAGGTGTAACTGTTGAGGAGGCTGTGGAGC AGTGGCTTCTCCAGGTGTAAGTGTTGAGGAGGCTGTGGAGC Direct Loss 1 0.384591612396512 1 0.296683967113495 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216190020 chr2:216190020 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_78 0 0 1 0 1 ATIC chr2:216190052 5'GT 216190052 Upstream 33bp
chr2 216960884 216960884 1 + C G rs148746587 216960884 + 216960864 216960904 41 GAGAAAACAGATGAGGAGCCCGGAGAATCAGAAGGTGGAGA GAGAAAACAGATGAGGAGCCGGGAGAATCAGAAGGTGGAGA Direct Loss 1 0.560304671388027 1 0.567528665065765 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM169 ENSG00000163449 CDS Human protein_coding chr2:216960884 chr2:216960884 synonymous SNV . 0 21 hm5C_associated_SNPs_79 0 0 0 0 1 TMEM169 chr2:216960957 5'GT 216960957 Upstream 74bp
chr3 14487265 14487265 1 + C T rs2228585 14487265 + 14487245 14487285 41 TTTATTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTT TTTATTTTCCTGTTTGGGAGTGGCCTGCCTGTGTTTTTCTT Direct Loss 1 0.229866455497195 1 0.367685973644257 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487265 chr3:14487265 synonymous SNV . 0 21 hm5C_associated_SNPs_92 0 0 1 1 2 SLC6A6 chr3:14487225 3'AG 14487225 Downstream 41bp
chr3 14487265 14487265 1 + C T rs2228585 14487265 + 14487245 14487285 41 TTTATTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTT TTTATTTTCCTGTTTGGGAGTGGCCTGCCTGTGTTTTTCTT Direct Loss 1 0.229866455497195 1 0.367685973644257 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487265 chr3:14487265 synonymous SNV . 0 21 hm5C_associated_SNPs_92 0 0 1 1 2 SLC6A6 chr3:14487359 5'GT 14487359 Upstream 95bp
chr3 45565503 45565503 1 + C T rs143838895 45565503 + 45565483 45565523 41 CCTTAGCAAGCCTCTCAGAGCGTCATTCTCCACAGCCCCGA CCTTAGCAAGCCTCTCAGAGTGTCATTCTCCACAGCCCCGA Direct Loss 1 0.551988631373439 1 0.0562140047550201 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LARS2 ENSG00000011376 CDS Human protein_coding chr3:45565503 chr3:45565503 synonymous SNV . 0 21 hm5C_associated_SNPs_95 1 0 1 0 2 LARS2 chr3:45565489 3'AG 45565489 Downstream 15bp
chr3 45565503 45565503 1 + C T rs143838895 45565503 + 45565483 45565523 41 CCTTAGCAAGCCTCTCAGAGCGTCATTCTCCACAGCCCCGA CCTTAGCAAGCCTCTCAGAGTGTCATTCTCCACAGCCCCGA Direct Loss 1 0.551988631373439 1 0.0562140047550201 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LARS2 ENSG00000011376 CDS Human protein_coding chr3:45565503 chr3:45565503 synonymous SNV . 0 21 hm5C_associated_SNPs_95 1 0 1 0 2 LARS2 chr3:45565600 5'GT 45565600 Upstream 98bp
chr3 128998028 128998028 1 + C T rs563170047 128998028 + 128998008 128998048 41 CCGGGGAGCAGAGTCCGGAGCGGGATCCGCGGCCCACAGGT CCGGGGAGCAGAGTCCGGAGTGGGATCCGCGGCCCACAGGT Direct Loss 1 0.893472279199251 1 0.88223135471344 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HMCES ENSG00000183624 UTR5 Human protein_coding chr3:128998028 chr3:128998028 . . 0 21 hm5C_associated_SNPs_97 0 0 1 0 2 HMCES chr3:128998046 5'GT 128998046 Upstream 19bp
chr3 128998028 128998028 1 + C T rs563170047 128998028 + 128998008 128998048 41 CCGGGGAGCAGAGTCCGGAGCGGGATCCGCGGCCCACAGGT CCGGGGAGCAGAGTCCGGAGTGGGATCCGCGGCCCACAGGT Direct Loss 1 0.893472279199251 1 0.88223135471344 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HMCES ENSG00000183624 UTR5 Human protein_coding chr3:128998028 chr3:128998028 . . 0 21 hm5C_associated_SNPs_97 0 0 1 0 2 HMCES chr3:128998054 5'GT 128998054 Upstream 27bp
chr3 148562309 148562309 1 + C T rs147755306 148562309 + 148562289 148562329 41 ATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGT ATCCAAGTGACAGAGCTTCTTGACAAGTTAGACTTTTATGT Direct Loss 1 0.754582549804105 1 0.266809195280075 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562309 chr3:148562309 synonymous SNV . 0 21 hm5C_associated_SNPs_98 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 45bp
chr3 148562309 148562309 1 + C T rs147755306 148562309 + 148562289 148562329 41 ATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGT ATCCAAGTGACAGAGCTTCTTGACAAGTTAGACTTTTATGT Direct Loss 1 0.754582549804105 1 0.266809195280075 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562309 chr3:148562309 synonymous SNV . 0 21 hm5C_associated_SNPs_98 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 67bp
chr3 172470001 172470001 1 + C A rs549759531 172470001 + 172469981 172470021 41 ACGATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAG ACGATCTCGGCTCACTGCAAACTCTGCCTCCCGGGTTCAAG Direct Loss 1 0.0633510833573368 1 0.0320764183998108 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ECT2 ENSG00000114346 UTR5 Human protein_coding chr3:172470001 chr3:172470001 . . 0 21 hm5C_associated_SNPs_101 0 0 0 0 1 ECT2 chr3:172469940 3'AG 172469940 Downstream 62bp
chr3 193336676 193336676 1 + C T rs34307082 193336676 + 193336656 193336696 41 AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATCGTG AGGTTCTCCGGAAGAAACGGTGTTTAGAGCAACAGATCGTG Direct Loss 1 0.0516646716317907 1 0.0363451540470123 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336676 chr3:193336676 nonsynonymous SNV 0.973 1 21 hm5C_associated_SNPs_107 2 0 0 0 2 OPA1 chr3:193336658 3'AG 193336658 Downstream 19bp
chr3 193336676 193336676 1 + C T rs34307082 193336676 + 193336656 193336696 41 AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATCGTG AGGTTCTCCGGAAGAAACGGTGTTTAGAGCAACAGATCGTG Direct Loss 1 0.0516646716317907 1 0.0363451540470123 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336676 chr3:193336676 nonsynonymous SNV 0.973 1 21 hm5C_associated_SNPs_107 2 0 0 0 2 OPA1 chr3:193336725 5'GT 193336725 Upstream 50bp
chr4 44680721 44680721 1 + C A rs371867418 44680721 + 44680701 44680741 41 GGGCCGCGCTTCTGGTGGCCCCGGGGCCCCGGTCCGCGCCG GGGCCGCGCTTCTGGTGGCCACGGGGCCCCGGTCCGCGCCG Direct Loss 1 0.929049818479446 1 0.85442453622818 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GUF1 ENSG00000151806 CDS Human protein_coding chr4:44680721 chr4:44680721 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_113 0 0 0 0 1 GUF1 chr4:44680804 5'GT 44680804 Upstream 84bp
chr4 79440589 79440589 1 + C A rs149604281 79440589 + 79440569 79440609 41 GCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT GCCTCCTTGGAGCACCACACAGAGATGGAGTTTTCTTTCTT Direct Loss 1 0.445569326324502 1 0.309185028076172 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440589 chr4:79440589 synonymous SNV . 0 21 hm5C_associated_SNPs_115 0 0 1 0 1 FRAS1 chr4:79440635 5'GT 79440635 Upstream 47bp
chr4 126398352 126398352 1 + C G rs150804471 126398352 + 126398332 126398372 41 AGAGTTACAGTTGGAGGTATCAGATCTCTAGAACCAATCCT AGAGTTACAGTTGGAGGTATGAGATCTCTAGAACCAATCCT Direct Loss 1 0.146974980776873 1 0.712036848068237 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126398352 chr4:126398352 nonsynonymous SNV 0.628 1 21 hm5C_associated_SNPs_118 0 0 1 0 1 FAT4 chr4:126398310 3'AG 126398310 Downstream 43bp
chr5 21501804 21501804 1 + C A rs112772214 21501804 + 21501784 21501824 41 TTTGCCTTGAATCCCAGGATCCACCTTGATGTTCAGTGAAG TTTGCCTTGAATCCCAGGATACACCTTGATGTTCAGTGAAG Direct Loss 1 0.0719166341851575 1 0.0204340815544128 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21501804 chr5:21501804 . . 0 21 hm5C_associated_SNPs_122 0 0 1 0 1 GUSBP1 chr5:21501801 3'AG 21501801 Downstream 4bp
chr5 149754325 149754325 1 + C T rs114326915 149754325 + 149754305 149754345 41 GGGGAAGCGGGAGGAGGACTCGCAGAGCAGCAGCGAGGAAT GGGGAAGCGGGAGGAGGACTTGCAGAGCAGCAGCGAGGAAT Direct Loss 1 0.700206838084404 1 0.354074597358704 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754325 chr5:149754325 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_129 1 0 1 0 1 TCOF1 chr5:149754374 5'GT 149754374 Upstream 50bp
chr5 177573228 177573228 1 + C A rs138696545 177573228 + 177573208 177573248 41 AGATCTGTGAGACCTTTACCCGGGACGCCTGTTCCCTGCTG AGATCTGTGAGACCTTTACCAGGGACGCCTGTTCCCTGCTG Direct Loss 1 0.975926869450004 1 0.970840156078339 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control RMND5B ENSG00000145916 CDS Human protein_coding chr5:177573228 chr5:177573228 synonymous SNV . 0 21 hm5C_associated_SNPs_134 0 0 1 0 1 RMND5B chr5:177573280 5'GT 177573280 Upstream 53bp
chr6 29976024 29976024 1 + C G rs3765604 29976024 + 29976004 29976044 41 AACATGAGGCATAACGAGGTCCTGGGTTCTGGGCTTCTACC AACATGAGGCATAACGAGGTGCTGGGTTCTGGGCTTCTACC Direct Loss 1 0.192390456483434 1 0.425899267196655 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-J ENSG00000204622 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:29976024 chr6:29976024 . . 0 21 hm5C_associated_SNPs_201 0 0 0 0 1 HLA-J chr6:29975966 3'AG 29975966 Downstream 59bp
chr6 30887972 30887972 1 + C T rs2285319 30887972 + 30887952 30887992 41 GAGGATGGGACCATGACCTCCCTCTGCGGGGACTGGCTGCA GAGGATGGGACCATGACCTCTCTCTGCGGGGACTGGCTGCA Direct Loss 1 0.121220371930809 1 0.352237701416016 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VARS2 ENSG00000137411 CDS Human protein_coding chr6:30887972 chr6:30887972 synonymous SNV . 0 21 hm5C_associated_SNPs_202 1 0 1 0 1 VARS2 chr6:30887993 5'GT 30887993 Upstream 22bp
chr6 31602074 31602074 1 + C G rs144034863 31602074 + 31602054 31602094 41 TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATA TAAGCCTGAGGGCCCAGGCCGTCAGGCAGAGTCCAGAGATA Direct Loss 1 0.371394351726639 1 0.28546267747879 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602074 chr6:31602074 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_203 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 62bp
chr6 31602074 31602074 1 + C G rs144034863 31602074 + 31602054 31602094 41 TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATA TAAGCCTGAGGGCCCAGGCCGTCAGGCAGAGTCCAGAGATA Direct Loss 1 0.371394351726639 1 0.28546267747879 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602074 chr6:31602074 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_203 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 69bp
chr6 33239873 33239873 1 + C G rs139139654 33239873 + 33239853 33239893 41 TCTCTTCCACAGGAGGCCTACACGCCGCCGCTTGTGCTGCA TCTCTTCCACAGGAGGCCTAGACGCCGCCGCTTGTGCTGCA Direct Loss 1 0.389429180609038 1 0.560738503932953 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS18 ENSG00000231500 UTR5 Human protein_coding chr6:33239873 chr6:33239873 . . 0 21 hm5C_associated_SNPs_205 0 0 1 0 1 RPS18 chr6:33239899 5'GT 33239899 Upstream 27bp
chr6 35047313 35047313 1 + C T rs138150663 35047313 + 35047293 35047333 41 GTGAAGGCTCTGGGTTATGACGGGAACAGCCCCCCTAGCGT GTGAAGGCTCTGGGTTATGATGGGAACAGCCCCCCTAGCGT Direct Loss 1 0.939466010666552 1 0.895805239677429 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ANKS1A ENSG00000064999 CDS Human protein_coding chr6:35047313 chr6:35047313 synonymous SNV . 0 21 hm5C_associated_SNPs_206 0 0 1 0 1 ANKS1A chr6:35047293 3'AG 35047293 Downstream 21bp
chr6 44214838 44214838 1 + C G rs138561119 44214838 + 44214818 44214858 41 ACTTGGGGCACGCAGTAGCTCTCTCGAGTCACTCCGGCGCA ACTTGGGGCACGCAGTAGCTGTCTCGAGTCACTCCGGCGCA Direct Loss 1 0.330520728069283 1 0.13472905755043 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSP90AB1 ENSG00000096384 UTR5 Human protein_coding chr6:44214838 chr6:44214838 . . 0 21 hm5C_associated_SNPs_211 0 0 1 0 1 HSP90AB1 chr6:44214932 5'GT 44214932 Upstream 95bp
chr6 56955006 56955006 1 + C A rs550274742 56955006 + 56954986 56955026 41 ATTCGTGGCGACGGCGGCGGCAGGGACAGCAGGAGCAGTGG ATTCGTGGCGACGGCGGCGGAAGGGACAGCAGGAGCAGTGG Direct Loss 1 0.864139091613629 1 0.822603106498718 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF451 ENSG00000112200 UTR5 Human protein_coding chr6:56955006 chr6:56955006 . . 0 21 hm5C_associated_SNPs_212 0 0 1 0 1 ZNF451 chr6:56955072 5'GT 56955072 Upstream 67bp
chr6 74493537 74493537 1 + C T rs138465270 74493537 + 74493517 74493557 41 GGGTCTTGGACTAACAACTACTCCAGTGGAGGTATTGTATT GGGTCTTGGACTAACAACTATTCCAGTGGAGGTATTGTATT Direct Loss 1 0.638318752433771 1 0.804312944412231 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CD109 ENSG00000156535 CDS Human protein_coding chr6:74493537 chr6:74493537 nonsynonymous SNV 0.082 0 21 hm5C_associated_SNPs_213 0 0 0 0 1 CD109 chr6:74493547 5'GT 74493547 Upstream 11bp
chr6 108487936 108487936 1 + C T rs17840265 108487936 + 108487916 108487956 41 GCCGGCCGGGACTCGGGCAGCGCCCACCAACCGCTCCGCCC GCCGGCCGGGACTCGGGCAGTGCCCACCAACCGCTCCGCCC Direct Loss 1 0.718624401304962 1 0.364727199077606 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR2E1 ENSG00000112333 UTR5 Human protein_coding chr6:108487936 chr6:108487936 . . 0 21 hm5C_associated_SNPs_216 0 0 0 0 1 NR2E1 chr6:108487994 5'GT 108487994 Upstream 59bp
chr6 158492660 158492660 1 + C T rs146694394 158492660 + 158492640 158492680 41 AGCCATCGACACAGTGAAGACGGGCATGGGGGGCAAGGCGG AGCCATCGACACAGTGAAGATGGGCATGGGGGGCAAGGCGG Direct Loss 1 0.717576810007461 1 0.684053301811218 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158492660 chr6:158492660 nonsynonymous SNV 0.972 4 21 hm5C_associated_SNPs_219 0 0 1 0 1 SYNJ2 chr6:158492634 3'AG 158492634 Downstream 27bp
chr6 159181716 159181716 1 + C G rs138798431 159181716 + 159181696 159181736 41 CCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAAGCTGGT CCTCAGAGTAATGGAGAGCTGACAGTCCGGGCTAAGCTGGT Direct Loss 1 0.596528988995005 1 0.187914073467255 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159181716 chr6:159181716 synonymous SNV . 0 21 hm5C_associated_SNPs_220 0 0 0 0 2 SYTL3 chr6:159181672 3'AG 159181672 Downstream 45bp
chr6 159181716 159181716 1 + C G rs138798431 159181716 + 159181696 159181736 41 CCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAAGCTGGT CCTCAGAGTAATGGAGAGCTGACAGTCCGGGCTAAGCTGGT Direct Loss 1 0.596528988995005 1 0.187914073467255 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159181716 chr6:159181716 synonymous SNV . 0 21 hm5C_associated_SNPs_220 0 0 0 0 2 SYTL3 chr6:159181777 5'GT 159181777 Upstream 62bp
chr6 170176647 170176647 1 + C T rs4716399 170176647 + 170176627 170176667 41 CTGGTTGTGCTCCGAAGCATCAGCGAACAGTGCCGCCGTGT CTGGTTGTGCTCCGAAGCATTAGCGAACAGTGCCGCCGTGT Direct Loss 1 0.85035935243197 1 0.754449427127838 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ERMARD ENSG00000130023 CDS Human protein_coding chr6:170176647 chr6:170176647 synonymous SNV . 0 21 hm5C_associated_SNPs_221 1 0 0 0 1 ERMARD chr6:170176551 3'AG 170176551 Downstream 97bp
chr7 819711 819711 1 + C T rs140641290 819711 + 819691 819731 41 TCCTACTATCAGAGCAGTGTCCAGTACCTGTACCGAGAGTT TCCTACTATCAGAGCAGTGTTCAGTACCTGTACCGAGAGTT Direct Loss 1 0.151472654158313 1 0.353435873985291 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:819711 chr7:819711 synonymous SNV . 0 21 hm5C_associated_SNPs_222 0 0 1 0 1 DNAAF5 chr7:819781 5'GT 819781 Upstream 71bp
chr7 2394991 2394991 1 + C T rs11551167 2394991 + 2394971 2395011 41 GAACCCCGGGCGCTGGAGAACGGCGACGCGGACGAGCCCTC GAACCCCGGGCGCTGGAGAATGGCGACGCGGACGAGCCCTC Direct Loss 1 0.913307232388523 1 0.856040596961975 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2394991 chr7:2394991 synonymous SNV . 0 21 hm5C_associated_SNPs_224 0 0 1 0 1 EIF3B chr7:2395055 5'GT 2395055 Upstream 65bp
chr7 2395008 2395008 1 + C T rs545964398 2395008 + 2394988 2395028 41 GAACGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAGG GAACGGCGACGCGGACGAGCTCTCCTTCAGCGACCCCGAGG Direct Loss 1 0.159293491773088 1 0.141182154417038 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395008 chr7:2395008 nonsynonymous SNV 0.946 1 21 hm5C_associated_SNPs_225 0 0 1 0 1 EIF3B chr7:2395055 5'GT 2395055 Upstream 48bp
chr7 5230037 5230037 1 + C T rs542906466 5230037 + 5230017 5230057 41 TCCCCGGCCGGGCCCACTCGCCGCGCGCCCAGCCATGAACC TCCCCGGCCGGGCCCACTCGTCGCGCGCCCAGCCATGAACC Direct Loss 1 0.636616824737751 1 0.655033230781555 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WIPI2 ENSG00000157954 UTR5 Human protein_coding chr7:5230037 chr7:5230037 . . 0 21 hm5C_associated_SNPs_228 0 0 1 0 1 WIPI2 chr7:5230124 5'GT 5230124 Upstream 88bp
chr7 30634661 30634661 1 + C A rs1049402 30634661 + 30634641 30634681 41 CCCTCAGCGCGGCCTCCTGCCCCCCGATCTCCTTGCCCGCC CCCTCAGCGCGGCCTCCTGCACCCCGATCTCCTTGCCCGCC Direct Loss 1 0.397790883281591 1 0.0171894133090973 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GARS ENSG00000106105 CDS Human protein_coding chr7:30634661 chr7:30634661 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_230 0 0 1 0 1 GARS chr7:30634759 5'GT 30634759 Upstream 99bp
chr7 38217965 38217965 1 + C T rs546943699 38217965 + 38217945 38217985 41 CCCTCAGGCCGGGGCGCGACCGCGGATCCGCAGTTCCCGGG CCCTCAGGCCGGGGCGCGACTGCGGATCCGCAGTTCCCGGG Direct Loss 1 0.948001952225641 1 0.916872799396515 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient STARD3NL ENSG00000010270 UTR5 Human protein_coding chr7:38217965 chr7:38217965 . . 0 21 hm5C_associated_SNPs_231 0 0 1 0 1 STARD3NL chr7:38218022 5'GT 38218022 Upstream 58bp
chr7 56136260 56136260 1 + C A rs4245575 56136260 + 56136240 56136280 41 CCAGACAGCAGAGATGGTGACGGGCCTGTGCGGGAGGCGAC CCAGACAGCAGAGATGGTGAAGGGCCTGTGCGGGAGGCGAC Direct Loss 1 0.609253473053035 1 0.727080047130585 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUMF2 ENSG00000129103 CDS Human protein_coding chr7:56136260 chr7:56136260 nonsynonymous SNV 0.945 1 21 hm5C_associated_SNPs_234 0 0 1 0 2 SUMF2 chr7:56136175 3'AG 56136175 Downstream 86bp
chr7 56136260 56136260 1 + C A rs4245575 56136260 + 56136240 56136280 41 CCAGACAGCAGAGATGGTGACGGGCCTGTGCGGGAGGCGAC CCAGACAGCAGAGATGGTGAAGGGCCTGTGCGGGAGGCGAC Direct Loss 1 0.609253473053035 1 0.727080047130585 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUMF2 ENSG00000129103 CDS Human protein_coding chr7:56136260 chr7:56136260 nonsynonymous SNV 0.945 1 21 hm5C_associated_SNPs_234 0 0 1 0 2 SUMF2 chr7:56136331 5'GT 56136331 Upstream 72bp
chr7 73731906 73731906 1 + C T rs148561130 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC CCCAGCGGCCTGAAGCCCCCTGGCCGTGGGGGGAAGCACTC Direct Loss 1 0.398354946840324 1 0.269239455461502 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731906 synonymous SNV . 0 21 hm5C_associated_SNPs_237 0 0 0 0 2 CLIP2 chr7:73731810 3'AG 73731810 Downstream 97bp
chr7 73731906 73731906 1 + C T rs148561130 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC CCCAGCGGCCTGAAGCCCCCTGGCCGTGGGGGGAAGCACTC Direct Loss 1 0.398354946840324 1 0.269239455461502 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731906 synonymous SNV . 0 21 hm5C_associated_SNPs_237 0 0 0 0 2 CLIP2 chr7:73731997 5'GT 73731997 Upstream 92bp
chr7 94043239 94043239 1 + C A rs42524 94043239 + 94043219 94043259 41 GAAAAGGTGAACAGGGTCCCCCTGGTCCTCCAGGCTTCCAG GAAAAGGTGAACAGGGTCCCACTGGTCCTCCAGGCTTCCAG Direct Loss 1 0.159869404176264 1 0.110888570547104 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94043239 chr7:94043239 nonsynonymous SNV 0.970 2 21 hm5C_associated_SNPs_242 0 0 0 0 1 COL1A2 chr7:94043259 5'GT 94043259 Upstream 21bp
chr7 100861475 100861475 1 + C T rs10215517 100861475 + 100861455 100861495 41 TTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACTT TTCCGACAGTTGTGTTGTGCTAATGGTGGAGAAGAAAACTT Direct Loss 1 0.444544754872885 1 0.273062229156494 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861475 chr7:100861475 . . 0 21 hm5C_associated_SNPs_244 0 0 1 4 1 ZNHIT1 chr7:100861498 5'GT 100861498 Upstream 24bp
chr7 101916646 101916646 1 + C G rs62001055 101916646 + 101916626 101916666 41 TTTGGCCACAGGACGCTGTGCAGAGCTGCAAGTCCGTATCA TTTGGCCACAGGACGCTGTGGAGAGCTGCAAGTCCGTATCA Direct Loss 1 0.350038842241654 1 0.877869606018066 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101916646 chr7:101916646 nonsynonymous SNV 0.964 0 21 hm5C_associated_SNPs_245 0 0 0 0 1 CUX1 chr7:101916637 3'AG 101916637 Downstream 10bp
chr7 134215396 134215396 1 + C G rs138887023 134215396 + 134215376 134215416 41 CTTTTCTTTTGCCTTTCAGTCTCCTCTTGGCAAAGTGAAAG CTTTTCTTTTGCCTTTCAGTGTCCTCTTGGCAAAGTGAAAG Direct Loss 1 0.263187345566649 1 0.274149507284164 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134215396 chr7:134215396 nonsynonymous SNV 0.018 2 21 hm5C_associated_SNPs_250 0 0 0 0 1 AKR1B10 chr7:134215395 3'AG 134215395 Downstream 2bp
chr7 142458437 142458437 1 + C T rs372637371 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATGACAAGATTGTTGGGGGCTACAACTGTGA Direct Loss 1 0.218386337329235 1 0.12389749288559 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458437 synonymous SNV . 0 21 hm5C_associated_SNPs_252 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 32bp
chr7 142459703 142459703 1 + C T rs139664510 142459703 + 142459683 142459723 41 TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGA TTCATCAATGCAGCCAAGATTATCCGCCACCCCCAATACGA Direct Loss 1 0.320498880670947 1 0.0913821458816528 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459703 chr7:142459703 synonymous SNV . 0 21 hm5C_associated_SNPs_253 1 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 79bp
chr7 142459841 142459841 1 + C A rs141847266 142459841 + 142459821 142459861 41 CCAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAA CCAGCCACTGGCACGAAGTGACTCATCTCTGGCTGGGGCAA Direct Loss 1 0.395667009728339 1 0.0409862399101257 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459841 chr7:142459841 stopgain 0.095 1 21 hm5C_associated_SNPs_254 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 38bp
chr8 26223857 26223857 1 + C T rs34109536 26223857 + 26223837 26223877 41 GAATACCTCAGAAGTAAACTCTGTTCACTGTATGAAAATGA GAATACCTCAGAAGTAAACTTTGTTCACTGTATGAAAATGA Direct Loss 1 0.0919210922397649 1 0.074847549200058 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223857 chr8:26223857 synonymous SNV . 0 21 hm5C_associated_SNPs_259 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 27bp
chr8 26223857 26223857 1 + C T rs34109536 26223857 + 26223837 26223877 41 GAATACCTCAGAAGTAAACTCTGTTCACTGTATGAAAATGA GAATACCTCAGAAGTAAACTTTGTTCACTGTATGAAAATGA Direct Loss 1 0.0919210922397649 1 0.074847549200058 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223857 chr8:26223857 synonymous SNV . 0 21 hm5C_associated_SNPs_259 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 66bp
chr8 74893419 74893419 1 + C G rs61732273 74893419 + 74893399 74893439 41 GTTTCTCTTATTCTACGAGTCTGATTGGCCTTACATTTCTG GTTTCTCTTATTCTACGAGTGTGATTGGCCTTACATTTCTG Direct Loss 1 0.307973998155865 1 0.174936920404434 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM70 ENSG00000175606 CDS Human protein_coding chr8:74893419 chr8:74893419 nonsynonymous SNV 0.313 0 21 hm5C_associated_SNPs_262 2 0 1 0 1 TMEM70 chr8:74893390 3'AG 74893390 Downstream 30bp
chr8 145169204 145169204 1 + C T rs528202886 145169204 + 145169184 145169224 41 TACCCGGAGGCGGGCACGATCGAGGGCCTGGCCTCGCTGTT TACCCGGAGGCGGGCACGATTGAGGGCCTGGCCTCGCTGTT Direct Loss 1 0.81344164385729 1 0.978274703025818 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145169204 chr8:145169204 synonymous SNV . 0 21 hm5C_associated_SNPs_267 0 0 1 0 1 WDR97 chr8:145169181 3'AG 145169181 Downstream 24bp
chr8 145736472 145736472 1 + C T rs144273718 145736472 + 145736452 145736492 41 GATGGGTTGGGGCCACATCCCTGCTTCTTGCTCCTGCTCAT GATGGGTTGGGGCCACATCCTTGCTTCTTGCTCCTGCTCAT Direct Loss 1 0.686668554166399 1 0.0384301841259003 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145736472 chr8:145736472 synonymous SNV . 0 21 hm5C_associated_SNPs_268 0 0 1 0 1 MFSD3 chr8:145736374 3'AG 145736374 Downstream 99bp
chr9 20923667 20923667 1 + C A rs200166806 20923667 + 20923647 20923687 41 CCTTTTGAACAGGGAGAGTCCGGTAGTGAAAGGCAATGCGC CCTTTTGAACAGGGAGAGTCAGGTAGTGAAAGGCAATGCGC Direct Loss 1 0.55760352435029 1 0.454473912715912 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20923667 chr9:20923667 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_272 0 0 0 0 1 FOCAD chr9:20923659 3'AG 20923659 Downstream 9bp
chr9 100128003 100128003 1 + C G rs148165882 100128003 + 100127983 100128023 41 CTCTGGGAGAGCAGTGAGAACCTGCTGACAGTCGCAGAGGT CTCTGGGAGAGCAGTGAGAAGCTGCTGACAGTCGCAGAGGT Direct Loss 1 0.167781011663424 1 0.507369160652161 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100128003 chr9:100128003 nonsynonymous SNV 0.074 0 21 hm5C_associated_SNPs_275 0 0 0 1 2 CCDC180 chr9:100127955 3'AG 100127955 Downstream 49bp
chr9 100128003 100128003 1 + C G rs148165882 100128003 + 100127983 100128023 41 CTCTGGGAGAGCAGTGAGAACCTGCTGACAGTCGCAGAGGT CTCTGGGAGAGCAGTGAGAAGCTGCTGACAGTCGCAGAGGT Direct Loss 1 0.167781011663424 1 0.507369160652161 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100128003 chr9:100128003 nonsynonymous SNV 0.074 0 21 hm5C_associated_SNPs_275 0 0 0 1 2 CCDC180 chr9:100128021 5'GT 100128021 Upstream 19bp
chr9 100773572 100773572 1 + C T rs553733827 100773572 + 100773552 100773592 41 GAAGGAGAAGATGAGGAAGACGAGGACGATGAGGATGGTGA GAAGGAGAAGATGAGGAAGATGAGGACGATGAGGATGGTGA Direct Loss 1 0.631569408956401 1 0.455347210168839 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773572 chr9:100773572 synonymous SNV . 0 21 hm5C_associated_SNPs_276 0 0 1 0 2 ANP32B chr9:100773553 3'AG 100773553 Downstream 20bp
chr9 100773572 100773572 1 + C T rs553733827 100773572 + 100773552 100773592 41 GAAGGAGAAGATGAGGAAGACGAGGACGATGAGGATGGTGA GAAGGAGAAGATGAGGAAGATGAGGACGATGAGGATGGTGA Direct Loss 1 0.631569408956401 1 0.455347210168839 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773572 chr9:100773572 synonymous SNV . 0 21 hm5C_associated_SNPs_276 0 0 1 0 2 ANP32B chr9:100773671 5'GT 100773671 Upstream 100bp
chr9 100773578 100773578 1 + C T rs35618988 100773578 + 100773558 100773598 41 GAAGATGAGGAAGACGAGGACGATGAGGATGGTGAAGAAGA GAAGATGAGGAAGACGAGGATGATGAGGATGGTGAAGAAGA Direct Loss 1 0.270119338575378 1 0.0932588577270508 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773578 chr9:100773578 synonymous SNV . 0 21 hm5C_associated_SNPs_277 0 0 1 0 2 ANP32B chr9:100773553 3'AG 100773553 Downstream 26bp
chr9 100773578 100773578 1 + C T rs35618988 100773578 + 100773558 100773598 41 GAAGATGAGGAAGACGAGGACGATGAGGATGGTGAAGAAGA GAAGATGAGGAAGACGAGGATGATGAGGATGGTGAAGAAGA Direct Loss 1 0.270119338575378 1 0.0932588577270508 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773578 chr9:100773578 synonymous SNV . 0 21 hm5C_associated_SNPs_277 0 0 1 0 2 ANP32B chr9:100773671 5'GT 100773671 Upstream 94bp
chr9 103002451 103002451 1 + C T rs2491097 103002451 + 103002431 103002471 41 CGTGGTTGATGTCTTGACCTCATATGAAAGCTGCAATATAA CGTGGTTGATGTCTTGACCTTATATGAAAGCTGCAATATAA Direct Loss 1 0.152696013678458 1 0.518760621547699 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control INVS ENSG00000119509 CDS Human protein_coding chr9:103002451 chr9:103002451 nonsynonymous SNV 0.982 3 21 hm5C_associated_SNPs_278 2 0 1 0 1 INVS chr9:103002522 5'GT 103002522 Upstream 72bp
chr9 103189607 103189607 1 + C T rs563275299 103189607 + 103189587 103189627 41 CCCTGCTTGCGAGAGGAGCCCAGGCCGCCCGCCCTCGCGCC CCCTGCTTGCGAGAGGAGCCTAGGCCGCCCGCCCTCGCGCC Direct Loss 1 0.889145603435583 1 0.77401340007782 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MSANTD3 ENSG00000066697 UTR5 Human protein_coding chr9:103189607 chr9:103189607 . . 0 21 hm5C_associated_SNPs_279 0 0 1 0 1 MSANTD3 chr9:103189675 5'GT 103189675 Upstream 69bp
chr9 117092203 117092203 1 + C T rs143336597 117092203 + 117092183 117092223 41 GTATGGCGCTGTCCTGGGTTCTTACAGTCCTGAGCCTCCTA GTATGGCGCTGTCCTGGGTTTTTACAGTCCTGAGCCTCCTA Direct Loss 1 0.0776579404905014 1 0.0815901160240173 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ORM2 ENSG00000228278 CDS Human protein_coding chr9:117092203 chr9:117092203 nonsynonymous SNV 0.006 2 21 hm5C_associated_SNPs_280 0 0 0 0 1 ORM2 chr9:117092298 5'GT 117092298 Upstream 96bp
chr9 131193480 131193480 1 + C G rs59813556 131193480 + 131193460 131193500 41 AGCAGTGCCATCAGGAACCTCGGCGTAGACCTGCTCCCGGG AGCAGTGCCATCAGGAACCTGGGCGTAGACCTGCTCCCGGG Direct Loss 1 0.754377111765272 1 0.826961815357208 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131193480 chr9:131193480 synonymous SNV . 0 21 hm5C_associated_SNPs_282 0 0 1 0 1 CERCAM chr9:131193450 3'AG 131193450 Downstream 31bp
chr9 132265871 132265871 1 + C T rs548617086 132265871 + 132265851 132265891 41 CCATTCCTCATGCAGGCCATCGATGGAAATGTCAGACAGTG CCATTCCTCATGCAGGCCATTGATGGAAATGTCAGACAGTG Direct Loss 1 0.321778046455924 1 0.147253721952438 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control LINC00963 ENSG00000204054 ncRNA_exonic Human processed_transcript chr9:132265871 chr9:132265871 . . 0 21 hm5C_associated_SNPs_285 0 0 1 0 1 LINC00963 chr9:132265951 5'GT 132265951 Upstream 81bp
chr9 133577577 133577577 1 + C G rs34120870 133577577 + 133577557 133577597 41 CTGGTGAAACGGCAGAAGACCCACTTTCATGATTTGCCATG CTGGTGAAACGGCAGAAGACGCACTTTCATGATTTGCCATG Direct Loss 1 0.321157580542825 1 0.0747035145759583 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133577577 chr9:133577577 synonymous SNV . 0 21 hm5C_associated_SNPs_287 0 0 1 0 2 EXOSC2 chr9:133577521 3'AG 133577521 Downstream 57bp
chr9 133577577 133577577 1 + C G rs34120870 133577577 + 133577557 133577597 41 CTGGTGAAACGGCAGAAGACCCACTTTCATGATTTGCCATG CTGGTGAAACGGCAGAAGACGCACTTTCATGATTTGCCATG Direct Loss 1 0.321157580542825 1 0.0747035145759583 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133577577 chr9:133577577 synonymous SNV . 0 21 hm5C_associated_SNPs_287 0 0 1 0 2 EXOSC2 chr9:133577530 3'AG 133577530 Downstream 48bp
chr10 17275861 17275861 1 + C T rs4903 17275861 + 17275841 17275881 41 CTCACGGCTGCCCTGCGTGACGTACGTCAGCAATATGAAAG CTCACGGCTGCCCTGCGTGATGTACGTCAGCAATATGAAAG Direct Loss 1 0.117695486304056 1 0.041649341583252 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275861 chr10:17275861 synonymous SNV . 0 21 hm5C_associated_SNPs_295 0 0 1 1 2 VIM chr10:17275769 3'AG 17275769 Downstream 93bp
chr10 17275861 17275861 1 + C T rs4903 17275861 + 17275841 17275881 41 CTCACGGCTGCCCTGCGTGACGTACGTCAGCAATATGAAAG CTCACGGCTGCCCTGCGTGATGTACGTCAGCAATATGAAAG Direct Loss 1 0.117695486304056 1 0.041649341583252 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275861 chr10:17275861 synonymous SNV . 0 21 hm5C_associated_SNPs_295 0 0 1 1 2 VIM chr10:17275930 5'GT 17275930 Upstream 70bp
chr10 43971248 43971248 1 + C G rs11816311 43971248 + 43971228 43971268 41 GGACTCTGCTCAGAGGACCCCGTACAGAGACATGATGCTGG GGACTCTGCTCAGAGGACCCGGTACAGAGACATGATGCTGG Direct Loss 1 0.393196540805929 1 0.547388672828674 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF487 ENSG00000243660 CDS Human protein_coding chr10:43971248 chr10:43971248 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_296 0 0 0 0 2 ZNF487 chr10:43971169 3'AG 43971169 Downstream 80bp
chr10 43971248 43971248 1 + C G rs11816311 43971248 + 43971228 43971268 41 GGACTCTGCTCAGAGGACCCCGTACAGAGACATGATGCTGG GGACTCTGCTCAGAGGACCCGGTACAGAGACATGATGCTGG Direct Loss 1 0.393196540805929 1 0.547388672828674 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF487 ENSG00000243660 CDS Human protein_coding chr10:43971248 chr10:43971248 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_296 0 0 0 0 2 ZNF487 chr10:43971295 5'GT 43971295 Upstream 48bp
chr10 79800374 79800374 1 + C G rs114512325 79800374 + 79800354 79800394 41 TCTTTCTCTTGATTCACAGCCGAAGGAGTAAAGGTGCTGCA TCTTTCTCTTGATTCACAGCGGAAGGAGTAAAGGTGCTGCA Direct Loss 1 0.265344863312733 1 0.796180248260498 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS24 ENSG00000138326 CDS Human protein_coding chr10:79800374 chr10:79800374 nonsynonymous SNV 0.023 1 21 hm5C_associated_SNPs_298 0 0 1 0 1 RPS24 chr10:79800373 3'AG 79800373 Downstream 2bp
chr10 93751991 93751991 1 + C T rs151057472 93751991 + 93751971 93752011 41 ACAAGTAGGCGAGGTCCTACCCCCAAAGCAGTAAAAGCTCA ACAAGTAGGCGAGGTCCTACTCCCAAAGCAGTAAAAGCTCA Direct Loss 1 0.71209472472694 1 0.732267498970032 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93751991 chr10:93751991 synonymous SNV . 0 21 hm5C_associated_SNPs_300 0 0 1 0 1 BTAF1 chr10:93752066 5'GT 93752066 Upstream 76bp
chr10 112631685 112631685 1 + C G rs116602666 112631685 + 112631665 112631705 41 ACAAACAGAGCGAGAAGGGCCAGAGACTCTCCGAGGCGGCG ACAAACAGAGCGAGAAGGGCGAGAGACTCTCCGAGGCGGCG Direct Loss 1 0.697761440828167 1 0.437680870294571 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDCD4 ENSG00000203497 ncRNA_intronic Human antisense chr10:112631685 chr10:112631685 . . 0 21 hm5C_associated_SNPs_306 0 0 1 0 1 PDCD4 chr10:112631776 5'GT 112631776 Upstream 92bp
chr10 127452092 127452092 1 + C T rs140023483 127452092 + 127452072 127452112 41 CAGTGCCTTCAACACGGAGCCGGTTTGTTCATTCGGTGCTT CAGTGCCTTCAACACGGAGCTGGTTTGTTCATTCGGTGCTT Direct Loss 1 0.357020004254433 1 0.358961492776871 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EDRF1 ENSG00000107938 UTR3 Human protein_coding chr10:127452092 chr10:127452092 . . 0 21 hm5C_associated_SNPs_308 0 0 0 1 1 EDRF1 chr10:127452093 5'GT 127452093 Upstream 2bp
chr11 17393604 17393604 1 + C G rs557428928 17393604 + 17393584 17393624 41 CTCTCAAGTGCATTCTGAAACACTGGAACTCCTTTGACACT CTCTCAAGTGCATTCTGAAAGACTGGAACTCCTTTGACACT Direct Loss 1 0.314542037837314 1 0.151001363992691 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NCR3LG1 ENSG00000188211 CDS Human protein_coding chr11:17393604 chr11:17393604 nonsynonymous SNV 0.752 1 21 hm5C_associated_SNPs_316 0 0 1 0 1 NCR3LG1 chr11:17393553 3'AG 17393553 Downstream 52bp
chr11 34969150 34969150 1 + C T rs34582941 34969150 + 34969130 34969170 41 GATGGAATCTTGGCCAAAATCGTGGTAAGTTTTTATTTTAA GATGGAATCTTGGCCAAAATTGTGGTAAGTTTTTATTTTAA Direct Loss 1 0.691472600926877 1 0.833375513553619 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PDHX ENSG00000110435 CDS Human protein_coding chr11:34969150 chr11:34969150 synonymous SNV . 0 21 hm5C_associated_SNPs_317 2 0 1 0 2 PDHX chr11:34969053 3'AG 34969053 Downstream 98bp
chr11 34969150 34969150 1 + C T rs34582941 34969150 + 34969130 34969170 41 GATGGAATCTTGGCCAAAATCGTGGTAAGTTTTTATTTTAA GATGGAATCTTGGCCAAAATTGTGGTAAGTTTTTATTTTAA Direct Loss 1 0.691472600926877 1 0.833375513553619 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PDHX ENSG00000110435 CDS Human protein_coding chr11:34969150 chr11:34969150 synonymous SNV . 0 21 hm5C_associated_SNPs_317 2 0 1 0 2 PDHX chr11:34969153 5'GT 34969153 Upstream 4bp
chr11 60699530 60699530 1 + C A rs180839936 60699530 + 60699510 60699550 41 GTGCGCCTTGTCACTGTGGACGGCGGGGGGGCCTTGGTGGA GTGCGCCTTGTCACTGTGGAAGGCGGGGGGGCCTTGGTGGA Direct Loss 1 0.838872444773949 1 0.783991158008575 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60699530 chr11:60699530 nonsynonymous SNV 0.089 0 21 hm5C_associated_SNPs_323 0 0 1 0 2 TMEM132A chr11:60699456 3'AG 60699456 Downstream 75bp
chr11 60699530 60699530 1 + C A rs180839936 60699530 + 60699510 60699550 41 GTGCGCCTTGTCACTGTGGACGGCGGGGGGGCCTTGGTGGA GTGCGCCTTGTCACTGTGGAAGGCGGGGGGGCCTTGGTGGA Direct Loss 1 0.838872444773949 1 0.783991158008575 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60699530 chr11:60699530 nonsynonymous SNV 0.089 0 21 hm5C_associated_SNPs_323 0 0 1 0 2 TMEM132A chr11:60699599 5'GT 60699599 Upstream 70bp
chr11 61111346 61111346 1 + C G rs35723406 61111346 + 61111326 61111366 41 AGATGCTGAAACCACTGCAGCAGCCTGGCCTAACGTGGCTG AGATGCTGAAACCACTGCAGGAGCCTGGCCTAACGTGGCTG Direct Loss 1 0.240073137974426 1 0.38386395573616 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61111346 chr11:61111346 nonsynonymous SNV 0.688 1 21 hm5C_associated_SNPs_324 0 0 1 0 1 TKFC chr11:61111328 3'AG 61111328 Downstream 19bp
chr11 61252163 61252163 1 + C T rs373143089 61252163 + 61252143 61252183 41 GCCCTTCTTCCTCCCAGGTCCGGAAGGTCCATTTCGACACC GCCCTTCTTCCTCCCAGGTCTGGAAGGTCCATTTCGACACC Direct Loss 1 0.800704767220266 1 0.742810845375061 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61252163 chr11:61252163 nonsynonymous SNV 0.968 2 21 hm5C_associated_SNPs_325 0 0 0 0 1 PPP1R32 chr11:61252160 3'AG 61252160 Downstream 4bp
chr11 63971624 63971624 1 + C G rs201396024 63971624 + 63971604 63971644 41 TGTTCATCCCCCCTTCCCTTCGCCCTCATGTGGAAAGAGGA TGTTCATCCCCCCTTCCCTTGGCCCTCATGTGGAAAGAGGA Direct Loss 1 0.375113480991846 1 0.618635535240173 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STIP1 ENSG00000168439 UTR3 Human protein_coding chr11:63971624 chr11:63971624 . . 0 21 hm5C_associated_SNPs_326 0 0 1 0 1 STIP1 chr11:63971526 3'AG 63971526 Downstream 99bp
chr11 65338930 65338930 1 + C A rs538598804 65338930 + 65338910 65338950 41 CCTCAGCCTCAGAGCTCCCCCTGGGCTCTCGACCTGCGCCC CCTCAGCCTCAGAGCTCCCCATGGGCTCTCGACCTGCGCCC Direct Loss 1 0.935564716644061 1 0.743172943592072 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SSSCA1 ENSG00000173465 CDS Human protein_coding chr11:65338930 chr11:65338930 nonsynonymous SNV 0.005 0 21 hm5C_associated_SNPs_332 0 0 0 0 1 SSSCA1 chr11:65338862 3'AG 65338862 Downstream 69bp
chr11 74329609 74329609 1 + C A rs148419916 74329609 + 74329589 74329629 41 GCTATACAATGTGCAGCTGCCGTCCCTAGAGCTCCTGCTGA GCTATACAATGTGCAGCTGCAGTCCCTAGAGCTCCTGCTGA Direct Loss 1 0.186781051894362 1 0.234381824731827 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329609 chr11:74329609 synonymous SNV . 0 21 hm5C_associated_SNPs_334 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 28bp
chr11 75110575 75110575 1 + C G rs17881757 75110575 + 75110555 75110595 41 GCCACTTCCTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGG GCCACTTCCTTTCCTTTCAGGGGAGCGCGGCGGCAAGATGG Direct Loss 1 0.674292370037141 1 0.87686961889267 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110575 chr11:75110575 . . 0 21 hm5C_associated_SNPs_335 0 0 1 0 1 RPS3 chr11:75110621 5'GT 75110621 Upstream 47bp
chr11 75280006 75280006 1 + C T rs61733248 75280006 + 75279986 75280026 41 CTCTACAACTACTACGACGACGAGAAGGAAAAGCTGCAAAT CTCTACAACTACTACGACGATGAGAAGGAAAAGCTGCAAAT Direct Loss 1 0.770487771515279 1 0.570597887039185 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75280006 chr11:75280006 synonymous SNV . 0 21 hm5C_associated_SNPs_336 2 0 1 0 1 SERPINH1 chr11:75279984 3'AG 75279984 Downstream 23bp
chr11 117152351 117152351 1 + C T rs182447283 117152351 + 117152331 117152371 41 CATATCCAGTTAGTGAGGAACGGAGCCAAGCTGAGCAGCCT CATATCCAGTTAGTGAGGAATGGAGCCAAGCTGAGCAGCCT Direct Loss 1 0.559443307204076 1 0.537027835845947 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152351 chr11:117152351 synonymous SNV . 0 21 hm5C_associated_SNPs_338 0 0 1 0 2 RNF214 chr11:117152316 3'AG 117152316 Downstream 36bp
chr11 117152351 117152351 1 + C T rs182447283 117152351 + 117152331 117152371 41 CATATCCAGTTAGTGAGGAACGGAGCCAAGCTGAGCAGCCT CATATCCAGTTAGTGAGGAATGGAGCCAAGCTGAGCAGCCT Direct Loss 1 0.559443307204076 1 0.537027835845947 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152351 chr11:117152351 synonymous SNV . 0 21 hm5C_associated_SNPs_338 0 0 1 0 2 RNF214 chr11:117152414 5'GT 117152414 Upstream 64bp
chr11 118955679 118955679 1 + C T rs589925 118955679 + 118955659 118955699 41 GGTACTCGCCGGCCGGAGCCCCCGGCTTCCCGGGGCCGGGG GGTACTCGCCGGCCGGAGCCTCCGGCTTCCCGGGGCCGGGG Direct Loss 1 0.73608368071021 1 0.776944637298584 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMBS ENSG00000256269 UTR5 Human protein_coding chr11:118955679 chr11:118955679 . . 0 21 hm5C_associated_SNPs_341 1 0 1 0 1 HMBS chr11:118955776 5'GT 118955776 Upstream 98bp
chr11 125439445 125439445 1 + C T rs569757100 125439445 + 125439425 125439465 41 CGGTGGGCTAGGGGCAGGGCCGGAGCCGCGGCGGCGGAGCT CGGTGGGCTAGGGGCAGGGCTGGAGCCGCGGCGGCGGAGCT Direct Loss 1 0.831365196071762 1 0.846306562423706 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EI24 ENSG00000149547 UTR5 Human protein_coding chr11:125439445 chr11:125439445 . . 0 21 hm5C_associated_SNPs_343 0 0 1 0 1 EI24 chr11:125439469 5'GT 125439469 Upstream 25bp
chr12 6643991 6643991 1 + C G rs1136666 6643991 + 6643971 6644011 41 CGCAGCCGAGCCACATCGCTCAGACACCATGGGGAAGGTGA CGCAGCCGAGCCACATCGCTGAGACACCATGGGGAAGGTGA Direct Loss 1 0.238546129842399 1 0.275769233703613 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GAPDH ENSG00000111640 UTR5 Human protein_coding chr12:6643991 chr12:6643991 . . 0 21 hm5C_associated_SNPs_345 0 0 1 0 2 GAPDH chr12:6643976 3'AG 6643976 Downstream 16bp
chr12 6643991 6643991 1 + C G rs1136666 6643991 + 6643971 6644011 41 CGCAGCCGAGCCACATCGCTCAGACACCATGGGGAAGGTGA CGCAGCCGAGCCACATCGCTGAGACACCATGGGGAAGGTGA Direct Loss 1 0.238546129842399 1 0.275769233703613 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GAPDH ENSG00000111640 UTR5 Human protein_coding chr12:6643991 chr12:6643991 . . 0 21 hm5C_associated_SNPs_345 0 0 1 0 2 GAPDH chr12:6644027 5'GT 6644027 Upstream 37bp
chr12 31255405 31255405 1 + C T rs77340729 31255405 + 31255385 31255425 41 GTGACAGGGGCCCTGCTCCTCTCTGTGGTTGGAGGAAAGAT GTGACAGGGGCCCTGCTCCTTTCTGTGGTTGGAGGAAAGAT Direct Loss 1 0.492232958597387 1 0.224800258874893 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31255405 chr12:31255405 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_350 0 0 0 0 1 DDX11 chr12:31255461 5'GT 31255461 Upstream 57bp
chr12 52631312 52631312 1 + C T rs184504813 52631312 + 52631292 52631332 41 GGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAAT GGTACGAAGATGAAATTAACTACCGCACAGCTGCTGAGAAT Direct Loss 1 0.633565488590344 1 0.240461885929108 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631312 chr12:52631312 nonsynonymous SNV 0.160 1 21 hm5C_associated_SNPs_352 0 0 0 0 2 KRT7 chr12:52631293 3'AG 52631293 Downstream 20bp
chr12 52631312 52631312 1 + C T rs184504813 52631312 + 52631292 52631332 41 GGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAAT GGTACGAAGATGAAATTAACTACCGCACAGCTGCTGAGAAT Direct Loss 1 0.633565488590344 1 0.240461885929108 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631312 chr12:52631312 nonsynonymous SNV 0.160 1 21 hm5C_associated_SNPs_352 0 0 0 0 2 KRT7 chr12:52631353 5'GT 52631353 Upstream 42bp
chr12 57624701 57624701 1 + C G rs73338162 57624701 + 57624681 57624721 41 GACAGGCCAGGAGAGCCTGTCGGACAGTGATCCTGAGATGT GACAGGCCAGGAGAGCCTGTGGGACAGTGATCCTGAGATGT Direct Loss 1 0.392763977552927 1 0.411809414625168 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57624701 chr12:57624701 nonsynonymous SNV 0.761 1 21 hm5C_associated_SNPs_359 0 0 1 0 1 SHMT2 chr12:57624783 5'GT 57624783 Upstream 83bp
chr12 113867026 113867026 1 + C G rs61729438 113867026 + 113867006 113867046 41 CTGGGCATTCCTGCCACCATCGTGCTCCCCGAGAGCACCTC CTGGGCATTCCTGCCACCATGGTGCTCCCCGAGAGCACCTC Direct Loss 1 0.514102102685144 1 0.350792825222015 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SDSL ENSG00000139410 CDS Human protein_coding chr12:113867026 chr12:113867026 nonsynonymous SNV 0.874 5 21 hm5C_associated_SNPs_367 0 0 0 0 2 SDSL chr12:113866965 3'AG 113866965 Downstream 62bp
chr12 113867026 113867026 1 + C G rs61729438 113867026 + 113867006 113867046 41 CTGGGCATTCCTGCCACCATCGTGCTCCCCGAGAGCACCTC CTGGGCATTCCTGCCACCATGGTGCTCCCCGAGAGCACCTC Direct Loss 1 0.514102102685144 1 0.350792825222015 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SDSL ENSG00000139410 CDS Human protein_coding chr12:113867026 chr12:113867026 nonsynonymous SNV 0.874 5 21 hm5C_associated_SNPs_367 0 0 0 0 2 SDSL chr12:113867104 5'GT 113867104 Upstream 79bp
chr14 61263067 61263067 1 + C T rs113043441 61263067 + 61263047 61263087 41 GTTGACAAGGAGGTTGAGATCAGGAAAAAAGTGCTAAAGAT GTTGACAAGGAGGTTGAGATTAGGAAAAAAGTGCTAAAGAT Direct Loss 1 0.968418069015633 1 0.799443602561951 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61263067 chr14:61263067 synonymous SNV . 0 21 hm5C_associated_SNPs_390 0 0 1 0 1 MNAT1 chr14:61263087 5'GT 61263087 Upstream 21bp
chr14 102499701 102499701 1 + C T rs75075497 102499701 + 102499681 102499721 41 GACAACCAGCAGAAGGCCAACGAGGTGGAGCAGATGATCCG GACAACCAGCAGAAGGCCAATGAGGTGGAGCAGATGATCCG Direct Loss 1 0.308522776532691 1 0.741722762584686 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102499701 chr14:102499701 synonymous SNV . 0 21 hm5C_associated_SNPs_393 2 0 1 0 1 DYNC1H1 chr14:102499606 3'AG 102499606 Downstream 96bp
chr14 105177427 105177427 1 + C T rs59751492 105177427 + 105177407 105177447 41 CCCTCCCAGGGCAGCCACACCGGTGACGCCGACGGCTTCAA CCCTCCCAGGGCAGCCACACTGGTGACGCCGACGGCTTCAA Direct Loss 1 0.459860251902584 1 0.752070784568787 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105177427 chr14:105177427 synonymous SNV . 0 21 hm5C_associated_SNPs_394 2 0 1 0 2 INF2 chr14:105177416 3'AG 105177416 Downstream 12bp
chr14 105177427 105177427 1 + C T rs59751492 105177427 + 105177407 105177447 41 CCCTCCCAGGGCAGCCACACCGGTGACGCCGACGGCTTCAA CCCTCCCAGGGCAGCCACACTGGTGACGCCGACGGCTTCAA Direct Loss 1 0.459860251902584 1 0.752070784568787 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105177427 chr14:105177427 synonymous SNV . 0 21 hm5C_associated_SNPs_394 2 0 1 0 2 INF2 chr14:105177523 5'GT 105177523 Upstream 97bp
chr15 31221493 31221493 1 + C T rs80120912 31221493 + 31221473 31221513 41 TGCAGCTGATTCATGATGCCCCCGAGGAGAGCCTGCGGGCC TGCAGCTGATTCATGATGCCTCCGAGGAGAGCCTGCGGGCC Direct Loss 1 0.846542486672243 1 0.748108863830566 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control FAN1 ENSG00000198690 CDS Human protein_coding chr15:31221493 chr15:31221493 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_397 0 0 1 0 1 FAN1 chr15:31221406 3'AG 31221406 Downstream 88bp
chr15 36989578 36989578 1 + C A rs117638434 36989578 + 36989558 36989598 41 GACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTA GACTTGCTTCTAGAGAAAAAACTGTCCTTCCTAGGTAAGTA Direct Loss 1 0.113535742317145 1 0.0911529660224915 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989578 chr15:36989578 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_399 0 0 1 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 55bp
chr15 36989578 36989578 1 + C A rs117638434 36989578 + 36989558 36989598 41 GACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTA GACTTGCTTCTAGAGAAAAAACTGTCCTTCCTAGGTAAGTA Direct Loss 1 0.113535742317145 1 0.0911529660224915 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989578 chr15:36989578 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_399 0 0 1 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 14bp
chr15 41854885 41854885 1 + C G rs56363203 41854885 + 41854865 41854905 41 ACTACGAAGATCGGGGGACCCGCTCCCTCTCCATCTGTTTT ACTACGAAGATCGGGGGACCGGCTCCCTCTCCATCTGTTTT Direct Loss 1 0.156152639024162 1 0.117382764816284 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41854885 chr15:41854885 synonymous SNV . 0 21 hm5C_associated_SNPs_400 0 0 0 0 1 TYRO3 chr15:41854916 5'GT 41854916 Upstream 32bp
chr15 43624189 43624189 1 + C T rs1549523 43624189 + 43624169 43624209 41 GGAACAGAAAAATGAGAAGACAACTCACTGGTAGAGTAACT GGAACAGAAAAATGAGAAGATAACTCACTGGTAGAGTAACT Direct Loss 1 0.235114033970076 1 0.152280211448669 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADAL ENSG00000168803 UTR5 Human protein_coding chr15:43624189 chr15:43624189 . . 0 21 hm5C_associated_SNPs_401 0 0 0 0 2 ADAL chr15:43624098 3'AG 43624098 Downstream 92bp
chr15 43624189 43624189 1 + C T rs1549523 43624189 + 43624169 43624209 41 GGAACAGAAAAATGAGAAGACAACTCACTGGTAGAGTAACT GGAACAGAAAAATGAGAAGATAACTCACTGGTAGAGTAACT Direct Loss 1 0.235114033970076 1 0.152280211448669 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADAL ENSG00000168803 UTR5 Human protein_coding chr15:43624189 chr15:43624189 . . 0 21 hm5C_associated_SNPs_401 0 0 0 0 2 ADAL chr15:43624198 5'GT 43624198 Upstream 10bp
chr15 69652440 69652440 1 + C T rs146154864 69652440 + 69652420 69652460 41 ATGCTGAGCCTGAAGCTCCCCAGGCTGTTTAGCATAGACCA ATGCTGAGCCTGAAGCTCCCTAGGCTGTTTAGCATAGACCA Direct Loss 1 0.653729408900702 1 0.798525214195251 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69652440 chr15:69652440 synonymous SNV . 0 21 hm5C_associated_SNPs_406 0 0 0 0 1 PAQR5 chr15:69652470 5'GT 69652470 Upstream 31bp
chr15 78458638 78458638 1 + C T rs2304826 78458638 + 78458618 78458658 41 TGTTTTGCTACAATTAAGGACGGAAAGGTAACAGGAATCTT TGTTTTGCTACAATTAAGGATGGAAAGGTAACAGGAATCTT Direct Loss 1 0.632990830078989 1 0.246089428663254 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IDH3A ENSG00000166411 CDS Human protein_coding chr15:78458638 chr15:78458638 synonymous SNV . 0 21 hm5C_associated_SNPs_408 0 0 1 0 1 IDH3A chr15:78458644 5'GT 78458644 Upstream 7bp
chr16 718514 718514 1 + C G rs7204542 718514 + 718494 718534 41 CCCCGCGCGGAGGAGATCACCATCCCCGCGGACGTCACCCC CCCCGCGCGGAGGAGATCACGATCCCCGCGGACGTCACCCC Direct Loss 1 0.310465503922422 1 0.577567756175995 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:718514 chr16:718514 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_415 0 0 1 0 2 RHOT2 chr16:718488 3'AG 718488 Downstream 27bp
chr16 718514 718514 1 + C G rs7204542 718514 + 718494 718534 41 CCCCGCGCGGAGGAGATCACCATCCCCGCGGACGTCACCCC CCCCGCGCGGAGGAGATCACGATCCCCGCGGACGTCACCCC Direct Loss 1 0.310465503922422 1 0.577567756175995 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:718514 chr16:718514 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_415 0 0 1 0 2 RHOT2 chr16:718569 5'GT 718569 Upstream 56bp
chr16 2011269 2011269 1 + C T rs201009092 2011269 + 2011249 2011289 41 ATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGGA ATCATGTGCATGTATGAAGCTGAAATGCAGTGGAAGAGGGA Direct Loss 1 0.602289292682753 1 0.2791468501091 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011269 chr16:2011269 synonymous SNV . 0 21 hm5C_associated_SNPs_416 0 0 1 0 1 NDUFB10 chr16:2011292 5'GT 2011292 Upstream 24bp
chr16 5128001 5128001 1 + C G rs7195893 5128001 + 5127981 5128021 41 ATGAAGCTGGGCAGCATGCACTCTCCGTTCAGGGCCCGGTA ATGAAGCTGGGCAGCATGCAGTCTCCGTTCAGGGCCCGGTA Direct Loss 1 0.353280090665212 1 0.0963397026062012 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128001 chr16:5128001 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_426 0 0 1 0 2 ALG1 chr16:5127908 3'AG 5127908 Downstream 94bp
chr16 5128001 5128001 1 + C G rs7195893 5128001 + 5127981 5128021 41 ATGAAGCTGGGCAGCATGCACTCTCCGTTCAGGGCCCGGTA ATGAAGCTGGGCAGCATGCAGTCTCCGTTCAGGGCCCGGTA Direct Loss 1 0.353280090665212 1 0.0963397026062012 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128001 chr16:5128001 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_426 0 0 1 0 2 ALG1 chr16:5128018 5'GT 5128018 Upstream 18bp
chr16 14972674 14972674 1 + C T rs541333077 14972674 + 14972654 14972694 41 TGACCCAGGACAACGGCATTCTGACATTCTCAAACCTGGTA TGACCCAGGACAACGGCATTTTGACATTCTCAAACCTGGTA Direct Loss 1 0.287931483635077 1 0.076789528131485 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972674 chr16:14972674 synonymous SNV . 0 21 hm5C_associated_SNPs_427 0 0 0 0 2 NOMO1 chr16:14972578 3'AG 14972578 Downstream 97bp
chr16 14972674 14972674 1 + C T rs541333077 14972674 + 14972654 14972694 41 TGACCCAGGACAACGGCATTCTGACATTCTCAAACCTGGTA TGACCCAGGACAACGGCATTTTGACATTCTCAAACCTGGTA Direct Loss 1 0.287931483635077 1 0.076789528131485 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972674 chr16:14972674 synonymous SNV . 0 21 hm5C_associated_SNPs_427 0 0 0 0 2 NOMO1 chr16:14972691 5'GT 14972691 Upstream 18bp
chr16 22580509 22580509 1 + C T rs546736623 22580509 + 22580489 22580529 41 GATTAACTAAGGCAGAGCTCCGGATGCTTGACAAGGATTTG GATTAACTAAGGCAGAGCTCTGGATGCTTGACAAGGATTTG Direct Loss 1 0.326124146398782 1 0.737208902835846 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LOC653786 ENSG00000257838 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:22580509 chr16:22580509 . . 0 21 hm5C_associated_SNPs_430 0 0 0 0 2 LOC653786 chr16:22580486 3'AG 22580486 Downstream 24bp
chr16 22580509 22580509 1 + C T rs546736623 22580509 + 22580489 22580529 41 GATTAACTAAGGCAGAGCTCCGGATGCTTGACAAGGATTTG GATTAACTAAGGCAGAGCTCTGGATGCTTGACAAGGATTTG Direct Loss 1 0.326124146398782 1 0.737208902835846 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LOC653786 ENSG00000257838 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:22580509 chr16:22580509 . . 0 21 hm5C_associated_SNPs_430 0 0 0 0 2 LOC653786 chr16:22580583 5'GT 22580583 Upstream 75bp
chr16 29706442 29706442 1 + C T rs200392225 29706442 + 29706422 29706462 41 GGGCTCCTGGTGGGCGGGGCCGCCTCGCACCGCTACGACCT GGGCTCCTGGTGGGCGGGGCTGCCTCGCACCGCTACGACCT Direct Loss 1 0.522602810609065 1 0.163487106561661 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29706442 chr16:29706442 synonymous SNV . 0 21 hm5C_associated_SNPs_432 0 0 1 0 1 QPRT chr16:29706520 5'GT 29706520 Upstream 79bp
chr16 29706444 29706444 1 + C T rs2303255 29706444 + 29706424 29706464 41 GCTCCTGGTGGGCGGGGCCGCCTCGCACCGCTACGACCTGG GCTCCTGGTGGGCGGGGCCGTCTCGCACCGCTACGACCTGG Direct Loss 1 0.248789426567705 1 0.389834016561508 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29706444 chr16:29706444 nonsynonymous SNV 0.221 1 21 hm5C_associated_SNPs_433 0 0 1 0 1 QPRT chr16:29706520 5'GT 29706520 Upstream 77bp
chr16 57714235 57714235 1 + C T rs141220380 57714235 + 57714215 57714255 41 GAGGTCAGACCTGAGGGGACCGTGTGCTGCTGTGACCACCT GAGGTCAGACCTGAGGGGACTGTGTGCTGCTGTGACCACCT Direct Loss 1 0.370633725495104 1 0.0604181885719299 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714235 chr16:57714235 synonymous SNV . 0 21 hm5C_associated_SNPs_440 0 0 0 0 2 ADGRG3 chr16:57714177 3'AG 57714177 Downstream 59bp
chr16 57714235 57714235 1 + C T rs141220380 57714235 + 57714215 57714255 41 GAGGTCAGACCTGAGGGGACCGTGTGCTGCTGTGACCACCT GAGGTCAGACCTGAGGGGACTGTGTGCTGCTGTGACCACCT Direct Loss 1 0.370633725495104 1 0.0604181885719299 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714235 chr16:57714235 synonymous SNV . 0 21 hm5C_associated_SNPs_440 0 0 0 0 2 ADGRG3 chr16:57714277 5'GT 57714277 Upstream 43bp
chr16 67572606 67572606 1 + C T rs140402307 67572606 + 67572586 67572626 41 TCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTC TCTTCAGCCCGCCGGGGCCCTCACGGAAGCCCCCCGCGCTC Direct Loss 1 0.483092764126393 1 0.195554226636887 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572606 chr16:67572606 nonsynonymous SNV 0.976 0 21 hm5C_associated_SNPs_441 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 44bp
chr16 67572606 67572606 1 + C T rs140402307 67572606 + 67572586 67572626 41 TCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTC TCTTCAGCCCGCCGGGGCCCTCACGGAAGCCCCCCGCGCTC Direct Loss 1 0.483092764126393 1 0.195554226636887 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572606 chr16:67572606 nonsynonymous SNV 0.976 0 21 hm5C_associated_SNPs_441 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 32bp
chr16 89627863 89627863 1 + C T rs575878848 89627863 + 89627843 89627883 41 GATGACATTCTCCGGAATCGCTGTACGGCCTTGATGAAAGC GATGACATTCTCCGGAATCGTTGTACGGCCTTGATGAAAGC Direct Loss 1 0.402021488321806 1 0.365368366241455 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human protein_coding chr16:89627863 chr16:89627863 . . 0 21 hm5C_associated_SNPs_449 0 0 1 0 1 RPL13 chr16:89627776 3'AG 89627776 Downstream 88bp
chr17 4859364 4859364 1 + C T rs2230257 4859364 + 4859344 4859384 41 CCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCAA CCCAAGAGGATTGCCCAGGCTGTTGAGAAGAAGGCCTGCAA Direct Loss 1 0.263267100538497 1 0.300458490848541 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859364 chr17:4859364 synonymous SNV . 0 21 hm5C_associated_SNPs_452 2 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 3bp
chr17 4859364 4859364 1 + C T rs2230257 4859364 + 4859344 4859384 41 CCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCAA CCCAAGAGGATTGCCCAGGCTGTTGAGAAGAAGGCCTGCAA Direct Loss 1 0.263267100538497 1 0.300458490848541 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859364 chr17:4859364 synonymous SNV . 0 21 hm5C_associated_SNPs_452 2 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 75bp
chr17 5029158 5029158 1 + C T rs578212292 5029158 + 5029138 5029178 41 TCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTC TCGGCTCTCTGCAACTTCCGTCTCCTGGGTTCAAGCAATTC Direct Loss 1 0.0660586971169535 1 0.101109623908997 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029158 chr17:5029158 . . 0 21 hm5C_associated_SNPs_454 0 0 0 0 2 USP6 chr17:5029116 3'AG 5029116 Downstream 43bp
chr17 5029158 5029158 1 + C T rs578212292 5029158 + 5029138 5029178 41 TCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTC TCGGCTCTCTGCAACTTCCGTCTCCTGGGTTCAAGCAATTC Direct Loss 1 0.0660586971169535 1 0.101109623908997 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029158 chr17:5029158 . . 0 21 hm5C_associated_SNPs_454 0 0 0 0 2 USP6 chr17:5029233 5'GT 5029233 Upstream 76bp
chr17 7479892 7479892 1 + C T rs11078698 7479892 + 7479872 7479912 41 TACATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAA TACATGGGCGCCTCCTGTCATGCCTGTATCGGGGGCACCAA Direct Loss 1 0.67851461115036 1 0.0401758253574371 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479892 chr17:7479892 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_456 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 51bp
chr17 7810512 7810512 1 + C G rs139484082 7810512 + 7810492 7810532 41 AGAAGGAGGAAGCTGAAAACCAGGAGGAAAAGCCAGAGAAG AGAAGGAGGAAGCTGAAAACGAGGAGGAAAAGCCAGAGAAG Direct Loss 1 0.879029416107202 1 0.877872467041016 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810512 chr17:7810512 nonsynonymous SNV 0.910 1 21 hm5C_associated_SNPs_458 0 0 1 0 2 CHD3 chr17:7810444 3'AG 7810444 Downstream 69bp
chr17 7810512 7810512 1 + C G rs139484082 7810512 + 7810492 7810532 41 AGAAGGAGGAAGCTGAAAACCAGGAGGAAAAGCCAGAGAAG AGAAGGAGGAAGCTGAAAACGAGGAGGAAAAGCCAGAGAAG Direct Loss 1 0.879029416107202 1 0.877872467041016 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810512 chr17:7810512 nonsynonymous SNV 0.910 1 21 hm5C_associated_SNPs_458 0 0 1 0 2 CHD3 chr17:7810565 5'GT 7810565 Upstream 54bp
chr17 15902823 15902823 1 - G C rs200004394 15902823 - 15902803 15902843 41 GAGCGCGCGAAGTACGGGACCGAGGTCGTGTGTGGCTGCGC GAGCGCGCGAAGTACGGGACGGAGGTCGTGTGTGGCTGCGC Direct Loss 1 0.900267266095562 1 0.804172158241272 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC19 ENSG00000011295;ENSG00000214941 CDS Human other chr17:15902823 chr17:15902823 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_462 2 0 1 0 1 TTC19 chr17:15902820 5'GT 15902820 Upstream 4bp
chr17 17080665 17080665 1 + C A rs200762157 17080665 + 17080645 17080685 41 AGCAGGTTGAAGGAGCAGCTCAAGGCTGCAACGGAAGCACT AGCAGGTTGAAGGAGCAGCTAAAGGCTGCAACGGAAGCACT Direct Loss 1 0.519141336704421 1 0.469192951917648 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17080665 chr17:17080665 synonymous SNV . 0 21 hm5C_associated_SNPs_463 0 0 1 0 1 MPRIP chr17:17080726 5'GT 17080726 Upstream 62bp
chr17 37358647 37358647 1 + C A rs2228666 37358647 + 37358627 37358667 41 TCCATTCCCGGGCTCGATGCCGGAAAAACACCTTGGCCCGC TCCATTCCCGGGCTCGATGCAGGAAAAACACCTTGGCCCGC Direct Loss 1 0.916179236374094 1 0.836480021476746 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358647 chr17:37358647 synonymous SNV . 0 21 hm5C_associated_SNPs_472 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 78bp
chr17 37358647 37358647 1 + C A rs2228666 37358647 + 37358627 37358667 41 TCCATTCCCGGGCTCGATGCCGGAAAAACACCTTGGCCCGC TCCATTCCCGGGCTCGATGCAGGAAAAACACCTTGGCCCGC Direct Loss 1 0.916179236374094 1 0.836480021476746 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358647 chr17:37358647 synonymous SNV . 0 21 hm5C_associated_SNPs_472 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 46bp
chr17 59482065 59482065 1 + C A rs182290035 59482065 + 59482045 59482085 41 CTCGTCGTGCGACCCTCCCCCCGCGCGGGAACCACCCACCT CTCGTCGTGCGACCCTCCCCACGCGCGGGAACCACCCACCT Direct Loss 1 0.422172098048918 1 0.396724343299866 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBX2 ENSG00000121068 CDS Human protein_coding chr17:59482065 chr17:59482065 nonsynonymous SNV 0.455 4 21 hm5C_associated_SNPs_477 0 0 0 0 2 TBX2 chr17:59481967 3'AG 59481967 Downstream 99bp
chr17 59482065 59482065 1 + C A rs182290035 59482065 + 59482045 59482085 41 CTCGTCGTGCGACCCTCCCCCCGCGCGGGAACCACCCACCT CTCGTCGTGCGACCCTCCCCACGCGCGGGAACCACCCACCT Direct Loss 1 0.422172098048918 1 0.396724343299866 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBX2 ENSG00000121068 CDS Human protein_coding chr17:59482065 chr17:59482065 nonsynonymous SNV 0.455 4 21 hm5C_associated_SNPs_477 0 0 0 0 2 TBX2 chr17:59482130 5'GT 59482130 Upstream 66bp
chr17 80012377 80012377 1 + C G rs140038239 80012377 + 80012357 80012397 41 GCCATCCTGATGGCCAGGTCCTCTCTCAGGGAGCTGCAGAA GCCATCCTGATGGCCAGGTCGTCTCTCAGGGAGCTGCAGAA Direct Loss 1 0.127109364780228 1 0.349423766136169 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GPS1 ENSG00000169727 CDS Human protein_coding chr17:80012377 chr17:80012377 synonymous SNV . 0 21 hm5C_associated_SNPs_482 0 0 0 0 1 GPS1 chr17:80012374 3'AG 80012374 Downstream 4bp
chr17 80680760 80680760 1 + C A rs191683466 80680760 + 80680740 80680780 41 CGTGCTGTGGATACCTCCCCCAGGTGAGTGCACGGCGTTTG CGTGCTGTGGATACCTCCCCAAGGTGAGTGCACGGCGTTTG Direct Loss 1 0.710676947061111 1 0.915212273597717 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80680760 chr17:80680760 nonsynonymous SNV 0.996 2 21 hm5C_associated_SNPs_484 0 0 1 0 2 FN3KRP chr17:80680680 3'AG 80680680 Downstream 81bp
chr17 80680760 80680760 1 + C A rs191683466 80680760 + 80680740 80680780 41 CGTGCTGTGGATACCTCCCCCAGGTGAGTGCACGGCGTTTG CGTGCTGTGGATACCTCCCCAAGGTGAGTGCACGGCGTTTG Direct Loss 1 0.710676947061111 1 0.915212273597717 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80680760 chr17:80680760 nonsynonymous SNV 0.996 2 21 hm5C_associated_SNPs_484 0 0 1 0 2 FN3KRP chr17:80680762 5'GT 80680762 Upstream 3bp
chr18 72167184 72167184 1 + C A rs191869036 72167184 + 72167164 72167204 41 CTTCCAAGAACCTTCGAGATCTGCGGTCTGGGGTCTGGTTG CTTCCAAGAACCTTCGAGATATGCGGTCTGGGGTCTGGTTG Direct Loss 1 0.715941176641716 1 0.066752552986145 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CNDP2 ENSG00000133313 UTR5 Human protein_coding chr18:72167184 chr18:72167184 . . 0 21 hm5C_associated_SNPs_490 0 0 1 0 3 CNDP2 chr18:72167117 3'AG 72167117 Downstream 68bp
chr18 72167184 72167184 1 + C A rs191869036 72167184 + 72167164 72167204 41 CTTCCAAGAACCTTCGAGATCTGCGGTCTGGGGTCTGGTTG CTTCCAAGAACCTTCGAGATATGCGGTCTGGGGTCTGGTTG Direct Loss 1 0.715941176641716 1 0.066752552986145 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CNDP2 ENSG00000133313 UTR5 Human protein_coding chr18:72167184 chr18:72167184 . . 0 21 hm5C_associated_SNPs_490 0 0 1 0 3 CNDP2 chr18:72167172 3'AG 72167172 Downstream 13bp
chr18 72167184 72167184 1 + C A rs191869036 72167184 + 72167164 72167204 41 CTTCCAAGAACCTTCGAGATCTGCGGTCTGGGGTCTGGTTG CTTCCAAGAACCTTCGAGATATGCGGTCTGGGGTCTGGTTG Direct Loss 1 0.715941176641716 1 0.066752552986145 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CNDP2 ENSG00000133313 UTR5 Human protein_coding chr18:72167184 chr18:72167184 . . 0 21 hm5C_associated_SNPs_490 0 0 1 0 3 CNDP2 chr18:72167268 5'GT 72167268 Upstream 85bp
chr19 806451 806451 1 + C T rs11549887 806451 + 806431 806471 41 GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGGC GGCGCCCTGGCCCCCCTGGCTATCCCCTCGGCGGCGGCGGC Direct Loss 1 0.190843684345403 1 0.0939111709594727 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806451 chr19:806451 synonymous SNV . 0 21 hm5C_associated_SNPs_493 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 44bp
chr19 808586 808586 1 + C G rs13169 808586 + 808566 808606 41 CACAAGCTGCACGGGAAGCCCATCCGCATCACGCTCTCGAA CACAAGCTGCACGGGAAGCCGATCCGCATCACGCTCTCGAA Direct Loss 1 0.2567665372914 1 0.284186631441116 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:808586 chr19:808586 synonymous SNV . 0 21 hm5C_associated_SNPs_494 0 0 1 0 1 PTBP1 chr19:808546 3'AG 808546 Downstream 41bp
chr19 971936 971936 1 + C A rs138086881 971936 + 971916 971956 41 TCTGCTCCCAACAAAGGAGGCGGCGGCGGCGGCGGCAGCAG TCTGCTCCCAACAAAGGAGGAGGCGGCGGCGGCGGCAGCAG Direct Loss 1 0.796589081151263 1 0.868592977523804 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARID3A ENSG00000116017 CDS Human protein_coding chr19:971936 chr19:971936 synonymous SNV . 0 21 hm5C_associated_SNPs_495 0 0 0 0 1 ARID3A chr19:971878 3'AG 971878 Downstream 59bp
chr19 1438865 1438865 1 + C T rs7251165 1438865 + 1438845 1438885 41 TTCACCTACCGCGGCGTGGACCTCGACCAGCTGCTGGACAT TTCACCTACCGCGGCGTGGATCTCGACCAGCTGCTGGACAT Direct Loss 1 0.227963776699503 1 0.12025848031044 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS15 ENSG00000115268 CDS Human protein_coding chr19:1438865 chr19:1438865 synonymous SNV . 0 21 hm5C_associated_SNPs_499 0 0 1 0 2 RPS15 chr19:1438806 3'AG 1438806 Downstream 60bp
chr19 1438865 1438865 1 + C T rs7251165 1438865 + 1438845 1438885 41 TTCACCTACCGCGGCGTGGACCTCGACCAGCTGCTGGACAT TTCACCTACCGCGGCGTGGATCTCGACCAGCTGCTGGACAT Direct Loss 1 0.227963776699503 1 0.12025848031044 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS15 ENSG00000115268 CDS Human protein_coding chr19:1438865 chr19:1438865 synonymous SNV . 0 21 hm5C_associated_SNPs_499 0 0 1 0 2 RPS15 chr19:1438891 5'GT 1438891 Upstream 27bp
chr19 4954456 4954456 1 + C T rs374424470 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGGGGGGCTTCGTGTCCCCCAGGACGGGCAAGG Direct Loss 1 0.298697534142053 1 0.485595256090164 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954456 . 0.000 0 21 hm5C_associated_SNPs_504 0 0 0 0 2 UHRF1 chr19:4954362 3'AG 4954362 Downstream 95bp
chr19 4954456 4954456 1 + C T rs374424470 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGGGGGGCTTCGTGTCCCCCAGGACGGGCAAGG Direct Loss 1 0.298697534142053 1 0.485595256090164 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954456 . 0.000 0 21 hm5C_associated_SNPs_504 0 0 0 0 2 UHRF1 chr19:4954500 5'GT 4954500 Upstream 45bp
chr19 5135388 5135388 1 + C T rs141692080 5135388 + 5135368 5135408 41 GAGGCACCCATAGCCTCCCTCGGAAAGGGCTGCCCGGCCAC GAGGCACCCATAGCCTCCCTTGGAAAGGGCTGCCCGGCCAC Direct Loss 1 0.677592608658294 1 0.94049209356308 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KDM4B ENSG00000127663 CDS Human protein_coding chr19:5135388 chr19:5135388 synonymous SNV . 0 21 hm5C_associated_SNPs_505 0 0 1 0 1 KDM4B chr19:5135350 3'AG 5135350 Downstream 39bp
chr19 5690310 5690310 1 + C G rs568723208 5690310 + 5690290 5690330 41 TCCGCGCGGCGCCAGCCCTTCCGCCACGGCCGTCTCTGGAG TCCGCGCGGCGCCAGCCCTTGCGCCACGGCCGTCTCTGGAG Direct Loss 1 0.291587060189476 1 0.490275859832764 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL36 ENSG00000130255 UTR5 Human protein_coding chr19:5690310 chr19:5690310 . . 0 21 hm5C_associated_SNPs_506 0 0 1 0 1 RPL36 chr19:5690338 5'GT 5690338 Upstream 29bp
chr19 5691641 5691641 1 + C G rs201621814 5691641 + 5691621 5691661 41 AAGAAAGACTGAGCCCCTCCCCTGCCCTCTCCCTGAAATAA AAGAAAGACTGAGCCCCTCCGCTGCCCTCTCCCTGAAATAA Direct Loss 1 0.097322161185057 1 0.232406228780746 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL36 ENSG00000130255 UTR3 Human protein_coding chr19:5691641 chr19:5691641 . . 0 21 hm5C_associated_SNPs_507 0 0 1 0 1 RPL36 chr19:5691543 3'AG 5691543 Downstream 99bp
chr19 7969347 7969347 1 + C G rs41284492 7969347 + 7969327 7969367 41 TCATCTCAGGGACTGTCTGGCGCCCCCCTCCCCCGGCCTGG TCATCTCAGGGACTGTCTGGGGCCCCCCTCCCCCGGCCTGG Direct Loss 1 0.128874686586175 1 0.539459824562073 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAP2K7 ENSG00000076984 intronic Human protein_coding chr19:7969347 chr19:7969347 . . 0 21 hm5C_associated_SNPs_508 0 0 1 0 2 MAP2K7 chr19:7969336 3'AG 7969336 Downstream 12bp
chr19 7969347 7969347 1 + C G rs41284492 7969347 + 7969327 7969367 41 TCATCTCAGGGACTGTCTGGCGCCCCCCTCCCCCGGCCTGG TCATCTCAGGGACTGTCTGGGGCCCCCCTCCCCCGGCCTGG Direct Loss 1 0.128874686586175 1 0.539459824562073 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAP2K7 ENSG00000076984 intronic Human protein_coding chr19:7969347 chr19:7969347 . . 0 21 hm5C_associated_SNPs_508 0 0 1 0 2 MAP2K7 chr19:7969433 5'GT 7969433 Upstream 87bp
chr19 8478291 8478291 1 + C T rs530839730 8478291 + 8478271 8478311 41 GCCTGTGCGGCCGCCCGGCCCGGCCGCGGATCAGGTAGGCA GCCTGTGCGGCCGCCCGGCCTGGCCGCGGATCAGGTAGGCA Direct Loss 1 0.628161794122302 1 0.0370146036148071 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MARCH2 ENSG00000099785 UTR5 Human protein_coding chr19:8478291 chr19:8478291 . . 0 21 hm5C_associated_SNPs_510 0 0 1 0 1 MARCH2 chr19:8478304 5'GT 8478304 Upstream 14bp
chr19 17322803 17322803 1 + C T rs184066363 17322803 + 17322783 17322823 41 AAGGCCGTCGTCCTTCGTAACGGTCAGAGTGAAGACCCCCC AAGGCCGTCGTCCTTCGTAATGGTCAGAGTGAAGACCCCCC Direct Loss 1 0.195747815760902 1 0.14790952205658 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17322803 chr19:17322803 nonsynonymous SNV 0.981 2 21 hm5C_associated_SNPs_520 0 0 0 0 1 MYO9B chr19:17322704 3'AG 17322704 Downstream 100bp
chr19 18046000 18046000 1 + C T rs548714784 18046000 + 18045980 18046020 41 CAAAGCACGGGGATTACAAACGTGAGTGATCGCACCCGGCC CAAAGCACGGGGATTACAAATGTGAGTGATCGCACCCGGCC Direct Loss 1 0.666747888161842 1 0.322801947593689 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC124 ENSG00000007080 UTR5 Human protein_coding chr19:18046000 chr19:18046000 . . 0 21 hm5C_associated_SNPs_522 0 0 1 0 1 CCDC124 chr19:18046000 5'GT 18046000 Upstream 1bp
chr19 18543841 18543841 1 + C T rs138143670 18543841 + 18543821 18543861 41 AACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTGG AACCCCATCGGGCAGGGCGCTGGCAGGGCTAATGTGAGTGG Direct Loss 1 0.680935107423486 1 0.400896549224854 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543841 chr19:18543841 synonymous SNV . 0 21 hm5C_associated_SNPs_525 0 0 1 0 2 SSBP4 chr19:18543783 3'AG 18543783 Downstream 59bp
chr19 18543841 18543841 1 + C T rs138143670 18543841 + 18543821 18543861 41 AACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTGG AACCCCATCGGGCAGGGCGCTGGCAGGGCTAATGTGAGTGG Direct Loss 1 0.680935107423486 1 0.400896549224854 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543841 chr19:18543841 synonymous SNV . 0 21 hm5C_associated_SNPs_525 0 0 1 0 2 SSBP4 chr19:18543853 5'GT 18543853 Upstream 13bp
chr19 39948371 39948371 1 + C T rs199661076 39948371 + 39948351 39948391 41 AGGATGGAGCAGAGGACATTCTAGAGAAAGGTGTGTGTGAG AGGATGGAGCAGAGGACATTTTAGAGAAAGGTGTGTGTGAG Direct Loss 1 0.869285692497708 1 0.611702442169189 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948371 chr19:39948371 synonymous SNV . 0 21 hm5C_associated_SNPs_534 0 0 1 0 2 SUPT5H chr19:39948315 3'AG 39948315 Downstream 57bp
chr19 39948371 39948371 1 + C T rs199661076 39948371 + 39948351 39948391 41 AGGATGGAGCAGAGGACATTCTAGAGAAAGGTGTGTGTGAG AGGATGGAGCAGAGGACATTTTAGAGAAAGGTGTGTGTGAG Direct Loss 1 0.869285692497708 1 0.611702442169189 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948371 chr19:39948371 synonymous SNV . 0 21 hm5C_associated_SNPs_534 0 0 1 0 2 SUPT5H chr19:39948380 5'GT 39948380 Upstream 10bp
chr19 46026006 46026006 1 + C T rs201980485 46026006 + 46025986 46026026 41 CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGA CCTCAGGGGGGCCCACAGCCTCCAAAGCTGAGAGTGGTCGA Direct Loss 1 0.604978321915237 1 0.700377702713013 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026006 chr19:46026006 nonsynonymous SNV 0.119 0 21 hm5C_associated_SNPs_536 0 0 1 0 3 VASP chr19:46025976 3'AG 46025976 Downstream 31bp
chr19 46026006 46026006 1 + C T rs201980485 46026006 + 46025986 46026026 41 CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGA CCTCAGGGGGGCCCACAGCCTCCAAAGCTGAGAGTGGTCGA Direct Loss 1 0.604978321915237 1 0.700377702713013 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026006 chr19:46026006 nonsynonymous SNV 0.119 0 21 hm5C_associated_SNPs_536 0 0 1 0 3 VASP chr19:46025979 3'AG 46025979 Downstream 28bp
chr19 46026006 46026006 1 + C T rs201980485 46026006 + 46025986 46026026 41 CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGA CCTCAGGGGGGCCCACAGCCTCCAAAGCTGAGAGTGGTCGA Direct Loss 1 0.604978321915237 1 0.700377702713013 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026006 chr19:46026006 nonsynonymous SNV 0.119 0 21 hm5C_associated_SNPs_536 0 0 1 0 3 VASP chr19:46026076 5'GT 46026076 Upstream 71bp
chr19 48259063 48259063 1 + C T rs115908259 48259063 + 48259043 48259083 41 GAGCTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGGTGC GAGCTCGGAGCTGACAGACTTGCTCAGGACCCTGAAGGTGC Direct Loss 1 0.253183076019416 1 0.0371810495853424 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259063 chr19:48259063 nonsynonymous SNV 0.351 2 21 hm5C_associated_SNPs_538 0 0 1 0 2 NOP53 chr19:48259013 3'AG 48259013 Downstream 51bp
chr19 48259063 48259063 1 + C T rs115908259 48259063 + 48259043 48259083 41 GAGCTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGGTGC GAGCTCGGAGCTGACAGACTTGCTCAGGACCCTGAAGGTGC Direct Loss 1 0.253183076019416 1 0.0371810495853424 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259063 chr19:48259063 nonsynonymous SNV 0.351 2 21 hm5C_associated_SNPs_538 0 0 1 0 2 NOP53 chr19:48259079 5'GT 48259079 Upstream 17bp
chr19 48685964 48685964 1 + C T rs142099351 48685964 + 48685944 48685984 41 TACTGCAAGGGCCGCGACCACGGCGTCCTGGACGCCCTGCA TACTGCAAGGGCCGCGACCATGGCGTCCTGGACGCCCTGCA Direct Loss 1 0.941560370427379 1 0.772238910198212 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control C19orf68 ENSG00000185453 CDS Human protein_coding chr19:48685964 chr19:48685964 synonymous SNV . 0 21 hm5C_associated_SNPs_539 0 0 0 0 1 C19orf68 chr19:48686024 5'GT 48686024 Upstream 61bp
chr19 48959021 48959021 1 + C T rs184790733 48959021 + 48959001 48959041 41 CAGCATTCCCCCTGGCACTGCGGGGGCCTGGCCAGCTCATG CAGCATTCCCCCTGGCACTGTGGGGGCCTGGCCAGCTCATG Direct Loss 1 0.841730600925249 1 0.922312676906586 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KCNJ14 ENSG00000182324;ENSG00000105447 UTR5;UTR3 Human other chr19:48959021 chr19:48959021 . . 0 21 hm5C_associated_SNPs_540 0 0 1 0 1 KCNJ14 chr19:48959115 5'GT 48959115 Upstream 95bp
chr19 50029298 50029298 1 + C T rs34072018 50029298 + 50029278 50029318 41 TCCCTTCGTGGAGACGACACCGGGGTCCTCCTGCCCACCCC TCCCTTCGTGGAGACGACACTGGGGTCCTCCTGCCCACCCC Direct Loss 1 0.91924005619528 1 0.870201349258423 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FCGRT ENSG00000104870 CDS Human protein_coding chr19:50029298 chr19:50029298 synonymous SNV . 0 21 hm5C_associated_SNPs_543 0 0 1 0 1 FCGRT chr19:50029267 3'AG 50029267 Downstream 32bp
chr19 50810310 50810310 1 + C T rs200485394 50810310 + 50810290 50810330 41 TCATCCCTCTCTTCAGAGAGCGCATCCTCTCTGGAAAGCTG TCATCCCTCTCTTCAGAGAGTGCATCCTCTCTGGAAAGCTG Direct Loss 1 0.0740503151392791 1 0.117358654737473 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50810310 chr19:50810310 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_544 0 0 0 0 1 MYH14 chr19:50810306 3'AG 50810306 Downstream 5bp
chr19 50902141 50902141 1 + C A rs3218768 50902141 + 50902121 50902161 41 CGGCGGCCAGGCCCAGGGCCCGGGGTGCCCCCAAAGCGGGC CGGCGGCCAGGCCCAGGGCCAGGGGTGCCCCCAAAGCGGGC Direct Loss 1 0.760198425310956 1 0.68913745880127 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50902141 chr19:50902141 synonymous SNV . 0 21 hm5C_associated_SNPs_545 0 0 1 0 1 POLD1 chr19:50902105 3'AG 50902105 Downstream 37bp
chr19 55897302 55897302 1 + C G rs116572311 55897302 + 55897282 55897322 41 GCCTCGCCCCTCGCCTTCCTCTTTCCGTCTCAGGTCGCCGC GCCTCGCCCCTCGCCTTCCTGTTTCCGTCTCAGGTCGCCGC Direct Loss 1 0.0686782196150322 1 0.0438585579395294 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL28 ENSG00000108107 UTR5 Human protein_coding chr19:55897302 chr19:55897302 . . 0 21 hm5C_associated_SNPs_548 0 0 1 0 1 RPL28 chr19:55897333 5'GT 55897333 Upstream 32bp
chr20 2635157 2635157 1 + C T rs144743768 2635157 + 2635137 2635177 41 GGGGATCCCAAGATTGGTGCCGCAATACAGGAGGAGTTAGG GGGGATCCCAAGATTGGTGCTGCAATACAGGAGGAGTTAGG Direct Loss 1 0.574421798164884 1 0.298829823732376 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635157 chr20:2635157 synonymous SNV . 0 21 hm5C_associated_SNPs_551 0 0 1 0 2 NOP56 chr20:2635060 3'AG 2635060 Downstream 98bp
chr20 2635157 2635157 1 + C T rs144743768 2635157 + 2635137 2635177 41 GGGGATCCCAAGATTGGTGCCGCAATACAGGAGGAGTTAGG GGGGATCCCAAGATTGGTGCTGCAATACAGGAGGAGTTAGG Direct Loss 1 0.574421798164884 1 0.298829823732376 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635157 chr20:2635157 synonymous SNV . 0 21 hm5C_associated_SNPs_551 0 0 1 0 2 NOP56 chr20:2635221 5'GT 2635221 Upstream 65bp
chr20 33764041 33764041 1 + C T rs186899359 33764041 + 33764021 33764061 41 TCTAGAGCCCATGTCTTCTTCGAAGTGGCTGTGAATGGGAG TCTAGAGCCCATGTCTTCTTTGAAGTGGCTGTGAATGGGAG Direct Loss 1 0.694977484655222 1 0.7725590467453 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PROCR ENSG00000101000 CDS Human protein_coding chr20:33764041 chr20:33764041 synonymous SNV . 0 21 hm5C_associated_SNPs_554 0 0 1 0 1 PROCR chr20:33763971 3'AG 33763971 Downstream 71bp
chr22 18893995 18893995 1 + C G rs409155 18893995 + 18893975 18894015 41 AGCCTGGTGAAGGAGTTGCCCAGGTACGCGGGCGGGGCGGG AGCCTGGTGAAGGAGTTGCCGAGGTACGCGGGCGGGGCGGG Direct Loss 1 0.691659164208535 1 0.812848925590515 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DGCR6 ENSG00000183628 CDS Human protein_coding chr22:18893995 chr22:18893995 synonymous SNV . 0 21 hm5C_associated_SNPs_573 0 0 0 0 1 DGCR6 chr22:18893997 5'GT 18893997 Upstream 3bp
chr22 21213632 21213632 1 + C G rs144160898 21213632 + 21213612 21213652 41 AAGGTTGGGGTCGCCTCTTCCGAGGTGAGCCTGGGGCAGGG AAGGTTGGGGTCGCCTCTTCGGAGGTGAGCCTGGGGCAGGG Direct Loss 1 0.942782888822422 1 0.949777185916901 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNAP29 ENSG00000099940 CDS Human protein_coding chr22:21213632 chr22:21213632 synonymous SNV . 0 21 hm5C_associated_SNPs_575 1 0 1 0 1 SNAP29 chr22:21213635 5'GT 21213635 Upstream 4bp
chr22 26880006 26880006 1 + C T rs371251054 26880006 + 26879986 26880026 41 AGAGAGGCGGCGCCCCGGGGCCCCGAGGCGGAGTTCGAGTC AGAGAGGCGGCGCCCCGGGGTCCCGAGGCGGAGTTCGAGTC Direct Loss 1 0.570042471837925 1 0.412420451641083 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRRD ENSG00000100104 CDS Human protein_coding chr22:26880006 chr22:26880006 synonymous SNV . 0 21 hm5C_associated_SNPs_580 0 0 1 0 2 SRRD chr22:26879971 3'AG 26879971 Downstream 36bp
chr22 26880006 26880006 1 + C T rs371251054 26880006 + 26879986 26880026 41 AGAGAGGCGGCGCCCCGGGGCCCCGAGGCGGAGTTCGAGTC AGAGAGGCGGCGCCCCGGGGTCCCGAGGCGGAGTTCGAGTC Direct Loss 1 0.570042471837925 1 0.412420451641083 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRRD ENSG00000100104 CDS Human protein_coding chr22:26880006 chr22:26880006 synonymous SNV . 0 21 hm5C_associated_SNPs_580 0 0 1 0 2 SRRD chr22:26880065 5'GT 26880065 Upstream 60bp
chr22 46499106 46499106 1 + C G rs78060012 46499106 + 46499086 46499126 41 TCTGGATCGGCGGTCCCCATCAGAGGCCTGGGCTGAGTCCT TCTGGATCGGCGGTCCCCATGAGAGGCCTGGGCTGAGTCCT Direct Loss 1 0.667040081358528 1 0.850436866283417 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MIRLET7BHG ENSG00000197182 CDS Human lincRNA chr22:46499106 chr22:46499106 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_586 0 0 0 0 2 MIRLET7BHG chr22:46499072 3'AG 46499072 Downstream 35bp
chr22 46499106 46499106 1 + C G rs78060012 46499106 + 46499086 46499126 41 TCTGGATCGGCGGTCCCCATCAGAGGCCTGGGCTGAGTCCT TCTGGATCGGCGGTCCCCATGAGAGGCCTGGGCTGAGTCCT Direct Loss 1 0.667040081358528 1 0.850436866283417 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MIRLET7BHG ENSG00000197182 CDS Human lincRNA chr22:46499106 chr22:46499106 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_586 0 0 0 0 2 MIRLET7BHG chr22:46499129 5'GT 46499129 Upstream 24bp
chrX 49368274 49368274 1 + C T rs782181968 49368274 + 49368254 49368294 41 TATTTTTTATTTTTAAGGGCCGAAGCCTGAAGCTGATAGCC TATTTTTTATTTTTAAGGGCTGAAGCCTGAAGCTGATAGCC Direct Loss 1 0.167507311732729 1 0.40662470459938 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GAGE1 ENSG00000205777 CDS Human protein_coding chrX:49368274 chrX:49368274 nonsynonymous SNV 0.008 1 21 hm5C_associated_SNPs_591 0 0 0 0 1 GAGE1 chrX:49368271 3'AG 49368271 Downstream 4bp
chr11 118495742 118495742 1 + C T ACC 118495742 + 118495722 118495762 41 GCATGATTCCAGCAGGGGGCCGAGCCCCTGGGCCCCCCTAC GCATGATTCCAGCAGGGGGCTGAGCCCCTGGGCCCCCCTAC Direct Loss 1 0.419991060763771 1 0.778846144676208 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495742 chr11:118495742 stopgain 0.995 0 21 hm5C_associated_SNPs_600 0 0 0 0 2 PHLDB1 chr11:118495650 3'AG 118495650 Downstream 93bp
chr11 118495742 118495742 1 + C T ACC 118495742 + 118495722 118495762 41 GCATGATTCCAGCAGGGGGCCGAGCCCCTGGGCCCCCCTAC GCATGATTCCAGCAGGGGGCTGAGCCCCTGGGCCCCCCTAC Direct Loss 1 0.419991060763771 1 0.778846144676208 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495742 chr11:118495742 stopgain 0.995 0 21 hm5C_associated_SNPs_600 0 0 0 0 2 PHLDB1 chr11:118495775 5'GT 118495775 Upstream 34bp
chr1 248039251 248039251 1 + C T ACC 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGAGTCTGCTCTTGACTGCCGACCTGCGCAGTGTGCA Direct Loss 1 0.711926242208187 1 0.201809883117676 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039251 synonymous SNV . 0 21 hm5C_associated_SNPs_601 0 0 0 0 2 TRIM58 chr1:248039202 3'AG 248039202 Downstream 50bp
chr1 248039251 248039251 1 + C T ACC 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGAGTCTGCTCTTGACTGCCGACCTGCGCAGTGTGCA Direct Loss 1 0.711926242208187 1 0.201809883117676 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039251 synonymous SNV . 0 21 hm5C_associated_SNPs_601 0 0 0 0 2 TRIM58 chr1:248039339 5'GT 248039339 Upstream 89bp
chr12 56663999 56663999 1 + C G BLCA 56663999 + 56663979 56664019 41 ATGTTTTTTGATGAGGTTGTCAAACAGAATGTTGCTGCCTT ATGTTTTTTGATGAGGTTGTGAAACAGAATGTTGCTGCCTT Direct Loss 1 0.366801351723325 1 0.742384910583496 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ10A ENSG00000135469 CDS Human protein_coding chr12:56663999 chr12:56663999 synonymous SNV . 0 21 hm5C_associated_SNPs_602 0 0 1 0 1 COQ10A chr12:56663934 3'AG 56663934 Downstream 66bp
chr11 68363567 68363567 1 + C T BLCA 68363567 + 68363547 68363587 41 GGTCTTGTTTTTCCTTAGCTCGGGGAGTACAGACAGTGAGG GGTCTTGTTTTTCCTTAGCTTGGGGAGTACAGACAGTGAGG Direct Loss 1 0.769758576395019 1 0.767065525054932 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68363567 chr11:68363567 nonsynonymous SNV 0.938 3 21 hm5C_associated_SNPs_603 0 0 1 0 1 PPP6R3 chr11:68363565 3'AG 68363565 Downstream 3bp
chr8 104452461 104452461 1 + C T BLCA 104452461 + 104452441 104452481 41 GATCTGATGAAATGAACATTCGCCTGTGGAAAGCTAATGCT GATCTGATGAAATGAACATTTGCCTGTGGAAAGCTAATGCT Direct Loss 1 0.755856413301478 1 0.243362277746201 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104452461 chr8:104452461 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_604 0 0 1 0 1 DCAF13 chr8:104452364 3'AG 104452364 Downstream 98bp
chr4 154245282 154245282 1 + C T BLCA 154245282 + 154245262 154245302 41 GAGATTATTATTACAGATTTCCATAATCATTCTGTCAAGGT GAGATTATTATTACAGATTTTCATAATCATTCTGTCAAGGT Direct Loss 1 0.091139445229947 1 0.0619006752967834 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154245282 chr4:154245282 synonymous SNV . 0 21 hm5C_associated_SNPs_606 0 0 1 0 2 TRIM2 chr4:154245230 3'AG 154245230 Downstream 53bp
chr4 154245282 154245282 1 + C T BLCA 154245282 + 154245262 154245302 41 GAGATTATTATTACAGATTTCCATAATCATTCTGTCAAGGT GAGATTATTATTACAGATTTTCATAATCATTCTGTCAAGGT Direct Loss 1 0.091139445229947 1 0.0619006752967834 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154245282 chr4:154245282 synonymous SNV . 0 21 hm5C_associated_SNPs_606 0 0 1 0 2 TRIM2 chr4:154245300 5'GT 154245300 Upstream 19bp
chr1 22307567 22307567 1 + C T BLCA 22307567 + 22307547 22307587 41 CAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGG CAGGTGGTGTTGGGCGAGTATGACCGTGCTGTGAAGGAGGG Direct Loss 1 0.4225678800999 1 0.491183042526245 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307567 chr1:22307567 synonymous SNV . 0 21 hm5C_associated_SNPs_607 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 37bp
chr1 22307567 22307567 1 + C T BLCA 22307567 + 22307547 22307587 41 CAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGG CAGGTGGTGTTGGGCGAGTATGACCGTGCTGTGAAGGAGGG Direct Loss 1 0.4225678800999 1 0.491183042526245 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307567 chr1:22307567 synonymous SNV . 0 21 hm5C_associated_SNPs_607 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 99bp
chr1 65895720 65895720 1 + C A BLCA 65895720 + 65895700 65895740 41 GATTTCCTGTTATTCTTGCTCGTGTGGCTGTGGTAAGTTTT GATTTCCTGTTATTCTTGCTAGTGTGGCTGTGGTAAGTTTT Direct Loss 1 0.206155362673132 1 0.110314518213272 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LEPROT ENSG00000213625 CDS Human protein_coding chr1:65895720 chr1:65895720 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_608 0 0 1 0 1 LEPROT chr1:65895731 5'GT 65895731 Upstream 12bp
chr5 179151700 179151700 1 + C T BLCA 179151700 + 179151680 179151720 41 ATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAG ATAAGAAAACTGATGCACCTTAACCGGATGTGAAGGAAGAG Direct Loss 1 0.260353616566081 1 0.163715273141861 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151700 chr5:179151700 stopgain 0.955 1 21 hm5C_associated_SNPs_609 0 0 1 0 2 CANX chr5:179151658 3'AG 179151658 Downstream 43bp
chr5 179151700 179151700 1 + C T BLCA 179151700 + 179151680 179151720 41 ATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAG ATAAGAAAACTGATGCACCTTAACCGGATGTGAAGGAAGAG Direct Loss 1 0.260353616566081 1 0.163715273141861 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151700 chr5:179151700 stopgain 0.955 1 21 hm5C_associated_SNPs_609 0 0 1 0 2 CANX chr5:179151784 5'GT 179151784 Upstream 85bp
chr14 21556227 21556227 1 + C T BLCA 21556227 + 21556207 21556247 41 AGCAGCACTCCCACCCTGGCCAGTCGAGGGATCTTAGGGCT AGCAGCACTCCCACCCTGGCTAGTCGAGGGATCTTAGGGCT Direct Loss 1 0.232181955564592 1 0.176854401826859 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21556227 chr14:21556227 synonymous SNV . 0 21 hm5C_associated_SNPs_610 0 0 1 0 1 ARHGEF40 chr14:21556257 5'GT 21556257 Upstream 31bp
chrX 57515266 57515266 1 + C G BLCA 57515266 + 57515246 57515286 41 AAAGGACTCCCTTTAGGCATCCAGGTTGTGGCTGGACCCTT AAAGGACTCCCTTTAGGCATGCAGGTTGTGGCTGGACCCTT Direct Loss 1 0.552771818593969 1 0.700089871883392 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57515266 chrX:57515266 nonsynonymous SNV 0.956 3 21 hm5C_associated_SNPs_611 0 0 0 0 1 FAAH2 chrX:57515190 3'AG 57515190 Downstream 77bp
chr10 118314751 118314751 1 + C T BLCA 118314751 + 118314731 118314771 41 TTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGATGT TTAGTCCGATTGGACCCCAGTGATGCCAAATTTGTGGATGT Direct Loss 1 0.309827148597611 1 0.0713340640068054 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314751 chr10:118314751 synonymous SNV . 0 21 hm5C_associated_SNPs_612 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 59bp
chr3 12616427 12616427 1 + C G BLCA 12616427 + 12616407 12616447 41 GAGGAGATTTGGGATTCTCTCCAATTGCAATCACACGTACT GAGGAGATTTGGGATTCTCTGCAATTGCAATCACACGTACT Direct Loss 1 0.270655435479757 1 0.0773715674877167 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MKRN2 ENSG00000075975 CDS Human protein_coding chr3:12616427 chr3:12616427 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_613 0 0 1 0 1 MKRN2 chr3:12616505 5'GT 12616505 Upstream 79bp
chr3 33877665 33877665 1 + C T BLCA 33877665 + 33877645 33877685 41 ATGACTTCATTTATCATGATCGAGTTCCAGACCTTAAAGAT ATGACTTCATTTATCATGATTGAGTTCCAGACCTTAAAGAT Direct Loss 1 0.443738502292443 1 0.202501654624939 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33877665 chr3:33877665 stopgain 0.998 1 21 hm5C_associated_SNPs_614 0 0 1 0 1 PDCD6IP chr3:33877758 5'GT 33877758 Upstream 94bp
chr22 42042976 42042976 1 + C T BLCA 42042976 + 42042956 42042996 41 TCCAGAAGGCTCTCAAGCCTCCTCCAATAAAGCTCTATCGG TCCAGAAGGCTCTCAAGCCTTCTCCAATAAAGCTCTATCGG Direct Loss 1 0.101442585814528 1 0.255320876836777 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42042976 chr22:42042976 nonsynonymous SNV 0.227 0 21 hm5C_associated_SNPs_615 0 0 1 0 1 XRCC6 chr22:42042900 3'AG 42042900 Downstream 77bp
chr11 67052451 67052451 1 + C T BLCA 67052451 + 67052431 67052471 41 TGGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGG TGGCGGGGCGAGGGCGAGGCTCCGGTAAGGAGCCCGTGCGG Direct Loss 1 0.696771817243929 1 0.878458499908447 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052451 chr11:67052451 synonymous SNV . 0 21 hm5C_associated_SNPs_616 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 4bp
chr19 56172438 56172438 1 + C T BLCA 56172438 + 56172418 56172458 41 CCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGGTCT CCAGCCACTGCTCTTCTCCCTACCATGACCCCTGACGGTCT Direct Loss 1 0.710768437742999 1 0.343556970357895 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172438 chr19:56172438 synonymous SNV . 0 21 hm5C_associated_SNPs_620 0 0 1 0 1 U2AF2 chr19:56172404 3'AG 56172404 Downstream 35bp
chr1 22336318 22336318 1 + C G BLCA 22336318 + 22336298 22336338 41 GGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGAC GGAAGCCCACGGTGTTCACTGGAGTCTCCGCCTTCATCGAC Direct Loss 1 0.751530642317594 1 0.345091700553894 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336318 chr1:22336318 nonsynonymous SNV 0.141 3 21 hm5C_associated_SNPs_621 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 33bp
chr7 100151721 100151721 1 + C T BLCA 100151721 + 100151701 100151741 41 TCCTTCTCCTCCAAGCCCGTCAGTCAGTCTCACGCTCGGAC TCCTTCTCCTCCAAGCCCGTTAGTCAGTCTCACGCTCGGAC Direct Loss 1 0.0446107754694731 1 0.0459512174129486 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGFG2 ENSG00000106351 CDS Human protein_coding chr7:100151721 chr7:100151721 synonymous SNV . 0 21 hm5C_associated_SNPs_622 0 0 1 0 1 AGFG2 chr7:100151716 3'AG 100151716 Downstream 6bp
chr11 404268 404268 1 + C T BLCA 404268 + 404248 404288 41 GAAGTCCTCCCGGGCAGCATCCAGCCTCCTGGCCAACCTGT GAAGTCCTCCCGGGCAGCATTCAGCCTCCTGGCCAACCTGT Direct Loss 1 0.143689497721822 1 0.469972729682922 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PKP3 ENSG00000184363 CDS Human protein_coding chr11:404268 chr11:404268 nonsynonymous SNV 0.981 2 21 hm5C_associated_SNPs_623 0 0 0 0 2 PKP3 chr11:404236 3'AG 404236 Downstream 33bp
chr11 404268 404268 1 + C T BLCA 404268 + 404248 404288 41 GAAGTCCTCCCGGGCAGCATCCAGCCTCCTGGCCAACCTGT GAAGTCCTCCCGGGCAGCATTCAGCCTCCTGGCCAACCTGT Direct Loss 1 0.143689497721822 1 0.469972729682922 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PKP3 ENSG00000184363 CDS Human protein_coding chr11:404268 chr11:404268 nonsynonymous SNV 0.981 2 21 hm5C_associated_SNPs_623 0 0 0 0 2 PKP3 chr11:404323 5'GT 404323 Upstream 56bp
chr11 111959637 111959637 1 + C T BLCA 111959637 + 111959617 111959657 41 TGGACTAGCGAGAGGGTTGTCAGTGTTTTGCTCCTGGGTCT TGGACTAGCGAGAGGGTTGTTAGTGTTTTGCTCCTGGGTCT Direct Loss 1 0.875350234392438 1 0.691958069801331 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SDHD ENSG00000204370;ENSG00000255292 CDS Human other chr11:111959637 chr11:111959637 synonymous SNV . 0 21 hm5C_associated_SNPs_625 0 0 0 0 1 SDHD chr11:111959591 3'AG 111959591 Downstream 47bp
chr10 17276805 17276805 1 + C T BLCA 17276805 + 17276785 17276825 41 CTCACCTGTGAAGTGGATGCCCTTAAAGGAACCGTGAGTAC CTCACCTGTGAAGTGGATGCTCTTAAAGGAACCGTGAGTAC Direct Loss 1 0.144240837195063 1 0.0690104067325592 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276805 chr10:17276805 synonymous SNV . 0 21 hm5C_associated_SNPs_628 0 0 1 0 1 VIM chr10:17276817 5'GT 17276817 Upstream 13bp
chr1 22307603 22307603 1 + C T BLCA 22307603 + 22307583 22307623 41 GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCT GAGGGCCCCGAGCAGGTGATTCCCATCAACTCTGGGGACCT Direct Loss 1 0.418034584487122 1 0.0666649043560028 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307603 chr1:22307603 synonymous SNV . 0 21 hm5C_associated_SNPs_629 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 73bp
chr1 22307603 22307603 1 + C T BLCA 22307603 + 22307583 22307623 41 GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCT GAGGGCCCCGAGCAGGTGATTCCCATCAACTCTGGGGACCT Direct Loss 1 0.418034584487122 1 0.0666649043560028 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307603 chr1:22307603 synonymous SNV . 0 21 hm5C_associated_SNPs_629 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 63bp
chrX 54838641 54838641 1 + C G BLCA 54838641 + 54838621 54838661 41 AGAATGACCACTTGTACATTCTTCTCAGCACCTTAGAGCCC AGAATGACCACTTGTACATTGTTCTCAGCACCTTAGAGCCC Direct Loss 1 0.130201936843897 1 0.049378901720047 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54838641 chrX:54838641 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_632 0 0 1 0 2 MAGED2 chrX:54838590 3'AG 54838590 Downstream 52bp
chrX 54838641 54838641 1 + C G BLCA 54838641 + 54838621 54838661 41 AGAATGACCACTTGTACATTCTTCTCAGCACCTTAGAGCCC AGAATGACCACTTGTACATTGTTCTCAGCACCTTAGAGCCC Direct Loss 1 0.130201936843897 1 0.049378901720047 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54838641 chrX:54838641 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_632 0 0 1 0 2 MAGED2 chrX:54838684 5'GT 54838684 Upstream 44bp
chr6 53785428 53785428 1 + C G BLCA 53785428 + 53785408 53785448 41 TCTTTGTCACTGCAGAGAATCTGCCTCGCTGTGGTGCACTG TCTTTGTCACTGCAGAGAATGTGCCTCGCTGTGGTGCACTG Direct Loss 1 0.485919237209733 1 0.274250209331512 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53785428 chr6:53785428 nonsynonymous SNV 0.975 1 21 hm5C_associated_SNPs_633 0 0 1 0 1 LRRC1 chr6:53785423 3'AG 53785423 Downstream 6bp
chr1 22333440 22333440 1 + C A BLCA 22333440 + 22333420 22333460 41 GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT GCCGTCCAGCTCGCCTCACTACCTCCCGCTGGTGACATCCT Direct Loss 1 0.105773093085446 1 0.0685484111309052 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333440 chr1:22333440 synonymous SNV . 0 21 hm5C_associated_SNPs_637 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 70bp
chr1 22333440 22333440 1 + C A BLCA 22333440 + 22333420 22333460 41 GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT GCCGTCCAGCTCGCCTCACTACCTCCCGCTGGTGACATCCT Direct Loss 1 0.105773093085446 1 0.0685484111309052 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333440 chr1:22333440 synonymous SNV . 0 21 hm5C_associated_SNPs_637 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 68bp
chr16 28847774 28847774 1 + C T BLCA 28847774 + 28847754 28847794 41 CCCACTGCCTCCCCAGCTCTCAGTGACCCCGACTGTCTCCT CCCACTGCCTCCCCAGCTCTTAGTGACCCCGACTGTCTCCT Direct Loss 1 0.61523376295885 1 0.189369976520538 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ATXN2L ENSG00000168488 CDS Human antisense chr16:28847774 chr16:28847774 synonymous SNV . 0 21 hm5C_associated_SNPs_638 0 0 1 0 1 ATXN2L chr16:28847811 5'GT 28847811 Upstream 38bp
chr17 40818472 40818472 1 + C G BLCA 40818472 + 40818452 40818492 41 GCCCACCGGGTCAGCGGGCTCATGATGGCCAACCACACCAG GCCCACCGGGTCAGCGGGCTGATGATGGCCAACCACACCAG Direct Loss 1 0.834617767925168 1 0.508996427059174 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40818472 chr17:40818472 synonymous SNV . 0 21 hm5C_associated_SNPs_639 0 0 0 0 1 TUBG2 chr17:40818502 5'GT 40818502 Upstream 31bp
chrX 123190075 123190075 1 + C T BLCA 123190075 + 123190055 123190095 41 CAGTAGCAGCTGGAGAATTTCTCTACAAAAAGTAAATCTAT CAGTAGCAGCTGGAGAATTTTTCTACAAAAAGTAAATCTAT Direct Loss 1 0.522144974906534 1 0.782246828079224 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123190075 chrX:123190075 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_640 0 0 1 0 2 STAG2 chrX:123189978 3'AG 123189978 Downstream 98bp
chrX 123190075 123190075 1 + C T BLCA 123190075 + 123190055 123190095 41 CAGTAGCAGCTGGAGAATTTCTCTACAAAAAGTAAATCTAT CAGTAGCAGCTGGAGAATTTTTCTACAAAAAGTAAATCTAT Direct Loss 1 0.522144974906534 1 0.782246828079224 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123190075 chrX:123190075 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_640 0 0 1 0 2 STAG2 chrX:123190085 5'GT 123190085 Upstream 11bp
chr1 984698 984698 1 + C T BLCA 984698 + 984678 984718 41 GGCACCGCCTGGAGCTGTCCCGGCACTGGCGCCGGGGCACC GGCACCGCCTGGAGCTGTCCTGGCACTGGCGCCGGGGCACC Direct Loss 1 0.760720503482379 1 0.503324925899506 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984698 chr1:984698 nonsynonymous SNV 0.140 4 21 hm5C_associated_SNPs_643 0 0 1 0 1 AGRN chr1:984616 3'AG 984616 Downstream 83bp
chr1 198231746 198231746 1 + C G BLCA 198231746 + 198231726 198231766 41 AAAGCACGTGCTGATTGCATCAAAGAAATAGATCTTCTTAA AAAGCACGTGCTGATTGCATGAAAGAAATAGATCTTCTTAA Direct Loss 1 0.328575438344312 1 0.548563838005066 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231746 chr1:198231746 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_644 0 0 0 0 2 NEK7 chr1:198231705 3'AG 198231705 Downstream 42bp
chr1 198231746 198231746 1 + C G BLCA 198231746 + 198231726 198231766 41 AAAGCACGTGCTGATTGCATCAAAGAAATAGATCTTCTTAA AAAGCACGTGCTGATTGCATGAAAGAAATAGATCTTCTTAA Direct Loss 1 0.328575438344312 1 0.548563838005066 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231746 chr1:198231746 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_644 0 0 0 0 2 NEK7 chr1:198231767 5'GT 198231767 Upstream 22bp
chr20 30898670 30898670 1 + C T BLCA 30898670 + 30898650 30898690 41 AATTCCAGGAAGAGATTGCTCGGCTCAAGGCCCAGCTGGAA AATTCCAGGAAGAGATTGCTTGGCTCAAGGCCCAGCTGGAA Direct Loss 1 0.63775395426162 1 0.421742856502533 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898670 chr20:30898670 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_645 0 0 1 0 1 KIF3B chr20:30898703 5'GT 30898703 Upstream 34bp
chr7 44804952 44804952 1 + C T BLCA 44804952 + 44804932 44804972 41 AGCTCTGACTATGAGGAGATCACCATCGACCCCACGTGCAG AGCTCTGACTATGAGGAGATTACCATCGACCCCACGTGCAG Direct Loss 1 0.660421469834708 1 0.0604217052459717 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44804952 chr7:44804952 synonymous SNV . 0 21 hm5C_associated_SNPs_646 0 0 1 0 1 ZMIZ2 chr7:44804934 3'AG 44804934 Downstream 19bp
chr9 91930099 91930099 1 + C T BLCA 91930099 + 91930079 91930119 41 TAACAGGCATGTTATGTTACCCAGAGAACTTTCCAAACAAG TAACAGGCATGTTATGTTACTCAGAGAACTTTCCAAACAAG Direct Loss 1 0.624333881490736 1 0.207047134637833 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CKS2 ENSG00000123975 CDS Human protein_coding chr9:91930099 chr9:91930099 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_647 0 0 1 0 1 CKS2 chr9:91930085 3'AG 91930085 Downstream 15bp
chr17 28788910 28788910 1 + C T BLCA 28788910 + 28788890 28788930 41 TTCAGGTTCACAAGGGAGTTCATGGATTTGTTAAAGATAAG TTCAGGTTCACAAGGGAGTTTATGGATTTGTTAAAGATAAG Direct Loss 1 0.13986062953038 1 0.227298885583878 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28788910 chr17:28788910 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_648 0 0 1 0 1 CPD chr17:28788895 3'AG 28788895 Downstream 16bp
chr7 130021505 130021505 1 + C T BLCA 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC GGGGCCTGCCCACCCTGGCTTCCCCATCGACGTCCGAGTGC Direct Loss 1 0.216792402667953 1 0.0426490604877472 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021505 nonsynonymous SNV 0.248 0 21 hm5C_associated_SNPs_649 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 35bp
chr7 130021505 130021505 1 + C T BLCA 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC GGGGCCTGCCCACCCTGGCTTCCCCATCGACGTCCGAGTGC Direct Loss 1 0.216792402667953 1 0.0426490604877472 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021505 nonsynonymous SNV 0.248 0 21 hm5C_associated_SNPs_649 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 17bp
chr10 101515429 101515429 1 + C G BLCA 101515429 + 101515409 101515449 41 ACTTTCTTGCTCAGAATATTCCCTAAAGGTAACAGATGTGA ACTTTCTTGCTCAGAATATTGCCTAAAGGTAACAGATGTGA Direct Loss 1 0.430445441462326 1 0.202685803174973 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CUTC ENSG00000119929 CDS Human protein_coding chr10:101515429 chr10:101515429 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_652 0 0 1 1 1 CUTC chr10:101515382 3'AG 101515382 Downstream 48bp
chr19 17450306 17450306 1 + C T BLCA 17450306 + 17450286 17450326 41 CCGTGACGTGCTGGAGACCCCAGTCGACCTGGCCGGATTTC CCGTGACGTGCTGGAGACCCTAGTCGACCTGGCCGGATTTC Direct Loss 1 0.33644975632349 1 0.86938601732254 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17450306 chr19:17450306 nonsynonymous SNV 0.911 0 21 hm5C_associated_SNPs_653 0 0 1 0 1 GTPBP3 chr19:17450243 3'AG 17450243 Downstream 64bp
chr5 132427046 132427046 1 + C T BLCA 132427046 + 132427026 132427066 41 AGGAGCCAATGGAAACAGATCAGAATGCAAAGGAGGAAGAG AGGAGCCAATGGAAACAGATTAGAATGCAAAGGAGGAAGAG Direct Loss 1 0.72768500114028 1 0.259987473487854 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132427046 chr5:132427046 stopgain 0.999 1 21 hm5C_associated_SNPs_654 0 0 1 0 1 HSPA4 chr5:132427066 5'GT 132427066 Upstream 21bp
chr19 42796593 42796593 1 + C T BLCA 42796593 + 42796573 42796613 41 TCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCTGCT TCGCTGGGGCCCAGCGGCCCTGCCTTCGTGCAGCCCCTGCT Direct Loss 1 0.351104396284562 1 0.313304841518402 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796593 chr19:42796593 synonymous SNV . 0 21 hm5C_associated_SNPs_655 0 0 0 0 1 CIC chr19:42796618 5'GT 42796618 Upstream 26bp
chr11 63996766 63996766 1 + C T BLCA 63996766 + 63996746 63996786 41 CAGCCCCTGCTGTTGGGCATCGCCCGAAATGAGACCAGTGC CAGCCCCTGCTGTTGGGCATTGCCCGAAATGAGACCAGTGC Direct Loss 1 0.507294961708744 1 0.221416562795639 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63996766 chr11:63996766 synonymous SNV . 0 21 hm5C_associated_SNPs_656 0 0 0 0 2 NUDT22 chr11:63996719 3'AG 63996719 Downstream 48bp
chr11 63996766 63996766 1 + C T BLCA 63996766 + 63996746 63996786 41 CAGCCCCTGCTGTTGGGCATCGCCCGAAATGAGACCAGTGC CAGCCCCTGCTGTTGGGCATTGCCCGAAATGAGACCAGTGC Direct Loss 1 0.507294961708744 1 0.221416562795639 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63996766 chr11:63996766 synonymous SNV . 0 21 hm5C_associated_SNPs_656 0 0 0 0 2 NUDT22 chr11:63996816 5'GT 63996816 Upstream 51bp
chr3 179371085 179371085 1 + C T BLCA 179371085 + 179371065 179371105 41 AAGATGGCTGCAGGAGACATCGGCGAGCTGCTAGTGCCCCA AAGATGGCTGCAGGAGACATTGGCGAGCTGCTAGTGCCCCA Direct Loss 1 0.900659777803513 1 0.862323820590973 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control USP13 ENSG00000058056 CDS Human protein_coding chr3:179371085 chr3:179371085 synonymous SNV . 0 21 hm5C_associated_SNPs_658 0 0 1 0 1 USP13 chr3:179371181 5'GT 179371181 Upstream 97bp
chr3 33906752 33906752 1 + C T BLCA 33906752 + 33906732 33906772 41 TAGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCACC TAGCCTACTAAGCCCCAGCCTCCAGCCAGGCCTCCACCACC Direct Loss 1 0.20613542127568 1 0.708511829376221 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906752 chr3:33906752 synonymous SNV . 0 21 hm5C_associated_SNPs_659 0 0 1 0 1 PDCD6IP chr3:33906735 3'AG 33906735 Downstream 18bp
chr2 173352763 173352763 1 + C T BLCA 173352763 + 173352743 173352783 41 TGAACTGCTTTTATCGGTCTCGGGGTAAGTGTTTGTGTTTA TGAACTGCTTTTATCGGTCTTGGGGTAAGTGTTTGTGTTTA Direct Loss 1 0.675580265497902 1 0.792828679084778 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173352763 chr2:173352763 nonsynonymous SNV 0.952 1 21 hm5C_associated_SNPs_661 0 0 1 0 3 ITGA6 chr2:173352689 3'AG 173352689 Downstream 75bp
chr2 173352763 173352763 1 + C T BLCA 173352763 + 173352743 173352783 41 TGAACTGCTTTTATCGGTCTCGGGGTAAGTGTTTGTGTTTA TGAACTGCTTTTATCGGTCTTGGGGTAAGTGTTTGTGTTTA Direct Loss 1 0.675580265497902 1 0.792828679084778 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173352763 chr2:173352763 nonsynonymous SNV 0.952 1 21 hm5C_associated_SNPs_661 0 0 1 0 3 ITGA6 chr2:173352766 5'GT 173352766 Upstream 4bp
chr2 173352763 173352763 1 + C T BLCA 173352763 + 173352743 173352783 41 TGAACTGCTTTTATCGGTCTCGGGGTAAGTGTTTGTGTTTA TGAACTGCTTTTATCGGTCTTGGGGTAAGTGTTTGTGTTTA Direct Loss 1 0.675580265497902 1 0.792828679084778 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173352763 chr2:173352763 nonsynonymous SNV 0.952 1 21 hm5C_associated_SNPs_661 0 0 1 0 3 ITGA6 chr2:173352854 5'GT 173352854 Upstream 92bp
chr8 145697780 145697780 1 + C G BLCA 145697780 + 145697760 145697800 41 GGGCCTCCCGAGCGCCTGGCCGTGAGGCAGGGCCCAGAAGG GGGCCTCCCGAGCGCCTGGCGGTGAGGCAGGGCCCAGAAGG Direct Loss 1 0.72062153851888 1 0.786895573139191 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145697780 chr8:145697780 synonymous SNV . 0 21 hm5C_associated_SNPs_662 0 0 1 0 2 KIFC2 chr8:145697744 3'AG 145697744 Downstream 37bp
chr8 145697780 145697780 1 + C G BLCA 145697780 + 145697760 145697800 41 GGGCCTCCCGAGCGCCTGGCCGTGAGGCAGGGCCCAGAAGG GGGCCTCCCGAGCGCCTGGCGGTGAGGCAGGGCCCAGAAGG Direct Loss 1 0.72062153851888 1 0.786895573139191 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145697780 chr8:145697780 synonymous SNV . 0 21 hm5C_associated_SNPs_662 0 0 1 0 2 KIFC2 chr8:145697867 5'GT 145697867 Upstream 88bp
chr1 153724860 153724860 1 + C T BLCA 153724860 + 153724840 153724880 41 AAGATATTATCCATAATCCTCAGGCCTTGAGTCCTCAGTTC AAGATATTATCCATAATCCTTAGGCCTTGAGTCCTCAGTTC Direct Loss 1 0.605933136244618 1 0.77608323097229 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout INTS3 ENSG00000143624 CDS Human protein_coding chr1:153724860 chr1:153724860 stopgain 1.000 1 21 hm5C_associated_SNPs_664 0 0 1 0 1 INTS3 chr1:153724884 5'GT 153724884 Upstream 25bp
chr1 39898725 39898725 1 + C G BLCA 39898725 + 39898705 39898745 41 GTTTACTTTTCAAAGGCTTTCTCCATTGACATTATTCGACA GTTTACTTTTCAAAGGCTTTGTCCATTGACATTATTCGACA Direct Loss 1 0.232302532985352 1 0.889979004859924 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39898725 chr1:39898725 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_665 0 0 1 0 1 MACF1 chr1:39898720 3'AG 39898720 Downstream 6bp
chr16 89628100 89628100 1 + C T BLCA 89628100 + 89628080 89628120 41 TGCAGCGGCTGAAGGAGTACCGCTCCAAACTCATCCTCTTC TGCAGCGGCTGAAGGAGTACTGCTCCAAACTCATCCTCTTC Direct Loss 1 0.229072575842291 1 0.431117415428162 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89628100 chr16:89628100 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_666 0 0 1 0 3 RPL13 chr16:89628004 3'AG 89628004 Downstream 97bp
chr16 89628100 89628100 1 + C T BLCA 89628100 + 89628080 89628120 41 TGCAGCGGCTGAAGGAGTACCGCTCCAAACTCATCCTCTTC TGCAGCGGCTGAAGGAGTACTGCTCCAAACTCATCCTCTTC Direct Loss 1 0.229072575842291 1 0.431117415428162 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89628100 chr16:89628100 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_666 0 0 1 0 3 RPL13 chr16:89628073 3'AG 89628073 Downstream 28bp
chr16 89628100 89628100 1 + C T BLCA 89628100 + 89628080 89628120 41 TGCAGCGGCTGAAGGAGTACCGCTCCAAACTCATCCTCTTC TGCAGCGGCTGAAGGAGTACTGCTCCAAACTCATCCTCTTC Direct Loss 1 0.229072575842291 1 0.431117415428162 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89628100 chr16:89628100 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_666 0 0 1 0 3 RPL13 chr16:89628159 5'GT 89628159 Upstream 60bp
chr11 69462886 69462886 1 + C T BLCA 69462886 + 69462866 69462906 41 TACCGCCTCACACGCTTCCTCTCCAGAGTGATCAAGTGTGA TACCGCCTCACACGCTTCCTTTCCAGAGTGATCAAGTGTGA Direct Loss 1 0.821132617990612 1 0.128477245569229 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control CCND1 ENSG00000110092 CDS Human protein_coding chr11:69462886 chr11:69462886 synonymous SNV . 0 21 hm5C_associated_SNPs_668 0 0 1 0 1 CCND1 chr11:69462910 5'GT 69462910 Upstream 25bp
chr19 39208572 39208572 1 + C T BLCA 39208572 + 39208552 39208592 41 CCTGCCCTGCCCCAGGACATCAACAATGGCTGGCAGCACTT CCTGCCCTGCCCCAGGACATTAACAATGGCTGGCAGCACTT Direct Loss 1 0.719385979665777 1 0.214807003736496 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39208572 chr19:39208572 synonymous SNV . 0 21 hm5C_associated_SNPs_669 0 0 1 0 1 ACTN4 chr19:39208567 3'AG 39208567 Downstream 6bp
chr6 37280749 37280749 1 + C T BLCA 37280749 + 37280729 37280769 41 TCTCAAGACATGCTGCGAAGCATTGAGGCTGACAGCTTTTG TCTCAAGACATGCTGCGAAGTATTGAGGCTGACAGCTTTTG Direct Loss 1 0.168967856968119 1 0.0964062213897705 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37280749 chr6:37280749 synonymous SNV . 0 21 hm5C_associated_SNPs_671 0 0 1 0 2 TBC1D22B chr6:37280694 3'AG 37280694 Downstream 56bp
chr6 37280749 37280749 1 + C T BLCA 37280749 + 37280729 37280769 41 TCTCAAGACATGCTGCGAAGCATTGAGGCTGACAGCTTTTG TCTCAAGACATGCTGCGAAGTATTGAGGCTGACAGCTTTTG Direct Loss 1 0.168967856968119 1 0.0964062213897705 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37280749 chr6:37280749 synonymous SNV . 0 21 hm5C_associated_SNPs_671 0 0 1 0 2 TBC1D22B chr6:37280800 5'GT 37280800 Upstream 52bp
chr17 4859385 4859385 1 + C A BLCA 4859385 + 4859365 4859405 41 GTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAA GTTGAGAAGAAGGCCTGCAAATGTCTGCTGCTGAAGGTCAA Direct Loss 1 0.472911250935279 1 0.117459416389465 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859385 chr17:4859385 nonsynonymous SNV 0.973 2 21 hm5C_associated_SNPs_672 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 24bp
chr17 4859385 4859385 1 + C A BLCA 4859385 + 4859365 4859405 41 GTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAA GTTGAGAAGAAGGCCTGCAAATGTCTGCTGCTGAAGGTCAA Direct Loss 1 0.472911250935279 1 0.117459416389465 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859385 chr17:4859385 nonsynonymous SNV 0.973 2 21 hm5C_associated_SNPs_672 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 54bp
chr6 33657075 33657075 1 + C T BLCA 33657075 + 33657055 33657095 41 CCTCATCTGCTTCTCCATCGCGGCCCTGTTCACCAAGCGCT CCTCATCTGCTTCTCCATCGTGGCCCTGTTCACCAAGCGCT Direct Loss 1 0.203808810989377 1 0.38226518034935 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33657075 chr6:33657075 nonsynonymous SNV 0.239 1 21 hm5C_associated_SNPs_674 0 0 1 0 1 ITPR3 chr6:33657015 3'AG 33657015 Downstream 61bp
chr10 118314780 118314780 1 + C T BLCA 118314780 + 118314760 118314800 41 ATTTGTGGATGTAATTCACACGGATGGTGCCCCCATAGTCC ATTTGTGGATGTAATTCACATGGATGGTGCCCCCATAGTCC Direct Loss 1 0.686503580955714 1 0.286345988512039 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314780 chr10:118314780 nonsynonymous SNV 0.919 5 21 hm5C_associated_SNPs_675 1 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 30bp
chr13 114541062 114541062 1 - G A BLCA 114541062 - 114541042 114541082 41 CAGCGGCTTCGAGCTCTCCTCTGATGGCAGGACCTGCCAAG CAGCGGCTTCGAGCTCTCCTTTGATGGCAGGACCTGCCAAG Direct Loss 1 0.512295595856483 1 0.326903223991394 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GAS6 ENSG00000183087 CDS Human protein_coding chr13:114541062 chr13:114541062 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_676 0 0 1 0 1 GAS6 chr13:114541042 5'GT 114541042 Upstream 21bp
chr5 172386963 172386963 1 + C T BLCA 172386963 + 172386943 172386983 41 TCACACGTGCGCAGGAAGATCATGTCATCCCCGCTCTCCAA TCACACGTGCGCAGGAAGATTATGTCATCCCCGCTCTCCAA Direct Loss 1 0.766181910300856 1 0.132155209779739 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL26L1 ENSG00000037241 CDS Human protein_coding chr5:172386963 chr5:172386963 synonymous SNV . 0 21 hm5C_associated_SNPs_677 0 0 0 0 2 RPL26L1 chr5:172386868 3'AG 172386868 Downstream 96bp
chr5 172386963 172386963 1 + C T BLCA 172386963 + 172386943 172386983 41 TCACACGTGCGCAGGAAGATCATGTCATCCCCGCTCTCCAA TCACACGTGCGCAGGAAGATTATGTCATCCCCGCTCTCCAA Direct Loss 1 0.766181910300856 1 0.132155209779739 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL26L1 ENSG00000037241 CDS Human protein_coding chr5:172386963 chr5:172386963 synonymous SNV . 0 21 hm5C_associated_SNPs_677 0 0 0 0 2 RPL26L1 chr5:172387044 5'GT 172387044 Upstream 82bp
chr4 5733343 5733343 1 + C T BLCA 5733343 + 5733323 5733363 41 AGGTTTCTCAGCCGCACCTTCCTCCGGGTGAACGCCTTCCC AGGTTTCTCAGCCGCACCTTTCTCCGGGTGAACGCCTTCCC Direct Loss 1 0.0466106377158643 1 0.217384278774261 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EVC ENSG00000072840 CDS Human protein_coding chr4:5733343 chr4:5733343 synonymous SNV . 0 21 hm5C_associated_SNPs_678 0 0 1 0 1 EVC chr4:5733384 5'GT 5733384 Upstream 42bp
chr17 48153054 48153054 1 + C G BLCA 48153054 + 48153034 48153074 41 GCTGTCTTCCACGGCTTCTTCTCCATGCCCGAGATGCGCTG GCTGTCTTCCACGGCTTCTTGTCCATGCCCGAGATGCGCTG Direct Loss 1 0.849569925666449 1 0.987262368202209 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48153054 chr17:48153054 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_679 0 0 0 0 2 ITGA3 chr17:48152963 3'AG 48152963 Downstream 92bp
chr17 48153054 48153054 1 + C G BLCA 48153054 + 48153034 48153074 41 GCTGTCTTCCACGGCTTCTTCTCCATGCCCGAGATGCGCTG GCTGTCTTCCACGGCTTCTTGTCCATGCCCGAGATGCGCTG Direct Loss 1 0.849569925666449 1 0.987262368202209 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48153054 chr17:48153054 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_679 0 0 0 0 2 ITGA3 chr17:48153099 5'GT 48153099 Upstream 46bp
chr5 43649344 43649344 1 + C G BLCA 43649344 + 43649324 43649364 41 TGGCTGGCATTGTGGGGTATCATACCGTCTGGGGAGTGACC TGGCTGGCATTGTGGGGTATGATACCGTCTGGGGAGTGACC Direct Loss 1 0.0889990939142398 1 0.0536502301692963 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43649344 chr5:43649344 nonsynonymous SNV 0.290 3 21 hm5C_associated_SNPs_680 0 0 1 0 2 NNT chr5:43649249 3'AG 43649249 Downstream 96bp
chr5 43649344 43649344 1 + C G BLCA 43649344 + 43649324 43649364 41 TGGCTGGCATTGTGGGGTATCATACCGTCTGGGGAGTGACC TGGCTGGCATTGTGGGGTATGATACCGTCTGGGGAGTGACC Direct Loss 1 0.0889990939142398 1 0.0536502301692963 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43649344 chr5:43649344 nonsynonymous SNV 0.290 3 21 hm5C_associated_SNPs_680 0 0 1 0 2 NNT chr5:43649410 5'GT 43649410 Upstream 67bp
chr16 28950000 28950000 1 + C A BLCA 28950000 + 28949980 28950020 41 ATCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGA ATCCCCCGCCCAAGCAGGGTACCAGTCCTATGAGGATATGA Direct Loss 1 0.0937757500734633 1 0.081857830286026 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950000 chr16:28950000 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_682 0 0 0 0 3 CD19 chr16:28949994 3'AG 28949994 Downstream 7bp
chr16 28950000 28950000 1 + C A BLCA 28950000 + 28949980 28950020 41 ATCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGA ATCCCCCGCCCAAGCAGGGTACCAGTCCTATGAGGATATGA Direct Loss 1 0.0937757500734633 1 0.081857830286026 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950000 chr16:28950000 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_682 0 0 0 0 3 CD19 chr16:28949997 3'AG 28949997 Downstream 4bp
chr16 28950000 28950000 1 + C A BLCA 28950000 + 28949980 28950020 41 ATCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGA ATCCCCCGCCCAAGCAGGGTACCAGTCCTATGAGGATATGA Direct Loss 1 0.0937757500734633 1 0.081857830286026 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950000 chr16:28950000 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_682 0 0 0 0 3 CD19 chr16:28950089 5'GT 28950089 Upstream 90bp
chr3 128973917 128973917 1 + C T BLCA 128973917 + 128973897 128973937 41 AGCTCTGCCCTCGTGTCTTCCTTGGTGTGTAGTTGCTGCTG AGCTCTGCCCTCGTGTCTTCTTTGGTGTGTAGTTGCTGCTG Direct Loss 1 0.690635981248975 1 0.614743411540985 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COPG1 ENSG00000181789 CDS Human protein_coding chr3:128973917 chr3:128973917 synonymous SNV . 0 21 hm5C_associated_SNPs_683 0 0 1 0 2 COPG1 chr3:128973828 3'AG 128973828 Downstream 90bp
chr3 128973917 128973917 1 + C T BLCA 128973917 + 128973897 128973937 41 AGCTCTGCCCTCGTGTCTTCCTTGGTGTGTAGTTGCTGCTG AGCTCTGCCCTCGTGTCTTCTTTGGTGTGTAGTTGCTGCTG Direct Loss 1 0.690635981248975 1 0.614743411540985 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COPG1 ENSG00000181789 CDS Human protein_coding chr3:128973917 chr3:128973917 synonymous SNV . 0 21 hm5C_associated_SNPs_683 0 0 1 0 2 COPG1 chr3:128973920 5'GT 128973920 Upstream 4bp
chr14 56119741 56119741 1 + C G BLCA 56119741 + 56119721 56119761 41 CTATTCTTTTTAAGGATCTTCAAGAAGAAAATGAATCTTTA CTATTCTTTTTAAGGATCTTGAAGAAGAAAATGAATCTTTA Direct Loss 1 0.475487501150948 1 0.754526495933533 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 CDS Human protein_coding chr14:56119741 chr14:56119741 nonsynonymous SNV 0.992 0 21 hm5C_associated_SNPs_684 0 0 1 0 2 KTN1 chr14:56119735 3'AG 56119735 Downstream 7bp
chr14 56119741 56119741 1 + C G BLCA 56119741 + 56119721 56119761 41 CTATTCTTTTTAAGGATCTTCAAGAAGAAAATGAATCTTTA CTATTCTTTTTAAGGATCTTGAAGAAGAAAATGAATCTTTA Direct Loss 1 0.475487501150948 1 0.754526495933533 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 CDS Human protein_coding chr14:56119741 chr14:56119741 nonsynonymous SNV 0.992 0 21 hm5C_associated_SNPs_684 0 0 1 0 2 KTN1 chr14:56119803 5'GT 56119803 Upstream 63bp
chr1 155029461 155029461 1 + C A BLCA 155029461 + 155029441 155029481 41 AGCATCCTGGGAGTCGCCTCCTCCATAGCCCATGAGTTGGG AGCATCCTGGGAGTCGCCTCATCCATAGCCCATGAGTTGGG Direct Loss 1 0.798829256202058 1 0.947164177894592 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155029461 chr1:155029461 synonymous SNV . 0 21 hm5C_associated_SNPs_685 0 0 1 0 1 ADAM15 chr1:155029429 3'AG 155029429 Downstream 33bp
chr15 85189506 85189506 1 - G C BLCA 85189506 - 85189486 85189526 41 TGGCCTAGGGTGGCCGTCTTCTCCACATTGGCACCCGGAGT TGGCCTAGGGTGGCCGTCTTGTCCACATTGGCACCCGGAGT Direct Loss 1 0.866087269831789 1 0.894907832145691 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR73 ENSG00000177082 CDS Human protein_coding chr15:85189506 chr15:85189506 nonsynonymous SNV 0.088 0 21 hm5C_associated_SNPs_688 0 0 1 0 2 WDR73 chr15:85189415 5'GT 85189415 Upstream 92bp
chr15 85189506 85189506 1 - G C BLCA 85189506 - 85189486 85189526 41 TGGCCTAGGGTGGCCGTCTTCTCCACATTGGCACCCGGAGT TGGCCTAGGGTGGCCGTCTTGTCCACATTGGCACCCGGAGT Direct Loss 1 0.866087269831789 1 0.894907832145691 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR73 ENSG00000177082 CDS Human protein_coding chr15:85189506 chr15:85189506 nonsynonymous SNV 0.088 0 21 hm5C_associated_SNPs_688 0 0 1 0 2 WDR73 chr15:85189579 3'AG 85189579 Downstream 74bp
chr16 19184812 19184812 1 + C A BLCA 19184812 + 19184792 19184832 41 GGACCTGCCGGCACTGCTGTCAGAAGTGCTACGAGTCCAGC GGACCTGCCGGCACTGCTGTAAGAAGTGCTACGAGTCCAGC Direct Loss 1 0.794786221703432 1 0.844872355461121 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYT17 ENSG00000103528 CDS Human protein_coding chr16:19184812 chr16:19184812 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_689 0 0 0 0 2 SYT17 chr16:19184752 3'AG 19184752 Downstream 61bp
chr16 19184812 19184812 1 + C A BLCA 19184812 + 19184792 19184832 41 GGACCTGCCGGCACTGCTGTCAGAAGTGCTACGAGTCCAGC GGACCTGCCGGCACTGCTGTAAGAAGTGCTACGAGTCCAGC Direct Loss 1 0.794786221703432 1 0.844872355461121 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYT17 ENSG00000103528 CDS Human protein_coding chr16:19184812 chr16:19184812 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_689 0 0 0 0 2 SYT17 chr16:19184900 5'GT 19184900 Upstream 89bp
chr16 84684521 84684521 1 + C T BLCA 84684521 + 84684501 84684541 41 GTGTCTCGGCCATACAAGATCAGCGAATCATCAAAGGTCTG GTGTCTCGGCCATACAAGATTAGCGAATCATCAAAGGTCTG Direct Loss 1 0.499467186053751 1 0.108327180147171 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHL36 ENSG00000135686 CDS Human protein_coding chr16:84684521 chr16:84684521 synonymous SNV . 0 21 hm5C_associated_SNPs_690 0 0 0 0 2 KLHL36 chr16:84684458 3'AG 84684458 Downstream 64bp
chr16 84684521 84684521 1 + C T BLCA 84684521 + 84684501 84684541 41 GTGTCTCGGCCATACAAGATCAGCGAATCATCAAAGGTCTG GTGTCTCGGCCATACAAGATTAGCGAATCATCAAAGGTCTG Direct Loss 1 0.499467186053751 1 0.108327180147171 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHL36 ENSG00000135686 CDS Human protein_coding chr16:84684521 chr16:84684521 synonymous SNV . 0 21 hm5C_associated_SNPs_690 0 0 0 0 2 KLHL36 chr16:84684536 5'GT 84684536 Upstream 16bp
chrX 153608140 153608140 1 + C G BLCA 153608140 + 153608120 153608160 41 CAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGAGA CAGCTCGTCCGCCGCCTCCTGTTATAGCTTCTCTGGTGAGA Direct Loss 1 0.232590266794535 1 0.118998914957047 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608140 chrX:153608140 nonsynonymous SNV 0.023 2 21 hm5C_associated_SNPs_691 0 0 1 0 2 EMD chrX:153608050 3'AG 153608050 Downstream 91bp
chrX 153608140 153608140 1 + C G BLCA 153608140 + 153608120 153608160 41 CAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGAGA CAGCTCGTCCGCCGCCTCCTGTTATAGCTTCTCTGGTGAGA Direct Loss 1 0.232590266794535 1 0.118998914957047 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608140 chrX:153608140 nonsynonymous SNV 0.023 2 21 hm5C_associated_SNPs_691 0 0 1 0 2 EMD chrX:153608154 5'GT 153608154 Upstream 15bp
chr12 57604652 57604652 1 + C G BLCA 57604652 + 57604632 57604672 41 CCCGGCTTCCTGGGCGACCGCTGCCAGTACCGTGAGTGAGC CCCGGCTTCCTGGGCGACCGGTGCCAGTACCGTGAGTGAGC Direct Loss 1 0.17380620299938 1 0.408910274505615 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57604652 chr12:57604652 synonymous SNV . 0 21 hm5C_associated_SNPs_693 0 0 1 0 1 LRP1 chr12:57604662 5'GT 57604662 Upstream 11bp
chr13 48936995 48936995 1 + C T BLCA 48936995 + 48936975 48937015 41 GTTCACCTCGAACACCCAGGCGAGGTCAGAACAGGAGTGCA GTTCACCTCGAACACCCAGGTGAGGTCAGAACAGGAGTGCA Direct Loss 1 0.63140627618481 1 0.772399246692657 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RB1 ENSG00000139687 CDS Human protein_coding chr13:48936995 chr13:48936995 stopgain 0.957 1 21 hm5C_associated_SNPs_694 3 0 1 0 1 RB1 chr13:48936951 3'AG 48936951 Downstream 45bp
chr12 100995493 100995493 1 + C G BLCA 100995493 + 100995473 100995513 41 GTCAACTGATTGATGTTCTTCAAAACATGGTGAAAACATGC GTCAACTGATTGATGTTCTTGAAAACATGGTGAAAACATGC Direct Loss 1 0.421965537373863 1 0.189462840557098 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:100995493 chr12:100995493 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_695 0 0 1 0 2 GAS2L3 chr12:100995416 3'AG 100995416 Downstream 78bp
chr12 100995493 100995493 1 + C G BLCA 100995493 + 100995473 100995513 41 GTCAACTGATTGATGTTCTTCAAAACATGGTGAAAACATGC GTCAACTGATTGATGTTCTTGAAAACATGGTGAAAACATGC Direct Loss 1 0.421965537373863 1 0.189462840557098 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:100995493 chr12:100995493 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_695 0 0 1 0 2 GAS2L3 chr12:100995531 5'GT 100995531 Upstream 39bp
chr19 58352451 58352451 1 + C T BLCA 58352451 + 58352431 58352471 41 ATGACAGTGGAAACTTTCATCAGCACCAGAATGAGCACATT ATGACAGTGGAAACTTTCATTAGCACCAGAATGAGCACATT Direct Loss 1 0.706605789947603 1 0.287322640419006 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF587B ENSG00000269343 CDS Human protein_coding chr19:58352451 chr19:58352451 stopgain 0.042 0 21 hm5C_associated_SNPs_696 0 0 0 0 1 ZNF587B chr19:58352523 5'GT 58352523 Upstream 73bp
chr22 32217507 32217507 1 + C G BLCA 32217507 + 32217487 32217527 41 GGGCCATCCGGAGAAGCCATCCAGATCCACCACCAGACCCG GGGCCATCCGGAGAAGCCATGCAGATCCACCACCAGACCCG Direct Loss 1 0.562362678143443 1 0.231375455856323 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32217507 chr22:32217507 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_697 0 0 1 0 1 DEPDC5 chr22:32217488 3'AG 32217488 Downstream 20bp
chr12 113400499 113400499 1 + C G BLCA 113400499 + 113400479 113400519 41 AAGGACCAGCCCCTGCCTCTCTGCCCCCAGCCTATGCCCTG AAGGACCAGCCCCTGCCTCTGTGCCCCCAGCCTATGCCCTG Direct Loss 1 0.392051642643855 1 0.104432612657547 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OAS3 ENSG00000111331 CDS Human protein_coding chr12:113400499 chr12:113400499 nonsynonymous SNV 0.497 3 21 hm5C_associated_SNPs_698 0 0 0 0 1 OAS3 chr12:113400457 3'AG 113400457 Downstream 43bp
chr14 103390064 103390064 1 + C T BLCA 103390064 + 103390044 103390084 41 CCAGCACTGACCCAGGCGGTCTCCAAACTCTGGGTCCCCAA CCAGCACTGACCCAGGCGGTTTCCAAACTCTGGGTCCCCAA Direct Loss 1 0.685442275880864 1 0.223210126161575 experiment 1 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control AMN ENSG00000166126 CDS Human protein_coding chr14:103390064 chr14:103390064 synonymous SNV . 0 21 hm5C_associated_SNPs_699 0 0 1 0 1 AMN chr14:103390048 3'AG 103390048 Downstream 17bp
chr3 63965690 63965690 1 + C T BRCA 63965690 + 63965670 63965710 41 CAAAAGCAAAGGAGGCAGTGCAAGTGGAAGCAACCGTTCTT CAAAAGCAAAGGAGGCAGTGTAAGTGGAAGCAACCGTTCTT Direct Loss 1 0.377446723948399 1 0.695130407810211 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATXN7 ENSG00000163635 CDS Human protein_coding chr3:63965690 chr3:63965690 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_701 0 0 0 0 1 ATXN7 chr3:63965591 3'AG 63965591 Downstream 100bp
chr19 10200684 10200684 1 + C T BRCA 10200684 + 10200664 10200704 41 CAGTTTGCCTGCTCCTCCTGCGACCACGTCTGGTGGCGCCG CAGTTTGCCTGCTCCTCCTGTGACCACGTCTGGTGGCGCCG Direct Loss 1 0.237350271965962 1 0.546983599662781 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10200684 chr19:10200684 nonsynonymous SNV 0.995 0 21 hm5C_associated_SNPs_702 0 0 1 0 1 C19orf66 chr19:10200723 5'GT 10200723 Upstream 40bp
chr19 3151786 3151786 1 + C G BRCA 3151786 + 3151766 3151806 41 CTCCGCAGCCGCATGCCCACCACTGGCATCAACGAGTACTG CTCCGCAGCCGCATGCCCACGACTGGCATCAACGAGTACTG Direct Loss 1 0.407208480795483 1 0.0829663574695587 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNA15 ENSG00000060558 CDS Human protein_coding chr19:3151786 chr19:3151786 synonymous SNV . 0 21 hm5C_associated_SNPs_705 0 0 0 0 2 GNA15 chr19:3151705 3'AG 3151705 Downstream 82bp
chr19 3151786 3151786 1 + C G BRCA 3151786 + 3151766 3151806 41 CTCCGCAGCCGCATGCCCACCACTGGCATCAACGAGTACTG CTCCGCAGCCGCATGCCCACGACTGGCATCAACGAGTACTG Direct Loss 1 0.407208480795483 1 0.0829663574695587 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNA15 ENSG00000060558 CDS Human protein_coding chr19:3151786 chr19:3151786 synonymous SNV . 0 21 hm5C_associated_SNPs_705 0 0 0 0 2 GNA15 chr19:3151833 5'GT 3151833 Upstream 48bp
chr12 105543489 105543489 1 + C T BRCA 105543489 + 105543469 105543509 41 CCAGATTGATTAAAGATATTCGATTTTTCAGGGAAATTAAG CCAGATTGATTAAAGATATTTGATTTTTCAGGGAAATTAAG Direct Loss 1 0.146461647512102 1 0.0398896932601929 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105543489 chr12:105543489 stopgain 1.000 1 21 hm5C_associated_SNPs_706 0 0 1 0 2 WASHC4 chr12:105543393 3'AG 105543393 Downstream 97bp
chr12 105543489 105543489 1 + C T BRCA 105543489 + 105543469 105543509 41 CCAGATTGATTAAAGATATTCGATTTTTCAGGGAAATTAAG CCAGATTGATTAAAGATATTTGATTTTTCAGGGAAATTAAG Direct Loss 1 0.146461647512102 1 0.0398896932601929 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105543489 chr12:105543489 stopgain 1.000 1 21 hm5C_associated_SNPs_706 0 0 1 0 2 WASHC4 chr12:105543527 5'GT 105543527 Upstream 39bp
chr17 66033483 66033483 1 + C T BRCA 66033483 + 66033463 66033503 41 CTTTTCTCAAGGAAATGAGGCGTCGCAGAATAGAGGTCAAT CTTTTCTCAAGGAAATGAGGTGTCGCAGAATAGAGGTCAAT Direct Loss 1 0.147741595165036 1 0.101103216409683 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033483 chr17:66033483 nonsynonymous SNV 0.074 3 21 hm5C_associated_SNPs_707 0 0 1 0 1 KPNA2 chr17:66033474 3'AG 66033474 Downstream 10bp
chr14 21967278 21967278 1 - G C BRCA 21967278 - 21967258 21967298 41 TAGTTTTTATTTCCTAGGTTCGTTCCACCAGTCATAAACCA TAGTTTTTATTTCCTAGGTTGGTTCCACCAGTCATAAACCA Direct Loss 1 0.0221010256592465 1 0.148291110992432 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control METTL3 ENSG00000165819 CDS Human protein_coding chr14:21967278 chr14:21967278 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_709 0 0 1 0 1 METTL3 chr14:21967281 3'AG 21967281 Downstream 4bp
chr17 43183002 43183002 1 + C T BRCA 43183002 + 43182982 43183022 41 CCTAGGTTGGACTGGTGCTACAATAACCAGTCACCAGTGCG CCTAGGTTGGACTGGTGCTATAATAACCAGTCACCAGTGCG Direct Loss 1 0.376895275494316 1 0.135788947343826 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NMT1 ENSG00000136448 CDS Human protein_coding chr17:43183002 chr17:43183002 stopgain 0.993 1 21 hm5C_associated_SNPs_710 0 0 1 0 1 NMT1 chr17:43182987 3'AG 43182987 Downstream 16bp
chr11 48164480 48164480 1 + C G BRCA 48164480 + 48164460 48164500 41 TTTTGTTTTAGATCCCCCTCCTCCAGATGGATCCCCTAATA TTTTGTTTTAGATCCCCCTCGTCCAGATGGATCCCCTAATA Direct Loss 1 0.458235979873458 1 0.783857762813568 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48164480 chr11:48164480 nonsynonymous SNV 0.945 0 21 hm5C_associated_SNPs_712 0 0 0 0 1 PTPRJ chr11:48164471 3'AG 48164471 Downstream 10bp
chr15 44085898 44085898 1 + C G BRCA 44085898 + 44085878 44085918 41 CTCCCAGTGCCCCATCATCTCTACCCCCAGGGACTCGGAGA CTCCCAGTGCCCCATCATCTGTACCCCCAGGGACTCGGAGA Direct Loss 1 0.293114317021753 1 0.0411170721054077 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SERF2 ENSG00000140264 CDS Human protein_coding chr15:44085898 chr15:44085898 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_714 0 0 1 0 1 SERF2 chr15:44085885 3'AG 44085885 Downstream 14bp
chrX 9661244 9661244 1 + C T BRCA 9661244 + 9661224 9661264 41 CGGTTTTGCAAGAATATGGACGGAAGATGGTGAGTTCTGTG CGGTTTTGCAAGAATATGGATGGAAGATGGTGAGTTCTGTG Direct Loss 1 0.479399592997925 1 0.181618988513947 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBL1X ENSG00000101849 CDS Human protein_coding chrX:9661244 chrX:9661244 nonsynonymous SNV 0.976 1 21 hm5C_associated_SNPs_718 0 0 0 0 2 TBL1X chrX:9661189 3'AG 9661189 Downstream 56bp
chrX 9661244 9661244 1 + C T BRCA 9661244 + 9661224 9661264 41 CGGTTTTGCAAGAATATGGACGGAAGATGGTGAGTTCTGTG CGGTTTTGCAAGAATATGGATGGAAGATGGTGAGTTCTGTG Direct Loss 1 0.479399592997925 1 0.181618988513947 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBL1X ENSG00000101849 CDS Human protein_coding chrX:9661244 chrX:9661244 nonsynonymous SNV 0.976 1 21 hm5C_associated_SNPs_718 0 0 0 0 2 TBL1X chrX:9661252 5'GT 9661252 Upstream 9bp
chr5 72187661 72187661 1 + C T BRCA 72187661 + 72187641 72187681 41 ATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAAC ATATTCAGATGCTAATGCCTTCACTGATCCAGAAATGGAAC Direct Loss 1 0.0843566937803131 1 0.0383711159229279 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187661 chr5:72187661 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_719 0 0 1 0 2 TNPO1 chr5:72187637 3'AG 72187637 Downstream 25bp
chr5 72187661 72187661 1 + C T BRCA 72187661 + 72187641 72187681 41 ATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAAC ATATTCAGATGCTAATGCCTTCACTGATCCAGAAATGGAAC Direct Loss 1 0.0843566937803131 1 0.0383711159229279 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187661 chr5:72187661 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_719 0 0 1 0 2 TNPO1 chr5:72187723 5'GT 72187723 Upstream 63bp
chr15 91456118 91456118 1 + C A CESC 91456118 + 91456098 91456138 41 TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCCCGTGCTGCG TTTCTCTAGCCCTACGTCCCAAAGGAGCCCCCCGTGCTGCG Direct Loss 1 0.651997244059571 1 0.870900750160217 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91456118 chr15:91456118 synonymous SNV . 0 21 hm5C_associated_SNPs_721 0 0 1 0 1 MAN2A2 chr15:91456107 3'AG 91456107 Downstream 12bp
chr7 100470816 100470816 1 + C T CESC 100470816 + 100470796 100470836 41 GTGTGGGCTGCTGCTCTCCTCTGAGGGCGAGTGTCAGGGCT GTGTGGGCTGCTGCTCTCCTTTGAGGGCGAGTGTCAGGGCT Direct Loss 1 0.799593569002675 1 0.714592099189758 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100470816 chr7:100470816 nonsynonymous SNV 0.996 5 21 hm5C_associated_SNPs_732 0 0 1 0 1 TRIP6 chr7:100470794 3'AG 100470794 Downstream 23bp
chr6 36564728 36564728 1 + C T CESC 36564728 + 36564708 36564748 41 CGAGATGCAGCTGATGCAGTCCGAGAGCTAGATGGAAGGTG CGAGATGCAGCTGATGCAGTTCGAGAGCTAGATGGAAGGTG Direct Loss 1 0.374158613730308 1 0.629717111587524 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36564728 chr6:36564728 synonymous SNV . 0 21 hm5C_associated_SNPs_733 0 0 1 0 1 SRSF3 chr6:36564745 5'GT 36564745 Upstream 18bp
chr1 10165581 10165581 1 + C T CESC 10165581 + 10165561 10165601 41 GCCTTTCCAACAGTATTCTCCGATTTTAAGGACTTGATTGG GCCTTTCCAACAGTATTCTCTGATTTTAAGGACTTGATTGG Direct Loss 1 0.0807289513764568 1 0.0898511409759521 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBE4B ENSG00000130939 CDS Human protein_coding chr1:10165581 chr1:10165581 synonymous SNV . 0 21 hm5C_associated_SNPs_734 0 0 1 0 1 UBE4B chr1:10165574 3'AG 10165574 Downstream 8bp
chr10 118314792 118314792 1 + C T CESC 118314792 + 118314772 118314812 41 AATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGGGTG AATTCACACGGATGGTGCCCTCATAGTCCCCAATTTGGGTG Direct Loss 1 0.372752410461211 1 0.148768991231918 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314792 chr10:118314792 nonsynonymous SNV 0.015 5 21 hm5C_associated_SNPs_735 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 18bp
chr6 7572161 7572161 1 + C G CESC 7572161 + 7572141 7572181 41 CCAACAGAGAAAATGACAAGCAAGAAACATGGATGCTGATG CCAACAGAGAAAATGACAAGGAAGAAACATGGATGCTGATG Direct Loss 1 0.503009627837474 1 0.8472900390625 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572161 chr6:7572161 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_736 0 0 1 0 1 DSP chr6:7572075 3'AG 7572075 Downstream 87bp
chr11 67052376 67052376 1 + C T CESC 67052376 + 67052356 67052396 41 ATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCG ATGTCCAAGATGGGCAACCCTTTCCTGACCCAGTGGCAGCG Direct Loss 1 0.179851264940836 1 0.0828452408313751 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052376 chr11:67052376 synonymous SNV . 0 21 hm5C_associated_SNPs_737 0 0 1 0 2 GRK2 chr11:67052318 3'AG 67052318 Downstream 59bp
chr11 67052376 67052376 1 + C T CESC 67052376 + 67052356 67052396 41 ATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCG ATGTCCAAGATGGGCAACCCTTTCCTGACCCAGTGGCAGCG Direct Loss 1 0.179851264940836 1 0.0828452408313751 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052376 chr11:67052376 synonymous SNV . 0 21 hm5C_associated_SNPs_737 0 0 1 0 2 GRK2 chr11:67052454 5'GT 67052454 Upstream 79bp
chr3 184042681 184042681 1 + C T CESC 184042681 + 184042661 184042701 41 GGCAGGCAGAGGAACGAGGACGCCTGAAGGAAGAGCTGGAA GGCAGGCAGAGGAACGAGGATGCCTGAAGGAAGAGCTGGAA Direct Loss 1 0.495088994840221 1 0.320417284965515 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042681 chr3:184042681 nonsynonymous SNV 0.978 4 21 hm5C_associated_SNPs_738 0 0 1 0 1 EIF4G1 chr3:184042666 3'AG 184042666 Downstream 16bp
chr1 146742597 146742597 1 + C T CESC 146742597 + 146742577 146742617 41 TTCTTTTTCTTGCCAGGGGCCATCGGGTTTTACTTTTCTCC TTCTTTTTCTTGCCAGGGGCTATCGGGTTTTACTTTTCTCC Direct Loss 1 0.13347082599438 1 0.279058992862701 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CHD1L ENSG00000131778 CDS Human protein_coding chr1:146742597 chr1:146742597 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_740 0 0 1 0 2 CHD1L chr1:146742593 3'AG 146742593 Downstream 5bp
chr1 146742597 146742597 1 + C T CESC 146742597 + 146742577 146742617 41 TTCTTTTTCTTGCCAGGGGCCATCGGGTTTTACTTTTCTCC TTCTTTTTCTTGCCAGGGGCTATCGGGTTTTACTTTTCTCC Direct Loss 1 0.13347082599438 1 0.279058992862701 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CHD1L ENSG00000131778 CDS Human protein_coding chr1:146742597 chr1:146742597 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_740 0 0 1 0 2 CHD1L chr1:146742666 5'GT 146742666 Upstream 70bp
chr12 21598304 21598304 1 + C T CESC 21598304 + 21598284 21598324 41 TCTAAAATATTGGAAGAATTCGATGTTGAAGAACAATCAAG TCTAAAATATTGGAAGAATTTGATGTTGAAGAACAATCAAG Direct Loss 1 0.616208158049293 1 0.229847818613052 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PYROXD1 ENSG00000121350 CDS Human protein_coding chr12:21598304 chr12:21598304 synonymous SNV . 0 21 hm5C_associated_SNPs_741 0 0 1 0 2 PYROXD1 chr12:21598281 3'AG 21598281 Downstream 24bp
chr12 21598304 21598304 1 + C T CESC 21598304 + 21598284 21598324 41 TCTAAAATATTGGAAGAATTCGATGTTGAAGAACAATCAAG TCTAAAATATTGGAAGAATTTGATGTTGAAGAACAATCAAG Direct Loss 1 0.616208158049293 1 0.229847818613052 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PYROXD1 ENSG00000121350 CDS Human protein_coding chr12:21598304 chr12:21598304 synonymous SNV . 0 21 hm5C_associated_SNPs_741 0 0 1 0 2 PYROXD1 chr12:21598400 5'GT 21598400 Upstream 97bp
chr3 31658471 31658471 1 + C T CESC 31658471 + 31658451 31658491 41 TCTTGCAGTATCTGAGAGACCGATTAACAAAACAAGAGTTC TCTTGCAGTATCTGAGAGACTGATTAACAAAACAAGAGTTC Direct Loss 1 0.306156657256975 1 0.203905254602432 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STT3B ENSG00000163527 CDS Human protein_coding chr3:31658471 chr3:31658471 stopgain 1.000 1 21 hm5C_associated_SNPs_742 0 0 1 0 2 STT3B chr3:31658421 3'AG 31658421 Downstream 51bp
chr3 31658471 31658471 1 + C T CESC 31658471 + 31658451 31658491 41 TCTTGCAGTATCTGAGAGACCGATTAACAAAACAAGAGTTC TCTTGCAGTATCTGAGAGACTGATTAACAAAACAAGAGTTC Direct Loss 1 0.306156657256975 1 0.203905254602432 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STT3B ENSG00000163527 CDS Human protein_coding chr3:31658471 chr3:31658471 stopgain 1.000 1 21 hm5C_associated_SNPs_742 0 0 1 0 2 STT3B chr3:31658567 5'GT 31658567 Upstream 97bp
chr19 7528733 7528733 1 + C T CESC 7528733 + 7528713 7528753 41 TCCAGAGCCTGATCTGCAGGCAGCTGGGCAGCGCCAACGGC TCCAGAGCCTGATCTGCAGGTAGCTGGGCAGCGCCAACGGC Direct Loss 1 0.356778510188121 1 0.240205764770508 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7528733 chr19:7528733 stopgain 0.681 0 21 hm5C_associated_SNPs_743 0 0 0 0 1 ARHGEF18 chr19:7528704 3'AG 7528704 Downstream 30bp
chr7 133682272 133682272 1 + C T CESC 133682272 + 133682252 133682292 41 TCCTGCTCAAGACAGCCACACGAACACGGATCTCCCCCCAG TCCTGCTCAAGACAGCCACATGAACACGGATCTCCCCCCAG Direct Loss 1 0.221946728185288 1 0.116682678461075 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133682272 chr7:133682272 nonsynonymous SNV 0.031 0 21 hm5C_associated_SNPs_744 0 0 1 0 1 EXOC4 chr7:133682245 3'AG 133682245 Downstream 28bp
chr1 36028876 36028876 1 + C T CESC 36028876 + 36028856 36028896 41 TCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAGTAT TCCTGATCAAGGAAGGGGCCTCCTCGCTTCTGTGCAAGTAT Direct Loss 1 0.0262044416105287 1 0.0427426695823669 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028876 chr1:36028876 nonsynonymous SNV 0.984 1 21 hm5C_associated_SNPs_745 0 0 1 0 1 NCDN chr1:36028803 3'AG 36028803 Downstream 74bp
chr18 60642776 60642776 1 + C T CESC 60642776 + 60642756 60642796 41 TCTCTGTCGAAATGGAAAGCCGCTGCCTCTGTCCAGATCTT TCTCTGTCGAAATGGAAAGCTGCTGCCTCTGTCCAGATCTT Direct Loss 1 0.118391107208815 1 0.115067094564438 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PHLPP1 ENSG00000081913 CDS Human protein_coding chr18:60642776 chr18:60642776 nonsynonymous SNV 0.377 2 21 hm5C_associated_SNPs_746 0 0 1 0 1 PHLPP1 chr18:60642858 5'GT 60642858 Upstream 83bp
chr16 67319380 67319380 1 + C T CESC 67319380 + 67319360 67319400 41 TCCACTGCCACTTCTTCCTGCGTGAGCTGGAGGCTTGCACC TCCACTGCCACTTCTTCCTGTGTGAGCTGGAGGCTTGCACC Direct Loss 1 0.415388201404005 1 0.303780287504196 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67319380 chr16:67319380 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_747 0 0 1 0 1 PLEKHG4 chr16:67319439 5'GT 67319439 Upstream 60bp
chr11 61584165 61584165 1 + C T CESC 61584165 + 61584145 61584185 41 GAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGCGCGGGGT GAGCGCTGGGCCACCTCGTCTCAGGTGAAGTAGCGCGGGGT Direct Loss 1 0.445885865230602 1 0.809370338916779 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584165 chr11:61584165 stopgain 0.984 0 21 hm5C_associated_SNPs_748 0 0 0 0 1 FADS1;FADS2 chr11:61584168 5'GT 61584168 Upstream 4bp
chr1 22329579 22329579 1 + C T CESC 22329579 + 22329559 22329599 41 TCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAGCAGCT TCCCCTACAGCTGGCCCTGGTAGGTAAGAGCAATAGCAGCT Direct Loss 1 0.635372032973266 1 0.710992872714996 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329579 chr1:22329579 stopgain 1.000 0 21 hm5C_associated_SNPs_749 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 84bp
chr1 22329579 22329579 1 + C T CESC 22329579 + 22329559 22329599 41 TCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAGCAGCT TCCCCTACAGCTGGCCCTGGTAGGTAAGAGCAATAGCAGCT Direct Loss 1 0.635372032973266 1 0.710992872714996 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329579 chr1:22329579 stopgain 1.000 0 21 hm5C_associated_SNPs_749 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 3bp
chr19 50027862 50027862 1 + C T CESC 50027862 + 50027842 50027882 41 ACCCTCCGGAGCTGCAACTTCGGTTCCTGCGGAATGGGCTG ACCCTCCGGAGCTGCAACTTTGGTTCCTGCGGAATGGGCTG Direct Loss 1 0.511415453405971 1 0.738894939422607 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCGRT ENSG00000104870 CDS Human protein_coding chr19:50027862 chr19:50027862 nonsynonymous SNV 0.034 3 21 hm5C_associated_SNPs_750 0 0 1 1 1 FCGRT chr19:50027764 3'AG 50027764 Downstream 99bp
chr3 130712932 130712932 1 + C G CESC 130712932 + 130712912 130712952 41 TCCTAGTGGATGATGATTTTCAAACCATAATGTAAGCTTTG TCCTAGTGGATGATGATTTTGAAACCATAATGTAAGCTTTG Direct Loss 1 0.301697395429812 1 0.197726100683212 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130712932 chr3:130712932 nonsynonymous SNV 0.992 2 21 hm5C_associated_SNPs_751 0 0 1 0 1 ATP2C1 chr3:130712942 5'GT 130712942 Upstream 11bp
chr6 160485837 160485837 1 + C T CESC 160485837 + 160485817 160485857 41 TGCCTCTTAACTTTTTTAGCCAGTATTTCTAAAGGAGACTT TGCCTCTTAACTTTTTTAGCTAGTATTTCTAAAGGAGACTT Direct Loss 1 0.0718099463094246 1 0.129366159439087 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160485837 chr6:160485837 nonsynonymous SNV 0.331 3 21 hm5C_associated_SNPs_752 0 0 1 0 2 IGF2R chr6:160485836 3'AG 160485836 Downstream 2bp
chr6 160485837 160485837 1 + C T CESC 160485837 + 160485817 160485857 41 TGCCTCTTAACTTTTTTAGCCAGTATTTCTAAAGGAGACTT TGCCTCTTAACTTTTTTAGCTAGTATTTCTAAAGGAGACTT Direct Loss 1 0.0718099463094246 1 0.129366159439087 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160485837 chr6:160485837 nonsynonymous SNV 0.331 3 21 hm5C_associated_SNPs_752 0 0 1 0 2 IGF2R chr6:160485933 5'GT 160485933 Upstream 97bp
chr19 19466095 19466095 1 + C T CESC 19466095 + 19466075 19466115 41 CTGAATAAAGCCTGTGGGAACGCCATGGATGCCCATGAAGC CTGAATAAAGCCTGTGGGAATGCCATGGATGCCCATGAAGC Direct Loss 1 0.647448752087655 1 0.454515844583511 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MAU2 ENSG00000129933 CDS Human protein_coding chr19:19466095 chr19:19466095 synonymous SNV . 0 21 hm5C_associated_SNPs_754 0 0 1 0 1 MAU2 chr19:19466073 3'AG 19466073 Downstream 23bp
chr3 129234393 129234393 1 + C T CESC 129234393 + 129234373 129234413 41 CTGCTCAACAACCTGGGCAACGTCTGCATCAACTGCCGCCA CTGCTCAACAACCTGGGCAATGTCTGCATCAACTGCCGCCA Direct Loss 1 0.286525313582634 1 0.0394024550914764 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control IFT122 ENSG00000163913 CDS Human protein_coding chr3:129234393 chr3:129234393 synonymous SNV . 0 21 hm5C_associated_SNPs_755 0 0 0 0 2 IFT122 chr3:129234331 3'AG 129234331 Downstream 63bp
chr3 129234393 129234393 1 + C T CESC 129234393 + 129234373 129234413 41 CTGCTCAACAACCTGGGCAACGTCTGCATCAACTGCCGCCA CTGCTCAACAACCTGGGCAATGTCTGCATCAACTGCCGCCA Direct Loss 1 0.286525313582634 1 0.0394024550914764 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control IFT122 ENSG00000163913 CDS Human protein_coding chr3:129234393 chr3:129234393 synonymous SNV . 0 21 hm5C_associated_SNPs_755 0 0 0 0 2 IFT122 chr3:129234442 5'GT 129234442 Upstream 50bp
chr17 4859382 4859382 1 + C T CESC 4859382 + 4859362 4859402 41 GCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGT GCCGTTGAGAAGAAGGCCTGTAACTGTCTGCTGCTGAAGGT Direct Loss 1 0.498934274410593 1 0.0914114117622375 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859382 chr17:4859382 synonymous SNV . 0 21 hm5C_associated_SNPs_756 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 21bp
chr17 4859382 4859382 1 + C T CESC 4859382 + 4859362 4859402 41 GCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGT GCCGTTGAGAAGAAGGCCTGTAACTGTCTGCTGCTGAAGGT Direct Loss 1 0.498934274410593 1 0.0914114117622375 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859382 chr17:4859382 synonymous SNV . 0 21 hm5C_associated_SNPs_756 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 57bp
chr6 47577036 47577036 1 + C G CESC 47577036 + 47577016 47577056 41 TAGAAGCACTGAAAAAGGATCACGGGTAAGTAGCCCTTCTT TAGAAGCACTGAAAAAGGATGACGGGTAAGTAGCCCTTCTT Direct Loss 1 0.705870477839211 1 0.75274384021759 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47577036 chr6:47577036 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_758 0 0 1 0 1 CD2AP chr6:47577040 5'GT 47577040 Upstream 5bp
chr7 127228576 127228576 1 + C G CESC 127228576 + 127228556 127228596 41 GGCCTCACCGTGTCCGCGCTCTTTTCGCGGATCTTCGGGAA GGCCTCACCGTGTCCGCGCTGTTTTCGCGGATCTTCGGGAA Direct Loss 1 0.351852498877956 1 0.0747526586055756 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARF5 ENSG00000004059 CDS Human protein_coding chr7:127228576 chr7:127228576 synonymous SNV . 0 21 hm5C_associated_SNPs_759 0 0 1 0 1 ARF5 chr7:127228619 5'GT 127228619 Upstream 44bp
chrX 41201855 41201855 1 + C G CESC 41201855 + 41201835 41201875 41 CAGTCGCTGGTGTGACAAATCAGATGAAGATGATTGGTCAA CAGTCGCTGGTGTGACAAATGAGATGAAGATGATTGGTCAA Direct Loss 1 0.733411364820404 1 0.420986145734787 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201855 chrX:41201855 stopgain 1.000 0 21 hm5C_associated_SNPs_760 0 0 1 0 1 DDX3X chrX:41201906 5'GT 41201906 Upstream 52bp
chr9 139730261 139730261 1 + C T CESC 139730261 + 139730241 139730281 41 CGCCACGCTGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGG CGCCACGCTGGAGGAGCTGTTGGTGCAGCAGGAGACGGAGG Direct Loss 1 0.531704504243389 1 0.443979382514954 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139730261 chr9:139730261 nonsynonymous SNV 0.991 2 21 hm5C_associated_SNPs_761 0 0 1 1 2 RABL6 chr9:139730194 3'AG 139730194 Downstream 68bp
chr9 139730261 139730261 1 + C T CESC 139730261 + 139730241 139730281 41 CGCCACGCTGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGG CGCCACGCTGGAGGAGCTGTTGGTGCAGCAGGAGACGGAGG Direct Loss 1 0.531704504243389 1 0.443979382514954 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139730261 chr9:139730261 nonsynonymous SNV 0.991 2 21 hm5C_associated_SNPs_761 0 0 1 1 2 RABL6 chr9:139730297 5'GT 139730297 Upstream 37bp
chr2 220346365 220346365 1 + C A CESC 220346365 + 220346345 220346385 41 CTCATTCATTCACAGGAGACCTACCGCAGAAGAGACCCTAG CTCATTCATTCACAGGAGACATACCGCAGAAGAGACCCTAG Direct Loss 1 0.0309995163725552 1 0.0682821869850159 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220346365 chr2:220346365 nonsynonymous SNV 0.690 3 21 hm5C_associated_SNPs_763 0 0 0 0 2 SPEG chr2:220346360 3'AG 220346360 Downstream 6bp
chr2 220346365 220346365 1 + C A CESC 220346365 + 220346345 220346385 41 CTCATTCATTCACAGGAGACCTACCGCAGAAGAGACCCTAG CTCATTCATTCACAGGAGACATACCGCAGAAGAGACCCTAG Direct Loss 1 0.0309995163725552 1 0.0682821869850159 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220346365 chr2:220346365 nonsynonymous SNV 0.690 3 21 hm5C_associated_SNPs_763 0 0 0 0 2 SPEG chr2:220346402 5'GT 220346402 Upstream 38bp
chr2 219526252 219526252 1 + C G CESC 219526252 + 219526232 219526272 41 ACTGACCGAAAGGTTTTCTTCAACATCCTGGAGGAAGGTGT ACTGACCGAAAGGTTTTCTTGAACATCCTGGAGGAAGGTGT Direct Loss 1 0.781554442228647 1 0.371061027050018 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCS1L ENSG00000074582 CDS Human protein_coding chr2:219526252 chr2:219526252 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_765 0 0 1 0 1 BCS1L chr2:219526268 5'GT 219526268 Upstream 17bp
chr1 28862519 28862519 1 + C T CESC 28862519 + 28862499 28862539 41 CACGTGTACGGCTTCGGCCTCTCCAACTACCATCAGCTTGG CACGTGTACGGCTTCGGCCTTTCCAACTACCATCAGCTTGG Direct Loss 1 0.729624015255042 1 0.734801948070526 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28862519 chr1:28862519 synonymous SNV . 0 21 hm5C_associated_SNPs_766 0 0 1 0 1 RCC1 chr1:28862538 5'GT 28862538 Upstream 20bp
chr17 33328374 33328374 1 + C T CESC 33328374 + 33328354 33328394 41 TTCCCTCGCTGCACCCGAATCCGAGATGATAAGGACTGGAA TTCCCTCGCTGCACCCGAATTCGAGATGATAAGGACTGGAA Direct Loss 1 0.446139036012337 1 0.770045101642609 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33328374 chr17:33328374 synonymous SNV . 0 21 hm5C_associated_SNPs_768 0 0 1 0 2 LIG3 chr17:33328276 3'AG 33328276 Downstream 99bp
chr17 33328374 33328374 1 + C T CESC 33328374 + 33328354 33328394 41 TTCCCTCGCTGCACCCGAATCCGAGATGATAAGGACTGGAA TTCCCTCGCTGCACCCGAATTCGAGATGATAAGGACTGGAA Direct Loss 1 0.446139036012337 1 0.770045101642609 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33328374 chr17:33328374 synonymous SNV . 0 21 hm5C_associated_SNPs_768 0 0 1 0 2 LIG3 chr17:33328422 5'GT 33328422 Upstream 49bp
chr1 978683 978683 1 + C T CESC 978683 + 978663 978703 41 GCGACGTGTGCTGTGAAGAACGGGCAGGCAGCGTGTGAATG GCGACGTGTGCTGTGAAGAATGGGCAGGCAGCGTGTGAATG Direct Loss 1 0.379358023145464 1 0.311261773109436 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:978683 chr1:978683 synonymous SNV . 0 21 hm5C_associated_SNPs_769 0 0 1 0 1 AGRN chr1:978619 3'AG 978619 Downstream 65bp
chr22 50960208 50960208 1 + C G CESC 50960208 + 50960188 50960228 41 CCCCCTGTGTGGAGGAGGCTCTGGGACAGAAGCGCAAGAGG CCCCCTGTGTGGAGGAGGCTGTGGGACAGAAGCGCAAGAGG Direct Loss 1 0.829489139186729 1 0.640529215335846 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50960208 chr22:50960208 nonsynonymous SNV 0.972 0 21 hm5C_associated_SNPs_770 0 0 1 0 2 NCAPH2 chr22:50960170 3'AG 50960170 Downstream 39bp
chr22 50960208 50960208 1 + C G CESC 50960208 + 50960188 50960228 41 CCCCCTGTGTGGAGGAGGCTCTGGGACAGAAGCGCAAGAGG CCCCCTGTGTGGAGGAGGCTGTGGGACAGAAGCGCAAGAGG Direct Loss 1 0.829489139186729 1 0.640529215335846 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50960208 chr22:50960208 nonsynonymous SNV 0.972 0 21 hm5C_associated_SNPs_770 0 0 1 0 2 NCAPH2 chr22:50960277 5'GT 50960277 Upstream 70bp
chr19 3434306 3434306 1 + C T CESC 3434306 + 3434286 3434326 41 ACTGGAACAGGACCCAACTTCTCCCTGGGGGAGCTGCAGGG ACTGGAACAGGACCCAACTTTTCCCTGGGGGAGCTGCAGGG Direct Loss 1 0.402923493361621 1 0.796190679073334 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFIC ENSG00000141905 CDS Human protein_coding chr19:3434306 chr19:3434306 synonymous SNV . 0 21 hm5C_associated_SNPs_771 0 0 1 0 2 NFIC chr19:3434275 3'AG 3434275 Downstream 32bp
chr19 3434306 3434306 1 + C T CESC 3434306 + 3434286 3434326 41 ACTGGAACAGGACCCAACTTCTCCCTGGGGGAGCTGCAGGG ACTGGAACAGGACCCAACTTTTCCCTGGGGGAGCTGCAGGG Direct Loss 1 0.402923493361621 1 0.796190679073334 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFIC ENSG00000141905 CDS Human protein_coding chr19:3434306 chr19:3434306 synonymous SNV . 0 21 hm5C_associated_SNPs_771 0 0 1 0 2 NFIC chr19:3434398 5'GT 3434398 Upstream 93bp
chr1 22333386 22333386 1 + C T CESC 22333386 + 22333366 22333406 41 CCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCAGCGC CCCAGCAATGACATCGCCCTTATCAAGCTCTCACGCAGCGC Direct Loss 1 0.542638959720684 1 0.129946261644363 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333386 chr1:22333386 synonymous SNV . 0 21 hm5C_associated_SNPs_772 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 16bp
chr6 37284604 37284604 1 + C T CESC 37284604 + 37284584 37284624 41 TCCGCCTGTGGGACACATATCAGGTAGGAGGGATTCCCCGG TCCGCCTGTGGGACACATATTAGGTAGGAGGGATTCCCCGG Direct Loss 1 0.873314033889322 1 0.729830861091614 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37284604 chr6:37284604 stopgain 0.909 1 21 hm5C_associated_SNPs_774 0 0 1 2 1 TBC1D22B chr6:37284606 5'GT 37284606 Upstream 3bp
chr9 110068756 110068756 1 + C T CESC 110068756 + 110068736 110068776 41 CCACCACCACAACTGTGGCTCAGGCTCCAACCCCTGTCCCT CCACCACCACAACTGTGGCTTAGGCTCCAACCCCTGTCCCT Direct Loss 1 0.713778124309679 1 0.365045994520187 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD23B ENSG00000119318 CDS Human protein_coding chr9:110068756 chr9:110068756 stopgain 0.936 0 21 hm5C_associated_SNPs_775 0 0 1 0 1 RAD23B chr9:110068660 3'AG 110068660 Downstream 97bp
chr16 67283103 67283103 1 + C T CESC 67283103 + 67283083 67283123 41 GTGGCCAGTCTGGCCAAAATCGGTGAGTGCGTGTGTGCGTG GTGGCCAGTCTGGCCAAAATTGGTGAGTGCGTGTGTGCGTG Direct Loss 1 0.804352237225676 1 0.147351503372192 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC9A5 ENSG00000135740 CDS Human protein_coding chr16:67283103 chr16:67283103 synonymous SNV . 0 21 hm5C_associated_SNPs_776 0 0 0 0 1 SLC9A5 chr16:67283104 5'GT 67283104 Upstream 2bp
chr19 5144297 5144297 1 + C T CESC 5144297 + 5144277 5144317 41 GTGTCCCTAGGCCAGGTGGTCATCACCAAGAACCGCAACGG GTGTCCCTAGGCCAGGTGGTTATCACCAAGAACCGCAACGG Direct Loss 1 0.370568929632049 1 0.132304191589355 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM4B ENSG00000127663 CDS Human protein_coding chr19:5144297 chr19:5144297 synonymous SNV . 0 21 hm5C_associated_SNPs_777 0 0 1 0 1 KDM4B chr19:5144259 3'AG 5144259 Downstream 39bp
chr1 24022845 24022845 1 + C T CESC 24022845 + 24022825 24022865 41 CTCTTTCAGTATGATGGGATCATCCTTCCTGGCAAATAAAT CTCTTTCAGTATGATGGGATTATCCTTCCTGGCAAATAAAT Direct Loss 1 0.0777798557100349 1 0.0473870933055878 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022845 chr1:24022845 synonymous SNV . 0 21 hm5C_associated_SNPs_778 0 0 1 0 1 RPL11 chr1:24022834 3'AG 24022834 Downstream 12bp
chr10 17278316 17278316 1 + C T CESC 17278316 + 17278296 17278336 41 CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTCAAAA CTAATCTGGATTCACTCCCTTTGGTTGATACCCACTCAAAA Direct Loss 1 0.292157230865219 1 0.330766350030899 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278316 chr10:17278316 synonymous SNV . 0 21 hm5C_associated_SNPs_779 0 0 1 0 2 VIM chr10:17278293 3'AG 17278293 Downstream 24bp
chr10 17278316 17278316 1 + C T CESC 17278316 + 17278296 17278336 41 CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTCAAAA CTAATCTGGATTCACTCCCTTTGGTTGATACCCACTCAAAA Direct Loss 1 0.292157230865219 1 0.330766350030899 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278316 chr10:17278316 synonymous SNV . 0 21 hm5C_associated_SNPs_779 0 0 1 0 2 VIM chr10:17278378 5'GT 17278378 Upstream 63bp
chr10 91532517 91532517 1 + C G CESC 91532517 + 91532497 91532537 41 CAAGTAAAGAAAATGTGTCTCAACCAAAACGAGCCAAACGG CAAGTAAAGAAAATGTGTCTGAACCAAAACGAGCCAAACGG Direct Loss 1 0.285553906740029 1 0.302845358848572 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control KIF20B ENSG00000138182 CDS Human protein_coding chr10:91532517 chr10:91532517 nonsynonymous SNV 0.051 1 21 hm5C_associated_SNPs_780 0 0 1 0 2 KIF20B chr10:91532446 3'AG 91532446 Downstream 72bp
chr10 91532517 91532517 1 + C G CESC 91532517 + 91532497 91532537 41 CAAGTAAAGAAAATGTGTCTCAACCAAAACGAGCCAAACGG CAAGTAAAGAAAATGTGTCTGAACCAAAACGAGCCAAACGG Direct Loss 1 0.285553906740029 1 0.302845358848572 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control KIF20B ENSG00000138182 CDS Human protein_coding chr10:91532517 chr10:91532517 nonsynonymous SNV 0.051 1 21 hm5C_associated_SNPs_780 0 0 1 0 2 KIF20B chr10:91532588 5'GT 91532588 Upstream 72bp
chr3 138329875 138329875 1 + C G CESC 138329875 + 138329855 138329895 41 TATCTCCGGACTCTGCCACTCTGAGGTTAGTGCCCTGCCCA TATCTCCGGACTCTGCCACTGTGAGGTTAGTGCCCTGCCCA Direct Loss 1 0.765141296245757 1 0.810272395610809 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAIM ENSG00000158234 CDS Human protein_coding chr3:138329875 chr3:138329875 nonsynonymous SNV 0.005 1 21 hm5C_associated_SNPs_781 0 0 1 0 1 FAIM chr3:138329879 5'GT 138329879 Upstream 5bp
chr1 44878382 44878382 1 + C G CESC 44878382 + 44878362 44878402 41 CCTCATCTAGCCCAGAGGATCGGAATGACAGATGTAAGTAC CCTCATCTAGCCCAGAGGATGGGAATGACAGATGTAAGTAC Direct Loss 1 0.706824709080394 1 0.603848576545715 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878382 chr1:44878382 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_783 0 0 1 0 1 RNF220 chr1:44878394 5'GT 44878394 Upstream 13bp
chr2 29147999 29147999 1 + C T CESC 29147999 + 29147979 29148019 41 TTGTATATGGCAGTTGGTTTCAGCCTACTATTGAGCGAGTG TTGTATATGGCAGTTGGTTTTAGCCTACTATTGAGCGAGTG Direct Loss 1 0.706116694892317 1 0.355070650577545 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR43 ENSG00000163811 CDS Human protein_coding chr2:29147999 chr2:29147999 stopgain 0.999 1 21 hm5C_associated_SNPs_785 0 0 1 0 1 WDR43 chr2:29148019 5'GT 29148019 Upstream 21bp
chr12 49720471 49720471 1 + C G CESC 49720471 + 49720451 49720491 41 GACTTCAGTGAGCCAGGCCTCAGGATTGCTCCTGGAGACCC GACTTCAGTGAGCCAGGCCTGAGGATTGCTCCTGGAGACCC Direct Loss 1 0.920004525569703 1 0.937892377376556 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control TROAP ENSG00000135451 CDS Human protein_coding chr12:49720471 chr12:49720471 stopgain 0.993 0 21 hm5C_associated_SNPs_786 0 0 1 0 2 TROAP chr12:49720451 3'AG 49720451 Downstream 21bp
chr12 49720471 49720471 1 + C G CESC 49720471 + 49720451 49720491 41 GACTTCAGTGAGCCAGGCCTCAGGATTGCTCCTGGAGACCC GACTTCAGTGAGCCAGGCCTGAGGATTGCTCCTGGAGACCC Direct Loss 1 0.920004525569703 1 0.937892377376556 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control TROAP ENSG00000135451 CDS Human protein_coding chr12:49720471 chr12:49720471 stopgain 0.993 0 21 hm5C_associated_SNPs_786 0 0 1 0 2 TROAP chr12:49720503 5'GT 49720503 Upstream 33bp
chr20 44571747 44571747 1 + C T CESC 44571747 + 44571727 44571767 41 GTCCTGCAGGCATTGAGCCTCCACGGGAGTCTTTCAACCGC GTCCTGCAGGCATTGAGCCTTCACGGGAGTCTTTCAACCGC Direct Loss 1 0.38524530699285 1 0.295347690582275 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44571747 chr20:44571747 nonsynonymous SNV 0.664 4 21 hm5C_associated_SNPs_787 0 0 0 0 1 PCIF1 chr20:44571736 3'AG 44571736 Downstream 12bp
chr7 73609171 73609171 1 + C T CESC 73609171 + 73609151 73609191 41 TTCAGAGATGGCCCTCCCCTCCGTGGATCCAACATGGATTT TTCAGAGATGGCCCTCCCCTTCGTGGATCCAACATGGATTT Direct Loss 1 0.528861539854357 1 0.104833662509918 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4H ENSG00000106682 CDS Human protein_coding chr7:73609171 chr7:73609171 synonymous SNV . 0 21 hm5C_associated_SNPs_788 0 0 1 0 1 EIF4H chr7:73609208 5'GT 73609208 Upstream 38bp
chr7 142458521 142458521 1 + C T CESC 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGGTGGCTCCCTTATCAACGAACAGTGGGTGGT Direct Loss 1 0.483331794293817 1 0.750638961791992 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458521 synonymous SNV . 0 21 hm5C_associated_SNPs_789 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 42bp
chr7 142458521 142458521 1 + C T CESC 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGGTGGCTCCCTTATCAACGAACAGTGGGTGGT Direct Loss 1 0.483331794293817 1 0.750638961791992 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458521 synonymous SNV . 0 21 hm5C_associated_SNPs_789 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 45bp
chr20 39744076 39744076 1 + C G CESC 39744076 + 39744056 39744096 41 GATGATCTTTTTGATAGACTCAATGTGAGTAGATGAAGCAC GATGATCTTTTTGATAGACTGAATGTGAGTAGATGAAGCAC Direct Loss 1 0.471891342819845 1 0.136706441640854 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TOP1 ENSG00000198900 CDS Human protein_coding chr20:39744076 chr20:39744076 synonymous SNV . 0 21 hm5C_associated_SNPs_790 0 0 1 0 2 TOP1 chr20:39744011 3'AG 39744011 Downstream 66bp
chr20 39744076 39744076 1 + C G CESC 39744076 + 39744056 39744096 41 GATGATCTTTTTGATAGACTCAATGTGAGTAGATGAAGCAC GATGATCTTTTTGATAGACTGAATGTGAGTAGATGAAGCAC Direct Loss 1 0.471891342819845 1 0.136706441640854 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TOP1 ENSG00000198900 CDS Human protein_coding chr20:39744076 chr20:39744076 synonymous SNV . 0 21 hm5C_associated_SNPs_790 0 0 1 0 2 TOP1 chr20:39744079 5'GT 39744079 Upstream 4bp
chr20 62904609 62904609 1 + C T CESC 62904609 + 62904589 62904629 41 GCAGCCTCCAGGACTTGGCTCGCATCGCCATCCGGGGCACC GCAGCCTCCAGGACTTGGCTTGCATCGCCATCCGGGGCACC Direct Loss 1 0.373272161644136 1 0.0183124840259552 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCMTD2 ENSG00000203880 CDS Human protein_coding chr20:62904609 chr20:62904609 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_791 0 0 1 0 1 PCMTD2 chr20:62904574 3'AG 62904574 Downstream 36bp
chr16 22237252 22237252 1 + C T CHOL 22237252 + 22237232 22237272 41 GCAACCTAACAAAAAGTGAGCGGTATAGCTCCAGCGGGTCC GCAACCTAACAAAAAGTGAGTGGTATAGCTCCAGCGGGTCC Direct Loss 1 0.417290285333719 1 0.397134870290756 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EEF2K ENSG00000103319 CDS Human protein_coding chr16:22237252 chr16:22237252 nonsynonymous SNV 0.011 1 21 hm5C_associated_SNPs_793 0 0 0 0 1 EEF2K chr16:22237296 5'GT 22237296 Upstream 45bp
chr7 142459799 142459799 1 + C T COAD 142459799 + 142459779 142459819 41 ATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCC ATCAACGCCCGCGTGTCCACTATCTCTCTGCCCACCGCCCC Direct Loss 1 0.426467101328937 1 0.12717804312706 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459799 chr7:142459799 synonymous SNV . 0 21 hm5C_associated_SNPs_794 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 80bp
chr14 102466397 102466397 1 + C T COAD 102466397 + 102466377 102466417 41 AAGTTTGGTAGGCTGAAGGACGACAGAGAGAAGTGTGCAAA AAGTTTGGTAGGCTGAAGGATGACAGAGAGAAGTGTGCAAA Direct Loss 1 0.304947937524647 1 0.144290924072266 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466397 chr14:102466397 synonymous SNV . 0 21 hm5C_associated_SNPs_795 0 0 1 0 2 DYNC1H1 chr14:102466326 3'AG 102466326 Downstream 72bp
chr14 102466397 102466397 1 + C T COAD 102466397 + 102466377 102466417 41 AAGTTTGGTAGGCTGAAGGACGACAGAGAGAAGTGTGCAAA AAGTTTGGTAGGCTGAAGGATGACAGAGAGAAGTGTGCAAA Direct Loss 1 0.304947937524647 1 0.144290924072266 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466397 chr14:102466397 synonymous SNV . 0 21 hm5C_associated_SNPs_795 0 0 1 0 2 DYNC1H1 chr14:102466481 5'GT 102466481 Upstream 85bp
chr1 206902135 206902135 1 + C T COAD 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCCGCACATCGTACGGATTGTGGATGTGTACGAGAATCT Direct Loss 1 0.506300994609649 1 0.18753108382225 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902135 synonymous SNV . 0 21 hm5C_associated_SNPs_796 0 0 1 0 2 MAPKAPK2 chr1:206902055 3'AG 206902055 Downstream 81bp
chr1 206902135 206902135 1 + C T COAD 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCCGCACATCGTACGGATTGTGGATGTGTACGAGAATCT Direct Loss 1 0.506300994609649 1 0.18753108382225 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902135 synonymous SNV . 0 21 hm5C_associated_SNPs_796 0 0 1 0 2 MAPKAPK2 chr1:206902194 5'GT 206902194 Upstream 60bp
chr11 65402839 65402839 1 + C T COAD 65402839 + 65402819 65402859 41 CGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCC CGCCCTCCCTGCTGGCGCTGTGCCATGTCCTGGATGATGCC Direct Loss 1 0.275528164099951 1 0.776579618453979 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402839 chr11:65402839 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_797 0 0 1 0 1 PCNX3 chr11:65402919 5'GT 65402919 Upstream 81bp
chr12 101680176 101680176 1 + C T COAD 101680176 + 101680156 101680196 41 GTTTTTTTTGACTATCACCTCGATCCTGGAGACTCAGGACA GTTTTTTTTGACTATCACCTTGATCCTGGAGACTCAGGACA Direct Loss 1 0.0955590517923189 1 0.0295332968235016 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101680176 chr12:101680176 nonsynonymous SNV 0.985 2 21 hm5C_associated_SNPs_799 0 0 1 0 1 UTP20 chr12:101680099 3'AG 101680099 Downstream 78bp
chr2 233128132 233128132 1 + C T COAD 233128132 + 233128112 233128152 41 CAGCAGCGCTTTGTGGACGGCGCACTTCGTTTGGATCAGGT CAGCAGCGCTTTGTGGACGGTGCACTTCGTTTGGATCAGGT Direct Loss 1 0.138348212262714 1 0.435996353626251 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DIS3L2 ENSG00000144535 CDS Human protein_coding chr2:233128132 chr2:233128132 synonymous SNV . 0 21 hm5C_associated_SNPs_800 0 0 0 0 1 DIS3L2 chr2:233128150 5'GT 233128150 Upstream 19bp
chr11 10774310 10774310 1 + C A COAD 10774310 + 10774290 10774330 41 ACAACTGCACATATGGATTGCTTTGGCGGTCAGTATTCATG ACAACTGCACATATGGATTGATTTGGCGGTCAGTATTCATG Direct Loss 1 0.0803117338515295 1 0.00967329740524292 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTR9 ENSG00000198730 CDS Human protein_coding chr11:10774310 chr11:10774310 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_801 0 0 0 0 2 CTR9 chr11:10774219 3'AG 10774219 Downstream 92bp
chr11 10774310 10774310 1 + C A COAD 10774310 + 10774290 10774330 41 ACAACTGCACATATGGATTGCTTTGGCGGTCAGTATTCATG ACAACTGCACATATGGATTGATTTGGCGGTCAGTATTCATG Direct Loss 1 0.0803117338515295 1 0.00967329740524292 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTR9 ENSG00000198730 CDS Human protein_coding chr11:10774310 chr11:10774310 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_801 0 0 0 0 2 CTR9 chr11:10774317 5'GT 10774317 Upstream 8bp
chrX 153663636 153663636 1 + C T COAD 153663636 + 153663616 153663656 41 CCAGGTTCATTCTGGCCAACCGCCTCTACCCAGTGTCTGCC CCAGGTTCATTCTGGCCAACTGCCTCTACCCAGTGTCTGCC Direct Loss 1 0.380862324317657 1 0.10688129067421 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP6AP1 ENSG00000071553 CDS Human protein_coding chrX:153663636 chrX:153663636 nonsynonymous SNV 0.994 4 21 hm5C_associated_SNPs_803 0 0 1 0 1 ATP6AP1 chrX:153663620 3'AG 153663620 Downstream 17bp
chr22 26291140 26291140 1 + C T COAD 26291140 + 26291120 26291160 41 CAGCAGACGAGTGGCAGATGCGCTTCGACTGTGCTCAGATG CAGCAGACGAGTGGCAGATGTGCTTCGACTGTGCTCAGATG Direct Loss 1 0.0976837410136495 1 0.199124187231064 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26291140 chr22:26291140 nonsynonymous SNV 0.893 4 21 hm5C_associated_SNPs_804 0 0 1 0 2 MYO18B chr22:26291123 3'AG 26291123 Downstream 18bp
chr22 26291140 26291140 1 + C T COAD 26291140 + 26291120 26291160 41 CAGCAGACGAGTGGCAGATGCGCTTCGACTGTGCTCAGATG CAGCAGACGAGTGGCAGATGTGCTTCGACTGTGCTCAGATG Direct Loss 1 0.0976837410136495 1 0.199124187231064 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26291140 chr22:26291140 nonsynonymous SNV 0.893 4 21 hm5C_associated_SNPs_804 0 0 1 0 2 MYO18B chr22:26291126 3'AG 26291126 Downstream 15bp
chr9 117053104 117053104 1 + C T COAD 117053104 + 117053084 117053124 41 TAACAGGGGGAGCAGGGAGACGATGGGGACCCTGGCCCCAT TAACAGGGGGAGCAGGGAGATGATGGGGACCCTGGCCCCAT Direct Loss 1 0.380637771414852 1 0.538667559623718 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117053104 chr9:117053104 synonymous SNV . 0 21 hm5C_associated_SNPs_805 0 0 1 0 2 COL27A1 chr9:117053090 3'AG 117053090 Downstream 15bp
chr9 117053104 117053104 1 + C T COAD 117053104 + 117053084 117053124 41 TAACAGGGGGAGCAGGGAGACGATGGGGACCCTGGCCCCAT TAACAGGGGGAGCAGGGAGATGATGGGGACCCTGGCCCCAT Direct Loss 1 0.380637771414852 1 0.538667559623718 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117053104 chr9:117053104 synonymous SNV . 0 21 hm5C_associated_SNPs_805 0 0 1 0 2 COL27A1 chr9:117053197 5'GT 117053197 Upstream 94bp
chr1 22332162 22332162 1 + C A COAD 22332162 + 22332142 22332182 41 CCTCTGCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTG CCTCTGCCTGCAGGAGGGATATGACCTACCAGGTGGTGTTG Direct Loss 1 0.570060247120758 1 0.0870505571365356 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332162 chr1:22332162 nonsynonymous SNV 0.003 1 21 hm5C_associated_SNPs_806 0 0 0 0 1 CELA3A chr1:22332155 3'AG 22332155 Downstream 8bp
chr17 48696108 48696108 1 + C T COAD 48696108 + 48696088 48696128 41 TTCGTGCTGACGGCCCAGTTCGTGCTAGTCAACGTGGTGAT TTCGTGCTGACGGCCCAGTTTGTGCTAGTCAACGTGGTGAT Direct Loss 1 0.504457631520874 1 0.145267128944397 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48696108 chr17:48696108 synonymous SNV . 0 21 hm5C_associated_SNPs_810 0 0 1 0 1 CACNA1G chr17:48696016 3'AG 48696016 Downstream 93bp
chr19 30498487 30498487 1 + C A COAD 30498487 + 30498467 30498507 41 ATTTGCTAGCTGATAAAGAACTGTGGGCTCGACTTGAAGAA ATTTGCTAGCTGATAAAGAAATGTGGGCTCGACTTGAAGAA Direct Loss 1 0.669883210784913 1 0.0569188594818115 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control URI1 ENSG00000105176 CDS Human protein_coding chr19:30498487 chr19:30498487 nonsynonymous SNV 0.992 4 21 hm5C_associated_SNPs_811 0 0 1 0 1 URI1 chr19:30498545 5'GT 30498545 Upstream 59bp
chr16 1551467 1551467 1 + C T COAD 1551467 + 1551447 1551487 41 GCTGCTGGCCTTGGCCTCCCCCCAGCCTGCGGGTGACGGCG GCTGCTGGCCTTGGCCTCCCTCCAGCCTGCGGGTGACGGCG Direct Loss 1 0.357098137509681 1 0.699783742427826 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1551467 chr16:1551467 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_812 0 0 1 0 2 TELO2 chr16:1551421 3'AG 1551421 Downstream 47bp
chr16 1551467 1551467 1 + C T COAD 1551467 + 1551447 1551487 41 GCTGCTGGCCTTGGCCTCCCCCCAGCCTGCGGGTGACGGCG GCTGCTGGCCTTGGCCTCCCTCCAGCCTGCGGGTGACGGCG Direct Loss 1 0.357098137509681 1 0.699783742427826 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1551467 chr16:1551467 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_812 0 0 1 0 2 TELO2 chr16:1551500 5'GT 1551500 Upstream 34bp
chr22 29439389 29439389 1 + C T COAD 29439389 + 29439369 29439409 41 TCAACAAGCAGAAAGTGGCTCGAGCAAGGATCCAGCACCGC TCAACAAGCAGAAAGTGGCTTGAGCAAGGATCCAGCACCGC Direct Loss 1 0.317232258353003 1 0.103974103927612 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29439389 chr22:29439389 stopgain 0.996 1 21 hm5C_associated_SNPs_813 0 0 1 0 1 ZNRF3 chr22:29439418 5'GT 29439418 Upstream 30bp
chr7 128407566 128407566 1 + C T COAD 128407566 + 128407546 128407586 41 CAGAATGGGTAAAGACAGAGCGAGAGCAGTTTGTTGAGTTT CAGAATGGGTAAAGACAGAGTGAGAGCAGTTTGTTGAGTTT Direct Loss 1 0.802485977726202 1 0.719535410404205 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALU ENSG00000128595 CDS Human protein_coding chr7:128407566 chr7:128407566 stopgain 0.998 1 21 hm5C_associated_SNPs_814 0 0 1 0 1 CALU chr7:128407510 3'AG 128407510 Downstream 57bp
chr10 75871762 75871762 1 + C T COAD 75871762 + 75871742 75871782 41 GTCCCCCCTGACATGGAAGACGATTACGAACCTGAGCTGCT GTCCCCCCTGACATGGAAGATGATTACGAACCTGAGCTGCT Direct Loss 1 0.0943004878168048 1 0.0955229997634888 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75871762 chr10:75871762 synonymous SNV . 0 21 hm5C_associated_SNPs_815 2 0 0 0 1 VCL chr10:75871667 3'AG 75871667 Downstream 96bp
chr7 130021519 130021519 1 + C T COAD 130021519 + 130021499 130021539 41 CTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATC CTGGCTCCCCCATCGACGTCTGAGTGCCCTTCCCCAGCATC Direct Loss 1 0.422149557912066 1 0.285954773426056 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021519 chr7:130021519 stopgain 0.899 1 21 hm5C_associated_SNPs_816 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 49bp
chr7 130021519 130021519 1 + C T COAD 130021519 + 130021499 130021539 41 CTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATC CTGGCTCCCCCATCGACGTCTGAGTGCCCTTCCCCAGCATC Direct Loss 1 0.422149557912066 1 0.285954773426056 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021519 chr7:130021519 stopgain 0.899 1 21 hm5C_associated_SNPs_816 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 3bp
chr2 209218844 209218844 1 + C T COAD 209218844 + 209218824 209218864 41 ATTATTCTTTGCTGGTTGGGCGAGATGATACTAGCAATGAG ATTATTCTTTGCTGGTTGGGTGAGATGATACTAGCAATGAG Direct Loss 1 0.57870131264139 1 0.473301559686661 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PIKFYVE ENSG00000115020 CDS Human protein_coding chr2:209218844 chr2:209218844 stopgain 1.000 1 21 hm5C_associated_SNPs_817 0 0 0 0 1 PIKFYVE chr2:209218883 5'GT 209218883 Upstream 40bp
chr7 27833973 27833973 1 + C T COAD 27833973 + 27833953 27833993 41 TAATGTCTTCACAAAGAAAACGGGGAATCAGCAGAAAGTGA TAATGTCTTCACAAAGAAAATGGGGAATCAGCAGAAAGTGA Direct Loss 1 0.722307018488931 1 0.538338184356689 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27833973 chr7:27833973 nonsynonymous SNV 0.931 0 21 hm5C_associated_SNPs_818 0 0 1 0 2 TAX1BP1 chr7:27833942 3'AG 27833942 Downstream 32bp
chr7 27833973 27833973 1 + C T COAD 27833973 + 27833953 27833993 41 TAATGTCTTCACAAAGAAAACGGGGAATCAGCAGAAAGTGA TAATGTCTTCACAAAGAAAATGGGGAATCAGCAGAAAGTGA Direct Loss 1 0.722307018488931 1 0.538338184356689 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27833973 chr7:27833973 nonsynonymous SNV 0.931 0 21 hm5C_associated_SNPs_818 0 0 1 0 2 TAX1BP1 chr7:27834065 5'GT 27834065 Upstream 93bp
chr11 65396110 65396110 1 + C T COAD 65396110 + 65396090 65396130 41 CGTTTCGTGCTGACCTACATCGCGCCCTGGCAGATCACCTG CGTTTCGTGCTGACCTACATTGCGCCCTGGCAGATCACCTG Direct Loss 1 0.490537466253975 1 0.681828081607819 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65396110 chr11:65396110 synonymous SNV . 0 21 hm5C_associated_SNPs_820 0 0 0 0 2 PCNX3 chr11:65396066 3'AG 65396066 Downstream 45bp
chr11 65396110 65396110 1 + C T COAD 65396110 + 65396090 65396130 41 CGTTTCGTGCTGACCTACATCGCGCCCTGGCAGATCACCTG CGTTTCGTGCTGACCTACATTGCGCCCTGGCAGATCACCTG Direct Loss 1 0.490537466253975 1 0.681828081607819 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65396110 chr11:65396110 synonymous SNV . 0 21 hm5C_associated_SNPs_820 0 0 0 0 2 PCNX3 chr11:65396174 5'GT 65396174 Upstream 65bp
chr3 184042675 184042675 1 + C T COAD 184042675 + 184042655 184042695 41 GTGAATGGCAGGCAGAGGAACGAGGACGCCTGAAGGAAGAG GTGAATGGCAGGCAGAGGAATGAGGACGCCTGAAGGAAGAG Direct Loss 1 0.599816295469271 1 0.541805028915405 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042675 chr3:184042675 stopgain 0.991 0 21 hm5C_associated_SNPs_822 0 0 1 0 1 EIF4G1 chr3:184042666 3'AG 184042666 Downstream 10bp
chr13 100188911 100188911 1 + C G COAD 100188911 + 100188891 100188931 41 GTTACGATGTTGAAGATGGTCAGAGGTTCTGTAATCCTGGA GTTACGATGTTGAAGATGGTGAGAGGTTCTGTAATCCTGGA Direct Loss 1 0.772380641481973 1 0.353776693344116 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TM9SF2 ENSG00000125304 CDS Human protein_coding chr13:100188911 chr13:100188911 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_823 0 0 1 0 1 TM9SF2 chr13:100188862 3'AG 100188862 Downstream 50bp
chr11 67815433 67815433 1 + C T COAD 67815433 + 67815413 67815453 41 GGACCCTACCCCTTTGGCATCGATCCTGTGAGTCCTGGGAT GGACCCTACCCCTTTGGCATTGATCCTGTGAGTCCTGGGAT Direct Loss 1 0.122775845388927 1 0.132757753133774 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815433 chr11:67815433 synonymous SNV . 0 21 hm5C_associated_SNPs_824 0 0 0 0 2 TCIRG1 chr11:67815349 3'AG 67815349 Downstream 85bp
chr11 67815433 67815433 1 + C T COAD 67815433 + 67815413 67815453 41 GGACCCTACCCCTTTGGCATCGATCCTGTGAGTCCTGGGAT GGACCCTACCCCTTTGGCATTGATCCTGTGAGTCCTGGGAT Direct Loss 1 0.122775845388927 1 0.132757753133774 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815433 chr11:67815433 synonymous SNV . 0 21 hm5C_associated_SNPs_824 0 0 0 0 2 TCIRG1 chr11:67815439 5'GT 67815439 Upstream 7bp
chr1 22835072 22835072 1 + C A COAD 22835072 + 22835052 22835092 41 TGGTTCAGGTGGTTTCAATTCTCTGATATCAGCAGTTCTAG TGGTTCAGGTGGTTTCAATTATCTGATATCAGCAGTTCTAG Direct Loss 1 0.442196669175574 1 0.451607644557953 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22835072 chr1:22835072 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_825 0 0 1 0 1 ZBTB40 chr1:22835023 3'AG 22835023 Downstream 50bp
chr12 101711340 101711340 1 + C T COAD 101711340 + 101711320 101711360 41 GGGATGGTGGCAGAGGAAATCGAAGAGGAACCTGCCGCAGG GGGATGGTGGCAGAGGAAATTGAAGAGGAACCTGCCGCAGG Direct Loss 1 0.704065745029266 1 0.781430900096893 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711340 chr12:101711340 synonymous SNV . 0 21 hm5C_associated_SNPs_826 0 0 1 0 1 UTP20 chr12:101711256 3'AG 101711256 Downstream 85bp
chr5 133909449 133909449 1 + C T COAD 133909449 + 133909429 133909469 41 TTATTGAACAGGATCTGTGTCGAGGTAGGCGCCTTCCCCAC TTATTGAACAGGATCTGTGTTGAGGTAGGCGCCTTCCCCAC Direct Loss 1 0.759364459581918 1 0.840532302856445 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JADE2 ENSG00000043143 CDS Human protein_coding chr5:133909449 chr5:133909449 stopgain 0.997 0 21 hm5C_associated_SNPs_827 0 0 1 0 1 JADE2 chr5:133909452 5'GT 133909452 Upstream 4bp
chr9 131455942 131455942 1 + C T COAD 131455942 + 131455922 131455962 41 GACGAAACGTTCGAGTCAAACGCAGAATAAAGCCAGCAGGA GACGAAACGTTCGAGTCAAATGCAGAATAAAGCCAGCAGGA Direct Loss 1 0.792952466090778 1 0.719130039215088 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SET ENSG00000119335 CDS Human protein_coding chr9:131455942 chr9:131455942 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_828 0 0 1 1 1 SET chr9:131455917 3'AG 131455917 Downstream 26bp
chr5 72187658 72187658 1 + C T COAD 72187658 + 72187638 72187678 41 AATATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGG AATATATTCAGATGCTAATGTCTCCACTGATCCAGAAATGG Direct Loss 1 0.0167376399551516 1 0.268950164318085 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187658 chr5:72187658 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_829 0 0 1 0 2 TNPO1 chr5:72187637 3'AG 72187637 Downstream 22bp
chr5 72187658 72187658 1 + C T COAD 72187658 + 72187638 72187678 41 AATATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGG AATATATTCAGATGCTAATGTCTCCACTGATCCAGAAATGG Direct Loss 1 0.0167376399551516 1 0.268950164318085 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187658 chr5:72187658 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_829 0 0 1 0 2 TNPO1 chr5:72187723 5'GT 72187723 Upstream 66bp
chr20 37159852 37159852 1 + C A COAD 37159852 + 37159832 37159872 41 AGATTCAGCACTTTTGGAAGCCATTGGTTGCCAGATGGAGA AGATTCAGCACTTTTGGAAGACATTGGTTGCCAGATGGAGA Direct Loss 1 0.0204094193089379 1 0.0588981211185455 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37159852 chr20:37159852 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_830 0 0 1 0 2 RALGAPB chr20:37159810 3'AG 37159810 Downstream 43bp
chr20 37159852 37159852 1 + C A COAD 37159852 + 37159832 37159872 41 AGATTCAGCACTTTTGGAAGCCATTGGTTGCCAGATGGAGA AGATTCAGCACTTTTGGAAGACATTGGTTGCCAGATGGAGA Direct Loss 1 0.0204094193089379 1 0.0588981211185455 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37159852 chr20:37159852 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_830 0 0 1 0 2 RALGAPB chr20:37159874 5'GT 37159874 Upstream 23bp
chr1 145663167 145663167 1 + C T COAD 145663167 + 145663147 145663187 41 GGTCTTTACTAGCTTTGGGGCCATTTGGATCACACGATGTT GGTCTTTACTAGCTTTGGGGTCATTTGGATCACACGATGTT Direct Loss 1 0.0244440956908374 1 0.0561688244342804 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF115 ENSG00000121848 CDS Human other chr1:145663167 chr1:145663167 synonymous SNV . 0 21 hm5C_associated_SNPs_831 0 0 1 0 1 RNF115 chr1:145663159 3'AG 145663159 Downstream 9bp
chr14 73576075 73576075 1 + C T COAD 73576075 + 73576055 73576095 41 GTGCTCTTCAGAAAAGGTTGCGTGATAGAGAAAAGGAAATG GTGCTCTTCAGAAAAGGTTGTGTGATAGAGAAAAGGAAATG Direct Loss 1 0.448230635244769 1 0.137890577316284 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73576075 chr14:73576075 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_832 0 0 1 0 1 RBM25 chr14:73576050 3'AG 73576050 Downstream 26bp
chr14 75746599 75746599 1 + C T COAD 75746599 + 75746579 75746619 41 GGACTTCTGCACGGACCTGGCCGTCTCCAGTGCCAACTTCA GGACTTCTGCACGGACCTGGTCGTCTCCAGTGCCAACTTCA Direct Loss 1 0.0613805725758228 1 0.0197004079818726 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746599 chr14:75746599 nonsynonymous SNV 0.981 0 21 hm5C_associated_SNPs_833 0 0 1 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 20bp
chr15 74240213 74240213 1 + C T COAD 74240213 + 74240193 74240233 41 TGCCAGTGGATCGACATAACCGACGTGCAGCCTGGGAACTA TGCCAGTGGATCGACATAACTGACGTGCAGCCTGGGAACTA Direct Loss 1 0.707377696095528 1 0.125962823629379 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LOXL1 ENSG00000129038 CDS Human protein_coding chr15:74240213 chr15:74240213 synonymous SNV . 0 21 hm5C_associated_SNPs_835 0 0 0 0 2 LOXL1 chr15:74240148 3'AG 74240148 Downstream 66bp
chr15 74240213 74240213 1 + C T COAD 74240213 + 74240193 74240233 41 TGCCAGTGGATCGACATAACCGACGTGCAGCCTGGGAACTA TGCCAGTGGATCGACATAACTGACGTGCAGCCTGGGAACTA Direct Loss 1 0.707377696095528 1 0.125962823629379 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LOXL1 ENSG00000129038 CDS Human protein_coding chr15:74240213 chr15:74240213 synonymous SNV . 0 21 hm5C_associated_SNPs_835 0 0 0 0 2 LOXL1 chr15:74240243 5'GT 74240243 Upstream 31bp
chr11 9462007 9462007 1 + C T COAD 9462007 + 9461987 9462027 41 ATTATGACTTGGCAGAGGAACTGGGGAGTGATGAAGATGAT ATTATGACTTGGCAGAGGAATTGGGGAGTGATGAAGATGAT Direct Loss 1 0.627555755433314 1 0.3639195561409 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9462007 chr11:9462007 synonymous SNV . 0 21 hm5C_associated_SNPs_836 0 0 1 0 1 IPO7 chr11:9462002 3'AG 9462002 Downstream 6bp
chr20 43545459 43545459 1 + C T COAD 43545459 + 43545439 43545479 41 CATTTTGAGACCCATGAGGCCGCACAGCAGGCCATCAACAC CATTTTGAGACCCATGAGGCTGCACAGCAGGCCATCAACAC Direct Loss 1 0.2464612920911 1 0.0618321597576141 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545459 chr20:43545459 synonymous SNV . 0 21 hm5C_associated_SNPs_837 0 0 1 1 1 PABPC1L chr20:43545397 3'AG 43545397 Downstream 63bp
chr12 52380706 52380706 1 + C T COAD 52380706 + 52380686 52380726 41 GCTTGTATATTGGGAGATTGCTCGAAGATGCAATTCTGGAG GCTTGTATATTGGGAGATTGTTCGAAGATGCAATTCTGGAG Direct Loss 1 0.919526476198712 1 0.642359852790833 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52380706 chr12:52380706 nonsynonymous SNV 0.992 4 21 hm5C_associated_SNPs_839 0 0 1 0 1 ACVR1B chr12:52380726 5'GT 52380726 Upstream 21bp
chr1 156255378 156255378 1 + C T COAD 156255378 + 156255358 156255398 41 CCGAAGACGATGCCAACCTGCTGCCTGAGAAAGCGGCCCGT CCGAAGACGATGCCAACCTGTTGCCTGAGAAAGCGGCCCGT Direct Loss 1 0.36615369207905 1 0.124197214841843 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM79 ENSG00000163472 CDS Human protein_coding chr1:156255378 chr1:156255378 synonymous SNV . 0 21 hm5C_associated_SNPs_840 0 0 0 0 1 TMEM79 chr1:156255316 3'AG 156255316 Downstream 63bp
chr3 15287176 15287176 1 + C T COAD 15287176 + 15287156 15287196 41 ACACAATCCATTACACGGTTCGGGTAAGTAAAACCAACACA ACACAATCCATTACACGGTTTGGGTAAGTAAAACCAACACA Direct Loss 1 0.40639735236491 1 0.395789682865143 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAPN7 ENSG00000131375 CDS Human protein_coding chr3:15287176 chr3:15287176 nonsynonymous SNV 0.926 4 21 hm5C_associated_SNPs_841 0 0 1 0 1 CAPN7 chr3:15287178 5'GT 15287178 Upstream 3bp
chr11 73073732 73073732 1 + C T COAD 73073732 + 73073712 73073752 41 TTCGCCCAGCCCCTCGGGGACGCTGCAGAGCCAGGCCAGCC TTCGCCCAGCCCCTCGGGGATGCTGCAGAGCCAGGCCAGCC Direct Loss 1 0.178740339254692 1 0.222225785255432 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73073732 chr11:73073732 nonsynonymous SNV 0.941 4 21 hm5C_associated_SNPs_843 0 0 0 0 1 ARHGEF17 chr11:73073779 5'GT 73073779 Upstream 48bp
chr11 125513698 125513698 1 + C T COAD 125513698 + 125513678 125513718 41 CTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGT CTTTTTTAGGGGCAAAAAGGTCCCGAGTCACTTCAGGTGGT Direct Loss 1 0.290853739184248 1 0.445923268795013 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513698 chr11:125513698 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_844 0 0 1 2 2 CHEK1 chr11:125513687 3'AG 125513687 Downstream 12bp
chr11 125513698 125513698 1 + C T COAD 125513698 + 125513678 125513718 41 CTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGT CTTTTTTAGGGGCAAAAAGGTCCCGAGTCACTTCAGGTGGT Direct Loss 1 0.290853739184248 1 0.445923268795013 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513698 chr11:125513698 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_844 0 0 1 2 2 CHEK1 chr11:125513795 5'GT 125513795 Upstream 98bp
chr12 69044226 69044226 1 + C T COAD 69044226 + 69044206 69044246 41 TGTAGAAAAATACGATCCTACGATAGAAGATTCTTATAGAA TGTAGAAAAATACGATCCTATGATAGAAGATTCTTATAGAA Direct Loss 1 0.462502012823242 1 0.26859050989151 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAP1B ENSG00000127314 CDS Human protein_coding chr12:69044226 chr12:69044226 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_845 0 0 0 0 2 RAP1B chr12:69044180 3'AG 69044180 Downstream 47bp
chr12 69044226 69044226 1 + C T COAD 69044226 + 69044206 69044246 41 TGTAGAAAAATACGATCCTACGATAGAAGATTCTTATAGAA TGTAGAAAAATACGATCCTATGATAGAAGATTCTTATAGAA Direct Loss 1 0.462502012823242 1 0.26859050989151 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAP1B ENSG00000127314 CDS Human protein_coding chr12:69044226 chr12:69044226 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_845 0 0 0 0 2 RAP1B chr12:69044248 5'GT 69044248 Upstream 23bp
chr1 109811555 109811555 1 + C T COAD 109811555 + 109811535 109811575 41 TTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGGG TTGCTGGGGCCAAGCTGCCCTGCTACGAGGCCCTGCGTGGG Direct Loss 1 0.325479481668194 1 0.433158814907074 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811555 chr1:109811555 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_846 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 54bp
chr1 109811555 109811555 1 + C T COAD 109811555 + 109811535 109811575 41 TTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGGG TTGCTGGGGCCAAGCTGCCCTGCTACGAGGCCCTGCGTGGG Direct Loss 1 0.325479481668194 1 0.433158814907074 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811555 chr1:109811555 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_846 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 76bp
chr19 42392911 42392911 1 + C T COAD 42392911 + 42392891 42392931 41 GGCCCTCCTGCAGCACGTGGCCCTGCAGTTTGAGCCAGGAC GGCCCTCCTGCAGCACGTGGTCCTGCAGTTTGAGCCAGGAC Direct Loss 1 0.0830601226215868 1 0.0578704476356506 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42392911 chr19:42392911 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_847 0 0 1 0 2 ARHGEF1 chr19:42392823 3'AG 42392823 Downstream 89bp
chr19 42392911 42392911 1 + C T COAD 42392911 + 42392891 42392931 41 GGCCCTCCTGCAGCACGTGGCCCTGCAGTTTGAGCCAGGAC GGCCCTCCTGCAGCACGTGGTCCTGCAGTTTGAGCCAGGAC Direct Loss 1 0.0830601226215868 1 0.0578704476356506 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42392911 chr19:42392911 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_847 0 0 1 0 2 ARHGEF1 chr19:42392936 5'GT 42392936 Upstream 26bp
chr10 118314737 118314737 1 + C T COAD 118314737 + 118314717 118314757 41 AGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGCC AGGGCACACCTGAATTAGTCTGATTGGACCCCAGCGATGCC Direct Loss 1 0.243906398465428 1 0.0661150813102722 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314737 chr10:118314737 stopgain 0.993 1 21 hm5C_associated_SNPs_849 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 73bp
chr12 109547637 109547637 1 + C T COAD 109547637 + 109547617 109547657 41 TTCTTGATCTTTTTCAGAAGCGGCACCATGTACTACAGACG TTCTTGATCTTTTTCAGAAGTGGCACCATGTACTACAGACG Direct Loss 1 0.561620339265628 1 0.15120255947113 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109547637 chr12:109547637 nonsynonymous SNV 0.994 4 21 hm5C_associated_SNPs_850 0 0 1 0 1 UNG chr12:109547634 3'AG 109547634 Downstream 4bp
chr1 22307561 22307561 1 + C T COAD 22307561 + 22307541 22307581 41 ACCTACCAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAA ACCTACCAGGTGGTGTTGGGTGAGTACGACCGTGCTGTGAA Direct Loss 1 0.645215160889123 1 0.239382892847061 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307561 chr1:22307561 synonymous SNV . 0 21 hm5C_associated_SNPs_852 0 0 0 0 1 CELA3B chr1:22307531 3'AG 22307531 Downstream 31bp
chr7 77214878 77214878 1 + C T COAD 77214878 + 77214858 77214898 41 AGATCATTGTAATGGCCTGCCGAGAATTTGAGATGGGAAGG AGATCATTGTAATGGCCTGCTGAGAATTTGAGATGGGAAGG Direct Loss 1 0.794293973091604 1 0.482620060443878 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77214878 chr7:77214878 stopgain 1.000 1 21 hm5C_associated_SNPs_853 0 0 1 1 1 PTPN12 chr7:77214860 3'AG 77214860 Downstream 19bp
chr5 179146762 179146762 1 + C T COAD 179146762 + 179146742 179146782 41 GAGTACGTACCTGATCCAGACGCAGAGAAACCTGAGGATTG GAGTACGTACCTGATCCAGATGCAGAGAAACCTGAGGATTG Direct Loss 1 0.559863241069815 1 0.144998729228973 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179146762 chr5:179146762 synonymous SNV . 0 21 hm5C_associated_SNPs_854 0 0 1 0 2 CANX chr5:179146669 3'AG 179146669 Downstream 94bp
chr5 179146762 179146762 1 + C T COAD 179146762 + 179146742 179146782 41 GAGTACGTACCTGATCCAGACGCAGAGAAACCTGAGGATTG GAGTACGTACCTGATCCAGATGCAGAGAAACCTGAGGATTG Direct Loss 1 0.559863241069815 1 0.144998729228973 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179146762 chr5:179146762 synonymous SNV . 0 21 hm5C_associated_SNPs_854 0 0 1 0 2 CANX chr5:179146782 5'GT 179146782 Upstream 21bp
chr15 34517761 34517761 1 + C T COAD 34517761 + 34517741 34517781 41 CGAAGTGACCGGGGCAGTGGCCAGGGAGACTCGCTCTACCC CGAAGTGACCGGGGCAGTGGTCAGGGAGACTCGCTCTACCC Direct Loss 1 0.870736288270061 1 0.771359086036682 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMC4 ENSG00000128463 CDS Human protein_coding chr15:34517761 chr15:34517761 synonymous SNV . 0 21 hm5C_associated_SNPs_855 0 0 1 1 2 EMC4 chr15:34517737 3'AG 34517737 Downstream 25bp
chr15 34517761 34517761 1 + C T COAD 34517761 + 34517741 34517781 41 CGAAGTGACCGGGGCAGTGGCCAGGGAGACTCGCTCTACCC CGAAGTGACCGGGGCAGTGGTCAGGGAGACTCGCTCTACCC Direct Loss 1 0.870736288270061 1 0.771359086036682 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMC4 ENSG00000128463 CDS Human protein_coding chr15:34517761 chr15:34517761 synonymous SNV . 0 21 hm5C_associated_SNPs_855 0 0 1 1 2 EMC4 chr15:34517851 5'GT 34517851 Upstream 91bp
chr20 35866808 35866808 1 + C T COAD 35866808 + 35866788 35866828 41 CCTCTTTCCTTTGGCAGGATCGCTGCAGAGCAGAGCAGTAG CCTCTTTCCTTTGGCAGGATTGCTGCAGAGCAGAGCAGTAG Direct Loss 1 0.311319844424801 1 0.117760986089706 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35866808 chr20:35866808 synonymous SNV . 0 21 hm5C_associated_SNPs_856 0 0 1 0 2 RPN2 chr20:35866805 3'AG 35866805 Downstream 4bp
chr20 35866808 35866808 1 + C T COAD 35866808 + 35866788 35866828 41 CCTCTTTCCTTTGGCAGGATCGCTGCAGAGCAGAGCAGTAG CCTCTTTCCTTTGGCAGGATTGCTGCAGAGCAGAGCAGTAG Direct Loss 1 0.311319844424801 1 0.117760986089706 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35866808 chr20:35866808 synonymous SNV . 0 21 hm5C_associated_SNPs_856 0 0 1 0 2 RPN2 chr20:35866852 5'GT 35866852 Upstream 45bp
chr21 45736382 45736382 1 + C T COAD 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACGTGCAGCGGGGAGGGATGCCCTCTGCCTTCGACCGGA Direct Loss 1 0.404871729614239 1 0.181510835886002 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736382 nonsynonymous SNV 0.394 4 21 hm5C_associated_SNPs_857 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 68bp
chr21 45736382 45736382 1 + C T COAD 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACGTGCAGCGGGGAGGGATGCCCTCTGCCTTCGACCGGA Direct Loss 1 0.404871729614239 1 0.181510835886002 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736382 nonsynonymous SNV 0.394 4 21 hm5C_associated_SNPs_857 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 26bp
chr12 6965312 6965312 1 + C T COAD 6965312 + 6965292 6965332 41 TGCCTGACATTGTCAGAGATCGGGTATGACTGCCCCCTATG TGCCTGACATTGTCAGAGATTGGGTATGACTGCCCCCTATG Direct Loss 1 0.804323424189166 1 0.837440371513367 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control USP5 ENSG00000111667 CDS Human protein_coding chr12:6965312 chr12:6965312 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_858 0 0 1 0 1 USP5 chr12:6965314 5'GT 6965314 Upstream 3bp
chr9 131247109 131247109 1 + C T COAD 131247109 + 131247089 131247129 41 CCATCCGAGCCCAGAAGGAGCGAGCCGAGAAGAGCGAGGAG CCATCCGAGCCCAGAAGGAGTGAGCCGAGAAGAGCGAGGAG Direct Loss 1 0.43350783313357 1 0.449010848999023 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ODF2 ENSG00000136811 CDS Human protein_coding chr9:131247109 chr9:131247109 stopgain 1.000 1 21 hm5C_associated_SNPs_859 0 0 1 0 1 ODF2 chr9:131247165 5'GT 131247165 Upstream 57bp
chr14 23794460 23794460 1 + C T COAD 23794460 + 23794440 23794480 41 TCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCATGG TCCTTCTTTCTTCCAGGGGCTGGGCTAGAGCGACATCATGG Direct Loss 1 0.443374716431745 1 0.322359412908554 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23794460 chr14:23794460 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_860 0 0 1 0 1 BCL2L2-PABPN1;PABPN1 chr14:23794456 3'AG 23794456 Downstream 5bp
chr2 32673990 32673990 1 + C A COAD 32673990 + 32673970 32674010 41 AAATTGATTTATCAGATGTCCTTTCAGGTAGTGATTTCTTT AAATTGATTTATCAGATGTCATTTCAGGTAGTGATTTCTTT Direct Loss 1 0.00769762938740581 1 0.106033056974411 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673990 chr2:32673990 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_864 0 0 1 0 1 BIRC6 chr2:32673996 5'GT 32673996 Upstream 7bp
chr19 4423372 4423372 1 + C T COAD 4423372 + 4423352 4423392 41 GGAAAAAGGAAGAAGAGAAACGGTTAAGAGAAGAAGAGAAG GGAAAAAGGAAGAAGAGAAATGGTTAAGAGAAGAAGAGAAG Direct Loss 1 0.194163406106905 1 0.425950706005096 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4423372 chr19:4423372 nonsynonymous SNV 0.942 3 21 hm5C_associated_SNPs_866 0 0 1 0 2 CHAF1A chr19:4423332 3'AG 4423332 Downstream 41bp
chr19 4423372 4423372 1 + C T COAD 4423372 + 4423352 4423392 41 GGAAAAAGGAAGAAGAGAAACGGTTAAGAGAAGAAGAGAAG GGAAAAAGGAAGAAGAGAAATGGTTAAGAGAAGAAGAGAAG Direct Loss 1 0.194163406106905 1 0.425950706005096 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4423372 chr19:4423372 nonsynonymous SNV 0.942 3 21 hm5C_associated_SNPs_866 0 0 1 0 2 CHAF1A chr19:4423392 5'GT 4423392 Upstream 21bp
chr2 28002338 28002338 1 + C T COAD 28002338 + 28002318 28002358 41 TCGTGGAAAAGAAAAAAATACGCTCCCTTTAAACGGTGGAT TCGTGGAAAAGAAAAAAATATGCTCCCTTTAAACGGTGGAT Direct Loss 1 0.212361000314455 1 0.125858277082443 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPL33 ENSG00000243147 CDS Human protein_coding chr2:28002338 chr2:28002338 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_867 0 0 1 0 1 MRPL33 chr2:28002300 3'AG 28002300 Downstream 39bp
chr20 30381750 30381750 1 + C A COAD 30381750 + 30381730 30381770 41 CAAGAACTGTGGAAATATGCCCTTTCTCGTTTGATTCTCGA CAAGAACTGTGGAAATATGCACTTTCTCGTTTGATTCTCGA Direct Loss 1 0.0236944635647456 1 0.0281953811645508 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30381750 chr20:30381750 nonsynonymous SNV 0.878 3 21 hm5C_associated_SNPs_869 0 0 1 0 2 TPX2 chr20:30381651 3'AG 30381651 Downstream 100bp
chr20 30381750 30381750 1 + C A COAD 30381750 + 30381730 30381770 41 CAAGAACTGTGGAAATATGCCCTTTCTCGTTTGATTCTCGA CAAGAACTGTGGAAATATGCACTTTCTCGTTTGATTCTCGA Direct Loss 1 0.0236944635647456 1 0.0281953811645508 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30381750 chr20:30381750 nonsynonymous SNV 0.878 3 21 hm5C_associated_SNPs_869 0 0 1 0 2 TPX2 chr20:30381827 5'GT 30381827 Upstream 78bp
chr11 68204451 68204451 1 + C T COAD 68204451 + 68204431 68204471 41 CCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTGA CCCGACTGTATCGACGGCTCTGACGAGCTCATGTGTGGTGA Direct Loss 1 0.415833140199473 1 0.488582879304886 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204451 chr11:68204451 synonymous SNV . 0 21 hm5C_associated_SNPs_870 0 0 1 0 2 LRP5 chr11:68204357 3'AG 68204357 Downstream 95bp
chr11 68204451 68204451 1 + C T COAD 68204451 + 68204431 68204471 41 CCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTGA CCCGACTGTATCGACGGCTCTGACGAGCTCATGTGTGGTGA Direct Loss 1 0.415833140199473 1 0.488582879304886 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204451 chr11:68204451 synonymous SNV . 0 21 hm5C_associated_SNPs_870 0 0 1 0 2 LRP5 chr11:68204467 5'GT 68204467 Upstream 17bp
chr21 38853089 38853089 1 + C T COAD 38853089 + 38853069 38853109 41 GAAAAGTGGATGGATCGTTACGAAATTGACTCCTTGATAGG GAAAAGTGGATGGATCGTTATGAAATTGACTCCTTGATAGG Direct Loss 1 0.640245581694782 1 0.45547080039978 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38853089 chr21:38853089 synonymous SNV . 0 21 hm5C_associated_SNPs_872 0 0 1 0 1 DYRK1A chr21:38853128 5'GT 38853128 Upstream 40bp
chr2 175268839 175268839 1 + C T COAD 175268839 + 175268819 175268859 41 CTTTGAAAATAGAGGGAGTTCGTAATATTTCTAATCAACTT CTTTGAAAATAGAGGGAGTTTGTAATATTTCTAATCAACTT Direct Loss 1 0.63364217170803 1 0.251094162464142 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SCRN3 ENSG00000144306 CDS Human protein_coding chr2:175268839 chr2:175268839 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_875 0 0 1 0 1 SCRN3 chr2:175268831 3'AG 175268831 Downstream 9bp
chr9 139749738 139749738 1 + C T COAD 139749738 + 139749718 139749758 41 GGGCAGACAGGCCCGGGGGGCGTCGTGGGTCTGGACGACCT GGGCAGACAGGCCCGGGGGGTGTCGTGGGTCTGGACGACCT Direct Loss 1 0.205771144000797 1 0.257625818252563 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139749738 chr9:139749738 synonymous SNV . 0 21 hm5C_associated_SNPs_876 0 0 1 0 2 MAMDC4 chr9:139749706 3'AG 139749706 Downstream 33bp
chr9 139749738 139749738 1 + C T COAD 139749738 + 139749718 139749758 41 GGGCAGACAGGCCCGGGGGGCGTCGTGGGTCTGGACGACCT GGGCAGACAGGCCCGGGGGGTGTCGTGGGTCTGGACGACCT Direct Loss 1 0.205771144000797 1 0.257625818252563 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139749738 chr9:139749738 synonymous SNV . 0 21 hm5C_associated_SNPs_876 0 0 1 0 2 MAMDC4 chr9:139749790 5'GT 139749790 Upstream 53bp
chr2 70122252 70122252 1 + C T COAD 70122252 + 70122232 70122272 41 GGCGTTCCCGGTCCACATCCCGGGAGAGAGAACGCAGGCGC GGCGTTCCCGGTCCACATCCTGGGAGAGAGAACGCAGGCGC Direct Loss 1 0.986512195839829 1 0.867622494697571 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70122252 chr2:70122252 nonsynonymous SNV 0.950 3 21 hm5C_associated_SNPs_877 0 0 1 0 2 SNRNP27 chr2:70122226 3'AG 70122226 Downstream 27bp
chr2 70122252 70122252 1 + C T COAD 70122252 + 70122232 70122272 41 GGCGTTCCCGGTCCACATCCCGGGAGAGAGAACGCAGGCGC GGCGTTCCCGGTCCACATCCTGGGAGAGAGAACGCAGGCGC Direct Loss 1 0.986512195839829 1 0.867622494697571 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70122252 chr2:70122252 nonsynonymous SNV 0.950 3 21 hm5C_associated_SNPs_877 0 0 1 0 2 SNRNP27 chr2:70122346 5'GT 70122346 Upstream 95bp
chr7 142459652 142459652 1 + C T COAD 142459652 + 142459632 142459672 41 CAGGTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGG CAGGTGAGACTGGGAGAGCATAACATCGAAGTCCTGGAGGG Direct Loss 1 0.853306865369379 1 0.14300873875618 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459652 chr7:142459652 synonymous SNV . 0 21 hm5C_associated_SNPs_878 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 28bp
chr19 7620161 7620161 1 + C T COAD 7620161 + 7620141 7620181 41 CTCTACGAGAAGGTTTTCTCCAGGCGCGCGGACCGGCACAG CTCTACGAGAAGGTTTTCTCTAGGCGCGCGGACCGGCACAG Direct Loss 1 0.655706399668238 1 0.968588709831238 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620161 chr19:7620161 synonymous SNV . 0 21 hm5C_associated_SNPs_879 0 0 1 0 2 PNPLA6 chr19:7620135 3'AG 7620135 Downstream 27bp
chr19 7620161 7620161 1 + C T COAD 7620161 + 7620141 7620181 41 CTCTACGAGAAGGTTTTCTCCAGGCGCGCGGACCGGCACAG CTCTACGAGAAGGTTTTCTCTAGGCGCGCGGACCGGCACAG Direct Loss 1 0.655706399668238 1 0.968588709831238 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620161 chr19:7620161 synonymous SNV . 0 21 hm5C_associated_SNPs_879 0 0 1 0 2 PNPLA6 chr19:7620253 5'GT 7620253 Upstream 93bp
chr10 93695421 93695421 1 + C T COAD 93695421 + 93695401 93695441 41 TTTGTTATTTCAGGCTAGATCGCCTTTTTATTTTACTGGAT TTTGTTATTTCAGGCTAGATTGCCTTTTTATTTTACTGGAT Direct Loss 1 0.45730818610066 1 0.441728532314301 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93695421 chr10:93695421 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_880 0 0 1 0 1 BTAF1 chr10:93695414 3'AG 93695414 Downstream 8bp
chr5 122144038 122144038 1 + C T COAD 122144038 + 122144018 122144058 41 GTTTGTAGAAAAACGGAGAGCAGCTCTTGAAAGGTAATTCT GTTTGTAGAAAAACGGAGAGTAGCTCTTGAAAGGTAATTCT Direct Loss 1 0.349128051767622 1 0.139478862285614 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNX2 ENSG00000205302 CDS Human protein_coding chr5:122144038 chr5:122144038 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_881 0 0 1 0 2 SNX2 chr5:122143972 3'AG 122143972 Downstream 67bp
chr5 122144038 122144038 1 + C T COAD 122144038 + 122144018 122144058 41 GTTTGTAGAAAAACGGAGAGCAGCTCTTGAAAGGTAATTCT GTTTGTAGAAAAACGGAGAGTAGCTCTTGAAAGGTAATTCT Direct Loss 1 0.349128051767622 1 0.139478862285614 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNX2 ENSG00000205302 CDS Human protein_coding chr5:122144038 chr5:122144038 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_881 0 0 1 0 2 SNX2 chr5:122144050 5'GT 122144050 Upstream 13bp
chr11 65632544 65632544 1 + C T COAD 65632544 + 65632524 65632564 41 GGGAACCCTGAATCAGGGGCCATGACCTCTCCAAACCCTCT GGGAACCCTGAATCAGGGGCTATGACCTCTCCAAACCCTCT Direct Loss 1 0.24311900117397 1 0.130011796951294 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MUS81 ENSG00000172732 CDS Human protein_coding chr11:65632544 chr11:65632544 synonymous SNV . 0 21 hm5C_associated_SNPs_882 0 0 1 0 2 MUS81 chr11:65632488 3'AG 65632488 Downstream 57bp
chr11 65632544 65632544 1 + C T COAD 65632544 + 65632524 65632564 41 GGGAACCCTGAATCAGGGGCCATGACCTCTCCAAACCCTCT GGGAACCCTGAATCAGGGGCTATGACCTCTCCAAACCCTCT Direct Loss 1 0.24311900117397 1 0.130011796951294 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MUS81 ENSG00000172732 CDS Human protein_coding chr11:65632544 chr11:65632544 synonymous SNV . 0 21 hm5C_associated_SNPs_882 0 0 1 0 2 MUS81 chr11:65632616 5'GT 65632616 Upstream 73bp
chr21 45534115 45534115 1 + C T COAD 45534115 + 45534095 45534135 41 TCTGTGCTGCACCACTTCCACTTCAAGGGCTCTGTGCACAG TCTGTGCTGCACCACTTCCATTTCAAGGGCTCTGTGCACAG Direct Loss 1 0.753807041562689 1 0.466874927282333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45534115 chr21:45534115 synonymous SNV . 0 21 hm5C_associated_SNPs_886 0 0 1 0 2 PWP2 chr21:45534060 3'AG 45534060 Downstream 56bp
chr21 45534115 45534115 1 + C T COAD 45534115 + 45534095 45534135 41 TCTGTGCTGCACCACTTCCACTTCAAGGGCTCTGTGCACAG TCTGTGCTGCACCACTTCCATTTCAAGGGCTCTGTGCACAG Direct Loss 1 0.753807041562689 1 0.466874927282333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45534115 chr21:45534115 synonymous SNV . 0 21 hm5C_associated_SNPs_886 0 0 1 0 2 PWP2 chr21:45534159 5'GT 45534159 Upstream 45bp
chr11 95561126 95561126 1 + C T COAD 95561126 + 95561106 95561146 41 GTAACACCTCCCTCCTCCAACGGTATTAATGAGGAGTTGTC GTAACACCTCCCTCCTCCAATGGTATTAATGAGGAGTTGTC Direct Loss 1 0.639740376312128 1 0.175070703029633 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP57 ENSG00000166037 CDS Human protein_coding chr11:95561126 chr11:95561126 synonymous SNV . 0 21 hm5C_associated_SNPs_887 0 0 1 0 1 CEP57 chr11:95561191 5'GT 95561191 Upstream 66bp
chr16 30939906 30939906 1 + C A COAD 30939906 + 30939886 30939926 41 GGTTCTGAATCCGAGCCAGGCTTTCTCATCCTGCCACCCTG GGTTCTGAATCCGAGCCAGGATTTCTCATCCTGCCACCCTG Direct Loss 1 0.0713810842668096 1 0.0221398770809174 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30939906 chr16:30939906 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_888 0 0 1 0 2 FBXL19 chr16:30939949 5'GT 30939949 Upstream 44bp
chr16 30939906 30939906 1 + C A COAD 30939906 + 30939886 30939926 41 GGTTCTGAATCCGAGCCAGGCTTTCTCATCCTGCCACCCTG GGTTCTGAATCCGAGCCAGGATTTCTCATCCTGCCACCCTG Direct Loss 1 0.0713810842668096 1 0.0221398770809174 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30939906 chr16:30939906 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_888 0 0 1 0 2 FBXL19 chr16:30939951 5'GT 30939951 Upstream 46bp
chr19 14024290 14024290 1 + C T COAD 14024290 + 14024270 14024310 41 GGACATCCCGCCGCCAGTGGCCATAGGAAAAGGCCCGGCGT GGACATCCCGCCGCCAGTGGTCATAGGAAAAGGCCCGGCGT Direct Loss 1 0.264653361453198 1 0.2191461622715 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14024290 chr19:14024290 nonsynonymous SNV 0.071 2 21 hm5C_associated_SNPs_890 0 0 0 0 1 CC2D1A chr19:14024217 3'AG 14024217 Downstream 74bp
chr12 112229168 112229168 1 + C T COAD 112229168 + 112229148 112229188 41 ATTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGG ATTTGGCCCCACGGCTGGGGTCGCCATTGCCTCCCATGAGG Direct Loss 1 0.180860167981825 1 0.339537382125854 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229168 chr12:112229168 nonsynonymous SNV 0.169 2 21 hm5C_associated_SNPs_891 0 0 1 0 2 ALDH2 chr12:112229110 3'AG 112229110 Downstream 59bp
chr12 112229168 112229168 1 + C T COAD 112229168 + 112229148 112229188 41 ATTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGG ATTTGGCCCCACGGCTGGGGTCGCCATTGCCTCCCATGAGG Direct Loss 1 0.180860167981825 1 0.339537382125854 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human protein_coding chr12:112229168 chr12:112229168 nonsynonymous SNV 0.169 2 21 hm5C_associated_SNPs_891 0 0 1 0 2 ALDH2 chr12:112229223 5'GT 112229223 Upstream 56bp
chr10 73567716 73567716 1 + C T COAD 73567716 + 73567696 73567736 41 TTCTGGCCATCCACTACTTCCGGGCCCTTGCCAACGACTCT TTCTGGCCATCCACTACTTCTGGGCCCTTGCCAACGACTCT Direct Loss 1 0.190357019928254 1 0.87518322467804 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH23 ENSG00000107736 CDS Human protein_coding chr10:73567716 chr10:73567716 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_892 0 0 0 0 1 CDH23 chr10:73567764 5'GT 73567764 Upstream 49bp
chr7 4801817 4801817 1 + C A COAD 4801817 + 4801797 4801837 41 CTTCTTCCTCCACTCCAGCCCTCACCAGCCCTTTGCAGCTC CTTCTTCCTCCACTCCAGCCATCACCAGCCCTTTGCAGCTC Direct Loss 1 0.0858556092667188 1 0.0235738456249237 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4801817 chr7:4801817 nonsynonymous SNV 0.991 3 21 hm5C_associated_SNPs_894 0 0 1 0 1 FOXK1 chr7:4801815 3'AG 4801815 Downstream 3bp
chr17 17943131 17943131 1 + C T COAD 17943131 + 17943111 17943151 41 CACCCAGCAGCCCGGCGTGGCCACCAGCCTGCTCTACAGCG CACCCAGCAGCCCGGCGTGGTCACCAGCCTGCTCTACAGCG Direct Loss 1 0.104187839954836 1 0.11693274974823 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GID4 ENSG00000141034 CDS Human protein_coding chr17:17943131 chr17:17943131 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_895 0 0 0 0 1 GID4 chr17:17943216 5'GT 17943216 Upstream 86bp
chr12 112321465 112321465 1 + C T COAD 112321465 + 112321445 112321485 41 TTTTACTCCAAACACCACAGCCGGACTATCCCAAAGGATAT TTTTACTCCAAACACCACAGTCGGACTATCCCAAAGGATAT Direct Loss 1 0.37594652329725 1 0.231883496046066 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPKAPK5 ENSG00000089022 CDS Human protein_coding chr12:112321465 chr12:112321465 synonymous SNV . 0 21 hm5C_associated_SNPs_896 0 0 1 0 1 MAPKAPK5 chr12:112321385 3'AG 112321385 Downstream 81bp
chr10 45486398 45486398 1 + C T COAD 45486398 + 45486378 45486418 41 AACCACCTTCTTTTTCAGAGCGGACAAAATTAAAAGACTGC AACCACCTTCTTTTTCAGAGTGGACAAAATTAAAAGACTGC Direct Loss 1 0.0691381298771348 1 0.309061586856842 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45486398 chr10:45486398 nonsynonymous SNV 0.958 4 21 hm5C_associated_SNPs_897 0 0 0 0 1 RASSF4 chr10:45486396 3'AG 45486396 Downstream 3bp
chr11 58959625 58959625 1 + C T COAD 58959625 + 58959605 58959645 41 CCTCAGGCTACAAGGGCCCGCAGCCTACGGTAAAACCTGAC CCTCAGGCTACAAGGGCCCGTAGCCTACGGTAAAACCTGAC Direct Loss 1 0.229917079928146 1 0.285249888896942 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DTX4 ENSG00000110042 CDS Human protein_coding chr11:58959625 chr11:58959625 stopgain 0.921 0 21 hm5C_associated_SNPs_898 0 0 0 0 2 DTX4 chr11:58959571 3'AG 58959571 Downstream 55bp
chr11 58959625 58959625 1 + C T COAD 58959625 + 58959605 58959645 41 CCTCAGGCTACAAGGGCCCGCAGCCTACGGTAAAACCTGAC CCTCAGGCTACAAGGGCCCGTAGCCTACGGTAAAACCTGAC Direct Loss 1 0.229917079928146 1 0.285249888896942 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DTX4 ENSG00000110042 CDS Human protein_coding chr11:58959625 chr11:58959625 stopgain 0.921 0 21 hm5C_associated_SNPs_898 0 0 0 0 2 DTX4 chr11:58959723 5'GT 58959723 Upstream 99bp
chr11 65826382 65826382 1 + C T COAD 65826382 + 65826362 65826402 41 CCTCTGAGAGCTCTGGGGACCGGGAGAAAGACTCAACCCGG CCTCTGAGAGCTCTGGGGACTGGGAGAAAGACTCAACCCGG Direct Loss 1 0.931084743418834 1 0.953819274902344 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65826382 chr11:65826382 nonsynonymous SNV 0.991 2 21 hm5C_associated_SNPs_899 0 0 1 0 1 SF3B2 chr11:65826301 3'AG 65826301 Downstream 82bp
chr2 89028799 89028799 1 + C T COAD 89028799 + 89028779 89028819 41 TTCCCTGTCCTCCGCAGGCCCGCCAGCTCATCCTGCAGTAT TTCCCTGTCCTCCGCAGGCCTGCCAGCTCATCCTGCAGTAT Direct Loss 1 0.77235351659061 1 0.0922896265983582 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPIA ENSG00000153574 CDS Human protein_coding chr2:89028799 chr2:89028799 nonsynonymous SNV 0.813 4 21 hm5C_associated_SNPs_900 0 0 0 0 2 RPIA chr2:89028796 3'AG 89028796 Downstream 4bp
chr2 89028799 89028799 1 + C T COAD 89028799 + 89028779 89028819 41 TTCCCTGTCCTCCGCAGGCCCGCCAGCTCATCCTGCAGTAT TTCCCTGTCCTCCGCAGGCCTGCCAGCTCATCCTGCAGTAT Direct Loss 1 0.77235351659061 1 0.0922896265983582 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPIA ENSG00000153574 CDS Human protein_coding chr2:89028799 chr2:89028799 nonsynonymous SNV 0.813 4 21 hm5C_associated_SNPs_900 0 0 0 0 2 RPIA chr2:89028855 5'GT 89028855 Upstream 57bp
chr5 176522651 176522651 1 + C A COAD 176522651 + 176522631 176522671 41 TCCTCGGAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGG TCCTCGGAGCAGTGAGGGGCAGCTCTCCTTCCCAGTCCTGG Direct Loss 1 0.171259019087149 1 0.123506665229797 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522651 chr5:176522651 nonsynonymous SNV 0.449 2 21 hm5C_associated_SNPs_902 0 0 1 0 1 FGFR4 chr5:176522724 5'GT 176522724 Upstream 74bp
chr5 159437849 159437849 1 + C T COAD 159437849 + 159437829 159437869 41 AGAACTGGAAAAAAACATGTCGGATGAAGAGAAACAGGTAA AGAACTGGAAAAAAACATGTTGGATGAAGAGAAACAGGTAA Direct Loss 1 0.49096799659974 1 0.51782488822937 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TTC1 ENSG00000113312 CDS Human protein_coding chr5:159437849 chr5:159437849 nonsynonymous SNV 0.994 2 21 hm5C_associated_SNPs_904 0 0 1 0 1 TTC1 chr5:159437865 5'GT 159437865 Upstream 17bp
chr15 64448279 64448279 1 - G T COAD 64448279 - 64448259 64448299 41 AAACCCCTGAAGGATGTGATCATCGCAGACTGCGGCAAGAT AAACCCCTGAAGGATGTGATAATCGCAGACTGCGGCAAGAT Direct Loss 1 0.411804044764775 1 0.0306911170482635 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PPIB ENSG00000166794 CDS Human protein_coding chr15:64448279 chr15:64448279 synonymous SNV . 0 21 hm5C_associated_SNPs_905 0 0 1 0 1 PPIB chr15:64448344 3'AG 64448344 Downstream 66bp
chr15 22955235 22955235 1 + C T COAD 22955235 + 22955215 22955255 41 AAGGACCCCAAGAGCGGCTTCGACATAAAAGTACCACGCCG AAGGACCCCAAGAGCGGCTTTGACATAAAAGTACCACGCCG Direct Loss 1 0.781652060794559 1 0.417085647583008 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22955235 chr15:22955235 synonymous SNV . 0 21 hm5C_associated_SNPs_907 0 0 1 0 1 CYFIP1 chr15:22955280 5'GT 22955280 Upstream 46bp
chr8 124146369 124146369 1 + C T COAD 124146369 + 124146349 124146389 41 CATAGGTATATATGAGAGATCGAGAAATTGCTGCCACAGCC CATAGGTATATATGAGAGATTGAGAAATTGCTGCCACAGCC Direct Loss 1 0.805955475553534 1 0.544965147972107 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124146369 chr8:124146369 stopgain 0.987 0 21 hm5C_associated_SNPs_908 0 0 1 0 2 TBC1D31 chr8:124146354 3'AG 124146354 Downstream 16bp
chr8 124146369 124146369 1 + C T COAD 124146369 + 124146349 124146389 41 CATAGGTATATATGAGAGATCGAGAAATTGCTGCCACAGCC CATAGGTATATATGAGAGATTGAGAAATTGCTGCCACAGCC Direct Loss 1 0.805955475553534 1 0.544965147972107 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124146369 chr8:124146369 stopgain 0.987 0 21 hm5C_associated_SNPs_908 0 0 1 0 2 TBC1D31 chr8:124146446 5'GT 124146446 Upstream 78bp
chr7 142459804 142459804 1 + C A COAD 142459804 + 142459784 142459824 41 CGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAG CGCCCGCGTGTCCACCATCTATCTGCCCACCGCCCCTCCAG Direct Loss 1 0.6692039157936 1 0.0734248161315918 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459804 chr7:142459804 nonsynonymous SNV 0.004 5 21 hm5C_associated_SNPs_909 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 75bp
chr10 60549151 60549151 1 + C T COAD 60549151 + 60549131 60549171 41 TTTCAGTATCATTTAAACAGCGTTCCCGAATGTATGGTGCT TTTCAGTATCATTTAAACAGTGTTCCCGAATGTATGGTGCT Direct Loss 1 0.0124022511715459 1 0.0512466132640839 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60549151 chr10:60549151 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_910 0 0 1 0 1 BICC1 chr10:60549216 5'GT 60549216 Upstream 66bp
chr21 47929258 47929258 1 + C A COAD 47929258 + 47929238 47929278 41 CGCCCTCCACTGAAGGAGTTCTTTGTGGATGATTTTGAGGA CGCCCTCCACTGAAGGAGTTATTTGTGGATGATTTTGAGGA Direct Loss 1 0.0779962534239664 1 0.0638832449913025 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47929258 chr21:47929258 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_911 0 0 1 0 2 DIP2A chr21:47929170 3'AG 47929170 Downstream 89bp
chr21 47929258 47929258 1 + C A COAD 47929258 + 47929238 47929278 41 CGCCCTCCACTGAAGGAGTTCTTTGTGGATGATTTTGAGGA CGCCCTCCACTGAAGGAGTTATTTGTGGATGATTTTGAGGA Direct Loss 1 0.0779962534239664 1 0.0638832449913025 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47929258 chr21:47929258 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_911 0 0 1 0 2 DIP2A chr21:47929289 5'GT 47929289 Upstream 32bp
chr4 144390263 144390263 1 + C A COAD 144390263 + 144390243 144390283 41 TGACCAACAGAAGACCTTGGCTCTAAAGAGTACCCGGGAAG TGACCAACAGAAGACCTTGGATCTAAAGAGTACCCGGGAAG Direct Loss 1 0.60737246034889 1 0.784540593624115 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control GAB1 ENSG00000109458 CDS Human protein_coding chr4:144390263 chr4:144390263 nonsynonymous SNV 0.978 4 21 hm5C_associated_SNPs_914 0 0 0 0 1 GAB1 chr4:144390184 3'AG 144390184 Downstream 80bp
chr1 163310211 163310211 1 + C T COAD 163310211 + 163310191 163310231 41 ATATTTCAGAGAAAACCAAGCGTTTGGTAAACATCTTTTCT ATATTTCAGAGAAAACCAAGTGTTTGGTAAACATCTTTTCT Direct Loss 1 0.0642170277275656 1 0.0626834332942963 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUF2 ENSG00000143228 CDS Human protein_coding chr1:163310211 chr1:163310211 nonsynonymous SNV 0.990 2 21 hm5C_associated_SNPs_915 0 0 1 0 2 NUF2 chr1:163310154 3'AG 163310154 Downstream 58bp
chr1 163310211 163310211 1 + C T COAD 163310211 + 163310191 163310231 41 ATATTTCAGAGAAAACCAAGCGTTTGGTAAACATCTTTTCT ATATTTCAGAGAAAACCAAGTGTTTGGTAAACATCTTTTCT Direct Loss 1 0.0642170277275656 1 0.0626834332942963 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUF2 ENSG00000143228 CDS Human protein_coding chr1:163310211 chr1:163310211 nonsynonymous SNV 0.990 2 21 hm5C_associated_SNPs_915 0 0 1 0 2 NUF2 chr1:163310216 5'GT 163310216 Upstream 6bp
chr4 88967960 88967960 1 + C T COAD 88967960 + 88967940 88967980 41 TGGAAGAGATATTGGAAATTCGCATTCACAAACTACACTAT TGGAAGAGATATTGGAAATTTGCATTCACAAACTACACTAT Direct Loss 1 0.322084725968437 1 0.458364933729172 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKD2 ENSG00000118762 CDS Human protein_coding chr4:88967960 chr4:88967960 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_916 0 0 1 0 1 PKD2 chr4:88968022 5'GT 88968022 Upstream 63bp
chr20 55088433 55088433 1 + C T COAD 55088433 + 55088413 55088453 41 GGCACCAAGGAGGATGTGGACGTGCTGAAGACAAGGATGGA GGCACCAAGGAGGATGTGGATGTGCTGAAGACAAGGATGGA Direct Loss 1 0.430893494080252 1 0.162117272615433 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55088433 chr20:55088433 synonymous SNV . 0 21 hm5C_associated_SNPs_917 0 0 1 0 1 RTFDC1 chr20:55088484 5'GT 55088484 Upstream 52bp
chrX 105891593 105891593 1 + C T COAD 105891593 + 105891573 105891613 41 ACAAACAAAGGGAATTAAACCGGGCATGCCAAGCATCTTCA ACAAACAAAGGGAATTAAACTGGGCATGCCAAGCATCTTCA Direct Loss 1 0.702743430823221 1 0.705997467041016 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105891593 chrX:105891593 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_918 0 0 0 0 1 CXorf57 chrX:105891616 5'GT 105891616 Upstream 24bp
chr2 38908437 38908437 1 + C T COAD 38908437 + 38908417 38908457 41 TCCAGGTGCTCTGGACCCCTCGGGTGCTGTCAAATGGCGTC TCCAGGTGCTCTGGACCCCTTGGGTGCTGTCAAATGGCGTC Direct Loss 1 0.767203908871581 1 0.73688668012619 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control GALM ENSG00000143891 CDS Human protein_coding chr2:38908437 chr2:38908437 nonsynonymous SNV 0.332 1 21 hm5C_associated_SNPs_919 0 0 1 0 1 GALM chr2:38908422 3'AG 38908422 Downstream 16bp
chr1 22333994 22333994 1 + C T COAD 22333994 + 22333974 22334014 41 TGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAGT TGTGTGCTGGAGGGTACATCTGCTCCGGCTGCAACGTGAGT Direct Loss 1 0.313437315736956 1 0.150467783212662 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333994 chr1:22333994 nonsynonymous SNV 0.005 1 21 hm5C_associated_SNPs_920 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 15bp
chr12 58109596 58109596 1 + C T COAD 58109596 + 58109576 58109616 41 GACTACATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTA GACTACATCGATCGCGTGGATGAGCCCTTGTCCTGCTCTTA Direct Loss 1 0.453037423676995 1 0.399131238460541 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OS9 ENSG00000135506 CDS Human protein_coding chr12:58109596 chr12:58109596 synonymous SNV . 0 21 hm5C_associated_SNPs_921 0 0 1 0 1 OS9 chr12:58109543 3'AG 58109543 Downstream 54bp
chr20 37662905 37662905 1 + C T COAD 37662905 + 37662885 37662925 41 CTACATGAGAGATGTGACTGCCATTGAATCGGCCTGGCTGT CTACATGAGAGATGTGACTGTCATTGAATCGGCCTGGCTGT Direct Loss 1 0.0652547383895402 1 0.0816755592823029 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX35 ENSG00000101452 CDS Human protein_coding chr20:37662905 chr20:37662905 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_923 0 0 1 0 1 DHX35 chr20:37662960 5'GT 37662960 Upstream 56bp
chr20 2840990 2840990 1 + C T COAD 2840990 + 2840970 2841010 41 ATGGGCTTCATGGTGACTTCCGGAGACACTTCAGCATGGGC ATGGGCTTCATGGTGACTTCTGGAGACACTTCAGCATGGGC Direct Loss 1 0.552627671317042 1 0.874943852424622 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2840990 chr20:2840990 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_924 0 0 1 0 1 VPS16 chr20:2841013 5'GT 2841013 Upstream 24bp
chr2 233681615 233681615 1 + C T COAD 233681615 + 233681595 233681635 41 AAGAGAGGCAGAAATGAGGGCAAAACGGGAAGAGGAAGAGC AAGAGAGGCAGAAATGAGGGTAAAACGGGAAGAGGAAGAGC Direct Loss 1 0.270332935727995 1 0.417643517255783 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233681615 chr2:233681615 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_926 0 0 1 0 1 GIGYF2 chr2:233681581 3'AG 233681581 Downstream 35bp
chr20 39795148 39795148 1 + C T COAD 39795148 + 39795128 39795168 41 GAGCCTGACCAGAGCACAGGCTGAGCACATGCTAATGCGCG GAGCCTGACCAGAGCACAGGTTGAGCACATGCTAATGCGCG Direct Loss 1 0.353696063445167 1 0.179817706346512 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39795148 chr20:39795148 nonsynonymous SNV 0.844 5 21 hm5C_associated_SNPs_927 0 0 0 0 2 PLCG1 chr20:39795116 3'AG 39795116 Downstream 33bp
chr20 39795148 39795148 1 + C T COAD 39795148 + 39795128 39795168 41 GAGCCTGACCAGAGCACAGGCTGAGCACATGCTAATGCGCG GAGCCTGACCAGAGCACAGGTTGAGCACATGCTAATGCGCG Direct Loss 1 0.353696063445167 1 0.179817706346512 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39795148 chr20:39795148 nonsynonymous SNV 0.844 5 21 hm5C_associated_SNPs_927 0 0 0 0 2 PLCG1 chr20:39795235 5'GT 39795235 Upstream 88bp
chr9 135942539 135942539 1 + C T COAD 135942539 + 135942519 135942559 41 GGCCCAGTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGC GGCCCAGTGTCTGAAGGTTATTGATCCCCGAGCCCTGACGC Direct Loss 1 0.595918149403575 1 0.0479648411273956 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942539 chr9:135942539 nonsynonymous SNV 0.336 4 21 hm5C_associated_SNPs_928 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 65bp
chr1 212792728 212792728 1 + C T COAD 212792728 + 212792708 212792748 41 GAAGCTGGAAAGTGTGAATGCTGAACTGAAGGCTCAGATTG GAAGCTGGAAAGTGTGAATGTTGAACTGAAGGCTCAGATTG Direct Loss 1 0.85940342344272 1 0.158988267183304 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ATF3 ENSG00000162772 CDS Human protein_coding chr1:212792728 chr1:212792728 nonsynonymous SNV 0.953 1 21 hm5C_associated_SNPs_929 0 0 1 0 1 ATF3 chr1:212792700 3'AG 212792700 Downstream 29bp
chr4 184192371 184192371 1 + C T COAD 184192371 + 184192351 184192391 41 CTGTATTTCAACCAAACCAGCCGTTAGTAGATTCTATAGAC CTGTATTTCAACCAAACCAGTCGTTAGTAGATTCTATAGAC Direct Loss 1 0.0277076053252189 1 0.0834928154945374 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WWC2 ENSG00000151718 CDS Human protein_coding chr4:184192371 chr4:184192371 nonsynonymous SNV 0.021 0 21 hm5C_associated_SNPs_930 0 0 1 0 1 WWC2 chr4:184192394 5'GT 184192394 Upstream 24bp
chr3 52245357 52245357 1 + C T COAD 52245357 + 52245337 52245377 41 ACGAGTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGG ACGAGTTCTCTGATTGACACTGTACGGTCCTATGCTGCTGG Direct Loss 1 0.161561818880442 1 0.496318966150284 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245357 chr3:52245357 synonymous SNV . 0 21 hm5C_associated_SNPs_931 0 0 1 0 1 ALAS1 chr3:52245299 3'AG 52245299 Downstream 59bp
chr2 28550197 28550197 1 + C T DLBC 28550197 + 28550177 28550217 41 GGAGCAAGTCCTGGCCTTTGCAGTTGCAAAAACTGGCTGCA GGAGCAAGTCCTGGCCTTTGTAGTTGCAAAAACTGGCTGCA Direct Loss 1 0.429050789338822 1 0.36060094833374 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BABAM2 ENSG00000158019 CDS Human protein_coding chr2:28550197 chr2:28550197 nonsynonymous SNV 0.267 1 21 hm5C_associated_SNPs_934 0 0 0 0 1 BABAM2 chr2:28550141 3'AG 28550141 Downstream 57bp
chr22 38313800 38313800 1 + C T ESCA 38313800 + 38313780 38313820 41 TGGAACCAGAAGATGTGGCTCAGGTAGGCAGATACCTGGAG TGGAACCAGAAGATGTGGCTTAGGTAGGCAGATACCTGGAG Direct Loss 1 0.582787104434752 1 0.289155900478363 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38313800 chr22:38313800 stopgain 0.850 0 21 hm5C_associated_SNPs_936 0 0 0 0 2 MICALL1 chr22:38313714 3'AG 38313714 Downstream 87bp
chr22 38313800 38313800 1 + C T ESCA 38313800 + 38313780 38313820 41 TGGAACCAGAAGATGTGGCTCAGGTAGGCAGATACCTGGAG TGGAACCAGAAGATGTGGCTTAGGTAGGCAGATACCTGGAG Direct Loss 1 0.582787104434752 1 0.289155900478363 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38313800 chr22:38313800 stopgain 0.850 0 21 hm5C_associated_SNPs_936 0 0 0 0 2 MICALL1 chr22:38313802 5'GT 38313802 Upstream 3bp
chr3 57293965 57293965 1 + C T ESCA 57293965 + 57293945 57293985 41 ATGTTGTTTATGAAACTATGCGCCAAATCTTAGCTGCCCGG ATGTTGTTTATGAAACTATGTGCCAAATCTTAGCTGCCCGG Direct Loss 1 0.765548151806898 1 0.125298380851746 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control APPL1 ENSG00000157500 CDS Human protein_coding chr3:57293965 chr3:57293965 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_937 0 0 1 0 2 APPL1 chr3:57293873 3'AG 57293873 Downstream 93bp
chr3 57293965 57293965 1 + C T ESCA 57293965 + 57293945 57293985 41 ATGTTGTTTATGAAACTATGCGCCAAATCTTAGCTGCCCGG ATGTTGTTTATGAAACTATGTGCCAAATCTTAGCTGCCCGG Direct Loss 1 0.765548151806898 1 0.125298380851746 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control APPL1 ENSG00000157500 CDS Human protein_coding chr3:57293965 chr3:57293965 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_937 0 0 1 0 2 APPL1 chr3:57294047 5'GT 57294047 Upstream 83bp
chr1 46497074 46497074 1 + C T ESCA 46497074 + 46497054 46497094 41 GGCCTACAGCTATGGAGACCCGAGGCCGTGGGACCTCACAG GGCCTACAGCTATGGAGACCTGAGGCCGTGGGACCTCACAG Direct Loss 1 0.690314812675036 1 0.481148302555084 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control MAST2 ENSG00000086015 CDS Human protein_coding chr1:46497074 chr1:46497074 stopgain 0.945 0 21 hm5C_associated_SNPs_938 0 0 1 0 1 MAST2 chr1:46497063 3'AG 46497063 Downstream 12bp
chr16 12662432 12662432 1 + C T ESCA 12662432 + 12662412 12662452 41 TCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGAC TCCCGCTTCCCCAAACTGTCTCGGGGTCAGCCCCGGGAGAC Direct Loss 1 0.368987038583984 1 0.719769716262817 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662432 chr16:12662432 synonymous SNV . 0 21 hm5C_associated_SNPs_939 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 70bp
chrX 70787359 70787359 1 + C T ESCA 70787359 + 70787339 70787379 41 CCCTATTTTAGATTCTGAAGCGTGTTCCCAATAGTGTACTC CCCTATTTTAGATTCTGAAGTGTGTTCCCAATAGTGTACTC Direct Loss 1 0.230814182551906 1 0.0646421611309052 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70787359 chrX:70787359 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_940 0 0 1 0 1 OGT chrX:70787350 3'AG 70787350 Downstream 10bp
chr11 46392886 46392886 1 + C G ESCA 46392886 + 46392866 46392906 41 TTCCAGCAGAAGTTCACCTTCCACAGCAAGGAGATTGTGGC TTCCAGCAGAAGTTCACCTTGCACAGCAAGGAGATTGTGGC Direct Loss 1 0.285238374984155 1 0.240533500909805 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46392886 chr11:46392886 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_941 0 0 1 0 2 DGKZ chr11:46392863 3'AG 46392863 Downstream 24bp
chr11 46392886 46392886 1 + C G ESCA 46392886 + 46392866 46392906 41 TTCCAGCAGAAGTTCACCTTCCACAGCAAGGAGATTGTGGC TTCCAGCAGAAGTTCACCTTGCACAGCAAGGAGATTGTGGC Direct Loss 1 0.285238374984155 1 0.240533500909805 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46392886 chr11:46392886 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_941 0 0 1 0 2 DGKZ chr11:46392934 5'GT 46392934 Upstream 49bp
chr7 142457375 142457375 1 + C G ESCA 142457375 + 142457355 142457395 41 TTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCCTGCCT TTACCTTTGTGGCAGCTGCTGGTGAGTATCATGCCCTGCCT Direct Loss 1 0.823065835063715 1 0.643602132797241 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457375 chr7:142457375 nonsynonymous SNV 0.046 1 21 hm5C_associated_SNPs_942 0 0 0 1 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 1bp
chr9 130236144 130236144 1 + C A ESCA 130236144 + 130236124 130236164 41 ATTCTGGAGCAAGATGGAATCGAGAACTCTCGGGACAGCCC ATTCTGGAGCAAGATGGAATAGAGAACTCTCGGGACAGCCC Direct Loss 1 0.908973425463353 1 0.796690404415131 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRSAM1 ENSG00000148356 CDS Human protein_coding chr9:130236144 chr9:130236144 synonymous SNV . 0 21 hm5C_associated_SNPs_943 0 0 1 0 1 LRSAM1 chr9:130236210 5'GT 130236210 Upstream 67bp
chr3 184102443 184102443 1 + C A ESCA 184102443 + 184102423 184102463 41 AGAGCTTCGGGGGCACGTGGCTGCCCTGCCCTACTGTGGGC AGAGCTTCGGGGGCACGTGGATGCCCTGCCCTACTGTGGGC Direct Loss 1 0.367613405888821 1 0.129048585891724 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHRD ENSG00000090539 CDS Human protein_coding chr3:184102443 chr3:184102443 nonsynonymous SNV 0.985 0 21 hm5C_associated_SNPs_948 0 0 1 0 1 CHRD chr3:184102481 5'GT 184102481 Upstream 39bp
chrX 53223826 53223826 1 - G A ESCA 53223826 - 53223806 53223846 41 GCCCAGTCCACTGGCATCATCGAGCACGGCCTCCTCTACAA GCCCAGTCCACTGGCATCATTGAGCACGGCCTCCTCTACAA Direct Loss 1 0.600187172637872 1 0.892893075942993 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KDM5C ENSG00000126012 CDS Human protein_coding chrX:53223826 chrX:53223826 nonsynonymous SNV 0.260 1 21 hm5C_associated_SNPs_949 0 0 1 0 1 KDM5C chrX:53223920 3'AG 53223920 Downstream 95bp
chr1 155583316 155583316 1 + C G ESCA 155583316 + 155583296 155583336 41 TGTACCACTGGGGAAGAAATCTTGGCTCAGTATTTACAACA TGTACCACTGGGGAAGAAATGTTGGCTCAGTATTTACAACA Direct Loss 1 0.678144792090832 1 0.341114848852158 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155583316 chr1:155583316 nonsynonymous SNV 0.772 0 21 hm5C_associated_SNPs_950 0 0 0 0 2 MSTO1 chr1:155583253 3'AG 155583253 Downstream 64bp
chr1 155583316 155583316 1 + C G ESCA 155583316 + 155583296 155583336 41 TGTACCACTGGGGAAGAAATCTTGGCTCAGTATTTACAACA TGTACCACTGGGGAAGAAATGTTGGCTCAGTATTTACAACA Direct Loss 1 0.678144792090832 1 0.341114848852158 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155583316 chr1:155583316 nonsynonymous SNV 0.772 0 21 hm5C_associated_SNPs_950 0 0 0 0 2 MSTO1 chr1:155583357 5'GT 155583357 Upstream 42bp
chr7 130021558 130021558 1 + C G ESCA 130021558 + 130021538 130021578 41 TCCAGGCGGTCAAGATCTTTCTGGAGTCCCACGGCATCAGC TCCAGGCGGTCAAGATCTTTGTGGAGTCCCACGGCATCAGC Direct Loss 1 0.967995800866634 1 0.955407738685608 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021558 chr7:130021558 nonsynonymous SNV 0.067 4 21 hm5C_associated_SNPs_951 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 88bp
chr7 130021558 130021558 1 + C G ESCA 130021558 + 130021538 130021578 41 TCCAGGCGGTCAAGATCTTTCTGGAGTCCCACGGCATCAGC TCCAGGCGGTCAAGATCTTTGTGGAGTCCCACGGCATCAGC Direct Loss 1 0.967995800866634 1 0.955407738685608 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021558 chr7:130021558 nonsynonymous SNV 0.067 4 21 hm5C_associated_SNPs_951 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 23bp
chr3 41278166 41278166 1 + C T ESCA 41278166 + 41278146 41278186 41 TTCAGTTGAGCTGACCAGCTCTCTCTTCAGAACAGAGCCAA TTCAGTTGAGCTGACCAGCTTTCTCTTCAGAACAGAGCCAA Direct Loss 1 0.374671013973165 1 0.0563907325267792 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41278166 chr3:41278166 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_952 0 0 1 0 2 CTNNB1 chr3:41278079 3'AG 41278079 Downstream 88bp
chr3 41278166 41278166 1 + C T ESCA 41278166 + 41278146 41278186 41 TTCAGTTGAGCTGACCAGCTCTCTCTTCAGAACAGAGCCAA TTCAGTTGAGCTGACCAGCTTTCTCTTCAGAACAGAGCCAA Direct Loss 1 0.374671013973165 1 0.0563907325267792 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41278166 chr3:41278166 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_952 0 0 1 0 2 CTNNB1 chr3:41278200 5'GT 41278200 Upstream 35bp
chr1 22333434 22333434 1 + C G ESCA 22333434 + 22333414 22333454 41 GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA GGAGATGCCGTCCAGCTCGCGTCACTCCCTCCCGCTGGTGA Direct Loss 1 0.217485595925959 1 0.273423552513123 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333434 chr1:22333434 synonymous SNV . 0 21 hm5C_associated_SNPs_953 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 64bp
chr1 22333434 22333434 1 + C G ESCA 22333434 + 22333414 22333454 41 GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA GGAGATGCCGTCCAGCTCGCGTCACTCCCTCCCGCTGGTGA Direct Loss 1 0.217485595925959 1 0.273423552513123 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333434 chr1:22333434 synonymous SNV . 0 21 hm5C_associated_SNPs_953 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 74bp
chr2 74683272 74683272 1 + C G ESCA 74683272 + 74683252 74683292 41 CTCTCCACTTCGGGACCTATCAGGAGGGTTAGGGGGTCAGG CTCTCCACTTCGGGACCTATGAGGAGGGTTAGGGGGTCAGG Direct Loss 1 0.92781947967403 1 0.884620606899261 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control INO80B ENSG00000115274 CDS Human protein_coding chr2:74683272 chr2:74683272 stopgain 0.996 0 21 hm5C_associated_SNPs_954 0 0 1 0 1 INO80B chr2:74683230 3'AG 74683230 Downstream 43bp
chr19 14150321 14150321 1 + C T GBM 14150321 + 14150301 14150341 41 CCCGCCTCTCTCCTCACAGCCGTTCCAACAAAACCCAGACT CCCGCCTCTCTCCTCACAGCTGTTCCAACAAAACCCAGACT Direct Loss 1 0.030445876825592 1 0.285213321447372 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IL27RA ENSG00000104998 CDS Human protein_coding chr19:14150321 chr19:14150321 nonsynonymous SNV 0.033 2 21 hm5C_associated_SNPs_956 0 0 0 0 1 IL27RA chr19:14150320 3'AG 14150320 Downstream 2bp
chr8 126194360 126194360 1 + C A GBM 126194360 + 126194340 126194380 41 CTTAGGTGAAAGAAGAACGTCCAGAAAAAATACCAGATTTA CTTAGGTGAAAGAAGAACGTACAGAAAAAATACCAGATTTA Direct Loss 1 0.331628125999664 1 0.204154312610626 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NSMCE2 ENSG00000156831 CDS Human protein_coding chr8:126194360 chr8:126194360 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_957 0 0 1 0 1 NSMCE2 chr8:126194345 3'AG 126194345 Downstream 16bp
chr17 40651020 40651020 1 + C T GBM 40651020 + 40651000 40651040 41 CTGTTATCCTTGGTATCATCCATATGCTGTTTGGAGTCAGC CTGTTATCCTTGGTATCATCTATATGCTGTTTGGAGTCAGC Direct Loss 1 0.0873704179435016 1 0.25391948223114 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40651020 chr17:40651020 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_958 0 0 1 0 2 ATP6V0A1 chr17:40650942 3'AG 40650942 Downstream 79bp
chr17 40651020 40651020 1 + C T GBM 40651020 + 40651000 40651040 41 CTGTTATCCTTGGTATCATCCATATGCTGTTTGGAGTCAGC CTGTTATCCTTGGTATCATCTATATGCTGTTTGGAGTCAGC Direct Loss 1 0.0873704179435016 1 0.25391948223114 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40651020 chr17:40651020 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_958 0 0 1 0 2 ATP6V0A1 chr17:40651060 5'GT 40651060 Upstream 41bp
chr19 47700626 47700626 1 + C A GBM 47700626 + 47700606 47700646 41 CCTGACCTGCTTCCTGAGGACTTTGTCAGGTTGGTGTCAGT CCTGACCTGCTTCCTGAGGAATTTGTCAGGTTGGTGTCAGT Direct Loss 1 0.0790434272243542 1 0.05692258477211 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SAE1 ENSG00000142230 CDS Human protein_coding chr19:47700626 chr19:47700626 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_959 0 0 1 0 1 SAE1 chr19:47700634 5'GT 47700634 Upstream 9bp
chr17 7476181 7476181 1 + C T GBM 7476181 + 7476161 7476201 41 TGTCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCAA TGTCTGCGAGCCAGGATTCCTGGTAAGAAAGGCATTTGCAA Direct Loss 1 0.702718071731279 1 0.237196028232574 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7476181 chr17:7476181 stopgain 0.996 0 21 hm5C_associated_SNPs_960 0 0 1 0 1 EIF4A1 chr17:7476182 5'GT 7476182 Upstream 2bp
chr6 31604122 31604122 1 + C A GBM 31604122 + 31604102 31604142 41 AGTTGCCGGCTGGAGGAGTTCTCTACCCTCCACCTTCCTTC AGTTGCCGGCTGGAGGAGTTATCTACCCTCCACCTTCCTTC Direct Loss 1 0.711174524512022 1 0.365950584411621 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31604122 chr6:31604122 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_961 0 0 1 0 1 PRRC2A chr6:31604196 5'GT 31604196 Upstream 75bp
chr16 1817164 1817164 1 + C A GBM 1817164 + 1817144 1817184 41 CTCCAGATGGCCAGTGGGATCTGAGCAACTATCACCTAATG CTCCAGATGGCCAGTGGGATATGAGCAACTATCACCTAATG Direct Loss 1 0.519125655754139 1 0.298732221126556 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1817164 chr16:1817164 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_962 0 0 1 0 1 MAPK8IP3 chr16:1817150 3'AG 1817150 Downstream 15bp
chr7 133164812 133164812 1 + C T GBM 133164812 + 133164792 133164832 41 GTTTCTCTGCAGGTTCGAATCGTCCTCCCATGCCATCAGTA GTTTCTCTGCAGGTTCGAATTGTCCTCCCATGCCATCAGTA Direct Loss 1 0.252685370403905 1 0.117782890796661 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133164812 chr7:133164812 nonsynonymous SNV 0.986 1 21 hm5C_associated_SNPs_963 0 0 1 0 2 EXOC4 chr7:133164804 3'AG 133164804 Downstream 9bp
chr7 133164812 133164812 1 + C T GBM 133164812 + 133164792 133164832 41 GTTTCTCTGCAGGTTCGAATCGTCCTCCCATGCCATCAGTA GTTTCTCTGCAGGTTCGAATTGTCCTCCCATGCCATCAGTA Direct Loss 1 0.252685370403905 1 0.117782890796661 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133164812 chr7:133164812 nonsynonymous SNV 0.986 1 21 hm5C_associated_SNPs_963 0 0 1 0 2 EXOC4 chr7:133164892 5'GT 133164892 Upstream 81bp
chrX 154005135 154005135 1 + C T GBM 154005135 + 154005115 154005155 41 AAAAGAGGTAGAATTGGTTTCTGAGTAGTGAAGGCCACTTG AAAAGAGGTAGAATTGGTTTTTGAGTAGTGAAGGCCACTTG Direct Loss 1 0.646503943744519 1 0.416101843118668 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DKC1 ENSG00000130826 CDS Human protein_coding chrX:154005135 chrX:154005135 nonsynonymous SNV 0.444 1 21 hm5C_associated_SNPs_965 0 0 1 0 1 DKC1 chrX:154005074 3'AG 154005074 Downstream 62bp
chr17 64783073 64783073 1 + C A GBM 64783073 + 64783053 64783093 41 AAAATCCTTGTCCAAGGAGGCTGTTTCTGTCTGCAAAGGAG AAAATCCTTGTCCAAGGAGGATGTTTCTGTCTGCAAAGGAG Direct Loss 1 0.0437115910760614 1 0.140262216329575 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64783073 chr17:64783073 nonsynonymous SNV 0.978 4 21 hm5C_associated_SNPs_966 0 0 1 0 2 PRKCA chr17:64782985 3'AG 64782985 Downstream 89bp
chr17 64783073 64783073 1 + C A GBM 64783073 + 64783053 64783093 41 AAAATCCTTGTCCAAGGAGGCTGTTTCTGTCTGCAAAGGAG AAAATCCTTGTCCAAGGAGGATGTTTCTGTCTGCAAAGGAG Direct Loss 1 0.0437115910760614 1 0.140262216329575 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64783073 chr17:64783073 nonsynonymous SNV 0.978 4 21 hm5C_associated_SNPs_966 0 0 1 0 2 PRKCA chr17:64783092 5'GT 64783092 Upstream 20bp
chr1 40922642 40922642 1 + C A GBM 40922642 + 40922622 40922662 41 GTTAACCTTCAAGGACGTATCTGTGGACTTCACTCAGGAGG GTTAACCTTCAAGGACGTATATGTGGACTTCACTCAGGAGG Direct Loss 1 0.667386068672827 1 0.52178829908371 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZFP69B ENSG00000187801 CDS Human protein_coding chr1:40922642 chr1:40922642 nonsynonymous SNV 0.984 1 21 hm5C_associated_SNPs_968 0 0 0 0 1 ZFP69B chr1:40922617 3'AG 40922617 Downstream 26bp
chr1 45270421 45270421 1 + C T GBM 45270421 + 45270401 45270441 41 CTGGGTATCCTGCGGTACTTCGCCTCCTACATGGAGCAGCA CTGGGTATCCTGCGGTACTTTGCCTCCTACATGGAGCAGCA Direct Loss 1 0.678729553347289 1 0.382944077253342 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45270421 chr1:45270421 synonymous SNV . 0 21 hm5C_associated_SNPs_969 0 0 0 0 2 PLK3 chr1:45270322 3'AG 45270322 Downstream 100bp
chr1 45270421 45270421 1 + C T GBM 45270421 + 45270401 45270441 41 CTGGGTATCCTGCGGTACTTCGCCTCCTACATGGAGCAGCA CTGGGTATCCTGCGGTACTTTGCCTCCTACATGGAGCAGCA Direct Loss 1 0.678729553347289 1 0.382944077253342 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45270421 chr1:45270421 synonymous SNV . 0 21 hm5C_associated_SNPs_969 0 0 0 0 2 PLK3 chr1:45270451 5'GT 45270451 Upstream 31bp
chr15 78838067 78838067 1 + C T GBM 78838067 + 78838047 78838087 41 AGTGACCCTAGTGGAAATTACGGGGGATGGAAGGCCACATG AGTGACCCTAGTGGAAATTATGGGGGATGGAAGGCCACATG Direct Loss 1 0.958377252270605 1 0.894859194755554 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMA4 ENSG00000041357 CDS Human protein_coding chr15:78838067 chr15:78838067 synonymous SNV . 0 21 hm5C_associated_SNPs_970 0 0 1 0 2 PSMA4 chr15:78837976 3'AG 78837976 Downstream 92bp
chr15 78838067 78838067 1 + C T GBM 78838067 + 78838047 78838087 41 AGTGACCCTAGTGGAAATTACGGGGGATGGAAGGCCACATG AGTGACCCTAGTGGAAATTATGGGGGATGGAAGGCCACATG Direct Loss 1 0.958377252270605 1 0.894859194755554 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMA4 ENSG00000041357 CDS Human protein_coding chr15:78838067 chr15:78838067 synonymous SNV . 0 21 hm5C_associated_SNPs_970 0 0 1 0 2 PSMA4 chr15:78838106 5'GT 78838106 Upstream 40bp
chr2 153494168 153494168 1 + C T GBM 153494168 + 153494148 153494188 41 TCTTCTTTCCTGTCTTTGTCCGGTTTGTGAAAGCATATAAG TCTTCTTTCCTGTCTTTGTCTGGTTTGTGAAAGCATATAAG Direct Loss 1 0.172223786586351 1 0.171734750270844 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153494168 chr2:153494168 nonsynonymous SNV 0.987 4 21 hm5C_associated_SNPs_971 0 0 0 0 2 FMNL2 chr2:153494087 3'AG 153494087 Downstream 82bp
chr2 153494168 153494168 1 + C T GBM 153494168 + 153494148 153494188 41 TCTTCTTTCCTGTCTTTGTCCGGTTTGTGAAAGCATATAAG TCTTCTTTCCTGTCTTTGTCTGGTTTGTGAAAGCATATAAG Direct Loss 1 0.172223786586351 1 0.171734750270844 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153494168 chr2:153494168 nonsynonymous SNV 0.987 4 21 hm5C_associated_SNPs_971 0 0 0 0 2 FMNL2 chr2:153494188 5'GT 153494188 Upstream 21bp
chr1 12052619 12052619 1 + C G GBM 12052619 + 12052599 12052639 41 TCCCCACCTCCAGACACGTACAGGAATGCAGAACTGGACCC TCCCCACCTCCAGACACGTAGAGGAATGCAGAACTGGACCC Direct Loss 1 0.805769865238703 1 0.859966397285461 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12052619 chr1:12052619 stopgain 0.997 0 21 hm5C_associated_SNPs_972 0 0 1 0 1 MFN2 chr1:12052612 3'AG 12052612 Downstream 8bp
chr12 101711355 101711355 1 + C T GBM 101711355 + 101711335 101711375 41 GAAATCGAAGAGGAACCTGCCGCAGGAGATGATGAAGAGTT GAAATCGAAGAGGAACCTGCTGCAGGAGATGATGAAGAGTT Direct Loss 1 0.420557164865162 1 0.470639228820801 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711355 chr12:101711355 synonymous SNV . 0 21 hm5C_associated_SNPs_973 0 0 1 0 2 UTP20 chr12:101711256 3'AG 101711256 Downstream 100bp
chr12 101711355 101711355 1 + C T GBM 101711355 + 101711335 101711375 41 GAAATCGAAGAGGAACCTGCCGCAGGAGATGATGAAGAGTT GAAATCGAAGAGGAACCTGCTGCAGGAGATGATGAAGAGTT Direct Loss 1 0.420557164865162 1 0.470639228820801 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711355 chr12:101711355 synonymous SNV . 0 21 hm5C_associated_SNPs_973 0 0 1 0 2 UTP20 chr12:101711441 5'GT 101711441 Upstream 87bp
chr5 149755836 149755836 1 + C T GBM 149755836 + 149755816 149755856 41 CCAGCAGAGGATTCTTCAAGCAGTGAGGAATCAGATAGTGA CCAGCAGAGGATTCTTCAAGTAGTGAGGAATCAGATAGTGA Direct Loss 1 0.280440901406096 1 0.195944458246231 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149755836 chr5:149755836 synonymous SNV . 0 21 hm5C_associated_SNPs_974 0 0 1 0 1 TCOF1 chr5:149755893 5'GT 149755893 Upstream 58bp
chr19 55817715 55817715 1 + C A GBM 55817715 + 55817695 55817735 41 GTCTTCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTC GTCTTCCAAAAGCCCGTCCGATTCCAGGTGGACATCAGCTC Direct Loss 1 0.122866399454878 1 0.198597103357315 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55817715 chr19:55817715 synonymous SNV . 0 21 hm5C_associated_SNPs_975 0 0 1 0 1 BRSK1 chr19:55817620 3'AG 55817620 Downstream 96bp
chr17 73997536 73997536 1 + C T GBM 73997536 + 73997516 73997556 41 TTCCAGAAGGTAGAGAAGATCGGAGAGGGCACCTATGGGGT TTCCAGAAGGTAGAGAAGATTGGAGAGGGCACCTATGGGGT Direct Loss 1 0.856097514320471 1 0.85660308599472 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control CDK3 ENSG00000250506 CDS Human protein_coding chr17:73997536 chr17:73997536 synonymous SNV . 0 21 hm5C_associated_SNPs_976 0 0 0 0 2 TEN1-CDK3 chr17:73997493 3'AG 73997493 Downstream 44bp
chr17 73997536 73997536 1 + C T GBM 73997536 + 73997516 73997556 41 TTCCAGAAGGTAGAGAAGATCGGAGAGGGCACCTATGGGGT TTCCAGAAGGTAGAGAAGATTGGAGAGGGCACCTATGGGGT Direct Loss 1 0.856097514320471 1 0.85660308599472 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control CDK3 ENSG00000250506 CDS Human protein_coding chr17:73997536 chr17:73997536 synonymous SNV . 0 21 hm5C_associated_SNPs_976 0 0 0 0 2 CDK3 chr17:73997622 5'GT 73997622 Upstream 87bp
chr3 9489393 9489393 1 + C T GBM 9489393 + 9489373 9489413 41 ATTGCTGCAGAAAAACTAGTCCCCAAGCCACCTCCAGCAAA ATTGCTGCAGAAAAACTAGTTCCCAAGCCACCTCCAGCAAA Direct Loss 1 0.499940041869554 1 0.23016494512558 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SETD5 ENSG00000168137 CDS Human protein_coding chr3:9489393 chr3:9489393 synonymous SNV . 0 21 hm5C_associated_SNPs_977 0 0 1 0 1 SETD5 chr3:9489370 3'AG 9489370 Downstream 24bp
chr3 148562321 148562321 1 + C A GBM 148562321 + 148562301 148562341 41 GAGCTTCTCGACAAGTTAGACTTTTATGTCCTGCCTGTGCT GAGCTTCTCGACAAGTTAGAATTTTATGTCCTGCCTGTGCT Direct Loss 1 0.101498824156412 1 0.0414697527885437 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562321 chr3:148562321 nonsynonymous SNV 0.983 1 21 hm5C_associated_SNPs_978 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 57bp
chr3 148562321 148562321 1 + C A GBM 148562321 + 148562301 148562341 41 GAGCTTCTCGACAAGTTAGACTTTTATGTCCTGCCTGTGCT GAGCTTCTCGACAAGTTAGAATTTTATGTCCTGCCTGTGCT Direct Loss 1 0.101498824156412 1 0.0414697527885437 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562321 chr3:148562321 nonsynonymous SNV 0.983 1 21 hm5C_associated_SNPs_978 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 55bp
chr1 28600565 28600565 1 + C T GBM 28600565 + 28600545 28600585 41 CCTCAGCTGACATCCTGGAGCCCTCTCCACACCCAGACATG CCTCAGCTGACATCCTGGAGTCCTCTCCACACCCAGACATG Direct Loss 1 0.025506134434734 1 0.0483695268630981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SESN2 ENSG00000130766 CDS Human protein_coding chr1:28600565 chr1:28600565 nonsynonymous SNV 0.975 0 21 hm5C_associated_SNPs_979 0 0 1 0 1 SESN2 chr1:28600551 3'AG 28600551 Downstream 15bp
chr1 22329556 22329556 1 + C T GBM 22329556 + 22329536 22329576 41 CGTTGTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCT CGTTGTCCATGGTGAGGATGTGGTCCCCTACAGCTGGCCCT Direct Loss 1 0.208638064051872 1 0.152287811040878 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329556 chr1:22329556 nonsynonymous SNV 0.868 1 21 hm5C_associated_SNPs_980 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 61bp
chr1 22329556 22329556 1 + C T GBM 22329556 + 22329536 22329576 41 CGTTGTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCT CGTTGTCCATGGTGAGGATGTGGTCCCCTACAGCTGGCCCT Direct Loss 1 0.208638064051872 1 0.152287811040878 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329556 chr1:22329556 nonsynonymous SNV 0.868 1 21 hm5C_associated_SNPs_980 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 26bp
chr20 55968365 55968365 1 + C G GBM 55968365 + 55968345 55968385 41 TGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACTT TGGGGTGCAGCAGCTGCACCGCACCTTGATCCAGCGGACTT Direct Loss 1 0.0757625689027981 1 0.0707361102104187 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968365 chr20:55968365 nonsynonymous SNV 0.982 4 21 hm5C_associated_SNPs_981 0 0 1 0 2 RBM38 chr20:55968335 3'AG 55968335 Downstream 31bp
chr20 55968365 55968365 1 + C G GBM 55968365 + 55968345 55968385 41 TGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACTT TGGGGTGCAGCAGCTGCACCGCACCTTGATCCAGCGGACTT Direct Loss 1 0.0757625689027981 1 0.0707361102104187 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968365 chr20:55968365 nonsynonymous SNV 0.982 4 21 hm5C_associated_SNPs_981 0 0 1 0 2 RBM38 chr20:55968389 5'GT 55968389 Upstream 25bp
chr5 17275370 17275370 1 + C T GBM 17275370 + 17275350 17275390 41 AAGAAGGGCTACAATGTGAACGACGAGAAAGCCAAGGAGAA AAGAAGGGCTACAATGTGAATGACGAGAAAGCCAAGGAGAA Direct Loss 1 0.555215822582465 1 0.28209576010704 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275370 chr5:17275370 synonymous SNV . 0 21 hm5C_associated_SNPs_982 0 0 1 0 1 BASP1 chr5:17275317 3'AG 17275317 Downstream 54bp
chr14 105936268 105936268 1 + C T GBM 105936268 + 105936248 105936288 41 CCCTGCCCCCAGTCAAGCGGCGGCGGATGAACTGGATCGAC CCCTGCCCCCAGTCAAGCGGTGGCGGATGAACTGGATCGAC Direct Loss 1 0.696821611525895 1 0.430686682462692 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936268 chr14:105936268 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_983 0 0 1 0 2 MTA1 chr14:105936178 3'AG 105936178 Downstream 91bp
chr14 105936268 105936268 1 + C T GBM 105936268 + 105936248 105936288 41 CCCTGCCCCCAGTCAAGCGGCGGCGGATGAACTGGATCGAC CCCTGCCCCCAGTCAAGCGGTGGCGGATGAACTGGATCGAC Direct Loss 1 0.696821611525895 1 0.430686682462692 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936268 chr14:105936268 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_983 0 0 1 0 2 MTA1 chr14:105936329 5'GT 105936329 Upstream 62bp
chr7 142460295 142460295 1 + C T GBM 142460295 + 142460275 142460315 41 CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGC CTCACAGCCGACTACCCAGATGAGCTGCAGTGCCTGGATGC Direct Loss 1 0.389851456385807 1 0.178473651409149 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460295 chr7:142460295 synonymous SNV . 0 21 hm5C_associated_SNPs_984 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 14bp
chr3 39152446 39152446 1 + C T GBM 39152446 + 39152426 39152466 41 TTTTCCTCTGGCTCATAGGCCGCCATGACAAGGCCAAAGAG TTTTCCTCTGGCTCATAGGCTGCCATGACAAGGCCAAAGAG Direct Loss 1 0.711672693207948 1 0.312874585390091 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTC21A ENSG00000168026 CDS Human protein_coding chr3:39152446 chr3:39152446 nonsynonymous SNV 0.029 1 21 hm5C_associated_SNPs_985 0 0 0 0 1 TTC21A chr3:39152508 5'GT 39152508 Upstream 63bp
chr7 101813790 101813790 1 + C G HNSC 101813790 + 101813770 101813810 41 GCTCTCATCGGCCAATCACTCCCTCCAGCTGGCCTCACAGA GCTCTCATCGGCCAATCACTGCCTCCAGCTGGCCTCACAGA Direct Loss 1 0.055697478543347 1 0.464294135570526 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101813790 chr7:101813790 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_987 0 0 1 0 2 CUX1 chr7:101813726 3'AG 101813726 Downstream 65bp
chr7 101813790 101813790 1 + C G HNSC 101813790 + 101813770 101813810 41 GCTCTCATCGGCCAATCACTCCCTCCAGCTGGCCTCACAGA GCTCTCATCGGCCAATCACTGCCTCCAGCTGGCCTCACAGA Direct Loss 1 0.055697478543347 1 0.464294135570526 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101813790 chr7:101813790 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_987 0 0 1 0 2 CUX1 chr7:101813830 5'GT 101813830 Upstream 41bp
chr1 198233296 198233296 1 + C T HNSC 198233296 + 198233276 198233316 41 ATAAAATATTATGCATCATTCATTGAAGATAATGAACTAAA ATAAAATATTATGCATCATTTATTGAAGATAATGAACTAAA Direct Loss 1 0.12451885002953 1 0.391125023365021 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233296 chr1:198233296 synonymous SNV . 0 21 hm5C_associated_SNPs_988 0 0 1 0 2 NEK7 chr1:198233255 3'AG 198233255 Downstream 42bp
chr1 198233296 198233296 1 + C T HNSC 198233296 + 198233276 198233316 41 ATAAAATATTATGCATCATTCATTGAAGATAATGAACTAAA ATAAAATATTATGCATCATTTATTGAAGATAATGAACTAAA Direct Loss 1 0.12451885002953 1 0.391125023365021 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233296 chr1:198233296 synonymous SNV . 0 21 hm5C_associated_SNPs_988 0 0 1 0 2 NEK7 chr1:198233365 5'GT 198233365 Upstream 70bp
chr5 56526784 56526784 1 + C T HNSC 56526784 + 56526764 56526804 41 GCTTTGATTCTGCTATTGGGCGTCCTAATGGAGGTAAAATT GCTTTGATTCTGCTATTGGGTGTCCTAATGGAGGTAAAATT Direct Loss 1 0.20648396539873 1 0.143549859523773 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56526784 chr5:56526784 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_989 0 0 1 1 1 GPBP1 chr5:56526796 5'GT 56526796 Upstream 13bp
chr19 30502098 30502098 1 + C G HNSC 30502098 + 30502078 30502118 41 CAGCACTGGCAGTGGCCACTCTGCCCAGGAGCTGCCGACCA CAGCACTGGCAGTGGCCACTGTGCCCAGGAGCTGCCGACCA Direct Loss 1 0.803954198076844 1 0.176653861999512 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control URI1 ENSG00000105176 CDS Human protein_coding chr19:30502098 chr19:30502098 nonsynonymous SNV 0.193 1 21 hm5C_associated_SNPs_990 0 0 1 0 2 URI1 chr19:30502001 3'AG 30502001 Downstream 98bp
chr19 30502098 30502098 1 + C G HNSC 30502098 + 30502078 30502118 41 CAGCACTGGCAGTGGCCACTCTGCCCAGGAGCTGCCGACCA CAGCACTGGCAGTGGCCACTGTGCCCAGGAGCTGCCGACCA Direct Loss 1 0.803954198076844 1 0.176653861999512 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control URI1 ENSG00000105176 CDS Human protein_coding chr19:30502098 chr19:30502098 nonsynonymous SNV 0.193 1 21 hm5C_associated_SNPs_990 0 0 1 0 2 URI1 chr19:30502143 5'GT 30502143 Upstream 46bp
chr7 128407640 128407640 1 + C T HNSC 128407640 + 128407620 128407660 41 GAAGAGACCAAAGACTGGATCCTTCCCTCAGACTATGATCA GAAGAGACCAAAGACTGGATTCTTCCCTCAGACTATGATCA Direct Loss 1 0.0224579756124075 1 0.052566796541214 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CALU ENSG00000128595 CDS Human protein_coding chr7:128407640 chr7:128407640 synonymous SNV . 0 21 hm5C_associated_SNPs_993 0 0 1 0 1 CALU chr7:128407709 5'GT 128407709 Upstream 70bp
chr11 122817446 122817446 1 + C T HNSC 122817446 + 122817426 122817466 41 AGCCGTAGCAATTCTGAAGGCTATCTGTTTCAACTGGAAAA AGCCGTAGCAATTCTGAAGGTTATCTGTTTCAACTGGAAAA Direct Loss 1 0.104097247963331 1 0.0774632096290588 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122817446 chr11:122817446 synonymous SNV . 0 21 hm5C_associated_SNPs_994 0 0 0 0 1 C11orf63 chr11:122817500 5'GT 122817500 Upstream 55bp
chr1 117631430 117631430 1 + C G HNSC 117631430 + 117631410 117631450 41 GTGATTCTTCCAGGGCACCTCAACACCTTTGCTTCGAATAG GTGATTCTTCCAGGGCACCTGAACACCTTTGCTTCGAATAG Direct Loss 1 0.562637347727036 1 0.154687702655792 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117631430 chr1:117631430 stopgain 0.337 0 21 hm5C_associated_SNPs_995 0 0 1 0 1 TTF2 chr1:117631423 3'AG 117631423 Downstream 8bp
chr1 89298809 89298809 1 + C T HNSC 89298809 + 89298789 89298829 41 TGGGGCTAGCGAGAAAGATGCAGAGGATGTAAAAAAGCACC TGGGGCTAGCGAGAAAGATGTAGAGGATGTAAAAAAGCACC Direct Loss 1 0.559668366691935 1 0.827740252017975 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKN2 ENSG00000065243 CDS Human protein_coding chr1:89298809 chr1:89298809 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_996 0 0 1 0 2 PKN2 chr1:89298760 3'AG 89298760 Downstream 50bp
chr1 89298809 89298809 1 + C T HNSC 89298809 + 89298789 89298829 41 TGGGGCTAGCGAGAAAGATGCAGAGGATGTAAAAAAGCACC TGGGGCTAGCGAGAAAGATGTAGAGGATGTAAAAAAGCACC Direct Loss 1 0.559668366691935 1 0.827740252017975 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKN2 ENSG00000065243 CDS Human protein_coding chr1:89298809 chr1:89298809 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_996 0 0 1 0 2 PKN2 chr1:89298840 5'GT 89298840 Upstream 32bp
chr16 2569563 2569563 1 + C T HNSC 2569563 + 2569543 2569583 41 AGCTTCCTCCAGCTGGGCGCCGGCCTGAGCGTGGGCCTGAG AGCTTCCTCCAGCTGGGCGCTGGCCTGAGCGTGGGCCTGAG Direct Loss 1 0.45255865024903 1 0.647213757038116 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V0C ENSG00000185883 CDS Human protein_coding chr16:2569563 chr16:2569563 synonymous SNV . 0 21 hm5C_associated_SNPs_997 0 0 1 0 1 ATP6V0C chr16:2569542 3'AG 2569542 Downstream 22bp
chr8 98657027 98657027 1 + C T HNSC 98657027 + 98657007 98657047 41 GGCGGCGGCCGTGCCGGCCGCGGCCCCCGACGACCTGGCCT GGCGGCGGCCGTGCCGGCCGTGGCCCCCGACGACCTGGCCT Direct Loss 1 0.777289126534301 1 0.53326153755188 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98657027 chr8:98657027 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_998 0 0 1 0 1 MTDH chr8:98657115 5'GT 98657115 Upstream 89bp
chr19 50905073 50905073 1 + C T HNSC 50905073 + 50905053 50905093 41 CTGGGGGGCCCCCACCATCCCGCGGCTCCGTGCCTGTGCTC CTGGGGGGCCCCCACCATCCTGCGGCTCCGTGCCTGTGCTC Direct Loss 1 0.89185475849083 1 0.697320520877838 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905073 chr19:50905073 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_999 2 0 1 0 1 POLD1 chr19:50905035 3'AG 50905035 Downstream 39bp
chr12 57560805 57560805 1 + C G HNSC 57560805 + 57560785 57560825 41 TGGATGACGACTGTGGGGACCGCTCTGATGAGTCTGCTTCG TGGATGACGACTGTGGGGACGGCTCTGATGAGTCTGCTTCG Direct Loss 1 0.0569378269917331 1 0.419802010059357 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57560805 chr12:57560805 nonsynonymous SNV 0.994 4 21 hm5C_associated_SNPs_1002 0 0 1 0 2 LRP1 chr12:57560713 3'AG 57560713 Downstream 93bp
chr12 57560805 57560805 1 + C G HNSC 57560805 + 57560785 57560825 41 TGGATGACGACTGTGGGGACCGCTCTGATGAGTCTGCTTCG TGGATGACGACTGTGGGGACGGCTCTGATGAGTCTGCTTCG Direct Loss 1 0.0569378269917331 1 0.419802010059357 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57560805 chr12:57560805 nonsynonymous SNV 0.994 4 21 hm5C_associated_SNPs_1002 0 0 1 0 2 LRP1 chr12:57560829 5'GT 57560829 Upstream 25bp
chrX 153008774 153008774 1 + C T HNSC 153008774 + 153008754 153008794 41 GACGCGGGCATTGCCCTGCTCTCCATCACCCACCGGCCCTC GACGCGGGCATTGCCCTGCTTTCCATCACCCACCGGCCCTC Direct Loss 1 0.783946152816668 1 0.475127518177032 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153008774 chrX:153008774 synonymous SNV . 0 21 hm5C_associated_SNPs_1003 0 0 1 0 2 ABCD1 chrX:153008675 3'AG 153008675 Downstream 100bp
chrX 153008774 153008774 1 + C T HNSC 153008774 + 153008754 153008794 41 GACGCGGGCATTGCCCTGCTCTCCATCACCCACCGGCCCTC GACGCGGGCATTGCCCTGCTTTCCATCACCCACCGGCCCTC Direct Loss 1 0.783946152816668 1 0.475127518177032 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153008774 chrX:153008774 synonymous SNV . 0 21 hm5C_associated_SNPs_1003 0 0 1 0 2 ABCD1 chrX:153008800 5'GT 153008800 Upstream 27bp
chr6 33656530 33656530 1 + C G HNSC 33656530 + 33656510 33656550 41 AACATCATCATTGCCTTCTTCTACCCTTACATGGAGGGCGC AACATCATCATTGCCTTCTTGTACCCTTACATGGAGGGCGC Direct Loss 1 0.126340367113162 1 0.187187641859055 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33656530 chr6:33656530 nonsynonymous SNV 0.998 5 21 hm5C_associated_SNPs_1006 0 0 1 0 2 ITPR3 chr6:33656433 3'AG 33656433 Downstream 98bp
chr6 33656530 33656530 1 + C G HNSC 33656530 + 33656510 33656550 41 AACATCATCATTGCCTTCTTCTACCCTTACATGGAGGGCGC AACATCATCATTGCCTTCTTGTACCCTTACATGGAGGGCGC Direct Loss 1 0.126340367113162 1 0.187187641859055 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33656530 chr6:33656530 nonsynonymous SNV 0.998 5 21 hm5C_associated_SNPs_1006 0 0 1 0 2 ITPR3 chr6:33656558 5'GT 33656558 Upstream 29bp
chr1 22332233 22332233 1 + C G HNSC 22332233 + 22332213 22332253 41 CCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGT CCCGAGCAGGTGATCCCCATGAACTCTGAGGAGCTGTTTGT Direct Loss 1 0.456596805234189 1 0.383203208446503 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332233 chr1:22332233 nonsynonymous SNV 0.911 4 21 hm5C_associated_SNPs_1007 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 79bp
chr1 22332233 22332233 1 + C G HNSC 22332233 + 22332213 22332253 41 CCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGT CCCGAGCAGGTGATCCCCATGAACTCTGAGGAGCTGTTTGT Direct Loss 1 0.456596805234189 1 0.383203208446503 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332233 chr1:22332233 nonsynonymous SNV 0.911 4 21 hm5C_associated_SNPs_1007 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 57bp
chr22 32498104 32498104 1 + C A HNSC 32498104 + 32498084 32498124 41 GGGAGCTGCATGGAGCCCAGCAACTGTCCCACGATTATCTG GGGAGCTGCATGGAGCCCAGAAACTGTCCCACGATTATCTG Direct Loss 1 0.317396157659919 1 0.295548468828201 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32498104 chr22:32498104 nonsynonymous SNV 0.937 2 21 hm5C_associated_SNPs_1008 0 0 0 0 1 SLC5A1 chr22:32498009 3'AG 32498009 Downstream 96bp
chr6 149691182 149691182 1 + C T HNSC 149691182 + 149691162 149691202 41 TTCAGGTTTTACATGACCTGCGACAAAAATTCCCTGAAGTA TTCAGGTTTTACATGACCTGTGACAAAAATTCCCTGAAGTA Direct Loss 1 0.514724382524313 1 0.1583012342453 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAB2 ENSG00000055208 CDS Human protein_coding chr6:149691182 chr6:149691182 stopgain 1.000 1 21 hm5C_associated_SNPs_1009 0 0 1 0 1 TAB2 chr6:149691235 5'GT 149691235 Upstream 54bp
chr16 3712055 3712055 1 - G A HNSC 3712055 - 3712035 3712075 41 CCCGCCACTTCCTGCGCATGCAGCAGCTGGCCAAGACCCAG CCCGCCACTTCCTGCGCATGTAGCAGCTGGCCAAGACCCAG Direct Loss 1 0.922136445066968 1 0.311093300580978 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712055 chr16:3712055 stopgain 1.000 1 21 hm5C_associated_SNPs_1010 0 0 1 0 2 TRAP1 chr16:3711988 5'GT 3711988 Upstream 68bp
chr16 3712055 3712055 1 - G A HNSC 3712055 - 3712035 3712075 41 CCCGCCACTTCCTGCGCATGCAGCAGCTGGCCAAGACCCAG CCCGCCACTTCCTGCGCATGTAGCAGCTGGCCAAGACCCAG Direct Loss 1 0.922136445066968 1 0.311093300580978 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712055 chr16:3712055 stopgain 1.000 1 21 hm5C_associated_SNPs_1010 0 0 1 0 2 TRAP1 chr16:3712133 3'AG 3712133 Downstream 79bp
chr7 92987685 92987685 1 + C G HNSC 92987685 + 92987665 92987705 41 GTTTGCCTGGGATCCCATATCAATAAGAAAGCAAGACAAAA GTTTGCCTGGGATCCCATATGAATAAGAAAGCAAGACAAAA Direct Loss 1 0.54557245271098 1 0.387714862823486 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS50 ENSG00000004766 CDS Human protein_coding chr7:92987685 chr7:92987685 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1011 0 0 0 1 1 VPS50 chr7:92987629 3'AG 92987629 Downstream 57bp
chr11 58919321 58919321 1 + C T HNSC 58919321 + 58919301 58919341 41 AATACCCAGGCTCAAAGATTCCATTCACCTAAGAAAAATCC AATACCCAGGCTCAAAGATTTCATTCACCTAAGAAAAATCC Direct Loss 1 0.060016455120543 1 0.0241883397102356 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM111A ENSG00000166801 CDS Human protein_coding chr11:58919321 chr11:58919321 synonymous SNV . 0 21 hm5C_associated_SNPs_1013 0 0 0 0 1 FAM111A chr11:58919223 3'AG 58919223 Downstream 99bp
chrX 70776893 70776893 1 + C G HNSC 70776893 + 70776873 70776913 41 GAGCCTTGCAGTGTTATACGCGTGCCATCCAAATTAATCCT GAGCCTTGCAGTGTTATACGGGTGCCATCCAAATTAATCCT Direct Loss 1 0.220598209471772 1 0.179496794939041 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70776893 chrX:70776893 nonsynonymous SNV 0.993 4 21 hm5C_associated_SNPs_1015 0 0 1 0 2 OGT chrX:70776802 3'AG 70776802 Downstream 92bp
chrX 70776893 70776893 1 + C G HNSC 70776893 + 70776873 70776913 41 GAGCCTTGCAGTGTTATACGCGTGCCATCCAAATTAATCCT GAGCCTTGCAGTGTTATACGGGTGCCATCCAAATTAATCCT Direct Loss 1 0.220598209471772 1 0.179496794939041 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70776893 chrX:70776893 nonsynonymous SNV 0.993 4 21 hm5C_associated_SNPs_1015 0 0 1 0 2 OGT chrX:70776955 5'GT 70776955 Upstream 63bp
chr1 200869306 200869306 1 + C T HNSC 200869306 + 200869286 200869326 41 CCCAAGGTTCGCCGCAGGATCGGAGCGGCTTACAAACTGGA CCCAAGGTTCGCCGCAGGATTGGAGCGGCTTACAAACTGGA Direct Loss 1 0.617138859043061 1 0.54877758026123 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200869306 chr1:200869306 synonymous SNV . 0 21 hm5C_associated_SNPs_1016 0 0 0 0 2 C1orf106 chr1:200869232 3'AG 200869232 Downstream 75bp
chr1 200869306 200869306 1 + C T HNSC 200869306 + 200869286 200869326 41 CCCAAGGTTCGCCGCAGGATCGGAGCGGCTTACAAACTGGA CCCAAGGTTCGCCGCAGGATTGGAGCGGCTTACAAACTGGA Direct Loss 1 0.617138859043061 1 0.54877758026123 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200869306 chr1:200869306 synonymous SNV . 0 21 hm5C_associated_SNPs_1016 0 0 0 0 2 C1orf106 chr1:200869348 5'GT 200869348 Upstream 43bp
chr11 67047163 67047163 1 + C A HNSC 67047163 + 67047143 67047183 41 AGAAGCAGGTGCCTCCGGATCTCTTCCAGGTGTGTGCCTCC AGAAGCAGGTGCCTCCGGATATCTTCCAGGTGTGTGCCTCC Direct Loss 1 0.17467016783573 1 0.155065417289734 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67047163 chr11:67047163 nonsynonymous SNV 0.972 1 21 hm5C_associated_SNPs_1021 0 0 1 0 2 GRK2 chr11:67047097 3'AG 67047097 Downstream 67bp
chr11 67047163 67047163 1 + C A HNSC 67047163 + 67047143 67047183 41 AGAAGCAGGTGCCTCCGGATCTCTTCCAGGTGTGTGCCTCC AGAAGCAGGTGCCTCCGGATATCTTCCAGGTGTGTGCCTCC Direct Loss 1 0.17467016783573 1 0.155065417289734 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67047163 chr11:67047163 nonsynonymous SNV 0.972 1 21 hm5C_associated_SNPs_1021 0 0 1 0 2 GRK2 chr11:67047171 5'GT 67047171 Upstream 9bp
chr7 142458409 142458409 1 + C T HNSC 142458409 + 142458389 142458429 41 TCCCATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATG TCCCATCTCCACTCCAGTTGTTGCCCCCTTTGATGATGATG Direct Loss 1 0.0620697870365835 1 0.0767718255519867 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458409 chr7:142458409 nonsynonymous SNV 0.112 3 21 hm5C_associated_SNPs_1022 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 4bp
chr17 59482066 59482066 1 + C T HNSC 59482066 + 59482046 59482086 41 TCGTCGTGCGACCCTCCCCCCGCGCGGGAACCACCCACCTC TCGTCGTGCGACCCTCCCCCTGCGCGGGAACCACCCACCTC Direct Loss 1 0.706336590205823 1 0.325370371341705 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBX2 ENSG00000121068 CDS Human protein_coding chr17:59482066 chr17:59482066 synonymous SNV . 0 21 hm5C_associated_SNPs_1023 0 0 0 0 2 TBX2 chr17:59481967 3'AG 59481967 Downstream 100bp
chr17 59482066 59482066 1 + C T HNSC 59482066 + 59482046 59482086 41 TCGTCGTGCGACCCTCCCCCCGCGCGGGAACCACCCACCTC TCGTCGTGCGACCCTCCCCCTGCGCGGGAACCACCCACCTC Direct Loss 1 0.706336590205823 1 0.325370371341705 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBX2 ENSG00000121068 CDS Human protein_coding chr17:59482066 chr17:59482066 synonymous SNV . 0 21 hm5C_associated_SNPs_1023 0 0 0 0 2 TBX2 chr17:59482130 5'GT 59482130 Upstream 65bp
chr4 186231908 186231908 1 + C A HNSC 186231908 + 186231888 186231928 41 GAATCCGAATCCTGGGAGGCCCTGCCTATGACCAGCAAGAG GAATCCGAATCCTGGGAGGCACTGCCTATGACCAGCAAGAG Direct Loss 1 0.084410587124423 1 0.381487369537354 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX25 ENSG00000109762 CDS Human protein_coding chr4:186231908 chr4:186231908 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1025 0 0 1 0 1 SNX25 chr4:186231970 5'GT 186231970 Upstream 63bp
chr1 22329569 22329569 1 + C T HNSC 22329569 + 22329549 22329589 41 GAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGC GAGGATGCGGTCCCCTACAGTTGGCCCTGGCAGGTAAGAGC Direct Loss 1 0.341752461520798 1 0.517518401145935 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329569 chr1:22329569 synonymous SNV . 0 21 hm5C_associated_SNPs_1026 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 74bp
chr1 22329569 22329569 1 + C T HNSC 22329569 + 22329549 22329589 41 GAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGC GAGGATGCGGTCCCCTACAGTTGGCCCTGGCAGGTAAGAGC Direct Loss 1 0.341752461520798 1 0.517518401145935 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329569 chr1:22329569 synonymous SNV . 0 21 hm5C_associated_SNPs_1026 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 13bp
chr7 100478967 100478967 1 + C T HNSC 100478967 + 100478947 100478987 41 ATCGGGACTATGACCGGAATCGGCGAGAGCGCTTCTCGCCA ATCGGGACTATGACCGGAATTGGCGAGAGCGCTTCTCGCCA Direct Loss 1 0.879302200527488 1 0.753186583518982 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100478967 chr7:100478967 nonsynonymous SNV 0.887 3 21 hm5C_associated_SNPs_1027 0 0 1 0 2 SRRT chr7:100478906 3'AG 100478906 Downstream 62bp
chr7 100478967 100478967 1 + C T HNSC 100478967 + 100478947 100478987 41 ATCGGGACTATGACCGGAATCGGCGAGAGCGCTTCTCGCCA ATCGGGACTATGACCGGAATTGGCGAGAGCGCTTCTCGCCA Direct Loss 1 0.879302200527488 1 0.753186583518982 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100478967 chr7:100478967 nonsynonymous SNV 0.887 3 21 hm5C_associated_SNPs_1027 0 0 1 0 2 SRRT chr7:100479034 5'GT 100479034 Upstream 68bp
chr1 22332274 22332274 1 + C T HNSC 22332274 + 22332254 22332294 41 GCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGGGTGAG GCATCCACTCTGGAACCGCTTGTGTGTGGCCTGTGGGTGAG Direct Loss 1 0.667315113483855 1 0.0715108513832092 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332274 chr1:22332274 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_1029 0 0 0 0 1 CELA3A chr1:22332289 5'GT 22332289 Upstream 16bp
chr16 68109341 68109341 1 + C T HNSC 68109341 + 68109321 68109361 41 CAGGCTCTCAGCCAAGACTTCAGAGCAGACAGGGGAGCCAG CAGGCTCTCAGCCAAGACTTTAGAGCAGACAGGGGAGCCAG Direct Loss 1 0.6477218716267 1 0.398518443107605 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68109341 chr16:68109341 nonsynonymous SNV 0.057 0 21 hm5C_associated_SNPs_1030 0 0 0 0 2 DUS2 chr16:68109258 3'AG 68109258 Downstream 84bp
chr16 68109341 68109341 1 + C T HNSC 68109341 + 68109321 68109361 41 CAGGCTCTCAGCCAAGACTTCAGAGCAGACAGGGGAGCCAG CAGGCTCTCAGCCAAGACTTTAGAGCAGACAGGGGAGCCAG Direct Loss 1 0.6477218716267 1 0.398518443107605 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68109341 chr16:68109341 nonsynonymous SNV 0.057 0 21 hm5C_associated_SNPs_1030 0 0 0 0 2 DUS2 chr16:68109407 5'GT 68109407 Upstream 67bp
chr9 139734271 139734271 1 + C T HNSC 139734271 + 139734251 139734291 41 AAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGAGGAGGC AAGAATGACTCGGACCTCTTTGGGCTGGGGCTGGAGGAGGC Direct Loss 1 0.697259318793615 1 0.904609203338623 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734271 chr9:139734271 synonymous SNV . 0 21 hm5C_associated_SNPs_1031 0 0 1 0 1 RABL6 chr9:139734317 5'GT 139734317 Upstream 47bp
chr10 79797023 79797023 1 + C T HNSC 79797023 + 79797003 79797043 41 AAGAACAGAATGAAGAAAGTCAGGGGGACTGCAAAGGCCAA AAGAACAGAATGAAGAAAGTTAGGGGGACTGCAAAGGCCAA Direct Loss 1 0.823175203135907 1 0.802690863609314 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797023 chr10:79797023 synonymous SNV . 0 21 hm5C_associated_SNPs_1032 0 0 1 0 2 RPS24 chr10:79796952 3'AG 79796952 Downstream 72bp
chr10 79797023 79797023 1 + C T HNSC 79797023 + 79797003 79797043 41 AAGAACAGAATGAAGAAAGTCAGGGGGACTGCAAAGGCCAA AAGAACAGAATGAAGAAAGTTAGGGGGACTGCAAAGGCCAA Direct Loss 1 0.823175203135907 1 0.802690863609314 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797023 chr10:79797023 synonymous SNV . 0 21 hm5C_associated_SNPs_1032 0 0 1 0 2 RPS24 chr10:79797062 5'GT 79797062 Upstream 40bp
chr2 173429352 173429352 1 + C G HNSC 173429352 + 173429332 173429372 41 CTGTCACCAGCCAGAATGTTCAGTACTTTTTGGATCGATTC CTGTCACCAGCCAGAATGTTGAGTACTTTTTGGATCGATTC Direct Loss 1 0.483048890389685 1 0.0929596424102783 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PDK1 ENSG00000152256 CDS Human protein_coding chr2:173429352 chr2:173429352 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1035 0 0 0 1 1 PDK1 chr2:173429415 5'GT 173429415 Upstream 64bp
chr3 49011181 49011181 1 + C T HNSC 49011181 + 49011161 49011201 41 CCACAGACTGTGCCACAATCCGGAAATGGCTCACGAAGTGT CCACAGACTGTGCCACAATCTGGAAATGGCTCACGAAGTGT Direct Loss 1 0.830630507511833 1 0.885591149330139 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARIH2 ENSG00000177479 CDS Human protein_coding chr3:49011181 chr3:49011181 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_1037 0 0 1 0 2 ARIH2 chr3:49011132 3'AG 49011132 Downstream 50bp
chr3 49011181 49011181 1 + C T HNSC 49011181 + 49011161 49011201 41 CCACAGACTGTGCCACAATCCGGAAATGGCTCACGAAGTGT CCACAGACTGTGCCACAATCTGGAAATGGCTCACGAAGTGT Direct Loss 1 0.830630507511833 1 0.885591149330139 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARIH2 ENSG00000177479 CDS Human protein_coding chr3:49011181 chr3:49011181 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_1037 0 0 1 0 2 ARIH2 chr3:49011249 5'GT 49011249 Upstream 69bp
chr19 38871607 38871607 1 + C T HNSC 38871607 + 38871587 38871627 41 ATCCCCGCCGAGAGCTACACCTTCTTCATTGACATCCTGCT ATCCCCGCCGAGAGCTACACTTTCTTCATTGACATCCTGCT Direct Loss 1 0.136780410311013 1 0.0447574853897095 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMD8 ENSG00000099341 CDS Human protein_coding chr19:38871607 chr19:38871607 synonymous SNV . 0 21 hm5C_associated_SNPs_1038 0 0 1 0 2 PSMD8 chr19:38871539 3'AG 38871539 Downstream 69bp
chr19 38871607 38871607 1 + C T HNSC 38871607 + 38871587 38871627 41 ATCCCCGCCGAGAGCTACACCTTCTTCATTGACATCCTGCT ATCCCCGCCGAGAGCTACACTTTCTTCATTGACATCCTGCT Direct Loss 1 0.136780410311013 1 0.0447574853897095 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMD8 ENSG00000099341 CDS Human protein_coding chr19:38871607 chr19:38871607 synonymous SNV . 0 21 hm5C_associated_SNPs_1038 0 0 1 0 2 PSMD8 chr19:38871639 5'GT 38871639 Upstream 33bp
chr17 55194253 55194253 1 + C A HNSC 55194253 + 55194233 55194273 41 CACCCTGCCGTTTCAGGGAGCAGAAGTCCTTCTGGACAGTG CACCCTGCCGTTTCAGGGAGAAGAAGTCCTTCTGGACAGTG Direct Loss 1 0.511888190227776 1 0.354384303092957 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194253 chr17:55194253 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_1039 0 0 1 0 2 AKAP1 chr17:55194221 3'AG 55194221 Downstream 33bp
chr17 55194253 55194253 1 + C A HNSC 55194253 + 55194233 55194273 41 CACCCTGCCGTTTCAGGGAGCAGAAGTCCTTCTGGACAGTG CACCCTGCCGTTTCAGGGAGAAGAAGTCCTTCTGGACAGTG Direct Loss 1 0.511888190227776 1 0.354384303092957 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194253 chr17:55194253 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_1039 0 0 1 0 2 AKAP1 chr17:55194288 5'GT 55194288 Upstream 36bp
chr1 22332001 22332001 1 + C T HNSC 22332001 + 22331981 22332021 41 GTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTG GTGTGGCGGTAGCCTCATCGTCCCCGATTGGGTTGTGACTG Direct Loss 1 0.411368054977338 1 0.378407210111618 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332001 chr1:22332001 nonsynonymous SNV 0.031 1 21 hm5C_associated_SNPs_1040 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 62bp
chr1 22332001 22332001 1 + C T HNSC 22332001 + 22331981 22332021 41 GTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTG GTGTGGCGGTAGCCTCATCGTCCCCGATTGGGTTGTGACTG Direct Loss 1 0.411368054977338 1 0.378407210111618 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332001 chr1:22332001 nonsynonymous SNV 0.031 1 21 hm5C_associated_SNPs_1040 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 37bp
chr6 90331647 90331647 1 + C T HNSC 90331647 + 90331627 90331667 41 TTTGCCTCCTTCAGGTCTTGCGCTTCAGTCGTGGGCGAAGC TTTGCCTCCTTCAGGTCTTGTGCTTCAGTCGTGGGCGAAGC Direct Loss 1 0.156361667166466 1 0.188443094491959 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKRD6 ENSG00000083099;ENSG00000135299 CDS Human other chr6:90331647 chr6:90331647 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1041 0 0 0 0 2 ANKRD6 chr6:90331641 3'AG 90331641 Downstream 7bp
chr6 90331647 90331647 1 + C T HNSC 90331647 + 90331627 90331667 41 TTTGCCTCCTTCAGGTCTTGCGCTTCAGTCGTGGGCGAAGC TTTGCCTCCTTCAGGTCTTGTGCTTCAGTCGTGGGCGAAGC Direct Loss 1 0.156361667166466 1 0.188443094491959 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKRD6 ENSG00000083099;ENSG00000135299 CDS Human protein_coding chr6:90331647 chr6:90331647 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1041 0 0 0 0 2 ANKRD6 chr6:90331745 5'GT 90331745 Upstream 99bp
chr19 50335577 50335577 1 + C T HNSC 50335577 + 50335557 50335597 41 TCCCGCAGACCACCCTGGGCCCTTTGTTCCGGAACTCAAGG TCCCGCAGACCACCCTGGGCTCTTTGTTCCGGAACTCAAGG Direct Loss 1 0.0163110537366552 1 0.0243597030639648 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50335577 chr19:50335577 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1042 0 0 1 0 2 MED25 chr19:50335565 3'AG 50335565 Downstream 13bp
chr19 50335577 50335577 1 + C T HNSC 50335577 + 50335557 50335597 41 TCCCGCAGACCACCCTGGGCCCTTTGTTCCGGAACTCAAGG TCCCGCAGACCACCCTGGGCTCTTTGTTCCGGAACTCAAGG Direct Loss 1 0.0163110537366552 1 0.0243597030639648 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50335577 chr19:50335577 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1042 0 0 1 0 2 MED25 chr19:50335672 5'GT 50335672 Upstream 96bp
chr4 128811293 128811293 1 + C T HNSC 128811293 + 128811273 128811313 41 GCAAGACTAGGGGTATGGAGCCACCATGGGGTTATCAGAAT GCAAGACTAGGGGTATGGAGTCACCATGGGGTTATCAGAAT Direct Loss 1 0.197565608429209 1 0.235747665166855 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLK4 ENSG00000142731 CDS Human protein_coding chr4:128811293 chr4:128811293 nonsynonymous SNV 0.397 0 21 hm5C_associated_SNPs_1043 0 0 1 0 1 PLK4 chr4:128811391 5'GT 128811391 Upstream 99bp
chr7 142458497 142458497 1 + C A KIRC 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTGGATACCACTTCTGTGGTGGCTC Direct Loss 1 0.0726894624247147 1 0.0145175158977509 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458497 synonymous SNV . 0 21 hm5C_associated_SNPs_1045 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 92bp
chr7 142458497 142458497 1 + C A KIRC 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTGGATACCACTTCTGTGGTGGCTC Direct Loss 1 0.0726894624247147 1 0.0145175158977509 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458497 synonymous SNV . 0 21 hm5C_associated_SNPs_1045 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 18bp
chr7 142458497 142458497 1 + C A KIRC 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTGGATACCACTTCTGTGGTGGCTC Direct Loss 1 0.0726894624247147 1 0.0145175158977509 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458497 synonymous SNV . 0 21 hm5C_associated_SNPs_1045 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 69bp
chr17 66251944 66251944 1 + C A KIRC 66251944 + 66251924 66251964 41 GGAAGAAGCTGACCGGCGCCCTCTAAACCTTTGCCCTATCT GGAAGAAGCTGACCGGCGCCATCTAAACCTTTGCCCTATCT Direct Loss 1 0.677338534289579 1 0.588426351547241 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control AMZ2 ENSG00000196704 CDS Human protein_coding chr17:66251944 chr17:66251944 nonsynonymous SNV 0.956 3 21 hm5C_associated_SNPs_1046 0 0 1 0 1 AMZ2 chr17:66252017 5'GT 66252017 Upstream 74bp
chr2 238005475 238005475 1 + C T KIRC 238005475 + 238005455 238005495 41 TTGAATTTAGTTGCAGGGGCCCTGGATGTTTCCTTTAACAA TTGAATTTAGTTGCAGGGGCTCTGGATGTTTCCTTTAACAA Direct Loss 1 0.10775362227995 1 0.40841081738472 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COPS8 ENSG00000198612 CDS Human protein_coding chr2:238005475 chr2:238005475 synonymous SNV . 0 21 hm5C_associated_SNPs_1048 0 0 1 0 2 COPS8 chr2:238005465 3'AG 238005465 Downstream 11bp
chr2 238005475 238005475 1 + C T KIRC 238005475 + 238005455 238005495 41 TTGAATTTAGTTGCAGGGGCCCTGGATGTTTCCTTTAACAA TTGAATTTAGTTGCAGGGGCTCTGGATGTTTCCTTTAACAA Direct Loss 1 0.10775362227995 1 0.40841081738472 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COPS8 ENSG00000198612 CDS Human protein_coding chr2:238005475 chr2:238005475 synonymous SNV . 0 21 hm5C_associated_SNPs_1048 0 0 1 0 2 COPS8 chr2:238005512 5'GT 238005512 Upstream 38bp
chr15 64448267 64448267 1 - G A KIRC 64448267 - 64448247 64448287 41 GATGTGATCATCGCAGACTGCGGCAAGATCGAGGTGGAGAA GATGTGATCATCGCAGACTGTGGCAAGATCGAGGTGGAGAA Direct Loss 1 0.852995336127997 1 0.465864688158035 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PPIB ENSG00000166794 CDS Human protein_coding chr15:64448267 chr15:64448267 synonymous SNV . 0 21 hm5C_associated_SNPs_1049 0 0 1 0 1 PPIB chr15:64448344 3'AG 64448344 Downstream 78bp
chr7 142459716 142459716 1 + C A KIRC 142459716 + 142459696 142459736 41 CCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCTG CCAAGATCATCCGCCACCCCAAATACGACAGGAAGACTCTG Direct Loss 1 0.460740553548384 1 0.170384287834167 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459716 chr7:142459716 nonsynonymous SNV 0.007 0 21 hm5C_associated_SNPs_1050 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 92bp
chr17 37360793 37360793 1 + C T KIRC 37360793 + 37360773 37360813 41 ACCAGTGACCAGGCTGAGGCCCGCAGGTCTAAGACCAAGGA ACCAGTGACCAGGCTGAGGCTCGCAGGTCTAAGACCAAGGA Direct Loss 1 0.718444265860493 1 0.576197326183319 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360793 chr17:37360793 synonymous SNV . 0 21 hm5C_associated_SNPs_1051 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 16bp
chr17 37360846 37360846 1 + C T KIRC 37360846 + 37360826 37360866 41 CCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCATCA CCGTGAAGAGCGCCTCCAGGTCAAGAAGGAGGAGATCATCA Direct Loss 1 0.329285252908162 1 0.40271919965744 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360846 chr17:37360846 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1052 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 69bp
chr7 130021569 130021569 1 + C T KIRC 130021569 + 130021549 130021589 41 AAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACCAT AAGATCTTTCTGGAGTCCCATGGCATCAGCTATGAGACCAT Direct Loss 1 0.730421888697111 1 0.736636400222778 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021569 chr7:130021569 synonymous SNV . 0 21 hm5C_associated_SNPs_1053 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 99bp
chr7 130021569 130021569 1 + C T KIRC 130021569 + 130021549 130021589 41 AAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACCAT AAGATCTTTCTGGAGTCCCATGGCATCAGCTATGAGACCAT Direct Loss 1 0.730421888697111 1 0.736636400222778 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021569 chr7:130021569 synonymous SNV . 0 21 hm5C_associated_SNPs_1053 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 34bp
chrX 41088595 41088595 1 + C A KIRC 41088595 + 41088575 41088615 41 GAATCACTATCAAAAAAGAGCATACCAGTGTATAAAATGTA GAATCACTATCAAAAAAGAGAATACCAGTGTATAAAATGTA Direct Loss 1 0.00635390514054107 1 0.114968657493591 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41088595 chrX:41088595 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1054 0 0 1 0 2 USP9X chrX:41088506 3'AG 41088506 Downstream 90bp
chrX 41088595 41088595 1 + C A KIRC 41088595 + 41088575 41088615 41 GAATCACTATCAAAAAAGAGCATACCAGTGTATAAAATGTA GAATCACTATCAAAAAAGAGAATACCAGTGTATAAAATGTA Direct Loss 1 0.00635390514054107 1 0.114968657493591 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41088595 chrX:41088595 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1054 0 0 1 0 2 USP9X chrX:41088662 5'GT 41088662 Upstream 68bp
chr7 142458551 142458551 1 + C T KIRC 142458551 + 142458531 142458571 41 CAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGT CAGTGGGTGGTATCAGCAGGTCACTGCTACAAGTCGTAAGT Direct Loss 1 0.199238152936372 1 0.244919717311859 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458551 chr7:142458551 synonymous SNV . 0 21 hm5C_associated_SNPs_1055 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 72bp
chr7 142458551 142458551 1 + C T KIRC 142458551 + 142458531 142458571 41 CAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGT CAGTGGGTGGTATCAGCAGGTCACTGCTACAAGTCGTAAGT Direct Loss 1 0.199238152936372 1 0.244919717311859 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458551 chr7:142458551 synonymous SNV . 0 21 hm5C_associated_SNPs_1055 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 15bp
chr20 55049773 55049773 1 + C A KIRC 55049773 + 55049753 55049793 41 GTCATTGAATTTCTCTTGGACAAATCTGCAGAAAAGGCTCT GTCATTGAATTTCTCTTGGAAAAATCTGCAGAAAAGGCTCT Direct Loss 1 0.123831420374312 1 0.356261193752289 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55049773 chr20:55049773 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1056 0 0 1 0 2 RTFDC1 chr20:55049734 3'AG 55049734 Downstream 40bp
chr20 55049773 55049773 1 + C A KIRC 55049773 + 55049753 55049793 41 GTCATTGAATTTCTCTTGGACAAATCTGCAGAAAAGGCTCT GTCATTGAATTTCTCTTGGAAAAATCTGCAGAAAAGGCTCT Direct Loss 1 0.123831420374312 1 0.356261193752289 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55049773 chr20:55049773 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1056 0 0 1 0 2 RTFDC1 chr20:55049827 5'GT 55049827 Upstream 55bp
chr4 178262698 178262698 1 + C T KIRC 178262698 + 178262678 178262718 41 CGTCCTAATTGTGGTCAGTGCCACTGCAGAATAACTGTGTG CGTCCTAATTGTGGTCAGTGTCACTGCAGAATAACTGTGTG Direct Loss 1 0.214380106858116 1 0.152435302734375 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178262698 chr4:178262698 synonymous SNV . 0 21 hm5C_associated_SNPs_1060 0 0 1 0 2 NEIL3 chr4:178262630 3'AG 178262630 Downstream 69bp
chr4 178262698 178262698 1 + C T KIRC 178262698 + 178262678 178262718 41 CGTCCTAATTGTGGTCAGTGCCACTGCAGAATAACTGTGTG CGTCCTAATTGTGGTCAGTGTCACTGCAGAATAACTGTGTG Direct Loss 1 0.214380106858116 1 0.152435302734375 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178262698 chr4:178262698 synonymous SNV . 0 21 hm5C_associated_SNPs_1060 0 0 1 0 2 NEIL3 chr4:178262796 5'GT 178262796 Upstream 99bp
chr17 37358657 37358657 1 + C T KIRP 37358657 + 37358637 37358677 41 GGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCA GGCTCGATGCCGGAAAAACATCTTGGCCCGCCGGAAGGGCA Direct Loss 1 0.224464806215837 1 0.109541803598404 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358657 chr17:37358657 nonsynonymous SNV 0.995 1 21 hm5C_associated_SNPs_1061 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 88bp
chr17 37358657 37358657 1 + C T KIRP 37358657 + 37358637 37358677 41 GGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCA GGCTCGATGCCGGAAAAACATCTTGGCCCGCCGGAAGGGCA Direct Loss 1 0.224464806215837 1 0.109541803598404 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358657 chr17:37358657 nonsynonymous SNV 0.995 1 21 hm5C_associated_SNPs_1061 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 36bp
chr8 61775123 61775123 1 + C T KIRP 61775123 + 61775103 61775143 41 CCAGATGGGTGGAGCTATGGCGCCTCCAATGAAGGATCTAC CCAGATGGGTGGAGCTATGGTGCCTCCAATGAAGGATCTAC Direct Loss 1 0.142039968572361 1 0.236138761043549 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHD7 ENSG00000171316 CDS Human protein_coding chr8:61775123 chr8:61775123 nonsynonymous SNV 0.994 4 21 hm5C_associated_SNPs_1062 0 0 1 0 2 CHD7 chr8:61775107 3'AG 61775107 Downstream 17bp
chr8 61775123 61775123 1 + C T KIRP 61775123 + 61775103 61775143 41 CCAGATGGGTGGAGCTATGGCGCCTCCAATGAAGGATCTAC CCAGATGGGTGGAGCTATGGTGCCTCCAATGAAGGATCTAC Direct Loss 1 0.142039968572361 1 0.236138761043549 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHD7 ENSG00000171316 CDS Human protein_coding chr8:61775123 chr8:61775123 nonsynonymous SNV 0.994 4 21 hm5C_associated_SNPs_1062 0 0 1 0 2 CHD7 chr8:61775211 5'GT 61775211 Upstream 89bp
chr7 128407599 128407599 1 + C A KIRP 128407599 + 128407579 128407619 41 TTGAGTTTCGGGATAAGAACCGTGATGGGAAGATGGACAAG TTGAGTTTCGGGATAAGAACAGTGATGGGAAGATGGACAAG Direct Loss 1 0.807386905646315 1 0.569593012332916 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALU ENSG00000128595 CDS Human protein_coding chr7:128407599 chr7:128407599 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_1063 0 0 1 0 1 CALU chr7:128407510 3'AG 128407510 Downstream 90bp
chr18 7955215 7955215 1 + C T LGG 7955215 + 7955195 7955235 41 CTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGG CTCCATCAATGGGGATGGGCTCATTGTGGCCCGAGAGGTGG Direct Loss 1 0.079698169711781 1 0.0775205790996552 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955215 chr18:7955215 nonsynonymous SNV 0.953 4 21 hm5C_associated_SNPs_1064 0 0 0 0 1 PTPRM chr18:7955119 3'AG 7955119 Downstream 97bp
chr12 93881384 93881384 1 + C A LGG 93881384 + 93881364 93881404 41 AGGAAGGACCTATGATAGAACAACTTAGCAAAATGTTCTTT AGGAAGGACCTATGATAGAAAAACTTAGCAAAATGTTCTTT Direct Loss 1 0.528712450821994 1 0.174349009990692 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRPL42 ENSG00000198015 CDS Human protein_coding chr12:93881384 chr12:93881384 nonsynonymous SNV 0.997 0 21 hm5C_associated_SNPs_1066 0 0 1 1 1 MRPL42 chr12:93881436 5'GT 93881436 Upstream 53bp
chr8 28906544 28906544 1 + C T LGG 28906544 + 28906524 28906564 41 TCAAACAGTGATGATGTCGACGGGAATGACTACTCTGAGCA TCAAACAGTGATGATGTCGATGGGAATGACTACTCTGAGCA Direct Loss 1 0.935771613638352 1 0.884880006313324 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906544 chr8:28906544 synonymous SNV . 0 21 hm5C_associated_SNPs_1067 0 0 1 0 4 HMBOX1 chr8:28906471 3'AG 28906471 Downstream 74bp
chr8 28906544 28906544 1 + C T LGG 28906544 + 28906524 28906564 41 TCAAACAGTGATGATGTCGACGGGAATGACTACTCTGAGCA TCAAACAGTGATGATGTCGATGGGAATGACTACTCTGAGCA Direct Loss 1 0.935771613638352 1 0.884880006313324 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906544 chr8:28906544 synonymous SNV . 0 21 hm5C_associated_SNPs_1067 0 0 1 0 4 HMBOX1 chr8:28906474 3'AG 28906474 Downstream 71bp
chr8 28906544 28906544 1 + C T LGG 28906544 + 28906524 28906564 41 TCAAACAGTGATGATGTCGACGGGAATGACTACTCTGAGCA TCAAACAGTGATGATGTCGATGGGAATGACTACTCTGAGCA Direct Loss 1 0.935771613638352 1 0.884880006313324 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906544 chr8:28906544 synonymous SNV . 0 21 hm5C_associated_SNPs_1067 0 0 1 0 4 HMBOX1 chr8:28906477 3'AG 28906477 Downstream 68bp
chr8 28906544 28906544 1 + C T LGG 28906544 + 28906524 28906564 41 TCAAACAGTGATGATGTCGACGGGAATGACTACTCTGAGCA TCAAACAGTGATGATGTCGATGGGAATGACTACTCTGAGCA Direct Loss 1 0.935771613638352 1 0.884880006313324 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906544 chr8:28906544 synonymous SNV . 0 21 hm5C_associated_SNPs_1067 0 0 1 0 4 HMBOX1 chr8:28906565 5'GT 28906565 Upstream 22bp
chr2 220473305 220473305 1 + C T LGG 220473305 + 220473285 220473325 41 TTCTCTTGGTCTCTCCACAGCGGAACTCTGTCGCCCCTTGT TTCTCTTGGTCTCTCCACAGTGGAACTCTGTCGCCCCTTGT Direct Loss 1 0.571369364377944 1 0.733271718025208 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STK11IP ENSG00000144589 CDS Human protein_coding chr2:220473305 chr2:220473305 nonsynonymous SNV 0.961 0 21 hm5C_associated_SNPs_1068 0 0 1 0 1 STK11IP chr2:220473305 3'AG 220473305 Downstream 1bp
chr13 77570092 77570092 1 + C T LGG 77570092 + 77570072 77570112 41 ATTAACTGGCAAGAACTACACAATGGAATGGTATGAACTTT ATTAACTGGCAAGAACTACATAATGGAATGGTATGAACTTT Direct Loss 1 0.499687357821396 1 0.153371632099152 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CLN5 ENSG00000102805 CDS Human protein_coding chr13:77570092 chr13:77570092 nonsynonymous SNV 0.967 5 21 hm5C_associated_SNPs_1069 0 0 1 0 1 CLN5 chr13:77570037 3'AG 77570037 Downstream 56bp
chrX 12838861 12838861 1 + C T LGG 12838861 + 12838841 12838881 41 AAATAATGCCGCCTTTGAGGCTGTTGTCGTCACAAACACAA AAATAATGCCGCCTTTGAGGTTGTTGTCGTCACAAACACAA Direct Loss 1 0.318023466721856 1 0.0488978028297424 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12838861 chrX:12838861 nonsynonymous SNV 0.905 1 21 hm5C_associated_SNPs_1070 0 0 1 0 2 PRPS2 chrX:12838763 3'AG 12838763 Downstream 99bp
chrX 12838861 12838861 1 + C T LGG 12838861 + 12838841 12838881 41 AAATAATGCCGCCTTTGAGGCTGTTGTCGTCACAAACACAA AAATAATGCCGCCTTTGAGGTTGTTGTCGTCACAAACACAA Direct Loss 1 0.318023466721856 1 0.0488978028297424 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12838861 chrX:12838861 nonsynonymous SNV 0.905 1 21 hm5C_associated_SNPs_1070 0 0 1 0 2 PRPS2 chrX:12838922 5'GT 12838922 Upstream 62bp
chr15 40509802 40509802 1 + C T LGG 40509802 + 40509782 40509822 41 CTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGTACAGAT CTGGATGTTTTTACCCTCAGTGGCTTTCGGACTGTACAGAT Direct Loss 1 0.373605747748993 1 0.476916998624802 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BUB1B ENSG00000156970;ENSG00000259288 CDS Human other chr15:40509802 chr15:40509802 synonymous SNV . 0 21 hm5C_associated_SNPs_1071 0 0 1 0 1 BUB1B chr15:40509868 5'GT 40509868 Upstream 67bp
chr5 908507 908507 1 + C T LGG 908507 + 908487 908527 41 CGCCCGAAATGCCTGCAGGGCGGGCACCGAGCCATCAGATG CGCCCGAAATGCCTGCAGGGTGGGCACCGAGCCATCAGATG Direct Loss 1 0.538409863275737 1 0.380428493022919 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908507 chr5:908507 nonsynonymous SNV 0.346 5 21 hm5C_associated_SNPs_1072 0 0 0 0 2 TRIP13 chr5:908470 3'AG 908470 Downstream 38bp
chr5 908507 908507 1 + C T LGG 908507 + 908487 908527 41 CGCCCGAAATGCCTGCAGGGCGGGCACCGAGCCATCAGATG CGCCCGAAATGCCTGCAGGGTGGGCACCGAGCCATCAGATG Direct Loss 1 0.538409863275737 1 0.380428493022919 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908507 chr5:908507 nonsynonymous SNV 0.346 5 21 hm5C_associated_SNPs_1072 0 0 0 0 2 TRIP13 chr5:908576 5'GT 908576 Upstream 70bp
chr19 17424890 17424890 1 + C T LGG 17424890 + 17424870 17424910 41 CAATTTTAGTCGATTTCACGCGGACTCCGTGTGCAAAGCCT CAATTTTAGTCGATTTCACGTGGACTCCGTGTGCAAAGCCT Direct Loss 1 0.211689655740085 1 0.118880391120911 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDA1 ENSG00000130311 CDS Human protein_coding chr19:17424890 chr19:17424890 nonsynonymous SNV 0.431 1 21 hm5C_associated_SNPs_1073 0 0 1 0 2 DDA1 chr19:17424832 3'AG 17424832 Downstream 59bp
chr19 17424890 17424890 1 + C T LGG 17424890 + 17424870 17424910 41 CAATTTTAGTCGATTTCACGCGGACTCCGTGTGCAAAGCCT CAATTTTAGTCGATTTCACGTGGACTCCGTGTGCAAAGCCT Direct Loss 1 0.211689655740085 1 0.118880391120911 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDA1 ENSG00000130311 CDS Human protein_coding chr19:17424890 chr19:17424890 nonsynonymous SNV 0.431 1 21 hm5C_associated_SNPs_1073 0 0 1 0 2 DDA1 chr19:17424912 5'GT 17424912 Upstream 23bp
chr7 101891755 101891755 1 + C T LGG 101891755 + 101891735 101891775 41 GGGAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGC GGGAGTCAGGGCCAGGCGGGTGCCAGCGACTCACCCTCGGC Direct Loss 1 0.639117438295437 1 0.55613249540329 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891755 chr7:101891755 synonymous SNV . 0 21 hm5C_associated_SNPs_1075 0 0 1 0 1 CUX1 chr7:101891692 3'AG 101891692 Downstream 64bp
chr1 230822730 230822730 1 + C A LGG 230822730 + 230822710 230822750 41 TCCCAAGGAGATCAAGAAACCTTTGGTAACTGGTAGCAAAG TCCCAAGGAGATCAAGAAACATTTGGTAACTGGTAGCAAAG Direct Loss 1 0.289503632448754 1 0.0430105626583099 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COG2 ENSG00000135775 CDS Human protein_coding chr1:230822730 chr1:230822730 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_1077 0 0 0 0 1 COG2 chr1:230822681 3'AG 230822681 Downstream 50bp
chr1 27269155 27269155 1 + C T LGG 27269155 + 27269135 27269175 41 CCCTGATTGTAAGCAGGATACTGAGGAAGATGAGGAGGAAG CCCTGATTGTAAGCAGGATATTGAGGAAGATGAGGAGGAAG Direct Loss 1 0.588803681875048 1 0.22691684961319 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NUDC ENSG00000090273 CDS Human protein_coding chr1:27269155 chr1:27269155 nonsynonymous SNV 0.409 1 21 hm5C_associated_SNPs_1078 0 0 1 0 1 NUDC chr1:27269151 3'AG 27269151 Downstream 5bp
chr11 74329667 74329667 1 + C A LGG 74329667 + 74329647 74329687 41 AAAAGTTTGAGCAGTCACATCTTCACATGTCAAGTGAGACA AAAAGTTTGAGCAGTCACATATTCACATGTCAAGTGAGACA Direct Loss 1 0.383780341250543 1 0.108015477657318 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329667 chr11:74329667 nonsynonymous SNV 0.846 0 21 hm5C_associated_SNPs_1079 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 86bp
chr11 380183 380183 1 + C T LGG 380183 + 380163 380203 41 GCGCTCCGCCGGGCTGCAGGCGGGAGTGGACGCGGTAGAGG GCGCTCCGCCGGGCTGCAGGTGGGAGTGGACGCGGTAGAGG Direct Loss 1 0.919842123281043 1 0.84580671787262 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:380183 chr11:380183 nonsynonymous SNV 0.468 0 21 hm5C_associated_SNPs_1080 0 0 1 0 2 B4GALNT4 chr11:380130 3'AG 380130 Downstream 54bp
chr11 380183 380183 1 + C T LGG 380183 + 380163 380203 41 GCGCTCCGCCGGGCTGCAGGCGGGAGTGGACGCGGTAGAGG GCGCTCCGCCGGGCTGCAGGTGGGAGTGGACGCGGTAGAGG Direct Loss 1 0.919842123281043 1 0.84580671787262 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:380183 chr11:380183 nonsynonymous SNV 0.468 0 21 hm5C_associated_SNPs_1080 0 0 1 0 2 B4GALNT4 chr11:380202 5'GT 380202 Upstream 20bp
chrX 149905115 149905115 1 + C T LGG 149905115 + 149905095 149905135 41 GTGCTTACCCAAATGCAGAACTTGTGTTCTTGGAGATCCAC GTGCTTACCCAAATGCAGAATTTGTGTTCTTGGAGATCCAC Direct Loss 1 0.146700338750771 1 0.0302834510803223 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149905115 chrX:149905115 nonsynonymous SNV 0.361 3 21 hm5C_associated_SNPs_1081 0 0 1 1 1 MTMR1 chrX:149905067 3'AG 149905067 Downstream 49bp
chr17 27075049 27075049 1 + C A LGG 27075049 + 27075029 27075069 41 CACCAGGGCCACCTGAATACCTGCAGCTTCAATGTCATTCC CACCAGGGCCACCTGAATACATGCAGCTTCAATGTCATTCC Direct Loss 1 0.873513228887224 1 0.0763300955295563 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRAF4 ENSG00000076604 CDS Human protein_coding chr17:27075049 chr17:27075049 synonymous SNV . 0 21 hm5C_associated_SNPs_1082 0 0 1 0 1 TRAF4 chr17:27075035 3'AG 27075035 Downstream 15bp
chr19 13054427 13054427 1 + C T LGG 13054427 + 13054407 13054447 41 TGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA TGAGGAGTTTGGCAACGAGATGTGGGGCGTAACAAAGGTGA Direct Loss 1 0.698547071001074 1 0.386668920516968 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054427 chr19:13054427 nonsynonymous SNV 0.964 2 21 hm5C_associated_SNPs_1083 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 77bp
chr19 13054427 13054427 1 + C T LGG 13054427 + 13054407 13054447 41 TGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA TGAGGAGTTTGGCAACGAGATGTGGGGCGTAACAAAGGTGA Direct Loss 1 0.698547071001074 1 0.386668920516968 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054427 chr19:13054427 nonsynonymous SNV 0.964 2 21 hm5C_associated_SNPs_1083 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 17bp
chr9 135929296 135929296 1 + C T LGG 135929296 + 135929276 135929316 41 ATGCCAAGATTTATCAAGTCCTCGATTTCCGAATCCGTTGT ATGCCAAGATTTATCAAGTCTTCGATTTCCGAATCCGTTGT Direct Loss 1 0.766827232726048 1 0.893106341362 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135929296 chr9:135929296 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1084 0 0 1 0 2 GTF3C5 chr9:135929215 3'AG 135929215 Downstream 82bp
chr9 135929296 135929296 1 + C T LGG 135929296 + 135929276 135929316 41 ATGCCAAGATTTATCAAGTCCTCGATTTCCGAATCCGTTGT ATGCCAAGATTTATCAAGTCTTCGATTTCCGAATCCGTTGT Direct Loss 1 0.766827232726048 1 0.893106341362 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135929296 chr9:135929296 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1084 0 0 1 0 2 GTF3C5 chr9:135929329 5'GT 135929329 Upstream 34bp
chr2 233681620 233681620 1 + C T LGG 233681620 + 233681600 233681640 41 AGGCAGAAATGAGGGCAAAACGGGAAGAGGAAGAGCGAAAG AGGCAGAAATGAGGGCAAAATGGGAAGAGGAAGAGCGAAAG Direct Loss 1 0.92490564517655 1 0.640946805477142 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233681620 chr2:233681620 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_1086 0 0 1 0 1 GIGYF2 chr2:233681581 3'AG 233681581 Downstream 40bp
chr1 36354031 36354031 1 + C T LGG 36354031 + 36354011 36354051 41 GCCTCTTTGTCTTGTAGCTGCGGGCGCTTACCTGCCCCCCC GCCTCTTTGTCTTGTAGCTGTGGGCGCTTACCTGCCCCCCC Direct Loss 1 0.736420449438909 1 0.950195133686066 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AGO1 ENSG00000092847 CDS Human protein_coding chr1:36354031 chr1:36354031 nonsynonymous SNV 0.973 0 21 hm5C_associated_SNPs_1088 0 0 1 0 1 AGO1 chr1:36354028 3'AG 36354028 Downstream 4bp
chr21 44189185 44189185 1 + C T LGG 44189185 + 44189165 44189205 41 CTGTGGCACCGTTCATGGACCGAGACAAAGTGACCAAGGCC CTGTGGCACCGTTCATGGACTGAGACAAAGTGACCAAGGCC Direct Loss 1 0.790409079790098 1 0.193848580121994 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDE9A ENSG00000160191 CDS Human protein_coding chr21:44189185 chr21:44189185 stopgain 1.000 1 21 hm5C_associated_SNPs_1089 0 0 0 0 2 PDE9A chr21:44189137 3'AG 44189137 Downstream 49bp
chr21 44189185 44189185 1 + C T LGG 44189185 + 44189165 44189205 41 CTGTGGCACCGTTCATGGACCGAGACAAAGTGACCAAGGCC CTGTGGCACCGTTCATGGACTGAGACAAAGTGACCAAGGCC Direct Loss 1 0.790409079790098 1 0.193848580121994 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDE9A ENSG00000160191 CDS Human protein_coding chr21:44189185 chr21:44189185 stopgain 1.000 1 21 hm5C_associated_SNPs_1089 0 0 0 0 2 PDE9A chr21:44189265 5'GT 44189265 Upstream 81bp
chr18 13056654 13056654 1 + C T LIHC 13056654 + 13056634 13056674 41 GTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCATGGGA GTGCCGTCTGTTGGTACAAATTGTGGAATTGAACCATGGGA Direct Loss 1 0.314572355087308 1 0.096413254737854 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056654 chr18:13056654 synonymous SNV . 0 21 hm5C_associated_SNPs_1090 0 0 1 0 1 CEP192 chr18:13056697 5'GT 13056697 Upstream 44bp
chr12 132546658 132546658 1 + C A LIHC 132546658 + 132546638 132546678 41 CTGTTTGCCTTTTCTAGACGCCGGGAGGCTCTGCTCCCGCC CTGTTTGCCTTTTCTAGACGACGGGAGGCTCTGCTCCCGCC Direct Loss 1 0.305123987650174 1 0.86883819103241 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546658 chr12:132546658 nonsynonymous SNV 0.235 2 21 hm5C_associated_SNPs_1091 0 0 0 0 1 EP400 chr12:132546655 3'AG 132546655 Downstream 4bp
chr7 149422538 149422538 1 + C A LIHC 149422538 + 149422518 149422558 41 CCAGCCAGGAGACTCTAGGTCTCAGAAGCCTGAACTGCAAC CCAGCCAGGAGACTCTAGGTATCAGAAGCCTGAACTGCAAC Direct Loss 1 0.361673959811076 1 0.231815248727798 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149422538 chr7:149422538 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_1092 0 0 0 0 1 KRBA1 chr7:149422579 5'GT 149422579 Upstream 42bp
chr1 26142138 26142138 1 + C A LIHC 26142138 + 26142118 26142158 41 TCTCATCCACCTTTGAAGACCCGTCCACGGCCACCTACATG TCTCATCCACCTTTGAAGACACGTCCACGGCCACCTACATG Direct Loss 1 0.0284104088816597 1 0.207869619131088 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26142138 chr1:26142138 nonsynonymous SNV 0.998 5 21 hm5C_associated_SNPs_1093 0 0 1 0 1 SELENON chr1:26142039 3'AG 26142039 Downstream 100bp
chr20 18462420 18462420 1 + C T LIHC 18462420 + 18462400 18462440 41 CAATCCAATCATCCCTCCCACAGGTTTGGTCCGGGCACCCT CAATCCAATCATCCCTCCCATAGGTTTGGTCCGGGCACCCT Direct Loss 1 0.750292284069985 1 0.60378497838974 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLR3F ENSG00000132664 CDS Human protein_coding chr20:18462420 chr20:18462420 nonsynonymous SNV 0.687 2 21 hm5C_associated_SNPs_1095 0 0 1 0 1 POLR3F chr20:18462454 5'GT 18462454 Upstream 35bp
chr3 4856235 4856235 1 + C A LIHC 4856235 + 4856215 4856255 41 TAGGAGATGTACTCAGGAAGCCGTCCAAAGAGGTAAATTAA TAGGAGATGTACTCAGGAAGACGTCCAAAGAGGTAAATTAA Direct Loss 1 0.0423176880143843 1 0.547383546829224 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4856235 chr3:4856235 nonsynonymous SNV 0.988 5 21 hm5C_associated_SNPs_1096 0 0 1 0 1 ITPR1 chr3:4856246 5'GT 4856246 Upstream 12bp
chr3 184037534 184037534 1 + C G LIHC 184037534 + 184037514 184037554 41 TCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAACCAGC TCCCACTGGCGTGGCCCCCAGCCCAGTTTTGATGAACCAGC Direct Loss 1 0.631762414515619 1 0.312793642282486 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037534 chr3:184037534 nonsynonymous SNV 0.972 0 21 hm5C_associated_SNPs_1097 0 0 1 0 2 EIF4G1 chr3:184037477 3'AG 184037477 Downstream 58bp
chr3 184037534 184037534 1 + C G LIHC 184037534 + 184037514 184037554 41 TCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAACCAGC TCCCACTGGCGTGGCCCCCAGCCCAGTTTTGATGAACCAGC Direct Loss 1 0.631762414515619 1 0.312793642282486 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037534 chr3:184037534 nonsynonymous SNV 0.972 0 21 hm5C_associated_SNPs_1097 0 0 1 0 2 EIF4G1 chr3:184037589 5'GT 184037589 Upstream 56bp
chr11 67786067 67786067 1 + C T LIHC 67786067 + 67786047 67786087 41 CACCCTGGCCCTCAGGAACTCCGGGCCTGGATGAAGGACGA CACCCTGGCCCTCAGGAACTTCGGGCCTGGATGAAGGACGA Direct Loss 1 0.43936123058494 1 0.696909487247467 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH3B1 ENSG00000006534 splicing Human protein_coding chr11:67786067 chr11:67786067 . . 0 21 hm5C_associated_SNPs_1098 0 0 0 0 3 ALDH3B1 chr11:67785997 3'AG 67785997 Downstream 71bp
chr11 67786067 67786067 1 + C T LIHC 67786067 + 67786047 67786087 41 CACCCTGGCCCTCAGGAACTCCGGGCCTGGATGAAGGACGA CACCCTGGCCCTCAGGAACTTCGGGCCTGGATGAAGGACGA Direct Loss 1 0.43936123058494 1 0.696909487247467 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH3B1 ENSG00000006534 splicing Human protein_coding chr11:67786067 chr11:67786067 . . 0 21 hm5C_associated_SNPs_1098 0 0 0 0 3 ALDH3B1 chr11:67786062 3'AG 67786062 Downstream 6bp
chr11 67786067 67786067 1 + C T LIHC 67786067 + 67786047 67786087 41 CACCCTGGCCCTCAGGAACTCCGGGCCTGGATGAAGGACGA CACCCTGGCCCTCAGGAACTTCGGGCCTGGATGAAGGACGA Direct Loss 1 0.43936123058494 1 0.696909487247467 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH3B1 ENSG00000006534 splicing Human protein_coding chr11:67786067 chr11:67786067 . . 0 21 hm5C_associated_SNPs_1098 0 0 0 0 3 ALDH3B1 chr11:67786106 5'GT 67786106 Upstream 40bp
chr5 223682 223682 1 + C T LIHC 223682 + 223662 223702 41 ATCTGCTAAAGTTTCAGATTCCGTAAGTTCATGCTTTTTGT ATCTGCTAAAGTTTCAGATTTCGTAAGTTCATGCTTTTTGT Direct Loss 1 0.184016468322851 1 0.120882093906403 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SDHA ENSG00000073578 CDS Human protein_coding chr5:223682 chr5:223682 nonsynonymous SNV 0.923 0 21 hm5C_associated_SNPs_1100 0 0 1 0 2 SDHA chr5:223597 3'AG 223597 Downstream 86bp
chr5 223682 223682 1 + C T LIHC 223682 + 223662 223702 41 ATCTGCTAAAGTTTCAGATTCCGTAAGTTCATGCTTTTTGT ATCTGCTAAAGTTTCAGATTTCGTAAGTTCATGCTTTTTGT Direct Loss 1 0.184016468322851 1 0.120882093906403 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SDHA ENSG00000073578 CDS Human protein_coding chr5:223682 chr5:223682 nonsynonymous SNV 0.923 0 21 hm5C_associated_SNPs_1100 0 0 1 0 2 SDHA chr5:223683 5'GT 223683 Upstream 2bp
chr1 94972193 94972193 1 + C A LIHC 94972193 + 94972173 94972213 41 GCTACATTTATAGTCATTGTCGAAAGGTAAGTACGCAGGTG GCTACATTTATAGTCATTGTAGAAAGGTAAGTACGCAGGTG Direct Loss 1 0.896957395485601 1 0.679623663425446 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94972193 chr1:94972193 synonymous SNV . 0 21 hm5C_associated_SNPs_1101 0 0 1 0 2 ABCD3 chr1:94972094 3'AG 94972094 Downstream 100bp
chr1 94972193 94972193 1 + C A LIHC 94972193 + 94972173 94972213 41 GCTACATTTATAGTCATTGTCGAAAGGTAAGTACGCAGGTG GCTACATTTATAGTCATTGTAGAAAGGTAAGTACGCAGGTG Direct Loss 1 0.896957395485601 1 0.679623663425446 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94972193 chr1:94972193 synonymous SNV . 0 21 hm5C_associated_SNPs_1101 0 0 1 0 2 ABCD3 chr1:94972198 5'GT 94972198 Upstream 6bp
chr9 98678714 98678714 1 + C A LIHC 98678714 + 98678694 98678734 41 AGTTGCCTAAGAAGGAAGACCGGGTAAGAACCGCATTTGTA AGTTGCCTAAGAAGGAAGACAGGGTAAGAACCGCATTTGTA Direct Loss 1 0.499794423334118 1 0.663521707057953 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ERCC6L2 ENSG00000182150 CDS Human protein_coding chr9:98678714 chr9:98678714 synonymous SNV . 0 21 hm5C_associated_SNPs_1104 0 0 0 0 1 ERCC6L2 chr9:98678716 5'GT 98678716 Upstream 3bp
chr13 28752020 28752020 1 + C A LIHC 28752020 + 28752000 28752040 41 AGATCCTCTAACATCACCTGCTTCATCCTTGTTTAATGACT AGATCCTCTAACATCACCTGATTCATCCTTGTTTAATGACT Direct Loss 1 0.121461492943893 1 0.253241896629333 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752020 chr13:28752020 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_1105 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 19bp
chr13 28752020 28752020 1 + C A LIHC 28752020 + 28752000 28752040 41 AGATCCTCTAACATCACCTGCTTCATCCTTGTTTAATGACT AGATCCTCTAACATCACCTGATTCATCCTTGTTTAATGACT Direct Loss 1 0.121461492943893 1 0.253241896629333 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752020 chr13:28752020 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_1105 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 53bp
chr7 142460286 142460286 1 + C T LIHC 142460286 + 142460266 142460306 41 TTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTG TTCCTGATCCTCACAGCCGATTACCCAGACGAGCTGCAGTG Direct Loss 1 0.117046856700886 1 0.320694267749786 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460286 chr7:142460286 synonymous SNV . 0 21 hm5C_associated_SNPs_1106 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 5bp
chr7 12269401 12269401 1 + C T LIHC 12269401 + 12269381 12269421 41 AAACAGTTATTGGAAAGGCACGCTTAAACAACATAACCATT AAACAGTTATTGGAAAGGCATGCTTAAACAACATAACCATT Direct Loss 1 0.2137750998538 1 0.0480413436889648 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM106B ENSG00000106460 CDS Human protein_coding chr7:12269401 chr7:12269401 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_1107 0 0 1 0 2 TMEM106B chr7:12269305 3'AG 12269305 Downstream 97bp
chr7 12269401 12269401 1 + C T LIHC 12269401 + 12269381 12269421 41 AAACAGTTATTGGAAAGGCACGCTTAAACAACATAACCATT AAACAGTTATTGGAAAGGCATGCTTAAACAACATAACCATT Direct Loss 1 0.2137750998538 1 0.0480413436889648 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM106B ENSG00000106460 CDS Human protein_coding chr7:12269401 chr7:12269401 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_1107 0 0 1 0 2 TMEM106B chr7:12269445 5'GT 12269445 Upstream 45bp
chr7 142459706 142459706 1 + C G LUAD 142459706 + 142459686 142459726 41 ATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAG ATCAATGCAGCCAAGATCATGCGCCACCCCCAATACGACAG Direct Loss 1 0.303244902119811 1 0.45319852232933 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459706 chr7:142459706 nonsynonymous SNV 0.013 5 21 hm5C_associated_SNPs_1108 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 82bp
chr20 49458380 49458380 1 + C T LUAD 49458380 + 49458360 49458400 41 GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGCGGAG GCTGAGCGGGACCATGGGGCTTTCCCTCAGGCCCTGCGGAG Direct Loss 1 0.304566415050823 1 0.0647402703762054 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49458380 chr20:49458380 synonymous SNV . 0 21 hm5C_associated_SNPs_1110 0 0 1 0 2 BCAS4 chr20:49458303 3'AG 49458303 Downstream 78bp
chr20 49458380 49458380 1 + C T LUAD 49458380 + 49458360 49458400 41 GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGCGGAG GCTGAGCGGGACCATGGGGCTTTCCCTCAGGCCCTGCGGAG Direct Loss 1 0.304566415050823 1 0.0647402703762054 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49458380 chr20:49458380 synonymous SNV . 0 21 hm5C_associated_SNPs_1110 0 0 1 0 2 BCAS4 chr20:49458437 5'GT 49458437 Upstream 58bp
chr6 31713049 31713049 1 + C T LUAD 31713049 + 31713029 31713069 41 TAAGAGTGAGTCTCACCCCTCAGTGTACAAAGTGGCCAGTG TAAGAGTGAGTCTCACCCCTTAGTGTACAAAGTGGCCAGTG Direct Loss 1 0.380127828948994 1 0.119833678007126 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MSH5 ENSG00000204410;ENSG00000255152 CDS Human other chr6:31713049 chr6:31713049 nonsynonymous SNV 0.976 4 21 hm5C_associated_SNPs_1112 0 0 0 0 1 MSH5 chr6:31713096 5'GT 31713096 Upstream 48bp
chr17 4905834 4905834 1 + C T LUAD 4905834 + 4905814 4905854 41 GTCGGGGTTCTCTGCGGGTCCGGGAGCACCCCATCCTGGGC GTCGGGGTTCTCTGCGGGTCTGGGAGCACCCCATCCTGGGC Direct Loss 1 0.899572967625281 1 0.902289867401123 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905834 chr17:4905834 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1113 1 0 1 0 1 KIF1C chr17:4905759 3'AG 4905759 Downstream 76bp
chr2 233671355 233671355 1 + C T LUAD 233671355 + 233671335 233671375 41 TTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTAC TTTTCTCCAGGTCCAGCTCCTCCTCCTCATATGGTAAGTAC Direct Loss 1 0.0530525730803623 1 0.0617108941078186 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671355 chr2:233671355 synonymous SNV . 0 21 hm5C_associated_SNPs_1114 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 13bp
chr10 112361869 112361869 1 + C T LUAD 112361869 + 112361849 112361889 41 GTTAGATAGGGGTTACAAATCAATCATGGAACTGATGAATG GTTAGATAGGGGTTACAAATTAATCATGGAACTGATGAATG Direct Loss 1 0.293507665411334 1 0.0796924531459808 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMC3 ENSG00000108055 CDS Human protein_coding chr10:112361869 chr10:112361869 nonsynonymous SNV 0.839 3 21 hm5C_associated_SNPs_1115 0 0 1 0 1 SMC3 chr10:112361936 5'GT 112361936 Upstream 68bp
chr11 73078683 73078683 1 + C T LUAD 73078683 + 73078663 73078703 41 CTCCCCTTGGCACCGAGGCCCCGCCCCTGCCAGGCCTAAAA CTCCCCTTGGCACCGAGGCCTCGCCCCTGCCAGGCCTAAAA Direct Loss 1 0.0388300598368017 1 0.249710887670517 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73078683 chr11:73078683 nonsynonymous SNV 0.016 0 21 hm5C_associated_SNPs_1116 0 0 0 0 1 ARHGEF17 chr11:73078629 3'AG 73078629 Downstream 55bp
chr7 142459819 142459819 1 + C A LUAD 142459819 + 142459799 142459839 41 CATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGT CATCTCTCTGCCCACCGCCCATCCAGCCACTGGCACGAAGT Direct Loss 1 0.682284715677842 1 0.736703038215637 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459819 chr7:142459819 nonsynonymous SNV 0.000 3 21 hm5C_associated_SNPs_1119 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 60bp
chr7 130021012 130021012 1 + C T LUAD 130021012 + 130020992 130021032 41 AGGAGCTGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGG AGGAGCTGGAGGACCTGGAGTACCTGCAGGTCAGAAGAGGG Direct Loss 1 0.297401474900831 1 0.189280837774277 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021012 chr7:130021012 nonsynonymous SNV 0.995 0 21 hm5C_associated_SNPs_1120 0 0 0 0 2 CPA1 chr7:130020939 3'AG 130020939 Downstream 74bp
chr7 130021012 130021012 1 + C T LUAD 130021012 + 130020992 130021032 41 AGGAGCTGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGG AGGAGCTGGAGGACCTGGAGTACCTGCAGGTCAGAAGAGGG Direct Loss 1 0.297401474900831 1 0.189280837774277 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021012 chr7:130021012 nonsynonymous SNV 0.995 0 21 hm5C_associated_SNPs_1120 0 0 0 0 2 CPA1 chr7:130021020 5'GT 130021020 Upstream 9bp
chr3 184082795 184082795 1 + C G LUAD 184082795 + 184082775 184082815 41 GTGAATCTTTCAAGATGGATCTAATCTTAGATGTAAACATT GTGAATCTTTCAAGATGGATGTAATCTTAGATGTAAACATT Direct Loss 1 0.206119937976136 1 0.0324731171131134 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2H ENSG00000163882 CDS Human protein_coding chr3:184082795 chr3:184082795 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_1121 0 0 1 1 1 POLR2H chr3:184082837 5'GT 184082837 Upstream 43bp
chr7 142460411 142460411 1 + C T LUAD 142460411 + 142460391 142460431 41 CCTTGAGGGAGGCAAGGATTCATGTCAGGTGATTTGACCAA CCTTGAGGGAGGCAAGGATTTATGTCAGGTGATTTGACCAA Direct Loss 1 0.527719953889409 1 0.0852170586585999 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460411 chr7:142460411 nonsynonymous SNV 0.962 3 21 hm5C_associated_SNPs_1122 0 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 8bp
chr7 142460317 142460317 1 + C T LUAD 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGGATGCTTCTGTGCTGAGCCAGGCTAAG Direct Loss 1 0.22622105328301 1 0.461940824985504 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460317 nonsynonymous SNV 0.003 2 21 hm5C_associated_SNPs_1123 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 36bp
chr4 128816214 128816214 1 + C G LUAD 128816214 + 128816194 128816234 41 ATCAGCACAACTTTTGAAATCTGTTTTTGTGAAAAATGTTG ATCAGCACAACTTTTGAAATGTGTTTTTGTGAAAAATGTTG Direct Loss 1 0.203087428357022 1 0.0553325116634369 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLK4 ENSG00000142731 CDS Human protein_coding chr4:128816214 chr4:128816214 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1124 0 0 0 0 1 PLK4 chr4:128816248 5'GT 128816248 Upstream 35bp
chr2 71148413 71148413 1 + C T LUAD 71148413 + 71148393 71148433 41 AGCTGAACCTCTCCGAGACCCAGGTAAGAGACCAGGGCCAG AGCTGAACCTCTCCGAGACCTAGGTAAGAGACCAGGGCCAG Direct Loss 1 0.72143957656113 1 0.736040413379669 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VAX2 ENSG00000116035 CDS Human protein_coding chr2:71148413 chr2:71148413 stopgain 0.997 1 21 hm5C_associated_SNPs_1127 0 0 0 0 1 VAX2 chr2:71148415 5'GT 71148415 Upstream 3bp
chr2 135883796 135883796 1 + C T LUAD 135883796 + 135883776 135883816 41 CCTCATCTGACCGAAGGGATCATTGTGGATAATGATGTTTA CCTCATCTGACCGAAGGGATTATTGTGGATAATGATGTTTA Direct Loss 1 0.153988088251806 1 0.0711391270160675 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RAB3GAP1 ENSG00000115839 CDS Human protein_coding chr2:135883796 chr2:135883796 synonymous SNV . 0 21 hm5C_associated_SNPs_1130 0 0 1 0 2 RAB3GAP1 chr2:135883751 3'AG 135883751 Downstream 46bp
chr2 135883796 135883796 1 + C T LUAD 135883796 + 135883776 135883816 41 CCTCATCTGACCGAAGGGATCATTGTGGATAATGATGTTTA CCTCATCTGACCGAAGGGATTATTGTGGATAATGATGTTTA Direct Loss 1 0.153988088251806 1 0.0711391270160675 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RAB3GAP1 ENSG00000115839 CDS Human protein_coding chr2:135883796 chr2:135883796 synonymous SNV . 0 21 hm5C_associated_SNPs_1130 0 0 1 0 2 RAB3GAP1 chr2:135883819 5'GT 135883819 Upstream 24bp
chr13 94679996 94679996 1 + C A LUAD 94679996 + 94679976 94680016 41 TCTGCAGGTCAGCCCAACCCCAGGGTGTATCCGTGCCCTCA TCTGCAGGTCAGCCCAACCCAAGGGTGTATCCGTGCCCTCA Direct Loss 1 0.690383846044914 1 0.905043840408325 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPC6 ENSG00000183098 CDS Human protein_coding chr13:94679996 chr13:94679996 nonsynonymous SNV 0.991 1 21 hm5C_associated_SNPs_1132 0 0 1 0 1 GPC6 chr13:94679983 3'AG 94679983 Downstream 14bp
chr7 130021575 130021575 1 + C T LUAD 130021575 + 130021555 130021595 41 TTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGA TTTCTGGAGTCCCACGGCATTAGCTATGAGACCATGATCGA Direct Loss 1 0.693832134123598 1 0.750151455402374 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021575 chr7:130021575 synonymous SNV . 0 21 hm5C_associated_SNPs_1133 0 0 0 0 1 CPA1 chr7:130021536 3'AG 130021536 Downstream 40bp
chrX 106884134 106884134 1 + C A LUAD 106884134 + 106884114 106884154 41 TTCCTCCCCTCCATTTAGAGCCGGGCGCCAATCTCAGCCAA TTCCTCCCCTCCATTTAGAGACGGGCGCCAATCTCAGCCAA Direct Loss 1 0.450436972716726 1 0.760676622390747 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106884134 chrX:106884134 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_1136 0 0 1 0 2 PRPS1 chrX:106884132 3'AG 106884132 Downstream 3bp
chrX 106884134 106884134 1 + C A LUAD 106884134 + 106884114 106884154 41 TTCCTCCCCTCCATTTAGAGCCGGGCGCCAATCTCAGCCAA TTCCTCCCCTCCATTTAGAGACGGGCGCCAATCTCAGCCAA Direct Loss 1 0.450436972716726 1 0.760676622390747 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106884134 chrX:106884134 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_1136 0 0 1 0 2 PRPS1 chrX:106884230 5'GT 106884230 Upstream 97bp
chr7 101188641 101188641 1 + C A LUAD 101188641 + 101188621 101188661 41 CTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAGAT CTCCTGGGGCCTCCAGGGCCACGTGGGCTTCCTGGAGAGAT Direct Loss 1 0.214086803965294 1 0.360681295394897 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188641 chr7:101188641 synonymous SNV . 0 21 hm5C_associated_SNPs_1137 0 0 0 0 1 COL26A1 chr7:101188619 3'AG 101188619 Downstream 23bp
chr15 40269028 40269028 1 + C G LUAD 40269028 + 40269008 40269048 41 GAGGACGAGCACGGTGGCGTCTTCTCCCAGTCCTTCCTGTA GAGGACGAGCACGGTGGCGTGTTCTCCCAGTCCTTCCTGTA Direct Loss 1 0.261288466530368 1 0.0507609844207764 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40269028 chr15:40269028 synonymous SNV . 0 21 hm5C_associated_SNPs_1138 0 0 1 0 1 EIF2AK4 chr15:40269045 5'GT 40269045 Upstream 18bp
chr7 142460282 142460282 1 + C A LUAD 142460282 + 142460262 142460302 41 TCTCTTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGC TCTCTTCCTGATCCTCACAGACGACTACCCAGACGAGCTGC Direct Loss 1 0.115669094765802 1 0.229894608259201 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460282 chr7:142460282 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_1140 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 1bp
chr5 37026368 37026368 1 + C G LUAD 37026368 + 37026348 37026388 41 ATTCCAGAAACTCTGGTTTACTCCAACTCCACACAATGACA ATTCCAGAAACTCTGGTTTAGTCCAACTCCACACAATGACA Direct Loss 1 0.40767413889817 1 0.914849877357483 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NIPBL ENSG00000164190 CDS Human protein_coding chr5:37026368 chr5:37026368 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1141 0 0 1 0 2 NIPBL chr5:37026331 3'AG 37026331 Downstream 38bp
chr5 37026368 37026368 1 + C G LUAD 37026368 + 37026348 37026388 41 ATTCCAGAAACTCTGGTTTACTCCAACTCCACACAATGACA ATTCCAGAAACTCTGGTTTAGTCCAACTCCACACAATGACA Direct Loss 1 0.40767413889817 1 0.914849877357483 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NIPBL ENSG00000164190 CDS Human protein_coding chr5:37026368 chr5:37026368 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1141 0 0 1 0 2 NIPBL chr5:37026429 5'GT 37026429 Upstream 62bp
chr7 94057032 94057032 1 + C A LUAD 94057032 + 94057012 94057052 41 GAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCACCTTCT GAGACTTCTACAGGGCTGACAAGCCTCGCTCAGCACCTTCT Direct Loss 1 0.125662140194036 1 0.296938866376877 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057032 chr7:94057032 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1142 0 0 0 0 1 COL1A2 chr7:94056939 3'AG 94056939 Downstream 94bp
chr7 142459828 142459828 1 + C A LUAD 142459828 + 142459808 142459848 41 GCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCT GCCCACCGCCCCTCCAGCCAATGGCACGAAGTGCCTCATCT Direct Loss 1 0.686701601861391 1 0.329339921474457 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459828 chr7:142459828 nonsynonymous SNV 0.001 3 21 hm5C_associated_SNPs_1143 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 51bp
chr15 65152098 65152098 1 + C T LUAD 65152098 + 65152078 65152118 41 CCATCTTGCCCACAGGTCAGCGACATCAAATTCCAGGCACC CCATCTTGCCCACAGGTCAGTGACATCAAATTCCAGGCACC Direct Loss 1 0.459215342441005 1 0.0892495512962341 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHO2 ENSG00000241839;ENSG00000249240 CDS Human other chr15:65152098 chr15:65152098 synonymous SNV . 0 21 hm5C_associated_SNPs_1144 0 0 0 0 2 PLEKHO2 chr15:65152093 3'AG 65152093 Downstream 6bp
chr15 65152098 65152098 1 + C T LUAD 65152098 + 65152078 65152118 41 CCATCTTGCCCACAGGTCAGCGACATCAAATTCCAGGCACC CCATCTTGCCCACAGGTCAGTGACATCAAATTCCAGGCACC Direct Loss 1 0.459215342441005 1 0.0892495512962341 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHO2 ENSG00000241839;ENSG00000249240 CDS Human other chr15:65152098 chr15:65152098 synonymous SNV . 0 21 hm5C_associated_SNPs_1144 0 0 0 0 2 PLEKHO2 chr15:65152197 5'GT 65152197 Upstream 100bp
chr19 3533341 3533341 1 + C T LUAD 3533341 + 3533321 3533361 41 GATCCTTGTCTGGAAGTACCCCTCCCTGACCCAGGTGGCCA GATCCTTGTCTGGAAGTACCTCTCCCTGACCCAGGTGGCCA Direct Loss 1 0.105285978425339 1 0.174369603395462 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3533341 chr19:3533341 nonsynonymous SNV 0.976 4 21 hm5C_associated_SNPs_1145 0 0 1 0 2 FZR1 chr19:3533292 3'AG 3533292 Downstream 50bp
chr19 3533341 3533341 1 + C T LUAD 3533341 + 3533321 3533361 41 GATCCTTGTCTGGAAGTACCCCTCCCTGACCCAGGTGGCCA GATCCTTGTCTGGAAGTACCTCTCCCTGACCCAGGTGGCCA Direct Loss 1 0.105285978425339 1 0.174369603395462 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3533341 chr19:3533341 nonsynonymous SNV 0.976 4 21 hm5C_associated_SNPs_1145 0 0 1 0 2 FZR1 chr19:3533396 5'GT 3533396 Upstream 56bp
chr11 65482191 65482191 1 + C G LUAD 65482191 + 65482171 65482211 41 GCCTCAAGTACGGCCGTAGTCTCAAGTGTCTTCAGCGTCAT GCCTCAAGTACGGCCGTAGTGTCAAGTGTCTTCAGCGTCAT Direct Loss 1 0.915453186314421 1 0.720902383327484 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KAT5 ENSG00000172977 CDS Human protein_coding chr11:65482191 chr11:65482191 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_1147 0 0 1 0 1 KAT5 chr11:65482214 5'GT 65482214 Upstream 24bp
chr18 19209061 19209061 1 + C T LUAD 19209061 + 19209041 19209081 41 GAAGAGGAAGAGGAAGAGGACGTGGCCGTGGCAGAGGAAGA GAAGAGGAAGAGGAAGAGGATGTGGCCGTGGCAGAGGAAGA Direct Loss 1 0.613239235739054 1 0.40554404258728 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRPD1 ENSG00000167088 CDS Human protein_coding chr18:19209061 chr18:19209061 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1149 0 0 1 0 1 SNRPD1 chr18:19209023 3'AG 19209023 Downstream 39bp
chr3 44815917 44815917 1 + C T LUAD 44815917 + 44815897 44815937 41 CAGCGTGACAAATGGTCAGTCTAACCAACCAAGGTAAGGAG CAGCGTGACAAATGGTCAGTTTAACCAACCAAGGTAAGGAG Direct Loss 1 0.128672700722178 1 0.0905659794807434 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF15 ENSG00000163808 CDS Human protein_coding chr3:44815917 chr3:44815917 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_1150 0 0 1 0 2 KIF15 chr3:44815887 3'AG 44815887 Downstream 31bp
chr3 44815917 44815917 1 + C T LUAD 44815917 + 44815897 44815937 41 CAGCGTGACAAATGGTCAGTCTAACCAACCAAGGTAAGGAG CAGCGTGACAAATGGTCAGTTTAACCAACCAAGGTAAGGAG Direct Loss 1 0.128672700722178 1 0.0905659794807434 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF15 ENSG00000163808 CDS Human protein_coding chr3:44815917 chr3:44815917 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_1150 0 0 1 0 2 KIF15 chr3:44815929 5'GT 44815929 Upstream 13bp
chr4 7691293 7691293 1 + C T LUAD 7691293 + 7691273 7691313 41 GTGCACACCAAGGACACCGCCCCAGGCCTCATCATGGGTGC GTGCACACCAAGGACACCGCTCCAGGCCTCATCATGGGTGC Direct Loss 1 0.156844240503543 1 0.492003351449966 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SORCS2 ENSG00000184985 CDS Human protein_coding chr4:7691293 chr4:7691293 synonymous SNV . 0 21 hm5C_associated_SNPs_1151 0 0 0 0 2 SORCS2 chr4:7691213 3'AG 7691213 Downstream 81bp
chr4 7691293 7691293 1 + C T LUAD 7691293 + 7691273 7691313 41 GTGCACACCAAGGACACCGCCCCAGGCCTCATCATGGGTGC GTGCACACCAAGGACACCGCTCCAGGCCTCATCATGGGTGC Direct Loss 1 0.156844240503543 1 0.492003351449966 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SORCS2 ENSG00000184985 CDS Human protein_coding chr4:7691293 chr4:7691293 synonymous SNV . 0 21 hm5C_associated_SNPs_1151 0 0 0 0 2 SORCS2 chr4:7691315 5'GT 7691315 Upstream 23bp
chr7 142459867 142459867 1 + C A LUAD 142459867 + 142459847 142459887 41 CTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGG CTCTGGCTGGGGCAACACTGAGAGCTCTGGCGGTGAGTGGG Direct Loss 1 0.409708595062913 1 0.54682445526123 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459867 chr7:142459867 nonsynonymous SNV 0.023 1 21 hm5C_associated_SNPs_1152 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 12bp
chr6 160212138 160212138 1 + C T LUAD 160212138 + 160212118 160212158 41 GGCTGGCGGACGGTGTTTCCCTCCCGTGAGTTCTGGCACAG GGCTGGCGGACGGTGTTTCCTTCCCGTGAGTTCTGGCACAG Direct Loss 1 0.872480408723517 1 0.106863915920258 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160212138 chr6:160212138 synonymous SNV . 0 21 hm5C_associated_SNPs_1153 0 0 1 0 1 MRPL18 chr6:160212158 5'GT 160212158 Upstream 21bp
chr7 142458452 142458452 1 + C A LUAD 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGCTACAAATGTGAGGAGAATTCTGTCCC Direct Loss 1 0.429542432811249 1 0.328921914100647 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458452 nonsynonymous SNV 0.033 2 21 hm5C_associated_SNPs_1155 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 47bp
chr10 7785208 7785208 1 + C G LUAD 7785208 + 7785188 7785228 41 AAAAATCCTCAACCTGGTTTCTGACCCAGAATCAGGTAAAA AAAAATCCTCAACCTGGTTTGTGACCCAGAATCAGGTAAAA Direct Loss 1 0.130412450562733 1 0.0821137726306915 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7785208 chr10:7785208 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1156 0 0 1 0 2 ITIH2 chr10:7785109 3'AG 7785109 Downstream 100bp
chr10 7785208 7785208 1 + C G LUAD 7785208 + 7785188 7785228 41 AAAAATCCTCAACCTGGTTTCTGACCCAGAATCAGGTAAAA AAAAATCCTCAACCTGGTTTGTGACCCAGAATCAGGTAAAA Direct Loss 1 0.130412450562733 1 0.0821137726306915 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7785208 chr10:7785208 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1156 0 0 1 0 2 ITIH2 chr10:7785222 5'GT 7785222 Upstream 15bp
chr2 220503474 220503474 1 + C A LUAD 220503474 + 220503454 220503494 41 GACCTCTCCCGATAAGCGCTCGTGGTTCATCCCACCCCTGG GACCTCTCCCGATAAGCGCTAGTGGTTCATCCCACCCCTGG Direct Loss 1 0.521666566153612 1 0.518852591514587 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220503474 chr2:220503474 stopgain 0.943 1 21 hm5C_associated_SNPs_1157 0 0 0 0 1 SLC4A3 chr2:220503425 3'AG 220503425 Downstream 50bp
chr7 66773926 66773926 1 + C T LUAD 66773926 + 66773906 66773946 41 ATACATCCTTTTGTAGGACTCGGGGGACTATCCTCTGACAG ATACATCCTTTTGTAGGACTTGGGGGACTATCCTCTGACAG Direct Loss 1 0.883736743603282 1 0.922821462154388 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control STAG3L4 ENSG00000106610 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:66773926 chr7:66773926 . . 0 21 hm5C_associated_SNPs_1158 0 0 1 0 1 STAG3L4 chr7:66773922 3'AG 66773922 Downstream 5bp
chr7 142459714 142459714 1 + C G LUAD 142459714 + 142459694 142459734 41 AGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC AGCCAAGATCATCCGCCACCGCCAATACGACAGGAAGACTC Direct Loss 1 0.494771956785118 1 0.458604663610458 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459714 chr7:142459714 nonsynonymous SNV 0.015 5 21 hm5C_associated_SNPs_1159 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 90bp
chr12 6979504 6979504 1 + C A LUAD 6979504 + 6979484 6979524 41 CTTCCTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGG CTTCCTTGTGGGTGGTGCTTACCTCAAGCCCGAATTCGTGG Direct Loss 1 0.133819584445875 1 0.0371414124965668 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979504 chr12:6979504 nonsynonymous SNV 0.977 4 21 hm5C_associated_SNPs_1160 0 0 1 0 1 TPI1 chr12:6979429 3'AG 6979429 Downstream 76bp
chr2 32673994 32673994 1 + C T LUAD 32673994 + 32673974 32674014 41 TGATTTATCAGATGTCCTTTCAGGTAGTGATTTCTTTTATT TGATTTATCAGATGTCCTTTTAGGTAGTGATTTCTTTTATT Direct Loss 1 0.174036463012803 1 0.316508710384369 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673994 chr2:32673994 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_1161 0 0 1 0 1 BIRC6 chr2:32673996 5'GT 32673996 Upstream 3bp
chr7 5644976 5644976 1 + C A LUAD 5644976 + 5644956 5644996 41 GGCGACACTCCTGTGGACTTCTTCTTCGAGTTCTGCGACTA GGCGACACTCCTGTGGACTTATTCTTCGAGTTCTGCGACTA Direct Loss 1 0.245142531795609 1 0.100330799818039 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5644976 chr7:5644976 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1162 0 0 1 0 1 FSCN1 chr7:5644903 3'AG 5644903 Downstream 74bp
chr5 169020446 169020446 1 + C G LUAD 169020446 + 169020426 169020466 41 TCATCAGAAGGAACTCCTCTCTTGTAAATCAGAGGAACTGC TCATCAGAAGGAACTCCTCTGTTGTAAATCAGAGGAACTGC Direct Loss 1 0.418886957214413 1 0.0644985139369965 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169020446 chr5:169020446 nonsynonymous SNV 0.327 1 21 hm5C_associated_SNPs_1163 0 0 1 0 1 SPDL1 chr5:169020358 3'AG 169020358 Downstream 89bp
chr10 89505590 89505590 1 + C T LUAD 89505590 + 89505570 89505610 41 TGTTGCCACCCTGTAACAGGCACAATGAGTTTGACTTCATC TGTTGCCACCCTGTAACAGGTACAATGAGTTTGACTTCATC Direct Loss 1 0.547886038622802 1 0.166351348161697 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89505590 chr10:89505590 nonsynonymous SNV 0.995 3 21 hm5C_associated_SNPs_1165 0 0 1 0 1 PAPSS2 chr10:89505589 3'AG 89505589 Downstream 2bp
chr7 142458527 142458527 1 + C A LUAD 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGCTCCCTCATCAAAGAACAGTGGGTGGTATCAGC Direct Loss 1 0.419509742895606 1 0.829416751861572 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458527 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_1166 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 48bp
chr7 142458527 142458527 1 + C A LUAD 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGCTCCCTCATCAAAGAACAGTGGGTGGTATCAGC Direct Loss 1 0.419509742895606 1 0.829416751861572 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458527 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_1166 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 39bp
chr7 142460308 142460308 1 + C A LUAD 142460308 + 142460288 142460328 41 ACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGC ACCCAGACGAGCTGCAGTGCATGGATGCTCCTGTGCTGAGC Direct Loss 1 0.923274000101584 1 0.700285673141479 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460308 chr7:142460308 nonsynonymous SNV 0.028 5 21 hm5C_associated_SNPs_1169 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 27bp
chr8 104066182 104066182 1 + C T LUAD 104066182 + 104066162 104066202 41 TTGTTCTTGATTCAGAGTATCTCGTCACATTACTGGTAGTA TTGTTCTTGATTCAGAGTATTTCGTCACATTACTGGTAGTA Direct Loss 1 0.412321409398684 1 0.0338768064975739 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V1C1 ENSG00000155097 CDS Human protein_coding chr8:104066182 chr8:104066182 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_1171 0 0 1 0 2 ATP6V1C1 chr8:104066112 3'AG 104066112 Downstream 71bp
chr8 104066182 104066182 1 + C T LUAD 104066182 + 104066162 104066202 41 TTGTTCTTGATTCAGAGTATCTCGTCACATTACTGGTAGTA TTGTTCTTGATTCAGAGTATTTCGTCACATTACTGGTAGTA Direct Loss 1 0.412321409398684 1 0.0338768064975739 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V1C1 ENSG00000155097 CDS Human protein_coding chr8:104066182 chr8:104066182 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_1171 0 0 1 0 2 ATP6V1C1 chr8:104066210 5'GT 104066210 Upstream 29bp
chr7 23221741 23221741 1 + C T LUAD 23221741 + 23221721 23221761 41 TCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTGG TCTTCCTTCAAGGCCGGTGCTGCTTTGGAGATCGGTGCTGG Direct Loss 1 0.588241269994989 1 0.0727488398551941 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221741 chr7:23221741 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1172 0 0 1 3 1 NUPL2 chr7:23221825 5'GT 23221825 Upstream 85bp
chr11 61106796 61106796 1 + C A LUAD 61106796 + 61106776 61106816 41 GGCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCGGT GGCCTGGCCCGGGAGCAGGCACGGGCTGAAGGCATCCCGGT Direct Loss 1 0.660285733617166 1 0.709807872772217 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61106796 chr11:61106796 synonymous SNV . 0 21 hm5C_associated_SNPs_1175 0 0 1 0 1 TKFC chr11:61106726 3'AG 61106726 Downstream 71bp
chr10 31812931 31812931 1 + C T LUAD 31812931 + 31812911 31812951 41 GAATGACTCTGATTCTACACCGCCCAAAAAGAAAATGCGGA GAATGACTCTGATTCTACACTGCCCAAAAAGAAAATGCGGA Direct Loss 1 0.253635351352222 1 0.407377630472183 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZEB1 ENSG00000148516 CDS Human protein_coding chr10:31812931 chr10:31812931 nonsynonymous SNV 0.992 1 21 hm5C_associated_SNPs_1176 0 0 0 0 1 ZEB1 chr10:31812861 3'AG 31812861 Downstream 71bp
chrX 107909782 107909782 1 + C A LUAD 107909782 + 107909762 107909802 41 GCGAAAAAGGCAAACCCGGTCAAGATGGTATTCCTGGACCA GCGAAAAAGGCAAACCCGGTAAAGATGGTATTCCTGGACCA Direct Loss 1 0.750647366373685 1 0.733027338981628 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107909782 chrX:107909782 nonsynonymous SNV 0.993 2 21 hm5C_associated_SNPs_1177 0 0 1 0 2 COL4A5 chrX:107909726 3'AG 107909726 Downstream 57bp
chrX 107909782 107909782 1 + C A LUAD 107909782 + 107909762 107909802 41 GCGAAAAAGGCAAACCCGGTCAAGATGGTATTCCTGGACCA GCGAAAAAGGCAAACCCGGTAAAGATGGTATTCCTGGACCA Direct Loss 1 0.750647366373685 1 0.733027338981628 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107909782 chrX:107909782 nonsynonymous SNV 0.993 2 21 hm5C_associated_SNPs_1177 0 0 1 0 2 COL4A5 chrX:107909824 5'GT 107909824 Upstream 43bp
chr18 12725465 12725465 1 + C T LUAD 12725465 + 12725445 12725485 41 ACCCCACAGTATCTGCCTCACGGTGGAAAATACCAAGTTCT ACCCCACAGTATCTGCCTCATGGTGGAAAATACCAAGTTCT Direct Loss 1 0.842433085887486 1 0.305108428001404 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMG2 ENSG00000128789 CDS Human protein_coding chr18:12725465 chr18:12725465 nonsynonymous SNV 0.055 1 21 hm5C_associated_SNPs_1178 0 0 1 0 1 PSMG2 chr18:12725438 3'AG 12725438 Downstream 28bp
chr7 142459849 142459849 1 + C A LUAD 142459849 + 142459829 142459869 41 TGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACACTGCGA TGGCACGAAGTGCCTCATCTATGGCTGGGGCAACACTGCGA Direct Loss 1 0.830390077517541 1 0.312660098075867 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459849 chr7:142459849 nonsynonymous SNV 0.146 5 21 hm5C_associated_SNPs_1180 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 30bp
chr11 66834276 66834276 1 + C T LUAD 66834276 + 66834256 66834296 41 AGCGTCCTGCTGCTTTGCTTCGATGTCACCAGCCCGAACAG AGCGTCCTGCTGCTTTGCTTTGATGTCACCAGCCCGAACAG Direct Loss 1 0.509391340120755 1 0.658409714698792 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RHOD ENSG00000173156 CDS Human protein_coding chr11:66834276 chr11:66834276 synonymous SNV . 0 21 hm5C_associated_SNPs_1181 0 0 0 0 2 RHOD chr11:66834209 3'AG 66834209 Downstream 68bp
chr11 66834276 66834276 1 + C T LUAD 66834276 + 66834256 66834296 41 AGCGTCCTGCTGCTTTGCTTCGATGTCACCAGCCCGAACAG AGCGTCCTGCTGCTTTGCTTTGATGTCACCAGCCCGAACAG Direct Loss 1 0.509391340120755 1 0.658409714698792 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RHOD ENSG00000173156 CDS Human protein_coding chr11:66834276 chr11:66834276 synonymous SNV . 0 21 hm5C_associated_SNPs_1181 0 0 0 0 2 RHOD chr11:66834318 5'GT 66834318 Upstream 43bp
chr10 75526854 75526854 1 + C G LUAD 75526854 + 75526834 75526874 41 TCTTTCTATTCCATACATCCCTGCCCATTGCAGAGGCCCCA TCTTTCTATTCCATACATCCGTGCCCATTGCAGAGGCCCCA Direct Loss 1 0.206175213997306 1 0.0213345587253571 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SEC24C ENSG00000176986 CDS Human protein_coding chr10:75526854 chr10:75526854 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_1183 0 0 1 0 2 SEC24C chr10:75526812 3'AG 75526812 Downstream 43bp
chr10 75526854 75526854 1 + C G LUAD 75526854 + 75526834 75526874 41 TCTTTCTATTCCATACATCCCTGCCCATTGCAGAGGCCCCA TCTTTCTATTCCATACATCCGTGCCCATTGCAGAGGCCCCA Direct Loss 1 0.206175213997306 1 0.0213345587253571 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SEC24C ENSG00000176986 CDS Human protein_coding chr10:75526854 chr10:75526854 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_1183 0 0 1 0 2 SEC24C chr10:75526928 5'GT 75526928 Upstream 75bp
chrX 107838784 107838784 1 + C T LUAD 107838784 + 107838764 107838804 41 CTGCATTGGAACTGGTATTTCAGGGCCTCCAGGTCAACCTG CTGCATTGGAACTGGTATTTTAGGGCCTCCAGGTCAACCTG Direct Loss 1 0.82695164991786 1 0.580421090126038 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107838784 chrX:107838784 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1184 0 0 1 0 2 COL4A5 chrX:107838739 3'AG 107838739 Downstream 46bp
chrX 107838784 107838784 1 + C T LUAD 107838784 + 107838764 107838804 41 CTGCATTGGAACTGGTATTTCAGGGCCTCCAGGTCAACCTG CTGCATTGGAACTGGTATTTTAGGGCCTCCAGGTCAACCTG Direct Loss 1 0.82695164991786 1 0.580421090126038 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107838784 chrX:107838784 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1184 0 0 1 0 2 COL4A5 chrX:107838831 5'GT 107838831 Upstream 48bp
chr7 142458515 142458515 1 + C T LUAD 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGTGGTGGTTCCCTCATCAACGAACAGTG Direct Loss 1 0.272467839292821 1 0.0794259905815125 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458515 synonymous SNV . 0 21 hm5C_associated_SNPs_1186 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 36bp
chr7 142458515 142458515 1 + C T LUAD 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGTGGTGGTTCCCTCATCAACGAACAGTG Direct Loss 1 0.272467839292821 1 0.0794259905815125 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458515 synonymous SNV . 0 21 hm5C_associated_SNPs_1186 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 51bp
chr16 3117519 3117519 1 + C T LUAD 3117519 + 3117499 3117539 41 GACCCTGGAGGGACAAGGATCCGGCCCTTTGGTGCCAACTC GACCCTGGAGGGACAAGGATTCGGCCCTTTGGTGCCAACTC Direct Loss 1 0.507443132753006 1 0.727354049682617 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IL32 ENSG00000008517 CDS Human protein_coding chr16:3117519 chr16:3117519 nonsynonymous SNV 0.016 1 21 hm5C_associated_SNPs_1187 0 0 1 0 1 IL32 chr16:3117614 5'GT 3117614 Upstream 96bp
chr16 87730243 87730243 1 + C A LUSC 87730243 + 87730223 87730263 41 TCAACATCGGAGTCGCCATTCTGTTTATTAACTTTTTCATC TCAACATCGGAGTCGCCATTATGTTTATTAACTTTTTCATC Direct Loss 1 0.14150925181937 1 0.139885574579239 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control JPH3 ENSG00000154118 CDS Human protein_coding chr16:87730243 chr16:87730243 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1189 0 0 1 0 1 JPH3 chr16:87730186 3'AG 87730186 Downstream 58bp
chr17 29560175 29560175 1 + C T LUSC 29560175 + 29560155 29560195 41 TGGTCACAATGATGGGTGATCAAGGAGAACTCCCTATAGCG TGGTCACAATGATGGGTGATTAAGGAGAACTCCCTATAGCG Direct Loss 1 0.476116825392752 1 0.788607716560364 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29560175 chr17:29560175 stopgain 0.999 1 21 hm5C_associated_SNPs_1190 0 0 1 0 1 NF1 chr17:29560231 5'GT 29560231 Upstream 57bp
chr19 7676663 7676663 1 + C T LUSC 7676663 + 7676643 7676683 41 GGAGACCCTGTGCTCCTCCGCTCTGTGAGCTCGGACAGCCT GGAGACCCTGTGCTCCTCCGTTCTGTGAGCTCGGACAGCCT Direct Loss 1 0.296255774385825 1 0.0430215895175934 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7676663 chr19:7676663 synonymous SNV . 0 21 hm5C_associated_SNPs_1191 0 0 1 0 1 CAMSAP3 chr19:7676573 3'AG 7676573 Downstream 91bp
chr13 111111217 111111217 1 + C G LUSC 111111217 + 111111197 111111237 41 CGCAGGCATCAACGGGGAGCCGGGGAGGAAAGGGGACAGAG CGCAGGCATCAACGGGGAGCGGGGGAGGAAAGGGGACAGAG Direct Loss 1 0.707160203594384 1 0.902242720127106 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111217 chr13:111111217 nonsynonymous SNV 0.225 1 21 hm5C_associated_SNPs_1192 0 0 0 0 2 COL4A2 chr13:111111118 3'AG 111111118 Downstream 100bp
chr13 111111217 111111217 1 + C G LUSC 111111217 + 111111197 111111237 41 CGCAGGCATCAACGGGGAGCCGGGGAGGAAAGGGGACAGAG CGCAGGCATCAACGGGGAGCGGGGGAGGAAAGGGGACAGAG Direct Loss 1 0.707160203594384 1 0.902242720127106 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111217 chr13:111111217 nonsynonymous SNV 0.225 1 21 hm5C_associated_SNPs_1192 0 0 0 0 2 COL4A2 chr13:111111281 5'GT 111111281 Upstream 65bp
chr10 17277176 17277176 1 + C A LUSC 17277176 + 17277156 17277196 41 CACCCCCTGCAGAATGAGTCCCTGGAACGCCAGATGCGTGA CACCCCCTGCAGAATGAGTCACTGGAACGCCAGATGCGTGA Direct Loss 1 0.136884737937788 1 0.104858607053757 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277176 chr10:17277176 synonymous SNV . 0 21 hm5C_associated_SNPs_1194 0 0 1 0 1 VIM chr10:17277168 3'AG 17277168 Downstream 9bp
chr3 148562331 148562331 1 + C A LUSC 148562331 + 148562311 148562351 41 ACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGAT ACAAGTTAGACTTTTATGTCATGCCTGTGCTCAATATTGAT Direct Loss 1 0.230950670292786 1 0.0363459885120392 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562331 chr3:148562331 nonsynonymous SNV 0.993 2 21 hm5C_associated_SNPs_1195 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 67bp
chr3 148562331 148562331 1 + C A LUSC 148562331 + 148562311 148562351 41 ACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGAT ACAAGTTAGACTTTTATGTCATGCCTGTGCTCAATATTGAT Direct Loss 1 0.230950670292786 1 0.0363459885120392 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562331 chr3:148562331 nonsynonymous SNV 0.993 2 21 hm5C_associated_SNPs_1195 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 45bp
chr11 75508290 75508290 1 + C T LUSC 75508290 + 75508270 75508310 41 CATCATCGTGGTCGGGGGTGCGGCTGAGTCTCTGAGCTCCA CATCATCGTGGTCGGGGGTGTGGCTGAGTCTCTGAGCTCCA Direct Loss 1 0.511026139608812 1 0.276807725429535 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75508290 chr11:75508290 nonsynonymous SNV 0.989 3 21 hm5C_associated_SNPs_1196 0 0 1 0 2 DGAT2 chr11:75508203 3'AG 75508203 Downstream 88bp
chr11 75508290 75508290 1 + C T LUSC 75508290 + 75508270 75508310 41 CATCATCGTGGTCGGGGGTGCGGCTGAGTCTCTGAGCTCCA CATCATCGTGGTCGGGGGTGTGGCTGAGTCTCTGAGCTCCA Direct Loss 1 0.511026139608812 1 0.276807725429535 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75508290 chr11:75508290 nonsynonymous SNV 0.989 3 21 hm5C_associated_SNPs_1196 0 0 1 0 2 DGAT2 chr11:75508377 5'GT 75508377 Upstream 88bp
chr16 89645265 89645265 1 + C T LUSC 89645265 + 89645245 89645285 41 CTGGGTTACGGCCTCCACAGCCAGCCCAAAAGTGGCTTCTG CTGGGTTACGGCCTCCACAGTCAGCCCAAAAGTGGCTTCTG Direct Loss 1 0.0849286074966717 1 0.862747550010681 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89645265 chr16:89645265 nonsynonymous SNV 0.014 0 21 hm5C_associated_SNPs_1197 0 0 0 0 1 CPNE7 chr16:89645265 3'AG 89645265 Downstream 1bp
chr7 897491 897491 1 + C A LUSC 897491 + 897471 897511 41 TGGTGAGCAGCTCCTGCCCACAGTCGAGCACCTCCAGCTGG TGGTGAGCAGCTCCTGCCCAAAGTCGAGCACCTCCAGCTGG Direct Loss 1 0.271140899219756 1 0.476319074630737 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SUN1 ENSG00000164828 CDS Human protein_coding chr7:897491 chr7:897491 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_1198 0 0 1 0 1 SUN1 chr7:897465 3'AG 897465 Downstream 27bp
chr9 123917066 123917066 1 + C G LUSC 123917066 + 123917046 123917086 41 TAGAAAAATCACTCAAACATCATGAAGATATTGTAGATGAA TAGAAAAATCACTCAAACATGATGAAGATATTGTAGATGAA Direct Loss 1 0.318510436104774 1 0.0988101065158844 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNTRL ENSG00000119397 CDS Human protein_coding chr9:123917066 chr9:123917066 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_1199 0 0 1 0 1 CNTRL chr9:123916999 3'AG 123916999 Downstream 68bp
chr14 94568211 94568211 1 + C A LUSC 94568211 + 94568191 94568231 41 CAGTGCCATGGGCTTCACCTCAGTAGGAATCGCCGCATCCT CAGTGCCATGGGCTTCACCTAAGTAGGAATCGCCGCATCCT Direct Loss 1 0.806527836321778 1 0.585052311420441 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFI27L1 ENSG00000165948 CDS Human protein_coding chr14:94568211 chr14:94568211 stopgain 0.000 0 21 hm5C_associated_SNPs_1200 0 0 1 0 1 IFI27L1 chr14:94568160 3'AG 94568160 Downstream 52bp
chr20 34458925 34458925 1 + C G LUSC 34458925 + 34458905 34458945 41 AAACACTGACAAAGACTTATCGAGGAGACGTTCCTCCAGGC AAACACTGACAAAGACTTATGGAGGAGACGTTCCTCCAGGC Direct Loss 1 0.77490721416594 1 0.930524468421936 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PHF20 ENSG00000025293 CDS Human protein_coding chr20:34458925 chr20:34458925 nonsynonymous SNV 0.901 2 21 hm5C_associated_SNPs_1201 0 0 1 0 1 PHF20 chr20:34458877 3'AG 34458877 Downstream 49bp
chr22 26400695 26400695 1 + C A LUSC 26400695 + 26400675 26400715 41 TTATTCTAGGGATAACGTCTCCATCCTCAGCTCCCAGCCAG TTATTCTAGGGATAACGTCTACATCCTCAGCTCCCAGCCAG Direct Loss 1 0.0322223816903056 1 0.207868248224258 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26400695 chr22:26400695 nonsynonymous SNV 0.887 4 21 hm5C_associated_SNPs_1202 0 0 0 0 1 MYO18B chr22:26400684 3'AG 26400684 Downstream 12bp
chr4 502758 502758 1 + C T LUSC 502758 + 502738 502778 41 TCTGCGTTTGAAAGGAAACCCGGTGAGAATTTAGGAATGTT TCTGCGTTTGAAAGGAAACCTGGTGAGAATTTAGGAATGTT Direct Loss 1 0.219810154583354 1 0.294984221458435 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIGG ENSG00000174227 CDS Human protein_coding chr4:502758 chr4:502758 synonymous SNV . 0 21 hm5C_associated_SNPs_1203 0 0 1 0 1 PIGG chr4:502759 5'GT 502759 Upstream 2bp
chr2 48033370 48033370 1 + C T LUSC 48033370 + 48033350 48033390 41 TACTGCAACATTTGATGGGACGGCAATAGCAAATGCAGTTG TACTGCAACATTTGATGGGATGGCAATAGCAAATGCAGTTG Direct Loss 1 0.673797968722271 1 0.156810432672501 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MSH6 ENSG00000116062 CDS Human protein_coding chr2:48033370 chr2:48033370 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_1204 4 0 1 0 1 MSH6 chr2:48033343 3'AG 48033343 Downstream 28bp
chr1 28159279 28159279 1 + C T LUSC 28159279 + 28159259 28159299 41 TTTTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGA TTTTTCAGGGCAGGTAAGCCTCCTCCCGGTTTACATCTGGA Direct Loss 1 0.0854951816517655 1 0.181728780269623 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159279 chr1:28159279 synonymous SNV . 0 21 hm5C_associated_SNPs_1205 0 0 1 0 2 PPP1R8 chr1:28159267 3'AG 28159267 Downstream 13bp
chr1 28159279 28159279 1 + C T LUSC 28159279 + 28159259 28159299 41 TTTTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGA TTTTTCAGGGCAGGTAAGCCTCCTCCCGGTTTACATCTGGA Direct Loss 1 0.0854951816517655 1 0.181728780269623 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159279 chr1:28159279 synonymous SNV . 0 21 hm5C_associated_SNPs_1205 0 0 1 0 2 PPP1R8 chr1:28159327 5'GT 28159327 Upstream 49bp
chr1 183091288 183091288 1 + C T LUSC 183091288 + 183091268 183091308 41 TTCAACTGCAGGCACCTCCTCCGATTGCCAACCCTGTCCGT TTCAACTGCAGGCACCTCCTTCGATTGCCAACCCTGTCCGT Direct Loss 1 0.201766582879247 1 0.118303418159485 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183091288 chr1:183091288 nonsynonymous SNV 0.940 0 21 hm5C_associated_SNPs_1206 0 0 1 0 2 LAMC1 chr1:183091198 3'AG 183091198 Downstream 91bp
chr1 183091288 183091288 1 + C T LUSC 183091288 + 183091268 183091308 41 TTCAACTGCAGGCACCTCCTCCGATTGCCAACCCTGTCCGT TTCAACTGCAGGCACCTCCTTCGATTGCCAACCCTGTCCGT Direct Loss 1 0.201766582879247 1 0.118303418159485 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183091288 chr1:183091288 nonsynonymous SNV 0.940 0 21 hm5C_associated_SNPs_1206 0 0 1 0 2 LAMC1 chr1:183091386 5'GT 183091386 Upstream 99bp
chr1 28159278 28159278 1 + C T LUSC 28159278 + 28159258 28159298 41 ATTTTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGG ATTTTTCAGGGCAGGTAAGCTCCCTCCCGGTTTACATCTGG Direct Loss 1 0.214322534424859 1 0.2221959233284 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159278 chr1:28159278 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1208 0 0 1 0 2 PPP1R8 chr1:28159267 3'AG 28159267 Downstream 12bp
chr1 28159278 28159278 1 + C T LUSC 28159278 + 28159258 28159298 41 ATTTTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGG ATTTTTCAGGGCAGGTAAGCTCCCTCCCGGTTTACATCTGG Direct Loss 1 0.214322534424859 1 0.2221959233284 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159278 chr1:28159278 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1208 0 0 1 0 2 PPP1R8 chr1:28159327 5'GT 28159327 Upstream 50bp
chr7 128486405 128486405 1 + C T LUSC 128486405 + 128486385 128486425 41 AGGTCGCTGTGCCCAAGAGCCCCTTCCGAGTGGGCGTGACC AGGTCGCTGTGCCCAAGAGCTCCTTCCGAGTGGGCGTGACC Direct Loss 1 0.0241027507608868 1 0.0312554240226746 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486405 chr7:128486405 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_1209 0 0 1 0 1 FLNC chr7:128486355 3'AG 128486355 Downstream 51bp
chr22 29695312 29695312 1 + C T LUSC 29695312 + 29695292 29695332 41 GCTTCCTCCCGCCACCCTTTCCGCCCCCGGGTAGGTGCAGG GCTTCCTCCCGCCACCCTTTTCGCCCCCGGGTAGGTGCAGG Direct Loss 1 0.240325161264868 1 0.419913530349731 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695312 chr22:29695312 nonsynonymous SNV 0.915 3 21 hm5C_associated_SNPs_1210 0 0 1 0 2 EWSR1 chr22:29695224 3'AG 29695224 Downstream 89bp
chr22 29695312 29695312 1 + C T LUSC 29695312 + 29695292 29695332 41 GCTTCCTCCCGCCACCCTTTCCGCCCCCGGGTAGGTGCAGG GCTTCCTCCCGCCACCCTTTTCGCCCCCGGGTAGGTGCAGG Direct Loss 1 0.240325161264868 1 0.419913530349731 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695312 chr22:29695312 nonsynonymous SNV 0.915 3 21 hm5C_associated_SNPs_1210 0 0 1 0 2 EWSR1 chr22:29695321 5'GT 29695321 Upstream 10bp
chr19 39215157 39215157 1 + C T LUSC 39215157 + 39215137 39215177 41 GAGCACCTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGT GAGCACCTGCGCCGCCAGTTTGCCAGCCAGGCCAATGTTGT Direct Loss 1 0.762017480200378 1 0.532574653625488 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215157 chr19:39215157 synonymous SNV . 0 21 hm5C_associated_SNPs_1211 0 0 1 0 2 ACTN4 chr19:39215071 3'AG 39215071 Downstream 87bp
chr19 39215157 39215157 1 + C T LUSC 39215157 + 39215137 39215177 41 GAGCACCTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGT GAGCACCTGCGCCGCCAGTTTGCCAGCCAGGCCAATGTTGT Direct Loss 1 0.762017480200378 1 0.532574653625488 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215157 chr19:39215157 synonymous SNV . 0 21 hm5C_associated_SNPs_1211 0 0 1 0 2 ACTN4 chr19:39215205 5'GT 39215205 Upstream 49bp
chr7 87005024 87005024 1 + C T LUSC 87005024 + 87005004 87005044 41 CAGCATTAACTAGTGAGGAGCGAACTCGATGGGCTAAGGTT CAGCATTAACTAGTGAGGAGTGAACTCGATGGGCTAAGGTT Direct Loss 1 0.163959755365899 1 0.320297718048096 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CROT ENSG00000005469 CDS Human protein_coding chr7:87005024 chr7:87005024 stopgain 0.998 1 21 hm5C_associated_SNPs_1213 0 0 1 0 2 CROT chr7:87004948 3'AG 87004948 Downstream 77bp
chr7 87005024 87005024 1 + C T LUSC 87005024 + 87005004 87005044 41 CAGCATTAACTAGTGAGGAGCGAACTCGATGGGCTAAGGTT CAGCATTAACTAGTGAGGAGTGAACTCGATGGGCTAAGGTT Direct Loss 1 0.163959755365899 1 0.320297718048096 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CROT ENSG00000005469 CDS Human protein_coding chr7:87005024 chr7:87005024 stopgain 0.998 1 21 hm5C_associated_SNPs_1213 0 0 1 0 2 CROT chr7:87005041 5'GT 87005041 Upstream 18bp
chr11 4091338 4091338 1 + C G LUSC 4091338 + 4091318 4091358 41 GGCTGCTGGTTTGCCTATATCCAGAACCGTTACTCCAAGGA GGCTGCTGGTTTGCCTATATGCAGAACCGTTACTCCAAGGA Direct Loss 1 0.680395694555547 1 0.729320526123047 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STIM1 ENSG00000167323 CDS Human protein_coding chr11:4091338 chr11:4091338 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1215 0 0 1 0 2 STIM1 chr11:4091256 3'AG 4091256 Downstream 83bp
chr11 4091338 4091338 1 + C G LUSC 4091338 + 4091318 4091358 41 GGCTGCTGGTTTGCCTATATCCAGAACCGTTACTCCAAGGA GGCTGCTGGTTTGCCTATATGCAGAACCGTTACTCCAAGGA Direct Loss 1 0.680395694555547 1 0.729320526123047 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STIM1 ENSG00000167323 CDS Human protein_coding chr11:4091338 chr11:4091338 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1215 0 0 1 0 2 STIM1 chr11:4091433 5'GT 4091433 Upstream 96bp
chr1 22336303 22336303 1 + C T LUSC 22336303 + 22336283 22336323 41 GCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTC GCTGCAACTTCATCTGGAAGTCCACGGTGTTCACTCGAGTC Direct Loss 1 0.19416028665119 1 0.431227117776871 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336303 chr1:22336303 nonsynonymous SNV 0.238 4 21 hm5C_associated_SNPs_1216 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 48bp
chr6 35285962 35285962 1 + C T LUSC 35285962 + 35285942 35285982 41 TTCGGCAGCCATCCAGATGGCGATCCGGCTGCAGGCCGAGG TTCGGCAGCCATCCAGATGGTGATCCGGCTGCAGGCCGAGG Direct Loss 1 0.0910779642122722 1 0.0572963058948517 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DEF6 ENSG00000023892 CDS Human protein_coding chr6:35285962 chr6:35285962 nonsynonymous SNV 0.981 3 21 hm5C_associated_SNPs_1217 0 0 1 0 1 DEF6 chr6:35285950 3'AG 35285950 Downstream 13bp
chr1 47838719 47838719 1 + C G LUSC 47838719 + 47838699 47838739 41 GACAACCTTCAAGGATGGAACAAGACCATGGATGGGAAGGC GACAACCTTCAAGGATGGAAGAAGACCATGGATGGGAAGGC Direct Loss 1 0.769367062157716 1 0.566059470176697 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CMPK1 ENSG00000162368 CDS Human protein_coding chr1:47838719 chr1:47838719 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_1218 0 0 1 2 2 CMPK1 chr1:47838627 3'AG 47838627 Downstream 93bp
chr1 47838719 47838719 1 + C G LUSC 47838719 + 47838699 47838739 41 GACAACCTTCAAGGATGGAACAAGACCATGGATGGGAAGGC GACAACCTTCAAGGATGGAAGAAGACCATGGATGGGAAGGC Direct Loss 1 0.769367062157716 1 0.566059470176697 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CMPK1 ENSG00000162368 CDS Human protein_coding chr1:47838719 chr1:47838719 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_1218 0 0 1 2 2 CMPK1 chr1:47838779 5'GT 47838779 Upstream 61bp
chr19 39215195 39215195 1 + C A LUSC 39215195 + 39215175 39215215 41 TGTGGGGCCCTGGATCCAGACCAAGATGGAGGTGAGGCACG TGTGGGGCCCTGGATCCAGAACAAGATGGAGGTGAGGCACG Direct Loss 1 0.289182836372705 1 0.56903076171875 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215195 chr19:39215195 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_1219 0 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 11bp
chr12 111744769 111744769 1 + C T LUSC 111744769 + 111744749 111744789 41 TCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAG TCGGGCCCTCGGCTGGAGGCTGCGCTGGCCTCCAAGGACAG Direct Loss 1 0.301216275976378 1 0.357962667942047 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744769 chr12:111744769 synonymous SNV . 0 21 hm5C_associated_SNPs_1220 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 45bp
chr19 58906108 58906108 1 + C G LUSC 58906108 + 58906088 58906128 41 CTGGAGCGTGTGGCCAAGTCCAACCGCTGATTTTCCCAGCT CTGGAGCGTGTGGCCAAGTCGAACCGCTGATTTTCCCAGCT Direct Loss 1 0.407846330121659 1 0.12105917930603 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906108 chr19:58906108 synonymous SNV . 0 21 hm5C_associated_SNPs_1221 0 0 1 0 1 RPS5 chr19:58906049 3'AG 58906049 Downstream 60bp
chr19 16339738 16339738 1 + C T LUSC 16339738 + 16339718 16339758 41 GTGGTCCATCAAGTCCTTCCCGGTGAGCACTCTGTCCAGAC GTGGTCCATCAAGTCCTTCCTGGTGAGCACTCTGTCCAGAC Direct Loss 1 0.561285794130054 1 0.421189814805984 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16339738 chr19:16339738 nonsynonymous SNV 0.964 4 21 hm5C_associated_SNPs_1222 0 0 1 0 1 AP1M1 chr19:16339739 5'GT 16339739 Upstream 2bp
chr7 142459707 142459707 1 + C T LUSC 142459707 + 142459687 142459727 41 TCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGG TCAATGCAGCCAAGATCATCTGCCACCCCCAATACGACAGG Direct Loss 1 0.775537059995574 1 0.166470944881439 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459707 chr7:142459707 nonsynonymous SNV 0.007 2 21 hm5C_associated_SNPs_1223 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 83bp
chr1 41215344 41215344 1 + C T LUSC 41215344 + 41215324 41215364 41 TTCACACAGAAGATAACAAGCGCCGGACTCTACAGGTATTA TTCACACAGAAGATAACAAGTGCCGGACTCTACAGGTATTA Direct Loss 1 0.620614642539462 1 0.24577996134758 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NFYC ENSG00000066136 CDS Human protein_coding chr1:41215344 chr1:41215344 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1226 0 0 1 0 2 NFYC chr1:41215245 3'AG 41215245 Downstream 100bp
chr1 41215344 41215344 1 + C T LUSC 41215344 + 41215324 41215364 41 TTCACACAGAAGATAACAAGCGCCGGACTCTACAGGTATTA TTCACACAGAAGATAACAAGTGCCGGACTCTACAGGTATTA Direct Loss 1 0.620614642539462 1 0.24577996134758 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NFYC ENSG00000066136 CDS Human protein_coding chr1:41215344 chr1:41215344 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1226 0 0 1 0 2 NFYC chr1:41215358 5'GT 41215358 Upstream 15bp
chr14 95058452 95058452 1 + C A LUSC 95058452 + 95058432 95058472 41 AACCAGAGCAGCGGCAGCCACGGGGACAATATTCACTTTCA AACCAGAGCAGCGGCAGCCAAGGGGACAATATTCACTTTCA Direct Loss 1 0.900443413774491 1 0.91583526134491 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control SERPINA5 ENSG00000188488;ENSG00000273259 CDS Human other chr14:95058452 chr14:95058452 nonsynonymous SNV 0.004 4 21 hm5C_associated_SNPs_1227 0 0 1 0 1 SERPINA5 chr14:95058473 5'GT 95058473 Upstream 22bp
chr12 21205114 21205114 1 + C A LUSC 21205114 + 21205094 21205134 41 GATGAAAGTCAATGGGAACCCGTCTGTGGAAACAATGGAAT GATGAAAGTCAATGGGAACCAGTCTGTGGAAACAATGGAAT Direct Loss 1 0.412513941896763 1 0.104744642972946 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21205114 chr12:21205114 synonymous SNV . 0 21 hm5C_associated_SNPs_1230 0 0 0 0 2 SLCO1B7 chr12:21205030 3'AG 21205030 Downstream 85bp
chr12 21205114 21205114 1 + C A LUSC 21205114 + 21205094 21205134 41 GATGAAAGTCAATGGGAACCCGTCTGTGGAAACAATGGAAT GATGAAAGTCAATGGGAACCAGTCTGTGGAAACAATGGAAT Direct Loss 1 0.412513941896763 1 0.104744642972946 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21205114 chr12:21205114 synonymous SNV . 0 21 hm5C_associated_SNPs_1230 0 0 0 0 2 SLCO1B7 chr12:21205195 5'GT 21205195 Upstream 82bp
chr4 41621300 41621300 1 + C T LUSC 41621300 + 41621280 41621320 41 GGCGGACTTCCCATGGTGAGCCGAAATCAGCAGTGCCTTTT GGCGGACTTCCCATGGTGAGTCGAAATCAGCAGTGCCTTTT Direct Loss 1 0.592945826003568 1 0.472718685865402 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41621300 chr4:41621300 nonsynonymous SNV 0.294 2 21 hm5C_associated_SNPs_1231 0 0 0 0 1 LIMCH1 chr4:41621205 3'AG 41621205 Downstream 96bp
chrX 135593020 135593020 1 + C A LUSC 135593020 + 135593000 135593040 41 CTGAGAGGATGGGAGGCTTTCCTCAATGCTCCTGAGGCCAA CTGAGAGGATGGGAGGCTTTACTCAATGCTCCTGAGGCCAA Direct Loss 1 0.547507396867613 1 0.123289585113525 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135593020 chrX:135593020 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_1232 0 0 1 0 1 HTATSF1 chrX:135592967 3'AG 135592967 Downstream 54bp
chr1 26883509 26883509 1 + C G LUSC 26883509 + 26883489 26883529 41 AAGCTATACCGTCGTGAGATCAAGCCACCCTTCAAGCCAGC AAGCTATACCGTCGTGAGATGAAGCCACCCTTCAAGCCAGC Direct Loss 1 0.257177600237683 1 0.462681144475937 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26883509 chr1:26883509 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1234 0 0 1 0 1 RPS6KA1 chr1:26883489 3'AG 26883489 Downstream 21bp
chr20 62368988 62368988 1 + C T LUSC 62368988 + 62368968 62369008 41 CTCGCTGTGGGCGCTGTGCACAGCCTGCCGCAGGTAGGTCC CTCGCTGTGGGCGCTGTGCATAGCCTGCCGCAGGTAGGTCC Direct Loss 1 0.619525308885288 1 0.197488784790039 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LIME1 ENSG00000203896 CDS Human protein_coding chr20:62368988 chr20:62368988 nonsynonymous SNV 0.340 2 21 hm5C_associated_SNPs_1235 0 0 1 0 1 LIME1 chr20:62369000 5'GT 62369000 Upstream 13bp
chr15 36989588 36989588 1 + C A LUSC 36989588 + 36989568 36989608 41 TAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTCACAT TAGAGAAAAACCTGTCCTTCATAGGTAAGTATTATTCACAT Direct Loss 1 0.762347565224718 1 0.247441470623016 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989588 chr15:36989588 nonsynonymous SNV 0.994 1 21 hm5C_associated_SNPs_1238 0 0 1 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 65bp
chr15 36989588 36989588 1 + C A LUSC 36989588 + 36989568 36989608 41 TAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTCACAT TAGAGAAAAACCTGTCCTTCATAGGTAAGTATTATTCACAT Direct Loss 1 0.762347565224718 1 0.247441470623016 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989588 chr15:36989588 nonsynonymous SNV 0.994 1 21 hm5C_associated_SNPs_1238 0 0 1 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 4bp
chr1 22336335 22336335 1 + C T LUSC 22336335 + 22336315 22336355 41 ACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGTGAG ACTCGAGTCTCCGCCTTCATTGACTGGATTGAGGAGGTGAG Direct Loss 1 0.648923312201123 1 0.389269590377808 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336335 chr1:22336335 synonymous SNV . 0 21 hm5C_associated_SNPs_1239 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 16bp
chr5 134154670 134154670 1 + C T LUSC 134154670 + 134154650 134154690 41 AAGAACCCAAGGAAGGCGAGCGGAAGATTTACTTGGCAATT AAGAACCCAAGGAAGGCGAGTGGAAGATTTACTTGGCAATT Direct Loss 1 0.618373064412567 1 0.529190540313721 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134154670 chr5:134154670 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1241 0 0 1 0 1 DDX46 chr5:134154694 5'GT 134154694 Upstream 25bp
chr2 233671354 233671354 1 + C T LUSC 233671354 + 233671334 233671374 41 CTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTA CTTTTCTCCAGGTCCAGCTCTCCCTCCTCATATGGTAAGTA Direct Loss 1 0.0531755860955072 1 0.0821062922477722 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671354 chr2:233671354 nonsynonymous SNV 0.979 3 21 hm5C_associated_SNPs_1243 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 14bp
chr2 37458880 37458880 1 + C T LUSC 37458880 + 37458860 37458900 41 GCTGAGGTCAGGTTTGGGGCCGTTGTGTGCCGTGGCGCGCG GCTGAGGTCAGGTTTGGGGCTGTTGTGTGCCGTGGCGCGCG Direct Loss 1 0.587601680162028 1 0.0919211506843567 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37458880 chr2:37458880 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_1244 0 0 1 0 1 NDUFAF7 chr2:37458903 5'GT 37458903 Upstream 24bp
chr2 37475350 37475350 1 + C A LUSC 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATATGTTAATGAATACAAAGAAGATGGGAGAGAGA Direct Loss 1 0.394034310075219 1 0.28784304857254 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475350 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_1245 0 0 1 2 1 NDUFAF7 chr2:37475278 3'AG 37475278 Downstream 73bp
chr7 142457345 142457345 1 + C T LUSC 142457345 + 142457325 142457365 41 ACTCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTG ACTCTACCACCATGAATCCATTCCTGATCCTTACCTTTGTG Direct Loss 1 0.246106629512854 1 0.0457786023616791 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457345 chr7:142457345 nonsynonymous SNV 0.422 1 21 hm5C_associated_SNPs_1246 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 31bp
chr20 54941160 54941160 1 + C T LUSC 54941160 + 54941140 54941180 41 CCTGCAATCCTGCTGAAACTCGGATTTAAAGAGTCCCTGGT CCTGCAATCCTGCTGAAACTTGGATTTAAAGAGTCCCTGGT Direct Loss 1 0.833914023353559 1 0.605350732803345 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM210B ENSG00000124098 CDS Human protein_coding chr20:54941160 chr20:54941160 synonymous SNV . 0 21 hm5C_associated_SNPs_1247 0 0 1 0 1 FAM210B chr20:54941127 3'AG 54941127 Downstream 34bp
chr19 18961004 18961004 1 + C T LUSC 18961004 + 18960984 18961024 41 TGTCGCAACGTCTTCCTCCTCGGCTTCATCCCGGCCAAAGC TGTCGCAACGTCTTCCTCCTTGGCTTCATCCCGGCCAAAGC Direct Loss 1 0.597035688519132 1 0.466250896453857 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18961004 chr19:18961004 synonymous SNV . 0 21 hm5C_associated_SNPs_1248 0 0 1 0 1 UPF1 chr19:18961051 5'GT 18961051 Upstream 48bp
chr19 39950220 39950220 1 + C G LUSC 39950220 + 39950200 39950240 41 GATCCCAATCTGTGGACTGTCAAATGTAAGGTATGTGCTCT GATCCCAATCTGTGGACTGTGAAATGTAAGGTATGTGCTCT Direct Loss 1 0.398525692170666 1 0.464331060647964 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950220 chr19:39950220 synonymous SNV . 0 21 hm5C_associated_SNPs_1249 0 0 1 0 2 SUPT5H chr19:39950199 3'AG 39950199 Downstream 22bp
chr19 39950220 39950220 1 + C G LUSC 39950220 + 39950200 39950240 41 GATCCCAATCTGTGGACTGTCAAATGTAAGGTATGTGCTCT GATCCCAATCTGTGGACTGTGAAATGTAAGGTATGTGCTCT Direct Loss 1 0.398525692170666 1 0.464331060647964 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950220 chr19:39950220 synonymous SNV . 0 21 hm5C_associated_SNPs_1249 0 0 1 0 2 SUPT5H chr19:39950229 5'GT 39950229 Upstream 10bp
chr1 22336262 22336262 1 + C T MESO 22336262 + 22336242 22336282 41 CTGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTG CTGGCAGGTCCACGGTGTGATCAGCTTTGTTTCTGCCTTTG Direct Loss 1 0.297077829782216 1 0.114924132823944 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336262 chr1:22336262 nonsynonymous SNV 0.977 4 21 hm5C_associated_SNPs_1255 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 89bp
chr6 42957366 42957366 1 + C G OV 42957366 + 42957346 42957386 41 CAGGAGCCCCCCAAGGTTGCCAAATGCACAGCCAAGCCTAG CAGGAGCCCCCCAAGGTTGCGAAATGCACAGCCAAGCCTAG Direct Loss 1 0.238594209174716 1 0.810090363025665 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42957366 chr6:42957366 synonymous SNV . 0 21 hm5C_associated_SNPs_1256 0 0 1 0 2 PPP2R5D chr6:42957349 3'AG 42957349 Downstream 18bp
chr6 42957366 42957366 1 + C G OV 42957366 + 42957346 42957386 41 CAGGAGCCCCCCAAGGTTGCCAAATGCACAGCCAAGCCTAG CAGGAGCCCCCCAAGGTTGCGAAATGCACAGCCAAGCCTAG Direct Loss 1 0.238594209174716 1 0.810090363025665 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42957366 chr6:42957366 synonymous SNV . 0 21 hm5C_associated_SNPs_1256 0 0 1 0 2 PPP2R5D chr6:42957426 5'GT 42957426 Upstream 61bp
chr4 42020141 42020141 1 + C T OV 42020141 + 42020121 42020161 41 TTTACAGCAGAAGGTATAGGCACAGAACTCAAAGCTCCACT TTTACAGCAGAAGGTATAGGTACAGAACTCAAAGCTCCACT Direct Loss 1 0.541957637350375 1 0.129466533660889 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42020141 chr4:42020141 synonymous SNV . 0 21 hm5C_associated_SNPs_1257 0 0 1 0 2 SLC30A9 chr4:42020128 3'AG 42020128 Downstream 14bp
chr4 42020141 42020141 1 + C T OV 42020141 + 42020121 42020161 41 TTTACAGCAGAAGGTATAGGCACAGAACTCAAAGCTCCACT TTTACAGCAGAAGGTATAGGTACAGAACTCAAAGCTCCACT Direct Loss 1 0.541957637350375 1 0.129466533660889 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42020141 chr4:42020141 synonymous SNV . 0 21 hm5C_associated_SNPs_1257 0 0 1 0 2 SLC30A9 chr4:42020187 5'GT 42020187 Upstream 47bp
chr20 62309512 62309512 1 + C G OV 62309512 + 62309492 62309532 41 GCCCAGGGCTGAACATGGAGCTGGAAGACATTGCAAAGCTG GCCCAGGGCTGAACATGGAGGTGGAAGACATTGCAAAGCTG Direct Loss 1 0.63392882527071 1 0.698031902313232 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62309512 chr20:62309512 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_1258 0 0 1 0 1 RTEL1 chr20:62309498 3'AG 62309498 Downstream 15bp
chr1 43911903 43911903 1 + C A OV 43911903 + 43911883 43911923 41 CAGCGGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGC CAGCGGGCACTGCCTGGGGGAATCATCCTCATGGAACTGGC Direct Loss 1 0.107833700314985 1 0.114275753498077 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911903 chr1:43911903 synonymous SNV . 0 21 hm5C_associated_SNPs_1259 0 0 0 0 2 SZT2 chr1:43911850 3'AG 43911850 Downstream 54bp
chr1 43911903 43911903 1 + C A OV 43911903 + 43911883 43911923 41 CAGCGGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGC CAGCGGGCACTGCCTGGGGGAATCATCCTCATGGAACTGGC Direct Loss 1 0.107833700314985 1 0.114275753498077 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911903 chr1:43911903 synonymous SNV . 0 21 hm5C_associated_SNPs_1259 0 0 0 0 2 SZT2 chr1:43911930 5'GT 43911930 Upstream 28bp
chr2 219269106 219269106 1 + C T OV 219269106 + 219269086 219269126 41 GAGCAACTCAGCCGTGTGGACGACGTGTACTCAGTGCTCAG GAGCAACTCAGCCGTGTGGATGACGTGTACTCAGTGCTCAG Direct Loss 1 0.605466684674256 1 0.0898436605930328 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219269106 chr2:219269106 synonymous SNV . 0 21 hm5C_associated_SNPs_1261 0 0 1 0 1 CTDSP1 chr2:219269020 3'AG 219269020 Downstream 87bp
chr19 42854513 42854513 1 + C T OV 42854513 + 42854493 42854533 41 GCCCACTCTGCGAGGAGCATCGGGACTGCCACGCCTGCACC GCCCACTCTGCGAGGAGCATTGGGACTGCCACGCCTGCACC Direct Loss 1 0.817892314071882 1 0.846403837203979 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42854513 chr19:42854513 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_1262 0 0 0 0 1 MEGF8 chr19:42854536 5'GT 42854536 Upstream 24bp
chr15 81221505 81221505 1 + C A OV 81221505 + 81221485 81221525 41 ACCATAGCGGAAGGACCCTCCCTATAGGCCAGTAGGTTTGC ACCATAGCGGAAGGACCCTCACTATAGGCCAGTAGGTTTGC Direct Loss 1 0.0299260335078192 1 0.763914942741394 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81221505 chr15:81221505 nonsynonymous SNV 0.989 4 21 hm5C_associated_SNPs_1263 0 0 1 0 1 CEMIP chr15:81221515 5'GT 81221515 Upstream 11bp
chr19 14674819 14674819 1 + C T OV 14674819 + 14674799 14674839 41 CCTAACAGAGTACGCGGGGCCCCTTTTCATCTACCTGCTCT CCTAACAGAGTACGCGGGGCTCCTTTTCATCTACCTGCTCT Direct Loss 1 0.133968594896441 1 0.081735372543335 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TECR ENSG00000099797 CDS Human protein_coding chr19:14674819 chr19:14674819 nonsynonymous SNV 0.988 4 21 hm5C_associated_SNPs_1265 0 0 1 0 2 TECR chr19:14674794 3'AG 14674794 Downstream 26bp
chr19 14674819 14674819 1 + C T OV 14674819 + 14674799 14674839 41 CCTAACAGAGTACGCGGGGCCCCTTTTCATCTACCTGCTCT CCTAACAGAGTACGCGGGGCTCCTTTTCATCTACCTGCTCT Direct Loss 1 0.133968594896441 1 0.081735372543335 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TECR ENSG00000099797 CDS Human protein_coding chr19:14674819 chr19:14674819 nonsynonymous SNV 0.988 4 21 hm5C_associated_SNPs_1265 0 0 1 0 2 TECR chr19:14674909 5'GT 14674909 Upstream 91bp
chr14 75746612 75746612 1 + C A OV 75746612 + 75746592 75746632 41 GACCTGGCCGTCTCCAGTGCCAACTTCATTCCCACGGTCAC GACCTGGCCGTCTCCAGTGCAAACTTCATTCCCACGGTCAC Direct Loss 1 0.262571898767664 1 0.0354008376598358 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746612 chr14:75746612 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1266 0 0 0 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 33bp
chr10 89487114 89487114 1 + C A OV 89487114 + 89487094 89487134 41 AAGACACGGCTGGAAGGGTGCAGCAAGTTTGTCCTGGCACA AAGACACGGCTGGAAGGGTGAAGCAAGTTTGTCCTGGCACA Direct Loss 1 0.79407417947032 1 0.694522857666016 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89487114 chr10:89487114 stopgain 0.996 0 21 hm5C_associated_SNPs_1267 0 0 0 0 1 PAPSS2 chr10:89487041 3'AG 89487041 Downstream 74bp
chr17 73486373 73486373 1 + C G OV 73486373 + 73486353 73486393 41 AGTCCTCTGGGTTCTGGCAACTGCCTGTGGAGAGGCCCGTG AGTCCTCTGGGTTCTGGCAAGTGCCTGTGGAGAGGCCCGTG Direct Loss 1 0.445736704355554 1 0.135970622301102 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73486373 chr17:73486373 nonsynonymous SNV 0.962 1 21 hm5C_associated_SNPs_1270 0 0 1 0 2 TMEM94 chr17:73486315 3'AG 73486315 Downstream 59bp
chr17 73486373 73486373 1 + C G OV 73486373 + 73486353 73486393 41 AGTCCTCTGGGTTCTGGCAACTGCCTGTGGAGAGGCCCGTG AGTCCTCTGGGTTCTGGCAAGTGCCTGTGGAGAGGCCCGTG Direct Loss 1 0.445736704355554 1 0.135970622301102 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73486373 chr17:73486373 nonsynonymous SNV 0.962 1 21 hm5C_associated_SNPs_1270 0 0 1 0 2 TMEM94 chr17:73486431 5'GT 73486431 Upstream 59bp
chr3 61975349 61975349 1 + C T OV 61975349 + 61975329 61975369 41 CTAGTGTCAGCTGTGGGGGCCGTCACCAGTCTCCTATTGAC CTAGTGTCAGCTGTGGGGGCTGTCACCAGTCTCCTATTGAC Direct Loss 1 0.174189722182618 1 0.0840773284435272 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:61975349 chr3:61975349 nonsynonymous SNV 0.407 1 21 hm5C_associated_SNPs_1271 0 0 1 0 1 PTPRG chr3:61975299 3'AG 61975299 Downstream 51bp
chr17 35413929 35413929 1 + C G OV 35413929 + 35413909 35413949 41 TGTACCGCTCTCTTTTTGGCCAGCTCCACCCTCCCGACGAA TGTACCGCTCTCTTTTTGGCGAGCTCCACCCTCCCGACGAA Direct Loss 1 0.374597329136331 1 0.717602133750916 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AATF ENSG00000108270 CDS Human other chr17:35413929 chr17:35413929 nonsynonymous SNV 0.858 0 21 hm5C_associated_SNPs_1272 0 0 1 0 1 AATF chr17:35413901 3'AG 35413901 Downstream 29bp
chr1 65871792 65871792 1 + C T OV 65871792 + 65871772 65871812 41 TGCCTGGGGGCCAGAACGAACGTGGGAAAGGATCAAGTAAT TGCCTGGGGGCCAGAACGAATGTGGGAAAGGATCAAGTAAT Direct Loss 1 0.56449408710265 1 0.445267498493195 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65871792 chr1:65871792 nonsynonymous SNV 0.571 4 21 hm5C_associated_SNPs_1273 0 0 0 0 1 DNAJC6 chr1:65871816 5'GT 65871816 Upstream 25bp
chr1 82372824 82372824 1 + C G OV 82372824 + 82372804 82372844 41 TTGAGAGCGCTAACTATGGTCGGACGGATGACAAGATTTGT TTGAGAGCGCTAACTATGGTGGGACGGATGACAAGATTTGT Direct Loss 1 0.269026580148806 1 0.515969276428223 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRL2 ENSG00000117114 CDS Human protein_coding chr1:82372824 chr1:82372824 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1274 0 0 1 0 1 ADGRL2 chr1:82372915 5'GT 82372915 Upstream 92bp
chr6 31602076 31602076 1 + C A OV 31602076 + 31602056 31602096 41 AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACA AGCCTGAGGGCCCAGGCCCTAAGGCAGAGTCCAGAGATACA Direct Loss 1 0.441513264310534 1 0.759278833866119 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602076 chr6:31602076 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_1275 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 64bp
chr6 31602076 31602076 1 + C A OV 31602076 + 31602056 31602096 41 AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACA AGCCTGAGGGCCCAGGCCCTAAGGCAGAGTCCAGAGATACA Direct Loss 1 0.441513264310534 1 0.759278833866119 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602076 chr6:31602076 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_1275 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 67bp
chr17 7750213 7750213 1 + C T PAAD 7750213 + 7750193 7750233 41 ACCACCACCACCACCACCACCACCCCTGCCTGGCCTGGCTA ACCACCACCACCACCACCACTACCCCTGCCTGGCCTGGCTA Direct Loss 1 0.115647041007358 1 0.756833910942078 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7750213 chr17:7750213 nonsynonymous SNV 0.923 2 21 hm5C_associated_SNPs_1277 0 0 1 0 1 KDM6B chr17:7750137 3'AG 7750137 Downstream 77bp
chr3 186302256 186302256 1 + C T PAAD 186302256 + 186302236 186302276 41 TAAGATCACCAGGCCAGGAGCGAAGCTATGGAAGAAAGGGG TAAGATCACCAGGCCAGGAGTGAAGCTATGGAAGAAAGGGG Direct Loss 1 0.315247973023841 1 0.430714786052704 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186302256 chr3:186302256 nonsynonymous SNV 0.995 1 21 hm5C_associated_SNPs_1278 0 0 1 0 1 DNAJB11 chr3:186302219 3'AG 186302219 Downstream 38bp
chr4 20568888 20568888 1 + C A PAAD 20568888 + 20568868 20568908 41 TTTGAATTAATTTTCAGGTCCTGTGGATGTCAATATTCTAG TTTGAATTAATTTTCAGGTCATGTGGATGTCAATATTCTAG Direct Loss 1 0.0811732380056575 1 0.0509078502655029 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568888 chr4:20568888 nonsynonymous SNV 0.993 4 21 hm5C_associated_SNPs_1279 0 0 0 0 1 SLIT2 chr4:20568885 3'AG 20568885 Downstream 4bp
chr14 24567497 24567497 1 + C T PAAD 24567497 + 24567477 24567517 41 CTTCTCAGCGGGACACGGTACAACTCCCGCCTGGTGGGGCC CTTCTCAGCGGGACACGGTATAACTCCCGCCTGGTGGGGCC Direct Loss 1 0.600391357535952 1 0.036937803030014 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCK2 ENSG00000100889 CDS Human protein_coding chr14:24567497 chr14:24567497 stopgain 0.741 0 21 hm5C_associated_SNPs_1280 0 0 1 0 1 PCK2 chr14:24567412 3'AG 24567412 Downstream 86bp
chr17 48185696 48185696 1 + C T PAAD 48185696 + 48185676 48185716 41 TCCGCAGAATGCCATGAGGGCGACTGTGGAAAGCCATGAGT TCCGCAGAATGCCATGAGGGTGACTGTGGAAAGCCATGAGT Direct Loss 1 0.373627962278886 1 0.0583402216434479 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK2 ENSG00000005882 CDS Human protein_coding chr17:48185696 chr17:48185696 nonsynonymous SNV 0.987 4 21 hm5C_associated_SNPs_1281 0 0 1 0 2 PDK2 chr17:48185683 3'AG 48185683 Downstream 14bp
chr17 48185696 48185696 1 + C T PAAD 48185696 + 48185676 48185716 41 TCCGCAGAATGCCATGAGGGCGACTGTGGAAAGCCATGAGT TCCGCAGAATGCCATGAGGGTGACTGTGGAAAGCCATGAGT Direct Loss 1 0.373627962278886 1 0.0583402216434479 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK2 ENSG00000005882 CDS Human protein_coding chr17:48185696 chr17:48185696 nonsynonymous SNV 0.987 4 21 hm5C_associated_SNPs_1281 0 0 1 0 2 PDK2 chr17:48185781 5'GT 48185781 Upstream 86bp
chr19 971939 971939 1 + C T PAAD 971939 + 971919 971959 41 GCTCCCAACAAAGGAGGCGGCGGCGGCGGCGGCAGCAGCAG GCTCCCAACAAAGGAGGCGGTGGCGGCGGCGGCAGCAGCAG Direct Loss 1 0.864763293550841 1 0.595461368560791 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARID3A ENSG00000116017 CDS Human protein_coding chr19:971939 chr19:971939 synonymous SNV . 0 21 hm5C_associated_SNPs_1282 0 0 0 0 1 ARID3A chr19:971878 3'AG 971878 Downstream 62bp
chr9 135942552 135942552 1 + C T PAAD 135942552 + 135942532 135942572 41 AAGGTTACTGATCCCCGAGCCCTGACGCTGGCCTATAAGGT AAGGTTACTGATCCCCGAGCTCTGACGCTGGCCTATAAGGT Direct Loss 1 0.173084081242953 1 0.400818169116974 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135942552 chr9:135942552 synonymous SNV . 0 21 hm5C_associated_SNPs_1283 0 0 1 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 78bp
chr6 52288769 52288769 1 + C T PAAD 52288769 + 52288749 52288789 41 AGCCTTCCACAGAAGTCAGACGCTGAGCTACAGGAACGGCT AGCCTTCCACAGAAGTCAGATGCTGAGCTACAGGAACGGCT Direct Loss 1 0.268467182329738 1 0.314289271831512 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52288769 chr6:52288769 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_1286 1 0 1 0 1 EFHC1 chr6:52288744 3'AG 52288744 Downstream 26bp
chr14 103805668 103805668 1 + C T PAAD 103805668 + 103805648 103805688 41 AATACAGGCGCCATTTCCTACGAGTAAGCAAAGTGCTCTGG AATACAGGCGCCATTTCCTATGAGTAAGCAAAGTGCTCTGG Direct Loss 1 0.47932100092666 1 0.434911072254181 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103805668 chr14:103805668 stopgain 0.987 1 21 hm5C_associated_SNPs_1287 0 0 1 0 1 EIF5 chr14:103805670 5'GT 103805670 Upstream 3bp
chr11 46387834 46387834 1 + C T PAAD 46387834 + 46387814 46387854 41 CTTTCTTTAGGAGACATTTCCGGGGGAAGGTGCCAGGCCCT CTTTCTTTAGGAGACATTTCTGGGGGAAGGTGCCAGGCCCT Direct Loss 1 0.828536810306663 1 0.981938362121582 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46387834 chr11:46387834 nonsynonymous SNV 0.363 1 21 hm5C_associated_SNPs_1288 0 0 1 0 1 DGKZ chr11:46387794 3'AG 46387794 Downstream 41bp
chr14 105179914 105179914 1 + C T PAAD 105179914 + 105179894 105179934 41 CGGGGGCAGCAAGGCAGCCTCCATGGATCCCCCAAGAGCCA CGGGGGCAGCAAGGCAGCCTTCATGGATCCCCCAAGAGCCA Direct Loss 1 0.140605456212625 1 0.142610758543015 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105179914 chr14:105179914 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_1289 0 0 1 0 1 INF2 chr14:105179943 5'GT 105179943 Upstream 30bp
chr7 43590119 43590119 1 + C T PAAD 43590119 + 43590099 43590139 41 ACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGCGGGTG ACAAGAAGGAGTACATCGAGTGCATGGTGAAGTGGCGGGTG Direct Loss 1 0.292464343696257 1 0.125020533800125 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43590119 chr7:43590119 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1290 0 0 0 0 2 HECW1 chr7:43590044 3'AG 43590044 Downstream 76bp
chr7 43590119 43590119 1 + C T PAAD 43590119 + 43590099 43590139 41 ACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGCGGGTG ACAAGAAGGAGTACATCGAGTGCATGGTGAAGTGGCGGGTG Direct Loss 1 0.292464343696257 1 0.125020533800125 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43590119 chr7:43590119 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1290 0 0 0 0 2 HECW1 chr7:43590190 5'GT 43590190 Upstream 72bp
chr17 48545740 48545740 1 + C T PAAD 48545740 + 48545720 48545760 41 AAGATGAAGAGGTTGACCAGCGGGGAGAGCAACCCCCGGGG AAGATGAAGAGGTTGACCAGTGGGGAGAGCAACCCCCGGGG Direct Loss 1 0.911029526291639 1 0.942078590393066 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHAD ENSG00000136457 CDS Human protein_coding chr17:48545740 chr17:48545740 synonymous SNV . 0 21 hm5C_associated_SNPs_1291 0 0 1 0 1 CHAD chr17:48545793 5'GT 48545793 Upstream 54bp
chr7 44747498 44747498 1 + C T PAAD 44747498 + 44747478 44747518 41 GTATGCCGGCCGGGACCCAGCGGCTGCTCCAGCCACCGGCA GTATGCCGGCCGGGACCCAGTGGCTGCTCCAGCCACCGGCA Direct Loss 1 0.757796568007802 1 0.70451021194458 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44747498 chr7:44747498 nonsynonymous SNV 0.983 3 21 hm5C_associated_SNPs_1292 0 0 1 0 1 OGDH chr7:44747478 3'AG 44747478 Downstream 21bp
chr19 13054419 13054419 1 + C T PAAD 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTGAGGAGTTTGGTAACGAGACGTGGGGCGTAAC Direct Loss 1 0.630646386022579 1 0.44335526227951 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054419 synonymous SNV . 0 21 hm5C_associated_SNPs_1293 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 69bp
chr19 13054419 13054419 1 + C T PAAD 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTGAGGAGTTTGGTAACGAGACGTGGGGCGTAAC Direct Loss 1 0.630646386022579 1 0.44335526227951 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054419 synonymous SNV . 0 21 hm5C_associated_SNPs_1293 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 25bp
chr1 236347193 236347193 1 + C A PAAD 236347193 + 236347173 236347213 41 TTTCTTCCGAGTTAGAAATCCTACAAAGGACCTTGTAAGTA TTTCTTCCGAGTTAGAAATCATACAAAGGACCTTGTAAGTA Direct Loss 1 0.61448611789054 1 0.207026809453964 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPR137B ENSG00000077585 CDS Human protein_coding chr1:236347193 chr1:236347193 nonsynonymous SNV 0.602 3 21 hm5C_associated_SNPs_1294 0 0 0 1 1 GPR137B chr1:236347206 5'GT 236347206 Upstream 14bp
chr2 158157419 158157419 1 + C G PAAD 158157419 + 158157399 158157439 41 ACCTCACCCAGCAAAGGGAGCTGCGAAAGAAACTGAAGTGC ACCTCACCCAGCAAAGGGAGGTGCGAAAGAAACTGAAGTGC Direct Loss 1 0.550994422057113 1 0.372284710407257 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT5 ENSG00000136542 CDS Human protein_coding chr2:158157419 chr2:158157419 nonsynonymous SNV 0.974 3 21 hm5C_associated_SNPs_1296 0 0 0 0 1 GALNT5 chr2:158157511 5'GT 158157511 Upstream 93bp
chr1 154207157 154207157 1 + C A PAAD 154207157 + 154207137 154207177 41 ATGAGGAAGGCAAAGAAAATCGAGACCGGGACAGAGACTAT ATGAGGAAGGCAAAGAAAATAGAGACCGGGACAGAGACTAT Direct Loss 1 0.894004168883005 1 0.576895833015442 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154207157 chr1:154207157 synonymous SNV . 0 21 hm5C_associated_SNPs_1297 0 0 1 0 1 UBAP2L chr1:154207067 3'AG 154207067 Downstream 91bp
chr15 39876541 39876541 1 + C T PAAD 39876541 + 39876521 39876561 41 GGCCAATGAGCTGAGGCGGCCTCCCCTATGCTATCACAACG GGCCAATGAGCTGAGGCGGCTTCCCCTATGCTATCACAACG Direct Loss 1 0.17709199589204 1 0.261710464954376 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control THBS1 ENSG00000137801 CDS Human protein_coding chr15:39876541 chr15:39876541 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_1298 0 0 1 0 2 THBS1 chr15:39876501 3'AG 39876501 Downstream 41bp
chr15 39876541 39876541 1 + C T PAAD 39876541 + 39876521 39876561 41 GGCCAATGAGCTGAGGCGGCCTCCCCTATGCTATCACAACG GGCCAATGAGCTGAGGCGGCTTCCCCTATGCTATCACAACG Direct Loss 1 0.17709199589204 1 0.261710464954376 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control THBS1 ENSG00000137801 CDS Human protein_coding chr15:39876541 chr15:39876541 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_1298 0 0 1 0 2 THBS1 chr15:39876623 5'GT 39876623 Upstream 83bp
chr2 231931688 231931688 1 + C A PCPG 231931688 + 231931668 231931708 41 TGCCTGAAGGAGAAAAAAAACCAATTGACCAGAGATTGGAA TGCCTGAAGGAGAAAAAAAAACAATTGACCAGAGATTGGAA Direct Loss 1 0.184048949038683 1 0.297013372182846 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231931688 chr2:231931688 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1299 0 0 1 0 1 PSMD1 chr2:231931620 3'AG 231931620 Downstream 69bp
chr19 17688792 17688792 1 + C T PRAD 17688792 + 17688772 17688812 41 GAACACCAGCCAGGTGGAGGCGCTGGGGATCCAGATGCTGC GAACACCAGCCAGGTGGAGGTGCTGGGGATCCAGATGCTGC Direct Loss 1 0.570546287211553 1 0.517859578132629 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COLGALT1 ENSG00000130309 CDS Human protein_coding chr19:17688792 chr19:17688792 nonsynonymous SNV 0.726 2 21 hm5C_associated_SNPs_1301 0 0 1 0 1 COLGALT1 chr19:17688766 3'AG 17688766 Downstream 27bp
chr1 156105740 156105740 1 + C T PRAD 156105740 + 156105720 156105760 41 ACCTGGAGGACTCACTGGCCCGTGAGCGGGACACCAGCCGG ACCTGGAGGACTCACTGGCCTGTGAGCGGGACACCAGCCGG Direct Loss 1 0.837278862702532 1 0.399949669837952 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156105740 chr1:156105740 nonsynonymous SNV 0.999 5 21 hm5C_associated_SNPs_1302 0 0 1 0 1 LMNA chr1:156105692 3'AG 156105692 Downstream 49bp
chr17 7612511 7612511 1 + C T PRAD 7612511 + 7612491 7612531 41 CCACCAGCAATGCAACCTCCCGGGGTGCTGAAGGCCCCCTG CCACCAGCAATGCAACCTCCTGGGGTGCTGAAGGCCCCCTG Direct Loss 1 0.954471290706038 1 0.974896848201752 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EFNB3 ENSG00000108947 CDS Human protein_coding chr17:7612511 chr17:7612511 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1303 0 0 0 0 1 EFNB3 chr17:7612485 3'AG 7612485 Downstream 27bp
chr16 72142736 72142736 1 + C A PRAD 72142736 + 72142716 72142756 41 GAACATCCGCACAGGGATGCCCTGCCACTTGCACCCCACCA GAACATCCGCACAGGGATGCACTGCCACTTGCACCCCACCA Direct Loss 1 0.104177693526168 1 0.0731126964092255 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72142736 chr16:72142736 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1304 0 0 1 0 2 DHX38 chr16:72142699 3'AG 72142699 Downstream 38bp
chr16 72142736 72142736 1 + C A PRAD 72142736 + 72142716 72142756 41 GAACATCCGCACAGGGATGCCCTGCCACTTGCACCCCACCA GAACATCCGCACAGGGATGCACTGCCACTTGCACCCCACCA Direct Loss 1 0.104177693526168 1 0.0731126964092255 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72142736 chr16:72142736 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1304 0 0 1 0 2 DHX38 chr16:72142824 5'GT 72142824 Upstream 89bp
chr17 72306164 72306164 1 + C T PRAD 72306164 + 72306144 72306184 41 CCCCTTCAATAGGTGTGTGACGAGGCCCTCTTCTGCCTCCG CCCCTTCAATAGGTGTGTGATGAGGCCCTCTTCTGCCTCCG Direct Loss 1 0.769122418691307 1 0.775040745735168 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72306164 chr17:72306164 synonymous SNV . 0 21 hm5C_associated_SNPs_1305 0 0 0 2 1 DNAI2 chr17:72306156 3'AG 72306156 Downstream 9bp
chr18 19348668 19348668 1 + C T PRAD 19348668 + 19348648 19348688 41 AGAGTGGTGCGAGGAGTGGACTGGCAGTGGGAAGATCAAGA AGAGTGGTGCGAGGAGTGGATTGGCAGTGGGAAGATCAAGA Direct Loss 1 0.608156087466059 1 0.152094334363937 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIB1 ENSG00000101752 CDS Human protein_coding chr18:19348668 chr18:19348668 synonymous SNV . 0 21 hm5C_associated_SNPs_1306 0 0 1 0 1 MIB1 chr18:19348713 5'GT 19348713 Upstream 46bp
chr17 80895147 80895147 1 + C T PRAD 80895147 + 80895127 80895167 41 AGTGTGTGTTGTTCTTCCAGCCACCCCTTTGCTGTGAAGTT AGTGTGTGTTGTTCTTCCAGTCACCCCTTTGCTGTGAAGTT Direct Loss 1 0.016180138352586 1 0.102726101875305 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBCD ENSG00000141556 CDS Human protein_coding chr17:80895147 chr17:80895147 synonymous SNV . 0 21 hm5C_associated_SNPs_1307 0 0 1 0 1 TBCD chr17:80895147 3'AG 80895147 Downstream 1bp
chr22 38352843 38352843 1 + C T PRAD 38352843 + 38352823 38352863 41 CTAGATGACTTGGAGAATGCCGAAGAGGTCAGTATTCAGCC CTAGATGACTTGGAGAATGCTGAAGAGGTCAGTATTCAGCC Direct Loss 1 0.634045015727553 1 0.640478849411011 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352843 chr22:38352843 synonymous SNV . 0 21 hm5C_associated_SNPs_1308 0 0 1 0 3 POLR2F chr22:38352780 3'AG 38352780 Downstream 64bp
chr22 38352843 38352843 1 + C T PRAD 38352843 + 38352823 38352863 41 CTAGATGACTTGGAGAATGCCGAAGAGGTCAGTATTCAGCC CTAGATGACTTGGAGAATGCTGAAGAGGTCAGTATTCAGCC Direct Loss 1 0.634045015727553 1 0.640478849411011 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352843 chr22:38352843 synonymous SNV . 0 21 hm5C_associated_SNPs_1308 0 0 1 0 3 POLR2F chr22:38352849 5'GT 38352849 Upstream 7bp
chr22 38352843 38352843 1 + C T PRAD 38352843 + 38352823 38352863 41 CTAGATGACTTGGAGAATGCCGAAGAGGTCAGTATTCAGCC CTAGATGACTTGGAGAATGCTGAAGAGGTCAGTATTCAGCC Direct Loss 1 0.634045015727553 1 0.640478849411011 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352843 chr22:38352843 synonymous SNV . 0 21 hm5C_associated_SNPs_1308 0 0 1 0 3 POLR2F chr22:38352908 5'GT 38352908 Upstream 66bp
chr11 581559 581559 1 + C T PRAD 581559 + 581539 581579 41 TGTGGCCCGGAGCCCAGGGCCGGATGGACACCCACAGGTCG TGTGGCCCGGAGCCCAGGGCTGGATGGACACCCACAGGTCG Direct Loss 1 0.438699400483647 1 0.774861693382263 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:581559 chr11:581559 nonsynonymous SNV 0.019 2 21 hm5C_associated_SNPs_1309 0 0 1 0 3 PHRF1 chr11:581492 3'AG 581492 Downstream 68bp
chr11 581559 581559 1 + C T PRAD 581559 + 581539 581579 41 TGTGGCCCGGAGCCCAGGGCCGGATGGACACCCACAGGTCG TGTGGCCCGGAGCCCAGGGCTGGATGGACACCCACAGGTCG Direct Loss 1 0.438699400483647 1 0.774861693382263 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:581559 chr11:581559 nonsynonymous SNV 0.019 2 21 hm5C_associated_SNPs_1309 0 0 1 0 3 PHRF1 chr11:581597 5'GT 581597 Upstream 39bp
chr11 581559 581559 1 + C T PRAD 581559 + 581539 581579 41 TGTGGCCCGGAGCCCAGGGCCGGATGGACACCCACAGGTCG TGTGGCCCGGAGCCCAGGGCTGGATGGACACCCACAGGTCG Direct Loss 1 0.438699400483647 1 0.774861693382263 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:581559 chr11:581559 nonsynonymous SNV 0.019 2 21 hm5C_associated_SNPs_1309 0 0 1 0 3 PHRF1 chr11:581606 5'GT 581606 Upstream 48bp
chr12 56527593 56527593 1 + C T PRAD 56527593 + 56527573 56527613 41 GTGGAATTGGGGAGTCTCCTCTCGACCAGATCCCCCGTCAG GTGGAATTGGGGAGTCTCCTTTCGACCAGATCCCCCGTCAG Direct Loss 1 0.915115767694989 1 0.935418605804443 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56527593 chr12:56527593 nonsynonymous SNV 0.862 3 21 hm5C_associated_SNPs_1313 0 0 1 0 2 ESYT1 chr12:56527565 3'AG 56527565 Downstream 29bp
chr12 56527593 56527593 1 + C T PRAD 56527593 + 56527573 56527613 41 GTGGAATTGGGGAGTCTCCTCTCGACCAGATCCCCCGTCAG GTGGAATTGGGGAGTCTCCTTTCGACCAGATCCCCCGTCAG Direct Loss 1 0.915115767694989 1 0.935418605804443 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56527593 chr12:56527593 nonsynonymous SNV 0.862 3 21 hm5C_associated_SNPs_1313 0 0 1 0 2 ESYT1 chr12:56527657 5'GT 56527657 Upstream 65bp
chr5 74069862 74069862 1 + C T PRAD 74069862 + 74069842 74069882 41 GAGCGAATTGGGCCTTGTGACACAAGGAGGCAAAGTTATTT GAGCGAATTGGGCCTTGTGATACAAGGAGGCAAAGTTATTT Direct Loss 1 0.774441130533483 1 0.27702122926712 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NSA2 ENSG00000164346 CDS Human protein_coding chr5:74069862 chr5:74069862 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_1314 0 0 1 0 1 NSA2 chr5:74069885 5'GT 74069885 Upstream 24bp
chr11 107968473 107968473 1 + C T PRAD 107968473 + 107968453 107968493 41 TTCTCAGTGAACCAGGAGTTCAGTTTAATGTAAGCTCGTTA TTCTCAGTGAACCAGGAGTTTAGTTTAATGTAAGCTCGTTA Direct Loss 1 0.2556388667186 1 0.156720399856567 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL5 ENSG00000166266 CDS Human protein_coding chr11:107968473 chr11:107968473 synonymous SNV . 0 21 hm5C_associated_SNPs_1315 0 0 1 2 1 CUL5 chr11:107968481 5'GT 107968481 Upstream 9bp
chr5 90083965 90083965 1 + C T PRAD 90083965 + 90083945 90083985 41 GACATTGCAGACCCAGTGAGCGGGTTGTTCTATTTTGGAGA GACATTGCAGACCCAGTGAGTGGGTTGTTCTATTTTGGAGA Direct Loss 1 0.174155490764901 1 0.696872591972351 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ADGRV1 ENSG00000164199 CDS Human protein_coding chr5:90083965 chr5:90083965 synonymous SNV . 0 21 hm5C_associated_SNPs_1316 0 0 1 0 1 ADGRV1 chr5:90083888 3'AG 90083888 Downstream 78bp
chr1 110561676 110561676 1 + C T READ 110561676 + 110561656 110561696 41 CTCTCTTACCTTTCCAGGGTCGTCTACTCAATTTGAGCTGC CTCTCTTACCTTTCCAGGGTTGTCTACTCAATTTGAGCTGC Direct Loss 1 0.139739146868883 1 0.0309844017028809 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL1 ENSG00000168710 CDS Human protein_coding chr1:110561676 chr1:110561676 nonsynonymous SNV 0.993 4 21 hm5C_associated_SNPs_1317 0 0 1 0 1 AHCYL1 chr1:110561741 5'GT 110561741 Upstream 66bp
chr3 184104655 184104655 1 + C T READ 184104655 + 184104635 184104675 41 ACGAACGGTGATCTGTGACCCGGTGGTGTGCCCACCGCCCA ACGAACGGTGATCTGTGACCTGGTGGTGTGCCCACCGCCCA Direct Loss 1 0.746877571237389 1 0.540655970573425 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CHRD ENSG00000090539 CDS Human protein_coding chr3:184104655 chr3:184104655 nonsynonymous SNV 0.768 4 21 hm5C_associated_SNPs_1318 0 0 1 0 2 CHRD chr3:184104633 3'AG 184104633 Downstream 23bp
chr3 184104655 184104655 1 + C T READ 184104655 + 184104635 184104675 41 ACGAACGGTGATCTGTGACCCGGTGGTGTGCCCACCGCCCA ACGAACGGTGATCTGTGACCTGGTGGTGTGCCCACCGCCCA Direct Loss 1 0.746877571237389 1 0.540655970573425 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CHRD ENSG00000090539 CDS Human protein_coding chr3:184104655 chr3:184104655 nonsynonymous SNV 0.768 4 21 hm5C_associated_SNPs_1318 0 0 1 0 2 CHRD chr3:184104726 5'GT 184104726 Upstream 72bp
chr16 57144699 57144699 1 + C T READ 57144699 + 57144679 57144719 41 GCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATTG GCCCCAGCAGCGGGGGCAGCTCCCATGGGCCCCCAGTATTG Direct Loss 1 0.729322155180418 1 0.516171157360077 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144699 chr16:57144699 synonymous SNV . 0 21 hm5C_associated_SNPs_1319 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 80bp
chr5 34949743 34949743 1 + C T READ 34949743 + 34949723 34949763 41 GAGAGAAGAGATGGAGAGAGCGAGCACAAATGTGCCAAAAT GAGAGAAGAGATGGAGAGAGTGAGCACAAATGTGCCAAAAT Direct Loss 1 0.475114920434768 1 0.778638780117035 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34949743 chr5:34949743 synonymous SNV . 0 21 hm5C_associated_SNPs_1320 0 0 0 0 2 DNAJC21 chr5:34949648 3'AG 34949648 Downstream 96bp
chr5 34949743 34949743 1 + C T READ 34949743 + 34949723 34949763 41 GAGAGAAGAGATGGAGAGAGCGAGCACAAATGTGCCAAAAT GAGAGAAGAGATGGAGAGAGTGAGCACAAATGTGCCAAAAT Direct Loss 1 0.475114920434768 1 0.778638780117035 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34949743 chr5:34949743 synonymous SNV . 0 21 hm5C_associated_SNPs_1320 0 0 0 0 2 DNAJC21 chr5:34949782 5'GT 34949782 Upstream 40bp
chr17 39978062 39978062 1 + C T READ 39978062 + 39978042 39978082 41 CAAGGATGGCGAGGTCCCTCCGGAGGAGGTGGGTGAAGGTT CAAGGATGGCGAGGTCCCTCTGGAGGAGGTGGGTGAAGGTT Direct Loss 1 0.575076948405305 1 0.858240485191345 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39978062 chr17:39978062 nonsynonymous SNV 0.256 0 21 hm5C_associated_SNPs_1321 0 0 1 0 1 FKBP10 chr17:39978069 5'GT 39978069 Upstream 8bp
chr18 77728106 77728106 1 + C T READ 77728106 + 77728086 77728126 41 TACTGGAAGAAATGGGAAATCGCATTGAGGACTTACAGAAG TACTGGAAGAAATGGGAAATTGCATTGAGGACTTACAGAAG Direct Loss 1 0.644550140641949 1 0.28805810213089 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSBP1L1 ENSG00000226742 CDS Human protein_coding chr18:77728106 chr18:77728106 nonsynonymous SNV 0.647 2 21 hm5C_associated_SNPs_1322 0 0 1 0 1 HSBP1L1 chr18:77728183 5'GT 77728183 Upstream 78bp
chr17 45757956 45757956 1 + C T READ 45757956 + 45757936 45757976 41 ATGAATTGTTAACTGAAGGGCGGAGATCGAAGACTAACAAA ATGAATTGTTAACTGAAGGGTGGAGATCGAAGACTAACAAA Direct Loss 1 0.403506637664362 1 0.430103600025177 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45757956 chr17:45757956 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_1323 0 0 1 0 2 KPNB1 chr17:45757874 3'AG 45757874 Downstream 83bp
chr17 45757956 45757956 1 + C T READ 45757956 + 45757936 45757976 41 ATGAATTGTTAACTGAAGGGCGGAGATCGAAGACTAACAAA ATGAATTGTTAACTGAAGGGTGGAGATCGAAGACTAACAAA Direct Loss 1 0.403506637664362 1 0.430103600025177 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45757956 chr17:45757956 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_1323 0 0 1 0 2 KPNB1 chr17:45758035 5'GT 45758035 Upstream 80bp
chr5 141524180 141524180 1 + C T READ 141524180 + 141524160 141524200 41 TTATCAATTATGCAAAAGTTCGGAAGATGCCAGAAACTTTC TTATCAATTATGCAAAAGTTTGGAAGATGCCAGAAACTTTC Direct Loss 1 0.824331971629749 1 0.500275254249573 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control NDFIP1 ENSG00000131507 CDS Human protein_coding chr5:141524180 chr5:141524180 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1324 0 0 1 0 2 NDFIP1 chr5:141524136 3'AG 141524136 Downstream 45bp
chr5 141524180 141524180 1 + C T READ 141524180 + 141524160 141524200 41 TTATCAATTATGCAAAAGTTCGGAAGATGCCAGAAACTTTC TTATCAATTATGCAAAAGTTTGGAAGATGCCAGAAACTTTC Direct Loss 1 0.824331971629749 1 0.500275254249573 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control NDFIP1 ENSG00000131507 CDS Human protein_coding chr5:141524180 chr5:141524180 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1324 0 0 1 0 2 NDFIP1 chr5:141524241 5'GT 141524241 Upstream 62bp
chr2 11312065 11312065 1 + C A READ 11312065 + 11312045 11312085 41 AAACAGAATCTATGTACTTTCATCAGCGCGGCCAGTAAGTT AAACAGAATCTATGTACTTTAATCAGCGCGGCCAGTAAGTT Direct Loss 1 0.576406756861206 1 0.0950253307819366 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11312065 chr2:11312065 nonsynonymous SNV 0.413 1 21 hm5C_associated_SNPs_1325 0 0 0 0 1 PQLC3 chr2:11312051 3'AG 11312051 Downstream 15bp
chr17 20163528 20163528 1 + C T READ 20163528 + 20163508 20163548 41 GGAAAGAAAAGACCCTCTGGCAGCCTTGGCCCGGGAATACG GGAAAGAAAAGACCCTCTGGTAGCCTTGGCCCGGGAATACG Direct Loss 1 0.257360711224748 1 0.0850450694561005 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20163528 chr17:20163528 nonsynonymous SNV 0.986 1 21 hm5C_associated_SNPs_1326 0 0 1 0 1 SPECC1 chr17:20163607 5'GT 20163607 Upstream 80bp
chr1 10221247 10221247 1 + C T READ 10221247 + 10221227 10221267 41 AAACATGTTGATAAACGACACGACGTTTTTGCTCGATGAAA AAACATGTTGATAAACGACATGACGTTTTTGCTCGATGAAA Direct Loss 1 0.329368384836114 1 0.0386607646942139 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10221247 chr1:10221247 nonsynonymous SNV 0.922 4 21 hm5C_associated_SNPs_1328 0 0 1 0 2 UBE4B chr1:10221200 3'AG 10221200 Downstream 48bp
chr1 10221247 10221247 1 + C T READ 10221247 + 10221227 10221267 41 AAACATGTTGATAAACGACACGACGTTTTTGCTCGATGAAA AAACATGTTGATAAACGACATGACGTTTTTGCTCGATGAAA Direct Loss 1 0.329368384836114 1 0.0386607646942139 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10221247 chr1:10221247 nonsynonymous SNV 0.922 4 21 hm5C_associated_SNPs_1328 0 0 1 0 2 UBE4B chr1:10221344 5'GT 10221344 Upstream 98bp
chr1 171763629 171763629 1 + C G SARC 171763629 + 171763609 171763649 41 CCCAGCATTTGTGGAGCAATCTTTTCTACAGAAGGTTAAAA CCCAGCATTTGTGGAGCAATGTTTTCTACAGAAGGTTAAAA Direct Loss 1 0.157840957449444 1 0.0664485692977905 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171763629 chr1:171763629 nonsynonymous SNV 0.712 0 21 hm5C_associated_SNPs_1330 0 0 1 0 2 METTL13 chr1:171763536 3'AG 171763536 Downstream 94bp
chr1 171763629 171763629 1 + C G SARC 171763629 + 171763609 171763649 41 CCCAGCATTTGTGGAGCAATCTTTTCTACAGAAGGTTAAAA CCCAGCATTTGTGGAGCAATGTTTTCTACAGAAGGTTAAAA Direct Loss 1 0.157840957449444 1 0.0664485692977905 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171763629 chr1:171763629 nonsynonymous SNV 0.712 0 21 hm5C_associated_SNPs_1330 0 0 1 0 2 METTL13 chr1:171763667 5'GT 171763667 Upstream 39bp
chr7 142459862 142459862 1 + C A SARC 142459862 + 142459842 142459882 41 CTCATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGA CTCATCTCTGGCTGGGGCAAAACTGCGAGCTCTGGCGGTGA Direct Loss 1 0.353648749292257 1 0.268477737903595 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459862 chr7:142459862 nonsynonymous SNV 0.763 5 21 hm5C_associated_SNPs_1331 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 17bp
chr16 56362604 56362604 1 + C T SARC 56362604 + 56362584 56362624 41 AGACACCGAGCCCTTCTCTGCAGAGCTGCTTTCTGCCATGA AGACACCGAGCCCTTCTCTGTAGAGCTGCTTTCTGCCATGA Direct Loss 1 0.485885414480482 1 0.680529356002808 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control GNAO1 ENSG00000087258 CDS Human protein_coding chr16:56362604 chr16:56362604 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1333 0 0 1 0 2 GNAO1 chr16:56362543 3'AG 56362543 Downstream 62bp
chr16 56362604 56362604 1 + C T SARC 56362604 + 56362584 56362624 41 AGACACCGAGCCCTTCTCTGCAGAGCTGCTTTCTGCCATGA AGACACCGAGCCCTTCTCTGTAGAGCTGCTTTCTGCCATGA Direct Loss 1 0.485885414480482 1 0.680529356002808 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control GNAO1 ENSG00000087258 CDS Human protein_coding chr16:56362604 chr16:56362604 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1333 0 0 1 0 2 GNAO1 chr16:56362703 5'GT 56362703 Upstream 100bp
chr11 57575904 57575904 1 + C G SARC 57575904 + 57575884 57575924 41 CTCTGCGTCAAGAGAAGGCTCTTTCTGCCATAGCTGACCTC CTCTGCGTCAAGAGAAGGCTGTTTCTGCCATAGCTGACCTC Direct Loss 1 0.0875902455760139 1 0.0825532674789429 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57575904 chr11:57575904 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1334 0 0 1 0 1 CTNND1 chr11:57575862 3'AG 57575862 Downstream 43bp
chr2 27900703 27900703 1 + C A SARC 27900703 + 27900683 27900723 41 TGTCCCGGAAGAAACTTCACCTGAGAACTTTTGAACTGAGG TGTCCCGGAAGAAACTTCACATGAGAACTTTTGAACTGAGG Direct Loss 1 0.264613948357196 1 0.348716080188751 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27900703 chr2:27900703 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1335 0 0 1 0 2 SLC4A1AP chr2:27900605 3'AG 27900605 Downstream 99bp
chr2 27900703 27900703 1 + C A SARC 27900703 + 27900683 27900723 41 TGTCCCGGAAGAAACTTCACCTGAGAACTTTTGAACTGAGG TGTCCCGGAAGAAACTTCACATGAGAACTTTTGAACTGAGG Direct Loss 1 0.264613948357196 1 0.348716080188751 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27900703 chr2:27900703 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1335 0 0 1 0 2 SLC4A1AP chr2:27900791 5'GT 27900791 Upstream 89bp
chr1 186106679 186106679 1 + C T SARC 186106679 + 186106659 186106699 41 TGGAGAGCCTGCAGTGTCACCTGTGGAAAAGGCATCCAAAA TGGAGAGCCTGCAGTGTCACTTGTGGAAAAGGCATCCAAAA Direct Loss 1 0.165036300981613 1 0.253942131996155 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HMCN1 ENSG00000143341 CDS Human protein_coding chr1:186106679 chr1:186106679 synonymous SNV . 0 21 hm5C_associated_SNPs_1336 0 0 0 0 1 HMCN1 chr1:186106630 3'AG 186106630 Downstream 50bp
chr12 95693942 95693942 1 + C T SARC 95693942 + 95693922 95693962 41 TCTTTTTTTTTATTTGAAGCCGTGTTGAAATCCTTGTCTCC TCTTTTTTTTTATTTGAAGCTGTGTTGAAATCCTTGTCTCC Direct Loss 1 0.248566763516695 1 0.481093972921371 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VEZT ENSG00000028203 CDS Human protein_coding chr12:95693942 chr12:95693942 synonymous SNV . 0 21 hm5C_associated_SNPs_1339 0 0 1 3 1 VEZT chr12:95693941 3'AG 95693941 Downstream 2bp
chr2 10925152 10925152 1 - G T SARC 10925152 - 10925132 10925172 41 GTCATTTTTCCCTAAGGGAGCTCTCTTTTGGGCGTGGCTCC GTCATTTTTCCCTAAGGGAGATCTCTTTTGGGCGTGGCTCC Direct Loss 1 0.107441410278095 1 0.242528110742569 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PDIA6 ENSG00000143870 CDS Human protein_coding chr2:10925152 chr2:10925152 nonsynonymous SNV 0.735 3 21 hm5C_associated_SNPs_1340 0 0 1 0 2 PDIA6 chr2:10925060 5'GT 10925060 Upstream 93bp
chr2 10925152 10925152 1 - G T SARC 10925152 - 10925132 10925172 41 GTCATTTTTCCCTAAGGGAGCTCTCTTTTGGGCGTGGCTCC GTCATTTTTCCCTAAGGGAGATCTCTTTTGGGCGTGGCTCC Direct Loss 1 0.107441410278095 1 0.242528110742569 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PDIA6 ENSG00000143870 CDS Human protein_coding chr2:10925152 chr2:10925152 nonsynonymous SNV 0.735 3 21 hm5C_associated_SNPs_1340 0 0 1 0 2 PDIA6 chr2:10925156 3'AG 10925156 Downstream 5bp
chr7 142458486 142458486 1 + C T SARC 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTACCAGGTGTCCTTGAATTCTGGCTACCACTTC Direct Loss 1 0.723466756578657 1 0.189136326313019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458486 synonymous SNV . 0 21 hm5C_associated_SNPs_1341 1 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 81bp
chr7 142458486 142458486 1 + C T SARC 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTACCAGGTGTCCTTGAATTCTGGCTACCACTTC Direct Loss 1 0.723466756578657 1 0.189136326313019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458486 synonymous SNV . 0 21 hm5C_associated_SNPs_1341 1 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 7bp
chr7 142458486 142458486 1 + C T SARC 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTACCAGGTGTCCTTGAATTCTGGCTACCACTTC Direct Loss 1 0.723466756578657 1 0.189136326313019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458486 synonymous SNV . 0 21 hm5C_associated_SNPs_1341 1 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 80bp
chr7 142459626 142459626 1 + C T SARC 142459626 + 142459606 142459646 41 TGCCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGA TGCCTGCCCTGCCCATCAGCTGCATCCAGGTGAGACTGGGA Direct Loss 1 0.329184290045433 1 0.171513319015503 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459626 chr7:142459626 nonsynonymous SNV 0.585 3 21 hm5C_associated_SNPs_1343 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 2bp
chr12 73012771 73012771 1 + C T SKCM 73012771 + 73012751 73012791 41 CTGCCAGCCGAGCTCTTTATCCTCTAGATAAATTACTGGAC CTGCCAGCCGAGCTCTTTATTCTCTAGATAAATTACTGGAC Direct Loss 1 0.108424638450413 1 0.350732713937759 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRHDE ENSG00000072657 CDS Human protein_coding chr12:73012771 chr12:73012771 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_1344 0 0 0 0 1 TRHDE chr12:73012818 5'GT 73012818 Upstream 48bp
chr12 62797974 62797974 1 + C T SKCM 62797974 + 62797954 62797994 41 ACATCCTTTGTTTTGACAGTCCAAAGCAGCATATGTACTCT ACATCCTTTGTTTTGACAGTTCAAAGCAGCATATGTACTCT Direct Loss 1 0.213098413521398 1 0.259328633546829 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP15 ENSG00000135655 CDS Human protein_coding chr12:62797974 chr12:62797974 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_1345 0 0 0 0 1 USP15 chr12:62797973 3'AG 62797973 Downstream 2bp
chr1 22336293 22336293 1 + C T SKCM 22336293 + 22336273 22336313 41 TCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGTGTT TCTGCCTTTGGCTGCAACTTTATCTGGAAGCCCACGGTGTT Direct Loss 1 0.312443556842749 1 0.722755253314972 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336293 chr1:22336293 synonymous SNV . 0 21 hm5C_associated_SNPs_1346 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 58bp
chr7 142457353 142457353 1 + C T SKCM 142457353 + 142457333 142457373 41 ACCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGC ACCATGAATCCACTCCTGATTCTTACCTTTGTGGCAGCTGC Direct Loss 1 0.070710534933793 1 0.0438064932823181 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457353 chr7:142457353 synonymous SNV . 0 21 hm5C_associated_SNPs_1348 0 0 0 1 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 23bp
chr5 14482854 14482854 1 + C T SKCM 14482854 + 14482834 14482874 41 AAAGAAGGGCTTCTCCATGCCGGGATTCCTGTTTAAGAACA AAAGAAGGGCTTCTCCATGCTGGGATTCCTGTTTAAGAACA Direct Loss 1 0.566979600148413 1 0.691770434379578 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14482854 chr5:14482854 nonsynonymous SNV 0.981 3 21 hm5C_associated_SNPs_1349 0 0 1 0 1 TRIO chr5:14482882 5'GT 14482882 Upstream 29bp
chr2 70096880 70096880 1 + C T SKCM 70096880 + 70096860 70096900 41 CGTTGGACAGGTTTTAACTTCGGCTTCGACCTACTTGTAAC CGTTGGACAGGTTTTAACTTTGGCTTCGACCTACTTGTAAC Direct Loss 1 0.579293742566328 1 0.149862945079803 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GMCL1 ENSG00000087338 CDS Human protein_coding chr2:70096880 chr2:70096880 synonymous SNV . 0 21 hm5C_associated_SNPs_1350 0 0 1 0 1 GMCL1 chr2:70096851 3'AG 70096851 Downstream 30bp
chr6 76558070 76558070 1 + C T SKCM 76558070 + 76558050 76558090 41 TGTCTTCTTGTTTTGTAGTACCTTAAGGCAGGTTCTATGAA TGTCTTCTTGTTTTGTAGTATCTTAAGGCAGGTTCTATGAA Direct Loss 1 0.0259584204862404 1 0.0588300824165344 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MYO6 ENSG00000196586 CDS Human protein_coding chr6:76558070 chr6:76558070 synonymous SNV . 0 21 hm5C_associated_SNPs_1351 0 0 1 0 1 MYO6 chr6:76558068 3'AG 76558068 Downstream 3bp
chr12 123102893 123102893 1 + C T SKCM 123102893 + 123102873 123102913 41 TGGACTTGTTTTCACAGGTTCCCTACTTCAGCAAAGCGTGG TGGACTTGTTTTCACAGGTTTCCTACTTCAGCAAAGCGTGG Direct Loss 1 0.0683465680752031 1 0.0560208261013031 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123102893 chr12:123102893 nonsynonymous SNV 0.733 2 21 hm5C_associated_SNPs_1352 0 0 1 0 2 KNTC1 chr12:123102890 3'AG 123102890 Downstream 4bp
chr12 123102893 123102893 1 + C T SKCM 123102893 + 123102873 123102913 41 TGGACTTGTTTTCACAGGTTCCCTACTTCAGCAAAGCGTGG TGGACTTGTTTTCACAGGTTTCCTACTTCAGCAAAGCGTGG Direct Loss 1 0.0683465680752031 1 0.0560208261013031 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123102893 chr12:123102893 nonsynonymous SNV 0.733 2 21 hm5C_associated_SNPs_1352 0 0 1 0 2 KNTC1 chr12:123102944 5'GT 123102944 Upstream 52bp
chr1 32620246 32620246 1 + C T SKCM 32620246 + 32620226 32620266 41 GAAGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGA GAAGAGCTATAAGAACAATGTTCTAAACCCTGAAGAAATGA Direct Loss 1 0.354181946950104 1 0.08283531665802 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620246 chr1:32620246 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1353 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 58bp
chr1 32620246 32620246 1 + C T SKCM 32620246 + 32620226 32620266 41 GAAGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGA GAAGAGCTATAAGAACAATGTTCTAAACCCTGAAGAAATGA Direct Loss 1 0.354181946950104 1 0.08283531665802 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620246 chr1:32620246 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1353 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 77bp
chr11 67052452 67052452 1 + C T SKCM 67052452 + 67052432 67052472 41 GGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGGG GGCGGGGCGAGGGCGAGGCCTCGGTAAGGAGCCCGTGCGGG Direct Loss 1 0.487403444248833 1 0.841025352478027 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052452 chr11:67052452 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_1354 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 3bp
chr6 7594068 7594068 1 + C A SKCM 7594068 + 7594048 7594088 41 TTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGTACCATA TTGAGGAAAATGGGCTATACAAAAGAAGAAGAGGTACCATA Direct Loss 1 0.633762706511742 1 0.456301480531693 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7594068 chr6:7594068 synonymous SNV . 0 21 hm5C_associated_SNPs_1355 0 0 1 2 1 SNRNP48 chr6:7594080 5'GT 7594080 Upstream 13bp
chr19 49993749 49993749 1 + C T SKCM 49993749 + 49993729 49993769 41 TAGTGAAGTACCTGGCTTTCCTCCGCAAGCGGATGAACACC TAGTGAAGTACCTGGCTTTCTTCCGCAAGCGGATGAACACC Direct Loss 1 0.80149062774132 1 0.205606013536453 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993749 chr19:49993749 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1356 0 0 1 0 2 RPL13A chr19:49993732 3'AG 49993732 Downstream 18bp
chr19 49993749 49993749 1 + C T SKCM 49993749 + 49993729 49993769 41 TAGTGAAGTACCTGGCTTTCCTCCGCAAGCGGATGAACACC TAGTGAAGTACCTGGCTTTCTTCCGCAAGCGGATGAACACC Direct Loss 1 0.80149062774132 1 0.205606013536453 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993749 chr19:49993749 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1356 0 0 1 0 2 RPL13A chr19:49993833 5'GT 49993833 Upstream 85bp
chr7 142458473 142458473 1 + C T SKCM 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTCCCTTACCAGGTGTCCCTGAATTC Direct Loss 1 0.155532069495487 1 0.0454511344432831 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458473 synonymous SNV . 0 21 hm5C_associated_SNPs_1357 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 68bp
chr7 142458473 142458473 1 + C T SKCM 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTCCCTTACCAGGTGTCCCTGAATTC Direct Loss 1 0.155532069495487 1 0.0454511344432831 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458473 synonymous SNV . 0 21 hm5C_associated_SNPs_1357 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 93bp
chr7 142458472 142458472 1 + C T SKCM 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTCCTCTACCAGGTGTCCCTGAATT Direct Loss 1 0.016369738305966 1 0.362387418746948 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458472 nonsynonymous SNV 0.950 5 21 hm5C_associated_SNPs_1358 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 67bp
chr7 142458472 142458472 1 + C T SKCM 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTCCTCTACCAGGTGTCCCTGAATT Direct Loss 1 0.016369738305966 1 0.362387418746948 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458472 nonsynonymous SNV 0.950 5 21 hm5C_associated_SNPs_1358 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 94bp
chr16 29842365 29842365 1 + C T SKCM 29842365 + 29842345 29842385 41 GGCTGGCCCAGGACCCCTTCCCCCTGTACCCAGGGGAGGTG GGCTGGCCCAGGACCCCTTCTCCCTGTACCCAGGGGAGGTG Direct Loss 1 0.265157128897537 1 0.214602172374725 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29842365 chr16:29842365 nonsynonymous SNV 0.985 4 21 hm5C_associated_SNPs_1359 0 0 0 0 1 MVP chr16:29842394 5'GT 29842394 Upstream 30bp
chr5 179150759 179150759 1 + C T SKCM 179150759 + 179150739 179150779 41 CTTCCTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAA CTTCCTGTGTTCCTGGTTATTCTCTTCTGCTGTTCTGGAAA Direct Loss 1 0.140544539078258 1 0.0600076019763947 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179150759 chr5:179150759 synonymous SNV . 0 21 hm5C_associated_SNPs_1361 0 0 1 0 2 CANX chr5:179150661 3'AG 179150661 Downstream 99bp
chr5 179150759 179150759 1 + C T SKCM 179150759 + 179150739 179150779 41 CTTCCTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAA CTTCCTGTGTTCCTGGTTATTCTCTTCTGCTGTTCTGGAAA Direct Loss 1 0.140544539078258 1 0.0600076019763947 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179150759 chr5:179150759 synonymous SNV . 0 21 hm5C_associated_SNPs_1361 0 0 1 0 2 CANX chr5:179150780 5'GT 179150780 Upstream 22bp
chr11 57373926 57373926 1 + C T SKCM 57373926 + 57373906 57373946 41 CAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAG CAAGAAAACCAGAATGGAACTCTTTCACTTCAAAAACTCAG Direct Loss 1 0.0124211618461275 1 0.0722890496253967 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373926 chr11:57373926 nonsynonymous SNV 0.005 1 21 hm5C_associated_SNPs_1363 0 0 0 0 2 SERPING1 chr11:57373881 3'AG 57373881 Downstream 46bp
chr11 57373926 57373926 1 + C T SKCM 57373926 + 57373906 57373946 41 CAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAG CAAGAAAACCAGAATGGAACTCTTTCACTTCAAAAACTCAG Direct Loss 1 0.0124211618461275 1 0.0722890496253967 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373926 chr11:57373926 nonsynonymous SNV 0.005 1 21 hm5C_associated_SNPs_1363 0 0 0 0 2 SERPING1 chr11:57374020 5'GT 57374020 Upstream 95bp
chr11 65481133 65481133 1 + C T SKCM 65481133 + 65481113 65481153 41 CAGCCCCGGCCTCGGTTTTTCCCCAGGTGAGTTCCCCAAAC CAGCCCCGGCCTCGGTTTTTTCCCAGGTGAGTTCCCCAAAC Direct Loss 1 0.734217297502216 1 0.735866963863373 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KAT5 ENSG00000172977 CDS Human protein_coding chr11:65481133 chr11:65481133 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_1365 0 0 1 0 2 KAT5 chr11:65481064 3'AG 65481064 Downstream 70bp
chr11 65481133 65481133 1 + C T SKCM 65481133 + 65481113 65481153 41 CAGCCCCGGCCTCGGTTTTTCCCCAGGTGAGTTCCCCAAAC CAGCCCCGGCCTCGGTTTTTTCCCAGGTGAGTTCCCCAAAC Direct Loss 1 0.734217297502216 1 0.735866963863373 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KAT5 ENSG00000172977 CDS Human protein_coding chr11:65481133 chr11:65481133 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_1365 0 0 1 0 2 KAT5 chr11:65481138 5'GT 65481138 Upstream 6bp
chr16 29811295 29811295 1 + C T SKCM 29811295 + 29811275 29811315 41 CCACCAGAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGGA CCACCAGAGGCAAAGAGAGCTCGAGGCCCTGAGGAAGAGGA Direct Loss 1 0.223624593943409 1 0.744102120399475 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811295 chr16:29811295 synonymous SNV . 0 21 hm5C_associated_SNPs_1367 0 0 1 0 2 KIF22 chr16:29811234 3'AG 29811234 Downstream 62bp
chr16 29811295 29811295 1 + C T SKCM 29811295 + 29811275 29811315 41 CCACCAGAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGGA CCACCAGAGGCAAAGAGAGCTCGAGGCCCTGAGGAAGAGGA Direct Loss 1 0.223624593943409 1 0.744102120399475 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811295 chr16:29811295 synonymous SNV . 0 21 hm5C_associated_SNPs_1367 0 0 1 0 2 KIF22 chr16:29811369 5'GT 29811369 Upstream 75bp
chr5 156816259 156816259 1 + C T SKCM 156816259 + 156816239 156816279 41 CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTGAC CGGCTGTGCTGTGGCCTGTCTATGTTCGAGGTCATCCTGAC Direct Loss 1 0.307444983240703 1 0.733509361743927 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816259 chr5:156816259 synonymous SNV . 0 21 hm5C_associated_SNPs_1368 0 0 1 0 1 CYFIP2 chr5:156816197 3'AG 156816197 Downstream 63bp
chr6 107100110 107100110 1 + C T SKCM 107100110 + 107100090 107100130 41 AGGATCAGATACAGGAGGATCGACCAGAAATCCTGCTGCCC AGGATCAGATACAGGAGGATTGACCAGAAATCCTGCTGCCC Direct Loss 1 0.355240859200967 1 0.134426027536392 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control QRSL1 ENSG00000130348 CDS Human protein_coding chr6:107100110 chr6:107100110 nonsynonymous SNV 0.992 5 21 hm5C_associated_SNPs_1369 0 0 1 0 1 QRSL1 chr6:107100084 3'AG 107100084 Downstream 27bp
chr19 46878977 46878977 1 + C T SKCM 46878977 + 46878957 46878997 41 GGCGACGAGCACAAGCGCTCCGTGGTGGACTCGCTGGACAT GGCGACGAGCACAAGCGCTCTGTGGTGGACTCGCTGGACAT Direct Loss 1 0.528792811875334 1 0.49897888302803 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46878977 chr19:46878977 synonymous SNV . 0 21 hm5C_associated_SNPs_1371 0 0 1 0 1 PPP5C chr19:46879008 5'GT 46879008 Upstream 32bp
chr4 166405684 166405684 1 + C T SKCM 166405684 + 166405664 166405704 41 ACCCCAATCGGCCACCATGTCGCAAGAATGATGATGACAGC ACCCCAATCGGCCACCATGTTGCAAGAATGATGATGACAGC Direct Loss 1 0.883162954284958 1 0.505343019962311 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CPE ENSG00000109472 CDS Human protein_coding chr4:166405684 chr4:166405684 nonsynonymous SNV 0.921 4 21 hm5C_associated_SNPs_1373 0 0 1 0 1 CPE chr4:166405756 5'GT 166405756 Upstream 73bp
chr3 47374698 47374698 1 + C T SKCM 47374698 + 47374678 47374718 41 ACGACCGGGAGCAGAGGGGTCCCTACCTGCCTGAGCTGCTG ACGACCGGGAGCAGAGGGGTTCCTACCTGCCTGAGCTGCTG Direct Loss 1 0.329480394613842 1 0.115654647350311 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47374698 chr3:47374698 nonsynonymous SNV 0.991 0 21 hm5C_associated_SNPs_1374 0 0 1 0 1 KLHL18 chr3:47374647 3'AG 47374647 Downstream 52bp
chr12 46215264 46215264 1 + C T SKCM 46215264 + 46215244 46215284 41 GAGAAGACTGATAGAGACTTCGTTAAGGTAAATCATTTTAA GAGAAGACTGATAGAGACTTTGTTAAGGTAAATCATTTTAA Direct Loss 1 0.103776908832986 1 0.245442122220993 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID2 ENSG00000189079 CDS Human protein_coding chr12:46215264 chr12:46215264 synonymous SNV . 0 21 hm5C_associated_SNPs_1375 0 0 1 0 2 ARID2 chr12:46215203 3'AG 46215203 Downstream 62bp
chr12 46215264 46215264 1 + C T SKCM 46215264 + 46215244 46215284 41 GAGAAGACTGATAGAGACTTCGTTAAGGTAAATCATTTTAA GAGAAGACTGATAGAGACTTTGTTAAGGTAAATCATTTTAA Direct Loss 1 0.103776908832986 1 0.245442122220993 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID2 ENSG00000189079 CDS Human protein_coding chr12:46215264 chr12:46215264 synonymous SNV . 0 21 hm5C_associated_SNPs_1375 0 0 1 0 2 ARID2 chr12:46215270 5'GT 46215270 Upstream 7bp
chr7 142458565 142458565 1 + C T SKCM 142458565 + 142458545 142458585 41 AGCAGGCCACTGCTACAAGTCGTAAGTGTGGGGCCCCCGAC AGCAGGCCACTGCTACAAGTTGTAAGTGTGGGGCCCCCGAC Direct Loss 1 0.747331605997486 1 0.450205326080322 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458565 chr7:142458565 nonsynonymous SNV 0.553 2 21 hm5C_associated_SNPs_1377 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 86bp
chr7 142458565 142458565 1 + C T SKCM 142458565 + 142458545 142458585 41 AGCAGGCCACTGCTACAAGTCGTAAGTGTGGGGCCCCCGAC AGCAGGCCACTGCTACAAGTTGTAAGTGTGGGGCCCCCGAC Direct Loss 1 0.747331605997486 1 0.450205326080322 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458565 chr7:142458565 nonsynonymous SNV 0.553 2 21 hm5C_associated_SNPs_1377 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 1bp
chr11 20077463 20077463 1 + C T SKCM 20077463 + 20077443 20077483 41 CTGGATGAGAAGAGCAGAACCATGAGCCGTTCAGGCTCATT CTGGATGAGAAGAGCAGAACTATGAGCCGTTCAGGCTCATT Direct Loss 1 0.387545592901967 1 0.315952897071838 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74775;RNA-BisSeq;SNB19;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:20077463 chr11:20077463 synonymous SNV . 0 21 hm5C_associated_SNPs_1378 0 0 0 0 1 NAV2 chr11:20077503 5'GT 20077503 Upstream 41bp
chr21 48068504 48068504 1 + C T SKCM 48068504 + 48068484 48068524 41 ACTGGGATCATCAGTCTCTTCTGTGCACACTATGCGCGGCC ACTGGGATCATCAGTCTCTTTTGTGCACACTATGCGCGGCC Direct Loss 1 0.726488409469101 1 0.68402487039566 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48068504 chr21:48068504 synonymous SNV 0.885 0 21 hm5C_associated_SNPs_1379 0 0 1 0 1 PRMT2 chr21:48068531 5'GT 48068531 Upstream 28bp
chr21 38558073 38558073 1 + C T SKCM 38558073 + 38558053 38558093 41 CTGGATCAGTCCCTTGAAATCAGGCAAATTAAGCTTAAATT CTGGATCAGTCCCTTGAAATTAGGCAAATTAAGCTTAAATT Direct Loss 1 0.277924941515754 1 0.849239468574524 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC3 ENSG00000182670 CDS Human protein_coding chr21:38558073 chr21:38558073 synonymous SNV . 0 21 hm5C_associated_SNPs_1380 0 0 1 0 1 TTC3 chr21:38558007 3'AG 38558007 Downstream 67bp
chr2 189458714 189458714 1 + C T SKCM 189458714 + 189458694 189458734 41 GAAGGCACAGTATTTTGTCTCGACCCGTTAGACAGTAGGTG GAAGGCACAGTATTTTGTCTTGACCCGTTAGACAGTAGGTG Direct Loss 1 0.314051591148844 1 0.0838554799556732 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GULP1 ENSG00000144366 CDS Human protein_coding chr2:189458714 chr2:189458714 synonymous SNV . 0 21 hm5C_associated_SNPs_1382 0 0 1 0 1 GULP1 chr2:189458667 3'AG 189458667 Downstream 48bp
chr1 162745469 162745469 1 + C T SKCM 162745469 + 162745449 162745489 41 TTTCTTAAGGAGATAAAGATCATGTCTCGGCTCAAGGACCC TTTCTTAAGGAGATAAAGATTATGTCTCGGCTCAAGGACCC Direct Loss 1 0.281085975250743 1 0.137236893177032 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162745469 chr1:162745469 synonymous SNV . 0 21 hm5C_associated_SNPs_1383 0 0 0 0 1 DDR2 chr1:162745442 3'AG 162745442 Downstream 28bp
chr13 27216450 27216450 1 + C A SKCM 27216450 + 27216430 27216470 41 TTGAGCCCCGGCACTTGTGCCGGGGAGCTCTGCCTGAAGGG TTGAGCCCCGGCACTTGTGCAGGGGAGCTCTGCCTGAAGGG Direct Loss 1 0.764197671648482 1 0.850250720977783 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216450 chr13:27216450 synonymous SNV . 0 21 hm5C_associated_SNPs_1384 0 0 1 0 2 WASF3 chr13:27216398 3'AG 27216398 Downstream 53bp
chr13 27216450 27216450 1 + C A SKCM 27216450 + 27216430 27216470 41 TTGAGCCCCGGCACTTGTGCCGGGGAGCTCTGCCTGAAGGG TTGAGCCCCGGCACTTGTGCAGGGGAGCTCTGCCTGAAGGG Direct Loss 1 0.764197671648482 1 0.850250720977783 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216450 chr13:27216450 synonymous SNV . 0 21 hm5C_associated_SNPs_1384 0 0 1 0 2 WASF3 chr13:27216540 5'GT 27216540 Upstream 91bp
chr7 5643510 5643510 1 + C T SKCM 5643510 + 5643490 5643530 41 ACAGGGGACTCAGAGCTCTTCCTCATGAAGCTCATCAACCG ACAGGGGACTCAGAGCTCTTTCTCATGAAGCTCATCAACCG Direct Loss 1 0.347939068656125 1 0.0882543325424194 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5643510 chr7:5643510 synonymous SNV . 0 21 hm5C_associated_SNPs_1385 0 0 1 0 1 FSCN1 chr7:5643494 3'AG 5643494 Downstream 17bp
chrX 107842027 107842027 1 + C T SKCM 107842027 + 107842007 107842047 41 CCTATGGGTCCCCCTGGTTTCGGCCCTCCAGGCCCAGTAGG CCTATGGGTCCCCCTGGTTTTGGCCCTCCAGGCCCAGTAGG Direct Loss 1 0.476949848769075 1 0.208345979452133 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107842027 chrX:107842027 synonymous SNV . 0 21 hm5C_associated_SNPs_1386 0 0 1 0 1 COL4A5 chrX:107842100 5'GT 107842100 Upstream 74bp
chr7 142459787 142459787 1 + C T SKCM 142459787 + 142459767 142459807 41 TCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCT TCACGTGCAGTAATCAACGCTCGCGTGTCCACCATCTCTCT Direct Loss 1 0.514478198262635 1 0.113549590110779 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459787 chr7:142459787 synonymous SNV . 0 21 hm5C_associated_SNPs_1387 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 92bp
chr1 201966479 201966479 1 + C T SKCM 201966479 + 201966459 201966499 41 CTTCATGCCACCGTCCTTTCCATTTGGAGGAATGGAGAACC CTTCATGCCACCGTCCTTTCTATTTGGAGGAATGGAGAACC Direct Loss 1 0.165210228505606 1 0.183404684066772 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNPEP ENSG00000176393 CDS Human protein_coding chr1:201966479 chr1:201966479 nonsynonymous SNV 0.989 4 21 hm5C_associated_SNPs_1388 0 0 1 0 1 RNPEP chr1:201966447 3'AG 201966447 Downstream 33bp
chr1 155691323 155691323 1 + C T SKCM 155691323 + 155691303 155691343 41 CCTAGGCCAAGCATGGGGATCAGCACGAGGGTCAGCACTAC CCTAGGCCAAGCATGGGGATTAGCACGAGGGTCAGCACTAC Direct Loss 1 0.828312312529778 1 0.28041535615921 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DAP3 ENSG00000132676 CDS Human protein_coding chr1:155691323 chr1:155691323 stopgain 0.958 1 21 hm5C_associated_SNPs_1389 0 0 1 0 2 DAP3 chr1:155691308 3'AG 155691308 Downstream 16bp
chr1 155691323 155691323 1 + C T SKCM 155691323 + 155691303 155691343 41 CCTAGGCCAAGCATGGGGATCAGCACGAGGGTCAGCACTAC CCTAGGCCAAGCATGGGGATTAGCACGAGGGTCAGCACTAC Direct Loss 1 0.828312312529778 1 0.28041535615921 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DAP3 ENSG00000132676 CDS Human protein_coding chr1:155691323 chr1:155691323 stopgain 0.958 1 21 hm5C_associated_SNPs_1389 0 0 1 0 2 DAP3 chr1:155691409 5'GT 155691409 Upstream 87bp
chr4 141300277 141300277 1 + C T SKCM 141300277 + 141300257 141300297 41 GAATTTTTCTTATTGTAGACCATTCCTCAAGAATTTTGTAT GAATTTTTCTTATTGTAGACTATTCCTCAAGAATTTTGTAT Direct Loss 1 0.0253299488124901 1 0.0668282210826874 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCOC ENSG00000153130 CDS Human protein_coding chr4:141300277 chr4:141300277 nonsynonymous SNV 0.807 0 21 hm5C_associated_SNPs_1390 0 0 1 0 2 SCOC chr4:141300275 3'AG 141300275 Downstream 3bp
chr4 141300277 141300277 1 + C T SKCM 141300277 + 141300257 141300297 41 GAATTTTTCTTATTGTAGACCATTCCTCAAGAATTTTGTAT GAATTTTTCTTATTGTAGACTATTCCTCAAGAATTTTGTAT Direct Loss 1 0.0253299488124901 1 0.0668282210826874 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCOC ENSG00000153130 CDS Human protein_coding chr4:141300277 chr4:141300277 nonsynonymous SNV 0.807 0 21 hm5C_associated_SNPs_1390 0 0 1 0 2 SCOC chr4:141300346 5'GT 141300346 Upstream 70bp
chr8 48874104 48874104 1 + C T SKCM 48874104 + 48874084 48874124 41 GAGGATGCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA GAGGATGCCAGGTCATCTCCTTCTCAGAGACGTAGAGGCGA Direct Loss 1 0.162731667583226 1 0.029603898525238 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874104 chr8:48874104 synonymous SNV . 0 21 hm5C_associated_SNPs_1391 0 0 1 0 1 MCM4 chr8:48874076 3'AG 48874076 Downstream 29bp
chr4 146576316 146576316 1 + C T SKCM 146576316 + 146576296 146576336 41 TAGGTAATTCGTATTTCTGCCCGAAGTGGAGAGGGGATCTC TAGGTAATTCGTATTTCTGCTCGAAGTGGAGAGGGGATCTC Direct Loss 1 0.56547227077251 1 0.104354381561279 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MMAA ENSG00000151611 CDS Human protein_coding chr4:146576316 chr4:146576316 synonymous SNV . 0 21 hm5C_associated_SNPs_1392 0 0 1 0 1 MMAA chr4:146576299 3'AG 146576299 Downstream 18bp
chr11 764334 764334 1 + C T SKCM 764334 + 764314 764354 41 CACCTGGATGAGAAGTCTTTCCGTTGGTTGCACAACGAGGA CACCTGGATGAGAAGTCTTTTCGTTGGTTGCACAACGAGGA Direct Loss 1 0.232495510834596 1 0.355035543441772 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control TALDO1 ENSG00000177156 CDS Human protein_coding chr11:764334 chr11:764334 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_1393 0 0 1 0 2 TALDO1 chr11:764288 3'AG 764288 Downstream 47bp
chr11 764334 764334 1 + C T SKCM 764334 + 764314 764354 41 CACCTGGATGAGAAGTCTTTCCGTTGGTTGCACAACGAGGA CACCTGGATGAGAAGTCTTTTCGTTGGTTGCACAACGAGGA Direct Loss 1 0.232495510834596 1 0.355035543441772 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control TALDO1 ENSG00000177156 CDS Human protein_coding chr11:764334 chr11:764334 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_1393 0 0 1 0 2 TALDO1 chr11:764433 5'GT 764433 Upstream 100bp
chr1 228403514 228403514 1 + C T SKCM 228403514 + 228403494 228403534 41 AACGGCATTGAGAGCAGCATCCGGATGGAGGTCCGGGGTAG AACGGCATTGAGAGCAGCATTCGGATGGAGGTCCGGGGTAG Direct Loss 1 0.181927573491066 1 0.502554595470428 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OBSCN ENSG00000154358 CDS Human protein_coding chr1:228403514 chr1:228403514 synonymous SNV . 0 21 hm5C_associated_SNPs_1394 0 0 0 0 1 OBSCN chr1:228403530 5'GT 228403530 Upstream 17bp
chr19 42373208 42373208 1 + C T SKCM 42373208 + 42373188 42373228 41 TCATGCCCAGCCACTTCAGCCGAGGCTCCAAGAGTGTGGCC TCATGCCCAGCCACTTCAGCTGAGGCTCCAAGAGTGTGGCC Direct Loss 1 0.743098823083714 1 0.109712213277817 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373208 chr19:42373208 stopgain 0.999 1 21 hm5C_associated_SNPs_1396 2 0 1 0 1 RPS19 chr19:42373284 5'GT 42373284 Upstream 77bp
chr3 184042684 184042684 1 + C T SKCM 184042684 + 184042664 184042704 41 AGGCAGAGGAACGAGGACGCCTGAAGGAAGAGCTGGAAGAG AGGCAGAGGAACGAGGACGCTTGAAGGAAGAGCTGGAAGAG Direct Loss 1 0.794174330230883 1 0.527478754520416 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042684 chr3:184042684 synonymous SNV . 0 21 hm5C_associated_SNPs_1397 0 0 1 0 1 EIF4G1 chr3:184042666 3'AG 184042666 Downstream 19bp
chr22 31985558 31985558 1 + C T SKCM 31985558 + 31985538 31985578 41 AGTGCAAGAGCAACACGTTTCCACAGGTATGTTGCGCAGCT AGTGCAAGAGCAACACGTTTTCACAGGTATGTTGCGCAGCT Direct Loss 1 0.383697301270741 1 0.492569595575333 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SFI1 ENSG00000198089 CDS Human protein_coding chr22:31985558 chr22:31985558 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_1398 0 0 1 0 1 SFI1 chr22:31985563 5'GT 31985563 Upstream 6bp
chr16 1556245 1556245 1 + C T SKCM 1556245 + 1556225 1556265 41 GTTGTGTCTGGCAGGGTGGCCCGAGGCAGGGCCCGGCAGGC GTTGTGTCTGGCAGGGTGGCTCGAGGCAGGGCCCGGCAGGC Direct Loss 1 0.405928796218357 1 0.895409822463989 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1556245 chr16:1556245 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_1400 0 0 1 0 1 TELO2 chr16:1556330 5'GT 1556330 Upstream 86bp
chr1 55072914 55072914 1 + C T SKCM 55072914 + 55072894 55072934 41 GGACTTCGTGATCCTGGCCTCGAGGCGGAAGCCTTGTGACA GGACTTCGTGATCCTGGCCTTGAGGCGGAAGCCTTGTGACA Direct Loss 1 0.707499659515799 1 0.663519740104675 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55072914 chr1:55072914 nonsynonymous SNV 0.922 4 21 hm5C_associated_SNPs_1401 0 0 0 0 1 ACOT11 chr1:55072938 5'GT 55072938 Upstream 25bp
chr9 37424932 37424932 1 + C T SKCM 37424932 + 37424912 37424952 41 GCCCACGGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAA GCCCACGGCCTGCTCTGCCTTCTCTCCGACCACGTGGACAA Direct Loss 1 0.188666545678627 1 0.0893107056617737 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424932 chr9:37424932 synonymous SNV . 0 21 hm5C_associated_SNPs_1402 0 0 1 0 2 GRHPR chr9:37424842 3'AG 37424842 Downstream 91bp
chr9 37424932 37424932 1 + C T SKCM 37424932 + 37424912 37424952 41 GCCCACGGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAA GCCCACGGCCTGCTCTGCCTTCTCTCCGACCACGTGGACAA Direct Loss 1 0.188666545678627 1 0.0893107056617737 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424932 chr9:37424932 synonymous SNV . 0 21 hm5C_associated_SNPs_1402 0 0 1 0 2 GRHPR chr9:37424972 5'GT 37424972 Upstream 41bp
chr17 27064861 27064861 1 + C T SKCM 27064861 + 27064841 27064881 41 CCCCCGGGGACCTGTGAGGCCAGCCATCCCACCACCACTGT CCCCCGGGGACCTGTGAGGCTAGCCATCCCACCACCACTGT Direct Loss 1 0.393419093912605 1 0.104640811681747 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NEK8 ENSG00000160602 CDS Human protein_coding chr17:27064861 chr17:27064861 nonsynonymous SNV 0.150 0 21 hm5C_associated_SNPs_1403 0 0 1 0 1 NEK8 chr17:27064837 3'AG 27064837 Downstream 25bp
chr1 180153184 180153184 1 + C T SKCM 180153184 + 180153164 180153204 41 CTGTTTGGAAATTGGCAGATCGGTAAGGCTACGCCTGGTTC CTGTTTGGAAATTGGCAGATTGGTAAGGCTACGCCTGGTTC Direct Loss 1 0.52363623694807 1 0.211071580648422 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control QSOX1 ENSG00000116260 CDS Human protein_coding chr1:180153184 chr1:180153184 nonsynonymous SNV 0.152 3 21 hm5C_associated_SNPs_1404 0 0 0 0 1 QSOX1 chr1:180153185 5'GT 180153185 Upstream 2bp
chr7 142458518 142458518 1 + C T SKCM 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGGTGGCTCTCTCATCAACGAACAGTGGGT Direct Loss 1 0.150967476279732 1 0.0673869848251343 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458518 synonymous SNV . 0 21 hm5C_associated_SNPs_1405 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 39bp
chr7 142458518 142458518 1 + C T SKCM 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGGTGGCTCTCTCATCAACGAACAGTGGGT Direct Loss 1 0.150967476279732 1 0.0673869848251343 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458518 synonymous SNV . 0 21 hm5C_associated_SNPs_1405 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 48bp
chr16 67671679 67671679 1 + C T SKCM 67671679 + 67671659 67671699 41 AAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGGA AAAGAGCCAGATGCTGAGCCTGCAGAGGGAGAGGAAGAGGA Direct Loss 1 0.477418363601504 1 0.599139392375946 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671679 chr16:67671679 synonymous SNV . 0 21 hm5C_associated_SNPs_1406 0 0 1 0 2 CTCF chr16:67671591 3'AG 67671591 Downstream 89bp
chr16 67671679 67671679 1 + C T SKCM 67671679 + 67671659 67671699 41 AAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGGA AAAGAGCCAGATGCTGAGCCTGCAGAGGGAGAGGAAGAGGA Direct Loss 1 0.477418363601504 1 0.599139392375946 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671679 chr16:67671679 synonymous SNV . 0 21 hm5C_associated_SNPs_1406 0 0 1 0 2 CTCF chr16:67671597 3'AG 67671597 Downstream 83bp
chr1 206653240 206653240 1 + C T SKCM 206653240 + 206653220 206653260 41 GGACGTCCCCAAGTTCGTCCCCAAAGTGGACCTGCAGGCGG GGACGTCCCCAAGTTCGTCCTCAAAGTGGACCTGCAGGCGG Direct Loss 1 0.434613826388433 1 0.414059937000275 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IKBKE ENSG00000143466 CDS Human other chr1:206653240 chr1:206653240 nonsynonymous SNV 0.981 2 21 hm5C_associated_SNPs_1407 0 0 1 0 2 IKBKE chr1:206653213 3'AG 206653213 Downstream 28bp
chr1 206653240 206653240 1 + C T SKCM 206653240 + 206653220 206653260 41 GGACGTCCCCAAGTTCGTCCCCAAAGTGGACCTGCAGGCGG GGACGTCCCCAAGTTCGTCCTCAAAGTGGACCTGCAGGCGG Direct Loss 1 0.434613826388433 1 0.414059937000275 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IKBKE ENSG00000143466 CDS Human other chr1:206653240 chr1:206653240 nonsynonymous SNV 0.981 2 21 hm5C_associated_SNPs_1407 0 0 1 0 2 IKBKE chr1:206653277 5'GT 206653277 Upstream 38bp
chr2 128867287 128867287 1 + C T SKCM 128867287 + 128867267 128867307 41 GAAGACTTGTGAATCTGATACCCTTGAGGCTCTTCTACTGA GAAGACTTGTGAATCTGATATCCTTGAGGCTCTTCTACTGA Direct Loss 1 0.0424499182168173 1 0.088289350271225 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128867287 chr2:128867287 nonsynonymous SNV 0.188 1 21 hm5C_associated_SNPs_1409 0 0 1 0 2 UGGT1 chr2:128867208 3'AG 128867208 Downstream 80bp
chr2 128867287 128867287 1 + C T SKCM 128867287 + 128867267 128867307 41 GAAGACTTGTGAATCTGATACCCTTGAGGCTCTTCTACTGA GAAGACTTGTGAATCTGATATCCTTGAGGCTCTTCTACTGA Direct Loss 1 0.0424499182168173 1 0.088289350271225 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128867287 chr2:128867287 nonsynonymous SNV 0.188 1 21 hm5C_associated_SNPs_1409 0 0 1 0 2 UGGT1 chr2:128867320 5'GT 128867320 Upstream 34bp
chr1 164789352 164789352 1 + C T SKCM 164789352 + 164789332 164789372 41 TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA TCAAACTCTGGAGATTTGTTTATGAGCGTGCAGTCACTCAA Direct Loss 1 0.593254346135033 1 0.195088088512421 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789352 chr1:164789352 synonymous SNV . 0 21 hm5C_associated_SNPs_1412 0 0 0 0 2 PBX1 chr1:164789309 3'AG 164789309 Downstream 44bp
chr1 164789352 164789352 1 + C T SKCM 164789352 + 164789332 164789372 41 TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA TCAAACTCTGGAGATTTGTTTATGAGCGTGCAGTCACTCAA Direct Loss 1 0.593254346135033 1 0.195088088512421 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789352 chr1:164789352 synonymous SNV . 0 21 hm5C_associated_SNPs_1412 0 0 0 0 2 PBX1 chr1:164789421 5'GT 164789421 Upstream 70bp
chr3 157841665 157841665 1 + C T SKCM 157841665 + 157841645 157841685 41 TTTATTTCAGACGCAGGCATCGATCAAGCAGTAGCTCTTCT TTTATTTCAGACGCAGGCATTGATCAAGCAGTAGCTCTTCT Direct Loss 1 0.108926824358992 1 0.0641433894634247 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157841665 chr3:157841665 stopgain 0.997 1 21 hm5C_associated_SNPs_1414 0 0 1 0 1 RSRC1 chr3:157841655 3'AG 157841655 Downstream 11bp
chr7 50607616 50607616 1 - G A SKCM 50607616 - 50607596 50607636 41 ATTGGCTGCATCGGCTTCTCCTGGGTGAGGGTCCGGATGCA ATTGGCTGCATCGGCTTCTCTTGGGTGAGGGTCCGGATGCA Direct Loss 1 0.918328045293153 1 0.525632917881012 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DDC ENSG00000132437 CDS Human protein_coding chr7:50607616 chr7:50607616 synonymous SNV . 0 21 hm5C_associated_SNPs_1415 0 0 0 0 1 DDC chr7:50607613 5'GT 50607613 Upstream 4bp
chr7 44801091 44801091 1 + C A SKCM 44801091 + 44801071 44801111 41 CGGCTGACCTTCCCTGTGCGCGATGGGGTGGTCCTGGAGCC CGGCTGACCTTCCCTGTGCGAGATGGGGTGGTCCTGGAGCC Direct Loss 1 0.368231105261006 1 0.48869663476944 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44801091 chr7:44801091 synonymous SNV . 0 21 hm5C_associated_SNPs_1416 0 0 1 0 1 ZMIZ2 chr7:44801048 3'AG 44801048 Downstream 44bp
chr21 45483598 45483598 1 + C T SKCM 45483598 + 45483578 45483618 41 TGCTGCTCTTCCTGCAGAGGCCGTGGGAGGTGGCCCAGCGC TGCTGCTCTTCCTGCAGAGGTCGTGGGAGGTGGCCCAGCGC Direct Loss 1 0.362772008871115 1 0.4979607462883 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45483598 chr21:45483598 nonsynonymous SNV 0.985 4 21 hm5C_associated_SNPs_1417 0 0 1 0 1 TRAPPC10 chr21:45483666 5'GT 45483666 Upstream 69bp
chr7 142459847 142459847 1 + C T SKCM 142459847 + 142459827 142459867 41 ACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACACTGC ACTGGCACGAAGTGCCTCATTTCTGGCTGGGGCAACACTGC Direct Loss 1 0.753597349034025 1 0.0708813369274139 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459847 chr7:142459847 synonymous SNV . 0 21 hm5C_associated_SNPs_1420 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 32bp
chr7 142458544 142458544 1 + C T SKCM 142458544 + 142458524 142458564 41 CAACGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGT CAACGAACAGTGGGTGGTATTAGCAGGCCACTGCTACAAGT Direct Loss 1 0.940593442956925 1 0.753219187259674 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458544 chr7:142458544 nonsynonymous SNV 0.751 3 21 hm5C_associated_SNPs_1422 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 65bp
chr7 142458544 142458544 1 + C T SKCM 142458544 + 142458524 142458564 41 CAACGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGT CAACGAACAGTGGGTGGTATTAGCAGGCCACTGCTACAAGT Direct Loss 1 0.940593442956925 1 0.753219187259674 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458544 chr7:142458544 nonsynonymous SNV 0.751 3 21 hm5C_associated_SNPs_1422 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 22bp
chr4 79173606 79173606 1 + C T SKCM 79173606 + 79173586 79173626 41 CTTGCAATCATGGGGAAGTCCGATGTACCCCCCAACCATGC CTTGCAATCATGGGGAAGTCTGATGTACCCCCCAACCATGC Direct Loss 1 0.201196947407031 1 0.410121470689774 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79173606 chr4:79173606 stopgain 0.134 0 21 hm5C_associated_SNPs_1424 1 0 1 0 2 FRAS1 chr4:79173546 3'AG 79173546 Downstream 61bp
chr4 79173606 79173606 1 + C T SKCM 79173606 + 79173586 79173626 41 CTTGCAATCATGGGGAAGTCCGATGTACCCCCCAACCATGC CTTGCAATCATGGGGAAGTCTGATGTACCCCCCAACCATGC Direct Loss 1 0.201196947407031 1 0.410121470689774 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79173606 chr4:79173606 stopgain 0.134 0 21 hm5C_associated_SNPs_1424 1 0 1 0 2 FRAS1 chr4:79173705 5'GT 79173705 Upstream 100bp
chr7 100205614 100205614 1 + C T SKCM 100205614 + 100205594 100205634 41 GAACAGAGGCCCCGTCCTTCCTCCAGAGAGCTTTGTGGTTC GAACAGAGGCCCCGTCCTTCTTCCAGAGAGCTTTGTGGTTC Direct Loss 1 0.888042216761723 1 0.946294724941254 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100205614 chr7:100205614 nonsynonymous SNV 0.999 0 21 hm5C_associated_SNPs_1425 0 0 1 1 1 PCOLCE chr7:100205560 3'AG 100205560 Downstream 55bp
chrX 153678616 153678616 1 + C T SKCM 153678616 + 153678596 153678636 41 AAGAACAAGCACATCTTTCCCGCCAGCCGCTGGGAACCCTA AAGAACAAGCACATCTTTCCTGCCAGCCGCTGGGAACCCTA Direct Loss 1 0.870445672861953 1 0.512786865234375 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM50A ENSG00000071859 CDS Human protein_coding chrX:153678616 chrX:153678616 synonymous SNV . 0 21 hm5C_associated_SNPs_1426 0 0 1 0 2 FAM50A chrX:153678557 3'AG 153678557 Downstream 60bp
chrX 153678616 153678616 1 + C T SKCM 153678616 + 153678596 153678636 41 AAGAACAAGCACATCTTTCCCGCCAGCCGCTGGGAACCCTA AAGAACAAGCACATCTTTCCTGCCAGCCGCTGGGAACCCTA Direct Loss 1 0.870445672861953 1 0.512786865234375 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM50A ENSG00000071859 CDS Human protein_coding chrX:153678616 chrX:153678616 synonymous SNV . 0 21 hm5C_associated_SNPs_1426 0 0 1 0 2 FAM50A chrX:153678667 5'GT 153678667 Upstream 52bp
chr7 142458415 142458415 1 + C T SKCM 142458415 + 142458395 142458435 41 CTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGA CTCCACTCCAGTTGCTGCCCTCTTTGATGATGATGACAAGA Direct Loss 1 0.00328969809562191 1 0.0727342367172241 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458415 chr7:142458415 nonsynonymous SNV 0.006 3 21 hm5C_associated_SNPs_1428 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 10bp
chr7 56130745 56130745 1 + C T SKCM 56130745 + 56130725 56130765 41 ATTCTCTTGGTTGATGAGATCATGCGAGCTGGAATGTCTTC ATTCTCTTGGTTGATGAGATTATGCGAGCTGGAATGTCTTC Direct Loss 1 0.409007802807691 1 0.0844256281852722 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCT6A ENSG00000146731 CDS Human protein_coding chr7:56130745 chr7:56130745 synonymous SNV . 0 21 hm5C_associated_SNPs_1429 0 0 0 0 1 CCT6A chr7:56130706 3'AG 56130706 Downstream 40bp
chr2 204082013 204082013 1 + C T SKCM 204082013 + 204081993 204082033 41 TTCTCGAAAATTTTGGGGATCGAGCAAGCGGCTCAGCCAGA TTCTCGAAAATTTTGGGGATTGAGCAAGCGGCTCAGCCAGA Direct Loss 1 0.228238185106592 1 0.263271123170853 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204082013 chr2:204082013 nonsynonymous SNV 0.994 4 21 hm5C_associated_SNPs_1430 0 0 1 0 1 NBEAL1 chr2:204081976 3'AG 204081976 Downstream 38bp
chr19 10893721 10893721 1 + C T SKCM 10893721 + 10893701 10893741 41 CTGGCAGCTGAGAGGAAGTTCTTCCTCTCCCACCCGGCCTA CTGGCAGCTGAGAGGAAGTTTTTCCTCTCCCACCCGGCCTA Direct Loss 1 0.193515247325159 1 0.101382315158844 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10893721 chr19:10893721 synonymous SNV . 0 21 hm5C_associated_SNPs_1431 0 0 1 0 1 DNM2 chr19:10893796 5'GT 10893796 Upstream 76bp
chr17 7479910 7479910 1 + C T SKCM 7479910 + 7479890 7479930 41 CACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGCA CACGCCTGTATCGGGGGCACTAACGTGCGTGCTGAGGTGCA Direct Loss 1 0.440893743040897 1 0.153333365917206 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479910 chr17:7479910 stopgain . 0 21 hm5C_associated_SNPs_1433 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 69bp
chr17 7479909 7479909 1 + C T SKCM 7479909 + 7479889 7479929 41 TCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGC TCACGCCTGTATCGGGGGCATCAACGTGCGTGCTGAGGTGC Direct Loss 1 0.126576888372063 1 0.192176729440689 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479909 chr17:7479909 nonsynonymous SNV 0.988 2 21 hm5C_associated_SNPs_1434 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 68bp
chr22 45822019 45822019 1 + C T SKCM 45822019 + 45821999 45822039 41 CAGGAGCAGCTGGAGCAGATCCGCCTAGTCCAGAAGCAGCA CAGGAGCAGCTGGAGCAGATTCGCCTAGTCCAGAAGCAGCA Direct Loss 1 0.351049401927362 1 0.344770580530167 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIBC2 ENSG00000128408 CDS Human protein_coding chr22:45822019 chr22:45822019 synonymous SNV . 0 21 hm5C_associated_SNPs_1435 0 0 0 0 1 RIBC2 chr22:45822055 5'GT 45822055 Upstream 37bp
chr14 61201633 61201633 1 + C T SKCM 61201633 + 61201613 61201653 41 CACCAAATATCGGAACCCCTCCTTGAAGCTGATGGTGAATG CACCAAATATCGGAACCCCTTCTTGAAGCTGATGGTGAATG Direct Loss 1 0.128981955164248 1 0.231731861829758 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61201633 chr14:61201633 nonsynonymous SNV 0.800 3 21 hm5C_associated_SNPs_1437 0 0 1 0 1 MNAT1 chr14:61201669 5'GT 61201669 Upstream 37bp
chr12 121660807 121660807 1 + C G SKCM 121660807 + 121660787 121660827 41 TGTCAAGACGTGTGAGGTGGCGGCCTGGTGCCCGGTGGAGG TGTCAAGACGTGTGAGGTGGGGGCCTGGTGCCCGGTGGAGG Direct Loss 1 0.584052614658802 1 0.574423313140869 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660807 chr12:121660807 nonsynonymous SNV 0.934 0 21 hm5C_associated_SNPs_1439 0 0 1 0 2 P2RX4 chr12:121660750 3'AG 121660750 Downstream 58bp
chr12 121660807 121660807 1 + C G SKCM 121660807 + 121660787 121660827 41 TGTCAAGACGTGTGAGGTGGCGGCCTGGTGCCCGGTGGAGG TGTCAAGACGTGTGAGGTGGGGGCCTGGTGCCCGGTGGAGG Direct Loss 1 0.584052614658802 1 0.574423313140869 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660807 chr12:121660807 nonsynonymous SNV 0.934 0 21 hm5C_associated_SNPs_1439 0 0 1 0 2 P2RX4 chr12:121660846 5'GT 121660846 Upstream 40bp
chr15 25223433 25223433 1 + C T SKCM 25223433 + 25223413 25223453 41 GCCAATAGGCATGCCGCCTCCGGGAATGAGACCCCCTCCAC GCCAATAGGCATGCCGCCTCTGGGAATGAGACCCCCTCCAC Direct Loss 1 0.966020224444401 1 0.969648122787476 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25223433 chr15:25223433 nonsynonymous SNV 0.926 3 21 hm5C_associated_SNPs_1440 0 0 1 0 2 SNRPN chr15:25223340 3'AG 25223340 Downstream 94bp
chr15 25223433 25223433 1 + C T SKCM 25223433 + 25223413 25223453 41 GCCAATAGGCATGCCGCCTCCGGGAATGAGACCCCCTCCAC GCCAATAGGCATGCCGCCTCTGGGAATGAGACCCCCTCCAC Direct Loss 1 0.966020224444401 1 0.969648122787476 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25223433 chr15:25223433 nonsynonymous SNV 0.926 3 21 hm5C_associated_SNPs_1440 0 0 1 0 2 SNRPN chr15:25223465 5'GT 25223465 Upstream 33bp
chr7 142458477 142458477 1 + C T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTACTAGGTGTCCCTGAATTCTGGC Direct Loss 1 0.624055996929593 1 0.808113694190979 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458477 stopgain 0.997 1 21 hm5C_associated_SNPs_1441 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 72bp
chr7 142458477 142458477 1 + C T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTACTAGGTGTCCCTGAATTCTGGC Direct Loss 1 0.624055996929593 1 0.808113694190979 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458477 stopgain 0.997 1 21 hm5C_associated_SNPs_1441 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 89bp
chr2 27455031 27455031 1 + C T SKCM 27455031 + 27455011 27455051 41 GACAGCCTTTGCCGCCAGACCTGCTGCAACAGGCCAAGTGT GACAGCCTTTGCCGCCAGACTTGCTGCAACAGGCCAAGTGT Direct Loss 1 0.301806718090815 1 0.419334918260574 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27455031 chr2:27455031 synonymous SNV . 0 21 hm5C_associated_SNPs_1442 0 0 1 0 1 CAD chr2:27455092 5'GT 27455092 Upstream 62bp
chr1 44446804 44446804 1 + C T SKCM 44446804 + 44446784 44446824 41 AGCAGCCGGATGCCCGGGCCCACTGGGCGGGCCAGTGGCCG AGCAGCCGGATGCCCGGGCCTACTGGGCGGGCCAGTGGCCG Direct Loss 1 0.620006740375997 1 0.0896318256855011 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control B4GALT2 ENSG00000117411 CDS Human protein_coding chr1:44446804 chr1:44446804 nonsynonymous SNV 0.986 1 21 hm5C_associated_SNPs_1443 0 0 1 0 1 B4GALT2 chr1:44446781 3'AG 44446781 Downstream 24bp
chr17 30692381 30692381 1 + C T SKCM 30692381 + 30692361 30692401 41 CTGTTCCACGTCCTGGAATTCCTCCAATGACTCAAGCACAG CTGTTCCACGTCCTGGAATTTCTCCAATGACTCAAGCACAG Direct Loss 1 0.131149868318566 1 0.480494856834412 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30692381 chr17:30692381 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1444 0 0 1 0 1 ZNF207 chr17:30692349 3'AG 30692349 Downstream 33bp
chr10 129141980 129141980 1 + C T SKCM 129141980 + 129141960 129142000 41 CCTGCAACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAA CCTGCAACTGGAGAATTTTTTAAGTGCCAAGAGAGCCAAAA Direct Loss 1 0.362748357207718 1 0.931800663471222 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141980 chr10:129141980 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1445 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 71bp
chr10 129141980 129141980 1 + C T SKCM 129141980 + 129141960 129142000 41 CCTGCAACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAA CCTGCAACTGGAGAATTTTTTAAGTGCCAAGAGAGCCAAAA Direct Loss 1 0.362748357207718 1 0.931800663471222 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141980 chr10:129141980 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1445 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 31bp
chrX 152958983 152958983 1 + C T SKCM 152958983 + 152958963 152959003 41 GCTGGCTTCGTGGTCTTCTCCATCCTGGGCTTCATGGCTGC GCTGGCTTCGTGGTCTTCTCTATCCTGGGCTTCATGGCTGC Direct Loss 1 0.249367225058201 1 0.756363987922668 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958983 chrX:152958983 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_1447 0 0 1 0 3 SLC6A8 chrX:152958917 3'AG 152958917 Downstream 67bp
chrX 152958983 152958983 1 + C T SKCM 152958983 + 152958963 152959003 41 GCTGGCTTCGTGGTCTTCTCCATCCTGGGCTTCATGGCTGC GCTGGCTTCGTGGTCTTCTCTATCCTGGGCTTCATGGCTGC Direct Loss 1 0.249367225058201 1 0.756363987922668 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958983 chrX:152958983 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_1447 0 0 1 0 3 SLC6A8 chrX:152958947 3'AG 152958947 Downstream 37bp
chrX 152958983 152958983 1 + C T SKCM 152958983 + 152958963 152959003 41 GCTGGCTTCGTGGTCTTCTCCATCCTGGGCTTCATGGCTGC GCTGGCTTCGTGGTCTTCTCTATCCTGGGCTTCATGGCTGC Direct Loss 1 0.249367225058201 1 0.756363987922668 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958983 chrX:152958983 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_1447 0 0 1 0 3 SLC6A8 chrX:152959041 5'GT 152959041 Upstream 59bp
chr17 65735123 65735123 1 + C T SKCM 65735123 + 65735103 65735143 41 GACATCCCAGCACAGCATATCACGGTAAGTGTTCATACAAG GACATCCCAGCACAGCATATTACGGTAAGTGTTCATACAAG Direct Loss 1 0.71198300067923 1 0.327683508396149 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65735123 chr17:65735123 synonymous SNV . 0 21 hm5C_associated_SNPs_1448 0 0 1 0 2 NOL11 chr17:65735048 3'AG 65735048 Downstream 76bp
chr17 65735123 65735123 1 + C T SKCM 65735123 + 65735103 65735143 41 GACATCCCAGCACAGCATATCACGGTAAGTGTTCATACAAG GACATCCCAGCACAGCATATTACGGTAAGTGTTCATACAAG Direct Loss 1 0.71198300067923 1 0.327683508396149 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65735123 chr17:65735123 synonymous SNV . 0 21 hm5C_associated_SNPs_1448 0 0 1 0 2 NOL11 chr17:65735126 5'GT 65735126 Upstream 4bp
chr16 88926153 88926153 1 + C T SKCM 88926153 + 88926133 88926173 41 CCCTTCGAGACAACGAAATTCGCAGCGTAAGTCAGGGAGTT CCCTTCGAGACAACGAAATTTGCAGCGTAAGTCAGGGAGTT Direct Loss 1 0.541487355108805 1 0.560839474201202 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRAPPC2L ENSG00000167515 CDS Human protein_coding chr16:88926153 chr16:88926153 nonsynonymous SNV 0.954 5 21 hm5C_associated_SNPs_1449 0 0 0 0 1 TRAPPC2L chr16:88926071 3'AG 88926071 Downstream 83bp
chr3 148714596 148714596 1 + C T SKCM 148714596 + 148714576 148714616 41 AGCACCAGACCCAGGGTGGCCTGACTGCTTCAATTCCGGAG AGCACCAGACCCAGGGTGGCTTGACTGCTTCAATTCCGGAG Direct Loss 1 0.446234167666719 1 0.447910755872726 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GYG1 ENSG00000163754 CDS Human protein_coding chr3:148714596 chr3:148714596 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1450 0 0 1 0 3 GYG1 chr3:148714529 3'AG 148714529 Downstream 68bp
chr3 148714596 148714596 1 + C T SKCM 148714596 + 148714576 148714616 41 AGCACCAGACCCAGGGTGGCCTGACTGCTTCAATTCCGGAG AGCACCAGACCCAGGGTGGCTTGACTGCTTCAATTCCGGAG Direct Loss 1 0.446234167666719 1 0.447910755872726 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GYG1 ENSG00000163754 CDS Human protein_coding chr3:148714596 chr3:148714596 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1450 0 0 1 0 3 GYG1 chr3:148714679 5'GT 148714679 Upstream 84bp
chr3 148714596 148714596 1 + C T SKCM 148714596 + 148714576 148714616 41 AGCACCAGACCCAGGGTGGCCTGACTGCTTCAATTCCGGAG AGCACCAGACCCAGGGTGGCTTGACTGCTTCAATTCCGGAG Direct Loss 1 0.446234167666719 1 0.447910755872726 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GYG1 ENSG00000163754 CDS Human protein_coding chr3:148714596 chr3:148714596 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1450 0 0 1 0 3 GYG1 chr3:148714691 5'GT 148714691 Upstream 96bp
chr1 116929972 116929972 1 + C T SKCM 116929972 + 116929952 116929992 41 GGTCCCAACGCCCTCACTCCCCCTCCCACTACTCCTGAATG GGTCCCAACGCCCTCACTCCTCCTCCCACTACTCCTGAATG Direct Loss 1 0.0826100403651766 1 0.128065466880798 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116929972 chr1:116929972 synonymous SNV . 0 21 hm5C_associated_SNPs_1451 0 0 1 0 1 ATP1A1 chr1:116929910 3'AG 116929910 Downstream 63bp
chr7 142459658 142459658 1 + C T SKCM 142459658 + 142459638 142459678 41 AGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAATGA AGACTGGGAGAGCACAACATTGAAGTCCTGGAGGGGAATGA Direct Loss 1 0.745642464903961 1 0.412508249282837 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459658 chr7:142459658 synonymous SNV 0.234 0 21 hm5C_associated_SNPs_1453 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 34bp
chr7 73731904 73731904 1 + C T SKCM 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC AGCCCAGCGGCCTGAAGCCCTCCGGCCGTGGGGGGAAGCAC Direct Loss 1 0.418336288833292 1 0.357889294624329 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731904 nonsynonymous SNV 0.996 3 21 hm5C_associated_SNPs_1454 0 0 0 0 2 CLIP2 chr7:73731810 3'AG 73731810 Downstream 95bp
chr7 73731904 73731904 1 + C T SKCM 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC AGCCCAGCGGCCTGAAGCCCTCCGGCCGTGGGGGGAAGCAC Direct Loss 1 0.418336288833292 1 0.357889294624329 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731904 nonsynonymous SNV 0.996 3 21 hm5C_associated_SNPs_1454 0 0 0 0 2 CLIP2 chr7:73731997 5'GT 73731997 Upstream 94bp
chr20 37154672 37154672 1 + C T SKCM 37154672 + 37154652 37154692 41 GAAACGGACCCCAACAACACCCAAATGATATTAGGTTTGTA GAAACGGACCCCAACAACACTCAAATGATATTAGGTTTGTA Direct Loss 1 0.0885666212606752 1 0.63178688287735 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37154672 chr20:37154672 synonymous SNV . 0 21 hm5C_associated_SNPs_1457 0 0 1 0 1 RALGAPB chr20:37154685 5'GT 37154685 Upstream 14bp
chr22 31658771 31658771 1 + C T SKCM 31658771 + 31658751 31658791 41 GGGGACACTGAGGAGACGTTCCCTAAGGTGCCACCTCCCAC GGGGACACTGAGGAGACGTTTCCTAAGGTGCCACCTCCCAC Direct Loss 1 0.392266309259072 1 0.0602766573429108 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31658771 chr22:31658771 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1459 0 0 1 0 1 LIMK2 chr22:31658777 5'GT 31658777 Upstream 7bp
chr22 24573545 24573545 1 + C T SKCM 24573545 + 24573525 24573565 41 AGTGAGACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAG AGTGAGACTCAGCCCCTGAGTTCTCCCCCAACAGCTGCCAG Direct Loss 1 0.0936166892150745 1 0.269952356815338 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573545 chr22:24573545 synonymous SNV . 0 21 hm5C_associated_SNPs_1461 0 0 1 0 1 CABIN1 chr22:24573472 3'AG 24573472 Downstream 74bp
chr7 129064943 129064943 1 + C T SKCM 129064943 + 129064923 129064963 41 TTTACAATGCTCCTGAGGGTCGCTATAAGCAGGATGTCTAC TTTACAATGCTCCTGAGGGTTGCTATAAGCAGGATGTCTAC Direct Loss 1 0.604370468265283 1 0.325188875198364 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064943 chr7:129064943 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_1463 0 0 0 0 2 AHCYL2 chr7:129064904 3'AG 129064904 Downstream 40bp
chr7 129064943 129064943 1 + C T SKCM 129064943 + 129064923 129064963 41 TTTACAATGCTCCTGAGGGTCGCTATAAGCAGGATGTCTAC TTTACAATGCTCCTGAGGGTTGCTATAAGCAGGATGTCTAC Direct Loss 1 0.604370468265283 1 0.325188875198364 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064943 chr7:129064943 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_1463 0 0 0 0 2 AHCYL2 chr7:129064982 5'GT 129064982 Upstream 40bp
chr1 874684 874684 1 + C T SKCM 874684 + 874664 874704 41 TGCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGAC TGCTGCCGCGGGAGCTGGGGTCCAGCATGGCCCCGGAGGAC Direct Loss 1 0.537046198905006 1 0.583532750606537 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874684 chr1:874684 nonsynonymous SNV 0.013 0 21 hm5C_associated_SNPs_1464 0 0 0 0 1 SAMD11 chr1:874652 3'AG 874652 Downstream 33bp
chr19 42839497 42839497 1 + C T SKCM 42839497 + 42839477 42839517 41 CCTCGTCCTATACAACTTCTCCGCCAACACCTGGGAGTCTT CCTCGTCCTATACAACTTCTTCGCCAACACCTGGGAGTCTT Direct Loss 1 0.111563161899731 1 0.293267488479614 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42839497 chr19:42839497 nonsynonymous SNV 0.749 2 21 hm5C_associated_SNPs_1465 0 0 1 0 2 MEGF8 chr19:42839449 3'AG 42839449 Downstream 49bp
chr19 42839497 42839497 1 + C T SKCM 42839497 + 42839477 42839517 41 CCTCGTCCTATACAACTTCTCCGCCAACACCTGGGAGTCTT CCTCGTCCTATACAACTTCTTCGCCAACACCTGGGAGTCTT Direct Loss 1 0.111563161899731 1 0.293267488479614 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42839497 chr19:42839497 nonsynonymous SNV 0.749 2 21 hm5C_associated_SNPs_1465 0 0 1 0 2 MEGF8 chr19:42839537 5'GT 42839537 Upstream 41bp
chr2 170462562 170462562 1 + C T SKCM 170462562 + 170462542 170462582 41 TCTATAGGTGAAAAGGGGACCGGGAAATCAACTCAGAAACC TCTATAGGTGAAAAGGGGACTGGGAAATCAACTCAGAAACC Direct Loss 1 0.835214828638266 1 0.761705636978149 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPIG ENSG00000138398 CDS Human protein_coding chr2:170462562 chr2:170462562 synonymous SNV . 0 21 hm5C_associated_SNPs_1466 0 0 1 0 2 PPIG chr2:170462549 3'AG 170462549 Downstream 14bp
chr2 170462562 170462562 1 + C T SKCM 170462562 + 170462542 170462582 41 TCTATAGGTGAAAAGGGGACCGGGAAATCAACTCAGAAACC TCTATAGGTGAAAAGGGGACTGGGAAATCAACTCAGAAACC Direct Loss 1 0.835214828638266 1 0.761705636978149 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPIG ENSG00000138398 CDS Human protein_coding chr2:170462562 chr2:170462562 synonymous SNV . 0 21 hm5C_associated_SNPs_1466 0 0 1 0 2 PPIG chr2:170462656 5'GT 170462656 Upstream 95bp
chr3 49060174 49060174 1 + C T SKCM 49060174 + 49060154 49060194 41 TCACCGAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC TCACCGAAGACAGCTTTTCCTTCTTCTGGTTGCTGGAGCCC Direct Loss 1 0.379565764527607 1 0.055632472038269 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060174 chr3:49060174 nonsynonymous SNV 0.991 3 21 hm5C_associated_SNPs_1467 0 0 1 0 2 NDUFAF3 chr3:49060135 3'AG 49060135 Downstream 40bp
chr3 49060174 49060174 1 + C T SKCM 49060174 + 49060154 49060194 41 TCACCGAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC TCACCGAAGACAGCTTTTCCTTCTTCTGGTTGCTGGAGCCC Direct Loss 1 0.379565764527607 1 0.055632472038269 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060174 chr3:49060174 nonsynonymous SNV 0.991 3 21 hm5C_associated_SNPs_1467 0 0 1 0 2 NDUFAF3 chr3:49060201 5'GT 49060201 Upstream 28bp
chr17 4859344 4859344 1 + C T SKCM 4859344 + 4859324 4859364 41 ATGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCC ATGACTTGACAGTCACCAACTCCAAGAGGATTGCCCAGGCC Direct Loss 1 0.565697161414158 1 0.755208909511566 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859344 chr17:4859344 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_1468 0 0 1 0 1 ENO3 chr17:4859438 5'GT 4859438 Upstream 95bp
chr8 145151587 145151587 1 + C T SKCM 145151587 + 145151567 145151607 41 TCTACTTCAACCCCTACTTTCCTGGCCAGGCCATTGCCATG TCTACTTCAACCCCTACTTTTCTGGCCAGGCCATTGCCATG Direct Loss 1 0.307776448578541 1 0.301938712596893 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151587 chr8:145151587 nonsynonymous SNV 0.971 1 21 hm5C_associated_SNPs_1469 0 0 1 0 1 CYC1 chr8:145151647 5'GT 145151647 Upstream 61bp
chr17 38142926 38142926 1 + C T SKCM 38142926 + 38142906 38142946 41 GAAGCCTATCTCCAACTCCTCGTGGTCATCTTCATGATGAA GAAGCCTATCTCCAACTCCTTGTGGTCATCTTCATGATGAA Direct Loss 1 0.381265611359635 1 0.0694875419139862 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38142926 chr17:38142926 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_1470 0 0 1 0 2 PSMD3 chr17:38142828 3'AG 38142828 Downstream 99bp
chr17 38142926 38142926 1 + C T SKCM 38142926 + 38142906 38142946 41 GAAGCCTATCTCCAACTCCTCGTGGTCATCTTCATGATGAA GAAGCCTATCTCCAACTCCTTGTGGTCATCTTCATGATGAA Direct Loss 1 0.381265611359635 1 0.0694875419139862 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38142926 chr17:38142926 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_1470 0 0 1 0 2 PSMD3 chr17:38142965 5'GT 38142965 Upstream 40bp
chr11 75279855 75279855 1 + C T SKCM 75279855 + 75279835 75279875 41 CGGTCCTATACCGTGGGTGTCATGATGATGCACCGGACAGG CGGTCCTATACCGTGGGTGTTATGATGATGCACCGGACAGG Direct Loss 1 0.579027965621316 1 0.0644873678684235 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279855 chr11:75279855 synonymous SNV . 0 21 hm5C_associated_SNPs_1471 0 0 1 0 2 SERPINH1 chr11:75279776 3'AG 75279776 Downstream 80bp
chr11 75279855 75279855 1 + C T SKCM 75279855 + 75279835 75279875 41 CGGTCCTATACCGTGGGTGTCATGATGATGCACCGGACAGG CGGTCCTATACCGTGGGTGTTATGATGATGCACCGGACAGG Direct Loss 1 0.579027965621316 1 0.0644873678684235 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279855 chr11:75279855 synonymous SNV . 0 21 hm5C_associated_SNPs_1471 0 0 1 0 2 SERPINH1 chr11:75279874 5'GT 75279874 Upstream 20bp
chr12 121660778 121660778 1 + C T SKCM 121660778 + 121660758 121660798 41 ACAGGCAGGTGCGTAGCTTTCAACGGGTCTGTCAAGACGTG ACAGGCAGGTGCGTAGCTTTTAACGGGTCTGTCAAGACGTG Direct Loss 1 0.820931819207083 1 0.402156054973602 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660778 chr12:121660778 synonymous SNV . 0 21 hm5C_associated_SNPs_1472 0 0 0 0 2 P2RX4 chr12:121660750 3'AG 121660750 Downstream 29bp
chr12 121660778 121660778 1 + C T SKCM 121660778 + 121660758 121660798 41 ACAGGCAGGTGCGTAGCTTTCAACGGGTCTGTCAAGACGTG ACAGGCAGGTGCGTAGCTTTTAACGGGTCTGTCAAGACGTG Direct Loss 1 0.820931819207083 1 0.402156054973602 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660778 chr12:121660778 synonymous SNV . 0 21 hm5C_associated_SNPs_1472 0 0 0 0 2 P2RX4 chr12:121660846 5'GT 121660846 Upstream 69bp
chr15 93482839 93482839 1 + C T SKCM 93482839 + 93482819 93482859 41 AACCTCGTGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAG AACCTCGTGTTAAAAAGCAGTCGAAGACTCAGCGTGGAAAG Direct Loss 1 0.214035338973396 1 0.0588084161281586 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482839 chr15:93482839 nonsynonymous SNV 0.986 0 21 hm5C_associated_SNPs_1473 0 0 1 0 1 CHD2 chr15:93482808 3'AG 93482808 Downstream 32bp
chr15 93482840 93482840 1 + C T SKCM 93482840 + 93482820 93482860 41 ACCTCGTGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGA ACCTCGTGTTAAAAAGCAGCTGAAGACTCAGCGTGGAAAGA Direct Loss 1 0.152545831940651 1 0.238453060388565 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482840 chr15:93482840 nonsynonymous SNV 0.987 0 21 hm5C_associated_SNPs_1474 0 0 1 0 1 CHD2 chr15:93482808 3'AG 93482808 Downstream 33bp
chr17 78082400 78082400 1 + C T SKCM 78082400 + 78082380 78082420 41 AACATGACCAGGGCCCACTTCCCCCTGGTGAGTTGGGGTGG AACATGACCAGGGCCCACTTTCCCCTGGTGAGTTGGGGTGG Direct Loss 1 0.281355712398568 1 0.49967959523201 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082400 chr17:78082400 synonymous SNV . 0 21 hm5C_associated_SNPs_1476 0 0 0 0 1 GAA chr17:78082406 5'GT 78082406 Upstream 7bp
chr7 142458485 142458485 1 + C T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACCAGGTGTCTCTGAATTCTGGCTACCACTT Direct Loss 1 0.308674625761687 1 0.193259328603745 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458485 synonymous SNV . 0 21 hm5C_associated_SNPs_1479 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 80bp
chr7 142458485 142458485 1 + C T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACCAGGTGTCTCTGAATTCTGGCTACCACTT Direct Loss 1 0.308674625761687 1 0.193259328603745 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458485 synonymous SNV . 0 21 hm5C_associated_SNPs_1479 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 6bp
chr7 142458485 142458485 1 + C T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACCAGGTGTCTCTGAATTCTGGCTACCACTT Direct Loss 1 0.308674625761687 1 0.193259328603745 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458485 synonymous SNV . 0 21 hm5C_associated_SNPs_1479 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 81bp
chr2 88405935 88405935 1 + C T SKCM 88405935 + 88405915 88405955 41 GCGGATGCTGAGCATTGTTTCGGAGGTCCTTTCCTACCTCC GCGGATGCTGAGCATTGTTTTGGAGGTCCTTTCCTACCTCC Direct Loss 1 0.880537623668794 1 0.923516154289246 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control SMYD1 ENSG00000115593 CDS Human protein_coding chr2:88405935 chr2:88405935 nonsynonymous SNV 0.028 0 21 hm5C_associated_SNPs_1480 0 0 0 0 2 SMYD1 chr2:88405844 3'AG 88405844 Downstream 92bp
chr2 88405935 88405935 1 + C T SKCM 88405935 + 88405915 88405955 41 GCGGATGCTGAGCATTGTTTCGGAGGTCCTTTCCTACCTCC GCGGATGCTGAGCATTGTTTTGGAGGTCCTTTCCTACCTCC Direct Loss 1 0.880537623668794 1 0.923516154289246 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control SMYD1 ENSG00000115593 CDS Human protein_coding chr2:88405935 chr2:88405935 nonsynonymous SNV 0.028 0 21 hm5C_associated_SNPs_1480 0 0 0 0 2 SMYD1 chr2:88406007 5'GT 88406007 Upstream 73bp
chr5 64267545 64267545 1 + C T SKCM 64267545 + 64267525 64267565 41 TTTAGAGGAAGAAGCCCCTCCAGATGGTGCTGTTGCCGAAT TTTAGAGGAAGAAGCCCCTCTAGATGGTGCTGTTGCCGAAT Direct Loss 1 0.246921004161454 1 0.682821869850159 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64267545 chr5:64267545 nonsynonymous SNV 0.908 0 21 hm5C_associated_SNPs_1481 0 0 1 0 2 CWC27 chr5:64267530 3'AG 64267530 Downstream 16bp
chr5 64267545 64267545 1 + C T SKCM 64267545 + 64267525 64267565 41 TTTAGAGGAAGAAGCCCCTCCAGATGGTGCTGTTGCCGAAT TTTAGAGGAAGAAGCCCCTCTAGATGGTGCTGTTGCCGAAT Direct Loss 1 0.246921004161454 1 0.682821869850159 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64267545 chr5:64267545 nonsynonymous SNV 0.908 0 21 hm5C_associated_SNPs_1481 0 0 1 0 2 CWC27 chr5:64267639 5'GT 64267639 Upstream 95bp
chr1 22333383 22333383 1 + C T SKCM 22333383 + 22333363 22333403 41 CTCCCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCAG CTCCCCAGCAATGACATCGCTCTCATCAAGCTCTCACGCAG Direct Loss 1 0.289682888396501 1 0.0227782726287842 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333383 chr1:22333383 synonymous SNV . 0 21 hm5C_associated_SNPs_1482 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 13bp
chr10 118314748 118314748 1 + C T SKCM 118314748 + 118314728 118314768 41 GAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGA GAATTAGTCCGATTGGACCCTAGCGATGCCAAATTTGTGGA Direct Loss 1 0.704087389163642 1 0.307035744190216 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314748 chr10:118314748 synonymous SNV . 0 21 hm5C_associated_SNPs_1483 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 62bp
chr20 62373328 62373328 1 + C T SKCM 62373328 + 62373308 62373348 41 GACCTGGCCAGTGACCAGTCCTCTCCGTCCACCCCGTCACC GACCTGGCCAGTGACCAGTCTTCTCCGTCCACCCCGTCACC Direct Loss 1 0.0855033540997224 1 0.0271331071853638 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62373328 chr20:62373328 synonymous SNV . 0 21 hm5C_associated_SNPs_1484 0 0 1 0 1 SLC2A4RG chr20:62373409 5'GT 62373409 Upstream 82bp
chr7 142459664 142459664 1 + C T SKCM 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCACAACATCGAAGTTCTGGAGGGGAATGAGCAGTT Direct Loss 1 0.534587574962098 1 0.497306019067764 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459664 synonymous SNV . 0 21 hm5C_associated_SNPs_1485 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 40bp
chr8 38899581 38899581 1 + C T SKCM 38899581 + 38899561 38899601 41 TGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTGGTGG TGAAGCCTATAGTGCTCCCTTCTGTGGTAATAAGTTGGTGG Direct Loss 1 0.181472583874778 1 0.44437175989151 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38899581 chr8:38899581 nonsynonymous SNV 0.992 0 21 hm5C_associated_SNPs_1486 0 0 1 0 1 ADAM9 chr8:38899636 5'GT 38899636 Upstream 56bp
chr19 39215191 39215191 1 + C T SKCM 39215191 + 39215171 39215211 41 ATGTTGTGGGGCCCTGGATCCAGACCAAGATGGAGGTGAGG ATGTTGTGGGGCCCTGGATCTAGACCAAGATGGAGGTGAGG Direct Loss 1 0.230705730943744 1 0.47801661491394 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215191 chr19:39215191 stopgain 1.000 1 21 hm5C_associated_SNPs_1488 0 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 15bp
chr1 16778415 16778415 1 + C T SKCM 16778415 + 16778395 16778435 41 GCTGAGCCTGCTTCCCCCTCCCCCAGGGGGGAAAACCTCCA GCTGAGCCTGCTTCCCCCTCTCCCAGGGGGGAAAACCTCCA Direct Loss 1 0.730926590765227 1 0.647616446018219 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778415 chr1:16778415 nonsynonymous SNV 0.894 4 21 hm5C_associated_SNPs_1489 0 0 0 0 2 NECAP2 chr1:16778333 3'AG 16778333 Downstream 83bp
chr1 16778415 16778415 1 + C T SKCM 16778415 + 16778395 16778435 41 GCTGAGCCTGCTTCCCCCTCCCCCAGGGGGGAAAACCTCCA GCTGAGCCTGCTTCCCCCTCTCCCAGGGGGGAAAACCTCCA Direct Loss 1 0.730926590765227 1 0.647616446018219 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778415 chr1:16778415 nonsynonymous SNV 0.894 4 21 hm5C_associated_SNPs_1489 0 0 0 0 2 NECAP2 chr1:16778510 5'GT 16778510 Upstream 96bp
chr21 37785214 37785214 1 + C A SKCM 37785214 + 37785194 37785234 41 TGCCTTCCTGGCCATTTCTTCCACGGACGGTTACTGCTCAT TGCCTTCCTGGCCATTTCTTACACGGACGGTTACTGCTCAT Direct Loss 1 0.355422907160595 1 0.0903894603252411 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37785214 chr21:37785214 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_1490 0 0 1 0 1 CHAF1B chr21:37785182 3'AG 37785182 Downstream 33bp
chr10 93751949 93751949 1 + C T SKCM 93751949 + 93751929 93751969 41 ATAATTACACTCTACAGGCACCAGAAAGCTGCCTTTGCTAT ATAATTACACTCTACAGGCATCAGAAAGCTGCCTTTGCTAT Direct Loss 1 0.381782352510246 1 0.292970269918442 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93751949 chr10:93751949 synonymous SNV . 0 21 hm5C_associated_SNPs_1492 0 0 1 0 1 BTAF1 chr10:93751876 3'AG 93751876 Downstream 74bp
chr14 75746585 75746585 1 + C T SKCM 75746585 + 75746565 75746605 41 TCTGTTTTGTTCTAGGACTTCTGCACGGACCTGGCCGTCTC TCTGTTTTGTTCTAGGACTTTTGCACGGACCTGGCCGTCTC Direct Loss 1 0.868534276765746 1 0.325188487768173 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746585 chr14:75746585 synonymous SNV . 0 21 hm5C_associated_SNPs_1493 0 0 1 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 6bp
chr11 65824782 65824782 1 + C T SKCM 65824782 + 65824762 65824802 41 CCCCACTCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCCC CCCCACTCCTACAGTTTTGCTCATGGGAGCCCCTGTTCCCC Direct Loss 1 0.30212064447141 1 0.0645251274108887 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824782 chr11:65824782 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1495 0 0 1 0 2 SF3B2 chr11:65824737 3'AG 65824737 Downstream 46bp
chr11 65824782 65824782 1 + C T SKCM 65824782 + 65824762 65824802 41 CCCCACTCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCCC CCCCACTCCTACAGTTTTGCTCATGGGAGCCCCTGTTCCCC Direct Loss 1 0.30212064447141 1 0.0645251274108887 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824782 chr11:65824782 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1495 0 0 1 0 2 SF3B2 chr11:65824846 5'GT 65824846 Upstream 65bp
chr2 153482014 153482014 1 + C T SKCM 153482014 + 153481994 153482034 41 CAGTGTTTAACTGGGTTGCTCTGAAGCCCAATCAGATCAAT CAGTGTTTAACTGGGTTGCTTTGAAGCCCAATCAGATCAAT Direct Loss 1 0.609817199347163 1 0.427623510360718 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153482014 chr2:153482014 synonymous SNV . 0 21 hm5C_associated_SNPs_1496 0 0 1 0 2 FMNL2 chr2:153481952 3'AG 153481952 Downstream 63bp
chr2 153482014 153482014 1 + C T SKCM 153482014 + 153481994 153482034 41 CAGTGTTTAACTGGGTTGCTCTGAAGCCCAATCAGATCAAT CAGTGTTTAACTGGGTTGCTTTGAAGCCCAATCAGATCAAT Direct Loss 1 0.609817199347163 1 0.427623510360718 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153482014 chr2:153482014 synonymous SNV . 0 21 hm5C_associated_SNPs_1496 0 0 1 0 2 FMNL2 chr2:153482076 5'GT 153482076 Upstream 63bp
chr3 138119379 138119379 1 + C T SKCM 138119379 + 138119359 138119399 41 TGAGCTTTGCCTTCCAGATTCCGTACATAGAAACCAGTGCC TGAGCTTTGCCTTCCAGATTTCGTACATAGAAACCAGTGCC Direct Loss 1 0.216427685970007 1 0.26507556438446 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRAS ENSG00000158186 CDS Human protein_coding chr3:138119379 chr3:138119379 nonsynonymous SNV 0.992 1 21 hm5C_associated_SNPs_1499 0 0 0 0 2 MRAS chr3:138119376 3'AG 138119376 Downstream 4bp
chr3 138119379 138119379 1 + C T SKCM 138119379 + 138119359 138119399 41 TGAGCTTTGCCTTCCAGATTCCGTACATAGAAACCAGTGCC TGAGCTTTGCCTTCCAGATTTCGTACATAGAAACCAGTGCC Direct Loss 1 0.216427685970007 1 0.26507556438446 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRAS ENSG00000158186 CDS Human protein_coding chr3:138119379 chr3:138119379 nonsynonymous SNV 0.992 1 21 hm5C_associated_SNPs_1499 0 0 0 0 2 MRAS chr3:138119455 5'GT 138119455 Upstream 77bp
chr19 14580207 14580207 1 + C T SKCM 14580207 + 14580187 14580227 41 ACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCGGCTG ACCAGTGCGGGACACCCCTTTCTGGTGAACCTCTTCGGCTG Direct Loss 1 0.450721944834884 1 0.784686923027039 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580207 chr19:14580207 synonymous SNV . 0 21 hm5C_associated_SNPs_1500 0 0 1 0 1 PKN1 chr19:14580153 3'AG 14580153 Downstream 55bp
chr7 142458470 142458470 1 + C T SKCM 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTTCCCTACCAGGTGTCCCTGAA Direct Loss 1 0.139822273588299 1 0.219020485877991 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458470 synonymous SNV . 0 21 hm5C_associated_SNPs_1501 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 65bp
chr7 142458470 142458470 1 + C T SKCM 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTTCCCTACCAGGTGTCCCTGAA Direct Loss 1 0.139822273588299 1 0.219020485877991 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458470 synonymous SNV . 0 21 hm5C_associated_SNPs_1501 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 96bp
chr7 91714867 91714867 1 + C T SKCM 91714867 + 91714847 91714887 41 GCTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGGACC GCTTTCTCTCACTGAGTCTCTCTATAGTGATGGAGAGGACC Direct Loss 1 0.018518825223804 1 0.200067222118378 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714867 chr7:91714867 nonsynonymous SNV 0.393 0 21 hm5C_associated_SNPs_1502 0 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 59bp
chr7 142459713 142459713 1 + C T SKCM 142459713 + 142459693 142459733 41 CAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT CAGCCAAGATCATCCGCCACTCCCAATACGACAGGAAGACT Direct Loss 1 0.486719453873397 1 0.797509908676147 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459713 chr7:142459713 nonsynonymous SNV 0.015 3 21 hm5C_associated_SNPs_1504 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 89bp
chr17 59161840 59161840 1 + C T SKCM 59161840 + 59161820 59161860 41 CATTGCAGGATCCAGCCAGTCCGCTCTGACCCCGTCAGCAT CATTGCAGGATCCAGCCAGTTCGCTCTGACCCCGTCAGCAT Direct Loss 1 0.27258246630212 1 0.0906911790370941 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BCAS3 ENSG00000141376 CDS Human protein_coding chr17:59161840 chr17:59161840 synonymous SNV . 0 21 hm5C_associated_SNPs_1505 0 0 1 0 2 BCAS3 chr17:59161828 3'AG 59161828 Downstream 13bp
chr17 59161840 59161840 1 + C T SKCM 59161840 + 59161820 59161860 41 CATTGCAGGATCCAGCCAGTCCGCTCTGACCCCGTCAGCAT CATTGCAGGATCCAGCCAGTTCGCTCTGACCCCGTCAGCAT Direct Loss 1 0.27258246630212 1 0.0906911790370941 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BCAS3 ENSG00000141376 CDS Human protein_coding chr17:59161840 chr17:59161840 synonymous SNV . 0 21 hm5C_associated_SNPs_1505 0 0 1 0 2 BCAS3 chr17:59161925 5'GT 59161925 Upstream 86bp
chr7 128407644 128407644 1 + C T SKCM 128407644 + 128407624 128407664 41 AGACCAAAGACTGGATCCTTCCCTCAGACTATGATCATGCA AGACCAAAGACTGGATCCTTTCCTCAGACTATGATCATGCA Direct Loss 1 0.126166233538361 1 0.254524320363998 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CALU ENSG00000128595 CDS Human protein_coding chr7:128407644 chr7:128407644 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1506 0 0 1 0 1 CALU chr7:128407709 5'GT 128407709 Upstream 66bp
chr17 48628471 48628471 1 + C T SKCM 48628471 + 48628451 48628491 41 CGTGCGGACCTTGCTCAATTCAGGGCTGGAGAAGCTCTTCC CGTGCGGACCTTGCTCAATTTAGGGCTGGAGAAGCTCTTCC Direct Loss 1 0.888649830323407 1 0.355765402317047 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SPATA20 ENSG00000006282 CDS Human protein_coding chr17:48628471 chr17:48628471 nonsynonymous SNV 0.018 0 21 hm5C_associated_SNPs_1507 0 0 1 0 1 SPATA20 chr17:48628551 5'GT 48628551 Upstream 81bp
chr16 90028230 90028230 1 + C T SKCM 90028230 + 90028210 90028250 41 TGGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAA TGGAACGACCTGGCTGTGATTCCTGCACGCGTTGTACACAA Direct Loss 1 0.433099490173326 1 0.366952568292618 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028230 chr16:90028230 synonymous SNV . 0 21 hm5C_associated_SNPs_1508 0 0 1 0 2 DEF8 chr16:90028145 3'AG 90028145 Downstream 86bp
chr16 90028230 90028230 1 + C T SKCM 90028230 + 90028210 90028250 41 TGGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAA TGGAACGACCTGGCTGTGATTCCTGCACGCGTTGTACACAA Direct Loss 1 0.433099490173326 1 0.366952568292618 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028230 chr16:90028230 synonymous SNV . 0 21 hm5C_associated_SNPs_1508 0 0 1 0 2 DEF8 chr16:90028272 5'GT 90028272 Upstream 43bp
chr20 42169585 42169585 1 + C T SKCM 42169585 + 42169565 42169605 41 CCCCACCAGGCAAGAATAGTCAGAGTGACCCATGTATCTGG CCCCACCAGGCAAGAATAGTTAGAGTGACCCATGTATCTGG Direct Loss 1 0.71831730131791 1 0.866810202598572 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control L3MBTL1 ENSG00000185513 CDS Human protein_coding chr20:42169585 chr20:42169585 synonymous SNV . 0 21 hm5C_associated_SNPs_1509 0 0 1 0 1 L3MBTL1 chr20:42169574 3'AG 42169574 Downstream 12bp
chr7 142458466 142458466 1 + C T SKCM 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTTTGTCCCCTACCAGGTGTCCC Direct Loss 1 0.159677123440853 1 0.0646559000015259 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458466 nonsynonymous SNV 0.733 4 21 hm5C_associated_SNPs_1510 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 61bp
chr7 142458466 142458466 1 + C T SKCM 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTTTGTCCCCTACCAGGTGTCCC Direct Loss 1 0.159677123440853 1 0.0646559000015259 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458466 nonsynonymous SNV 0.733 4 21 hm5C_associated_SNPs_1510 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 100bp
chr19 1440440 1440440 1 + C T SKCM 1440440 + 1440420 1440460 41 ATCGGGGCCACCCACTCCTCCCGCTTCATCCCTCTCAAGTA ATCGGGGCCACCCACTCCTCTCGCTTCATCCCTCTCAAGTA Direct Loss 1 0.244523004087097 1 0.101245164871216 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS15 ENSG00000115268 CDS Human protein_coding chr19:1440440 chr19:1440440 synonymous SNV . 0 21 hm5C_associated_SNPs_1511 0 0 1 0 1 RPS15 chr19:1440348 3'AG 1440348 Downstream 93bp
chr1 21771644 21771644 1 + C T SKCM 21771644 + 21771624 21771664 41 AGGCCCTGATGTAGAAACTTCCCCATTCGGTGCACCAAGAG AGGCCCTGATGTAGAAACTTTCCCATTCGGTGCACCAAGAG Direct Loss 1 0.467399327975751 1 0.294727206230164 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBPF3 ENSG00000142794 CDS Human protein_coding chr1:21771644 chr1:21771644 nonsynonymous SNV 0.002 2 21 hm5C_associated_SNPs_1512 0 0 1 0 1 NBPF3 chr1:21771712 5'GT 21771712 Upstream 69bp
chr19 58722937 58722937 1 + C A SKCM 58722937 + 58722917 58722957 41 ATGTTACAGGAGCCAGTGACCTTCCAGGATGTGGCTGTGGA ATGTTACAGGAGCCAGTGACATTCCAGGATGTGGCTGTGGA Direct Loss 1 0.190480071666681 1 0.243223905563354 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58722937 chr19:58722937 synonymous SNV . 0 21 hm5C_associated_SNPs_1513 0 0 1 0 1 ZNF274 chr19:58722926 3'AG 58722926 Downstream 12bp
chr12 132589002 132589002 1 + C T SKCM 132589002 + 132588982 132589022 41 GCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAGCA GCGTGCAGGTGCCCCTGGCCTTGGGCTGGGCCTCTGCAGCA Direct Loss 1 0.919858888873423 1 0.465875089168549 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132589002 chr12:132589002 nonsynonymous SNV 0.436 3 21 hm5C_associated_SNPs_1514 0 0 1 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 80bp
chr19 11215952 11215952 1 + C T SKCM 11215952 + 11215932 11215972 41 ACGATGGGAAGTGCATCTCTCGGCAGTTCGTCTGTGACTCA ACGATGGGAAGTGCATCTCTTGGCAGTTCGTCTGTGACTCA Direct Loss 1 0.796912744916317 1 0.739658236503601 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LDLR ENSG00000130164 CDS Human protein_coding chr19:11215952 chr19:11215952 nonsynonymous SNV 0.002 3 21 hm5C_associated_SNPs_1515 2 0 1 0 1 LDLR chr19:11215896 3'AG 11215896 Downstream 57bp
chr11 74329633 74329633 1 + C T SKCM 74329633 + 74329613 74329653 41 CCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCAAAAAGTT CCTAGAGCTCCTGCTGAATCTTCTTCGTCTTCCAAAAAGTT Direct Loss 1 0.137266820641725 1 0.0437606275081635 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329633 chr11:74329633 synonymous SNV . 0 21 hm5C_associated_SNPs_1518 0 0 0 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 52bp
chr7 91714906 91714906 1 + C T SKCM 91714906 + 91714886 91714926 41 CCATTCTATTCAGCAGGTTTCAGAACCTTGGCTAGAAGAGA CCATTCTATTCAGCAGGTTTTAGAACCTTGGCTAGAAGAGA Direct Loss 1 0.32114535665738 1 0.752610683441162 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714906 chr7:91714906 nonsynonymous SNV 0.835 0 21 hm5C_associated_SNPs_1519 0 0 1 0 2 AKAP9 chr7:91714809 3'AG 91714809 Downstream 98bp
chr7 91714906 91714906 1 + C T SKCM 91714906 + 91714886 91714926 41 CCATTCTATTCAGCAGGTTTCAGAACCTTGGCTAGAAGAGA CCATTCTATTCAGCAGGTTTTAGAACCTTGGCTAGAAGAGA Direct Loss 1 0.32114535665738 1 0.752610683441162 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714906 chr7:91714906 nonsynonymous SNV 0.835 0 21 hm5C_associated_SNPs_1519 0 0 1 0 2 AKAP9 chr7:91715000 5'GT 91715000 Upstream 95bp
chr7 73731903 73731903 1 + C T SKCM 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AAGCCCAGCGGCCTGAAGCCTCCCGGCCGTGGGGGGAAGCA Direct Loss 1 0.264202427512612 1 0.14037948846817 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731903 synonymous SNV . 0 21 hm5C_associated_SNPs_1521 0 0 0 0 2 CLIP2 chr7:73731810 3'AG 73731810 Downstream 94bp
chr7 73731903 73731903 1 + C T SKCM 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AAGCCCAGCGGCCTGAAGCCTCCCGGCCGTGGGGGGAAGCA Direct Loss 1 0.264202427512612 1 0.14037948846817 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731903 synonymous SNV . 0 21 hm5C_associated_SNPs_1521 0 0 0 0 2 CLIP2 chr7:73731997 5'GT 73731997 Upstream 95bp
chr12 52695783 52695783 1 + C T SKCM 52695783 + 52695763 52695803 41 GCCCGGCCGCTGCTGCATCACCGCCGCCCCCTACCGTGGCA GCCCGGCCGCTGCTGCATCATCGCCGCCCCCTACCGTGGCA Direct Loss 1 0.456672106303356 1 0.183201044797897 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KRT86 ENSG00000170442 CDS Human protein_coding chr12:52695783 chr12:52695783 nonsynonymous SNV 0.097 2 21 hm5C_associated_SNPs_1523 0 0 0 0 1 KRT86 chr12:52695697 3'AG 52695697 Downstream 87bp
chr20 19981314 19981314 1 + C T SKCM 19981314 + 19981294 19981334 41 GTTGCACAGGAAAGACCCTCCTTGTGAGACCTTACATCACC GTTGCACAGGAAAGACCCTCTTTGTGAGACCTTACATCACC Direct Loss 1 0.401875329826451 1 0.330641329288483 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIN2 ENSG00000132669 CDS Human protein_coding chr20:19981314 chr20:19981314 nonsynonymous SNV 0.962 0 21 hm5C_associated_SNPs_1524 0 0 0 0 1 RIN2 chr20:19981257 3'AG 19981257 Downstream 58bp
chr11 65338926 65338926 1 + C T SKCM 65338926 + 65338906 65338946 41 CTGGCCTCAGCCTCAGAGCTCCCCCTGGGCTCTCGACCTGC CTGGCCTCAGCCTCAGAGCTTCCCCTGGGCTCTCGACCTGC Direct Loss 1 0.284167958967624 1 0.0292687714099884 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SSSCA1 ENSG00000173465 CDS Human protein_coding chr11:65338926 chr11:65338926 synonymous SNV . 0 21 hm5C_associated_SNPs_1525 0 0 0 0 1 SSSCA1 chr11:65338862 3'AG 65338862 Downstream 65bp
chr3 140140054 140140054 1 + C T SKCM 140140054 + 140140034 140140074 41 CTACGACTGTGGACAGAAGCCCGCTGCTCAGGACACCCTGG CTACGACTGTGGACAGAAGCTCGCTGCTCAGGACACCCTGG Direct Loss 1 0.244529598079969 1 0.312380850315094 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLSTN2 ENSG00000158258 CDS Human protein_coding chr3:140140054 chr3:140140054 nonsynonymous SNV 0.847 1 21 hm5C_associated_SNPs_1526 0 0 0 0 2 CLSTN2 chr3:140139967 3'AG 140139967 Downstream 88bp
chr3 140140054 140140054 1 + C T SKCM 140140054 + 140140034 140140074 41 CTACGACTGTGGACAGAAGCCCGCTGCTCAGGACACCCTGG CTACGACTGTGGACAGAAGCTCGCTGCTCAGGACACCCTGG Direct Loss 1 0.244529598079969 1 0.312380850315094 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLSTN2 ENSG00000158258 CDS Human protein_coding chr3:140140054 chr3:140140054 nonsynonymous SNV 0.847 1 21 hm5C_associated_SNPs_1526 0 0 0 0 2 CLSTN2 chr3:140140116 5'GT 140140116 Upstream 63bp
chr5 71648516 71648516 1 + C G SKCM 71648516 + 71648496 71648536 41 TGGAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA TGGAAAACCTGATAAAGACTGTAAAAAATGCTGCAGAAGGA Direct Loss 1 0.454887353493558 1 0.534762024879456 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71648516 chr5:71648516 nonsynonymous SNV 0.003 4 21 hm5C_associated_SNPs_1528 0 0 1 4 2 PTCD2 chr5:71648468 3'AG 71648468 Downstream 49bp
chr5 71648516 71648516 1 + C G SKCM 71648516 + 71648496 71648536 41 TGGAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA TGGAAAACCTGATAAAGACTGTAAAAAATGCTGCAGAAGGA Direct Loss 1 0.454887353493558 1 0.534762024879456 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71648516 chr5:71648516 nonsynonymous SNV 0.003 4 21 hm5C_associated_SNPs_1528 0 0 1 4 2 PTCD2 chr5:71648581 5'GT 71648581 Upstream 66bp
chr1 22332214 22332214 1 + C T SKCM 22332214 + 22332194 22332234 41 CCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA CCTTGCTGTGAAGGAGGGCCTCGAGCAGGTGATCCCCATCA Direct Loss 1 0.54548293305935 1 0.622194945812225 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332214 chr1:22332214 nonsynonymous SNV 0.944 1 21 hm5C_associated_SNPs_1529 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 60bp
chr1 22332214 22332214 1 + C T SKCM 22332214 + 22332194 22332234 41 CCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA CCTTGCTGTGAAGGAGGGCCTCGAGCAGGTGATCCCCATCA Direct Loss 1 0.54548293305935 1 0.622194945812225 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332214 chr1:22332214 nonsynonymous SNV 0.944 1 21 hm5C_associated_SNPs_1529 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 76bp
chr20 44050042 44050042 1 + C T SKCM 44050042 + 44050022 44050062 41 GAGGCCCCCCCAGTGCCCTTCCTGCATGCCCAGCGGTACGT GAGGCCCCCCCAGTGCCCTTTCTGCATGCCCAGCGGTACGT Direct Loss 1 0.130357020993955 1 0.262338578701019 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44050042 chr20:44050042 synonymous SNV . 0 21 hm5C_associated_SNPs_1530 0 0 1 1 1 PIGT chr20:44050023 3'AG 44050023 Downstream 20bp
chr17 18143908 18143908 1 + C T SKCM 18143908 + 18143888 18143928 41 GCAGGGGCCCACCACGGGCCCACCATGTGGGCTGGCACCAA GCAGGGGCCCACCACGGGCCTACCATGTGGGCTGGCACCAA Direct Loss 1 0.776693110815222 1 0.046777069568634 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18143908 chr17:18143908 synonymous SNV . 0 21 hm5C_associated_SNPs_1531 0 0 1 0 1 LLGL1 chr17:18143892 3'AG 18143892 Downstream 17bp
chr8 145139185 145139185 1 + C T SKCM 145139185 + 145139165 145139205 41 CTTGACCTGCTCAATCTCTTCCAGACCTTCTGCCAGAAAGG CTTGACCTGCTCAATCTCTTTCAGACCTTCTGCCAGAAAGG Direct Loss 1 0.533389526791618 1 0.402518838644028 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139185 chr8:145139185 synonymous SNV . 0 21 hm5C_associated_SNPs_1532 0 0 1 0 1 GPAA1 chr8:145139233 5'GT 145139233 Upstream 49bp
chr3 183899730 183899730 1 + C T SKCM 183899730 + 183899710 183899750 41 ACCAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAGT ACCAAGGACATCATCCTTCCTTTCCGGGTGATCCCGCTAGT Direct Loss 1 0.283393756118923 1 0.0242071449756622 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899730 chr3:183899730 synonymous SNV . 0 21 hm5C_associated_SNPs_1535 0 0 1 0 1 AP2M1 chr3:183899700 3'AG 183899700 Downstream 31bp
chr2 127453565 127453565 1 + C T SKCM 127453565 + 127453545 127453585 41 GTCCTAGTCTCCCTCCTCTTCGTCATGCTGCGCTACATGTA GTCCTAGTCTCCCTCCTCTTTGTCATGCTGCGCTACATGTA Direct Loss 1 0.705268379990501 1 0.181394636631012 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control GYPC ENSG00000136732 CDS Human protein_coding chr2:127453565 chr2:127453565 synonymous SNV . 0 21 hm5C_associated_SNPs_1536 0 0 1 2 1 GYPC chr2:127453522 3'AG 127453522 Downstream 44bp
chr7 142460392 142460392 1 + C T SKCM 142460392 + 142460372 142460412 41 ACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA ACATGTTCTGTGTGGGCTTCTTTGAGGGAGGCAAGGATTCA Direct Loss 1 0.587741356857562 1 0.448716104030609 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460392 chr7:142460392 nonsynonymous SNV 0.068 5 21 hm5C_associated_SNPs_1537 0 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 27bp
chr15 79185883 79185883 1 + C T SKCM 79185883 + 79185863 79185903 41 ATATTTTTGTCTTCATAGCTCTTTTATCTTCCTGCCAAGAA ATATTTTTGTCTTCATAGCTTTTTTATCTTCCTGCCAAGAA Direct Loss 1 0.0473409962647932 1 0.0380460321903229 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79185883 chr15:79185883 synonymous SNV . 0 21 hm5C_associated_SNPs_1538 0 0 1 0 2 MORF4L1 chr15:79185881 3'AG 79185881 Downstream 3bp
chr15 79185883 79185883 1 + C T SKCM 79185883 + 79185863 79185903 41 ATATTTTTGTCTTCATAGCTCTTTTATCTTCCTGCCAAGAA ATATTTTTGTCTTCATAGCTTTTTTATCTTCCTGCCAAGAA Direct Loss 1 0.0473409962647932 1 0.0380460321903229 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79185883 chr15:79185883 synonymous SNV . 0 21 hm5C_associated_SNPs_1538 0 0 1 0 2 MORF4L1 chr15:79185969 5'GT 79185969 Upstream 87bp
chr19 10793360 10793360 1 + C T SKCM 10793360 + 10793340 10793380 41 CCACCCCTAGTGCGGCCTTTCCCTCAGATGCCACTGCCGAG CCACCCCTAGTGCGGCCTTTTCCTCAGATGCCACTGCCGAG Direct Loss 1 0.13740155378712 1 0.142955392599106 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10793360 chr19:10793360 nonsynonymous SNV 0.589 0 21 hm5C_associated_SNPs_1541 0 0 1 0 1 ILF3 chr19:10793380 5'GT 10793380 Upstream 21bp
chrX 107834422 107834422 1 + C T SKCM 107834422 + 107834402 107834442 41 AGCCTGGGGCTCCTGGGCTTCCAGGGCCTCCTGGCCCTGCT AGCCTGGGGCTCCTGGGCTTTCAGGGCCTCCTGGCCCTGCT Direct Loss 1 0.629217455919277 1 0.859161734580994 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107834422 chrX:107834422 nonsynonymous SNV 0.982 2 21 hm5C_associated_SNPs_1542 0 0 1 0 1 COL4A5 chrX:107834461 5'GT 107834461 Upstream 40bp
chr1 104115858 104115858 1 + C T SKCM 104115858 + 104115838 104115878 41 AAAACTGGAAGTGGAGATATCGAGAACTACAATGATGCTAC AAAACTGGAAGTGGAGATATTGAGAACTACAATGATGCTAC Direct Loss 1 0.858643942651135 1 0.93282163143158 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control AMY2B ENSG00000240038 CDS Human protein_coding chr1:104115858 chr1:104115858 synonymous SNV . 0 21 hm5C_associated_SNPs_1543 0 0 0 0 1 AMY2B chr1:104115882 5'GT 104115882 Upstream 25bp
chr7 69583186 69583186 1 + C T SKCM 69583186 + 69583166 69583206 41 AGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA AGTGGAGAATCCAAGGGCTTTCACCGGAGCAGCTCTCGGGA Direct Loss 1 0.116035399695259 1 0.125804573297501 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69583186 chr7:69583186 synonymous SNV . 0 21 hm5C_associated_SNPs_1545 0 0 0 0 2 AUTS2 chr7:69583118 3'AG 69583118 Downstream 69bp
chr7 69583186 69583186 1 + C T SKCM 69583186 + 69583166 69583206 41 AGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA AGTGGAGAATCCAAGGGCTTTCACCGGAGCAGCTCTCGGGA Direct Loss 1 0.116035399695259 1 0.125804573297501 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69583186 chr7:69583186 synonymous SNV . 0 21 hm5C_associated_SNPs_1545 0 0 0 0 2 AUTS2 chr7:69583219 5'GT 69583219 Upstream 34bp
chr19 11145668 11145668 1 + C T SKCM 11145668 + 11145648 11145688 41 TCATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGAC TCATGGAGGAGGACGAGCTCTCCTCGTGGATCATCAAGGAC Direct Loss 1 0.0885890459858501 1 0.127061396837234 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145668 chr19:11145668 nonsynonymous SNV 0.260 5 21 hm5C_associated_SNPs_1546 0 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 79bp
chr10 73566026 73566026 1 + C T SKCM 73566026 + 73566006 73566046 41 GATGACAACGAACCCCTTTTCGTGAGGCCTCCAGTGAGCTT GATGACAACGAACCCCTTTTTGTGAGGCCTCCAGTGAGCTT Direct Loss 1 0.582762396377964 1 0.361685991287231 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH23 ENSG00000107736 CDS Human protein_coding chr10:73566026 chr10:73566026 synonymous SNV . 0 21 hm5C_associated_SNPs_1547 0 0 0 0 1 CDH23 chr10:73566038 5'GT 73566038 Upstream 13bp
chr19 49404083 49404083 1 + C T SKCM 49404083 + 49404063 49404103 41 TCTGGGCCCCGAGGAACCCTCCTTCTGTTGCCGCTGCTGCT TCTGGGCCCCGAGGAACCCTTCTTCTGTTGCCGCTGCTGCT Direct Loss 1 0.0302775516167121 1 0.0693960785865784 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49404083 chr19:49404083 synonymous SNV . 0 21 hm5C_associated_SNPs_1549 0 0 1 0 1 NUCB1 chr19:49404043 3'AG 49404043 Downstream 41bp
chr1 44128686 44128686 1 + C T SKCM 44128686 + 44128666 44128706 41 CTTTGGCATGTGGAAGACATCCTTTGCTTGGCACACTGAAG CTTTGGCATGTGGAAGACATTCTTTGCTTGGCACACTGAAG Direct Loss 1 0.0649782967138782 1 0.129627794027328 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KDM4A ENSG00000066135 CDS Human protein_coding chr1:44128686 chr1:44128686 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_1550 0 0 1 0 1 KDM4A chr1:44128758 5'GT 44128758 Upstream 73bp
chr19 14030636 14030636 1 + C T SKCM 14030636 + 14030616 14030656 41 CGACTGGCCACCCAGGCTTCCCCCCAATCCAGGGCCTGGAG CGACTGGCCACCCAGGCTTCTCCCCAATCCAGGGCCTGGAG Direct Loss 1 0.0662865741762127 1 0.047151505947113 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14030636 chr19:14030636 nonsynonymous SNV 0.960 4 21 hm5C_associated_SNPs_1551 0 0 1 0 1 CC2D1A chr19:14030631 3'AG 14030631 Downstream 6bp
chr1 242030150 242030150 1 + C T SKCM 242030150 + 242030130 242030170 41 AGCCTGCCCATTCAAGAAGTCATAGTTGGGATGACAAAACA AGCCTGCCCATTCAAGAAGTTATAGTTGGGATGACAAAACA Direct Loss 1 0.252250202996228 1 0.0461404323577881 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXO1 ENSG00000174371 CDS Human protein_coding chr1:242030150 chr1:242030150 nonsynonymous SNV 0.939 0 21 hm5C_associated_SNPs_1553 0 0 1 0 1 EXO1 chr1:242030132 3'AG 242030132 Downstream 19bp
chr20 330383 330383 1 + C T SKCM 330383 + 330363 330403 41 CGCTCCTACCTGCACCTCTTCTATGAGGACTGTGCAGGCAC CGCTCCTACCTGCACCTCTTTTATGAGGACTGTGCAGGCAC Direct Loss 1 0.347229890565749 1 0.037634402513504 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NRSN2 ENSG00000125841 CDS Human protein_coding chr20:330383 chr20:330383 synonymous SNV . 0 21 hm5C_associated_SNPs_1554 0 0 1 0 1 NRSN2 chr20:330476 5'GT 330476 Upstream 94bp
chr10 129142002 129142002 1 + C T SKCM 129142002 + 129141982 129142022 41 AGTGCCAAGAGAGCCAAAATCCTTAACAAGTAAGTTCTCAT AGTGCCAAGAGAGCCAAAATTCTTAACAAGTAAGTTCTCAT Direct Loss 1 0.0722066597666548 1 0.523154199123383 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129142002 chr10:129142002 synonymous SNV . 0 21 hm5C_associated_SNPs_1555 0 0 0 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 93bp
chr10 129142002 129142002 1 + C T SKCM 129142002 + 129141982 129142022 41 AGTGCCAAGAGAGCCAAAATCCTTAACAAGTAAGTTCTCAT AGTGCCAAGAGAGCCAAAATTCTTAACAAGTAAGTTCTCAT Direct Loss 1 0.0722066597666548 1 0.523154199123383 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129142002 chr10:129142002 synonymous SNV . 0 21 hm5C_associated_SNPs_1555 0 0 0 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 9bp
chr7 150773192 150773192 1 + C T SKCM 150773192 + 150773172 150773212 41 TCCACAGCTGCCTCCCTGGCCTTCCCCTTCATCCTCATCCT TCCACAGCTGCCTCCCTGGCTTTCCCCTTCATCCTCATCCT Direct Loss 1 0.0738309867902636 1 0.00872054696083069 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150773192 chr7:150773192 synonymous SNV . 0 21 hm5C_associated_SNPs_1556 0 0 1 0 2 SLC4A2 chr7:150773100 3'AG 150773100 Downstream 93bp
chr7 150773192 150773192 1 + C T SKCM 150773192 + 150773172 150773212 41 TCCACAGCTGCCTCCCTGGCCTTCCCCTTCATCCTCATCCT TCCACAGCTGCCTCCCTGGCTTTCCCCTTCATCCTCATCCT Direct Loss 1 0.0738309867902636 1 0.00872054696083069 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150773192 chr7:150773192 synonymous SNV . 0 21 hm5C_associated_SNPs_1556 0 0 1 0 2 SLC4A2 chr7:150773273 5'GT 150773273 Upstream 82bp
chr10 5963508 5963508 1 + C T SKCM 5963508 + 5963488 5963528 41 CGGGTGACGGAAGGGGAATTCCCTTCAAGGATACATTTGAT CGGGTGACGGAAGGGGAATTTCCTTCAAGGATACATTTGAT Direct Loss 1 0.105026149444054 1 0.43174797296524 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963508 chr10:5963508 synonymous SNV . 0 21 hm5C_associated_SNPs_1557 0 0 1 0 2 FBXO18 chr10:5963411 3'AG 5963411 Downstream 98bp
chr10 5963508 5963508 1 + C T SKCM 5963508 + 5963488 5963528 41 CGGGTGACGGAAGGGGAATTCCCTTCAAGGATACATTTGAT CGGGTGACGGAAGGGGAATTTCCTTCAAGGATACATTTGAT Direct Loss 1 0.105026149444054 1 0.43174797296524 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963508 chr10:5963508 synonymous SNV . 0 21 hm5C_associated_SNPs_1557 0 0 1 0 2 FBXO18 chr10:5963532 5'GT 5963532 Upstream 25bp
chr8 38899577 38899577 1 + C T SKCM 38899577 + 38899557 38899597 41 CTGATGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTG CTGATGAAGCCTATAGTGCTTCCTCCTGTGGTAATAAGTTG Direct Loss 1 0.0966517395990056 1 0.115405201911926 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38899577 chr8:38899577 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1558 0 0 1 0 1 ADAM9 chr8:38899636 5'GT 38899636 Upstream 60bp
chr19 42373237 42373237 1 + C T SKCM 42373237 + 42373217 42373257 41 AAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCTGGAGGGGCT AAGAGTGTGGCCCGCCGGGTTCTCCAAGCCCTGGAGGGGCT Direct Loss 1 0.0573637192979553 1 0.322162747383118 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373237 chr19:42373237 synonymous SNV . 0 21 hm5C_associated_SNPs_1560 0 0 1 0 1 RPS19 chr19:42373284 5'GT 42373284 Upstream 48bp
chr2 238944540 238944540 1 + C T SKCM 238944540 + 238944520 238944560 41 ATCTTTTGAATTTTGATGATCCACTGAATATTGAAGCTGCA ATCTTTTGAATTTTGATGATTCACTGAATATTGAAGCTGCA Direct Loss 1 0.103340513995222 1 0.0557961463928223 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE2F ENSG00000184182;ENSG00000258984 CDS Human other chr2:238944540 chr2:238944540 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1561 0 0 1 0 2 UBE2F chr2:238944519 3'AG 238944519 Downstream 22bp
chr2 238944540 238944540 1 + C T SKCM 238944540 + 238944520 238944560 41 ATCTTTTGAATTTTGATGATCCACTGAATATTGAAGCTGCA ATCTTTTGAATTTTGATGATTCACTGAATATTGAAGCTGCA Direct Loss 1 0.103340513995222 1 0.0557961463928223 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE2F ENSG00000184182;ENSG00000258984 CDS Human other chr2:238944540 chr2:238944540 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1561 0 0 1 0 2 UBE2F chr2:238944581 5'GT 238944581 Upstream 42bp
chr3 184039162 184039162 1 + C T SKCM 184039162 + 184039142 184039182 41 CCCAGCCTTCGTCGCCTTCTCCGACCCCATCACCATCCCCA CCCAGCCTTCGTCGCCTTCTTCGACCCCATCACCATCCCCA Direct Loss 1 0.266278083495675 1 0.621188402175903 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184039162 chr3:184039162 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1562 0 0 1 0 1 EIF4G1 chr3:184039070 3'AG 184039070 Downstream 93bp
chr1 23236971 23236971 1 + C T SKCM 23236971 + 23236951 23236991 41 TGGACTGTTGGCAGAAGGACCGCAACCACCGGCCCAAGTTC TGGACTGTTGGCAGAAGGACTGCAACCACCGGCCCAAGTTC Direct Loss 1 0.510678231009189 1 0.347658634185791 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23236971 chr1:23236971 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1564 0 0 0 0 2 EPHB2 chr1:23236875 3'AG 23236875 Downstream 97bp
chr1 23236971 23236971 1 + C T SKCM 23236971 + 23236951 23236991 41 TGGACTGTTGGCAGAAGGACCGCAACCACCGGCCCAAGTTC TGGACTGTTGGCAGAAGGACTGCAACCACCGGCCCAAGTTC Direct Loss 1 0.510678231009189 1 0.347658634185791 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23236971 chr1:23236971 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1564 0 0 0 0 2 EPHB2 chr1:23237068 5'GT 23237068 Upstream 98bp
chr3 45557701 45557701 1 + C T SKCM 45557701 + 45557681 45557721 41 GTTGTGGAGCAGTATGGGATCGACACGATTCGGCTCTACAT GTTGTGGAGCAGTATGGGATTGACACGATTCGGCTCTACAT Direct Loss 1 0.805159675908356 1 0.197537928819656 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LARS2 ENSG00000011376 CDS Human protein_coding chr3:45557701 chr3:45557701 synonymous SNV . 0 21 hm5C_associated_SNPs_1565 0 0 0 0 1 LARS2 chr3:45557768 5'GT 45557768 Upstream 68bp
chr9 21859391 21859391 1 + C T SKCM 21859391 + 21859371 21859411 41 ACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCT ACCATACCTCAGATAGGGTCTACAGAATGGTCAGAAACCCT Direct Loss 1 0.272232770199806 1 0.320134401321411 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTAP ENSG00000099810 CDS Human protein_coding chr9:21859391 chr9:21859391 synonymous SNV . 0 21 hm5C_associated_SNPs_1566 0 0 1 0 2 MTAP chr9:21859302 3'AG 21859302 Downstream 90bp
chr9 21859391 21859391 1 + C T SKCM 21859391 + 21859371 21859411 41 ACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCT ACCATACCTCAGATAGGGTCTACAGAATGGTCAGAAACCCT Direct Loss 1 0.272232770199806 1 0.320134401321411 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTAP ENSG00000099810 CDS Human protein_coding chr9:21859391 chr9:21859391 synonymous SNV . 0 21 hm5C_associated_SNPs_1566 0 0 1 0 2 MTAP chr9:21859424 5'GT 21859424 Upstream 34bp
chr1 22332005 22332005 1 + C T SKCM 22332005 + 22331985 22332025 41 GGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGG GGCGGTAGCCTCATCGCCCCTGATTGGGTTGTGACTGCCGG Direct Loss 1 0.377403809388966 1 0.343665719032288 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332005 chr1:22332005 synonymous SNV . 0 21 hm5C_associated_SNPs_1567 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 66bp
chr1 22332005 22332005 1 + C T SKCM 22332005 + 22331985 22332025 41 GGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGG GGCGGTAGCCTCATCGCCCCTGATTGGGTTGTGACTGCCGG Direct Loss 1 0.377403809388966 1 0.343665719032288 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332005 chr1:22332005 synonymous SNV . 0 21 hm5C_associated_SNPs_1567 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 33bp
chr3 47041164 47041164 1 + C T SKCM 47041164 + 47041144 47041184 41 TGGCTGTGGTACAGCTGTCCCTCCAGGCTGACCTCAGCGTT TGGCTGTGGTACAGCTGTCCTTCCAGGCTGACCTCAGCGTT Direct Loss 1 0.624051238295611 1 0.882061958312988 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041164 chr3:47041164 nonsynonymous SNV 0.999 0 21 hm5C_associated_SNPs_1568 0 0 1 0 2 NBEAL2 chr3:47041120 3'AG 47041120 Downstream 45bp
chr3 47041164 47041164 1 + C T SKCM 47041164 + 47041144 47041184 41 TGGCTGTGGTACAGCTGTCCCTCCAGGCTGACCTCAGCGTT TGGCTGTGGTACAGCTGTCCTTCCAGGCTGACCTCAGCGTT Direct Loss 1 0.624051238295611 1 0.882061958312988 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041164 chr3:47041164 nonsynonymous SNV 0.999 0 21 hm5C_associated_SNPs_1568 0 0 1 0 2 NBEAL2 chr3:47041205 5'GT 47041205 Upstream 42bp
chr7 154738116 154738116 1 - G A SKCM 154738116 - 154738096 154738136 41 GATGTTCACAATGCAGAGTTCGTTCTGACTGGAGTGCTCAC GATGTTCACAATGCAGAGTTTGTTCTGACTGGAGTGCTCAC Direct Loss 1 0.0573314244915678 1 0.0151525437831879 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAXIP1 ENSG00000157212 CDS Human protein_coding chr7:154738116 chr7:154738116 synonymous SNV . 0 21 hm5C_associated_SNPs_1569 0 0 1 0 1 PAXIP1 chr7:154738135 3'AG 154738135 Downstream 20bp
chr22 39125543 39125543 1 + C T SKCM 39125543 + 39125523 39125563 41 GCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGG GCAGTCGACGAAAAAGGGCCTCCTGACGAAACGAGACGAGG Direct Loss 1 0.0280022225619047 1 0.159533441066742 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125543 chr22:39125543 nonsynonymous SNV 0.658 2 21 hm5C_associated_SNPs_1570 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 77bp
chr3 193361862 193361862 1 + C T SKCM 193361862 + 193361842 193361882 41 TCGTTTTGACCAAAGTAGACCTGGCAGAGAAAAATGTAGCC TCGTTTTGACCAAAGTAGACTTGGCAGAGAAAAATGTAGCC Direct Loss 1 0.387456381599388 1 0.258930206298828 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193361862 chr3:193361862 synonymous SNV . 0 21 hm5C_associated_SNPs_1571 0 0 1 0 1 OPA1 chr3:193361764 3'AG 193361764 Downstream 99bp
chr7 157041160 157041160 1 + C T SKCM 157041160 + 157041140 157041180 41 GTGGACATTCACCACCTCGCCTCCCTAGACCCTGAGGTGTA GTGGACATTCACCACCTCGCTTCCCTAGACCCTGAGGTGTA Direct Loss 1 0.345574386232546 1 0.245069712400436 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE3C ENSG00000009335 CDS Human protein_coding chr7:157041160 chr7:157041160 synonymous SNV . 0 21 hm5C_associated_SNPs_1572 0 0 1 0 1 UBE3C chr7:157041062 3'AG 157041062 Downstream 99bp
chr19 36216190 36216190 1 + C T SKCM 36216190 + 36216170 36216210 41 TCACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTG TCACCTCTGTGCCAGGGGGCTCCCCGATGGTGTGCTTGCTG Direct Loss 1 0.0469518066070237 1 0.111710965633392 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216190 chr19:36216190 nonsynonymous SNV 0.837 4 21 hm5C_associated_SNPs_1573 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 70bp
chr19 36216190 36216190 1 + C T SKCM 36216190 + 36216170 36216210 41 TCACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTG TCACCTCTGTGCCAGGGGGCTCCCCGATGGTGTGCTTGCTG Direct Loss 1 0.0469518066070237 1 0.111710965633392 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216190 chr19:36216190 nonsynonymous SNV 0.837 4 21 hm5C_associated_SNPs_1573 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 45bp
chr17 73567066 73567066 1 + C T SKCM 73567066 + 73567046 73567086 41 GCCAAGGCTGAGCGGCCAGGCCTCCAGAACATGGAGCTGGC GCCAAGGCTGAGCGGCCAGGTCTCCAGAACATGGAGCTGGC Direct Loss 1 0.0864619295813921 1 0.502017557621002 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73567066 chr17:73567066 synonymous SNV . 0 21 hm5C_associated_SNPs_1574 0 0 1 0 1 LLGL2 chr17:73567031 3'AG 73567031 Downstream 36bp
chr5 132400719 132400719 1 + C T SKCM 132400719 + 132400699 132400739 41 TCGTTCAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC TCGTTCAATTGGAGCAGCAGTTAAAAGCCAGGTAAAGTTTC Direct Loss 1 0.481125258369559 1 0.32221382856369 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132400719 chr5:132400719 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_1575 0 0 1 0 2 HSPA4 chr5:132400672 3'AG 132400672 Downstream 48bp
chr5 132400719 132400719 1 + C T SKCM 132400719 + 132400699 132400739 41 TCGTTCAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC TCGTTCAATTGGAGCAGCAGTTAAAAGCCAGGTAAAGTTTC Direct Loss 1 0.481125258369559 1 0.32221382856369 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132400719 chr5:132400719 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_1575 0 0 1 0 2 HSPA4 chr5:132400729 5'GT 132400729 Upstream 11bp
chr3 127340602 127340602 1 + C T SKCM 127340602 + 127340582 127340622 41 ACCTGAAAAGGAAAATGATCCTGCAGCAGTTCTGAGGCCCT ACCTGAAAAGGAAAATGATCTTGCAGCAGTTCTGAGGCCCT Direct Loss 1 0.619367542205927 1 0.611340582370758 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127340602 chr3:127340602 synonymous SNV . 0 21 hm5C_associated_SNPs_1577 0 0 1 0 1 MCM2 chr3:127340506 3'AG 127340506 Downstream 97bp
chr16 30081507 30081507 1 + C T SKCM 30081507 + 30081487 30081527 41 GGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGCC GGGCTGCTGCCAGCGAGTCCTTCTTCGTCTCTAACCACGCC Direct Loss 1 0.19957868799001 1 0.0488018095493317 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081507 chr16:30081507 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1578 0 0 1 0 1 ALDOA chr16:30081438 3'AG 30081438 Downstream 70bp
chr19 54652444 54652444 1 + C T SKCM 54652444 + 54652424 54652464 41 GCAGCCAGGCCTTGGGCCCCCCTTCCGGCCCCCACAACCCA GCAGCCAGGCCTTGGGCCCCTCTTCCGGCCCCCACAACCCA Direct Loss 1 0.0260624320670312 1 0.0496993958950043 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54652444 chr19:54652444 nonsynonymous SNV 0.069 0 21 hm5C_associated_SNPs_1579 0 0 1 0 2 CNOT3 chr19:54652355 3'AG 54652355 Downstream 90bp
chr19 54652444 54652444 1 + C T SKCM 54652444 + 54652424 54652464 41 GCAGCCAGGCCTTGGGCCCCCCTTCCGGCCCCCACAACCCA GCAGCCAGGCCTTGGGCCCCTCTTCCGGCCCCCACAACCCA Direct Loss 1 0.0260624320670312 1 0.0496993958950043 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54652444 chr19:54652444 nonsynonymous SNV 0.069 0 21 hm5C_associated_SNPs_1579 0 0 1 0 2 CNOT3 chr19:54652478 5'GT 54652478 Upstream 35bp
chr7 142459821 142459821 1 + C T SKCM 142459821 + 142459801 142459841 41 TCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGC TCTCTCTGCCCACCGCCCCTTCAGCCACTGGCACGAAGTGC Direct Loss 1 0.299908089715191 1 0.18728506565094 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459821 chr7:142459821 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_1580 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 58bp
chr3 119198909 119198909 1 + C T SKCM 119198909 + 119198889 119198929 41 TTGTTGAAGACATCAGAGTACCATGATATCATGTATCCTGC TTGTTGAAGACATCAGAGTATCATGATATCATGTATCCTGC Direct Loss 1 0.406581575250493 1 0.214266657829285 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119198909 chr3:119198909 synonymous SNV . 0 21 hm5C_associated_SNPs_1581 0 0 0 0 1 POGLUT1 chr3:119198898 3'AG 119198898 Downstream 12bp
chr9 135942496 135942496 1 + C T SKCM 135942496 + 135942476 135942516 41 TGGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGG TGGCTGAGAAGGTGGGTTGCTCTGTGGGTGATGCCGCCAGG Direct Loss 1 0.226089453521168 1 0.193350106477737 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942496 chr9:135942496 nonsynonymous SNV 0.827 3 21 hm5C_associated_SNPs_1582 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 22bp
chr12 109604784 109604784 1 + C T SKCM 109604784 + 109604764 109604804 41 TCACACGCTTTGGGGGGGATCGGGTCATCGAGAAGGTACAG TCACACGCTTTGGGGGGGATTGGGTCATCGAGAAGGTACAG Direct Loss 1 0.529968336429835 1 0.535374999046326 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109604784 chr12:109604784 nonsynonymous SNV 0.931 3 21 hm5C_associated_SNPs_1584 0 0 1 0 1 ACACB chr12:109604798 5'GT 109604798 Upstream 15bp
chr16 457472 457472 1 + C T SKCM 457472 + 457452 457492 41 GGCCGGCGCTGCCTCCCTCTCTCTATGGACGTCCGAGCGCC GGCCGGCGCTGCCTCCCTCTTTCTATGGACGTCCGAGCGCC Direct Loss 1 0.791846518488477 1 0.808662176132202 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout DECR2 ENSG00000242612 CDS Human other chr16:457472 chr16:457472 synonymous SNV . 0 21 hm5C_associated_SNPs_1585 0 0 1 0 3 DECR2 chr16:457380 3'AG 457380 Downstream 93bp
chr16 457472 457472 1 + C T SKCM 457472 + 457452 457492 41 GGCCGGCGCTGCCTCCCTCTCTCTATGGACGTCCGAGCGCC GGCCGGCGCTGCCTCCCTCTTTCTATGGACGTCCGAGCGCC Direct Loss 1 0.791846518488477 1 0.808662176132202 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout DECR2 ENSG00000242612 CDS Human protein_coding chr16:457472 chr16:457472 synonymous SNV . 0 21 hm5C_associated_SNPs_1585 0 0 1 0 3 DECR2 chr16:457425 3'AG 457425 Downstream 48bp
chr16 457472 457472 1 + C T SKCM 457472 + 457452 457492 41 GGCCGGCGCTGCCTCCCTCTCTCTATGGACGTCCGAGCGCC GGCCGGCGCTGCCTCCCTCTTTCTATGGACGTCCGAGCGCC Direct Loss 1 0.791846518488477 1 0.808662176132202 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout DECR2 ENSG00000242612 CDS Human protein_coding chr16:457472 chr16:457472 synonymous SNV . 0 21 hm5C_associated_SNPs_1585 0 0 1 0 3 DECR2 chr16:457560 5'GT 457560 Upstream 89bp
chr11 66812087 66812087 1 + C T SKCM 66812087 + 66812067 66812107 41 GCCGATGCTGTGGGGGAGATCCTGCTCTCCCTCAGCTACCT GCCGATGCTGTGGGGGAGATTCTGCTCTCCCTCAGCTACCT Direct Loss 1 0.287300328942245 1 0.118412405252457 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SYT12 ENSG00000173227 CDS Human protein_coding chr11:66812087 chr11:66812087 synonymous SNV . 0 21 hm5C_associated_SNPs_1586 0 0 0 0 2 SYT12 chr11:66812064 3'AG 66812064 Downstream 24bp
chr11 66812087 66812087 1 + C T SKCM 66812087 + 66812067 66812107 41 GCCGATGCTGTGGGGGAGATCCTGCTCTCCCTCAGCTACCT GCCGATGCTGTGGGGGAGATTCTGCTCTCCCTCAGCTACCT Direct Loss 1 0.287300328942245 1 0.118412405252457 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SYT12 ENSG00000173227 CDS Human protein_coding chr11:66812087 chr11:66812087 synonymous SNV . 0 21 hm5C_associated_SNPs_1586 0 0 0 0 2 SYT12 chr11:66812184 5'GT 66812184 Upstream 98bp
chr3 124053164 124053164 1 + C T SKCM 124053164 + 124053144 124053184 41 GCTGCAGCGGCCCCTGAGCCCTGGGAACTCCGAATCCCTCA GCTGCAGCGGCCCCTGAGCCTTGGGAACTCCGAATCCCTCA Direct Loss 1 0.656702039567734 1 0.721810221672058 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KALRN ENSG00000160145 CDS Human protein_coding chr3:124053164 chr3:124053164 nonsynonymous SNV 0.992 3 21 hm5C_associated_SNPs_1590 0 0 0 0 1 KALRN chr3:124053112 3'AG 124053112 Downstream 53bp
chr7 142458471 142458471 1 + C T SKCM 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTCTCCTACCAGGTGTCCCTGAAT Direct Loss 1 0.115153436448327 1 0.188923835754395 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458471 nonsynonymous SNV 0.908 4 21 hm5C_associated_SNPs_1594 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 66bp
chr7 142458471 142458471 1 + C T SKCM 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTCTCCTACCAGGTGTCCCTGAAT Direct Loss 1 0.115153436448327 1 0.188923835754395 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458471 nonsynonymous SNV 0.908 4 21 hm5C_associated_SNPs_1594 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 95bp
chr17 4797353 4797353 1 + C T SKCM 4797353 + 4797333 4797373 41 AGGAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACC AGGAGATCACCGGGACCCAGTCCCCATACGGGGGCGGCACC Direct Loss 1 0.084554879270806 1 0.141417235136032 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797353 chr17:4797353 nonsynonymous SNV 0.958 0 21 hm5C_associated_SNPs_1595 0 0 1 0 2 MINK1 chr17:4797283 3'AG 4797283 Downstream 71bp
chr17 4797353 4797353 1 + C T SKCM 4797353 + 4797333 4797373 41 AGGAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACC AGGAGATCACCGGGACCCAGTCCCCATACGGGGGCGGCACC Direct Loss 1 0.084554879270806 1 0.141417235136032 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797353 chr17:4797353 nonsynonymous SNV 0.958 0 21 hm5C_associated_SNPs_1595 0 0 1 0 2 MINK1 chr17:4797388 5'GT 4797388 Upstream 36bp
chr5 54654434 54654434 1 + C G SKCM 54654434 + 54654414 54654454 41 AATACATTCAGATGTCTGGTCGTGCTGGAAGGAGAGGAATG AATACATTCAGATGTCTGGTGGTGCTGGAAGGAGAGGAATG Direct Loss 1 0.21685676511542 1 0.174804210662842 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54654434 chr5:54654434 nonsynonymous SNV 0.999 5 21 hm5C_associated_SNPs_1596 0 0 1 0 2 SKIV2L2 chr5:54654401 3'AG 54654401 Downstream 34bp
chr5 54654434 54654434 1 + C G SKCM 54654434 + 54654414 54654454 41 AATACATTCAGATGTCTGGTCGTGCTGGAAGGAGAGGAATG AATACATTCAGATGTCTGGTGGTGCTGGAAGGAGAGGAATG Direct Loss 1 0.21685676511542 1 0.174804210662842 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54654434 chr5:54654434 nonsynonymous SNV 0.999 5 21 hm5C_associated_SNPs_1596 0 0 1 0 2 SKIV2L2 chr5:54654526 5'GT 54654526 Upstream 93bp
chr15 44127344 44127344 1 + C A SKCM 44127344 + 44127324 44127364 41 TTTTGCTTCTCTTCAGTTGTCTGAGGTTTGTGTGGAGTCTA TTTTGCTTCTCTTCAGTTGTATGAGGTTTGTGTGGAGTCTA Direct Loss 1 0.721385741403165 1 0.500319004058838 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR76 ENSG00000092470 CDS Human protein_coding chr15:44127344 chr15:44127344 nonsynonymous SNV 0.990 0 21 hm5C_associated_SNPs_1597 0 0 1 0 2 WDR76 chr15:44127259 3'AG 44127259 Downstream 86bp
chr15 44127344 44127344 1 + C A SKCM 44127344 + 44127324 44127364 41 TTTTGCTTCTCTTCAGTTGTCTGAGGTTTGTGTGGAGTCTA TTTTGCTTCTCTTCAGTTGTATGAGGTTTGTGTGGAGTCTA Direct Loss 1 0.721385741403165 1 0.500319004058838 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR76 ENSG00000092470 CDS Human protein_coding chr15:44127344 chr15:44127344 nonsynonymous SNV 0.990 0 21 hm5C_associated_SNPs_1597 0 0 1 0 2 WDR76 chr15:44127348 5'GT 44127348 Upstream 5bp
chr1 153750649 153750649 1 + C T STAD 153750649 + 153750629 153750669 41 CATCTCAGAGCAAGGCAGAACGTGGCCATAAGGTCCGGCTG CATCTCAGAGCAAGGCAGAATGTGGCCATAAGGTCCGGCTG Direct Loss 1 0.598002793478967 1 0.466935276985168 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750649 chr1:153750649 nonsynonymous SNV 0.125 0 21 hm5C_associated_SNPs_1598 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 13bp
chr12 53412624 53412624 1 + C T STAD 53412624 + 53412604 53412644 41 CGATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCA CGATGACGATGTGTATAGGGTGCCTCCAATTGACCGTTCCA Direct Loss 1 0.35772572706504 1 0.0308118164539337 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412624 chr12:53412624 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_1599 0 0 1 0 1 EIF4B chr12:53412582 3'AG 53412582 Downstream 43bp
chr7 73636001 73636001 1 + C T STAD 73636001 + 73635981 73636021 41 TGGAGTATTACAACTGGGGGCGGTTCTCGAAGCCCCCAGAA TGGAGTATTACAACTGGGGGTGGTTCTCGAAGCCCCCAGAA Direct Loss 1 0.200843292021834 1 0.143744260072708 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636001 chr7:73636001 nonsynonymous SNV 0.028 0 21 hm5C_associated_SNPs_1600 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 35bp
chr7 73636001 73636001 1 + C T STAD 73636001 + 73635981 73636021 41 TGGAGTATTACAACTGGGGGCGGTTCTCGAAGCCCCCAGAA TGGAGTATTACAACTGGGGGTGGTTCTCGAAGCCCCCAGAA Direct Loss 1 0.200843292021834 1 0.143744260072708 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636001 chr7:73636001 nonsynonymous SNV 0.028 0 21 hm5C_associated_SNPs_1600 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 22bp
chr15 63019352 63019352 1 + C T STAD 63019352 + 63019332 63019372 41 GCTCCTCCATGGCACAGCTGCTGACCTGTGCTGCTCAAGGC GCTCCTCCATGGCACAGCTGTTGACCTGTGCTGCTCAAGGC Direct Loss 1 0.122294746457037 1 0.330508232116699 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63019352 chr15:63019352 synonymous SNV . 0 21 hm5C_associated_SNPs_1602 0 0 0 0 2 TLN2 chr15:63019286 3'AG 63019286 Downstream 67bp
chr15 63019352 63019352 1 + C T STAD 63019352 + 63019332 63019372 41 GCTCCTCCATGGCACAGCTGCTGACCTGTGCTGCTCAAGGC GCTCCTCCATGGCACAGCTGTTGACCTGTGCTGCTCAAGGC Direct Loss 1 0.122294746457037 1 0.330508232116699 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63019352 chr15:63019352 synonymous SNV . 0 21 hm5C_associated_SNPs_1602 0 0 0 0 2 TLN2 chr15:63019388 5'GT 63019388 Upstream 37bp
chr1 36028847 36028847 1 + C A STAD 36028847 + 36028827 36028867 41 CCTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAGG CCTGACCGTTGAAGATGGGCACCGGGAGATCCTGATCAAGG Direct Loss 1 0.342004332338454 1 0.169945955276489 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028847 chr1:36028847 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1603 0 0 1 0 1 NCDN chr1:36028803 3'AG 36028803 Downstream 45bp
chr4 54244047 54244047 1 + C T STAD 54244047 + 54244027 54244067 41 CGCCTAGTGTCGGAGCTGAGCGGCGGGACCGGAGGGGATGA CGCCTAGTGTCGGAGCTGAGTGGCGGGACCGGAGGGGATGA Direct Loss 1 0.826991950411906 1 0.500424981117249 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FIP1L1 ENSG00000145216 CDS Human protein_coding chr4:54244047 chr4:54244047 synonymous SNV . 0 21 hm5C_associated_SNPs_1607 0 0 1 0 1 FIP1L1 chr4:54244090 5'GT 54244090 Upstream 44bp
chr1 158063221 158063221 1 + C T STAD 158063221 + 158063201 158063241 41 CCTTGGTATTCTTCCTCTACCGGCGCCGCAAAGGCAGTGAG CCTTGGTATTCTTCCTCTACTGGCGCCGCAAAGGCAGTGAG Direct Loss 1 0.652364577703962 1 0.328635990619659 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063221 chr1:158063221 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_1608 0 0 1 0 2 KIRREL chr1:158063129 3'AG 158063129 Downstream 93bp
chr1 158063221 158063221 1 + C T STAD 158063221 + 158063201 158063241 41 CCTTGGTATTCTTCCTCTACCGGCGCCGCAAAGGCAGTGAG CCTTGGTATTCTTCCTCTACTGGCGCCGCAAAGGCAGTGAG Direct Loss 1 0.652364577703962 1 0.328635990619659 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063221 chr1:158063221 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_1608 0 0 1 0 2 KIRREL chr1:158063236 5'GT 158063236 Upstream 16bp
chr11 64802601 64802601 1 + C T STAD 64802601 + 64802581 64802621 41 GCCACCCCCTCTGATCCCCACCCCGCCCCCTGATGACCCCC GCCACCCCCTCTGATCCCCATCCCGCCCCCTGATGACCCCC Direct Loss 1 0.175236440575255 1 0.625049948692322 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802601 chr11:64802601 nonsynonymous SNV 0.889 2 21 hm5C_associated_SNPs_1609 0 0 1 0 1 SNX15 chr11:64802678 5'GT 64802678 Upstream 78bp
chr12 112229169 112229169 1 + C T STAD 112229169 + 112229149 112229189 41 TTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGGA TTTGGCCCCACGGCTGGGGCTGCCATTGCCTCCCATGAGGA Direct Loss 1 0.741747578373163 1 0.263487786054611 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229169 chr12:112229169 synonymous SNV . 0 21 hm5C_associated_SNPs_1610 0 0 1 0 2 ALDH2 chr12:112229110 3'AG 112229110 Downstream 60bp
chr12 112229169 112229169 1 + C T STAD 112229169 + 112229149 112229189 41 TTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGGA TTTGGCCCCACGGCTGGGGCTGCCATTGCCTCCCATGAGGA Direct Loss 1 0.741747578373163 1 0.263487786054611 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human protein_coding chr12:112229169 chr12:112229169 synonymous SNV . 0 21 hm5C_associated_SNPs_1610 0 0 1 0 2 ALDH2 chr12:112229223 5'GT 112229223 Upstream 55bp
chr9 131830576 131830576 1 + C T STAD 131830576 + 131830556 131830596 41 CCTCGGTGCTCGCCGTCCTGCGGAACCGCTGGCTGTCAGAC CCTCGGTGCTCGCCGTCCTGTGGAACCGCTGGCTGTCAGAC Direct Loss 1 0.700585658154305 1 0.771766066551208 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830576 chr9:131830576 nonsynonymous SNV 0.975 4 21 hm5C_associated_SNPs_1611 0 0 1 0 2 MIGA2 chr9:131830477 3'AG 131830477 Downstream 100bp
chr9 131830576 131830576 1 + C T STAD 131830576 + 131830556 131830596 41 CCTCGGTGCTCGCCGTCCTGCGGAACCGCTGGCTGTCAGAC CCTCGGTGCTCGCCGTCCTGTGGAACCGCTGGCTGTCAGAC Direct Loss 1 0.700585658154305 1 0.771766066551208 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830576 chr9:131830576 nonsynonymous SNV 0.975 4 21 hm5C_associated_SNPs_1611 0 0 1 0 2 MIGA2 chr9:131830611 5'GT 131830611 Upstream 36bp
chr11 45948298 45948298 1 + C A STAD 45948298 + 45948278 45948318 41 CACAACTGGACGAGGAAGACCCCTGCTTTGAGTTCCGGCAG CACAACTGGACGAGGAAGACACCTGCTTTGAGTTCCGGCAG Direct Loss 1 0.23854760931589 1 0.56241774559021 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45948298 chr11:45948298 nonsynonymous SNV 0.038 0 21 hm5C_associated_SNPs_1613 0 0 0 0 1 LARGE2 chr11:45948262 3'AG 45948262 Downstream 37bp
chr11 64128952 64128952 1 + C A STAD 64128952 + 64128932 64128972 41 CCCTCCCAGAAAGAGCGGACCTTCTCCTTCTGTGGCACCAT CCCTCCCAGAAAGAGCGGACATTCTCCTTCTGTGGCACCAT Direct Loss 1 0.0483142559715163 1 0.0506971180438995 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64128952 chr11:64128952 synonymous SNV . 0 21 hm5C_associated_SNPs_1616 0 0 1 0 2 RPS6KA4 chr11:64128941 3'AG 64128941 Downstream 12bp
chr11 64128952 64128952 1 + C A STAD 64128952 + 64128932 64128972 41 CCCTCCCAGAAAGAGCGGACCTTCTCCTTCTGTGGCACCAT CCCTCCCAGAAAGAGCGGACATTCTCCTTCTGTGGCACCAT Direct Loss 1 0.0483142559715163 1 0.0506971180438995 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64128952 chr11:64128952 synonymous SNV . 0 21 hm5C_associated_SNPs_1616 0 0 1 0 2 RPS6KA4 chr11:64129021 5'GT 64129021 Upstream 70bp
chr3 142422814 142422814 1 + C A STAD 142422814 + 142422794 142422834 41 GAAGGGAATTCAACACTTACCCTGGCATTGGTATGGCAGCT GAAGGGAATTCAACACTTACACTGGCATTGGTATGGCAGCT Direct Loss 1 0.328135290781501 1 0.172278821468353 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLS1 ENSG00000120756 CDS Human protein_coding chr3:142422814 chr3:142422814 synonymous SNV . 0 21 hm5C_associated_SNPs_1618 0 0 1 0 1 PLS1 chr3:142422843 5'GT 142422843 Upstream 30bp
chr1 180049727 180049727 1 + C G STAD 180049727 + 180049707 180049747 41 ATAGGACTGGAGGACAATGTCACCTGCCTATCAAGTCCCAT ATAGGACTGGAGGACAATGTGACCTGCCTATCAAGTCCCAT Direct Loss 1 0.423933436964576 1 0.107810109853745 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180049727 chr1:180049727 nonsynonymous SNV 0.239 1 21 hm5C_associated_SNPs_1619 0 0 1 0 2 CEP350 chr1:180049652 3'AG 180049652 Downstream 76bp
chr1 180049727 180049727 1 + C G STAD 180049727 + 180049707 180049747 41 ATAGGACTGGAGGACAATGTCACCTGCCTATCAAGTCCCAT ATAGGACTGGAGGACAATGTGACCTGCCTATCAAGTCCCAT Direct Loss 1 0.423933436964576 1 0.107810109853745 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180049727 chr1:180049727 nonsynonymous SNV 0.239 1 21 hm5C_associated_SNPs_1619 0 0 1 0 2 CEP350 chr1:180049796 5'GT 180049796 Upstream 70bp
chr9 135942495 135942495 1 + C T STAD 135942495 + 135942475 135942515 41 GTGGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAG GTGGCTGAGAAGGTGGGTTGTCCTGTGGGTGATGCCGCCAG Direct Loss 1 0.293952552755167 1 0.0723320543766022 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942495 chr9:135942495 synonymous SNV . 0 21 hm5C_associated_SNPs_1620 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 21bp
chr7 87530094 87530094 1 + C T STAD 87530094 + 87530074 87530114 41 ATCAGAATCCAAACAGATGGCGATAAGTATGGTGGAACCTC ATCAGAATCCAAACAGATGGTGATAAGTATGGTGGAACCTC Direct Loss 1 0.497738254303623 1 0.136362761259079 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530094 chr7:87530094 synonymous SNV . 0 21 hm5C_associated_SNPs_1621 0 0 1 0 2 DBF4 chr7:87530079 3'AG 87530079 Downstream 16bp
chr7 87530094 87530094 1 + C T STAD 87530094 + 87530074 87530114 41 ATCAGAATCCAAACAGATGGCGATAAGTATGGTGGAACCTC ATCAGAATCCAAACAGATGGTGATAAGTATGGTGGAACCTC Direct Loss 1 0.497738254303623 1 0.136362761259079 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530094 chr7:87530094 synonymous SNV . 0 21 hm5C_associated_SNPs_1621 0 0 1 0 2 DBF4 chr7:87530193 5'GT 87530193 Upstream 100bp
chr21 45217944 45217944 1 + C T STAD 45217944 + 45217924 45217964 41 GAGGGTGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGTC GAGGGTGGTGAGCGTGGAGATGCGCTGTCCCAGAAGAGGTC Direct Loss 1 0.650743015646228 1 0.448181867599487 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217944 chr21:45217944 synonymous SNV . 0 21 hm5C_associated_SNPs_1622 0 0 1 0 1 RRP1 chr21:45217981 5'GT 45217981 Upstream 38bp
chr16 89970558 89970558 1 + C T STAD 89970558 + 89970538 89970578 41 TGCTCGAGTCTTGCAGTGTGCGGCCCGACGCCAGCGTTTCC TGCTCGAGTCTTGCAGTGTGTGGCCCGACGCCAGCGTTTCC Direct Loss 1 0.462541064453771 1 0.295044898986816 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89970558 chr16:89970558 nonsynonymous SNV 0.134 4 21 hm5C_associated_SNPs_1624 0 0 1 0 2 TCF25 chr16:89970526 3'AG 89970526 Downstream 33bp
chr16 89970558 89970558 1 + C T STAD 89970558 + 89970538 89970578 41 TGCTCGAGTCTTGCAGTGTGCGGCCCGACGCCAGCGTTTCC TGCTCGAGTCTTGCAGTGTGTGGCCCGACGCCAGCGTTTCC Direct Loss 1 0.462541064453771 1 0.295044898986816 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89970558 chr16:89970558 nonsynonymous SNV 0.134 4 21 hm5C_associated_SNPs_1624 0 0 1 0 2 TCF25 chr16:89970613 5'GT 89970613 Upstream 56bp
chr3 33887074 33887074 1 + C T STAD 33887074 + 33887054 33887094 41 CCAGCAAAGACCATGCAGGGCAGTGAGGTAAGAAGGACACT CCAGCAAAGACCATGCAGGGTAGTGAGGTAAGAAGGACACT Direct Loss 1 0.316237741394034 1 0.117112159729004 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33887074 chr3:33887074 synonymous SNV . 0 21 hm5C_associated_SNPs_1625 0 0 1 0 1 PDCD6IP chr3:33887080 5'GT 33887080 Upstream 7bp
chr9 103008902 103008902 1 + C T STAD 103008902 + 103008882 103008922 41 TCAAGTTTTCTTACAGGAAACGGTTAAAGTGTTTTTAAAAC TCAAGTTTTCTTACAGGAAATGGTTAAAGTGTTTTTAAAAC Direct Loss 1 0.0920518466474567 1 0.187394827604294 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INVS ENSG00000119509 CDS Human protein_coding chr9:103008902 chr9:103008902 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1626 0 0 0 0 2 INVS chr9:103008887 3'AG 103008887 Downstream 16bp
chr9 103008902 103008902 1 + C T STAD 103008902 + 103008882 103008922 41 TCAAGTTTTCTTACAGGAAACGGTTAAAGTGTTTTTAAAAC TCAAGTTTTCTTACAGGAAATGGTTAAAGTGTTTTTAAAAC Direct Loss 1 0.0920518466474567 1 0.187394827604294 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INVS ENSG00000119509 CDS Human protein_coding chr9:103008902 chr9:103008902 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1626 0 0 0 0 2 INVS chr9:103008898 3'AG 103008898 Downstream 5bp
chr16 69352776 69352776 1 + C T STAD 69352776 + 69352756 69352796 41 GGTGGAACGACGTGGCCGGGCTGGAGGGGGCCAAGGAGGCC GGTGGAACGACGTGGCCGGGTTGGAGGGGGCCAAGGAGGCC Direct Loss 1 0.941790317150454 1 0.332048386335373 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS4A ENSG00000132612;ENSG00000260914 CDS Human other chr16:69352776 chr16:69352776 synonymous SNV . 0 21 hm5C_associated_SNPs_1627 0 0 1 0 2 VPS4A chr16:69352726 3'AG 69352726 Downstream 51bp
chr16 69352776 69352776 1 + C T STAD 69352776 + 69352756 69352796 41 GGTGGAACGACGTGGCCGGGCTGGAGGGGGCCAAGGAGGCC GGTGGAACGACGTGGCCGGGTTGGAGGGGGCCAAGGAGGCC Direct Loss 1 0.941790317150454 1 0.332048386335373 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS4A ENSG00000132612;ENSG00000260914 CDS Human other chr16:69352776 chr16:69352776 synonymous SNV . 0 21 hm5C_associated_SNPs_1627 0 0 1 0 2 VPS4A chr16:69352845 5'GT 69352845 Upstream 70bp
chr20 42328453 42328453 1 + C T STAD 42328453 + 42328433 42328473 41 ACCATAAAGGAGGAGGAAAACAGTGAGGAGGAACTTGCAGC ACCATAAAGGAGGAGGAAAATAGTGAGGAGGAACTTGCAGC Direct Loss 1 0.603417768141215 1 0.473047822713852 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42328453 chr20:42328453 synonymous SNV . 0 21 hm5C_associated_SNPs_1628 0 0 1 0 1 MYBL2 chr20:42328397 3'AG 42328397 Downstream 57bp
chr17 79412070 79412070 1 + C T STAD 79412070 + 79412050 79412090 41 TGGACCAGGCGTCACTGTGGCCCCCCATGTACGGGGGCCGG TGGACCAGGCGTCACTGTGGTCCCCCATGTACGGGGGCCGG Direct Loss 1 0.0407548722025774 1 0.0555878281593323 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412070 chr17:79412070 nonsynonymous SNV 0.997 0 21 hm5C_associated_SNPs_1630 0 0 0 0 1 BAHCC1 chr17:79412041 3'AG 79412041 Downstream 30bp
chr19 15224376 15224376 1 + C T STAD 15224376 + 15224356 15224396 41 CCTGTCTCCCTTCAGATCCCCGCCTGCCCCGACAATCTCCA CCTGTCTCCCTTCAGATCCCTGCCTGCCCCGACAATCTCCA Direct Loss 1 0.219141718768733 1 0.0348339676856995 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15224376 chr19:15224376 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_1631 0 0 0 0 1 SYDE1 chr19:15224371 3'AG 15224371 Downstream 6bp
chr19 19605126 19605126 1 + C T STAD 19605126 + 19605106 19605146 41 ACAGGTTCTGTTGGGAGCACCGTGACCACCCCTCCCCCGCT ACAGGTTCTGTTGGGAGCACTGTGACCACCCCTCCCCCGCT Direct Loss 1 0.623446891787219 1 0.798513174057007 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19605126 chr19:19605126 synonymous SNV . 0 21 hm5C_associated_SNPs_1632 0 0 1 0 2 GATAD2A chr19:19605103 3'AG 19605103 Downstream 24bp
chr19 19605126 19605126 1 + C T STAD 19605126 + 19605106 19605146 41 ACAGGTTCTGTTGGGAGCACCGTGACCACCCCTCCCCCGCT ACAGGTTCTGTTGGGAGCACTGTGACCACCCCTCCCCCGCT Direct Loss 1 0.623446891787219 1 0.798513174057007 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19605126 chr19:19605126 synonymous SNV . 0 21 hm5C_associated_SNPs_1632 0 0 1 0 2 GATAD2A chr19:19605192 5'GT 19605192 Upstream 67bp
chr12 121858092 121858092 1 + C T STAD 121858092 + 121858072 121858112 41 ACAGAAGATGATGATGACGACGATGATGAGGATGATGATGA ACAGAAGATGATGATGACGATGATGATGAGGATGATGATGA Direct Loss 1 0.351173921902553 1 0.157333254814148 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNF34 ENSG00000170633 CDS Human protein_coding chr12:121858092 chr12:121858092 synonymous SNV . 0 21 hm5C_associated_SNPs_1633 0 0 1 0 2 RNF34 chr12:121858045 3'AG 121858045 Downstream 48bp
chr12 121858092 121858092 1 + C T STAD 121858092 + 121858072 121858112 41 ACAGAAGATGATGATGACGACGATGATGAGGATGATGATGA ACAGAAGATGATGATGACGATGATGATGAGGATGATGATGA Direct Loss 1 0.351173921902553 1 0.157333254814148 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNF34 ENSG00000170633 CDS Human protein_coding chr12:121858092 chr12:121858092 synonymous SNV . 0 21 hm5C_associated_SNPs_1633 0 0 1 0 2 RNF34 chr12:121858137 5'GT 121858137 Upstream 46bp
chr7 142460323 142460323 1 + C T STAD 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATGCTCCTGTGTTGAGCCAGGCTAAGTGTGAA Direct Loss 1 0.50319008512713 1 0.278302550315857 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460323 synonymous SNV . 0 21 hm5C_associated_SNPs_1634 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 42bp
chr7 142460323 142460323 1 + C T STAD 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATGCTCCTGTGTTGAGCCAGGCTAAGTGTGAA Direct Loss 1 0.50319008512713 1 0.278302550315857 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460323 synonymous SNV . 0 21 hm5C_associated_SNPs_1634 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 96bp
chr2 132257787 132257787 1 + C T STAD 132257787 + 132257767 132257807 41 ATTGTTTCAGGAGCTGCACACCATCTTCCCATGGCTGGTAG ATTGTTTCAGGAGCTGCACATCATCTTCCCATGGCTGGTAG Direct Loss 1 0.058719632415116 1 0.0606241524219513 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC150776 ENSG00000152117 ncRNA_exonic Human transcribed_processed_pseudogene chr2:132257787 chr2:132257787 . . 0 21 hm5C_associated_SNPs_1635 0 0 1 0 1 LOC150776 chr2:132257777 3'AG 132257777 Downstream 11bp
chr7 930607 930607 1 + C T STAD 930607 + 930587 930627 41 GTATCATTTTCTGCACTCAGCGGACGGGGAGGGCTGTGCCA GTATCATTTTCTGCACTCAGTGGACGGGGAGGGCTGTGCCA Direct Loss 1 0.460078747234151 1 0.770468354225159 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GET4 ENSG00000239857 CDS Human protein_coding chr7:930607 chr7:930607 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_1636 0 0 1 0 2 GET4 chr7:930565 3'AG 930565 Downstream 43bp
chr7 930607 930607 1 + C T STAD 930607 + 930587 930627 41 GTATCATTTTCTGCACTCAGCGGACGGGGAGGGCTGTGCCA GTATCATTTTCTGCACTCAGTGGACGGGGAGGGCTGTGCCA Direct Loss 1 0.460078747234151 1 0.770468354225159 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GET4 ENSG00000239857 CDS Human protein_coding chr7:930607 chr7:930607 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_1636 0 0 1 0 2 GET4 chr7:930703 5'GT 930703 Upstream 97bp
chr12 132329865 132329865 1 + C T STAD 132329865 + 132329845 132329885 41 AGTACTTCTGGCGGCTGACGCGGGACCGGCACCTGGTGTCC AGTACTTCTGGCGGCTGACGTGGGACCGGCACCTGGTGTCC Direct Loss 1 0.938585099950395 1 0.904023766517639 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132329865 chr12:132329865 nonsynonymous SNV 0.951 4 21 hm5C_associated_SNPs_1637 0 0 1 0 1 MMP17 chr12:132329842 3'AG 132329842 Downstream 24bp
chr3 148559690 148559690 1 + C T STAD 148559690 + 148559670 148559710 41 GAGTGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGA GAGTGGATTTCTCCTGCATTTTGCCAGTGGTTTGTAAGAGA Direct Loss 1 0.502197195113983 1 0.257190704345703 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559690 chr3:148559690 synonymous SNV . 0 21 hm5C_associated_SNPs_1639 0 0 0 0 2 CPB1 chr3:148559610 3'AG 148559610 Downstream 81bp
chr3 148559690 148559690 1 + C T STAD 148559690 + 148559670 148559710 41 GAGTGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGA GAGTGGATTTCTCCTGCATTTTGCCAGTGGTTTGTAAGAGA Direct Loss 1 0.502197195113983 1 0.257190704345703 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559690 chr3:148559690 synonymous SNV . 0 21 hm5C_associated_SNPs_1639 0 0 0 0 2 CPB1 chr3:148559711 5'GT 148559711 Upstream 22bp
chrX 70517705 70517705 1 + C T STAD 70517705 + 70517685 70517725 41 GGCAGGAGGAAGAGCGCAGGCGCCGTGAAGAAGAGATGCGG GGCAGGAGGAAGAGCGCAGGTGCCGTGAAGAAGAGATGCGG Direct Loss 1 0.833418513557723 1 0.382883697748184 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517705 chrX:70517705 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1642 0 0 1 0 2 NONO chrX:70517686 3'AG 70517686 Downstream 20bp
chrX 70517705 70517705 1 + C T STAD 70517705 + 70517685 70517725 41 GGCAGGAGGAAGAGCGCAGGCGCCGTGAAGAAGAGATGCGG GGCAGGAGGAAGAGCGCAGGTGCCGTGAAGAAGAGATGCGG Direct Loss 1 0.833418513557723 1 0.382883697748184 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517705 chrX:70517705 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1642 0 0 1 0 2 NONO chrX:70517788 5'GT 70517788 Upstream 84bp
chr15 99491899 99491899 1 + C T STAD 99491899 + 99491879 99491919 41 CTTCGCTTCGTCATGGAGGGCGGCCTTCTGGACAAGCCAGA CTTCGCTTCGTCATGGAGGGTGGCCTTCTGGACAAGCCAGA Direct Loss 1 0.181555057992109 1 0.274376630783081 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IGF1R ENSG00000140443 CDS Human protein_coding chr15:99491899 chr15:99491899 synonymous SNV . 0 21 hm5C_associated_SNPs_1646 0 0 1 0 2 IGF1R chr15:99491803 3'AG 99491803 Downstream 97bp
chr15 99491899 99491899 1 + C T STAD 99491899 + 99491879 99491919 41 CTTCGCTTCGTCATGGAGGGCGGCCTTCTGGACAAGCCAGA CTTCGCTTCGTCATGGAGGGTGGCCTTCTGGACAAGCCAGA Direct Loss 1 0.181555057992109 1 0.274376630783081 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IGF1R ENSG00000140443 CDS Human protein_coding chr15:99491899 chr15:99491899 synonymous SNV . 0 21 hm5C_associated_SNPs_1646 0 0 1 0 2 IGF1R chr15:99491937 5'GT 99491937 Upstream 39bp
chr22 32275660 32275660 1 + C T STAD 32275660 + 32275640 32275680 41 TCCTGCCCTGGCTGCCTAGCCGGCCAGCCTCCTATGCAAGT TCCTGCCCTGGCTGCCTAGCTGGCCAGCCTCCTATGCAAGT Direct Loss 1 0.515789976803234 1 0.360283970832825 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32275660 chr22:32275660 nonsynonymous SNV 0.980 3 21 hm5C_associated_SNPs_1647 0 0 0 2 1 DEPDC5 chr22:32275738 5'GT 32275738 Upstream 79bp
chr1 228333243 228333243 1 + C T STAD 228333243 + 228333223 228333263 41 CCCAGGCCTGTGGTGCTGAGCGGGCCTTCGGGAGCTGGGAA CCCAGGCCTGTGGTGCTGAGTGGGCCTTCGGGAGCTGGGAA Direct Loss 1 0.726259156224914 1 0.908647775650024 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333243 chr1:228333243 nonsynonymous SNV 0.320 0 21 hm5C_associated_SNPs_1649 0 0 1 0 2 GUK1 chr1:228333212 3'AG 228333212 Downstream 32bp
chr1 228333243 228333243 1 + C T STAD 228333243 + 228333223 228333263 41 CCCAGGCCTGTGGTGCTGAGCGGGCCTTCGGGAGCTGGGAA CCCAGGCCTGTGGTGCTGAGTGGGCCTTCGGGAGCTGGGAA Direct Loss 1 0.726259156224914 1 0.908647775650024 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333243 chr1:228333243 nonsynonymous SNV 0.320 0 21 hm5C_associated_SNPs_1649 0 0 1 0 2 GUK1 chr1:228333325 5'GT 228333325 Upstream 83bp
chr17 41570095 41570095 1 + C T STAD 41570095 + 41570075 41570115 41 GTCGAAGCCGAGATCGAAACCGAGATCGAGACAGAGATAGG GTCGAAGCCGAGATCGAAACTGAGATCGAGACAGAGATAGG Direct Loss 1 0.814820893875038 1 0.723063349723816 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41570095 chr17:41570095 stopgain 0.634 1 21 hm5C_associated_SNPs_1650 0 0 1 0 1 DHX8 chr17:41570049 3'AG 41570049 Downstream 47bp
chr5 177633848 177633848 1 + C A STAD 177633848 + 177633828 177633868 41 TGGGGGTCTGAATCCTGAAGCCACTGAGGAAAAGATCAGGG TGGGGGTCTGAATCCTGAAGACACTGAGGAAAAGATCAGGG Direct Loss 1 0.135461716119628 1 0.175959467887878 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPAB ENSG00000197451 CDS Human protein_coding chr5:177633848 chr5:177633848 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1651 0 0 1 0 1 HNRNPAB chr5:177633891 5'GT 177633891 Upstream 44bp
chr17 45748109 45748109 1 + C T STAD 45748109 + 45748089 45748129 41 GCTGCTTATGAAGCTGCAGACGTTGCTGATGATCAGGAAGA GCTGCTTATGAAGCTGCAGATGTTGCTGATGATCAGGAAGA Direct Loss 1 0.174407254776066 1 0.100580871105194 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45748109 chr17:45748109 synonymous SNV . 0 21 hm5C_associated_SNPs_1652 0 0 1 0 2 KPNB1 chr17:45748068 3'AG 45748068 Downstream 42bp
chr17 45748109 45748109 1 + C T STAD 45748109 + 45748089 45748129 41 GCTGCTTATGAAGCTGCAGACGTTGCTGATGATCAGGAAGA GCTGCTTATGAAGCTGCAGATGTTGCTGATGATCAGGAAGA Direct Loss 1 0.174407254776066 1 0.100580871105194 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45748109 chr17:45748109 synonymous SNV . 0 21 hm5C_associated_SNPs_1652 0 0 1 0 2 KPNB1 chr17:45748198 5'GT 45748198 Upstream 90bp
chr2 46607459 46607459 1 + C T STAD 46607459 + 46607439 46607479 41 GCCCCATCTGCCCCGAGGAGCGGCTCTTGGCGGAGAACCCA GCCCCATCTGCCCCGAGGAGTGGCTCTTGGCGGAGAACCCA Direct Loss 1 0.431863886702954 1 0.266921013593674 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46607459 chr2:46607459 nonsynonymous SNV 0.338 2 21 hm5C_associated_SNPs_1653 0 0 1 0 1 EPAS1 chr2:46607366 3'AG 46607366 Downstream 94bp
chr12 31244687 31244687 1 + C T STAD 31244687 + 31244667 31244707 41 CTATCAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGG CTATCAGATGCTGCTGCATGTGGCCACTCGGCAGGCCGCGG Direct Loss 1 0.570831870713936 1 0.258034080266953 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244687 chr12:31244687 nonsynonymous SNV 0.253 0 21 hm5C_associated_SNPs_1654 0 0 1 0 1 DDX11 chr12:31244653 3'AG 31244653 Downstream 35bp
chr5 68490522 68490522 1 + C T STAD 68490522 + 68490502 68490542 41 GCAAGAAAAGCAAATCGAAGCGTATGTTATATTTAAAAATT GCAAGAAAAGCAAATCGAAGTGTATGTTATATTTAAAAATT Direct Loss 1 0.172883886103424 1 0.186961770057678 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CENPH ENSG00000153044 CDS Human protein_coding chr5:68490522 chr5:68490522 nonsynonymous SNV 0.969 0 21 hm5C_associated_SNPs_1656 0 0 0 0 2 CENPH chr5:68490474 3'AG 68490474 Downstream 49bp
chr5 68490522 68490522 1 + C T STAD 68490522 + 68490502 68490542 41 GCAAGAAAAGCAAATCGAAGCGTATGTTATATTTAAAAATT GCAAGAAAAGCAAATCGAAGTGTATGTTATATTTAAAAATT Direct Loss 1 0.172883886103424 1 0.186961770057678 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CENPH ENSG00000153044 CDS Human protein_coding chr5:68490522 chr5:68490522 nonsynonymous SNV 0.969 0 21 hm5C_associated_SNPs_1656 0 0 0 0 2 CENPH chr5:68490522 3'AG 68490522 Downstream 1bp
chr11 831623 831623 1 + C T STAD 831623 + 831603 831643 41 GGAAGGCTCTGACAACAGCCCGCCTGCCTGGGCCCACCTGC GGAAGGCTCTGACAACAGCCTGCCTGCCTGGGCCCACCTGC Direct Loss 1 0.568135962669783 1 0.0524554252624512 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:831623 chr11:831623 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_1658 0 0 1 1 1 CRACR2B chr11:831535 3'AG 831535 Downstream 89bp
chr19 36216189 36216189 1 + C T STAD 36216189 + 36216169 36216209 41 CTCACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCT CTCACCTCTGTGCCAGGGGGTCCCCCGATGGTGTGCTTGCT Direct Loss 1 0.0146964638348102 1 0.0611581206321716 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216189 chr19:36216189 synonymous SNV . 0 21 hm5C_associated_SNPs_1660 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 69bp
chr19 36216189 36216189 1 + C T STAD 36216189 + 36216169 36216209 41 CTCACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCT CTCACCTCTGTGCCAGGGGGTCCCCCGATGGTGTGCTTGCT Direct Loss 1 0.0146964638348102 1 0.0611581206321716 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216189 chr19:36216189 synonymous SNV . 0 21 hm5C_associated_SNPs_1660 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 46bp
chr15 45353327 45353327 1 + C T STAD 45353327 + 45353307 45353347 41 ATGAATTCTGCAAGATGGGCCGATACAATCTGTCACCTTCC ATGAATTCTGCAAGATGGGCTGATACAATCTGTCACCTTCC Direct Loss 1 0.225471880929368 1 0.19602957367897 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SORD ENSG00000140263 CDS Human protein_coding chr15:45353327 chr15:45353327 stopgain 0.933 1 21 hm5C_associated_SNPs_1661 0 0 1 0 2 SORD chr15:45353265 3'AG 45353265 Downstream 63bp
chr15 45353327 45353327 1 + C T STAD 45353327 + 45353307 45353347 41 ATGAATTCTGCAAGATGGGCCGATACAATCTGTCACCTTCC ATGAATTCTGCAAGATGGGCTGATACAATCTGTCACCTTCC Direct Loss 1 0.225471880929368 1 0.19602957367897 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SORD ENSG00000140263 CDS Human protein_coding chr15:45353327 chr15:45353327 stopgain 0.933 1 21 hm5C_associated_SNPs_1661 0 0 1 0 2 SORD chr15:45353424 5'GT 45353424 Upstream 98bp
chr11 14865490 14865490 1 + C T STAD 14865490 + 14865470 14865510 41 TCCTGCATTAGAATTGATGGCTCTATACGTGGCAGCTGCCA TCCTGCATTAGAATTGATGGTTCTATACGTGGCAGCTGCCA Direct Loss 1 0.434273154622335 1 0.39725661277771 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE3B ENSG00000152270 CDS Human protein_coding chr11:14865490 chr11:14865490 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1662 0 0 1 0 1 PDE3B chr11:14865572 5'GT 14865572 Upstream 83bp
chr1 22307570 22307570 1 + C T STAD 22307570 + 22307550 22307590 41 GTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCC GTGGTGTTGGGCGAGTACGATCGTGCTGTGAAGGAGGGCCC Direct Loss 1 0.301347382894046 1 0.688498735427856 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307570 chr1:22307570 synonymous SNV . 0 21 hm5C_associated_SNPs_1663 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 40bp
chr1 22307570 22307570 1 + C T STAD 22307570 + 22307550 22307590 41 GTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCC GTGGTGTTGGGCGAGTACGATCGTGCTGTGAAGGAGGGCCC Direct Loss 1 0.301347382894046 1 0.688498735427856 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307570 chr1:22307570 synonymous SNV . 0 21 hm5C_associated_SNPs_1663 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 96bp
chr6 4937916 4937916 1 + C T STAD 4937916 + 4937896 4937936 41 TTGACTTTATTTATTTTATACGACGTCTGACAGATGACAGG TTGACTTTATTTATTTTATATGACGTCTGACAGATGACAGG Direct Loss 1 0.392939855523714 1 0.0844229757785797 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDYL ENSG00000153046 CDS Human protein_coding chr6:4937916 chr6:4937916 stopgain 0.989 1 21 hm5C_associated_SNPs_1665 0 0 1 0 1 CDYL chr6:4937971 5'GT 4937971 Upstream 56bp
chrX 24086195 24086195 1 + C T STAD 24086195 + 24086175 24086215 41 TTTTTGCGGAGCATAATGATCTGCAATATGCTGCTCCAGGC TTTTTGCGGAGCATAATGATTTGCAATATGCTGCTCCAGGC Direct Loss 1 0.914968497782722 1 0.117312848567963 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EIF2S3 ENSG00000130741 CDS Human protein_coding chrX:24086195 chrX:24086195 synonymous SNV . 0 21 hm5C_associated_SNPs_1669 0 0 0 0 1 EIF2S3 chrX:24086225 5'GT 24086225 Upstream 31bp
chr5 109155379 109155379 1 + C T STAD 109155379 + 109155359 109155399 41 ATCTTTTAAAGATCTCTTTTCGAGCACATATACCGCCATTG ATCTTTTAAAGATCTCTTTTTGAGCACATATACCGCCATTG Direct Loss 1 0.201539001651533 1 0.395804792642593 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAN2A1 ENSG00000112893 CDS Human protein_coding chr5:109155379 chr5:109155379 stopgain 0.965 0 21 hm5C_associated_SNPs_1670 0 0 1 0 1 MAN2A1 chr5:109155370 3'AG 109155370 Downstream 10bp
chrX 64936689 64936689 1 + C T STAD 64936689 + 64936669 64936709 41 TCTCATCCTAGATCAGTGTGCGTGTGACCACCATGGATGCA TCTCATCCTAGATCAGTGTGTGTGTGACCACCATGGATGCA Direct Loss 1 0.274268191885304 1 0.0358991324901581 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MSN ENSG00000147065 CDS Human protein_coding chrX:64936689 chrX:64936689 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1672 0 0 1 0 2 MSN chrX:64936680 3'AG 64936680 Downstream 10bp
chrX 64936689 64936689 1 + C T STAD 64936689 + 64936669 64936709 41 TCTCATCCTAGATCAGTGTGCGTGTGACCACCATGGATGCA TCTCATCCTAGATCAGTGTGTGTGTGACCACCATGGATGCA Direct Loss 1 0.274268191885304 1 0.0358991324901581 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MSN ENSG00000147065 CDS Human protein_coding chrX:64936689 chrX:64936689 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1672 0 0 1 0 2 MSN chrX:64936763 5'GT 64936763 Upstream 75bp
chr10 75871668 75871668 1 + C T STAD 75871668 + 75871648 75871688 41 CTTCCCGCCATCGACAAAGCCGGGCATCCCAGCCGCTGAGG CTTCCCGCCATCGACAAAGCTGGGCATCCCAGCCGCTGAGG Direct Loss 1 0.499272997830423 1 0.771262645721436 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75871668 chr10:75871668 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1673 0 0 1 0 1 VCL chr10:75871667 3'AG 75871667 Downstream 2bp
chr3 49212180 49212180 1 + C T STAD 49212180 + 49212160 49212200 41 CAATTCCATTGACAGGGGGCCGCCAGGGCAAGCTCCCGGTG CAATTCCATTGACAGGGGGCTGCCAGGGCAAGCTCCCGGTG Direct Loss 1 0.660544629428357 1 0.145849704742432 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212180 chr3:49212180 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1675 0 0 1 0 1 KLHDC8B chr3:49212175 3'AG 49212175 Downstream 6bp
chr16 28884771 28884771 1 + C T STAD 28884771 + 28884751 28884791 41 TTACCATTCCTATCCAGAACCGACCACCTCCCATGACCCAC TTACCATTCCTATCCAGAACTGACCACCTCCCATGACCCAC Direct Loss 1 0.260479231618074 1 0.151291579008102 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28884771 chr16:28884771 nonsynonymous SNV 0.982 0 21 hm5C_associated_SNPs_1676 0 0 1 0 1 SH2B1 chr16:28884768 3'AG 28884768 Downstream 4bp
chr6 29911960 29911960 1 + C A STAD 29911960 + 29911940 29911980 41 CATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCC CATGAGGCCACCCTGAGGTGATGGGCCCTGGGCTTCTACCC Direct Loss 1 0.699027443666649 1 0.338055014610291 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911960 chr6:29911960 stopgain 0.096 0 21 hm5C_associated_SNPs_1677 0 0 0 0 1 HLA-A chr6:29911899 3'AG 29911899 Downstream 62bp
chr3 52011901 52011901 1 + C A STAD 52011901 + 52011881 52011921 41 CTCCAGACTGTGGTACAGACCTCCATGAGCCGGTCCCAGGT CTCCAGACTGTGGTACAGACATCCATGAGCCGGTCCCAGGT Direct Loss 1 0.782776219391217 1 0.968424022197723 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control ABHD14A ENSG00000114786;ENSG00000248487 CDS Human other chr3:52011901 chr3:52011901 synonymous SNV . 0 21 hm5C_associated_SNPs_1679 0 0 1 0 1 ABHD14A chr3:52011887 3'AG 52011887 Downstream 15bp
chr10 17277192 17277192 1 + C T STAD 17277192 + 17277172 17277212 41 AGTCCCTGGAACGCCAGATGCGTGAAATGGAAGAGAACTTT AGTCCCTGGAACGCCAGATGTGTGAAATGGAAGAGAACTTT Direct Loss 1 0.617312827736268 1 0.35546487569809 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277192 chr10:17277192 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_1680 0 0 1 0 1 VIM chr10:17277168 3'AG 17277168 Downstream 25bp
chr11 67018208 67018208 1 + C T STAD 67018208 + 67018188 67018228 41 AGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAGAGAA AGGTCTGGATGTCTGTCTTCTGCTACCTCAGCCGCAGAGAA Direct Loss 1 0.49550265110591 1 0.196584820747375 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KDM2A ENSG00000173120 CDS Human protein_coding chr11:67018208 chr11:67018208 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1682 0 0 1 0 1 KDM2A chr11:67018269 5'GT 67018269 Upstream 62bp
chr17 7160303 7160303 1 + C A STAD 7160303 + 7160283 7160323 41 ACCCTGGGCGGTACCATGGGCCAGGCCTCGGCCCACATCCT ACCCTGGGCGGTACCATGGGACAGGCCTCGGCCCACATCCT Direct Loss 1 0.456592206629622 1 0.319315433502197 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160303 chr17:7160303 synonymous SNV . 0 21 hm5C_associated_SNPs_1683 0 0 1 0 1 ELP5 chr17:7160357 5'GT 7160357 Upstream 55bp
chr11 65978630 65978630 1 + C T STAD 65978630 + 65978610 65978650 41 TCATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGC TCATTTCCTTAAGCGAGATGTCAACAAGCTGCAGATCATGC Direct Loss 1 0.0115105260789514 1 0.0981107652187347 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978630 chr11:65978630 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1685 0 0 1 0 1 PACS1 chr11:65978605 3'AG 65978605 Downstream 26bp
chr17 15929902 15929902 1 + C T STAD 15929902 + 15929882 15929922 41 CTACCCTGGATGCACAGGGCCGCTTTGATGAGGCCTATATT CTACCCTGGATGCACAGGGCTGCTTTGATGAGGCCTATATT Direct Loss 1 0.172031643662735 1 0.0236749947071075 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15929902 chr17:15929902 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_1686 0 0 1 0 1 TTC19 chr17:15929854 3'AG 15929854 Downstream 49bp
chr19 46519595 46519595 1 + C T STAD 46519595 + 46519575 46519615 41 GGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTTTGTGAA GGTGGTCGCGCGCTCCGCTTTGACCCCACGGCCTTTGTGAA Direct Loss 1 0.257500029120633 1 0.0552010536193848 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46519595 chr19:46519595 synonymous SNV . 0 21 hm5C_associated_SNPs_1687 0 0 0 0 2 CCDC61 chr19:46519576 3'AG 46519576 Downstream 20bp
chr19 46519595 46519595 1 + C T STAD 46519595 + 46519575 46519615 41 GGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTTTGTGAA GGTGGTCGCGCGCTCCGCTTTGACCCCACGGCCTTTGTGAA Direct Loss 1 0.257500029120633 1 0.0552010536193848 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46519595 chr19:46519595 synonymous SNV . 0 21 hm5C_associated_SNPs_1687 0 0 0 0 2 CCDC61 chr19:46519651 5'GT 46519651 Upstream 57bp
chr22 46681140 46681140 1 + C T STAD 46681140 + 46681120 46681160 41 AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCGCTGAC AGAACTTTATTCTTCCAGGGTGAATATGAGGCCGCGCTGAC Direct Loss 1 0.114177016556587 1 0.251281917095184 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC38 ENSG00000075234 CDS Human protein_coding chr22:46681140 chr22:46681140 synonymous SNV . 0 21 hm5C_associated_SNPs_1688 0 0 1 0 2 TTC38 chr22:46681138 3'AG 46681138 Downstream 3bp
chr22 46681140 46681140 1 + C T STAD 46681140 + 46681120 46681160 41 AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCGCTGAC AGAACTTTATTCTTCCAGGGTGAATATGAGGCCGCGCTGAC Direct Loss 1 0.114177016556587 1 0.251281917095184 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC38 ENSG00000075234 CDS Human protein_coding chr22:46681140 chr22:46681140 synonymous SNV . 0 21 hm5C_associated_SNPs_1688 0 0 1 0 2 TTC38 chr22:46681176 5'GT 46681176 Upstream 37bp
chr11 45891339 45891339 1 + C T STAD 45891339 + 45891319 45891359 41 GCTTCCTGACCCGCGGGGACCTCTGGGTCAGCTGGGAGAGC GCTTCCTGACCCGCGGGGACTTCTGGGTCAGCTGGGAGAGC Direct Loss 1 0.566786487113311 1 0.126127481460571 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45891339 chr11:45891339 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1689 0 0 0 0 1 CRY2 chr11:45891368 5'GT 45891368 Upstream 30bp
chr9 114429191 114429191 1 + C T STAD 114429191 + 114429171 114429211 41 CAGCTGGAAGTAACCCCTTCCGGGAGCCTAGATCCTGTGCT CAGCTGGAAGTAACCCCTTCTGGGAGCCTAGATCCTGTGCT Direct Loss 1 0.924399112815942 1 0.937126517295837 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC25-GNG10;GNG10 ENSG00000059769;ENSG00000242616;ENSG00000244115 CDS Human other chr9:114429191 chr9:114429191 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1690 0 0 0 0 2 DNAJC25-GNG10;GNG10 chr9:114429095 3'AG 114429095 Downstream 97bp
chr9 114429191 114429191 1 + C T STAD 114429191 + 114429171 114429211 41 CAGCTGGAAGTAACCCCTTCCGGGAGCCTAGATCCTGTGCT CAGCTGGAAGTAACCCCTTCTGGGAGCCTAGATCCTGTGCT Direct Loss 1 0.924399112815942 1 0.937126517295837 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC25-GNG10;GNG10 ENSG00000059769;ENSG00000242616;ENSG00000244115 CDS Human other chr9:114429191 chr9:114429191 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1690 0 0 0 0 2 DNAJC25-GNG10;GNG10 chr9:114429226 5'GT 114429226 Upstream 36bp
chr11 598413 598413 1 + C T STAD 598413 + 598393 598433 41 GTCTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGCGACTG GTCTTCCCTGCTGGATGAAGTCATCGAGGCTGTGGCGACTG Direct Loss 1 0.133087737610856 1 0.119356125593185 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:598413 chr11:598413 nonsynonymous SNV 0.042 0 21 hm5C_associated_SNPs_1691 0 0 1 0 2 PHRF1 chr11:598373 3'AG 598373 Downstream 41bp
chr11 598413 598413 1 + C T STAD 598413 + 598393 598433 41 GTCTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGCGACTG GTCTTCCCTGCTGGATGAAGTCATCGAGGCTGTGGCGACTG Direct Loss 1 0.133087737610856 1 0.119356125593185 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:598413 chr11:598413 nonsynonymous SNV 0.042 0 21 hm5C_associated_SNPs_1691 0 0 1 0 2 PHRF1 chr11:598502 5'GT 598502 Upstream 90bp
chr18 19209067 19209067 1 + C T STAD 19209067 + 19209047 19209087 41 GAAGAGGAAGAGGACGTGGCCGTGGCAGAGGAAGAGGGGGT GAAGAGGAAGAGGACGTGGCTGTGGCAGAGGAAGAGGGGGT Direct Loss 1 0.720211247619036 1 0.356079757213593 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRPD1 ENSG00000167088 CDS Human protein_coding chr18:19209067 chr18:19209067 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_1692 0 0 1 0 1 SNRPD1 chr18:19209023 3'AG 19209023 Downstream 45bp
chr12 53428436 53428436 1 + C T STAD 53428436 + 53428416 53428456 41 AAGAAACTCAGGAACGGGAACGGTCGAGGACAGGAAGTGAG AAGAAACTCAGGAACGGGAATGGTCGAGGACAGGAAGTGAG Direct Loss 1 0.247483067756465 1 0.465321868658066 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53428436 chr12:53428436 nonsynonymous SNV 0.993 3 21 hm5C_associated_SNPs_1693 0 0 1 0 2 EIF4B chr12:53428396 3'AG 53428396 Downstream 41bp
chr12 53428436 53428436 1 + C T STAD 53428436 + 53428416 53428456 41 AAGAAACTCAGGAACGGGAACGGTCGAGGACAGGAAGTGAG AAGAAACTCAGGAACGGGAATGGTCGAGGACAGGAAGTGAG Direct Loss 1 0.247483067756465 1 0.465321868658066 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53428436 chr12:53428436 nonsynonymous SNV 0.993 3 21 hm5C_associated_SNPs_1693 0 0 1 0 2 EIF4B chr12:53428493 5'GT 53428493 Upstream 58bp
chr8 9620699 9620699 1 + C T STAD 9620699 + 9620679 9620719 41 TCACTGTGTTAATCAGGGAACGATTTTGCTGGATCTTGCTC TCACTGTGTTAATCAGGGAATGATTTTGCTGGATCTTGCTC Direct Loss 1 0.0905660245491174 1 0.0645692348480225 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TNKS ENSG00000173273 CDS Human protein_coding chr8:9620699 chr8:9620699 nonsynonymous SNV 0.993 4 21 hm5C_associated_SNPs_1695 0 0 1 0 2 TNKS chr8:9620657 3'AG 9620657 Downstream 43bp
chr8 9620699 9620699 1 + C T STAD 9620699 + 9620679 9620719 41 TCACTGTGTTAATCAGGGAACGATTTTGCTGGATCTTGCTC TCACTGTGTTAATCAGGGAATGATTTTGCTGGATCTTGCTC Direct Loss 1 0.0905660245491174 1 0.0645692348480225 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TNKS ENSG00000173273 CDS Human protein_coding chr8:9620699 chr8:9620699 nonsynonymous SNV 0.993 4 21 hm5C_associated_SNPs_1695 0 0 1 0 2 TNKS chr8:9620754 5'GT 9620754 Upstream 56bp
chr19 18966037 18966037 1 + C T STAD 18966037 + 18966017 18966057 41 ACCATCGTCTACCACCTGGCCCGGCAAGGCAACGGGTAGGG ACCATCGTCTACCACCTGGCTCGGCAAGGCAACGGGTAGGG Direct Loss 1 0.21275765012132 1 0.16264072060585 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18966037 chr19:18966037 synonymous SNV . 0 21 hm5C_associated_SNPs_1696 0 0 1 0 1 UPF1 chr19:18966051 5'GT 18966051 Upstream 15bp
chr8 9564436 9564436 1 + C T STAD 9564436 + 9564416 9564456 41 TAGCCATGGCGCTGATCCTACATTAGTCAACTGCCATGGCA TAGCCATGGCGCTGATCCTATATTAGTCAACTGCCATGGCA Direct Loss 1 0.328286111801574 1 0.0324158370494843 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TNKS ENSG00000173273 CDS Human protein_coding chr8:9564436 chr8:9564436 nonsynonymous SNV 0.203 4 21 hm5C_associated_SNPs_1697 0 0 1 0 1 TNKS chr8:9564507 5'GT 9564507 Upstream 72bp
chr19 579629 579629 1 + C T STAD 579629 + 579609 579649 41 CGTGGTGCTGAAGGAGGACGCGCTGCCCGGCCAGAAAACGG CGTGGTGCTGAAGGAGGACGTGCTGCCCGGCCAGAAAACGG Direct Loss 1 0.460149597814337 1 0.178399533033371 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579629 chr19:579629 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_1698 0 0 1 0 1 BSG chr19:579656 5'GT 579656 Upstream 28bp
chr17 37359334 37359334 1 + C T STAD 37359334 + 37359314 37359354 41 GCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGAT GCCGGCTGCTCAGAAGATACTGTGAATCTAAGAAGATCGAT Direct Loss 1 0.766490297908492 1 0.327720820903778 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359334 chr17:37359334 nonsynonymous SNV 0.308 1 21 hm5C_associated_SNPs_1699 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 93bp
chr17 37359334 37359334 1 + C T STAD 37359334 + 37359314 37359354 41 GCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGAT GCCGGCTGCTCAGAAGATACTGTGAATCTAAGAAGATCGAT Direct Loss 1 0.766490297908492 1 0.327720820903778 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359334 chr17:37359334 nonsynonymous SNV 0.308 1 21 hm5C_associated_SNPs_1699 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 29bp
chr1 161326622 161326622 1 + C A THCA 161326622 + 161326602 161326642 41 ATCATACCTGGAATGGGATCCGACACTTGGTAAGTTAATTC ATCATACCTGGAATGGGATCAGACACTTGGTAAGTTAATTC Direct Loss 1 0.56625550107587 1 0.324494451284409 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SDHC ENSG00000143252 CDS Human protein_coding chr1:161326622 chr1:161326622 synonymous SNV . 0 21 hm5C_associated_SNPs_1705 0 0 1 0 1 SDHC chr1:161326630 5'GT 161326630 Upstream 9bp
chrX 84502590 84502590 1 + C T THCA 84502590 + 84502570 84502610 41 TTGCTAAGTATGGATTCAGGCGGTGGAAGTCTTGGATTGCA TTGCTAAGTATGGATTCAGGTGGTGGAAGTCTTGGATTGCA Direct Loss 1 0.640352287377389 1 0.410169094800949 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF711 ENSG00000147180 CDS Human protein_coding chrX:84502590 chrX:84502590 synonymous SNV . 0 21 hm5C_associated_SNPs_1707 0 0 1 0 2 ZNF711 chrX:84502553 3'AG 84502553 Downstream 38bp
chrX 84502590 84502590 1 + C T THCA 84502590 + 84502570 84502610 41 TTGCTAAGTATGGATTCAGGCGGTGGAAGTCTTGGATTGCA TTGCTAAGTATGGATTCAGGTGGTGGAAGTCTTGGATTGCA Direct Loss 1 0.640352287377389 1 0.410169094800949 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF711 ENSG00000147180 CDS Human protein_coding chrX:84502590 chrX:84502590 synonymous SNV . 0 21 hm5C_associated_SNPs_1707 0 0 1 0 2 ZNF711 chrX:84502657 5'GT 84502657 Upstream 68bp
chr5 134130604 134130604 1 + C A THCA 134130604 + 134130584 134130624 41 TATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGG TATGTTTTCAGCTACTTTCCACAGAGCTATGGAGGCTTTGG Direct Loss 1 0.657057037290551 1 0.262951016426086 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134130604 chr5:134130604 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1708 0 0 1 2 1 DDX46 chr5:134130540 3'AG 134130540 Downstream 65bp
chr7 98501140 98501140 1 + C A THCA 98501140 + 98501120 98501160 41 TCACCACAGAGCTGAGAAACCGTACGTCCAGCCTGTCTTGT TCACCACAGAGCTGAGAAACAGTACGTCCAGCCTGTCTTGT Direct Loss 1 0.107928092345648 1 0.236327350139618 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98501140 chr7:98501140 nonsynonymous SNV 0.964 1 21 hm5C_associated_SNPs_1709 0 0 1 0 1 TRRAP chr7:98501140 5'GT 98501140 Upstream 1bp
chr1 163042250 163042250 1 + C A THCA 163042250 + 163042230 163042270 41 TGATTCCTGTGAACACAATTCTTCCCACAACAAGAAGGACA TGATTCCTGTGAACACAATTATTCCCACAACAAGAAGGACA Direct Loss 1 0.119502930643676 1 0.0375369489192963 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RGS4 ENSG00000117152 CDS Human protein_coding chr1:163042250 chr1:163042250 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1710 0 0 0 0 2 RGS4 chr1:163042185 3'AG 163042185 Downstream 66bp
chr1 163042250 163042250 1 + C A THCA 163042250 + 163042230 163042270 41 TGATTCCTGTGAACACAATTCTTCCCACAACAAGAAGGACA TGATTCCTGTGAACACAATTATTCCCACAACAAGAAGGACA Direct Loss 1 0.119502930643676 1 0.0375369489192963 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RGS4 ENSG00000117152 CDS Human protein_coding chr1:163042250 chr1:163042250 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1710 0 0 0 0 2 RGS4 chr1:163042289 5'GT 163042289 Upstream 40bp
chr6 32135285 32135285 1 + C T THCA 32135285 + 32135265 32135305 41 TCTCTTCCTTTCTAGTGGGCCGGTCAGGCTGGGGCCTGGGT TCTCTTCCTTTCTAGTGGGCTGGTCAGGCTGGGGCCTGGGT Direct Loss 1 0.0693750440678022 1 0.142582684755325 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32135285 chr6:32135285 synonymous SNV . 0 21 hm5C_associated_SNPs_1711 0 0 1 0 1 EGFL8 chr6:32135280 3'AG 32135280 Downstream 6bp
chr13 27216438 27216438 1 + C A THCA 27216438 + 27216418 27216458 41 TGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCT TGAAGAGGAACATTGAGCCCAGGCACTTGTGCCGGGGAGCT Direct Loss 1 0.576205055867422 1 0.422069847583771 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216438 chr13:27216438 synonymous SNV . 0 21 hm5C_associated_SNPs_1712 0 0 1 0 1 WASF3 chr13:27216398 3'AG 27216398 Downstream 41bp
chr11 64055914 64055914 1 + C T THYM 64055914 + 64055894 64055934 41 CCCTGCTGGTGGGCTTCTTCCGGGTGCACCGGCCCCCACAG CCCTGCTGGTGGGCTTCTTCTGGGTGCACCGGCCCCCACAG Direct Loss 1 0.938729743926753 1 0.984865069389343 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GPR137 ENSG00000173264 CDS Human protein_coding chr11:64055914 chr11:64055914 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_1713 0 0 1 0 1 GPR137 chr11:64055940 5'GT 64055940 Upstream 27bp
chr10 134165250 134165250 1 + C T THYM 134165250 + 134165230 134165270 41 AGCAGGCTCTGATGGAGCAGCAGAGACGGTGAGTCCACACA AGCAGGCTCTGATGGAGCAGTAGAGACGGTGAGTCCACACA Direct Loss 1 0.659848380854833 1 0.718419075012207 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRRC27 ENSG00000148814 CDS Human protein_coding chr10:134165250 chr10:134165250 stopgain 0.074 0 21 hm5C_associated_SNPs_1714 0 0 0 0 1 LRRC27 chr10:134165257 5'GT 134165257 Upstream 8bp
chr15 93528742 93528742 1 + C T THYM 93528742 + 93528722 93528762 41 TCTCAGGCTCAGACAAATGACAGTGACTCTGACACTGAGTC TCTCAGGCTCAGACAAATGATAGTGACTCTGACACTGAGTC Direct Loss 1 0.247253508351605 1 0.0576527118682861 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93528742 chr15:93528742 synonymous SNV . 0 21 hm5C_associated_SNPs_1715 0 0 1 0 1 CHD2 chr15:93528728 3'AG 93528728 Downstream 15bp
chr7 99047906 99047906 1 + C T THYM 99047906 + 99047886 99047926 41 AGTTTCCCTGCAGGGGAGTGCAGCAACAAGGAATGTCCCTT AGTTTCCCTGCAGGGGAGTGTAGCAACAAGGAATGTCCCTT Direct Loss 1 0.785484376361464 1 0.164965718984604 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99047906 chr7:99047906 synonymous SNV . 0 21 hm5C_associated_SNPs_1716 0 0 1 0 2 CPSF4 chr7:99047899 3'AG 99047899 Downstream 8bp
chr7 99047906 99047906 1 + C T THYM 99047906 + 99047886 99047926 41 AGTTTCCCTGCAGGGGAGTGCAGCAACAAGGAATGTCCCTT AGTTTCCCTGCAGGGGAGTGTAGCAACAAGGAATGTCCCTT Direct Loss 1 0.785484376361464 1 0.164965718984604 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99047906 chr7:99047906 synonymous SNV . 0 21 hm5C_associated_SNPs_1716 0 0 1 0 2 CPSF4 chr7:99047994 5'GT 99047994 Upstream 89bp
chr3 40353054 40353054 1 + C A UCEC 40353054 + 40353034 40353074 41 GAAAAAACATCTGCCAGTTTCTCTTGGAGGTGAGTGATTGG GAAAAAACATCTGCCAGTTTATCTTGGAGGTGAGTGATTGG Direct Loss 1 0.390481301029526 1 0.08941450715065 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF1B ENSG00000114784 CDS Human protein_coding chr3:40353054 chr3:40353054 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_1717 0 0 1 0 2 EIF1B chr3:40352961 3'AG 40352961 Downstream 94bp
chr3 40353054 40353054 1 + C A UCEC 40353054 + 40353034 40353074 41 GAAAAAACATCTGCCAGTTTCTCTTGGAGGTGAGTGATTGG GAAAAAACATCTGCCAGTTTATCTTGGAGGTGAGTGATTGG Direct Loss 1 0.390481301029526 1 0.08941450715065 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF1B ENSG00000114784 CDS Human protein_coding chr3:40353054 chr3:40353054 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_1717 0 0 1 0 2 EIF1B chr3:40353062 5'GT 40353062 Upstream 9bp
chr12 6639957 6639957 1 + C T UCEC 6639957 + 6639937 6639977 41 CCAAGCAGGTAGCCAGAGAGCGCCATCAGCCAAGAAACCAT CCAAGCAGGTAGCCAGAGAGTGCCATCAGCCAAGAAACCAT Direct Loss 1 0.776417712838366 1 0.237690269947052 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6639957 chr12:6639957 nonsynonymous SNV 0.186 1 21 hm5C_associated_SNPs_1718 0 0 1 0 1 NCAPD2 chr12:6639983 5'GT 6639983 Upstream 27bp
chr1 120286511 120286511 1 + C T UCEC 120286511 + 120286491 120286531 41 AGTTTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTG AGTTTCTTCTATTTCCAGGCTTCCTGGCAGAGGCAGGCGTG Direct Loss 1 0.389821137300178 1 0.25118625164032 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286511 chr1:120286511 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1722 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 3bp
chr10 118313334 118313334 1 + C A UCEC 118313334 + 118313314 118313354 41 GGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTTG GGAAGGAGAACCAATGGGACAATTGGACGCATCACAGGTTG Direct Loss 1 0.474683504142492 1 0.148929715156555 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313334 chr10:118313334 synonymous SNV . 0 21 hm5C_associated_SNPs_1723 0 0 0 0 2 PNLIP chr10:118313239 3'AG 118313239 Downstream 96bp
chr10 118313334 118313334 1 + C A UCEC 118313334 + 118313314 118313354 41 GGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTTG GGAAGGAGAACCAATGGGACAATTGGACGCATCACAGGTTG Direct Loss 1 0.474683504142492 1 0.148929715156555 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313334 chr10:118313334 synonymous SNV . 0 21 hm5C_associated_SNPs_1723 0 0 0 0 2 PNLIP chr10:118313350 5'GT 118313350 Upstream 17bp
chr20 43052674 43052674 1 + C T UCEC 43052674 + 43052654 43052694 41 GTAGATGCCAAGGGGCTGAGCGATCCAGGGAAGATCAAGCG GTAGATGCCAAGGGGCTGAGTGATCCAGGGAAGATCAAGCG Direct Loss 1 0.158900650761587 1 0.229853510856628 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HNF4A ENSG00000101076 CDS Human protein_coding chr20:43052674 chr20:43052674 synonymous SNV . 0 21 hm5C_associated_SNPs_1724 0 0 1 0 1 HNF4A chr20:43052658 3'AG 43052658 Downstream 17bp
chr12 104378675 104378675 1 + C T UCEC 104378675 + 104378655 104378695 41 CGTTCAAGAGGTGCAATATACATTTGACCTACAGCTTGCCC CGTTCAAGAGGTGCAATATATATTTGACCTACAGCTTGCCC Direct Loss 1 0.233253737591919 1 0.0565225481987 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TDG ENSG00000139372 CDS Human protein_coding chr12:104378675 chr12:104378675 nonsynonymous SNV 0.985 3 21 hm5C_associated_SNPs_1725 0 0 1 0 1 TDG chr12:104378698 5'GT 104378698 Upstream 24bp
chr1 154317162 154317162 1 + C T UCEC 154317162 + 154317142 154317182 41 TCATCCCGCTCCGTAGGCAACGGCTTCACCTATCAGGACAA TCATCCCGCTCCGTAGGCAATGGCTTCACCTATCAGGACAA Direct Loss 1 0.350138741015653 1 0.131527841091156 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154317162 chr1:154317162 synonymous SNV . 0 21 hm5C_associated_SNPs_1726 0 0 1 0 2 ATP8B2 chr1:154317117 3'AG 154317117 Downstream 46bp
chr1 154317162 154317162 1 + C T UCEC 154317162 + 154317142 154317182 41 TCATCCCGCTCCGTAGGCAACGGCTTCACCTATCAGGACAA TCATCCCGCTCCGTAGGCAATGGCTTCACCTATCAGGACAA Direct Loss 1 0.350138741015653 1 0.131527841091156 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154317162 chr1:154317162 synonymous SNV . 0 21 hm5C_associated_SNPs_1726 0 0 1 0 2 ATP8B2 chr1:154317261 5'GT 154317261 Upstream 100bp
chr10 71146158 71146158 1 + C T UCEC 71146158 + 71146138 71146178 41 AGTCACCTTACTAAGGGATGCGATAAAAAGGAGAGAGGTAA AGTCACCTTACTAAGGGATGTGATAAAAAGGAGAGAGGTAA Direct Loss 1 0.184386496038155 1 0.242765486240387 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HK1 ENSG00000156515 CDS Human protein_coding chr10:71146158 chr10:71146158 nonsynonymous SNV 0.509 5 21 hm5C_associated_SNPs_1727 0 0 1 0 2 HK1 chr10:71146079 3'AG 71146079 Downstream 80bp
chr10 71146158 71146158 1 + C T UCEC 71146158 + 71146138 71146178 41 AGTCACCTTACTAAGGGATGCGATAAAAAGGAGAGAGGTAA AGTCACCTTACTAAGGGATGTGATAAAAAGGAGAGAGGTAA Direct Loss 1 0.184386496038155 1 0.242765486240387 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HK1 ENSG00000156515 CDS Human protein_coding chr10:71146158 chr10:71146158 nonsynonymous SNV 0.509 5 21 hm5C_associated_SNPs_1727 0 0 1 0 2 HK1 chr10:71146174 5'GT 71146174 Upstream 17bp
chr11 108205739 108205739 1 + C A UCEC 108205739 + 108205719 108205759 41 AAATCTGGTGACTATACAGTCATTTAAAGCAGAATTTCGCT AAATCTGGTGACTATACAGTAATTTAAAGCAGAATTTCGCT Direct Loss 1 0.024891188061693 1 0.0553851127624512 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108205739 chr11:108205739 stopgain 0.987 1 21 hm5C_associated_SNPs_1728 0 0 1 0 2 ATM chr11:108205696 3'AG 108205696 Downstream 44bp
chr11 108205739 108205739 1 + C A UCEC 108205739 + 108205719 108205759 41 AAATCTGGTGACTATACAGTCATTTAAAGCAGAATTTCGCT AAATCTGGTGACTATACAGTAATTTAAAGCAGAATTTCGCT Direct Loss 1 0.024891188061693 1 0.0553851127624512 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108205739 chr11:108205739 stopgain 0.987 1 21 hm5C_associated_SNPs_1728 0 0 1 0 2 ATM chr11:108205836 5'GT 108205836 Upstream 98bp
chr1 150280549 150280549 1 + C T UCEC 150280549 + 150280529 150280569 41 ATTATGAGAAGCCATGCCGCCGGCGACAGAGGGAAAGCTAT ATTATGAGAAGCCATGCCGCTGGCGACAGAGGGAAAGCTAT Direct Loss 1 0.697144229203619 1 0.715738356113434 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPS21 ENSG00000187145 CDS Human other chr1:150280549 chr1:150280549 nonsynonymous SNV 0.618 1 21 hm5C_associated_SNPs_1729 0 0 1 0 1 MRPS21 chr1:150280482 3'AG 150280482 Downstream 68bp
chrX 7171312 7171312 1 + C A UCEC 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGCATCAAGGCCGAACATAATCCTGGTGATGGCTGACGA Direct Loss 1 0.287793832196826 1 0.0630767643451691 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171312 synonymous SNV . 0 21 hm5C_associated_SNPs_1731 0 0 1 2 1 STS chrX:7171237 3'AG 7171237 Downstream 76bp
chr3 101311550 101311550 1 + C T UCEC 101311550 + 101311530 101311570 41 ATAACCAGAAGCTGTGGGAGCGAAATATAAAATCTCATCTT ATAACCAGAAGCTGTGGGAGTGAAATATAAAATCTCATCTT Direct Loss 1 0.756944228620462 1 0.500365436077118 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNP ENSG00000081154 CDS Human protein_coding chr3:101311550 chr3:101311550 stopgain 1.000 1 21 hm5C_associated_SNPs_1732 0 0 1 0 1 PCNP chr3:101311471 3'AG 101311471 Downstream 80bp
chr19 49878063 49878063 1 + C A UCEC 49878063 + 49878043 49878083 41 CTCCATCCCCGGGTGGCCTTCTGGATCATTAAGCTGCCACG CTCCATCCCCGGGTGGCCTTATGGATCATTAAGCTGCCACG Direct Loss 1 0.923674309703038 1 0.902411460876465 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DKKL1 ENSG00000104901 CDS Human protein_coding chr19:49878063 chr19:49878063 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_1733 0 0 0 0 1 DKKL1 chr19:49877974 3'AG 49877974 Downstream 90bp
chr19 48259803 48259803 1 + C T UCEC 48259803 + 48259783 48259823 41 AGCCCGAGGGCAACATCCTTCGAGACCGGTTCAAGAGCTTC AGCCCGAGGGCAACATCCTTTGAGACCGGTTCAAGAGCTTC Direct Loss 1 0.736412543198483 1 0.739936769008636 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259803 chr19:48259803 stopgain 0.513 0 21 hm5C_associated_SNPs_1734 0 0 1 0 2 NOP53 chr19:48259785 3'AG 48259785 Downstream 19bp
chr19 48259803 48259803 1 + C T UCEC 48259803 + 48259783 48259823 41 AGCCCGAGGGCAACATCCTTCGAGACCGGTTCAAGAGCTTC AGCCCGAGGGCAACATCCTTTGAGACCGGTTCAAGAGCTTC Direct Loss 1 0.736412543198483 1 0.739936769008636 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259803 chr19:48259803 stopgain 0.513 0 21 hm5C_associated_SNPs_1734 0 0 1 0 2 NOP53 chr19:48259861 5'GT 48259861 Upstream 59bp
chr14 65007630 65007630 1 + C T UCEC 65007630 + 65007610 65007650 41 ACCTATTCGTGCGTCGGGGTCTTCCAACATGGCAAGGTGGA ACCTATTCGTGCGTCGGGGTTTTCCAACATGGCAAGGTGGA Direct Loss 1 0.147903672026142 1 0.0625908672809601 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSPA2 ENSG00000126803 CDS Human protein_coding chr14:65007630 chr14:65007630 synonymous SNV . 0 21 hm5C_associated_SNPs_1735 0 0 0 0 1 HSPA2 chr14:65007563 3'AG 65007563 Downstream 68bp
chr7 130021483 130021483 1 + C T UCEC 130021483 + 130021463 130021503 41 CTCCCCAGCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGC CTCCCCAGCTGGACTTCTGGTGGGGGCCTGCCCACCCTGGC Direct Loss 1 0.955203062584364 1 0.933058142662048 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021483 chr7:130021483 nonsynonymous SNV 0.896 3 21 hm5C_associated_SNPs_1737 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 13bp
chr7 130021483 130021483 1 + C T UCEC 130021483 + 130021463 130021503 41 CTCCCCAGCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGC CTCCCCAGCTGGACTTCTGGTGGGGGCCTGCCCACCCTGGC Direct Loss 1 0.955203062584364 1 0.933058142662048 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021483 chr7:130021483 nonsynonymous SNV 0.896 3 21 hm5C_associated_SNPs_1737 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 39bp
chr20 2635125 2635125 1 + C A UCEC 2635125 + 2635105 2635145 41 CGTCCAAAAAGAAGAAAGTACTCTTGGGAGTTGGGGATCCC CGTCCAAAAAGAAGAAAGTAATCTTGGGAGTTGGGGATCCC Direct Loss 1 0.304137954324122 1 0.240497350692749 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635125 chr20:2635125 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_1738 0 0 1 1 2 NOP56 chr20:2635060 3'AG 2635060 Downstream 66bp
chr20 2635125 2635125 1 + C A UCEC 2635125 + 2635105 2635145 41 CGTCCAAAAAGAAGAAAGTACTCTTGGGAGTTGGGGATCCC CGTCCAAAAAGAAGAAAGTAATCTTGGGAGTTGGGGATCCC Direct Loss 1 0.304137954324122 1 0.240497350692749 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635125 chr20:2635125 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_1738 0 0 1 1 2 NOP56 chr20:2635221 5'GT 2635221 Upstream 97bp
chr12 95897859 95897859 1 + C T UCEC 95897859 + 95897839 95897879 41 AGTGTGCTGGAATTGATGTTCGTCTGTGTGATGTTGGTGAG AGTGTGCTGGAATTGATGTTTGTCTGTGTGATGTTGGTGAG Direct Loss 1 0.479726148202811 1 0.405022114515305 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95897859 chr12:95897859 nonsynonymous SNV 0.992 4 21 hm5C_associated_SNPs_1739 0 0 1 2 1 METAP2 chr12:95897937 5'GT 95897937 Upstream 79bp
chr19 39870630 39870630 1 + C T UCEC 39870630 + 39870610 39870650 41 TCACGGAGACGCAGAAGAAACGGCTGCTATCCTGGAAACAG TCACGGAGACGCAGAAGAAATGGCTGCTATCCTGGAAACAG Direct Loss 1 0.648282537963325 1 0.300581753253937 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39870630 chr19:39870630 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1740 0 0 1 0 1 SAMD4B chr19:39870606 3'AG 39870606 Downstream 25bp
chrX 69370124 69370124 1 + C T UCEC 69370124 + 69370104 69370144 41 GTGACTGGTATGAGCAACATCGGAAATATGGAGCATTACCG GTGACTGGTATGAGCAACATTGGAAATATGGAGCATTACCG Direct Loss 1 0.795746835731228 1 0.611006498336792 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69370124 chrX:69370124 nonsynonymous SNV 0.994 0 21 hm5C_associated_SNPs_1742 0 0 1 0 1 IGBP1 chrX:69370172 5'GT 69370172 Upstream 49bp
chr12 21207493 21207493 1 + C T UCEC 21207493 + 21207473 21207513 41 GCTTGTACAAGGAAATCTTACGTTTATTTTGTAATTCAAGT GCTTGTACAAGGAAATCTTATGTTTATTTTGTAATTCAAGT Direct Loss 1 0.0929485479956858 1 0.0770759284496307 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21207493 chr12:21207493 synonymous SNV . 0 21 hm5C_associated_SNPs_1743 0 0 0 0 1 SLCO1B7 chr12:21207570 5'GT 21207570 Upstream 78bp
chr17 77755539 77755539 1 + C T UCEC 77755539 + 77755519 77755559 41 CCGGAAGAGAGGCAAGAGGCCGAGAGGCCGGCCAAGGAAGC CCGGAAGAGAGGCAAGAGGCTGAGAGGCCGGCCAAGGAAGC Direct Loss 1 0.840094638683189 1 0.678892612457275 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755539 chr17:77755539 nonsynonymous SNV 0.852 4 21 hm5C_associated_SNPs_1745 0 0 1 0 2 CBX2 chr17:77755495 3'AG 77755495 Downstream 45bp
chr17 77755539 77755539 1 + C T UCEC 77755539 + 77755519 77755559 41 CCGGAAGAGAGGCAAGAGGCCGAGAGGCCGGCCAAGGAAGC CCGGAAGAGAGGCAAGAGGCTGAGAGGCCGGCCAAGGAAGC Direct Loss 1 0.840094638683189 1 0.678892612457275 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755539 chr17:77755539 nonsynonymous SNV 0.852 4 21 hm5C_associated_SNPs_1745 0 0 1 0 2 CBX2 chr17:77755600 5'GT 77755600 Upstream 62bp
chr11 25004826 25004826 1 + C T UCEC 25004826 + 25004806 25004846 41 CTCTAAGCTTCCAGATGCAGCGGCCAAAAGCAAGGTACCTA CTCTAAGCTTCCAGATGCAGTGGCCAAAAGCAAGGTACCTA Direct Loss 1 0.308528011293752 1 0.466072678565979 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LUZP2 ENSG00000187398 CDS Human protein_coding chr11:25004826 chr11:25004826 nonsynonymous SNV 0.005 0 21 hm5C_associated_SNPs_1746 0 0 0 0 1 LUZP2 chr11:25004839 5'GT 25004839 Upstream 14bp
chr5 72185767 72185767 1 + C T UCEC 72185767 + 72185747 72185787 41 CATTAGCAGATTCAGTAGGACATCATTTAAACAAACCAGTA CATTAGCAGATTCAGTAGGATATCATTTAAACAAACCAGTA Direct Loss 1 0.327587881980672 1 0.108445197343826 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72185767 chr5:72185767 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_1747 0 0 1 0 1 TNPO1 chr5:72185784 5'GT 72185784 Upstream 18bp
chr3 141006161 141006161 1 + C T UCEC 141006161 + 141006141 141006181 41 CTATCATCTCTCTAGGAAACCGTATCACCCAAAACTGGAAG CTATCATCTCTCTAGGAAACTGTATCACCCAAAACTGGAAG Direct Loss 1 0.1142812221127 1 0.0680171549320221 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PXYLP1 ENSG00000155893 CDS Human protein_coding chr3:141006161 chr3:141006161 nonsynonymous SNV 0.928 3 21 hm5C_associated_SNPs_1748 0 0 0 0 1 PXYLP1 chr3:141006156 3'AG 141006156 Downstream 6bp
chr16 57486774 57486774 1 + C T UCEC 57486774 + 57486754 57486794 41 GTGAGGAGCAGTTGCAGCACCGCATCCTGACGGCAGCCCTT GTGAGGAGCAGTTGCAGCACTGCATCCTGACGGCAGCCCTT Direct Loss 1 0.618069909968197 1 0.873891472816467 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57486774 chr16:57486774 nonsynonymous SNV 0.989 4 21 hm5C_associated_SNPs_1749 0 0 1 0 2 COQ9 chr16:57486713 3'AG 57486713 Downstream 62bp
chr16 57486774 57486774 1 + C T UCEC 57486774 + 57486754 57486794 41 GTGAGGAGCAGTTGCAGCACCGCATCCTGACGGCAGCCCTT GTGAGGAGCAGTTGCAGCACTGCATCCTGACGGCAGCCCTT Direct Loss 1 0.618069909968197 1 0.873891472816467 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57486774 chr16:57486774 nonsynonymous SNV 0.989 4 21 hm5C_associated_SNPs_1749 0 0 1 0 2 COQ9 chr16:57486848 5'GT 57486848 Upstream 75bp
chr19 5908886 5908886 1 + C T UCEC 5908886 + 5908866 5908906 41 ACCTCAGAAGCCACTGTCCACAGCCTGCAGGCCACCGTGCA ACCTCAGAAGCCACTGTCCATAGCCTGCAGGCCACCGTGCA Direct Loss 1 0.457242967839398 1 0.230082392692566 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VMAC ENSG00000187650 CDS Human protein_coding chr19:5908886 chr19:5908886 synonymous SNV . 0 21 hm5C_associated_SNPs_1752 0 0 0 0 1 VMAC chr19:5908835 3'AG 5908835 Downstream 52bp
chr7 30640781 30640781 1 + C T UCEC 30640781 + 30640761 30640801 41 GAGGAACAGATCCTGGAGATCGATTGCACCATGCTCACCCC GAGGAACAGATCCTGGAGATTGATTGCACCATGCTCACCCC Direct Loss 1 0.50062968928682 1 0.347984433174133 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GARS ENSG00000106105 CDS Human protein_coding chr7:30640781 chr7:30640781 synonymous SNV . 0 21 hm5C_associated_SNPs_1753 0 0 1 0 1 GARS chr7:30640816 5'GT 30640816 Upstream 36bp
chr17 65735673 65735673 1 + C T UCEC 65735673 + 65735653 65735693 41 TTCCTGTACCTGAAGTGTAGCGAAAATGCTACTATGACTCT TTCCTGTACCTGAAGTGTAGTGAAAATGCTACTATGACTCT Direct Loss 1 0.650087292813442 1 0.578565835952759 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65735673 chr17:65735673 synonymous SNV . 0 21 hm5C_associated_SNPs_1754 0 0 1 0 2 NOL11 chr17:65735632 3'AG 65735632 Downstream 42bp
chr17 65735673 65735673 1 + C T UCEC 65735673 + 65735653 65735693 41 TTCCTGTACCTGAAGTGTAGCGAAAATGCTACTATGACTCT TTCCTGTACCTGAAGTGTAGTGAAAATGCTACTATGACTCT Direct Loss 1 0.650087292813442 1 0.578565835952759 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65735673 chr17:65735673 synonymous SNV . 0 21 hm5C_associated_SNPs_1754 0 0 1 0 2 NOL11 chr17:65735724 5'GT 65735724 Upstream 52bp
chr2 203157511 203157511 1 + C T UCEC 203157511 + 203157491 203157531 41 TTATACTAGGTGATTGAAATCTCTGAATATCGAACCCAGCT TTATACTAGGTGATTGAAATTTCTGAATATCGAACCCAGCT Direct Loss 1 0.495804438858356 1 0.247507780790329 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOP58 ENSG00000055044 CDS Human protein_coding chr2:203157511 chr2:203157511 synonymous SNV . 0 21 hm5C_associated_SNPs_1755 0 0 1 0 1 NOP58 chr2:203157500 3'AG 203157500 Downstream 12bp
chr19 45803093 45803093 1 + C T UCEC 45803093 + 45803073 45803113 41 GCAGACGAACCTGAGAGAATCGGGGGACCTGAGGTCACAAG GCAGACGAACCTGAGAGAATTGGGGGACCTGAGGTCACAAG Direct Loss 1 0.901834356000308 1 0.89779257774353 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45803093 chr19:45803093 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1758 0 0 1 0 1 MARK4 chr19:45803113 5'GT 45803113 Upstream 21bp
chr9 131455929 131455929 1 + C T UCEC 131455929 + 131455909 131455949 41 TCATTTAGGATTTGACGAAACGTTCGAGTCAAACGCAGAAT TCATTTAGGATTTGACGAAATGTTCGAGTCAAACGCAGAAT Direct Loss 1 0.119343750419303 1 0.112226098775864 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SET ENSG00000119335 CDS Human protein_coding chr9:131455929 chr9:131455929 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_1761 0 0 1 0 1 SET chr9:131455917 3'AG 131455917 Downstream 13bp
chr15 63111780 63111780 1 + C T UCEC 63111780 + 63111760 63111800 41 TTCTCCAAGCGAGTCGCCGGCGCTGTGACAGAGCTCATCCA TTCTCCAAGCGAGTCGCCGGTGCTGTGACAGAGCTCATCCA Direct Loss 1 0.151389183308087 1 0.19050869345665 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63111780 chr15:63111780 synonymous SNV . 0 21 hm5C_associated_SNPs_1763 0 0 0 0 2 TLN2 chr15:63111715 3'AG 63111715 Downstream 66bp
chr15 63111780 63111780 1 + C T UCEC 63111780 + 63111760 63111800 41 TTCTCCAAGCGAGTCGCCGGCGCTGTGACAGAGCTCATCCA TTCTCCAAGCGAGTCGCCGGTGCTGTGACAGAGCTCATCCA Direct Loss 1 0.151389183308087 1 0.19050869345665 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63111780 chr15:63111780 synonymous SNV . 0 21 hm5C_associated_SNPs_1763 0 0 0 0 2 TLN2 chr15:63111820 5'GT 63111820 Upstream 41bp
chr16 83251057 83251057 1 + C A UCEC 83251057 + 83251037 83251077 41 AATGAGAACACAGGGAGCGTCTCCGTGACACGGACCTTGGA AATGAGAACACAGGGAGCGTATCCGTGACACGGACCTTGGA Direct Loss 1 0.445618420790823 1 0.905078291893005 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:83251057 chr16:83251057 synonymous SNV . 0 21 hm5C_associated_SNPs_1764 0 0 0 0 1 CDH13 chr16:83251102 5'GT 83251102 Upstream 46bp
chr7 131128390 131128390 1 + C T UCEC 131128390 + 131128370 131128410 41 GTCAAACCTGGAAACTTCTTCGAGAGGACTCCTGTAATGCT GTCAAACCTGGAAACTTCTTTGAGAGGACTCCTGTAATGCT Direct Loss 1 0.735755792202615 1 0.754134893417358 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MKLN1 ENSG00000128585 CDS Human protein_coding chr7:131128390 chr7:131128390 stopgain 1.000 1 21 hm5C_associated_SNPs_1765 0 0 1 0 1 MKLN1 chr7:131128461 5'GT 131128461 Upstream 72bp
chr19 13010519 13010519 1 + C T UCEC 13010519 + 13010499 13010539 41 ATTTCCCTTCTGAAGTCGTTCAGATGTGTTCCTTAAAAAGA ATTTCCCTTCTGAAGTCGTTTAGATGTGTTCCTTAAAAAGA Direct Loss 1 0.379911353690275 1 0.285151720046997 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13010519 chr19:13010519 stopgain . 0 21 hm5C_associated_SNPs_1766 0 0 1 1 1 GCDH chr19:13010514 3'AG 13010514 Downstream 6bp
chr2 169622178 169622178 1 + C A UCEC 169622178 + 169622158 169622198 41 GGTGGGTTTTTAACCTACTGCTATTGCTAGTACAAGGGTTG GGTGGGTTTTTAACCTACTGATATTGCTAGTACAAGGGTTG Direct Loss 1 0.0987909723627359 1 0.0728640854358673 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169622178 chr2:169622178 nonsynonymous SNV 0.677 5 21 hm5C_associated_SNPs_1767 0 0 0 0 1 CERS6 chr2:169622258 5'GT 169622258 Upstream 81bp
chr16 14041557 14041557 1 + C T UCEC 14041557 + 14041537 14041577 41 TTCCATCTCTGATCCATCGTCGGGGCATTGACATTGAACCC TTCCATCTCTGATCCATCGTTGGGGCATTGACATTGAACCC Direct Loss 1 0.758660563659663 1 0.868948101997375 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ERCC4 ENSG00000175595 CDS Human protein_coding chr16:14041557 chr16:14041557 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1771 0 0 1 0 1 ERCC4 chr16:14041471 3'AG 14041471 Downstream 87bp
chr5 131973793 131973793 1 + C T UCEC 131973793 + 131973773 131973813 41 ATATTGAATACATAGAAATACGGTCTGATGCCGATGAAAAT ATATTGAATACATAGAAATATGGTCTGATGCCGATGAAAAT Direct Loss 1 0.0896428035054237 1 0.0634273290634155 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131973793 chr5:131973793 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_1772 1 0 1 0 1 RAD50 chr5:131973773 3'AG 131973773 Downstream 21bp
chr17 57733217 57733217 1 + C T UCEC 57733217 + 57733197 57733237 41 TTGATTTTCTTTCTGTAGATCAGTGAAAAGCATGATGTGGT TTGATTTTCTTTCTGTAGATTAGTGAAAAGCATGATGTGGT Direct Loss 1 0.0790438580410812 1 0.332433342933655 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57733217 chr17:57733217 synonymous SNV . 0 21 hm5C_associated_SNPs_1773 0 0 1 0 1 CLTC chr17:57733215 3'AG 57733215 Downstream 3bp
chr7 142459721 142459721 1 + C T UCEC 142459721 + 142459701 142459741 41 ATCATCCGCCACCCCCAATACGACAGGAAGACTCTGAACAA ATCATCCGCCACCCCCAATATGACAGGAAGACTCTGAACAA Direct Loss 1 0.855722977932919 1 0.426177740097046 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459721 chr7:142459721 synonymous SNV . 0 21 hm5C_associated_SNPs_1774 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 97bp
chr20 9376240 9376240 1 + C T UCEC 9376240 + 9376220 9376260 41 CCAGCAAACATCTTAGAGGACGATAATGAAGAGGAGATCGA CCAGCAAACATCTTAGAGGATGATAATGAAGAGGAGATCGA Direct Loss 1 0.273005652947525 1 0.110212683677673 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB4 ENSG00000101333 CDS Human protein_coding chr20:9376240 chr20:9376240 synonymous SNV . 0 21 hm5C_associated_SNPs_1775 1 0 0 0 2 PLCB4 chr20:9376170 3'AG 9376170 Downstream 71bp
chr20 9376240 9376240 1 + C T UCEC 9376240 + 9376220 9376260 41 CCAGCAAACATCTTAGAGGACGATAATGAAGAGGAGATCGA CCAGCAAACATCTTAGAGGATGATAATGAAGAGGAGATCGA Direct Loss 1 0.273005652947525 1 0.110212683677673 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB4 ENSG00000101333 CDS Human protein_coding chr20:9376240 chr20:9376240 synonymous SNV . 0 21 hm5C_associated_SNPs_1775 1 0 0 0 2 PLCB4 chr20:9376265 5'GT 9376265 Upstream 26bp
chr6 43189429 43189429 1 + C A UCEC 43189429 + 43189409 43189449 41 AGCTTCCTCCATAGCATGACCTGTGCCAAATGTAACCATGG AGCTTCCTCCATAGCATGACATGTGCCAAATGTAACCATGG Direct Loss 1 0.15362037148629 1 0.0661382079124451 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43189429 chr6:43189429 synonymous SNV . 0 21 hm5C_associated_SNPs_1777 0 0 1 0 2 CUL9 chr6:43189423 3'AG 43189423 Downstream 7bp
chr6 43189429 43189429 1 + C A UCEC 43189429 + 43189409 43189449 41 AGCTTCCTCCATAGCATGACCTGTGCCAAATGTAACCATGG AGCTTCCTCCATAGCATGACATGTGCCAAATGTAACCATGG Direct Loss 1 0.15362037148629 1 0.0661382079124451 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43189429 chr6:43189429 synonymous SNV . 0 21 hm5C_associated_SNPs_1777 0 0 1 0 2 CUL9 chr6:43189516 5'GT 43189516 Upstream 88bp
chr7 142458446 142458446 1 + C A UCEC 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGTTGGGGGATACAACTGTGAGGAGAATTC Direct Loss 1 0.348252999043164 1 0.322016775608063 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458446 synonymous SNV . 0 21 hm5C_associated_SNPs_1780 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 41bp
chr6 34823411 34823411 1 + C T UCEC 34823411 + 34823391 34823431 41 TAGGTGTCTCTGCCAACAGACTCATGGGTGGTGCCATGCAG TAGGTGTCTCTGCCAACAGATTCATGGGTGGTGCCATGCAG Direct Loss 1 0.191815592259712 1 0.339758992195129 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UHRF1BP1 ENSG00000065060 CDS Human protein_coding chr6:34823411 chr6:34823411 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_1782 0 0 1 0 1 UHRF1BP1 chr6:34823394 3'AG 34823394 Downstream 18bp
chr19 18254659 18254659 1 + C T UCEC 18254659 + 18254639 18254679 41 CAGCCCATCTCTCCTGAATACCATCAGCCTGGACACAATGC CAGCCCATCTCTCCTGAATATCATCAGCCTGGACACAATGC Direct Loss 1 0.0149116801000627 1 0.0372342765331268 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18254659 chr19:18254659 nonsynonymous SNV 0.034 0 21 hm5C_associated_SNPs_1783 0 0 1 0 1 MAST3 chr19:18254573 3'AG 18254573 Downstream 87bp
chrX 153696537 153696537 1 + C T UCEC 153696537 + 153696517 153696557 41 CGCGTGCTCTTCCCGGGCATCGAGGCCCACCCGGTGCTCAA CGCGTGCTCTTCCCGGGCATTGAGGCCCACCCGGTGCTCAA Direct Loss 1 0.653194918341786 1 0.841401696205139 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696537 chrX:153696537 synonymous SNV . 0 21 hm5C_associated_SNPs_1784 0 0 1 0 1 PLXNA3 chrX:153696567 5'GT 153696567 Upstream 31bp
chr9 136224615 136224615 1 + C T UCEC 136224615 + 136224595 136224635 41 TGTTCTGCAAACTCACCCTGCGGCACATCAACAAGTGCCCA TGTTCTGCAAACTCACCCTGTGGCACATCAACAAGTGCCCA Direct Loss 1 0.633057583399615 1 0.209915906190872 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control SURF2 ENSG00000148291 CDS Human protein_coding chr9:136224615 chr9:136224615 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_1786 0 0 1 0 2 SURF2 chr9:136224587 3'AG 136224587 Downstream 29bp
chr9 136224615 136224615 1 + C T UCEC 136224615 + 136224595 136224635 41 TGTTCTGCAAACTCACCCTGCGGCACATCAACAAGTGCCCA TGTTCTGCAAACTCACCCTGTGGCACATCAACAAGTGCCCA Direct Loss 1 0.633057583399615 1 0.209915906190872 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control SURF2 ENSG00000148291 CDS Human protein_coding chr9:136224615 chr9:136224615 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_1786 0 0 1 0 2 SURF2 chr9:136224690 5'GT 136224690 Upstream 76bp
chrX 16753431 16753431 1 + C T UCEC 16753431 + 16753411 16753451 41 AGCACAAACAATAAAGAAATCCGTAGAAGAAGGAAAAATAG AGCACAAACAATAAAGAAATTCGTAGAAGAAGGAAAAATAG Direct Loss 1 0.406960386211101 1 0.139512836933136 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SYAP1 ENSG00000169895 CDS Human protein_coding chrX:16753431 chrX:16753431 nonsynonymous SNV 0.868 3 21 hm5C_associated_SNPs_1787 0 0 1 0 3 SYAP1 chrX:16753350 3'AG 16753350 Downstream 82bp
chrX 16753431 16753431 1 + C T UCEC 16753431 + 16753411 16753451 41 AGCACAAACAATAAAGAAATCCGTAGAAGAAGGAAAAATAG AGCACAAACAATAAAGAAATTCGTAGAAGAAGGAAAAATAG Direct Loss 1 0.406960386211101 1 0.139512836933136 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SYAP1 ENSG00000169895 CDS Human protein_coding chrX:16753431 chrX:16753431 nonsynonymous SNV 0.868 3 21 hm5C_associated_SNPs_1787 0 0 1 0 3 SYAP1 chrX:16753388 3'AG 16753388 Downstream 44bp
chrX 16753431 16753431 1 + C T UCEC 16753431 + 16753411 16753451 41 AGCACAAACAATAAAGAAATCCGTAGAAGAAGGAAAAATAG AGCACAAACAATAAAGAAATTCGTAGAAGAAGGAAAAATAG Direct Loss 1 0.406960386211101 1 0.139512836933136 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SYAP1 ENSG00000169895 CDS Human protein_coding chrX:16753431 chrX:16753431 nonsynonymous SNV 0.868 3 21 hm5C_associated_SNPs_1787 0 0 1 0 3 SYAP1 chrX:16753468 5'GT 16753468 Upstream 38bp
chr1 214503545 214503545 1 + C T UCEC 214503545 + 214503525 214503565 41 TATTGATCTCCTGTACCCAACGGAAGATAGAAATGACCGGT TATTGATCTCCTGTACCCAATGGAAGATAGAAATGACCGGT Direct Loss 1 0.64916650530401 1 0.653282999992371 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214503545 chr1:214503545 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1788 0 0 1 0 2 SMYD2 chr1:214503511 3'AG 214503511 Downstream 35bp
chr1 214503545 214503545 1 + C T UCEC 214503545 + 214503525 214503565 41 TATTGATCTCCTGTACCCAACGGAAGATAGAAATGACCGGT TATTGATCTCCTGTACCCAATGGAAGATAGAAATGACCGGT Direct Loss 1 0.64916650530401 1 0.653282999992371 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214503545 chr1:214503545 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1788 0 0 1 0 2 SMYD2 chr1:214503621 5'GT 214503621 Upstream 77bp
chr12 112227678 112227678 1 + C T UCEC 112227678 + 112227658 112227698 41 GGGAAAACCATCCCCATTGACGGAGACTTCTTCAGCTACAC GGGAAAACCATCCCCATTGATGGAGACTTCTTCAGCTACAC Direct Loss 1 0.740329724626599 1 0.864367365837097 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112227678 chr12:112227678 synonymous SNV . 0 21 hm5C_associated_SNPs_1790 0 0 1 0 2 ALDH2 chr12:112227627 3'AG 112227627 Downstream 52bp
chr12 112227678 112227678 1 + C T UCEC 112227678 + 112227658 112227698 41 GGGAAAACCATCCCCATTGACGGAGACTTCTTCAGCTACAC GGGAAAACCATCCCCATTGATGGAGACTTCTTCAGCTACAC Direct Loss 1 0.740329724626599 1 0.864367365837097 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112227678 chr12:112227678 synonymous SNV . 0 21 hm5C_associated_SNPs_1790 0 0 1 0 2 ALDH2 chr12:112227738 5'GT 112227738 Upstream 61bp
chr8 21859735 21859735 1 + C T UCEC 21859735 + 21859715 21859755 41 ACACCCCTGAACCAGGAGAGCGACCGCTTTCTGCACATCAT ACACCCCTGAACCAGGAGAGTGACCGCTTTCTGCACATCAT Direct Loss 1 0.31631037104995 1 0.108187198638916 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21859735 chr8:21859735 synonymous SNV . 0 21 hm5C_associated_SNPs_1791 0 0 1 0 1 XPO7 chr8:21859783 5'GT 21859783 Upstream 49bp
chr3 160122141 160122141 1 + C T UCEC 160122141 + 160122121 160122161 41 GGATGATTATGAAGTCATTCCTAACAGTAATTTCTATGTAT GGATGATTATGAAGTCATTCTTAACAGTAATTTCTATGTAT Direct Loss 1 0.123068329912954 1 0.0621637105941772 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160122141 chr3:160122141 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1792 0 0 1 3 1 SMC4 chr3:160122116 3'AG 160122116 Downstream 26bp
chr3 48506023 48506023 1 + C A UCEC 48506023 + 48506003 48506043 41 TTGGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAAC TTGGTGTGCAGAGCCCCTTGACCCCAGTCACTGGCTCCAAC Direct Loss 1 0.107023410100097 1 0.0233504176139832 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506023 chr3:48506023 nonsynonymous SNV 0.133 0 21 hm5C_associated_SNPs_1794 0 0 1 0 2 ATRIP chr3:48505981 3'AG 48505981 Downstream 43bp
chr3 48506023 48506023 1 + C A UCEC 48506023 + 48506003 48506043 41 TTGGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAAC TTGGTGTGCAGAGCCCCTTGACCCCAGTCACTGGCTCCAAC Direct Loss 1 0.107023410100097 1 0.0233504176139832 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506023 chr3:48506023 nonsynonymous SNV 0.133 0 21 hm5C_associated_SNPs_1794 0 0 1 0 2 ATRIP chr3:48506061 5'GT 48506061 Upstream 39bp
chr12 53515180 53515180 1 + C T UCEC 53515180 + 53515160 53515200 41 GCTACGTGTATCAGGATGGGCTGCGGGTATGGGCCCTGCAG GCTACGTGTATCAGGATGGGTTGCGGGTATGGGCCCTGCAG Direct Loss 1 0.680947657654512 1 0.480711162090302 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53515180 chr12:53515180 synonymous SNV . 0 21 hm5C_associated_SNPs_1797 0 0 1 0 2 SOAT2 chr12:53515087 3'AG 53515087 Downstream 94bp
chr12 53515180 53515180 1 + C T UCEC 53515180 + 53515160 53515200 41 GCTACGTGTATCAGGATGGGCTGCGGGTATGGGCCCTGCAG GCTACGTGTATCAGGATGGGTTGCGGGTATGGGCCCTGCAG Direct Loss 1 0.680947657654512 1 0.480711162090302 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53515180 chr12:53515180 synonymous SNV . 0 21 hm5C_associated_SNPs_1797 0 0 1 0 2 SOAT2 chr12:53515185 5'GT 53515185 Upstream 6bp
chr7 150765105 150765105 1 + C T UCEC 150765105 + 150765085 150765125 41 ACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCGC ACGTGGCCTCCCTCTCCTTCTGCAGTCTCCTGGAGCTCCGC Direct Loss 1 0.539163807674126 1 0.517969310283661 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765105 chr7:150765105 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1798 0 0 1 0 1 SLC4A2 chr7:150765141 5'GT 150765141 Upstream 37bp
chr11 63997328 63997328 1 + C T UCEC 63997328 + 63997308 63997348 41 TTGTCTCCCCACAGAACGTGCAGAGATTGCTCGAGACGGAG TTGTCTCCCCACAGAACGTGTAGAGATTGCTCGAGACGGAG Direct Loss 1 0.359828829720975 1 0.152037352323532 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997328 chr11:63997328 stopgain 0.009 0 21 hm5C_associated_SNPs_1799 0 0 0 0 1 NUDT22 chr11:63997322 3'AG 63997322 Downstream 7bp
chr3 49742520 49742520 1 + C T UCEC 49742520 + 49742500 49742540 41 CAACCGCTTCCTCAGCACAGCGGCTGTGAGCCTCATGACCC CAACCGCTTCCTCAGCACAGTGGCTGTGAGCCTCATGACCC Direct Loss 1 0.449512675300533 1 0.24903804063797 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49742520 chr3:49742520 nonsynonymous SNV 0.789 4 21 hm5C_associated_SNPs_1800 0 0 1 0 2 RNF123 chr3:49742615 5'GT 49742615 Upstream 96bp
chr3 49742520 49742520 1 + C T UCEC 49742520 + 49742500 49742540 41 CAACCGCTTCCTCAGCACAGCGGCTGTGAGCCTCATGACCC CAACCGCTTCCTCAGCACAGTGGCTGTGAGCCTCATGACCC Direct Loss 1 0.449512675300533 1 0.24903804063797 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49742520 chr3:49742520 nonsynonymous SNV 0.789 4 21 hm5C_associated_SNPs_1800 0 0 1 0 2 RNF123 chr3:49742619 5'GT 49742619 Upstream 100bp
chr16 67671681 67671681 1 + C T UCEC 67671681 + 67671661 67671701 41 AGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGGAGG AGAGCCAGATGCTGAGCCCGTAGAGGGAGAGGAAGAGGAGG Direct Loss 1 0.673328077456455 1 0.63357949256897 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671681 chr16:67671681 nonsynonymous SNV 0.099 0 21 hm5C_associated_SNPs_1801 0 0 1 0 2 CTCF chr16:67671591 3'AG 67671591 Downstream 91bp
chr16 67671681 67671681 1 + C T UCEC 67671681 + 67671661 67671701 41 AGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGGAGG AGAGCCAGATGCTGAGCCCGTAGAGGGAGAGGAAGAGGAGG Direct Loss 1 0.673328077456455 1 0.63357949256897 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671681 chr16:67671681 nonsynonymous SNV 0.099 0 21 hm5C_associated_SNPs_1801 0 0 1 0 2 CTCF chr16:67671597 3'AG 67671597 Downstream 85bp
chrX 69353952 69353952 1 + C T UCEC 69353952 + 69353932 69353972 41 CTTGGACCTCCTTGAGAAGGCTGCCGAAATGTTATCGCAGC CTTGGACCTCCTTGAGAAGGTTGCCGAAATGTTATCGCAGC Direct Loss 1 0.489153971586058 1 0.245393484830856 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69353952 chrX:69353952 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_1802 0 0 1 0 1 IGBP1 chrX:69353985 5'GT 69353985 Upstream 34bp
chr7 142460370 142460370 1 + C T UCEC 142460370 + 142460350 142460390 41 TACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT TACCCTGGAAAGATTACCAGTAACATGTTCTGTGTGGGCTT Direct Loss 1 0.469067345883294 1 0.317857086658478 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460370 chr7:142460370 synonymous SNV . 0 21 hm5C_associated_SNPs_1804 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 89bp
chr7 142460370 142460370 1 + C T UCEC 142460370 + 142460350 142460390 41 TACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT TACCCTGGAAAGATTACCAGTAACATGTTCTGTGTGGGCTT Direct Loss 1 0.469067345883294 1 0.317857086658478 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460370 chr7:142460370 synonymous SNV . 0 21 hm5C_associated_SNPs_1804 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 49bp
chrX 41000586 41000586 1 + C T UCEC 41000586 + 41000566 41000606 41 TCAATGGAAAGATGAATGCACTGAATGAAGTTAATAAGGTG TCAATGGAAAGATGAATGCATTGAATGAAGTTAATAAGGTG Direct Loss 1 0.268560762815393 1 0.307134747505188 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41000586 chrX:41000586 synonymous SNV . 0 21 hm5C_associated_SNPs_1806 0 0 1 0 2 USP9X chrX:41000546 3'AG 41000546 Downstream 41bp
chrX 41000586 41000586 1 + C T UCEC 41000586 + 41000566 41000606 41 TCAATGGAAAGATGAATGCACTGAATGAAGTTAATAAGGTG TCAATGGAAAGATGAATGCATTGAATGAAGTTAATAAGGTG Direct Loss 1 0.268560762815393 1 0.307134747505188 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41000586 chrX:41000586 synonymous SNV . 0 21 hm5C_associated_SNPs_1806 0 0 1 0 2 USP9X chrX:41000684 5'GT 41000684 Upstream 99bp
chr10 94109496 94109496 1 + C T UCEC 94109496 + 94109476 94109516 41 CAGATCATGTCTCTGCTACTCGAATCTTGTGTGGAGCCCTT CAGATCATGTCTCTGCTACTTGAATCTTGTGTGGAGCCCTT Direct Loss 1 0.445971476177622 1 0.313340246677399 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH5 ENSG00000198060 CDS Human protein_coding chr10:94109496 chr10:94109496 stopgain 0.997 1 21 hm5C_associated_SNPs_1807 0 0 1 0 2 MARCH5 chr10:94109428 3'AG 94109428 Downstream 69bp
chr10 94109496 94109496 1 + C T UCEC 94109496 + 94109476 94109516 41 CAGATCATGTCTCTGCTACTCGAATCTTGTGTGGAGCCCTT CAGATCATGTCTCTGCTACTTGAATCTTGTGTGGAGCCCTT Direct Loss 1 0.445971476177622 1 0.313340246677399 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH5 ENSG00000198060 CDS Human protein_coding chr10:94109496 chr10:94109496 stopgain 0.997 1 21 hm5C_associated_SNPs_1807 0 0 1 0 2 MARCH5 chr10:94109594 5'GT 94109594 Upstream 99bp
chr1 231386713 231386713 1 + C T UCEC 231386713 + 231386693 231386733 41 TGCCTTATCCACAGAAGGAGCTCAAAAAGTGGGATGAGTTT TGCCTTATCCACAGAAGGAGTTCAAAAAGTGGGATGAGTTT Direct Loss 1 0.45087792381523 1 0.716822445392609 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231386713 chr1:231386713 nonsynonymous SNV 0.977 0 21 hm5C_associated_SNPs_1809 0 0 1 0 1 GNPAT chr1:231386707 3'AG 231386707 Downstream 7bp
chr11 66278678 66278678 1 + C A UCEC 66278678 + 66278658 66278698 41 GGCCCTTTTGTTTTCCAGCGCTGGCAGATTTACATGGGGAT GGCCCTTTTGTTTTCCAGCGATGGCAGATTTACATGGGGAT Direct Loss 1 0.167467691208112 1 0.41266542673111 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66278678 chr11:66278678 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1812 0 0 1 0 2 BBS1 chr11:66278676 3'AG 66278676 Downstream 3bp
chr11 66278678 66278678 1 + C A UCEC 66278678 + 66278658 66278698 41 GGCCCTTTTGTTTTCCAGCGCTGGCAGATTTACATGGGGAT GGCCCTTTTGTTTTCCAGCGATGGCAGATTTACATGGGGAT Direct Loss 1 0.167467691208112 1 0.41266542673111 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66278678 chr11:66278678 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1812 0 0 1 0 2 BBS1 chr11:66278710 5'GT 66278710 Upstream 33bp
chr1 151551199 151551199 1 + C T UCEC 151551199 + 151551179 151551219 41 TCTGGTCTTTATCCCCAGGGCTGCTACCCTGGAAAAGGAAG TCTGGTCTTTATCCCCAGGGTTGCTACCCTGGAAAAGGAAG Direct Loss 1 0.185178122855083 1 0.105664134025574 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TUFT1 ENSG00000143367 CDS Human protein_coding chr1:151551199 chr1:151551199 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_1814 0 0 0 0 1 TUFT1 chr1:151551197 3'AG 151551197 Downstream 3bp
chr17 7479907 7479907 1 + C T UCEC 7479907 + 7479887 7479927 41 TGTCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGT TGTCACGCCTGTATCGGGGGTACCAACGTGCGTGCTGAGGT Direct Loss 1 0.52762677343697 1 0.203270435333252 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479907 chr17:7479907 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_1815 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 66bp
chr7 151818003 151818003 1 + C T UCEC 151818003 + 151817983 151818023 41 CTCGCTCATCAGACCCGCCACGGCTCATGAAATGCCACGGG CTCGCTCATCAGACCCGCCATGGCTCATGAAATGCCACGGG Direct Loss 1 0.441771400283933 1 0.140844523906708 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151818003 chr7:151818003 nonsynonymous SNV 0.980 3 21 hm5C_associated_SNPs_1816 0 0 1 0 2 GALNT11 chr7:151817916 3'AG 151817916 Downstream 88bp
chr7 151818003 151818003 1 + C T UCEC 151818003 + 151817983 151818023 41 CTCGCTCATCAGACCCGCCACGGCTCATGAAATGCCACGGG CTCGCTCATCAGACCCGCCATGGCTCATGAAATGCCACGGG Direct Loss 1 0.441771400283933 1 0.140844523906708 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151818003 chr7:151818003 nonsynonymous SNV 0.980 3 21 hm5C_associated_SNPs_1816 0 0 1 0 2 GALNT11 chr7:151818053 5'GT 151818053 Upstream 51bp
chr12 53664581 53664581 1 + C T UCEC 53664581 + 53664561 53664601 41 ACGGACCACATGGGGATGACCGGTTAGTGCCCTGGGTCCCA ACGGACCACATGGGGATGACTGGTTAGTGCCCTGGGTCCCA Direct Loss 1 0.321030599416509 1 0.595240712165833 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53664581 chr12:53664581 synonymous SNV . 0 21 hm5C_associated_SNPs_1817 0 0 1 0 1 ESPL1 chr12:53664582 5'GT 53664582 Upstream 2bp
chr13 103298646 103298646 1 + C T UCEC 103298646 + 103298626 103298666 41 GTAGTTTCCTCATTACAGCCCAGTGAGTGCAAAAACAAAAC GTAGTTTCCTCATTACAGCCTAGTGAGTGCAAAAACAAAAC Direct Loss 1 0.110818582985185 1 0.177913188934326 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPP2 ENSG00000134900 CDS Human protein_coding chr13:103298646 chr13:103298646 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1818 0 0 1 0 2 TPP2 chr13:103298644 3'AG 103298644 Downstream 3bp
chr13 103298646 103298646 1 + C T UCEC 103298646 + 103298626 103298666 41 GTAGTTTCCTCATTACAGCCCAGTGAGTGCAAAAACAAAAC GTAGTTTCCTCATTACAGCCTAGTGAGTGCAAAAACAAAAC Direct Loss 1 0.110818582985185 1 0.177913188934326 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPP2 ENSG00000134900 CDS Human protein_coding chr13:103298646 chr13:103298646 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1818 0 0 1 0 2 TPP2 chr13:103298740 5'GT 103298740 Upstream 95bp
chr9 37424938 37424938 1 + C T UCEC 37424938 + 37424918 37424958 41 GGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAGGAT GGCCTGCTCTGCCTCCTCTCTGACCACGTGGACAAGAGGAT Direct Loss 1 0.298517725220128 1 0.374989658594131 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424938 chr9:37424938 synonymous SNV . 0 21 hm5C_associated_SNPs_1819 0 0 1 0 2 GRHPR chr9:37424842 3'AG 37424842 Downstream 97bp
chr9 37424938 37424938 1 + C T UCEC 37424938 + 37424918 37424958 41 GGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAGGAT GGCCTGCTCTGCCTCCTCTCTGACCACGTGGACAAGAGGAT Direct Loss 1 0.298517725220128 1 0.374989658594131 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424938 chr9:37424938 synonymous SNV . 0 21 hm5C_associated_SNPs_1819 0 0 1 0 2 GRHPR chr9:37424972 5'GT 37424972 Upstream 35bp
chr11 67052434 67052434 1 + C T UCEC 67052434 + 67052414 67052454 41 TCCCCAACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCCCG TCCCCAACCGCCTCGAGTGGTGGGGCGAGGGCGAGGCCCCG Direct Loss 1 0.754594897717939 1 0.876265108585358 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052434 chr11:67052434 nonsynonymous SNV 0.983 3 21 hm5C_associated_SNPs_1823 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 21bp
chr15 36989526 36989526 1 + C T UCEC 36989526 + 36989506 36989546 41 TTAACTGAAACTTCCCAGTGCCATTGGTCATGAGCATGAGG TTAACTGAAACTTCCCAGTGTCATTGGTCATGAGCATGAGG Direct Loss 1 0.0180515737584443 1 0.00844040513038635 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989526 chr15:36989526 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_1826 0 0 1 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 3bp
chr15 36989526 36989526 1 + C T UCEC 36989526 + 36989506 36989546 41 TTAACTGAAACTTCCCAGTGCCATTGGTCATGAGCATGAGG TTAACTGAAACTTCCCAGTGTCATTGGTCATGAGCATGAGG Direct Loss 1 0.0180515737584443 1 0.00844040513038635 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989526 chr15:36989526 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_1826 0 0 1 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 66bp
chr1 145325991 145325991 1 + C T UCEC 145325991 + 145325971 145326011 41 GATGAGAAAGGGCCTGAAGTCTTGCAAGACTCACTGGATAG GATGAGAAAGGGCCTGAAGTTTTGCAAGACTCACTGGATAG Direct Loss 1 0.173390653643052 1 0.177280604839325 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NBPF10 ENSG00000163386 CDS Human other chr1:145325991 chr1:145325991 synonymous SNV . 0 21 hm5C_associated_SNPs_1827 0 0 0 0 1 NBPF10 chr1:145325952 3'AG 145325952 Downstream 40bp
chr11 9530377 9530377 1 + C A UCEC 9530377 + 9530357 9530397 41 GAGGAGGAGCAGGAAGCCTTCTTTGAGCCGCCCCCAGGTGA GAGGAGGAGCAGGAAGCCTTATTTGAGCCGCCCCCAGGTGA Direct Loss 1 0.422216198204079 1 0.164700508117676 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9530377 chr11:9530377 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1830 0 0 1 0 1 ZNF143 chr11:9530393 5'GT 9530393 Upstream 17bp
chr1 120286596 120286596 1 + C T UCEC 120286596 + 120286576 120286616 41 CTGGCACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCTGG CTGGCACGTCATGGGCATCTTCTCCTTGCTGCCCAGCCTGG Direct Loss 1 0.145893506373084 1 0.113599389791489 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286596 chr1:120286596 nonsynonymous SNV 0.992 5 21 hm5C_associated_SNPs_1831 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 88bp
chr17 64785043 64785043 1 + C T UCEC 64785043 + 64785023 64785063 41 CATGCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAA CATGCCTTCTTCCGGAGGATTGACTGGGAAAAACTGGAGAA Direct Loss 1 0.306153496263412 1 0.19218173623085 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785043 chr17:64785043 synonymous SNV . 0 21 hm5C_associated_SNPs_1832 0 0 1 0 2 PRKCA chr17:64784957 3'AG 64784957 Downstream 87bp
chr17 64785043 64785043 1 + C T UCEC 64785043 + 64785023 64785063 41 CATGCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAA CATGCCTTCTTCCGGAGGATTGACTGGGAAAAACTGGAGAA Direct Loss 1 0.306153496263412 1 0.19218173623085 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785043 chr17:64785043 synonymous SNV . 0 21 hm5C_associated_SNPs_1832 0 0 1 0 2 PRKCA chr17:64785097 5'GT 64785097 Upstream 55bp
chr14 67786966 67786966 1 + C A UCEC 67786966 + 67786946 67786986 41 GATTATGACAACGAGGAGATCTTAACCTATGAGGAAATGTC GATTATGACAACGAGGAGATATTAACCTATGAGGAAATGTC Direct Loss 1 0.196672508677509 1 0.115452021360397 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MPP5 ENSG00000072415 CDS Human protein_coding chr14:67786966 chr14:67786966 synonymous SNV . 0 21 hm5C_associated_SNPs_1833 0 0 1 0 1 MPP5 chr14:67786947 3'AG 67786947 Downstream 20bp
chr4 48384660 48384660 1 + C A UCEC 48384660 + 48384640 48384680 41 CAATTCTACAAGACGGGGTACTTTTAGTGATCAGGAACTTG CAATTCTACAAGACGGGGTAATTTTAGTGATCAGGAACTTG Direct Loss 1 0.024417024423135 1 0.0172099769115448 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLAIN2 ENSG00000109171 CDS Human protein_coding chr4:48384660 chr4:48384660 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1837 0 0 1 0 1 SLAIN2 chr4:48384585 3'AG 48384585 Downstream 76bp
chr12 104336862 104336862 1 + C A UCEC 104336862 + 104336842 104336882 41 AATTTTGTAGGCTGAATCTTCTCCATTTGTTGAGCGACTTC AATTTTGTAGGCTGAATCTTATCCATTTGTTGAGCGACTTC Direct Loss 1 0.759437400362018 1 0.792777895927429 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104336862 chr12:104336862 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1838 0 0 1 0 1 HSP90B1 chr12:104336852 3'AG 104336852 Downstream 11bp
chr10 118306831 118306831 1 + C T UCEC 118306831 + 118306811 118306851 41 GAAGTTTGCTACGAAAGACTCGGCTGCTTCAGTGATGACTC GAAGTTTGCTACGAAAGACTTGGCTGCTTCAGTGATGACTC Direct Loss 1 0.700076026730273 1 0.0929182767868042 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306831 chr10:118306831 synonymous SNV . 0 21 hm5C_associated_SNPs_1842 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 26bp
chr20 44430647 44430647 1 + C T UCEC 44430647 + 44430627 44430667 41 TTTTGTGGCAGAGGAAAGGACGGCCTCCTGGACACATCCTG TTTTGTGGCAGAGGAAAGGATGGCCTCCTGGACACATCCTG Direct Loss 1 0.481029074390662 1 0.149988681077957 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44430647 chr20:44430647 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1843 0 0 1 0 2 DNTTIP1 chr20:44430638 3'AG 44430638 Downstream 10bp
chr20 44430647 44430647 1 + C T UCEC 44430647 + 44430627 44430667 41 TTTTGTGGCAGAGGAAAGGACGGCCTCCTGGACACATCCTG TTTTGTGGCAGAGGAAAGGATGGCCTCCTGGACACATCCTG Direct Loss 1 0.481029074390662 1 0.149988681077957 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44430647 chr20:44430647 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1843 0 0 1 0 2 DNTTIP1 chr20:44430696 5'GT 44430696 Upstream 50bp
chr3 49728616 49728616 1 + C T UCEC 49728616 + 49728596 49728636 41 AGGATGGCATCCAAGGGGGCCGGCATGTCTTTCTCCCGCAA AGGATGGCATCCAAGGGGGCTGGCATGTCTTTCTCCCGCAA Direct Loss 1 0.555570250678444 1 0.341594696044922 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49728616 chr3:49728616 synonymous SNV . 0 21 hm5C_associated_SNPs_1845 0 0 1 0 2 RNF123 chr3:49728563 3'AG 49728563 Downstream 54bp
chr3 49728616 49728616 1 + C T UCEC 49728616 + 49728596 49728636 41 AGGATGGCATCCAAGGGGGCCGGCATGTCTTTCTCCCGCAA AGGATGGCATCCAAGGGGGCTGGCATGTCTTTCTCCCGCAA Direct Loss 1 0.555570250678444 1 0.341594696044922 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49728616 chr3:49728616 synonymous SNV . 0 21 hm5C_associated_SNPs_1845 0 0 1 0 2 RNF123 chr3:49728680 5'GT 49728680 Upstream 65bp
chr17 61489416 61489416 1 + C T UCEC 61489416 + 61489396 61489436 41 ACGTTGACTACAGTGGAATGCGCCCTTTGGATAGGGCAGTG ACGTTGACTACAGTGGAATGTGCCCTTTGGATAGGGCAGTG Direct Loss 1 0.352343311748591 1 0.100637435913086 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TANC2 ENSG00000170921 CDS Human protein_coding chr17:61489416 chr17:61489416 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_1846 0 0 0 0 2 TANC2 chr17:61489359 3'AG 61489359 Downstream 58bp
chr17 61489416 61489416 1 + C T UCEC 61489416 + 61489396 61489436 41 ACGTTGACTACAGTGGAATGCGCCCTTTGGATAGGGCAGTG ACGTTGACTACAGTGGAATGTGCCCTTTGGATAGGGCAGTG Direct Loss 1 0.352343311748591 1 0.100637435913086 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TANC2 ENSG00000170921 CDS Human protein_coding chr17:61489416 chr17:61489416 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_1846 0 0 0 0 2 TANC2 chr17:61489491 5'GT 61489491 Upstream 76bp
chr17 37070657 37070657 1 + C T UCEC 37070657 + 37070637 37070677 41 GGAGCCAGAGCGTCGGGATTCACAGGACGGCAGCAGCTACC GGAGCCAGAGCGTCGGGATTTACAGGACGGCAGCAGCTACC Direct Loss 1 0.77790683452812 1 0.356585621833801 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LASP1 ENSG00000002834 CDS Human protein_coding chr17:37070657 chr17:37070657 nonsynonymous SNV 0.136 1 21 hm5C_associated_SNPs_1847 0 0 1 0 2 LASP1 chr17:37070578 3'AG 37070578 Downstream 80bp
chr17 37070657 37070657 1 + C T UCEC 37070657 + 37070637 37070677 41 GGAGCCAGAGCGTCGGGATTCACAGGACGGCAGCAGCTACC GGAGCCAGAGCGTCGGGATTTACAGGACGGCAGCAGCTACC Direct Loss 1 0.77790683452812 1 0.356585621833801 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LASP1 ENSG00000002834 CDS Human protein_coding chr17:37070657 chr17:37070657 nonsynonymous SNV 0.136 1 21 hm5C_associated_SNPs_1847 0 0 1 0 2 LASP1 chr17:37070728 5'GT 37070728 Upstream 72bp
chr10 80968135 80968135 1 + C T UCEC 80968135 + 80968115 80968155 41 TCCACAATGCCGCCACGGAGCTGCTGGACTGGTGCGGAGAC TCCACAATGCCGCCACGGAGTTGCTGGACTGGTGCGGAGAC Direct Loss 1 0.338382541057183 1 0.0937794148921967 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ1 ENSG00000108175 CDS Human protein_coding chr10:80968135 chr10:80968135 synonymous SNV . 0 21 hm5C_associated_SNPs_1848 0 0 1 0 2 ZMIZ1 chr10:80968093 3'AG 80968093 Downstream 43bp
chr10 80968135 80968135 1 + C T UCEC 80968135 + 80968115 80968155 41 TCCACAATGCCGCCACGGAGCTGCTGGACTGGTGCGGAGAC TCCACAATGCCGCCACGGAGTTGCTGGACTGGTGCGGAGAC Direct Loss 1 0.338382541057183 1 0.0937794148921967 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ1 ENSG00000108175 CDS Human protein_coding chr10:80968135 chr10:80968135 synonymous SNV . 0 21 hm5C_associated_SNPs_1848 0 0 1 0 2 ZMIZ1 chr10:80968206 5'GT 80968206 Upstream 72bp
chr14 23240646 23240646 1 + C A UCEC 23240646 + 23240626 23240666 41 TTCTCTTCTCCCCTCAGGTCCTTTACGACAGACCTTTACCC TTCTCTTCTCCCCTCAGGTCATTTACGACAGACCTTTACCC Direct Loss 1 0.118655392432452 1 0.152046382427216 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control OXA1L ENSG00000155463 CDS Human protein_coding chr14:23240646 chr14:23240646 nonsynonymous SNV 0.866 4 21 hm5C_associated_SNPs_1849 0 0 1 1 1 OXA1L chr14:23240643 3'AG 23240643 Downstream 4bp
chr11 244747 244747 1 + C A UCEC 244747 + 244727 244767 41 TAAAATTAAACATCGGGGACCTACAGGTTACAAAGGTGAGA TAAAATTAAACATCGGGGACATACAGGTTACAAAGGTGAGA Direct Loss 1 0.320695190060602 1 0.153419941663742 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMD13 ENSG00000185627 CDS Human protein_coding chr11:244747 chr11:244747 nonsynonymous SNV 0.970 1 21 hm5C_associated_SNPs_1851 0 0 1 0 2 PSMD13 chr11:244675 3'AG 244675 Downstream 73bp
chr11 244747 244747 1 + C A UCEC 244747 + 244727 244767 41 TAAAATTAAACATCGGGGACCTACAGGTTACAAAGGTGAGA TAAAATTAAACATCGGGGACATACAGGTTACAAAGGTGAGA Direct Loss 1 0.320695190060602 1 0.153419941663742 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMD13 ENSG00000185627 CDS Human protein_coding chr11:244747 chr11:244747 nonsynonymous SNV 0.970 1 21 hm5C_associated_SNPs_1851 0 0 1 0 2 PSMD13 chr11:244761 5'GT 244761 Upstream 15bp
chr19 39215182 39215182 1 + C T UCEC 39215182 + 39215162 39215202 41 GCCAGGCCAATGTTGTGGGGCCCTGGATCCAGACCAAGATG GCCAGGCCAATGTTGTGGGGTCCTGGATCCAGACCAAGATG Direct Loss 1 0.111466157605859 1 0.0354570150375366 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215182 chr19:39215182 nonsynonymous SNV 0.997 0 21 hm5C_associated_SNPs_1852 0 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 24bp
chr14 102478270 102478270 1 + C T UCEC 102478270 + 102478250 102478290 41 CCTGATGATGGTGGGGCCCTCGGGAAGTGGGAAGAGCATGG CCTGATGATGGTGGGGCCCTTGGGAAGTGGGAAGAGCATGG Direct Loss 1 0.732152279120549 1 0.664927840232849 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478270 chr14:102478270 nonsynonymous SNV 0.994 4 21 hm5C_associated_SNPs_1853 0 0 1 0 1 DYNC1H1 chr14:102478212 3'AG 102478212 Downstream 59bp
chr1 120286594 120286594 1 + C A UCEC 120286594 + 120286574 120286614 41 ACCTGGCACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCT ACCTGGCACGTCATGGGCATATCCTCCTTGCTGCCCAGCCT Direct Loss 1 0.496652276557494 1 0.12062531709671 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286594 chr1:120286594 synonymous SNV . 0 21 hm5C_associated_SNPs_1855 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 86bp
chr11 9462065 9462065 1 + C A UCEC 9462065 + 9462045 9462085 41 AGAATATTTGGAGATTCTGGCTAAGCAGGCTGGTGAAGATG AGAATATTTGGAGATTCTGGATAAGCAGGCTGGTGAAGATG Direct Loss 1 0.366354374766609 1 0.0517131686210632 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9462065 chr11:9462065 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_1858 0 0 1 0 1 IPO7 chr11:9462002 3'AG 9462002 Downstream 64bp
chr22 24455824 24455824 1 + C A UCEC 24455824 + 24455804 24455844 41 CTCAGCCACATTCATGGAATCTGGTAGGAATCGAGCAGTGT CTCAGCCACATTCATGGAATATGGTAGGAATCGAGCAGTGT Direct Loss 1 0.249036253612913 1 0.126309752464294 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24455824 chr22:24455824 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1859 0 0 0 0 1 CABIN1 chr22:24455826 5'GT 24455826 Upstream 3bp
chr15 50789404 50789404 1 + C T UCEC 50789404 + 50789384 50789424 41 AGAAATCTGGAAGTTACCACCTGTGCTTTTAGTGCATCTGA AGAAATCTGGAAGTTACCACTTGTGCTTTTAGTGCATCTGA Direct Loss 1 0.309107956096381 1 0.24235337972641 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control USP8 ENSG00000138592 CDS Human protein_coding chr15:50789404 chr15:50789404 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_1860 0 0 1 0 1 USP8 chr15:50789428 5'GT 50789428 Upstream 25bp
chr16 2284212 2284212 1 + C T UCEC 2284212 + 2284192 2284232 41 GCGCAGTGTGGCAAGGCCTTCCCCAAGGCCTACCTGCTCAA GCGCAGTGTGGCAAGGCCTTTCCCAAGGCCTACCTGCTCAA Direct Loss 1 0.638001238225506 1 0.390210270881653 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control E4F1 ENSG00000167967 CDS Human protein_coding chr16:2284212 chr16:2284212 synonymous SNV . 0 21 hm5C_associated_SNPs_1861 0 0 1 0 1 E4F1 chr16:2284172 3'AG 2284172 Downstream 41bp
chr1 223943292 223943292 1 + C T UCEC 223943292 + 223943272 223943312 41 TGGGGCTCATTCAGAAGCACCGACGGCGGCAGAGGAAGATG TGGGGCTCATTCAGAAGCACTGACGGCGGCAGAGGAAGATG Direct Loss 1 0.640768817144924 1 0.110904395580292 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943292 chr1:223943292 stopgain 1.000 1 21 hm5C_associated_SNPs_1864 0 0 1 0 1 CAPN2 chr1:223943351 5'GT 223943351 Upstream 60bp
chr1 32626288 32626288 1 + C T UCEC 32626288 + 32626268 32626308 41 ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA ACGTCTTGAACTGTTCCATCTTTAATCCTTTGTTAACGTGA Direct Loss 1 0.162116773125055 1 0.696534335613251 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32626288 chr1:32626288 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1865 0 0 1 0 3 KPNA6 chr1:32626216 3'AG 32626216 Downstream 73bp
chr1 32626288 32626288 1 + C T UCEC 32626288 + 32626268 32626308 41 ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA ACGTCTTGAACTGTTCCATCTTTAATCCTTTGTTAACGTGA Direct Loss 1 0.162116773125055 1 0.696534335613251 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32626288 chr1:32626288 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1865 0 0 1 0 3 KPNA6 chr1:32626220 3'AG 32626220 Downstream 69bp
chr1 32626288 32626288 1 + C T UCEC 32626288 + 32626268 32626308 41 ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA ACGTCTTGAACTGTTCCATCTTTAATCCTTTGTTAACGTGA Direct Loss 1 0.162116773125055 1 0.696534335613251 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32626288 chr1:32626288 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1865 0 0 1 0 3 KPNA6 chr1:32626304 5'GT 32626304 Upstream 17bp
chr22 42301542 42301542 1 + C T UCEC 42301542 + 42301522 42301562 41 TCCTCTCCTCCCCGGGCCAGCGGGCAGTGCTGCTGGCCGAA TCCTCTCCTCCCCGGGCCAGTGGGCAGTGCTGCTGGCCGAA Direct Loss 1 0.663797595294324 1 0.848089456558228 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42301542 chr22:42301542 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1867 0 0 1 0 1 SREBF2 chr22:42301444 3'AG 42301444 Downstream 99bp
chr19 42373186 42373186 1 + C T UCEC 42373186 + 42373166 42373206 41 GGGGGACGTCAGAGAAACGGCGTCATGCCCAGCCACTTCAG GGGGGACGTCAGAGAAACGGTGTCATGCCCAGCCACTTCAG Direct Loss 1 0.691370562251308 1 0.504568040370941 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373186 chr19:42373186 nonsynonymous SNV 0.990 1 21 hm5C_associated_SNPs_1868 0 0 1 0 2 RPS19 chr19:42373101 3'AG 42373101 Downstream 86bp
chr19 42373186 42373186 1 + C T UCEC 42373186 + 42373166 42373206 41 GGGGGACGTCAGAGAAACGGCGTCATGCCCAGCCACTTCAG GGGGGACGTCAGAGAAACGGTGTCATGCCCAGCCACTTCAG Direct Loss 1 0.691370562251308 1 0.504568040370941 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373186 chr19:42373186 nonsynonymous SNV 0.990 1 21 hm5C_associated_SNPs_1868 0 0 1 0 2 RPS19 chr19:42373284 5'GT 42373284 Upstream 99bp
chr19 13054422 13054422 1 + C T UCEC 13054422 + 13054402 13054442 41 TACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAA TACGCTGAGGAGTTTGGCAATGAGACGTGGGGCGTAACAAA Direct Loss 1 0.857191908815068 1 0.539824068546295 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054422 chr19:13054422 synonymous SNV . 0 21 hm5C_associated_SNPs_1869 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 72bp
chr19 13054422 13054422 1 + C T UCEC 13054422 + 13054402 13054442 41 TACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAA TACGCTGAGGAGTTTGGCAATGAGACGTGGGGCGTAACAAA Direct Loss 1 0.857191908815068 1 0.539824068546295 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054422 chr19:13054422 synonymous SNV . 0 21 hm5C_associated_SNPs_1869 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 22bp
chr7 4796801 4796801 1 + C T UCEC 4796801 + 4796781 4796821 41 TCCTGCTTCCGCACCCCCTTCGGGCCTCTGTCCTCAAGGTA TCCTGCTTCCGCACCCCCTTTGGGCCTCTGTCCTCAAGGTA Direct Loss 1 0.350557859811617 1 0.528709232807159 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4796801 chr7:4796801 synonymous SNV . 0 21 hm5C_associated_SNPs_1872 0 0 1 0 1 FOXK1 chr7:4796818 5'GT 4796818 Upstream 18bp
chr17 37359313 37359313 1 + C T UCEC 37359313 + 37359293 37359333 41 TGAGGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATAC TGAGGAGAATGAGGATTTTGTGCCGGCTGCTCAGAAGATAC Direct Loss 1 0.795534344937574 1 0.0734512805938721 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359313 chr17:37359313 nonsynonymous SNV 0.621 1 21 hm5C_associated_SNPs_1873 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 72bp
chr17 37359313 37359313 1 + C T UCEC 37359313 + 37359293 37359333 41 TGAGGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATAC TGAGGAGAATGAGGATTTTGTGCCGGCTGCTCAGAAGATAC Direct Loss 1 0.795534344937574 1 0.0734512805938721 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359313 chr17:37359313 nonsynonymous SNV 0.621 1 21 hm5C_associated_SNPs_1873 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 50bp
chr15 43668796 43668796 1 + C T UCEC 43668796 + 43668776 43668816 41 TCTGTTTTGCAGCCTTATCGCCAAGCACTGCTTGATTTGGA TCTGTTTTGCAGCCTTATCGTCAAGCACTGCTTGATTTGGA Direct Loss 1 0.264009475614489 1 0.492628633975983 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43668796 chr15:43668796 synonymous SNV . 0 21 hm5C_associated_SNPs_1874 0 0 1 0 1 TUBGCP4 chr15:43668823 5'GT 43668823 Upstream 28bp
chr22 29695781 29695781 1 + C T UCEC 29695781 + 29695761 29695801 41 CCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG CCCTGGGGGGCCCCCTGGACTTTTGATGGAACAGATGGGAG Direct Loss 1 0.433183720268463 1 0.375703513622284 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695781 chr22:29695781 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1876 0 0 1 0 1 EWSR1 chr22:29695841 5'GT 29695841 Upstream 61bp
chr16 31196312 31196312 1 + C T UCEC 31196312 + 31196292 31196332 41 AGTGGTGGTGGCAGTGGTGGCGGTTATGGCAATCAAGACCA AGTGGTGGTGGCAGTGGTGGTGGTTATGGCAATCAAGACCA Direct Loss 1 0.603455157147072 1 0.408516198396683 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control FUS ENSG00000089280 CDS Human protein_coding chr16:31196312 chr16:31196312 synonymous SNV . 0 21 hm5C_associated_SNPs_1877 0 0 1 0 1 FUS chr16:31196260 3'AG 31196260 Downstream 53bp
chr20 36662465 36662465 1 + C A UCEC 36662465 + 36662445 36662485 41 CCACCGCAAGCACGCGGGACCCATCGTCTCCGTGTGGCACC CCACCGCAAGCACGCGGGACACATCGTCTCCGTGTGGCACC Direct Loss 1 0.162229877993705 1 0.0288699269294739 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPRD1B ENSG00000101413 CDS Human protein_coding chr20:36662465 chr20:36662465 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_1878 0 0 1 0 1 RPRD1B chr20:36662500 5'GT 36662500 Upstream 36bp
chr19 36510139 36510139 1 + C T UCEC 36510139 + 36510119 36510159 41 ATCGTTCTTGCCCTCAGGTTCGTCCAGCTCCACGCCCACCC ATCGTTCTTGCCCTCAGGTTTGTCCAGCTCCACGCCCACCC Direct Loss 1 0.233112354691961 1 0.0994134545326233 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLIP3;LOC101927572 ENSG00000105270 CDS Human protein_coding chr19:36510139 chr19:36510139 nonsynonymous SNV 0.994 3 21 hm5C_associated_SNPs_1879 0 0 0 0 1 CLIP3;LOC101927572 chr19:36510136 3'AG 36510136 Downstream 4bp
chr14 64909115 64909115 1 + C T UCEC 64909115 + 64909095 64909135 41 TCAAGATGCACGGGGGCGGCCCCACGGTGAGTGGTGGGTTG TCAAGATGCACGGGGGCGGCTCCACGGTGAGTGGTGGGTTG Direct Loss 1 0.248495117732892 1 0.495177239179611 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64909115 chr14:64909115 nonsynonymous SNV 0.970 2 21 hm5C_associated_SNPs_1881 0 0 1 0 1 MTHFD1 chr14:64909120 5'GT 64909120 Upstream 6bp
chr1 100740467 100740467 1 + C A UCEC 100740467 + 100740447 100740487 41 ATAAATTTAACTGAGCGTGGCTGTGTGACTAAGATATATGG ATAAATTTAACTGAGCGTGGATGTGTGACTAAGATATATGG Direct Loss 1 0.235705421531036 1 0.133371025323868 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RTCA ENSG00000137996 CDS Human protein_coding chr1:100740467 chr1:100740467 synonymous SNV . 0 21 hm5C_associated_SNPs_1882 0 0 1 0 2 RTCA chr1:100740380 3'AG 100740380 Downstream 88bp
chr1 100740467 100740467 1 + C A UCEC 100740467 + 100740447 100740487 41 ATAAATTTAACTGAGCGTGGCTGTGTGACTAAGATATATGG ATAAATTTAACTGAGCGTGGATGTGTGACTAAGATATATGG Direct Loss 1 0.235705421531036 1 0.133371025323868 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RTCA ENSG00000137996 CDS Human protein_coding chr1:100740467 chr1:100740467 synonymous SNV . 0 21 hm5C_associated_SNPs_1882 0 0 1 0 2 RTCA chr1:100740521 5'GT 100740521 Upstream 55bp
chr17 73058313 73058313 1 + C T UCEC 73058313 + 73058293 73058333 41 AATAATTCTACCAATGGCATCGTCATAGAGCCGAGCGAAAA AATAATTCTACCAATGGCATTGTCATAGAGCCGAGCGAAAA Direct Loss 1 0.338328814519496 1 0.286021709442139 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KCTD2 ENSG00000180901 CDS Human protein_coding chr17:73058313 chr17:73058313 synonymous SNV . 0 21 hm5C_associated_SNPs_1883 0 0 1 0 2 KCTD2 chr17:73058215 3'AG 73058215 Downstream 99bp
chr17 73058313 73058313 1 + C T UCEC 73058313 + 73058293 73058333 41 AATAATTCTACCAATGGCATCGTCATAGAGCCGAGCGAAAA AATAATTCTACCAATGGCATTGTCATAGAGCCGAGCGAAAA Direct Loss 1 0.338328814519496 1 0.286021709442139 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KCTD2 ENSG00000180901 CDS Human protein_coding chr17:73058313 chr17:73058313 synonymous SNV . 0 21 hm5C_associated_SNPs_1883 0 0 1 0 2 KCTD2 chr17:73058340 5'GT 73058340 Upstream 28bp
chr17 37360824 37360824 1 + C T UCEC 37360824 + 37360804 37360844 41 AGACCAAGGAAGCACGCAAGCGCCGTGAAGAGCGCCTCCAG AGACCAAGGAAGCACGCAAGTGCCGTGAAGAGCGCCTCCAG Direct Loss 1 0.909390325205615 1 0.28157103061676 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360824 chr17:37360824 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1884 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 47bp
chr7 16823094 16823094 1 + C T UCEC 16823094 + 16823074 16823114 41 GAACCAGAAAGACCCCCGCGCGAATCCTAGTGCATTCCTTT GAACCAGAAAGACCCCCGCGTGAATCCTAGTGCATTCCTTT Direct Loss 1 0.181942657601192 1 0.0685073137283325 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSPAN13 ENSG00000106537 CDS Human protein_coding chr7:16823094 chr7:16823094 nonsynonymous SNV 0.925 2 21 hm5C_associated_SNPs_1885 0 0 1 0 1 TSPAN13 chr7:16823042 3'AG 16823042 Downstream 53bp
chr17 40714704 40714704 1 + C T UCEC 40714704 + 40714684 40714724 41 TGGCCTCCCTAGCCCCTCGCCTGGCCTCCATCCTGACCTCG TGGCCTCCCTAGCCCCTCGCTTGGCCTCCATCCTGACCTCG Direct Loss 1 0.547633130594414 1 0.326732277870178 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COASY ENSG00000068120 CDS Human protein_coding chr17:40714704 chr17:40714704 synonymous SNV . 0 21 hm5C_associated_SNPs_1886 0 0 1 0 1 COASY chr17:40714630 3'AG 40714630 Downstream 75bp
chr7 142460307 142460307 1 + C T UCEC 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGTCTGGATGCTCCTGTGCTGAG Direct Loss 1 0.223612057178738 1 0.286190152168274 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460307 synonymous SNV . 0 21 hm5C_associated_SNPs_1888 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 26bp
chr19 18542868 18542868 1 + C T UCEC 18542868 + 18542848 18542888 41 CCTCCTCGTGGCATGGCCAGCGTGGGGCCCCAGGTAAGAGT CCTCCTCGTGGCATGGCCAGTGTGGGGCCCCAGGTAAGAGT Direct Loss 1 0.493880485633419 1 0.5982306599617 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18542868 chr19:18542868 synonymous SNV . 0 21 hm5C_associated_SNPs_1889 0 0 1 0 1 SSBP4 chr19:18542810 3'AG 18542810 Downstream 59bp
chr1 22332195 22332195 1 + C T UCEC 22332195 + 22332175 22332215 41 TGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCC TGGTGTTGGGTGAGTACAACTTTGCTGTGAAGGAGGGCCCC Direct Loss 1 0.552848993843072 1 0.137107849121094 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332195 chr1:22332195 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_1890 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 41bp
chr1 22332195 22332195 1 + C T UCEC 22332195 + 22332175 22332215 41 TGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCC TGGTGTTGGGTGAGTACAACTTTGCTGTGAAGGAGGGCCCC Direct Loss 1 0.552848993843072 1 0.137107849121094 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332195 chr1:22332195 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_1890 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 95bp
chr1 40878720 40878720 1 + C T UCEC 40878720 + 40878700 40878740 41 GACAAGTGGAAAAGAGGGAGCGAACCAGTTCCAGAAAAAAA GACAAGTGGAAAAGAGGGAGTGAACCAGTTCCAGAAAAAAA Direct Loss 1 0.0703974052541144 1 0.24005338549614 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMAP2 ENSG00000084070 CDS Human protein_coding chr1:40878720 chr1:40878720 synonymous SNV . 0 21 hm5C_associated_SNPs_1891 0 0 1 0 2 SMAP2 chr1:40878688 3'AG 40878688 Downstream 33bp
chr1 40878720 40878720 1 + C T UCEC 40878720 + 40878700 40878740 41 GACAAGTGGAAAAGAGGGAGCGAACCAGTTCCAGAAAAAAA GACAAGTGGAAAAGAGGGAGTGAACCAGTTCCAGAAAAAAA Direct Loss 1 0.0703974052541144 1 0.24005338549614 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMAP2 ENSG00000084070 CDS Human protein_coding chr1:40878720 chr1:40878720 synonymous SNV . 0 21 hm5C_associated_SNPs_1891 0 0 1 0 2 SMAP2 chr1:40878774 5'GT 40878774 Upstream 55bp
chr2 32824931 32824931 1 + C T UCEC 32824931 + 32824911 32824951 41 GAGACAACTGGTGGTCATAGCGTGCGATTCAATCCAAACCT GAGACAACTGGTGGTCATAGTGTGCGATTCAATCCAAACCT Direct Loss 1 0.117186892755476 1 0.475488007068634 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32824931 chr2:32824931 synonymous SNV . 0 21 hm5C_associated_SNPs_1892 0 0 1 0 1 BIRC6 chr2:32824967 5'GT 32824967 Upstream 37bp
chr6 142758630 142758630 1 + C T UCEC 142758630 + 142758610 142758650 41 ATGTTCAGAAACAGTGGCGGCAGCATCTCTGCTGTGGTAGA ATGTTCAGAAACAGTGGCGGTAGCATCTCTGCTGTGGTAGA Direct Loss 1 0.423878816846914 1 0.175031304359436 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRG6 ENSG00000112414 CDS Human protein_coding chr6:142758630 chr6:142758630 stopgain 0.991 1 21 hm5C_associated_SNPs_1893 0 0 1 0 2 ADGRG6 chr6:142758571 3'AG 142758571 Downstream 60bp
chr6 142758630 142758630 1 + C T UCEC 142758630 + 142758610 142758650 41 ATGTTCAGAAACAGTGGCGGCAGCATCTCTGCTGTGGTAGA ATGTTCAGAAACAGTGGCGGTAGCATCTCTGCTGTGGTAGA Direct Loss 1 0.423878816846914 1 0.175031304359436 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRG6 ENSG00000112414 CDS Human protein_coding chr6:142758630 chr6:142758630 stopgain 0.991 1 21 hm5C_associated_SNPs_1893 0 0 1 0 2 ADGRG6 chr6:142758672 5'GT 142758672 Upstream 43bp
chr1 168154103 168154103 1 + C T UCEC 168154103 + 168154083 168154123 41 GGGAACCTTACTTGGAGAATCTCTTAAGTTAAAGGTAAATC GGGAACCTTACTTGGAGAATTTCTTAAGTTAAAGGTAAATC Direct Loss 1 0.253615203342293 1 0.0755758583545685 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TIPRL ENSG00000143155 CDS Human protein_coding chr1:168154103 chr1:168154103 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_1894 0 0 1 0 2 TIPRL chr1:168154017 3'AG 168154017 Downstream 87bp
chr1 168154103 168154103 1 + C T UCEC 168154103 + 168154083 168154123 41 GGGAACCTTACTTGGAGAATCTCTTAAGTTAAAGGTAAATC GGGAACCTTACTTGGAGAATTTCTTAAGTTAAAGGTAAATC Direct Loss 1 0.253615203342293 1 0.0755758583545685 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TIPRL ENSG00000143155 CDS Human protein_coding chr1:168154103 chr1:168154103 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_1894 0 0 1 0 2 TIPRL chr1:168154116 5'GT 168154116 Upstream 14bp
chr3 138341068 138341068 1 + C T UCEC 138341068 + 138341048 138341088 41 TGGATGTTCAAATTAGTGGGCAAAGAAACATTCTATGTTGG TGGATGTTCAAATTAGTGGGTAAAGAAACATTCTATGTTGG Direct Loss 1 0.140219609173568 1 0.365799367427826 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAIM ENSG00000158234 CDS Human protein_coding chr3:138341068 chr3:138341068 synonymous SNV . 0 21 hm5C_associated_SNPs_1895 0 0 1 0 1 FAIM chr3:138341030 3'AG 138341030 Downstream 39bp
chr5 65105431 65105431 1 + C T UCEC 65105431 + 65105411 65105451 41 GAAAATTGGGTGTGGGACGTCGATTCCCTCCGAAGATTGTC GAAAATTGGGTGTGGGACGTTGATTCCCTCCGAAGATTGTC Direct Loss 1 0.12830725183925 1 0.13911846280098 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLN ENSG00000123213 CDS Human protein_coding chr5:65105431 chr5:65105431 synonymous SNV . 0 21 hm5C_associated_SNPs_1896 0 0 1 0 2 NLN chr5:65105342 3'AG 65105342 Downstream 90bp
chr5 65105431 65105431 1 + C T UCEC 65105431 + 65105411 65105451 41 GAAAATTGGGTGTGGGACGTCGATTCCCTCCGAAGATTGTC GAAAATTGGGTGTGGGACGTTGATTCCCTCCGAAGATTGTC Direct Loss 1 0.12830725183925 1 0.13911846280098 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLN ENSG00000123213 CDS Human protein_coding chr5:65105431 chr5:65105431 synonymous SNV . 0 21 hm5C_associated_SNPs_1896 0 0 1 0 2 NLN chr5:65105528 5'GT 65105528 Upstream 98bp
chr10 115485145 115485145 1 + C T UCEC 115485145 + 115485125 115485165 41 TGAAGAGGACCATACAAATGCCGCCTGCTTCGCCTGCATCC TGAAGAGGACCATACAAATGTCGCCTGCTTCGCCTGCATCC Direct Loss 1 0.247486735165698 1 0.181049674749374 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115485145 chr10:115485145 nonsynonymous SNV 0.920 1 21 hm5C_associated_SNPs_1898 0 0 0 0 2 CASP7 chr10:115485121 3'AG 115485121 Downstream 25bp
chr10 115485145 115485145 1 + C T UCEC 115485145 + 115485125 115485165 41 TGAAGAGGACCATACAAATGCCGCCTGCTTCGCCTGCATCC TGAAGAGGACCATACAAATGTCGCCTGCTTCGCCTGCATCC Direct Loss 1 0.247486735165698 1 0.181049674749374 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115485145 chr10:115485145 nonsynonymous SNV 0.920 1 21 hm5C_associated_SNPs_1898 0 0 0 0 2 CASP7 chr10:115485188 5'GT 115485188 Upstream 44bp
chr10 104141008 104141008 1 + C A UCEC 104141008 + 104140988 104141028 41 ATTCCATCTGAGCTGGGGGCCTGTGGTGAGTCTCTCTAGCC ATTCCATCTGAGCTGGGGGCATGTGGTGAGTCTCTCTAGCC Direct Loss 1 0.32695330983463 1 0.221174627542496 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104141008 chr10:104141008 synonymous SNV . 0 21 hm5C_associated_SNPs_1899 0 0 1 0 1 GBF1 chr10:104141012 5'GT 104141012 Upstream 5bp
chr1 224380097 224380097 1 + C T UCEC 224380097 + 224380077 224380117 41 ACAATTCCTGGATAAAAGTACTGTATGATTTTGTGATGGAT ACAATTCCTGGATAAAAGTATTGTATGATTTTGTGATGGAT Direct Loss 1 0.34857743865689 1 0.129966378211975 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEGS1 ENSG00000143753 CDS Human protein_coding chr1:224380097 chr1:224380097 synonymous SNV . 0 21 hm5C_associated_SNPs_1900 0 0 1 0 1 DEGS1 chr1:224380034 3'AG 224380034 Downstream 64bp
chr1 203821365 203821365 1 + C T UCEC 203821365 + 203821345 203821385 41 AGCATGAAAACTCGCCGACTCAGCTCTGCCTCAACAGGAAA AGCATGAAAACTCGCCGACTTAGCTCTGCCTCAACAGGAAA Direct Loss 1 0.477449734567638 1 0.158063977956772 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203821365 chr1:203821365 synonymous SNV . 0 21 hm5C_associated_SNPs_1901 0 0 0 0 1 ZC3H11A chr1:203821269 3'AG 203821269 Downstream 97bp
chr7 130021554 130021554 1 + C A UCEC 130021554 + 130021534 130021574 41 AGCATCCAGGCGGTCAAGATCTTTCTGGAGTCCCACGGCAT AGCATCCAGGCGGTCAAGATATTTCTGGAGTCCCACGGCAT Direct Loss 1 0.15205834732981 1 0.0370011925697327 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021554 chr7:130021554 synonymous SNV . 0 21 hm5C_associated_SNPs_1902 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 84bp
chr7 130021554 130021554 1 + C A UCEC 130021554 + 130021534 130021574 41 AGCATCCAGGCGGTCAAGATCTTTCTGGAGTCCCACGGCAT AGCATCCAGGCGGTCAAGATATTTCTGGAGTCCCACGGCAT Direct Loss 1 0.15205834732981 1 0.0370011925697327 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021554 chr7:130021554 synonymous SNV . 0 21 hm5C_associated_SNPs_1902 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 19bp
chr7 142460379 142460379 1 + C A UCEC 142460379 + 142460359 142460399 41 AAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG AAGATTACCAGCAACATGTTATGTGTGGGCTTCCTTGAGGG Direct Loss 1 0.330076744049667 1 0.272505819797516 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460379 chr7:142460379 nonsynonymous SNV 0.036 1 21 hm5C_associated_SNPs_1903 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 98bp
chr7 142460379 142460379 1 + C A UCEC 142460379 + 142460359 142460399 41 AAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG AAGATTACCAGCAACATGTTATGTGTGGGCTTCCTTGAGGG Direct Loss 1 0.330076744049667 1 0.272505819797516 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460379 chr7:142460379 nonsynonymous SNV 0.036 1 21 hm5C_associated_SNPs_1903 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 40bp
chr18 77096680 77096680 1 + C T UCEC 77096680 + 77096660 77096700 41 CCTCGTGGTTGCAAAGAAGGCGTTGACAGAGGAGCAGTACC CCTCGTGGTTGCAAAGAAGGTGTTGACAGAGGAGCAGTACC Direct Loss 1 0.196850870586474 1 0.112528890371323 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP9B ENSG00000166377 CDS Human protein_coding chr18:77096680 chr18:77096680 nonsynonymous SNV 0.041 0 21 hm5C_associated_SNPs_1904 0 0 1 0 2 ATP9B chr18:77096628 3'AG 77096628 Downstream 53bp
chr18 77096680 77096680 1 + C T UCEC 77096680 + 77096660 77096700 41 CCTCGTGGTTGCAAAGAAGGCGTTGACAGAGGAGCAGTACC CCTCGTGGTTGCAAAGAAGGTGTTGACAGAGGAGCAGTACC Direct Loss 1 0.196850870586474 1 0.112528890371323 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP9B ENSG00000166377 CDS Human protein_coding chr18:77096680 chr18:77096680 nonsynonymous SNV 0.041 0 21 hm5C_associated_SNPs_1904 0 0 1 0 2 ATP9B chr18:77096711 5'GT 77096711 Upstream 32bp
chr3 50255191 50255191 1 + C T UCEC 50255191 + 50255171 50255211 41 AACTTCAGCCACGTGGAGATCGTGAAGGAGAAGGTGCAGCT AACTTCAGCCACGTGGAGATTGTGAAGGAGAAGGTGCAGCT Direct Loss 1 0.72295376931895 1 0.568502068519592 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50255191 chr3:50255191 . . 0 21 hm5C_associated_SNPs_1905 0 0 0 0 2 SLC38A3 chr3:50255108 3'AG 50255108 Downstream 84bp
chr3 50255191 50255191 1 + C T UCEC 50255191 + 50255171 50255211 41 AACTTCAGCCACGTGGAGATCGTGAAGGAGAAGGTGCAGCT AACTTCAGCCACGTGGAGATTGTGAAGGAGAAGGTGCAGCT Direct Loss 1 0.72295376931895 1 0.568502068519592 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50255191 chr3:50255191 . . 0 21 hm5C_associated_SNPs_1905 0 0 0 0 2 SLC38A3 chr3:50255272 5'GT 50255272 Upstream 82bp
chr2 217311766 217311766 1 + C T UCEC 217311766 + 217311746 217311786 41 CAAGAGGGTGATCCTGTTGTCGGGCACACCAGCCATGTCCC CAAGAGGGTGATCCTGTTGTTGGGCACACCAGCCATGTCCC Direct Loss 1 0.803564278643766 1 0.896258473396301 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311766 chr2:217311766 nonsynonymous SNV 0.973 5 21 hm5C_associated_SNPs_1907 0 0 0 0 1 SMARCAL1 chr2:217311741 3'AG 217311741 Downstream 26bp
chr7 98528424 98528424 1 + C A UCEC 98528424 + 98528404 98528444 41 AGACATTCCTGAAAGCACTTCTCTTTGTCATGATGGACTTA AGACATTCCTGAAAGCACTTATCTTTGTCATGATGGACTTA Direct Loss 1 0.0494839847623343 1 0.0976400077342987 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98528424 chr7:98528424 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_1908 0 0 1 0 1 TRRAP chr7:98528453 5'GT 98528453 Upstream 30bp
chr19 971942 971942 1 + C T UCEC 971942 + 971922 971962 41 CCCAACAAAGGAGGCGGCGGCGGCGGCGGCAGCAGCAGCAA CCCAACAAAGGAGGCGGCGGTGGCGGCGGCAGCAGCAGCAA Direct Loss 1 0.868625572921735 1 0.831139087677002 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARID3A ENSG00000116017 CDS Human protein_coding chr19:971942 chr19:971942 synonymous SNV . 0 21 hm5C_associated_SNPs_1911 0 0 0 0 1 ARID3A chr19:971878 3'AG 971878 Downstream 65bp
chr17 17046982 17046982 1 + C T UCEC 17046982 + 17046962 17047002 41 GTCCACGGAGCCCTCCGTGACGGTGAGCCCAGGCGCCGCGT GTCCACGGAGCCCTCCGTGATGGTGAGCCCAGGCGCCGCGT Direct Loss 1 0.548069104166396 1 0.367726922035217 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17046982 chr17:17046982 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1912 0 0 1 0 1 MPRIP chr17:17046983 5'GT 17046983 Upstream 2bp
chrX 48457774 48457774 1 + C T UCEC 48457774 + 48457754 48457794 41 ATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGTC ATCCTCGGGCCCTGGGGGCCTGTGGGCACCGTCGTTCTGTC Direct Loss 1 0.703154310648831 1 0.583287477493286 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457774 chrX:48457774 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_1913 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 77bp
chr19 19308370 19308370 1 + C T UCEC 19308370 + 19308350 19308390 41 CCAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGC CCAGACGAGCGCGGCTTCACTCCCCTCATCTGGGCCTCCGC Direct Loss 1 0.363455371708665 1 0.19359615445137 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308370 chr19:19308370 synonymous SNV . 0 21 hm5C_associated_SNPs_1915 0 0 1 0 2 RFXANK chr19:19308330 3'AG 19308330 Downstream 41bp
chr19 19308370 19308370 1 + C T UCEC 19308370 + 19308350 19308390 41 CCAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGC CCAGACGAGCGCGGCTTCACTCCCCTCATCTGGGCCTCCGC Direct Loss 1 0.363455371708665 1 0.19359615445137 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308370 chr19:19308370 synonymous SNV . 0 21 hm5C_associated_SNPs_1915 0 0 1 0 2 RFXANK chr19:19308430 5'GT 19308430 Upstream 61bp
chr17 7254700 7254700 1 + C A UCEC 7254700 + 7254680 7254720 41 TGAGCCGTCGCAGTCATGACCTCCACACGCTGTGACCCGAG TGAGCCGTCGCAGTCATGACATCCACACGCTGTGACCCGAG Direct Loss 1 0.811558389261717 1 0.956440567970276 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122264;BS-seq with improved protocol;Heart;Control ACAP1 ENSG00000072818 CDS Human protein_coding chr17:7254700 chr17:7254700 nonsynonymous SNV 0.489 0 21 hm5C_associated_SNPs_1917 0 0 0 0 1 ACAP1 chr17:7254614 3'AG 7254614 Downstream 87bp
chr17 57644036 57644036 1 + C A UCEC 57644036 + 57644016 57644056 41 AGGAACTACTCCAACTTTTCCTATTCAGAAACAAAGAAAAA AGGAACTACTCCAACTTTTCATATTCAGAAACAAAGAAAAA Direct Loss 1 0.103087010138734 1 0.0554591417312622 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX40 ENSG00000108406 CDS Human protein_coding chr17:57644036 chr17:57644036 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1918 0 0 1 0 2 DHX40 chr17:57643988 3'AG 57643988 Downstream 49bp
chr17 57644036 57644036 1 + C A UCEC 57644036 + 57644016 57644056 41 AGGAACTACTCCAACTTTTCCTATTCAGAAACAAAGAAAAA AGGAACTACTCCAACTTTTCATATTCAGAAACAAAGAAAAA Direct Loss 1 0.103087010138734 1 0.0554591417312622 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX40 ENSG00000108406 CDS Human protein_coding chr17:57644036 chr17:57644036 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1918 0 0 1 0 2 DHX40 chr17:57644070 5'GT 57644070 Upstream 35bp
chr1 15655875 15655875 1 + C A UCEC 15655875 + 15655855 15655895 41 TATCCTGTTGCAGCCATGACCTGAAGAAGGAGGTCGACCTT TATCCTGTTGCAGCCATGACATGAAGAAGGAGGTCGACCTT Direct Loss 1 0.686254324376978 1 0.790244698524475 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FHAD1 ENSG00000142621 CDS Human protein_coding chr1:15655875 chr1:15655875 nonsynonymous SNV 0.147 5 21 hm5C_associated_SNPs_1919 0 0 0 0 1 FHAD1 chr1:15655842 3'AG 15655842 Downstream 34bp
chr4 148786063 148786063 1 + C T UCEC 148786063 + 148786043 148786083 41 CTCTCGAGTATGTGTGTAAGCTGCAGGAAATCCAAGAAAGA CTCTCGAGTATGTGTGTAAGTTGCAGGAAATCCAAGAAAGA Direct Loss 1 0.808318336060508 1 0.247852057218552 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGAP10 ENSG00000071205 CDS Human protein_coding chr4:148786063 chr4:148786063 synonymous SNV . 0 21 hm5C_associated_SNPs_1920 0 0 1 0 2 ARHGAP10 chr4:148785997 3'AG 148785997 Downstream 67bp
chr4 148786063 148786063 1 + C T UCEC 148786063 + 148786043 148786083 41 CTCTCGAGTATGTGTGTAAGCTGCAGGAAATCCAAGAAAGA CTCTCGAGTATGTGTGTAAGTTGCAGGAAATCCAAGAAAGA Direct Loss 1 0.808318336060508 1 0.247852057218552 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGAP10 ENSG00000071205 CDS Human protein_coding chr4:148786063 chr4:148786063 synonymous SNV . 0 21 hm5C_associated_SNPs_1920 0 0 1 0 2 ARHGAP10 chr4:148786107 5'GT 148786107 Upstream 45bp
chr19 7923125 7923125 1 + C T UCEC 7923125 + 7923105 7923145 41 AGGAGAACTACGTCATCAAGCGGGAGCTGGCGGTGGTGCGG AGGAGAACTACGTCATCAAGTGGGAGCTGGCGGTGGTGCGG Direct Loss 1 0.935585480421616 1 0.942096352577209 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control EVI5L ENSG00000142459 CDS Human protein_coding chr19:7923125 chr19:7923125 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1921 0 0 0 0 2 EVI5L chr19:7923077 3'AG 7923077 Downstream 49bp
chr19 7923125 7923125 1 + C T UCEC 7923125 + 7923105 7923145 41 AGGAGAACTACGTCATCAAGCGGGAGCTGGCGGTGGTGCGG AGGAGAACTACGTCATCAAGTGGGAGCTGGCGGTGGTGCGG Direct Loss 1 0.935585480421616 1 0.942096352577209 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control EVI5L ENSG00000142459 CDS Human protein_coding chr19:7923125 chr19:7923125 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1921 0 0 0 0 2 EVI5L chr19:7923217 5'GT 7923217 Upstream 93bp
chr2 74315033 74315033 1 + C T UCEC 74315033 + 74315013 74315053 41 AGGCCACCACTGCCAGAACGCTGTGATCGTCATCCTCATCC AGGCCACCACTGCCAGAACGTTGTGATCGTCATCCTCATCC Direct Loss 1 0.444634262320806 1 0.0747027099132538 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74315033 chr2:74315033 nonsynonymous SNV 0.881 3 21 hm5C_associated_SNPs_1922 0 0 1 0 1 TET3 chr2:74314957 3'AG 74314957 Downstream 77bp
chr19 7923165 7923165 1 + C T UCEC 7923165 + 7923145 7923185 41 GCAGCAGTGCAGCTCGGCGGCCGAGGACCTGCAGAAGGCAC GCAGCAGTGCAGCTCGGCGGTCGAGGACCTGCAGAAGGCAC Direct Loss 1 0.411435145032041 1 0.653080940246582 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control EVI5L ENSG00000142459 CDS Human protein_coding chr19:7923165 chr19:7923165 nonsynonymous SNV 0.139 1 21 hm5C_associated_SNPs_1923 0 0 0 0 2 EVI5L chr19:7923077 3'AG 7923077 Downstream 89bp
chr19 7923165 7923165 1 + C T UCEC 7923165 + 7923145 7923185 41 GCAGCAGTGCAGCTCGGCGGCCGAGGACCTGCAGAAGGCAC GCAGCAGTGCAGCTCGGCGGTCGAGGACCTGCAGAAGGCAC Direct Loss 1 0.411435145032041 1 0.653080940246582 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control EVI5L ENSG00000142459 CDS Human protein_coding chr19:7923165 chr19:7923165 nonsynonymous SNV 0.139 1 21 hm5C_associated_SNPs_1923 0 0 0 0 2 EVI5L chr19:7923217 5'GT 7923217 Upstream 53bp
chr16 3712061 3712061 1 - G A UCEC 3712061 - 3712041 3712081 41 GGGCTGCCCGCCACTTCCTGCGCATGCAGCAGCTGGCCAAG GGGCTGCCCGCCACTTCCTGTGCATGCAGCAGCTGGCCAAG Direct Loss 1 0.544952163221277 1 0.158577531576157 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712061 chr16:3712061 nonsynonymous SNV 0.988 4 21 hm5C_associated_SNPs_1924 0 0 1 0 2 TRAP1 chr16:3711988 5'GT 3711988 Upstream 74bp
chr16 3712061 3712061 1 - G A UCEC 3712061 - 3712041 3712081 41 GGGCTGCCCGCCACTTCCTGCGCATGCAGCAGCTGGCCAAG GGGCTGCCCGCCACTTCCTGTGCATGCAGCAGCTGGCCAAG Direct Loss 1 0.544952163221277 1 0.158577531576157 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712061 chr16:3712061 nonsynonymous SNV 0.988 4 21 hm5C_associated_SNPs_1924 0 0 1 0 2 TRAP1 chr16:3712133 3'AG 3712133 Downstream 73bp
chr5 153760010 153760010 1 + C T UCEC 153760010 + 153759990 153760030 41 ATCTCTTGGCTTCTTCAGACCGCATTGCTCGGAACCGCAAG ATCTCTTGGCTTCTTCAGACTGCATTGCTCGGAACCGCAAG Direct Loss 1 0.203729487324871 1 0.186191260814667 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153760010 chr5:153760010 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_1925 0 0 1 0 1 GALNT10 chr5:153760008 3'AG 153760008 Downstream 3bp
chr11 830308 830308 1 + C T UCEC 830308 + 830288 830328 41 ACGAGGAGACGGAGCAGCTTCGGGAGCAGAGCCGGCGCCCG ACGAGGAGACGGAGCAGCTTTGGGAGCAGAGCCGGCGCCCG Direct Loss 1 0.971912811414856 1 0.96701055765152 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:830308 chr11:830308 nonsynonymous SNV 0.020 3 21 hm5C_associated_SNPs_1926 0 0 1 0 2 CRACR2B chr11:830250 3'AG 830250 Downstream 59bp
chr11 830308 830308 1 + C T UCEC 830308 + 830288 830328 41 ACGAGGAGACGGAGCAGCTTCGGGAGCAGAGCCGGCGCCCG ACGAGGAGACGGAGCAGCTTTGGGAGCAGAGCCGGCGCCCG Direct Loss 1 0.971912811414856 1 0.96701055765152 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:830308 chr11:830308 nonsynonymous SNV 0.020 3 21 hm5C_associated_SNPs_1926 0 0 1 0 2 CRACR2B chr11:830337 5'GT 830337 Upstream 30bp
chr7 79842156 79842156 1 + C A UCEC 79842156 + 79842136 79842176 41 AGAAAAAATCAAAAAGAGCCCTCTCACTATATGCTATCCAG AGAAAAAATCAAAAAGAGCCATCTCACTATATGCTATCCAG Direct Loss 1 0.139139533083058 1 0.0589029490947723 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79842156 chr7:79842156 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1928 0 0 1 0 1 GNAI1 chr7:79842185 5'GT 79842185 Upstream 30bp
chr9 107515213 107515213 1 + C T UCEC 107515213 + 107515193 107515233 41 TTGCTCATCGAACTGAAGTTCGGAAAGCCTTGGCCAAAGAT TTGCTCATCGAACTGAAGTTTGGAAAGCCTTGGCCAAAGAT Direct Loss 1 0.740704255324332 1 0.858660221099854 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NIPSNAP3A ENSG00000136783 CDS Human protein_coding chr9:107515213 chr9:107515213 nonsynonymous SNV 0.925 4 21 hm5C_associated_SNPs_1929 0 0 1 0 1 NIPSNAP3A chr9:107515187 3'AG 107515187 Downstream 27bp
chrX 47083814 47083814 1 + C A UCEC 47083814 + 47083794 47083834 41 CGAGGACTTGAAGATGGGGTCTGATGGGGAGAGTGACCAGG CGAGGACTTGAAGATGGGGTATGATGGGGAGAGTGACCAGG Direct Loss 1 0.437893388891663 1 0.0636888742446899 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CDK16 ENSG00000102225 CDS Human other chrX:47083814 chrX:47083814 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1930 0 0 1 0 1 CDK16 chrX:47083784 3'AG 47083784 Downstream 31bp
chr9 123898159 123898159 1 + C A UCEC 123898159 + 123898139 123898179 41 TGCAGCAGACCCAGGGAGATCTCAGTGCCTATGAAGCTGAG TGCAGCAGACCCAGGGAGATATCAGTGCCTATGAAGCTGAG Direct Loss 1 0.642902061417817 1 0.525525152683258 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNTRL ENSG00000119397 CDS Human protein_coding chr9:123898159 chr9:123898159 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1931 0 0 1 0 1 CNTRL chr9:123898084 3'AG 123898084 Downstream 76bp
chr5 7885875 7885875 1 + C A UCEC 7885875 + 7885855 7885895 41 GATCTGCCCTAACAGTGATTCTGAGGTACAAAGCCTACTCC GATCTGCCCTAACAGTGATTATGAGGTACAAAGCCTACTCC Direct Loss 1 0.785959233318093 1 0.399027854204178 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885875 chr5:7885875 nonsynonymous SNV 0.802 1 21 hm5C_associated_SNPs_1932 0 0 1 0 1 MTRR chr5:7885814 3'AG 7885814 Downstream 62bp
chr21 47986588 47986588 1 + C T UCEC 47986588 + 47986568 47986608 41 ATCCGAGCACACAGGAGCATCGCTGAGTGGTAAGAGCCCAG ATCCGAGCACACAGGAGCATTGCTGAGTGGTAAGAGCCCAG Direct Loss 1 0.366026119055118 1 0.309647262096405 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47986588 chr21:47986588 synonymous SNV . 0 21 hm5C_associated_SNPs_1934 0 0 1 0 1 DIP2A chr21:47986596 5'GT 47986596 Upstream 9bp
chr14 75360054 75360054 1 + C A UCEC 75360054 + 75360034 75360074 41 CCTCTTTTCATTTTCAGTGTCTGCAGTAAAACCCACTGTTG CCTCTTTTCATTTTCAGTGTATGCAGTAAAACCCACTGTTG Direct Loss 1 0.85361252141707 1 0.122203946113586 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DLST ENSG00000119689 CDS Human protein_coding chr14:75360054 chr14:75360054 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_1935 0 0 0 1 1 DLST chr14:75360127 5'GT 75360127 Upstream 74bp
chr21 47771442 47771442 1 + C T UCEC 47771442 + 47771422 47771462 41 ATTCTGCCAGGACCAGTAGACAGGAATTGAGTGGTGAGGAA ATTCTGCCAGGACCAGTAGATAGGAATTGAGTGGTGAGGAA Direct Loss 1 0.664269756924517 1 0.79806512594223 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47771442 chr21:47771442 stopgain 0.105 0 21 hm5C_associated_SNPs_1937 0 0 1 0 2 PCNT chr21:47771343 3'AG 47771343 Downstream 100bp
chr21 47771442 47771442 1 + C T UCEC 47771442 + 47771422 47771462 41 ATTCTGCCAGGACCAGTAGACAGGAATTGAGTGGTGAGGAA ATTCTGCCAGGACCAGTAGATAGGAATTGAGTGGTGAGGAA Direct Loss 1 0.664269756924517 1 0.79806512594223 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47771442 chr21:47771442 stopgain 0.105 0 21 hm5C_associated_SNPs_1937 0 0 1 0 2 PCNT chr21:47771454 5'GT 47771454 Upstream 13bp
chrX 110951614 110951614 1 + C T UCEC 110951614 + 110951594 110951634 41 TTGCCTCTTTCGGGCCATTTCGGAGCAGGTAAAAGGAAAAC TTGCCTCTTTCGGGCCATTTTGGAGCAGGTAAAAGGAAAAC Direct Loss 1 0.732581992401221 1 0.840558648109436 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG13 ENSG00000101901 CDS Human protein_coding chrX:110951614 chrX:110951614 nonsynonymous SNV 0.979 2 21 hm5C_associated_SNPs_1938 0 0 1 0 1 ALG13 chrX:110951621 5'GT 110951621 Upstream 8bp
chr10 76468126 76468126 1 + C T UCEC 76468126 + 76468106 76468146 41 AGCCTCTGACTGAATGTATCCGTGCTGGCCACTATGCAGCA AGCCTCTGACTGAATGTATCTGTGCTGGCCACTATGCAGCA Direct Loss 1 0.402857880937394 1 0.463680446147919 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ADK ENSG00000156110 CDS Human protein_coding chr10:76468126 chr10:76468126 nonsynonymous SNV 0.996 2 21 hm5C_associated_SNPs_1941 0 0 1 0 1 ADK chr10:76468079 3'AG 76468079 Downstream 48bp
chr9 108510356 108510356 1 + C A UCEC 108510356 + 108510336 108510376 41 AATGTGTTTTATTTTCAGCCCTGCCAAGGTAACCCTGCTGG AATGTGTTTTATTTTCAGCCATGCCAAGGTAACCCTGCTGG Direct Loss 1 0.25792579763272 1 0.0495942831039429 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM38B ENSG00000095209 CDS Human protein_coding chr9:108510356 chr9:108510356 nonsynonymous SNV 0.981 4 21 hm5C_associated_SNPs_1942 0 0 1 0 1 TMEM38B chr9:108510354 3'AG 108510354 Downstream 3bp
chr11 66555709 66555709 1 + C T UCEC 66555709 + 66555689 66555729 41 CAGCTATTCTCAGGATATGACAGGGGTAACACCCTTCCAGA CAGCTATTCTCAGGATATGATAGGGGTAACACCCTTCCAGA Direct Loss 1 0.863851739549901 1 0.964502096176147 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout C11orf80 ENSG00000173715 CDS Human protein_coding chr11:66555709 chr11:66555709 nonsynonymous SNV 0.005 1 21 hm5C_associated_SNPs_1943 0 0 1 0 1 C11orf80 chr11:66555631 3'AG 66555631 Downstream 79bp
chrX 16804649 16804649 1 + C T UCEC 16804649 + 16804629 16804669 41 GAGGCAGCGCGGGGAAGAGGCGGCGGCGCCGAAGAGGCGAC GAGGCAGCGCGGGGAAGAGGTGGCGGCGCCGAAGAGGCGAC Direct Loss 1 0.944722186987317 1 0.706841945648193 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TXLNG ENSG00000086712 CDS Human protein_coding chrX:16804649 chrX:16804649 synonymous SNV . 0 21 hm5C_associated_SNPs_1945 0 0 1 0 1 TXLNG chrX:16804712 5'GT 16804712 Upstream 64bp
chr1 223943237 223943237 1 + C T UCEC 223943237 + 223943217 223943257 41 CTGGAGGAGGAGGATGAGGACGAGGAGGATGGGGAGAGCGG CTGGAGGAGGAGGATGAGGATGAGGAGGATGGGGAGAGCGG Direct Loss 1 0.84522241793174 1 0.485768556594849 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943237 chr1:223943237 synonymous SNV . 0 21 hm5C_associated_SNPs_1946 0 0 1 0 1 CAPN2 chr1:223943182 3'AG 223943182 Downstream 56bp
chr19 50753062 50753062 1 + C T UCEC 50753062 + 50753042 50753082 41 CTCGACCTGCAGCCCTGCATCGACCTCATCGAGCGGCCGGT CTCGACCTGCAGCCCTGCATTGACCTCATCGAGCGGCCGGT Direct Loss 1 0.231290866512273 1 0.222391188144684 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50753062 chr19:50753062 synonymous SNV . 0 21 hm5C_associated_SNPs_1947 0 0 0 0 1 MYH14 chr19:50753080 5'GT 50753080 Upstream 19bp
chr11 64802321 64802321 1 + C T UCEC 64802321 + 64802301 64802341 41 TTGTCCTGGGGGCCGTAGGCCGGTTTGAAGCCTCAGTGATC TTGTCCTGGGGGCCGTAGGCTGGTTTGAAGCCTCAGTGATC Direct Loss 1 0.375020881211111 1 0.279670357704163 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802321 chr11:64802321 nonsynonymous SNV 0.888 4 21 hm5C_associated_SNPs_1948 0 0 1 0 1 SNX15 chr11:64802319 3'AG 64802319 Downstream 3bp
chrX 48564940 48564940 1 + C T UCEC 48564940 + 48564920 48564960 41 TCATAGACAACCTTGACGAGCGGCTGCCCCGCATCGCTTTC TCATAGACAACCTTGACGAGTGGCTGCCCCGCATCGCTTTC Direct Loss 1 0.40952265673232 1 0.144254237413406 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SUV39H1 ENSG00000101945 CDS Human protein_coding chrX:48564940 chrX:48564940 nonsynonymous SNV 0.045 4 21 hm5C_associated_SNPs_1949 0 0 1 0 1 SUV39H1 chrX:48565018 5'GT 48565018 Upstream 79bp
chr20 54970762 54970762 1 + C T UCEC 54970762 + 54970742 54970782 41 CACCCTCGGAGCAGCTCCTGCATCTCATCAAACTCGGTAGA CACCCTCGGAGCAGCTCCTGTATCTCATCAAACTCGGTAGA Direct Loss 1 0.177089017791093 1 0.256573796272278 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CSTF1 ENSG00000101138 CDS Human protein_coding chr20:54970762 chr20:54970762 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1950 0 0 1 0 1 CSTF1 chr20:54970777 5'GT 54970777 Upstream 16bp
chr11 119142558 119142558 1 + C T UCEC 119142558 + 119142538 119142578 41 TCGGATTACTAAAGCAGATGCTGCGGAATTTTGGAGAAAAG TCGGATTACTAAAGCAGATGTTGCGGAATTTTGGAGAAAAG Direct Loss 1 0.295084774232939 1 0.169171035289764 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CBL ENSG00000110395 CDS Human protein_coding chr11:119142558 chr11:119142558 nonsynonymous SNV 0.991 5 21 hm5C_associated_SNPs_1952 0 0 1 0 1 CBL chr11:119142591 5'GT 119142591 Upstream 34bp
chr6 44219833 44219833 1 + C T UCEC 44219833 + 44219813 44219853 41 ACCGAGCCCATTGACGAGTACTGTGTGCAGCAGCTCAAGGA ACCGAGCCCATTGACGAGTATTGTGTGCAGCAGCTCAAGGA Direct Loss 1 0.531727207113399 1 0.0400072336196899 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219833 chr6:44219833 synonymous SNV . 0 21 hm5C_associated_SNPs_1953 0 0 1 0 1 HSP90AB1 chr6:44219736 3'AG 44219736 Downstream 98bp
chr20 62366054 62366054 1 + C T UCEC 62366054 + 62366034 62366074 41 TGCCCTCTGTCCGTCTCTTGCAGTGGTGGGGTCAGATGCTG TGCCCTCTGTCCGTCTCTTGTAGTGGTGGGGTCAGATGCTG Direct Loss 1 0.471510163850921 1 0.300929814577103 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZGPAT ENSG00000197114 CDS Human protein_coding chr20:62366054 chr20:62366054 nonsynonymous SNV 0.746 0 21 hm5C_associated_SNPs_1954 0 0 1 0 1 ZGPAT chr20:62365997 3'AG 62365997 Downstream 58bp
chr6 32942278 32942278 1 + C T UCEC 32942278 + 32942258 32942298 41 GCAGGGTTGCTGGGGCTGGGCCCAGAAGCAGCAGCACCAGG GCAGGGTTGCTGGGGCTGGGTCCAGAAGCAGCAGCACCAGG Direct Loss 1 0.521776220699295 1 0.377625942230225 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32942278 chr6:32942278 synonymous SNV . 0 21 hm5C_associated_SNPs_1955 0 0 1 0 1 BRD2 chr6:32942239 3'AG 32942239 Downstream 40bp
chr13 103297358 103297358 1 + C T UCEC 103297358 + 103297338 103297378 41 AGAACTGGGTCCAAACACTGCGGTATCATTCAATGTTTTAG AGAACTGGGTCCAAACACTGTGGTATCATTCAATGTTTTAG Direct Loss 1 0.40161604329149 1 0.0862019956111908 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPP2 ENSG00000134900 CDS Human protein_coding chr13:103297358 chr13:103297358 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_1956 0 0 1 0 2 TPP2 chr13:103297259 3'AG 103297259 Downstream 100bp
chr13 103297358 103297358 1 + C T UCEC 103297358 + 103297338 103297378 41 AGAACTGGGTCCAAACACTGCGGTATCATTCAATGTTTTAG AGAACTGGGTCCAAACACTGTGGTATCATTCAATGTTTTAG Direct Loss 1 0.40161604329149 1 0.0862019956111908 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPP2 ENSG00000134900 CDS Human protein_coding chr13:103297358 chr13:103297358 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_1956 0 0 1 0 2 TPP2 chr13:103297359 5'GT 103297359 Upstream 2bp
chr16 57003897 57003897 1 + C A UCEC 57003897 + 57003877 57003917 41 TCCATAAGCTGCTCCTGCATCTCCAAGGGGAGCGAGAGTAA TCCATAAGCTGCTCCTGCATATCCAAGGGGAGCGAGAGTAA Direct Loss 1 0.862349506283431 1 0.816283702850342 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CETP ENSG00000087237 CDS Human protein_coding chr16:57003897 chr16:57003897 nonsynonymous SNV 0.357 2 21 hm5C_associated_SNPs_1957 0 0 0 0 1 CETP chr16:57003826 3'AG 57003826 Downstream 72bp
chr16 89620301 89620301 1 + C T UCEC 89620301 + 89620281 89620321 41 GCCCATCTCCTTCCCTGAGGCGCAGGAGGGCCTCATGGGCA GCCCATCTCCTTCCCTGAGGTGCAGGAGGGCCTCATGGGCA Direct Loss 1 0.666860257671686 1 0.520967304706573 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPG7 ENSG00000197912 CDS Human protein_coding chr16:89620301 chr16:89620301 nonsynonymous SNV 0.321 1 21 hm5C_associated_SNPs_1958 0 0 1 0 2 SPG7 chr16:89620202 3'AG 89620202 Downstream 100bp
chr16 89620301 89620301 1 + C T UCEC 89620301 + 89620281 89620321 41 GCCCATCTCCTTCCCTGAGGCGCAGGAGGGCCTCATGGGCA GCCCATCTCCTTCCCTGAGGTGCAGGAGGGCCTCATGGGCA Direct Loss 1 0.666860257671686 1 0.520967304706573 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPG7 ENSG00000197912 CDS Human protein_coding chr16:89620301 chr16:89620301 nonsynonymous SNV 0.321 1 21 hm5C_associated_SNPs_1958 0 0 1 0 2 SPG7 chr16:89620368 5'GT 89620368 Upstream 68bp
chr7 91714912 91714912 1 + C A UCEC 91714912 + 91714892 91714932 41 TATTCAGCAGGTTTCAGAACCTTGGCTAGAAGAGAGAAAAG TATTCAGCAGGTTTCAGAACATTGGCTAGAAGAGAGAAAAG Direct Loss 1 0.161268459975479 1 0.0920110642910004 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714912 chr7:91714912 nonsynonymous SNV 0.979 1 21 hm5C_associated_SNPs_1959 0 0 0 0 1 AKAP9 chr7:91715000 5'GT 91715000 Upstream 89bp
chr1 45242430 45242430 1 + C A UCEC 45242430 + 45242410 45242450 41 AGGTTGGACGTGGGGAATTTCTCCTGGGGCTCAGAGTGTGA AGGTTGGACGTGGGGAATTTATCCTGGGGCTCAGAGTGTGA Direct Loss 1 0.813433093760535 1 0.121393799781799 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS8 ENSG00000142937 CDS Human protein_coding chr1:45242430 chr1:45242430 nonsynonymous SNV 0.972 2 21 hm5C_associated_SNPs_1960 0 0 1 0 1 RPS8 chr1:45242347 3'AG 45242347 Downstream 84bp
chr6 31727628 31727628 1 + C T UCEC 31727628 + 31727608 31727648 41 CACGAGCAGCTGTCTTAACCCGAGTATTGGACCTTGCCTCC CACGAGCAGCTGTCTTAACCTGAGTATTGGACCTTGCCTCC Direct Loss 1 0.701755270593946 1 0.591938555240631 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control MSH5 ENSG00000204410;ENSG00000255152 CDS Human other chr6:31727628 chr6:31727628 stopgain 0.978 0 21 hm5C_associated_SNPs_1961 0 0 1 0 1 MSH5 chr6:31727563 3'AG 31727563 Downstream 66bp
chr12 56333039 56333039 1 + C G UCEC 56333039 + 56333019 56333059 41 TCTCTCAAGCTGAGTGGGTCCGGGCTGGGGCCACCACCGTG TCTCTCAAGCTGAGTGGGTCGGGGCTGGGGCCACCACCGTG Direct Loss 1 0.781794378552926 1 0.855966091156006 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56333039 chr12:56333039 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_1963 0 0 0 0 2 DGKA chr12:56332970 3'AG 56332970 Downstream 70bp
chr12 56333039 56333039 1 + C G UCEC 56333039 + 56333019 56333059 41 TCTCTCAAGCTGAGTGGGTCCGGGCTGGGGCCACCACCGTG TCTCTCAAGCTGAGTGGGTCGGGGCTGGGGCCACCACCGTG Direct Loss 1 0.781794378552926 1 0.855966091156006 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56333039 chr12:56333039 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_1963 0 0 0 0 2 DGKA chr12:56333089 5'GT 56333089 Upstream 51bp
chr14 53184802 53184802 1 + C G UCEC 53184802 + 53184782 53184822 41 TCTTTTGTCATTCTTAGGTACGGGAAAAACACTCTTGGCAC TCTTTTGTCATTCTTAGGTAGGGGAAAAACACTCTTGGCAC Direct Loss 1 0.870647459815494 1 0.948576092720032 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMC6 ENSG00000100519 CDS Human protein_coding chr14:53184802 chr14:53184802 nonsynonymous SNV 0.763 5 21 hm5C_associated_SNPs_1964 0 0 1 0 2 PSMC6 chr14:53184799 3'AG 53184799 Downstream 4bp
chr14 53184802 53184802 1 + C G UCEC 53184802 + 53184782 53184822 41 TCTTTTGTCATTCTTAGGTACGGGAAAAACACTCTTGGCAC TCTTTTGTCATTCTTAGGTAGGGGAAAAACACTCTTGGCAC Direct Loss 1 0.870647459815494 1 0.948576092720032 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMC6 ENSG00000100519 CDS Human protein_coding chr14:53184802 chr14:53184802 nonsynonymous SNV 0.763 5 21 hm5C_associated_SNPs_1964 0 0 1 0 2 PSMC6 chr14:53184860 5'GT 53184860 Upstream 59bp
chr8 94717170 94717170 1 + C T UCEC 94717170 + 94717150 94717190 41 CAACACTCACAGCAAGGAATCGAGAAGCTAAGCAATTAACT CAACACTCACAGCAAGGAATTGAGAAGCTAAGCAATTAACT Direct Loss 1 0.80409677787361 1 0.432888239622116 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM92A ENSG00000188343 CDS Human protein_coding chr8:94717170 chr8:94717170 stopgain 0.999 1 21 hm5C_associated_SNPs_1965 0 0 0 1 1 FAM92A chr8:94717137 3'AG 94717137 Downstream 34bp
chr4 148550753 148550753 1 + C A UCEC 148550753 + 148550733 148550773 41 ATTTTTACTATTTTTAGAATCTGTGAGCTGCTTGGTATATA ATTTTTACTATTTTTAGAATATGTGAGCTGCTTGGTATATA Direct Loss 1 0.294418469478796 1 0.0650573372840881 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM184C ENSG00000164168 CDS Human protein_coding chr4:148550753 chr4:148550753 synonymous SNV . 0 21 hm5C_associated_SNPs_1966 0 0 0 0 2 TMEM184C chr4:148550750 3'AG 148550750 Downstream 4bp
chr4 148550753 148550753 1 + C A UCEC 148550753 + 148550733 148550773 41 ATTTTTACTATTTTTAGAATCTGTGAGCTGCTTGGTATATA ATTTTTACTATTTTTAGAATATGTGAGCTGCTTGGTATATA Direct Loss 1 0.294418469478796 1 0.0650573372840881 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM184C ENSG00000164168 CDS Human protein_coding chr4:148550753 chr4:148550753 synonymous SNV . 0 21 hm5C_associated_SNPs_1966 0 0 0 0 2 TMEM184C chr4:148550843 5'GT 148550843 Upstream 91bp
chr9 134382806 134382806 1 + C T UCEC 134382806 + 134382786 134382826 41 GCGCCTGCTGCCAGCACTCGCGGGGGCCTTGTCGGTCCCCA GCGCCTGCTGCCAGCACTCGTGGGGGCCTTGTCGGTCCCCA Direct Loss 1 0.913635332141408 1 0.960180044174194 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control POMT1 ENSG00000130714 CDS Human protein_coding chr9:134382806 chr9:134382806 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_1968 0 0 1 0 2 POMT1 chr9:134382755 3'AG 134382755 Downstream 52bp
chr9 134382806 134382806 1 + C T UCEC 134382806 + 134382786 134382826 41 GCGCCTGCTGCCAGCACTCGCGGGGGCCTTGTCGGTCCCCA GCGCCTGCTGCCAGCACTCGTGGGGGCCTTGTCGGTCCCCA Direct Loss 1 0.913635332141408 1 0.960180044174194 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control POMT1 ENSG00000130714 CDS Human protein_coding chr9:134382806 chr9:134382806 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_1968 0 0 1 0 2 POMT1 chr9:134382901 5'GT 134382901 Upstream 96bp
chr5 176710791 176710791 1 + C T UCEC 176710791 + 176710771 176710811 41 TTCTTTTGGAATTCTAGGACCGAATCATTGATGCTGGTCCC TTCTTTTGGAATTCTAGGACTGAATCATTGATGCTGGTCCC Direct Loss 1 0.0822708852093169 1 0.386491060256958 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176710791 chr5:176710791 stopgain 0.996 1 21 hm5C_associated_SNPs_1969 2 0 1 0 1 NSD1 chr5:176710788 3'AG 176710788 Downstream 4bp
chr7 5338900 5338900 1 + C T UCEC 5338900 + 5338880 5338920 41 TGCACCGCTACGTGGTGGCGCGGGTGATCTGGGCCGACATG TGCACCGCTACGTGGTGGCGTGGGTGATCTGGGCCGACATG Direct Loss 1 0.567507807536654 1 0.225450605154037 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5338900 chr7:5338900 nonsynonymous SNV 0.821 2 21 hm5C_associated_SNPs_1971 0 0 0 0 1 SLC29A4 chr7:5338871 3'AG 5338871 Downstream 30bp
chr12 52314578 52314578 1 + C T UCEC 52314578 + 52314558 52314598 41 GCTCAGATGATGCGGGAGTGCTGGTACCCAAACCCCTCTGC GCTCAGATGATGCGGGAGTGTTGGTACCCAAACCCCTCTGC Direct Loss 1 0.825186592466818 1 0.440279901027679 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52314578 chr12:52314578 synonymous SNV . 0 21 hm5C_associated_SNPs_1972 0 0 0 0 1 ACVRL1 chr12:52314543 3'AG 52314543 Downstream 36bp
chr5 68425373 68425373 1 + C T UCEC 68425373 + 68425353 68425393 41 CTGGCCTAAGTACTGGATTTCATGATGTTCTGGCTATGACA CTGGCCTAAGTACTGGATTTTATGATGTTCTGGCTATGACA Direct Loss 1 0.551078019201587 1 0.332730650901794 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC30A5 ENSG00000145740 CDS Human protein_coding chr5:68425373 chr5:68425373 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1973 0 0 1 1 1 SLC30A5 chr5:68425274 3'AG 68425274 Downstream 100bp
chr10 60145389 60145389 1 + C T UCEC 60145389 + 60145369 60145409 41 TGTGCACCGGCTGTGGAAGTCGACTGCGCTCCCCCTTCAGG TGTGCACCGGCTGTGGAAGTTGACTGCGCTCCCCCTTCAGG Direct Loss 1 0.761211148199361 1 0.304894208908081 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TFAM ENSG00000108064 CDS Human protein_coding chr10:60145389 chr10:60145389 stopgain 0.008 0 21 hm5C_associated_SNPs_1974 0 0 1 0 1 TFAM chr10:60145408 5'GT 60145408 Upstream 20bp
chr11 67782828 67782828 1 + C T UCEC 67782828 + 67782808 67782848 41 CCTTCCACGCGGGGCGCACGCGGCCAGCTGAGTTCCGGGCT CCTTCCACGCGGGGCGCACGTGGCCAGCTGAGTTCCGGGCT Direct Loss 1 0.682325110462047 1 0.136619567871094 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67782828 chr11:67782828 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_1975 0 0 0 0 1 ALDH3B1 chr11:67782767 3'AG 67782767 Downstream 62bp
chr17 7402808 7402808 1 + C T UCEC 7402808 + 7402788 7402828 41 AGAGAGACGTCTTCCTGGAGCGGGTGTGTGGTCCAAATGGA AGAGAGACGTCTTCCTGGAGTGGGTGTGTGGTCCAAATGGA Direct Loss 1 0.562513168706873 1 0.634039759635925 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2A ENSG00000181222 CDS Human protein_coding chr17:7402808 chr17:7402808 nonsynonymous SNV 0.982 3 21 hm5C_associated_SNPs_1977 0 0 0 0 1 POLR2A chr17:7402810 5'GT 7402810 Upstream 3bp
chr4 183609440 183609440 1 + C T UCEC 183609440 + 183609420 183609460 41 CACCCCCGCTGTGCCGAGCACGGGACCTGCAAGGATGGCAA CACCCCCGCTGTGCCGAGCATGGGACCTGCAAGGATGGCAA Direct Loss 1 0.757016791306466 1 0.79342246055603 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TENM3 ENSG00000218336 CDS Human protein_coding chr4:183609440 chr4:183609440 synonymous SNV . 0 21 hm5C_associated_SNPs_1978 0 0 0 0 1 TENM3 chr4:183609504 5'GT 183609504 Upstream 65bp
chr1 180145092 180145092 1 + C T UCEC 180145092 + 180145072 180145112 41 GTGCTGACGTGCAGACACTGCGGGAGAGGCTCATTGACGCC GTGCTGACGTGCAGACACTGTGGGAGAGGCTCATTGACGCC Direct Loss 1 0.923551285280142 1 0.80587637424469 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control QSOX1 ENSG00000116260 CDS Human protein_coding chr1:180145092 chr1:180145092 nonsynonymous SNV 0.715 4 21 hm5C_associated_SNPs_1982 0 0 1 0 2 QSOX1 chr1:180145066 3'AG 180145066 Downstream 27bp
chr1 180145092 180145092 1 + C T UCEC 180145092 + 180145072 180145112 41 GTGCTGACGTGCAGACACTGCGGGAGAGGCTCATTGACGCC GTGCTGACGTGCAGACACTGTGGGAGAGGCTCATTGACGCC Direct Loss 1 0.923551285280142 1 0.80587637424469 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control QSOX1 ENSG00000116260 CDS Human protein_coding chr1:180145092 chr1:180145092 nonsynonymous SNV 0.715 4 21 hm5C_associated_SNPs_1982 0 0 1 0 2 QSOX1 chr1:180145168 5'GT 180145168 Upstream 77bp
chr2 118579441 118579441 1 + C T UCEC 118579441 + 118579421 118579461 41 CCATATATCATTTTTAGGAACAGGAGTCCTTATTCTCTCAC CCATATATCATTTTTAGGAATAGGAGTCCTTATTCTCTCAC Direct Loss 1 0.840630719679348 1 0.536656677722931 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579441 chr2:118579441 nonsynonymous SNV 0.973 2 21 hm5C_associated_SNPs_1983 0 0 1 0 1 DDX18 chr2:118579438 3'AG 118579438 Downstream 4bp
chr2 220505284 220505284 1 + C T UCEC 220505284 + 220505264 220505304 41 TTTGTTGCTCATCCTCATGCCGGCAAAACACCATCCTGAGC TTTGTTGCTCATCCTCATGCTGGCAAAACACCATCCTGAGC Direct Loss 1 0.678068279267169 1 0.375227361917496 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220505284 chr2:220505284 nonsynonymous SNV 0.984 5 21 hm5C_associated_SNPs_1988 0 0 0 0 1 SLC4A3 chr2:220505321 5'GT 220505321 Upstream 38bp
chr1 22332246 22332246 1 + C A UCEC 22332246 + 22332226 22332266 41 TCCCCATCAACTCTGAGGAGCTGTTTGTGCATCCACTCTGG TCCCCATCAACTCTGAGGAGATGTTTGTGCATCCACTCTGG Direct Loss 1 0.223877376217751 1 0.116847932338715 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332246 chr1:22332246 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_1990 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 92bp
chr1 22332246 22332246 1 + C A UCEC 22332246 + 22332226 22332266 41 TCCCCATCAACTCTGAGGAGCTGTTTGTGCATCCACTCTGG TCCCCATCAACTCTGAGGAGATGTTTGTGCATCCACTCTGG Direct Loss 1 0.223877376217751 1 0.116847932338715 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332246 chr1:22332246 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_1990 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 44bp
chr21 45107407 45107407 1 + C A UCEC 45107407 + 45107387 45107427 41 GTCTTTTTAGGAAGCAGAGTCTTTTGTGTAGAGGAAGAGGA GTCTTTTTAGGAAGCAGAGTATTTTGTGTAGAGGAAGAGGA Direct Loss 1 0.039834962514755 1 0.0986772775650024 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1B ENSG00000160208 CDS Human protein_coding chr21:45107407 chr21:45107407 synonymous SNV . 0 21 hm5C_associated_SNPs_1991 0 0 1 0 1 RRP1B chr21:45107397 3'AG 45107397 Downstream 11bp
chr20 3888598 3888598 1 + C T UCEC 3888598 + 3888578 3888618 41 CCATGGTTTGGACTGGATATCGGTGGAACTCTGGTCAAGCT CCATGGTTTGGACTGGATATTGGTGGAACTCTGGTCAAGCT Direct Loss 1 0.635940557991475 1 0.56954562664032 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PANK2 ENSG00000125779 CDS Human protein_coding chr20:3888598 chr20:3888598 synonymous SNV . 0 21 hm5C_associated_SNPs_1992 0 0 1 0 1 PANK2 chr20:3888573 3'AG 3888573 Downstream 26bp
chr11 93530714 93530714 1 + C T UCEC 93530714 + 93530694 93530734 41 TTGTTAGTTTCATAAACAGACCTTGAGTTCCATCATGATGC TTGTTAGTTTCATAAACAGATCTTGAGTTCCATCATGATGC Direct Loss 1 0.0296722523334428 1 0.021747887134552 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MED17 ENSG00000042429 CDS Human protein_coding chr11:93530714 chr11:93530714 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1993 0 0 0 0 1 MED17 chr11:93530701 3'AG 93530701 Downstream 14bp
chr17 73750868 73750868 1 + C T UCEC 73750868 + 73750848 73750888 41 ACCACACTGCCCAGGGACTACTCCACCCTCACCTCCGTCTC ACCACACTGCCCAGGGACTATTCCACCCTCACCTCCGTCTC Direct Loss 1 0.675046179965362 1 0.653917551040649 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73750868 chr17:73750868 synonymous SNV . 0 21 hm5C_associated_SNPs_1994 0 0 0 0 1 ITGB4 chr17:73750896 5'GT 73750896 Upstream 29bp
chr11 58379202 58379202 1 + C A UCEC 58379202 + 58379182 58379222 41 AATTAGAGAGGATGAGGAACCTCCAAGGAAGTGAGTAGGCA AATTAGAGAGGATGAGGAACATCCAAGGAAGTGAGTAGGCA Direct Loss 1 0.772682042389263 1 0.729893684387207 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58379202 chr11:58379202 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_1996 0 0 1 0 1 ZFP91 chr11:58379211 5'GT 58379211 Upstream 10bp
chr16 70349955 70349955 1 + C T UCEC 70349955 + 70349935 70349975 41 ACCAAGTGGAAGTCCTGCAGCGGGATCCAAACTCCCCTCTG ACCAAGTGGAAGTCCTGCAGTGGGATCCAAACTCCCCTCTG Direct Loss 1 0.95315043122033 1 0.942500948905945 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control DDX19B ENSG00000157349;ENSG00000260537 CDS Human other chr16:70349955 chr16:70349955 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_1997 0 0 1 0 2 DDX19B chr16:70349872 3'AG 70349872 Downstream 84bp
chr16 70349955 70349955 1 + C T UCEC 70349955 + 70349935 70349975 41 ACCAAGTGGAAGTCCTGCAGCGGGATCCAAACTCCCCTCTG ACCAAGTGGAAGTCCTGCAGTGGGATCCAAACTCCCCTCTG Direct Loss 1 0.95315043122033 1 0.942500948905945 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control DDX19B ENSG00000157349;ENSG00000260537 CDS Human other chr16:70349955 chr16:70349955 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_1997 0 0 1 0 2 DDX19B chr16:70350007 5'GT 70350007 Upstream 53bp
chr1 7845627 7845627 1 + C A UCEC 7845627 + 7845607 7845647 41 GCCCTCAACTATGCTCTCCGCTGTGTCCACAGCGTTCAAGG GCCCTCAACTATGCTCTCCGATGTGTCCACAGCGTTCAAGG Direct Loss 1 0.355279531448151 1 0.0757975876331329 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PER3 ENSG00000049246 CDS Human protein_coding chr1:7845627 chr1:7845627 synonymous SNV . 0 21 hm5C_associated_SNPs_1998 0 0 0 0 1 PER3 chr1:7845646 5'GT 7845646 Upstream 20bp
chr22 24583360 24583360 1 + C T UCEC 24583360 + 24583340 24583380 41 GACGACTTCACCCTGCACAGCGGGCGCGTCCTGCCCCCAGG GACGACTTCACCCTGCACAGTGGGCGCGTCCTGCCCCCAGG Direct Loss 1 0.622520585094918 1 0.634078979492188 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24583360 chr22:24583360 synonymous SNV . 0 21 hm5C_associated_SNPs_1999 0 0 0 0 1 SUSD2 chr22:24583418 5'GT 24583418 Upstream 59bp
chrX 106046129 106046129 1 + C T UCEC 106046129 + 106046109 106046149 41 TTCTGAAAAATGCGCTGAAGCTGTGGCTGATGGAAAGGTCC TTCTGAAAAATGCGCTGAAGTTGTGGCTGATGGAAAGGTCC Direct Loss 1 0.558087008378377 1 0.112275183200836 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TBC1D8B ENSG00000133138 CDS Human protein_coding chrX:106046129 chrX:106046129 synonymous SNV . 0 21 hm5C_associated_SNPs_2000 0 0 1 0 1 TBC1D8B chrX:106046213 5'GT 106046213 Upstream 85bp
chr10 94822661 94822661 1 + C T UCEC 94822661 + 94822641 94822681 41 GGGGTTGCGGCTGGACGAGGCGCAGTGCGCCACGCTGGCCC GGGGTTGCGGCTGGACGAGGTGCAGTGCGCCACGCTGGCCC Direct Loss 1 0.731374179506097 1 0.45263546705246 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94822661 chr10:94822661 nonsynonymous SNV 0.467 0 21 hm5C_associated_SNPs_2001 0 0 0 0 1 CYP26C1 chr10:94822752 5'GT 94822752 Upstream 92bp
chr7 55466117 55466117 1 + C T UCEC 55466117 + 55466097 55466137 41 GGGTGGGAAATTATTCCAGGCATAGCCCTTTTGTACCTGCA GGGTGGGAAATTATTCCAGGTATAGCCCTTTTGTACCTGCA Direct Loss 1 0.0431370795450116 1 0.0993095636367798 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55466117 chr7:55466117 synonymous SNV . 0 21 hm5C_associated_SNPs_2002 0 0 0 0 1 LANCL2 chr7:55466116 3'AG 55466116 Downstream 2bp
chr13 114292034 114292034 1 + C A UCEC 114292034 + 114292014 114292054 41 TATCCGGAAGCTTCTACAGCCGTCTGTCCTGTGGAACTGCG TATCCGGAAGCTTCTACAGCAGTCTGTCCTGTGGAACTGCG Direct Loss 1 0.225522002091357 1 0.0241870582103729 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114292034 chr13:114292034 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_2003 0 0 1 0 1 TFDP1 chr13:114291935 3'AG 114291935 Downstream 100bp
chr1 180010799 180010799 1 + C A UCEC 180010799 + 180010779 180010819 41 AACCCCTTTTATTTAAAGGTCCATGCAGAATCATTACAGCA AACCCCTTTTATTTAAAGGTACATGCAGAATCATTACAGCA Direct Loss 1 0.0168897378231422 1 0.0359240472316742 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEP350 ENSG00000135837 CDS Human protein_coding chr1:180010799 chr1:180010799 synonymous SNV . 0 21 hm5C_associated_SNPs_2004 0 0 1 0 1 CEP350 chr1:180010797 3'AG 180010797 Downstream 3bp
chr7 130021497 130021497 1 + C T UCEC 130021497 + 130021477 130021517 41 TTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGT TTCTGGCGGGGGCCTGCCCATCCTGGCTCCCCCATCGACGT Direct Loss 1 0.535360018421069 1 0.0851086676120758 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021497 chr7:130021497 synonymous SNV . 0 21 hm5C_associated_SNPs_2005 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 27bp
chr7 130021497 130021497 1 + C T UCEC 130021497 + 130021477 130021517 41 TTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGT TTCTGGCGGGGGCCTGCCCATCCTGGCTCCCCCATCGACGT Direct Loss 1 0.535360018421069 1 0.0851086676120758 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021497 chr7:130021497 synonymous SNV . 0 21 hm5C_associated_SNPs_2005 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 25bp
chr12 69115884 69115884 1 + C T UCEC 69115884 + 69115864 69115904 41 TCCCGTTGTTTCTTTTGAAGCTGGACGTTAGAAAAGGTTTT TCCCGTTGTTTCTTTTGAAGTTGGACGTTAGAAAAGGTTTT Direct Loss 1 0.6799744529907 1 0.117405652999878 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69115884 chr12:69115884 synonymous SNV . 0 21 hm5C_associated_SNPs_2006 0 0 0 0 2 NUP107 chr12:69115884 3'AG 69115884 Downstream 1bp
chr12 69115884 69115884 1 + C T UCEC 69115884 + 69115864 69115904 41 TCCCGTTGTTTCTTTTGAAGCTGGACGTTAGAAAAGGTTTT TCCCGTTGTTTCTTTTGAAGTTGGACGTTAGAAAAGGTTTT Direct Loss 1 0.6799744529907 1 0.117405652999878 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69115884 chr12:69115884 synonymous SNV . 0 21 hm5C_associated_SNPs_2006 0 0 0 0 2 NUP107 chr12:69115932 5'GT 69115932 Upstream 49bp
chr1 25679441 25679441 1 + C A UCEC 25679441 + 25679421 25679461 41 TGATTGCATCTATGTGGATTCTTTTTGGAGGTTATGTTGCT TGATTGCATCTATGTGGATTATTTTTGGAGGTTATGTTGCT Direct Loss 1 0.0927403678942386 1 0.0175353288650513 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25679441 chr1:25679441 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_2007 0 0 1 1 2 TMEM50A chr1:25679373 3'AG 25679373 Downstream 69bp
chr1 25679441 25679441 1 + C A UCEC 25679441 + 25679421 25679461 41 TGATTGCATCTATGTGGATTCTTTTTGGAGGTTATGTTGCT TGATTGCATCTATGTGGATTATTTTTGGAGGTTATGTTGCT Direct Loss 1 0.0927403678942386 1 0.0175353288650513 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25679441 chr1:25679441 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_2007 0 0 1 1 2 TMEM50A chr1:25679465 5'GT 25679465 Upstream 25bp
chr3 124456785 124456785 1 + C T UCEC 124456785 + 124456765 124456805 41 GCACCCAAAGAACTCAGCTTCGGTGCACGTGCAGAGCTGCC GCACCCAAAGAACTCAGCTTTGGTGCACGTGCAGAGCTGCC Direct Loss 1 0.387841753293366 1 0.695327401161194 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UMPS ENSG00000114491 CDS Human protein_coding chr3:124456785 chr3:124456785 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_2008 0 0 1 0 1 UMPS chr3:124456762 3'AG 124456762 Downstream 24bp
chr11 34129866 34129866 1 + C T UCEC 34129866 + 34129846 34129886 41 TCTTTGTTGTAGTTGGGGATCGAGGAAAAGATCAGGTATGG TCTTTGTTGTAGTTGGGGATTGAGGAAAAGATCAGGTATGG Direct Loss 1 0.649346877801879 1 0.608611404895782 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129866 chr11:34129866 stopgain 0.950 1 21 hm5C_associated_SNPs_2009 0 0 1 0 1 NAT10 chr11:34129880 5'GT 34129880 Upstream 15bp
chr5 159344770 159344770 1 + C A UCEC 159344770 + 159344750 159344790 41 GCTGTCAAACTTTTTAAGTTCTCCAGGGAAAAGAAAGCAGC GCTGTCAAACTTTTTAAGTTATCCAGGGAAAAGAAAGCAGC Direct Loss 1 0.605771514882115 1 0.784552097320557 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout ADRA1B ENSG00000170214 CDS Human protein_coding chr5:159344770 chr5:159344770 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_2011 0 0 0 0 1 ADRA1B chr5:159344861 5'GT 159344861 Upstream 92bp
chr17 47119679 47119679 1 + C T UCEC 47119679 + 47119659 47119699 41 ATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGAA ATCGAGAATTGTTGCAGGGCTGAGCAGGAAATAATGAAGAA Direct Loss 1 0.350009570899025 1 0.275057077407837 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119679 chr17:47119679 synonymous SNV . 0 21 hm5C_associated_SNPs_2012 0 0 1 0 1 IGF2BP1 chr17:47119604 3'AG 47119604 Downstream 76bp
chr3 126736355 126736355 1 + C T UCEC 126736355 + 126736335 126736375 41 GCCCACCAGAGCTGGGGGAGCGGCCGGATGAGCTGGGCTTC GCCCACCAGAGCTGGGGGAGTGGCCGGATGAGCTGGGCTTC Direct Loss 1 0.383165128300217 1 0.84181147813797 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126736355 chr3:126736355 nonsynonymous SNV 0.865 3 21 hm5C_associated_SNPs_2013 0 0 1 0 1 PLXNA1 chr3:126736268 3'AG 126736268 Downstream 88bp
chr7 77227168 77227168 1 + C A UCEC 77227168 + 77227148 77227188 41 TCTTTATTTAGGAGGATGAACAAGCAAGAACAGACTACTTC TCTTTATTTAGGAGGATGAAAAAGCAAGAACAGACTACTTC Direct Loss 1 0.382104601068583 1 0.44337061047554 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77227168 chr7:77227168 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_2014 0 0 1 0 2 PTPN12 chr7:77227159 3'AG 77227159 Downstream 10bp
chr7 77227168 77227168 1 + C A UCEC 77227168 + 77227148 77227188 41 TCTTTATTTAGGAGGATGAACAAGCAAGAACAGACTACTTC TCTTTATTTAGGAGGATGAAAAAGCAAGAACAGACTACTTC Direct Loss 1 0.382104601068583 1 0.44337061047554 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77227168 chr7:77227168 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_2014 0 0 1 0 2 PTPN12 chr7:77227218 5'GT 77227218 Upstream 51bp
chr11 114272570 114272570 1 + C T UCEC 114272570 + 114272550 114272590 41 ATGGAAGGCCTATCAAAATTCAATTTAGATCAGGTAACTGC ATGGAAGGCCTATCAAAATTTAATTTAGATCAGGTAACTGC Direct Loss 1 0.456606449587882 1 0.0379801392555237 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114272570 chr11:114272570 stopgain 0.999 1 21 hm5C_associated_SNPs_2015 0 0 0 0 1 RBM7 chr11:114272582 5'GT 114272582 Upstream 13bp
chr2 71780268 71780268 1 + C T UCEC 71780268 + 71780248 71780288 41 CGGGAACAAGTTCGACATGACCTGCCTGCCGCTGGCCTCCA CGGGAACAAGTTCGACATGATCTGCCTGCCGCTGGCCTCCA Direct Loss 1 0.155317989487476 1 0.0220529139041901 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71780268 chr2:71780268 nonsynonymous SNV 0.992 3 21 hm5C_associated_SNPs_2016 0 0 0 0 1 DYSF chr2:71780318 5'GT 71780318 Upstream 51bp
chr7 72397355 72397355 1 + C T UCEC 72397355 + 72397335 72397375 41 TGTAGACCAGAGCAGATAATCAGCTCAACACTGTCCTCACC TGTAGACCAGAGCAGATAATTAGCTCAACACTGTCCTCACC Direct Loss 1 0.393359245667739 1 0.715277791023254 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POM121 ENSG00000196313 CDS Human protein_coding chr7:72397355 chr7:72397355 synonymous SNV . 0 21 hm5C_associated_SNPs_2017 0 0 1 0 1 POM121 chr7:72397340 3'AG 72397340 Downstream 16bp
chr12 132239012 132239012 1 + C T UCEC 132239012 + 132238992 132239032 41 GCCAGGAACGGCCTGAAGTTCGAGACCAGTGTTCGTGCCAA GCCAGGAACGGCCTGAAGTTTGAGACCAGTGTTCGTGCCAA Direct Loss 1 0.891614034031744 1 0.862968683242798 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132239012 chr12:132239012 synonymous SNV . 0 21 hm5C_associated_SNPs_2018 0 0 1 0 1 SFSWAP chr12:132238913 3'AG 132238913 Downstream 100bp
chr19 34959978 34959978 1 + C T UCEC 34959978 + 34959958 34959998 41 TGACGTTCTCATAGTTGATTCAGATGAAGAAGATTCTTCAA TGACGTTCTCATAGTTGATTTAGATGAAGAAGATTCTTCAA Direct Loss 1 0.469602967670884 1 0.166555792093277 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBA2 ENSG00000126261 CDS Human protein_coding chr19:34959978 chr19:34959978 nonsynonymous SNV 0.993 1 21 hm5C_associated_SNPs_2020 0 0 1 0 1 UBA2 chr19:34959945 3'AG 34959945 Downstream 34bp
chr18 33289684 33289684 1 + C T UCEC 33289684 + 33289664 33289704 41 TTAGAGACTGCAATGGAAGTCGGTCCCAGCAGTGGCTTCTT TTAGAGACTGCAATGGAAGTTGGTCCCAGCAGTGGCTTCTT Direct Loss 1 0.420434711988622 1 0.529172837734222 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT1 ENSG00000141429 CDS Human protein_coding chr18:33289684 chr18:33289684 nonsynonymous SNV 0.993 2 21 hm5C_associated_SNPs_2022 0 0 1 0 1 GALNT1 chr18:33289588 3'AG 33289588 Downstream 97bp
chr1 173819569 173819569 1 + C T UCEC 173819569 + 173819549 173819589 41 TTAATCAGACTAATGGAGACCCAAGAGGAAGATGTGGTCCT TTAATCAGACTAATGGAGACTCAAGAGGAAGATGTGGTCCT Direct Loss 1 0.177048640969287 1 0.577068746089935 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DARS2 ENSG00000117593 CDS Human protein_coding chr1:173819569 chr1:173819569 synonymous SNV . 0 21 hm5C_associated_SNPs_2023 0 0 1 0 1 DARS2 chr1:173819617 5'GT 173819617 Upstream 49bp
chr2 136537910 136537910 1 + C T UCEC 136537910 + 136537890 136537930 41 GACTTCAGTGAGAGTAACATCGTCAGAACCCCCAAACCCTG GACTTCAGTGAGAGTAACATTGTCAGAACCCCCAAACCCTG Direct Loss 1 0.811578465277596 1 0.435646772384644 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBXN4 ENSG00000144224 CDS Human protein_coding chr2:136537910 chr2:136537910 nonsynonymous SNV 0.037 0 21 hm5C_associated_SNPs_2024 0 0 1 0 1 UBXN4 chr2:136537955 5'GT 136537955 Upstream 46bp
chr19 49464798 49464798 1 + C A UCEC 49464798 + 49464778 49464818 41 CCTGTCTCCAGGACGGCCTCCTCTCCTACTTTGGGACGCCC CCTGTCTCCAGGACGGCCTCATCTCCTACTTTGGGACGCCC Direct Loss 1 0.153533493499201 1 0.110549628734589 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BAX ENSG00000087088 CDS Human protein_coding chr19:49464798 chr19:49464798 nonsynonymous SNV 0.922 1 21 hm5C_associated_SNPs_2025 0 0 1 0 1 BAX chr19:49464789 3'AG 49464789 Downstream 10bp
chr16 87436562 87436562 1 + C G UCEC 87436562 + 87436542 87436582 41 CTCAATGCTAATCAGGCCTTCTTCCTGTTGGTGAACGGACA CTCAATGCTAATCAGGCCTTGTTCCTGTTGGTGAACGGACA Direct Loss 1 0.079059068321917 1 0.111126065254211 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MAP1LC3B ENSG00000140941 CDS Human protein_coding chr16:87436562 chr16:87436562 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_2026 0 0 0 0 2 MAP1LC3B chr16:87436529 3'AG 87436529 Downstream 34bp
chr16 87436562 87436562 1 + C G UCEC 87436562 + 87436542 87436582 41 CTCAATGCTAATCAGGCCTTCTTCCTGTTGGTGAACGGACA CTCAATGCTAATCAGGCCTTGTTCCTGTTGGTGAACGGACA Direct Loss 1 0.079059068321917 1 0.111126065254211 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MAP1LC3B ENSG00000140941 CDS Human protein_coding chr16:87436562 chr16:87436562 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_2026 0 0 0 0 2 MAP1LC3B chr16:87436532 3'AG 87436532 Downstream 31bp
chr20 61595023 61595023 1 + C T UCEC 61595023 + 61595003 61595043 41 TTCTTCGAGGAGACCTTCCCCGACGCCAAGGTGAGTCGGGG TTCTTCGAGGAGACCTTCCCTGACGCCAAGGTGAGTCGGGG Direct Loss 1 0.493413828706717 1 0.205996721982956 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61595023 chr20:61595023 synonymous SNV . 0 21 hm5C_associated_SNPs_2027 0 0 1 0 2 SLC17A9 chr20:61594936 3'AG 61594936 Downstream 88bp
chr20 61595023 61595023 1 + C T UCEC 61595023 + 61595003 61595043 41 TTCTTCGAGGAGACCTTCCCCGACGCCAAGGTGAGTCGGGG TTCTTCGAGGAGACCTTCCCTGACGCCAAGGTGAGTCGGGG Direct Loss 1 0.493413828706717 1 0.205996721982956 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61595023 chr20:61595023 synonymous SNV . 0 21 hm5C_associated_SNPs_2027 0 0 1 0 2 SLC17A9 chr20:61595032 5'GT 61595032 Upstream 10bp
chr17 27049885 27049885 1 + C T UCEC 27049885 + 27049865 27049905 41 GCTGTGAAGAAGCTGTATGACATTGATGTGGCCAAGGTCAA GCTGTGAAGAAGCTGTATGATATTGATGTGGCCAAGGTCAA Direct Loss 1 0.337529329336892 1 0.0435357987880707 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL23A ENSG00000198242 CDS Human protein_coding chr17:27049885 chr17:27049885 synonymous SNV . 0 21 hm5C_associated_SNPs_2028 0 0 1 0 1 RPL23A chr17:27049917 5'GT 27049917 Upstream 33bp
chr3 10320677 10320677 1 + C T UCEC 10320677 + 10320657 10320697 41 CCCTCACCTTGGCTGCCTTGCGTGAGAACACCAGTCGCCTC CCCTCACCTTGGCTGCCTTGTGTGAGAACACCAGTCGCCTC Direct Loss 1 0.762300704089034 1 0.713920950889587 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TATDN2 ENSG00000157014 CDS Human other chr3:10320677 chr3:10320677 nonsynonymous SNV 0.710 3 21 hm5C_associated_SNPs_2029 0 0 1 0 2 TATDN2 chr3:10320718 5'GT 10320718 Upstream 42bp
chr3 10320677 10320677 1 + C T UCEC 10320677 + 10320657 10320697 41 CCCTCACCTTGGCTGCCTTGCGTGAGAACACCAGTCGCCTC CCCTCACCTTGGCTGCCTTGTGTGAGAACACCAGTCGCCTC Direct Loss 1 0.762300704089034 1 0.713920950889587 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TATDN2 ENSG00000157014 CDS Human protein_coding chr3:10320677 chr3:10320677 nonsynonymous SNV 0.710 3 21 hm5C_associated_SNPs_2029 0 0 1 0 2 TATDN2 chr3:10320747 5'GT 10320747 Upstream 71bp
chr21 45560184 45560184 1 + C T UCEC 45560184 + 45560164 45560204 41 AGGTGAATAAAGAAGTGGAGCGTGTCCTGAAGGAGTTCCAC AGGTGAATAAAGAAGTGGAGTGTGTCCTGAAGGAGTTCCAC Direct Loss 1 0.271197545380662 1 0.0603040158748627 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45560184 chr21:45560184 nonsynonymous SNV 0.028 4 21 hm5C_associated_SNPs_2031 0 0 1 0 2 C21orf33 chr21:45560132 3'AG 45560132 Downstream 53bp
chr21 45560184 45560184 1 + C T UCEC 45560184 + 45560164 45560204 41 AGGTGAATAAAGAAGTGGAGCGTGTCCTGAAGGAGTTCCAC AGGTGAATAAAGAAGTGGAGTGTGTCCTGAAGGAGTTCCAC Direct Loss 1 0.271197545380662 1 0.0603040158748627 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45560184 chr21:45560184 nonsynonymous SNV 0.028 4 21 hm5C_associated_SNPs_2031 0 0 1 0 2 C21orf33 chr21:45560224 5'GT 45560224 Upstream 41bp
chr1 40724018 40724018 1 + C A UCEC 40724018 + 40723998 40724038 41 ATCTTCGGGGCCGTGCTGCTCTTTTCCTGGACAGTGTATCT ATCTTCGGGGCCGTGCTGCTATTTTCCTGGACAGTGTATCT Direct Loss 1 0.216059184512089 1 0.0158885717391968 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMPSTE24 ENSG00000084073 CDS Human protein_coding chr1:40724018 chr1:40724018 synonymous SNV . 0 21 hm5C_associated_SNPs_2033 0 0 1 0 1 ZMPSTE24 chr1:40724066 5'GT 40724066 Upstream 49bp
chr19 54942079 54942079 1 + C T UCEC 54942079 + 54942059 54942099 41 TGTGCCTCAGTTCCCTTCAGCGCAGGTCGGTGGGTGGGCGC TGTGCCTCAGTTCCCTTCAGTGCAGGTCGGTGGGTGGGCGC Direct Loss 1 0.70698418768595 1 0.390645861625671 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54942079 chr19:54942079 nonsynonymous SNV 0.738 2 21 hm5C_associated_SNPs_2035 0 0 0 0 2 TTYH1 chr19:54941991 3'AG 54941991 Downstream 89bp
chr19 54942079 54942079 1 + C T UCEC 54942079 + 54942059 54942099 41 TGTGCCTCAGTTCCCTTCAGCGCAGGTCGGTGGGTGGGCGC TGTGCCTCAGTTCCCTTCAGTGCAGGTCGGTGGGTGGGCGC Direct Loss 1 0.70698418768595 1 0.390645861625671 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54942079 chr19:54942079 nonsynonymous SNV 0.738 2 21 hm5C_associated_SNPs_2035 0 0 0 0 2 TTYH1 chr19:54942083 5'GT 54942083 Upstream 5bp
chr8 124811871 124811871 1 + C T UCEC 124811871 + 124811851 124811891 41 TGTCCAAAGGTACAAGACTTCGAAAACTGCCAGATATATTT TGTCCAAAGGTACAAGACTTTGAAAACTGCCAGATATATTT Direct Loss 1 0.719948086218734 1 0.546759903430939 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124811871 chr8:124811871 stopgain 0.998 1 21 hm5C_associated_SNPs_2036 0 0 1 0 1 FAM91A1 chr8:124811894 5'GT 124811894 Upstream 24bp
chr6 144747498 144747498 1 + C T UCEC 144747498 + 144747478 144747518 41 AGATCCTGCTCAGCTGGGTGCGTCAGACCACCAGGCCCTAC AGATCCTGCTCAGCTGGGTGTGTCAGACCACCAGGCCCTAC Direct Loss 1 0.295370591725369 1 0.0854175984859467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144747498 chr6:144747498 nonsynonymous SNV 0.977 5 21 hm5C_associated_SNPs_2037 0 0 1 0 2 UTRN chr6:144747423 3'AG 144747423 Downstream 76bp
chr6 144747498 144747498 1 + C T UCEC 144747498 + 144747478 144747518 41 AGATCCTGCTCAGCTGGGTGCGTCAGACCACCAGGCCCTAC AGATCCTGCTCAGCTGGGTGTGTCAGACCACCAGGCCCTAC Direct Loss 1 0.295370591725369 1 0.0854175984859467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144747498 chr6:144747498 nonsynonymous SNV 0.977 5 21 hm5C_associated_SNPs_2037 0 0 1 0 2 UTRN chr6:144747595 5'GT 144747595 Upstream 98bp
chr2 27277595 27277595 1 + C T UCEC 27277595 + 27277575 27277615 41 TCACTTCCTGCCATGGGCTTCGAGAAGATCGAGAGCCCCGT TCACTTCCTGCCATGGGCTTTGAGAAGATCGAGAGCCCCGT Direct Loss 1 0.665816878848091 1 0.801217436790466 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27277595 chr2:27277595 stopgain 0.999 0 21 hm5C_associated_SNPs_2038 0 0 1 0 1 AGBL5 chr2:27277498 3'AG 27277498 Downstream 98bp
chr9 100773653 100773653 1 + C T UCEC 100773653 + 100773633 100773673 41 GTAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGAGGT GTAGAAGGGGATGAGGACGATGATGAAGTCAGTGAGGAGGT Direct Loss 1 0.449151308051845 1 0.4148850440979 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773653 chr9:100773653 synonymous SNV . 0 21 hm5C_associated_SNPs_2039 0 0 1 0 1 ANP32B chr9:100773671 5'GT 100773671 Upstream 19bp
chr1 27631567 27631567 1 + C T UCEC 27631567 + 27631547 27631587 41 AAGGAGACCACCAACCTGGTCCGTGTGCTCCAAGGGGATGA AAGGAGACCACCAACCTGGTTCGTGTGCTCCAAGGGGATGA Direct Loss 1 0.149097139567042 1 0.0601920187473297 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27631567 chr1:27631567 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_2040 0 0 1 0 2 WDTC1 chr1:27631492 3'AG 27631492 Downstream 76bp
chr1 27631567 27631567 1 + C T UCEC 27631567 + 27631547 27631587 41 AAGGAGACCACCAACCTGGTCCGTGTGCTCCAAGGGGATGA AAGGAGACCACCAACCTGGTTCGTGTGCTCCAAGGGGATGA Direct Loss 1 0.149097139567042 1 0.0601920187473297 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27631567 chr1:27631567 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_2040 0 0 1 0 2 WDTC1 chr1:27631550 3'AG 27631550 Downstream 18bp
chr11 10783524 10783524 1 + C A UCEC 10783524 + 10783504 10783544 41 TTAAAAATGGTGTCCAGCTTCTTTCCAGAGCCTATACTATT TTAAAAATGGTGTCCAGCTTATTTCCAGAGCCTATACTATT Direct Loss 1 0.041329570971555 1 0.111215144395828 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTR9 ENSG00000198730 CDS Human protein_coding chr11:10783524 chr11:10783524 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_2041 0 0 1 0 2 CTR9 chr11:10783494 3'AG 10783494 Downstream 31bp
chr11 10783524 10783524 1 + C A UCEC 10783524 + 10783504 10783544 41 TTAAAAATGGTGTCCAGCTTCTTTCCAGAGCCTATACTATT TTAAAAATGGTGTCCAGCTTATTTCCAGAGCCTATACTATT Direct Loss 1 0.041329570971555 1 0.111215144395828 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTR9 ENSG00000198730 CDS Human protein_coding chr11:10783524 chr11:10783524 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_2041 0 0 1 0 2 CTR9 chr11:10783601 5'GT 10783601 Upstream 78bp
chr11 65402834 65402834 1 + C T UCEC 65402834 + 65402814 65402854 41 CAACACGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATG CAACACGCCCTCCCTGCTGGTGCTGCGCCATGTCCTGGATG Direct Loss 1 0.109484807635814 1 0.0556133091449738 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402834 chr11:65402834 nonsynonymous SNV 0.992 4 21 hm5C_associated_SNPs_2042 0 0 1 0 1 PCNX3 chr11:65402919 5'GT 65402919 Upstream 86bp
chr11 120099596 120099596 1 + C T UCEC 120099596 + 120099576 120099616 41 GGTGTGGACAGTTCTGTGTTCGAGGCTCTGCCCAAGGCCTC GGTGTGGACAGTTCTGTGTTTGAGGCTCTGCCCAAGGCCTC Direct Loss 1 0.829919666707777 1 0.754854440689087 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control OAF ENSG00000184232 CDS Human protein_coding chr11:120099596 chr11:120099596 synonymous SNV . 0 21 hm5C_associated_SNPs_2043 0 0 1 0 1 OAF chr11:120099577 3'AG 120099577 Downstream 20bp
chr7 130021518 130021518 1 + C T UCEC 130021518 + 130021498 130021538 41 CCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCAT CCTGGCTCCCCCATCGACGTTCGAGTGCCCTTCCCCAGCAT Direct Loss 1 0.480223964499103 1 0.781018376350403 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021518 chr7:130021518 synonymous SNV . 0 21 hm5C_associated_SNPs_2044 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 48bp
chr7 130021518 130021518 1 + C T UCEC 130021518 + 130021498 130021538 41 CCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCAT CCTGGCTCCCCCATCGACGTTCGAGTGCCCTTCCCCAGCAT Direct Loss 1 0.480223964499103 1 0.781018376350403 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021518 chr7:130021518 synonymous SNV . 0 21 hm5C_associated_SNPs_2044 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 4bp
chr21 34787311 34787311 1 + C T UCEC 34787311 + 34787291 34787331 41 GCACGAGGCCTGTTGTCTACCAAGTGCAGTTTAAATAGTAA GCACGAGGCCTGTTGTCTACTAAGTGCAGTTTAAATAGTAA Direct Loss 1 0.56957073397788 1 0.483893185853958 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFNGR2 ENSG00000159128 CDS Human protein_coding chr21:34787311 chr21:34787311 stopgain 0.341 0 21 hm5C_associated_SNPs_2045 0 0 0 0 1 IFNGR2 chr21:34787327 5'GT 34787327 Upstream 17bp
chr19 55899674 55899674 1 + C T UCEC 55899674 + 55899654 55899694 41 CTGTGATGGTGAAGAGGAAGCGGACCCGCCCCACCAAGAGC CTGTGATGGTGAAGAGGAAGTGGACCCGCCCCACCAAGAGC Direct Loss 1 0.625258159527202 1 0.514826714992523 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899674 chr19:55899674 nonsynonymous SNV 0.937 1 21 hm5C_associated_SNPs_2046 0 0 1 0 1 RPL28 chr19:55899611 3'AG 55899611 Downstream 64bp
chr3 40499425 40499425 1 + C A UCEC 40499425 + 40499405 40499445 41 GGCCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAA GGCCGGGTGGCCTATGTCTCATTTGGACCTCATGCCGGAAA Direct Loss 1 0.404186404363225 1 0.0385578572750092 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL14 ENSG00000188846 CDS Human protein_coding chr3:40499425 chr3:40499425 synonymous SNV . 0 21 hm5C_associated_SNPs_2047 0 0 0 0 1 RPL14 chr3:40499381 3'AG 40499381 Downstream 45bp
chr11 65348823 65348823 1 + C T UCEC 65348823 + 65348803 65348843 41 CCCTGAGGCCCCAAGGCCCCCGGAAACCTCACCAGAGATGA CCCTGAGGCCCCAAGGCCCCTGGAAACCTCACCAGAGATGA Direct Loss 1 0.63668109586444 1 0.496847152709961 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65348823 chr11:65348823 nonsynonymous SNV 0.560 0 21 hm5C_associated_SNPs_2048 0 0 1 0 1 EHBP1L1 chr11:65348844 5'GT 65348844 Upstream 22bp
chr19 45375183 45375183 1 + C A UCEC 45375183 + 45375163 45375203 41 ACGACAGTGGCCCTCTGCATCTCCAAAGAGGGCCGCCCACC ACGACAGTGGCCCTCTGCATATCCAAAGAGGGCCGCCCACC Direct Loss 1 0.849626936294797 1 0.940126776695251 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45375183 chr19:45375183 synonymous SNV . 0 21 hm5C_associated_SNPs_2050 0 0 1 0 1 NECTIN2 chr19:45375110 3'AG 45375110 Downstream 74bp
chr12 102517803 102517803 1 + C A UCEC 102517803 + 102517783 102517823 41 GGCATTGCAGCTTTCTATGGCGGAGAACAACAAACAGGTTG GGCATTGCAGCTTTCTATGGAGGAGAACAACAAACAGGTTG Direct Loss 1 0.697551548745943 1 0.78949761390686 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PARPBP ENSG00000185480 CDS Human protein_coding chr12:102517803 chr12:102517803 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_2051 0 0 1 0 1 PARPBP chr12:102517819 5'GT 102517819 Upstream 17bp
chr9 124528993 124528993 1 + C A UCEC 124528993 + 124528973 124529013 41 TCGCCAAGGTCACCCAGAACCTGGCCAACTTTGCCAAGTGA TCGCCAAGGTCACCCAGAACATGGCCAACTTTGCCAAGTGA Direct Loss 1 0.357804584988505 1 0.45337975025177 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124528993 chr9:124528993 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_2052 0 0 0 0 1 DAB2IP chr9:124529009 5'GT 124529009 Upstream 17bp
chrX 47426451 47426451 1 + C T UCEC 47426451 + 47426431 47426471 41 CAGCCCAGCCAGCGTGTCCTCGGGGAGGAAGTCCCCACATT CAGCCCAGCCAGCGTGTCCTTGGGGAGGAAGTCCCCACATT Direct Loss 1 0.958557565186299 1 0.925739288330078 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control ARAF ENSG00000078061 CDS Human protein_coding chrX:47426451 chrX:47426451 nonsynonymous SNV 0.994 0 21 hm5C_associated_SNPs_2053 0 0 1 2 2 ARAF chrX:47426385 3'AG 47426385 Downstream 67bp
chrX 47426451 47426451 1 + C T UCEC 47426451 + 47426431 47426471 41 CAGCCCAGCCAGCGTGTCCTCGGGGAGGAAGTCCCCACATT CAGCCCAGCCAGCGTGTCCTTGGGGAGGAAGTCCCCACATT Direct Loss 1 0.958557565186299 1 0.925739288330078 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control ARAF ENSG00000078061 CDS Human protein_coding chrX:47426451 chrX:47426451 nonsynonymous SNV 0.994 0 21 hm5C_associated_SNPs_2053 0 0 1 2 2 ARAF chrX:47426530 5'GT 47426530 Upstream 80bp
chr15 69747822 69747822 1 + C T UCEC 69747822 + 69747802 69747842 41 TCCGAGGAGTCTGATGATGACATGGGCTTTGGTCTTTTTGA TCCGAGGAGTCTGATGATGATATGGGCTTTGGTCTTTTTGA Direct Loss 1 0.450414246215609 1 0.591024935245514 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747822 chr15:69747822 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_2054 0 0 1 0 1 RPLP1 chr15:69747767 3'AG 69747767 Downstream 56bp
chr3 50220185 50220185 1 + C T UCEC 50220185 + 50220165 50220205 41 AGAGGCGCCGCAGAGCCCCGCGGTGTACGCCCGCATCGGGC AGAGGCGCCGCAGAGCCCCGTGGTGTACGCCCGCATCGGGC Direct Loss 1 0.379337005216606 1 0.698238015174866 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50220185 chr3:50220185 nonsynonymous SNV 0.798 0 21 hm5C_associated_SNPs_2057 0 0 0 0 1 SEMA3F chr3:50220216 5'GT 50220216 Upstream 32bp
chr1 145115809 145115809 1 + C T UCEC 145115809 + 145115789 145115829 41 ATGCGAAGTACTTGAACATGCATTCCACTTATGCCAAACTT ATGCGAAGTACTTGAACATGTATTCCACTTATGCCAAACTT Direct Loss 1 0.0490797356652572 1 0.06900355219841 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC22B ENSG00000223380 ncRNA_exonic Human other chr1:145115809 chr1:145115809 . . 0 21 hm5C_associated_SNPs_2058 0 0 1 0 1 SEC22B chr1:145115735 3'AG 145115735 Downstream 75bp
chr13 111111172 111111172 1 + C T UCEC 111111172 + 111111152 111111192 41 CGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAGG CGAAGCTATCAAAGGTCTTCTGGGACTGCCAGGACCCAAGG Direct Loss 1 0.704592377595864 1 0.873873770236969 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111172 chr13:111111172 nonsynonymous SNV 0.040 4 21 hm5C_associated_SNPs_2059 0 0 1 0 1 COL4A2 chr13:111111118 3'AG 111111118 Downstream 55bp
chr16 70589097 70589097 1 + C T UCEC 70589097 + 70589077 70589117 41 GGAGGAGAGCTGGTCTATTTCGAGATGGATCCTGTATGTTA GGAGGAGAGCTGGTCTATTTTGAGATGGATCCTGTATGTTA Direct Loss 1 0.91022163774733 1 0.717660129070282 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589097 chr16:70589097 synonymous SNV . 0 21 hm5C_associated_SNPs_2060 0 0 1 0 1 SF3B3 chr16:70589109 5'GT 70589109 Upstream 13bp
chr5 149751759 149751759 1 + C A UCEC 149751759 + 149751739 149751779 41 AGAGAGTAGTGAGGAGGGATCTGAAAGTGAGGAGGAGGCCC AGAGAGTAGTGAGGAGGGATATGAAAGTGAGGAGGAGGCCC Direct Loss 1 0.678311595795952 1 0.482751697301865 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149751759 chr5:149751759 nonsynonymous SNV 0.385 3 21 hm5C_associated_SNPs_2061 0 0 1 0 1 TCOF1 chr5:149751799 5'GT 149751799 Upstream 41bp
chr7 150704202 150704202 1 + C T UCEC 150704202 + 150704182 150704222 41 CACCCCAGGTTCTGTGTGTTCGGGCTCGGCTCCCGGGCATA CACCCCAGGTTCTGTGTGTTTGGGCTCGGCTCCCGGGCATA Direct Loss 1 0.774240823326492 1 0.886935293674469 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control NOS3 ENSG00000164867 CDS Human protein_coding chr7:150704202 chr7:150704202 synonymous SNV . 0 21 hm5C_associated_SNPs_2062 0 0 0 0 1 NOS3 chr7:150704190 3'AG 150704190 Downstream 13bp
chrX 152959718 152959718 1 + C T UCEC 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG CATCGATCTCTCCATGGTGATTGATGTGAGTGGGGTGGGGG Direct Loss 1 0.323472637542459 1 0.0698421001434326 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959718 nonsynonymous SNV 0.995 3 21 hm5C_associated_SNPs_2063 0 0 1 3 1 SLC6A8 chrX:152959722 5'GT 152959722 Upstream 5bp
chr16 67572572 67572572 1 + C T UCEC 67572572 + 67572552 67572592 41 TCTGAGGACAGCCTCTCCTTCAGGAGTTTCCCGGTCTTCAG TCTGAGGACAGCCTCTCCTTTAGGAGTTTCCCGGTCTTCAG Direct Loss 1 0.873244751363481 1 0.615157604217529 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572572 chr16:67572572 synonymous SNV . 0 21 hm5C_associated_SNPs_2064 0 0 0 0 1 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 10bp
chr2 192141711 192141711 1 + C A UCEC 192141711 + 192141691 192141731 41 GAACCTCTCAATGAGGAGACCTTCATCAACAACCTCAAGAA GAACCTCTCAATGAGGAGACATTCATCAACAACCTCAAGAA Direct Loss 1 0.387517886671305 1 0.0731813013553619 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYO1B ENSG00000128641 CDS Human protein_coding chr2:192141711 chr2:192141711 synonymous SNV . 0 21 hm5C_associated_SNPs_2065 0 0 1 0 2 MYO1B chr2:192141613 3'AG 192141613 Downstream 99bp
chr2 192141711 192141711 1 + C A UCEC 192141711 + 192141691 192141731 41 GAACCTCTCAATGAGGAGACCTTCATCAACAACCTCAAGAA GAACCTCTCAATGAGGAGACATTCATCAACAACCTCAAGAA Direct Loss 1 0.387517886671305 1 0.0731813013553619 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYO1B ENSG00000128641 CDS Human protein_coding chr2:192141711 chr2:192141711 synonymous SNV . 0 21 hm5C_associated_SNPs_2065 0 0 1 0 2 MYO1B chr2:192141756 5'GT 192141756 Upstream 46bp
chr10 14896127 14896127 1 + C A UCEC 14896127 + 14896107 14896147 41 CTATGTTTTTAATTTAGATCCTTCAAACATGATGTGAGAGG CTATGTTTTTAATTTAGATCATTCAAACATGATGTGAGAGG Direct Loss 1 0.175211241888944 1 0.22360548377037 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSPA14 ENSG00000187522 CDS Human protein_coding chr10:14896127 chr10:14896127 synonymous SNV . 0 21 hm5C_associated_SNPs_2067 0 0 0 0 1 HSPA14 chr10:14896124 3'AG 14896124 Downstream 4bp
chr20 30753183 30753183 1 + C T UCEC 30753183 + 30753163 30753203 41 CTTCTGGCTGCTAACGGGTACCATCGGCTTCTATGCAGCCT CTTCTGGCTGCTAACGGGTATCATCGGCTTCTATGCAGCCT Direct Loss 1 0.0410392448292804 1 0.29092064499855 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30753183 chr20:30753183 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_2068 0 0 1 0 1 TM9SF4 chr20:30753098 3'AG 30753098 Downstream 86bp
chr1 22331944 22331944 1 + C T UCEC 22331944 + 22331924 22331964 41 CCTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTG CCTCCTGGGCCACCAGGTTTTCCTGCAGTATGAGAAAAGTG Direct Loss 1 0.181393900793193 1 0.113208711147308 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331944 chr1:22331944 nonsynonymous SNV 0.916 4 21 hm5C_associated_SNPs_2070 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 5bp
chr1 22331944 22331944 1 + C T UCEC 22331944 + 22331924 22331964 41 CCTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTG CCTCCTGGGCCACCAGGTTTTCCTGCAGTATGAGAAAAGTG Direct Loss 1 0.181393900793193 1 0.113208711147308 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331944 chr1:22331944 nonsynonymous SNV 0.916 4 21 hm5C_associated_SNPs_2070 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 94bp
chr19 34868408 34868408 1 + C T UCEC 34868408 + 34868388 34868428 41 CATCTTCGCCCCTGTGCCAGCGTGTCCGGAGCGGTGACTGG CATCTTCGCCCCTGTGCCAGTGTGTCCGGAGCGGTGACTGG Direct Loss 1 0.235925858398115 1 0.542707622051239 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868408 chr19:34868408 nonsynonymous SNV 0.992 2 21 hm5C_associated_SNPs_2071 0 0 1 0 2 GPI chr19:34868408 5'GT 34868408 Upstream 1bp
chr19 34868408 34868408 1 + C T UCEC 34868408 + 34868388 34868428 41 CATCTTCGCCCCTGTGCCAGCGTGTCCGGAGCGGTGACTGG CATCTTCGCCCCTGTGCCAGTGTGTCCGGAGCGGTGACTGG Direct Loss 1 0.235925858398115 1 0.542707622051239 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868408 chr19:34868408 nonsynonymous SNV 0.992 2 21 hm5C_associated_SNPs_2071 0 0 1 0 2 GPI chr19:34868491 5'GT 34868491 Upstream 84bp
chr2 128184754 128184754 1 + C T UCEC 128184754 + 128184734 128184774 41 CCCCTCCTGGGTGCTGACAGCGGCCCACTGCATGGATGAGT CCCCTCCTGGGTGCTGACAGTGGCCCACTGCATGGATGAGT Direct Loss 1 0.34937657678075 1 0.461286008358002 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128184754 chr2:128184754 nonsynonymous SNV 0.989 3 21 hm5C_associated_SNPs_2072 0 0 1 0 2 PROC chr2:128184681 3'AG 128184681 Downstream 74bp
chr2 128184754 128184754 1 + C T UCEC 128184754 + 128184734 128184774 41 CCCCTCCTGGGTGCTGACAGCGGCCCACTGCATGGATGAGT CCCCTCCTGGGTGCTGACAGTGGCCCACTGCATGGATGAGT Direct Loss 1 0.34937657678075 1 0.461286008358002 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128184754 chr2:128184754 nonsynonymous SNV 0.989 3 21 hm5C_associated_SNPs_2072 0 0 1 0 2 PROC chr2:128184798 5'GT 128184798 Upstream 45bp
chr17 41177463 41177463 1 + C T UCEC 41177463 + 41177443 41177483 41 TTCGCCAAGGACGCCTATCCCGGGGTGAGGGACCTGCGTCT TTCGCCAAGGACGCCTATCCTGGGGTGAGGGACCTGCGTCT Direct Loss 1 0.946796844512902 1 0.859970808029175 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RND2 ENSG00000108830 CDS Human protein_coding chr17:41177463 chr17:41177463 synonymous SNV . 0 21 hm5C_associated_SNPs_2073 0 0 0 0 1 RND2 chr17:41177466 5'GT 41177466 Upstream 4bp
chr11 125513701 125513701 1 + C T UCEC 125513701 + 125513681 125513721 41 TTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGTG TTTTAGGGGCAAAAAGGCCCTGAGTCACTTCAGGTGGTGTG Direct Loss 1 0.436413788052167 1 0.214854538440704 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513701 chr11:125513701 stopgain 0.996 0 21 hm5C_associated_SNPs_2074 0 0 1 3 2 CHEK1 chr11:125513687 3'AG 125513687 Downstream 15bp
chr11 125513701 125513701 1 + C T UCEC 125513701 + 125513681 125513721 41 TTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGTG TTTTAGGGGCAAAAAGGCCCTGAGTCACTTCAGGTGGTGTG Direct Loss 1 0.436413788052167 1 0.214854538440704 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513701 chr11:125513701 stopgain 0.996 0 21 hm5C_associated_SNPs_2074 0 0 1 3 2 CHEK1 chr11:125513795 5'GT 125513795 Upstream 95bp
chr17 60766960 60766960 1 + C T UCEC 60766960 + 60766940 60766980 41 CCTACCTCAACGGCACCTTCCGGCTGCTTCAGAAGCCGCTG CCTACCTCAACGGCACCTTCTGGCTGCTTCAGAAGCCGCTG Direct Loss 1 0.436823278264542 1 0.440544247627258 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60766960 chr17:60766960 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_2075 0 0 0 0 1 MRC2 chr17:60766883 3'AG 60766883 Downstream 78bp
chr19 39013755 39013755 1 + C T UCEC 39013755 + 39013735 39013775 41 ATCTACTGGTCCAAGTCCCACGTGAGTGCCCACCCCAACCG ATCTACTGGTCCAAGTCCCATGTGAGTGCCCACCCCAACCG Direct Loss 1 0.397218589652944 1 0.64806592464447 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RYR1 ENSG00000196218 CDS Human protein_coding chr19:39013755 chr19:39013755 synonymous SNV . 0 21 hm5C_associated_SNPs_2076 0 0 0 0 2 RYR1 chr19:39013668 3'AG 39013668 Downstream 88bp
chr19 39013755 39013755 1 + C T UCEC 39013755 + 39013735 39013775 41 ATCTACTGGTCCAAGTCCCACGTGAGTGCCCACCCCAACCG ATCTACTGGTCCAAGTCCCATGTGAGTGCCCACCCCAACCG Direct Loss 1 0.397218589652944 1 0.64806592464447 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RYR1 ENSG00000196218 CDS Human protein_coding chr19:39013755 chr19:39013755 synonymous SNV . 0 21 hm5C_associated_SNPs_2076 0 0 0 0 2 RYR1 chr19:39013755 5'GT 39013755 Upstream 1bp
chr1 230384969 230384969 1 + C T UCEC 230384969 + 230384949 230384989 41 ATTCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCC ATTCAAGTGGGATTACATGATGCCTGAGCAGAGAAGGTCCC Direct Loss 1 0.524628445646226 1 0.144441783428192 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384969 chr1:230384969 nonsynonymous SNV 0.990 3 21 hm5C_associated_SNPs_2079 0 0 1 0 2 GALNT2 chr1:230384930 3'AG 230384930 Downstream 40bp
chr1 230384969 230384969 1 + C T UCEC 230384969 + 230384949 230384989 41 ATTCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCC ATTCAAGTGGGATTACATGATGCCTGAGCAGAGAAGGTCCC Direct Loss 1 0.524628445646226 1 0.144441783428192 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384969 chr1:230384969 nonsynonymous SNV 0.990 3 21 hm5C_associated_SNPs_2079 0 0 1 0 2 GALNT2 chr1:230385017 5'GT 230385017 Upstream 49bp
chr7 79842035 79842035 1 + C T UCEC 79842035 + 79842015 79842055 41 ATTTTTTTCTATTACAGAACCGAATGCATGAAAGCATGAAA ATTTTTTTCTATTACAGAACTGAATGCATGAAAGCATGAAA Direct Loss 1 0.182131609750328 1 0.134767651557922 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79842035 chr7:79842035 stopgain 0.998 1 21 hm5C_associated_SNPs_2081 0 0 0 0 1 GNAI1 chr7:79842032 3'AG 79842032 Downstream 4bp
chr17 4859438 4859438 1 + C T UCEC 4859438 + 4859418 4859458 41 GGTGACCGAATCGATCCAGGCGTGAGTGCCTCCTGACCCTG GGTGACCGAATCGATCCAGGTGTGAGTGCCTCCTGACCCTG Direct Loss 1 0.868638489702663 1 0.154826253652573 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859438 chr17:4859438 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_2083 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 77bp
chr17 4859438 4859438 1 + C T UCEC 4859438 + 4859418 4859458 41 GGTGACCGAATCGATCCAGGCGTGAGTGCCTCCTGACCCTG GGTGACCGAATCGATCCAGGTGTGAGTGCCTCCTGACCCTG Direct Loss 1 0.868638489702663 1 0.154826253652573 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859438 chr17:4859438 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_2083 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 1bp
chr2 54872430 54872430 1 + C T UCEC 54872430 + 54872410 54872450 41 GCTCCAAAGCCAAGCCCAGGCCCTGAGTCAGGAAGGGAAGA GCTCCAAAGCCAAGCCCAGGTCCTGAGTCAGGAAGGGAAGA Direct Loss 1 0.0915560221993155 1 0.102530270814896 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872430 chr2:54872430 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_2084 0 0 1 0 1 SPTBN1 chr2:54872366 3'AG 54872366 Downstream 65bp
chr21 47805872 47805872 1 + C T UCEC 47805872 + 47805852 47805892 41 CTCCTCTCCATGCTCAAGGCCGACGTCAACCTGTCCCACAG CTCCTCTCCATGCTCAAGGCTGACGTCAACCTGTCCCACAG Direct Loss 1 0.296585473632435 1 0.100724905729294 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47805872 chr21:47805872 synonymous SNV . 0 21 hm5C_associated_SNPs_2085 0 0 0 0 1 PCNT chr21:47805898 5'GT 47805898 Upstream 27bp
chr17 49247315 49247315 1 + C T UCEC 49247315 + 49247295 49247335 41 GAGGTCTGGGAGGGGCTGAACGTGGTGAAGACAGGCCGAGT GAGGTCTGGGAGGGGCTGAATGTGGTGAAGACAGGCCGAGT Direct Loss 1 0.617547385681838 1 0.679262340068817 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49247315 chr17:49247315 synonymous SNV . 0 21 hm5C_associated_SNPs_2086 0 0 1 0 2 NME1-NME2;NME2 chr17:49247298 3'AG 49247298 Downstream 18bp
chr17 49247315 49247315 1 + C T UCEC 49247315 + 49247295 49247335 41 GAGGTCTGGGAGGGGCTGAACGTGGTGAAGACAGGCCGAGT GAGGTCTGGGAGGGGCTGAATGTGGTGAAGACAGGCCGAGT Direct Loss 1 0.617547385681838 1 0.679262340068817 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49247315 chr17:49247315 synonymous SNV . 0 21 hm5C_associated_SNPs_2086 0 0 1 0 2 NME1-NME2;NME2 chr17:49247410 5'GT 49247410 Upstream 96bp
chr11 63606987 63606987 1 + C T UCEC 63606987 + 63606967 63607007 41 GATACCGGCGCCATGTCCAGCGCTCGGACCCCCCTACCCAC GATACCGGCGCCATGTCCAGTGCTCGGACCCCCCTACCCAC Direct Loss 1 0.214299635280198 1 0.586466610431671 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK2 ENSG00000072518 CDS Human protein_coding chr11:63606987 chr11:63606987 synonymous SNV . 0 21 hm5C_associated_SNPs_2087 0 0 0 0 1 MARK2 chr11:63607032 5'GT 63607032 Upstream 46bp
chr1 164790815 164790815 1 + C T UCEC 164790815 + 164790795 164790835 41 ATCAGCCAGACAGGAGGATACAGTGATGGACTCGCAGCCAG ATCAGCCAGACAGGAGGATATAGTGATGGACTCGCAGCCAG Direct Loss 1 0.699468622895908 1 0.333459079265594 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164790815 chr1:164790815 stopgain 1.000 0 21 hm5C_associated_SNPs_2088 0 0 1 0 1 PBX1 chr1:164790774 3'AG 164790774 Downstream 42bp
chr19 50001175 50001175 1 + C T UCEC 50001175 + 50001155 50001195 41 GATCGGCCCCCGCTCCTAGGCGTGGTGACCAAGATGAAGAT GATCGGCCCCCGCTCCTAGGTGTGGTGACCAAGATGAAGAT Direct Loss 1 0.576858181691341 1 0.389453232288361 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS11 ENSG00000142534 CDS Human protein_coding chr19:50001175 chr19:50001175 nonsynonymous SNV 0.506 0 21 hm5C_associated_SNPs_2091 0 0 1 0 1 RPS11 chr19:50001174 3'AG 50001174 Downstream 2bp
chr2 200824514 200824514 1 + C A UCEC 200824514 + 200824494 200824534 41 AGAAAAGGTTACTTCACTACCTGACAACCATAAAAATGCCC AGAAAAGGTTACTTCACTACATGACAACCATAAAAATGCCC Direct Loss 1 0.210432537614029 1 0.1236512362957 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200824514 chr2:200824514 nonsynonymous SNV 0.993 2 21 hm5C_associated_SNPs_2092 0 0 1 0 2 MAIP1 chr2:200824477 3'AG 200824477 Downstream 38bp
chr2 200824514 200824514 1 + C A UCEC 200824514 + 200824494 200824534 41 AGAAAAGGTTACTTCACTACCTGACAACCATAAAAATGCCC AGAAAAGGTTACTTCACTACATGACAACCATAAAAATGCCC Direct Loss 1 0.210432537614029 1 0.1236512362957 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200824514 chr2:200824514 nonsynonymous SNV 0.993 2 21 hm5C_associated_SNPs_2092 0 0 1 0 2 MAIP1 chr2:200824603 5'GT 200824603 Upstream 90bp
chr7 6057450 6057450 1 + C T UCEC 6057450 + 6057430 6057470 41 TTGGTCTTTCCCCAGGATTACGGGGCGCTGAAAGACATCGT TTGGTCTTTCCCCAGGATTATGGGGCGCTGAAAGACATCGT Direct Loss 1 0.803870208446573 1 0.796651005744934 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6057450 chr7:6057450 synonymous SNV . 0 21 hm5C_associated_SNPs_2093 0 0 1 0 1 AIMP2 chr7:6057445 3'AG 6057445 Downstream 6bp
chr19 1041933 1041933 1 + C T UCEC 1041933 + 1041913 1041953 41 TTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGCCTGAG TTTCCGCAGCTGACACCGGGTGAGGAGCCCGGGCGCCTGAG Direct Loss 1 0.499980351896149 1 0.743377983570099 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041933 chr19:1041933 synonymous SNV . 0 21 hm5C_associated_SNPs_2096 0 0 0 0 1 ABCA7 chr19:1041971 5'GT 1041971 Upstream 39bp
chrX 41089043 41089043 1 + C T UCEC 41089043 + 41089023 41089063 41 TCCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAG TCCAGAGGAGGTAAAAAAAGTCACCAGTGTGCAGCAGATAG Direct Loss 1 0.0550115444568947 1 0.184179663658142 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089043 chrX:41089043 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_2100 0 0 0 0 1 USP9X chrX:41089080 5'GT 41089080 Upstream 38bp
chr5 134099691 134099691 1 + C T UCEC 134099691 + 134099671 134099711 41 GTAAACGTGGAGATGACAGACGGTCTAGAAGTAGAGATAGA GTAAACGTGGAGATGACAGATGGTCTAGAAGTAGAGATAGA Direct Loss 1 0.365616435256815 1 0.409069508314133 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DDX46 ENSG00000145833 CDS Human protein_coding chr5:134099691 chr5:134099691 nonsynonymous SNV 0.990 4 21 hm5C_associated_SNPs_2101 0 0 1 0 2 DDX46 chr5:134099594 3'AG 134099594 Downstream 98bp
chr5 134099691 134099691 1 + C T UCEC 134099691 + 134099671 134099711 41 GTAAACGTGGAGATGACAGACGGTCTAGAAGTAGAGATAGA GTAAACGTGGAGATGACAGATGGTCTAGAAGTAGAGATAGA Direct Loss 1 0.365616435256815 1 0.409069508314133 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DDX46 ENSG00000145833 CDS Human protein_coding chr5:134099691 chr5:134099691 nonsynonymous SNV 0.990 4 21 hm5C_associated_SNPs_2101 0 0 1 0 2 DDX46 chr5:134099782 5'GT 134099782 Upstream 92bp
chr19 1453536 1453536 1 + C T UCS 1453536 + 1453516 1453556 41 GGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCTT GGCAGCCCAGTACACGGCTCTGGGCCCTCCAAGGACAGCTT Direct Loss 1 0.203064060078956 1 0.706985592842102 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453536 chr19:1453536 synonymous SNV . 0 21 hm5C_associated_SNPs_2103 0 0 0 0 1 APC2 chr19:1453610 5'GT 1453610 Upstream 75bp
chr1 198231762 198231762 1 + C A UCS 198231762 + 198231742 198231782 41 GCATCAAAGAAATAGATCTTCTTAAGGTAATTAATGAACTG GCATCAAAGAAATAGATCTTATTAAGGTAATTAATGAACTG Direct Loss 1 0.454802937228844 1 0.145426720380783 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231762 chr1:198231762 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_2104 0 0 0 0 2 NEK7 chr1:198231705 3'AG 198231705 Downstream 58bp
chr1 198231762 198231762 1 + C A UCS 198231762 + 198231742 198231782 41 GCATCAAAGAAATAGATCTTCTTAAGGTAATTAATGAACTG GCATCAAAGAAATAGATCTTATTAAGGTAATTAATGAACTG Direct Loss 1 0.454802937228844 1 0.145426720380783 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231762 chr1:198231762 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_2104 0 0 0 0 2 NEK7 chr1:198231767 5'GT 198231767 Upstream 6bp
chr7 2395011 2395011 1 + C G UCS 2395011 + 2394991 2395031 41 CGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAGGACT CGGCGACGCGGACGAGCCCTGCTTCAGCGACCCCGAGGACT Direct Loss 1 0.0769799572226723 1 0.162194699048996 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395011 chr7:2395011 nonsynonymous SNV 0.982 3 21 hm5C_associated_SNPs_2105 0 0 1 0 1 EIF3B chr7:2395055 5'GT 2395055 Upstream 45bp
chr3 127335929 127335929 1 + C T UCS 127335929 + 127335909 127335949 41 GGGCCCTGGTTCTGGCTGACCGAGGAGTGTGTCTCATTGAT GGGCCCTGGTTCTGGCTGACTGAGGAGTGTGTCTCATTGAT Direct Loss 1 0.71185381364921 1 0.67714923620224 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127335929 chr3:127335929 stopgain 0.942 1 21 hm5C_associated_SNPs_2106 0 0 1 0 1 MCM2 chr3:127335961 5'GT 127335961 Upstream 33bp
chr5 54641006 54641006 1 + C T LAML 54641006 + 54640986 54641026 41 CCAAAGGAGACCAGAAAGGGCGGAAAGGAGGAACAAAAGGT CCAAAGGAGACCAGAAAGGGTGGAAAGGAGGAACAAAAGGT Direct Loss 1 0.682458604871289 1 0.435689508914948 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54641006 chr5:54641006 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_2108 0 0 1 0 1 SKIV2L2 chr5:54641024 5'GT 54641024 Upstream 19bp
chr4 113298991 113298991 1 + C A LAML 113298991 + 113298971 113299011 41 AGTGCAAGCAAGTGCTGGATCAGCTCTTGTTGGAAGCGCCA AGTGCAAGCAAGTGCTGGATAAGCTCTTGTTGGAAGCGCCA Direct Loss 1 0.592313044590591 1 0.161133825778961 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113298991 chr4:113298991 nonsynonymous SNV 0.951 0 21 hm5C_associated_SNPs_2109 0 0 0 1 1 ALPK1 chr4:113299054 5'GT 113299054 Upstream 64bp
chr8 22054839 22054839 1 + C T LAML 22054839 + 22054819 22054859 41 TTCTGTGGTTCTGAGAAGCCCGAGGTCATCACCTCCCAGTA TTCTGTGGTTCTGAGAAGCCTGAGGTCATCACCTCCCAGTA Direct Loss 1 0.736107453093115 1 0.682650566101074 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22054839 chr8:22054839 synonymous SNV . 0 21 hm5C_associated_SNPs_2110 0 0 1 0 2 BMP1 chr8:22054753 3'AG 22054753 Downstream 87bp
chr8 22054839 22054839 1 + C T LAML 22054839 + 22054819 22054859 41 TTCTGTGGTTCTGAGAAGCCCGAGGTCATCACCTCCCAGTA TTCTGTGGTTCTGAGAAGCCTGAGGTCATCACCTCCCAGTA Direct Loss 1 0.736107453093115 1 0.682650566101074 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22054839 chr8:22054839 synonymous SNV . 0 21 hm5C_associated_SNPs_2110 0 0 1 0 2 BMP1 chr8:22054933 5'GT 22054933 Upstream 95bp
chr17 46128919 46128919 1 + C T LAML 46128919 + 46128899 46128939 41 TGCGAGAAAGCGAAACGGAGCAGGGATTCGGTGAAGATTTG TGCGAGAAAGCGAAACGGAGTAGGGATTCGGTGAAGATTTG Direct Loss 1 0.665461468443482 1 0.609165251255035 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128919 chr17:46128919 stopgain 1.000 0 21 hm5C_associated_SNPs_2112 0 0 1 0 1 NFE2L1 chr17:46128990 5'GT 46128990 Upstream 72bp
chr20 31374362 31374362 1 + C T LAML 31374362 + 31374342 31374382 41 GGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCGG GGGAGAGGCACAGGCCTTCCTCACGTTCCACCCGAGGCCGG Direct Loss 1 0.641169266787642 1 0.272985816001892 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374362 chr20:31374362 nonsynonymous SNV 0.192 1 21 hm5C_associated_SNPs_2113 0 0 0 0 1 DNMT3B chr20:31374308 3'AG 31374308 Downstream 55bp
chr4 26407834 26407834 1 + C T LAML 26407834 + 26407814 26407854 41 ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCAT ATTTAAAAGAGCGAGGGGATTAAACAGTACTTATTCTTCAT Direct Loss 1 0.33094474087806 1 0.231382727622986 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBPJ ENSG00000168214 CDS Human protein_coding chr4:26407834 chr4:26407834 stopgain 1.000 1 21 hm5C_associated_SNPs_2114 0 0 1 0 2 RBPJ chr4:26407797 3'AG 26407797 Downstream 38bp
chr4 26407834 26407834 1 + C T LAML 26407834 + 26407814 26407854 41 ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCAT ATTTAAAAGAGCGAGGGGATTAAACAGTACTTATTCTTCAT Direct Loss 1 0.33094474087806 1 0.231382727622986 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBPJ ENSG00000168214 CDS Human protein_coding chr4:26407834 chr4:26407834 stopgain 1.000 1 21 hm5C_associated_SNPs_2114 0 0 1 0 2 RBPJ chr4:26407892 5'GT 26407892 Upstream 59bp
chr1 874665 874665 1 + G A rs74047413 874684 + 874664 874704 41 TGCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGAC TACTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGAC < 41bp 1 0.523708190718229 1 0.302308797836304 experiment 0.952583618563543 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874684 chr1:874665 synonymous SNV . 0 2 hm5C_associated_SNPs_2115 0 0 0 0 1 SAMD11 chr1:874652 3'AG 874652 Downstream 14bp
chr1 874665 874665 1 + G A rs74047413 874685 + 874665 874705 41 GCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGACC ACTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGACC < 41bp 1 0.561172960895723 1 0.555486559867859 experiment 0.877654078208554 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874685 chr1:874665 synonymous SNV . 0 1 hm5C_associated_SNPs_2116 0 0 0 0 1 SAMD11 chr1:874652 3'AG 874652 Downstream 14bp
chr1 874762 874762 1 + C T rs139437968 874779 + 874759 874799 41 CAGCGCCTCTACCACCTGGGCCTCCCCAGCCACGGTGAGGA CAGTGCCTCTACCACCTGGGCCTCCCCAGCCACGGTGAGGA < 41bp 1 0.0776400301189291 1 0.0551945269107819 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874779 chr1:874762 nonsynonymous SNV 0.960 4 4 hm5C_associated_SNPs_2117 0 0 0 0 2 SAMD11 chr1:874792 5'GT 874792 Upstream 31bp
chr1 874762 874762 1 + C T rs139437968 874779 + 874759 874799 41 CAGCGCCTCTACCACCTGGGCCTCCCCAGCCACGGTGAGGA CAGTGCCTCTACCACCTGGGCCTCCCCAGCCACGGTGAGGA < 41bp 1 0.0776400301189291 1 0.0551945269107819 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874779 chr1:874762 nonsynonymous SNV 0.960 4 4 hm5C_associated_SNPs_2117 0 0 0 0 2 SAMD11 chr1:874840 5'GT 874840 Upstream 79bp
chr1 879317 879317 1 + C T rs7523549 879299 + 879279 879319 41 TCTCTGCAGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGT TCTCTGCAGGTGGCCAGGCGCCTGGGCCGAGTTTTCTATGT < 41bp 1 0.536399868217293 1 0.481318861246109 experiment 0.927200263565414 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879299 chr1:879317 synonymous SNV . 0 39 hm5C_associated_SNPs_2118 0 0 1 0 2 SAMD11 chr1:879273 3'AG 879273 Downstream 45bp
chr1 879317 879317 1 + C T rs7523549 879299 + 879279 879319 41 TCTCTGCAGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGT TCTCTGCAGGTGGCCAGGCGCCTGGGCCGAGTTTTCTATGT < 41bp 1 0.536399868217293 1 0.481318861246109 experiment 0.927200263565414 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879299 chr1:879317 synonymous SNV . 0 39 hm5C_associated_SNPs_2118 0 0 1 0 2 SAMD11 chr1:879288 3'AG 879288 Downstream 30bp
chr1 879317 879317 1 + C T rs7523549 879305 + 879285 879325 41 CAGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGGCCAG CAGGTGGCCAGGCGCCTGGGCCGAGTTTTCTATGTGGCCAG < 41bp 1 0.538402312054196 1 0.10447034239769 experiment 0.923195375891608 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879305 chr1:879317 synonymous SNV . 0 33 hm5C_associated_SNPs_2119 0 0 1 0 2 SAMD11 chr1:879273 3'AG 879273 Downstream 45bp
chr1 879317 879317 1 + C T rs7523549 879305 + 879285 879325 41 CAGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGGCCAG CAGGTGGCCAGGCGCCTGGGCCGAGTTTTCTATGTGGCCAG < 41bp 1 0.538402312054196 1 0.10447034239769 experiment 0.923195375891608 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879305 chr1:879317 synonymous SNV . 0 33 hm5C_associated_SNPs_2119 0 0 1 0 2 SAMD11 chr1:879288 3'AG 879288 Downstream 30bp
chr1 879317 879317 1 + C T rs7523549 879306 + 879286 879326 41 AGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGGCCAGC AGGTGGCCAGGCGCCTGGGCCGAGTTTTCTATGTGGCCAGC < 41bp 1 0.724058155465399 1 0.15086030960083 experiment 0.551883689069202 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879306 chr1:879317 synonymous SNV . 0 32 hm5C_associated_SNPs_2120 0 0 1 0 2 SAMD11 chr1:879273 3'AG 879273 Downstream 45bp
chr1 879317 879317 1 + C T rs7523549 879306 + 879286 879326 41 AGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGGCCAGC AGGTGGCCAGGCGCCTGGGCCGAGTTTTCTATGTGGCCAGC < 41bp 1 0.724058155465399 1 0.15086030960083 experiment 0.551883689069202 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879306 chr1:879317 synonymous SNV . 0 32 hm5C_associated_SNPs_2120 0 0 1 0 2 SAMD11 chr1:879288 3'AG 879288 Downstream 30bp
chr1 879326 879326 1 + C T rs111371881 879306 + 879286 879326 41 AGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGGCCAGC AGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGGCCAGT < 41bp 1 0.667727497515428 1 0.160157889127731 experiment 0.664545004969145 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879306 chr1:879326 synonymous SNV . 0 41 hm5C_associated_SNPs_2121 0 0 0 0 2 SAMD11 chr1:879273 3'AG 879273 Downstream 54bp
chr1 879326 879326 1 + C T rs111371881 879306 + 879286 879326 41 AGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGGCCAGC AGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGGCCAGT < 41bp 1 0.667727497515428 1 0.160157889127731 experiment 0.664545004969145 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879306 chr1:879326 synonymous SNV . 0 41 hm5C_associated_SNPs_2121 0 0 0 0 2 SAMD11 chr1:879288 3'AG 879288 Downstream 39bp
chr1 906471 906471 1 + C T rs561397298 906462 + 906442 906482 41 ACCTCCTCCTCACAGGGGTCCTGCGGAGACGAACTCCCCTG ACCTCCTCCTCACAGGGGTCCTGCGGAGATGAACTCCCCTG < 41bp 1 0.57672326865388 1 0.41010707616806 experiment 0.84655346269224 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:906462 chr1:906471 synonymous SNV . 0 30 hm5C_associated_SNPs_2123 0 0 0 0 1 PLEKHN1 chr1:906457 3'AG 906457 Downstream 15bp
chr1 906472 906472 1 + G A rs201680039 906462 + 906442 906482 41 ACCTCCTCCTCACAGGGGTCCTGCGGAGACGAACTCCCCTG ACCTCCTCCTCACAGGGGTCCTGCGGAGACAAACTCCCCTG < 41bp 1 0.648676818495904 1 0.301619112491608 experiment 0.702646363008192 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:906462 chr1:906472 nonsynonymous SNV 0.002 0 31 hm5C_associated_SNPs_2124 0 0 0 0 1 PLEKHN1 chr1:906457 3'AG 906457 Downstream 16bp
chr1 977027 977027 1 + G A rs563020089 977045 + 977025 977065 41 GGGGCCGCCCGGGGTCTCCTCCTGCAGAAAGTGCGCTCCGG GGAGCCGCCCGGGGTCTCCTCCTGCAGAAAGTGCGCTCCGG < 41bp 1 0.104899824576402 1 0.444766014814377 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:977045 chr1:977027 synonymous SNV . 0 3 hm5C_associated_SNPs_2126 0 0 1 0 1 AGRN chr1:977082 5'GT 977082 Upstream 56bp
chr1 977028 977028 1 + G T rs138031468 977045 + 977025 977065 41 GGGGCCGCCCGGGGTCTCCTCCTGCAGAAAGTGCGCTCCGG GGGTCCGCCCGGGGTCTCCTCCTGCAGAAAGTGCGCTCCGG < 41bp 1 0.105624973364276 1 0.386937767267227 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:977045 chr1:977028 nonsynonymous SNV 0.003 1 4 hm5C_associated_SNPs_2127 2 0 1 0 1 AGRN chr1:977082 5'GT 977082 Upstream 55bp
chr1 978668 978668 1 + G A rs147346337 978683 + 978663 978703 41 GCGACGTGTGCTGTGAAGAACGGGCAGGCAGCGTGTGAATG GCGACATGTGCTGTGAAGAACGGGCAGGCAGCGTGTGAATG < 41bp 1 0.374486876527865 1 0.1955426633358 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:978683 chr1:978668 synonymous SNV . 0 6 hm5C_associated_SNPs_2128 1 0 1 0 1 AGRN chr1:978619 3'AG 978619 Downstream 50bp
chr1 984257 984257 1 + C T rs200170414 984264 + 984244 984284 41 CAGTGCTTGGCGCCCCTGTGCCGGCCTTCGAGGGCCGCTCC CAGTGCTTGGCGCTCCTGTGCCGGCCTTCGAGGGCCGCTCC < 41bp 1 0.252973089649904 1 0.47593280673027 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984264 chr1:984257 synonymous SNV . 0 14 hm5C_associated_SNPs_2138 1 0 1 0 1 AGRN chr1:984247 3'AG 984247 Downstream 11bp
chr1 984272 984272 1 + C G rs368555478 984264 + 984244 984284 41 CAGTGCTTGGCGCCCCTGTGCCGGCCTTCGAGGGCCGCTCC CAGTGCTTGGCGCCCCTGTGCCGGCCTTGGAGGGCCGCTCC < 41bp 1 0.276294369418773 1 0.561966240406036 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984264 chr1:984272 nonsynonymous SNV 0.030 4 29 hm5C_associated_SNPs_2139 0 0 1 0 1 AGRN chr1:984247 3'AG 984247 Downstream 26bp
chr1 984280 984280 1 + G A rs183686622 984264 + 984244 984284 41 CAGTGCTTGGCGCCCCTGTGCCGGCCTTCGAGGGCCGCTCC CAGTGCTTGGCGCCCCTGTGCCGGCCTTCGAGGGCCACTCC < 41bp 1 0.237115583535867 1 0.46777668595314 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984264 chr1:984280 nonsynonymous SNV 0.080 0 37 hm5C_associated_SNPs_2140 0 0 1 0 1 AGRN chr1:984247 3'AG 984247 Downstream 34bp
chr1 984280 984280 1 + G A rs183686622 984297 + 984277 984317 41 GCCGCTCCTTCCTGGCCTTCCCCACTCTCCGCGCCTACCAC GCCACTCCTTCCTGGCCTTCCCCACTCTCCGCGCCTACCAC < 41bp 1 0.105263416241006 1 0.169745862483978 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984297 chr1:984280 nonsynonymous SNV 0.080 0 4 hm5C_associated_SNPs_2141 0 0 1 0 1 AGRN chr1:984247 3'AG 984247 Downstream 34bp
chr1 984302 984302 1 + T C rs9442391 984297 + 984277 984317 41 GCCGCTCCTTCCTGGCCTTCCCCACTCTCCGCGCCTACCAC GCCGCTCCTTCCTGGCCTTCCCCACCCTCCGCGCCTACCAC < 41bp 1 0.0876106532658748 1 0.344931155443192 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984297 chr1:984302 synonymous SNV . 0 26 hm5C_associated_SNPs_2142 1 0 1 0 1 AGRN chr1:984247 3'AG 984247 Downstream 56bp
chr1 1246360 1246360 1 + T C rs149289867 1246369 + 1246349 1246389 41 GTGAAGACGATTCTGGAGAGCCAAGATCCCCTGGGCAAGCA GTGAAGACGATCCTGGAGAGCCAAGATCCCCTGGGCAAGCA < 41bp 1 0.398863666380352 1 0.252484798431396 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PUSL1 ENSG00000169972 CDS Human protein_coding chr1:1246369 chr1:1246360 synonymous SNV . 0 12 hm5C_associated_SNPs_2145 0 0 1 0 2 PUSL1 chr1:1246289 3'AG 1246289 Downstream 72bp
chr1 1246360 1246360 1 + T C rs149289867 1246369 + 1246349 1246389 41 GTGAAGACGATTCTGGAGAGCCAAGATCCCCTGGGCAAGCA GTGAAGACGATCCTGGAGAGCCAAGATCCCCTGGGCAAGCA < 41bp 1 0.398863666380352 1 0.252484798431396 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PUSL1 ENSG00000169972 CDS Human protein_coding chr1:1246369 chr1:1246360 synonymous SNV . 0 12 hm5C_associated_SNPs_2145 0 0 1 0 2 PUSL1 chr1:1246451 5'GT 1246451 Upstream 92bp
chr1 1246373 1246373 1 + G A rs142154083 1246369 + 1246349 1246389 41 GTGAAGACGATTCTGGAGAGCCAAGATCCCCTGGGCAAGCA GTGAAGACGATTCTGGAGAGCCAAAATCCCCTGGGCAAGCA < 41bp 1 0.471843439938908 1 0.219331979751587 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PUSL1 ENSG00000169972 CDS Human protein_coding chr1:1246369 chr1:1246373 nonsynonymous SNV 0.162 2 25 hm5C_associated_SNPs_2146 0 0 1 0 2 PUSL1 chr1:1246289 3'AG 1246289 Downstream 85bp
chr1 1246373 1246373 1 + G A rs142154083 1246369 + 1246349 1246389 41 GTGAAGACGATTCTGGAGAGCCAAGATCCCCTGGGCAAGCA GTGAAGACGATTCTGGAGAGCCAAAATCCCCTGGGCAAGCA < 41bp 1 0.471843439938908 1 0.219331979751587 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PUSL1 ENSG00000169972 CDS Human protein_coding chr1:1246369 chr1:1246373 nonsynonymous SNV 0.162 2 25 hm5C_associated_SNPs_2146 0 0 1 0 2 PUSL1 chr1:1246451 5'GT 1246451 Upstream 79bp
chr1 1425667 1425667 1 + T C rs61737193 1425666 + 1425646 1425686 41 GGTCCTGGCCAGCAATCTGCCTGAGCAGTTCGACTGTGCCA GGTCCTGGCCAGCAATCTGCCCGAGCAGTTCGACTGTGCCA < 41bp 1 0.344981579822863 1 0.42368295788765 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1425666 chr1:1425667 synonymous SNV . 0 22 hm5C_associated_SNPs_2155 0 0 1 0 1 ATAD3B chr1:1425637 3'AG 1425637 Downstream 31bp
chr1 1425676 1425676 1 + C G rs61737191 1425666 + 1425646 1425686 41 GGTCCTGGCCAGCAATCTGCCTGAGCAGTTCGACTGTGCCA GGTCCTGGCCAGCAATCTGCCTGAGCAGTTGGACTGTGCCA < 41bp 1 0.568681519501866 1 0.29867559671402 experiment 0.862636960996269 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1425666 chr1:1425676 nonsynonymous SNV 0.000 3 31 hm5C_associated_SNPs_2156 0 0 1 0 1 ATAD3B chr1:1425637 3'AG 1425637 Downstream 40bp
chr1 1447816 1447816 1 + G A rs564012773 1447819 + 1447799 1447839 41 GACCCCACCGGCCTGGAGCGCGCCGCCAAGGCGGCGCGCGA GACCCCACCGGCCTGGAACGCGCCGCCAAGGCGGCGCGCGA < 41bp 1 0.696811590446596 1 0.862833023071289 experiment 0.606376819106808 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1447819 chr1:1447816 synonymous SNV . 0 18 hm5C_associated_SNPs_2159 0 0 0 0 1 ATAD3A chr1:1447853 5'GT 1447853 Upstream 38bp
chr1 1447816 1447816 1 + G A rs564012773 1447821 + 1447801 1447841 41 CCCCACCGGCCTGGAGCGCGCCGCCAAGGCGGCGCGCGAGC CCCCACCGGCCTGGAACGCGCCGCCAAGGCGGCGCGCGAGC < 41bp 1 0.291927100933397 1 0.288122743368149 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1447821 chr1:1447816 synonymous SNV . 0 16 hm5C_associated_SNPs_2160 0 0 0 0 1 ATAD3A chr1:1447853 5'GT 1447853 Upstream 38bp
chr1 1447816 1447816 1 + G A rs564012773 1447822 + 1447802 1447842 41 CCCACCGGCCTGGAGCGCGCCGCCAAGGCGGCGCGCGAGCT CCCACCGGCCTGGAACGCGCCGCCAAGGCGGCGCGCGAGCT < 41bp 1 0.678636145561736 1 0.843615770339966 experiment 0.642727708876528 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1447822 chr1:1447816 synonymous SNV . 0 15 hm5C_associated_SNPs_2161 0 0 0 0 1 ATAD3A chr1:1447853 5'GT 1447853 Upstream 38bp
chr1 1564858 1564858 1 + G A rs116670248 1564862 + 1564842 1564882 41 ACGTGGGCGCCGCGCCGGGGCCCGAGGCCGCTGAGTGCCTG ACGTGGGCGCCGCGCCAGGGCCCGAGGCCGCTGAGTGCCTG < 41bp 1 0.748329075641228 1 0.328031659126282 experiment 0.503341848717545 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MIB2 ENSG00000197530 CDS Human protein_coding chr1:1564862 chr1:1564858 synonymous SNV . 0 17 hm5C_associated_SNPs_2169 0 0 1 0 1 MIB2 chr1:1564765 3'AG 1564765 Downstream 94bp
chr1 1564858 1564858 1 + G A rs116670248 1564863 + 1564843 1564883 41 CGTGGGCGCCGCGCCGGGGCCCGAGGCCGCTGAGTGCCTGG CGTGGGCGCCGCGCCAGGGCCCGAGGCCGCTGAGTGCCTGG < 41bp 1 0.464564993072237 1 0.650409162044525 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MIB2 ENSG00000197530 CDS Human protein_coding chr1:1564863 chr1:1564858 synonymous SNV . 0 16 hm5C_associated_SNPs_2170 0 0 1 0 1 MIB2 chr1:1564765 3'AG 1564765 Downstream 94bp
chr1 1564858 1564858 1 + G A rs116670248 1564864 + 1564844 1564884 41 GTGGGCGCCGCGCCGGGGCCCGAGGCCGCTGAGTGCCTGGT GTGGGCGCCGCGCCAGGGCCCGAGGCCGCTGAGTGCCTGGT < 41bp 1 0.597682168768129 1 0.752204895019531 experiment 0.804635662463742 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MIB2 ENSG00000197530 CDS Human protein_coding chr1:1564864 chr1:1564858 synonymous SNV . 0 15 hm5C_associated_SNPs_2171 0 0 1 0 1 MIB2 chr1:1564765 3'AG 1564765 Downstream 94bp
chr1 1564858 1564858 1 + G A rs116670248 1564869 + 1564849 1564889 41 CGCCGCGCCGGGGCCCGAGGCCGCTGAGTGCCTGGTGTGCT CGCCGCGCCAGGGCCCGAGGCCGCTGAGTGCCTGGTGTGCT < 41bp 1 0.222085268859501 1 0.151188313961029 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MIB2 ENSG00000197530 CDS Human protein_coding chr1:1564869 chr1:1564858 synonymous SNV . 0 10 hm5C_associated_SNPs_2172 0 0 1 0 1 MIB2 chr1:1564765 3'AG 1564765 Downstream 94bp
chr1 1564858 1564858 1 + G A rs116670248 1564870 + 1564850 1564890 41 GCCGCGCCGGGGCCCGAGGCCGCTGAGTGCCTGGTGTGCTC GCCGCGCCAGGGCCCGAGGCCGCTGAGTGCCTGGTGTGCTC < 41bp 1 0.52722366504779 1 0.422722995281219 experiment 0.945552669904421 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MIB2 ENSG00000197530 CDS Human protein_coding chr1:1564870 chr1:1564858 synonymous SNV . 0 9 hm5C_associated_SNPs_2173 0 0 1 0 1 MIB2 chr1:1564765 3'AG 1564765 Downstream 94bp
chr1 2235784 2235784 1 + C G rs111935632 2235794 + 2235774 2235814 41 CATCCAGCTCCGCCAAGGACCTGGGCTCCCCGGGTGCGCGT CATCCAGCTCGGCCAAGGACCTGGGCTCCCCGGGTGCGCGT < 41bp 1 0.792522311085159 1 0.706808924674988 experiment 0.414955377829683 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SKI ENSG00000157933 CDS Human protein_coding chr1:2235794 chr1:2235784 synonymous SNV . 0 11 hm5C_associated_SNPs_2178 0 0 0 0 1 SKI chr1:2235732 3'AG 2235732 Downstream 53bp
chr1 2421279 2421279 1 + C T rs114931988 2421285 + 2421265 2421305 41 GCTGATGAGATTGACGATGACTGCAAGCTCCTCAATGGGGA GCTGATGAGATTGATGATGACTGCAAGCTCCTCAATGGGGA < 41bp 1 0.748655121495355 1 0.196203917264938 experiment 0.50268975700929 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2421285 chr1:2421279 synonymous SNV . 0 15 hm5C_associated_SNPs_2188 0 0 0 0 2 PLCH2 chr1:2421199 3'AG 2421199 Downstream 81bp
chr1 2421279 2421279 1 + C T rs114931988 2421285 + 2421265 2421305 41 GCTGATGAGATTGACGATGACTGCAAGCTCCTCAATGGGGA GCTGATGAGATTGATGATGACTGCAAGCTCCTCAATGGGGA < 41bp 1 0.748655121495355 1 0.196203917264938 experiment 0.50268975700929 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2421285 chr1:2421279 synonymous SNV . 0 15 hm5C_associated_SNPs_2188 0 0 0 0 2 PLCH2 chr1:2421306 5'GT 2421306 Upstream 28bp
chr1 6271125 6271125 1 + A G rs1052598 6271142 + 6271122 6271162 41 GCCACTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTG GCCGCTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTG < 41bp 1 0.40108826475609 1 0.331417262554169 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF207 ENSG00000158286 CDS Human protein_coding chr1:6271142 chr1:6271125 synonymous SNV . 0 4 hm5C_associated_SNPs_2200 0 0 1 0 2 RNF207 chr1:6271081 3'AG 6271081 Downstream 45bp
chr1 6271125 6271125 1 + A G rs1052598 6271142 + 6271122 6271162 41 GCCACTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTG GCCGCTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTG < 41bp 1 0.40108826475609 1 0.331417262554169 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF207 ENSG00000158286 CDS Human protein_coding chr1:6271142 chr1:6271125 synonymous SNV . 0 4 hm5C_associated_SNPs_2200 0 0 1 0 2 RNF207 chr1:6271178 5'GT 6271178 Upstream 54bp
chr1 11539349 11539349 1 + C A rs571148583 11539368 + 11539348 11539388 41 GCGTGGTGGCCGCCGCCCCCCGACCCTCTGCGCACTCTCTC GAGTGGTGGCCGCCGCCCCCCGACCCTCTGCGCACTCTCTC < 41bp 1 0.413340310949429 1 0.616848587989807 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DISP3 ENSG00000204624 UTR5 Human protein_coding chr1:11539368 chr1:11539349 . . 0 2 hm5C_associated_SNPs_2244 0 0 0 0 1 DISP3 chr1:11539429 5'GT 11539429 Upstream 81bp
chr1 11539363 11539363 1 + C T rs538675628 11539368 + 11539348 11539388 41 GCGTGGTGGCCGCCGCCCCCCGACCCTCTGCGCACTCTCTC GCGTGGTGGCCGCCGTCCCCCGACCCTCTGCGCACTCTCTC < 41bp 1 0.456575787557729 1 0.5869060754776 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DISP3 ENSG00000204624 UTR5 Human protein_coding chr1:11539368 chr1:11539363 . . 0 16 hm5C_associated_SNPs_2245 0 0 0 0 1 DISP3 chr1:11539429 5'GT 11539429 Upstream 67bp
chr1 11897082 11897082 1 + C A rs41275500 11897086 + 11897066 11897106 41 TCCTCACCCGGGCTGGCGAGCAGCGCAAACGGAGCCAGTCC TCCTCACCCGGGCTGGAGAGCAGCGCAAACGGAGCCAGTCC < 41bp 1 0.723973742809497 1 0.733003079891205 experiment 0.552052514381007 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11897086 chr1:11897082 synonymous SNV . 0 17 hm5C_associated_SNPs_2247 0 0 1 0 1 CLCN6 chr1:11897056 3'AG 11897056 Downstream 27bp
chr1 11898624 11898624 1 + C T rs2272802 11898626 + 11898606 11898646 41 CATGAACCCTTCGCCTTTCACCGTCTCGCCCAACACCCACG CATGAACCCTTCGCCTTTTACCGTCTCGCCCAACACCCACG < 41bp 1 0.116441154958224 1 0.0252809226512909 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11898626 chr1:11898624 synonymous SNV . 0 19 hm5C_associated_SNPs_2248 0 0 0 0 2 CLCN6 chr1:11898592 3'AG 11898592 Downstream 33bp
chr1 11898624 11898624 1 + C T rs2272802 11898626 + 11898606 11898646 41 CATGAACCCTTCGCCTTTCACCGTCTCGCCCAACACCCACG CATGAACCCTTCGCCTTTTACCGTCTCGCCCAACACCCACG < 41bp 1 0.116441154958224 1 0.0252809226512909 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11898626 chr1:11898624 synonymous SNV . 0 19 hm5C_associated_SNPs_2248 0 0 0 0 2 CLCN6 chr1:11898717 5'GT 11898717 Upstream 94bp
chr1 12009956 12009956 1 + G A rs7551175 12009955 + 12009935 12009975 41 GAGGATCTGGTCATTCTCTTCGCAGACAGGTAGGTGGGTCA GAGGATCTGGTCATTCTCTTCACAGACAGGTAGGTGGGTCA < 41bp 1 0.502563866326686 1 0.658891916275024 experiment 0.994872267346627 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12009955 chr1:12009956 nonsynonymous SNV 0.911 0 22 hm5C_associated_SNPs_2249 2 0 1 0 1 PLOD1 chr1:12009963 5'GT 12009963 Upstream 8bp
chr1 12042096 12042096 1 + C G rs7538183 12042094 + 12042074 12042114 41 TGAGACAGGACAGAAGAGAACTCAGAATCTTTTTGTCTTTT TGAGACAGGACAGAAGAGAACTGAGAATCTTTTTGTCTTTT < 41bp 1 0.423383180175594 1 0.0976514220237732 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MFN2 ENSG00000116688 UTR5 Human protein_coding chr1:12042094 chr1:12042096 . . 0 23 hm5C_associated_SNPs_2250 0 0 1 0 2 MFN2 chr1:12042027 3'AG 12042027 Downstream 70bp
chr1 12042096 12042096 1 + C G rs7538183 12042094 + 12042074 12042114 41 TGAGACAGGACAGAAGAGAACTCAGAATCTTTTTGTCTTTT TGAGACAGGACAGAAGAGAACTGAGAATCTTTTTGTCTTTT < 41bp 1 0.423383180175594 1 0.0976514220237732 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MFN2 ENSG00000116688 UTR5 Human protein_coding chr1:12042094 chr1:12042096 . . 0 23 hm5C_associated_SNPs_2250 0 0 1 0 2 MFN2 chr1:12042171 5'GT 12042171 Upstream 76bp
chr1 12061533 12061533 1 + G A rs41278630 12061544 + 12061524 12061564 41 TCCCAGGCCGGGGACCGCATCTTCTTTGTGTCTGCTAAGGA TCCCAGGCCAGGGACCGCATCTTCTTTGTGTCTGCTAAGGA < 41bp 1 0.216461225695756 1 0.0878639221191406 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061544 chr1:12061533 nonsynonymous SNV 0.781 2 10 hm5C_associated_SNPs_2251 4 0 1 0 2 MFN2 chr1:12061458 3'AG 12061458 Downstream 76bp
chr1 12061533 12061533 1 + G A rs41278630 12061544 + 12061524 12061564 41 TCCCAGGCCGGGGACCGCATCTTCTTTGTGTCTGCTAAGGA TCCCAGGCCAGGGACCGCATCTTCTTTGTGTCTGCTAAGGA < 41bp 1 0.216461225695756 1 0.0878639221191406 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061544 chr1:12061533 nonsynonymous SNV 0.781 2 10 hm5C_associated_SNPs_2251 4 0 1 0 2 MFN2 chr1:12061611 5'GT 12061611 Upstream 79bp
chr1 12061830 12061830 1 + C T rs141475476 12061838 + 12061818 12061858 41 CCTCCTAGGGGGCGCTCTCGCAGAAGGCTTTCAAGTGAGGA CCTCCTAGGGGGTGCTCTCGCAGAAGGCTTTCAAGTGAGGA < 41bp 1 0.763640993165465 1 0.678593158721924 experiment 0.472718013669069 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061838 chr1:12061830 synonymous SNV . 0 13 hm5C_associated_SNPs_2252 4 0 1 0 2 MFN2 chr1:12061826 3'AG 12061826 Downstream 5bp
chr1 12061830 12061830 1 + C T rs141475476 12061838 + 12061818 12061858 41 CCTCCTAGGGGGCGCTCTCGCAGAAGGCTTTCAAGTGAGGA CCTCCTAGGGGGTGCTCTCGCAGAAGGCTTTCAAGTGAGGA < 41bp 1 0.763640993165465 1 0.678593158721924 experiment 0.472718013669069 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061838 chr1:12061830 synonymous SNV . 0 13 hm5C_associated_SNPs_2252 4 0 1 0 2 MFN2 chr1:12061893 5'GT 12061893 Upstream 64bp
chr1 12079552 12079552 1 + T C rs113851829 12079560 + 12079540 12079580 41 GGCCGAGGCCCCTGGAACGGCTCAGGCGGCTGCGGCTGCTA GGCCGAGGCCCCCGGAACGGCTCAGGCGGCTGCGGCTGCTA < 41bp 1 0.675046731505624 1 0.606323957443237 experiment 0.649906536988752 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MIIP ENSG00000116691 UTR5 Human protein_coding chr1:12079560 chr1:12079552 . . 0 13 hm5C_associated_SNPs_2254 0 0 0 0 1 MIIP chr1:12079609 5'GT 12079609 Upstream 58bp
chr1 12079553 12079553 1 + G C rs571141268 12079560 + 12079540 12079580 41 GGCCGAGGCCCCTGGAACGGCTCAGGCGGCTGCGGCTGCTA GGCCGAGGCCCCTCGAACGGCTCAGGCGGCTGCGGCTGCTA < 41bp 1 0.633500474540628 1 0.535982310771942 experiment 0.732999050918743 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MIIP ENSG00000116691 UTR5 Human protein_coding chr1:12079560 chr1:12079553 . . 0 14 hm5C_associated_SNPs_2255 0 0 0 0 1 MIIP chr1:12079609 5'GT 12079609 Upstream 57bp
chr1 12317052 12317052 1 + C T rs138858983 12317053 + 12317033 12317073 41 CTAATACAAAGCTGCAATACCGGCAAATCATGGAATTCCTC CTAATACAAAGCTGCAATATCGGCAAATCATGGAATTCCTC < 41bp 1 0.293913065778547 1 0.706778764724731 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VPS13D ENSG00000048707 CDS Human protein_coding chr1:12317053 chr1:12317052 synonymous SNV . 0 20 hm5C_associated_SNPs_2260 0 0 1 0 2 VPS13D chr1:12317044 3'AG 12317044 Downstream 9bp
chr1 12317052 12317052 1 + C T rs138858983 12317053 + 12317033 12317073 41 CTAATACAAAGCTGCAATACCGGCAAATCATGGAATTCCTC CTAATACAAAGCTGCAATATCGGCAAATCATGGAATTCCTC < 41bp 1 0.293913065778547 1 0.706778764724731 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VPS13D ENSG00000048707 CDS Human protein_coding chr1:12317053 chr1:12317052 synonymous SNV . 0 20 hm5C_associated_SNPs_2260 0 0 1 0 2 VPS13D chr1:12317144 5'GT 12317144 Upstream 93bp
chr1 15250983 15250983 1 + G A rs182975678 15250963 + 15250943 15250983 41 GGGCCGGGCCCGCGCGGCCCCCGGGACCCGCAGCCTGCGAG GGGCCGGGCCCGCGCGGCCCCCGGGACCCGCAGCCTGCGAA < 41bp 1 0.661723311030648 1 0.841070771217346 experiment 0.676553377938704 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZN ENSG00000189337 CDS Human protein_coding chr1:15250963 chr1:15250983 synonymous SNV . 0 41 hm5C_associated_SNPs_2261 0 0 0 0 1 KAZN chr1:15251068 5'GT 15251068 Upstream 86bp
chr1 16056364 16056364 1 + G A rs3817269 16056369 + 16056349 16056389 41 CCCCAGCATCCTGACGGATGCCACCATGGAGAAGCTGGCAC CCCCAGCATCCTGACAGATGCCACCATGGAGAAGCTGGCAC < 41bp 1 0.0650160557731241 1 0.0659830868244171 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16056369 chr1:16056364 synonymous SNV . 0 16 hm5C_associated_SNPs_2266 0 0 1 0 2 PLEKHM2 chr1:16056292 3'AG 16056292 Downstream 73bp
chr1 16056364 16056364 1 + G A rs3817269 16056369 + 16056349 16056389 41 CCCCAGCATCCTGACGGATGCCACCATGGAGAAGCTGGCAC CCCCAGCATCCTGACAGATGCCACCATGGAGAAGCTGGCAC < 41bp 1 0.0650160557731241 1 0.0659830868244171 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16056369 chr1:16056364 synonymous SNV . 0 16 hm5C_associated_SNPs_2266 0 0 1 0 2 PLEKHM2 chr1:16056424 5'GT 16056424 Upstream 61bp
chr1 16056364 16056364 1 + G A rs3817269 16056373 + 16056353 16056393 41 AGCATCCTGACGGATGCCACCATGGAGAAGCTGGCACTGGC AGCATCCTGACAGATGCCACCATGGAGAAGCTGGCACTGGC < 41bp 1 0.358224691599603 1 0.441890299320221 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16056373 chr1:16056364 synonymous SNV . 0 12 hm5C_associated_SNPs_2267 0 0 1 0 2 PLEKHM2 chr1:16056292 3'AG 16056292 Downstream 73bp
chr1 16056364 16056364 1 + G A rs3817269 16056373 + 16056353 16056393 41 AGCATCCTGACGGATGCCACCATGGAGAAGCTGGCACTGGC AGCATCCTGACAGATGCCACCATGGAGAAGCTGGCACTGGC < 41bp 1 0.358224691599603 1 0.441890299320221 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16056373 chr1:16056364 synonymous SNV . 0 12 hm5C_associated_SNPs_2267 0 0 1 0 2 PLEKHM2 chr1:16056424 5'GT 16056424 Upstream 61bp
chr1 16199344 16199344 1 + C T rs375389506 16199355 + 16199335 16199375 41 AATTCTTCCCAAGAGGGGATCTGAAGGAGGAGTGGCTGCCT AATTCTTCCTAAGAGGGGATCTGAAGGAGGAGTGGCTGCCT < 41bp 1 0.441048253352936 1 0.857460677623749 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16199355 chr1:16199344 synonymous SNV . 0 10 hm5C_associated_SNPs_2268 0 0 1 0 1 SPEN chr1:16199311 3'AG 16199311 Downstream 34bp
chr1 16349137 16349137 1 + G A rs9442189 16349157 + 16349137 16349177 41 GTGAGGGCTTCTCAGGGGACCCTGTGACTCTGCAGGAGCTG ATGAGGGCTTCTCAGGGGACCCTGTGACTCTGCAGGAGCTG < 41bp 1 0.135689231977855 1 0.0836345851421356 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16349157 chr1:16349137 nonsynonymous SNV 0.734 2 1 hm5C_associated_SNPs_2272 0 1 0 0 2 CLCNKA chr1:16349108 3'AG 16349108 Downstream 30bp
chr1 16349137 16349137 1 + G A rs9442189 16349157 + 16349137 16349177 41 GTGAGGGCTTCTCAGGGGACCCTGTGACTCTGCAGGAGCTG ATGAGGGCTTCTCAGGGGACCCTGTGACTCTGCAGGAGCTG < 41bp 1 0.135689231977855 1 0.0836345851421356 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16349157 chr1:16349137 nonsynonymous SNV 0.734 2 1 hm5C_associated_SNPs_2272 0 1 0 0 2 CLCNKA chr1:16349214 5'GT 16349214 Upstream 78bp
chr1 16358248 16358248 1 + A G rs144453223 16358254 + 16358234 16358274 41 TGAACCACAGCATCACCACACTGGCCAAGGACACGCCGCTG TGAACCACAGCATCGCCACACTGGCCAAGGACACGCCGCTG < 41bp 1 0.444106004016039 1 0.395307451486588 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16358254 chr1:16358248 nonsynonymous SNV 0.094 1 15 hm5C_associated_SNPs_2273 0 0 0 0 3 CLCNKA chr1:16358205 3'AG 16358205 Downstream 44bp
chr1 16358248 16358248 1 + A G rs144453223 16358254 + 16358234 16358274 41 TGAACCACAGCATCACCACACTGGCCAAGGACACGCCGCTG TGAACCACAGCATCGCCACACTGGCCAAGGACACGCCGCTG < 41bp 1 0.444106004016039 1 0.395307451486588 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16358254 chr1:16358248 nonsynonymous SNV 0.094 1 15 hm5C_associated_SNPs_2273 0 0 0 0 3 CLCNKA chr1:16358289 5'GT 16358289 Upstream 42bp
chr1 16358248 16358248 1 + A G rs144453223 16358254 + 16358234 16358274 41 TGAACCACAGCATCACCACACTGGCCAAGGACACGCCGCTG TGAACCACAGCATCGCCACACTGGCCAAGGACACGCCGCTG < 41bp 1 0.444106004016039 1 0.395307451486588 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16358254 chr1:16358248 nonsynonymous SNV 0.094 1 15 hm5C_associated_SNPs_2273 0 0 0 0 3 CLCNKA chr1:16358338 5'GT 16358338 Upstream 91bp
chr1 17265601 17265601 1 + C T rs146792981 17265609 + 17265589 17265629 41 GCTCGCCCTGATCCACTCCGCCCTGCACAAGCGCCAGCTGC GCTCGCCCTGATTCACTCCGCCCTGCACAAGCGCCAGCTGC < 41bp 1 0.0859157491126399 1 0.225071310997009 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CROCC ENSG00000058453 CDS Human protein_coding chr1:17265609 chr1:17265601 synonymous SNV . 0 13 hm5C_associated_SNPs_2424 0 0 0 0 1 CROCC chr1:17265637 5'GT 17265637 Upstream 37bp
chr1 17949640 17949640 1 + C T rs560500744 17949656 + 17949636 17949676 41 CCACCGAGAAGATCGGGGACCTCTTCGTGGCCTCGGTAAGT CCACTGAGAAGATCGGGGACCTCTTCGTGGCCTCGGTAAGT < 41bp 1 0.123884953931909 1 0.0298303365707397 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF10L ENSG00000074964 CDS Human protein_coding chr1:17949656 chr1:17949640 synonymous SNV . 0 5 hm5C_associated_SNPs_2425 0 0 1 0 1 ARHGEF10L chr1:17949670 5'GT 17949670 Upstream 31bp
chr1 17949661 17949661 1 + C T rs142153324 17949656 + 17949636 17949676 41 CCACCGAGAAGATCGGGGACCTCTTCGTGGCCTCGGTAAGT CCACCGAGAAGATCGGGGACCTCTTTGTGGCCTCGGTAAGT < 41bp 1 0.161651370068853 1 0.0501843988895416 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF10L ENSG00000074964 CDS Human protein_coding chr1:17949656 chr1:17949661 synonymous SNV . 0 26 hm5C_associated_SNPs_2426 0 0 1 0 1 ARHGEF10L chr1:17949670 5'GT 17949670 Upstream 10bp
chr1 21900171 21900171 1 + A G rs3200255 21900169 + 21900149 21900189 41 CCTCCTCAGGTCTCTTCGAGCCAGGGGACATGCAGTACGAG CCTCCTCAGGTCTCTTCGAGCCGGGGGACATGCAGTACGAG < 41bp 1 0.569397763140749 1 0.92684942483902 experiment 0.861204473718503 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALPL ENSG00000162551 CDS Human protein_coding chr1:21900169 chr1:21900171 synonymous SNV . 0 23 hm5C_associated_SNPs_2440 2 0 0 0 1 ALPL chr1:21900158 3'AG 21900158 Downstream 14bp
chr1 22307553 22307553 1 + G A rs147301723 22307561 + 22307541 22307581 41 ACCTACCAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAA ACCTACCAGGTGATGTTGGGCGAGTACGACCGTGCTGTGAA < 41bp 1 0.567209966042836 1 0.437266528606415 experiment 0.865580067914328 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307561 chr1:22307553 nonsynonymous SNV 0.089 2 13 hm5C_associated_SNPs_2441 0 0 0 0 1 CELA3B chr1:22307531 3'AG 22307531 Downstream 23bp
chr1 22307553 22307553 1 + G A rs147301723 22307567 + 22307547 22307587 41 CAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGG CAGGTGATGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGG < 41bp 1 0.457732822434326 1 0.50342321395874 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307567 chr1:22307553 nonsynonymous SNV 0.089 2 7 hm5C_associated_SNPs_2442 0 0 0 0 1 CELA3B chr1:22307531 3'AG 22307531 Downstream 23bp
chr1 22307553 22307553 1 + G A rs147301723 22307570 + 22307550 22307590 41 GTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCC GTGATGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCC < 41bp 1 0.284140808165509 1 0.571966052055359 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307570 chr1:22307553 nonsynonymous SNV 0.089 2 4 hm5C_associated_SNPs_2443 0 0 0 0 1 CELA3B chr1:22307531 3'AG 22307531 Downstream 23bp
chr1 22307582 22307582 1 + G A rs115521366 22307567 + 22307547 22307587 41 CAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGG CAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAAAGAGGG < 41bp 1 0.393979579238294 1 0.52284973859787 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307567 chr1:22307582 synonymous SNV . 0 36 hm5C_associated_SNPs_2444 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 52bp
chr1 22307582 22307582 1 + G A rs115521366 22307567 + 22307547 22307587 41 CAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGG CAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAAAGAGGG < 41bp 1 0.393979579238294 1 0.52284973859787 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307567 chr1:22307582 synonymous SNV . 0 36 hm5C_associated_SNPs_2444 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 84bp
chr1 22307582 22307582 1 + G A rs115521366 22307570 + 22307550 22307590 41 GTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCC GTGGTGTTGGGCGAGTACGACCGTGCTGTGAAAGAGGGCCC < 41bp 1 0.298140432596728 1 0.693871974945068 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307570 chr1:22307582 synonymous SNV . 0 33 hm5C_associated_SNPs_2445 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 52bp
chr1 22307582 22307582 1 + G A rs115521366 22307570 + 22307550 22307590 41 GTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCC GTGGTGTTGGGCGAGTACGACCGTGCTGTGAAAGAGGGCCC < 41bp 1 0.298140432596728 1 0.693871974945068 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307570 chr1:22307582 synonymous SNV . 0 33 hm5C_associated_SNPs_2445 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 84bp
chr1 22307582 22307582 1 + G A rs115521366 22307575 + 22307555 22307595 41 GTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCCCGAGC GTTGGGCGAGTACGACCGTGCTGTGAAAGAGGGCCCCGAGC < 41bp 1 0.558990075415636 1 0.150860786437988 experiment 0.882019849168728 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307575 chr1:22307582 synonymous SNV . 0 28 hm5C_associated_SNPs_2446 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 52bp
chr1 22307582 22307582 1 + G A rs115521366 22307575 + 22307555 22307595 41 GTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCCCGAGC GTTGGGCGAGTACGACCGTGCTGTGAAAGAGGGCCCCGAGC < 41bp 1 0.558990075415636 1 0.150860786437988 experiment 0.882019849168728 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307575 chr1:22307582 synonymous SNV . 0 28 hm5C_associated_SNPs_2446 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 84bp
chr1 22307582 22307582 1 + G A rs115521366 22307588 + 22307568 22307608 41 GACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT GACCGTGCTGTGAAAGAGGGCCCCGAGCAGGTGATCCCCAT < 41bp 1 0.245943048260509 1 0.0691841840744019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307588 chr1:22307582 synonymous SNV . 0 15 hm5C_associated_SNPs_2447 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 52bp
chr1 22307582 22307582 1 + G A rs115521366 22307588 + 22307568 22307608 41 GACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT GACCGTGCTGTGAAAGAGGGCCCCGAGCAGGTGATCCCCAT < 41bp 1 0.245943048260509 1 0.0691841840744019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307588 chr1:22307582 synonymous SNV . 0 15 hm5C_associated_SNPs_2447 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 84bp
chr1 22307582 22307582 1 + G A rs115521366 22307589 + 22307569 22307609 41 ACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC ACCGTGCTGTGAAAGAGGGCCCCGAGCAGGTGATCCCCATC < 41bp 1 0.505074963618888 1 0.223629474639893 experiment 0.989850072762224 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307589 chr1:22307582 synonymous SNV . 0 14 hm5C_associated_SNPs_2448 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 52bp
chr1 22307582 22307582 1 + G A rs115521366 22307589 + 22307569 22307609 41 ACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC ACCGTGCTGTGAAAGAGGGCCCCGAGCAGGTGATCCCCATC < 41bp 1 0.505074963618888 1 0.223629474639893 experiment 0.989850072762224 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307589 chr1:22307582 synonymous SNV . 0 14 hm5C_associated_SNPs_2448 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 84bp
chr1 22307582 22307582 1 + G A rs115521366 22307590 + 22307570 22307610 41 CCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA CCGTGCTGTGAAAGAGGGCCCCGAGCAGGTGATCCCCATCA < 41bp 1 0.343235939030569 1 0.138304710388184 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307590 chr1:22307582 synonymous SNV . 0 13 hm5C_associated_SNPs_2449 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 52bp
chr1 22307582 22307582 1 + G A rs115521366 22307590 + 22307570 22307610 41 CCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA CCGTGCTGTGAAAGAGGGCCCCGAGCAGGTGATCCCCATCA < 41bp 1 0.343235939030569 1 0.138304710388184 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307590 chr1:22307582 synonymous SNV . 0 13 hm5C_associated_SNPs_2449 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 84bp
chr1 22307582 22307582 1 + G A rs115521366 22307591 + 22307571 22307611 41 CGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA CGTGCTGTGAAAGAGGGCCCCGAGCAGGTGATCCCCATCAA < 41bp 1 0.540114260075492 1 0.242347300052643 experiment 0.919771479849015 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307591 chr1:22307582 synonymous SNV . 0 12 hm5C_associated_SNPs_2450 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 52bp
chr1 22307582 22307582 1 + G A rs115521366 22307591 + 22307571 22307611 41 CGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA CGTGCTGTGAAAGAGGGCCCCGAGCAGGTGATCCCCATCAA < 41bp 1 0.540114260075492 1 0.242347300052643 experiment 0.919771479849015 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307591 chr1:22307582 synonymous SNV . 0 12 hm5C_associated_SNPs_2450 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 84bp
chr1 22307582 22307582 1 + G A rs115521366 22307595 + 22307575 22307615 41 CTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAACTCT CTGTGAAAGAGGGCCCCGAGCAGGTGATCCCCATCAACTCT < 41bp 1 0.746259540753607 1 0.819255113601685 experiment 0.507480918492786 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307595 chr1:22307582 synonymous SNV . 0 8 hm5C_associated_SNPs_2451 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 52bp
chr1 22307582 22307582 1 + G A rs115521366 22307595 + 22307575 22307615 41 CTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAACTCT CTGTGAAAGAGGGCCCCGAGCAGGTGATCCCCATCAACTCT < 41bp 1 0.746259540753607 1 0.819255113601685 experiment 0.507480918492786 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307595 chr1:22307582 synonymous SNV . 0 8 hm5C_associated_SNPs_2451 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 84bp
chr1 22329543 22329543 1 + C A rs7519660 22329556 + 22329536 22329576 41 CGTTGTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCT CGTTGTCAATGGTGAGGATGCGGTCCCCTACAGCTGGCCCT < 41bp 1 0.22278028145206 1 0.338258266448975 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329556 chr1:22329543 nonsynonymous SNV 0.879 0 8 hm5C_associated_SNPs_2452 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 48bp
chr1 22329543 22329543 1 + C A rs7519660 22329556 + 22329536 22329576 41 CGTTGTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCT CGTTGTCAATGGTGAGGATGCGGTCCCCTACAGCTGGCCCT < 41bp 1 0.22278028145206 1 0.338258266448975 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329556 chr1:22329543 nonsynonymous SNV 0.879 0 8 hm5C_associated_SNPs_2452 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 39bp
chr1 22329543 22329543 1 + C A rs7519660 22329560 + 22329540 22329580 41 GTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCA GTCAATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCA < 41bp 1 0.218505262587527 1 0.0862883031368256 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329560 chr1:22329543 nonsynonymous SNV 0.879 0 4 hm5C_associated_SNPs_2453 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 48bp
chr1 22329543 22329543 1 + C A rs7519660 22329560 + 22329540 22329580 41 GTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCA GTCAATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCA < 41bp 1 0.218505262587527 1 0.0862883031368256 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329560 chr1:22329543 nonsynonymous SNV 0.879 0 4 hm5C_associated_SNPs_2453 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 39bp
chr1 22329543 22329543 1 + C A rs7519660 22329561 + 22329541 22329581 41 TCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAG TCAATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAG < 41bp 1 0.234642922720969 1 0.156805604696274 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329561 chr1:22329543 nonsynonymous SNV 0.879 0 3 hm5C_associated_SNPs_2454 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 48bp
chr1 22329543 22329543 1 + C A rs7519660 22329561 + 22329541 22329581 41 TCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAG TCAATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAG < 41bp 1 0.234642922720969 1 0.156805604696274 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329561 chr1:22329543 nonsynonymous SNV 0.879 0 3 hm5C_associated_SNPs_2454 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 39bp
chr1 22329543 22329543 1 + C A rs7519660 22329562 + 22329542 22329582 41 CCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGG CAATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGG < 41bp 1 0.0466519596542054 1 0.24813774228096 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329562 chr1:22329543 nonsynonymous SNV 0.879 0 2 hm5C_associated_SNPs_2455 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 48bp
chr1 22329543 22329543 1 + C A rs7519660 22329562 + 22329542 22329582 41 CCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGG CAATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGG < 41bp 1 0.0466519596542054 1 0.24813774228096 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329562 chr1:22329543 nonsynonymous SNV 0.879 0 2 hm5C_associated_SNPs_2455 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 39bp
chr1 22329543 22329543 1 + C A rs7519660 22329563 + 22329543 22329583 41 CATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGT AATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGT < 41bp 1 0.758515948011823 1 0.580910563468933 experiment 0.482968103976354 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329563 chr1:22329543 nonsynonymous SNV 0.879 0 1 hm5C_associated_SNPs_2456 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 48bp
chr1 22329543 22329543 1 + C A rs7519660 22329563 + 22329543 22329583 41 CATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGT AATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGT < 41bp 1 0.758515948011823 1 0.580910563468933 experiment 0.482968103976354 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329563 chr1:22329543 nonsynonymous SNV 0.879 0 1 hm5C_associated_SNPs_2456 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 39bp
chr1 22331999 22331999 1 + C A rs60166197 22331980 + 22331960 22332000 41 AAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCATCG AAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCATAG < 41bp 1 0.552166886456475 1 0.229766458272934 experiment 0.895666227087051 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331980 chr1:22331999 synonymous SNV . 0 40 hm5C_associated_SNPs_2457 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 60bp
chr1 22331999 22331999 1 + C A rs60166197 22331980 + 22331960 22332000 41 AAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCATCG AAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCATAG < 41bp 1 0.552166886456475 1 0.229766458272934 experiment 0.895666227087051 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331980 chr1:22331999 synonymous SNV . 0 40 hm5C_associated_SNPs_2457 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 39bp
chr1 22331999 22331999 1 + C A rs60166197 22331987 + 22331967 22332007 41 AGCTTCTACCACACGTGTGGCGGTAGCCTCATCGCCCCCGA AGCTTCTACCACACGTGTGGCGGTAGCCTCATAGCCCCCGA < 41bp 1 0.762198511640381 1 0.565807342529297 experiment 0.475602976719239 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331987 chr1:22331999 synonymous SNV . 0 33 hm5C_associated_SNPs_2458 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 60bp
chr1 22331999 22331999 1 + C A rs60166197 22331987 + 22331967 22332007 41 AGCTTCTACCACACGTGTGGCGGTAGCCTCATCGCCCCCGA AGCTTCTACCACACGTGTGGCGGTAGCCTCATAGCCCCCGA < 41bp 1 0.762198511640381 1 0.565807342529297 experiment 0.475602976719239 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331987 chr1:22331999 synonymous SNV . 0 33 hm5C_associated_SNPs_2458 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 39bp
chr1 22331999 22331999 1 + C A rs60166197 22331993 + 22331973 22332013 41 TACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGT TACCACACGTGTGGCGGTAGCCTCATAGCCCCCGATTGGGT < 41bp 1 0.354438818338449 1 0.0779540538787842 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331993 chr1:22331999 synonymous SNV . 0 27 hm5C_associated_SNPs_2459 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 60bp
chr1 22331999 22331999 1 + C A rs60166197 22331993 + 22331973 22332013 41 TACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGT TACCACACGTGTGGCGGTAGCCTCATAGCCCCCGATTGGGT < 41bp 1 0.354438818338449 1 0.0779540538787842 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331993 chr1:22331999 synonymous SNV . 0 27 hm5C_associated_SNPs_2459 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 39bp
chr1 22331999 22331999 1 + C A rs60166197 22331994 + 22331974 22332014 41 ACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTT ACCACACGTGTGGCGGTAGCCTCATAGCCCCCGATTGGGTT < 41bp 1 0.603567551078593 1 0.477241098880768 experiment 0.792864897842814 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331994 chr1:22331999 synonymous SNV . 0 26 hm5C_associated_SNPs_2460 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 60bp
chr1 22331999 22331999 1 + C A rs60166197 22331994 + 22331974 22332014 41 ACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTT ACCACACGTGTGGCGGTAGCCTCATAGCCCCCGATTGGGTT < 41bp 1 0.603567551078593 1 0.477241098880768 experiment 0.792864897842814 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331994 chr1:22331999 synonymous SNV . 0 26 hm5C_associated_SNPs_2460 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 39bp
chr1 22331999 22331999 1 + C A rs60166197 22331996 + 22331976 22332016 41 CACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGT CACACGTGTGGCGGTAGCCTCATAGCCCCCGATTGGGTTGT < 41bp 1 0.328155567950954 1 0.529062271118164 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331996 chr1:22331999 synonymous SNV . 0 24 hm5C_associated_SNPs_2461 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 60bp
chr1 22331999 22331999 1 + C A rs60166197 22331996 + 22331976 22332016 41 CACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGT CACACGTGTGGCGGTAGCCTCATAGCCCCCGATTGGGTTGT < 41bp 1 0.328155567950954 1 0.529062271118164 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331996 chr1:22331999 synonymous SNV . 0 24 hm5C_associated_SNPs_2461 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 39bp
chr1 22331999 22331999 1 + C A rs60166197 22332001 + 22331981 22332021 41 GTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTG GTGTGGCGGTAGCCTCATAGCCCCCGATTGGGTTGTGACTG < 41bp 1 0.431730448161564 1 0.270146071910858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332001 chr1:22331999 synonymous SNV . 0 19 hm5C_associated_SNPs_2462 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 60bp
chr1 22331999 22331999 1 + C A rs60166197 22332001 + 22331981 22332021 41 GTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTG GTGTGGCGGTAGCCTCATAGCCCCCGATTGGGTTGTGACTG < 41bp 1 0.431730448161564 1 0.270146071910858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332001 chr1:22331999 synonymous SNV . 0 19 hm5C_associated_SNPs_2462 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 39bp
chr1 22331999 22331999 1 + C A rs60166197 22332002 + 22331982 22332022 41 TGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGC TGTGGCGGTAGCCTCATAGCCCCCGATTGGGTTGTGACTGC < 41bp 1 0.676542727215977 1 0.83456015586853 experiment 0.646914545568045 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332002 chr1:22331999 synonymous SNV . 0 18 hm5C_associated_SNPs_2463 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 60bp
chr1 22331999 22331999 1 + C A rs60166197 22332002 + 22331982 22332022 41 TGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGC TGTGGCGGTAGCCTCATAGCCCCCGATTGGGTTGTGACTGC < 41bp 1 0.676542727215977 1 0.83456015586853 experiment 0.646914545568045 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332002 chr1:22331999 synonymous SNV . 0 18 hm5C_associated_SNPs_2463 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 39bp
chr1 22331999 22331999 1 + C A rs60166197 22332003 + 22331983 22332023 41 GTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCC GTGGCGGTAGCCTCATAGCCCCCGATTGGGTTGTGACTGCC < 41bp 1 0.785464474497335 1 0.115765362977982 experiment 0.429071051005329 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332003 chr1:22331999 synonymous SNV . 0 17 hm5C_associated_SNPs_2464 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 60bp
chr1 22331999 22331999 1 + C A rs60166197 22332003 + 22331983 22332023 41 GTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCC GTGGCGGTAGCCTCATAGCCCCCGATTGGGTTGTGACTGCC < 41bp 1 0.785464474497335 1 0.115765362977982 experiment 0.429071051005329 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332003 chr1:22331999 synonymous SNV . 0 17 hm5C_associated_SNPs_2464 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 39bp
chr1 22331999 22331999 1 + C A rs60166197 22332004 + 22331984 22332024 41 TGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCG TGGCGGTAGCCTCATAGCCCCCGATTGGGTTGTGACTGCCG < 41bp 1 0.195866797095721 1 0.0484673678874969 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332004 chr1:22331999 synonymous SNV . 0 16 hm5C_associated_SNPs_2465 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 60bp
chr1 22331999 22331999 1 + C A rs60166197 22332004 + 22331984 22332024 41 TGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCG TGGCGGTAGCCTCATAGCCCCCGATTGGGTTGTGACTGCCG < 41bp 1 0.195866797095721 1 0.0484673678874969 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332004 chr1:22331999 synonymous SNV . 0 16 hm5C_associated_SNPs_2465 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 39bp
chr1 22331999 22331999 1 + C A rs60166197 22332005 + 22331985 22332025 41 GGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGG GGCGGTAGCCTCATAGCCCCCGATTGGGTTGTGACTGCCGG < 41bp 1 0.362954574080817 1 0.321710824966431 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332005 chr1:22331999 synonymous SNV . 0 15 hm5C_associated_SNPs_2466 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 60bp
chr1 22331999 22331999 1 + C A rs60166197 22332005 + 22331985 22332025 41 GGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGG GGCGGTAGCCTCATAGCCCCCGATTGGGTTGTGACTGCCGG < 41bp 1 0.362954574080817 1 0.321710824966431 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332005 chr1:22331999 synonymous SNV . 0 15 hm5C_associated_SNPs_2466 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 39bp
chr1 22331999 22331999 1 + C A rs60166197 22332019 + 22331999 22332039 41 CGCCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGT AGCCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGT < 41bp 1 0.652309828263341 1 0.28753250837326 experiment 0.695380343473318 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332019 chr1:22331999 synonymous SNV . 0 1 hm5C_associated_SNPs_2467 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 60bp
chr1 22331999 22331999 1 + C A rs60166197 22332019 + 22331999 22332039 41 CGCCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGT AGCCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGT < 41bp 1 0.652309828263341 1 0.28753250837326 experiment 0.695380343473318 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332019 chr1:22331999 synonymous SNV . 0 1 hm5C_associated_SNPs_2467 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 39bp
chr1 22332177 22332177 1 + G C rs574373339 22332162 + 22332142 22332182 41 CCTCTGCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTG CCTCTGCCTGCAGGAGGGATCTGACCTACCAGGTGCTGTTG < 41bp 1 0.595855622911669 1 0.294580399990082 experiment 0.808288754176661 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332162 chr1:22332177 nonsynonymous SNV 0.233 2 36 hm5C_associated_SNPs_2468 0 0 0 0 1 CELA3A chr1:22332155 3'AG 22332155 Downstream 23bp
chr1 22332177 22332177 1 + G C rs574373339 22332166 + 22332146 22332186 41 TGCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTG TGCCTGCAGGAGGGATCTGACCTACCAGGTGCTGTTGGGTG < 41bp 1 0.0677473078569367 1 0.194716960191727 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332166 chr1:22332177 nonsynonymous SNV 0.233 2 32 hm5C_associated_SNPs_2469 0 0 0 0 1 CELA3A chr1:22332155 3'AG 22332155 Downstream 23bp
chr1 22332177 22332177 1 + G C rs574373339 22332167 + 22332147 22332187 41 GCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTGA GCCTGCAGGAGGGATCTGACCTACCAGGTGCTGTTGGGTGA < 41bp 1 0.518677747791392 1 0.0807413458824158 experiment 0.962644504417216 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332167 chr1:22332177 nonsynonymous SNV 0.233 2 31 hm5C_associated_SNPs_2470 0 0 0 0 1 CELA3A chr1:22332155 3'AG 22332155 Downstream 23bp
chr1 22332177 22332177 1 + G C rs574373339 22332170 + 22332150 22332190 41 TGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTGAGTA TGCAGGAGGGATCTGACCTACCAGGTGCTGTTGGGTGAGTA < 41bp 1 0.467933460652713 1 0.462318539619446 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332170 chr1:22332177 nonsynonymous SNV 0.233 2 28 hm5C_associated_SNPs_2471 0 0 0 0 1 CELA3A chr1:22332155 3'AG 22332155 Downstream 23bp
chr1 22332177 22332177 1 + G C rs574373339 22332191 + 22332171 22332211 41 CAGGTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGG CAGGTGCTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGG < 41bp 1 0.377769436172376 1 0.368681341409683 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332191 chr1:22332177 nonsynonymous SNV 0.233 2 7 hm5C_associated_SNPs_2472 0 0 0 0 1 CELA3A chr1:22332155 3'AG 22332155 Downstream 23bp
chr1 22332177 22332177 1 + G C rs574373339 22332194 + 22332174 22332214 41 GTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCC GTGCTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCC < 41bp 1 0.115885589973846 1 0.182609587907791 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332194 chr1:22332177 nonsynonymous SNV 0.233 2 4 hm5C_associated_SNPs_2473 0 0 0 0 1 CELA3A chr1:22332155 3'AG 22332155 Downstream 23bp
chr1 22332177 22332177 1 + G C rs574373339 22332195 + 22332175 22332215 41 TGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCC TGCTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCC < 41bp 1 0.558747548930869 1 0.127831101417542 experiment 0.882504902138261 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332195 chr1:22332177 nonsynonymous SNV 0.233 2 3 hm5C_associated_SNPs_2474 0 0 0 0 1 CELA3A chr1:22332155 3'AG 22332155 Downstream 23bp
chr1 22332245 22332245 1 + G C rs74958230 22332227 + 22332207 22332247 41 GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCT GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGACCT < 41bp 1 0.561022279365318 1 0.062059223651886 experiment 0.877955441269364 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332227 chr1:22332245 nonsynonymous SNV 0.001 0 39 hm5C_associated_SNPs_2475 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 91bp
chr1 22332245 22332245 1 + G C rs74958230 22332227 + 22332207 22332247 41 GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCT GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGACCT < 41bp 1 0.561022279365318 1 0.062059223651886 experiment 0.877955441269364 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332227 chr1:22332245 nonsynonymous SNV 0.001 0 39 hm5C_associated_SNPs_2475 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 45bp
chr1 22332245 22332245 1 + G C rs74958230 22332228 + 22332208 22332248 41 AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTG AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGACCTG < 41bp 1 0.154540679194506 1 0.0247264802455902 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332228 chr1:22332245 nonsynonymous SNV 0.001 0 38 hm5C_associated_SNPs_2476 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 91bp
chr1 22332245 22332245 1 + G C rs74958230 22332228 + 22332208 22332248 41 AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTG AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGACCTG < 41bp 1 0.154540679194506 1 0.0247264802455902 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332228 chr1:22332245 nonsynonymous SNV 0.001 0 38 hm5C_associated_SNPs_2476 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 45bp
chr1 22332245 22332245 1 + G C rs74958230 22332229 + 22332209 22332249 41 GGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGT GGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGACCTGT < 41bp 1 0.0797855840844246 1 0.0820827484130859 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332229 chr1:22332245 nonsynonymous SNV 0.001 0 37 hm5C_associated_SNPs_2477 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 91bp
chr1 22332245 22332245 1 + G C rs74958230 22332229 + 22332209 22332249 41 GGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGT GGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGACCTGT < 41bp 1 0.0797855840844246 1 0.0820827484130859 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332229 chr1:22332245 nonsynonymous SNV 0.001 0 37 hm5C_associated_SNPs_2477 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 45bp
chr1 22332245 22332245 1 + G C rs74958230 22332230 + 22332210 22332250 41 GGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTT GGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGACCTGTT < 41bp 1 0.473560417223752 1 0.199098140001297 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332230 chr1:22332245 nonsynonymous SNV 0.001 0 36 hm5C_associated_SNPs_2478 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 91bp
chr1 22332245 22332245 1 + G C rs74958230 22332230 + 22332210 22332250 41 GGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTT GGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGACCTGTT < 41bp 1 0.473560417223752 1 0.199098140001297 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332230 chr1:22332245 nonsynonymous SNV 0.001 0 36 hm5C_associated_SNPs_2478 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 45bp
chr1 22332245 22332245 1 + G C rs74958230 22332233 + 22332213 22332253 41 CCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGT CCCGAGCAGGTGATCCCCATCAACTCTGAGGACCTGTTTGT < 41bp 1 0.476493097214044 1 0.51927661895752 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332233 chr1:22332245 nonsynonymous SNV 0.001 0 33 hm5C_associated_SNPs_2479 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 91bp
chr1 22332245 22332245 1 + G C rs74958230 22332233 + 22332213 22332253 41 CCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGT CCCGAGCAGGTGATCCCCATCAACTCTGAGGACCTGTTTGT < 41bp 1 0.476493097214044 1 0.51927661895752 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332233 chr1:22332245 nonsynonymous SNV 0.001 0 33 hm5C_associated_SNPs_2479 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 45bp
chr1 22332245 22332245 1 + G C rs74958230 22332236 + 22332216 22332256 41 GAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGTGCA GAGCAGGTGATCCCCATCAACTCTGAGGACCTGTTTGTGCA < 41bp 1 0.595552384691918 1 0.524219870567322 experiment 0.808895230616165 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332236 chr1:22332245 nonsynonymous SNV 0.001 0 30 hm5C_associated_SNPs_2480 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 91bp
chr1 22332245 22332245 1 + G C rs74958230 22332236 + 22332216 22332256 41 GAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGTGCA GAGCAGGTGATCCCCATCAACTCTGAGGACCTGTTTGTGCA < 41bp 1 0.595552384691918 1 0.524219870567322 experiment 0.808895230616165 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332236 chr1:22332245 nonsynonymous SNV 0.001 0 30 hm5C_associated_SNPs_2480 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 45bp
chr1 22332245 22332245 1 + G C rs74958230 22332246 + 22332226 22332266 41 TCCCCATCAACTCTGAGGAGCTGTTTGTGCATCCACTCTGG TCCCCATCAACTCTGAGGACCTGTTTGTGCATCCACTCTGG < 41bp 1 0.23617209739913 1 0.0921772420406342 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332246 chr1:22332245 nonsynonymous SNV 0.001 0 20 hm5C_associated_SNPs_2481 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 91bp
chr1 22332245 22332245 1 + G C rs74958230 22332246 + 22332226 22332266 41 TCCCCATCAACTCTGAGGAGCTGTTTGTGCATCCACTCTGG TCCCCATCAACTCTGAGGACCTGTTTGTGCATCCACTCTGG < 41bp 1 0.23617209739913 1 0.0921772420406342 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332246 chr1:22332245 nonsynonymous SNV 0.001 0 20 hm5C_associated_SNPs_2481 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 45bp
chr1 22332245 22332245 1 + G C rs74958230 22332255 + 22332235 22332275 41 ACTCTGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCG ACTCTGAGGACCTGTTTGTGCATCCACTCTGGAACCGCTCG < 41bp 1 0.219959030512251 1 0.37625190615654 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332255 chr1:22332245 nonsynonymous SNV 0.001 0 11 hm5C_associated_SNPs_2482 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 91bp
chr1 22332245 22332245 1 + G C rs74958230 22332255 + 22332235 22332275 41 ACTCTGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCG ACTCTGAGGACCTGTTTGTGCATCCACTCTGGAACCGCTCG < 41bp 1 0.219959030512251 1 0.37625190615654 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332255 chr1:22332245 nonsynonymous SNV 0.001 0 11 hm5C_associated_SNPs_2482 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 45bp
chr1 22332245 22332245 1 + G C rs74958230 22332258 + 22332238 22332278 41 CTGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGT CTGAGGACCTGTTTGTGCATCCACTCTGGAACCGCTCGTGT < 41bp 1 0.213282214491025 1 0.0876748561859131 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332258 chr1:22332245 nonsynonymous SNV 0.001 0 8 hm5C_associated_SNPs_2483 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 91bp
chr1 22332245 22332245 1 + G C rs74958230 22332258 + 22332238 22332278 41 CTGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGT CTGAGGACCTGTTTGTGCATCCACTCTGGAACCGCTCGTGT < 41bp 1 0.213282214491025 1 0.0876748561859131 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332258 chr1:22332245 nonsynonymous SNV 0.001 0 8 hm5C_associated_SNPs_2483 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 45bp
chr1 22332245 22332245 1 + G C rs74958230 22332259 + 22332239 22332279 41 TGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGTG TGAGGACCTGTTTGTGCATCCACTCTGGAACCGCTCGTGTG < 41bp 1 0.31485349441546 1 0.0633180141448975 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332259 chr1:22332245 nonsynonymous SNV 0.001 0 7 hm5C_associated_SNPs_2484 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 91bp
chr1 22332245 22332245 1 + G C rs74958230 22332259 + 22332239 22332279 41 TGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGTG TGAGGACCTGTTTGTGCATCCACTCTGGAACCGCTCGTGTG < 41bp 1 0.31485349441546 1 0.0633180141448975 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332259 chr1:22332245 nonsynonymous SNV 0.001 0 7 hm5C_associated_SNPs_2484 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 45bp
chr1 22332245 22332245 1 + G C rs74958230 22332261 + 22332241 22332281 41 AGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG AGGACCTGTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG < 41bp 1 0.549258461761486 1 0.0956879556179047 experiment 0.901483076477028 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332261 chr1:22332245 nonsynonymous SNV 0.001 0 5 hm5C_associated_SNPs_2485 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 91bp
chr1 22332245 22332245 1 + G C rs74958230 22332261 + 22332241 22332281 41 AGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG AGGACCTGTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG < 41bp 1 0.549258461761486 1 0.0956879556179047 experiment 0.901483076477028 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332261 chr1:22332245 nonsynonymous SNV 0.001 0 5 hm5C_associated_SNPs_2485 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 45bp
chr1 22333405 22333405 1 + G A rs368803904 22333386 + 22333366 22333406 41 CCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCAGCGC CCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCAGCAC < 41bp 1 0.559861012310781 1 0.187176942825317 experiment 0.880277975378438 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333386 chr1:22333405 nonsynonymous SNV 0.693 3 40 hm5C_associated_SNPs_2486 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 35bp
chr1 22333405 22333405 1 + G A rs368803904 22333389 + 22333369 22333409 41 AGCAATGACATCGCCCTCATCAAGCTCTCACGCAGCGCCCA AGCAATGACATCGCCCTCATCAAGCTCTCACGCAGCACCCA < 41bp 1 0.56450597477286 1 0.803005635738373 experiment 0.870988050454279 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333389 chr1:22333405 nonsynonymous SNV 0.693 3 37 hm5C_associated_SNPs_2487 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 35bp
chr1 22333405 22333405 1 + G A rs368803904 22333393 + 22333373 22333413 41 ATGACATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTG ATGACATCGCCCTCATCAAGCTCTCACGCAGCACCCAGCTG < 41bp 1 0.224194165488938 1 0.042635053396225 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333393 chr1:22333405 nonsynonymous SNV 0.693 3 33 hm5C_associated_SNPs_2488 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 35bp
chr1 22333405 22333405 1 + G A rs368803904 22333395 + 22333375 22333415 41 GACATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGG GACATCGCCCTCATCAAGCTCTCACGCAGCACCCAGCTGGG < 41bp 1 0.276257575475427 1 0.140881508588791 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333395 chr1:22333405 nonsynonymous SNV 0.693 3 31 hm5C_associated_SNPs_2489 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 35bp
chr1 22333405 22333405 1 + G A rs368803904 22333397 + 22333377 22333417 41 CATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAG CATCGCCCTCATCAAGCTCTCACGCAGCACCCAGCTGGGAG < 41bp 1 0.572411567154639 1 0.225986123085022 experiment 0.855176865690723 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333397 chr1:22333405 nonsynonymous SNV 0.693 3 29 hm5C_associated_SNPs_2490 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 35bp
chr1 22333405 22333405 1 + G A rs368803904 22333399 + 22333379 22333419 41 TCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGAT TCGCCCTCATCAAGCTCTCACGCAGCACCCAGCTGGGAGAT < 41bp 1 0.592942519788146 1 0.214538037776947 experiment 0.814114960423708 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333399 chr1:22333405 nonsynonymous SNV 0.693 3 27 hm5C_associated_SNPs_2491 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 35bp
chr1 22333405 22333405 1 + G A rs368803904 22333404 + 22333384 22333424 41 CTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGT CTCATCAAGCTCTCACGCAGCACCCAGCTGGGAGATGCCGT < 41bp 1 0.230644859132347 1 0.101385563611984 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333404 chr1:22333405 nonsynonymous SNV 0.693 3 22 hm5C_associated_SNPs_2492 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 35bp
chr1 22333405 22333405 1 + G A rs368803904 22333406 + 22333386 22333426 41 CATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCC CATCAAGCTCTCACGCAGCACCCAGCTGGGAGATGCCGTCC < 41bp 1 0.377218076449307 1 0.0719006955623627 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333406 chr1:22333405 nonsynonymous SNV 0.693 3 20 hm5C_associated_SNPs_2493 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 35bp
chr1 22333405 22333405 1 + G A rs368803904 22333407 + 22333387 22333427 41 ATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCCA ATCAAGCTCTCACGCAGCACCCAGCTGGGAGATGCCGTCCA < 41bp 1 0.324730093503149 1 0.280444324016571 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333407 chr1:22333405 nonsynonymous SNV 0.693 3 19 hm5C_associated_SNPs_2494 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 35bp
chr1 22333405 22333405 1 + G A rs368803904 22333408 + 22333388 22333428 41 TCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCCAG TCAAGCTCTCACGCAGCACCCAGCTGGGAGATGCCGTCCAG < 41bp 1 0.762178441329344 1 0.652648687362671 experiment 0.475643117341312 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333408 chr1:22333405 nonsynonymous SNV 0.693 3 18 hm5C_associated_SNPs_2495 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 35bp
chr1 22333405 22333405 1 + G A rs368803904 22333421 + 22333401 22333441 41 CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC CAGCACCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC < 41bp 1 0.101948586897986 1 0.165355205535889 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333421 chr1:22333405 nonsynonymous SNV 0.693 3 5 hm5C_associated_SNPs_2496 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 35bp
chr1 22333405 22333405 1 + G A rs368803904 22333422 + 22333402 22333442 41 AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC AGCACCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC < 41bp 1 0.330465770451684 1 0.538744330406189 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333422 chr1:22333405 nonsynonymous SNV 0.693 3 4 hm5C_associated_SNPs_2497 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 35bp
chr1 22333405 22333405 1 + G A rs368803904 22333425 + 22333405 22333445 41 GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC ACCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC < 41bp 1 0.372671576878993 1 0.545641303062439 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333425 chr1:22333405 nonsynonymous SNV 0.693 3 1 hm5C_associated_SNPs_2498 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 35bp
chr1 22333419 22333419 1 + T C rs138658162 22333399 + 22333379 22333419 41 TCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGAT TCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGAC < 41bp 1 0.639949465710334 1 0.216540575027466 experiment 0.720101068579332 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333399 chr1:22333419 synonymous SNV . 0 41 hm5C_associated_SNPs_2499 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 49bp
chr1 22333419 22333419 1 + T C rs138658162 22333399 + 22333379 22333419 41 TCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGAT TCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGAC < 41bp 1 0.639949465710334 1 0.216540575027466 experiment 0.720101068579332 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333399 chr1:22333419 synonymous SNV . 0 41 hm5C_associated_SNPs_2499 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 89bp
chr1 22333419 22333419 1 + T C rs138658162 22333401 + 22333381 22333421 41 GCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGC GCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGACGC < 41bp 1 0.753906348513334 1 0.272412210702896 experiment 0.492187302973332 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333401 chr1:22333419 synonymous SNV . 0 39 hm5C_associated_SNPs_2500 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 49bp
chr1 22333419 22333419 1 + T C rs138658162 22333401 + 22333381 22333421 41 GCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGC GCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGACGC < 41bp 1 0.753906348513334 1 0.272412210702896 experiment 0.492187302973332 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333401 chr1:22333419 synonymous SNV . 0 39 hm5C_associated_SNPs_2500 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 89bp
chr1 22333419 22333419 1 + T C rs138658162 22333404 + 22333384 22333424 41 CTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGT CTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGACGCCGT < 41bp 1 0.324846927454546 1 0.237816244363785 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333404 chr1:22333419 synonymous SNV . 0 36 hm5C_associated_SNPs_2501 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 49bp
chr1 22333419 22333419 1 + T C rs138658162 22333404 + 22333384 22333424 41 CTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGT CTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGACGCCGT < 41bp 1 0.324846927454546 1 0.237816244363785 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333404 chr1:22333419 synonymous SNV . 0 36 hm5C_associated_SNPs_2501 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 89bp
chr1 22333419 22333419 1 + T C rs138658162 22333406 + 22333386 22333426 41 CATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCC CATCAAGCTCTCACGCAGCGCCCAGCTGGGAGACGCCGTCC < 41bp 1 0.358960005362984 1 0.0776342451572418 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333406 chr1:22333419 synonymous SNV . 0 34 hm5C_associated_SNPs_2502 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 49bp
chr1 22333419 22333419 1 + T C rs138658162 22333406 + 22333386 22333426 41 CATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCC CATCAAGCTCTCACGCAGCGCCCAGCTGGGAGACGCCGTCC < 41bp 1 0.358960005362984 1 0.0776342451572418 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333406 chr1:22333419 synonymous SNV . 0 34 hm5C_associated_SNPs_2502 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 89bp
chr1 22333419 22333419 1 + T C rs138658162 22333407 + 22333387 22333427 41 ATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCCA ATCAAGCTCTCACGCAGCGCCCAGCTGGGAGACGCCGTCCA < 41bp 1 0.26805674301935 1 0.141392201185226 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333407 chr1:22333419 synonymous SNV . 0 33 hm5C_associated_SNPs_2503 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 49bp
chr1 22333419 22333419 1 + T C rs138658162 22333407 + 22333387 22333427 41 ATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCCA ATCAAGCTCTCACGCAGCGCCCAGCTGGGAGACGCCGTCCA < 41bp 1 0.26805674301935 1 0.141392201185226 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333407 chr1:22333419 synonymous SNV . 0 33 hm5C_associated_SNPs_2503 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 89bp
chr1 22333419 22333419 1 + T C rs138658162 22333408 + 22333388 22333428 41 TCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCCAG TCAAGCTCTCACGCAGCGCCCAGCTGGGAGACGCCGTCCAG < 41bp 1 0.661533444668957 1 0.420954376459122 experiment 0.676933110662085 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333408 chr1:22333419 synonymous SNV . 0 32 hm5C_associated_SNPs_2504 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 49bp
chr1 22333419 22333419 1 + T C rs138658162 22333408 + 22333388 22333428 41 TCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCCAG TCAAGCTCTCACGCAGCGCCCAGCTGGGAGACGCCGTCCAG < 41bp 1 0.661533444668957 1 0.420954376459122 experiment 0.676933110662085 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333408 chr1:22333419 synonymous SNV . 0 32 hm5C_associated_SNPs_2504 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 89bp
chr1 22333419 22333419 1 + T C rs138658162 22333421 + 22333401 22333441 41 CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC CAGCGCCCAGCTGGGAGACGCCGTCCAGCTCGCCTCACTCC < 41bp 1 0.108201541049825 1 0.133911848068237 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333421 chr1:22333419 synonymous SNV . 0 19 hm5C_associated_SNPs_2505 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 49bp
chr1 22333419 22333419 1 + T C rs138658162 22333421 + 22333401 22333441 41 CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC CAGCGCCCAGCTGGGAGACGCCGTCCAGCTCGCCTCACTCC < 41bp 1 0.108201541049825 1 0.133911848068237 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333421 chr1:22333419 synonymous SNV . 0 19 hm5C_associated_SNPs_2505 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 89bp
chr1 22333419 22333419 1 + T C rs138658162 22333422 + 22333402 22333442 41 AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC AGCGCCCAGCTGGGAGACGCCGTCCAGCTCGCCTCACTCCC < 41bp 1 0.258858994813693 1 0.263603895902634 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333422 chr1:22333419 synonymous SNV . 0 18 hm5C_associated_SNPs_2506 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 49bp
chr1 22333419 22333419 1 + T C rs138658162 22333422 + 22333402 22333442 41 AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC AGCGCCCAGCTGGGAGACGCCGTCCAGCTCGCCTCACTCCC < 41bp 1 0.258858994813693 1 0.263603895902634 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333422 chr1:22333419 synonymous SNV . 0 18 hm5C_associated_SNPs_2506 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 89bp
chr1 22333419 22333419 1 + T C rs138658162 22333425 + 22333405 22333445 41 GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC GCCCAGCTGGGAGACGCCGTCCAGCTCGCCTCACTCCCTCC < 41bp 1 0.403138492357059 1 0.74055689573288 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333425 chr1:22333419 synonymous SNV . 0 15 hm5C_associated_SNPs_2507 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 49bp
chr1 22333419 22333419 1 + T C rs138658162 22333425 + 22333405 22333445 41 GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC GCCCAGCTGGGAGACGCCGTCCAGCTCGCCTCACTCCCTCC < 41bp 1 0.403138492357059 1 0.74055689573288 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333425 chr1:22333419 synonymous SNV . 0 15 hm5C_associated_SNPs_2507 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 89bp
chr1 22333419 22333419 1 + T C rs138658162 22333426 + 22333406 22333446 41 CCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCC CCCAGCTGGGAGACGCCGTCCAGCTCGCCTCACTCCCTCCC < 41bp 1 0.565794494083443 1 0.709638297557831 experiment 0.868411011833114 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333426 chr1:22333419 synonymous SNV . 0 14 hm5C_associated_SNPs_2508 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 49bp
chr1 22333419 22333419 1 + T C rs138658162 22333426 + 22333406 22333446 41 CCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCC CCCAGCTGGGAGACGCCGTCCAGCTCGCCTCACTCCCTCCC < 41bp 1 0.565794494083443 1 0.709638297557831 experiment 0.868411011833114 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333426 chr1:22333419 synonymous SNV . 0 14 hm5C_associated_SNPs_2508 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 89bp
chr1 22333419 22333419 1 + T C rs138658162 22333429 + 22333409 22333449 41 AGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCT AGCTGGGAGACGCCGTCCAGCTCGCCTCACTCCCTCCCGCT < 41bp 1 0.624491099575359 1 0.535141348838806 experiment 0.751017800849283 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333429 chr1:22333419 synonymous SNV . 0 11 hm5C_associated_SNPs_2509 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 49bp
chr1 22333419 22333419 1 + T C rs138658162 22333429 + 22333409 22333449 41 AGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCT AGCTGGGAGACGCCGTCCAGCTCGCCTCACTCCCTCCCGCT < 41bp 1 0.624491099575359 1 0.535141348838806 experiment 0.751017800849283 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333429 chr1:22333419 synonymous SNV . 0 11 hm5C_associated_SNPs_2509 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 89bp
chr1 22333419 22333419 1 + T C rs138658162 22333431 + 22333411 22333451 41 CTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGG CTGGGAGACGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGG < 41bp 1 0.70644989434173 1 0.772534608840942 experiment 0.587100211316541 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333431 chr1:22333419 synonymous SNV . 0 9 hm5C_associated_SNPs_2510 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 49bp
chr1 22333419 22333419 1 + T C rs138658162 22333431 + 22333411 22333451 41 CTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGG CTGGGAGACGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGG < 41bp 1 0.70644989434173 1 0.772534608840942 experiment 0.587100211316541 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333431 chr1:22333419 synonymous SNV . 0 9 hm5C_associated_SNPs_2510 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 89bp
chr1 22333419 22333419 1 + T C rs138658162 22333433 + 22333413 22333453 41 GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG GGGAGACGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG < 41bp 1 0.280315258528876 1 0.164990186691284 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333433 chr1:22333419 synonymous SNV . 0 7 hm5C_associated_SNPs_2511 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 49bp
chr1 22333419 22333419 1 + T C rs138658162 22333433 + 22333413 22333453 41 GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG GGGAGACGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG < 41bp 1 0.280315258528876 1 0.164990186691284 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333433 chr1:22333419 synonymous SNV . 0 7 hm5C_associated_SNPs_2511 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 89bp
chr1 22333419 22333419 1 + T C rs138658162 22333434 + 22333414 22333454 41 GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA GGAGACGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA < 41bp 1 0.205889722092026 1 0.172382175922394 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333434 chr1:22333419 synonymous SNV . 0 6 hm5C_associated_SNPs_2512 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 49bp
chr1 22333419 22333419 1 + T C rs138658162 22333434 + 22333414 22333454 41 GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA GGAGACGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA < 41bp 1 0.205889722092026 1 0.172382175922394 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333434 chr1:22333419 synonymous SNV . 0 6 hm5C_associated_SNPs_2512 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 89bp
chr1 22333419 22333419 1 + T C rs138658162 22333436 + 22333416 22333456 41 AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA AGACGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA < 41bp 1 0.118026807641804 1 0.157663702964783 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333436 chr1:22333419 synonymous SNV . 0 4 hm5C_associated_SNPs_2513 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 49bp
chr1 22333419 22333419 1 + T C rs138658162 22333436 + 22333416 22333456 41 AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA AGACGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA < 41bp 1 0.118026807641804 1 0.157663702964783 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333436 chr1:22333419 synonymous SNV . 0 4 hm5C_associated_SNPs_2513 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 89bp
chr1 22333419 22333419 1 + T C rs138658162 22333438 + 22333418 22333458 41 ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC ACGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC < 41bp 1 0.366416467716153 1 0.115856021642685 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333438 chr1:22333419 synonymous SNV . 0 2 hm5C_associated_SNPs_2514 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 49bp
chr1 22333419 22333419 1 + T C rs138658162 22333438 + 22333418 22333458 41 ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC ACGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC < 41bp 1 0.366416467716153 1 0.115856021642685 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333438 chr1:22333419 synonymous SNV . 0 2 hm5C_associated_SNPs_2514 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 89bp
chr1 22333431 22333431 1 + C T rs149331601 22333421 + 22333401 22333441 41 CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC CAGCGCCCAGCTGGGAGATGCCGTCCAGCTTGCCTCACTCC < 41bp 1 0.0854651395716098 1 0.0705235600471497 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333421 chr1:22333431 synonymous SNV . 0 31 hm5C_associated_SNPs_2515 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 61bp
chr1 22333431 22333431 1 + C T rs149331601 22333421 + 22333401 22333441 41 CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC CAGCGCCCAGCTGGGAGATGCCGTCCAGCTTGCCTCACTCC < 41bp 1 0.0854651395716098 1 0.0705235600471497 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333421 chr1:22333431 synonymous SNV . 0 31 hm5C_associated_SNPs_2515 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 77bp
chr1 22333431 22333431 1 + C T rs149331601 22333422 + 22333402 22333442 41 AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC AGCGCCCAGCTGGGAGATGCCGTCCAGCTTGCCTCACTCCC < 41bp 1 0.298629994535729 1 0.360298305749893 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333422 chr1:22333431 synonymous SNV . 0 30 hm5C_associated_SNPs_2516 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 61bp
chr1 22333431 22333431 1 + C T rs149331601 22333422 + 22333402 22333442 41 AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC AGCGCCCAGCTGGGAGATGCCGTCCAGCTTGCCTCACTCCC < 41bp 1 0.298629994535729 1 0.360298305749893 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333422 chr1:22333431 synonymous SNV . 0 30 hm5C_associated_SNPs_2516 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 77bp
chr1 22333431 22333431 1 + C T rs149331601 22333425 + 22333405 22333445 41 GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC GCCCAGCTGGGAGATGCCGTCCAGCTTGCCTCACTCCCTCC < 41bp 1 0.468214315936015 1 0.412542104721069 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333425 chr1:22333431 synonymous SNV . 0 27 hm5C_associated_SNPs_2517 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 61bp
chr1 22333431 22333431 1 + C T rs149331601 22333425 + 22333405 22333445 41 GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC GCCCAGCTGGGAGATGCCGTCCAGCTTGCCTCACTCCCTCC < 41bp 1 0.468214315936015 1 0.412542104721069 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333425 chr1:22333431 synonymous SNV . 0 27 hm5C_associated_SNPs_2517 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 77bp
chr1 22333431 22333431 1 + C T rs149331601 22333426 + 22333406 22333446 41 CCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCC CCCAGCTGGGAGATGCCGTCCAGCTTGCCTCACTCCCTCCC < 41bp 1 0.625828146029234 1 0.50378829240799 experiment 0.748343707941531 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333426 chr1:22333431 synonymous SNV . 0 26 hm5C_associated_SNPs_2518 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 61bp
chr1 22333431 22333431 1 + C T rs149331601 22333426 + 22333406 22333446 41 CCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCC CCCAGCTGGGAGATGCCGTCCAGCTTGCCTCACTCCCTCCC < 41bp 1 0.625828146029234 1 0.50378829240799 experiment 0.748343707941531 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333426 chr1:22333431 synonymous SNV . 0 26 hm5C_associated_SNPs_2518 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 77bp
chr1 22333431 22333431 1 + C T rs149331601 22333429 + 22333409 22333449 41 AGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCT AGCTGGGAGATGCCGTCCAGCTTGCCTCACTCCCTCCCGCT < 41bp 1 0.356726908426105 1 0.245185106992722 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333429 chr1:22333431 synonymous SNV . 0 23 hm5C_associated_SNPs_2519 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 61bp
chr1 22333431 22333431 1 + C T rs149331601 22333429 + 22333409 22333449 41 AGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCT AGCTGGGAGATGCCGTCCAGCTTGCCTCACTCCCTCCCGCT < 41bp 1 0.356726908426105 1 0.245185106992722 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333429 chr1:22333431 synonymous SNV . 0 23 hm5C_associated_SNPs_2519 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 77bp
chr1 22333431 22333431 1 + C T rs149331601 22333433 + 22333413 22333453 41 GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG GGGAGATGCCGTCCAGCTTGCCTCACTCCCTCCCGCTGGTG < 41bp 1 0.263245456305846 1 0.0799324214458466 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333433 chr1:22333431 synonymous SNV . 0 19 hm5C_associated_SNPs_2520 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 61bp
chr1 22333431 22333431 1 + C T rs149331601 22333433 + 22333413 22333453 41 GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG GGGAGATGCCGTCCAGCTTGCCTCACTCCCTCCCGCTGGTG < 41bp 1 0.263245456305846 1 0.0799324214458466 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333433 chr1:22333431 synonymous SNV . 0 19 hm5C_associated_SNPs_2520 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 77bp
chr1 22333431 22333431 1 + C T rs149331601 22333434 + 22333414 22333454 41 GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA GGAGATGCCGTCCAGCTTGCCTCACTCCCTCCCGCTGGTGA < 41bp 1 0.285862618235574 1 0.105623543262482 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333434 chr1:22333431 synonymous SNV . 0 18 hm5C_associated_SNPs_2521 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 61bp
chr1 22333431 22333431 1 + C T rs149331601 22333434 + 22333414 22333454 41 GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA GGAGATGCCGTCCAGCTTGCCTCACTCCCTCCCGCTGGTGA < 41bp 1 0.285862618235574 1 0.105623543262482 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333434 chr1:22333431 synonymous SNV . 0 18 hm5C_associated_SNPs_2521 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 77bp
chr1 22333431 22333431 1 + C T rs149331601 22333436 + 22333416 22333456 41 AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA AGATGCCGTCCAGCTTGCCTCACTCCCTCCCGCTGGTGACA < 41bp 1 0.132555480063819 1 0.204719543457031 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333436 chr1:22333431 synonymous SNV . 0 16 hm5C_associated_SNPs_2522 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 61bp
chr1 22333431 22333431 1 + C T rs149331601 22333436 + 22333416 22333456 41 AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA AGATGCCGTCCAGCTTGCCTCACTCCCTCCCGCTGGTGACA < 41bp 1 0.132555480063819 1 0.204719543457031 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333436 chr1:22333431 synonymous SNV . 0 16 hm5C_associated_SNPs_2522 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 77bp
chr1 22333431 22333431 1 + C T rs149331601 22333438 + 22333418 22333458 41 ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC ATGCCGTCCAGCTTGCCTCACTCCCTCCCGCTGGTGACATC < 41bp 1 0.333038241306405 1 0.124752819538116 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333438 chr1:22333431 synonymous SNV . 0 14 hm5C_associated_SNPs_2523 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 61bp
chr1 22333431 22333431 1 + C T rs149331601 22333438 + 22333418 22333458 41 ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC ATGCCGTCCAGCTTGCCTCACTCCCTCCCGCTGGTGACATC < 41bp 1 0.333038241306405 1 0.124752819538116 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333438 chr1:22333431 synonymous SNV . 0 14 hm5C_associated_SNPs_2523 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 77bp
chr1 22333431 22333431 1 + C T rs149331601 22333440 + 22333420 22333460 41 GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT GCCGTCCAGCTTGCCTCACTCCCTCCCGCTGGTGACATCCT < 41bp 1 0.0894525407307336 1 0.0637261569499969 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333440 chr1:22333431 synonymous SNV . 0 12 hm5C_associated_SNPs_2524 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 61bp
chr1 22333431 22333431 1 + C T rs149331601 22333440 + 22333420 22333460 41 GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT GCCGTCCAGCTTGCCTCACTCCCTCCCGCTGGTGACATCCT < 41bp 1 0.0894525407307336 1 0.0637261569499969 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333440 chr1:22333431 synonymous SNV . 0 12 hm5C_associated_SNPs_2524 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 77bp
chr1 22333431 22333431 1 + C T rs149331601 22333441 + 22333421 22333461 41 CCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTT CCGTCCAGCTTGCCTCACTCCCTCCCGCTGGTGACATCCTT < 41bp 1 0.0544741650395902 1 0.0282707214355469 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333441 chr1:22333431 synonymous SNV . 0 11 hm5C_associated_SNPs_2525 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 61bp
chr1 22333431 22333431 1 + C T rs149331601 22333441 + 22333421 22333461 41 CCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTT CCGTCCAGCTTGCCTCACTCCCTCCCGCTGGTGACATCCTT < 41bp 1 0.0544741650395902 1 0.0282707214355469 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333441 chr1:22333431 synonymous SNV . 0 11 hm5C_associated_SNPs_2525 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 77bp
chr1 22333431 22333431 1 + C T rs149331601 22333442 + 22333422 22333462 41 CGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTC CGTCCAGCTTGCCTCACTCCCTCCCGCTGGTGACATCCTTC < 41bp 1 0.422477432551725 1 0.333011269569397 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333442 chr1:22333431 synonymous SNV . 0 10 hm5C_associated_SNPs_2526 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 61bp
chr1 22333431 22333431 1 + C T rs149331601 22333442 + 22333422 22333462 41 CGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTC CGTCCAGCTTGCCTCACTCCCTCCCGCTGGTGACATCCTTC < 41bp 1 0.422477432551725 1 0.333011269569397 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333442 chr1:22333431 synonymous SNV . 0 10 hm5C_associated_SNPs_2526 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 77bp
chr1 22333431 22333431 1 + C T rs149331601 22333444 + 22333424 22333464 41 TCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCC TCCAGCTTGCCTCACTCCCTCCCGCTGGTGACATCCTTCCC < 41bp 1 0.385141230756287 1 0.249746352434158 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333444 chr1:22333431 synonymous SNV . 0 8 hm5C_associated_SNPs_2527 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 61bp
chr1 22333431 22333431 1 + C T rs149331601 22333444 + 22333424 22333464 41 TCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCC TCCAGCTTGCCTCACTCCCTCCCGCTGGTGACATCCTTCCC < 41bp 1 0.385141230756287 1 0.249746352434158 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333444 chr1:22333431 synonymous SNV . 0 8 hm5C_associated_SNPs_2527 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 77bp
chr1 22333431 22333431 1 + C T rs149331601 22333445 + 22333425 22333465 41 CCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCA CCAGCTTGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCA < 41bp 1 0.292788351931317 1 0.262066870927811 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333445 chr1:22333431 synonymous SNV . 0 7 hm5C_associated_SNPs_2528 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 61bp
chr1 22333431 22333431 1 + C T rs149331601 22333445 + 22333425 22333465 41 CCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCA CCAGCTTGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCA < 41bp 1 0.292788351931317 1 0.262066870927811 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333445 chr1:22333431 synonymous SNV . 0 7 hm5C_associated_SNPs_2528 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 77bp
chr1 22333431 22333431 1 + C T rs149331601 22333446 + 22333426 22333466 41 CAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCAA CAGCTTGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCAA < 41bp 1 0.666210711472543 1 0.844981968402863 experiment 0.667578577054914 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333446 chr1:22333431 synonymous SNV . 0 6 hm5C_associated_SNPs_2529 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 61bp
chr1 22333431 22333431 1 + C T rs149331601 22333446 + 22333426 22333466 41 CAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCAA CAGCTTGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCAA < 41bp 1 0.666210711472543 1 0.844981968402863 experiment 0.667578577054914 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333446 chr1:22333431 synonymous SNV . 0 6 hm5C_associated_SNPs_2529 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 77bp
chr1 22333954 22333954 1 + C T rs74062237 22333953 + 22333933 22333973 41 CAGGTGGAACTGGTGGGGTTCCACCGTGAAGAAAACCATGG CAGGTGGAACTGGTGGGGTTCTACCGTGAAGAAAACCATGG < 41bp 1 0.352388228526957 1 0.27826252579689 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333953 chr1:22333954 synonymous SNV . 0 22 hm5C_associated_SNPs_2530 0 0 0 0 2 CELA3A chr1:22333866 3'AG 22333866 Downstream 89bp
chr1 22333954 22333954 1 + C T rs74062237 22333953 + 22333933 22333973 41 CAGGTGGAACTGGTGGGGTTCCACCGTGAAGAAAACCATGG CAGGTGGAACTGGTGGGGTTCTACCGTGAAGAAAACCATGG < 41bp 1 0.352388228526957 1 0.27826252579689 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333953 chr1:22333954 synonymous SNV . 0 22 hm5C_associated_SNPs_2530 0 0 0 0 2 CELA3A chr1:22334008 5'GT 22334008 Upstream 55bp
chr1 22333954 22333954 1 + C T rs74062237 22333956 + 22333936 22333976 41 GTGGAACTGGTGGGGTTCCACCGTGAAGAAAACCATGGTGT GTGGAACTGGTGGGGTTCTACCGTGAAGAAAACCATGGTGT < 41bp 1 0.484654012612817 1 0.567953586578369 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333956 chr1:22333954 synonymous SNV . 0 19 hm5C_associated_SNPs_2531 0 0 0 0 2 CELA3A chr1:22333866 3'AG 22333866 Downstream 89bp
chr1 22333954 22333954 1 + C T rs74062237 22333956 + 22333936 22333976 41 GTGGAACTGGTGGGGTTCCACCGTGAAGAAAACCATGGTGT GTGGAACTGGTGGGGTTCTACCGTGAAGAAAACCATGGTGT < 41bp 1 0.484654012612817 1 0.567953586578369 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333956 chr1:22333954 synonymous SNV . 0 19 hm5C_associated_SNPs_2531 0 0 0 0 2 CELA3A chr1:22334008 5'GT 22334008 Upstream 55bp
chr1 22333954 22333954 1 + C T rs74062237 22333968 + 22333948 22333988 41 GGGTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGT GGGTTCTACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGT < 41bp 1 0.195144750916502 1 0.309193313121796 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333968 chr1:22333954 synonymous SNV . 0 7 hm5C_associated_SNPs_2532 0 0 0 0 2 CELA3A chr1:22333866 3'AG 22333866 Downstream 89bp
chr1 22333954 22333954 1 + C T rs74062237 22333968 + 22333948 22333988 41 GGGTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGT GGGTTCTACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGT < 41bp 1 0.195144750916502 1 0.309193313121796 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333968 chr1:22333954 synonymous SNV . 0 7 hm5C_associated_SNPs_2532 0 0 0 0 2 CELA3A chr1:22334008 5'GT 22334008 Upstream 55bp
chr1 22333954 22333954 1 + C T rs74062237 22333969 + 22333949 22333989 41 GGTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGTA GGTTCTACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGTA < 41bp 1 0.642683905951462 1 0.319608509540558 experiment 0.714632188097076 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333969 chr1:22333954 synonymous SNV . 0 6 hm5C_associated_SNPs_2533 0 0 0 0 2 CELA3A chr1:22333866 3'AG 22333866 Downstream 89bp
chr1 22333954 22333954 1 + C T rs74062237 22333969 + 22333949 22333989 41 GGTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGTA GGTTCTACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGTA < 41bp 1 0.642683905951462 1 0.319608509540558 experiment 0.714632188097076 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333969 chr1:22333954 synonymous SNV . 0 6 hm5C_associated_SNPs_2533 0 0 0 0 2 CELA3A chr1:22334008 5'GT 22334008 Upstream 55bp
chr1 22333988 22333988 1 + T C rs112024506 22333968 + 22333948 22333988 41 GGGTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGT GGGTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGC < 41bp 1 0.237118387666978 1 0.29985111951828 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333968 chr1:22333988 nonsynonymous SNV 0.010 1 41 hm5C_associated_SNPs_2534 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 21bp
chr1 22333988 22333988 1 + T C rs112024506 22333969 + 22333949 22333989 41 GGTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGTA GGTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGCA < 41bp 1 0.609026671855447 1 0.333114892244339 experiment 0.781946656289106 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333969 chr1:22333988 nonsynonymous SNV 0.010 1 40 hm5C_associated_SNPs_2535 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 21bp
chr1 22333988 22333988 1 + T C rs112024506 22333990 + 22333970 22334010 41 ATGGTGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGT ATGGTGTGTGCTGGAGGGCACATCCGCTCCGGCTGCAACGT < 41bp 1 0.217200953344819 1 0.0748099684715271 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333990 chr1:22333988 nonsynonymous SNV 0.010 1 19 hm5C_associated_SNPs_2536 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 21bp
chr1 22333988 22333988 1 + T C rs112024506 22333993 + 22333973 22334013 41 GTGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAG GTGTGTGCTGGAGGGCACATCCGCTCCGGCTGCAACGTGAG < 41bp 1 0.399953363035718 1 0.189060270786285 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333993 chr1:22333988 nonsynonymous SNV 0.010 1 16 hm5C_associated_SNPs_2537 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 21bp
chr1 22333988 22333988 1 + T C rs112024506 22333994 + 22333974 22334014 41 TGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAGT TGTGTGCTGGAGGGCACATCCGCTCCGGCTGCAACGTGAGT < 41bp 1 0.31476204921958 1 0.475503265857697 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333994 chr1:22333988 nonsynonymous SNV 0.010 1 15 hm5C_associated_SNPs_2538 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 21bp
chr1 22333988 22333988 1 + T C rs112024506 22333998 + 22333978 22334018 41 TGCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAGTCAGC TGCTGGAGGGCACATCCGCTCCGGCTGCAACGTGAGTCAGC < 41bp 1 0.407264900821319 1 0.433722317218781 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333998 chr1:22333988 nonsynonymous SNV 0.010 1 11 hm5C_associated_SNPs_2539 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 21bp
chr1 22333988 22333988 1 + T C rs112024506 22333999 + 22333979 22334019 41 GCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAGTCAGCT GCTGGAGGGCACATCCGCTCCGGCTGCAACGTGAGTCAGCT < 41bp 1 0.503014825783075 1 0.312023371458054 experiment 0.99397034843385 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333999 chr1:22333988 nonsynonymous SNV 0.010 1 10 hm5C_associated_SNPs_2540 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 21bp
chr1 22333988 22333988 1 + T C rs112024506 22334002 + 22333982 22334022 41 GGAGGGTACATCCGCTCCGGCTGCAACGTGAGTCAGCTCTT GGAGGGCACATCCGCTCCGGCTGCAACGTGAGTCAGCTCTT < 41bp 1 0.693087727479435 1 0.297299236059189 experiment 0.61382454504113 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22334002 chr1:22333988 nonsynonymous SNV 0.010 1 7 hm5C_associated_SNPs_2541 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 21bp
chr1 22333988 22333988 1 + T C rs112024506 22334005 + 22333985 22334025 41 GGGTACATCCGCTCCGGCTGCAACGTGAGTCAGCTCTTACC GGGCACATCCGCTCCGGCTGCAACGTGAGTCAGCTCTTACC < 41bp 1 0.51666476563458 1 0.253784865140915 experiment 0.966670468730841 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22334005 chr1:22333988 nonsynonymous SNV 0.010 1 4 hm5C_associated_SNPs_2542 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 21bp
chr1 22336277 22336277 1 + C G rs3820285 22336262 + 22336242 22336282 41 CTGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTG CTGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGGCTTTG < 41bp 1 0.276471422930596 1 0.112695962190628 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336262 chr1:22336277 nonsynonymous SNV 0.001 0 36 hm5C_associated_SNPs_2543 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 74bp
chr1 22336277 22336277 1 + C G rs3820285 22336263 + 22336243 22336283 41 TGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGG TGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGGCTTTGG < 41bp 1 0.610339279942977 1 0.190015941858292 experiment 0.779321440114046 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336263 chr1:22336277 nonsynonymous SNV 0.001 0 35 hm5C_associated_SNPs_2544 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 74bp
chr1 22336277 22336277 1 + C G rs3820285 22336266 + 22336246 22336286 41 CAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTG CAGGTCCACGGTGTGACCAGCTTTGTTTCTGGCTTTGGCTG < 41bp 1 0.150353314785296 1 0.13359597325325 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336266 chr1:22336277 nonsynonymous SNV 0.001 0 32 hm5C_associated_SNPs_2545 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 74bp
chr1 22336277 22336277 1 + C G rs3820285 22336274 + 22336254 22336294 41 CGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCA CGGTGTGACCAGCTTTGTTTCTGGCTTTGGCTGCAACTTCA < 41bp 1 0.741269710264977 1 0.245575845241547 experiment 0.517460579470046 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336274 chr1:22336277 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_2546 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 74bp
chr1 22336277 22336277 1 + C G rs3820285 22336278 + 22336258 22336298 41 GTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCTG GTGACCAGCTTTGTTTCTGGCTTTGGCTGCAACTTCATCTG < 41bp 1 0.302802174175912 1 0.0585439205169678 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336278 chr1:22336277 nonsynonymous SNV 0.001 0 20 hm5C_associated_SNPs_2547 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 74bp
chr1 22336277 22336277 1 + C G rs3820285 22336287 + 22336267 22336307 41 TTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCAC TTTGTTTCTGGCTTTGGCTGCAACTTCATCTGGAAGCCCAC < 41bp 1 0.243801063684443 1 0.0644423365592957 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336287 chr1:22336277 nonsynonymous SNV 0.001 0 11 hm5C_associated_SNPs_2548 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 74bp
chr1 22336277 22336277 1 + C G rs3820285 22336290 + 22336270 22336310 41 GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT GTTTCTGGCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT < 41bp 1 0.644512053793235 1 0.865264296531677 experiment 0.710975892413531 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336290 chr1:22336277 nonsynonymous SNV 0.001 0 8 hm5C_associated_SNPs_2549 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 74bp
chr1 22336277 22336277 1 + C G rs3820285 22336293 + 22336273 22336313 41 TCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGTGTT TCTGGCTTTGGCTGCAACTTCATCTGGAAGCCCACGGTGTT < 41bp 1 0.349062983987309 1 0.540176331996918 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336293 chr1:22336277 nonsynonymous SNV 0.001 0 5 hm5C_associated_SNPs_2550 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 74bp
chr1 22336305 22336305 1 + C T rs9187 22336287 + 22336267 22336307 41 TTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCAC TTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCTAC < 41bp 1 0.196817667234405 1 0.083793431520462 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336287 chr1:22336305 synonymous SNV . 0 39 hm5C_associated_SNPs_2551 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 46bp
chr1 22336305 22336305 1 + C T rs9187 22336290 + 22336270 22336310 41 GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCTACGGT < 41bp 1 0.528818698609287 1 0.712820172309875 experiment 0.942362602781426 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336290 chr1:22336305 synonymous SNV . 0 36 hm5C_associated_SNPs_2552 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 46bp
chr1 22336305 22336305 1 + C T rs9187 22336293 + 22336273 22336313 41 TCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGTGTT TCTGCCTTTGGCTGCAACTTCATCTGGAAGCCTACGGTGTT < 41bp 1 0.310952819955895 1 0.295841813087463 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336293 chr1:22336305 synonymous SNV . 0 33 hm5C_associated_SNPs_2553 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 46bp
chr1 22336305 22336305 1 + C T rs9187 22336303 + 22336283 22336323 41 GCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTC GCTGCAACTTCATCTGGAAGCCTACGGTGTTCACTCGAGTC < 41bp 1 0.0741399035579947 1 0.179638296365738 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336303 chr1:22336305 synonymous SNV . 0 23 hm5C_associated_SNPs_2554 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 46bp
chr1 22336305 22336305 1 + C T rs9187 22336304 + 22336284 22336324 41 CTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCT CTGCAACTTCATCTGGAAGCCTACGGTGTTCACTCGAGTCT < 41bp 1 0.572905283952136 1 0.244585067033768 experiment 0.854189432095728 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336304 chr1:22336305 synonymous SNV . 0 22 hm5C_associated_SNPs_2555 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 46bp
chr1 22336305 22336305 1 + C T rs9187 22336307 + 22336287 22336327 41 CAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCG CAACTTCATCTGGAAGCCTACGGTGTTCACTCGAGTCTCCG < 41bp 1 0.420996887698399 1 0.266249895095825 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336307 chr1:22336305 synonymous SNV . 0 19 hm5C_associated_SNPs_2556 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 46bp
chr1 22336305 22336305 1 + C T rs9187 22336314 + 22336294 22336334 41 ATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCAT ATCTGGAAGCCTACGGTGTTCACTCGAGTCTCCGCCTTCAT < 41bp 1 0.326647568372168 1 0.0207001864910126 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336314 chr1:22336305 synonymous SNV . 0 12 hm5C_associated_SNPs_2557 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 46bp
chr1 22336305 22336305 1 + C T rs9187 22336318 + 22336298 22336338 41 GGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGAC GGAAGCCTACGGTGTTCACTCGAGTCTCCGCCTTCATCGAC < 41bp 1 0.782349131530389 1 0.366067171096802 experiment 0.435301736939222 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336318 chr1:22336305 synonymous SNV . 0 8 hm5C_associated_SNPs_2558 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 46bp
chr1 22336305 22336305 1 + C T rs9187 22336323 + 22336303 22336343 41 CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT CCTACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT < 41bp 1 0.657922312514236 1 0.190092116594315 experiment 0.684155374971527 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336323 chr1:22336305 synonymous SNV . 0 3 hm5C_associated_SNPs_2559 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 46bp
chr1 22336308 22336308 1 + G A rs12908 22336290 + 22336270 22336310 41 GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACAGT < 41bp 1 0.555479453266782 1 0.757088661193848 experiment 0.889041093466436 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336290 chr1:22336308 synonymous SNV . 0 39 hm5C_associated_SNPs_2560 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 43bp
chr1 22336308 22336308 1 + G A rs12908 22336293 + 22336273 22336313 41 TCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGTGTT TCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACAGTGTT < 41bp 1 0.291980471343858 1 0.391367435455322 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336293 chr1:22336308 synonymous SNV . 0 36 hm5C_associated_SNPs_2561 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 43bp
chr1 22336308 22336308 1 + G A rs12908 22336303 + 22336283 22336323 41 GCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTC GCTGCAACTTCATCTGGAAGCCCACAGTGTTCACTCGAGTC < 41bp 1 0.140969624027406 1 0.151550829410553 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336303 chr1:22336308 synonymous SNV . 0 26 hm5C_associated_SNPs_2562 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 43bp
chr1 22336308 22336308 1 + G A rs12908 22336304 + 22336284 22336324 41 CTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCT CTGCAACTTCATCTGGAAGCCCACAGTGTTCACTCGAGTCT < 41bp 1 0.457091087056085 1 0.172945737838745 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336304 chr1:22336308 synonymous SNV . 0 25 hm5C_associated_SNPs_2563 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 43bp
chr1 22336308 22336308 1 + G A rs12908 22336305 + 22336285 22336325 41 TGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTC TGCAACTTCATCTGGAAGCCCACAGTGTTCACTCGAGTCTC < 41bp 1 0.56180164220317 1 0.115579009056091 experiment 0.87639671559366 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336305 chr1:22336308 synonymous SNV . 0 24 hm5C_associated_SNPs_2564 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 43bp
chr1 22336308 22336308 1 + G A rs12908 22336307 + 22336287 22336327 41 CAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCG CAACTTCATCTGGAAGCCCACAGTGTTCACTCGAGTCTCCG < 41bp 1 0.374711507416639 1 0.187744170427322 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336307 chr1:22336308 synonymous SNV . 0 22 hm5C_associated_SNPs_2565 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 43bp
chr1 22336308 22336308 1 + G A rs12908 22336314 + 22336294 22336334 41 ATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCAT ATCTGGAAGCCCACAGTGTTCACTCGAGTCTCCGCCTTCAT < 41bp 1 0.3673513011008 1 0.00991225242614746 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336314 chr1:22336308 synonymous SNV . 0 15 hm5C_associated_SNPs_2566 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 43bp
chr1 22336308 22336308 1 + G A rs12908 22336318 + 22336298 22336338 41 GGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGAC GGAAGCCCACAGTGTTCACTCGAGTCTCCGCCTTCATCGAC < 41bp 1 0.731264413200012 1 0.295582056045532 experiment 0.537471173599976 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336318 chr1:22336308 synonymous SNV . 0 11 hm5C_associated_SNPs_2567 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 43bp
chr1 22336308 22336308 1 + G A rs12908 22336323 + 22336303 22336343 41 CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT CCCACAGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT < 41bp 1 0.624091128244105 1 0.196861177682877 experiment 0.751817743511791 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336323 chr1:22336308 synonymous SNV . 0 6 hm5C_associated_SNPs_2568 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 43bp
chr1 22336308 22336308 1 + G A rs12908 22336326 + 22336306 22336346 41 ACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGA ACAGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGA < 41bp 1 0.403881634741266 1 0.030836820602417 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336326 chr1:22336308 synonymous SNV . 0 3 hm5C_associated_SNPs_2569 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 43bp
chr1 23240175 23240175 1 + C T rs574015572 23240157 + 23240137 23240177 41 TCTATCCACTGCAGGGCCAGCCACTCGCCAGGAGGCCACGG TCTATCCACTGCAGGGCCAGCCACTCGCCAGGAGGCCATGG < 41bp 1 0.124349893680543 1 0.158546566963196 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23240157 chr1:23240175 nonsynonymous SNV 0.903 1 39 hm5C_associated_SNPs_2571 0 0 0 0 1 EPHB2 chr1:23240151 3'AG 23240151 Downstream 25bp
chr1 24018307 24018307 1 + C T rs202059289 24018298 + 24018278 24018318 41 GGCCGGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGC GGCCGGAAGCTCCGCTTTCTCTTCCTGCTTTCCATCATGGC < 41bp 1 0.401421385473032 1 0.709935426712036 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL11 ENSG00000142676 UTR5 Human protein_coding chr1:24018298 chr1:24018307 . . 0 30 hm5C_associated_SNPs_2572 0 0 1 0 1 RPL11 chr1:24018319 5'GT 24018319 Upstream 13bp
chr1 24018307 24018307 1 + C T rs202059289 24018301 + 24018281 24018321 41 CGGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGCGGT CGGAAGCTCCGCTTTCTCTTCCTGCTTTCCATCATGGCGGT < 41bp 1 0.355608337921516 1 0.384294778108597 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL11 ENSG00000142676 UTR5 Human protein_coding chr1:24018301 chr1:24018307 . . 0 27 hm5C_associated_SNPs_2573 0 0 1 0 1 RPL11 chr1:24018319 5'GT 24018319 Upstream 13bp
chr1 24018307 24018307 1 + C T rs202059289 24018302 + 24018282 24018322 41 GGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGCGGTG GGAAGCTCCGCTTTCTCTTCCTGCTTTCCATCATGGCGGTG < 41bp 1 0.481865606035982 1 0.120418071746826 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL11 ENSG00000142676 UTR5 Human protein_coding chr1:24018302 chr1:24018307 . . 0 26 hm5C_associated_SNPs_2574 0 0 1 0 1 RPL11 chr1:24018319 5'GT 24018319 Upstream 13bp
chr1 24019194 24019194 1 + G A rs199772693 24019185 + 24019165 24019205 41 TGTGTTGGGGAGAGTGGAGACAGACTGACGCGAGCAGCCAA TGTGTTGGGGAGAGTGGAGACAGACTGACACGAGCAGCCAA < 41bp 1 0.790692798623256 1 0.279988378286362 experiment 0.418614402753489 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24019185 chr1:24019194 synonymous SNV . 0 30 hm5C_associated_SNPs_2575 1 0 1 0 3 RPL11 chr1:24019099 3'AG 24019099 Downstream 96bp
chr1 24019194 24019194 1 + G A rs199772693 24019185 + 24019165 24019205 41 TGTGTTGGGGAGAGTGGAGACAGACTGACGCGAGCAGCCAA TGTGTTGGGGAGAGTGGAGACAGACTGACACGAGCAGCCAA < 41bp 1 0.790692798623256 1 0.279988378286362 experiment 0.418614402753489 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24019185 chr1:24019194 synonymous SNV . 0 30 hm5C_associated_SNPs_2575 1 0 1 0 3 RPL11 chr1:24019102 3'AG 24019102 Downstream 93bp
chr1 24019194 24019194 1 + G A rs199772693 24019185 + 24019165 24019205 41 TGTGTTGGGGAGAGTGGAGACAGACTGACGCGAGCAGCCAA TGTGTTGGGGAGAGTGGAGACAGACTGACACGAGCAGCCAA < 41bp 1 0.790692798623256 1 0.279988378286362 experiment 0.418614402753489 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24019185 chr1:24019194 synonymous SNV . 0 30 hm5C_associated_SNPs_2575 1 0 1 0 3 RPL11 chr1:24019249 5'GT 24019249 Upstream 56bp
chr1 24020352 24020352 1 + C T rs562572818 24020369 + 24020349 24020389 41 CCACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGG CCATTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGG < 41bp 1 0.127432758184907 1 0.422713965177536 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24020369 chr1:24020352 synonymous SNV . 0 4 hm5C_associated_SNPs_2576 0 0 1 0 2 RPL11 chr1:24020297 3'AG 24020297 Downstream 56bp
chr1 24020352 24020352 1 + C T rs562572818 24020369 + 24020349 24020389 41 CCACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGG CCATTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGG < 41bp 1 0.127432758184907 1 0.422713965177536 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24020369 chr1:24020352 synonymous SNV . 0 4 hm5C_associated_SNPs_2576 0 0 1 0 2 RPL11 chr1:24020403 5'GT 24020403 Upstream 52bp
chr1 24020352 24020352 1 + C T rs562572818 24020370 + 24020350 24020390 41 CACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGGA CATTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGGA < 41bp 1 0.625269027220879 1 0.363244444131851 experiment 0.749461945558243 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24020370 chr1:24020352 synonymous SNV . 0 3 hm5C_associated_SNPs_2577 0 0 1 0 2 RPL11 chr1:24020297 3'AG 24020297 Downstream 56bp
chr1 24020352 24020352 1 + C T rs562572818 24020370 + 24020350 24020390 41 CACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGGA CATTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGGA < 41bp 1 0.625269027220879 1 0.363244444131851 experiment 0.749461945558243 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24020370 chr1:24020352 synonymous SNV . 0 3 hm5C_associated_SNPs_2577 0 0 1 0 2 RPL11 chr1:24020403 5'GT 24020403 Upstream 52bp
chr1 24668716 24668716 1 + C A rs147284380 24668711 + 24668691 24668731 41 CTATGACTGTGGCTTGGGCACTGAGCGCCTGGTACACCGTG CTATGACTGTGGCTTGGGCACTGAGAGCCTGGTACACCGTG < 41bp 1 0.674036388766078 1 0.284115552902222 experiment 0.651927222467845 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24668711 chr1:24668716 nonsynonymous SNV 0.948 1 26 hm5C_associated_SNPs_2582 0 0 0 0 1 GRHL3 chr1:24668763 5'GT 24668763 Upstream 48bp
chr1 24782710 24782710 1 + C T rs117938741 24782707 + 24782687 24782727 41 GGGAACCTGCAGCTTGACTACCCCATCTTCTACGTGATGTT GGGAACCTGCAGCTTGACTACCCTATCTTCTACGTGATGTT < 41bp 1 0.224180170676473 1 0.0536659061908722 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NIPAL3 ENSG00000001461 CDS Human protein_coding chr1:24782707 chr1:24782710 synonymous SNV . 0 24 hm5C_associated_SNPs_2583 0 0 1 0 1 NIPAL3 chr1:24782763 5'GT 24782763 Upstream 54bp
chr1 24996669 24996669 1 + G A rs149380642 24996652 + 24996632 24996672 41 GTCTGTAAGAAGGGTCTCATCCTCCCGATCTGTCTCCGGGT GTCTGTAAGAAGGGTCTCATCCTCCCGATCTGTCTCCAGGT < 41bp 1 0.189915150624096 1 0.0336529314517975 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996652 chr1:24996669 nonsynonymous SNV 0.928 2 38 hm5C_associated_SNPs_2585 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 59bp
chr1 24996669 24996669 1 + G A rs149380642 24996653 + 24996633 24996673 41 TCTGTAAGAAGGGTCTCATCCTCCCGATCTGTCTCCGGGTC TCTGTAAGAAGGGTCTCATCCTCCCGATCTGTCTCCAGGTC < 41bp 1 0.766897553360305 1 0.214116185903549 experiment 0.466204893279391 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996653 chr1:24996669 nonsynonymous SNV 0.928 2 37 hm5C_associated_SNPs_2586 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 59bp
chr1 24996669 24996669 1 + G A rs149380642 24996673 + 24996653 24996693 41 CTCCCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAA CTCCCGATCTGTCTCCAGGTCTCCTGAGCCAGCAGCTAAAA < 41bp 1 0.601506507103311 1 0.0610335469245911 experiment 0.796986985793378 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996673 chr1:24996669 nonsynonymous SNV 0.928 2 17 hm5C_associated_SNPs_2587 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 59bp
chr1 24996669 24996669 1 + G A rs149380642 24996676 + 24996656 24996696 41 CCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGC CCGATCTGTCTCCAGGTCTCCTGAGCCAGCAGCTAAAAAGC < 41bp 1 0.569464261559458 1 0.231839954853058 experiment 0.861071476881084 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996676 chr1:24996669 nonsynonymous SNV 0.928 2 14 hm5C_associated_SNPs_2588 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 59bp
chr1 24996669 24996669 1 + G A rs149380642 24996681 + 24996661 24996701 41 CTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCA CTGTCTCCAGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCA < 41bp 1 0.209712126996112 1 0.531815648078918 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996681 chr1:24996669 nonsynonymous SNV 0.928 2 9 hm5C_associated_SNPs_2589 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 59bp
chr1 24996669 24996669 1 + G A rs149380642 24996688 + 24996668 24996708 41 CGGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTC CAGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTC < 41bp 1 0.617960239356578 1 0.60322368144989 experiment 0.764079521286844 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996688 chr1:24996669 nonsynonymous SNV 0.928 2 2 hm5C_associated_SNPs_2590 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 59bp
chr1 26080052 26080052 1 + C T rs12073358 26080043 + 26080023 26080063 41 TTCAACACCCCCACGGGAATCCCAAAGGGCGTGGTGAGCTT TTCAACACCCCCACGGGAATCCCAAAGGGTGTGGTGAGCTT < 41bp 1 0.484488596266818 1 0.31877475976944 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26080043 chr1:26080052 synonymous SNV . 0 30 hm5C_associated_SNPs_2594 0 0 0 0 2 MAN1C1 chr1:26079975 3'AG 26079975 Downstream 78bp
chr1 26080052 26080052 1 + C T rs12073358 26080043 + 26080023 26080063 41 TTCAACACCCCCACGGGAATCCCAAAGGGCGTGGTGAGCTT TTCAACACCCCCACGGGAATCCCAAAGGGTGTGGTGAGCTT < 41bp 1 0.484488596266818 1 0.31877475976944 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26080043 chr1:26080052 synonymous SNV . 0 30 hm5C_associated_SNPs_2594 0 0 0 0 2 MAN1C1 chr1:26080069 5'GT 26080069 Upstream 18bp
chr1 26109105 26109105 1 + C T rs370236094 26109121 + 26109101 26109141 41 AAGCCGGTTTCTCTGGGATCCAAGACGTGTACAGTAGCACC AAGCTGGTTTCTCTGGGATCCAAGACGTGTACAGTAGCACC < 41bp 1 0.583507123062144 1 0.794283330440521 experiment 0.832985753875712 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26109121 chr1:26109105 synonymous SNV 0.624 0 5 hm5C_associated_SNPs_2595 0 0 0 0 2 MAN1C1 chr1:26109076 3'AG 26109076 Downstream 30bp
chr1 26109105 26109105 1 + C T rs370236094 26109121 + 26109101 26109141 41 AAGCCGGTTTCTCTGGGATCCAAGACGTGTACAGTAGCACC AAGCTGGTTTCTCTGGGATCCAAGACGTGTACAGTAGCACC < 41bp 1 0.583507123062144 1 0.794283330440521 experiment 0.832985753875712 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26109121 chr1:26109105 synonymous SNV 0.624 0 5 hm5C_associated_SNPs_2595 0 0 0 0 2 MAN1C1 chr1:26109191 5'GT 26109191 Upstream 87bp
chr1 26109126 26109126 1 + C T rs150201998 26109121 + 26109101 26109141 41 AAGCCGGTTTCTCTGGGATCCAAGACGTGTACAGTAGCACC AAGCCGGTTTCTCTGGGATCCAAGATGTGTACAGTAGCACC < 41bp 1 0.670461350355968 1 0.804724454879761 experiment 0.659077299288064 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26109121 chr1:26109126 synonymous SNV 0.698 0 26 hm5C_associated_SNPs_2596 0 0 1 0 2 MAN1C1 chr1:26109076 3'AG 26109076 Downstream 51bp
chr1 26109126 26109126 1 + C T rs150201998 26109121 + 26109101 26109141 41 AAGCCGGTTTCTCTGGGATCCAAGACGTGTACAGTAGCACC AAGCCGGTTTCTCTGGGATCCAAGATGTGTACAGTAGCACC < 41bp 1 0.670461350355968 1 0.804724454879761 experiment 0.659077299288064 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26109121 chr1:26109126 synonymous SNV 0.698 0 26 hm5C_associated_SNPs_2596 0 0 1 0 2 MAN1C1 chr1:26109191 5'GT 26109191 Upstream 66bp
chr1 26135083 26135083 1 + G A rs199742668 26135073 + 26135053 26135093 41 TGCTTTCCCCCGCCCCAGGTCTCCCGCCTCGCCCTGTCCGG TGCTTTCCCCCGCCCCAGGTCTCCCGCCTCACCCTGTCCGG < 41bp 1 0.278408631621769 1 0.142857044935226 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26135073 chr1:26135083 nonsynonymous SNV 0.794 2 31 hm5C_associated_SNPs_2597 0 0 0 0 1 SELENON chr1:26135071 3'AG 26135071 Downstream 13bp
chr1 26136282 26136282 1 + C T rs147587542 26136269 + 26136249 26136289 41 CATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCC CATCATCCTCTCCAAAGACGCCACCCACGTCCGTGACTTCC < 41bp 1 0.0411652053269671 1 0.088612824678421 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136269 chr1:26136282 synonymous SNV . 0 34 hm5C_associated_SNPs_2598 2 0 1 0 1 SELENON chr1:26136311 5'GT 26136311 Upstream 30bp
chr1 26136282 26136282 1 + C T rs147587542 26136270 + 26136250 26136290 41 ATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCG ATCATCCTCTCCAAAGACGCCACCCACGTCCGTGACTTCCG < 41bp 1 0.126922100899751 1 0.0567625761032104 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136270 chr1:26136282 synonymous SNV . 0 33 hm5C_associated_SNPs_2599 2 0 1 0 1 SELENON chr1:26136311 5'GT 26136311 Upstream 30bp
chr1 26136282 26136282 1 + C T rs147587542 26136273 + 26136253 26136293 41 ATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCT ATCCTCTCCAAAGACGCCACCCACGTCCGTGACTTCCGGCT < 41bp 1 0.0966846016824895 1 0.0679886937141418 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136273 chr1:26136282 synonymous SNV . 0 30 hm5C_associated_SNPs_2600 2 0 1 0 1 SELENON chr1:26136311 5'GT 26136311 Upstream 30bp
chr1 26136282 26136282 1 + C T rs147587542 26136274 + 26136254 26136294 41 TCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCTC TCCTCTCCAAAGACGCCACCCACGTCCGTGACTTCCGGCTC < 41bp 1 0.509266004932944 1 0.080597460269928 experiment 0.981467990134112 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136274 chr1:26136282 synonymous SNV . 0 29 hm5C_associated_SNPs_2601 2 0 1 0 1 SELENON chr1:26136311 5'GT 26136311 Upstream 30bp
chr1 26596080 26596080 1 + G A rs7550997 26596093 + 26596073 26596113 41 GAGAGAAGCAGAATTCTCCTCCGCTGGACATAGGTAAATAA GAGAGAAACAGAATTCTCCTCCGCTGGACATAGGTAAATAA < 41bp 1 0.156107143369779 1 0.247740805149078 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP85 ENSG00000130695 CDS Human protein_coding chr1:26596093 chr1:26596080 nonsynonymous SNV 0.465 0 8 hm5C_associated_SNPs_2610 0 0 1 0 1 CEP85 chr1:26596105 5'GT 26596105 Upstream 26bp
chr1 26596095 26596095 1 + G A rs76880849 26596093 + 26596073 26596113 41 GAGAGAAGCAGAATTCTCCTCCGCTGGACATAGGTAAATAA GAGAGAAGCAGAATTCTCCTCCACTGGACATAGGTAAATAA < 41bp 1 0.111218471551677 1 0.255843371152878 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP85 ENSG00000130695 CDS Human protein_coding chr1:26596093 chr1:26596095 nonsynonymous SNV 0.010 0 23 hm5C_associated_SNPs_2611 0 0 1 0 1 CEP85 chr1:26596105 5'GT 26596105 Upstream 11bp
chr1 26596096 26596096 1 + C T rs183440117 26596093 + 26596073 26596113 41 GAGAGAAGCAGAATTCTCCTCCGCTGGACATAGGTAAATAA GAGAGAAGCAGAATTCTCCTCCGTTGGACATAGGTAAATAA < 41bp 1 0.079615325847861 1 0.298396348953247 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP85 ENSG00000130695 CDS Human protein_coding chr1:26596093 chr1:26596096 nonsynonymous SNV 0.181 1 24 hm5C_associated_SNPs_2612 0 0 1 0 1 CEP85 chr1:26596105 5'GT 26596105 Upstream 10bp
chr1 26597521 26597521 1 + T G rs140332904 26597518 + 26597498 26597538 41 CTTTCAGCCTGCAAGATAAACAGTCTGTGGAGGAGACCAGT CTTTCAGCCTGCAAGATAAACAGGCTGTGGAGGAGACCAGT < 41bp 1 0.540416886140871 1 0.722316086292267 experiment 0.919166227718257 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEP85 ENSG00000130695 CDS Human protein_coding chr1:26597518 chr1:26597521 nonsynonymous SNV 0.940 0 24 hm5C_associated_SNPs_2613 0 0 1 0 2 CEP85 chr1:26597505 3'AG 26597505 Downstream 17bp
chr1 26597521 26597521 1 + T G rs140332904 26597518 + 26597498 26597538 41 CTTTCAGCCTGCAAGATAAACAGTCTGTGGAGGAGACCAGT CTTTCAGCCTGCAAGATAAACAGGCTGTGGAGGAGACCAGT < 41bp 1 0.540416886140871 1 0.722316086292267 experiment 0.919166227718257 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEP85 ENSG00000130695 CDS Human protein_coding chr1:26597518 chr1:26597521 nonsynonymous SNV 0.940 0 24 hm5C_associated_SNPs_2613 0 0 1 0 2 CEP85 chr1:26597598 5'GT 26597598 Upstream 78bp
chr1 26607632 26607632 1 + T C rs116476745 26607647 + 26607627 26607667 41 CAGAGTTCCCCTGCTGGACTCCATCACCACACTCCCCCCAG CAGAGCTCCCCTGCTGGACTCCATCACCACACTCCCCCCAG < 41bp 1 0.128940453607785 1 0.23531237244606 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SH3BGRL3 ENSG00000142669 UTR3 Human protein_coding chr1:26607647 chr1:26607632 . . 0 6 hm5C_associated_SNPs_2616 0 0 1 0 1 SH3BGRL3 chr1:26607549 3'AG 26607549 Downstream 84bp
chr1 26607632 26607632 1 + T C rs116476745 26607648 + 26607628 26607668 41 AGAGTTCCCCTGCTGGACTCCATCACCACACTCCCCCCAGC AGAGCTCCCCTGCTGGACTCCATCACCACACTCCCCCCAGC < 41bp 1 0.47548090624109 1 0.352783143520355 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SH3BGRL3 ENSG00000142669 UTR3 Human protein_coding chr1:26607648 chr1:26607632 . . 0 5 hm5C_associated_SNPs_2617 0 0 1 0 1 SH3BGRL3 chr1:26607549 3'AG 26607549 Downstream 84bp
chr1 26883511 26883511 1 + A C rs2229712 26883509 + 26883489 26883529 41 AAGCTATACCGTCGTGAGATCAAGCCACCCTTCAAGCCAGC AAGCTATACCGTCGTGAGATCACGCCACCCTTCAAGCCAGC < 41bp 1 0.312259409820983 1 0.629072785377502 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26883509 chr1:26883511 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_2618 0 0 1 0 1 RPS6KA1 chr1:26883489 3'AG 26883489 Downstream 23bp
chr1 27088719 27088719 1 + T C rs564495050 27088714 + 27088694 27088734 41 GCTCAGCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA GCTCAGCCTTATCTCCGCGTCAGCCCTCCGGAGGACAGATA < 41bp 1 0.183032596058617 1 0.103920996189117 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27088714 chr1:27088719 synonymous SNV . 0 26 hm5C_associated_SNPs_2626 0 0 1 0 2 ARID1A chr1:27088643 3'AG 27088643 Downstream 77bp
chr1 27088719 27088719 1 + T C rs564495050 27088714 + 27088694 27088734 41 GCTCAGCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA GCTCAGCCTTATCTCCGCGTCAGCCCTCCGGAGGACAGATA < 41bp 1 0.183032596058617 1 0.103920996189117 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27088714 chr1:27088719 synonymous SNV . 0 26 hm5C_associated_SNPs_2626 0 0 1 0 2 ARID1A chr1:27088810 5'GT 27088810 Upstream 92bp
chr1 27269164 27269164 1 + A G rs142365524 27269155 + 27269135 27269175 41 CCCTGATTGTAAGCAGGATACTGAGGAAGATGAGGAGGAAG CCCTGATTGTAAGCAGGATACTGAGGAAGGTGAGGAGGAAG < 41bp 1 0.586451604611058 1 0.273881107568741 experiment 0.827096790777884 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NUDC ENSG00000090273 CDS Human protein_coding chr1:27269155 chr1:27269164 nonsynonymous SNV 0.812 0 30 hm5C_associated_SNPs_2630 0 0 1 0 1 NUDC chr1:27269151 3'AG 27269151 Downstream 14bp
chr1 27720382 27720382 1 + C G rs138953484 27720377 + 27720357 27720397 41 GTGAATGTAAGCAGCGTGGGCCCAGCAGAGGGGCCCACAGG GTGAATGTAAGCAGCGTGGGCCCAGGAGAGGGGCCCACAGG < 41bp 1 0.583944647188981 1 0.342406988143921 experiment 0.832110705622037 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GPR3 ENSG00000181773 CDS Human protein_coding chr1:27720377 chr1:27720382 nonsynonymous SNV 0.004 0 26 hm5C_associated_SNPs_2637 0 0 0 0 1 GPR3 chr1:27720298 3'AG 27720298 Downstream 85bp
chr1 27720382 27720382 1 + C G rs138953484 27720378 + 27720358 27720398 41 TGAATGTAAGCAGCGTGGGCCCAGCAGAGGGGCCCACAGGT TGAATGTAAGCAGCGTGGGCCCAGGAGAGGGGCCCACAGGT < 41bp 1 0.517660062011116 1 0.394191354513168 experiment 0.964679875977768 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPR3 ENSG00000181773 CDS Human protein_coding chr1:27720378 chr1:27720382 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_2638 0 0 0 0 1 GPR3 chr1:27720298 3'AG 27720298 Downstream 85bp
chr1 27720382 27720382 1 + C G rs138953484 27720390 + 27720370 27720410 41 GCGTGGGCCCAGCAGAGGGGCCCACAGGTCCAGCCGCACCA GCGTGGGCCCAGGAGAGGGGCCCACAGGTCCAGCCGCACCA < 41bp 1 0.230199119866606 1 0.0603905618190765 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPR3 ENSG00000181773 CDS Human protein_coding chr1:27720390 chr1:27720382 nonsynonymous SNV 0.004 0 13 hm5C_associated_SNPs_2639 0 0 0 0 1 GPR3 chr1:27720298 3'AG 27720298 Downstream 85bp
chr1 27720382 27720382 1 + C G rs138953484 27720391 + 27720371 27720411 41 CGTGGGCCCAGCAGAGGGGCCCACAGGTCCAGCCGCACCAC CGTGGGCCCAGGAGAGGGGCCCACAGGTCCAGCCGCACCAC < 41bp 1 0.721021110222311 1 0.122599512338638 experiment 0.557957779555379 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPR3 ENSG00000181773 CDS Human protein_coding chr1:27720391 chr1:27720382 nonsynonymous SNV 0.004 0 12 hm5C_associated_SNPs_2640 0 0 0 0 1 GPR3 chr1:27720298 3'AG 27720298 Downstream 85bp
chr1 27720382 27720382 1 + C G rs138953484 27720392 + 27720372 27720412 41 GTGGGCCCAGCAGAGGGGCCCACAGGTCCAGCCGCACCACT GTGGGCCCAGGAGAGGGGCCCACAGGTCCAGCCGCACCACT < 41bp 1 0.727079847224974 1 0.598622441291809 experiment 0.545840305550052 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPR3 ENSG00000181773 CDS Human protein_coding chr1:27720392 chr1:27720382 nonsynonymous SNV 0.004 0 11 hm5C_associated_SNPs_2641 0 0 0 0 1 GPR3 chr1:27720298 3'AG 27720298 Downstream 85bp
chr1 28279736 28279736 1 + C T rs144312950 28279755 + 28279735 28279775 41 TCTATGCTGCTTTGGGAAATCATGATTTTCACCCCAAAAAC TTTATGCTGCTTTGGGAAATCATGATTTTCACCCCAAAAAC < 41bp 1 0.614538414343221 1 0.414602339267731 experiment 0.770923171313558 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMPDL3B ENSG00000130768 CDS Human protein_coding chr1:28279755 chr1:28279736 synonymous SNV . 0 2 hm5C_associated_SNPs_2645 0 0 0 0 1 SMPDL3B chr1:28279726 3'AG 28279726 Downstream 11bp
chr1 28600574 28600574 1 + C T rs114922467 28600565 + 28600545 28600585 41 CCTCAGCTGACATCCTGGAGCCCTCTCCACACCCAGACATG CCTCAGCTGACATCCTGGAGCCCTCTCCATACCCAGACATG < 41bp 1 0.0206874586523463 1 0.0153647661209106 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SESN2 ENSG00000130766 CDS Human protein_coding chr1:28600565 chr1:28600574 nonsynonymous SNV 1.000 0 30 hm5C_associated_SNPs_2647 0 0 1 0 2 SESN2 chr1:28600551 3'AG 28600551 Downstream 24bp
chr1 28600574 28600574 1 + C T rs114922467 28600565 + 28600545 28600585 41 CCTCAGCTGACATCCTGGAGCCCTCTCCACACCCAGACATG CCTCAGCTGACATCCTGGAGCCCTCTCCATACCCAGACATG < 41bp 1 0.0206874586523463 1 0.0153647661209106 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SESN2 ENSG00000130766 CDS Human protein_coding chr1:28600565 chr1:28600574 nonsynonymous SNV 1.000 0 30 hm5C_associated_SNPs_2647 0 0 1 0 2 SESN2 chr1:28600669 5'GT 28600669 Upstream 96bp
chr1 28861636 28861636 1 + G A rs2066726 28861637 + 28861617 28861657 41 TGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGCCTCA TGCAGGTGCAGCTGGATGTACCTGTGGTAAAGGTGGCCTCA < 41bp 1 0.300582107908707 1 0.238028407096863 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28861637 chr1:28861636 synonymous SNV . 0 20 hm5C_associated_SNPs_2649 0 0 1 0 2 RCC1 chr1:28861562 3'AG 28861562 Downstream 75bp
chr1 28861636 28861636 1 + G A rs2066726 28861637 + 28861617 28861657 41 TGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGCCTCA TGCAGGTGCAGCTGGATGTACCTGTGGTAAAGGTGGCCTCA < 41bp 1 0.300582107908707 1 0.238028407096863 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28861637 chr1:28861636 synonymous SNV . 0 20 hm5C_associated_SNPs_2649 0 0 1 0 2 RCC1 chr1:28861658 5'GT 28861658 Upstream 23bp
chr1 28880201 28880201 1 + T C rs145048352 28880211 + 28880191 28880231 41 TTTGCCACCATGGGGGAGACCGTAATGAGCGTCAAAATTAT TTTGCCACCACGGGGGAGACCGTAATGAGCGTCAAAATTAT < 41bp 1 0.587768694472669 1 0.333475470542908 experiment 0.824462611054663 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRNAU1AP ENSG00000180098 CDS Human protein_coding chr1:28880211 chr1:28880201 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_2650 0 0 1 0 2 TRNAU1AP chr1:28880152 3'AG 28880152 Downstream 50bp
chr1 28880201 28880201 1 + T C rs145048352 28880211 + 28880191 28880231 41 TTTGCCACCATGGGGGAGACCGTAATGAGCGTCAAAATTAT TTTGCCACCACGGGGGAGACCGTAATGAGCGTCAAAATTAT < 41bp 1 0.587768694472669 1 0.333475470542908 experiment 0.824462611054663 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRNAU1AP ENSG00000180098 CDS Human protein_coding chr1:28880211 chr1:28880201 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_2650 0 0 1 0 2 TRNAU1AP chr1:28880249 5'GT 28880249 Upstream 49bp
chr1 31883192 31883192 1 + T A rs184916722 31883189 + 31883169 31883209 41 ACTTCATCTCCTCAGTAGTCCCCTCAGATAGCTGGGGTAAA ACTTCATCTCCTCAGTAGTCCCCACAGATAGCTGGGGTAAA < 41bp 1 0.0110733671087771 1 0.0905274748802185 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SERINC2 ENSG00000168528 UTR5 Human protein_coding chr1:31883189 chr1:31883192 . . 0 24 hm5C_associated_SNPs_2699 0 0 0 0 1 SERINC2 chr1:31883282 5'GT 31883282 Upstream 91bp
chr1 31898639 31898639 1 + C T rs35976845 31898654 + 31898634 31898674 41 TTCGGCGTCGTGGGCTCCTTCCTCTTCATCCTCATCCAGCT TTCGGTGTCGTGGGCTCCTTCCTCTTCATCCTCATCCAGCT < 41bp 1 0.149295501212511 1 0.507026076316833 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31898654 chr1:31898639 synonymous SNV . 0 6 hm5C_associated_SNPs_2700 0 0 0 0 1 SERINC2 chr1:31898623 3'AG 31898623 Downstream 17bp
chr1 31898640 31898640 1 + G A rs148798555 31898654 + 31898634 31898674 41 TTCGGCGTCGTGGGCTCCTTCCTCTTCATCCTCATCCAGCT TTCGGCATCGTGGGCTCCTTCCTCTTCATCCTCATCCAGCT < 41bp 1 0.147250376355672 1 0.283071219921112 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31898654 chr1:31898640 nonsynonymous SNV 0.957 2 7 hm5C_associated_SNPs_2701 0 0 0 0 1 SERINC2 chr1:31898623 3'AG 31898623 Downstream 18bp
chr1 32573672 32573672 1 + A G rs377161233 32573677 + 32573657 32573697 41 ATATTGTCTACTGAAAGCTGCCGCTGAAGCTGCCGCCGTTG ATATTGTCTACTGAAGGCTGCCGCTGAAGCTGCCGCCGTTG < 41bp 1 0.163855226503547 1 0.0748861730098724 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KPNA6 ENSG00000025800 UTR5 Human protein_coding chr1:32573677 chr1:32573672 . . 0 16 hm5C_associated_SNPs_2702 0 0 1 0 1 KPNA6 chr1:32573735 5'GT 32573735 Upstream 64bp
chr1 32647150 32647150 1 + A C rs530562335 32647149 + 32647129 32647169 41 AGACCGAGACCATCGAAGGCCACAGGAGAAGAAAAAAGCCA AGACCGAGACCATCGAAGGCCCCAGGAGAAGAAAAAAGCCA < 41bp 1 0.20149683640058 1 0.403977394104004 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TXLNA ENSG00000084652 CDS Human protein_coding chr1:32647149 chr1:32647150 synonymous SNV . 0 22 hm5C_associated_SNPs_2705 0 0 1 0 1 TXLNA chr1:32647178 5'GT 32647178 Upstream 29bp
chr1 33957267 33957267 1 + T C rs192219497 33957260 + 33957240 33957280 41 ATGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGGCCCCA ATGTTGAGTCTACCCAGGGGCCCAGGACTGCAGGGGCCCCA < 41bp 1 0.262725652073385 1 0.0673602819442749 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957260 chr1:33957267 nonsynonymous SNV 0.818 0 28 hm5C_associated_SNPs_2711 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 36bp
chr1 33957267 33957267 1 + T C rs192219497 33957261 + 33957241 33957281 41 TGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGGCCCCAG TGTTGAGTCTACCCAGGGGCCCAGGACTGCAGGGGCCCCAG < 41bp 1 0.522042941161691 1 0.367760002613068 experiment 0.955914117676619 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957261 chr1:33957267 nonsynonymous SNV 0.818 0 27 hm5C_associated_SNPs_2712 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 36bp
chr1 33957267 33957267 1 + T C rs192219497 33957276 + 33957256 33957296 41 GGGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTC GGGGCCCAGGACTGCAGGGGCCCCAGCTCTGTTCCAGAGTC < 41bp 1 0.484500327569894 1 0.258573114871979 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957276 chr1:33957267 nonsynonymous SNV 0.818 0 12 hm5C_associated_SNPs_2713 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 36bp
chr1 33957267 33957267 1 + T C rs192219497 33957277 + 33957257 33957297 41 GGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCG GGGCCCAGGACTGCAGGGGCCCCAGCTCTGTTCCAGAGTCG < 41bp 1 0.225870501479746 1 0.0984577238559723 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957277 chr1:33957267 nonsynonymous SNV 0.818 0 11 hm5C_associated_SNPs_2714 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 36bp
chr1 33957267 33957267 1 + T C rs192219497 33957278 + 33957258 33957298 41 GGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGT GGCCCAGGACTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGT < 41bp 1 0.104746827273742 1 0.176896035671234 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957278 chr1:33957267 nonsynonymous SNV 0.818 0 10 hm5C_associated_SNPs_2715 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 36bp
chr1 33957267 33957267 1 + T C rs192219497 33957279 + 33957259 33957299 41 GCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGTA GCCCAGGACTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGTA < 41bp 1 0.413199873445355 1 0.141028553247452 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957279 chr1:33957267 nonsynonymous SNV 0.818 0 9 hm5C_associated_SNPs_2716 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 36bp
chr1 36354035 36354035 1 + C T rs140869088 36354031 + 36354011 36354051 41 GCCTCTTTGTCTTGTAGCTGCGGGCGCTTACCTGCCCCCCC GCCTCTTTGTCTTGTAGCTGCGGGTGCTTACCTGCCCCCCC < 41bp 1 0.799729855555659 1 0.881552278995514 experiment 0.400540288888681 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AGO1 ENSG00000092847 CDS Human protein_coding chr1:36354031 chr1:36354035 synonymous SNV . 0 25 hm5C_associated_SNPs_2726 0 0 1 0 1 AGO1 chr1:36354028 3'AG 36354028 Downstream 8bp
chr1 36358832 36358832 1 + G A rs146336392 36358839 + 36358819 36358859 41 CTGTTCCCTTGGAGTCTGTGCAAGCCCTGGATGTGGCCATG CTGTTCCCTTGGAATCTGTGCAAGCCCTGGATGTGGCCATG < 41bp 1 0.258975795872783 1 0.260308623313904 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGO1 ENSG00000092847 CDS Human protein_coding chr1:36358839 chr1:36358832 synonymous SNV . 0 14 hm5C_associated_SNPs_2727 0 0 1 0 1 AGO1 chr1:36358879 5'GT 36358879 Upstream 48bp
chr1 36643105 36643105 1 + T A rs147343054 36643097 + 36643077 36643117 41 ATGATGCCACTGCACTCCAGCCTGGGGGTCAGCCAGATTCT ATGATGCCACTGCACTCCAGCCTGGGGGACAGCCAGATTCT < 41bp 1 0.0418329364471822 1 0.234337210655212 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAP7D1 ENSG00000116871 UTR5 Human protein_coding chr1:36643097 chr1:36643105 . . 0 29 hm5C_associated_SNPs_2729 0 0 0 0 1 MAP7D1 chr1:36643175 5'GT 36643175 Upstream 71bp
chr1 37948071 37948071 1 + G A rs142536124 37948073 + 37948053 37948093 41 CCCACTGGGCCGGCACGGGCCCAGCCTGGACAACTTCCTGC CCCACTGGGCCGGCACGGACCCAGCCTGGACAACTTCCTGC < 41bp 1 0.196726784997283 1 0.0863814055919647 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37948073 chr1:37948071 nonsynonymous SNV 0.984 0 19 hm5C_associated_SNPs_2734 0 0 1 0 2 ZC3H12A chr1:37948035 3'AG 37948035 Downstream 37bp
chr1 37948071 37948071 1 + G A rs142536124 37948073 + 37948053 37948093 41 CCCACTGGGCCGGCACGGGCCCAGCCTGGACAACTTCCTGC CCCACTGGGCCGGCACGGACCCAGCCTGGACAACTTCCTGC < 41bp 1 0.196726784997283 1 0.0863814055919647 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37948073 chr1:37948071 nonsynonymous SNV 0.984 0 19 hm5C_associated_SNPs_2734 0 0 1 0 2 ZC3H12A chr1:37948141 5'GT 37948141 Upstream 71bp
chr1 37948071 37948071 1 + G A rs142536124 37948074 + 37948054 37948094 41 CCACTGGGCCGGCACGGGCCCAGCCTGGACAACTTCCTGCG CCACTGGGCCGGCACGGACCCAGCCTGGACAACTTCCTGCG < 41bp 1 0.449683861923343 1 0.329294979572296 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37948074 chr1:37948071 nonsynonymous SNV 0.984 0 18 hm5C_associated_SNPs_2735 0 0 1 0 2 ZC3H12A chr1:37948035 3'AG 37948035 Downstream 37bp
chr1 37948071 37948071 1 + G A rs142536124 37948074 + 37948054 37948094 41 CCACTGGGCCGGCACGGGCCCAGCCTGGACAACTTCCTGCG CCACTGGGCCGGCACGGACCCAGCCTGGACAACTTCCTGCG < 41bp 1 0.449683861923343 1 0.329294979572296 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37948074 chr1:37948071 nonsynonymous SNV 0.984 0 18 hm5C_associated_SNPs_2735 0 0 1 0 2 ZC3H12A chr1:37948141 5'GT 37948141 Upstream 71bp
chr1 39776654 39776654 1 + A G rs146950475 39776662 + 39776642 39776682 41 GGACAATGCATTAAGGATTGCAGAGCAAGAGGTAAGCCCTA GGACAATGCATTGAGGATTGCAGAGCAAGAGGTAAGCCCTA < 41bp 1 0.247485878717214 1 0.36653533577919 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39776662 chr1:39776654 synonymous SNV . 0 13 hm5C_associated_SNPs_2752 0 0 1 0 1 MACF1 chr1:39776672 5'GT 39776672 Upstream 19bp
chr1 39898283 39898283 1 + G A rs144615050 39898302 + 39898282 39898322 41 CGCCTGGAACAGGACCAGACCACAGCTCAGCTTCAGGTACA CACCTGGAACAGGACCAGACCACAGCTCAGCTTCAGGTACA < 41bp 1 0.242826226112944 1 0.185109406709671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39898302 chr1:39898283 nonsynonymous SNV 0.997 4 2 hm5C_associated_SNPs_2755 0 0 1 0 2 MACF1 chr1:39898207 3'AG 39898207 Downstream 77bp
chr1 39898283 39898283 1 + G A rs144615050 39898302 + 39898282 39898322 41 CGCCTGGAACAGGACCAGACCACAGCTCAGCTTCAGGTACA CACCTGGAACAGGACCAGACCACAGCTCAGCTTCAGGTACA < 41bp 1 0.242826226112944 1 0.185109406709671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39898302 chr1:39898283 nonsynonymous SNV 0.997 4 2 hm5C_associated_SNPs_2755 0 0 1 0 2 MACF1 chr1:39898326 5'GT 39898326 Upstream 44bp
chr1 39910477 39910477 1 + T C rs143526587 39910457 + 39910437 39910477 41 AGACAGAACAGAGTGTAGCACTTTTGGAGCAGAAGTGGCAT AGACAGAACAGAGTGTAGCACTTTTGGAGCAGAAGTGGCAC < 41bp 1 0.0689504208108562 1 0.0614574253559113 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39910457 chr1:39910477 synonymous SNV . 0 41 hm5C_associated_SNPs_2756 0 0 1 0 1 MACF1 chr1:39910507 5'GT 39910507 Upstream 31bp
chr1 39910477 39910477 1 + T C rs143526587 39910466 + 39910446 39910486 41 AGAGTGTAGCACTTTTGGAGCAGAAGTGGCATGTGGTCAGC AGAGTGTAGCACTTTTGGAGCAGAAGTGGCACGTGGTCAGC < 41bp 1 0.256766261062746 1 0.240866839885712 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39910466 chr1:39910477 synonymous SNV . 0 32 hm5C_associated_SNPs_2757 0 0 1 0 1 MACF1 chr1:39910507 5'GT 39910507 Upstream 31bp
chr1 39910477 39910477 1 + T C rs143526587 39910475 + 39910455 39910495 41 CACTTTTGGAGCAGAAGTGGCATGTGGTCAGCAGTAAGATG CACTTTTGGAGCAGAAGTGGCACGTGGTCAGCAGTAAGATG < 41bp 1 0.179822150358968 1 0.300908386707306 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39910475 chr1:39910477 synonymous SNV . 0 23 hm5C_associated_SNPs_2758 0 0 1 0 1 MACF1 chr1:39910507 5'GT 39910507 Upstream 31bp
chr1 39910477 39910477 1 + T C rs143526587 39910486 + 39910466 39910506 41 CAGAAGTGGCATGTGGTCAGCAGTAAGATGGAAGAAAGAAA CAGAAGTGGCACGTGGTCAGCAGTAAGATGGAAGAAAGAAA < 41bp 1 0.127666440995728 1 0.475773245096207 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39910486 chr1:39910477 synonymous SNV . 0 12 hm5C_associated_SNPs_2759 0 0 1 0 1 MACF1 chr1:39910507 5'GT 39910507 Upstream 31bp
chr1 40533358 40533358 1 + G A rs34763876 40533350 + 40533330 40533370 41 AGTCTGCTTCCCGCTCATCACTGTTCGCGCAGATTAATCAG AGTCTGCTTCCCGCTCATCACTGTTCGCACAGATTAATCAG < 41bp 1 0.405554204081787 1 0.0859212875366211 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAP1 ENSG00000131236 CDS Human protein_coding chr1:40533350 chr1:40533358 synonymous SNV . 0 29 hm5C_associated_SNPs_2761 0 0 1 0 1 CAP1 chr1:40533389 5'GT 40533389 Upstream 32bp
chr1 40997371 40997371 1 + C T rs150418119 40997380 + 40997360 40997400 41 GGAAGTGCGGGCGGGTGTTGCTCCCCTGTCTCTGGACGACG GGAAGTGCGGGTGGGTGTTGCTCCCCTGTCTCTGGACGACG < 41bp 1 0.529482968580743 1 0.396405935287476 experiment 0.941034062838514 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF684 ENSG00000117010 UTR5 Human protein_coding chr1:40997380 chr1:40997371 . . 0 12 hm5C_associated_SNPs_2762 0 0 1 0 1 ZNF684 chr1:40997459 5'GT 40997459 Upstream 89bp
chr1 40997382 40997382 1 + C A rs138405225 40997380 + 40997360 40997400 41 GGAAGTGCGGGCGGGTGTTGCTCCCCTGTCTCTGGACGACG GGAAGTGCGGGCGGGTGTTGCTACCCTGTCTCTGGACGACG < 41bp 1 0.543472075280535 1 0.399595439434052 experiment 0.91305584943893 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF684 ENSG00000117010 UTR5 Human protein_coding chr1:40997380 chr1:40997382 . . 0 23 hm5C_associated_SNPs_2763 0 0 1 0 1 ZNF684 chr1:40997459 5'GT 40997459 Upstream 78bp
chr1 40997389 40997389 1 + C T rs41268069 40997380 + 40997360 40997400 41 GGAAGTGCGGGCGGGTGTTGCTCCCCTGTCTCTGGACGACG GGAAGTGCGGGCGGGTGTTGCTCCCCTGTTTCTGGACGACG < 41bp 1 0.544288138358786 1 0.586774468421936 experiment 0.911423723282428 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF684 ENSG00000117010 UTR5 Human protein_coding chr1:40997380 chr1:40997389 . . 0 30 hm5C_associated_SNPs_2764 0 0 1 0 1 ZNF684 chr1:40997459 5'GT 40997459 Upstream 71bp
chr1 40997453 40997453 1 + G T rs41268071 40997443 + 40997423 40997463 41 AGCCGGAGCTGCGAGCGAGGCAGTGAAAGGGTGGCAGGTAT AGCCGGAGCTGCGAGCGAGGCAGTGAAAGGTTGGCAGGTAT < 41bp 1 0.760274739438806 1 0.601860582828522 experiment 0.479450521122387 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF684 ENSG00000117010 UTR5 Human protein_coding chr1:40997443 chr1:40997453 . . 0 31 hm5C_associated_SNPs_2765 0 0 1 0 1 ZNF684 chr1:40997459 5'GT 40997459 Upstream 7bp
chr1 41289869 41289869 1 + C A rs199809248 41289886 + 41289866 41289906 41 TCCCGTTACCCGCCCGTTGCCACCTGCCACCGGCCGGGCAG TCCAGTTACCCGCCCGTTGCCACCTGCCACCGGCCGGGCAG < 41bp 1 0.723236162046342 1 0.128138363361359 experiment 0.553527675907316 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41289886 chr1:41289869 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_2766 0 0 0 0 1 KCNQ4 chr1:41289930 5'GT 41289930 Upstream 62bp
chr1 41289887 41289887 1 + A C rs555850253 41289886 + 41289866 41289906 41 TCCCGTTACCCGCCCGTTGCCACCTGCCACCGGCCGGGCAG TCCCGTTACCCGCCCGTTGCCCCCTGCCACCGGCCGGGCAG < 41bp 1 0.491448047184829 1 0.131405264139175 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41289886 chr1:41289887 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_2767 0 0 0 0 1 KCNQ4 chr1:41289930 5'GT 41289930 Upstream 44bp
chr1 43882213 43882213 1 + C T rs375794037 43882219 + 43882199 43882239 41 GCTCCAGGGATTATCGTGATCACGGATGGGGTGACCAGTGT GCTCCAGGGATTATTGTGATCACGGATGGGGTGACCAGTGT < 41bp 1 0.509149006507833 1 0.406282156705856 experiment 0.981701986984334 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43882219 chr1:43882213 synonymous SNV . 0 15 hm5C_associated_SNPs_2770 0 0 1 0 2 SZT2 chr1:43882206 3'AG 43882206 Downstream 8bp
chr1 43882213 43882213 1 + C T rs375794037 43882219 + 43882199 43882239 41 GCTCCAGGGATTATCGTGATCACGGATGGGGTGACCAGTGT GCTCCAGGGATTATTGTGATCACGGATGGGGTGACCAGTGT < 41bp 1 0.509149006507833 1 0.406282156705856 experiment 0.981701986984334 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43882219 chr1:43882213 synonymous SNV . 0 15 hm5C_associated_SNPs_2770 0 0 1 0 2 SZT2 chr1:43882312 5'GT 43882312 Upstream 100bp
chr1 43917083 43917083 1 - C G rs117454252 43917100 - 43917080 43917120 41 GGCTACAAAGGCTTCGTGGGCTGTGAGTATCAGCCTCGAGG GGCTACAAAGGCTTCGTGGGCTGTGAGTATCAGCCTCCAGG < 41bp 1 0.295300915066599 1 0.0429071187973022 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HYI ENSG00000178922 CDS Human protein_coding chr1:43917100 chr1:43917083 nonsynonymous SNV 0.478 1 38 hm5C_associated_SNPs_2771 0 0 0 0 1 HYI chr1:43917081 5'GT 43917081 Upstream 3bp
chr1 43917098 43917098 1 - C G rs79439514 43917100 - 43917080 43917120 41 GGCTACAAAGGCTTCGTGGGCTGTGAGTATCAGCCTCGAGG GGCTACAAAGGCTTCGTGGGCTCTGAGTATCAGCCTCGAGG < 41bp 1 0.237214096294113 1 0.0792995989322662 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HYI;HYI ENSG00000178922;ENSG00000178922 exonic;splicing Human protein_coding chr1:43917100 chr1:43917098 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_2772 0 0 0 0 1 HYI chr1:43917081 5'GT 43917081 Upstream 18bp
chr1 44058227 44058227 1 + G A rs79766207 44058240 + 44058220 44058260 41 TATGGGGGTGGGCGTCTTCACCCCCACCATTGAGGCCCGCA TATGGGGATGGGCGTCTTCACCCCCACCATTGAGGCCCGCA < 41bp 1 0.13765468100786 1 0.0764477849006653 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44058240 chr1:44058227 nonsynonymous SNV 0.991 0 8 hm5C_associated_SNPs_2773 0 0 1 0 2 PTPRF chr1:44058128 3'AG 44058128 Downstream 100bp
chr1 44058227 44058227 1 + G A rs79766207 44058240 + 44058220 44058260 41 TATGGGGGTGGGCGTCTTCACCCCCACCATTGAGGCCCGCA TATGGGGATGGGCGTCTTCACCCCCACCATTGAGGCCCGCA < 41bp 1 0.13765468100786 1 0.0764477849006653 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44058240 chr1:44058227 nonsynonymous SNV 0.991 0 8 hm5C_associated_SNPs_2773 0 0 1 0 2 PTPRF chr1:44058272 5'GT 44058272 Upstream 46bp
chr1 44071221 44071221 1 + G A rs631248 44071222 + 44071202 44071242 41 GGTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGG GGTTCTACATTGTTGTGGTACCCATTGACCGTGTGGGCGGG < 41bp 1 0.101318890502918 1 0.0481720864772797 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44071222 chr1:44071221 synonymous SNV . 0 20 hm5C_associated_SNPs_2774 0 0 1 0 2 PTPRF chr1:44071200 3'AG 44071200 Downstream 22bp
chr1 44071221 44071221 1 + G A rs631248 44071222 + 44071202 44071242 41 GGTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGG GGTTCTACATTGTTGTGGTACCCATTGACCGTGTGGGCGGG < 41bp 1 0.101318890502918 1 0.0481720864772797 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44071222 chr1:44071221 synonymous SNV . 0 20 hm5C_associated_SNPs_2774 0 0 1 0 2 PTPRF chr1:44071293 5'GT 44071293 Upstream 73bp
chr1 44071221 44071221 1 + G A rs631248 44071223 + 44071203 44071243 41 GTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGGA GTTCTACATTGTTGTGGTACCCATTGACCGTGTGGGCGGGA < 41bp 1 0.0607859670379911 1 0.108093500137329 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44071223 chr1:44071221 synonymous SNV . 0 19 hm5C_associated_SNPs_2775 0 0 1 0 2 PTPRF chr1:44071200 3'AG 44071200 Downstream 22bp
chr1 44071221 44071221 1 + G A rs631248 44071223 + 44071203 44071243 41 GTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGGA GTTCTACATTGTTGTGGTACCCATTGACCGTGTGGGCGGGA < 41bp 1 0.0607859670379911 1 0.108093500137329 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44071223 chr1:44071221 synonymous SNV . 0 19 hm5C_associated_SNPs_2775 0 0 1 0 2 PTPRF chr1:44071293 5'GT 44071293 Upstream 73bp
chr1 44087628 44087628 1 + G A rs141490430 44087609 + 44087589 44087629 41 GCCCCCTATCCTGGCAGGACCAGTATCAGCTGTGCTACCGT GCCCCCTATCCTGGCAGGACCAGTATCAGCTGTGCTACCAT < 41bp 1 0.355880805389725 1 0.485663563013077 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44087609 chr1:44087628 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_2776 0 0 1 0 1 PTPRF chr1:44087606 3'AG 44087606 Downstream 23bp
chr1 44446798 44446798 1 + C T rs141394710 44446804 + 44446784 44446824 41 AGCAGCCGGATGCCCGGGCCCACTGGGCGGGCCAGTGGCCG AGCAGCCGGATGCCTGGGCCCACTGGGCGGGCCAGTGGCCG < 41bp 1 0.617171668647554 1 0.134473651647568 experiment 0.765656662704892 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control B4GALT2 ENSG00000117411 CDS Human protein_coding chr1:44446804 chr1:44446798 nonsynonymous SNV 0.973 0 15 hm5C_associated_SNPs_2781 0 0 1 0 1 B4GALT2 chr1:44446781 3'AG 44446781 Downstream 18bp
chr1 45116466 45116466 1 + G A rs374199001 45116468 + 45116448 45116488 41 GCTATCTGCCCCAGGCAGGCCTCGCCTCCAGCAGCCCCACC GCTATCTGCCCCAGGCAGACCTCGCCTCCAGCAGCCCCACC < 41bp 1 0.629063476154961 1 0.338775813579559 experiment 0.741873047690078 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF220 ENSG00000187147 UTR3 Human protein_coding chr1:45116468 chr1:45116466 . . 0 19 hm5C_associated_SNPs_2782 0 0 1 1 1 RNF220 chr1:45116376 3'AG 45116376 Downstream 91bp
chr1 45116466 45116466 1 + G A rs374199001 45116470 + 45116450 45116490 41 TATCTGCCCCAGGCAGGCCTCGCCTCCAGCAGCCCCACCTG TATCTGCCCCAGGCAGACCTCGCCTCCAGCAGCCCCACCTG < 41bp 1 0.728079680579977 1 0.780966401100159 experiment 0.543840638840047 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF220 ENSG00000187147 UTR3 Human protein_coding chr1:45116470 chr1:45116466 . . 0 17 hm5C_associated_SNPs_2783 0 0 1 1 1 RNF220 chr1:45116376 3'AG 45116376 Downstream 91bp
chr1 45116470 45116470 1 + C T rs186111768 45116468 + 45116448 45116488 41 GCTATCTGCCCCAGGCAGGCCTCGCCTCCAGCAGCCCCACC GCTATCTGCCCCAGGCAGGCCTTGCCTCCAGCAGCCCCACC < 41bp 1 0.302867877666219 1 0.0716997683048248 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF220 ENSG00000187147 UTR3 Human protein_coding chr1:45116468 chr1:45116470 . . 0 23 hm5C_associated_SNPs_2784 0 0 0 0 1 RNF220 chr1:45116376 3'AG 45116376 Downstream 95bp
chr1 45241254 45241254 1 + A G rs550212070 45241253 + 45241233 45241273 41 ATCTTTGCGGTTTCTCTTTCCAGCCAGCGCCGAGCGATGGG ATCTTTGCGGTTTCTCTTTCCGGCCAGCGCCGAGCGATGGG < 41bp 1 0.528931658118861 1 0.737863123416901 experiment 0.942136683762279 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPS8 ENSG00000225721 ncRNA_exonic Human protein_coding chr1:45241253 chr1:45241254 . . 0 22 hm5C_associated_SNPs_2787 0 0 1 0 1 RPS8 chr1:45241272 5'GT 45241272 Upstream 19bp
chr1 45241254 45241254 1 + A G rs550212070 45241260 + 45241240 45241280 41 CGGTTTCTCTTTCCAGCCAGCGCCGAGCGATGGGTGAGTGT CGGTTTCTCTTTCCGGCCAGCGCCGAGCGATGGGTGAGTGT < 41bp 1 0.611830142289394 1 0.451420187950134 experiment 0.776339715421213 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS8 ENSG00000225721 ncRNA_exonic Human protein_coding chr1:45241260 chr1:45241254 . . 0 15 hm5C_associated_SNPs_2788 0 0 1 0 1 RPS8 chr1:45241272 5'GT 45241272 Upstream 19bp
chr1 45241268 45241268 1 + G A rs74070602 45241253 + 45241233 45241273 41 ATCTTTGCGGTTTCTCTTTCCAGCCAGCGCCGAGCGATGGG ATCTTTGCGGTTTCTCTTTCCAGCCAGCGCCGAGCAATGGG < 41bp 1 0.451061776946286 1 0.404592961072922 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPS8 ENSG00000225721 ncRNA_exonic Human protein_coding chr1:45241253 chr1:45241268 . . 0 36 hm5C_associated_SNPs_2789 0 0 1 0 1 RPS8 chr1:45241272 5'GT 45241272 Upstream 5bp
chr1 45241268 45241268 1 + G A rs74070602 45241260 + 45241240 45241280 41 CGGTTTCTCTTTCCAGCCAGCGCCGAGCGATGGGTGAGTGT CGGTTTCTCTTTCCAGCCAGCGCCGAGCAATGGGTGAGTGT < 41bp 1 0.585421153362095 1 0.448462724685669 experiment 0.82915769327581 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS8 ENSG00000225721 ncRNA_exonic Human protein_coding chr1:45241260 chr1:45241268 . . 0 29 hm5C_associated_SNPs_2790 0 0 1 0 1 RPS8 chr1:45241272 5'GT 45241272 Upstream 5bp
chr1 45267302 45267302 1 + C A rs140199593 45267317 + 45267297 45267337 41 CTGGCCCACATCTGGAAGGCCCGGCACACCCTGTTGGAGCC CTGGCACACATCTGGAAGGCCCGGCACACCCTGTTGGAGCC < 41bp 1 0.256386456940148 1 0.539131283760071 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267317 chr1:45267302 synonymous SNV . 0 6 hm5C_associated_SNPs_2813 0 0 1 0 1 PLK3 chr1:45267294 3'AG 45267294 Downstream 9bp
chr1 45270024 45270024 1 + G A rs11211036 45270016 + 45269996 45270036 41 CCTCTCCCATGACAGCGGAACAGAACCCGGCCCCCCTGGCC CCTCTCCCATGACAGCGGAACAGAACCCAGCCCCCCTGGCC < 41bp 1 0.599613530653705 1 0.545477628707886 experiment 0.80077293869259 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45270016 chr1:45270024 synonymous SNV . 0 29 hm5C_associated_SNPs_2814 0 0 1 0 1 PLK3 chr1:45270011 3'AG 45270011 Downstream 14bp
chr1 45479709 45479709 1 + A G rs2228084 45479707 + 45479687 45479727 41 TCCTCACTGATGCTCTGGTCCCATATCTGGTAGGACAAGTG TCCTCACTGATGCTCTGGTCCCGTATCTGGTAGGACAAGTG < 41bp 1 0.380126084857442 1 0.0864208042621613 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UROD ENSG00000126088 CDS Human protein_coding chr1:45479707 chr1:45479709 synonymous SNV . 0 23 hm5C_associated_SNPs_2815 2 0 1 0 1 UROD chr1:45479742 5'GT 45479742 Upstream 34bp
chr1 45479709 45479709 1 + A G rs2228084 45479708 + 45479688 45479728 41 CCTCACTGATGCTCTGGTCCCATATCTGGTAGGACAAGTGG CCTCACTGATGCTCTGGTCCCGTATCTGGTAGGACAAGTGG < 41bp 1 0.318788745423037 1 0.159823358058929 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UROD ENSG00000126088 CDS Human protein_coding chr1:45479708 chr1:45479709 synonymous SNV . 0 22 hm5C_associated_SNPs_2816 2 0 1 0 1 UROD chr1:45479742 5'GT 45479742 Upstream 34bp
chr1 45805880 45805880 1 + G A rs2275602 45805874 + 45805854 45805894 41 GAACCGCGCCAGGAGACGGACCGCAAGTCCAGCGTACCCAC GAACCGCGCCAGGAGACGGACCGCAAATCCAGCGTACCCAC < 41bp 1 0.678132701402358 1 0.0803314447402954 experiment 0.643734597195283 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TOE1 ENSG00000132781 CDS Human protein_coding chr1:45805874 chr1:45805880 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_2821 1 0 0 0 1 TOE1 chr1:45805976 5'GT 45805976 Upstream 97bp
chr1 45973928 45973928 1 + G A rs2275276 45973929 + 45973909 45973949 41 TCATTGCTGACTACGAGGTGCACCCCAACCGACGCCCCAAG TCATTGCTGACTACGAGGTACACCCCAACCGACGCCCCAAG < 41bp 1 0.266807064835338 1 0.0367278158664703 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMACHC ENSG00000132763 CDS Human protein_coding chr1:45973929 chr1:45973928 synonymous SNV . 0 20 hm5C_associated_SNPs_2823 2 0 0 0 1 MMACHC chr1:45973884 3'AG 45973884 Downstream 45bp
chr1 46016687 46016687 1 + T C rs9147 46016668 + 46016648 46016688 41 GGGAGGCGGCGAAGGCGGTCCACCCTGCGCGTGATCCTTTA GGGAGGCGGCGAAGGCGGTCCACCCTGCGCGTGATCCTTCA < 41bp 1 0.47091002005146 1 0.285261988639832 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKR1A1 ENSG00000117448 UTR5 Human protein_coding chr1:46016668 chr1:46016687 . . 0 40 hm5C_associated_SNPs_2826 0 0 1 0 1 AKR1A1 chr1:46016638 3'AG 46016638 Downstream 50bp
chr1 46016736 46016736 1 + C T rs885755 46016728 + 46016708 46016748 41 CCTCCGGGTGGAACTTCCCCCTCACCGCCAGACTTAAGCTG CCTCCGGGTGGAACTTCCCCCTCACCGCTAGACTTAAGCTG < 41bp 1 0.321014323235359 1 0.09308722615242 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1A1 ENSG00000117448 UTR5 Human protein_coding chr1:46016728 chr1:46016736 . . 0 29 hm5C_associated_SNPs_2827 0 0 1 0 2 AKR1A1 chr1:46016638 3'AG 46016638 Downstream 99bp
chr1 46016736 46016736 1 + C T rs885755 46016728 + 46016708 46016748 41 CCTCCGGGTGGAACTTCCCCCTCACCGCCAGACTTAAGCTG CCTCCGGGTGGAACTTCCCCCTCACCGCTAGACTTAAGCTG < 41bp 1 0.321014323235359 1 0.09308722615242 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1A1 ENSG00000117448 UTR5 Human protein_coding chr1:46016728 chr1:46016736 . . 0 29 hm5C_associated_SNPs_2827 0 0 1 0 2 AKR1A1 chr1:46016827 5'GT 46016827 Upstream 92bp
chr1 46016736 46016736 1 + C T rs885755 46016732 + 46016712 46016752 41 CGGGTGGAACTTCCCCCTCACCGCCAGACTTAAGCTGAGGA CGGGTGGAACTTCCCCCTCACCGCTAGACTTAAGCTGAGGA < 41bp 1 0.234050358983179 1 0.194869220256805 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1A1 ENSG00000117448 UTR5 Human protein_coding chr1:46016732 chr1:46016736 . . 0 25 hm5C_associated_SNPs_2828 0 0 1 0 2 AKR1A1 chr1:46016638 3'AG 46016638 Downstream 99bp
chr1 46016736 46016736 1 + C T rs885755 46016732 + 46016712 46016752 41 CGGGTGGAACTTCCCCCTCACCGCCAGACTTAAGCTGAGGA CGGGTGGAACTTCCCCCTCACCGCTAGACTTAAGCTGAGGA < 41bp 1 0.234050358983179 1 0.194869220256805 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1A1 ENSG00000117448 UTR5 Human protein_coding chr1:46016732 chr1:46016736 . . 0 25 hm5C_associated_SNPs_2828 0 0 1 0 2 AKR1A1 chr1:46016827 5'GT 46016827 Upstream 92bp
chr1 46739327 46739327 1 + G A rs28363239 46739322 + 46739302 46739342 41 TGCTGGTCCTGGATTATATTCTGGCGGTGACCCGAAGCCGT TGCTGGTCCTGGATTATATTCTGGCAGTGACCCGAAGCCGT < 41bp 1 0.600158543800808 1 0.37013965845108 experiment 0.799682912398384 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739322 chr1:46739327 synonymous SNV . 0 26 hm5C_associated_SNPs_2843 0 0 1 0 2 RAD54L chr1:46739296 3'AG 46739296 Downstream 32bp
chr1 46739327 46739327 1 + G A rs28363239 46739322 + 46739302 46739342 41 TGCTGGTCCTGGATTATATTCTGGCGGTGACCCGAAGCCGT TGCTGGTCCTGGATTATATTCTGGCAGTGACCCGAAGCCGT < 41bp 1 0.600158543800808 1 0.37013965845108 experiment 0.799682912398384 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739322 chr1:46739327 synonymous SNV . 0 26 hm5C_associated_SNPs_2843 0 0 1 0 2 RAD54L chr1:46739419 5'GT 46739419 Upstream 93bp
chr1 46739814 46739814 1 + T C rs17102097 46739819 + 46739799 46739839 41 TCCCCCTTCAGGTACTTATACGTCCGCCTGGATGGCACGAT TCCCCCTTCAGGTACCTATACGTCCGCCTGGATGGCACGAT < 41bp 1 0.147296025900437 1 0.125300168991089 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739819 chr1:46739814 synonymous SNV . 0 16 hm5C_associated_SNPs_2844 0 0 1 0 2 RAD54L chr1:46739810 3'AG 46739810 Downstream 5bp
chr1 46739814 46739814 1 + T C rs17102097 46739819 + 46739799 46739839 41 TCCCCCTTCAGGTACTTATACGTCCGCCTGGATGGCACGAT TCCCCCTTCAGGTACCTATACGTCCGCCTGGATGGCACGAT < 41bp 1 0.147296025900437 1 0.125300168991089 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739819 chr1:46739814 synonymous SNV . 0 16 hm5C_associated_SNPs_2844 0 0 1 0 2 RAD54L chr1:46739888 5'GT 46739888 Upstream 75bp
chr1 46871986 46871986 1 + T A rs324419 46871992 + 46871972 46872012 41 CGAGCCCTGCTGTGTGAGGACATGTTCCGCTTGGACCCCAC CGAGCCCTGCTGTGAGAGGACATGTTCCGCTTGGACCCCAC < 41bp 1 0.390160185578547 1 0.120622038841248 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAH ENSG00000117480 CDS Human protein_coding chr1:46871992 chr1:46871986 stopgain 0.970 0 15 hm5C_associated_SNPs_2846 0 0 0 0 2 FAAH chr1:46871916 3'AG 46871916 Downstream 71bp
chr1 46871986 46871986 1 + T A rs324419 46871992 + 46871972 46872012 41 CGAGCCCTGCTGTGTGAGGACATGTTCCGCTTGGACCCCAC CGAGCCCTGCTGTGAGAGGACATGTTCCGCTTGGACCCCAC < 41bp 1 0.390160185578547 1 0.120622038841248 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAH ENSG00000117480 CDS Human protein_coding chr1:46871992 chr1:46871986 stopgain 0.970 0 15 hm5C_associated_SNPs_2846 0 0 0 0 2 FAAH chr1:46872040 5'GT 46872040 Upstream 55bp
chr1 54678305 54678305 1 + C G rs2275408 54678323 + 54678303 54678343 41 CCCTGGCTCAGGCCCGGCTCCTCTATGGGGTATGTAGGTGG CCGTGGCTCAGGCCCGGCTCCTCTATGGGGTATGTAGGTGG < 41bp 1 0.662797740216002 1 0.82034957408905 experiment 0.674404519567996 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MRPL37 ENSG00000116221 CDS Human protein_coding chr1:54678323 chr1:54678305 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_2860 0 0 1 0 1 MRPL37 chr1:54678331 5'GT 54678331 Upstream 27bp
chr1 55072915 55072915 1 + G A rs35914008 55072914 + 55072894 55072934 41 GGACTTCGTGATCCTGGCCTCGAGGCGGAAGCCTTGTGACA GGACTTCGTGATCCTGGCCTCAAGGCGGAAGCCTTGTGACA < 41bp 1 0.662176502810757 1 0.791965186595917 experiment 0.675646994378486 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55072914 chr1:55072915 synonymous SNV . 0 22 hm5C_associated_SNPs_2861 0 0 0 0 1 ACOT11 chr1:55072938 5'GT 55072938 Upstream 24bp
chr1 55073630 55073630 1 + C T rs78753605 55073619 + 55073599 55073639 41 CCCTTCCTTCACTCAGGGACCCCTATGTCATCGCGCTGAGG CCCTTCCTTCACTCAGGGACCCCTATGTCATTGCGCTGAGG < 41bp 1 0.140426948044892 1 0.0307919383049011 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55073619 chr1:55073630 synonymous SNV . 0 32 hm5C_associated_SNPs_2862 0 0 0 0 1 ACOT11 chr1:55073615 3'AG 55073615 Downstream 16bp
chr1 55524222 55524222 1 + C T rs141502002 55524235 + 55524215 55524255 41 GCCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAG GCCTACATGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAG < 41bp 1 0.168545791997513 1 0.10378897190094 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524235 chr1:55524222 nonsynonymous SNV 0.003 2 8 hm5C_associated_SNPs_2865 3 0 1 0 2 PCSK9 chr1:55524172 3'AG 55524172 Downstream 51bp
chr1 55524222 55524222 1 + C T rs141502002 55524235 + 55524215 55524255 41 GCCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAG GCCTACATGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAG < 41bp 1 0.168545791997513 1 0.10378897190094 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524235 chr1:55524222 nonsynonymous SNV 0.003 2 8 hm5C_associated_SNPs_2865 3 0 1 0 2 PCSK9 chr1:55524320 5'GT 55524320 Upstream 99bp
chr1 55524222 55524222 1 + C T rs141502002 55524236 + 55524216 55524256 41 CCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAGA CCTACATGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAGA < 41bp 1 0.502398332737606 1 0.198266088962555 experiment 0.995203334524789 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524236 chr1:55524222 nonsynonymous SNV 0.003 2 7 hm5C_associated_SNPs_2866 3 0 1 0 2 PCSK9 chr1:55524172 3'AG 55524172 Downstream 51bp
chr1 55524222 55524222 1 + C T rs141502002 55524236 + 55524216 55524256 41 CCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAGA CCTACATGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAGA < 41bp 1 0.502398332737606 1 0.198266088962555 experiment 0.995203334524789 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524236 chr1:55524222 nonsynonymous SNV 0.003 2 7 hm5C_associated_SNPs_2866 3 0 1 0 2 PCSK9 chr1:55524320 5'GT 55524320 Upstream 99bp
chr1 55524237 55524237 1 + G A rs562556 55524235 + 55524215 55524255 41 GCCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAG GCCTACACGGATGGCCACAGCCATCGCCCGCTGCGCCCCAG < 41bp 1 0.0842436065513793 1 0.0793194472789764 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524235 chr1:55524237 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_2867 3 0 1 0 2 PCSK9 chr1:55524172 3'AG 55524172 Downstream 66bp
chr1 55524237 55524237 1 + G A rs562556 55524235 + 55524215 55524255 41 GCCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAG GCCTACACGGATGGCCACAGCCATCGCCCGCTGCGCCCCAG < 41bp 1 0.0842436065513793 1 0.0793194472789764 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524235 chr1:55524237 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_2867 3 0 1 0 2 PCSK9 chr1:55524320 5'GT 55524320 Upstream 84bp
chr1 55524237 55524237 1 + G A rs562556 55524236 + 55524216 55524256 41 CCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAGA CCTACACGGATGGCCACAGCCATCGCCCGCTGCGCCCCAGA < 41bp 1 0.470897833471504 1 0.200772851705551 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524236 chr1:55524237 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_2868 3 0 1 0 2 PCSK9 chr1:55524172 3'AG 55524172 Downstream 66bp
chr1 55524237 55524237 1 + G A rs562556 55524236 + 55524216 55524256 41 CCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAGA CCTACACGGATGGCCACAGCCATCGCCCGCTGCGCCCCAGA < 41bp 1 0.470897833471504 1 0.200772851705551 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524236 chr1:55524237 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_2868 3 0 1 0 2 PCSK9 chr1:55524320 5'GT 55524320 Upstream 84bp
chr1 55524248 55524248 1 + C T rs28362268 55524235 + 55524215 55524255 41 GCCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAG GCCTACACGGATGGCCACAGCCGTCGCCCGCTGTGCCCCAG < 41bp 1 0.140401040797392 1 0.23630428314209 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524235 chr1:55524248 nonsynonymous SNV . 0 34 hm5C_associated_SNPs_2869 1 0 1 0 2 PCSK9 chr1:55524172 3'AG 55524172 Downstream 77bp
chr1 55524248 55524248 1 + C T rs28362268 55524235 + 55524215 55524255 41 GCCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAG GCCTACACGGATGGCCACAGCCGTCGCCCGCTGTGCCCCAG < 41bp 1 0.140401040797392 1 0.23630428314209 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524235 chr1:55524248 nonsynonymous SNV . 0 34 hm5C_associated_SNPs_2869 1 0 1 0 2 PCSK9 chr1:55524320 5'GT 55524320 Upstream 73bp
chr1 55524248 55524248 1 + C T rs28362268 55524236 + 55524216 55524256 41 CCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAGA CCTACACGGATGGCCACAGCCGTCGCCCGCTGTGCCCCAGA < 41bp 1 0.535112025612918 1 0.402252674102783 experiment 0.929775948774163 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524236 chr1:55524248 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_2870 1 0 1 0 2 PCSK9 chr1:55524172 3'AG 55524172 Downstream 77bp
chr1 55524248 55524248 1 + C T rs28362268 55524236 + 55524216 55524256 41 CCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAGA CCTACACGGATGGCCACAGCCGTCGCCCGCTGTGCCCCAGA < 41bp 1 0.535112025612918 1 0.402252674102783 experiment 0.929775948774163 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524236 chr1:55524248 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_2870 1 0 1 0 2 PCSK9 chr1:55524320 5'GT 55524320 Upstream 73bp
chr1 59812016 59812016 1 + C T rs183693555 59811996 + 59811976 59812016 41 ACAGGATCAATGAGACCAAGCACAGTGTCCTCCAGTACGTC ACAGGATCAATGAGACCAAGCACAGTGTCCTCCAGTACGTT < 41bp 1 0.394154136902456 1 0.0583830177783966 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FGGY ENSG00000172456 CDS Human protein_coding chr1:59811996 chr1:59812016 synonymous SNV . 0 41 hm5C_associated_SNPs_2873 0 0 0 0 2 FGGY chr1:59811919 3'AG 59811919 Downstream 98bp
chr1 59812016 59812016 1 + C T rs183693555 59811996 + 59811976 59812016 41 ACAGGATCAATGAGACCAAGCACAGTGTCCTCCAGTACGTC ACAGGATCAATGAGACCAAGCACAGTGTCCTCCAGTACGTT < 41bp 1 0.394154136902456 1 0.0583830177783966 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FGGY ENSG00000172456 CDS Human protein_coding chr1:59811996 chr1:59812016 synonymous SNV . 0 41 hm5C_associated_SNPs_2873 0 0 0 0 2 FGGY chr1:59812070 5'GT 59812070 Upstream 55bp
chr1 62455935 62455935 1 + A G rs77717948 62455922 + 62455902 62455942 41 GATAAGAATGGACTTGGACTCAGCCTTGCTGGTAATAAAGA GATAAGAATGGACTTGGACTCAGCCTTGCTGGTGATAAAGA < 41bp 1 0.23787486029858 1 0.510276079177856 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PATJ ENSG00000132849 CDS Human protein_coding chr1:62455922 chr1:62455935 nonsynonymous SNV 0.993 4 34 hm5C_associated_SNPs_2876 0 0 1 0 1 PATJ chr1:62455840 3'AG 62455840 Downstream 96bp
chr1 62614029 62614029 1 + C T rs183715116 62614035 + 62614015 62614055 41 CTACCACCTTGGTTCGCCCACTGCTGAACACCATCCAGAAG CTACCACCTTGGTTTGCCCACTGCTGAACACCATCCAGAAG < 41bp 1 0.274161177575928 1 0.103326171636581 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PATJ ENSG00000132849 CDS Human protein_coding chr1:62614035 chr1:62614029 nonsynonymous SNV 0.050 2 15 hm5C_associated_SNPs_2877 0 0 0 0 1 PATJ chr1:62613956 3'AG 62613956 Downstream 74bp
chr1 63989296 63989296 1 + C T rs144554384 63989283 + 63989263 63989303 41 GAAGAGAATTGGCTGCGCTTCCTTGTTTGTGAGCTAGAATT GAAGAGAATTGGCTGCGCTTCCTTGTTTGTGAGTTAGAATT < 41bp 1 0.3084406420205 1 0.0348337292671204 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFCAB7 ENSG00000203965 UTR5 Human protein_coding chr1:63989283 chr1:63989296 . . 0 34 hm5C_associated_SNPs_2926 0 0 0 0 1 EFCAB7 chr1:63989305 5'GT 63989305 Upstream 10bp
chr1 63989296 63989296 1 + C T rs144554384 63989284 + 63989264 63989304 41 AAGAGAATTGGCTGCGCTTCCTTGTTTGTGAGCTAGAATTA AAGAGAATTGGCTGCGCTTCCTTGTTTGTGAGTTAGAATTA < 41bp 1 0.612611854604266 1 0.129309922456741 experiment 0.774776290791469 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFCAB7 ENSG00000203965 UTR5 Human protein_coding chr1:63989284 chr1:63989296 . . 0 33 hm5C_associated_SNPs_2927 0 0 0 0 1 EFCAB7 chr1:63989305 5'GT 63989305 Upstream 10bp
chr1 65147703 65147703 1 + T A rs575428264 65147716 + 65147696 65147736 41 ACTCGGTTTATAGCTGCGGTCATCGAACGACATGCACACAG ACTCGGTATATAGCTGCGGTCATCGAACGACATGCACACAG < 41bp 1 0.402512757301535 1 0.200894594192505 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65147716 chr1:65147703 nonsynonymous SNV 0.994 1 8 hm5C_associated_SNPs_2930 0 0 0 0 2 CACHD1 chr1:65147688 3'AG 65147688 Downstream 16bp
chr1 65147703 65147703 1 + T A rs575428264 65147716 + 65147696 65147736 41 ACTCGGTTTATAGCTGCGGTCATCGAACGACATGCACACAG ACTCGGTATATAGCTGCGGTCATCGAACGACATGCACACAG < 41bp 1 0.402512757301535 1 0.200894594192505 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65147716 chr1:65147703 nonsynonymous SNV 0.994 1 8 hm5C_associated_SNPs_2930 0 0 0 0 2 CACHD1 chr1:65147789 5'GT 65147789 Upstream 87bp
chr1 65147722 65147722 1 + A G rs140096828 65147716 + 65147696 65147736 41 ACTCGGTTTATAGCTGCGGTCATCGAACGACATGCACACAG ACTCGGTTTATAGCTGCGGTCATCGAGCGACATGCACACAG < 41bp 1 0.415686866899522 1 0.266761392354965 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65147716 chr1:65147722 synonymous SNV . 0 27 hm5C_associated_SNPs_2931 0 0 0 0 2 CACHD1 chr1:65147688 3'AG 65147688 Downstream 35bp
chr1 65147722 65147722 1 + A G rs140096828 65147716 + 65147696 65147736 41 ACTCGGTTTATAGCTGCGGTCATCGAACGACATGCACACAG ACTCGGTTTATAGCTGCGGTCATCGAGCGACATGCACACAG < 41bp 1 0.415686866899522 1 0.266761392354965 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65147716 chr1:65147722 synonymous SNV . 0 27 hm5C_associated_SNPs_2931 0 0 0 0 2 CACHD1 chr1:65147789 5'GT 65147789 Upstream 68bp
chr1 65871776 65871776 1 + T C rs61733018 65871792 + 65871772 65871812 41 TGCCTGGGGGCCAGAACGAACGTGGGAAAGGATCAAGTAAT TGCCCGGGGGCCAGAACGAACGTGGGAAAGGATCAAGTAAT < 41bp 1 0.572140504144428 1 0.408974289894104 experiment 0.855718991711143 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65871792 chr1:65871776 synonymous SNV . 0 5 hm5C_associated_SNPs_2933 0 0 0 0 1 DNAJC6 chr1:65871816 5'GT 65871816 Upstream 41bp
chr1 70687388 70687388 1 + T G rs575652474 70687374 + 70687354 70687394 41 GTCCGGGCCCCAGCGGCGGGCCCGGTGGCGGAGGTGGTGGT GTCCGGGCCCCAGCGGCGGGCCCGGTGGCGGAGGGGGTGGT < 41bp 1 0.748994742676042 1 0.531317234039307 experiment 0.502010514647916 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70687374 chr1:70687388 synonymous SNV . 0 35 hm5C_associated_SNPs_2936 0 0 1 0 2 SRSF11 chr1:70687295 3'AG 70687295 Downstream 94bp
chr1 70687388 70687388 1 + T G rs575652474 70687374 + 70687354 70687394 41 GTCCGGGCCCCAGCGGCGGGCCCGGTGGCGGAGGTGGTGGT GTCCGGGCCCCAGCGGCGGGCCCGGTGGCGGAGGGGGTGGT < 41bp 1 0.748994742676042 1 0.531317234039307 experiment 0.502010514647916 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70687374 chr1:70687388 synonymous SNV . 0 35 hm5C_associated_SNPs_2936 0 0 1 0 2 SRSF11 chr1:70687298 3'AG 70687298 Downstream 91bp
chr1 70687388 70687388 1 + T G rs575652474 70687375 + 70687355 70687395 41 TCCGGGCCCCAGCGGCGGGCCCGGTGGCGGAGGTGGTGGTG TCCGGGCCCCAGCGGCGGGCCCGGTGGCGGAGGGGGTGGTG < 41bp 1 0.75729395955928 1 0.479278415441513 experiment 0.485412080881439 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70687375 chr1:70687388 synonymous SNV . 0 34 hm5C_associated_SNPs_2937 0 0 1 0 2 SRSF11 chr1:70687295 3'AG 70687295 Downstream 94bp
chr1 70687388 70687388 1 + T G rs575652474 70687375 + 70687355 70687395 41 TCCGGGCCCCAGCGGCGGGCCCGGTGGCGGAGGTGGTGGTG TCCGGGCCCCAGCGGCGGGCCCGGTGGCGGAGGGGGTGGTG < 41bp 1 0.75729395955928 1 0.479278415441513 experiment 0.485412080881439 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70687375 chr1:70687388 synonymous SNV . 0 34 hm5C_associated_SNPs_2937 0 0 1 0 2 SRSF11 chr1:70687298 3'AG 70687298 Downstream 91bp
chr1 70700416 70700416 1 + C G rs144286981 70700412 + 70700392 70700432 41 CACTGGCTGCTTTGGGGGCTCCTACTCTTGATCCTGCCCTT CACTGGCTGCTTTGGGGGCTCCTAGTCTTGATCCTGCCCTT < 41bp 1 0.455865092130082 1 0.21676903963089 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70700412 chr1:70700416 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_2938 0 0 1 0 2 SRSF11 chr1:70700379 3'AG 70700379 Downstream 38bp
chr1 70700416 70700416 1 + C G rs144286981 70700412 + 70700392 70700432 41 CACTGGCTGCTTTGGGGGCTCCTACTCTTGATCCTGCCCTT CACTGGCTGCTTTGGGGGCTCCTAGTCTTGATCCTGCCCTT < 41bp 1 0.455865092130082 1 0.21676903963089 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70700412 chr1:70700416 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_2938 0 0 1 0 2 SRSF11 chr1:70700471 5'GT 70700471 Upstream 56bp
chr1 75214441 75214441 1 + A G rs1133891 75214439 + 75214419 75214459 41 TTTTATTTTCTTACAGCATTCCATGGCAATAGATTCTGGTT TTTTATTTTCTTACAGCATTCCGTGGCAATAGATTCTGGTT < 41bp 1 0.216088895804569 1 0.586026906967163 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TYW3 ENSG00000162623 CDS Human protein_coding chr1:75214439 chr1:75214441 nonsynonymous SNV 0.986 0 23 hm5C_associated_SNPs_2940 0 0 1 0 2 TYW3 chr1:75214435 3'AG 75214435 Downstream 7bp
chr1 75214441 75214441 1 + A G rs1133891 75214439 + 75214419 75214459 41 TTTTATTTTCTTACAGCATTCCATGGCAATAGATTCTGGTT TTTTATTTTCTTACAGCATTCCGTGGCAATAGATTCTGGTT < 41bp 1 0.216088895804569 1 0.586026906967163 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TYW3 ENSG00000162623 CDS Human protein_coding chr1:75214439 chr1:75214441 nonsynonymous SNV 0.986 0 23 hm5C_associated_SNPs_2940 0 0 1 0 2 TYW3 chr1:75214506 5'GT 75214506 Upstream 66bp
chr1 75214441 75214441 1 + A G rs1133891 75214440 + 75214420 75214460 41 TTTATTTTCTTACAGCATTCCATGGCAATAGATTCTGGTTT TTTATTTTCTTACAGCATTCCGTGGCAATAGATTCTGGTTT < 41bp 1 0.350822486308169 1 0.450814247131348 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TYW3 ENSG00000162623 CDS Human protein_coding chr1:75214440 chr1:75214441 nonsynonymous SNV 0.986 0 22 hm5C_associated_SNPs_2941 0 0 1 0 2 TYW3 chr1:75214435 3'AG 75214435 Downstream 7bp
chr1 75214441 75214441 1 + A G rs1133891 75214440 + 75214420 75214460 41 TTTATTTTCTTACAGCATTCCATGGCAATAGATTCTGGTTT TTTATTTTCTTACAGCATTCCGTGGCAATAGATTCTGGTTT < 41bp 1 0.350822486308169 1 0.450814247131348 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TYW3 ENSG00000162623 CDS Human protein_coding chr1:75214440 chr1:75214441 nonsynonymous SNV 0.986 0 22 hm5C_associated_SNPs_2941 0 0 1 0 2 TYW3 chr1:75214506 5'GT 75214506 Upstream 66bp
chr1 76253229 76253229 1 + T A rs3737573 76253245 + 76253225 76253265 41 ACACTTTGTTATTGGAGAAACATGCAGATTATATCGCATCC ACACATTGTTATTGGAGAAACATGCAGATTATATCGCATCC < 41bp 1 0.34928221048198 1 0.25756961107254 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76253245 chr1:76253229 synonymous SNV . 0 5 hm5C_associated_SNPs_2942 0 0 1 0 2 RABGGTB chr1:76253182 3'AG 76253182 Downstream 48bp
chr1 76253229 76253229 1 + T A rs3737573 76253245 + 76253225 76253265 41 ACACTTTGTTATTGGAGAAACATGCAGATTATATCGCATCC ACACATTGTTATTGGAGAAACATGCAGATTATATCGCATCC < 41bp 1 0.34928221048198 1 0.25756961107254 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76253245 chr1:76253229 synonymous SNV . 0 5 hm5C_associated_SNPs_2942 0 0 1 0 2 RABGGTB chr1:76253289 5'GT 76253289 Upstream 61bp
chr1 78001570 78001570 1 + G A rs151295675 78001588 + 78001568 78001608 41 TCGGCAGACACCATGACCAACCGCCTTCTCCAAAGGAGCCG TCAGCAGACACCATGACCAACCGCCTTCTCCAAAGGAGCCG < 41bp 1 0.15343936288478 1 0.0525141954421997 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001588 chr1:78001570 synonymous SNV . 0 3 hm5C_associated_SNPs_2946 0 0 0 0 1 AK5 chr1:78001532 3'AG 78001532 Downstream 39bp
chr1 91980461 91980461 1 + G A rs141732646 91980446 + 91980426 91980466 41 AAAAAAGAAGGCTATTTCTACAAAAGTTATGAATAGTGCTG AAAAAAGAAGGCTATTTCTACAAAAGTTATGAATAATGCTG < 41bp 1 0.646899924713888 1 0.239128202199936 experiment 0.706200150572223 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC7 ENSG00000097046 CDS Human protein_coding chr1:91980446 chr1:91980461 nonsynonymous SNV 0.878 1 36 hm5C_associated_SNPs_2958 0 0 1 0 1 CDC7 chr1:91980554 5'GT 91980554 Upstream 94bp
chr1 93297610 93297610 1 + C A rs368663464 93297617 + 93297597 93297637 41 CCTTTTCCCACCCCCTAGCGCCGCTGGGCCTGCAGGTCTCT CCTTTTCCCACCCACTAGCGCCGCTGGGCCTGCAGGTCTCT < 41bp 1 0.329539026085926 1 0.0492813587188721 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control RPL5 ENSG00000122406 UTR5 Human protein_coding chr1:93297617 chr1:93297610 . . 0 14 hm5C_associated_SNPs_2959 0 0 1 0 1 RPL5 chr1:93297674 5'GT 93297674 Upstream 65bp
chr1 93297620 93297620 1 + C G rs143326916 93297617 + 93297597 93297637 41 CCTTTTCCCACCCCCTAGCGCCGCTGGGCCTGCAGGTCTCT CCTTTTCCCACCCCCTAGCGCCGGTGGGCCTGCAGGTCTCT < 41bp 1 0.57385647532953 1 0.296470433473587 experiment 0.85228704934094 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control RPL5 ENSG00000122406 UTR5 Human protein_coding chr1:93297617 chr1:93297620 . . 0 24 hm5C_associated_SNPs_2960 1 0 1 0 1 RPL5 chr1:93297674 5'GT 93297674 Upstream 55bp
chr1 93297630 93297630 1 + A C rs145634330 93297617 + 93297597 93297637 41 CCTTTTCCCACCCCCTAGCGCCGCTGGGCCTGCAGGTCTCT CCTTTTCCCACCCCCTAGCGCCGCTGGGCCTGCCGGTCTCT < 41bp 1 0.399073654187168 1 0.0635941326618195 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control RPL5 ENSG00000122406 UTR5 Human protein_coding chr1:93297617 chr1:93297630 . . 0 34 hm5C_associated_SNPs_2961 1 0 1 0 1 RPL5 chr1:93297674 5'GT 93297674 Upstream 45bp
chr1 93297632 93297632 1 + G A rs569209548 93297617 + 93297597 93297637 41 CCTTTTCCCACCCCCTAGCGCCGCTGGGCCTGCAGGTCTCT CCTTTTCCCACCCCCTAGCGCCGCTGGGCCTGCAGATCTCT < 41bp 1 0.335893733351615 1 0.0633766949176788 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control RPL5 ENSG00000122406 UTR5 Human protein_coding chr1:93297617 chr1:93297632 . . 0 36 hm5C_associated_SNPs_2962 0 0 1 0 1 RPL5 chr1:93297674 5'GT 93297674 Upstream 43bp
chr1 94953157 94953157 1 + T C rs139507691 94953142 + 94953122 94953162 41 TTGTTTCGGTTTTCAATGGGCTTCATTGATAGTATTATTGC TTGTTTCGGTTTTCAATGGGCTTCATTGATAGTATCATTGC < 41bp 1 0.424571492631653 1 0.134978860616684 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94953142 chr1:94953157 synonymous SNV . 0 36 hm5C_associated_SNPs_2978 0 0 1 0 2 ABCD3 chr1:94953098 3'AG 94953098 Downstream 60bp
chr1 94953157 94953157 1 + T C rs139507691 94953142 + 94953122 94953162 41 TTGTTTCGGTTTTCAATGGGCTTCATTGATAGTATTATTGC TTGTTTCGGTTTTCAATGGGCTTCATTGATAGTATCATTGC < 41bp 1 0.424571492631653 1 0.134978860616684 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94953142 chr1:94953157 synonymous SNV . 0 36 hm5C_associated_SNPs_2978 0 0 1 0 2 ABCD3 chr1:94953167 5'GT 94953167 Upstream 11bp
chr1 100740485 100740485 1 + T C rs116538743 100740467 + 100740447 100740487 41 ATAAATTTAACTGAGCGTGGCTGTGTGACTAAGATATATGG ATAAATTTAACTGAGCGTGGCTGTGTGACTAAGATATACGG < 41bp 1 0.263087040549674 1 0.176771849393845 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RTCA ENSG00000137996 CDS Human protein_coding chr1:100740467 chr1:100740485 synonymous SNV . 0 39 hm5C_associated_SNPs_2979 0 0 1 0 1 RTCA chr1:100740521 5'GT 100740521 Upstream 37bp
chr1 109170871 109170871 1 + G T rs144437284 109170852 + 109170832 109170872 41 CTGTGGACATTCTAGAACATCAAGCTATGCAAGTCAGCAGT CTGTGGACATTCTAGAACATCAAGCTATGCAAGTCAGCATT < 41bp 1 0.589419502275471 1 0.473174840211868 experiment 0.821160995449059 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM102B ENSG00000162636 CDS Human protein_coding chr1:109170852 chr1:109170871 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_2981 0 0 0 0 2 FAM102B chr1:109170789 3'AG 109170789 Downstream 83bp
chr1 109170871 109170871 1 + G T rs144437284 109170852 + 109170832 109170872 41 CTGTGGACATTCTAGAACATCAAGCTATGCAAGTCAGCAGT CTGTGGACATTCTAGAACATCAAGCTATGCAAGTCAGCATT < 41bp 1 0.589419502275471 1 0.473174840211868 experiment 0.821160995449059 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM102B ENSG00000162636 CDS Human protein_coding chr1:109170852 chr1:109170871 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_2981 0 0 0 0 2 FAM102B chr1:109170884 5'GT 109170884 Upstream 14bp
chr1 109325301 109325301 1 + A G rs201792987 109325284 + 109325264 109325304 41 TTGACAGGGAAATTCCCAAGCTTATGAAAGAAATTTCATCA TTGACAGGGAAATTCCCAAGCTTATGAAAGAAATTTCGTCA < 41bp 1 0.199584564891104 1 0.0809610784053802 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109325284 chr1:109325301 synonymous SNV . 0 38 hm5C_associated_SNPs_2983 0 0 1 1 2 STXBP3 chr1:109325271 3'AG 109325271 Downstream 31bp
chr1 109325301 109325301 1 + A G rs201792987 109325284 + 109325264 109325304 41 TTGACAGGGAAATTCCCAAGCTTATGAAAGAAATTTCATCA TTGACAGGGAAATTCCCAAGCTTATGAAAGAAATTTCGTCA < 41bp 1 0.199584564891104 1 0.0809610784053802 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109325284 chr1:109325301 synonymous SNV . 0 38 hm5C_associated_SNPs_2983 0 0 1 1 2 STXBP3 chr1:109325328 5'GT 109325328 Upstream 28bp
chr1 109811554 109811554 1 + C T rs368143806 109811544 + 109811524 109811564 41 CAAAGGGAACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGG CAAAGGGAACTTTGCTGGGGCCAAGCTGCCTCGCTACGAGG < 41bp 1 0.0389080059575621 1 0.0776008367538452 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811544 chr1:109811554 synonymous SNV . 0 31 hm5C_associated_SNPs_3000 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 53bp
chr1 109811554 109811554 1 + C T rs368143806 109811544 + 109811524 109811564 41 CAAAGGGAACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGG CAAAGGGAACTTTGCTGGGGCCAAGCTGCCTCGCTACGAGG < 41bp 1 0.0389080059575621 1 0.0776008367538452 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811544 chr1:109811554 synonymous SNV . 0 31 hm5C_associated_SNPs_3000 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 77bp
chr1 109811554 109811554 1 + C T rs368143806 109811552 + 109811532 109811572 41 ACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGT ACTTTGCTGGGGCCAAGCTGCCTCGCTACGAGGCCCTGCGT < 41bp 1 0.084260873151751 1 0.075434535741806 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811552 chr1:109811554 synonymous SNV . 0 23 hm5C_associated_SNPs_3001 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 53bp
chr1 109811554 109811554 1 + C T rs368143806 109811552 + 109811532 109811572 41 ACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGT ACTTTGCTGGGGCCAAGCTGCCTCGCTACGAGGCCCTGCGT < 41bp 1 0.084260873151751 1 0.075434535741806 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811552 chr1:109811554 synonymous SNV . 0 23 hm5C_associated_SNPs_3001 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 77bp
chr1 109811554 109811554 1 + C T rs368143806 109811553 + 109811533 109811573 41 CTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTG CTTTGCTGGGGCCAAGCTGCCTCGCTACGAGGCCCTGCGTG < 41bp 1 0.479189482700713 1 0.385519325733185 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811553 chr1:109811554 synonymous SNV . 0 22 hm5C_associated_SNPs_3002 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 53bp
chr1 109811554 109811554 1 + C T rs368143806 109811553 + 109811533 109811573 41 CTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTG CTTTGCTGGGGCCAAGCTGCCTCGCTACGAGGCCCTGCGTG < 41bp 1 0.479189482700713 1 0.385519325733185 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811553 chr1:109811554 synonymous SNV . 0 22 hm5C_associated_SNPs_3002 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 77bp
chr1 109811554 109811554 1 + C T rs368143806 109811555 + 109811535 109811575 41 TTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGGG TTGCTGGGGCCAAGCTGCCTCGCTACGAGGCCCTGCGTGGG < 41bp 1 0.394925075508853 1 0.79572606086731 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811555 chr1:109811554 synonymous SNV . 0 20 hm5C_associated_SNPs_3003 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 53bp
chr1 109811554 109811554 1 + C T rs368143806 109811555 + 109811535 109811575 41 TTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGGG TTGCTGGGGCCAAGCTGCCTCGCTACGAGGCCCTGCGTGGG < 41bp 1 0.394925075508853 1 0.79572606086731 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811555 chr1:109811554 synonymous SNV . 0 20 hm5C_associated_SNPs_3003 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 77bp
chr1 109811571 109811571 1 + G A rs79850681 109811552 + 109811532 109811572 41 ACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGT ACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCAT < 41bp 1 0.227079380529454 1 0.102236896753311 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811552 chr1:109811571 nonsynonymous SNV 0.849 0 40 hm5C_associated_SNPs_3004 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 70bp
chr1 109811571 109811571 1 + G A rs79850681 109811552 + 109811532 109811572 41 ACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGT ACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCAT < 41bp 1 0.227079380529454 1 0.102236896753311 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811552 chr1:109811571 nonsynonymous SNV 0.849 0 40 hm5C_associated_SNPs_3004 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 60bp
chr1 109811571 109811571 1 + G A rs79850681 109811553 + 109811533 109811573 41 CTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTG CTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCATG < 41bp 1 0.230377629404351 1 0.229484468698502 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811553 chr1:109811571 nonsynonymous SNV 0.849 0 39 hm5C_associated_SNPs_3005 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 70bp
chr1 109811571 109811571 1 + G A rs79850681 109811553 + 109811533 109811573 41 CTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTG CTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCATG < 41bp 1 0.230377629404351 1 0.229484468698502 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811553 chr1:109811571 nonsynonymous SNV 0.849 0 39 hm5C_associated_SNPs_3005 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 60bp
chr1 109811571 109811571 1 + G A rs79850681 109811554 + 109811534 109811574 41 TTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGG TTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCATGG < 41bp 1 0.139049412355478 1 0.181981414556503 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811554 chr1:109811571 nonsynonymous SNV 0.849 0 38 hm5C_associated_SNPs_3006 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 70bp
chr1 109811571 109811571 1 + G A rs79850681 109811554 + 109811534 109811574 41 TTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGG TTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCATGG < 41bp 1 0.139049412355478 1 0.181981414556503 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811554 chr1:109811571 nonsynonymous SNV 0.849 0 38 hm5C_associated_SNPs_3006 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 60bp
chr1 109811571 109811571 1 + G A rs79850681 109811555 + 109811535 109811575 41 TTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGGG TTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCATGGG < 41bp 1 0.294107585785711 1 0.416620969772339 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811555 chr1:109811571 nonsynonymous SNV 0.849 0 37 hm5C_associated_SNPs_3007 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 70bp
chr1 109811571 109811571 1 + G A rs79850681 109811555 + 109811535 109811575 41 TTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGGG TTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCATGGG < 41bp 1 0.294107585785711 1 0.416620969772339 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811555 chr1:109811571 nonsynonymous SNV 0.849 0 37 hm5C_associated_SNPs_3007 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 60bp
chr1 109814011 109814011 1 + G A rs141656858 109814010 + 109813990 109814030 41 GCCTGTCCCTATCCCCAGCTCGGGCCTGCAGCCCTCCTTCG GCCTGTCCCTATCCCCAGCTCAGGCCTGCAGCCCTCCTTCG < 41bp 1 0.398380929126276 1 0.748953700065613 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109814010 chr1:109814011 synonymous SNV . 0 22 hm5C_associated_SNPs_3008 0 0 0 0 1 CELSR2 chr1:109814008 3'AG 109814008 Downstream 4bp
chr1 110170102 110170102 1 + C T rs141396033 110170120 + 110170100 110170140 41 GACGTCAATGTGCTGATGGCCCTGATTATCAATGGCCCCAT GATGTCAATGTGCTGATGGCCCTGATTATCAATGGCCCCAT < 41bp 1 0.4803430247478 1 0.0302222073078156 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110170120 chr1:110170102 synonymous SNV . 0 3 hm5C_associated_SNPs_3010 0 0 1 0 2 AMPD2 chr1:110170051 3'AG 110170051 Downstream 52bp
chr1 110170102 110170102 1 + C T rs141396033 110170120 + 110170100 110170140 41 GACGTCAATGTGCTGATGGCCCTGATTATCAATGGCCCCAT GATGTCAATGTGCTGATGGCCCTGATTATCAATGGCCCCAT < 41bp 1 0.4803430247478 1 0.0302222073078156 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110170120 chr1:110170102 synonymous SNV . 0 3 hm5C_associated_SNPs_3010 0 0 1 0 2 AMPD2 chr1:110170140 5'GT 110170140 Upstream 39bp
chr1 110170103 110170103 1 + G A rs553822688 110170120 + 110170100 110170140 41 GACGTCAATGTGCTGATGGCCCTGATTATCAATGGCCCCAT GACATCAATGTGCTGATGGCCCTGATTATCAATGGCCCCAT < 41bp 1 0.426864022661766 1 0.0307740271091461 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110170120 chr1:110170103 nonsynonymous SNV 0.999 2 4 hm5C_associated_SNPs_3011 0 0 1 0 2 AMPD2 chr1:110170051 3'AG 110170051 Downstream 53bp
chr1 110170103 110170103 1 + G A rs553822688 110170120 + 110170100 110170140 41 GACGTCAATGTGCTGATGGCCCTGATTATCAATGGCCCCAT GACATCAATGTGCTGATGGCCCTGATTATCAATGGCCCCAT < 41bp 1 0.426864022661766 1 0.0307740271091461 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110170120 chr1:110170103 nonsynonymous SNV 0.999 2 4 hm5C_associated_SNPs_3011 0 0 1 0 2 AMPD2 chr1:110170140 5'GT 110170140 Upstream 38bp
chr1 110172953 110172953 1 + G A rs201580843 110172951 + 110172931 110172971 41 TCCTCAGCTATCACCGGAATCCGCTACCGGAGTACCTGTCC TCCTCAGCTATCACCGGAATCCACTACCGGAGTACCTGTCC < 41bp 1 0.144809760067795 1 0.214054763317108 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110172951 chr1:110172953 synonymous SNV . 0 23 hm5C_associated_SNPs_3012 0 0 0 0 1 AMPD2 chr1:110172855 3'AG 110172855 Downstream 99bp
chr1 110210740 110210740 1 + G A rs201905887 110210743 + 110210723 110210763 41 ACAGCAACCAGCACCATGCCCATGACACTGGGGTACTGGAA ACAGCAACCAGCACCATACCCATGACACTGGGGTACTGGAA < 41bp 1 0.722795380766819 1 0.166840106248856 experiment 0.554409238466361 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GSTM2 ENSG00000213366 CDS Human protein_coding chr1:110210743 chr1:110210740 nonsynonymous SNV 0.035 2 18 hm5C_associated_SNPs_3013 0 0 1 2 1 GSTM2 chr1:110210773 5'GT 110210773 Upstream 34bp
chr1 110559005 110559005 1 + G A rs141465433 110558996 + 110558976 110559016 41 CTCTCCAAAGCTGGGAAGCTCTGTGTTCCGGCCATGAACGT CTCTCCAAAGCTGGGAAGCTCTGTGTTCCAGCCATGAACGT < 41bp 1 0.492094931007108 1 0.136383891105652 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient AHCYL1 ENSG00000168710 CDS Human protein_coding chr1:110558996 chr1:110559005 synonymous SNV . 0 30 hm5C_associated_SNPs_3015 0 0 1 0 2 AHCYL1 chr1:110558966 3'AG 110558966 Downstream 40bp
chr1 110559005 110559005 1 + G A rs141465433 110558996 + 110558976 110559016 41 CTCTCCAAAGCTGGGAAGCTCTGTGTTCCGGCCATGAACGT CTCTCCAAAGCTGGGAAGCTCTGTGTTCCAGCCATGAACGT < 41bp 1 0.492094931007108 1 0.136383891105652 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient AHCYL1 ENSG00000168710 CDS Human protein_coding chr1:110558996 chr1:110559005 synonymous SNV . 0 30 hm5C_associated_SNPs_3015 0 0 1 0 2 AHCYL1 chr1:110559082 5'GT 110559082 Upstream 78bp
chr1 113241052 113241052 1 + T C rs2306940 113241053 + 113241033 113241073 41 CCTCCAAGAAGGGCAAAGCTCGCCTGAGCCCTCGAAGTGTG CCTCCAAGAAGGGCAAAGCCCGCCTGAGCCCTCGAAGTGTG < 41bp 1 0.618324076168415 1 0.195704400539398 experiment 0.76335184766317 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113241053 chr1:113241052 synonymous SNV . 0 20 hm5C_associated_SNPs_3026 0 0 1 0 1 MOV10 chr1:113241100 5'GT 113241100 Upstream 49bp
chr1 116916064 116916064 1 + A C rs546221648 116916081 + 116916061 116916101 41 GGGAGCTGCTCTGTGCTTTTCTCTCTGATTCTCCAGCGACA GGGCGCTGCTCTGTGCTTTTCTCTCTGATTCTCCAGCGACA < 41bp 1 0.292916264006076 1 0.184197992086411 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP1A1 ENSG00000269279 CDS Human other chr1:116916081 chr1:116916064 synonymous SNV . 0 4 hm5C_associated_SNPs_3030 0 0 1 0 1 ATP1A1 chr1:116916145 5'GT 116916145 Upstream 82bp
chr1 116942068 116942068 1 + G A rs145603535 116942086 + 116942066 116942106 41 GAGCAGGCTGAGAGTGACATCATGAAGAGACAGCCCAGAAA GAACAGGCTGAGAGTGACATCATGAAGAGACAGCCCAGAAA < 41bp 1 0.656109645023465 1 0.313202261924744 experiment 0.687780709953069 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116942086 chr1:116942068 synonymous SNV . 0 3 hm5C_associated_SNPs_3031 0 0 1 0 2 ATP1A1 chr1:116942042 3'AG 116942042 Downstream 27bp
chr1 116942068 116942068 1 + G A rs145603535 116942086 + 116942066 116942106 41 GAGCAGGCTGAGAGTGACATCATGAAGAGACAGCCCAGAAA GAACAGGCTGAGAGTGACATCATGAAGAGACAGCCCAGAAA < 41bp 1 0.656109645023465 1 0.313202261924744 experiment 0.687780709953069 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116942086 chr1:116942068 synonymous SNV . 0 3 hm5C_associated_SNPs_3031 0 0 1 0 2 ATP1A1 chr1:116942165 5'GT 116942165 Upstream 98bp
chr1 117602960 117602960 1 + C A rs2244501 117602962 + 117602942 117602982 41 TTTGTGGAACTTGGGGGACCCAGCGAAATGGAAGAAGTTAG TTTGTGGAACTTGGGGGAACCAGCGAAATGGAAGAAGTTAG < 41bp 1 0.685923452880355 1 0.736413061618805 experiment 0.628153094239289 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTF2 ENSG00000116830 UTR5 Human protein_coding chr1:117602962 chr1:117602960 . . 0 19 hm5C_associated_SNPs_3033 0 0 1 0 1 TTF2 chr1:117602996 5'GT 117602996 Upstream 37bp
chr1 117602965 117602965 1 + C A rs202173875 117602962 + 117602942 117602982 41 TTTGTGGAACTTGGGGGACCCAGCGAAATGGAAGAAGTTAG TTTGTGGAACTTGGGGGACCCAGAGAAATGGAAGAAGTTAG < 41bp 1 0.640434162969632 1 0.788447856903076 experiment 0.719131674060735 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTF2 ENSG00000116830 UTR5 Human protein_coding chr1:117602962 chr1:117602965 . . 0 24 hm5C_associated_SNPs_3034 0 0 1 0 1 TTF2 chr1:117602996 5'GT 117602996 Upstream 32bp
chr1 118493462 118493462 1 + T C rs191049418 118493480 + 118493460 118493500 41 TTTCTGTCACTGTATGGACACAAACTGCCTGTTATATGCAT TTCCTGTCACTGTATGGACACAAACTGCCTGTTATATGCAT < 41bp 1 0.10461335260195 1 0.0867970287799835 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR3 ENSG00000065183 CDS Human protein_coding chr1:118493480 chr1:118493462 synonymous SNV . 0 3 hm5C_associated_SNPs_3037 0 0 1 0 2 WDR3 chr1:118493457 3'AG 118493457 Downstream 6bp
chr1 118493462 118493462 1 + T C rs191049418 118493480 + 118493460 118493500 41 TTTCTGTCACTGTATGGACACAAACTGCCTGTTATATGCAT TTCCTGTCACTGTATGGACACAAACTGCCTGTTATATGCAT < 41bp 1 0.10461335260195 1 0.0867970287799835 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR3 ENSG00000065183 CDS Human protein_coding chr1:118493480 chr1:118493462 synonymous SNV . 0 3 hm5C_associated_SNPs_3037 0 0 1 0 2 WDR3 chr1:118493513 5'GT 118493513 Upstream 52bp
chr1 118499792 118499792 1 + T C rs199890965 118499775 + 118499755 118499795 41 AACGAATTCATTCAGCTGGGCTCTGATGTTGAACTTATATG AACGAATTCATTCAGCTGGGCTCTGATGTTGAACTTACATG < 41bp 1 0.175781005663131 1 0.0594446063041687 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR3 ENSG00000065183 CDS Human protein_coding chr1:118499775 chr1:118499792 nonsynonymous SNV 0.025 1 38 hm5C_associated_SNPs_3038 0 0 1 0 1 WDR3 chr1:118499819 5'GT 118499819 Upstream 28bp
chr1 144014058 144014058 1 + G A rs587603097 144014050 + 144014030 144014070 41 ACCTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGC ACCTGGAGAAGCTGGCAGAACGCTTCCTAGCCAAGACATGC < 41bp 1 0.176017306332367 1 0.254496604204178 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014050 chr1:144014058 . . 0 29 hm5C_associated_SNPs_3043 0 0 1 0 1 FAM72C;NBPF20 chr1:144014093 5'GT 144014093 Upstream 36bp
chr1 144014058 144014058 1 + G A rs587603097 144014052 + 144014032 144014072 41 CTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGCAG CTGGAGAAGCTGGCAGAACGCTTCCTAGCCAAGACATGCAG < 41bp 1 0.240507213629477 1 0.529560029506683 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014052 chr1:144014058 . . 0 27 hm5C_associated_SNPs_3044 0 0 1 0 1 FAM72C;NBPF20 chr1:144014093 5'GT 144014093 Upstream 36bp
chr1 145017916 145017916 1 - G A rs587663091 145017910 - 145017890 145017930 41 TGCTTTTTCTTGGGCTCCTTCTGGCAAGTTGGCAGAACGAA TGCTTTTTCTTGGGTTCCTTCTGGCAAGTTGGCAGAACGAA < 41bp 1 0.400640810777936 1 0.635618925094604 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC100996724 ENSG00000178104 UTR3 Human protein_coding chr1:145017910 chr1:145017916 . . 0 15 hm5C_associated_SNPs_3046 0 0 0 0 1 LOC100996724 chr1:145018002 3'AG 145018002 Downstream 87bp
chr1 145017916 145017916 1 - G A rs587663091 145017913 - 145017893 145017933 41 GGGTGCTTTTTCTTGGGCTCCTTCTGGCAAGTTGGCAGAAC GGGTGCTTTTTCTTGGGTTCCTTCTGGCAAGTTGGCAGAAC < 41bp 1 0.253635981898726 1 0.0626510083675385 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC100996724 ENSG00000178104 UTR3 Human protein_coding chr1:145017913 chr1:145017916 . . 0 18 hm5C_associated_SNPs_3047 0 0 0 0 1 LOC100996724 chr1:145018002 3'AG 145018002 Downstream 87bp
chr1 145115800 145115800 1 + T C rs587606098 145115809 + 145115789 145115829 41 ATGCGAAGTACTTGAACATGCATTCCACTTATGCCAAACTT ATGCGAAGTACCTGAACATGCATTCCACTTATGCCAAACTT < 41bp 1 0.0542264323024266 1 0.0520366728305817 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC22B ENSG00000223380 ncRNA_exonic Human other chr1:145115809 chr1:145115800 . . 0 12 hm5C_associated_SNPs_3048 0 0 1 0 1 SEC22B chr1:145115735 3'AG 145115735 Downstream 66bp
chr1 145325997 145325997 1 + A G rs199988926 145325991 + 145325971 145326011 41 GATGAGAAAGGGCCTGAAGTCTTGCAAGACTCACTGGATAG GATGAGAAAGGGCCTGAAGTCTTGCAGGACTCACTGGATAG < 41bp 1 0.164588822222799 1 0.122866868972778 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NBPF10 ENSG00000163386 CDS Human other chr1:145325991 chr1:145325997 synonymous SNV . 0 27 hm5C_associated_SNPs_3050 0 0 0 0 1 NBPF10 chr1:145325952 3'AG 145325952 Downstream 46bp
chr1 145325999 145325999 1 + A G rs189214440 145325991 + 145325971 145326011 41 GATGAGAAAGGGCCTGAAGTCTTGCAAGACTCACTGGATAG GATGAGAAAGGGCCTGAAGTCTTGCAAGGCTCACTGGATAG < 41bp 1 0.178851418433182 1 0.173345565795898 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NBPF10 ENSG00000163386 CDS Human other chr1:145325991 chr1:145325999 nonsynonymous SNV . 0 29 hm5C_associated_SNPs_3051 0 0 0 0 1 NBPF10 chr1:145325952 3'AG 145325952 Downstream 48bp
chr1 145368524 145368524 1 + A T rs111770733 145368536 + 145368516 145368556 41 GTCAATGTACTTTGAACTACCTGACTCATTCCAGCACTACA GTCAATGTTCTTTGAACTACCTGACTCATTCCAGCACTACA < 41bp 1 0.0824220212964991 1 0.092308521270752 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBPF9 ENSG00000163386 CDS Human other chr1:145368536 chr1:145368524 nonsynonymous SNV . 0 9 hm5C_associated_SNPs_3052 0 0 0 0 1 NBPF9 chr1:145368441 3'AG 145368441 Downstream 84bp
chr1 145368524 145368524 1 + A T rs111770733 145368540 + 145368520 145368560 41 ATGTACTTTGAACTACCTGACTCATTCCAGCACTACAGAAG ATGTTCTTTGAACTACCTGACTCATTCCAGCACTACAGAAG < 41bp 1 0.0732806024877693 1 0.0883234739303589 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NBPF9 ENSG00000163386 CDS Human other chr1:145368540 chr1:145368524 nonsynonymous SNV . 0 5 hm5C_associated_SNPs_3053 0 0 0 0 1 NBPF9 chr1:145368441 3'AG 145368441 Downstream 84bp
chr1 145507646 145507646 1 + G A rs139428292 145507631 + 145507611 145507651 41 TTTCCCGAGGTACCTAGTGTCTGAGCGGCACAGACGAGATC TTTCCCGAGGTACCTAGTGTCTGAGCGGCACAGACAAGATC < 41bp 1 0.402445173326752 1 0.387574851512909 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LIX1L-AS1 ENSG00000234222 ncRNA_exonic Human other chr1:145507631 chr1:145507646 . . 0 36 hm5C_associated_SNPs_3055 2 0 0 0 1 RBM8A chr1:145507733 5'GT 145507733 Upstream 88bp
chr1 145507646 145507646 1 + G A rs139428292 145507636 + 145507616 145507656 41 CGAGGTACCTAGTGTCTGAGCGGCACAGACGAGATCTCGAT CGAGGTACCTAGTGTCTGAGCGGCACAGACAAGATCTCGAT < 41bp 1 0.576579385764312 1 0.678073644638062 experiment 0.846841228471377 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LIX1L-AS1 ENSG00000234222 ncRNA_exonic Human other chr1:145507636 chr1:145507646 . . 0 31 hm5C_associated_SNPs_3056 2 0 0 0 1 RBM8A chr1:145507733 5'GT 145507733 Upstream 88bp
chr1 145509217 145509217 1 + C G rs12079762 145509206 + 145509186 145509226 41 GAAGTCCAGACCGGAGACGTCGCTGACAGGTCCTCTGTTGT GAAGTCCAGACCGGAGACGTCGCTGACAGGTGCTCTGTTGT < 41bp 1 0.180716429977014 1 0.255187481641769 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM8A ENSG00000131795 UTR3 Human other chr1:145509206 chr1:145509217 . . 0 32 hm5C_associated_SNPs_3057 1 0 0 0 1 RBM8A chr1:145509166 3'AG 145509166 Downstream 52bp
chr1 145509236 145509236 1 + C G rs201860373 145509238 + 145509218 145509258 41 CTCTGTTGTCCAGGTGTTCTCTTCAAGATTCCATTTGACCA CTCTGTTGTCCAGGTGTTGTCTTCAAGATTCCATTTGACCA < 41bp 1 0.181030128524424 1 0.367906630039215 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM8A ENSG00000131795 UTR3 Human other chr1:145509238 chr1:145509236 . . 0 19 hm5C_associated_SNPs_3058 0 0 0 0 1 RBM8A chr1:145509166 3'AG 145509166 Downstream 71bp
chr1 145518136 145518136 1 + G A rs587764801 145518156 + 145518136 145518176 41 GTTGTCCTGAGATTCTGCATCACTGTTAGTCACCTCAATCG ATTGTCCTGAGATTCTGCATCACTGTTAGTCACCTCAATCG < 41bp 1 0.209843339196327 1 0.0676871538162231 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PEX11B ENSG00000131779 CDS Human protein_coding chr1:145518156 chr1:145518136 nonsynonymous SNV . 0 1 hm5C_associated_SNPs_3059 0 0 1 0 1 PEX11B chr1:145518071 3'AG 145518071 Downstream 66bp
chr1 150280546 150280546 1 + C T rs10480 150280549 + 150280529 150280569 41 ATTATGAGAAGCCATGCCGCCGGCGACAGAGGGAAAGCTAT ATTATGAGAAGCCATGCTGCCGGCGACAGAGGGAAAGCTAT < 41bp 1 0.774242479748423 1 0.777082085609436 experiment 0.451515040503154 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPS21 ENSG00000187145 CDS Human other chr1:150280549 chr1:150280546 nonsynonymous SNV . 0 18 hm5C_associated_SNPs_3077 0 0 1 0 1 MRPS21 chr1:150280482 3'AG 150280482 Downstream 65bp
chr1 150280550 150280550 1 + G A rs4845 150280549 + 150280529 150280569 41 ATTATGAGAAGCCATGCCGCCGGCGACAGAGGGAAAGCTAT ATTATGAGAAGCCATGCCGCCAGCGACAGAGGGAAAGCTAT < 41bp 1 0.650533149233575 1 0.658293843269348 experiment 0.698933701532851 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPS21 ENSG00000187145 CDS Human other chr1:150280549 chr1:150280550 nonsynonymous SNV 0.557 0 22 hm5C_associated_SNPs_3078 0 0 1 0 1 MRPS21 chr1:150280482 3'AG 150280482 Downstream 69bp
chr1 150470990 150470990 1 + C T rs41264465 150470979 + 150470959 150470999 41 CTCTGCACCCCAACCTCAGCCTGATGTTCGCCCACCGGCCC CTCTGCACCCCAACCTCAGCCTGATGTTCGCTCACCGGCCC < 41bp 1 0.64616877281113 1 0.423715382814407 experiment 0.70766245437774 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TARS2 ENSG00000143374 CDS Human protein_coding chr1:150470979 chr1:150470990 synonymous SNV . 0 32 hm5C_associated_SNPs_3079 1 0 1 0 1 TARS2 chr1:150470978 3'AG 150470978 Downstream 13bp
chr1 151633309 151633309 1 + A G rs146222009 151633305 + 151633285 151633325 41 CGAGTAATTGGTGAGAGTGACATCATGCAGGAATTCCTATC CGAGTAATTGGTGAGAGTGACATCGTGCAGGAATTCCTATC < 41bp 1 0.210035530562388 1 0.284423172473907 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX27 ENSG00000143376 CDS Human protein_coding chr1:151633305 chr1:151633309 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_3090 0 0 1 0 1 SNX27 chr1:151633338 5'GT 151633338 Upstream 30bp
chr1 153606479 153606479 1 - G A rs144899251 153606482 - 153606462 153606502 41 AATTACGTCAGGCGTCAGATCCGCGCACGACTAGAGGGCGG AATTACGTCAGGCGTCAGATCCGTGCACGACTAGAGGGCGG < 41bp 1 0.437714448436946 1 0.676311731338501 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control CHTOP;S100A13 ENSG00000271853;ENSG00000272030 ncRNA_exonic Human other chr1:153606482 chr1:153606479 . . 0 24 hm5C_associated_SNPs_3092 0 0 0 0 1 S100A13 chr1:153606434 5'GT 153606434 Upstream 46bp
chr1 153606479 153606479 1 - G A rs144899251 153606494 - 153606474 153606514 41 TGGCGTCTACGCAATTACGTCAGGCGTCAGATCCGCGCACG TGGCGTCTACGCAATTACGTCAGGCGTCAGATCCGTGCACG < 41bp 1 0.582113189151709 1 0.798675298690796 experiment 0.835773621696583 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHTOP;S100A13 ENSG00000271853;ENSG00000272030 ncRNA_exonic Human other chr1:153606494 chr1:153606479 . . 0 36 hm5C_associated_SNPs_3093 0 0 0 0 1 S100A13 chr1:153606434 5'GT 153606434 Upstream 46bp
chr1 153617544 153617544 1 + G A rs145696354 153617536 + 153617516 153617556 41 TTTTTTTTTTCCCCTTTGGGCCAGGTCGGGGTATGATAGGT TTTTTTTTTTCCCCTTTGGGCCAGGTCGAGGTATGATAGGT < 41bp 1 0.121420298086718 1 0.401510775089264 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHTOP ENSG00000160679 CDS Human protein_coding chr1:153617536 chr1:153617544 synonymous SNV 1.000 0 29 hm5C_associated_SNPs_3096 0 0 1 0 1 CHTOP chr1:153617540 3'AG 153617540 Downstream 5bp
chr1 153617544 153617544 1 + G A rs145696354 153617537 + 153617517 153617557 41 TTTTTTTTTCCCCTTTGGGCCAGGTCGGGGTATGATAGGTC TTTTTTTTTCCCCTTTGGGCCAGGTCGAGGTATGATAGGTC < 41bp 1 0.152472024080784 1 0.462268024682999 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CHTOP ENSG00000160679 CDS Human protein_coding chr1:153617537 chr1:153617544 synonymous SNV 1.000 0 28 hm5C_associated_SNPs_3097 0 0 1 0 1 CHTOP chr1:153617540 3'AG 153617540 Downstream 5bp
chr1 153700661 153700661 1 + C T rs185043588 153700652 + 153700632 153700672 41 AGGGGCCGGATCCAAAGGCGCTGCACTCCCCAAGCCTTGGG AGGGGCCGGATCCAAAGGCGCTGCACTCCTCAAGCCTTGGG < 41bp 1 0.530451953183745 1 0.230172395706177 experiment 0.93909609363251 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INTS3 ENSG00000143624 UTR5 Human protein_coding chr1:153700652 chr1:153700661 . . 0 30 hm5C_associated_SNPs_3111 0 0 0 0 1 INTS3 chr1:153700687 5'GT 153700687 Upstream 27bp
chr1 153750339 153750339 1 + G A rs77673307 153750343 + 153750323 153750363 41 ATTGGGGAGCTGTGCCGATACCTTGTCAACCAGCCCCCGGT ATTGGGGAGCTGTGCCAATACCTTGTCAACCAGCCCCCGGT < 41bp 1 0.27113893117988 1 0.161472916603088 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750343 chr1:153750339 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_3112 0 0 0 0 1 SLC27A3 chr1:153750361 5'GT 153750361 Upstream 23bp
chr1 153750650 153750650 1 + G A rs35102232 153750644 + 153750624 153750664 41 CCACTCATCTCAGAGCAAGGCAGAACGTGGCCATAAGGTCC CCACTCATCTCAGAGCAAGGCAGAACATGGCCATAAGGTCC < 41bp 1 0.571045305011798 1 0.359533965587616 experiment 0.857909389976405 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750644 chr1:153750650 nonsynonymous SNV 0.082 0 27 hm5C_associated_SNPs_3113 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 14bp
chr1 153750650 153750650 1 + G A rs35102232 153750649 + 153750629 153750669 41 CATCTCAGAGCAAGGCAGAACGTGGCCATAAGGTCCGGCTG CATCTCAGAGCAAGGCAGAACATGGCCATAAGGTCCGGCTG < 41bp 1 0.548797198974784 1 0.446226626634598 experiment 0.902405602050432 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750649 chr1:153750650 nonsynonymous SNV 0.082 0 22 hm5C_associated_SNPs_3114 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 14bp
chr1 153750650 153750650 1 + G A rs35102232 153750655 + 153750635 153750675 41 AGAGCAAGGCAGAACGTGGCCATAAGGTCCGGCTGGCAGTG AGAGCAAGGCAGAACATGGCCATAAGGTCCGGCTGGCAGTG < 41bp 1 0.532118945981695 1 0.133196800947189 experiment 0.935762108036611 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750655 chr1:153750650 nonsynonymous SNV 0.082 0 16 hm5C_associated_SNPs_3115 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 14bp
chr1 153750650 153750650 1 + G A rs35102232 153750663 + 153750643 153750683 41 GCAGAACGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGG GCAGAACATGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGG < 41bp 1 0.470408136637252 1 0.413161635398865 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750663 chr1:153750650 nonsynonymous SNV 0.082 0 8 hm5C_associated_SNPs_3116 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 14bp
chr1 153750650 153750650 1 + G A rs35102232 153750667 + 153750647 153750687 41 AACGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGGGCTG AACATGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGGGCTG < 41bp 1 0.363500217725206 1 0.0986951291561127 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750667 chr1:153750650 nonsynonymous SNV 0.082 0 4 hm5C_associated_SNPs_3117 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 14bp
chr1 153750665 153750665 1 + G A rs141932545 153750649 + 153750629 153750669 41 CATCTCAGAGCAAGGCAGAACGTGGCCATAAGGTCCGGCTG CATCTCAGAGCAAGGCAGAACGTGGCCATAAGGTCCAGCTG < 41bp 1 0.564954610977087 1 0.430969476699829 experiment 0.870090778045826 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750649 chr1:153750665 nonsynonymous SNV 0.985 4 37 hm5C_associated_SNPs_3118 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 29bp
chr1 153750665 153750665 1 + G A rs141932545 153750655 + 153750635 153750675 41 AGAGCAAGGCAGAACGTGGCCATAAGGTCCGGCTGGCAGTG AGAGCAAGGCAGAACGTGGCCATAAGGTCCAGCTGGCAGTG < 41bp 1 0.574251335085471 1 0.100826799869537 experiment 0.851497329829058 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750655 chr1:153750665 nonsynonymous SNV 0.985 4 31 hm5C_associated_SNPs_3119 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 29bp
chr1 153750665 153750665 1 + G A rs141932545 153750663 + 153750643 153750683 41 GCAGAACGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGG GCAGAACGTGGCCATAAGGTCCAGCTGGCAGTGGGCAGCGG < 41bp 1 0.350986247041877 1 0.178392231464386 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750663 chr1:153750665 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_3120 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 29bp
chr1 153750665 153750665 1 + G A rs141932545 153750667 + 153750647 153750687 41 AACGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGGGCTG AACGTGGCCATAAGGTCCAGCTGGCAGTGGGCAGCGGGCTG < 41bp 1 0.449089270600306 1 0.245372503995895 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750667 chr1:153750665 nonsynonymous SNV 0.985 4 19 hm5C_associated_SNPs_3121 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 29bp
chr1 153750665 153750665 1 + G A rs141932545 153750678 + 153750658 153750698 41 AAGGTCCGGCTGGCAGTGGGCAGCGGGCTGCGCCCAGATAC AAGGTCCAGCTGGCAGTGGGCAGCGGGCTGCGCCCAGATAC < 41bp 1 0.736880129857281 1 0.864182770252228 experiment 0.526239740285438 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750678 chr1:153750665 nonsynonymous SNV 0.985 4 8 hm5C_associated_SNPs_3122 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 29bp
chr1 153750665 153750665 1 + G A rs141932545 153750685 + 153750665 153750705 41 GGCTGGCAGTGGGCAGCGGGCTGCGCCCAGATACCTGGGAG AGCTGGCAGTGGGCAGCGGGCTGCGCCCAGATACCTGGGAG < 41bp 1 0.780228231752768 1 0.451269686222076 experiment 0.439543536494464 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750685 chr1:153750665 nonsynonymous SNV 0.985 4 1 hm5C_associated_SNPs_3123 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 29bp
chr1 153750682 153750682 1 + G A rs146128753 153750663 + 153750643 153750683 41 GCAGAACGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGG GCAGAACGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCAG < 41bp 1 0.512947555990462 1 0.424872815608978 experiment 0.974104888019077 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750663 chr1:153750682 nonsynonymous SNV 0.999 4 40 hm5C_associated_SNPs_3124 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 46bp
chr1 153750682 153750682 1 + G A rs146128753 153750667 + 153750647 153750687 41 AACGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGGGCTG AACGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCAGGCTG < 41bp 1 0.354689670781886 1 0.155017614364624 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750667 chr1:153750682 nonsynonymous SNV 0.999 4 36 hm5C_associated_SNPs_3125 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 46bp
chr1 153750682 153750682 1 + G A rs146128753 153750688 + 153750668 153750708 41 TGGCAGTGGGCAGCGGGCTGCGCCCAGATACCTGGGAGCGT TGGCAGTGGGCAGCAGGCTGCGCCCAGATACCTGGGAGCGT < 41bp 1 0.428344016102439 1 0.160579681396484 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750688 chr1:153750682 nonsynonymous SNV 0.999 4 15 hm5C_associated_SNPs_3126 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 46bp
chr1 153750706 153750706 1 + C T rs375994470 153750688 + 153750668 153750708 41 TGGCAGTGGGCAGCGGGCTGCGCCCAGATACCTGGGAGCGT TGGCAGTGGGCAGCGGGCTGCGCCCAGATACCTGGGAGTGT < 41bp 1 0.383703762204572 1 0.153698623180389 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750688 chr1:153750706 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_3127 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 70bp
chr1 153946189 153946189 1 + G A rs41265209 153946169 + 153946149 153946189 41 GAGTCGACCAGAAGCTGGGTCTGAGGATTACCAGCCTCACG GAGTCGACCAGAAGCTGGGTCTGAGGATTACCAGCCTCACA < 41bp 1 0.567252571203413 1 0.0929358899593353 experiment 0.865494857593174 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CREB3L4 ENSG00000143578 CDS Human protein_coding chr1:153946169 chr1:153946189 nonsynonymous SNV 0.918 2 41 hm5C_associated_SNPs_3128 0 0 0 0 2 CREB3L4 chr1:153946096 3'AG 153946096 Downstream 94bp
chr1 153946189 153946189 1 + G A rs41265209 153946169 + 153946149 153946189 41 GAGTCGACCAGAAGCTGGGTCTGAGGATTACCAGCCTCACG GAGTCGACCAGAAGCTGGGTCTGAGGATTACCAGCCTCACA < 41bp 1 0.567252571203413 1 0.0929358899593353 experiment 0.865494857593174 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CREB3L4 ENSG00000143578 CDS Human protein_coding chr1:153946169 chr1:153946189 nonsynonymous SNV 0.918 2 41 hm5C_associated_SNPs_3128 0 0 0 0 2 CREB3L4 chr1:153946192 5'GT 153946192 Upstream 4bp
chr1 154303934 154303934 1 + C T rs139970814 154303952 + 154303932 154303972 41 AGCGATAACCAGGTGAATAACCGCCAGTCTCAGGTGCTGAT AGTGATAACCAGGTGAATAACCGCCAGTCTCAGGTGCTGAT < 41bp 1 0.185155347454673 1 0.0452964305877686 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154303952 chr1:154303934 synonymous SNV . 0 3 hm5C_associated_SNPs_3134 0 0 1 0 2 ATP8B2 chr1:154303920 3'AG 154303920 Downstream 15bp
chr1 154303934 154303934 1 + C T rs139970814 154303952 + 154303932 154303972 41 AGCGATAACCAGGTGAATAACCGCCAGTCTCAGGTGCTGAT AGTGATAACCAGGTGAATAACCGCCAGTCTCAGGTGCTGAT < 41bp 1 0.185155347454673 1 0.0452964305877686 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154303952 chr1:154303934 synonymous SNV . 0 3 hm5C_associated_SNPs_3134 0 0 1 0 2 ATP8B2 chr1:154303981 5'GT 154303981 Upstream 48bp
chr1 154317153 154317153 1 + C T rs1194587 154317162 + 154317142 154317182 41 TCATCCCGCTCCGTAGGCAACGGCTTCACCTATCAGGACAA TCATCCCGCTCTGTAGGCAACGGCTTCACCTATCAGGACAA < 41bp 1 0.307349756505163 1 0.343982636928558 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154317162 chr1:154317153 synonymous SNV . 0 12 hm5C_associated_SNPs_3135 0 0 1 0 1 ATP8B2 chr1:154317117 3'AG 154317117 Downstream 37bp
chr1 154947213 154947213 1 + C T rs138322198 154947230 + 154947210 154947250 41 AACCGAGCGATCATGTCGCACAAACAAATTTACTATTCGGA AACTGAGCGATCATGTCGCACAAACAAATTTACTATTCGGA < 41bp 1 0.0837209330014537 1 0.122836500406265 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CKS1B ENSG00000173207 UTR5 Human protein_coding chr1:154947230 chr1:154947213 . . 0 4 hm5C_associated_SNPs_3136 0 0 1 0 1 CKS1B chr1:154947280 5'GT 154947280 Upstream 68bp
chr1 154975369 154975369 1 + C T rs538492632 154975363 + 154975343 154975383 41 CGGGCCTGGTGGGGGACGCGCTTCTTCCCACACTGTGAGCC CGGGCCTGGTGGGGGACGCGCTTCTTTCCACACTGTGAGCC < 41bp 1 0.405091993565085 1 0.21152937412262 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975363 chr1:154975369 . . 0 27 hm5C_associated_SNPs_3139 0 0 0 0 2 ZBTB7B chr1:154975319 3'AG 154975319 Downstream 51bp
chr1 154975369 154975369 1 + C T rs538492632 154975363 + 154975343 154975383 41 CGGGCCTGGTGGGGGACGCGCTTCTTCCCACACTGTGAGCC CGGGCCTGGTGGGGGACGCGCTTCTTTCCACACTGTGAGCC < 41bp 1 0.405091993565085 1 0.21152937412262 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975363 chr1:154975369 . . 0 27 hm5C_associated_SNPs_3139 0 0 0 0 2 ZBTB7B chr1:154975419 5'GT 154975419 Upstream 51bp
chr1 154975369 154975369 1 + C T rs538492632 154975366 + 154975346 154975386 41 GCCTGGTGGGGGACGCGCTTCTTCCCACACTGTGAGCCTCA GCCTGGTGGGGGACGCGCTTCTTTCCACACTGTGAGCCTCA < 41bp 1 0.0994272361108917 1 0.118092954158783 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975366 chr1:154975369 . . 0 24 hm5C_associated_SNPs_3140 0 0 0 0 2 ZBTB7B chr1:154975319 3'AG 154975319 Downstream 51bp
chr1 154975369 154975369 1 + C T rs538492632 154975366 + 154975346 154975386 41 GCCTGGTGGGGGACGCGCTTCTTCCCACACTGTGAGCCTCA GCCTGGTGGGGGACGCGCTTCTTTCCACACTGTGAGCCTCA < 41bp 1 0.0994272361108917 1 0.118092954158783 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975366 chr1:154975369 . . 0 24 hm5C_associated_SNPs_3140 0 0 0 0 2 ZBTB7B chr1:154975419 5'GT 154975419 Upstream 51bp
chr1 154975369 154975369 1 + C T rs538492632 154975370 + 154975350 154975390 41 GGTGGGGGACGCGCTTCTTCCCACACTGTGAGCCTCAGCAG GGTGGGGGACGCGCTTCTTTCCACACTGTGAGCCTCAGCAG < 41bp 1 0.73313512170018 1 0.427512049674988 experiment 0.53372975659964 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975370 chr1:154975369 . . 0 20 hm5C_associated_SNPs_3141 0 0 0 0 2 ZBTB7B chr1:154975319 3'AG 154975319 Downstream 51bp
chr1 154975369 154975369 1 + C T rs538492632 154975370 + 154975350 154975390 41 GGTGGGGGACGCGCTTCTTCCCACACTGTGAGCCTCAGCAG GGTGGGGGACGCGCTTCTTTCCACACTGTGAGCCTCAGCAG < 41bp 1 0.73313512170018 1 0.427512049674988 experiment 0.53372975659964 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975370 chr1:154975369 . . 0 20 hm5C_associated_SNPs_3141 0 0 0 0 2 ZBTB7B chr1:154975419 5'GT 154975419 Upstream 51bp
chr1 154975369 154975369 1 + C T rs538492632 154975371 + 154975351 154975391 41 GTGGGGGACGCGCTTCTTCCCACACTGTGAGCCTCAGCAGC GTGGGGGACGCGCTTCTTTCCACACTGTGAGCCTCAGCAGC < 41bp 1 0.536662978871433 1 0.404222726821899 experiment 0.926674042257135 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975371 chr1:154975369 . . 0 19 hm5C_associated_SNPs_3142 0 0 0 0 2 ZBTB7B chr1:154975319 3'AG 154975319 Downstream 51bp
chr1 154975369 154975369 1 + C T rs538492632 154975371 + 154975351 154975391 41 GTGGGGGACGCGCTTCTTCCCACACTGTGAGCCTCAGCAGC GTGGGGGACGCGCTTCTTTCCACACTGTGAGCCTCAGCAGC < 41bp 1 0.536662978871433 1 0.404222726821899 experiment 0.926674042257135 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975371 chr1:154975369 . . 0 19 hm5C_associated_SNPs_3142 0 0 0 0 2 ZBTB7B chr1:154975419 5'GT 154975419 Upstream 51bp
chr1 154975369 154975369 1 + C T rs538492632 154975373 + 154975353 154975393 41 GGGGGACGCGCTTCTTCCCACACTGTGAGCCTCAGCAGCTC GGGGGACGCGCTTCTTTCCACACTGTGAGCCTCAGCAGCTC < 41bp 1 0.647589847295496 1 0.108869999647141 experiment 0.704820305409007 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975373 chr1:154975369 . . 0 17 hm5C_associated_SNPs_3143 0 0 0 0 2 ZBTB7B chr1:154975319 3'AG 154975319 Downstream 51bp
chr1 154975369 154975369 1 + C T rs538492632 154975373 + 154975353 154975393 41 GGGGGACGCGCTTCTTCCCACACTGTGAGCCTCAGCAGCTC GGGGGACGCGCTTCTTTCCACACTGTGAGCCTCAGCAGCTC < 41bp 1 0.647589847295496 1 0.108869999647141 experiment 0.704820305409007 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975373 chr1:154975369 . . 0 17 hm5C_associated_SNPs_3143 0 0 0 0 2 ZBTB7B chr1:154975419 5'GT 154975419 Upstream 51bp
chr1 154975369 154975369 1 + C T rs538492632 154975375 + 154975355 154975395 41 GGGACGCGCTTCTTCCCACACTGTGAGCCTCAGCAGCTCCA GGGACGCGCTTCTTTCCACACTGTGAGCCTCAGCAGCTCCA < 41bp 1 0.568846862960284 1 0.0922629237174988 experiment 0.862306274079431 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975375 chr1:154975369 . . 0 15 hm5C_associated_SNPs_3144 0 0 0 0 2 ZBTB7B chr1:154975319 3'AG 154975319 Downstream 51bp
chr1 154975369 154975369 1 + C T rs538492632 154975375 + 154975355 154975395 41 GGGACGCGCTTCTTCCCACACTGTGAGCCTCAGCAGCTCCA GGGACGCGCTTCTTTCCACACTGTGAGCCTCAGCAGCTCCA < 41bp 1 0.568846862960284 1 0.0922629237174988 experiment 0.862306274079431 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975375 chr1:154975369 . . 0 15 hm5C_associated_SNPs_3144 0 0 0 0 2 ZBTB7B chr1:154975419 5'GT 154975419 Upstream 51bp
chr1 154975369 154975369 1 + C T rs538492632 154975382 + 154975362 154975402 41 GCTTCTTCCCACACTGTGAGCCTCAGCAGCTCCAGCCAGCG GCTTCTTTCCACACTGTGAGCCTCAGCAGCTCCAGCCAGCG < 41bp 1 0.246137179568811 1 0.0617737472057343 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975382 chr1:154975369 . . 0 8 hm5C_associated_SNPs_3145 0 0 0 0 2 ZBTB7B chr1:154975319 3'AG 154975319 Downstream 51bp
chr1 154975369 154975369 1 + C T rs538492632 154975382 + 154975362 154975402 41 GCTTCTTCCCACACTGTGAGCCTCAGCAGCTCCAGCCAGCG GCTTCTTTCCACACTGTGAGCCTCAGCAGCTCCAGCCAGCG < 41bp 1 0.246137179568811 1 0.0617737472057343 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975382 chr1:154975369 . . 0 8 hm5C_associated_SNPs_3145 0 0 0 0 2 ZBTB7B chr1:154975419 5'GT 154975419 Upstream 51bp
chr1 154975369 154975369 1 + C T rs538492632 154975383 + 154975363 154975403 41 CTTCTTCCCACACTGTGAGCCTCAGCAGCTCCAGCCAGCGG CTTCTTTCCACACTGTGAGCCTCAGCAGCTCCAGCCAGCGG < 41bp 1 0.314633018133558 1 0.233555942773819 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975383 chr1:154975369 . . 0 7 hm5C_associated_SNPs_3146 0 0 0 0 2 ZBTB7B chr1:154975319 3'AG 154975319 Downstream 51bp
chr1 154975369 154975369 1 + C T rs538492632 154975383 + 154975363 154975403 41 CTTCTTCCCACACTGTGAGCCTCAGCAGCTCCAGCCAGCGG CTTCTTTCCACACTGTGAGCCTCAGCAGCTCCAGCCAGCGG < 41bp 1 0.314633018133558 1 0.233555942773819 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975383 chr1:154975369 . . 0 7 hm5C_associated_SNPs_3146 0 0 0 0 2 ZBTB7B chr1:154975419 5'GT 154975419 Upstream 51bp
chr1 154975369 154975369 1 + C T rs538492632 154975385 + 154975365 154975405 41 TCTTCCCACACTGTGAGCCTCAGCAGCTCCAGCCAGCGGAC TCTTTCCACACTGTGAGCCTCAGCAGCTCCAGCCAGCGGAC < 41bp 1 0.76476422647496 1 0.162546247243881 experiment 0.47047154705008 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975385 chr1:154975369 . . 0 5 hm5C_associated_SNPs_3147 0 0 0 0 2 ZBTB7B chr1:154975319 3'AG 154975319 Downstream 51bp
chr1 154975369 154975369 1 + C T rs538492632 154975385 + 154975365 154975405 41 TCTTCCCACACTGTGAGCCTCAGCAGCTCCAGCCAGCGGAC TCTTTCCACACTGTGAGCCTCAGCAGCTCCAGCCAGCGGAC < 41bp 1 0.76476422647496 1 0.162546247243881 experiment 0.47047154705008 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975385 chr1:154975369 . . 0 5 hm5C_associated_SNPs_3147 0 0 0 0 2 ZBTB7B chr1:154975419 5'GT 154975419 Upstream 51bp
chr1 154975369 154975369 1 + C T rs538492632 154975388 + 154975368 154975408 41 TCCCACACTGTGAGCCTCAGCAGCTCCAGCCAGCGGACCCG TTCCACACTGTGAGCCTCAGCAGCTCCAGCCAGCGGACCCG < 41bp 1 0.505364019743185 1 0.0698620975017548 experiment 0.989271960513629 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975388 chr1:154975369 . . 0 2 hm5C_associated_SNPs_3148 0 0 0 0 2 ZBTB7B chr1:154975319 3'AG 154975319 Downstream 51bp
chr1 154975369 154975369 1 + C T rs538492632 154975388 + 154975368 154975408 41 TCCCACACTGTGAGCCTCAGCAGCTCCAGCCAGCGGACCCG TTCCACACTGTGAGCCTCAGCAGCTCCAGCCAGCGGACCCG < 41bp 1 0.505364019743185 1 0.0698620975017548 experiment 0.989271960513629 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975388 chr1:154975369 . . 0 2 hm5C_associated_SNPs_3148 0 0 0 0 2 ZBTB7B chr1:154975419 5'GT 154975419 Upstream 51bp
chr1 155032752 155032752 1 + A G rs61751624 155032751 + 155032731 155032771 41 GTCCTGGTGATGCTTGGTGCCAGCTACTGGTACCGTGCCCG GTCCTGGTGATGCTTGGTGCCGGCTACTGGTACCGTGCCCG < 41bp 1 0.6231488131092 1 0.820893049240112 experiment 0.7537023737816 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155032751 chr1:155032752 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_3151 0 0 1 0 2 ADAM15 chr1:155032681 3'AG 155032681 Downstream 72bp
chr1 155032752 155032752 1 + A G rs61751624 155032751 + 155032731 155032771 41 GTCCTGGTGATGCTTGGTGCCAGCTACTGGTACCGTGCCCG GTCCTGGTGATGCTTGGTGCCGGCTACTGGTACCGTGCCCG < 41bp 1 0.6231488131092 1 0.820893049240112 experiment 0.7537023737816 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155032751 chr1:155032752 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_3151 0 0 1 0 2 ADAM15 chr1:155032819 5'GT 155032819 Upstream 68bp
chr1 155032771 155032771 1 + G A rs147260444 155032751 + 155032731 155032771 41 GTCCTGGTGATGCTTGGTGCCAGCTACTGGTACCGTGCCCG GTCCTGGTGATGCTTGGTGCCAGCTACTGGTACCGTGCCCA < 41bp 1 0.560183814694781 1 0.556206524372101 experiment 0.879632370610438 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155032751 chr1:155032771 nonsynonymous SNV 0.486 2 41 hm5C_associated_SNPs_3152 0 0 1 0 2 ADAM15 chr1:155032681 3'AG 155032681 Downstream 91bp
chr1 155032771 155032771 1 + G A rs147260444 155032751 + 155032731 155032771 41 GTCCTGGTGATGCTTGGTGCCAGCTACTGGTACCGTGCCCG GTCCTGGTGATGCTTGGTGCCAGCTACTGGTACCGTGCCCA < 41bp 1 0.560183814694781 1 0.556206524372101 experiment 0.879632370610438 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155032751 chr1:155032771 nonsynonymous SNV 0.486 2 41 hm5C_associated_SNPs_3152 0 0 1 0 2 ADAM15 chr1:155032819 5'GT 155032819 Upstream 49bp
chr1 155033918 155033918 1 + C T rs41264285 155033936 + 155033916 155033956 41 CCCCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG CCTCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG < 41bp 1 0.23739428246856 1 0.370964527130127 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155033936 chr1:155033918 nonsynonymous SNV 0.641 0 3 hm5C_associated_SNPs_3153 0 0 1 0 3 ADAM15 chr1:155033891 3'AG 155033891 Downstream 28bp
chr1 155033918 155033918 1 + C T rs41264285 155033936 + 155033916 155033956 41 CCCCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG CCTCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG < 41bp 1 0.23739428246856 1 0.370964527130127 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155033936 chr1:155033918 nonsynonymous SNV 0.641 0 3 hm5C_associated_SNPs_3153 0 0 1 0 3 ADAM15 chr1:155033894 3'AG 155033894 Downstream 25bp
chr1 155033918 155033918 1 + C T rs41264285 155033936 + 155033916 155033956 41 CCCCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG CCTCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG < 41bp 1 0.23739428246856 1 0.370964527130127 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155033936 chr1:155033918 nonsynonymous SNV 0.641 0 3 hm5C_associated_SNPs_3153 0 0 1 0 3 ADAM15 chr1:155033965 5'GT 155033965 Upstream 48bp
chr1 155033921 155033921 1 + C A rs199706846 155033936 + 155033916 155033956 41 CCCCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG CCCCCACTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG < 41bp 1 0.241873619907485 1 0.305950582027435 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155033936 chr1:155033921 nonsynonymous SNV 0.844 3 6 hm5C_associated_SNPs_3154 0 0 1 0 3 ADAM15 chr1:155033891 3'AG 155033891 Downstream 31bp
chr1 155033921 155033921 1 + C A rs199706846 155033936 + 155033916 155033956 41 CCCCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG CCCCCACTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG < 41bp 1 0.241873619907485 1 0.305950582027435 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155033936 chr1:155033921 nonsynonymous SNV 0.844 3 6 hm5C_associated_SNPs_3154 0 0 1 0 3 ADAM15 chr1:155033894 3'AG 155033894 Downstream 28bp
chr1 155033921 155033921 1 + C A rs199706846 155033936 + 155033916 155033956 41 CCCCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG CCCCCACTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG < 41bp 1 0.241873619907485 1 0.305950582027435 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155033936 chr1:155033921 nonsynonymous SNV 0.844 3 6 hm5C_associated_SNPs_3154 0 0 1 0 3 ADAM15 chr1:155033965 5'GT 155033965 Upstream 45bp
chr1 155033938 155033938 1 + G A rs199883535 155033936 + 155033916 155033956 41 CCCCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG CCCCCCCTTCCAGGCCGCTGCCACCTGACCCTGTGTCCAAG < 41bp 1 0.142248822078377 1 0.145904302597046 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155033936 chr1:155033938 nonsynonymous SNV 0.895 0 23 hm5C_associated_SNPs_3155 0 0 1 0 3 ADAM15 chr1:155033891 3'AG 155033891 Downstream 48bp
chr1 155033938 155033938 1 + G A rs199883535 155033936 + 155033916 155033956 41 CCCCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG CCCCCCCTTCCAGGCCGCTGCCACCTGACCCTGTGTCCAAG < 41bp 1 0.142248822078377 1 0.145904302597046 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155033936 chr1:155033938 nonsynonymous SNV 0.895 0 23 hm5C_associated_SNPs_3155 0 0 1 0 3 ADAM15 chr1:155033894 3'AG 155033894 Downstream 45bp
chr1 155033938 155033938 1 + G A rs199883535 155033936 + 155033916 155033956 41 CCCCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG CCCCCCCTTCCAGGCCGCTGCCACCTGACCCTGTGTCCAAG < 41bp 1 0.142248822078377 1 0.145904302597046 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155033936 chr1:155033938 nonsynonymous SNV 0.895 0 23 hm5C_associated_SNPs_3155 0 0 1 0 3 ADAM15 chr1:155033965 5'GT 155033965 Upstream 28bp
chr1 155106016 155106016 1 + G A rs6699434 155106004 + 155105984 155106024 41 CCCATCCACCAGCATGAAGACCGCTGCTTGAGGTTGAAGGT CCCATCCACCAGCATGAAGACCGCTGCTTGAGATTGAAGGT < 41bp 1 0.178426316883396 1 0.154070109128952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNA1 ENSG00000169242 CDS Human protein_coding chr1:155106004 chr1:155106016 synonymous SNV . 0 33 hm5C_associated_SNPs_3156 0 0 1 0 2 EFNA1 chr1:155105979 3'AG 155105979 Downstream 38bp
chr1 155106016 155106016 1 + G A rs6699434 155106004 + 155105984 155106024 41 CCCATCCACCAGCATGAAGACCGCTGCTTGAGGTTGAAGGT CCCATCCACCAGCATGAAGACCGCTGCTTGAGATTGAAGGT < 41bp 1 0.178426316883396 1 0.154070109128952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNA1 ENSG00000169242 CDS Human protein_coding chr1:155106004 chr1:155106016 synonymous SNV . 0 33 hm5C_associated_SNPs_3156 0 0 1 0 2 EFNA1 chr1:155106044 5'GT 155106044 Upstream 29bp
chr1 155255659 155255659 1 + G A rs114620093 155255657 + 155255637 155255677 41 TCTCGTGGTGCGTGAGGGCTCCGTGGGGAGGAAGATGTACT TCTCGTGGTGCGTGAGGGCTCCATGGGGAGGAAGATGTACT < 41bp 1 0.213907044900866 1 0.295972943305969 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HCN3 ENSG00000143630 CDS Human protein_coding chr1:155255657 chr1:155255659 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_3157 0 0 0 0 1 HCN3 chr1:155255755 5'GT 155255755 Upstream 97bp
chr1 155583296 155583296 1 + T C rs112258960 155583316 + 155583296 155583336 41 TGTACCACTGGGGAAGAAATCTTGGCTCAGTATTTACAACA CGTACCACTGGGGAAGAAATCTTGGCTCAGTATTTACAACA < 41bp 1 0.680086465603529 1 0.486132115125656 experiment 0.639827068792941 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MSTO1 ENSG00000125459 CDS Human unprocessed_pseudogene chr1:155583316 chr1:155583296 nonsynonymous SNV 0.004 3 1 hm5C_associated_SNPs_3159 0 0 0 0 3 MSTO1 chr1:155583216 3'AG 155583216 Downstream 81bp
chr1 155583296 155583296 1 + T C rs112258960 155583316 + 155583296 155583336 41 TGTACCACTGGGGAAGAAATCTTGGCTCAGTATTTACAACA CGTACCACTGGGGAAGAAATCTTGGCTCAGTATTTACAACA < 41bp 1 0.680086465603529 1 0.486132115125656 experiment 0.639827068792941 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155583316 chr1:155583296 nonsynonymous SNV 0.004 3 1 hm5C_associated_SNPs_3159 0 0 0 0 3 MSTO1 chr1:155583253 3'AG 155583253 Downstream 44bp
chr1 155583296 155583296 1 + T C rs112258960 155583316 + 155583296 155583336 41 TGTACCACTGGGGAAGAAATCTTGGCTCAGTATTTACAACA CGTACCACTGGGGAAGAAATCTTGGCTCAGTATTTACAACA < 41bp 1 0.680086465603529 1 0.486132115125656 experiment 0.639827068792941 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155583316 chr1:155583296 nonsynonymous SNV 0.004 3 1 hm5C_associated_SNPs_3159 0 0 0 0 3 MSTO1 chr1:155583357 5'GT 155583357 Upstream 62bp
chr1 155717110 155717110 1 + G A rs568945103 155717127 + 155717107 155717147 41 ACAGAGGCCAGCATCAGGGTCTGGTCAGACTTCCTCAGAGT ACAAAGGCCAGCATCAGGGTCTGGTCAGACTTCCTCAGAGT < 41bp 1 0.394603913487141 1 0.10405445098877 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MSTO2P ENSG00000203761 ncRNA_exonic Human unprocessed_pseudogene chr1:155717127 chr1:155717110 . . 0 4 hm5C_associated_SNPs_3160 0 0 0 0 2 MSTO2P chr1:155717060 3'AG 155717060 Downstream 51bp
chr1 155717110 155717110 1 + G A rs568945103 155717127 + 155717107 155717147 41 ACAGAGGCCAGCATCAGGGTCTGGTCAGACTTCCTCAGAGT ACAAAGGCCAGCATCAGGGTCTGGTCAGACTTCCTCAGAGT < 41bp 1 0.394603913487141 1 0.10405445098877 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MSTO2P ENSG00000203761 ncRNA_exonic Human unprocessed_pseudogene chr1:155717127 chr1:155717110 . . 0 4 hm5C_associated_SNPs_3160 0 0 0 0 2 MSTO2P chr1:155717198 5'GT 155717198 Upstream 89bp
chr1 156096691 156096691 1 + A G rs148559653 156096700 + 156096680 156096720 41 GACACGGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGG GACACGGGCGAGGCCAGGGTCTCCCCTGTGAGCACTAGAGG < 41bp 1 0.237345220829446 1 0.499133080244064 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096700 chr1:156096691 nonsynonymous SNV 0.125 1 12 hm5C_associated_SNPs_3163 0 0 0 0 1 LMNA chr1:156096706 5'GT 156096706 Upstream 16bp
chr1 156096691 156096691 1 + A G rs148559653 156096703 + 156096683 156096723 41 ACGGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATT ACGGGCGAGGCCAGGGTCTCCCCTGTGAGCACTAGAGGATT < 41bp 1 0.143165366356821 1 0.110799074172974 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096703 chr1:156096691 nonsynonymous SNV 0.125 1 9 hm5C_associated_SNPs_3164 0 0 0 0 1 LMNA chr1:156096706 5'GT 156096706 Upstream 16bp
chr1 156096691 156096691 1 + A G rs148559653 156096704 + 156096684 156096724 41 CGGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTT CGGGCGAGGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTT < 41bp 1 0.207638449433598 1 0.106331944465637 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096704 chr1:156096691 nonsynonymous SNV 0.125 1 8 hm5C_associated_SNPs_3165 0 0 0 0 1 LMNA chr1:156096706 5'GT 156096706 Upstream 16bp
chr1 156096691 156096691 1 + A G rs148559653 156096705 + 156096685 156096725 41 GGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTTC GGGCGAGGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTTC < 41bp 1 0.366605853394152 1 0.133199691772461 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096705 chr1:156096691 nonsynonymous SNV 0.125 1 7 hm5C_associated_SNPs_3166 0 0 0 0 1 LMNA chr1:156096706 5'GT 156096706 Upstream 16bp
chr1 156202173 156202173 1 + A C rs1052053 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGCGATGACACAGCCAATCTATGACAAGTTTATA < 41bp 1 0.0356001774427484 1 0.14225235581398 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202173 nonsynonymous SNV 0.812 0 22 hm5C_associated_SNPs_3167 0 1 0 3 2 PMF1;PMF1-BGLAP chr1:156202111 3'AG 156202111 Downstream 63bp
chr1 156202173 156202173 1 + A C rs1052053 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGCGATGACACAGCCAATCTATGACAAGTTTATA < 41bp 1 0.0356001774427484 1 0.14225235581398 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202173 nonsynonymous SNV 0.812 0 22 hm5C_associated_SNPs_3167 0 1 0 3 2 PMF1;PMF1-BGLAP chr1:156202216 5'GT 156202216 Upstream 44bp
chr1 156351613 156351613 1 + C G rs201484566 156351618 + 156351598 156351638 41 TCCACATCCAAAATGCAGCGCTGGCTGGAGGGGTTGTGGTG TCCACATCCAAAATGGAGCGCTGGCTGGAGGGGTTGTGGTG < 41bp 1 0.401611669776158 1 0.154886066913605 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHBG ENSG00000132677 CDS Human protein_coding chr1:156351618 chr1:156351613 nonsynonymous SNV 0.945 3 16 hm5C_associated_SNPs_3168 0 0 0 0 1 RHBG chr1:156351597 3'AG 156351597 Downstream 17bp
chr1 156761543 156761543 1 + C A rs35929266 156761563 + 156761543 156761583 41 CAGGAAATTGCCCCAGATGCCTCCTTCATCGATGACGAAGC AAGGAAATTGCCCCAGATGCCTCCTTCATCGATGACGAAGC < 41bp 1 0.513725059176556 1 0.478168904781342 experiment 0.972549881646888 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156761563 chr1:156761543 nonsynonymous SNV 0.986 1 1 hm5C_associated_SNPs_3174 0 0 1 0 2 PRCC chr1:156761489 3'AG 156761489 Downstream 55bp
chr1 156761543 156761543 1 + C A rs35929266 156761563 + 156761543 156761583 41 CAGGAAATTGCCCCAGATGCCTCCTTCATCGATGACGAAGC AAGGAAATTGCCCCAGATGCCTCCTTCATCGATGACGAAGC < 41bp 1 0.513725059176556 1 0.478168904781342 experiment 0.972549881646888 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156761563 chr1:156761543 nonsynonymous SNV 0.986 1 1 hm5C_associated_SNPs_3174 0 0 1 0 2 PRCC chr1:156761584 5'GT 156761584 Upstream 42bp
chr1 156883194 156883194 1 + G A rs141857901 156883191 + 156883171 156883211 41 GTCCCCTCTTAGGTTCCAGGCCCGCTCTTTGCCAGCCTGCA GTCCCCTCTTAGGTTCCAGGCCCACTCTTTGCCAGCCTGCA < 41bp 1 0.038804564550302 1 0.0156864821910858 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156883191 chr1:156883194 synonymous SNV . 0 24 hm5C_associated_SNPs_3175 0 0 0 0 1 PEAR1 chr1:156883183 3'AG 156883183 Downstream 12bp
chr1 160178356 160178356 1 + A G rs667306 160178351 + 160178331 160178371 41 AGCCCAGAGAGCAGATTTCTCCACGAGCCCTAAGGAAATCT AGCCCAGAGAGCAGATTTCTCCACGGGCCCTAAGGAAATCT < 41bp 1 0.340753051980612 1 0.358995199203491 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC729867 ENSG00000227741 ncRNA_intronic Human protein_coding chr1:160178351 chr1:160178356 . . 0 26 hm5C_associated_SNPs_3177 0 0 0 0 1 PEA15 chr1:160178455 5'GT 160178455 Upstream 100bp
chr1 160323977 160323977 1 + A C rs143039637 160323975 + 160323955 160323995 41 TGCTGTCATCCTCAGGAGGCCAAATCAGTCCCAGCCTCTCC TGCTGTCATCCTCAGGAGGCCACATCAGTCCCAGCCTCTCC < 41bp 1 0.328259409414053 1 0.110940903425217 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCSTN ENSG00000162736 CDS Human protein_coding chr1:160323975 chr1:160323977 nonsynonymous SNV 0.052 1 23 hm5C_associated_SNPs_3178 0 0 1 0 1 NCSTN chr1:160323908 3'AG 160323908 Downstream 70bp
chr1 161088000 161088000 1 + G A rs76502631 161088011 + 161087991 161088031 41 TCGGCCGCGGTGAATCCCACCTGCGGTGCTTTAACTTGTGT TCGGCCGCGATGAATCCCACCTGCGGTGCTTTAACTTGTGT < 41bp 1 0.288399316149599 1 0.269098818302155 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NIT1 ENSG00000158793 UTR5 Human protein_coding chr1:161088011 chr1:161088000 . . 0 10 hm5C_associated_SNPs_3179 0 0 1 0 1 NIT1 chr1:161088015 5'GT 161088015 Upstream 16bp
chr1 161137807 161137807 1 + C A rs532136485 161137819 + 161137799 161137839 41 CTTCACCCCCCTTCTCCAAACCTCTGTTTTGGGCTGGGCTG CTTCACCCACCTTCTCCAAACCTCTGTTTTGGGCTGGGCTG < 41bp 1 0.0664032202148575 1 0.0614587068557739 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPOX ENSG00000143224 CDS Human protein_coding chr1:161137819 chr1:161137807 nonsynonymous SNV 0.964 5 9 hm5C_associated_SNPs_3180 0 0 1 0 1 PPOX chr1:161137785 3'AG 161137785 Downstream 23bp
chr1 161137807 161137807 1 + C A rs532136485 161137822 + 161137802 161137842 41 CACCCCCCTTCTCCAAACCTCTGTTTTGGGCTGGGCTGAGG CACCCACCTTCTCCAAACCTCTGTTTTGGGCTGGGCTGAGG < 41bp 1 0.20289270786887 1 0.087911456823349 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPOX ENSG00000143224 CDS Human protein_coding chr1:161137822 chr1:161137807 nonsynonymous SNV 0.964 5 6 hm5C_associated_SNPs_3181 0 0 1 0 1 PPOX chr1:161137785 3'AG 161137785 Downstream 23bp
chr1 161696748 161696748 1 + G A rs578183317 161696753 + 161696733 161696773 41 CCACCCGCAGTGTCCGGAAACGCAGTCCGTGGCTGCAGCTC CCACCCGCAGTGTCCAGAAACGCAGTCCGTGGCTGCAGCTC < 41bp 1 0.741295296391985 1 0.193672746419907 experiment 0.51740940721603 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCRLB ENSG00000162746 CDS Human protein_coding chr1:161696753 chr1:161696748 nonsynonymous SNV 0.934 1 16 hm5C_associated_SNPs_3228 0 0 0 0 1 FCRLB chr1:161696783 5'GT 161696783 Upstream 36bp
chr1 161753841 161753841 1 + G A rs2271012 161753845 + 161753825 161753865 41 CAAGTTATTCAGTCTCGTCTCCTCGGTCAGTGGACTCTTAT CAAGTTATTCAGTCTCATCTCCTCGGTCAGTGGACTCTTAT < 41bp 1 0.222786115557703 1 0.23856520652771 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161753845 chr1:161753841 synonymous SNV . 0 17 hm5C_associated_SNPs_3229 0 0 1 0 2 ATF6 chr1:161753780 3'AG 161753780 Downstream 62bp
chr1 161753841 161753841 1 + G A rs2271012 161753845 + 161753825 161753865 41 CAAGTTATTCAGTCTCGTCTCCTCGGTCAGTGGACTCTTAT CAAGTTATTCAGTCTCATCTCCTCGGTCAGTGGACTCTTAT < 41bp 1 0.222786115557703 1 0.23856520652771 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161753845 chr1:161753841 synonymous SNV . 0 17 hm5C_associated_SNPs_3229 0 0 1 0 2 ATF6 chr1:161753886 5'GT 161753886 Upstream 46bp
chr1 162725036 162725036 1 + A T rs201573606 162725020 + 162725000 162725040 41 CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCTCCGA < 41bp 1 0.456970704610126 1 0.655401766300201 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162725020 chr1:162725036 nonsynonymous SNV 0.998 1 37 hm5C_associated_SNPs_3234 0 0 0 0 2 DDR2 chr1:162724946 3'AG 162724946 Downstream 91bp
chr1 162725036 162725036 1 + A T rs201573606 162725020 + 162725000 162725040 41 CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCTCCGA < 41bp 1 0.456970704610126 1 0.655401766300201 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162725020 chr1:162725036 nonsynonymous SNV 0.998 1 37 hm5C_associated_SNPs_3234 0 0 0 0 2 DDR2 chr1:162725093 5'GT 162725093 Upstream 58bp
chr1 162725038 162725038 1 + C T rs56313008 162725020 + 162725000 162725040 41 CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACTGA < 41bp 1 0.42528842677982 1 0.767156004905701 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162725020 chr1:162725038 synonymous SNV . 0 39 hm5C_associated_SNPs_3235 1 0 0 0 2 DDR2 chr1:162724946 3'AG 162724946 Downstream 93bp
chr1 162725038 162725038 1 + C T rs56313008 162725020 + 162725000 162725040 41 CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACTGA < 41bp 1 0.42528842677982 1 0.767156004905701 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162725020 chr1:162725038 synonymous SNV . 0 39 hm5C_associated_SNPs_3235 1 0 0 0 2 DDR2 chr1:162725093 5'GT 162725093 Upstream 56bp
chr1 165600520 165600520 1 + A G rs536111350 165600527 + 165600507 165600547 41 TCCAGCTGTTCGAAGGTGATCCAGGTGAGTGCTAGCACCTG TCCAGCTGTTCGAGGGTGATCCAGGTGAGTGCTAGCACCTG < 41bp 1 0.733578822911471 1 0.851815104484558 experiment 0.532842354177057 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MGST3 ENSG00000143198 UTR5 Human protein_coding chr1:165600527 chr1:165600520 . . 0 14 hm5C_associated_SNPs_3237 0 0 1 0 1 MGST3 chr1:165600530 5'GT 165600530 Upstream 11bp
chr1 167691434 167691434 1 + A C rs562954825 167691414 + 167691394 167691434 41 AGCGTCCGCCGGAGCCGGGGCGGTGATTGCAGCCCCAGACA AGCGTCCGCCGGAGCCGGGGCGGTGATTGCAGCCCCAGACC < 41bp 1 0.779049765747938 1 0.400341749191284 experiment 0.441900468504124 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MPZL1 ENSG00000197965 CDS Human protein_coding chr1:167691414 chr1:167691434 nonsynonymous SNV 0.052 0 41 hm5C_associated_SNPs_3244 0 0 1 0 1 MPZL1 chr1:167691479 5'GT 167691479 Upstream 46bp
chr1 167691434 167691434 1 + A C rs562954825 167691426 + 167691406 167691446 41 AGCCGGGGCGGTGATTGCAGCCCCAGACAGCCGGCGCTGGC AGCCGGGGCGGTGATTGCAGCCCCAGACCGCCGGCGCTGGC < 41bp 1 0.788944469592533 1 0.709418058395386 experiment 0.422111060814934 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MPZL1 ENSG00000197965 CDS Human protein_coding chr1:167691426 chr1:167691434 nonsynonymous SNV 0.052 0 29 hm5C_associated_SNPs_3245 0 0 1 0 1 MPZL1 chr1:167691479 5'GT 167691479 Upstream 46bp
chr1 168014204 168014204 1 + T A rs41271647 168014224 + 168014204 168014244 41 TTGATCGCTCTTGTGGGGTTCCAGAAGAATCTGCTTCATCT ATGATCGCTCTTGTGGGGTTCCAGAAGAATCTGCTTCATCT < 41bp 1 0.424060306510313 1 0.523734390735626 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DCAF6 ENSG00000143164 CDS Human protein_coding chr1:168014224 chr1:168014204 nonsynonymous SNV 0.025 0 1 hm5C_associated_SNPs_3247 0 0 1 0 1 DCAF6 chr1:168014138 3'AG 168014138 Downstream 67bp
chr1 171527223 171527223 1 + C G rs556975367 171527220 + 171527200 171527240 41 ACAGTCACATGGCACTCTGACAGCTGAATTATGGGATAACA ACAGTCACATGGCACTCTGACAGGTGAATTATGGGATAACA < 41bp 1 0.455627359412151 1 0.755457282066345 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171527220 chr1:171527223 nonsynonymous SNV 0.993 0 24 hm5C_associated_SNPs_3248 0 0 1 0 1 PRRC2C chr1:171527282 5'GT 171527282 Upstream 60bp
chr1 171763627 171763627 1 + A G rs61733150 171763629 + 171763609 171763649 41 CCCAGCATTTGTGGAGCAATCTTTTCTACAGAAGGTTAAAA CCCAGCATTTGTGGAGCAGTCTTTTCTACAGAAGGTTAAAA < 41bp 1 0.123421760829538 1 0.0714583992958069 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171763629 chr1:171763627 synonymous SNV . 0 19 hm5C_associated_SNPs_3250 0 0 1 0 2 METTL13 chr1:171763536 3'AG 171763536 Downstream 92bp
chr1 171763627 171763627 1 + A G rs61733150 171763629 + 171763609 171763649 41 CCCAGCATTTGTGGAGCAATCTTTTCTACAGAAGGTTAAAA CCCAGCATTTGTGGAGCAGTCTTTTCTACAGAAGGTTAAAA < 41bp 1 0.123421760829538 1 0.0714583992958069 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171763629 chr1:171763627 synonymous SNV . 0 19 hm5C_associated_SNPs_3250 0 0 1 0 2 METTL13 chr1:171763667 5'GT 171763667 Upstream 41bp
chr1 174968807 174968807 1 + A T rs11548913 174968824 + 174968804 174968844 41 CCGACTTGGACTCCGAAGATCGGTACGTTATTTCCGGGGCT CCGTCTTGGACTCCGAAGATCGGTACGTTATTTCCGGGGCT < 41bp 1 0.648705225137372 1 0.71564382314682 experiment 0.702589549725256 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CACYBP ENSG00000116161 UTR5 Human protein_coding chr1:174968824 chr1:174968807 . . 0 4 hm5C_associated_SNPs_3252 0 0 0 0 1 CACYBP chr1:174968825 5'GT 174968825 Upstream 19bp
chr1 179876988 179876988 1 + C A rs609521 179876984 + 179876964 179877004 41 ACTTCACAGCTCATGATAAGCAACCTTCAGTGCTAAGTAAG ACTTCACAGCTCATGATAAGCAACATTCAGTGCTAAGTAAG < 41bp 1 0.711014746119395 1 0.749275803565979 experiment 0.577970507761211 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TOR1AIP1 ENSG00000143337 CDS Human protein_coding chr1:179876984 chr1:179876988 nonsynonymous SNV 0.011 1 25 hm5C_associated_SNPs_3267 0 0 1 0 2 TOR1AIP1 chr1:179876958 3'AG 179876958 Downstream 31bp
chr1 179876988 179876988 1 + C A rs609521 179876984 + 179876964 179877004 41 ACTTCACAGCTCATGATAAGCAACCTTCAGTGCTAAGTAAG ACTTCACAGCTCATGATAAGCAACATTCAGTGCTAAGTAAG < 41bp 1 0.711014746119395 1 0.749275803565979 experiment 0.577970507761211 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TOR1AIP1 ENSG00000143337 CDS Human protein_coding chr1:179876984 chr1:179876988 nonsynonymous SNV 0.011 1 25 hm5C_associated_SNPs_3267 0 0 1 0 2 TOR1AIP1 chr1:179876999 5'GT 179876999 Upstream 12bp
chr1 180049723 180049723 1 + A T rs149251843 180049727 + 180049707 180049747 41 ATAGGACTGGAGGACAATGTCACCTGCCTATCAAGTCCCAT ATAGGACTGGAGGACATTGTCACCTGCCTATCAAGTCCCAT < 41bp 1 0.457992173802584 1 0.247633516788483 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180049727 chr1:180049723 nonsynonymous SNV 0.285 0 17 hm5C_associated_SNPs_3268 0 0 1 0 2 CEP350 chr1:180049652 3'AG 180049652 Downstream 72bp
chr1 180049723 180049723 1 + A T rs149251843 180049727 + 180049707 180049747 41 ATAGGACTGGAGGACAATGTCACCTGCCTATCAAGTCCCAT ATAGGACTGGAGGACATTGTCACCTGCCTATCAAGTCCCAT < 41bp 1 0.457992173802584 1 0.247633516788483 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180049727 chr1:180049723 nonsynonymous SNV 0.285 0 17 hm5C_associated_SNPs_3268 0 0 1 0 2 CEP350 chr1:180049796 5'GT 180049796 Upstream 74bp
chr1 180794046 180794046 1 + G A rs151270778 180794028 + 180794008 180794048 41 GCTGGAGTAAACCATGTACTCATCTTTGAACTTAATCCGAG GCTGGAGTAAACCATGTACTCATCTTTGAACTTAATCCAAG < 41bp 1 0.347577722000544 1 0.481764554977417 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control XPR1 ENSG00000143324 CDS Human protein_coding chr1:180794028 chr1:180794046 synonymous SNV . 0 39 hm5C_associated_SNPs_3274 0 0 1 0 1 XPR1 chr1:180794079 5'GT 180794079 Upstream 34bp
chr1 183083724 183083724 1 + C T rs201041731 183083740 + 183083720 183083760 41 GTTCCACTGGCCATGGGGGCCACTGTACCAACTGCCAGGAT GTTCTACTGGCCATGGGGGCCACTGTACCAACTGCCAGGAT < 41bp 1 0.264125711921677 1 0.124532371759415 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183083740 chr1:183083724 synonymous SNV . 0 5 hm5C_associated_SNPs_3284 0 0 1 0 1 LAMC1 chr1:183083666 3'AG 183083666 Downstream 59bp
chr1 183086460 183086460 1 + G A rs557108773 183086473 + 183086453 183086493 41 AGATGAGGATGGGTGGCGTGCGGAACAGAGAGATGGCTCTG AGATGAGAATGGGTGGCGTGCGGAACAGAGAGATGGCTCTG < 41bp 1 0.721117921894575 1 0.848409414291382 experiment 0.55776415621085 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183086473 chr1:183086460 nonsynonymous SNV 0.999 2 8 hm5C_associated_SNPs_3285 0 0 1 0 1 LAMC1 chr1:183086455 3'AG 183086455 Downstream 6bp
chr1 183086486 183086486 1 + T G rs61752348 183086473 + 183086453 183086493 41 AGATGAGGATGGGTGGCGTGCGGAACAGAGAGATGGCTCTG AGATGAGGATGGGTGGCGTGCGGAACAGAGAGAGGGCTCTG < 41bp 1 0.745222893483494 1 0.886111617088318 experiment 0.509554213033012 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183086473 chr1:183086486 nonsynonymous SNV 0.985 1 34 hm5C_associated_SNPs_3286 0 0 1 0 2 LAMC1 chr1:183086455 3'AG 183086455 Downstream 32bp
chr1 183086486 183086486 1 + T G rs61752348 183086473 + 183086453 183086493 41 AGATGAGGATGGGTGGCGTGCGGAACAGAGAGATGGCTCTG AGATGAGGATGGGTGGCGTGCGGAACAGAGAGAGGGCTCTG < 41bp 1 0.745222893483494 1 0.886111617088318 experiment 0.509554213033012 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183086473 chr1:183086486 nonsynonymous SNV 0.985 1 34 hm5C_associated_SNPs_3286 0 0 1 0 2 LAMC1 chr1:183086577 5'GT 183086577 Upstream 92bp
chr1 183086559 183086559 1 + C G rs150392886 183086575 + 183086555 183086595 41 TCCTCGGTACTTCATTGCTCCTGGTAAGTAAGGCTAGAAAG TCCTGGGTACTTCATTGCTCCTGGTAAGTAAGGCTAGAAAG < 41bp 1 0.368674174186047 1 0.140183627605438 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183086575 chr1:183086559 nonsynonymous SNV 0.991 2 5 hm5C_associated_SNPs_3287 0 0 1 0 1 LAMC1 chr1:183086577 5'GT 183086577 Upstream 19bp
chr1 183101625 183101625 1 + G A rs12095652 183101623 + 183101603 183101643 41 ACAACCTGCTTCTGAGGACACTGGCAGGAGAAAATCAAACA ACAACCTGCTTCTGAGGACACTAGCAGGAGAAAATCAAACA < 41bp 1 0.191336958026183 1 0.198517382144928 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183101623 chr1:183101625 synonymous SNV . 0 23 hm5C_associated_SNPs_3288 0 0 1 0 2 LAMC1 chr1:183101535 3'AG 183101535 Downstream 91bp
chr1 183101625 183101625 1 + G A rs12095652 183101623 + 183101603 183101643 41 ACAACCTGCTTCTGAGGACACTGGCAGGAGAAAATCAAACA ACAACCTGCTTCTGAGGACACTAGCAGGAGAAAATCAAACA < 41bp 1 0.191336958026183 1 0.198517382144928 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183101623 chr1:183101625 synonymous SNV . 0 23 hm5C_associated_SNPs_3288 0 0 1 0 2 LAMC1 chr1:183101672 5'GT 183101672 Upstream 48bp
chr1 183101625 183101625 1 + G A rs12095652 183101642 + 183101622 183101662 41 ACTGGCAGGAGAAAATCAAACAGCATTTGAGATTGAAGAGC ACTAGCAGGAGAAAATCAAACAGCATTTGAGATTGAAGAGC < 41bp 1 0.702387727785917 1 0.580332458019257 experiment 0.595224544428167 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183101642 chr1:183101625 synonymous SNV . 0 4 hm5C_associated_SNPs_3289 0 0 1 0 2 LAMC1 chr1:183101535 3'AG 183101535 Downstream 91bp
chr1 183101625 183101625 1 + G A rs12095652 183101642 + 183101622 183101662 41 ACTGGCAGGAGAAAATCAAACAGCATTTGAGATTGAAGAGC ACTAGCAGGAGAAAATCAAACAGCATTTGAGATTGAAGAGC < 41bp 1 0.702387727785917 1 0.580332458019257 experiment 0.595224544428167 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183101642 chr1:183101625 synonymous SNV . 0 4 hm5C_associated_SNPs_3289 0 0 1 0 2 LAMC1 chr1:183101672 5'GT 183101672 Upstream 48bp
chr1 183101625 183101625 1 + G A rs12095652 183101645 + 183101625 183101665 41 GGCAGGAGAAAATCAAACAGCATTTGAGATTGAAGAGCTTA AGCAGGAGAAAATCAAACAGCATTTGAGATTGAAGAGCTTA < 41bp 1 0.0236369533650889 1 0.0929311513900757 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183101645 chr1:183101625 synonymous SNV . 0 1 hm5C_associated_SNPs_3290 0 0 1 0 2 LAMC1 chr1:183101535 3'AG 183101535 Downstream 91bp
chr1 183101625 183101625 1 + G A rs12095652 183101645 + 183101625 183101665 41 GGCAGGAGAAAATCAAACAGCATTTGAGATTGAAGAGCTTA AGCAGGAGAAAATCAAACAGCATTTGAGATTGAAGAGCTTA < 41bp 1 0.0236369533650889 1 0.0929311513900757 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183101645 chr1:183101625 synonymous SNV . 0 1 hm5C_associated_SNPs_3290 0 0 1 0 2 LAMC1 chr1:183101672 5'GT 183101672 Upstream 48bp
chr1 186946869 186946869 1 + A G rs28395831 186946875 + 186946855 186946895 41 AAGATTGCCCAACCATCATCCACTTTGTTCTGGCCAACATC AAGATTGCCCAACCGTCATCCACTTTGTTCTGGCCAACATC < 41bp 1 0.172398635958334 1 0.254623800516129 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186946875 chr1:186946869 nonsynonymous SNV 0.985 0 15 hm5C_associated_SNPs_3292 0 0 0 0 1 PLA2G4A chr1:186946920 5'GT 186946920 Upstream 52bp
chr1 200817238 200817238 1 + A G rs139956440 200817245 + 200817225 200817265 41 CTCCAAACCGAGGAATCACTCGTTCTATTAGTAATGAAGGA CTCCAAACCGAGGGATCACTCGTTCTATTAGTAATGAAGGA < 41bp 1 0.102019198406127 1 0.498439699411392 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200817245 chr1:200817238 synonymous SNV . 0 14 hm5C_associated_SNPs_3301 0 0 1 0 1 CAMSAP2 chr1:200817160 3'AG 200817160 Downstream 79bp
chr1 200817239 200817239 1 + A C rs553031275 200817245 + 200817225 200817265 41 CTCCAAACCGAGGAATCACTCGTTCTATTAGTAATGAAGGA CTCCAAACCGAGGACTCACTCGTTCTATTAGTAATGAAGGA < 41bp 1 0.0826186718845279 1 0.692994594573975 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200817245 chr1:200817239 nonsynonymous SNV 1.000 0 15 hm5C_associated_SNPs_3302 0 0 1 0 1 CAMSAP2 chr1:200817160 3'AG 200817160 Downstream 80bp
chr1 200817258 200817258 1 + A C rs147174162 200817245 + 200817225 200817265 41 CTCCAAACCGAGGAATCACTCGTTCTATTAGTAATGAAGGA CTCCAAACCGAGGAATCACTCGTTCTATTAGTACTGAAGGA < 41bp 1 0.0965607712302262 1 0.578476071357727 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200817245 chr1:200817258 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_3303 0 0 1 0 1 CAMSAP2 chr1:200817160 3'AG 200817160 Downstream 99bp
chr1 201185637 201185637 1 + C A rs141101331 201185656 + 201185636 201185676 41 GCGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGC GAGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGC < 41bp 1 0.0268275575181187 1 0.282864809036255 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185656 chr1:201185637 synonymous SNV . 0 2 hm5C_associated_SNPs_3305 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 56bp
chr1 201185637 201185637 1 + C A rs141101331 201185657 + 201185637 201185677 41 CGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCC AGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCC < 41bp 1 0.204877868563693 1 0.458237260580063 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185657 chr1:201185637 synonymous SNV . 0 1 hm5C_associated_SNPs_3306 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 56bp
chr1 201185638 201185638 1 + G A rs574892301 201185656 + 201185636 201185676 41 GCGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGC GCATCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGC < 41bp 1 0.0302375680903798 1 0.308398008346558 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185656 chr1:201185638 nonsynonymous SNV 0.738 1 3 hm5C_associated_SNPs_3307 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 57bp
chr1 201185638 201185638 1 + G A rs574892301 201185657 + 201185637 201185677 41 CGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCC CATCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCC < 41bp 1 0.172795997219557 1 0.497459322214127 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185657 chr1:201185638 nonsynonymous SNV 0.738 1 2 hm5C_associated_SNPs_3308 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 57bp
chr1 201185638 201185638 1 + G A rs574892301 201185658 + 201185638 201185678 41 GTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCG ATCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCG < 41bp 1 0.280167474125516 1 0.460389673709869 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185658 chr1:201185638 nonsynonymous SNV 0.738 1 1 hm5C_associated_SNPs_3309 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 57bp
chr1 201185647 201185647 1 + C T rs140418667 201185656 + 201185636 201185676 41 GCGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGC GCGTCTGCCTCTGCTGGCGGCCCCCAAGGGACAATGGGGGC < 41bp 1 0.0267764977991998 1 0.349783480167389 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185656 chr1:201185647 nonsynonymous SNV 0.593 1 12 hm5C_associated_SNPs_3310 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 66bp
chr1 201185647 201185647 1 + C T rs140418667 201185657 + 201185637 201185677 41 CGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCC CGTCTGCCTCTGCTGGCGGCCCCCAAGGGACAATGGGGGCC < 41bp 1 0.198378082960885 1 0.572288870811462 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185657 chr1:201185647 nonsynonymous SNV 0.593 1 11 hm5C_associated_SNPs_3311 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 66bp
chr1 201185647 201185647 1 + C T rs140418667 201185658 + 201185638 201185678 41 GTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCG GTCTGCCTCTGCTGGCGGCCCCCAAGGGACAATGGGGGCCG < 41bp 1 0.296623508410642 1 0.502844452857971 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185658 chr1:201185647 nonsynonymous SNV 0.593 1 10 hm5C_associated_SNPs_3312 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 66bp
chr1 201185647 201185647 1 + C T rs140418667 201185659 + 201185639 201185679 41 TCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCGG TCTGCCTCTGCTGGCGGCCCCCAAGGGACAATGGGGGCCGG < 41bp 1 0.136690562041497 1 0.786568760871887 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185659 chr1:201185647 nonsynonymous SNV 0.593 1 9 hm5C_associated_SNPs_3313 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 66bp
chr1 201185647 201185647 1 + C T rs140418667 201185660 + 201185640 201185680 41 CTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCGGA CTGCCTCTGCTGGCGGCCCCCAAGGGACAATGGGGGCCGGA < 41bp 1 0.511320210257201 1 0.888927936553955 experiment 0.977359579485598 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185660 chr1:201185647 nonsynonymous SNV 0.593 1 8 hm5C_associated_SNPs_3314 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 66bp
chr1 201185660 201185660 1 + C A rs563943429 201185656 + 201185636 201185676 41 GCGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGC GCGTCTGCCTCCGCTGGCGGCCCCAAAGGGACAATGGGGGC < 41bp 1 0.156741836867374 1 0.51445060968399 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185656 chr1:201185660 nonsynonymous SNV 0.309 5 25 hm5C_associated_SNPs_3315 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 79bp
chr1 201185660 201185660 1 + C A rs563943429 201185657 + 201185637 201185677 41 CGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCC CGTCTGCCTCCGCTGGCGGCCCCAAAGGGACAATGGGGGCC < 41bp 1 0.144827088963804 1 0.470377415418625 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185657 chr1:201185660 nonsynonymous SNV 0.309 5 24 hm5C_associated_SNPs_3316 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 79bp
chr1 201185660 201185660 1 + C A rs563943429 201185658 + 201185638 201185678 41 GTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCG GTCTGCCTCCGCTGGCGGCCCCAAAGGGACAATGGGGGCCG < 41bp 1 0.231064146611277 1 0.461287945508957 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185658 chr1:201185660 nonsynonymous SNV 0.309 5 23 hm5C_associated_SNPs_3317 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 79bp
chr1 201185660 201185660 1 + C A rs563943429 201185659 + 201185639 201185679 41 TCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCGG TCTGCCTCCGCTGGCGGCCCCAAAGGGACAATGGGGGCCGG < 41bp 1 0.306574604397772 1 0.803586900234222 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185659 chr1:201185660 nonsynonymous SNV 0.309 5 22 hm5C_associated_SNPs_3318 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 79bp
chr1 201185660 201185660 1 + C A rs563943429 201185676 + 201185656 201185696 41 CCCCCAAGGGACAATGGGGGCCGGACTGTAGAGTGCTACGT CCCCAAAGGGACAATGGGGGCCGGACTGTAGAGTGCTACGT < 41bp 1 0.386778887829429 1 0.161520719528198 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185676 chr1:201185660 nonsynonymous SNV 0.309 5 5 hm5C_associated_SNPs_3319 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 79bp
chr1 201185660 201185660 1 + C A rs563943429 201185677 + 201185657 201185697 41 CCCCAAGGGACAATGGGGGCCGGACTGTAGAGTGCTACGTG CCCAAAGGGACAATGGGGGCCGGACTGTAGAGTGCTACGTG < 41bp 1 0.135558277973384 1 0.149978637695312 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185677 chr1:201185660 nonsynonymous SNV 0.309 5 4 hm5C_associated_SNPs_3320 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 79bp
chr1 201966486 201966486 1 + A C rs139712457 201966479 + 201966459 201966499 41 CTTCATGCCACCGTCCTTTCCATTTGGAGGAATGGAGAACC CTTCATGCCACCGTCCTTTCCATTTGGCGGAATGGAGAACC < 41bp 1 0.173999518891273 1 0.184468179941177 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNPEP ENSG00000176393 CDS Human protein_coding chr1:201966479 chr1:201966486 synonymous SNV . 0 28 hm5C_associated_SNPs_3323 0 0 1 0 1 RNPEP chr1:201966447 3'AG 201966447 Downstream 40bp
chr1 201966541 201966541 1 + C T rs79980228 201966545 + 201966525 201966565 41 CCTGCTAGCTGGGGACCGCTCCTTGGCAGATGTCATCATCC CCTGCTAGCTGGGGACTGCTCCTTGGCAGATGTCATCATCC < 41bp 1 0.211261396007432 1 0.179242759943008 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNPEP ENSG00000176393 CDS Human protein_coding chr1:201966545 chr1:201966541 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_3324 0 0 1 0 1 RNPEP chr1:201966447 3'AG 201966447 Downstream 95bp
chr1 201979801 201979801 1 + G A rs141892415 201979804 + 201979784 201979824 41 TTTCTCTCCCGCCTGCCGGCCTGCCTGCCACAGCCGGACTC TTTCTCTCCCGCCTGCCAGCCTGCCTGCCACAGCCGGACTC < 41bp 1 0.391410077131717 1 0.228085339069366 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ELF3 ENSG00000163435 UTR5 Human protein_coding chr1:201979804 chr1:201979801 . . 0 18 hm5C_associated_SNPs_3325 0 0 0 0 1 ELF3 chr1:201979834 5'GT 201979834 Upstream 34bp
chr1 201981862 201981862 1 + T A rs2819362 201981858 + 201981838 201981878 41 CTGTGGCGCAGGAGCCCCCTCCCCTGGCAGCTCTGACGTCT CTGTGGCGCAGGAGCCCCCTCCCCAGGCAGCTCTGACGTCT < 41bp 1 0.684866890622559 1 0.772916853427887 experiment 0.630266218754882 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ELF3 ENSG00000163435 CDS Human protein_coding chr1:201981858 chr1:201981862 synonymous SNV . 0 25 hm5C_associated_SNPs_3326 0 0 0 0 2 ELF3 chr1:201981768 3'AG 201981768 Downstream 95bp
chr1 201981862 201981862 1 + T A rs2819362 201981858 + 201981838 201981878 41 CTGTGGCGCAGGAGCCCCCTCCCCTGGCAGCTCTGACGTCT CTGTGGCGCAGGAGCCCCCTCCCCAGGCAGCTCTGACGTCT < 41bp 1 0.684866890622559 1 0.772916853427887 experiment 0.630266218754882 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ELF3 ENSG00000163435 CDS Human protein_coding chr1:201981858 chr1:201981862 synonymous SNV . 0 25 hm5C_associated_SNPs_3326 0 0 0 0 2 ELF3 chr1:201981887 5'GT 201981887 Upstream 26bp
chr1 202977809 202977809 1 + G A rs6678040 202977810 + 202977790 202977830 41 GGAAGCCTCTCAGGTTCCTGCAGAGGAAGCTCTTTCTGGGG GGAAGCCTCTCAGGTTCCTACAGAGGAAGCTCTTTCTGGGG < 41bp 1 0.757034042111144 1 0.659636259078979 experiment 0.485931915777712 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM183A;TMEM183B ENSG00000163444 CDS Human protein_coding chr1:202977810 chr1:202977809 nonsynonymous SNV 0.998 0 20 hm5C_associated_SNPs_3328 0 0 0 0 1 TMEM183A;TMEM183B chr1:202977771 3'AG 202977771 Downstream 39bp
chr1 203097929 203097929 1 + C T rs149147396 203097945 + 203097925 203097965 41 TGCCCCTTGGTGCCCGTCTGCTGATGTGCCCAGCCTGTGCC TGCCTCTTGGTGCCCGTCTGCTGATGTGCCCAGCCTGTGCC < 41bp 1 0.636887392271056 1 0.427301913499832 experiment 0.726225215457889 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ADORA1 ENSG00000163485 UTR5 Human protein_coding chr1:203097945 chr1:203097929 . . 0 5 hm5C_associated_SNPs_3329 0 0 0 0 1 ADORA1 chr1:203097913 3'AG 203097913 Downstream 17bp
chr1 203097932 203097932 1 + T G rs201792430 203097945 + 203097925 203097965 41 TGCCCCTTGGTGCCCGTCTGCTGATGTGCCCAGCCTGTGCC TGCCCCTGGGTGCCCGTCTGCTGATGTGCCCAGCCTGTGCC < 41bp 1 0.666818941005724 1 0.281493902206421 experiment 0.666362117988553 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ADORA1 ENSG00000163485 UTR5 Human protein_coding chr1:203097945 chr1:203097932 . . 0 8 hm5C_associated_SNPs_3330 0 0 0 0 1 ADORA1 chr1:203097913 3'AG 203097913 Downstream 20bp
chr1 204957870 204957870 1 + C G rs142292676 204957878 + 204957858 204957898 41 CTTTACCCTCAGCGCCAGGACGCAGGTGGGCTCTGGGGAAG CTTTACCCTCAGGGCCAGGACGCAGGTGGGCTCTGGGGAAG < 41bp 1 0.753123649313457 1 0.738233089447021 experiment 0.493752701373086 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NFASC ENSG00000163531 CDS Human protein_coding chr1:204957878 chr1:204957870 nonsynonymous SNV 0.989 1 13 hm5C_associated_SNPs_3379 0 0 0 0 1 NFASC chr1:204957934 5'GT 204957934 Upstream 65bp
chr1 206902144 206902144 1 + G A rs145730948 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCCGCACATCGTACGGATCGTGGATGTATACGAGAATCT < 41bp 1 0.502334658608975 1 0.21772712469101 experiment 0.995330682782051 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902144 synonymous SNV . 0 30 hm5C_associated_SNPs_3382 0 0 1 0 2 MAPKAPK2 chr1:206902055 3'AG 206902055 Downstream 90bp
chr1 206902144 206902144 1 + G A rs145730948 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCCGCACATCGTACGGATCGTGGATGTATACGAGAATCT < 41bp 1 0.502334658608975 1 0.21772712469101 experiment 0.995330682782051 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902144 synonymous SNV . 0 30 hm5C_associated_SNPs_3382 0 0 1 0 2 MAPKAPK2 chr1:206902194 5'GT 206902194 Upstream 51bp
chr1 214794279 214794279 1 + G A rs114104425 214794259 + 214794239 214794279 41 ACAATTCTAGCAGTCCTCATCTTTTGGATCAATTAAAAGCG ACAATTCTAGCAGTCCTCATCTTTTGGATCAATTAAAAGCA < 41bp 1 0.0399663746329679 1 0.147414118051529 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CENPF ENSG00000117724 CDS Human protein_coding chr1:214794259 chr1:214794279 synonymous SNV . 0 41 hm5C_associated_SNPs_3397 0 0 1 0 1 CENPF chr1:214794289 5'GT 214794289 Upstream 11bp
chr1 220279330 220279330 1 + G A rs143373097 220279315 + 220279295 220279335 41 TTACCTGCAAATCATGTGACCATGGCAAAAGGAACGGGATT TTACCTGCAAATCATGTGACCATGGCAAAAGGAACAGGATT < 41bp 1 0.192793939109741 1 0.423068046569824 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IARS2 ENSG00000067704 CDS Human protein_coding chr1:220279315 chr1:220279330 synonymous SNV . 0 36 hm5C_associated_SNPs_3407 0 0 1 0 2 IARS2 chr1:220279233 3'AG 220279233 Downstream 98bp
chr1 220279330 220279330 1 + G A rs143373097 220279315 + 220279295 220279335 41 TTACCTGCAAATCATGTGACCATGGCAAAAGGAACGGGATT TTACCTGCAAATCATGTGACCATGGCAAAAGGAACAGGATT < 41bp 1 0.192793939109741 1 0.423068046569824 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IARS2 ENSG00000067704 CDS Human protein_coding chr1:220279315 chr1:220279330 synonymous SNV . 0 36 hm5C_associated_SNPs_3407 0 0 1 0 2 IARS2 chr1:220279402 5'GT 220279402 Upstream 73bp
chr1 220928376 220928376 1 + T C rs371348 220928383 + 220928363 220928403 41 TCATTTATGAGAATAACTGCCTGATCTTCAGGGCTCCAGAC TCATTTATGAGAACAACTGCCTGATCTTCAGGGCTCCAGAC < 41bp 1 0.454537039889894 1 0.0354971885681152 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC2 ENSG00000117791 CDS Human protein_coding chr1:220928383 chr1:220928376 synonymous SNV . 0 14 hm5C_associated_SNPs_3410 0 0 1 0 2 MARC2 chr1:220928289 3'AG 220928289 Downstream 88bp
chr1 220928376 220928376 1 + T C rs371348 220928383 + 220928363 220928403 41 TCATTTATGAGAATAACTGCCTGATCTTCAGGGCTCCAGAC TCATTTATGAGAACAACTGCCTGATCTTCAGGGCTCCAGAC < 41bp 1 0.454537039889894 1 0.0354971885681152 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC2 ENSG00000117791 CDS Human protein_coding chr1:220928383 chr1:220928376 synonymous SNV . 0 14 hm5C_associated_SNPs_3410 0 0 1 0 2 MARC2 chr1:220928462 5'GT 220928462 Upstream 87bp
chr1 220928376 220928376 1 + T C rs371348 220928388 + 220928368 220928408 41 TATGAGAATAACTGCCTGATCTTCAGGGCTCCAGACATGGA TATGAGAACAACTGCCTGATCTTCAGGGCTCCAGACATGGA < 41bp 1 0.729015298987148 1 0.198908060789108 experiment 0.541969402025703 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC2 ENSG00000117791 CDS Human protein_coding chr1:220928388 chr1:220928376 synonymous SNV . 0 9 hm5C_associated_SNPs_3411 0 0 1 0 2 MARC2 chr1:220928289 3'AG 220928289 Downstream 88bp
chr1 220928376 220928376 1 + T C rs371348 220928388 + 220928368 220928408 41 TATGAGAATAACTGCCTGATCTTCAGGGCTCCAGACATGGA TATGAGAACAACTGCCTGATCTTCAGGGCTCCAGACATGGA < 41bp 1 0.729015298987148 1 0.198908060789108 experiment 0.541969402025703 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC2 ENSG00000117791 CDS Human protein_coding chr1:220928388 chr1:220928376 synonymous SNV . 0 9 hm5C_associated_SNPs_3411 0 0 1 0 2 MARC2 chr1:220928462 5'GT 220928462 Upstream 87bp
chr1 220964926 220964926 1 + C T rs35887054 220964927 + 220964907 220964947 41 TGACCTGCGATGGTGACACCCTGACTCTCAGTGCAGCCTAC TGACCTGCGATGGTGACACTCTGACTCTCAGTGCAGCCTAC < 41bp 1 0.516811550072502 1 0.112009823322296 experiment 0.966376899854996 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC1 ENSG00000186205 CDS Human protein_coding chr1:220964927 chr1:220964926 synonymous SNV . 0 20 hm5C_associated_SNPs_3413 0 0 1 0 2 MARC1 chr1:220964833 3'AG 220964833 Downstream 94bp
chr1 220964926 220964926 1 + C T rs35887054 220964927 + 220964907 220964947 41 TGACCTGCGATGGTGACACCCTGACTCTCAGTGCAGCCTAC TGACCTGCGATGGTGACACTCTGACTCTCAGTGCAGCCTAC < 41bp 1 0.516811550072502 1 0.112009823322296 experiment 0.966376899854996 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC1 ENSG00000186205 CDS Human protein_coding chr1:220964927 chr1:220964926 synonymous SNV . 0 20 hm5C_associated_SNPs_3413 0 0 1 0 2 MARC1 chr1:220965006 5'GT 220965006 Upstream 81bp
chr1 220964926 220964926 1 + C T rs35887054 220964933 + 220964913 220964953 41 GCGATGGTGACACCCTGACTCTCAGTGCAGCCTACACAAAG GCGATGGTGACACTCTGACTCTCAGTGCAGCCTACACAAAG < 41bp 1 0.708242883170399 1 0.287999451160431 experiment 0.583514233659203 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC1 ENSG00000186205 CDS Human protein_coding chr1:220964933 chr1:220964926 synonymous SNV . 0 14 hm5C_associated_SNPs_3414 0 0 1 0 2 MARC1 chr1:220964833 3'AG 220964833 Downstream 94bp
chr1 220964926 220964926 1 + C T rs35887054 220964933 + 220964913 220964953 41 GCGATGGTGACACCCTGACTCTCAGTGCAGCCTACACAAAG GCGATGGTGACACTCTGACTCTCAGTGCAGCCTACACAAAG < 41bp 1 0.708242883170399 1 0.287999451160431 experiment 0.583514233659203 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC1 ENSG00000186205 CDS Human protein_coding chr1:220964933 chr1:220964926 synonymous SNV . 0 14 hm5C_associated_SNPs_3414 0 0 1 0 2 MARC1 chr1:220965006 5'GT 220965006 Upstream 81bp
chr1 222833538 222833538 1 + C G rs2291835 222833549 + 222833529 222833569 41 CCAGAATGGCTCTTTTGGCCCATCCCCTGTGAGTGGTGGAG CCAGAATGGGTCTTTTGGCCCATCCCCTGTGAGTGGTGGAG < 41bp 1 0.103827430623094 1 0.0965434014797211 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MIA3 ENSG00000154305 CDS Human protein_coding chr1:222833549 chr1:222833538 synonymous SNV . 0 10 hm5C_associated_SNPs_3429 0 0 1 0 1 MIA3 chr1:222833519 3'AG 222833519 Downstream 20bp
chr1 222898824 222898824 1 + G A rs17163847 222898817 + 222898797 222898837 41 TCATCTCCCAAAACTCATTACACCTGCGGAAAAAGGAAGAG TCATCTCCCAAAACTCATTACACCTGCAGAAAAAGGAAGAG < 41bp 1 0.329788678125669 1 0.204894453287125 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BROX ENSG00000162819 CDS Human protein_coding chr1:222898817 chr1:222898824 synonymous SNV . 0 28 hm5C_associated_SNPs_3430 0 0 1 0 2 BROX chr1:222898792 3'AG 222898792 Downstream 33bp
chr1 222898824 222898824 1 + G A rs17163847 222898817 + 222898797 222898837 41 TCATCTCCCAAAACTCATTACACCTGCGGAAAAAGGAAGAG TCATCTCCCAAAACTCATTACACCTGCAGAAAAAGGAAGAG < 41bp 1 0.329788678125669 1 0.204894453287125 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BROX ENSG00000162819 CDS Human protein_coding chr1:222898817 chr1:222898824 synonymous SNV . 0 28 hm5C_associated_SNPs_3430 0 0 1 0 2 BROX chr1:222898897 5'GT 222898897 Upstream 74bp
chr1 223900486 223900486 1 + C T rs28370008 223900495 + 223900475 223900515 41 CTCTTCCAGGACCCGTCCTTCCCGGCCATCCCCTCGGCCCT CTCTTCCAGGATCCGTCCTTCCCGGCCATCCCCTCGGCCCT < 41bp 1 0.5100061040879 1 0.174251556396484 experiment 0.979987791824199 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223900495 chr1:223900486 synonymous SNV . 0 12 hm5C_associated_SNPs_3434 0 0 1 0 1 CAPN2 chr1:223900579 5'GT 223900579 Upstream 94bp
chr1 223900511 223900511 1 + G A rs146572729 223900495 + 223900475 223900515 41 CTCTTCCAGGACCCGTCCTTCCCGGCCATCCCCTCGGCCCT CTCTTCCAGGACCCGTCCTTCCCGGCCATCCCCTCGACCCT < 41bp 1 0.516335528571734 1 0.139478385448456 experiment 0.967328942856532 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223900495 chr1:223900511 nonsynonymous SNV 0.077 1 37 hm5C_associated_SNPs_3435 0 0 1 0 1 CAPN2 chr1:223900579 5'GT 223900579 Upstream 69bp
chr1 223934720 223934720 1 + G A rs17600 223934719 + 223934699 223934739 41 GATCAACGGATGCTATGAAGCGCTATCAGGGGGTGCCACCA GATCAACGGATGCTATGAAGCACTATCAGGGGGTGCCACCA < 41bp 1 0.716956762581622 1 0.298216879367828 experiment 0.566086474836755 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223934719 chr1:223934720 synonymous SNV . 0 22 hm5C_associated_SNPs_3436 0 0 1 0 1 CAPN2 chr1:223934699 3'AG 223934699 Downstream 22bp
chr1 223934720 223934720 1 + G A rs17600 223934721 + 223934701 223934741 41 TCAACGGATGCTATGAAGCGCTATCAGGGGGTGCCACCACT TCAACGGATGCTATGAAGCACTATCAGGGGGTGCCACCACT < 41bp 1 0.0766832183815273 1 0.0456267297267914 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223934721 chr1:223934720 synonymous SNV . 0 20 hm5C_associated_SNPs_3437 0 0 1 0 1 CAPN2 chr1:223934699 3'AG 223934699 Downstream 22bp
chr1 224553693 224553693 1 + G A rs183720647 224553676 + 224553656 224553696 41 CTTCTCAACTTACCTGTTGCCACTTGGAATATATATCGGTG CTTCTCAACTTACCTGTTGCCACTTGGAATATATATCAGTG < 41bp 1 0.290113406082832 1 0.42575141787529 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNIH4 ENSG00000143771 CDS Human protein_coding chr1:224553676 chr1:224553693 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_3440 0 0 1 0 1 CNIH4 chr1:224553693 5'GT 224553693 Upstream 1bp
chr1 227171802 227171802 1 + C T rs200375779 227171811 + 227171791 227171831 41 CCAGGGACCTGCTGAAGGGCCACCCCTTCTTCTATGTGCCT CCAGGGACCTGTTGAAGGGCCACCCCTTCTTCTATGTGCCT < 41bp 1 0.17055400089939 1 0.0789862275123596 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COQ8A ENSG00000163050 CDS Human protein_coding chr1:227171811 chr1:227171802 synonymous SNV . 0 12 hm5C_associated_SNPs_3443 0 0 1 0 1 COQ8A chr1:227171795 3'AG 227171795 Downstream 8bp
chr1 228333240 228333240 1 + G A rs141117528 228333243 + 228333223 228333263 41 CCCAGGCCTGTGGTGCTGAGCGGGCCTTCGGGAGCTGGGAA CCCAGGCCTGTGGTGCTAAGCGGGCCTTCGGGAGCTGGGAA < 41bp 1 0.785675718488627 1 0.897470116615295 experiment 0.428648563022747 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333243 chr1:228333240 nonsynonymous SNV 0.713 0 18 hm5C_associated_SNPs_3451 0 0 1 0 2 GUK1 chr1:228333212 3'AG 228333212 Downstream 29bp
chr1 228333240 228333240 1 + G A rs141117528 228333243 + 228333223 228333263 41 CCCAGGCCTGTGGTGCTGAGCGGGCCTTCGGGAGCTGGGAA CCCAGGCCTGTGGTGCTAAGCGGGCCTTCGGGAGCTGGGAA < 41bp 1 0.785675718488627 1 0.897470116615295 experiment 0.428648563022747 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333243 chr1:228333240 nonsynonymous SNV 0.713 0 18 hm5C_associated_SNPs_3451 0 0 1 0 2 GUK1 chr1:228333325 5'GT 228333325 Upstream 86bp
chr1 228333240 228333240 1 + G A rs141117528 228333247 + 228333227 228333267 41 GGCCTGTGGTGCTGAGCGGGCCTTCGGGAGCTGGGAAGAGC GGCCTGTGGTGCTAAGCGGGCCTTCGGGAGCTGGGAAGAGC < 41bp 1 0.0342605773977053 1 0.0995963513851166 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333247 chr1:228333240 nonsynonymous SNV 0.713 0 14 hm5C_associated_SNPs_3452 0 0 1 0 2 GUK1 chr1:228333212 3'AG 228333212 Downstream 29bp
chr1 228333240 228333240 1 + G A rs141117528 228333247 + 228333227 228333267 41 GGCCTGTGGTGCTGAGCGGGCCTTCGGGAGCTGGGAAGAGC GGCCTGTGGTGCTAAGCGGGCCTTCGGGAGCTGGGAAGAGC < 41bp 1 0.0342605773977053 1 0.0995963513851166 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333247 chr1:228333240 nonsynonymous SNV 0.713 0 14 hm5C_associated_SNPs_3452 0 0 1 0 2 GUK1 chr1:228333325 5'GT 228333325 Upstream 86bp
chr1 228333701 228333701 1 + C A rs199710311 228333718 + 228333698 228333738 41 CCCCGATGGGTGACAGGTCTCTCTGCTAGATACCACGAGGA CCCAGATGGGTGACAGGTCTCTCTGCTAGATACCACGAGGA < 41bp 1 0.595431577216636 1 0.123850166797638 experiment 0.809136845566728 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GUK1 ENSG00000143774 intronic Human protein_coding chr1:228333718 chr1:228333701 . . 0 4 hm5C_associated_SNPs_3453 0 0 1 0 1 GUK1 chr1:228333768 5'GT 228333768 Upstream 68bp
chr1 228362682 228362682 1 + G A rs2298014 228362665 + 228362645 228362685 41 CCTCACCCAGGATGAAGGCCCAGCCCTGGTGCCCGGGGGCC CCTCACCCAGGATGAAGGCCCAGCCCTGGTGCCCGGGAGCC < 41bp 1 0.479413574450011 1 0.263744354248047 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IBA57 ENSG00000181873 CDS Human protein_coding chr1:228362665 chr1:228362682 nonsynonymous SNV 0.002 0 38 hm5C_associated_SNPs_3454 1 0 0 0 1 IBA57 chr1:228362730 5'GT 228362730 Upstream 49bp
chr1 228459670 228459670 1 + G C rs115028988 228459666 + 228459646 228459686 41 AAGGAGCAGGTGGTGTTTGCCAAGGATCAGCCGGTGCACAG AAGGAGCAGGTGGTGTTTGCCAAGCATCAGCCGGTGCACAG < 41bp 1 0.143430804400969 1 0.77953714132309 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228459666 chr1:228459670 nonsynonymous SNV 0.020 0 25 hm5C_associated_SNPs_3455 0 0 1 0 1 OBSCN chr1:228459626 3'AG 228459626 Downstream 45bp
chr1 228459677 228459677 1 + C T rs117651701 228459666 + 228459646 228459686 41 AAGGAGCAGGTGGTGTTTGCCAAGGATCAGCCGGTGCACAG AAGGAGCAGGTGGTGTTTGCCAAGGATCAGCTGGTGCACAG < 41bp 1 0.264942228231389 1 0.883443713188171 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228459666 chr1:228459677 nonsynonymous SNV 0.002 0 32 hm5C_associated_SNPs_3456 0 0 1 0 1 OBSCN chr1:228459626 3'AG 228459626 Downstream 52bp
chr1 228470918 228470918 1 + C T rs114058903 228470936 + 228470916 228470956 41 CTCAAGGACGCGGGCGAGTACACGTGTGAGGTGGAGGCTTC CTTAAGGACGCGGGCGAGTACACGTGTGAGGTGGAGGCTTC < 41bp 1 0.215545669477118 1 0.428753852844238 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228470936 chr1:228470918 synonymous SNV . 0 3 hm5C_associated_SNPs_3457 0 0 0 0 1 OBSCN chr1:228470985 5'GT 228470985 Upstream 68bp
chr1 228496014 228496014 1 + G A rs876180 228496008 + 228495988 228496028 41 CACACCCTGCGGCTGAAGGGCGTGACGCCCGAGGACGCTGG CACACCCTGCGGCTGAAGGGCGTGACACCCGAGGACGCTGG < 41bp 1 0.102838407749382 1 0.523855149745941 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496008 chr1:228496014 synonymous SNV . 0 27 hm5C_associated_SNPs_3458 0 0 0 0 1 OBSCN chr1:228496084 5'GT 228496084 Upstream 71bp
chr1 228496014 228496014 1 + G A rs876180 228496015 + 228495995 228496035 41 TGCGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTC TGCGGCTGAAGGGCGTGACACCCGAGGACGCTGGCACTGTC < 41bp 1 0.181064693810275 1 0.703297078609467 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496015 chr1:228496014 synonymous SNV . 0 20 hm5C_associated_SNPs_3459 0 0 0 0 1 OBSCN chr1:228496084 5'GT 228496084 Upstream 71bp
chr1 228496014 228496014 1 + G A rs876180 228496016 + 228495996 228496036 41 GCGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCT GCGGCTGAAGGGCGTGACACCCGAGGACGCTGGCACTGTCT < 41bp 1 0.0869988240652658 1 0.546299159526825 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496016 chr1:228496014 synonymous SNV . 0 19 hm5C_associated_SNPs_3460 0 0 0 0 1 OBSCN chr1:228496084 5'GT 228496084 Upstream 71bp
chr1 228496014 228496014 1 + G A rs876180 228496017 + 228495997 228496037 41 CGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCTC CGGCTGAAGGGCGTGACACCCGAGGACGCTGGCACTGTCTC < 41bp 1 0.257989680565207 1 0.902024984359741 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496017 chr1:228496014 synonymous SNV . 0 18 hm5C_associated_SNPs_3461 0 0 0 0 1 OBSCN chr1:228496084 5'GT 228496084 Upstream 71bp
chr1 228496018 228496018 1 + G A rs375491688 228496008 + 228495988 228496028 41 CACACCCTGCGGCTGAAGGGCGTGACGCCCGAGGACGCTGG CACACCCTGCGGCTGAAGGGCGTGACGCCCAAGGACGCTGG < 41bp 1 0.107563398815063 1 0.576729238033295 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496008 chr1:228496018 nonsynonymous SNV 0.098 2 31 hm5C_associated_SNPs_3462 0 0 0 0 1 OBSCN chr1:228496084 5'GT 228496084 Upstream 67bp
chr1 228496018 228496018 1 + G A rs375491688 228496015 + 228495995 228496035 41 TGCGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTC TGCGGCTGAAGGGCGTGACGCCCAAGGACGCTGGCACTGTC < 41bp 1 0.103161707552116 1 0.497593343257904 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496015 chr1:228496018 nonsynonymous SNV 0.098 2 24 hm5C_associated_SNPs_3463 0 0 0 0 1 OBSCN chr1:228496084 5'GT 228496084 Upstream 67bp
chr1 228496018 228496018 1 + G A rs375491688 228496016 + 228495996 228496036 41 GCGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCT GCGGCTGAAGGGCGTGACGCCCAAGGACGCTGGCACTGTCT < 41bp 1 0.0543201648845817 1 0.274348497390747 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496016 chr1:228496018 nonsynonymous SNV 0.098 2 23 hm5C_associated_SNPs_3464 0 0 0 0 1 OBSCN chr1:228496084 5'GT 228496084 Upstream 67bp
chr1 228496018 228496018 1 + G A rs375491688 228496017 + 228495997 228496037 41 CGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCTC CGGCTGAAGGGCGTGACGCCCAAGGACGCTGGCACTGTCTC < 41bp 1 0.206726164527887 1 0.877441048622131 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496017 chr1:228496018 nonsynonymous SNV 0.098 2 22 hm5C_associated_SNPs_3465 0 0 0 0 1 OBSCN chr1:228496084 5'GT 228496084 Upstream 67bp
chr1 228526011 228526011 1 + C T rs11577699 228526010 + 228525990 228526030 41 GCTGTCACCTGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCC GCTGTCACCTGAGTGGGGGGCTGCTGAGGCCCCTGAGTTCC < 41bp 1 0.0841256515700373 1 0.406694710254669 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526010 chr1:228526011 synonymous SNV . 0 22 hm5C_associated_SNPs_3466 0 0 0 0 2 OBSCN chr1:228525991 3'AG 228525991 Downstream 21bp
chr1 228526011 228526011 1 + C T rs11577699 228526010 + 228525990 228526030 41 GCTGTCACCTGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCC GCTGTCACCTGAGTGGGGGGCTGCTGAGGCCCCTGAGTTCC < 41bp 1 0.0841256515700373 1 0.406694710254669 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526010 chr1:228526011 synonymous SNV . 0 22 hm5C_associated_SNPs_3466 0 0 0 0 2 OBSCN chr1:228526073 5'GT 228526073 Upstream 63bp
chr1 228526011 228526011 1 + C T rs11577699 228526019 + 228525999 228526039 41 TGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGG TGAGTGGGGGGCTGCTGAGGCCCCTGAGTTCCCTGGGGAGG < 41bp 1 0.0602666838566509 1 0.243758320808411 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526019 chr1:228526011 synonymous SNV . 0 13 hm5C_associated_SNPs_3467 0 0 0 0 2 OBSCN chr1:228525991 3'AG 228525991 Downstream 21bp
chr1 228526011 228526011 1 + C T rs11577699 228526019 + 228525999 228526039 41 TGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGG TGAGTGGGGGGCTGCTGAGGCCCCTGAGTTCCCTGGGGAGG < 41bp 1 0.0602666838566509 1 0.243758320808411 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526019 chr1:228526011 synonymous SNV . 0 13 hm5C_associated_SNPs_3467 0 0 0 0 2 OBSCN chr1:228526073 5'GT 228526073 Upstream 63bp
chr1 228526011 228526011 1 + C T rs11577699 228526020 + 228526000 228526040 41 GAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGC GAGTGGGGGGCTGCTGAGGCCCCTGAGTTCCCTGGGGAGGC < 41bp 1 0.074315404620871 1 0.207011222839355 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526020 chr1:228526011 synonymous SNV . 0 12 hm5C_associated_SNPs_3468 0 0 0 0 2 OBSCN chr1:228525991 3'AG 228525991 Downstream 21bp
chr1 228526011 228526011 1 + C T rs11577699 228526020 + 228526000 228526040 41 GAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGC GAGTGGGGGGCTGCTGAGGCCCCTGAGTTCCCTGGGGAGGC < 41bp 1 0.074315404620871 1 0.207011222839355 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526020 chr1:228526011 synonymous SNV . 0 12 hm5C_associated_SNPs_3468 0 0 0 0 2 OBSCN chr1:228526073 5'GT 228526073 Upstream 63bp
chr1 228526011 228526011 1 + C T rs11577699 228526021 + 228526001 228526041 41 AGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGCT AGTGGGGGGCTGCTGAGGCCCCTGAGTTCCCTGGGGAGGCT < 41bp 1 0.10676031726568 1 0.323525667190552 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526021 chr1:228526011 synonymous SNV . 0 11 hm5C_associated_SNPs_3469 0 0 0 0 2 OBSCN chr1:228525991 3'AG 228525991 Downstream 21bp
chr1 228526011 228526011 1 + C T rs11577699 228526021 + 228526001 228526041 41 AGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGCT AGTGGGGGGCTGCTGAGGCCCCTGAGTTCCCTGGGGAGGCT < 41bp 1 0.10676031726568 1 0.323525667190552 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526021 chr1:228526011 synonymous SNV . 0 11 hm5C_associated_SNPs_3469 0 0 0 0 2 OBSCN chr1:228526073 5'GT 228526073 Upstream 63bp
chr1 228526011 228526011 1 + C T rs11577699 228526022 + 228526002 228526042 41 GTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGCTG GTGGGGGGCTGCTGAGGCCCCTGAGTTCCCTGGGGAGGCTG < 41bp 1 0.197009494725354 1 0.406018555164337 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526022 chr1:228526011 synonymous SNV . 0 10 hm5C_associated_SNPs_3470 0 0 0 0 2 OBSCN chr1:228525991 3'AG 228525991 Downstream 21bp
chr1 228526011 228526011 1 + C T rs11577699 228526022 + 228526002 228526042 41 GTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGCTG GTGGGGGGCTGCTGAGGCCCCTGAGTTCCCTGGGGAGGCTG < 41bp 1 0.197009494725354 1 0.406018555164337 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526022 chr1:228526011 synonymous SNV . 0 10 hm5C_associated_SNPs_3470 0 0 0 0 2 OBSCN chr1:228526073 5'GT 228526073 Upstream 63bp
chr1 229439639 229439639 1 + T A rs15452 229439650 + 229439630 229439670 41 TACTCTGTATGGAAGTAGATCTTTATGGGGAAAAGAGAATT TACTCTGTAAGGAAGTAGATCTTTATGGGGAAAAGAGAATT < 41bp 1 0.287372397765876 1 0.177530407905579 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RAB4A ENSG00000168118 UTR3 Human protein_coding chr1:229439650 chr1:229439639 . . 0 10 hm5C_associated_SNPs_3473 0 0 1 0 1 RAB4A chr1:229439553 3'AG 229439553 Downstream 87bp
chr1 230384970 230384970 1 + G A rs1923950 230384969 + 230384949 230384989 41 ATTCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCC ATTCAAGTGGGATTACATGACACCTGAGCAGAGAAGGTCCC < 41bp 1 0.468745887120695 1 0.207816541194916 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384969 chr1:230384970 synonymous SNV . 0 22 hm5C_associated_SNPs_3474 0 0 1 0 2 GALNT2 chr1:230384930 3'AG 230384930 Downstream 41bp
chr1 230384970 230384970 1 + G A rs1923950 230384969 + 230384949 230384989 41 ATTCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCC ATTCAAGTGGGATTACATGACACCTGAGCAGAGAAGGTCCC < 41bp 1 0.468745887120695 1 0.207816541194916 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384969 chr1:230384970 synonymous SNV . 0 22 hm5C_associated_SNPs_3474 0 0 1 0 2 GALNT2 chr1:230385017 5'GT 230385017 Upstream 48bp
chr1 230384970 230384970 1 + G A rs1923950 230384971 + 230384951 230384991 41 TCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCCGG TCAAGTGGGATTACATGACACCTGAGCAGAGAAGGTCCCGG < 41bp 1 0.317546378059145 1 0.0672382414340973 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384971 chr1:230384970 synonymous SNV . 0 20 hm5C_associated_SNPs_3475 0 0 1 0 2 GALNT2 chr1:230384930 3'AG 230384930 Downstream 41bp
chr1 230384970 230384970 1 + G A rs1923950 230384971 + 230384951 230384991 41 TCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCCGG TCAAGTGGGATTACATGACACCTGAGCAGAGAAGGTCCCGG < 41bp 1 0.317546378059145 1 0.0672382414340973 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384971 chr1:230384970 synonymous SNV . 0 20 hm5C_associated_SNPs_3475 0 0 1 0 2 GALNT2 chr1:230385017 5'GT 230385017 Upstream 48bp
chr1 231135910 231135910 1 + A G rs189216908 231135914 + 231135894 231135934 41 CTTCACTATCTGTGGCATGACCAGCTGTATCTGAAAGAGAA CTTCACTATCTGTGGCGTGACCAGCTGTATCTGAAAGAGAA < 41bp 1 0.281213372105089 1 0.241216123104095 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARV1 ENSG00000173409 UTR3 Human protein_coding chr1:231135914 chr1:231135910 . . 0 17 hm5C_associated_SNPs_3478 0 0 1 0 1 ARV1 chr1:231135884 3'AG 231135884 Downstream 27bp
chr1 231135910 231135910 1 + A G rs189216908 231135915 + 231135895 231135935 41 TTCACTATCTGTGGCATGACCAGCTGTATCTGAAAGAGAAA TTCACTATCTGTGGCGTGACCAGCTGTATCTGAAAGAGAAA < 41bp 1 0.698156919574292 1 0.459951639175415 experiment 0.603686160851415 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARV1 ENSG00000173409 UTR3 Human protein_coding chr1:231135915 chr1:231135910 . . 0 16 hm5C_associated_SNPs_3479 0 0 1 0 1 ARV1 chr1:231135884 3'AG 231135884 Downstream 27bp
chr1 231413306 231413306 1 + T C rs150776112 231413315 + 231413295 231413335 41 ACAAATAGTTATGGAAAATTCGGTCACGTAATTACTCTCAT ACAAATAGTTACGGAAAATTCGGTCACGTAATTACTCTCAT < 41bp 1 0.598923210645109 1 0.438599139451981 experiment 0.802153578709783 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GNPAT ENSG00000116906 UTR3 Human protein_coding chr1:231413315 chr1:231413306 . . 0 12 hm5C_associated_SNPs_3491 0 0 1 0 1 GNPAT chr1:231413245 3'AG 231413245 Downstream 62bp
chr1 233489682 233489682 1 + G A rs56268427 233489675 + 233489655 233489695 41 GCCCATTCCATCCACCTGCCCTGAGCCGTTTGCCAAGCTCA GCCCATTCCATCCACCTGCCCTGAGCCATTTGCCAAGCTCA < 41bp 1 0.314341619253029 1 0.090310275554657 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233489675 chr1:233489682 synonymous SNV . 0 28 hm5C_associated_SNPs_3492 0 0 1 0 1 MAP3K21 chr1:233489701 5'GT 233489701 Upstream 20bp
chr1 235577753 235577753 1 + C G rs147489278 235577765 + 235577745 235577785 41 CAGGCACCCGACAGGAGGATCCTTTATTCGTCCGAACAAGG CAGGCACCGGACAGGAGGATCCTTTATTCGTCCGAACAAGG < 41bp 1 0.0170115824520609 1 0.0330307185649872 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235577765 chr1:235577753 nonsynonymous SNV 0.989 4 9 hm5C_associated_SNPs_3495 0 0 1 0 1 TBCE chr1:235577748 3'AG 235577748 Downstream 6bp
chr1 235577756 235577756 1 + C A rs144747353 235577765 + 235577745 235577785 41 CAGGCACCCGACAGGAGGATCCTTTATTCGTCCGAACAAGG CAGGCACCCGAAAGGAGGATCCTTTATTCGTCCGAACAAGG < 41bp 1 0.0114852832601086 1 0.0323952436447144 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235577765 chr1:235577756 nonsynonymous SNV 0.994 1 12 hm5C_associated_SNPs_3496 1 0 1 0 1 TBCE chr1:235577748 3'AG 235577748 Downstream 9bp
chr1 235577776 235577776 1 + C T rs62620041 235577765 + 235577745 235577785 41 CAGGCACCCGACAGGAGGATCCTTTATTCGTCCGAACAAGG CAGGCACCCGACAGGAGGATCCTTTATTCGTTCGAACAAGG < 41bp 1 0.0156332955647719 1 0.0361113548278809 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235577765 chr1:235577776 nonsynonymous SNV 0.666 4 32 hm5C_associated_SNPs_3497 2 0 1 1 1 TBCE chr1:235577748 3'AG 235577748 Downstream 29bp
chr1 235600723 235600723 1 + A G rs35663526 235600742 + 235600722 235600762 41 AAGCAGAGACGGCGCGACTACTCATTATCGCCAGCATTGGC AGGCAGAGACGGCGCGACTACTCATTATCGCCAGCATTGGC < 41bp 1 0.610616063784473 1 0.0738880336284637 experiment 0.778767872431053 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235600742 chr1:235600723 synonymous SNV . 0 2 hm5C_associated_SNPs_3498 1 0 1 0 1 TBCE chr1:235600637 3'AG 235600637 Downstream 87bp
chr1 237058828 237058828 1 + C G rs1131449 237058834 + 237058814 237058854 41 ACCATGTGGAGACTCGCAGACATCGAGCAGTCTACAGGTAG ACCATGTGGAGACTGGCAGACATCGAGCAGTCTACAGGTAG < 41bp 1 0.296481797268255 1 0.156151533126831 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTR ENSG00000116984 CDS Human protein_coding chr1:237058834 chr1:237058828 synonymous SNV . 0 15 hm5C_associated_SNPs_3503 0 0 0 0 1 MTR chr1:237058850 5'GT 237058850 Upstream 23bp
chr1 237058835 237058835 1 + A G rs149476106 237058834 + 237058814 237058854 41 ACCATGTGGAGACTCGCAGACATCGAGCAGTCTACAGGTAG ACCATGTGGAGACTCGCAGACGTCGAGCAGTCTACAGGTAG < 41bp 1 0.348422452658255 1 0.160982131958008 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTR ENSG00000116984 CDS Human protein_coding chr1:237058834 chr1:237058835 nonsynonymous SNV 0.005 0 22 hm5C_associated_SNPs_3504 1 0 0 0 1 MTR chr1:237058850 5'GT 237058850 Upstream 16bp
chr1 242030151 242030151 1 + A G rs735943 242030150 + 242030130 242030170 41 AGCCTGCCCATTCAAGAAGTCATAGTTGGGATGACAAAACA AGCCTGCCCATTCAAGAAGTCGTAGTTGGGATGACAAAACA < 41bp 1 0.300022302700431 1 0.254491329193115 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXO1 ENSG00000174371 CDS Human protein_coding chr1:242030150 chr1:242030151 nonsynonymous SNV 0.933 0 22 hm5C_associated_SNPs_3512 0 0 1 0 1 EXO1 chr1:242030132 3'AG 242030132 Downstream 20bp
chr1 248039245 248039245 1 + C T rs59513666 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGAGTCTGCTTTTGACCGCCGACCTGCGCAGTGTGCA < 41bp 1 0.697740042487108 1 0.58323872089386 experiment 0.604519915025784 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039245 synonymous SNV . 0 15 hm5C_associated_SNPs_3518 0 0 0 0 2 TRIM58 chr1:248039202 3'AG 248039202 Downstream 44bp
chr1 248039245 248039245 1 + C T rs59513666 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGAGTCTGCTTTTGACCGCCGACCTGCGCAGTGTGCA < 41bp 1 0.697740042487108 1 0.58323872089386 experiment 0.604519915025784 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039245 synonymous SNV . 0 15 hm5C_associated_SNPs_3518 0 0 0 0 2 TRIM58 chr1:248039339 5'GT 248039339 Upstream 95bp
chr2 15770968 15770968 1 + G A rs139636088 15770972 + 15770952 15770992 41 GGCTGCCCTTGAAAAGGAGGCGCAGACATCTTTCCTGCATC GGCTGCCCTTGAAAAGAAGGCGCAGACATCTTTCCTGCATC < 41bp 1 0.584869016313597 1 0.444306463003159 experiment 0.830261967372806 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX1 ENSG00000079785 CDS Human protein_coding chr2:15770972 chr2:15770968 nonsynonymous SNV 0.996 1 17 hm5C_associated_SNPs_3613 0 0 1 0 1 DDX1 chr2:15770900 3'AG 15770900 Downstream 69bp
chr2 15770968 15770968 1 + G A rs139636088 15770974 + 15770954 15770994 41 CTGCCCTTGAAAAGGAGGCGCAGACATCTTTCCTGCATCTT CTGCCCTTGAAAAGAAGGCGCAGACATCTTTCCTGCATCTT < 41bp 1 0.200003152343216 1 0.127003401517868 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX1 ENSG00000079785 CDS Human protein_coding chr2:15770974 chr2:15770968 nonsynonymous SNV 0.996 1 15 hm5C_associated_SNPs_3614 0 0 1 0 1 DDX1 chr2:15770900 3'AG 15770900 Downstream 69bp
chr2 24163433 24163433 1 + G A rs112997568 24163437 + 24163417 24163457 41 CGCTCCGGCTCTGAAGGGCTCCAGCCAAACGGAGCCCGCGG CGCTCCGGCTCTGAAGAGCTCCAGCCAAACGGAGCCCGCGG < 41bp 1 0.537418338813076 1 0.66068434715271 experiment 0.925163322373849 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UBXN2A ENSG00000173960 UTR5 Human protein_coding chr2:24163437 chr2:24163433 . . 0 17 hm5C_associated_SNPs_3620 0 0 1 0 1 UBXN2A chr2:24163518 5'GT 24163518 Upstream 86bp
chr2 24163433 24163433 1 + G A rs112997568 24163438 + 24163418 24163458 41 GCTCCGGCTCTGAAGGGCTCCAGCCAAACGGAGCCCGCGGC GCTCCGGCTCTGAAGAGCTCCAGCCAAACGGAGCCCGCGGC < 41bp 1 0.629937399052404 1 0.715233325958252 experiment 0.740125201895192 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UBXN2A ENSG00000173960 UTR5 Human protein_coding chr2:24163438 chr2:24163433 . . 0 16 hm5C_associated_SNPs_3621 0 0 1 0 1 UBXN2A chr2:24163518 5'GT 24163518 Upstream 86bp
chr2 24163433 24163433 1 + G A rs112997568 24163451 + 24163431 24163471 41 AGGGCTCCAGCCAAACGGAGCCCGCGGCCAAACGGTGCCTG AGAGCTCCAGCCAAACGGAGCCCGCGGCCAAACGGTGCCTG < 41bp 1 0.29239576199681 1 0.366005301475525 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UBXN2A ENSG00000173960 UTR5 Human protein_coding chr2:24163451 chr2:24163433 . . 0 3 hm5C_associated_SNPs_3622 0 0 1 0 1 UBXN2A chr2:24163518 5'GT 24163518 Upstream 86bp
chr2 24163433 24163433 1 + G A rs112997568 24163452 + 24163432 24163472 41 GGGCTCCAGCCAAACGGAGCCCGCGGCCAAACGGTGCCTGC GAGCTCCAGCCAAACGGAGCCCGCGGCCAAACGGTGCCTGC < 41bp 1 0.570852003320246 1 0.697417974472046 experiment 0.858295993359508 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UBXN2A ENSG00000173960 UTR5 Human protein_coding chr2:24163452 chr2:24163433 . . 0 2 hm5C_associated_SNPs_3623 0 0 1 0 1 UBXN2A chr2:24163518 5'GT 24163518 Upstream 86bp
chr2 24191899 24191899 1 + A C rs184521190 24191879 + 24191859 24191899 41 TTCAAGCGATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGA TTCAAGCGATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGC < 41bp 1 0.299974621191024 1 0.448801517486572 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBXN2A ENSG00000173960 intronic Human protein_coding chr2:24191879 chr2:24191899 . . 0 41 hm5C_associated_SNPs_3624 0 0 0 4 1 UBXN2A chr2:24191905 5'GT 24191905 Upstream 7bp
chr2 24276974 24276974 1 + C T rs190430161 24276975 + 24276955 24276995 41 CATCCTCTACTCCTCCCAGCCAGTCTAGTGGGAATGATAAA CATCCTCTACTCCTCCCAGTCAGTCTAGTGGGAATGATAAA < 41bp 1 0.141745464385507 1 0.692674219608307 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FKBP1B ENSG00000119782 CDS Human protein_coding chr2:24276975 chr2:24276974 nonsynonymous SNV . 0 20 hm5C_associated_SNPs_3625 0 0 1 0 2 FKBP1B chr2:24276974 3'AG 24276974 Downstream 1bp
chr2 24276974 24276974 1 + C T rs190430161 24276975 + 24276955 24276995 41 CATCCTCTACTCCTCCCAGCCAGTCTAGTGGGAATGATAAA CATCCTCTACTCCTCCCAGTCAGTCTAGTGGGAATGATAAA < 41bp 1 0.141745464385507 1 0.692674219608307 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FKBP1B ENSG00000119782 CDS Human protein_coding chr2:24276975 chr2:24276974 nonsynonymous SNV . 0 20 hm5C_associated_SNPs_3625 0 0 1 0 2 FKBP1B chr2:24277062 5'GT 24277062 Upstream 89bp
chr2 24888621 24888621 1 + G A rs185518589 24888633 + 24888613 24888653 41 AACAGCACGGAAAAGAGGCGCAGGGAGCAAGAAAATAAATA AACAGCACAGAAAAGAGGCGCAGGGAGCAAGAAAATAAATA < 41bp 1 0.257852171945238 1 0.586201786994934 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24888633 chr2:24888621 synonymous SNV . 0 9 hm5C_associated_SNPs_3626 0 0 1 0 1 NCOA1 chr2:24888618 3'AG 24888618 Downstream 4bp
chr2 27292989 27292989 1 + G A rs140335340 27292979 + 27292959 27292999 41 GGCTGCCTCAGGCCAGGCCCCCACGGCCCCGCTCTGCCCCT GGCTGCCTCAGGCCAGGCCCCCACGGCCCCACTCTGCCCCT < 41bp 1 0.379712985508673 1 0.424928426742554 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27292979 chr2:27292989 nonsynonymous SNV 0.998 0 31 hm5C_associated_SNPs_3670 0 0 0 0 1 AGBL5 chr2:27292960 3'AG 27292960 Downstream 30bp
chr2 27302056 27302056 1 + C T rs201008654 27302048 + 27302028 27302068 41 ACACAGGTTCCAGTGGGGCCCTCAGCCCCGGGGGGCCCCAG ACACAGGTTCCAGTGGGGCCCTCAGCCCTGGGGGGCCCCAG < 41bp 1 0.533904171847983 1 0.201965898275375 experiment 0.932191656304034 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302048 chr2:27302056 synonymous SNV . 0 29 hm5C_associated_SNPs_3671 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 48bp
chr2 27302056 27302056 1 + C T rs201008654 27302063 + 27302043 27302083 41 GGGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCC GGGCCCTCAGCCCTGGGGGGCCCCAGGCCCAGATTGCCCCC < 41bp 1 0.354743006478125 1 0.221380829811096 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302063 chr2:27302056 synonymous SNV . 0 14 hm5C_associated_SNPs_3672 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 48bp
chr2 27302056 27302056 1 + C T rs201008654 27302064 + 27302044 27302084 41 GGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCC GGCCCTCAGCCCTGGGGGGCCCCAGGCCCAGATTGCCCCCC < 41bp 1 0.321225450645426 1 0.557114839553833 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302064 chr2:27302056 synonymous SNV . 0 13 hm5C_associated_SNPs_3673 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 48bp
chr2 27302056 27302056 1 + C T rs201008654 27302065 + 27302045 27302085 41 GCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCG GCCCTCAGCCCTGGGGGGCCCCAGGCCCAGATTGCCCCCCG < 41bp 1 0.607516998700239 1 0.682278692722321 experiment 0.784966002599521 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302065 chr2:27302056 synonymous SNV . 0 12 hm5C_associated_SNPs_3674 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 48bp
chr2 27302056 27302056 1 + C T rs201008654 27302066 + 27302046 27302086 41 CCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCGG CCCTCAGCCCTGGGGGGCCCCAGGCCCAGATTGCCCCCCGG < 41bp 1 0.627791342740807 1 0.879024803638458 experiment 0.744417314518386 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302066 chr2:27302056 synonymous SNV . 0 11 hm5C_associated_SNPs_3675 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 48bp
chr2 27440785 27440785 1 + C T rs1275536 27440789 + 27440769 27440809 41 ACCCCGAGGCCCTCACCGATCCCTCCTACAAGGCACAGATC ACCCCGAGGCCCTCACTGATCCCTCCTACAAGGCACAGATC < 41bp 1 0.0535751343117121 1 0.112846612930298 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27440789 chr2:27440785 synonymous SNV . 0 17 hm5C_associated_SNPs_3677 0 0 1 0 1 CAD chr2:27440884 5'GT 27440884 Upstream 100bp
chr2 27449440 27449440 1 + G A rs61737363 27449451 + 27449431 27449471 41 CTCTGCCCTGGCCAGTAAGGCCACAGGTTATCCACTGGCTT CTCTGCCCTAGCCAGTAAGGCCACAGGTTATCCACTGGCTT < 41bp 1 0.133846054452972 1 0.153986573219299 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27449451 chr2:27449440 synonymous SNV . 0 10 hm5C_associated_SNPs_3678 0 0 1 0 2 CAD chr2:27449393 3'AG 27449393 Downstream 48bp
chr2 27449440 27449440 1 + G A rs61737363 27449451 + 27449431 27449471 41 CTCTGCCCTGGCCAGTAAGGCCACAGGTTATCCACTGGCTT CTCTGCCCTAGCCAGTAAGGCCACAGGTTATCCACTGGCTT < 41bp 1 0.133846054452972 1 0.153986573219299 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27449451 chr2:27449440 synonymous SNV . 0 10 hm5C_associated_SNPs_3678 0 0 1 0 2 CAD chr2:27449517 5'GT 27449517 Upstream 78bp
chr2 27455023 27455023 1 + C T rs144292695 27455031 + 27455011 27455051 41 GACAGCCTTTGCCGCCAGACCTGCTGCAACAGGCCAAGTGT GACAGCCTTTGCTGCCAGACCTGCTGCAACAGGCCAAGTGT < 41bp 1 0.291253393264137 1 0.455658972263336 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27455031 chr2:27455023 nonsynonymous SNV 0.065 3 13 hm5C_associated_SNPs_3679 0 0 1 0 1 CAD chr2:27455092 5'GT 27455092 Upstream 70bp
chr2 27455024 27455024 1 + G A rs147159197 27455031 + 27455011 27455051 41 GACAGCCTTTGCCGCCAGACCTGCTGCAACAGGCCAAGTGT GACAGCCTTTGCCACCAGACCTGCTGCAACAGGCCAAGTGT < 41bp 1 0.249184722081254 1 0.271042287349701 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27455031 chr2:27455024 synonymous SNV . 0 14 hm5C_associated_SNPs_3680 0 0 1 0 1 CAD chr2:27455092 5'GT 27455092 Upstream 69bp
chr2 27456275 27456275 1 + G A rs143119049 27456273 + 27456253 27456293 41 ACATGGCCATGGCGTTGCATCGGCAGCAGTGCCGGGTGCTG ACATGGCCATGGCGTTGCATCGACAGCAGTGCCGGGTGCTG < 41bp 1 0.66698876781562 1 0.585732281208038 experiment 0.666022464368759 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27456273 chr2:27456275 synonymous SNV . 0 23 hm5C_associated_SNPs_3681 0 0 1 0 1 CAD chr2:27456180 3'AG 27456180 Downstream 96bp
chr2 29159814 29159814 1 + T C rs145420330 29159809 + 29159789 29159829 41 TTACAAAGAGGTTACAAGGACATCCTAATAGGTAAGATTAA TTACAAAGAGGTTACAAGGACATCCCAATAGGTAAGATTAA < 41bp 1 0.0740293481823461 1 0.190014392137527 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR43 ENSG00000163811 CDS Human protein_coding chr2:29159809 chr2:29159814 synonymous SNV . 0 26 hm5C_associated_SNPs_3693 0 0 1 0 2 WDR43 chr2:29159788 3'AG 29159788 Downstream 27bp
chr2 29159814 29159814 1 + T C rs145420330 29159809 + 29159789 29159829 41 TTACAAAGAGGTTACAAGGACATCCTAATAGGTAAGATTAA TTACAAAGAGGTTACAAGGACATCCCAATAGGTAAGATTAA < 41bp 1 0.0740293481823461 1 0.190014392137527 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR43 ENSG00000163811 CDS Human protein_coding chr2:29159809 chr2:29159814 synonymous SNV . 0 26 hm5C_associated_SNPs_3693 0 0 1 0 2 WDR43 chr2:29159819 5'GT 29159819 Upstream 6bp
chr2 32773012 32773012 1 + T C rs142781350 32773028 + 32773008 32773048 41 CTTCTGGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAGG CTTCCGGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAGG < 41bp 1 0.156035733090535 1 0.433984160423279 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773028 chr2:32773012 synonymous SNV . 0 5 hm5C_associated_SNPs_3709 0 0 1 0 2 BIRC6 chr2:32772917 3'AG 32772917 Downstream 96bp
chr2 32773012 32773012 1 + T C rs142781350 32773028 + 32773008 32773048 41 CTTCTGGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAGG CTTCCGGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAGG < 41bp 1 0.156035733090535 1 0.433984160423279 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773028 chr2:32773012 synonymous SNV . 0 5 hm5C_associated_SNPs_3709 0 0 1 0 2 BIRC6 chr2:32773081 5'GT 32773081 Upstream 70bp
chr2 33706278 33706278 1 + G C rs569573093 33706275 + 33706255 33706295 41 GTTTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCACGATC GTTTCACTCTGTCGCCCAGGCTGCAGTGCAGTGGCACGATC < 41bp 1 0.620663938320459 1 0.32966822385788 experiment 0.758672123359083 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RASGRP3 ENSG00000152689 UTR5 Human protein_coding chr2:33706275 chr2:33706278 . . 0 24 hm5C_associated_SNPs_3710 0 0 0 0 1 RASGRP3 chr2:33706250 3'AG 33706250 Downstream 29bp
chr2 33706278 33706278 1 + G C rs569573093 33706283 + 33706263 33706303 41 CTGTCGCCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCA CTGTCGCCCAGGCTGCAGTGCAGTGGCACGATCTCGGCTCA < 41bp 1 0.454981289188873 1 0.616784930229187 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RASGRP3 ENSG00000152689 UTR5 Human protein_coding chr2:33706283 chr2:33706278 . . 0 16 hm5C_associated_SNPs_3711 0 0 0 0 1 RASGRP3 chr2:33706250 3'AG 33706250 Downstream 29bp
chr2 33706278 33706278 1 + G C rs569573093 33706289 + 33706269 33706309 41 CCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAA CCCAGGCTGCAGTGCAGTGGCACGATCTCGGCTCACTGCAA < 41bp 1 0.7552310465298 1 0.571538686752319 experiment 0.489537906940401 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RASGRP3 ENSG00000152689 UTR5 Human protein_coding chr2:33706289 chr2:33706278 . . 0 10 hm5C_associated_SNPs_3712 0 0 0 0 1 RASGRP3 chr2:33706250 3'AG 33706250 Downstream 29bp
chr2 37458862 37458862 1 + T C rs141773676 37458880 + 37458860 37458900 41 GCTGAGGTCAGGTTTGGGGCCGTTGTGTGCCGTGGCGCGCG GCCGAGGTCAGGTTTGGGGCCGTTGTGTGCCGTGGCGCGCG < 41bp 1 0.541138385059934 1 0.116649478673935 experiment 0.917723229880132 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37458880 chr2:37458862 nonsynonymous SNV 0.001 1 3 hm5C_associated_SNPs_3714 0 0 1 0 1 NDUFAF7 chr2:37458903 5'GT 37458903 Upstream 42bp
chr2 37458885 37458885 1 + T G rs530133541 37458880 + 37458860 37458900 41 GCTGAGGTCAGGTTTGGGGCCGTTGTGTGCCGTGGCGCGCG GCTGAGGTCAGGTTTGGGGCCGTTGGGTGCCGTGGCGCGCG < 41bp 1 0.637927312562941 1 0.291138112545013 experiment 0.724145374874117 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37458880 chr2:37458885 nonsynonymous SNV 0.001 1 26 hm5C_associated_SNPs_3715 0 0 1 0 1 NDUFAF7 chr2:37458903 5'GT 37458903 Upstream 19bp
chr2 37458898 37458898 1 + G A rs72875762 37458880 + 37458860 37458900 41 GCTGAGGTCAGGTTTGGGGCCGTTGTGTGCCGTGGCGCGCG GCTGAGGTCAGGTTTGGGGCCGTTGTGTGCCGTGGCGCACG < 41bp 1 0.54852481694585 1 0.08832186460495 experiment 0.9029503661083 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37458880 chr2:37458898 nonsynonymous SNV 0.006 2 39 hm5C_associated_SNPs_3716 1 0 1 0 1 NDUFAF7 chr2:37458903 5'GT 37458903 Upstream 6bp
chr2 37475339 37475339 1 + T A rs369731209 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATAAGTTAATGAATCCAAAGAAGATGGGAGAGAGA < 41bp 1 0.367111687344792 1 0.595303356647491 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475339 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_3717 0 0 1 1 1 NDUFAF7 chr2:37475278 3'AG 37475278 Downstream 62bp
chr2 37475339 37475339 1 + T A rs369731209 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATAAGTTAATGAATCCAAAGAAGATGGGAGAGAGAT < 41bp 1 0.38002884041131 1 0.3550044298172 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475339 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_3718 0 0 1 1 1 NDUFAF7 chr2:37475278 3'AG 37475278 Downstream 62bp
chr2 39664597 39664597 1 + G A rs188536328 39664578 + 39664558 39664598 41 CGCGTTCCGGCTCCGCGCGCCTGCCAGGCCGGGGCCGGCGG CGCGTTCCGGCTCCGCGCGCCTGCCAGGCCGGGGCCGGCAG < 41bp 1 0.603139698481566 1 0.176165014505386 experiment 0.793720603036868 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LOC728730 ENSG00000231312 ncRNA_exonic Human antisense chr2:39664578 chr2:39664597 . . 0 40 hm5C_associated_SNPs_3721 0 0 1 0 1 LOC728730 chr2:39664676 5'GT 39664676 Upstream 80bp
chr2 44021766 44021766 1 + T C rs115529828 44021747 + 44021727 44021767 41 AAGCAGTTTCTGAAATGAGACAGAAGATCTGGAATAATATG AAGCAGTTTCTGAAATGAGACAGAAGATCTGGAATAATACG < 41bp 1 0.789751107724743 1 0.39539447426796 experiment 0.420497784550514 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DYNC2LI1 ENSG00000138036 CDS Human protein_coding chr2:44021747 chr2:44021766 nonsynonymous SNV 0.997 1 40 hm5C_associated_SNPs_3731 0 0 0 0 1 DYNC2LI1 chr2:44021782 5'GT 44021782 Upstream 17bp
chr2 54858664 54858664 1 + C T rs2229503 54858649 + 54858629 54858669 41 ACTGGATGGAACGAGCTCCACAAGATGTGGGAGAACAGACA ACTGGATGGAACGAGCTCCACAAGATGTGGGAGAATAGACA < 41bp 1 0.61431605880134 1 0.511878490447998 experiment 0.77136788239732 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54858649 chr2:54858664 synonymous SNV . 0 36 hm5C_associated_SNPs_3757 0 0 1 0 1 SPTBN1 chr2:54858748 5'GT 54858748 Upstream 85bp
chr2 54885159 54885159 1 + C T rs190911566 54885175 + 54885155 54885195 41 GGTTCTCTGCCCTGGAAAGGCTGACTACAGTAAGTGGCCGC GGTTTTCTGCCCTGGAAAGGCTGACTACAGTAAGTGGCCGC < 41bp 1 0.282238560430761 1 0.199776470661163 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54885175 chr2:54885159 synonymous SNV . 0 5 hm5C_associated_SNPs_3758 0 0 1 0 1 SPTBN1 chr2:54885183 5'GT 54885183 Upstream 25bp
chr2 54886335 54886335 1 + G A rs140377991 54886315 + 54886295 54886335 41 AGTTACTGGAAGTGCGCAGACAGCAAGAGGAAGAGGAGAGG AGTTACTGGAAGTGCGCAGACAGCAAGAGGAAGAGGAGAGA < 41bp 1 0.611331472017298 1 0.747583031654358 experiment 0.777337055965404 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54886315 chr2:54886335 synonymous SNV . 0 41 hm5C_associated_SNPs_3759 0 0 1 0 2 SPTBN1 chr2:54886291 3'AG 54886291 Downstream 45bp
chr2 54886335 54886335 1 + G A rs140377991 54886315 + 54886295 54886335 41 AGTTACTGGAAGTGCGCAGACAGCAAGAGGAAGAGGAGAGG AGTTACTGGAAGTGCGCAGACAGCAAGAGGAAGAGGAGAGA < 41bp 1 0.611331472017298 1 0.747583031654358 experiment 0.777337055965404 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54886315 chr2:54886335 synonymous SNV . 0 41 hm5C_associated_SNPs_3759 0 0 1 0 2 SPTBN1 chr2:54886403 5'GT 54886403 Upstream 69bp
chr2 54886335 54886335 1 + G A rs140377991 54886318 + 54886298 54886338 41 TACTGGAAGTGCGCAGACAGCAAGAGGAAGAGGAGAGGAAG TACTGGAAGTGCGCAGACAGCAAGAGGAAGAGGAGAGAAAG < 41bp 1 0.7107154695908 1 0.75758945941925 experiment 0.578569060818399 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54886318 chr2:54886335 synonymous SNV . 0 38 hm5C_associated_SNPs_3760 0 0 1 0 2 SPTBN1 chr2:54886291 3'AG 54886291 Downstream 45bp
chr2 54886335 54886335 1 + G A rs140377991 54886318 + 54886298 54886338 41 TACTGGAAGTGCGCAGACAGCAAGAGGAAGAGGAGAGGAAG TACTGGAAGTGCGCAGACAGCAAGAGGAAGAGGAGAGAAAG < 41bp 1 0.7107154695908 1 0.75758945941925 experiment 0.578569060818399 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54886318 chr2:54886335 synonymous SNV . 0 38 hm5C_associated_SNPs_3760 0 0 1 0 2 SPTBN1 chr2:54886403 5'GT 54886403 Upstream 69bp
chr2 55191144 55191144 1 + T G rs534776499 55191153 + 55191133 55191173 41 CAAGGTGAGCTTGGGCCATGCGGCCAGGTGTGCAGCCTACA CAAGGTGAGCTGGGGCCATGCGGCCAGGTGTGCAGCCTACA < 41bp 1 0.297998269265467 1 0.603720307350159 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EML6 ENSG00000214595 CDS Human protein_coding chr2:55191153 chr2:55191144 nonsynonymous SNV 0.997 3 12 hm5C_associated_SNPs_3761 0 0 1 0 1 EML6 chr2:55191122 3'AG 55191122 Downstream 23bp
chr2 55459923 55459923 1 + C G rs543843126 55459912 + 55459892 55459932 41 CTTCTCTTGTGATCCCTGACCTAACCTGTCTCTTCCTTTTC CTTCTCTTGTGATCCCTGACCTAACCTGTCTGTTCCTTTTC < 41bp 1 0.113225115996386 1 0.0645709335803986 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS27A ENSG00000143947 UTR5 Human protein_coding chr2:55459912 chr2:55459923 . . 0 32 hm5C_associated_SNPs_3763 0 0 1 0 1 RPS27A chr2:55460008 5'GT 55460008 Upstream 86bp
chr2 55459927 55459927 1 + C G rs192298313 55459912 + 55459892 55459932 41 CTTCTCTTGTGATCCCTGACCTAACCTGTCTCTTCCTTTTC CTTCTCTTGTGATCCCTGACCTAACCTGTCTCTTCGTTTTC < 41bp 1 0.0943114472216594 1 0.0570149123668671 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS27A ENSG00000143947 UTR5 Human protein_coding chr2:55459912 chr2:55459927 . . 0 36 hm5C_associated_SNPs_3764 0 0 1 0 1 RPS27A chr2:55460008 5'GT 55460008 Upstream 82bp
chr2 55461991 55461991 1 + A C rs2230613 55461971 + 55461951 55461991 41 ATTCTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGA ATTCTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGC < 41bp 1 0.167641328353461 1 0.072692334651947 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461971 chr2:55461991 synonymous SNV . 0 41 hm5C_associated_SNPs_3765 0 0 1 3 1 RPS27A chr2:55461967 3'AG 55461967 Downstream 25bp
chr2 55461991 55461991 1 + A C rs2230613 55461974 + 55461954 55461994 41 CTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGAC CTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGCGAC < 41bp 1 0.135783132053706 1 0.136200338602066 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461974 chr2:55461991 synonymous SNV . 0 38 hm5C_associated_SNPs_3766 0 0 1 3 1 RPS27A chr2:55461967 3'AG 55461967 Downstream 25bp
chr2 55461991 55461991 1 + A C rs2230613 55461979 + 55461959 55461999 41 ATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGT ATTAACAGGAGTCTACTCTTCATCTTGTGTTGCGACTTCGT < 41bp 1 0.184577844500369 1 0.0366038382053375 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461979 chr2:55461991 synonymous SNV . 0 33 hm5C_associated_SNPs_3767 0 0 1 3 1 RPS27A chr2:55461967 3'AG 55461967 Downstream 25bp
chr2 55461991 55461991 1 + A C rs2230613 55462007 + 55461987 55462027 41 GTTGAGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGT GTTGCGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGT < 41bp 1 0.381594366282405 1 0.206069052219391 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55462007 chr2:55461991 synonymous SNV . 0 5 hm5C_associated_SNPs_3768 0 0 1 3 1 RPS27A chr2:55461967 3'AG 55461967 Downstream 25bp
chr2 60987375 60987375 1 + A G rs140672094 60987390 + 60987370 60987410 41 AATTAATTGACGCCATGAAACCATTTGGAGTGTTTGAAGAT AATTAGTTGACGCCATGAAACCATTTGGAGTGTTTGAAGAT < 41bp 1 0.086795965076582 1 0.0692794322967529 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLG ENSG00000115421 CDS Human protein_coding chr2:60987390 chr2:60987375 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_3769 0 0 1 0 1 PAPOLG chr2:60987430 5'GT 60987430 Upstream 56bp
chr2 70096862 70096862 1 + T C rs114517801 70096880 + 70096860 70096900 41 CGTTGGACAGGTTTTAACTTCGGCTTCGACCTACTTGTAAC CGCTGGACAGGTTTTAACTTCGGCTTCGACCTACTTGTAAC < 41bp 1 0.548753839690961 1 0.378552049398422 experiment 0.902492320618079 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GMCL1 ENSG00000087338 CDS Human protein_coding chr2:70096880 chr2:70096862 synonymous SNV . 0 3 hm5C_associated_SNPs_3781 0 0 1 0 1 GMCL1 chr2:70096851 3'AG 70096851 Downstream 12bp
chr2 70096978 70096978 1 + G A rs61756683 70096964 + 70096944 70096984 41 CAGCCATGTAGCGGATCTGTCAGTTTACAGCCTCGAAGGAG CAGCCATGTAGCGGATCTGTCAGTTTACAGCCTCAAAGGAG < 41bp 1 0.376177829723441 1 0.203588545322418 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GMCL1 ENSG00000087338 CDS Human protein_coding chr2:70096964 chr2:70096978 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_3782 0 0 1 0 1 GMCL1 chr2:70096996 5'GT 70096996 Upstream 19bp
chr2 70122254 70122254 1 + G A rs200831065 70122272 + 70122252 70122292 41 CGGGAGAGAGAACGCAGGCGCCGAGAAAGGTCCAGGTCTCG CGAGAGAGAGAACGCAGGCGCCGAGAAAGGTCCAGGTCTCG < 41bp 1 0.77199196835131 1 0.508658170700073 experiment 0.456016063297379 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70122272 chr2:70122254 synonymous SNV . 0 3 hm5C_associated_SNPs_3783 0 0 1 0 2 SNRNP27 chr2:70122226 3'AG 70122226 Downstream 29bp
chr2 70122254 70122254 1 + G A rs200831065 70122272 + 70122252 70122292 41 CGGGAGAGAGAACGCAGGCGCCGAGAAAGGTCCAGGTCTCG CGAGAGAGAGAACGCAGGCGCCGAGAAAGGTCCAGGTCTCG < 41bp 1 0.77199196835131 1 0.508658170700073 experiment 0.456016063297379 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70122272 chr2:70122254 synonymous SNV . 0 3 hm5C_associated_SNPs_3783 0 0 1 0 2 SNRNP27 chr2:70122346 5'GT 70122346 Upstream 93bp
chr2 71148395 71148395 1 + C A rs56075602 71148413 + 71148393 71148433 41 AGCTGAACCTCTCCGAGACCCAGGTAAGAGACCAGGGCCAG AGATGAACCTCTCCGAGACCCAGGTAAGAGACCAGGGCCAG < 41bp 1 0.717769933999316 1 0.836291909217834 experiment 0.564460132001368 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VAX2 ENSG00000116035 CDS Human protein_coding chr2:71148413 chr2:71148395 nonsynonymous SNV 0.993 5 3 hm5C_associated_SNPs_3790 0 0 0 0 1 VAX2 chr2:71148415 5'GT 71148415 Upstream 21bp
chr2 71297695 71297695 1 + T C rs2287328 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGACGGACTGAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.631106540093751 1 0.358749747276306 experiment 0.737786919812498 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297695 synonymous SNV . 0 12 hm5C_associated_SNPs_3791 0 0 1 2 2 NAGK chr2:71297632 3'AG 71297632 Downstream 64bp
chr2 71297695 71297695 1 + T C rs2287328 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGACGGACTGAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.631106540093751 1 0.358749747276306 experiment 0.737786919812498 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297695 synonymous SNV . 0 12 hm5C_associated_SNPs_3791 0 0 1 2 2 NAGK chr2:71297716 5'GT 71297716 Upstream 22bp
chr2 71780248 71780248 1 + C T rs35721373 71780268 + 71780248 71780288 41 CGGGAACAAGTTCGACATGACCTGCCTGCCGCTGGCCTCCA TGGGAACAAGTTCGACATGACCTGCCTGCCGCTGGCCTCCA < 41bp 1 0.152049953931463 1 0.0116254687309265 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71780268 chr2:71780248 synonymous SNV . 0 1 hm5C_associated_SNPs_3792 3 0 0 0 1 DYSF chr2:71780318 5'GT 71780318 Upstream 71bp
chr2 71780260 71780260 1 + C T rs550180529 71780268 + 71780248 71780288 41 CGGGAACAAGTTCGACATGACCTGCCTGCCGCTGGCCTCCA CGGGAACAAGTTTGACATGACCTGCCTGCCGCTGGCCTCCA < 41bp 1 0.146021900217271 1 0.0167361795902252 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71780268 chr2:71780260 synonymous SNV . 0 13 hm5C_associated_SNPs_3793 0 0 0 0 1 DYSF chr2:71780318 5'GT 71780318 Upstream 59bp
chr2 71780265 71780265 1 + T C rs141867897 71780268 + 71780248 71780288 41 CGGGAACAAGTTCGACATGACCTGCCTGCCGCTGGCCTCCA CGGGAACAAGTTCGACACGACCTGCCTGCCGCTGGCCTCCA < 41bp 1 0.113496890806506 1 0.0110599100589752 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71780268 chr2:71780265 nonsynonymous SNV 0.954 0 18 hm5C_associated_SNPs_3794 1 0 0 0 1 DYSF chr2:71780318 5'GT 71780318 Upstream 54bp
chr2 71780278 71780278 1 + G A rs115849497 71780268 + 71780248 71780288 41 CGGGAACAAGTTCGACATGACCTGCCTGCCGCTGGCCTCCA CGGGAACAAGTTCGACATGACCTGCCTGCCACTGGCCTCCA < 41bp 1 0.164895639182702 1 0.016107589006424 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71780268 chr2:71780278 synonymous SNV . 0 31 hm5C_associated_SNPs_3795 3 0 0 0 1 DYSF chr2:71780318 5'GT 71780318 Upstream 41bp
chr2 71783120 71783120 1 + T G rs548062068 71783115 + 71783095 71783135 41 GAAGCTGGCCTGGAGCAGGTCCACCTGGCCCTGAAGGCGCA GAAGCTGGCCTGGAGCAGGTCCACCGGGCCCTGAAGGCGCA < 41bp 1 0.174782912947089 1 0.0858902931213379 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71783115 chr2:71783120 nonsynonymous SNV 0.998 3 26 hm5C_associated_SNPs_3796 0 0 0 0 2 DYSF chr2:71783095 3'AG 71783095 Downstream 26bp
chr2 71783120 71783120 1 + T G rs548062068 71783115 + 71783095 71783135 41 GAAGCTGGCCTGGAGCAGGTCCACCTGGCCCTGAAGGCGCA GAAGCTGGCCTGGAGCAGGTCCACCGGGCCCTGAAGGCGCA < 41bp 1 0.174782912947089 1 0.0858902931213379 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71783115 chr2:71783120 nonsynonymous SNV 0.998 3 26 hm5C_associated_SNPs_3796 0 0 0 0 2 DYSF chr2:71783201 5'GT 71783201 Upstream 82bp
chr2 71783132 71783132 1 + C T rs145007061 71783115 + 71783095 71783135 41 GAAGCTGGCCTGGAGCAGGTCCACCTGGCCCTGAAGGCGCA GAAGCTGGCCTGGAGCAGGTCCACCTGGCCCTGAAGGTGCA < 41bp 1 0.149239036943895 1 0.0575733482837677 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71783115 chr2:71783132 nonsynonymous SNV 0.821 3 38 hm5C_associated_SNPs_3797 1 0 0 0 2 DYSF chr2:71783095 3'AG 71783095 Downstream 38bp
chr2 71783132 71783132 1 + C T rs145007061 71783115 + 71783095 71783135 41 GAAGCTGGCCTGGAGCAGGTCCACCTGGCCCTGAAGGCGCA GAAGCTGGCCTGGAGCAGGTCCACCTGGCCCTGAAGGTGCA < 41bp 1 0.149239036943895 1 0.0575733482837677 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71783115 chr2:71783132 nonsynonymous SNV 0.821 3 38 hm5C_associated_SNPs_3797 1 0 0 0 2 DYSF chr2:71783201 5'GT 71783201 Upstream 70bp
chr2 73461483 73461483 1 + C A rs1053329 73461503 + 73461483 73461523 41 CGGGCCGCTGAATAAGCTTCCAAAATGATGGTGAGTGGCGT AGGGCCGCTGAATAAGCTTCCAAAATGATGGTGAGTGGCGT < 41bp 1 0.63649780800897 1 0.75880491733551 experiment 0.72700438398206 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCT7 ENSG00000135624 UTR5 Human protein_coding chr2:73461503 chr2:73461483 . . 0 1 hm5C_associated_SNPs_3803 0 0 1 0 1 CCT7 chr2:73461512 5'GT 73461512 Upstream 30bp
chr2 73461493 73461493 1 + A C rs550584392 73461503 + 73461483 73461523 41 CGGGCCGCTGAATAAGCTTCCAAAATGATGGTGAGTGGCGT CGGGCCGCTGCATAAGCTTCCAAAATGATGGTGAGTGGCGT < 41bp 1 0.634323703921554 1 0.732730984687805 experiment 0.731352592156891 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCT7 ENSG00000135624 UTR5 Human protein_coding chr2:73461503 chr2:73461493 . . 0 11 hm5C_associated_SNPs_3804 0 0 1 0 1 CCT7 chr2:73461512 5'GT 73461512 Upstream 20bp
chr2 73476997 73476997 1 + G A rs567536710 73476990 + 73476970 73477010 41 CAGTGTGAATGCTCTGTCAGCAGATGTGCTGGGTCGATGCC CAGTGTGAATGCTCTGTCAGCAGATGTACTGGGTCGATGCC < 41bp 1 0.524402991810154 1 0.456431359052658 experiment 0.951194016379691 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT7 ENSG00000135624 CDS Human protein_coding chr2:73476990 chr2:73476997 synonymous SNV . 0 28 hm5C_associated_SNPs_3805 0 0 1 0 2 CCT7 chr2:73476947 3'AG 73476947 Downstream 51bp
chr2 73476997 73476997 1 + G A rs567536710 73476990 + 73476970 73477010 41 CAGTGTGAATGCTCTGTCAGCAGATGTGCTGGGTCGATGCC CAGTGTGAATGCTCTGTCAGCAGATGTACTGGGTCGATGCC < 41bp 1 0.524402991810154 1 0.456431359052658 experiment 0.951194016379691 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT7 ENSG00000135624 CDS Human protein_coding chr2:73476990 chr2:73476997 synonymous SNV . 0 28 hm5C_associated_SNPs_3805 0 0 1 0 2 CCT7 chr2:73477044 5'GT 73477044 Upstream 48bp
chr2 73476997 73476997 1 + G A rs567536710 73477009 + 73476989 73477029 41 GCAGATGTGCTGGGTCGATGCCAGGTGTTTGAAGAGACCCA GCAGATGTACTGGGTCGATGCCAGGTGTTTGAAGAGACCCA < 41bp 1 0.695406351920346 1 0.472182154655457 experiment 0.609187296159308 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT7 ENSG00000135624 CDS Human protein_coding chr2:73477009 chr2:73476997 synonymous SNV . 0 9 hm5C_associated_SNPs_3806 0 0 1 0 2 CCT7 chr2:73476947 3'AG 73476947 Downstream 51bp
chr2 73476997 73476997 1 + G A rs567536710 73477009 + 73476989 73477029 41 GCAGATGTGCTGGGTCGATGCCAGGTGTTTGAAGAGACCCA GCAGATGTACTGGGTCGATGCCAGGTGTTTGAAGAGACCCA < 41bp 1 0.695406351920346 1 0.472182154655457 experiment 0.609187296159308 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT7 ENSG00000135624 CDS Human protein_coding chr2:73477009 chr2:73476997 synonymous SNV . 0 9 hm5C_associated_SNPs_3806 0 0 1 0 2 CCT7 chr2:73477044 5'GT 73477044 Upstream 48bp
chr2 74154160 74154160 1 + C G rs145252858 74154149 + 74154129 74154169 41 GCCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAA GCCTGCACGCGGGGCGCGGGCCCCGAAGGCTGTCCATCGAA < 41bp 1 0.681706614196474 1 0.303615063428879 experiment 0.636586771607052 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154149 chr2:74154160 synonymous SNV . 0 32 hm5C_associated_SNPs_3807 2 0 1 1 1 DGUOK chr2:74154179 5'GT 74154179 Upstream 20bp
chr2 74154160 74154160 1 + C G rs145252858 74154151 + 74154131 74154171 41 CTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAAGG CTGCACGCGGGGCGCGGGCCCCGAAGGCTGTCCATCGAAGG < 41bp 1 0.746037454300412 1 0.526952624320984 experiment 0.507925091399176 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154151 chr2:74154160 synonymous SNV . 0 30 hm5C_associated_SNPs_3808 2 0 1 1 1 DGUOK chr2:74154179 5'GT 74154179 Upstream 20bp
chr2 74154160 74154160 1 + C G rs145252858 74154152 + 74154132 74154172 41 TGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAAGGC TGCACGCGGGGCGCGGGCCCCGAAGGCTGTCCATCGAAGGC < 41bp 1 0.790641637436191 1 0.77873694896698 experiment 0.418716725127618 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154152 chr2:74154160 synonymous SNV . 0 29 hm5C_associated_SNPs_3809 2 0 1 1 1 DGUOK chr2:74154179 5'GT 74154179 Upstream 20bp
chr2 74315082 74315082 1 + C T rs115293949 74315067 + 74315047 74315087 41 CTCATCCTGGCCTGGGAGGGCATTCCCCGTAGCCTCGGAGA CTCATCCTGGCCTGGGAGGGCATTCCCCGTAGCCTTGGAGA < 41bp 1 0.0204266784798798 1 0.0902539789676666 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74315067 chr2:74315082 synonymous SNV . 0 36 hm5C_associated_SNPs_3810 0 0 1 0 1 TET3 chr2:74315165 5'GT 74315165 Upstream 84bp
chr2 74643215 74643215 1 - C T rs61999261 74643210 - 74643190 74643230 41 CTCGAGGAGGGCGAGGACGTCGTAGGGGACATCTTGGCCGA CTCGAGGAGGGCGAGAACGTCGTAGGGGACATCTTGGCCGA < 41bp 1 0.667249261275275 1 0.679258108139038 experiment 0.665501477449451 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C2orf81 ENSG00000159239 CDS Human protein_coding chr2:74643210 chr2:74643215 nonsynonymous SNV 0.843 3 16 hm5C_associated_SNPs_3815 0 0 0 0 1 C2orf81 chr2:74643138 5'GT 74643138 Upstream 78bp
chr2 74756548 74756548 1 - G C rs1183739 74756536 - 74756516 74756556 41 CTGCGCCTCTTTCTCGGGATCCACGTCTTCCTGGTCAGCTG CTGCGCCTGTTTCTCGGGATCCACGTCTTCCTGGTCAGCTG < 41bp 1 0.42608100571578 1 0.0935222208499908 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AUP1 ENSG00000115307 CDS Human protein_coding chr2:74756536 chr2:74756548 synonymous SNV . 0 9 hm5C_associated_SNPs_3816 1 0 1 0 2 AUP1 chr2:74756489 5'GT 74756489 Upstream 60bp
chr2 74756548 74756548 1 - G C rs1183739 74756536 - 74756516 74756556 41 CTGCGCCTCTTTCTCGGGATCCACGTCTTCCTGGTCAGCTG CTGCGCCTGTTTCTCGGGATCCACGTCTTCCTGGTCAGCTG < 41bp 1 0.42608100571578 1 0.0935222208499908 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AUP1 ENSG00000115307 CDS Human protein_coding chr2:74756536 chr2:74756548 synonymous SNV . 0 9 hm5C_associated_SNPs_3816 1 0 1 0 2 AUP1 chr2:74756626 3'AG 74756626 Downstream 79bp
chr2 85598245 85598245 1 + G A rs145555897 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTCACCGCCCTCCGACACTACCTCT < 41bp 1 0.43080222836372 1 0.443441867828369 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598245 nonsynonymous SNV 0.185 2 20 hm5C_associated_SNPs_3817 0 0 0 4 1 ELMOD3 chr2:85598209 3'AG 85598209 Downstream 37bp
chr2 85598245 85598245 1 + G A rs145555897 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGGCTCACCGCCCTCCGACACTACCTCTTCGGG < 41bp 1 0.717993656961562 1 0.752536654472351 experiment 0.564012686076877 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598245 nonsynonymous SNV 0.185 2 15 hm5C_associated_SNPs_3818 0 0 0 4 1 ELMOD3 chr2:85598209 3'AG 85598209 Downstream 37bp
chr2 86360540 86360540 1 + G C rs35016837 86360529 + 86360509 86360549 41 AAGCATTGGATGTGGCCAATCGGCTAGAAGTGATTCCTAAA AAGCATTGGATGTGGCCAATCGGCTAGAAGTCATTCCTAAA < 41bp 1 0.545726287826383 1 0.719179630279541 experiment 0.908547424347234 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86360529 chr2:86360540 synonymous SNV . 0 32 hm5C_associated_SNPs_3820 0 0 1 0 2 PTCD3 chr2:86360469 3'AG 86360469 Downstream 72bp
chr2 86360540 86360540 1 + G C rs35016837 86360529 + 86360509 86360549 41 AAGCATTGGATGTGGCCAATCGGCTAGAAGTGATTCCTAAA AAGCATTGGATGTGGCCAATCGGCTAGAAGTCATTCCTAAA < 41bp 1 0.545726287826383 1 0.719179630279541 experiment 0.908547424347234 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86360529 chr2:86360540 synonymous SNV . 0 32 hm5C_associated_SNPs_3820 0 0 1 0 2 PTCD3 chr2:86360559 5'GT 86360559 Upstream 20bp
chr2 86439552 86439552 1 + G A rs116387151 86439559 + 86439539 86439579 41 CACTTCTGAGACGGCAAAGCCAACCACTTAGAAGCCTTCCA CACTTCTGAGACGACAAAGCCAACCACTTAGAAGCCTTCCA < 41bp 1 0.455942993251258 1 0.340664386749268 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MRPL35 ENSG00000132313 UTR3 Human protein_coding chr2:86439559 chr2:86439552 . . 0 14 hm5C_associated_SNPs_3825 0 0 1 1 1 MRPL35 chr2:86439549 3'AG 86439549 Downstream 4bp
chr2 96903691 96903691 1 + C G rs13432441 96903711 + 96903691 96903731 41 CGAAGGAGGCATGACAATGGCACGTGACCATGGGATCACTG GGAAGGAGGCATGACAATGGCACGTGACCATGGGATCACTG < 41bp 1 0.651807105108081 1 0.376739174127579 experiment 0.696385789783838 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STARD7-AS1 ENSG00000204685 ncRNA_intronic Human processed_transcript chr2:96903711 chr2:96903691 . . 0 1 hm5C_associated_SNPs_3829 0 0 0 0 1 STARD7-AS1 chr2:96903643 3'AG 96903643 Downstream 49bp
chr2 96903714 96903714 1 + G A rs189189691 96903711 + 96903691 96903731 41 CGAAGGAGGCATGACAATGGCACGTGACCATGGGATCACTG CGAAGGAGGCATGACAATGGCACATGACCATGGGATCACTG < 41bp 1 0.387899835709329 1 0.20208403468132 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STARD7-AS1 ENSG00000204685 ncRNA_intronic Human processed_transcript chr2:96903711 chr2:96903714 . . 0 24 hm5C_associated_SNPs_3830 0 0 0 0 1 STARD7-AS1 chr2:96903643 3'AG 96903643 Downstream 72bp
chr2 97202490 97202490 1 + T C rs55768571 97202508 + 97202488 97202528 41 TATCTCAGAGAGCGCGGGGTCCGGACAGCCGCGCGCTGAGG TACCTCAGAGAGCGCGGGGTCCGGACAGCCGCGCGCTGAGG < 41bp 1 0.776853445533157 1 0.739835739135742 experiment 0.446293108933686 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARID5A ENSG00000196843 UTR5 Human protein_coding chr2:97202508 chr2:97202490 . . 0 3 hm5C_associated_SNPs_3831 0 0 0 0 1 ARID5A chr2:97202567 5'GT 97202567 Upstream 78bp
chr2 97464936 97464936 1 + G A rs36121810 97464916 + 97464896 97464936 41 AGTACTACGCCCGCCATTACCTGTACACCCGAAATAAGCCG AGTACTACGCCCGCCATTACCTGTACACCCGAAATAAGCCA < 41bp 1 0.616429315216641 1 0.754606962203979 experiment 0.767141369566718 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CNNM4 ENSG00000158158 CDS Human protein_coding chr2:97464916 chr2:97464936 synonymous SNV . 0 41 hm5C_associated_SNPs_3832 1 0 1 0 1 CNNM4 chr2:97464963 5'GT 97464963 Upstream 28bp
chr2 97875438 97875438 1 + G A rs191164173 97875436 + 97875416 97875456 41 AGTGTCTTCTCGGAAAAAACCAGCCTTGAAGGTAATGAAAC AGTGTCTTCTCGGAAAAAACCAACCTTGAAGGTAATGAAAC < 41bp 1 0.202467443910583 1 0.253227233886719 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD36 ENSG00000135976 CDS Human protein_coding chr2:97875436 chr2:97875438 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_3833 0 0 0 0 1 ANKRD36 chr2:97875446 5'GT 97875446 Upstream 9bp
chr2 98263883 98263883 1 + A G rs75630766 98263871 + 98263851 98263891 41 GGAAGACCCTAATTTAGTCCCCTCCATCTCCAACAAGAGAA GGAAGACCCTAATTTAGTCCCCTCCATCTCCAGCAAGAGAA < 41bp 1 0.0443388574118148 1 0.0885582566261292 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COX5B ENSG00000135940 CDS Human protein_coding chr2:98263871 chr2:98263883 nonsynonymous SNV 0.294 0 33 hm5C_associated_SNPs_3834 0 0 1 0 2 COX5B chr2:98263807 3'AG 98263807 Downstream 77bp
chr2 98263883 98263883 1 + A G rs75630766 98263871 + 98263851 98263891 41 GGAAGACCCTAATTTAGTCCCCTCCATCTCCAACAAGAGAA GGAAGACCCTAATTTAGTCCCCTCCATCTCCAGCAAGAGAA < 41bp 1 0.0443388574118148 1 0.0885582566261292 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COX5B ENSG00000135940 CDS Human protein_coding chr2:98263871 chr2:98263883 nonsynonymous SNV 0.294 0 33 hm5C_associated_SNPs_3834 0 0 1 0 2 COX5B chr2:98263906 5'GT 98263906 Upstream 24bp
chr2 98263883 98263883 1 + A G rs75630766 98263872 + 98263852 98263892 41 GAAGACCCTAATTTAGTCCCCTCCATCTCCAACAAGAGAAT GAAGACCCTAATTTAGTCCCCTCCATCTCCAGCAAGAGAAT < 41bp 1 0.644201224393914 1 0.640792608261108 experiment 0.711597551212172 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COX5B ENSG00000135940 CDS Human protein_coding chr2:98263872 chr2:98263883 nonsynonymous SNV 0.294 0 32 hm5C_associated_SNPs_3835 0 0 1 0 2 COX5B chr2:98263807 3'AG 98263807 Downstream 77bp
chr2 98263883 98263883 1 + A G rs75630766 98263872 + 98263852 98263892 41 GAAGACCCTAATTTAGTCCCCTCCATCTCCAACAAGAGAAT GAAGACCCTAATTTAGTCCCCTCCATCTCCAGCAAGAGAAT < 41bp 1 0.644201224393914 1 0.640792608261108 experiment 0.711597551212172 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COX5B ENSG00000135940 CDS Human protein_coding chr2:98263872 chr2:98263883 nonsynonymous SNV 0.294 0 32 hm5C_associated_SNPs_3835 0 0 1 0 2 COX5B chr2:98263906 5'GT 98263906 Upstream 24bp
chr2 99179971 99179971 1 + C A rs61748143 99179968 + 99179948 99179988 41 TACCCGCTGCTGACCACTCTCACCGACTGCGTGGCCATGAT TACCCGCTGCTGACCACTCTCACAGACTGCGTGGCCATGAT < 41bp 1 0.595118587858852 1 0.19342052936554 experiment 0.809762824282295 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99179968 chr2:99179971 synonymous SNV . 0 24 hm5C_associated_SNPs_3838 0 0 1 0 1 INPP4A chr2:99179928 3'AG 99179928 Downstream 44bp
chr2 99772851 99772851 1 + C G rs187804121 99772840 + 99772820 99772860 41 GGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTG GGGTTCAAGCGATTCTCCTGCCTCAGCCTCCGGAGTAGCTG < 41bp 1 0.317423041841014 1 0.0595990717411041 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772840 chr2:99772851 . . 0 32 hm5C_associated_SNPs_3839 0 0 0 0 2 LIPT1 chr2:99772764 3'AG 99772764 Downstream 88bp
chr2 99772851 99772851 1 + C G rs187804121 99772840 + 99772820 99772860 41 GGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTG GGGTTCAAGCGATTCTCCTGCCTCAGCCTCCGGAGTAGCTG < 41bp 1 0.317423041841014 1 0.0595990717411041 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772840 chr2:99772851 . . 0 32 hm5C_associated_SNPs_3839 0 0 0 0 2 LIPT1 chr2:99772889 5'GT 99772889 Upstream 39bp
chr2 99772851 99772851 1 + C G rs187804121 99772841 + 99772821 99772861 41 GGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGA GGTTCAAGCGATTCTCCTGCCTCAGCCTCCGGAGTAGCTGA < 41bp 1 0.539832032111645 1 0.334933459758759 experiment 0.920335935776711 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772841 chr2:99772851 . . 0 31 hm5C_associated_SNPs_3840 0 0 0 0 2 LIPT1 chr2:99772764 3'AG 99772764 Downstream 88bp
chr2 99772851 99772851 1 + C G rs187804121 99772841 + 99772821 99772861 41 GGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGA GGTTCAAGCGATTCTCCTGCCTCAGCCTCCGGAGTAGCTGA < 41bp 1 0.539832032111645 1 0.334933459758759 experiment 0.920335935776711 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772841 chr2:99772851 . . 0 31 hm5C_associated_SNPs_3840 0 0 0 0 2 LIPT1 chr2:99772889 5'GT 99772889 Upstream 39bp
chr2 99772851 99772851 1 + C G rs187804121 99772846 + 99772826 99772866 41 AAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTA AAGCGATTCTCCTGCCTCAGCCTCCGGAGTAGCTGAGATTA < 41bp 1 0.224227174733126 1 0.135076522827148 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772846 chr2:99772851 . . 0 26 hm5C_associated_SNPs_3841 0 0 0 0 2 LIPT1 chr2:99772764 3'AG 99772764 Downstream 88bp
chr2 99772851 99772851 1 + C G rs187804121 99772846 + 99772826 99772866 41 AAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTA AAGCGATTCTCCTGCCTCAGCCTCCGGAGTAGCTGAGATTA < 41bp 1 0.224227174733126 1 0.135076522827148 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772846 chr2:99772851 . . 0 26 hm5C_associated_SNPs_3841 0 0 0 0 2 LIPT1 chr2:99772889 5'GT 99772889 Upstream 39bp
chr2 99772851 99772851 1 + C G rs187804121 99772847 + 99772827 99772867 41 AGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTAC AGCGATTCTCCTGCCTCAGCCTCCGGAGTAGCTGAGATTAC < 41bp 1 0.447211819768961 1 0.806284368038177 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772847 chr2:99772851 . . 0 25 hm5C_associated_SNPs_3842 0 0 0 0 2 LIPT1 chr2:99772764 3'AG 99772764 Downstream 88bp
chr2 99772851 99772851 1 + C G rs187804121 99772847 + 99772827 99772867 41 AGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTAC AGCGATTCTCCTGCCTCAGCCTCCGGAGTAGCTGAGATTAC < 41bp 1 0.447211819768961 1 0.806284368038177 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772847 chr2:99772851 . . 0 25 hm5C_associated_SNPs_3842 0 0 0 0 2 LIPT1 chr2:99772889 5'GT 99772889 Upstream 39bp
chr2 99772851 99772851 1 + C G rs187804121 99772849 + 99772829 99772869 41 CGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAG CGATTCTCCTGCCTCAGCCTCCGGAGTAGCTGAGATTACAG < 41bp 1 0.621720715926222 1 0.748080849647522 experiment 0.756558568147556 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772849 chr2:99772851 . . 0 23 hm5C_associated_SNPs_3843 0 0 0 0 2 LIPT1 chr2:99772764 3'AG 99772764 Downstream 88bp
chr2 99772851 99772851 1 + C G rs187804121 99772849 + 99772829 99772869 41 CGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAG CGATTCTCCTGCCTCAGCCTCCGGAGTAGCTGAGATTACAG < 41bp 1 0.621720715926222 1 0.748080849647522 experiment 0.756558568147556 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772849 chr2:99772851 . . 0 23 hm5C_associated_SNPs_3843 0 0 0 0 2 LIPT1 chr2:99772889 5'GT 99772889 Upstream 39bp
chr2 99772851 99772851 1 + C G rs187804121 99772850 + 99772830 99772870 41 GATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGG GATTCTCCTGCCTCAGCCTCCGGAGTAGCTGAGATTACAGG < 41bp 1 0.582014110010763 1 0.85805606842041 experiment 0.835971779978474 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772850 chr2:99772851 . . 0 22 hm5C_associated_SNPs_3844 0 0 0 0 2 LIPT1 chr2:99772764 3'AG 99772764 Downstream 88bp
chr2 99772851 99772851 1 + C G rs187804121 99772850 + 99772830 99772870 41 GATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGG GATTCTCCTGCCTCAGCCTCCGGAGTAGCTGAGATTACAGG < 41bp 1 0.582014110010763 1 0.85805606842041 experiment 0.835971779978474 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772850 chr2:99772851 . . 0 22 hm5C_associated_SNPs_3844 0 0 0 0 2 LIPT1 chr2:99772889 5'GT 99772889 Upstream 39bp
chr2 99772851 99772851 1 + C G rs187804121 99772867 + 99772847 99772887 41 CTCCCGAGTAGCTGAGATTACAGGCGCCTGCCACCACGCCC CTCCGGAGTAGCTGAGATTACAGGCGCCTGCCACCACGCCC < 41bp 1 0.723305791688485 1 0.683002233505249 experiment 0.55338841662303 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772867 chr2:99772851 . . 0 5 hm5C_associated_SNPs_3845 0 0 0 0 2 LIPT1 chr2:99772764 3'AG 99772764 Downstream 88bp
chr2 99772851 99772851 1 + C G rs187804121 99772867 + 99772847 99772887 41 CTCCCGAGTAGCTGAGATTACAGGCGCCTGCCACCACGCCC CTCCGGAGTAGCTGAGATTACAGGCGCCTGCCACCACGCCC < 41bp 1 0.723305791688485 1 0.683002233505249 experiment 0.55338841662303 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772867 chr2:99772851 . . 0 5 hm5C_associated_SNPs_3845 0 0 0 0 2 LIPT1 chr2:99772889 5'GT 99772889 Upstream 39bp
chr2 99772852 99772852 1 + G A rs190816941 99772840 + 99772820 99772860 41 GGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTG GGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTG < 41bp 1 0.308789578671637 1 0.0757335126399994 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772840 chr2:99772852 . . 0 33 hm5C_associated_SNPs_3846 1 0 0 0 2 LIPT1 chr2:99772764 3'AG 99772764 Downstream 89bp
chr2 99772852 99772852 1 + G A rs190816941 99772840 + 99772820 99772860 41 GGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTG GGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTG < 41bp 1 0.308789578671637 1 0.0757335126399994 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772840 chr2:99772852 . . 0 33 hm5C_associated_SNPs_3846 1 0 0 0 2 LIPT1 chr2:99772889 5'GT 99772889 Upstream 38bp
chr2 99772852 99772852 1 + G A rs190816941 99772841 + 99772821 99772861 41 GGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGA GGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGA < 41bp 1 0.554586170949139 1 0.152526527643204 experiment 0.890827658101722 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772841 chr2:99772852 . . 0 32 hm5C_associated_SNPs_3847 1 0 0 0 2 LIPT1 chr2:99772764 3'AG 99772764 Downstream 89bp
chr2 99772852 99772852 1 + G A rs190816941 99772841 + 99772821 99772861 41 GGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGA GGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGA < 41bp 1 0.554586170949139 1 0.152526527643204 experiment 0.890827658101722 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772841 chr2:99772852 . . 0 32 hm5C_associated_SNPs_3847 1 0 0 0 2 LIPT1 chr2:99772889 5'GT 99772889 Upstream 38bp
chr2 99772852 99772852 1 + G A rs190816941 99772846 + 99772826 99772866 41 AAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTA AAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTA < 41bp 1 0.195048972000492 1 0.103624671697617 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772846 chr2:99772852 . . 0 27 hm5C_associated_SNPs_3848 1 0 0 0 2 LIPT1 chr2:99772764 3'AG 99772764 Downstream 89bp
chr2 99772852 99772852 1 + G A rs190816941 99772846 + 99772826 99772866 41 AAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTA AAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTA < 41bp 1 0.195048972000492 1 0.103624671697617 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772846 chr2:99772852 . . 0 27 hm5C_associated_SNPs_3848 1 0 0 0 2 LIPT1 chr2:99772889 5'GT 99772889 Upstream 38bp
chr2 99772852 99772852 1 + G A rs190816941 99772847 + 99772827 99772867 41 AGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTAC AGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTAC < 41bp 1 0.268148740190135 1 0.303984075784683 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772847 chr2:99772852 . . 0 26 hm5C_associated_SNPs_3849 1 0 0 0 2 LIPT1 chr2:99772764 3'AG 99772764 Downstream 89bp
chr2 99772852 99772852 1 + G A rs190816941 99772847 + 99772827 99772867 41 AGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTAC AGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTAC < 41bp 1 0.268148740190135 1 0.303984075784683 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772847 chr2:99772852 . . 0 26 hm5C_associated_SNPs_3849 1 0 0 0 2 LIPT1 chr2:99772889 5'GT 99772889 Upstream 38bp
chr2 99772852 99772852 1 + G A rs190816941 99772849 + 99772829 99772869 41 CGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAG CGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTACAG < 41bp 1 0.421244089185736 1 0.296933591365814 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772849 chr2:99772852 . . 0 24 hm5C_associated_SNPs_3850 1 0 0 0 2 LIPT1 chr2:99772764 3'AG 99772764 Downstream 89bp
chr2 99772852 99772852 1 + G A rs190816941 99772849 + 99772829 99772869 41 CGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAG CGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTACAG < 41bp 1 0.421244089185736 1 0.296933591365814 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772849 chr2:99772852 . . 0 24 hm5C_associated_SNPs_3850 1 0 0 0 2 LIPT1 chr2:99772889 5'GT 99772889 Upstream 38bp
chr2 99772852 99772852 1 + G A rs190816941 99772850 + 99772830 99772870 41 GATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGG GATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTACAGG < 41bp 1 0.326903620645292 1 0.417724072933197 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772850 chr2:99772852 . . 0 23 hm5C_associated_SNPs_3851 1 0 0 0 2 LIPT1 chr2:99772764 3'AG 99772764 Downstream 89bp
chr2 99772852 99772852 1 + G A rs190816941 99772850 + 99772830 99772870 41 GATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGG GATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTACAGG < 41bp 1 0.326903620645292 1 0.417724072933197 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772850 chr2:99772852 . . 0 23 hm5C_associated_SNPs_3851 1 0 0 0 2 LIPT1 chr2:99772889 5'GT 99772889 Upstream 38bp
chr2 99772852 99772852 1 + G A rs190816941 99772851 + 99772831 99772871 41 ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGGC ATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTACAGGC < 41bp 1 0.533595690621704 1 0.502003967761993 experiment 0.932808618756592 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772851 chr2:99772852 . . 0 22 hm5C_associated_SNPs_3852 1 0 0 0 2 LIPT1 chr2:99772764 3'AG 99772764 Downstream 89bp
chr2 99772852 99772852 1 + G A rs190816941 99772851 + 99772831 99772871 41 ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGGC ATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTACAGGC < 41bp 1 0.533595690621704 1 0.502003967761993 experiment 0.932808618756592 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772851 chr2:99772852 . . 0 22 hm5C_associated_SNPs_3852 1 0 0 0 2 LIPT1 chr2:99772889 5'GT 99772889 Upstream 38bp
chr2 99772852 99772852 1 + G A rs190816941 99772867 + 99772847 99772887 41 CTCCCGAGTAGCTGAGATTACAGGCGCCTGCCACCACGCCC CTCCCAAGTAGCTGAGATTACAGGCGCCTGCCACCACGCCC < 41bp 1 0.721866013301186 1 0.644948542118073 experiment 0.556267973397629 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772867 chr2:99772852 . . 0 6 hm5C_associated_SNPs_3853 1 0 0 0 2 LIPT1 chr2:99772764 3'AG 99772764 Downstream 89bp
chr2 99772852 99772852 1 + G A rs190816941 99772867 + 99772847 99772887 41 CTCCCGAGTAGCTGAGATTACAGGCGCCTGCCACCACGCCC CTCCCAAGTAGCTGAGATTACAGGCGCCTGCCACCACGCCC < 41bp 1 0.721866013301186 1 0.644948542118073 experiment 0.556267973397629 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772867 chr2:99772852 . . 0 6 hm5C_associated_SNPs_3853 1 0 0 0 2 LIPT1 chr2:99772889 5'GT 99772889 Upstream 38bp
chr2 99772875 99772875 1 + T C rs2516828 99772867 + 99772847 99772887 41 CTCCCGAGTAGCTGAGATTACAGGCGCCTGCCACCACGCCC CTCCCGAGTAGCTGAGATTACAGGCGCCCGCCACCACGCCC < 41bp 1 0.732548118223289 1 0.713768005371094 experiment 0.534903763553422 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772867 chr2:99772875 . . 0 29 hm5C_associated_SNPs_3854 1 0 0 0 1 LIPT1 chr2:99772889 5'GT 99772889 Upstream 15bp
chr2 99802650 99802650 1 + G A rs150171730 99802640 + 99802620 99802660 41 CTACTTCCTACTTCCCACAGCCTCTAAAGAGAGCAATCACT CTACTTCCTACTTCCCACAGCCTCTAAAGAAAGCAATCACT < 41bp 1 0.0904324890256116 1 0.154283165931702 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRPL30 ENSG00000241962 CDS Human protein_coding chr2:99802640 chr2:99802650 nonsynonymous SNV . 0 31 hm5C_associated_SNPs_3855 0 0 1 1 2 MRPL30 chr2:99802640 3'AG 99802640 Downstream 11bp
chr2 99802650 99802650 1 + G A rs150171730 99802640 + 99802620 99802660 41 CTACTTCCTACTTCCCACAGCCTCTAAAGAGAGCAATCACT CTACTTCCTACTTCCCACAGCCTCTAAAGAAAGCAATCACT < 41bp 1 0.0904324890256116 1 0.154283165931702 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRPL30 ENSG00000241962 CDS Human other chr2:99802640 chr2:99802650 nonsynonymous SNV . 0 31 hm5C_associated_SNPs_3855 0 0 1 1 2 MRPL30 chr2:99802717 5'GT 99802717 Upstream 68bp
chr2 101188227 101188227 1 + C G rs143476375 101188212 + 101188192 101188232 41 TGGAAGGAGATATCAAGGCTCAGTTTATTGGTCCTCTGGTG TGGAAGGAGATATCAAGGCTCAGTTTATTGGTCCTGTGGTG < 41bp 1 0.385176660080881 1 0.480477631092072 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PDCL3 ENSG00000115539 CDS Human protein_coding chr2:101188212 chr2:101188227 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_3860 0 0 1 0 1 PDCL3 chr2:101188260 5'GT 101188260 Upstream 34bp
chr2 102486847 102486847 1 + A G rs201882230 102486859 + 102486839 102486879 41 ATGACCCCATCCAAGGAGGGCACTCTAATCGTCCGCCAGGT ATGACCCCGTCCAAGGAGGGCACTCTAATCGTCCGCCAGGT < 41bp 1 0.131123792170393 1 0.0748676955699921 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102486859 chr2:102486847 synonymous SNV . 0 9 hm5C_associated_SNPs_3869 0 0 1 0 2 MAP4K4 chr2:102486757 3'AG 102486757 Downstream 91bp
chr2 102486847 102486847 1 + A G rs201882230 102486859 + 102486839 102486879 41 ATGACCCCATCCAAGGAGGGCACTCTAATCGTCCGCCAGGT ATGACCCCGTCCAAGGAGGGCACTCTAATCGTCCGCCAGGT < 41bp 1 0.131123792170393 1 0.0748676955699921 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102486859 chr2:102486847 synonymous SNV . 0 9 hm5C_associated_SNPs_3869 0 0 1 0 2 MAP4K4 chr2:102486877 5'GT 102486877 Upstream 31bp
chr2 105959575 105959575 1 + T C rs35535744 105959573 + 105959553 105959593 41 AACAGAACCATGACTTAACGCATAGGAAAAGTCCTTCAGGC AACAGAACCATGACTTAACGCACAGGAAAAGTCCTTCAGGC < 41bp 1 0.743986712634269 1 0.448568344116211 experiment 0.512026574731462 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C2orf49 ENSG00000135974 CDS Human protein_coding chr2:105959573 chr2:105959575 synonymous SNV . 0 23 hm5C_associated_SNPs_3873 0 0 1 0 1 C2orf49 chr2:105959558 3'AG 105959558 Downstream 18bp
chr2 105959592 105959592 1 + G A rs28930676 105959573 + 105959553 105959593 41 AACAGAACCATGACTTAACGCATAGGAAAAGTCCTTCAGGC AACAGAACCATGACTTAACGCATAGGAAAAGTCCTTCAGAC < 41bp 1 0.498618670182908 1 0.500356495380402 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C2orf49 ENSG00000135974 CDS Human protein_coding chr2:105959573 chr2:105959592 nonsynonymous SNV 0.626 0 40 hm5C_associated_SNPs_3874 0 0 1 0 2 C2orf49 chr2:105959558 3'AG 105959558 Downstream 35bp
chr2 105959592 105959592 1 + G A rs28930676 105959573 + 105959553 105959593 41 AACAGAACCATGACTTAACGCATAGGAAAAGTCCTTCAGGC AACAGAACCATGACTTAACGCATAGGAAAAGTCCTTCAGAC < 41bp 1 0.498618670182908 1 0.500356495380402 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C2orf49 ENSG00000135974 CDS Human protein_coding chr2:105959573 chr2:105959592 nonsynonymous SNV 0.626 0 40 hm5C_associated_SNPs_3874 0 0 1 0 2 C2orf49 chr2:105959680 5'GT 105959680 Upstream 89bp
chr2 109347314 109347314 1 + C G rs144278795 109347326 + 109347306 109347346 41 GAAGAAAACACAGACAAAGCCGTTGAATGTTACAGGGTAAG GAAGAAAAGACAGACAAAGCCGTTGAATGTTACAGGGTAAG < 41bp 1 0.0892077162620879 1 0.212608277797699 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347326 chr2:109347314 nonsynonymous SNV 0.838 1 9 hm5C_associated_SNPs_3881 0 0 1 0 1 RANBP2 chr2:109347230 3'AG 109347230 Downstream 85bp
chr2 112939387 112939387 1 + G A rs374275003 112939404 + 112939384 112939424 41 CGGGCTCAGCACTGCAGCTGCGAGGCCGGATTCCACCTGAG CGGACTCAGCACTGCAGCTGCGAGGCCGGATTCCACCTGAG < 41bp 1 0.720683747334588 1 0.712203621864319 experiment 0.558632505330823 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBLN7 ENSG00000144152 CDS Human protein_coding chr2:112939404 chr2:112939387 nonsynonymous SNV 0.993 0 4 hm5C_associated_SNPs_3889 0 0 0 0 1 FBLN7 chr2:112939316 3'AG 112939316 Downstream 72bp
chr2 113277949 113277949 1 + T C rs62157538 113277937 + 113277917 113277957 41 TTCCAGCTCTTCGGCTTTGACTTCATGGTCGATGAGGAGCT TTCCAGCTCTTCGGCTTTGACTTCATGGTCGACGAGGAGCT < 41bp 1 0.79438931103085 1 0.770487606525421 experiment 0.4112213779383 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113277937 chr2:113277949 synonymous SNV . 0 33 hm5C_associated_SNPs_3890 0 0 1 0 2 TTL chr2:113277859 3'AG 113277859 Downstream 91bp
chr2 113277949 113277949 1 + T C rs62157538 113277937 + 113277917 113277957 41 TTCCAGCTCTTCGGCTTTGACTTCATGGTCGATGAGGAGCT TTCCAGCTCTTCGGCTTTGACTTCATGGTCGACGAGGAGCT < 41bp 1 0.79438931103085 1 0.770487606525421 experiment 0.4112213779383 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113277937 chr2:113277949 synonymous SNV . 0 33 hm5C_associated_SNPs_3890 0 0 1 0 2 TTL chr2:113278002 5'GT 113278002 Upstream 54bp
chr2 113322014 113322014 1 + A G rs114717734 113321998 + 113321978 113322018 41 TACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGT TACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCGTGGT < 41bp 1 0.167237447952419 1 0.31479686498642 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113321998 chr2:113322014 nonsynonymous SNV 0.988 0 37 hm5C_associated_SNPs_3891 0 0 1 0 2 POLR1B chr2:113321943 3'AG 113321943 Downstream 72bp
chr2 113322014 113322014 1 + A G rs114717734 113321998 + 113321978 113322018 41 TACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGT TACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCGTGGT < 41bp 1 0.167237447952419 1 0.31479686498642 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113321998 chr2:113322014 nonsynonymous SNV 0.988 0 37 hm5C_associated_SNPs_3891 0 0 1 0 2 POLR1B chr2:113322076 5'GT 113322076 Upstream 63bp
chr2 113322014 113322014 1 + A G rs114717734 113321999 + 113321979 113322019 41 ACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGTT ACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCGTGGTT < 41bp 1 0.663114503239659 1 0.213825136423111 experiment 0.673770993520681 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113321999 chr2:113322014 nonsynonymous SNV 0.988 0 36 hm5C_associated_SNPs_3892 0 0 1 0 2 POLR1B chr2:113321943 3'AG 113321943 Downstream 72bp
chr2 113322014 113322014 1 + A G rs114717734 113321999 + 113321979 113322019 41 ACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGTT ACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCGTGGTT < 41bp 1 0.663114503239659 1 0.213825136423111 experiment 0.673770993520681 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113321999 chr2:113322014 nonsynonymous SNV 0.988 0 36 hm5C_associated_SNPs_3892 0 0 1 0 2 POLR1B chr2:113322076 5'GT 113322076 Upstream 63bp
chr2 113950938 113950938 1 + C T rs192459191 113950934 + 113950914 113950954 41 CACCATTGCAATCCGGGGATCTTCCCCTCAGTAGGTAGGGA CACCATTGCAATCCGGGGATCTTCTCCTCAGTAGGTAGGGA < 41bp 1 0.0617383794059898 1 0.0946319699287415 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950934 chr2:113950938 nonsynonymous SNV 0.902 0 25 hm5C_associated_SNPs_3893 0 0 0 0 1 PSD4 chr2:113950947 5'GT 113950947 Upstream 10bp
chr2 114353068 114353068 1 + C G rs547041230 114353059 + 114353039 114353079 41 CCCCGCCACAGGATCCAGAGCAAGCACCGCCCCCTGGACGA CCCCGCCACAGGATCCAGAGCAAGCACCGGCCCCTGGACGA < 41bp 1 0.486353470229803 1 0.715253114700317 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASH2P ENSG00000146556 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:114353059 chr2:114353068 . . 0 30 hm5C_associated_SNPs_3894 0 0 1 0 1 WASH2P chr2:114353092 5'GT 114353092 Upstream 25bp
chr2 114354007 114354007 1 + T C rs563299979 114354015 + 114353995 114354035 41 AGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTG AGGTGCCTGAGACTGATGTTCCATCCTACCTGCCTGACCTG < 41bp 1 0.0392169703145041 1 0.150279998779297 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WASH2P ENSG00000146556 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:114354015 chr2:114354007 . . 0 13 hm5C_associated_SNPs_3895 0 0 1 0 1 WASH2P chr2:114353958 3'AG 114353958 Downstream 50bp
chr2 114354007 114354007 1 + T C rs563299979 114354016 + 114353996 114354036 41 GGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGC GGTGCCTGAGACTGATGTTCCATCCTACCTGCCTGACCTGC < 41bp 1 0.11734782167533 1 0.277384161949158 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WASH2P ENSG00000146556 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:114354016 chr2:114354007 . . 0 12 hm5C_associated_SNPs_3896 0 0 1 0 1 WASH2P chr2:114353958 3'AG 114353958 Downstream 50bp
chr2 118579599 118579599 1 + A G rs149582535 118579611 + 118579591 118579631 41 TCAACATCATTGTGGCCACACCAGGCCGTCTGCTGGACCAT TCAACATCGTTGTGGCCACACCAGGCCGTCTGCTGGACCAT < 41bp 1 0.596170549886525 1 0.160119384527206 experiment 0.807658900226949 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579611 chr2:118579599 nonsynonymous SNV 1.000 0 9 hm5C_associated_SNPs_3915 0 0 1 0 1 DDX18 chr2:118579637 5'GT 118579637 Upstream 39bp
chr2 118582611 118582611 1 + T C rs61732821 118582619 + 118582599 118582639 41 CTTCTTTTCATCTTGTATGTCTGTGAAATACCACTATGAGT CTTCTTTTCATCCTGTATGTCTGTGAAATACCACTATGAGT < 41bp 1 0.396937142600262 1 0.371124863624573 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118582619 chr2:118582611 synonymous SNV . 0 13 hm5C_associated_SNPs_3916 0 0 1 0 2 DDX18 chr2:118582516 3'AG 118582516 Downstream 96bp
chr2 118582611 118582611 1 + T C rs61732821 118582619 + 118582599 118582639 41 CTTCTTTTCATCTTGTATGTCTGTGAAATACCACTATGAGT CTTCTTTTCATCCTGTATGTCTGTGAAATACCACTATGAGT < 41bp 1 0.396937142600262 1 0.371124863624573 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118582619 chr2:118582611 synonymous SNV . 0 13 hm5C_associated_SNPs_3916 0 0 1 0 2 DDX18 chr2:118582677 5'GT 118582677 Upstream 67bp
chr2 119732135 119732135 1 + G A rs183062542 119732128 + 119732108 119732148 41 CCCCAAGGCCCACCGGGAGTCAAGGGAGAGGCGGGTGAGTA CCCCAAGGCCCACCGGGAGTCAAGGGAAAGGCGGGTGAGTA < 41bp 1 0.780111353503552 1 0.857444882392883 experiment 0.439777292992896 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MARCO ENSG00000019169 CDS Human protein_coding chr2:119732128 chr2:119732135 nonsynonymous SNV 0.935 2 28 hm5C_associated_SNPs_3918 0 0 0 0 2 MARCO chr2:119732097 3'AG 119732097 Downstream 39bp
chr2 119732135 119732135 1 + G A rs183062542 119732128 + 119732108 119732148 41 CCCCAAGGCCCACCGGGAGTCAAGGGAGAGGCGGGTGAGTA CCCCAAGGCCCACCGGGAGTCAAGGGAAAGGCGGGTGAGTA < 41bp 1 0.780111353503552 1 0.857444882392883 experiment 0.439777292992896 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MARCO ENSG00000019169 CDS Human protein_coding chr2:119732128 chr2:119732135 nonsynonymous SNV 0.935 2 28 hm5C_associated_SNPs_3918 0 0 0 0 2 MARCO chr2:119732141 5'GT 119732141 Upstream 7bp
chr2 120436833 120436833 1 + C G rs542243250 120436835 + 120436815 120436855 41 CGAGCGGGAGGGACCCTTCTCCGGCCTGATGCGACCCGGTA CGAGCGGGAGGGACCCTTGTCCGGCCTGATGCGACCCGGTA < 41bp 1 0.471999911330262 1 0.750213265419006 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TMEM177 ENSG00000144120 UTR5 Human protein_coding chr2:120436835 chr2:120436833 . . 0 19 hm5C_associated_SNPs_3931 0 0 1 0 1 TMEM177 chr2:120436852 5'GT 120436852 Upstream 20bp
chr2 122408255 122408255 1 + G A rs557344818 122408254 + 122408234 122408274 41 CCGCATCAGGCTCCTATGCACGCCGGTAATTTGATGTGTTG CCGCATCAGGCTCCTATGCACACCGGTAATTTGATGTGTTG < 41bp 1 0.698320841883097 1 0.0569392442703247 experiment 0.603358316233807 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NIFK-AS1 ENSG00000236859 ncRNA_exonic Human antisense chr2:122408254 chr2:122408255 . . 0 22 hm5C_associated_SNPs_3966 0 0 0 1 1 NIFK-AS1 chr2:122408258 5'GT 122408258 Upstream 4bp
chr2 122408255 122408255 1 + G A rs557344818 122408257 + 122408237 122408277 41 CATCAGGCTCCTATGCACGCCGGTAATTTGATGTGTTGAGA CATCAGGCTCCTATGCACACCGGTAATTTGATGTGTTGAGA < 41bp 1 0.554198640206582 1 0.446872711181641 experiment 0.891602719586835 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NIFK-AS1 ENSG00000236859 ncRNA_exonic Human antisense chr2:122408257 chr2:122408255 . . 0 19 hm5C_associated_SNPs_3967 0 0 0 1 1 NIFK-AS1 chr2:122408258 5'GT 122408258 Upstream 4bp
chr2 127453579 127453579 1 + A G rs115178969 127453565 + 127453545 127453585 41 GTCCTAGTCTCCCTCCTCTTCGTCATGCTGCGCTACATGTA GTCCTAGTCTCCCTCCTCTTCGTCATGCTGCGCTGCATGTA < 41bp 1 0.735686872368883 1 0.330038160085678 experiment 0.528626255262235 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control GYPC ENSG00000136732 CDS Human protein_coding chr2:127453565 chr2:127453579 nonsynonymous SNV 0.094 3 35 hm5C_associated_SNPs_3968 0 0 1 0 1 GYPC chr2:127453522 3'AG 127453522 Downstream 58bp
chr2 128184770 128184770 1 + T A rs5937 128184754 + 128184734 128184774 41 CCCCTCCTGGGTGCTGACAGCGGCCCACTGCATGGATGAGT CCCCTCCTGGGTGCTGACAGCGGCCCACTGCATGGAAGAGT < 41bp 1 0.353917174251219 1 0.457646727561951 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128184754 chr2:128184770 nonsynonymous SNV 0.652 1 37 hm5C_associated_SNPs_3969 0 0 1 0 2 PROC chr2:128184681 3'AG 128184681 Downstream 90bp
chr2 128184770 128184770 1 + T A rs5937 128184754 + 128184734 128184774 41 CCCCTCCTGGGTGCTGACAGCGGCCCACTGCATGGATGAGT CCCCTCCTGGGTGCTGACAGCGGCCCACTGCATGGAAGAGT < 41bp 1 0.353917174251219 1 0.457646727561951 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128184754 chr2:128184770 nonsynonymous SNV 0.652 1 37 hm5C_associated_SNPs_3969 0 0 1 0 2 PROC chr2:128184798 5'GT 128184798 Upstream 29bp
chr2 131103405 131103405 1 + T C rs77802032 131103398 + 131103378 131103418 41 TTTGGTCCTACTGCCTACTTCACGCTGTGCAATGTGGTCAT TTTGGTCCTACTGCCTACTTCACGCTGCGCAATGTGGTCAT < 41bp 1 0.714996591592763 1 0.126896142959595 experiment 0.570006816814474 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IMP4 ENSG00000136718 CDS Human protein_coding chr2:131103398 chr2:131103405 nonsynonymous SNV 0.947 1 28 hm5C_associated_SNPs_3984 0 0 1 0 1 IMP4 chr2:131103352 3'AG 131103352 Downstream 54bp
chr2 136537908 136537908 1 + A G rs540906675 136537910 + 136537890 136537930 41 GACTTCAGTGAGAGTAACATCGTCAGAACCCCCAAACCCTG GACTTCAGTGAGAGTAACGTCGTCAGAACCCCCAAACCCTG < 41bp 1 0.772163337923091 1 0.430613934993744 experiment 0.455673324153818 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBXN4 ENSG00000144224 CDS Human protein_coding chr2:136537910 chr2:136537908 synonymous SNV . 0 19 hm5C_associated_SNPs_3999 0 0 1 0 1 UBXN4 chr2:136537955 5'GT 136537955 Upstream 48bp
chr2 136537911 136537911 1 + G A rs62170084 136537910 + 136537890 136537930 41 GACTTCAGTGAGAGTAACATCGTCAGAACCCCCAAACCCTG GACTTCAGTGAGAGTAACATCATCAGAACCCCCAAACCCTG < 41bp 1 0.782405210396436 1 0.420642584562302 experiment 0.435189579207128 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBXN4 ENSG00000144224 CDS Human protein_coding chr2:136537910 chr2:136537911 synonymous SNV . 0 22 hm5C_associated_SNPs_4000 0 0 1 0 1 UBXN4 chr2:136537955 5'GT 136537955 Upstream 45bp
chr2 152266465 152266465 1 + G A rs75732944 152266463 + 152266443 152266483 41 GCGCCGCACGCGTGAGTAAACAGCCGGAGCTGGGAAAGTCG GCGCCGCACGCGTGAGTAAACAACCGGAGCTGGGAAAGTCG < 41bp 1 0.565215806599422 1 0.179571479558945 experiment 0.869568386801156 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RIF1 ENSG00000080345 UTR5 Human protein_coding chr2:152266463 chr2:152266465 . . 0 23 hm5C_associated_SNPs_4002 0 0 1 0 1 RIF1 chr2:152266547 5'GT 152266547 Upstream 83bp
chr2 152266473 152266473 1 + T C rs2290368 152266463 + 152266443 152266483 41 GCGCCGCACGCGTGAGTAAACAGCCGGAGCTGGGAAAGTCG GCGCCGCACGCGTGAGTAAACAGCCGGAGCCGGGAAAGTCG < 41bp 1 0.755028515811639 1 0.337906420230865 experiment 0.489942968376721 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RIF1 ENSG00000080345 CDS Human protein_coding chr2:152266463 chr2:152266473 unknown . 0 31 hm5C_associated_SNPs_4003 0 0 1 0 1 RIF1 chr2:152266547 5'GT 152266547 Upstream 75bp
chr2 157406249 157406249 1 + G A rs2116665 157406248 + 157406228 157406268 41 ACCCCCAGACAGGGAAAGTGCGTGTGAGCGGCGCACGGTGC ACCCCCAGACAGGGAAAGTGCATGTGAGCGGCGCACGGTGC < 41bp 1 0.560378929551311 1 0.412186920642853 experiment 0.879242140897379 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157406248 chr2:157406249 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_4006 0 0 0 0 1 GPD2 chr2:157406284 5'GT 157406284 Upstream 36bp
chr2 159857608 159857608 1 + A G rs78057739 159857616 + 159857596 159857636 41 TGACTGCTGGGCAGGAACGTCTCTCAGGAGAAAGAGTGGAA TGACTGCTGGGCGGGAACGTCTCTCAGGAGAAAGAGTGGAA < 41bp 1 0.160933271267614 1 0.118828743696213 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TANC1 ENSG00000115183 UTR5 Human protein_coding chr2:159857616 chr2:159857608 . . 0 13 hm5C_associated_SNPs_4008 0 0 1 0 2 TANC1 chr2:159857592 3'AG 159857592 Downstream 17bp
chr2 159857608 159857608 1 + A G rs78057739 159857616 + 159857596 159857636 41 TGACTGCTGGGCAGGAACGTCTCTCAGGAGAAAGAGTGGAA TGACTGCTGGGCGGGAACGTCTCTCAGGAGAAAGAGTGGAA < 41bp 1 0.160933271267614 1 0.118828743696213 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TANC1 ENSG00000115183 UTR5 Human protein_coding chr2:159857616 chr2:159857608 . . 0 13 hm5C_associated_SNPs_4008 0 0 1 0 2 TANC1 chr2:159857701 5'GT 159857701 Upstream 94bp
chr2 159857608 159857608 1 + A G rs78057739 159857618 + 159857598 159857638 41 ACTGCTGGGCAGGAACGTCTCTCAGGAGAAAGAGTGGAAGA ACTGCTGGGCGGGAACGTCTCTCAGGAGAAAGAGTGGAAGA < 41bp 1 0.577762772592949 1 0.240316569805145 experiment 0.844474454814102 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TANC1 ENSG00000115183 UTR5 Human protein_coding chr2:159857618 chr2:159857608 . . 0 11 hm5C_associated_SNPs_4009 0 0 1 0 2 TANC1 chr2:159857592 3'AG 159857592 Downstream 17bp
chr2 159857608 159857608 1 + A G rs78057739 159857618 + 159857598 159857638 41 ACTGCTGGGCAGGAACGTCTCTCAGGAGAAAGAGTGGAAGA ACTGCTGGGCGGGAACGTCTCTCAGGAGAAAGAGTGGAAGA < 41bp 1 0.577762772592949 1 0.240316569805145 experiment 0.844474454814102 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TANC1 ENSG00000115183 UTR5 Human protein_coding chr2:159857618 chr2:159857608 . . 0 11 hm5C_associated_SNPs_4009 0 0 1 0 2 TANC1 chr2:159857701 5'GT 159857701 Upstream 94bp
chr2 159857608 159857608 1 + A G rs78057739 159857620 + 159857600 159857640 41 TGCTGGGCAGGAACGTCTCTCAGGAGAAAGAGTGGAAGAGA TGCTGGGCGGGAACGTCTCTCAGGAGAAAGAGTGGAAGAGA < 41bp 1 0.762692557925313 1 0.942403793334961 experiment 0.474614884149374 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TANC1 ENSG00000115183 UTR5 Human protein_coding chr2:159857620 chr2:159857608 . . 0 9 hm5C_associated_SNPs_4010 0 0 1 0 2 TANC1 chr2:159857592 3'AG 159857592 Downstream 17bp
chr2 159857608 159857608 1 + A G rs78057739 159857620 + 159857600 159857640 41 TGCTGGGCAGGAACGTCTCTCAGGAGAAAGAGTGGAAGAGA TGCTGGGCGGGAACGTCTCTCAGGAGAAAGAGTGGAAGAGA < 41bp 1 0.762692557925313 1 0.942403793334961 experiment 0.474614884149374 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TANC1 ENSG00000115183 UTR5 Human protein_coding chr2:159857620 chr2:159857608 . . 0 9 hm5C_associated_SNPs_4010 0 0 1 0 2 TANC1 chr2:159857701 5'GT 159857701 Upstream 94bp
chr2 163200715 163200715 1 + G A rs534733381 163200719 + 163200699 163200739 41 TTCTCCCAGCACTGCGGACGCGACTCGAGGGTGACGCTCGC TTCTCCCAGCACTGCGAACGCGACTCGAGGGTGACGCTCGC < 41bp 1 0.720373364183182 1 0.669076681137085 experiment 0.559253271633637 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GCA ENSG00000115271 UTR5 Human protein_coding chr2:163200719 chr2:163200715 . . 0 17 hm5C_associated_SNPs_4012 0 0 1 0 1 GCA chr2:163200785 5'GT 163200785 Upstream 71bp
chr2 173366607 173366607 1 + G A rs16860616 173366597 + 173366577 173366617 41 TGATAAAGAGAGGCTTACTTCTGATGCATAGTATTGATCTA TGATAAAGAGAGGCTTACTTCTGATGCATAATATTGATCTA < 41bp 1 0.478043671196042 1 0.665200591087341 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITGA6 ENSG00000091409 CDS Human antisense chr2:173366597 chr2:173366607 synonymous SNV . 0 31 hm5C_associated_SNPs_4015 1 0 0 0 1 ITGA6 chr2:173366629 5'GT 173366629 Upstream 23bp
chr2 173451103 173451103 1 + G A rs555187654 173451098 + 173451078 173451118 41 CCAAGACCTCGTGTTGAGACCTCCCGCGCAGTGCCTCTGGT CCAAGACCTCGTGTTGAGACCTCCCACGCAGTGCCTCTGGT < 41bp 1 0.295519898018833 1 0.415821522474289 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK1 ENSG00000152256 CDS Human protein_coding chr2:173451098 chr2:173451103 nonsynonymous SNV 0.125 1 26 hm5C_associated_SNPs_4016 0 0 1 0 2 PDK1 chr2:173451006 3'AG 173451006 Downstream 98bp
chr2 173451103 173451103 1 + G A rs555187654 173451098 + 173451078 173451118 41 CCAAGACCTCGTGTTGAGACCTCCCGCGCAGTGCCTCTGGT CCAAGACCTCGTGTTGAGACCTCCCACGCAGTGCCTCTGGT < 41bp 1 0.295519898018833 1 0.415821522474289 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK1 ENSG00000152256 CDS Human protein_coding chr2:173451098 chr2:173451103 nonsynonymous SNV 0.125 1 26 hm5C_associated_SNPs_4016 0 0 1 0 2 PDK1 chr2:173451116 5'GT 173451116 Upstream 14bp
chr2 174128561 174128561 1 + A T rs188158548 174128572 + 174128552 174128592 41 AAGCAGTCCAACTTGCCATTCAGACATTATTCACCAATTCA AAGCAGTCCTACTTGCCATTCAGACATTATTCACCAATTCA < 41bp 1 0.0959294851237722 1 0.158908188343048 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAP3K20 ENSG00000091436 CDS Human protein_coding chr2:174128572 chr2:174128561 nonsynonymous SNV 0.977 2 10 hm5C_associated_SNPs_4019 0 0 0 0 1 MAP3K20 chr2:174128623 5'GT 174128623 Upstream 63bp
chr2 174224147 174224147 1 + C T rs544881819 174224138 + 174224118 174224158 41 CCAAGGCCAGATGTCACTAACGAACTGGCCGGTATTTTTCA CCAAGGCCAGATGTCACTAACGAACTGGCTGGTATTTTTCA < 41bp 1 0.299126934787534 1 0.167586773633957 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CDCA7 ENSG00000144354 CDS Human protein_coding chr2:174224138 chr2:174224147 synonymous SNV . 0 30 hm5C_associated_SNPs_4020 0 0 1 0 2 CDCA7 chr2:174224115 3'AG 174224115 Downstream 33bp
chr2 174224147 174224147 1 + C T rs544881819 174224138 + 174224118 174224158 41 CCAAGGCCAGATGTCACTAACGAACTGGCCGGTATTTTTCA CCAAGGCCAGATGTCACTAACGAACTGGCTGGTATTTTTCA < 41bp 1 0.299126934787534 1 0.167586773633957 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CDCA7 ENSG00000144354 CDS Human protein_coding chr2:174224138 chr2:174224147 synonymous SNV . 0 30 hm5C_associated_SNPs_4020 0 0 1 0 2 CDCA7 chr2:174224219 5'GT 174224219 Upstream 73bp
chr2 175268915 175268915 1 + G A rs555001328 175268914 + 175268894 175268934 41 ACATGAGAAACTATGCTAAGCGGAAAGGTTGGTGGGATGGT ACATGAGAAACTATGCTAAGCAGAAAGGTTGGTGGGATGGT < 41bp 1 0.738626930851778 1 0.154331207275391 experiment 0.522746138296445 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SCRN3 ENSG00000144306 CDS Human protein_coding chr2:175268914 chr2:175268915 nonsynonymous SNV 0.996 0 22 hm5C_associated_SNPs_4021 0 0 1 0 1 SCRN3 chr2:175268831 3'AG 175268831 Downstream 85bp
chr2 183581120 183581120 1 + G A rs143023681 183581113 + 183581093 183581133 41 GTCGGAGAGTGCGTGTGCTTCTCTCCTGCACGCGGTGCTTG GTCGGAGAGTGCGTGTGCTTCTCTCCTACACGCGGTGCTTG < 41bp 1 0.392934667354189 1 0.49871751666069 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC10 ENSG00000077232 UTR5 Human protein_coding chr2:183581113 chr2:183581120 . . 0 28 hm5C_associated_SNPs_4028 0 0 1 0 1 DNAJC10 chr2:183581210 5'GT 183581210 Upstream 91bp
chr2 187541575 187541575 1 + G A rs140775791 187541563 + 187541543 187541583 41 ACCACTAATGTCACCTGGGGCATTCAGCCAGCGCCCATGCC ACCACTAATGTCACCTGGGGCATTCAGCCAGCACCCATGCC < 41bp 1 0.0246297176329792 1 0.0299030244350433 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ITGAV ENSG00000138448 CDS Human protein_coding chr2:187541563 chr2:187541575 synonymous SNV . 0 33 hm5C_associated_SNPs_4030 0 0 1 0 1 ITGAV chr2:187541540 3'AG 187541540 Downstream 36bp
chr2 190320083 190320083 1 + C A rs6737615 190320076 + 190320056 190320096 41 GCTGGTTTCAGTGAAACTGCCAAAATCCTCAAGCCAGGAAG GCTGGTTTCAGTGAAACTGCCAAAATCATCAAGCCAGGAAG < 41bp 1 0.636203314013569 1 0.542499303817749 experiment 0.727593371972862 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR75 ENSG00000115368 CDS Human protein_coding chr2:190320076 chr2:190320083 synonymous SNV . 0 28 hm5C_associated_SNPs_4032 0 0 1 0 2 WDR75 chr2:190320046 3'AG 190320046 Downstream 38bp
chr2 190320083 190320083 1 + C A rs6737615 190320076 + 190320056 190320096 41 GCTGGTTTCAGTGAAACTGCCAAAATCCTCAAGCCAGGAAG GCTGGTTTCAGTGAAACTGCCAAAATCATCAAGCCAGGAAG < 41bp 1 0.636203314013569 1 0.542499303817749 experiment 0.727593371972862 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR75 ENSG00000115368 CDS Human protein_coding chr2:190320076 chr2:190320083 synonymous SNV . 0 28 hm5C_associated_SNPs_4032 0 0 1 0 2 WDR75 chr2:190320170 5'GT 190320170 Upstream 88bp
chr2 190323530 190323530 1 + A C rs1157910 190323529 + 190323509 190323549 41 GCATGCTAAAAACAATTTTACATGTGTAGCATGTCACCCAA GCATGCTAAAAACAATTTTACCTGTGTAGCATGTCACCCAA < 41bp 1 0.483031394531214 1 0.0753546357154846 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR75 ENSG00000115368 CDS Human protein_coding chr2:190323529 chr2:190323530 synonymous SNV . 0 22 hm5C_associated_SNPs_4033 0 0 1 0 2 WDR75 chr2:190323479 3'AG 190323479 Downstream 52bp
chr2 190323530 190323530 1 + A C rs1157910 190323529 + 190323509 190323549 41 GCATGCTAAAAACAATTTTACATGTGTAGCATGTCACCCAA GCATGCTAAAAACAATTTTACCTGTGTAGCATGTCACCCAA < 41bp 1 0.483031394531214 1 0.0753546357154846 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR75 ENSG00000115368 CDS Human protein_coding chr2:190323529 chr2:190323530 synonymous SNV . 0 22 hm5C_associated_SNPs_4033 0 0 1 0 2 WDR75 chr2:190323598 5'GT 190323598 Upstream 69bp
chr2 190323530 190323530 1 + A C rs1157910 190323543 + 190323523 190323563 41 ATTTTACATGTGTAGCATGTCACCCAACGGAAGACTGCATC ATTTTACCTGTGTAGCATGTCACCCAACGGAAGACTGCATC < 41bp 1 0.512250862985728 1 0.0618441700935364 experiment 0.975498274028545 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WDR75 ENSG00000115368 CDS Human protein_coding chr2:190323543 chr2:190323530 synonymous SNV . 0 8 hm5C_associated_SNPs_4034 0 0 1 0 2 WDR75 chr2:190323479 3'AG 190323479 Downstream 52bp
chr2 190323530 190323530 1 + A C rs1157910 190323543 + 190323523 190323563 41 ATTTTACATGTGTAGCATGTCACCCAACGGAAGACTGCATC ATTTTACCTGTGTAGCATGTCACCCAACGGAAGACTGCATC < 41bp 1 0.512250862985728 1 0.0618441700935364 experiment 0.975498274028545 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WDR75 ENSG00000115368 CDS Human protein_coding chr2:190323543 chr2:190323530 synonymous SNV . 0 8 hm5C_associated_SNPs_4034 0 0 1 0 2 WDR75 chr2:190323598 5'GT 190323598 Upstream 69bp
chr2 190327346 190327346 1 + C G rs370964637 190327327 + 190327307 190327347 41 TATTGAACATATCTCAGTCTCGCCTGCAGGAGATTTATTCT TATTGAACATATCTCAGTCTCGCCTGCAGGAGATTTATTGT < 41bp 1 0.601980979495722 1 0.122766673564911 experiment 0.796038041008557 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR75 ENSG00000115368 CDS Human protein_coding chr2:190327327 chr2:190327346 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_4035 0 0 1 0 1 WDR75 chr2:190327368 5'GT 190327368 Upstream 23bp
chr2 192141726 192141726 1 + C G rs35294642 192141711 + 192141691 192141731 41 GAACCTCTCAATGAGGAGACCTTCATCAACAACCTCAAGAA GAACCTCTCAATGAGGAGACCTTCATCAACAACCTGAAGAA < 41bp 1 0.357950031245195 1 0.167860358953476 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYO1B ENSG00000128641 CDS Human protein_coding chr2:192141711 chr2:192141726 synonymous SNV . 0 36 hm5C_associated_SNPs_4038 0 0 1 0 1 MYO1B chr2:192141756 5'GT 192141756 Upstream 31bp
chr2 192160939 192160939 1 + C T rs16833579 192160923 + 192160903 192160943 41 AAAGTGGAAGAATACAGGAACAGAAATTTTTATGAACTGAG AAAGTGGAAGAATACAGGAACAGAAATTTTTATGAATTGAG < 41bp 1 0.301091173496315 1 0.389411926269531 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYO1B ENSG00000128641 CDS Human protein_coding chr2:192160923 chr2:192160939 synonymous SNV . 0 37 hm5C_associated_SNPs_4039 0 0 1 0 1 MYO1B chr2:192160952 5'GT 192160952 Upstream 14bp
chr2 203879703 203879703 1 + A G rs540119987 203879684 + 203879664 203879704 41 GTTAGACGGCTGCCGGGCGGCGGCTGCCGCGCGGCACACAA GTTAGACGGCTGCCGGGCGGCGGCTGCCGCGCGGCACACGA < 41bp 1 0.623005969250693 1 0.827790856361389 experiment 0.753988061498615 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NBEAL1 ENSG00000144426 UTR5 Human protein_coding chr2:203879684 chr2:203879703 . . 0 40 hm5C_associated_SNPs_4054 0 0 1 0 1 NBEAL1 chr2:203879705 5'GT 203879705 Upstream 3bp
chr2 203879703 203879703 1 + A G rs540119987 203879690 + 203879670 203879710 41 CGGCTGCCGGGCGGCGGCTGCCGCGCGGCACACAATGTGAG CGGCTGCCGGGCGGCGGCTGCCGCGCGGCACACGATGTGAG < 41bp 1 0.47323416785908 1 0.47701695561409 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NBEAL1 ENSG00000144426 UTR5 Human protein_coding chr2:203879690 chr2:203879703 . . 0 34 hm5C_associated_SNPs_4055 0 0 1 0 1 NBEAL1 chr2:203879705 5'GT 203879705 Upstream 3bp
chr2 203879703 203879703 1 + A G rs540119987 203879691 + 203879671 203879711 41 GGCTGCCGGGCGGCGGCTGCCGCGCGGCACACAATGTGAGC GGCTGCCGGGCGGCGGCTGCCGCGCGGCACACGATGTGAGC < 41bp 1 0.649169521820622 1 0.843996286392212 experiment 0.701660956358757 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NBEAL1 ENSG00000144426 UTR5 Human protein_coding chr2:203879691 chr2:203879703 . . 0 33 hm5C_associated_SNPs_4056 0 0 1 0 1 NBEAL1 chr2:203879705 5'GT 203879705 Upstream 3bp
chr2 203879703 203879703 1 + A G rs540119987 203879698 + 203879678 203879718 41 GGGCGGCGGCTGCCGCGCGGCACACAATGTGAGCCCGGTGA GGGCGGCGGCTGCCGCGCGGCACACGATGTGAGCCCGGTGA < 41bp 1 0.351391190216936 1 0.288718640804291 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NBEAL1 ENSG00000144426 UTR5 Human protein_coding chr2:203879698 chr2:203879703 . . 0 26 hm5C_associated_SNPs_4057 0 0 1 0 1 NBEAL1 chr2:203879705 5'GT 203879705 Upstream 3bp
chr2 204053273 204053273 1 + G A rs114032912 204053265 + 204053245 204053285 41 TGGCTATAAACAGAGGGGACCAGCTGCAGTAGAGGCACTCA TGGCTATAAACAGAGGGGACCAGCTGCAATAGAGGCACTCA < 41bp 1 0.136190154057086 1 0.472508549690247 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204053265 chr2:204053273 nonsynonymous SNV 0.998 1 29 hm5C_associated_SNPs_4058 0 0 0 0 2 NBEAL1 chr2:204053195 3'AG 204053195 Downstream 79bp
chr2 204053273 204053273 1 + G A rs114032912 204053265 + 204053245 204053285 41 TGGCTATAAACAGAGGGGACCAGCTGCAGTAGAGGCACTCA TGGCTATAAACAGAGGGGACCAGCTGCAATAGAGGCACTCA < 41bp 1 0.136190154057086 1 0.472508549690247 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204053265 chr2:204053273 nonsynonymous SNV 0.998 1 29 hm5C_associated_SNPs_4058 0 0 0 0 2 NBEAL1 chr2:204053312 5'GT 204053312 Upstream 40bp
chr2 207024680 207024680 1 + C T rs180935095 207024663 + 207024643 207024683 41 GCGCCCACAATTTGCGCGCTCTCTTTCTGCTGCTCCCCAGC GCGCCCACAATTTGCGCGCTCTCTTTCTGCTGCTCCCTAGC < 41bp 1 0.333245194135996 1 0.0147961378097534 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EEF1B2 ENSG00000114942 UTR5 Human protein_coding chr2:207024663 chr2:207024680 . . 0 38 hm5C_associated_SNPs_4061 0 0 1 0 1 EEF1B2 chr2:207024637 3'AG 207024637 Downstream 44bp
chr2 207024680 207024680 1 + C T rs180935095 207024687 + 207024667 207024707 41 TTCTGCTGCTCCCCAGCTCTCGGATACAGCCGACACCATGG TTCTGCTGCTCCCTAGCTCTCGGATACAGCCGACACCATGG < 41bp 1 0.711425742362777 1 0.410146206617355 experiment 0.577148515274446 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EEF1B2 ENSG00000114942 UTR5 Human protein_coding chr2:207024687 chr2:207024680 . . 0 14 hm5C_associated_SNPs_4062 0 0 1 0 1 EEF1B2 chr2:207024637 3'AG 207024637 Downstream 44bp
chr2 207024680 207024680 1 + C T rs180935095 207024693 + 207024673 207024713 41 TGCTCCCCAGCTCTCGGATACAGCCGACACCATGGGTTTCG TGCTCCCTAGCTCTCGGATACAGCCGACACCATGGGTTTCG < 41bp 1 0.552358166505063 1 0.292326182126999 experiment 0.895283666989874 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EEF1B2 ENSG00000114942 UTR5 Human protein_coding chr2:207024693 chr2:207024680 . . 0 8 hm5C_associated_SNPs_4063 0 0 1 0 1 EEF1B2 chr2:207024637 3'AG 207024637 Downstream 44bp
chr2 207630338 207630338 1 + C T rs3762567 207630343 + 207630323 207630363 41 TCTCGGGGAAGCTGTCATGGCTGCTCCTGTACGTAGTCACG TCTCGGGGAAGCTGTTATGGCTGCTCCTGTACGTAGTCACG < 41bp 1 0.422647396146504 1 0.0533406734466553 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FASTKD2 ENSG00000118246 UTR5 Human protein_coding chr2:207630343 chr2:207630338 . . 0 16 hm5C_associated_SNPs_4069 1 0 1 0 1 FASTKD2 chr2:207630378 5'GT 207630378 Upstream 41bp
chr2 207630359 207630359 1 + T C rs546021759 207630343 + 207630323 207630363 41 TCTCGGGGAAGCTGTCATGGCTGCTCCTGTACGTAGTCACG TCTCGGGGAAGCTGTCATGGCTGCTCCTGTACGTAGCCACG < 41bp 1 0.443642211664875 1 0.0444039702415466 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FASTKD2 ENSG00000118246 UTR5 Human protein_coding chr2:207630343 chr2:207630359 . . 0 37 hm5C_associated_SNPs_4070 0 0 1 0 1 FASTKD2 chr2:207630378 5'GT 207630378 Upstream 20bp
chr2 207630360 207630360 1 + C T rs16838842 207630343 + 207630323 207630363 41 TCTCGGGGAAGCTGTCATGGCTGCTCCTGTACGTAGTCACG TCTCGGGGAAGCTGTCATGGCTGCTCCTGTACGTAGTTACG < 41bp 1 0.36595539285353 1 0.045082688331604 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FASTKD2 ENSG00000118246 UTR5 Human protein_coding chr2:207630343 chr2:207630360 . . 0 38 hm5C_associated_SNPs_4071 2 0 1 0 1 FASTKD2 chr2:207630378 5'GT 207630378 Upstream 19bp
chr2 209218837 209218837 1 + G A rs146239645 209218844 + 209218824 209218864 41 ATTATTCTTTGCTGGTTGGGCGAGATGATACTAGCAATGAG ATTATTCTTTGCTAGTTGGGCGAGATGATACTAGCAATGAG < 41bp 1 0.527433622167272 1 0.559588432312012 experiment 0.945132755665457 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PIKFYVE ENSG00000115020 CDS Human protein_coding chr2:209218844 chr2:209218837 synonymous SNV . 0 14 hm5C_associated_SNPs_4073 0 0 1 0 1 PIKFYVE chr2:209218883 5'GT 209218883 Upstream 47bp
chr2 211456637 211456637 1 + A G rs1047883 211456636 + 211456616 211456656 41 CATGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAA CATGGCTATGCCTTGGACAACGCCCTCCCTGCTGGCTGGAA < 41bp 1 0.262827301564102 1 0.080890417098999 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456636 chr2:211456637 nonsynonymous SNV 0.417 1 22 hm5C_associated_SNPs_4074 2 0 1 0 2 CPS1 chr2:211456555 3'AG 211456555 Downstream 83bp
chr2 211456637 211456637 1 + A G rs1047883 211456636 + 211456616 211456656 41 CATGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAA CATGGCTATGCCTTGGACAACGCCCTCCCTGCTGGCTGGAA < 41bp 1 0.262827301564102 1 0.080890417098999 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456636 chr2:211456637 nonsynonymous SNV 0.417 1 22 hm5C_associated_SNPs_4074 2 0 1 0 2 CPS1 chr2:211456693 5'GT 211456693 Upstream 57bp
chr2 211456637 211456637 1 + A G rs1047883 211456638 + 211456618 211456658 41 TGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAAAC TGGCTATGCCTTGGACAACGCCCTCCCTGCTGGCTGGAAAC < 41bp 1 0.0456061948919894 1 0.0693839490413666 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456638 chr2:211456637 nonsynonymous SNV 0.417 1 20 hm5C_associated_SNPs_4075 2 0 1 0 2 CPS1 chr2:211456555 3'AG 211456555 Downstream 83bp
chr2 211456637 211456637 1 + A G rs1047883 211456638 + 211456618 211456658 41 TGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAAAC TGGCTATGCCTTGGACAACGCCCTCCCTGCTGGCTGGAAAC < 41bp 1 0.0456061948919894 1 0.0693839490413666 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456638 chr2:211456637 nonsynonymous SNV 0.417 1 20 hm5C_associated_SNPs_4075 2 0 1 0 2 CPS1 chr2:211456693 5'GT 211456693 Upstream 57bp
chr2 211456639 211456639 1 + C T rs2229589 211456636 + 211456616 211456656 41 CATGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAA CATGGCTATGCCTTGGACAACACTCTCCCTGCTGGCTGGAA < 41bp 1 0.106238517788067 1 0.0719398856163025 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456636 chr2:211456639 synonymous SNV . 0 24 hm5C_associated_SNPs_4076 2 0 1 0 2 CPS1 chr2:211456555 3'AG 211456555 Downstream 85bp
chr2 211456639 211456639 1 + C T rs2229589 211456636 + 211456616 211456656 41 CATGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAA CATGGCTATGCCTTGGACAACACTCTCCCTGCTGGCTGGAA < 41bp 1 0.106238517788067 1 0.0719398856163025 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456636 chr2:211456639 synonymous SNV . 0 24 hm5C_associated_SNPs_4076 2 0 1 0 2 CPS1 chr2:211456693 5'GT 211456693 Upstream 55bp
chr2 211456639 211456639 1 + C T rs2229589 211456638 + 211456618 211456658 41 TGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAAAC TGGCTATGCCTTGGACAACACTCTCCCTGCTGGCTGGAAAC < 41bp 1 0.138701200637729 1 0.168387651443481 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456638 chr2:211456639 synonymous SNV . 0 22 hm5C_associated_SNPs_4077 2 0 1 0 2 CPS1 chr2:211456555 3'AG 211456555 Downstream 85bp
chr2 211456639 211456639 1 + C T rs2229589 211456638 + 211456618 211456658 41 TGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAAAC TGGCTATGCCTTGGACAACACTCTCCCTGCTGGCTGGAAAC < 41bp 1 0.138701200637729 1 0.168387651443481 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456638 chr2:211456639 synonymous SNV . 0 22 hm5C_associated_SNPs_4077 2 0 1 0 2 CPS1 chr2:211456693 5'GT 211456693 Upstream 55bp
chr2 211456646 211456646 1 + G T rs148584272 211456636 + 211456616 211456656 41 CATGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAA CATGGCTATGCCTTGGACAACACCCTCCCTTCTGGCTGGAA < 41bp 1 0.205094675355996 1 0.0900475084781647 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456636 chr2:211456646 nonsynonymous SNV 0.995 2 31 hm5C_associated_SNPs_4078 0 0 0 0 2 CPS1 chr2:211456555 3'AG 211456555 Downstream 92bp
chr2 211456646 211456646 1 + G T rs148584272 211456636 + 211456616 211456656 41 CATGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAA CATGGCTATGCCTTGGACAACACCCTCCCTTCTGGCTGGAA < 41bp 1 0.205094675355996 1 0.0900475084781647 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456636 chr2:211456646 nonsynonymous SNV 0.995 2 31 hm5C_associated_SNPs_4078 0 0 0 0 2 CPS1 chr2:211456693 5'GT 211456693 Upstream 48bp
chr2 211456646 211456646 1 + G T rs148584272 211456638 + 211456618 211456658 41 TGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAAAC TGGCTATGCCTTGGACAACACCCTCCCTTCTGGCTGGAAAC < 41bp 1 0.0465409411737591 1 0.118741124868393 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456638 chr2:211456646 nonsynonymous SNV 0.995 2 29 hm5C_associated_SNPs_4079 0 0 0 0 2 CPS1 chr2:211456555 3'AG 211456555 Downstream 92bp
chr2 211456646 211456646 1 + G T rs148584272 211456638 + 211456618 211456658 41 TGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAAAC TGGCTATGCCTTGGACAACACCCTCCCTTCTGGCTGGAAAC < 41bp 1 0.0465409411737591 1 0.118741124868393 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456638 chr2:211456646 nonsynonymous SNV 0.995 2 29 hm5C_associated_SNPs_4079 0 0 0 0 2 CPS1 chr2:211456693 5'GT 211456693 Upstream 48bp
chr2 211465359 211465359 1 + A T rs144230667 211465360 + 211465340 211465380 41 AGTTGAGTCCATTATGGCTACGGAAGACAGGCAGCTGTTTT AGTTGAGTCCATTATGGCTTCGGAAGACAGGCAGCTGTTTT < 41bp 1 0.591203858231382 1 0.830919444561005 experiment 0.817592283537235 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPS1 ENSG00000021826 CDS Human protein_coding chr2:211465360 chr2:211465359 nonsynonymous SNV 0.996 2 20 hm5C_associated_SNPs_4080 0 0 1 0 2 CPS1 chr2:211465279 3'AG 211465279 Downstream 81bp
chr2 211465359 211465359 1 + A T rs144230667 211465360 + 211465340 211465380 41 AGTTGAGTCCATTATGGCTACGGAAGACAGGCAGCTGTTTT AGTTGAGTCCATTATGGCTTCGGAAGACAGGCAGCTGTTTT < 41bp 1 0.591203858231382 1 0.830919444561005 experiment 0.817592283537235 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPS1 ENSG00000021826 CDS Human protein_coding chr2:211465360 chr2:211465359 nonsynonymous SNV 0.996 2 20 hm5C_associated_SNPs_4080 0 0 1 0 2 CPS1 chr2:211465436 5'GT 211465436 Upstream 78bp
chr2 217012901 217012901 1 + A G rs207906 217012900 + 217012880 217012920 41 TCCTCCCGCTGAGGTGACAACAAAAAGTCAGATTCCTCTCT TCCTCCCGCTGAGGTGACAACGAAAAGTCAGATTCCTCTCT < 41bp 1 0.672949677569359 1 0.280017793178558 experiment 0.654100644861282 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XRCC5 ENSG00000079246 CDS Human protein_coding chr2:217012900 chr2:217012901 synonymous SNV . 0 22 hm5C_associated_SNPs_4082 0 0 1 0 1 XRCC5 chr2:217012999 5'GT 217012999 Upstream 99bp
chr2 217363567 217363567 1 + C G rs200229085 217363561 + 217363541 217363581 41 ACCGCGCCTGCGCACCGCGTCTCTTCCTTTCTGGGCTCGGA ACCGCGCCTGCGCACCGCGTCTCTTCGTTTCTGGGCTCGGA < 41bp 1 0.324277790991138 1 0.0451550781726837 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL37A ENSG00000197756 UTR5 Human protein_coding chr2:217363561 chr2:217363567 . . 0 27 hm5C_associated_SNPs_4085 0 0 1 0 1 RPL37A chr2:217363600 5'GT 217363600 Upstream 34bp
chr2 217363567 217363567 1 + C G rs200229085 217363563 + 217363543 217363583 41 CGCGCCTGCGCACCGCGTCTCTTCCTTTCTGGGCTCGGACC CGCGCCTGCGCACCGCGTCTCTTCGTTTCTGGGCTCGGACC < 41bp 1 0.59177643028682 1 0.122486263513565 experiment 0.81644713942636 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL37A ENSG00000197756 UTR5 Human protein_coding chr2:217363563 chr2:217363567 . . 0 25 hm5C_associated_SNPs_4086 0 0 1 0 1 RPL37A chr2:217363600 5'GT 217363600 Upstream 34bp
chr2 217364764 217364764 1 + G T rs2272243 217364748 + 217364728 217364768 41 AGTGGCTGGCGGTGCCTGGACGTACAAGTGAGTCTAGTTCC AGTGGCTGGCGGTGCCTGGACGTACAAGTGAGTCTATTTCC < 41bp 1 0.351880644705342 1 0.315347671508789 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 intronic Human protein_coding chr2:217364748 chr2:217364764 . . 0 37 hm5C_associated_SNPs_4087 0 0 1 0 1 RPL37A chr2:217364672 3'AG 217364672 Downstream 93bp
chr2 219269089 219269089 1 + C G rs199987970 219269106 + 219269086 219269126 41 GAGCAACTCAGCCGTGTGGACGACGTGTACTCAGTGCTCAG GAGGAACTCAGCCGTGTGGACGACGTGTACTCAGTGCTCAG < 41bp 1 0.6044703322109 1 0.161958575248718 experiment 0.7910593355782 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219269106 chr2:219269089 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_4092 0 0 1 0 1 CTDSP1 chr2:219269020 3'AG 219269020 Downstream 70bp
chr2 219452034 219452034 1 + C T rs181874537 219452042 + 219452022 219452062 41 TTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGAT TTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGAT < 41bp 1 0.706662931287264 1 0.60889333486557 experiment 0.586674137425471 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNOT9 ENSG00000144580 CDS Human protein_coding chr2:219452042 chr2:219452034 nonsynonymous SNV 0.001 0 13 hm5C_associated_SNPs_4094 0 0 0 0 2 CNOT9 chr2:219452028 3'AG 219452028 Downstream 7bp
chr2 219452034 219452034 1 + C T rs181874537 219452042 + 219452022 219452062 41 TTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGAT TTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGAT < 41bp 1 0.706662931287264 1 0.60889333486557 experiment 0.586674137425471 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNOT9 ENSG00000144580 CDS Human protein_coding chr2:219452042 chr2:219452034 nonsynonymous SNV 0.001 0 13 hm5C_associated_SNPs_4094 0 0 0 0 2 CNOT9 chr2:219452123 5'GT 219452123 Upstream 90bp
chr2 219452034 219452034 1 + C T rs181874537 219452044 + 219452024 219452064 41 TTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGATCT TTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGATCT < 41bp 1 0.290944563361927 1 0.260624259710312 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNOT9 ENSG00000144580 CDS Human protein_coding chr2:219452044 chr2:219452034 nonsynonymous SNV 0.001 0 11 hm5C_associated_SNPs_4095 0 0 0 0 2 CNOT9 chr2:219452028 3'AG 219452028 Downstream 7bp
chr2 219452034 219452034 1 + C T rs181874537 219452044 + 219452024 219452064 41 TTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGATCT TTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGATCT < 41bp 1 0.290944563361927 1 0.260624259710312 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNOT9 ENSG00000144580 CDS Human protein_coding chr2:219452044 chr2:219452034 nonsynonymous SNV 0.001 0 11 hm5C_associated_SNPs_4095 0 0 0 0 2 CNOT9 chr2:219452123 5'GT 219452123 Upstream 90bp
chr2 219452034 219452034 1 + C T rs181874537 219452045 + 219452025 219452065 41 TAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGATCTT TAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGATCTT < 41bp 1 0.538127198314524 1 0.646247625350952 experiment 0.923745603370953 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNOT9 ENSG00000144580 CDS Human protein_coding chr2:219452045 chr2:219452034 nonsynonymous SNV 0.001 0 10 hm5C_associated_SNPs_4096 0 0 0 0 2 CNOT9 chr2:219452028 3'AG 219452028 Downstream 7bp
chr2 219452034 219452034 1 + C T rs181874537 219452045 + 219452025 219452065 41 TAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGATCTT TAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGATCTT < 41bp 1 0.538127198314524 1 0.646247625350952 experiment 0.923745603370953 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNOT9 ENSG00000144580 CDS Human protein_coding chr2:219452045 chr2:219452034 nonsynonymous SNV 0.001 0 10 hm5C_associated_SNPs_4096 0 0 0 0 2 CNOT9 chr2:219452123 5'GT 219452123 Upstream 90bp
chr2 219452034 219452034 1 + C T rs181874537 219452053 + 219452033 219452073 41 ACGGGGTTTCACCATGTTGGCCAGGCTGATCTTGAACTCCC ATGGGGTTTCACCATGTTGGCCAGGCTGATCTTGAACTCCC < 41bp 1 0.452838833868941 1 0.268670380115509 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNOT9 ENSG00000144580 CDS Human protein_coding chr2:219452053 chr2:219452034 nonsynonymous SNV 0.001 0 2 hm5C_associated_SNPs_4097 0 0 0 0 2 CNOT9 chr2:219452028 3'AG 219452028 Downstream 7bp
chr2 219452034 219452034 1 + C T rs181874537 219452053 + 219452033 219452073 41 ACGGGGTTTCACCATGTTGGCCAGGCTGATCTTGAACTCCC ATGGGGTTTCACCATGTTGGCCAGGCTGATCTTGAACTCCC < 41bp 1 0.452838833868941 1 0.268670380115509 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNOT9 ENSG00000144580 CDS Human protein_coding chr2:219452053 chr2:219452034 nonsynonymous SNV 0.001 0 2 hm5C_associated_SNPs_4097 0 0 0 0 2 CNOT9 chr2:219452123 5'GT 219452123 Upstream 90bp
chr2 219452034 219452034 1 + C T rs181874537 219452054 + 219452034 219452074 41 CGGGGTTTCACCATGTTGGCCAGGCTGATCTTGAACTCCCG TGGGGTTTCACCATGTTGGCCAGGCTGATCTTGAACTCCCG < 41bp 1 0.40147603465856 1 0.122684866189957 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNOT9 ENSG00000144580 CDS Human protein_coding chr2:219452054 chr2:219452034 nonsynonymous SNV 0.001 0 1 hm5C_associated_SNPs_4098 0 0 0 0 2 CNOT9 chr2:219452028 3'AG 219452028 Downstream 7bp
chr2 219452034 219452034 1 + C T rs181874537 219452054 + 219452034 219452074 41 CGGGGTTTCACCATGTTGGCCAGGCTGATCTTGAACTCCCG TGGGGTTTCACCATGTTGGCCAGGCTGATCTTGAACTCCCG < 41bp 1 0.40147603465856 1 0.122684866189957 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNOT9 ENSG00000144580 CDS Human protein_coding chr2:219452054 chr2:219452034 nonsynonymous SNV 0.001 0 1 hm5C_associated_SNPs_4098 0 0 0 0 2 CNOT9 chr2:219452123 5'GT 219452123 Upstream 90bp
chr2 219525067 219525067 1 + A G rs77487601 219525060 + 219525040 219525080 41 GGAGCCAGCCATTGAAGGTGCTGGAGCAGAGAGAGATATGG GGAGCCAGCCATTGAAGGTGCTGGAGCGGAGAGAGATATGG < 41bp 1 0.705106192531004 1 0.482317000627518 experiment 0.589787614937992 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control BCS1L ENSG00000074582 UTR5 Human protein_coding chr2:219525060 chr2:219525067 . . 0 28 hm5C_associated_SNPs_4099 0 0 1 0 1 BCS1L chr2:219525144 5'GT 219525144 Upstream 78bp
chr2 219677673 219677673 1 + G A rs190012697 219677655 + 219677635 219677675 41 TTGCTTTCACAGGGAAGAAGCTGATTGATGAGAAGCTCGAA TTGCTTTCACAGGGAAGAAGCTGATTGATGAGAAGCTCAAA < 41bp 1 0.267359437553986 1 0.141534835100174 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219677655 chr2:219677673 nonsynonymous SNV 0.043 0 39 hm5C_associated_SNPs_4100 1 0 1 0 1 CYP27A1 chr2:219677647 3'AG 219677647 Downstream 27bp
chr2 220097286 220097286 1 + G A rs200506719 220097293 + 220097273 220097313 41 GACACTGGATCGGGAGAGGGCTACATTTGAGAAGTTGAGCC GACACTGGATCGGAAGAGGGCTACATTTGAGAAGTTGAGCC < 41bp 1 0.715836792494239 1 0.692811131477356 experiment 0.568326415011522 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220097293 chr2:220097286 nonsynonymous SNV 0.802 0 14 hm5C_associated_SNPs_4101 0 0 1 0 1 ANKZF1 chr2:220097212 3'AG 220097212 Downstream 75bp
chr2 220346378 220346378 1 + G A rs190001816 220346365 + 220346345 220346385 41 CTCATTCATTCACAGGAGACCTACCGCAGAAGAGACCCTAG CTCATTCATTCACAGGAGACCTACCGCAGAAGAAACCCTAG < 41bp 1 0.0259507619591186 1 0.11843404173851 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220346365 chr2:220346378 synonymous SNV . 0 34 hm5C_associated_SNPs_4111 0 0 0 0 2 SPEG chr2:220346360 3'AG 220346360 Downstream 19bp
chr2 220346378 220346378 1 + G A rs190001816 220346365 + 220346345 220346385 41 CTCATTCATTCACAGGAGACCTACCGCAGAAGAGACCCTAG CTCATTCATTCACAGGAGACCTACCGCAGAAGAAACCCTAG < 41bp 1 0.0259507619591186 1 0.11843404173851 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220346365 chr2:220346378 synonymous SNV . 0 34 hm5C_associated_SNPs_4111 0 0 0 0 2 SPEG chr2:220346402 5'GT 220346402 Upstream 25bp
chr2 220355623 220355623 1 + C T rs200044898 220355629 + 220355609 220355649 41 AGTGCCCAGCCCTACAACCCCCAGGCCCTTAGGCCCCTTGG AGTGCCCAGCCCTATAACCCCCAGGCCCTTAGGCCCCTTGG < 41bp 1 0.175194527504928 1 0.670332372188568 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220355629 chr2:220355623 synonymous SNV . 0 15 hm5C_associated_SNPs_4113 0 0 0 0 1 SPEG chr2:220355678 5'GT 220355678 Upstream 56bp
chr2 220355623 220355623 1 + C T rs200044898 220355636 + 220355616 220355656 41 AGCCCTACAACCCCCAGGCCCTTAGGCCCCTTGGCCACCGC AGCCCTATAACCCCCAGGCCCTTAGGCCCCTTGGCCACCGC < 41bp 1 0.115403070605739 1 0.0661021769046783 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220355636 chr2:220355623 synonymous SNV . 0 8 hm5C_associated_SNPs_4114 0 0 0 0 1 SPEG chr2:220355678 5'GT 220355678 Upstream 56bp
chr2 220355623 220355623 1 + C T rs200044898 220355643 + 220355623 220355663 41 CAACCCCCAGGCCCTTAGGCCCCTTGGCCACCGCACGGGCA TAACCCCCAGGCCCTTAGGCCCCTTGGCCACCGCACGGGCA < 41bp 1 0.022110327608996 1 0.0495802462100983 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220355643 chr2:220355623 synonymous SNV . 0 1 hm5C_associated_SNPs_4115 0 0 0 0 1 SPEG chr2:220355678 5'GT 220355678 Upstream 56bp
chr2 220505237 220505237 1 + C T rs138115643 220505231 + 220505211 220505251 41 ATCTTCCTGTACATGGGGGTCACGTCCCTGTCTGGTATCCA ATCTTCCTGTACATGGGGGTCACGTCTCTGTCTGGTATCCA < 41bp 1 0.316056986111683 1 0.0352777540683746 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220505231 chr2:220505237 synonymous SNV . 0 27 hm5C_associated_SNPs_4118 0 0 0 0 2 SLC4A3 chr2:220505152 3'AG 220505152 Downstream 86bp
chr2 220505237 220505237 1 + C T rs138115643 220505231 + 220505211 220505251 41 ATCTTCCTGTACATGGGGGTCACGTCCCTGTCTGGTATCCA ATCTTCCTGTACATGGGGGTCACGTCTCTGTCTGGTATCCA < 41bp 1 0.316056986111683 1 0.0352777540683746 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220505231 chr2:220505237 synonymous SNV . 0 27 hm5C_associated_SNPs_4118 0 0 0 0 2 SLC4A3 chr2:220505321 5'GT 220505321 Upstream 85bp
chr2 220505265 220505265 1 + T C rs684428 220505284 + 220505264 220505304 41 TTTGTTGCTCATCCTCATGCCGGCAAAACACCATCCTGAGC TCTGTTGCTCATCCTCATGCCGGCAAAACACCATCCTGAGC < 41bp 1 0.693373352208376 1 0.458232223987579 experiment 0.613253295583248 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220505284 chr2:220505265 synonymous SNV . 0 2 hm5C_associated_SNPs_4119 0 0 0 0 1 SLC4A3 chr2:220505321 5'GT 220505321 Upstream 57bp
chr2 220505285 220505285 1 + G A rs181107871 220505284 + 220505264 220505304 41 TTTGTTGCTCATCCTCATGCCGGCAAAACACCATCCTGAGC TTTGTTGCTCATCCTCATGCCAGCAAAACACCATCCTGAGC < 41bp 1 0.631316497759878 1 0.230642229318619 experiment 0.737367004480243 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220505284 chr2:220505285 synonymous SNV . 0 22 hm5C_associated_SNPs_4120 0 0 0 0 1 SLC4A3 chr2:220505321 5'GT 220505321 Upstream 37bp
chr2 227704146 227704146 1 + T A rs957630 227704165 + 227704145 227704185 41 TTACCTGTAAAACTCAGGAGCCGAGAAGCTTTAAGAACAGT TAACCTGTAAAACTCAGGAGCCGAGAAGCTTTAAGAACAGT < 41bp 1 0.117794035932293 1 0.357975423336029 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RHBDD1 ENSG00000144468 UTR5 Human protein_coding chr2:227704165 chr2:227704146 . . 0 2 hm5C_associated_SNPs_4124 0 0 1 0 1 RHBDD1 chr2:227704125 3'AG 227704125 Downstream 22bp
chr2 228148541 228148541 1 + C T rs75519005 228148543 + 228148523 228148563 41 CATTGGCCCTCCAGGGCCCCCTGGGAACCCAGGCACACCAG CATTGGCCCTCCAGGGCCTCCTGGGAACCCAGGCACACCAG < 41bp 1 0.640236684285319 1 0.630598127841949 experiment 0.719526631429363 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228148543 chr2:228148541 synonymous SNV . 0 19 hm5C_associated_SNPs_4126 2 0 0 0 2 COL4A3 chr2:228148483 3'AG 228148483 Downstream 59bp
chr2 228148541 228148541 1 + C T rs75519005 228148543 + 228148523 228148563 41 CATTGGCCCTCCAGGGCCCCCTGGGAACCCAGGCACACCAG CATTGGCCCTCCAGGGCCTCCTGGGAACCCAGGCACACCAG < 41bp 1 0.640236684285319 1 0.630598127841949 experiment 0.719526631429363 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228148543 chr2:228148541 synonymous SNV . 0 19 hm5C_associated_SNPs_4126 2 0 0 0 2 COL4A3 chr2:228148572 5'GT 228148572 Upstream 32bp
chr2 228162537 228162537 1 + C A rs528758931 228162527 + 228162507 228162547 41 GTCTGCCCGGTGCAATTATCCCTGGCCAGACAGGAAATCGT GTCTGCCCGGTGCAATTATCCCTGGCCAGAAAGGAAATCGT < 41bp 1 0.160264551354384 1 0.168989151716232 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228162527 chr2:228162537 nonsynonymous SNV 0.560 1 31 hm5C_associated_SNPs_4127 0 0 0 0 1 COL4A3 chr2:228162575 5'GT 228162575 Upstream 39bp
chr2 228190065 228190065 1 + A G rs7588961 228190066 + 228190046 228190086 41 TCCGTGCTCTCAGCCAACCACCTCTGAGAGCGCCCACTCGA TCCGTGCTCTCAGCCAACCGCCTCTGAGAGCGCCCACTCGA < 41bp 1 0.404556362882206 1 0.0491840243339539 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MFF ENSG00000168958 UTR5 Human protein_coding chr2:228190066 chr2:228190065 . . 0 20 hm5C_associated_SNPs_4128 0 0 1 0 1 MFF chr2:228190143 5'GT 228190143 Upstream 79bp
chr2 228190065 228190065 1 + A G rs7588961 228190067 + 228190047 228190087 41 CCGTGCTCTCAGCCAACCACCTCTGAGAGCGCCCACTCGAG CCGTGCTCTCAGCCAACCGCCTCTGAGAGCGCCCACTCGAG < 41bp 1 0.612515354152952 1 0.158970564603806 experiment 0.774969291694097 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MFF ENSG00000168958 UTR5 Human protein_coding chr2:228190067 chr2:228190065 . . 0 19 hm5C_associated_SNPs_4129 0 0 1 0 1 MFF chr2:228190143 5'GT 228190143 Upstream 79bp
chr2 228398422 228398422 1 + A G rs13015491 228398425 + 228398405 228398445 41 GCTGGTTTACAGACTGCAGACAAATATGCAGCACTTGCTAA GCTGGTTTACAGACTGCGGACAAATATGCAGCACTTGCTAA < 41bp 1 0.340353464123316 1 0.11762672662735 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGFG1 ENSG00000173744 CDS Human protein_coding chr2:228398425 chr2:228398422 synonymous SNV . 0 18 hm5C_associated_SNPs_4130 0 0 1 0 1 AGFG1 chr2:228398474 5'GT 228398474 Upstream 53bp
chr2 231326081 231326081 1 + T C rs35506327 231326090 + 231326070 231326110 41 CAAAAGTTGAGTGCCAAGCCCAAGCAAGAACTCATCATAAC CAAAAGTTGAGCGCCAAGCCCAAGCAAGAACTCATCATAAC < 41bp 1 0.369029619301528 1 0.502208292484283 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SP100 ENSG00000067066 CDS Human protein_coding chr2:231326090 chr2:231326081 nonsynonymous SNV 0.000 0 12 hm5C_associated_SNPs_4140 0 0 0 0 1 SP100 chr2:231326129 5'GT 231326129 Upstream 49bp
chr2 231327220 231327220 1 + G A rs75519436 231327230 + 231327210 231327250 41 TCTCAGCACCGAGAAGTGAGCCTGGTAAGGAAGTTTGGGAG TCTCAGCACCAAGAAGTGAGCCTGGTAAGGAAGTTTGGGAG < 41bp 1 0.417242375729011 1 0.323936462402344 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SP100 ENSG00000067066 CDS Human protein_coding chr2:231327230 chr2:231327220 synonymous SNV . 0 11 hm5C_associated_SNPs_4141 0 0 1 0 2 SP100 chr2:231327150 3'AG 231327150 Downstream 71bp
chr2 231327220 231327220 1 + G A rs75519436 231327230 + 231327210 231327250 41 TCTCAGCACCGAGAAGTGAGCCTGGTAAGGAAGTTTGGGAG TCTCAGCACCAAGAAGTGAGCCTGGTAAGGAAGTTTGGGAG < 41bp 1 0.417242375729011 1 0.323936462402344 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SP100 ENSG00000067066 CDS Human protein_coding chr2:231327230 chr2:231327220 synonymous SNV . 0 11 hm5C_associated_SNPs_4141 0 0 1 0 2 SP100 chr2:231327233 5'GT 231327233 Upstream 14bp
chr2 232225561 232225561 1 + C T rs144639126 232225566 + 232225546 232225586 41 GCCAGCCAAGGGAGGCGCCCCAGGACCCAGGCAATGGAGTG GCCAGCCAAGGGAGGTGCCCCAGGACCCAGGCAATGGAGTG < 41bp 1 0.787324803344374 1 0.654674828052521 experiment 0.425350393311252 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARMC9 ENSG00000135931;ENSG00000263641 intergenic Human other chr2:232225566 chr2:232225561 . 0.035 0 16 hm5C_associated_SNPs_4144 0 0 0 0 2 ARMC9 chr2:232225466 3'AG 232225466 Downstream 96bp
chr2 232225561 232225561 1 + C T rs144639126 232225566 + 232225546 232225586 41 GCCAGCCAAGGGAGGCGCCCCAGGACCCAGGCAATGGAGTG GCCAGCCAAGGGAGGTGCCCCAGGACCCAGGCAATGGAGTG < 41bp 1 0.787324803344374 1 0.654674828052521 experiment 0.425350393311252 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARMC9 ENSG00000135931;ENSG00000263641 intergenic Human other chr2:232225566 chr2:232225561 . 0.035 0 16 hm5C_associated_SNPs_4144 0 0 0 0 2 ARMC9 chr2:232225594 5'GT 232225594 Upstream 34bp
chr2 233388488 233388488 1 + C G rs540536012 233388486 + 233388466 233388506 41 GTCCCGCCCGCAGCAGCCTCCTCCAGCCGCGAGCCCAGCTG GTCCCGCCCGCAGCAGCCTCCTGCAGCCGCGAGCCCAGCTG < 41bp 1 0.763635855706398 1 0.767494320869446 experiment 0.472728288587205 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PRSS56 ENSG00000237412 CDS Human protein_coding chr2:233388486 chr2:233388488 nonsynonymous SNV 0.817 0 23 hm5C_associated_SNPs_4146 0 0 0 0 1 PRSS56 chr2:233388482 3'AG 233388482 Downstream 7bp
chr2 233671277 233671277 1 + G A rs114498122 233671297 + 233671277 233671317 41 GTGTGATGAAAGCTTCCAACCTCTTGGCGATATCATGAAAA ATGTGATGAAAGCTTCCAACCTCTTGGCGATATCATGAAAA < 41bp 1 0.203210254306637 1 0.211855113506317 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671297 chr2:233671277 synonymous SNV . 0 1 hm5C_associated_SNPs_4147 0 0 1 0 2 GIGYF2 chr2:233671201 3'AG 233671201 Downstream 77bp
chr2 233671277 233671277 1 + G A rs114498122 233671297 + 233671277 233671317 41 GTGTGATGAAAGCTTCCAACCTCTTGGCGATATCATGAAAA ATGTGATGAAAGCTTCCAACCTCTTGGCGATATCATGAAAA < 41bp 1 0.203210254306637 1 0.211855113506317 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671297 chr2:233671277 synonymous SNV . 0 1 hm5C_associated_SNPs_4147 0 0 1 0 2 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 91bp
chr2 233671292 233671292 1 + C T rs114460769 233671297 + 233671277 233671317 41 GTGTGATGAAAGCTTCCAACCTCTTGGCGATATCATGAAAA GTGTGATGAAAGCTTTCAACCTCTTGGCGATATCATGAAAA < 41bp 1 0.225664464369257 1 0.165565520524979 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671297 chr2:233671292 synonymous SNV . 0 16 hm5C_associated_SNPs_4148 0 0 1 0 2 GIGYF2 chr2:233671201 3'AG 233671201 Downstream 92bp
chr2 233671292 233671292 1 + C T rs114460769 233671297 + 233671277 233671317 41 GTGTGATGAAAGCTTCCAACCTCTTGGCGATATCATGAAAA GTGTGATGAAAGCTTTCAACCTCTTGGCGATATCATGAAAA < 41bp 1 0.225664464369257 1 0.165565520524979 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671297 chr2:233671292 synonymous SNV . 0 16 hm5C_associated_SNPs_4148 0 0 1 0 2 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 76bp
chr2 233704576 233704576 1 + G A rs149682624 233704582 + 233704562 233704602 41 CCTTCTTCTTCAACGTGGGGCCAGCAGTCCAATACAACAGC CCTTCTTCTTCAACATGGGGCCAGCAGTCCAATACAACAGC < 41bp 1 0.0536108142472717 1 0.169875681400299 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233704582 chr2:233704576 synonymous SNV . 0 15 hm5C_associated_SNPs_4149 0 0 1 0 1 GIGYF2 chr2:233704559 3'AG 233704559 Downstream 18bp
chr2 233704576 233704576 1 + G A rs149682624 233704586 + 233704566 233704606 41 CTTCTTCAACGTGGGGCCAGCAGTCCAATACAACAGCATGT CTTCTTCAACATGGGGCCAGCAGTCCAATACAACAGCATGT < 41bp 1 0.0930985173840776 1 0.646778225898743 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233704586 chr2:233704576 synonymous SNV . 0 11 hm5C_associated_SNPs_4150 0 0 1 0 1 GIGYF2 chr2:233704559 3'AG 233704559 Downstream 18bp
chr2 236403462 236403462 1 + C T rs8178993 236403477 + 236403457 236403497 41 CAGAACCAGATCCGGGAGCACGTCATCGCCATCGAAGGTGA CAGAATCAGATCCGGGAGCACGTCATCGCCATCGAAGGTGA < 41bp 1 0.401429480365167 1 0.225171446800232 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236403477 chr2:236403462 synonymous SNV . 0 6 hm5C_associated_SNPs_4155 0 0 1 0 1 AGAP1 chr2:236403493 5'GT 236403493 Upstream 32bp
chr2 236817444 236817444 1 + A G rs145394669 236817455 + 236817435 236817475 41 GAAAGTCCCAGGGAAGAGGCCACCCCGAGCCACGTCAGCCT GAAAGTCCCGGGGAAGAGGCCACCCCGAGCCACGTCAGCCT < 41bp 1 0.137539967116522 1 0.0724477767944336 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236817455 chr2:236817444 synonymous SNV . 0 10 hm5C_associated_SNPs_4156 0 0 1 0 1 AGAP1 chr2:236817382 3'AG 236817382 Downstream 63bp
chr2 236817468 236817468 1 + G A rs189935338 236817455 + 236817435 236817475 41 GAAAGTCCCAGGGAAGAGGCCACCCCGAGCCACGTCAGCCT GAAAGTCCCAGGGAAGAGGCCACCCCGAGCCACATCAGCCT < 41bp 1 0.0959886837631336 1 0.0438587665557861 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236817455 chr2:236817468 synonymous SNV . 0 34 hm5C_associated_SNPs_4157 0 0 1 0 2 AGAP1 chr2:236817382 3'AG 236817382 Downstream 87bp
chr2 236817468 236817468 1 + G A rs189935338 236817455 + 236817435 236817475 41 GAAAGTCCCAGGGAAGAGGCCACCCCGAGCCACGTCAGCCT GAAAGTCCCAGGGAAGAGGCCACCCCGAGCCACATCAGCCT < 41bp 1 0.0959886837631336 1 0.0438587665557861 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236817455 chr2:236817468 synonymous SNV . 0 34 hm5C_associated_SNPs_4157 0 0 1 0 2 AGAP1 chr2:236817550 5'GT 236817550 Upstream 83bp
chr2 238005476 238005476 1 + C G rs34344319 238005475 + 238005455 238005495 41 TTGAATTTAGTTGCAGGGGCCCTGGATGTTTCCTTTAACAA TTGAATTTAGTTGCAGGGGCCGTGGATGTTTCCTTTAACAA < 41bp 1 0.294277294305964 1 0.412275493144989 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COPS8 ENSG00000198612 CDS Human protein_coding chr2:238005475 chr2:238005476 nonsynonymous SNV 0.745 0 22 hm5C_associated_SNPs_4158 0 0 1 0 2 COPS8 chr2:238005465 3'AG 238005465 Downstream 12bp
chr2 238005476 238005476 1 + C G rs34344319 238005475 + 238005455 238005495 41 TTGAATTTAGTTGCAGGGGCCCTGGATGTTTCCTTTAACAA TTGAATTTAGTTGCAGGGGCCGTGGATGTTTCCTTTAACAA < 41bp 1 0.294277294305964 1 0.412275493144989 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COPS8 ENSG00000198612 CDS Human protein_coding chr2:238005475 chr2:238005476 nonsynonymous SNV 0.745 0 22 hm5C_associated_SNPs_4158 0 0 1 0 2 COPS8 chr2:238005512 5'GT 238005512 Upstream 37bp
chr2 239038781 239038781 1 + A C rs200935476 239038799 + 239038779 239038819 41 GGAGCTCAGGCCCCACGGAGCAGGCGGCCTGGAGGTACTCA GGCGCTCAGGCCCCACGGAGCAGGCGGCCTGGAGGTACTCA < 41bp 1 0.56325966049743 1 0.930317163467407 experiment 0.87348067900514 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ESPNL ENSG00000144488 CDS Human protein_coding chr2:239038799 chr2:239038781 nonsynonymous SNV 0.000 0 3 hm5C_associated_SNPs_4176 0 0 0 0 1 ESPNL chr2:239038769 3'AG 239038769 Downstream 13bp
chr2 241500481 241500481 1 + C A rs571403854 241500464 + 241500444 241500484 41 ACCGCGTACCTCATGCGGCACCGCGGCCTCAGCCTGGCGAA ACCGCGTACCTCATGCGGCACCGCGGCCTCAGCCTGGAGAA < 41bp 1 0.466624320790833 1 0.0559470951557159 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DUSP28 ENSG00000188542 CDS Human protein_coding chr2:241500464 chr2:241500481 nonsynonymous SNV 0.002 1 38 hm5C_associated_SNPs_4194 0 0 1 0 1 DUSP28 chr2:241500494 5'GT 241500494 Upstream 14bp
chr2 241514984 241514984 1 + C T rs531855875 241514997 + 241514977 241515017 41 TCCTGAGCTTCTTCCCGGAGCTGAAGGAGCAGAGCGTGGAC TCCTGAGTTTCTTCCCGGAGCTGAAGGAGCAGAGCGTGGAC < 41bp 1 0.630739300358941 1 0.243792921304703 experiment 0.738521399282119 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241514997 chr2:241514984 synonymous SNV . 0 8 hm5C_associated_SNPs_4195 0 0 1 0 1 RNPEPL1 chr2:241515027 5'GT 241515027 Upstream 44bp
chr3 4856234 4856234 1 + G A rs901854 4856235 + 4856215 4856255 41 TAGGAGATGTACTCAGGAAGCCGTCCAAAGAGGTAAATTAA TAGGAGATGTACTCAGGAAACCGTCCAAAGAGGTAAATTAA < 41bp 1 0.0466667053153709 1 0.454815953969955 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4856235 chr3:4856234 synonymous SNV . 0 20 hm5C_associated_SNPs_4197 2 0 1 0 1 ITPR1 chr3:4856246 5'GT 4856246 Upstream 13bp
chr3 8579093 8579093 1 + C T rs139605755 8579084 + 8579064 8579104 41 AAAGATCCCACTTTTGACACCATCACCTACGAGTGGGCTCC AAAGATCCCACTTTTGACACCATCACCTATGAGTGGGCTCC < 41bp 1 0.23962990763298 1 0.0807181000709534 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LMCD1 ENSG00000071282 CDS Human protein_coding chr3:8579084 chr3:8579093 synonymous SNV . 0 30 hm5C_associated_SNPs_4212 0 0 0 0 1 LMCD1 chr3:8579126 5'GT 8579126 Upstream 34bp
chr3 9775887 9775887 1 + C T rs116359925 9775905 + 9775885 9775925 41 TACGAGTGCCCGGTGGAGACCTGCCGAAAGGTCTACAAGAG TATGAGTGCCCGGTGGAGACCTGCCGAAAGGTCTACAAGAG < 41bp 1 0.444770478167516 1 0.354015231132507 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9775905 chr3:9775887 synonymous SNV . 0 3 hm5C_associated_SNPs_4217 0 0 1 0 1 BRPF1 chr3:9775815 3'AG 9775815 Downstream 73bp
chr3 11596296 11596296 1 + G A rs570582042 11596287 + 11596267 11596307 41 CTCCCCTTCTCCATGCAGATCTGGGACATGAGCGATGATGA CTCCCCTTCTCCATGCAGATCTGGGACATAAGCGATGATGA < 41bp 1 0.594407483331401 1 0.654296159744263 experiment 0.811185033337198 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATG7 ENSG00000197548 CDS Human protein_coding chr3:11596287 chr3:11596296 nonsynonymous SNV 0.988 1 30 hm5C_associated_SNPs_4263 0 0 1 0 1 ATG7 chr3:11596285 3'AG 11596285 Downstream 12bp
chr3 11596302 11596302 1 + T C rs8154 11596287 + 11596267 11596307 41 CTCCCCTTCTCCATGCAGATCTGGGACATGAGCGATGATGA CTCCCCTTCTCCATGCAGATCTGGGACATGAGCGACGATGA < 41bp 1 0.648273100640423 1 0.603167831897736 experiment 0.703453798719155 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATG7 ENSG00000197548 CDS Human protein_coding chr3:11596287 chr3:11596302 synonymous SNV . 0 36 hm5C_associated_SNPs_4264 0 0 1 0 1 ATG7 chr3:11596285 3'AG 11596285 Downstream 18bp
chr3 12531407 12531407 1 + A G rs77258715 12531390 + 12531370 12531410 41 CAATCCCTTTTGGTCAGGACCATGGTCCTCTGAAAGAATTC CAATCCCTTTTGGTCAGGACCATGGTCCTCTGAAAGAGTTC < 41bp 1 0.326016168784584 1 0.263193994760513 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12531390 chr3:12531407 synonymous SNV . 0 38 hm5C_associated_SNPs_4267 1 0 1 0 1 TSEN2 chr3:12531488 5'GT 12531488 Upstream 82bp
chr3 14487265 14487265 1 + C T rs2228585 14487269 + 14487249 14487289 41 TTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTTGGAG TTTTCCTGTTTGGGAGTGGCCTGCCTGTGTTTTTCTTGGAG < 41bp 1 0.360936050271627 1 0.188533633947372 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487269 chr3:14487265 synonymous SNV . 0 17 hm5C_associated_SNPs_4272 0 0 1 1 2 SLC6A6 chr3:14487225 3'AG 14487225 Downstream 41bp
chr3 14487265 14487265 1 + C T rs2228585 14487269 + 14487249 14487289 41 TTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTTGGAG TTTTCCTGTTTGGGAGTGGCCTGCCTGTGTTTTTCTTGGAG < 41bp 1 0.360936050271627 1 0.188533633947372 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487269 chr3:14487265 synonymous SNV . 0 17 hm5C_associated_SNPs_4272 0 0 1 1 2 SLC6A6 chr3:14487359 5'GT 14487359 Upstream 95bp
chr3 14989317 14989317 1 + G A rs533463836 14989298 + 14989278 14989318 41 GAGCCCGCGGCCCCCGGGCTCCCGCCATCCGCCGACACCGG GAGCCCGCGGCCCCCGGGCTCCCGCCATCCGCCGACACCAG < 41bp 1 0.441297461658637 1 0.161542236804962 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FGD5-AS1 ENSG00000225733 ncRNA_exonic Human antisense chr3:14989298 chr3:14989317 . . 0 40 hm5C_associated_SNPs_4285 0 0 1 0 1 FGD5-AS1 chr3:14989413 5'GT 14989413 Upstream 97bp
chr3 14989317 14989317 1 + G A rs533463836 14989299 + 14989279 14989319 41 AGCCCGCGGCCCCCGGGCTCCCGCCATCCGCCGACACCGGG AGCCCGCGGCCCCCGGGCTCCCGCCATCCGCCGACACCAGG < 41bp 1 0.36229014053898 1 0.166013777256012 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FGD5-AS1 ENSG00000225733 ncRNA_exonic Human antisense chr3:14989299 chr3:14989317 . . 0 39 hm5C_associated_SNPs_4286 0 0 1 0 1 FGD5-AS1 chr3:14989413 5'GT 14989413 Upstream 97bp
chr3 14989317 14989317 1 + G A rs533463836 14989322 + 14989302 14989342 41 CCATCCGCCGACACCGGGAGCCCGGGCTCCCCGCGCCCTGC CCATCCGCCGACACCAGGAGCCCGGGCTCCCCGCGCCCTGC < 41bp 1 0.698013977381157 1 0.346778213977814 experiment 0.603972045237686 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FGD5-AS1 ENSG00000225733 ncRNA_exonic Human antisense chr3:14989322 chr3:14989317 . . 0 16 hm5C_associated_SNPs_4287 0 0 1 0 1 FGD5-AS1 chr3:14989413 5'GT 14989413 Upstream 97bp
chr3 16312564 16312564 1 + C T rs842259 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTCAGCACTTTGCGCCATCTTACTCTAACCAGGTGA < 41bp 1 0.0924857831881103 1 0.0683153569698334 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312564 synonymous SNV . 0 23 hm5C_associated_SNPs_4291 0 0 1 0 1 OXNAD1 chr3:16312578 5'GT 16312578 Upstream 15bp
chr3 17056271 17056271 1 + G A rs61755446 17056251 + 17056231 17056271 41 GCCTCTCCTCTGTGGCCAATCTCATGCAGTGCATGTTGGCG GCCTCTCCTCTGTGGCCAATCTCATGCAGTGCATGTTGGCA < 41bp 1 0.53046545048774 1 0.131004124879837 experiment 0.939069099024521 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCL2 ENSG00000154822 CDS Human protein_coding chr3:17056251 chr3:17056271 synonymous SNV . 0 41 hm5C_associated_SNPs_4292 0 0 0 0 1 PLCL2 chr3:17056200 3'AG 17056200 Downstream 72bp
chr3 20019806 20019806 1 + C T rs200242114 20019825 + 20019805 20019845 41 GCACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA GTACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA < 41bp 1 0.465192667060081 1 0.120863735675812 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019825 chr3:20019806 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_4293 0 0 1 2 2 RAB5A chr3:20019802 3'AG 20019802 Downstream 5bp
chr3 20019806 20019806 1 + C T rs200242114 20019825 + 20019805 20019845 41 GCACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA GTACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA < 41bp 1 0.465192667060081 1 0.120863735675812 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019825 chr3:20019806 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_4293 0 0 1 2 2 RAB5A chr3:20019895 5'GT 20019895 Upstream 90bp
chr3 23958648 23958648 1 + C T rs34200392 23958644 + 23958624 23958664 41 GGAGTACAGCTCTTTCCTTTCCGTCTGGCGGCAGCCATCAG GGAGTACAGCTCTTTCCTTTCCGTTTGGCGGCAGCCATCAG < 41bp 1 0.381460523596803 1 0.0795766413211823 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR5 Human protein_coding chr3:23958644 chr3:23958648 . . 0 25 hm5C_associated_SNPs_4294 0 0 1 0 2 RPL15 chr3:23958664 5'GT 23958664 Upstream 17bp
chr3 23958648 23958648 1 + C T rs34200392 23958644 + 23958624 23958664 41 GGAGTACAGCTCTTTCCTTTCCGTCTGGCGGCAGCCATCAG GGAGTACAGCTCTTTCCTTTCCGTTTGGCGGCAGCCATCAG < 41bp 1 0.381460523596803 1 0.0795766413211823 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR5 Human protein_coding chr3:23958644 chr3:23958648 . . 0 25 hm5C_associated_SNPs_4294 0 0 1 0 2 RPL15 chr3:23958730 5'GT 23958730 Upstream 83bp
chr3 23960001 23960001 1 + C T rs35608037 23959994 + 23959974 23960014 41 ACGCCCAGTTCCTAAGGGTGCAACTTACGGCAAGCCTGTCC ACGCCCAGTTCCTAAGGGTGCAACTTATGGCAAGCCTGTCC < 41bp 1 0.387146144635767 1 0.0788879692554474 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL15 ENSG00000174748 CDS Human protein_coding chr3:23959994 chr3:23960001 synonymous SNV . 0 28 hm5C_associated_SNPs_4295 0 0 1 0 3 RPL15 chr3:23959931 3'AG 23959931 Downstream 71bp
chr3 23960001 23960001 1 + C T rs35608037 23959994 + 23959974 23960014 41 ACGCCCAGTTCCTAAGGGTGCAACTTACGGCAAGCCTGTCC ACGCCCAGTTCCTAAGGGTGCAACTTATGGCAAGCCTGTCC < 41bp 1 0.387146144635767 1 0.0788879692554474 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL15 ENSG00000174748 CDS Human protein_coding chr3:23959994 chr3:23960001 synonymous SNV . 0 28 hm5C_associated_SNPs_4295 0 0 1 0 3 RPL15 chr3:23960054 5'GT 23960054 Upstream 54bp
chr3 23960001 23960001 1 + C T rs35608037 23959994 + 23959974 23960014 41 ACGCCCAGTTCCTAAGGGTGCAACTTACGGCAAGCCTGTCC ACGCCCAGTTCCTAAGGGTGCAACTTATGGCAAGCCTGTCC < 41bp 1 0.387146144635767 1 0.0788879692554474 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL15 ENSG00000174748 CDS Human protein_coding chr3:23959994 chr3:23960001 synonymous SNV . 0 28 hm5C_associated_SNPs_4295 0 0 1 0 3 RPL15 chr3:23960067 5'GT 23960067 Upstream 67bp
chr3 23963182 23963182 1 + C T rs576117403 23963186 + 23963166 23963206 41 AGCAATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTAC AGCAATTCTTCTGCCTTGGCCTCCCAAATAGCCAGGACTAC < 41bp 1 0.309281618402844 1 0.191103249788284 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963186 chr3:23963182 . . 0 17 hm5C_associated_SNPs_4296 0 0 0 0 1 RPL15 chr3:23963089 3'AG 23963089 Downstream 94bp
chr3 23963182 23963182 1 + C T rs576117403 23963189 + 23963169 23963209 41 AATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTACAGG AATTCTTCTGCCTTGGCCTCCCAAATAGCCAGGACTACAGG < 41bp 1 0.356831611876595 1 0.32557687163353 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963189 chr3:23963182 . . 0 14 hm5C_associated_SNPs_4297 0 0 0 0 1 RPL15 chr3:23963089 3'AG 23963089 Downstream 94bp
chr3 23963183 23963183 1 + G A rs9755750 23963186 + 23963166 23963206 41 AGCAATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTAC AGCAATTCTTCTGCCTCAGCCTCCCAAATAGCCAGGACTAC < 41bp 1 0.334040439493585 1 0.449836760759354 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963186 chr3:23963183 . . 0 18 hm5C_associated_SNPs_4298 0 0 0 0 1 RPL15 chr3:23963089 3'AG 23963089 Downstream 95bp
chr3 23963183 23963183 1 + G A rs9755750 23963189 + 23963169 23963209 41 AATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTACAGG AATTCTTCTGCCTCAGCCTCCCAAATAGCCAGGACTACAGG < 41bp 1 0.359061572648936 1 0.329344213008881 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963189 chr3:23963183 . . 0 15 hm5C_associated_SNPs_4299 0 0 0 0 1 RPL15 chr3:23963089 3'AG 23963089 Downstream 95bp
chr3 31674561 31674561 1 + A G rs140420950 31674578 + 31674558 31674598 41 AGCACCTGATAACAGGGAGACATTAGATCACAAACCTCGAG AGCGCCTGATAACAGGGAGACATTAGATCACAAACCTCGAG < 41bp 1 0.232034257422413 1 0.233586996793747 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STT3B ENSG00000163527 CDS Human protein_coding chr3:31674578 chr3:31674561 synonymous SNV . 0 4 hm5C_associated_SNPs_4304 1 0 1 0 1 STT3B chr3:31674639 5'GT 31674639 Upstream 79bp
chr3 33183947 33183947 1 + G A rs145383822 33183934 + 33183914 33183954 41 CTCTTGGAACTGGAGGAGACCAGCTAGCCCACAGCAACCAA CTCTTGGAACTGGAGGAGACCAGCTAGCCCACAACAACCAA < 41bp 1 0.390905819395777 1 0.14238053560257 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CRTAP ENSG00000170275 UTR3 Human protein_coding chr3:33183934 chr3:33183947 . . 0 34 hm5C_associated_SNPs_4312 0 0 1 1 1 CRTAP chr3:33183887 3'AG 33183887 Downstream 61bp
chr3 33883492 33883492 1 + G A rs76608858 33883497 + 33883477 33883517 41 GTGATTGAACAGGGAGGCATCCAGACTGTTGATCAGTTGAT GTGATTGAACAGGGAAGCATCCAGACTGTTGATCAGTTGAT < 41bp 1 0.548193900511669 1 0.147662401199341 experiment 0.903612198976661 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33883497 chr3:33883492 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_4313 0 0 0 0 1 PDCD6IP chr3:33883566 5'GT 33883566 Upstream 75bp
chr3 33906737 33906737 1 + T C rs74450908 33906745 + 33906725 33906765 41 TTTCTTATAGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTC TTTCTTATAGCCCACTAAGCCCCAGCCCCCAGCCAGGCCTC < 41bp 1 0.384144591186833 1 0.150980204343796 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906745 chr3:33906737 synonymous SNV . 0 13 hm5C_associated_SNPs_4314 0 0 1 0 1 PDCD6IP chr3:33906735 3'AG 33906735 Downstream 3bp
chr3 33906737 33906737 1 + T C rs74450908 33906746 + 33906726 33906766 41 TTCTTATAGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCC TTCTTATAGCCCACTAAGCCCCAGCCCCCAGCCAGGCCTCC < 41bp 1 0.122735272343366 1 0.156276643276215 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906746 chr3:33906737 synonymous SNV . 0 12 hm5C_associated_SNPs_4315 0 0 1 0 1 PDCD6IP chr3:33906735 3'AG 33906735 Downstream 3bp
chr3 33906737 33906737 1 + T C rs74450908 33906747 + 33906727 33906767 41 TCTTATAGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCCA TCTTATAGCCCACTAAGCCCCAGCCCCCAGCCAGGCCTCCA < 41bp 1 0.342337913384565 1 0.17132967710495 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906747 chr3:33906737 synonymous SNV . 0 11 hm5C_associated_SNPs_4316 0 0 1 0 1 PDCD6IP chr3:33906735 3'AG 33906735 Downstream 3bp
chr3 33906737 33906737 1 + T C rs74450908 33906750 + 33906730 33906770 41 TATAGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCA TATAGCCCACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCA < 41bp 1 0.126365842217217 1 0.141971617937088 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906750 chr3:33906737 synonymous SNV . 0 8 hm5C_associated_SNPs_4317 0 0 1 0 1 PDCD6IP chr3:33906735 3'AG 33906735 Downstream 3bp
chr3 33906737 33906737 1 + T C rs74450908 33906751 + 33906731 33906771 41 ATAGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCAC ATAGCCCACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCAC < 41bp 1 0.609126175470879 1 0.316900044679642 experiment 0.781747649058242 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906751 chr3:33906737 synonymous SNV . 0 7 hm5C_associated_SNPs_4318 0 0 1 0 1 PDCD6IP chr3:33906735 3'AG 33906735 Downstream 3bp
chr3 33906737 33906737 1 + T C rs74450908 33906752 + 33906732 33906772 41 TAGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCACC TAGCCCACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCACC < 41bp 1 0.194717135440618 1 0.236248970031738 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906752 chr3:33906737 synonymous SNV . 0 6 hm5C_associated_SNPs_4319 0 0 1 0 1 PDCD6IP chr3:33906735 3'AG 33906735 Downstream 3bp
chr3 33906737 33906737 1 + T C rs74450908 33906753 + 33906733 33906773 41 AGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCACCT AGCCCACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCACCT < 41bp 1 0.188383022399368 1 0.183061480522156 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906753 chr3:33906737 synonymous SNV . 0 5 hm5C_associated_SNPs_4320 0 0 1 0 1 PDCD6IP chr3:33906735 3'AG 33906735 Downstream 3bp
chr3 33906737 33906737 1 + T C rs74450908 33906754 + 33906734 33906774 41 GCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCACCTG GCCCACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCACCTG < 41bp 1 0.406783764399216 1 0.319036662578583 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906754 chr3:33906737 synonymous SNV . 0 4 hm5C_associated_SNPs_4321 0 0 1 0 1 PDCD6IP chr3:33906735 3'AG 33906735 Downstream 3bp
chr3 37090070 37090070 1 + G T rs1800146 37090068 + 37090048 37090088 41 ATGTGCCCCCTTTGGAGGGACTGCCTATCTTCATTCTTCGA ATGTGCCCCCTTTGGAGGGACTTCCTATCTTCATTCTTCGA < 41bp 1 0.158058012065076 1 0.0351168215274811 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MLH1 ENSG00000076242 CDS Human protein_coding chr3:37090068 chr3:37090070 synonymous SNV . 0 23 hm5C_associated_SNPs_4322 4 0 1 0 2 MLH1 chr3:37090008 3'AG 37090008 Downstream 63bp
chr3 37090070 37090070 1 + G T rs1800146 37090068 + 37090048 37090088 41 ATGTGCCCCCTTTGGAGGGACTGCCTATCTTCATTCTTCGA ATGTGCCCCCTTTGGAGGGACTTCCTATCTTCATTCTTCGA < 41bp 1 0.158058012065076 1 0.0351168215274811 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MLH1 ENSG00000076242 CDS Human protein_coding chr3:37090068 chr3:37090070 synonymous SNV . 0 23 hm5C_associated_SNPs_4322 4 0 1 0 2 MLH1 chr3:37090100 5'GT 37090100 Upstream 31bp
chr3 37090074 37090074 1 + A G rs55907433 37090068 + 37090048 37090088 41 ATGTGCCCCCTTTGGAGGGACTGCCTATCTTCATTCTTCGA ATGTGCCCCCTTTGGAGGGACTGCCTGTCTTCATTCTTCGA < 41bp 1 0.365634652701247 1 0.0487358272075653 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MLH1 ENSG00000076242 CDS Human protein_coding chr3:37090068 chr3:37090074 nonsynonymous SNV 0.999 2 27 hm5C_associated_SNPs_4323 5 0 1 0 2 MLH1 chr3:37090008 3'AG 37090008 Downstream 67bp
chr3 37090074 37090074 1 + A G rs55907433 37090068 + 37090048 37090088 41 ATGTGCCCCCTTTGGAGGGACTGCCTATCTTCATTCTTCGA ATGTGCCCCCTTTGGAGGGACTGCCTGTCTTCATTCTTCGA < 41bp 1 0.365634652701247 1 0.0487358272075653 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MLH1 ENSG00000076242 CDS Human protein_coding chr3:37090068 chr3:37090074 nonsynonymous SNV 0.999 2 27 hm5C_associated_SNPs_4323 5 0 1 0 2 MLH1 chr3:37090100 5'GT 37090100 Upstream 27bp
chr3 37336478 37336478 1 + A G rs202188013 37336473 + 37336453 37336493 41 ATCATTTTATGTTTTAGGAGCTCCAAATGGACCAGCAGGCA ATCATTTTATGTTTTAGGAGCTCCAGATGGACCAGCAGGCA < 41bp 1 0.362350181167529 1 0.609057486057281 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37336473 chr3:37336478 synonymous SNV . 0 26 hm5C_associated_SNPs_4324 0 0 1 0 2 GOLGA4 chr3:37336470 3'AG 37336470 Downstream 9bp
chr3 37336478 37336478 1 + A G rs202188013 37336473 + 37336453 37336493 41 ATCATTTTATGTTTTAGGAGCTCCAAATGGACCAGCAGGCA ATCATTTTATGTTTTAGGAGCTCCAGATGGACCAGCAGGCA < 41bp 1 0.362350181167529 1 0.609057486057281 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37336473 chr3:37336478 synonymous SNV . 0 26 hm5C_associated_SNPs_4324 0 0 1 0 2 GOLGA4 chr3:37336568 5'GT 37336568 Upstream 91bp
chr3 38022316 38022316 1 + G A rs116504860 38022310 + 38022290 38022330 41 CCCTTCTTTGAGGGCCTGAGCCGGGAGGACGACGTGTACAG CCCTTCTTTGAGGGCCTGAGCCGGGAAGACGACGTGTACAG < 41bp 1 0.763698706896472 1 0.610225915908813 experiment 0.472602586207055 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CTDSPL ENSG00000144677 CDS Human protein_coding chr3:38022310 chr3:38022316 synonymous SNV . 0 27 hm5C_associated_SNPs_4331 0 0 1 0 1 CTDSPL chr3:38022233 3'AG 38022233 Downstream 84bp
chr3 39431081 39431081 1 + G A rs2270770 39431076 + 39431056 39431096 41 CTCTGGATCTCCTTAAAACACGCCTGCAAACCCTCCAGCCC CTCTGGATCTCCTTAAAACACGCCTACAAACCCTCCAGCCC < 41bp 1 0.748792351242654 1 0.163265228271484 experiment 0.502415297514693 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431076 chr3:39431081 synonymous SNV . 0 26 hm5C_associated_SNPs_4334 3 0 0 0 2 SLC25A38 chr3:39430986 3'AG 39430986 Downstream 96bp
chr3 39431081 39431081 1 + G A rs2270770 39431076 + 39431056 39431096 41 CTCTGGATCTCCTTAAAACACGCCTGCAAACCCTCCAGCCC CTCTGGATCTCCTTAAAACACGCCTACAAACCCTCCAGCCC < 41bp 1 0.748792351242654 1 0.163265228271484 experiment 0.502415297514693 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431076 chr3:39431081 synonymous SNV . 0 26 hm5C_associated_SNPs_4334 3 0 0 0 2 SLC25A38 chr3:39431107 5'GT 39431107 Upstream 27bp
chr3 40498845 40498845 1 + C T rs2276868 40498829 + 40498809 40498849 41 AGGGTTGGGCGGGTCTTCTTCCTTCTCGCCTAACGCCGCCA AGGGTTGGGCGGGTCTTCTTCCTTCTCGCCTAACGCTGCCA < 41bp 1 0.0679884081784402 1 0.069646418094635 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL14 ENSG00000188846 UTR5 Human protein_coding chr3:40498829 chr3:40498845 . . 0 37 hm5C_associated_SNPs_4340 0 0 1 0 1 RPL14 chr3:40498854 5'GT 40498854 Upstream 10bp
chr3 40498920 40498920 1 + A T rs2276869 40498931 + 40498911 40498951 41 TCCGCTGGGAAGCTGAGGCGCCAAACGGCTCCCAGAGGGTC TCCGCTGGGTAGCTGAGGCGCCAAACGGCTCCCAGAGGGTC < 41bp 1 0.563750198513686 1 0.178496122360229 experiment 0.872499602972629 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL14 ENSG00000188846 UTR5 Human protein_coding chr3:40498931 chr3:40498920 . . 0 10 hm5C_associated_SNPs_4341 0 0 1 0 1 RPL14 chr3:40498965 5'GT 40498965 Upstream 46bp
chr3 40498920 40498920 1 + A T rs2276869 40498932 + 40498912 40498952 41 CCGCTGGGAAGCTGAGGCGCCAAACGGCTCCCAGAGGGTCC CCGCTGGGTAGCTGAGGCGCCAAACGGCTCCCAGAGGGTCC < 41bp 1 0.5195973118813 1 0.218872845172882 experiment 0.9608053762374 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL14 ENSG00000188846 UTR5 Human protein_coding chr3:40498932 chr3:40498920 . . 0 9 hm5C_associated_SNPs_4342 0 0 1 0 1 RPL14 chr3:40498965 5'GT 40498965 Upstream 46bp
chr3 40498933 40498933 1 + A G rs4973904 40498931 + 40498911 40498951 41 TCCGCTGGGAAGCTGAGGCGCCAAACGGCTCCCAGAGGGTC TCCGCTGGGAAGCTGAGGCGCCGAACGGCTCCCAGAGGGTC < 41bp 1 0.655587590175306 1 0.259960770606995 experiment 0.688824819649387 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL14 ENSG00000188846 UTR5 Human protein_coding chr3:40498931 chr3:40498933 . . 0 23 hm5C_associated_SNPs_4343 0 0 1 0 1 RPL14 chr3:40498965 5'GT 40498965 Upstream 33bp
chr3 40498933 40498933 1 + A G rs4973904 40498932 + 40498912 40498952 41 CCGCTGGGAAGCTGAGGCGCCAAACGGCTCCCAGAGGGTCC CCGCTGGGAAGCTGAGGCGCCGAACGGCTCCCAGAGGGTCC < 41bp 1 0.557139485586457 1 0.21683669090271 experiment 0.885721028827085 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL14 ENSG00000188846 UTR5 Human protein_coding chr3:40498932 chr3:40498933 . . 0 22 hm5C_associated_SNPs_4344 0 0 1 0 1 RPL14 chr3:40498965 5'GT 40498965 Upstream 33bp
chr3 40499415 40499415 1 + C T rs181009417 40499425 + 40499405 40499445 41 GGCCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAA GGCCGGGTGGTCTATGTCTCCTTTGGACCTCATGCCGGAAA < 41bp 1 0.403078742049718 1 0.0536520481109619 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL14 ENSG00000188846 CDS Human protein_coding chr3:40499425 chr3:40499415 nonsynonymous SNV 1.000 0 11 hm5C_associated_SNPs_4345 0 0 1 0 1 RPL14 chr3:40499381 3'AG 40499381 Downstream 35bp
chr3 40499445 40499445 1 + A G rs35187187 40499425 + 40499405 40499445 41 GGCCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAA GGCCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAG < 41bp 1 0.408900064285162 1 0.0547160804271698 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL14 ENSG00000188846 CDS Human protein_coding chr3:40499425 chr3:40499445 nonsynonymous SNV 0.910 0 41 hm5C_associated_SNPs_4346 0 0 1 0 1 RPL14 chr3:40499381 3'AG 40499381 Downstream 65bp
chr3 40503478 40503478 1 + C A rs145682545 40503488 + 40503468 40503508 41 AAAGGCAGCTCTCCTGAAAGCTTCTCCCAAAAAAGCACCTG AAAGGCAGCTATCCTGAAAGCTTCTCCCAAAAAAGCACCTG < 41bp 1 0.226935534485088 1 0.159801542758942 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL14 ENSG00000188846 CDS Human other chr3:40503488 chr3:40503478 nonsynonymous SNV 0.997 0 11 hm5C_associated_SNPs_4347 0 0 0 0 1 RPL14 chr3:40503430 3'AG 40503430 Downstream 49bp
chr3 40503506 40503506 1 + C T rs148931839 40503488 + 40503468 40503508 41 AAAGGCAGCTCTCCTGAAAGCTTCTCCCAAAAAAGCACCTG AAAGGCAGCTCTCCTGAAAGCTTCTCCCAAAAAAGCACTTG < 41bp 1 0.202316407239591 1 0.14392501115799 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL14 ENSG00000188846 CDS Human other chr3:40503488 chr3:40503506 nonsynonymous SNV 0.543 1 39 hm5C_associated_SNPs_4348 0 0 1 0 1 RPL14 chr3:40503430 3'AG 40503430 Downstream 77bp
chr3 41275106 41275106 1 + T C rs4135379 41275104 + 41275084 41275124 41 TCACCTGTGCAGCTGGAATTCTTTCTAACCTCACTTGCAAT TCACCTGTGCAGCTGGAATTCTCTCTAACCTCACTTGCAAT < 41bp 1 0.281525328102292 1 0.355161786079407 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41275104 chr3:41275106 synonymous SNV . 0 23 hm5C_associated_SNPs_4363 1 0 1 0 1 CTNNB1 chr3:41275020 3'AG 41275020 Downstream 87bp
chr3 43732440 43732440 1 + T A rs375436268 43732441 + 43732421 43732461 41 GGGCGGCCCAGTCGGCCTGTCAGCCGGCTTCGAGATAAGTC GGGCGGCCCAGTCGGCCTGACAGCCGGCTTCGAGATAAGTC < 41bp 1 0.666623968533903 1 0.385254472494125 experiment 0.666752062932193 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABHD5 ENSG00000011198 UTR5 Human protein_coding chr3:43732441 chr3:43732440 . . 0 20 hm5C_associated_SNPs_4366 0 0 1 0 1 ABHD5 chr3:43732531 5'GT 43732531 Upstream 92bp
chr3 43732461 43732461 1 + C A rs189850893 43732441 + 43732421 43732461 41 GGGCGGCCCAGTCGGCCTGTCAGCCGGCTTCGAGATAAGTC GGGCGGCCCAGTCGGCCTGTCAGCCGGCTTCGAGATAAGTA < 41bp 1 0.685611781874315 1 0.38724946975708 experiment 0.62877643625137 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABHD5 ENSG00000011198 UTR5 Human protein_coding chr3:43732441 chr3:43732461 . . 0 41 hm5C_associated_SNPs_4367 0 0 1 0 1 ABHD5 chr3:43732531 5'GT 43732531 Upstream 71bp
chr3 44442775 44442775 1 + T C rs191875479 44442795 + 44442775 44442815 41 TTATTCTCACCAAAGCTCAGCAGGCAAGAGAGAACATGAAA CTATTCTCACCAAAGCTCAGCAGGCAAGAGAGAACATGAAA < 41bp 1 0.313550079814391 1 0.199618399143219 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCAIM ENSG00000179152 CDS Human protein_coding chr3:44442795 chr3:44442775 nonsynonymous SNV 0.770 4 1 hm5C_associated_SNPs_4368 0 0 1 0 1 TCAIM chr3:44442695 3'AG 44442695 Downstream 81bp
chr3 45043095 45043095 1 + T C rs34376719 45043087 + 45043067 45043107 41 CCATTGCTGTAAAGGCTGCTCTCTTCAATACAAGGTAAGTC CCATTGCTGTAAAGGCTGCTCTCTTCAACACAAGGTAAGTC < 41bp 1 0.205565789218855 1 0.116656422615051 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EXOSC7 ENSG00000075914 CDS Human protein_coding chr3:45043087 chr3:45043095 synonymous SNV . 0 29 hm5C_associated_SNPs_4373 0 0 1 0 2 EXOSC7 chr3:45043030 3'AG 45043030 Downstream 66bp
chr3 45043095 45043095 1 + T C rs34376719 45043087 + 45043067 45043107 41 CCATTGCTGTAAAGGCTGCTCTCTTCAATACAAGGTAAGTC CCATTGCTGTAAAGGCTGCTCTCTTCAACACAAGGTAAGTC < 41bp 1 0.205565789218855 1 0.116656422615051 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EXOSC7 ENSG00000075914 CDS Human protein_coding chr3:45043087 chr3:45043095 synonymous SNV . 0 29 hm5C_associated_SNPs_4373 0 0 1 0 2 EXOSC7 chr3:45043100 5'GT 45043100 Upstream 6bp
chr3 45565515 45565515 1 + C T rs533890419 45565503 + 45565483 45565523 41 CCTTAGCAAGCCTCTCAGAGCGTCATTCTCCACAGCCCCGA CCTTAGCAAGCCTCTCAGAGCGTCATTCTCCATAGCCCCGA < 41bp 1 0.554283915562806 1 0.0790659785270691 experiment 0.891432168874388 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LARS2 ENSG00000011376 CDS Human protein_coding chr3:45565503 chr3:45565515 synonymous SNV . 0 33 hm5C_associated_SNPs_4374 0 0 1 0 2 LARS2 chr3:45565489 3'AG 45565489 Downstream 27bp
chr3 45565515 45565515 1 + C T rs533890419 45565503 + 45565483 45565523 41 CCTTAGCAAGCCTCTCAGAGCGTCATTCTCCACAGCCCCGA CCTTAGCAAGCCTCTCAGAGCGTCATTCTCCATAGCCCCGA < 41bp 1 0.554283915562806 1 0.0790659785270691 experiment 0.891432168874388 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LARS2 ENSG00000011376 CDS Human protein_coding chr3:45565503 chr3:45565515 synonymous SNV . 0 33 hm5C_associated_SNPs_4374 0 0 1 0 2 LARS2 chr3:45565600 5'GT 45565600 Upstream 86bp
chr3 47041759 47041759 1 + G A rs139822454 47041773 + 47041753 47041793 41 TCCTTCGCCACTGGATGGGCCGCGGCCCTTTCCTGCTGCTC TCCTTCACCACTGGATGGGCCGCGGCCCTTTCCTGCTGCTC < 41bp 1 0.374112464117829 1 0.492101550102234 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041773 chr3:47041759 synonymous SNV . 0 7 hm5C_associated_SNPs_4376 1 0 1 0 1 NBEAL2 chr3:47041686 3'AG 47041686 Downstream 74bp
chr3 47041774 47041774 1 + G A rs115350407 47041773 + 47041753 47041793 41 TCCTTCGCCACTGGATGGGCCGCGGCCCTTTCCTGCTGCTC TCCTTCGCCACTGGATGGGCCACGGCCCTTTCCTGCTGCTC < 41bp 1 0.316654990383971 1 0.339733809232712 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041773 chr3:47041774 synonymous SNV . 0 22 hm5C_associated_SNPs_4377 0 0 1 0 1 NBEAL2 chr3:47041686 3'AG 47041686 Downstream 89bp
chr3 47041777 47041777 1 + G A rs199842407 47041773 + 47041753 47041793 41 TCCTTCGCCACTGGATGGGCCGCGGCCCTTTCCTGCTGCTC TCCTTCGCCACTGGATGGGCCGCGACCCTTTCCTGCTGCTC < 41bp 1 0.483997862090656 1 0.552391111850739 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041773 chr3:47041777 synonymous SNV . 0 25 hm5C_associated_SNPs_4378 0 0 1 0 1 NBEAL2 chr3:47041686 3'AG 47041686 Downstream 92bp
chr3 47047849 47047849 1 + T C rs564623375 47047857 + 47047837 47047877 41 TCGGCTCTCAGCTGAGGAAGCAGCCCATCGCCTTGCACGCC TCGGCTCTCAGCCGAGGAAGCAGCCCATCGCCTTGCACGCC < 41bp 1 0.189709917467235 1 0.728836715221405 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47047857 chr3:47047849 synonymous SNV . 0 13 hm5C_associated_SNPs_4379 0 0 0 0 2 NBEAL2 chr3:47047823 3'AG 47047823 Downstream 27bp
chr3 47047849 47047849 1 + T C rs564623375 47047857 + 47047837 47047877 41 TCGGCTCTCAGCTGAGGAAGCAGCCCATCGCCTTGCACGCC TCGGCTCTCAGCCGAGGAAGCAGCCCATCGCCTTGCACGCC < 41bp 1 0.189709917467235 1 0.728836715221405 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47047857 chr3:47047849 synonymous SNV . 0 13 hm5C_associated_SNPs_4379 0 0 0 0 2 NBEAL2 chr3:47047939 5'GT 47047939 Upstream 91bp
chr3 47382161 47382161 1 + G A rs138603242 47382146 + 47382126 47382166 41 TCCCTCAGCTCCGTGGAGACCTACTCACCTGAGACGGACAA TCCCTCAGCTCCGTGGAGACCTACTCACCTGAGACAGACAA < 41bp 1 0.298301473483381 1 0.215106427669525 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47382146 chr3:47382161 synonymous SNV . 0 36 hm5C_associated_SNPs_4382 0 0 1 0 2 KLHL18 chr3:47382062 3'AG 47382062 Downstream 100bp
chr3 47382161 47382161 1 + G A rs138603242 47382146 + 47382126 47382166 41 TCCCTCAGCTCCGTGGAGACCTACTCACCTGAGACGGACAA TCCCTCAGCTCCGTGGAGACCTACTCACCTGAGACAGACAA < 41bp 1 0.298301473483381 1 0.215106427669525 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47382146 chr3:47382161 synonymous SNV . 0 36 hm5C_associated_SNPs_4382 0 0 1 0 2 KLHL18 chr3:47382166 5'GT 47382166 Upstream 6bp
chr3 47447473 47447473 1 + C A rs138320436 47447468 + 47447448 47447488 41 CCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGC CCTTCGCCTACCTACGGGAGCACTTACCTCAAGCCTACAGC < 41bp 1 0.0794110021967535 1 0.0278002619743347 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47447468 chr3:47447473 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_4383 0 0 1 0 3 PTPN23 chr3:47447405 3'AG 47447405 Downstream 69bp
chr3 47447473 47447473 1 + C A rs138320436 47447468 + 47447448 47447488 41 CCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGC CCTTCGCCTACCTACGGGAGCACTTACCTCAAGCCTACAGC < 41bp 1 0.0794110021967535 1 0.0278002619743347 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47447468 chr3:47447473 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_4383 0 0 1 0 3 PTPN23 chr3:47447435 3'AG 47447435 Downstream 39bp
chr3 47447473 47447473 1 + C A rs138320436 47447468 + 47447448 47447488 41 CCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGC CCTTCGCCTACCTACGGGAGCACTTACCTCAAGCCTACAGC < 41bp 1 0.0794110021967535 1 0.0278002619743347 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47447468 chr3:47447473 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_4383 0 0 1 0 3 PTPN23 chr3:47447536 5'GT 47447536 Upstream 64bp
chr3 48265146 48265146 1 + C T rs186026958 48265164 + 48265144 48265184 41 AGCGGTCCTCGGATGCTAACCTCTACCGCCTCCTGGACCTG AGTGGTCCTCGGATGCTAACCTCTACCGCCTCCTGGACCTG < 41bp 1 0.641530946403418 1 0.890673398971558 experiment 0.716938107193164 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control CAMP ENSG00000164047 CDS Human protein_coding chr3:48265164 chr3:48265146 nonsynonymous SNV 0.611 0 3 hm5C_associated_SNPs_4386 0 0 0 0 1 CAMP chr3:48265202 5'GT 48265202 Upstream 57bp
chr3 48265173 48265173 1 + C T rs566707956 48265164 + 48265144 48265184 41 AGCGGTCCTCGGATGCTAACCTCTACCGCCTCCTGGACCTG AGCGGTCCTCGGATGCTAACCTCTACCGCTTCCTGGACCTG < 41bp 1 0.548290891910511 1 0.877153396606445 experiment 0.903418216178977 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control CAMP ENSG00000164047 CDS Human protein_coding chr3:48265164 chr3:48265173 nonsynonymous SNV 0.939 2 30 hm5C_associated_SNPs_4387 0 0 0 0 1 CAMP chr3:48265202 5'GT 48265202 Upstream 30bp
chr3 48501519 48501519 1 + G A rs145979024 48501526 + 48501506 48501546 41 CAGTACCTTGGCTGGAATGTCAGGCCTCAGGACCACAGGTT CAGTACCTTGGCTAGAATGTCAGGCCTCAGGACCACAGGTT < 41bp 1 0.298402714422095 1 0.680025041103363 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48501526 chr3:48501519 nonsynonymous SNV 0.986 0 14 hm5C_associated_SNPs_4390 0 0 0 0 1 ATRIP chr3:48501509 3'AG 48501509 Downstream 11bp
chr3 48501539 48501539 1 + C T rs571666281 48501526 + 48501506 48501546 41 CAGTACCTTGGCTGGAATGTCAGGCCTCAGGACCACAGGTT CAGTACCTTGGCTGGAATGTCAGGCCTCAGGACTACAGGTT < 41bp 1 0.353070718955955 1 0.638180673122406 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48501526 chr3:48501539 synonymous SNV . 0 34 hm5C_associated_SNPs_4391 0 0 0 0 1 ATRIP chr3:48501509 3'AG 48501509 Downstream 31bp
chr3 50131278 50131278 1 + C T rs566441117 50131269 + 50131249 50131289 41 GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCAT GAGAGGGAGAGCAAGACCATCATGCTGCGTGGCCTTCCCAT < 41bp 1 0.407606994591785 1 0.239703893661499 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131269 chr3:50131278 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_4400 0 0 1 0 2 RBM5 chr3:50131254 3'AG 50131254 Downstream 25bp
chr3 50131278 50131278 1 + C T rs566441117 50131269 + 50131249 50131289 41 GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCAT GAGAGGGAGAGCAAGACCATCATGCTGCGTGGCCTTCCCAT < 41bp 1 0.407606994591785 1 0.239703893661499 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131269 chr3:50131278 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_4400 0 0 1 0 2 RBM5 chr3:50131308 5'GT 50131308 Upstream 31bp
chr3 50220193 50220193 1 + G A rs565856671 50220185 + 50220165 50220205 41 AGAGGCGCCGCAGAGCCCCGCGGTGTACGCCCGCATCGGGC AGAGGCGCCGCAGAGCCCCGCGGTGTACACCCGCATCGGGC < 41bp 1 0.359615371708964 1 0.804045915603638 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50220185 chr3:50220193 nonsynonymous SNV 0.957 1 29 hm5C_associated_SNPs_4401 0 0 0 0 1 SEMA3F chr3:50220216 5'GT 50220216 Upstream 24bp
chr3 50306760 50306760 1 + G A rs587618842 50306747 + 50306727 50306767 41 GTGGGGCTGGGGAGTGCCGCCCCCAGCCCCCACGCCTTCGG GTGGGGCTGGGGAGTGCCGCCCCCAGCCCCCACACCTTCGG < 41bp 1 0.462950525758882 1 0.491196781396866 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SEMA3B ENSG00000012171;ENSG00000012171 ncRNA_exonic;splicing Human protein_coding chr3:50306747 chr3:50306760 . 0.952 1 34 hm5C_associated_SNPs_4404 0 0 1 0 2 SEMA3B;SEMA3B chr3:50306753 3'AG 50306753 Downstream 8bp
chr3 50306760 50306760 1 + G A rs587618842 50306747 + 50306727 50306767 41 GTGGGGCTGGGGAGTGCCGCCCCCAGCCCCCACGCCTTCGG GTGGGGCTGGGGAGTGCCGCCCCCAGCCCCCACACCTTCGG < 41bp 1 0.462950525758882 1 0.491196781396866 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SEMA3B ENSG00000012171;ENSG00000012171 ncRNA_exonic;splicing Human protein_coding chr3:50306747 chr3:50306760 . 0.952 1 34 hm5C_associated_SNPs_4404 0 0 1 0 2 SEMA3B chr3:50306780 5'GT 50306780 Upstream 21bp
chr3 50306760 50306760 1 + G A rs587618842 50306748 + 50306728 50306768 41 TGGGGCTGGGGAGTGCCGCCCCCAGCCCCCACGCCTTCGGC TGGGGCTGGGGAGTGCCGCCCCCAGCCCCCACACCTTCGGC < 41bp 1 0.241369860771959 1 0.341951906681061 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SEMA3B ENSG00000012171;ENSG00000012171 ncRNA_exonic;splicing Human protein_coding chr3:50306748 chr3:50306760 . 0.952 1 33 hm5C_associated_SNPs_4405 0 0 1 0 2 SEMA3B;SEMA3B chr3:50306753 3'AG 50306753 Downstream 8bp
chr3 50306760 50306760 1 + G A rs587618842 50306748 + 50306728 50306768 41 TGGGGCTGGGGAGTGCCGCCCCCAGCCCCCACGCCTTCGGC TGGGGCTGGGGAGTGCCGCCCCCAGCCCCCACACCTTCGGC < 41bp 1 0.241369860771959 1 0.341951906681061 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SEMA3B ENSG00000012171;ENSG00000012171 ncRNA_exonic;splicing Human protein_coding chr3:50306748 chr3:50306760 . 0.952 1 33 hm5C_associated_SNPs_4405 0 0 1 0 2 SEMA3B chr3:50306780 5'GT 50306780 Upstream 21bp
chr3 50306760 50306760 1 + G A rs587618842 50306749 + 50306729 50306769 41 GGGGCTGGGGAGTGCCGCCCCCAGCCCCCACGCCTTCGGCT GGGGCTGGGGAGTGCCGCCCCCAGCCCCCACACCTTCGGCT < 41bp 1 0.234078876644017 1 0.451379358768463 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SEMA3B ENSG00000012171;ENSG00000012171 ncRNA_exonic;splicing Human protein_coding chr3:50306749 chr3:50306760 . 0.952 1 32 hm5C_associated_SNPs_4406 0 0 1 0 2 SEMA3B;SEMA3B chr3:50306753 3'AG 50306753 Downstream 8bp
chr3 50306760 50306760 1 + G A rs587618842 50306749 + 50306729 50306769 41 GGGGCTGGGGAGTGCCGCCCCCAGCCCCCACGCCTTCGGCT GGGGCTGGGGAGTGCCGCCCCCAGCCCCCACACCTTCGGCT < 41bp 1 0.234078876644017 1 0.451379358768463 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SEMA3B ENSG00000012171;ENSG00000012171 ncRNA_exonic;splicing Human protein_coding chr3:50306749 chr3:50306760 . 0.952 1 32 hm5C_associated_SNPs_4406 0 0 1 0 2 SEMA3B chr3:50306780 5'GT 50306780 Upstream 21bp
chr3 50306760 50306760 1 + G A rs587618842 50306750 + 50306730 50306770 41 GGGCTGGGGAGTGCCGCCCCCAGCCCCCACGCCTTCGGCTC GGGCTGGGGAGTGCCGCCCCCAGCCCCCACACCTTCGGCTC < 41bp 1 0.481074905667324 1 0.410700619220734 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SEMA3B ENSG00000012171;ENSG00000012171 ncRNA_exonic;splicing Human protein_coding chr3:50306750 chr3:50306760 . 0.952 1 31 hm5C_associated_SNPs_4407 0 0 1 0 2 SEMA3B;SEMA3B chr3:50306753 3'AG 50306753 Downstream 8bp
chr3 50306760 50306760 1 + G A rs587618842 50306750 + 50306730 50306770 41 GGGCTGGGGAGTGCCGCCCCCAGCCCCCACGCCTTCGGCTC GGGCTGGGGAGTGCCGCCCCCAGCCCCCACACCTTCGGCTC < 41bp 1 0.481074905667324 1 0.410700619220734 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SEMA3B ENSG00000012171;ENSG00000012171 ncRNA_exonic;splicing Human protein_coding chr3:50306750 chr3:50306760 . 0.952 1 31 hm5C_associated_SNPs_4407 0 0 1 0 2 SEMA3B chr3:50306780 5'GT 50306780 Upstream 21bp
chr3 50306760 50306760 1 + G A rs587618842 50306753 + 50306733 50306773 41 CTGGGGAGTGCCGCCCCCAGCCCCCACGCCTTCGGCTCTCC CTGGGGAGTGCCGCCCCCAGCCCCCACACCTTCGGCTCTCC < 41bp 1 0.165629912910123 1 0.147392421960831 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SEMA3B ENSG00000012171;ENSG00000012171 ncRNA_exonic;splicing Human protein_coding chr3:50306753 chr3:50306760 . 0.952 1 28 hm5C_associated_SNPs_4408 0 0 1 0 2 SEMA3B;SEMA3B chr3:50306753 3'AG 50306753 Downstream 8bp
chr3 50306760 50306760 1 + G A rs587618842 50306753 + 50306733 50306773 41 CTGGGGAGTGCCGCCCCCAGCCCCCACGCCTTCGGCTCTCC CTGGGGAGTGCCGCCCCCAGCCCCCACACCTTCGGCTCTCC < 41bp 1 0.165629912910123 1 0.147392421960831 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SEMA3B ENSG00000012171;ENSG00000012171 ncRNA_exonic;splicing Human protein_coding chr3:50306753 chr3:50306760 . 0.952 1 28 hm5C_associated_SNPs_4408 0 0 1 0 2 SEMA3B chr3:50306780 5'GT 50306780 Upstream 21bp
chr3 50306760 50306760 1 + G A rs587618842 50306754 + 50306734 50306774 41 TGGGGAGTGCCGCCCCCAGCCCCCACGCCTTCGGCTCTCCT TGGGGAGTGCCGCCCCCAGCCCCCACACCTTCGGCTCTCCT < 41bp 1 0.300466700403547 1 0.343337565660477 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SEMA3B ENSG00000012171;ENSG00000012171 ncRNA_exonic;splicing Human protein_coding chr3:50306754 chr3:50306760 . 0.952 1 27 hm5C_associated_SNPs_4409 0 0 1 0 2 SEMA3B;SEMA3B chr3:50306753 3'AG 50306753 Downstream 8bp
chr3 50306760 50306760 1 + G A rs587618842 50306754 + 50306734 50306774 41 TGGGGAGTGCCGCCCCCAGCCCCCACGCCTTCGGCTCTCCT TGGGGAGTGCCGCCCCCAGCCCCCACACCTTCGGCTCTCCT < 41bp 1 0.300466700403547 1 0.343337565660477 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SEMA3B ENSG00000012171;ENSG00000012171 ncRNA_exonic;splicing Human protein_coding chr3:50306754 chr3:50306760 . 0.952 1 27 hm5C_associated_SNPs_4409 0 0 1 0 2 SEMA3B chr3:50306780 5'GT 50306780 Upstream 21bp
chr3 50306760 50306760 1 + G A rs587618842 50306755 + 50306735 50306775 41 GGGGAGTGCCGCCCCCAGCCCCCACGCCTTCGGCTCTCCTT GGGGAGTGCCGCCCCCAGCCCCCACACCTTCGGCTCTCCTT < 41bp 1 0.122465504139856 1 0.189752280712128 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SEMA3B ENSG00000012171;ENSG00000012171 ncRNA_exonic;splicing Human protein_coding chr3:50306755 chr3:50306760 . 0.952 1 26 hm5C_associated_SNPs_4410 0 0 1 0 2 SEMA3B;SEMA3B chr3:50306753 3'AG 50306753 Downstream 8bp
chr3 50306760 50306760 1 + G A rs587618842 50306755 + 50306735 50306775 41 GGGGAGTGCCGCCCCCAGCCCCCACGCCTTCGGCTCTCCTT GGGGAGTGCCGCCCCCAGCCCCCACACCTTCGGCTCTCCTT < 41bp 1 0.122465504139856 1 0.189752280712128 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SEMA3B ENSG00000012171;ENSG00000012171 ncRNA_exonic;splicing Human protein_coding chr3:50306755 chr3:50306760 . 0.952 1 26 hm5C_associated_SNPs_4410 0 0 1 0 2 SEMA3B chr3:50306780 5'GT 50306780 Upstream 21bp
chr3 50683610 50683610 1 + G A rs183396526 50683592 + 50683572 50683612 41 CTTTGTGGCTTCCCACCCTTCTACTCCAACACGGGCCAGGC CTTTGTGGCTTCCCACCCTTCTACTCCAACACGGGCCAAGC < 41bp 1 0.363565826343686 1 0.337861299514771 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50683592 chr3:50683610 synonymous SNV . 0 39 hm5C_associated_SNPs_4411 0 0 1 0 2 MAPKAPK3 chr3:50683571 3'AG 50683571 Downstream 40bp
chr3 50683610 50683610 1 + G A rs183396526 50683592 + 50683572 50683612 41 CTTTGTGGCTTCCCACCCTTCTACTCCAACACGGGCCAGGC CTTTGTGGCTTCCCACCCTTCTACTCCAACACGGGCCAAGC < 41bp 1 0.363565826343686 1 0.337861299514771 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50683592 chr3:50683610 synonymous SNV . 0 39 hm5C_associated_SNPs_4411 0 0 1 0 2 MAPKAPK3 chr3:50683695 5'GT 50683695 Upstream 86bp
chr3 51980281 51980281 1 + C T rs201317730 51980280 + 51980260 51980300 41 GCCATCCTCACTAGTGGGCTCCGCATCATGCCACATTCTGG GCCATCCTCACTAGTGGGCTCTGCATCATGCCACATTCTGG < 41bp 1 0.593432305112766 1 0.453125983476639 experiment 0.813135389774468 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PARP3 ENSG00000041880 CDS Human protein_coding chr3:51980280 chr3:51980281 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_4414 0 0 0 0 2 PARP3 chr3:51980182 3'AG 51980182 Downstream 100bp
chr3 51980281 51980281 1 + C T rs201317730 51980280 + 51980260 51980300 41 GCCATCCTCACTAGTGGGCTCCGCATCATGCCACATTCTGG GCCATCCTCACTAGTGGGCTCTGCATCATGCCACATTCTGG < 41bp 1 0.593432305112766 1 0.453125983476639 experiment 0.813135389774468 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PARP3 ENSG00000041880 CDS Human protein_coding chr3:51980280 chr3:51980281 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_4414 0 0 0 0 2 PARP3 chr3:51980359 5'GT 51980359 Upstream 79bp
chr3 52011906 52011906 1 + T G rs148342997 52011901 + 52011881 52011921 41 CTCCAGACTGTGGTACAGACCTCCATGAGCCGGTCCCAGGT CTCCAGACTGTGGTACAGACCTCCAGGAGCCGGTCCCAGGT < 41bp 1 0.794544945021252 1 0.983060956001282 experiment 0.410910109957497 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control ABHD14A ENSG00000114786;ENSG00000248487 CDS Human other chr3:52011901 chr3:52011906 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_4415 0 0 1 0 1 ABHD14A chr3:52011887 3'AG 52011887 Downstream 20bp
chr3 52011912 52011912 1 + G A rs17849626 52011901 + 52011881 52011921 41 CTCCAGACTGTGGTACAGACCTCCATGAGCCGGTCCCAGGT CTCCAGACTGTGGTACAGACCTCCATGAGCCAGTCCCAGGT < 41bp 1 0.785751475862633 1 0.988485038280487 experiment 0.428497048274733 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control ABHD14A ENSG00000114786;ENSG00000248487 CDS Human other chr3:52011901 chr3:52011912 nonsynonymous SNV 0.985 2 32 hm5C_associated_SNPs_4416 0 0 1 0 1 ABHD14A chr3:52011887 3'AG 52011887 Downstream 26bp
chr3 52014897 52014897 1 + C G rs61729088 52014890 + 52014870 52014910 41 TATGGAGAGCTGGACCACATCCTGGCTCGAGAGTCACTGCG TATGGAGAGCTGGACCACATCCTGGCTGGAGAGTCACTGCG < 41bp 1 0.453746317824881 1 0.428369373083115 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ABHD14A ENSG00000248487 CDS Human protein_coding chr3:52014890 chr3:52014897 nonsynonymous SNV 0.741 0 28 hm5C_associated_SNPs_4417 0 0 1 0 1 ABHD14A chr3:52014852 3'AG 52014852 Downstream 46bp
chr3 52014907 52014907 1 + T G rs34149506 52014890 + 52014870 52014910 41 TATGGAGAGCTGGACCACATCCTGGCTCGAGAGTCACTGCG TATGGAGAGCTGGACCACATCCTGGCTCGAGAGTCACGGCG < 41bp 1 0.467548150240906 1 0.602752864360809 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ABHD14A ENSG00000248487 CDS Human protein_coding chr3:52014890 chr3:52014907 nonsynonymous SNV 0.826 2 38 hm5C_associated_SNPs_4418 0 0 1 0 1 ABHD14A chr3:52014852 3'AG 52014852 Downstream 56bp
chr3 52014910 52014910 1 + G A rs201197998 52014890 + 52014870 52014910 41 TATGGAGAGCTGGACCACATCCTGGCTCGAGAGTCACTGCG TATGGAGAGCTGGACCACATCCTGGCTCGAGAGTCACTGCA < 41bp 1 0.423969442100243 1 0.501756608486176 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ABHD14A ENSG00000248487 CDS Human protein_coding chr3:52014890 chr3:52014910 nonsynonymous SNV 0.786 0 41 hm5C_associated_SNPs_4419 0 0 1 0 1 ABHD14A chr3:52014852 3'AG 52014852 Downstream 59bp
chr3 52233264 52233264 1 + A G rs150932815 52233278 + 52233258 52233298 41 ATGGAGAGTGTTGTTCGCCGCTGCCCATTCTTATCCCGAGT ATGGAGGGTGTTGTTCGCCGCTGCCCATTCTTATCCCGAGT < 41bp 1 0.31088807073709 1 0.207776248455048 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233278 chr3:52233264 nonsynonymous SNV 0.991 2 7 hm5C_associated_SNPs_4420 0 0 1 0 2 ALAS1 chr3:52233226 3'AG 52233226 Downstream 39bp
chr3 52233264 52233264 1 + A G rs150932815 52233278 + 52233258 52233298 41 ATGGAGAGTGTTGTTCGCCGCTGCCCATTCTTATCCCGAGT ATGGAGGGTGTTGTTCGCCGCTGCCCATTCTTATCCCGAGT < 41bp 1 0.31088807073709 1 0.207776248455048 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233278 chr3:52233264 nonsynonymous SNV 0.991 2 7 hm5C_associated_SNPs_4420 0 0 1 0 2 ALAS1 chr3:52233237 3'AG 52233237 Downstream 28bp
chr3 52233295 52233295 1 + G A rs35338461 52233278 + 52233258 52233298 41 ATGGAGAGTGTTGTTCGCCGCTGCCCATTCTTATCCCGAGT ATGGAGAGTGTTGTTCGCCGCTGCCCATTCTTATCCCAAGT < 41bp 1 0.321924047081166 1 0.316384851932526 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233278 chr3:52233295 nonsynonymous SNV 0.995 2 38 hm5C_associated_SNPs_4421 0 0 1 0 2 ALAS1 chr3:52233226 3'AG 52233226 Downstream 70bp
chr3 52233295 52233295 1 + G A rs35338461 52233278 + 52233258 52233298 41 ATGGAGAGTGTTGTTCGCCGCTGCCCATTCTTATCCCGAGT ATGGAGAGTGTTGTTCGCCGCTGCCCATTCTTATCCCAAGT < 41bp 1 0.321924047081166 1 0.316384851932526 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233278 chr3:52233295 nonsynonymous SNV 0.995 2 38 hm5C_associated_SNPs_4421 0 0 1 0 2 ALAS1 chr3:52233237 3'AG 52233237 Downstream 59bp
chr3 52237928 52237928 1 + T C rs199507022 52237938 + 52237918 52237958 41 TGAAAACCGATGGAGGGGATCCCAGTGGACTGCTGAAGAAC TGAAAACCGACGGAGGGGATCCCAGTGGACTGCTGAAGAAC < 41bp 1 0.372471349642954 1 0.153579235076904 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52237938 chr3:52237928 synonymous SNV . 0 11 hm5C_associated_SNPs_4424 0 0 1 0 1 ALAS1 chr3:52237879 3'AG 52237879 Downstream 50bp
chr3 52325039 52325039 1 + G A rs35976326 52325038 + 52325018 52325058 41 GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG GGGTGCGGAGGACAACCTCCCAGACCGCGATGCGCTGCGGG < 41bp 1 0.510271893815527 1 0.493677467107773 experiment 0.979456212368946 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52325038 chr3:52325039 synonymous SNV . 0 22 hm5C_associated_SNPs_4425 0 0 1 0 2 GLYCTK chr3:52324976 3'AG 52324976 Downstream 64bp
chr3 52325039 52325039 1 + G A rs35976326 52325038 + 52325018 52325058 41 GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG GGGTGCGGAGGACAACCTCCCAGACCGCGATGCGCTGCGGG < 41bp 1 0.510271893815527 1 0.493677467107773 experiment 0.979456212368946 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52325038 chr3:52325039 synonymous SNV . 0 22 hm5C_associated_SNPs_4425 0 0 1 0 2 GLYCTK chr3:52325127 5'GT 52325127 Upstream 89bp
chr3 52325051 52325051 1 + G A rs9831689 52325038 + 52325018 52325058 41 GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG GGGTGCGGAGGACAACCTCCCGGACCGCGATGCACTGCGGG < 41bp 1 0.526799119337723 1 0.752276539802551 experiment 0.946401761324553 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52325038 chr3:52325051 synonymous SNV . 0 34 hm5C_associated_SNPs_4426 0 0 1 0 2 GLYCTK chr3:52324976 3'AG 52324976 Downstream 76bp
chr3 52325051 52325051 1 + G A rs9831689 52325038 + 52325018 52325058 41 GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG GGGTGCGGAGGACAACCTCCCGGACCGCGATGCACTGCGGG < 41bp 1 0.526799119337723 1 0.752276539802551 experiment 0.946401761324553 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52325038 chr3:52325051 synonymous SNV . 0 34 hm5C_associated_SNPs_4426 0 0 1 0 2 GLYCTK chr3:52325127 5'GT 52325127 Upstream 77bp
chr3 52325055 52325055 1 + C T rs199906865 52325038 + 52325018 52325058 41 GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGTGGG < 41bp 1 0.528955027934004 1 0.736283481121063 experiment 0.942089944131993 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52325038 chr3:52325055 nonsynonymous SNV 0.004 3 38 hm5C_associated_SNPs_4427 0 0 1 0 2 GLYCTK chr3:52324976 3'AG 52324976 Downstream 80bp
chr3 52325055 52325055 1 + C T rs199906865 52325038 + 52325018 52325058 41 GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGTGGG < 41bp 1 0.528955027934004 1 0.736283481121063 experiment 0.942089944131993 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52325038 chr3:52325055 nonsynonymous SNV 0.004 3 38 hm5C_associated_SNPs_4427 0 0 1 0 2 GLYCTK chr3:52325127 5'GT 52325127 Upstream 73bp
chr3 57898184 57898184 1 + T C rs554868355 57898199 + 57898179 57898219 41 AGAGATGAATTGCTTAGTGCCCGAGATGAAATTTTGCTCCT AGAGACGAATTGCTTAGTGCCCGAGATGAAATTTTGCTCCT < 41bp 1 0.531532343324475 1 0.69355046749115 experiment 0.93693531335105 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLMAP ENSG00000163681 CDS Human protein_coding chr3:57898199 chr3:57898184 synonymous SNV . 0 6 hm5C_associated_SNPs_4429 0 0 1 0 1 SLMAP chr3:57898108 3'AG 57898108 Downstream 77bp
chr3 58067436 58067436 1 + C T rs111433950 58067455 + 58067435 58067475 41 CCAAGCTCAAGCCGGGGGCTCCTCTCAAACCCAAACTCAAC CTAAGCTCAAGCCGGGGGCTCCTCTCAAACCCAAACTCAAC < 41bp 1 0.0156858980953096 1 0.0678444504737854 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58067455 chr3:58067436 synonymous SNV . 0 2 hm5C_associated_SNPs_4432 1 0 1 0 2 FLNB chr3:58067356 3'AG 58067356 Downstream 81bp
chr3 58067436 58067436 1 + C T rs111433950 58067455 + 58067435 58067475 41 CCAAGCTCAAGCCGGGGGCTCCTCTCAAACCCAAACTCAAC CTAAGCTCAAGCCGGGGGCTCCTCTCAAACCCAAACTCAAC < 41bp 1 0.0156858980953096 1 0.0678444504737854 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58067455 chr3:58067436 synonymous SNV . 0 2 hm5C_associated_SNPs_4432 1 0 1 0 2 FLNB chr3:58067503 5'GT 58067503 Upstream 68bp
chr3 58067436 58067436 1 + C T rs111433950 58067456 + 58067436 58067476 41 CAAGCTCAAGCCGGGGGCTCCTCTCAAACCCAAACTCAACC TAAGCTCAAGCCGGGGGCTCCTCTCAAACCCAAACTCAACC < 41bp 1 0.0518128660244948 1 0.272881329059601 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58067456 chr3:58067436 synonymous SNV . 0 1 hm5C_associated_SNPs_4433 1 0 1 0 2 FLNB chr3:58067356 3'AG 58067356 Downstream 81bp
chr3 58067436 58067436 1 + C T rs111433950 58067456 + 58067436 58067476 41 CAAGCTCAAGCCGGGGGCTCCTCTCAAACCCAAACTCAACC TAAGCTCAAGCCGGGGGCTCCTCTCAAACCCAAACTCAACC < 41bp 1 0.0518128660244948 1 0.272881329059601 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58067456 chr3:58067436 synonymous SNV . 0 1 hm5C_associated_SNPs_4433 1 0 1 0 2 FLNB chr3:58067503 5'GT 58067503 Upstream 68bp
chr3 58092578 58092578 1 + C T rs62621999 58092593 + 58092573 58092613 41 AGCCACGGGAGGCTACAACCCTGATCTGGTGAATCAGCTGC AGCCATGGGAGGCTACAACCCTGATCTGGTGAATCAGCTGC < 41bp 1 0.389674697027499 1 0.358109205961227 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58092593 chr3:58092578 nonsynonymous SNV 0.393 1 6 hm5C_associated_SNPs_4434 1 0 1 0 1 FLNB chr3:58092600 5'GT 58092600 Upstream 23bp
chr3 58092578 58092578 1 + C T rs62621999 58092598 + 58092578 58092618 41 CGGGAGGCTACAACCCTGATCTGGTGAATCAGCTGCTGTGC TGGGAGGCTACAACCCTGATCTGGTGAATCAGCTGCTGTGC < 41bp 1 0.513362028857744 1 0.258530467748642 experiment 0.973275942284512 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58092598 chr3:58092578 nonsynonymous SNV 0.393 1 1 hm5C_associated_SNPs_4435 1 0 1 0 1 FLNB chr3:58092600 5'GT 58092600 Upstream 23bp
chr3 58092589 58092589 1 + A C rs146859540 58092593 + 58092573 58092613 41 AGCCACGGGAGGCTACAACCCTGATCTGGTGAATCAGCTGC AGCCACGGGAGGCTACCACCCTGATCTGGTGAATCAGCTGC < 41bp 1 0.357738138134036 1 0.248545110225677 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58092593 chr3:58092589 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_4436 0 0 1 0 1 FLNB chr3:58092600 5'GT 58092600 Upstream 12bp
chr3 58092589 58092589 1 + A C rs146859540 58092598 + 58092578 58092618 41 CGGGAGGCTACAACCCTGATCTGGTGAATCAGCTGCTGTGC CGGGAGGCTACCACCCTGATCTGGTGAATCAGCTGCTGTGC < 41bp 1 0.56449683926861 1 0.259912252426147 experiment 0.87100632146278 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58092598 chr3:58092589 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_4437 0 0 1 0 1 FLNB chr3:58092600 5'GT 58092600 Upstream 12bp
chr3 58097556 58097556 1 + T G rs376893941 58097553 + 58097533 58097573 41 CCTTTCAGAGTCAAAGTTGACCCTTCCCACGATGCCAGCAA CCTTTCAGAGTCAAAGTTGACCCGTCCCACGATGCCAGCAA < 41bp 1 0.239325436221197 1 0.138468414545059 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58097553 chr3:58097556 synonymous SNV . 0 24 hm5C_associated_SNPs_4438 1 0 1 0 2 FLNB chr3:58097518 3'AG 58097518 Downstream 39bp
chr3 58097556 58097556 1 + T G rs376893941 58097553 + 58097533 58097573 41 CCTTTCAGAGTCAAAGTTGACCCTTCCCACGATGCCAGCAA CCTTTCAGAGTCAAAGTTGACCCGTCCCACGATGCCAGCAA < 41bp 1 0.239325436221197 1 0.138468414545059 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58097553 chr3:58097556 synonymous SNV . 0 24 hm5C_associated_SNPs_4438 1 0 1 0 2 FLNB chr3:58097608 5'GT 58097608 Upstream 53bp
chr3 58097556 58097556 1 + T G rs376893941 58097554 + 58097534 58097574 41 CTTTCAGAGTCAAAGTTGACCCTTCCCACGATGCCAGCAAA CTTTCAGAGTCAAAGTTGACCCGTCCCACGATGCCAGCAAA < 41bp 1 0.0302380239659586 1 0.446276485919952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58097554 chr3:58097556 synonymous SNV . 0 23 hm5C_associated_SNPs_4439 1 0 1 0 2 FLNB chr3:58097518 3'AG 58097518 Downstream 39bp
chr3 58097556 58097556 1 + T G rs376893941 58097554 + 58097534 58097574 41 CTTTCAGAGTCAAAGTTGACCCTTCCCACGATGCCAGCAAA CTTTCAGAGTCAAAGTTGACCCGTCCCACGATGCCAGCAAA < 41bp 1 0.0302380239659586 1 0.446276485919952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58097554 chr3:58097556 synonymous SNV . 0 23 hm5C_associated_SNPs_4439 1 0 1 0 2 FLNB chr3:58097608 5'GT 58097608 Upstream 53bp
chr3 58097556 58097556 1 + T G rs376893941 58097558 + 58097538 58097578 41 CAGAGTCAAAGTTGACCCTTCCCACGATGCCAGCAAAGTGA CAGAGTCAAAGTTGACCCGTCCCACGATGCCAGCAAAGTGA < 41bp 1 0.0288242196215927 1 0.173958629369736 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58097558 chr3:58097556 synonymous SNV . 0 19 hm5C_associated_SNPs_4440 1 0 1 0 2 FLNB chr3:58097518 3'AG 58097518 Downstream 39bp
chr3 58097556 58097556 1 + T G rs376893941 58097558 + 58097538 58097578 41 CAGAGTCAAAGTTGACCCTTCCCACGATGCCAGCAAAGTGA CAGAGTCAAAGTTGACCCGTCCCACGATGCCAGCAAAGTGA < 41bp 1 0.0288242196215927 1 0.173958629369736 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58097558 chr3:58097556 synonymous SNV . 0 19 hm5C_associated_SNPs_4440 1 0 1 0 2 FLNB chr3:58097608 5'GT 58097608 Upstream 53bp
chr3 58097556 58097556 1 + T G rs376893941 58097560 + 58097540 58097580 41 GAGTCAAAGTTGACCCTTCCCACGATGCCAGCAAAGTGAAG GAGTCAAAGTTGACCCGTCCCACGATGCCAGCAAAGTGAAG < 41bp 1 0.652629725942173 1 0.156654626131058 experiment 0.694740548115655 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58097560 chr3:58097556 synonymous SNV . 0 17 hm5C_associated_SNPs_4441 1 0 1 0 2 FLNB chr3:58097518 3'AG 58097518 Downstream 39bp
chr3 58097556 58097556 1 + T G rs376893941 58097560 + 58097540 58097580 41 GAGTCAAAGTTGACCCTTCCCACGATGCCAGCAAAGTGAAG GAGTCAAAGTTGACCCGTCCCACGATGCCAGCAAAGTGAAG < 41bp 1 0.652629725942173 1 0.156654626131058 experiment 0.694740548115655 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58097560 chr3:58097556 synonymous SNV . 0 17 hm5C_associated_SNPs_4441 1 0 1 0 2 FLNB chr3:58097608 5'GT 58097608 Upstream 53bp
chr3 58112440 58112440 1 + A G rs2362903 58112439 + 58112419 58112459 41 TGCTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTA TGCTGAGTACATTCCTTTCGCGCCGGGGGATTACGATGTTA < 41bp 1 0.505898276024337 1 0.194136768579483 experiment 0.988203447951325 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112439 chr3:58112440 synonymous SNV . 0 22 hm5C_associated_SNPs_4442 2 0 1 0 1 FLNB chr3:58112489 5'GT 58112489 Upstream 50bp
chr3 58112440 58112440 1 + A G rs2362903 58112441 + 58112421 58112461 41 CTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAAT CTGAGTACATTCCTTTCGCGCCGGGGGATTACGATGTTAAT < 41bp 1 0.169489164102487 1 0.375142216682434 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112441 chr3:58112440 synonymous SNV . 0 20 hm5C_associated_SNPs_4443 2 0 1 0 1 FLNB chr3:58112489 5'GT 58112489 Upstream 50bp
chr3 58112440 58112440 1 + A G rs2362903 58112442 + 58112422 58112462 41 TGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAATA TGAGTACATTCCTTTCGCGCCGGGGGATTACGATGTTAATA < 41bp 1 0.387542809185219 1 0.8094322681427 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112442 chr3:58112440 synonymous SNV . 0 19 hm5C_associated_SNPs_4444 2 0 1 0 1 FLNB chr3:58112489 5'GT 58112489 Upstream 50bp
chr3 62229553 62229553 1 + C T rs1352882 62229569 + 62229549 62229589 41 GTATCCCTATTATTCCTATTCCGGGTAAGTAAGACACTGCT GTATTCCTATTATTCCTATTCCGGGTAAGTAAGACACTGCT < 41bp 1 0.224875813358384 1 0.898061871528625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:62229569 chr3:62229553 synonymous SNV . 0 5 hm5C_associated_SNPs_4446 0 0 0 0 2 PTPRG chr3:62229481 3'AG 62229481 Downstream 73bp
chr3 62229553 62229553 1 + C T rs1352882 62229569 + 62229549 62229589 41 GTATCCCTATTATTCCTATTCCGGGTAAGTAAGACACTGCT GTATTCCTATTATTCCTATTCCGGGTAAGTAAGACACTGCT < 41bp 1 0.224875813358384 1 0.898061871528625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:62229569 chr3:62229553 synonymous SNV . 0 5 hm5C_associated_SNPs_4446 0 0 0 0 2 PTPRG chr3:62229572 5'GT 62229572 Upstream 20bp
chr3 63898266 63898266 1 + G A rs547615608 63898267 + 63898247 63898287 41 TTTTTGTTACATTGTAGGAGCGGAAAGAATGTCGGAGCGGG TTTTTGTTACATTGTAGGAACGGAAAGAATGTCGGAGCGGG < 41bp 1 0.699153019934991 1 0.221601933240891 experiment 0.601693960130019 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATXN7 ENSG00000163635 UTR5 Human protein_coding chr3:63898267 chr3:63898266 . . 0 20 hm5C_associated_SNPs_4449 0 0 1 0 1 ATXN7 chr3:63898264 3'AG 63898264 Downstream 3bp
chr3 66419942 66419942 1 + A G rs1129179 66419929 + 66419909 66419949 41 TGCCGCTGCAGTCACCACCCCTCTAGACGTGGCAAAGACAA TGCCGCTGCAGTCACCACCCCTCTAGACGTGGCGAAGACAA < 41bp 1 0.43377064321731 1 0.891325235366821 experiment 1 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control SLC25A26 ENSG00000144741 CDS Human protein_coding chr3:66419929 chr3:66419942 synonymous SNV . 0 34 hm5C_associated_SNPs_4450 0 0 1 0 2 SLC25A26 chr3:66419902 3'AG 66419902 Downstream 41bp
chr3 66419942 66419942 1 + A G rs1129179 66419929 + 66419909 66419949 41 TGCCGCTGCAGTCACCACCCCTCTAGACGTGGCAAAGACAA TGCCGCTGCAGTCACCACCCCTCTAGACGTGGCGAAGACAA < 41bp 1 0.43377064321731 1 0.891325235366821 experiment 1 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control SLC25A26 ENSG00000144741 CDS Human protein_coding chr3:66419929 chr3:66419942 synonymous SNV . 0 34 hm5C_associated_SNPs_4450 0 0 1 0 2 SLC25A26 chr3:66419966 5'GT 66419966 Upstream 25bp
chr3 66430819 66430819 1 - C T rs140433888 66430812 - 66430792 66430832 41 GTCCAGAGCGCGCGGAAGCCCAGTACTTGCTTGTTTCCAAT GTCCAGAGCGCGCAGAAGCCCAGTACTTGCTTGTTTCCAAT < 41bp 1 0.477347930386128 1 0.0953966677188873 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430812 chr3:66430819 synonymous SNV . 0 14 hm5C_associated_SNPs_4457 0 0 0 0 1 LRIG1 chr3:66430913 3'AG 66430913 Downstream 95bp
chr3 66430822 66430822 1 - G A rs138156364 66430812 - 66430792 66430832 41 GTCCAGAGCGCGCGGAAGCCCAGTACTTGCTTGTTTCCAAT GTCCAGAGCGTGCGGAAGCCCAGTACTTGCTTGTTTCCAAT < 41bp 1 0.549179973108429 1 0.248884528875351 experiment 0.901640053783141 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430812 chr3:66430822 synonymous SNV . 0 11 hm5C_associated_SNPs_4458 0 0 0 0 1 LRIG1 chr3:66430913 3'AG 66430913 Downstream 92bp
chr3 66430823 66430823 1 - C T rs572487143 66430812 - 66430792 66430832 41 GTCCAGAGCGCGCGGAAGCCCAGTACTTGCTTGTTTCCAAT GTCCAGAGCACGCGGAAGCCCAGTACTTGCTTGTTTCCAAT < 41bp 1 0.494989296334008 1 0.25106805562973 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430812 chr3:66430823 nonsynonymous SNV 0.000 0 10 hm5C_associated_SNPs_4459 0 0 0 0 1 LRIG1 chr3:66430913 3'AG 66430913 Downstream 91bp
chr3 66430870 66430870 1 - G A rs61754218 66430873 - 66430853 66430893 41 GCAAGGTTGTATCACCCGGACTCCACAGAGCTACAGCCTGC GCAAGGTTGTATCACCCGGACTCTACAGAGCTACAGCCTGC < 41bp 1 0.329221479813591 1 0.204283863306046 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430873 chr3:66430870 synonymous SNV . 0 24 hm5C_associated_SNPs_4460 0 0 1 0 1 LRIG1 chr3:66430913 3'AG 66430913 Downstream 44bp
chr3 66430877 66430877 1 - G A rs332374 66430873 - 66430853 66430893 41 GCAAGGTTGTATCACCCGGACTCCACAGAGCTACAGCCTGC GCAAGGTTGTATCACCTGGACTCCACAGAGCTACAGCCTGC < 41bp 1 0.613048709501618 1 0.465258061885834 experiment 0.773902580996764 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430873 chr3:66430877 nonsynonymous SNV 0.001 0 17 hm5C_associated_SNPs_4461 0 0 1 0 1 LRIG1 chr3:66430913 3'AG 66430913 Downstream 37bp
chr3 73113180 73113180 1 + C T rs2306983 73113185 + 73113165 73113205 41 ATGGGCCTGGGACACCCAGGCCACTTAATCGACCAAAGGTT ATGGGCCTGGGACACTCAGGCCACTTAATCGACCAAAGGTT < 41bp 1 0.161960187371509 1 0.153119742870331 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP4R2 ENSG00000163605 CDS Human protein_coding chr3:73113185 chr3:73113180 nonsynonymous SNV 0.998 4 16 hm5C_associated_SNPs_4462 0 0 1 0 1 PPP4R2 chr3:73113154 3'AG 73113154 Downstream 27bp
chr3 73113180 73113180 1 + C T rs2306983 73113186 + 73113166 73113206 41 TGGGCCTGGGACACCCAGGCCACTTAATCGACCAAAGGTTT TGGGCCTGGGACACTCAGGCCACTTAATCGACCAAAGGTTT < 41bp 1 0.13261055085497 1 0.0331465601921082 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP4R2 ENSG00000163605 CDS Human protein_coding chr3:73113186 chr3:73113180 nonsynonymous SNV 0.998 4 15 hm5C_associated_SNPs_4463 0 0 1 0 1 PPP4R2 chr3:73113154 3'AG 73113154 Downstream 27bp
chr3 73113187 73113187 1 + A G rs9823669 73113185 + 73113165 73113205 41 ATGGGCCTGGGACACCCAGGCCACTTAATCGACCAAAGGTT ATGGGCCTGGGACACCCAGGCCGCTTAATCGACCAAAGGTT < 41bp 1 0.228353721323626 1 0.341462641954422 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP4R2 ENSG00000163605 CDS Human protein_coding chr3:73113185 chr3:73113187 synonymous SNV . 0 23 hm5C_associated_SNPs_4464 0 0 1 0 1 PPP4R2 chr3:73113154 3'AG 73113154 Downstream 34bp
chr3 73113187 73113187 1 + A G rs9823669 73113186 + 73113166 73113206 41 TGGGCCTGGGACACCCAGGCCACTTAATCGACCAAAGGTTT TGGGCCTGGGACACCCAGGCCGCTTAATCGACCAAAGGTTT < 41bp 1 0.159145211123009 1 0.0820370316505432 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP4R2 ENSG00000163605 CDS Human protein_coding chr3:73113186 chr3:73113187 synonymous SNV . 0 22 hm5C_associated_SNPs_4465 0 0 1 0 1 PPP4R2 chr3:73113154 3'AG 73113154 Downstream 34bp
chr3 99897169 99897169 1 + A C rs575019956 99897188 + 99897168 99897208 41 AACTTCTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGAA ACCTTCTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGAA < 41bp 1 0.24983763705001 1 0.133858054876328 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMSS1 ENSG00000184220 CDS Human protein_coding chr3:99897188 chr3:99897169 nonsynonymous SNV 0.999 1 2 hm5C_associated_SNPs_4466 0 0 1 0 1 CMSS1 chr3:99897149 3'AG 99897149 Downstream 21bp
chr3 101498082 101498082 1 + G A rs151220139 101498099 + 101498079 101498119 41 GCGGGGGGCTAGCGGCCTGGCGCTGCGGCGACCGACCGGGG GCGAGGGGCTAGCGGCCTGGCGCTGCGGCGACCGACCGGGG < 41bp 1 0.728952611546147 1 0.579843699932098 experiment 0.542094776907706 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NXPE3 ENSG00000144815 UTR5 Human protein_coding chr3:101498099 chr3:101498082 . . 0 4 hm5C_associated_SNPs_4471 0 0 1 0 1 NXPE3 chr3:101498168 5'GT 101498168 Upstream 87bp
chr3 101498114 101498114 1 + C A rs555572749 101498099 + 101498079 101498119 41 GCGGGGGGCTAGCGGCCTGGCGCTGCGGCGACCGACCGGGG GCGGGGGGCTAGCGGCCTGGCGCTGCGGCGACCGAACGGGG < 41bp 1 0.697236002562279 1 0.515259563922882 experiment 0.605527994875441 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NXPE3 ENSG00000144815 UTR5 Human protein_coding chr3:101498099 chr3:101498114 . . 0 36 hm5C_associated_SNPs_4472 0 0 1 0 1 NXPE3 chr3:101498168 5'GT 101498168 Upstream 55bp
chr3 108353746 108353746 1 + G A rs200630414 108353763 + 108353743 108353783 41 AAAGTTGCTGTGTTTATTTCCATAAAATTTGCTGGAAAAAG AAAATTGCTGTGTTTATTTCCATAAAATTTGCTGGAAAAAG < 41bp 1 0.152973852025991 1 0.44898796081543 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108353763 chr3:108353746 nonsynonymous SNV 0.999 0 4 hm5C_associated_SNPs_4473 0 0 0 0 1 DZIP3 chr3:108353819 5'GT 108353819 Upstream 74bp
chr3 111705816 111705816 1 + G A rs145014452 111705815 + 111705795 111705835 41 TGCTTCATGCTGCAATTGCACGACCAGAGAAGGTCGTGGCT TGCTTCATGCTGCAATTGCACAACCAGAGAAGGTCGTGGCT < 41bp 1 0.449399868204712 1 0.0729077756404877 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111705815 chr3:111705816 nonsynonymous SNV 0.452 1 22 hm5C_associated_SNPs_4474 0 0 0 0 2 ABHD10 chr3:111705761 3'AG 111705761 Downstream 56bp
chr3 111705816 111705816 1 + G A rs145014452 111705815 + 111705795 111705835 41 TGCTTCATGCTGCAATTGCACGACCAGAGAAGGTCGTGGCT TGCTTCATGCTGCAATTGCACAACCAGAGAAGGTCGTGGCT < 41bp 1 0.449399868204712 1 0.0729077756404877 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111705815 chr3:111705816 nonsynonymous SNV 0.452 1 22 hm5C_associated_SNPs_4474 0 0 0 0 2 ABHD10 chr3:111705898 5'GT 111705898 Upstream 83bp
chr3 112713992 112713992 1 + A C rs148441248 112714008 + 112713988 112714028 41 ACAAAGAAAATGAATTTTTTCAAAGTTGGAAAACATTTTAC ACAACGAAAATGAATTTTTTCAAAGTTGGAAAACATTTTAC < 41bp 1 0.567845973798905 1 0.800873160362244 experiment 0.86430805240219 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTPBP8 ENSG00000163607 CDS Human protein_coding chr3:112714008 chr3:112713992 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_4475 0 0 1 0 1 GTPBP8 chr3:112713982 3'AG 112713982 Downstream 11bp
chr3 113775921 113775921 1 + A G rs117024146 113775934 + 113775914 113775954 41 TGAGATAAAAGGGCCCCTTTCGACTAGCCTCTGCTGAAAGG TGAGATAGAAGGGCCCCTTTCGACTAGCCTCTGCTGAAAGG < 41bp 1 0.44187191059763 1 0.67712938785553 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient QTRT2 ENSG00000151576 UTR5 Human protein_coding chr3:113775934 chr3:113775921 . . 0 8 hm5C_associated_SNPs_4477 0 0 1 0 1 QTRT2 chr3:113775953 5'GT 113775953 Upstream 33bp
chr3 113784173 113784173 1 + A T rs569754989 113784180 + 113784160 113784200 41 ACCTGGGCAAAACAGGGGACCACACCATGGATATTCCAGGC ACCTGGGCAAAACTGGGGACCACACCATGGATATTCCAGGC < 41bp 1 0.260945254862976 1 0.304240733385086 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QTRT2 ENSG00000151576 CDS Human protein_coding chr3:113784180 chr3:113784173 synonymous SNV . 0 14 hm5C_associated_SNPs_4478 0 0 1 0 1 QTRT2 chr3:113784084 3'AG 113784084 Downstream 90bp
chr3 125694426 125694426 1 + G A rs148020640 125694437 + 125694417 125694457 41 CCCTGTCCCGTGGAGAGACGCCTCCGGTGAGAGAGCGGTCT CCCTGTCCCATGGAGAGACGCCTCCGGTGAGAGAGCGGTCT < 41bp 1 0.108926958118693 1 0.060065746307373 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ROPN1B ENSG00000114547 CDS Human protein_coding chr3:125694437 chr3:125694426 nonsynonymous SNV 0.158 0 10 hm5C_associated_SNPs_4488 0 0 0 0 1 ROPN1B chr3:125694523 5'GT 125694523 Upstream 98bp
chr3 125694457 125694457 1 + T C rs61736423 125694437 + 125694417 125694457 41 CCCTGTCCCGTGGAGAGACGCCTCCGGTGAGAGAGCGGTCT CCCTGTCCCGTGGAGAGACGCCTCCGGTGAGAGAGCGGTCC < 41bp 1 0.153525784801155 1 0.0931991040706635 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ROPN1B ENSG00000114547 CDS Human protein_coding chr3:125694437 chr3:125694457 synonymous SNV . 0 41 hm5C_associated_SNPs_4489 0 0 0 0 1 ROPN1B chr3:125694523 5'GT 125694523 Upstream 67bp
chr3 126725013 126725013 1 + C T rs61744428 126725001 + 126724981 126725021 41 TCTGTGGACTTCGTCTTCTACAACTGCAGCGTCCACCAGTC TCTGTGGACTTCGTCTTCTACAACTGCAGCGTTCACCAGTC < 41bp 1 0.274159827682311 1 0.282576471567154 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126725001 chr3:126725013 synonymous SNV . 0 33 hm5C_associated_SNPs_4496 0 0 1 0 2 PLXNA1 chr3:126724922 3'AG 126724922 Downstream 92bp
chr3 126725013 126725013 1 + C T rs61744428 126725001 + 126724981 126725021 41 TCTGTGGACTTCGTCTTCTACAACTGCAGCGTCCACCAGTC TCTGTGGACTTCGTCTTCTACAACTGCAGCGTTCACCAGTC < 41bp 1 0.274159827682311 1 0.282576471567154 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126725001 chr3:126725013 synonymous SNV . 0 33 hm5C_associated_SNPs_4496 0 0 1 0 2 PLXNA1 chr3:126725021 5'GT 126725021 Upstream 9bp
chr3 127323806 127323806 1 + C T rs2307312 127323809 + 127323789 127323829 41 GAGCGGGCCACGGAGGACGGCGAGGAGGACGAGGAGATGAT GAGCGGGCCACGGAGGATGGCGAGGAGGACGAGGAGATGAT < 41bp 1 0.752009589384026 1 0.747688829898834 experiment 0.495980821231948 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127323809 chr3:127323806 synonymous SNV . 0 18 hm5C_associated_SNPs_4499 0 0 1 0 2 MCM2 chr3:127323720 3'AG 127323720 Downstream 87bp
chr3 127323806 127323806 1 + C T rs2307312 127323809 + 127323789 127323829 41 GAGCGGGCCACGGAGGACGGCGAGGAGGACGAGGAGATGAT GAGCGGGCCACGGAGGATGGCGAGGAGGACGAGGAGATGAT < 41bp 1 0.752009589384026 1 0.747688829898834 experiment 0.495980821231948 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127323809 chr3:127323806 synonymous SNV . 0 18 hm5C_associated_SNPs_4499 0 0 1 0 2 MCM2 chr3:127323739 3'AG 127323739 Downstream 68bp
chr3 127340583 127340583 1 + C A rs6794323 127340602 + 127340582 127340622 41 ACCTGAAAAGGAAAATGATCCTGCAGCAGTTCTGAGGCCCT AACTGAAAAGGAAAATGATCCTGCAGCAGTTCTGAGGCCCT < 41bp 1 0.570421235901482 1 0.874672174453735 experiment 0.859157528197037 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127340602 chr3:127340583 nonsynonymous SNV 0.993 4 2 hm5C_associated_SNPs_4500 0 0 1 0 1 MCM2 chr3:127340506 3'AG 127340506 Downstream 78bp
chr3 127340590 127340590 1 + A C rs142055220 127340602 + 127340582 127340622 41 ACCTGAAAAGGAAAATGATCCTGCAGCAGTTCTGAGGCCCT ACCTGAAACGGAAAATGATCCTGCAGCAGTTCTGAGGCCCT < 41bp 1 0.635219876296334 1 0.854683399200439 experiment 0.729560247407331 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127340602 chr3:127340590 synonymous SNV . 0 9 hm5C_associated_SNPs_4501 0 0 1 0 1 MCM2 chr3:127340506 3'AG 127340506 Downstream 85bp
chr3 128445182 128445182 1 + G T rs112000804 128445198 + 128445178 128445218 41 CGGAGCCCCCAGCGCAGCGGCCGCGGTAAGCAGCGGGCCCA CGGATCCCCCAGCGCAGCGGCCGCGGTAAGCAGCGGGCCCA < 41bp 1 0.773356971246145 1 0.148245215415955 experiment 0.45328605750771 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAB7A ENSG00000075785 UTR5 Human protein_coding chr3:128445198 chr3:128445182 . . 0 5 hm5C_associated_SNPs_4513 2 0 1 0 1 RAB7A chr3:128445202 5'GT 128445202 Upstream 21bp
chr3 128998028 128998028 1 + C T rs563170047 128998008 + 128997988 128998028 41 CCCGAGCACCGGCCCCCGCTCCGGGGAGCAGAGTCCGGAGC CCCGAGCACCGGCCCCCGCTCCGGGGAGCAGAGTCCGGAGT < 41bp 1 0.756297897476654 1 0.907465696334839 experiment 0.487404205046691 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HMCES ENSG00000183624 UTR5 Human protein_coding chr3:128998008 chr3:128998028 . . 0 41 hm5C_associated_SNPs_4515 0 0 1 0 2 HMCES chr3:128998046 5'GT 128998046 Upstream 19bp
chr3 128998028 128998028 1 + C T rs563170047 128998008 + 128997988 128998028 41 CCCGAGCACCGGCCCCCGCTCCGGGGAGCAGAGTCCGGAGC CCCGAGCACCGGCCCCCGCTCCGGGGAGCAGAGTCCGGAGT < 41bp 1 0.756297897476654 1 0.907465696334839 experiment 0.487404205046691 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HMCES ENSG00000183624 UTR5 Human protein_coding chr3:128998008 chr3:128998028 . . 0 41 hm5C_associated_SNPs_4515 0 0 1 0 2 HMCES chr3:128998054 5'GT 128998054 Upstream 27bp
chr3 132226100 132226100 1 + A G rs79953286 132226097 + 132226077 132226117 41 AAAGGGTGATTGTGACAAAACTTATGGATCAGAATTTGTCT AAAGGGTGATTGTGACAAAACTTGTGGATCAGAATTTGTCT < 41bp 1 0.141753165572312 1 0.0961592495441437 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNAJC13 ENSG00000138246 CDS Human protein_coding chr3:132226097 chr3:132226100 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_4516 0 1 0 0 1 DNAJC13 chr3:132226197 5'GT 132226197 Upstream 98bp
chr3 136002730 136002730 1 + C T rs371155999 136002747 + 136002727 136002767 41 GGCCCATGTGCTGGTGGGGCCGTCTACTCCCCAGCCCTAAC GGCTCATGTGCTGGTGGGGCCGTCTACTCCCCAGCCCTAAC < 41bp 1 0.196602681772746 1 0.391293734312057 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCCB ENSG00000114054 CDS Human protein_coding chr3:136002747 chr3:136002730 nonsynonymous SNV 0.990 5 4 hm5C_associated_SNPs_4519 1 0 1 0 2 PCCB chr3:136002679 3'AG 136002679 Downstream 52bp
chr3 136002730 136002730 1 + C T rs371155999 136002747 + 136002727 136002767 41 GGCCCATGTGCTGGTGGGGCCGTCTACTCCCCAGCCCTAAC GGCTCATGTGCTGGTGGGGCCGTCTACTCCCCAGCCCTAAC < 41bp 1 0.196602681772746 1 0.391293734312057 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCCB ENSG00000114054 CDS Human protein_coding chr3:136002747 chr3:136002730 nonsynonymous SNV 0.990 5 4 hm5C_associated_SNPs_4519 1 0 1 0 2 PCCB chr3:136002789 5'GT 136002789 Upstream 60bp
chr3 136002738 136002738 1 + T C rs141340198 136002747 + 136002727 136002767 41 GGCCCATGTGCTGGTGGGGCCGTCTACTCCCCAGCCCTAAC GGCCCATGTGCCGGTGGGGCCGTCTACTCCCCAGCCCTAAC < 41bp 1 0.228229531979443 1 0.383101344108582 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCCB ENSG00000114054 CDS Human protein_coding chr3:136002747 chr3:136002738 synonymous SNV . 0 12 hm5C_associated_SNPs_4520 1 0 1 0 2 PCCB chr3:136002679 3'AG 136002679 Downstream 60bp
chr3 136002738 136002738 1 + T C rs141340198 136002747 + 136002727 136002767 41 GGCCCATGTGCTGGTGGGGCCGTCTACTCCCCAGCCCTAAC GGCCCATGTGCCGGTGGGGCCGTCTACTCCCCAGCCCTAAC < 41bp 1 0.228229531979443 1 0.383101344108582 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCCB ENSG00000114054 CDS Human protein_coding chr3:136002747 chr3:136002738 synonymous SNV . 0 12 hm5C_associated_SNPs_4520 1 0 1 0 2 PCCB chr3:136002789 5'GT 136002789 Upstream 52bp
chr3 138119381 138119381 1 + G A rs149904534 138119379 + 138119359 138119399 41 TGAGCTTTGCCTTCCAGATTCCGTACATAGAAACCAGTGCC TGAGCTTTGCCTTCCAGATTCCATACATAGAAACCAGTGCC < 41bp 1 0.13709188203934 1 0.166191399097443 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRAS ENSG00000158186 CDS Human protein_coding chr3:138119379 chr3:138119381 synonymous SNV . 0 23 hm5C_associated_SNPs_4522 0 0 0 0 2 MRAS chr3:138119376 3'AG 138119376 Downstream 6bp
chr3 138119381 138119381 1 + G A rs149904534 138119379 + 138119359 138119399 41 TGAGCTTTGCCTTCCAGATTCCGTACATAGAAACCAGTGCC TGAGCTTTGCCTTCCAGATTCCATACATAGAAACCAGTGCC < 41bp 1 0.13709188203934 1 0.166191399097443 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRAS ENSG00000158186 CDS Human protein_coding chr3:138119379 chr3:138119381 synonymous SNV . 0 23 hm5C_associated_SNPs_4522 0 0 0 0 2 MRAS chr3:138119455 5'GT 138119455 Upstream 75bp
chr3 138329862 138329862 1 + G A rs811322 138329875 + 138329855 138329895 41 TATCTCCGGACTCTGCCACTCTGAGGTTAGTGCCCTGCCCA TATCTCCAGACTCTGCCACTCTGAGGTTAGTGCCCTGCCCA < 41bp 1 0.7366523333193 1 0.84821605682373 experiment 0.5266953333614 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAIM ENSG00000158234 CDS Human protein_coding chr3:138329875 chr3:138329862 synonymous SNV . 0 8 hm5C_associated_SNPs_4525 0 0 1 0 1 FAIM chr3:138329879 5'GT 138329879 Upstream 18bp
chr3 140140037 140140037 1 + C T rs141120664 140140054 + 140140034 140140074 41 CTACGACTGTGGACAGAAGCCCGCTGCTCAGGACACCCTGG CTATGACTGTGGACAGAAGCCCGCTGCTCAGGACACCCTGG < 41bp 1 0.235607130994778 1 0.33832323551178 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLSTN2 ENSG00000158258 CDS Human protein_coding chr3:140140054 chr3:140140037 synonymous SNV . 0 4 hm5C_associated_SNPs_4526 0 0 0 0 2 CLSTN2 chr3:140139967 3'AG 140139967 Downstream 71bp
chr3 140140037 140140037 1 + C T rs141120664 140140054 + 140140034 140140074 41 CTACGACTGTGGACAGAAGCCCGCTGCTCAGGACACCCTGG CTATGACTGTGGACAGAAGCCCGCTGCTCAGGACACCCTGG < 41bp 1 0.235607130994778 1 0.33832323551178 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLSTN2 ENSG00000158258 CDS Human protein_coding chr3:140140054 chr3:140140037 synonymous SNV . 0 4 hm5C_associated_SNPs_4526 0 0 0 0 2 CLSTN2 chr3:140140116 5'GT 140140116 Upstream 80bp
chr3 141006162 141006162 1 + G A rs34601454 141006161 + 141006141 141006181 41 CTATCATCTCTCTAGGAAACCGTATCACCCAAAACTGGAAG CTATCATCTCTCTAGGAAACCATATCACCCAAAACTGGAAG < 41bp 1 0.0934181763099173 1 0.0621080696582794 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PXYLP1 ENSG00000155893 CDS Human protein_coding chr3:141006161 chr3:141006162 synonymous SNV . 0 22 hm5C_associated_SNPs_4527 0 0 0 0 1 PXYLP1 chr3:141006156 3'AG 141006156 Downstream 7bp
chr3 141644465 141644465 1 + A G rs147988761 141644475 + 141644455 141644495 41 AGATTGATGGATCAGCCAACCTAAAAAGTCAGGATGATCGT AGATTGATGGGTCAGCCAACCTAAAAAGTCAGGATGATCGT < 41bp 1 0.726741135994227 1 0.386220395565033 experiment 0.546517728011546 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141644475 chr3:141644465 synonymous SNV . 0 11 hm5C_associated_SNPs_4528 0 0 1 0 1 ATP1B3 chr3:141644373 3'AG 141644373 Downstream 93bp
chr3 142408606 142408606 1 + G A rs6793735 142408604 + 142408584 142408624 41 CTAATTTGTTTAACACATACCCGTGCCTGCACAAGCCGAAT CTAATTTGTTTAACACATACCCATGCCTGCACAAGCCGAAT < 41bp 1 0.0834358484418906 1 0.0639969408512115 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PLS1 ENSG00000120756 CDS Human protein_coding chr3:142408604 chr3:142408606 synonymous SNV . 0 23 hm5C_associated_SNPs_4529 0 0 0 0 1 PLS1 chr3:142408655 5'GT 142408655 Upstream 50bp
chr3 142741813 142741813 1 + C T rs190778086 142741800 + 142741780 142741820 41 TATGATGGAACATACGCTTCCCCCACCTCCATCCGGACTGC TATGATGGAACATACGCTTCCCCCACCTCCATCTGGACTGC < 41bp 1 0.565680234048424 1 0.0612162947654724 experiment 0.868639531903151 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control U2SURP ENSG00000163714 CDS Human protein_coding chr3:142741800 chr3:142741813 synonymous SNV . 0 34 hm5C_associated_SNPs_4530 0 0 1 0 1 U2SURP chr3:142741906 5'GT 142741906 Upstream 94bp
chr3 148562272 148562272 1 + G A rs145346983 148562266 + 148562246 148562286 41 CTTCATAATTCACATACAGGCTGTTCGTACCTATGGACGTG CTTCATAATTCACATACAGGCTGTTCATACCTATGGACGTG < 41bp 1 0.136173723914235 1 0.031233936548233 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562266 chr3:148562272 nonsynonymous SNV 0.859 0 27 hm5C_associated_SNPs_4531 0 0 0 0 1 CPB1 chr3:148562265 3'AG 148562265 Downstream 8bp
chr3 148562272 148562272 1 + G A rs145346983 148562271 + 148562251 148562291 41 TAATTCACATACAGGCTGTTCGTACCTATGGACGTGAGATC TAATTCACATACAGGCTGTTCATACCTATGGACGTGAGATC < 41bp 1 0.0625091836148347 1 0.0674809217453003 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562271 chr3:148562272 nonsynonymous SNV 0.859 0 22 hm5C_associated_SNPs_4532 0 0 0 0 1 CPB1 chr3:148562265 3'AG 148562265 Downstream 8bp
chr3 148562272 148562272 1 + G A rs145346983 148562275 + 148562255 148562295 41 TCACATACAGGCTGTTCGTACCTATGGACGTGAGATCCAAG TCACATACAGGCTGTTCATACCTATGGACGTGAGATCCAAG < 41bp 1 0.067199374583852 1 0.026767760515213 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562275 chr3:148562272 nonsynonymous SNV 0.859 0 18 hm5C_associated_SNPs_4533 0 0 0 0 1 CPB1 chr3:148562265 3'AG 148562265 Downstream 8bp
chr3 148562272 148562272 1 + G A rs145346983 148562276 + 148562256 148562296 41 CACATACAGGCTGTTCGTACCTATGGACGTGAGATCCAAGT CACATACAGGCTGTTCATACCTATGGACGTGAGATCCAAGT < 41bp 1 0.317406113434418 1 0.0970613658428192 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562276 chr3:148562272 nonsynonymous SNV 0.859 0 17 hm5C_associated_SNPs_4534 0 0 0 0 1 CPB1 chr3:148562265 3'AG 148562265 Downstream 8bp
chr3 148562272 148562272 1 + G A rs145346983 148562283 + 148562263 148562303 41 AGGCTGTTCGTACCTATGGACGTGAGATCCAAGTGACAGAG AGGCTGTTCATACCTATGGACGTGAGATCCAAGTGACAGAG < 41bp 1 0.647785599684325 1 0.155569076538086 experiment 0.70442880063135 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562283 chr3:148562272 nonsynonymous SNV 0.859 0 10 hm5C_associated_SNPs_4535 0 0 0 0 1 CPB1 chr3:148562265 3'AG 148562265 Downstream 8bp
chr3 148562272 148562272 1 + G A rs145346983 148562291 + 148562271 148562311 41 CGTACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTCGA CATACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTCGA < 41bp 1 0.232551419107996 1 0.423721015453339 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562291 chr3:148562272 nonsynonymous SNV 0.859 0 2 hm5C_associated_SNPs_4536 0 0 0 0 1 CPB1 chr3:148562265 3'AG 148562265 Downstream 8bp
chr3 148562272 148562272 1 + G A rs145346983 148562292 + 148562272 148562312 41 GTACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTCGAC ATACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTCGAC < 41bp 1 0.77564855100995 1 0.764796137809753 experiment 0.448702897980099 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562292 chr3:148562272 nonsynonymous SNV 0.859 0 1 hm5C_associated_SNPs_4537 0 0 0 0 1 CPB1 chr3:148562265 3'AG 148562265 Downstream 8bp
chr3 148562309 148562309 1 + C T rs147755306 148562291 + 148562271 148562311 41 CGTACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTCGA CGTACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTTGA < 41bp 1 0.231918132743792 1 0.265480667352676 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562291 chr3:148562309 synonymous SNV . 0 39 hm5C_associated_SNPs_4538 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 45bp
chr3 148562309 148562309 1 + C T rs147755306 148562291 + 148562271 148562311 41 CGTACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTCGA CGTACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTTGA < 41bp 1 0.231918132743792 1 0.265480667352676 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562291 chr3:148562309 synonymous SNV . 0 39 hm5C_associated_SNPs_4538 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 67bp
chr3 148562309 148562309 1 + C T rs147755306 148562292 + 148562272 148562312 41 GTACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTCGAC GTACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTTGAC < 41bp 1 0.760218975422186 1 0.728150010108948 experiment 0.479562049155628 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562292 chr3:148562309 synonymous SNV . 0 38 hm5C_associated_SNPs_4539 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 45bp
chr3 148562309 148562309 1 + C T rs147755306 148562292 + 148562272 148562312 41 GTACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTCGAC GTACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTTGAC < 41bp 1 0.760218975422186 1 0.728150010108948 experiment 0.479562049155628 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562292 chr3:148562309 synonymous SNV . 0 38 hm5C_associated_SNPs_4539 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 67bp
chr3 148562309 148562309 1 + C T rs147755306 148562299 + 148562279 148562319 41 TGGACGTGAGATCCAAGTGACAGAGCTTCTCGACAAGTTAG TGGACGTGAGATCCAAGTGACAGAGCTTCTTGACAAGTTAG < 41bp 1 0.459749215712845 1 0.362726747989655 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562299 chr3:148562309 synonymous SNV . 0 31 hm5C_associated_SNPs_4540 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 45bp
chr3 148562309 148562309 1 + C T rs147755306 148562299 + 148562279 148562319 41 TGGACGTGAGATCCAAGTGACAGAGCTTCTCGACAAGTTAG TGGACGTGAGATCCAAGTGACAGAGCTTCTTGACAAGTTAG < 41bp 1 0.459749215712845 1 0.362726747989655 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562299 chr3:148562309 synonymous SNV . 0 31 hm5C_associated_SNPs_4540 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 67bp
chr3 148562309 148562309 1 + C T rs147755306 148562304 + 148562284 148562324 41 GTGAGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTT GTGAGATCCAAGTGACAGAGCTTCTTGACAAGTTAGACTTT < 41bp 1 0.127766500719652 1 0.0945422649383545 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562304 chr3:148562309 synonymous SNV . 0 26 hm5C_associated_SNPs_4541 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 45bp
chr3 148562309 148562309 1 + C T rs147755306 148562304 + 148562284 148562324 41 GTGAGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTT GTGAGATCCAAGTGACAGAGCTTCTTGACAAGTTAGACTTT < 41bp 1 0.127766500719652 1 0.0945422649383545 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562304 chr3:148562309 synonymous SNV . 0 26 hm5C_associated_SNPs_4541 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 67bp
chr3 148562309 148562309 1 + C T rs147755306 148562307 + 148562287 148562327 41 AGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTAT AGATCCAAGTGACAGAGCTTCTTGACAAGTTAGACTTTTAT < 41bp 1 0.345501375606163 1 0.416341453790665 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562307 chr3:148562309 synonymous SNV . 0 23 hm5C_associated_SNPs_4542 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 45bp
chr3 148562309 148562309 1 + C T rs147755306 148562307 + 148562287 148562327 41 AGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTAT AGATCCAAGTGACAGAGCTTCTTGACAAGTTAGACTTTTAT < 41bp 1 0.345501375606163 1 0.416341453790665 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562307 chr3:148562309 synonymous SNV . 0 23 hm5C_associated_SNPs_4542 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 67bp
chr3 148562309 148562309 1 + C T rs147755306 148562312 + 148562292 148562332 41 CAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGTCCT CAAGTGACAGAGCTTCTTGACAAGTTAGACTTTTATGTCCT < 41bp 1 0.556382944056713 1 0.219128131866455 experiment 0.887234111886574 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562312 chr3:148562309 synonymous SNV . 0 18 hm5C_associated_SNPs_4543 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 45bp
chr3 148562309 148562309 1 + C T rs147755306 148562312 + 148562292 148562332 41 CAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGTCCT CAAGTGACAGAGCTTCTTGACAAGTTAGACTTTTATGTCCT < 41bp 1 0.556382944056713 1 0.219128131866455 experiment 0.887234111886574 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562312 chr3:148562309 synonymous SNV . 0 18 hm5C_associated_SNPs_4543 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 67bp
chr3 148562309 148562309 1 + C T rs147755306 148562321 + 148562301 148562341 41 GAGCTTCTCGACAAGTTAGACTTTTATGTCCTGCCTGTGCT GAGCTTCTTGACAAGTTAGACTTTTATGTCCTGCCTGTGCT < 41bp 1 0.10126691644091 1 0.0383730232715607 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562321 chr3:148562309 synonymous SNV . 0 9 hm5C_associated_SNPs_4544 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 45bp
chr3 148562309 148562309 1 + C T rs147755306 148562321 + 148562301 148562341 41 GAGCTTCTCGACAAGTTAGACTTTTATGTCCTGCCTGTGCT GAGCTTCTTGACAAGTTAGACTTTTATGTCCTGCCTGTGCT < 41bp 1 0.10126691644091 1 0.0383730232715607 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562321 chr3:148562309 synonymous SNV . 0 9 hm5C_associated_SNPs_4544 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 67bp
chr3 148562310 148562310 1 + G A rs1059502 148562291 + 148562271 148562311 41 CGTACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTCGA CGTACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTCAA < 41bp 1 0.273997272601768 1 0.327300429344177 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562291 chr3:148562310 nonsynonymous SNV 0.415 0 40 hm5C_associated_SNPs_4545 0 1 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 46bp
chr3 148562310 148562310 1 + G A rs1059502 148562291 + 148562271 148562311 41 CGTACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTCGA CGTACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTCAA < 41bp 1 0.273997272601768 1 0.327300429344177 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562291 chr3:148562310 nonsynonymous SNV 0.415 0 40 hm5C_associated_SNPs_4545 0 1 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 66bp
chr3 148562310 148562310 1 + G A rs1059502 148562292 + 148562272 148562312 41 GTACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTCGAC GTACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTCAAC < 41bp 1 0.767495166960055 1 0.737894833087921 experiment 0.465009666079891 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562292 chr3:148562310 nonsynonymous SNV 0.415 0 39 hm5C_associated_SNPs_4546 0 1 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 46bp
chr3 148562310 148562310 1 + G A rs1059502 148562292 + 148562272 148562312 41 GTACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTCGAC GTACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTCAAC < 41bp 1 0.767495166960055 1 0.737894833087921 experiment 0.465009666079891 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562292 chr3:148562310 nonsynonymous SNV 0.415 0 39 hm5C_associated_SNPs_4546 0 1 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 66bp
chr3 148562310 148562310 1 + G A rs1059502 148562299 + 148562279 148562319 41 TGGACGTGAGATCCAAGTGACAGAGCTTCTCGACAAGTTAG TGGACGTGAGATCCAAGTGACAGAGCTTCTCAACAAGTTAG < 41bp 1 0.497580205403288 1 0.264892816543579 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562299 chr3:148562310 nonsynonymous SNV 0.415 0 32 hm5C_associated_SNPs_4547 0 1 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 46bp
chr3 148562310 148562310 1 + G A rs1059502 148562299 + 148562279 148562319 41 TGGACGTGAGATCCAAGTGACAGAGCTTCTCGACAAGTTAG TGGACGTGAGATCCAAGTGACAGAGCTTCTCAACAAGTTAG < 41bp 1 0.497580205403288 1 0.264892816543579 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562299 chr3:148562310 nonsynonymous SNV 0.415 0 32 hm5C_associated_SNPs_4547 0 1 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 66bp
chr3 148562310 148562310 1 + G A rs1059502 148562304 + 148562284 148562324 41 GTGAGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTT GTGAGATCCAAGTGACAGAGCTTCTCAACAAGTTAGACTTT < 41bp 1 0.0947583240450961 1 0.11014586687088 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562304 chr3:148562310 nonsynonymous SNV 0.415 0 27 hm5C_associated_SNPs_4548 0 1 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 46bp
chr3 148562310 148562310 1 + G A rs1059502 148562304 + 148562284 148562324 41 GTGAGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTT GTGAGATCCAAGTGACAGAGCTTCTCAACAAGTTAGACTTT < 41bp 1 0.0947583240450961 1 0.11014586687088 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562304 chr3:148562310 nonsynonymous SNV 0.415 0 27 hm5C_associated_SNPs_4548 0 1 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 66bp
chr3 148562310 148562310 1 + G A rs1059502 148562307 + 148562287 148562327 41 AGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTAT AGATCCAAGTGACAGAGCTTCTCAACAAGTTAGACTTTTAT < 41bp 1 0.420682297110384 1 0.475427240133286 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562307 chr3:148562310 nonsynonymous SNV 0.415 0 24 hm5C_associated_SNPs_4549 0 1 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 46bp
chr3 148562310 148562310 1 + G A rs1059502 148562307 + 148562287 148562327 41 AGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTAT AGATCCAAGTGACAGAGCTTCTCAACAAGTTAGACTTTTAT < 41bp 1 0.420682297110384 1 0.475427240133286 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562307 chr3:148562310 nonsynonymous SNV 0.415 0 24 hm5C_associated_SNPs_4549 0 1 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 66bp
chr3 148562310 148562310 1 + G A rs1059502 148562309 + 148562289 148562329 41 ATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGT ATCCAAGTGACAGAGCTTCTCAACAAGTTAGACTTTTATGT < 41bp 1 0.716945162245212 1 0.552583634853363 experiment 0.566109675509575 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562309 chr3:148562310 nonsynonymous SNV 0.415 0 22 hm5C_associated_SNPs_4550 0 1 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 46bp
chr3 148562310 148562310 1 + G A rs1059502 148562309 + 148562289 148562329 41 ATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGT ATCCAAGTGACAGAGCTTCTCAACAAGTTAGACTTTTATGT < 41bp 1 0.716945162245212 1 0.552583634853363 experiment 0.566109675509575 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562309 chr3:148562310 nonsynonymous SNV 0.415 0 22 hm5C_associated_SNPs_4550 0 1 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 66bp
chr3 148562310 148562310 1 + G A rs1059502 148562312 + 148562292 148562332 41 CAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGTCCT CAAGTGACAGAGCTTCTCAACAAGTTAGACTTTTATGTCCT < 41bp 1 0.520966714462348 1 0.195338875055313 experiment 0.958066571075305 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562312 chr3:148562310 nonsynonymous SNV 0.415 0 19 hm5C_associated_SNPs_4551 0 1 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 46bp
chr3 148562310 148562310 1 + G A rs1059502 148562312 + 148562292 148562332 41 CAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGTCCT CAAGTGACAGAGCTTCTCAACAAGTTAGACTTTTATGTCCT < 41bp 1 0.520966714462348 1 0.195338875055313 experiment 0.958066571075305 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562312 chr3:148562310 nonsynonymous SNV 0.415 0 19 hm5C_associated_SNPs_4551 0 1 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 66bp
chr3 148562310 148562310 1 + G A rs1059502 148562321 + 148562301 148562341 41 GAGCTTCTCGACAAGTTAGACTTTTATGTCCTGCCTGTGCT GAGCTTCTCAACAAGTTAGACTTTTATGTCCTGCCTGTGCT < 41bp 1 0.0808121956611886 1 0.0274061858654022 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562321 chr3:148562310 nonsynonymous SNV 0.415 0 10 hm5C_associated_SNPs_4552 0 1 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 46bp
chr3 148562310 148562310 1 + G A rs1059502 148562321 + 148562301 148562341 41 GAGCTTCTCGACAAGTTAGACTTTTATGTCCTGCCTGTGCT GAGCTTCTCAACAAGTTAGACTTTTATGTCCTGCCTGTGCT < 41bp 1 0.0808121956611886 1 0.0274061858654022 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562321 chr3:148562310 nonsynonymous SNV 0.415 0 10 hm5C_associated_SNPs_4552 0 1 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 66bp
chr3 148562310 148562310 1 + G A rs1059502 148562330 + 148562310 148562350 41 GACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGA AACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGA < 41bp 1 0.0810844559315225 1 0.0561227202415466 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562330 chr3:148562310 nonsynonymous SNV 0.415 0 1 hm5C_associated_SNPs_4553 0 1 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 46bp
chr3 148562310 148562310 1 + G A rs1059502 148562330 + 148562310 148562350 41 GACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGA AACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGA < 41bp 1 0.0810844559315225 1 0.0561227202415466 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562330 chr3:148562310 nonsynonymous SNV 0.415 0 1 hm5C_associated_SNPs_4553 0 1 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 66bp
chr3 155628652 155628652 1 + G C rs190756684 155628644 + 155628624 155628664 41 CTTGAGTGTATTCGAGAGATCAAAGAGAGAGTAGGCACGTC CTTGAGTGTATTCGAGAGATCAAAGAGACAGTAGGCACGTC < 41bp 1 0.520858670930272 1 0.435214102268219 experiment 0.958282658139456 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GMPS ENSG00000163655 CDS Human protein_coding chr3:155628644 chr3:155628652 nonsynonymous SNV 0.986 0 29 hm5C_associated_SNPs_4565 0 0 1 0 1 GMPS chr3:155628674 5'GT 155628674 Upstream 23bp
chr3 155628662 155628662 1 + G A rs35910218 155628644 + 155628624 155628664 41 CTTGAGTGTATTCGAGAGATCAAAGAGAGAGTAGGCACGTC CTTGAGTGTATTCGAGAGATCAAAGAGAGAGTAGGCACATC < 41bp 1 0.508760838462018 1 0.347856760025024 experiment 0.982478323075965 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GMPS ENSG00000163655 CDS Human protein_coding chr3:155628644 chr3:155628662 synonymous SNV . 0 39 hm5C_associated_SNPs_4566 0 0 1 0 1 GMPS chr3:155628674 5'GT 155628674 Upstream 13bp
chr3 158383129 158383129 1 + G A rs200244667 158383132 + 158383112 158383152 41 TTCTTCTTTTAAAGAACGATCTGGAAAAATTTTCAAAAGGT TTCTTCTTTTAAAGAACAATCTGGAAAAATTTTCAAAAGGT < 41bp 1 0.720761070662381 1 0.696404576301575 experiment 0.558477858675237 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GFM1 ENSG00000168827 CDS Human protein_coding chr3:158383132 chr3:158383129 nonsynonymous SNV 0.997 2 18 hm5C_associated_SNPs_4569 0 0 0 0 1 GFM1 chr3:158383126 3'AG 158383126 Downstream 4bp
chr3 160137317 160137317 1 + A C rs61996334 160137312 + 160137292 160137332 41 AAAAAAATCTGGCAGGATTCCAGGAATATATGGAAGATTGG AAAAAAATCTGGCAGGATTCCAGGACTATATGGAAGATTGG < 41bp 1 0.771967059156332 1 0.520023882389069 experiment 0.456065881687337 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160137312 chr3:160137317 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_4573 0 0 1 0 1 SMC4 chr3:160137331 5'GT 160137331 Upstream 15bp
chr3 172098778 172098778 1 + A C rs145541551 172098759 + 172098739 172098779 41 GTGGATTTGTATTTCAGCACCTCGAGTAACACAGTTAGAAG GTGGATTTGTATTTCAGCACCTCGAGTAACACAGTTAGACG < 41bp 1 0.536605716518411 1 0.724094271659851 experiment 0.926788566963177 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172098759 chr3:172098778 nonsynonymous SNV 0.999 1 40 hm5C_associated_SNPs_4626 0 0 0 0 1 FNDC3B chr3:172098756 3'AG 172098756 Downstream 23bp
chr3 172098778 172098778 1 + A C rs145541551 172098770 + 172098750 172098790 41 TTTCAGCACCTCGAGTAACACAGTTAGAAGGAAATTCATGT TTTCAGCACCTCGAGTAACACAGTTAGACGGAAATTCATGT < 41bp 1 0.100463802647825 1 0.242064535617828 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172098770 chr3:172098778 nonsynonymous SNV 0.999 1 29 hm5C_associated_SNPs_4627 0 0 0 0 1 FNDC3B chr3:172098756 3'AG 172098756 Downstream 23bp
chr3 180666557 180666557 1 + A T rs3026195 180666572 + 180666552 180666592 41 GGAGCATGCAGAATTTTTTACCATCCAGAAACAACACAGCT GGAGCTTGCAGAATTTTTTACCATCCAGAAACAACACAGCT < 41bp 1 0.0257826522178782 1 0.162357956171036 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FXR1 ENSG00000114416 CDS Human protein_coding chr3:180666572 chr3:180666557 synonymous SNV . 0 6 hm5C_associated_SNPs_4629 0 0 0 0 2 FXR1 chr3:180666509 3'AG 180666509 Downstream 49bp
chr3 180666557 180666557 1 + A T rs3026195 180666572 + 180666552 180666592 41 GGAGCATGCAGAATTTTTTACCATCCAGAAACAACACAGCT GGAGCTTGCAGAATTTTTTACCATCCAGAAACAACACAGCT < 41bp 1 0.0257826522178782 1 0.162357956171036 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FXR1 ENSG00000114416 CDS Human protein_coding chr3:180666572 chr3:180666557 synonymous SNV . 0 6 hm5C_associated_SNPs_4629 0 0 0 0 2 FXR1 chr3:180666602 5'GT 180666602 Upstream 46bp
chr3 182586930 182586930 1 + G A rs74891936 182586934 + 182586914 182586954 41 GAGTGTAATTGTTCAGGCACCTTCAGGTAACCAATCTAAAC GAGTGTAATTGTTCAGACACCTTCAGGTAACCAATCTAAAC < 41bp 1 0.359853265522258 1 0.111676663160324 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP11B ENSG00000058063 CDS Human protein_coding chr3:182586934 chr3:182586930 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_4630 0 0 1 0 2 ATP11B chr3:182586866 3'AG 182586866 Downstream 65bp
chr3 182586930 182586930 1 + G A rs74891936 182586934 + 182586914 182586954 41 GAGTGTAATTGTTCAGGCACCTTCAGGTAACCAATCTAAAC GAGTGTAATTGTTCAGACACCTTCAGGTAACCAATCTAAAC < 41bp 1 0.359853265522258 1 0.111676663160324 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP11B ENSG00000058063 CDS Human protein_coding chr3:182586934 chr3:182586930 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_4630 0 0 1 0 2 ATP11B chr3:182586939 5'GT 182586939 Upstream 10bp
chr3 183508674 183508674 1 + C T rs577343394 183508683 + 183508663 183508703 41 AGCCAGGCCACCGTGGGAACCTGCAAGGCTGCCACCCCCAC AGCCAGGCCACTGTGGGAACCTGCAAGGCTGCCACCCCCAC < 41bp 1 0.797113957547341 1 0.669569075107574 experiment 0.405772084905317 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183508683 chr3:183508674 synonymous SNV . 0 12 hm5C_associated_SNPs_4638 0 0 1 0 2 YEATS2 chr3:183508585 3'AG 183508585 Downstream 90bp
chr3 183508674 183508674 1 + C T rs577343394 183508683 + 183508663 183508703 41 AGCCAGGCCACCGTGGGAACCTGCAAGGCTGCCACCCCCAC AGCCAGGCCACTGTGGGAACCTGCAAGGCTGCCACCCCCAC < 41bp 1 0.797113957547341 1 0.669569075107574 experiment 0.405772084905317 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183508683 chr3:183508674 synonymous SNV . 0 12 hm5C_associated_SNPs_4638 0 0 1 0 2 YEATS2 chr3:183508768 5'GT 183508768 Upstream 95bp
chr3 183508675 183508675 1 + G A rs150604664 183508683 + 183508663 183508703 41 AGCCAGGCCACCGTGGGAACCTGCAAGGCTGCCACCCCCAC AGCCAGGCCACCATGGGAACCTGCAAGGCTGCCACCCCCAC < 41bp 1 0.765852353022491 1 0.328295737504959 experiment 0.468295293955018 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183508683 chr3:183508675 nonsynonymous SNV 0.990 0 13 hm5C_associated_SNPs_4639 0 0 1 0 2 YEATS2 chr3:183508585 3'AG 183508585 Downstream 91bp
chr3 183508675 183508675 1 + G A rs150604664 183508683 + 183508663 183508703 41 AGCCAGGCCACCGTGGGAACCTGCAAGGCTGCCACCCCCAC AGCCAGGCCACCATGGGAACCTGCAAGGCTGCCACCCCCAC < 41bp 1 0.765852353022491 1 0.328295737504959 experiment 0.468295293955018 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183508683 chr3:183508675 nonsynonymous SNV 0.990 0 13 hm5C_associated_SNPs_4639 0 0 1 0 2 YEATS2 chr3:183508768 5'GT 183508768 Upstream 94bp
chr3 183860633 183860633 1 + C T rs148734067 183860652 + 183860632 183860672 41 CCGGACAGCCGGGGAGGCTCCCCTCAGATGGATGACATCAA CTGGACAGCCGGGGAGGCTCCCCTCAGATGGATGACATCAA < 41bp 1 0.118405818070432 1 0.0812154114246368 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183860652 chr3:183860633 nonsynonymous SNV 0.996 1 2 hm5C_associated_SNPs_4640 0 0 1 0 2 EIF2B5 chr3:183860567 3'AG 183860567 Downstream 67bp
chr3 183860633 183860633 1 + C T rs148734067 183860652 + 183860632 183860672 41 CCGGACAGCCGGGGAGGCTCCCCTCAGATGGATGACATCAA CTGGACAGCCGGGGAGGCTCCCCTCAGATGGATGACATCAA < 41bp 1 0.118405818070432 1 0.0812154114246368 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183860652 chr3:183860633 nonsynonymous SNV 0.996 1 2 hm5C_associated_SNPs_4640 0 0 1 0 2 EIF2B5 chr3:183860674 5'GT 183860674 Upstream 42bp
chr3 183860634 183860634 1 + G A rs142361539 183860652 + 183860632 183860672 41 CCGGACAGCCGGGGAGGCTCCCCTCAGATGGATGACATCAA CCAGACAGCCGGGGAGGCTCCCCTCAGATGGATGACATCAA < 41bp 1 0.120570691136638 1 0.104456424713135 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183860652 chr3:183860634 synonymous SNV . 0 3 hm5C_associated_SNPs_4641 1 0 1 0 2 EIF2B5 chr3:183860567 3'AG 183860567 Downstream 68bp
chr3 183860634 183860634 1 + G A rs142361539 183860652 + 183860632 183860672 41 CCGGACAGCCGGGGAGGCTCCCCTCAGATGGATGACATCAA CCAGACAGCCGGGGAGGCTCCCCTCAGATGGATGACATCAA < 41bp 1 0.120570691136638 1 0.104456424713135 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183860652 chr3:183860634 synonymous SNV . 0 3 hm5C_associated_SNPs_4641 1 0 1 0 2 EIF2B5 chr3:183860674 5'GT 183860674 Upstream 41bp
chr3 184021193 184021193 1 + T C rs146339706 184021213 + 184021193 184021233 41 TGGCCAAGACAAGCTGCTAACAGATGATGGCAACAAATGGC CGGCCAAGACAAGCTGCTAACAGATGATGGCAACAAATGGC < 41bp 1 0.446646244998647 1 0.692312598228455 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184021213 chr3:184021193 synonymous SNV . 0 1 hm5C_associated_SNPs_4646 0 0 1 0 1 PSMD2 chr3:184021254 5'GT 184021254 Upstream 62bp
chr3 184037533 184037533 1 + A G rs13319149 184037529 + 184037509 184037549 41 CAGTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAA CAGTTTCCCACTGGCGTGGCCCCCGCCCCAGTTTTGATGAA < 41bp 1 0.263059123502588 1 0.158344894647598 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037529 chr3:184037533 nonsynonymous SNV 0.953 0 25 hm5C_associated_SNPs_4654 0 0 1 0 2 EIF4G1 chr3:184037477 3'AG 184037477 Downstream 57bp
chr3 184037533 184037533 1 + A G rs13319149 184037529 + 184037509 184037549 41 CAGTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAA CAGTTTCCCACTGGCGTGGCCCCCGCCCCAGTTTTGATGAA < 41bp 1 0.263059123502588 1 0.158344894647598 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037529 chr3:184037533 nonsynonymous SNV 0.953 0 25 hm5C_associated_SNPs_4654 0 0 1 0 2 EIF4G1 chr3:184037589 5'GT 184037589 Upstream 57bp
chr3 184037533 184037533 1 + A G rs13319149 184037530 + 184037510 184037550 41 AGTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAAC AGTTTCCCACTGGCGTGGCCCCCGCCCCAGTTTTGATGAAC < 41bp 1 0.203081807191821 1 0.0953438282012939 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037530 chr3:184037533 nonsynonymous SNV 0.953 0 24 hm5C_associated_SNPs_4655 0 0 1 0 2 EIF4G1 chr3:184037477 3'AG 184037477 Downstream 57bp
chr3 184037533 184037533 1 + A G rs13319149 184037530 + 184037510 184037550 41 AGTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAAC AGTTTCCCACTGGCGTGGCCCCCGCCCCAGTTTTGATGAAC < 41bp 1 0.203081807191821 1 0.0953438282012939 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037530 chr3:184037533 nonsynonymous SNV 0.953 0 24 hm5C_associated_SNPs_4655 0 0 1 0 2 EIF4G1 chr3:184037589 5'GT 184037589 Upstream 57bp
chr3 184037533 184037533 1 + A G rs13319149 184037531 + 184037511 184037551 41 GTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAACC GTTTCCCACTGGCGTGGCCCCCGCCCCAGTTTTGATGAACC < 41bp 1 0.148895017017421 1 0.204185217618942 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037531 chr3:184037533 nonsynonymous SNV 0.953 0 23 hm5C_associated_SNPs_4656 0 0 1 0 2 EIF4G1 chr3:184037477 3'AG 184037477 Downstream 57bp
chr3 184037533 184037533 1 + A G rs13319149 184037531 + 184037511 184037551 41 GTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAACC GTTTCCCACTGGCGTGGCCCCCGCCCCAGTTTTGATGAACC < 41bp 1 0.148895017017421 1 0.204185217618942 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037531 chr3:184037533 nonsynonymous SNV 0.953 0 23 hm5C_associated_SNPs_4656 0 0 1 0 2 EIF4G1 chr3:184037589 5'GT 184037589 Upstream 57bp
chr3 184037533 184037533 1 + A G rs13319149 184037534 + 184037514 184037554 41 TCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAACCAGC TCCCACTGGCGTGGCCCCCGCCCCAGTTTTGATGAACCAGC < 41bp 1 0.587679684346808 1 0.319576680660248 experiment 0.824640631306385 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037534 chr3:184037533 nonsynonymous SNV 0.953 0 20 hm5C_associated_SNPs_4657 0 0 1 0 2 EIF4G1 chr3:184037477 3'AG 184037477 Downstream 57bp
chr3 184037533 184037533 1 + A G rs13319149 184037534 + 184037514 184037554 41 TCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAACCAGC TCCCACTGGCGTGGCCCCCGCCCCAGTTTTGATGAACCAGC < 41bp 1 0.587679684346808 1 0.319576680660248 experiment 0.824640631306385 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037534 chr3:184037533 nonsynonymous SNV 0.953 0 20 hm5C_associated_SNPs_4657 0 0 1 0 2 EIF4G1 chr3:184037589 5'GT 184037589 Upstream 57bp
chr3 184648315 184648315 1 + G A rs74927619 184648321 + 184648301 184648341 41 GACACAGTGCAGAGGAGAAGCAGTCTGTATGGCAGAAAGCA GACACAGTGCAGAGAAGAAGCAGTCTGTATGGCAGAAAGCA < 41bp 1 0.110878098228124 1 0.169488281011581 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS8 ENSG00000156931 CDS Human protein_coding chr3:184648321 chr3:184648315 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_4658 0 0 1 0 2 VPS8 chr3:184648258 3'AG 184648258 Downstream 58bp
chr3 184648315 184648315 1 + G A rs74927619 184648321 + 184648301 184648341 41 GACACAGTGCAGAGGAGAAGCAGTCTGTATGGCAGAAAGCA GACACAGTGCAGAGAAGAAGCAGTCTGTATGGCAGAAAGCA < 41bp 1 0.110878098228124 1 0.169488281011581 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS8 ENSG00000156931 CDS Human protein_coding chr3:184648321 chr3:184648315 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_4658 0 0 1 0 2 VPS8 chr3:184648356 5'GT 184648356 Upstream 42bp
chr3 193336666 193336666 1 + G A rs569675223 193336676 + 193336656 193336696 41 AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATCGTG AGGTTCTCCGAAAGAAACGGCGTTTAGAGCAACAGATCGTG < 41bp 1 0.0445000557694014 1 0.0466357469558716 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336676 chr3:193336666 nonsynonymous SNV 0.948 0 11 hm5C_associated_SNPs_4726 1 0 1 0 2 OPA1 chr3:193336658 3'AG 193336658 Downstream 9bp
chr3 193336666 193336666 1 + G A rs569675223 193336676 + 193336656 193336696 41 AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATCGTG AGGTTCTCCGAAAGAAACGGCGTTTAGAGCAACAGATCGTG < 41bp 1 0.0445000557694014 1 0.0466357469558716 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336676 chr3:193336666 nonsynonymous SNV 0.948 0 11 hm5C_associated_SNPs_4726 1 0 1 0 2 OPA1 chr3:193336725 5'GT 193336725 Upstream 60bp
chr3 195389591 195389591 1 + C A rs568347520 195389602 + 195389582 195389622 41 GGTCACACACTGTTGCAGCGCAGGTAAGAGAAAGGTGCCCC GGTCACACAATGTTGCAGCGCAGGTAAGAGAAAGGTGCCCC < 41bp 1 0.546257035371832 1 0.260939121246338 experiment 0.907485929256335 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195389602 chr3:195389591 . . 0 10 hm5C_associated_SNPs_4733 0 0 0 0 1 SDHAP2 chr3:195389604 5'GT 195389604 Upstream 14bp
chr3 195398079 195398079 1 + A T rs545546213 195398099 + 195398079 195398119 41 AAGGTTTATGGAGCGATACGCCCCCATCGCGAAGGACCTGG TAGGTTTATGGAGCGATACGCCCCCATCGCGAAGGACCTGG < 41bp 1 0.15117604352358 1 0.0292039811611176 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195398099 chr3:195398079 . . 0 1 hm5C_associated_SNPs_4734 0 0 0 0 2 SDHAP2 chr3:195398003 3'AG 195398003 Downstream 77bp
chr3 195398079 195398079 1 + A T rs545546213 195398099 + 195398079 195398119 41 AAGGTTTATGGAGCGATACGCCCCCATCGCGAAGGACCTGG TAGGTTTATGGAGCGATACGCCCCCATCGCGAAGGACCTGG < 41bp 1 0.15117604352358 1 0.0292039811611176 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195398099 chr3:195398079 . . 0 1 hm5C_associated_SNPs_4734 0 0 0 0 2 SDHAP2 chr3:195398171 5'GT 195398171 Upstream 93bp
chr3 195398106 195398106 1 + C T rs564303698 195398099 + 195398079 195398119 41 AAGGTTTATGGAGCGATACGCCCCCATCGCGAAGGACCTGG AAGGTTTATGGAGCGATACGCCCCCATTGCGAAGGACCTGG < 41bp 1 0.144955537545939 1 0.0399689674377441 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195398099 chr3:195398106 . . 0 28 hm5C_associated_SNPs_4735 0 0 0 0 1 SDHAP2 chr3:195398171 5'GT 195398171 Upstream 66bp
chr3 196533524 196533524 1 + C G rs73891516 196533533 + 196533513 196533553 41 ACTGCTCCTCCCGTTATTGCCCCGCGACCGGATCATACGAA ACTGCTCCTCCGGTTATTGCCCCGCGACCGGATCATACGAA < 41bp 1 0.512014749522462 1 0.685320615768433 experiment 0.975970500955077 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAK2 ENSG00000180370 CDS Human protein_coding chr3:196533533 chr3:196533524 synonymous SNV . 0 12 hm5C_associated_SNPs_4736 0 0 1 0 2 PAK2 chr3:196533450 3'AG 196533450 Downstream 75bp
chr3 196533524 196533524 1 + C G rs73891516 196533533 + 196533513 196533553 41 ACTGCTCCTCCCGTTATTGCCCCGCGACCGGATCATACGAA ACTGCTCCTCCGGTTATTGCCCCGCGACCGGATCATACGAA < 41bp 1 0.512014749522462 1 0.685320615768433 experiment 0.975970500955077 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAK2 ENSG00000180370 CDS Human protein_coding chr3:196533533 chr3:196533524 synonymous SNV . 0 12 hm5C_associated_SNPs_4736 0 0 1 0 2 PAK2 chr3:196533557 5'GT 196533557 Upstream 34bp
chr4 502741 502741 1 + G T rs201853289 502758 + 502738 502778 41 TCTGCGTTTGAAAGGAAACCCGGTGAGAATTTAGGAATGTT TCTTCGTTTGAAAGGAAACCCGGTGAGAATTTAGGAATGTT < 41bp 1 0.208129564768793 1 0.322696179151535 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIGG ENSG00000174227 CDS Human protein_coding chr4:502758 chr4:502741 nonsynonymous SNV 0.970 0 4 hm5C_associated_SNPs_4746 0 0 1 0 1 PIGG chr4:502759 5'GT 502759 Upstream 19bp
chr4 760480 760480 1 + G A rs116108910 760465 + 760445 760485 41 CTTATGAAACACAACAGCAGCTCCCTGACTGGTTCGCCTTT CTTATGAAACACAACAGCAGCTCCCTGACTGGTTCACCTTT < 41bp 1 0.227666517773723 1 0.135688364505768 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCGF3 ENSG00000249592 ncRNA_intronic Human antisense chr4:760465 chr4:760480 . . 0 36 hm5C_associated_SNPs_4749 0 0 1 0 1 PCGF3 chr4:760462 3'AG 760462 Downstream 19bp
chr4 980932 980932 1 + G A rs10902762 980936 + 980916 980956 41 CCTCGCTCCTGGCCGCGCCCCCGGTGGCCCCGGCCGAGGCC CCTCGCTCCTGGCCGCACCCCCGGTGGCCCCGGCCGAGGCC < 41bp 1 0.707060891197044 1 0.824835598468781 experiment 0.585878217605912 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IDUA ENSG00000127415 CDS Human protein_coding chr4:980936 chr4:980932 synonymous SNV . 0 17 hm5C_associated_SNPs_4754 2 0 0 0 1 IDUA chr4:981030 5'GT 981030 Upstream 99bp
chr4 1018705 1018705 1 + C A rs4647930 1018696 + 1018676 1018716 41 TCCTCTCGCTCTTGCAGACCCAAAACCGCCAGGGCCACCTG TCCTCTCGCTCTTGCAGACCCAAAACCGCAAGGGCCACCTG < 41bp 1 0.652625270456188 1 0.298353612422943 experiment 0.694749459087623 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FGFRL1 ENSG00000127418 CDS Human protein_coding chr4:1018696 chr4:1018705 nonsynonymous SNV 0.139 2 30 hm5C_associated_SNPs_4755 0 0 1 0 1 FGFRL1 chr4:1018693 3'AG 1018693 Downstream 13bp
chr4 1723279 1723279 1 + T C rs3134865 1723295 + 1723275 1723315 41 CAGCTAGGCTTGGCCCCCGGCGTGGAGCAGACGCGGACCCC CAGCCAGGCTTGGCCCCCGGCGTGGAGCAGACGCGGACCCC < 41bp 1 0.592127170555083 1 0.806971907615662 experiment 0.815745658889834 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TACC3 ENSG00000013810 UTR5 Human protein_coding chr4:1723295 chr4:1723279 . . 0 5 hm5C_associated_SNPs_4762 0 0 1 0 1 TACC3 chr4:1723370 5'GT 1723370 Upstream 92bp
chr4 1723292 1723292 1 + C T rs115455600 1723295 + 1723275 1723315 41 CAGCTAGGCTTGGCCCCCGGCGTGGAGCAGACGCGGACCCC CAGCTAGGCTTGGCCCCTGGCGTGGAGCAGACGCGGACCCC < 41bp 1 0.636507250509817 1 0.880255877971649 experiment 0.726985498980367 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TACC3 ENSG00000013810 UTR5 Human protein_coding chr4:1723295 chr4:1723292 . . 0 18 hm5C_associated_SNPs_4763 0 0 1 0 1 TACC3 chr4:1723370 5'GT 1723370 Upstream 79bp
chr4 2943361 2943361 1 - T C rs1054090 2943341 - 2943321 2943361 41 AAGCCCTCCTCACGGATCACCTGGCGGACTGCAGCCACCCG GAGCCCTCCTCACGGATCACCTGGCGGACTGCAGCCACCCG < 41bp 1 0.587904340182473 1 0.642295062541962 experiment 0.824191319635053 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOP14 ENSG00000087269 CDS Human protein_coding chr4:2943341 chr4:2943361 nonsynonymous SNV 0.000 0 1 hm5C_associated_SNPs_4796 0 0 1 0 2 NOP14 chr4:2943309 5'GT 2943309 Upstream 53bp
chr4 2943361 2943361 1 - T C rs1054090 2943341 - 2943321 2943361 41 AAGCCCTCCTCACGGATCACCTGGCGGACTGCAGCCACCCG GAGCCCTCCTCACGGATCACCTGGCGGACTGCAGCCACCCG < 41bp 1 0.587904340182473 1 0.642295062541962 experiment 0.824191319635053 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOP14 ENSG00000087269 CDS Human protein_coding chr4:2943341 chr4:2943361 nonsynonymous SNV 0.000 0 1 hm5C_associated_SNPs_4796 0 0 1 0 2 NOP14 chr4:2943456 3'AG 2943456 Downstream 96bp
chr4 3107143 3107143 1 + G C rs368339242 3107132 + 3107112 3107152 41 CCCTGTGGAGGTTTGCTGAGCTGGCTCACCTGGTTCGGCCT CCCTGTGGAGGTTTGCTGAGCTGGCTCACCTCGTTCGGCCT < 41bp 1 0.313303266869334 1 0.379713177680969 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3107132 chr4:3107143 synonymous SNV . 0 32 hm5C_associated_SNPs_4800 0 0 1 0 2 HTT chr4:3107084 3'AG 3107084 Downstream 60bp
chr4 3107143 3107143 1 + G C rs368339242 3107132 + 3107112 3107152 41 CCCTGTGGAGGTTTGCTGAGCTGGCTCACCTGGTTCGGCCT CCCTGTGGAGGTTTGCTGAGCTGGCTCACCTCGTTCGGCCT < 41bp 1 0.313303266869334 1 0.379713177680969 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3107132 chr4:3107143 synonymous SNV . 0 32 hm5C_associated_SNPs_4800 0 0 1 0 2 HTT chr4:3107163 5'GT 3107163 Upstream 21bp
chr4 3148653 3148653 1 + T G rs1143646 3148659 + 3148639 3148679 41 CAAGATGCTTTGATTTTGGCCGGAAACTTGCTTGCAGGTAC CAAGATGCTTTGATGTTGGCCGGAAACTTGCTTGCAGGTAC < 41bp 1 0.332918863776149 1 0.527097404003143 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3148659 chr4:3148653 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_4801 0 0 1 0 1 HTT chr4:3148675 5'GT 3148675 Upstream 23bp
chr4 3495182 3495182 1 + C A rs77513082 3495163 + 3495143 3495183 41 CAGGCGGCCCCCACGCGGGGCCACCCCCGGCTTTCTTTTCG CAGGCGGCCCCCACGCGGGGCCACCCCCGGCTTTCTTTTAG < 41bp 1 0.0274156186321667 1 0.0505809485912323 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOK7 ENSG00000175920 CDS Human protein_coding chr4:3495163 chr4:3495182 stopgain 0.351 0 40 hm5C_associated_SNPs_4804 0 0 1 0 1 DOK7 chr4:3495210 5'GT 3495210 Upstream 29bp
chr4 3495182 3495182 1 + C A rs77513082 3495164 + 3495144 3495184 41 AGGCGGCCCCCACGCGGGGCCACCCCCGGCTTTCTTTTCGG AGGCGGCCCCCACGCGGGGCCACCCCCGGCTTTCTTTTAGG < 41bp 1 0.124308604708499 1 0.137749522924423 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOK7 ENSG00000175920 CDS Human protein_coding chr4:3495164 chr4:3495182 stopgain 0.351 0 39 hm5C_associated_SNPs_4805 0 0 1 0 1 DOK7 chr4:3495210 5'GT 3495210 Upstream 29bp
chr4 5733336 5733336 1 + G A rs113002470 5733343 + 5733323 5733363 41 AGGTTTCTCAGCCGCACCTTCCTCCGGGTGAACGCCTTCCC AGGTTTCTCAGCCACACCTTCCTCCGGGTGAACGCCTTCCC < 41bp 1 0.0347246375251189 1 0.0503665506839752 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EVC ENSG00000072840 CDS Human protein_coding chr4:5733343 chr4:5733336 nonsynonymous SNV 0.036 3 14 hm5C_associated_SNPs_4819 0 0 1 0 1 EVC chr4:5733384 5'GT 5733384 Upstream 49bp
chr4 6279191 6279191 1 + C G rs71524363 6279179 + 6279159 6279199 41 ACCTTGACTTTTCTTCCAGGCAGGATGGACTCCAACACTGC ACCTTGACTTTTCTTCCAGGCAGGATGGACTCGAACACTGC < 41bp 1 0.686527627782378 1 0.771250605583191 experiment 0.626944744435244 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WFS1 ENSG00000109501 CDS Human protein_coding chr4:6279179 chr4:6279191 synonymous SNV . 0 33 hm5C_associated_SNPs_4820 0 0 1 0 2 WFS1 chr4:6279178 3'AG 6279178 Downstream 14bp
chr4 6279191 6279191 1 + C G rs71524363 6279179 + 6279159 6279199 41 ACCTTGACTTTTCTTCCAGGCAGGATGGACTCCAACACTGC ACCTTGACTTTTCTTCCAGGCAGGATGGACTCGAACACTGC < 41bp 1 0.686527627782378 1 0.771250605583191 experiment 0.626944744435244 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WFS1 ENSG00000109501 CDS Human protein_coding chr4:6279179 chr4:6279191 synonymous SNV . 0 33 hm5C_associated_SNPs_4820 0 0 1 0 2 WFS1 chr4:6279182 3'AG 6279182 Downstream 10bp
chr4 6596385 6596385 1 + A G rs150681679 6596403 + 6596383 6596423 41 CTACTTCCGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG CTGCTTCCGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG < 41bp 1 0.169688828118512 1 0.0338751971721649 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6596403 chr4:6596385 nonsynonymous SNV 0.876 5 3 hm5C_associated_SNPs_4821 0 0 0 0 2 MAN2B2 chr4:6596348 3'AG 6596348 Downstream 38bp
chr4 6596385 6596385 1 + A G rs150681679 6596403 + 6596383 6596423 41 CTACTTCCGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG CTGCTTCCGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG < 41bp 1 0.169688828118512 1 0.0338751971721649 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6596403 chr4:6596385 nonsynonymous SNV 0.876 5 3 hm5C_associated_SNPs_4821 0 0 0 0 2 MAN2B2 chr4:6596459 5'GT 6596459 Upstream 75bp
chr4 6598976 6598976 1 + G A rs6857025 6598971 + 6598951 6598991 41 TGTGGCCGGCCCCCCGTGGGCATCTGGACCCCACCTGGGCC TGTGGCCGGCCCCCCGTGGGCATCTAGACCCCACCTGGGCC < 41bp 1 0.248786549463619 1 0.136831223964691 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6598971 chr4:6598976 synonymous SNV . 0 26 hm5C_associated_SNPs_4822 0 0 0 0 1 MAN2B2 chr4:6599030 5'GT 6599030 Upstream 55bp
chr4 6623011 6623011 1 + G A rs140158985 6623015 + 6622995 6623035 41 CACTTTCAACAGCAGTGAGCCCTGGGCAGATGCCCCGGCCC CACTTTCAACAGCAGTAAGCCCTGGGCAGATGCCCCGGCCC < 41bp 1 0.368805863280923 1 0.744836330413818 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6623015 chr4:6623011 synonymous SNV . 0 17 hm5C_associated_SNPs_4824 0 0 1 0 1 MAN2B2 chr4:6622915 3'AG 6622915 Downstream 97bp
chr4 6642403 6642403 1 + C T rs10023643 6642422 + 6642402 6642442 41 CCGGGACTCCATTTTGTTCGCCGTTACTCTGCGCGTAAGTC CTGGGACTCCATTTTGTTCGCCGTTACTCTGCGCGTAAGTC < 41bp 1 0.217006998880907 1 0.0885703563690186 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRFAP1 ENSG00000179010 UTR5 Human protein_coding chr4:6642422 chr4:6642403 . . 0 2 hm5C_associated_SNPs_4826 0 0 1 0 1 MRFAP1 chr4:6642435 5'GT 6642435 Upstream 33bp
chr4 6695699 6695699 1 + G A rs187031070 6695701 + 6695681 6695721 41 ATGGGCATGATCATAGACGTCTTTTCCCGATATTCGGGCAG ATGGGCATGATCATAGACATCTTTTCCCGATATTCGGGCAG < 41bp 1 0.162907873861205 1 0.0311714708805084 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74773;RNA-BisSeq;Huh7;Control S100P ENSG00000163993 CDS Human protein_coding chr4:6695701 chr4:6695699 nonsynonymous SNV 0.011 1 19 hm5C_associated_SNPs_4828 0 0 1 0 1 S100P chr4:6695797 5'GT 6695797 Upstream 99bp
chr4 6695708 6695708 1 + C T rs543945473 6695701 + 6695681 6695721 41 ATGGGCATGATCATAGACGTCTTTTCCCGATATTCGGGCAG ATGGGCATGATCATAGACGTCTTTTCCTGATATTCGGGCAG < 41bp 1 0.116052979883941 1 0.0473883450031281 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74773;RNA-BisSeq;Huh7;Control S100P ENSG00000163993 CDS Human protein_coding chr4:6695701 chr4:6695708 stopgain 0.002 0 28 hm5C_associated_SNPs_4829 0 0 1 0 1 S100P chr4:6695797 5'GT 6695797 Upstream 90bp
chr4 7026923 7026923 1 + C T rs200547397 7026933 + 7026913 7026953 41 AGGACCTGCCCGCCGAGGAGCTGTTTGCCTCCATCGCCACG AGGACCTGCCTGCCGAGGAGCTGTTTGCCTCCATCGCCACG < 41bp 1 0.223250279186232 1 0.0250622034072876 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBC1D14 ENSG00000132405 CDS Human protein_coding chr4:7026933 chr4:7026923 synonymous SNV . 0 11 hm5C_associated_SNPs_4832 0 0 1 0 1 TBC1D14 chr4:7026989 5'GT 7026989 Upstream 67bp
chr4 7533308 7533308 1 + C G rs150440148 7533294 + 7533274 7533314 41 CGTCCTACACCAAGCTCACCCTCCAGCCTGGTGTCACCACC CGTCCTACACCAAGCTCACCCTCCAGCCTGGTGTGACCACC < 41bp 1 0.578144165455197 1 0.97165048122406 experiment 0.843711669089606 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SORCS2 ENSG00000184985 CDS Human protein_coding chr4:7533294 chr4:7533308 synonymous SNV . 0 35 hm5C_associated_SNPs_4834 0 0 0 0 2 SORCS2 chr4:7533257 3'AG 7533257 Downstream 52bp
chr4 7533308 7533308 1 + C G rs150440148 7533294 + 7533274 7533314 41 CGTCCTACACCAAGCTCACCCTCCAGCCTGGTGTCACCACC CGTCCTACACCAAGCTCACCCTCCAGCCTGGTGTGACCACC < 41bp 1 0.578144165455197 1 0.97165048122406 experiment 0.843711669089606 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SORCS2 ENSG00000184985 CDS Human protein_coding chr4:7533294 chr4:7533308 synonymous SNV . 0 35 hm5C_associated_SNPs_4834 0 0 0 0 2 SORCS2 chr4:7533356 5'GT 7533356 Upstream 49bp
chr4 8238041 8238041 1 + C T rs144056490 8238056 + 8238036 8238076 41 GCAACCGCAAGGCGGAGCTGCGGCTGTGCAACAAGCTGGTG GCAACTGCAAGGCGGAGCTGCGGCTGTGCAACAAGCTGGTG < 41bp 1 0.382037596667522 1 0.136302500963211 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8238056 chr4:8238041 nonsynonymous SNV 0.016 1 6 hm5C_associated_SNPs_4836 0 0 1 0 1 SH3TC1 chr4:8238005 3'AG 8238005 Downstream 37bp
chr4 8238048 8238048 1 + C A rs112207455 8238056 + 8238036 8238076 41 GCAACCGCAAGGCGGAGCTGCGGCTGTGCAACAAGCTGGTG GCAACCGCAAGGAGGAGCTGCGGCTGTGCAACAAGCTGGTG < 41bp 1 0.325029955506117 1 0.127215057611465 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8238056 chr4:8238048 nonsynonymous SNV 0.003 1 13 hm5C_associated_SNPs_4837 0 0 1 0 1 SH3TC1 chr4:8238005 3'AG 8238005 Downstream 44bp
chr4 8238057 8238057 1 + G A rs143995291 8238056 + 8238036 8238076 41 GCAACCGCAAGGCGGAGCTGCGGCTGTGCAACAAGCTGGTG GCAACCGCAAGGCGGAGCTGCAGCTGTGCAACAAGCTGGTG < 41bp 1 0.313265514785709 1 0.102235347032547 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8238056 chr4:8238057 nonsynonymous SNV 0.763 4 22 hm5C_associated_SNPs_4838 0 0 1 0 2 SH3TC1 chr4:8238005 3'AG 8238005 Downstream 53bp
chr4 8238057 8238057 1 + G A rs143995291 8238056 + 8238036 8238076 41 GCAACCGCAAGGCGGAGCTGCGGCTGTGCAACAAGCTGGTG GCAACCGCAAGGCGGAGCTGCAGCTGTGCAACAAGCTGGTG < 41bp 1 0.313265514785709 1 0.102235347032547 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8238056 chr4:8238057 nonsynonymous SNV 0.763 4 22 hm5C_associated_SNPs_4838 0 0 1 0 2 SH3TC1 chr4:8238155 5'GT 8238155 Upstream 99bp
chr4 20702139 20702139 1 + C A rs533537868 20702150 + 20702130 20702170 41 ACCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCT ACCGAGTGCAGGTCATAAGCCCCCCCCGGTGGGGGGCAGCT < 41bp 1 0.175383928481845 1 0.0657207071781158 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702150 chr4:20702139 . . 0 10 hm5C_associated_SNPs_4863 0 0 1 0 2 PACRGL chr4:20702201 5'GT 20702201 Upstream 63bp
chr4 20702139 20702139 1 + C A rs533537868 20702150 + 20702130 20702170 41 ACCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCT ACCGAGTGCAGGTCATAAGCCCCCCCCGGTGGGGGGCAGCT < 41bp 1 0.175383928481845 1 0.0657207071781158 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702150 chr4:20702139 . . 0 10 hm5C_associated_SNPs_4863 0 0 1 0 2 PACRGL chr4:20702234 5'GT 20702234 Upstream 96bp
chr4 20702139 20702139 1 + C A rs533537868 20702151 + 20702131 20702171 41 CCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTG CCGAGTGCAGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTG < 41bp 1 0.163519613896218 1 0.0559248030185699 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702151 chr4:20702139 . . 0 9 hm5C_associated_SNPs_4864 0 0 1 0 2 PACRGL chr4:20702201 5'GT 20702201 Upstream 63bp
chr4 20702139 20702139 1 + C A rs533537868 20702151 + 20702131 20702171 41 CCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTG CCGAGTGCAGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTG < 41bp 1 0.163519613896218 1 0.0559248030185699 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702151 chr4:20702139 . . 0 9 hm5C_associated_SNPs_4864 0 0 1 0 2 PACRGL chr4:20702234 5'GT 20702234 Upstream 96bp
chr4 20702139 20702139 1 + C A rs533537868 20702152 + 20702132 20702172 41 CGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGG CGAGTGCAGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGG < 41bp 1 0.19890841681741 1 0.201973021030426 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702152 chr4:20702139 . . 0 8 hm5C_associated_SNPs_4865 0 0 1 0 2 PACRGL chr4:20702201 5'GT 20702201 Upstream 63bp
chr4 20702139 20702139 1 + C A rs533537868 20702152 + 20702132 20702172 41 CGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGG CGAGTGCAGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGG < 41bp 1 0.19890841681741 1 0.201973021030426 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702152 chr4:20702139 . . 0 8 hm5C_associated_SNPs_4865 0 0 1 0 2 PACRGL chr4:20702234 5'GT 20702234 Upstream 96bp
chr4 20702139 20702139 1 + C A rs533537868 20702153 + 20702133 20702173 41 GAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGGT GAGTGCAGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGGT < 41bp 1 0.521346255491339 1 0.3326455950737 experiment 0.957307489017323 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702153 chr4:20702139 . . 0 7 hm5C_associated_SNPs_4866 0 0 1 0 2 PACRGL chr4:20702201 5'GT 20702201 Upstream 63bp
chr4 20702139 20702139 1 + C A rs533537868 20702153 + 20702133 20702173 41 GAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGGT GAGTGCAGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGGT < 41bp 1 0.521346255491339 1 0.3326455950737 experiment 0.957307489017323 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702153 chr4:20702139 . . 0 7 hm5C_associated_SNPs_4866 0 0 1 0 2 PACRGL chr4:20702234 5'GT 20702234 Upstream 96bp
chr4 20702139 20702139 1 + C A rs533537868 20702154 + 20702134 20702174 41 AGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGGTG AGTGCAGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGGTG < 41bp 1 0.564333203168466 1 0.37446391582489 experiment 0.871333593663068 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702154 chr4:20702139 . . 0 6 hm5C_associated_SNPs_4867 0 0 1 0 2 PACRGL chr4:20702201 5'GT 20702201 Upstream 63bp
chr4 20702139 20702139 1 + C A rs533537868 20702154 + 20702134 20702174 41 AGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGGTG AGTGCAGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGGTG < 41bp 1 0.564333203168466 1 0.37446391582489 experiment 0.871333593663068 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702154 chr4:20702139 . . 0 6 hm5C_associated_SNPs_4867 0 0 1 0 2 PACRGL chr4:20702234 5'GT 20702234 Upstream 96bp
chr4 20702148 20702148 1 + G A rs558872339 20702150 + 20702130 20702170 41 ACCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCT ACCGAGTGCCGGTCATAAACCCCCCCCGGTGGGGGGCAGCT < 41bp 1 0.223595349833778 1 0.0551818013191223 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702150 chr4:20702148 . . 0 19 hm5C_associated_SNPs_4868 0 0 1 0 2 PACRGL chr4:20702201 5'GT 20702201 Upstream 54bp
chr4 20702148 20702148 1 + G A rs558872339 20702150 + 20702130 20702170 41 ACCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCT ACCGAGTGCCGGTCATAAACCCCCCCCGGTGGGGGGCAGCT < 41bp 1 0.223595349833778 1 0.0551818013191223 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702150 chr4:20702148 . . 0 19 hm5C_associated_SNPs_4868 0 0 1 0 2 PACRGL chr4:20702234 5'GT 20702234 Upstream 87bp
chr4 20702148 20702148 1 + G A rs558872339 20702151 + 20702131 20702171 41 CCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTG CCGAGTGCCGGTCATAAACCCCCCCCGGTGGGGGGCAGCTG < 41bp 1 0.207310567981003 1 0.0338912904262543 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702151 chr4:20702148 . . 0 18 hm5C_associated_SNPs_4869 0 0 1 0 2 PACRGL chr4:20702201 5'GT 20702201 Upstream 54bp
chr4 20702148 20702148 1 + G A rs558872339 20702151 + 20702131 20702171 41 CCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTG CCGAGTGCCGGTCATAAACCCCCCCCGGTGGGGGGCAGCTG < 41bp 1 0.207310567981003 1 0.0338912904262543 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702151 chr4:20702148 . . 0 18 hm5C_associated_SNPs_4869 0 0 1 0 2 PACRGL chr4:20702234 5'GT 20702234 Upstream 87bp
chr4 20702148 20702148 1 + G A rs558872339 20702152 + 20702132 20702172 41 CGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGG CGAGTGCCGGTCATAAACCCCCCCCGGTGGGGGGCAGCTGG < 41bp 1 0.207965134303786 1 0.092889815568924 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702152 chr4:20702148 . . 0 17 hm5C_associated_SNPs_4870 0 0 1 0 2 PACRGL chr4:20702201 5'GT 20702201 Upstream 54bp
chr4 20702148 20702148 1 + G A rs558872339 20702152 + 20702132 20702172 41 CGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGG CGAGTGCCGGTCATAAACCCCCCCCGGTGGGGGGCAGCTGG < 41bp 1 0.207965134303786 1 0.092889815568924 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702152 chr4:20702148 . . 0 17 hm5C_associated_SNPs_4870 0 0 1 0 2 PACRGL chr4:20702234 5'GT 20702234 Upstream 87bp
chr4 20702148 20702148 1 + G A rs558872339 20702153 + 20702133 20702173 41 GAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGGT GAGTGCCGGTCATAAACCCCCCCCGGTGGGGGGCAGCTGGT < 41bp 1 0.446038842007826 1 0.154254972934723 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702153 chr4:20702148 . . 0 16 hm5C_associated_SNPs_4871 0 0 1 0 2 PACRGL chr4:20702201 5'GT 20702201 Upstream 54bp
chr4 20702148 20702148 1 + G A rs558872339 20702153 + 20702133 20702173 41 GAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGGT GAGTGCCGGTCATAAACCCCCCCCGGTGGGGGGCAGCTGGT < 41bp 1 0.446038842007826 1 0.154254972934723 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702153 chr4:20702148 . . 0 16 hm5C_associated_SNPs_4871 0 0 1 0 2 PACRGL chr4:20702234 5'GT 20702234 Upstream 87bp
chr4 20702148 20702148 1 + G A rs558872339 20702154 + 20702134 20702174 41 AGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGGTG AGTGCCGGTCATAAACCCCCCCCGGTGGGGGGCAGCTGGTG < 41bp 1 0.547114837931944 1 0.253957271575928 experiment 0.905770324136111 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702154 chr4:20702148 . . 0 15 hm5C_associated_SNPs_4872 0 0 1 0 2 PACRGL chr4:20702201 5'GT 20702201 Upstream 54bp
chr4 20702148 20702148 1 + G A rs558872339 20702154 + 20702134 20702174 41 AGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGGTG AGTGCCGGTCATAAACCCCCCCCGGTGGGGGGCAGCTGGTG < 41bp 1 0.547114837931944 1 0.253957271575928 experiment 0.905770324136111 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702154 chr4:20702148 . . 0 15 hm5C_associated_SNPs_4872 0 0 1 0 2 PACRGL chr4:20702234 5'GT 20702234 Upstream 87bp
chr4 20702164 20702164 1 + G T rs76783569 20702150 + 20702130 20702170 41 ACCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCT ACCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGTGCAGCT < 41bp 1 0.194410385289672 1 0.14340204000473 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702150 chr4:20702164 . . 0 35 hm5C_associated_SNPs_4873 0 0 1 0 2 PACRGL chr4:20702201 5'GT 20702201 Upstream 38bp
chr4 20702164 20702164 1 + G T rs76783569 20702150 + 20702130 20702170 41 ACCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCT ACCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGTGCAGCT < 41bp 1 0.194410385289672 1 0.14340204000473 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702150 chr4:20702164 . . 0 35 hm5C_associated_SNPs_4873 0 0 1 0 2 PACRGL chr4:20702234 5'GT 20702234 Upstream 71bp
chr4 20702164 20702164 1 + G T rs76783569 20702151 + 20702131 20702171 41 CCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTG CCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGTGCAGCTG < 41bp 1 0.172643919810133 1 0.0760397613048553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702151 chr4:20702164 . . 0 34 hm5C_associated_SNPs_4874 0 0 1 0 2 PACRGL chr4:20702201 5'GT 20702201 Upstream 38bp
chr4 20702164 20702164 1 + G T rs76783569 20702151 + 20702131 20702171 41 CCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTG CCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGTGCAGCTG < 41bp 1 0.172643919810133 1 0.0760397613048553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702151 chr4:20702164 . . 0 34 hm5C_associated_SNPs_4874 0 0 1 0 2 PACRGL chr4:20702234 5'GT 20702234 Upstream 71bp
chr4 20702164 20702164 1 + G T rs76783569 20702152 + 20702132 20702172 41 CGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGG CGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGTGCAGCTGG < 41bp 1 0.191578060505604 1 0.170005738735199 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702152 chr4:20702164 . . 0 33 hm5C_associated_SNPs_4875 0 0 1 0 2 PACRGL chr4:20702201 5'GT 20702201 Upstream 38bp
chr4 20702164 20702164 1 + G T rs76783569 20702152 + 20702132 20702172 41 CGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGG CGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGTGCAGCTGG < 41bp 1 0.191578060505604 1 0.170005738735199 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702152 chr4:20702164 . . 0 33 hm5C_associated_SNPs_4875 0 0 1 0 2 PACRGL chr4:20702234 5'GT 20702234 Upstream 71bp
chr4 20702164 20702164 1 + G T rs76783569 20702153 + 20702133 20702173 41 GAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGGT GAGTGCCGGTCATAAGCCCCCCCCGGTGGGGTGCAGCTGGT < 41bp 1 0.493240522207438 1 0.361355006694794 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702153 chr4:20702164 . . 0 32 hm5C_associated_SNPs_4876 0 0 1 0 2 PACRGL chr4:20702201 5'GT 20702201 Upstream 38bp
chr4 20702164 20702164 1 + G T rs76783569 20702153 + 20702133 20702173 41 GAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGGT GAGTGCCGGTCATAAGCCCCCCCCGGTGGGGTGCAGCTGGT < 41bp 1 0.493240522207438 1 0.361355006694794 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702153 chr4:20702164 . . 0 32 hm5C_associated_SNPs_4876 0 0 1 0 2 PACRGL chr4:20702234 5'GT 20702234 Upstream 71bp
chr4 20702164 20702164 1 + G T rs76783569 20702154 + 20702134 20702174 41 AGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGGTG AGTGCCGGTCATAAGCCCCCCCCGGTGGGGTGCAGCTGGTG < 41bp 1 0.50890798136697 1 0.323438465595245 experiment 0.982184037266059 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702154 chr4:20702164 . . 0 31 hm5C_associated_SNPs_4877 0 0 1 0 2 PACRGL chr4:20702201 5'GT 20702201 Upstream 38bp
chr4 20702164 20702164 1 + G T rs76783569 20702154 + 20702134 20702174 41 AGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGGTG AGTGCCGGTCATAAGCCCCCCCCGGTGGGGTGCAGCTGGTG < 41bp 1 0.50890798136697 1 0.323438465595245 experiment 0.982184037266059 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702154 chr4:20702164 . . 0 31 hm5C_associated_SNPs_4877 0 0 1 0 2 PACRGL chr4:20702234 5'GT 20702234 Upstream 71bp
chr4 38870153 38870153 1 + C T rs139208981 38870133 + 38870113 38870153 41 CGCAGATCCCCAGGCCCCCTCCACCCAGTCGGCTAGCCCTC CGCAGATCCCCAGGCCCCCTCCACCCAGTCGGCTAGCCCTT < 41bp 1 0.279806759754385 1 0.22525429725647 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FAM114A1 ENSG00000197712 UTR5 Human protein_coding chr4:38870133 chr4:38870153 . . 0 41 hm5C_associated_SNPs_4880 0 0 1 0 1 FAM114A1 chr4:38870167 5'GT 38870167 Upstream 15bp
chr4 38937405 38937405 1 + T C rs200908766 38937401 + 38937381 38937421 41 GAAGTTTACGAATTCTTTAACCACTGTTGGGGTAAGATTAC GAAGTTTACGAATTCTTTAACCACCGTTGGGGTAAGATTAC < 41bp 1 0.0700977826970791 1 0.169721633195877 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38937401 chr4:38937405 synonymous SNV . 0 25 hm5C_associated_SNPs_4881 0 0 1 0 2 FAM114A1 chr4:38937339 3'AG 38937339 Downstream 67bp
chr4 38937405 38937405 1 + T C rs200908766 38937401 + 38937381 38937421 41 GAAGTTTACGAATTCTTTAACCACTGTTGGGGTAAGATTAC GAAGTTTACGAATTCTTTAACCACCGTTGGGGTAAGATTAC < 41bp 1 0.0700977826970791 1 0.169721633195877 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38937401 chr4:38937405 synonymous SNV . 0 25 hm5C_associated_SNPs_4881 0 0 1 0 2 FAM114A1 chr4:38937411 5'GT 38937411 Upstream 7bp
chr4 38937405 38937405 1 + T C rs200908766 38937402 + 38937382 38937422 41 AAGTTTACGAATTCTTTAACCACTGTTGGGGTAAGATTACA AAGTTTACGAATTCTTTAACCACCGTTGGGGTAAGATTACA < 41bp 1 0.434592959130178 1 0.219931811094284 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38937402 chr4:38937405 synonymous SNV . 0 24 hm5C_associated_SNPs_4882 0 0 1 0 2 FAM114A1 chr4:38937339 3'AG 38937339 Downstream 67bp
chr4 38937405 38937405 1 + T C rs200908766 38937402 + 38937382 38937422 41 AAGTTTACGAATTCTTTAACCACTGTTGGGGTAAGATTACA AAGTTTACGAATTCTTTAACCACCGTTGGGGTAAGATTACA < 41bp 1 0.434592959130178 1 0.219931811094284 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38937402 chr4:38937405 synonymous SNV . 0 24 hm5C_associated_SNPs_4882 0 0 1 0 2 FAM114A1 chr4:38937411 5'GT 38937411 Upstream 7bp
chr4 41652414 41652414 1 + A G rs75351013 41652424 + 41652404 41652444 41 TTATAGGTAGACGGGAAAGTCAGTGTGAATGGAGAGACGGT TTATAGGTAGGCGGGAAAGTCAGTGTGAATGGAGAGACGGT < 41bp 1 0.366368490893377 1 0.487499952316284 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41652424 chr4:41652414 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_4896 0 0 1 0 1 LIMCH1 chr4:41652410 3'AG 41652410 Downstream 5bp
chr4 41652415 41652415 1 + C T rs141393106 41652424 + 41652404 41652444 41 TTATAGGTAGACGGGAAAGTCAGTGTGAATGGAGAGACGGT TTATAGGTAGATGGGAAAGTCAGTGTGAATGGAGAGACGGT < 41bp 1 0.288237151591483 1 0.395561695098877 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41652424 chr4:41652415 synonymous SNV . 0 12 hm5C_associated_SNPs_4897 0 0 1 0 1 LIMCH1 chr4:41652410 3'AG 41652410 Downstream 6bp
chr4 41652442 41652442 1 + G A rs16853408 41652424 + 41652404 41652444 41 TTATAGGTAGACGGGAAAGTCAGTGTGAATGGAGAGACGGT TTATAGGTAGACGGGAAAGTCAGTGTGAATGGAGAGACAGT < 41bp 1 0.308046640528971 1 0.355908036231995 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41652424 chr4:41652442 synonymous SNV . 0 39 hm5C_associated_SNPs_4898 0 0 1 0 1 LIMCH1 chr4:41652410 3'AG 41652410 Downstream 33bp
chr4 42020142 42020142 1 + A G rs2581423 42020141 + 42020121 42020161 41 TTTACAGCAGAAGGTATAGGCACAGAACTCAAAGCTCCACT TTTACAGCAGAAGGTATAGGCGCAGAACTCAAAGCTCCACT < 41bp 1 0.58267571399461 1 0.182757049798965 experiment 0.83464857201078 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42020141 chr4:42020142 nonsynonymous SNV 0.593 0 22 hm5C_associated_SNPs_4908 0 0 1 0 2 SLC30A9 chr4:42020128 3'AG 42020128 Downstream 15bp
chr4 42020142 42020142 1 + A G rs2581423 42020141 + 42020121 42020161 41 TTTACAGCAGAAGGTATAGGCACAGAACTCAAAGCTCCACT TTTACAGCAGAAGGTATAGGCGCAGAACTCAAAGCTCCACT < 41bp 1 0.58267571399461 1 0.182757049798965 experiment 0.83464857201078 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42020141 chr4:42020142 nonsynonymous SNV 0.593 0 22 hm5C_associated_SNPs_4908 0 0 1 0 2 SLC30A9 chr4:42020187 5'GT 42020187 Upstream 46bp
chr4 42020142 42020142 1 + A G rs2581423 42020143 + 42020123 42020163 41 TACAGCAGAAGGTATAGGCACAGAACTCAAAGCTCCACTTA TACAGCAGAAGGTATAGGCGCAGAACTCAAAGCTCCACTTA < 41bp 1 0.702109597892252 1 0.599458336830139 experiment 0.595780804215495 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42020143 chr4:42020142 nonsynonymous SNV 0.593 0 20 hm5C_associated_SNPs_4909 0 0 1 0 2 SLC30A9 chr4:42020128 3'AG 42020128 Downstream 15bp
chr4 42020142 42020142 1 + A G rs2581423 42020143 + 42020123 42020163 41 TACAGCAGAAGGTATAGGCACAGAACTCAAAGCTCCACTTA TACAGCAGAAGGTATAGGCGCAGAACTCAAAGCTCCACTTA < 41bp 1 0.702109597892252 1 0.599458336830139 experiment 0.595780804215495 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42020143 chr4:42020142 nonsynonymous SNV 0.593 0 20 hm5C_associated_SNPs_4909 0 0 1 0 2 SLC30A9 chr4:42020187 5'GT 42020187 Upstream 46bp
chr4 44680721 44680721 1 + C A rs371867418 44680704 + 44680684 44680724 41 CGCGCCACGAGCCACTGGGGCCGCGCTTCTGGTGGCCCCGG CGCGCCACGAGCCACTGGGGCCGCGCTTCTGGTGGCCACGG < 41bp 1 0.672316444304908 1 0.169914990663528 experiment 0.655367111390183 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GUF1 ENSG00000151806 CDS Human protein_coding chr4:44680704 chr4:44680721 nonsynonymous SNV 0.002 0 38 hm5C_associated_SNPs_4910 0 0 0 0 1 GUF1 chr4:44680804 5'GT 44680804 Upstream 84bp
chr4 44680721 44680721 1 + C A rs371867418 44680719 + 44680699 44680739 41 TGGGGCCGCGCTTCTGGTGGCCCCGGGGCCCCGGTCCGCGC TGGGGCCGCGCTTCTGGTGGCCACGGGGCCCCGGTCCGCGC < 41bp 1 0.745063909370372 1 0.398023426532745 experiment 0.509872181259255 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GUF1 ENSG00000151806 CDS Human protein_coding chr4:44680719 chr4:44680721 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_4911 0 0 0 0 1 GUF1 chr4:44680804 5'GT 44680804 Upstream 84bp
chr4 48384676 48384676 1 + A G rs375732965 48384660 + 48384640 48384680 41 CAATTCTACAAGACGGGGTACTTTTAGTGATCAGGAACTTG CAATTCTACAAGACGGGGTACTTTTAGTGATCAGGAGCTTG < 41bp 1 0.0262366043777875 1 0.0228224396705627 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLAIN2 ENSG00000109171 CDS Human protein_coding chr4:48384660 chr4:48384676 synonymous SNV . 0 37 hm5C_associated_SNPs_4915 0 0 1 0 1 SLAIN2 chr4:48384585 3'AG 48384585 Downstream 92bp
chr4 54244053 54244053 1 + G C rs376917506 54244042 + 54244022 54244062 41 TCGAGCGCCTAGTGTCGGAGCTGAGCGGCGGGACCGGAGGG TCGAGCGCCTAGTGTCGGAGCTGAGCGGCGGCACCGGAGGG < 41bp 1 0.737444856188687 1 0.434040933847427 experiment 0.525110287622627 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FIP1L1 ENSG00000145216 CDS Human protein_coding chr4:54244042 chr4:54244053 synonymous SNV . 0 32 hm5C_associated_SNPs_4927 0 0 1 0 1 FIP1L1 chr4:54244090 5'GT 54244090 Upstream 38bp
chr4 54244053 54244053 1 + G C rs376917506 54244050 + 54244030 54244070 41 CTAGTGTCGGAGCTGAGCGGCGGGACCGGAGGGGATGAGGA CTAGTGTCGGAGCTGAGCGGCGGCACCGGAGGGGATGAGGA < 41bp 1 0.645264559108542 1 0.528575718402863 experiment 0.709470881782917 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FIP1L1 ENSG00000145216 CDS Human protein_coding chr4:54244050 chr4:54244053 synonymous SNV . 0 24 hm5C_associated_SNPs_4928 0 0 1 0 1 FIP1L1 chr4:54244090 5'GT 54244090 Upstream 38bp
chr4 56291565 56291565 1 + T G rs149833286 56291562 + 56291542 56291582 41 GTGACAATCATAGGAGGCATCGTTTTTTTGGCGTTTGCATT GTGACAATCATAGGAGGCATCGTGTTTTTGGCGTTTGCATT < 41bp 1 0.360381203371727 1 0.301049590110779 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TMEM165 ENSG00000134851 CDS Human protein_coding chr4:56291562 chr4:56291565 synonymous SNV . 0 24 hm5C_associated_SNPs_4929 0 0 1 0 1 TMEM165 chr4:56291543 3'AG 56291543 Downstream 23bp
chr4 57180271 57180271 1 + C T rs10018803 57180277 + 57180257 57180297 41 AACGGACACCCAGGCGAGGACAAGCCAACGTGGCACGAAGA AACGGACACCCAGGTGAGGACAAGCCAACGTGGCACGAAGA < 41bp 1 0.3439580845949 1 0.529977202415466 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57180277 chr4:57180271 synonymous SNV . 0 15 hm5C_associated_SNPs_4930 0 0 0 0 1 KIAA1211 chr4:57180206 3'AG 57180206 Downstream 66bp
chr4 57881715 57881715 1 + G A rs1713982 57881714 + 57881694 57881734 41 GAGGGAGATTCGGATCTATACGGATGCAGGCCGTATTTGTA GAGGGAGATTCGGATCTATACAGATGCAGGCCGTATTTGTA < 41bp 1 0.559040904129946 1 0.529812037944794 experiment 0.881918191740108 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57881714 chr4:57881715 synonymous SNV . 0 22 hm5C_associated_SNPs_4942 0 0 1 0 1 POLR2B chr4:57881668 3'AG 57881668 Downstream 48bp
chr4 76733389 76733389 1 + T C rs188970532 76733394 + 76733374 76733414 41 ATAGTACCATTGCCATTTTACAAACTGAGAAAGACAAACTA ATAGTACCATTGCCACTTTACAAACTGAGAAAGACAAACTA < 41bp 1 0.236632931278719 1 0.383988380432129 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USO1 ENSG00000138768 CDS Human protein_coding chr4:76733394 chr4:76733389 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_4947 0 0 1 0 1 USO1 chr4:76733313 3'AG 76733313 Downstream 77bp
chr4 77676306 77676306 1 + C A rs61741132 77676308 + 77676288 77676328 41 CCCACACTGTATGTGAGGCGCAGCTGGACAGTGAGGATCCC CCCACACTGTATGTGAGGAGCAGCTGGACAGTGAGGATCCC < 41bp 1 0.217914135051298 1 0.146052181720734 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77676308 chr4:77676306 nonsynonymous SNV 0.000 0 19 hm5C_associated_SNPs_4958 0 0 1 0 1 SHROOM3 chr4:77676345 5'GT 77676345 Upstream 40bp
chr4 77676307 77676307 1 + G A rs374194465 77676308 + 77676288 77676328 41 CCCACACTGTATGTGAGGCGCAGCTGGACAGTGAGGATCCC CCCACACTGTATGTGAGGCACAGCTGGACAGTGAGGATCCC < 41bp 1 0.222747218371803 1 0.0705729126930237 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77676308 chr4:77676307 synonymous SNV . 0 20 hm5C_associated_SNPs_4959 0 0 1 0 1 SHROOM3 chr4:77676345 5'GT 77676345 Upstream 39bp
chr4 77676309 77676309 1 + A C rs138661793 77676308 + 77676288 77676328 41 CCCACACTGTATGTGAGGCGCAGCTGGACAGTGAGGATCCC CCCACACTGTATGTGAGGCGCCGCTGGACAGTGAGGATCCC < 41bp 1 0.0839438584849766 1 0.0481798946857452 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77676308 chr4:77676309 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_4960 0 0 1 0 1 SHROOM3 chr4:77676345 5'GT 77676345 Upstream 37bp
chr4 79173616 79173616 1 + C A rs147709711 79173606 + 79173586 79173626 41 CTTGCAATCATGGGGAAGTCCGATGTACCCCCCAACCATGC CTTGCAATCATGGGGAAGTCCGATGTACCCACCAACCATGC < 41bp 1 0.19566296148871 1 0.71486896276474 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79173606 chr4:79173616 nonsynonymous SNV 0.001 0 31 hm5C_associated_SNPs_4961 0 0 1 0 2 FRAS1 chr4:79173546 3'AG 79173546 Downstream 71bp
chr4 79173616 79173616 1 + C A rs147709711 79173606 + 79173586 79173626 41 CTTGCAATCATGGGGAAGTCCGATGTACCCCCCAACCATGC CTTGCAATCATGGGGAAGTCCGATGTACCCACCAACCATGC < 41bp 1 0.19566296148871 1 0.71486896276474 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79173606 chr4:79173616 nonsynonymous SNV 0.001 0 31 hm5C_associated_SNPs_4961 0 0 1 0 2 FRAS1 chr4:79173705 5'GT 79173705 Upstream 90bp
chr4 79437035 79437035 1 + C G rs367736604 79437053 + 79437033 79437073 41 AGCGTGCGAGAGCCGAAGACCATCCAGCTCTACAAACACCT AGGGTGCGAGAGCCGAAGACCATCCAGCTCTACAAACACCT < 41bp 1 0.0525757275004126 1 0.107579469680786 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79437053 chr4:79437035 nonsynonymous SNV 0.132 0 3 hm5C_associated_SNPs_4964 0 0 1 0 1 FRAS1 chr4:79436953 3'AG 79436953 Downstream 83bp
chr4 79437047 79437047 1 + G A rs34806279 79437053 + 79437033 79437073 41 AGCGTGCGAGAGCCGAAGACCATCCAGCTCTACAAACACCT AGCGTGCGAGAGCCAAAGACCATCCAGCTCTACAAACACCT < 41bp 1 0.0560709446886101 1 0.127467393875122 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79437053 chr4:79437047 synonymous SNV . 0 15 hm5C_associated_SNPs_4965 0 0 1 0 1 FRAS1 chr4:79436953 3'AG 79436953 Downstream 95bp
chr4 79440589 79440589 1 + C A rs149604281 79440588 + 79440568 79440608 41 GGCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT GGCCTCCTTGGAGCACCACACAGAGATGGAGTTTTCTTTCT < 41bp 1 0.330424930744883 1 0.669543266296387 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440588 chr4:79440589 synonymous SNV . 0 22 hm5C_associated_SNPs_4967 0 0 1 0 1 FRAS1 chr4:79440635 5'GT 79440635 Upstream 47bp
chr4 87691080 87691080 1 + G A rs147000473 87691060 + 87691040 87691080 41 CTTTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTGATG CTTTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTGATA < 41bp 1 0.246676543665632 1 0.520238995552063 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN13 ENSG00000163629 CDS Human protein_coding chr4:87691060 chr4:87691080 nonsynonymous SNV 1.000 0 41 hm5C_associated_SNPs_4971 0 0 1 0 1 PTPN13 chr4:87691136 5'GT 87691136 Upstream 57bp
chr4 88047314 88047314 1 + G A rs139239111 88047316 + 88047296 88047336 41 CCCGCCACCCGTGTCCTCGTCCTCCCAGAAGCCAGCCAAGC CCCGCCACCCGTGTCCTCATCCTCCCAGAAGCCAGCCAAGC < 41bp 1 0.0482817364752648 1 0.261179387569427 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AFF1 ENSG00000172493 CDS Human protein_coding chr4:88047316 chr4:88047314 synonymous SNV . 0 19 hm5C_associated_SNPs_4972 0 0 1 0 1 AFF1 chr4:88047251 3'AG 88047251 Downstream 64bp
chr4 88047328 88047328 1 + C T rs144038967 88047316 + 88047296 88047336 41 CCCGCCACCCGTGTCCTCGTCCTCCCAGAAGCCAGCCAAGC CCCGCCACCCGTGTCCTCGTCCTCCCAGAAGCTAGCCAAGC < 41bp 1 0.0386403096169114 1 0.310991048812866 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AFF1 ENSG00000172493 CDS Human protein_coding chr4:88047316 chr4:88047328 nonsynonymous SNV 0.958 2 33 hm5C_associated_SNPs_4973 0 0 1 0 1 AFF1 chr4:88047251 3'AG 88047251 Downstream 78bp
chr4 95373070 95373070 1 + G A rs184767586 95373087 + 95373067 95373107 41 TGGGGACGGCGCCCTCACCGCGAGTCACTTGTCAGCCCTTG TGGAGACGGCGCCCTCACCGCGAGTCACTTGTCAGCCCTTG < 41bp 1 0.768552526201024 1 0.487583756446838 experiment 0.462894947597952 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDLIM5 ENSG00000163110 UTR5 Human protein_coding chr4:95373087 chr4:95373070 . . 0 4 hm5C_associated_SNPs_4975 0 0 1 0 1 PDLIM5 chr4:95373146 5'GT 95373146 Upstream 77bp
chr4 95373086 95373086 1 + G A rs28736374 95373087 + 95373067 95373107 41 TGGGGACGGCGCCCTCACCGCGAGTCACTTGTCAGCCCTTG TGGGGACGGCGCCCTCACCACGAGTCACTTGTCAGCCCTTG < 41bp 1 0.783658947931003 1 0.422379553318024 experiment 0.432682104137994 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDLIM5 ENSG00000163110 UTR5 Human protein_coding chr4:95373087 chr4:95373086 . . 0 20 hm5C_associated_SNPs_4976 0 0 1 0 1 PDLIM5 chr4:95373146 5'GT 95373146 Upstream 61bp
chr4 95373088 95373088 1 + G C rs147199893 95373087 + 95373067 95373107 41 TGGGGACGGCGCCCTCACCGCGAGTCACTTGTCAGCCCTTG TGGGGACGGCGCCCTCACCGCCAGTCACTTGTCAGCCCTTG < 41bp 1 0.563136084077193 1 0.228128463029861 experiment 0.873727831845614 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDLIM5 ENSG00000163110 UTR5 Human protein_coding chr4:95373087 chr4:95373088 . . 0 22 hm5C_associated_SNPs_4977 0 0 1 0 1 PDLIM5 chr4:95373146 5'GT 95373146 Upstream 59bp
chr4 95373093 95373093 1 + A C rs555460883 95373087 + 95373067 95373107 41 TGGGGACGGCGCCCTCACCGCGAGTCACTTGTCAGCCCTTG TGGGGACGGCGCCCTCACCGCGAGTCCCTTGTCAGCCCTTG < 41bp 1 0.774573364519095 1 0.676770508289337 experiment 0.450853270961809 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDLIM5 ENSG00000163110 UTR5 Human protein_coding chr4:95373087 chr4:95373093 . . 0 27 hm5C_associated_SNPs_4978 0 0 1 0 1 PDLIM5 chr4:95373146 5'GT 95373146 Upstream 54bp
chr4 103422880 103422880 1 + G A rs539675719 103422878 + 103422858 103422898 41 CCTCTTCCTTCTCCAGCCGGCAGGCCCGCGCCGCTTAGGAG CCTCTTCCTTCTCCAGCCGGCAAGCCCGCGCCGCTTAGGAG < 41bp 1 0.344838631608696 1 0.115247040987015 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LOC105377621 ENSG00000109320 UTR5 Human protein_coding chr4:103422878 chr4:103422880 . . 0 23 hm5C_associated_SNPs_4981 0 0 1 0 1 LOC105377621 chr4:103422945 5'GT 103422945 Upstream 66bp
chr4 103522114 103522114 1 + C T rs4648085 103522101 + 103522081 103522121 41 ATTCTCAACTTGTGAGGGATCTACTAGAAGTCACATCTGGT ATTCTCAACTTGTGAGGGATCTACTAGAAGTCATATCTGGT < 41bp 1 0.152035769307114 1 0.406553566455841 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103522101 chr4:103522114 nonsynonymous SNV 0.806 0 34 hm5C_associated_SNPs_4982 0 0 1 0 1 NFKB1 chr4:103522166 5'GT 103522166 Upstream 53bp
chr4 103806563 103806563 1 + T C rs151223492 103806576 + 103806556 103806596 41 CAGCTTATTGTAGGTGTTGGCGTTCTAAAACGGTAAGATGT CAGCTTACTGTAGGTGTTGGCGTTCTAAAACGGTAAGATGT < 41bp 1 0.0697270081996209 1 0.487855136394501 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CISD2 ENSG00000145354 CDS Human protein_coding chr4:103806576 chr4:103806563 synonymous SNV . 0 8 hm5C_associated_SNPs_4983 0 0 1 0 1 CISD2 chr4:103806587 5'GT 103806587 Upstream 25bp
chr4 106861764 106861764 1 + G C rs141847563 106861769 + 106861749 106861789 41 GCAAATGTAAAGAAGGATACCAGGGTGATGGACTGACTTGT GCAAATGTAAAGAAGCATACCAGGGTGATGGACTGACTTGT < 41bp 1 0.765044867821727 1 0.777466773986816 experiment 0.469910264356547 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPNT ENSG00000168743 CDS Human protein_coding chr4:106861769 chr4:106861764 nonsynonymous SNV 0.962 5 16 hm5C_associated_SNPs_4984 0 0 1 0 2 NPNT chr4:106861671 3'AG 106861671 Downstream 94bp
chr4 106861764 106861764 1 + G C rs141847563 106861769 + 106861749 106861789 41 GCAAATGTAAAGAAGGATACCAGGGTGATGGACTGACTTGT GCAAATGTAAAGAAGCATACCAGGGTGATGGACTGACTTGT < 41bp 1 0.765044867821727 1 0.777466773986816 experiment 0.469910264356547 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPNT ENSG00000168743 CDS Human protein_coding chr4:106861769 chr4:106861764 nonsynonymous SNV 0.962 5 16 hm5C_associated_SNPs_4984 0 0 1 0 2 NPNT chr4:106861793 5'GT 106861793 Upstream 30bp
chr4 109541728 109541728 1 + T G rs185289604 109541732 + 109541712 109541752 41 CTGGCAAAGGCTTTTTTCTTCCTCTTCCGGGGACGTTGTCT CTGGCAAAGGCTTTTTGCTTCCTCTTCCGGGGACGTTGTCT < 41bp 1 0.0636965054956582 1 0.0337621569633484 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL34 ENSG00000109475 UTR5 Human protein_coding chr4:109541732 chr4:109541728 . . 0 17 hm5C_associated_SNPs_4986 0 0 1 0 1 RPL34 chr4:109541756 5'GT 109541756 Upstream 29bp
chr4 110355129 110355129 1 + G C rs574733736 110355125 + 110355105 110355145 41 GAGCCGCAGCGCCCGCGGGCCCGGGTGCGGGCCCGGCGCCG GAGCCGCAGCGCCCGCGGGCCCGGCTGCGGGCCCGGCGCCG < 41bp 1 0.730883733358563 1 0.651132106781006 experiment 0.538232533282874 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SEC24B ENSG00000138802 CDS Human protein_coding chr4:110355125 chr4:110355129 nonsynonymous SNV 0.078 0 25 hm5C_associated_SNPs_4987 0 0 1 0 1 SEC24B chr4:110355158 5'GT 110355158 Upstream 30bp
chr4 110355129 110355129 1 + G C rs574733736 110355137 + 110355117 110355157 41 CCGCGGGCCCGGGTGCGGGCCCGGCGCCGCACCAGCAGAAC CCGCGGGCCCGGCTGCGGGCCCGGCGCCGCACCAGCAGAAC < 41bp 1 0.752377022503115 1 0.549386143684387 experiment 0.49524595499377 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SEC24B ENSG00000138802 CDS Human protein_coding chr4:110355137 chr4:110355129 nonsynonymous SNV 0.078 0 13 hm5C_associated_SNPs_4988 0 0 1 0 1 SEC24B chr4:110355158 5'GT 110355158 Upstream 30bp
chr4 110581363 110581363 1 + T A rs4698744 110581382 + 110581362 110581402 41 ATTTATAGACATGGCCTTCCCTTGGTAACACTTACCTTGCC AATTATAGACATGGCCTTCCCTTGGTAACACTTACCTTGCC < 41bp 1 0.614597281300396 1 0.712436079978943 experiment 0.770805437399208 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCUB ENSG00000005059 CDS Human protein_coding chr4:110581382 chr4:110581363 nonsynonymous SNV 0.983 0 2 hm5C_associated_SNPs_4989 0 0 0 0 1 MCUB chr4:110581351 3'AG 110581351 Downstream 13bp
chr4 113299008 113299008 1 + G A rs61747962 113298991 + 113298971 113299011 41 AGTGCAAGCAAGTGCTGGATCAGCTCTTGTTGGAAGCGCCA AGTGCAAGCAAGTGCTGGATCAGCTCTTGTTGGAAGCACCA < 41bp 1 0.591962949251403 1 0.288553059101105 experiment 0.816074101497193 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113298991 chr4:113299008 synonymous SNV . 0 38 hm5C_associated_SNPs_4990 0 0 0 0 1 ALPK1 chr4:113299054 5'GT 113299054 Upstream 47bp
chr4 115589302 115589302 1 + A G rs11098261 115589284 + 115589264 115589304 41 CTGAGCCATGGTGGTTTGAACAGTATTTTTGAAACTATATA CTGAGCCATGGTGGTTTGAACAGTATTTTTGAAACTATGTA < 41bp 1 0.477128488780213 1 0.0985077917575836 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UGT8 ENSG00000174607 CDS Human protein_coding chr4:115589284 chr4:115589302 nonsynonymous SNV 0.999 0 39 hm5C_associated_SNPs_4991 0 0 0 0 1 UGT8 chr4:115589241 3'AG 115589241 Downstream 62bp
chr4 123748473 123748473 1 + A C rs183060480 123748458 + 123748438 123748478 41 GGGGGCTTCTTCCTGCGCATCCACCCCGACGGCCGAGTTGA GGGGGCTTCTTCCTGCGCATCCACCCCGACGGCCGCGTTGA < 41bp 1 0.161951851832237 1 0.053317129611969 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGF2 ENSG00000138685 CDS Human protein_coding chr4:123748458 chr4:123748473 synonymous SNV . 0 36 hm5C_associated_SNPs_4993 0 0 0 0 1 FGF2 chr4:123748507 5'GT 123748507 Upstream 35bp
chr4 123748473 123748473 1 + A C rs183060480 123748462 + 123748442 123748482 41 GCTTCTTCCTGCGCATCCACCCCGACGGCCGAGTTGACGGG GCTTCTTCCTGCGCATCCACCCCGACGGCCGCGTTGACGGG < 41bp 1 0.738457131506184 1 0.0930190086364746 experiment 0.523085736987632 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGF2 ENSG00000138685 CDS Human protein_coding chr4:123748462 chr4:123748473 synonymous SNV . 0 32 hm5C_associated_SNPs_4994 0 0 0 0 1 FGF2 chr4:123748507 5'GT 123748507 Upstream 35bp
chr4 128748500 128748500 1 + A G rs563636394 128748508 + 128748488 128748528 41 ACATGGAGCATGAAGAGAGACCAAAAGCCTTAAATGACTTG ACATGGAGCATGGAGAGAGACCAAAAGCCTTAAATGACTTG < 41bp 1 0.368924962567058 1 0.323588490486145 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4L ENSG00000164070 CDS Human protein_coding chr4:128748508 chr4:128748500 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_4995 0 0 1 0 2 HSPA4L chr4:128748460 3'AG 128748460 Downstream 41bp
chr4 128748500 128748500 1 + A G rs563636394 128748508 + 128748488 128748528 41 ACATGGAGCATGAAGAGAGACCAAAAGCCTTAAATGACTTG ACATGGAGCATGGAGAGAGACCAAAAGCCTTAAATGACTTG < 41bp 1 0.368924962567058 1 0.323588490486145 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4L ENSG00000164070 CDS Human protein_coding chr4:128748508 chr4:128748500 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_4995 0 0 1 0 2 HSPA4L chr4:128748579 5'GT 128748579 Upstream 80bp
chr4 140265351 140265351 1 + C T rs373862543 140265344 + 140265324 140265364 41 TTATATCCATATACAGACATCCCCTGACAAGGTGGATTATG TTATATCCATATACAGACATCCCCTGATAAGGTGGATTATG < 41bp 1 0.0999704659763345 1 0.0243389010429382 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAA15 ENSG00000164134 CDS Human protein_coding chr4:140265344 chr4:140265351 synonymous SNV . 0 28 hm5C_associated_SNPs_4996 0 0 1 0 1 NAA15 chr4:140265340 3'AG 140265340 Downstream 12bp
chr4 146463822 146463822 1 + T C rs139872383 146463820 + 146463800 146463840 41 TGGACACAAACATGATGGCGCCTCCCCTGCCCTCAGAAATC TGGACACAAACATGATGGCGCCCCCCCTGCCCTCAGAAATC < 41bp 1 0.0600241447676365 1 0.0496829748153687 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146463820 chr4:146463822 synonymous SNV . 0 23 hm5C_associated_SNPs_4998 0 0 0 0 2 SMAD1 chr4:146463734 3'AG 146463734 Downstream 89bp
chr4 146463822 146463822 1 + T C rs139872383 146463820 + 146463800 146463840 41 TGGACACAAACATGATGGCGCCTCCCCTGCCCTCAGAAATC TGGACACAAACATGATGGCGCCCCCCCTGCCCTCAGAAATC < 41bp 1 0.0600241447676365 1 0.0496829748153687 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146463820 chr4:146463822 synonymous SNV . 0 23 hm5C_associated_SNPs_4998 0 0 0 0 2 SMAD1 chr4:146463850 5'GT 146463850 Upstream 29bp
chr4 147096888 147096888 1 + G T rs571469505 147096887 + 147096867 147096907 41 TGCCCCTGCCTCGGCGCTTTCGGTTTTGGCTGGGATCATCC TGCCCCTGCCTCGGCGCTTTCTGTTTTGGCTGGGATCATCC < 41bp 1 0.536083435932735 1 0.0686160326004028 experiment 0.92783312813453 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LSM6 ENSG00000164167 UTR5 Human protein_coding chr4:147096887 chr4:147096888 . . 0 22 hm5C_associated_SNPs_4999 0 0 1 0 1 LSM6 chr4:147096963 5'GT 147096963 Upstream 76bp
chr4 148796253 148796253 1 + C T rs538578376 148796249 + 148796229 148796269 41 AGACAGAATCCCAAGGACCACAAACGAGCAAGTCAGTTTAC AGACAGAATCCCAAGGACCACAAATGAGCAAGTCAGTTTAC < 41bp 1 0.348768857829901 1 0.11086368560791 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP10 ENSG00000071205 CDS Human protein_coding chr4:148796249 chr4:148796253 stopgain 0.997 1 25 hm5C_associated_SNPs_5000 0 0 1 0 2 ARHGAP10 chr4:148796172 3'AG 148796172 Downstream 82bp
chr4 148796253 148796253 1 + C T rs538578376 148796249 + 148796229 148796269 41 AGACAGAATCCCAAGGACCACAAACGAGCAAGTCAGTTTAC AGACAGAATCCCAAGGACCACAAATGAGCAAGTCAGTTTAC < 41bp 1 0.348768857829901 1 0.11086368560791 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP10 ENSG00000071205 CDS Human protein_coding chr4:148796249 chr4:148796253 stopgain 0.997 1 25 hm5C_associated_SNPs_5000 0 0 1 0 2 ARHGAP10 chr4:148796301 5'GT 148796301 Upstream 49bp
chr4 160264503 160264503 1 + C A rs188622665 160264487 + 160264467 160264507 41 TGAGAAGCTAAGGATGATTGCAAAAGAAATTCGTCACGTTG TGAGAAGCTAAGGATGATTGCAAAAGAAATTCGTCAAGTTG < 41bp 1 0.584895992360325 1 0.565217554569244 experiment 0.830208015279351 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160264487 chr4:160264503 nonsynonymous SNV 0.972 1 37 hm5C_associated_SNPs_5009 0 0 1 0 2 RAPGEF2 chr4:160264433 3'AG 160264433 Downstream 71bp
chr4 160264503 160264503 1 + C A rs188622665 160264487 + 160264467 160264507 41 TGAGAAGCTAAGGATGATTGCAAAAGAAATTCGTCACGTTG TGAGAAGCTAAGGATGATTGCAAAAGAAATTCGTCAAGTTG < 41bp 1 0.584895992360325 1 0.565217554569244 experiment 0.830208015279351 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160264487 chr4:160264503 nonsynonymous SNV 0.972 1 37 hm5C_associated_SNPs_5009 0 0 1 0 2 RAPGEF2 chr4:160264556 5'GT 160264556 Upstream 54bp
chr4 165960681 165960681 1 + T C rs541467179 165960668 + 165960648 165960688 41 CACTTAGATTCAGACGGGCTCGGCCGGGCGCGGTGGCTCAC CACTTAGATTCAGACGGGCTCGGCCGGGCGCGGCGGCTCAC < 41bp 1 0.586150312293573 1 0.640080809593201 experiment 0.827699375412853 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM60 ENSG00000176979 UTR5 Human protein_coding chr4:165960668 chr4:165960681 . . 0 34 hm5C_associated_SNPs_5010 0 0 0 0 2 TRIM60 chr4:165960594 3'AG 165960594 Downstream 88bp
chr4 165960681 165960681 1 + T C rs541467179 165960668 + 165960648 165960688 41 CACTTAGATTCAGACGGGCTCGGCCGGGCGCGGTGGCTCAC CACTTAGATTCAGACGGGCTCGGCCGGGCGCGGCGGCTCAC < 41bp 1 0.586150312293573 1 0.640080809593201 experiment 0.827699375412853 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM60 ENSG00000176979 UTR5 Human protein_coding chr4:165960668 chr4:165960681 . . 0 34 hm5C_associated_SNPs_5010 0 0 0 0 2 TRIM60 chr4:165960767 5'GT 165960767 Upstream 87bp
chr4 165960681 165960681 1 + T C rs541467179 165960698 + 165960678 165960718 41 CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGA CGGCGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGA < 41bp 1 0.489436190775741 1 0.169619202613831 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM60 ENSG00000176979 UTR5 Human protein_coding chr4:165960698 chr4:165960681 . . 0 4 hm5C_associated_SNPs_5011 0 0 0 0 2 TRIM60 chr4:165960594 3'AG 165960594 Downstream 88bp
chr4 165960681 165960681 1 + T C rs541467179 165960698 + 165960678 165960718 41 CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGA CGGCGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGA < 41bp 1 0.489436190775741 1 0.169619202613831 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM60 ENSG00000176979 UTR5 Human protein_coding chr4:165960698 chr4:165960681 . . 0 4 hm5C_associated_SNPs_5011 0 0 0 0 2 TRIM60 chr4:165960767 5'GT 165960767 Upstream 87bp
chr4 165960681 165960681 1 + T C rs541467179 165960699 + 165960679 165960719 41 GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAG GGCGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAG < 41bp 1 0.317473891218012 1 0.11124461889267 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM60 ENSG00000176979 UTR5 Human protein_coding chr4:165960699 chr4:165960681 . . 0 3 hm5C_associated_SNPs_5012 0 0 0 0 2 TRIM60 chr4:165960594 3'AG 165960594 Downstream 88bp
chr4 165960681 165960681 1 + T C rs541467179 165960699 + 165960679 165960719 41 GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAG GGCGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAG < 41bp 1 0.317473891218012 1 0.11124461889267 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM60 ENSG00000176979 UTR5 Human protein_coding chr4:165960699 chr4:165960681 . . 0 3 hm5C_associated_SNPs_5012 0 0 0 0 2 TRIM60 chr4:165960767 5'GT 165960767 Upstream 87bp
chr4 169630204 169630204 1 + T G rs58395080 169630201 + 169630181 169630221 41 GAGATTTGCACCCTAGTTATCGCTGAGACTTTCCCTGAAGA GAGATTTGCACCCTAGTTATCGCGGAGACTTTCCCTGAAGA < 41bp 1 0.558127625415437 1 0.908073008060455 experiment 0.883744749169125 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PALLD ENSG00000129116 CDS Human protein_coding chr4:169630201 chr4:169630204 synonymous SNV . 0 24 hm5C_associated_SNPs_5015 1 0 0 0 2 PALLD chr4:169630179 3'AG 169630179 Downstream 26bp
chr4 169630204 169630204 1 + T G rs58395080 169630201 + 169630181 169630221 41 GAGATTTGCACCCTAGTTATCGCTGAGACTTTCCCTGAAGA GAGATTTGCACCCTAGTTATCGCGGAGACTTTCCCTGAAGA < 41bp 1 0.558127625415437 1 0.908073008060455 experiment 0.883744749169125 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PALLD ENSG00000129116 CDS Human protein_coding chr4:169630201 chr4:169630204 synonymous SNV . 0 24 hm5C_associated_SNPs_5015 1 0 0 0 2 PALLD chr4:169630298 5'GT 169630298 Upstream 95bp
chr4 178262679 178262679 1 + G A rs114671957 178262698 + 178262678 178262718 41 CGTCCTAATTGTGGTCAGTGCCACTGCAGAATAACTGTGTG CATCCTAATTGTGGTCAGTGCCACTGCAGAATAACTGTGTG < 41bp 1 0.18914778563661 1 0.282325953245163 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178262698 chr4:178262679 nonsynonymous SNV 0.962 2 2 hm5C_associated_SNPs_5026 0 0 1 0 1 NEIL3 chr4:178262630 3'AG 178262630 Downstream 50bp
chr4 178262683 178262683 1 + T C rs17676249 178262698 + 178262678 178262718 41 CGTCCTAATTGTGGTCAGTGCCACTGCAGAATAACTGTGTG CGTCCCAATTGTGGTCAGTGCCACTGCAGAATAACTGTGTG < 41bp 1 0.204619198882386 1 0.377485007047653 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178262698 chr4:178262683 synonymous SNV . 0 6 hm5C_associated_SNPs_5027 0 0 1 0 1 NEIL3 chr4:178262630 3'AG 178262630 Downstream 54bp
chr4 178262683 178262683 1 + T C rs17676249 178262701 + 178262681 178262721 41 CCTAATTGTGGTCAGTGCCACTGCAGAATAACTGTGTGCCG CCCAATTGTGGTCAGTGCCACTGCAGAATAACTGTGTGCCG < 41bp 1 0.778568766964739 1 0.388979643583298 experiment 0.442862466070521 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178262701 chr4:178262683 synonymous SNV . 0 3 hm5C_associated_SNPs_5028 0 0 1 0 1 NEIL3 chr4:178262630 3'AG 178262630 Downstream 54bp
chr4 187125524 187125524 1 + C G rs4997685 187125527 + 187125507 187125547 41 TACGCTGGCGTAAGAGGCGGCGGTGGAGGCGCTACGCTGGC TACGCTGGCGTAAGAGGGGGCGGTGGAGGCGCTACGCTGGC < 41bp 1 0.56068969762909 1 0.790239930152893 experiment 0.87862060474182 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CYP4V2 ENSG00000145476 intronic Human protein_coding chr4:187125527 chr4:187125524 . . 0 18 hm5C_associated_SNPs_5030 0 0 0 0 1 CYP4V2 chr4:187125611 5'GT 187125611 Upstream 88bp
chr4 187125524 187125524 1 + C G rs4997685 187125536 + 187125516 187125556 41 GTAAGAGGCGGCGGTGGAGGCGCTACGCTGGCGTAAGAGGT GTAAGAGGGGGCGGTGGAGGCGCTACGCTGGCGTAAGAGGT < 41bp 1 0.595827401883388 1 0.774786710739136 experiment 0.808345196233225 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CYP4V2 ENSG00000145476 intronic Human protein_coding chr4:187125536 chr4:187125524 . . 0 9 hm5C_associated_SNPs_5031 0 0 0 0 1 CYP4V2 chr4:187125611 5'GT 187125611 Upstream 88bp
chr4 187125535 187125535 1 + G A rs4997684 187125527 + 187125507 187125547 41 TACGCTGGCGTAAGAGGCGGCGGTGGAGGCGCTACGCTGGC TACGCTGGCGTAAGAGGCGGCGGTGGAGACGCTACGCTGGC < 41bp 1 0.500367129069755 1 0.815284907817841 experiment 0.99926574186049 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CYP4V2 ENSG00000145476 intronic Human protein_coding chr4:187125527 chr4:187125535 . . 0 29 hm5C_associated_SNPs_5032 0 0 0 0 1 CYP4V2 chr4:187125611 5'GT 187125611 Upstream 77bp
chr4 187125535 187125535 1 + G A rs4997684 187125536 + 187125516 187125556 41 GTAAGAGGCGGCGGTGGAGGCGCTACGCTGGCGTAAGAGGT GTAAGAGGCGGCGGTGGAGACGCTACGCTGGCGTAAGAGGT < 41bp 1 0.555774631581749 1 0.833675444126129 experiment 0.888450736836502 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CYP4V2 ENSG00000145476 intronic Human protein_coding chr4:187125536 chr4:187125535 . . 0 20 hm5C_associated_SNPs_5033 0 0 0 0 1 CYP4V2 chr4:187125611 5'GT 187125611 Upstream 77bp
chr4 187125556 187125556 1 + T C rs57994834 187125536 + 187125516 187125556 41 GTAAGAGGCGGCGGTGGAGGCGCTACGCTGGCGTAAGAGGT GTAAGAGGCGGCGGTGGAGGCGCTACGCTGGCGTAAGAGGC < 41bp 1 0.592123029149942 1 0.765333652496338 experiment 0.815753941700116 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CYP4V2 ENSG00000145476 intronic Human protein_coding chr4:187125536 chr4:187125556 . . 0 41 hm5C_associated_SNPs_5034 0 0 0 0 1 CYP4V2 chr4:187125611 5'GT 187125611 Upstream 56bp
chr5 223669 223669 1 + A G rs144599870 223682 + 223662 223702 41 ATCTGCTAAAGTTTCAGATTCCGTAAGTTCATGCTTTTTGT ATCTGCTGAAGTTTCAGATTCCGTAAGTTCATGCTTTTTGT < 41bp 1 0.201893477144209 1 0.0791900455951691 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SDHA ENSG00000073578 CDS Human protein_coding chr5:223682 chr5:223669 nonsynonymous SNV 1.000 0 8 hm5C_associated_SNPs_5035 4 0 1 0 2 SDHA chr5:223597 3'AG 223597 Downstream 73bp
chr5 223669 223669 1 + A G rs144599870 223682 + 223662 223702 41 ATCTGCTAAAGTTTCAGATTCCGTAAGTTCATGCTTTTTGT ATCTGCTGAAGTTTCAGATTCCGTAAGTTCATGCTTTTTGT < 41bp 1 0.201893477144209 1 0.0791900455951691 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SDHA ENSG00000073578 CDS Human protein_coding chr5:223682 chr5:223669 nonsynonymous SNV 1.000 0 8 hm5C_associated_SNPs_5035 4 0 1 0 2 SDHA chr5:223683 5'GT 223683 Upstream 15bp
chr5 223679 223679 1 + A G rs80207011 223682 + 223662 223702 41 ATCTGCTAAAGTTTCAGATTCCGTAAGTTCATGCTTTTTGT ATCTGCTAAAGTTTCAGGTTCCGTAAGTTCATGCTTTTTGT < 41bp 1 0.127234043864254 1 0.0692955255508423 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SDHA ENSG00000073578 CDS Human protein_coding chr5:223682 chr5:223679 nonsynonymous SNV 0.969 0 18 hm5C_associated_SNPs_5036 4 0 1 0 2 SDHA chr5:223597 3'AG 223597 Downstream 83bp
chr5 223679 223679 1 + A G rs80207011 223682 + 223662 223702 41 ATCTGCTAAAGTTTCAGATTCCGTAAGTTCATGCTTTTTGT ATCTGCTAAAGTTTCAGGTTCCGTAAGTTCATGCTTTTTGT < 41bp 1 0.127234043864254 1 0.0692955255508423 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SDHA ENSG00000073578 CDS Human protein_coding chr5:223682 chr5:223679 nonsynonymous SNV 0.969 0 18 hm5C_associated_SNPs_5036 4 0 1 0 2 SDHA chr5:223683 5'GT 223683 Upstream 5bp
chr5 1036435 1036435 1 + G A rs73026757 1036447 + 1036427 1036467 41 GAGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGG GAGAACACAGAGCGCAGAAACCACTACCTGGACCTCGCCGG < 41bp 1 0.15889929879173 1 0.0944141149520874 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036447 chr5:1036435 synonymous SNV . 0 9 hm5C_associated_SNPs_5040 0 0 0 0 2 NKD2 chr5:1036372 3'AG 1036372 Downstream 64bp
chr5 1036435 1036435 1 + G A rs73026757 1036447 + 1036427 1036467 41 GAGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGG GAGAACACAGAGCGCAGAAACCACTACCTGGACCTCGCCGG < 41bp 1 0.15889929879173 1 0.0944141149520874 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036447 chr5:1036435 synonymous SNV . 0 9 hm5C_associated_SNPs_5040 0 0 0 0 2 NKD2 chr5:1036499 5'GT 1036499 Upstream 65bp
chr5 1036435 1036435 1 + G A rs73026757 1036448 + 1036428 1036468 41 AGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGGG AGAACACAGAGCGCAGAAACCACTACCTGGACCTCGCCGGG < 41bp 1 0.537917800840682 1 0.21526575088501 experiment 0.924164398318637 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036448 chr5:1036435 synonymous SNV . 0 8 hm5C_associated_SNPs_5041 0 0 0 0 2 NKD2 chr5:1036372 3'AG 1036372 Downstream 64bp
chr5 1036435 1036435 1 + G A rs73026757 1036448 + 1036428 1036468 41 AGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGGG AGAACACAGAGCGCAGAAACCACTACCTGGACCTCGCCGGG < 41bp 1 0.537917800840682 1 0.21526575088501 experiment 0.924164398318637 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036448 chr5:1036435 synonymous SNV . 0 8 hm5C_associated_SNPs_5041 0 0 0 0 2 NKD2 chr5:1036499 5'GT 1036499 Upstream 65bp
chr5 5303774 5303774 1 + C G rs73738806 5303760 + 5303740 5303780 41 CCAACCCCTCGGCCAGAGCGCAGCTGCTGCCCGACGCTGTC CCAACCCCTCGGCCAGAGCGCAGCTGCTGCCCGAGGCTGTC < 41bp 1 0.466255022784897 1 0.31038561463356 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5303760 chr5:5303774 nonsynonymous SNV 0.000 0 35 hm5C_associated_SNPs_5042 0 0 0 0 1 ADAMTS16 chr5:5303685 3'AG 5303685 Downstream 90bp
chr5 6651960 6651960 1 + T C rs573358282 6651967 + 6651947 6651987 41 TTCCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGGAGG TTCCTAAGGTGCTCAATTTACCCATTTCTGATGCGAGGAGG < 41bp 1 0.249418782813529 1 0.0972403883934021 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6651967 chr5:6651960 nonsynonymous SNV 0.660 4 14 hm5C_associated_SNPs_5044 0 0 0 0 1 SRD5A1 chr5:6651955 3'AG 6651955 Downstream 6bp
chr5 6651960 6651960 1 + T C rs573358282 6651968 + 6651948 6651988 41 TCCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGGAGGA TCCTAAGGTGCTCAATTTACCCATTTCTGATGCGAGGAGGA < 41bp 1 0.0495116059560864 1 0.207297444343567 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6651968 chr5:6651960 nonsynonymous SNV 0.660 4 13 hm5C_associated_SNPs_5045 0 0 0 0 1 SRD5A1 chr5:6651955 3'AG 6651955 Downstream 6bp
chr5 6651960 6651960 1 + T C rs573358282 6651969 + 6651949 6651989 41 CCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGGAGGAA CCTAAGGTGCTCAATTTACCCATTTCTGATGCGAGGAGGAA < 41bp 1 0.0666228898476289 1 0.101791441440582 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6651969 chr5:6651960 nonsynonymous SNV 0.660 4 12 hm5C_associated_SNPs_5046 0 0 0 0 1 SRD5A1 chr5:6651955 3'AG 6651955 Downstream 6bp
chr5 6651970 6651970 1 + A G rs3822430 6651967 + 6651947 6651987 41 TTCCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGGAGG TTCCTAAGGTGCTTAATTTACCCGTTTCTGATGCGAGGAGG < 41bp 1 0.463189195032419 1 0.0854174792766571 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6651967 chr5:6651970 synonymous SNV . 0 24 hm5C_associated_SNPs_5047 0 0 0 0 1 SRD5A1 chr5:6651955 3'AG 6651955 Downstream 16bp
chr5 6651970 6651970 1 + A G rs3822430 6651968 + 6651948 6651988 41 TCCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGGAGGA TCCTAAGGTGCTTAATTTACCCGTTTCTGATGCGAGGAGGA < 41bp 1 0.0774797683823072 1 0.121767580509186 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6651968 chr5:6651970 synonymous SNV . 0 23 hm5C_associated_SNPs_5048 0 0 0 0 1 SRD5A1 chr5:6651955 3'AG 6651955 Downstream 16bp
chr5 6651970 6651970 1 + A G rs3822430 6651969 + 6651949 6651989 41 CCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGGAGGAA CCTAAGGTGCTTAATTTACCCGTTTCTGATGCGAGGAGGAA < 41bp 1 0.0675613105192373 1 0.0495799481868744 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6651969 chr5:6651970 synonymous SNV . 0 22 hm5C_associated_SNPs_5049 0 0 0 0 1 SRD5A1 chr5:6651955 3'AG 6651955 Downstream 16bp
chr5 6652009 6652009 1 + G A rs8192186 6652008 + 6651988 6652028 41 AAAGCCTATGCCACTGTTGGCGTGTACAATGGCGATTATGT AAAGCCTATGCCACTGTTGGCATGTACAATGGCGATTATGT < 41bp 1 0.115355323453934 1 0.233816206455231 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6652008 chr5:6652009 synonymous SNV . 0 22 hm5C_associated_SNPs_5050 0 0 0 0 1 SRD5A1 chr5:6651955 3'AG 6651955 Downstream 55bp
chr5 6746335 6746335 1 + A G rs529673619 6746347 + 6746327 6746367 41 TTGCATCCAAGAATTGATGCCCGGAGAGCTGATGAAAACCT TTGCATCCGAGAATTGATGCCCGGAGAGCTGATGAAAACCT < 41bp 1 0.482669912636928 1 0.39286869764328 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6746347 chr5:6746335 synonymous SNV . 0 9 hm5C_associated_SNPs_5051 0 0 1 0 1 PAPD7 chr5:6746327 3'AG 6746327 Downstream 9bp
chr5 7885868 7885868 1 + A G rs199762141 7885852 + 7885832 7885872 41 CAGCCTGGAGATGCCTTCAGCGTGATCTGCCCTAACAGTGA CAGCCTGGAGATGCCTTCAGCGTGATCTGCCCTAACGGTGA < 41bp 1 0.743973287637513 1 0.441746652126312 experiment 0.512053424724973 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885852 chr5:7885868 nonsynonymous SNV 0.990 1 37 hm5C_associated_SNPs_5058 0 0 1 0 1 MTRR chr5:7885814 3'AG 7885814 Downstream 55bp
chr5 7885868 7885868 1 + A G rs199762141 7885861 + 7885841 7885881 41 GATGCCTTCAGCGTGATCTGCCCTAACAGTGATTCTGAGGT GATGCCTTCAGCGTGATCTGCCCTAACGGTGATTCTGAGGT < 41bp 1 0.273177328661213 1 0.0423588454723358 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885861 chr5:7885868 nonsynonymous SNV 0.990 1 28 hm5C_associated_SNPs_5059 0 0 1 0 1 MTRR chr5:7885814 3'AG 7885814 Downstream 55bp
chr5 7885868 7885868 1 + A G rs199762141 7885862 + 7885842 7885882 41 ATGCCTTCAGCGTGATCTGCCCTAACAGTGATTCTGAGGTA ATGCCTTCAGCGTGATCTGCCCTAACGGTGATTCTGAGGTA < 41bp 1 0.22388191637724 1 0.0582344830036163 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885862 chr5:7885868 nonsynonymous SNV 0.990 1 27 hm5C_associated_SNPs_5060 0 0 1 0 1 MTRR chr5:7885814 3'AG 7885814 Downstream 55bp
chr5 7885868 7885868 1 + A G rs199762141 7885863 + 7885843 7885883 41 TGCCTTCAGCGTGATCTGCCCTAACAGTGATTCTGAGGTAC TGCCTTCAGCGTGATCTGCCCTAACGGTGATTCTGAGGTAC < 41bp 1 0.362801821652662 1 0.0843493044376373 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885863 chr5:7885868 nonsynonymous SNV 0.990 1 26 hm5C_associated_SNPs_5061 0 0 1 0 1 MTRR chr5:7885814 3'AG 7885814 Downstream 55bp
chr5 7889304 7889304 1 + C T rs2287780 7889293 + 7889273 7889313 41 GTGCAGTAAACAAGGGGCAGCCGATTATAGCCGCTTTGTAC GTGCAGTAAACAAGGGGCAGCCGATTATAGCTGCTTTGTAC < 41bp 1 0.225766639492119 1 0.274121224880219 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7889293 chr5:7889304 nonsynonymous SNV 0.029 3 32 hm5C_associated_SNPs_5062 2 0 1 0 2 MTRR chr5:7889208 3'AG 7889208 Downstream 97bp
chr5 7889304 7889304 1 + C T rs2287780 7889293 + 7889273 7889313 41 GTGCAGTAAACAAGGGGCAGCCGATTATAGCCGCTTTGTAC GTGCAGTAAACAAGGGGCAGCCGATTATAGCTGCTTTGTAC < 41bp 1 0.225766639492119 1 0.274121224880219 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7889293 chr5:7889304 nonsynonymous SNV 0.029 3 32 hm5C_associated_SNPs_5062 2 0 1 0 2 MTRR chr5:7889388 5'GT 7889388 Upstream 85bp
chr5 7897283 7897283 1 + G A rs12347 7897284 + 7897264 7897304 41 AAGCCCCAGCAAAGTATGTGCAAGACAACATCCAGCTTCAT AAGCCCCAGCAAAGTATGTACAAGACAACATCCAGCTTCAT < 41bp 1 0.722848673418163 1 0.100762814283371 experiment 0.554302653163674 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7897284 chr5:7897283 synonymous SNV . 0 20 hm5C_associated_SNPs_5063 2 0 1 2 1 MTRR chr5:7897360 5'GT 7897360 Upstream 78bp
chr5 10387149 10387149 1 + A G rs141255096 10387150 + 10387130 10387170 41 CTGGCTCCGTGAGCTCACTACTGACGCTGCCATTAGATATG CTGGCTCCGTGAGCTCACTGCTGACGCTGCCATTAGATATG < 41bp 1 0.244900847497189 1 0.201313078403473 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10387150 chr5:10387149 synonymous SNV . 0 20 hm5C_associated_SNPs_5064 0 0 1 0 2 MARCH6 chr5:10387106 3'AG 10387106 Downstream 44bp
chr5 10387149 10387149 1 + A G rs141255096 10387150 + 10387130 10387170 41 CTGGCTCCGTGAGCTCACTACTGACGCTGCCATTAGATATG CTGGCTCCGTGAGCTCACTGCTGACGCTGCCATTAGATATG < 41bp 1 0.244900847497189 1 0.201313078403473 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10387150 chr5:10387149 synonymous SNV . 0 20 hm5C_associated_SNPs_5064 0 0 1 0 2 MARCH6 chr5:10387178 5'GT 10387178 Upstream 30bp
chr5 10387161 10387161 1 + A G rs116788481 10387150 + 10387130 10387170 41 CTGGCTCCGTGAGCTCACTACTGACGCTGCCATTAGATATG CTGGCTCCGTGAGCTCACTACTGACGCTGCCGTTAGATATG < 41bp 1 0.267860563345976 1 0.126073837280273 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10387150 chr5:10387161 synonymous SNV . 0 32 hm5C_associated_SNPs_5065 0 0 1 0 2 MARCH6 chr5:10387106 3'AG 10387106 Downstream 56bp
chr5 10387161 10387161 1 + A G rs116788481 10387150 + 10387130 10387170 41 CTGGCTCCGTGAGCTCACTACTGACGCTGCCATTAGATATG CTGGCTCCGTGAGCTCACTACTGACGCTGCCGTTAGATATG < 41bp 1 0.267860563345976 1 0.126073837280273 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10387150 chr5:10387161 synonymous SNV . 0 32 hm5C_associated_SNPs_5065 0 0 1 0 2 MARCH6 chr5:10387178 5'GT 10387178 Upstream 18bp
chr5 10415633 10415633 1 + C T rs182494860 10415639 + 10415619 10415659 41 AATGTCGTTTTGGACGGGGACTGCCAAAATCCATGAGCTCT AATGTCGTTTTGGATGGGGACTGCCAAAATCCATGAGCTCT < 41bp 1 0.217237135751908 1 0.25016313791275 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10415639 chr5:10415633 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_5066 0 0 1 0 1 MARCH6 chr5:10415600 3'AG 10415600 Downstream 34bp
chr5 10417411 10417411 1 + G A rs541401299 10417426 + 10417406 10417446 41 GTGCTGTTGGCTGGAGTTGTCCCTCTCCTTCTGGGGCTCCT GTGCTATTGGCTGGAGTTGTCCCTCTCCTTCTGGGGCTCCT < 41bp 1 0.156095133399883 1 0.11194971203804 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10417426 chr5:10417411 synonymous SNV . 0 6 hm5C_associated_SNPs_5067 0 0 1 0 1 MARCH6 chr5:10417382 3'AG 10417382 Downstream 30bp
chr5 10417411 10417411 1 + G A rs541401299 10417428 + 10417408 10417448 41 GCTGTTGGCTGGAGTTGTCCCTCTCCTTCTGGGGCTCCTGT GCTATTGGCTGGAGTTGTCCCTCTCCTTCTGGGGCTCCTGT < 41bp 1 0.246887226673128 1 0.0339217782020569 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10417428 chr5:10417411 synonymous SNV . 0 4 hm5C_associated_SNPs_5068 0 0 1 0 1 MARCH6 chr5:10417382 3'AG 10417382 Downstream 30bp
chr5 14498727 14498727 1 + G A rs26107 14498746 + 14498726 14498766 41 CGTCGGCCAGCCTGAGGGTCCTAGGTAAGCACCGTGCAACG CATCGGCCAGCCTGAGGGTCCTAGGTAAGCACCGTGCAACG < 41bp 1 0.396297213766268 1 0.20679646730423 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14498746 chr5:14498727 synonymous SNV . 0 2 hm5C_associated_SNPs_5075 0 0 1 0 2 TRIO chr5:14498628 3'AG 14498628 Downstream 100bp
chr5 14498727 14498727 1 + G A rs26107 14498746 + 14498726 14498766 41 CGTCGGCCAGCCTGAGGGTCCTAGGTAAGCACCGTGCAACG CATCGGCCAGCCTGAGGGTCCTAGGTAAGCACCGTGCAACG < 41bp 1 0.396297213766268 1 0.20679646730423 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14498746 chr5:14498727 synonymous SNV . 0 2 hm5C_associated_SNPs_5075 0 0 1 0 2 TRIO chr5:14498749 5'GT 14498749 Upstream 23bp
chr5 17275364 17275364 1 + T C rs73756114 17275370 + 17275350 17275390 41 AAGAAGGGCTACAATGTGAACGACGAGAAAGCCAAGGAGAA AAGAAGGGCTACAACGTGAACGACGAGAAAGCCAAGGAGAA < 41bp 1 0.565068357713128 1 0.281786471605301 experiment 0.869863284573745 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275370 chr5:17275364 synonymous SNV . 0 15 hm5C_associated_SNPs_5090 0 0 1 0 1 BASP1 chr5:17275317 3'AG 17275317 Downstream 48bp
chr5 17275364 17275364 1 + T C rs73756114 17275373 + 17275353 17275393 41 AAGGGCTACAATGTGAACGACGAGAAAGCCAAGGAGAAAGA AAGGGCTACAACGTGAACGACGAGAAAGCCAAGGAGAAAGA < 41bp 1 0.768019088315424 1 0.482091397047043 experiment 0.463961823369153 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275373 chr5:17275364 synonymous SNV . 0 12 hm5C_associated_SNPs_5091 0 0 1 0 1 BASP1 chr5:17275317 3'AG 17275317 Downstream 48bp
chr5 17275364 17275364 1 + T C rs73756114 17275381 + 17275361 17275401 41 CAATGTGAACGACGAGAAAGCCAAGGAGAAAGACAAGAAGG CAACGTGAACGACGAGAAAGCCAAGGAGAAAGACAAGAAGG < 41bp 1 0.391878789732413 1 0.413183331489563 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275381 chr5:17275364 synonymous SNV . 0 4 hm5C_associated_SNPs_5092 0 0 1 0 1 BASP1 chr5:17275317 3'AG 17275317 Downstream 48bp
chr5 33441150 33441150 1 + A G rs75248757 33441138 + 33441118 33441158 41 ACCTCCCACCCGCCTCTTGGCTCCTCTCCTCTAGGCCGTCG ACCTCCCACCCGCCTCTTGGCTCCTCTCCTCTGGGCCGTCG < 41bp 1 0.535635659048761 1 0.112990647554398 experiment 0.928728681902478 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TARS ENSG00000113407 splicing Human protein_coding chr5:33441138 chr5:33441150 . . 0 33 hm5C_associated_SNPs_5101 0 0 1 0 1 TARS chr5:33441249 5'GT 33441249 Upstream 100bp
chr5 33441150 33441150 1 + A G rs75248757 33441143 + 33441123 33441163 41 CCACCCGCCTCTTGGCTCCTCTCCTCTAGGCCGTCGCTTTC CCACCCGCCTCTTGGCTCCTCTCCTCTGGGCCGTCGCTTTC < 41bp 1 0.545072483800683 1 0.153971761465073 experiment 0.909855032398634 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TARS ENSG00000113407 splicing Human protein_coding chr5:33441143 chr5:33441150 . . 0 28 hm5C_associated_SNPs_5102 0 0 1 0 1 TARS chr5:33441249 5'GT 33441249 Upstream 100bp
chr5 33441150 33441150 1 + A G rs75248757 33441154 + 33441134 33441174 41 TTGGCTCCTCTCCTCTAGGCCGTCGCTTTCGGGTTCTCTCA TTGGCTCCTCTCCTCTGGGCCGTCGCTTTCGGGTTCTCTCA < 41bp 1 0.285347245346519 1 0.0812703669071198 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TARS ENSG00000113407 splicing Human protein_coding chr5:33441154 chr5:33441150 . . 0 17 hm5C_associated_SNPs_5103 0 0 1 0 1 TARS chr5:33441249 5'GT 33441249 Upstream 100bp
chr5 33441155 33441155 1 + G A rs115792337 33441138 + 33441118 33441158 41 ACCTCCCACCCGCCTCTTGGCTCCTCTCCTCTAGGCCGTCG ACCTCCCACCCGCCTCTTGGCTCCTCTCCTCTAGGCCATCG < 41bp 1 0.524161721122367 1 0.0725327730178833 experiment 0.951676557755266 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TARS ENSG00000113407 UTR5 Human protein_coding chr5:33441138 chr5:33441155 . . 0 38 hm5C_associated_SNPs_5104 0 0 1 0 2 TARS chr5:33441152 3'AG 33441152 Downstream 4bp
chr5 33441155 33441155 1 + G A rs115792337 33441138 + 33441118 33441158 41 ACCTCCCACCCGCCTCTTGGCTCCTCTCCTCTAGGCCGTCG ACCTCCCACCCGCCTCTTGGCTCCTCTCCTCTAGGCCATCG < 41bp 1 0.524161721122367 1 0.0725327730178833 experiment 0.951676557755266 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TARS ENSG00000113407 UTR5 Human protein_coding chr5:33441138 chr5:33441155 . . 0 38 hm5C_associated_SNPs_5104 0 0 1 0 2 TARS chr5:33441249 5'GT 33441249 Upstream 95bp
chr5 33441155 33441155 1 + G A rs115792337 33441143 + 33441123 33441163 41 CCACCCGCCTCTTGGCTCCTCTCCTCTAGGCCGTCGCTTTC CCACCCGCCTCTTGGCTCCTCTCCTCTAGGCCATCGCTTTC < 41bp 1 0.522753063364086 1 0.196986019611359 experiment 0.954493873271828 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TARS ENSG00000113407 UTR5 Human protein_coding chr5:33441143 chr5:33441155 . . 0 33 hm5C_associated_SNPs_5105 0 0 1 0 2 TARS chr5:33441152 3'AG 33441152 Downstream 4bp
chr5 33441155 33441155 1 + G A rs115792337 33441143 + 33441123 33441163 41 CCACCCGCCTCTTGGCTCCTCTCCTCTAGGCCGTCGCTTTC CCACCCGCCTCTTGGCTCCTCTCCTCTAGGCCATCGCTTTC < 41bp 1 0.522753063364086 1 0.196986019611359 experiment 0.954493873271828 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TARS ENSG00000113407 UTR5 Human protein_coding chr5:33441143 chr5:33441155 . . 0 33 hm5C_associated_SNPs_5105 0 0 1 0 2 TARS chr5:33441249 5'GT 33441249 Upstream 95bp
chr5 33441155 33441155 1 + G A rs115792337 33441154 + 33441134 33441174 41 TTGGCTCCTCTCCTCTAGGCCGTCGCTTTCGGGTTCTCTCA TTGGCTCCTCTCCTCTAGGCCATCGCTTTCGGGTTCTCTCA < 41bp 1 0.268921790886614 1 0.0393438041210175 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TARS ENSG00000113407 UTR5 Human protein_coding chr5:33441154 chr5:33441155 . . 0 22 hm5C_associated_SNPs_5106 0 0 1 0 2 TARS chr5:33441152 3'AG 33441152 Downstream 4bp
chr5 33441155 33441155 1 + G A rs115792337 33441154 + 33441134 33441174 41 TTGGCTCCTCTCCTCTAGGCCGTCGCTTTCGGGTTCTCTCA TTGGCTCCTCTCCTCTAGGCCATCGCTTTCGGGTTCTCTCA < 41bp 1 0.268921790886614 1 0.0393438041210175 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TARS ENSG00000113407 UTR5 Human protein_coding chr5:33441154 chr5:33441155 . . 0 22 hm5C_associated_SNPs_5106 0 0 1 0 2 TARS chr5:33441249 5'GT 33441249 Upstream 95bp
chr5 33461355 33461355 1 + G A rs2270905 33461353 + 33461333 33461373 41 AACTAAACCTTTCTACTCGCCCGGAAAAATTCCTTGGAGAT AACTAAACCTTTCTACTCGCCCAGAAAAATTCCTTGGAGAT < 41bp 1 0.306937242792471 1 0.11626124382019 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33461353 chr5:33461355 synonymous SNV . 0 23 hm5C_associated_SNPs_5107 0 0 1 0 2 TARS chr5:33461263 3'AG 33461263 Downstream 93bp
chr5 33461355 33461355 1 + G A rs2270905 33461353 + 33461333 33461373 41 AACTAAACCTTTCTACTCGCCCGGAAAAATTCCTTGGAGAT AACTAAACCTTTCTACTCGCCCAGAAAAATTCCTTGGAGAT < 41bp 1 0.306937242792471 1 0.11626124382019 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33461353 chr5:33461355 synonymous SNV . 0 23 hm5C_associated_SNPs_5107 0 0 1 0 2 TARS chr5:33461400 5'GT 33461400 Upstream 46bp
chr5 34949744 34949744 1 + G A rs112971776 34949743 + 34949723 34949763 41 GAGAGAAGAGATGGAGAGAGCGAGCACAAATGTGCCAAAAT GAGAGAAGAGATGGAGAGAGCAAGCACAAATGTGCCAAAAT < 41bp 1 0.424917157459352 1 0.719855546951294 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34949743 chr5:34949744 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_5114 0 0 0 0 2 DNAJC21 chr5:34949648 3'AG 34949648 Downstream 97bp
chr5 34949744 34949744 1 + G A rs112971776 34949743 + 34949723 34949763 41 GAGAGAAGAGATGGAGAGAGCGAGCACAAATGTGCCAAAAT GAGAGAAGAGATGGAGAGAGCAAGCACAAATGTGCCAAAAT < 41bp 1 0.424917157459352 1 0.719855546951294 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34949743 chr5:34949744 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_5114 0 0 0 0 2 DNAJC21 chr5:34949782 5'GT 34949782 Upstream 39bp
chr5 38846172 38846172 1 + C G rs565811520 38846188 + 38846168 38846208 41 CACCCGCGCCCCACGCGCCGCCGAGGACTCGGCCCGGCTCG CACCGGCGCCCCACGCGCCGCCGAGGACTCGGCCCGGCTCG < 41bp 1 0.597488568247866 1 0.746447443962097 experiment 0.805022863504269 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OSMR ENSG00000145623 UTR5 Human protein_coding chr5:38846188 chr5:38846172 . . 0 5 hm5C_associated_SNPs_5120 0 0 1 0 1 OSMR chr5:38846228 5'GT 38846228 Upstream 57bp
chr5 38846184 38846184 1 + G A rs533781365 38846188 + 38846168 38846208 41 CACCCGCGCCCCACGCGCCGCCGAGGACTCGGCCCGGCTCG CACCCGCGCCCCACGCACCGCCGAGGACTCGGCCCGGCTCG < 41bp 1 0.613587412320037 1 0.8264040350914 experiment 0.772825175359926 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OSMR ENSG00000145623 UTR5 Human protein_coding chr5:38846188 chr5:38846184 . . 0 17 hm5C_associated_SNPs_5121 0 0 1 0 1 OSMR chr5:38846228 5'GT 38846228 Upstream 45bp
chr5 43613046 43613046 1 + A G rs35201656 43613043 + 43613023 43613063 41 GCAACTGACTGTTGGAGTCCCCAAAGAGATATTCCAAAATG GCAACTGACTGTTGGAGTCCCCAGAGAGATATTCCAAAATG < 41bp 1 0.627108854649074 1 0.419277369976044 experiment 0.745782290701853 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43613043 chr5:43613046 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_5130 0 0 1 0 1 NNT chr5:43613010 3'AG 43613010 Downstream 37bp
chr5 54456071 54456071 1 + G A rs148475851 54456062 + 54456042 54456082 41 CCGCTAAAATGTTCCGGGCCCAGAGCAAAGGTATTTGCAGT CCGCTAAAATGTTCCGGGCCCAGAGCAAAAGTATTTGCAGT < 41bp 1 0.492823007664149 1 0.472694456577301 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPX8 ENSG00000164294 CDS Human protein_coding chr5:54456062 chr5:54456071 synonymous SNV . 0 30 hm5C_associated_SNPs_5135 0 0 1 0 1 GPX8 chr5:54456071 5'GT 54456071 Upstream 1bp
chr5 54720591 54720591 1 + C T rs200078537 54720581 + 54720561 54720601 41 CAAGAGAGATATTGTGTTTGCTGCCAGCCTCTACTTGTAGA CAAGAGAGATATTGTGTTTGCTGCCAGCCTTTACTTGTAGA < 41bp 1 0.239785818124181 1 0.107453435659409 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54720581 chr5:54720591 synonymous SNV . 0 31 hm5C_associated_SNPs_5136 0 0 1 0 1 SKIV2L2 chr5:54720548 3'AG 54720548 Downstream 44bp
chr5 56526778 56526778 1 + A G rs62000370 56526784 + 56526764 56526804 41 GCTTTGATTCTGCTATTGGGCGTCCTAATGGAGGTAAAATT GCTTTGATTCTGCTGTTGGGCGTCCTAATGGAGGTAAAATT < 41bp 1 0.203831800443074 1 0.195968627929688 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56526784 chr5:56526778 nonsynonymous SNV 1.000 0 15 hm5C_associated_SNPs_5141 0 0 1 1 1 GPBP1 chr5:56526796 5'GT 56526796 Upstream 19bp
chr5 56526783 56526783 1 + G A rs1130203 56526784 + 56526764 56526804 41 GCTTTGATTCTGCTATTGGGCGTCCTAATGGAGGTAAAATT GCTTTGATTCTGCTATTGGACGTCCTAATGGAGGTAAAATT < 41bp 1 0.221810074324999 1 0.0756416320800781 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56526784 chr5:56526783 synonymous SNV . 0 20 hm5C_associated_SNPs_5142 0 0 1 1 1 GPBP1 chr5:56526796 5'GT 56526796 Upstream 14bp
chr5 64267561 64267561 1 + C G rs58322956 64267545 + 64267525 64267565 41 TTTAGAGGAAGAAGCCCCTCCAGATGGTGCTGTTGCCGAAT TTTAGAGGAAGAAGCCCCTCCAGATGGTGCTGTTGCGGAAT < 41bp 1 0.243534114746419 1 0.675778567790985 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64267545 chr5:64267561 synonymous SNV . 0 37 hm5C_associated_SNPs_5143 0 0 1 0 2 CWC27 chr5:64267530 3'AG 64267530 Downstream 32bp
chr5 64267561 64267561 1 + C G rs58322956 64267545 + 64267525 64267565 41 TTTAGAGGAAGAAGCCCCTCCAGATGGTGCTGTTGCCGAAT TTTAGAGGAAGAAGCCCCTCCAGATGGTGCTGTTGCGGAAT < 41bp 1 0.243534114746419 1 0.675778567790985 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64267545 chr5:64267561 synonymous SNV . 0 37 hm5C_associated_SNPs_5143 0 0 1 0 2 CWC27 chr5:64267639 5'GT 64267639 Upstream 79bp
chr5 65118664 65118664 1 + T C rs149642804 65118652 + 65118632 65118672 41 AATCCTGAAACCTGGGGGATCTCTGGACGGCATGGACATGC AATCCTGAAACCTGGGGGATCTCTGGACGGCACGGACATGC < 41bp 1 0.381197430619156 1 0.344294816255569 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NLN ENSG00000123213 CDS Human protein_coding chr5:65118652 chr5:65118664 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_5145 0 0 1 0 1 NLN chr5:65118609 3'AG 65118609 Downstream 56bp
chr5 70895499 70895499 1 + G C rs119103219 70895490 + 70895470 70895510 41 CCTTTCTTCGCTTTAGGTCTCCATTTCTGGAATTATCCCAG CCTTTCTTCGCTTTAGGTCTCCATTTCTGCAATTATCCCAG < 41bp 1 0.0510431813746386 1 0.135745525360107 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCCC2 ENSG00000131844 CDS Human protein_coding chr5:70895490 chr5:70895499 nonsynonymous SNV 0.998 4 30 hm5C_associated_SNPs_5161 2 0 1 0 1 MCCC2 chr5:70895486 3'AG 70895486 Downstream 14bp
chr5 72185751 72185751 1 + A G rs191625222 72185767 + 72185747 72185787 41 CATTAGCAGATTCAGTAGGACATCATTTAAACAAACCAGTA CATTGGCAGATTCAGTAGGACATCATTTAAACAAACCAGTA < 41bp 1 0.347950607136529 1 0.0755118429660797 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72185767 chr5:72185751 synonymous SNV . 0 5 hm5C_associated_SNPs_5165 0 0 1 0 1 TNPO1 chr5:72185784 5'GT 72185784 Upstream 34bp
chr5 72185751 72185751 1 + A G rs191625222 72185770 + 72185750 72185790 41 TAGCAGATTCAGTAGGACATCATTTAAACAAACCAGTAAGT TGGCAGATTCAGTAGGACATCATTTAAACAAACCAGTAAGT < 41bp 1 0.0786017408224868 1 0.0588712990283966 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72185770 chr5:72185751 synonymous SNV . 0 2 hm5C_associated_SNPs_5166 0 0 1 0 1 TNPO1 chr5:72185784 5'GT 72185784 Upstream 34bp
chr5 72798845 72798845 1 + A G rs14010 72798844 + 72798824 72798864 41 CATTACAGGCCATGCTGAGACAAAGCAGCTGACAGAAATGC CATTACAGGCCATGCTGAGACGAAGCAGCTGACAGAAATGC < 41bp 1 0.657944943447637 1 0.480662435293198 experiment 0.684110113104726 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTF3 ENSG00000145741 CDS Human protein_coding chr5:72798844 chr5:72798845 synonymous SNV . 0 22 hm5C_associated_SNPs_5168 0 0 1 0 1 BTF3 chr5:72798942 5'GT 72798942 Upstream 98bp
chr5 72801092 72801092 1 + G A rs545142219 72801109 + 72801089 72801129 41 CCTGAAGAAGTTACTGGGAGCTGCTATTTTATATTATGACT CCTAAAGAAGTTACTGGGAGCTGCTATTTTATATTATGACT < 41bp 1 0.298476996551596 1 0.283280283212662 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BTF3 ENSG00000145741 UTR3 Human protein_coding chr5:72801109 chr5:72801092 . . 0 4 hm5C_associated_SNPs_5169 0 0 1 4 1 BTF3 chr5:72801017 3'AG 72801017 Downstream 76bp
chr5 73981361 73981361 1 + C A rs140509633 73981351 + 73981331 73981371 41 CCCCAATTCCACGGCGGGCCCCTCCTGCACCCTGCTGGAGG CCCCAATTCCACGGCGGGCCCCTCCTGCACACTGCTGGAGG < 41bp 1 0.0712033946713192 1 0.0759294033050537 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HEXB ENSG00000049860 CDS Human protein_coding chr5:73981351 chr5:73981361 synonymous SNV . 0 31 hm5C_associated_SNPs_5170 0 0 1 0 1 HEXB chr5:73981384 5'GT 73981384 Upstream 24bp
chr5 78908580 78908580 1 + C T rs147237003 78908591 + 78908571 78908611 41 TAGCCCTTCCCGGAGGACACCTGTGAGTTTAGGGGGTTTCG TAGCCCTTCTCGGAGGACACCTGTGAGTTTAGGGGGTTTCG < 41bp 1 0.431102548746995 1 0.165830165147781 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPD4 ENSG00000164329 UTR5 Human protein_coding chr5:78908591 chr5:78908580 . . 0 10 hm5C_associated_SNPs_5176 0 0 1 0 1 PAPD4 chr5:78908592 5'GT 78908592 Upstream 13bp
chr5 81272119 81272119 1 + C G rs187387761 81272103 + 81272083 81272123 41 CTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCC CTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGGGCCC < 41bp 1 0.771427459684703 1 0.720376014709473 experiment 0.457145080630594 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATG10 ENSG00000152348 UTR5 Human protein_coding chr5:81272103 chr5:81272119 . . 0 37 hm5C_associated_SNPs_5177 0 0 0 0 1 ATG10 chr5:81272146 5'GT 81272146 Upstream 28bp
chr5 81272119 81272119 1 + C G rs187387761 81272107 + 81272087 81272127 41 CAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCC CAAAGTGCTGGGATTACAGGCGTGAGCCACTGGGCCCGGCC < 41bp 1 0.559041478107622 1 0.616923570632935 experiment 0.881917043784756 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATG10 ENSG00000152348 UTR5 Human protein_coding chr5:81272107 chr5:81272119 . . 0 33 hm5C_associated_SNPs_5178 0 0 0 0 1 ATG10 chr5:81272146 5'GT 81272146 Upstream 28bp
chr5 81272119 81272119 1 + C G rs187387761 81272113 + 81272093 81272133 41 GCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCCTGTTGT GCTGGGATTACAGGCGTGAGCCACTGGGCCCGGCCTGTTGT < 41bp 1 0.441522584832523 1 0.133531272411346 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATG10 ENSG00000152348 UTR5 Human protein_coding chr5:81272113 chr5:81272119 . . 0 27 hm5C_associated_SNPs_5179 0 0 0 0 1 ATG10 chr5:81272146 5'GT 81272146 Upstream 28bp
chr5 81272119 81272119 1 + C G rs187387761 81272114 + 81272094 81272134 41 CTGGGATTACAGGCGTGAGCCACTGCGCCCGGCCTGTTGTA CTGGGATTACAGGCGTGAGCCACTGGGCCCGGCCTGTTGTA < 41bp 1 0.426685591428356 1 0.795308411121368 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATG10 ENSG00000152348 UTR5 Human protein_coding chr5:81272114 chr5:81272119 . . 0 26 hm5C_associated_SNPs_5180 0 0 0 0 1 ATG10 chr5:81272146 5'GT 81272146 Upstream 28bp
chr5 85915288 85915288 1 + G A rs142386563 85915269 + 85915249 85915289 41 CCTTCCTTGTAGTAAGACACCAACTGCTTAAAACATAAGGA CCTTCCTTGTAGTAAGACACCAACTGCTTAAAACATAAGAA < 41bp 1 0.402954413544251 1 0.375348269939423 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COX7C ENSG00000127184 UTR3 Human protein_coding chr5:85915269 chr5:85915288 . . 0 40 hm5C_associated_SNPs_5193 0 0 1 2 1 COX7C chr5:85915313 5'GT 85915313 Upstream 26bp
chr5 95067362 95067362 1 + C T rs138352241 95067344 + 95067324 95067364 41 CCCCGCGAAGCCGTGAGCCGCTGCTTTTCTCCGAGTCGCCG CCCCGCGAAGCCGTGAGCCGCTGCTTTTCTCCGAGTCGTCG < 41bp 1 0.539645957261378 1 0.0522703230381012 experiment 0.920708085477244 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RHOBTB3 ENSG00000250240 ncRNA_intronic Human protein_coding chr5:95067344 chr5:95067362 . . 0 39 hm5C_associated_SNPs_5200 0 0 1 0 1 RHOBTB3 chr5:95067388 5'GT 95067388 Upstream 27bp
chr5 96063212 96063212 1 + A G rs113125742 96063227 + 96063207 96063247 41 ACCTGAGAAGAAGTCACAGTCAACCAAGGTAAATAGTTTAA ACCTGGGAAGAAGTCACAGTCAACCAAGGTAAATAGTTTAA < 41bp 1 0.304946605782635 1 0.262213110923767 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAST ENSG00000153113 CDS Human protein_coding chr5:96063227 chr5:96063212 nonsynonymous SNV 0.992 4 6 hm5C_associated_SNPs_5207 0 0 1 0 2 CAST chr5:96063193 3'AG 96063193 Downstream 20bp
chr5 96063212 96063212 1 + A G rs113125742 96063227 + 96063207 96063247 41 ACCTGAGAAGAAGTCACAGTCAACCAAGGTAAATAGTTTAA ACCTGGGAAGAAGTCACAGTCAACCAAGGTAAATAGTTTAA < 41bp 1 0.304946605782635 1 0.262213110923767 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAST ENSG00000153113 CDS Human protein_coding chr5:96063227 chr5:96063212 nonsynonymous SNV 0.992 4 6 hm5C_associated_SNPs_5207 0 0 1 0 2 CAST chr5:96063234 5'GT 96063234 Upstream 23bp
chr5 102345546 102345546 1 + A C rs2230457 102345555 + 102345535 102345575 41 GGGGAAATTATAGACATCTTCAAGCCAGTGCGCAAGGTATT GGGGAAATTATCGACATCTTCAAGCCAGTGCGCAAGGTATT < 41bp 1 0.280808092174734 1 0.415910065174103 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PAM ENSG00000145730 CDS Human protein_coding chr5:102345555 chr5:102345546 synonymous SNV . 0 12 hm5C_associated_SNPs_5213 0 0 0 0 2 PAM chr5:102345455 3'AG 102345455 Downstream 92bp
chr5 102345546 102345546 1 + A C rs2230457 102345555 + 102345535 102345575 41 GGGGAAATTATAGACATCTTCAAGCCAGTGCGCAAGGTATT GGGGAAATTATCGACATCTTCAAGCCAGTGCGCAAGGTATT < 41bp 1 0.280808092174734 1 0.415910065174103 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PAM ENSG00000145730 CDS Human protein_coding chr5:102345555 chr5:102345546 synonymous SNV . 0 12 hm5C_associated_SNPs_5213 0 0 0 0 2 PAM chr5:102345570 5'GT 102345570 Upstream 25bp
chr5 102472497 102472497 1 + C T rs114517746 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATCAATGATTTGAATATGCAGTATCTCATACAAGATAGG < 41bp 1 0.380241225564404 1 0.170014649629593 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472497 synonymous SNV . 0 11 hm5C_associated_SNPs_5214 0 0 1 4 2 PPIP5K2 chr5:102472436 3'AG 102472436 Downstream 62bp
chr5 102472497 102472497 1 + C T rs114517746 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATCAATGATTTGAATATGCAGTATCTCATACAAGATAGG < 41bp 1 0.380241225564404 1 0.170014649629593 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472497 synonymous SNV . 0 11 hm5C_associated_SNPs_5214 0 0 1 4 2 PPIP5K2 chr5:102472526 5'GT 102472526 Upstream 30bp
chr5 112164557 112164557 1 + T C rs144056494 112164560 + 112164540 112164580 41 GATTAATTTGCAGGTTATTGCGAGTGTTTTGAGGAATTTGT GATTAATTTGCAGGTTACTGCGAGTGTTTTGAGGAATTTGT < 41bp 1 0.117394149730026 1 0.382902562618256 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APC ENSG00000134982;ENSG00000258864 CDS Human other chr5:112164560 chr5:112164557 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_5222 4 0 1 0 1 APC chr5:112164553 3'AG 112164553 Downstream 5bp
chr5 112164561 112164561 1 + G A rs351771 112164560 + 112164540 112164580 41 GATTAATTTGCAGGTTATTGCGAGTGTTTTGAGGAATTTGT GATTAATTTGCAGGTTATTGCAAGTGTTTTGAGGAATTTGT < 41bp 1 0.141185035120322 1 0.311737298965454 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APC ENSG00000134982;ENSG00000258864 CDS Human other chr5:112164560 chr5:112164561 synonymous SNV . 0 22 hm5C_associated_SNPs_5223 5 0 1 0 1 APC chr5:112164553 3'AG 112164553 Downstream 9bp
chr5 112197046 112197046 1 + C T rs73220042 112197065 + 112197045 112197085 41 GCTCCTGGGTTGTTGAGACTCTTGTGAAGATGGCTTGCGCT GTTCCTGGGTTGTTGAGACTCTTGTGAAGATGGCTTGCGCT < 41bp 1 0.615989220733252 1 0.210376560688019 experiment 0.768021558533497 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRP19 ENSG00000153037;ENSG00000272869 UTR5 Human other chr5:112197065 chr5:112197046 . . 0 2 hm5C_associated_SNPs_5224 0 0 1 0 1 SRP19 chr5:112197114 5'GT 112197114 Upstream 69bp
chr5 112197048 112197048 1 + C G rs141113736 112197065 + 112197045 112197085 41 GCTCCTGGGTTGTTGAGACTCTTGTGAAGATGGCTTGCGCT GCTGCTGGGTTGTTGAGACTCTTGTGAAGATGGCTTGCGCT < 41bp 1 0.639414481977335 1 0.195974886417389 experiment 0.721171036045331 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRP19 ENSG00000153037;ENSG00000272869 UTR5 Human other chr5:112197065 chr5:112197048 . . 0 4 hm5C_associated_SNPs_5225 0 0 1 0 1 SRP19 chr5:112197114 5'GT 112197114 Upstream 67bp
chr5 112868684 112868684 1 + G A rs115673426 112868670 + 112868650 112868690 41 ATTGGCAGCTATCGCTGTGGCTGAAAGAGTTGCCGCAGAGA ATTGGCAGCTATCGCTGTGGCTGAAAGAGTTGCCACAGAGA < 41bp 1 0.785192637321242 1 0.607589066028595 experiment 0.429614725357517 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868670 chr5:112868684 nonsynonymous SNV 0.998 1 35 hm5C_associated_SNPs_5229 0 0 1 0 1 YTHDC2 chr5:112868742 5'GT 112868742 Upstream 59bp
chr5 112868684 112868684 1 + G A rs115673426 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA CGCTGTGGCTGAAAGAGTTGCCACAGAGAGACGGGAAAGGA < 41bp 1 0.39878742590187 1 0.0776061415672302 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868684 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_5230 0 0 1 0 1 YTHDC2 chr5:112868742 5'GT 112868742 Upstream 59bp
chr5 112868684 112868684 1 + G A rs115673426 112868683 + 112868663 112868703 41 GCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT GCTGTGGCTGAAAGAGTTGCCACAGAGAGACGGGAAAGGAT < 41bp 1 0.584437506971849 1 0.70954293012619 experiment 0.831124986056302 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868683 chr5:112868684 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_5231 0 0 1 0 1 YTHDC2 chr5:112868742 5'GT 112868742 Upstream 59bp
chr5 112868693 112868693 1 + C A rs6594732 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGAAGGGAAAGGA < 41bp 1 0.544443234611359 1 0.119975000619888 experiment 0.911113530777282 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868693 synonymous SNV . 0 32 hm5C_associated_SNPs_5232 0 0 1 0 1 YTHDC2 chr5:112868742 5'GT 112868742 Upstream 50bp
chr5 112868693 112868693 1 + C A rs6594732 112868683 + 112868663 112868703 41 GCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT GCTGTGGCTGAAAGAGTTGCCGCAGAGAGAAGGGAAAGGAT < 41bp 1 0.6336793617344 1 0.783193707466125 experiment 0.7326412765312 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868683 chr5:112868693 synonymous SNV . 0 31 hm5C_associated_SNPs_5233 0 0 1 0 1 YTHDC2 chr5:112868742 5'GT 112868742 Upstream 50bp
chr5 112868694 112868694 1 + G A rs145755313 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACAGGAAAGGA < 41bp 1 0.530866056180708 1 0.109735250473022 experiment 0.938267887638584 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868694 nonsynonymous SNV 0.998 1 33 hm5C_associated_SNPs_5234 0 0 1 0 1 YTHDC2 chr5:112868742 5'GT 112868742 Upstream 49bp
chr5 112868694 112868694 1 + G A rs145755313 112868683 + 112868663 112868703 41 GCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT GCTGTGGCTGAAAGAGTTGCCGCAGAGAGACAGGAAAGGAT < 41bp 1 0.626749933854346 1 0.738412976264954 experiment 0.746500132291309 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868683 chr5:112868694 nonsynonymous SNV 0.998 1 32 hm5C_associated_SNPs_5235 0 0 1 0 1 YTHDC2 chr5:112868742 5'GT 112868742 Upstream 49bp
chr5 118877677 118877677 1 + C T rs12714 118877694 + 118877674 118877714 41 CTACGCCAAGCTCTGAAGGGCACACTACACTATTAATAAAA CTATGCCAAGCTCTGAAGGGCACACTACACTATTAATAAAA < 41bp 1 0.157555485526115 1 0.0969866216182709 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118877694 chr5:118877677 synonymous SNV . 0 4 hm5C_associated_SNPs_5238 3 0 1 0 1 HSD17B4 chr5:118877600 3'AG 118877600 Downstream 78bp
chr5 118877695 118877695 1 + A G rs111671384 118877694 + 118877674 118877714 41 CTACGCCAAGCTCTGAAGGGCACACTACACTATTAATAAAA CTACGCCAAGCTCTGAAGGGCGCACTACACTATTAATAAAA < 41bp 1 0.195290963577783 1 0.102002441883087 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSD17B4 ENSG00000133835 UTR3 Human protein_coding chr5:118877694 chr5:118877695 . . 0 22 hm5C_associated_SNPs_5239 3 0 1 3 1 HSD17B4 chr5:118877600 3'AG 118877600 Downstream 96bp
chr5 122426284 122426284 1 + C G rs551675521 122426277 + 122426257 122426297 41 TGGAGATCATCCCGCTCAACCAGCACACCAGCGACCCCAAC TGGAGATCATCCCGCTCAACCAGCACAGCAGCGACCCCAAC < 41bp 1 0.784718495756315 1 0.830026865005493 experiment 0.430563008487369 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRDM6 ENSG00000061455 CDS Human protein_coding chr5:122426277 chr5:122426284 nonsynonymous SNV 1.000 0 28 hm5C_associated_SNPs_5240 0 0 0 1 1 PRDM6 chr5:122426301 5'GT 122426301 Upstream 18bp
chr5 131667460 131667460 1 + C A rs200185233 131667467 + 131667447 131667487 41 AGGAGCTAAATCCCCTGAAGCAGCAGAAAGCTTTCATTCTG AGGAGCTAAATCCACTGAAGCAGCAGAAAGCTTTCATTCTG < 41bp 1 0.634810499825537 1 0.723484396934509 experiment 0.730379000348926 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131667467 chr5:131667460 synonymous SNV . 0 14 hm5C_associated_SNPs_5246 0 0 0 0 2 SLC22A4 chr5:131667449 3'AG 131667449 Downstream 12bp
chr5 131667460 131667460 1 + C A rs200185233 131667467 + 131667447 131667487 41 AGGAGCTAAATCCCCTGAAGCAGCAGAAAGCTTTCATTCTG AGGAGCTAAATCCACTGAAGCAGCAGAAAGCTTTCATTCTG < 41bp 1 0.634810499825537 1 0.723484396934509 experiment 0.730379000348926 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131667467 chr5:131667460 synonymous SNV . 0 14 hm5C_associated_SNPs_5246 0 0 0 0 2 SLC22A4 chr5:131667543 5'GT 131667543 Upstream 84bp
chr5 131940521 131940521 1 + C A rs181961360 131940539 + 131940519 131940559 41 ATCGTAAGCTTATACAGGACCAGCAGGAACAGATTCAACAT ATAGTAAGCTTATACAGGACCAGCAGGAACAGATTCAACAT < 41bp 1 0.671288005243013 1 0.22568616271019 experiment 0.657423989513974 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131940539 chr5:131940521 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_5249 1 0 1 0 1 RAD50 chr5:131940498 3'AG 131940498 Downstream 24bp
chr5 131977963 131977963 1 + T C rs1804670 131977975 + 131977955 131977995 41 TCTGAATATGTGGAGAAATTCTACAGGATTAAAAAGAACAT TCTGAATACGTGGAGAAATTCTACAGGATTAAAAAGAACAT < 41bp 1 0.727012584447525 1 0.635460078716278 experiment 0.545974831104951 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131977975 chr5:131977963 synonymous SNV . 0 9 hm5C_associated_SNPs_5250 2 0 1 0 1 RAD50 chr5:131977870 3'AG 131977870 Downstream 94bp
chr5 135369458 135369458 1 + C T rs368854767 135369452 + 135369432 135369472 41 TCTGCTGCTTTTGTTTTCAGCCCCAACGTGTGTGCTGTGCA TCTGCTGCTTTTGTTTTCAGCCCCAATGTGTGTGCTGTGCA < 41bp 1 0.214974162803004 1 0.271773844957352 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFBI ENSG00000120708 CDS Human protein_coding chr5:135369452 chr5:135369458 synonymous SNV . 0 27 hm5C_associated_SNPs_5276 1 0 1 0 2 TGFBI chr5:135369452 3'AG 135369452 Downstream 7bp
chr5 135369458 135369458 1 + C T rs368854767 135369452 + 135369432 135369472 41 TCTGCTGCTTTTGTTTTCAGCCCCAACGTGTGTGCTGTGCA TCTGCTGCTTTTGTTTTCAGCCCCAATGTGTGTGCTGTGCA < 41bp 1 0.214974162803004 1 0.271773844957352 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFBI ENSG00000120708 CDS Human protein_coding chr5:135369452 chr5:135369458 synonymous SNV . 0 27 hm5C_associated_SNPs_5276 1 0 1 0 2 TGFBI chr5:135369550 5'GT 135369550 Upstream 93bp
chr5 135369458 135369458 1 + C T rs368854767 135369453 + 135369433 135369473 41 CTGCTGCTTTTGTTTTCAGCCCCAACGTGTGTGCTGTGCAG CTGCTGCTTTTGTTTTCAGCCCCAATGTGTGTGCTGTGCAG < 41bp 1 0.24764531086994 1 0.178556323051453 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFBI ENSG00000120708 CDS Human protein_coding chr5:135369453 chr5:135369458 synonymous SNV . 0 26 hm5C_associated_SNPs_5277 1 0 1 0 2 TGFBI chr5:135369452 3'AG 135369452 Downstream 7bp
chr5 135369458 135369458 1 + C T rs368854767 135369453 + 135369433 135369473 41 CTGCTGCTTTTGTTTTCAGCCCCAACGTGTGTGCTGTGCAG CTGCTGCTTTTGTTTTCAGCCCCAATGTGTGTGCTGTGCAG < 41bp 1 0.24764531086994 1 0.178556323051453 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFBI ENSG00000120708 CDS Human protein_coding chr5:135369453 chr5:135369458 synonymous SNV . 0 26 hm5C_associated_SNPs_5277 1 0 1 0 2 TGFBI chr5:135369550 5'GT 135369550 Upstream 93bp
chr5 135369458 135369458 1 + C T rs368854767 135369454 + 135369434 135369474 41 TGCTGCTTTTGTTTTCAGCCCCAACGTGTGTGCTGTGCAGA TGCTGCTTTTGTTTTCAGCCCCAATGTGTGTGCTGTGCAGA < 41bp 1 0.0377317819306982 1 0.0916386246681213 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFBI ENSG00000120708 CDS Human protein_coding chr5:135369454 chr5:135369458 synonymous SNV . 0 25 hm5C_associated_SNPs_5278 1 0 1 0 2 TGFBI chr5:135369452 3'AG 135369452 Downstream 7bp
chr5 135369458 135369458 1 + C T rs368854767 135369454 + 135369434 135369474 41 TGCTGCTTTTGTTTTCAGCCCCAACGTGTGTGCTGTGCAGA TGCTGCTTTTGTTTTCAGCCCCAATGTGTGTGCTGTGCAGA < 41bp 1 0.0377317819306982 1 0.0916386246681213 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFBI ENSG00000120708 CDS Human protein_coding chr5:135369454 chr5:135369458 synonymous SNV . 0 25 hm5C_associated_SNPs_5278 1 0 1 0 2 TGFBI chr5:135369550 5'GT 135369550 Upstream 93bp
chr5 135369458 135369458 1 + C T rs368854767 135369455 + 135369435 135369475 41 GCTGCTTTTGTTTTCAGCCCCAACGTGTGTGCTGTGCAGAA GCTGCTTTTGTTTTCAGCCCCAATGTGTGTGCTGTGCAGAA < 41bp 1 0.134768456241057 1 0.14002537727356 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFBI ENSG00000120708 CDS Human protein_coding chr5:135369455 chr5:135369458 synonymous SNV . 0 24 hm5C_associated_SNPs_5279 1 0 1 0 2 TGFBI chr5:135369452 3'AG 135369452 Downstream 7bp
chr5 135369458 135369458 1 + C T rs368854767 135369455 + 135369435 135369475 41 GCTGCTTTTGTTTTCAGCCCCAACGTGTGTGCTGTGCAGAA GCTGCTTTTGTTTTCAGCCCCAATGTGTGTGCTGTGCAGAA < 41bp 1 0.134768456241057 1 0.14002537727356 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFBI ENSG00000120708 CDS Human protein_coding chr5:135369455 chr5:135369458 synonymous SNV . 0 24 hm5C_associated_SNPs_5279 1 0 1 0 2 TGFBI chr5:135369550 5'GT 135369550 Upstream 93bp
chr5 137518907 137518907 1 + G A rs139271096 137518909 + 137518889 137518929 41 TGCCCCACTACCTGTCCCGGCAAACATTCGCTTCTCCATCT TGCCCCACTACCTGTCCCAGCAAACATTCGCTTCTCCATCT < 41bp 1 0.248044359552315 1 0.126286625862122 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF20A ENSG00000112984 CDS Human protein_coding chr5:137518909 chr5:137518907 synonymous SNV . 0 19 hm5C_associated_SNPs_5280 0 0 1 0 1 KIF20A chr5:137518858 3'AG 137518858 Downstream 50bp
chr5 138609823 138609823 1 + C T rs528872797 138609817 + 138609797 138609837 41 CCCTCCGGCCTCTGCCGGTGCTGCTGCGCCCTGCGGAGCTC CCCTCCGGCCTCTGCCGGTGCTGCTGTGCCCTGCGGAGCTC < 41bp 1 0.719388330695057 1 0.083538681268692 experiment 0.561223338609887 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNHG4 ENSG00000015479 UTR5 Human protein_coding chr5:138609817 chr5:138609823 . . 0 27 hm5C_associated_SNPs_5284 0 0 1 0 1 SNHG4 chr5:138609850 5'GT 138609850 Upstream 28bp
chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 1 SNHG4 chr5:138614185 5'GT 138614185 Upstream 62bp
chr5 139820696 139820696 1 + T C rs534783218 139820688 + 139820668 139820708 41 TAGATATTGTGAAATTATTACTTCTTCATGATGCTGATGTC TAGATATTGTGAAATTATTACTTCTTCACGATGCTGATGTC < 41bp 1 0.0971023626489117 1 0.20170670747757 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139820688 chr5:139820696 synonymous SNV . 0 29 hm5C_associated_SNPs_5291 0 0 1 0 1 ANKHD1;ANKHD1-EIF4EBP3 chr5:139820727 5'GT 139820727 Upstream 32bp
chr5 139887565 139887565 1 + T C rs114577754 139887579 + 139887559 139887599 41 AGCCAATGTTGAACATAGGGCAAAGGTAAGCATTTTTTACT AGCCAACGTTGAACATAGGGCAAAGGTAAGCATTTTTTACT < 41bp 1 0.174084728430029 1 0.175607442855835 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139887579 chr5:139887565 synonymous SNV . 0 7 hm5C_associated_SNPs_5292 0 0 1 0 1 ANKHD1;ANKHD1-EIF4EBP3 chr5:139887583 5'GT 139887583 Upstream 19bp
chr5 141353252 141353252 1 + T G rs112321759 141353260 + 141353240 141353280 41 GTCTGTCCAAGGTGGAGAAACCAGGATCTATTTGGATTTGC GTCTGTCCAAGGGGGAGAAACCAGGATCTATTTGGATTTGC < 41bp 1 0.613864797502835 1 0.21190020442009 experiment 0.772270404994331 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF14 ENSG00000013561 CDS Human protein_coding chr5:141353260 chr5:141353252 synonymous SNV . 0 13 hm5C_associated_SNPs_5333 0 0 0 0 1 RNF14 chr5:141353307 5'GT 141353307 Upstream 56bp
chr5 149406356 149406356 1 + C A rs61739331 149406376 + 149406356 149406396 41 CATGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAG AATGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAG < 41bp 1 0.51350770647061 1 0.305736035108566 experiment 0.972984587058779 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406376 chr5:149406356 synonymous SNV . 0 1 hm5C_associated_SNPs_5350 0 0 1 0 2 HMGXB3 chr5:149406269 3'AG 149406269 Downstream 88bp
chr5 149406356 149406356 1 + C A rs61739331 149406376 + 149406356 149406396 41 CATGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAG AATGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAG < 41bp 1 0.51350770647061 1 0.305736035108566 experiment 0.972984587058779 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406376 chr5:149406356 synonymous SNV . 0 1 hm5C_associated_SNPs_5350 0 0 1 0 2 HMGXB3 chr5:149406444 5'GT 149406444 Upstream 89bp
chr5 149406413 149406413 1 + G A rs147489392 149406393 + 149406373 149406413 41 CAGCCCCAGTTAACGTGGGGCGAGGCAGCAGCATGGGACTG CAGCCCCAGTTAACGTGGGGCGAGGCAGCAGCATGGGACTA < 41bp 1 0.400701853457963 1 0.533246397972107 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406393 chr5:149406413 synonymous SNV . 0 41 hm5C_associated_SNPs_5351 0 0 1 0 1 HMGXB3 chr5:149406444 5'GT 149406444 Upstream 32bp
chr5 149751756 149751756 1 + G A rs182776703 149751738 + 149751718 149751758 41 CAAGAAGCCAGAAGAGGAGTCAGAGAGTAGTGAGGAGGGAT CAAGAAGCCAGAAGAGGAGTCAGAGAGTAGTGAGGAGGAAT < 41bp 1 0.310915598003288 1 0.657943069934845 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149751738 chr5:149751756 nonsynonymous SNV 0.197 0 39 hm5C_associated_SNPs_5352 0 0 1 0 1 TCOF1 chr5:149751799 5'GT 149751799 Upstream 44bp
chr5 149751756 149751756 1 + G A rs182776703 149751759 + 149751739 149751779 41 AGAGAGTAGTGAGGAGGGATCTGAAAGTGAGGAGGAGGCCC AGAGAGTAGTGAGGAGGAATCTGAAAGTGAGGAGGAGGCCC < 41bp 1 0.757093277958963 1 0.737690448760986 experiment 0.485813444082074 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149751759 chr5:149751756 nonsynonymous SNV 0.197 0 18 hm5C_associated_SNPs_5353 0 0 1 0 1 TCOF1 chr5:149751799 5'GT 149751799 Upstream 44bp
chr5 149753894 149753894 1 + G A rs144327167 149753906 + 149753886 149753926 41 GAGCAGCAGCGAGGAGTCATCTGACAGTGAGGAGGAGACGC GAGCAGCAACGAGGAGTCATCTGACAGTGAGGAGGAGACGC < 41bp 1 0.368056608141032 1 0.315954685211182 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149753906 chr5:149753894 nonsynonymous SNV 0.048 3 9 hm5C_associated_SNPs_5354 2 0 1 0 1 TCOF1 chr5:149753949 5'GT 149753949 Upstream 56bp
chr5 149754325 149754325 1 + C T rs114326915 149754323 + 149754303 149754343 41 GCGGGGAAGCGGGAGGAGGACTCGCAGAGCAGCAGCGAGGA GCGGGGAAGCGGGAGGAGGACTTGCAGAGCAGCAGCGAGGA < 41bp 1 0.30866854516966 1 0.0967078804969788 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754323 chr5:149754325 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_5355 1 0 1 0 1 TCOF1 chr5:149754374 5'GT 149754374 Upstream 50bp
chr5 149754325 149754325 1 + C T rs114326915 149754335 + 149754315 149754355 41 GAGGAGGACTCGCAGAGCAGCAGCGAGGAATCGGACAGTGA GAGGAGGACTTGCAGAGCAGCAGCGAGGAATCGGACAGTGA < 41bp 1 0.541664533054368 1 0.219207555055618 experiment 0.916670933891264 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754335 chr5:149754325 nonsynonymous SNV 0.001 0 11 hm5C_associated_SNPs_5356 1 0 1 0 1 TCOF1 chr5:149754374 5'GT 149754374 Upstream 50bp
chr5 149755839 149755839 1 + T G rs140334121 149755829 + 149755809 149755849 41 CCAGAGACCAGCAGAGGATTCTTCAAGCAGTGAGGAATCAG CCAGAGACCAGCAGAGGATTCTTCAAGCAGGGAGGAATCAG < 41bp 1 0.392367422101162 1 0.220952570438385 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149755829 chr5:149755839 nonsynonymous SNV 0.519 3 31 hm5C_associated_SNPs_5357 0 0 1 0 1 TCOF1 chr5:149755893 5'GT 149755893 Upstream 55bp
chr5 149755839 149755839 1 + T G rs140334121 149755836 + 149755816 149755856 41 CCAGCAGAGGATTCTTCAAGCAGTGAGGAATCAGATAGTGA CCAGCAGAGGATTCTTCAAGCAGGGAGGAATCAGATAGTGA < 41bp 1 0.658952086362749 1 0.795298337936401 experiment 0.682095827274501 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149755836 chr5:149755839 nonsynonymous SNV 0.519 3 24 hm5C_associated_SNPs_5358 0 0 1 0 1 TCOF1 chr5:149755893 5'GT 149755893 Upstream 55bp
chr5 149755839 149755839 1 + T G rs140334121 149755847 + 149755827 149755867 41 TTCTTCAAGCAGTGAGGAATCAGATAGTGAGGAAGAGAAGA TTCTTCAAGCAGGGAGGAATCAGATAGTGAGGAAGAGAAGA < 41bp 1 0.393175198170289 1 0.544870376586914 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149755847 chr5:149755839 nonsynonymous SNV 0.519 3 13 hm5C_associated_SNPs_5359 0 0 1 0 1 TCOF1 chr5:149755893 5'GT 149755893 Upstream 55bp
chr5 149755845 149755845 1 + A G rs34796297 149755829 + 149755809 149755849 41 CCAGAGACCAGCAGAGGATTCTTCAAGCAGTGAGGAATCAG CCAGAGACCAGCAGAGGATTCTTCAAGCAGTGAGGAGTCAG < 41bp 1 0.382339311837297 1 0.317437469959259 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149755829 chr5:149755845 synonymous SNV . 0 37 hm5C_associated_SNPs_5360 2 0 1 0 1 TCOF1 chr5:149755893 5'GT 149755893 Upstream 49bp
chr5 149755845 149755845 1 + A G rs34796297 149755836 + 149755816 149755856 41 CCAGCAGAGGATTCTTCAAGCAGTGAGGAATCAGATAGTGA CCAGCAGAGGATTCTTCAAGCAGTGAGGAGTCAGATAGTGA < 41bp 1 0.276537384038836 1 0.242111355066299 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149755836 chr5:149755845 synonymous SNV . 0 30 hm5C_associated_SNPs_5361 2 0 1 0 1 TCOF1 chr5:149755893 5'GT 149755893 Upstream 49bp
chr5 149755845 149755845 1 + A G rs34796297 149755847 + 149755827 149755867 41 TTCTTCAAGCAGTGAGGAATCAGATAGTGAGGAAGAGAAGA TTCTTCAAGCAGTGAGGAGTCAGATAGTGAGGAAGAGAAGA < 41bp 1 0.286936168945662 1 0.444153875112534 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149755847 chr5:149755845 synonymous SNV . 0 19 hm5C_associated_SNPs_5362 2 0 1 0 1 TCOF1 chr5:149755893 5'GT 149755893 Upstream 49bp
chr5 149756091 149756091 1 + A G rs149384321 149756110 + 149756090 149756130 41 TACAGTCACCCAGGTGAAAGCTGAAAAGCAGGAAGACTCTG TGCAGTCACCCAGGTGAAAGCTGAAAAGCAGGAAGACTCTG < 41bp 1 0.646929270808856 1 0.410256296396255 experiment 0.706141458382288 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149756110 chr5:149756091 nonsynonymous SNV 0.000 0 2 hm5C_associated_SNPs_5363 0 0 1 0 1 TCOF1 chr5:149756183 5'GT 149756183 Upstream 93bp
chr5 149772280 149772280 1 + C A rs1136103 149772283 + 149772263 149772303 41 TCCAGTAGGTCCCACCCCCTCCAGGACAGAGACCCTGGTGG TCCAGTAGGTCCCACCCACTCCAGGACAGAGACCCTGGTGG < 41bp 1 0.584625800814109 1 0.846539556980133 experiment 0.830748398371782 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149772283 chr5:149772280 nonsynonymous SNV 0.009 3 18 hm5C_associated_SNPs_5364 0 0 1 0 3 TCOF1 chr5:149772268 3'AG 149772268 Downstream 13bp
chr5 149772280 149772280 1 + C A rs1136103 149772283 + 149772263 149772303 41 TCCAGTAGGTCCCACCCCCTCCAGGACAGAGACCCTGGTGG TCCAGTAGGTCCCACCCACTCCAGGACAGAGACCCTGGTGG < 41bp 1 0.584625800814109 1 0.846539556980133 experiment 0.830748398371782 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149772283 chr5:149772280 nonsynonymous SNV 0.009 3 18 hm5C_associated_SNPs_5364 0 0 1 0 3 TCOF1 chr5:149772271 3'AG 149772271 Downstream 10bp
chr5 149772280 149772280 1 + C A rs1136103 149772283 + 149772263 149772303 41 TCCAGTAGGTCCCACCCCCTCCAGGACAGAGACCCTGGTGG TCCAGTAGGTCCCACCCACTCCAGGACAGAGACCCTGGTGG < 41bp 1 0.584625800814109 1 0.846539556980133 experiment 0.830748398371782 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149772283 chr5:149772280 nonsynonymous SNV 0.009 3 18 hm5C_associated_SNPs_5364 0 0 1 0 3 TCOF1 chr5:149772353 5'GT 149772353 Upstream 74bp
chr5 149925005 149925005 1 + C G rs141935011 149925006 + 149924986 149925026 41 CCCAAAGCCAAGGTCCTGACCATCCTCATCAACCCCGCGGA CCCAAAGCCAAGGTCCTGAGCATCCTCATCAACCCCGCGGA < 41bp 1 0.130212530459463 1 0.0261042416095734 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDST1 ENSG00000070614 CDS Human protein_coding chr5:149925006 chr5:149925005 nonsynonymous SNV 0.997 1 20 hm5C_associated_SNPs_5368 0 0 1 0 1 NDST1 chr5:149925048 5'GT 149925048 Upstream 44bp
chr5 150639409 150639409 1 + A G rs153477 150639408 + 150639388 150639428 41 ACTCTGGAGCCTGACCCCATCATCGTTCCTGGAAATGTGAC ACTCTGGAGCCTGACCCCATCGTCGTTCCTGGAAATGTGAC < 41bp 1 0.573322753939397 1 0.406935214996338 experiment 0.853354492121206 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GM2A ENSG00000196743 CDS Human protein_coding chr5:150639408 chr5:150639409 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_5375 2 0 1 0 1 GM2A chr5:150639477 5'GT 150639477 Upstream 69bp
chr5 150639412 150639412 1 + G A rs201829650 150639408 + 150639388 150639428 41 ACTCTGGAGCCTGACCCCATCATCGTTCCTGGAAATGTGAC ACTCTGGAGCCTGACCCCATCATCATTCCTGGAAATGTGAC < 41bp 1 0.656903888676491 1 0.364517569541931 experiment 0.686192222647018 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GM2A ENSG00000196743 CDS Human protein_coding chr5:150639408 chr5:150639412 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_5376 0 0 1 0 1 GM2A chr5:150639477 5'GT 150639477 Upstream 66bp
chr5 153755996 153755996 1 + A G rs116636563 153756011 + 153755991 153756031 41 AGCCAATGTCAACTGGCTTCCCCCCTTGCTTGGTAAGGGAG AGCCAGTGTCAACTGGCTTCCCCCCTTGCTTGGTAAGGGAG < 41bp 1 0.0494112691153559 1 0.207721501588821 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153756011 chr5:153755996 nonsynonymous SNV 0.999 3 6 hm5C_associated_SNPs_5377 0 0 1 0 1 GALNT10 chr5:153756022 5'GT 153756022 Upstream 27bp
chr5 153783753 153783753 1 + C T rs6580076 153783741 + 153783721 153783761 41 TACAGGAAGTATGTGCCCTACAAGGTCCCGGCCGGAGTCAG TACAGGAAGTATGTGCCCTACAAGGTCCCGGCTGGAGTCAG < 41bp 1 0.635852676063672 1 0.239557802677155 experiment 0.728294647872656 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153783741 chr5:153783753 synonymous SNV . 0 33 hm5C_associated_SNPs_5378 0 0 1 0 2 GALNT10 chr5:153783664 3'AG 153783664 Downstream 90bp
chr5 153783753 153783753 1 + C T rs6580076 153783741 + 153783721 153783761 41 TACAGGAAGTATGTGCCCTACAAGGTCCCGGCCGGAGTCAG TACAGGAAGTATGTGCCCTACAAGGTCCCGGCTGGAGTCAG < 41bp 1 0.635852676063672 1 0.239557802677155 experiment 0.728294647872656 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153783741 chr5:153783753 synonymous SNV . 0 33 hm5C_associated_SNPs_5378 0 0 1 0 2 GALNT10 chr5:153783771 5'GT 153783771 Upstream 19bp
chr5 159437603 159437603 1 + C T rs540178162 159437621 + 159437601 159437641 41 TACTCAGGAAGCCGAGTGTGCTGGCCCTCCAGTTCCTGATC TATTCAGGAAGCCGAGTGTGCTGGCCCTCCAGTTCCTGATC < 41bp 1 0.77924437992516 1 0.162940710783005 experiment 0.441511240149679 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TTC1 ENSG00000113312 CDS Human protein_coding chr5:159437621 chr5:159437603 nonsynonymous SNV 0.777 0 3 hm5C_associated_SNPs_5387 0 0 1 0 1 TTC1 chr5:159437507 3'AG 159437507 Downstream 97bp
chr5 159849882 159849882 1 + A C rs185928602 159849863 + 159849843 159849883 41 GTCTGTAAAGACCAAGGGACCCCTCAAACAAAAACAGCCAA GTCTGTAAAGACCAAGGGACCCCTCAAACAAAAACAGCCCA < 41bp 1 0.131615885318835 1 0.212024092674255 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTTG1 ENSG00000164611 CDS Human protein_coding chr5:159849863 chr5:159849882 synonymous SNV . 0 40 hm5C_associated_SNPs_5388 0 0 1 0 1 PTTG1 chr5:159849900 5'GT 159849900 Upstream 19bp
chr5 162864785 162864785 1 + G A rs368697196 162864767 + 162864747 162864787 41 GTGGGGTGAGGTGAGCAGGCCCGGGGAGGGTGGTTACCGCT GTGGGGTGAGGTGAGCAGGCCCGGGGAGGGTGGTTACCACT < 41bp 1 0.767195513308948 1 0.37683117389679 experiment 0.465608973382103 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCNG1 ENSG00000113328 UTR5 Human protein_coding chr5:162864767 chr5:162864785 . . 0 39 hm5C_associated_SNPs_5390 0 0 1 0 1 CCNG1 chr5:162864810 5'GT 162864810 Upstream 26bp
chr5 167913510 167913510 1 + G A rs244903 167913509 + 167913489 167913529 41 GACGCTGATGGGAGGATGGACGTACTGGTGTCTGAGTGCTC GACGCTGATGGGAGGATGGACATACTGGTGTCTGAGTGCTC < 41bp 1 0.234544168364331 1 0.11043593287468 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RARS ENSG00000113643 CDS Human protein_coding chr5:167913509 chr5:167913510 nonsynonymous SNV 0.604 0 22 hm5C_associated_SNPs_5401 1 0 1 0 1 RARS chr5:167913548 5'GT 167913548 Upstream 39bp
chr5 167943827 167943827 1 + G A rs653568 167943826 + 167943806 167943846 41 TGCTGCTCAGACATCCGTTGCGTATGGCTGCATCAAATATG TGCTGCTCAGACATCCGTTGCATATGGCTGCATCAAATATG < 41bp 1 0.137190194722491 1 0.0282550156116486 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RARS ENSG00000113643 CDS Human protein_coding chr5:167943826 chr5:167943827 synonymous SNV . 0 22 hm5C_associated_SNPs_5402 1 0 1 0 1 RARS chr5:167943783 3'AG 167943783 Downstream 45bp
chr5 169015479 169015479 1 + G A rs116483731 169015481 + 169015461 169015501 41 AAGAGGCTGAAGAAGAGCGACTAAAAGCTGCACAGTATGGT AAGAGGCTGAAGAAGAGCAACTAAAAGCTGCACAGTATGGT < 41bp 1 0.480665460148667 1 0.395975291728973 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169015481 chr5:169015479 nonsynonymous SNV 0.175 0 19 hm5C_associated_SNPs_5403 0 0 1 0 2 SPDL1 chr5:169015398 3'AG 169015398 Downstream 82bp
chr5 169015479 169015479 1 + G A rs116483731 169015481 + 169015461 169015501 41 AAGAGGCTGAAGAAGAGCGACTAAAAGCTGCACAGTATGGT AAGAGGCTGAAGAAGAGCAACTAAAAGCTGCACAGTATGGT < 41bp 1 0.480665460148667 1 0.395975291728973 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169015481 chr5:169015479 nonsynonymous SNV 0.175 0 19 hm5C_associated_SNPs_5403 0 0 1 0 2 SPDL1 chr5:169015494 5'GT 169015494 Upstream 16bp
chr5 176522675 176522675 1 + C T rs34138361 176522657 + 176522637 176522677 41 GAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGGTCTCCT GAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGGTCTTCT < 41bp 1 0.0409313457873247 1 0.151924073696136 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522657 chr5:176522675 nonsynonymous SNV 0.985 5 39 hm5C_associated_SNPs_5486 0 0 1 0 1 FGFR4 chr5:176522724 5'GT 176522724 Upstream 50bp
chr5 177558290 177558290 1 + G A rs115379028 177558281 + 177558261 177558301 41 GGAGTCCCAGACTCATAGGTCCCGGCCCAGCCCCCGAAGAG GGAGTCCCAGACTCATAGGTCCCGGCCCAACCCCCGAAGAG < 41bp 1 0.51379835412139 1 0.481580168008804 experiment 0.972403291757219 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RMND5B ENSG00000145916 UTR5 Human protein_coding chr5:177558281 chr5:177558290 . . 0 30 hm5C_associated_SNPs_5494 0 0 1 0 2 RMND5B chr5:177558238 3'AG 177558238 Downstream 53bp
chr5 177558290 177558290 1 + G A rs115379028 177558281 + 177558261 177558301 41 GGAGTCCCAGACTCATAGGTCCCGGCCCAGCCCCCGAAGAG GGAGTCCCAGACTCATAGGTCCCGGCCCAACCCCCGAAGAG < 41bp 1 0.51379835412139 1 0.481580168008804 experiment 0.972403291757219 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RMND5B ENSG00000145916 UTR5 Human protein_coding chr5:177558281 chr5:177558290 . . 0 30 hm5C_associated_SNPs_5494 0 0 1 0 2 RMND5B chr5:177558377 5'GT 177558377 Upstream 88bp
chr5 177558290 177558290 1 + G A rs115379028 177558282 + 177558262 177558302 41 GAGTCCCAGACTCATAGGTCCCGGCCCAGCCCCCGAAGAGC GAGTCCCAGACTCATAGGTCCCGGCCCAACCCCCGAAGAGC < 41bp 1 0.219449900284774 1 0.146189004182816 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RMND5B ENSG00000145916 UTR5 Human protein_coding chr5:177558282 chr5:177558290 . . 0 29 hm5C_associated_SNPs_5495 0 0 1 0 2 RMND5B chr5:177558238 3'AG 177558238 Downstream 53bp
chr5 177558290 177558290 1 + G A rs115379028 177558282 + 177558262 177558302 41 GAGTCCCAGACTCATAGGTCCCGGCCCAGCCCCCGAAGAGC GAGTCCCAGACTCATAGGTCCCGGCCCAACCCCCGAAGAGC < 41bp 1 0.219449900284774 1 0.146189004182816 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RMND5B ENSG00000145916 UTR5 Human protein_coding chr5:177558282 chr5:177558290 . . 0 29 hm5C_associated_SNPs_5495 0 0 1 0 2 RMND5B chr5:177558377 5'GT 177558377 Upstream 88bp
chr5 177558290 177558290 1 + G A rs115379028 177558283 + 177558263 177558303 41 AGTCCCAGACTCATAGGTCCCGGCCCAGCCCCCGAAGAGCC AGTCCCAGACTCATAGGTCCCGGCCCAACCCCCGAAGAGCC < 41bp 1 0.55675344932015 1 0.490714281797409 experiment 0.8864931013597 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RMND5B ENSG00000145916 UTR5 Human protein_coding chr5:177558283 chr5:177558290 . . 0 28 hm5C_associated_SNPs_5496 0 0 1 0 2 RMND5B chr5:177558238 3'AG 177558238 Downstream 53bp
chr5 177558290 177558290 1 + G A rs115379028 177558283 + 177558263 177558303 41 AGTCCCAGACTCATAGGTCCCGGCCCAGCCCCCGAAGAGCC AGTCCCAGACTCATAGGTCCCGGCCCAACCCCCGAAGAGCC < 41bp 1 0.55675344932015 1 0.490714281797409 experiment 0.8864931013597 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RMND5B ENSG00000145916 UTR5 Human protein_coding chr5:177558283 chr5:177558290 . . 0 28 hm5C_associated_SNPs_5496 0 0 1 0 2 RMND5B chr5:177558377 5'GT 177558377 Upstream 88bp
chr5 177558290 177558290 1 + G A rs115379028 177558286 + 177558266 177558306 41 CCCAGACTCATAGGTCCCGGCCCAGCCCCCGAAGAGCCGCC CCCAGACTCATAGGTCCCGGCCCAACCCCCGAAGAGCCGCC < 41bp 1 0.255924692188286 1 0.254406720399857 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RMND5B ENSG00000145916 UTR5 Human protein_coding chr5:177558286 chr5:177558290 . . 0 25 hm5C_associated_SNPs_5497 0 0 1 0 2 RMND5B chr5:177558238 3'AG 177558238 Downstream 53bp
chr5 177558290 177558290 1 + G A rs115379028 177558286 + 177558266 177558306 41 CCCAGACTCATAGGTCCCGGCCCAGCCCCCGAAGAGCCGCC CCCAGACTCATAGGTCCCGGCCCAACCCCCGAAGAGCCGCC < 41bp 1 0.255924692188286 1 0.254406720399857 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RMND5B ENSG00000145916 UTR5 Human protein_coding chr5:177558286 chr5:177558290 . . 0 25 hm5C_associated_SNPs_5497 0 0 1 0 2 RMND5B chr5:177558377 5'GT 177558377 Upstream 88bp
chr5 177558290 177558290 1 + G A rs115379028 177558287 + 177558267 177558307 41 CCAGACTCATAGGTCCCGGCCCAGCCCCCGAAGAGCCGCCT CCAGACTCATAGGTCCCGGCCCAACCCCCGAAGAGCCGCCT < 41bp 1 0.0604381244030737 1 0.0663478970527649 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RMND5B ENSG00000145916 UTR5 Human protein_coding chr5:177558287 chr5:177558290 . . 0 24 hm5C_associated_SNPs_5498 0 0 1 0 2 RMND5B chr5:177558238 3'AG 177558238 Downstream 53bp
chr5 177558290 177558290 1 + G A rs115379028 177558287 + 177558267 177558307 41 CCAGACTCATAGGTCCCGGCCCAGCCCCCGAAGAGCCGCCT CCAGACTCATAGGTCCCGGCCCAACCCCCGAAGAGCCGCCT < 41bp 1 0.0604381244030737 1 0.0663478970527649 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RMND5B ENSG00000145916 UTR5 Human protein_coding chr5:177558287 chr5:177558290 . . 0 24 hm5C_associated_SNPs_5498 0 0 1 0 2 RMND5B chr5:177558377 5'GT 177558377 Upstream 88bp
chr5 177558290 177558290 1 + G A rs115379028 177558288 + 177558268 177558308 41 CAGACTCATAGGTCCCGGCCCAGCCCCCGAAGAGCCGCCTC CAGACTCATAGGTCCCGGCCCAACCCCCGAAGAGCCGCCTC < 41bp 1 0.278261747247601 1 0.0467808544635773 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RMND5B ENSG00000145916 UTR5 Human protein_coding chr5:177558288 chr5:177558290 . . 0 23 hm5C_associated_SNPs_5499 0 0 1 0 2 RMND5B chr5:177558238 3'AG 177558238 Downstream 53bp
chr5 177558290 177558290 1 + G A rs115379028 177558288 + 177558268 177558308 41 CAGACTCATAGGTCCCGGCCCAGCCCCCGAAGAGCCGCCTC CAGACTCATAGGTCCCGGCCCAACCCCCGAAGAGCCGCCTC < 41bp 1 0.278261747247601 1 0.0467808544635773 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RMND5B ENSG00000145916 UTR5 Human protein_coding chr5:177558288 chr5:177558290 . . 0 23 hm5C_associated_SNPs_5499 0 0 1 0 2 RMND5B chr5:177558377 5'GT 177558377 Upstream 88bp
chr5 177565228 177565228 1 + G A rs551568824 177565214 + 177565194 177565234 41 GTGAGCGGAGCCTGGAGGAGCTGCTGCACTACGTGGGCCAG GTGAGCGGAGCCTGGAGGAGCTGCTGCACTACGTAGGCCAG < 41bp 1 0.66541720389292 1 0.225342273712158 experiment 0.66916559221416 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RMND5B ENSG00000145916 CDS Human protein_coding chr5:177565214 chr5:177565228 synonymous SNV . 0 35 hm5C_associated_SNPs_5500 0 0 1 0 1 RMND5B chr5:177565259 5'GT 177565259 Upstream 32bp
chr5 178353643 178353643 1 + G A rs113421376 178353631 + 178353611 178353651 41 AGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTG AGGTTCACGCCATTCTCCTGCCTCAGCCTCCTAAGTAGCTG < 41bp 1 0.168605625797062 1 0.0483560562133789 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP2 ENSG00000198939 UTR5 Human protein_coding chr5:178353631 chr5:178353643 . . 0 33 hm5C_associated_SNPs_5503 0 0 0 0 1 ZFP2 chr5:178353660 5'GT 178353660 Upstream 18bp
chr5 178353643 178353643 1 + G A rs113421376 178353632 + 178353612 178353652 41 GGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGG GGTTCACGCCATTCTCCTGCCTCAGCCTCCTAAGTAGCTGG < 41bp 1 0.379971332888316 1 0.208552747964859 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP2 ENSG00000198939 UTR5 Human protein_coding chr5:178353632 chr5:178353643 . . 0 32 hm5C_associated_SNPs_5504 0 0 0 0 1 ZFP2 chr5:178353660 5'GT 178353660 Upstream 18bp
chr5 178353643 178353643 1 + G A rs113421376 178353634 + 178353614 178353654 41 TTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGA TTCACGCCATTCTCCTGCCTCAGCCTCCTAAGTAGCTGGGA < 41bp 1 0.312555738519206 1 0.367197781801224 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP2 ENSG00000198939 UTR5 Human protein_coding chr5:178353634 chr5:178353643 . . 0 30 hm5C_associated_SNPs_5505 0 0 0 0 1 ZFP2 chr5:178353660 5'GT 178353660 Upstream 18bp
chr5 178353643 178353643 1 + G A rs113421376 178353637 + 178353617 178353657 41 ACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTA ACGCCATTCTCCTGCCTCAGCCTCCTAAGTAGCTGGGACTA < 41bp 1 0.0712534327864609 1 0.237000972032547 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP2 ENSG00000198939 UTR5 Human protein_coding chr5:178353637 chr5:178353643 . . 0 27 hm5C_associated_SNPs_5506 0 0 0 0 1 ZFP2 chr5:178353660 5'GT 178353660 Upstream 18bp
chr5 178353643 178353643 1 + G A rs113421376 178353638 + 178353618 178353658 41 CGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTAC CGCCATTCTCCTGCCTCAGCCTCCTAAGTAGCTGGGACTAC < 41bp 1 0.239101519573896 1 0.355443775653839 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP2 ENSG00000198939 UTR5 Human protein_coding chr5:178353638 chr5:178353643 . . 0 26 hm5C_associated_SNPs_5507 0 0 0 0 1 ZFP2 chr5:178353660 5'GT 178353660 Upstream 18bp
chr5 178353657 178353657 1 + A G rs34797550 178353637 + 178353617 178353657 41 ACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTA ACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTG < 41bp 1 0.0737396971232484 1 0.184089779853821 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP2 ENSG00000198939 UTR5 Human protein_coding chr5:178353637 chr5:178353657 . . 0 41 hm5C_associated_SNPs_5508 0 0 0 0 1 ZFP2 chr5:178353660 5'GT 178353660 Upstream 4bp
chr5 178353657 178353657 1 + A G rs34797550 178353638 + 178353618 178353658 41 CGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTAC CGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTGC < 41bp 1 0.270783797232188 1 0.564686477184296 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP2 ENSG00000198939 UTR5 Human protein_coding chr5:178353638 chr5:178353657 . . 0 40 hm5C_associated_SNPs_5509 0 0 0 0 1 ZFP2 chr5:178353660 5'GT 178353660 Upstream 4bp
chr5 179012818 179012818 1 + A G rs376303394 179012813 + 179012793 179012833 41 ACAGCTGCACAGTTGGGGATCTTCAAACCAAGATAGATGGC ACAGCTGCACAGTTGGGGATCTTCAGACCAAGATAGATGGC < 41bp 1 0.299080476893673 1 0.137283325195312 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179012813 chr5:179012818 synonymous SNV . 0 26 hm5C_associated_SNPs_5510 0 0 1 0 2 RUFY1 chr5:179012797 3'AG 179012797 Downstream 22bp
chr5 179012818 179012818 1 + A G rs376303394 179012813 + 179012793 179012833 41 ACAGCTGCACAGTTGGGGATCTTCAAACCAAGATAGATGGC ACAGCTGCACAGTTGGGGATCTTCAGACCAAGATAGATGGC < 41bp 1 0.299080476893673 1 0.137283325195312 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179012813 chr5:179012818 synonymous SNV . 0 26 hm5C_associated_SNPs_5510 0 0 1 0 2 RUFY1 chr5:179012866 5'GT 179012866 Upstream 49bp
chr5 179025789 179025789 1 + G A rs72824522 179025776 + 179025756 179025796 41 ACAGCACGAGAAAGACACTTCCTCTCTACTCAGGATGGAGC ACAGCACGAGAAAGACACTTCCTCTCTACTCAGAATGGAGC < 41bp 1 0.0370006210934381 1 0.116391271352768 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179025776 chr5:179025789 synonymous SNV . 0 34 hm5C_associated_SNPs_5511 0 0 1 0 2 RUFY1 chr5:179025693 3'AG 179025693 Downstream 97bp
chr5 179025789 179025789 1 + G A rs72824522 179025776 + 179025756 179025796 41 ACAGCACGAGAAAGACACTTCCTCTCTACTCAGGATGGAGC ACAGCACGAGAAAGACACTTCCTCTCTACTCAGAATGGAGC < 41bp 1 0.0370006210934381 1 0.116391271352768 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179025776 chr5:179025789 synonymous SNV . 0 34 hm5C_associated_SNPs_5511 0 0 1 0 2 RUFY1 chr5:179025822 5'GT 179025822 Upstream 34bp
chr5 179146757 179146757 1 + C A rs143596594 179146740 + 179146720 179146760 41 AGGCTGGTTAGATGATGAGCCTGAGTACGTACCTGATCCAG AGGCTGGTTAGATGATGAGCCTGAGTACGTACCTGATACAG < 41bp 1 0.672077066530938 1 0.36231255531311 experiment 0.655845866938124 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179146740 chr5:179146757 nonsynonymous SNV 0.185 4 38 hm5C_associated_SNPs_5512 0 0 1 0 2 CANX chr5:179146669 3'AG 179146669 Downstream 89bp
chr5 179146757 179146757 1 + C A rs143596594 179146740 + 179146720 179146760 41 AGGCTGGTTAGATGATGAGCCTGAGTACGTACCTGATCCAG AGGCTGGTTAGATGATGAGCCTGAGTACGTACCTGATACAG < 41bp 1 0.672077066530938 1 0.36231255531311 experiment 0.655845866938124 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179146740 chr5:179146757 nonsynonymous SNV 0.185 4 38 hm5C_associated_SNPs_5512 0 0 1 0 2 CANX chr5:179146782 5'GT 179146782 Upstream 26bp
chr5 179146757 179146757 1 + C A rs143596594 179146752 + 179146732 179146772 41 TGATGAGCCTGAGTACGTACCTGATCCAGACGCAGAGAAAC TGATGAGCCTGAGTACGTACCTGATACAGACGCAGAGAAAC < 41bp 1 0.485220995321519 1 0.130354642868042 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179146752 chr5:179146757 nonsynonymous SNV 0.185 4 26 hm5C_associated_SNPs_5513 0 0 1 0 2 CANX chr5:179146669 3'AG 179146669 Downstream 89bp
chr5 179146757 179146757 1 + C A rs143596594 179146752 + 179146732 179146772 41 TGATGAGCCTGAGTACGTACCTGATCCAGACGCAGAGAAAC TGATGAGCCTGAGTACGTACCTGATACAGACGCAGAGAAAC < 41bp 1 0.485220995321519 1 0.130354642868042 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179146752 chr5:179146757 nonsynonymous SNV 0.185 4 26 hm5C_associated_SNPs_5513 0 0 1 0 2 CANX chr5:179146782 5'GT 179146782 Upstream 26bp
chr5 179146757 179146757 1 + C A rs143596594 179146762 + 179146742 179146782 41 GAGTACGTACCTGATCCAGACGCAGAGAAACCTGAGGATTG GAGTACGTACCTGATACAGACGCAGAGAAACCTGAGGATTG < 41bp 1 0.572576918069242 1 0.0532509088516235 experiment 0.854846163861516 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179146762 chr5:179146757 nonsynonymous SNV 0.185 4 16 hm5C_associated_SNPs_5514 0 0 1 0 2 CANX chr5:179146669 3'AG 179146669 Downstream 89bp
chr5 179146757 179146757 1 + C A rs143596594 179146762 + 179146742 179146782 41 GAGTACGTACCTGATCCAGACGCAGAGAAACCTGAGGATTG GAGTACGTACCTGATACAGACGCAGAGAAACCTGAGGATTG < 41bp 1 0.572576918069242 1 0.0532509088516235 experiment 0.854846163861516 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179146762 chr5:179146757 nonsynonymous SNV 0.185 4 16 hm5C_associated_SNPs_5514 0 0 1 0 2 CANX chr5:179146782 5'GT 179146782 Upstream 26bp
chr5 179146757 179146757 1 + C A rs143596594 179146764 + 179146744 179146784 41 GTACGTACCTGATCCAGACGCAGAGAAACCTGAGGATTGGT GTACGTACCTGATACAGACGCAGAGAAACCTGAGGATTGGT < 41bp 1 0.46274990842438 1 0.284559905529022 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179146764 chr5:179146757 nonsynonymous SNV 0.185 4 14 hm5C_associated_SNPs_5515 0 0 1 0 2 CANX chr5:179146669 3'AG 179146669 Downstream 89bp
chr5 179146757 179146757 1 + C A rs143596594 179146764 + 179146744 179146784 41 GTACGTACCTGATCCAGACGCAGAGAAACCTGAGGATTGGT GTACGTACCTGATACAGACGCAGAGAAACCTGAGGATTGGT < 41bp 1 0.46274990842438 1 0.284559905529022 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179146764 chr5:179146757 nonsynonymous SNV 0.185 4 14 hm5C_associated_SNPs_5515 0 0 1 0 2 CANX chr5:179146782 5'GT 179146782 Upstream 26bp
chr5 179146757 179146757 1 + C A rs143596594 179146773 + 179146753 179146793 41 TGATCCAGACGCAGAGAAACCTGAGGATTGGTAAGAACTTC TGATACAGACGCAGAGAAACCTGAGGATTGGTAAGAACTTC < 41bp 1 0.712769323180204 1 0.272528350353241 experiment 0.574461353639592 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179146773 chr5:179146757 nonsynonymous SNV 0.185 4 5 hm5C_associated_SNPs_5516 0 0 1 0 2 CANX chr5:179146669 3'AG 179146669 Downstream 89bp
chr5 179146757 179146757 1 + C A rs143596594 179146773 + 179146753 179146793 41 TGATCCAGACGCAGAGAAACCTGAGGATTGGTAAGAACTTC TGATACAGACGCAGAGAAACCTGAGGATTGGTAAGAACTTC < 41bp 1 0.712769323180204 1 0.272528350353241 experiment 0.574461353639592 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179146773 chr5:179146757 nonsynonymous SNV 0.185 4 5 hm5C_associated_SNPs_5516 0 0 1 0 2 CANX chr5:179146782 5'GT 179146782 Upstream 26bp
chr5 179151758 179151758 1 + A G rs75423033 179151747 + 179151727 179151767 41 GAGAAGGAAGAGGAAAAGGACAAGGGAGATGAGGAGGAGGA GAGAAGGAAGAGGAAAAGGACAAGGGAGATGGGGAGGAGGA < 41bp 1 0.780217411037814 1 0.548976004123688 experiment 0.439565177924372 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151747 chr5:179151758 nonsynonymous SNV 0.969 0 32 hm5C_associated_SNPs_5517 0 0 1 0 1 CANX chr5:179151784 5'GT 179151784 Upstream 27bp
chr5 179151776 179151776 1 + A G rs143348712 179151781 + 179151761 179151801 41 AGGAGGAAGGAGAAGAGAAACTTGGTAAGAAACAGAGTCCA AGGAGGAAGGAGAAGGGAAACTTGGTAAGAAACAGAGTCCA < 41bp 1 0.723187385673848 1 0.310210049152374 experiment 0.553625228652303 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179151781 chr5:179151776 nonsynonymous SNV 0.893 0 16 hm5C_associated_SNPs_5518 0 0 1 0 1 CANX chr5:179151784 5'GT 179151784 Upstream 9bp
chr5 179153686 179153686 1 + A G rs111809764 179153689 + 179153669 179153709 41 CTTCTGTCTTAGAAGAGAAACAGAAAAGTGATGCTGAAGAA CTTCTGTCTTAGAAGAGGAACAGAAAAGTGATGCTGAAGAA < 41bp 1 0.551472454075919 1 0.406494617462158 experiment 0.897055091848163 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179153689 chr5:179153686 nonsynonymous SNV 1.000 0 18 hm5C_associated_SNPs_5519 0 0 1 0 2 CANX chr5:179153681 3'AG 179153681 Downstream 6bp
chr5 179153686 179153686 1 + A G rs111809764 179153689 + 179153669 179153709 41 CTTCTGTCTTAGAAGAGAAACAGAAAAGTGATGCTGAAGAA CTTCTGTCTTAGAAGAGGAACAGAAAAGTGATGCTGAAGAA < 41bp 1 0.551472454075919 1 0.406494617462158 experiment 0.897055091848163 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179153689 chr5:179153686 nonsynonymous SNV 1.000 0 18 hm5C_associated_SNPs_5519 0 0 1 0 2 CANX chr5:179153760 5'GT 179153760 Upstream 75bp
chr5 179153686 179153686 1 + A G rs111809764 179153702 + 179153682 179153722 41 AGAGAAACAGAAAAGTGATGCTGAAGAAGATGGTGGCACTG AGAGGAACAGAAAAGTGATGCTGAAGAAGATGGTGGCACTG < 41bp 1 0.72902461437307 1 0.403119564056396 experiment 0.54195077125386 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179153702 chr5:179153686 nonsynonymous SNV 1.000 0 5 hm5C_associated_SNPs_5520 0 0 1 0 2 CANX chr5:179153681 3'AG 179153681 Downstream 6bp
chr5 179153686 179153686 1 + A G rs111809764 179153702 + 179153682 179153722 41 AGAGAAACAGAAAAGTGATGCTGAAGAAGATGGTGGCACTG AGAGGAACAGAAAAGTGATGCTGAAGAAGATGGTGGCACTG < 41bp 1 0.72902461437307 1 0.403119564056396 experiment 0.54195077125386 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179153702 chr5:179153686 nonsynonymous SNV 1.000 0 5 hm5C_associated_SNPs_5520 0 0 1 0 2 CANX chr5:179153760 5'GT 179153760 Upstream 75bp
chr6 3015772 3015772 1 + G A rs146678417 3015789 + 3015769 3015809 41 GCTGTACTGGTTCAGCGTGCCAGCCATCCTGAAGGGCTGGA GCTATACTGGTTCAGCGTGCCAGCCATCCTGAAGGGCTGGA < 41bp 1 0.394627439630788 1 0.129826933145523 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NQO2 ENSG00000124588 CDS Human protein_coding chr6:3015789 chr6:3015772 synonymous SNV . 0 4 hm5C_associated_SNPs_5658 0 0 1 0 1 NQO2 chr6:3015764 3'AG 3015764 Downstream 9bp
chr6 3015790 3015790 1 + A G rs1049115 3015789 + 3015769 3015809 41 GCTGTACTGGTTCAGCGTGCCAGCCATCCTGAAGGGCTGGA GCTGTACTGGTTCAGCGTGCCGGCCATCCTGAAGGGCTGGA < 41bp 1 0.471314040090062 1 0.171331703662872 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NQO2 ENSG00000124588 CDS Human protein_coding chr6:3015789 chr6:3015790 synonymous SNV . 0 22 hm5C_associated_SNPs_5659 0 0 1 0 2 NQO2 chr6:3015764 3'AG 3015764 Downstream 27bp
chr6 3015790 3015790 1 + A G rs1049115 3015789 + 3015769 3015809 41 GCTGTACTGGTTCAGCGTGCCAGCCATCCTGAAGGGCTGGA GCTGTACTGGTTCAGCGTGCCGGCCATCCTGAAGGGCTGGA < 41bp 1 0.471314040090062 1 0.171331703662872 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NQO2 ENSG00000124588 CDS Human protein_coding chr6:3015789 chr6:3015790 synonymous SNV . 0 22 hm5C_associated_SNPs_5659 0 0 1 0 2 NQO2 chr6:3015877 5'GT 3015877 Upstream 88bp
chr6 3152760 3152760 1 + T C rs2231370 3152743 + 3152723 3152763 41 CTGCATTTGATGCCAGAAGGCAAACACAACCTGCATTTGCG CTGCATTTGATGCCAGAAGGCAAACACAACCTGCATTCGCG < 41bp 1 0.136135156427032 1 0.455189645290375 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BPHL ENSG00000137274 CDS Human protein_coding chr6:3152743 chr6:3152760 nonsynonymous SNV 0.971 4 38 hm5C_associated_SNPs_5660 0 0 1 0 1 BPHL chr6:3152722 3'AG 3152722 Downstream 39bp
chr6 5261845 5261845 1 + A C rs2753246 5261846 + 5261826 5261866 41 GAGCGAACGAGCCTGCCGTACTTCTGATTTTGAAACACCTG GAGCGAACGAGCCTGCCGTCCTTCTGATTTTGAAACACCTG < 41bp 1 0.0714362927126098 1 0.0771406292915344 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FARS2 ENSG00000145982 UTR5 Human protein_coding chr6:5261846 chr6:5261845 . . 0 20 hm5C_associated_SNPs_5663 0 0 1 0 1 FARS2 chr6:5261893 5'GT 5261893 Upstream 49bp
chr6 7572262 7572262 1 + A G rs2076304 7572244 + 7572224 7572264 41 AGGATGACTCTCAAAAACCTCCCTCTAGCAGACCAGGGATC AGGATGACTCTCAAAAACCTCCCTCTAGCAGACCAGGGGTC < 41bp 1 0.0414207772916497 1 0.0501182675361633 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572244 chr6:7572262 synonymous SNV . 0 39 hm5C_associated_SNPs_5669 4 0 1 0 1 DSP chr6:7572301 5'GT 7572301 Upstream 40bp
chr6 7579933 7579933 1 + G A rs28763964 7579952 + 7579932 7579972 41 AGATTGAAAGGTTGAGGGTTCTACTGCAGGAAGAAGGCACC AAATTGAAAGGTTGAGGGTTCTACTGCAGGAAGAAGGCACC < 41bp 1 0.184868812155402 1 0.277094721794128 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7579952 chr6:7579933 synonymous SNV . 0 2 hm5C_associated_SNPs_5670 8 0 1 0 1 DSP chr6:7580005 5'GT 7580005 Upstream 73bp
chr6 13615767 13615767 1 + T C rs75029999 13615758 + 13615738 13615778 41 GAGGAAGACGAGGAAGGGGACGATGAGTTTGACGATGAGGC GAGGAAGACGAGGAAGGGGACGATGAGTTCGACGATGAGGC < 41bp 1 0.567849069438354 1 0.394457340240479 experiment 0.864301861123293 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOL7 ENSG00000225921 CDS Human protein_coding chr6:13615758 chr6:13615767 synonymous SNV . 0 30 hm5C_associated_SNPs_5676 0 0 1 0 1 NOL7 chr6:13615856 5'GT 13615856 Upstream 90bp
chr6 13616709 13616709 1 + T A rs141864975 13616704 + 13616684 13616724 41 CATTCCAAAAGAAAAGAAAACTCCTTCCAGACACTATTTTG CATTCCAAAAGAAAAGAAAACTCCTACCAGACACTATTTTG < 41bp 1 0.331831852745083 1 0.258209943771362 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOL7 ENSG00000225921 CDS Human protein_coding chr6:13616704 chr6:13616709 synonymous SNV . 0 26 hm5C_associated_SNPs_5677 0 0 1 0 2 NOL7 chr6:13616695 3'AG 13616695 Downstream 15bp
chr6 13616709 13616709 1 + T A rs141864975 13616704 + 13616684 13616724 41 CATTCCAAAAGAAAAGAAAACTCCTTCCAGACACTATTTTG CATTCCAAAAGAAAAGAAAACTCCTACCAGACACTATTTTG < 41bp 1 0.331831852745083 1 0.258209943771362 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOL7 ENSG00000225921 CDS Human protein_coding chr6:13616704 chr6:13616709 synonymous SNV . 0 26 hm5C_associated_SNPs_5677 0 0 1 0 2 NOL7 chr6:13616753 5'GT 13616753 Upstream 45bp
chr6 13616712 13616712 1 + A G rs3757262 13616704 + 13616684 13616724 41 CATTCCAAAAGAAAAGAAAACTCCTTCCAGACACTATTTTG CATTCCAAAAGAAAAGAAAACTCCTTCCGGACACTATTTTG < 41bp 1 0.366788756957157 1 0.24390509724617 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOL7 ENSG00000225921 CDS Human protein_coding chr6:13616704 chr6:13616712 synonymous SNV . 0 29 hm5C_associated_SNPs_5678 0 0 1 0 2 NOL7 chr6:13616695 3'AG 13616695 Downstream 18bp
chr6 13616712 13616712 1 + A G rs3757262 13616704 + 13616684 13616724 41 CATTCCAAAAGAAAAGAAAACTCCTTCCAGACACTATTTTG CATTCCAAAAGAAAAGAAAACTCCTTCCGGACACTATTTTG < 41bp 1 0.366788756957157 1 0.24390509724617 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOL7 ENSG00000225921 CDS Human protein_coding chr6:13616704 chr6:13616712 synonymous SNV . 0 29 hm5C_associated_SNPs_5678 0 0 1 0 2 NOL7 chr6:13616753 5'GT 13616753 Upstream 42bp
chr6 15487583 15487583 1 + A C rs35990127 15487577 + 15487557 15487597 41 GTCAACACGGGAGAAGGAACCTGTTCAAAAACACAAAAGCA GTCAACACGGGAGAAGGAACCTGTTCCAAAACACAAAAGCA < 41bp 1 0.1015445488863 1 0.329536080360413 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control JARID2 ENSG00000008083 CDS Human protein_coding chr6:15487577 chr6:15487583 nonsynonymous SNV 0.989 0 27 hm5C_associated_SNPs_5681 0 0 1 0 1 JARID2 chr6:15487538 3'AG 15487538 Downstream 46bp
chr6 19839473 19839473 1 + C T rs9689909 19839459 + 19839439 19839479 41 AGGTGTGCGGCCGCCTGAGCCCGAGCCAGGAGCACTAGAGA AGGTGTGCGGCCGCCTGAGCCCGAGCCAGGAGCATTAGAGA < 41bp 1 0.617936039285445 1 0.703493297100067 experiment 0.764127921429111 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ID4 ENSG00000172201 UTR3 Human protein_coding chr6:19839459 chr6:19839473 . . 0 35 hm5C_associated_SNPs_5684 0 0 1 0 1 ID4 chr6:19839441 3'AG 19839441 Downstream 33bp
chr6 19839473 19839473 1 + C T rs9689909 19839464 + 19839444 19839484 41 TGCGGCCGCCTGAGCCCGAGCCAGGAGCACTAGAGAGGGAG TGCGGCCGCCTGAGCCCGAGCCAGGAGCATTAGAGAGGGAG < 41bp 1 0.556838643011981 1 0.707939863204956 experiment 0.886322713976038 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ID4 ENSG00000172201 UTR3 Human protein_coding chr6:19839464 chr6:19839473 . . 0 30 hm5C_associated_SNPs_5685 0 0 1 0 1 ID4 chr6:19839441 3'AG 19839441 Downstream 33bp
chr6 19839473 19839473 1 + C T rs9689909 19839471 + 19839451 19839491 41 GCCTGAGCCCGAGCCAGGAGCACTAGAGAGGGAGGGGGAAG GCCTGAGCCCGAGCCAGGAGCATTAGAGAGGGAGGGGGAAG < 41bp 1 0.618567969323527 1 0.136326014995575 experiment 0.762864061352946 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ID4 ENSG00000172201 UTR3 Human protein_coding chr6:19839471 chr6:19839473 . . 0 23 hm5C_associated_SNPs_5686 0 0 1 0 1 ID4 chr6:19839441 3'AG 19839441 Downstream 33bp
chr6 21198307 21198307 1 + A T rs553804984 21198317 + 21198297 21198337 41 TCCAAGTTTTATGTTGCACACAATCAATTCTATGAGCAGGT TCCAAGTTTTTTGTTGCACACAATCAATTCTATGAGCAGGT < 41bp 1 0.0451034779149847 1 0.0589894950389862 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDKAL1 ENSG00000145996 CDS Human protein_coding chr6:21198317 chr6:21198307 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_5691 0 0 0 0 2 CDKAL1 chr6:21198252 3'AG 21198252 Downstream 56bp
chr6 21198307 21198307 1 + A T rs553804984 21198317 + 21198297 21198337 41 TCCAAGTTTTATGTTGCACACAATCAATTCTATGAGCAGGT TCCAAGTTTTTTGTTGCACACAATCAATTCTATGAGCAGGT < 41bp 1 0.0451034779149847 1 0.0589894950389862 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDKAL1 ENSG00000145996 CDS Human protein_coding chr6:21198317 chr6:21198307 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_5691 0 0 0 0 2 CDKAL1 chr6:21198335 5'GT 21198335 Upstream 29bp
chr6 24423254 24423254 1 + G A rs145494145 24423252 + 24423232 24423272 41 TGCTTTCATTCCTTGGACGACAGCTAGAAGCTCCATTGCCT TGCTTTCATTCCTTGGACGACAACTAGAAGCTCCATTGCCT < 41bp 1 0.352827652814925 1 0.0203087627887726 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRS2 ENSG00000124532 CDS Human protein_coding chr6:24423252 chr6:24423254 synonymous SNV . 0 23 hm5C_associated_SNPs_5713 0 0 1 0 2 MRS2 chr6:24423165 3'AG 24423165 Downstream 90bp
chr6 24423254 24423254 1 + G A rs145494145 24423252 + 24423232 24423272 41 TGCTTTCATTCCTTGGACGACAGCTAGAAGCTCCATTGCCT TGCTTTCATTCCTTGGACGACAACTAGAAGCTCCATTGCCT < 41bp 1 0.352827652814925 1 0.0203087627887726 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRS2 ENSG00000124532 CDS Human protein_coding chr6:24423252 chr6:24423254 synonymous SNV . 0 23 hm5C_associated_SNPs_5713 0 0 1 0 2 MRS2 chr6:24423278 5'GT 24423278 Upstream 25bp
chr6 25450202 25450202 1 + G A rs534828880 25450192 + 25450172 25450212 41 AGTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAGCA AGTCTCCAGGCGCTGTGGGACAGCCAGACCATGGCTGAGCA < 41bp 1 0.473335982597773 1 0.482809901237488 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25450192 chr6:25450202 nonsynonymous SNV 0.833 0 31 hm5C_associated_SNPs_5715 0 0 0 0 2 CARMIL1 chr6:25450126 3'AG 25450126 Downstream 77bp
chr6 25450202 25450202 1 + G A rs534828880 25450192 + 25450172 25450212 41 AGTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAGCA AGTCTCCAGGCGCTGTGGGACAGCCAGACCATGGCTGAGCA < 41bp 1 0.473335982597773 1 0.482809901237488 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25450192 chr6:25450202 nonsynonymous SNV 0.833 0 31 hm5C_associated_SNPs_5715 0 0 0 0 2 CARMIL1 chr6:25450223 5'GT 25450223 Upstream 22bp
chr6 25551234 25551234 1 + G A rs540573662 25551227 + 25551207 25551247 41 CGACAAGACTTGATTCATGCCAGCACCGAAAAGATTTCTAT CGACAAGACTTGATTCATGCCAGCACCAAAAAGATTTCTAT < 41bp 1 0.413945312402259 1 0.463811099529266 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25551227 chr6:25551234 nonsynonymous SNV 0.997 2 28 hm5C_associated_SNPs_5716 0 0 0 0 2 CARMIL1 chr6:25551138 3'AG 25551138 Downstream 97bp
chr6 25551234 25551234 1 + G A rs540573662 25551227 + 25551207 25551247 41 CGACAAGACTTGATTCATGCCAGCACCGAAAAGATTTCTAT CGACAAGACTTGATTCATGCCAGCACCAAAAAGATTTCTAT < 41bp 1 0.413945312402259 1 0.463811099529266 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25551227 chr6:25551234 nonsynonymous SNV 0.997 2 28 hm5C_associated_SNPs_5716 0 0 0 0 2 CARMIL1 chr6:25551313 5'GT 25551313 Upstream 80bp
chr6 26093180 26093180 1 + T C rs143175221 26093171 + 26093151 26093191 41 GCACCCAGGCCTGGATCAGCCCCTCATTGTGATCTGGGGTA GCACCCAGGCCTGGATCAGCCCCTCATTGCGATCTGGGGTA < 41bp 1 0.210760155118509 1 0.0476510524749756 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26093171 chr6:26093180 nonsynonymous SNV 0.003 0 30 hm5C_associated_SNPs_5718 0 0 1 0 1 HFE chr6:26093188 5'GT 26093188 Upstream 9bp
chr6 26467987 26467987 1 + C G rs114905060 26467975 + 26467955 26467995 41 TTCTTCTCAAACTGAGAGAACTGCTTCTGTCTCTGGAGAGA TTCTTCTCAAACTGAGAGAACTGCTTCTGTCTGTGGAGAGA < 41bp 1 0.182832489812364 1 0.0552840530872345 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BTN2A1 ENSG00000112763 UTR3 Human protein_coding chr6:26467975 chr6:26467987 . . 0 33 hm5C_associated_SNPs_5771 0 0 0 0 1 BTN2A1 chr6:26467947 3'AG 26467947 Downstream 41bp
chr6 28117381 28117381 1 + C T rs376655976 28117361 + 28117341 28117381 41 TCAGCTCCAATCTGAGGCAACCCAACATAAATCTCCAGTGC TCAGCTCCAATCTGAGGCAACCCAACATAAATCTCCAGTGT < 41bp 1 0.312218617580824 1 0.0608233511447906 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZKSCAN8 ENSG00000198315 CDS Human protein_coding chr6:28117361 chr6:28117381 nonsynonymous SNV 0.028 0 41 hm5C_associated_SNPs_6351 0 0 1 0 1 ZKSCAN8 chr6:28117402 5'GT 28117402 Upstream 22bp
chr6 29693233 29693233 1 + C T rs57237143 29693226 + 29693206 29693246 41 CTTCCCTTCCTTTCCCAGAGCAGTCTCCCCAGCCCACCATC CTTCCCTTCCTTTCCCAGAGCAGTCTCTCCAGCCCACCATC < 41bp 1 0.204146981914463 1 0.121273249387741 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HLA-F ENSG00000204642 CDS Human protein_coding chr6:29693226 chr6:29693233 nonsynonymous SNV 0.013 1 28 hm5C_associated_SNPs_6711 0 0 1 0 1 HLA-F chr6:29693224 3'AG 29693224 Downstream 10bp
chr6 29856303 29856303 1 + C T rs1611613 29856315 + 29856295 29856335 41 GCTTCCTCCGCGGGTATGAACAGCACGCCTACGACGGCAAG GCTTCCTCTGCGGGTATGAACAGCACGCCTACGACGGCAAG < 41bp 1 0.582635758411304 1 0.691569805145264 experiment 0.834728483177391 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HLA-H ENSG00000206341 ncRNA_exonic Human unprocessed_pseudogene chr6:29856315 chr6:29856303 . . 0 9 hm5C_associated_SNPs_6713 0 0 0 0 1 HLA-H chr6:29856244 3'AG 29856244 Downstream 60bp
chr6 29856311 29856311 1 + T C rs533707369 29856315 + 29856295 29856335 41 GCTTCCTCCGCGGGTATGAACAGCACGCCTACGACGGCAAG GCTTCCTCCGCGGGTACGAACAGCACGCCTACGACGGCAAG < 41bp 1 0.5505604733698 1 0.627063393592834 experiment 0.898879053260401 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HLA-H ENSG00000206341 ncRNA_exonic Human unprocessed_pseudogene chr6:29856315 chr6:29856311 . . 0 17 hm5C_associated_SNPs_6714 0 0 0 0 1 HLA-H chr6:29856244 3'AG 29856244 Downstream 68bp
chr6 29856312 29856312 1 + G A rs553922966 29856315 + 29856295 29856335 41 GCTTCCTCCGCGGGTATGAACAGCACGCCTACGACGGCAAG GCTTCCTCCGCGGGTATAAACAGCACGCCTACGACGGCAAG < 41bp 1 0.665815230545268 1 0.56841254234314 experiment 0.668369538909464 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HLA-H ENSG00000206341 ncRNA_exonic Human unprocessed_pseudogene chr6:29856315 chr6:29856312 . . 0 18 hm5C_associated_SNPs_6715 0 0 0 0 1 HLA-H chr6:29856244 3'AG 29856244 Downstream 69bp
chr6 29856314 29856314 1 + A C rs577110292 29856315 + 29856295 29856335 41 GCTTCCTCCGCGGGTATGAACAGCACGCCTACGACGGCAAG GCTTCCTCCGCGGGTATGACCAGCACGCCTACGACGGCAAG < 41bp 1 0.579713074158177 1 0.755620181560516 experiment 0.840573851683646 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HLA-H ENSG00000206341 ncRNA_exonic Human unprocessed_pseudogene chr6:29856315 chr6:29856314 . . 0 20 hm5C_associated_SNPs_6716 0 0 0 0 1 HLA-H chr6:29856244 3'AG 29856244 Downstream 71bp
chr6 29856318 29856318 1 + C G rs546057150 29856315 + 29856295 29856335 41 GCTTCCTCCGCGGGTATGAACAGCACGCCTACGACGGCAAG GCTTCCTCCGCGGGTATGAACAGGACGCCTACGACGGCAAG < 41bp 1 0.715952961389825 1 0.870796322822571 experiment 0.56809407722035 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HLA-H ENSG00000206341 ncRNA_exonic Human unprocessed_pseudogene chr6:29856315 chr6:29856318 . . 0 24 hm5C_associated_SNPs_6717 0 0 0 0 1 HLA-H chr6:29856244 3'AG 29856244 Downstream 75bp
chr6 29856330 29856330 1 + G A rs2428512 29856315 + 29856295 29856335 41 GCTTCCTCCGCGGGTATGAACAGCACGCCTACGACGGCAAG GCTTCCTCCGCGGGTATGAACAGCACGCCTACGACAGCAAG < 41bp 1 0.568349714245646 1 0.413462042808533 experiment 0.863300571508709 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HLA-H ENSG00000206341 ncRNA_exonic Human unprocessed_pseudogene chr6:29856315 chr6:29856330 . . 0 36 hm5C_associated_SNPs_6718 0 0 0 0 1 HLA-H chr6:29856244 3'AG 29856244 Downstream 87bp
chr6 29911256 29911256 1 + T A rs1059542 29911265 + 29911245 29911285 41 GCCTACCTGGATGGCACGTGCGTGGAGTGGCTCCGCAGATA GCCTACCTGGAAGGCACGTGCGTGGAGTGGCTCCGCAGATA < 41bp 1 0.585054444615514 1 0.4251349568367 experiment 0.829891110768972 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911265 chr6:29911256 nonsynonymous SNV 0.005 0 12 hm5C_associated_SNPs_6725 0 0 1 0 1 HLA-A chr6:29911320 5'GT 29911320 Upstream 65bp
chr6 29911260 29911260 1 + A C rs543623321 29911265 + 29911245 29911285 41 GCCTACCTGGATGGCACGTGCGTGGAGTGGCTCCGCAGATA GCCTACCTGGATGGCCCGTGCGTGGAGTGGCTCCGCAGATA < 41bp 1 0.585830330319252 1 0.461565613746643 experiment 0.828339339361497 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911265 chr6:29911260 nonsynonymous SNV 0.000 0 16 hm5C_associated_SNPs_6726 0 0 1 0 1 HLA-A chr6:29911320 5'GT 29911320 Upstream 61bp
chr6 29911260 29911260 1 + A C rs543623321 29911277 + 29911257 29911297 41 GGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGG GGCCCGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGG < 41bp 1 0.591449294038074 1 0.180871844291687 experiment 0.817101411923853 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911277 chr6:29911260 nonsynonymous SNV 0.000 0 4 hm5C_associated_SNPs_6727 0 0 1 0 1 HLA-A chr6:29911320 5'GT 29911320 Upstream 61bp
chr6 29911260 29911260 1 + A C rs543623321 29911278 + 29911258 29911298 41 GCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGG GCCCGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGG < 41bp 1 0.46316561906773 1 0.515647530555725 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911278 chr6:29911260 nonsynonymous SNV 0.000 0 3 hm5C_associated_SNPs_6728 0 0 1 0 1 HLA-A chr6:29911320 5'GT 29911320 Upstream 61bp
chr6 29911271 29911271 1 + G C rs879577815 29911265 + 29911245 29911285 41 GCCTACCTGGATGGCACGTGCGTGGAGTGGCTCCGCAGATA GCCTACCTGGATGGCACGTGCGTGGACTGGCTCCGCAGATA < 41bp 1 0.5657046024657 1 0.405526280403137 experiment 0.8685907950686 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911265 chr6:29911271 nonsynonymous SNV 0.005 0 27 hm5C_associated_SNPs_6729 0 0 0 0 1 HLA-A chr6:29911320 5'GT 29911320 Upstream 50bp
chr6 29911271 29911271 1 + G C rs879577815 29911277 + 29911257 29911297 41 GGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGG GGCACGTGCGTGGACTGGCTCCGCAGATACCTGGAGAACGG < 41bp 1 0.567674795883049 1 0.161789447069168 experiment 0.864650408233901 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911277 chr6:29911271 nonsynonymous SNV 0.005 0 15 hm5C_associated_SNPs_6730 0 0 0 0 1 HLA-A chr6:29911320 5'GT 29911320 Upstream 50bp
chr6 29911271 29911271 1 + G C rs879577815 29911278 + 29911258 29911298 41 GCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGG GCACGTGCGTGGACTGGCTCCGCAGATACCTGGAGAACGGG < 41bp 1 0.405656606688441 1 0.394662618637085 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911278 chr6:29911271 nonsynonymous SNV 0.005 0 14 hm5C_associated_SNPs_6731 0 0 0 0 1 HLA-A chr6:29911320 5'GT 29911320 Upstream 50bp
chr6 29911272 29911272 1 + T A rs3098019 29911265 + 29911245 29911285 41 GCCTACCTGGATGGCACGTGCGTGGAGTGGCTCCGCAGATA GCCTACCTGGATGGCACGTGCGTGGAGAGGCTCCGCAGATA < 41bp 1 0.592603726610829 1 0.383635848760605 experiment 0.814792546778342 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911265 chr6:29911272 nonsynonymous SNV 0.003 1 28 hm5C_associated_SNPs_6732 0 0 0 0 1 HLA-A chr6:29911320 5'GT 29911320 Upstream 49bp
chr6 29911272 29911272 1 + T A rs3098019 29911277 + 29911257 29911297 41 GGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGG GGCACGTGCGTGGAGAGGCTCCGCAGATACCTGGAGAACGG < 41bp 1 0.552800109043016 1 0.129175812005997 experiment 0.894399781913968 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911277 chr6:29911272 nonsynonymous SNV 0.003 1 16 hm5C_associated_SNPs_6733 0 0 0 0 1 HLA-A chr6:29911320 5'GT 29911320 Upstream 49bp
chr6 29911272 29911272 1 + T A rs3098019 29911278 + 29911258 29911298 41 GCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGG GCACGTGCGTGGAGAGGCTCCGCAGATACCTGGAGAACGGG < 41bp 1 0.43993615647795 1 0.341044902801514 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911278 chr6:29911272 nonsynonymous SNV 0.003 1 15 hm5C_associated_SNPs_6734 0 0 0 0 1 HLA-A chr6:29911320 5'GT 29911320 Upstream 49bp
chr6 29911284 29911284 1 + T C rs41563116 29911265 + 29911245 29911285 41 GCCTACCTGGATGGCACGTGCGTGGAGTGGCTCCGCAGATA GCCTACCTGGATGGCACGTGCGTGGAGTGGCTCCGCAGACA < 41bp 1 0.574719552906971 1 0.322111189365387 experiment 0.850560894186059 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911265 chr6:29911284 nonsynonymous SNV 0.002 2 40 hm5C_associated_SNPs_6735 0 0 1 0 1 HLA-A chr6:29911320 5'GT 29911320 Upstream 37bp
chr6 29911284 29911284 1 + T C rs41563116 29911277 + 29911257 29911297 41 GGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGG GGCACGTGCGTGGAGTGGCTCCGCAGACACCTGGAGAACGG < 41bp 1 0.58430648513266 1 0.245710849761963 experiment 0.83138702973468 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911277 chr6:29911284 nonsynonymous SNV 0.002 2 28 hm5C_associated_SNPs_6736 0 0 1 0 1 HLA-A chr6:29911320 5'GT 29911320 Upstream 37bp
chr6 29911284 29911284 1 + T C rs41563116 29911278 + 29911258 29911298 41 GCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGG GCACGTGCGTGGAGTGGCTCCGCAGACACCTGGAGAACGGG < 41bp 1 0.389149413702261 1 0.641611278057098 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911278 chr6:29911284 nonsynonymous SNV 0.002 2 27 hm5C_associated_SNPs_6737 0 0 1 0 1 HLA-A chr6:29911320 5'GT 29911320 Upstream 37bp
chr6 29911951 29911951 1 + C T rs1059570 29911960 + 29911940 29911980 41 CATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCC CATGAGGCCACTCTGAGGTGCTGGGCCCTGGGCTTCTACCC < 41bp 1 0.663942523189825 1 0.432735025882721 experiment 0.672114953620349 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911960 chr6:29911951 synonymous SNV . 0 12 hm5C_associated_SNPs_6738 0 0 0 0 1 HLA-A chr6:29911899 3'AG 29911899 Downstream 53bp
chr6 29911957 29911957 1 + G A rs12721755 29911960 + 29911940 29911980 41 CATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCC CATGAGGCCACCCTGAGATGCTGGGCCCTGGGCTTCTACCC < 41bp 1 0.768972697383308 1 0.620372474193573 experiment 0.462054605233385 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911960 chr6:29911957 synonymous SNV . 0 18 hm5C_associated_SNPs_6739 0 0 0 0 1 HLA-A chr6:29911899 3'AG 29911899 Downstream 59bp
chr6 29976024 29976024 1 + C G rs3765604 29976025 + 29976005 29976045 41 ACATGAGGCATAACGAGGTCCTGGGTTCTGGGCTTCTACCC ACATGAGGCATAACGAGGTGCTGGGTTCTGGGCTTCTACCC < 41bp 1 0.536282241365347 1 0.554655611515045 experiment 0.927435517269306 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HLA-J ENSG00000204622 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:29976025 chr6:29976024 . . 0 20 hm5C_associated_SNPs_6744 0 0 0 0 1 HLA-J chr6:29975966 3'AG 29975966 Downstream 59bp
chr6 30312925 30312925 1 + G A rs568739145 30312944 + 30312924 30312964 41 CGGGAGGCCCTGGAGCGCGGCGGTGATGGCGGGGCCGGTGA CAGGAGGCCCTGGAGCGCGGCGGTGATGGCGGGGCCGGTGA < 41bp 1 0.529352398118452 1 0.450176328420639 experiment 0.941295203763095 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPP21 ENSG00000241370 UTR5 Human protein_coding chr6:30312944 chr6:30312925 . . 0 2 hm5C_associated_SNPs_6745 0 0 0 0 1 RPP21 chr6:30313005 5'GT 30313005 Upstream 81bp
chr6 30312945 30312945 1 + G A rs371403510 30312944 + 30312924 30312964 41 CGGGAGGCCCTGGAGCGCGGCGGTGATGGCGGGGCCGGTGA CGGGAGGCCCTGGAGCGCGGCAGTGATGGCGGGGCCGGTGA < 41bp 1 0.49803942007219 1 0.188311874866486 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPP21 ENSG00000241370 UTR5 Human protein_coding chr6:30312944 chr6:30312945 . . 0 22 hm5C_associated_SNPs_6746 0 0 1 0 1 RPP21 chr6:30313005 5'GT 30313005 Upstream 61bp
chr6 30312958 30312958 1 + C T rs199499005 30312944 + 30312924 30312964 41 CGGGAGGCCCTGGAGCGCGGCGGTGATGGCGGGGCCGGTGA CGGGAGGCCCTGGAGCGCGGCGGTGATGGCGGGGTCGGTGA < 41bp 1 0.532406958541922 1 0.419242382049561 experiment 0.935186082916156 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPP21 ENSG00000241370 CDS Human protein_coding chr6:30312944 chr6:30312958 nonsynonymous SNV 0.879 0 35 hm5C_associated_SNPs_6747 0 0 1 0 1 RPP21 chr6:30313005 5'GT 30313005 Upstream 48bp
chr6 30312962 30312962 1 + T G rs201417696 30312944 + 30312924 30312964 41 CGGGAGGCCCTGGAGCGCGGCGGTGATGGCGGGGCCGGTGA CGGGAGGCCCTGGAGCGCGGCGGTGATGGCGGGGCCGGGGA < 41bp 1 0.538166512958456 1 0.471979886293411 experiment 0.923666974083088 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPP21 ENSG00000241370 CDS Human protein_coding chr6:30312944 chr6:30312962 nonsynonymous SNV 0.962 4 39 hm5C_associated_SNPs_6748 0 0 1 0 1 RPP21 chr6:30313005 5'GT 30313005 Upstream 44bp
chr6 30545627 30545627 1 + G A rs547655254 30545611 + 30545591 30545631 41 ATAGTTCTTTGAAGAGCTGGCAGTAGAAGATAAACAGGCTG ATAGTTCTTTGAAGAGCTGGCAGTAGAAGATAAACAAGCTG < 41bp 1 0.271920585774052 1 0.318334102630615 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30545611 chr6:30545627 synonymous SNV . 0 37 hm5C_associated_SNPs_6749 0 0 1 0 2 ABCF1 chr6:30545595 3'AG 30545595 Downstream 33bp
chr6 30545627 30545627 1 + G A rs547655254 30545611 + 30545591 30545631 41 ATAGTTCTTTGAAGAGCTGGCAGTAGAAGATAAACAGGCTG ATAGTTCTTTGAAGAGCTGGCAGTAGAAGATAAACAAGCTG < 41bp 1 0.271920585774052 1 0.318334102630615 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30545611 chr6:30545627 synonymous SNV . 0 37 hm5C_associated_SNPs_6749 0 0 1 0 2 ABCF1 chr6:30545690 5'GT 30545690 Upstream 64bp
chr6 30545879 30545879 1 + A G rs113473909 30545872 + 30545852 30545892 41 GCAAAAAAAAAAGCGAGATACCCGAAAAGGCAGGCGGAAGA GCAAAAAAAAAAGCGAGATACCCGAAAGGGCAGGCGGAAGA < 41bp 1 0.469541288668334 1 0.401990920305252 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30545872 chr6:30545879 synonymous SNV . 0 28 hm5C_associated_SNPs_6750 0 0 1 0 2 ABCF1 chr6:30545850 3'AG 30545850 Downstream 30bp
chr6 30545879 30545879 1 + A G rs113473909 30545872 + 30545852 30545892 41 GCAAAAAAAAAAGCGAGATACCCGAAAAGGCAGGCGGAAGA GCAAAAAAAAAAGCGAGATACCCGAAAGGGCAGGCGGAAGA < 41bp 1 0.469541288668334 1 0.401990920305252 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30545872 chr6:30545879 synonymous SNV . 0 28 hm5C_associated_SNPs_6750 0 0 1 0 2 ABCF1 chr6:30545853 3'AG 30545853 Downstream 27bp
chr6 30545879 30545879 1 + A G rs113473909 30545886 + 30545866 30545906 41 GAGATACCCGAAAAGGCAGGCGGAAGAAGGATGTGGATGAT GAGATACCCGAAAGGGCAGGCGGAAGAAGGATGTGGATGAT < 41bp 1 0.552008577766439 1 0.855071604251862 experiment 0.895982844467122 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30545886 chr6:30545879 synonymous SNV . 0 14 hm5C_associated_SNPs_6751 0 0 1 0 2 ABCF1 chr6:30545850 3'AG 30545850 Downstream 30bp
chr6 30545879 30545879 1 + A G rs113473909 30545886 + 30545866 30545906 41 GAGATACCCGAAAAGGCAGGCGGAAGAAGGATGTGGATGAT GAGATACCCGAAAGGGCAGGCGGAAGAAGGATGTGGATGAT < 41bp 1 0.552008577766439 1 0.855071604251862 experiment 0.895982844467122 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30545886 chr6:30545879 synonymous SNV . 0 14 hm5C_associated_SNPs_6751 0 0 1 0 2 ABCF1 chr6:30545853 3'AG 30545853 Downstream 27bp
chr6 30608358 30608358 1 + T C rs144917944 30608360 + 30608340 30608380 41 TCGACACTCTCGTGCTGCTGCAGTCGATCCCACGCCCGCTG TCGACACTCTCGTGCTGCCGCAGTCGATCCCACGCCCGCTG < 41bp 1 0.227794682915665 1 0.76649671792984 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATAT1 ENSG00000137343 CDS Human protein_coding chr6:30608360 chr6:30608358 synonymous SNV . 0 19 hm5C_associated_SNPs_6755 0 0 0 0 2 ATAT1 chr6:30608312 3'AG 30608312 Downstream 47bp
chr6 30608358 30608358 1 + T C rs144917944 30608360 + 30608340 30608380 41 TCGACACTCTCGTGCTGCTGCAGTCGATCCCACGCCCGCTG TCGACACTCTCGTGCTGCCGCAGTCGATCCCACGCCCGCTG < 41bp 1 0.227794682915665 1 0.76649671792984 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATAT1 ENSG00000137343 CDS Human protein_coding chr6:30608360 chr6:30608358 synonymous SNV . 0 19 hm5C_associated_SNPs_6755 0 0 0 0 2 ATAT1 chr6:30608380 5'GT 30608380 Upstream 23bp
chr6 30689665 30689665 1 + G A rs187119487 30689671 + 30689651 30689691 41 TTAAAATGGGAGATGTGGGGCCGAGGTGGGCGAATTGGGAT TTAAAATGGGAGATATGGGGCCGAGGTGGGCGAATTGGGAT < 41bp 1 0.275960128265109 1 0.444751381874084 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TUBB ENSG00000196230 UTR5 Human protein_coding chr6:30689671 chr6:30689665 . . 0 15 hm5C_associated_SNPs_6756 0 0 1 0 1 TUBB chr6:30689675 5'GT 30689675 Upstream 11bp
chr6 30689665 30689665 1 + G A rs187119487 30689672 + 30689652 30689692 41 TAAAATGGGAGATGTGGGGCCGAGGTGGGCGAATTGGGATC TAAAATGGGAGATATGGGGCCGAGGTGGGCGAATTGGGATC < 41bp 1 0.511225473577626 1 0.767280876636505 experiment 0.977549052844748 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TUBB ENSG00000196230 UTR5 Human protein_coding chr6:30689672 chr6:30689665 . . 0 14 hm5C_associated_SNPs_6757 0 0 1 0 1 TUBB chr6:30689675 5'GT 30689675 Upstream 11bp
chr6 30857003 30857003 1 + G A rs146275209 30857005 + 30856985 30857025 41 GAGCAGTGACGGGGATGGGGCCTGGTGCCCCGCAGGGTCGG GAGCAGTGACGGGGATGGAGCCTGGTGCCCCGCAGGGTCGG < 41bp 1 0.347053305067927 1 0.421445935964584 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDR1 ENSG00000204580 CDS Human protein_coding chr6:30857005 chr6:30857003 synonymous SNV . 0 19 hm5C_associated_SNPs_6758 0 0 1 0 1 DDR1 chr6:30856979 3'AG 30856979 Downstream 25bp
chr6 30887988 30887988 1 + C T rs2249459 30887972 + 30887952 30887992 41 GAGGATGGGACCATGACCTCCCTCTGCGGGGACTGGCTGCA GAGGATGGGACCATGACCTCCCTCTGCGGGGACTGGTTGCA < 41bp 1 0.101983021231408 1 0.286471366882324 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VARS2 ENSG00000137411 CDS Human protein_coding chr6:30887972 chr6:30887988 synonymous SNV . 0 37 hm5C_associated_SNPs_6759 1 0 1 0 1 VARS2 chr6:30887993 5'GT 30887993 Upstream 6bp
chr6 31126409 31126409 1 + G T rs17197101 31126398 + 31126378 31126418 41 TCTTGGCTGTCAAACAGATGCAGCAACGTCGGCTCCTGCCG TCTTGGCTGTCAAACAGATGCAGCAACGTCGTCTCCTGCCG < 41bp 1 0.664942496720064 1 0.347355872392654 experiment 0.670115006559871 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TCF19 ENSG00000137310 UTR5 Human protein_coding chr6:31126398 chr6:31126409 . . 0 32 hm5C_associated_SNPs_6760 0 0 1 0 1 TCF19 chr6:31126499 5'GT 31126499 Upstream 91bp
chr6 31378864 31378864 1 + A G rs41558312 31378860 + 31378840 31378880 41 TGGGGGCAGGCTTGCATTCCCTCCAGGAGATTAGGGTCTGT TGGGGGCAGGCTTGCATTCCCTCCGGGAGATTAGGGTCTGT < 41bp 1 0.734186361614095 1 0.476136118173599 experiment 0.531627276771811 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MICA ENSG00000204520 CDS Human protein_coding chr6:31378860 chr6:31378864 nonsynonymous SNV 0.032 1 25 hm5C_associated_SNPs_6763 0 0 1 0 1 MICA chr6:31378849 3'AG 31378849 Downstream 16bp
chr6 31593369 31593369 1 + G A rs114452424 31593350 + 31593330 31593370 41 GGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGC GGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCAC < 41bp 1 0.566185942779908 1 0.336709380149841 experiment 0.867628114440183 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593350 chr6:31593369 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_6766 0 0 1 1 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 20bp
chr6 31593369 31593369 1 + G A rs114452424 31593351 + 31593331 31593371 41 GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCG GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCACG < 41bp 1 0.36544533776436 1 0.109040707349777 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593351 chr6:31593369 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_6767 0 0 1 1 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 20bp
chr6 31593369 31593369 1 + G A rs114452424 31593352 + 31593332 31593372 41 CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGG CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCACGG < 41bp 1 0.355539559469808 1 0.118464022874832 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593352 chr6:31593369 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_6768 0 0 1 1 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 20bp
chr6 31593369 31593369 1 + G A rs114452424 31593353 + 31593333 31593373 41 TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGGA TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCACGGA < 41bp 1 0.288302461282662 1 0.393140733242035 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593353 chr6:31593369 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_6769 0 0 1 1 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 20bp
chr6 31593369 31593369 1 + G A rs114452424 31593388 + 31593368 31593408 41 CGCGGAATGATGCCGCCTTTCGTGAGTCTTGGTGTCTTGTC CACGGAATGATGCCGCCTTTCGTGAGTCTTGGTGTCTTGTC < 41bp 1 0.645230880408024 1 0.700056076049805 experiment 0.709538239183951 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593388 chr6:31593369 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_6770 0 0 1 1 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 20bp
chr6 31595926 31595926 1 + C A rs45544132 31595942 + 31595922 31595962 41 TACTCCTACTCCAGGTGTGGCTGCGGCTCCCACTCTGGTGA TACTACTACTCCAGGTGTGGCTGCGGCTCCCACTCTGGTGA < 41bp 1 0.593479459865421 1 0.189402759075165 experiment 0.813041080269158 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31595942 chr6:31595926 nonsynonymous SNV 0.145 2 5 hm5C_associated_SNPs_6771 0 0 1 0 1 PRRC2A chr6:31596016 5'GT 31596016 Upstream 91bp
chr6 31602074 31602074 1 + C G rs144034863 31602058 + 31602038 31602078 41 CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAG CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCGTCAG < 41bp 1 0.487560972242175 1 0.271087348461151 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602058 chr6:31602074 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_6774 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 62bp
chr6 31602074 31602074 1 + C G rs144034863 31602058 + 31602038 31602078 41 CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAG CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCGTCAG < 41bp 1 0.487560972242175 1 0.271087348461151 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602058 chr6:31602074 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_6774 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 69bp
chr6 31602074 31602074 1 + C G rs144034863 31602059 + 31602039 31602079 41 TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGG TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCGTCAGG < 41bp 1 0.502746048765683 1 0.749370098114014 experiment 0.994507902468634 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602059 chr6:31602074 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_6775 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 62bp
chr6 31602074 31602074 1 + C G rs144034863 31602059 + 31602039 31602079 41 TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGG TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCGTCAGG < 41bp 1 0.502746048765683 1 0.749370098114014 experiment 0.994507902468634 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602059 chr6:31602074 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_6775 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 69bp
chr6 31602074 31602074 1 + C G rs144034863 31602066 + 31602046 31602086 41 TTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTC TTGGGCTCTAAGCCTGAGGGCCCAGGCCGTCAGGCAGAGTC < 41bp 1 0.260223299812578 1 0.354826688766479 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602066 chr6:31602074 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_6776 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 62bp
chr6 31602074 31602074 1 + C G rs144034863 31602066 + 31602046 31602086 41 TTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTC TTGGGCTCTAAGCCTGAGGGCCCAGGCCGTCAGGCAGAGTC < 41bp 1 0.260223299812578 1 0.354826688766479 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602066 chr6:31602074 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_6776 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 69bp
chr6 31602074 31602074 1 + C G rs144034863 31602072 + 31602052 31602092 41 TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGA TCTAAGCCTGAGGGCCCAGGCCGTCAGGCAGAGTCCAGAGA < 41bp 1 0.186705528870094 1 0.0706175863742828 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602072 chr6:31602074 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_6777 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 62bp
chr6 31602074 31602074 1 + C G rs144034863 31602072 + 31602052 31602092 41 TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGA TCTAAGCCTGAGGGCCCAGGCCGTCAGGCAGAGTCCAGAGA < 41bp 1 0.186705528870094 1 0.0706175863742828 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602072 chr6:31602074 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_6777 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 69bp
chr6 31602074 31602074 1 + C G rs144034863 31602073 + 31602053 31602093 41 CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGAT CTAAGCCTGAGGGCCCAGGCCGTCAGGCAGAGTCCAGAGAT < 41bp 1 0.469138554883354 1 0.22318822145462 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602073 chr6:31602074 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_6778 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 62bp
chr6 31602074 31602074 1 + C G rs144034863 31602073 + 31602053 31602093 41 CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGAT CTAAGCCTGAGGGCCCAGGCCGTCAGGCAGAGTCCAGAGAT < 41bp 1 0.469138554883354 1 0.22318822145462 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602073 chr6:31602074 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_6778 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 69bp
chr6 31602074 31602074 1 + C G rs144034863 31602076 + 31602056 31602096 41 AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACA AGCCTGAGGGCCCAGGCCGTCAGGCAGAGTCCAGAGATACA < 41bp 1 0.409082310227153 1 0.772096991539001 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602076 chr6:31602074 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_6779 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 62bp
chr6 31602074 31602074 1 + C G rs144034863 31602076 + 31602056 31602096 41 AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACA AGCCTGAGGGCCCAGGCCGTCAGGCAGAGTCCAGAGATACA < 41bp 1 0.409082310227153 1 0.772096991539001 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602076 chr6:31602074 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_6779 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 69bp
chr6 31602074 31602074 1 + C G rs144034863 31602080 + 31602060 31602100 41 TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCA TGAGGGCCCAGGCCGTCAGGCAGAGTCCAGAGATACAGGCA < 41bp 1 0.425746639225377 1 0.774823069572449 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602080 chr6:31602074 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_6780 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 62bp
chr6 31602074 31602074 1 + C G rs144034863 31602080 + 31602060 31602100 41 TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCA TGAGGGCCCAGGCCGTCAGGCAGAGTCCAGAGATACAGGCA < 41bp 1 0.425746639225377 1 0.774823069572449 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602080 chr6:31602074 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_6780 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 69bp
chr6 31602077 31602077 1 + A G rs560980870 31602058 + 31602038 31602078 41 CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAG CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCGG < 41bp 1 0.503680517065197 1 0.419857740402222 experiment 0.992638965869605 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602058 chr6:31602077 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_6781 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 65bp
chr6 31602077 31602077 1 + A G rs560980870 31602058 + 31602038 31602078 41 CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAG CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCGG < 41bp 1 0.503680517065197 1 0.419857740402222 experiment 0.992638965869605 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602058 chr6:31602077 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_6781 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 66bp
chr6 31602077 31602077 1 + A G rs560980870 31602059 + 31602039 31602079 41 TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGG TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCGGG < 41bp 1 0.533494671061731 1 0.875336587429047 experiment 0.933010657876538 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602059 chr6:31602077 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_6782 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 65bp
chr6 31602077 31602077 1 + A G rs560980870 31602059 + 31602039 31602079 41 TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGG TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCGGG < 41bp 1 0.533494671061731 1 0.875336587429047 experiment 0.933010657876538 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602059 chr6:31602077 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_6782 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 66bp
chr6 31602077 31602077 1 + A G rs560980870 31602066 + 31602046 31602086 41 TTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTC TTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCGGGCAGAGTC < 41bp 1 0.247144381946531 1 0.338803112506866 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602066 chr6:31602077 nonsynonymous SNV 1.000 0 32 hm5C_associated_SNPs_6783 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 65bp
chr6 31602077 31602077 1 + A G rs560980870 31602066 + 31602046 31602086 41 TTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTC TTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCGGGCAGAGTC < 41bp 1 0.247144381946531 1 0.338803112506866 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602066 chr6:31602077 nonsynonymous SNV 1.000 0 32 hm5C_associated_SNPs_6783 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 66bp
chr6 31602077 31602077 1 + A G rs560980870 31602072 + 31602052 31602092 41 TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGA TCTAAGCCTGAGGGCCCAGGCCCTCGGGCAGAGTCCAGAGA < 41bp 1 0.181829434868169 1 0.107433527708054 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602072 chr6:31602077 nonsynonymous SNV 1.000 0 26 hm5C_associated_SNPs_6784 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 65bp
chr6 31602077 31602077 1 + A G rs560980870 31602072 + 31602052 31602092 41 TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGA TCTAAGCCTGAGGGCCCAGGCCCTCGGGCAGAGTCCAGAGA < 41bp 1 0.181829434868169 1 0.107433527708054 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602072 chr6:31602077 nonsynonymous SNV 1.000 0 26 hm5C_associated_SNPs_6784 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 66bp
chr6 31602077 31602077 1 + A G rs560980870 31602073 + 31602053 31602093 41 CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGAT CTAAGCCTGAGGGCCCAGGCCCTCGGGCAGAGTCCAGAGAT < 41bp 1 0.255720665207578 1 0.17361968755722 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602073 chr6:31602077 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_6785 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 65bp
chr6 31602077 31602077 1 + A G rs560980870 31602073 + 31602053 31602093 41 CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGAT CTAAGCCTGAGGGCCCAGGCCCTCGGGCAGAGTCCAGAGAT < 41bp 1 0.255720665207578 1 0.17361968755722 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602073 chr6:31602077 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_6785 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 66bp
chr6 31602077 31602077 1 + A G rs560980870 31602074 + 31602054 31602094 41 TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATA TAAGCCTGAGGGCCCAGGCCCTCGGGCAGAGTCCAGAGATA < 41bp 1 0.500283979152215 1 0.668254315853119 experiment 0.999432041695571 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602074 chr6:31602077 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_6786 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 65bp
chr6 31602077 31602077 1 + A G rs560980870 31602074 + 31602054 31602094 41 TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATA TAAGCCTGAGGGCCCAGGCCCTCGGGCAGAGTCCAGAGATA < 41bp 1 0.500283979152215 1 0.668254315853119 experiment 0.999432041695571 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602074 chr6:31602077 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_6786 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 66bp
chr6 31602077 31602077 1 + A G rs560980870 31602076 + 31602056 31602096 41 AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACA AGCCTGAGGGCCCAGGCCCTCGGGCAGAGTCCAGAGATACA < 41bp 1 0.47147156591656 1 0.865618705749512 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602076 chr6:31602077 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_6787 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 65bp
chr6 31602077 31602077 1 + A G rs560980870 31602076 + 31602056 31602096 41 AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACA AGCCTGAGGGCCCAGGCCCTCGGGCAGAGTCCAGAGATACA < 41bp 1 0.47147156591656 1 0.865618705749512 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602076 chr6:31602077 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_6787 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 66bp
chr6 31602077 31602077 1 + A G rs560980870 31602080 + 31602060 31602100 41 TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCA TGAGGGCCCAGGCCCTCGGGCAGAGTCCAGAGATACAGGCA < 41bp 1 0.362197380869522 1 0.585389614105225 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602080 chr6:31602077 nonsynonymous SNV 1.000 0 18 hm5C_associated_SNPs_6788 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 65bp
chr6 31602077 31602077 1 + A G rs560980870 31602080 + 31602060 31602100 41 TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCA TGAGGGCCCAGGCCCTCGGGCAGAGTCCAGAGATACAGGCA < 41bp 1 0.362197380869522 1 0.585389614105225 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602080 chr6:31602077 nonsynonymous SNV 1.000 0 18 hm5C_associated_SNPs_6788 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 66bp
chr6 31604591 31604591 1 + C T rs10885 31604592 + 31604572 31604612 41 ACCACCTCCTGCCCCACCTCCCCTTTCTCTGTTACCTGTGG ACCACCTCCTGCCCCACCTTCCCTTTCTCTGTTACCTGTGG < 41bp 1 0.199365589617831 1 0.138335734605789 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31604592 chr6:31604591 nonsynonymous SNV 0.983 3 20 hm5C_associated_SNPs_6789 0 0 1 0 1 PRRC2A chr6:31604510 3'AG 31604510 Downstream 82bp
chr6 31604591 31604591 1 + C T rs10885 31604607 + 31604587 31604627 41 ACCTCCCCTTTCTCTGTTACCTGTGGGCCCTGCTCTGCAGC ACCTTCCCTTTCTCTGTTACCTGTGGGCCCTGCTCTGCAGC < 41bp 1 0.635752429638931 1 0.22372442483902 experiment 0.728495140722139 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31604607 chr6:31604591 nonsynonymous SNV 0.983 3 5 hm5C_associated_SNPs_6790 0 0 1 0 1 PRRC2A chr6:31604510 3'AG 31604510 Downstream 82bp
chr6 31605016 31605016 1 + T C rs35595439 31605013 + 31604993 31605033 41 ACGCCCTTCTTCCCTTAGGTCCTTCTCTGGCCTCAATTCCC ACGCCCTTCTTCCCTTAGGTCCTCCTCTGGCCTCAATTCCC < 41bp 1 0.12812369491945 1 0.0689878463745117 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31605013 chr6:31605016 nonsynonymous SNV 0.984 2 24 hm5C_associated_SNPs_6791 0 0 1 0 2 PRRC2A chr6:31605011 3'AG 31605011 Downstream 6bp
chr6 31605016 31605016 1 + T C rs35595439 31605013 + 31604993 31605033 41 ACGCCCTTCTTCCCTTAGGTCCTTCTCTGGCCTCAATTCCC ACGCCCTTCTTCCCTTAGGTCCTCCTCTGGCCTCAATTCCC < 41bp 1 0.12812369491945 1 0.0689878463745117 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31605013 chr6:31605016 nonsynonymous SNV 0.984 2 24 hm5C_associated_SNPs_6791 0 0 1 0 2 PRRC2A chr6:31605101 5'GT 31605101 Upstream 86bp
chr6 31633895 31633895 1 + C T rs568868694 31633885 + 31633865 31633905 41 CTCCCCCCACCCCACTTCGCCTGCCGCGGTCGGGTCCGCGG CTCCCCCCACCCCACTTCGCCTGCCGCGGTTGGGTCCGCGG < 41bp 1 0.407285103501654 1 0.116781622171402 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CSNK2B;GPANK1 ENSG00000204435;ENSG00000204438;ENSG00000263020 UTR5 Human other chr6:31633885 chr6:31633895 . . 0 31 hm5C_associated_SNPs_6792 0 0 1 0 1 CSNK2B;GPANK1 chr6:31633985 5'GT 31633985 Upstream 91bp
chr6 31633895 31633895 1 + C T rs568868694 31633891 + 31633871 31633911 41 CCACCCCACTTCGCCTGCCGCGGTCGGGTCCGCGGCCTGCG CCACCCCACTTCGCCTGCCGCGGTTGGGTCCGCGGCCTGCG < 41bp 1 0.484241902355127 1 0.220014065504074 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CSNK2B;GPANK1 ENSG00000204435;ENSG00000204438;ENSG00000263020 UTR5 Human other chr6:31633891 chr6:31633895 . . 0 25 hm5C_associated_SNPs_6793 0 0 1 0 1 CSNK2B;GPANK1 chr6:31633985 5'GT 31633985 Upstream 91bp
chr6 31637190 31637190 1 + G A rs143237802 31637187 + 31637167 31637207 41 AAGTCATCAAGACACCATCACACGGATGGCGCCTACTTCGG AAGTCATCAAGACACCATCACACAGATGGCGCCTACTTCGG < 41bp 1 0.591357582568758 1 0.0221534669399261 experiment 0.817284834862484 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CSNK2B ENSG00000204435;ENSG00000263020 CDS Human other chr6:31637187 chr6:31637190 synonymous SNV . 0 24 hm5C_associated_SNPs_6794 0 0 1 0 2 CSNK2B chr6:31637096 3'AG 31637096 Downstream 95bp
chr6 31637190 31637190 1 + G A rs143237802 31637187 + 31637167 31637207 41 AAGTCATCAAGACACCATCACACGGATGGCGCCTACTTCGG AAGTCATCAAGACACCATCACACAGATGGCGCCTACTTCGG < 41bp 1 0.591357582568758 1 0.0221534669399261 experiment 0.817284834862484 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CSNK2B ENSG00000204435;ENSG00000263020 CDS Human other chr6:31637187 chr6:31637190 synonymous SNV . 0 24 hm5C_associated_SNPs_6794 0 0 1 0 2 CSNK2B chr6:31637285 5'GT 31637285 Upstream 96bp
chr6 31638970 31638970 1 + C G rs141943810 31638959 + 31638939 31638979 41 TTCCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAAGAC TTCCCGACATCCGGACGTGCCACTTCTGCCTGGTAGAAGAC < 41bp 1 0.340212933002915 1 0.0574301481246948 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LY6G5B ENSG00000240053;ENSG00000263020 CDS Human other chr6:31638959 chr6:31638970 nonsynonymous SNV 0.424 0 32 hm5C_associated_SNPs_6795 0 0 1 0 2 LY6G5B chr6:31638933 3'AG 31638933 Downstream 38bp
chr6 31638970 31638970 1 + C G rs141943810 31638959 + 31638939 31638979 41 TTCCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAAGAC TTCCCGACATCCGGACGTGCCACTTCTGCCTGGTAGAAGAC < 41bp 1 0.340212933002915 1 0.0574301481246948 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LY6G5B ENSG00000240053;ENSG00000263020 CDS Human other chr6:31638959 chr6:31638970 nonsynonymous SNV 0.424 0 32 hm5C_associated_SNPs_6795 0 0 1 0 2 LY6G5B chr6:31639061 5'GT 31639061 Upstream 92bp
chr6 31638970 31638970 1 + C G rs141943810 31638961 + 31638941 31638981 41 CCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAAGACCC CCCGACATCCGGACGTGCCACTTCTGCCTGGTAGAAGACCC < 41bp 1 0.334872711651821 1 0.0467779934406281 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LY6G5B ENSG00000240053;ENSG00000263020 CDS Human other chr6:31638961 chr6:31638970 nonsynonymous SNV 0.424 0 30 hm5C_associated_SNPs_6796 0 0 1 0 2 LY6G5B chr6:31638933 3'AG 31638933 Downstream 38bp
chr6 31638970 31638970 1 + C G rs141943810 31638961 + 31638941 31638981 41 CCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAAGACCC CCCGACATCCGGACGTGCCACTTCTGCCTGGTAGAAGACCC < 41bp 1 0.334872711651821 1 0.0467779934406281 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LY6G5B ENSG00000240053;ENSG00000263020 CDS Human other chr6:31638961 chr6:31638970 nonsynonymous SNV 0.424 0 30 hm5C_associated_SNPs_6796 0 0 1 0 2 LY6G5B chr6:31639061 5'GT 31639061 Upstream 92bp
chr6 31707829 31707829 1 + T C rs28381345 31707823 + 31707803 31707843 41 CGGTCAGCGGGGCGTTCTCCCACCTGTAGCGACTCAGGTTA CGGTCAGCGGGGCGTTCTCCCACCTGCAGCGACTCAGGTTA < 41bp 1 0.391067804456634 1 0.144110321998596 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MSH5-SAPCD1 ENSG00000204410;ENSG00000255152 UTR5 Human other chr6:31707823 chr6:31707829 . . 0 27 hm5C_associated_SNPs_6797 0 0 1 0 1 MSH5-SAPCD1 chr6:31707839 5'GT 31707839 Upstream 11bp
chr6 31708305 31708305 1 + C T rs200570010 31708322 + 31708302 31708342 41 CCTCCTCCGGCTTCCCCAGCCCGGCCCCAGTGCCGGGCCCC CCTTCTCCGGCTTCCCCAGCCCGGCCCCAGTGCCGGGCCCC < 41bp 1 0.288140672967693 1 0.614670157432556 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MSH5 ENSG00000204410;ENSG00000255152 CDS Human other chr6:31708322 chr6:31708305 nonsynonymous SNV 0.000 1 4 hm5C_associated_SNPs_6798 0 0 1 0 2 MSH5-SAPCD1 chr6:31708231 3'AG 31708231 Downstream 75bp
chr6 31708305 31708305 1 + C T rs200570010 31708322 + 31708302 31708342 41 CCTCCTCCGGCTTCCCCAGCCCGGCCCCAGTGCCGGGCCCC CCTTCTCCGGCTTCCCCAGCCCGGCCCCAGTGCCGGGCCCC < 41bp 1 0.288140672967693 1 0.614670157432556 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MSH5 ENSG00000204410;ENSG00000255152 CDS Human other chr6:31708322 chr6:31708305 nonsynonymous SNV 0.000 1 4 hm5C_associated_SNPs_6798 0 0 1 0 2 MSH5 chr6:31708390 5'GT 31708390 Upstream 86bp
chr6 31708328 31708328 1 + C T rs2075789 31708322 + 31708302 31708342 41 CCTCCTCCGGCTTCCCCAGCCCGGCCCCAGTGCCGGGCCCC CCTCCTCCGGCTTCCCCAGCCCGGCCTCAGTGCCGGGCCCC < 41bp 1 0.317183438202707 1 0.678473055362701 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MSH5 ENSG00000204410;ENSG00000255152 CDS Human other chr6:31708322 chr6:31708328 nonsynonymous SNV 0.006 1 27 hm5C_associated_SNPs_6799 1 0 1 0 2 MSH5-SAPCD1 chr6:31708231 3'AG 31708231 Downstream 98bp
chr6 31708328 31708328 1 + C T rs2075789 31708322 + 31708302 31708342 41 CCTCCTCCGGCTTCCCCAGCCCGGCCCCAGTGCCGGGCCCC CCTCCTCCGGCTTCCCCAGCCCGGCCTCAGTGCCGGGCCCC < 41bp 1 0.317183438202707 1 0.678473055362701 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MSH5 ENSG00000204410;ENSG00000255152 CDS Human other chr6:31708322 chr6:31708328 nonsynonymous SNV 0.006 1 27 hm5C_associated_SNPs_6799 1 0 1 0 2 MSH5 chr6:31708390 5'GT 31708390 Upstream 63bp
chr6 31912773 31912773 1 + A G rs45507391 31912772 + 31912752 31912792 41 GGCAGGAGAATCTGGGGGAGCAGTTTTCCTTGAGCGGAGAT GGCAGGAGAATCTGGGGGAGCGGTTTTCCTTGAGCGGAGAT < 41bp 1 0.199837208117081 1 0.327765703201294 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C2 ENSG00000166278 CDS Human protein_coding chr6:31912772 chr6:31912773 synonymous SNV . 0 22 hm5C_associated_SNPs_6821 3 0 1 0 2 C2 chr6:31912757 3'AG 31912757 Downstream 17bp
chr6 31912773 31912773 1 + A G rs45507391 31912772 + 31912752 31912792 41 GGCAGGAGAATCTGGGGGAGCAGTTTTCCTTGAGCGGAGAT GGCAGGAGAATCTGGGGGAGCGGTTTTCCTTGAGCGGAGAT < 41bp 1 0.199837208117081 1 0.327765703201294 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C2 ENSG00000166278 CDS Human protein_coding chr6:31912772 chr6:31912773 synonymous SNV . 0 22 hm5C_associated_SNPs_6821 3 0 1 0 2 C2 chr6:31912806 5'GT 31912806 Upstream 34bp
chr6 31914179 31914179 1 + C G rs12614 31914162 + 31914142 31914182 41 CTCTTCAGGTGTGACCACCACTCCATGGTCTTTGGCCCGGC CTCTTCAGGTGTGACCACCACTCCATGGTCTTTGGCCGGGC < 41bp 1 0.716226281409808 1 0.978486180305481 experiment 0.567547437180383 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control CFB ENSG00000243649;ENSG00000244255 CDS Human other chr6:31914162 chr6:31914179 nonsynonymous SNV 0.000 0 38 hm5C_associated_SNPs_6822 0 1 1 0 1 CFB chr6:31914150 3'AG 31914150 Downstream 30bp
chr6 31914180 31914180 1 + G A rs641153 31914162 + 31914142 31914182 41 CTCTTCAGGTGTGACCACCACTCCATGGTCTTTGGCCCGGC CTCTTCAGGTGTGACCACCACTCCATGGTCTTTGGCCCAGC < 41bp 1 0.702867042757256 1 0.985603332519531 experiment 0.594265914485488 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control CFB ENSG00000243649;ENSG00000244255 CDS Human other chr6:31914162 chr6:31914180 nonsynonymous SNV 0.000 0 39 hm5C_associated_SNPs_6823 7 1 1 0 1 CFB chr6:31914150 3'AG 31914150 Downstream 31bp
chr6 31926721 31926721 1 - C G rs546698443 31926733 - 31926713 31926753 41 GCTACGTCATCGTTGTGAGCCCGCTATCAGCGGCCAGCGCG GCTACGTCATCGTTGTGAGCCCGCTATCAGCGCCCAGCGCG < 41bp 1 0.461854194536654 1 0.424241840839386 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NELFE;SKIV2L ENSG00000204356 UTR5 Human protein_coding chr6:31926733 chr6:31926721 . . 0 33 hm5C_associated_SNPs_6824 1 0 1 0 1 NELFE;SKIV2L chr6:31926669 5'GT 31926669 Upstream 53bp
chr6 31926977 31926977 1 + A C rs557492102 31926985 + 31926965 31927005 41 CCAGGATGATGGAGACAGAGCGACTTGGTGAGGGGGAGGGG CCAGGATGATGGCGACAGAGCGACTTGGTGAGGGGGAGGGG < 41bp 1 0.349265585822642 1 0.28298020362854 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31926985 chr6:31926977 nonsynonymous SNV 0.859 1 13 hm5C_associated_SNPs_6825 0 0 1 0 1 SKIV2L chr6:31926991 5'GT 31926991 Upstream 15bp
chr6 31928238 31928238 1 + T C rs3895064 31928230 + 31928210 31928250 41 TCTTGCTGGAGAACACAAATCTCTCGGCTACAACCTCCTTG TCTTGCTGGAGAACACAAATCTCTCGGCCACAACCTCCTTG < 41bp 1 0.365445051989728 1 0.103994101285934 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31928230 chr6:31928238 synonymous SNV . 0 29 hm5C_associated_SNPs_6826 1 0 0 0 2 SKIV2L chr6:31928209 3'AG 31928209 Downstream 30bp
chr6 31928238 31928238 1 + T C rs3895064 31928230 + 31928210 31928250 41 TCTTGCTGGAGAACACAAATCTCTCGGCTACAACCTCCTTG TCTTGCTGGAGAACACAAATCTCTCGGCCACAACCTCCTTG < 41bp 1 0.365445051989728 1 0.103994101285934 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31928230 chr6:31928238 synonymous SNV . 0 29 hm5C_associated_SNPs_6826 1 0 0 0 2 SKIV2L chr6:31928323 5'GT 31928323 Upstream 86bp
chr6 31929808 31929808 1 + C T rs35664695 31929807 + 31929787 31929827 41 TGTGGCTGAATATGCCATTGCCCTGGCCCAGAAACACATGA TGTGGCTGAATATGCCATTGCTCTGGCCCAGAAACACATGA < 41bp 1 0.341149938907973 1 0.217230796813965 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31929807 chr6:31929808 synonymous SNV . 0 22 hm5C_associated_SNPs_6827 1 1 0 0 1 SKIV2L chr6:31929831 5'GT 31929831 Upstream 24bp
chr6 31936126 31936126 1 + C A rs146035089 31936137 + 31936117 31936157 41 CCTTGCAGCCGTGACCACTGCTGTCCAGGAACTGCTGCGTC CCTTGCAGCAGTGACCACTGCTGTCCAGGAACTGCTGCGTC < 41bp 1 0.243294591593092 1 0.163146138191223 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31936137 chr6:31936126 synonymous SNV . 0 10 hm5C_associated_SNPs_6828 0 0 1 0 1 SKIV2L chr6:31936105 3'AG 31936105 Downstream 22bp
chr6 31936668 31936668 1 + T C rs410851 31936653 + 31936633 31936673 41 CCCTTTTTCTTGCAGGTGCTCCGAACCCTGGGTTATGTGGA CCCTTTTTCTTGCAGGTGCTCCGAACCCTGGGTTACGTGGA < 41bp 1 0.346458690556499 1 0.749715566635132 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31936653 chr6:31936668 synonymous SNV . 0 36 hm5C_associated_SNPs_6829 2 0 1 0 1 SKIV2L chr6:31936648 3'AG 31936648 Downstream 21bp
chr6 31964655 31964655 1 + G A rs5030681 31964669 + 31964649 31964689 41 CGTGTCGCCCACCCCGGCTCCTCGCAACCCATCCGACCCCA CGTGTCACCCACCCCGGCTCCTCGCAACCCATCCGACCCCA < 41bp 1 0.417832808987712 1 0.188887298107147 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C4A;C4B;C4B_2 ENSG00000244731 CDS Human protein_coding chr6:31964669 chr6:31964655 synonymous SNV . 0 7 hm5C_associated_SNPs_6830 0 0 0 0 1 C4A;C4B;C4B_2 chr6:31964606 3'AG 31964606 Downstream 50bp
chr6 31964663 31964663 1 + C T rs533662784 31964669 + 31964649 31964689 41 CGTGTCGCCCACCCCGGCTCCTCGCAACCCATCCGACCCCA CGTGTCGCCCACCCTGGCTCCTCGCAACCCATCCGACCCCA < 41bp 1 0.404701154042378 1 0.24610099196434 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C4A;C4B;C4B_2 ENSG00000244731 CDS Human protein_coding chr6:31964669 chr6:31964663 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_6831 0 0 0 0 1 C4A;C4B;C4B_2 chr6:31964606 3'AG 31964606 Downstream 58bp
chr6 32134295 32134295 1 + A C rs148110134 32134276 + 32134256 32134296 41 TCCTCTGGCATGGACGCAGTCAGGGAGTCTGCTCCAAGCAG TCCTCTGGCATGGACGCAGTCAGGGAGTCTGCTCCAAGCCG < 41bp 1 0.744080328914845 1 0.855937957763672 experiment 0.51183934217031 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134276 chr6:32134295 nonsynonymous SNV 0.960 1 40 hm5C_associated_SNPs_6832 0 0 1 2 1 EGFL8 chr6:32134275 3'AG 32134275 Downstream 21bp
chr6 32942264 32942264 1 + T C rs3752528 32942278 + 32942258 32942298 41 GCAGGGTTGCTGGGGCTGGGCCCAGAAGCAGCAGCACCAGG GCAGGGCTGCTGGGGCTGGGCCCAGAAGCAGCAGCACCAGG < 41bp 1 0.534085681558252 1 0.273379266262054 experiment 0.931828636883496 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32942278 chr6:32942264 synonymous SNV . 0 7 hm5C_associated_SNPs_6834 0 0 1 0 1 BRD2 chr6:32942239 3'AG 32942239 Downstream 26bp
chr6 32942277 32942277 1 + G A rs55650502 32942278 + 32942258 32942298 41 GCAGGGTTGCTGGGGCTGGGCCCAGAAGCAGCAGCACCAGG GCAGGGTTGCTGGGGCTGGACCCAGAAGCAGCAGCACCAGG < 41bp 1 0.532219897811247 1 0.322850465774536 experiment 0.935560204377506 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32942278 chr6:32942277 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_6835 0 0 1 0 1 BRD2 chr6:32942239 3'AG 32942239 Downstream 39bp
chr6 32946942 32946942 1 + C T rs539005700 32946948 + 32946928 32946968 41 AAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCCAGGATTA AAGCGATTCTCCTGTCTCAGCCTCCCAAGTAGCCAGGATTA < 41bp 1 0.0404448681572178 1 0.139284193515778 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32946948 chr6:32946942 synonymous SNV . 0 15 hm5C_associated_SNPs_6836 0 0 0 0 1 BRD2 chr6:32946867 3'AG 32946867 Downstream 76bp
chr6 32946964 32946964 1 + G A rs206778 32946948 + 32946928 32946968 41 AAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCCAGGATTA AAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCCAGAATTA < 41bp 1 0.0396255621024722 1 0.139070630073547 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32946948 chr6:32946964 nonsynonymous SNV 0.007 0 37 hm5C_associated_SNPs_6837 0 0 0 0 1 BRD2 chr6:32946867 3'AG 32946867 Downstream 98bp
chr6 33169571 33169571 1 + T C rs137873161 33169566 + 33169546 33169586 41 TCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCCCCGTGGA TCAGCAGCTCCATTTTTTGTCCTCTCCCTTATCCCCGTGGA < 41bp 1 0.115219186088107 1 0.0913550853729248 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33169566 chr6:33169571 nonsynonymous SNV 0.998 2 26 hm5C_associated_SNPs_6838 0 0 1 0 2 SLC39A7 chr6:33169522 3'AG 33169522 Downstream 50bp
chr6 33169571 33169571 1 + T C rs137873161 33169566 + 33169546 33169586 41 TCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCCCCGTGGA TCAGCAGCTCCATTTTTTGTCCTCTCCCTTATCCCCGTGGA < 41bp 1 0.115219186088107 1 0.0913550853729248 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33169566 chr6:33169571 nonsynonymous SNV 0.998 2 26 hm5C_associated_SNPs_6838 0 0 1 0 2 SLC39A7 chr6:33169538 3'AG 33169538 Downstream 34bp
chr6 33169581 33169581 1 + C G rs11538810 33169566 + 33169546 33169586 41 TCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCCCCGTGGA TCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCCCGGTGGA < 41bp 1 0.133614984667487 1 0.0355851948261261 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33169566 chr6:33169581 synonymous SNV . 0 36 hm5C_associated_SNPs_6839 0 0 1 0 2 SLC39A7 chr6:33169522 3'AG 33169522 Downstream 60bp
chr6 33169581 33169581 1 + C G rs11538810 33169566 + 33169546 33169586 41 TCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCCCCGTGGA TCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCCCGGTGGA < 41bp 1 0.133614984667487 1 0.0355851948261261 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33169566 chr6:33169581 synonymous SNV . 0 36 hm5C_associated_SNPs_6839 0 0 1 0 2 SLC39A7 chr6:33169538 3'AG 33169538 Downstream 44bp
chr6 33172442 33172442 1 + C A rs150495100 33172450 + 33172430 33172470 41 CCACCCACAGCCCGCCATGGCGTCTCAGCTCCAGAACCGAC CCACCCACAGCCAGCCATGGCGTCTCAGCTCCAGAACCGAC < 41bp 1 0.114683911170491 1 0.149989664554596 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSD17B8 ENSG00000204228 UTR5 Human protein_coding chr6:33172450 chr6:33172442 . . 0 13 hm5C_associated_SNPs_6841 0 0 0 0 1 HSD17B8 chr6:33172497 5'GT 33172497 Upstream 56bp
chr6 33239869 33239869 1 + C A rs17215231 33239873 + 33239853 33239893 41 TCTCTTCCACAGGAGGCCTACACGCCGCCGCTTGTGCTGCA TCTCTTCCACAGGAGGACTACACGCCGCCGCTTGTGCTGCA < 41bp 1 0.422434806988923 1 0.299492388963699 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS18 ENSG00000231500 UTR5 Human protein_coding chr6:33239873 chr6:33239869 . . 0 17 hm5C_associated_SNPs_6842 0 0 1 0 1 RPS18 chr6:33239899 5'GT 33239899 Upstream 31bp
chr6 33239892 33239892 1 + C T rs550306811 33239873 + 33239853 33239893 41 TCTCTTCCACAGGAGGCCTACACGCCGCCGCTTGTGCTGCA TCTCTTCCACAGGAGGCCTACACGCCGCCGCTTGTGCTGTA < 41bp 1 0.388694948181505 1 0.351282149553299 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS18 ENSG00000231500 UTR5 Human protein_coding chr6:33239873 chr6:33239892 . . 0 40 hm5C_associated_SNPs_6843 0 0 1 0 1 RPS18 chr6:33239899 5'GT 33239899 Upstream 8bp
chr6 33638138 33638138 1 + C A rs2229633 33638147 + 33638127 33638167 41 ATGTGCTTGGACCGCCAGTACTTGGCCATCGACGAGATCTC ATGTGCTTGGAACGCCAGTACTTGGCCATCGACGAGATCTC < 41bp 1 0.270942851545004 1 0.235840439796448 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33638147 chr6:33638138 nonsynonymous SNV 0.998 4 12 hm5C_associated_SNPs_6846 0 0 1 0 1 ITPR3 chr6:33638102 3'AG 33638102 Downstream 37bp
chr6 33656548 33656548 1 + C T rs142850920 33656530 + 33656510 33656550 41 AACATCATCATTGCCTTCTTCTACCCTTACATGGAGGGCGC AACATCATCATTGCCTTCTTCTACCCTTACATGGAGGGTGC < 41bp 1 0.108012614914791 1 0.227627515792847 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33656530 chr6:33656548 synonymous SNV . 0 39 hm5C_associated_SNPs_6847 0 0 1 0 1 ITPR3 chr6:33656558 5'GT 33656558 Upstream 11bp
chr6 35436183 35436183 1 + C T rs368308609 35436189 + 35436169 35436209 41 AGACATGCTAGTCTCTTTTCCGGTTAGCGCGGCGTGAGAAG AGACATGCTAGTCTTTTTTCCGGTTAGCGCGGCGTGAGAAG < 41bp 1 0.290182796508349 1 0.403675198554993 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10A ENSG00000198755 upstream Human protein_coding chr6:35436189 chr6:35436183 . . 0 15 hm5C_associated_SNPs_6859 0 0 1 0 1 RPL10A chr6:35436216 5'GT 35436216 Upstream 34bp
chr6 35436183 35436183 1 + C T rs368308609 35436198 + 35436178 35436218 41 AGTCTCTTTTCCGGTTAGCGCGGCGTGAGAAGCCATGAGGT AGTCTTTTTTCCGGTTAGCGCGGCGTGAGAAGCCATGAGGT < 41bp 1 0.700631328759972 1 0.905789017677307 experiment 0.598737342480056 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10A ENSG00000198755 upstream Human protein_coding chr6:35436198 chr6:35436183 . . 0 6 hm5C_associated_SNPs_6860 0 0 1 0 1 RPL10A chr6:35436216 5'GT 35436216 Upstream 34bp
chr6 35436183 35436183 1 + C T rs368308609 35436201 + 35436181 35436221 41 CTCTTTTCCGGTTAGCGCGGCGTGAGAAGCCATGAGGTGAG CTTTTTTCCGGTTAGCGCGGCGTGAGAAGCCATGAGGTGAG < 41bp 1 0.422065246100244 1 0.469292223453522 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10A ENSG00000198755 upstream Human protein_coding chr6:35436201 chr6:35436183 . . 0 3 hm5C_associated_SNPs_6861 0 0 1 0 1 RPL10A chr6:35436216 5'GT 35436216 Upstream 34bp
chr6 35436195 35436195 1 + G A rs41271257 35436189 + 35436169 35436209 41 AGACATGCTAGTCTCTTTTCCGGTTAGCGCGGCGTGAGAAG AGACATGCTAGTCTCTTTTCCGGTTAACGCGGCGTGAGAAG < 41bp 1 0.298844737930685 1 0.766702115535736 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10A ENSG00000198755 UTR5 Human protein_coding chr6:35436189 chr6:35436195 . . 0 27 hm5C_associated_SNPs_6862 0 0 1 0 1 RPL10A chr6:35436216 5'GT 35436216 Upstream 22bp
chr6 35436195 35436195 1 + G A rs41271257 35436198 + 35436178 35436218 41 AGTCTCTTTTCCGGTTAGCGCGGCGTGAGAAGCCATGAGGT AGTCTCTTTTCCGGTTAACGCGGCGTGAGAAGCCATGAGGT < 41bp 1 0.773037610707094 1 0.91005551815033 experiment 0.453924778585811 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10A ENSG00000198755 UTR5 Human protein_coding chr6:35436198 chr6:35436195 . . 0 18 hm5C_associated_SNPs_6863 0 0 1 0 1 RPL10A chr6:35436216 5'GT 35436216 Upstream 22bp
chr6 35436195 35436195 1 + G A rs41271257 35436201 + 35436181 35436221 41 CTCTTTTCCGGTTAGCGCGGCGTGAGAAGCCATGAGGTGAG CTCTTTTCCGGTTAACGCGGCGTGAGAAGCCATGAGGTGAG < 41bp 1 0.366694732062277 1 0.479546368122101 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10A ENSG00000198755 UTR5 Human protein_coding chr6:35436201 chr6:35436195 . . 0 15 hm5C_associated_SNPs_6864 0 0 1 0 1 RPL10A chr6:35436216 5'GT 35436216 Upstream 22bp
chr6 35436196 35436196 1 + C T rs373878090 35436189 + 35436169 35436209 41 AGACATGCTAGTCTCTTTTCCGGTTAGCGCGGCGTGAGAAG AGACATGCTAGTCTCTTTTCCGGTTAGTGCGGCGTGAGAAG < 41bp 1 0.274539557563713 1 0.624691963195801 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10A ENSG00000198755 UTR5 Human protein_coding chr6:35436189 chr6:35436196 . . 0 28 hm5C_associated_SNPs_6865 0 0 1 0 1 RPL10A chr6:35436216 5'GT 35436216 Upstream 21bp
chr6 35436196 35436196 1 + C T rs373878090 35436198 + 35436178 35436218 41 AGTCTCTTTTCCGGTTAGCGCGGCGTGAGAAGCCATGAGGT AGTCTCTTTTCCGGTTAGTGCGGCGTGAGAAGCCATGAGGT < 41bp 1 0.704739774543405 1 0.934492826461792 experiment 0.59052045091319 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10A ENSG00000198755 UTR5 Human protein_coding chr6:35436198 chr6:35436196 . . 0 19 hm5C_associated_SNPs_6866 0 0 1 0 1 RPL10A chr6:35436216 5'GT 35436216 Upstream 21bp
chr6 35436196 35436196 1 + C T rs373878090 35436201 + 35436181 35436221 41 CTCTTTTCCGGTTAGCGCGGCGTGAGAAGCCATGAGGTGAG CTCTTTTCCGGTTAGTGCGGCGTGAGAAGCCATGAGGTGAG < 41bp 1 0.396325033131583 1 0.501543164253235 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10A ENSG00000198755 UTR5 Human protein_coding chr6:35436201 chr6:35436196 . . 0 16 hm5C_associated_SNPs_6867 0 0 1 0 1 RPL10A chr6:35436216 5'GT 35436216 Upstream 21bp
chr6 37280744 37280744 1 + C A rs116200452 37280749 + 37280729 37280769 41 TCTCAAGACATGCTGCGAAGCATTGAGGCTGACAGCTTTTG TCTCAAGACATGCTGAGAAGCATTGAGGCTGACAGCTTTTG < 41bp 1 0.178009173827122 1 0.0697490274906158 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37280749 chr6:37280744 synonymous SNV . 0 16 hm5C_associated_SNPs_6869 0 0 1 0 2 TBC1D22B chr6:37280694 3'AG 37280694 Downstream 51bp
chr6 37280744 37280744 1 + C A rs116200452 37280749 + 37280729 37280769 41 TCTCAAGACATGCTGCGAAGCATTGAGGCTGACAGCTTTTG TCTCAAGACATGCTGAGAAGCATTGAGGCTGACAGCTTTTG < 41bp 1 0.178009173827122 1 0.0697490274906158 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37280749 chr6:37280744 synonymous SNV . 0 16 hm5C_associated_SNPs_6869 0 0 1 0 2 TBC1D22B chr6:37280800 5'GT 37280800 Upstream 57bp
chr6 42573513 42573513 1 + T C rs17855250 42573505 + 42573485 42573525 41 TGCTGTTTAATGATGAGGTTCACACCTATGAACAAGTTATT TGCTGTTTAATGATGAGGTTCACACCTACGAACAAGTTATT < 41bp 1 0.0652626508729152 1 0.0690574944019318 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBR2 ENSG00000024048 CDS Human protein_coding chr6:42573505 chr6:42573513 synonymous SNV . 0 29 hm5C_associated_SNPs_6886 0 0 1 0 2 UBR2 chr6:42573459 3'AG 42573459 Downstream 55bp
chr6 42573513 42573513 1 + T C rs17855250 42573505 + 42573485 42573525 41 TGCTGTTTAATGATGAGGTTCACACCTATGAACAAGTTATT TGCTGTTTAATGATGAGGTTCACACCTACGAACAAGTTATT < 41bp 1 0.0652626508729152 1 0.0690574944019318 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBR2 ENSG00000024048 CDS Human protein_coding chr6:42573505 chr6:42573513 synonymous SNV . 0 29 hm5C_associated_SNPs_6886 0 0 1 0 2 UBR2 chr6:42573597 5'GT 42573597 Upstream 85bp
chr6 43110003 43110003 1 + C T rs45453593 43110021 + 43110001 43110041 41 AACATCAAGCACACGGAGGCCCCCCTCTATGTCGTGGGTAT AATATCAAGCACACGGAGGCCCCCCTCTATGTCGTGGGTAT < 41bp 1 0.0724645144505604 1 0.102291762828827 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTK7 ENSG00000112655 CDS Human protein_coding chr6:43110021 chr6:43110003 synonymous SNV . 0 3 hm5C_associated_SNPs_6910 0 0 1 0 2 PTK7 chr6:43109910 3'AG 43109910 Downstream 94bp
chr6 43110003 43110003 1 + C T rs45453593 43110021 + 43110001 43110041 41 AACATCAAGCACACGGAGGCCCCCCTCTATGTCGTGGGTAT AATATCAAGCACACGGAGGCCCCCCTCTATGTCGTGGGTAT < 41bp 1 0.0724645144505604 1 0.102291762828827 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTK7 ENSG00000112655 CDS Human protein_coding chr6:43110021 chr6:43110003 synonymous SNV . 0 3 hm5C_associated_SNPs_6910 0 0 1 0 2 PTK7 chr6:43110037 5'GT 43110037 Upstream 35bp
chr6 43189433 43189433 1 + G A rs148551617 43189429 + 43189409 43189449 41 AGCTTCCTCCATAGCATGACCTGTGCCAAATGTAACCATGG AGCTTCCTCCATAGCATGACCTGTACCAAATGTAACCATGG < 41bp 1 0.223725475423601 1 0.158482015132904 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43189429 chr6:43189433 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_6911 0 0 0 0 2 CUL9 chr6:43189423 3'AG 43189423 Downstream 11bp
chr6 43189433 43189433 1 + G A rs148551617 43189429 + 43189409 43189449 41 AGCTTCCTCCATAGCATGACCTGTGCCAAATGTAACCATGG AGCTTCCTCCATAGCATGACCTGTACCAAATGTAACCATGG < 41bp 1 0.223725475423601 1 0.158482015132904 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43189429 chr6:43189433 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_6911 0 0 0 0 2 CUL9 chr6:43189516 5'GT 43189516 Upstream 84bp
chr6 44197181 44197181 1 + G A rs8187630 44197173 + 44197153 44197193 41 TCATGCTGGGTCTGGGAACGCTGCTCCCGTGGAATTTTTTC TCATGCTGGGTCTGGGAACGCTGCTCCCATGGAATTTTTTC < 41bp 1 0.428338326305513 1 0.135340839624405 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44197173 chr6:44197181 synonymous SNV . 0 29 hm5C_associated_SNPs_6914 0 0 1 0 2 SLC29A1 chr6:44197127 3'AG 44197127 Downstream 55bp
chr6 44197181 44197181 1 + G A rs8187630 44197173 + 44197153 44197193 41 TCATGCTGGGTCTGGGAACGCTGCTCCCGTGGAATTTTTTC TCATGCTGGGTCTGGGAACGCTGCTCCCATGGAATTTTTTC < 41bp 1 0.428338326305513 1 0.135340839624405 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44197173 chr6:44197181 synonymous SNV . 0 29 hm5C_associated_SNPs_6914 0 0 1 0 2 SLC29A1 chr6:44197208 5'GT 44197208 Upstream 28bp
chr6 44218120 44218120 1 + A G rs13296 44218121 + 44218101 44218141 41 ATAAAGATGATGAAGAAAAACCCAAGATCGAAGATGTGGGT ATAAAGATGATGAAGAAAAGCCCAAGATCGAAGATGTGGGT < 41bp 1 0.507864862322459 1 0.169384002685547 experiment 0.984270275355082 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44218121 chr6:44218120 synonymous SNV . 0 20 hm5C_associated_SNPs_6917 0 0 1 0 1 HSP90AB1 chr6:44218028 3'AG 44218028 Downstream 93bp
chr6 44219803 44219803 1 + G A rs324134 44219794 + 44219774 44219814 41 GAGCGAGTGCGGAAACGGGGCTTCGAGGTGGTATATATGAC GAGCGAGTGCGGAAACGGGGCTTCGAGGTAGTATATATGAC < 41bp 1 0.22398425428742 1 0.395386278629303 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219794 chr6:44219803 synonymous SNV . 0 30 hm5C_associated_SNPs_6918 0 0 1 0 1 HSP90AB1 chr6:44219736 3'AG 44219736 Downstream 68bp
chr6 44219803 44219803 1 + G A rs324134 44219814 + 44219794 44219834 41 CTTCGAGGTGGTATATATGACCGAGCCCATTGACGAGTACT CTTCGAGGTAGTATATATGACCGAGCCCATTGACGAGTACT < 41bp 1 0.294512791019274 1 0.108332812786102 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219814 chr6:44219803 synonymous SNV . 0 10 hm5C_associated_SNPs_6919 0 0 1 0 1 HSP90AB1 chr6:44219736 3'AG 44219736 Downstream 68bp
chr6 44219815 44219815 1 + C G rs149243943 44219814 + 44219794 44219834 41 CTTCGAGGTGGTATATATGACCGAGCCCATTGACGAGTACT CTTCGAGGTGGTATATATGACGGAGCCCATTGACGAGTACT < 41bp 1 0.656976440127241 1 0.659808456897736 experiment 0.686047119745517 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219814 chr6:44219815 synonymous SNV . 0 22 hm5C_associated_SNPs_6920 0 0 1 0 1 HSP90AB1 chr6:44219736 3'AG 44219736 Downstream 80bp
chr6 44219815 44219815 1 + C G rs149243943 44219827 + 44219807 44219847 41 TATATGACCGAGCCCATTGACGAGTACTGTGTGCAGCAGCT TATATGACGGAGCCCATTGACGAGTACTGTGTGCAGCAGCT < 41bp 1 0.716446238737335 1 0.559751391410828 experiment 0.567107522525329 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219827 chr6:44219815 synonymous SNV . 0 9 hm5C_associated_SNPs_6921 0 0 1 0 1 HSP90AB1 chr6:44219736 3'AG 44219736 Downstream 80bp
chr6 44219815 44219815 1 + C G rs149243943 44219833 + 44219813 44219853 41 ACCGAGCCCATTGACGAGTACTGTGTGCAGCAGCTCAAGGA ACGGAGCCCATTGACGAGTACTGTGTGCAGCAGCTCAAGGA < 41bp 1 0.512520646624403 1 0.0400611162185669 experiment 0.974958706751195 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219833 chr6:44219815 synonymous SNV . 0 3 hm5C_associated_SNPs_6922 0 0 1 0 1 HSP90AB1 chr6:44219736 3'AG 44219736 Downstream 80bp
chr6 44274725 44274725 1 - T A rs147091256 44274726 - 44274706 44274746 41 CGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC CGTCGAGCTGTGCGTTTCTCCTTGGAGATCTTAAAGGCACC < 41bp 1 0.49433126532283 1 0.692099690437317 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human protein_coding chr6:44274726 chr6:44274725 nonsynonymous SNV 0.095 0 22 hm5C_associated_SNPs_6924 2 0 1 0 2 AARS2 chr6:44274660 5'GT 44274660 Upstream 66bp
chr6 44274725 44274725 1 - T A rs147091256 44274726 - 44274706 44274746 41 CGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC CGTCGAGCTGTGCGTTTCTCCTTGGAGATCTTAAAGGCACC < 41bp 1 0.49433126532283 1 0.692099690437317 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human other chr6:44274726 chr6:44274725 nonsynonymous SNV 0.095 0 22 hm5C_associated_SNPs_6924 2 0 1 0 2 AARS2 chr6:44274768 3'AG 44274768 Downstream 44bp
chr6 44376192 44376192 1 + A G rs141567880 44376196 + 44376176 44376216 41 TTTAGATTTCAGATGCAGAACTCCAGGAAGTTGTAAAAGTA TTTAGATTTCAGATGCGGAACTCCAGGAAGTTGTAAAAGTA < 41bp 1 0.681639413010198 1 0.916961908340454 experiment 0.636721173979604 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC5L ENSG00000096401 CDS Human protein_coding chr6:44376196 chr6:44376192 synonymous SNV . 0 17 hm5C_associated_SNPs_6925 0 0 1 0 1 CDC5L chr6:44376181 3'AG 44376181 Downstream 12bp
chr6 44376206 44376206 1 + T C rs200087867 44376196 + 44376176 44376216 41 TTTAGATTTCAGATGCAGAACTCCAGGAAGTTGTAAAAGTA TTTAGATTTCAGATGCAGAACTCCAGGAAGCTGTAAAAGTA < 41bp 1 0.77028396604558 1 0.938772261142731 experiment 0.45943206790884 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC5L ENSG00000096401 CDS Human protein_coding chr6:44376196 chr6:44376206 nonsynonymous SNV 0.997 2 31 hm5C_associated_SNPs_6926 0 0 1 0 1 CDC5L chr6:44376181 3'AG 44376181 Downstream 26bp
chr6 47576969 47576969 1 + T A rs34069459 47576982 + 47576962 47577002 41 AAAAAAATTCCCTGGATGAACTTAGAGCCCAGATTATTGAA AAAAAAAATCCCTGGATGAACTTAGAGCCCAGATTATTGAA < 41bp 1 0.23126152534306 1 0.0954552292823792 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47576982 chr6:47576969 nonsynonymous SNV 0.976 0 8 hm5C_associated_SNPs_6928 1 0 1 0 1 CD2AP chr6:47577040 5'GT 47577040 Upstream 72bp
chr6 56820163 56820163 1 + G A rs12154043 56820161 + 56820141 56820181 41 CCAAGGAGCCAGGGGGAAAACCGAGAGGCGCTGACAGGAGC CCAAGGAGCCAGGGGGAAAACCAAGAGGCGCTGACAGGAGC < 41bp 1 0.761748024212977 1 0.564680933952332 experiment 0.476503951574046 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BEND6 ENSG00000151917 UTR5 Human protein_coding chr6:56820161 chr6:56820163 . . 0 23 hm5C_associated_SNPs_6929 0 0 0 0 1 BEND6 chr6:56820258 5'GT 56820258 Upstream 96bp
chr6 57182453 57182453 1 + A G rs558821130 57182463 + 57182443 57182483 41 CCACCCGGGAACAGTGGCTGCCACCGTTTGTGTTTTCCCGA CCACCCGGGAGCAGTGGCTGCCACCGTTTGTGTTTTCCCGA < 41bp 1 0.189609983297106 1 0.274285733699799 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRIM2 ENSG00000146143 UTR5 Human protein_coding chr6:57182463 chr6:57182453 . . 0 11 hm5C_associated_SNPs_6931 0 0 1 0 1 PRIM2 chr6:57182499 5'GT 57182499 Upstream 47bp
chr6 64288832 64288832 1 + A G rs11547434 64288830 + 64288810 64288850 41 CTTTTGATGATGGTGCACCACCATCCAACCAGATTGTTGAT CTTTTGATGATGGTGCACCACCGTCCAACCAGATTGTTGAT < 41bp 1 0.074339705344068 1 0.193542987108231 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTP4A1 ENSG00000112245 CDS Human protein_coding chr6:64288830 chr6:64288832 synonymous SNV . 0 23 hm5C_associated_SNPs_6932 0 0 1 0 1 PTP4A1 chr6:64288803 3'AG 64288803 Downstream 30bp
chr6 64288832 64288832 1 + A G rs11547434 64288831 + 64288811 64288851 41 TTTTGATGATGGTGCACCACCATCCAACCAGATTGTTGATG TTTTGATGATGGTGCACCACCGTCCAACCAGATTGTTGATG < 41bp 1 0.160411193891577 1 0.227948069572449 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTP4A1 ENSG00000112245 CDS Human protein_coding chr6:64288831 chr6:64288832 synonymous SNV . 0 22 hm5C_associated_SNPs_6933 0 0 1 0 1 PTP4A1 chr6:64288803 3'AG 64288803 Downstream 30bp
chr6 72003256 72003256 1 + T C rs35741445 72003257 + 72003237 72003277 41 ACTTCAAAGATATCCGATATCAAAATGACTTGAGCAATCTT ACTTCAAAGATATCCGATACCAAAATGACTTGAGCAATCTT < 41bp 1 0.596079605526124 1 0.233906120061874 experiment 0.807840788947753 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OGFRL1 ENSG00000119900 CDS Human protein_coding chr6:72003257 chr6:72003256 synonymous SNV . 0 20 hm5C_associated_SNPs_6935 0 0 1 0 2 OGFRL1 chr6:72003236 3'AG 72003236 Downstream 21bp
chr6 72003256 72003256 1 + T C rs35741445 72003257 + 72003237 72003277 41 ACTTCAAAGATATCCGATATCAAAATGACTTGAGCAATCTT ACTTCAAAGATATCCGATACCAAAATGACTTGAGCAATCTT < 41bp 1 0.596079605526124 1 0.233906120061874 experiment 0.807840788947753 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OGFRL1 ENSG00000119900 CDS Human protein_coding chr6:72003257 chr6:72003256 synonymous SNV . 0 20 hm5C_associated_SNPs_6935 0 0 1 0 2 OGFRL1 chr6:72003314 5'GT 72003314 Upstream 59bp
chr6 74475655 74475655 1 + G T rs138778967 74475665 + 74475645 74475685 41 ACCATTAGGTGAAGGTAACTCGTGCTGATGGCAACCAACTG ACCATTAGGTTAAGGTAACTCGTGCTGATGGCAACCAACTG < 41bp 1 0.261774299807261 1 0.345720082521439 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD109 ENSG00000156535 CDS Human protein_coding chr6:74475665 chr6:74475655 synonymous SNV . 0 11 hm5C_associated_SNPs_6936 0 0 0 0 1 CD109 chr6:74475653 3'AG 74475653 Downstream 3bp
chr6 74475675 74475675 1 + G A rs7741152 74475665 + 74475645 74475685 41 ACCATTAGGTGAAGGTAACTCGTGCTGATGGCAACCAACTG ACCATTAGGTGAAGGTAACTCGTGCTGATGACAACCAACTG < 41bp 1 0.317303806890209 1 0.374785423278809 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD109 ENSG00000156535 CDS Human protein_coding chr6:74475665 chr6:74475675 nonsynonymous SNV 0.979 1 31 hm5C_associated_SNPs_6937 0 0 0 0 1 CD109 chr6:74475653 3'AG 74475653 Downstream 23bp
chr6 80741206 80741206 1 + A G rs56007972 80741213 + 80741193 80741233 41 TCTTCTTCAGCAAATGAATGCATTTCGGTTAAAGGAAGAAT TCTTCTTCAGCAAGTGAATGCATTTCGGTTAAAGGAAGAAT < 41bp 1 0.0311986387858867 1 0.122527986764908 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TTK ENSG00000112742 CDS Human protein_coding chr6:80741213 chr6:80741206 nonsynonymous SNV 0.983 0 14 hm5C_associated_SNPs_6940 0 0 1 0 2 TTK chr6:80741184 3'AG 80741184 Downstream 23bp
chr6 80741206 80741206 1 + A G rs56007972 80741213 + 80741193 80741233 41 TCTTCTTCAGCAAATGAATGCATTTCGGTTAAAGGAAGAAT TCTTCTTCAGCAAGTGAATGCATTTCGGTTAAAGGAAGAAT < 41bp 1 0.0311986387858867 1 0.122527986764908 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TTK ENSG00000112742 CDS Human protein_coding chr6:80741213 chr6:80741206 nonsynonymous SNV 0.983 0 14 hm5C_associated_SNPs_6940 0 0 1 0 2 TTK chr6:80741276 5'GT 80741276 Upstream 71bp
chr6 88346196 88346196 1 + G T rs143108637 88346186 + 88346166 88346206 41 GGATTCAGAGGAGTATGCATCAGTCTTGCAGCTGCTGAGGT GGATTCAGAGGAGTATGCATCAGTCTTGCATCTGCTGAGGT < 41bp 1 0.224690198331979 1 0.598425209522247 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ORC3 ENSG00000135336 CDS Human protein_coding chr6:88346186 chr6:88346196 nonsynonymous SNV 0.797 4 31 hm5C_associated_SNPs_6947 0 0 1 2 2 ORC3 chr6:88346125 3'AG 88346125 Downstream 72bp
chr6 88346196 88346196 1 + G T rs143108637 88346186 + 88346166 88346206 41 GGATTCAGAGGAGTATGCATCAGTCTTGCAGCTGCTGAGGT GGATTCAGAGGAGTATGCATCAGTCTTGCATCTGCTGAGGT < 41bp 1 0.224690198331979 1 0.598425209522247 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ORC3 ENSG00000135336 CDS Human protein_coding chr6:88346186 chr6:88346196 nonsynonymous SNV 0.797 4 31 hm5C_associated_SNPs_6947 0 0 1 2 2 ORC3 chr6:88346204 5'GT 88346204 Upstream 9bp
chr6 108487936 108487936 1 + C T rs17840265 108487933 + 108487913 108487953 41 GCTGCCGGCCGGGACTCGGGCAGCGCCCACCAACCGCTCCG GCTGCCGGCCGGGACTCGGGCAGTGCCCACCAACCGCTCCG < 41bp 1 0.741984558013549 1 0.210790276527405 experiment 0.516030883972902 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR2E1 ENSG00000112333 UTR5 Human protein_coding chr6:108487933 chr6:108487936 . . 0 24 hm5C_associated_SNPs_6951 0 0 0 0 1 NR2E1 chr6:108487994 5'GT 108487994 Upstream 59bp
chr6 108487936 108487936 1 + C T rs17840265 108487938 + 108487918 108487958 41 CGGCCGGGACTCGGGCAGCGCCCACCAACCGCTCCGCCCCG CGGCCGGGACTCGGGCAGTGCCCACCAACCGCTCCGCCCCG < 41bp 1 0.48414500333476 1 0.202457785606384 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR2E1 ENSG00000112333 UTR5 Human protein_coding chr6:108487938 chr6:108487936 . . 0 19 hm5C_associated_SNPs_6952 0 0 0 0 1 NR2E1 chr6:108487994 5'GT 108487994 Upstream 59bp
chr6 108487936 108487936 1 + C T rs17840265 108487939 + 108487919 108487959 41 GGCCGGGACTCGGGCAGCGCCCACCAACCGCTCCGCCCCGG GGCCGGGACTCGGGCAGTGCCCACCAACCGCTCCGCCCCGG < 41bp 1 0.60786473197615 1 0.677229940891266 experiment 0.7842705360477 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR2E1 ENSG00000112333 UTR5 Human protein_coding chr6:108487939 chr6:108487936 . . 0 18 hm5C_associated_SNPs_6953 0 0 0 0 1 NR2E1 chr6:108487994 5'GT 108487994 Upstream 59bp
chr6 110056402 110056402 1 + C A rs121908288 110056408 + 110056388 110056428 41 ATCTCACTGTCTTGCGAATGCCCCTGGAGATGTTAAAGTCA ATCTCACTGTCTTGAGAATGCCCCTGGAGATGTTAAAGTCA < 41bp 1 0.150791427430949 1 0.105975657701492 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FIG4 ENSG00000112367 CDS Human protein_coding chr6:110056408 chr6:110056402 synonymous SNV . 0 15 hm5C_associated_SNPs_6954 0 0 0 0 2 FIG4 chr6:110056353 3'AG 110056353 Downstream 50bp
chr6 110056402 110056402 1 + C A rs121908288 110056408 + 110056388 110056428 41 ATCTCACTGTCTTGCGAATGCCCCTGGAGATGTTAAAGTCA ATCTCACTGTCTTGAGAATGCCCCTGGAGATGTTAAAGTCA < 41bp 1 0.150791427430949 1 0.105975657701492 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FIG4 ENSG00000112367 CDS Human protein_coding chr6:110056408 chr6:110056402 synonymous SNV . 0 15 hm5C_associated_SNPs_6954 0 0 0 0 2 FIG4 chr6:110056501 5'GT 110056501 Upstream 100bp
chr6 110062679 110062679 1 + A G rs61729092 110062698 + 110062678 110062718 41 CACTCTAATAGCTAGAAGATCCAGTAAATTTGCTGGCACCC CGCTCTAATAGCTAGAAGATCCAGTAAATTTGCTGGCACCC < 41bp 1 0.186783592416716 1 0.867338001728058 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FIG4 ENSG00000112367 CDS Human protein_coding chr6:110062698 chr6:110062679 nonsynonymous SNV 0.978 2 2 hm5C_associated_SNPs_6955 4 0 1 0 2 FIG4 chr6:110062647 3'AG 110062647 Downstream 33bp
chr6 110062679 110062679 1 + A G rs61729092 110062698 + 110062678 110062718 41 CACTCTAATAGCTAGAAGATCCAGTAAATTTGCTGGCACCC CGCTCTAATAGCTAGAAGATCCAGTAAATTTGCTGGCACCC < 41bp 1 0.186783592416716 1 0.867338001728058 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FIG4 ENSG00000112367 CDS Human protein_coding chr6:110062698 chr6:110062679 nonsynonymous SNV 0.978 2 2 hm5C_associated_SNPs_6955 4 0 1 0 2 FIG4 chr6:110062747 5'GT 110062747 Upstream 69bp
chr6 110533361 110533361 1 + C T rs376762186 110533371 + 110533351 110533391 41 ACTATCAAGGCAGGTCCTATCTTCACATACCTCAGGATGTT ACTATCAAGGTAGGTCCTATCTTCACATACCTCAGGATGTT < 41bp 1 0.754213545594051 1 0.589447498321533 experiment 0.491572908811899 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDC40 ENSG00000168438 CDS Human protein_coding chr6:110533371 chr6:110533361 synonymous SNV . 0 11 hm5C_associated_SNPs_6956 0 0 1 0 1 CDC40 chr6:110533336 3'AG 110533336 Downstream 26bp
chr6 117859964 117859964 1 + G A rs76109131 117859950 + 117859930 117859970 41 ACAGTAGCAACAACCACAAACCACGAGAGTGGCTGGAGATC ACAGTAGCAACAACCACAAACCACGAGAGTGGCTAGAGATC < 41bp 1 0.240774797828517 1 0.185696631669998 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117859950 chr6:117859964 synonymous SNV . 0 35 hm5C_associated_SNPs_6958 0 0 0 0 1 DCBLD1 chr6:117859998 5'GT 117859998 Upstream 35bp
chr6 118015230 118015230 1 + C T rs146009370 118015223 + 118015203 118015243 41 GCCATTTGGCAGTGAAGGTGCTGTCTCCGGAAGATGGAAAA GCCATTTGGCAGTGAAGGTGCTGTCTCTGGAAGATGGAAAA < 41bp 1 0.185403332485599 1 0.276934325695038 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUS1 ENSG00000153989 CDS Human protein_coding chr6:118015223 chr6:118015230 nonsynonymous SNV 0.980 1 28 hm5C_associated_SNPs_6961 0 0 0 0 1 NUS1 chr6:118015194 3'AG 118015194 Downstream 37bp
chr6 131520642 131520642 1 + G C rs34221901 131520650 + 131520630 131520670 41 GGCATCCTGGTAGGAGAGAGCAGAAGTTTTAAACCTCATTT GGCATCCTGGTACGAGAGAGCAGAAGTTTTAAACCTCATTT < 41bp 1 0.784082213867463 1 0.404330909252167 experiment 0.431835572265073 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP7 ENSG00000118507 CDS Human protein_coding chr6:131520650 chr6:131520642 nonsynonymous SNV 0.979 1 13 hm5C_associated_SNPs_6969 0 0 1 0 2 AKAP7 chr6:131520601 3'AG 131520601 Downstream 42bp
chr6 131520642 131520642 1 + G C rs34221901 131520650 + 131520630 131520670 41 GGCATCCTGGTAGGAGAGAGCAGAAGTTTTAAACCTCATTT GGCATCCTGGTACGAGAGAGCAGAAGTTTTAAACCTCATTT < 41bp 1 0.784082213867463 1 0.404330909252167 experiment 0.431835572265073 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP7 ENSG00000118507 CDS Human protein_coding chr6:131520650 chr6:131520642 nonsynonymous SNV 0.979 1 13 hm5C_associated_SNPs_6969 0 0 1 0 2 AKAP7 chr6:131520713 5'GT 131520713 Upstream 72bp
chr6 131520655 131520655 1 + G A rs1190788 131520650 + 131520630 131520670 41 GGCATCCTGGTAGGAGAGAGCAGAAGTTTTAAACCTCATTT GGCATCCTGGTAGGAGAGAGCAGAAATTTTAAACCTCATTT < 41bp 1 0.760773414415893 1 0.383245855569839 experiment 0.478453171168214 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP7 ENSG00000118507 CDS Human protein_coding chr6:131520650 chr6:131520655 nonsynonymous SNV 0.996 0 26 hm5C_associated_SNPs_6970 0 0 1 0 2 AKAP7 chr6:131520601 3'AG 131520601 Downstream 55bp
chr6 131520655 131520655 1 + G A rs1190788 131520650 + 131520630 131520670 41 GGCATCCTGGTAGGAGAGAGCAGAAGTTTTAAACCTCATTT GGCATCCTGGTAGGAGAGAGCAGAAATTTTAAACCTCATTT < 41bp 1 0.760773414415893 1 0.383245855569839 experiment 0.478453171168214 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP7 ENSG00000118507 CDS Human protein_coding chr6:131520650 chr6:131520655 nonsynonymous SNV 0.996 0 26 hm5C_associated_SNPs_6970 0 0 1 0 2 AKAP7 chr6:131520713 5'GT 131520713 Upstream 59bp
chr6 131904574 131904574 1 + G A rs182650447 131904583 + 131904563 131904603 41 GCACACCAGTCGTGGGAGGTCTGACATACAGAGAAGGTCTC GCACACCAGTCATGGGAGGTCTGACATACAGAGAAGGTCTC < 41bp 1 0.442852274352552 1 0.220117837190628 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARG1 ENSG00000118520 CDS Human protein_coding chr6:131904583 chr6:131904574 nonsynonymous SNV 0.470 1 12 hm5C_associated_SNPs_6971 0 0 1 0 2 ARG1 chr6:131904495 3'AG 131904495 Downstream 80bp
chr6 131904574 131904574 1 + G A rs182650447 131904583 + 131904563 131904603 41 GCACACCAGTCGTGGGAGGTCTGACATACAGAGAAGGTCTC GCACACCAGTCATGGGAGGTCTGACATACAGAGAAGGTCTC < 41bp 1 0.442852274352552 1 0.220117837190628 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARG1 ENSG00000118520 CDS Human protein_coding chr6:131904583 chr6:131904574 nonsynonymous SNV 0.470 1 12 hm5C_associated_SNPs_6971 0 0 1 0 2 ARG1 chr6:131904631 5'GT 131904631 Upstream 58bp
chr6 133135710 133135710 1 + C G rs562408306 133135725 + 133135705 133135745 41 GGCCTCTTTCCCTGCCGCCGCCGAGTCGCGCGGAGGCGGAG GGCCTGTTTCCCTGCCGCCGCCGAGTCGCGCGGAGGCGGAG < 41bp 1 0.501304620424664 1 0.653038620948792 experiment 0.997390759150672 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RPS12 ENSG00000112306 UTR5 Human protein_coding chr6:133135725 chr6:133135710 . . 0 6 hm5C_associated_SNPs_6975 0 0 1 0 1 RPS12 chr6:133135752 5'GT 133135752 Upstream 43bp
chr6 133135737 133135737 1 + G C rs562249470 133135725 + 133135705 133135745 41 GGCCTCTTTCCCTGCCGCCGCCGAGTCGCGCGGAGGCGGAG GGCCTCTTTCCCTGCCGCCGCCGAGTCGCGCGCAGGCGGAG < 41bp 1 0.485316675055383 1 0.74211049079895 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RPS12 ENSG00000112306 UTR5 Human protein_coding chr6:133135725 chr6:133135737 . . 0 33 hm5C_associated_SNPs_6976 0 0 1 0 1 RPS12 chr6:133135752 5'GT 133135752 Upstream 16bp
chr6 133135884 133135884 1 + C G rs542049814 133135887 + 133135867 133135907 41 TTAGTGCGTTCAAGATTCAACTTCACCCGTAACCCACCGCC TTAGTGCGTTCAAGATTGAACTTCACCCGTAACCCACCGCC < 41bp 1 0.540910400555574 1 0.119156360626221 experiment 0.918179198888851 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS12 ENSG00000112306 UTR5 Human protein_coding chr6:133135887 chr6:133135884 . . 0 18 hm5C_associated_SNPs_6977 0 0 1 0 1 RPS12 chr6:133135871 3'AG 133135871 Downstream 14bp
chr6 133135886 133135886 1 + A C rs9483504 133135887 + 133135867 133135907 41 TTAGTGCGTTCAAGATTCAACTTCACCCGTAACCCACCGCC TTAGTGCGTTCAAGATTCACCTTCACCCGTAACCCACCGCC < 41bp 1 0.539335768670842 1 0.137883871793747 experiment 0.921328462658316 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS12 ENSG00000112306 UTR5 Human protein_coding chr6:133135887 chr6:133135886 . . 0 20 hm5C_associated_SNPs_6978 0 0 1 0 1 RPS12 chr6:133135871 3'AG 133135871 Downstream 16bp
chr6 133852368 133852368 1 + C T rs114670853 133852353 + 133852333 133852373 41 GATTCTGTGTTCAGAAGAGGCTGCCGGCATAAAACCTAAAT GATTCTGTGTTCAGAAGAGGCTGCCGGCATAAAACTTAAAT < 41bp 1 0.423374976518326 1 0.300348460674286 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TARID ENSG00000227954 ncRNA_intronic Human protein_coding chr6:133852353 chr6:133852368 . . 0 36 hm5C_associated_SNPs_6995 0 0 0 0 1 TARID chr6:133852347 3'AG 133852347 Downstream 22bp
chr6 135523732 135523732 1 + C T rs210801 135523736 + 135523716 135523756 41 GGCTGGTCTTGAACTCCTGACCTCAGGTGATCTACCCGCCT GGCTGGTCTTGAACTCTTGACCTCAGGTGATCTACCCGCCT < 41bp 1 0.252300981552655 1 0.0902288556098938 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYB ENSG00000118513 CDS Human protein_coding chr6:135523736 chr6:135523732 synonymous SNV . 0 17 hm5C_associated_SNPs_6997 0 0 0 0 1 MYB chr6:135523807 5'GT 135523807 Upstream 76bp
chr6 135523741 135523741 1 + G A rs183489799 135523736 + 135523716 135523756 41 GGCTGGTCTTGAACTCCTGACCTCAGGTGATCTACCCGCCT GGCTGGTCTTGAACTCCTGACCTCAAGTGATCTACCCGCCT < 41bp 1 0.180533904468566 1 0.0722374320030212 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYB ENSG00000118513 CDS Human protein_coding chr6:135523736 chr6:135523741 nonsynonymous SNV 0.003 1 26 hm5C_associated_SNPs_6998 0 0 0 0 1 MYB chr6:135523807 5'GT 135523807 Upstream 67bp
chr6 135523774 135523774 1 + A G rs7762830 135523764 + 135523744 135523784 41 GATCTACCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAGG GATCTACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGG < 41bp 1 0.323584278763212 1 0.646800816059113 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYB ENSG00000118513 CDS Human protein_coding chr6:135523764 chr6:135523774 nonsynonymous SNV 0.000 1 31 hm5C_associated_SNPs_6999 0 0 0 0 1 MYB chr6:135523807 5'GT 135523807 Upstream 34bp
chr6 135523774 135523774 1 + A G rs7762830 135523765 + 135523745 135523785 41 ATCTACCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGC ATCTACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGC < 41bp 1 0.568334942381219 1 0.504132747650146 experiment 0.863330115237561 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYB ENSG00000118513 CDS Human protein_coding chr6:135523765 chr6:135523774 nonsynonymous SNV 0.000 1 30 hm5C_associated_SNPs_7000 0 0 0 0 1 MYB chr6:135523807 5'GT 135523807 Upstream 34bp
chr6 138727166 138727166 1 + T G rs140459982 138727165 + 138727145 138727185 41 CGTGGAGCCTGGTTCAGGTCCTTTTAGTGAGTCTACCATTA CGTGGAGCCTGGTTCAGGTCCGTTTAGTGAGTCTACCATTA < 41bp 1 0.111663812360023 1 0.0329959392547607 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HEBP2 ENSG00000051620 CDS Human protein_coding chr6:138727165 chr6:138727166 synonymous SNV . 0 22 hm5C_associated_SNPs_7017 0 0 1 0 1 HEBP2 chr6:138727108 3'AG 138727108 Downstream 59bp
chr6 144782354 144782354 1 + A G rs147576440 144782344 + 144782324 144782364 41 AATAAACAGAACTGAAGGGCCAACCTGGACATGCATATCTG AATAAACAGAACTGAAGGGCCAACCTGGACGTGCATATCTG < 41bp 1 0.035389626743096 1 0.165154159069061 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144782344 chr6:144782354 nonsynonymous SNV 0.200 0 31 hm5C_associated_SNPs_7020 0 0 1 0 1 UTRN chr6:144782333 3'AG 144782333 Downstream 22bp
chr6 144876008 144876008 1 + C T rs78815593 144875991 + 144875971 144876011 41 TCTATATTCTTCAGCAAGCCCGACGGGATCCACTCACCAAA TCTATATTCTTCAGCAAGCCCGACGGGATCCACTCACTAAA < 41bp 1 0.209443916224626 1 0.266138195991516 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144875991 chr6:144876008 synonymous SNV . 0 38 hm5C_associated_SNPs_7021 0 0 1 0 1 UTRN chr6:144876029 5'GT 144876029 Upstream 22bp
chr6 150131820 150131820 1 + C T rs77141358 150131808 + 150131788 150131828 41 TAAAATTACAGTGGATTGCTCATCTCAGTCCTCAAAGCTTT TAAAATTACAGTGGATTGCTCATCTCAGTCCTTAAAGCTTT < 41bp 1 0.146055284064568 1 0.0587822794914246 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCMT1 ENSG00000120265 UTR3 Human protein_coding chr6:150131808 chr6:150131820 . . 0 33 hm5C_associated_SNPs_7037 0 0 1 0 1 PCMT1 chr6:150131752 3'AG 150131752 Downstream 69bp
chr6 155129280 155129280 1 + A T rs140506252 155129276 + 155129256 155129296 41 CACCATCACAAGGGAGTAGTCAGCAGCATTTTCTTGAACCT CACCATCACAAGGGAGTAGTCAGCTGCATTTTCTTGAACCT < 41bp 1 0.595113407646407 1 0.769823253154755 experiment 0.809773184707186 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155129276 chr6:155129280 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_7054 0 0 1 0 2 SCAF8 chr6:155129204 3'AG 155129204 Downstream 77bp
chr6 155129280 155129280 1 + A T rs140506252 155129276 + 155129256 155129296 41 CACCATCACAAGGGAGTAGTCAGCAGCATTTTCTTGAACCT CACCATCACAAGGGAGTAGTCAGCTGCATTTTCTTGAACCT < 41bp 1 0.595113407646407 1 0.769823253154755 experiment 0.809773184707186 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155129276 chr6:155129280 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_7054 0 0 1 0 2 SCAF8 chr6:155129335 5'GT 155129335 Upstream 56bp
chr6 158870081 158870081 1 + A G rs705956 158870090 + 158870070 158870110 41 TGCCACGGCAGAATGCTGGCCCACGTCCTCTTGCACGAGTC TGCCACGGCAGGATGCTGGCCCACGTCCTCTTGCACGAGTC < 41bp 1 0.177871843855107 1 0.105227380990982 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TULP4 ENSG00000130338 CDS Human protein_coding chr6:158870090 chr6:158870081 synonymous SNV . 0 12 hm5C_associated_SNPs_7060 0 0 1 0 1 TULP4 chr6:158870028 3'AG 158870028 Downstream 54bp
chr6 160485839 160485839 1 + G A rs571049189 160485837 + 160485817 160485857 41 TGCCTCTTAACTTTTTTAGCCAGTATTTCTAAAGGAGACTT TGCCTCTTAACTTTTTTAGCCAATATTTCTAAAGGAGACTT < 41bp 1 0.0450426597751898 1 0.0787362456321716 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160485837 chr6:160485839 nonsynonymous SNV 0.329 3 23 hm5C_associated_SNPs_7061 0 0 1 0 2 IGF2R chr6:160485836 3'AG 160485836 Downstream 4bp
chr6 160485839 160485839 1 + G A rs571049189 160485837 + 160485817 160485857 41 TGCCTCTTAACTTTTTTAGCCAGTATTTCTAAAGGAGACTT TGCCTCTTAACTTTTTTAGCCAATATTTCTAAAGGAGACTT < 41bp 1 0.0450426597751898 1 0.0787362456321716 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160485837 chr6:160485839 nonsynonymous SNV 0.329 3 23 hm5C_associated_SNPs_7061 0 0 1 0 2 IGF2R chr6:160485933 5'GT 160485933 Upstream 95bp
chr6 160494409 160494409 1 + A G rs629849 160494408 + 160494388 160494428 41 TTCGTGTGCAGGCCTGAGGCCAGGCCAACCAATAGGCCCAT TTCGTGTGCAGGCCTGAGGCCGGGCCAACCAATAGGCCCAT < 41bp 1 0.386050489709849 1 0.908053994178772 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160494408 chr6:160494409 nonsynonymous SNV 0.492 0 22 hm5C_associated_SNPs_7062 0 1 1 0 1 IGF2R chr6:160494501 5'GT 160494501 Upstream 93bp
chr6 161510472 161510472 1 + C T rs202168620 161510492 + 161510472 161510512 41 CGGTCATCGCCAAAGCTTTGCAGCAGCTGAAGGTATTACAC TGGTCATCGCCAAAGCTTTGCAGCAGCTGAAGGTATTACAC < 41bp 1 0.687422588541174 1 0.525712907314301 experiment 0.625154822917653 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161510492 chr6:161510472 nonsynonymous SNV 0.994 3 1 hm5C_associated_SNPs_7064 0 0 1 0 1 MAP3K4 chr6:161510503 5'GT 161510503 Upstream 32bp
chr6 161519331 161519331 1 + C T rs200257460 161519314 + 161519294 161519334 41 TTTCTTCTTGTCTTAGCACTCGGAGCATGCCTTCCGACGCG TTTCTTCTTGTCTTAGCACTCGGAGCATGCCTTCCGATGCG < 41bp 1 0.70626505676845 1 0.940339207649231 experiment 0.5874698864631 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161519314 chr6:161519331 synonymous SNV . 0 38 hm5C_associated_SNPs_7065 0 0 1 0 1 MAP3K4 chr6:161519310 3'AG 161519310 Downstream 22bp
chr6 168314939 168314939 1 + G A rs149079362 168314938 + 168314918 168314958 41 AGCAAGACCGAGACCTTAGTCGGATCACACTGGATGCTCAA AGCAAGACCGAGACCTTAGTCAGATCACACTGGATGCTCAA < 41bp 1 0.324134559758107 1 0.886480808258057 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168314938 chr6:168314939 nonsynonymous SNV 0.980 2 22 hm5C_associated_SNPs_7066 0 0 1 0 2 AFDN chr6:168314848 3'AG 168314848 Downstream 92bp
chr6 168314939 168314939 1 + G A rs149079362 168314938 + 168314918 168314958 41 AGCAAGACCGAGACCTTAGTCGGATCACACTGGATGCTCAA AGCAAGACCGAGACCTTAGTCAGATCACACTGGATGCTCAA < 41bp 1 0.324134559758107 1 0.886480808258057 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168314938 chr6:168314939 nonsynonymous SNV 0.980 2 22 hm5C_associated_SNPs_7066 0 0 1 0 2 AFDN chr6:168314993 5'GT 168314993 Upstream 55bp
chr6 168363172 168363172 1 + G A rs141410347 168363160 + 168363140 168363180 41 CAGCAGTTAGAAGAGATGCGCAAGCGGGAAGCGGAAGACCG CAGCAGTTAGAAGAGATGCGCAAGCGGGAAGCAGAAGACCG < 41bp 1 0.299628767772108 1 0.437481880187988 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363160 chr6:168363172 synonymous SNV . 0 33 hm5C_associated_SNPs_7070 0 0 1 0 3 AFDN chr6:168363113 3'AG 168363113 Downstream 60bp
chr6 168363172 168363172 1 + G A rs141410347 168363160 + 168363140 168363180 41 CAGCAGTTAGAAGAGATGCGCAAGCGGGAAGCGGAAGACCG CAGCAGTTAGAAGAGATGCGCAAGCGGGAAGCAGAAGACCG < 41bp 1 0.299628767772108 1 0.437481880187988 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363160 chr6:168363172 synonymous SNV . 0 33 hm5C_associated_SNPs_7070 0 0 1 0 3 AFDN chr6:168363119 3'AG 168363119 Downstream 54bp
chr6 168363172 168363172 1 + G A rs141410347 168363160 + 168363140 168363180 41 CAGCAGTTAGAAGAGATGCGCAAGCGGGAAGCGGAAGACCG CAGCAGTTAGAAGAGATGCGCAAGCGGGAAGCAGAAGACCG < 41bp 1 0.299628767772108 1 0.437481880187988 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363160 chr6:168363172 synonymous SNV . 0 33 hm5C_associated_SNPs_7070 0 0 1 0 3 AFDN chr6:168363247 5'GT 168363247 Upstream 76bp
chr7 286402 286402 1 + A G rs141256626 286404 + 286384 286424 41 AACGAGGGAGCAGGAGACACCCCCTGACTTTTTTTATTTCT AACGAGGGAGCAGGAGACGCCCCCTGACTTTTTTTATTTCT < 41bp 1 0.0705584019624316 1 0.160238087177277 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAM20C ENSG00000177706 CDS Human protein_coding chr7:286404 chr7:286402 synonymous SNV . 0 19 hm5C_associated_SNPs_7077 1 0 0 0 2 FAM20C chr7:286381 3'AG 286381 Downstream 22bp
chr7 286402 286402 1 + A G rs141256626 286404 + 286384 286424 41 AACGAGGGAGCAGGAGACACCCCCTGACTTTTTTTATTTCT AACGAGGGAGCAGGAGACGCCCCCTGACTTTTTTTATTTCT < 41bp 1 0.0705584019624316 1 0.160238087177277 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAM20C ENSG00000177706 CDS Human protein_coding chr7:286404 chr7:286402 synonymous SNV . 0 19 hm5C_associated_SNPs_7077 1 0 0 0 2 FAM20C chr7:286473 5'GT 286473 Upstream 72bp
chr7 819695 819695 1 + A G rs61755909 819711 + 819691 819731 41 TCCTACTATCAGAGCAGTGTCCAGTACCTGTACCGAGAGTT TCCTGCTATCAGAGCAGTGTCCAGTACCTGTACCGAGAGTT < 41bp 1 0.157136086986258 1 0.209117233753204 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:819711 chr7:819695 nonsynonymous SNV 0.027 0 5 hm5C_associated_SNPs_7079 1 0 1 0 1 DNAAF5 chr7:819781 5'GT 819781 Upstream 87bp
chr7 897492 897492 1 + A G rs10950789 897491 + 897471 897511 41 TGGTGAGCAGCTCCTGCCCACAGTCGAGCACCTCCAGCTGG TGGTGAGCAGCTCCTGCCCACGGTCGAGCACCTCCAGCTGG < 41bp 1 0.311421575820556 1 0.565121948719025 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SUN1 ENSG00000164828 CDS Human protein_coding chr7:897491 chr7:897492 synonymous SNV . 0 22 hm5C_associated_SNPs_7080 0 0 1 0 1 SUN1 chr7:897465 3'AG 897465 Downstream 28bp
chr7 897496 897496 1 + G A rs59910530 897491 + 897471 897511 41 TGGTGAGCAGCTCCTGCCCACAGTCGAGCACCTCCAGCTGG TGGTGAGCAGCTCCTGCCCACAGTCAAGCACCTCCAGCTGG < 41bp 1 0.212607986482081 1 0.44044092297554 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SUN1 ENSG00000164828 CDS Human protein_coding chr7:897491 chr7:897496 nonsynonymous SNV 0.000 0 26 hm5C_associated_SNPs_7081 0 0 1 0 1 SUN1 chr7:897465 3'AG 897465 Downstream 32bp
chr7 930608 930608 1 + G A rs11543223 930607 + 930587 930627 41 GTATCATTTTCTGCACTCAGCGGACGGGGAGGGCTGTGCCA GTATCATTTTCTGCACTCAGCAGACGGGGAGGGCTGTGCCA < 41bp 1 0.411891772208325 1 0.690922856330872 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GET4 ENSG00000239857 CDS Human protein_coding chr7:930607 chr7:930608 synonymous SNV . 0 22 hm5C_associated_SNPs_7082 0 0 1 0 2 GET4 chr7:930565 3'AG 930565 Downstream 44bp
chr7 930608 930608 1 + G A rs11543223 930607 + 930587 930627 41 GTATCATTTTCTGCACTCAGCGGACGGGGAGGGCTGTGCCA GTATCATTTTCTGCACTCAGCAGACGGGGAGGGCTGTGCCA < 41bp 1 0.411891772208325 1 0.690922856330872 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GET4 ENSG00000239857 CDS Human protein_coding chr7:930607 chr7:930608 synonymous SNV . 0 22 hm5C_associated_SNPs_7082 0 0 1 0 2 GET4 chr7:930703 5'GT 930703 Upstream 96bp
chr7 1126843 1126843 1 + C T rs556540795 1126863 + 1126843 1126883 41 CCCTGGTGGGGAAGAGGCCACCAACATCTGGACGGCAGGTA TCCTGGTGGGGAAGAGGCCACCAACATCTGGACGGCAGGTA < 41bp 1 0.0995395239553868 1 0.454395294189453 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPER1 ENSG00000164850 UTR5 Human protein_coding chr7:1126863 chr7:1126843 . . 0 1 hm5C_associated_SNPs_7084 0 0 1 0 1 GPER1 chr7:1126880 5'GT 1126880 Upstream 38bp
chr7 1126876 1126876 1 + G A rs10269151 1126863 + 1126843 1126883 41 CCCTGGTGGGGAAGAGGCCACCAACATCTGGACGGCAGGTA CCCTGGTGGGGAAGAGGCCACCAACATCTGGACAGCAGGTA < 41bp 1 0.0925816295466481 1 0.355671226978302 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPER1 ENSG00000164850 UTR5 Human protein_coding chr7:1126863 chr7:1126876 . . 0 34 hm5C_associated_SNPs_7085 0 0 1 0 1 GPER1 chr7:1126880 5'GT 1126880 Upstream 5bp
chr7 2394934 2394934 1 + G C rs185762794 2394930 + 2394910 2394950 41 CAGCCGGGCCCAGGCGGTGTCCGAGGACGCGGGAGGAAACG CAGCCGGGCCCAGGCGGTGTCCGACGACGCGGGAGGAAACG < 41bp 1 0.337266109071425 1 0.357235491275787 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2394930 chr7:2394934 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_7091 0 0 1 0 1 EIF3B chr7:2394869 3'AG 2394869 Downstream 66bp
chr7 2394991 2394991 1 + C T rs11551167 2394994 + 2394974 2395014 41 CCCCGGGCGCTGGAGAACGGCGACGCGGACGAGCCCTCCTT CCCCGGGCGCTGGAGAATGGCGACGCGGACGAGCCCTCCTT < 41bp 1 0.768519276117894 1 0.699083626270294 experiment 0.462961447764212 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2394994 chr7:2394991 synonymous SNV . 0 18 hm5C_associated_SNPs_7092 0 0 1 0 1 EIF3B chr7:2395055 5'GT 2395055 Upstream 65bp
chr7 2394991 2394991 1 + C T rs11551167 2395007 + 2394987 2395027 41 AGAACGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAG AGAATGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAG < 41bp 1 0.082302031001101 1 0.171684801578522 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395007 chr7:2394991 synonymous SNV . 0 5 hm5C_associated_SNPs_7093 0 0 1 0 1 EIF3B chr7:2395055 5'GT 2395055 Upstream 65bp
chr7 2394991 2394991 1 + C T rs11551167 2395008 + 2394988 2395028 41 GAACGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAGG GAATGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAGG < 41bp 1 0.150058911745432 1 0.114636063575745 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395008 chr7:2394991 synonymous SNV . 0 4 hm5C_associated_SNPs_7094 0 0 1 0 1 EIF3B chr7:2395055 5'GT 2395055 Upstream 65bp
chr7 2394991 2394991 1 + C T rs11551167 2395011 + 2394991 2395031 41 CGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAGGACT TGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAGGACT < 41bp 1 0.0762396618268052 1 0.140939384698868 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395011 chr7:2394991 synonymous SNV . 0 1 hm5C_associated_SNPs_7095 0 0 1 0 1 EIF3B chr7:2395055 5'GT 2395055 Upstream 65bp
chr7 2395008 2395008 1 + C T rs545964398 2394994 + 2394974 2395014 41 CCCCGGGCGCTGGAGAACGGCGACGCGGACGAGCCCTCCTT CCCCGGGCGCTGGAGAACGGCGACGCGGACGAGCTCTCCTT < 41bp 1 0.677243754024285 1 0.588987827301025 experiment 0.645512491951429 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2394994 chr7:2395008 nonsynonymous SNV 0.946 1 35 hm5C_associated_SNPs_7096 0 0 1 0 1 EIF3B chr7:2395055 5'GT 2395055 Upstream 48bp
chr7 2395008 2395008 1 + C T rs545964398 2395007 + 2394987 2395027 41 AGAACGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAG AGAACGGCGACGCGGACGAGCTCTCCTTCAGCGACCCCGAG < 41bp 1 0.194585502259223 1 0.193403035402298 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395007 chr7:2395008 nonsynonymous SNV 0.946 1 22 hm5C_associated_SNPs_7097 0 0 1 0 1 EIF3B chr7:2395055 5'GT 2395055 Upstream 48bp
chr7 2395008 2395008 1 + C T rs545964398 2395011 + 2394991 2395031 41 CGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAGGACT CGGCGACGCGGACGAGCTCTCCTTCAGCGACCCCGAGGACT < 41bp 1 0.10454492773572 1 0.0852477252483368 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395011 chr7:2395008 nonsynonymous SNV 0.946 1 18 hm5C_associated_SNPs_7098 0 0 1 0 1 EIF3B chr7:2395055 5'GT 2395055 Upstream 48bp
chr7 2395008 2395008 1 + C T rs545964398 2395015 + 2394995 2395035 41 GACGCGGACGAGCCCTCCTTCAGCGACCCCGAGGACTTCGT GACGCGGACGAGCTCTCCTTCAGCGACCCCGAGGACTTCGT < 41bp 1 0.685753221459896 1 0.755803644657135 experiment 0.628493557080207 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395015 chr7:2395008 nonsynonymous SNV 0.946 1 14 hm5C_associated_SNPs_7099 0 0 1 0 1 EIF3B chr7:2395055 5'GT 2395055 Upstream 48bp
chr7 2395008 2395008 1 + C T rs545964398 2395021 + 2395001 2395041 41 GACGAGCCCTCCTTCAGCGACCCCGAGGACTTCGTGGACGA GACGAGCTCTCCTTCAGCGACCCCGAGGACTTCGTGGACGA < 41bp 1 0.487912318300302 1 0.249700248241425 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395021 chr7:2395008 nonsynonymous SNV 0.946 1 8 hm5C_associated_SNPs_7100 0 0 1 0 1 EIF3B chr7:2395055 5'GT 2395055 Upstream 48bp
chr7 2419994 2419994 1 + C A rs530959610 2419977 + 2419957 2419997 41 CCGCGTGACTCCCGCCTCCTCCCTGTGCTCTCTGGCTCTGG CCGCGTGACTCCCGCCTCCTCCCTGTGCTCTCTGGCTATGG < 41bp 1 0.445308115572575 1 0.0962384641170502 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EIF3B ENSG00000106263 UTR3 Human protein_coding chr7:2419977 chr7:2419994 . . 0 38 hm5C_associated_SNPs_7103 0 0 1 0 2 EIF3B chr7:2419914 3'AG 2419914 Downstream 81bp
chr7 2419994 2419994 1 + C A rs530959610 2419977 + 2419957 2419997 41 CCGCGTGACTCCCGCCTCCTCCCTGTGCTCTCTGGCTCTGG CCGCGTGACTCCCGCCTCCTCCCTGTGCTCTCTGGCTATGG < 41bp 1 0.445308115572575 1 0.0962384641170502 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EIF3B ENSG00000106263 UTR3 Human protein_coding chr7:2419977 chr7:2419994 . . 0 38 hm5C_associated_SNPs_7103 0 0 1 0 2 EIF3B chr7:2419919 3'AG 2419919 Downstream 76bp
chr7 2472255 2472255 1 + C T rs200893373 2472246 + 2472226 2472266 41 GGAAGCTGAAGTGAGAGGCCCGGAGAGGGCCCAGCCCGCCC GGAAGCTGAAGTGAGAGGCCCGGAGAGGGTCCAGCCCGCCC < 41bp 1 0.739462600542563 1 0.623924493789673 experiment 0.521074798914874 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CHST12 ENSG00000136213 UTR5 Human protein_coding chr7:2472246 chr7:2472255 . . 0 30 hm5C_associated_SNPs_7104 0 0 1 0 1 CHST12 chr7:2472198 3'AG 2472198 Downstream 58bp
chr7 2686525 2686525 1 + C G rs148208032 2686507 + 2686487 2686527 41 GCCCTGCTGCTCCTGGGGGCCGCCGCCCTGGCCTGCCTCGC GCCCTGCTGCTCCTGGGGGCCGCCGCCCTGGCCTGCCTGGC < 41bp 1 0.50647285587042 1 0.761405348777771 experiment 0.98705428825916 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686507 chr7:2686525 synonymous SNV . 0 39 hm5C_associated_SNPs_7110 0 0 1 0 1 TTYH3 chr7:2686487 3'AG 2686487 Downstream 39bp
chr7 4260921 4260921 1 + C A rs138688738 4260905 + 4260885 4260925 41 CCTAGAGATGTCCTGGTCACCAAGTCCGCCTCTGAACTGAC CCTAGAGATGTCCTGGTCACCAAGTCCGCCTCTGAAATGAC < 41bp 1 0.200561166859641 1 0.495281249284744 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SDK1 ENSG00000146555 CDS Human protein_coding chr7:4260905 chr7:4260921 nonsynonymous SNV 0.748 4 37 hm5C_associated_SNPs_7114 0 0 0 0 2 SDK1 chr7:4260871 3'AG 4260871 Downstream 51bp
chr7 4260921 4260921 1 + C A rs138688738 4260905 + 4260885 4260925 41 CCTAGAGATGTCCTGGTCACCAAGTCCGCCTCTGAACTGAC CCTAGAGATGTCCTGGTCACCAAGTCCGCCTCTGAAATGAC < 41bp 1 0.200561166859641 1 0.495281249284744 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SDK1 ENSG00000146555 CDS Human protein_coding chr7:4260905 chr7:4260921 nonsynonymous SNV 0.748 4 37 hm5C_associated_SNPs_7114 0 0 0 0 2 SDK1 chr7:4260996 5'GT 4260996 Upstream 76bp
chr7 4794999 4794999 1 + C T rs112344773 4795002 + 4794982 4795022 41 CCCTACTACCGGACGGCCGACAAAGGCTGGCAGGTGAAGCC CCCTACTACCGGACGGCTGACAAAGGCTGGCAGGTGAAGCC < 41bp 1 0.31686514176513 1 0.682305216789246 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4795002 chr7:4794999 synonymous SNV . 0 18 hm5C_associated_SNPs_7164 0 0 1 0 1 FOXK1 chr7:4795014 5'GT 4795014 Upstream 16bp
chr7 4801825 4801825 1 + C T rs61733617 4801817 + 4801797 4801837 41 CTTCTTCCTCCACTCCAGCCCTCACCAGCCCTTTGCAGCTC CTTCTTCCTCCACTCCAGCCCTCACCAGTCCTTTGCAGCTC < 41bp 1 0.0817703662594379 1 0.0348775088787079 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4801817 chr7:4801825 synonymous SNV . 0 29 hm5C_associated_SNPs_7166 0 0 0 0 1 FOXK1 chr7:4801815 3'AG 4801815 Downstream 11bp
chr7 4830463 4830463 1 + G A rs11766611 4830446 + 4830426 4830466 41 TGCTGCCCTGCCCAGGTGTCCCCCCCAGGTGGTCACCGTGC TGCTGCCCTGCCCAGGTGTCCCCCCCAGGTGGTCACCATGC < 41bp 1 0.0829452378284073 1 0.0187576115131378 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4830446 chr7:4830463 nonsynonymous SNV 0.020 1 38 hm5C_associated_SNPs_7169 2 0 1 0 1 AP5Z1 chr7:4830518 5'GT 4830518 Upstream 56bp
chr7 5230037 5230037 1 + C T rs542906466 5230030 + 5230010 5230050 41 CGCGCCCTCCCCGGCCGGGCCCACTCGCCGCGCGCCCAGCC CGCGCCCTCCCCGGCCGGGCCCACTCGTCGCGCGCCCAGCC < 41bp 1 0.241623754197988 1 0.0525369346141815 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WIPI2 ENSG00000157954 UTR5 Human protein_coding chr7:5230030 chr7:5230037 . . 0 28 hm5C_associated_SNPs_7177 0 0 1 0 1 WIPI2 chr7:5230124 5'GT 5230124 Upstream 88bp
chr7 5230037 5230037 1 + C T rs542906466 5230031 + 5230011 5230051 41 GCGCCCTCCCCGGCCGGGCCCACTCGCCGCGCGCCCAGCCA GCGCCCTCCCCGGCCGGGCCCACTCGTCGCGCGCCCAGCCA < 41bp 1 0.445454212064337 1 0.0298338234424591 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WIPI2 ENSG00000157954 UTR5 Human protein_coding chr7:5230031 chr7:5230037 . . 0 27 hm5C_associated_SNPs_7178 0 0 1 0 1 WIPI2 chr7:5230124 5'GT 5230124 Upstream 88bp
chr7 5230037 5230037 1 + C T rs542906466 5230033 + 5230013 5230053 41 GCCCTCCCCGGCCGGGCCCACTCGCCGCGCGCCCAGCCATG GCCCTCCCCGGCCGGGCCCACTCGTCGCGCGCCCAGCCATG < 41bp 1 0.713722825627719 1 0.134775996208191 experiment 0.572554348744561 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WIPI2 ENSG00000157954 UTR5 Human protein_coding chr7:5230033 chr7:5230037 . . 0 25 hm5C_associated_SNPs_7179 0 0 1 0 1 WIPI2 chr7:5230124 5'GT 5230124 Upstream 88bp
chr7 5269314 5269314 1 + A G rs34104542 5269313 + 5269293 5269333 41 CTGCCCCTTAGTCACTCAGACATACGGCGCAGCTGCAGGAA CTGCCCCTTAGTCACTCAGACGTACGGCGCAGCTGCAGGAA < 41bp 1 0.154608013347909 1 0.185001134872437 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5269313 chr7:5269314 synonymous SNV . 0 22 hm5C_associated_SNPs_7180 0 0 1 0 3 WIPI2 chr7:5269239 3'AG 5269239 Downstream 76bp
chr7 5269314 5269314 1 + A G rs34104542 5269313 + 5269293 5269333 41 CTGCCCCTTAGTCACTCAGACATACGGCGCAGCTGCAGGAA CTGCCCCTTAGTCACTCAGACGTACGGCGCAGCTGCAGGAA < 41bp 1 0.154608013347909 1 0.185001134872437 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5269313 chr7:5269314 synonymous SNV . 0 22 hm5C_associated_SNPs_7180 0 0 1 0 3 WIPI2 chr7:5269336 5'GT 5269336 Upstream 23bp
chr7 5269314 5269314 1 + A G rs34104542 5269313 + 5269293 5269333 41 CTGCCCCTTAGTCACTCAGACATACGGCGCAGCTGCAGGAA CTGCCCCTTAGTCACTCAGACGTACGGCGCAGCTGCAGGAA < 41bp 1 0.154608013347909 1 0.185001134872437 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5269313 chr7:5269314 synonymous SNV . 0 22 hm5C_associated_SNPs_7180 0 0 1 0 3 WIPI2 chr7:5269369 5'GT 5269369 Upstream 56bp
chr7 5336805 5336805 1 + C T rs568441145 5336820 + 5336800 5336840 41 CACGACGTTGTCGCCGGGGACGTCCACTTCGTAAGTGCGCA CACGATGTTGTCGCCGGGGACGTCCACTTCGTAAGTGCGCA < 41bp 1 0.0818198879919686 1 0.144979387521744 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5336820 chr7:5336805 synonymous SNV . 0 6 hm5C_associated_SNPs_7182 0 0 0 0 1 SLC29A4 chr7:5336829 5'GT 5336829 Upstream 25bp
chr7 5336819 5336819 1 + A G rs376762145 5336820 + 5336800 5336840 41 CACGACGTTGTCGCCGGGGACGTCCACTTCGTAAGTGCGCA CACGACGTTGTCGCCGGGGGCGTCCACTTCGTAAGTGCGCA < 41bp 1 0.065690976142877 1 0.132944971323013 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5336820 chr7:5336819 nonsynonymous SNV 0.181 1 20 hm5C_associated_SNPs_7183 0 0 1 0 1 SLC29A4 chr7:5336829 5'GT 5336829 Upstream 11bp
chr7 5338890 5338890 1 + C T rs141970112 5338900 + 5338880 5338920 41 TGCACCGCTACGTGGTGGCGCGGGTGATCTGGGCCGACATG TGCACCGCTATGTGGTGGCGCGGGTGATCTGGGCCGACATG < 41bp 1 0.56939101860175 1 0.452680319547653 experiment 0.8612179627965 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5338900 chr7:5338890 synonymous SNV . 0 11 hm5C_associated_SNPs_7184 0 0 0 0 1 SLC29A4 chr7:5338871 3'AG 5338871 Downstream 20bp
chr7 5338899 5338899 1 + G A rs74819003 5338900 + 5338880 5338920 41 TGCACCGCTACGTGGTGGCGCGGGTGATCTGGGCCGACATG TGCACCGCTACGTGGTGGCACGGGTGATCTGGGCCGACATG < 41bp 1 0.606963255260241 1 0.254534423351288 experiment 0.786073489479518 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5338900 chr7:5338899 synonymous SNV . 0 20 hm5C_associated_SNPs_7185 0 0 0 0 1 SLC29A4 chr7:5338871 3'AG 5338871 Downstream 29bp
chr7 5644959 5644959 1 + G A rs140594742 5644976 + 5644956 5644996 41 GGCGACACTCCTGTGGACTTCTTCTTCGAGTTCTGCGACTA GGCAACACTCCTGTGGACTTCTTCTTCGAGTTCTGCGACTA < 41bp 1 0.233863216234803 1 0.150693386793137 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5644976 chr7:5644959 nonsynonymous SNV 0.882 1 4 hm5C_associated_SNPs_7186 0 0 1 1 1 FSCN1 chr7:5644903 3'AG 5644903 Downstream 57bp
chr7 6617237 6617237 1 + C T rs115316495 6617223 + 6617203 6617243 41 CTTTCCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCACCTC CTTTCCCCTTGTGTGTAGGGCCGCCGTCCCACCCTCACCTC < 41bp 1 0.344643563454604 1 0.138655841350555 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617223 chr7:6617237 . . 0 35 hm5C_associated_SNPs_7191 0 0 1 0 1 ZDHHC4 chr7:6617221 3'AG 6617221 Downstream 17bp
chr7 6617237 6617237 1 + C T rs115316495 6617224 + 6617204 6617244 41 TTTCCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCACCTCG TTTCCCCTTGTGTGTAGGGCCGCCGTCCCACCCTCACCTCG < 41bp 1 0.628309287275501 1 0.211697816848755 experiment 0.743381425448999 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617224 chr7:6617237 . . 0 34 hm5C_associated_SNPs_7192 0 0 1 0 1 ZDHHC4 chr7:6617221 3'AG 6617221 Downstream 17bp
chr7 6617237 6617237 1 + C T rs115316495 6617226 + 6617206 6617246 41 TCCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCACCTCGCC TCCCCTTGTGTGTAGGGCCGCCGTCCCACCCTCACCTCGCC < 41bp 1 0.109194259373896 1 0.127444833517075 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617226 chr7:6617237 . . 0 32 hm5C_associated_SNPs_7193 0 0 1 0 1 ZDHHC4 chr7:6617221 3'AG 6617221 Downstream 17bp
chr7 6617237 6617237 1 + C T rs115316495 6617227 + 6617207 6617247 41 CCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCACCTCGCCC CCCCTTGTGTGTAGGGCCGCCGTCCCACCCTCACCTCGCCC < 41bp 1 0.143191652068309 1 0.0711108446121216 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617227 chr7:6617237 . . 0 31 hm5C_associated_SNPs_7194 0 0 1 0 1 ZDHHC4 chr7:6617221 3'AG 6617221 Downstream 17bp
chr7 6617240 6617240 1 + C G rs572873463 6617223 + 6617203 6617243 41 CTTTCCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCACCTC CTTTCCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCAGCTC < 41bp 1 0.333270810386897 1 0.093106746673584 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617223 chr7:6617240 . . 0 38 hm5C_associated_SNPs_7195 0 0 1 0 1 ZDHHC4 chr7:6617221 3'AG 6617221 Downstream 20bp
chr7 6617240 6617240 1 + C G rs572873463 6617224 + 6617204 6617244 41 TTTCCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCACCTCG TTTCCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCAGCTCG < 41bp 1 0.629046427132655 1 0.155768603086472 experiment 0.74190714573469 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617224 chr7:6617240 . . 0 37 hm5C_associated_SNPs_7196 0 0 1 0 1 ZDHHC4 chr7:6617221 3'AG 6617221 Downstream 20bp
chr7 6617240 6617240 1 + C G rs572873463 6617226 + 6617206 6617246 41 TCCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCACCTCGCC TCCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCAGCTCGCC < 41bp 1 0.0869605864427489 1 0.0539598166942596 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617226 chr7:6617240 . . 0 35 hm5C_associated_SNPs_7197 0 0 1 0 1 ZDHHC4 chr7:6617221 3'AG 6617221 Downstream 20bp
chr7 6617240 6617240 1 + C G rs572873463 6617227 + 6617207 6617247 41 CCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCACCTCGCCC CCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCAGCTCGCCC < 41bp 1 0.167353972021474 1 0.0590359568595886 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617227 chr7:6617240 . . 0 34 hm5C_associated_SNPs_7198 0 0 1 0 1 ZDHHC4 chr7:6617221 3'AG 6617221 Downstream 20bp
chr7 6617247 6617247 1 + C G rs11559147 6617227 + 6617207 6617247 41 CCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCACCTCGCCC CCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCACCTCGCCG < 41bp 1 0.173852024062746 1 0.058589905500412 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617227 chr7:6617247 . . 0 41 hm5C_associated_SNPs_7199 0 0 1 0 1 ZDHHC4 chr7:6617221 3'AG 6617221 Downstream 27bp
chr7 6631414 6631414 1 + G T rs10260097 6631401 + 6631381 6631421 41 CAGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCT CAGCCCTCAAGGGAACAAAGCCGATGACAGCCGTATGAGCT < 41bp 1 0.154356010968678 1 0.270443230867386 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631401 chr7:6631414 synonymous SNV . 0 34 hm5C_associated_SNPs_7200 0 0 1 0 2 C7orf26 chr7:6631334 3'AG 6631334 Downstream 81bp
chr7 6631414 6631414 1 + G T rs10260097 6631401 + 6631381 6631421 41 CAGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCT CAGCCCTCAAGGGAACAAAGCCGATGACAGCCGTATGAGCT < 41bp 1 0.154356010968678 1 0.270443230867386 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631401 chr7:6631414 synonymous SNV . 0 34 hm5C_associated_SNPs_7200 0 0 1 0 2 C7orf26 chr7:6631498 5'GT 6631498 Upstream 85bp
chr7 6631414 6631414 1 + G T rs10260097 6631402 + 6631382 6631422 41 AGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCTT AGCCCTCAAGGGAACAAAGCCGATGACAGCCGTATGAGCTT < 41bp 1 0.452280309145778 1 0.488619714975357 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631402 chr7:6631414 synonymous SNV . 0 33 hm5C_associated_SNPs_7201 0 0 1 0 2 C7orf26 chr7:6631334 3'AG 6631334 Downstream 81bp
chr7 6631414 6631414 1 + G T rs10260097 6631402 + 6631382 6631422 41 AGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCTT AGCCCTCAAGGGAACAAAGCCGATGACAGCCGTATGAGCTT < 41bp 1 0.452280309145778 1 0.488619714975357 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631402 chr7:6631414 synonymous SNV . 0 33 hm5C_associated_SNPs_7201 0 0 1 0 2 C7orf26 chr7:6631498 5'GT 6631498 Upstream 85bp
chr7 6660831 6660831 1 + C T rs61745889 6660834 + 6660814 6660854 41 ACAGCGGCCAGCAGTCTCGGCCCCAGTGGGGGCCAGTGAAA ACAGCGGCCAGCAGTCTTGGCCCCAGTGGGGGCCAGTGAAA < 41bp 1 0.491272226364901 1 0.25109401345253 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF853 ENSG00000236609 CDS Human protein_coding chr7:6660834 chr7:6660831 nonsynonymous SNV 0.002 1 18 hm5C_associated_SNPs_7202 0 0 1 0 1 ZNF853 chr7:6660753 3'AG 6660753 Downstream 79bp
chr7 6660831 6660831 1 + C T rs61745889 6660835 + 6660815 6660855 41 CAGCGGCCAGCAGTCTCGGCCCCAGTGGGGGCCAGTGAAAT CAGCGGCCAGCAGTCTTGGCCCCAGTGGGGGCCAGTGAAAT < 41bp 1 0.146778957794167 1 0.571804702281952 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF853 ENSG00000236609 CDS Human protein_coding chr7:6660835 chr7:6660831 nonsynonymous SNV 0.002 1 17 hm5C_associated_SNPs_7203 0 0 1 0 1 ZNF853 chr7:6660753 3'AG 6660753 Downstream 79bp
chr7 6660831 6660831 1 + C T rs61745889 6660836 + 6660816 6660856 41 AGCGGCCAGCAGTCTCGGCCCCAGTGGGGGCCAGTGAAATC AGCGGCCAGCAGTCTTGGCCCCAGTGGGGGCCAGTGAAATC < 41bp 1 0.307722922798878 1 0.196472346782684 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF853 ENSG00000236609 CDS Human protein_coding chr7:6660836 chr7:6660831 nonsynonymous SNV 0.002 1 16 hm5C_associated_SNPs_7204 0 0 1 0 1 ZNF853 chr7:6660753 3'AG 6660753 Downstream 79bp
chr7 6660831 6660831 1 + C T rs61745889 6660837 + 6660817 6660857 41 GCGGCCAGCAGTCTCGGCCCCAGTGGGGGCCAGTGAAATCG GCGGCCAGCAGTCTTGGCCCCAGTGGGGGCCAGTGAAATCG < 41bp 1 0.466258435416865 1 0.715814828872681 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF853 ENSG00000236609 CDS Human protein_coding chr7:6660837 chr7:6660831 nonsynonymous SNV 0.002 1 15 hm5C_associated_SNPs_7205 0 0 1 0 1 ZNF853 chr7:6660753 3'AG 6660753 Downstream 79bp
chr7 6660831 6660831 1 + C T rs61745889 6660846 + 6660826 6660866 41 AGTCTCGGCCCCAGTGGGGGCCAGTGAAATCGCTGAGGAAA AGTCTTGGCCCCAGTGGGGGCCAGTGAAATCGCTGAGGAAA < 41bp 1 0.221600514606953 1 0.596356749534607 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF853 ENSG00000236609 CDS Human protein_coding chr7:6660846 chr7:6660831 nonsynonymous SNV 0.002 1 6 hm5C_associated_SNPs_7206 0 0 1 0 1 ZNF853 chr7:6660753 3'AG 6660753 Downstream 79bp
chr7 6660831 6660831 1 + C T rs61745889 6660847 + 6660827 6660867 41 GTCTCGGCCCCAGTGGGGGCCAGTGAAATCGCTGAGGAAAC GTCTTGGCCCCAGTGGGGGCCAGTGAAATCGCTGAGGAAAC < 41bp 1 0.259080243522784 1 0.81473571062088 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF853 ENSG00000236609 CDS Human protein_coding chr7:6660847 chr7:6660831 nonsynonymous SNV 0.002 1 5 hm5C_associated_SNPs_7207 0 0 1 0 1 ZNF853 chr7:6660753 3'AG 6660753 Downstream 79bp
chr7 12269417 12269417 1 + C A rs3173615 12269401 + 12269381 12269421 41 AAACAGTTATTGGAAAGGCACGCTTAAACAACATAACCATT AAACAGTTATTGGAAAGGCACGCTTAAACAACATAAACATT < 41bp 1 0.19289521151188 1 0.0455610752105713 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM106B ENSG00000106460 CDS Human protein_coding chr7:12269401 chr7:12269417 nonsynonymous SNV 0.988 2 37 hm5C_associated_SNPs_7213 0 1 1 0 1 TMEM106B chr7:12269445 5'GT 12269445 Upstream 29bp
chr7 16745716 16745716 1 + G T rs7780235 16745735 + 16745715 16745755 41 TGGCTCAACAAGCACAATACCTAGGTTACCACACACCACTT TTGCTCAACAAGCACAATACCTAGGTTACCACACACCACTT < 41bp 1 0.775085040740381 1 0.229031443595886 experiment 0.449829918519238 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BZW2 ENSG00000235837 ncRNA_intronic Human protein_coding chr7:16745735 chr7:16745716 . . 0 2 hm5C_associated_SNPs_7214 0 0 1 1 1 BZW2 chr7:16745685 3'AG 16745685 Downstream 32bp
chr7 16823095 16823095 1 + G A rs11491 16823094 + 16823074 16823114 41 GAACCAGAAAGACCCCCGCGCGAATCCTAGTGCATTCCTTT GAACCAGAAAGACCCCCGCGCAAATCCTAGTGCATTCCTTT < 41bp 1 0.150016847821721 1 0.101660639047623 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSPAN13 ENSG00000106537 CDS Human protein_coding chr7:16823094 chr7:16823095 synonymous SNV . 0 22 hm5C_associated_SNPs_7217 0 0 1 0 1 TSPAN13 chr7:16823042 3'AG 16823042 Downstream 54bp
chr7 23221750 23221750 1 + G C rs368129535 23221740 + 23221720 23221760 41 TTCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTG TTCTTCCTTCAAGGCCGGTGCCGCTTTGGACATCGGTGCTG < 41bp 1 0.412507583159109 1 0.175082236528397 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221740 chr7:23221750 nonsynonymous SNV 0.999 1 31 hm5C_associated_SNPs_7223 0 0 1 3 1 NUPL2 chr7:23221825 5'GT 23221825 Upstream 76bp
chr7 23221750 23221750 1 + G C rs368129535 23221741 + 23221721 23221761 41 TCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTGG TCTTCCTTCAAGGCCGGTGCCGCTTTGGACATCGGTGCTGG < 41bp 1 0.586129395149356 1 0.114789605140686 experiment 0.827741209701289 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221741 chr7:23221750 nonsynonymous SNV 0.999 1 30 hm5C_associated_SNPs_7224 0 0 1 3 1 NUPL2 chr7:23221825 5'GT 23221825 Upstream 76bp
chr7 23235483 23235483 1 + A G rs1728327 23235473 + 23235453 23235493 41 TTCAGGTTTTACAGACATTTCACCAGAGGAATTGAGGCTTG TTCAGGTTTTACAGACATTTCACCAGAGGAGTTGAGGCTTG < 41bp 1 0.726149534737341 1 0.81220281124115 experiment 0.547700930525318 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23235473 chr7:23235483 synonymous SNV . 0 31 hm5C_associated_SNPs_7225 0 0 1 0 2 NUPL2 chr7:23235458 3'AG 23235458 Downstream 26bp
chr7 23235483 23235483 1 + A G rs1728327 23235473 + 23235453 23235493 41 TTCAGGTTTTACAGACATTTCACCAGAGGAATTGAGGCTTG TTCAGGTTTTACAGACATTTCACCAGAGGAGTTGAGGCTTG < 41bp 1 0.726149534737341 1 0.81220281124115 experiment 0.547700930525318 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23235473 chr7:23235483 synonymous SNV . 0 31 hm5C_associated_SNPs_7225 0 0 1 0 2 NUPL2 chr7:23235534 5'GT 23235534 Upstream 52bp
chr7 26241087 26241087 1 + C T rs139133255 26241073 + 26241053 26241093 41 TCCGGTTTTGGCGCCAGCCGCTGAGGCTGCCAAGCAGAAAA TCCGGTTTTGGCGCCAGCCGCTGAGGCTGCCAAGTAGAAAA < 41bp 1 0.790543248100363 1 0.250611245632172 experiment 0.418913503799273 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CBX3 ENSG00000122565 UTR5 Human protein_coding chr7:26241073 chr7:26241087 . . 0 35 hm5C_associated_SNPs_7227 0 0 0 0 1 CBX3 chr7:26241181 5'GT 26241181 Upstream 95bp
chr7 27827103 27827103 1 + T A rs11540483 27827088 + 27827068 27827108 41 CCAAGCTTATGTCAGAGGTCCAGACTTTAAAAAATTTAGAT CCAAGCTTATGTCAGAGGTCCAGACTTTAAAAAATATAGAT < 41bp 1 0.1449688784135 1 0.321991413831711 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27827088 chr7:27827103 nonsynonymous SNV 1.000 0 36 hm5C_associated_SNPs_7228 0 0 1 0 1 TAX1BP1 chr7:27827037 3'AG 27827037 Downstream 67bp
chr7 30961790 30961790 1 + G A rs28362731 30961771 + 30961751 30961791 41 GCGTGCTGGCTACTACCGACCGGAGGCGCCGTGACCTTGGT GCGTGCTGGCTACTACCGACCGGAGGCGCCGTGACCTTGAT < 41bp 1 0.781836272275189 1 0.916855812072754 experiment 0.436327455449623 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AQP1 ENSG00000240583;ENSG00000250424 CDS Human other chr7:30961771 chr7:30961790 nonsynonymous SNV 0.124 1 40 hm5C_associated_SNPs_7240 0 0 1 0 1 AQP1 chr7:30961845 5'GT 30961845 Upstream 56bp
chr7 33014893 33014893 1 + C T rs202159628 33014888 + 33014868 33014908 41 GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCG GTTCAGATTCACACCTATTTCAAGCTCCCGAGTTGCCCTCG < 41bp 1 0.606703397186845 1 0.826075077056885 experiment 0.786593205626311 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014888 chr7:33014893 nonsynonymous SNV 0.985 4 26 hm5C_associated_SNPs_7246 0 0 0 0 2 FKBP9 chr7:33014794 3'AG 33014794 Downstream 100bp
chr7 33014893 33014893 1 + C T rs202159628 33014888 + 33014868 33014908 41 GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCG GTTCAGATTCACACCTATTTCAAGCTCCCGAGTTGCCCTCG < 41bp 1 0.606703397186845 1 0.826075077056885 experiment 0.786593205626311 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014888 chr7:33014893 nonsynonymous SNV 0.985 4 26 hm5C_associated_SNPs_7246 0 0 0 0 2 FKBP9 chr7:33014983 5'GT 33014983 Upstream 91bp
chr7 33014893 33014893 1 + C T rs202159628 33014892 + 33014872 33014912 41 AGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCGGACC AGATTCACACCTATTTCAAGCTCCCGAGTTGCCCTCGGACC < 41bp 1 0.223150121771052 1 0.32574200630188 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014892 chr7:33014893 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_7247 0 0 0 0 2 FKBP9 chr7:33014794 3'AG 33014794 Downstream 100bp
chr7 33014893 33014893 1 + C T rs202159628 33014892 + 33014872 33014912 41 AGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCGGACC AGATTCACACCTATTTCAAGCTCCCGAGTTGCCCTCGGACC < 41bp 1 0.223150121771052 1 0.32574200630188 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014892 chr7:33014893 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_7247 0 0 0 0 2 FKBP9 chr7:33014983 5'GT 33014983 Upstream 91bp
chr7 35943900 35943900 1 + T C rs148369403 35943897 + 35943877 35943917 41 AACAAGAAGAAAGGGAAGATCTTTTAAACTCTCTATTGACC AACAAGAAGAAAGGGAAGATCTTCTAAACTCTCTATTGACC < 41bp 1 0.131874326401855 1 0.132549971342087 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SEPT7 ENSG00000122545 CDS Human protein_coding chr7:35943897 chr7:35943900 synonymous SNV . 0 24 hm5C_associated_SNPs_7251 0 0 1 0 1 SEPT7 chr7:35943864 3'AG 35943864 Downstream 37bp
chr7 36445855 36445855 1 + A C rs61737563 36445868 + 36445848 36445888 41 CCCTCCCAGACCTCTGCTTTCAAATGCCTCGGCAACTCCAG CCCTCCCCGACCTCTGCTTTCAAATGCCTCGGCAACTCCAG < 41bp 1 0.528029370495431 1 0.391947448253632 experiment 0.943941259009139 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36445868 chr7:36445855 synonymous SNV . 0 8 hm5C_associated_SNPs_7253 1 0 1 0 1 ANLN chr7:36445790 3'AG 36445790 Downstream 66bp
chr7 36445856 36445856 1 + G A rs197367 36445868 + 36445848 36445888 41 CCCTCCCAGACCTCTGCTTTCAAATGCCTCGGCAACTCCAG CCCTCCCAAACCTCTGCTTTCAAATGCCTCGGCAACTCCAG < 41bp 1 0.486970358789547 1 0.31701922416687 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36445868 chr7:36445856 nonsynonymous SNV 0.004 0 9 hm5C_associated_SNPs_7254 1 0 1 0 1 ANLN chr7:36445790 3'AG 36445790 Downstream 67bp
chr7 36466571 36466571 1 + C G rs148635845 36466562 + 36466542 36466582 41 GGTCTTAGTGCTGTGCGAACCAGCAACTTCGCCCTTGTTGG GGTCTTAGTGCTGTGCGAACCAGCAACTTGGCCCTTGTTGG < 41bp 1 0.785157243031946 1 0.860233783721924 experiment 0.429685513936108 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36466562 chr7:36466571 nonsynonymous SNV 0.920 3 30 hm5C_associated_SNPs_7256 0 0 1 0 2 ANLN chr7:36466525 3'AG 36466525 Downstream 47bp
chr7 36466571 36466571 1 + C G rs148635845 36466562 + 36466542 36466582 41 GGTCTTAGTGCTGTGCGAACCAGCAACTTCGCCCTTGTTGG GGTCTTAGTGCTGTGCGAACCAGCAACTTGGCCCTTGTTGG < 41bp 1 0.785157243031946 1 0.860233783721924 experiment 0.429685513936108 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36466562 chr7:36466571 nonsynonymous SNV 0.920 3 30 hm5C_associated_SNPs_7256 0 0 1 0 2 ANLN chr7:36466637 5'GT 36466637 Upstream 67bp
chr7 36492101 36492101 1 + A G rs544329756 36492117 + 36492097 36492137 41 CTGCAGATACTAAAGAAGAGCGGGATCTCTGGATGCAAAAA CTGCGGATACTAAAGAAGAGCGGGATCTCTGGATGCAAAAA < 41bp 1 0.766964041488389 1 0.599901080131531 experiment 0.466071917023221 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36492117 chr7:36492101 synonymous SNV . 0 5 hm5C_associated_SNPs_7257 0 0 1 0 1 ANLN chr7:36492086 3'AG 36492086 Downstream 16bp
chr7 38217972 38217972 1 + C T rs147811966 38217964 + 38217944 38217984 41 CCCCTCAGGCCGGGGCGCGACCGCGGATCCGCAGTTCCCGG CCCCTCAGGCCGGGGCGCGACCGCGGATTCGCAGTTCCCGG < 41bp 1 0.712514888847966 1 0.666511714458466 experiment 0.574970222304068 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74773;RNA-BisSeq;Huh7;Control STARD3NL ENSG00000010270 UTR5 Human protein_coding chr7:38217964 chr7:38217972 . . 0 29 hm5C_associated_SNPs_7262 0 0 1 0 1 STARD3NL chr7:38218022 5'GT 38218022 Upstream 51bp
chr7 39991447 39991447 1 + C T rs3735137 39991428 + 39991408 39991448 41 AGCAGCTGGCGCCGCTCTCGCAGTCCCTACAGCCCTGTGCT AGCAGCTGGCGCCGCTCTCGCAGTCCCTACAGCCCTGTGTT < 41bp 1 0.240479802478269 1 0.779687166213989 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:39991428 chr7:39991447 nonsynonymous SNV 0.992 0 40 hm5C_associated_SNPs_7266 0 0 1 0 1 CDK13 chr7:39991451 5'GT 39991451 Upstream 5bp
chr7 43506113 43506113 1 + A C rs138489968 43506109 + 43506089 43506129 41 AATCACCTTGCTGCTGCAGTCCCCAGCGGTCAAGTTCATCA AATCACCTTGCTGCTGCAGTCCCCCGCGGTCAAGTTCATCA < 41bp 1 0.0876807765467729 1 0.0361987054347992 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HECW1 ENSG00000002746 CDS Human protein_coding chr7:43506109 chr7:43506113 synonymous SNV . 0 25 hm5C_associated_SNPs_7267 0 0 0 0 2 HECW1 chr7:43506046 3'AG 43506046 Downstream 68bp
chr7 43506113 43506113 1 + A C rs138489968 43506109 + 43506089 43506129 41 AATCACCTTGCTGCTGCAGTCCCCAGCGGTCAAGTTCATCA AATCACCTTGCTGCTGCAGTCCCCCGCGGTCAAGTTCATCA < 41bp 1 0.0876807765467729 1 0.0361987054347992 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HECW1 ENSG00000002746 CDS Human protein_coding chr7:43506109 chr7:43506113 synonymous SNV . 0 25 hm5C_associated_SNPs_7267 0 0 0 0 2 HECW1 chr7:43506167 5'GT 43506167 Upstream 55bp
chr7 43580831 43580831 1 + G A rs2304320 43580837 + 43580817 43580857 41 GACGCTTTCTTCACGAGGCCCTTCTACAAGGCACTCCTGAG GACGCTTTCTTCACAAGGCCCTTCTACAAGGCACTCCTGAG < 41bp 1 0.0332313660929603 1 0.104256421327591 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43580837 chr7:43580831 synonymous SNV . 0 15 hm5C_associated_SNPs_7268 0 0 0 0 2 HECW1 chr7:43580762 3'AG 43580762 Downstream 70bp
chr7 43580831 43580831 1 + G A rs2304320 43580837 + 43580817 43580857 41 GACGCTTTCTTCACGAGGCCCTTCTACAAGGCACTCCTGAG GACGCTTTCTTCACAAGGCCCTTCTACAAGGCACTCCTGAG < 41bp 1 0.0332313660929603 1 0.104256421327591 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43580837 chr7:43580831 synonymous SNV . 0 15 hm5C_associated_SNPs_7268 0 0 0 0 2 HECW1 chr7:43580860 5'GT 43580860 Upstream 30bp
chr7 43591832 43591832 1 + G A rs56111512 43591843 + 43591823 43591863 41 TGTAGACTCGAGGCTGGTGTCCGTGTTTGATGCCAGGGAGC TGTAGACTCAAGGCTGGTGTCCGTGTTTGATGCCAGGGAGC < 41bp 1 0.143803602998324 1 0.169981390237808 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43591843 chr7:43591832 synonymous SNV . 0 10 hm5C_associated_SNPs_7269 0 0 0 0 1 HECW1 chr7:43591821 3'AG 43591821 Downstream 12bp
chr7 43810764 43810764 1 + G A rs699512 43810765 + 43810745 43810785 41 GGAAGAGACCAAGATGAATGCAGAGGTGAGTTCTTTACAAA GGAAGAGACCAAGATGAATACAGAGGTGAGTTCTTTACAAA < 41bp 1 0.746155669871141 1 0.730075299739838 experiment 0.507688660257718 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BLVRA ENSG00000106605 CDS Human protein_coding chr7:43810765 chr7:43810764 nonsynonymous SNV 0.903 0 20 hm5C_associated_SNPs_7270 0 0 1 0 2 BLVRA chr7:43810737 3'AG 43810737 Downstream 28bp
chr7 43810764 43810764 1 + G A rs699512 43810765 + 43810745 43810785 41 GGAAGAGACCAAGATGAATGCAGAGGTGAGTTCTTTACAAA GGAAGAGACCAAGATGAATACAGAGGTGAGTTCTTTACAAA < 41bp 1 0.746155669871141 1 0.730075299739838 experiment 0.507688660257718 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BLVRA ENSG00000106605 CDS Human protein_coding chr7:43810765 chr7:43810764 nonsynonymous SNV 0.903 0 20 hm5C_associated_SNPs_7270 0 0 1 0 2 BLVRA chr7:43810769 5'GT 43810769 Upstream 6bp
chr7 44096482 44096482 1 + G A rs61735009 44096481 + 44096461 44096501 41 GAGAGTGGCCGCTTCCAGGACGTGGGACCCCAGGCCCCAGT GAGAGTGGCCGCTTCCAGGACATGGGACCCCAGGCCCCAGT < 41bp 1 0.658489284635936 1 0.315038979053497 experiment 0.683021430728128 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DBNL ENSG00000136279 CDS Human protein_coding chr7:44096481 chr7:44096482 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_7277 0 0 1 0 1 DBNL chr7:44096502 5'GT 44096502 Upstream 21bp
chr7 44099167 44099167 1 + C T rs147270019 44099175 + 44099155 44099195 41 GGAGCCGGCGCCCAGCACTCCTCCATGTCTGGTGCAGGCAG GGAGCCGGCGCCTAGCACTCCTCCATGTCTGGTGCAGGCAG < 41bp 1 0.764046051576911 1 0.975969672203064 experiment 0.471907896846177 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DBNL ENSG00000136279 CDS Human protein_coding chr7:44099175 chr7:44099167 synonymous SNV . 0 13 hm5C_associated_SNPs_7278 0 0 1 0 2 DBNL chr7:44099142 3'AG 44099142 Downstream 26bp
chr7 44099167 44099167 1 + C T rs147270019 44099175 + 44099155 44099195 41 GGAGCCGGCGCCCAGCACTCCTCCATGTCTGGTGCAGGCAG GGAGCCGGCGCCTAGCACTCCTCCATGTCTGGTGCAGGCAG < 41bp 1 0.764046051576911 1 0.975969672203064 experiment 0.471907896846177 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DBNL ENSG00000136279 CDS Human protein_coding chr7:44099175 chr7:44099167 synonymous SNV . 0 13 hm5C_associated_SNPs_7278 0 0 1 0 2 DBNL chr7:44099257 5'GT 44099257 Upstream 91bp
chr7 44747499 44747499 1 + G A rs2070606 44747498 + 44747478 44747518 41 GTATGCCGGCCGGGACCCAGCGGCTGCTCCAGCCACCGGCA GTATGCCGGCCGGGACCCAGCAGCTGCTCCAGCCACCGGCA < 41bp 1 0.712617494313416 1 0.74685001373291 experiment 0.574765011373168 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44747498 chr7:44747499 synonymous SNV . 0 22 hm5C_associated_SNPs_7279 0 0 1 0 1 OGDH chr7:44747478 3'AG 44747478 Downstream 22bp
chr7 44747514 44747514 1 + C A rs61756583 44747498 + 44747478 44747518 41 GTATGCCGGCCGGGACCCAGCGGCTGCTCCAGCCACCGGCA GTATGCCGGCCGGGACCCAGCGGCTGCTCCAGCCACAGGCA < 41bp 1 0.722974571583078 1 0.791908740997314 experiment 0.554050856833845 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44747498 chr7:44747514 synonymous SNV . 0 37 hm5C_associated_SNPs_7280 0 0 1 0 1 OGDH chr7:44747478 3'AG 44747478 Downstream 37bp
chr7 44802545 44802545 1 + C G rs77553241 44802539 + 44802519 44802559 41 GTCCGCTCGGTGCTGCAGGGCCTCCTCAAAAAGCGCCTCCT GTCCGCTCGGTGCTGCAGGGCCTCCTGAAAAAGCGCCTCCT < 41bp 1 0.03668019950024 1 0.0322462618350983 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44802539 chr7:44802545 synonymous SNV . 0 27 hm5C_associated_SNPs_7286 0 0 0 0 1 ZMIZ2 chr7:44802480 3'AG 44802480 Downstream 66bp
chr7 44836305 44836305 1 + A G rs373612022 44836315 + 44836295 44836335 41 CCGCCGAGGAAAACCGTGTACTATTAGCCATGGTCAACCCC CCGCCGAGGAGAACCGTGTACTATTAGCCATGGTCAACCCC < 41bp 1 0.312295094356041 1 0.0230961740016937 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIA ENSG00000196262 UTR5 Human protein_coding chr7:44836315 chr7:44836305 . . 0 11 hm5C_associated_SNPs_7288 0 0 1 0 1 PPIA chr7:44836392 5'GT 44836392 Upstream 88bp
chr7 44836314 44836314 1 + A G rs6850 44836315 + 44836295 44836335 41 CCGCCGAGGAAAACCGTGTACTATTAGCCATGGTCAACCCC CCGCCGAGGAAAACCGTGTGCTATTAGCCATGGTCAACCCC < 41bp 1 0.276920590851526 1 0.0236002802848816 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIA ENSG00000196262 UTR5 Human protein_coding chr7:44836315 chr7:44836314 . . 0 20 hm5C_associated_SNPs_7289 0 0 1 0 1 PPIA chr7:44836392 5'GT 44836392 Upstream 79bp
chr7 55259429 55259429 1 + G A rs41420046 55259432 + 55259412 55259452 41 GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGA GGCATGAACTACTTGGAAGACCGTCGCTTGGTGCACCGCGA < 41bp 1 0.117724082938203 1 0.267926454544067 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55259432 chr7:55259429 synonymous SNV . 0 18 hm5C_associated_SNPs_7293 1 0 1 0 1 EGFR chr7:55259412 3'AG 55259412 Downstream 18bp
chr7 55259450 55259450 1 + C A rs2229066 55259432 + 55259412 55259452 41 GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGA GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGAGA < 41bp 1 0.0610788395885902 1 0.230445683002472 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55259432 chr7:55259450 synonymous SNV . 0 39 hm5C_associated_SNPs_7294 0 0 1 0 1 EGFR chr7:55259412 3'AG 55259412 Downstream 39bp
chr7 55459563 55459563 1 + A G rs2049497 55459578 + 55459558 55459598 41 AAGACAGCTGATCCCCATGACTGCTCTGCTTATACTGGCTG AAGACGGCTGATCCCCATGACTGCTCTGCTTATACTGGCTG < 41bp 1 0.336272425840761 1 0.0496212244033813 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55459578 chr7:55459563 synonymous SNV . 0 6 hm5C_associated_SNPs_7297 0 0 1 0 2 LANCL2 chr7:55459486 3'AG 55459486 Downstream 78bp
chr7 55459563 55459563 1 + A G rs2049497 55459578 + 55459558 55459598 41 AAGACAGCTGATCCCCATGACTGCTCTGCTTATACTGGCTG AAGACGGCTGATCCCCATGACTGCTCTGCTTATACTGGCTG < 41bp 1 0.336272425840761 1 0.0496212244033813 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55459578 chr7:55459563 synonymous SNV . 0 6 hm5C_associated_SNPs_7297 0 0 1 0 2 LANCL2 chr7:55459603 5'GT 55459603 Upstream 41bp
chr7 56129511 56129511 1 + A G rs4927 56129510 + 56129490 56129530 41 TCAAGCAGAACATTCAGAATCAGGTCAGCTTGTGGGTGTGG TCAAGCAGAACATTCAGAATCGGGTCAGCTTGTGGGTGTGG < 41bp 1 0.635602970000093 1 0.27081835269928 experiment 0.728794059999815 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCT6A ENSG00000146731 CDS Human protein_coding chr7:56129510 chr7:56129511 synonymous SNV . 0 22 hm5C_associated_SNPs_7300 0 0 1 0 2 CCT6A chr7:56129440 3'AG 56129440 Downstream 72bp
chr7 56129511 56129511 1 + A G rs4927 56129510 + 56129490 56129530 41 TCAAGCAGAACATTCAGAATCAGGTCAGCTTGTGGGTGTGG TCAAGCAGAACATTCAGAATCGGGTCAGCTTGTGGGTGTGG < 41bp 1 0.635602970000093 1 0.27081835269928 experiment 0.728794059999815 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCT6A ENSG00000146731 CDS Human protein_coding chr7:56129510 chr7:56129511 synonymous SNV . 0 22 hm5C_associated_SNPs_7300 0 0 1 0 2 CCT6A chr7:56129542 5'GT 56129542 Upstream 32bp
chr7 56136270 56136270 1 + C T rs150976522 56136260 + 56136240 56136280 41 CCAGACAGCAGAGATGGTGACGGGCCTGTGCGGGAGGCGAC CCAGACAGCAGAGATGGTGACGGGCCTGTGTGGGAGGCGAC < 41bp 1 0.551462168012226 1 0.62284117937088 experiment 0.897075663975548 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUMF2 ENSG00000129103 CDS Human protein_coding chr7:56136260 chr7:56136270 nonsynonymous SNV 0.718 4 31 hm5C_associated_SNPs_7301 0 0 1 0 2 SUMF2 chr7:56136175 3'AG 56136175 Downstream 96bp
chr7 56136270 56136270 1 + C T rs150976522 56136260 + 56136240 56136280 41 CCAGACAGCAGAGATGGTGACGGGCCTGTGCGGGAGGCGAC CCAGACAGCAGAGATGGTGACGGGCCTGTGTGGGAGGCGAC < 41bp 1 0.551462168012226 1 0.62284117937088 experiment 0.897075663975548 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUMF2 ENSG00000129103 CDS Human protein_coding chr7:56136260 chr7:56136270 nonsynonymous SNV 0.718 4 31 hm5C_associated_SNPs_7301 0 0 1 0 2 SUMF2 chr7:56136331 5'GT 56136331 Upstream 62bp
chr7 64383794 64383794 1 + C T rs116865469 64383811 + 64383791 64383831 41 TTACTGCAACCTCTGCCCCTCGGGATTCAAGTGATTCTACT TTATTGCAACCTCTGCCCCTCGGGATTCAAGTGATTCTACT < 41bp 1 0.647008739051287 1 0.828400611877441 experiment 0.705982521897427 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF273 ENSG00000198039 UTR3 Human protein_coding chr7:64383811 chr7:64383794 . . 0 4 hm5C_associated_SNPs_7302 0 0 1 0 1 ZNF273 chr7:64383764 3'AG 64383764 Downstream 31bp
chr7 64531396 64531396 1 + T C rs571007451 64531408 + 64531388 64531428 41 GCATTTGCTGATGCGTTGCTCGTTATTCCCAAGGTGTGTAT GCATTTGCCGATGCGTTGCTCGTTATTCCCAAGGTGTGTAT < 41bp 1 0.442786586016807 1 0.064691960811615 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCT6P3 ENSG00000234585 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64531408 chr7:64531396 . . 0 9 hm5C_associated_SNPs_7303 0 0 1 0 1 CCT6P3 chr7:64531420 5'GT 64531420 Upstream 25bp
chr7 64531401 64531401 1 + C A rs184482762 64531408 + 64531388 64531428 41 GCATTTGCTGATGCGTTGCTCGTTATTCCCAAGGTGTGTAT GCATTTGCTGATGAGTTGCTCGTTATTCCCAAGGTGTGTAT < 41bp 1 0.418818049309363 1 0.0737591981887817 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCT6P3 ENSG00000234585 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64531408 chr7:64531401 . . 0 14 hm5C_associated_SNPs_7304 0 0 1 0 1 CCT6P3 chr7:64531420 5'GT 64531420 Upstream 20bp
chr7 69583191 69583191 1 + G A rs575812317 69583186 + 69583166 69583206 41 AGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA AGTGGAGAATCCAAGGGCTTCCACCAGAGCAGCTCTCGGGA < 41bp 1 0.0930339904781324 1 0.0841521918773651 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69583186 chr7:69583191 nonsynonymous SNV 0.993 3 26 hm5C_associated_SNPs_7325 0 0 0 0 2 AUTS2 chr7:69583118 3'AG 69583118 Downstream 74bp
chr7 69583191 69583191 1 + G A rs575812317 69583186 + 69583166 69583206 41 AGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA AGTGGAGAATCCAAGGGCTTCCACCAGAGCAGCTCTCGGGA < 41bp 1 0.0930339904781324 1 0.0841521918773651 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69583186 chr7:69583191 nonsynonymous SNV 0.993 3 26 hm5C_associated_SNPs_7325 0 0 0 0 2 AUTS2 chr7:69583219 5'GT 69583219 Upstream 29bp
chr7 72409197 72409197 1 + G A rs112174498 72409185 + 72409165 72409205 41 TCTAGCCCAGCCTCCTCCCGCTCCCAGACACCGGAGAGGCC TCTAGCCCAGCCTCCTCCCGCTCCCAGACACCAGAGAGGCC < 41bp 1 0.0960212111275914 1 0.291948795318604 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POM121 ENSG00000196313 CDS Human protein_coding chr7:72409185 chr7:72409197 synonymous SNV . 0 33 hm5C_associated_SNPs_7326 0 0 0 0 2 POM121 chr7:72409129 3'AG 72409129 Downstream 69bp
chr7 72409197 72409197 1 + G A rs112174498 72409185 + 72409165 72409205 41 TCTAGCCCAGCCTCCTCCCGCTCCCAGACACCGGAGAGGCC TCTAGCCCAGCCTCCTCCCGCTCCCAGACACCAGAGAGGCC < 41bp 1 0.0960212111275914 1 0.291948795318604 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POM121 ENSG00000196313 CDS Human protein_coding chr7:72409185 chr7:72409197 synonymous SNV . 0 33 hm5C_associated_SNPs_7326 0 0 0 0 2 POM121 chr7:72409220 5'GT 72409220 Upstream 24bp
chr7 73636018 73636018 1 + A G rs11544217 73636001 + 73635981 73636021 41 TGGAGTATTACAACTGGGGGCGGTTCTCGAAGCCCCCAGAA TGGAGTATTACAACTGGGGGCGGTTCTCGAAGCCCCCGGAA < 41bp 1 0.199237995307661 1 0.239814579486847 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636001 chr7:73636018 synonymous SNV . 0 38 hm5C_associated_SNPs_7335 0 0 0 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 52bp
chr7 73636018 73636018 1 + A G rs11544217 73636001 + 73635981 73636021 41 TGGAGTATTACAACTGGGGGCGGTTCTCGAAGCCCCCAGAA TGGAGTATTACAACTGGGGGCGGTTCTCGAAGCCCCCGGAA < 41bp 1 0.199237995307661 1 0.239814579486847 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636001 chr7:73636018 synonymous SNV . 0 38 hm5C_associated_SNPs_7335 0 0 0 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 5bp
chr7 73636018 73636018 1 + A G rs11544217 73636013 + 73635993 73636033 41 ACTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAG ACTGGGGGCGGTTCTCGAAGCCCCCGGAAGGTGAGGCGAAG < 41bp 1 0.175591553971188 1 0.178747236728668 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636013 chr7:73636018 synonymous SNV . 0 26 hm5C_associated_SNPs_7336 0 0 0 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 52bp
chr7 73636018 73636018 1 + A G rs11544217 73636013 + 73635993 73636033 41 ACTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAG ACTGGGGGCGGTTCTCGAAGCCCCCGGAAGGTGAGGCGAAG < 41bp 1 0.175591553971188 1 0.178747236728668 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636013 chr7:73636018 synonymous SNV . 0 26 hm5C_associated_SNPs_7336 0 0 0 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 5bp
chr7 73636018 73636018 1 + A G rs11544217 73636014 + 73635994 73636034 41 CTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGG CTGGGGGCGGTTCTCGAAGCCCCCGGAAGGTGAGGCGAAGG < 41bp 1 0.327088553366364 1 0.337703019380569 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636014 chr7:73636018 synonymous SNV . 0 25 hm5C_associated_SNPs_7337 0 0 0 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 52bp
chr7 73636018 73636018 1 + A G rs11544217 73636014 + 73635994 73636034 41 CTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGG CTGGGGGCGGTTCTCGAAGCCCCCGGAAGGTGAGGCGAAGG < 41bp 1 0.327088553366364 1 0.337703019380569 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636014 chr7:73636018 synonymous SNV . 0 25 hm5C_associated_SNPs_7337 0 0 0 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 5bp
chr7 73636018 73636018 1 + A G rs11544217 73636015 + 73635995 73636035 41 TGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGA TGGGGGCGGTTCTCGAAGCCCCCGGAAGGTGAGGCGAAGGA < 41bp 1 0.454750989810835 1 0.423249185085297 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636015 chr7:73636018 synonymous SNV . 0 24 hm5C_associated_SNPs_7338 0 0 0 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 52bp
chr7 73636018 73636018 1 + A G rs11544217 73636015 + 73635995 73636035 41 TGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGA TGGGGGCGGTTCTCGAAGCCCCCGGAAGGTGAGGCGAAGGA < 41bp 1 0.454750989810835 1 0.423249185085297 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636015 chr7:73636018 synonymous SNV . 0 24 hm5C_associated_SNPs_7338 0 0 0 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 5bp
chr7 73636018 73636018 1 + A G rs11544217 73636016 + 73635996 73636036 41 GGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGAC GGGGGCGGTTCTCGAAGCCCCCGGAAGGTGAGGCGAAGGAC < 41bp 1 0.641346370990299 1 0.758642792701721 experiment 0.717307258019402 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636016 chr7:73636018 synonymous SNV . 0 23 hm5C_associated_SNPs_7339 0 0 0 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 52bp
chr7 73636018 73636018 1 + A G rs11544217 73636016 + 73635996 73636036 41 GGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGAC GGGGGCGGTTCTCGAAGCCCCCGGAAGGTGAGGCGAAGGAC < 41bp 1 0.641346370990299 1 0.758642792701721 experiment 0.717307258019402 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636016 chr7:73636018 synonymous SNV . 0 23 hm5C_associated_SNPs_7339 0 0 0 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 5bp
chr7 73636018 73636018 1 + A G rs11544217 73636017 + 73635997 73636037 41 GGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGACA GGGGCGGTTCTCGAAGCCCCCGGAAGGTGAGGCGAAGGACA < 41bp 1 0.690306643424635 1 0.887604832649231 experiment 0.619386713150731 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636017 chr7:73636018 synonymous SNV . 0 22 hm5C_associated_SNPs_7340 0 0 0 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 52bp
chr7 73636018 73636018 1 + A G rs11544217 73636017 + 73635997 73636037 41 GGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGACA GGGGCGGTTCTCGAAGCCCCCGGAAGGTGAGGCGAAGGACA < 41bp 1 0.690306643424635 1 0.887604832649231 experiment 0.619386713150731 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636017 chr7:73636018 synonymous SNV . 0 22 hm5C_associated_SNPs_7340 0 0 0 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 5bp
chr7 73731906 73731906 1 + C T rs148561130 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AAGCCCAGCGGCCTGAAGCCCCCTGGCCGTGGGGGGAAGCA < 41bp 1 0.125195028577764 1 0.0798062086105347 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731906 synonymous SNV . 0 24 hm5C_associated_SNPs_7341 0 0 0 0 2 CLIP2 chr7:73731810 3'AG 73731810 Downstream 97bp
chr7 73731906 73731906 1 + C T rs148561130 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AAGCCCAGCGGCCTGAAGCCCCCTGGCCGTGGGGGGAAGCA < 41bp 1 0.125195028577764 1 0.0798062086105347 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731906 synonymous SNV . 0 24 hm5C_associated_SNPs_7341 0 0 0 0 2 CLIP2 chr7:73731997 5'GT 73731997 Upstream 92bp
chr7 73731906 73731906 1 + C T rs148561130 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC AGCCCAGCGGCCTGAAGCCCCCTGGCCGTGGGGGGAAGCAC < 41bp 1 0.194045156533928 1 0.0680532455444336 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731906 synonymous SNV . 0 23 hm5C_associated_SNPs_7342 0 0 0 0 2 CLIP2 chr7:73731810 3'AG 73731810 Downstream 97bp
chr7 73731906 73731906 1 + C T rs148561130 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC AGCCCAGCGGCCTGAAGCCCCCTGGCCGTGGGGGGAAGCAC < 41bp 1 0.194045156533928 1 0.0680532455444336 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731906 synonymous SNV . 0 23 hm5C_associated_SNPs_7342 0 0 0 0 2 CLIP2 chr7:73731997 5'GT 73731997 Upstream 92bp
chr7 73731906 73731906 1 + C T rs148561130 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT GCCCAGCGGCCTGAAGCCCCCTGGCCGTGGGGGGAAGCACT < 41bp 1 0.365983946581174 1 0.099048912525177 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731906 synonymous SNV . 0 22 hm5C_associated_SNPs_7343 0 0 0 0 2 CLIP2 chr7:73731810 3'AG 73731810 Downstream 97bp
chr7 73731906 73731906 1 + C T rs148561130 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT GCCCAGCGGCCTGAAGCCCCCTGGCCGTGGGGGGAAGCACT < 41bp 1 0.365983946581174 1 0.099048912525177 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731906 synonymous SNV . 0 22 hm5C_associated_SNPs_7343 0 0 0 0 2 CLIP2 chr7:73731997 5'GT 73731997 Upstream 92bp
chr7 73969541 73969541 1 + A G rs2301895 73969540 + 73969520 73969560 41 GAGGGAGTCAAAGAGCCCATCATGGATAGTCAAGGTACCCA GAGGGAGTCAAAGAGCCCATCGTGGATAGTCAAGGTACCCA < 41bp 1 0.456456612091031 1 0.309753596782684 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73969540 chr7:73969541 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_7345 0 0 1 0 2 GTF2IRD1 chr7:73969504 3'AG 73969504 Downstream 38bp
chr7 73969541 73969541 1 + A G rs2301895 73969540 + 73969520 73969560 41 GAGGGAGTCAAAGAGCCCATCATGGATAGTCAAGGTACCCA GAGGGAGTCAAAGAGCCCATCGTGGATAGTCAAGGTACCCA < 41bp 1 0.456456612091031 1 0.309753596782684 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73969540 chr7:73969541 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_7345 0 0 1 0 2 GTF2IRD1 chr7:73969553 5'GT 73969553 Upstream 13bp
chr7 75034255 75034255 1 + T C rs147290058 75034246 + 75034226 75034266 41 CACCCGTGGCCTGGTGGCCTCCCTGGACATGCAGCTGGAGC CACCCGTGGCCTGGTGGCCTCCCTGGACACGCAGCTGGAGC < 41bp 1 0.334973489504376 1 0.516846001148224 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM73 ENSG00000178809 CDS Human protein_coding chr7:75034246 chr7:75034255 nonsynonymous SNV 1.000 0 30 hm5C_associated_SNPs_7346 0 0 0 0 1 TRIM73 chr7:75034352 5'GT 75034352 Upstream 98bp
chr7 77539625 77539625 1 + T C rs61736552 77539642 + 77539622 77539662 41 AGATAACACACAAGAGGGAGCAGTTCAGAACCACGGTACAA AGACAACACACAAGAGGGAGCAGTTCAGAACCACGGTACAA < 41bp 1 0.247385888598772 1 0.174306452274323 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHTF2 ENSG00000006576 CDS Human protein_coding chr7:77539642 chr7:77539625 synonymous SNV . 0 4 hm5C_associated_SNPs_7374 0 0 1 0 1 PHTF2 chr7:77539562 3'AG 77539562 Downstream 64bp
chr7 79842157 79842157 1 + T C rs10241877 79842156 + 79842136 79842176 41 AGAAAAAATCAAAAAGAGCCCTCTCACTATATGCTATCCAG AGAAAAAATCAAAAAGAGCCCCCTCACTATATGCTATCCAG < 41bp 1 0.0523136022493544 1 0.0699186027050018 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79842156 chr7:79842157 synonymous SNV . 0 22 hm5C_associated_SNPs_7377 0 0 1 0 1 GNAI1 chr7:79842185 5'GT 79842185 Upstream 29bp
chr7 90233553 90233553 1 + C G rs17866277 90233548 + 90233528 90233568 41 ATAGCTTTGAAGAAAGATGACACCACCTTTGATGAGGTAGG ATAGCTTTGAAGAAAGATGACACCAGCTTTGATGAGGTAGG < 41bp 1 0.350984273928196 1 0.122409403324127 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90233548 chr7:90233553 nonsynonymous SNV 1.000 0 26 hm5C_associated_SNPs_7387 0 0 0 0 2 CDK14 chr7:90233532 3'AG 90233532 Downstream 22bp
chr7 90233553 90233553 1 + C G rs17866277 90233548 + 90233528 90233568 41 ATAGCTTTGAAGAAAGATGACACCACCTTTGATGAGGTAGG ATAGCTTTGAAGAAAGATGACACCAGCTTTGATGAGGTAGG < 41bp 1 0.350984273928196 1 0.122409403324127 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90233548 chr7:90233553 nonsynonymous SNV 1.000 0 26 hm5C_associated_SNPs_7387 0 0 0 0 2 CDK14 chr7:90233563 5'GT 90233563 Upstream 11bp
chr7 91622303 91622303 1 + G C rs144888041 91622287 + 91622267 91622307 41 GATGATGGAAAGTGAGTTGGCTGGGAAGCAGCATGAGATTG GATGATGGAAAGTGAGTTGGCTGGGAAGCAGCATGACATTG < 41bp 1 0.756888487194438 1 0.393604457378387 experiment 0.486223025611124 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91622287 chr7:91622303 nonsynonymous SNV 1.000 0 37 hm5C_associated_SNPs_7388 5 0 1 0 1 AKAP9 chr7:91622369 5'GT 91622369 Upstream 67bp
chr7 91622303 91622303 1 + G C rs144888041 91622295 + 91622275 91622315 41 AAAGTGAGTTGGCTGGGAAGCAGCATGAGATTGAAGAGCTA AAAGTGAGTTGGCTGGGAAGCAGCATGACATTGAAGAGCTA < 41bp 1 0.676723176405635 1 0.727997422218323 experiment 0.646553647188731 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91622295 chr7:91622303 nonsynonymous SNV 1.000 0 29 hm5C_associated_SNPs_7389 5 0 1 0 1 AKAP9 chr7:91622369 5'GT 91622369 Upstream 67bp
chr7 91622303 91622303 1 + G C rs144888041 91622298 + 91622278 91622318 41 GTGAGTTGGCTGGGAAGCAGCATGAGATTGAAGAGCTAAAC GTGAGTTGGCTGGGAAGCAGCATGACATTGAAGAGCTAAAC < 41bp 1 0.430714280703727 1 0.447132378816605 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91622298 chr7:91622303 nonsynonymous SNV 1.000 0 26 hm5C_associated_SNPs_7390 5 0 1 0 1 AKAP9 chr7:91622369 5'GT 91622369 Upstream 67bp
chr7 91714870 91714870 1 + A G rs201958512 91714852 + 91714832 91714872 41 TGAAGGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATA TGAAGGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTGTA < 41bp 1 0.265544762863167 1 0.0507204234600067 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714852 chr7:91714870 nonsynonymous SNV 0.467 0 39 hm5C_associated_SNPs_7391 1 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 62bp
chr7 91714870 91714870 1 + A G rs201958512 91714856 + 91714836 91714876 41 GGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATAGTGA GGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTGTAGTGA < 41bp 1 0.429409075487744 1 0.107188999652863 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714856 chr7:91714870 nonsynonymous SNV 0.467 0 35 hm5C_associated_SNPs_7392 1 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 62bp
chr7 91714870 91714870 1 + A G rs201958512 91714864 + 91714844 91714884 41 GGTGCTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGG GGTGCTTTCTCTCACTGAGTCTCCCTGTAGTGATGGAGAGG < 41bp 1 0.210452970025075 1 0.314582973718643 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714864 chr7:91714870 nonsynonymous SNV 0.467 0 27 hm5C_associated_SNPs_7393 1 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 62bp
chr7 91714870 91714870 1 + A G rs201958512 91714867 + 91714847 91714887 41 GCTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGGACC GCTTTCTCTCACTGAGTCTCCCTGTAGTGATGGAGAGGACC < 41bp 1 0.0397416145510948 1 0.0906060039997101 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714867 chr7:91714870 nonsynonymous SNV 0.467 0 24 hm5C_associated_SNPs_7394 1 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 62bp
chr7 91714870 91714870 1 + A G rs201958512 91714868 + 91714848 91714888 41 CTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGGACCA CTTTCTCTCACTGAGTCTCCCTGTAGTGATGGAGAGGACCA < 41bp 1 0.335828845186669 1 0.169890075922012 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714868 chr7:91714870 nonsynonymous SNV 0.467 0 23 hm5C_associated_SNPs_7395 1 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 62bp
chr7 92020515 92020515 1 + G A rs79306962 92020521 + 92020501 92020541 41 GAAGACCTTGCCCAGAAAGTCAATAGGCCTTACCTTCGCAC GAAGACCTTGCCCAAAAAGTCAATAGGCCTTACCTTCGCAC < 41bp 1 0.554015248530558 1 0.251896888017654 experiment 0.891969502938885 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:92020521 chr7:92020515 synonymous SNV . 0 15 hm5C_associated_SNPs_7396 0 0 1 0 1 ANKIB1 chr7:92020480 3'AG 92020480 Downstream 36bp
chr7 94057007 94057007 1 + C T rs34691365 94057027 + 94057007 94057047 41 CGATGGAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCAC TGATGGAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCAC < 41bp 1 0.119116859684836 1 0.0228131115436554 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057027 chr7:94057007 synonymous SNV . 0 1 hm5C_associated_SNPs_7401 3 0 0 0 1 COL1A2 chr7:94056939 3'AG 94056939 Downstream 69bp
chr7 98528420 98528420 1 + A G rs113886181 98528424 + 98528404 98528444 41 AGACATTCCTGAAAGCACTTCTCTTTGTCATGATGGACTTA AGACATTCCTGAAAGCGCTTCTCTTTGTCATGATGGACTTA < 41bp 1 0.0398584816230933 1 0.0929222106933594 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98528424 chr7:98528420 synonymous SNV . 0 17 hm5C_associated_SNPs_7411 0 0 1 0 1 TRRAP chr7:98528453 5'GT 98528453 Upstream 34bp
chr7 98609780 98609780 1 + G A rs75387850 98609794 + 98609774 98609814 41 TCTCTCGGCCGCCGGGCAGCCAGAGAACATGGACAGCCAGC TCTCTCAGCCGCCGGGCAGCCAGAGAACATGGACAGCCAGC < 41bp 1 0.329498795301472 1 0.847151756286621 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98609794 chr7:98609780 synonymous SNV . 0 7 hm5C_associated_SNPs_7412 0 0 1 0 1 TRRAP chr7:98609694 3'AG 98609694 Downstream 87bp
chr7 98609783 98609783 1 + C T rs219817 98609794 + 98609774 98609814 41 TCTCTCGGCCGCCGGGCAGCCAGAGAACATGGACAGCCAGC TCTCTCGGCTGCCGGGCAGCCAGAGAACATGGACAGCCAGC < 41bp 1 0.32005075022844 1 0.868319988250732 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98609794 chr7:98609783 synonymous SNV . 0 10 hm5C_associated_SNPs_7413 0 0 1 0 1 TRRAP chr7:98609694 3'AG 98609694 Downstream 90bp
chr7 98630650 98630650 1 - C T rs150893399 98630662 - 98630642 98630682 41 AACCTTCCGAAGGCCCATACCTGGTAAGCACCGCGGCCAGG AACCTTCCGAAGGCCCATACCTGGTAAGCACCACGGCCAGG < 41bp 1 0.667310227855243 1 0.110690146684647 experiment 0.665379544289515 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LOC101927550 ENSG00000242687 ncRNA_exonic Human protein_coding chr7:98630662 chr7:98630650 . . 0 33 hm5C_associated_SNPs_7414 0 0 1 0 2 SMURF1 chr7:98630735 3'AG 98630735 Downstream 86bp
chr7 98630650 98630650 1 - C T rs150893399 98630662 - 98630642 98630682 41 AACCTTCCGAAGGCCCATACCTGGTAAGCACCGCGGCCAGG AACCTTCCGAAGGCCCATACCTGGTAAGCACCACGGCCAGG < 41bp 1 0.667310227855243 1 0.110690146684647 experiment 0.665379544289515 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LOC101927550 ENSG00000242687 ncRNA_exonic Human protein_coding chr7:98630662 chr7:98630650 . . 0 33 hm5C_associated_SNPs_7414 0 0 1 0 2 SMURF1 chr7:98630744 3'AG 98630744 Downstream 95bp
chr7 99050039 99050039 1 + G A rs17854665 99050038 + 99050018 99050058 41 CACCGAGCAGCCCCCACTGCCGCAGCAGACACAGCCTCCAG CACCGAGCAGCCCCCACTGCCACAGCAGACACAGCCTCCAG < 41bp 1 0.70109606805615 1 0.475550085306168 experiment 0.597807863887701 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99050038 chr7:99050039 nonsynonymous SNV 0.967 1 22 hm5C_associated_SNPs_7415 0 0 0 0 2 CPSF4 chr7:99049991 3'AG 99049991 Downstream 49bp
chr7 99050039 99050039 1 + G A rs17854665 99050038 + 99050018 99050058 41 CACCGAGCAGCCCCCACTGCCGCAGCAGACACAGCCTCCAG CACCGAGCAGCCCCCACTGCCACAGCAGACACAGCCTCCAG < 41bp 1 0.70109606805615 1 0.475550085306168 experiment 0.597807863887701 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99050038 chr7:99050039 nonsynonymous SNV 0.967 1 22 hm5C_associated_SNPs_7415 0 0 0 0 2 CPSF4 chr7:99050063 5'GT 99050063 Upstream 25bp
chr7 99156326 99156326 1 + C G rs376093132 99156310 + 99156290 99156330 41 GGAAGTGCCACCGAGAAGCGCCGGCCTCGGGGCTGTCTACA GGAAGTGCCACCGAGAAGCGCCGGCCTCGGGGCTGTGTACA < 41bp 1 0.42836460739525 1 0.778043210506439 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control ZNF655 ENSG00000197343;ENSG00000272647 UTR5 Human other chr7:99156310 chr7:99156326 . . 0 37 hm5C_associated_SNPs_7416 0 0 1 0 1 ZNF655 chr7:99156410 5'GT 99156410 Upstream 85bp
chr7 99159522 99159522 1 + C A rs141089610 99159535 + 99159515 99159555 41 ACCTGTTCCTCAGGTGCCTGCTCTTCCCCGTGAGGGAAGCC ACCTGTTACTCAGGTGCCTGCTCTTCCCCGTGAGGGAAGCC < 41bp 1 0.216555265306039 1 0.144637674093246 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF655 ENSG00000197343 CDS Human protein_coding chr7:99159535 chr7:99159522 nonsynonymous SNV 0.999 0 8 hm5C_associated_SNPs_7417 0 0 1 0 2 ZNF655 chr7:99159511 3'AG 99159511 Downstream 12bp
chr7 99159522 99159522 1 + C A rs141089610 99159535 + 99159515 99159555 41 ACCTGTTCCTCAGGTGCCTGCTCTTCCCCGTGAGGGAAGCC ACCTGTTACTCAGGTGCCTGCTCTTCCCCGTGAGGGAAGCC < 41bp 1 0.216555265306039 1 0.144637674093246 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF655 ENSG00000197343 CDS Human protein_coding chr7:99159535 chr7:99159522 nonsynonymous SNV 0.999 0 8 hm5C_associated_SNPs_7417 0 0 1 0 2 ZNF655 chr7:99159596 5'GT 99159596 Upstream 75bp
chr7 99627504 99627504 1 + C G rs148669042 99627493 + 99627473 99627513 41 TCCTCCCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCC TCCTCCCCCAGCTCTTCCTGCTGCCCACATTGCTGCACCCC < 41bp 1 0.284315702830375 1 0.229211270809174 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627493 chr7:99627504 nonsynonymous SNV 0.486 2 32 hm5C_associated_SNPs_7420 0 0 1 0 2 ZKSCAN1 chr7:99627484 3'AG 99627484 Downstream 21bp
chr7 99627504 99627504 1 + C G rs148669042 99627493 + 99627473 99627513 41 TCCTCCCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCC TCCTCCCCCAGCTCTTCCTGCTGCCCACATTGCTGCACCCC < 41bp 1 0.284315702830375 1 0.229211270809174 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627493 chr7:99627504 nonsynonymous SNV 0.486 2 32 hm5C_associated_SNPs_7420 0 0 1 0 2 ZKSCAN1 chr7:99627575 5'GT 99627575 Upstream 72bp
chr7 99627504 99627504 1 + C G rs148669042 99627498 + 99627478 99627518 41 CCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCCCTCAT CCCCAGCTCTTCCTGCTGCCCACATTGCTGCACCCCCTCAT < 41bp 1 0.567850986705861 1 0.328889906406403 experiment 0.864298026588279 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627498 chr7:99627504 nonsynonymous SNV 0.486 2 27 hm5C_associated_SNPs_7421 0 0 1 0 2 ZKSCAN1 chr7:99627484 3'AG 99627484 Downstream 21bp
chr7 99627504 99627504 1 + C G rs148669042 99627498 + 99627478 99627518 41 CCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCCCTCAT CCCCAGCTCTTCCTGCTGCCCACATTGCTGCACCCCCTCAT < 41bp 1 0.567850986705861 1 0.328889906406403 experiment 0.864298026588279 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627498 chr7:99627504 nonsynonymous SNV 0.486 2 27 hm5C_associated_SNPs_7421 0 0 1 0 2 ZKSCAN1 chr7:99627575 5'GT 99627575 Upstream 72bp
chr7 99627508 99627508 1 + C T rs138748181 99627493 + 99627473 99627513 41 TCCTCCCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCC TCCTCCCCCAGCTCTTCCTGCTGCCCACATTCCTGTACCCC < 41bp 1 0.228377679334543 1 0.17718106508255 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627493 chr7:99627508 nonsynonymous SNV 0.452 0 36 hm5C_associated_SNPs_7422 0 0 1 0 2 ZKSCAN1 chr7:99627484 3'AG 99627484 Downstream 25bp
chr7 99627508 99627508 1 + C T rs138748181 99627493 + 99627473 99627513 41 TCCTCCCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCC TCCTCCCCCAGCTCTTCCTGCTGCCCACATTCCTGTACCCC < 41bp 1 0.228377679334543 1 0.17718106508255 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627493 chr7:99627508 nonsynonymous SNV 0.452 0 36 hm5C_associated_SNPs_7422 0 0 1 0 2 ZKSCAN1 chr7:99627575 5'GT 99627575 Upstream 68bp
chr7 99627508 99627508 1 + C T rs138748181 99627498 + 99627478 99627518 41 CCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCCCTCAT CCCCAGCTCTTCCTGCTGCCCACATTCCTGTACCCCCTCAT < 41bp 1 0.462030181580825 1 0.151401489973068 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627498 chr7:99627508 nonsynonymous SNV 0.452 0 31 hm5C_associated_SNPs_7423 0 0 1 0 2 ZKSCAN1 chr7:99627484 3'AG 99627484 Downstream 25bp
chr7 99627508 99627508 1 + C T rs138748181 99627498 + 99627478 99627518 41 CCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCCCTCAT CCCCAGCTCTTCCTGCTGCCCACATTCCTGTACCCCCTCAT < 41bp 1 0.462030181580825 1 0.151401489973068 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627498 chr7:99627508 nonsynonymous SNV 0.452 0 31 hm5C_associated_SNPs_7423 0 0 1 0 2 ZKSCAN1 chr7:99627575 5'GT 99627575 Upstream 68bp
chr7 99701297 99701297 1 + G A rs113020957 99701304 + 99701284 99701324 41 GCCGCCCCGTCCTGTCCAGTCGCTCTGACCAGGTGAGGGAA GCCGCCCCGTCCTATCCAGTCGCTCTGACCAGGTGAGGGAA < 41bp 1 0.398284360356705 1 0.180477470159531 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99701304 chr7:99701297 synonymous SNV . 0 14 hm5C_associated_SNPs_7424 0 0 1 0 2 AP4M1 chr7:99701235 3'AG 99701235 Downstream 63bp
chr7 99701297 99701297 1 + G A rs113020957 99701304 + 99701284 99701324 41 GCCGCCCCGTCCTGTCCAGTCGCTCTGACCAGGTGAGGGAA GCCGCCCCGTCCTATCCAGTCGCTCTGACCAGGTGAGGGAA < 41bp 1 0.398284360356705 1 0.180477470159531 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99701304 chr7:99701297 synonymous SNV . 0 14 hm5C_associated_SNPs_7424 0 0 1 0 2 AP4M1 chr7:99701315 5'GT 99701315 Upstream 19bp
chr7 99747130 99747130 1 + G A rs12878 99747129 + 99747109 99747149 41 CTTTACCCACTAGACTTCTGCGCTGACCCAGGGGCTGGAGC CTTTACCCACTAGACTTCTGCACTGACCCAGGGGCTGGAGC < 41bp 1 0.256856946398949 1 0.0466145277023315 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LAMTOR4 ENSG00000188186 CDS Human protein_coding chr7:99747129 chr7:99747130 synonymous SNV . 0 22 hm5C_associated_SNPs_7436 0 0 1 0 2 LAMTOR4 chr7:99747122 3'AG 99747122 Downstream 9bp
chr7 99747130 99747130 1 + G A rs12878 99747129 + 99747109 99747149 41 CTTTACCCACTAGACTTCTGCGCTGACCCAGGGGCTGGAGC CTTTACCCACTAGACTTCTGCACTGACCCAGGGGCTGGAGC < 41bp 1 0.256856946398949 1 0.0466145277023315 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LAMTOR4 ENSG00000188186 CDS Human protein_coding chr7:99747129 chr7:99747130 synonymous SNV . 0 22 hm5C_associated_SNPs_7436 0 0 1 0 2 LAMTOR4 chr7:99747202 5'GT 99747202 Upstream 73bp
chr7 99751521 99751521 1 + G A rs11540426 99751531 + 99751511 99751551 41 TGCTGGTGACGGTGTCAGGACAGAGGGTGTTTGTGGTGAAG TGCTGGTGACAGTGTCAGGACAGAGGGTGTTTGTGGTGAAG < 41bp 1 0.643947043935416 1 0.485243827104568 experiment 0.712105912129168 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMTOR4 ENSG00000188186 CDS Human protein_coding chr7:99751531 chr7:99751521 synonymous SNV . 0 11 hm5C_associated_SNPs_7437 0 0 1 0 1 LAMTOR4 chr7:99751490 3'AG 99751490 Downstream 32bp
chr7 99751576 99751576 1 + A C rs115350338 99751560 + 99751540 99751580 41 TTTGTGGTGAAGAGGCAGAACCGAGGTCGGGAGCCCATTGA TTTGTGGTGAAGAGGCAGAACCGAGGTCGGGAGCCCCTTGA < 41bp 1 0.72878245631799 1 0.503362715244293 experiment 0.54243508736402 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMTOR4 ENSG00000188186 CDS Human protein_coding chr7:99751560 chr7:99751576 nonsynonymous SNV 0.986 2 37 hm5C_associated_SNPs_7438 0 0 1 0 1 LAMTOR4 chr7:99751490 3'AG 99751490 Downstream 87bp
chr7 100151719 100151719 1 + G A rs61742738 100151721 + 100151701 100151741 41 TCCTTCTCCTCCAAGCCCGTCAGTCAGTCTCACGCTCGGAC TCCTTCTCCTCCAAGCCCATCAGTCAGTCTCACGCTCGGAC < 41bp 1 0.0575716914979123 1 0.107847929000854 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGFG2 ENSG00000106351 CDS Human protein_coding chr7:100151721 chr7:100151719 nonsynonymous SNV 0.039 0 19 hm5C_associated_SNPs_7443 0 0 1 0 1 AGFG2 chr7:100151716 3'AG 100151716 Downstream 4bp
chr7 100200130 100200130 1 + C G rs140507217 100200134 + 100200114 100200154 41 CCCTCCTCACTGCCTGCGCCCTGCTGCCTTTTGCCCAGGGC CCCTCCTCACTGCCTGGGCCCTGCTGCCTTTTGCCCAGGGC < 41bp 1 0.262702583479263 1 0.123445093631744 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100200134 chr7:100200130 nonsynonymous SNV 0.979 0 17 hm5C_associated_SNPs_7444 0 0 1 0 1 PCOLCE chr7:100200174 5'GT 100200174 Upstream 45bp
chr7 100334903 100334903 1 + C T rs114183970 100334885 + 100334865 100334905 41 GTCCCCTTATCCTCTTGCAGCTGATGTTTGAGGGAACACGG GTCCCCTTATCCTCTTGCAGCTGATGTTTGAGGGAACATGG < 41bp 1 0.16986167893911 1 0.064841240644455 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZAN ENSG00000146839 CDS Human protein_coding chr7:100334885 chr7:100334903 nonsynonymous SNV 0.426 0 39 hm5C_associated_SNPs_7456 0 0 0 0 2 ZAN chr7:100334885 3'AG 100334885 Downstream 19bp
chr7 100334903 100334903 1 + C T rs114183970 100334885 + 100334865 100334905 41 GTCCCCTTATCCTCTTGCAGCTGATGTTTGAGGGAACACGG GTCCCCTTATCCTCTTGCAGCTGATGTTTGAGGGAACATGG < 41bp 1 0.16986167893911 1 0.064841240644455 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZAN ENSG00000146839 CDS Human protein_coding chr7:100334885 chr7:100334903 nonsynonymous SNV 0.426 0 39 hm5C_associated_SNPs_7456 0 0 0 0 2 ZAN chr7:100334972 5'GT 100334972 Upstream 70bp
chr7 100484529 100484529 1 + G A rs572548566 100484519 + 100484499 100484539 41 GGGGAGCAGCGGGGGCGCTCCTCCTGAGGAGCCTCCTAAGG GGGGAGCAGCGGGGGCGCTCCTCCTGAGGAACCTCCTAAGG < 41bp 1 0.69802735373511 1 0.777493357658386 experiment 0.603945292529779 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100484519 chr7:100484529 synonymous SNV . 0 31 hm5C_associated_SNPs_7459 0 0 1 0 1 SRRT chr7:100484589 5'GT 100484589 Upstream 61bp
chr7 100731321 100731321 1 + G A rs371843986 100731332 + 100731312 100731352 41 CGCTAGCCCGGCTGCGGGAGCAGGCGGCCCGGGTGGGGACT CGCTAGCCCAGCTGCGGGAGCAGGCGGCCCGGGTGGGGACT < 41bp 1 0.641602506492997 1 0.898771524429321 experiment 0.716794987014006 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM56 ENSG00000169871 CDS Human protein_coding chr7:100731332 chr7:100731321 nonsynonymous SNV 0.037 0 10 hm5C_associated_SNPs_7461 0 0 1 0 1 TRIM56 chr7:100731409 5'GT 100731409 Upstream 89bp
chr7 100775298 100775298 1 + C T rs2227670 100775301 + 100775281 100775321 41 CTCTTCCACAAATCAGACGGCAGCACTGTCTCTGTGCCCAT CTCTTCCACAAATCAGATGGCAGCACTGTCTCTGTGCCCAT < 41bp 1 0.55394758545135 1 0.168195784091949 experiment 0.892104829097299 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100775301 chr7:100775298 synonymous SNV . 0 18 hm5C_associated_SNPs_7468 0 0 1 0 1 SERPINE1 chr7:100775350 5'GT 100775350 Upstream 53bp
chr7 100861475 100861475 1 + C T rs10215517 100861474 + 100861454 100861494 41 CTTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACT CTTCCGACAGTTGTGTTGTGCTAATGGTGGAGAAGAAAACT < 41bp 1 0.217668319544084 1 0.126967191696167 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861474 chr7:100861475 . . 0 22 hm5C_associated_SNPs_7471 0 0 1 4 1 ZNHIT1 chr7:100861498 5'GT 100861498 Upstream 24bp
chr7 100861476 100861476 1 + A G rs58033606 100861474 + 100861454 100861494 41 CTTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACT CTTCCGACAGTTGTGTTGTGCCGATGGTGGAGAAGAAAACT < 41bp 1 0.176258731468288 1 0.360364556312561 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861474 chr7:100861476 . . 0 23 hm5C_associated_SNPs_7472 0 0 1 4 1 ZNHIT1 chr7:100861498 5'GT 100861498 Upstream 23bp
chr7 100861476 100861476 1 + A G rs58033606 100861475 + 100861455 100861495 41 TTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACTT TTCCGACAGTTGTGTTGTGCCGATGGTGGAGAAGAAAACTT < 41bp 1 0.494776661053751 1 0.710920035839081 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861475 chr7:100861476 . . 0 22 hm5C_associated_SNPs_7473 0 0 1 4 1 ZNHIT1 chr7:100861498 5'GT 100861498 Upstream 23bp
chr7 100867227 100867227 1 + G A rs142188467 100867232 + 100867212 100867252 41 CTGCAGGTGTCTGAAGTGGACTGTGTGAGCCTGGGCATTCC CTGCAGGTGTCTGAAATGGACTGTGTGAGCCTGGGCATTCC < 41bp 1 0.666574194341048 1 0.101806789636612 experiment 0.666851611317903 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100867232 chr7:100867227 synonymous SNV . 0 16 hm5C_associated_SNPs_7474 0 0 1 0 1 ZNHIT1 chr7:100867218 3'AG 100867218 Downstream 10bp
chr7 100867227 100867227 1 + G A rs142188467 100867242 + 100867222 100867262 41 CTGAAGTGGACTGTGTGAGCCTGGGCATTCCCAGAGAGGAA CTGAAATGGACTGTGTGAGCCTGGGCATTCCCAGAGAGGAA < 41bp 1 0.779735521175451 1 0.341002315282822 experiment 0.440528957649098 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100867242 chr7:100867227 synonymous SNV . 0 6 hm5C_associated_SNPs_7475 0 0 1 0 1 ZNHIT1 chr7:100867218 3'AG 100867218 Downstream 10bp
chr7 100867240 100867240 1 + G A rs144254789 100867232 + 100867212 100867252 41 CTGCAGGTGTCTGAAGTGGACTGTGTGAGCCTGGGCATTCC CTGCAGGTGTCTGAAGTGGACTGTGTGAACCTGGGCATTCC < 41bp 1 0.671890950387505 1 0.113946288824081 experiment 0.65621809922499 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNHIT1 ENSG00000106400 UTR3 Human protein_coding chr7:100867232 chr7:100867240 . . 0 29 hm5C_associated_SNPs_7476 0 0 1 2 1 ZNHIT1 chr7:100867218 3'AG 100867218 Downstream 23bp
chr7 101813775 101813775 1 + C T rs189334175 101813790 + 101813770 101813810 41 GCTCTCATCGGCCAATCACTCCCTCCAGCTGGCCTCACAGA GCTCTTATCGGCCAATCACTCCCTCCAGCTGGCCTCACAGA < 41bp 1 0.0560719841144257 1 0.74062180519104 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101813790 chr7:101813775 nonsynonymous SNV 0.992 1 6 hm5C_associated_SNPs_7477 0 0 1 0 2 CUX1 chr7:101813726 3'AG 101813726 Downstream 50bp
chr7 101813775 101813775 1 + C T rs189334175 101813790 + 101813770 101813810 41 GCTCTCATCGGCCAATCACTCCCTCCAGCTGGCCTCACAGA GCTCTTATCGGCCAATCACTCCCTCCAGCTGGCCTCACAGA < 41bp 1 0.0560719841144257 1 0.74062180519104 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101813790 chr7:101813775 nonsynonymous SNV 0.992 1 6 hm5C_associated_SNPs_7477 0 0 1 0 2 CUX1 chr7:101813830 5'GT 101813830 Upstream 56bp
chr7 101813779 101813779 1 + G A rs180828525 101813790 + 101813770 101813810 41 GCTCTCATCGGCCAATCACTCCCTCCAGCTGGCCTCACAGA GCTCTCATCAGCCAATCACTCCCTCCAGCTGGCCTCACAGA < 41bp 1 0.043123755460874 1 0.524882555007935 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101813790 chr7:101813779 synonymous SNV . 0 10 hm5C_associated_SNPs_7478 0 0 1 0 2 CUX1 chr7:101813726 3'AG 101813726 Downstream 54bp
chr7 101813779 101813779 1 + G A rs180828525 101813790 + 101813770 101813810 41 GCTCTCATCGGCCAATCACTCCCTCCAGCTGGCCTCACAGA GCTCTCATCAGCCAATCACTCCCTCCAGCTGGCCTCACAGA < 41bp 1 0.043123755460874 1 0.524882555007935 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101813790 chr7:101813779 synonymous SNV . 0 10 hm5C_associated_SNPs_7478 0 0 1 0 2 CUX1 chr7:101813830 5'GT 101813830 Upstream 52bp
chr7 101837149 101837149 1 + G A rs2230104 101837147 + 101837127 101837167 41 TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA TGAAGTCCATGGAGTTTGCACCATCCGAGGGCGCTGGGACA < 41bp 1 0.0114249808120915 1 0.213053971529007 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837147 chr7:101837149 synonymous SNV . 0 23 hm5C_associated_SNPs_7479 0 0 1 0 2 CUX1 chr7:101837122 3'AG 101837122 Downstream 28bp
chr7 101837149 101837149 1 + G A rs2230104 101837147 + 101837127 101837167 41 TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA TGAAGTCCATGGAGTTTGCACCATCCGAGGGCGCTGGGACA < 41bp 1 0.0114249808120915 1 0.213053971529007 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837147 chr7:101837149 synonymous SNV . 0 23 hm5C_associated_SNPs_7479 0 0 1 0 2 CUX1 chr7:101837170 5'GT 101837170 Upstream 22bp
chr7 101837149 101837149 1 + G A rs2230104 101837148 + 101837128 101837168 41 GAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC GAAGTCCATGGAGTTTGCACCATCCGAGGGCGCTGGGACAC < 41bp 1 0.0678461133369814 1 0.359058737754822 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837148 chr7:101837149 synonymous SNV . 0 22 hm5C_associated_SNPs_7480 0 0 1 0 2 CUX1 chr7:101837122 3'AG 101837122 Downstream 28bp
chr7 101837149 101837149 1 + G A rs2230104 101837148 + 101837128 101837168 41 GAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC GAAGTCCATGGAGTTTGCACCATCCGAGGGCGCTGGGACAC < 41bp 1 0.0678461133369814 1 0.359058737754822 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837148 chr7:101837149 synonymous SNV . 0 22 hm5C_associated_SNPs_7480 0 0 1 0 2 CUX1 chr7:101837170 5'GT 101837170 Upstream 22bp
chr7 101916647 101916647 1 + A G rs813000 101916646 + 101916626 101916666 41 TTTGGCCACAGGACGCTGTGCAGAGCTGCAAGTCCGTATCA TTTGGCCACAGGACGCTGTGCGGAGCTGCAAGTCCGTATCA < 41bp 1 0.401715294445337 1 0.657349109649658 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101916646 chr7:101916647 synonymous SNV . 0 22 hm5C_associated_SNPs_7484 0 0 0 0 1 CUX1 chr7:101916637 3'AG 101916637 Downstream 11bp
chr7 101961830 101961830 1 + G A rs551876946 101961815 + 101961795 101961835 41 GCGTCCCCGGCCTGCTGGAGCGACTCGCCCGGCCAGCACTA GCGTCCCCGGCCTGCTGGAGCGACTCGCCCGGCCAACACTA < 41bp 1 0.492036216855681 1 0.136294335126877 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SH2B2 ENSG00000160999 CDS Human protein_coding chr7:101961815 chr7:101961830 synonymous SNV . 0 36 hm5C_associated_SNPs_7485 0 0 0 0 1 SH2B2 chr7:101961766 3'AG 101961766 Downstream 65bp
chr7 102944359 102944359 1 + A T rs149065163 102944354 + 102944334 102944374 41 AAGCAGAGATTGAACGTGAGCGTGGAGTAATCCTTAGAGAG AAGCAGAGATTGAACGTGAGCGTGGTGTAATCCTTAGAGAG < 41bp 1 0.627831870603633 1 0.545337080955505 experiment 0.744336258792734 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PMPCB ENSG00000105819 CDS Human protein_coding chr7:102944354 chr7:102944359 synonymous SNV . 0 26 hm5C_associated_SNPs_7488 0 0 1 0 1 PMPCB chr7:102944289 3'AG 102944289 Downstream 71bp
chr7 106791447 106791447 1 + G A rs3729878 106791445 + 106791425 106791465 41 ATGAAAGCTTTATTGAGTCACTGCCATTCCTTAAATCTTTG ATGAAAGCTTTATTGAGTCACTACCATTCCTTAAATCTTTG < 41bp 1 0.113062112486746 1 0.0503162741661072 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106791445 chr7:106791447 synonymous SNV . 0 23 hm5C_associated_SNPs_7490 0 0 1 0 2 PRKAR2B chr7:106791367 3'AG 106791367 Downstream 81bp
chr7 106791447 106791447 1 + G A rs3729878 106791445 + 106791425 106791465 41 ATGAAAGCTTTATTGAGTCACTGCCATTCCTTAAATCTTTG ATGAAAGCTTTATTGAGTCACTACCATTCCTTAAATCTTTG < 41bp 1 0.113062112486746 1 0.0503162741661072 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106791445 chr7:106791447 synonymous SNV . 0 23 hm5C_associated_SNPs_7490 0 0 1 0 2 PRKAR2B chr7:106791468 5'GT 106791468 Upstream 22bp
chr7 107559722 107559722 1 + A G rs8721 107559739 + 107559719 107559759 41 TATATTTTTTTCTGAAATTTCCTGGGAGCTTTTGTAGAAGT TATGTTTTTTTCTGAAATTTCCTGGGAGCTTTTGTAGAAGT < 41bp 1 0.297516871203824 1 0.424031108617783 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DLD ENSG00000091140 UTR3 Human protein_coding chr7:107559739 chr7:107559722 . . 0 4 hm5C_associated_SNPs_7495 0 0 1 0 1 DLD chr7:107559639 3'AG 107559639 Downstream 84bp
chr7 107559732 107559732 1 + G T rs17154615 107559739 + 107559719 107559759 41 TATATTTTTTTCTGAAATTTCCTGGGAGCTTTTGTAGAAGT TATATTTTTTTCTTAAATTTCCTGGGAGCTTTTGTAGAAGT < 41bp 1 0.257030507628281 1 0.349120646715164 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DLD ENSG00000091140 UTR3 Human protein_coding chr7:107559739 chr7:107559732 . . 0 14 hm5C_associated_SNPs_7496 3 0 1 0 1 DLD chr7:107559639 3'AG 107559639 Downstream 94bp
chr7 114655779 114655779 1 + C T rs145324284 114655776 + 114655756 114655796 41 TGTATCCTGGCTTGCTTGTTCTGCGAATTCCTGACCCTTTG TGTATCCTGGCTTGCTTGTTCTGTGAATTCCTGACCCTTTG < 41bp 1 0.586660478475986 1 0.275131940841675 experiment 0.826679043048028 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MDFIC ENSG00000135272 CDS Human protein_coding chr7:114655776 chr7:114655779 synonymous SNV . 0 24 hm5C_associated_SNPs_7497 0 0 1 0 1 MDFIC chr7:114655742 3'AG 114655742 Downstream 38bp
chr7 116199050 116199050 1 + C T rs35242077 116199065 + 116199045 116199085 41 TTTGACGGCATTTGGAAGGCCAGCTTCACCACCTTCACTGT TTTGATGGCATTTGGAAGGCCAGCTTCACCACCTTCACTGT < 41bp 1 0.390488896713939 1 0.240221321582794 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAV1 ENSG00000105974 CDS Human protein_coding chr7:116199065 chr7:116199050 synonymous SNV . 0 6 hm5C_associated_SNPs_7500 0 0 0 0 1 CAV1 chr7:116199000 3'AG 116199000 Downstream 51bp
chr7 127569261 127569261 1 + G A rs60805384 127569246 + 127569226 127569266 41 TCTTTTCTCCATCAGGATACCCAAAAAGCAAAGCAGTTCCT TCTTTTCTCCATCAGGATACCCAAAAAGCAAAGCAATTCCT < 41bp 1 0.087320875845679 1 0.300810515880585 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SND1 ENSG00000197157 CDS Human protein_coding chr7:127569246 chr7:127569261 synonymous SNV . 0 36 hm5C_associated_SNPs_7502 0 0 1 0 1 SND1 chr7:127569241 3'AG 127569241 Downstream 21bp
chr7 128478820 128478820 1 + C T rs115140972 128478838 + 128478818 128478858 41 CCCATCACCCGCAGTCCCTTCCCTGTCCATGTGTCGGAAGG CCTATCACCCGCAGTCCCTTCCCTGTCCATGTGTCGGAAGG < 41bp 1 0.0727797239685108 1 0.0361427962779999 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128478838 chr7:128478820 synonymous SNV . 0 3 hm5C_associated_SNPs_7518 1 0 1 0 1 FLNC chr7:128478857 5'GT 128478857 Upstream 38bp
chr7 128491324 128491324 1 + C T rs181067717 128491320 + 128491300 128491340 41 TTCTATGTGGATGCCATCAACAGCCGCCATGTCAGTGCCTA TTCTATGTGGATGCCATCAACAGCTGCCATGTCAGTGCCTA < 41bp 1 0.442936941614029 1 0.802037477493286 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128491320 chr7:128491324 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_7519 1 0 1 0 2 FLNC chr7:128491286 3'AG 128491286 Downstream 39bp
chr7 128491324 128491324 1 + C T rs181067717 128491320 + 128491300 128491340 41 TTCTATGTGGATGCCATCAACAGCCGCCATGTCAGTGCCTA TTCTATGTGGATGCCATCAACAGCTGCCATGTCAGTGCCTA < 41bp 1 0.442936941614029 1 0.802037477493286 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128491320 chr7:128491324 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_7519 1 0 1 0 2 FLNC chr7:128491414 5'GT 128491414 Upstream 91bp
chr7 128491338 128491338 1 + C T rs117517372 128491320 + 128491300 128491340 41 TTCTATGTGGATGCCATCAACAGCCGCCATGTCAGTGCCTA TTCTATGTGGATGCCATCAACAGCCGCCATGTCAGTGCTTA < 41bp 1 0.322531969971233 1 0.755885899066925 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128491320 chr7:128491338 synonymous SNV . 0 39 hm5C_associated_SNPs_7520 1 0 1 0 2 FLNC chr7:128491286 3'AG 128491286 Downstream 53bp
chr7 128491338 128491338 1 + C T rs117517372 128491320 + 128491300 128491340 41 TTCTATGTGGATGCCATCAACAGCCGCCATGTCAGTGCCTA TTCTATGTGGATGCCATCAACAGCCGCCATGTCAGTGCTTA < 41bp 1 0.322531969971233 1 0.755885899066925 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128491320 chr7:128491338 synonymous SNV . 0 39 hm5C_associated_SNPs_7520 1 0 1 0 2 FLNC chr7:128491414 5'GT 128491414 Upstream 77bp
chr7 129939221 129939221 1 + G A rs61731647 129939222 + 129939202 129939242 41 ATCCCAGGGCTTAGAGTACGCAGTGACAATTGAGGACCTGC ATCCCAGGGCTTAGAGTACACAGTGACAATTGAGGACCTGC < 41bp 1 0.575359256836709 1 0.0949289798736572 experiment 0.849281486326582 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129939222 chr7:129939221 nonsynonymous SNV 0.402 1 20 hm5C_associated_SNPs_7524 0 0 0 0 1 CPA4 chr7:129939244 5'GT 129939244 Upstream 24bp
chr7 129946635 129946635 1 + T A rs34549855 129946651 + 129946631 129946671 41 TATCTGATTACCAGAGGGATCCAGCTATCACCTCCATCTTG TATCAGATTACCAGAGGGATCCAGCTATCACCTCCATCTTG < 41bp 1 0.2322240620058 1 0.284936845302582 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129946651 chr7:129946635 synonymous SNV . 0 5 hm5C_associated_SNPs_7525 0 0 1 0 1 CPA4 chr7:129946627 3'AG 129946627 Downstream 9bp
chr7 129950667 129950667 1 + T C rs73721864 129950671 + 129950651 129950691 41 GCTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTG GCTCCGAAGTGTACCACGGACCCCACGCCAATTCGGAAGTG < 41bp 1 0.521927318408136 1 0.0723860263824463 experiment 0.956145363183728 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950671 chr7:129950667 synonymous SNV . 0 17 hm5C_associated_SNPs_7526 0 0 0 0 1 CPA4 chr7:129950627 3'AG 129950627 Downstream 41bp
chr7 129950667 129950667 1 + T C rs73721864 129950672 + 129950652 129950692 41 CTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTGG CTCCGAAGTGTACCACGGACCCCACGCCAATTCGGAAGTGG < 41bp 1 0.0879808035500798 1 0.0837815403938293 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950672 chr7:129950667 synonymous SNV . 0 16 hm5C_associated_SNPs_7527 0 0 0 0 1 CPA4 chr7:129950627 3'AG 129950627 Downstream 41bp
chr7 130021488 130021488 1 + G A rs1126899 130021476 + 130021456 130021496 41 TCTTGTCCTCCCCAGCTGGACTTCTGGCGGGGGCCTGCCCA TCTTGTCCTCCCCAGCTGGACTTCTGGCGGGGACCTGCCCA < 41bp 1 0.418299964921304 1 0.0401821434497833 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021476 chr7:130021488 synonymous SNV . 0 33 hm5C_associated_SNPs_7528 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 18bp
chr7 130021488 130021488 1 + G A rs1126899 130021476 + 130021456 130021496 41 TCTTGTCCTCCCCAGCTGGACTTCTGGCGGGGGCCTGCCCA TCTTGTCCTCCCCAGCTGGACTTCTGGCGGGGACCTGCCCA < 41bp 1 0.418299964921304 1 0.0401821434497833 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021476 chr7:130021488 synonymous SNV . 0 33 hm5C_associated_SNPs_7528 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 34bp
chr7 130021488 130021488 1 + G A rs1126899 130021489 + 130021469 130021509 41 AGCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCC AGCTGGACTTCTGGCGGGGACCTGCCCACCCTGGCTCCCCC < 41bp 1 0.144905827212845 1 0.389458626508713 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021489 chr7:130021488 synonymous SNV . 0 20 hm5C_associated_SNPs_7529 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 18bp
chr7 130021488 130021488 1 + G A rs1126899 130021489 + 130021469 130021509 41 AGCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCC AGCTGGACTTCTGGCGGGGACCTGCCCACCCTGGCTCCCCC < 41bp 1 0.144905827212845 1 0.389458626508713 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021489 chr7:130021488 synonymous SNV . 0 20 hm5C_associated_SNPs_7529 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 34bp
chr7 130021488 130021488 1 + G A rs1126899 130021490 + 130021470 130021510 41 GCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCA GCTGGACTTCTGGCGGGGACCTGCCCACCCTGGCTCCCCCA < 41bp 1 0.6159913829901 1 0.569707155227661 experiment 0.7680172340198 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021490 chr7:130021488 synonymous SNV . 0 19 hm5C_associated_SNPs_7530 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 18bp
chr7 130021488 130021488 1 + G A rs1126899 130021490 + 130021470 130021510 41 GCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCA GCTGGACTTCTGGCGGGGACCTGCCCACCCTGGCTCCCCCA < 41bp 1 0.6159913829901 1 0.569707155227661 experiment 0.7680172340198 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021490 chr7:130021488 synonymous SNV . 0 19 hm5C_associated_SNPs_7530 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 34bp
chr7 130021488 130021488 1 + G A rs1126899 130021493 + 130021473 130021513 41 GGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCG GGACTTCTGGCGGGGACCTGCCCACCCTGGCTCCCCCATCG < 41bp 1 0.298862480506348 1 0.312385141849518 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021493 chr7:130021488 synonymous SNV . 0 16 hm5C_associated_SNPs_7531 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 18bp
chr7 130021488 130021488 1 + G A rs1126899 130021493 + 130021473 130021513 41 GGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCG GGACTTCTGGCGGGGACCTGCCCACCCTGGCTCCCCCATCG < 41bp 1 0.298862480506348 1 0.312385141849518 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021493 chr7:130021488 synonymous SNV . 0 16 hm5C_associated_SNPs_7531 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 34bp
chr7 130021488 130021488 1 + G A rs1126899 130021494 + 130021474 130021514 41 GACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGA GACTTCTGGCGGGGACCTGCCCACCCTGGCTCCCCCATCGA < 41bp 1 0.323948244809516 1 0.123228490352631 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021494 chr7:130021488 synonymous SNV . 0 15 hm5C_associated_SNPs_7532 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 18bp
chr7 130021488 130021488 1 + G A rs1126899 130021494 + 130021474 130021514 41 GACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGA GACTTCTGGCGGGGACCTGCCCACCCTGGCTCCCCCATCGA < 41bp 1 0.323948244809516 1 0.123228490352631 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021494 chr7:130021488 synonymous SNV . 0 15 hm5C_associated_SNPs_7532 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 34bp
chr7 130021488 130021488 1 + G A rs1126899 130021495 + 130021475 130021515 41 ACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGAC ACTTCTGGCGGGGACCTGCCCACCCTGGCTCCCCCATCGAC < 41bp 1 0.710590792683127 1 0.174260407686234 experiment 0.578818414633745 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021495 chr7:130021488 synonymous SNV . 0 14 hm5C_associated_SNPs_7533 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 18bp
chr7 130021488 130021488 1 + G A rs1126899 130021495 + 130021475 130021515 41 ACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGAC ACTTCTGGCGGGGACCTGCCCACCCTGGCTCCCCCATCGAC < 41bp 1 0.710590792683127 1 0.174260407686234 experiment 0.578818414633745 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021495 chr7:130021488 synonymous SNV . 0 14 hm5C_associated_SNPs_7533 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 34bp
chr7 130021488 130021488 1 + G A rs1126899 130021497 + 130021477 130021517 41 TTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGT TTCTGGCGGGGACCTGCCCACCCTGGCTCCCCCATCGACGT < 41bp 1 0.459919539927957 1 0.0448881387710571 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021497 chr7:130021488 synonymous SNV . 0 12 hm5C_associated_SNPs_7534 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 18bp
chr7 130021488 130021488 1 + G A rs1126899 130021497 + 130021477 130021517 41 TTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGT TTCTGGCGGGGACCTGCCCACCCTGGCTCCCCCATCGACGT < 41bp 1 0.459919539927957 1 0.0448881387710571 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021497 chr7:130021488 synonymous SNV . 0 12 hm5C_associated_SNPs_7534 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 34bp
chr7 130021488 130021488 1 + G A rs1126899 130021498 + 130021478 130021518 41 TCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC TCTGGCGGGGACCTGCCCACCCTGGCTCCCCCATCGACGTC < 41bp 1 0.622825435058059 1 0.136277943849564 experiment 0.754349129883883 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021498 chr7:130021488 synonymous SNV . 0 11 hm5C_associated_SNPs_7535 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 18bp
chr7 130021488 130021488 1 + G A rs1126899 130021498 + 130021478 130021518 41 TCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC TCTGGCGGGGACCTGCCCACCCTGGCTCCCCCATCGACGTC < 41bp 1 0.622825435058059 1 0.136277943849564 experiment 0.754349129883883 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021498 chr7:130021488 synonymous SNV . 0 11 hm5C_associated_SNPs_7535 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 34bp
chr7 130021488 130021488 1 + G A rs1126899 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT CGGGGACCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT < 41bp 1 0.206719454415651 1 0.121041119098663 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021488 synonymous SNV . 0 6 hm5C_associated_SNPs_7536 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 18bp
chr7 130021488 130021488 1 + G A rs1126899 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT CGGGGACCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT < 41bp 1 0.206719454415651 1 0.121041119098663 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021488 synonymous SNV . 0 6 hm5C_associated_SNPs_7536 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 34bp
chr7 130021488 130021488 1 + G A rs1126899 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC GGGACCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC < 41bp 1 0.204495816385477 1 0.0332126319408417 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021488 synonymous SNV . 0 4 hm5C_associated_SNPs_7537 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 18bp
chr7 130021488 130021488 1 + G A rs1126899 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC GGGACCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC < 41bp 1 0.204495816385477 1 0.0332126319408417 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021488 synonymous SNV . 0 4 hm5C_associated_SNPs_7537 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 34bp
chr7 130021488 130021488 1 + G A rs1126899 130021506 + 130021486 130021526 41 GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC GGACCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC < 41bp 1 0.437906148583406 1 0.271169662475586 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021506 chr7:130021488 synonymous SNV . 0 3 hm5C_associated_SNPs_7538 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 18bp
chr7 130021488 130021488 1 + G A rs1126899 130021506 + 130021486 130021526 41 GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC GGACCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC < 41bp 1 0.437906148583406 1 0.271169662475586 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021506 chr7:130021488 synonymous SNV . 0 3 hm5C_associated_SNPs_7538 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 34bp
chr7 130021488 130021488 1 + G A rs1126899 130021507 + 130021487 130021527 41 GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC GACCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC < 41bp 1 0.0891313962113538 1 0.0561184287071228 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021507 chr7:130021488 synonymous SNV . 0 2 hm5C_associated_SNPs_7539 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 18bp
chr7 130021488 130021488 1 + G A rs1126899 130021507 + 130021487 130021527 41 GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC GACCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC < 41bp 1 0.0891313962113538 1 0.0561184287071228 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021507 chr7:130021488 synonymous SNV . 0 2 hm5C_associated_SNPs_7539 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 34bp
chr7 130021488 130021488 1 + G A rs1126899 130021508 + 130021488 130021528 41 GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT ACCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT < 41bp 1 0.0494596176211269 1 0.378213495016098 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021508 chr7:130021488 synonymous SNV . 0 1 hm5C_associated_SNPs_7540 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 18bp
chr7 130021488 130021488 1 + G A rs1126899 130021508 + 130021488 130021528 41 GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT ACCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT < 41bp 1 0.0494596176211269 1 0.378213495016098 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021508 chr7:130021488 synonymous SNV . 0 1 hm5C_associated_SNPs_7540 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 34bp
chr7 130021524 130021524 1 + G T rs559471767 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTTC < 41bp 1 0.214879096536959 1 0.0378236770629883 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021524 synonymous SNV . 0 40 hm5C_associated_SNPs_7541 0 0 0 0 1 CPA1 chr7:130021471 3'AG 130021471 Downstream 54bp
chr7 130021524 130021524 1 + G T rs559471767 130021506 + 130021486 130021526 41 GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTTCC < 41bp 1 0.463965629116156 1 0.324196636676788 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021506 chr7:130021524 synonymous SNV . 0 39 hm5C_associated_SNPs_7542 0 0 0 0 1 CPA1 chr7:130021471 3'AG 130021471 Downstream 54bp
chr7 130021524 130021524 1 + G T rs559471767 130021507 + 130021487 130021527 41 GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTTCCC < 41bp 1 0.0901503781706638 1 0.111787378787994 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021507 chr7:130021524 synonymous SNV . 0 38 hm5C_associated_SNPs_7543 0 0 0 0 1 CPA1 chr7:130021471 3'AG 130021471 Downstream 54bp
chr7 130021524 130021524 1 + G T rs559471767 130021508 + 130021488 130021528 41 GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTTCCCT < 41bp 1 0.044767285898555 1 0.202814400196075 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021508 chr7:130021524 synonymous SNV . 0 37 hm5C_associated_SNPs_7544 0 0 0 0 1 CPA1 chr7:130021471 3'AG 130021471 Downstream 54bp
chr7 130021524 130021524 1 + G T rs559471767 130021509 + 130021489 130021529 41 CCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT CCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTTCCCTT < 41bp 1 0.373163975398991 1 0.233069330453873 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021509 chr7:130021524 synonymous SNV . 0 36 hm5C_associated_SNPs_7545 0 0 0 0 1 CPA1 chr7:130021471 3'AG 130021471 Downstream 54bp
chr7 130021524 130021524 1 + G T rs559471767 130021515 + 130021495 130021535 41 CACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAG CACCCTGGCTCCCCCATCGACGTCCGAGTTCCCTTCCCCAG < 41bp 1 0.384173739539782 1 0.317593365907669 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021515 chr7:130021524 synonymous SNV . 0 30 hm5C_associated_SNPs_7546 0 0 0 0 1 CPA1 chr7:130021471 3'AG 130021471 Downstream 54bp
chr7 130021524 130021524 1 + G T rs559471767 130021518 + 130021498 130021538 41 CCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCAT CCTGGCTCCCCCATCGACGTCCGAGTTCCCTTCCCCAGCAT < 41bp 1 0.510525413360127 1 0.425122141838074 experiment 0.978949173279745 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021518 chr7:130021524 synonymous SNV . 0 27 hm5C_associated_SNPs_7547 0 0 0 0 1 CPA1 chr7:130021471 3'AG 130021471 Downstream 54bp
chr7 130021524 130021524 1 + G T rs559471767 130021519 + 130021499 130021539 41 CTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATC CTGGCTCCCCCATCGACGTCCGAGTTCCCTTCCCCAGCATC < 41bp 1 0.371980437767301 1 0.22535565495491 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021519 chr7:130021524 synonymous SNV . 0 26 hm5C_associated_SNPs_7548 0 0 0 0 1 CPA1 chr7:130021471 3'AG 130021471 Downstream 54bp
chr7 130021524 130021524 1 + G T rs559471767 130021525 + 130021505 130021545 41 CCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCG CCCCCATCGACGTCCGAGTTCCCTTCCCCAGCATCCAGGCG < 41bp 1 0.0997361470860829 1 0.0225912928581238 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021525 chr7:130021524 synonymous SNV . 0 20 hm5C_associated_SNPs_7549 0 0 0 0 1 CPA1 chr7:130021471 3'AG 130021471 Downstream 54bp
chr7 130021524 130021524 1 + G T rs559471767 130021526 + 130021506 130021546 41 CCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGG CCCCATCGACGTCCGAGTTCCCTTCCCCAGCATCCAGGCGG < 41bp 1 0.0309653925335836 1 0.0447860360145569 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021526 chr7:130021524 synonymous SNV . 0 19 hm5C_associated_SNPs_7550 0 0 0 0 1 CPA1 chr7:130021471 3'AG 130021471 Downstream 54bp
chr7 130021524 130021524 1 + G T rs559471767 130021527 + 130021507 130021547 41 CCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGT CCCATCGACGTCCGAGTTCCCTTCCCCAGCATCCAGGCGGT < 41bp 1 0.230320046843094 1 0.0905312299728394 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021527 chr7:130021524 synonymous SNV . 0 18 hm5C_associated_SNPs_7551 0 0 0 0 1 CPA1 chr7:130021471 3'AG 130021471 Downstream 54bp
chr7 130021524 130021524 1 + G T rs559471767 130021530 + 130021510 130021550 41 ATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAA ATCGACGTCCGAGTTCCCTTCCCCAGCATCCAGGCGGTCAA < 41bp 1 0.680041628470851 1 0.718171834945679 experiment 0.639916743058299 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021530 chr7:130021524 synonymous SNV . 0 15 hm5C_associated_SNPs_7552 0 0 0 0 1 CPA1 chr7:130021471 3'AG 130021471 Downstream 54bp
chr7 130021524 130021524 1 + G T rs559471767 130021531 + 130021511 130021551 41 TCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAG TCGACGTCCGAGTTCCCTTCCCCAGCATCCAGGCGGTCAAG < 41bp 1 0.28888365374706 1 0.289722114801407 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021531 chr7:130021524 synonymous SNV . 0 14 hm5C_associated_SNPs_7553 0 0 0 0 1 CPA1 chr7:130021471 3'AG 130021471 Downstream 54bp
chr7 130021524 130021524 1 + G T rs559471767 130021532 + 130021512 130021552 41 CGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGA CGACGTCCGAGTTCCCTTCCCCAGCATCCAGGCGGTCAAGA < 41bp 1 0.277375600587527 1 0.162574887275696 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021532 chr7:130021524 synonymous SNV . 0 13 hm5C_associated_SNPs_7554 0 0 0 0 1 CPA1 chr7:130021471 3'AG 130021471 Downstream 54bp
chr7 130021524 130021524 1 + G T rs559471767 130021533 + 130021513 130021553 41 GACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGAT GACGTCCGAGTTCCCTTCCCCAGCATCCAGGCGGTCAAGAT < 41bp 1 0.773707822965684 1 0.31876540184021 experiment 0.452584354068632 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021533 chr7:130021524 synonymous SNV . 0 12 hm5C_associated_SNPs_7555 0 0 0 0 1 CPA1 chr7:130021471 3'AG 130021471 Downstream 54bp
chr7 130021524 130021524 1 + G T rs559471767 130021536 + 130021516 130021556 41 GTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT GTCCGAGTTCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT < 41bp 1 0.13020961236861 1 0.114749372005463 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021536 chr7:130021524 synonymous SNV . 0 9 hm5C_associated_SNPs_7556 0 0 0 0 1 CPA1 chr7:130021471 3'AG 130021471 Downstream 54bp
chr7 130021524 130021524 1 + G T rs559471767 130021539 + 130021519 130021559 41 CGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCT CGAGTTCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCT < 41bp 1 0.36974298627182 1 0.359341740608215 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021539 chr7:130021524 synonymous SNV . 0 6 hm5C_associated_SNPs_7557 0 0 0 0 1 CPA1 chr7:130021471 3'AG 130021471 Downstream 54bp
chr7 130021524 130021524 1 + G T rs559471767 130021540 + 130021520 130021560 41 GAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCTG GAGTTCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCTG < 41bp 1 0.66847223659255 1 0.835278272628784 experiment 0.663055526814901 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021540 chr7:130021524 synonymous SNV . 0 5 hm5C_associated_SNPs_7558 0 0 0 0 1 CPA1 chr7:130021471 3'AG 130021471 Downstream 54bp
chr7 130021524 130021524 1 + G T rs559471767 130021544 + 130021524 130021564 41 GCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCTGGAGT TCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCTGGAGT < 41bp 1 0.179270067894377 1 0.416392147541046 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021544 chr7:130021524 synonymous SNV . 0 1 hm5C_associated_SNPs_7559 0 0 0 0 1 CPA1 chr7:130021471 3'AG 130021471 Downstream 54bp
chr7 133682273 133682273 1 + G A rs137961262 133682272 + 133682252 133682292 41 TCCTGCTCAAGACAGCCACACGAACACGGATCTCCCCCCAG TCCTGCTCAAGACAGCCACACAAACACGGATCTCCCCCCAG < 41bp 1 0.18404573014046 1 0.138455659151077 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133682272 chr7:133682273 synonymous SNV . 0 22 hm5C_associated_SNPs_7563 0 0 1 0 1 EXOC4 chr7:133682245 3'AG 133682245 Downstream 29bp
chr7 133682273 133682273 1 + G A rs137961262 133682278 + 133682258 133682298 41 TCAAGACAGCCACACGAACACGGATCTCCCCCCAGTGTCAG TCAAGACAGCCACACAAACACGGATCTCCCCCCAGTGTCAG < 41bp 1 0.40406512244378 1 0.177852243185043 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133682278 chr7:133682273 synonymous SNV . 0 16 hm5C_associated_SNPs_7564 0 0 1 0 1 EXOC4 chr7:133682245 3'AG 133682245 Downstream 29bp
chr7 133682285 133682285 1 + C T rs34608222 133682272 + 133682252 133682292 41 TCCTGCTCAAGACAGCCACACGAACACGGATCTCCCCCCAG TCCTGCTCAAGACAGCCACACGAACACGGATCTTCCCCCAG < 41bp 1 0.215345598512379 1 0.0693449378013611 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133682272 chr7:133682285 synonymous SNV . 0 34 hm5C_associated_SNPs_7565 0 0 1 0 1 EXOC4 chr7:133682245 3'AG 133682245 Downstream 41bp
chr7 133682285 133682285 1 + C T rs34608222 133682276 + 133682256 133682296 41 GCTCAAGACAGCCACACGAACACGGATCTCCCCCCAGTGTC GCTCAAGACAGCCACACGAACACGGATCTTCCCCCAGTGTC < 41bp 1 0.732424590249185 1 0.541906833648682 experiment 0.535150819501629 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133682276 chr7:133682285 synonymous SNV . 0 30 hm5C_associated_SNPs_7566 0 0 1 0 1 EXOC4 chr7:133682245 3'AG 133682245 Downstream 41bp
chr7 133682285 133682285 1 + C T rs34608222 133682278 + 133682258 133682298 41 TCAAGACAGCCACACGAACACGGATCTCCCCCCAGTGTCAG TCAAGACAGCCACACGAACACGGATCTTCCCCCAGTGTCAG < 41bp 1 0.400239100077229 1 0.228960067033768 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133682278 chr7:133682285 synonymous SNV . 0 28 hm5C_associated_SNPs_7567 0 0 1 0 1 EXOC4 chr7:133682245 3'AG 133682245 Downstream 41bp
chr7 134215403 134215403 1 + T A rs1722883 134215396 + 134215376 134215416 41 CTTTTCTTTTGCCTTTCAGTCTCCTCTTGGCAAAGTGAAAG CTTTTCTTTTGCCTTTCAGTCTCCTCTAGGCAAAGTGAAAG < 41bp 1 0.272114864771606 1 0.425022095441818 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134215396 chr7:134215403 synonymous SNV . 0 28 hm5C_associated_SNPs_7568 0 1 1 0 1 AKR1B10 chr7:134215395 3'AG 134215395 Downstream 9bp
chr7 134552477 134552477 1 + A G rs78476965 134552471 + 134552451 134552491 41 CATCATCTGGTCTCCCTGAACCTGAAATCACACCATGGATG CATCATCTGGTCTCCCTGAACCTGAAGTCACACCATGGATG < 41bp 1 0.459156010538914 1 0.288136422634125 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CALD1 ENSG00000122786 UTR5 Human protein_coding chr7:134552471 chr7:134552477 . . 0 27 hm5C_associated_SNPs_7569 0 0 1 0 2 CALD1 chr7:134552444 3'AG 134552444 Downstream 34bp
chr7 134552477 134552477 1 + A G rs78476965 134552471 + 134552451 134552491 41 CATCATCTGGTCTCCCTGAACCTGAAATCACACCATGGATG CATCATCTGGTCTCCCTGAACCTGAAGTCACACCATGGATG < 41bp 1 0.459156010538914 1 0.288136422634125 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CALD1 ENSG00000122786 UTR5 Human protein_coding chr7:134552471 chr7:134552477 . . 0 27 hm5C_associated_SNPs_7569 0 0 1 0 2 CALD1 chr7:134552555 5'GT 134552555 Upstream 79bp
chr7 140379042 140379042 1 + C T rs150090657 140379056 + 140379036 140379076 41 CCTCTGCGCCCCTTTGTCACCAGAGAAGTCTTGGTGGAAAC CCTCTGTGCCCCTTTGTCACCAGAGAAGTCTTGGTGGAAAC < 41bp 1 0.582029984660381 1 0.749381303787231 experiment 0.835940030679238 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140379056 chr7:140379042 nonsynonymous SNV 0.922 1 7 hm5C_associated_SNPs_7575 0 0 1 0 2 ADCK2 chr7:140378955 3'AG 140378955 Downstream 88bp
chr7 140379042 140379042 1 + C T rs150090657 140379056 + 140379036 140379076 41 CCTCTGCGCCCCTTTGTCACCAGAGAAGTCTTGGTGGAAAC CCTCTGTGCCCCTTTGTCACCAGAGAAGTCTTGGTGGAAAC < 41bp 1 0.582029984660381 1 0.749381303787231 experiment 0.835940030679238 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140379056 chr7:140379042 nonsynonymous SNV 0.922 1 7 hm5C_associated_SNPs_7575 0 0 1 0 2 ADCK2 chr7:140379083 5'GT 140379083 Upstream 42bp
chr7 140397954 140397954 1 + G C rs112027407 140397974 + 140397954 140397994 41 GGGGTGGGCAGAAGGCAAAGCCCTGTGTGACTTGGGCAAAG CGGGTGGGCAGAAGGCAAAGCCCTGTGTGACTTGGGCAAAG < 41bp 1 0.262370002960325 1 0.200371265411377 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDUFB2 ENSG00000090266;ENSG00000090266 UTR5;UTR3 Human protein_coding chr7:140397974 chr7:140397954 . . 0 1 hm5C_associated_SNPs_7576 0 0 1 0 1 NDUFB2 chr7:140397875 3'AG 140397875 Downstream 80bp
chr7 140404746 140404746 1 + C T rs79658946 140404750 + 140404730 140404770 41 ACTGAAGGTGTAGACTCAGCCTCACTCTGTACAAGTGGGTG ACTGAAGGTGTAGACTTAGCCTCACTCTGTACAAGTGGGTG < 41bp 1 0.244801045967781 1 0.213245034217834 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFB2 ENSG00000090266 UTR3 Human protein_coding chr7:140404750 chr7:140404746 . . 0 17 hm5C_associated_SNPs_7577 0 0 1 3 1 NDUFB2 chr7:140404763 5'GT 140404763 Upstream 18bp
chr7 140404760 140404760 1 + A G rs201056308 140404750 + 140404730 140404770 41 ACTGAAGGTGTAGACTCAGCCTCACTCTGTACAAGTGGGTG ACTGAAGGTGTAGACTCAGCCTCACTCTGTGCAAGTGGGTG < 41bp 1 0.179370460949523 1 0.135564684867859 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFB2 ENSG00000090266 UTR3 Human protein_coding chr7:140404750 chr7:140404760 . . 0 31 hm5C_associated_SNPs_7578 0 0 1 1 1 NDUFB2 chr7:140404763 5'GT 140404763 Upstream 4bp
chr7 142458437 142458437 1 + C T rs372637371 142458431 + 142458411 142458451 41 GCCCCCTTTGATGATGATGACAAGATCGTTGGGGGCTACAA GCCCCCTTTGATGATGATGACAAGATTGTTGGGGGCTACAA < 41bp 1 0.761296411637433 1 0.42686453461647 experiment 0.477407176725133 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458431 chr7:142458437 synonymous SNV . 0 27 hm5C_associated_SNPs_7580 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 32bp
chr7 142458437 142458437 1 + C T rs372637371 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATTGTTGGGGGCTACAACTGTGAGGAGAATTC < 41bp 1 0.302399324151122 1 0.436391025781631 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458437 synonymous SNV . 0 12 hm5C_associated_SNPs_7581 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 32bp
chr7 142458437 142458437 1 + C T rs372637371 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATTGTTGGGGGCTACAACTGTGAGGAGAATTCTGT < 41bp 1 0.179701627078617 1 0.262964844703674 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458437 synonymous SNV . 0 9 hm5C_associated_SNPs_7582 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 32bp
chr7 142458437 142458437 1 + C T rs372637371 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATTGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC < 41bp 1 0.428847378889624 1 0.300113677978516 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458437 synonymous SNV . 0 6 hm5C_associated_SNPs_7583 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 32bp
chr7 142459659 142459659 1 + G A rs111033564 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTGAGACTGGGAGAGCACAACATCAAAGTCCTGGAGGGGAA < 41bp 1 0.78915931522016 1 0.16967311501503 experiment 0.421681369559679 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459659 nonsynonymous SNV 0.220 1 25 hm5C_associated_SNPs_7584 1 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 35bp
chr7 142459659 142459659 1 + G A rs111033564 142459658 + 142459638 142459678 41 AGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAATGA AGACTGGGAGAGCACAACATCAAAGTCCTGGAGGGGAATGA < 41bp 1 0.725831448369616 1 0.292337596416473 experiment 0.548337103260768 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459658 chr7:142459659 nonsynonymous SNV 0.220 1 22 hm5C_associated_SNPs_7585 1 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 35bp
chr7 142459659 142459659 1 + G A rs111033564 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCACAACATCAAAGTCCTGGAGGGGAATGAGCAGTT < 41bp 1 0.525690733274522 1 0.246982157230377 experiment 0.948618533450956 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459659 nonsynonymous SNV 0.220 1 16 hm5C_associated_SNPs_7586 1 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 35bp
chr7 142459679 142459679 1 + G A rs376671702 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAACAGTT < 41bp 1 0.515033389386791 1 0.409529328346252 experiment 0.969933221226417 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459679 synonymous SNV . 0 36 hm5C_associated_SNPs_7587 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 55bp
chr7 142459679 142459679 1 + G A rs376671702 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG AAGTCCTGGAGGGGAATGAACAGTTCATCAATGCAGCCAAG < 41bp 1 0.540190995060074 1 0.419238567352295 experiment 0.919618009879852 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459679 synonymous SNV . 0 20 hm5C_associated_SNPs_7588 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 55bp
chr7 142459679 142459679 1 + G A rs376671702 142459685 + 142459665 142459705 41 CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT CTGGAGGGGAATGAACAGTTCATCAATGCAGCCAAGATCAT < 41bp 1 0.645888905450716 1 0.048082172870636 experiment 0.708222189098568 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459685 chr7:142459679 synonymous SNV . 0 15 hm5C_associated_SNPs_7589 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 55bp
chr7 142459679 142459679 1 + G A rs376671702 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAGGGGAATGAACAGTTCATCAATGCAGCCAAGATCATCCG < 41bp 1 0.627534613079459 1 0.140880644321442 experiment 0.744930773841081 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459679 synonymous SNV . 0 12 hm5C_associated_SNPs_7590 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 55bp
chr7 142459679 142459679 1 + G A rs376671702 142459693 + 142459673 142459713 41 GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC GAATGAACAGTTCATCAATGCAGCCAAGATCATCCGCCACC < 41bp 1 0.577752301763566 1 0.0341362953186035 experiment 0.844495396472867 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459693 chr7:142459679 synonymous SNV . 0 7 hm5C_associated_SNPs_7591 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 55bp
chr7 142459679 142459679 1 + G A rs376671702 142459696 + 142459676 142459716 41 TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC TGAACAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC < 41bp 1 0.391069936297328 1 0.312047362327576 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459696 chr7:142459679 synonymous SNV . 0 4 hm5C_associated_SNPs_7592 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 55bp
chr7 142459703 142459703 1 + C T rs139664510 142459685 + 142459665 142459705 41 CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATTAT < 41bp 1 0.628341452876079 1 0.0469895303249359 experiment 0.743317094247842 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459685 chr7:142459703 synonymous SNV . 0 39 hm5C_associated_SNPs_7593 1 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 79bp
chr7 142459703 142459703 1 + C T rs139664510 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATTATCCG < 41bp 1 0.603991195093371 1 0.312358736991882 experiment 0.792017609813257 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459703 synonymous SNV . 0 36 hm5C_associated_SNPs_7594 1 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 79bp
chr7 142459703 142459703 1 + C T rs139664510 142459693 + 142459673 142459713 41 GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC GAATGAGCAGTTCATCAATGCAGCCAAGATTATCCGCCACC < 41bp 1 0.497535370238124 1 0.0478076636791229 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459693 chr7:142459703 synonymous SNV . 0 31 hm5C_associated_SNPs_7595 1 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 79bp
chr7 142459703 142459703 1 + C T rs139664510 142459696 + 142459676 142459716 41 TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC TGAGCAGTTCATCAATGCAGCCAAGATTATCCGCCACCCCC < 41bp 1 0.352568253166292 1 0.187770694494247 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459696 chr7:142459703 synonymous SNV . 0 28 hm5C_associated_SNPs_7596 1 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 79bp
chr7 142459703 142459703 1 + C T rs139664510 142459706 + 142459686 142459726 41 ATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAG ATCAATGCAGCCAAGATTATCCGCCACCCCCAATACGACAG < 41bp 1 0.371813462379527 1 0.440144091844559 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459706 chr7:142459703 synonymous SNV . 0 18 hm5C_associated_SNPs_7597 1 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 79bp
chr7 142459703 142459703 1 + C T rs139664510 142459709 + 142459689 142459729 41 AATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA AATGCAGCCAAGATTATCCGCCACCCCCAATACGACAGGAA < 41bp 1 0.108070780879589 1 0.0706679224967957 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459709 chr7:142459703 synonymous SNV . 0 15 hm5C_associated_SNPs_7598 1 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 79bp
chr7 142459703 142459703 1 + C T rs139664510 142459710 + 142459690 142459730 41 ATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG ATGCAGCCAAGATTATCCGCCACCCCCAATACGACAGGAAG < 41bp 1 0.179196631594745 1 0.0651943981647491 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459710 chr7:142459703 synonymous SNV . 0 14 hm5C_associated_SNPs_7599 1 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 79bp
chr7 142459703 142459703 1 + C T rs139664510 142459712 + 142459692 142459732 41 GCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC GCAGCCAAGATTATCCGCCACCCCCAATACGACAGGAAGAC < 41bp 1 0.133816938296787 1 0.0511132776737213 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459712 chr7:142459703 synonymous SNV . 0 12 hm5C_associated_SNPs_7600 1 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 79bp
chr7 142459703 142459703 1 + C T rs139664510 142459713 + 142459693 142459733 41 CAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT CAGCCAAGATTATCCGCCACCCCCAATACGACAGGAAGACT < 41bp 1 0.477210405292505 1 0.524470388889313 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459713 chr7:142459703 synonymous SNV . 0 11 hm5C_associated_SNPs_7601 1 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 79bp
chr7 142459703 142459703 1 + C T rs139664510 142459714 + 142459694 142459734 41 AGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC AGCCAAGATTATCCGCCACCCCCAATACGACAGGAAGACTC < 41bp 1 0.499078114196151 1 0.166388213634491 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459714 chr7:142459703 synonymous SNV . 0 10 hm5C_associated_SNPs_7602 1 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 79bp
chr7 142459703 142459703 1 + C T rs139664510 142459715 + 142459695 142459735 41 GCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCT GCCAAGATTATCCGCCACCCCCAATACGACAGGAAGACTCT < 41bp 1 0.24490248951228 1 0.235744386911392 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459715 chr7:142459703 synonymous SNV . 0 9 hm5C_associated_SNPs_7603 1 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 79bp
chr7 142459703 142459703 1 + C T rs139664510 142459716 + 142459696 142459736 41 CCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCTG CCAAGATTATCCGCCACCCCCAATACGACAGGAAGACTCTG < 41bp 1 0.486183210586067 1 0.127536237239838 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459716 chr7:142459703 synonymous SNV . 0 8 hm5C_associated_SNPs_7604 1 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 79bp
chr7 142459835 142459835 1 + G A rs369013081 142459816 + 142459796 142459836 41 CACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGA CACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACAA < 41bp 1 0.261375066800655 1 0.265331268310547 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459816 chr7:142459835 synonymous SNV . 0 40 hm5C_associated_SNPs_7605 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 44bp
chr7 142459835 142459835 1 + G A rs369013081 142459817 + 142459797 142459837 41 ACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAA ACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACAAA < 41bp 1 0.110684264409603 1 0.31091096997261 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459817 chr7:142459835 synonymous SNV . 0 39 hm5C_associated_SNPs_7606 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 44bp
chr7 142459835 142459835 1 + G A rs369013081 142459818 + 142459798 142459838 41 CCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAG CCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACAAAG < 41bp 1 0.118109709642448 1 0.263774633407593 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459818 chr7:142459835 synonymous SNV . 0 38 hm5C_associated_SNPs_7607 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 44bp
chr7 142459835 142459835 1 + G A rs369013081 142459819 + 142459799 142459839 41 CATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGT CATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACAAAGT < 41bp 1 0.668617671672073 1 0.939314424991608 experiment 0.662764656655854 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459819 chr7:142459835 synonymous SNV . 0 37 hm5C_associated_SNPs_7608 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 44bp
chr7 142459835 142459835 1 + G A rs369013081 142459821 + 142459801 142459841 41 TCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGC TCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACAAAGTGC < 41bp 1 0.284293617160662 1 0.731705367565155 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459821 chr7:142459835 synonymous SNV . 0 35 hm5C_associated_SNPs_7609 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 44bp
chr7 142459835 142459835 1 + G A rs369013081 142459822 + 142459802 142459842 41 CTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCC CTCTCTGCCCACCGCCCCTCCAGCCACTGGCACAAAGTGCC < 41bp 1 0.370955226927762 1 0.539935052394867 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459822 chr7:142459835 synonymous SNV . 0 34 hm5C_associated_SNPs_7610 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 44bp
chr7 142459835 142459835 1 + G A rs369013081 142459825 + 142459805 142459845 41 TCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCA TCTGCCCACCGCCCCTCCAGCCACTGGCACAAAGTGCCTCA < 41bp 1 0.446174643001567 1 0.152482509613037 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459825 chr7:142459835 synonymous SNV . 0 31 hm5C_associated_SNPs_7611 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 44bp
chr7 142459835 142459835 1 + G A rs369013081 142459826 + 142459806 142459846 41 CTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCAT CTGCCCACCGCCCCTCCAGCCACTGGCACAAAGTGCCTCAT < 41bp 1 0.651023570570543 1 0.309919834136963 experiment 0.697952858858915 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459826 chr7:142459835 synonymous SNV . 0 30 hm5C_associated_SNPs_7612 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 44bp
chr7 142459835 142459835 1 + G A rs369013081 142459828 + 142459808 142459848 41 GCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCT GCCCACCGCCCCTCCAGCCACTGGCACAAAGTGCCTCATCT < 41bp 1 0.673221580905883 1 0.402917146682739 experiment 0.653556838188235 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459828 chr7:142459835 synonymous SNV . 0 28 hm5C_associated_SNPs_7613 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 44bp
chr7 142459835 142459835 1 + G A rs369013081 142459832 + 142459812 142459852 41 ACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCTCTGG ACCGCCCCTCCAGCCACTGGCACAAAGTGCCTCATCTCTGG < 41bp 1 0.752432804133851 1 0.430320024490356 experiment 0.495134391732297 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459832 chr7:142459835 synonymous SNV . 0 24 hm5C_associated_SNPs_7614 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 44bp
chr7 142459835 142459835 1 + G A rs369013081 142459834 + 142459814 142459854 41 CGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCTCTGGCT CGCCCCTCCAGCCACTGGCACAAAGTGCCTCATCTCTGGCT < 41bp 1 0.620776536729535 1 0.162531793117523 experiment 0.758446926540931 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459834 chr7:142459835 synonymous SNV . 0 22 hm5C_associated_SNPs_7615 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 44bp
chr7 142459835 142459835 1 + G A rs369013081 142459841 + 142459821 142459861 41 CCAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAA CCAGCCACTGGCACAAAGTGCCTCATCTCTGGCTGGGGCAA < 41bp 1 0.387638066885317 1 0.0623470842838287 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459841 chr7:142459835 synonymous SNV . 0 15 hm5C_associated_SNPs_7616 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 44bp
chr7 142459835 142459835 1 + G A rs369013081 142459842 + 142459822 142459862 41 CAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAC CAGCCACTGGCACAAAGTGCCTCATCTCTGGCTGGGGCAAC < 41bp 1 0.438300786082781 1 0.040308952331543 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459842 chr7:142459835 synonymous SNV . 0 14 hm5C_associated_SNPs_7617 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 44bp
chr7 142459835 142459835 1 + G A rs369013081 142459844 + 142459824 142459864 41 GCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACAC GCCACTGGCACAAAGTGCCTCATCTCTGGCTGGGGCAACAC < 41bp 1 0.475334893905337 1 0.0273897647857666 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459844 chr7:142459835 synonymous SNV . 0 12 hm5C_associated_SNPs_7618 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 44bp
chr7 142459835 142459835 1 + G A rs369013081 142459847 + 142459827 142459867 41 ACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACACTGC ACTGGCACAAAGTGCCTCATCTCTGGCTGGGGCAACACTGC < 41bp 1 0.717975145396941 1 0.242513477802277 experiment 0.564049709206117 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459847 chr7:142459835 synonymous SNV . 0 9 hm5C_associated_SNPs_7619 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 44bp
chr7 142459841 142459841 1 + C A rs141847266 142459821 + 142459801 142459841 41 TCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGC TCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGA < 41bp 1 0.305000740628363 1 0.554862380027771 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459821 chr7:142459841 stopgain 0.095 1 41 hm5C_associated_SNPs_7620 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 38bp
chr7 142459841 142459841 1 + C A rs141847266 142459822 + 142459802 142459842 41 CTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCC CTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGAC < 41bp 1 0.408725911430277 1 0.507359266281128 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459822 chr7:142459841 stopgain 0.095 1 40 hm5C_associated_SNPs_7621 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 38bp
chr7 142459841 142459841 1 + C A rs141847266 142459825 + 142459805 142459845 41 TCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCA TCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGACTCA < 41bp 1 0.38166457533015 1 0.100578367710114 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459825 chr7:142459841 stopgain 0.095 1 37 hm5C_associated_SNPs_7622 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 38bp
chr7 142459841 142459841 1 + C A rs141847266 142459826 + 142459806 142459846 41 CTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCAT CTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGACTCAT < 41bp 1 0.621149655989002 1 0.27783340215683 experiment 0.757700688021996 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459826 chr7:142459841 stopgain 0.095 1 36 hm5C_associated_SNPs_7623 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 38bp
chr7 142459841 142459841 1 + C A rs141847266 142459828 + 142459808 142459848 41 GCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCT GCCCACCGCCCCTCCAGCCACTGGCACGAAGTGACTCATCT < 41bp 1 0.645477728998596 1 0.243779242038727 experiment 0.709044542002807 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459828 chr7:142459841 stopgain 0.095 1 34 hm5C_associated_SNPs_7624 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 38bp
chr7 142459841 142459841 1 + C A rs141847266 142459834 + 142459814 142459854 41 CGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCTCTGGCT CGCCCCTCCAGCCACTGGCACGAAGTGACTCATCTCTGGCT < 41bp 1 0.637863723721341 1 0.1578688621521 experiment 0.724272552557318 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459834 chr7:142459841 stopgain 0.095 1 28 hm5C_associated_SNPs_7625 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 38bp
chr7 142459841 142459841 1 + C A rs141847266 142459842 + 142459822 142459862 41 CAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAC CAGCCACTGGCACGAAGTGACTCATCTCTGGCTGGGGCAAC < 41bp 1 0.491548266352499 1 0.0375534892082214 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459842 chr7:142459841 stopgain 0.095 1 20 hm5C_associated_SNPs_7626 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 38bp
chr7 142459841 142459841 1 + C A rs141847266 142459844 + 142459824 142459864 41 GCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACAC GCCACTGGCACGAAGTGACTCATCTCTGGCTGGGGCAACAC < 41bp 1 0.578578276393407 1 0.0167372226715088 experiment 0.842843447213185 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459844 chr7:142459841 stopgain 0.095 1 18 hm5C_associated_SNPs_7627 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 38bp
chr7 142459841 142459841 1 + C A rs141847266 142459847 + 142459827 142459867 41 ACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACACTGC ACTGGCACGAAGTGACTCATCTCTGGCTGGGGCAACACTGC < 41bp 1 0.763228817811166 1 0.209535777568817 experiment 0.473542364377668 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459847 chr7:142459841 stopgain 0.095 1 15 hm5C_associated_SNPs_7628 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 38bp
chr7 142460313 142460313 1 + T C rs6666 142460295 + 142460275 142460315 41 CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGC CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGACGC < 41bp 1 0.406253899841132 1 0.643240809440613 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460295 chr7:142460313 synonymous SNV . 0 39 hm5C_associated_SNPs_7629 2 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 32bp
chr7 142460313 142460313 1 + T C rs6666 142460299 + 142460279 142460319 41 CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGACGCTCCT < 41bp 1 0.676885665575415 1 0.259492725133896 experiment 0.64622866884917 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460299 chr7:142460313 synonymous SNV . 0 35 hm5C_associated_SNPs_7630 2 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 32bp
chr7 142460313 142460313 1 + T C rs6666 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGACGAGCTGCAGTGCCTGGACGCTCCTGTG < 41bp 1 0.267759009699673 1 0.150490939617157 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460313 synonymous SNV . 0 32 hm5C_associated_SNPs_7631 2 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 32bp
chr7 142460313 142460313 1 + T C rs6666 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGCCTGGACGCTCCTGTGCTGAG < 41bp 1 0.175151852786788 1 0.167774438858032 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460313 synonymous SNV . 0 27 hm5C_associated_SNPs_7632 2 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 32bp
chr7 142460313 142460313 1 + T C rs6666 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGGACGCTCCTGTGCTGAGCCAGGCTA < 41bp 1 0.454526266693577 1 0.321734607219696 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460313 synonymous SNV . 0 19 hm5C_associated_SNPs_7633 2 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 32bp
chr7 142460313 142460313 1 + T C rs6666 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGGACGCTCCTGTGCTGAGCCAGGCTAAG < 41bp 1 0.188069858777767 1 0.358779191970825 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460313 synonymous SNV . 0 17 hm5C_associated_SNPs_7634 2 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 32bp
chr7 142460313 142460313 1 + T C rs6666 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGGACGCTCCTGTGCTGAGCCAGGCTAAGT < 41bp 1 0.454859955944743 1 0.146195262670517 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460313 synonymous SNV . 0 16 hm5C_associated_SNPs_7635 2 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 32bp
chr7 142460313 142460313 1 + T C rs6666 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGACGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA < 41bp 1 0.517053558975489 1 0.0758571326732635 experiment 0.965892882049022 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460313 synonymous SNV . 0 11 hm5C_associated_SNPs_7636 2 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 32bp
chr7 142460313 142460313 1 + T C rs6666 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGACGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC < 41bp 1 0.360834460012183 1 0.220748424530029 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460313 synonymous SNV . 0 6 hm5C_associated_SNPs_7637 2 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 32bp
chr7 142460313 142460313 1 + T C rs6666 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGACGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC < 41bp 1 0.560293894795666 1 0.674155116081238 experiment 0.879412210408669 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460313 synonymous SNV . 0 5 hm5C_associated_SNPs_7638 2 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 32bp
chr7 142460313 142460313 1 + T C rs6666 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC CGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC < 41bp 1 0.399015506183389 1 0.13581782579422 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460313 synonymous SNV . 0 1 hm5C_associated_SNPs_7639 2 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 32bp
chr7 142460335 142460335 1 + A G rs201550522 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTG < 41bp 1 0.449241167385288 1 0.300190389156342 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460335 nonsynonymous SNV 0.000 1 41 hm5C_associated_SNPs_7640 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 54bp
chr7 142460335 142460335 1 + A G rs201550522 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTG < 41bp 1 0.449241167385288 1 0.300190389156342 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460335 nonsynonymous SNV 0.000 1 41 hm5C_associated_SNPs_7640 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 84bp
chr7 142460335 142460335 1 + A G rs201550522 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTGAG < 41bp 1 0.247788331488896 1 0.380769908428192 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460335 nonsynonymous SNV 0.000 1 39 hm5C_associated_SNPs_7641 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 54bp
chr7 142460335 142460335 1 + A G rs201550522 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTGAG < 41bp 1 0.247788331488896 1 0.380769908428192 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460335 nonsynonymous SNV 0.000 1 39 hm5C_associated_SNPs_7641 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 84bp
chr7 142460335 142460335 1 + A G rs201550522 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTGAGT < 41bp 1 0.490385129952242 1 0.272218465805054 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460335 nonsynonymous SNV 0.000 1 38 hm5C_associated_SNPs_7642 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 54bp
chr7 142460335 142460335 1 + A G rs201550522 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTGAGT < 41bp 1 0.490385129952242 1 0.272218465805054 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460335 nonsynonymous SNV 0.000 1 38 hm5C_associated_SNPs_7642 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 84bp
chr7 142460335 142460335 1 + A G rs201550522 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTGAGTGTGAA < 41bp 1 0.502470946410802 1 0.0558144152164459 experiment 0.995058107178397 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460335 nonsynonymous SNV 0.000 1 33 hm5C_associated_SNPs_7643 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 54bp
chr7 142460335 142460335 1 + A G rs201550522 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTGAGTGTGAA < 41bp 1 0.502470946410802 1 0.0558144152164459 experiment 0.995058107178397 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460335 nonsynonymous SNV 0.000 1 33 hm5C_associated_SNPs_7643 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 84bp
chr7 142460335 142460335 1 + A G rs201550522 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTCCTGTGCTGAGCCAGGCTGAGTGTGAAGCCTC < 41bp 1 0.375244448861656 1 0.108085751533508 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460335 nonsynonymous SNV 0.000 1 28 hm5C_associated_SNPs_7644 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 54bp
chr7 142460335 142460335 1 + A G rs201550522 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTCCTGTGCTGAGCCAGGCTGAGTGTGAAGCCTC < 41bp 1 0.375244448861656 1 0.108085751533508 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460335 nonsynonymous SNV 0.000 1 28 hm5C_associated_SNPs_7644 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 84bp
chr7 142460335 142460335 1 + A G rs201550522 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTCCTGTGCTGAGCCAGGCTGAGTGTGAAGCCTCC < 41bp 1 0.531843226739507 1 0.446982085704803 experiment 0.936313546520986 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460335 nonsynonymous SNV 0.000 1 27 hm5C_associated_SNPs_7645 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 54bp
chr7 142460335 142460335 1 + A G rs201550522 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTCCTGTGCTGAGCCAGGCTGAGTGTGAAGCCTCC < 41bp 1 0.531843226739507 1 0.446982085704803 experiment 0.936313546520986 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460335 nonsynonymous SNV 0.000 1 27 hm5C_associated_SNPs_7645 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 84bp
chr7 142460335 142460335 1 + A G rs201550522 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTGTGCTGAGCCAGGCTGAGTGTGAAGCCTCCTACC < 41bp 1 0.560251429593057 1 0.167164117097855 experiment 0.879497140813886 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460335 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_7646 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 54bp
chr7 142460335 142460335 1 + A G rs201550522 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTGTGCTGAGCCAGGCTGAGTGTGAAGCCTCCTACC < 41bp 1 0.560251429593057 1 0.167164117097855 experiment 0.879497140813886 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460335 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_7646 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 84bp
chr7 142460335 142460335 1 + A G rs201550522 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAGCCAGGCTGAGTGTGAAGCCTCCTACCCTGGAAAGATTA < 41bp 1 0.0433724807598017 1 0.139708191156387 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460335 nonsynonymous SNV 0.000 1 11 hm5C_associated_SNPs_7647 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 54bp
chr7 142460335 142460335 1 + A G rs201550522 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAGCCAGGCTGAGTGTGAAGCCTCCTACCCTGGAAAGATTA < 41bp 1 0.0433724807598017 1 0.139708191156387 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460335 nonsynonymous SNV 0.000 1 11 hm5C_associated_SNPs_7647 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 84bp
chr7 142460335 142460335 1 + A G rs201550522 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AGCCAGGCTGAGTGTGAAGCCTCCTACCCTGGAAAGATTAC < 41bp 1 0.298542530591312 1 0.487904608249664 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460335 nonsynonymous SNV 0.000 1 10 hm5C_associated_SNPs_7648 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 54bp
chr7 142460335 142460335 1 + A G rs201550522 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AGCCAGGCTGAGTGTGAAGCCTCCTACCCTGGAAAGATTAC < 41bp 1 0.298542530591312 1 0.487904608249664 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460335 nonsynonymous SNV 0.000 1 10 hm5C_associated_SNPs_7648 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 84bp
chr7 142460335 142460335 1 + A G rs201550522 142460348 + 142460328 142460368 41 CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA CCAGGCTGAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA < 41bp 1 0.0244266386414872 1 0.0842559039592743 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460348 chr7:142460335 nonsynonymous SNV 0.000 1 8 hm5C_associated_SNPs_7649 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 54bp
chr7 142460335 142460335 1 + A G rs201550522 142460348 + 142460328 142460368 41 CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA CCAGGCTGAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA < 41bp 1 0.0244266386414872 1 0.0842559039592743 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460348 chr7:142460335 nonsynonymous SNV 0.000 1 8 hm5C_associated_SNPs_7649 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 84bp
chr7 142460335 142460335 1 + A G rs201550522 142460349 + 142460329 142460369 41 CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG CAGGCTGAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG < 41bp 1 0.195177901325939 1 0.135015100240707 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460349 chr7:142460335 nonsynonymous SNV 0.000 1 7 hm5C_associated_SNPs_7650 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 54bp
chr7 142460335 142460335 1 + A G rs201550522 142460349 + 142460329 142460369 41 CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG CAGGCTGAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG < 41bp 1 0.195177901325939 1 0.135015100240707 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460349 chr7:142460335 nonsynonymous SNV 0.000 1 7 hm5C_associated_SNPs_7650 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 84bp
chr7 142460335 142460335 1 + A G rs201550522 142460352 + 142460332 142460372 41 GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA GCTGAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA < 41bp 1 0.376313303653126 1 0.447751402854919 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460352 chr7:142460335 nonsynonymous SNV 0.000 1 4 hm5C_associated_SNPs_7651 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 54bp
chr7 142460335 142460335 1 + A G rs201550522 142460352 + 142460332 142460372 41 GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA GCTGAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA < 41bp 1 0.376313303653126 1 0.447751402854919 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460352 chr7:142460335 nonsynonymous SNV 0.000 1 4 hm5C_associated_SNPs_7651 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 84bp
chr7 142460335 142460335 1 + A G rs201550522 142460353 + 142460333 142460373 41 CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC CTGAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC < 41bp 1 0.312555597611984 1 0.621432721614838 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460353 chr7:142460335 nonsynonymous SNV 0.000 1 3 hm5C_associated_SNPs_7652 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 54bp
chr7 142460335 142460335 1 + A G rs201550522 142460353 + 142460333 142460373 41 CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC CTGAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC < 41bp 1 0.312555597611984 1 0.621432721614838 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460353 chr7:142460335 nonsynonymous SNV 0.000 1 3 hm5C_associated_SNPs_7652 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 84bp
chr7 142460394 142460394 1 + T C rs377124851 142460379 + 142460359 142460399 41 AAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG AAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTCGAGGG < 41bp 1 0.388880867993066 1 0.252645611763 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460379 chr7:142460394 synonymous SNV . 0 36 hm5C_associated_SNPs_7653 1 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 25bp
chr7 142460394 142460394 1 + T C rs377124851 142460388 + 142460368 142460408 41 AGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA AGCAACATGTTCTGTGTGGGCTTCCTCGAGGGAGGCAAGGA < 41bp 1 0.104188703463399 1 0.047391951084137 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460388 chr7:142460394 synonymous SNV . 0 27 hm5C_associated_SNPs_7654 1 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 25bp
chr7 142460394 142460394 1 + T C rs377124851 142460391 + 142460371 142460411 41 AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC AACATGTTCTGTGTGGGCTTCCTCGAGGGAGGCAAGGATTC < 41bp 1 0.0774010058940439 1 0.183925777673721 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460391 chr7:142460394 synonymous SNV . 0 24 hm5C_associated_SNPs_7655 1 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 25bp
chr7 142460394 142460394 1 + T C rs377124851 142460403 + 142460383 142460423 41 GTGGGCTTCCTTGAGGGAGGCAAGGATTCATGTCAGGTGAT GTGGGCTTCCTCGAGGGAGGCAAGGATTCATGTCAGGTGAT < 41bp 1 0.576131448224054 1 0.486284077167511 experiment 0.847737103551893 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460403 chr7:142460394 synonymous SNV . 0 12 hm5C_associated_SNPs_7656 1 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 25bp
chr7 142460394 142460394 1 + T C rs377124851 142460411 + 142460391 142460431 41 CCTTGAGGGAGGCAAGGATTCATGTCAGGTGATTTGACCAA CCTCGAGGGAGGCAAGGATTCATGTCAGGTGATTTGACCAA < 41bp 1 0.533209419866781 1 0.291917592287064 experiment 0.933581160266438 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460411 chr7:142460394 synonymous SNV . 0 4 hm5C_associated_SNPs_7657 1 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 25bp
chr7 142991809 142991809 1 + C T rs186256855 142991795 + 142991775 142991815 41 GCTCTGGAGGGGATGTGGACCACAGTACTCTAGTCACCCTC GCTCTGGAGGGGATGTGGACCACAGTACTCTAGTTACCCTC < 41bp 1 0.790597780077363 1 0.621505677700043 experiment 0.418804439845273 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CASP2 ENSG00000106144 CDS Human protein_coding chr7:142991795 chr7:142991809 synonymous SNV . 0 35 hm5C_associated_SNPs_7665 0 0 1 0 1 CASP2 chr7:142991866 5'GT 142991866 Upstream 58bp
chr7 143080323 143080323 1 + C A rs142720695 143080316 + 143080296 143080336 41 CTTTCTGCTGGCACAGGCTCCCCTCAACCTCCCAGCTTCAC CTTTCTGCTGGCACAGGCTCCCCTCAAACTCCCAGCTTCAC < 41bp 1 0.0291689172535378 1 0.0357969999313354 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZYX ENSG00000159840 CDS Human protein_coding chr7:143080316 chr7:143080323 nonsynonymous SNV 0.598 2 28 hm5C_associated_SNPs_7667 0 0 1 0 1 ZYX chr7:143080415 5'GT 143080415 Upstream 93bp
chr7 148990909 148990909 1 + A G rs541975721 148990895 + 148990875 148990915 41 AATGCATGAGACACAGATTCCACTCAGGAGAGAGAAGACGA AATGCATGAGACACAGATTCCACTCAGGAGAGAGGAGACGA < 41bp 1 0.154347954822507 1 0.0535017549991608 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LOC155060 ENSG00000204946 CDS Human protein_coding chr7:148990895 chr7:148990909 nonsynonymous SNV . 0 35 hm5C_associated_SNPs_7678 0 0 1 0 1 LOC155060 chr7:148990842 3'AG 148990842 Downstream 68bp
chr7 149419635 149419635 1 + T G rs75701347 149419643 + 149419623 149419663 41 GAGAGAGGGACCTCAGAGGCCGGTGAGAGGCGGGCTTTCCT GAGAGAGGGACCGCAGAGGCCGGTGAGAGGCGGGCTTTCCT < 41bp 1 0.412549931293135 1 0.462305575609207 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149419643 chr7:149419635 nonsynonymous SNV 0.000 0 13 hm5C_associated_SNPs_7686 0 0 1 0 1 KRBA1 chr7:149419644 5'GT 149419644 Upstream 10bp
chr7 150933623 150933623 1 + C T rs376421293 150933611 + 150933591 150933631 41 CCGAAGGTACCCTCATGTACCGGCTCCACAAACGCTTCAGC CCGAAGGTACCCTCATGTACCGGCTCCACAAATGCTTCAGC < 41bp 1 0.367919829459576 1 0.275407493114471 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150933611 chr7:150933623 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_7707 0 0 1 0 1 CHPF2 chr7:150933676 5'GT 150933676 Upstream 54bp
chr7 150933623 150933623 1 + C T rs376421293 150933614 + 150933594 150933634 41 AAGGTACCCTCATGTACCGGCTCCACAAACGCTTCAGCGCT AAGGTACCCTCATGTACCGGCTCCACAAATGCTTCAGCGCT < 41bp 1 0.333686025956213 1 0.88405168056488 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150933614 chr7:150933623 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_7708 0 0 1 0 1 CHPF2 chr7:150933676 5'GT 150933676 Upstream 54bp
chr7 150933623 150933623 1 + C T rs376421293 150933616 + 150933596 150933636 41 GGTACCCTCATGTACCGGCTCCACAAACGCTTCAGCGCTCT GGTACCCTCATGTACCGGCTCCACAAATGCTTCAGCGCTCT < 41bp 1 0.246345177231941 1 0.063422828912735 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150933616 chr7:150933623 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_7709 0 0 1 0 1 CHPF2 chr7:150933676 5'GT 150933676 Upstream 54bp
chr7 151722908 151722908 1 + G A rs546454494 151722901 + 151722881 151722921 41 TCCTGCGGGTCGGACTGGGGCTGTGGCGGGAGAGAAGATGC TCCTGCGGGTCGGACTGGGGCTGTGGCAGGAGAGAAGATGC < 41bp 1 0.676258088858413 1 0.341240763664246 experiment 0.647483822283173 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT11 ENSG00000178234 UTR5 Human protein_coding chr7:151722901 chr7:151722908 . . 0 28 hm5C_associated_SNPs_7711 0 0 1 0 1 GALNT11 chr7:151722969 5'GT 151722969 Upstream 62bp
chr7 151722908 151722908 1 + G A rs546454494 151722924 + 151722904 151722944 41 TGGCGGGAGAGAAGATGCCGCAGCCCGAGTCCCAGAAGGCG TGGCAGGAGAGAAGATGCCGCAGCCCGAGTCCCAGAAGGCG < 41bp 1 0.344238749111816 1 0.268348902463913 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT11 ENSG00000178234 UTR5 Human protein_coding chr7:151722924 chr7:151722908 . . 0 5 hm5C_associated_SNPs_7712 0 0 1 0 1 GALNT11 chr7:151722969 5'GT 151722969 Upstream 62bp
chr7 151722908 151722908 1 + G A rs546454494 151722927 + 151722907 151722947 41 CGGGAGAGAAGATGCCGCAGCCCGAGTCCCAGAAGGCGGCG CAGGAGAGAAGATGCCGCAGCCCGAGTCCCAGAAGGCGGCG < 41bp 1 0.788176872232733 1 0.377719342708588 experiment 0.423646255534534 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT11 ENSG00000178234 UTR5 Human protein_coding chr7:151722927 chr7:151722908 . . 0 2 hm5C_associated_SNPs_7713 0 0 1 0 1 GALNT11 chr7:151722969 5'GT 151722969 Upstream 62bp
chr7 151722908 151722908 1 + G A rs546454494 151722928 + 151722908 151722948 41 GGGAGAGAAGATGCCGCAGCCCGAGTCCCAGAAGGCGGCGA AGGAGAGAAGATGCCGCAGCCCGAGTCCCAGAAGGCGGCGA < 41bp 1 0.591188193363307 1 0.765236377716064 experiment 0.817623613273387 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT11 ENSG00000178234 UTR5 Human protein_coding chr7:151722928 chr7:151722908 . . 0 1 hm5C_associated_SNPs_7714 0 0 1 0 1 GALNT11 chr7:151722969 5'GT 151722969 Upstream 62bp
chr7 151817987 151817987 1 + C A rs143156028 151818003 + 151817983 151818023 41 CTCGCTCATCAGACCCGCCACGGCTCATGAAATGCCACGGG CTCGATCATCAGACCCGCCACGGCTCATGAAATGCCACGGG < 41bp 1 0.462303372154523 1 0.25760406255722 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151818003 chr7:151817987 synonymous SNV . 0 5 hm5C_associated_SNPs_7715 0 0 1 0 2 GALNT11 chr7:151817916 3'AG 151817916 Downstream 72bp
chr7 151817987 151817987 1 + C A rs143156028 151818003 + 151817983 151818023 41 CTCGCTCATCAGACCCGCCACGGCTCATGAAATGCCACGGG CTCGATCATCAGACCCGCCACGGCTCATGAAATGCCACGGG < 41bp 1 0.462303372154523 1 0.25760406255722 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151818003 chr7:151817987 synonymous SNV . 0 5 hm5C_associated_SNPs_7715 0 0 1 0 2 GALNT11 chr7:151818053 5'GT 151818053 Upstream 67bp
chr7 155534738 155534738 1 + G A rs75145238 155534723 + 155534703 155534743 41 TGGCGGGTTCCAGAAGCTCACAGGGAAAGACGGAAGTGAAA TGGCGGGTTCCAGAAGCTCACAGGGAAAGACGGAAATGAAA < 41bp 1 0.693735957050916 1 0.36903578042984 experiment 0.612528085898167 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM33 ENSG00000184863 CDS Human protein_coding chr7:155534723 chr7:155534738 nonsynonymous SNV 0.671 0 36 hm5C_associated_SNPs_7719 0 0 1 0 1 RBM33 chr7:155534800 5'GT 155534800 Upstream 63bp
chr7 157000224 157000224 1 + C T rs17837726 157000240 + 157000220 157000260 41 ATAACGAATTCTTCGGTGATCCCATAGAAGGTAAGGATTTT ATAATGAATTCTTCGGTGATCCCATAGAAGGTAAGGATTTT < 41bp 1 0.0414717183892202 1 0.129860371351242 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE3C ENSG00000009335 CDS Human protein_coding chr7:157000240 chr7:157000224 synonymous SNV . 0 5 hm5C_associated_SNPs_7749 0 0 1 0 1 UBE3C chr7:157000249 5'GT 157000249 Upstream 26bp
chr7 157000243 157000243 1 + A G rs62001023 157000240 + 157000220 157000260 41 ATAACGAATTCTTCGGTGATCCCATAGAAGGTAAGGATTTT ATAACGAATTCTTCGGTGATCCCGTAGAAGGTAAGGATTTT < 41bp 1 0.10828026070355 1 0.160988360643387 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE3C ENSG00000009335 CDS Human protein_coding chr7:157000240 chr7:157000243 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_7750 0 0 1 0 1 UBE3C chr7:157000249 5'GT 157000249 Upstream 7bp
chr7 158734630 158734630 1 + C T rs199624775 158734618 + 158734598 158734638 41 CTTTCTTCCTGGTCATAGGCCGGCTGTTCGGACGGAAGCAT CTTTCTTCCTGGTCATAGGCCGGCTGTTCGGATGGAAGCAT < 41bp 1 0.489808148014589 1 0.413379192352295 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR60 ENSG00000126870 CDS Human protein_coding chr7:158734618 chr7:158734630 synonymous SNV . 0 33 hm5C_associated_SNPs_7760 0 0 1 0 1 WDR60 chr7:158734616 3'AG 158734616 Downstream 15bp
chr8 1791537 1791537 1 + G A rs186575667 1791535 + 1791515 1791555 41 GCAGGAGCTCCTTCCCTTAACAGAGCTGAGAGAGGCATCTG GCAGGAGCTCCTTCCCTTAACAAAGCTGAGAGAGGCATCTG < 41bp 1 0.579121123140775 1 0.465227484703064 experiment 0.84175775371845 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1791535 chr8:1791537 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_7762 0 0 1 0 2 ARHGEF10 chr8:1791519 3'AG 1791519 Downstream 19bp
chr8 1791537 1791537 1 + G A rs186575667 1791535 + 1791515 1791555 41 GCAGGAGCTCCTTCCCTTAACAGAGCTGAGAGAGGCATCTG GCAGGAGCTCCTTCCCTTAACAAAGCTGAGAGAGGCATCTG < 41bp 1 0.579121123140775 1 0.465227484703064 experiment 0.84175775371845 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1791535 chr8:1791537 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_7762 0 0 1 0 2 ARHGEF10 chr8:1791602 5'GT 1791602 Upstream 66bp
chr8 1791537 1791537 1 + G A rs186575667 1791550 + 1791530 1791570 41 CTTAACAGAGCTGAGAGAGGCATCTGGAGCTGCAGCATGGA CTTAACAAAGCTGAGAGAGGCATCTGGAGCTGCAGCATGGA < 41bp 1 0.27846354322407 1 0.165222257375717 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1791550 chr8:1791537 nonsynonymous SNV 0.002 0 8 hm5C_associated_SNPs_7763 0 0 1 0 2 ARHGEF10 chr8:1791519 3'AG 1791519 Downstream 19bp
chr8 1791537 1791537 1 + G A rs186575667 1791550 + 1791530 1791570 41 CTTAACAGAGCTGAGAGAGGCATCTGGAGCTGCAGCATGGA CTTAACAAAGCTGAGAGAGGCATCTGGAGCTGCAGCATGGA < 41bp 1 0.27846354322407 1 0.165222257375717 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1791550 chr8:1791537 nonsynonymous SNV 0.002 0 8 hm5C_associated_SNPs_7763 0 0 1 0 2 ARHGEF10 chr8:1791602 5'GT 1791602 Upstream 66bp
chr8 1806229 1806229 1 + A C rs4875950 1806226 + 1806206 1806246 41 CCAGAAGCGGACAGACAGGCCCCATCCGCCCCTGAGACAGG CCAGAAGCGGACAGACAGGCCCCCTCCGCCCCTGAGACAGG < 41bp 1 0.133837078090123 1 0.11646831035614 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1806226 chr8:1806229 synonymous SNV . 0 24 hm5C_associated_SNPs_7764 0 0 1 0 1 ARHGEF10 chr8:1806281 5'GT 1806281 Upstream 53bp
chr8 1851447 1851447 1 + G A rs201067899 1851453 + 1851433 1851473 41 CCTGTTGCTTGTAGGACATGCTGAAGAACACCTCCAAAGGC CCTGTTGCTTGTAGAACATGCTGAAGAACACCTCCAAAGGC < 41bp 1 0.680608649385523 1 0.449548363685608 experiment 0.638782701228954 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1851453 chr8:1851447 nonsynonymous SNV 0.964 4 15 hm5C_associated_SNPs_7765 0 0 1 0 1 ARHGEF10 chr8:1851447 3'AG 1851447 Downstream 1bp
chr8 6566360 6566360 1 + C A rs138274785 6566346 + 6566326 6566366 41 TCTACCAAGCGCTGGACGACCGGCTCTACTGCGTCTACCAG TCTACCAAGCGCTGGACGACCGGCTCTACTGCGTATACCAG < 41bp 1 0.736909731440916 1 0.432391375303268 experiment 0.526180537118168 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGPAT5 ENSG00000155189 CDS Human protein_coding chr8:6566346 chr8:6566360 synonymous SNV . 0 35 hm5C_associated_SNPs_7767 0 0 1 0 1 AGPAT5 chr8:6566408 5'GT 6566408 Upstream 49bp
chr8 6582437 6582437 1 + A G rs116874845 6582451 + 6582431 6582471 41 TAATATATTTAGCAAATCATCAAAGCACAGGTTTGTATTTC TAATATGTTTAGCAAATCATCAAAGCACAGGTTTGTATTTC < 41bp 1 0.255958553030206 1 0.246810048818588 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGPAT5 ENSG00000155189 CDS Human protein_coding chr8:6582451 chr8:6582437 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_7768 0 0 1 0 2 AGPAT5 chr8:6582391 3'AG 6582391 Downstream 47bp
chr8 6582437 6582437 1 + A G rs116874845 6582451 + 6582431 6582471 41 TAATATATTTAGCAAATCATCAAAGCACAGGTTTGTATTTC TAATATGTTTAGCAAATCATCAAAGCACAGGTTTGTATTTC < 41bp 1 0.255958553030206 1 0.246810048818588 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGPAT5 ENSG00000155189 CDS Human protein_coding chr8:6582451 chr8:6582437 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_7768 0 0 1 0 2 AGPAT5 chr8:6582460 5'GT 6582460 Upstream 24bp
chr8 8093762 8093762 1 + G A rs568343457 8093774 + 8093754 8093794 41 GCTGGACTGGGACGTAGTGACGGTCCATCAGCGCTCTGCCT GCTGGACTAGGACGTAGTGACGGTCCATCAGCGCTCTGCCT < 41bp 1 0.254262096940339 1 0.901839971542358 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM86B3P ENSG00000173295;ENSG00000253981 ncRNA_exonic Human other chr8:8093774 chr8:8093762 . . 0 9 hm5C_associated_SNPs_7769 0 0 0 0 1 FAM86B3P chr8:8093821 5'GT 8093821 Upstream 60bp
chr8 9564419 9564419 1 + C T rs34433162 9564436 + 9564416 9564456 41 TAGCCATGGCGCTGATCCTACATTAGTCAACTGCCATGGCA TAGTCATGGCGCTGATCCTACATTAGTCAACTGCCATGGCA < 41bp 1 0.31627637414493 1 0.0302234292030334 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TNKS ENSG00000173273 CDS Human protein_coding chr8:9564436 chr8:9564419 synonymous SNV . 0 4 hm5C_associated_SNPs_7771 0 0 1 0 2 TNKS chr8:9564321 3'AG 9564321 Downstream 99bp
chr8 9564419 9564419 1 + C T rs34433162 9564436 + 9564416 9564456 41 TAGCCATGGCGCTGATCCTACATTAGTCAACTGCCATGGCA TAGTCATGGCGCTGATCCTACATTAGTCAACTGCCATGGCA < 41bp 1 0.31627637414493 1 0.0302234292030334 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TNKS ENSG00000173273 CDS Human protein_coding chr8:9564436 chr8:9564419 synonymous SNV . 0 4 hm5C_associated_SNPs_7771 0 0 1 0 2 TNKS chr8:9564507 5'GT 9564507 Upstream 89bp
chr8 9564437 9564437 1 + A G rs7006985 9564436 + 9564416 9564456 41 TAGCCATGGCGCTGATCCTACATTAGTCAACTGCCATGGCA TAGCCATGGCGCTGATCCTACGTTAGTCAACTGCCATGGCA < 41bp 1 0.37735786596181 1 0.0560300946235657 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TNKS ENSG00000173273 CDS Human protein_coding chr8:9564436 chr8:9564437 synonymous SNV . 0 22 hm5C_associated_SNPs_7772 0 0 1 0 1 TNKS chr8:9564507 5'GT 9564507 Upstream 71bp
chr8 11695970 11695970 1 + A G rs189378553 11695990 + 11695970 11696010 41 AGAATCTTCCCAACTGTCAGCTGATTTCCCGAAGCCACTAC GGAATCTTCCCAACTGTCAGCTGATTTCCCGAAGCCACTAC < 41bp 1 0.473260097632326 1 0.186774253845215 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FDFT1 ENSG00000079459 CDS Human protein_coding chr8:11695990 chr8:11695970 nonsynonymous SNV 0.934 1 1 hm5C_associated_SNPs_7787 0 0 1 0 1 FDFT1 chr8:11695897 3'AG 11695897 Downstream 74bp
chr8 17794733 17794733 1 + G A rs34804690 17794729 + 17794709 17794749 41 GAAAGTGATAAAAGAGTAACCAATGATATTTCTCCGGAGTC GAAAGTGATAAAAGAGTAACCAATAATATTTCTCCGGAGTC < 41bp 1 0.437673408523432 1 0.361956834793091 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCM1 ENSG00000078674 CDS Human protein_coding chr8:17794729 chr8:17794733 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_7799 0 0 1 0 1 PCM1 chr8:17794643 3'AG 17794643 Downstream 91bp
chr8 17817571 17817571 1 + G A rs558115555 17817579 + 17817559 17817599 41 GCATCAAATTTGGATGATTTCTACCCAGCAGAAGAAGACAC GCATCAAATTTGAATGATTTCTACCCAGCAGAAGAAGACAC < 41bp 1 0.313662393644742 1 0.0492197275161743 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCM1 ENSG00000078674 CDS Human protein_coding chr8:17817579 chr8:17817571 nonsynonymous SNV 0.998 0 13 hm5C_associated_SNPs_7800 0 0 1 0 1 PCM1 chr8:17817523 3'AG 17817523 Downstream 49bp
chr8 17819572 17819572 1 + C T rs3780103 17819570 + 17819550 17819590 41 CTGCTAGTGTGGGTAACTGTCCCACCAAAAAATATATGCCA CTGCTAGTGTGGGTAACTGTCCTACCAAAAAATATATGCCA < 41bp 1 0.0593087544194543 1 0.303266763687134 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PCM1 ENSG00000078674 CDS Human protein_coding chr8:17819570 chr8:17819572 synonymous SNV . 0 23 hm5C_associated_SNPs_7801 0 0 1 0 1 PCM1 chr8:17819543 3'AG 17819543 Downstream 30bp
chr8 17819572 17819572 1 + C T rs3780103 17819571 + 17819551 17819591 41 TGCTAGTGTGGGTAACTGTCCCACCAAAAAATATATGCCAG TGCTAGTGTGGGTAACTGTCCTACCAAAAAATATATGCCAG < 41bp 1 0.308903141819187 1 0.453431934118271 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCM1 ENSG00000078674 CDS Human protein_coding chr8:17819571 chr8:17819572 synonymous SNV . 0 22 hm5C_associated_SNPs_7802 0 0 1 0 1 PCM1 chr8:17819543 3'AG 17819543 Downstream 30bp
chr8 20073976 20073976 1 + C A rs138887483 20073985 + 20073965 20074005 41 GAGGGGCAGATCTATGTGGACAGACAGCTGCACAACAGACA GAGGGGCAGATATATGTGGACAGACAGCTGCACAACAGACA < 41bp 1 0.238858684620891 1 0.187987506389618 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20073985 chr8:20073976 synonymous SNV . 0 12 hm5C_associated_SNPs_7806 0 0 1 0 2 ATP6V1B2 chr8:20073924 3'AG 20073924 Downstream 53bp
chr8 20073976 20073976 1 + C A rs138887483 20073985 + 20073965 20074005 41 GAGGGGCAGATCTATGTGGACAGACAGCTGCACAACAGACA GAGGGGCAGATATATGTGGACAGACAGCTGCACAACAGACA < 41bp 1 0.238858684620891 1 0.187987506389618 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20073985 chr8:20073976 synonymous SNV . 0 12 hm5C_associated_SNPs_7806 0 0 1 0 2 ATP6V1B2 chr8:20074006 5'GT 20074006 Upstream 31bp
chr8 21882086 21882086 1 + G A rs377061270 21882104 + 21882084 21882124 41 AGGGCAGCTGTGGAGTGGGGCGCGGCAATGCGCCCCTTAAC AGAGCAGCTGTGGAGTGGGGCGCGGCAATGCGCCCCTTAAC < 41bp 1 0.643642407121404 1 0.733716130256653 experiment 0.712715185757191 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPM2 ENSG00000158806 UTR5 Human protein_coding chr8:21882104 chr8:21882086 . . 0 3 hm5C_associated_SNPs_7807 0 0 0 0 1 NPM2 chr8:21882134 5'GT 21882134 Upstream 49bp
chr8 21882131 21882131 1 + C G rs572345500 21882114 + 21882094 21882134 41 TGGAGTGGGGCGCGGCAATGCGCCCCTTAACAGCCCTCCAG TGGAGTGGGGCGCGGCAATGCGCCCCTTAACAGCCCTGCAG < 41bp 1 0.576534786911151 1 0.297832310199738 experiment 0.846930426177698 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPM2 ENSG00000158806 UTR5 Human protein_coding chr8:21882114 chr8:21882131 . . 0 38 hm5C_associated_SNPs_7808 0 0 1 0 1 NPM2 chr8:21882134 5'GT 21882134 Upstream 4bp
chr8 21882131 21882131 1 + C G rs572345500 21882116 + 21882096 21882136 41 GAGTGGGGCGCGGCAATGCGCCCCTTAACAGCCCTCCAGGT GAGTGGGGCGCGGCAATGCGCCCCTTAACAGCCCTGCAGGT < 41bp 1 0.245614016254906 1 0.0516405403614044 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPM2 ENSG00000158806 UTR5 Human protein_coding chr8:21882116 chr8:21882131 . . 0 36 hm5C_associated_SNPs_7809 0 0 1 0 1 NPM2 chr8:21882134 5'GT 21882134 Upstream 4bp
chr8 21882131 21882131 1 + C G rs572345500 21882117 + 21882097 21882137 41 AGTGGGGCGCGGCAATGCGCCCCTTAACAGCCCTCCAGGTG AGTGGGGCGCGGCAATGCGCCCCTTAACAGCCCTGCAGGTG < 41bp 1 0.0827684522301982 1 0.179212391376495 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPM2 ENSG00000158806 UTR5 Human protein_coding chr8:21882117 chr8:21882131 . . 0 35 hm5C_associated_SNPs_7810 0 0 1 0 1 NPM2 chr8:21882134 5'GT 21882134 Upstream 4bp
chr8 21882131 21882131 1 + C G rs572345500 21882118 + 21882098 21882138 41 GTGGGGCGCGGCAATGCGCCCCTTAACAGCCCTCCAGGTGA GTGGGGCGCGGCAATGCGCCCCTTAACAGCCCTGCAGGTGA < 41bp 1 0.130840618226827 1 0.121904730796814 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPM2 ENSG00000158806 UTR5 Human protein_coding chr8:21882118 chr8:21882131 . . 0 34 hm5C_associated_SNPs_7811 0 0 1 0 1 NPM2 chr8:21882134 5'GT 21882134 Upstream 4bp
chr8 21882131 21882131 1 + C G rs572345500 21882119 + 21882099 21882139 41 TGGGGCGCGGCAATGCGCCCCTTAACAGCCCTCCAGGTGAT TGGGGCGCGGCAATGCGCCCCTTAACAGCCCTGCAGGTGAT < 41bp 1 0.201820749943597 1 0.312233686447144 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPM2 ENSG00000158806 UTR5 Human protein_coding chr8:21882119 chr8:21882131 . . 0 33 hm5C_associated_SNPs_7812 0 0 1 0 1 NPM2 chr8:21882134 5'GT 21882134 Upstream 4bp
chr8 21957351 21957351 1 + C T rs557506421 21957337 + 21957317 21957357 41 CACAGACCGGCAGCCTGAAGCCCCCGGGGACAACCCCCACA CACAGACCGGCAGCCTGAAGCCCCCGGGGACAACTCCCACA < 41bp 1 0.278005463843724 1 0.0925238728523254 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21957337 chr8:21957351 nonsynonymous SNV 0.008 0 35 hm5C_associated_SNPs_7816 0 0 0 0 1 FAM160B2 chr8:21957404 5'GT 21957404 Upstream 54bp
chr8 21960129 21960129 1 + C T rs547014170 21960138 + 21960118 21960158 41 CGGGCCAGGCTCCTGGGGAGCAGTGAGTACCAAGGGTGCCA CGGGCCAGGCTTCTGGGGAGCAGTGAGTACCAAGGGTGCCA < 41bp 1 0.328785084100434 1 0.41685488820076 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21960138 chr8:21960129 nonsynonymous SNV 0.991 1 12 hm5C_associated_SNPs_7817 0 0 1 0 2 FAM160B2 chr8:21960039 3'AG 21960039 Downstream 91bp
chr8 21960129 21960129 1 + C T rs547014170 21960138 + 21960118 21960158 41 CGGGCCAGGCTCCTGGGGAGCAGTGAGTACCAAGGGTGCCA CGGGCCAGGCTTCTGGGGAGCAGTGAGTACCAAGGGTGCCA < 41bp 1 0.328785084100434 1 0.41685488820076 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21960138 chr8:21960129 nonsynonymous SNV 0.991 1 12 hm5C_associated_SNPs_7817 0 0 1 0 2 FAM160B2 chr8:21960139 5'GT 21960139 Upstream 11bp
chr8 22429238 22429238 1 + G A rs150882165 22429234 + 22429214 22429254 41 TTCCTGTCAACTCCCAGAATCTTGGCACCCCTGGTCCAGCT TTCCTGTCAACTCCCAGAATCTTGACACCCCTGGTCCAGCT < 41bp 1 0.385752345043544 1 0.434633880853653 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22429234 chr8:22429238 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_7820 0 0 1 0 2 SORBS3 chr8:22429231 3'AG 22429231 Downstream 8bp
chr8 22429238 22429238 1 + G A rs150882165 22429234 + 22429214 22429254 41 TTCCTGTCAACTCCCAGAATCTTGGCACCCCTGGTCCAGCT TTCCTGTCAACTCCCAGAATCTTGACACCCCTGGTCCAGCT < 41bp 1 0.385752345043544 1 0.434633880853653 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22429234 chr8:22429238 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_7820 0 0 1 0 2 SORBS3 chr8:22429334 5'GT 22429334 Upstream 97bp
chr8 22862115 22862115 1 + C T rs61732770 22862102 + 22862082 22862122 41 GCTGGCCACGCATGTGCCCACAGTATGGGCCATCGACCAAT GCTGGCCACGCATGTGCCCACAGTATGGGCCATTGACCAAT < 41bp 1 0.675885740977372 1 0.117255836725235 experiment 0.648228518045255 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22862102 chr8:22862115 synonymous SNV . 0 34 hm5C_associated_SNPs_7823 0 0 0 0 1 RHOBTB2 chr8:22862139 5'GT 22862139 Upstream 25bp
chr8 23147920 23147920 1 + G A rs189694680 23147913 + 23147893 23147933 41 GTGGCAGAGGAGGAAGAGGACGAAGAGGAGGTGGAAGAGGA GTGGCAGAGGAGGAAGAGGACGAAGAGAAGGTGGAAGAGGA < 41bp 1 0.591169522649628 1 0.732540309429169 experiment 0.817660954700744 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control R3HCC1 ENSG00000104679 CDS Human protein_coding chr8:23147913 chr8:23147920 nonsynonymous SNV 0.027 0 28 hm5C_associated_SNPs_7825 0 0 1 0 1 R3HCC1 chr8:23147982 5'GT 23147982 Upstream 63bp
chr8 23152334 23152334 1 + A C rs15946 23152333 + 23152313 23152353 41 GCTCAAGATCCGGCCCCTCACACAGGGAACCAAGCAGTCAA GCTCAAGATCCGGCCCCTCACCCAGGGAACCAAGCAGTCAA < 41bp 1 0.715997790701311 1 0.217075854539871 experiment 0.568004418597377 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control R3HCC1 ENSG00000104679 CDS Human protein_coding chr8:23152333 chr8:23152334 synonymous SNV . 0 22 hm5C_associated_SNPs_7826 0 0 1 0 2 R3HCC1 chr8:23152282 3'AG 23152282 Downstream 53bp
chr8 23152334 23152334 1 + A C rs15946 23152333 + 23152313 23152353 41 GCTCAAGATCCGGCCCCTCACACAGGGAACCAAGCAGTCAA GCTCAAGATCCGGCCCCTCACCCAGGGAACCAAGCAGTCAA < 41bp 1 0.715997790701311 1 0.217075854539871 experiment 0.568004418597377 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control R3HCC1 ENSG00000104679 CDS Human protein_coding chr8:23152333 chr8:23152334 synonymous SNV . 0 22 hm5C_associated_SNPs_7826 0 0 1 0 2 R3HCC1 chr8:23152377 5'GT 23152377 Upstream 44bp
chr8 25149590 25149590 1 + G A rs35475676 25149584 + 25149564 25149604 41 CAGCTGCAGCAGATGACGTACAGCCTGATCGAGTGGCGGTC CAGCTGCAGCAGATGACGTACAGCCTAATCGAGTGGCGGTC < 41bp 1 0.244931717464221 1 0.644474864006042 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25149584 chr8:25149590 synonymous SNV . 0 27 hm5C_associated_SNPs_7832 0 0 1 0 2 DOCK5 chr8:25149540 3'AG 25149540 Downstream 51bp
chr8 25149590 25149590 1 + G A rs35475676 25149584 + 25149564 25149604 41 CAGCTGCAGCAGATGACGTACAGCCTGATCGAGTGGCGGTC CAGCTGCAGCAGATGACGTACAGCCTAATCGAGTGGCGGTC < 41bp 1 0.244931717464221 1 0.644474864006042 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25149584 chr8:25149590 synonymous SNV . 0 27 hm5C_associated_SNPs_7832 0 0 1 0 2 DOCK5 chr8:25149688 5'GT 25149688 Upstream 99bp
chr8 25149593 25149593 1 + C A rs142717615 25149584 + 25149564 25149604 41 CAGCTGCAGCAGATGACGTACAGCCTGATCGAGTGGCGGTC CAGCTGCAGCAGATGACGTACAGCCTGATAGAGTGGCGGTC < 41bp 1 0.235024288142709 1 0.445205390453339 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25149584 chr8:25149593 synonymous SNV . 0 30 hm5C_associated_SNPs_7833 0 0 1 0 2 DOCK5 chr8:25149540 3'AG 25149540 Downstream 54bp
chr8 25149593 25149593 1 + C A rs142717615 25149584 + 25149564 25149604 41 CAGCTGCAGCAGATGACGTACAGCCTGATCGAGTGGCGGTC CAGCTGCAGCAGATGACGTACAGCCTGATAGAGTGGCGGTC < 41bp 1 0.235024288142709 1 0.445205390453339 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25149584 chr8:25149593 synonymous SNV . 0 30 hm5C_associated_SNPs_7833 0 0 1 0 2 DOCK5 chr8:25149688 5'GT 25149688 Upstream 96bp
chr8 25149593 25149593 1 + C A rs142717615 25149611 + 25149591 25149631 41 ATCGAGTGGCGGTCCCAGATCCTGTCTGGGACGCTCCCCAA ATAGAGTGGCGGTCCCAGATCCTGTCTGGGACGCTCCCCAA < 41bp 1 0.345176476946412 1 0.667917788028717 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25149611 chr8:25149593 synonymous SNV . 0 3 hm5C_associated_SNPs_7834 0 0 1 0 2 DOCK5 chr8:25149540 3'AG 25149540 Downstream 54bp
chr8 25149593 25149593 1 + C A rs142717615 25149611 + 25149591 25149631 41 ATCGAGTGGCGGTCCCAGATCCTGTCTGGGACGCTCCCCAA ATAGAGTGGCGGTCCCAGATCCTGTCTGGGACGCTCCCCAA < 41bp 1 0.345176476946412 1 0.667917788028717 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25149611 chr8:25149593 synonymous SNV . 0 3 hm5C_associated_SNPs_7834 0 0 1 0 2 DOCK5 chr8:25149688 5'GT 25149688 Upstream 96bp
chr8 26223857 26223857 1 + C T rs34109536 26223842 + 26223822 26223862 41 TTCCCCCAGGTGCATGAATACCTCAGAAGTAAACTCTGTTC TTCCCCCAGGTGCATGAATACCTCAGAAGTAAACTTTGTTC < 41bp 1 0.231614213817784 1 0.0443031489849091 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223842 chr8:26223857 synonymous SNV . 0 36 hm5C_associated_SNPs_7837 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 27bp
chr8 26223857 26223857 1 + C T rs34109536 26223842 + 26223822 26223862 41 TTCCCCCAGGTGCATGAATACCTCAGAAGTAAACTCTGTTC TTCCCCCAGGTGCATGAATACCTCAGAAGTAAACTTTGTTC < 41bp 1 0.231614213817784 1 0.0443031489849091 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223842 chr8:26223857 synonymous SNV . 0 36 hm5C_associated_SNPs_7837 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 66bp
chr8 26223857 26223857 1 + C T rs34109536 26223843 + 26223823 26223863 41 TCCCCCAGGTGCATGAATACCTCAGAAGTAAACTCTGTTCA TCCCCCAGGTGCATGAATACCTCAGAAGTAAACTTTGTTCA < 41bp 1 0.513591050197875 1 0.240082174539566 experiment 0.972817899604251 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223843 chr8:26223857 synonymous SNV . 0 35 hm5C_associated_SNPs_7838 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 27bp
chr8 26223857 26223857 1 + C T rs34109536 26223843 + 26223823 26223863 41 TCCCCCAGGTGCATGAATACCTCAGAAGTAAACTCTGTTCA TCCCCCAGGTGCATGAATACCTCAGAAGTAAACTTTGTTCA < 41bp 1 0.513591050197875 1 0.240082174539566 experiment 0.972817899604251 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223843 chr8:26223857 synonymous SNV . 0 35 hm5C_associated_SNPs_7838 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 66bp
chr8 26223857 26223857 1 + C T rs34109536 26223845 + 26223825 26223865 41 CCCCAGGTGCATGAATACCTCAGAAGTAAACTCTGTTCACT CCCCAGGTGCATGAATACCTCAGAAGTAAACTTTGTTCACT < 41bp 1 0.614479416694714 1 0.426822066307068 experiment 0.771041166610573 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223845 chr8:26223857 synonymous SNV . 0 33 hm5C_associated_SNPs_7839 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 27bp
chr8 26223857 26223857 1 + C T rs34109536 26223845 + 26223825 26223865 41 CCCCAGGTGCATGAATACCTCAGAAGTAAACTCTGTTCACT CCCCAGGTGCATGAATACCTCAGAAGTAAACTTTGTTCACT < 41bp 1 0.614479416694714 1 0.426822066307068 experiment 0.771041166610573 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223845 chr8:26223857 synonymous SNV . 0 33 hm5C_associated_SNPs_7839 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 66bp
chr8 26223857 26223857 1 + C T rs34109536 26223855 + 26223835 26223875 41 ATGAATACCTCAGAAGTAAACTCTGTTCACTGTATGAAAAT ATGAATACCTCAGAAGTAAACTTTGTTCACTGTATGAAAAT < 41bp 1 0.14039956481017 1 0.0488056242465973 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223855 chr8:26223857 synonymous SNV . 0 23 hm5C_associated_SNPs_7840 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 27bp
chr8 26223857 26223857 1 + C T rs34109536 26223855 + 26223835 26223875 41 ATGAATACCTCAGAAGTAAACTCTGTTCACTGTATGAAAAT ATGAATACCTCAGAAGTAAACTTTGTTCACTGTATGAAAAT < 41bp 1 0.14039956481017 1 0.0488056242465973 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223855 chr8:26223857 synonymous SNV . 0 23 hm5C_associated_SNPs_7840 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 66bp
chr8 26223857 26223857 1 + C T rs34109536 26223862 + 26223842 26223882 41 CCTCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTGCA CCTCAGAAGTAAACTTTGTTCACTGTATGAAAATGACTGCA < 41bp 1 0.326418038062608 1 0.203027725219727 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223862 chr8:26223857 synonymous SNV . 0 16 hm5C_associated_SNPs_7841 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 27bp
chr8 26223857 26223857 1 + C T rs34109536 26223862 + 26223842 26223882 41 CCTCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTGCA CCTCAGAAGTAAACTTTGTTCACTGTATGAAAATGACTGCA < 41bp 1 0.326418038062608 1 0.203027725219727 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223862 chr8:26223857 synonymous SNV . 0 16 hm5C_associated_SNPs_7841 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 66bp
chr8 26223857 26223857 1 + C T rs34109536 26223864 + 26223844 26223884 41 TCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTGCATA TCAGAAGTAAACTTTGTTCACTGTATGAAAATGACTGCATA < 41bp 1 0.502928196804881 1 0.0952263474464417 experiment 0.994143606390239 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223864 chr8:26223857 synonymous SNV . 0 14 hm5C_associated_SNPs_7842 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 27bp
chr8 26223857 26223857 1 + C T rs34109536 26223864 + 26223844 26223884 41 TCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTGCATA TCAGAAGTAAACTTTGTTCACTGTATGAAAATGACTGCATA < 41bp 1 0.502928196804881 1 0.0952263474464417 experiment 0.994143606390239 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223864 chr8:26223857 synonymous SNV . 0 14 hm5C_associated_SNPs_7842 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 66bp
chr8 27288501 27288501 1 + A G rs201457448 27288507 + 27288487 27288527 41 CCGGCTTCGCCAACATCGACCAGGAGACCTACCGCTGTGAA CCGGCTTCGCCAACGTCGACCAGGAGACCTACCGCTGTGAA < 41bp 1 0.733853333658499 1 0.96644926071167 experiment 0.532293332683001 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTK2B ENSG00000120899 CDS Human protein_coding chr8:27288507 chr8:27288501 nonsynonymous SNV 0.975 2 15 hm5C_associated_SNPs_7860 0 0 1 0 1 PTK2B chr8:27288533 5'GT 27288533 Upstream 33bp
chr8 27288514 27288514 1 + C A rs61738530 27288507 + 27288487 27288527 41 CCGGCTTCGCCAACATCGACCAGGAGACCTACCGCTGTGAA CCGGCTTCGCCAACATCGACCAGGAGAACTACCGCTGTGAA < 41bp 1 0.718634716902657 1 0.96591579914093 experiment 0.562730566194686 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTK2B ENSG00000120899 CDS Human protein_coding chr8:27288507 chr8:27288514 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_7861 0 0 1 0 1 PTK2B chr8:27288533 5'GT 27288533 Upstream 20bp
chr8 27369416 27369416 1 + G A rs574326427 27369415 + 27369395 27369435 41 AGTGACATGAGCCATGGGTACGTGACAGTAAAGGTGAGTCA AGTGACATGAGCCATGGGTACATGACAGTAAAGGTGAGTCA < 41bp 1 0.625645600500212 1 0.275936216115952 experiment 0.748708798999575 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27369415 chr8:27369416 nonsynonymous SNV 0.064 4 22 hm5C_associated_SNPs_7862 0 0 1 0 2 EPHX2 chr8:27369353 3'AG 27369353 Downstream 64bp
chr8 27369416 27369416 1 + G A rs574326427 27369415 + 27369395 27369435 41 AGTGACATGAGCCATGGGTACGTGACAGTAAAGGTGAGTCA AGTGACATGAGCCATGGGTACATGACAGTAAAGGTGAGTCA < 41bp 1 0.625645600500212 1 0.275936216115952 experiment 0.748708798999575 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27369415 chr8:27369416 nonsynonymous SNV 0.064 4 22 hm5C_associated_SNPs_7862 0 0 1 0 2 EPHX2 chr8:27369427 5'GT 27369427 Upstream 12bp
chr8 27491676 27491676 1 + C T rs199997030 27491690 + 27491670 27491710 41 TCCAGCCGCCTGCAGCGGGGCCCTCCTGAGGCCCCAGAGGA TCCAGCTGCCTGCAGCGGGGCCCTCCTGAGGCCCCAGAGGA < 41bp 1 0.132847284432097 1 0.0810327231884003 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control SCARA3 ENSG00000168077 UTR5 Human protein_coding chr8:27491690 chr8:27491676 . . 0 7 hm5C_associated_SNPs_7864 0 0 1 0 1 SCARA3 chr8:27491724 5'GT 27491724 Upstream 49bp
chr8 27491676 27491676 1 + C T rs199997030 27491691 + 27491671 27491711 41 CCAGCCGCCTGCAGCGGGGCCCTCCTGAGGCCCCAGAGGAA CCAGCTGCCTGCAGCGGGGCCCTCCTGAGGCCCCAGAGGAA < 41bp 1 0.177424041905386 1 0.140509724617004 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SCARA3 ENSG00000168077 UTR5 Human protein_coding chr8:27491691 chr8:27491676 . . 0 6 hm5C_associated_SNPs_7865 0 0 1 0 1 SCARA3 chr8:27491724 5'GT 27491724 Upstream 49bp
chr8 30623803 30623803 1 + T G rs115749166 30623821 + 30623801 30623841 41 CTTCCTTTCCCAGACGGCCTCTGGCAGTGGAGGGAGGCCAG CTGCCTTTCCCAGACGGCCTCTGGCAGTGGAGGGAGGCCAG < 41bp 1 0.657909983639411 1 0.558465480804443 experiment 0.684180032721177 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBXN8 ENSG00000104691 ncRNA_exonic Human protein_coding chr8:30623821 chr8:30623803 . 0.852 0 3 hm5C_associated_SNPs_7872 0 0 1 0 1 UBXN8 chr8:30623743 3'AG 30623743 Downstream 61bp
chr8 31024733 31024733 1 + G C rs186424616 31024734 + 31024714 31024754 41 AGAAGCAAGGAAGAAGTAGGCATCAATACTGAGGTATTAAT AGAAGCAAGGAAGAAGTAGCCATCAATACTGAGGTATTAAT < 41bp 1 0.301343878771142 1 0.437572658061981 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WRN ENSG00000165392 CDS Human protein_coding chr8:31024734 chr8:31024733 nonsynonymous SNV 0.199 0 20 hm5C_associated_SNPs_7873 0 0 1 0 1 WRN chr8:31024746 5'GT 31024746 Upstream 14bp
chr8 37554668 37554668 1 + C A rs76445150 37554680 + 37554660 37554700 41 CAGCTGGACGCCAAGAAGAGCCCCTTGGCGCTGCTGGCTCA CAGCTGGAAGCCAAGAAGAGCCCCTTGGCGCTGCTGGCTCA < 41bp 1 0.156348062048693 1 0.22454622387886 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF703 ENSG00000183779 CDS Human protein_coding chr8:37554680 chr8:37554668 nonsynonymous SNV 0.999 3 9 hm5C_associated_SNPs_7876 0 0 1 0 1 ZNF703 chr8:37554663 3'AG 37554663 Downstream 6bp
chr8 37914689 37914689 1 + C T rs201186533 37914699 + 37914679 37914719 41 CCCACCATTCCGGGGGTCACCAGCCCTTCCAGTGATGAGCC CCCACCATTCTGGGGGTCACCAGCCCTTCCAGTGATGAGCC < 41bp 1 0.549679172899546 1 0.482555270195007 experiment 0.900641654200908 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4EBP1 ENSG00000187840 CDS Human protein_coding chr8:37914699 chr8:37914689 nonsynonymous SNV 0.154 4 11 hm5C_associated_SNPs_7878 0 0 1 0 2 EIF4EBP1 chr8:37914599 3'AG 37914599 Downstream 91bp
chr8 37914689 37914689 1 + C T rs201186533 37914699 + 37914679 37914719 41 CCCACCATTCCGGGGGTCACCAGCCCTTCCAGTGATGAGCC CCCACCATTCTGGGGGTCACCAGCCCTTCCAGTGATGAGCC < 41bp 1 0.549679172899546 1 0.482555270195007 experiment 0.900641654200908 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4EBP1 ENSG00000187840 CDS Human protein_coding chr8:37914699 chr8:37914689 nonsynonymous SNV 0.154 4 11 hm5C_associated_SNPs_7878 0 0 1 0 2 EIF4EBP1 chr8:37914778 5'GT 37914778 Upstream 90bp
chr8 38899570 38899570 1 + T C rs78451751 38899577 + 38899557 38899597 41 CTGATGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTG CTGATGAAGCCTACAGTGCTCCCTCCTGTGGTAATAAGTTG < 41bp 1 0.0967992519329792 1 0.0946750640869141 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38899577 chr8:38899570 synonymous SNV . 0 14 hm5C_associated_SNPs_7881 1 0 1 0 1 ADAM9 chr8:38899636 5'GT 38899636 Upstream 67bp
chr8 38899570 38899570 1 + T C rs78451751 38899581 + 38899561 38899601 41 TGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTGGTGG TGAAGCCTACAGTGCTCCCTCCTGTGGTAATAAGTTGGTGG < 41bp 1 0.180695872976099 1 0.597919225692749 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38899581 chr8:38899570 synonymous SNV . 0 10 hm5C_associated_SNPs_7882 1 0 1 0 1 ADAM9 chr8:38899636 5'GT 38899636 Upstream 67bp
chr8 41355096 41355096 1 + C T rs17656952 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTTGGCGGCCAGTCATATCTCGAAGGTTGT < 41bp 1 0.13170485894955 1 0.165201902389526 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355096 synonymous SNV . 0 14 hm5C_associated_SNPs_7883 0 0 1 2 2 GOLGA7 chr8:41355028 3'AG 41355028 Downstream 69bp
chr8 41355096 41355096 1 + C T rs17656952 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTTGGCGGCCAGTCATATCTCGAAGGTTGT < 41bp 1 0.13170485894955 1 0.165201902389526 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355096 synonymous SNV . 0 14 hm5C_associated_SNPs_7883 0 0 1 2 2 GOLGA7 chr8:41355180 5'GT 41355180 Upstream 85bp
chr8 42226805 42226805 1 + C G rs3136797 42226797 + 42226777 42226817 41 TGTTCATTTTAGGGTGTTTGCCAGCTTCCCAGTAAAAATGA TGTTCATTTTAGGGTGTTTGCCAGCTTCGCAGTAAAAATGA < 41bp 1 0.314359608668353 1 0.412336885929108 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLB ENSG00000070501 CDS Human protein_coding chr8:42226797 chr8:42226805 nonsynonymous SNV 0.978 1 29 hm5C_associated_SNPs_7898 0 1 1 0 1 POLB chr8:42226853 5'GT 42226853 Upstream 49bp
chr8 42752245 42752245 1 + G A rs367925456 42752240 + 42752220 42752260 41 GAGCGGCGGCGGTGTCTGGCCAGGCGGTAGGCGCTGCCTGG GAGCGGCGGCGGTGTCTGGCCAGGCAGTAGGCGCTGCCTGG < 41bp 1 0.760933733489275 1 0.797325730323792 experiment 0.478132533021449 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HOOK3 ENSG00000168172 UTR5 Human protein_coding chr8:42752240 chr8:42752245 . . 0 26 hm5C_associated_SNPs_7899 0 0 1 0 1 HOOK3 chr8:42752331 5'GT 42752331 Upstream 87bp
chr8 42752245 42752245 1 + G A rs367925456 42752244 + 42752224 42752264 41 GGCGGCGGTGTCTGGCCAGGCGGTAGGCGCTGCCTGGCCGC GGCGGCGGTGTCTGGCCAGGCAGTAGGCGCTGCCTGGCCGC < 41bp 1 0.774175923610412 1 0.550630927085876 experiment 0.451648152779176 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HOOK3 ENSG00000168172 UTR5 Human protein_coding chr8:42752244 chr8:42752245 . . 0 22 hm5C_associated_SNPs_7900 0 0 1 0 1 HOOK3 chr8:42752331 5'GT 42752331 Upstream 87bp
chr8 42752245 42752245 1 + G A rs367925456 42752256 + 42752236 42752276 41 TGGCCAGGCGGTAGGCGCTGCCTGGCCGCGGCGGGGAAGAT TGGCCAGGCAGTAGGCGCTGCCTGGCCGCGGCGGGGAAGAT < 41bp 1 0.365286193079714 1 0.0496912896633148 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HOOK3 ENSG00000168172 UTR5 Human protein_coding chr8:42752256 chr8:42752245 . . 0 10 hm5C_associated_SNPs_7901 0 0 1 0 1 HOOK3 chr8:42752331 5'GT 42752331 Upstream 87bp
chr8 42752245 42752245 1 + G A rs367925456 42752257 + 42752237 42752277 41 GGCCAGGCGGTAGGCGCTGCCTGGCCGCGGCGGGGAAGATG GGCCAGGCAGTAGGCGCTGCCTGGCCGCGGCGGGGAAGATG < 41bp 1 0.708964977379429 1 0.0599156022071838 experiment 0.582070045241142 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HOOK3 ENSG00000168172 UTR5 Human protein_coding chr8:42752257 chr8:42752245 . . 0 9 hm5C_associated_SNPs_7902 0 0 1 0 1 HOOK3 chr8:42752331 5'GT 42752331 Upstream 87bp
chr8 42752245 42752245 1 + G A rs367925456 42752261 + 42752241 42752281 41 AGGCGGTAGGCGCTGCCTGGCCGCGGCGGGGAAGATGTTCA AGGCAGTAGGCGCTGCCTGGCCGCGGCGGGGAAGATGTTCA < 41bp 1 0.56493690548946 1 0.271091401576996 experiment 0.870126189021079 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HOOK3 ENSG00000168172 UTR5 Human protein_coding chr8:42752261 chr8:42752245 . . 0 5 hm5C_associated_SNPs_7903 0 0 1 0 1 HOOK3 chr8:42752331 5'GT 42752331 Upstream 87bp
chr8 48877227 48877227 1 + T C rs145966797 48877243 + 48877223 48877263 41 ACCATTCAACGCATTGAAGACTAAGAATATGAGAAACCTGA ACCACTCAACGCATTGAAGACTAAGAATATGAGAAACCTGA < 41bp 1 0.182768517911881 1 0.378124624490738 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48877243 chr8:48877227 nonsynonymous SNV 0.983 2 5 hm5C_associated_SNPs_7927 0 0 1 3 1 MCM4 chr8:48877134 3'AG 48877134 Downstream 94bp
chr8 54793603 54793603 1 + G A rs112791546 54793600 + 54793580 54793620 41 GCACGGCGGACGGAGGCGAGCCGGCCGGGGCTTCCTCCCCG GCACGGCGGACGGAGGCGAGCCGACCGGGGCTTCCTCCCCG < 41bp 1 0.425226739428523 1 0.168008387088776 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RGS20 ENSG00000147509 CDS Human protein_coding chr8:54793600 chr8:54793603 nonsynonymous SNV 0.196 0 24 hm5C_associated_SNPs_7929 0 0 0 0 1 RGS20 chr8:54793644 5'GT 54793644 Upstream 42bp
chr8 54793603 54793603 1 + G A rs112791546 54793601 + 54793581 54793621 41 CACGGCGGACGGAGGCGAGCCGGCCGGGGCTTCCTCCCCGG CACGGCGGACGGAGGCGAGCCGACCGGGGCTTCCTCCCCGG < 41bp 1 0.630400210490625 1 0.609808623790741 experiment 0.73919957901875 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RGS20 ENSG00000147509 CDS Human protein_coding chr8:54793601 chr8:54793603 nonsynonymous SNV 0.196 0 23 hm5C_associated_SNPs_7930 0 0 0 0 1 RGS20 chr8:54793644 5'GT 54793644 Upstream 42bp
chr8 54793603 54793603 1 + G A rs112791546 54793617 + 54793597 54793637 41 GAGCCGGCCGGGGCTTCCTCCCCGGCCGGCAGGGTGGACGG GAGCCGACCGGGGCTTCCTCCCCGGCCGGCAGGGTGGACGG < 41bp 1 0.733381361573706 1 0.743829607963562 experiment 0.533237276852588 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RGS20 ENSG00000147509 CDS Human protein_coding chr8:54793617 chr8:54793603 nonsynonymous SNV 0.196 0 7 hm5C_associated_SNPs_7931 0 0 0 0 1 RGS20 chr8:54793644 5'GT 54793644 Upstream 42bp
chr8 54793603 54793603 1 + G A rs112791546 54793618 + 54793598 54793638 41 AGCCGGCCGGGGCTTCCTCCCCGGCCGGCAGGGTGGACGGT AGCCGACCGGGGCTTCCTCCCCGGCCGGCAGGGTGGACGGT < 41bp 1 0.431493420750763 1 0.42524516582489 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RGS20 ENSG00000147509 CDS Human protein_coding chr8:54793618 chr8:54793603 nonsynonymous SNV 0.196 0 6 hm5C_associated_SNPs_7932 0 0 0 0 1 RGS20 chr8:54793644 5'GT 54793644 Upstream 42bp
chr8 54793603 54793603 1 + G A rs112791546 54793619 + 54793599 54793639 41 GCCGGCCGGGGCTTCCTCCCCGGCCGGCAGGGTGGACGGTG GCCGACCGGGGCTTCCTCCCCGGCCGGCAGGGTGGACGGTG < 41bp 1 0.697277882612398 1 0.492544442415237 experiment 0.605444234775205 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RGS20 ENSG00000147509 CDS Human protein_coding chr8:54793619 chr8:54793603 nonsynonymous SNV 0.196 0 5 hm5C_associated_SNPs_7933 0 0 0 0 1 RGS20 chr8:54793644 5'GT 54793644 Upstream 42bp
chr8 54793603 54793603 1 + G A rs112791546 54793622 + 54793602 54793642 41 GGCCGGGGCTTCCTCCCCGGCCGGCAGGGTGGACGGTGGGC GACCGGGGCTTCCTCCCCGGCCGGCAGGGTGGACGGTGGGC < 41bp 1 0.293458739176256 1 0.377801328897476 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RGS20 ENSG00000147509 CDS Human protein_coding chr8:54793622 chr8:54793603 nonsynonymous SNV 0.196 0 2 hm5C_associated_SNPs_7934 0 0 0 0 1 RGS20 chr8:54793644 5'GT 54793644 Upstream 42bp
chr8 56866452 56866452 1 + G A rs2227980 56866453 + 56866433 56866473 41 TTAGTCCCAAGCCACAGAAGCCATGGGATAAAGATGCCTGG TTAGTCCCAAGCCACAGAAACCATGGGATAAAGATGCCTGG < 41bp 1 0.133566549020738 1 0.319285571575165 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56866453 chr8:56866452 synonymous SNV . 0 20 hm5C_associated_SNPs_7935 0 0 1 0 2 LYN chr8:56866391 3'AG 56866391 Downstream 62bp
chr8 56866452 56866452 1 + G A rs2227980 56866453 + 56866433 56866473 41 TTAGTCCCAAGCCACAGAAGCCATGGGATAAAGATGCCTGG TTAGTCCCAAGCCACAGAAACCATGGGATAAAGATGCCTGG < 41bp 1 0.133566549020738 1 0.319285571575165 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56866453 chr8:56866452 synonymous SNV . 0 20 hm5C_associated_SNPs_7935 0 0 1 0 2 LYN chr8:56866543 5'GT 56866543 Upstream 92bp
chr8 68074137 68074137 1 + G A rs16933182 68074141 + 68074121 68074161 41 GTTGACAGCATCATACGTTCCTTTATTCATGTATGTACTTT GTTGACAGCATCATACATTCCTTTATTCATGTATGTACTTT < 41bp 1 0.251894460447583 1 0.025249183177948 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68074141 chr8:68074137 nonsynonymous SNV 0.999 0 17 hm5C_associated_SNPs_7951 1 0 0 0 2 CSPP1 chr8:68074046 3'AG 68074046 Downstream 92bp
chr8 68074137 68074137 1 + G A rs16933182 68074141 + 68074121 68074161 41 GTTGACAGCATCATACGTTCCTTTATTCATGTATGTACTTT GTTGACAGCATCATACATTCCTTTATTCATGTATGTACTTT < 41bp 1 0.251894460447583 1 0.025249183177948 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68074141 chr8:68074137 nonsynonymous SNV 0.999 0 17 hm5C_associated_SNPs_7951 1 0 0 0 2 CSPP1 chr8:68074150 5'GT 68074150 Upstream 14bp
chr8 84316225 84316225 1 + C T rs35504602 84316233 + 84316213 84316253 41 TAACACTCACCGCGAGGGTCCACGGCTTCATTCTTGAAGTC TAACACTCACCGTGAGGGTCCACGGCTTCATTCTTGAAGTC < 41bp 1 0.461921706971027 1 0.116049140691757 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LINC01419 ENSG00000253898 ncRNA_exonic Human lincRNA chr8:84316233 chr8:84316225 . . 0 13 hm5C_associated_SNPs_7960 0 0 0 0 1 LINC01419 chr8:84316304 5'GT 84316304 Upstream 80bp
chr8 86038952 86038952 1 + G A rs114202224 86038944 + 86038924 86038964 41 TCCCTTGTTGAACAGCTAGACCAAGAGAGAGAGAAGAGATG TCCCTTGTTGAACAGCTAGACCAAGAGAAAGAGAAGAGATG < 41bp 1 0.194663092647545 1 0.224572211503983 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRCC1 ENSG00000133739 CDS Human protein_coding chr8:86038944 chr8:86038952 nonsynonymous SNV 1.000 0 29 hm5C_associated_SNPs_7961 0 0 0 0 1 LRRCC1 chr8:86038924 3'AG 86038924 Downstream 29bp
chr8 87526724 87526724 1 + A C rs144996394 87526741 + 87526721 87526761 41 GCCAACCTGTTCTCCACCGTCGCTCGACTTCCACCTCTAAG GCCCACCTGTTCTCCACCGTCGCTCGACTTCCACCTCTAAG < 41bp 1 0.349451273283941 1 0.271183162927628 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE3 ENSG00000085719 UTR5 Human protein_coding chr8:87526741 chr8:87526724 . . 0 4 hm5C_associated_SNPs_7962 0 0 1 0 1 CPNE3 chr8:87526769 5'GT 87526769 Upstream 46bp
chr8 92090657 92090657 1 + C A rs143832637 92090658 + 92090638 92090678 41 ATTGAAAACTTAACAGGAGCCAGACATATGGAAAGTGAGAA ATTGAAAACTTAACAGGAGACAGACATATGGAAAGTGAGAA < 41bp 1 0.496625970360612 1 0.292937755584717 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OTUD6B ENSG00000155100 CDS Human protein_coding chr8:92090658 chr8:92090657 nonsynonymous SNV 0.997 1 20 hm5C_associated_SNPs_7970 0 0 1 0 1 OTUD6B chr8:92090584 3'AG 92090584 Downstream 74bp
chr8 97657582 97657582 1 + T G rs528850549 97657596 + 97657576 97657616 41 GCGAGCTTAGTCCTGGGAGCCGCCTCCGTCGCCGCCGTCAG GCGAGCGTAGTCCTGGGAGCCGCCTCCGTCGCCGCCGTCAG < 41bp 1 0.619548025976129 1 0.640456140041351 experiment 0.760903948047743 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPQ ENSG00000104324 UTR5 Human protein_coding chr8:97657596 chr8:97657582 . . 0 7 hm5C_associated_SNPs_7975 0 0 1 0 1 CPQ chr8:97657630 5'GT 97657630 Upstream 49bp
chr8 98657020 98657020 1 + C A rs113646142 98657015 + 98656995 98657035 41 CAAGCGGGAGGAGGCGGCGGCCGTGCCGGCCGCGGCCCCCG CAAGCGGGAGGAGGCGGCGGCCGTGACGGCCGCGGCCCCCG < 41bp 1 0.596527237941985 1 0.575117528438568 experiment 0.80694552411603 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98657015 chr8:98657020 nonsynonymous SNV 0.039 1 26 hm5C_associated_SNPs_7976 0 0 1 0 1 MTDH chr8:98657115 5'GT 98657115 Upstream 96bp
chr8 98657020 98657020 1 + C A rs113646142 98657027 + 98657007 98657047 41 GGCGGCGGCCGTGCCGGCCGCGGCCCCCGACGACCTGGCCT GGCGGCGGCCGTGACGGCCGCGGCCCCCGACGACCTGGCCT < 41bp 1 0.75811597639578 1 0.770707011222839 experiment 0.48376804720844 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98657027 chr8:98657020 nonsynonymous SNV 0.039 1 14 hm5C_associated_SNPs_7977 0 0 1 0 1 MTDH chr8:98657115 5'GT 98657115 Upstream 96bp
chr8 98657041 98657041 1 + C G rs188271601 98657024 + 98657004 98657044 41 GGAGGCGGCGGCCGTGCCGGCCGCGGCCCCCGACGACCTGG GGAGGCGGCGGCCGTGCCGGCCGCGGCCCCCGACGACGTGG < 41bp 1 0.774888686257127 1 0.428721606731415 experiment 0.450222627485745 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98657024 chr8:98657041 nonsynonymous SNV 0.112 0 38 hm5C_associated_SNPs_7978 0 0 1 0 1 MTDH chr8:98657115 5'GT 98657115 Upstream 75bp
chr8 98657041 98657041 1 + C G rs188271601 98657027 + 98657007 98657047 41 GGCGGCGGCCGTGCCGGCCGCGGCCCCCGACGACCTGGCCT GGCGGCGGCCGTGCCGGCCGCGGCCCCCGACGACGTGGCCT < 41bp 1 0.757295145813465 1 0.691762328147888 experiment 0.48540970837307 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98657027 chr8:98657041 nonsynonymous SNV 0.112 0 35 hm5C_associated_SNPs_7979 0 0 1 0 1 MTDH chr8:98657115 5'GT 98657115 Upstream 75bp
chr8 100182333 100182333 1 + G C rs140848350 100182330 + 100182310 100182350 41 GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAGC GATCTTACTGCTTACCTGTACCACTTATTCCCTCTTTCAGC < 41bp 1 0.0509726506884614 1 0.0569774508476257 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100182330 chr8:100182333 nonsynonymous SNV 0.987 0 24 hm5C_associated_SNPs_7982 3 0 1 0 2 VPS13B chr8:100182267 3'AG 100182267 Downstream 67bp
chr8 100182333 100182333 1 + G C rs140848350 100182330 + 100182310 100182350 41 GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAGC GATCTTACTGCTTACCTGTACCACTTATTCCCTCTTTCAGC < 41bp 1 0.0509726506884614 1 0.0569774508476257 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100182330 chr8:100182333 nonsynonymous SNV 0.987 0 24 hm5C_associated_SNPs_7982 3 0 1 0 2 VPS13B chr8:100182391 5'GT 100182391 Upstream 59bp
chr8 102381113 102381113 1 + C T rs76180726 102381132 + 102381112 102381152 41 TCTTGATTCCACGTTCCCTCCACAAAATGCCTGGCGAAGCC TTTTGATTCCACGTTCCCTCCACAAAATGCCTGGCGAAGCC < 41bp 1 0.672364436112818 1 0.657117307186127 experiment 0.655271127774364 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NACAP1 ENSG00000228224 ncRNA_exonic Human transcribed_processed_pseudogene chr8:102381132 chr8:102381113 . . 0 2 hm5C_associated_SNPs_7984 0 0 0 0 1 NACAP1 chr8:102381023 3'AG 102381023 Downstream 91bp
chr8 104438333 104438333 1 + A G rs185916745 104438331 + 104438311 104438351 41 TGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCC TGGAAAATGGATGGGCCAGGCTGTGGAGACGAGGAAGAGCC < 41bp 1 0.652012243873526 1 0.488642185926437 experiment 0.695975512252949 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438331 chr8:104438333 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_7991 0 0 1 0 2 DCAF13 chr8:104438284 3'AG 104438284 Downstream 50bp
chr8 104438333 104438333 1 + A G rs185916745 104438331 + 104438311 104438351 41 TGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCC TGGAAAATGGATGGGCCAGGCTGTGGAGACGAGGAAGAGCC < 41bp 1 0.652012243873526 1 0.488642185926437 experiment 0.695975512252949 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438331 chr8:104438333 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_7991 0 0 1 0 2 DCAF13 chr8:104438373 5'GT 104438373 Upstream 41bp
chr8 104438340 104438340 1 + C T rs113982117 104438331 + 104438311 104438351 41 TGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCC TGGAAAATGGATGGGCCAGGCTATGGAGATGAGGAAGAGCC < 41bp 1 0.463149632880263 1 0.274929493665695 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438331 chr8:104438340 synonymous SNV . 0 30 hm5C_associated_SNPs_7992 0 0 1 0 2 DCAF13 chr8:104438284 3'AG 104438284 Downstream 57bp
chr8 104438340 104438340 1 + C T rs113982117 104438331 + 104438311 104438351 41 TGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCC TGGAAAATGGATGGGCCAGGCTATGGAGATGAGGAAGAGCC < 41bp 1 0.463149632880263 1 0.274929493665695 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438331 chr8:104438340 synonymous SNV . 0 30 hm5C_associated_SNPs_7992 0 0 1 0 2 DCAF13 chr8:104438373 5'GT 104438373 Upstream 34bp
chr8 104438346 104438346 1 + A G rs367722339 104438331 + 104438311 104438351 41 TGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCC TGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAGGAGCC < 41bp 1 0.53236861467128 1 0.339720249176025 experiment 0.93526277065744 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438331 chr8:104438346 synonymous SNV . 0 36 hm5C_associated_SNPs_7993 0 0 1 0 2 DCAF13 chr8:104438284 3'AG 104438284 Downstream 63bp
chr8 104438346 104438346 1 + A G rs367722339 104438331 + 104438311 104438351 41 TGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCC TGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAGGAGCC < 41bp 1 0.53236861467128 1 0.339720249176025 experiment 0.93526277065744 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438331 chr8:104438346 synonymous SNV . 0 36 hm5C_associated_SNPs_7993 0 0 1 0 2 DCAF13 chr8:104438373 5'GT 104438373 Upstream 28bp
chr8 104452460 104452460 1 + T C rs139400754 104452461 + 104452441 104452481 41 GATCTGATGAAATGAACATTCGCCTGTGGAAAGCTAATGCT GATCTGATGAAATGAACATCCGCCTGTGGAAAGCTAATGCT < 41bp 1 0.704617154516913 1 0.245075881481171 experiment 0.590765690966174 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104452461 chr8:104452460 synonymous SNV . 0 20 hm5C_associated_SNPs_7994 0 0 1 0 1 DCAF13 chr8:104452364 3'AG 104452364 Downstream 97bp
chr8 107754473 107754473 1 + G A rs1681904 107754474 + 107754454 107754494 41 TTGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC TTGGTGCGTTAGCATCTGAACCACTGAAAGTGAGTGATGGC < 41bp 1 0.0768543113175255 1 0.0341335237026215 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754474 chr8:107754473 synonymous SNV . 0 20 hm5C_associated_SNPs_7995 0 0 0 1 2 OXR1 chr8:107754450 3'AG 107754450 Downstream 24bp
chr8 107754473 107754473 1 + G A rs1681904 107754474 + 107754454 107754494 41 TTGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC TTGGTGCGTTAGCATCTGAACCACTGAAAGTGAGTGATGGC < 41bp 1 0.0768543113175255 1 0.0341335237026215 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754474 chr8:107754473 synonymous SNV . 0 20 hm5C_associated_SNPs_7995 0 0 0 1 2 OXR1 chr8:107754545 5'GT 107754545 Upstream 73bp
chr8 107754473 107754473 1 + G A rs1681904 107754475 + 107754455 107754495 41 TGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT TGGTGCGTTAGCATCTGAACCACTGAAAGTGAGTGATGGCT < 41bp 1 0.184446076882453 1 0.101689368486404 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754475 chr8:107754473 synonymous SNV . 0 19 hm5C_associated_SNPs_7996 0 0 0 1 2 OXR1 chr8:107754450 3'AG 107754450 Downstream 24bp
chr8 107754473 107754473 1 + G A rs1681904 107754475 + 107754455 107754495 41 TGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT TGGTGCGTTAGCATCTGAACCACTGAAAGTGAGTGATGGCT < 41bp 1 0.184446076882453 1 0.101689368486404 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754475 chr8:107754473 synonymous SNV . 0 19 hm5C_associated_SNPs_7996 0 0 0 1 2 OXR1 chr8:107754545 5'GT 107754545 Upstream 73bp
chr8 120220762 120220762 1 + C G rs552500910 120220765 + 120220745 120220785 41 CCGAACCCCGCCGTGTCCTTCCCGCCGCCCCGGGGTCACCC CCGAACCCCGCCGTGTCGTTCCCGCCGCCCCGGGGTCACCC < 41bp 1 0.704442483001194 1 0.17110338807106 experiment 0.591115033997611 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MAL2 ENSG00000147676 CDS Human protein_coding chr8:120220765 chr8:120220762 synonymous SNV . 0 18 hm5C_associated_SNPs_7997 0 0 1 0 1 MAL2 chr8:120220844 5'GT 120220844 Upstream 83bp
chr8 121259922 121259922 1 + C T rs61738288 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTACGTGGGATCCCCCATCTTCCCCGGTGAAAGGCTATA < 41bp 1 0.0680273362390912 1 0.0496649146080017 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259922 synonymous SNV . 0 13 hm5C_associated_SNPs_7998 0 0 0 0 2 COL14A1 chr8:121259852 3'AG 121259852 Downstream 71bp
chr8 121259922 121259922 1 + C T rs61738288 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTACGTGGGATCCCCCATCTTCCCCGGTGAAAGGCTATA < 41bp 1 0.0680273362390912 1 0.0496649146080017 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259922 synonymous SNV . 0 13 hm5C_associated_SNPs_7998 0 0 0 0 2 COL14A1 chr8:121259974 5'GT 121259974 Upstream 53bp
chr8 121259922 121259922 1 + C T rs61738288 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGATCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT < 41bp 1 0.400341047540479 1 0.189350813627243 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259922 synonymous SNV . 0 9 hm5C_associated_SNPs_7999 0 0 0 0 2 COL14A1 chr8:121259852 3'AG 121259852 Downstream 71bp
chr8 121259922 121259922 1 + C T rs61738288 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGATCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT < 41bp 1 0.400341047540479 1 0.189350813627243 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259922 synonymous SNV . 0 9 hm5C_associated_SNPs_7999 0 0 0 0 2 COL14A1 chr8:121259974 5'GT 121259974 Upstream 53bp
chr8 121259936 121259936 1 + C A rs2305606 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTACGTGGGACCCCCCATCTTCCCAGGTGAAAGGCTATA < 41bp 1 0.0806334403294268 1 0.150198340415955 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259936 nonsynonymous SNV 0.010 3 27 hm5C_associated_SNPs_8000 0 0 0 0 2 COL14A1 chr8:121259852 3'AG 121259852 Downstream 85bp
chr8 121259936 121259936 1 + C A rs2305606 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTACGTGGGACCCCCCATCTTCCCAGGTGAAAGGCTATA < 41bp 1 0.0806334403294268 1 0.150198340415955 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259936 nonsynonymous SNV 0.010 3 27 hm5C_associated_SNPs_8000 0 0 0 0 2 COL14A1 chr8:121259974 5'GT 121259974 Upstream 39bp
chr8 121259936 121259936 1 + C A rs2305606 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGACCCCCCATCTTCCCAGGTGAAAGGCTATAGAAT < 41bp 1 0.318496264261684 1 0.325822293758392 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259936 nonsynonymous SNV 0.010 3 23 hm5C_associated_SNPs_8001 0 0 0 0 2 COL14A1 chr8:121259852 3'AG 121259852 Downstream 85bp
chr8 121259936 121259936 1 + C A rs2305606 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGACCCCCCATCTTCCCAGGTGAAAGGCTATAGAAT < 41bp 1 0.318496264261684 1 0.325822293758392 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259936 nonsynonymous SNV 0.010 3 23 hm5C_associated_SNPs_8001 0 0 0 0 2 COL14A1 chr8:121259974 5'GT 121259974 Upstream 39bp
chr8 126021414 126021414 1 + A T rs118130263 126021423 + 126021403 126021443 41 ATTTGTTTTAGAATGCACCACAGTTTAAAGCAAATCATGCT ATTTGTTTTAGTATGCACCACAGTTTAAAGCAAATCATGCT < 41bp 1 0.0661537425324856 1 0.295370638370514 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SQLE ENSG00000104549 CDS Human protein_coding chr8:126021423 chr8:126021414 nonsynonymous SNV 0.995 4 12 hm5C_associated_SNPs_8020 0 0 1 0 1 SQLE chr8:126021414 3'AG 126021414 Downstream 1bp
chr8 129108823 129108823 1 + C T rs11604 129108803 + 129108783 129108823 41 CCCAGATTCACAAGCCCCACCAAGAGGATCACCCCAGGAAC CCCAGATTCACAAGCCCCACCAAGAGGATCACCCCAGGAAT < 41bp 1 0.663478073423269 1 0.618604183197021 experiment 0.673043853153461 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PVT1 ENSG00000249859 ncRNA_exonic Human lincRNA chr8:129108803 chr8:129108823 . . 0 41 hm5C_associated_SNPs_8029 0 0 1 0 2 PVT1 chr8:129108764 3'AG 129108764 Downstream 60bp
chr8 129108823 129108823 1 + C T rs11604 129108803 + 129108783 129108823 41 CCCAGATTCACAAGCCCCACCAAGAGGATCACCCCAGGAAC CCCAGATTCACAAGCCCCACCAAGAGGATCACCCCAGGAAT < 41bp 1 0.663478073423269 1 0.618604183197021 experiment 0.673043853153461 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PVT1 ENSG00000249859 ncRNA_exonic Human lincRNA chr8:129108803 chr8:129108823 . . 0 41 hm5C_associated_SNPs_8029 0 0 1 0 2 PVT1 chr8:129108900 5'GT 129108900 Upstream 78bp
chr8 145065682 145065682 1 + G A rs201456230 145065698 + 145065678 145065718 41 AAGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTTC AAGGAGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTTC < 41bp 1 0.191467219764488 1 0.063848465681076 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065698 chr8:145065682 synonymous SNV . 0 5 hm5C_associated_SNPs_8036 0 0 1 0 1 GRINA chr8:145065770 5'GT 145065770 Upstream 89bp
chr8 145065682 145065682 1 + G A rs201456230 145065699 + 145065679 145065719 41 AGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTTCC AGGAGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTTCC < 41bp 1 0.165657520602746 1 0.0994962155818939 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065699 chr8:145065682 synonymous SNV . 0 4 hm5C_associated_SNPs_8037 0 0 1 0 1 GRINA chr8:145065770 5'GT 145065770 Upstream 89bp
chr8 145066886 145066886 1 + A G rs13277282 145066887 + 145066867 145066907 41 CAGTGGACACCCAGCTGCTACTGGGGAACAAGCAGCTGTCC CAGTGGACACCCAGCTGCTGCTGGGGAACAAGCAGCTGTCC < 41bp 1 0.756684399887606 1 0.79159688949585 experiment 0.486631200224787 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145066887 chr8:145066886 synonymous SNV . 0 20 hm5C_associated_SNPs_8038 0 0 1 0 1 GRINA chr8:145066860 3'AG 145066860 Downstream 27bp
chr8 145150832 145150832 1 + A G rs7820984 145150830 + 145150810 145150850 41 GGCAGGGGGTGCGGGGCTGGCCATGGCTCTGCATTCGGCTG GGCAGGGGGTGCGGGGCTGGCCGTGGCTCTGCATTCGGCTG < 41bp 1 0.679085643476658 1 0.453360199928284 experiment 0.641828713046684 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145150830 chr8:145150832 nonsynonymous SNV 0.084 0 23 hm5C_associated_SNPs_8041 0 0 1 0 1 CYC1 chr8:145150736 3'AG 145150736 Downstream 97bp
chr8 145150833 145150833 1 + T C rs144257411 145150830 + 145150810 145150850 41 GGCAGGGGGTGCGGGGCTGGCCATGGCTCTGCATTCGGCTG GGCAGGGGGTGCGGGGCTGGCCACGGCTCTGCATTCGGCTG < 41bp 1 0.708686338659139 1 0.467003226280212 experiment 0.582627322681723 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145150830 chr8:145150833 nonsynonymous SNV 0.430 0 24 hm5C_associated_SNPs_8042 1 0 1 0 2 CYC1 chr8:145150736 3'AG 145150736 Downstream 98bp
chr8 145150833 145150833 1 + T C rs144257411 145150830 + 145150810 145150850 41 GGCAGGGGGTGCGGGGCTGGCCATGGCTCTGCATTCGGCTG GGCAGGGGGTGCGGGGCTGGCCACGGCTCTGCATTCGGCTG < 41bp 1 0.708686338659139 1 0.467003226280212 experiment 0.582627322681723 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145150830 chr8:145150833 nonsynonymous SNV 0.430 0 24 hm5C_associated_SNPs_8042 1 0 1 0 2 CYC1 chr8:145150932 5'GT 145150932 Upstream 100bp
chr8 145166868 145166868 1 + G A rs551878508 145166884 + 145166864 145166904 41 GTGTGCTGTACCCCAAGCTGCCCACTGTCTTGCCCGGGCTG GTGTACTGTACCCCAAGCTGCCCACTGTCTTGCCCGGGCTG < 41bp 1 0.0354022752484356 1 0.125394582748413 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166884 chr8:145166868 nonsynonymous SNV 0.000 0 5 hm5C_associated_SNPs_8047 0 0 0 0 1 WDR97 chr8:145166790 3'AG 145166790 Downstream 79bp
chr8 145166868 145166868 1 + G A rs551878508 145166885 + 145166865 145166905 41 TGTGCTGTACCCCAAGCTGCCCACTGTCTTGCCCGGGCTGA TGTACTGTACCCCAAGCTGCCCACTGTCTTGCCCGGGCTGA < 41bp 1 0.0891287478515127 1 0.324834525585175 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166885 chr8:145166868 nonsynonymous SNV 0.000 0 4 hm5C_associated_SNPs_8048 0 0 0 0 1 WDR97 chr8:145166790 3'AG 145166790 Downstream 79bp
chr8 145166868 145166868 1 + G A rs551878508 145166886 + 145166866 145166906 41 GTGCTGTACCCCAAGCTGCCCACTGTCTTGCCCGGGCTGAG GTACTGTACCCCAAGCTGCCCACTGTCTTGCCCGGGCTGAG < 41bp 1 0.134381802982868 1 0.331766545772552 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166886 chr8:145166868 nonsynonymous SNV 0.000 0 3 hm5C_associated_SNPs_8049 0 0 0 0 1 WDR97 chr8:145166790 3'AG 145166790 Downstream 79bp
chr8 145167136 145167136 1 + C T rs556046484 145167151 + 145167131 145167171 41 TGGCCCGCTCCTCACTGAGCCACTACCTGGGCATCAGTCTG TGGCCTGCTCCTCACTGAGCCACTACCTGGGCATCAGTCTG < 41bp 1 0.151440191138065 1 0.142856597900391 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145167151 chr8:145167136 nonsynonymous SNV 0.001 1 6 hm5C_associated_SNPs_8050 0 0 0 0 1 WDR97 chr8:145167127 3'AG 145167127 Downstream 10bp
chr8 145167137 145167137 1 + G A rs181448990 145167151 + 145167131 145167171 41 TGGCCCGCTCCTCACTGAGCCACTACCTGGGCATCAGTCTG TGGCCCACTCCTCACTGAGCCACTACCTGGGCATCAGTCTG < 41bp 1 0.16266418178939 1 0.133550763130188 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145167151 chr8:145167137 nonsynonymous SNV 0.001 1 7 hm5C_associated_SNPs_8051 0 0 0 0 1 WDR97 chr8:145167127 3'AG 145167127 Downstream 11bp
chr8 145167157 145167157 1 + C A rs141421747 145167151 + 145167131 145167171 41 TGGCCCGCTCCTCACTGAGCCACTACCTGGGCATCAGTCTG TGGCCCGCTCCTCACTGAGCCACTACATGGGCATCAGTCTG < 41bp 1 0.167876747661956 1 0.281804502010345 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145167151 chr8:145167157 nonsynonymous SNV 0.004 1 27 hm5C_associated_SNPs_8052 0 0 0 0 1 WDR97 chr8:145167127 3'AG 145167127 Downstream 31bp
chr8 145167157 145167157 1 + C A rs141421747 145167175 + 145167155 145167195 41 ACCTGGGCATCAGTCTGGATCTGCAGCTGCAGTTGGAGCAG ACATGGGCATCAGTCTGGATCTGCAGCTGCAGTTGGAGCAG < 41bp 1 0.771099774351896 1 0.678086996078491 experiment 0.457800451296208 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145167175 chr8:145167157 nonsynonymous SNV 0.004 1 3 hm5C_associated_SNPs_8053 0 0 0 0 1 WDR97 chr8:145167127 3'AG 145167127 Downstream 31bp
chr8 145168355 145168355 1 + C G rs148226166 145168356 + 145168336 145168376 41 CCTCCAGCACTGCCTGAGGCCCATCTGCTTCCCCGGCTATG CCTCCAGCACTGCCTGAGGGCCATCTGCTTCCCCGGCTATG < 41bp 1 0.0185435934961419 1 0.027763307094574 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145168356 chr8:145168355 nonsynonymous SNV 0.001 1 20 hm5C_associated_SNPs_8054 0 0 0 0 2 WDR97 chr8:145168343 3'AG 145168343 Downstream 13bp
chr8 145168355 145168355 1 + C G rs148226166 145168356 + 145168336 145168376 41 CCTCCAGCACTGCCTGAGGCCCATCTGCTTCCCCGGCTATG CCTCCAGCACTGCCTGAGGGCCATCTGCTTCCCCGGCTATG < 41bp 1 0.0185435934961419 1 0.027763307094574 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145168356 chr8:145168355 nonsynonymous SNV 0.001 1 20 hm5C_associated_SNPs_8054 0 0 0 0 2 WDR97 chr8:145168420 5'GT 145168420 Upstream 66bp
chr8 145169195 145169195 1 + G A rs115664571 145169204 + 145169184 145169224 41 TACCCGGAGGCGGGCACGATCGAGGGCCTGGCCTCGCTGTT TACCCGGAGGCAGGCACGATCGAGGGCCTGGCCTCGCTGTT < 41bp 1 0.770560838595023 1 0.979033946990967 experiment 0.458878322809954 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145169204 chr8:145169195 synonymous SNV . 0 12 hm5C_associated_SNPs_8055 0 0 1 0 1 WDR97 chr8:145169181 3'AG 145169181 Downstream 15bp
chr8 145169204 145169204 1 + C T rs528202886 145169220 + 145169200 145169240 41 CGATCGAGGGCCTGGCCTCGCTGTTGGTGGCCCTGCTGGAG CGATTGAGGGCCTGGCCTCGCTGTTGGTGGCCCTGCTGGAG < 41bp 1 0.349309983946535 1 0.413247495889664 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145169220 chr8:145169204 synonymous SNV . 0 5 hm5C_associated_SNPs_8056 0 0 1 0 1 WDR97 chr8:145169181 3'AG 145169181 Downstream 24bp
chr8 145582248 145582248 1 + G A rs144713518 145582262 + 145582242 145582282 41 TGCCGGGGGCGGGCCCGGAACCGCCACGGGTGAGTCGGGTC TGCCGGAGGCGGGCCCGGAACCGCCACGGGTGAGTCGGGTC < 41bp 1 0.304776924504479 1 0.523211538791656 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC52A2 ENSG00000185803 UTR5 Human protein_coding chr8:145582262 chr8:145582248 . . 0 7 hm5C_associated_SNPs_8057 0 0 0 0 2 SLC52A2 chr8:145582270 5'GT 145582270 Upstream 23bp
chr8 145582248 145582248 1 + G A rs144713518 145582262 + 145582242 145582282 41 TGCCGGGGGCGGGCCCGGAACCGCCACGGGTGAGTCGGGTC TGCCGGAGGCGGGCCCGGAACCGCCACGGGTGAGTCGGGTC < 41bp 1 0.304776924504479 1 0.523211538791656 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC52A2 ENSG00000185803 UTR5 Human protein_coding chr8:145582262 chr8:145582248 . . 0 7 hm5C_associated_SNPs_8057 0 0 0 0 2 SLC52A2 chr8:145582318 5'GT 145582318 Upstream 71bp
chr8 145582282 145582282 1 + C T rs187464121 145582262 + 145582242 145582282 41 TGCCGGGGGCGGGCCCGGAACCGCCACGGGTGAGTCGGGTC TGCCGGGGGCGGGCCCGGAACCGCCACGGGTGAGTCGGGTT < 41bp 1 0.246984108633858 1 0.45672932267189 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC52A2 ENSG00000185803 UTR5 Human protein_coding chr8:145582262 chr8:145582282 . . 0 41 hm5C_associated_SNPs_8058 0 0 1 0 1 SLC52A2 chr8:145582318 5'GT 145582318 Upstream 37bp
chr8 145691802 145691802 1 + C T rs201514776 145691788 + 145691768 145691808 41 GCGCGAAGCGGGGCCCTCTGCCGCCCCGCGCTCCCATGTAC GCGCGAAGCGGGGCCCTCTGCCGCCCCGCGCTCCTATGTAC < 41bp 1 0.482662070833662 1 0.184433162212372 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KIFC2 ENSG00000167702 UTR5 Human protein_coding chr8:145691788 chr8:145691802 . . 0 35 hm5C_associated_SNPs_8061 0 0 1 0 1 KIFC2 chr8:145691901 5'GT 145691901 Upstream 100bp
chr8 145691802 145691802 1 + C T rs201514776 145691789 + 145691769 145691809 41 CGCGAAGCGGGGCCCTCTGCCGCCCCGCGCTCCCATGTACG CGCGAAGCGGGGCCCTCTGCCGCCCCGCGCTCCTATGTACG < 41bp 1 0.339267232796768 1 0.425486594438553 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KIFC2 ENSG00000167702 UTR5 Human protein_coding chr8:145691789 chr8:145691802 . . 0 34 hm5C_associated_SNPs_8062 0 0 1 0 1 KIFC2 chr8:145691901 5'GT 145691901 Upstream 100bp
chr8 145691802 145691802 1 + C T rs201514776 145691791 + 145691771 145691811 41 CGAAGCGGGGCCCTCTGCCGCCCCGCGCTCCCATGTACGCC CGAAGCGGGGCCCTCTGCCGCCCCGCGCTCCTATGTACGCC < 41bp 1 0.398465215797559 1 0.393499463796616 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KIFC2 ENSG00000167702 UTR5 Human protein_coding chr8:145691791 chr8:145691802 . . 0 32 hm5C_associated_SNPs_8063 0 0 1 0 1 KIFC2 chr8:145691901 5'GT 145691901 Upstream 100bp
chr8 145691802 145691802 1 + C T rs201514776 145691792 + 145691772 145691812 41 GAAGCGGGGCCCTCTGCCGCCCCGCGCTCCCATGTACGCCT GAAGCGGGGCCCTCTGCCGCCCCGCGCTCCTATGTACGCCT < 41bp 1 0.330710955386882 1 0.563832461833954 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KIFC2 ENSG00000167702 UTR5 Human protein_coding chr8:145691792 chr8:145691802 . . 0 31 hm5C_associated_SNPs_8064 0 0 1 0 1 KIFC2 chr8:145691901 5'GT 145691901 Upstream 100bp
chr8 145691802 145691802 1 + C T rs201514776 145691793 + 145691773 145691813 41 AAGCGGGGCCCTCTGCCGCCCCGCGCTCCCATGTACGCCTT AAGCGGGGCCCTCTGCCGCCCCGCGCTCCTATGTACGCCTT < 41bp 1 0.508222874117319 1 0.253276288509369 experiment 0.983554251765362 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KIFC2 ENSG00000167702 UTR5 Human protein_coding chr8:145691793 chr8:145691802 . . 0 30 hm5C_associated_SNPs_8065 0 0 1 0 1 KIFC2 chr8:145691901 5'GT 145691901 Upstream 100bp
chr8 145691802 145691802 1 + C T rs201514776 145691794 + 145691774 145691814 41 AGCGGGGCCCTCTGCCGCCCCGCGCTCCCATGTACGCCTTT AGCGGGGCCCTCTGCCGCCCCGCGCTCCTATGTACGCCTTT < 41bp 1 0.4790971551485 1 0.420938014984131 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KIFC2 ENSG00000167702 UTR5 Human protein_coding chr8:145691794 chr8:145691802 . . 0 29 hm5C_associated_SNPs_8066 0 0 1 0 1 KIFC2 chr8:145691901 5'GT 145691901 Upstream 100bp
chr8 145697768 145697768 1 + C A rs61739558 145697780 + 145697760 145697800 41 GGGCCTCCCGAGCGCCTGGCCGTGAGGCAGGGCCCAGAAGG GGGCCTCCAGAGCGCCTGGCCGTGAGGCAGGGCCCAGAAGG < 41bp 1 0.7133543598475 1 0.60174298286438 experiment 0.573291280305 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145697780 chr8:145697768 synonymous SNV . 0 9 hm5C_associated_SNPs_8067 0 0 1 0 2 KIFC2 chr8:145697744 3'AG 145697744 Downstream 25bp
chr8 145697768 145697768 1 + C A rs61739558 145697780 + 145697760 145697800 41 GGGCCTCCCGAGCGCCTGGCCGTGAGGCAGGGCCCAGAAGG GGGCCTCCAGAGCGCCTGGCCGTGAGGCAGGGCCCAGAAGG < 41bp 1 0.7133543598475 1 0.60174298286438 experiment 0.573291280305 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145697780 chr8:145697768 synonymous SNV . 0 9 hm5C_associated_SNPs_8067 0 0 1 0 2 KIFC2 chr8:145697867 5'GT 145697867 Upstream 100bp
chr8 145735872 145735872 1 + C A rs180675502 145735855 + 145735835 145735875 41 GTGGTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTT GTGGTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGAACTT < 41bp 1 0.227428447126992 1 0.063158243894577 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735855 chr8:145735872 nonsynonymous SNV 0.024 0 38 hm5C_associated_SNPs_8071 0 0 1 0 1 MFSD3 chr8:145735890 5'GT 145735890 Upstream 19bp
chr8 145735872 145735872 1 + C A rs180675502 145735858 + 145735838 145735878 41 GTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTTGCT GTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGAACTTGCT < 41bp 1 0.158619093388642 1 0.208446890115738 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735858 chr8:145735872 nonsynonymous SNV 0.024 0 35 hm5C_associated_SNPs_8072 0 0 1 0 1 MFSD3 chr8:145735890 5'GT 145735890 Upstream 19bp
chr8 145736254 145736254 1 + C T rs73377627 145736271 + 145736251 145736291 41 ATGCGCTGCAGCCAGCTGGCCCCCAGGGCCCTGCAGGTGAG ATGTGCTGCAGCCAGCTGGCCCCCAGGGCCCTGCAGGTGAG < 41bp 1 0.392055782712186 1 0.195359110832214 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145736271 chr8:145736254 nonsynonymous SNV 0.993 1 4 hm5C_associated_SNPs_8073 0 0 1 0 1 MFSD3 chr8:145736286 5'GT 145736286 Upstream 33bp
chr8 145736460 145736460 1 + G C rs570033509 145736472 + 145736452 145736492 41 GATGGGTTGGGGCCACATCCCTGCTTCTTGCTCCTGCTCAT GATGGGTTCGGGCCACATCCCTGCTTCTTGCTCCTGCTCAT < 41bp 1 0.628717228340515 1 0.10076117515564 experiment 0.74256554331897 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145736472 chr8:145736460 nonsynonymous SNV 0.001 1 9 hm5C_associated_SNPs_8074 0 0 1 0 1 MFSD3 chr8:145736374 3'AG 145736374 Downstream 87bp
chr8 146034683 146034683 1 + C T rs114857098 146034698 + 146034678 146034718 41 CGTTTCTCCCACCTTAGCCTCCTGAGTAGCTGGGACTAAGG CGTTTTTCCCACCTTAGCCTCCTGAGTAGCTGGGACTAAGG < 41bp 1 0.0862362980763576 1 0.135398805141449 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LOC100130027 ENSG00000197363 UTR3 Human protein_coding chr8:146034698 chr8:146034683 . . 0 6 hm5C_associated_SNPs_8079 0 0 0 0 1 LOC100130027 chr8:146034603 3'AG 146034603 Downstream 81bp
chr8 146277852 146277852 1 + C G rs201179746 146277849 + 146277829 146277869 41 TCGGCGTCGGACTCTGCGCCCCGCGTAGTTCCGGTGGCGAC TCGGCGTCGGACTCTGCGCCCCGGGTAGTTCCGGTGGCGAC < 41bp 1 0.759008188554449 1 0.775508642196655 experiment 0.481983622891103 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control C8orf33 ENSG00000182307 UTR5 Human protein_coding chr8:146277849 chr8:146277852 . . 0 24 hm5C_associated_SNPs_8080 0 0 1 0 1 C8orf33 chr8:146277883 5'GT 146277883 Upstream 32bp
chr8 146277852 146277852 1 + C G rs201179746 146277850 + 146277830 146277870 41 CGGCGTCGGACTCTGCGCCCCGCGTAGTTCCGGTGGCGACT CGGCGTCGGACTCTGCGCCCCGGGTAGTTCCGGTGGCGACT < 41bp 1 0.660143759451333 1 0.764660596847534 experiment 0.679712481097333 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control C8orf33 ENSG00000182307 UTR5 Human protein_coding chr8:146277850 chr8:146277852 . . 0 23 hm5C_associated_SNPs_8081 0 0 1 0 1 C8orf33 chr8:146277883 5'GT 146277883 Upstream 32bp
chr9 17786428 17786428 1 + C A rs139376322 17786409 + 17786389 17786429 41 TAAGCTCAGCATGATCAACACCATGTCAAAAATCCGTGGCC TAAGCTCAGCATGATCAACACCATGTCAAAAATCCGTGGAC < 41bp 1 0.18927881559002 1 0.113582968711853 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SH3GL2 ENSG00000107295 CDS Human protein_coding chr9:17786409 chr9:17786428 synonymous SNV . 0 40 hm5C_associated_SNPs_8105 0 0 0 0 2 SH3GL2 chr9:17786379 3'AG 17786379 Downstream 50bp
chr9 17786428 17786428 1 + C A rs139376322 17786409 + 17786389 17786429 41 TAAGCTCAGCATGATCAACACCATGTCAAAAATCCGTGGCC TAAGCTCAGCATGATCAACACCATGTCAAAAATCCGTGGAC < 41bp 1 0.18927881559002 1 0.113582968711853 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SH3GL2 ENSG00000107295 CDS Human protein_coding chr9:17786409 chr9:17786428 synonymous SNV . 0 40 hm5C_associated_SNPs_8105 0 0 0 0 2 SH3GL2 chr9:17786522 5'GT 17786522 Upstream 95bp
chr9 18504866 18504866 1 + C G rs144094882 18504862 + 18504842 18504882 41 CGCTCCGAGGAGGACCGGGACGGCCTATGGGATGCCTGGGG CGCTCCGAGGAGGACCGGGACGGCGTATGGGATGCCTGGGG < 41bp 1 0.634329666728827 1 0.552129983901978 experiment 0.731340666542345 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18504862 chr9:18504866 nonsynonymous SNV 0.974 1 25 hm5C_associated_SNPs_8106 0 0 0 0 1 ADAMTSL1 chr9:18504954 5'GT 18504954 Upstream 89bp
chr9 18504868 18504868 1 + A C rs61742718 18504862 + 18504842 18504882 41 CGCTCCGAGGAGGACCGGGACGGCCTATGGGATGCCTGGGG CGCTCCGAGGAGGACCGGGACGGCCTCTGGGATGCCTGGGG < 41bp 1 0.302956130121601 1 0.300521016120911 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18504862 chr9:18504868 synonymous SNV . 0 27 hm5C_associated_SNPs_8107 0 0 0 0 1 ADAMTSL1 chr9:18504954 5'GT 18504954 Upstream 87bp
chr9 18887959 18887959 1 + C T rs149522121 18887949 + 18887929 18887969 41 TGGACAGATCCTTCAAGTTGCAAACCTTAGCGGTGGGTCTC TGGACAGATCCTTCAAGTTGCAAACCTTAGTGGTGGGTCTC < 41bp 1 0.0584163164091355 1 0.0970111489295959 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18887949 chr9:18887959 synonymous SNV . 0 31 hm5C_associated_SNPs_8108 0 0 0 0 1 ADAMTSL1 chr9:18888041 5'GT 18888041 Upstream 83bp
chr9 19336781 19336781 1 + C T rs570387726 19336770 + 19336750 19336790 41 ATGATGCTAACAATGGGGAGCACACAGTCTTCGTCAGAGAT ATGATGCTAACAATGGGGAGCACACAGTCTTTGTCAGAGAT < 41bp 1 0.0535975970838051 1 0.276986479759216 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DENND4C ENSG00000137145 CDS Human protein_coding chr9:19336770 chr9:19336781 synonymous SNV . 0 32 hm5C_associated_SNPs_8109 0 0 1 0 1 DENND4C chr9:19336830 5'GT 19336830 Upstream 50bp
chr9 20658425 20658425 1 + T C rs147788988 20658422 + 20658402 20658442 41 CAGACTGCTGTGCTAGCAATCAGTGAGACTCCGTGGGCGTA CAGACTGCTGTGCTAGCAATCAGCGAGACTCCGTGGGCGTA < 41bp 1 0.597873135604887 1 0.942455649375916 experiment 0.804253728790227 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FOCAD ENSG00000188352 UTR5 Human protein_coding chr9:20658422 chr9:20658425 . . 0 24 hm5C_associated_SNPs_8110 0 0 0 0 1 FOCAD chr9:20658458 5'GT 20658458 Upstream 34bp
chr9 20923668 20923668 1 + G A rs59400819 20923667 + 20923647 20923687 41 CCTTTTGAACAGGGAGAGTCCGGTAGTGAAAGGCAATGCGC CCTTTTGAACAGGGAGAGTCCAGTAGTGAAAGGCAATGCGC < 41bp 1 0.511982323575332 1 0.278410762548447 experiment 0.976035352849337 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20923667 chr9:20923668 synonymous SNV . 0 22 hm5C_associated_SNPs_8115 0 0 0 0 2 FOCAD chr9:20923659 3'AG 20923659 Downstream 10bp
chr9 20923668 20923668 1 + G A rs59400819 20923667 + 20923647 20923687 41 CCTTTTGAACAGGGAGAGTCCGGTAGTGAAAGGCAATGCGC CCTTTTGAACAGGGAGAGTCCAGTAGTGAAAGGCAATGCGC < 41bp 1 0.511982323575332 1 0.278410762548447 experiment 0.976035352849337 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20923667 chr9:20923668 synonymous SNV . 0 22 hm5C_associated_SNPs_8115 0 0 0 0 2 FOCAD chr9:20923767 5'GT 20923767 Upstream 100bp
chr9 21859379 21859379 1 + T G rs62556500 21859391 + 21859371 21859411 41 ACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCT ACCATACCGCAGATAGGGTCCACAGAATGGTCAGAAACCCT < 41bp 1 0.311530670450125 1 0.251135289669037 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTAP ENSG00000099810 CDS Human protein_coding chr9:21859391 chr9:21859379 synonymous SNV . 0 9 hm5C_associated_SNPs_8119 1 0 1 1 3 MTAP chr9:21859285 3'AG 21859285 Downstream 95bp
chr9 21859379 21859379 1 + T G rs62556500 21859391 + 21859371 21859411 41 ACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCT ACCATACCGCAGATAGGGTCCACAGAATGGTCAGAAACCCT < 41bp 1 0.311530670450125 1 0.251135289669037 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTAP ENSG00000099810 CDS Human protein_coding chr9:21859391 chr9:21859379 synonymous SNV . 0 9 hm5C_associated_SNPs_8119 1 0 1 1 3 MTAP chr9:21859302 3'AG 21859302 Downstream 78bp
chr9 21859379 21859379 1 + T G rs62556500 21859391 + 21859371 21859411 41 ACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCT ACCATACCGCAGATAGGGTCCACAGAATGGTCAGAAACCCT < 41bp 1 0.311530670450125 1 0.251135289669037 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTAP ENSG00000099810 CDS Human protein_coding chr9:21859391 chr9:21859379 synonymous SNV . 0 9 hm5C_associated_SNPs_8119 1 0 1 1 3 MTAP chr9:21859424 5'GT 21859424 Upstream 46bp
chr9 22056295 22056295 1 + T A rs7853090 22056276 + 22056256 22056296 41 ACGGGGTTTCACCATGTTGGCCAGACTGGTCTTGAACTCTC ACGGGGTTTCACCATGTTGGCCAGACTGGTCTTGAACTCAC < 41bp 1 0.446964537078805 1 0.222072541713715 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDKN2B-AS1 ENSG00000240498 ncRNA_exonic Human antisense chr9:22056276 chr9:22056295 . . 0 40 hm5C_associated_SNPs_8120 0 0 0 0 2 CDKN2B-AS1 chr9:22056251 3'AG 22056251 Downstream 45bp
chr9 22056295 22056295 1 + T A rs7853090 22056276 + 22056256 22056296 41 ACGGGGTTTCACCATGTTGGCCAGACTGGTCTTGAACTCTC ACGGGGTTTCACCATGTTGGCCAGACTGGTCTTGAACTCAC < 41bp 1 0.446964537078805 1 0.222072541713715 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDKN2B-AS1 ENSG00000240498 ncRNA_exonic Human antisense chr9:22056276 chr9:22056295 . . 0 40 hm5C_associated_SNPs_8120 0 0 0 0 2 CDKN2B-AS1 chr9:22056386 5'GT 22056386 Upstream 92bp
chr9 22056295 22056295 1 + T A rs7853090 22056277 + 22056257 22056297 41 CGGGGTTTCACCATGTTGGCCAGACTGGTCTTGAACTCTCG CGGGGTTTCACCATGTTGGCCAGACTGGTCTTGAACTCACG < 41bp 1 0.134392098280188 1 0.0746463537216187 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDKN2B-AS1 ENSG00000240498 ncRNA_exonic Human antisense chr9:22056277 chr9:22056295 . . 0 39 hm5C_associated_SNPs_8121 0 0 0 0 2 CDKN2B-AS1 chr9:22056251 3'AG 22056251 Downstream 45bp
chr9 22056295 22056295 1 + T A rs7853090 22056277 + 22056257 22056297 41 CGGGGTTTCACCATGTTGGCCAGACTGGTCTTGAACTCTCG CGGGGTTTCACCATGTTGGCCAGACTGGTCTTGAACTCACG < 41bp 1 0.134392098280188 1 0.0746463537216187 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDKN2B-AS1 ENSG00000240498 ncRNA_exonic Human antisense chr9:22056277 chr9:22056295 . . 0 39 hm5C_associated_SNPs_8121 0 0 0 0 2 CDKN2B-AS1 chr9:22056386 5'GT 22056386 Upstream 92bp
chr9 33025324 33025324 1 + C G rs77871808 33025343 + 33025323 33025363 41 GCTGCGCACAGCTCGGCGCTCCTTCCCGCTCCCTCACACAC GGTGCGCACAGCTCGGCGCTCCTTCCCGCTCCCTCACACAC < 41bp 1 0.166408876652063 1 0.0929149389266968 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DNAJA1 ENSG00000086061 UTR5 Human protein_coding chr9:33025343 chr9:33025324 . . 0 2 hm5C_associated_SNPs_8122 0 0 1 0 1 DNAJA1 chr9:33025381 5'GT 33025381 Upstream 58bp
chr9 33290532 33290532 1 + A C rs830576 33290533 + 33290513 33290553 41 TGACCTGGTGACAGTGCTGACTTGGCTGTACAGCTCGATCT TGACCTGGTGACAGTGCTGCCTTGGCTGTACAGCTCGATCT < 41bp 1 0.69873630431236 1 0.0544207990169525 experiment 0.60252739137528 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NFX1 ENSG00000086102 UTR5 Human protein_coding chr9:33290533 chr9:33290532 . . 0 20 hm5C_associated_SNPs_8123 0 0 0 0 1 NFX1 chr9:33290595 5'GT 33290595 Upstream 64bp
chr9 33290532 33290532 1 + A C rs830576 33290543 + 33290523 33290563 41 ACAGTGCTGACTTGGCTGTACAGCTCGATCTAGGTTCTGCG ACAGTGCTGCCTTGGCTGTACAGCTCGATCTAGGTTCTGCG < 41bp 1 0.535134533467313 1 0.0422392785549164 experiment 0.929730933065375 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFX1 ENSG00000086102 UTR5 Human protein_coding chr9:33290543 chr9:33290532 . . 0 10 hm5C_associated_SNPs_8124 0 0 0 0 1 NFX1 chr9:33290595 5'GT 33290595 Upstream 64bp
chr9 33313652 33313652 1 + G A rs557655235 33313662 + 33313642 33313682 41 GTCTTTACAGGCACACAGTTCGCTGTGGTCAGGCTGTCTCA GTCTTTACAGACACACAGTTCGCTGTGGTCAGGCTGTCTCA < 41bp 1 0.393441254916752 1 0.568991184234619 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33313662 chr9:33313652 synonymous SNV . 0 11 hm5C_associated_SNPs_8125 0 0 1 0 1 NFX1 chr9:33313652 3'AG 33313652 Downstream 1bp
chr9 33366682 33366682 1 + G A rs146508853 33366677 + 33366657 33366697 41 CCTCCCATGAACAGAGACCACCGCCGGATCATCCATGACTT CCTCCCATGAACAGAGACCACCGCCAGATCATCCATGACTT < 41bp 1 0.202513553413176 1 0.118157088756561 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33366677 chr9:33366682 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_8127 0 0 1 0 2 NFX1 chr9:33366627 3'AG 33366627 Downstream 56bp
chr9 33366682 33366682 1 + G A rs146508853 33366677 + 33366657 33366697 41 CCTCCCATGAACAGAGACCACCGCCGGATCATCCATGACTT CCTCCCATGAACAGAGACCACCGCCAGATCATCCATGACTT < 41bp 1 0.202513553413176 1 0.118157088756561 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33366677 chr9:33366682 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_8127 0 0 1 0 2 NFX1 chr9:33366772 5'GT 33366772 Upstream 91bp
chr9 33367595 33367595 1 + C T rs566535660 33367611 + 33367591 33367631 41 TCCTCATCACAGACATCAGTCAGACAAGTAAGATTCTCCAG TCCTTATCACAGACATCAGTCAGACAAGTAAGATTCTCCAG < 41bp 1 0.413099403819916 1 0.479667723178864 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33367611 chr9:33367595 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_8128 0 0 0 0 2 NFX1 chr9:33367513 3'AG 33367513 Downstream 83bp
chr9 33367595 33367595 1 + C T rs566535660 33367611 + 33367591 33367631 41 TCCTCATCACAGACATCAGTCAGACAAGTAAGATTCTCCAG TCCTTATCACAGACATCAGTCAGACAAGTAAGATTCTCCAG < 41bp 1 0.413099403819916 1 0.479667723178864 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33367611 chr9:33367595 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_8128 0 0 0 0 2 NFX1 chr9:33367617 5'GT 33367617 Upstream 23bp
chr9 34196373 34196373 1 + G A rs180983078 34196392 + 34196372 34196412 41 GGCGTGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTC GACGTGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTC < 41bp 1 0.236517013835915 1 0.451317071914673 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBAP1 ENSG00000165006 UTR5 Human protein_coding chr9:34196392 chr9:34196373 . . 0 2 hm5C_associated_SNPs_8131 0 0 0 0 2 UBAP1 chr9:34196334 3'AG 34196334 Downstream 40bp
chr9 34196373 34196373 1 + G A rs180983078 34196392 + 34196372 34196412 41 GGCGTGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTC GACGTGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTC < 41bp 1 0.236517013835915 1 0.451317071914673 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBAP1 ENSG00000165006 UTR5 Human protein_coding chr9:34196392 chr9:34196373 . . 0 2 hm5C_associated_SNPs_8131 0 0 0 0 2 UBAP1 chr9:34196456 5'GT 34196456 Upstream 84bp
chr9 34196399 34196399 1 + T A rs139546201 34196392 + 34196372 34196412 41 GGCGTGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTC GGCGTGATCTCGGCTCACTGCAACCTCAGCCTCCTGGGTTC < 41bp 1 0.293680164564756 1 0.572274327278137 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBAP1 ENSG00000165006 UTR5 Human protein_coding chr9:34196392 chr9:34196399 . . 0 28 hm5C_associated_SNPs_8132 0 0 0 0 2 UBAP1 chr9:34196334 3'AG 34196334 Downstream 66bp
chr9 34196399 34196399 1 + T A rs139546201 34196392 + 34196372 34196412 41 GGCGTGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTC GGCGTGATCTCGGCTCACTGCAACCTCAGCCTCCTGGGTTC < 41bp 1 0.293680164564756 1 0.572274327278137 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBAP1 ENSG00000165006 UTR5 Human protein_coding chr9:34196392 chr9:34196399 . . 0 28 hm5C_associated_SNPs_8132 0 0 0 0 2 UBAP1 chr9:34196456 5'GT 34196456 Upstream 58bp
chr9 34338718 34338718 1 + G A rs141762241 34338713 + 34338693 34338733 41 ACATCTCTCTTGTTTCAGTGCGTTTGCTTCTGAGGATCTCC ACATCTCTCTTGTTTCAGTGCGTTTACTTCTGAGGATCTCC < 41bp 1 0.0541532795915031 1 0.0850545465946198 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NUDT2 ENSG00000164978 UTR5 Human protein_coding chr9:34338713 chr9:34338718 . . 0 26 hm5C_associated_SNPs_8133 0 0 1 0 1 NUDT2 chr9:34338711 3'AG 34338711 Downstream 8bp
chr9 35660955 35660955 1 + C A rs151243859 35660941 + 35660921 35660961 41 ATCTCTCCCCACACAGAGGCCAGCAGACCTCTTCCTGAGGA ATCTCTCCCCACACAGAGGCCAGCAGACCTCTTCATGAGGA < 41bp 1 0.668992320289693 1 0.195465922355652 experiment 0.662015359420613 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC107 ENSG00000159884 CDS Human protein_coding chr9:35660941 chr9:35660955 nonsynonymous SNV 0.386 1 35 hm5C_associated_SNPs_8135 0 0 0 0 1 CCDC107 chr9:35660937 3'AG 35660937 Downstream 19bp
chr9 35733402 35733402 1 + A G rs11538707 35733405 + 35733385 35733425 41 TACCCTAGGAGATTGCTAGGCTAGTACTGACAGATGAGGAG TACCCTAGGAGATTGCTGGGCTAGTACTGACAGATGAGGAG < 41bp 1 0.247119127685576 1 0.168048739433289 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733405 chr9:35733402 nonsynonymous SNV 0.452 1 18 hm5C_associated_SNPs_8136 0 0 1 0 2 CREB3 chr9:35733393 3'AG 35733393 Downstream 10bp
chr9 35733402 35733402 1 + A G rs11538707 35733405 + 35733385 35733425 41 TACCCTAGGAGATTGCTAGGCTAGTACTGACAGATGAGGAG TACCCTAGGAGATTGCTGGGCTAGTACTGACAGATGAGGAG < 41bp 1 0.247119127685576 1 0.168048739433289 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733405 chr9:35733402 nonsynonymous SNV 0.452 1 18 hm5C_associated_SNPs_8136 0 0 1 0 2 CREB3 chr9:35733482 5'GT 35733482 Upstream 81bp
chr9 35733402 35733402 1 + A G rs11538707 35733411 + 35733391 35733431 41 AGGAGATTGCTAGGCTAGTACTGACAGATGAGGAGAAGAGT AGGAGATTGCTGGGCTAGTACTGACAGATGAGGAGAAGAGT < 41bp 1 0.212607527667576 1 0.388824135065079 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733411 chr9:35733402 nonsynonymous SNV 0.452 1 12 hm5C_associated_SNPs_8137 0 0 1 0 2 CREB3 chr9:35733393 3'AG 35733393 Downstream 10bp
chr9 35733402 35733402 1 + A G rs11538707 35733411 + 35733391 35733431 41 AGGAGATTGCTAGGCTAGTACTGACAGATGAGGAGAAGAGT AGGAGATTGCTGGGCTAGTACTGACAGATGAGGAGAAGAGT < 41bp 1 0.212607527667576 1 0.388824135065079 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733411 chr9:35733402 nonsynonymous SNV 0.452 1 12 hm5C_associated_SNPs_8137 0 0 1 0 2 CREB3 chr9:35733482 5'GT 35733482 Upstream 81bp
chr9 35733402 35733402 1 + A G rs11538707 35733415 + 35733395 35733435 41 GATTGCTAGGCTAGTACTGACAGATGAGGAGAAGAGTCTAT GATTGCTGGGCTAGTACTGACAGATGAGGAGAAGAGTCTAT < 41bp 1 0.402289396457802 1 0.336936712265015 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733415 chr9:35733402 nonsynonymous SNV 0.452 1 8 hm5C_associated_SNPs_8138 0 0 1 0 2 CREB3 chr9:35733393 3'AG 35733393 Downstream 10bp
chr9 35733402 35733402 1 + A G rs11538707 35733415 + 35733395 35733435 41 GATTGCTAGGCTAGTACTGACAGATGAGGAGAAGAGTCTAT GATTGCTGGGCTAGTACTGACAGATGAGGAGAAGAGTCTAT < 41bp 1 0.402289396457802 1 0.336936712265015 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733415 chr9:35733402 nonsynonymous SNV 0.452 1 8 hm5C_associated_SNPs_8138 0 0 1 0 2 CREB3 chr9:35733482 5'GT 35733482 Upstream 81bp
chr9 35733434 35733434 1 + A G rs149239671 35733415 + 35733395 35733435 41 GATTGCTAGGCTAGTACTGACAGATGAGGAGAAGAGTCTAT GATTGCTAGGCTAGTACTGACAGATGAGGAGAAGAGTCTGT < 41bp 1 0.346388535130099 1 0.193978905677795 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733415 chr9:35733434 synonymous SNV . 0 40 hm5C_associated_SNPs_8139 0 0 1 0 2 CREB3 chr9:35733393 3'AG 35733393 Downstream 42bp
chr9 35733434 35733434 1 + A G rs149239671 35733415 + 35733395 35733435 41 GATTGCTAGGCTAGTACTGACAGATGAGGAGAAGAGTCTAT GATTGCTAGGCTAGTACTGACAGATGAGGAGAAGAGTCTGT < 41bp 1 0.346388535130099 1 0.193978905677795 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733415 chr9:35733434 synonymous SNV . 0 40 hm5C_associated_SNPs_8139 0 0 1 0 2 CREB3 chr9:35733482 5'GT 35733482 Upstream 49bp
chr9 35793054 35793054 1 + A T rs191155989 35793057 + 35793037 35793077 41 AGCAGGCCACCCACTTCATCCGGGCCAACGGGCGCAGTGAG AGCAGGCCACCCACTTCTTCCGGGCCAACGGGCGCAGTGAG < 41bp 1 0.573431167428663 1 0.938083648681641 experiment 0.853137665142674 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NPR2 ENSG00000159899 CDS Human protein_coding chr9:35793057 chr9:35793054 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_8140 1 0 0 0 1 NPR2 chr9:35793072 5'GT 35793072 Upstream 19bp
chr9 36162426 36162426 1 + C T rs73648727 36162431 + 36162411 36162451 41 GGCGTCCGCAAGTGACGGGTCCTCCTTTGTGGTGGCCAGAT GGCGTCCGCAAGTGATGGGTCCTCCTTTGTGGTGGCCAGAT < 41bp 1 0.0807302911457951 1 0.0488678216934204 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GLIPR2 ENSG00000122694 CDS Human protein_coding chr9:36162431 chr9:36162426 synonymous SNV . 0 16 hm5C_associated_SNPs_8141 0 0 0 0 1 GLIPR2 chr9:36162359 3'AG 36162359 Downstream 68bp
chr9 36604079 36604079 1 + G A rs369220918 36604077 + 36604057 36604097 41 CCCGAGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAATTG CCCGAGTTCAAGCGATTCTCCTACCTCAGCCTCCCGAATTG < 41bp 1 0.450214251657973 1 0.0788038372993469 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MELK ENSG00000165304 UTR5 Human protein_coding chr9:36604077 chr9:36604079 . . 0 23 hm5C_associated_SNPs_8145 0 0 0 0 2 MELK chr9:36603987 3'AG 36603987 Downstream 93bp
chr9 36604079 36604079 1 + G A rs369220918 36604077 + 36604057 36604097 41 CCCGAGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAATTG CCCGAGTTCAAGCGATTCTCCTACCTCAGCCTCCCGAATTG < 41bp 1 0.450214251657973 1 0.0788038372993469 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MELK ENSG00000165304 UTR5 Human protein_coding chr9:36604077 chr9:36604079 . . 0 23 hm5C_associated_SNPs_8145 0 0 0 0 2 MELK chr9:36604012 3'AG 36604012 Downstream 68bp
chr9 36604079 36604079 1 + G A rs369220918 36604098 + 36604078 36604118 41 TGCCTCAGCCTCCCGAATTGCTGGAATTACAGGCATGTACC TACCTCAGCCTCCCGAATTGCTGGAATTACAGGCATGTACC < 41bp 1 0.741253957294586 1 0.734453558921814 experiment 0.517492085410828 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MELK ENSG00000165304 UTR5 Human protein_coding chr9:36604098 chr9:36604079 . . 0 2 hm5C_associated_SNPs_8146 0 0 0 0 2 MELK chr9:36603987 3'AG 36603987 Downstream 93bp
chr9 36604079 36604079 1 + G A rs369220918 36604098 + 36604078 36604118 41 TGCCTCAGCCTCCCGAATTGCTGGAATTACAGGCATGTACC TACCTCAGCCTCCCGAATTGCTGGAATTACAGGCATGTACC < 41bp 1 0.741253957294586 1 0.734453558921814 experiment 0.517492085410828 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MELK ENSG00000165304 UTR5 Human protein_coding chr9:36604098 chr9:36604079 . . 0 2 hm5C_associated_SNPs_8146 0 0 0 0 2 MELK chr9:36604012 3'AG 36604012 Downstream 68bp
chr9 36604091 36604091 1 + C T rs559707978 36604077 + 36604057 36604097 41 CCCGAGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAATTG CCCGAGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAATTG < 41bp 1 0.522070817181799 1 0.090776801109314 experiment 0.955858365636402 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MELK ENSG00000165304 UTR5 Human protein_coding chr9:36604077 chr9:36604091 . . 0 35 hm5C_associated_SNPs_8147 0 0 0 0 1 MELK chr9:36604012 3'AG 36604012 Downstream 80bp
chr9 36604091 36604091 1 + C T rs559707978 36604098 + 36604078 36604118 41 TGCCTCAGCCTCCCGAATTGCTGGAATTACAGGCATGTACC TGCCTCAGCCTCCTGAATTGCTGGAATTACAGGCATGTACC < 41bp 1 0.752087176094131 1 0.808037400245667 experiment 0.495825647811738 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MELK ENSG00000165304 UTR5 Human protein_coding chr9:36604098 chr9:36604091 . . 0 14 hm5C_associated_SNPs_8148 0 0 0 0 1 MELK chr9:36604012 3'AG 36604012 Downstream 80bp
chr9 37501746 37501746 1 + G C rs148401018 37501742 + 37501722 37501762 41 AATTTCGGATTCTATGAAGGCGAAGATTACTGCATATGTGA AATTTCGGATTCTATGAAGGCGAACATTACTGCATATGTGA < 41bp 1 0.136516438632701 1 0.165109664201736 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1E ENSG00000137054 CDS Human protein_coding chr9:37501742 chr9:37501746 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_8152 0 0 0 0 2 POLR1E chr9:37501710 3'AG 37501710 Downstream 37bp
chr9 37501746 37501746 1 + G C rs148401018 37501742 + 37501722 37501762 41 AATTTCGGATTCTATGAAGGCGAAGATTACTGCATATGTGA AATTTCGGATTCTATGAAGGCGAACATTACTGCATATGTGA < 41bp 1 0.136516438632701 1 0.165109664201736 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1E ENSG00000137054 CDS Human protein_coding chr9:37501742 chr9:37501746 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_8152 0 0 0 0 2 POLR1E chr9:37501841 5'GT 37501841 Upstream 96bp
chr9 37501752 37501752 1 + T C rs17412622 37501742 + 37501722 37501762 41 AATTTCGGATTCTATGAAGGCGAAGATTACTGCATATGTGA AATTTCGGATTCTATGAAGGCGAAGATTACCGCATATGTGA < 41bp 1 0.38970177115989 1 0.356542706489563 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1E ENSG00000137054 CDS Human protein_coding chr9:37501742 chr9:37501752 synonymous SNV . 0 31 hm5C_associated_SNPs_8153 0 0 0 0 2 POLR1E chr9:37501710 3'AG 37501710 Downstream 43bp
chr9 37501752 37501752 1 + T C rs17412622 37501742 + 37501722 37501762 41 AATTTCGGATTCTATGAAGGCGAAGATTACTGCATATGTGA AATTTCGGATTCTATGAAGGCGAAGATTACCGCATATGTGA < 41bp 1 0.38970177115989 1 0.356542706489563 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1E ENSG00000137054 CDS Human protein_coding chr9:37501742 chr9:37501752 synonymous SNV . 0 31 hm5C_associated_SNPs_8153 0 0 0 0 2 POLR1E chr9:37501841 5'GT 37501841 Upstream 90bp
chr9 71650766 71650766 1 + C A rs572324212 71650749 + 71650729 71650769 41 GGCCTCCTGGCGTCACCCAGCCCAGCCCAGGCCCAGACCCT GGCCTCCTGGCGTCACCCAGCCCAGCCCAGGCCCAGAACCT < 41bp 1 0.385506145018307 1 0.0978075861930847 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FXN ENSG00000165060 CDS Human protein_coding chr9:71650749 chr9:71650766 nonsynonymous SNV 0.001 2 38 hm5C_associated_SNPs_8182 0 0 1 0 1 FXN chr9:71650863 5'GT 71650863 Upstream 98bp
chr9 71650766 71650766 1 + C A rs572324212 71650750 + 71650730 71650770 41 GCCTCCTGGCGTCACCCAGCCCAGCCCAGGCCCAGACCCTC GCCTCCTGGCGTCACCCAGCCCAGCCCAGGCCCAGAACCTC < 41bp 1 0.358412315813511 1 0.20536607503891 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FXN ENSG00000165060 CDS Human protein_coding chr9:71650750 chr9:71650766 nonsynonymous SNV 0.001 2 37 hm5C_associated_SNPs_8183 0 0 1 0 1 FXN chr9:71650863 5'GT 71650863 Upstream 98bp
chr9 71650766 71650766 1 + C A rs572324212 71650751 + 71650731 71650771 41 CCTCCTGGCGTCACCCAGCCCAGCCCAGGCCCAGACCCTCA CCTCCTGGCGTCACCCAGCCCAGCCCAGGCCCAGAACCTCA < 41bp 1 0.630475964210394 1 0.0533720552921295 experiment 0.739048071579212 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FXN ENSG00000165060 CDS Human protein_coding chr9:71650751 chr9:71650766 nonsynonymous SNV 0.001 2 36 hm5C_associated_SNPs_8184 0 0 1 0 1 FXN chr9:71650863 5'GT 71650863 Upstream 98bp
chr9 71866035 71866035 1 + G A rs201202451 71866051 + 71866031 71866071 41 TAATGAAACTCCTGGGGCATCTACCAAAGGTTATCCTCCTC TAATAAAACTCCTGGGGCATCTACCAAAGGTTATCCTCCTC < 41bp 1 0.210767837849868 1 0.345415085554123 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TJP2 ENSG00000119139 CDS Human protein_coding chr9:71866051 chr9:71866035 nonsynonymous SNV 0.040 0 5 hm5C_associated_SNPs_8187 0 0 0 0 1 TJP2 chr9:71865951 3'AG 71865951 Downstream 85bp
chr9 72003132 72003132 1 + T C rs539191443 72003140 + 72003120 72003160 41 ACTGGATCTGGCTGCAGTGACTCTGAGGAGAGGCTTGAGAT ACTGGATCTGGCCGCAGTGACTCTGAGGAGAGGCTTGAGAT < 41bp 1 0.572763964918325 1 0.37565866112709 experiment 0.854472070163351 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM189A2 ENSG00000135063 CDS Human protein_coding chr9:72003140 chr9:72003132 synonymous SNV . 0 13 hm5C_associated_SNPs_8188 0 0 0 0 1 FAM189A2 chr9:72003074 3'AG 72003074 Downstream 59bp
chr9 78506232 78506232 1 + G A rs140882057 78506235 + 78506215 78506255 41 GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT GCAGTCAAAATCGCCGGAGGCTTCCCGGAGGCCAACCGTAT < 41bp 1 0.074134100183739 1 0.0532965958118439 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78506235 chr9:78506232 synonymous SNV . 0 18 hm5C_associated_SNPs_8191 0 0 0 0 1 PCSK5 chr9:78506289 5'GT 78506289 Upstream 58bp
chr9 78506249 78506249 1 + A G rs554390740 78506235 + 78506215 78506255 41 GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAGCCGTAT < 41bp 1 0.0593545000381177 1 0.0332492589950562 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78506235 chr9:78506249 nonsynonymous SNV 0.901 0 35 hm5C_associated_SNPs_8192 0 0 0 1 1 PCSK5 chr9:78506289 5'GT 78506289 Upstream 41bp
chr9 80880291 80880291 1 + T C rs200987172 80880295 + 80880275 80880315 41 TTCTCTCGACCAGGCTTGGGCAGCTTGCCACAATGGCTGGG TTCTCTCGACCAGGCTCGGGCAGCTTGCCACAATGGCTGGG < 41bp 1 0.367208707696666 1 0.349718540906906 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP78 ENSG00000148019 CDS Human protein_coding chr9:80880295 chr9:80880291 synonymous SNV . 0 17 hm5C_associated_SNPs_8193 0 0 0 0 1 CEP78 chr9:80880288 3'AG 80880288 Downstream 4bp
chr9 80912092 80912092 1 + C G rs561420026 80912087 + 80912067 80912107 41 ACGCCAGCCGTTCACGCGTTCGGTCCTCCTTGGCTGACTCA ACGCCAGCCGTTCACGCGTTCGGTCGTCCTTGGCTGACTCA < 41bp 1 0.577437839289622 1 0.365625590085983 experiment 0.845124321420756 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PSAT1 ENSG00000135069 UTR5 Human protein_coding chr9:80912087 chr9:80912092 . . 0 26 hm5C_associated_SNPs_8194 0 0 1 0 1 PSAT1 chr9:80912186 5'GT 80912186 Upstream 95bp
chr9 80942981 80942981 1 + C A rs148080212 80942983 + 80942963 80943003 41 TCAGTTGTCCAGTGGAGCCCCAAAATAGAAGCAAGATGAAT TCAGTTGTCCAGTGGAGCACCAAAATAGAAGCAAGATGAAT < 41bp 1 0.430619291529052 1 0.379784643650055 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80942983 chr9:80942981 nonsynonymous SNV 0.485 0 19 hm5C_associated_SNPs_8195 0 0 1 0 1 PSAT1 chr9:80942967 3'AG 80942967 Downstream 15bp
chr9 90261453 90261453 1 + G A rs17053276 90261459 + 90261439 90261479 41 ATTAAAAGAGGCTCGAGAATCGATGTCCAGGATAAGGTCAT ATTAAAAGAGGCTCAAGAATCGATGTCCAGGATAAGGTCAT < 41bp 1 0.185666590145022 1 0.535209834575653 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90261459 chr9:90261453 synonymous SNV . 0 15 hm5C_associated_SNPs_8205 0 0 0 0 2 DAPK1 chr9:90261376 3'AG 90261376 Downstream 78bp
chr9 90261453 90261453 1 + G A rs17053276 90261459 + 90261439 90261479 41 ATTAAAAGAGGCTCGAGAATCGATGTCCAGGATAAGGTCAT ATTAAAAGAGGCTCAAGAATCGATGTCCAGGATAAGGTCAT < 41bp 1 0.185666590145022 1 0.535209834575653 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90261459 chr9:90261453 synonymous SNV . 0 15 hm5C_associated_SNPs_8205 0 0 0 0 2 DAPK1 chr9:90261474 5'GT 90261474 Upstream 22bp
chr9 91033832 91033832 1 + A G rs141435006 91033844 + 91033824 91033864 41 TGCATGACACATAGCGAGTGCTCAGTGAACAGTCATTTTTC TGCATGACGCATAGCGAGTGCTCAGTGAACAGTCATTTTTC < 41bp 1 0.331967081146343 1 0.694426774978638 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPIN1 ENSG00000106723 UTR5 Human protein_coding chr9:91033844 chr9:91033832 . . 0 9 hm5C_associated_SNPs_8206 0 0 1 0 1 SPIN1 chr9:91033866 5'GT 91033866 Upstream 35bp
chr9 91083288 91083288 1 + G A rs61999324 91083287 + 91083267 91083307 41 TTTTTTTTTTTAATCCCCAGCGACATCTCGAATCAGCGATG TTTTTTTTTTTAATCCCCAGCAACATCTCGAATCAGCGATG < 41bp 1 0.29388644822274 1 0.407465875148773 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPIN1 ENSG00000106723 CDS Human protein_coding chr9:91083287 chr9:91083288 synonymous SNV . 0 22 hm5C_associated_SNPs_8207 0 0 1 0 1 SPIN1 chr9:91083287 3'AG 91083287 Downstream 2bp
chr9 91933470 91933470 1 + G A rs193197080 91933469 + 91933449 91933489 41 CGCTGCTGGCCTCCGTGACGCGGCCTCCTCCGCGCCTCGCG CGCTGCTGGCCTCCGTGACGCAGCCTCCTCCGCGCCTCGCG < 41bp 1 0.700587394350175 1 0.787618398666382 experiment 0.598825211299651 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SECISBP2 ENSG00000187742 UTR5 Human protein_coding chr9:91933469 chr9:91933470 . . 0 22 hm5C_associated_SNPs_8212 0 0 1 0 1 SECISBP2 chr9:91933527 5'GT 91933527 Upstream 58bp
chr9 91933470 91933470 1 + G A rs193197080 91933472 + 91933452 91933492 41 TGCTGGCCTCCGTGACGCGGCCTCCTCCGCGCCTCGCGGCA TGCTGGCCTCCGTGACGCAGCCTCCTCCGCGCCTCGCGGCA < 41bp 1 0.12410166408207 1 0.071450799703598 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SECISBP2 ENSG00000187742 UTR5 Human protein_coding chr9:91933472 chr9:91933470 . . 0 19 hm5C_associated_SNPs_8213 0 0 1 0 1 SECISBP2 chr9:91933527 5'GT 91933527 Upstream 58bp
chr9 91933470 91933470 1 + G A rs193197080 91933475 + 91933455 91933495 41 TGGCCTCCGTGACGCGGCCTCCTCCGCGCCTCGCGGCATGG TGGCCTCCGTGACGCAGCCTCCTCCGCGCCTCGCGGCATGG < 41bp 1 0.167968184065459 1 0.0798941850662231 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SECISBP2 ENSG00000187742 UTR5 Human protein_coding chr9:91933475 chr9:91933470 . . 0 16 hm5C_associated_SNPs_8214 0 0 1 0 1 SECISBP2 chr9:91933527 5'GT 91933527 Upstream 58bp
chr9 91933470 91933470 1 + G A rs193197080 91933476 + 91933456 91933496 41 GGCCTCCGTGACGCGGCCTCCTCCGCGCCTCGCGGCATGGC GGCCTCCGTGACGCAGCCTCCTCCGCGCCTCGCGGCATGGC < 41bp 1 0.749654467463318 1 0.304888606071472 experiment 0.500691065073365 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SECISBP2 ENSG00000187742 UTR5 Human protein_coding chr9:91933476 chr9:91933470 . . 0 15 hm5C_associated_SNPs_8215 0 0 1 0 1 SECISBP2 chr9:91933527 5'GT 91933527 Upstream 58bp
chr9 91933470 91933470 1 + G A rs193197080 91933478 + 91933458 91933498 41 CCTCCGTGACGCGGCCTCCTCCGCGCCTCGCGGCATGGCGT CCTCCGTGACGCAGCCTCCTCCGCGCCTCGCGGCATGGCGT < 41bp 1 0.718080247203275 1 0.302297413349152 experiment 0.56383950559345 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SECISBP2 ENSG00000187742 UTR5 Human protein_coding chr9:91933478 chr9:91933470 . . 0 13 hm5C_associated_SNPs_8216 0 0 1 0 1 SECISBP2 chr9:91933527 5'GT 91933527 Upstream 58bp
chr9 91933470 91933470 1 + G A rs193197080 91933479 + 91933459 91933499 41 CTCCGTGACGCGGCCTCCTCCGCGCCTCGCGGCATGGCGTC CTCCGTGACGCAGCCTCCTCCGCGCCTCGCGGCATGGCGTC < 41bp 1 0.790900984764226 1 0.770947813987732 experiment 0.418198030471548 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SECISBP2 ENSG00000187742 UTR5 Human protein_coding chr9:91933479 chr9:91933470 . . 0 12 hm5C_associated_SNPs_8217 0 0 1 0 1 SECISBP2 chr9:91933527 5'GT 91933527 Upstream 58bp
chr9 95869981 95869981 1 + G A rs74414352 95869992 + 95869972 95870012 41 CCGCCTGGTGCAGGACACGCCTTTCCTGACAGGCCATGGGC CCGCCTGGTACAGGACACGCCTTTCCTGACAGGCCATGGGC < 41bp 1 0.045553154616748 1 0.0390989184379578 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARD19 ENSG00000165233 CDS Human protein_coding chr9:95869992 chr9:95869981 synonymous SNV . 0 10 hm5C_associated_SNPs_8219 0 0 1 0 1 CARD19 chr9:95869956 3'AG 95869956 Downstream 26bp
chr9 95870005 95870005 1 + C A rs34200537 95869992 + 95869972 95870012 41 CCGCCTGGTGCAGGACACGCCTTTCCTGACAGGCCATGGGC CCGCCTGGTGCAGGACACGCCTTTCCTGACAGGACATGGGC < 41bp 1 0.0479532234239774 1 0.0639085471630096 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARD19 ENSG00000165233 CDS Human protein_coding chr9:95869992 chr9:95870005 synonymous SNV . 0 34 hm5C_associated_SNPs_8220 0 0 1 0 2 CARD19 chr9:95869956 3'AG 95869956 Downstream 50bp
chr9 95870005 95870005 1 + C A rs34200537 95869992 + 95869972 95870012 41 CCGCCTGGTGCAGGACACGCCTTTCCTGACAGGCCATGGGC CCGCCTGGTGCAGGACACGCCTTTCCTGACAGGACATGGGC < 41bp 1 0.0479532234239774 1 0.0639085471630096 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARD19 ENSG00000165233 CDS Human protein_coding chr9:95869992 chr9:95870005 synonymous SNV . 0 34 hm5C_associated_SNPs_8220 0 0 1 0 2 CARD19 chr9:95870098 5'GT 95870098 Upstream 94bp
chr9 97686330 97686330 1 + G A rs10993400 97686328 + 97686308 97686348 41 GGGAACCATCTCTGTGGGACCCGCCTCTGCCATGAAATTGC GGGAACCATCTCTGTGGGACCCACCTCTGCCATGAAATTGC < 41bp 1 0.0569147858453193 1 0.0612650513648987 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control C9orf3 ENSG00000148120 CDS Human protein_coding chr9:97686328 chr9:97686330 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_8222 0 0 1 0 1 C9orf3 chr9:97686268 3'AG 97686268 Downstream 63bp
chr9 97690733 97690733 1 + G A rs142764274 97690731 + 97690711 97690751 41 CCCCCTATGAGGCCCGGGAGCAGCAGGAGCTGAGGGCTTGT CCCCCTATGAGGCCCGGGAGCAACAGGAGCTGAGGGCTTGT < 41bp 1 0.668177186511832 1 0.417754769325256 experiment 0.663645626976336 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control C9orf3 ENSG00000148120 CDS Human protein_coding chr9:97690731 chr9:97690733 synonymous SNV . 0 23 hm5C_associated_SNPs_8223 0 0 0 0 2 C9orf3 chr9:97690707 3'AG 97690707 Downstream 27bp
chr9 97690733 97690733 1 + G A rs142764274 97690731 + 97690711 97690751 41 CCCCCTATGAGGCCCGGGAGCAGCAGGAGCTGAGGGCTTGT CCCCCTATGAGGCCCGGGAGCAACAGGAGCTGAGGGCTTGT < 41bp 1 0.668177186511832 1 0.417754769325256 experiment 0.663645626976336 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control C9orf3 ENSG00000148120 CDS Human protein_coding chr9:97690731 chr9:97690733 synonymous SNV . 0 23 hm5C_associated_SNPs_8223 0 0 0 0 2 C9orf3 chr9:97690813 5'GT 97690813 Upstream 81bp
chr9 98678698 98678698 1 + G C rs150328847 98678714 + 98678694 98678734 41 AGTTGCCTAAGAAGGAAGACCGGGTAAGAACCGCATTTGTA AGTTCCCTAAGAAGGAAGACCGGGTAAGAACCGCATTTGTA < 41bp 1 0.447351388638233 1 0.560996115207672 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ERCC6L2 ENSG00000182150 CDS Human protein_coding chr9:98678714 chr9:98678698 nonsynonymous SNV 1.000 5 5 hm5C_associated_SNPs_8224 0 0 0 0 1 ERCC6L2 chr9:98678716 5'GT 98678716 Upstream 19bp
chr9 100079355 100079355 1 + C T rs970857 100079373 + 100079353 100079393 41 AACTATGCCCTGCTGGGCAACCGGAAGGCTCTCGCCCAGCT AATTATGCCCTGCTGGGCAACCGGAAGGCTCTCGCCCAGCT < 41bp 1 0.711418142271756 1 0.598756432533264 experiment 0.577163715456488 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100079373 chr9:100079355 synonymous SNV . 0 3 hm5C_associated_SNPs_8225 0 0 1 2 1 CCDC180 chr9:100079347 3'AG 100079347 Downstream 9bp
chr9 100079386 100079386 1 + G A rs41281928 100079373 + 100079353 100079393 41 AACTATGCCCTGCTGGGCAACCGGAAGGCTCTCGCCCAGCT AACTATGCCCTGCTGGGCAACCGGAAGGCTCTCACCCAGCT < 41bp 1 0.645468540744504 1 0.635444283485413 experiment 0.709062918510993 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100079373 chr9:100079386 nonsynonymous SNV 0.981 0 34 hm5C_associated_SNPs_8226 0 0 1 0 1 CCDC180 chr9:100079347 3'AG 100079347 Downstream 40bp
chr9 100174444 100174444 1 + G C rs373486700 100174437 + 100174417 100174457 41 GGGAAACCGAAAGTGGGCGGCGGCCGCGGCGGGGCCCCTGG GGGAAACCGAAAGTGGGCGGCGGCCGCCGCGGGGCCCCTGG < 41bp 1 0.767780022047038 1 0.850878238677979 experiment 0.464439955905923 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TDRD7 ENSG00000196116 UTR5 Human protein_coding chr9:100174437 chr9:100174444 . . 0 28 hm5C_associated_SNPs_8227 1 0 1 0 1 TDRD7 chr9:100174520 5'GT 100174520 Upstream 77bp
chr9 100234756 100234756 1 + G A rs41281938 100234769 + 100234749 100234789 41 GTGACAAGTCACTAGAGGTTCACCTGCAGGTACCACTGTGA GTGACAAATCACTAGAGGTTCACCTGCAGGTACCACTGTGA < 41bp 1 0.352723977357813 1 0.0448298454284668 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TDRD7 ENSG00000196116 CDS Human protein_coding chr9:100234769 chr9:100234756 synonymous SNV . 0 8 hm5C_associated_SNPs_8228 1 0 0 0 1 TDRD7 chr9:100234777 5'GT 100234777 Upstream 22bp
chr9 100760942 100760942 1 + C A rs535530800 100760956 + 100760936 100760976 41 AGATATCAGCACCTTGGAACCTTTGGTAAGTAACTGAGAAT AGATATAAGCACCTTGGAACCTTTGGTAAGTAACTGAGAAT < 41bp 1 0.20453868250132 1 0.271602302789688 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100760956 chr9:100760942 synonymous SNV . 0 7 hm5C_associated_SNPs_8230 0 0 1 0 1 ANP32B chr9:100760960 5'GT 100760960 Upstream 19bp
chr9 100767398 100767398 1 + C T rs144253360 100767397 + 100767377 100767417 41 GGAAGCACCTGACTCAGATGCCGAGGTGGATGGTGTGGATG GGAAGCACCTGACTCAGATGCTGAGGTGGATGGTGTGGATG < 41bp 1 0.771732670806154 1 0.31056347489357 experiment 0.456534658387692 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100767397 chr9:100767398 synonymous SNV . 0 22 hm5C_associated_SNPs_8231 0 0 1 0 1 ANP32B chr9:100767435 5'GT 100767435 Upstream 38bp
chr9 100773572 100773572 1 + C T rs553733827 100773578 + 100773558 100773598 41 GAAGATGAGGAAGACGAGGACGATGAGGATGGTGAAGAAGA GAAGATGAGGAAGATGAGGACGATGAGGATGGTGAAGAAGA < 41bp 1 0.257189820415434 1 0.155739456415176 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773578 chr9:100773572 synonymous SNV . 0 15 hm5C_associated_SNPs_8232 0 0 1 0 2 ANP32B chr9:100773553 3'AG 100773553 Downstream 20bp
chr9 100773572 100773572 1 + C T rs553733827 100773578 + 100773558 100773598 41 GAAGATGAGGAAGACGAGGACGATGAGGATGGTGAAGAAGA GAAGATGAGGAAGATGAGGACGATGAGGATGGTGAAGAAGA < 41bp 1 0.257189820415434 1 0.155739456415176 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773578 chr9:100773572 synonymous SNV . 0 15 hm5C_associated_SNPs_8232 0 0 1 0 2 ANP32B chr9:100773671 5'GT 100773671 Upstream 100bp
chr9 100773575 100773575 1 + G A rs61757703 100773572 + 100773552 100773592 41 GAAGGAGAAGATGAGGAAGACGAGGACGATGAGGATGGTGA GAAGGAGAAGATGAGGAAGACGAAGACGATGAGGATGGTGA < 41bp 1 0.396575384353009 1 0.42527186870575 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773572 chr9:100773575 synonymous SNV . 0 24 hm5C_associated_SNPs_8233 0 0 1 0 2 ANP32B chr9:100773553 3'AG 100773553 Downstream 23bp
chr9 100773575 100773575 1 + G A rs61757703 100773572 + 100773552 100773592 41 GAAGGAGAAGATGAGGAAGACGAGGACGATGAGGATGGTGA GAAGGAGAAGATGAGGAAGACGAAGACGATGAGGATGGTGA < 41bp 1 0.396575384353009 1 0.42527186870575 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773572 chr9:100773575 synonymous SNV . 0 24 hm5C_associated_SNPs_8233 0 0 1 0 2 ANP32B chr9:100773671 5'GT 100773671 Upstream 97bp
chr9 100773575 100773575 1 + G A rs61757703 100773578 + 100773558 100773598 41 GAAGATGAGGAAGACGAGGACGATGAGGATGGTGAAGAAGA GAAGATGAGGAAGACGAAGACGATGAGGATGGTGAAGAAGA < 41bp 1 0.355292775135932 1 0.187925457954407 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773578 chr9:100773575 synonymous SNV . 0 18 hm5C_associated_SNPs_8234 0 0 1 0 2 ANP32B chr9:100773553 3'AG 100773553 Downstream 23bp
chr9 100773575 100773575 1 + G A rs61757703 100773578 + 100773558 100773598 41 GAAGATGAGGAAGACGAGGACGATGAGGATGGTGAAGAAGA GAAGATGAGGAAGACGAAGACGATGAGGATGGTGAAGAAGA < 41bp 1 0.355292775135932 1 0.187925457954407 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773578 chr9:100773575 synonymous SNV . 0 18 hm5C_associated_SNPs_8234 0 0 1 0 2 ANP32B chr9:100773671 5'GT 100773671 Upstream 97bp
chr9 100773578 100773578 1 + C T rs35618988 100773572 + 100773552 100773592 41 GAAGGAGAAGATGAGGAAGACGAGGACGATGAGGATGGTGA GAAGGAGAAGATGAGGAAGACGAGGATGATGAGGATGGTGA < 41bp 1 0.692143841301266 1 0.360662162303925 experiment 0.615712317397467 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773572 chr9:100773578 synonymous SNV . 0 27 hm5C_associated_SNPs_8235 0 0 1 0 2 ANP32B chr9:100773553 3'AG 100773553 Downstream 26bp
chr9 100773578 100773578 1 + C T rs35618988 100773572 + 100773552 100773592 41 GAAGGAGAAGATGAGGAAGACGAGGACGATGAGGATGGTGA GAAGGAGAAGATGAGGAAGACGAGGATGATGAGGATGGTGA < 41bp 1 0.692143841301266 1 0.360662162303925 experiment 0.615712317397467 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773572 chr9:100773578 synonymous SNV . 0 27 hm5C_associated_SNPs_8235 0 0 1 0 2 ANP32B chr9:100773671 5'GT 100773671 Upstream 94bp
chr9 101765841 101765841 1 + C T rs10988532 101765832 + 101765812 101765852 41 CACCGGGGGACCAACCCTCTCTATGTCCACGGAGAACCCAG CACCGGGGGACCAACCCTCTCTATGTCCATGGAGAACCCAG < 41bp 1 0.276308706176237 1 0.0448741316795349 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765832 chr9:101765841 nonsynonymous SNV 0.006 3 30 hm5C_associated_SNPs_8236 0 0 0 0 1 COL15A1 chr9:101765869 5'GT 101765869 Upstream 29bp
chr9 101778346 101778346 1 + C A rs35529307 101778357 + 101778337 101778377 41 GCCCTCCCCCTGATGGGCCACCGCTGCCCCTGCCCACAGTG GCCCTCCCCATGATGGGCCACCGCTGCCCCTGCCCACAGTG < 41bp 1 0.143539307369267 1 0.0660971105098724 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101778357 chr9:101778346 nonsynonymous SNV 0.011 3 10 hm5C_associated_SNPs_8237 0 0 0 0 1 COL15A1 chr9:101778401 5'GT 101778401 Upstream 56bp
chr9 103002466 103002466 1 + A G rs41312220 103002451 + 103002431 103002471 41 CGTGGTTGATGTCTTGACCTCATATGAAAGCTGCAATATAA CGTGGTTGATGTCTTGACCTCATATGAAAGCTGCAGTATAA < 41bp 1 0.157189315797049 1 0.44045814871788 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control INVS ENSG00000119509 CDS Human protein_coding chr9:103002451 chr9:103002466 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_8239 2 0 0 0 1 INVS chr9:103002522 5'GT 103002522 Upstream 57bp
chr9 103008904 103008904 1 + G A rs116438342 103008902 + 103008882 103008922 41 TCAAGTTTTCTTACAGGAAACGGTTAAAGTGTTTTTAAAAC TCAAGTTTTCTTACAGGAAACGATTAAAGTGTTTTTAAAAC < 41bp 1 0.0591701253092929 1 0.260228753089905 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INVS ENSG00000119509 CDS Human protein_coding chr9:103008902 chr9:103008904 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_8240 1 0 0 0 2 INVS chr9:103008887 3'AG 103008887 Downstream 18bp
chr9 103008904 103008904 1 + G A rs116438342 103008902 + 103008882 103008922 41 TCAAGTTTTCTTACAGGAAACGGTTAAAGTGTTTTTAAAAC TCAAGTTTTCTTACAGGAAACGATTAAAGTGTTTTTAAAAC < 41bp 1 0.0591701253092929 1 0.260228753089905 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INVS ENSG00000119509 CDS Human protein_coding chr9:103008902 chr9:103008904 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_8240 1 0 0 0 2 INVS chr9:103008898 3'AG 103008898 Downstream 7bp
chr9 104307062 104307062 1 + G A rs531422157 104307070 + 104307050 104307090 41 TAATCTGATAGTGGAGGAAGCAGTGCAGGAGCTGAACTCTT TAATCTGATAGTAGAGGAAGCAGTGCAGGAGCTGAACTCTT < 41bp 1 0.257035846012885 1 0.638039112091064 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF20 ENSG00000155827 CDS Human protein_coding chr9:104307070 chr9:104307062 synonymous SNV . 0 13 hm5C_associated_SNPs_8241 0 0 1 0 1 RNF20 chr9:104307049 3'AG 104307049 Downstream 14bp
chr9 106901506 106901506 1 + A G rs16923746 106901519 + 106901499 106901539 41 CTACAGTAGCCAGATTTACTCAATGTCAAAATGGAAAGATT CTACAGTGGCCAGATTTACTCAATGTCAAAATGGAAAGATT < 41bp 1 0.323431370757992 1 0.660120189189911 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMC2 ENSG00000136824 CDS Human protein_coding chr9:106901519 chr9:106901506 synonymous SNV . 0 8 hm5C_associated_SNPs_8242 0 0 1 0 1 SMC2 chr9:106901420 3'AG 106901420 Downstream 87bp
chr9 107515201 107515201 1 + C T rs34856872 107515213 + 107515193 107515233 41 TTGCTCATCGAACTGAAGTTCGGAAAGCCTTGGCCAAAGAT TTGCTCATTGAACTGAAGTTCGGAAAGCCTTGGCCAAAGAT < 41bp 1 0.744642465541516 1 0.864301979541779 experiment 0.510715068916969 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NIPSNAP3A ENSG00000136783 CDS Human protein_coding chr9:107515213 chr9:107515201 stopgain 0.942 1 9 hm5C_associated_SNPs_8244 0 0 1 0 1 NIPSNAP3A chr9:107515187 3'AG 107515187 Downstream 15bp
chr9 107515214 107515214 1 + G A rs2274870 107515213 + 107515193 107515233 41 TTGCTCATCGAACTGAAGTTCGGAAAGCCTTGGCCAAAGAT TTGCTCATCGAACTGAAGTTCAGAAAGCCTTGGCCAAAGAT < 41bp 1 0.692597290582052 1 0.797424554824829 experiment 0.614805418835896 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NIPSNAP3A ENSG00000136783 CDS Human protein_coding chr9:107515213 chr9:107515214 nonsynonymous SNV 0.927 1 22 hm5C_associated_SNPs_8245 0 1 1 0 1 NIPSNAP3A chr9:107515187 3'AG 107515187 Downstream 28bp
chr9 110086256 110086256 1 + G A rs61758755 110086266 + 110086246 110086286 41 TGCTTCCAGCGTTACTACAGCAGATAGGTCGAGAGAATCCT TGCTTCCAGCATTACTACAGCAGATAGGTCGAGAGAATCCT < 41bp 1 0.222475694068419 1 0.175016164779663 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD23B ENSG00000119318 CDS Human protein_coding chr9:110086266 chr9:110086256 synonymous SNV . 0 11 hm5C_associated_SNPs_8255 0 0 1 0 2 RAD23B chr9:110086171 3'AG 110086171 Downstream 86bp
chr9 110086256 110086256 1 + G A rs61758755 110086266 + 110086246 110086286 41 TGCTTCCAGCGTTACTACAGCAGATAGGTCGAGAGAATCCT TGCTTCCAGCATTACTACAGCAGATAGGTCGAGAGAATCCT < 41bp 1 0.222475694068419 1 0.175016164779663 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD23B ENSG00000119318 CDS Human protein_coding chr9:110086266 chr9:110086256 synonymous SNV . 0 11 hm5C_associated_SNPs_8255 0 0 1 0 2 RAD23B chr9:110086298 5'GT 110086298 Upstream 43bp
chr9 116750631 116750631 1 + C G rs149113651 116750645 + 116750625 116750665 41 GAGCACCAAGGTGGAGGGCCCAGAGCCAGTGCCAGCCGAGG GAGCACGAAGGTGGAGGGCCCAGAGCCAGTGCCAGCCGAGG < 41bp 1 0.418460976846577 1 0.389988660812378 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116750645 chr9:116750631 synonymous SNV . 0 7 hm5C_associated_SNPs_8263 0 0 1 0 1 ZNF618 chr9:116750601 3'AG 116750601 Downstream 31bp
chr9 116764917 116764917 1 + C T rs527710113 116764935 + 116764915 116764955 41 ACCTCAGGGGAGGGAGCCTCCCAAAGCAGTGAGTACTTTTT ACTTCAGGGGAGGGAGCCTCCCAAAGCAGTGAGTACTTTTT < 41bp 1 0.30174731712749 1 0.628002643585205 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116764935 chr9:116764917 synonymous SNV . 0 3 hm5C_associated_SNPs_8264 0 0 0 0 2 ZNF618 chr9:116764904 3'AG 116764904 Downstream 14bp
chr9 116764917 116764917 1 + C T rs527710113 116764935 + 116764915 116764955 41 ACCTCAGGGGAGGGAGCCTCCCAAAGCAGTGAGTACTTTTT ACTTCAGGGGAGGGAGCCTCCCAAAGCAGTGAGTACTTTTT < 41bp 1 0.30174731712749 1 0.628002643585205 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116764935 chr9:116764917 synonymous SNV . 0 3 hm5C_associated_SNPs_8264 0 0 0 0 2 ZNF618 chr9:116764942 5'GT 116764942 Upstream 26bp
chr9 116971981 116971981 1 + C T rs138060609 116971985 + 116971965 116972005 41 GGCTCCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAA GGCTCCCAGGGCTCTTTGGCCTGCCAGGGTCTGATGGAGAA < 41bp 1 0.139974672595362 1 0.102886170148849 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971985 chr9:116971981 synonymous SNV . 0 17 hm5C_associated_SNPs_8265 0 0 1 0 2 COL27A1 chr9:116971955 3'AG 116971955 Downstream 27bp
chr9 116971981 116971981 1 + C T rs138060609 116971985 + 116971965 116972005 41 GGCTCCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAA GGCTCCCAGGGCTCTTTGGCCTGCCAGGGTCTGATGGAGAA < 41bp 1 0.139974672595362 1 0.102886170148849 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971985 chr9:116971981 synonymous SNV . 0 17 hm5C_associated_SNPs_8265 0 0 1 0 2 COL27A1 chr9:116972008 5'GT 116972008 Upstream 28bp
chr9 116971981 116971981 1 + C T rs138060609 116971988 + 116971968 116972008 41 TCCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACGA TCCCAGGGCTCTTTGGCCTGCCAGGGTCTGATGGAGAACGA < 41bp 1 0.146709993153774 1 0.63696426153183 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971988 chr9:116971981 synonymous SNV . 0 14 hm5C_associated_SNPs_8266 0 0 1 0 2 COL27A1 chr9:116971955 3'AG 116971955 Downstream 27bp
chr9 116971981 116971981 1 + C T rs138060609 116971988 + 116971968 116972008 41 TCCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACGA TCCCAGGGCTCTTTGGCCTGCCAGGGTCTGATGGAGAACGA < 41bp 1 0.146709993153774 1 0.63696426153183 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971988 chr9:116971981 synonymous SNV . 0 14 hm5C_associated_SNPs_8266 0 0 1 0 2 COL27A1 chr9:116972008 5'GT 116972008 Upstream 28bp
chr9 116971981 116971981 1 + C T rs138060609 116971989 + 116971969 116972009 41 CCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACGAG CCCAGGGCTCTTTGGCCTGCCAGGGTCTGATGGAGAACGAG < 41bp 1 0.332149490353264 1 0.725806295871735 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971989 chr9:116971981 synonymous SNV . 0 13 hm5C_associated_SNPs_8267 0 0 1 0 2 COL27A1 chr9:116971955 3'AG 116971955 Downstream 27bp
chr9 116971981 116971981 1 + C T rs138060609 116971989 + 116971969 116972009 41 CCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACGAG CCCAGGGCTCTTTGGCCTGCCAGGGTCTGATGGAGAACGAG < 41bp 1 0.332149490353264 1 0.725806295871735 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971989 chr9:116971981 synonymous SNV . 0 13 hm5C_associated_SNPs_8267 0 0 1 0 2 COL27A1 chr9:116972008 5'GT 116972008 Upstream 28bp
chr9 117063984 117063984 1 + G A rs565852420 117063993 + 117063973 117064013 41 CCCCAGAGGGCGGCCCGGCCCCCCGGTAGGTAACTGAGTGC CCCCAGAGGGCAGCCCGGCCCCCCGGTAGGTAACTGAGTGC < 41bp 1 0.344596469207929 1 0.369138598442078 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117063993 chr9:117063984 nonsynonymous SNV 0.162 1 12 hm5C_associated_SNPs_8268 0 0 1 0 1 COL27A1 chr9:117063997 5'GT 117063997 Upstream 14bp
chr9 117400957 117400957 1 + C T rs34024960 117400977 + 117400957 117400997 41 CACTCATGCAGACTGAGCTTCATCAGCTTGTTCCTGAGGCT TACTCATGCAGACTGAGCTTCATCAGCTTGTTCCTGAGGCT < 41bp 1 0.353163337556325 1 0.130630165338516 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM268 ENSG00000157693 CDS Human protein_coding chr9:117400977 chr9:117400957 nonsynonymous SNV 0.530 0 1 hm5C_associated_SNPs_8269 0 0 1 0 1 TMEM268 chr9:117401006 5'GT 117401006 Upstream 50bp
chr9 124062241 124062241 1 + G T rs369326886 124062243 + 124062223 124062263 41 CACTGCGTCGCGGGGGGCGTCCCAGGCGGGGGCGCCCCAGG CACTGCGTCGCGGGGGGCTTCCCAGGCGGGGGCGCCCCAGG < 41bp 1 0.597751359188868 1 0.69160521030426 experiment 0.804497281622263 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062243 chr9:124062241 synonymous SNV . 0 19 hm5C_associated_SNPs_8272 0 0 1 0 1 GSN chr9:124062283 5'GT 124062283 Upstream 43bp
chr9 124062241 124062241 1 + G T rs369326886 124062244 + 124062224 124062264 41 ACTGCGTCGCGGGGGGCGTCCCAGGCGGGGGCGCCCCAGGG ACTGCGTCGCGGGGGGCTTCCCAGGCGGGGGCGCCCCAGGG < 41bp 1 0.796064377719869 1 0.826332569122314 experiment 0.407871244560263 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062244 chr9:124062241 synonymous SNV . 0 18 hm5C_associated_SNPs_8273 0 0 1 0 1 GSN chr9:124062283 5'GT 124062283 Upstream 43bp
chr9 124062241 124062241 1 + G T rs369326886 124062255 + 124062235 124062275 41 GGGGGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCG GGGGGCTTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCG < 41bp 1 0.439450980889205 1 0.574721455574036 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062255 chr9:124062241 synonymous SNV . 0 7 hm5C_associated_SNPs_8274 0 0 1 0 1 GSN chr9:124062283 5'GT 124062283 Upstream 43bp
chr9 124062241 124062241 1 + G T rs369326886 124062257 + 124062237 124062277 41 GGGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCGAG GGGCTTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCGAG < 41bp 1 0.635227019601187 1 0.635010123252869 experiment 0.729545960797626 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062257 chr9:124062241 synonymous SNV . 0 5 hm5C_associated_SNPs_8275 0 0 1 0 1 GSN chr9:124062283 5'GT 124062283 Upstream 43bp
chr9 124062241 124062241 1 + G T rs369326886 124062258 + 124062238 124062278 41 GGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCGAGG GGCTTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCGAGG < 41bp 1 0.49934936069895 1 0.71086585521698 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062258 chr9:124062241 synonymous SNV . 0 4 hm5C_associated_SNPs_8276 0 0 1 0 1 GSN chr9:124062283 5'GT 124062283 Upstream 43bp
chr9 125772713 125772713 1 + G A rs78302239 125772700 + 125772680 125772720 41 TGTATGCTTGGAAAGTGAATCAGAAAGAGAGAGGAGGAAAA TGTATGCTTGGAAAGTGAATCAGAAAGAGAGAGAAGGAAAA < 41bp 1 0.572791085587781 1 0.455893605947495 experiment 0.854417828824438 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABGAP1 ENSG00000011454 CDS Human protein_coding chr9:125772700 chr9:125772713 synonymous SNV . 0 34 hm5C_associated_SNPs_8277 0 0 1 0 2 RABGAP1 chr9:125772633 3'AG 125772633 Downstream 81bp
chr9 125772713 125772713 1 + G A rs78302239 125772700 + 125772680 125772720 41 TGTATGCTTGGAAAGTGAATCAGAAAGAGAGAGGAGGAAAA TGTATGCTTGGAAAGTGAATCAGAAAGAGAGAGAAGGAAAA < 41bp 1 0.572791085587781 1 0.455893605947495 experiment 0.854417828824438 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABGAP1 ENSG00000011454 CDS Human protein_coding chr9:125772700 chr9:125772713 synonymous SNV . 0 34 hm5C_associated_SNPs_8277 0 0 1 0 2 RABGAP1 chr9:125772807 5'GT 125772807 Upstream 95bp
chr9 125772714 125772714 1 + A C rs137893790 125772700 + 125772680 125772720 41 TGTATGCTTGGAAAGTGAATCAGAAAGAGAGAGGAGGAAAA TGTATGCTTGGAAAGTGAATCAGAAAGAGAGAGGCGGAAAA < 41bp 1 0.648145798362764 1 0.595414459705353 experiment 0.703708403274472 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABGAP1 ENSG00000011454 CDS Human protein_coding chr9:125772700 chr9:125772714 synonymous SNV . 0 35 hm5C_associated_SNPs_8278 0 0 1 0 2 RABGAP1 chr9:125772633 3'AG 125772633 Downstream 82bp
chr9 125772714 125772714 1 + A C rs137893790 125772700 + 125772680 125772720 41 TGTATGCTTGGAAAGTGAATCAGAAAGAGAGAGGAGGAAAA TGTATGCTTGGAAAGTGAATCAGAAAGAGAGAGGCGGAAAA < 41bp 1 0.648145798362764 1 0.595414459705353 experiment 0.703708403274472 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABGAP1 ENSG00000011454 CDS Human protein_coding chr9:125772700 chr9:125772714 synonymous SNV . 0 35 hm5C_associated_SNPs_8278 0 0 1 0 2 RABGAP1 chr9:125772807 5'GT 125772807 Upstream 94bp
chr9 127101899 127101899 1 + C A rs543844372 127101884 + 127101864 127101904 41 TACATGTCACCGGAGAGGATCCATGAGAACGGCTACAACTT TACATGTCACCGGAGAGGATCCATGAGAACGGCTAAAACTT < 41bp 1 0.0897403757095981 1 0.0377092957496643 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NEK6 ENSG00000119408 CDS Human protein_coding chr9:127101884 chr9:127101899 stopgain 0.999 1 36 hm5C_associated_SNPs_8279 0 0 1 0 2 NEK6 chr9:127101850 3'AG 127101850 Downstream 50bp
chr9 127101899 127101899 1 + C A rs543844372 127101884 + 127101864 127101904 41 TACATGTCACCGGAGAGGATCCATGAGAACGGCTACAACTT TACATGTCACCGGAGAGGATCCATGAGAACGGCTAAAACTT < 41bp 1 0.0897403757095981 1 0.0377092957496643 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NEK6 ENSG00000119408 CDS Human protein_coding chr9:127101884 chr9:127101899 stopgain 0.999 1 36 hm5C_associated_SNPs_8279 0 0 1 0 2 NEK6 chr9:127101944 5'GT 127101944 Upstream 46bp
chr9 127561691 127561691 1 + G A rs115504825 127561684 + 127561664 127561704 41 TGCTGGGCATCAAGAAGGAGCTGTCCCGCCTGGGCCTCCAG TGCTGGGCATCAAGAAGGAGCTGTCCCACCTGGGCCTCCAG < 41bp 1 0.0747501771540122 1 0.31799304485321 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OLFML2A ENSG00000185585 CDS Human protein_coding chr9:127561684 chr9:127561691 nonsynonymous SNV 0.952 2 28 hm5C_associated_SNPs_8280 0 0 0 0 1 OLFML2A chr9:127561770 5'GT 127561770 Upstream 80bp
chr9 127982837 127982837 1 + G A rs78598675 127982849 + 127982829 127982869 41 TGGACCACGCCAGAAGTGACCAGCCCCCCACCATCCCCAAG TGGACCACACCAGAAGTGACCAGCCCCCCACCATCCCCAAG < 41bp 1 0.55788944807958 1 0.502528011798859 experiment 0.884221103840841 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RABEPK ENSG00000136933 CDS Human protein_coding chr9:127982849 chr9:127982837 nonsynonymous SNV 0.088 1 9 hm5C_associated_SNPs_8281 0 0 1 0 1 RABEPK chr9:127982818 3'AG 127982818 Downstream 20bp
chr9 127982839 127982839 1 + C A rs74769898 127982849 + 127982829 127982869 41 TGGACCACGCCAGAAGTGACCAGCCCCCCACCATCCCCAAG TGGACCACGCAAGAAGTGACCAGCCCCCCACCATCCCCAAG < 41bp 1 0.639279125975109 1 0.615866243839264 experiment 0.721441748049781 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RABEPK ENSG00000136933 CDS Human protein_coding chr9:127982849 chr9:127982839 nonsynonymous SNV 0.638 3 11 hm5C_associated_SNPs_8282 0 0 1 0 1 RABEPK chr9:127982818 3'AG 127982818 Downstream 22bp
chr9 130549811 130549811 1 + C A rs34238383 130549823 + 130549803 130549843 41 ATTACAGCCTTGCGGGAGATCAAGATCCTTCAGCTTCTAAA ATTACAGCATTGCGGGAGATCAAGATCCTTCAGCTTCTAAA < 41bp 1 0.774485093312246 1 0.700615584850311 experiment 0.451029813375507 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK9 ENSG00000136807 CDS Human protein_coding chr9:130549823 chr9:130549811 synonymous SNV . 0 9 hm5C_associated_SNPs_8287 0 0 1 0 2 CDK9 chr9:130549797 3'AG 130549797 Downstream 15bp
chr9 130549811 130549811 1 + C A rs34238383 130549823 + 130549803 130549843 41 ATTACAGCCTTGCGGGAGATCAAGATCCTTCAGCTTCTAAA ATTACAGCATTGCGGGAGATCAAGATCCTTCAGCTTCTAAA < 41bp 1 0.774485093312246 1 0.700615584850311 experiment 0.451029813375507 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK9 ENSG00000136807 CDS Human protein_coding chr9:130549823 chr9:130549811 synonymous SNV . 0 9 hm5C_associated_SNPs_8287 0 0 1 0 2 CDK9 chr9:130549887 5'GT 130549887 Upstream 77bp
chr9 130565267 130565267 1 + A C rs10760502 130565266 + 130565246 130565286 41 GCAGCGGCGTCTGCGCGCGGCATAACGACCCAGGTCGCGGC GCAGCGGCGTCTGCGCGCGGCCTAACGACCCAGGTCGCGGC < 41bp 1 0.132537686117874 1 0.0555700659751892 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FPGS ENSG00000136877 CDS Human protein_coding chr9:130565266 chr9:130565267 nonsynonymous SNV 0.020 0 22 hm5C_associated_SNPs_8290 0 0 1 0 1 FPGS chr9:130565341 5'GT 130565341 Upstream 75bp
chr9 131088076 131088076 1 + G A rs2270203 131088068 + 131088048 131088088 41 TGCCTTTCAGGGAGCGTCCCCGGATTTCGACATCCACCCTC TGCCTTTCAGGGAGCGTCCCCGGATTTCAACATCCACCCTC < 41bp 1 0.763867904294575 1 0.319317400455475 experiment 0.47226419141085 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COQ4 ENSG00000167113 CDS Human protein_coding chr9:131088068 chr9:131088076 synonymous SNV . 0 29 hm5C_associated_SNPs_8297 1 0 1 0 2 COQ4 chr9:131088058 3'AG 131088058 Downstream 19bp
chr9 131088076 131088076 1 + G A rs2270203 131088068 + 131088048 131088088 41 TGCCTTTCAGGGAGCGTCCCCGGATTTCGACATCCACCCTC TGCCTTTCAGGGAGCGTCCCCGGATTTCAACATCCACCCTC < 41bp 1 0.763867904294575 1 0.319317400455475 experiment 0.47226419141085 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COQ4 ENSG00000167113 CDS Human protein_coding chr9:131088068 chr9:131088076 synonymous SNV . 0 29 hm5C_associated_SNPs_8297 1 0 1 0 2 COQ4 chr9:131088160 5'GT 131088160 Upstream 85bp
chr9 131133656 131133656 1 + C A rs201029924 131133638 + 131133618 131133658 41 CGGAAGTTGAGGGGAGTTTCCTGCGAGCTCGGCTTCCTCAA CGGAAGTTGAGGGGAGTTTCCTGCGAGCTCGGCTTCCTAAA < 41bp 1 0.769473722088462 1 0.471029192209244 experiment 0.461052555823076 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MIR1268A ENSG00000167118 UTR5 Human protein_coding chr9:131133638 chr9:131133656 . . 0 39 hm5C_associated_SNPs_8299 0 0 1 0 1 URM1 chr9:131133694 5'GT 131133694 Upstream 39bp
chr9 131185521 131185521 1 + C A rs139357437 131185530 + 131185510 131185550 41 TTTGCCAGGAACTGGGGGGCCGACTATATCCTGGTGAGGAA TTTGCCAGGAAATGGGGGGCCGACTATATCCTGGTGAGGAA < 41bp 1 0.239417094278564 1 0.323559820652008 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131185530 chr9:131185521 nonsynonymous SNV 0.978 1 12 hm5C_associated_SNPs_8304 0 0 0 0 2 CERCAM chr9:131185425 3'AG 131185425 Downstream 97bp
chr9 131185521 131185521 1 + C A rs139357437 131185530 + 131185510 131185550 41 TTTGCCAGGAACTGGGGGGCCGACTATATCCTGGTGAGGAA TTTGCCAGGAAATGGGGGGCCGACTATATCCTGGTGAGGAA < 41bp 1 0.239417094278564 1 0.323559820652008 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131185530 chr9:131185521 nonsynonymous SNV 0.978 1 12 hm5C_associated_SNPs_8304 0 0 0 0 2 CERCAM chr9:131185542 5'GT 131185542 Upstream 22bp
chr9 131193481 131193481 1 + G A rs143305223 131193480 + 131193460 131193500 41 AGCAGTGCCATCAGGAACCTCGGCGTAGACCTGCTCCCGGG AGCAGTGCCATCAGGAACCTCAGCGTAGACCTGCTCCCGGG < 41bp 1 0.709719086118288 1 0.6413254737854 experiment 0.580561827763425 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131193480 chr9:131193481 nonsynonymous SNV 0.355 3 22 hm5C_associated_SNPs_8305 0 0 1 0 1 CERCAM chr9:131193450 3'AG 131193450 Downstream 32bp
chr9 131196695 131196695 1 + C T rs7258 131196705 + 131196685 131196725 41 ACAGCTACCTCGGACGGAAGCAGGTGAACCCTGAGAAGGAG ACAGCTACCTTGGACGGAAGCAGGTGAACCCTGAGAAGGAG < 41bp 1 0.621766806373498 1 0.807101845741272 experiment 0.756466387253005 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131196705 chr9:131196695 synonymous SNV . 0 11 hm5C_associated_SNPs_8306 0 0 1 0 1 CERCAM chr9:131196689 3'AG 131196689 Downstream 7bp
chr9 131196704 131196704 1 + G A rs7259 131196705 + 131196685 131196725 41 ACAGCTACCTCGGACGGAAGCAGGTGAACCCTGAGAAGGAG ACAGCTACCTCGGACGGAAACAGGTGAACCCTGAGAAGGAG < 41bp 1 0.653791718928171 1 0.813618302345276 experiment 0.692416562143659 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131196705 chr9:131196704 synonymous SNV . 0 20 hm5C_associated_SNPs_8307 0 0 1 0 1 CERCAM chr9:131196689 3'AG 131196689 Downstream 16bp
chr9 131345032 131345032 1 + C T rs115428827 131345031 + 131345011 131345051 41 GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATCTGCAGC GCGTCGCCGGGCCCAGCTAGCTGATTCTTTCCATCTGCAGC < 41bp 1 0.279127133701451 1 0.0467479825019836 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131345031 chr9:131345032 synonymous SNV . 0 22 hm5C_associated_SNPs_8308 3 0 1 0 2 SPTAN1 chr9:131344973 3'AG 131344973 Downstream 60bp
chr9 131345032 131345032 1 + C T rs115428827 131345031 + 131345011 131345051 41 GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATCTGCAGC GCGTCGCCGGGCCCAGCTAGCTGATTCTTTCCATCTGCAGC < 41bp 1 0.279127133701451 1 0.0467479825019836 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131345031 chr9:131345032 synonymous SNV . 0 22 hm5C_associated_SNPs_8308 3 0 1 0 2 SPTAN1 chr9:131345128 5'GT 131345128 Upstream 97bp
chr9 131351096 131351096 1 + G A rs150731568 131351098 + 131351078 131351118 41 GGATTTTTAGCAACAAGTGGCCCCCACGGATGATGAGACTG GGATTTTTAGCAACAAGTAGCCCCCACGGATGATGAGACTG < 41bp 1 0.0285635143721557 1 0.11132287979126 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131351098 chr9:131351096 synonymous SNV . 0 19 hm5C_associated_SNPs_8309 2 0 1 0 1 SPTAN1 chr9:131351088 3'AG 131351088 Downstream 9bp
chr9 131351096 131351096 1 + G A rs150731568 131351099 + 131351079 131351119 41 GATTTTTAGCAACAAGTGGCCCCCACGGATGATGAGACTGG GATTTTTAGCAACAAGTAGCCCCCACGGATGATGAGACTGG < 41bp 1 0.163674900753012 1 0.322027325630188 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131351099 chr9:131351096 synonymous SNV . 0 18 hm5C_associated_SNPs_8310 2 0 1 0 1 SPTAN1 chr9:131351088 3'AG 131351088 Downstream 9bp
chr9 131351096 131351096 1 + G A rs150731568 131351100 + 131351080 131351120 41 ATTTTTAGCAACAAGTGGCCCCCACGGATGATGAGACTGGG ATTTTTAGCAACAAGTAGCCCCCACGGATGATGAGACTGGG < 41bp 1 0.0331725795964865 1 0.172164589166641 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131351100 chr9:131351096 synonymous SNV . 0 17 hm5C_associated_SNPs_8311 2 0 1 0 1 SPTAN1 chr9:131351088 3'AG 131351088 Downstream 9bp
chr9 131351096 131351096 1 + G A rs150731568 131351104 + 131351084 131351124 41 TTAGCAACAAGTGGCCCCCACGGATGATGAGACTGGGAAGG TTAGCAACAAGTAGCCCCCACGGATGATGAGACTGGGAAGG < 41bp 1 0.149377868690945 1 0.731662273406982 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131351104 chr9:131351096 synonymous SNV . 0 13 hm5C_associated_SNPs_8312 2 0 1 0 1 SPTAN1 chr9:131351088 3'AG 131351088 Downstream 9bp
chr9 131356538 131356538 1 + G A rs2227865 131356537 + 131356517 131356557 41 GTTTATGTTGTTCCGTGAAGCGAATGAACTACAGCAATGGA GTTTATGTTGTTCCGTGAAGCAAATGAACTACAGCAATGGA < 41bp 1 0.098875974835925 1 0.276121973991394 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131356537 chr9:131356538 synonymous SNV . 0 22 hm5C_associated_SNPs_8313 3 0 1 0 1 SPTAN1 chr9:131356454 3'AG 131356454 Downstream 85bp
chr9 131684572 131684572 1 + T C rs200538963 131684567 + 131684547 131684587 41 TCTCCTCCCCACCAGGAGGCCGCGCTTAGAAGCCGCCCAGT TCTCCTCCCCACCAGGAGGCCGCGCCTAGAAGCCGCCCAGT < 41bp 1 0.614272339368102 1 0.54628986120224 experiment 0.771455321263796 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHYHD1 ENSG00000175287 UTR5 Human protein_coding chr9:131684567 chr9:131684572 . . 0 26 hm5C_associated_SNPs_8322 0 0 0 0 1 PHYHD1 chr9:131684635 5'GT 131684635 Upstream 64bp
chr9 131684572 131684572 1 + T C rs200538963 131684580 + 131684560 131684600 41 AGGAGGCCGCGCTTAGAAGCCGCCCAGTGCCCTGAGCGTCT AGGAGGCCGCGCCTAGAAGCCGCCCAGTGCCCTGAGCGTCT < 41bp 1 0.523955313684222 1 0.282963246107101 experiment 0.952089372631557 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHYHD1 ENSG00000175287 UTR5 Human protein_coding chr9:131684580 chr9:131684572 . . 0 13 hm5C_associated_SNPs_8323 0 0 0 0 1 PHYHD1 chr9:131684635 5'GT 131684635 Upstream 64bp
chr9 131710017 131710017 1 + G A rs113241875 131710016 + 131709996 131710036 41 AAGATGGCGGCGGCCGCCGGCGGGCCGTGTGTGAGGTGCGG AAGATGGCGGCGGCCGCCGGCAGGCCGTGTGTGAGGTGCGG < 41bp 1 0.458199978855955 1 0.831292331218719 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUP188 ENSG00000095319 CDS Human protein_coding chr9:131710016 chr9:131710017 nonsynonymous SNV 0.939 0 22 hm5C_associated_SNPs_8324 1 0 1 0 1 NUP188 chr9:131710030 5'GT 131710030 Upstream 14bp
chr9 131710020 131710020 1 + C T rs550498774 131710016 + 131709996 131710036 41 AAGATGGCGGCGGCCGCCGGCGGGCCGTGTGTGAGGTGCGG AAGATGGCGGCGGCCGCCGGCGGGTCGTGTGTGAGGTGCGG < 41bp 1 0.594741290549529 1 0.894014835357666 experiment 0.810517418900942 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUP188 ENSG00000095319 CDS Human protein_coding chr9:131710016 chr9:131710020 nonsynonymous SNV 0.913 0 25 hm5C_associated_SNPs_8325 0 0 1 0 1 NUP188 chr9:131710030 5'GT 131710030 Upstream 11bp
chr9 131730813 131730813 1 + T C rs17507971 131730830 + 131730810 131730850 41 TTGTTCAGTGCCTTCGGGAACAGTCCATGCTGCTAGAAATT TTGCTCAGTGCCTTCGGGAACAGTCCATGCTGCTAGAAATT < 41bp 1 0.0472425319106214 1 0.285892575979233 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUP188 ENSG00000095319 CDS Human protein_coding chr9:131730830 chr9:131730813 nonsynonymous SNV 1.000 0 4 hm5C_associated_SNPs_8326 0 0 1 0 1 NUP188 chr9:131730785 3'AG 131730785 Downstream 29bp
chr9 131767727 131767727 1 + A G rs144651672 131767731 + 131767711 131767751 41 TTGCACACAGTCCAGTATGGCCTTCTCAAGATCCTCAGCAA TTGCACACAGTCCAGTGTGGCCTTCTCAAGATCCTCAGCAA < 41bp 1 0.0143796970606485 1 0.0393083095550537 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUP188 ENSG00000095319 CDS Human protein_coding chr9:131767731 chr9:131767727 nonsynonymous SNV 0.947 1 17 hm5C_associated_SNPs_8327 0 0 1 0 1 NUP188 chr9:131767809 5'GT 131767809 Upstream 83bp
chr9 131830567 131830567 1 + G A rs28365557 131830576 + 131830556 131830596 41 CCTCGGTGCTCGCCGTCCTGCGGAACCGCTGGCTGTCAGAC CCTCGGTGCTCACCGTCCTGCGGAACCGCTGGCTGTCAGAC < 41bp 1 0.63865139802899 1 0.581357479095459 experiment 0.722697203942021 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830576 chr9:131830567 nonsynonymous SNV 0.941 3 12 hm5C_associated_SNPs_8328 0 0 1 0 2 MIGA2 chr9:131830477 3'AG 131830477 Downstream 91bp
chr9 131830567 131830567 1 + G A rs28365557 131830576 + 131830556 131830596 41 CCTCGGTGCTCGCCGTCCTGCGGAACCGCTGGCTGTCAGAC CCTCGGTGCTCACCGTCCTGCGGAACCGCTGGCTGTCAGAC < 41bp 1 0.63865139802899 1 0.581357479095459 experiment 0.722697203942021 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830576 chr9:131830567 nonsynonymous SNV 0.941 3 12 hm5C_associated_SNPs_8328 0 0 1 0 2 MIGA2 chr9:131830611 5'GT 131830611 Upstream 45bp
chr9 131830577 131830577 1 + G A rs566373660 131830576 + 131830556 131830596 41 CCTCGGTGCTCGCCGTCCTGCGGAACCGCTGGCTGTCAGAC CCTCGGTGCTCGCCGTCCTGCAGAACCGCTGGCTGTCAGAC < 41bp 1 0.652766681783549 1 0.495454281568527 experiment 0.694466636432903 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830576 chr9:131830577 nonsynonymous SNV 0.991 3 22 hm5C_associated_SNPs_8329 0 0 1 0 1 MIGA2 chr9:131830611 5'GT 131830611 Upstream 35bp
chr9 131846993 131846993 1 + A G rs17485947 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTCAGCCCTGTGTTTGTCATCGTCGGTTTCGTGACCCT < 41bp 1 0.516703760665008 1 0.260140657424927 experiment 0.966592478669984 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131846993 synonymous SNV . 0 15 hm5C_associated_SNPs_8330 0 0 1 0 2 DOLPP1 chr9:131846947 3'AG 131846947 Downstream 47bp
chr9 131846993 131846993 1 + A G rs17485947 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTCAGCCCTGTGTTTGTCATCGTCGGTTTCGTGACCCT < 41bp 1 0.516703760665008 1 0.260140657424927 experiment 0.966592478669984 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131846993 synonymous SNV . 0 15 hm5C_associated_SNPs_8330 0 0 1 0 2 DOLPP1 chr9:131847047 5'GT 131847047 Upstream 55bp
chr9 132265852 132265852 1 + C T rs551606978 132265871 + 132265851 132265891 41 CCATTCCTCATGCAGGCCATCGATGGAAATGTCAGACAGTG CTATTCCTCATGCAGGCCATCGATGGAAATGTCAGACAGTG < 41bp 1 0.295859844306406 1 0.628778755664825 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control LINC00963 ENSG00000204054 ncRNA_exonic Human processed_transcript chr9:132265871 chr9:132265852 . . 0 2 hm5C_associated_SNPs_8333 0 0 1 0 1 LINC00963 chr9:132265951 5'GT 132265951 Upstream 100bp
chr9 132265860 132265860 1 + A G rs368153196 132265871 + 132265851 132265891 41 CCATTCCTCATGCAGGCCATCGATGGAAATGTCAGACAGTG CCATTCCTCGTGCAGGCCATCGATGGAAATGTCAGACAGTG < 41bp 1 0.347043714543663 1 0.622183203697205 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control LINC00963 ENSG00000204054 ncRNA_exonic Human processed_transcript chr9:132265871 chr9:132265860 . . 0 10 hm5C_associated_SNPs_8334 0 0 1 0 1 LINC00963 chr9:132265951 5'GT 132265951 Upstream 92bp
chr9 132267193 132267193 1 + C T rs192105959 132267174 + 132267154 132267194 41 TTCCTGCTCTCCCACAGTGGCACCCGAGCTCTGTGAGGGCA TTCCTGCTCTCCCACAGTGGCACCCGAGCTCTGTGAGGGTA < 41bp 1 0.0953553624455111 1 0.157736003398895 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LINC00963 ENSG00000204054 ncRNA_exonic Human processed_transcript chr9:132267174 chr9:132267193 . . 0 40 hm5C_associated_SNPs_8335 0 0 1 0 1 LINC00963 chr9:132267171 3'AG 132267171 Downstream 23bp
chr9 132482960 132482960 1 + A G rs567572265 132482973 + 132482953 132482993 41 AAGTCCTACAGCCAGGAGGCCGCCATCGAGCAGCCCGTGGC AAGTCCTGCAGCCAGGAGGCCGCCATCGAGCAGCCCGTGGC < 41bp 1 0.688253500408729 1 0.495107024908066 experiment 0.623492999182541 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRX2 ENSG00000167157 CDS Human protein_coding chr9:132482973 chr9:132482960 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_8336 0 0 0 0 2 PRRX2 chr9:132482875 3'AG 132482875 Downstream 86bp
chr9 132482960 132482960 1 + A G rs567572265 132482973 + 132482953 132482993 41 AAGTCCTACAGCCAGGAGGCCGCCATCGAGCAGCCCGTGGC AAGTCCTGCAGCCAGGAGGCCGCCATCGAGCAGCCCGTGGC < 41bp 1 0.688253500408729 1 0.495107024908066 experiment 0.623492999182541 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRX2 ENSG00000167157 CDS Human protein_coding chr9:132482973 chr9:132482960 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_8336 0 0 0 0 2 PRRX2 chr9:132483053 5'GT 132483053 Upstream 94bp
chr9 132618599 132618599 1 + C T rs181271773 132618609 + 132618589 132618629 41 ACCTGTCAGTCGTGTGGGGTCACCGGACCAAACCTATGGGC ACCTGTCAGTTGTGTGGGGTCACCGGACCAAACCTATGGGC < 41bp 1 0.64746681776607 1 0.378922581672668 experiment 0.70506636446786 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control USP20 ENSG00000136878 CDS Human protein_coding chr9:132618609 chr9:132618599 nonsynonymous SNV 0.714 2 11 hm5C_associated_SNPs_8337 0 0 1 0 2 USP20 chr9:132618586 3'AG 132618586 Downstream 14bp
chr9 132618599 132618599 1 + C T rs181271773 132618609 + 132618589 132618629 41 ACCTGTCAGTCGTGTGGGGTCACCGGACCAAACCTATGGGC ACCTGTCAGTTGTGTGGGGTCACCGGACCAAACCTATGGGC < 41bp 1 0.64746681776607 1 0.378922581672668 experiment 0.70506636446786 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control USP20 ENSG00000136878 CDS Human protein_coding chr9:132618609 chr9:132618599 nonsynonymous SNV 0.714 2 11 hm5C_associated_SNPs_8337 0 0 1 0 2 USP20 chr9:132618639 5'GT 132618639 Upstream 41bp
chr9 133511426 133511426 1 + G A rs141995643 133511425 + 133511405 133511445 41 TCCTCAGGCCAGCTCCCCACCGGACTACACAATGGCCTGGG TCCTCAGGCCAGCTCCCCACCAGACTACACAATGGCCTGGG < 41bp 1 0.650865066884322 1 0.681458473205566 experiment 0.698269866231356 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133511425 chr9:133511426 synonymous SNV . 0 22 hm5C_associated_SNPs_8348 0 0 1 0 2 FUBP3 chr9:133511386 3'AG 133511386 Downstream 41bp
chr9 133511426 133511426 1 + G A rs141995643 133511425 + 133511405 133511445 41 TCCTCAGGCCAGCTCCCCACCGGACTACACAATGGCCTGGG TCCTCAGGCCAGCTCCCCACCAGACTACACAATGGCCTGGG < 41bp 1 0.650865066884322 1 0.681458473205566 experiment 0.698269866231356 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133511425 chr9:133511426 synonymous SNV . 0 22 hm5C_associated_SNPs_8348 0 0 1 0 2 FUBP3 chr9:133511513 5'GT 133511513 Upstream 88bp
chr9 134026024 134026024 1 + T C rs75412063 134026009 + 134025989 134026029 41 TGTGGCTTCTACAGATTGCACACTTTCAGAAGGAGTTGGAA TGTGGCTTCTACAGATTGCACACTTTCAGAAGGAGCTGGAA < 41bp 1 0.110703534270033 1 0.0532021522521973 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NUP214 ENSG00000126883 CDS Human protein_coding chr9:134026009 chr9:134026024 synonymous SNV . 0 36 hm5C_associated_SNPs_8358 0 0 1 0 1 NUP214 chr9:134026003 3'AG 134026003 Downstream 22bp
chr9 135919225 135919225 1 + C A rs150056568 135919215 + 135919195 135919235 41 CTCCGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC CTCCGGCCCGAGAAGGAGGCCTTTTTCCACAAGGAGCTGCC < 41bp 1 0.0471820134877633 1 0.0343334376811981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919215 chr9:135919225 nonsynonymous SNV 0.998 1 31 hm5C_associated_SNPs_8363 0 0 1 0 1 GTF3C5 chr9:135919313 5'GT 135919313 Upstream 89bp
chr9 135926262 135926262 1 + A C rs573684000 135926282 + 135926262 135926302 41 AGGATGAGGAGGTGCCCAAGCAGCCACTGGAGGCTGCAGCC CGGATGAGGAGGTGCCCAAGCAGCCACTGGAGGCTGCAGCC < 41bp 1 0.649441920388286 1 0.548700869083405 experiment 0.701116159223429 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135926282 chr9:135926262 nonsynonymous SNV 0.946 0 1 hm5C_associated_SNPs_8364 0 0 1 0 1 GTF3C5 chr9:135926170 3'AG 135926170 Downstream 93bp
chr9 136216882 136216882 1 + G A rs7700 136216873 + 136216853 136216893 41 AAGGCTGCTGGCAAAGGGGACGTCCCAACGAAGAGACCACC AAGGCTGCTGGCAAAGGGGACGTCCCAACAAAGAGACCACC < 41bp 1 0.118968629328322 1 0.38500314950943 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216873 chr9:136216882 synonymous SNV . 0 30 hm5C_associated_SNPs_8421 0 0 1 0 1 RPL7A chr9:136216907 5'GT 136216907 Upstream 26bp
chr9 136216882 136216882 1 + G A rs7700 136216877 + 136216857 136216897 41 CTGCTGGCAAAGGGGACGTCCCAACGAAGAGACCACCTGTC CTGCTGGCAAAGGGGACGTCCCAACAAAGAGACCACCTGTC < 41bp 1 0.11872207491589 1 0.0730959177017212 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216877 chr9:136216882 synonymous SNV . 0 26 hm5C_associated_SNPs_8422 0 0 1 0 1 RPL7A chr9:136216907 5'GT 136216907 Upstream 26bp
chr9 136216882 136216882 1 + G A rs7700 136216881 + 136216861 136216901 41 TGGCAAAGGGGACGTCCCAACGAAGAGACCACCTGTCCTTC TGGCAAAGGGGACGTCCCAACAAAGAGACCACCTGTCCTTC < 41bp 1 0.789531126837316 1 0.787772178649902 experiment 0.420937746325367 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216881 chr9:136216882 synonymous SNV . 0 22 hm5C_associated_SNPs_8423 0 0 1 0 1 RPL7A chr9:136216907 5'GT 136216907 Upstream 26bp
chr9 137001224 137001224 1 + G C rs531170907 137001222 + 137001202 137001242 41 GCGCCCCCGCCGCCTGGCGCCCGCCCGAGCTGCCGCCTTGT GCGCCCCCGCCGCCTGGCGCCCCCCCGAGCTGCCGCCTTGT < 41bp 1 0.170027142309974 1 0.0345216691493988 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR5 ENSG00000196363 UTR5 Human protein_coding chr9:137001222 chr9:137001224 . . 0 23 hm5C_associated_SNPs_8435 0 0 0 0 1 WDR5 chr9:137001322 5'GT 137001322 Upstream 99bp
chr9 137001224 137001224 1 + G C rs531170907 137001227 + 137001207 137001247 41 CCCGCCGCCTGGCGCCCGCCCGAGCTGCCGCCTTGTCGAGC CCCGCCGCCTGGCGCCCCCCCGAGCTGCCGCCTTGTCGAGC < 41bp 1 0.6804024803166 1 0.339093446731567 experiment 0.6391950393668 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR5 ENSG00000196363 UTR5 Human protein_coding chr9:137001227 chr9:137001224 . . 0 18 hm5C_associated_SNPs_8436 0 0 0 0 1 WDR5 chr9:137001322 5'GT 137001322 Upstream 99bp
chr9 137004956 137004956 1 + C G rs189773125 137004936 + 137004916 137004956 41 TCCCTGTTCTGCATCTCGCTCAACAGACTGCCTCTGTCACC TCCCTGTTCTGCATCTCGCTCAACAGACTGCCTCTGTCACG < 41bp 1 0.298861638981883 1 0.285080999135971 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR5 ENSG00000196363 UTR5 Human protein_coding chr9:137004936 chr9:137004956 . . 0 41 hm5C_associated_SNPs_8437 0 0 1 0 1 WDR5 chr9:137004942 3'AG 137004942 Downstream 15bp
chr9 137004956 137004956 1 + C G rs189773125 137004939 + 137004919 137004959 41 CTGTTCTGCATCTCGCTCAACAGACTGCCTCTGTCACCGGG CTGTTCTGCATCTCGCTCAACAGACTGCCTCTGTCACGGGG < 41bp 1 0.0858070036284431 1 0.68273663520813 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR5 ENSG00000196363 UTR5 Human protein_coding chr9:137004939 chr9:137004956 . . 0 38 hm5C_associated_SNPs_8438 0 0 1 0 1 WDR5 chr9:137004942 3'AG 137004942 Downstream 15bp
chr9 137323820 137323820 1 + C G rs141382843 137323830 + 137323810 137323850 41 GCTGCCTGCGCGCCATCGTCCTCTTTAACCCTGGTATGGCC GCTGCCTGCGGGCCATCGTCCTCTTTAACCCTGGTATGGCC < 41bp 1 0.113326157204103 1 0.316991686820984 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RXRA ENSG00000186350 CDS Human protein_coding chr9:137323830 chr9:137323820 synonymous SNV . 0 11 hm5C_associated_SNPs_8442 0 0 1 0 1 RXRA chr9:137323842 5'GT 137323842 Upstream 23bp
chr9 137593098 137593098 1 + C T rs116715381 137593086 + 137593066 137593106 41 CTCGACTGTAAAAAGAAGACCACCAAATTCCTCGACCGCAG CTCGACTGTAAAAAGAAGACCACCAAATTCCTTGACCGCAG < 41bp 1 0.345742565300989 1 0.272157967090607 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137593086 chr9:137593098 synonymous SNV . 0 33 hm5C_associated_SNPs_8447 4 0 1 0 2 COL5A1 chr9:137593017 3'AG 137593017 Downstream 82bp
chr9 137593098 137593098 1 + C T rs116715381 137593086 + 137593066 137593106 41 CTCGACTGTAAAAAGAAGACCACCAAATTCCTCGACCGCAG CTCGACTGTAAAAAGAAGACCACCAAATTCCTTGACCGCAG < 41bp 1 0.345742565300989 1 0.272157967090607 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137593086 chr9:137593098 synonymous SNV . 0 33 hm5C_associated_SNPs_8447 4 0 1 0 2 COL5A1 chr9:137593179 5'GT 137593179 Upstream 82bp
chr9 137593099 137593099 1 + G A rs138579182 137593086 + 137593066 137593106 41 CTCGACTGTAAAAAGAAGACCACCAAATTCCTCGACCGCAG CTCGACTGTAAAAAGAAGACCACCAAATTCCTCAACCGCAG < 41bp 1 0.303220987650922 1 0.17741185426712 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137593086 chr9:137593099 nonsynonymous SNV 0.112 0 34 hm5C_associated_SNPs_8448 3 0 1 0 2 COL5A1 chr9:137593017 3'AG 137593017 Downstream 83bp
chr9 137593099 137593099 1 + G A rs138579182 137593086 + 137593066 137593106 41 CTCGACTGTAAAAAGAAGACCACCAAATTCCTCGACCGCAG CTCGACTGTAAAAAGAAGACCACCAAATTCCTCAACCGCAG < 41bp 1 0.303220987650922 1 0.17741185426712 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137593086 chr9:137593099 nonsynonymous SNV 0.112 0 34 hm5C_associated_SNPs_8448 3 0 1 0 2 COL5A1 chr9:137593179 5'GT 137593179 Upstream 81bp
chr9 138662895 138662895 1 + C T rs141759469 138662890 + 138662870 138662910 41 GGGCCTTCTCGGGGCAGGGGCTGCACGAGGGTCCGGCCCGC GGGCCTTCTCGGGGCAGGGGCTGCATGAGGGTCCGGCCCGC < 41bp 1 0.77506077080658 1 0.841352224349976 experiment 0.449878458386839 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control KCNT1 ENSG00000107147 CDS Human protein_coding chr9:138662890 chr9:138662895 synonymous SNV . 0 26 hm5C_associated_SNPs_8468 0 0 0 0 1 KCNT1 chr9:138662941 5'GT 138662941 Upstream 47bp
chr9 139228931 139228931 1 + G A rs146709689 139228915 + 139228895 139228935 41 TCTGCACAGGATGGAGGCGTCCTGCCTAGAGCTGGCGCTGG TCTGCACAGGATGGAGGCGTCCTGCCTAGAGCTGGCACTGG < 41bp 1 0.141034436755298 1 0.0588949620723724 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139228915 chr9:139228931 synonymous SNV . 0 37 hm5C_associated_SNPs_8469 0 0 1 0 1 GPSM1 chr9:139228904 3'AG 139228904 Downstream 28bp
chr9 139228931 139228931 1 + G A rs146709689 139228916 + 139228896 139228936 41 CTGCACAGGATGGAGGCGTCCTGCCTAGAGCTGGCGCTGGA CTGCACAGGATGGAGGCGTCCTGCCTAGAGCTGGCACTGGA < 41bp 1 0.4466105931923 1 0.108124136924744 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139228916 chr9:139228931 synonymous SNV . 0 36 hm5C_associated_SNPs_8470 0 0 1 0 1 GPSM1 chr9:139228904 3'AG 139228904 Downstream 28bp
chr9 139234206 139234206 1 + C T rs141313816 139234211 + 139234191 139234231 41 CCTGGGAAATGCCTACGTGTCCATGGGGCGCCCAGCGCAGG CCTGGGAAATGCCTATGTGTCCATGGGGCGCCCAGCGCAGG < 41bp 1 0.265236598217137 1 0.179475367069244 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139234211 chr9:139234206 synonymous SNV . 0 16 hm5C_associated_SNPs_8471 0 0 1 0 1 GPSM1 chr9:139234272 5'GT 139234272 Upstream 67bp
chr9 139234206 139234206 1 + C T rs141313816 139234212 + 139234192 139234232 41 CTGGGAAATGCCTACGTGTCCATGGGGCGCCCAGCGCAGGC CTGGGAAATGCCTATGTGTCCATGGGGCGCCCAGCGCAGGC < 41bp 1 0.699713171237181 1 0.391796946525574 experiment 0.600573657525638 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139234212 chr9:139234206 synonymous SNV . 0 15 hm5C_associated_SNPs_8472 0 0 1 0 1 GPSM1 chr9:139234272 5'GT 139234272 Upstream 67bp
chr9 139730246 139730246 1 + C T rs550622599 139730261 + 139730241 139730281 41 CGCCACGCTGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGG CGCCATGCTGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGG < 41bp 1 0.545397845258683 1 0.850019097328186 experiment 0.909204309482635 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139730261 chr9:139730246 nonsynonymous SNV 0.957 4 6 hm5C_associated_SNPs_8487 0 0 1 0 2 RABL6 chr9:139730194 3'AG 139730194 Downstream 53bp
chr9 139730246 139730246 1 + C T rs550622599 139730261 + 139730241 139730281 41 CGCCACGCTGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGG CGCCATGCTGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGG < 41bp 1 0.545397845258683 1 0.850019097328186 experiment 0.909204309482635 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139730261 chr9:139730246 nonsynonymous SNV 0.957 4 6 hm5C_associated_SNPs_8487 0 0 1 0 2 RABL6 chr9:139730297 5'GT 139730297 Upstream 52bp
chr9 139733481 139733481 1 + C A rs191514627 139733467 + 139733447 139733487 41 CGCTGCCTGCAGGCCCCGTCCCCAGTCAAGACATCACTCTT CGCTGCCTGCAGGCCCCGTCCCCAGTCAAGACATAACTCTT < 41bp 1 0.158982415831889 1 0.625841736793518 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139733467 chr9:139733481 synonymous SNV . 0 35 hm5C_associated_SNPs_8489 0 0 1 0 1 RABL6 chr9:139733573 5'GT 139733573 Upstream 93bp
chr9 139734272 139734272 1 + G A rs147124725 139734259 + 139734239 139734279 41 GCCTTCAGACTGAAGAATGACTCGGACCTCTTCGGGCTGGG GCCTTCAGACTGAAGAATGACTCGGACCTCTTCAGGCTGGG < 41bp 1 0.650525626709088 1 0.60437148809433 experiment 0.698948746581824 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734259 chr9:139734272 nonsynonymous SNV 0.037 4 34 hm5C_associated_SNPs_8490 0 0 1 0 1 RABL6 chr9:139734317 5'GT 139734317 Upstream 46bp
chr9 139734272 139734272 1 + G A rs147124725 139734265 + 139734245 139734285 41 AGACTGAAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGA AGACTGAAGAATGACTCGGACCTCTTCAGGCTGGGGCTGGA < 41bp 1 0.0493488430403426 1 0.0502026379108429 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734265 chr9:139734272 nonsynonymous SNV 0.037 4 28 hm5C_associated_SNPs_8491 0 0 1 0 1 RABL6 chr9:139734317 5'GT 139734317 Upstream 46bp
chr9 139734272 139734272 1 + G A rs147124725 139734266 + 139734246 139734286 41 GACTGAAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGAG GACTGAAGAATGACTCGGACCTCTTCAGGCTGGGGCTGGAG < 41bp 1 0.105588589555133 1 0.107418358325958 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734266 chr9:139734272 nonsynonymous SNV 0.037 4 27 hm5C_associated_SNPs_8492 0 0 1 0 1 RABL6 chr9:139734317 5'GT 139734317 Upstream 46bp
chr9 139734272 139734272 1 + G A rs147124725 139734271 + 139734251 139734291 41 AAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGAGGAGGC AAGAATGACTCGGACCTCTTCAGGCTGGGGCTGGAGGAGGC < 41bp 1 0.649013133019413 1 0.801381826400757 experiment 0.701973733961174 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734271 chr9:139734272 nonsynonymous SNV 0.037 4 22 hm5C_associated_SNPs_8493 0 0 1 0 1 RABL6 chr9:139734317 5'GT 139734317 Upstream 46bp
chr9 139734272 139734272 1 + G A rs147124725 139734292 + 139734272 139734312 41 GGGCTGGGGCTGGAGGAGGCCGGACCCAAGGAGAGCAGTGA AGGCTGGGGCTGGAGGAGGCCGGACCCAAGGAGAGCAGTGA < 41bp 1 0.218277131701349 1 0.739238500595093 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734292 chr9:139734272 nonsynonymous SNV 0.037 4 1 hm5C_associated_SNPs_8494 0 0 1 0 1 RABL6 chr9:139734317 5'GT 139734317 Upstream 46bp
chr9 139747570 139747570 1 + G A rs145912281 139747567 + 139747547 139747587 41 CCAGCAGCAGGGTCCTCAGGCTGGGCCTGGGTCCCCAACCA CCAGCAGCAGGGTCCTCAGGCTGAGCCTGGGTCCCCAACCA < 41bp 1 0.550085108537621 1 0.606786131858826 experiment 0.899829782924757 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139747567 chr9:139747570 stopgain 0.614 0 24 hm5C_associated_SNPs_8495 0 0 1 0 2 MAMDC4 chr9:139747554 3'AG 139747554 Downstream 17bp
chr9 139747570 139747570 1 + G A rs145912281 139747567 + 139747547 139747587 41 CCAGCAGCAGGGTCCTCAGGCTGGGCCTGGGTCCCCAACCA CCAGCAGCAGGGTCCTCAGGCTGAGCCTGGGTCCCCAACCA < 41bp 1 0.550085108537621 1 0.606786131858826 experiment 0.899829782924757 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139747567 chr9:139747570 stopgain 0.614 0 24 hm5C_associated_SNPs_8495 0 0 1 0 2 MAMDC4 chr9:139747661 5'GT 139747661 Upstream 92bp
chr9 139747571 139747571 1 + G T rs147821303 139747567 + 139747547 139747587 41 CCAGCAGCAGGGTCCTCAGGCTGGGCCTGGGTCCCCAACCA CCAGCAGCAGGGTCCTCAGGCTGGTCCTGGGTCCCCAACCA < 41bp 1 0.584946161832458 1 0.470835328102112 experiment 0.830107676335085 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139747567 chr9:139747571 nonsynonymous SNV 0.664 0 25 hm5C_associated_SNPs_8496 0 0 1 0 2 MAMDC4 chr9:139747554 3'AG 139747554 Downstream 18bp
chr9 139747571 139747571 1 + G T rs147821303 139747567 + 139747547 139747587 41 CCAGCAGCAGGGTCCTCAGGCTGGGCCTGGGTCCCCAACCA CCAGCAGCAGGGTCCTCAGGCTGGTCCTGGGTCCCCAACCA < 41bp 1 0.584946161832458 1 0.470835328102112 experiment 0.830107676335085 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139747567 chr9:139747571 nonsynonymous SNV 0.664 0 25 hm5C_associated_SNPs_8496 0 0 1 0 2 MAMDC4 chr9:139747661 5'GT 139747661 Upstream 91bp
chr9 139848688 139848688 1 + C A rs4880175 139848675 + 139848655 139848695 41 GGGCAGAGCTCAGGGCCTCTCGGATGACAACATCGTCTTCC GGGCAGAGCTCAGGGCCTCTCGGATGACAACATAGTCTTCC < 41bp 1 0.732609086511002 1 0.852681875228882 experiment 0.534781826977995 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control LCN12 ENSG00000184925 CDS Human protein_coding chr9:139848675 chr9:139848688 stopgain 0.003 0 34 hm5C_associated_SNPs_8497 0 0 0 0 2 LCN12 chr9:139848606 3'AG 139848606 Downstream 83bp
chr9 139848688 139848688 1 + C A rs4880175 139848675 + 139848655 139848695 41 GGGCAGAGCTCAGGGCCTCTCGGATGACAACATCGTCTTCC GGGCAGAGCTCAGGGCCTCTCGGATGACAACATAGTCTTCC < 41bp 1 0.732609086511002 1 0.852681875228882 experiment 0.534781826977995 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control LCN12 ENSG00000184925 CDS Human protein_coding chr9:139848675 chr9:139848688 stopgain 0.003 0 34 hm5C_associated_SNPs_8497 0 0 0 0 2 LCN12 chr9:139848707 5'GT 139848707 Upstream 20bp
chr9 139887666 139887666 1 + G A rs555806618 139887676 + 139887656 139887696 41 CTGGCAAAACGCGTGTGGAGCCTGGAGCGGCGACTGGCAGG CTGGCAAAACACGTGTGGAGCCTGGAGCGGCGACTGGCAGG < 41bp 1 0.343937245677135 1 0.112923562526703 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887676 chr9:139887666 nonsynonymous SNV 0.031 0 11 hm5C_associated_SNPs_8498 0 0 1 0 1 C9orf142 chr9:139887695 5'GT 139887695 Upstream 30bp
chr9 139887667 139887667 1 + C T rs151088980 139887676 + 139887656 139887696 41 CTGGCAAAACGCGTGTGGAGCCTGGAGCGGCGACTGGCAGG CTGGCAAAACGTGTGTGGAGCCTGGAGCGGCGACTGGCAGG < 41bp 1 0.32263503577652 1 0.235451877117157 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887676 chr9:139887667 synonymous SNV . 0 12 hm5C_associated_SNPs_8499 0 0 1 0 1 C9orf142 chr9:139887695 5'GT 139887695 Upstream 29bp
chr9 139887803 139887803 1 + G C rs141325653 139887795 + 139887775 139887815 41 CCATGGGCTTTCCTCCCCAGCTGCAGAAGAGACAGCTGTCA CCATGGGCTTTCCTCCCCAGCTGCAGAACAGACAGCTGTCA < 41bp 1 0.669528583045454 1 0.491174846887589 experiment 0.660942833909092 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887795 chr9:139887803 nonsynonymous SNV 0.151 0 29 hm5C_associated_SNPs_8500 0 0 1 0 2 C9orf142 chr9:139887795 3'AG 139887795 Downstream 9bp
chr9 139887803 139887803 1 + G C rs141325653 139887795 + 139887775 139887815 41 CCATGGGCTTTCCTCCCCAGCTGCAGAAGAGACAGCTGTCA CCATGGGCTTTCCTCCCCAGCTGCAGAACAGACAGCTGTCA < 41bp 1 0.669528583045454 1 0.491174846887589 experiment 0.660942833909092 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887795 chr9:139887803 nonsynonymous SNV 0.151 0 29 hm5C_associated_SNPs_8500 0 0 1 0 2 C9orf142 chr9:139887863 5'GT 139887863 Upstream 61bp
chr9 139887803 139887803 1 + G C rs141325653 139887798 + 139887778 139887818 41 TGGGCTTTCCTCCCCAGCTGCAGAAGAGACAGCTGTCAGCC TGGGCTTTCCTCCCCAGCTGCAGAACAGACAGCTGTCAGCC < 41bp 1 0.644249745843037 1 0.762189388275146 experiment 0.711500508313926 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887798 chr9:139887803 nonsynonymous SNV 0.151 0 26 hm5C_associated_SNPs_8501 0 0 1 0 2 C9orf142 chr9:139887795 3'AG 139887795 Downstream 9bp
chr9 139887803 139887803 1 + G C rs141325653 139887798 + 139887778 139887818 41 TGGGCTTTCCTCCCCAGCTGCAGAAGAGACAGCTGTCAGCC TGGGCTTTCCTCCCCAGCTGCAGAACAGACAGCTGTCAGCC < 41bp 1 0.644249745843037 1 0.762189388275146 experiment 0.711500508313926 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887798 chr9:139887803 nonsynonymous SNV 0.151 0 26 hm5C_associated_SNPs_8501 0 0 1 0 2 C9orf142 chr9:139887863 5'GT 139887863 Upstream 61bp
chr9 139887803 139887803 1 + G C rs141325653 139887814 + 139887794 139887834 41 GCTGCAGAAGAGACAGCTGTCAGCCCGAGGAAGAGCCCCCG GCTGCAGAACAGACAGCTGTCAGCCCGAGGAAGAGCCCCCG < 41bp 1 0.482148086200247 1 0.620062053203583 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887814 chr9:139887803 nonsynonymous SNV 0.151 0 10 hm5C_associated_SNPs_8502 0 0 1 0 2 C9orf142 chr9:139887795 3'AG 139887795 Downstream 9bp
chr9 139887803 139887803 1 + G C rs141325653 139887814 + 139887794 139887834 41 GCTGCAGAAGAGACAGCTGTCAGCCCGAGGAAGAGCCCCCG GCTGCAGAACAGACAGCTGTCAGCCCGAGGAAGAGCCCCCG < 41bp 1 0.482148086200247 1 0.620062053203583 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887814 chr9:139887803 nonsynonymous SNV 0.151 0 10 hm5C_associated_SNPs_8502 0 0 1 0 2 C9orf142 chr9:139887863 5'GT 139887863 Upstream 61bp
chr9 139887833 139887833 1 + C T rs566004185 139887814 + 139887794 139887834 41 GCTGCAGAAGAGACAGCTGTCAGCCCGAGGAAGAGCCCCCG GCTGCAGAAGAGACAGCTGTCAGCCCGAGGAAGAGCCCCTG < 41bp 1 0.529477886614955 1 0.769457876682281 experiment 0.94104422677009 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887814 chr9:139887833 nonsynonymous SNV 0.000 1 40 hm5C_associated_SNPs_8503 0 0 1 0 2 C9orf142 chr9:139887795 3'AG 139887795 Downstream 39bp
chr9 139887833 139887833 1 + C T rs566004185 139887814 + 139887794 139887834 41 GCTGCAGAAGAGACAGCTGTCAGCCCGAGGAAGAGCCCCCG GCTGCAGAAGAGACAGCTGTCAGCCCGAGGAAGAGCCCCTG < 41bp 1 0.529477886614955 1 0.769457876682281 experiment 0.94104422677009 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887814 chr9:139887833 nonsynonymous SNV 0.000 1 40 hm5C_associated_SNPs_8503 0 0 1 0 2 C9orf142 chr9:139887863 5'GT 139887863 Upstream 31bp
chr9 139975195 139975195 1 + C T rs41302685 139975202 + 139975182 139975222 41 CCCCACTGAAGAACGCAGAGCCAGCCGACAGGGACAGTCCC CCCCACTGAAGAATGCAGAGCCAGCCGACAGGGACAGTCCC < 41bp 1 0.0774450287308058 1 0.580168187618256 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139975202 chr9:139975195 synonymous SNV . 0 14 hm5C_associated_SNPs_8504 0 0 1 0 1 UAP1L1 chr9:139975141 3'AG 139975141 Downstream 55bp
chr9 139975195 139975195 1 + C T rs41302685 139975203 + 139975183 139975223 41 CCCACTGAAGAACGCAGAGCCAGCCGACAGGGACAGTCCCC CCCACTGAAGAATGCAGAGCCAGCCGACAGGGACAGTCCCC < 41bp 1 0.368554187185637 1 0.445291966199875 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139975203 chr9:139975195 synonymous SNV . 0 13 hm5C_associated_SNPs_8505 0 0 1 0 1 UAP1L1 chr9:139975141 3'AG 139975141 Downstream 55bp
chr9 140100302 140100302 1 + G A rs367940263 140100319 + 140100299 140100339 41 CTGGGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGT CTGAGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGT < 41bp 1 0.376161847496563 1 0.550494015216827 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100319 chr9:140100302 nonsynonymous SNV 0.997 1 4 hm5C_associated_SNPs_8510 0 0 1 0 1 NDOR1 chr9:140100364 5'GT 140100364 Upstream 63bp
chr9 140100302 140100302 1 + G A rs367940263 140100320 + 140100300 140100340 41 TGGGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGTG TGAGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGTG < 41bp 1 0.704982278203627 1 0.847855389118195 experiment 0.590035443592746 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100320 chr9:140100302 nonsynonymous SNV 0.997 1 3 hm5C_associated_SNPs_8511 0 0 1 0 1 NDOR1 chr9:140100364 5'GT 140100364 Upstream 63bp
chr9 140100317 140100317 1 + C G rs113809617 140100319 + 140100299 140100339 41 CTGGGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGT CTGGGTCGCGAGGCCCGGGGCCGGCGGCTTGGCTGCCGGGT < 41bp 1 0.34213196453748 1 0.569193601608276 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100319 chr9:140100317 nonsynonymous SNV 0.977 1 19 hm5C_associated_SNPs_8512 0 1 0 0 1 NDOR1 chr9:140100364 5'GT 140100364 Upstream 48bp
chr9 140100317 140100317 1 + C G rs113809617 140100320 + 140100300 140100340 41 TGGGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGTG TGGGTCGCGAGGCCCGGGGCCGGCGGCTTGGCTGCCGGGTG < 41bp 1 0.717482530830635 1 0.83339387178421 experiment 0.56503493833873 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100320 chr9:140100317 nonsynonymous SNV 0.977 1 18 hm5C_associated_SNPs_8513 0 1 0 0 1 NDOR1 chr9:140100364 5'GT 140100364 Upstream 48bp
chr9 140100317 140100317 1 + C G rs113809617 140100331 + 140100311 140100351 41 GCCCGGCGCCGGCGGCTTGGCTGCCGGGTGCAGGCCCTGGA GCCCGGGGCCGGCGGCTTGGCTGCCGGGTGCAGGCCCTGGA < 41bp 1 0.662352781336888 1 0.532456636428833 experiment 0.675294437326225 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100331 chr9:140100317 nonsynonymous SNV 0.977 1 7 hm5C_associated_SNPs_8514 0 1 0 0 1 NDOR1 chr9:140100364 5'GT 140100364 Upstream 48bp
chr9 140110238 140110238 1 + T C rs76182525 140110226 + 140110206 140110246 41 GTAGCCCCCTTCCGAGCAGCCATCCAGGAGCGTGTGGCCCA GTAGCCCCCTTCCGAGCAGCCATCCAGGAGCGCGTGGCCCA < 41bp 1 0.135177008020036 1 0.0520917475223541 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110226 chr9:140110238 synonymous SNV . 0 33 hm5C_associated_SNPs_8515 0 0 1 0 1 NDOR1 chr9:140110257 5'GT 140110257 Upstream 20bp
chr9 140110238 140110238 1 + T C rs76182525 140110236 + 140110216 140110256 41 TCCGAGCAGCCATCCAGGAGCGTGTGGCCCAGGGCCAGACT TCCGAGCAGCCATCCAGGAGCGCGTGGCCCAGGGCCAGACT < 41bp 1 0.525545778984104 1 0.312163114547729 experiment 0.948908442031793 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110236 chr9:140110238 synonymous SNV . 0 23 hm5C_associated_SNPs_8516 0 0 1 0 1 NDOR1 chr9:140110257 5'GT 140110257 Upstream 20bp
chr9 140135784 140135784 1 + C A rs11545612 140135802 + 140135782 140135822 41 CTCCTGCTTCCCCGCCGCCGCCGCCGCCATCATGAGGGAAA CTACTGCTTCCCCGCCGCCGCCGCCGCCATCATGAGGGAAA < 41bp 1 0.128223957270403 1 0.0838532149791718 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TUBB4B ENSG00000188229 UTR5 Human protein_coding chr9:140135802 chr9:140135784 . . 0 3 hm5C_associated_SNPs_8517 0 0 1 0 1 TUBB4B chr9:140135869 5'GT 140135869 Upstream 86bp
chr9 140135797 140135797 1 + C A rs556036177 140135802 + 140135782 140135822 41 CTCCTGCTTCCCCGCCGCCGCCGCCGCCATCATGAGGGAAA CTCCTGCTTCCCCGCAGCCGCCGCCGCCATCATGAGGGAAA < 41bp 1 0.131517780090294 1 0.0719948709011078 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TUBB4B ENSG00000188229 UTR5 Human protein_coding chr9:140135802 chr9:140135797 . . 0 16 hm5C_associated_SNPs_8518 0 0 1 0 1 TUBB4B chr9:140135869 5'GT 140135869 Upstream 73bp
chr9 140167022 140167022 1 + G A rs3204123 140167018 + 140166998 140167038 41 TCACCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGT TCACCTGCACCCCAGGGTGGCCCCATCTAAGCTGGAGGCGT < 41bp 1 0.432324088142509 1 0.126608431339264 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167018 chr9:140167022 synonymous SNV . 0 25 hm5C_associated_SNPs_8519 0 0 1 0 2 NELFB chr9:140166959 3'AG 140166959 Downstream 64bp
chr9 140167022 140167022 1 + G A rs3204123 140167018 + 140166998 140167038 41 TCACCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGT TCACCTGCACCCCAGGGTGGCCCCATCTAAGCTGGAGGCGT < 41bp 1 0.432324088142509 1 0.126608431339264 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167018 chr9:140167022 synonymous SNV . 0 25 hm5C_associated_SNPs_8519 0 0 1 0 2 NELFB chr9:140167067 5'GT 140167067 Upstream 46bp
chr9 140167022 140167022 1 + G A rs3204123 140167019 + 140166999 140167039 41 CACCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGTT CACCTGCACCCCAGGGTGGCCCCATCTAAGCTGGAGGCGTT < 41bp 1 0.147947100820191 1 0.214255839586258 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167019 chr9:140167022 synonymous SNV . 0 24 hm5C_associated_SNPs_8520 0 0 1 0 2 NELFB chr9:140166959 3'AG 140166959 Downstream 64bp
chr9 140167022 140167022 1 + G A rs3204123 140167019 + 140166999 140167039 41 CACCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGTT CACCTGCACCCCAGGGTGGCCCCATCTAAGCTGGAGGCGTT < 41bp 1 0.147947100820191 1 0.214255839586258 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167019 chr9:140167022 synonymous SNV . 0 24 hm5C_associated_SNPs_8520 0 0 1 0 2 NELFB chr9:140167067 5'GT 140167067 Upstream 46bp
chr9 140167022 140167022 1 + G A rs3204123 140167020 + 140167000 140167040 41 ACCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGTTG ACCTGCACCCCAGGGTGGCCCCATCTAAGCTGGAGGCGTTG < 41bp 1 0.0729847723441524 1 0.249065071344376 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167020 chr9:140167022 synonymous SNV . 0 23 hm5C_associated_SNPs_8521 0 0 1 0 2 NELFB chr9:140166959 3'AG 140166959 Downstream 64bp
chr9 140167022 140167022 1 + G A rs3204123 140167020 + 140167000 140167040 41 ACCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGTTG ACCTGCACCCCAGGGTGGCCCCATCTAAGCTGGAGGCGTTG < 41bp 1 0.0729847723441524 1 0.249065071344376 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167020 chr9:140167022 synonymous SNV . 0 23 hm5C_associated_SNPs_8521 0 0 1 0 2 NELFB chr9:140167067 5'GT 140167067 Upstream 46bp
chr9 140167022 140167022 1 + G A rs3204123 140167021 + 140167001 140167041 41 CCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGTTGC CCTGCACCCCAGGGTGGCCCCATCTAAGCTGGAGGCGTTGC < 41bp 1 0.289842984533631 1 0.238022446632385 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167021 chr9:140167022 synonymous SNV . 0 22 hm5C_associated_SNPs_8522 0 0 1 0 2 NELFB chr9:140166959 3'AG 140166959 Downstream 64bp
chr9 140167022 140167022 1 + G A rs3204123 140167021 + 140167001 140167041 41 CCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGTTGC CCTGCACCCCAGGGTGGCCCCATCTAAGCTGGAGGCGTTGC < 41bp 1 0.289842984533631 1 0.238022446632385 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167021 chr9:140167022 synonymous SNV . 0 22 hm5C_associated_SNPs_8522 0 0 1 0 2 NELFB chr9:140167067 5'GT 140167067 Upstream 46bp
chr10 1054898 1054898 1 + G A rs149656462 1054906 + 1054886 1054926 41 GGATCTTCTCAGGAGAGGCCCCCTTTCATCCCTGAAGGAGT GGATCTTCTCAGAAGAGGCCCCCTTTCATCCCTGAAGGAGT < 41bp 1 0.0300085682599896 1 0.036618709564209 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1054906 chr10:1054898 nonsynonymous SNV 0.695 1 13 hm5C_associated_SNPs_8528 0 0 1 0 1 GTPBP4 chr10:1054898 3'AG 1054898 Downstream 1bp
chr10 1054898 1054898 1 + G A rs149656462 1054907 + 1054887 1054927 41 GATCTTCTCAGGAGAGGCCCCCTTTCATCCCTGAAGGAGTG GATCTTCTCAGAAGAGGCCCCCTTTCATCCCTGAAGGAGTG < 41bp 1 0.0159718803205385 1 0.10677033662796 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1054907 chr10:1054898 nonsynonymous SNV 0.695 1 12 hm5C_associated_SNPs_8529 0 0 1 0 1 GTPBP4 chr10:1054898 3'AG 1054898 Downstream 1bp
chr10 3155620 3155620 1 + A G rs1052309 3155619 + 3155599 3155639 41 ACCCGCGGCTGGGATGAACGCAGCCGTACGCTCAGCTGTGC ACCCGCGGCTGGGATGAACGCGGCCGTACGCTCAGCTGTGC < 41bp 1 0.762566107265417 1 0.877486884593964 experiment 0.474867785469166 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKP ENSG00000067057 CDS Human protein_coding chr10:3155619 chr10:3155620 synonymous SNV . 0 22 hm5C_associated_SNPs_8530 0 0 1 0 1 PFKP chr10:3155710 5'GT 3155710 Upstream 91bp
chr10 3159047 3159047 1 + C T rs191057630 3159066 + 3159046 3159086 41 CCAAATCTCAACTCTATGACCTGCTTTTAAGGAAGAAGGAA CTAAATCTCAACTCTATGACCTGCTTTTAAGGAAGAAGGAA < 41bp 1 0.154430251207337 1 0.105188250541687 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PFKP ENSG00000067057 intronic Human protein_coding chr10:3159066 chr10:3159047 . . 0 2 hm5C_associated_SNPs_8531 0 0 1 0 1 PFKP chr10:3158968 3'AG 3158968 Downstream 80bp
chr10 3159062 3159062 1 + T A rs149727814 3159066 + 3159046 3159086 41 CCAAATCTCAACTCTATGACCTGCTTTTAAGGAAGAAGGAA CCAAATCTCAACTCTAAGACCTGCTTTTAAGGAAGAAGGAA < 41bp 1 0.158785365854388 1 0.120429545640945 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PFKP ENSG00000067057 intronic Human protein_coding chr10:3159066 chr10:3159062 . . 0 17 hm5C_associated_SNPs_8532 0 0 1 0 1 PFKP chr10:3158968 3'AG 3158968 Downstream 95bp
chr10 4950600 4950600 1 + A T rs529748637 4950605 + 4950585 4950625 41 AGGCTGTGTTAAGTGATTCTCTGACAAGGTAAGATCTAATG AGGCTGTGTTAAGTGTTTCTCTGACAAGGTAAGATCTAATG < 41bp 1 0.267753839245418 1 0.332634776830673 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1C6P ENSG00000187134 UTR5 Human protein_coding chr10:4950605 chr10:4950600 . . 0 16 hm5C_associated_SNPs_8534 0 0 0 0 2 AKR1C6P chr10:4950543 3'AG 4950543 Downstream 58bp
chr10 4950600 4950600 1 + A T rs529748637 4950605 + 4950585 4950625 41 AGGCTGTGTTAAGTGATTCTCTGACAAGGTAAGATCTAATG AGGCTGTGTTAAGTGTTTCTCTGACAAGGTAAGATCTAATG < 41bp 1 0.267753839245418 1 0.332634776830673 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1C6P ENSG00000187134 UTR5 Human protein_coding chr10:4950605 chr10:4950600 . . 0 16 hm5C_associated_SNPs_8534 0 0 0 0 2 AKR1C6P chr10:4950612 5'GT 4950612 Upstream 13bp
chr10 6131082 6131082 1 + G C rs112177726 6131098 + 6131078 6131118 41 GGCGGGTTTCCGCGGAGTGCCGCCCGGCTCCGCTCTGCCGC GGCGCGTTTCCGCGGAGTGCCGCCCGGCTCCGCTCTGCCGC < 41bp 1 0.735986635313082 1 0.256318151950836 experiment 0.528026729373837 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM17 ENSG00000134453 UTR5 Human protein_coding chr10:6131098 chr10:6131082 . . 0 5 hm5C_associated_SNPs_8537 0 0 1 0 1 RBM17 chr10:6131156 5'GT 6131156 Upstream 75bp
chr10 12111090 12111090 1 + T A rs1279138 12111105 + 12111085 12111125 41 CTCTCTTCTGGCGTGGCTACCAGACCGAGCGGGGCGTTTAC CTCTCATCTGGCGTGGCTACCAGACCGAGCGGGGCGTTTAC < 41bp 1 0.535938141216282 1 0.444387406110764 experiment 0.928123717567435 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12111105 chr10:12111090 nonsynonymous SNV 0.223 0 6 hm5C_associated_SNPs_8548 0 0 1 0 1 DHTKD1 chr10:12111186 5'GT 12111186 Upstream 97bp
chr10 12148361 12148361 1 + T C rs561946429 12148373 + 12148353 12148393 41 TTCAATGGTGCCCAGATCATCTTTGACACATTCATCTCTGG TTCAATGGCGCCCAGATCATCTTTGACACATTCATCTCTGG < 41bp 1 0.149708246250613 1 0.192356288433075 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12148373 chr10:12148361 synonymous SNV . 0 9 hm5C_associated_SNPs_8549 0 0 1 0 1 DHTKD1 chr10:12148395 5'GT 12148395 Upstream 35bp
chr10 12162789 12162789 1 + C A rs143212640 12162801 + 12162781 12162821 41 TATAGCTCCGTCTGGTGGGCCGGCCCCCTTTGCCAGTACCC TATAGCTCAGTCTGGTGGGCCGGCCCCCTTTGCCAGTACCC < 41bp 1 0.152925939480861 1 0.67154186964035 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12162801 chr10:12162789 nonsynonymous SNV 0.695 1 9 hm5C_associated_SNPs_8550 0 0 0 0 1 DHTKD1 chr10:12162786 3'AG 12162786 Downstream 4bp
chr10 12191697 12191697 1 + T C rs141011007 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT AATCATTGAAGTTGGAGATACACCGAAAGACAGAGCTTTAT < 41bp 1 0.593816970381208 1 0.0587634444236755 experiment 0.812366059237584 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191697 synonymous SNV . 0 31 hm5C_associated_SNPs_8551 0 0 1 5 1 SEC61A2 chr10:12191725 5'GT 12191725 Upstream 29bp
chr10 17271365 17271365 1 + T C rs373139864 17271373 + 17271353 17271393 41 GTTCGCCTCTTCTCCGGGAGCCAGTCCGCGCCACCGCCGCC GTTCGCCTCTTCCCCGGGAGCCAGTCCGCGCCACCGCCGCC < 41bp 1 0.612762440560123 1 0.0966763198375702 experiment 0.774475118879754 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VIM-AS1 ENSG00000229124 ncRNA_exonic Human antisense chr10:17271373 chr10:17271365 . . 0 13 hm5C_associated_SNPs_8567 0 0 1 0 1 VIM-AS1 chr10:17271275 3'AG 17271275 Downstream 91bp
chr10 17271963 17271963 1 + A C rs149942621 17271952 + 17271932 17271972 41 GTCGAGGTGGAGCGCGACAACCTGGCCGAGGACATCATGCG GTCGAGGTGGAGCGCGACAACCTGGCCGAGGCCATCATGCG < 41bp 1 0.445984984435506 1 0.341727793216705 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17271952 chr10:17271963 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_8572 0 0 1 0 1 VIM chr10:17271984 5'GT 17271984 Upstream 22bp
chr10 17275861 17275861 1 + C T rs4903 17275853 + 17275833 17275873 41 AGCCTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAA AGCCTGACCTCACGGCTGCCCTGCGTGATGTACGTCAGCAA < 41bp 1 0.644870930969309 1 0.686524510383606 experiment 0.710258138061381 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275853 chr10:17275861 synonymous SNV . 0 29 hm5C_associated_SNPs_8573 0 0 1 1 2 VIM chr10:17275769 3'AG 17275769 Downstream 93bp
chr10 17275861 17275861 1 + C T rs4903 17275853 + 17275833 17275873 41 AGCCTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAA AGCCTGACCTCACGGCTGCCCTGCGTGATGTACGTCAGCAA < 41bp 1 0.644870930969309 1 0.686524510383606 experiment 0.710258138061381 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275853 chr10:17275861 synonymous SNV . 0 29 hm5C_associated_SNPs_8573 0 0 1 1 2 VIM chr10:17275930 5'GT 17275930 Upstream 70bp
chr10 17275861 17275861 1 + C T rs4903 17275856 + 17275836 17275876 41 CTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAATAT CTGACCTCACGGCTGCCCTGCGTGATGTACGTCAGCAATAT < 41bp 1 0.490324611059656 1 0.204555660486221 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275856 chr10:17275861 synonymous SNV . 0 26 hm5C_associated_SNPs_8574 0 0 1 1 2 VIM chr10:17275769 3'AG 17275769 Downstream 93bp
chr10 17275861 17275861 1 + C T rs4903 17275856 + 17275836 17275876 41 CTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAATAT CTGACCTCACGGCTGCCCTGCGTGATGTACGTCAGCAATAT < 41bp 1 0.490324611059656 1 0.204555660486221 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275856 chr10:17275861 synonymous SNV . 0 26 hm5C_associated_SNPs_8574 0 0 1 1 2 VIM chr10:17275930 5'GT 17275930 Upstream 70bp
chr10 24816990 24816990 1 + G A rs145973323 24816988 + 24816968 24817008 41 CAATACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTG CAATACCAAATCTGGAGATGCCACCAGCCACAGGCCCACTG < 41bp 1 0.0951822220753011 1 0.0749241709709167 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816988 chr10:24816990 synonymous SNV . 0 23 hm5C_associated_SNPs_8577 0 0 1 0 1 KIAA1217 chr10:24817048 5'GT 24817048 Upstream 59bp
chr10 24816990 24816990 1 + G A rs145973323 24816992 + 24816972 24817012 41 ACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTGCCAA ACCAAATCTGGAGATGCCACCAGCCACAGGCCCACTGCCAA < 41bp 1 0.272014994299207 1 0.809942722320557 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816992 chr10:24816990 synonymous SNV . 0 19 hm5C_associated_SNPs_8578 0 0 1 0 1 KIAA1217 chr10:24817048 5'GT 24817048 Upstream 59bp
chr10 27469913 27469913 1 + T C rs115175971 27469905 + 27469885 27469925 41 CTGCGGTAGACTGGTGGGCACTTGGAGTTTGCTTGTTTGAA CTGCGGTAGACTGGTGGGCACTTGGAGTCTGCTTGTTTGAA < 41bp 1 0.274662654352808 1 0.175934374332428 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MASTL ENSG00000120539 CDS Human protein_coding chr10:27469905 chr10:27469913 synonymous SNV . 0 29 hm5C_associated_SNPs_8579 1 0 1 0 2 MASTL chr10:27469882 3'AG 27469882 Downstream 32bp
chr10 27469913 27469913 1 + T C rs115175971 27469905 + 27469885 27469925 41 CTGCGGTAGACTGGTGGGCACTTGGAGTTTGCTTGTTTGAA CTGCGGTAGACTGGTGGGCACTTGGAGTCTGCTTGTTTGAA < 41bp 1 0.274662654352808 1 0.175934374332428 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MASTL ENSG00000120539 CDS Human protein_coding chr10:27469905 chr10:27469913 synonymous SNV . 0 29 hm5C_associated_SNPs_8579 1 0 1 0 2 MASTL chr10:27469995 5'GT 27469995 Upstream 83bp
chr10 51582894 51582894 1 + C T rs41306524 51582890 + 51582870 51582910 41 AGCTCCTTACATACCCAGCACCGACCCCCAGGACTGGCTTA AGCTCCTTACATACCCAGCACCGATCCCCAGGACTGGCTTA < 41bp 1 0.0973813021998352 1 0.0515968799591064 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582890 chr10:51582894 synonymous SNV . 0 25 hm5C_associated_SNPs_8590 0 0 1 0 2 NCOA4 chr10:51582796 3'AG 51582796 Downstream 99bp
chr10 51582894 51582894 1 + C T rs41306524 51582890 + 51582870 51582910 41 AGCTCCTTACATACCCAGCACCGACCCCCAGGACTGGCTTA AGCTCCTTACATACCCAGCACCGATCCCCAGGACTGGCTTA < 41bp 1 0.0973813021998352 1 0.0515968799591064 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582890 chr10:51582894 synonymous SNV . 0 25 hm5C_associated_SNPs_8590 0 0 1 0 2 NCOA4 chr10:51582939 5'GT 51582939 Upstream 46bp
chr10 51582894 51582894 1 + C T rs41306524 51582891 + 51582871 51582911 41 GCTCCTTACATACCCAGCACCGACCCCCAGGACTGGCTTAC GCTCCTTACATACCCAGCACCGATCCCCAGGACTGGCTTAC < 41bp 1 0.0947697209872708 1 0.0642650723457336 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582891 chr10:51582894 synonymous SNV . 0 24 hm5C_associated_SNPs_8591 0 0 1 0 2 NCOA4 chr10:51582796 3'AG 51582796 Downstream 99bp
chr10 51582894 51582894 1 + C T rs41306524 51582891 + 51582871 51582911 41 GCTCCTTACATACCCAGCACCGACCCCCAGGACTGGCTTAC GCTCCTTACATACCCAGCACCGATCCCCAGGACTGGCTTAC < 41bp 1 0.0947697209872708 1 0.0642650723457336 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582891 chr10:51582894 synonymous SNV . 0 24 hm5C_associated_SNPs_8591 0 0 1 0 2 NCOA4 chr10:51582939 5'GT 51582939 Upstream 46bp
chr10 51582894 51582894 1 + C T rs41306524 51582895 + 51582875 51582915 41 CTTACATACCCAGCACCGACCCCCAGGACTGGCTTACCCAA CTTACATACCCAGCACCGATCCCCAGGACTGGCTTACCCAA < 41bp 1 0.637049388934916 1 0.261227041482925 experiment 0.725901222130168 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582895 chr10:51582894 synonymous SNV . 0 20 hm5C_associated_SNPs_8592 0 0 1 0 2 NCOA4 chr10:51582796 3'AG 51582796 Downstream 99bp
chr10 51582894 51582894 1 + C T rs41306524 51582895 + 51582875 51582915 41 CTTACATACCCAGCACCGACCCCCAGGACTGGCTTACCCAA CTTACATACCCAGCACCGATCCCCAGGACTGGCTTACCCAA < 41bp 1 0.637049388934916 1 0.261227041482925 experiment 0.725901222130168 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582895 chr10:51582894 synonymous SNV . 0 20 hm5C_associated_SNPs_8592 0 0 1 0 2 NCOA4 chr10:51582939 5'GT 51582939 Upstream 46bp
chr10 51582911 51582911 1 + C T rs113955117 51582891 + 51582871 51582911 41 GCTCCTTACATACCCAGCACCGACCCCCAGGACTGGCTTAC GCTCCTTACATACCCAGCACCGACCCCCAGGACTGGCTTAT < 41bp 1 0.178420038806759 1 0.0635435581207275 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582891 chr10:51582911 nonsynonymous SNV . 0 41 hm5C_associated_SNPs_8593 0 0 1 0 1 NCOA4 chr10:51582939 5'GT 51582939 Upstream 29bp
chr10 51582911 51582911 1 + C T rs113955117 51582895 + 51582875 51582915 41 CTTACATACCCAGCACCGACCCCCAGGACTGGCTTACCCAA CTTACATACCCAGCACCGACCCCCAGGACTGGCTTATCCAA < 41bp 1 0.52639819690408 1 0.377022564411163 experiment 0.947203606191841 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582895 chr10:51582911 nonsynonymous SNV . 0 37 hm5C_associated_SNPs_8594 0 0 1 0 1 NCOA4 chr10:51582939 5'GT 51582939 Upstream 29bp
chr10 51827969 51827969 1 + G T rs368992586 51827978 + 51827958 51827998 41 CAGAGCTGGTCGCTGGCGGCCGACGCGGGCGTGAGAGGCGG CAGAGCTGGTCTCTGGCGGCCGACGCGGGCGTGAGAGGCGG < 41bp 1 0.646361286684208 1 0.769592881202698 experiment 0.707277426631583 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WASHC2A ENSG00000099290 CDS Human protein_coding chr10:51827978 chr10:51827969 synonymous SNV . 0 12 hm5C_associated_SNPs_8596 0 0 0 0 1 WASHC2A chr10:51827987 5'GT 51827987 Upstream 19bp
chr10 64148315 64148315 1 + C G rs116297631 64148330 + 64148310 64148350 41 TTGTCCGTGATCTCAGCGGGCACGTGGTGAGTCACCCCGGG TTGTCGGTGATCTCAGCGGGCACGTGGTGAGTCACCCCGGG < 41bp 1 0.664217385385287 1 0.542498052120209 experiment 0.671565229229427 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF365 ENSG00000138311 CDS Human protein_coding chr10:64148330 chr10:64148315 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_8598 0 0 0 0 1 ZNF365 chr10:64148335 5'GT 64148335 Upstream 21bp
chr10 70098948 70098948 1 + A G rs2273903 70098937 + 70098917 70098957 41 TATGGTGGCTATAATAATTACGGCTATGGGAATGATGGCTT TATGGTGGCTATAATAATTACGGCTATGGGAGTGATGGCTT < 41bp 1 0.707344413364252 1 0.322259545326233 experiment 0.585311173271495 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPH3 ENSG00000096746 CDS Human protein_coding chr10:70098937 chr10:70098948 nonsynonymous SNV 0.995 1 32 hm5C_associated_SNPs_8625 0 0 1 0 2 HNRNPH3 chr10:70098897 3'AG 70098897 Downstream 52bp
chr10 70098948 70098948 1 + A G rs2273903 70098937 + 70098917 70098957 41 TATGGTGGCTATAATAATTACGGCTATGGGAATGATGGCTT TATGGTGGCTATAATAATTACGGCTATGGGAGTGATGGCTT < 41bp 1 0.707344413364252 1 0.322259545326233 experiment 0.585311173271495 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPH3 ENSG00000096746 CDS Human protein_coding chr10:70098937 chr10:70098948 nonsynonymous SNV 0.995 1 32 hm5C_associated_SNPs_8625 0 0 1 0 2 HNRNPH3 chr10:70098983 5'GT 70098983 Upstream 36bp
chr10 70098948 70098948 1 + A G rs2273903 70098955 + 70098935 70098975 41 TACGGCTATGGGAATGATGGCTTTGATGACAGAATGAGAGA TACGGCTATGGGAGTGATGGCTTTGATGACAGAATGAGAGA < 41bp 1 0.253363528430326 1 0.12833446264267 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPH3 ENSG00000096746 CDS Human protein_coding chr10:70098955 chr10:70098948 nonsynonymous SNV 0.995 1 14 hm5C_associated_SNPs_8626 0 0 1 0 2 HNRNPH3 chr10:70098897 3'AG 70098897 Downstream 52bp
chr10 70098948 70098948 1 + A G rs2273903 70098955 + 70098935 70098975 41 TACGGCTATGGGAATGATGGCTTTGATGACAGAATGAGAGA TACGGCTATGGGAGTGATGGCTTTGATGACAGAATGAGAGA < 41bp 1 0.253363528430326 1 0.12833446264267 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPH3 ENSG00000096746 CDS Human protein_coding chr10:70098955 chr10:70098948 nonsynonymous SNV 0.995 1 14 hm5C_associated_SNPs_8626 0 0 1 0 2 HNRNPH3 chr10:70098983 5'GT 70098983 Upstream 36bp
chr10 71048481 71048481 1 + A C rs144984081 71048474 + 71048454 71048494 41 GAAAAGCAGAAGAAAGGACCCGAGGTCAGCAAGTGCCCTCC GAAAAGCAGAAGAAAGGACCCGAGGTCCGCAAGTGCCCTCC < 41bp 1 0.762885389723844 1 0.90592885017395 experiment 0.474229220552312 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control HK1 ENSG00000156515 UTR5 Human protein_coding chr10:71048474 chr10:71048481 . . 0 28 hm5C_associated_SNPs_8629 0 0 0 0 2 HK1 chr10:71048427 3'AG 71048427 Downstream 55bp
chr10 71048481 71048481 1 + A C rs144984081 71048474 + 71048454 71048494 41 GAAAAGCAGAAGAAAGGACCCGAGGTCAGCAAGTGCCCTCC GAAAAGCAGAAGAAAGGACCCGAGGTCCGCAAGTGCCCTCC < 41bp 1 0.762885389723844 1 0.90592885017395 experiment 0.474229220552312 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control HK1 ENSG00000156515 UTR5 Human protein_coding chr10:71048474 chr10:71048481 . . 0 28 hm5C_associated_SNPs_8629 0 0 0 0 2 HK1 chr10:71048526 5'GT 71048526 Upstream 46bp
chr10 72326400 72326400 1 + G A rs10999406 72326417 + 72326397 72326437 41 AGCGGGGAGGACCAGCCCTTCTCCAGGCTGCGCTACCGGTG AGCAGGGAGGACCAGCCCTTCTCCAGGCTGCGCTACCGGTG < 41bp 1 0.785909824430349 1 0.89579439163208 experiment 0.428180351139302 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72326417 chr10:72326400 nonsynonymous SNV 0.158 0 4 hm5C_associated_SNPs_8636 0 0 0 0 1 PALD1 chr10:72326337 3'AG 72326337 Downstream 64bp
chr10 73056484 73056484 1 + T C rs12783269 73056491 + 73056471 73056511 41 TATTCCAGCTGCATACCACTCTGGCAGAGGTGAGGGAAGTC TATTCCAGCTGCACACCACTCTGGCAGAGGTGAGGGAAGTC < 41bp 1 0.439357156415176 1 0.409312069416046 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UNC5B ENSG00000107731 CDS Human protein_coding chr10:73056491 chr10:73056484 synonymous SNV . 0 14 hm5C_associated_SNPs_8638 0 0 1 0 1 UNC5B chr10:73056499 5'GT 73056499 Upstream 16bp
chr10 73056490 73056490 1 + T A rs12783281 73056491 + 73056471 73056511 41 TATTCCAGCTGCATACCACTCTGGCAGAGGTGAGGGAAGTC TATTCCAGCTGCATACCACACTGGCAGAGGTGAGGGAAGTC < 41bp 1 0.364883821663164 1 0.0860143601894379 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UNC5B ENSG00000107731 CDS Human protein_coding chr10:73056491 chr10:73056490 synonymous SNV . 0 20 hm5C_associated_SNPs_8639 0 0 1 0 1 UNC5B chr10:73056499 5'GT 73056499 Upstream 10bp
chr10 73056496 73056496 1 + A G rs12781632 73056491 + 73056471 73056511 41 TATTCCAGCTGCATACCACTCTGGCAGAGGTGAGGGAAGTC TATTCCAGCTGCATACCACTCTGGCGGAGGTGAGGGAAGTC < 41bp 1 0.500080399522086 1 0.591829657554626 experiment 0.999839200955829 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UNC5B ENSG00000107731 CDS Human protein_coding chr10:73056491 chr10:73056496 synonymous SNV . 0 26 hm5C_associated_SNPs_8640 0 0 0 0 1 UNC5B chr10:73056499 5'GT 73056499 Upstream 4bp
chr10 73111532 73111532 1 + G A rs16928737 73111516 + 73111496 73111536 41 CGGCATGACCGGCTCCTTTCCTATGAGGAACTCCCAGGCAC CGGCATGACCGGCTCCTTTCCTATGAGGAACTCCCAAGCAC < 41bp 1 0.496058874160721 1 0.344882547855377 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73111516 chr10:73111532 synonymous SNV . 0 37 hm5C_associated_SNPs_8643 2 0 0 0 1 SLC29A3 chr10:73111545 5'GT 73111545 Upstream 14bp
chr10 73566027 73566027 1 + G C rs142857685 73566026 + 73566006 73566046 41 GATGACAACGAACCCCTTTTCGTGAGGCCTCCAGTGAGCTT GATGACAACGAACCCCTTTTCCTGAGGCCTCCAGTGAGCTT < 41bp 1 0.336960620660594 1 0.142078280448914 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH23 ENSG00000107736 CDS Human protein_coding chr10:73566026 chr10:73566027 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_8644 1 0 0 0 1 CDH23 chr10:73566038 5'GT 73566038 Upstream 12bp
chr10 75506674 75506674 1 + T C rs2306325 75506660 + 75506640 75506680 41 AGCCCATCTACCCAGGGTATCATCAGTCCAGCTATGGTGGG AGCCCATCTACCCAGGGTATCATCAGTCCAGCTACGGTGGG < 41bp 1 0.620361025234594 1 0.195469230413437 experiment 0.759277949530811 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75506660 chr10:75506674 synonymous SNV . 0 35 hm5C_associated_SNPs_8668 0 0 1 0 1 SEC24C chr10:75506762 5'GT 75506762 Upstream 89bp
chr10 75506675 75506675 1 + G A rs538595432 75506660 + 75506640 75506680 41 AGCCCATCTACCCAGGGTATCATCAGTCCAGCTATGGTGGG AGCCCATCTACCCAGGGTATCATCAGTCCAGCTATAGTGGG < 41bp 1 0.593703942865643 1 0.33780500292778 experiment 0.812592114268714 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75506660 chr10:75506675 nonsynonymous SNV 0.655 0 36 hm5C_associated_SNPs_8669 0 0 1 0 1 SEC24C chr10:75506762 5'GT 75506762 Upstream 88bp
chr10 75557812 75557812 1 + C T rs118026121 75557805 + 75557785 75557825 41 CTGGCTCTCACGTACTTATTCTTCCCACGTTTCCTGGATTA CTGGCTCTCACGTACTTATTCTTCCCATGTTTCCTGGATTA < 41bp 1 0.10314556037784 1 0.0769293010234833 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75557805 chr10:75557812 nonsynonymous SNV . 0 28 hm5C_associated_SNPs_8671 0 0 1 0 1 ZSWIM8 chr10:75557828 5'GT 75557828 Upstream 17bp
chr10 75758085 75758085 1 + C A rs144080529 75758099 + 75758079 75758119 41 TGACCTCACCGCGCCCGTGGCCGCCGTGCAGGCGGCCGTCA TGACCTAACCGCGCCCGTGGCCGCCGTGCAGGCGGCCGTCA < 41bp 1 0.327997139122999 1 0.183728456497192 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75758099 chr10:75758085 synonymous SNV . 0 7 hm5C_associated_SNPs_8672 0 0 1 0 1 VCL chr10:75758133 5'GT 75758133 Upstream 49bp
chr10 75758085 75758085 1 + C A rs144080529 75758100 + 75758080 75758120 41 GACCTCACCGCGCCCGTGGCCGCCGTGCAGGCGGCCGTCAG GACCTAACCGCGCCCGTGGCCGCCGTGCAGGCGGCCGTCAG < 41bp 1 0.775103106406005 1 0.315212070941925 experiment 0.449793787187991 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75758100 chr10:75758085 synonymous SNV . 0 6 hm5C_associated_SNPs_8673 0 0 1 0 1 VCL chr10:75758133 5'GT 75758133 Upstream 49bp
chr10 75758085 75758085 1 + C A rs144080529 75758102 + 75758082 75758122 41 CCTCACCGCGCCCGTGGCCGCCGTGCAGGCGGCCGTCAGCA CCTAACCGCGCCCGTGGCCGCCGTGCAGGCGGCCGTCAGCA < 41bp 1 0.292428409272321 1 0.348948657512665 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75758102 chr10:75758085 synonymous SNV . 0 4 hm5C_associated_SNPs_8674 0 0 1 0 1 VCL chr10:75758133 5'GT 75758133 Upstream 49bp
chr10 75758085 75758085 1 + C A rs144080529 75758103 + 75758083 75758123 41 CTCACCGCGCCCGTGGCCGCCGTGCAGGCGGCCGTCAGCAA CTAACCGCGCCCGTGGCCGCCGTGCAGGCGGCCGTCAGCAA < 41bp 1 0.284555859331784 1 0.244079917669296 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75758103 chr10:75758085 synonymous SNV . 0 3 hm5C_associated_SNPs_8675 0 0 1 0 1 VCL chr10:75758133 5'GT 75758133 Upstream 49bp
chr10 75867074 75867074 1 + G C rs150385900 75867081 + 75867061 75867101 41 ACCTCAGGAGCCTGACTTCCCGCCGCCTCCACCAGACCTTG ACCTCAGGAGCCTCACTTCCCGCCGCCTCCACCAGACCTTG < 41bp 1 0.641270551572695 1 0.145939588546753 experiment 0.717458896854611 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75867081 chr10:75867074 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_8676 5 0 1 0 2 VCL chr10:75866988 3'AG 75866988 Downstream 87bp
chr10 75867074 75867074 1 + G C rs150385900 75867081 + 75867061 75867101 41 ACCTCAGGAGCCTGACTTCCCGCCGCCTCCACCAGACCTTG ACCTCAGGAGCCTCACTTCCCGCCGCCTCCACCAGACCTTG < 41bp 1 0.641270551572695 1 0.145939588546753 experiment 0.717458896854611 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75867081 chr10:75867074 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_8676 5 0 1 0 2 VCL chr10:75867112 5'GT 75867112 Upstream 39bp
chr10 79797035 79797035 1 + A G rs139181869 79797031 + 79797011 79797051 41 AATGAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGTG AATGAAGAAAGTCAGGGGGACTGCGAAGGCCAATGTTGGTG < 41bp 1 0.533969310008342 1 0.228733658790588 experiment 0.932061379983316 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797031 chr10:79797035 synonymous SNV . 0 25 hm5C_associated_SNPs_8678 1 0 1 0 2 RPS24 chr10:79796952 3'AG 79796952 Downstream 84bp
chr10 79797035 79797035 1 + A G rs139181869 79797031 + 79797011 79797051 41 AATGAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGTG AATGAAGAAAGTCAGGGGGACTGCGAAGGCCAATGTTGGTG < 41bp 1 0.533969310008342 1 0.228733658790588 experiment 0.932061379983316 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797031 chr10:79797035 synonymous SNV . 0 25 hm5C_associated_SNPs_8678 1 0 1 0 2 RPS24 chr10:79797062 5'GT 79797062 Upstream 28bp
chr10 79797035 79797035 1 + A G rs139181869 79797034 + 79797014 79797054 41 GAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTG GAAGAAAGTCAGGGGGACTGCGAAGGCCAATGTTGGTGCTG < 41bp 1 0.669273325843238 1 0.673746287822723 experiment 0.661453348313524 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797034 chr10:79797035 synonymous SNV . 0 22 hm5C_associated_SNPs_8679 1 0 1 0 2 RPS24 chr10:79796952 3'AG 79796952 Downstream 84bp
chr10 79797035 79797035 1 + A G rs139181869 79797034 + 79797014 79797054 41 GAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTG GAAGAAAGTCAGGGGGACTGCGAAGGCCAATGTTGGTGCTG < 41bp 1 0.669273325843238 1 0.673746287822723 experiment 0.661453348313524 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797034 chr10:79797035 synonymous SNV . 0 22 hm5C_associated_SNPs_8679 1 0 1 0 2 RPS24 chr10:79797062 5'GT 79797062 Upstream 28bp
chr10 79797035 79797035 1 + A G rs139181869 79797041 + 79797021 79797061 41 GTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTGGCAAAAA GTCAGGGGGACTGCGAAGGCCAATGTTGGTGCTGGCAAAAA < 41bp 1 0.373315076857292 1 0.121356964111328 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797041 chr10:79797035 synonymous SNV . 0 15 hm5C_associated_SNPs_8680 1 0 1 0 2 RPS24 chr10:79796952 3'AG 79796952 Downstream 84bp
chr10 79797035 79797035 1 + A G rs139181869 79797041 + 79797021 79797061 41 GTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTGGCAAAAA GTCAGGGGGACTGCGAAGGCCAATGTTGGTGCTGGCAAAAA < 41bp 1 0.373315076857292 1 0.121356964111328 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797041 chr10:79797035 synonymous SNV . 0 15 hm5C_associated_SNPs_8680 1 0 1 0 2 RPS24 chr10:79797062 5'GT 79797062 Upstream 28bp
chr10 79797035 79797035 1 + A G rs139181869 79797052 + 79797032 79797072 41 TGCAAAGGCCAATGTTGGTGCTGGCAAAAAGGTATAGTTCA TGCGAAGGCCAATGTTGGTGCTGGCAAAAAGGTATAGTTCA < 41bp 1 0.340091059874814 1 0.210737943649292 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797052 chr10:79797035 synonymous SNV . 0 4 hm5C_associated_SNPs_8681 1 0 1 0 2 RPS24 chr10:79796952 3'AG 79796952 Downstream 84bp
chr10 79797035 79797035 1 + A G rs139181869 79797052 + 79797032 79797072 41 TGCAAAGGCCAATGTTGGTGCTGGCAAAAAGGTATAGTTCA TGCGAAGGCCAATGTTGGTGCTGGCAAAAAGGTATAGTTCA < 41bp 1 0.340091059874814 1 0.210737943649292 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797052 chr10:79797035 synonymous SNV . 0 4 hm5C_associated_SNPs_8681 1 0 1 0 2 RPS24 chr10:79797062 5'GT 79797062 Upstream 28bp
chr10 79797050 79797050 1 + T A rs151246531 79797031 + 79797011 79797051 41 AATGAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGTG AATGAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGAG < 41bp 1 0.686077016812624 1 0.453272044658661 experiment 0.627845966374752 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797031 chr10:79797050 synonymous SNV . 0 40 hm5C_associated_SNPs_8682 0 0 1 0 2 RPS24 chr10:79796952 3'AG 79796952 Downstream 99bp
chr10 79797050 79797050 1 + T A rs151246531 79797031 + 79797011 79797051 41 AATGAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGTG AATGAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGAG < 41bp 1 0.686077016812624 1 0.453272044658661 experiment 0.627845966374752 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797031 chr10:79797050 synonymous SNV . 0 40 hm5C_associated_SNPs_8682 0 0 1 0 2 RPS24 chr10:79797062 5'GT 79797062 Upstream 13bp
chr10 79797050 79797050 1 + T A rs151246531 79797034 + 79797014 79797054 41 GAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTG GAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGAGCTG < 41bp 1 0.633282711776073 1 0.538677453994751 experiment 0.733434576447854 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797034 chr10:79797050 synonymous SNV . 0 37 hm5C_associated_SNPs_8683 0 0 1 0 2 RPS24 chr10:79796952 3'AG 79796952 Downstream 99bp
chr10 79797050 79797050 1 + T A rs151246531 79797034 + 79797014 79797054 41 GAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTG GAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGAGCTG < 41bp 1 0.633282711776073 1 0.538677453994751 experiment 0.733434576447854 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797034 chr10:79797050 synonymous SNV . 0 37 hm5C_associated_SNPs_8683 0 0 1 0 2 RPS24 chr10:79797062 5'GT 79797062 Upstream 13bp
chr10 79797050 79797050 1 + T A rs151246531 79797041 + 79797021 79797061 41 GTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTGGCAAAAA GTCAGGGGGACTGCAAAGGCCAATGTTGGAGCTGGCAAAAA < 41bp 1 0.404256907337585 1 0.157859742641449 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797041 chr10:79797050 synonymous SNV . 0 30 hm5C_associated_SNPs_8684 0 0 1 0 2 RPS24 chr10:79796952 3'AG 79796952 Downstream 99bp
chr10 79797050 79797050 1 + T A rs151246531 79797041 + 79797021 79797061 41 GTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTGGCAAAAA GTCAGGGGGACTGCAAAGGCCAATGTTGGAGCTGGCAAAAA < 41bp 1 0.404256907337585 1 0.157859742641449 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797041 chr10:79797050 synonymous SNV . 0 30 hm5C_associated_SNPs_8684 0 0 1 0 2 RPS24 chr10:79797062 5'GT 79797062 Upstream 13bp
chr10 79797050 79797050 1 + T A rs151246531 79797052 + 79797032 79797072 41 TGCAAAGGCCAATGTTGGTGCTGGCAAAAAGGTATAGTTCA TGCAAAGGCCAATGTTGGAGCTGGCAAAAAGGTATAGTTCA < 41bp 1 0.352120494352138 1 0.317558974027634 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797052 chr10:79797050 synonymous SNV . 0 19 hm5C_associated_SNPs_8685 0 0 1 0 2 RPS24 chr10:79796952 3'AG 79796952 Downstream 99bp
chr10 79797050 79797050 1 + T A rs151246531 79797052 + 79797032 79797072 41 TGCAAAGGCCAATGTTGGTGCTGGCAAAAAGGTATAGTTCA TGCAAAGGCCAATGTTGGAGCTGGCAAAAAGGTATAGTTCA < 41bp 1 0.352120494352138 1 0.317558974027634 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797052 chr10:79797050 synonymous SNV . 0 19 hm5C_associated_SNPs_8685 0 0 1 0 2 RPS24 chr10:79797062 5'GT 79797062 Upstream 13bp
chr10 79797050 79797050 1 + T A rs151246531 79797056 + 79797036 79797076 41 AAGGCCAATGTTGGTGCTGGCAAAAAGGTATAGTTCATTAA AAGGCCAATGTTGGAGCTGGCAAAAAGGTATAGTTCATTAA < 41bp 1 0.537261688789225 1 0.260467231273651 experiment 0.92547662242155 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797056 chr10:79797050 synonymous SNV . 0 15 hm5C_associated_SNPs_8686 0 0 1 0 2 RPS24 chr10:79796952 3'AG 79796952 Downstream 99bp
chr10 79797050 79797050 1 + T A rs151246531 79797056 + 79797036 79797076 41 AAGGCCAATGTTGGTGCTGGCAAAAAGGTATAGTTCATTAA AAGGCCAATGTTGGAGCTGGCAAAAAGGTATAGTTCATTAA < 41bp 1 0.537261688789225 1 0.260467231273651 experiment 0.92547662242155 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797056 chr10:79797050 synonymous SNV . 0 15 hm5C_associated_SNPs_8686 0 0 1 0 2 RPS24 chr10:79797062 5'GT 79797062 Upstream 13bp
chr10 79799975 79799975 1 + G A rs139289215 79799966 + 79799946 79799986 41 CCCGCCACTGATTCAGTGAGCTGGAGATTGGATCACAGGTA CCCGCCACTGATTCAGTGAGCTGGAGATTAGATCACAGGTA < 41bp 1 0.698286090241184 1 0.559856414794922 experiment 0.603427819517632 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 UTR3 Human protein_coding chr10:79799966 chr10:79799975 . . 0 30 hm5C_associated_SNPs_8687 1 0 1 1 2 RPS24 chr10:79799962 3'AG 79799962 Downstream 14bp
chr10 79799975 79799975 1 + G A rs139289215 79799966 + 79799946 79799986 41 CCCGCCACTGATTCAGTGAGCTGGAGATTGGATCACAGGTA CCCGCCACTGATTCAGTGAGCTGGAGATTAGATCACAGGTA < 41bp 1 0.698286090241184 1 0.559856414794922 experiment 0.603427819517632 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 UTR3 Human protein_coding chr10:79799966 chr10:79799975 . . 0 30 hm5C_associated_SNPs_8687 1 0 1 1 2 RPS24 chr10:79799983 5'GT 79799983 Upstream 9bp
chr10 79799975 79799975 1 + G A rs139289215 79799981 + 79799961 79800001 41 GTGAGCTGGAGATTGGATCACAGGTATAATTCAAGCTTTTC GTGAGCTGGAGATTAGATCACAGGTATAATTCAAGCTTTTC < 41bp 1 0.481979322913641 1 0.442115902900696 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS24 ENSG00000138326 UTR3 Human protein_coding chr10:79799981 chr10:79799975 . . 0 15 hm5C_associated_SNPs_8688 1 0 1 1 2 RPS24 chr10:79799962 3'AG 79799962 Downstream 14bp
chr10 79799975 79799975 1 + G A rs139289215 79799981 + 79799961 79800001 41 GTGAGCTGGAGATTGGATCACAGGTATAATTCAAGCTTTTC GTGAGCTGGAGATTAGATCACAGGTATAATTCAAGCTTTTC < 41bp 1 0.481979322913641 1 0.442115902900696 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS24 ENSG00000138326 UTR3 Human protein_coding chr10:79799981 chr10:79799975 . . 0 15 hm5C_associated_SNPs_8688 1 0 1 1 2 RPS24 chr10:79799983 5'GT 79799983 Upstream 9bp
chr10 80828974 80828974 1 + C T rs76908738 80828964 + 80828944 80828984 41 GCGCTCCTCCCGGCCCGAGCCTGCCCTACCCGGCGGTGGCG GCGCTCCTCCCGGCCCGAGCCTGCCCTACCTGGCGGTGGCG < 41bp 1 0.254001795288021 1 0.210050791501999 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZMIZ1 ENSG00000108175 UTR5 Human protein_coding chr10:80828964 chr10:80828974 . . 0 31 hm5C_associated_SNPs_8689 0 0 1 0 1 ZMIZ1 chr10:80829027 5'GT 80829027 Upstream 54bp
chr10 81107457 81107457 1 + C G rs2233715 81107439 + 81107419 81107459 41 TCTTCCTCCTCCTCCGGGAACCCGCTCGTGTACCTGGACGT TCTTCCTCCTCCTCCGGGAACCCGCTCGTGTACCTGGAGGT < 41bp 1 0.319016777732405 1 0.128939747810364 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PPIF ENSG00000108179 CDS Human protein_coding chr10:81107439 chr10:81107457 nonsynonymous SNV 0.014 4 39 hm5C_associated_SNPs_8700 0 0 1 0 1 PPIF chr10:81107499 5'GT 81107499 Upstream 43bp
chr10 81107457 81107457 1 + C G rs2233715 81107440 + 81107420 81107460 41 CTTCCTCCTCCTCCGGGAACCCGCTCGTGTACCTGGACGTG CTTCCTCCTCCTCCGGGAACCCGCTCGTGTACCTGGAGGTG < 41bp 1 0.338563913638501 1 0.115131437778473 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PPIF ENSG00000108179 CDS Human protein_coding chr10:81107440 chr10:81107457 nonsynonymous SNV 0.014 4 38 hm5C_associated_SNPs_8701 0 0 1 0 1 PPIF chr10:81107499 5'GT 81107499 Upstream 43bp
chr10 81109501 81109501 1 + A G rs143055894 81109491 + 81109471 81109511 41 TCCACCTTCCACAGGGTGATCCCTTCCTTCATGTGCCAGGT TCCACCTTCCACAGGGTGATCCCTTCCTTCGTGTGCCAGGT < 41bp 1 0.081153073886785 1 0.169249534606934 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PPIF ENSG00000108179 CDS Human protein_coding chr10:81109491 chr10:81109501 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_8702 0 0 1 0 2 PPIF chr10:81109421 3'AG 81109421 Downstream 81bp
chr10 81109501 81109501 1 + A G rs143055894 81109491 + 81109471 81109511 41 TCCACCTTCCACAGGGTGATCCCTTCCTTCATGTGCCAGGT TCCACCTTCCACAGGGTGATCCCTTCCTTCGTGTGCCAGGT < 41bp 1 0.081153073886785 1 0.169249534606934 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PPIF ENSG00000108179 CDS Human protein_coding chr10:81109491 chr10:81109501 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_8702 0 0 1 0 2 PPIF chr10:81109509 5'GT 81109509 Upstream 9bp
chr10 89419668 89419668 1 + C T rs182505319 89419676 + 89419656 89419696 41 TGCTGCTGCCGCCGCCGCCGCCGCCGTCCCTGCGTCCTTCG TGCTGCTGCCGCTGCCGCCGCCGCCGTCCCTGCGTCCTTCG < 41bp 1 0.487770675626975 1 0.514401376247406 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAPSS2 ENSG00000196566 ncRNA_exonic Human protein_coding chr10:89419676 chr10:89419668 . . 0 13 hm5C_associated_SNPs_8721 0 0 0 0 1 PAPSS2 chr10:89419765 5'GT 89419765 Upstream 98bp
chr10 89419668 89419668 1 + C T rs182505319 89419677 + 89419657 89419697 41 GCTGCTGCCGCCGCCGCCGCCGCCGTCCCTGCGTCCTTCGG GCTGCTGCCGCTGCCGCCGCCGCCGTCCCTGCGTCCTTCGG < 41bp 1 0.74374921493357 1 0.451562613248825 experiment 0.51250157013286 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAPSS2 ENSG00000196566 ncRNA_exonic Human protein_coding chr10:89419677 chr10:89419668 . . 0 12 hm5C_associated_SNPs_8722 0 0 0 0 1 PAPSS2 chr10:89419765 5'GT 89419765 Upstream 98bp
chr10 89419671 89419671 1 + C T rs185811230 89419676 + 89419656 89419696 41 TGCTGCTGCCGCCGCCGCCGCCGCCGTCCCTGCGTCCTTCG TGCTGCTGCCGCCGCTGCCGCCGCCGTCCCTGCGTCCTTCG < 41bp 1 0.514408301463243 1 0.39618793129921 experiment 0.971183397073514 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAPSS2 ENSG00000196566 ncRNA_exonic Human protein_coding chr10:89419676 chr10:89419671 . . 0 16 hm5C_associated_SNPs_8723 0 0 0 0 1 PAPSS2 chr10:89419765 5'GT 89419765 Upstream 95bp
chr10 89419671 89419671 1 + C T rs185811230 89419677 + 89419657 89419697 41 GCTGCTGCCGCCGCCGCCGCCGCCGTCCCTGCGTCCTTCGG GCTGCTGCCGCCGCTGCCGCCGCCGTCCCTGCGTCCTTCGG < 41bp 1 0.763679412918716 1 0.639571905136108 experiment 0.472641174162568 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAPSS2 ENSG00000196566 ncRNA_exonic Human protein_coding chr10:89419677 chr10:89419671 . . 0 15 hm5C_associated_SNPs_8724 0 0 0 0 1 PAPSS2 chr10:89419765 5'GT 89419765 Upstream 95bp
chr10 91174539 91174539 1 + T G rs192810189 91174534 + 91174514 91174554 41 GAGGGACTGCGCCGCCCGGACGGCCTGCAGAGCGCTGCCAT GAGGGACTGCGCCGCCCGGACGGCCGGCAGAGCGCTGCCAT < 41bp 1 0.781615245816153 1 0.449524819850922 experiment 0.436769508367694 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFIT5 ENSG00000152778 UTR5 Human protein_coding chr10:91174534 chr10:91174539 . . 0 26 hm5C_associated_SNPs_8725 0 0 0 0 1 IFIT5 chr10:91174560 5'GT 91174560 Upstream 22bp
chr10 91465096 91465096 1 + T A rs114316057 91465083 + 91465063 91465103 41 TTTTAATCAAGAGGGAGTACCTCGACCATCTTATGTTTTTA TTTTAATCAAGAGGGAGTACCTCGACCATCTTAAGTTTTTA < 41bp 1 0.733132829407666 1 0.687824547290802 experiment 0.533734341184667 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF20B ENSG00000138182 CDS Human protein_coding chr10:91465083 chr10:91465096 stopgain 1.000 0 34 hm5C_associated_SNPs_8726 0 0 1 0 1 KIF20B chr10:91465051 3'AG 91465051 Downstream 46bp
chr10 93751991 93751991 1 + C T rs151057472 93751990 + 93751970 93752010 41 CACAAGTAGGCGAGGTCCTACCCCCAAAGCAGTAAAAGCTC CACAAGTAGGCGAGGTCCTACTCCCAAAGCAGTAAAAGCTC < 41bp 1 0.379583287194945 1 0.361607432365417 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93751990 chr10:93751991 synonymous SNV . 0 22 hm5C_associated_SNPs_8727 0 0 1 0 1 BTAF1 chr10:93752066 5'GT 93752066 Upstream 76bp
chr10 94757362 94757362 1 + A G rs114345865 94757363 + 94757343 94757383 41 AGTTTAACTTAGATGTCATACAGTGTGAATGTAAGTACTAT AGTTTAACTTAGATGTCATGCAGTGTGAATGTAAGTACTAT < 41bp 1 0.204907041375102 1 0.150873154401779 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC6 ENSG00000138190 CDS Human protein_coding chr10:94757363 chr10:94757362 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_8728 0 0 1 1 1 EXOC6 chr10:94757372 5'GT 94757372 Upstream 11bp
chr10 94822669 94822669 1 + G A rs116394550 94822661 + 94822641 94822681 41 GGGGTTGCGGCTGGACGAGGCGCAGTGCGCCACGCTGGCCC GGGGTTGCGGCTGGACGAGGCGCAGTGCACCACGCTGGCCC < 41bp 1 0.714607550252515 1 0.461792856454849 experiment 0.570784899494971 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94822661 chr10:94822669 nonsynonymous SNV 0.459 0 29 hm5C_associated_SNPs_8729 0 0 0 0 1 CYP26C1 chr10:94822752 5'GT 94822752 Upstream 84bp
chr10 94822669 94822669 1 + G A rs116394550 94822663 + 94822643 94822683 41 GGTTGCGGCTGGACGAGGCGCAGTGCGCCACGCTGGCCCGG GGTTGCGGCTGGACGAGGCGCAGTGCACCACGCTGGCCCGG < 41bp 1 0.705183445025004 1 0.620749592781067 experiment 0.589633109949991 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94822663 chr10:94822669 nonsynonymous SNV 0.459 0 27 hm5C_associated_SNPs_8730 0 0 0 0 1 CYP26C1 chr10:94822752 5'GT 94822752 Upstream 84bp
chr10 97803409 97803409 1 + G A rs151011430 97803428 + 97803408 97803448 41 CGCAGCATGAGCGGGGCCGGCGTCCGCCGCACGACGGCGGG CACAGCATGAGCGGGGCCGGCGTCCGCCGCACGACGGCGGG < 41bp 1 0.551484404354681 1 0.377803325653076 experiment 0.897031191290639 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ENTPD1-AS1 ENSG00000226688 ncRNA_intronic Human antisense chr10:97803428 chr10:97803409 . . 0 2 hm5C_associated_SNPs_8737 0 0 1 0 1 ENTPD1-AS1 chr10:97803476 5'GT 97803476 Upstream 68bp
chr10 102242030 102242030 1 + G A rs9420786 102242029 + 102242009 102242049 41 CTCCTAGCTCTCTCCCCAGGCGGTGAAGGGCACCATGAAAC CTCCTAGCTCTCTCCCCAGGCAGTGAAGGGCACCATGAAAC < 41bp 1 0.386932178197503 1 0.235881328582764 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WNT8B ENSG00000075290 CDS Human protein_coding chr10:102242029 chr10:102242030 synonymous SNV . 0 22 hm5C_associated_SNPs_8747 0 0 0 0 1 WNT8B chr10:102242028 3'AG 102242028 Downstream 3bp
chr10 102795819 102795819 1 + A T rs35361377 102795823 + 102795803 102795843 41 TTCAATGCCATTGTTAACTACTCCAACCGCAGTGGTGACAC TTCAATGCCATTGTTATCTACTCCAACCGCAGTGGTGACAC < 41bp 1 0.792104045841996 1 0.955350399017334 experiment 0.415791908316007 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SFXN3 ENSG00000107819 CDS Human protein_coding chr10:102795823 chr10:102795819 nonsynonymous SNV 0.992 4 17 hm5C_associated_SNPs_8753 0 0 1 0 2 SFXN3 chr10:102795760 3'AG 102795760 Downstream 60bp
chr10 102795819 102795819 1 + A T rs35361377 102795823 + 102795803 102795843 41 TTCAATGCCATTGTTAACTACTCCAACCGCAGTGGTGACAC TTCAATGCCATTGTTATCTACTCCAACCGCAGTGGTGACAC < 41bp 1 0.792104045841996 1 0.955350399017334 experiment 0.415791908316007 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SFXN3 ENSG00000107819 CDS Human protein_coding chr10:102795823 chr10:102795819 nonsynonymous SNV 0.992 4 17 hm5C_associated_SNPs_8753 0 0 1 0 2 SFXN3 chr10:102795858 5'GT 102795858 Upstream 40bp
chr10 102826236 102826236 1 + G A rs558181999 102826239 + 102826219 102826259 41 GCGGCCCTAGGAGCCGCGCACAACAGCGCAAGCGGGCTGGA GCGGCCCTAGGAGCCGCACACAACAGCGCAAGCGGGCTGGA < 41bp 1 0.752878832379999 1 0.424730330705643 experiment 0.494242335240002 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KAZALD1 ENSG00000107821 downstream Human protein_coding chr10:102826239 chr10:102826236 . . 0 18 hm5C_associated_SNPs_8755 0 0 0 0 1 KAZALD1 chr10:102826305 5'GT 102826305 Upstream 70bp
chr10 102826237 102826237 1 + C A rs576643418 102826239 + 102826219 102826259 41 GCGGCCCTAGGAGCCGCGCACAACAGCGCAAGCGGGCTGGA GCGGCCCTAGGAGCCGCGAACAACAGCGCAAGCGGGCTGGA < 41bp 1 0.714722318526832 1 0.678903102874756 experiment 0.570555362946336 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KAZALD1 ENSG00000107821 downstream Human protein_coding chr10:102826239 chr10:102826237 . . 0 19 hm5C_associated_SNPs_8756 0 0 0 0 1 KAZALD1 chr10:102826305 5'GT 102826305 Upstream 69bp
chr10 103310574 103310574 1 + C A rs2270439 103310555 + 103310535 103310575 41 TCTGGGACTTCCTAAATGATCCAGCTGCCCAAGCTGAACCC TCTGGGACTTCCTAAATGATCCAGCTGCCCAAGCTGAACAC < 41bp 1 0.386147456508543 1 0.279950052499771 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BTRC ENSG00000166167 CDS Human protein_coding chr10:103310555 chr10:103310574 nonsynonymous SNV 0.885 2 40 hm5C_associated_SNPs_8757 0 0 0 0 1 BTRC chr10:103310648 5'GT 103310648 Upstream 75bp
chr10 103908217 103908217 1 + T C rs145965846 103908226 + 103908206 103908246 41 CATCCTCATCATCCAGTTCTCGAAGCCGCTCACGATCCCCA CATCCTCATCACCCAGTTCTCGAAGCCGCTCACGATCCCCA < 41bp 1 0.521592633821309 1 0.890246093273163 experiment 0.956814732357383 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103908226 chr10:103908217 nonsynonymous SNV 0.990 1 12 hm5C_associated_SNPs_8760 0 0 1 0 2 PPRC1 chr10:103908129 3'AG 103908129 Downstream 89bp
chr10 103908217 103908217 1 + T C rs145965846 103908226 + 103908206 103908246 41 CATCCTCATCATCCAGTTCTCGAAGCCGCTCACGATCCCCA CATCCTCATCACCCAGTTCTCGAAGCCGCTCACGATCCCCA < 41bp 1 0.521592633821309 1 0.890246093273163 experiment 0.956814732357383 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103908226 chr10:103908217 nonsynonymous SNV 0.990 1 12 hm5C_associated_SNPs_8760 0 0 1 0 2 PPRC1 chr10:103908278 5'GT 103908278 Upstream 62bp
chr10 103917969 103917969 1 + C T rs139248308 103917963 + 103917943 103917983 41 AGCTCAGACTAAAGCCCCTCCCAAACCAGGTACTGTTTCTG AGCTCAGACTAAAGCCCCTCCCAAACTAGGTACTGTTTCTG < 41bp 1 0.224297244429916 1 0.220056593418121 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103917963 chr10:103917969 nonsynonymous SNV 0.905 1 27 hm5C_associated_SNPs_8761 0 0 1 0 1 NOLC1 chr10:103917971 5'GT 103917971 Upstream 3bp
chr10 103919675 103919675 1 + G A rs112050395 103919665 + 103919645 103919685 41 TTAAACAGGTCCCTACAGTTCAGTCCCCCCGCCTTCTGCTC TTAAACAGGTCCCTACAGTTCAGTCCCCCCACCTTCTGCTC < 41bp 1 0.325803223465824 1 0.0851248204708099 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919665 chr10:103919675 synonymous SNV . 0 31 hm5C_associated_SNPs_8762 0 0 1 0 1 NOLC1 chr10:103919653 3'AG 103919653 Downstream 23bp
chr10 104140355 104140355 1 + C A rs112809254 104140373 + 104140353 104140393 41 CCCTCGGCCCTCTGGGAGATCACCTGGGAACGCATTGACTG CCATCGGCCCTCTGGGAGATCACCTGGGAACGCATTGACTG < 41bp 1 0.431959308163286 1 0.0505266785621643 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104140373 chr10:104140355 synonymous SNV . 0 3 hm5C_associated_SNPs_8764 0 0 0 0 1 GBF1 chr10:104140263 3'AG 104140263 Downstream 93bp
chr10 104159196 104159196 1 + A G rs4919633 104159194 + 104159174 104159214 41 CCGGGGAGGAAGCCGCGGAGCCAAGCGCCCCCTCCAGGACC CCGGGGAGGAAGCCGCGGAGCCGAGCGCCCCCTCCAGGACC < 41bp 1 0.515970183626667 1 0.300097972154617 experiment 0.968059632746666 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104159194 chr10:104159196 synonymous SNV . 0 23 hm5C_associated_SNPs_8765 1 0 0 0 1 NFKB2 chr10:104159254 5'GT 104159254 Upstream 59bp
chr10 104159196 104159196 1 + A G rs4919633 104159195 + 104159175 104159215 41 CGGGGAGGAAGCCGCGGAGCCAAGCGCCCCCTCCAGGACCC CGGGGAGGAAGCCGCGGAGCCGAGCGCCCCCTCCAGGACCC < 41bp 1 0.736969575817467 1 0.633188009262085 experiment 0.526060848365066 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104159195 chr10:104159196 synonymous SNV . 0 22 hm5C_associated_SNPs_8766 1 0 0 0 1 NFKB2 chr10:104159254 5'GT 104159254 Upstream 59bp
chr10 104160434 104160434 1 + A C rs4919634 104160433 + 104160413 104160453 41 ACTGTATCCAGTACACCTGGCAGTCCGAGCCCGAAGCCCTG ACTGTATCCAGTACACCTGGCCGTCCGAGCCCGAAGCCCTG < 41bp 1 0.0278060445360458 1 0.0597496330738068 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160433 chr10:104160434 synonymous SNV . 0 22 hm5C_associated_SNPs_8767 0 0 0 0 1 NFKB2 chr10:104160412 3'AG 104160412 Downstream 23bp
chr10 104160439 104160439 1 + G A rs200092317 104160433 + 104160413 104160453 41 ACTGTATCCAGTACACCTGGCAGTCCGAGCCCGAAGCCCTG ACTGTATCCAGTACACCTGGCAGTCCAAGCCCGAAGCCCTG < 41bp 1 0.075818008421073 1 0.169123589992523 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160433 chr10:104160439 nonsynonymous SNV 0.879 0 27 hm5C_associated_SNPs_8768 0 0 0 0 1 NFKB2 chr10:104160412 3'AG 104160412 Downstream 28bp
chr10 104181552 104181552 1 + G A rs200350493 104181566 + 104181546 104181586 41 GGGTCCGCAGATCCCGCGGGCCGCATTGGCCCGGCTGCTGC GGGTCCACAGATCCCGCGGGCCGCATTGGCCCGGCTGCTGC < 41bp 1 0.740140022163174 1 0.0995828211307526 experiment 0.519719955673652 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXL15 ENSG00000107872 CDS Human protein_coding chr10:104181566 chr10:104181552 synonymous SNV . 0 7 hm5C_associated_SNPs_8769 0 0 1 0 1 FBXL15 chr10:104181544 3'AG 104181544 Downstream 9bp
chr10 104181552 104181552 1 + G A rs200350493 104181567 + 104181547 104181587 41 GGTCCGCAGATCCCGCGGGCCGCATTGGCCCGGCTGCTGCG GGTCCACAGATCCCGCGGGCCGCATTGGCCCGGCTGCTGCG < 41bp 1 0.582833133435706 1 0.209132492542267 experiment 0.834333733128589 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXL15 ENSG00000107872 CDS Human protein_coding chr10:104181567 chr10:104181552 synonymous SNV . 0 6 hm5C_associated_SNPs_8770 0 0 1 0 1 FBXL15 chr10:104181544 3'AG 104181544 Downstream 9bp
chr10 104181578 104181578 1 + G A rs199729408 104181566 + 104181546 104181586 41 GGGTCCGCAGATCCCGCGGGCCGCATTGGCCCGGCTGCTGC GGGTCCGCAGATCCCGCGGGCCGCATTGGCCCAGCTGCTGC < 41bp 1 0.716217997721625 1 0.202861994504929 experiment 0.567564004556751 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXL15 ENSG00000107872 CDS Human protein_coding chr10:104181566 chr10:104181578 nonsynonymous SNV 0.533 0 33 hm5C_associated_SNPs_8771 0 0 1 0 1 FBXL15 chr10:104181544 3'AG 104181544 Downstream 35bp
chr10 104181578 104181578 1 + G A rs199729408 104181567 + 104181547 104181587 41 GGTCCGCAGATCCCGCGGGCCGCATTGGCCCGGCTGCTGCG GGTCCGCAGATCCCGCGGGCCGCATTGGCCCAGCTGCTGCG < 41bp 1 0.571278980895608 1 0.110635757446289 experiment 0.857442038208783 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXL15 ENSG00000107872 CDS Human protein_coding chr10:104181567 chr10:104181578 nonsynonymous SNV 0.533 0 32 hm5C_associated_SNPs_8772 0 0 1 0 1 FBXL15 chr10:104181544 3'AG 104181544 Downstream 35bp
chr10 104503829 104503829 1 + C T rs112090972 104503844 + 104503824 104503864 41 GGCTCCTGGGTGGCATGGCGCTCCTGCTCCTCCAGGCGCTG GGCTCTTGGGTGGCATGGCGCTCCTGCTCCTCCAGGCGCTG < 41bp 1 0.466030277651979 1 0.0699911117553711 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WBP1L ENSG00000166272 CDS Human protein_coding chr10:104503844 chr10:104503829 synonymous SNV . 0 6 hm5C_associated_SNPs_8781 0 0 1 0 1 WBP1L chr10:104503900 5'GT 104503900 Upstream 72bp
chr10 104503829 104503829 1 + C T rs112090972 104503846 + 104503826 104503866 41 CTCCTGGGTGGCATGGCGCTCCTGCTCCTCCAGGCGCTGCC CTCTTGGGTGGCATGGCGCTCCTGCTCCTCCAGGCGCTGCC < 41bp 1 0.165421725785576 1 0.332798272371292 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control WBP1L ENSG00000166272 CDS Human protein_coding chr10:104503846 chr10:104503829 synonymous SNV . 0 4 hm5C_associated_SNPs_8782 0 0 1 0 1 WBP1L chr10:104503900 5'GT 104503900 Upstream 72bp
chr10 104503829 104503829 1 + C T rs112090972 104503847 + 104503827 104503867 41 TCCTGGGTGGCATGGCGCTCCTGCTCCTCCAGGCGCTGCCC TCTTGGGTGGCATGGCGCTCCTGCTCCTCCAGGCGCTGCCC < 41bp 1 0.612567637013385 1 0.249153912067413 experiment 0.774864725973231 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control WBP1L ENSG00000166272 CDS Human protein_coding chr10:104503847 chr10:104503829 synonymous SNV . 0 3 hm5C_associated_SNPs_8783 0 0 1 0 1 WBP1L chr10:104503900 5'GT 104503900 Upstream 72bp
chr10 105203006 105203006 1 + C T rs148181718 105203022 + 105203002 105203042 41 AGGTCTTTGAGCGAGCCGTGCAGTACAACGAGCCTCTCAAA AGGTTTTTGAGCGAGCCGTGCAGTACAACGAGCCTCTCAAA < 41bp 1 0.260144087242074 1 0.872816562652588 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105203022 chr10:105203006 synonymous SNV . 0 5 hm5C_associated_SNPs_8789 0 0 1 0 2 PDCD11 chr10:105202922 3'AG 105202922 Downstream 85bp
chr10 105203006 105203006 1 + C T rs148181718 105203022 + 105203002 105203042 41 AGGTCTTTGAGCGAGCCGTGCAGTACAACGAGCCTCTCAAA AGGTTTTTGAGCGAGCCGTGCAGTACAACGAGCCTCTCAAA < 41bp 1 0.260144087242074 1 0.872816562652588 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105203022 chr10:105203006 synonymous SNV . 0 5 hm5C_associated_SNPs_8789 0 0 1 0 2 PDCD11 chr10:105203090 5'GT 105203090 Upstream 85bp
chr10 105203030 105203030 1 + C T rs371227965 105203022 + 105203002 105203042 41 AGGTCTTTGAGCGAGCCGTGCAGTACAACGAGCCTCTCAAA AGGTCTTTGAGCGAGCCGTGCAGTACAATGAGCCTCTCAAA < 41bp 1 0.257300389698406 1 0.804027318954468 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105203022 chr10:105203030 synonymous SNV . 0 29 hm5C_associated_SNPs_8790 0 0 1 0 1 PDCD11 chr10:105203090 5'GT 105203090 Upstream 61bp
chr10 106014235 106014235 1 + T A rs17881389 106014255 + 106014235 106014275 41 TTTGGAGAGAACGCTCTGGACCGGTGAGTGAGCCATGAGGT ATTGGAGAGAACGCTCTGGACCGGTGAGTGAGCCATGAGGT < 41bp 1 0.62541403098896 1 0.239732801914215 experiment 0.749171938022079 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GSTO1 ENSG00000148834 UTR5 Human protein_coding chr10:106014255 chr10:106014235 . . 0 1 hm5C_associated_SNPs_8794 0 0 0 0 1 GSTO1 chr10:106014257 5'GT 106014257 Upstream 23bp
chr10 112361870 112361870 1 + A G rs2419565 112361869 + 112361849 112361889 41 GTTAGATAGGGGTTACAAATCAATCATGGAACTGATGAATG GTTAGATAGGGGTTACAAATCGATCATGGAACTGATGAATG < 41bp 1 0.326963104589173 1 0.207907795906067 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMC3 ENSG00000108055 CDS Human protein_coding chr10:112361869 chr10:112361870 synonymous SNV . 0 22 hm5C_associated_SNPs_8800 2 0 1 0 1 SMC3 chr10:112361936 5'GT 112361936 Upstream 67bp
chr10 114711293 114711293 1 + A C rs569153544 114711291 + 114711271 114711311 41 AAGGGGCCACCGTATCCCGGCTACCCCTTCATCATGATCCC AAGGGGCCACCGTATCCCGGCTCCCCCTTCATCATGATCCC < 41bp 1 0.428348017411432 1 0.0718978345394135 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114711291 chr10:114711293 nonsynonymous SNV 0.990 2 23 hm5C_associated_SNPs_8801 0 0 1 0 2 TCF7L2 chr10:114711242 3'AG 114711242 Downstream 52bp
chr10 114711293 114711293 1 + A C rs569153544 114711291 + 114711271 114711311 41 AAGGGGCCACCGTATCCCGGCTACCCCTTCATCATGATCCC AAGGGGCCACCGTATCCCGGCTCCCCCTTCATCATGATCCC < 41bp 1 0.428348017411432 1 0.0718978345394135 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114711291 chr10:114711293 nonsynonymous SNV 0.990 2 23 hm5C_associated_SNPs_8801 0 0 1 0 2 TCF7L2 chr10:114711366 5'GT 114711366 Upstream 74bp
chr10 115485158 115485158 1 + C T rs537094698 115485145 + 115485125 115485165 41 TGAAGAGGACCATACAAATGCCGCCTGCTTCGCCTGCATCC TGAAGAGGACCATACAAATGCCGCCTGCTTCGCTTGCATCC < 41bp 1 0.234327236910998 1 0.250596910715103 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115485145 chr10:115485158 synonymous SNV . 0 34 hm5C_associated_SNPs_8802 0 0 1 0 2 CASP7 chr10:115485121 3'AG 115485121 Downstream 38bp
chr10 115485158 115485158 1 + C T rs537094698 115485145 + 115485125 115485165 41 TGAAGAGGACCATACAAATGCCGCCTGCTTCGCCTGCATCC TGAAGAGGACCATACAAATGCCGCCTGCTTCGCTTGCATCC < 41bp 1 0.234327236910998 1 0.250596910715103 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115485145 chr10:115485158 synonymous SNV . 0 34 hm5C_associated_SNPs_8802 0 0 1 0 2 CASP7 chr10:115485188 5'GT 115485188 Upstream 31bp
chr10 118306823 118306823 1 + G A rs568629341 118306831 + 118306811 118306851 41 GAAGTTTGCTACGAAAGACTCGGCTGCTTCAGTGATGACTC GAAGTTTGCTACAAAAGACTCGGCTGCTTCAGTGATGACTC < 41bp 1 0.636034137815821 1 0.147736430168152 experiment 0.727931724368358 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306831 chr10:118306823 nonsynonymous SNV 0.478 1 13 hm5C_associated_SNPs_8809 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 18bp
chr10 118306855 118306855 1 + A C rs76246039 118306849 + 118306829 118306869 41 CTCGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTAC CTCGGCTGCTTCAGTGATGACTCCCCCTGGTCAGGAATTAC < 41bp 1 0.279522546751616 1 0.10185906291008 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306849 chr10:118306855 synonymous SNV . 0 27 hm5C_associated_SNPs_8810 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 50bp
chr10 118306855 118306855 1 + A C rs76246039 118306851 + 118306831 118306871 41 CGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGG CGGCTGCTTCAGTGATGACTCCCCCTGGTCAGGAATTACGG < 41bp 1 0.28329594041177 1 0.0655821859836578 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306851 chr10:118306855 synonymous SNV . 0 25 hm5C_associated_SNPs_8811 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 50bp
chr10 118306855 118306855 1 + A C rs76246039 118306853 + 118306833 118306873 41 GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAA GCTGCTTCAGTGATGACTCCCCCTGGTCAGGAATTACGGAA < 41bp 1 0.33412336784323 1 0.148085832595825 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306853 chr10:118306855 synonymous SNV . 0 23 hm5C_associated_SNPs_8812 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 50bp
chr10 118306855 118306855 1 + A C rs76246039 118306854 + 118306834 118306874 41 CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAAA CTGCTTCAGTGATGACTCCCCCTGGTCAGGAATTACGGAAA < 41bp 1 0.289631060713543 1 0.634501397609711 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306854 chr10:118306855 synonymous SNV . 0 22 hm5C_associated_SNPs_8813 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 50bp
chr10 118313336 118313336 1 + T C rs78536862 118313333 + 118313313 118313353 41 TGGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTT TGGAAGGAGAACCAATGGGACCACTGGACGCATCACAGGTT < 41bp 1 0.261520144373342 1 0.0713744163513184 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313333 chr10:118313336 nonsynonymous SNV 0.013 2 24 hm5C_associated_SNPs_8814 0 0 0 0 2 PNLIP chr10:118313239 3'AG 118313239 Downstream 98bp
chr10 118313336 118313336 1 + T C rs78536862 118313333 + 118313313 118313353 41 TGGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTT TGGAAGGAGAACCAATGGGACCACTGGACGCATCACAGGTT < 41bp 1 0.261520144373342 1 0.0713744163513184 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313333 chr10:118313336 nonsynonymous SNV 0.013 2 24 hm5C_associated_SNPs_8814 0 0 0 0 2 PNLIP chr10:118313350 5'GT 118313350 Upstream 15bp
chr10 118313336 118313336 1 + T C rs78536862 118313334 + 118313314 118313354 41 GGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTTG GGAAGGAGAACCAATGGGACCACTGGACGCATCACAGGTTG < 41bp 1 0.728069272736214 1 0.187228292226791 experiment 0.543861454527571 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313334 chr10:118313336 nonsynonymous SNV 0.013 2 23 hm5C_associated_SNPs_8815 0 0 0 0 2 PNLIP chr10:118313239 3'AG 118313239 Downstream 98bp
chr10 118313336 118313336 1 + T C rs78536862 118313334 + 118313314 118313354 41 GGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTTG GGAAGGAGAACCAATGGGACCACTGGACGCATCACAGGTTG < 41bp 1 0.728069272736214 1 0.187228292226791 experiment 0.543861454527571 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313334 chr10:118313336 nonsynonymous SNV 0.013 2 23 hm5C_associated_SNPs_8815 0 0 0 0 2 PNLIP chr10:118313350 5'GT 118313350 Upstream 15bp
chr10 118318719 118318719 1 + T C rs78085802 118318713 + 118318693 118318733 41 GGCTGCCCACAGATGGGTCACTATGCTGATAGATATCCTGG GGCTGCCCACAGATGGGTCACTATGCCGATAGATATCCTGG < 41bp 1 0.257752749214041 1 0.055755078792572 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318713 chr10:118318719 synonymous SNV . 0 27 hm5C_associated_SNPs_8819 0 0 0 0 2 PNLIP chr10:118318666 3'AG 118318666 Downstream 54bp
chr10 118318719 118318719 1 + T C rs78085802 118318713 + 118318693 118318733 41 GGCTGCCCACAGATGGGTCACTATGCTGATAGATATCCTGG GGCTGCCCACAGATGGGTCACTATGCCGATAGATATCCTGG < 41bp 1 0.257752749214041 1 0.055755078792572 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318713 chr10:118318719 synonymous SNV . 0 27 hm5C_associated_SNPs_8819 0 0 0 0 2 PNLIP chr10:118318795 5'GT 118318795 Upstream 77bp
chr10 118318719 118318719 1 + T C rs78085802 118318718 + 118318698 118318738 41 CCCACAGATGGGTCACTATGCTGATAGATATCCTGGGAAAA CCCACAGATGGGTCACTATGCCGATAGATATCCTGGGAAAA < 41bp 1 0.281633450444437 1 0.297964453697205 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318718 chr10:118318719 synonymous SNV . 0 22 hm5C_associated_SNPs_8820 0 0 0 0 2 PNLIP chr10:118318666 3'AG 118318666 Downstream 54bp
chr10 118318719 118318719 1 + T C rs78085802 118318718 + 118318698 118318738 41 CCCACAGATGGGTCACTATGCTGATAGATATCCTGGGAAAA CCCACAGATGGGTCACTATGCCGATAGATATCCTGGGAAAA < 41bp 1 0.281633450444437 1 0.297964453697205 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318718 chr10:118318719 synonymous SNV . 0 22 hm5C_associated_SNPs_8820 0 0 0 0 2 PNLIP chr10:118318795 5'GT 118318795 Upstream 77bp
chr10 118318719 118318719 1 + T C rs78085802 118318729 + 118318709 118318749 41 GTCACTATGCTGATAGATATCCTGGGAAAACAAATGATGTG GTCACTATGCCGATAGATATCCTGGGAAAACAAATGATGTG < 41bp 1 0.571519394467631 1 0.476272165775299 experiment 0.856961211064738 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318729 chr10:118318719 synonymous SNV . 0 11 hm5C_associated_SNPs_8821 0 0 0 0 2 PNLIP chr10:118318666 3'AG 118318666 Downstream 54bp
chr10 118318719 118318719 1 + T C rs78085802 118318729 + 118318709 118318749 41 GTCACTATGCTGATAGATATCCTGGGAAAACAAATGATGTG GTCACTATGCCGATAGATATCCTGGGAAAACAAATGATGTG < 41bp 1 0.571519394467631 1 0.476272165775299 experiment 0.856961211064738 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318729 chr10:118318719 synonymous SNV . 0 11 hm5C_associated_SNPs_8821 0 0 0 0 2 PNLIP chr10:118318795 5'GT 118318795 Upstream 77bp
chr10 126150523 126150523 1 + C A rs75426652 126150526 + 126150506 126150546 41 CGGCGCGGGCGGCGGCACGGCCATCGCCGGCTCGGTGGAGG CGGCGCGGGCGGCGGCAAGGCCATCGCCGGCTCGGTGGAGG < 41bp 1 0.147892664755856 1 0.36604979634285 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LHPP ENSG00000107902 CDS Human protein_coding chr10:126150526 chr10:126150523 nonsynonymous SNV 0.000 0 18 hm5C_associated_SNPs_8824 0 0 1 0 1 LHPP chr10:126150556 5'GT 126150556 Upstream 34bp
chr10 126150523 126150523 1 + C A rs75426652 126150527 + 126150507 126150547 41 GGCGCGGGCGGCGGCACGGCCATCGCCGGCTCGGTGGAGGC GGCGCGGGCGGCGGCAAGGCCATCGCCGGCTCGGTGGAGGC < 41bp 1 0.617817255690165 1 0.427058607339859 experiment 0.764365488619671 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LHPP ENSG00000107902 CDS Human protein_coding chr10:126150527 chr10:126150523 nonsynonymous SNV 0.000 0 17 hm5C_associated_SNPs_8825 0 0 1 0 1 LHPP chr10:126150556 5'GT 126150556 Upstream 34bp
chr10 126150523 126150523 1 + C A rs75426652 126150532 + 126150512 126150552 41 GGGCGGCGGCACGGCCATCGCCGGCTCGGTGGAGGCGGTGG GGGCGGCGGCAAGGCCATCGCCGGCTCGGTGGAGGCGGTGG < 41bp 1 0.769970287575166 1 0.537220001220703 experiment 0.460059424849669 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LHPP ENSG00000107902 CDS Human protein_coding chr10:126150532 chr10:126150523 nonsynonymous SNV 0.000 0 12 hm5C_associated_SNPs_8826 0 0 1 0 1 LHPP chr10:126150556 5'GT 126150556 Upstream 34bp
chr10 126150523 126150523 1 + C A rs75426652 126150533 + 126150513 126150553 41 GGCGGCGGCACGGCCATCGCCGGCTCGGTGGAGGCGGTGGC GGCGGCGGCAAGGCCATCGCCGGCTCGGTGGAGGCGGTGGC < 41bp 1 0.758984473620914 1 0.463297963142395 experiment 0.482031052758173 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LHPP ENSG00000107902 CDS Human protein_coding chr10:126150533 chr10:126150523 nonsynonymous SNV 0.000 0 11 hm5C_associated_SNPs_8827 0 0 1 0 1 LHPP chr10:126150556 5'GT 126150556 Upstream 34bp
chr10 126205767 126205767 1 + G A rs140823928 126205754 + 126205734 126205774 41 TCACTGCCGTGACAGGCCGTCATGATTGGGGACGATATCGT TCACTGCCGTGACAGGCCGTCATGATTGGGGACAATATCGT < 41bp 1 0.490417833731059 1 0.176203012466431 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LHPP ENSG00000107902 CDS Human protein_coding chr10:126205754 chr10:126205767 nonsynonymous SNV 0.995 4 34 hm5C_associated_SNPs_8828 0 0 0 0 2 LHPP chr10:126205749 3'AG 126205749 Downstream 19bp
chr10 126205767 126205767 1 + G A rs140823928 126205754 + 126205734 126205774 41 TCACTGCCGTGACAGGCCGTCATGATTGGGGACGATATCGT TCACTGCCGTGACAGGCCGTCATGATTGGGGACAATATCGT < 41bp 1 0.490417833731059 1 0.176203012466431 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LHPP ENSG00000107902 CDS Human protein_coding chr10:126205754 chr10:126205767 nonsynonymous SNV 0.995 4 34 hm5C_associated_SNPs_8828 0 0 0 0 2 LHPP chr10:126205840 5'GT 126205840 Upstream 74bp
chr10 129141927 129141927 1 + T C rs34034225 129141910 + 129141890 129141930 41 TCCTCCTTTTTGGTTTTCAGCTGTGGAACAACTACTTTCAC TCCTCCTTTTTGGTTTTCAGCTGTGGAACAACTACTTCCAC < 41bp 1 0.128482407484147 1 0.35990247130394 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141910 chr10:129141927 synonymous SNV . 0 38 hm5C_associated_SNPs_8831 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 18bp
chr10 129141927 129141927 1 + T C rs34034225 129141910 + 129141890 129141930 41 TCCTCCTTTTTGGTTTTCAGCTGTGGAACAACTACTTTCAC TCCTCCTTTTTGGTTTTCAGCTGTGGAACAACTACTTCCAC < 41bp 1 0.128482407484147 1 0.35990247130394 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141910 chr10:129141927 synonymous SNV . 0 38 hm5C_associated_SNPs_8831 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 84bp
chr10 129141927 129141927 1 + T C rs34034225 129141918 + 129141898 129141938 41 TTTGGTTTTCAGCTGTGGAACAACTACTTTCACCTGGCTGT TTTGGTTTTCAGCTGTGGAACAACTACTTCCACCTGGCTGT < 41bp 1 0.137361089441621 1 0.120416313409805 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141918 chr10:129141927 synonymous SNV . 0 30 hm5C_associated_SNPs_8832 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 18bp
chr10 129141927 129141927 1 + T C rs34034225 129141918 + 129141898 129141938 41 TTTGGTTTTCAGCTGTGGAACAACTACTTTCACCTGGCTGT TTTGGTTTTCAGCTGTGGAACAACTACTTCCACCTGGCTGT < 41bp 1 0.137361089441621 1 0.120416313409805 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141918 chr10:129141927 synonymous SNV . 0 30 hm5C_associated_SNPs_8832 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 84bp
chr10 129141927 129141927 1 + T C rs34034225 129141921 + 129141901 129141941 41 GGTTTTCAGCTGTGGAACAACTACTTTCACCTGGCTGTTGC GGTTTTCAGCTGTGGAACAACTACTTCCACCTGGCTGTTGC < 41bp 1 0.241181129408153 1 0.0962528884410858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141921 chr10:129141927 synonymous SNV . 0 27 hm5C_associated_SNPs_8833 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 18bp
chr10 129141927 129141927 1 + T C rs34034225 129141921 + 129141901 129141941 41 GGTTTTCAGCTGTGGAACAACTACTTTCACCTGGCTGTTGC GGTTTTCAGCTGTGGAACAACTACTTCCACCTGGCTGTTGC < 41bp 1 0.241181129408153 1 0.0962528884410858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141921 chr10:129141927 synonymous SNV . 0 27 hm5C_associated_SNPs_8833 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 84bp
chr10 129141927 129141927 1 + T C rs34034225 129141924 + 129141904 129141944 41 TTTCAGCTGTGGAACAACTACTTTCACCTGGCTGTTGCTTT TTTCAGCTGTGGAACAACTACTTCCACCTGGCTGTTGCTTT < 41bp 1 0.0545219399403995 1 0.0779949128627777 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141924 chr10:129141927 synonymous SNV . 0 24 hm5C_associated_SNPs_8834 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 18bp
chr10 129141927 129141927 1 + T C rs34034225 129141924 + 129141904 129141944 41 TTTCAGCTGTGGAACAACTACTTTCACCTGGCTGTTGCTTT TTTCAGCTGTGGAACAACTACTTCCACCTGGCTGTTGCTTT < 41bp 1 0.0545219399403995 1 0.0779949128627777 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141924 chr10:129141927 synonymous SNV . 0 24 hm5C_associated_SNPs_8834 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 84bp
chr10 129141927 129141927 1 + T C rs34034225 129141930 + 129141910 129141950 41 CTGTGGAACAACTACTTTCACCTGGCTGTTGCTTTCCTTAC CTGTGGAACAACTACTTCCACCTGGCTGTTGCTTTCCTTAC < 41bp 1 0.115162130734823 1 0.282436043024063 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141930 chr10:129141927 synonymous SNV . 0 18 hm5C_associated_SNPs_8835 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 18bp
chr10 129141927 129141927 1 + T C rs34034225 129141930 + 129141910 129141950 41 CTGTGGAACAACTACTTTCACCTGGCTGTTGCTTTCCTTAC CTGTGGAACAACTACTTCCACCTGGCTGTTGCTTTCCTTAC < 41bp 1 0.115162130734823 1 0.282436043024063 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141930 chr10:129141927 synonymous SNV . 0 18 hm5C_associated_SNPs_8835 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 84bp
chr10 129141927 129141927 1 + T C rs34034225 129141931 + 129141911 129141951 41 TGTGGAACAACTACTTTCACCTGGCTGTTGCTTTCCTTACT TGTGGAACAACTACTTCCACCTGGCTGTTGCTTTCCTTACT < 41bp 1 0.200605790767293 1 0.445858418941498 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141931 chr10:129141927 synonymous SNV . 0 17 hm5C_associated_SNPs_8836 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 18bp
chr10 129141927 129141927 1 + T C rs34034225 129141931 + 129141911 129141951 41 TGTGGAACAACTACTTTCACCTGGCTGTTGCTTTCCTTACT TGTGGAACAACTACTTCCACCTGGCTGTTGCTTTCCTTACT < 41bp 1 0.200605790767293 1 0.445858418941498 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141931 chr10:129141927 synonymous SNV . 0 17 hm5C_associated_SNPs_8836 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 84bp
chr10 129141927 129141927 1 + T C rs34034225 129141935 + 129141915 129141955 41 GAACAACTACTTTCACCTGGCTGTTGCTTTCCTTACTCAAG GAACAACTACTTCCACCTGGCTGTTGCTTTCCTTACTCAAG < 41bp 1 0.0478910148226908 1 0.086941123008728 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141935 chr10:129141927 synonymous SNV . 0 13 hm5C_associated_SNPs_8837 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 18bp
chr10 129141927 129141927 1 + T C rs34034225 129141935 + 129141915 129141955 41 GAACAACTACTTTCACCTGGCTGTTGCTTTCCTTACTCAAG GAACAACTACTTCCACCTGGCTGTTGCTTTCCTTACTCAAG < 41bp 1 0.0478910148226908 1 0.086941123008728 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141935 chr10:129141927 synonymous SNV . 0 13 hm5C_associated_SNPs_8837 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 84bp
chr10 129141927 129141927 1 + T C rs34034225 129141941 + 129141921 129141961 41 CTACTTTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCC CTACTTCCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCC < 41bp 1 0.0121376142114085 1 0.0784865915775299 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141941 chr10:129141927 synonymous SNV . 0 7 hm5C_associated_SNPs_8838 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 18bp
chr10 129141927 129141927 1 + T C rs34034225 129141941 + 129141921 129141961 41 CTACTTTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCC CTACTTCCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCC < 41bp 1 0.0121376142114085 1 0.0784865915775299 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141941 chr10:129141927 synonymous SNV . 0 7 hm5C_associated_SNPs_8838 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 84bp
chr10 129141927 129141927 1 + T C rs34034225 129141945 + 129141925 129141965 41 TTTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCA TTCCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCA < 41bp 1 0.0777435457714636 1 0.0390929579734802 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141945 chr10:129141927 synonymous SNV . 0 3 hm5C_associated_SNPs_8839 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 18bp
chr10 129141927 129141927 1 + T C rs34034225 129141945 + 129141925 129141965 41 TTTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCA TTCCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCA < 41bp 1 0.0777435457714636 1 0.0390929579734802 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141945 chr10:129141927 synonymous SNV . 0 3 hm5C_associated_SNPs_8839 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 84bp
chr10 129141927 129141927 1 + T C rs34034225 129141946 + 129141926 129141966 41 TTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCAA TCCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCAA < 41bp 1 0.0761886181281068 1 0.0710353255271912 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141946 chr10:129141927 synonymous SNV . 0 2 hm5C_associated_SNPs_8840 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 18bp
chr10 129141927 129141927 1 + T C rs34034225 129141946 + 129141926 129141966 41 TTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCAA TCCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCAA < 41bp 1 0.0761886181281068 1 0.0710353255271912 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141946 chr10:129141927 synonymous SNV . 0 2 hm5C_associated_SNPs_8840 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 84bp
chr10 131978449 131978449 1 + G A rs186745175 131978465 + 131978445 131978485 41 TCTCGGGGCCAAGCGATCCTCCTGCCTCAGCCTTCTGAGTA TCTCAGGGCCAAGCGATCCTCCTGCCTCAGCCTTCTGAGTA < 41bp 1 0.339001199476404 1 0.0791118741035461 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLRX3 ENSG00000108010 UTR3 Human protein_coding chr10:131978465 chr10:131978449 . . 0 5 hm5C_associated_SNPs_8841 0 0 1 0 1 GLRX3 chr10:131978377 3'AG 131978377 Downstream 73bp
chr10 131978449 131978449 1 + G A rs186745175 131978466 + 131978446 131978486 41 CTCGGGGCCAAGCGATCCTCCTGCCTCAGCCTTCTGAGTAG CTCAGGGCCAAGCGATCCTCCTGCCTCAGCCTTCTGAGTAG < 41bp 1 0.606233482510177 1 0.143074959516525 experiment 0.787533034979645 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLRX3 ENSG00000108010 UTR3 Human protein_coding chr10:131978466 chr10:131978449 . . 0 4 hm5C_associated_SNPs_8842 0 0 1 0 1 GLRX3 chr10:131978377 3'AG 131978377 Downstream 73bp
chr10 131978449 131978449 1 + G A rs186745175 131978469 + 131978449 131978489 41 GGGGCCAAGCGATCCTCCTGCCTCAGCCTTCTGAGTAGCTG AGGGCCAAGCGATCCTCCTGCCTCAGCCTTCTGAGTAGCTG < 41bp 1 0.311011768020611 1 0.0689663589000702 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLRX3 ENSG00000108010 UTR3 Human protein_coding chr10:131978469 chr10:131978449 . . 0 1 hm5C_associated_SNPs_8843 0 0 1 0 1 GLRX3 chr10:131978377 3'AG 131978377 Downstream 73bp
chr10 135122507 135122507 1 + G A rs3008357 135122505 + 135122485 135122525 41 CGGGGCCCGGGGCGGCGGAGCCGCTGCCTGTAGAGCGGGAT CGGGGCCCGGGGCGGCGGAGCCACTGCCTGTAGAGCGGGAT < 41bp 1 0.355523150211584 1 0.443297833204269 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF511 ENSG00000198546 CDS Human protein_coding chr10:135122505 chr10:135122507 synonymous SNV . 0 23 hm5C_associated_SNPs_8848 0 0 1 0 1 ZNF511 chr10:135122600 5'GT 135122600 Upstream 94bp
chr10 135122507 135122507 1 + G A rs3008357 135122508 + 135122488 135122528 41 GGCCCGGGGCGGCGGAGCCGCTGCCTGTAGAGCGGGATCCC GGCCCGGGGCGGCGGAGCCACTGCCTGTAGAGCGGGATCCC < 41bp 1 0.791924014894196 1 0.389325499534607 experiment 0.416151970211608 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF511 ENSG00000198546 CDS Human protein_coding chr10:135122508 chr10:135122507 synonymous SNV . 0 20 hm5C_associated_SNPs_8849 0 0 1 0 1 ZNF511 chr10:135122600 5'GT 135122600 Upstream 94bp
chr10 135209682 135209682 1 + C T rs148997160 135209670 + 135209650 135209690 41 TACCTTAATTTTGCCACATCCCACTTTCAGGCCGCAACCCT TACCTTAATTTTGCCACATCCCACTTTCAGGCTGCAACCCT < 41bp 1 0.0854944091684175 1 0.0433690547943115 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTG1 ENSG00000148824;ENSG00000254536 CDS Human other chr10:135209670 chr10:135209682 nonsynonymous SNV 0.995 3 33 hm5C_associated_SNPs_8850 0 0 1 0 1 MTG1 chr10:135209771 5'GT 135209771 Upstream 90bp
chr10 135209689 135209689 1 + C G rs190130537 135209670 + 135209650 135209690 41 TACCTTAATTTTGCCACATCCCACTTTCAGGCCGCAACCCT TACCTTAATTTTGCCACATCCCACTTTCAGGCCGCAACCGT < 41bp 1 0.0840386890236458 1 0.0513400435447693 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTG1 ENSG00000148824;ENSG00000254536 CDS Human other chr10:135209670 chr10:135209689 nonsynonymous SNV 0.998 3 40 hm5C_associated_SNPs_8851 0 0 1 0 1 MTG1 chr10:135209771 5'GT 135209771 Upstream 83bp
chr10 135233541 135233541 1 + A G rs2255246 135233540 + 135233520 135233560 41 CGTCCCCCAGGTAACGTGAACATTATTCAGCCTAACTATCC CGTCCCCCAGGTAACGTGAACGTTATTCAGCCTAACTATCC < 41bp 1 0.230059690991297 1 0.0145511627197266 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTG1 ENSG00000148824;ENSG00000254536 CDS Human other chr10:135233540 chr10:135233541 nonsynonymous SNV 0.023 0 22 hm5C_associated_SNPs_8852 0 0 1 0 1 MTG1 chr10:135233530 3'AG 135233530 Downstream 12bp
chr11 314323 314323 1 + T C rs12432 314324 + 314304 314344 41 TCTTCTTGAACTGGTGCTGTCTGGGCTTCATAGCATTCGCC TCTTCTTGAACTGGTGCTGCCTGGGCTTCATAGCATTCGCC < 41bp 1 0.76761548157385 1 0.136760205030441 experiment 0.4647690368523 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control IFITM1 ENSG00000185885 CDS Human protein_coding chr11:314324 chr11:314323 synonymous SNV . 0 20 hm5C_associated_SNPs_8869 0 0 1 0 1 IFITM1 chr11:314356 5'GT 314356 Upstream 34bp
chr11 403980 403980 1 + G A rs11748 403978 + 403958 403998 41 GCCACCTGATCGAGAAGCTGCCGGGCAGCGTGGGTGAGAAG GCCACCTGATCGAGAAGCTGCCAGGCAGCGTGGGTGAGAAG < 41bp 1 0.181740937299285 1 0.0707011520862579 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKP3 ENSG00000184363 CDS Human protein_coding chr11:403978 chr11:403980 synonymous SNV . 0 23 hm5C_associated_SNPs_8870 0 0 1 0 1 PKP3 chr11:403943 3'AG 403943 Downstream 38bp
chr11 403980 403980 1 + G A rs11748 403979 + 403959 403999 41 CCACCTGATCGAGAAGCTGCCGGGCAGCGTGGGTGAGAAGT CCACCTGATCGAGAAGCTGCCAGGCAGCGTGGGTGAGAAGT < 41bp 1 0.298692348536355 1 0.2673559486866 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKP3 ENSG00000184363 CDS Human protein_coding chr11:403979 chr11:403980 synonymous SNV . 0 22 hm5C_associated_SNPs_8871 0 0 1 0 1 PKP3 chr11:403943 3'AG 403943 Downstream 38bp
chr11 561014 561014 1 + C G rs544432445 561027 + 561007 561047 41 CGGGTCTCCAGGCTGGCGAGCGCCCAGGTGAGCCGCGCCGG CGGGTCTGCAGGCTGGCGAGCGCCCAGGTGAGCCGCGCCGG < 41bp 1 0.60362035890923 1 0.158464223146439 experiment 0.792759282181541 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RASSF7 ENSG00000099849 UTR5 Human protein_coding chr11:561027 chr11:561014 . . 0 8 hm5C_associated_SNPs_8879 0 0 1 0 1 RASSF7 chr11:561033 5'GT 561033 Upstream 20bp
chr11 561026 561026 1 + G A rs183456713 561027 + 561007 561047 41 CGGGTCTCCAGGCTGGCGAGCGCCCAGGTGAGCCGCGCCGG CGGGTCTCCAGGCTGGCGAACGCCCAGGTGAGCCGCGCCGG < 41bp 1 0.570315633585974 1 0.237150758504868 experiment 0.859368732828053 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RASSF7 ENSG00000099849 UTR5 Human protein_coding chr11:561027 chr11:561026 . . 0 20 hm5C_associated_SNPs_8880 0 0 1 0 1 RASSF7 chr11:561033 5'GT 561033 Upstream 8bp
chr11 610277 610277 1 + T C rs11246212 610293 + 610273 610313 41 CAGGTGTTCTCCGAGCTGCCCTTTCCCAGTCACGTGCTTCC CAGGCGTTCTCCGAGCTGCCCTTTCCCAGTCACGTGCTTCC < 41bp 1 0.0286705506243678 1 0.0244758725166321 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:610293 chr11:610277 nonsynonymous SNV 0.000 0 5 hm5C_associated_SNPs_8882 0 0 1 0 2 PHRF1 chr11:610196 3'AG 610196 Downstream 82bp
chr11 610277 610277 1 + T C rs11246212 610293 + 610273 610313 41 CAGGTGTTCTCCGAGCTGCCCTTTCCCAGTCACGTGCTTCC CAGGCGTTCTCCGAGCTGCCCTTTCCCAGTCACGTGCTTCC < 41bp 1 0.0286705506243678 1 0.0244758725166321 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:610293 chr11:610277 nonsynonymous SNV 0.000 0 5 hm5C_associated_SNPs_8882 0 0 1 0 2 PHRF1 chr11:610347 5'GT 610347 Upstream 71bp
chr11 610300 610300 1 + A G rs201244128 610293 + 610273 610313 41 CAGGTGTTCTCCGAGCTGCCCTTTCCCAGTCACGTGCTTCC CAGGTGTTCTCCGAGCTGCCCTTTCCCGGTCACGTGCTTCC < 41bp 1 0.029472978544876 1 0.0159706175327301 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:610293 chr11:610300 nonsynonymous SNV 0.001 0 28 hm5C_associated_SNPs_8883 0 0 1 0 1 PHRF1 chr11:610347 5'GT 610347 Upstream 48bp
chr11 810000 810000 1 + C T rs557149339 810012 + 809992 810032 41 GTCGCACGCGTGAGACTTCTCCGCCGCCTCCGCCGCAGACG GTCGCACGTGTGAGACTTCTCCGCCGCCTCCGCCGCAGACG < 41bp 1 0.472187808429113 1 0.262076109647751 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPLP2 ENSG00000177600 UTR5 Human protein_coding chr11:810012 chr11:810000 . . 0 9 hm5C_associated_SNPs_8890 0 0 1 0 1 RPLP2 chr11:810039 5'GT 810039 Upstream 40bp
chr11 810000 810000 1 + C T rs557149339 810013 + 809993 810033 41 TCGCACGCGTGAGACTTCTCCGCCGCCTCCGCCGCAGACGC TCGCACGTGTGAGACTTCTCCGCCGCCTCCGCCGCAGACGC < 41bp 1 0.689842852310438 1 0.491534322500229 experiment 0.620314295379124 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPLP2 ENSG00000177600 UTR5 Human protein_coding chr11:810013 chr11:810000 . . 0 8 hm5C_associated_SNPs_8891 0 0 1 0 1 RPLP2 chr11:810039 5'GT 810039 Upstream 40bp
chr11 810000 810000 1 + C T rs557149339 810015 + 809995 810035 41 GCACGCGTGAGACTTCTCCGCCGCCTCCGCCGCAGACGCCG GCACGTGTGAGACTTCTCCGCCGCCTCCGCCGCAGACGCCG < 41bp 1 0.376603977804364 1 0.112392485141754 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPLP2 ENSG00000177600 UTR5 Human protein_coding chr11:810015 chr11:810000 . . 0 6 hm5C_associated_SNPs_8892 0 0 1 0 1 RPLP2 chr11:810039 5'GT 810039 Upstream 40bp
chr11 810006 810006 1 + A G rs187202824 810012 + 809992 810032 41 GTCGCACGCGTGAGACTTCTCCGCCGCCTCCGCCGCAGACG GTCGCACGCGTGAGGCTTCTCCGCCGCCTCCGCCGCAGACG < 41bp 1 0.483271438480952 1 0.351424396038055 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPLP2 ENSG00000177600 UTR5 Human protein_coding chr11:810012 chr11:810006 . . 0 15 hm5C_associated_SNPs_8893 0 0 1 0 1 RPLP2 chr11:810039 5'GT 810039 Upstream 34bp
chr11 810006 810006 1 + A G rs187202824 810013 + 809993 810033 41 TCGCACGCGTGAGACTTCTCCGCCGCCTCCGCCGCAGACGC TCGCACGCGTGAGGCTTCTCCGCCGCCTCCGCCGCAGACGC < 41bp 1 0.722841866453609 1 0.424817740917206 experiment 0.554316267092781 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPLP2 ENSG00000177600 UTR5 Human protein_coding chr11:810013 chr11:810006 . . 0 14 hm5C_associated_SNPs_8894 0 0 1 0 1 RPLP2 chr11:810039 5'GT 810039 Upstream 34bp
chr11 810006 810006 1 + A G rs187202824 810015 + 809995 810035 41 GCACGCGTGAGACTTCTCCGCCGCCTCCGCCGCAGACGCCG GCACGCGTGAGGCTTCTCCGCCGCCTCCGCCGCAGACGCCG < 41bp 1 0.414175294285113 1 0.154796749353409 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPLP2 ENSG00000177600 UTR5 Human protein_coding chr11:810015 chr11:810006 . . 0 12 hm5C_associated_SNPs_8895 0 0 1 0 1 RPLP2 chr11:810039 5'GT 810039 Upstream 34bp
chr11 810011 810011 1 + T C rs542687757 810012 + 809992 810032 41 GTCGCACGCGTGAGACTTCTCCGCCGCCTCCGCCGCAGACG GTCGCACGCGTGAGACTTCCCCGCCGCCTCCGCCGCAGACG < 41bp 1 0.457470865762924 1 0.254204213619232 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPLP2 ENSG00000177600 UTR5 Human protein_coding chr11:810012 chr11:810011 . . 0 20 hm5C_associated_SNPs_8896 0 0 1 0 1 RPLP2 chr11:810039 5'GT 810039 Upstream 29bp
chr11 810011 810011 1 + T C rs542687757 810013 + 809993 810033 41 TCGCACGCGTGAGACTTCTCCGCCGCCTCCGCCGCAGACGC TCGCACGCGTGAGACTTCCCCGCCGCCTCCGCCGCAGACGC < 41bp 1 0.683324407935488 1 0.516140401363373 experiment 0.633351184129023 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPLP2 ENSG00000177600 UTR5 Human protein_coding chr11:810013 chr11:810011 . . 0 19 hm5C_associated_SNPs_8897 0 0 1 0 1 RPLP2 chr11:810039 5'GT 810039 Upstream 29bp
chr11 810011 810011 1 + T C rs542687757 810015 + 809995 810035 41 GCACGCGTGAGACTTCTCCGCCGCCTCCGCCGCAGACGCCG GCACGCGTGAGACTTCCCCGCCGCCTCCGCCGCAGACGCCG < 41bp 1 0.343240525234915 1 0.163224846124649 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPLP2 ENSG00000177600 UTR5 Human protein_coding chr11:810015 chr11:810011 . . 0 17 hm5C_associated_SNPs_8898 0 0 1 0 1 RPLP2 chr11:810039 5'GT 810039 Upstream 29bp
chr11 810034 810034 1 + C T rs572844964 810015 + 809995 810035 41 GCACGCGTGAGACTTCTCCGCCGCCTCCGCCGCAGACGCCG GCACGCGTGAGACTTCTCCGCCGCCTCCGCCGCAGACGCTG < 41bp 1 0.371756642178595 1 0.0986404418945312 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPLP2 ENSG00000177600 UTR5 Human protein_coding chr11:810015 chr11:810034 . . 0 40 hm5C_associated_SNPs_8899 0 0 1 0 1 RPLP2 chr11:810039 5'GT 810039 Upstream 6bp
chr11 830662 830662 1 + G A rs556837233 830674 + 830654 830694 41 GAGCTGGAGCTGCAGAGCCGCGAGCAGGACCTGGAACGCGC GAGCTGGAACTGCAGAGCCGCGAGCAGGACCTGGAACGCGC < 41bp 1 0.478901800260259 1 0.448029518127441 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:830674 chr11:830662 synonymous SNV . 0 9 hm5C_associated_SNPs_8901 0 0 1 0 2 CRACR2B chr11:830621 3'AG 830621 Downstream 42bp
chr11 830662 830662 1 + G A rs556837233 830674 + 830654 830694 41 GAGCTGGAGCTGCAGAGCCGCGAGCAGGACCTGGAACGCGC GAGCTGGAACTGCAGAGCCGCGAGCAGGACCTGGAACGCGC < 41bp 1 0.478901800260259 1 0.448029518127441 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:830674 chr11:830662 synonymous SNV . 0 9 hm5C_associated_SNPs_8901 0 0 1 0 2 CRACR2B chr11:830713 5'GT 830713 Upstream 52bp
chr11 830670 830670 1 + G T rs4075289 830674 + 830654 830694 41 GAGCTGGAGCTGCAGAGCCGCGAGCAGGACCTGGAACGCGC GAGCTGGAGCTGCAGATCCGCGAGCAGGACCTGGAACGCGC < 41bp 1 0.621774778616136 1 0.572227716445923 experiment 0.756450442767729 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:830674 chr11:830670 nonsynonymous SNV 0.970 0 17 hm5C_associated_SNPs_8902 0 0 1 0 2 CRACR2B chr11:830621 3'AG 830621 Downstream 50bp
chr11 830670 830670 1 + G T rs4075289 830674 + 830654 830694 41 GAGCTGGAGCTGCAGAGCCGCGAGCAGGACCTGGAACGCGC GAGCTGGAGCTGCAGATCCGCGAGCAGGACCTGGAACGCGC < 41bp 1 0.621774778616136 1 0.572227716445923 experiment 0.756450442767729 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:830674 chr11:830670 nonsynonymous SNV 0.970 0 17 hm5C_associated_SNPs_8902 0 0 1 0 2 CRACR2B chr11:830713 5'GT 830713 Upstream 44bp
chr11 831572 831572 1 + T A rs530911961 831584 + 831564 831604 41 GGGACGCCTGCGAGGCCAGGCGGGCGGGCAGCAGCTGCAGG GGGACGCCAGCGAGGCCAGGCGGGCGGGCAGCAGCTGCAGG < 41bp 1 0.649137314685425 1 0.700644195079803 experiment 0.701725370629149 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:831584 chr11:831572 nonsynonymous SNV 0.389 0 9 hm5C_associated_SNPs_8903 0 0 1 0 1 CRACR2B chr11:831535 3'AG 831535 Downstream 38bp
chr11 985547 985547 1 + C G rs10794358 985545 + 985525 985565 41 CCAACGCGAAGAATGCCGTGCTCTTCGAGGCCATCAGCTTA CCAACGCGAAGAATGCCGTGCTGTTCGAGGCCATCAGCTTA < 41bp 1 0.0684221975403321 1 0.0596843659877777 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:985545 chr11:985547 synonymous SNV . 0 23 hm5C_associated_SNPs_8915 0 0 1 0 1 AP2A2 chr11:985582 5'GT 985582 Upstream 36bp
chr11 2797237 2797237 1 + G A rs1057128 2797253 + 2797233 2797273 41 ACTCGCAGGGCCACCTCAACCTCATGGTGCGCATCAAGGAG ACTCACAGGGCCACCTCAACCTCATGGTGCGCATCAAGGAG < 41bp 1 0.483747084307007 1 0.389591157436371 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2797253 chr11:2797237 synonymous SNV . 0 5 hm5C_associated_SNPs_8918 7 0 0 0 2 KCNQ1 chr11:2797190 3'AG 2797190 Downstream 48bp
chr11 2797237 2797237 1 + G A rs1057128 2797253 + 2797233 2797273 41 ACTCGCAGGGCCACCTCAACCTCATGGTGCGCATCAAGGAG ACTCACAGGGCCACCTCAACCTCATGGTGCGCATCAAGGAG < 41bp 1 0.483747084307007 1 0.389591157436371 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2797253 chr11:2797237 synonymous SNV . 0 5 hm5C_associated_SNPs_8918 7 0 0 0 2 KCNQ1 chr11:2797284 5'GT 2797284 Upstream 48bp
chr11 7618796 7618796 1 + T C rs74051543 7618802 + 7618782 7618822 41 CTGGAACAGGTGAGTGTCCTCACAGACCAAGTAGAAGCCCA CTGGAACAGGTGAGCGTCCTCACAGACCAAGTAGAAGCCCA < 41bp 1 0.65210197428175 1 0.823915362358093 experiment 0.6957960514365 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7618802 chr11:7618796 synonymous SNV . 0 15 hm5C_associated_SNPs_8931 0 0 0 0 1 PPFIBP2 chr11:7618791 3'AG 7618791 Downstream 6bp
chr11 8704329 8704329 1 + G A rs80106507 8704345 + 8704325 8704365 41 TGGCGAAGGCCTTCCTTTTTCGTCTGGGCTGCCAACATGGT TGGCAAAGGCCTTCCTTTTTCGTCTGGGCTGCCAACATGGT < 41bp 1 0.471461563740513 1 0.544714331626892 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL27A ENSG00000166441 UTR5 Human protein_coding chr11:8704345 chr11:8704329 . . 0 5 hm5C_associated_SNPs_8934 0 0 1 0 1 RPL27A chr11:8704363 5'GT 8704363 Upstream 35bp
chr11 8704329 8704329 1 + G A rs80106507 8704348 + 8704328 8704368 41 CGAAGGCCTTCCTTTTTCGTCTGGGCTGCCAACATGGTAGG CAAAGGCCTTCCTTTTTCGTCTGGGCTGCCAACATGGTAGG < 41bp 1 0.654033033765873 1 0.122867047786713 experiment 0.691933932468254 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL27A ENSG00000166441 UTR5 Human protein_coding chr11:8704348 chr11:8704329 . . 0 2 hm5C_associated_SNPs_8935 0 0 1 0 1 RPL27A chr11:8704363 5'GT 8704363 Upstream 35bp
chr11 8704338 8704338 1 + C A rs199764465 8704345 + 8704325 8704365 41 TGGCGAAGGCCTTCCTTTTTCGTCTGGGCTGCCAACATGGT TGGCGAAGGCCTTACTTTTTCGTCTGGGCTGCCAACATGGT < 41bp 1 0.450557341233859 1 0.352580517530441 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL27A ENSG00000166441 UTR5 Human protein_coding chr11:8704345 chr11:8704338 . . 0 14 hm5C_associated_SNPs_8936 0 0 1 0 1 RPL27A chr11:8704363 5'GT 8704363 Upstream 26bp
chr11 8704338 8704338 1 + C A rs199764465 8704348 + 8704328 8704368 41 CGAAGGCCTTCCTTTTTCGTCTGGGCTGCCAACATGGTAGG CGAAGGCCTTACTTTTTCGTCTGGGCTGCCAACATGGTAGG < 41bp 1 0.665084088110351 1 0.207617282867432 experiment 0.669831823779299 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL27A ENSG00000166441 UTR5 Human protein_coding chr11:8704348 chr11:8704338 . . 0 11 hm5C_associated_SNPs_8937 0 0 1 0 1 RPL27A chr11:8704363 5'GT 8704363 Upstream 26bp
chr11 8704338 8704338 1 + C A rs199764465 8704353 + 8704333 8704373 41 GCCTTCCTTTTTCGTCTGGGCTGCCAACATGGTAGGTGTTT GCCTTACTTTTTCGTCTGGGCTGCCAACATGGTAGGTGTTT < 41bp 1 0.350314785184927 1 0.0504456460475922 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL27A ENSG00000166441 UTR5 Human protein_coding chr11:8704353 chr11:8704338 . . 0 6 hm5C_associated_SNPs_8938 0 0 1 0 1 RPL27A chr11:8704363 5'GT 8704363 Upstream 26bp
chr11 8704338 8704338 1 + C A rs199764465 8704357 + 8704337 8704377 41 TCCTTTTTCGTCTGGGCTGCCAACATGGTAGGTGTTTCGTT TACTTTTTCGTCTGGGCTGCCAACATGGTAGGTGTTTCGTT < 41bp 1 0.592440356858196 1 0.561107754707336 experiment 0.815119286283608 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL27A ENSG00000166441 UTR5 Human protein_coding chr11:8704357 chr11:8704338 . . 0 2 hm5C_associated_SNPs_8939 0 0 1 0 1 RPL27A chr11:8704363 5'GT 8704363 Upstream 26bp
chr11 8706406 8706406 1 + T G rs4670 8706393 + 8706373 8706413 41 ACAGACACGGGTGAATGCTGCTAAAAACAAGACTGGGGCTG ACAGACACGGGTGAATGCTGCTAAAAACAAGACGGGGGCTG < 41bp 1 0.645568330562295 1 0.56515371799469 experiment 0.70886333887541 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL27A ENSG00000166441 CDS Human protein_coding chr11:8706393 chr11:8706406 synonymous SNV . 0 34 hm5C_associated_SNPs_8940 0 0 1 0 1 RPL27A chr11:8706439 5'GT 8706439 Upstream 34bp
chr11 9462003 9462003 1 + G A rs61729812 9462007 + 9461987 9462027 41 ATTATGACTTGGCAGAGGAACTGGGGAGTGATGAAGATGAT ATTATGACTTGGCAGAAGAACTGGGGAGTGATGAAGATGAT < 41bp 1 0.664809162155945 1 0.525290846824646 experiment 0.670381675688109 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9462007 chr11:9462003 synonymous SNV . 0 17 hm5C_associated_SNPs_8984 0 0 1 0 1 IPO7 chr11:9462002 3'AG 9462002 Downstream 2bp
chr11 10783514 10783514 1 + T C rs116362368 10783524 + 10783504 10783544 41 TTAAAAATGGTGTCCAGCTTCTTTCCAGAGCCTATACTATT TTAAAAATGGCGTCCAGCTTCTTTCCAGAGCCTATACTATT < 41bp 1 0.0382834813103294 1 0.064091682434082 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTR9 ENSG00000198730 CDS Human protein_coding chr11:10783524 chr11:10783514 synonymous SNV . 0 11 hm5C_associated_SNPs_8990 0 0 1 0 2 CTR9 chr11:10783494 3'AG 10783494 Downstream 21bp
chr11 10783514 10783514 1 + T C rs116362368 10783524 + 10783504 10783544 41 TTAAAAATGGTGTCCAGCTTCTTTCCAGAGCCTATACTATT TTAAAAATGGCGTCCAGCTTCTTTCCAGAGCCTATACTATT < 41bp 1 0.0382834813103294 1 0.064091682434082 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTR9 ENSG00000198730 CDS Human protein_coding chr11:10783524 chr11:10783514 synonymous SNV . 0 11 hm5C_associated_SNPs_8990 0 0 1 0 2 CTR9 chr11:10783601 5'GT 10783601 Upstream 88bp
chr11 12281427 12281427 1 + T C rs1027335 12281442 + 12281422 12281462 41 CACCCTGGAAGGCAGCCCCCCAGGTATCTCCACCTCCTTCT CACCCCGGAAGGCAGCCCCCCAGGTATCTCCACCTCCTTCT < 41bp 1 0.621157881172017 1 0.129980742931366 experiment 0.757684237655966 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12281442 chr11:12281427 nonsynonymous SNV 0.062 0 6 hm5C_associated_SNPs_8992 0 0 1 0 2 MICAL2 chr11:12281342 3'AG 12281342 Downstream 86bp
chr11 12281427 12281427 1 + T C rs1027335 12281442 + 12281422 12281462 41 CACCCTGGAAGGCAGCCCCCCAGGTATCTCCACCTCCTTCT CACCCCGGAAGGCAGCCCCCCAGGTATCTCCACCTCCTTCT < 41bp 1 0.621157881172017 1 0.129980742931366 experiment 0.757684237655966 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12281442 chr11:12281427 nonsynonymous SNV 0.062 0 6 hm5C_associated_SNPs_8992 0 0 1 0 2 MICAL2 chr11:12281444 5'GT 12281444 Upstream 18bp
chr11 12281438 12281438 1 + C T rs35518829 12281442 + 12281422 12281462 41 CACCCTGGAAGGCAGCCCCCCAGGTATCTCCACCTCCTTCT CACCCTGGAAGGCAGCTCCCCAGGTATCTCCACCTCCTTCT < 41bp 1 0.69362986172459 1 0.246012181043625 experiment 0.612740276550821 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12281442 chr11:12281438 nonsynonymous SNV 0.993 0 17 hm5C_associated_SNPs_8993 0 0 1 1 2 MICAL2 chr11:12281342 3'AG 12281342 Downstream 97bp
chr11 12281438 12281438 1 + C T rs35518829 12281442 + 12281422 12281462 41 CACCCTGGAAGGCAGCCCCCCAGGTATCTCCACCTCCTTCT CACCCTGGAAGGCAGCTCCCCAGGTATCTCCACCTCCTTCT < 41bp 1 0.69362986172459 1 0.246012181043625 experiment 0.612740276550821 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12281442 chr11:12281438 nonsynonymous SNV 0.993 0 17 hm5C_associated_SNPs_8993 0 0 1 1 2 MICAL2 chr11:12281444 5'GT 12281444 Upstream 7bp
chr11 17393588 17393588 1 + C G rs565899443 17393604 + 17393584 17393624 41 CTCTCAAGTGCATTCTGAAACACTGGAACTCCTTTGACACT CTCTGAAGTGCATTCTGAAACACTGGAACTCCTTTGACACT < 41bp 1 0.339127134889763 1 0.091413676738739 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NCR3LG1 ENSG00000188211 CDS Human protein_coding chr11:17393604 chr11:17393588 synonymous SNV . 0 5 hm5C_associated_SNPs_9002 0 0 1 0 1 NCR3LG1 chr11:17393553 3'AG 17393553 Downstream 36bp
chr11 19173749 19173749 1 + A G rs202012922 19173768 + 19173748 19173788 41 AATGTGGTTGATAAAATACACCAAAACACTCCACTTCACTG AGTGTGGTTGATAAAATACACCAAAACACTCCACTTCACTG < 41bp 1 0.456954827861486 1 0.0830844044685364 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZDHHC13 ENSG00000177054 CDS Human protein_coding chr11:19173768 chr11:19173749 nonsynonymous SNV 0.996 0 2 hm5C_associated_SNPs_9003 0 0 1 0 1 ZDHHC13 chr11:19173705 3'AG 19173705 Downstream 45bp
chr11 19970252 19970252 1 + G A rs78430105 19970261 + 19970241 19970281 41 TTGGAAACCACGTTTGACACCAATGTCACCACGGAGATGAG TTGGAAACCACATTTGACACCAATGTCACCACGGAGATGAG < 41bp 1 0.0565504002532685 1 0.0641260147094727 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:19970261 chr11:19970252 synonymous SNV . 0 12 hm5C_associated_SNPs_9005 0 0 0 0 1 NAV2 chr11:19970237 3'AG 19970237 Downstream 16bp
chr11 19970273 19970273 1 + G A rs61976957 19970261 + 19970241 19970281 41 TTGGAAACCACGTTTGACACCAATGTCACCACGGAGATGAG TTGGAAACCACGTTTGACACCAATGTCACCACAGAGATGAG < 41bp 1 0.0720637966425521 1 0.0617231726646423 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:19970261 chr11:19970273 synonymous SNV . 0 33 hm5C_associated_SNPs_9006 0 0 0 0 1 NAV2 chr11:19970237 3'AG 19970237 Downstream 37bp
chr11 20139705 20139705 1 + G A rs552719410 20139725 + 20139705 20139745 41 GGCAGCCAACTACTCCAGCCCCCAGAGCTATGACAGCGACT AGCAGCCAACTACTCCAGCCCCCAGAGCTATGACAGCGACT < 41bp 1 0.057441674510779 1 0.437919020652771 experiment 1 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:20139725 chr11:20139705 synonymous SNV . 0 1 hm5C_associated_SNPs_9007 0 0 1 0 1 NAV2 chr11:20139679 3'AG 20139679 Downstream 27bp
chr11 25004818 25004818 1 + A C rs75747459 25004826 + 25004806 25004846 41 CTCTAAGCTTCCAGATGCAGCGGCCAAAAGCAAGGTACCTA CTCTAAGCTTCCCGATGCAGCGGCCAAAAGCAAGGTACCTA < 41bp 1 0.335341828786196 1 0.678691864013672 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LUZP2 ENSG00000187398 CDS Human protein_coding chr11:25004826 chr11:25004818 synonymous SNV . 0 13 hm5C_associated_SNPs_9009 0 0 0 0 1 LUZP2 chr11:25004839 5'GT 25004839 Upstream 22bp
chr11 31392362 31392362 1 + A G rs111299050 31392369 + 31392349 31392389 41 AGACCCATCTGCAAATATATCAGACCTAAAACAAAAATATC AGACCCATCTGCAGATATATCAGACCTAAAACAAAAATATC < 41bp 1 0.372017127336247 1 0.315642327070236 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC24 ENSG00000170946 CDS Human protein_coding chr11:31392369 chr11:31392362 nonsynonymous SNV 0.944 0 14 hm5C_associated_SNPs_9010 0 0 1 0 2 DNAJC24 chr11:31392263 3'AG 31392263 Downstream 100bp
chr11 31392362 31392362 1 + A G rs111299050 31392369 + 31392349 31392389 41 AGACCCATCTGCAAATATATCAGACCTAAAACAAAAATATC AGACCCATCTGCAGATATATCAGACCTAAAACAAAAATATC < 41bp 1 0.372017127336247 1 0.315642327070236 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC24 ENSG00000170946 CDS Human protein_coding chr11:31392369 chr11:31392362 nonsynonymous SNV 0.944 0 14 hm5C_associated_SNPs_9010 0 0 1 0 2 DNAJC24 chr11:31392406 5'GT 31392406 Upstream 45bp
chr11 31838161 31838161 1 + C A rs1806184 31838180 + 31838160 31838200 41 ACCCGCGGAGGAGAGGATCCCGGCCCAGGTAAGGCGTGCGG AACCGCGGAGGAGAGGATCCCGGCCCAGGTAAGGCGTGCGG < 41bp 1 0.786387314099888 1 0.467164099216461 experiment 0.427225371800224 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PAX6-AS1 ENSG00000049449 CDS Human protein_coding chr11:31838180 chr11:31838161 nonsynonymous SNV 0.004 1 2 hm5C_associated_SNPs_9011 0 0 0 0 1 PAX6-AS1 chr11:31838187 5'GT 31838187 Upstream 27bp
chr11 31838181 31838181 1 + G A rs495902 31838180 + 31838160 31838200 41 ACCCGCGGAGGAGAGGATCCCGGCCCAGGTAAGGCGTGCGG ACCCGCGGAGGAGAGGATCCCAGCCCAGGTAAGGCGTGCGG < 41bp 1 0.778691339928012 1 0.225259751081467 experiment 0.442617320143977 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PAX6-AS1 ENSG00000049449 CDS Human protein_coding chr11:31838180 chr11:31838181 nonsynonymous SNV 0.108 1 22 hm5C_associated_SNPs_9012 0 0 0 0 1 PAX6-AS1 chr11:31838187 5'GT 31838187 Upstream 7bp
chr11 32118697 32118697 1 + G A rs201000684 32118684 + 32118664 32118704 41 TCTTTTTTTTTTTTTTTGTACTGCAGGAAGATTGTTGATCG TCTTTTTTTTTTTTTTTGTACTGCAGGAAGATTATTGATCG < 41bp 1 0.539817297943815 1 0.351494699716568 experiment 0.92036540411237 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RCN1 ENSG00000049449 CDS Human protein_coding chr11:32118684 chr11:32118697 nonsynonymous SNV 0.981 2 34 hm5C_associated_SNPs_9013 0 0 1 0 1 RCN1 chr11:32118690 3'AG 32118690 Downstream 8bp
chr11 32118697 32118697 1 + G A rs201000684 32118687 + 32118667 32118707 41 TTTTTTTTTTTTTTGTACTGCAGGAAGATTGTTGATCGAAT TTTTTTTTTTTTTTGTACTGCAGGAAGATTATTGATCGAAT < 41bp 1 0.555574110033017 1 0.398691177368164 experiment 0.888851779933965 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RCN1 ENSG00000049449 CDS Human protein_coding chr11:32118687 chr11:32118697 nonsynonymous SNV 0.981 2 31 hm5C_associated_SNPs_9014 0 0 1 0 1 RCN1 chr11:32118690 3'AG 32118690 Downstream 8bp
chr11 32605400 32605400 1 + C A rs113415019 32605383 + 32605363 32605403 41 CGCGGCCCAGTTCCCTTTTCCGGTCGGCGTGGTCTTGCGAG CGCGGCCCAGTTCCCTTTTCCGGTCGGCGTGGTCTTGAGAG < 41bp 1 0.658802073592996 1 0.835012197494507 experiment 0.682395852814008 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EIF3M ENSG00000149100 UTR5 Human protein_coding chr11:32605383 chr11:32605400 . . 0 38 hm5C_associated_SNPs_9016 0 0 1 0 1 EIF3M chr11:32605475 5'GT 32605475 Upstream 76bp
chr11 32605400 32605400 1 + C A rs113415019 32605387 + 32605367 32605407 41 GCCCAGTTCCCTTTTCCGGTCGGCGTGGTCTTGCGAGTGGA GCCCAGTTCCCTTTTCCGGTCGGCGTGGTCTTGAGAGTGGA < 41bp 1 0.758100250415696 1 0.426477134227753 experiment 0.483799499168609 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EIF3M ENSG00000149100 UTR5 Human protein_coding chr11:32605387 chr11:32605400 . . 0 34 hm5C_associated_SNPs_9017 0 0 1 0 1 EIF3M chr11:32605475 5'GT 32605475 Upstream 76bp
chr11 32953904 32953904 1 + T C rs186308329 32953900 + 32953880 32953920 41 AGTCATCTTTATCCTGTAGCCCAATTGGAGATTCCACTCAG AGTCATCTTTATCCTGTAGCCCAACTGGAGATTCCACTCAG < 41bp 1 0.18279809189415 1 0.243668258190155 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QSER1 ENSG00000060749 CDS Human protein_coding chr11:32953900 chr11:32953904 nonsynonymous SNV 0.574 1 25 hm5C_associated_SNPs_9020 0 0 1 0 1 QSER1 chr11:32953920 5'GT 32953920 Upstream 17bp
chr11 32953904 32953904 1 + T C rs186308329 32953901 + 32953881 32953921 41 GTCATCTTTATCCTGTAGCCCAATTGGAGATTCCACTCAGG GTCATCTTTATCCTGTAGCCCAACTGGAGATTCCACTCAGG < 41bp 1 0.216392358796313 1 0.292880475521088 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QSER1 ENSG00000060749 CDS Human protein_coding chr11:32953901 chr11:32953904 nonsynonymous SNV 0.574 1 24 hm5C_associated_SNPs_9021 0 0 1 0 1 QSER1 chr11:32953920 5'GT 32953920 Upstream 17bp
chr11 34969150 34969150 1 + C T rs34582941 34969143 + 34969123 34969163 41 AAGTGATGATGGAATCTTGGCCAAAATCGTGGTAAGTTTTT AAGTGATGATGGAATCTTGGCCAAAATTGTGGTAAGTTTTT < 41bp 1 0.151676784901677 1 0.186306208372116 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PDHX ENSG00000110435 CDS Human protein_coding chr11:34969143 chr11:34969150 synonymous SNV . 0 28 hm5C_associated_SNPs_9037 2 0 1 0 2 PDHX chr11:34969053 3'AG 34969053 Downstream 98bp
chr11 34969150 34969150 1 + C T rs34582941 34969143 + 34969123 34969163 41 AAGTGATGATGGAATCTTGGCCAAAATCGTGGTAAGTTTTT AAGTGATGATGGAATCTTGGCCAAAATTGTGGTAAGTTTTT < 41bp 1 0.151676784901677 1 0.186306208372116 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PDHX ENSG00000110435 CDS Human protein_coding chr11:34969143 chr11:34969150 synonymous SNV . 0 28 hm5C_associated_SNPs_9037 2 0 1 0 2 PDHX chr11:34969153 5'GT 34969153 Upstream 4bp
chr11 36422792 36422792 1 + G A rs330261 36422793 + 36422773 36422813 41 CCTTCCCCGATTCCAAGCAGCTCGGCAGGCTCTGCAGCTGA CCTTCCCCGATTCCAAGCAACTCGGCAGGCTCTGCAGCTGA < 41bp 1 0.70142574839818 1 0.629932999610901 experiment 0.597148503203641 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRR5L ENSG00000135362 CDS Human protein_coding chr11:36422793 chr11:36422792 nonsynonymous SNV 0.018 0 20 hm5C_associated_SNPs_9041 0 0 0 0 1 PRR5L chr11:36422835 5'GT 36422835 Upstream 44bp
chr11 43413479 43413479 1 + C T rs137942695 43413476 + 43413456 43413496 41 GGAGTATAGATGACATAGGTCACCTCATTCATGAAGGCCTA GGAGTATAGATGACATAGGTCACTTCATTCATGAAGGCCTA < 41bp 1 0.162461547545241 1 0.0401407480239868 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TTC17 ENSG00000052841 CDS Human protein_coding chr11:43413476 chr11:43413479 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_9043 0 0 1 0 1 TTC17 chr11:43413502 5'GT 43413502 Upstream 24bp
chr11 43465659 43465659 1 + T C rs76342567 43465648 + 43465628 43465668 41 TAAAGAAACCCAAAGGAGATCATAAGAAAACTCCTGGGAAA TAAAGAAACCCAAAGGAGATCATAAGAAAACCCCTGGGAAA < 41bp 1 0.380680691133159 1 0.319040656089783 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTC17 ENSG00000052841 CDS Human protein_coding chr11:43465648 chr11:43465659 synonymous SNV . 0 32 hm5C_associated_SNPs_9044 0 0 1 0 1 TTC17 chr11:43465606 3'AG 43465606 Downstream 54bp
chr11 43902650 43902650 1 + G A rs11555640 43902631 + 43902611 43902651 41 AAAGGAAGTGCCCTTATCCACGACCAAGCTCTTCCACCTGC AAAGGAAGTGCCCTTATCCACGACCAAGCTCTTCCACCTAC < 41bp 1 0.481953842643265 1 0.0449461936950684 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALKBH3 ENSG00000166199 UTR5 Human protein_coding chr11:43902631 chr11:43902650 . . 0 40 hm5C_associated_SNPs_9048 0 0 0 1 1 ALKBH3 chr11:43902729 5'GT 43902729 Upstream 80bp
chr11 44129781 44129781 1 + G A rs148121594 44129787 + 44129767 44129807 41 GAGACAGCACAAGCGATGGCCCAGCTCTCTAGGTATCTCAC GAGACAGCACAAGCAATGGCCCAGCTCTCTAGGTATCTCAC < 41bp 1 0.0786540693123574 1 0.0805185437202454 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129787 chr11:44129781 synonymous SNV . 0 15 hm5C_associated_SNPs_9058 0 0 1 0 1 EXT2 chr11:44129798 5'GT 44129798 Upstream 18bp
chr11 44639774 44639774 1 + C T rs541161774 44639783 + 44639763 44639803 41 CTCATGAATCGCCCTGAGGTCACCTACCCCTGTTCCTGCGA CTCATGAATCGTCCTGAGGTCACCTACCCCTGTTCCTGCGA < 41bp 1 0.345642001063241 1 0.102156907320023 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD82 ENSG00000085117 CDS Human protein_coding chr11:44639783 chr11:44639774 synonymous SNV . 0 12 hm5C_associated_SNPs_9061 0 0 1 0 1 CD82 chr11:44639712 3'AG 44639712 Downstream 63bp
chr11 44639801 44639801 1 + C A rs139816598 44639783 + 44639763 44639803 41 CTCATGAATCGCCCTGAGGTCACCTACCCCTGTTCCTGCGA CTCATGAATCGCCCTGAGGTCACCTACCCCTGTTCCTGAGA < 41bp 1 0.321519406215583 1 0.0883147120475769 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD82 ENSG00000085117 CDS Human protein_coding chr11:44639783 chr11:44639801 stopgain 0.396 1 39 hm5C_associated_SNPs_9062 0 0 1 0 1 CD82 chr11:44639712 3'AG 44639712 Downstream 90bp
chr11 45923988 45923988 1 + G A rs370741115 45923984 + 45923964 45924004 41 GAGCTGCCCCCCCAGAGCGGCCCCGCCCCCACCACAGATCG GAGCTGCCCCCCCAGAGCGGCCCCACCCCCACCACAGATCG < 41bp 1 0.124247690245729 1 0.155689805746078 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923984 chr11:45923988 nonsynonymous SNV 0.301 0 25 hm5C_associated_SNPs_9076 0 0 1 0 1 MAPK8IP1 chr11:45923923 3'AG 45923923 Downstream 66bp
chr11 45923988 45923988 1 + G A rs370741115 45923985 + 45923965 45924005 41 AGCTGCCCCCCCAGAGCGGCCCCGCCCCCACCACAGATCGA AGCTGCCCCCCCAGAGCGGCCCCACCCCCACCACAGATCGA < 41bp 1 0.0275335579726118 1 0.0936552584171295 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923985 chr11:45923988 nonsynonymous SNV 0.301 0 24 hm5C_associated_SNPs_9077 0 0 1 0 1 MAPK8IP1 chr11:45923923 3'AG 45923923 Downstream 66bp
chr11 45923988 45923988 1 + G A rs370741115 45923986 + 45923966 45924006 41 GCTGCCCCCCCAGAGCGGCCCCGCCCCCACCACAGATCGAG GCTGCCCCCCCAGAGCGGCCCCACCCCCACCACAGATCGAG < 41bp 1 0.0298230280996193 1 0.0644825100898743 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923986 chr11:45923988 nonsynonymous SNV 0.301 0 23 hm5C_associated_SNPs_9078 0 0 1 0 1 MAPK8IP1 chr11:45923923 3'AG 45923923 Downstream 66bp
chr11 45923988 45923988 1 + G A rs370741115 45923987 + 45923967 45924007 41 CTGCCCCCCCAGAGCGGCCCCGCCCCCACCACAGATCGAGG CTGCCCCCCCAGAGCGGCCCCACCCCCACCACAGATCGAGG < 41bp 1 0.0995643710836397 1 0.181822180747986 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923987 chr11:45923988 nonsynonymous SNV 0.301 0 22 hm5C_associated_SNPs_9079 0 0 1 0 1 MAPK8IP1 chr11:45923923 3'AG 45923923 Downstream 66bp
chr11 45923988 45923988 1 + G A rs370741115 45923989 + 45923969 45924009 41 GCCCCCCCAGAGCGGCCCCGCCCCCACCACAGATCGAGGCA GCCCCCCCAGAGCGGCCCCACCCCCACCACAGATCGAGGCA < 41bp 1 0.0803649250484551 1 0.164943665266037 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923989 chr11:45923988 nonsynonymous SNV 0.301 0 20 hm5C_associated_SNPs_9080 0 0 1 0 1 MAPK8IP1 chr11:45923923 3'AG 45923923 Downstream 66bp
chr11 45923988 45923988 1 + G A rs370741115 45923990 + 45923970 45924010 41 CCCCCCCAGAGCGGCCCCGCCCCCACCACAGATCGAGGCAC CCCCCCCAGAGCGGCCCCACCCCCACCACAGATCGAGGCAC < 41bp 1 0.382599992555471 1 0.49979904294014 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923990 chr11:45923988 nonsynonymous SNV 0.301 0 19 hm5C_associated_SNPs_9081 0 0 1 0 1 MAPK8IP1 chr11:45923923 3'AG 45923923 Downstream 66bp
chr11 45923988 45923988 1 + G A rs370741115 45923991 + 45923971 45924011 41 CCCCCCAGAGCGGCCCCGCCCCCACCACAGATCGAGGCACC CCCCCCAGAGCGGCCCCACCCCCACCACAGATCGAGGCACC < 41bp 1 0.107141198355514 1 0.152163207530975 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923991 chr11:45923988 nonsynonymous SNV 0.301 0 18 hm5C_associated_SNPs_9082 0 0 1 0 1 MAPK8IP1 chr11:45923923 3'AG 45923923 Downstream 66bp
chr11 45923988 45923988 1 + G A rs370741115 45923992 + 45923972 45924012 41 CCCCCAGAGCGGCCCCGCCCCCACCACAGATCGAGGCACCT CCCCCAGAGCGGCCCCACCCCCACCACAGATCGAGGCACCT < 41bp 1 0.0536628146036375 1 0.199344456195831 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923992 chr11:45923988 nonsynonymous SNV 0.301 0 17 hm5C_associated_SNPs_9083 0 0 1 0 1 MAPK8IP1 chr11:45923923 3'AG 45923923 Downstream 66bp
chr11 45923988 45923988 1 + G A rs370741115 45923993 + 45923973 45924013 41 CCCCAGAGCGGCCCCGCCCCCACCACAGATCGAGGCACCTC CCCCAGAGCGGCCCCACCCCCACCACAGATCGAGGCACCTC < 41bp 1 0.736670023244254 1 0.429005682468414 experiment 0.526659953511492 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923993 chr11:45923988 nonsynonymous SNV 0.301 0 16 hm5C_associated_SNPs_9084 0 0 1 0 1 MAPK8IP1 chr11:45923923 3'AG 45923923 Downstream 66bp
chr11 45924662 45924662 1 + G A rs148883443 45924677 + 45924657 45924697 41 TCCACGCCTGATGAACCCGACGTCCATTTCTCCAAGAAATT TCCACACCTGATGAACCCGACGTCCATTTCTCCAAGAAATT < 41bp 1 0.0282604120215251 1 0.0573947429656982 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45924677 chr11:45924662 synonymous SNV . 0 6 hm5C_associated_SNPs_9085 0 0 1 0 1 MAPK8IP1 chr11:45924735 5'GT 45924735 Upstream 74bp
chr11 46387835 46387835 1 + G A rs143155087 46387834 + 46387814 46387854 41 CTTTCTTTAGGAGACATTTCCGGGGGAAGGTGCCAGGCCCT CTTTCTTTAGGAGACATTTCCAGGGGAAGGTGCCAGGCCCT < 41bp 1 0.797669070411219 1 0.988303303718567 experiment 0.404661859177561 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46387834 chr11:46387835 nonsynonymous SNV 0.209 0 22 hm5C_associated_SNPs_9100 0 0 1 0 1 DGKZ chr11:46387794 3'AG 46387794 Downstream 42bp
chr11 46387868 46387868 1 + A G rs1317826 46387881 + 46387861 46387901 41 GGGCAGCAGCGGCCCAGCAGCGTGGGGCTGCCCACAGGCAA GGGCAGCGGCGGCCCAGCAGCGTGGGGCTGCCCACAGGCAA < 41bp 1 0.77391705705529 1 0.821017742156982 experiment 0.45216588588942 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46387881 chr11:46387868 nonsynonymous SNV 0.067 0 8 hm5C_associated_SNPs_9101 0 0 1 0 1 DGKZ chr11:46387794 3'AG 46387794 Downstream 75bp
chr11 46403649 46403649 1 + G A rs20542 46403637 + 46403617 46403657 41 CGAGGCTTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCT CGAGGCTTCCTCCTCCTCACCCTCCTCGCCCTACTGGCGCT < 41bp 1 0.0496096716644424 1 0.0764974057674408 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403637 chr11:46403649 synonymous SNV . 0 33 hm5C_associated_SNPs_9114 0 0 1 0 2 MDK chr11:46403607 3'AG 46403607 Downstream 43bp
chr11 46403649 46403649 1 + G A rs20542 46403637 + 46403617 46403657 41 CGAGGCTTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCT CGAGGCTTCCTCCTCCTCACCCTCCTCGCCCTACTGGCGCT < 41bp 1 0.0496096716644424 1 0.0764974057674408 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403637 chr11:46403649 synonymous SNV . 0 33 hm5C_associated_SNPs_9114 0 0 1 0 2 MDK chr11:46403683 5'GT 46403683 Upstream 35bp
chr11 46403649 46403649 1 + G A rs20542 46403638 + 46403618 46403658 41 GAGGCTTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCTC GAGGCTTCCTCCTCCTCACCCTCCTCGCCCTACTGGCGCTC < 41bp 1 0.461794085416625 1 0.344084352254868 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403638 chr11:46403649 synonymous SNV . 0 32 hm5C_associated_SNPs_9115 0 0 1 0 2 MDK chr11:46403607 3'AG 46403607 Downstream 43bp
chr11 46403649 46403649 1 + G A rs20542 46403638 + 46403618 46403658 41 GAGGCTTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCTC GAGGCTTCCTCCTCCTCACCCTCCTCGCCCTACTGGCGCTC < 41bp 1 0.461794085416625 1 0.344084352254868 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403638 chr11:46403649 synonymous SNV . 0 32 hm5C_associated_SNPs_9115 0 0 1 0 2 MDK chr11:46403683 5'GT 46403683 Upstream 35bp
chr11 46403649 46403649 1 + G A rs20542 46403643 + 46403623 46403663 41 TTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCTCACCTC TTCCTCCTCCTCACCCTCCTCGCCCTACTGGCGCTCACCTC < 41bp 1 0.548404911802525 1 0.795686423778534 experiment 0.903190176394949 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403643 chr11:46403649 synonymous SNV . 0 27 hm5C_associated_SNPs_9116 0 0 1 0 2 MDK chr11:46403607 3'AG 46403607 Downstream 43bp
chr11 46403649 46403649 1 + G A rs20542 46403643 + 46403623 46403663 41 TTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCTCACCTC TTCCTCCTCCTCACCCTCCTCGCCCTACTGGCGCTCACCTC < 41bp 1 0.548404911802525 1 0.795686423778534 experiment 0.903190176394949 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403643 chr11:46403649 synonymous SNV . 0 27 hm5C_associated_SNPs_9116 0 0 1 0 2 MDK chr11:46403683 5'GT 46403683 Upstream 35bp
chr11 47289864 47289864 1 + T C rs141966313 47289881 + 47289861 47289901 41 ATATGTGGAAGCCCTGCATGCCTACGTCTCCATCCACCATC ATACGTGGAAGCCCTGCATGCCTACGTCTCCATCCACCATC < 41bp 1 0.0781893185193252 1 0.01653653383255 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47289881 chr11:47289864 synonymous SNV . 0 4 hm5C_associated_SNPs_9119 0 0 1 0 2 NR1H3 chr11:47289812 3'AG 47289812 Downstream 53bp
chr11 47289864 47289864 1 + T C rs141966313 47289881 + 47289861 47289901 41 ATATGTGGAAGCCCTGCATGCCTACGTCTCCATCCACCATC ATACGTGGAAGCCCTGCATGCCTACGTCTCCATCCACCATC < 41bp 1 0.0781893185193252 1 0.01653653383255 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47289881 chr11:47289864 synonymous SNV . 0 4 hm5C_associated_SNPs_9119 0 0 1 0 2 NR1H3 chr11:47289906 5'GT 47289906 Upstream 43bp
chr11 47289906 47289906 1 + T A rs78765998 47289902 + 47289882 47289922 41 CTACGTCTCCATCCACCATCCCCATGTGAGTCTCCCCATGG CTACGTCTCCATCCACCATCCCCAAGTGAGTCTCCCCATGG < 41bp 1 0.45759951663835 1 0.672565937042236 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47289902 chr11:47289906 nonsynonymous SNV 0.713 1 25 hm5C_associated_SNPs_9120 0 0 1 0 2 NR1H3 chr11:47289812 3'AG 47289812 Downstream 95bp
chr11 47289906 47289906 1 + T A rs78765998 47289902 + 47289882 47289922 41 CTACGTCTCCATCCACCATCCCCATGTGAGTCTCCCCATGG CTACGTCTCCATCCACCATCCCCAAGTGAGTCTCCCCATGG < 41bp 1 0.45759951663835 1 0.672565937042236 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47289902 chr11:47289906 nonsynonymous SNV 0.713 1 25 hm5C_associated_SNPs_9120 0 0 1 0 2 NR1H3 chr11:47289906 5'GT 47289906 Upstream 1bp
chr11 48152011 48152011 1 + C T rs145863492 48152020 + 48152000 48152040 41 TCTTTGCATAGCCCCTGTTCCAGTTTCTGACTTCCGAGTGA TCTTTGCATAGTCCCTGTTCCAGTTTCTGACTTCCGAGTGA < 41bp 1 0.105193878549351 1 0.235733479261398 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48152020 chr11:48152011 nonsynonymous SNV 0.053 0 12 hm5C_associated_SNPs_9129 0 0 0 0 1 PTPRJ chr11:48152011 3'AG 48152011 Downstream 1bp
chr11 58379197 58379197 1 + G A rs140688902 58379202 + 58379182 58379222 41 AATTAGAGAGGATGAGGAACCTCCAAGGAAGTGAGTAGGCA AATTAGAGAGGATGAAGAACCTCCAAGGAAGTGAGTAGGCA < 41bp 1 0.766675635961821 1 0.807965040206909 experiment 0.466648728076358 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58379202 chr11:58379197 synonymous SNV . 0 16 hm5C_associated_SNPs_9131 0 0 1 0 1 ZFP91 chr11:58379211 5'GT 58379211 Upstream 15bp
chr11 58379197 58379197 1 + G A rs140688902 58379204 + 58379184 58379224 41 TTAGAGAGGATGAGGAACCTCCAAGGAAGTGAGTAGGCAAT TTAGAGAGGATGAAGAACCTCCAAGGAAGTGAGTAGGCAAT < 41bp 1 0.197354910214127 1 0.305800199508667 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58379204 chr11:58379197 synonymous SNV . 0 14 hm5C_associated_SNPs_9132 0 0 1 0 1 ZFP91 chr11:58379211 5'GT 58379211 Upstream 15bp
chr11 58379197 58379197 1 + G A rs140688902 58379205 + 58379185 58379225 41 TAGAGAGGATGAGGAACCTCCAAGGAAGTGAGTAGGCAATT TAGAGAGGATGAAGAACCTCCAAGGAAGTGAGTAGGCAATT < 41bp 1 0.505256875684645 1 0.305405139923096 experiment 0.98948624863071 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58379205 chr11:58379197 synonymous SNV . 0 13 hm5C_associated_SNPs_9133 0 0 1 0 1 ZFP91 chr11:58379211 5'GT 58379211 Upstream 15bp
chr11 58959633 58959633 1 + G A rs186374111 58959625 + 58959605 58959645 41 CCTCAGGCTACAAGGGCCCGCAGCCTACGGTAAAACCTGAC CCTCAGGCTACAAGGGCCCGCAGCCTACAGTAAAACCTGAC < 41bp 1 0.223181032162259 1 0.487181901931763 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DTX4 ENSG00000110042 CDS Human protein_coding chr11:58959625 chr11:58959633 synonymous SNV . 0 29 hm5C_associated_SNPs_9134 0 0 0 0 2 DTX4 chr11:58959571 3'AG 58959571 Downstream 63bp
chr11 58959633 58959633 1 + G A rs186374111 58959625 + 58959605 58959645 41 CCTCAGGCTACAAGGGCCCGCAGCCTACGGTAAAACCTGAC CCTCAGGCTACAAGGGCCCGCAGCCTACAGTAAAACCTGAC < 41bp 1 0.223181032162259 1 0.487181901931763 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DTX4 ENSG00000110042 CDS Human protein_coding chr11:58959625 chr11:58959633 synonymous SNV . 0 29 hm5C_associated_SNPs_9134 0 0 0 0 2 DTX4 chr11:58959723 5'GT 58959723 Upstream 91bp
chr11 60702039 60702039 1 + G A rs547223000 60702059 + 60702039 60702079 41 GGTGTGCGCTTCCTCGCCCCCTTCGCGGCCCACCCGCTGGA AGTGTGCGCTTCCTCGCCCCCTTCGCGGCCCACCCGCTGGA < 41bp 1 0.414198670229434 1 0.326725244522095 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60702059 chr11:60702039 nonsynonymous SNV 0.872 0 1 hm5C_associated_SNPs_9162 0 0 1 0 1 TMEM132A chr11:60701960 3'AG 60701960 Downstream 80bp
chr11 61165769 61165769 1 + A G rs111371929 61165787 + 61165767 61165807 41 GCAGCCCATCAGGCTGACACCACACATATTGCTTCTGGTAC GCGGCCCATCAGGCTGACACCACACATATTGCTTCTGGTAC < 41bp 1 0.378507552810098 1 0.090362936258316 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM216 ENSG00000187049 UTR3 Human protein_coding chr11:61165787 chr11:61165769 . . 0 3 hm5C_associated_SNPs_9169 3 0 1 0 1 TMEM216 chr11:61165742 3'AG 61165742 Downstream 28bp
chr11 61252163 61252163 1 + C T rs373143089 61252171 + 61252151 61252191 41 TCCTCCCAGGTCCGGAAGGTCCATTTCGACACCCAGGAGCA TCCTCCCAGGTCTGGAAGGTCCATTTCGACACCCAGGAGCA < 41bp 1 0.103809786165289 1 0.0417065322399139 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61252171 chr11:61252163 nonsynonymous SNV 0.968 2 13 hm5C_associated_SNPs_9170 0 0 0 0 1 PPP1R32 chr11:61252160 3'AG 61252160 Downstream 4bp
chr11 61511078 61511078 1 + C T rs149360213 61511075 + 61511055 61511095 41 GCTGTCGCCAGTGGTTGCGGCGGCGGCCCGCCAGGACCCGG GCTGTCGCCAGTGGTTGCGGCGGTGGCCCGCCAGGACCCGG < 41bp 1 0.396879890740182 1 0.779499650001526 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61511075 chr11:61511078 nonsynonymous SNV 0.023 1 24 hm5C_associated_SNPs_9177 0 0 0 0 1 DAGLA chr11:61511004 3'AG 61511004 Downstream 75bp
chr11 61511081 61511081 1 + C A rs144674730 61511075 + 61511055 61511095 41 GCTGTCGCCAGTGGTTGCGGCGGCGGCCCGCCAGGACCCGG GCTGTCGCCAGTGGTTGCGGCGGCGGACCGCCAGGACCCGG < 41bp 1 0.629176270544209 1 0.89159107208252 experiment 0.741647458911582 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61511075 chr11:61511081 nonsynonymous SNV 0.437 1 27 hm5C_associated_SNPs_9178 0 0 0 0 1 DAGLA chr11:61511004 3'AG 61511004 Downstream 78bp
chr11 61722639 61722639 1 + C T rs57132800 61722649 + 61722629 61722669 41 ATTGCGACAGCTACATCCAGCTCATCCCCATTTCCTTCGTG ATTGCGACAGTTACATCCAGCTCATCCCCATTTCCTTCGTG < 41bp 1 0.201626373027216 1 0.0799563527107239 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61722649 chr11:61722639 synonymous SNV . 0 11 hm5C_associated_SNPs_9187 3 0 0 0 1 BEST1 chr11:61722673 5'GT 61722673 Upstream 35bp
chr11 61722645 61722645 1 + C A rs1109748 61722649 + 61722629 61722669 41 ATTGCGACAGCTACATCCAGCTCATCCCCATTTCCTTCGTG ATTGCGACAGCTACATACAGCTCATCCCCATTTCCTTCGTG < 41bp 1 0.220192806595425 1 0.0716200470924377 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61722649 chr11:61722645 synonymous SNV . 0 17 hm5C_associated_SNPs_9188 5 1 0 0 1 BEST1 chr11:61722673 5'GT 61722673 Upstream 29bp
chr11 61897298 61897298 1 + G A rs12281503 61897299 + 61897279 61897319 41 AGCCAGCTGAGCTCCCGACGCCTCCGCAGCAAGGACAGTGT AGCCAGCTGAGCTCCCGACACCTCCGCAGCAAGGACAGTGT < 41bp 1 0.0541205730089086 1 0.0987001061439514 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61897299 chr11:61897298 nonsynonymous SNV 0.807 0 20 hm5C_associated_SNPs_9219 0 0 1 0 1 INCENP chr11:61897254 3'AG 61897254 Downstream 45bp
chr11 61913144 61913144 1 + C T rs116462742 61913150 + 61913130 61913170 41 GGCCAAGAAAAAGGCGGCGGCCAAGAAGATGGAGGAGGTGG GGCCAAGAAAAAGGTGGCGGCCAAGAAGATGGAGGAGGTGG < 41bp 1 0.1073121460786 1 0.316228210926056 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61913150 chr11:61913144 nonsynonymous SNV 0.283 0 15 hm5C_associated_SNPs_9221 0 0 1 0 3 INCENP chr11:61913101 3'AG 61913101 Downstream 44bp
chr11 61913144 61913144 1 + C T rs116462742 61913150 + 61913130 61913170 41 GGCCAAGAAAAAGGCGGCGGCCAAGAAGATGGAGGAGGTGG GGCCAAGAAAAAGGTGGCGGCCAAGAAGATGGAGGAGGTGG < 41bp 1 0.1073121460786 1 0.316228210926056 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61913150 chr11:61913144 nonsynonymous SNV 0.283 0 15 hm5C_associated_SNPs_9221 0 0 1 0 3 INCENP chr11:61913223 5'GT 61913223 Upstream 80bp
chr11 61913144 61913144 1 + C T rs116462742 61913150 + 61913130 61913170 41 GGCCAAGAAAAAGGCGGCGGCCAAGAAGATGGAGGAGGTGG GGCCAAGAAAAAGGTGGCGGCCAAGAAGATGGAGGAGGTGG < 41bp 1 0.1073121460786 1 0.316228210926056 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61913150 chr11:61913144 nonsynonymous SNV 0.283 0 15 hm5C_associated_SNPs_9221 0 0 1 0 3 INCENP chr11:61913235 5'GT 61913235 Upstream 92bp
chr11 61913144 61913144 1 + C T rs116462742 61913151 + 61913131 61913171 41 GCCAAGAAAAAGGCGGCGGCCAAGAAGATGGAGGAGGTGGA GCCAAGAAAAAGGTGGCGGCCAAGAAGATGGAGGAGGTGGA < 41bp 1 0.624704787589879 1 0.785861968994141 experiment 0.750590424820242 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61913151 chr11:61913144 nonsynonymous SNV 0.283 0 14 hm5C_associated_SNPs_9222 0 0 1 0 3 INCENP chr11:61913101 3'AG 61913101 Downstream 44bp
chr11 61913144 61913144 1 + C T rs116462742 61913151 + 61913131 61913171 41 GCCAAGAAAAAGGCGGCGGCCAAGAAGATGGAGGAGGTGGA GCCAAGAAAAAGGTGGCGGCCAAGAAGATGGAGGAGGTGGA < 41bp 1 0.624704787589879 1 0.785861968994141 experiment 0.750590424820242 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61913151 chr11:61913144 nonsynonymous SNV 0.283 0 14 hm5C_associated_SNPs_9222 0 0 1 0 3 INCENP chr11:61913223 5'GT 61913223 Upstream 80bp
chr11 61913144 61913144 1 + C T rs116462742 61913151 + 61913131 61913171 41 GCCAAGAAAAAGGCGGCGGCCAAGAAGATGGAGGAGGTGGA GCCAAGAAAAAGGTGGCGGCCAAGAAGATGGAGGAGGTGGA < 41bp 1 0.624704787589879 1 0.785861968994141 experiment 0.750590424820242 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61913151 chr11:61913144 nonsynonymous SNV 0.283 0 14 hm5C_associated_SNPs_9222 0 0 1 0 3 INCENP chr11:61913235 5'GT 61913235 Upstream 92bp
chr11 62550237 62550237 1 + T G rs139505440 62550249 + 62550229 62550269 41 GCAGATCCTGTGCGGCCGCTCTGCTGCCACTATGGAGCCGT GCAGATCCGGTGCGGCCGCTCTGCTGCCACTATGGAGCCGT < 41bp 1 0.754953515816494 1 0.516953408718109 experiment 0.490092968367013 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF6L ENSG00000162227 CDS Human protein_coding chr11:62550249 chr11:62550237 synonymous SNV . 0 9 hm5C_associated_SNPs_9225 0 0 1 0 2 TAF6L chr11:62550165 3'AG 62550165 Downstream 73bp
chr11 62550237 62550237 1 + T G rs139505440 62550249 + 62550229 62550269 41 GCAGATCCTGTGCGGCCGCTCTGCTGCCACTATGGAGCCGT GCAGATCCGGTGCGGCCGCTCTGCTGCCACTATGGAGCCGT < 41bp 1 0.754953515816494 1 0.516953408718109 experiment 0.490092968367013 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF6L ENSG00000162227 CDS Human protein_coding chr11:62550249 chr11:62550237 synonymous SNV . 0 9 hm5C_associated_SNPs_9225 0 0 1 0 2 TAF6L chr11:62550297 5'GT 62550297 Upstream 61bp
chr11 62655900 62655900 1 + C T rs150311954 62655920 + 62655900 62655940 41 CGTTCTCCGCTGGGCCTGGACTCTTCTCCTATATCCGCCAC TGTTCTCCGCTGGGCCTGGACTCTTCTCCTATATCCGCCAC < 41bp 1 0.43210905171628 1 0.23368838429451 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62655920 chr11:62655900 nonsynonymous SNV 0.001 1 1 hm5C_associated_SNPs_9226 0 0 1 0 1 SLC3A2 chr11:62655803 3'AG 62655803 Downstream 98bp
chr11 63586472 63586472 1 + C T rs189841854 63586469 + 63586449 63586489 41 TCCCCGGGCGGAGAGCCCCTCTCCAGGTGAGCCCTCCTGAG TCCCCGGGCGGAGAGCCCCTCTCTAGGTGAGCCCTCCTGAG < 41bp 1 0.695306524294986 1 0.742794454097748 experiment 0.609386951410029 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control C11orf84 ENSG00000168005 CDS Human protein_coding chr11:63586469 chr11:63586472 nonsynonymous SNV 0.802 2 24 hm5C_associated_SNPs_9236 0 0 1 0 1 C11orf84 chr11:63586474 5'GT 63586474 Upstream 3bp
chr11 63676415 63676415 1 + C T rs371393398 63676421 + 63676401 63676441 41 GAGGCCAAGCCCCGCTCCCTCCGCTTCACGTGGAGTATGAA GAGGCCAAGCCCCGTTCCCTCCGCTTCACGTGGAGTATGAA < 41bp 1 0.123937717030445 1 0.230584710836411 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MARK2 ENSG00000072518 CDS Human protein_coding chr11:63676421 chr11:63676415 synonymous SNV . 0 15 hm5C_associated_SNPs_9237 0 0 1 0 1 MARK2 chr11:63676349 3'AG 63676349 Downstream 67bp
chr11 63706481 63706481 1 + C T rs549363738 63706472 + 63706452 63706492 41 GGCGCATGCGCGTTGCAGGGCCGTCCGCTCTGCTGCCGCCG GGCGCATGCGCGTTGCAGGGCCGTCCGCTTTGCTGCCGCCG < 41bp 1 0.165067350160893 1 0.103573083877563 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NAA40 ENSG00000110583 UTR5 Human protein_coding chr11:63706472 chr11:63706481 . . 0 30 hm5C_associated_SNPs_9240 0 0 1 0 1 NAA40 chr11:63706574 5'GT 63706574 Upstream 94bp
chr11 63706481 63706481 1 + C T rs549363738 63706484 + 63706464 63706504 41 TTGCAGGGCCGTCCGCTCTGCTGCCGCCGCTGTTGCAGCCA TTGCAGGGCCGTCCGCTTTGCTGCCGCCGCTGTTGCAGCCA < 41bp 1 0.595150775583185 1 0.359370648860931 experiment 0.809698448833631 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAA40 ENSG00000110583 UTR5 Human protein_coding chr11:63706484 chr11:63706481 . . 0 18 hm5C_associated_SNPs_9241 0 0 1 0 1 NAA40 chr11:63706574 5'GT 63706574 Upstream 94bp
chr11 63706504 63706504 1 + A G rs3903058 63706484 + 63706464 63706504 41 TTGCAGGGCCGTCCGCTCTGCTGCCGCCGCTGTTGCAGCCA TTGCAGGGCCGTCCGCTCTGCTGCCGCCGCTGTTGCAGCCG < 41bp 1 0.528556766048908 1 0.378329634666443 experiment 0.942886467902184 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAA40 ENSG00000110583 UTR5 Human protein_coding chr11:63706484 chr11:63706504 . . 0 41 hm5C_associated_SNPs_9242 0 0 1 0 1 NAA40 chr11:63706574 5'GT 63706574 Upstream 71bp
chr11 63996995 63996995 1 + G T rs185358682 63997000 + 63996980 63997020 41 GCACTACCTGAGTGGGGGACCCGAGGCCCACGAGTCTACAG GCACTACCTGAGTGGTGGACCCGAGGCCCACGAGTCTACAG < 41bp 1 0.435589982712538 1 0.848198175430298 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997000 chr11:63996995 synonymous SNV . 0 16 hm5C_associated_SNPs_9251 0 0 0 0 2 NUDT22 chr11:63996950 3'AG 63996950 Downstream 46bp
chr11 63996995 63996995 1 + G T rs185358682 63997000 + 63996980 63997020 41 GCACTACCTGAGTGGGGGACCCGAGGCCCACGAGTCTACAG GCACTACCTGAGTGGTGGACCCGAGGCCCACGAGTCTACAG < 41bp 1 0.435589982712538 1 0.848198175430298 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997000 chr11:63996995 synonymous SNV . 0 16 hm5C_associated_SNPs_9251 0 0 0 0 2 NUDT22 chr11:63997043 5'GT 63997043 Upstream 49bp
chr11 63997329 63997329 1 + A G rs633561 63997328 + 63997308 63997348 41 TTGTCTCCCCACAGAACGTGCAGAGATTGCTCGAGACGGAG TTGTCTCCCCACAGAACGTGCGGAGATTGCTCGAGACGGAG < 41bp 1 0.412693872490584 1 0.211470305919647 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997328 chr11:63997329 nonsynonymous SNV 0.007 0 22 hm5C_associated_SNPs_9252 0 0 0 0 1 NUDT22 chr11:63997322 3'AG 63997322 Downstream 8bp
chr11 63997338 63997338 1 + T C rs633557 63997328 + 63997308 63997348 41 TTGTCTCCCCACAGAACGTGCAGAGATTGCTCGAGACGGAG TTGTCTCCCCACAGAACGTGCAGAGATTGCCCGAGACGGAG < 41bp 1 0.417004265987063 1 0.110736429691315 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997328 chr11:63997338 nonsynonymous SNV 0.166 0 31 hm5C_associated_SNPs_9253 0 0 0 0 1 NUDT22 chr11:63997322 3'AG 63997322 Downstream 17bp
chr11 64022459 64022459 1 + A G rs632439 64022456 + 64022436 64022476 41 ACGGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTT ACGGTGGTGTCTGGGCCAGACCCGGTGAACACAGTGTTCTT < 41bp 1 0.595515896868531 1 0.13567578792572 experiment 0.808968206262939 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022456 chr11:64022459 synonymous SNV . 0 24 hm5C_associated_SNPs_9254 0 0 1 0 3 PLCB3 chr11:64022370 3'AG 64022370 Downstream 90bp
chr11 64022459 64022459 1 + A G rs632439 64022456 + 64022436 64022476 41 ACGGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTT ACGGTGGTGTCTGGGCCAGACCCGGTGAACACAGTGTTCTT < 41bp 1 0.595515896868531 1 0.13567578792572 experiment 0.808968206262939 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022456 chr11:64022459 synonymous SNV . 0 24 hm5C_associated_SNPs_9254 0 0 1 0 3 PLCB3 chr11:64022424 3'AG 64022424 Downstream 36bp
chr11 64022459 64022459 1 + A G rs632439 64022456 + 64022436 64022476 41 ACGGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTT ACGGTGGTGTCTGGGCCAGACCCGGTGAACACAGTGTTCTT < 41bp 1 0.595515896868531 1 0.13567578792572 experiment 0.808968206262939 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022456 chr11:64022459 synonymous SNV . 0 24 hm5C_associated_SNPs_9254 0 0 1 0 3 PLCB3 chr11:64022510 5'GT 64022510 Upstream 52bp
chr11 64022459 64022459 1 + A G rs632439 64022457 + 64022437 64022477 41 CGGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTTG CGGTGGTGTCTGGGCCAGACCCGGTGAACACAGTGTTCTTG < 41bp 1 0.4716461663343 1 0.641737222671509 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022457 chr11:64022459 synonymous SNV . 0 23 hm5C_associated_SNPs_9255 0 0 1 0 3 PLCB3 chr11:64022370 3'AG 64022370 Downstream 90bp
chr11 64022459 64022459 1 + A G rs632439 64022457 + 64022437 64022477 41 CGGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTTG CGGTGGTGTCTGGGCCAGACCCGGTGAACACAGTGTTCTTG < 41bp 1 0.4716461663343 1 0.641737222671509 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022457 chr11:64022459 synonymous SNV . 0 23 hm5C_associated_SNPs_9255 0 0 1 0 3 PLCB3 chr11:64022424 3'AG 64022424 Downstream 36bp
chr11 64022459 64022459 1 + A G rs632439 64022457 + 64022437 64022477 41 CGGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTTG CGGTGGTGTCTGGGCCAGACCCGGTGAACACAGTGTTCTTG < 41bp 1 0.4716461663343 1 0.641737222671509 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022457 chr11:64022459 synonymous SNV . 0 23 hm5C_associated_SNPs_9255 0 0 1 0 3 PLCB3 chr11:64022510 5'GT 64022510 Upstream 52bp
chr11 64022459 64022459 1 + A G rs632439 64022458 + 64022438 64022478 41 GGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTTGA GGTGGTGTCTGGGCCAGACCCGGTGAACACAGTGTTCTTGA < 41bp 1 0.667029720634702 1 0.793699741363525 experiment 0.665940558730597 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022458 chr11:64022459 synonymous SNV . 0 22 hm5C_associated_SNPs_9256 0 0 1 0 3 PLCB3 chr11:64022370 3'AG 64022370 Downstream 90bp
chr11 64022459 64022459 1 + A G rs632439 64022458 + 64022438 64022478 41 GGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTTGA GGTGGTGTCTGGGCCAGACCCGGTGAACACAGTGTTCTTGA < 41bp 1 0.667029720634702 1 0.793699741363525 experiment 0.665940558730597 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022458 chr11:64022459 synonymous SNV . 0 22 hm5C_associated_SNPs_9256 0 0 1 0 3 PLCB3 chr11:64022424 3'AG 64022424 Downstream 36bp
chr11 64022459 64022459 1 + A G rs632439 64022458 + 64022438 64022478 41 GGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTTGA GGTGGTGTCTGGGCCAGACCCGGTGAACACAGTGTTCTTGA < 41bp 1 0.667029720634702 1 0.793699741363525 experiment 0.665940558730597 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022458 chr11:64022459 synonymous SNV . 0 22 hm5C_associated_SNPs_9256 0 0 1 0 3 PLCB3 chr11:64022510 5'GT 64022510 Upstream 52bp
chr11 64023875 64023875 1 + G A rs200770371 64023887 + 64023867 64023907 41 TACCTGACGCTGGAGCAGCTCATGGACTTCATCAACCAGAA TACCTGACACTGGAGCAGCTCATGGACTTCATCAACCAGAA < 41bp 1 0.344766396120097 1 0.260107427835464 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64023887 chr11:64023875 synonymous SNV . 0 9 hm5C_associated_SNPs_9257 0 0 0 0 1 PLCB3 chr11:64023848 3'AG 64023848 Downstream 28bp
chr11 64033454 64033454 1 + G A rs34677667 64033434 + 64033414 64033454 41 ATCAGGAGTTCCAGAACAGACAGGTGCAGAGCCTGCTGGAG ATCAGGAGTTCCAGAACAGACAGGTGCAGAGCCTGCTGGAA < 41bp 1 0.640721046738886 1 0.826090216636658 experiment 0.718557906522228 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64033434 chr11:64033454 synonymous SNV . 0 41 hm5C_associated_SNPs_9258 0 0 1 0 2 PLCB3 chr11:64033358 3'AG 64033358 Downstream 97bp
chr11 64033454 64033454 1 + G A rs34677667 64033434 + 64033414 64033454 41 ATCAGGAGTTCCAGAACAGACAGGTGCAGAGCCTGCTGGAG ATCAGGAGTTCCAGAACAGACAGGTGCAGAGCCTGCTGGAA < 41bp 1 0.640721046738886 1 0.826090216636658 experiment 0.718557906522228 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64033434 chr11:64033454 synonymous SNV . 0 41 hm5C_associated_SNPs_9258 0 0 1 0 2 PLCB3 chr11:64033511 5'GT 64033511 Upstream 58bp
chr11 64085785 64085785 1 + A C rs7938623 64085786 + 64085766 64085806 41 GCAGCGGCAGCAAGACGGTACAGTGAAGGAGAGTGGGCGTC GCAGCGGCAGCAAGACGGTCCAGTGAAGGAGAGTGGGCGTC < 41bp 1 0.609453183853867 1 0.436954915523529 experiment 0.781093632292265 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRDX5 ENSG00000126432 CDS Human protein_coding chr11:64085786 chr11:64085785 nonsynonymous SNV 0.000 0 20 hm5C_associated_SNPs_9260 0 0 1 0 1 PRDX5 chr11:64085858 5'GT 64085858 Upstream 74bp
chr11 64118648 64118648 1 + C A rs74794644 64118643 + 64118623 64118663 41 TCCTTGCAGCTGCGCCAGGGCCCCGCGGGGCTGGGGCCCAA TCCTTGCAGCTGCGCCAGGGCCCCGAGGGGCTGGGGCCCAA < 41bp 1 0.34414626679963 1 0.307618260383606 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64118643 chr11:64118648 nonsynonymous SNV 0.000 0 26 hm5C_associated_SNPs_9261 0 0 1 0 1 CCDC88B chr11:64118632 3'AG 64118632 Downstream 17bp
chr11 64118648 64118648 1 + C A rs74794644 64118644 + 64118624 64118664 41 CCTTGCAGCTGCGCCAGGGCCCCGCGGGGCTGGGGCCCAAA CCTTGCAGCTGCGCCAGGGCCCCGAGGGGCTGGGGCCCAAA < 41bp 1 0.638652732247555 1 0.491565108299255 experiment 0.722694535504889 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64118644 chr11:64118648 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_9262 0 0 1 0 1 CCDC88B chr11:64118632 3'AG 64118632 Downstream 17bp
chr11 64118648 64118648 1 + C A rs74794644 64118645 + 64118625 64118665 41 CTTGCAGCTGCGCCAGGGCCCCGCGGGGCTGGGGCCCAAAA CTTGCAGCTGCGCCAGGGCCCCGAGGGGCTGGGGCCCAAAA < 41bp 1 0.344016457781117 1 0.726678848266602 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64118645 chr11:64118648 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_9263 0 0 1 0 1 CCDC88B chr11:64118632 3'AG 64118632 Downstream 17bp
chr11 64118648 64118648 1 + C A rs74794644 64118646 + 64118626 64118666 41 TTGCAGCTGCGCCAGGGCCCCGCGGGGCTGGGGCCCAAAAA TTGCAGCTGCGCCAGGGCCCCGAGGGGCTGGGGCCCAAAAA < 41bp 1 0.696039920172116 1 0.930471420288086 experiment 0.607920159655768 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64118646 chr11:64118648 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_9264 0 0 1 0 1 CCDC88B chr11:64118632 3'AG 64118632 Downstream 17bp
chr11 64118648 64118648 1 + C A rs74794644 64118659 + 64118639 64118679 41 AGGGCCCCGCGGGGCTGGGGCCCAAAAAGCGTGCGGAGCCT AGGGCCCCGAGGGGCTGGGGCCCAAAAAGCGTGCGGAGCCT < 41bp 1 0.285406871069536 1 0.222722381353378 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64118659 chr11:64118648 nonsynonymous SNV 0.000 0 10 hm5C_associated_SNPs_9265 0 0 1 0 1 CCDC88B chr11:64118632 3'AG 64118632 Downstream 17bp
chr11 64118648 64118648 1 + C A rs74794644 64118660 + 64118640 64118680 41 GGGCCCCGCGGGGCTGGGGCCCAAAAAGCGTGCGGAGCCTC GGGCCCCGAGGGGCTGGGGCCCAAAAAGCGTGCGGAGCCTC < 41bp 1 0.280100005710663 1 0.2069251537323 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64118660 chr11:64118648 nonsynonymous SNV 0.000 0 9 hm5C_associated_SNPs_9266 0 0 1 0 1 CCDC88B chr11:64118632 3'AG 64118632 Downstream 17bp
chr11 64118648 64118648 1 + C A rs74794644 64118661 + 64118641 64118681 41 GGCCCCGCGGGGCTGGGGCCCAAAAAGCGTGCGGAGCCTCA GGCCCCGAGGGGCTGGGGCCCAAAAAGCGTGCGGAGCCTCA < 41bp 1 0.493430113040393 1 0.782831370830536 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64118661 chr11:64118648 nonsynonymous SNV 0.000 0 8 hm5C_associated_SNPs_9267 0 0 1 0 1 CCDC88B chr11:64118632 3'AG 64118632 Downstream 17bp
chr11 64132904 64132904 1 + C G rs139579817 64132923 + 64132903 64132943 41 GCAGCCCCCCACCTGGGGACCCCCGAATCTTTCAGGTGAGG GGAGCCCCCCACCTGGGGACCCCCGAATCTTTCAGGTGAGG < 41bp 1 0.0998332173244117 1 0.104589462280273 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64132923 chr11:64132904 synonymous SNV . 0 2 hm5C_associated_SNPs_9268 0 0 1 0 1 RPS6KA4 chr11:64132937 5'GT 64132937 Upstream 34bp
chr11 64879480 64879480 1 + C T rs182060338 64879492 + 64879472 64879512 41 CGGCGGAGCGGAGACCATGGCCCCCACTCAGGGCCCCCGGG CGGCGGAGTGGAGACCATGGCCCCCACTCAGGGCCCCCGGG < 41bp 1 0.149607688138056 1 0.141787767410278 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TM7SF2 ENSG00000149809 UTR5 Human protein_coding chr11:64879492 chr11:64879480 . . 0 9 hm5C_associated_SNPs_9283 0 0 1 0 1 TM7SF2 chr11:64879539 5'GT 64879539 Upstream 60bp
chr11 64950970 64950970 1 + C G rs17583 64950967 + 64950947 64950987 41 GACTGCTGGCTCTTGGCGGCCATCGCCTCCCTCACTCTCAA GACTGCTGGCTCTTGGCGGCCATGGCCTCCCTCACTCTCAA < 41bp 1 0.389570174837439 1 0.234102785587311 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64950967 chr11:64950970 nonsynonymous SNV 0.955 4 24 hm5C_associated_SNPs_9291 0 0 1 0 2 CAPN1 chr11:64950945 3'AG 64950945 Downstream 26bp
chr11 64950970 64950970 1 + C G rs17583 64950967 + 64950947 64950987 41 GACTGCTGGCTCTTGGCGGCCATCGCCTCCCTCACTCTCAA GACTGCTGGCTCTTGGCGGCCATGGCCTCCCTCACTCTCAA < 41bp 1 0.389570174837439 1 0.234102785587311 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64950967 chr11:64950970 nonsynonymous SNV 0.955 4 24 hm5C_associated_SNPs_9291 0 0 1 0 2 CAPN1 chr11:64951063 5'GT 64951063 Upstream 94bp
chr11 65063455 65063455 1 + C T rs34997862 65063444 + 65063424 65063464 41 TCCTCATCATCCCGTCAGAGCTGAGGTACTTCGTGAAGGTA TCCTCATCATCCCGTCAGAGCTGAGGTACTTTGTGAAGGTA < 41bp 1 0.375710316429751 1 0.169110208749771 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control POLA2 ENSG00000014138 CDS Human protein_coding chr11:65063444 chr11:65063455 synonymous SNV . 0 32 hm5C_associated_SNPs_9294 0 0 1 0 1 POLA2 chr11:65063461 5'GT 65063461 Upstream 7bp
chr11 65338930 65338930 1 + C A rs538598804 65338926 + 65338906 65338946 41 CTGGCCTCAGCCTCAGAGCTCCCCCTGGGCTCTCGACCTGC CTGGCCTCAGCCTCAGAGCTCCCCATGGGCTCTCGACCTGC < 41bp 1 0.693776804293176 1 0.0678026378154755 experiment 0.612446391413648 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SSSCA1 ENSG00000173465 CDS Human protein_coding chr11:65338926 chr11:65338930 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_9334 0 0 0 0 1 SSSCA1 chr11:65338862 3'AG 65338862 Downstream 69bp
chr11 65338944 65338944 1 + T G rs2236684 65338926 + 65338906 65338946 41 CTGGCCTCAGCCTCAGAGCTCCCCCTGGGCTCTCGACCTGC CTGGCCTCAGCCTCAGAGCTCCCCCTGGGCTCTCGACCGGC < 41bp 1 0.263611678759138 1 0.0414341986179352 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SSSCA1 ENSG00000173465 CDS Human protein_coding chr11:65338926 chr11:65338944 synonymous SNV . 0 39 hm5C_associated_SNPs_9335 0 0 0 0 1 SSSCA1 chr11:65338862 3'AG 65338862 Downstream 83bp
chr11 65392695 65392695 1 + C T rs1205259 65392705 + 65392685 65392725 41 TCTGTGGCCTCCTGGTGGCACTGTCCTACCACCTGAGCCGG TCTGTGGCCTTCTGGTGGCACTGTCCTACCACCTGAGCCGG < 41bp 1 0.122264893552876 1 0.336008191108704 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65392705 chr11:65392695 synonymous SNV . 0 11 hm5C_associated_SNPs_9367 0 0 1 0 2 PCNX3 chr11:65392642 3'AG 65392642 Downstream 54bp
chr11 65392695 65392695 1 + C T rs1205259 65392705 + 65392685 65392725 41 TCTGTGGCCTCCTGGTGGCACTGTCCTACCACCTGAGCCGG TCTGTGGCCTTCTGGTGGCACTGTCCTACCACCTGAGCCGG < 41bp 1 0.122264893552876 1 0.336008191108704 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65392705 chr11:65392695 synonymous SNV . 0 11 hm5C_associated_SNPs_9367 0 0 1 0 2 PCNX3 chr11:65392751 5'GT 65392751 Upstream 57bp
chr11 65392704 65392704 1 + A G rs187327032 65392705 + 65392685 65392725 41 TCTGTGGCCTCCTGGTGGCACTGTCCTACCACCTGAGCCGG TCTGTGGCCTCCTGGTGGCGCTGTCCTACCACCTGAGCCGG < 41bp 1 0.101832033498515 1 0.470705837011337 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65392705 chr11:65392704 synonymous SNV . 0 20 hm5C_associated_SNPs_9368 0 0 1 0 2 PCNX3 chr11:65392642 3'AG 65392642 Downstream 63bp
chr11 65392704 65392704 1 + A G rs187327032 65392705 + 65392685 65392725 41 TCTGTGGCCTCCTGGTGGCACTGTCCTACCACCTGAGCCGG TCTGTGGCCTCCTGGTGGCGCTGTCCTACCACCTGAGCCGG < 41bp 1 0.101832033498515 1 0.470705837011337 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65392705 chr11:65392704 synonymous SNV . 0 20 hm5C_associated_SNPs_9368 0 0 1 0 2 PCNX3 chr11:65392751 5'GT 65392751 Upstream 48bp
chr11 65392725 65392725 1 + G A rs61742865 65392705 + 65392685 65392725 41 TCTGTGGCCTCCTGGTGGCACTGTCCTACCACCTGAGCCGG TCTGTGGCCTCCTGGTGGCACTGTCCTACCACCTGAGCCGA < 41bp 1 0.118622157593583 1 0.441289871931076 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65392705 chr11:65392725 synonymous SNV . 0 41 hm5C_associated_SNPs_9369 0 0 1 0 2 PCNX3 chr11:65392642 3'AG 65392642 Downstream 84bp
chr11 65392725 65392725 1 + G A rs61742865 65392705 + 65392685 65392725 41 TCTGTGGCCTCCTGGTGGCACTGTCCTACCACCTGAGCCGG TCTGTGGCCTCCTGGTGGCACTGTCCTACCACCTGAGCCGA < 41bp 1 0.118622157593583 1 0.441289871931076 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65392705 chr11:65392725 synonymous SNV . 0 41 hm5C_associated_SNPs_9369 0 0 1 0 2 PCNX3 chr11:65392751 5'GT 65392751 Upstream 27bp
chr11 65402862 65402862 1 + C T rs200153485 65402842 + 65402822 65402862 41 CCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCCTCC CCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCCTCT < 41bp 1 0.0755983260150582 1 0.321373760700226 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402842 chr11:65402862 synonymous SNV . 0 41 hm5C_associated_SNPs_9370 0 0 1 0 1 PCNX3 chr11:65402919 5'GT 65402919 Upstream 58bp
chr11 65733393 65733393 1 + C T rs688862 65733404 + 65733384 65733424 41 GGGCCTCACCGTGGAGCATGCCATTGATTCCTTCCGAGAAG GGGCCTCACTGTGGAGCATGCCATTGATTCCTTCCGAGAAG < 41bp 1 0.0795384781211097 1 0.0569166243076324 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SART1 ENSG00000175467 CDS Human protein_coding chr11:65733404 chr11:65733393 synonymous SNV . 0 10 hm5C_associated_SNPs_9394 0 0 1 0 2 SART1 chr11:65733358 3'AG 65733358 Downstream 36bp
chr11 65733393 65733393 1 + C T rs688862 65733404 + 65733384 65733424 41 GGGCCTCACCGTGGAGCATGCCATTGATTCCTTCCGAGAAG GGGCCTCACTGTGGAGCATGCCATTGATTCCTTCCGAGAAG < 41bp 1 0.0795384781211097 1 0.0569166243076324 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SART1 ENSG00000175467 CDS Human protein_coding chr11:65733404 chr11:65733393 synonymous SNV . 0 10 hm5C_associated_SNPs_9394 0 0 1 0 2 SART1 chr11:65733457 5'GT 65733457 Upstream 65bp
chr11 66033999 66033999 1 + G A rs370619951 66034001 + 66033981 66034021 41 TGGGCACTGGGCAGCTGCGGCCGGGGCTGCATGCGTGCTGC TGGGCACTGGGCAGCTGCAGCCGGGGCTGCATGCGTGCTGC < 41bp 1 0.771635949766097 1 0.866101503372192 experiment 0.456728100467806 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC2 ENSG00000174996 CDS Human protein_coding chr11:66034001 chr11:66033999 nonsynonymous SNV 0.001 1 19 hm5C_associated_SNPs_9397 0 0 1 0 1 KLC2 chr11:66033904 3'AG 66033904 Downstream 96bp
chr11 66234468 66234468 1 + C A rs544968300 66234474 + 66234454 66234494 41 AGGCGGGGAGGGAGCGGCGCCCAGCGGGGCCCGGAGCGTGG AGGCGGGGAGGGAGAGGCGCCCAGCGGGGCCCGGAGCGTGG < 41bp 1 0.539577765338408 1 0.431431829929352 experiment 0.920844469323184 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PELI3 ENSG00000174516 UTR5 Human protein_coding chr11:66234474 chr11:66234468 . . 0 15 hm5C_associated_SNPs_9401 0 0 1 0 1 PELI3 chr11:66234498 5'GT 66234498 Upstream 31bp
chr11 66247844 66247844 1 + G A rs2279864 66247841 + 66247821 66247861 41 GCCCATCCGGACCCCGAGGCCAGGCAGTTGGCCAAGGGGGG GCCCATCCGGACCCCGAGGCCAGACAGTTGGCCAAGGGGGG < 41bp 1 0.379472046035204 1 0.493401706218719 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DPP3 ENSG00000254986 UTR5 Human protein_coding chr11:66247841 chr11:66247844 . . 0 24 hm5C_associated_SNPs_9402 0 0 0 0 1 DPP3 chr11:66247936 5'GT 66247936 Upstream 93bp
chr11 66247857 66247857 1 + G C rs201142853 66247841 + 66247821 66247861 41 GCCCATCCGGACCCCGAGGCCAGGCAGTTGGCCAAGGGGGG GCCCATCCGGACCCCGAGGCCAGGCAGTTGGCCAAGCGGGG < 41bp 1 0.56064184337733 1 0.690430879592896 experiment 0.87871631324534 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DPP3 ENSG00000254986 UTR5 Human protein_coding chr11:66247841 chr11:66247857 . . 0 37 hm5C_associated_SNPs_9403 0 0 0 0 1 DPP3 chr11:66247936 5'GT 66247936 Upstream 80bp
chr11 66261044 66261044 1 + C A rs76777675 66261037 + 66261017 66261057 41 GTACATCCTCTGGAAGGGGCCCTCCTTCGATGTGCAGGTGG GTACATCCTCTGGAAGGGGCCCTCCTTAGATGTGCAGGTGG < 41bp 1 0.0544374634452073 1 0.172056615352631 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66261037 chr11:66261044 nonsynonymous SNV 0.988 4 28 hm5C_associated_SNPs_9404 0 0 1 0 2 DPP3 chr11:66261012 3'AG 66261012 Downstream 33bp
chr11 66261044 66261044 1 + C A rs76777675 66261037 + 66261017 66261057 41 GTACATCCTCTGGAAGGGGCCCTCCTTCGATGTGCAGGTGG GTACATCCTCTGGAAGGGGCCCTCCTTAGATGTGCAGGTGG < 41bp 1 0.0544374634452073 1 0.172056615352631 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66261037 chr11:66261044 nonsynonymous SNV 0.988 4 28 hm5C_associated_SNPs_9404 0 0 1 0 2 DPP3 chr11:66261104 5'GT 66261104 Upstream 61bp
chr11 66282095 66282095 1 + G A rs2298806 66282089 + 66282069 66282109 41 CTCAGACCCTACTTCAAGTTCAGCCTGCCCCAATTGCCTCC CTCAGACCCTACTTCAAGTTCAGCCTACCCCAATTGCCTCC < 41bp 1 0.363286696133671 1 0.198149591684341 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66282089 chr11:66282095 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_9405 2 0 0 0 1 BBS1 chr11:66282149 5'GT 66282149 Upstream 55bp
chr11 66294133 66294133 1 + C A rs200577824 66294153 + 66294133 66294173 41 CATCAAGATCCTGAAGCGTACAGCAGTGTTTGTAGAGGGAG AATCAAGATCCTGAAGCGTACAGCAGTGTTTGTAGAGGGAG < 41bp 1 0.749913655901958 1 0.157460719347 experiment 0.500172688196084 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66294153 chr11:66294133 synonymous SNV . 0 1 hm5C_associated_SNPs_9406 1 0 1 0 1 BBS1 chr11:66294120 3'AG 66294120 Downstream 14bp
chr11 66610645 66610645 1 + G C rs7570 66610663 + 66610643 66610683 41 GTGCTGTGGCTGCAGGAGGTCTCCAACCTGTCAGAGTGGCT GTCCTGTGGCTGCAGGAGGTCTCCAACCTGTCAGAGTGGCT < 41bp 1 0.64403005776287 1 0.884185910224915 experiment 0.71193988447426 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout C11orf80 ENSG00000173715 CDS Human protein_coding chr11:66610663 chr11:66610645 synonymous SNV . 0 3 hm5C_associated_SNPs_9408 0 1 1 0 1 C11orf80 chr11:66610640 3'AG 66610640 Downstream 6bp
chr11 67075197 67075197 1 + C T rs79688961 67075191 + 67075171 67075211 41 CTGGAGTCTCTGCGGCCTCCCAGCGCCGAGCCTGGCGGGTC CTGGAGTCTCTGCGGCCTCCCAGCGCTGAGCCTGGCGGGTC < 41bp 1 0.745876585959557 1 0.747757315635681 experiment 0.508246828080887 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075191 chr11:67075197 synonymous SNV . 0 27 hm5C_associated_SNPs_9413 0 0 0 0 1 SSH3 chr11:67075208 5'GT 67075208 Upstream 12bp
chr11 67075207 67075207 1 + G A rs61731782 67075191 + 67075171 67075211 41 CTGGAGTCTCTGCGGCCTCCCAGCGCCGAGCCTGGCGGGTC CTGGAGTCTCTGCGGCCTCCCAGCGCCGAGCCTGGCAGGTC < 41bp 1 0.65803036849201 1 0.788802266120911 experiment 0.68393926301598 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075191 chr11:67075207 nonsynonymous SNV 0.109 0 37 hm5C_associated_SNPs_9414 0 0 0 0 1 SSH3 chr11:67075208 5'GT 67075208 Upstream 2bp
chr11 67202552 67202552 1 + C T rs373972783 67202549 + 67202529 67202569 41 TCTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG TCTACCTCCACTCCTGCCACCGCTGCCGCCCTCGACCACCG < 41bp 1 0.575132985388705 1 0.445396244525909 experiment 0.849734029222589 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202549 chr11:67202552 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_9419 0 0 1 0 1 RPS6KB2 chr11:67202460 3'AG 67202460 Downstream 93bp
chr11 67202552 67202552 1 + C T rs373972783 67202551 + 67202531 67202571 41 TACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCGCC TACCTCCACTCCTGCCACCGCTGCCGCCCTCGACCACCGCC < 41bp 1 0.560757328794588 1 0.244651317596436 experiment 0.878485342410824 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202551 chr11:67202552 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_9420 0 0 1 0 1 RPS6KB2 chr11:67202460 3'AG 67202460 Downstream 93bp
chr11 67202552 67202552 1 + C T rs373972783 67202555 + 67202535 67202575 41 TCCACTCCTGCCACCGCCGCCGCCCTCGACCACCGCCCCTC TCCACTCCTGCCACCGCTGCCGCCCTCGACCACCGCCCCTC < 41bp 1 0.707360956814221 1 0.17332261800766 experiment 0.585278086371559 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202555 chr11:67202552 nonsynonymous SNV 0.000 0 18 hm5C_associated_SNPs_9421 0 0 1 0 1 RPS6KB2 chr11:67202460 3'AG 67202460 Downstream 93bp
chr11 67351297 67351297 1 + G A rs8191439 67351282 + 67351262 67351302 41 CTCGGAGGCCGCGAGGCCTTCGCTGGAGTTTCGCCGCCGCA CTCGGAGGCCGCGAGGCCTTCGCTGGAGTTTCGCCACCGCA < 41bp 1 0.661713269935065 1 0.333990514278412 experiment 0.67657346012987 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GSTP1 ENSG00000084207 UTR5 Human protein_coding chr11:67351282 chr11:67351297 . . 0 36 hm5C_associated_SNPs_9423 0 0 1 0 1 GSTP1 chr11:67351315 5'GT 67351315 Upstream 19bp
chr11 67353669 67353669 1 + T C rs199949339 67353680 + 67353660 67353700 41 AGACCTTCATTGTGGGAGACCAGGTGAGCATCTGGCCCCAT AGACCTTCACTGTGGGAGACCAGGTGAGCATCTGGCCCCAT < 41bp 1 0.702314923547 1 0.81816565990448 experiment 0.595370152906 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67353680 chr11:67353669 nonsynonymous SNV 0.862 3 10 hm5C_associated_SNPs_9424 0 0 1 0 2 GSTP1 chr11:67353575 3'AG 67353575 Downstream 95bp
chr11 67353669 67353669 1 + T C rs199949339 67353680 + 67353660 67353700 41 AGACCTTCATTGTGGGAGACCAGGTGAGCATCTGGCCCCAT AGACCTTCACTGTGGGAGACCAGGTGAGCATCTGGCCCCAT < 41bp 1 0.702314923547 1 0.81816565990448 experiment 0.595370152906 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67353680 chr11:67353669 nonsynonymous SNV 0.862 3 10 hm5C_associated_SNPs_9424 0 0 1 0 2 GSTP1 chr11:67353682 5'GT 67353682 Upstream 14bp
chr11 67376950 67376950 1 + C T rs199702939 67376960 + 67376940 67376980 41 TGAACGCAGACGAGGGGGAGCCGGGCACCTGCAAGGACCGG TGAACGCAGATGAGGGGGAGCCGGGCACCTGCAAGGACCGG < 41bp 1 0.479131435807125 1 0.704970061779022 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67376960 chr11:67376950 synonymous SNV . 0 11 hm5C_associated_SNPs_9429 1 0 1 0 1 NDUFV1 chr11:67376923 3'AG 67376923 Downstream 28bp
chr11 67376962 67376962 1 + G A rs140445386 67376960 + 67376940 67376980 41 TGAACGCAGACGAGGGGGAGCCGGGCACCTGCAAGGACCGG TGAACGCAGACGAGGGGGAGCCAGGCACCTGCAAGGACCGG < 41bp 1 0.330606336884819 1 0.551296830177307 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67376960 chr11:67376962 synonymous SNV . 0 23 hm5C_associated_SNPs_9430 3 0 1 0 1 NDUFV1 chr11:67376923 3'AG 67376923 Downstream 40bp
chr11 67782827 67782827 1 + G A rs308293 67782828 + 67782808 67782848 41 CCTTCCACGCGGGGCGCACGCGGCCAGCTGAGTTCCGGGCT CCTTCCACGCGGGGCGCACACGGCCAGCTGAGTTCCGGGCT < 41bp 1 0.692164349820631 1 0.233680784702301 experiment 0.615671300358738 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67782828 chr11:67782827 synonymous SNV . 0 20 hm5C_associated_SNPs_9431 0 0 0 0 1 ALDH3B1 chr11:67782767 3'AG 67782767 Downstream 61bp
chr11 67786061 67786061 1 + G A rs529954694 67786067 + 67786047 67786087 41 CACCCTGGCCCTCAGGAACTCCGGGCCTGGATGAAGGACGA CACCCTGGCCCTCAAGAACTCCGGGCCTGGATGAAGGACGA < 41bp 1 0.433714481597875 1 0.754643440246582 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67786067 chr11:67786061 nonsynonymous SNV 0.960 0 15 hm5C_associated_SNPs_9432 0 0 0 0 2 ALDH3B1 chr11:67785997 3'AG 67785997 Downstream 65bp
chr11 67786061 67786061 1 + G A rs529954694 67786067 + 67786047 67786087 41 CACCCTGGCCCTCAGGAACTCCGGGCCTGGATGAAGGACGA CACCCTGGCCCTCAAGAACTCCGGGCCTGGATGAAGGACGA < 41bp 1 0.433714481597875 1 0.754643440246582 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67786067 chr11:67786061 nonsynonymous SNV 0.960 0 15 hm5C_associated_SNPs_9432 0 0 0 0 2 ALDH3B1 chr11:67786106 5'GT 67786106 Upstream 46bp
chr11 67798125 67798125 1 + C T rs544094420 67798110 + 67798090 67798130 41 CAATACAGAAAAGGGGGAACCCGCTGGCCCAATGGCAGCGT CAATACAGAAAAGGGGGAACCCGCTGGCCCAATGGTAGCGT < 41bp 1 0.324927352498353 1 0.573661804199219 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout NDUFS8 ENSG00000110717 UTR5 Human protein_coding chr11:67798110 chr11:67798125 . . 0 36 hm5C_associated_SNPs_9433 2 0 1 0 1 NDUFS8 chr11:67798200 5'GT 67798200 Upstream 76bp
chr11 67815400 67815400 1 + C T rs34211419 67815417 + 67815397 67815437 41 CACCGGTGTCTTCCTGGGACCCTACCCCTTTGGCATCGATC CACTGGTGTCTTCCTGGGACCCTACCCCTTTGGCATCGATC < 41bp 1 0.00951800954762625 1 0.0506728291511536 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815417 chr11:67815400 synonymous SNV . 0 4 hm5C_associated_SNPs_9436 2 0 1 0 2 TCIRG1 chr11:67815349 3'AG 67815349 Downstream 52bp
chr11 67815400 67815400 1 + C T rs34211419 67815417 + 67815397 67815437 41 CACCGGTGTCTTCCTGGGACCCTACCCCTTTGGCATCGATC CACTGGTGTCTTCCTGGGACCCTACCCCTTTGGCATCGATC < 41bp 1 0.00951800954762625 1 0.0506728291511536 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815417 chr11:67815400 synonymous SNV . 0 4 hm5C_associated_SNPs_9436 2 0 1 0 2 TCIRG1 chr11:67815439 5'GT 67815439 Upstream 40bp
chr11 67818114 67818114 1 + C T rs141356870 67818104 + 67818084 67818124 41 GGTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGC GGTGATGGAGGGACTCTCAGCCTTCCTGCATGCCCTGCGGC < 41bp 1 0.0318991623165925 1 0.35627681016922 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818104 chr11:67818114 synonymous SNV . 0 31 hm5C_associated_SNPs_9437 1 0 1 0 2 TCIRG1 chr11:67818131 5'GT 67818131 Upstream 18bp
chr11 67818114 67818114 1 + C T rs141356870 67818104 + 67818084 67818124 41 GGTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGC GGTGATGGAGGGACTCTCAGCCTTCCTGCATGCCCTGCGGC < 41bp 1 0.0318991623165925 1 0.35627681016922 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818104 chr11:67818114 synonymous SNV . 0 31 hm5C_associated_SNPs_9437 1 0 1 0 2 TCIRG1 chr11:67818208 5'GT 67818208 Upstream 95bp
chr11 67818114 67818114 1 + C T rs141356870 67818105 + 67818085 67818125 41 GTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGCT GTGATGGAGGGACTCTCAGCCTTCCTGCATGCCCTGCGGCT < 41bp 1 0.124087311019479 1 0.452183187007904 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818105 chr11:67818114 synonymous SNV . 0 30 hm5C_associated_SNPs_9438 1 0 1 0 2 TCIRG1 chr11:67818131 5'GT 67818131 Upstream 18bp
chr11 67818114 67818114 1 + C T rs141356870 67818105 + 67818085 67818125 41 GTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGCT GTGATGGAGGGACTCTCAGCCTTCCTGCATGCCCTGCGGCT < 41bp 1 0.124087311019479 1 0.452183187007904 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818105 chr11:67818114 synonymous SNV . 0 30 hm5C_associated_SNPs_9438 1 0 1 0 2 TCIRG1 chr11:67818208 5'GT 67818208 Upstream 95bp
chr11 68177414 68177414 1 + G A rs140977837 68177413 + 68177393 68177433 41 CGCCTTCATGAACGGGAGCTCGGTGGAGCACGTGGTGGAGT CGCCTTCATGAACGGGAGCTCAGTGGAGCACGTGGTGGAGT < 41bp 1 0.409089661708737 1 0.374376326799393 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68177413 chr11:68177414 synonymous SNV . 0 22 hm5C_associated_SNPs_9439 1 0 0 0 1 LRP5 chr11:68177382 3'AG 68177382 Downstream 33bp
chr11 68177423 68177423 1 + C T rs33958013 68177413 + 68177393 68177433 41 CGCCTTCATGAACGGGAGCTCGGTGGAGCACGTGGTGGAGT CGCCTTCATGAACGGGAGCTCGGTGGAGCATGTGGTGGAGT < 41bp 1 0.395285393733856 1 0.427719473838806 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68177413 chr11:68177423 synonymous SNV . 0 31 hm5C_associated_SNPs_9440 0 0 1 0 1 LRP5 chr11:68177382 3'AG 68177382 Downstream 42bp
chr11 68177429 68177429 1 + G A rs34369535 68177413 + 68177393 68177433 41 CGCCTTCATGAACGGGAGCTCGGTGGAGCACGTGGTGGAGT CGCCTTCATGAACGGGAGCTCGGTGGAGCACGTGGTAGAGT < 41bp 1 0.421076590760062 1 0.531676650047302 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68177413 chr11:68177429 synonymous SNV . 0 37 hm5C_associated_SNPs_9441 1 0 1 0 1 LRP5 chr11:68177382 3'AG 68177382 Downstream 48bp
chr11 68204445 68204445 1 + C T rs3736229 68204450 + 68204430 68204470 41 CCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG CCCCGACTGTATCGATGGCTCCGACGAGCTCATGTGTGGTG < 41bp 1 0.151737237224567 1 0.105746060609818 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204450 chr11:68204445 synonymous SNV . 0 16 hm5C_associated_SNPs_9442 1 0 1 0 2 LRP5 chr11:68204357 3'AG 68204357 Downstream 89bp
chr11 68204445 68204445 1 + C T rs3736229 68204450 + 68204430 68204470 41 CCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG CCCCGACTGTATCGATGGCTCCGACGAGCTCATGTGTGGTG < 41bp 1 0.151737237224567 1 0.105746060609818 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204450 chr11:68204445 synonymous SNV . 0 16 hm5C_associated_SNPs_9442 1 0 1 0 2 LRP5 chr11:68204467 5'GT 68204467 Upstream 23bp
chr11 68204445 68204445 1 + C T rs3736229 68204451 + 68204431 68204471 41 CCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTGA CCCGACTGTATCGATGGCTCCGACGAGCTCATGTGTGGTGA < 41bp 1 0.407743044767799 1 0.465917944908142 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204451 chr11:68204445 synonymous SNV . 0 15 hm5C_associated_SNPs_9443 1 0 1 0 2 LRP5 chr11:68204357 3'AG 68204357 Downstream 89bp
chr11 68204445 68204445 1 + C T rs3736229 68204451 + 68204431 68204471 41 CCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTGA CCCGACTGTATCGATGGCTCCGACGAGCTCATGTGTGGTGA < 41bp 1 0.407743044767799 1 0.465917944908142 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204451 chr11:68204445 synonymous SNV . 0 15 hm5C_associated_SNPs_9443 1 0 1 0 2 LRP5 chr11:68204467 5'GT 68204467 Upstream 23bp
chr11 68213989 68213989 1 + C G rs1127291 68213986 + 68213966 68214006 41 CTCTTCAAACATTCCGGCCACTGCGAGACCGTACAGGTAGG CTCTTCAAACATTCCGGCCACTGGGAGACCGTACAGGTAGG < 41bp 1 0.514451617269969 1 0.60842752456665 experiment 0.971096765460061 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68213986 chr11:68213989 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_9444 0 0 1 0 2 LRP5 chr11:68213904 3'AG 68213904 Downstream 86bp
chr11 68213989 68213989 1 + C G rs1127291 68213986 + 68213966 68214006 41 CTCTTCAAACATTCCGGCCACTGCGAGACCGTACAGGTAGG CTCTTCAAACATTCCGGCCACTGGGAGACCGTACAGGTAGG < 41bp 1 0.514451617269969 1 0.60842752456665 experiment 0.971096765460061 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68213986 chr11:68213989 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_9444 0 0 1 0 2 LRP5 chr11:68214001 5'GT 68214001 Upstream 13bp
chr11 68671419 68671419 1 + C T rs4930624 68671416 + 68671396 68671436 41 CTAGGGGCCCAGGCCGGCGGCGGCGATGGCCTCGGCAGCTG CTAGGGGCCCAGGCCGGCGGCGGTGATGGCCTCGGCAGCTG < 41bp 1 0.695264675274597 1 0.769588828086853 experiment 0.609470649450806 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control IGHMBP2 ENSG00000132740 UTR5 Human protein_coding chr11:68671416 chr11:68671419 . . 0 24 hm5C_associated_SNPs_9445 2 0 1 0 1 IGHMBP2 chr11:68671506 5'GT 68671506 Upstream 88bp
chr11 68822721 68822721 1 + C T rs199768477 68822727 + 68822707 68822747 41 ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCCCTGGGA ACCAGCACGGCGGATGTGCGCTACCGCGCTGCTCCCTGGGA < 41bp 1 0.442540931353529 1 0.0579421818256378 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68822727 chr11:68822721 synonymous SNV . 0 15 hm5C_associated_SNPs_9447 0 0 0 0 2 TPCN2 chr11:68822643 3'AG 68822643 Downstream 79bp
chr11 68822721 68822721 1 + C T rs199768477 68822727 + 68822707 68822747 41 ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCCCTGGGA ACCAGCACGGCGGATGTGCGCTACCGCGCTGCTCCCTGGGA < 41bp 1 0.442540931353529 1 0.0579421818256378 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68822727 chr11:68822721 synonymous SNV . 0 15 hm5C_associated_SNPs_9447 0 0 0 0 2 TPCN2 chr11:68822820 5'GT 68822820 Upstream 100bp
chr11 68822739 68822739 1 + T A rs1470892 68822727 + 68822707 68822747 41 ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCCCTGGGA ACCAGCACGGCGGACGTGCGCTACCGCGCTGCACCCTGGGA < 41bp 1 0.412363311470606 1 0.0855731070041656 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68822727 chr11:68822739 synonymous SNV . 0 33 hm5C_associated_SNPs_9448 0 0 0 0 2 TPCN2 chr11:68822643 3'AG 68822643 Downstream 97bp
chr11 68822739 68822739 1 + T A rs1470892 68822727 + 68822707 68822747 41 ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCCCTGGGA ACCAGCACGGCGGACGTGCGCTACCGCGCTGCACCCTGGGA < 41bp 1 0.412363311470606 1 0.0855731070041656 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68822727 chr11:68822739 synonymous SNV . 0 33 hm5C_associated_SNPs_9448 0 0 0 0 2 TPCN2 chr11:68822820 5'GT 68822820 Upstream 82bp
chr11 70253475 70253475 1 + C T rs2298397 70253474 + 70253454 70253494 41 GGGGGCCGATGACTGGGAGACCGACCCTGATTTTGTGGTAG GGGGGCCGATGACTGGGAGACTGACCCTGATTTTGTGGTAG < 41bp 1 0.317682852082152 1 0.193307220935822 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70253474 chr11:70253475 synonymous SNV . 0 22 hm5C_associated_SNPs_9453 0 0 1 0 2 CTTN chr11:70253404 3'AG 70253404 Downstream 72bp
chr11 70253475 70253475 1 + C T rs2298397 70253474 + 70253454 70253494 41 GGGGGCCGATGACTGGGAGACCGACCCTGATTTTGTGGTAG GGGGGCCGATGACTGGGAGACTGACCCTGATTTTGTGGTAG < 41bp 1 0.317682852082152 1 0.193307220935822 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70253474 chr11:70253475 synonymous SNV . 0 22 hm5C_associated_SNPs_9453 0 0 1 0 2 CTTN chr11:70253490 5'GT 70253490 Upstream 16bp
chr11 70275242 70275242 1 + G A rs114157745 70275262 + 70275242 70275282 41 GGAGAGAGCCCAGCGGATGGCCAAGGAGCGGCAGGAGCAGG AGAGAGAGCCCAGCGGATGGCCAAGGAGCGGCAGGAGCAGG < 41bp 1 0.428617713078125 1 0.408005774021149 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70275262 chr11:70275242 synonymous SNV . 0 1 hm5C_associated_SNPs_9454 0 0 1 0 2 CTTN chr11:70275157 3'AG 70275157 Downstream 86bp
chr11 70275242 70275242 1 + G A rs114157745 70275262 + 70275242 70275282 41 GGAGAGAGCCCAGCGGATGGCCAAGGAGCGGCAGGAGCAGG AGAGAGAGCCCAGCGGATGGCCAAGGAGCGGCAGGAGCAGG < 41bp 1 0.428617713078125 1 0.408005774021149 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70275262 chr11:70275242 synonymous SNV . 0 1 hm5C_associated_SNPs_9454 0 0 1 0 2 CTTN chr11:70275305 5'GT 70275305 Upstream 64bp
chr11 71191891 71191891 1 + G A rs138969547 71191878 + 71191858 71191898 41 GAGGACTTGCTGGCACCCATCTCTGAGCCCATCGAGTGGAA GAGGACTTGCTGGCACCCATCTCTGAGCCCATCAAGTGGAA < 41bp 1 0.454098532960748 1 0.812594592571259 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71191878 chr11:71191891 nonsynonymous SNV 0.598 0 34 hm5C_associated_SNPs_9456 0 0 1 0 2 NADSYN1 chr11:71191801 3'AG 71191801 Downstream 91bp
chr11 71191891 71191891 1 + G A rs138969547 71191878 + 71191858 71191898 41 GAGGACTTGCTGGCACCCATCTCTGAGCCCATCGAGTGGAA GAGGACTTGCTGGCACCCATCTCTGAGCCCATCAAGTGGAA < 41bp 1 0.454098532960748 1 0.812594592571259 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71191878 chr11:71191891 nonsynonymous SNV 0.598 0 34 hm5C_associated_SNPs_9456 0 0 1 0 2 NADSYN1 chr11:71191925 5'GT 71191925 Upstream 35bp
chr11 71209499 71209499 1 + G A rs145428769 71209490 + 71209470 71209510 41 GCGTACCACGCCGAGAACTACAGCCCTGAGGACAACAGGTT GCGTACCACGCCGAGAACTACAGCCCTGAAGACAACAGGTT < 41bp 1 0.199538068748749 1 0.349709898233414 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71209490 chr11:71209499 synonymous SNV . 0 30 hm5C_associated_SNPs_9457 0 0 1 0 1 NADSYN1 chr11:71209574 5'GT 71209574 Upstream 76bp
chr11 71502813 71502813 1 + A C rs200557451 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCCCCCGCCGTCAGTCAAGTAT < 41bp 1 0.0770596046537494 1 0.354511380195618 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502813 nonsynonymous SNV 0.891 2 22 hm5C_associated_SNPs_9458 0 0 0 0 3 FAM86C1 chr11:71502782 3'AG 71502782 Downstream 32bp
chr11 71502813 71502813 1 + A C rs200557451 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCCCCCGCCGTCAGTCAAGTAT < 41bp 1 0.0770596046537494 1 0.354511380195618 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502813 nonsynonymous SNV 0.891 2 22 hm5C_associated_SNPs_9458 0 0 0 0 3 FAM86C1 chr11:71502785 3'AG 71502785 Downstream 29bp
chr11 71502813 71502813 1 + A C rs200557451 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCCCCCGCCGTCAGTCAAGTAT < 41bp 1 0.0770596046537494 1 0.354511380195618 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502813 nonsynonymous SNV 0.891 2 22 hm5C_associated_SNPs_9458 0 0 0 0 3 FAM86C1 chr11:71502865 5'GT 71502865 Upstream 53bp
chr11 71502828 71502828 1 + A G rs138407900 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAGGTAT < 41bp 1 0.221174313993642 1 0.536006152629852 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502828 nonsynonymous SNV 0.846 0 37 hm5C_associated_SNPs_9459 0 0 0 0 3 FAM86C1 chr11:71502782 3'AG 71502782 Downstream 47bp
chr11 71502828 71502828 1 + A G rs138407900 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAGGTAT < 41bp 1 0.221174313993642 1 0.536006152629852 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502828 nonsynonymous SNV 0.846 0 37 hm5C_associated_SNPs_9459 0 0 0 0 3 FAM86C1 chr11:71502785 3'AG 71502785 Downstream 44bp
chr11 71502828 71502828 1 + A G rs138407900 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAGGTAT < 41bp 1 0.221174313993642 1 0.536006152629852 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502828 nonsynonymous SNV 0.846 0 37 hm5C_associated_SNPs_9459 0 0 0 0 3 FAM86C1 chr11:71502865 5'GT 71502865 Upstream 38bp
chr11 71502832 71502832 1 + T A rs551563338 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAA < 41bp 1 0.219217462607657 1 0.533987700939178 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502832 stopgain 0.851 0 41 hm5C_associated_SNPs_9460 0 0 0 0 3 FAM86C1 chr11:71502782 3'AG 71502782 Downstream 51bp
chr11 71502832 71502832 1 + T A rs551563338 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAA < 41bp 1 0.219217462607657 1 0.533987700939178 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502832 stopgain 0.851 0 41 hm5C_associated_SNPs_9460 0 0 0 0 3 FAM86C1 chr11:71502785 3'AG 71502785 Downstream 48bp
chr11 71502832 71502832 1 + T A rs551563338 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAA < 41bp 1 0.219217462607657 1 0.533987700939178 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502832 stopgain 0.851 0 41 hm5C_associated_SNPs_9460 0 0 0 0 3 FAM86C1 chr11:71502865 5'GT 71502865 Upstream 34bp
chr11 71936141 71936141 1 + C T rs543631142 71936135 + 71936115 71936155 41 GGCCGCGGAGGAGCTGCTGGCCCGGGCGGGCCGCGATGGCA GGCCGCGGAGGAGCTGCTGGCCCGGGTGGGCCGCGATGGCA < 41bp 1 0.665304421390752 1 0.538396298885345 experiment 0.669391157218495 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71936135 chr11:71936141 nonsynonymous SNV 0.998 5 27 hm5C_associated_SNPs_9466 0 0 1 0 1 INPPL1 chr11:71936210 5'GT 71936210 Upstream 70bp
chr11 71941212 71941212 1 + A G rs2276048 71941211 + 71941191 71941231 41 CCTGACCAAGATTGGGAAGTCACAGAAGTTCACGCTGAGCG CCTGACCAAGATTGGGAAGTCGCAGAAGTTCACGCTGAGCG < 41bp 1 0.514435379675363 1 0.559022724628448 experiment 0.971129240649274 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71941211 chr11:71941212 synonymous SNV . 0 22 hm5C_associated_SNPs_9467 0 0 1 0 1 INPPL1 chr11:71941165 3'AG 71941165 Downstream 48bp
chr11 71945332 71945332 1 + A G rs61736312 71945331 + 71945311 71945351 41 CCCTTTCTCCTCAGGGCTCTCAAAGACTTCAGACCAGGCCT CCCTTTCTCCTCAGGGCTCTCGAAGACTTCAGACCAGGCCT < 41bp 1 0.389107934466627 1 0.860606670379639 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71945331 chr11:71945332 synonymous SNV . 0 22 hm5C_associated_SNPs_9468 0 0 1 0 1 INPPL1 chr11:71945325 3'AG 71945325 Downstream 8bp
chr11 71948802 71948802 1 + C A rs200602515 71948820 + 71948800 71948840 41 CCCGCATCCGGGAGAGCATCCAGGAAGACCTGGCAGAGGAG CCAGCATCCGGGAGAGCATCCAGGAAGACCTGGCAGAGGAG < 41bp 1 0.779085329742564 1 0.865331053733826 experiment 0.441829340514871 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71948820 chr11:71948802 nonsynonymous SNV 0.979 0 3 hm5C_associated_SNPs_9469 0 0 1 0 1 INPPL1 chr11:71948840 5'GT 71948840 Upstream 39bp
chr11 73073118 73073118 1 + C T rs369232606 73073111 + 73073091 73073131 41 TGTGCGGCTCCCACCCTGAACAGCTGCCCGGAGCCCTCGCC TGTGCGGCTCCCACCCTGAACAGCTGCTCGGAGCCCTCGCC < 41bp 1 0.402633333876264 1 0.297950208187103 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73073111 chr11:73073118 nonsynonymous SNV 0.388 1 28 hm5C_associated_SNPs_9481 0 0 1 0 1 ARHGEF17 chr11:73073085 3'AG 73073085 Downstream 34bp
chr11 73073715 73073715 1 + G A rs138108633 73073732 + 73073712 73073752 41 TTCGCCCAGCCCCTCGGGGACGCTGCAGAGCCAGGCCAGCC TTCACCCAGCCCCTCGGGGACGCTGCAGAGCCAGGCCAGCC < 41bp 1 0.163761712930329 1 0.260745584964752 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73073732 chr11:73073715 synonymous SNV . 0 4 hm5C_associated_SNPs_9482 0 0 0 0 1 ARHGEF17 chr11:73073779 5'GT 73073779 Upstream 65bp
chr11 73078684 73078684 1 + C G rs144429256 73078683 + 73078663 73078703 41 CTCCCCTTGGCACCGAGGCCCCGCCCCTGCCAGGCCTAAAA CTCCCCTTGGCACCGAGGCCCGGCCCCTGCCAGGCCTAAAA < 41bp 1 0.121763844553246 1 0.3888238966465 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73078683 chr11:73078684 synonymous SNV . 0 22 hm5C_associated_SNPs_9483 0 0 0 0 1 ARHGEF17 chr11:73078629 3'AG 73078629 Downstream 56bp
chr11 73078685 73078685 1 + G A rs143114785 73078683 + 73078663 73078703 41 CTCCCCTTGGCACCGAGGCCCCGCCCCTGCCAGGCCTAAAA CTCCCCTTGGCACCGAGGCCCCACCCCTGCCAGGCCTAAAA < 41bp 1 0.0217136609933436 1 0.0651423633098602 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73078683 chr11:73078685 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_9484 0 0 0 0 1 ARHGEF17 chr11:73078629 3'AG 73078629 Downstream 57bp
chr11 74329609 74329609 1 + C A rs148419916 74329602 + 74329582 74329622 41 ATTTAGTGCTATACAATGTGCAGCTGCCGTCCCTAGAGCTC ATTTAGTGCTATACAATGTGCAGCTGCAGTCCCTAGAGCTC < 41bp 1 0.393451305514039 1 0.227997422218323 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329602 chr11:74329609 synonymous SNV . 0 28 hm5C_associated_SNPs_9489 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 28bp
chr11 74329609 74329609 1 + C A rs148419916 74329605 + 74329585 74329625 41 TAGTGCTATACAATGTGCAGCTGCCGTCCCTAGAGCTCCTG TAGTGCTATACAATGTGCAGCTGCAGTCCCTAGAGCTCCTG < 41bp 1 0.597451604961904 1 0.241962045431137 experiment 0.805096790076192 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329605 chr11:74329609 synonymous SNV . 0 25 hm5C_associated_SNPs_9490 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 28bp
chr11 74329609 74329609 1 + C A rs148419916 74329608 + 74329588 74329628 41 TGCTATACAATGTGCAGCTGCCGTCCCTAGAGCTCCTGCTG TGCTATACAATGTGCAGCTGCAGTCCCTAGAGCTCCTGCTG < 41bp 1 0.145936051428532 1 0.220029950141907 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329608 chr11:74329609 synonymous SNV . 0 22 hm5C_associated_SNPs_9491 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 28bp
chr11 74329609 74329609 1 + C A rs148419916 74329623 + 74329603 74329643 41 AGCTGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTT AGCTGCAGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTT < 41bp 1 0.647734973930755 1 0.102852493524551 experiment 0.70453005213849 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329623 chr11:74329609 synonymous SNV . 0 7 hm5C_associated_SNPs_9492 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 28bp
chr11 74329609 74329609 1 + C A rs148419916 74329626 + 74329606 74329646 41 TGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCA TGCAGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCA < 41bp 1 0.683777694898591 1 0.261715471744537 experiment 0.632444610202819 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329626 chr11:74329609 synonymous SNV . 0 4 hm5C_associated_SNPs_9493 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 28bp
chr11 74329615 74329615 1 + T C rs4944052 74329602 + 74329582 74329622 41 ATTTAGTGCTATACAATGTGCAGCTGCCGTCCCTAGAGCTC ATTTAGTGCTATACAATGTGCAGCTGCCGTCCCCAGAGCTC < 41bp 1 0.412159670119588 1 0.186420470476151 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329602 chr11:74329615 synonymous SNV . 0 34 hm5C_associated_SNPs_9494 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 34bp
chr11 74329615 74329615 1 + T C rs4944052 74329605 + 74329585 74329625 41 TAGTGCTATACAATGTGCAGCTGCCGTCCCTAGAGCTCCTG TAGTGCTATACAATGTGCAGCTGCCGTCCCCAGAGCTCCTG < 41bp 1 0.238221917447334 1 0.0844994485378265 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329605 chr11:74329615 synonymous SNV . 0 31 hm5C_associated_SNPs_9495 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 34bp
chr11 74329615 74329615 1 + T C rs4944052 74329608 + 74329588 74329628 41 TGCTATACAATGTGCAGCTGCCGTCCCTAGAGCTCCTGCTG TGCTATACAATGTGCAGCTGCCGTCCCCAGAGCTCCTGCTG < 41bp 1 0.0562773338635109 1 0.0530762076377869 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329608 chr11:74329615 synonymous SNV . 0 28 hm5C_associated_SNPs_9496 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 34bp
chr11 74329615 74329615 1 + T C rs4944052 74329609 + 74329589 74329629 41 GCTATACAATGTGCAGCTGCCGTCCCTAGAGCTCCTGCTGA GCTATACAATGTGCAGCTGCCGTCCCCAGAGCTCCTGCTGA < 41bp 1 0.144968584225534 1 0.17559227347374 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329609 chr11:74329615 synonymous SNV . 0 27 hm5C_associated_SNPs_9497 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 34bp
chr11 74329615 74329615 1 + T C rs4944052 74329614 + 74329594 74329634 41 ACAATGTGCAGCTGCCGTCCCTAGAGCTCCTGCTGAATCCT ACAATGTGCAGCTGCCGTCCCCAGAGCTCCTGCTGAATCCT < 41bp 1 0.558904622309459 1 0.502743005752563 experiment 0.882190755381081 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329614 chr11:74329615 synonymous SNV . 0 22 hm5C_associated_SNPs_9498 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 34bp
chr11 74329615 74329615 1 + T C rs4944052 74329623 + 74329603 74329643 41 AGCTGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTT AGCTGCCGTCCCCAGAGCTCCTGCTGAATCCTCTTCGTCTT < 41bp 1 0.609958062706653 1 0.124752104282379 experiment 0.780083874586695 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329623 chr11:74329615 synonymous SNV . 0 13 hm5C_associated_SNPs_9499 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 34bp
chr11 74329615 74329615 1 + T C rs4944052 74329626 + 74329606 74329646 41 TGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCA TGCCGTCCCCAGAGCTCCTGCTGAATCCTCTTCGTCTTCCA < 41bp 1 0.690727217703576 1 0.203225016593933 experiment 0.618545564592848 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329626 chr11:74329615 synonymous SNV . 0 10 hm5C_associated_SNPs_9500 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 34bp
chr11 74329615 74329615 1 + T C rs4944052 74329633 + 74329613 74329653 41 CCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCAAAAAGTT CCCAGAGCTCCTGCTGAATCCTCTTCGTCTTCCAAAAAGTT < 41bp 1 0.116022947410793 1 0.0903134942054749 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329633 chr11:74329615 synonymous SNV . 0 3 hm5C_associated_SNPs_9501 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 34bp
chr11 74329638 74329638 1 + C G rs116112251 74329623 + 74329603 74329643 41 AGCTGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTT AGCTGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTGGTCTT < 41bp 1 0.562709783534711 1 0.0899827778339386 experiment 0.874580432930579 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329623 chr11:74329638 nonsynonymous SNV 0.993 3 36 hm5C_associated_SNPs_9502 0 0 0 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 57bp
chr11 74329638 74329638 1 + C G rs116112251 74329626 + 74329606 74329646 41 TGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCA TGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTGGTCTTCCA < 41bp 1 0.680377036125161 1 0.438082784414291 experiment 0.639245927749678 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329626 chr11:74329638 nonsynonymous SNV 0.993 3 33 hm5C_associated_SNPs_9503 0 0 0 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 57bp
chr11 74329638 74329638 1 + C G rs116112251 74329633 + 74329613 74329653 41 CCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCAAAAAGTT CCTAGAGCTCCTGCTGAATCCTCTTGGTCTTCCAAAAAGTT < 41bp 1 0.204177462715733 1 0.114114373922348 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329633 chr11:74329638 nonsynonymous SNV 0.993 3 26 hm5C_associated_SNPs_9504 0 0 0 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 57bp
chr11 74329638 74329638 1 + C G rs116112251 74329645 + 74329625 74329665 41 GCTGAATCCTCTTCGTCTTCCAAAAAGTTTGAGCAGTCACA GCTGAATCCTCTTGGTCTTCCAAAAAGTTTGAGCAGTCACA < 41bp 1 0.487195101352825 1 0.753594398498535 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329645 chr11:74329638 nonsynonymous SNV 0.993 3 14 hm5C_associated_SNPs_9505 0 0 0 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 57bp
chr11 75110563 75110563 1 + C G rs553767972 75110575 + 75110555 75110595 41 GCCACTTCCTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGG GCCACTTCGTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGG < 41bp 1 0.69318392182848 1 0.783592045307159 experiment 0.61363215634304 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110575 chr11:75110563 . . 0 9 hm5C_associated_SNPs_9512 0 0 1 0 1 RPS3 chr11:75110621 5'GT 75110621 Upstream 59bp
chr11 75110563 75110563 1 + C G rs553767972 75110580 + 75110560 75110600 41 TTCCTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTG TTCGTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTG < 41bp 1 0.62628708336333 1 0.39202418923378 experiment 0.74742583327334 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110580 chr11:75110563 . . 0 4 hm5C_associated_SNPs_9513 0 0 1 0 1 RPS3 chr11:75110621 5'GT 75110621 Upstream 59bp
chr11 75110563 75110563 1 + C G rs553767972 75110582 + 75110562 75110602 41 CCTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTGCA CGTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTGCA < 41bp 1 0.797242316465038 1 0.755182683467865 experiment 0.405515367069924 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110582 chr11:75110563 . . 0 2 hm5C_associated_SNPs_9514 0 0 1 0 1 RPS3 chr11:75110621 5'GT 75110621 Upstream 59bp
chr11 75110575 75110575 1 + C G rs17881757 75110580 + 75110560 75110600 41 TTCCTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTG TTCCTTTCCTTTCAGGGGAGCGCGGCGGCAAGATGGCAGTG < 41bp 1 0.648154898526769 1 0.534878313541412 experiment 0.703690202946462 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110580 chr11:75110575 . . 0 16 hm5C_associated_SNPs_9515 0 0 1 0 1 RPS3 chr11:75110621 5'GT 75110621 Upstream 47bp
chr11 75110575 75110575 1 + C G rs17881757 75110585 + 75110565 75110605 41 TTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTGCAAAT TTCCTTTCAGGGGAGCGCGGCGGCAAGATGGCAGTGCAAAT < 41bp 1 0.660587873266479 1 0.575757265090942 experiment 0.678824253467042 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110585 chr11:75110575 . . 0 11 hm5C_associated_SNPs_9516 0 0 1 0 1 RPS3 chr11:75110621 5'GT 75110621 Upstream 47bp
chr11 75110576 75110576 1 + G A rs17880657 75110575 + 75110555 75110595 41 GCCACTTCCTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGG GCCACTTCCTTTCCTTTCAGCAGAGCGCGGCGGCAAGATGG < 41bp 1 0.632238754506999 1 0.433421462774277 experiment 0.735522490986001 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110575 chr11:75110576 . . 0 22 hm5C_associated_SNPs_9517 0 0 1 0 1 RPS3 chr11:75110621 5'GT 75110621 Upstream 46bp
chr11 75110576 75110576 1 + G A rs17880657 75110580 + 75110560 75110600 41 TTCCTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTG TTCCTTTCCTTTCAGCAGAGCGCGGCGGCAAGATGGCAGTG < 41bp 1 0.636351046871539 1 0.37890613079071 experiment 0.727297906256923 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110580 chr11:75110576 . . 0 17 hm5C_associated_SNPs_9518 0 0 1 0 1 RPS3 chr11:75110621 5'GT 75110621 Upstream 46bp
chr11 75110576 75110576 1 + G A rs17880657 75110582 + 75110562 75110602 41 CCTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTGCA CCTTTCCTTTCAGCAGAGCGCGGCGGCAAGATGGCAGTGCA < 41bp 1 0.799971002694276 1 0.707671105861664 experiment 0.400057994611449 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110582 chr11:75110576 . . 0 15 hm5C_associated_SNPs_9519 0 0 1 0 1 RPS3 chr11:75110621 5'GT 75110621 Upstream 46bp
chr11 75110576 75110576 1 + G A rs17880657 75110585 + 75110565 75110605 41 TTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTGCAAAT TTCCTTTCAGCAGAGCGCGGCGGCAAGATGGCAGTGCAAAT < 41bp 1 0.619766306848322 1 0.471077382564545 experiment 0.760467386303355 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110585 chr11:75110576 . . 0 12 hm5C_associated_SNPs_9520 0 0 1 0 1 RPS3 chr11:75110621 5'GT 75110621 Upstream 46bp
chr11 75110581 75110581 1 + G C rs531798394 75110575 + 75110555 75110595 41 GCCACTTCCTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGG GCCACTTCCTTTCCTTTCAGCGGAGCCCGGCGGCAAGATGG < 41bp 1 0.655598525459994 1 0.786227226257324 experiment 0.688802949080012 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110575 chr11:75110581 . . 0 27 hm5C_associated_SNPs_9521 0 0 1 0 1 RPS3 chr11:75110621 5'GT 75110621 Upstream 41bp
chr11 75110581 75110581 1 + G C rs531798394 75110580 + 75110560 75110600 41 TTCCTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTG TTCCTTTCCTTTCAGCGGAGCCCGGCGGCAAGATGGCAGTG < 41bp 1 0.402692531378674 1 0.149252325296402 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110580 chr11:75110581 . . 0 22 hm5C_associated_SNPs_9522 0 0 1 0 1 RPS3 chr11:75110621 5'GT 75110621 Upstream 41bp
chr11 75110581 75110581 1 + G C rs531798394 75110585 + 75110565 75110605 41 TTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTGCAAAT TTCCTTTCAGCGGAGCCCGGCGGCAAGATGGCAGTGCAAAT < 41bp 1 0.653704286760129 1 0.511601984500885 experiment 0.692591426479741 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110585 chr11:75110581 . . 0 17 hm5C_associated_SNPs_9523 0 0 1 0 1 RPS3 chr11:75110621 5'GT 75110621 Upstream 41bp
chr11 75110589 75110589 1 + A C rs3133187 75110575 + 75110555 75110595 41 GCCACTTCCTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGG GCCACTTCCTTTCCTTTCAGCGGAGCGCGGCGGCCAGATGG < 41bp 1 0.706046470150321 1 0.793575763702393 experiment 0.587907059699358 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110575 chr11:75110589 . . 0 35 hm5C_associated_SNPs_9524 0 0 1 0 1 RPS3 chr11:75110621 5'GT 75110621 Upstream 33bp
chr11 75110589 75110589 1 + A C rs3133187 75110580 + 75110560 75110600 41 TTCCTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTG TTCCTTTCCTTTCAGCGGAGCGCGGCGGCCAGATGGCAGTG < 41bp 1 0.622164444431185 1 0.307306885719299 experiment 0.75567111113763 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110580 chr11:75110589 . . 0 30 hm5C_associated_SNPs_9525 0 0 1 0 1 RPS3 chr11:75110621 5'GT 75110621 Upstream 33bp
chr11 75110589 75110589 1 + A C rs3133187 75110585 + 75110565 75110605 41 TTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTGCAAAT TTCCTTTCAGCGGAGCGCGGCGGCCAGATGGCAGTGCAAAT < 41bp 1 0.416999747369978 1 0.38908064365387 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110585 chr11:75110589 . . 0 25 hm5C_associated_SNPs_9526 0 0 1 0 1 RPS3 chr11:75110621 5'GT 75110621 Upstream 33bp
chr11 75279846 75279846 1 + C T rs649257 75279855 + 75279835 75279875 41 CGGTCCTATACCGTGGGTGTCATGATGATGCACCGGACAGG CGGTCCTATACTGTGGGTGTCATGATGATGCACCGGACAGG < 41bp 1 0.528274833422174 1 0.152158051729202 experiment 0.943450333155652 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279855 chr11:75279846 synonymous SNV . 0 12 hm5C_associated_SNPs_9528 1 0 1 0 2 SERPINH1 chr11:75279776 3'AG 75279776 Downstream 71bp
chr11 75279846 75279846 1 + C T rs649257 75279855 + 75279835 75279875 41 CGGTCCTATACCGTGGGTGTCATGATGATGCACCGGACAGG CGGTCCTATACTGTGGGTGTCATGATGATGCACCGGACAGG < 41bp 1 0.528274833422174 1 0.152158051729202 experiment 0.943450333155652 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279855 chr11:75279846 synonymous SNV . 0 12 hm5C_associated_SNPs_9528 1 0 1 0 2 SERPINH1 chr11:75279874 5'GT 75279874 Upstream 29bp
chr11 75280006 75280006 1 + C T rs61733248 75279988 + 75279968 75280008 41 TCCGCTCCTCTCCCAGGCCTCTACAACTACTACGACGACGA TCCGCTCCTCTCCCAGGCCTCTACAACTACTACGACGATGA < 41bp 1 0.513441168520637 1 0.768744230270386 experiment 0.973117662958725 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279988 chr11:75280006 synonymous SNV . 0 39 hm5C_associated_SNPs_9529 2 0 1 0 1 SERPINH1 chr11:75279984 3'AG 75279984 Downstream 23bp
chr11 76114926 76114926 1 + C T rs80035019 76114912 + 76114892 76114932 41 GGGCAGGAGAAGATGGATGTCACAGCTCAAGAAGCGAGAAC GGGCAGGAGAAGATGGATGTCACAGCTCAAGAAGTGAGAAC < 41bp 1 0.524115512009219 1 0.33093449473381 experiment 0.951768975981561 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LOC100506127 ENSG00000179240 CDS Human protein_coding chr11:76114912 chr11:76114926 nonsynonymous SNV 0.005 0 35 hm5C_associated_SNPs_9533 0 0 0 0 1 LOC100506127 chr11:76114965 5'GT 76114965 Upstream 40bp
chr11 76572065 76572065 1 + C G rs138662843 76572057 + 76572037 76572077 41 ACCGAGAGGGCTACTGGGGCCCCACGACCTCCACGCTGGAC ACCGAGAGGGCTACTGGGGCCCCACGACGTCCACGCTGGAC < 41bp 1 0.300622497574711 1 0.159083187580109 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ACER3 ENSG00000078124 CDS Human protein_coding chr11:76572057 chr11:76572065 synonymous SNV . 0 29 hm5C_associated_SNPs_9538 0 0 1 0 2 ACER3 chr11:76572106 5'GT 76572106 Upstream 42bp
chr11 76572065 76572065 1 + C G rs138662843 76572057 + 76572037 76572077 41 ACCGAGAGGGCTACTGGGGCCCCACGACCTCCACGCTGGAC ACCGAGAGGGCTACTGGGGCCCCACGACGTCCACGCTGGAC < 41bp 1 0.300622497574711 1 0.159083187580109 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ACER3 ENSG00000078124 CDS Human protein_coding chr11:76572057 chr11:76572065 synonymous SNV . 0 29 hm5C_associated_SNPs_9538 0 0 1 0 2 ACER3 chr11:76572123 5'GT 76572123 Upstream 59bp
chr11 76572065 76572065 1 + C G rs138662843 76572058 + 76572038 76572078 41 CCGAGAGGGCTACTGGGGCCCCACGACCTCCACGCTGGACT CCGAGAGGGCTACTGGGGCCCCACGACGTCCACGCTGGACT < 41bp 1 0.404466287076375 1 0.116502076387405 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ACER3 ENSG00000078124 CDS Human protein_coding chr11:76572058 chr11:76572065 synonymous SNV . 0 28 hm5C_associated_SNPs_9539 0 0 1 0 2 ACER3 chr11:76572106 5'GT 76572106 Upstream 42bp
chr11 76572065 76572065 1 + C G rs138662843 76572058 + 76572038 76572078 41 CCGAGAGGGCTACTGGGGCCCCACGACCTCCACGCTGGACT CCGAGAGGGCTACTGGGGCCCCACGACGTCCACGCTGGACT < 41bp 1 0.404466287076375 1 0.116502076387405 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ACER3 ENSG00000078124 CDS Human protein_coding chr11:76572058 chr11:76572065 synonymous SNV . 0 28 hm5C_associated_SNPs_9539 0 0 1 0 2 ACER3 chr11:76572123 5'GT 76572123 Upstream 59bp
chr11 77300812 77300812 1 + C T rs545031882 77300825 + 77300805 77300845 41 CCCCGCGCCTCCCCGCCTCCCCGCCTCCCCGCCTCCTCGGC CCCCGCGTCTCCCCGCCTCCCCGCCTCCCCGCCTCCTCGGC < 41bp 1 0.494399594270909 1 0.129457205533981 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AQP11 ENSG00000178301 UTR5 Human protein_coding chr11:77300825 chr11:77300812 . . 0 8 hm5C_associated_SNPs_9540 0 0 0 0 1 AQP11 chr11:77300725 3'AG 77300725 Downstream 88bp
chr11 77300812 77300812 1 + C T rs545031882 77300826 + 77300806 77300846 41 CCCGCGCCTCCCCGCCTCCCCGCCTCCCCGCCTCCTCGGCT CCCGCGTCTCCCCGCCTCCCCGCCTCCCCGCCTCCTCGGCT < 41bp 1 0.646112629155874 1 0.211796224117279 experiment 0.707774741688251 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AQP11 ENSG00000178301 UTR5 Human protein_coding chr11:77300826 chr11:77300812 . . 0 7 hm5C_associated_SNPs_9541 0 0 0 0 1 AQP11 chr11:77300725 3'AG 77300725 Downstream 88bp
chr11 77300812 77300812 1 + C T rs545031882 77300828 + 77300808 77300848 41 CGCGCCTCCCCGCCTCCCCGCCTCCCCGCCTCCTCGGCTCT CGCGTCTCCCCGCCTCCCCGCCTCCCCGCCTCCTCGGCTCT < 41bp 1 0.0487173648407434 1 0.196919828653336 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AQP11 ENSG00000178301 UTR5 Human protein_coding chr11:77300828 chr11:77300812 . . 0 5 hm5C_associated_SNPs_9542 0 0 0 0 1 AQP11 chr11:77300725 3'AG 77300725 Downstream 88bp
chr11 77300812 77300812 1 + C T rs545031882 77300829 + 77300809 77300849 41 GCGCCTCCCCGCCTCCCCGCCTCCCCGCCTCCTCGGCTCTG GCGTCTCCCCGCCTCCCCGCCTCCCCGCCTCCTCGGCTCTG < 41bp 1 0.301051071922614 1 0.286146283149719 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AQP11 ENSG00000178301 UTR5 Human protein_coding chr11:77300829 chr11:77300812 . . 0 4 hm5C_associated_SNPs_9543 0 0 0 0 1 AQP11 chr11:77300725 3'AG 77300725 Downstream 88bp
chr11 77300812 77300812 1 + C T rs545031882 77300831 + 77300811 77300851 41 GCCTCCCCGCCTCCCCGCCTCCCCGCCTCCTCGGCTCTGGT GTCTCCCCGCCTCCCCGCCTCCCCGCCTCCTCGGCTCTGGT < 41bp 1 0.287706212764292 1 0.0975756347179413 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AQP11 ENSG00000178301 UTR5 Human protein_coding chr11:77300831 chr11:77300812 . . 0 2 hm5C_associated_SNPs_9544 0 0 0 0 1 AQP11 chr11:77300725 3'AG 77300725 Downstream 88bp
chr11 77300812 77300812 1 + C T rs545031882 77300832 + 77300812 77300852 41 CCTCCCCGCCTCCCCGCCTCCCCGCCTCCTCGGCTCTGGTT TCTCCCCGCCTCCCCGCCTCCCCGCCTCCTCGGCTCTGGTT < 41bp 1 0.438522303013279 1 0.180899083614349 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AQP11 ENSG00000178301 UTR5 Human protein_coding chr11:77300832 chr11:77300812 . . 0 1 hm5C_associated_SNPs_9545 0 0 0 0 1 AQP11 chr11:77300725 3'AG 77300725 Downstream 88bp
chr11 85339638 85339638 1 + C T rs577525231 85339644 + 85339624 85339664 41 CCACCGGCAAGTCACATGAGCCACCAAAATGGTGGTGTTCG CCACCGGCAAGTCATATGAGCCACCAAAATGGTGGTGTTCG < 41bp 1 0.136662230211626 1 0.0406516790390015 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMEM126B ENSG00000171204 UTR5 Human protein_coding chr11:85339644 chr11:85339638 . . 0 15 hm5C_associated_SNPs_9547 0 0 1 0 1 TMEM126B chr11:85339732 5'GT 85339732 Upstream 95bp
chr11 85339638 85339638 1 + C T rs577525231 85339645 + 85339625 85339665 41 CACCGGCAAGTCACATGAGCCACCAAAATGGTGGTGTTCGG CACCGGCAAGTCATATGAGCCACCAAAATGGTGGTGTTCGG < 41bp 1 0.762104311851186 1 0.189929097890854 experiment 0.475791376297628 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMEM126B ENSG00000171204 UTR5 Human protein_coding chr11:85339645 chr11:85339638 . . 0 14 hm5C_associated_SNPs_9548 0 0 1 0 1 TMEM126B chr11:85339732 5'GT 85339732 Upstream 95bp
chr11 93412665 93412665 1 + G C rs150862789 93412674 + 93412654 93412694 41 TGGAACGGTTTGAAAAGGCACATGTACGGGGATTCCAAGCA TGGAACGGTTTCAAAAGGCACATGTACGGGGATTCCAAGCA < 41bp 1 0.179139910175671 1 0.0899163484573364 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEP295 ENSG00000166004 CDS Human protein_coding chr11:93412674 chr11:93412665 nonsynonymous SNV 0.996 4 12 hm5C_associated_SNPs_9551 0 0 1 0 2 CEP295 chr11:93412578 3'AG 93412578 Downstream 88bp
chr11 93412665 93412665 1 + G C rs150862789 93412674 + 93412654 93412694 41 TGGAACGGTTTGAAAAGGCACATGTACGGGGATTCCAAGCA TGGAACGGTTTCAAAAGGCACATGTACGGGGATTCCAAGCA < 41bp 1 0.179139910175671 1 0.0899163484573364 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEP295 ENSG00000166004 CDS Human protein_coding chr11:93412674 chr11:93412665 nonsynonymous SNV 0.996 4 12 hm5C_associated_SNPs_9551 0 0 1 0 2 CEP295 chr11:93412718 5'GT 93412718 Upstream 54bp
chr11 93421014 93421014 1 + C T rs60226346 93421028 + 93421008 93421048 41 CGTTATCCTCTGGGCAGGAACAAGGTATTTCTCTCCAAGAG CGTTATTCTCTGGGCAGGAACAAGGTATTTCTCTCCAAGAG < 41bp 1 0.630204614628552 1 0.800123810768127 experiment 0.739590770742896 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP295 ENSG00000166004 CDS Human protein_coding chr11:93421028 chr11:93421014 nonsynonymous SNV 0.255 2 7 hm5C_associated_SNPs_9552 0 0 1 0 1 CEP295 chr11:93421031 5'GT 93421031 Upstream 18bp
chr11 94533475 94533475 1 + G A rs373004473 94533474 + 94533454 94533494 41 ACCCCCTGAGTATGGGGTAACGAGGTGATTATCAACTGCAG ACCCCCTGAGTATGGGGTAACAAGGTGATTATCAACTGCAG < 41bp 1 0.619314839050238 1 0.667797088623047 experiment 0.761370321899524 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94533474 chr11:94533475 synonymous SNV . 0 22 hm5C_associated_SNPs_9556 0 0 1 0 1 AMOTL1 chr11:94533477 5'GT 94533477 Upstream 3bp
chr11 95561121 95561121 1 + T A rs544014488 95561126 + 95561106 95561146 41 GTAACACCTCCCTCCTCCAACGGTATTAATGAGGAGTTGTC GTAACACCTCCCTCCACCAACGGTATTAATGAGGAGTTGTC < 41bp 1 0.644432195557484 1 0.15321871638298 experiment 0.711135608885032 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP57 ENSG00000166037 CDS Human protein_coding chr11:95561126 chr11:95561121 nonsynonymous SNV 0.092 1 16 hm5C_associated_SNPs_9560 0 0 1 0 1 CEP57 chr11:95561191 5'GT 95561191 Upstream 71bp
chr11 96123211 96123211 1 + G C rs185050228 96123222 + 96123202 96123242 41 AGTCAGGGAGCTGTGCGGGTCCTGGTTGCAAGAGAGGTGGG AGTCAGGGACCTGTGCGGGTCCTGGTTGCAAGAGAGGTGGG < 41bp 1 0.676508943394428 1 0.151291370391846 experiment 0.646982113211144 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control JRKL ENSG00000183340 UTR5 Human protein_coding chr11:96123222 chr11:96123211 . . 0 10 hm5C_associated_SNPs_9561 0 0 1 0 1 JRKL chr11:96123237 5'GT 96123237 Upstream 27bp
chr11 96123231 96123231 1 + A G rs56062767 96123222 + 96123202 96123242 41 AGTCAGGGAGCTGTGCGGGTCCTGGTTGCAAGAGAGGTGGG AGTCAGGGAGCTGTGCGGGTCCTGGTTGCGAGAGAGGTGGG < 41bp 1 0.712333647158512 1 0.175278604030609 experiment 0.575332705682976 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control JRKL ENSG00000183340 UTR5 Human protein_coding chr11:96123222 chr11:96123231 . . 0 30 hm5C_associated_SNPs_9562 0 0 1 0 1 JRKL chr11:96123237 5'GT 96123237 Upstream 7bp
chr11 107917087 107917087 1 + A G rs7117111 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGTTTATTAAGCAGGCACAGGCAGTAAGTTCTACATGC < 41bp 1 0.37547778058855 1 0.351598083972931 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917087 synonymous SNV . 0 17 hm5C_associated_SNPs_9563 0 0 1 1 2 CUL5 chr11:107916997 3'AG 107916997 Downstream 91bp
chr11 107917087 107917087 1 + A G rs7117111 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGTTTATTAAGCAGGCACAGGCAGTAAGTTCTACATGC < 41bp 1 0.37547778058855 1 0.351598083972931 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917087 synonymous SNV . 0 17 hm5C_associated_SNPs_9563 0 0 1 1 2 CUL5 chr11:107917096 5'GT 107917096 Upstream 10bp
chr11 107968470 107968470 1 + G T rs186168658 107968473 + 107968453 107968493 41 TTCTCAGTGAACCAGGAGTTCAGTTTAATGTAAGCTCGTTA TTCTCAGTGAACCAGGATTTCAGTTTAATGTAAGCTCGTTA < 41bp 1 0.346106285558335 1 0.179953306913376 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL5 ENSG00000166266 CDS Human protein_coding chr11:107968473 chr11:107968470 nonsynonymous SNV 1.000 0 18 hm5C_associated_SNPs_9564 0 0 1 0 1 CUL5 chr11:107968481 5'GT 107968481 Upstream 12bp
chr11 108196134 108196134 1 + A G rs545873723 108196145 + 108196125 108196165 41 GAGCCTATCATGGCTCTACGCACAGTCATTTTGGAGATCCT GAGCCTATCGTGGCTCTACGCACAGTCATTTTGGAGATCCT < 41bp 1 0.326226320134275 1 0.121269881725311 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108196145 chr11:108196134 nonsynonymous SNV 0.999 2 10 hm5C_associated_SNPs_9567 1 0 1 0 1 ATM chr11:108196037 3'AG 108196037 Downstream 98bp
chr11 113078035 113078035 1 + C T rs17115154 113078025 + 113078005 113078045 41 GCAGAATATTGTGAATGCCACCGCCAACCTCGGCCAGTCCG GCAGAATATTGTGAATGCCACCGCCAACCTTGGCCAGTCCG < 41bp 1 0.092468242135867 1 0.13249459862709 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113078025 chr11:113078035 synonymous SNV . 0 31 hm5C_associated_SNPs_9593 0 0 0 0 2 NCAM1 chr11:113077983 3'AG 113077983 Downstream 53bp
chr11 113078035 113078035 1 + C T rs17115154 113078025 + 113078005 113078045 41 GCAGAATATTGTGAATGCCACCGCCAACCTCGGCCAGTCCG GCAGAATATTGTGAATGCCACCGCCAACCTTGGCCAGTCCG < 41bp 1 0.092468242135867 1 0.13249459862709 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113078025 chr11:113078035 synonymous SNV . 0 31 hm5C_associated_SNPs_9593 0 0 0 0 2 NCAM1 chr11:113078100 5'GT 113078100 Upstream 66bp
chr11 117280358 117280358 1 + C T rs148424362 117280351 + 117280331 117280371 41 CAGTCGACTCAACCCCGAGTCTCACCTCCCGCAAGATCCAC CAGTCGACTCAACCCCGAGTCTCACCTTCCGCAAGATCCAC < 41bp 1 0.14416303480108 1 0.0297769904136658 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP164 ENSG00000110274 CDS Human protein_coding chr11:117280351 chr11:117280358 nonsynonymous SNV 0.001 0 28 hm5C_associated_SNPs_9596 0 0 0 0 1 CEP164 chr11:117280334 3'AG 117280334 Downstream 25bp
chr11 118267079 118267079 1 + G A rs141017463 118267077 + 118267057 118267097 41 CCCCTCACCATGGACCAGATCCGGCCAAACACAGAACTAAA CCCCTCACCATGGACCAGATCCAGCCAAACACAGAACTAAA < 41bp 1 0.158140810048659 1 0.242723673582077 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UBE4A ENSG00000110344 CDS Human protein_coding chr11:118267077 chr11:118267079 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_9597 0 0 1 0 1 UBE4A chr11:118267029 3'AG 118267029 Downstream 51bp
chr11 118277742 118277742 1 + G C rs181465227 118277750 + 118277730 118277770 41 CTGAGATCCCTAGAGCTATTCAGAGCCTGAAAAAAATAGTC CTGAGATCCCTACAGCTATTCAGAGCCTGAAAAAAATAGTC < 41bp 1 0.663109113953832 1 0.718759059906006 experiment 0.673781772092337 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ATP5L ENSG00000167283 CDS Human protein_coding chr11:118277750 chr11:118277742 nonsynonymous SNV 0.999 0 13 hm5C_associated_SNPs_9598 0 0 1 0 2 ATP5L chr11:118277652 3'AG 118277652 Downstream 91bp
chr11 118277742 118277742 1 + G C rs181465227 118277750 + 118277730 118277770 41 CTGAGATCCCTAGAGCTATTCAGAGCCTGAAAAAAATAGTC CTGAGATCCCTACAGCTATTCAGAGCCTGAAAAAAATAGTC < 41bp 1 0.663109113953832 1 0.718759059906006 experiment 0.673781772092337 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ATP5L ENSG00000167283 CDS Human protein_coding chr11:118277750 chr11:118277742 nonsynonymous SNV 0.999 0 13 hm5C_associated_SNPs_9598 0 0 1 0 2 ATP5L chr11:118277812 5'GT 118277812 Upstream 71bp
chr11 118277770 118277770 1 + C T rs148370674 118277750 + 118277730 118277770 41 CTGAGATCCCTAGAGCTATTCAGAGCCTGAAAAAAATAGTC CTGAGATCCCTAGAGCTATTCAGAGCCTGAAAAAAATAGTT < 41bp 1 0.664082744612089 1 0.824116468429565 experiment 0.671834510775823 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ATP5L ENSG00000167283 CDS Human protein_coding chr11:118277750 chr11:118277770 synonymous SNV . 0 41 hm5C_associated_SNPs_9599 0 0 1 0 1 ATP5L chr11:118277812 5'GT 118277812 Upstream 43bp
chr11 118355642 118355642 1 + A C rs9332801 118355660 + 118355640 118355680 41 ATAACACCCAGGGTGGTTTGCTTTCTCTGTGCCAGTAGTGG ATCACACCCAGGGTGGTTTGCTTTCTCTGTGCCAGTAGTGG < 41bp 1 0.015073362382366 1 0.0388703346252441 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118355660 chr11:118355642 synonymous SNV . 0 3 hm5C_associated_SNPs_9606 1 1 1 0 2 KMT2A chr11:118355577 3'AG 118355577 Downstream 66bp
chr11 118355642 118355642 1 + A C rs9332801 118355660 + 118355640 118355680 41 ATAACACCCAGGGTGGTTTGCTTTCTCTGTGCCAGTAGTGG ATCACACCCAGGGTGGTTTGCTTTCTCTGTGCCAGTAGTGG < 41bp 1 0.015073362382366 1 0.0388703346252441 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118355660 chr11:118355642 synonymous SNV . 0 3 hm5C_associated_SNPs_9606 1 1 1 0 2 KMT2A chr11:118355690 5'GT 118355690 Upstream 49bp
chr11 118367007 118367007 1 + G T rs565762131 118367013 + 118366993 118367033 41 GAAGACAGTCCAGAGCTGAACCCACCCCCAGGCATAGAAGA GAAGACAGTCCAGATCTGAACCCACCCCCAGGCATAGAAGA < 41bp 1 0.0241176481286186 1 0.0279262363910675 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118367013 chr11:118367007 nonsynonymous SNV 0.997 2 15 hm5C_associated_SNPs_9607 0 0 1 0 2 KMT2A chr11:118366976 3'AG 118366976 Downstream 32bp
chr11 118367007 118367007 1 + G T rs565762131 118367013 + 118366993 118367033 41 GAAGACAGTCCAGAGCTGAACCCACCCCCAGGCATAGAAGA GAAGACAGTCCAGATCTGAACCCACCCCCAGGCATAGAAGA < 41bp 1 0.0241176481286186 1 0.0279262363910675 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118367013 chr11:118367007 nonsynonymous SNV 0.997 2 15 hm5C_associated_SNPs_9607 0 0 1 0 2 KMT2A chr11:118367082 5'GT 118367082 Upstream 76bp
chr11 118405299 118405299 1 + G A rs143320045 118405286 + 118405266 118405306 41 AGCGTGAGCAGTGATGAGATCTGGCTCTGAGCCGAGGGCGA AGCGTGAGCAGTGATGAGATCTGGCTCTGAGCCAAGGGCGA < 41bp 1 0.531642542919326 1 0.345292121171951 experiment 0.936714914161348 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMEM25 ENSG00000149582 UTR3 Human protein_coding chr11:118405286 chr11:118405299 . . 0 34 hm5C_associated_SNPs_9610 0 0 0 0 1 TMEM25 chr11:118405222 3'AG 118405222 Downstream 78bp
chr11 118405299 118405299 1 + G A rs143320045 118405290 + 118405270 118405310 41 TGAGCAGTGATGAGATCTGGCTCTGAGCCGAGGGCGAGACA TGAGCAGTGATGAGATCTGGCTCTGAGCCAAGGGCGAGACA < 41bp 1 0.330149128365447 1 0.0281803905963898 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMEM25 ENSG00000149582 UTR3 Human protein_coding chr11:118405290 chr11:118405299 . . 0 30 hm5C_associated_SNPs_9611 0 0 0 0 1 TMEM25 chr11:118405222 3'AG 118405222 Downstream 78bp
chr11 118405299 118405299 1 + G A rs143320045 118405292 + 118405272 118405312 41 AGCAGTGATGAGATCTGGCTCTGAGCCGAGGGCGAGACAGG AGCAGTGATGAGATCTGGCTCTGAGCCAAGGGCGAGACAGG < 41bp 1 0.595161409737072 1 0.142927676439285 experiment 0.809677180525857 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMEM25 ENSG00000149582 UTR3 Human protein_coding chr11:118405292 chr11:118405299 . . 0 28 hm5C_associated_SNPs_9612 0 0 0 0 1 TMEM25 chr11:118405222 3'AG 118405222 Downstream 78bp
chr11 118405305 118405305 1 + G A rs45505501 118405286 + 118405266 118405306 41 AGCGTGAGCAGTGATGAGATCTGGCTCTGAGCCGAGGGCGA AGCGTGAGCAGTGATGAGATCTGGCTCTGAGCCGAGGGCAA < 41bp 1 0.579752481439226 1 0.306813895702362 experiment 0.840495037121548 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMEM25 ENSG00000149582 UTR3 Human protein_coding chr11:118405286 chr11:118405305 . . 0 40 hm5C_associated_SNPs_9613 0 0 0 0 1 TMEM25 chr11:118405222 3'AG 118405222 Downstream 84bp
chr11 118405305 118405305 1 + G A rs45505501 118405290 + 118405270 118405310 41 TGAGCAGTGATGAGATCTGGCTCTGAGCCGAGGGCGAGACA TGAGCAGTGATGAGATCTGGCTCTGAGCCGAGGGCAAGACA < 41bp 1 0.308090400994301 1 0.0711393654346466 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMEM25 ENSG00000149582 UTR3 Human protein_coding chr11:118405290 chr11:118405305 . . 0 36 hm5C_associated_SNPs_9614 0 0 0 0 1 TMEM25 chr11:118405222 3'AG 118405222 Downstream 84bp
chr11 118405305 118405305 1 + G A rs45505501 118405292 + 118405272 118405312 41 AGCAGTGATGAGATCTGGCTCTGAGCCGAGGGCGAGACAGG AGCAGTGATGAGATCTGGCTCTGAGCCGAGGGCAAGACAGG < 41bp 1 0.590734369620845 1 0.168308943510056 experiment 0.81853126075831 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMEM25 ENSG00000149582 UTR3 Human protein_coding chr11:118405292 chr11:118405305 . . 0 34 hm5C_associated_SNPs_9615 0 0 0 0 1 TMEM25 chr11:118405222 3'AG 118405222 Downstream 84bp
chr11 118478342 118478342 1 + A G rs137931146 118478354 + 118478334 118478374 41 TCCTCCTAAGCCTGAGGCCACCGCGACCGAGCCGAGCCAGG TCCTCCTAGGCCTGAGGCCACCGCGACCGAGCCGAGCCAGG < 41bp 1 0.224494276578058 1 0.360450088977814 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PHLDB1 ENSG00000019144 UTR5 Human protein_coding chr11:118478354 chr11:118478342 . . 0 9 hm5C_associated_SNPs_9618 0 0 0 0 1 PHLDB1 chr11:118478414 5'GT 118478414 Upstream 73bp
chr11 118952218 118952218 1 + G A rs149121697 118952207 + 118952187 118952227 41 AGCTTTTCTGTGATTGCTGACTACTTTGGCAGAGGTGTTTT AGCTTTTCTGTGATTGCTGACTACTTTGGCAAAGGTGTTTT < 41bp 1 0.244877679318185 1 0.274476051330566 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VPS11 ENSG00000160695 CDS Human protein_coding chr11:118952207 chr11:118952218 nonsynonymous SNV 1.000 0 32 hm5C_associated_SNPs_9619 0 0 0 0 1 VPS11 chr11:118952169 3'AG 118952169 Downstream 50bp
chr11 118955679 118955679 1 + C T rs589925 118955678 + 118955658 118955698 41 CGGTACTCGCCGGCCGGAGCCCCCGGCTTCCCGGGGCCGGG CGGTACTCGCCGGCCGGAGCCTCCGGCTTCCCGGGGCCGGG < 41bp 1 0.685972681193949 1 0.518853843212128 experiment 0.628054637612101 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMBS ENSG00000256269 UTR5 Human protein_coding chr11:118955678 chr11:118955679 . . 0 22 hm5C_associated_SNPs_9620 1 0 1 0 1 HMBS chr11:118955776 5'GT 118955776 Upstream 98bp
chr11 118955679 118955679 1 + C T rs589925 118955681 + 118955661 118955701 41 TACTCGCCGGCCGGAGCCCCCGGCTTCCCGGGGCCGGGGGA TACTCGCCGGCCGGAGCCTCCGGCTTCCCGGGGCCGGGGGA < 41bp 1 0.64530422467517 1 0.770762085914612 experiment 0.709391550649661 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMBS ENSG00000256269 UTR5 Human protein_coding chr11:118955681 chr11:118955679 . . 0 19 hm5C_associated_SNPs_9621 1 0 1 0 1 HMBS chr11:118955776 5'GT 118955776 Upstream 98bp
chr11 118955679 118955679 1 + C T rs589925 118955694 + 118955674 118955714 41 GAGCCCCCGGCTTCCCGGGGCCGGGGGACCTTAGCGGCACC GAGCCTCCGGCTTCCCGGGGCCGGGGGACCTTAGCGGCACC < 41bp 1 0.642054535364829 1 0.796288728713989 experiment 0.715890929270342 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMBS ENSG00000256269 UTR5 Human protein_coding chr11:118955694 chr11:118955679 . . 0 6 hm5C_associated_SNPs_9622 1 0 1 0 1 HMBS chr11:118955776 5'GT 118955776 Upstream 98bp
chr11 119045951 119045951 1 + C A rs145779362 119045961 + 119045941 119045981 41 GCTGCCTCTGCGGGCTCTGCCTCTGCTCTTCAACCTGATCA GCTGCCTCTGAGGGCTCTGCCTCTGCTCTTCAACCTGATCA < 41bp 1 0.33288821882035 1 0.281736850738525 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119045961 chr11:119045951 synonymous SNV . 0 11 hm5C_associated_SNPs_9627 0 0 0 0 1 NLRX1 chr11:119045983 5'GT 119045983 Upstream 33bp
chr11 119045952 119045952 1 + G A rs372662621 119045961 + 119045941 119045981 41 GCTGCCTCTGCGGGCTCTGCCTCTGCTCTTCAACCTGATCA GCTGCCTCTGCAGGCTCTGCCTCTGCTCTTCAACCTGATCA < 41bp 1 0.283319875877405 1 0.37960809469223 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119045961 chr11:119045952 nonsynonymous SNV 0.963 3 12 hm5C_associated_SNPs_9628 0 0 0 0 1 NLRX1 chr11:119045983 5'GT 119045983 Upstream 32bp
chr11 120099658 120099658 1 + A C rs2508489 120099678 + 120099658 120099698 41 ACGGGAAGCCCTGCGTCTGCCGCTATGGCCTGAGCCTGGCC CCGGGAAGCCCTGCGTCTGCCGCTATGGCCTGAGCCTGGCC < 41bp 1 0.679650212564023 1 0.756683111190796 experiment 0.640699574871954 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OAF ENSG00000184232 CDS Human protein_coding chr11:120099678 chr11:120099658 nonsynonymous SNV 0.000 0 1 hm5C_associated_SNPs_9631 0 0 0 0 1 OAF chr11:120099577 3'AG 120099577 Downstream 82bp
chr11 120099671 120099671 1 + C A rs149920245 120099678 + 120099658 120099698 41 ACGGGAAGCCCTGCGTCTGCCGCTATGGCCTGAGCCTGGCC ACGGGAAGCCCTGAGTCTGCCGCTATGGCCTGAGCCTGGCC < 41bp 1 0.678271764026733 1 0.795372366905212 experiment 0.643456471946535 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OAF ENSG00000184232 CDS Human protein_coding chr11:120099678 chr11:120099671 stopgain 0.003 1 14 hm5C_associated_SNPs_9632 0 0 0 0 1 OAF chr11:120099577 3'AG 120099577 Downstream 95bp
chr11 120099671 120099671 1 + C A rs149920245 120099680 + 120099660 120099700 41 GGGAAGCCCTGCGTCTGCCGCTATGGCCTGAGCCTGGCCTG GGGAAGCCCTGAGTCTGCCGCTATGGCCTGAGCCTGGCCTG < 41bp 1 0.507642575337611 1 0.488498747348785 experiment 0.984714849324777 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OAF ENSG00000184232 CDS Human protein_coding chr11:120099680 chr11:120099671 stopgain 0.003 1 12 hm5C_associated_SNPs_9633 0 0 0 0 1 OAF chr11:120099577 3'AG 120099577 Downstream 95bp
chr11 120280115 120280115 1 + A G rs190640580 120280127 + 120280107 120280147 41 CTCCTCCAAGAAGACAAAGTCTAGTTCAGAGGAGAGTAGAT CTCCTCCAGGAAGACAAAGTCTAGTTCAGAGGAGAGTAGAT < 41bp 1 0.232227013579753 1 0.424672454595566 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120280127 chr11:120280115 nonsynonymous SNV 1.000 0 9 hm5C_associated_SNPs_9636 0 0 1 0 2 ARHGEF12 chr11:120280103 3'AG 120280103 Downstream 13bp
chr11 120280115 120280115 1 + A G rs190640580 120280127 + 120280107 120280147 41 CTCCTCCAAGAAGACAAAGTCTAGTTCAGAGGAGAGTAGAT CTCCTCCAGGAAGACAAAGTCTAGTTCAGAGGAGAGTAGAT < 41bp 1 0.232227013579753 1 0.424672454595566 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120280127 chr11:120280115 nonsynonymous SNV 1.000 0 9 hm5C_associated_SNPs_9636 0 0 1 0 2 ARHGEF12 chr11:120280159 5'GT 120280159 Upstream 45bp
chr11 123396844 123396844 1 + C T rs17740690 123396827 + 123396807 123396847 41 TGTAACGGGGATGCTAAGGACACGGTCAGTGGATTATCGTG TGTAACGGGGATGCTAAGGACACGGTCAGTGGATTATTGTG < 41bp 1 0.605274427488263 1 0.456524670124054 experiment 0.789451145023474 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GRAMD1B ENSG00000023171 UTR5 Human protein_coding chr11:123396827 chr11:123396844 . . 0 38 hm5C_associated_SNPs_9644 0 0 0 0 1 GRAMD1B chr11:123396879 5'GT 123396879 Upstream 36bp
chr11 124500662 124500662 1 + G C rs147564095 124500660 + 124500640 124500680 41 GGGGGAAACTAATGCCTAACCTGCTTCCAGCTGGAGCTGAC GGGGGAAACTAATGCCTAACCTCCTTCCAGCTGGAGCTGAC < 41bp 1 0.661716834036285 1 0.364935547113419 experiment 0.67656633192743 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124500660 chr11:124500662 synonymous SNV . 0 23 hm5C_associated_SNPs_9647 0 0 1 0 2 TBRG1 chr11:124500641 3'AG 124500641 Downstream 22bp
chr11 124500662 124500662 1 + G C rs147564095 124500660 + 124500640 124500680 41 GGGGGAAACTAATGCCTAACCTGCTTCCAGCTGGAGCTGAC GGGGGAAACTAATGCCTAACCTCCTTCCAGCTGGAGCTGAC < 41bp 1 0.661716834036285 1 0.364935547113419 experiment 0.67656633192743 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124500660 chr11:124500662 synonymous SNV . 0 23 hm5C_associated_SNPs_9647 0 0 1 0 2 TBRG1 chr11:124500751 5'GT 124500751 Upstream 90bp
chr11 125439384 125439384 1 + A G rs551704338 125439389 + 125439369 125439409 41 GCCCAGTGCGGGCGCAGCGGCCCCGGCCCTGGAAGCGCCCC GCCCAGTGCGGGCGCGGCGGCCCCGGCCCTGGAAGCGCCCC < 41bp 1 0.711334077305005 1 0.391529113054276 experiment 0.577331845389991 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EI24 ENSG00000149547 UTR5 Human protein_coding chr11:125439389 chr11:125439384 . . 0 16 hm5C_associated_SNPs_9650 0 0 1 0 1 EI24 chr11:125439469 5'GT 125439469 Upstream 86bp
chr11 125439384 125439384 1 + A G rs551704338 125439395 + 125439375 125439415 41 TGCGGGCGCAGCGGCCCCGGCCCTGGAAGCGCCCCGGCGGA TGCGGGCGCGGCGGCCCCGGCCCTGGAAGCGCCCCGGCGGA < 41bp 1 0.657146083056512 1 0.670785784721375 experiment 0.685707833886975 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EI24 ENSG00000149547 UTR5 Human protein_coding chr11:125439395 chr11:125439384 . . 0 10 hm5C_associated_SNPs_9651 0 0 1 0 1 EI24 chr11:125439469 5'GT 125439469 Upstream 86bp
chr11 125439384 125439384 1 + A G rs551704338 125439396 + 125439376 125439416 41 GCGGGCGCAGCGGCCCCGGCCCTGGAAGCGCCCCGGCGGAG GCGGGCGCGGCGGCCCCGGCCCTGGAAGCGCCCCGGCGGAG < 41bp 1 0.764164852419413 1 0.514892220497131 experiment 0.471670295161174 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EI24 ENSG00000149547 UTR5 Human protein_coding chr11:125439396 chr11:125439384 . . 0 9 hm5C_associated_SNPs_9652 0 0 1 0 1 EI24 chr11:125439469 5'GT 125439469 Upstream 86bp
chr11 125482982 125482982 1 + T C rs34079079 125482974 + 125482954 125482994 41 CCAGTGAGGCCTACTCTTCTCCGTCCATTGTACTATCTGCC CCAGTGAGGCCTACTCTTCTCCGTCCATCGTACTATCTGCC < 41bp 1 0.0933496287426817 1 0.243051528930664 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STT3A ENSG00000134910 CDS Human protein_coding chr11:125482974 chr11:125482982 synonymous SNV . 0 29 hm5C_associated_SNPs_9654 1 0 1 0 2 STT3A chr11:125482884 3'AG 125482884 Downstream 99bp
chr11 125482982 125482982 1 + T C rs34079079 125482974 + 125482954 125482994 41 CCAGTGAGGCCTACTCTTCTCCGTCCATTGTACTATCTGCC CCAGTGAGGCCTACTCTTCTCCGTCCATCGTACTATCTGCC < 41bp 1 0.0933496287426817 1 0.243051528930664 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STT3A ENSG00000134910 CDS Human protein_coding chr11:125482974 chr11:125482982 synonymous SNV . 0 29 hm5C_associated_SNPs_9654 1 0 1 0 2 STT3A chr11:125483072 5'GT 125483072 Upstream 91bp
chr11 126081700 126081700 1 + G A rs369602343 126081703 + 126081683 126081723 41 GCCGGTAGCTGCAGCTGGAGCAGTGGCGTTTGGAGGAGACT GCCGGTAGCTGCAGCTGAAGCAGTGGCGTTTGGAGGAGACT < 41bp 1 0.782302684850197 1 0.539082050323486 experiment 0.435394630299606 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAM118B ENSG00000197798 UTR5 Human protein_coding chr11:126081703 chr11:126081700 . . 0 18 hm5C_associated_SNPs_9655 0 0 1 0 1 FAM118B chr11:126081725 5'GT 126081725 Upstream 26bp
chr11 126143246 126143246 1 + G A rs34542988 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAATCGATGCTCCTCCCCTGGACCTCCGGTTCA < 41bp 1 0.491133041479878 1 0.115163952112198 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143246 nonsynonymous SNV 0.001 1 11 hm5C_associated_SNPs_9656 2 0 1 0 2 FOXRED1 chr11:126143211 3'AG 126143211 Downstream 36bp
chr11 126143246 126143246 1 + G A rs34542988 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAATCGATGCTCCTCCCCTGGACCTCCGGTTCA < 41bp 1 0.491133041479878 1 0.115163952112198 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143246 nonsynonymous SNV 0.001 1 11 hm5C_associated_SNPs_9656 2 0 1 0 2 FOXRED1 chr11:126143231 3'AG 126143231 Downstream 16bp
chr11 126213242 126213242 1 + G A rs35836343 126213246 + 126213226 126213266 41 ATCTGCCATCGCCGGGGCATCAGATCCCTACGCGACCTTAC ATCTGCCATCGCCGGGACATCAGATCCCTACGCGACCTTAC < 41bp 1 0.495544040984812 1 0.659728467464447 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DCPS ENSG00000110063 CDS Human protein_coding chr11:126213246 chr11:126213242 nonsynonymous SNV 0.956 1 17 hm5C_associated_SNPs_9657 1 0 0 0 2 DCPS chr11:126213202 3'AG 126213202 Downstream 41bp
chr11 126213242 126213242 1 + G A rs35836343 126213246 + 126213226 126213266 41 ATCTGCCATCGCCGGGGCATCAGATCCCTACGCGACCTTAC ATCTGCCATCGCCGGGACATCAGATCCCTACGCGACCTTAC < 41bp 1 0.495544040984812 1 0.659728467464447 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DCPS ENSG00000110063 CDS Human protein_coding chr11:126213246 chr11:126213242 nonsynonymous SNV 0.956 1 17 hm5C_associated_SNPs_9657 1 0 0 0 2 DCPS chr11:126213312 5'GT 126213312 Upstream 71bp
chr11 126215298 126215298 1 + C T rs142492066 126215278 + 126215258 126215298 41 GCTACCGGATGAAGGGAGACCATCTGCGAGTATACCTGCAC GCTACCGGATGAAGGGAGACCATCTGCGAGTATACCTGCAT < 41bp 1 0.239699546534921 1 0.234757512807846 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DCPS ENSG00000110063 CDS Human protein_coding chr11:126215278 chr11:126215298 synonymous SNV . 0 41 hm5C_associated_SNPs_9658 0 0 1 0 1 DCPS chr11:126215242 3'AG 126215242 Downstream 57bp
chr11 129991553 129991553 1 + G A rs537248071 129991572 + 129991552 129991592 41 TGCTCCCATGTGGGGTAGACCAGTTCCATGGCACTGAATAT TACTCCCATGTGGGGTAGACCAGTTCCATGGCACTGAATAT < 41bp 1 0.141426880361133 1 0.222380101680756 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:129991572 chr11:129991553 synonymous SNV . 0 2 hm5C_associated_SNPs_9659 0 0 1 0 1 APLP2 chr11:129991509 3'AG 129991509 Downstream 45bp
chr11 129991606 129991606 1 + A G rs11822318 129991624 + 129991604 129991644 41 TCAGACAAAGATTATTGGATCTGTGTCAAAAGAAGAGGAAG TCGGACAAAGATTATTGGATCTGTGTCAAAAGAAGAGGAAG < 41bp 1 0.276257869517728 1 0.103152245283127 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout APLP2;APLP2 ENSG00000084234 CDS Human protein_coding chr11:129991624 chr11:129991606 nonsynonymous SNV 0.914 1 3 hm5C_associated_SNPs_9660 0 0 1 0 2 APLP2 chr11:129991509 3'AG 129991509 Downstream 98bp
chr11 129991606 129991606 1 + A G rs11822318 129991624 + 129991604 129991644 41 TCAGACAAAGATTATTGGATCTGTGTCAAAAGAAGAGGAAG TCGGACAAAGATTATTGGATCTGTGTCAAAAGAAGAGGAAG < 41bp 1 0.276257869517728 1 0.103152245283127 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout APLP2;APLP2 ENSG00000084234 CDS Human protein_coding chr11:129991624 chr11:129991606 nonsynonymous SNV 0.914 1 3 hm5C_associated_SNPs_9660 0 0 1 0 2 APLP2 chr11:129991705 5'GT 129991705 Upstream 100bp
chr11 129991618 129991618 1 + T C rs370107772 129991624 + 129991604 129991644 41 TCAGACAAAGATTATTGGATCTGTGTCAAAAGAAGAGGAAG TCAGACAAAGATTACTGGATCTGTGTCAAAAGAAGAGGAAG < 41bp 1 0.282316871884627 1 0.156728088855743 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout APLP2 ENSG00000084234 CDS Human protein_coding chr11:129991624 chr11:129991618 nonsynonymous SNV 0.044 1 15 hm5C_associated_SNPs_9661 0 0 1 0 1 APLP2 chr11:129991705 5'GT 129991705 Upstream 88bp
chr11 129991618 129991618 1 + T C rs370107772 129991630 + 129991610 129991650 41 AAAGATTATTGGATCTGTGTCAAAAGAAGAGGAAGAGGAAG AAAGATTACTGGATCTGTGTCAAAAGAAGAGGAAGAGGAAG < 41bp 1 0.475558560435481 1 0.724222302436829 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout APLP2 ENSG00000084234 CDS Human protein_coding chr11:129991630 chr11:129991618 nonsynonymous SNV 0.044 1 9 hm5C_associated_SNPs_9662 0 0 1 0 1 APLP2 chr11:129991705 5'GT 129991705 Upstream 88bp
chr11 129991646 129991646 1 + G T rs199857117 129991630 + 129991610 129991650 41 AAAGATTATTGGATCTGTGTCAAAAGAAGAGGAAGAGGAAG AAAGATTATTGGATCTGTGTCAAAAGAAGAGGAAGATGAAG < 41bp 1 0.447547392924097 1 0.620107412338257 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout APLP2 ENSG00000084234 CDS Human protein_coding chr11:129991630 chr11:129991646 nonsynonymous SNV 0.130 1 37 hm5C_associated_SNPs_9663 0 0 1 0 1 APLP2 chr11:129991705 5'GT 129991705 Upstream 60bp
chr11 130005552 130005552 1 + T C rs138762568 130005561 + 130005541 130005581 41 TCTGAGGAGAGTGAGGAGATCCCACCGTTCCACCCCTTCCA TCTGAGGAGAGCGAGGAGATCCCACCGTTCCACCCCTTCCA < 41bp 1 0.320038647091851 1 0.147471010684967 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130005561 chr11:130005552 synonymous SNV . 0 12 hm5C_associated_SNPs_9664 0 0 1 0 2 APLP2 chr11:130005458 3'AG 130005458 Downstream 95bp
chr11 130005552 130005552 1 + T C rs138762568 130005561 + 130005541 130005581 41 TCTGAGGAGAGTGAGGAGATCCCACCGTTCCACCCCTTCCA TCTGAGGAGAGCGAGGAGATCCCACCGTTCCACCCCTTCCA < 41bp 1 0.320038647091851 1 0.147471010684967 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130005561 chr11:130005552 synonymous SNV . 0 12 hm5C_associated_SNPs_9664 0 0 1 0 2 APLP2 chr11:130005610 5'GT 130005610 Upstream 59bp
chr11 134244123 134244123 1 + C A rs3741097 134244119 + 134244099 134244139 41 GGGTAGCTTGTCCATCAGCTCCACCCCTTGTGACACCTTTC GGGTAGCTTGTCCATCAGCTCCACACCTTGTGACACCTTTC < 41bp 1 0.204685930105134 1 0.0383476614952087 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134244119 chr11:134244123 synonymous SNV . 0 25 hm5C_associated_SNPs_9666 0 0 1 0 2 GLB1L2 chr11:134244039 3'AG 134244039 Downstream 85bp
chr11 134244123 134244123 1 + C A rs3741097 134244119 + 134244099 134244139 41 GGGTAGCTTGTCCATCAGCTCCACCCCTTGTGACACCTTTC GGGTAGCTTGTCCATCAGCTCCACACCTTGTGACACCTTTC < 41bp 1 0.204685930105134 1 0.0383476614952087 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134244119 chr11:134244123 synonymous SNV . 0 25 hm5C_associated_SNPs_9666 0 0 1 0 2 GLB1L2 chr11:134244150 5'GT 134244150 Upstream 28bp
chr12 987482 987482 1 + G A rs1012729 987472 + 987452 987492 41 TGAGGCCACTACTGCACAGCCAGTGAGTCAGCCTCAAGCTC TGAGGCCACTACTGCACAGCCAGTGAGTCAACCTCAAGCTC < 41bp 1 0.317875309723207 1 0.0552375316619873 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WNK1 ENSG00000060237 CDS Human protein_coding chr12:987472 chr12:987482 synonymous SNV . 0 31 hm5C_associated_SNPs_9668 3 0 1 0 1 WNK1 chr12:987527 5'GT 987527 Upstream 46bp
chr12 987482 987482 1 + G A rs1012729 987483 + 987463 987503 41 CTGCACAGCCAGTGAGTCAGCCTCAAGCTCCACAAGTCTTG CTGCACAGCCAGTGAGTCAACCTCAAGCTCCACAAGTCTTG < 41bp 1 0.176001497777923 1 0.0226494967937469 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WNK1 ENSG00000060237 CDS Human protein_coding chr12:987483 chr12:987482 synonymous SNV . 0 20 hm5C_associated_SNPs_9669 3 0 1 0 1 WNK1 chr12:987527 5'GT 987527 Upstream 46bp
chr12 1890199 1890199 1 + G A rs16928751 1890217 + 1890197 1890237 41 CAGTGGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAG CAATGGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAG < 41bp 1 0.0485552756075317 1 0.0339580774307251 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1890217 chr12:1890199 synonymous SNV . 0 3 hm5C_associated_SNPs_9671 0 0 1 0 1 ADIPOR2 chr12:1890242 5'GT 1890242 Upstream 44bp
chr12 1890199 1890199 1 + G A rs16928751 1890218 + 1890198 1890238 41 AGTGGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAGA AATGGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAGA < 41bp 1 0.271080237329274 1 0.0685460865497589 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1890218 chr12:1890199 synonymous SNV . 0 2 hm5C_associated_SNPs_9672 0 0 1 0 1 ADIPOR2 chr12:1890242 5'GT 1890242 Upstream 44bp
chr12 1890199 1890199 1 + G A rs16928751 1890219 + 1890199 1890239 41 GTGGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAGAG ATGGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAGAG < 41bp 1 0.520369245485278 1 0.521678805351257 experiment 0.959261509029445 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1890219 chr12:1890199 synonymous SNV . 0 1 hm5C_associated_SNPs_9673 0 0 1 0 1 ADIPOR2 chr12:1890242 5'GT 1890242 Upstream 44bp
chr12 3389559 3389559 1 + C A rs877089 3389553 + 3389533 3389573 41 CCCTCCGCCTGGCAGGTGAACGAGAACGCCAAGAAGGACCT CCCTCCGCCTGGCAGGTGAACGAGAAAGCCAAGAAGGACCT < 41bp 1 0.769322853116451 1 0.567544102668762 experiment 0.461354293767098 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSPAN9 ENSG00000011105 CDS Human protein_coding chr12:3389553 chr12:3389559 nonsynonymous SNV 0.972 1 27 hm5C_associated_SNPs_9676 0 0 1 0 2 TSPAN9 chr12:3389548 3'AG 3389548 Downstream 12bp
chr12 3389559 3389559 1 + C A rs877089 3389553 + 3389533 3389573 41 CCCTCCGCCTGGCAGGTGAACGAGAACGCCAAGAAGGACCT CCCTCCGCCTGGCAGGTGAACGAGAAAGCCAAGAAGGACCT < 41bp 1 0.769322853116451 1 0.567544102668762 experiment 0.461354293767098 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSPAN9 ENSG00000011105 CDS Human protein_coding chr12:3389553 chr12:3389559 nonsynonymous SNV 0.972 1 27 hm5C_associated_SNPs_9676 0 0 1 0 2 TSPAN9 chr12:3389649 5'GT 3389649 Upstream 91bp
chr12 4459032 4459032 1 + G A rs7309402 4459031 + 4459011 4459051 41 CAAATTTTGCAAAGATATGACGGTAAAGTATGACTCAAGAC CAAATTTTGCAAAGATATGACAGTAAAGTATGACTCAAGAC < 41bp 1 0.419445558427085 1 0.320029616355896 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TIGAR ENSG00000078237 CDS Human protein_coding chr12:4459031 chr12:4459032 synonymous SNV . 0 22 hm5C_associated_SNPs_9678 0 0 1 0 1 TIGAR chr12:4458985 3'AG 4458985 Downstream 48bp
chr12 4716513 4716513 1 + C A rs2255588 4716505 + 4716485 4716525 41 TTATTAAGGTGCTGGGTCTGCCGCCAGCCGGCTTCATTCAG TTATTAAGGTGCTGGGTCTGCCGCCAGCAGGCTTCATTCAG < 41bp 1 0.235517047639757 1 0.259628295898438 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4716505 chr12:4716513 synonymous SNV . 0 29 hm5C_associated_SNPs_9679 0 0 0 0 2 DYRK4 chr12:4716493 3'AG 4716493 Downstream 21bp
chr12 4716513 4716513 1 + C A rs2255588 4716505 + 4716485 4716525 41 TTATTAAGGTGCTGGGTCTGCCGCCAGCCGGCTTCATTCAG TTATTAAGGTGCTGGGTCTGCCGCCAGCAGGCTTCATTCAG < 41bp 1 0.235517047639757 1 0.259628295898438 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4716505 chr12:4716513 synonymous SNV . 0 29 hm5C_associated_SNPs_9679 0 0 0 0 2 DYRK4 chr12:4716553 5'GT 4716553 Upstream 41bp
chr12 6344415 6344415 1 + G A rs542130343 6344427 + 6344407 6344447 41 GTCCAGGAGTTTTACAAGGACACCTACAACAAGCTGAAAAC GTCCAGGAATTTTACAAGGACACCTACAACAAGCTGAAAAC < 41bp 1 0.351270997862004 1 0.347819030284882 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CD9 ENSG00000010278 CDS Human protein_coding chr12:6344427 chr12:6344415 synonymous SNV . 0 9 hm5C_associated_SNPs_9681 0 0 1 0 2 CD9 chr12:6344395 3'AG 6344395 Downstream 21bp
chr12 6344415 6344415 1 + G A rs542130343 6344427 + 6344407 6344447 41 GTCCAGGAGTTTTACAAGGACACCTACAACAAGCTGAAAAC GTCCAGGAATTTTACAAGGACACCTACAACAAGCTGAAAAC < 41bp 1 0.351270997862004 1 0.347819030284882 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CD9 ENSG00000010278 CDS Human protein_coding chr12:6344427 chr12:6344415 synonymous SNV . 0 9 hm5C_associated_SNPs_9681 0 0 1 0 2 CD9 chr12:6344493 5'GT 6344493 Upstream 79bp
chr12 6635478 6635478 1 + C A rs73259178 6635482 + 6635462 6635502 41 GGCAAACGTCACCCCCCCTTCCGGCTGCCTCAGGAACACAG GGCAAACGTCACCCCCACTTCCGGCTGCCTCAGGAACACAG < 41bp 1 0.338954604069429 1 0.356241315603256 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6635482 chr12:6635478 nonsynonymous SNV 0.777 4 17 hm5C_associated_SNPs_9697 0 0 1 0 2 NCAPD2 chr12:6635453 3'AG 6635453 Downstream 26bp
chr12 6635478 6635478 1 + C A rs73259178 6635482 + 6635462 6635502 41 GGCAAACGTCACCCCCCCTTCCGGCTGCCTCAGGAACACAG GGCAAACGTCACCCCCACTTCCGGCTGCCTCAGGAACACAG < 41bp 1 0.338954604069429 1 0.356241315603256 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6635482 chr12:6635478 nonsynonymous SNV 0.777 4 17 hm5C_associated_SNPs_9697 0 0 1 0 2 NCAPD2 chr12:6635537 5'GT 6635537 Upstream 60bp
chr12 6643703 6643703 1 + G A rs45568532 6643715 + 6643695 6643735 41 TCCTGTTCGACAGTCAGCCGCATCTTCTTTTGCGTCGCCAG TCCTGTTCAACAGTCAGCCGCATCTTCTTTTGCGTCGCCAG < 41bp 1 0.09703557965965 1 0.0631083250045776 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GAPDH ENSG00000111640 UTR5 Human protein_coding chr12:6643715 chr12:6643703 . . 0 9 hm5C_associated_SNPs_9711 0 0 1 0 1 GAPDH chr12:6643735 5'GT 6643735 Upstream 33bp
chr12 6643703 6643703 1 + G A rs45568532 6643718 + 6643698 6643738 41 TGTTCGACAGTCAGCCGCATCTTCTTTTGCGTCGCCAGGTG TGTTCAACAGTCAGCCGCATCTTCTTTTGCGTCGCCAGGTG < 41bp 1 0.219575875124446 1 0.109505116939545 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GAPDH ENSG00000111640 UTR5 Human protein_coding chr12:6643718 chr12:6643703 . . 0 6 hm5C_associated_SNPs_9712 0 0 1 0 1 GAPDH chr12:6643735 5'GT 6643735 Upstream 33bp
chr12 6643713 6643713 1 + C T rs367946267 6643715 + 6643695 6643735 41 TCCTGTTCGACAGTCAGCCGCATCTTCTTTTGCGTCGCCAG TCCTGTTCGACAGTCAGCTGCATCTTCTTTTGCGTCGCCAG < 41bp 1 0.10890058205923 1 0.0469537079334259 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GAPDH ENSG00000111640 UTR5 Human protein_coding chr12:6643715 chr12:6643713 . . 0 19 hm5C_associated_SNPs_9713 0 0 1 0 1 GAPDH chr12:6643735 5'GT 6643735 Upstream 23bp
chr12 6643713 6643713 1 + C T rs367946267 6643718 + 6643698 6643738 41 TGTTCGACAGTCAGCCGCATCTTCTTTTGCGTCGCCAGGTG TGTTCGACAGTCAGCTGCATCTTCTTTTGCGTCGCCAGGTG < 41bp 1 0.251241825679055 1 0.147297352552414 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GAPDH ENSG00000111640 UTR5 Human protein_coding chr12:6643718 chr12:6643713 . . 0 16 hm5C_associated_SNPs_9714 0 0 1 0 1 GAPDH chr12:6643735 5'GT 6643735 Upstream 23bp
chr12 6969625 6969625 1 + G A rs79451772 6969628 + 6969608 6969648 41 CAGCAGGATGCCCAGGAGTTCTTCCTTCACCTTATCAACAT CAGCAGGATGCCCAGGAATTCTTCCTTCACCTTATCAACAT < 41bp 1 0.295524587005062 1 0.0689154863357544 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control USP5 ENSG00000111667 CDS Human protein_coding chr12:6969628 chr12:6969625 synonymous SNV . 0 18 hm5C_associated_SNPs_9739 0 0 1 0 2 USP5 chr12:6969530 3'AG 6969530 Downstream 96bp
chr12 6969625 6969625 1 + G A rs79451772 6969628 + 6969608 6969648 41 CAGCAGGATGCCCAGGAGTTCTTCCTTCACCTTATCAACAT CAGCAGGATGCCCAGGAATTCTTCCTTCACCTTATCAACAT < 41bp 1 0.295524587005062 1 0.0689154863357544 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control USP5 ENSG00000111667 CDS Human protein_coding chr12:6969628 chr12:6969625 synonymous SNV . 0 18 hm5C_associated_SNPs_9739 0 0 1 0 2 USP5 chr12:6969655 5'GT 6969655 Upstream 31bp
chr12 6978344 6978344 1 + T C rs141972556 6978340 + 6978320 6978360 41 AAGGCATGTCTTTGGGGAGTCAGATGAGGTTAGTAGCCAAG AAGGCATGTCTTTGGGGAGTCAGACGAGGTTAGTAGCCAAG < 41bp 1 0.332205598667371 1 0.538480579853058 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TPI1 ENSG00000111669 CDS Human protein_coding chr12:6978340 chr12:6978344 synonymous SNV . 0 25 hm5C_associated_SNPs_9742 1 0 1 0 2 TPI1 chr12:6978263 3'AG 6978263 Downstream 82bp
chr12 6978344 6978344 1 + T C rs141972556 6978340 + 6978320 6978360 41 AAGGCATGTCTTTGGGGAGTCAGATGAGGTTAGTAGCCAAG AAGGCATGTCTTTGGGGAGTCAGACGAGGTTAGTAGCCAAG < 41bp 1 0.332205598667371 1 0.538480579853058 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TPI1 ENSG00000111669 CDS Human protein_coding chr12:6978340 chr12:6978344 synonymous SNV . 0 25 hm5C_associated_SNPs_9742 1 0 1 0 2 TPI1 chr12:6978347 5'GT 6978347 Upstream 4bp
chr12 7037504 7037504 1 + G A rs193192226 7037484 + 7037464 7037504 41 GGGGAGCTGCCGCCGCCGCCCCCCAGAGGCGCCGGAGCCCG GGGGAGCTGCCGCCGCCGCCCCCCAGAGGCGCCGGAGCCCA < 41bp 1 0.670696053569943 1 0.347865343093872 experiment 0.658607892860115 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATN1 ENSG00000111676 UTR5 Human protein_coding chr12:7037484 chr12:7037504 . . 0 41 hm5C_associated_SNPs_9747 0 0 1 0 1 ATN1 chr12:7037547 5'GT 7037547 Upstream 44bp
chr12 7037504 7037504 1 + G A rs193192226 7037485 + 7037465 7037505 41 GGGAGCTGCCGCCGCCGCCCCCCAGAGGCGCCGGAGCCCGG GGGAGCTGCCGCCGCCGCCCCCCAGAGGCGCCGGAGCCCAG < 41bp 1 0.374531600295591 1 0.518835425376892 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATN1 ENSG00000111676 UTR5 Human protein_coding chr12:7037485 chr12:7037504 . . 0 40 hm5C_associated_SNPs_9748 0 0 1 0 1 ATN1 chr12:7037547 5'GT 7037547 Upstream 44bp
chr12 7037504 7037504 1 + G A rs193192226 7037486 + 7037466 7037506 41 GGAGCTGCCGCCGCCGCCCCCCAGAGGCGCCGGAGCCCGGA GGAGCTGCCGCCGCCGCCCCCCAGAGGCGCCGGAGCCCAGA < 41bp 1 0.713892798824422 1 0.811642289161682 experiment 0.572214402351157 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATN1 ENSG00000111676 UTR5 Human protein_coding chr12:7037486 chr12:7037504 . . 0 39 hm5C_associated_SNPs_9749 0 0 1 0 1 ATN1 chr12:7037547 5'GT 7037547 Upstream 44bp
chr12 7037504 7037504 1 + G A rs193192226 7037487 + 7037467 7037507 41 GAGCTGCCGCCGCCGCCCCCCAGAGGCGCCGGAGCCCGGAA GAGCTGCCGCCGCCGCCCCCCAGAGGCGCCGGAGCCCAGAA < 41bp 1 0.73249769783191 1 0.942912697792053 experiment 0.53500460433618 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATN1 ENSG00000111676 UTR5 Human protein_coding chr12:7037487 chr12:7037504 . . 0 38 hm5C_associated_SNPs_9750 0 0 1 0 1 ATN1 chr12:7037547 5'GT 7037547 Upstream 44bp
chr12 7080186 7080186 1 + G A rs782495453 7080174 + 7080154 7080194 41 ATGCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAAC ATGCTCTGCCACCCAAGCGGCCCCGACTAGGGACAGGAAAC < 41bp 1 0.197325979726094 1 0.0570454299449921 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080174 chr12:7080186 nonsynonymous SNV 0.904 0 33 hm5C_associated_SNPs_9752 0 0 1 0 1 EMG1 chr12:7080253 5'GT 7080253 Upstream 68bp
chr12 7080186 7080186 1 + G A rs782495453 7080176 + 7080156 7080196 41 GCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAA GCTCTGCCACCCAAGCGGCCCCGACTAGGGACAGGAAACAA < 41bp 1 0.21258654314507 1 0.0555065870285034 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080176 chr12:7080186 nonsynonymous SNV 0.904 0 31 hm5C_associated_SNPs_9753 0 0 1 0 1 EMG1 chr12:7080253 5'GT 7080253 Upstream 68bp
chr12 7080186 7080186 1 + G A rs782495453 7080177 + 7080157 7080197 41 CTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAAG CTCTGCCACCCAAGCGGCCCCGACTAGGGACAGGAAACAAG < 41bp 1 0.364735286125283 1 0.0719850063323975 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080177 chr12:7080186 nonsynonymous SNV 0.904 0 30 hm5C_associated_SNPs_9754 0 0 1 0 1 EMG1 chr12:7080253 5'GT 7080253 Upstream 68bp
chr12 7080187 7080187 1 + C G rs11064480 7080174 + 7080154 7080194 41 ATGCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAAC ATGCTCTGCCACCCAAGCGGCCCCGACTAGGGGGAGGAAAC < 41bp 1 0.1830487406523 1 0.0509169101715088 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080174 chr12:7080187 nonsynonymous SNV 0.934 0 34 hm5C_associated_SNPs_9755 1 0 1 0 1 EMG1 chr12:7080253 5'GT 7080253 Upstream 67bp
chr12 7080187 7080187 1 + C G rs11064480 7080176 + 7080156 7080196 41 GCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAA GCTCTGCCACCCAAGCGGCCCCGACTAGGGGGAGGAAACAA < 41bp 1 0.189456459967908 1 0.0607316792011261 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080176 chr12:7080187 nonsynonymous SNV 0.934 0 32 hm5C_associated_SNPs_9756 1 0 1 0 1 EMG1 chr12:7080253 5'GT 7080253 Upstream 67bp
chr12 7080187 7080187 1 + C G rs11064480 7080177 + 7080157 7080197 41 CTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAAG CTCTGCCACCCAAGCGGCCCCGACTAGGGGGAGGAAACAAG < 41bp 1 0.357877273587568 1 0.114770323038101 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080177 chr12:7080187 nonsynonymous SNV 0.934 0 31 hm5C_associated_SNPs_9757 1 0 1 0 1 EMG1 chr12:7080253 5'GT 7080253 Upstream 67bp
chr12 7177214 7177214 1 + C T rs148573885 7177213 + 7177193 7177233 41 ACAGAGGATAATTGGAGGATCCGATGCAGATATTAAAAACT ACAGAGGATAATTGGAGGATCTGATGCAGATATTAAAAACT < 41bp 1 0.23708204112683 1 0.175717711448669 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C1S ENSG00000182326 CDS Human protein_coding chr12:7177213 chr12:7177214 synonymous SNV . 0 22 hm5C_associated_SNPs_9758 0 0 0 0 1 C1S chr12:7177159 3'AG 7177159 Downstream 56bp
chr12 7342619 7342619 1 + G T rs117442311 7342623 + 7342603 7342643 41 CCCTTCTTCGGGCAGTGTCGCCGTCCAGCCTGGTTGTTGAA CCCTTCTTCGGGCAGTTTCGCCGTCCAGCCTGGTTGTTGAA < 41bp 1 0.0866713113051408 1 0.42214697599411 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PEX5 ENSG00000139197 UTR5 Human protein_coding chr12:7342623 chr12:7342619 . . 0 17 hm5C_associated_SNPs_9759 1 0 1 0 1 PEX5 chr12:7342618 3'AG 7342618 Downstream 2bp
chr12 7342619 7342619 1 + G T rs117442311 7342624 + 7342604 7342644 41 CCTTCTTCGGGCAGTGTCGCCGTCCAGCCTGGTTGTTGAAG CCTTCTTCGGGCAGTTTCGCCGTCCAGCCTGGTTGTTGAAG < 41bp 1 0.114130354326919 1 0.167798787355423 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PEX5 ENSG00000139197 UTR5 Human protein_coding chr12:7342624 chr12:7342619 . . 0 16 hm5C_associated_SNPs_9760 1 0 1 0 1 PEX5 chr12:7342618 3'AG 7342618 Downstream 2bp
chr12 7342636 7342636 1 + T A rs113752912 7342623 + 7342603 7342643 41 CCCTTCTTCGGGCAGTGTCGCCGTCCAGCCTGGTTGTTGAA CCCTTCTTCGGGCAGTGTCGCCGTCCAGCCTGGATGTTGAA < 41bp 1 0.0686280957484024 1 0.293141782283783 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PEX5 ENSG00000139197 UTR5 Human protein_coding chr12:7342623 chr12:7342636 . . 0 34 hm5C_associated_SNPs_9761 1 0 1 0 1 PEX5 chr12:7342618 3'AG 7342618 Downstream 19bp
chr12 7342636 7342636 1 + T A rs113752912 7342624 + 7342604 7342644 41 CCTTCTTCGGGCAGTGTCGCCGTCCAGCCTGGTTGTTGAAG CCTTCTTCGGGCAGTGTCGCCGTCCAGCCTGGATGTTGAAG < 41bp 1 0.120639191774718 1 0.119431734085083 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PEX5 ENSG00000139197 UTR5 Human protein_coding chr12:7342624 chr12:7342636 . . 0 33 hm5C_associated_SNPs_9762 1 0 1 0 1 PEX5 chr12:7342618 3'AG 7342618 Downstream 19bp
chr12 16053933 16053933 1 + A G rs74063293 16053943 + 16053923 16053963 41 CAGAGACAACAGAAGAGGAGCTAGGTAAATGCTATGGAATT CAGAGACAACGGAAGAGGAGCTAGGTAAATGCTATGGAATT < 41bp 1 0.481689718535292 1 0.447614103555679 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control STRAP ENSG00000023734 CDS Human protein_coding chr12:16053943 chr12:16053933 synonymous SNV . 0 11 hm5C_associated_SNPs_9766 0 0 1 0 2 STRAP chr12:16053881 3'AG 16053881 Downstream 53bp
chr12 16053933 16053933 1 + A G rs74063293 16053943 + 16053923 16053963 41 CAGAGACAACAGAAGAGGAGCTAGGTAAATGCTATGGAATT CAGAGACAACGGAAGAGGAGCTAGGTAAATGCTATGGAATT < 41bp 1 0.481689718535292 1 0.447614103555679 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control STRAP ENSG00000023734 CDS Human protein_coding chr12:16053943 chr12:16053933 synonymous SNV . 0 11 hm5C_associated_SNPs_9766 0 0 1 0 2 STRAP chr12:16053946 5'GT 16053946 Upstream 14bp
chr12 19593628 19593628 1 + A G rs550665700 19593624 + 19593604 19593644 41 GCCCAGATCCTCTGGCGGAGCAGAAGAGGGCCTTGATGTAC GCCCAGATCCTCTGGCGGAGCAGAGGAGGGCCTTGATGTAC < 41bp 1 0.797517682101164 1 0.675576567649841 experiment 0.404964635797672 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control AEBP2 ENSG00000139154 UTR5 Human protein_coding chr12:19593624 chr12:19593628 . . 0 25 hm5C_associated_SNPs_9769 0 0 0 0 1 AEBP2 chr12:19593661 5'GT 19593661 Upstream 34bp
chr12 27731113 27731113 1 + G A rs114441949 27731104 + 27731084 27731124 41 GTATAAAAGAACGTGTGGATCACTTTGCTGAGTACATCCAA GTATAAAAGAACGTGTGGATCACTTTGCTAAGTACATCCAA < 41bp 1 0.248770895031941 1 0.0729583203792572 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPFIBP1 ENSG00000110841 UTR5 Human protein_coding chr12:27731104 chr12:27731113 . . 0 30 hm5C_associated_SNPs_9770 0 0 0 0 2 PPFIBP1 chr12:27731085 3'AG 27731085 Downstream 29bp
chr12 27731113 27731113 1 + G A rs114441949 27731104 + 27731084 27731124 41 GTATAAAAGAACGTGTGGATCACTTTGCTGAGTACATCCAA GTATAAAAGAACGTGTGGATCACTTTGCTAAGTACATCCAA < 41bp 1 0.248770895031941 1 0.0729583203792572 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPFIBP1 ENSG00000110841 UTR5 Human protein_coding chr12:27731104 chr12:27731113 . . 0 30 hm5C_associated_SNPs_9770 0 0 0 0 2 PPFIBP1 chr12:27731172 5'GT 27731172 Upstream 60bp
chr12 27788021 27788021 1 + G A rs2075378 27788020 + 27788000 27788040 41 CCCAGATTCAACAGCAGAAACGCTTGTTGAATGGCTTCAGA CCCAGATTCAACAGCAGAAACACTTGTTGAATGGCTTCAGA < 41bp 1 0.295184264277323 1 0.130691111087799 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27788020 chr12:27788021 synonymous SNV . 0 22 hm5C_associated_SNPs_9771 0 0 1 0 1 PPFIBP1 chr12:27788048 5'GT 27788048 Upstream 28bp
chr12 31236917 31236917 1 + G A rs146986956 31236904 + 31236884 31236924 41 GTCTTCTTCCTGCGAAGGGGCTGCAGGCACCCCGAGGCCTG GTCTTCTTCCTGCGAAGGGGCTGCAGGCACCCCAAGGCCTG < 41bp 1 0.682259950034307 1 0.438158363103867 experiment 0.635480099931387 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31236904 chr12:31236917 nonsynonymous SNV . 0 34 hm5C_associated_SNPs_9786 0 0 1 0 1 DDX11 chr12:31236995 5'GT 31236995 Upstream 79bp
chr12 48357444 48357444 1 + G T rs370060356 48357442 + 48357422 48357462 41 TCCTCAAGCTGGCAGGTGGTCGGGGGAGCGGCCGGAGAGGA TCCTCAAGCTGGCAGGTGGTCGTGGGAGCGGCCGGAGAGGA < 41bp 1 0.792313648968264 1 0.538577854633331 experiment 0.415372702063472 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM106C ENSG00000134291 UTR5 Human protein_coding chr12:48357442 chr12:48357444 . . 0 23 hm5C_associated_SNPs_9790 0 0 1 0 1 TMEM106C chr12:48357487 5'GT 48357487 Upstream 44bp
chr12 48358057 48358057 1 + C T rs34116679 48358052 + 48358032 48358072 41 CATTCCGCTGCTGCTCGCCCCTCCTCCTGCAGGCGAAAGCA CATTCCGCTGCTGCTCGCCCCTCCTTCTGCAGGCGAAAGCA < 41bp 1 0.537772445358061 1 0.74234926700592 experiment 0.924455109283878 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TMEM106C ENSG00000134291 CDS Human protein_coding chr12:48358052 chr12:48358057 nonsynonymous SNV 0.001 0 26 hm5C_associated_SNPs_9791 0 0 1 0 1 TMEM106C chr12:48357992 3'AG 48357992 Downstream 66bp
chr12 49663409 49663409 1 + A C rs115048428 49663396 + 49663376 49663416 41 AGGAGATGATTCCTTCAACACCTTCTTCAGTGAAACGGGTG AGGAGATGATTCCTTCAACACCTTCTTCAGTGACACGGGTG < 41bp 1 0.0572182954477959 1 0.0372923612594604 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TUBA1C ENSG00000167553 CDS Human protein_coding chr12:49663396 chr12:49663409 nonsynonymous SNV 0.854 2 34 hm5C_associated_SNPs_9793 0 0 1 0 1 TUBA1C chr12:49663470 5'GT 49663470 Upstream 62bp
chr12 49888751 49888751 1 + C A rs200315994 49888749 + 49888729 49888769 41 ATGCCAGAGAATTGGAGGATCCCGAGTCTGCCATGCTAGAT ATGCCAGAGAATTGGAGGATCCAGAGTCTGCCATGCTAGAT < 41bp 1 0.614720401773003 1 0.657199025154114 experiment 0.770559196453994 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SPATS2 ENSG00000123352 CDS Human protein_coding chr12:49888749 chr12:49888751 synonymous SNV . 0 23 hm5C_associated_SNPs_9794 0 0 1 0 1 SPATS2 chr12:49888785 5'GT 49888785 Upstream 35bp
chr12 50452852 50452852 1 + C T rs141895319 50452871 + 50452851 50452891 41 GCCAAGTCTCCAAGAATGACCTGTATCATGCTGGGGAGCTG GTCAAGTCTCCAAGAATGACCTGTATCATGCTGGGGAGCTG < 41bp 1 0.537863115077784 1 0.192070215940475 experiment 0.924273769844432 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50452871 chr12:50452852 synonymous SNV . 0 2 hm5C_associated_SNPs_9798 0 0 0 0 1 ASIC1 chr12:50452911 5'GT 50452911 Upstream 60bp
chr12 51117100 51117100 1 + T G rs536039018 51117087 + 51117067 51117107 41 CCTCACGGCCACGCTGCCCACTGTCCGAATGATTGTTGATG CCTCACGGCCACGCTGCCCACTGTCCGAATGATGGTTGATG < 41bp 1 0.10413878740563 1 0.0681718587875366 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51117087 chr12:51117100 nonsynonymous SNV 0.994 3 34 hm5C_associated_SNPs_9800 0 0 1 0 1 DIP2B chr12:51117106 5'GT 51117106 Upstream 7bp
chr12 52631299 52631299 1 + A G rs374707928 52631311 + 52631291 52631331 41 AGGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAA AGGTACGAGGATGAAATTAACCACCGCACAGCTGCTGAGAA < 41bp 1 0.123381639522689 1 0.0393050611019135 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631311 chr12:52631299 synonymous SNV . 0 9 hm5C_associated_SNPs_9804 0 0 0 0 2 KRT7 chr12:52631293 3'AG 52631293 Downstream 7bp
chr12 52631299 52631299 1 + A G rs374707928 52631311 + 52631291 52631331 41 AGGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAA AGGTACGAGGATGAAATTAACCACCGCACAGCTGCTGAGAA < 41bp 1 0.123381639522689 1 0.0393050611019135 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631311 chr12:52631299 synonymous SNV . 0 9 hm5C_associated_SNPs_9804 0 0 0 0 2 KRT7 chr12:52631353 5'GT 52631353 Upstream 55bp
chr12 52631299 52631299 1 + A G rs374707928 52631312 + 52631292 52631332 41 GGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAAT GGTACGAGGATGAAATTAACCACCGCACAGCTGCTGAGAAT < 41bp 1 0.661088777226747 1 0.286792576313019 experiment 0.677822445546507 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631312 chr12:52631299 synonymous SNV . 0 8 hm5C_associated_SNPs_9805 0 0 0 0 2 KRT7 chr12:52631293 3'AG 52631293 Downstream 7bp
chr12 52631299 52631299 1 + A G rs374707928 52631312 + 52631292 52631332 41 GGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAAT GGTACGAGGATGAAATTAACCACCGCACAGCTGCTGAGAAT < 41bp 1 0.661088777226747 1 0.286792576313019 experiment 0.677822445546507 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631312 chr12:52631299 synonymous SNV . 0 8 hm5C_associated_SNPs_9805 0 0 0 0 2 KRT7 chr12:52631353 5'GT 52631353 Upstream 55bp
chr12 52631299 52631299 1 + A G rs374707928 52631314 + 52631294 52631334 41 TACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGA TACGAGGATGAAATTAACCACCGCACAGCTGCTGAGAATGA < 41bp 1 0.223934487997492 1 0.0968449711799622 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631314 chr12:52631299 synonymous SNV . 0 6 hm5C_associated_SNPs_9806 0 0 0 0 2 KRT7 chr12:52631293 3'AG 52631293 Downstream 7bp
chr12 52631299 52631299 1 + A G rs374707928 52631314 + 52631294 52631334 41 TACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGA TACGAGGATGAAATTAACCACCGCACAGCTGCTGAGAATGA < 41bp 1 0.223934487997492 1 0.0968449711799622 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631314 chr12:52631299 synonymous SNV . 0 6 hm5C_associated_SNPs_9806 0 0 0 0 2 KRT7 chr12:52631353 5'GT 52631353 Upstream 55bp
chr12 52631299 52631299 1 + A G rs374707928 52631315 + 52631295 52631335 41 ACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGAG ACGAGGATGAAATTAACCACCGCACAGCTGCTGAGAATGAG < 41bp 1 0.150366004874493 1 0.109043955802917 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631315 chr12:52631299 synonymous SNV . 0 5 hm5C_associated_SNPs_9807 0 0 0 0 2 KRT7 chr12:52631293 3'AG 52631293 Downstream 7bp
chr12 52631299 52631299 1 + A G rs374707928 52631315 + 52631295 52631335 41 ACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGAG ACGAGGATGAAATTAACCACCGCACAGCTGCTGAGAATGAG < 41bp 1 0.150366004874493 1 0.109043955802917 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631315 chr12:52631299 synonymous SNV . 0 5 hm5C_associated_SNPs_9807 0 0 0 0 2 KRT7 chr12:52631353 5'GT 52631353 Upstream 55bp
chr12 52631312 52631312 1 + C T rs184504813 52631311 + 52631291 52631331 41 AGGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAA AGGTACGAAGATGAAATTAACTACCGCACAGCTGCTGAGAA < 41bp 1 0.232754761191038 1 0.0427255630493164 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631311 chr12:52631312 nonsynonymous SNV 0.160 1 22 hm5C_associated_SNPs_9808 0 0 0 0 2 KRT7 chr12:52631293 3'AG 52631293 Downstream 20bp
chr12 52631312 52631312 1 + C T rs184504813 52631311 + 52631291 52631331 41 AGGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAA AGGTACGAAGATGAAATTAACTACCGCACAGCTGCTGAGAA < 41bp 1 0.232754761191038 1 0.0427255630493164 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631311 chr12:52631312 nonsynonymous SNV 0.160 1 22 hm5C_associated_SNPs_9808 0 0 0 0 2 KRT7 chr12:52631353 5'GT 52631353 Upstream 42bp
chr12 52631312 52631312 1 + C T rs184504813 52631314 + 52631294 52631334 41 TACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGA TACGAAGATGAAATTAACTACCGCACAGCTGCTGAGAATGA < 41bp 1 0.224879023264883 1 0.112587213516235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631314 chr12:52631312 nonsynonymous SNV 0.160 1 19 hm5C_associated_SNPs_9809 0 0 0 0 2 KRT7 chr12:52631293 3'AG 52631293 Downstream 20bp
chr12 52631312 52631312 1 + C T rs184504813 52631314 + 52631294 52631334 41 TACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGA TACGAAGATGAAATTAACTACCGCACAGCTGCTGAGAATGA < 41bp 1 0.224879023264883 1 0.112587213516235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631314 chr12:52631312 nonsynonymous SNV 0.160 1 19 hm5C_associated_SNPs_9809 0 0 0 0 2 KRT7 chr12:52631353 5'GT 52631353 Upstream 42bp
chr12 52631312 52631312 1 + C T rs184504813 52631315 + 52631295 52631335 41 ACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGAG ACGAAGATGAAATTAACTACCGCACAGCTGCTGAGAATGAG < 41bp 1 0.200175816396194 1 0.148708313703537 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631315 chr12:52631312 nonsynonymous SNV 0.160 1 18 hm5C_associated_SNPs_9810 0 0 0 0 2 KRT7 chr12:52631293 3'AG 52631293 Downstream 20bp
chr12 52631312 52631312 1 + C T rs184504813 52631315 + 52631295 52631335 41 ACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGAG ACGAAGATGAAATTAACTACCGCACAGCTGCTGAGAATGAG < 41bp 1 0.200175816396194 1 0.148708313703537 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631315 chr12:52631312 nonsynonymous SNV 0.160 1 18 hm5C_associated_SNPs_9810 0 0 0 0 2 KRT7 chr12:52631353 5'GT 52631353 Upstream 42bp
chr12 52631313 52631313 1 + A G rs6580870 52631311 + 52631291 52631331 41 AGGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAA AGGTACGAAGATGAAATTAACCGCCGCACAGCTGCTGAGAA < 41bp 1 0.160012589176839 1 0.0389615595340729 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631311 chr12:52631313 nonsynonymous SNV 0.144 0 23 hm5C_associated_SNPs_9811 0 0 0 0 2 KRT7 chr12:52631293 3'AG 52631293 Downstream 21bp
chr12 52631313 52631313 1 + A G rs6580870 52631311 + 52631291 52631331 41 AGGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAA AGGTACGAAGATGAAATTAACCGCCGCACAGCTGCTGAGAA < 41bp 1 0.160012589176839 1 0.0389615595340729 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631311 chr12:52631313 nonsynonymous SNV 0.144 0 23 hm5C_associated_SNPs_9811 0 0 0 0 2 KRT7 chr12:52631353 5'GT 52631353 Upstream 41bp
chr12 52631313 52631313 1 + A G rs6580870 52631312 + 52631292 52631332 41 GGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAAT GGTACGAAGATGAAATTAACCGCCGCACAGCTGCTGAGAAT < 41bp 1 0.677723359492381 1 0.358838826417923 experiment 0.644553281015239 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631312 chr12:52631313 nonsynonymous SNV 0.144 0 22 hm5C_associated_SNPs_9812 0 0 0 0 2 KRT7 chr12:52631293 3'AG 52631293 Downstream 21bp
chr12 52631313 52631313 1 + A G rs6580870 52631312 + 52631292 52631332 41 GGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAAT GGTACGAAGATGAAATTAACCGCCGCACAGCTGCTGAGAAT < 41bp 1 0.677723359492381 1 0.358838826417923 experiment 0.644553281015239 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631312 chr12:52631313 nonsynonymous SNV 0.144 0 22 hm5C_associated_SNPs_9812 0 0 0 0 2 KRT7 chr12:52631353 5'GT 52631353 Upstream 41bp
chr12 52631313 52631313 1 + A G rs6580870 52631314 + 52631294 52631334 41 TACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGA TACGAAGATGAAATTAACCGCCGCACAGCTGCTGAGAATGA < 41bp 1 0.196474026777452 1 0.110420614480972 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631314 chr12:52631313 nonsynonymous SNV 0.144 0 20 hm5C_associated_SNPs_9813 0 0 0 0 2 KRT7 chr12:52631293 3'AG 52631293 Downstream 21bp
chr12 52631313 52631313 1 + A G rs6580870 52631314 + 52631294 52631334 41 TACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGA TACGAAGATGAAATTAACCGCCGCACAGCTGCTGAGAATGA < 41bp 1 0.196474026777452 1 0.110420614480972 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631314 chr12:52631313 nonsynonymous SNV 0.144 0 20 hm5C_associated_SNPs_9813 0 0 0 0 2 KRT7 chr12:52631353 5'GT 52631353 Upstream 41bp
chr12 52631313 52631313 1 + A G rs6580870 52631315 + 52631295 52631335 41 ACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGAG ACGAAGATGAAATTAACCGCCGCACAGCTGCTGAGAATGAG < 41bp 1 0.114142747156133 1 0.0826995670795441 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631315 chr12:52631313 nonsynonymous SNV 0.144 0 19 hm5C_associated_SNPs_9814 0 0 0 0 2 KRT7 chr12:52631293 3'AG 52631293 Downstream 21bp
chr12 52631313 52631313 1 + A G rs6580870 52631315 + 52631295 52631335 41 ACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGAG ACGAAGATGAAATTAACCGCCGCACAGCTGCTGAGAATGAG < 41bp 1 0.114142747156133 1 0.0826995670795441 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631315 chr12:52631313 nonsynonymous SNV 0.144 0 19 hm5C_associated_SNPs_9814 0 0 0 0 2 KRT7 chr12:52631353 5'GT 52631353 Upstream 41bp
chr12 52635360 52635360 1 + G A rs999665 52635378 + 52635358 52635398 41 GCGCAGTATGAGGAGATGGCCAAATGCAGCCGGGCTGAGGC GCACAGTATGAGGAGATGGCCAAATGCAGCCGGGCTGAGGC < 41bp 1 0.373477342827096 1 0.524900376796722 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52635378 chr12:52635360 synonymous SNV . 0 3 hm5C_associated_SNPs_9815 0 0 1 0 1 KRT7 chr12:52635420 5'GT 52635420 Upstream 61bp
chr12 52636843 52636843 1 + G A rs10564 52636840 + 52636820 52636860 41 GGGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGAT GGGAAGCATGGGGACGACCTCCGAAATACCCGGAATGAGAT < 41bp 1 0.395993698069035 1 0.702654838562012 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636840 chr12:52636843 synonymous SNV . 0 24 hm5C_associated_SNPs_9816 0 0 0 0 2 KRT7 chr12:52636796 3'AG 52636796 Downstream 48bp
chr12 52636843 52636843 1 + G A rs10564 52636840 + 52636820 52636860 41 GGGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGAT GGGAAGCATGGGGACGACCTCCGAAATACCCGGAATGAGAT < 41bp 1 0.395993698069035 1 0.702654838562012 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636840 chr12:52636843 synonymous SNV . 0 24 hm5C_associated_SNPs_9816 0 0 0 0 2 KRT7 chr12:52636921 5'GT 52636921 Upstream 79bp
chr12 52636843 52636843 1 + G A rs10564 52636841 + 52636821 52636861 41 GGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGATT GGAAGCATGGGGACGACCTCCGAAATACCCGGAATGAGATT < 41bp 1 0.515026829456894 1 0.769826531410217 experiment 0.969946341086212 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636841 chr12:52636843 synonymous SNV . 0 23 hm5C_associated_SNPs_9817 0 0 0 0 2 KRT7 chr12:52636796 3'AG 52636796 Downstream 48bp
chr12 52636843 52636843 1 + G A rs10564 52636841 + 52636821 52636861 41 GGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGATT GGAAGCATGGGGACGACCTCCGAAATACCCGGAATGAGATT < 41bp 1 0.515026829456894 1 0.769826531410217 experiment 0.969946341086212 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636841 chr12:52636843 synonymous SNV . 0 23 hm5C_associated_SNPs_9817 0 0 0 0 2 KRT7 chr12:52636921 5'GT 52636921 Upstream 79bp
chr12 52636874 52636874 1 + C T rs7963792 52636873 + 52636853 52636893 41 AATGAGATTTCAGAGATGAACCGGGCCATCCAGAGGCTGCA AATGAGATTTCAGAGATGAACTGGGCCATCCAGAGGCTGCA < 41bp 1 0.626024823938124 1 0.224676907062531 experiment 0.747950352123752 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636873 chr12:52636874 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_9818 0 0 0 0 2 KRT7 chr12:52636796 3'AG 52636796 Downstream 79bp
chr12 52636874 52636874 1 + C T rs7963792 52636873 + 52636853 52636893 41 AATGAGATTTCAGAGATGAACCGGGCCATCCAGAGGCTGCA AATGAGATTTCAGAGATGAACTGGGCCATCCAGAGGCTGCA < 41bp 1 0.626024823938124 1 0.224676907062531 experiment 0.747950352123752 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636873 chr12:52636874 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_9818 0 0 0 0 2 KRT7 chr12:52636921 5'GT 52636921 Upstream 48bp
chr12 53342963 53342963 1 + C T rs141170056 53342950 + 53342930 53342970 41 TCCTGTCCTTTCTCTCTCCCCGGACAGCATGAGCTTCACCA TCCTGTCCTTTCTCTCTCCCCGGACAGCATGAGTTTCACCA < 41bp 1 0.168529597818746 1 0.320132225751877 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT18 ENSG00000111057 CDS Human protein_coding chr12:53342950 chr12:53342963 synonymous SNV . 0 34 hm5C_associated_SNPs_9823 0 0 1 0 1 KRT18 chr12:53342957 3'AG 53342957 Downstream 7bp
chr12 53342963 53342963 1 + C T rs141170056 53342977 + 53342957 53342997 41 CATGAGCTTCACCACTCGCTCCACCTTCTCCACCAACTACC CATGAGTTTCACCACTCGCTCCACCTTCTCCACCAACTACC < 41bp 1 0.128475279152756 1 0.108160674571991 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control KRT18 ENSG00000111057 CDS Human protein_coding chr12:53342977 chr12:53342963 synonymous SNV . 0 7 hm5C_associated_SNPs_9824 0 0 1 0 1 KRT18 chr12:53342957 3'AG 53342957 Downstream 7bp
chr12 53342963 53342963 1 + C T rs141170056 53342978 + 53342958 53342998 41 ATGAGCTTCACCACTCGCTCCACCTTCTCCACCAACTACCG ATGAGTTTCACCACTCGCTCCACCTTCTCCACCAACTACCG < 41bp 1 0.242406221163394 1 0.0299873650074005 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KRT18 ENSG00000111057 CDS Human protein_coding chr12:53342978 chr12:53342963 synonymous SNV . 0 6 hm5C_associated_SNPs_9825 0 0 1 0 1 KRT18 chr12:53342957 3'AG 53342957 Downstream 7bp
chr12 53342963 53342963 1 + C T rs141170056 53342980 + 53342960 53343000 41 GAGCTTCACCACTCGCTCCACCTTCTCCACCAACTACCGGT GAGTTTCACCACTCGCTCCACCTTCTCCACCAACTACCGGT < 41bp 1 0.0182348888402191 1 0.0171572268009186 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control KRT18 ENSG00000111057 CDS Human protein_coding chr12:53342980 chr12:53342963 synonymous SNV . 0 4 hm5C_associated_SNPs_9826 0 0 1 0 1 KRT18 chr12:53342957 3'AG 53342957 Downstream 7bp
chr12 53342963 53342963 1 + C T rs141170056 53342981 + 53342961 53343001 41 AGCTTCACCACTCGCTCCACCTTCTCCACCAACTACCGGTC AGTTTCACCACTCGCTCCACCTTCTCCACCAACTACCGGTC < 41bp 1 0.171874510752202 1 0.0812294185161591 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control KRT18 ENSG00000111057 CDS Human protein_coding chr12:53342981 chr12:53342963 synonymous SNV . 0 3 hm5C_associated_SNPs_9827 0 0 1 0 1 KRT18 chr12:53342957 3'AG 53342957 Downstream 7bp
chr12 53412610 53412610 1 + C T rs185747457 53412624 + 53412604 53412644 41 CGATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCA CGATGATGATGTGTATAGGGCGCCTCCAATTGACCGTTCCA < 41bp 1 0.327892162090649 1 0.0807921886444092 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412624 chr12:53412610 synonymous SNV . 0 7 hm5C_associated_SNPs_9828 0 0 1 0 1 EIF4B chr12:53412582 3'AG 53412582 Downstream 29bp
chr12 53412610 53412610 1 + C T rs185747457 53412626 + 53412606 53412646 41 ATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATC ATGATGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATC < 41bp 1 0.0498288947359465 1 0.0546877980232239 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412626 chr12:53412610 synonymous SNV . 0 5 hm5C_associated_SNPs_9829 0 0 1 0 1 EIF4B chr12:53412582 3'AG 53412582 Downstream 29bp
chr12 53412646 53412646 1 + C A rs200433061 53412626 + 53412606 53412646 41 ATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATC ATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATA < 41bp 1 0.0477030368376982 1 0.0349003672599792 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412626 chr12:53412646 synonymous SNV . 0 41 hm5C_associated_SNPs_9830 0 0 1 0 1 EIF4B chr12:53412582 3'AG 53412582 Downstream 65bp
chr12 53427597 53427597 1 + C A rs115214256 53427592 + 53427572 53427612 41 AAGTTTCATTTAACTTAGGTCCCCCCCAAAGACCCAAACTG AAGTTTCATTTAACTTAGGTCCCCCACAAAGACCCAAACTG < 41bp 1 0.0503697329404807 1 0.0634445250034332 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53427592 chr12:53427597 synonymous SNV . 0 26 hm5C_associated_SNPs_9831 0 0 1 0 1 EIF4B chr12:53427590 3'AG 53427590 Downstream 8bp
chr12 53428432 53428432 1 + G A rs369208771 53428436 + 53428416 53428456 41 AAGAAACTCAGGAACGGGAACGGTCGAGGACAGGAAGTGAG AAGAAACTCAGGAACGAGAACGGTCGAGGACAGGAAGTGAG < 41bp 1 0.27368727231328 1 0.507350444793701 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53428436 chr12:53428432 synonymous SNV . 0 17 hm5C_associated_SNPs_9832 0 0 1 0 2 EIF4B chr12:53428396 3'AG 53428396 Downstream 37bp
chr12 53428432 53428432 1 + G A rs369208771 53428436 + 53428416 53428456 41 AAGAAACTCAGGAACGGGAACGGTCGAGGACAGGAAGTGAG AAGAAACTCAGGAACGAGAACGGTCGAGGACAGGAAGTGAG < 41bp 1 0.27368727231328 1 0.507350444793701 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53428436 chr12:53428432 synonymous SNV . 0 17 hm5C_associated_SNPs_9832 0 0 1 0 2 EIF4B chr12:53428493 5'GT 53428493 Upstream 62bp
chr12 53433089 53433089 1 + C A rs1548204 53433101 + 53433081 53433121 41 GGTCCAGGCGACGGAGGGAACAGAGACCACTGGAAGGAGTC GGTCCAGGAGACGGAGGGAACAGAGACCACTGGAAGGAGTC < 41bp 1 0.720861972057572 1 0.625191807746887 experiment 0.558276055884856 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53433101 chr12:53433089 synonymous SNV . 0 9 hm5C_associated_SNPs_9833 0 0 0 0 2 EIF4B chr12:53433022 3'AG 53433022 Downstream 68bp
chr12 53433089 53433089 1 + C A rs1548204 53433101 + 53433081 53433121 41 GGTCCAGGCGACGGAGGGAACAGAGACCACTGGAAGGAGTC GGTCCAGGAGACGGAGGGAACAGAGACCACTGGAAGGAGTC < 41bp 1 0.720861972057572 1 0.625191807746887 experiment 0.558276055884856 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53433101 chr12:53433089 synonymous SNV . 0 9 hm5C_associated_SNPs_9833 0 0 0 0 2 EIF4B chr12:53433127 5'GT 53433127 Upstream 39bp
chr12 53433486 53433486 1 + C T rs8916 53433478 + 53433458 53433498 41 CAAAGAAACCTGAGGAAAATCCAGCTTCCGTAAGTGTTGAA CAAAGAAACCTGAGGAAAATCCAGCTTCTGTAAGTGTTGAA < 41bp 1 0.278697294034122 1 0.22906705737114 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53433478 chr12:53433486 synonymous SNV . 0 29 hm5C_associated_SNPs_9834 0 0 1 0 2 EIF4B chr12:53433414 3'AG 53433414 Downstream 73bp
chr12 53433486 53433486 1 + C T rs8916 53433478 + 53433458 53433498 41 CAAAGAAACCTGAGGAAAATCCAGCTTCCGTAAGTGTTGAA CAAAGAAACCTGAGGAAAATCCAGCTTCTGTAAGTGTTGAA < 41bp 1 0.278697294034122 1 0.22906705737114 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53433478 chr12:53433486 synonymous SNV . 0 29 hm5C_associated_SNPs_9834 0 0 1 0 2 EIF4B chr12:53433486 5'GT 53433486 Upstream 1bp
chr12 53690217 53690217 1 + G A rs113187830 53690215 + 53690195 53690235 41 TTTTTCTTTCTTTTTTGAGACGGAATTTCGCTCTGTCGCCC TTTTTCTTTCTTTTTTGAGACGAAATTTCGCTCTGTCGCCC < 41bp 1 0.50880426178624 1 0.394164144992828 experiment 0.982391476427519 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PFDN5 ENSG00000123349 CDS Human protein_coding chr12:53690215 chr12:53690217 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_9844 0 0 1 0 1 PFDN5 chr12:53690214 3'AG 53690214 Downstream 4bp
chr12 53700848 53700848 1 + C T rs1534282 53700859 + 53700839 53700879 41 GCGGCTTCACTGGCGGTCACCACACCCGAGAGGGTGCCTTG GCGGCTTCATTGGCGGTCACCACACCCGAGAGGGTGCCTTG < 41bp 1 0.555101354501865 1 0.280366361141205 experiment 0.88979729099627 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C12orf10 ENSG00000139637 CDS Human protein_coding chr12:53700859 chr12:53700848 nonsynonymous SNV 0.995 0 10 hm5C_associated_SNPs_9845 0 0 1 0 1 C12orf10 chr12:53700750 3'AG 53700750 Downstream 99bp
chr12 54678342 54678342 1 + C A rs537037310 54678327 + 54678307 54678347 41 CAACTTTATTCCATATTGTTCAACAGGAAACAAAGCTTAGC CAACTTTATTCCATATTGTTCAACAGGAAACAAAGATTAGC < 41bp 1 0.252524421838109 1 0.138254970312119 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HNRNPA1P10 ENSG00000258344 ncRNA_intronic Human sense_overlapping chr12:54678327 chr12:54678342 . . 0 36 hm5C_associated_SNPs_9853 0 0 1 2 1 HNRNPA1P10 chr12:54678333 3'AG 54678333 Downstream 10bp
chr12 54943480 54943480 1 + G A rs115589692 54943498 + 54943478 54943518 41 AGGAGCCGCAGGAGCTGCAGCTCTGCCAGCTTGGGCCGAGC AGAAGCCGCAGGAGCTGCAGCTCTGCCAGCTTGGGCCGAGC < 41bp 1 0.342861597123349 1 0.747929215431213 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDE1B ENSG00000123360 UTR5 Human protein_coding chr12:54943498 chr12:54943480 . . 0 3 hm5C_associated_SNPs_9854 0 0 0 0 1 PDE1B chr12:54943556 5'GT 54943556 Upstream 77bp
chr12 54943488 54943488 1 + G C rs568127468 54943498 + 54943478 54943518 41 AGGAGCCGCAGGAGCTGCAGCTCTGCCAGCTTGGGCCGAGC AGGAGCCGCACGAGCTGCAGCTCTGCCAGCTTGGGCCGAGC < 41bp 1 0.342018675462867 1 0.496656954288483 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDE1B ENSG00000123360 UTR5 Human protein_coding chr12:54943498 chr12:54943488 . . 0 11 hm5C_associated_SNPs_9855 0 0 0 0 1 PDE1B chr12:54943556 5'GT 54943556 Upstream 69bp
chr12 56435858 56435858 1 + C T rs555702040 56435855 + 56435835 56435875 41 TTGCCGTTCTTGAAGCCCGTCTCCTAAGGATTCTCCCGGTG TTGCCGTTCTTGAAGCCCGTCTCTTAAGGATTCTCCCGGTG < 41bp 1 0.132818429409767 1 0.0337993800640106 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS26 ENSG00000197728 UTR5 Human protein_coding chr12:56435855 chr12:56435858 . . 0 24 hm5C_associated_SNPs_9862 0 0 1 0 1 RPS26 chr12:56435953 5'GT 56435953 Upstream 96bp
chr12 56510500 56510500 1 + C A rs376739018 56510516 + 56510496 56510536 41 CTGACCTCGGCACTTAGCATCATCACAGCAAACTAACTGTA CTGAACTCGGCACTTAGCATCATCACAGCAAACTAACTGTA < 41bp 1 0.354518831110484 1 0.0819647908210754 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL41 ENSG00000229117 UTR5 Human protein_coding chr12:56510516 chr12:56510500 . . 0 5 hm5C_associated_SNPs_9872 0 0 1 0 1 RPL41 chr12:56510583 5'GT 56510583 Upstream 84bp
chr12 56527596 56527596 1 + G A rs112882931 56527593 + 56527573 56527613 41 GTGGAATTGGGGAGTCTCCTCTCGACCAGATCCCCCGTCAG GTGGAATTGGGGAGTCTCCTCTCAACCAGATCCCCCGTCAG < 41bp 1 0.794120199110845 1 0.876954555511475 experiment 0.411759601778309 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56527593 chr12:56527596 nonsynonymous SNV 0.973 0 24 hm5C_associated_SNPs_9875 0 0 1 0 2 ESYT1 chr12:56527565 3'AG 56527565 Downstream 32bp
chr12 56527596 56527596 1 + G A rs112882931 56527593 + 56527573 56527613 41 GTGGAATTGGGGAGTCTCCTCTCGACCAGATCCCCCGTCAG GTGGAATTGGGGAGTCTCCTCTCAACCAGATCCCCCGTCAG < 41bp 1 0.794120199110845 1 0.876954555511475 experiment 0.411759601778309 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56527593 chr12:56527596 nonsynonymous SNV 0.973 0 24 hm5C_associated_SNPs_9875 0 0 1 0 2 ESYT1 chr12:56527657 5'GT 56527657 Upstream 62bp
chr12 56532009 56532009 1 + C A rs35075600 56531999 + 56531979 56532019 41 GAGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCG GAGGATGTCCCATCTGGCCGCCTGCACTTGAGCCTGGAGCG < 41bp 1 0.0563052461410771 1 0.483076691627502 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56531999 chr12:56532009 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_9876 0 0 1 0 2 ESYT1 chr12:56531967 3'AG 56531967 Downstream 43bp
chr12 56532009 56532009 1 + C A rs35075600 56531999 + 56531979 56532019 41 GAGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCG GAGGATGTCCCATCTGGCCGCCTGCACTTGAGCCTGGAGCG < 41bp 1 0.0563052461410771 1 0.483076691627502 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56531999 chr12:56532009 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_9876 0 0 1 0 2 ESYT1 chr12:56532056 5'GT 56532056 Upstream 48bp
chr12 56532009 56532009 1 + C A rs35075600 56532000 + 56531980 56532020 41 AGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCGT AGGATGTCCCATCTGGCCGCCTGCACTTGAGCCTGGAGCGT < 41bp 1 0.534913622734176 1 0.511815190315247 experiment 0.930172754531648 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532000 chr12:56532009 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_9877 0 0 1 0 2 ESYT1 chr12:56531967 3'AG 56531967 Downstream 43bp
chr12 56532009 56532009 1 + C A rs35075600 56532000 + 56531980 56532020 41 AGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCGT AGGATGTCCCATCTGGCCGCCTGCACTTGAGCCTGGAGCGT < 41bp 1 0.534913622734176 1 0.511815190315247 experiment 0.930172754531648 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532000 chr12:56532009 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_9877 0 0 1 0 2 ESYT1 chr12:56532056 5'GT 56532056 Upstream 48bp
chr12 56554111 56554111 1 + G A rs75503023 56554126 + 56554106 56554146 41 TAAGAGGTGAACTGCGCTTTCTCAGAGAAAGCAGCCATATG TAAGAAGTGAACTGCGCTTTCTCAGAGAAAGCAGCCATATG < 41bp 1 0.59714729288718 1 0.126215815544128 experiment 0.80570541422564 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYL6 ENSG00000092841 CDS Human protein_coding chr12:56554126 chr12:56554111 nonsynonymous SNV 0.854 1 6 hm5C_associated_SNPs_9878 0 0 1 0 1 MYL6 chr12:56554027 3'AG 56554027 Downstream 85bp
chr12 56862381 56862381 1 + G A rs148180043 56862382 + 56862362 56862402 41 ATCCAAGGCGCAAGATGGCGCTGCTTTTTGCACGTTCTTTG ATCCAAGGCGCAAGATGGCACTGCTTTTTGCACGTTCTTTG < 41bp 1 0.565978888691708 1 0.0600553750991821 experiment 0.868042222616585 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPRYD4 ENSG00000176422 CDS Human protein_coding chr12:56862382 chr12:56862381 synonymous SNV . 0 20 hm5C_associated_SNPs_9885 0 0 1 0 1 SPRYD4 chr12:56862460 5'GT 56862460 Upstream 80bp
chr12 57167939 57167939 1 + G A rs141210914 57167934 + 57167914 57167954 41 CTACTCAGTGGGTGAAGGAGCATGTGGGGGACAGAGGTATG CTACTCAGTGGGTGAAGGAGCATGTAGGGGACAGAGGTATG < 41bp 1 0.425882962098266 1 0.266766548156738 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSD17B6 ENSG00000025423 CDS Human protein_coding chr12:57167934 chr12:57167939 synonymous SNV . 0 26 hm5C_associated_SNPs_9886 0 0 1 0 1 HSD17B6 chr12:57167949 5'GT 57167949 Upstream 11bp
chr12 57548466 57548466 1 + C T rs1800137 57548481 + 57548461 57548501 41 CAGACCATCATCCAGGGCATCCTGGTGAGGGAGCTACTGTC CAGACTATCATCCAGGGCATCCTGGTGAGGGAGCTACTGTC < 41bp 1 0.0734835564532244 1 0.127378731966019 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57548481 chr12:57548466 synonymous SNV . 0 6 hm5C_associated_SNPs_9887 0 0 1 0 1 LRP1 chr12:57548484 5'GT 57548484 Upstream 19bp
chr12 57560825 57560825 1 + G A rs78054559 57560805 + 57560785 57560825 41 TGGATGACGACTGTGGGGACCGCTCTGATGAGTCTGCTTCG TGGATGACGACTGTGGGGACCGCTCTGATGAGTCTGCTTCA < 41bp 1 0.0516741604073532 1 0.283891916275024 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57560805 chr12:57560825 synonymous SNV . 0 41 hm5C_associated_SNPs_9888 0 0 1 0 1 LRP1 chr12:57560829 5'GT 57560829 Upstream 5bp
chr12 57571249 57571249 1 + C T rs2228187 57571257 + 57571237 57571277 41 CAGCCTGCCCCGCATTGAGGCAGCCTCCATGAGTGGGGCTG CAGCCTGCCCCGTATTGAGGCAGCCTCCATGAGTGGGGCTG < 41bp 1 0.119876417912573 1 0.411263763904572 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57571257 chr12:57571249 synonymous SNV . 0 13 hm5C_associated_SNPs_9889 0 0 1 0 1 LRP1 chr12:57571210 3'AG 57571210 Downstream 40bp
chr12 57588469 57588469 1 + C T rs182309785 57588474 + 57588454 57588494 41 TGAACATGGCGAGGACGAGACCCACTGCAGTGAGTGACCAC TGAACATGGCGAGGATGAGACCCACTGCAGTGAGTGACCAC < 41bp 1 0.0385292183671054 1 0.0379864275455475 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57588474 chr12:57588469 synonymous SNV . 0 16 hm5C_associated_SNPs_9890 0 0 1 0 1 LRP1 chr12:57588482 5'GT 57588482 Upstream 14bp
chr12 57597282 57597282 1 + C T rs2228192 57597276 + 57597256 57597296 41 GACGCCGACTGCATGGACGGCAGCGACGAGGAGGCCTGCGG GACGCCGACTGCATGGACGGCAGCGATGAGGAGGCCTGCGG < 41bp 1 0.261580763882412 1 0.21911346912384 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57597276 chr12:57597282 synonymous SNV . 0 27 hm5C_associated_SNPs_9891 0 0 1 0 1 LRP1 chr12:57597304 5'GT 57597304 Upstream 23bp
chr12 57627860 57627860 1 + G A rs202118297 57627865 + 57627845 57627885 41 TTTATAGATGAAGGGGTCAACATTGGCTTAGAGGTGAAGAG TTTATAGATGAAGGGATCAACATTGGCTTAGAGGTGAAGAG < 41bp 1 0.245839057723613 1 0.0968706607818604 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57627865 chr12:57627860 nonsynonymous SNV 0.992 1 16 hm5C_associated_SNPs_9901 0 0 1 0 2 SHMT2 chr12:57627786 3'AG 57627786 Downstream 75bp
chr12 57627860 57627860 1 + G A rs202118297 57627865 + 57627845 57627885 41 TTTATAGATGAAGGGGTCAACATTGGCTTAGAGGTGAAGAG TTTATAGATGAAGGGATCAACATTGGCTTAGAGGTGAAGAG < 41bp 1 0.245839057723613 1 0.0968706607818604 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57627865 chr12:57627860 nonsynonymous SNV 0.992 1 16 hm5C_associated_SNPs_9901 0 0 1 0 2 SHMT2 chr12:57627893 5'GT 57627893 Upstream 34bp
chr12 57911160 57911160 1 - G A rs697221 57911153 - 57911133 57911173 41 TGCCTTTCTCCTTCGGGACACTGTCCAGCTGGGAGCTGGAA TGCCTTTCTCCTTTGGGACACTGTCCAGCTGGGAGCTGGAA < 41bp 1 0.221038544330934 1 0.0971768498420715 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDIT3 ENSG00000175197 CDS Human protein_coding chr12:57911153 chr12:57911160 synonymous SNV 0.981 0 14 hm5C_associated_SNPs_9902 0 0 1 0 2 DDIT3 chr12:57911207 3'AG 57911207 Downstream 48bp
chr12 57911160 57911160 1 - G A rs697221 57911153 - 57911133 57911173 41 TGCCTTTCTCCTTCGGGACACTGTCCAGCTGGGAGCTGGAA TGCCTTTCTCCTTTGGGACACTGTCCAGCTGGGAGCTGGAA < 41bp 1 0.221038544330934 1 0.0971768498420715 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDIT3 ENSG00000175197 CDS Human protein_coding chr12:57911153 chr12:57911160 synonymous SNV 0.981 0 14 hm5C_associated_SNPs_9902 0 0 1 0 2 DDIT3 chr12:57911221 3'AG 57911221 Downstream 62bp
chr12 57922962 57922962 1 + C G rs200717548 57922978 + 57922958 57922998 41 CCTCCCCGGGCCCGCCCTGGCCGTCCTGCCAAAAACAAGAG CCTCGCCGGGCCCGCCCTGGCCGTCCTGCCAAAAACAAGAG < 41bp 1 0.0791054984128211 1 0.177037507295609 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57922978 chr12:57922962 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_9908 0 0 1 0 1 MBD6 chr12:57922943 3'AG 57922943 Downstream 20bp
chr12 58109707 58109707 1 + T G rs73125477 58109718 + 58109698 58109738 41 CTGTCACCCTTCCCTACAGCCTGAGGAGTACATGGCCTACG CTGTCACCCGTCCCTACAGCCTGAGGAGTACATGGCCTACG < 41bp 1 0.730833545243041 1 0.486068278551102 experiment 0.538332909513919 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OS9 ENSG00000135506 CDS Human protein_coding chr12:58109718 chr12:58109707 synonymous SNV . 0 10 hm5C_associated_SNPs_9909 0 0 1 0 1 OS9 chr12:58109753 5'GT 58109753 Upstream 47bp
chr12 58174038 58174038 1 + G A rs113423250 58174050 + 58174030 58174070 41 TCTCTCAGGGGGGGATGTTACCATCACTGACCTGCCCCTGG TCTCTCAGAGGGGGATGTTACCATCACTGACCTGCCCCTGG < 41bp 1 0.265283564283998 1 0.18127378821373 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EEF1AKMT3 ENSG00000123427 CDS Human protein_coding chr12:58174050 chr12:58174038 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_9910 0 0 0 0 1 EEF1AKMT3 chr12:58174038 3'AG 58174038 Downstream 1bp
chr12 58345627 58345627 1 + T C rs150828681 58345642 + 58345622 58345662 41 CATTGTCGTGCCCATGTCGACTGGTTCACCAACATCAGACA CATTGCCGTGCCCATGTCGACTGGTTCACCAACATCAGACA < 41bp 1 0.755236456894129 1 0.237153917551041 experiment 0.489527086211743 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP23 ENSG00000166896 CDS Human protein_coding chr12:58345642 chr12:58345627 synonymous SNV . 0 6 hm5C_associated_SNPs_9912 0 0 0 0 2 ATP23 chr12:58345541 3'AG 58345541 Downstream 87bp
chr12 58345627 58345627 1 + T C rs150828681 58345642 + 58345622 58345662 41 CATTGTCGTGCCCATGTCGACTGGTTCACCAACATCAGACA CATTGCCGTGCCCATGTCGACTGGTTCACCAACATCAGACA < 41bp 1 0.755236456894129 1 0.237153917551041 experiment 0.489527086211743 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP23 ENSG00000166896 CDS Human protein_coding chr12:58345642 chr12:58345627 synonymous SNV . 0 6 hm5C_associated_SNPs_9912 0 0 0 0 2 ATP23 chr12:58345678 5'GT 58345678 Upstream 52bp
chr12 62784650 62784650 1 + T C rs75305174 62784645 + 62784625 62784665 41 ATTTTTGATTTTACTTAAGCCGATATGTCAAAATATCTACT ATTTTTGATTTTACTTAAGCCGATACGTCAAAATATCTACT < 41bp 1 0.121143205995221 1 0.0360323786735535 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient USP15 ENSG00000135655 CDS Human protein_coding chr12:62784645 chr12:62784650 synonymous SNV . 0 26 hm5C_associated_SNPs_9913 0 0 1 0 1 USP15 chr12:62784644 3'AG 62784644 Downstream 7bp
chr12 62931441 62931441 1 + G A rs79202632 62931443 + 62931423 62931463 41 CTTGGCGCATTGCCATGGGGCTGTTCTTGGAACATCATGGC CTTGGCGCATTGCCATGGAGCTGTTCTTGGAACATCATGGC < 41bp 1 0.179007884611098 1 0.045130580663681 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62931443 chr12:62931441 synonymous SNV . 0 19 hm5C_associated_SNPs_9915 0 0 1 0 2 MON2 chr12:62931382 3'AG 62931382 Downstream 60bp
chr12 62931441 62931441 1 + G A rs79202632 62931443 + 62931423 62931463 41 CTTGGCGCATTGCCATGGGGCTGTTCTTGGAACATCATGGC CTTGGCGCATTGCCATGGAGCTGTTCTTGGAACATCATGGC < 41bp 1 0.179007884611098 1 0.045130580663681 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62931443 chr12:62931441 synonymous SNV . 0 19 hm5C_associated_SNPs_9915 0 0 1 0 2 MON2 chr12:62931486 5'GT 62931486 Upstream 46bp
chr12 62938748 62938748 1 + G T rs140799300 62938730 + 62938710 62938750 41 ATGGGGAGCAGAAGCTTTAACTTCTCTTATTAAAGCAGGAT ATGGGGAGCAGAAGCTTTAACTTCTCTTATTAAAGCAGTAT < 41bp 1 0.179687585533014 1 0.186669111251831 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62938730 chr12:62938748 nonsynonymous SNV 0.994 2 39 hm5C_associated_SNPs_9916 0 0 1 0 2 MON2 chr12:62938678 3'AG 62938678 Downstream 71bp
chr12 62938748 62938748 1 + G T rs140799300 62938730 + 62938710 62938750 41 ATGGGGAGCAGAAGCTTTAACTTCTCTTATTAAAGCAGGAT ATGGGGAGCAGAAGCTTTAACTTCTCTTATTAAAGCAGTAT < 41bp 1 0.179687585533014 1 0.186669111251831 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62938730 chr12:62938748 nonsynonymous SNV 0.994 2 39 hm5C_associated_SNPs_9916 0 0 1 0 2 MON2 chr12:62938788 5'GT 62938788 Upstream 41bp
chr12 62946739 62946739 1 + A C rs147472788 62946733 + 62946713 62946753 41 TAAATAAGGAAGAGGCAGCACAGCAAAAGCAGGCAGAAGAG TAAATAAGGAAGAGGCAGCACAGCAACAGCAGGCAGAAGAG < 41bp 1 0.651930638883683 1 0.675869166851044 experiment 0.696138722232635 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62946733 chr12:62946739 nonsynonymous SNV 0.999 1 27 hm5C_associated_SNPs_9917 0 0 0 0 1 MON2 chr12:62946661 3'AG 62946661 Downstream 79bp
chr12 62946748 62946748 1 + G A rs148114740 62946733 + 62946713 62946753 41 TAAATAAGGAAGAGGCAGCACAGCAAAAGCAGGCAGAAGAG TAAATAAGGAAGAGGCAGCACAGCAAAAGCAGGCAAAAGAG < 41bp 1 0.666796418555428 1 0.713551878929138 experiment 0.666407162889144 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62946733 chr12:62946748 nonsynonymous SNV 0.999 1 36 hm5C_associated_SNPs_9918 0 0 0 0 1 MON2 chr12:62946661 3'AG 62946661 Downstream 88bp
chr12 65225988 65225988 1 + C T rs181148724 65225974 + 65225954 65225994 41 GGGTTGTGTTGAAGCGGGTGCTGCTGGCCTATGCCCGATGG GGGTTGTGTTGAAGCGGGTGCTGCTGGCCTATGCTCGATGG < 41bp 1 0.541928169065829 1 0.0846125781536102 experiment 0.916143661868343 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBC1D30 ENSG00000111490 CDS Human protein_coding chr12:65225974 chr12:65225988 synonymous SNV . 0 35 hm5C_associated_SNPs_9926 0 0 0 0 2 TBC1D30 chr12:65225899 3'AG 65225899 Downstream 90bp
chr12 65225988 65225988 1 + C T rs181148724 65225974 + 65225954 65225994 41 GGGTTGTGTTGAAGCGGGTGCTGCTGGCCTATGCCCGATGG GGGTTGTGTTGAAGCGGGTGCTGCTGGCCTATGCTCGATGG < 41bp 1 0.541928169065829 1 0.0846125781536102 experiment 0.916143661868343 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBC1D30 ENSG00000111490 CDS Human protein_coding chr12:65225974 chr12:65225988 synonymous SNV . 0 35 hm5C_associated_SNPs_9926 0 0 0 0 2 TBC1D30 chr12:65226084 5'GT 65226084 Upstream 97bp
chr12 69082805 69082805 1 + G A rs2259588 69082818 + 69082798 69082838 41 CTGCACGGAAACAGAGTGCTCAGAAAAGAGTTTTACGTATC CTGCACGAAAACAGAGTGCTCAGAAAAGAGTTTTACGTATC < 41bp 1 0.716881843225928 1 0.705155551433563 experiment 0.566236313548143 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69082818 chr12:69082805 synonymous SNV . 0 8 hm5C_associated_SNPs_9928 0 0 1 0 2 NUP107 chr12:69082742 3'AG 69082742 Downstream 64bp
chr12 69082805 69082805 1 + G A rs2259588 69082818 + 69082798 69082838 41 CTGCACGGAAACAGAGTGCTCAGAAAAGAGTTTTACGTATC CTGCACGAAAACAGAGTGCTCAGAAAAGAGTTTTACGTATC < 41bp 1 0.716881843225928 1 0.705155551433563 experiment 0.566236313548143 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69082818 chr12:69082805 synonymous SNV . 0 8 hm5C_associated_SNPs_9928 0 0 1 0 2 NUP107 chr12:69082833 5'GT 69082833 Upstream 29bp
chr12 69633393 69633393 1 + C A rs367612178 69633378 + 69633358 69633398 41 GCTGCTGCTGCCGCGGCGGGCAGACCTGCAGGAGGCGGCGG GCTGCTGCTGCCGCGGCGGGCAGACCTGCAGGAGGAGGCGG < 41bp 1 0.772854739818054 1 0.767518758773804 experiment 0.454290520363891 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPSF6 ENSG00000111605 UTR5 Human protein_coding chr12:69633378 chr12:69633393 . . 0 36 hm5C_associated_SNPs_9929 0 0 1 0 1 CPSF6 chr12:69633486 5'GT 69633486 Upstream 94bp
chr12 69633393 69633393 1 + C A rs367612178 69633411 + 69633391 69633431 41 GGCGGCGGCGGCGGCGGCGGCCGAGGCTGAAGGAAGATGGC GGAGGCGGCGGCGGCGGCGGCCGAGGCTGAAGGAAGATGGC < 41bp 1 0.733926785924397 1 0.861478388309479 experiment 0.532146428151206 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CPSF6 ENSG00000111605 UTR5 Human protein_coding chr12:69633411 chr12:69633393 . . 0 3 hm5C_associated_SNPs_9930 0 0 1 0 1 CPSF6 chr12:69633486 5'GT 69633486 Upstream 94bp
chr12 69633416 69633416 1 + G A rs200448686 69633411 + 69633391 69633431 41 GGCGGCGGCGGCGGCGGCGGCCGAGGCTGAAGGAAGATGGC GGCGGCGGCGGCGGCGGCGGCCGAGACTGAAGGAAGATGGC < 41bp 1 0.694005333769332 1 0.847369015216827 experiment 0.611989332461335 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CPSF6 ENSG00000111605 UTR5 Human protein_coding chr12:69633411 chr12:69633416 . . 0 26 hm5C_associated_SNPs_9931 0 0 1 0 1 CPSF6 chr12:69633486 5'GT 69633486 Upstream 71bp
chr12 93881368 93881368 1 + A G rs146944959 93881384 + 93881364 93881404 41 AGGAAGGACCTATGATAGAACAACTTAGCAAAATGTTCTTT AGGAGGGACCTATGATAGAACAACTTAGCAAAATGTTCTTT < 41bp 1 0.55195725946939 1 0.15004974603653 experiment 0.896085481061219 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRPL42 ENSG00000198015 CDS Human protein_coding chr12:93881384 chr12:93881368 synonymous SNV . 0 5 hm5C_associated_SNPs_9956 0 0 1 1 2 MRPL42 chr12:93881273 3'AG 93881273 Downstream 96bp
chr12 93881368 93881368 1 + A G rs146944959 93881384 + 93881364 93881404 41 AGGAAGGACCTATGATAGAACAACTTAGCAAAATGTTCTTT AGGAGGGACCTATGATAGAACAACTTAGCAAAATGTTCTTT < 41bp 1 0.55195725946939 1 0.15004974603653 experiment 0.896085481061219 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRPL42 ENSG00000198015 CDS Human protein_coding chr12:93881384 chr12:93881368 synonymous SNV . 0 5 hm5C_associated_SNPs_9956 0 0 1 1 2 MRPL42 chr12:93881436 5'GT 93881436 Upstream 69bp
chr12 93964379 93964379 1 + C T rs539395189 93964396 + 93964376 93964416 41 CCCCGTGGCAGGCCAAGGGCCAAGGATCGCTATCCTTCCCT CCCTGTGGCAGGCCAAGGGCCAAGGATCGCTATCCTTCCCT < 41bp 1 0.775418776359128 1 0.656058609485626 experiment 0.449162447281744 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SOCS2-AS1 ENSG00000246985 ncRNA_intronic Human processed_transcript chr12:93964396 chr12:93964379 . . 0 4 hm5C_associated_SNPs_9958 0 0 1 0 1 SOCS2-AS1 chr12:93964441 5'GT 93964441 Upstream 63bp
chr12 95681554 95681554 1 + C G rs12424550 95681551 + 95681531 95681571 41 AAATTAAAGTTGATTCAGCCCCACGTTCAAGCAAGCAACAA AAATTAAAGTTGATTCAGCCCCAGGTTCAAGCAAGCAACAA < 41bp 1 0.614465895274001 1 0.117347598075867 experiment 0.771068209451997 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VEZT ENSG00000028203 CDS Human protein_coding chr12:95681551 chr12:95681554 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_9960 0 0 0 1 1 VEZT chr12:95681633 5'GT 95681633 Upstream 80bp
chr12 95693943 95693943 1 + G A rs17344738 95693942 + 95693922 95693962 41 TCTTTTTTTTTATTTGAAGCCGTGTTGAAATCCTTGTCTCC TCTTTTTTTTTATTTGAAGCCATGTTGAAATCCTTGTCTCC < 41bp 1 0.207395760687704 1 0.408587992191315 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VEZT ENSG00000028203 CDS Human protein_coding chr12:95693942 chr12:95693943 nonsynonymous SNV 0.963 2 22 hm5C_associated_SNPs_9961 0 0 1 3 1 VEZT chr12:95693941 3'AG 95693941 Downstream 3bp
chr12 98941390 98941390 1 + G A rs144913822 98941402 + 98941382 98941422 41 GCAGGCCGGCCATTAGAACTCAGTGATTTCAGGATGGAGGA GCAGGCCGACCATTAGAACTCAGTGATTTCAGGATGGAGGA < 41bp 1 0.658522337902689 1 0.412046551704407 experiment 0.682955324194621 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMPO ENSG00000120802 CDS Human protein_coding chr12:98941402 chr12:98941390 synonymous SNV . 0 9 hm5C_associated_SNPs_9963 1 0 1 1 1 TMPO chr12:98941351 3'AG 98941351 Downstream 40bp
chr12 101674902 101674902 1 + A G rs78240090 101674915 + 101674895 101674935 41 TTCTTACATTTGCTGAACGACTGGGGAATGTTAATATTGAT TTCTTACGTTTGCTGAACGACTGGGGAATGTTAATATTGAT < 41bp 1 0.380270322492329 1 0.17942413687706 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101674915 chr12:101674902 synonymous SNV . 0 8 hm5C_associated_SNPs_9977 0 0 1 0 2 UTP20 chr12:101674894 3'AG 101674894 Downstream 9bp
chr12 101674902 101674902 1 + A G rs78240090 101674915 + 101674895 101674935 41 TTCTTACATTTGCTGAACGACTGGGGAATGTTAATATTGAT TTCTTACGTTTGCTGAACGACTGGGGAATGTTAATATTGAT < 41bp 1 0.380270322492329 1 0.17942413687706 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101674915 chr12:101674902 synonymous SNV . 0 8 hm5C_associated_SNPs_9977 0 0 1 0 2 UTP20 chr12:101674974 5'GT 101674974 Upstream 73bp
chr12 101674913 101674913 1 + G A rs151017457 101674915 + 101674895 101674935 41 TTCTTACATTTGCTGAACGACTGGGGAATGTTAATATTGAT TTCTTACATTTGCTGAACAACTGGGGAATGTTAATATTGAT < 41bp 1 0.412128028160402 1 0.294387340545654 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101674915 chr12:101674913 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_9978 0 0 1 0 2 UTP20 chr12:101674894 3'AG 101674894 Downstream 20bp
chr12 101674913 101674913 1 + G A rs151017457 101674915 + 101674895 101674935 41 TTCTTACATTTGCTGAACGACTGGGGAATGTTAATATTGAT TTCTTACATTTGCTGAACAACTGGGGAATGTTAATATTGAT < 41bp 1 0.412128028160402 1 0.294387340545654 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101674915 chr12:101674913 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_9978 0 0 1 0 2 UTP20 chr12:101674974 5'GT 101674974 Upstream 62bp
chr12 101680177 101680177 1 + G A rs139691544 101680176 + 101680156 101680196 41 GTTTTTTTTGACTATCACCTCGATCCTGGAGACTCAGGACA GTTTTTTTTGACTATCACCTCAATCCTGGAGACTCAGGACA < 41bp 1 0.0779099786049237 1 0.14086377620697 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101680176 chr12:101680177 synonymous SNV . 0 22 hm5C_associated_SNPs_9979 0 0 1 0 1 UTP20 chr12:101680099 3'AG 101680099 Downstream 79bp
chr12 102517804 102517804 1 + G A rs2036771 102517803 + 102517783 102517823 41 GGCATTGCAGCTTTCTATGGCGGAGAACAACAAACAGGTTG GGCATTGCAGCTTTCTATGGCAGAGAACAACAAACAGGTTG < 41bp 1 0.658786995227101 1 0.389066278934479 experiment 0.682426009545799 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PARPBP ENSG00000185480 CDS Human protein_coding chr12:102517803 chr12:102517804 synonymous SNV . 0 22 hm5C_associated_SNPs_9986 0 0 1 0 1 PARPBP chr12:102517819 5'GT 102517819 Upstream 16bp
chr12 104327979 104327979 1 + C G rs6615 104327970 + 104327950 104327990 41 ATTGTCACTTCAAAACACAACAACGATACCCAGCACATCTG ATTGTCACTTCAAAACACAACAACGATACGCAGCACATCTG < 41bp 1 0.45334790961176 1 0.158398598432541 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104327970 chr12:104327979 synonymous SNV . 0 30 hm5C_associated_SNPs_9989 0 0 1 0 1 HSP90B1 chr12:104328065 5'GT 104328065 Upstream 87bp
chr12 104378664 104378664 1 + G A rs140299122 104378675 + 104378655 104378695 41 CGTTCAAGAGGTGCAATATACATTTGACCTACAGCTTGCCC CGTTCAAGAAGTGCAATATACATTTGACCTACAGCTTGCCC < 41bp 1 0.198443027114784 1 0.0417838096618652 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TDG ENSG00000139372 CDS Human protein_coding chr12:104378675 chr12:104378664 synonymous SNV . 0 10 hm5C_associated_SNPs_9990 0 0 1 0 1 TDG chr12:104378698 5'GT 104378698 Upstream 35bp
chr12 104720157 104720157 1 + A G rs34368560 104720169 + 104720149 104720189 41 GCTTGCACAAGAAAAATTGGCTTAGAAACCGTAGGGGTGAA GCTTGCACGAGAAAAATTGGCTTAGAAACCGTAGGGGTGAA < 41bp 1 0.247154327146668 1 0.0528908371925354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TXNRD1 ENSG00000198431 CDS Human protein_coding chr12:104720169 chr12:104720157 synonymous SNV . 0 9 hm5C_associated_SNPs_9991 0 0 1 0 2 TXNRD1 chr12:104720125 3'AG 104720125 Downstream 33bp
chr12 104720157 104720157 1 + A G rs34368560 104720169 + 104720149 104720189 41 GCTTGCACAAGAAAAATTGGCTTAGAAACCGTAGGGGTGAA GCTTGCACGAGAAAAATTGGCTTAGAAACCGTAGGGGTGAA < 41bp 1 0.247154327146668 1 0.0528908371925354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TXNRD1 ENSG00000198431 CDS Human protein_coding chr12:104720169 chr12:104720157 synonymous SNV . 0 9 hm5C_associated_SNPs_9991 0 0 1 0 2 TXNRD1 chr12:104720201 5'GT 104720201 Upstream 45bp
chr12 104720178 104720178 1 + C T rs542165610 104720169 + 104720149 104720189 41 GCTTGCACAAGAAAAATTGGCTTAGAAACCGTAGGGGTGAA GCTTGCACAAGAAAAATTGGCTTAGAAACTGTAGGGGTGAA < 41bp 1 0.168634035016367 1 0.0445185899734497 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TXNRD1 ENSG00000198431 CDS Human protein_coding chr12:104720169 chr12:104720178 synonymous SNV . 0 30 hm5C_associated_SNPs_9992 0 0 1 0 2 TXNRD1 chr12:104720125 3'AG 104720125 Downstream 54bp
chr12 104720178 104720178 1 + C T rs542165610 104720169 + 104720149 104720189 41 GCTTGCACAAGAAAAATTGGCTTAGAAACCGTAGGGGTGAA GCTTGCACAAGAAAAATTGGCTTAGAAACTGTAGGGGTGAA < 41bp 1 0.168634035016367 1 0.0445185899734497 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TXNRD1 ENSG00000198431 CDS Human protein_coding chr12:104720169 chr12:104720178 synonymous SNV . 0 30 hm5C_associated_SNPs_9992 0 0 1 0 2 TXNRD1 chr12:104720201 5'GT 104720201 Upstream 24bp
chr12 105519861 105519861 1 + C T rs200763691 105519876 + 105519856 105519896 41 ATTTGCACATAGTATTCGGTCAATTTTTGCAAATGTAGAAG ATTTGTACATAGTATTCGGTCAATTTTTGCAAATGTAGAAG < 41bp 1 0.169987134787714 1 0.118732005357742 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519876 chr12:105519861 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_9994 1 0 1 0 2 WASHC4 chr12:105519782 3'AG 105519782 Downstream 80bp
chr12 105519861 105519861 1 + C T rs200763691 105519876 + 105519856 105519896 41 ATTTGCACATAGTATTCGGTCAATTTTTGCAAATGTAGAAG ATTTGTACATAGTATTCGGTCAATTTTTGCAAATGTAGAAG < 41bp 1 0.169987134787714 1 0.118732005357742 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519876 chr12:105519861 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_9994 1 0 1 0 2 WASHC4 chr12:105519905 5'GT 105519905 Upstream 45bp
chr12 105519873 105519873 1 + G A rs35267264 105519876 + 105519856 105519896 41 ATTTGCACATAGTATTCGGTCAATTTTTGCAAATGTAGAAG ATTTGCACATAGTATTCAGTCAATTTTTGCAAATGTAGAAG < 41bp 1 0.234329230900091 1 0.162818759679794 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519876 chr12:105519873 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_9995 2 0 1 0 2 WASHC4 chr12:105519782 3'AG 105519782 Downstream 92bp
chr12 105519873 105519873 1 + G A rs35267264 105519876 + 105519856 105519896 41 ATTTGCACATAGTATTCGGTCAATTTTTGCAAATGTAGAAG ATTTGCACATAGTATTCAGTCAATTTTTGCAAATGTAGAAG < 41bp 1 0.234329230900091 1 0.162818759679794 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519876 chr12:105519873 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_9995 2 0 1 0 2 WASHC4 chr12:105519905 5'GT 105519905 Upstream 33bp
chr12 105519873 105519873 1 + G A rs35267264 105519885 + 105519865 105519905 41 TAGTATTCGGTCAATTTTTGCAAATGTAGAAGCCAAACTTG TAGTATTCAGTCAATTTTTGCAAATGTAGAAGCCAAACTTG < 41bp 1 0.274004295337448 1 0.282398879528046 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519885 chr12:105519873 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_9996 2 0 1 0 2 WASHC4 chr12:105519782 3'AG 105519782 Downstream 92bp
chr12 105519873 105519873 1 + G A rs35267264 105519885 + 105519865 105519905 41 TAGTATTCGGTCAATTTTTGCAAATGTAGAAGCCAAACTTG TAGTATTCAGTCAATTTTTGCAAATGTAGAAGCCAAACTTG < 41bp 1 0.274004295337448 1 0.282398879528046 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519885 chr12:105519873 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_9996 2 0 1 0 2 WASHC4 chr12:105519905 5'GT 105519905 Upstream 33bp
chr12 108086634 108086634 1 + C T rs77478466 108086614 + 108086594 108086634 41 CTGAGACTCTTGGTGAATCTCTCTTGGGTCTTACGGTCTAC CTGAGACTCTTGGTGAATCTCTCTTGGGTCTTACGGTCTAT < 41bp 1 0.490148403875699 1 0.210632681846619 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PWP1 ENSG00000136045 CDS Human protein_coding chr12:108086614 chr12:108086634 synonymous SNV . 0 41 hm5C_associated_SNPs_10001 0 0 1 0 2 PWP1 chr12:108086591 3'AG 108086591 Downstream 44bp
chr12 108086634 108086634 1 + C T rs77478466 108086614 + 108086594 108086634 41 CTGAGACTCTTGGTGAATCTCTCTTGGGTCTTACGGTCTAC CTGAGACTCTTGGTGAATCTCTCTTGGGTCTTACGGTCTAT < 41bp 1 0.490148403875699 1 0.210632681846619 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PWP1 ENSG00000136045 CDS Human protein_coding chr12:108086614 chr12:108086634 synonymous SNV . 0 41 hm5C_associated_SNPs_10001 0 0 1 0 2 PWP1 chr12:108086676 5'GT 108086676 Upstream 43bp
chr12 108086634 108086634 1 + C T rs77478466 108086616 + 108086596 108086636 41 GAGACTCTTGGTGAATCTCTCTTGGGTCTTACGGTCTACGG GAGACTCTTGGTGAATCTCTCTTGGGTCTTACGGTCTATGG < 41bp 1 0.717360707669518 1 0.412979602813721 experiment 0.565278584660965 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PWP1 ENSG00000136045 CDS Human protein_coding chr12:108086616 chr12:108086634 synonymous SNV . 0 39 hm5C_associated_SNPs_10002 0 0 1 0 2 PWP1 chr12:108086591 3'AG 108086591 Downstream 44bp
chr12 108086634 108086634 1 + C T rs77478466 108086616 + 108086596 108086636 41 GAGACTCTTGGTGAATCTCTCTTGGGTCTTACGGTCTACGG GAGACTCTTGGTGAATCTCTCTTGGGTCTTACGGTCTATGG < 41bp 1 0.717360707669518 1 0.412979602813721 experiment 0.565278584660965 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PWP1 ENSG00000136045 CDS Human protein_coding chr12:108086616 chr12:108086634 synonymous SNV . 0 39 hm5C_associated_SNPs_10002 0 0 1 0 2 PWP1 chr12:108086676 5'GT 108086676 Upstream 43bp
chr12 108910962 108910962 1 + C T rs2303634 108910952 + 108910932 108910972 41 CAGGAGCAAACCGGACAGGGCGCAGCATGCCGCCACCAAGT CAGGAGCAAACCGGACAGGGCGCAGCATGCTGCCACCAAGT < 41bp 1 0.493233234488245 1 0.301897019147873 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FICD ENSG00000198855 CDS Human protein_coding chr12:108910952 chr12:108910962 nonsynonymous SNV . 0 31 hm5C_associated_SNPs_10003 0 0 0 0 1 FICD chr12:108911050 5'GT 108911050 Upstream 89bp
chr12 109539760 109539760 1 + C A rs376918741 109539764 + 109539744 109539784 41 GACCTAATCAAGCTCACGGGCTCTGCTTTAGTGTTCAAAGG GACCTAATCAAGCTCAAGGGCTCTGCTTTAGTGTTCAAAGG < 41bp 1 0.311741747933699 1 0.22651219367981 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109539764 chr12:109539760 nonsynonymous SNV 0.856 4 17 hm5C_associated_SNPs_10004 0 0 1 0 2 UNG chr12:109539707 3'AG 109539707 Downstream 54bp
chr12 109539760 109539760 1 + C A rs376918741 109539764 + 109539744 109539784 41 GACCTAATCAAGCTCACGGGCTCTGCTTTAGTGTTCAAAGG GACCTAATCAAGCTCAAGGGCTCTGCTTTAGTGTTCAAAGG < 41bp 1 0.311741747933699 1 0.22651219367981 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109539764 chr12:109539760 nonsynonymous SNV 0.856 4 17 hm5C_associated_SNPs_10004 0 0 1 0 2 UNG chr12:109539804 5'GT 109539804 Upstream 45bp
chr12 109547675 109547675 1 + G T rs576935575 109547670 + 109547650 109547690 41 TACAGACGGCTCATCCCTCCCCTTTGTCAGTGTATAGAGGG TACAGACGGCTCATCCCTCCCCTTTTTCAGTGTATAGAGGG < 41bp 1 0.0372063891330166 1 0.0481332838535309 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109547670 chr12:109547675 nonsynonymous SNV 0.790 1 26 hm5C_associated_SNPs_10005 0 0 1 0 1 UNG chr12:109547634 3'AG 109547634 Downstream 42bp
chr12 110456175 110456175 1 + A G rs2302689 110456173 + 110456153 110456193 41 CCTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATC CCTTGGTTTCTAGAATATGCCCGAATGATGTCTGTCGCATC < 41bp 1 0.553909594172367 1 0.38287228345871 experiment 0.892180811655266 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110456173 chr12:110456175 synonymous SNV . 0 23 hm5C_associated_SNPs_10008 0 0 0 0 1 ANKRD13A chr12:110456150 3'AG 110456150 Downstream 26bp
chr12 110456175 110456175 1 + A G rs2302689 110456174 + 110456154 110456194 41 CTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATCT CTTGGTTTCTAGAATATGCCCGAATGATGTCTGTCGCATCT < 41bp 1 0.403970208386793 1 0.137713670730591 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110456174 chr12:110456175 synonymous SNV . 0 22 hm5C_associated_SNPs_10009 0 0 0 0 1 ANKRD13A chr12:110456150 3'AG 110456150 Downstream 26bp
chr12 110474070 110474070 1 + T C rs2287174 110474069 + 110474049 110474089 41 ACATTTGTCTTTGCCAGGAACTTTCAGGACCAGCTTCGAAT ACATTTGTCTTTGCCAGGAACCTTCAGGACCAGCTTCGAAT < 41bp 1 0.0132239305707759 1 0.0408380031585693 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110474069 chr12:110474070 nonsynonymous SNV 0.986 0 22 hm5C_associated_SNPs_10010 0 0 1 0 2 ANKRD13A chr12:110474066 3'AG 110474066 Downstream 5bp
chr12 110474070 110474070 1 + T C rs2287174 110474069 + 110474049 110474089 41 ACATTTGTCTTTGCCAGGAACTTTCAGGACCAGCTTCGAAT ACATTTGTCTTTGCCAGGAACCTTCAGGACCAGCTTCGAAT < 41bp 1 0.0132239305707759 1 0.0408380031585693 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110474069 chr12:110474070 nonsynonymous SNV 0.986 0 22 hm5C_associated_SNPs_10010 0 0 1 0 2 ANKRD13A chr12:110474133 5'GT 110474133 Upstream 64bp
chr12 111744751 111744751 1 + G A rs200854950 111744768 + 111744748 111744788 41 CTCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACA CTCAGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACA < 41bp 1 0.257959047699659 1 0.0796433687210083 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744768 chr12:111744751 synonymous SNV . 0 4 hm5C_associated_SNPs_10013 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 27bp
chr12 111744751 111744751 1 + G A rs200854950 111744769 + 111744749 111744789 41 TCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAG TCAGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAG < 41bp 1 0.292466444051311 1 0.284753024578094 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744769 chr12:111744751 synonymous SNV . 0 3 hm5C_associated_SNPs_10014 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 27bp
chr12 111744770 111744770 1 + G A rs199624287 111744768 + 111744748 111744788 41 CTCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACA CTCGGGCCCTCGGCTGGAGGCCACGCTGGCCTCCAAGGACA < 41bp 1 0.172467293471746 1 0.0570217669010162 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744768 chr12:111744770 nonsynonymous SNV 0.186 1 23 hm5C_associated_SNPs_10015 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 46bp
chr12 111744770 111744770 1 + G A rs199624287 111744769 + 111744749 111744789 41 TCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAG TCGGGCCCTCGGCTGGAGGCCACGCTGGCCTCCAAGGACAG < 41bp 1 0.252381513902945 1 0.215933829545975 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744769 chr12:111744770 nonsynonymous SNV 0.186 1 22 hm5C_associated_SNPs_10016 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 46bp
chr12 111744770 111744770 1 + G A rs199624287 111744777 + 111744757 111744797 41 TCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCC TCGGCTGGAGGCCACGCTGGCCTCCAAGGACAGGGAGATCC < 41bp 1 0.025218229679735 1 0.0758098959922791 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744777 chr12:111744770 nonsynonymous SNV 0.186 1 14 hm5C_associated_SNPs_10017 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 46bp
chr12 111744770 111744770 1 + G A rs199624287 111744778 + 111744758 111744798 41 CGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCT CGGCTGGAGGCCACGCTGGCCTCCAAGGACAGGGAGATCCT < 41bp 1 0.477084518573207 1 0.970301032066345 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744778 chr12:111744770 nonsynonymous SNV 0.186 1 13 hm5C_associated_SNPs_10018 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 46bp
chr12 111744770 111744770 1 + G A rs199624287 111744780 + 111744760 111744800 41 GCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGC GCTGGAGGCCACGCTGGCCTCCAAGGACAGGGAGATCCTGC < 41bp 1 0.244266678491152 1 0.724150419235229 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744780 chr12:111744770 nonsynonymous SNV 0.186 1 11 hm5C_associated_SNPs_10019 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 46bp
chr12 111744770 111744770 1 + G A rs199624287 111744781 + 111744761 111744801 41 CTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGCG CTGGAGGCCACGCTGGCCTCCAAGGACAGGGAGATCCTGCG < 41bp 1 0.341889097185199 1 0.713708519935608 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744781 chr12:111744770 nonsynonymous SNV 0.186 1 10 hm5C_associated_SNPs_10020 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 46bp
chr12 111884608 111884608 1 + T A rs3184504 111884617 + 111884597 111884637 41 AGGAGGTCCGGTGGTGCACACGGCTTGAGATGCCTGACAAC AGGAGGTCCGGAGGTGCACACGGCTTGAGATGCCTGACAAC < 41bp 1 0.609088317979883 1 0.646842837333679 experiment 0.781823364040234 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH2B3 ENSG00000111252 CDS Human protein_coding chr12:111884617 chr12:111884608 nonsynonymous SNV 0.074 0 12 hm5C_associated_SNPs_10021 0 1 1 0 1 SH2B3 chr12:111884658 5'GT 111884658 Upstream 51bp
chr12 111884619 111884619 1 + G A rs143256866 111884617 + 111884597 111884637 41 AGGAGGTCCGGTGGTGCACACGGCTTGAGATGCCTGACAAC AGGAGGTCCGGTGGTGCACACGACTTGAGATGCCTGACAAC < 41bp 1 0.45257923397087 1 0.253947228193283 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH2B3 ENSG00000111252 CDS Human protein_coding chr12:111884617 chr12:111884619 synonymous SNV . 0 23 hm5C_associated_SNPs_10022 0 0 1 0 1 SH2B3 chr12:111884658 5'GT 111884658 Upstream 40bp
chr12 112130564 112130564 1 + A G rs77123766 112130547 + 112130527 112130567 41 GCTGTTTCCAGTCCCCCCGTCTCCAGTGGGTGTGGAGAACA GCTGTTTCCAGTCCCCCCGTCTCCAGTGGGTGTGGAGGACA < 41bp 1 0.766611487340283 1 0.981796979904175 experiment 0.466777025319434 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ACAD10 ENSG00000111271 CDS Human protein_coding chr12:112130547 chr12:112130564 synonymous SNV . 0 38 hm5C_associated_SNPs_10033 0 0 0 0 1 ACAD10 chr12:112130501 3'AG 112130501 Downstream 64bp
chr12 112229159 112229159 1 + C T rs543030829 112229155 + 112229135 112229175 41 ACATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATT ACATTGTGCCTGGATTTGGCCCCATGGCTGGGGCCGCCATT < 41bp 1 0.185851909233795 1 0.0331903994083405 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229155 chr12:112229159 nonsynonymous SNV 0.113 3 25 hm5C_associated_SNPs_10034 0 0 1 0 2 ALDH2 chr12:112229110 3'AG 112229110 Downstream 50bp
chr12 112229159 112229159 1 + C T rs543030829 112229155 + 112229135 112229175 41 ACATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATT ACATTGTGCCTGGATTTGGCCCCATGGCTGGGGCCGCCATT < 41bp 1 0.185851909233795 1 0.0331903994083405 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human protein_coding chr12:112229155 chr12:112229159 nonsynonymous SNV 0.113 3 25 hm5C_associated_SNPs_10034 0 0 1 0 2 ALDH2 chr12:112229223 5'GT 112229223 Upstream 65bp
chr12 112229159 112229159 1 + C T rs543030829 112229156 + 112229136 112229176 41 CATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTG CATTGTGCCTGGATTTGGCCCCATGGCTGGGGCCGCCATTG < 41bp 1 0.143849679632793 1 0.174940705299377 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229156 chr12:112229159 nonsynonymous SNV 0.113 3 24 hm5C_associated_SNPs_10035 0 0 1 0 2 ALDH2 chr12:112229110 3'AG 112229110 Downstream 50bp
chr12 112229159 112229159 1 + C T rs543030829 112229156 + 112229136 112229176 41 CATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTG CATTGTGCCTGGATTTGGCCCCATGGCTGGGGCCGCCATTG < 41bp 1 0.143849679632793 1 0.174940705299377 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human protein_coding chr12:112229156 chr12:112229159 nonsynonymous SNV 0.113 3 24 hm5C_associated_SNPs_10035 0 0 1 0 2 ALDH2 chr12:112229223 5'GT 112229223 Upstream 65bp
chr12 112229159 112229159 1 + C T rs543030829 112229157 + 112229137 112229177 41 ATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTGC ATTGTGCCTGGATTTGGCCCCATGGCTGGGGCCGCCATTGC < 41bp 1 0.488178352711689 1 0.2167147397995 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229157 chr12:112229159 nonsynonymous SNV 0.113 3 23 hm5C_associated_SNPs_10036 0 0 1 0 2 ALDH2 chr12:112229110 3'AG 112229110 Downstream 50bp
chr12 112229159 112229159 1 + C T rs543030829 112229157 + 112229137 112229177 41 ATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTGC ATTGTGCCTGGATTTGGCCCCATGGCTGGGGCCGCCATTGC < 41bp 1 0.488178352711689 1 0.2167147397995 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human protein_coding chr12:112229157 chr12:112229159 nonsynonymous SNV 0.113 3 23 hm5C_associated_SNPs_10036 0 0 1 0 2 ALDH2 chr12:112229223 5'GT 112229223 Upstream 65bp
chr12 112229159 112229159 1 + C T rs543030829 112229168 + 112229148 112229188 41 ATTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGG ATTTGGCCCCATGGCTGGGGCCGCCATTGCCTCCCATGAGG < 41bp 1 0.151190990082055 1 0.102367401123047 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229168 chr12:112229159 nonsynonymous SNV 0.113 3 12 hm5C_associated_SNPs_10037 0 0 1 0 2 ALDH2 chr12:112229110 3'AG 112229110 Downstream 50bp
chr12 112229159 112229159 1 + C T rs543030829 112229168 + 112229148 112229188 41 ATTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGG ATTTGGCCCCATGGCTGGGGCCGCCATTGCCTCCCATGAGG < 41bp 1 0.151190990082055 1 0.102367401123047 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human protein_coding chr12:112229168 chr12:112229159 nonsynonymous SNV 0.113 3 12 hm5C_associated_SNPs_10037 0 0 1 0 2 ALDH2 chr12:112229223 5'GT 112229223 Upstream 65bp
chr12 112229159 112229159 1 + C T rs543030829 112229169 + 112229149 112229189 41 TTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGGA TTTGGCCCCATGGCTGGGGCCGCCATTGCCTCCCATGAGGA < 41bp 1 0.751234962561898 1 0.779237866401672 experiment 0.497530074876205 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229169 chr12:112229159 nonsynonymous SNV 0.113 3 11 hm5C_associated_SNPs_10038 0 0 1 0 2 ALDH2 chr12:112229110 3'AG 112229110 Downstream 50bp
chr12 112229159 112229159 1 + C T rs543030829 112229169 + 112229149 112229189 41 TTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGGA TTTGGCCCCATGGCTGGGGCCGCCATTGCCTCCCATGAGGA < 41bp 1 0.751234962561898 1 0.779237866401672 experiment 0.497530074876205 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human protein_coding chr12:112229169 chr12:112229159 nonsynonymous SNV 0.113 3 11 hm5C_associated_SNPs_10038 0 0 1 0 2 ALDH2 chr12:112229223 5'GT 112229223 Upstream 65bp
chr12 112579920 112579920 1 + A G rs61743643 112579938 + 112579918 112579958 41 GAATAGAGGCCAACAGCCCCCCAAAGAGGGTGGTGAAGAGA GAGTAGAGGCCAACAGCCCCCCAAAGAGGGTGGTGAAGAGA < 41bp 1 0.292087766993461 1 0.429946810007095 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112579938 chr12:112579920 nonsynonymous SNV 0.895 0 3 hm5C_associated_SNPs_10045 0 0 1 1 1 TRAFD1 chr12:112579893 3'AG 112579893 Downstream 28bp
chr12 112579945 112579945 1 + G A rs61740854 112579938 + 112579918 112579958 41 GAATAGAGGCCAACAGCCCCCCAAAGAGGGTGGTGAAGAGA GAATAGAGGCCAACAGCCCCCCAAAGAAGGTGGTGAAGAGA < 41bp 1 0.264796631311866 1 0.351034134626389 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112579938 chr12:112579945 nonsynonymous SNV . 0 28 hm5C_associated_SNPs_10046 0 0 0 1 1 TRAFD1 chr12:112579893 3'AG 112579893 Downstream 53bp
chr12 112915755 112915755 1 + G A rs535800148 112915765 + 112915745 112915785 41 GACTTTTGGCGGATGGTGTTCCAAGAAAACTCCCGAGTGAT GACTTTTGGCAGATGGTGTTCCAAGAAAACTCCCGAGTGAT < 41bp 1 0.251271901122231 1 0.241689234972 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915765 chr12:112915755 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_10050 1 0 1 0 2 PTPN11 chr12:112915661 3'AG 112915661 Downstream 95bp
chr12 112915755 112915755 1 + G A rs535800148 112915765 + 112915745 112915785 41 GACTTTTGGCGGATGGTGTTCCAAGAAAACTCCCGAGTGAT GACTTTTGGCAGATGGTGTTCCAAGAAAACTCCCGAGTGAT < 41bp 1 0.251271901122231 1 0.241689234972 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915765 chr12:112915755 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_10050 1 0 1 0 2 PTPN11 chr12:112915819 5'GT 112915819 Upstream 65bp
chr12 112915755 112915755 1 + G A rs535800148 112915766 + 112915746 112915786 41 ACTTTTGGCGGATGGTGTTCCAAGAAAACTCCCGAGTGATT ACTTTTGGCAGATGGTGTTCCAAGAAAACTCCCGAGTGATT < 41bp 1 0.753075212518123 1 0.306508600711823 experiment 0.493849574963755 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915766 chr12:112915755 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_10051 1 0 1 0 2 PTPN11 chr12:112915661 3'AG 112915661 Downstream 95bp
chr12 112915755 112915755 1 + G A rs535800148 112915766 + 112915746 112915786 41 ACTTTTGGCGGATGGTGTTCCAAGAAAACTCCCGAGTGATT ACTTTTGGCAGATGGTGTTCCAAGAAAACTCCCGAGTGATT < 41bp 1 0.753075212518123 1 0.306508600711823 experiment 0.493849574963755 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915766 chr12:112915755 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_10051 1 0 1 0 2 PTPN11 chr12:112915819 5'GT 112915819 Upstream 65bp
chr12 113864999 113864999 1 + C T rs139219594 113864992 + 113864972 113865012 41 GGCACAACCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTC GGCACAACCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTC < 41bp 1 0.245249095574013 1 0.188811302185059 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDSL ENSG00000139410 UTR5 Human protein_coding chr12:113864992 chr12:113864999 . . 0 28 hm5C_associated_SNPs_10061 0 0 0 0 1 SDSL chr12:113864935 3'AG 113864935 Downstream 65bp
chr12 113864999 113864999 1 + C T rs139219594 113864995 + 113864975 113865015 41 ACAACCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAG ACAACCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAG < 41bp 1 0.0517960297728534 1 0.0274234712123871 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDSL ENSG00000139410 UTR5 Human protein_coding chr12:113864995 chr12:113864999 . . 0 25 hm5C_associated_SNPs_10062 0 0 0 0 1 SDSL chr12:113864935 3'AG 113864935 Downstream 65bp
chr12 113864999 113864999 1 + C T rs139219594 113864996 + 113864976 113865016 41 CAACCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGT CAACCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGT < 41bp 1 0.158383473068965 1 0.0478968322277069 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDSL ENSG00000139410 UTR5 Human protein_coding chr12:113864996 chr12:113864999 . . 0 24 hm5C_associated_SNPs_10063 0 0 0 0 1 SDSL chr12:113864935 3'AG 113864935 Downstream 65bp
chr12 113864999 113864999 1 + C T rs139219594 113864998 + 113864978 113865018 41 ACCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGA ACCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGTGA < 41bp 1 0.275538834772532 1 0.0654022991657257 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDSL ENSG00000139410 UTR5 Human protein_coding chr12:113864998 chr12:113864999 . . 0 22 hm5C_associated_SNPs_10064 0 0 0 0 1 SDSL chr12:113864935 3'AG 113864935 Downstream 65bp
chr12 113864999 113864999 1 + C T rs139219594 113865001 + 113864981 113865021 41 TTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTC TTGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGTGATTC < 41bp 1 0.029486996535287 1 0.0331837236881256 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDSL ENSG00000139410 UTR5 Human protein_coding chr12:113865001 chr12:113864999 . . 0 19 hm5C_associated_SNPs_10065 0 0 0 0 1 SDSL chr12:113864935 3'AG 113864935 Downstream 65bp
chr12 113864999 113864999 1 + C T rs139219594 113865002 + 113864982 113865022 41 TGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCT TGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGTGATTCT < 41bp 1 0.119729900406669 1 0.331430792808533 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDSL ENSG00000139410 UTR5 Human protein_coding chr12:113865002 chr12:113864999 . . 0 18 hm5C_associated_SNPs_10066 0 0 0 0 1 SDSL chr12:113864935 3'AG 113864935 Downstream 65bp
chr12 113864999 113864999 1 + C T rs139219594 113865004 + 113864984 113865024 41 GCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCC GCTCACTGCAACCTCTGCCTCCCAGGTTCAAGTGATTCTCC < 41bp 1 0.382296138471533 1 0.235004723072052 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDSL ENSG00000139410 UTR5 Human protein_coding chr12:113865004 chr12:113864999 . . 0 16 hm5C_associated_SNPs_10067 0 0 0 0 1 SDSL chr12:113864935 3'AG 113864935 Downstream 65bp
chr12 113864999 113864999 1 + C T rs139219594 113865005 + 113864985 113865025 41 CTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCT CTCACTGCAACCTCTGCCTCCCAGGTTCAAGTGATTCTCCT < 41bp 1 0.261418458083575 1 0.243060976266861 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDSL ENSG00000139410 UTR5 Human protein_coding chr12:113865005 chr12:113864999 . . 0 15 hm5C_associated_SNPs_10068 0 0 0 0 1 SDSL chr12:113864935 3'AG 113864935 Downstream 65bp
chr12 113864999 113864999 1 + C T rs139219594 113865006 + 113864986 113865026 41 TCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCTG TCACTGCAACCTCTGCCTCCCAGGTTCAAGTGATTCTCCTG < 41bp 1 0.442509529298028 1 0.612951517105103 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDSL ENSG00000139410 UTR5 Human protein_coding chr12:113865006 chr12:113864999 . . 0 14 hm5C_associated_SNPs_10069 0 0 0 0 1 SDSL chr12:113864935 3'AG 113864935 Downstream 65bp
chr12 113867023 113867023 1 + C T rs143423751 113867026 + 113867006 113867046 41 CTGGGCATTCCTGCCACCATCGTGCTCCCCGAGAGCACCTC CTGGGCATTCCTGCCACTATCGTGCTCCCCGAGAGCACCTC < 41bp 1 0.608506402640971 1 0.393528819084167 experiment 0.782987194718059 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SDSL ENSG00000139410 CDS Human protein_coding chr12:113867026 chr12:113867023 synonymous SNV . 0 18 hm5C_associated_SNPs_10070 0 0 0 0 2 SDSL chr12:113866965 3'AG 113866965 Downstream 59bp
chr12 113867023 113867023 1 + C T rs143423751 113867026 + 113867006 113867046 41 CTGGGCATTCCTGCCACCATCGTGCTCCCCGAGAGCACCTC CTGGGCATTCCTGCCACTATCGTGCTCCCCGAGAGCACCTC < 41bp 1 0.608506402640971 1 0.393528819084167 experiment 0.782987194718059 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SDSL ENSG00000139410 CDS Human protein_coding chr12:113867026 chr12:113867023 synonymous SNV . 0 18 hm5C_associated_SNPs_10070 0 0 0 0 2 SDSL chr12:113867104 5'GT 113867104 Upstream 82bp
chr12 118465820 118465820 1 + T C rs5745873 118465804 + 118465784 118465824 41 GGGTTGGCACTGCATGATATCCTGACAGAGATACACTTGTT GGGTTGGCACTGCATGATATCCTGACAGAGATACACCTGTT < 41bp 1 0.539534791261351 1 0.114154487848282 experiment 0.920930417477299 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RFC5 ENSG00000111445 CDS Human protein_coding chr12:118465804 chr12:118465820 synonymous SNV . 0 37 hm5C_associated_SNPs_10073 0 0 1 0 3 RFC5 chr12:118465758 3'AG 118465758 Downstream 63bp
chr12 118465820 118465820 1 + T C rs5745873 118465804 + 118465784 118465824 41 GGGTTGGCACTGCATGATATCCTGACAGAGATACACTTGTT GGGTTGGCACTGCATGATATCCTGACAGAGATACACCTGTT < 41bp 1 0.539534791261351 1 0.114154487848282 experiment 0.920930417477299 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RFC5 ENSG00000111445 CDS Human protein_coding chr12:118465804 chr12:118465820 synonymous SNV . 0 37 hm5C_associated_SNPs_10073 0 0 1 0 3 RFC5 chr12:118465767 3'AG 118465767 Downstream 54bp
chr12 118465820 118465820 1 + T C rs5745873 118465804 + 118465784 118465824 41 GGGTTGGCACTGCATGATATCCTGACAGAGATACACTTGTT GGGTTGGCACTGCATGATATCCTGACAGAGATACACCTGTT < 41bp 1 0.539534791261351 1 0.114154487848282 experiment 0.920930417477299 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RFC5 ENSG00000111445 CDS Human protein_coding chr12:118465804 chr12:118465820 synonymous SNV . 0 37 hm5C_associated_SNPs_10073 0 0 1 0 3 RFC5 chr12:118465835 5'GT 118465835 Upstream 16bp
chr12 121660787 121660787 1 + T C rs25643 121660807 + 121660787 121660827 41 TGTCAAGACGTGTGAGGTGGCGGCCTGGTGCCCGGTGGAGG CGTCAAGACGTGTGAGGTGGCGGCCTGGTGCCCGGTGGAGG < 41bp 1 0.583589497207267 1 0.579563081264496 experiment 0.832821005585466 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660807 chr12:121660787 synonymous SNV . 0 1 hm5C_associated_SNPs_10080 0 0 0 0 2 P2RX4 chr12:121660750 3'AG 121660750 Downstream 38bp
chr12 121660787 121660787 1 + T C rs25643 121660807 + 121660787 121660827 41 TGTCAAGACGTGTGAGGTGGCGGCCTGGTGCCCGGTGGAGG CGTCAAGACGTGTGAGGTGGCGGCCTGGTGCCCGGTGGAGG < 41bp 1 0.583589497207267 1 0.579563081264496 experiment 0.832821005585466 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660807 chr12:121660787 synonymous SNV . 0 1 hm5C_associated_SNPs_10080 0 0 0 0 2 P2RX4 chr12:121660846 5'GT 121660846 Upstream 60bp
chr12 121660804 121660804 1 + T C rs141459292 121660807 + 121660787 121660827 41 TGTCAAGACGTGTGAGGTGGCGGCCTGGTGCCCGGTGGAGG TGTCAAGACGTGTGAGGCGGCGGCCTGGTGCCCGGTGGAGG < 41bp 1 0.485082420683449 1 0.495354324579239 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660807 chr12:121660804 nonsynonymous SNV 0.935 4 18 hm5C_associated_SNPs_10081 0 0 1 0 2 P2RX4 chr12:121660750 3'AG 121660750 Downstream 55bp
chr12 121660804 121660804 1 + T C rs141459292 121660807 + 121660787 121660827 41 TGTCAAGACGTGTGAGGTGGCGGCCTGGTGCCCGGTGGAGG TGTCAAGACGTGTGAGGCGGCGGCCTGGTGCCCGGTGGAGG < 41bp 1 0.485082420683449 1 0.495354324579239 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660807 chr12:121660804 nonsynonymous SNV 0.935 4 18 hm5C_associated_SNPs_10081 0 0 1 0 2 P2RX4 chr12:121660846 5'GT 121660846 Upstream 43bp
chr12 121660820 121660820 1 + G A rs188674773 121660807 + 121660787 121660827 41 TGTCAAGACGTGTGAGGTGGCGGCCTGGTGCCCGGTGGAGG TGTCAAGACGTGTGAGGTGGCGGCCTGGTGCCCAGTGGAGG < 41bp 1 0.540982364034117 1 0.537108600139618 experiment 0.918035271931766 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660807 chr12:121660820 synonymous SNV . 0 34 hm5C_associated_SNPs_10082 0 0 1 0 2 P2RX4 chr12:121660750 3'AG 121660750 Downstream 71bp
chr12 121660820 121660820 1 + G A rs188674773 121660807 + 121660787 121660827 41 TGTCAAGACGTGTGAGGTGGCGGCCTGGTGCCCGGTGGAGG TGTCAAGACGTGTGAGGTGGCGGCCTGGTGCCCAGTGGAGG < 41bp 1 0.540982364034117 1 0.537108600139618 experiment 0.918035271931766 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660807 chr12:121660820 synonymous SNV . 0 34 hm5C_associated_SNPs_10082 0 0 1 0 2 P2RX4 chr12:121660846 5'GT 121660846 Upstream 27bp
chr12 123028739 123028739 1 + A G rs61751320 123028737 + 123028717 123028757 41 AATCAAGTCCAGTTTTATTTCTACTGAAAATTATCATACTC AATCAAGTCCAGTTTTATTTCTGCTGAAAATTATCATACTC < 41bp 1 0.407907558407711 1 0.583759665489197 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123028737 chr12:123028739 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_10102 0 0 1 0 2 KNTC1 chr12:123028706 3'AG 123028706 Downstream 34bp
chr12 123028739 123028739 1 + A G rs61751320 123028737 + 123028717 123028757 41 AATCAAGTCCAGTTTTATTTCTACTGAAAATTATCATACTC AATCAAGTCCAGTTTTATTTCTGCTGAAAATTATCATACTC < 41bp 1 0.407907558407711 1 0.583759665489197 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123028737 chr12:123028739 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_10102 0 0 1 0 2 KNTC1 chr12:123028816 5'GT 123028816 Upstream 78bp
chr12 123462962 123462962 1 + G A rs60641861 123462972 + 123462952 123462992 41 CCACATTCAGGCCAACAGACCATCCCTCCTTCCACAGAGGA CCACATTCAGACCAACAGACCATCCCTCCTTCCACAGAGGA < 41bp 1 0.0308016317659386 1 0.0766871273517609 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGFOD2 ENSG00000256028 ncRNA_exonic Human processed_transcript chr12:123462972 chr12:123462962 . . 0 11 hm5C_associated_SNPs_10131 0 0 1 0 1 OGFOD2 chr12:123462872 3'AG 123462872 Downstream 91bp
chr12 124144395 124144395 1 + A C rs1051793 124144415 + 124144395 124144435 41 AGTTCATGTTGACTACAGGGCTGCTTGCTTCTGTCATCGAA CGTTCATGTTGACTACAGGGCTGCTTGCTTCTGTCATCGAA < 41bp 1 0.364105177022496 1 0.0457051396369934 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2H3 ENSG00000111358 CDS Human protein_coding chr12:124144415 chr12:124144395 nonsynonymous SNV . 0 1 hm5C_associated_SNPs_10132 0 1 1 0 2 GTF2H3 chr12:124144342 3'AG 124144342 Downstream 54bp
chr12 124144395 124144395 1 + A C rs1051793 124144415 + 124144395 124144435 41 AGTTCATGTTGACTACAGGGCTGCTTGCTTCTGTCATCGAA CGTTCATGTTGACTACAGGGCTGCTTGCTTCTGTCATCGAA < 41bp 1 0.364105177022496 1 0.0457051396369934 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2H3 ENSG00000111358 CDS Human protein_coding chr12:124144415 chr12:124144395 nonsynonymous SNV . 0 1 hm5C_associated_SNPs_10132 0 1 1 0 2 GTF2H3 chr12:124144477 5'GT 124144477 Upstream 83bp
chr12 124210782 124210782 1 + T A rs1399961 124210800 + 124210780 124210820 41 AGTGATTCTTTGTTGGATTACAGCTGTATGCAGAGGCTGGG AGAGATTCTTTGTTGGATTACAGCTGTATGCAGAGGCTGGG < 41bp 1 0.55726200405751 1 0.18140697479248 experiment 0.885475991884981 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124210800 chr12:124210782 nonsynonymous SNV 0.112 1 3 hm5C_associated_SNPs_10133 0 0 1 0 2 ATP6V0A2 chr12:124210744 3'AG 124210744 Downstream 39bp
chr12 124210782 124210782 1 + T A rs1399961 124210800 + 124210780 124210820 41 AGTGATTCTTTGTTGGATTACAGCTGTATGCAGAGGCTGGG AGAGATTCTTTGTTGGATTACAGCTGTATGCAGAGGCTGGG < 41bp 1 0.55726200405751 1 0.18140697479248 experiment 0.885475991884981 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124210800 chr12:124210782 nonsynonymous SNV 0.112 1 3 hm5C_associated_SNPs_10133 0 0 1 0 2 ATP6V0A2 chr12:124210832 5'GT 124210832 Upstream 51bp
chr12 125603223 125603223 1 + C T rs138543814 125603220 + 125603200 125603240 41 TGTGGAACTGGATGGTGTCCCTTCTGGCCACAGGAGCGGCC TGTGGAACTGGATGGTGTCCCTTTTGGCCACAGGAGCGGCC < 41bp 1 0.154496453845377 1 0.0614384710788727 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AACS ENSG00000081760 CDS Human protein_coding chr12:125603220 chr12:125603223 synonymous SNV . 0 24 hm5C_associated_SNPs_10191 0 0 1 0 1 AACS chr12:125603187 3'AG 125603187 Downstream 37bp
chr12 131488789 131488789 1 + G A rs73473278 131488788 + 131488768 131488808 41 TTCCTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCA TTCCTCCCATTACCGCTTCCCAGCCCACGGGCAGAGCTTCA < 41bp 1 0.188535365904316 1 0.381116330623627 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488788 chr12:131488789 synonymous SNV . 0 22 hm5C_associated_SNPs_10194 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 53bp
chr12 131488789 131488789 1 + G A rs73473278 131488791 + 131488771 131488811 41 CTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCC CTCCCATTACCGCTTCCCAGCCCACGGGCAGAGCTTCATCC < 41bp 1 0.0627866144322483 1 0.104543805122375 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488791 chr12:131488789 synonymous SNV . 0 19 hm5C_associated_SNPs_10195 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 53bp
chr12 131488789 131488789 1 + G A rs73473278 131488792 + 131488772 131488812 41 TCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCA TCCCATTACCGCTTCCCAGCCCACGGGCAGAGCTTCATCCA < 41bp 1 0.290569267075388 1 0.664961218833923 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488792 chr12:131488789 synonymous SNV . 0 18 hm5C_associated_SNPs_10196 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 53bp
chr12 131488789 131488789 1 + G A rs73473278 131488793 + 131488773 131488813 41 CCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAG CCCATTACCGCTTCCCAGCCCACGGGCAGAGCTTCATCCAG < 41bp 1 0.71465886434251 1 0.844064116477966 experiment 0.57068227131498 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488793 chr12:131488789 synonymous SNV . 0 17 hm5C_associated_SNPs_10197 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 53bp
chr12 131488789 131488789 1 + G A rs73473278 131488795 + 131488775 131488815 41 CATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAGAT CATTACCGCTTCCCAGCCCACGGGCAGAGCTTCATCCAGAT < 41bp 1 0.522529904403855 1 0.931143760681152 experiment 0.95494019119229 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488795 chr12:131488789 synonymous SNV . 0 15 hm5C_associated_SNPs_10198 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 53bp
chr12 131488789 131488789 1 + G A rs73473278 131488799 + 131488779 131488819 41 ACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAGATCCCC ACCGCTTCCCAGCCCACGGGCAGAGCTTCATCCAGATCCCC < 41bp 1 0.301140948495818 1 0.260250568389893 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488799 chr12:131488789 synonymous SNV . 0 11 hm5C_associated_SNPs_10199 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 53bp
chr12 132325352 132325352 1 + C T rs201315531 132325361 + 132325341 132325381 41 CACCACACCGCCGGGGACACCCACTTTGACGATGACGAGGC CACCACACCGCTGGGGACACCCACTTTGACGATGACGAGGC < 41bp 1 0.185383834227492 1 0.205716460943222 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132325361 chr12:132325352 synonymous SNV . 0 12 hm5C_associated_SNPs_10208 0 0 0 0 1 MMP17 chr12:132325401 5'GT 132325401 Upstream 50bp
chr12 132325376 132325376 1 + C T rs34515698 132325361 + 132325341 132325381 41 CACCACACCGCCGGGGACACCCACTTTGACGATGACGAGGC CACCACACCGCCGGGGACACCCACTTTGACGATGATGAGGC < 41bp 1 0.184517673549786 1 0.131160825490952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132325361 chr12:132325376 synonymous SNV . 0 36 hm5C_associated_SNPs_10209 0 0 1 0 1 MMP17 chr12:132325401 5'GT 132325401 Upstream 26bp
chr12 132326242 132326242 1 + C T rs17854024 132326257 + 132326237 132326277 41 GTGGCCGCTGCACACTCCATCATGCGGCCGTACTACCAGGG GTGGCTGCTGCACACTCCATCATGCGGCCGTACTACCAGGG < 41bp 1 0.269495254248334 1 0.710737228393555 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132326257 chr12:132326242 synonymous SNV . 0 6 hm5C_associated_SNPs_10210 0 0 0 0 1 MMP17 chr12:132326169 3'AG 132326169 Downstream 74bp
chr12 132328603 132328603 1 + C G rs141838854 132328586 + 132328566 132328606 41 CGGCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCCCCA CGGCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCGCCA < 41bp 1 0.322891072575636 1 0.278598189353943 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132328586 chr12:132328603 synonymous SNV . 0 38 hm5C_associated_SNPs_10211 0 0 0 0 2 MMP17 chr12:132328542 3'AG 132328542 Downstream 62bp
chr12 132328603 132328603 1 + C G rs141838854 132328586 + 132328566 132328606 41 CGGCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCCCCA CGGCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCGCCA < 41bp 1 0.322891072575636 1 0.278598189353943 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132328586 chr12:132328603 synonymous SNV . 0 38 hm5C_associated_SNPs_10211 0 0 0 0 2 MMP17 chr12:132328626 5'GT 132328626 Upstream 24bp
chr12 132328603 132328603 1 + C G rs141838854 132328588 + 132328568 132328608 41 GCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCCCCAGA GCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCGCCAGA < 41bp 1 0.219231928565159 1 0.122638314962387 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132328588 chr12:132328603 synonymous SNV . 0 36 hm5C_associated_SNPs_10212 0 0 0 0 2 MMP17 chr12:132328542 3'AG 132328542 Downstream 62bp
chr12 132328603 132328603 1 + C G rs141838854 132328588 + 132328568 132328608 41 GCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCCCCAGA GCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCGCCAGA < 41bp 1 0.219231928565159 1 0.122638314962387 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132328588 chr12:132328603 synonymous SNV . 0 36 hm5C_associated_SNPs_10212 0 0 0 0 2 MMP17 chr12:132328626 5'GT 132328626 Upstream 24bp
chr12 132464251 132464251 1 + G A rs147304028 132464239 + 132464219 132464259 41 TTTTTCATCTTTTTTCCCAGCAGCAAGCCCTCGCAGGGAGC TTTTTCATCTTTTTTCCCAGCAGCAAGCCCTCACAGGGAGC < 41bp 1 0.224727944902723 1 0.28991025686264 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132464239 chr12:132464251 nonsynonymous SNV 0.433 1 33 hm5C_associated_SNPs_10219 0 0 1 0 3 EP400 chr12:132464239 3'AG 132464239 Downstream 13bp
chr12 132464251 132464251 1 + G A rs147304028 132464239 + 132464219 132464259 41 TTTTTCATCTTTTTTCCCAGCAGCAAGCCCTCGCAGGGAGC TTTTTCATCTTTTTTCCCAGCAGCAAGCCCTCACAGGGAGC < 41bp 1 0.224727944902723 1 0.28991025686264 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132464239 chr12:132464251 nonsynonymous SNV 0.433 1 33 hm5C_associated_SNPs_10219 0 0 1 0 3 EP400 chr12:132464242 3'AG 132464242 Downstream 10bp
chr12 132464251 132464251 1 + G A rs147304028 132464239 + 132464219 132464259 41 TTTTTCATCTTTTTTCCCAGCAGCAAGCCCTCGCAGGGAGC TTTTTCATCTTTTTTCCCAGCAGCAAGCCCTCACAGGGAGC < 41bp 1 0.224727944902723 1 0.28991025686264 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132464239 chr12:132464251 nonsynonymous SNV 0.433 1 33 hm5C_associated_SNPs_10219 0 0 1 0 3 EP400 chr12:132464338 5'GT 132464338 Upstream 88bp
chr12 132546675 132546675 1 + C T rs143376217 132546658 + 132546638 132546678 41 CTGTTTGCCTTTTCTAGACGCCGGGAGGCTCTGCTCCCGCC CTGTTTGCCTTTTCTAGACGCCGGGAGGCTCTGCTCCTGCC < 41bp 1 0.267206716265095 1 0.809038519859314 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546658 chr12:132546675 synonymous SNV . 0 38 hm5C_associated_SNPs_10220 0 0 0 0 1 EP400 chr12:132546655 3'AG 132546655 Downstream 21bp
chr12 132546675 132546675 1 + C T rs143376217 132546659 + 132546639 132546679 41 TGTTTGCCTTTTCTAGACGCCGGGAGGCTCTGCTCCCGCCC TGTTTGCCTTTTCTAGACGCCGGGAGGCTCTGCTCCTGCCC < 41bp 1 0.69139186088227 1 0.886226415634155 experiment 0.617216278235459 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546659 chr12:132546675 synonymous SNV . 0 37 hm5C_associated_SNPs_10221 0 0 0 0 1 EP400 chr12:132546655 3'AG 132546655 Downstream 21bp
chr12 132588997 132588997 1 + T A rs540126078 132588993 + 132588973 132589013 41 GCAGAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCC GCAGAATGTGCGTGCAGGTGCCCCAGGCCCTGGGCTGGGCC < 41bp 1 0.578184546071218 1 0.210799872875214 experiment 0.843630907857564 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588993 chr12:132588997 synonymous SNV . 0 25 hm5C_associated_SNPs_10226 0 0 1 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 75bp
chr12 132588997 132588997 1 + T A rs540126078 132588994 + 132588974 132589014 41 CAGAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCT CAGAATGTGCGTGCAGGTGCCCCAGGCCCTGGGCTGGGCCT < 41bp 1 0.342111284468457 1 0.171661794185638 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588994 chr12:132588997 synonymous SNV . 0 24 hm5C_associated_SNPs_10227 0 0 1 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 75bp
chr12 132588997 132588997 1 + T A rs540126078 132588995 + 132588975 132589015 41 AGAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTC AGAATGTGCGTGCAGGTGCCCCAGGCCCTGGGCTGGGCCTC < 41bp 1 0.504902680208996 1 0.505067229270935 experiment 0.990194639582009 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588995 chr12:132588997 synonymous SNV . 0 23 hm5C_associated_SNPs_10228 0 0 1 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 75bp
chr12 132588997 132588997 1 + T A rs540126078 132588996 + 132588976 132589016 41 GAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCT GAATGTGCGTGCAGGTGCCCCAGGCCCTGGGCTGGGCCTCT < 41bp 1 0.545569888352382 1 0.745689511299133 experiment 0.908860223295235 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588996 chr12:132588997 synonymous SNV . 0 22 hm5C_associated_SNPs_10229 0 0 1 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 75bp
chr12 132588997 132588997 1 + T A rs540126078 132589000 + 132588980 132589020 41 GTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAG GTGCGTGCAGGTGCCCCAGGCCCTGGGCTGGGCCTCTGCAG < 41bp 1 0.285628210252528 1 0.213911533355713 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132589000 chr12:132588997 synonymous SNV . 0 18 hm5C_associated_SNPs_10230 0 0 1 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 75bp
chr12 132588997 132588997 1 + T A rs540126078 132589001 + 132588981 132589021 41 TGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAGC TGCGTGCAGGTGCCCCAGGCCCTGGGCTGGGCCTCTGCAGC < 41bp 1 0.314669882322105 1 0.338723659515381 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132589001 chr12:132588997 synonymous SNV . 0 17 hm5C_associated_SNPs_10231 0 0 1 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 75bp
chr12 132588997 132588997 1 + T A rs540126078 132589007 + 132588987 132589027 41 CAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAGCAGCAGC CAGGTGCCCCAGGCCCTGGGCTGGGCCTCTGCAGCAGCAGC < 41bp 1 0.587461156632765 1 0.604847311973572 experiment 0.825077686734471 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132589007 chr12:132588997 synonymous SNV . 0 11 hm5C_associated_SNPs_10232 0 0 1 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 75bp
chr12 133146732 133146732 1 + G A rs3751314 133146730 + 133146710 133146750 41 ACACCCCGCAGCCGCCACCCCCGCAGCCCCGCGGCCTGCTC ACACCCCGCAGCCGCCACCCCCACAGCCCCGCGGCCTGCTC < 41bp 1 0.516181010122821 1 0.483176916837692 experiment 0.967637979754358 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBRSL1 ENSG00000112787 CDS Human protein_coding chr12:133146730 chr12:133146732 synonymous SNV . 0 23 hm5C_associated_SNPs_10234 0 0 0 0 1 FBRSL1 chr12:133146827 5'GT 133146827 Upstream 96bp
chr13 21750806 21750806 1 + A G rs373866368 21750813 + 21750793 21750833 41 GTGCGCTTACGCCACGGCGTCTGCTGGCGGCCGCGGAGACG GTGCGCTTACGCCGCGGCGTCTGCTGGCGGCCGCGGAGACG < 41bp 1 0.645518789555483 1 0.198293656110764 experiment 0.708962420889034 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRPL57 ENSG00000173141 UTR5 Human protein_coding chr13:21750813 chr13:21750806 . . 0 14 hm5C_associated_SNPs_10242 0 0 1 0 1 MRPL57 chr13:21750856 5'GT 21750856 Upstream 51bp
chr13 21750806 21750806 1 + A G rs373866368 21750820 + 21750800 21750840 41 TACGCCACGGCGTCTGCTGGCGGCCGCGGAGACGCAGAGTC TACGCCGCGGCGTCTGCTGGCGGCCGCGGAGACGCAGAGTC < 41bp 1 0.693763305543397 1 0.662363052368164 experiment 0.612473388913206 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MRPL57 ENSG00000173141 UTR5 Human protein_coding chr13:21750820 chr13:21750806 . . 0 7 hm5C_associated_SNPs_10243 0 0 1 0 1 MRPL57 chr13:21750856 5'GT 21750856 Upstream 51bp
chr13 21750806 21750806 1 + A G rs373866368 21750824 + 21750804 21750844 41 CCACGGCGTCTGCTGGCGGCCGCGGAGACGCAGAGTCTTGA CCGCGGCGTCTGCTGGCGGCCGCGGAGACGCAGAGTCTTGA < 41bp 1 0.734586782438636 1 0.645645618438721 experiment 0.530826435122729 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRPL57 ENSG00000173141 UTR5 Human protein_coding chr13:21750824 chr13:21750806 . . 0 3 hm5C_associated_SNPs_10244 0 0 1 0 1 MRPL57 chr13:21750856 5'GT 21750856 Upstream 51bp
chr13 31903712 31903712 1 + C T rs372748811 31903694 + 31903674 31903714 41 CATCAAGTTCCCATATCGTTCCACAAACACTGGAACATCGA CATCAAGTTCCCATATCGTTCCACAAACACTGGAACATTGA < 41bp 1 0.348826130560319 1 0.135055005550385 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31903694 chr13:31903712 synonymous SNV . 0 39 hm5C_associated_SNPs_10255 0 0 0 0 1 B3GLCT chr13:31903638 3'AG 31903638 Downstream 75bp
chr13 42887253 42887253 1 + C G rs61755977 42887264 + 42887244 42887284 41 TTATCCTTTCCAACATCAGACAGGTTGGTCCAGTCTAGAAA TTATCCTTTGCAACATCAGACAGGTTGGTCCAGTCTAGAAA < 41bp 1 0.397803189957827 1 0.45147317647934 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKAP11 ENSG00000023516 CDS Human protein_coding chr13:42887264 chr13:42887253 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_10261 0 0 1 0 2 AKAP11 chr13:42887183 3'AG 42887183 Downstream 71bp
chr13 42887253 42887253 1 + C G rs61755977 42887264 + 42887244 42887284 41 TTATCCTTTCCAACATCAGACAGGTTGGTCCAGTCTAGAAA TTATCCTTTGCAACATCAGACAGGTTGGTCCAGTCTAGAAA < 41bp 1 0.397803189957827 1 0.45147317647934 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKAP11 ENSG00000023516 CDS Human protein_coding chr13:42887264 chr13:42887253 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_10261 0 0 1 0 2 AKAP11 chr13:42887266 5'GT 42887266 Upstream 14bp
chr13 42887255 42887255 1 + A G rs61735444 42887264 + 42887244 42887284 41 TTATCCTTTCCAACATCAGACAGGTTGGTCCAGTCTAGAAA TTATCCTTTCCGACATCAGACAGGTTGGTCCAGTCTAGAAA < 41bp 1 0.439581787927054 1 0.340641021728516 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKAP11 ENSG00000023516 CDS Human protein_coding chr13:42887264 chr13:42887255 synonymous SNV . 0 12 hm5C_associated_SNPs_10262 0 0 1 0 2 AKAP11 chr13:42887183 3'AG 42887183 Downstream 73bp
chr13 42887255 42887255 1 + A G rs61735444 42887264 + 42887244 42887284 41 TTATCCTTTCCAACATCAGACAGGTTGGTCCAGTCTAGAAA TTATCCTTTCCGACATCAGACAGGTTGGTCCAGTCTAGAAA < 41bp 1 0.439581787927054 1 0.340641021728516 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKAP11 ENSG00000023516 CDS Human protein_coding chr13:42887264 chr13:42887255 synonymous SNV . 0 12 hm5C_associated_SNPs_10262 0 0 1 0 2 AKAP11 chr13:42887266 5'GT 42887266 Upstream 12bp
chr13 77570078 77570078 1 + T G rs34481987 77570092 + 77570072 77570112 41 ATTAACTGGCAAGAACTACACAATGGAATGGTATGAACTTT ATTAACGGGCAAGAACTACACAATGGAATGGTATGAACTTT < 41bp 1 0.555996047298502 1 0.283549875020981 experiment 0.888007905402995 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CLN5 ENSG00000102805 CDS Human protein_coding chr13:77570092 chr13:77570078 synonymous SNV . 0 7 hm5C_associated_SNPs_10269 3 0 1 0 1 CLN5 chr13:77570037 3'AG 77570037 Downstream 42bp
chr13 93879770 93879770 1 + G T rs555690920 93879771 + 93879751 93879791 41 GCTGCTGCTCTCCCTCCCCGCCGGGGCGGATGTGAAGGCTC GCTGCTGCTCTCCCTCCCCTCCGGGGCGGATGTGAAGGCTC < 41bp 1 0.638758362848136 1 0.873500227928162 experiment 0.722483274303728 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPC6 ENSG00000183098 CDS Human protein_coding chr13:93879771 chr13:93879770 nonsynonymous SNV 0.997 0 20 hm5C_associated_SNPs_10271 0 0 1 0 1 GPC6 chr13:93879869 5'GT 93879869 Upstream 100bp
chr13 93879773 93879773 1 + G A rs150023233 93879771 + 93879751 93879791 41 GCTGCTGCTCTCCCTCCCCGCCGGGGCGGATGTGAAGGCTC GCTGCTGCTCTCCCTCCCCGCCAGGGCGGATGTGAAGGCTC < 41bp 1 0.478046033146061 1 0.753415942192078 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPC6 ENSG00000183098 CDS Human protein_coding chr13:93879771 chr13:93879773 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_10272 0 0 1 0 1 GPC6 chr13:93879869 5'GT 93879869 Upstream 97bp
chr13 97928615 97928615 1 + T C rs36010428 97928608 + 97928588 97928628 41 ATGCAAATTTGCTCATCCCCCCAAAAGTTGTCAGGTTGAAA ATGCAAATTTGCTCATCCCCCCAAAAGCTGTCAGGTTGAAA < 41bp 1 0.230893629327467 1 0.350593984127045 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MBNL2 ENSG00000139793 CDS Human protein_coding chr13:97928608 chr13:97928615 synonymous SNV . 0 28 hm5C_associated_SNPs_10278 0 0 1 0 1 MBNL2 chr13:97928663 5'GT 97928663 Upstream 49bp
chr13 99098964 99098964 1 + C T rs61730897 99098975 + 99098955 99098995 41 CTACTCGCTCACCATCCCCTCTGAGTCCGAGAACATCCAGA CTACTCGCTTACCATCCCCTCTGAGTCCGAGAACATCCAGA < 41bp 1 0.226094483127096 1 0.0672430396080017 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99098975 chr13:99098964 synonymous SNV . 0 10 hm5C_associated_SNPs_10281 0 0 1 0 1 FARP1 chr13:99098920 3'AG 99098920 Downstream 45bp
chr13 99098964 99098964 1 + C T rs61730897 99098981 + 99098961 99099001 41 GCTCACCATCCCCTCTGAGTCCGAGAACATCCAGAAAGACT GCTTACCATCCCCTCTGAGTCCGAGAACATCCAGAAAGACT < 41bp 1 0.158904159121107 1 0.635285198688507 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99098981 chr13:99098964 synonymous SNV . 0 4 hm5C_associated_SNPs_10282 0 0 1 0 1 FARP1 chr13:99098920 3'AG 99098920 Downstream 45bp
chr13 100920951 100920951 1 + T C rs143838146 100920958 + 100920938 100920978 41 TTCAGGTTCTAGGTGATAAACATGGGAATGCTTTATGGCTT TTCAGGTTCTAGGCGATAAACATGGGAATGCTTTATGGCTT < 41bp 1 0.500076257460304 1 0.340781539678574 experiment 0.999847485079391 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCCA ENSG00000175198 CDS Human protein_coding chr13:100920958 chr13:100920951 synonymous SNV . 0 14 hm5C_associated_SNPs_10343 1 0 1 0 2 PCCA chr13:100920943 3'AG 100920943 Downstream 9bp
chr13 100920951 100920951 1 + T C rs143838146 100920958 + 100920938 100920978 41 TTCAGGTTCTAGGTGATAAACATGGGAATGCTTTATGGCTT TTCAGGTTCTAGGCGATAAACATGGGAATGCTTTATGGCTT < 41bp 1 0.500076257460304 1 0.340781539678574 experiment 0.999847485079391 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCCA ENSG00000175198 CDS Human protein_coding chr13:100920958 chr13:100920951 synonymous SNV . 0 14 hm5C_associated_SNPs_10343 1 0 1 0 2 PCCA chr13:100921037 5'GT 100921037 Upstream 87bp
chr13 101020827 101020827 1 + C A rs16957356 101020818 + 101020798 101020838 41 AGTAGCATCAAACAATGGGTCAGTGTTCTCGGTGAGTTTTC AGTAGCATCAAACAATGGGTCAGTGTTCTAGGTGAGTTTTC < 41bp 1 0.183164914706326 1 0.501634180545807 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCCA ENSG00000175198 CDS Human protein_coding chr13:101020818 chr13:101020827 stopgain 0.085 0 30 hm5C_associated_SNPs_10344 0 0 0 0 1 PCCA chr13:101020828 5'GT 101020828 Upstream 2bp
chr13 103299676 103299676 1 + C T rs150615380 103299672 + 103299652 103299692 41 GAACAAAAGACAGATGGGTTCAGGCGATGCCTATCCACATC GAACAAAAGACAGATGGGTTCAGGTGATGCCTATCCACATC < 41bp 1 0.760277179533924 1 0.689861953258514 experiment 0.479445640932151 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPP2 ENSG00000134900 CDS Human protein_coding chr13:103299672 chr13:103299676 synonymous SNV . 0 25 hm5C_associated_SNPs_10345 0 0 0 0 1 TPP2 chr13:103299694 5'GT 103299694 Upstream 19bp
chr13 110959787 110959787 1 + A G rs35466678 110959786 + 110959766 110959806 41 CCGGCGCCCAGAGAGCCCAGCAAGGCCGGCCGCCCTGCCGG CCGGCGCCCAGAGAGCCCAGCGAGGCCGGCCGCCCTGCCGG < 41bp 1 0.691836090111128 1 0.877061486244202 experiment 0.616327819777744 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 UTR5 Human protein_coding chr13:110959786 chr13:110959787 . . 0 22 hm5C_associated_SNPs_10347 3 0 1 0 1 COL4A2 chr13:110959875 5'GT 110959875 Upstream 89bp
chr13 111111173 111111173 1 + G A rs7990214 111111171 + 111111151 111111191 41 ACGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAG ACGAAGCTATCAAAGGTCTTCCAGGACTGCCAGGACCCAAG < 41bp 1 0.185326704785609 1 0.571271419525146 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111171 chr13:111111173 synonymous SNV . 0 23 hm5C_associated_SNPs_10348 1 0 1 0 1 COL4A2 chr13:111111118 3'AG 111111118 Downstream 56bp
chr13 111111173 111111173 1 + G A rs7990214 111111172 + 111111152 111111192 41 CGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAGG CGAAGCTATCAAAGGTCTTCCAGGACTGCCAGGACCCAAGG < 41bp 1 0.666985546879392 1 0.862051606178284 experiment 0.666028906241216 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111172 chr13:111111173 synonymous SNV . 0 22 hm5C_associated_SNPs_10349 1 0 1 0 1 COL4A2 chr13:111111118 3'AG 111111118 Downstream 56bp
chr13 111111185 111111185 1 + A G rs144654464 111111171 + 111111151 111111191 41 ACGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAG ACGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGGCCCAAG < 41bp 1 0.323326514201527 1 0.836434900760651 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111171 chr13:111111185 synonymous SNV . 0 35 hm5C_associated_SNPs_10350 0 0 0 0 2 COL4A2 chr13:111111118 3'AG 111111118 Downstream 68bp
chr13 111111185 111111185 1 + A G rs144654464 111111171 + 111111151 111111191 41 ACGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAG ACGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGGCCCAAG < 41bp 1 0.323326514201527 1 0.836434900760651 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111171 chr13:111111185 synonymous SNV . 0 35 hm5C_associated_SNPs_10350 0 0 0 0 2 COL4A2 chr13:111111281 5'GT 111111281 Upstream 97bp
chr13 111111185 111111185 1 + A G rs144654464 111111172 + 111111152 111111192 41 CGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAGG CGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGGCCCAAGG < 41bp 1 0.734220539360634 1 0.932799577713013 experiment 0.531558921278733 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111172 chr13:111111185 synonymous SNV . 0 34 hm5C_associated_SNPs_10351 0 0 0 0 2 COL4A2 chr13:111111118 3'AG 111111118 Downstream 68bp
chr13 111111185 111111185 1 + A G rs144654464 111111172 + 111111152 111111192 41 CGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAGG CGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGGCCCAAGG < 41bp 1 0.734220539360634 1 0.932799577713013 experiment 0.531558921278733 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111172 chr13:111111185 synonymous SNV . 0 34 hm5C_associated_SNPs_10351 0 0 0 0 2 COL4A2 chr13:111111281 5'GT 111111281 Upstream 97bp
chr13 111111235 111111235 1 + G A rs7990383 111111217 + 111111197 111111237 41 CGCAGGCATCAACGGGGAGCCGGGGAGGAAAGGGGACAGAG CGCAGGCATCAACGGGGAGCCGGGGAGGAAAGGGGACAAAG < 41bp 1 0.687860955080532 1 0.813098073005676 experiment 0.624278089838936 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111217 chr13:111111235 nonsynonymous SNV 0.126 1 39 hm5C_associated_SNPs_10352 1 0 0 0 1 COL4A2 chr13:111111281 5'GT 111111281 Upstream 47bp
chr13 111154058 111154058 1 + T A rs439831 111154069 + 111154049 111154089 41 GGGGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGG GGGGTTCCCAGGTATCACACCCCCTTCCAACATCTCTGGGG < 41bp 1 0.0650324774189507 1 0.0887761414051056 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111154069 chr13:111154058 synonymous SNV . 0 10 hm5C_associated_SNPs_10353 0 0 0 0 2 COL4A2 chr13:111154015 3'AG 111154015 Downstream 44bp
chr13 111154058 111154058 1 + T A rs439831 111154069 + 111154049 111154089 41 GGGGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGG GGGGTTCCCAGGTATCACACCCCCTTCCAACATCTCTGGGG < 41bp 1 0.0650324774189507 1 0.0887761414051056 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111154069 chr13:111154058 synonymous SNV . 0 10 hm5C_associated_SNPs_10353 0 0 0 0 2 COL4A2 chr13:111154131 5'GT 111154131 Upstream 74bp
chr13 111154058 111154058 1 + T A rs439831 111154071 + 111154051 111154091 41 GGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGGCA GGTTCCCAGGTATCACACCCCCTTCCAACATCTCTGGGGCA < 41bp 1 0.0074268612466415 1 0.18732813000679 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111154071 chr13:111154058 synonymous SNV . 0 8 hm5C_associated_SNPs_10354 0 0 0 0 2 COL4A2 chr13:111154015 3'AG 111154015 Downstream 44bp
chr13 111154058 111154058 1 + T A rs439831 111154071 + 111154051 111154091 41 GGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGGCA GGTTCCCAGGTATCACACCCCCTTCCAACATCTCTGGGGCA < 41bp 1 0.0074268612466415 1 0.18732813000679 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111154071 chr13:111154058 synonymous SNV . 0 8 hm5C_associated_SNPs_10354 0 0 0 0 2 COL4A2 chr13:111154131 5'GT 111154131 Upstream 74bp
chr13 111154061 111154061 1 + T C rs409858 111154069 + 111154049 111154089 41 GGGGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGG GGGGTTCCCTGGCATCACACCCCCTTCCAACATCTCTGGGG < 41bp 1 0.0771503449081071 1 0.0681957900524139 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111154069 chr13:111154061 synonymous SNV . 0 13 hm5C_associated_SNPs_10355 0 0 1 0 2 COL4A2 chr13:111154015 3'AG 111154015 Downstream 47bp
chr13 111154061 111154061 1 + T C rs409858 111154069 + 111154049 111154089 41 GGGGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGG GGGGTTCCCTGGCATCACACCCCCTTCCAACATCTCTGGGG < 41bp 1 0.0771503449081071 1 0.0681957900524139 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111154069 chr13:111154061 synonymous SNV . 0 13 hm5C_associated_SNPs_10355 0 0 1 0 2 COL4A2 chr13:111154131 5'GT 111154131 Upstream 71bp
chr13 111154061 111154061 1 + T C rs409858 111154071 + 111154051 111154091 41 GGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGGCA GGTTCCCTGGCATCACACCCCCTTCCAACATCTCTGGGGCA < 41bp 1 0.00739321886574842 1 0.343580514192581 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111154071 chr13:111154061 synonymous SNV . 0 11 hm5C_associated_SNPs_10356 0 0 1 0 2 COL4A2 chr13:111154015 3'AG 111154015 Downstream 47bp
chr13 111154061 111154061 1 + T C rs409858 111154071 + 111154051 111154091 41 GGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGGCA GGTTCCCTGGCATCACACCCCCTTCCAACATCTCTGGGGCA < 41bp 1 0.00739321886574842 1 0.343580514192581 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111154071 chr13:111154061 synonymous SNV . 0 11 hm5C_associated_SNPs_10356 0 0 1 0 2 COL4A2 chr13:111154131 5'GT 111154131 Upstream 71bp
chr13 111155773 111155773 1 + T A rs438758 111155778 + 111155758 111155798 41 GAACACTGGACCCACTGGGGCGGTGGGCGACAGAGGCCCCA GAACACTGGACCCACAGGGGCGGTGGGCGACAGAGGCCCCA < 41bp 1 0.226129177863684 1 0.613741993904114 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111155778 chr13:111155773 synonymous SNV . 0 16 hm5C_associated_SNPs_10357 0 0 0 0 2 COL4A2 chr13:111155730 3'AG 111155730 Downstream 44bp
chr13 111155773 111155773 1 + T A rs438758 111155778 + 111155758 111155798 41 GAACACTGGACCCACTGGGGCGGTGGGCGACAGAGGCCCCA GAACACTGGACCCACAGGGGCGGTGGGCGACAGAGGCCCCA < 41bp 1 0.226129177863684 1 0.613741993904114 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111155778 chr13:111155773 synonymous SNV . 0 16 hm5C_associated_SNPs_10357 0 0 0 0 2 COL4A2 chr13:111155828 5'GT 111155828 Upstream 56bp
chr13 111155779 111155779 1 + G A rs4773199 111155778 + 111155758 111155798 41 GAACACTGGACCCACTGGGGCGGTGGGCGACAGAGGCCCCA GAACACTGGACCCACTGGGGCAGTGGGCGACAGAGGCCCCA < 41bp 1 0.201387599348047 1 0.462307304143906 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111155778 chr13:111155779 synonymous SNV . 0 22 hm5C_associated_SNPs_10358 1 0 0 0 2 COL4A2 chr13:111155730 3'AG 111155730 Downstream 50bp
chr13 111155779 111155779 1 + G A rs4773199 111155778 + 111155758 111155798 41 GAACACTGGACCCACTGGGGCGGTGGGCGACAGAGGCCCCA GAACACTGGACCCACTGGGGCAGTGGGCGACAGAGGCCCCA < 41bp 1 0.201387599348047 1 0.462307304143906 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111155778 chr13:111155779 synonymous SNV . 0 22 hm5C_associated_SNPs_10358 1 0 0 0 2 COL4A2 chr13:111155828 5'GT 111155828 Upstream 50bp
chr13 111155786 111155786 1 + G A rs558814304 111155778 + 111155758 111155798 41 GAACACTGGACCCACTGGGGCGGTGGGCGACAGAGGCCCCA GAACACTGGACCCACTGGGGCGGTGGGCAACAGAGGCCCCA < 41bp 1 0.221226503469022 1 0.719749271869659 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111155778 chr13:111155786 nonsynonymous SNV 0.956 5 29 hm5C_associated_SNPs_10359 1 0 0 0 2 COL4A2 chr13:111155730 3'AG 111155730 Downstream 57bp
chr13 111155786 111155786 1 + G A rs558814304 111155778 + 111155758 111155798 41 GAACACTGGACCCACTGGGGCGGTGGGCGACAGAGGCCCCA GAACACTGGACCCACTGGGGCGGTGGGCAACAGAGGCCCCA < 41bp 1 0.221226503469022 1 0.719749271869659 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111155778 chr13:111155786 nonsynonymous SNV 0.956 5 29 hm5C_associated_SNPs_10359 1 0 0 0 2 COL4A2 chr13:111155828 5'GT 111155828 Upstream 43bp
chr13 111287909 111287909 1 + G A rs144532361 111287910 + 111287890 111287930 41 GTGGTCCAGAAAGGAGAGCGCGACATCCTCTCCAACGGCCA GTGGTCCAGAAAGGAGAGCACGACATCCTCTCCAACGGCCA < 41bp 1 0.76906438084522 1 0.506144762039185 experiment 0.46187123830956 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NAXD ENSG00000213995 CDS Human protein_coding chr13:111287910 chr13:111287909 nonsynonymous SNV 0.001 0 20 hm5C_associated_SNPs_10360 0 0 1 0 2 NAXD chr13:111287815 3'AG 111287815 Downstream 95bp
chr13 111287909 111287909 1 + G A rs144532361 111287910 + 111287890 111287930 41 GTGGTCCAGAAAGGAGAGCGCGACATCCTCTCCAACGGCCA GTGGTCCAGAAAGGAGAGCACGACATCCTCTCCAACGGCCA < 41bp 1 0.76906438084522 1 0.506144762039185 experiment 0.46187123830956 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NAXD ENSG00000213995 CDS Human protein_coding chr13:111287910 chr13:111287909 nonsynonymous SNV 0.001 0 20 hm5C_associated_SNPs_10360 0 0 1 0 2 NAXD chr13:111287820 3'AG 111287820 Downstream 90bp
chr13 113487196 113487196 1 + G A rs138532095 113487177 + 113487157 113487197 41 GAACTGCTTTTTTATAGGAGCGCGAGGAGCTGTTTTTCCGG GAACTGCTTTTTTATAGGAGCGCGAGGAGCTGTTTTTCCAG < 41bp 1 0.690938610137034 1 0.753544926643372 experiment 0.618122779725932 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP11A ENSG00000068650 CDS Human protein_coding chr13:113487177 chr13:113487196 nonsynonymous SNV 0.990 3 40 hm5C_associated_SNPs_10368 0 0 1 0 1 ATP11A chr13:113487174 3'AG 113487174 Downstream 23bp
chr13 113729367 113729367 1 + A G rs117508840 113729386 + 113729366 113729406 41 AACAAGCACTACGCGGTAGACTCCATCCGCCCAAAGTGCCA AGCAAGCACTACGCGGTAGACTCCATCCGCCCAAAGTGCCA < 41bp 1 0.720542258637423 1 0.910964787006378 experiment 0.558915482725154 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113729386 chr13:113729367 nonsynonymous SNV 0.353 0 2 hm5C_associated_SNPs_10370 0 0 1 0 1 MCF2L chr13:113729312 3'AG 113729312 Downstream 56bp
chr13 113732707 113732707 1 + C T rs145119738 113732702 + 113732682 113732722 41 CGGCGAGGCTCTGAGAACTCCAGCTCCGAGGGCGGTGCGCT CGGCGAGGCTCTGAGAACTCCAGCTTCGAGGGCGGTGCGCT < 41bp 1 0.386964935412722 1 0.39242947101593 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113732702 chr13:113732707 nonsynonymous SNV 0.830 0 26 hm5C_associated_SNPs_10371 0 0 1 0 2 MCF2L chr13:113732677 3'AG 113732677 Downstream 31bp
chr13 113732707 113732707 1 + C T rs145119738 113732702 + 113732682 113732722 41 CGGCGAGGCTCTGAGAACTCCAGCTCCGAGGGCGGTGCGCT CGGCGAGGCTCTGAGAACTCCAGCTTCGAGGGCGGTGCGCT < 41bp 1 0.386964935412722 1 0.39242947101593 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113732702 chr13:113732707 nonsynonymous SNV 0.830 0 26 hm5C_associated_SNPs_10371 0 0 1 0 2 MCF2L chr13:113732750 5'GT 113732750 Upstream 44bp
chr13 113741590 113741590 1 + G A rs9604022 113741589 + 113741569 113741609 41 CAAGCTGCTGATGCAGGGCTCGTTCAGCGTCTGGACCGACC CAAGCTGCTGATGCAGGGCTCATTCAGCGTCTGGACCGACC < 41bp 1 0.0309025996905276 1 0.0591806471347809 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113741589 chr13:113741590 synonymous SNV . 0 22 hm5C_associated_SNPs_10372 0 0 1 0 1 MCF2L chr13:113741549 3'AG 113741549 Downstream 42bp
chr13 113863128 113863128 1 + G A rs542701792 113863147 + 113863127 113863167 41 CGGGGTCTTTCTGCCGGGGCCCCGTCCTCTCAGCCGGGACG CAGGGTCTTTCTGCCGGGGCCCCGTCCTCTCAGCCGGGACG < 41bp 1 0.418283952734774 1 0.0611231327056885 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CUL4A;PCID2 ENSG00000139842 UTR5 Human protein_coding chr13:113863147 chr13:113863128 . . 0 2 hm5C_associated_SNPs_10373 0 0 1 0 1 CUL4A;PCID2 chr13:113863182 5'GT 113863182 Upstream 55bp
chr13 113863128 113863128 1 + G A rs542701792 113863148 + 113863128 113863168 41 GGGGTCTTTCTGCCGGGGCCCCGTCCTCTCAGCCGGGACGC AGGGTCTTTCTGCCGGGGCCCCGTCCTCTCAGCCGGGACGC < 41bp 1 0.191643708454308 1 0.276394933462143 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CUL4A;PCID2 ENSG00000139842 UTR5 Human protein_coding chr13:113863148 chr13:113863128 . . 0 1 hm5C_associated_SNPs_10374 0 0 1 0 1 CUL4A;PCID2 chr13:113863182 5'GT 113863182 Upstream 55bp
chr13 114175032 114175032 1 + G A rs2260335 114175039 + 114175019 114175059 41 CATACAGGCGGGCGCCAGTGCATCTTCTAGGTAAACGCTTT CATACAGGCGGGCACCAGTGCATCTTCTAGGTAAACGCTTT < 41bp 1 0.179017648771792 1 0.14364105463028 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114175039 chr13:114175032 nonsynonymous SNV 0.001 0 14 hm5C_associated_SNPs_10377 0 0 1 0 1 TMCO3 chr13:114175048 5'GT 114175048 Upstream 17bp
chr13 114175038 114175038 1 + G A rs7319493 114175039 + 114175019 114175059 41 CATACAGGCGGGCGCCAGTGCATCTTCTAGGTAAACGCTTT CATACAGGCGGGCGCCAGTACATCTTCTAGGTAAACGCTTT < 41bp 1 0.24181272385786 1 0.278241991996765 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114175039 chr13:114175038 nonsynonymous SNV 0.000 0 20 hm5C_associated_SNPs_10378 0 0 1 0 1 TMCO3 chr13:114175048 5'GT 114175048 Upstream 11bp
chr13 114541079 114541079 1 - G A rs201561637 114541062 - 114541042 114541082 41 CAGCGGCTTCGAGCTCTCCTCTGATGGCAGGACCTGCCAAG CAGTGGCTTCGAGCTCTCCTCTGATGGCAGGACCTGCCAAG < 41bp 1 0.502441603901384 1 0.388643741607666 experiment 0.995116792197232 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GAS6 ENSG00000183087 CDS Human protein_coding chr13:114541062 chr13:114541079 synonymous SNV . 0 4 hm5C_associated_SNPs_10379 0 0 1 0 2 GAS6 chr13:114541042 5'GT 114541042 Upstream 38bp
chr13 114541079 114541079 1 - G A rs201561637 114541062 - 114541042 114541082 41 CAGCGGCTTCGAGCTCTCCTCTGATGGCAGGACCTGCCAAG CAGTGGCTTCGAGCTCTCCTCTGATGGCAGGACCTGCCAAG < 41bp 1 0.502441603901384 1 0.388643741607666 experiment 0.995116792197232 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GAS6 ENSG00000183087 CDS Human protein_coding chr13:114541062 chr13:114541079 synonymous SNV . 0 4 hm5C_associated_SNPs_10379 0 0 1 0 2 GAS6 chr13:114541164 3'AG 114541164 Downstream 86bp
chr14 20822308 20822308 1 + A G rs3093921 20822301 + 20822281 20822321 41 CTCCCTTGAAGCCAGAGTCACAGCTAGATCTTCGGGTACAG CTCCCTTGAAGCCAGAGTCACAGCTAGGTCTTCGGGTACAG < 41bp 1 0.476678638209382 1 0.167931646108627 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARP2 ENSG00000129484 CDS Human protein_coding chr14:20822301 chr14:20822308 nonsynonymous SNV 0.965 2 28 hm5C_associated_SNPs_10382 0 0 1 0 1 PARP2 chr14:20822406 5'GT 20822406 Upstream 99bp
chr14 20937601 20937601 1 + C G rs113248050 20937582 + 20937562 20937602 41 GCCAACTGTGCGAACCAGACCCGGCAGCCTTGCTCAGTTCA GCCAACTGTGCGAACCAGACCCGGCAGCCTTGCTCAGTTGA < 41bp 1 0.273384197998195 1 0.408387005329132 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PNP ENSG00000198805 UTR5 Human protein_coding chr14:20937582 chr14:20937601 . . 0 40 hm5C_associated_SNPs_10385 1 0 1 0 1 PNP chr14:20937694 5'GT 20937694 Upstream 94bp
chr14 21462733 21462733 1 + A G rs373040366 21462722 + 21462702 21462742 41 GTGGTTCAGAATCTGGGGAGCCTTATATTCCAGGTGTCTTT GTGGTTCAGAATCTGGGGAGCCTTATATTCCGGGTGTCTTT < 41bp 1 0.0804766480575353 1 0.015078067779541 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL17 ENSG00000165792 CDS Human protein_coding chr14:21462722 chr14:21462733 synonymous SNV . 0 32 hm5C_associated_SNPs_10461 0 0 1 0 1 METTL17 chr14:21462702 3'AG 21462702 Downstream 32bp
chr14 21543514 21543514 1 + C T rs61739627 21543511 + 21543491 21543531 41 GACACACAGGCCCAGAAGGCCCCCTGTCTGACACTCCAACA GACACACAGGCCCAGAAGGCCCCTTGTCTGACACTCCAACA < 41bp 1 0.047934614814887 1 0.03591588139534 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21543511 chr14:21543514 synonymous SNV . 0 24 hm5C_associated_SNPs_10462 0 0 1 0 1 ARHGEF40 chr14:21543491 3'AG 21543491 Downstream 24bp
chr14 21543514 21543514 1 + C T rs61739627 21543512 + 21543492 21543532 41 ACACACAGGCCCAGAAGGCCCCCTGTCTGACACTCCAACAC ACACACAGGCCCAGAAGGCCCCTTGTCTGACACTCCAACAC < 41bp 1 0.0627168802156346 1 0.0310387313365936 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21543512 chr14:21543514 synonymous SNV . 0 23 hm5C_associated_SNPs_10463 0 0 1 0 1 ARHGEF40 chr14:21543491 3'AG 21543491 Downstream 24bp
chr14 21553004 21553004 1 + C T rs749731 21553017 + 21552997 21553037 41 TTCTCTTCGAGCATCTCCTCCTGTTCAGCAAGCTCAAGGGC TTCTCTTTGAGCATCTCCTCCTGTTCAGCAAGCTCAAGGGC < 41bp 1 0.136131236815016 1 0.163815885782242 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21553017 chr14:21553004 synonymous SNV . 0 8 hm5C_associated_SNPs_10464 0 0 1 0 2 ARHGEF40 chr14:21552912 3'AG 21552912 Downstream 93bp
chr14 21553004 21553004 1 + C T rs749731 21553017 + 21552997 21553037 41 TTCTCTTCGAGCATCTCCTCCTGTTCAGCAAGCTCAAGGGC TTCTCTTTGAGCATCTCCTCCTGTTCAGCAAGCTCAAGGGC < 41bp 1 0.136131236815016 1 0.163815885782242 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21553017 chr14:21553004 synonymous SNV . 0 8 hm5C_associated_SNPs_10464 0 0 1 0 2 ARHGEF40 chr14:21553082 5'GT 21553082 Upstream 79bp
chr14 21945415 21945415 1 + A G rs2282046 21945416 + 21945396 21945436 41 GGAGCGATGAGGGTCTGAGACGGTGGGAGCGGTTGTGTGAA GGAGCGATGAGGGTCTGAGGCGGTGGGAGCGGTTGTGTGAA < 41bp 1 0.727021923822865 1 0.830065906047821 experiment 0.54595615235427 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOX4 ENSG00000092203 UTR5 Human protein_coding chr14:21945416 chr14:21945415 . . 0 20 hm5C_associated_SNPs_10465 0 0 1 0 1 TOX4 chr14:21945443 5'GT 21945443 Upstream 29bp
chr14 21945435 21945435 1 + A C rs150058163 21945416 + 21945396 21945436 41 GGAGCGATGAGGGTCTGAGACGGTGGGAGCGGTTGTGTGAA GGAGCGATGAGGGTCTGAGACGGTGGGAGCGGTTGTGTGCA < 41bp 1 0.721932278135925 1 0.720207512378693 experiment 0.556135443728151 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOX4 ENSG00000092203 UTR5 Human protein_coding chr14:21945416 chr14:21945435 . . 0 40 hm5C_associated_SNPs_10466 0 0 1 0 1 TOX4 chr14:21945443 5'GT 21945443 Upstream 9bp
chr14 23311892 23311892 1 + C G rs371769574 23311874 + 23311854 23311894 41 GGCCCCAACATTGGAGGAGACACCCACTTTGACTCTGCCGA GGCCCCAACATTGGAGGAGACACCCACTTTGACTCTGCGGA < 41bp 1 0.247680661049729 1 0.0705918669700623 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP14 ENSG00000157227 CDS Human protein_coding chr14:23311874 chr14:23311892 synonymous SNV . 0 39 hm5C_associated_SNPs_10467 0 0 0 0 1 MMP14 chr14:23311926 5'GT 23311926 Upstream 35bp
chr14 24025505 24025505 1 + C A rs74039346 24025488 + 24025468 24025508 41 ACTGCTCCCGGCATTCCTCGCGAGTGTATGGCGTGGGCTCC ACTGCTCCCGGCATTCCTCGCGAGTGTATGGCGTGGGATCC < 41bp 1 0.685883862171584 1 0.910886108875275 experiment 0.628232275656832 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control THTPA ENSG00000157306 ncRNA_exonic Human processed_transcript chr14:24025488 chr14:24025505 . . 0 38 hm5C_associated_SNPs_10480 0 0 1 0 1 THTPA chr14:24025552 5'GT 24025552 Upstream 48bp
chr14 24505764 24505764 1 + T A rs145675272 24505774 + 24505754 24505794 41 GTCGGTGCGGTTGGCCAGCTCCGGGATGACCCGCCGGGACC GTCGGTGCGGATGGCCAGCTCCGGGATGACCCGCCGGGACC < 41bp 1 0.755909862674497 1 0.830120086669922 experiment 0.488180274651006 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DHRS4L1 ENSG00000225766 ncRNA_exonic Human processed_transcript chr14:24505774 chr14:24505764 . . 0 11 hm5C_associated_SNPs_10484 0 0 0 0 1 DHRS4L1 chr14:24505837 5'GT 24505837 Upstream 74bp
chr14 24567504 24567504 1 + C T rs140683877 24567497 + 24567477 24567517 41 CTTCTCAGCGGGACACGGTACAACTCCCGCCTGGTGGGGCC CTTCTCAGCGGGACACGGTACAACTCCTGCCTGGTGGGGCC < 41bp 1 0.582962281397159 1 0.169971823692322 experiment 0.834075437205681 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCK2 ENSG00000100889 CDS Human protein_coding chr14:24567497 chr14:24567504 nonsynonymous SNV 0.328 0 28 hm5C_associated_SNPs_10485 0 0 1 0 1 PCK2 chr14:24567412 3'AG 24567412 Downstream 93bp
chr14 24567508 24567508 1 + T C rs2229661 24567497 + 24567477 24567517 41 CTTCTCAGCGGGACACGGTACAACTCCCGCCTGGTGGGGCC CTTCTCAGCGGGACACGGTACAACTCCCGCCCGGTGGGGCC < 41bp 1 0.570940934267038 1 0.069913238286972 experiment 0.858118131465925 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCK2 ENSG00000100889 CDS Human protein_coding chr14:24567497 chr14:24567508 synonymous SNV . 0 32 hm5C_associated_SNPs_10486 0 0 1 0 1 PCK2 chr14:24567412 3'AG 24567412 Downstream 97bp
chr14 24568323 24568323 1 + C T rs75497728 24568331 + 24568311 24568351 41 GTGCCCGACCAGCGGGAGATCATCTCCTTCGGCAGCGGCTA GTGCCCGACCAGTGGGAGATCATCTCCTTCGGCAGCGGCTA < 41bp 1 0.292058318739974 1 0.150264292955399 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCK2 ENSG00000100889 CDS Human protein_coding chr14:24568331 chr14:24568323 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_10487 0 0 1 0 1 PCK2 chr14:24568258 3'AG 24568258 Downstream 66bp
chr14 24568340 24568340 1 + C T rs149974910 24568331 + 24568311 24568351 41 GTGCCCGACCAGCGGGAGATCATCTCCTTCGGCAGCGGCTA GTGCCCGACCAGCGGGAGATCATCTCCTTTGGCAGCGGCTA < 41bp 1 0.256912945047723 1 0.225825428962708 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCK2 ENSG00000100889 CDS Human protein_coding chr14:24568331 chr14:24568340 synonymous SNV . 0 30 hm5C_associated_SNPs_10488 0 0 1 0 1 PCK2 chr14:24568258 3'AG 24568258 Downstream 83bp
chr14 24773387 24773387 1 + T C rs2144494 24773383 + 24773363 24773403 41 GACGGGACCACAGCTTCTGTCCCTTGCCCAAAGTCCCGCTG GACGGGACCACAGCTTCTGTCCCTCGCCCAAAGTCCCGCTG < 41bp 1 0.14157074949073 1 0.121186465024948 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOP9 ENSG00000196943 CDS Human protein_coding chr14:24773383 chr14:24773387 synonymous SNV . 0 25 hm5C_associated_SNPs_10492 0 0 1 0 1 NOP9 chr14:24773483 5'GT 24773483 Upstream 97bp
chr14 24779933 24779933 1 + C A rs115630307 24779945 + 24779925 24779965 41 TCGCGGGCCACAGGCACAGCCTTCCTGCTGCTGGCGGCGCT TCGCGGGCAACAGGCACAGCCTTCCTGCTGCTGGCGGCGCT < 41bp 1 0.18187394428187 1 0.28450533747673 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LTB4R2 ENSG00000213906;ENSG00000272658 CDS Human other chr14:24779945 chr14:24779933 synonymous SNV . 0 9 hm5C_associated_SNPs_10493 0 0 1 0 1 CIDEB;LTB4R2 chr14:24779861 3'AG 24779861 Downstream 73bp
chr14 24784911 24784911 1 + T C rs3742511 24784923 + 24784903 24784943 41 TTCATCTCTCTGCTGGCTATCATCCTGCTGTCAGTGGCGCT TTCATCTCCCTGCTGGCTATCATCCTGCTGTCAGTGGCGCT < 41bp 1 0.114607541433437 1 0.778288424015045 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LTB4R ENSG00000213903 CDS Human protein_coding chr14:24784923 chr14:24784911 synonymous SNV . 0 9 hm5C_associated_SNPs_10494 0 0 1 0 1 LTB4R chr14:24784843 3'AG 24784843 Downstream 69bp
chr14 24909629 24909629 1 - C A rs11538256 24909627 - 24909607 24909647 41 TTCGCCTGGGCCTGGGGGGCCCCATCGGCTCAGGCCACCAA TTCGCCTGGGCCTGGGGGTCCCCATCGGCTCAGGCCACCAA < 41bp 1 0.356832918178708 1 0.160373687744141 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SDR39U1 ENSG00000100445 CDS Human protein_coding chr14:24909627 chr14:24909629 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_10510 0 0 1 0 1 SDR39U1 chr14:24909698 3'AG 24909698 Downstream 70bp
chr14 31494964 31494964 1 + G A rs147839434 31494972 + 31494952 31494992 41 GGAAAAGCCGTTGAGAGGACCATCACAACCTGAGCAGCACA GGAAAAGCCGTTAAGAGGACCATCACAACCTGAGCAGCACA < 41bp 1 0.277746929080624 1 0.30360934138298 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP4S1 ENSG00000100478 UTR5 Human protein_coding chr14:31494972 chr14:31494964 . . 0 13 hm5C_associated_SNPs_10511 0 0 1 0 1 AP4S1 chr14:31494993 5'GT 31494993 Upstream 30bp
chr14 31494988 31494988 1 + G A rs78648016 31494972 + 31494952 31494992 41 GGAAAAGCCGTTGAGAGGACCATCACAACCTGAGCAGCACA GGAAAAGCCGTTGAGAGGACCATCACAACCTGAGCAACACA < 41bp 1 0.317287475281829 1 0.293773949146271 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP4S1 ENSG00000100478 UTR5 Human protein_coding chr14:31494972 chr14:31494988 . . 0 37 hm5C_associated_SNPs_10512 1 0 1 0 1 AP4S1 chr14:31494993 5'GT 31494993 Upstream 6bp
chr14 32546205 32546205 1 + C A rs535880509 32546207 + 32546187 32546227 41 CAGGCTGCGCCGCCGCGCCGCCGCTCCGCCCCCGGTCGGGT CAGGCTGCGCCGCCGCGCAGCCGCTCCGCCCCCGGTCGGGT < 41bp 1 0.298110307437856 1 0.134923726320267 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP5;ARHGAP5-AS1 ENSG00000100852 UTR5 Human protein_coding chr14:32546207 chr14:32546205 . . 0 19 hm5C_associated_SNPs_10515 0 0 0 0 1 ARHGAP5;ARHGAP5-AS1 chr14:32546259 5'GT 32546259 Upstream 55bp
chr14 37739659 37739659 1 + A T rs35870036 37739679 + 37739659 37739699 41 AGAGAAAACTAAAGTTTAAGCTGGAACTCCAAGAGAAAGAA TGAGAAAACTAAAGTTTAAGCTGGAACTCCAAGAGAAAGAA < 41bp 1 0.647710852890296 1 0.457667768001556 experiment 0.704578294219407 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MIPOL1 ENSG00000151338 CDS Human protein_coding chr14:37739679 chr14:37739659 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_10516 0 0 1 0 2 MIPOL1 chr14:37739625 3'AG 37739625 Downstream 35bp
chr14 37739659 37739659 1 + A T rs35870036 37739679 + 37739659 37739699 41 AGAGAAAACTAAAGTTTAAGCTGGAACTCCAAGAGAAAGAA TGAGAAAACTAAAGTTTAAGCTGGAACTCCAAGAGAAAGAA < 41bp 1 0.647710852890296 1 0.457667768001556 experiment 0.704578294219407 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MIPOL1 ENSG00000151338 CDS Human protein_coding chr14:37739679 chr14:37739659 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_10516 0 0 1 0 2 MIPOL1 chr14:37739730 5'GT 37739730 Upstream 72bp
chr14 50789387 50789387 1 + C T rs142828913 50789391 + 50789371 50789411 41 AAATACAAGATTCAGGCGATCGACGCCACCGACTCTTGTAT AAATACAAGATTCAGGTGATCGACGCCACCGACTCTTGTAT < 41bp 1 0.671794991286447 1 0.306312024593353 experiment 0.656410017427107 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP5S ENSG00000125375 CDS Human protein_coding chr14:50789391 chr14:50789387 nonsynonymous SNV 0.552 3 17 hm5C_associated_SNPs_10532 0 0 1 0 1 ATP5S chr14:50789437 5'GT 50789437 Upstream 51bp
chr14 50789387 50789387 1 + C T rs142828913 50789396 + 50789376 50789416 41 CAAGATTCAGGCGATCGACGCCACCGACTCTTGTATCATGA CAAGATTCAGGTGATCGACGCCACCGACTCTTGTATCATGA < 41bp 1 0.0701681269424274 1 0.118468761444092 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP5S ENSG00000125375 CDS Human protein_coding chr14:50789396 chr14:50789387 nonsynonymous SNV 0.552 3 12 hm5C_associated_SNPs_10533 0 0 1 0 1 ATP5S chr14:50789437 5'GT 50789437 Upstream 51bp
chr14 50789400 50789400 1 + C T rs188991727 50789391 + 50789371 50789411 41 AAATACAAGATTCAGGCGATCGACGCCACCGACTCTTGTAT AAATACAAGATTCAGGCGATCGACGCCACTGACTCTTGTAT < 41bp 1 0.569186193042597 1 0.270759165287018 experiment 0.861627613914806 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP5S ENSG00000125375 CDS Human protein_coding chr14:50789391 chr14:50789400 synonymous SNV . 0 30 hm5C_associated_SNPs_10534 0 0 1 0 1 ATP5S chr14:50789437 5'GT 50789437 Upstream 38bp
chr14 50789400 50789400 1 + C T rs188991727 50789396 + 50789376 50789416 41 CAAGATTCAGGCGATCGACGCCACCGACTCTTGTATCATGA CAAGATTCAGGCGATCGACGCCACTGACTCTTGTATCATGA < 41bp 1 0.119315395475262 1 0.163827359676361 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP5S ENSG00000125375 CDS Human protein_coding chr14:50789396 chr14:50789400 synonymous SNV . 0 25 hm5C_associated_SNPs_10535 0 0 1 0 1 ATP5S chr14:50789437 5'GT 50789437 Upstream 38bp
chr14 51057727 51057727 1 + G A rs1060197 51057723 + 51057703 51057743 41 TTTTTCATGGAGAGGTGGATCTGAGCGAGAGACCACAGGAA TTTTTCATGGAGAGGTGGATCTGAACGAGAGACCACAGGAA < 41bp 1 0.778030460996668 1 0.265607088804245 experiment 0.443939078006664 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATL1 ENSG00000198513 CDS Human protein_coding chr14:51057723 chr14:51057727 synonymous SNV . 0 25 hm5C_associated_SNPs_10536 3 0 0 0 2 ATL1 chr14:51057659 3'AG 51057659 Downstream 69bp
chr14 51057727 51057727 1 + G A rs1060197 51057723 + 51057703 51057743 41 TTTTTCATGGAGAGGTGGATCTGAGCGAGAGACCACAGGAA TTTTTCATGGAGAGGTGGATCTGAACGAGAGACCACAGGAA < 41bp 1 0.778030460996668 1 0.265607088804245 experiment 0.443939078006664 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATL1 ENSG00000198513 CDS Human protein_coding chr14:51057723 chr14:51057727 synonymous SNV . 0 25 hm5C_associated_SNPs_10536 3 0 0 0 2 ATL1 chr14:51057793 5'GT 51057793 Upstream 67bp
chr14 55531358 55531358 1 + C T rs149884572 55531340 + 55531320 55531360 41 TTTTTCTATTGCAGTCTTACCATTAAGTTAACAATGGACGA TTTTTCTATTGCAGTCTTACCATTAAGTTAACAATGGATGA < 41bp 1 0.207656110519747 1 0.203903883695602 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAPK1IP1L ENSG00000168175 UTR3 Human protein_coding chr14:55531340 chr14:55531358 . . 0 39 hm5C_associated_SNPs_10541 0 0 1 0 1 MAPK1IP1L chr14:55531334 3'AG 55531334 Downstream 25bp
chr14 59014522 59014522 1 + G A rs140026883 59014534 + 59014514 59014554 41 CACTCTCCGCTTCACAGATGCCCCCTGCCAAGATGTCAGTG CACTCTCCACTTCACAGATGCCCCCTGCCAAGATGTCAGTG < 41bp 1 0.0918379228687739 1 0.0365717113018036 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA0586 ENSG00000100578 CDS Human protein_coding chr14:59014534 chr14:59014522 nonsynonymous SNV 0.000 0 9 hm5C_associated_SNPs_10554 0 0 0 0 1 KIAA0586 chr14:59014499 3'AG 59014499 Downstream 24bp
chr14 59951278 59951278 1 + T C rs10140007 59951294 + 59951274 59951314 41 CTAGTGCTTCTCGAAAAAAACCTTCAGGCGGCCCATGGGTG CTAGCGCTTCTCGAAAAAAACCTTCAGGCGGCCCATGGGTG < 41bp 1 0.0613231347400579 1 0.162271201610565 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JKAMP ENSG00000258782 ncRNA_intronic Human protein_coding chr14:59951294 chr14:59951278 . . 0 5 hm5C_associated_SNPs_10555 0 0 1 0 1 JKAMP chr14:59951311 5'GT 59951311 Upstream 34bp
chr14 59951278 59951278 1 + T C rs10140007 59951295 + 59951275 59951315 41 TAGTGCTTCTCGAAAAAAACCTTCAGGCGGCCCATGGGTGA TAGCGCTTCTCGAAAAAAACCTTCAGGCGGCCCATGGGTGA < 41bp 1 0.70119007223107 1 0.162023484706879 experiment 0.597619855537861 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JKAMP ENSG00000258782 ncRNA_intronic Human protein_coding chr14:59951295 chr14:59951278 . . 0 4 hm5C_associated_SNPs_10556 0 0 1 0 1 JKAMP chr14:59951311 5'GT 59951311 Upstream 34bp
chr14 59970589 59970589 1 + G A rs367737327 59970605 + 59970585 59970625 41 TTCTGGTCAGAAAGAAAAGACTTATTGTTCTCTTCAGCCAC TTCTAGTCAGAAAGAAAAGACTTATTGTTCTCTTCAGCCAC < 41bp 1 0.187937757260349 1 0.0508999824523926 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control JKAMP ENSG00000050130 CDS Human protein_coding chr14:59970605 chr14:59970589 synonymous SNV . 0 5 hm5C_associated_SNPs_10557 0 0 0 0 1 JKAMP chr14:59970572 3'AG 59970572 Downstream 18bp
chr14 60591887 60591887 1 + G A rs167437 60591886 + 60591866 60591906 41 GGTCATATATTGAGAGTTTACGGTGGTGTTTTGCCTTGGTC GGTCATATATTGAGAGTTTACAGTGGTGTTTTGCCTTGGTC < 41bp 1 0.730081503452326 1 0.569202661514282 experiment 0.539836993095347 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60591886 chr14:60591887 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_10558 0 0 1 0 1 PCNX4 chr14:60591969 5'GT 60591969 Upstream 83bp
chr14 60592491 60592491 1 + A C rs145320435 60592489 + 60592469 60592509 41 TGATGAAAAGTGGAAGGAAGCAATTTTACAAGAAAAGCCAT TGATGAAAAGTGGAAGGAAGCACTTTTACAAGAAAAGCCAT < 41bp 1 0.348595551509296 1 0.11495178937912 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60592489 chr14:60592491 nonsynonymous SNV 0.928 1 23 hm5C_associated_SNPs_10559 0 0 1 2 1 PCNX4 chr14:60592541 5'GT 60592541 Upstream 51bp
chr14 61201634 61201634 1 + C T rs4151150 61201633 + 61201613 61201653 41 CACCAAATATCGGAACCCCTCCTTGAAGCTGATGGTGAATG CACCAAATATCGGAACCCCTCTTTGAAGCTGATGGTGAATG < 41bp 1 0.283519893866961 1 0.135496228933334 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61201633 chr14:61201634 synonymous SNV . 0 22 hm5C_associated_SNPs_10560 0 0 1 0 1 MNAT1 chr14:61201669 5'GT 61201669 Upstream 36bp
chr14 61275053 61275053 1 + G C rs148083759 61275055 + 61275035 61275075 41 TAATGCAGTTTTCAACTTGACCAACAATGTGGATTTGGACA TAATGCAGTTTTCAACTTCACCAACAATGTGGATTTGGACA < 41bp 1 0.074333585822019 1 0.0566551089286804 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61275055 chr14:61275053 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_10561 0 0 1 0 2 MNAT1 chr14:61275043 3'AG 61275043 Downstream 11bp
chr14 61275053 61275053 1 + G C rs148083759 61275055 + 61275035 61275075 41 TAATGCAGTTTTCAACTTGACCAACAATGTGGATTTGGACA TAATGCAGTTTTCAACTTCACCAACAATGTGGATTTGGACA < 41bp 1 0.074333585822019 1 0.0566551089286804 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61275055 chr14:61275053 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_10561 0 0 1 0 2 MNAT1 chr14:61275146 5'GT 61275146 Upstream 94bp
chr14 61275053 61275053 1 + G C rs148083759 61275056 + 61275036 61275076 41 AATGCAGTTTTCAACTTGACCAACAATGTGGATTTGGACAA AATGCAGTTTTCAACTTCACCAACAATGTGGATTTGGACAA < 41bp 1 0.756158934393962 1 0.372649282217026 experiment 0.487682131212076 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61275056 chr14:61275053 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_10562 0 0 1 0 2 MNAT1 chr14:61275043 3'AG 61275043 Downstream 11bp
chr14 61275053 61275053 1 + G C rs148083759 61275056 + 61275036 61275076 41 AATGCAGTTTTCAACTTGACCAACAATGTGGATTTGGACAA AATGCAGTTTTCAACTTCACCAACAATGTGGATTTGGACAA < 41bp 1 0.756158934393962 1 0.372649282217026 experiment 0.487682131212076 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61275056 chr14:61275053 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_10562 0 0 1 0 2 MNAT1 chr14:61275146 5'GT 61275146 Upstream 94bp
chr14 62203623 62203623 1 + G A rs142179458 62203638 + 62203618 62203658 41 AGCACGACTTGATTTTCTCCCTTCAACAAACAGAATGTGTC AGCACAACTTGATTTTCTCCCTTCAACAAACAGAATGTGTC < 41bp 1 0.323200944170102 1 0.696730971336365 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout HIF1A ENSG00000100644 CDS Human protein_coding chr14:62203638 chr14:62203623 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_10564 0 0 1 0 1 HIF1A chr14:62203607 3'AG 62203607 Downstream 17bp
chr14 64676751 64676751 1 + C G rs36215895 64676732 + 64676712 64676752 41 AGCAGTACCGGCGGCTGGCCCGGGAGAACCGCACAGACACG AGCAGTACCGGCGGCTGGCCCGGGAGAACCGCACAGACAGG < 41bp 1 0.59048480797872 1 0.960736751556396 experiment 0.81903038404256 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64676732 chr14:64676751 nonsynonymous SNV 0.986 0 40 hm5C_associated_SNPs_10566 0 0 0 0 2 SYNE2 chr14:64676660 3'AG 64676660 Downstream 92bp
chr14 64676751 64676751 1 + C G rs36215895 64676732 + 64676712 64676752 41 AGCAGTACCGGCGGCTGGCCCGGGAGAACCGCACAGACACG AGCAGTACCGGCGGCTGGCCCGGGAGAACCGCACAGACAGG < 41bp 1 0.59048480797872 1 0.960736751556396 experiment 0.81903038404256 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64676732 chr14:64676751 nonsynonymous SNV 0.986 0 40 hm5C_associated_SNPs_10566 0 0 0 0 2 SYNE2 chr14:64676669 3'AG 64676669 Downstream 83bp
chr14 64687305 64687305 1 + G A rs34820571 64687313 + 64687293 64687333 41 GCAGCACAGGGCGCAGTGGACAGCTGGAGAGGGGGCTTACG GCAGCACAGGGCACAGTGGACAGCTGGAGAGGGGGCTTACG < 41bp 1 0.299587016301069 1 0.511377155780792 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64687313 chr14:64687305 nonsynonymous SNV 0.001 0 13 hm5C_associated_SNPs_10567 2 0 1 0 1 SYNE2 chr14:64687355 5'GT 64687355 Upstream 51bp
chr14 64687327 64687327 1 + G C rs140676416 64687313 + 64687293 64687333 41 GCAGCACAGGGCGCAGTGGACAGCTGGAGAGGGGGCTTACG GCAGCACAGGGCGCAGTGGACAGCTGGAGAGGGGCCTTACG < 41bp 1 0.363147068539049 1 0.649260640144348 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64687313 chr14:64687327 nonsynonymous SNV 0.736 0 35 hm5C_associated_SNPs_10568 0 0 0 0 1 SYNE2 chr14:64687355 5'GT 64687355 Upstream 29bp
chr14 64690002 64690002 1 + T C rs77065534 64690010 + 64689990 64690030 41 TGGAGAAGACTGTATTGAAGCTGAAGAAAAGGTGCATGTTA TGGAGAAGACTGCATTGAAGCTGAAGAAAAGGTGCATGTTA < 41bp 1 0.29169210973563 1 0.429901331663132 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64690010 chr14:64690002 synonymous SNV . 0 13 hm5C_associated_SNPs_10569 1 0 1 0 2 SYNE2 chr14:64689907 3'AG 64689907 Downstream 96bp
chr14 64690002 64690002 1 + T C rs77065534 64690010 + 64689990 64690030 41 TGGAGAAGACTGTATTGAAGCTGAAGAAAAGGTGCATGTTA TGGAGAAGACTGCATTGAAGCTGAAGAAAAGGTGCATGTTA < 41bp 1 0.29169210973563 1 0.429901331663132 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64690010 chr14:64690002 synonymous SNV . 0 13 hm5C_associated_SNPs_10569 1 0 1 0 2 SYNE2 chr14:64690098 5'GT 64690098 Upstream 97bp
chr14 67786979 67786979 1 + G A rs145470385 67786966 + 67786946 67786986 41 GATTATGACAACGAGGAGATCTTAACCTATGAGGAAATGTC GATTATGACAACGAGGAGATCTTAACCTATGAGAAAATGTC < 41bp 1 0.176829731541721 1 0.154739439487457 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MPP5 ENSG00000072415 CDS Human protein_coding chr14:67786966 chr14:67786979 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_10572 0 0 1 0 1 MPP5 chr14:67786947 3'AG 67786947 Downstream 33bp
chr14 68042636 68042636 1 + C T rs144520197 68042632 + 68042612 68042652 41 GACTATGAGGCTGGAGGAACCAGACGGTTGCTTTCCTCCCA GACTATGAGGCTGGAGGAACCAGATGGTTGCTTTCCTCCCA < 41bp 1 0.709831690885636 1 0.863776564598083 experiment 0.580336618228728 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68042632 chr14:68042636 nonsynonymous SNV 0.176 3 25 hm5C_associated_SNPs_10573 0 0 0 0 2 PLEKHH1 chr14:68042540 3'AG 68042540 Downstream 97bp
chr14 68042636 68042636 1 + C T rs144520197 68042632 + 68042612 68042652 41 GACTATGAGGCTGGAGGAACCAGACGGTTGCTTTCCTCCCA GACTATGAGGCTGGAGGAACCAGATGGTTGCTTTCCTCCCA < 41bp 1 0.709831690885636 1 0.863776564598083 experiment 0.580336618228728 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68042632 chr14:68042636 nonsynonymous SNV 0.176 3 25 hm5C_associated_SNPs_10573 0 0 0 0 2 PLEKHH1 chr14:68042722 5'GT 68042722 Upstream 87bp
chr14 70234042 70234042 1 + G A rs370707807 70234025 + 70234005 70234045 41 GGATCGAGGCTTCTTCATGGCCGCTCAGATCGTGAGCGGCC GGATCGAGGCTTCTTCATGGCCGCTCAGATCGTGAGCAGCC < 41bp 1 0.1987052445664 1 0.047804981470108 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LOC100289511 ENSG00000100650 UTR5 Human protein_coding chr14:70234025 chr14:70234042 . . 0 38 hm5C_associated_SNPs_10576 0 0 1 0 1 LOC100289511 chr14:70234097 5'GT 70234097 Upstream 56bp
chr14 70234042 70234042 1 + G A rs370707807 70234026 + 70234006 70234046 41 GATCGAGGCTTCTTCATGGCCGCTCAGATCGTGAGCGGCCG GATCGAGGCTTCTTCATGGCCGCTCAGATCGTGAGCAGCCG < 41bp 1 0.208962166149948 1 0.137945294380188 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LOC100289511 ENSG00000100650 UTR5 Human protein_coding chr14:70234026 chr14:70234042 . . 0 37 hm5C_associated_SNPs_10577 0 0 1 0 1 LOC100289511 chr14:70234097 5'GT 70234097 Upstream 56bp
chr14 70234042 70234042 1 + G A rs370707807 70234028 + 70234008 70234048 41 TCGAGGCTTCTTCATGGCCGCTCAGATCGTGAGCGGCCGGG TCGAGGCTTCTTCATGGCCGCTCAGATCGTGAGCAGCCGGG < 41bp 1 0.300358863163501 1 0.176522433757782 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LOC100289511 ENSG00000100650 UTR5 Human protein_coding chr14:70234028 chr14:70234042 . . 0 35 hm5C_associated_SNPs_10578 0 0 1 0 1 LOC100289511 chr14:70234097 5'GT 70234097 Upstream 56bp
chr14 70234042 70234042 1 + G A rs370707807 70234030 + 70234010 70234050 41 GAGGCTTCTTCATGGCCGCTCAGATCGTGAGCGGCCGGGGC GAGGCTTCTTCATGGCCGCTCAGATCGTGAGCAGCCGGGGC < 41bp 1 0.22881067735725 1 0.37484335899353 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LOC100289511 ENSG00000100650 UTR5 Human protein_coding chr14:70234030 chr14:70234042 . . 0 33 hm5C_associated_SNPs_10579 0 0 1 0 1 LOC100289511 chr14:70234097 5'GT 70234097 Upstream 56bp
chr14 70234042 70234042 1 + G A rs370707807 70234041 + 70234021 70234061 41 ATGGCCGCTCAGATCGTGAGCGGCCGGGGCTGCTCTCTTTG ATGGCCGCTCAGATCGTGAGCAGCCGGGGCTGCTCTCTTTG < 41bp 1 0.38783503085093 1 0.0404787361621857 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control LOC100289511 ENSG00000100650 UTR5 Human protein_coding chr14:70234041 chr14:70234042 . . 0 22 hm5C_associated_SNPs_10580 0 0 1 0 1 LOC100289511 chr14:70234097 5'GT 70234097 Upstream 56bp
chr14 70234042 70234042 1 + G A rs370707807 70234044 + 70234024 70234064 41 GCCGCTCAGATCGTGAGCGGCCGGGGCTGCTCTCTTTGCGG GCCGCTCAGATCGTGAGCAGCCGGGGCTGCTCTCTTTGCGG < 41bp 1 0.607174800697769 1 0.897131204605103 experiment 0.785650398604463 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control LOC100289511 ENSG00000100650 UTR5 Human protein_coding chr14:70234044 chr14:70234042 . . 0 19 hm5C_associated_SNPs_10581 0 0 1 0 1 LOC100289511 chr14:70234097 5'GT 70234097 Upstream 56bp
chr14 73421159 73421159 1 + A G rs117449182 73421177 + 73421157 73421197 41 ACAGTGATGTCTTGGCCCAGCAGTTTGCTCTCATGGTTGGT ACGGTGATGTCTTGGCCCAGCAGTTTGCTCTCATGGTTGGT < 41bp 1 0.166095357469385 1 0.114077687263489 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73421177 chr14:73421159 nonsynonymous SNV 0.874 3 3 hm5C_associated_SNPs_10584 0 0 0 0 2 DCAF4 chr14:73421094 3'AG 73421094 Downstream 66bp
chr14 73421159 73421159 1 + A G rs117449182 73421177 + 73421157 73421197 41 ACAGTGATGTCTTGGCCCAGCAGTTTGCTCTCATGGTTGGT ACGGTGATGTCTTGGCCCAGCAGTTTGCTCTCATGGTTGGT < 41bp 1 0.166095357469385 1 0.114077687263489 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73421177 chr14:73421159 nonsynonymous SNV 0.874 3 3 hm5C_associated_SNPs_10584 0 0 0 0 2 DCAF4 chr14:73421191 5'GT 73421191 Upstream 33bp
chr14 73421186 73421186 1 + C T rs17856583 73421177 + 73421157 73421197 41 ACAGTGATGTCTTGGCCCAGCAGTTTGCTCTCATGGTTGGT ACAGTGATGTCTTGGCCCAGCAGTTTGCTTTCATGGTTGGT < 41bp 1 0.131902645216649 1 0.20126023888588 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73421177 chr14:73421186 nonsynonymous SNV 0.233 0 30 hm5C_associated_SNPs_10585 0 0 0 0 2 DCAF4 chr14:73421094 3'AG 73421094 Downstream 93bp
chr14 73421186 73421186 1 + C T rs17856583 73421177 + 73421157 73421197 41 ACAGTGATGTCTTGGCCCAGCAGTTTGCTCTCATGGTTGGT ACAGTGATGTCTTGGCCCAGCAGTTTGCTTTCATGGTTGGT < 41bp 1 0.131902645216649 1 0.20126023888588 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73421177 chr14:73421186 nonsynonymous SNV 0.233 0 30 hm5C_associated_SNPs_10585 0 0 0 0 2 DCAF4 chr14:73421191 5'GT 73421191 Upstream 6bp
chr14 73637512 73637512 1 + A G rs200824179 73637529 + 73637509 73637549 41 ACAATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTT ACAGTAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTT < 41bp 1 0.674167786139577 1 0.319849252700806 experiment 0.651664427720847 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637529 chr14:73637512 nonsynonymous SNV 0.463 1 4 hm5C_associated_SNPs_10596 0 0 1 0 1 PSEN1 chr14:73637505 3'AG 73637505 Downstream 8bp
chr14 73637512 73637512 1 + A G rs200824179 73637531 + 73637511 73637551 41 AATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGG AGTAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGG < 41bp 1 0.665393670151478 1 0.243122190237045 experiment 0.669212659697045 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637531 chr14:73637512 nonsynonymous SNV 0.463 1 2 hm5C_associated_SNPs_10597 0 0 1 0 1 PSEN1 chr14:73637505 3'AG 73637505 Downstream 8bp
chr14 74424938 74424938 1 + T C rs3180946 74424923 + 74424903 74424943 41 CCATTTCCTATGGCCGACTCCAGCCCTTGGGTTCATATTAC CCATTTCCTATGGCCGACTCCAGCCCTTGGGTTCACATTAC < 41bp 1 0.460404331719515 1 0.155064880847931 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ6 ENSG00000119723 CDS Human protein_coding chr14:74424923 chr14:74424938 synonymous SNV . 0 36 hm5C_associated_SNPs_10599 1 0 1 0 2 COQ6 chr14:74424850 3'AG 74424850 Downstream 89bp
chr14 74424938 74424938 1 + T C rs3180946 74424923 + 74424903 74424943 41 CCATTTCCTATGGCCGACTCCAGCCCTTGGGTTCATATTAC CCATTTCCTATGGCCGACTCCAGCCCTTGGGTTCACATTAC < 41bp 1 0.460404331719515 1 0.155064880847931 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ6 ENSG00000119723 CDS Human protein_coding chr14:74424923 chr14:74424938 synonymous SNV . 0 36 hm5C_associated_SNPs_10599 1 0 1 0 2 COQ6 chr14:74424980 5'GT 74424980 Upstream 43bp
chr14 75359607 75359607 1 + G A rs201721137 75359614 + 75359594 75359634 41 AACCTACAGCAGCGGCAGTTCCTCCCCCTGCAGCACCCATA AACCTACAGCAGCAGCAGTTCCTCCCCCTGCAGCACCCATA < 41bp 1 0.10134767706142 1 0.0666942596435547 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DLST ENSG00000119689 CDS Human protein_coding chr14:75359614 chr14:75359607 synonymous SNV . 0 14 hm5C_associated_SNPs_10605 0 0 1 0 2 DLST chr14:75359537 3'AG 75359537 Downstream 71bp
chr14 75359607 75359607 1 + G A rs201721137 75359614 + 75359594 75359634 41 AACCTACAGCAGCGGCAGTTCCTCCCCCTGCAGCACCCATA AACCTACAGCAGCAGCAGTTCCTCCCCCTGCAGCACCCATA < 41bp 1 0.10134767706142 1 0.0666942596435547 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DLST ENSG00000119689 CDS Human protein_coding chr14:75359614 chr14:75359607 synonymous SNV . 0 14 hm5C_associated_SNPs_10605 0 0 1 0 2 DLST chr14:75359689 5'GT 75359689 Upstream 83bp
chr14 75359670 75359670 1 + G A rs2230237 75359687 + 75359667 75359707 41 ACAGCCTCCTTCTGGCAAACCTGGTAGGCTTCCAACTCCCA ACAACCTCCTTCTGGCAAACCTGGTAGGCTTCCAACTCCCA < 41bp 1 0.694365416993599 1 0.0704642534255981 experiment 0.611269166012802 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DLST ENSG00000119689 CDS Human protein_coding chr14:75359687 chr14:75359670 synonymous SNV . 0 4 hm5C_associated_SNPs_10606 0 0 1 1 1 DLST chr14:75359689 5'GT 75359689 Upstream 20bp
chr14 75746627 75746627 1 + G A rs76195634 75746611 + 75746591 75746631 41 GGACCTGGCCGTCTCCAGTGCCAACTTCATTCCCACGGTCA GGACCTGGCCGTCTCCAGTGCCAACTTCATTCCCACAGTCA < 41bp 1 0.056092189853388 1 0.0695299506187439 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746611 chr14:75746627 nonsynonymous SNV 0.998 0 37 hm5C_associated_SNPs_10610 0 0 0 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 48bp
chr14 75746627 75746627 1 + G A rs76195634 75746612 + 75746592 75746632 41 GACCTGGCCGTCTCCAGTGCCAACTTCATTCCCACGGTCAC GACCTGGCCGTCTCCAGTGCCAACTTCATTCCCACAGTCAC < 41bp 1 0.240566196209527 1 0.0634810328483582 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746612 chr14:75746627 nonsynonymous SNV 0.998 0 36 hm5C_associated_SNPs_10611 0 0 0 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 48bp
chr14 75746627 75746627 1 + G A rs76195634 75746615 + 75746595 75746635 41 CTGGCCGTCTCCAGTGCCAACTTCATTCCCACGGTCACTGC CTGGCCGTCTCCAGTGCCAACTTCATTCCCACAGTCACTGC < 41bp 1 0.550686930859563 1 0.329867601394653 experiment 0.898626138280874 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746615 chr14:75746627 nonsynonymous SNV 0.998 0 33 hm5C_associated_SNPs_10612 0 0 0 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 48bp
chr14 75746627 75746627 1 + G A rs76195634 75746618 + 75746598 75746638 41 GCCGTCTCCAGTGCCAACTTCATTCCCACGGTCACTGCCAT GCCGTCTCCAGTGCCAACTTCATTCCCACAGTCACTGCCAT < 41bp 1 0.0334363644046969 1 0.647949576377869 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746618 chr14:75746627 nonsynonymous SNV 0.998 0 30 hm5C_associated_SNPs_10613 0 0 0 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 48bp
chr14 75904660 75904660 1 + A G rs3625 75904659 + 75904639 75904679 41 ATCCCGGACCCTTCGGTGACCACAGGCTCCCTGCCAGGGCT ATCCCGGACCCTTCGGTGACCGCAGGCTCCCTGCCAGGGCT < 41bp 1 0.794908810235319 1 0.64088374376297 experiment 0.410182379529361 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JDP2 ENSG00000140044 CDS Human protein_coding chr14:75904659 chr14:75904660 nonsynonymous SNV 0.339 0 22 hm5C_associated_SNPs_10614 0 0 1 0 1 JDP2 chr14:75904601 3'AG 75904601 Downstream 60bp
chr14 75936049 75936049 1 + G A rs145604845 75936062 + 75936042 75936082 41 AGGAGCTGAAGCAGGAGCGGCAGCAGCTCATCCTGATGCTG AGGAGCTAAAGCAGGAGCGGCAGCAGCTCATCCTGATGCTG < 41bp 1 0.635120476748931 1 0.48528864979744 experiment 0.729759046502139 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JDP2 ENSG00000140044 CDS Human protein_coding chr14:75936062 chr14:75936049 synonymous SNV . 0 8 hm5C_associated_SNPs_10615 0 0 0 0 1 JDP2 chr14:75935993 3'AG 75935993 Downstream 57bp
chr14 75936049 75936049 1 + G A rs145604845 75936065 + 75936045 75936085 41 AGCTGAAGCAGGAGCGGCAGCAGCTCATCCTGATGCTGAAC AGCTAAAGCAGGAGCGGCAGCAGCTCATCCTGATGCTGAAC < 41bp 1 0.373246418511425 1 0.739110827445984 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JDP2 ENSG00000140044 CDS Human protein_coding chr14:75936065 chr14:75936049 synonymous SNV . 0 5 hm5C_associated_SNPs_10616 0 0 0 0 1 JDP2 chr14:75935993 3'AG 75935993 Downstream 57bp
chr14 76618278 76618278 1 + C A rs576123914 76618282 + 76618262 76618302 41 GTCAGAGAGGGAAGCCCCGGCGGTGAGAGTCGGCCCAAAAA GTCAGAGAGGGAAGCCACGGCGGTGAGAGTCGGCCCAAAAA < 41bp 1 0.783775580743748 1 0.629407167434692 experiment 0.432448838512504 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GPATCH2L ENSG00000089916 UTR5 Human protein_coding chr14:76618282 chr14:76618278 . . 0 17 hm5C_associated_SNPs_10619 0 0 1 0 2 GPATCH2L chr14:76618318 5'GT 76618318 Upstream 41bp
chr14 76618278 76618278 1 + C A rs576123914 76618282 + 76618262 76618302 41 GTCAGAGAGGGAAGCCCCGGCGGTGAGAGTCGGCCCAAAAA GTCAGAGAGGGAAGCCACGGCGGTGAGAGTCGGCCCAAAAA < 41bp 1 0.783775580743748 1 0.629407167434692 experiment 0.432448838512504 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GPATCH2L ENSG00000089916 UTR5 Human protein_coding chr14:76618282 chr14:76618278 . . 0 17 hm5C_associated_SNPs_10619 0 0 1 0 2 GPATCH2L chr14:76618334 5'GT 76618334 Upstream 57bp
chr14 76618283 76618283 1 + G T rs561794953 76618282 + 76618262 76618302 41 GTCAGAGAGGGAAGCCCCGGCGGTGAGAGTCGGCCCAAAAA GTCAGAGAGGGAAGCCCCGGCTGTGAGAGTCGGCCCAAAAA < 41bp 1 0.689894866858333 1 0.25553223490715 experiment 0.620210266283334 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GPATCH2L ENSG00000089916 UTR5 Human protein_coding chr14:76618282 chr14:76618283 . . 0 22 hm5C_associated_SNPs_10620 0 0 1 0 2 GPATCH2L chr14:76618318 5'GT 76618318 Upstream 36bp
chr14 76618283 76618283 1 + G T rs561794953 76618282 + 76618262 76618302 41 GTCAGAGAGGGAAGCCCCGGCGGTGAGAGTCGGCCCAAAAA GTCAGAGAGGGAAGCCCCGGCTGTGAGAGTCGGCCCAAAAA < 41bp 1 0.689894866858333 1 0.25553223490715 experiment 0.620210266283334 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GPATCH2L ENSG00000089916 UTR5 Human protein_coding chr14:76618282 chr14:76618283 . . 0 22 hm5C_associated_SNPs_10620 0 0 1 0 2 GPATCH2L chr14:76618334 5'GT 76618334 Upstream 52bp
chr14 76638268 76638268 1 + T G rs144422821 76638267 + 76638247 76638287 41 TAATCTTCTGCCCAAGTGGGCTCCTGATCATTGTTCTGAAG TAATCTTCTGCCCAAGTGGGCGCCTGATCATTGTTCTGAAG < 41bp 1 0.305587955474928 1 0.217246294021606 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GPATCH2L ENSG00000089916 CDS Human protein_coding chr14:76638267 chr14:76638268 synonymous SNV . 0 22 hm5C_associated_SNPs_10621 0 0 1 0 2 GPATCH2L chr14:76638186 3'AG 76638186 Downstream 83bp
chr14 76638268 76638268 1 + T G rs144422821 76638267 + 76638247 76638287 41 TAATCTTCTGCCCAAGTGGGCTCCTGATCATTGTTCTGAAG TAATCTTCTGCCCAAGTGGGCGCCTGATCATTGTTCTGAAG < 41bp 1 0.305587955474928 1 0.217246294021606 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GPATCH2L ENSG00000089916 CDS Human protein_coding chr14:76638267 chr14:76638268 synonymous SNV . 0 22 hm5C_associated_SNPs_10621 0 0 1 0 2 GPATCH2L chr14:76638362 5'GT 76638362 Upstream 95bp
chr14 78183928 78183928 1 + A G rs17106262 78183914 + 78183894 78183934 41 AAGATTTTTGAGACTGCAGCCTATTAATAAAGTTAACATAA AAGATTTTTGAGACTGCAGCCTATTAATAAAGTTGACATAA < 41bp 1 0.170483763550284 1 0.0648556053638458 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLIRP ENSG00000119705 UTR3 Human protein_coding chr14:78183914 chr14:78183928 . . 0 35 hm5C_associated_SNPs_10622 0 0 1 0 2 SLIRP chr14:78183839 3'AG 78183839 Downstream 90bp
chr14 78183928 78183928 1 + A G rs17106262 78183914 + 78183894 78183934 41 AAGATTTTTGAGACTGCAGCCTATTAATAAAGTTAACATAA AAGATTTTTGAGACTGCAGCCTATTAATAAAGTTGACATAA < 41bp 1 0.170483763550284 1 0.0648556053638458 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLIRP ENSG00000119705 UTR3 Human protein_coding chr14:78183914 chr14:78183928 . . 0 35 hm5C_associated_SNPs_10622 0 0 1 0 2 SLIRP chr14:78183845 3'AG 78183845 Downstream 84bp
chr14 90433762 90433762 1 + T C rs148474327 90433764 + 90433744 90433784 41 AAACAGTATCCACCAGAGTTCAGGTGAGTTCCTCAGGGTGA AAACAGTATCCACCAGAGCTCAGGTGAGTTCCTCAGGGTGA < 41bp 1 0.617412904782201 1 0.703882336616516 experiment 0.765174190435599 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TDP1 ENSG00000042088 CDS Human protein_coding chr14:90433764 chr14:90433762 nonsynonymous SNV 0.985 2 19 hm5C_associated_SNPs_10631 0 0 1 1 2 TDP1 chr14:90433711 3'AG 90433711 Downstream 52bp
chr14 90433762 90433762 1 + T C rs148474327 90433764 + 90433744 90433784 41 AAACAGTATCCACCAGAGTTCAGGTGAGTTCCTCAGGGTGA AAACAGTATCCACCAGAGCTCAGGTGAGTTCCTCAGGGTGA < 41bp 1 0.617412904782201 1 0.703882336616516 experiment 0.765174190435599 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TDP1 ENSG00000042088 CDS Human protein_coding chr14:90433764 chr14:90433762 nonsynonymous SNV 0.985 2 19 hm5C_associated_SNPs_10631 0 0 1 1 2 TDP1 chr14:90433766 5'GT 90433766 Upstream 5bp
chr14 93043720 93043720 1 + C T rs144699416 93043725 + 93043705 93043745 41 ATGTTCCTGGTTCGCCGGGACAGCAGCTCGAAGCAGCTGGT ATGTTCCTGGTTCGCTGGGACAGCAGCTCGAAGCAGCTGGT < 41bp 1 0.490088977297187 1 0.501998066902161 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93043725 chr14:93043720 nonsynonymous SNV 0.008 3 16 hm5C_associated_SNPs_10635 0 0 0 0 1 RIN3 chr14:93043705 3'AG 93043705 Downstream 16bp
chr14 93277899 93277899 1 + G A rs142273431 93277898 + 93277878 93277918 41 TATAAAAATTTGTCACAGAGCGAGTTTGCTGCACGCCTTAA TATAAAAATTTGTCACAGAGCAAGTTTGCTGCACGCCTTAA < 41bp 1 0.495476383783671 1 0.145311444997787 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93277898 chr14:93277899 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_10636 0 0 0 0 1 GOLGA5 chr14:93277896 3'AG 93277896 Downstream 4bp
chr14 93277918 93277918 1 + A G rs35865539 93277898 + 93277878 93277918 41 TATAAAAATTTGTCACAGAGCGAGTTTGCTGCACGCCTTAA TATAAAAATTTGTCACAGAGCGAGTTTGCTGCACGCCTTAG < 41bp 1 0.565480538640083 1 0.223114848136902 experiment 0.869038922719835 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93277898 chr14:93277918 nonsynonymous SNV 0.999 0 41 hm5C_associated_SNPs_10637 0 0 1 0 1 GOLGA5 chr14:93277896 3'AG 93277896 Downstream 23bp
chr14 94568224 94568224 1 + C G rs117094493 94568211 + 94568191 94568231 41 CAGTGCCATGGGCTTCACCTCAGTAGGAATCGCCGCATCCT CAGTGCCATGGGCTTCACCTCAGTAGGAATCGCGGCATCCT < 41bp 1 0.796080413723892 1 0.350443303585052 experiment 0.407839172552217 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFI27L1 ENSG00000165948 CDS Human protein_coding chr14:94568211 chr14:94568224 nonsynonymous SNV 0.000 0 34 hm5C_associated_SNPs_10640 0 0 1 0 2 IFI27L1 chr14:94568160 3'AG 94568160 Downstream 65bp
chr14 94568224 94568224 1 + C G rs117094493 94568211 + 94568191 94568231 41 CAGTGCCATGGGCTTCACCTCAGTAGGAATCGCCGCATCCT CAGTGCCATGGGCTTCACCTCAGTAGGAATCGCGGCATCCT < 41bp 1 0.796080413723892 1 0.350443303585052 experiment 0.407839172552217 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFI27L1 ENSG00000165948 CDS Human protein_coding chr14:94568211 chr14:94568224 nonsynonymous SNV 0.000 0 34 hm5C_associated_SNPs_10640 0 0 1 0 2 IFI27L1 chr14:94568321 5'GT 94568321 Upstream 98bp
chr14 95078780 95078780 1 + G A rs557831303 95078782 + 95078762 95078802 41 CTACATCCAGCTCCCTGAGGCAGGTAATCCATGATGTTTTA CTACATCCAGCTCCCTGAAGCAGGTAATCCATGATGTTTTA < 41bp 1 0.395601302428612 1 0.613594770431519 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control SERPINA3 ENSG00000196136 CDS Human protein_coding chr14:95078782 chr14:95078780 synonymous SNV . 0 19 hm5C_associated_SNPs_10642 0 0 1 1 1 SERPINA3 chr14:95078784 5'GT 95078784 Upstream 5bp
chr14 97018864 97018864 1 + C G rs35861551 97018858 + 97018838 97018878 41 TTGACAGCTCTCAATGACAGCAGCCTCGACTTGTCTATGGA TTGACAGCTCTCAATGACAGCAGCCTGGACTTGTCTATGGA < 41bp 1 0.26481315546889 1 0.169214189052582 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97018858 chr14:97018864 synonymous SNV . 0 27 hm5C_associated_SNPs_10645 0 0 1 0 2 PAPOLA chr14:97018817 3'AG 97018817 Downstream 48bp
chr14 97018864 97018864 1 + C G rs35861551 97018858 + 97018838 97018878 41 TTGACAGCTCTCAATGACAGCAGCCTCGACTTGTCTATGGA TTGACAGCTCTCAATGACAGCAGCCTGGACTTGTCTATGGA < 41bp 1 0.26481315546889 1 0.169214189052582 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97018858 chr14:97018864 synonymous SNV . 0 27 hm5C_associated_SNPs_10645 0 0 1 0 2 PAPOLA chr14:97018959 5'GT 97018959 Upstream 96bp
chr14 99947777 99947777 1 + C G rs149437057 99947768 + 99947748 99947788 41 CATTCCATATACAAGATGGCCGCAGTCGGCAAGGAGAGACG CATTCCATATACAAGATGGCCGCAGTCGGGAAGGAGAGACG < 41bp 1 0.520697807869971 1 0.405896693468094 experiment 0.958604384260059 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCNK ENSG00000090061 UTR5 Human protein_coding chr14:99947768 chr14:99947777 . . 0 30 hm5C_associated_SNPs_10646 0 0 1 0 1 CCNK chr14:99947816 5'GT 99947816 Upstream 40bp
chr14 99947777 99947777 1 + C G rs149437057 99947770 + 99947750 99947790 41 TTCCATATACAAGATGGCCGCAGTCGGCAAGGAGAGACGTC TTCCATATACAAGATGGCCGCAGTCGGGAAGGAGAGACGTC < 41bp 1 0.218488701390326 1 0.199762254953384 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCNK ENSG00000090061 UTR5 Human protein_coding chr14:99947770 chr14:99947777 . . 0 28 hm5C_associated_SNPs_10647 0 0 1 0 1 CCNK chr14:99947816 5'GT 99947816 Upstream 40bp
chr14 100563943 100563943 1 + G A rs3206354 100563942 + 100563922 100563962 41 AAGTAAAGAAGAGGCAACCACGTTCTCCAATGCAATGCTGT AAGTAAAGAAGAGGCAACCACATTCTCCAATGCAATGCTGT < 41bp 1 0.0226216682192824 1 0.137152075767517 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EVL ENSG00000196405 CDS Human protein_coding chr14:100563942 chr14:100563943 synonymous SNV . 0 22 hm5C_associated_SNPs_10648 0 0 0 0 1 EVL chr14:100563995 5'GT 100563995 Upstream 53bp
chr14 100610127 100610127 1 + A G rs58103906 100610126 + 100610106 100610146 41 GCCCATCCGGCGACAGAGGACAGCCAGAAGCCCAGCCAGCC GCCCATCCGGCGACAGAGGACGGCCAGAAGCCCAGCCAGCC < 41bp 1 0.421921527966578 1 0.482740074396133 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVL ENSG00000196405 UTR3 Human protein_coding chr14:100610126 chr14:100610127 . . 0 22 hm5C_associated_SNPs_10650 0 0 1 0 1 EVL chr14:100610038 3'AG 100610038 Downstream 90bp
chr14 100706186 100706186 1 + A G rs371252181 100706200 + 100706180 100706220 41 CGGGCAACAAGAAGTGGGAGCAGAAGCAGGTGCAGATCAAG CGGGCAGCAAGAAGTGGGAGCAGAAGCAGGTGCAGATCAAG < 41bp 1 0.709839205973117 1 0.818262338638306 experiment 0.580321588053767 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YY1 ENSG00000100811 CDS Human protein_coding chr14:100706200 chr14:100706186 nonsynonymous SNV 0.984 0 7 hm5C_associated_SNPs_10651 0 0 1 0 1 YY1 chr14:100706260 5'GT 100706260 Upstream 75bp
chr14 100842813 100842813 1 + G C rs562483045 100842821 + 100842801 100842841 41 CGGTCTGCCTCCGGGAGAACCGAGCGCTTCCGGTGCGTGTG CGGTCTGCCTCCCGGAGAACCGAGCGCTTCCGGTGCGTGTG < 41bp 1 0.705537010921224 1 0.762879729270935 experiment 0.588925978157552 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR25 ENSG00000140105;ENSG00000176473 UTR5 Human other chr14:100842821 chr14:100842813 . . 0 13 hm5C_associated_SNPs_10652 0 0 0 0 1 WDR25 chr14:100842841 5'GT 100842841 Upstream 29bp
chr14 100842813 100842813 1 + G C rs562483045 100842831 + 100842811 100842851 41 CCGGGAGAACCGAGCGCTTCCGGTGCGTGTGGTGAGCGGCG CCCGGAGAACCGAGCGCTTCCGGTGCGTGTGGTGAGCGGCG < 41bp 1 0.673204712960405 1 0.590130209922791 experiment 0.65359057407919 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR25 ENSG00000140105;ENSG00000176473 UTR5 Human other chr14:100842831 chr14:100842813 . . 0 3 hm5C_associated_SNPs_10653 0 0 0 0 1 WDR25 chr14:100842841 5'GT 100842841 Upstream 29bp
chr14 101296084 101296084 1 + C G rs183426957 101296099 + 101296079 101296119 41 TGCATCAGGTAGGGGCTTTGCAGAGACCATCGACGGGCTGA TGCATGAGGTAGGGGCTTTGCAGAGACCATCGACGGGCTGA < 41bp 1 0.644412437505902 1 0.859982073307037 experiment 0.711175124988196 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MEG3 ENSG00000214548 ncRNA_exonic Human lincRNA chr14:101296099 chr14:101296084 . . 0 6 hm5C_associated_SNPs_10656 0 0 1 0 2 MEG3 chr14:101296086 5'GT 101296086 Upstream 3bp
chr14 101296084 101296084 1 + C G rs183426957 101296099 + 101296079 101296119 41 TGCATCAGGTAGGGGCTTTGCAGAGACCATCGACGGGCTGA TGCATGAGGTAGGGGCTTTGCAGAGACCATCGACGGGCTGA < 41bp 1 0.644412437505902 1 0.859982073307037 experiment 0.711175124988196 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MEG3 ENSG00000214548 ncRNA_exonic Human lincRNA chr14:101296099 chr14:101296084 . . 0 6 hm5C_associated_SNPs_10656 0 0 1 0 2 MEG3 chr14:101296124 5'GT 101296124 Upstream 41bp
chr14 101296097 101296097 1 + T C rs3087916 101296099 + 101296079 101296119 41 TGCATCAGGTAGGGGCTTTGCAGAGACCATCGACGGGCTGA TGCATCAGGTAGGGGCTTCGCAGAGACCATCGACGGGCTGA < 41bp 1 0.641431528405077 1 0.803619503974915 experiment 0.717136943189847 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MEG3 ENSG00000214548 ncRNA_exonic Human lincRNA chr14:101296099 chr14:101296097 . . 0 19 hm5C_associated_SNPs_10657 0 0 1 0 1 MEG3 chr14:101296124 5'GT 101296124 Upstream 28bp
chr14 102466430 102466430 1 + G A rs34690489 102466414 + 102466394 102466434 41 GGACGACAGAGAGAAGTGTGCAAAGGCCAAGGAGGCGCTGG GGACGACAGAGAGAAGTGTGCAAAGGCCAAGGAGGCACTGG < 41bp 1 0.194248407748293 1 0.67035299539566 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466414 chr14:102466430 synonymous SNV . 0 37 hm5C_associated_SNPs_10662 5 0 1 0 1 DYNC1H1 chr14:102466481 5'GT 102466481 Upstream 52bp
chr14 102499701 102499701 1 + C T rs75075497 102499719 + 102499699 102499739 41 AACGAGGTGGAGCAGATGATCCGAGACCTGGAAGCCAGCAT AATGAGGTGGAGCAGATGATCCGAGACCTGGAAGCCAGCAT < 41bp 1 0.202471719137145 1 0.811618089675903 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102499719 chr14:102499701 synonymous SNV . 0 3 hm5C_associated_SNPs_10663 2 0 1 0 1 DYNC1H1 chr14:102499606 3'AG 102499606 Downstream 96bp
chr14 102499701 102499701 1 + C T rs75075497 102499720 + 102499700 102499740 41 ACGAGGTGGAGCAGATGATCCGAGACCTGGAAGCCAGCATC ATGAGGTGGAGCAGATGATCCGAGACCTGGAAGCCAGCATC < 41bp 1 0.505235675006609 1 0.816608428955078 experiment 0.989528649986781 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102499720 chr14:102499701 synonymous SNV . 0 2 hm5C_associated_SNPs_10664 2 0 1 0 1 DYNC1H1 chr14:102499606 3'AG 102499606 Downstream 96bp
chr14 102805187 102805187 1 + G A rs140733581 102805183 + 102805163 102805203 41 CATTAGGAATCACAGAATTCCTACGGAAGAAAGAAATACAC CATTAGGAATCACAGAATTCCTACAGAAGAAAGAAATACAC < 41bp 1 0.610905985541265 1 0.787894129753113 experiment 0.77818802891747 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102805183 chr14:102805187 nonsynonymous SNV 0.046 1 25 hm5C_associated_SNPs_10672 0 0 1 1 1 ZNF839 chr14:102805153 3'AG 102805153 Downstream 35bp
chr14 104037965 104037965 1 + A C rs143925033 104037976 + 104037956 104037996 41 AAAGGTCTCAAGATTCTGCCCTCCAAGAAAGTCTTGCCATG AAAGGTCTCCAGATTCTGCCCTCCAAGAAAGTCTTGCCATG < 41bp 1 0.667770770910967 1 0.980594396591187 experiment 0.664458458178065 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74773;RNA-BisSeq;Huh7;Control APOPT1 ENSG00000256053;ENSG00000256500 CDS Human other chr14:104037976 chr14:104037965 synonymous SNV . 0 10 hm5C_associated_SNPs_10691 0 0 1 0 1 APOPT1 chr14:104037960 3'AG 104037960 Downstream 6bp
chr14 104167545 104167545 1 + G A rs709399 104167542 + 104167522 104167562 41 CTATCTTCTCTTGCAGTGACCCCGACCTGGCCCCGCTCCAG CTATCTTCTCTTGCAGTGACCCCAACCTGGCCCCGCTCCAG < 41bp 1 0.300308595261806 1 0.2059545814991 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLC1 ENSG00000126214 UTR3 Human protein_coding chr14:104167542 chr14:104167545 . . 0 24 hm5C_associated_SNPs_10693 0 0 1 0 1 KLC1 chr14:104167538 3'AG 104167538 Downstream 8bp
chr14 104167545 104167545 1 + G A rs709399 104167543 + 104167523 104167563 41 TATCTTCTCTTGCAGTGACCCCGACCTGGCCCCGCTCCAGG TATCTTCTCTTGCAGTGACCCCAACCTGGCCCCGCTCCAGG < 41bp 1 0.0884408659690413 1 0.235670775175095 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLC1 ENSG00000126214 UTR3 Human protein_coding chr14:104167543 chr14:104167545 . . 0 23 hm5C_associated_SNPs_10694 0 0 1 0 1 KLC1 chr14:104167538 3'AG 104167538 Downstream 8bp
chr14 104167545 104167545 1 + G A rs709399 104167544 + 104167524 104167564 41 ATCTTCTCTTGCAGTGACCCCGACCTGGCCCCGCTCCAGGA ATCTTCTCTTGCAGTGACCCCAACCTGGCCCCGCTCCAGGA < 41bp 1 0.254997086732229 1 0.297566711902618 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLC1 ENSG00000126214 UTR3 Human protein_coding chr14:104167544 chr14:104167545 . . 0 22 hm5C_associated_SNPs_10695 0 0 1 0 1 KLC1 chr14:104167538 3'AG 104167538 Downstream 8bp
chr14 104167556 104167556 1 + G A rs375083845 104167542 + 104167522 104167562 41 CTATCTTCTCTTGCAGTGACCCCGACCTGGCCCCGCTCCAG CTATCTTCTCTTGCAGTGACCCCGACCTGGCCCCACTCCAG < 41bp 1 0.51096127370887 1 0.248290300369263 experiment 0.978077452582261 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLC1 ENSG00000126214 UTR3 Human protein_coding chr14:104167542 chr14:104167556 . . 0 35 hm5C_associated_SNPs_10696 0 0 1 0 1 KLC1 chr14:104167538 3'AG 104167538 Downstream 19bp
chr14 104167556 104167556 1 + G A rs375083845 104167543 + 104167523 104167563 41 TATCTTCTCTTGCAGTGACCCCGACCTGGCCCCGCTCCAGG TATCTTCTCTTGCAGTGACCCCGACCTGGCCCCACTCCAGG < 41bp 1 0.139805714245844 1 0.292084336280823 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLC1 ENSG00000126214 UTR3 Human protein_coding chr14:104167543 chr14:104167556 . . 0 34 hm5C_associated_SNPs_10697 0 0 1 0 1 KLC1 chr14:104167538 3'AG 104167538 Downstream 19bp
chr14 104167556 104167556 1 + G A rs375083845 104167544 + 104167524 104167564 41 ATCTTCTCTTGCAGTGACCCCGACCTGGCCCCGCTCCAGGA ATCTTCTCTTGCAGTGACCCCGACCTGGCCCCACTCCAGGA < 41bp 1 0.301629729814694 1 0.415646642446518 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLC1 ENSG00000126214 UTR3 Human protein_coding chr14:104167544 chr14:104167556 . . 0 33 hm5C_associated_SNPs_10698 0 0 1 0 1 KLC1 chr14:104167538 3'AG 104167538 Downstream 19bp
chr14 104167564 104167564 1 + A G rs861536 104167544 + 104167524 104167564 41 ATCTTCTCTTGCAGTGACCCCGACCTGGCCCCGCTCCAGGA ATCTTCTCTTGCAGTGACCCCGACCTGGCCCCGCTCCAGGG < 41bp 1 0.325301976895218 1 0.655885219573975 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLC1 ENSG00000126214 UTR3 Human protein_coding chr14:104167544 chr14:104167564 . . 0 41 hm5C_associated_SNPs_10699 0 0 1 0 1 KLC1 chr14:104167538 3'AG 104167538 Downstream 27bp
chr14 104565276 104565276 1 + G A rs200191130 104565260 + 104565240 104565280 41 GGTAGACGCTCGGAGGTTCGCAGCTTTCTGCTCCCCGAACC GGTAGACGCTCGGAGGTTCGCAGCTTTCTGCTCCCCAAACC < 41bp 1 0.798231881725806 1 0.630912899971008 experiment 0.403536236548388 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control ASPG ENSG00000166183 CDS Human protein_coding chr14:104565260 chr14:104565276 synonymous SNV . 0 37 hm5C_associated_SNPs_10702 0 0 0 0 2 ASPG chr14:104565190 3'AG 104565190 Downstream 87bp
chr14 104565276 104565276 1 + G A rs200191130 104565260 + 104565240 104565280 41 GGTAGACGCTCGGAGGTTCGCAGCTTTCTGCTCCCCGAACC GGTAGACGCTCGGAGGTTCGCAGCTTTCTGCTCCCCAAACC < 41bp 1 0.798231881725806 1 0.630912899971008 experiment 0.403536236548388 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control ASPG ENSG00000166183 CDS Human protein_coding chr14:104565260 chr14:104565276 synonymous SNV . 0 37 hm5C_associated_SNPs_10702 0 0 0 0 2 ASPG chr14:104565316 5'GT 104565316 Upstream 41bp
chr14 104638926 104638926 1 + G A rs2275595 104638925 + 104638905 104638945 41 CCCCTAGGCCGAAGTCTGCTCGGGGACCGTGGCCGACGTGC CCCCTAGGCCGAAGTCTGCTCAGGGACCGTGGCCGACGTGC < 41bp 1 0.705162914078277 1 0.93475067615509 experiment 0.589674171843445 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104638925 chr14:104638926 synonymous SNV . 0 22 hm5C_associated_SNPs_10703 0 0 0 0 2 KIF26A chr14:104638912 3'AG 104638912 Downstream 15bp
chr14 104638926 104638926 1 + G A rs2275595 104638925 + 104638905 104638945 41 CCCCTAGGCCGAAGTCTGCTCGGGGACCGTGGCCGACGTGC CCCCTAGGCCGAAGTCTGCTCAGGGACCGTGGCCGACGTGC < 41bp 1 0.705162914078277 1 0.93475067615509 experiment 0.589674171843445 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104638925 chr14:104638926 synonymous SNV . 0 22 hm5C_associated_SNPs_10703 0 0 0 0 2 KIF26A chr14:104639005 5'GT 104639005 Upstream 80bp
chr14 104644212 104644212 1 + A G rs61743202 104644198 + 104644178 104644218 41 GCTGCCTCCCCAGGCGCCCGCACCCGCAGCCTCAAGTCCCC GCTGCCTCCCCAGGCGCCCGCACCCGCAGCCTCAGGTCCCC < 41bp 1 0.15223897742156 1 0.0639415085315704 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104644198 chr14:104644212 nonsynonymous SNV 0.992 1 35 hm5C_associated_SNPs_10713 0 0 0 0 1 KIF26A chr14:104644235 5'GT 104644235 Upstream 24bp
chr14 105179902 105179902 1 + G A rs148541427 105179914 + 105179894 105179934 41 CGGGGGCAGCAAGGCAGCCTCCATGGATCCCCCAAGAGCCA CGGGGGCAACAAGGCAGCCTCCATGGATCCCCCAAGAGCCA < 41bp 1 0.107386901014493 1 0.210903018712997 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105179914 chr14:105179902 nonsynonymous SNV 0.001 0 9 hm5C_associated_SNPs_10714 0 0 1 0 1 INF2 chr14:105179943 5'GT 105179943 Upstream 42bp
chr14 105179902 105179902 1 + G A rs148541427 105179915 + 105179895 105179935 41 GGGGGCAGCAAGGCAGCCTCCATGGATCCCCCAAGAGCCAC GGGGGCAACAAGGCAGCCTCCATGGATCCCCCAAGAGCCAC < 41bp 1 0.575734793579006 1 0.467676520347595 experiment 0.848530412841988 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105179915 chr14:105179902 nonsynonymous SNV 0.001 0 8 hm5C_associated_SNPs_10715 0 0 1 0 1 INF2 chr14:105179943 5'GT 105179943 Upstream 42bp
chr14 105209528 105209528 1 + C T rs139545166 105209523 + 105209503 105209543 41 GCTCACATGGTCAACGGATTCACTGCGTAAGCAACCCATGC GCTCACATGGTCAACGGATTCACTGTGTAAGCAACCCATGC < 41bp 1 0.601050921705992 1 0.18995413184166 experiment 0.797898156588016 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADSSL1 ENSG00000185100 CDS Human protein_coding chr14:105209523 chr14:105209528 nonsynonymous SNV 0.978 2 26 hm5C_associated_SNPs_10722 0 0 1 0 1 ADSSL1 chr14:105209528 5'GT 105209528 Upstream 1bp
chr14 105936288 105936288 1 + C T rs149260021 105936268 + 105936248 105936288 41 CCCTGCCCCCAGTCAAGCGGCGGCGGATGAACTGGATCGAC CCCTGCCCCCAGTCAAGCGGCGGCGGATGAACTGGATCGAT < 41bp 1 0.653674594032622 1 0.74238383769989 experiment 0.692650811934757 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936268 chr14:105936288 synonymous SNV . 0 41 hm5C_associated_SNPs_10727 0 0 1 0 1 MTA1 chr14:105936329 5'GT 105936329 Upstream 42bp
chr14 105936288 105936288 1 + C T rs149260021 105936285 + 105936265 105936305 41 CGGCGGCGGATGAACTGGATCGACGCCCCGGATGACGTGTT CGGCGGCGGATGAACTGGATCGATGCCCCGGATGACGTGTT < 41bp 1 0.332720873419203 1 0.385664224624634 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936285 chr14:105936288 synonymous SNV . 0 24 hm5C_associated_SNPs_10728 0 0 1 0 1 MTA1 chr14:105936329 5'GT 105936329 Upstream 42bp
chr14 105936300 105936300 1 + C T rs147974087 105936285 + 105936265 105936305 41 CGGCGGCGGATGAACTGGATCGACGCCCCGGATGACGTGTT CGGCGGCGGATGAACTGGATCGACGCCCCGGATGATGTGTT < 41bp 1 0.489524495084624 1 0.48183286190033 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936285 chr14:105936300 synonymous SNV . 0 36 hm5C_associated_SNPs_10729 0 0 1 1 1 MTA1 chr14:105936329 5'GT 105936329 Upstream 30bp
chr14 105936300 105936300 1 + C T rs147974087 105936315 + 105936295 105936335 41 GATGACGTGTTCTACATGGCCACAGAGGAGACCAGGTGGGG GATGATGTGTTCTACATGGCCACAGAGGAGACCAGGTGGGG < 41bp 1 0.57305496424729 1 0.565023005008698 experiment 0.853890071505419 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936315 chr14:105936300 synonymous SNV . 0 6 hm5C_associated_SNPs_10730 0 0 1 1 1 MTA1 chr14:105936329 5'GT 105936329 Upstream 30bp
chr14 105936300 105936300 1 + C T rs147974087 105936317 + 105936297 105936337 41 TGACGTGTTCTACATGGCCACAGAGGAGACCAGGTGGGGCC TGATGTGTTCTACATGGCCACAGAGGAGACCAGGTGGGGCC < 41bp 1 0.659959565341124 1 0.708763301372528 experiment 0.680080869317752 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936317 chr14:105936300 synonymous SNV . 0 4 hm5C_associated_SNPs_10731 0 0 1 1 1 MTA1 chr14:105936329 5'GT 105936329 Upstream 30bp
chr14 105945110 105945110 1 + C T rs587721913 105945124 + 105945104 105945144 41 AGAAGCCCCTGGCGGAGGGGCCGCAGGTCACCGGCCCCATC AGAAGCTCCTGGCGGAGGGGCCGCAGGTCACCGGCCCCATC < 41bp 1 0.50005977417153 1 0.217069059610367 experiment 0.99988045165694 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CRIP2 ENSG00000182809 CDS Human protein_coding chr14:105945124 chr14:105945110 nonsynonymous SNV 0.386 2 7 hm5C_associated_SNPs_10732 0 0 0 0 2 CRIP2 chr14:105945068 3'AG 105945068 Downstream 43bp
chr14 105945110 105945110 1 + C T rs587721913 105945124 + 105945104 105945144 41 AGAAGCCCCTGGCGGAGGGGCCGCAGGTCACCGGCCCCATC AGAAGCTCCTGGCGGAGGGGCCGCAGGTCACCGGCCCCATC < 41bp 1 0.50005977417153 1 0.217069059610367 experiment 0.99988045165694 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CRIP2 ENSG00000182809 CDS Human protein_coding chr14:105945124 chr14:105945110 nonsynonymous SNV 0.386 2 7 hm5C_associated_SNPs_10732 0 0 0 0 2 CRIP2 chr14:105945208 5'GT 105945208 Upstream 99bp
chr14 105945110 105945110 1 + C T rs587721913 105945125 + 105945105 105945145 41 GAAGCCCCTGGCGGAGGGGCCGCAGGTCACCGGCCCCATCG GAAGCTCCTGGCGGAGGGGCCGCAGGTCACCGGCCCCATCG < 41bp 1 0.704683891950194 1 0.571418285369873 experiment 0.590632216099612 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CRIP2 ENSG00000182809 CDS Human protein_coding chr14:105945125 chr14:105945110 nonsynonymous SNV 0.386 2 6 hm5C_associated_SNPs_10733 0 0 0 0 2 CRIP2 chr14:105945068 3'AG 105945068 Downstream 43bp
chr14 105945110 105945110 1 + C T rs587721913 105945125 + 105945105 105945145 41 GAAGCCCCTGGCGGAGGGGCCGCAGGTCACCGGCCCCATCG GAAGCTCCTGGCGGAGGGGCCGCAGGTCACCGGCCCCATCG < 41bp 1 0.704683891950194 1 0.571418285369873 experiment 0.590632216099612 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CRIP2 ENSG00000182809 CDS Human protein_coding chr14:105945125 chr14:105945110 nonsynonymous SNV 0.386 2 6 hm5C_associated_SNPs_10733 0 0 0 0 2 CRIP2 chr14:105945208 5'GT 105945208 Upstream 99bp
chr14 105958010 105958010 1 + G T rs587675709 105958028 + 105958008 105958048 41 CGGGCAACGCCTTGGCATCGCTCGCCCTGGGTAAGCCCCGC CGTGCAACGCCTTGGCATCGCTCGCCCTGGGTAAGCCCCGC < 41bp 1 0.659084072916005 1 0.0947177410125732 experiment 0.68183185416799 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105958028 chr14:105958010 nonsynonymous SNV 0.000 0 3 hm5C_associated_SNPs_10734 0 0 1 0 2 C14orf80 chr14:105957959 3'AG 105957959 Downstream 52bp
chr14 105958010 105958010 1 + G T rs587675709 105958028 + 105958008 105958048 41 CGGGCAACGCCTTGGCATCGCTCGCCCTGGGTAAGCCCCGC CGTGCAACGCCTTGGCATCGCTCGCCCTGGGTAAGCCCCGC < 41bp 1 0.659084072916005 1 0.0947177410125732 experiment 0.68183185416799 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105958028 chr14:105958010 nonsynonymous SNV 0.000 0 3 hm5C_associated_SNPs_10734 0 0 1 0 2 C14orf80 chr14:105958037 5'GT 105958037 Upstream 28bp
chr14 105958034 105958034 1 + C G rs373402464 105958028 + 105958008 105958048 41 CGGGCAACGCCTTGGCATCGCTCGCCCTGGGTAAGCCCCGC CGGGCAACGCCTTGGCATCGCTCGCCGTGGGTAAGCCCCGC < 41bp 1 0.659676457586206 1 0.0920794606208801 experiment 0.680647084827588 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105958028 chr14:105958034 nonsynonymous SNV 0.536 0 27 hm5C_associated_SNPs_10735 0 0 1 0 2 C14orf80 chr14:105957959 3'AG 105957959 Downstream 76bp
chr14 105958034 105958034 1 + C G rs373402464 105958028 + 105958008 105958048 41 CGGGCAACGCCTTGGCATCGCTCGCCCTGGGTAAGCCCCGC CGGGCAACGCCTTGGCATCGCTCGCCGTGGGTAAGCCCCGC < 41bp 1 0.659676457586206 1 0.0920794606208801 experiment 0.680647084827588 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105958028 chr14:105958034 nonsynonymous SNV 0.536 0 27 hm5C_associated_SNPs_10735 0 0 1 0 2 C14orf80 chr14:105958037 5'GT 105958037 Upstream 4bp
chr14 105964270 105964270 1 + C T rs144028188 105964280 + 105964260 105964300 41 GGAGGAGGAGCTGCGGGAGGCTGCGGAGCGCAGGCGGGCGG GGAGGAGGAGTTGCGGGAGGCTGCGGAGCGCAGGCGGGCGG < 41bp 1 0.775779634273438 1 0.745993316173553 experiment 0.448440731453124 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105964280 chr14:105964270 synonymous SNV . 0 11 hm5C_associated_SNPs_10736 0 0 1 0 1 C14orf80 chr14:105964314 5'GT 105964314 Upstream 45bp
chr15 22863001 22863001 1 + A G rs17137283 22863000 + 22862980 22863020 41 TGATGTATGTGTGGATAGATCATCGGAATCTGTGACATGCC TGATGTATGTGTGGATAGATCGTCGGAATCTGTGACATGCC < 41bp 1 0.527700534210946 1 0.217714786529541 experiment 0.944598931578109 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBGCP5 ENSG00000153575 CDS Human other chr15:22863000 chr15:22863001 synonymous SNV . 0 22 hm5C_associated_SNPs_10737 0 0 1 0 1 TUBGCP5 chr15:22862935 3'AG 22862935 Downstream 67bp
chr15 22940776 22940776 1 + G A rs139045862 22940756 + 22940736 22940776 41 GCACATCCTCCGGCAGCAGCCCTCAGTACAACATCTGCGAG GCACATCCTCCGGCAGCAGCCCTCAGTACAACATCTGCGAA < 41bp 1 0.356339304058767 1 0.282314956188202 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22940756 chr15:22940776 synonymous SNV . 0 41 hm5C_associated_SNPs_10738 0 0 1 0 2 CYFIP1 chr15:22940728 3'AG 22940728 Downstream 49bp
chr15 22940776 22940776 1 + G A rs139045862 22940756 + 22940736 22940776 41 GCACATCCTCCGGCAGCAGCCCTCAGTACAACATCTGCGAG GCACATCCTCCGGCAGCAGCCCTCAGTACAACATCTGCGAA < 41bp 1 0.356339304058767 1 0.282314956188202 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22940756 chr15:22940776 synonymous SNV . 0 41 hm5C_associated_SNPs_10738 0 0 1 0 2 CYFIP1 chr15:22940845 5'GT 22940845 Upstream 70bp
chr15 22958334 22958334 1 + G A rs138234345 22958333 + 22958313 22958353 41 CCTGGAGACCAAGGAGGCATCGATGATGGAGTGCGTGTCCT CCTGGAGACCAAGGAGGCATCAATGATGGAGTGCGTGTCCT < 41bp 1 0.484298596956549 1 0.206998497247696 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22958333 chr15:22958334 synonymous SNV . 0 22 hm5C_associated_SNPs_10739 0 0 1 0 1 CYFIP1 chr15:22958342 5'GT 22958342 Upstream 9bp
chr15 22962518 22962518 1 + C T rs141106211 22962534 + 22962514 22962554 41 GCTACGAGACGCTGCTGAAGCAGAGGCATGTGCAGGTGAGC GCTATGAGACGCTGCTGAAGCAGAGGCATGTGCAGGTGAGC < 41bp 1 0.687863133461471 1 0.830853223800659 experiment 0.624273733077058 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22962534 chr15:22962518 synonymous SNV . 0 5 hm5C_associated_SNPs_10740 0 0 1 0 2 CYFIP1 chr15:22962440 3'AG 22962440 Downstream 79bp
chr15 22962518 22962518 1 + C T rs141106211 22962534 + 22962514 22962554 41 GCTACGAGACGCTGCTGAAGCAGAGGCATGTGCAGGTGAGC GCTATGAGACGCTGCTGAAGCAGAGGCATGTGCAGGTGAGC < 41bp 1 0.687863133461471 1 0.830853223800659 experiment 0.624273733077058 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22962534 chr15:22962518 synonymous SNV . 0 5 hm5C_associated_SNPs_10740 0 0 1 0 2 CYFIP1 chr15:22962548 5'GT 22962548 Upstream 31bp
chr15 22969225 22969225 1 + G A rs562750082 22969231 + 22969211 22969251 41 AGCCGGTACCTGACGCTGGACGGCTTCGACGCCATGTTCCG AGCCGGTACCTGACACTGGACGGCTTCGACGCCATGTTCCG < 41bp 1 0.487098946226293 1 0.0854663252830505 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22969231 chr15:22969225 synonymous SNV . 0 15 hm5C_associated_SNPs_10741 0 0 1 0 1 CYFIP1 chr15:22969163 3'AG 22969163 Downstream 63bp
chr15 22969232 22969232 1 + G A rs7170637 22969231 + 22969211 22969251 41 AGCCGGTACCTGACGCTGGACGGCTTCGACGCCATGTTCCG AGCCGGTACCTGACGCTGGACAGCTTCGACGCCATGTTCCG < 41bp 1 0.438716473707425 1 0.126876264810562 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22969231 chr15:22969232 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_10742 0 1 1 0 1 CYFIP1 chr15:22969163 3'AG 22969163 Downstream 70bp
chr15 22969233 22969233 1 + G A rs17137190 22969231 + 22969211 22969251 41 AGCCGGTACCTGACGCTGGACGGCTTCGACGCCATGTTCCG AGCCGGTACCTGACGCTGGACGACTTCGACGCCATGTTCCG < 41bp 1 0.352950069152402 1 0.137651950120926 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22969231 chr15:22969233 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_10743 0 0 1 0 1 CYFIP1 chr15:22969163 3'AG 22969163 Downstream 71bp
chr15 22993121 22993121 1 + C T rs149042952 22993125 + 22993105 22993145 41 CGGGAGGTGGGGAACGCCATCCTCTTCTGCCTGCTCATCGA CGGGAGGTGGGGAACGTCATCCTCTTCTGCCTGCTCATCGA < 41bp 1 0.300351277833911 1 0.103889912366867 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22993125 chr15:22993121 nonsynonymous SNV . 0 17 hm5C_associated_SNPs_10744 0 0 1 0 1 CYFIP1 chr15:22993025 3'AG 22993025 Downstream 97bp
chr15 22993121 22993121 1 + C T rs149042952 22993126 + 22993106 22993146 41 GGGAGGTGGGGAACGCCATCCTCTTCTGCCTGCTCATCGAG GGGAGGTGGGGAACGTCATCCTCTTCTGCCTGCTCATCGAG < 41bp 1 0.432658948725336 1 0.38850873708725 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22993126 chr15:22993121 nonsynonymous SNV . 0 16 hm5C_associated_SNPs_10745 0 0 1 0 1 CYFIP1 chr15:22993025 3'AG 22993025 Downstream 97bp
chr15 25213188 25213188 1 + C T rs556831171 25213171 + 25213151 25213191 41 GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCTATA < 41bp 1 0.779061547855264 1 0.450905919075012 experiment 0.441876904289471 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG14 ENSG00000128739;ENSG00000214265;ENSG00000273173 UTR5;UTR3 Human other chr15:25213171 chr15:25213188 . . 0 38 hm5C_associated_SNPs_10748 0 0 1 4 1 SNHG14 chr15:25213229 5'GT 25213229 Upstream 42bp
chr15 28912596 28912596 1 + G A rs28410904 28912607 + 28912587 28912627 41 CGGGAATGCGTCCGGCTTGCCTGGTACTTCGTTTTCCTGGC CGGGAATGCATCCGGCTTGCCTGGTACTTCGTTTTCCTGGC < 41bp 1 0.702719912998445 1 0.328834295272827 experiment 0.59456017400311 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28912607 chr15:28912596 . . 0 10 hm5C_associated_SNPs_10749 0 0 0 0 1 HERC2P9 chr15:28912609 5'GT 28912609 Upstream 14bp
chr15 28912600 28912600 1 + G A rs2934043 28912607 + 28912587 28912627 41 CGGGAATGCGTCCGGCTTGCCTGGTACTTCGTTTTCCTGGC CGGGAATGCGTCCAGCTTGCCTGGTACTTCGTTTTCCTGGC < 41bp 1 0.689682821041591 1 0.245531111955643 experiment 0.620634357916818 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28912607 chr15:28912600 . . 0 14 hm5C_associated_SNPs_10750 0 0 0 0 1 HERC2P9 chr15:28912609 5'GT 28912609 Upstream 10bp
chr15 29385285 29385285 1 + G A rs144741312 29385286 + 29385266 29385306 41 GCCCTCCTTCAGTTCCAGGGCCCTGCGAACCAGAAGACCTC GCCCTCCTTCAGTTCCAGGACCCTGCGAACCAGAAGACCTC < 41bp 1 0.080108097995025 1 0.187064170837402 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APBA2 ENSG00000034053 CDS Human protein_coding chr15:29385286 chr15:29385285 synonymous SNV . 0 20 hm5C_associated_SNPs_10757 0 0 1 0 1 APBA2 chr15:29385278 3'AG 29385278 Downstream 8bp
chr15 31221574 31221574 1 + C T rs117225217 31221554 + 31221534 31221574 41 TGAGCAGGAAGGCAGAGTGGCTTCCCTTGTCAGCTGGGATC TGAGCAGGAAGGCAGAGTGGCTTCCCTTGTCAGCTGGGATT < 41bp 1 0.165102830736792 1 0.0254212915897369 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAN1 ENSG00000198690 CDS Human protein_coding chr15:31221554 chr15:31221574 nonsynonymous SNV 0.918 5 41 hm5C_associated_SNPs_10758 0 0 1 0 1 FAN1 chr15:31221600 5'GT 31221600 Upstream 27bp
chr15 36989578 36989578 1 + C A rs117638434 36989560 + 36989540 36989580 41 CATGAGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAACCT CATGAGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAAACT < 41bp 1 0.196386634002848 1 0.15148937702179 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989560 chr15:36989578 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_10766 0 0 1 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 55bp
chr15 36989578 36989578 1 + C A rs117638434 36989560 + 36989540 36989580 41 CATGAGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAACCT CATGAGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAAACT < 41bp 1 0.196386634002848 1 0.15148937702179 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989560 chr15:36989578 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_10766 0 0 1 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 14bp
chr15 36989578 36989578 1 + C A rs117638434 36989564 + 36989544 36989584 41 AGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAACCTGTCC AGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAAACTGTCC < 41bp 1 0.149778734193043 1 0.0426648557186127 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989564 chr15:36989578 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_10767 0 0 1 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 55bp
chr15 36989578 36989578 1 + C A rs117638434 36989564 + 36989544 36989584 41 AGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAACCTGTCC AGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAAACTGTCC < 41bp 1 0.149778734193043 1 0.0426648557186127 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989564 chr15:36989578 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_10767 0 0 1 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 14bp
chr15 36989578 36989578 1 + C A rs117638434 36989579 + 36989559 36989599 41 ACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTAT ACTTGCTTCTAGAGAAAAAACTGTCCTTCCTAGGTAAGTAT < 41bp 1 0.243412230171038 1 0.0572905540466309 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989579 chr15:36989578 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_10768 0 0 1 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 55bp
chr15 36989578 36989578 1 + C A rs117638434 36989579 + 36989559 36989599 41 ACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTAT ACTTGCTTCTAGAGAAAAAACTGTCCTTCCTAGGTAAGTAT < 41bp 1 0.243412230171038 1 0.0572905540466309 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989579 chr15:36989578 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_10768 0 0 1 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 14bp
chr15 36989578 36989578 1 + C A rs117638434 36989584 + 36989564 36989604 41 CTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTC CTTCTAGAGAAAAAACTGTCCTTCCTAGGTAAGTATTATTC < 41bp 1 0.111410716184075 1 0.0961554944515228 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989584 chr15:36989578 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_10769 0 0 1 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 55bp
chr15 36989578 36989578 1 + C A rs117638434 36989584 + 36989564 36989604 41 CTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTC CTTCTAGAGAAAAAACTGTCCTTCCTAGGTAAGTATTATTC < 41bp 1 0.111410716184075 1 0.0961554944515228 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989584 chr15:36989578 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_10769 0 0 1 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 14bp
chr15 36989578 36989578 1 + C A rs117638434 36989587 + 36989567 36989607 41 CTAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTCACA CTAGAGAAAAAACTGTCCTTCCTAGGTAAGTATTATTCACA < 41bp 1 0.0826370778576088 1 0.186193138360977 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989587 chr15:36989578 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_10770 0 0 1 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 55bp
chr15 36989578 36989578 1 + C A rs117638434 36989587 + 36989567 36989607 41 CTAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTCACA CTAGAGAAAAAACTGTCCTTCCTAGGTAAGTATTATTCACA < 41bp 1 0.0826370778576088 1 0.186193138360977 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989587 chr15:36989578 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_10770 0 0 1 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 14bp
chr15 36989578 36989578 1 + C A rs117638434 36989588 + 36989568 36989608 41 TAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTCACAT TAGAGAAAAAACTGTCCTTCCTAGGTAAGTATTATTCACAT < 41bp 1 0.762847397841296 1 0.834668517112732 experiment 0.474305204317409 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989588 chr15:36989578 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_10771 0 0 1 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 55bp
chr15 36989578 36989578 1 + C A rs117638434 36989588 + 36989568 36989608 41 TAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTCACAT TAGAGAAAAAACTGTCCTTCCTAGGTAAGTATTATTCACAT < 41bp 1 0.762847397841296 1 0.834668517112732 experiment 0.474305204317409 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989588 chr15:36989578 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_10771 0 0 1 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 14bp
chr15 39887649 39887649 1 + C T rs1051442 39887667 + 39887647 39887687 41 AACCCCCAGGATCACTTCTCCTTGGCTTCCTTCTTTTCTGT AATCCCCAGGATCACTTCTCCTTGGCTTCCTTCTTTTCTGT < 41bp 1 0.34708853157949 1 0.216459929943085 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient THBS1 ENSG00000137801 UTR3 Human protein_coding chr15:39887667 chr15:39887649 . . 0 3 hm5C_associated_SNPs_10782 0 0 1 0 1 THBS1 chr15:39887563 3'AG 39887563 Downstream 87bp
chr15 40477831 40477831 1 + G A rs1801376 40477830 + 40477810 40477850 41 CATATGTGGAAGAGACTGCACGACAGCCAGTTATGTGAGTG CATATGTGGAAGAGACTGCACAACAGCCAGTTATGTGAGTG < 41bp 1 0.688096089231932 1 0.16503581404686 experiment 0.623807821536136 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BUB1B ENSG00000156970 CDS Human protein_coding chr15:40477830 chr15:40477831 nonsynonymous SNV 0.977 0 22 hm5C_associated_SNPs_10788 2 0 1 0 2 BUB1B chr15:40477752 3'AG 40477752 Downstream 80bp
chr15 40477831 40477831 1 + G A rs1801376 40477830 + 40477810 40477850 41 CATATGTGGAAGAGACTGCACGACAGCCAGTTATGTGAGTG CATATGTGGAAGAGACTGCACAACAGCCAGTTATGTGAGTG < 41bp 1 0.688096089231932 1 0.16503581404686 experiment 0.623807821536136 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BUB1B ENSG00000156970 CDS Human protein_coding chr15:40477830 chr15:40477831 nonsynonymous SNV 0.977 0 22 hm5C_associated_SNPs_10788 2 0 1 0 2 BUB1B chr15:40477843 5'GT 40477843 Upstream 13bp
chr15 40509803 40509803 1 + G A rs143232848 40509796 + 40509776 40509816 41 GTGCAGCTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGT GTGCAGCTGGATGTTTTTACCCTCAGCAGCTTTCGGACTGT < 41bp 1 0.316488314543092 1 0.111525177955627 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BUB1B ENSG00000156970;ENSG00000259288 CDS Human other chr15:40509796 chr15:40509803 nonsynonymous SNV 0.985 2 28 hm5C_associated_SNPs_10789 1 0 1 0 1 BUB1B chr15:40509868 5'GT 40509868 Upstream 66bp
chr15 40509803 40509803 1 + G A rs143232848 40509802 + 40509782 40509822 41 CTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGTACAGAT CTGGATGTTTTTACCCTCAGCAGCTTTCGGACTGTACAGAT < 41bp 1 0.3273606563556 1 0.389248043298721 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BUB1B ENSG00000156970;ENSG00000259288 CDS Human other chr15:40509802 chr15:40509803 nonsynonymous SNV 0.985 2 22 hm5C_associated_SNPs_10790 1 0 1 0 1 BUB1B chr15:40509868 5'GT 40509868 Upstream 66bp
chr15 40708545 40708545 1 + C T rs372504234 40708548 + 40708528 40708568 41 ACACAGGTAGCCCTGGACGGCATTCAGTGTTTTGGTGAGTG ACACAGGTAGCCCTGGATGGCATTCAGTGTTTTGGTGAGTG < 41bp 1 0.0658834337050676 1 0.0254197418689728 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IVD ENSG00000128928 CDS Human protein_coding chr15:40708548 chr15:40708545 synonymous SNV . 0 18 hm5C_associated_SNPs_10794 0 0 1 0 2 IVD chr15:40708489 3'AG 40708489 Downstream 57bp
chr15 40708545 40708545 1 + C T rs372504234 40708548 + 40708528 40708568 41 ACACAGGTAGCCCTGGACGGCATTCAGTGTTTTGGTGAGTG ACACAGGTAGCCCTGGATGGCATTCAGTGTTTTGGTGAGTG < 41bp 1 0.0658834337050676 1 0.0254197418689728 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IVD ENSG00000128928 CDS Human protein_coding chr15:40708548 chr15:40708545 synonymous SNV . 0 18 hm5C_associated_SNPs_10794 0 0 1 0 2 IVD chr15:40708561 5'GT 40708561 Upstream 17bp
chr15 40862064 40862064 1 + C G rs1058734 40862046 + 40862026 40862066 41 CACGTCTTCAGTACCGAGTTCCGAGCTCAGCCCCTGGCCTA CACGTCTTCAGTACCGAGTTCCGAGCTCAGCCCCTGGCGTA < 41bp 1 0.310158887397149 1 0.464965254068375 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPUSD2 ENSG00000166133 CDS Human protein_coding chr15:40862046 chr15:40862064 synonymous SNV . 0 39 hm5C_associated_SNPs_10797 0 0 1 0 1 RPUSD2 chr15:40862142 5'GT 40862142 Upstream 79bp
chr15 40862064 40862064 1 + C G rs1058734 40862047 + 40862027 40862067 41 ACGTCTTCAGTACCGAGTTCCGAGCTCAGCCCCTGGCCTAC ACGTCTTCAGTACCGAGTTCCGAGCTCAGCCCCTGGCGTAC < 41bp 1 0.503111859827424 1 0.853866755962372 experiment 0.993776280345152 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPUSD2 ENSG00000166133 CDS Human protein_coding chr15:40862047 chr15:40862064 synonymous SNV . 0 38 hm5C_associated_SNPs_10798 0 0 1 0 1 RPUSD2 chr15:40862142 5'GT 40862142 Upstream 79bp
chr15 40898643 40898643 1 + G C rs7177192 40898648 + 40898628 40898668 41 GAGGTGGGAATGAAAGAGTTCAGGTAAGTCTTTTGTGCAAA GAGGTGGGAATGAAACAGTTCAGGTAAGTCTTTTGTGCAAA < 41bp 1 0.541190442095034 1 0.35553839802742 experiment 0.917619115809933 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KNL1 ENSG00000137812 CDS Human protein_coding chr15:40898648 chr15:40898643 nonsynonymous SNV 0.891 0 16 hm5C_associated_SNPs_10800 2 0 1 0 2 KNL1 chr15:40898591 3'AG 40898591 Downstream 53bp
chr15 40898643 40898643 1 + G C rs7177192 40898648 + 40898628 40898668 41 GAGGTGGGAATGAAAGAGTTCAGGTAAGTCTTTTGTGCAAA GAGGTGGGAATGAAACAGTTCAGGTAAGTCTTTTGTGCAAA < 41bp 1 0.541190442095034 1 0.35553839802742 experiment 0.917619115809933 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KNL1 ENSG00000137812 CDS Human protein_coding chr15:40898648 chr15:40898643 nonsynonymous SNV 0.891 0 16 hm5C_associated_SNPs_10800 2 0 1 0 2 KNL1 chr15:40898650 5'GT 40898650 Upstream 8bp
chr15 41554991 41554991 1 + T C rs145600828 41554985 + 41554965 41555005 41 TAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCGC TAAACTTCCGTGGATTCATGCGAACTCTGGCTCATTTCCGC < 41bp 1 0.220174249956939 1 0.215774059295654 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHP1 ENSG00000187446 CDS Human protein_coding chr15:41554985 chr15:41554991 synonymous SNV . 0 27 hm5C_associated_SNPs_10809 0 0 1 0 2 CHP1 chr15:41554954 3'AG 41554954 Downstream 38bp
chr15 41554991 41554991 1 + T C rs145600828 41554985 + 41554965 41555005 41 TAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCGC TAAACTTCCGTGGATTCATGCGAACTCTGGCTCATTTCCGC < 41bp 1 0.220174249956939 1 0.215774059295654 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHP1 ENSG00000187446 CDS Human protein_coding chr15:41554985 chr15:41554991 synonymous SNV . 0 27 hm5C_associated_SNPs_10809 0 0 1 0 2 CHP1 chr15:41555081 5'GT 41555081 Upstream 91bp
chr15 41571609 41571609 1 + C A rs141877975 41571595 + 41571575 41571615 41 ATTTCTTCACTAAAGGAGACCAAACTGTTCCTTGCGGTCTA ATTTCTTCACTAAAGGAGACCAAACTGTTCCTTGAGGTCTA < 41bp 1 0.183097768273294 1 0.136694014072418 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CHP1 ENSG00000187446 UTR3 Human protein_coding chr15:41571595 chr15:41571609 . . 0 35 hm5C_associated_SNPs_10810 0 0 0 0 1 CHP1 chr15:41571534 3'AG 41571534 Downstream 76bp
chr15 41571613 41571613 1 + C T rs147120669 41571595 + 41571575 41571615 41 ATTTCTTCACTAAAGGAGACCAAACTGTTCCTTGCGGTCTA ATTTCTTCACTAAAGGAGACCAAACTGTTCCTTGCGGTTTA < 41bp 1 0.194700138760234 1 0.106640517711639 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CHP1 ENSG00000187446 UTR3 Human protein_coding chr15:41571595 chr15:41571613 . . 0 39 hm5C_associated_SNPs_10811 0 0 1 1 1 CHP1 chr15:41571534 3'AG 41571534 Downstream 80bp
chr15 41576228 41576228 1 + A G rs548200821 41576209 + 41576189 41576229 41 GGGTTGGCCACCTTGAGAAGCTGCGAAGATGGCGGAGTAAG GGGTTGGCCACCTTGAGAAGCTGCGAAGATGGCGGAGTAGG < 41bp 1 0.736711683364803 1 0.411794185638428 experiment 0.526576633270395 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OIP5-AS1 ENSG00000247556 ncRNA_exonic Human processed_transcript chr15:41576209 chr15:41576228 . . 0 40 hm5C_associated_SNPs_10812 0 0 1 0 1 OIP5-AS1 chr15:41576308 5'GT 41576308 Upstream 81bp
chr15 41672384 41672384 1 + A G rs7168431 41672364 + 41672344 41672384 41 TTTTGGGAATGCGAAGGGGCCTCATTTTGGCTGAAGATTAA TTTTGGGAATGCGAAGGGGCCTCATTTTGGCTGAAGATTAG < 41bp 1 0.314000967131221 1 0.0690795481204987 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUSAP1 ENSG00000137804 CDS Human protein_coding chr15:41672364 chr15:41672384 synonymous SNV . 0 41 hm5C_associated_SNPs_10817 0 0 1 0 1 NUSAP1 chr15:41672291 3'AG 41672291 Downstream 94bp
chr15 41854885 41854885 1 + C G rs56363203 41854884 + 41854864 41854904 41 AACTACGAAGATCGGGGGACCCGCTCCCTCTCCATCTGTTT AACTACGAAGATCGGGGGACCGGCTCCCTCTCCATCTGTTT < 41bp 1 0.181486392407202 1 0.218768626451492 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41854884 chr15:41854885 synonymous SNV . 0 22 hm5C_associated_SNPs_10824 0 0 0 0 1 TYRO3 chr15:41854916 5'GT 41854916 Upstream 32bp
chr15 42579984 42579984 1 + G A rs16973008 42579991 + 42579971 42580011 41 GATTTGAAGTTCCGGATGTCCTCACAAGCAAGCCAAGCACT GATTTGAAGTTCCAGATGTCCTCACAAGCAAGCCAAGCACT < 41bp 1 0.213339644547194 1 0.113998740911484 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GANC ENSG00000214013 CDS Human protein_coding chr15:42579991 chr15:42579984 synonymous SNV . 0 14 hm5C_associated_SNPs_10828 0 0 0 0 2 GANC chr15:42579889 3'AG 42579889 Downstream 96bp
chr15 42579984 42579984 1 + G A rs16973008 42579991 + 42579971 42580011 41 GATTTGAAGTTCCGGATGTCCTCACAAGCAAGCCAAGCACT GATTTGAAGTTCCAGATGTCCTCACAAGCAAGCCAAGCACT < 41bp 1 0.213339644547194 1 0.113998740911484 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GANC ENSG00000214013 CDS Human protein_coding chr15:42579991 chr15:42579984 synonymous SNV . 0 14 hm5C_associated_SNPs_10828 0 0 0 0 2 GANC chr15:42580016 5'GT 42580016 Upstream 33bp
chr15 43632490 43632490 1 + G T rs372787096 43632491 + 43632471 43632511 41 AGATGTCATAAAAGAATTTGCAGATGACGGCGTCAAGTACC AGATGTCATAAAAGAATTTTCAGATGACGGCGTCAAGTACC < 41bp 1 0.557494129261281 1 0.566618800163269 experiment 0.885011741477439 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ADAL ENSG00000168803 CDS Human protein_coding chr15:43632491 chr15:43632490 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_10832 0 0 1 0 1 ADAL chr15:43632550 5'GT 43632550 Upstream 61bp
chr15 43632498 43632498 1 + C T rs201947910 43632491 + 43632471 43632511 41 AGATGTCATAAAAGAATTTGCAGATGACGGCGTCAAGTACC AGATGTCATAAAAGAATTTGCAGATGATGGCGTCAAGTACC < 41bp 1 0.451763302050245 1 0.494767069816589 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ADAL ENSG00000168803 CDS Human protein_coding chr15:43632491 chr15:43632498 synonymous SNV . 0 28 hm5C_associated_SNPs_10833 0 0 1 0 1 ADAL chr15:43632550 5'GT 43632550 Upstream 53bp
chr15 44673140 44673140 1 + G T rs140734894 44673143 + 44673123 44673163 41 CTAAAGCAGGCTACCAAGGACAGAGTCAGTGATTTCCATAA CTAAAGCAGGCTACCAATGACAGAGTCAGTGATTTCCATAA < 41bp 1 0.626766615860074 1 0.394106030464172 experiment 0.746466768279853 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CASC4 ENSG00000166734 CDS Human protein_coding chr15:44673143 chr15:44673140 nonsynonymous SNV 0.992 3 18 hm5C_associated_SNPs_10849 0 0 1 0 1 CASC4 chr15:44673174 5'GT 44673174 Upstream 35bp
chr15 45009903 45009903 1 + G A rs576157768 45009886 + 45009866 45009906 41 TTGATATGCTTATACACTTACACTTTATGCACAAAATGTAG TTGATATGCTTATACACTTACACTTTATGCACAAAATATAG < 41bp 1 0.0762510505124751 1 0.0853982269763947 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control B2M ENSG00000166710 splicing Human protein_coding chr15:45009886 chr15:45009903 . . 0 38 hm5C_associated_SNPs_10851 0 0 1 0 1 B2M chr15:45009805 3'AG 45009805 Downstream 99bp
chr15 45427468 45427468 1 + T C rs58074044 45427487 + 45427467 45427507 41 GTCCCAGCAATCCCCGGGACCCGGTGAGGCGGGGAAGGCGG GCCCCAGCAATCCCCGGGACCCGGTGAGGCGGGGAAGGCGG < 41bp 1 0.482927703047277 1 0.451162904500961 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45427487 chr15:45427468 synonymous SNV . 0 2 hm5C_associated_SNPs_10852 0 0 0 0 1 DUOX1 chr15:45427489 5'GT 45427489 Upstream 22bp
chr15 45427477 45427477 1 + T C rs113882937 45427487 + 45427467 45427507 41 GTCCCAGCAATCCCCGGGACCCGGTGAGGCGGGGAAGGCGG GTCCCAGCAACCCCCGGGACCCGGTGAGGCGGGGAAGGCGG < 41bp 1 0.462138219966657 1 0.390214711427689 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45427487 chr15:45427477 synonymous SNV . 0 11 hm5C_associated_SNPs_10853 0 0 0 0 1 DUOX1 chr15:45427489 5'GT 45427489 Upstream 13bp
chr15 45427488 45427488 1 + C T rs201314048 45427487 + 45427467 45427507 41 GTCCCAGCAATCCCCGGGACCCGGTGAGGCGGGGAAGGCGG GTCCCAGCAATCCCCGGGACCTGGTGAGGCGGGGAAGGCGG < 41bp 1 0.691672676208703 1 0.311498761177063 experiment 0.616654647582594 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45427487 chr15:45427488 nonsynonymous SNV 0.990 0 22 hm5C_associated_SNPs_10854 0 0 0 0 1 DUOX1 chr15:45427489 5'GT 45427489 Upstream 2bp
chr15 50789423 50789423 1 + G A rs11857513 50789404 + 50789384 50789424 41 AGAAATCTGGAAGTTACCACCTGTGCTTTTAGTGCATCTGA AGAAATCTGGAAGTTACCACCTGTGCTTTTAGTGCATCTAA < 41bp 1 0.325185221829601 1 0.369677722454071 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control USP8 ENSG00000138592 CDS Human protein_coding chr15:50789404 chr15:50789423 synonymous SNV . 0 40 hm5C_associated_SNPs_10860 0 0 0 0 1 USP8 chr15:50789428 5'GT 50789428 Upstream 6bp
chr15 52338070 52338070 1 + G A rs149313769 52338086 + 52338066 52338106 41 TTGTGGTGAGCTGGAGCCACCTGATCACTAACAAAAGACAT TTGTAGTGAGCTGGAGCCACCTGATCACTAACAAAAGACAT < 41bp 1 0.436444675018115 1 0.204759299755096 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK6 ENSG00000069956 UTR5 Human protein_coding chr15:52338086 chr15:52338070 . . 0 5 hm5C_associated_SNPs_10861 0 0 0 0 1 MAPK6 chr15:52338027 3'AG 52338027 Downstream 44bp
chr15 57545643 57545643 1 + G A rs143889768 57545632 + 57545612 57545652 41 CAATTCAAACTATGGAGGATCAAGCCTTGTTGCAAGCAGTC CAATTCAAACTATGGAGGATCAAGCCTTGTTACAAGCAGTC < 41bp 1 0.210066284343043 1 0.257663667201996 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57545632 chr15:57545643 nonsynonymous SNV 0.997 0 32 hm5C_associated_SNPs_10863 0 0 1 0 1 TCF12 chr15:57545666 5'GT 57545666 Upstream 24bp
chr15 57554344 57554344 1 + T G rs36060670 57554338 + 57554318 57554358 41 CAGTCTCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCA CAGTCTCAATGGCAATCATTCAGTCCGGTCTAGTACAGTCA < 41bp 1 0.136617007405897 1 0.121703535318375 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554338 chr15:57554344 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_10864 1 0 1 0 2 TCF12 chr15:57554292 3'AG 57554292 Downstream 53bp
chr15 57554344 57554344 1 + T G rs36060670 57554338 + 57554318 57554358 41 CAGTCTCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCA CAGTCTCAATGGCAATCATTCAGTCCGGTCTAGTACAGTCA < 41bp 1 0.136617007405897 1 0.121703535318375 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554338 chr15:57554344 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_10864 1 0 1 0 2 TCF12 chr15:57554406 5'GT 57554406 Upstream 63bp
chr15 57554344 57554344 1 + T G rs36060670 57554343 + 57554323 57554363 41 TCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCACTACT TCAATGGCAATCATTCAGTCCGGTCTAGTACAGTCACTACT < 41bp 1 0.117407966315703 1 0.0515216588973999 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554343 chr15:57554344 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_10865 1 0 1 0 2 TCF12 chr15:57554292 3'AG 57554292 Downstream 53bp
chr15 57554344 57554344 1 + T G rs36060670 57554343 + 57554323 57554363 41 TCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCACTACT TCAATGGCAATCATTCAGTCCGGTCTAGTACAGTCACTACT < 41bp 1 0.117407966315703 1 0.0515216588973999 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554343 chr15:57554344 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_10865 1 0 1 0 2 TCF12 chr15:57554406 5'GT 57554406 Upstream 63bp
chr15 57554344 57554344 1 + T G rs36060670 57554353 + 57554333 57554373 41 TCATTCAGTCCTGTCTAGTACAGTCACTACTTCAAGCACAG TCATTCAGTCCGGTCTAGTACAGTCACTACTTCAAGCACAG < 41bp 1 0.192633944132576 1 0.0906772315502167 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554353 chr15:57554344 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_10866 1 0 1 0 2 TCF12 chr15:57554292 3'AG 57554292 Downstream 53bp
chr15 57554344 57554344 1 + T G rs36060670 57554353 + 57554333 57554373 41 TCATTCAGTCCTGTCTAGTACAGTCACTACTTCAAGCACAG TCATTCAGTCCGGTCTAGTACAGTCACTACTTCAAGCACAG < 41bp 1 0.192633944132576 1 0.0906772315502167 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554353 chr15:57554344 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_10866 1 0 1 0 2 TCF12 chr15:57554406 5'GT 57554406 Upstream 63bp
chr15 57554344 57554344 1 + T G rs36060670 57554357 + 57554337 57554377 41 TCAGTCCTGTCTAGTACAGTCACTACTTCAAGCACAGACCT TCAGTCCGGTCTAGTACAGTCACTACTTCAAGCACAGACCT < 41bp 1 0.497205648844434 1 0.133619964122772 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554357 chr15:57554344 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_10867 1 0 1 0 2 TCF12 chr15:57554292 3'AG 57554292 Downstream 53bp
chr15 57554344 57554344 1 + T G rs36060670 57554357 + 57554337 57554377 41 TCAGTCCTGTCTAGTACAGTCACTACTTCAAGCACAGACCT TCAGTCCGGTCTAGTACAGTCACTACTTCAAGCACAGACCT < 41bp 1 0.497205648844434 1 0.133619964122772 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554357 chr15:57554344 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_10867 1 0 1 0 2 TCF12 chr15:57554406 5'GT 57554406 Upstream 63bp
chr15 57554344 57554344 1 + T G rs36060670 57554359 + 57554339 57554379 41 AGTCCTGTCTAGTACAGTCACTACTTCAAGCACAGACCTGA AGTCCGGTCTAGTACAGTCACTACTTCAAGCACAGACCTGA < 41bp 1 0.356112003809777 1 0.0685617923736572 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554359 chr15:57554344 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_10868 1 0 1 0 2 TCF12 chr15:57554292 3'AG 57554292 Downstream 53bp
chr15 57554344 57554344 1 + T G rs36060670 57554359 + 57554339 57554379 41 AGTCCTGTCTAGTACAGTCACTACTTCAAGCACAGACCTGA AGTCCGGTCTAGTACAGTCACTACTTCAAGCACAGACCTGA < 41bp 1 0.356112003809777 1 0.0685617923736572 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554359 chr15:57554344 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_10868 1 0 1 0 2 TCF12 chr15:57554406 5'GT 57554406 Upstream 63bp
chr15 59348009 59348009 1 + C T rs184483062 59348026 + 59348006 59348046 41 ATGCAGCAGAAGTTGTGGACCTTACCGTTGATGAAGATGGT ATGTAGCAGAAGTTGTGGACCTTACCGTTGATGAAGATGGT < 41bp 1 0.0349640701992227 1 0.106530636548996 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF111 ENSG00000157450 CDS Human protein_coding chr15:59348026 chr15:59348009 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_10875 0 0 1 0 1 RNF111 chr15:59348044 5'GT 59348044 Upstream 36bp
chr15 63009823 63009823 1 + T A rs141002416 63009833 + 63009813 63009853 41 CATCGCCGCCTCCCAGAATGCAGCTGTTTCCAACAAGAACC CATCGCCGCCACCCAGAATGCAGCTGTTTCCAACAAGAACC < 41bp 1 0.298660199362692 1 0.112868219614029 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63009833 chr15:63009823 nonsynonymous SNV 0.985 2 11 hm5C_associated_SNPs_10876 0 0 0 0 2 TLN2 chr15:63009775 3'AG 63009775 Downstream 49bp
chr15 63009823 63009823 1 + T A rs141002416 63009833 + 63009813 63009853 41 CATCGCCGCCTCCCAGAATGCAGCTGTTTCCAACAAGAACC CATCGCCGCCACCCAGAATGCAGCTGTTTCCAACAAGAACC < 41bp 1 0.298660199362692 1 0.112868219614029 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63009833 chr15:63009823 nonsynonymous SNV 0.985 2 11 hm5C_associated_SNPs_10876 0 0 0 0 2 TLN2 chr15:63009888 5'GT 63009888 Upstream 66bp
chr15 63009823 63009823 1 + T A rs141002416 63009836 + 63009816 63009856 41 CGCCGCCTCCCAGAATGCAGCTGTTTCCAACAAGAACCCTG CGCCGCCACCCAGAATGCAGCTGTTTCCAACAAGAACCCTG < 41bp 1 0.0806165252791961 1 0.0349491238594055 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63009836 chr15:63009823 nonsynonymous SNV 0.985 2 8 hm5C_associated_SNPs_10877 0 0 0 0 2 TLN2 chr15:63009775 3'AG 63009775 Downstream 49bp
chr15 63009823 63009823 1 + T A rs141002416 63009836 + 63009816 63009856 41 CGCCGCCTCCCAGAATGCAGCTGTTTCCAACAAGAACCCTG CGCCGCCACCCAGAATGCAGCTGTTTCCAACAAGAACCCTG < 41bp 1 0.0806165252791961 1 0.0349491238594055 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63009836 chr15:63009823 nonsynonymous SNV 0.985 2 8 hm5C_associated_SNPs_10877 0 0 0 0 2 TLN2 chr15:63009888 5'GT 63009888 Upstream 66bp
chr15 63111781 63111781 1 + G A rs143218219 63111780 + 63111760 63111800 41 TTCTCCAAGCGAGTCGCCGGCGCTGTGACAGAGCTCATCCA TTCTCCAAGCGAGTCGCCGGCACTGTGACAGAGCTCATCCA < 41bp 1 0.126242001360134 1 0.089093953371048 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63111780 chr15:63111781 nonsynonymous SNV 0.141 1 22 hm5C_associated_SNPs_10878 0 0 0 0 2 TLN2 chr15:63111715 3'AG 63111715 Downstream 67bp
chr15 63111781 63111781 1 + G A rs143218219 63111780 + 63111760 63111800 41 TTCTCCAAGCGAGTCGCCGGCGCTGTGACAGAGCTCATCCA TTCTCCAAGCGAGTCGCCGGCACTGTGACAGAGCTCATCCA < 41bp 1 0.126242001360134 1 0.089093953371048 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63111780 chr15:63111781 nonsynonymous SNV 0.141 1 22 hm5C_associated_SNPs_10878 0 0 0 0 2 TLN2 chr15:63111820 5'GT 63111820 Upstream 40bp
chr15 63111786 63111786 1 + G T rs146565364 63111780 + 63111760 63111800 41 TTCTCCAAGCGAGTCGCCGGCGCTGTGACAGAGCTCATCCA TTCTCCAAGCGAGTCGCCGGCGCTGTTACAGAGCTCATCCA < 41bp 1 0.16380973524919 1 0.264760226011276 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63111780 chr15:63111786 synonymous SNV . 0 27 hm5C_associated_SNPs_10879 0 0 0 0 2 TLN2 chr15:63111715 3'AG 63111715 Downstream 72bp
chr15 63111786 63111786 1 + G T rs146565364 63111780 + 63111760 63111800 41 TTCTCCAAGCGAGTCGCCGGCGCTGTGACAGAGCTCATCCA TTCTCCAAGCGAGTCGCCGGCGCTGTTACAGAGCTCATCCA < 41bp 1 0.16380973524919 1 0.264760226011276 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63111780 chr15:63111786 synonymous SNV . 0 27 hm5C_associated_SNPs_10879 0 0 0 0 2 TLN2 chr15:63111820 5'GT 63111820 Upstream 35bp
chr15 63358174 63358174 1 + A G rs140658011 63358189 + 63358169 63358209 41 TGTCTATTCTCCAGCTGACCCTGGTTCTCTCTCTTAGCATC TGTCTGTTCTCCAGCTGACCCTGGTTCTCTCTCTTAGCATC < 41bp 1 0.543295454892044 1 0.0909456610679626 experiment 0.913409090215911 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TPM1 ENSG00000140416 CDS Human protein_coding chr15:63358189 chr15:63358174 synonymous SNV . 0 6 hm5C_associated_SNPs_10880 2 0 1 0 1 TPM1 chr15:63358095 3'AG 63358095 Downstream 80bp
chr15 64388275 64388275 1 + G A rs115947230 64388268 + 64388248 64388288 41 GAGACTGCCTCCGCCCTTCCCCGGCCTGGAGCCGGAGTCCG GAGACTGCCTCCGCCCTTCCCCGGCCTAGAGCCGGAGTCCG < 41bp 1 0.540640634935031 1 0.776137411594391 experiment 0.918718730129938 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64388268 chr15:64388275 synonymous SNV . 0 28 hm5C_associated_SNPs_10897 0 0 1 0 1 SNX1 chr15:64388371 5'GT 64388371 Upstream 97bp
chr15 64410352 64410352 1 + A T rs186954122 64410334 + 64410314 64410354 41 AGATGCCACAGTGGAGCTATCCTTGGACAGCACACAAAATA AGATGCCACAGTGGAGCTATCCTTGGACAGCACACAAATTA < 41bp 1 0.0550305156308263 1 0.121585607528687 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410334 chr15:64410352 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_10898 0 0 1 0 2 SNX1 chr15:64410316 3'AG 64410316 Downstream 37bp
chr15 64410352 64410352 1 + A T rs186954122 64410334 + 64410314 64410354 41 AGATGCCACAGTGGAGCTATCCTTGGACAGCACACAAAATA AGATGCCACAGTGGAGCTATCCTTGGACAGCACACAAATTA < 41bp 1 0.0550305156308263 1 0.121585607528687 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410334 chr15:64410352 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_10898 0 0 1 0 2 SNX1 chr15:64410443 5'GT 64410443 Upstream 92bp
chr15 64418397 64418397 1 + G A rs1130603 64418395 + 64418375 64418415 41 AGAATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTC AGAATGGCTTCATTGTCCCTCCACCCCCGGAGAAGAGCCTC < 41bp 1 0.0608011998826184 1 0.258761823177338 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418395 chr15:64418397 synonymous SNV . 0 23 hm5C_associated_SNPs_10899 0 0 1 0 1 SNX1 chr15:64418419 5'GT 64418419 Upstream 23bp
chr15 64418397 64418397 1 + G A rs1130603 64418396 + 64418376 64418416 41 GAATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTCA GAATGGCTTCATTGTCCCTCCACCCCCGGAGAAGAGCCTCA < 41bp 1 0.159650781781987 1 0.158438324928284 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418396 chr15:64418397 synonymous SNV . 0 22 hm5C_associated_SNPs_10900 0 0 1 0 1 SNX1 chr15:64418419 5'GT 64418419 Upstream 23bp
chr15 64418397 64418397 1 + G A rs1130603 64418398 + 64418378 64418418 41 ATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTCATA ATGGCTTCATTGTCCCTCCACCCCCGGAGAAGAGCCTCATA < 41bp 1 0.144864498668944 1 0.0439735949039459 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418398 chr15:64418397 synonymous SNV . 0 20 hm5C_associated_SNPs_10901 0 0 1 0 1 SNX1 chr15:64418419 5'GT 64418419 Upstream 23bp
chr15 64448293 64448293 1 - G A rs530126062 64448276 - 64448256 64448296 41 CCCCTGAAGGATGTGATCATCGCAGACTGCGGCAAGATCGA CCCTTGAAGGATGTGATCATCGCAGACTGCGGCAAGATCGA < 41bp 1 0.719878869833358 1 0.439964234828949 experiment 0.560242260333283 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PPIB ENSG00000166794 CDS Human protein_coding chr15:64448276 chr15:64448293 synonymous SNV . 0 4 hm5C_associated_SNPs_10903 0 0 1 0 1 PPIB chr15:64448344 3'AG 64448344 Downstream 52bp
chr15 64448293 64448293 1 - G A rs530126062 64448279 - 64448259 64448299 41 AAACCCCTGAAGGATGTGATCATCGCAGACTGCGGCAAGAT AAACCCTTGAAGGATGTGATCATCGCAGACTGCGGCAAGAT < 41bp 1 0.378709548511762 1 0.0371904373168945 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PPIB ENSG00000166794 CDS Human protein_coding chr15:64448279 chr15:64448293 synonymous SNV . 0 7 hm5C_associated_SNPs_10904 0 0 1 0 1 PPIB chr15:64448344 3'AG 64448344 Downstream 52bp
chr15 66797686 66797686 1 - C A rs147940200 66797669 - 66797649 66797689 41 GCCGCTCCCACATCCCGCCCCAATGTGAGAGCGGTACCGGA GCCTCTCCCACATCCCGCCCCAATGTGAGAGCGGTACCGGA < 41bp 1 0.410426706053047 1 0.187331229448318 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZWILCH ENSG00000174442 CDS Human other chr15:66797669 chr15:66797686 synonymous SNV . 0 4 hm5C_associated_SNPs_10911 0 0 0 0 1 ZWILCH chr15:66797666 5'GT 66797666 Upstream 21bp
chr15 66797686 66797686 1 - C A rs147940200 66797670 - 66797650 66797690 41 AGCCGCTCCCACATCCCGCCCCAATGTGAGAGCGGTACCGG AGCCTCTCCCACATCCCGCCCCAATGTGAGAGCGGTACCGG < 41bp 1 0.223707239644744 1 0.224145740270615 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZWILCH ENSG00000174442 CDS Human other chr15:66797670 chr15:66797686 synonymous SNV . 0 5 hm5C_associated_SNPs_10912 0 0 0 0 1 ZWILCH chr15:66797666 5'GT 66797666 Upstream 21bp
chr15 66797686 66797686 1 - C A rs147940200 66797671 - 66797651 66797691 41 CAGCCGCTCCCACATCCCGCCCCAATGTGAGAGCGGTACCG CAGCCTCTCCCACATCCCGCCCCAATGTGAGAGCGGTACCG < 41bp 1 0.32862833714323 1 0.362760007381439 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZWILCH ENSG00000174442 CDS Human other chr15:66797671 chr15:66797686 synonymous SNV . 0 6 hm5C_associated_SNPs_10913 0 0 0 0 1 ZWILCH chr15:66797666 5'GT 66797666 Upstream 21bp
chr15 69006909 69006909 1 + C T rs17852399 69006906 + 69006886 69006926 41 CTTCTCCCTCAGGAGGACCTCTCCATGCCCCTGATCGAAGA CTTCTCCCTCAGGAGGACCTCTCTATGCCCCTGATCGAAGA < 41bp 1 0.617409996624394 1 0.874098002910614 experiment 0.765180006751212 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CORO2B ENSG00000103647 CDS Human protein_coding chr15:69006906 chr15:69006909 synonymous SNV . 0 24 hm5C_associated_SNPs_10936 0 0 0 0 2 CORO2B chr15:69006898 3'AG 69006898 Downstream 12bp
chr15 69006909 69006909 1 + C T rs17852399 69006906 + 69006886 69006926 41 CTTCTCCCTCAGGAGGACCTCTCCATGCCCCTGATCGAAGA CTTCTCCCTCAGGAGGACCTCTCTATGCCCCTGATCGAAGA < 41bp 1 0.617409996624394 1 0.874098002910614 experiment 0.765180006751212 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CORO2B ENSG00000103647 CDS Human protein_coding chr15:69006906 chr15:69006909 synonymous SNV . 0 24 hm5C_associated_SNPs_10936 0 0 0 0 2 CORO2B chr15:69007002 5'GT 69007002 Upstream 94bp
chr15 69652439 69652439 1 + C G rs115675417 69652440 + 69652420 69652460 41 ATGCTGAGCCTGAAGCTCCCCAGGCTGTTTAGCATAGACCA ATGCTGAGCCTGAAGCTCCGCAGGCTGTTTAGCATAGACCA < 41bp 1 0.645819256226424 1 0.833355188369751 experiment 0.708361487547153 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69652440 chr15:69652439 nonsynonymous SNV 0.563 4 20 hm5C_associated_SNPs_10937 0 0 0 0 1 PAQR5 chr15:69652470 5'GT 69652470 Upstream 32bp
chr15 69652451 69652451 1 + G A rs73440972 69652440 + 69652420 69652460 41 ATGCTGAGCCTGAAGCTCCCCAGGCTGTTTAGCATAGACCA ATGCTGAGCCTGAAGCTCCCCAGGCTGTTTAACATAGACCA < 41bp 1 0.645655406977738 1 0.835965514183044 experiment 0.708689186044524 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69652440 chr15:69652451 nonsynonymous SNV 0.109 0 32 hm5C_associated_SNPs_10938 0 0 0 0 1 PAQR5 chr15:69652470 5'GT 69652470 Upstream 20bp
chr15 69728949 69728949 1 + A G rs3825858 69728947 + 69728927 69728967 41 TGCAGAGTTTTCCACCTTTGCCATCATGCGAAATTTTGGAT TGCAGAGTTTTCCACCTTTGCCGTCATGCGAAATTTTGGAT < 41bp 1 0.100620111478951 1 0.119483143091202 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69728947 chr15:69728949 synonymous SNV . 0 23 hm5C_associated_SNPs_10939 0 0 1 0 1 KIF23 chr15:69728903 3'AG 69728903 Downstream 47bp
chr15 69728949 69728949 1 + A G rs3825858 69728948 + 69728928 69728968 41 GCAGAGTTTTCCACCTTTGCCATCATGCGAAATTTTGGATA GCAGAGTTTTCCACCTTTGCCGTCATGCGAAATTTTGGATA < 41bp 1 0.641020770892182 1 0.135250508785248 experiment 0.717958458215637 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69728948 chr15:69728949 synonymous SNV . 0 22 hm5C_associated_SNPs_10940 0 0 1 0 1 KIF23 chr15:69728903 3'AG 69728903 Downstream 47bp
chr15 69729049 69729049 1 + T C rs17310879 69729054 + 69729034 69729074 41 ATGATGATTGATGAGTTTAACAAACAATGTAAGGGCAAAAC ATGATGATTGATGAGCTTAACAAACAATGTAAGGGCAAAAC < 41bp 1 0.184525737324184 1 0.402299344539642 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69729054 chr15:69729049 nonsynonymous SNV 0.339 0 16 hm5C_associated_SNPs_10941 0 0 1 0 1 KIF23 chr15:69729061 5'GT 69729061 Upstream 13bp
chr15 69737221 69737221 1 + C T rs200472874 69737220 + 69737200 69737240 41 CAGATGGGTAGATCATAAGCCCGCCTCTAACATGCAAACTG CAGATGGGTAGATCATAAGCCTGCCTCTAACATGCAAACTG < 41bp 1 0.416103042540685 1 0.0383240580558777 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69737220 chr15:69737221 synonymous SNV . 0 22 hm5C_associated_SNPs_10942 0 0 1 0 1 KIF23 chr15:69737129 3'AG 69737129 Downstream 93bp
chr15 69737221 69737221 1 + C T rs200472874 69737224 + 69737204 69737244 41 TGGGTAGATCATAAGCCCGCCTCTAACATGCAAACTGAAAC TGGGTAGATCATAAGCCTGCCTCTAACATGCAAACTGAAAC < 41bp 1 0.342427137895674 1 0.155661940574646 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69737224 chr15:69737221 synonymous SNV . 0 18 hm5C_associated_SNPs_10943 0 0 1 0 1 KIF23 chr15:69737129 3'AG 69737129 Downstream 93bp
chr15 73996338 73996338 1 + G A rs146707793 73996337 + 73996317 73996357 41 GCCGTCAGCCTGCAGGTGGCCGGTGAGCACCAGGAGGGCGA GCCGTCAGCCTGCAGGTGGCCAGTGAGCACCAGGAGGGCGA < 41bp 1 0.423011652217792 1 0.198923796415329 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD276 ENSG00000103855 CDS Human protein_coding chr15:73996337 chr15:73996338 nonsynonymous SNV 0.119 4 22 hm5C_associated_SNPs_10944 0 0 0 0 1 CD276 chr15:73996338 5'GT 73996338 Upstream 1bp
chr15 74501739 74501739 1 + C T rs184924574 74501740 + 74501720 74501760 41 CACTCCCAGGGGGCCACTGCCTGATGAATTGCCAGAGGGGA CACTCCCAGGGGGCCACTGTCTGATGAATTGCCAGAGGGGA < 41bp 1 0.452213848861797 1 0.338088423013687 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STRA6 ENSG00000137868 CDS Human protein_coding chr15:74501740 chr15:74501739 synonymous SNV . 0 20 hm5C_associated_SNPs_10947 0 0 0 0 1 STRA6 chr15:74501729 3'AG 74501729 Downstream 11bp
chr15 75113011 75113011 1 + C T rs140910102 75113003 + 75112983 75113023 41 CTCAGCCCTTCCTGGAGATGCAGCAGCTCCGCCTGGCGAGG CTCAGCCCTTCCTGGAGATGCAGCAGCTTCGCCTGGCGAGG < 41bp 1 0.752096712878773 1 0.500123977661133 experiment 0.495806574242454 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control LMAN1L ENSG00000140506 CDS Human protein_coding chr15:75113003 chr15:75113011 synonymous SNV . 0 29 hm5C_associated_SNPs_10950 0 0 0 0 2 LMAN1L chr15:75112976 3'AG 75112976 Downstream 36bp
chr15 75113011 75113011 1 + C T rs140910102 75113003 + 75112983 75113023 41 CTCAGCCCTTCCTGGAGATGCAGCAGCTCCGCCTGGCGAGG CTCAGCCCTTCCTGGAGATGCAGCAGCTTCGCCTGGCGAGG < 41bp 1 0.752096712878773 1 0.500123977661133 experiment 0.495806574242454 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control LMAN1L ENSG00000140506 CDS Human protein_coding chr15:75113003 chr15:75113011 synonymous SNV . 0 29 hm5C_associated_SNPs_10950 0 0 0 0 2 LMAN1L chr15:75113108 5'GT 75113108 Upstream 98bp
chr15 75113023 75113023 1 + G A rs145422132 75113003 + 75112983 75113023 41 CTCAGCCCTTCCTGGAGATGCAGCAGCTCCGCCTGGCGAGG CTCAGCCCTTCCTGGAGATGCAGCAGCTCCGCCTGGCGAGA < 41bp 1 0.755479897091989 1 0.70647120475769 experiment 0.489040205816021 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control LMAN1L ENSG00000140506 CDS Human protein_coding chr15:75113003 chr15:75113023 synonymous SNV . 0 41 hm5C_associated_SNPs_10951 0 0 0 0 2 LMAN1L chr15:75112976 3'AG 75112976 Downstream 48bp
chr15 75113023 75113023 1 + G A rs145422132 75113003 + 75112983 75113023 41 CTCAGCCCTTCCTGGAGATGCAGCAGCTCCGCCTGGCGAGG CTCAGCCCTTCCTGGAGATGCAGCAGCTCCGCCTGGCGAGA < 41bp 1 0.755479897091989 1 0.70647120475769 experiment 0.489040205816021 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control LMAN1L ENSG00000140506 CDS Human protein_coding chr15:75113003 chr15:75113023 synonymous SNV . 0 41 hm5C_associated_SNPs_10951 0 0 0 0 2 LMAN1L chr15:75113108 5'GT 75113108 Upstream 86bp
chr15 78458638 78458638 1 + C T rs2304826 78458628 + 78458608 78458648 41 TGAGGCTGCGTGTTTTGCTACAATTAAGGACGGAAAGGTAA TGAGGCTGCGTGTTTTGCTACAATTAAGGATGGAAAGGTAA < 41bp 1 0.157906347018383 1 0.0463123321533203 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IDH3A ENSG00000166411 CDS Human protein_coding chr15:78458628 chr15:78458638 synonymous SNV . 0 31 hm5C_associated_SNPs_10961 0 0 1 0 1 IDH3A chr15:78458644 5'GT 78458644 Upstream 7bp
chr15 79185898 79185898 1 + C A rs1435163 79185883 + 79185863 79185903 41 ATATTTTTGTCTTCATAGCTCTTTTATCTTCCTGCCAAGAA ATATTTTTGTCTTCATAGCTCTTTTATCTTCCTGCAAAGAA < 41bp 1 0.037060214704337 1 0.0490189790725708 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79185883 chr15:79185898 synonymous SNV . 0 36 hm5C_associated_SNPs_10977 0 0 1 0 2 MORF4L1 chr15:79185881 3'AG 79185881 Downstream 18bp
chr15 79185898 79185898 1 + C A rs1435163 79185883 + 79185863 79185903 41 ATATTTTTGTCTTCATAGCTCTTTTATCTTCCTGCCAAGAA ATATTTTTGTCTTCATAGCTCTTTTATCTTCCTGCAAAGAA < 41bp 1 0.037060214704337 1 0.0490189790725708 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79185883 chr15:79185898 synonymous SNV . 0 36 hm5C_associated_SNPs_10977 0 0 1 0 2 MORF4L1 chr15:79185969 5'GT 79185969 Upstream 72bp
chr15 80450501 80450501 1 + G T rs151264725 80450510 + 80450490 80450530 41 AACACCAGGATGTCTTCAATCAGGTAGGACATTGTGAAACG AACACCAGGATTTCTTCAATCAGGTAGGACATTGTGAAACG < 41bp 1 0.633385299761259 1 0.822506070137024 experiment 0.733229400477482 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAH ENSG00000103876 CDS Human protein_coding chr15:80450510 chr15:80450501 nonsynonymous SNV 0.989 5 12 hm5C_associated_SNPs_11012 0 0 1 0 2 FAH chr15:80450402 3'AG 80450402 Downstream 100bp
chr15 80450501 80450501 1 + G T rs151264725 80450510 + 80450490 80450530 41 AACACCAGGATGTCTTCAATCAGGTAGGACATTGTGAAACG AACACCAGGATTTCTTCAATCAGGTAGGACATTGTGAAACG < 41bp 1 0.633385299761259 1 0.822506070137024 experiment 0.733229400477482 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAH ENSG00000103876 CDS Human protein_coding chr15:80450510 chr15:80450501 nonsynonymous SNV 0.989 5 12 hm5C_associated_SNPs_11012 0 0 1 0 2 FAH chr15:80450512 5'GT 80450512 Upstream 12bp
chr15 81173442 81173442 1 + C T rs146635298 81173448 + 81173428 81173468 41 ATTGTTCATGTCATCGACCCCAAATCAGGCACAGTCATCCA ATTGTTCATGTCATTGACCCCAAATCAGGCACAGTCATCCA < 41bp 1 0.13158151660615 1 0.15278747677803 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81173448 chr15:81173442 synonymous SNV . 0 15 hm5C_associated_SNPs_11015 0 0 0 0 1 CEMIP chr15:81173477 5'GT 81173477 Upstream 36bp
chr15 81221492 81221492 1 + C T rs35092028 81221501 + 81221481 81221521 41 TTGGACCATAGCGGAAGGACCCTCCCTATAGGCCAGTAGGT TTGGACCATAGTGGAAGGACCCTCCCTATAGGCCAGTAGGT < 41bp 1 0.0125305692092677 1 0.0263857245445251 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81221501 chr15:81221492 synonymous SNV . 0 12 hm5C_associated_SNPs_11016 0 0 1 0 1 CEMIP chr15:81221515 5'GT 81221515 Upstream 24bp
chr15 81221492 81221492 1 + C T rs35092028 81221505 + 81221485 81221525 41 ACCATAGCGGAAGGACCCTCCCTATAGGCCAGTAGGTTTGC ACCATAGTGGAAGGACCCTCCCTATAGGCCAGTAGGTTTGC < 41bp 1 0.0333854889273597 1 0.382892847061157 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81221505 chr15:81221492 synonymous SNV . 0 8 hm5C_associated_SNPs_11017 0 0 1 0 1 CEMIP chr15:81221515 5'GT 81221515 Upstream 24bp
chr15 81221512 81221512 1 + G A rs113116775 81221501 + 81221481 81221521 41 TTGGACCATAGCGGAAGGACCCTCCCTATAGGCCAGTAGGT TTGGACCATAGCGGAAGGACCCTCCCTATAGACCAGTAGGT < 41bp 1 0.0145500754634428 1 0.0312937200069427 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81221501 chr15:81221512 nonsynonymous SNV 0.996 1 32 hm5C_associated_SNPs_11018 0 0 1 0 1 CEMIP chr15:81221515 5'GT 81221515 Upstream 4bp
chr15 81221512 81221512 1 + G A rs113116775 81221505 + 81221485 81221525 41 ACCATAGCGGAAGGACCCTCCCTATAGGCCAGTAGGTTTGC ACCATAGCGGAAGGACCCTCCCTATAGACCAGTAGGTTTGC < 41bp 1 0.0254611464772965 1 0.565735101699829 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81221505 chr15:81221512 nonsynonymous SNV 0.996 1 28 hm5C_associated_SNPs_11019 0 0 1 0 1 CEMIP chr15:81221515 5'GT 81221515 Upstream 4bp
chr15 84789964 84789964 1 + A C rs374428768 84789972 + 84789952 84789992 41 GGAGTGCCATTGAAACATGTCCAAAAGGAGAGGAGCCAAGA GGAGTGCCATTGCAACATGTCCAAAAGGAGAGGAGCCAAGA < 41bp 1 0.415042538280214 1 0.253550261259079 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EFTUD1P1 ENSG00000259404 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:84789972 chr15:84789964 . . 0 13 hm5C_associated_SNPs_11026 0 0 0 0 1 EFTUD1P1 chr15:84789993 5'GT 84789993 Upstream 30bp
chr15 84789983 84789983 1 + G C rs558947581 84789972 + 84789952 84789992 41 GGAGTGCCATTGAAACATGTCCAAAAGGAGAGGAGCCAAGA GGAGTGCCATTGAAACATGTCCAAAAGGAGACGAGCCAAGA < 41bp 1 0.380139852989042 1 0.234030991792679 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EFTUD1P1 ENSG00000259404 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:84789972 chr15:84789983 . . 0 32 hm5C_associated_SNPs_11027 0 0 0 0 1 EFTUD1P1 chr15:84789993 5'GT 84789993 Upstream 11bp
chr15 85923943 85923943 1 + G C rs571229939 85923949 + 85923929 85923969 41 TTTAGCCGCCTCCGGGGGAGCGGCCGCCTATTGTCTTTCTC TTTAGCCGCCTCCGCGGGAGCGGCCGCCTATTGTCTTTCTC < 41bp 1 0.34627750296263 1 0.362250208854675 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP13 ENSG00000170776 UTR5 Human protein_coding chr15:85923949 chr15:85923943 . . 0 15 hm5C_associated_SNPs_11030 0 0 1 0 1 AKAP13 chr15:85924029 5'GT 85924029 Upstream 87bp
chr15 89015930 89015930 1 + T C rs9920196 89015924 + 89015904 89015944 41 GGAAAGAAATTTGAGGAGATCCCAATTGCACACATTAAAGC GGAAAGAAATTTGAGGAGATCCCAATCGCACACATTAAAGC < 41bp 1 0.470050551151895 1 0.220110327005386 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MRPS11 ENSG00000181991 CDS Human protein_coding chr15:89015924 chr15:89015930 synonymous SNV . 0 27 hm5C_associated_SNPs_11034 0 0 1 0 2 MRPS11 chr15:89015858 3'AG 89015858 Downstream 73bp
chr15 89015930 89015930 1 + T C rs9920196 89015924 + 89015904 89015944 41 GGAAAGAAATTTGAGGAGATCCCAATTGCACACATTAAAGC GGAAAGAAATTTGAGGAGATCCCAATCGCACACATTAAAGC < 41bp 1 0.470050551151895 1 0.220110327005386 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MRPS11 ENSG00000181991 CDS Human protein_coding chr15:89015924 chr15:89015930 synonymous SNV . 0 27 hm5C_associated_SNPs_11034 0 0 1 0 2 MRPS11 chr15:89015956 5'GT 89015956 Upstream 27bp
chr15 89835982 89835982 1 + C A rs28378332 89835978 + 89835958 89835998 41 TATAAGAATACAGTCATACCCTTACAGCAGGGAGAGGAGGA TATAAGAATACAGTCATACCCTTAAAGCAGGGAGAGGAGGA < 41bp 1 0.438281396881712 1 0.190776169300079 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout FANCI ENSG00000140525 CDS Human protein_coding chr15:89835978 chr15:89835982 nonsynonymous SNV 0.347 0 25 hm5C_associated_SNPs_11039 1 0 1 1 1 FANCI chr15:89835919 3'AG 89835919 Downstream 64bp
chr15 90159640 90159640 1 + T C rs187740323 90159641 + 90159621 90159661 41 GTGTTTACATTTTAGGTTATCACAAACTGCTGACTAAGAGT GTGTTTACATTTTAGGTTACCACAAACTGCTGACTAAGAGT < 41bp 1 0.261008797464182 1 0.447344958782196 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TICRR ENSG00000140534 CDS Human protein_coding chr15:90159641 chr15:90159640 synonymous SNV . 0 20 hm5C_associated_SNPs_11041 0 0 1 0 2 TICRR chr15:90159636 3'AG 90159636 Downstream 5bp
chr15 90159640 90159640 1 + T C rs187740323 90159641 + 90159621 90159661 41 GTGTTTACATTTTAGGTTATCACAAACTGCTGACTAAGAGT GTGTTTACATTTTAGGTTACCACAAACTGCTGACTAAGAGT < 41bp 1 0.261008797464182 1 0.447344958782196 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TICRR ENSG00000140534 CDS Human protein_coding chr15:90159641 chr15:90159640 synonymous SNV . 0 20 hm5C_associated_SNPs_11041 0 0 1 0 2 TICRR chr15:90159726 5'GT 90159726 Upstream 87bp
chr15 91035827 91035827 1 + G A rs112274735 91035817 + 91035797 91035837 41 GTACCGACAGAGGAGAAAGGCCGAACTAGTGAAACTGCAAC GTACCGACAGAGGAGAAAGGCCGAACTAGTAAAACTGCAAC < 41bp 1 0.335722795640352 1 0.362477362155914 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IQGAP1 ENSG00000140575 CDS Human protein_coding chr15:91035817 chr15:91035827 synonymous SNV . 0 31 hm5C_associated_SNPs_11049 0 0 1 0 1 IQGAP1 chr15:91035777 3'AG 91035777 Downstream 51bp
chr15 91448684 91448684 1 + C G rs143801767 91448697 + 91448677 91448717 41 CCATCTCCCCGCAGGACTGCCAGTTTGCTTTGGGGGGCCGG CCATCTCGCCGCAGGACTGCCAGTTTGCTTTGGGGGGCCGG < 41bp 1 0.302359985808757 1 0.242849111557007 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91448697 chr15:91448684 synonymous SNV . 0 8 hm5C_associated_SNPs_11061 0 0 1 0 1 MAN2A2 chr15:91448738 5'GT 91448738 Upstream 55bp
chr15 91478493 91478493 1 + G A rs556780967 91478506 + 91478486 91478526 41 GCGTCCCGAACCCAGACTCGCCCCGCCCCAGAGACTGCGCC GCGTCCCAAACCCAGACTCGCCCCGCCCCAGAGACTGCGCC < 41bp 1 0.444695503459655 1 0.0888560712337494 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control UNC45A ENSG00000140553 UTR5 Human protein_coding chr15:91478506 chr15:91478493 . . 0 8 hm5C_associated_SNPs_11062 0 0 0 0 1 UNC45A chr15:91478560 5'GT 91478560 Upstream 68bp
chr15 91478493 91478493 1 + G A rs556780967 91478508 + 91478488 91478528 41 GTCCCGAACCCAGACTCGCCCCGCCCCAGAGACTGCGCCTG GTCCCAAACCCAGACTCGCCCCGCCCCAGAGACTGCGCCTG < 41bp 1 0.409995952796404 1 0.202614456415176 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control UNC45A ENSG00000140553 UTR5 Human protein_coding chr15:91478508 chr15:91478493 . . 0 6 hm5C_associated_SNPs_11063 0 0 0 0 1 UNC45A chr15:91478560 5'GT 91478560 Upstream 68bp
chr15 91478493 91478493 1 + G A rs556780967 91478509 + 91478489 91478529 41 TCCCGAACCCAGACTCGCCCCGCCCCAGAGACTGCGCCTGC TCCCAAACCCAGACTCGCCCCGCCCCAGAGACTGCGCCTGC < 41bp 1 0.491999246192124 1 0.142234712839127 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UNC45A ENSG00000140553 UTR5 Human protein_coding chr15:91478509 chr15:91478493 . . 0 5 hm5C_associated_SNPs_11064 0 0 0 0 1 UNC45A chr15:91478560 5'GT 91478560 Upstream 68bp
chr15 91478493 91478493 1 + G A rs556780967 91478511 + 91478491 91478531 41 CCGAACCCAGACTCGCCCCGCCCCAGAGACTGCGCCTGCGC CCAAACCCAGACTCGCCCCGCCCCAGAGACTGCGCCTGCGC < 41bp 1 0.546997351831263 1 0.145231932401657 experiment 0.906005296337475 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UNC45A ENSG00000140553 UTR5 Human protein_coding chr15:91478511 chr15:91478493 . . 0 3 hm5C_associated_SNPs_11065 0 0 0 0 1 UNC45A chr15:91478560 5'GT 91478560 Upstream 68bp
chr15 91478493 91478493 1 + G A rs556780967 91478512 + 91478492 91478532 41 CGAACCCAGACTCGCCCCGCCCCAGAGACTGCGCCTGCGCG CAAACCCAGACTCGCCCCGCCCCAGAGACTGCGCCTGCGCG < 41bp 1 0.374808760322562 1 0.405648291110992 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UNC45A ENSG00000140553 UTR5 Human protein_coding chr15:91478512 chr15:91478493 . . 0 2 hm5C_associated_SNPs_11066 0 0 0 0 1 UNC45A chr15:91478560 5'GT 91478560 Upstream 68bp
chr15 91478544 91478544 1 + A C rs17635974 91478525 + 91478505 91478545 41 GCCCCGCCCCAGAGACTGCGCCTGCGCGGGCACGAGACAAC GCCCCGCCCCAGAGACTGCGCCTGCGCGGGCACGAGACACC < 41bp 1 0.383238440033824 1 0.130779802799225 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UNC45A ENSG00000140553 UTR5 Human protein_coding chr15:91478525 chr15:91478544 . . 0 40 hm5C_associated_SNPs_11067 0 0 1 0 2 UNC45A chr15:91478560 5'GT 91478560 Upstream 17bp
chr15 91478544 91478544 1 + A C rs17635974 91478525 + 91478505 91478545 41 GCCCCGCCCCAGAGACTGCGCCTGCGCGGGCACGAGACAAC GCCCCGCCCCAGAGACTGCGCCTGCGCGGGCACGAGACACC < 41bp 1 0.383238440033824 1 0.130779802799225 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UNC45A ENSG00000140553 UTR5 Human protein_coding chr15:91478525 chr15:91478544 . . 0 40 hm5C_associated_SNPs_11067 0 0 1 0 2 UNC45A chr15:91478605 5'GT 91478605 Upstream 62bp
chr15 91503684 91503684 1 + C G rs61742976 91503678 + 91503658 91503698 41 ACTGGATCTCCCCATGGGCTCAGATGCAGTCAAGGCCAGCT ACTGGATCTCCCCATGGGCTCAGATGGAGTCAAGGCCAGCT < 41bp 1 0.520422714857089 1 0.470725238323212 experiment 0.959154570285822 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RCCD1 ENSG00000166965 CDS Human protein_coding chr15:91503678 chr15:91503684 nonsynonymous SNV 0.700 2 27 hm5C_associated_SNPs_11068 0 0 1 0 1 RCCD1 chr15:91503728 5'GT 91503728 Upstream 45bp
chr15 93482864 93482864 1 + A G rs117844037 93482846 + 93482826 93482866 41 TGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAAAA TGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAGAA < 41bp 1 0.357797454336083 1 0.496338993310928 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482846 chr15:93482864 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_11069 2 0 1 0 2 CHD2 chr15:93482808 3'AG 93482808 Downstream 57bp
chr15 93482864 93482864 1 + A G rs117844037 93482846 + 93482826 93482866 41 TGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAAAA TGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAGAA < 41bp 1 0.357797454336083 1 0.496338993310928 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482846 chr15:93482864 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_11069 2 0 1 0 2 CHD2 chr15:93482948 5'GT 93482948 Upstream 85bp
chr15 93482864 93482864 1 + A G rs117844037 93482848 + 93482828 93482868 41 TTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAAAAAG TTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAGAAAG < 41bp 1 0.570931754251093 1 0.807113170623779 experiment 0.858136491497813 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482848 chr15:93482864 nonsynonymous SNV 1.000 0 37 hm5C_associated_SNPs_11070 2 0 1 0 2 CHD2 chr15:93482808 3'AG 93482808 Downstream 57bp
chr15 93482864 93482864 1 + A G rs117844037 93482848 + 93482828 93482868 41 TTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAAAAAG TTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAGAAAG < 41bp 1 0.570931754251093 1 0.807113170623779 experiment 0.858136491497813 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482848 chr15:93482864 nonsynonymous SNV 1.000 0 37 hm5C_associated_SNPs_11070 2 0 1 0 2 CHD2 chr15:93482948 5'GT 93482948 Upstream 85bp
chr15 99673019 99673019 1 + C G rs139332546 99673023 + 99673003 99673043 41 GGAGCTCTCGGTGTGTCTGACCGTGGTTCCTGGAGAGACGC GGAGCTCTCGGTGTGTGTGACCGTGGTTCCTGGAGAGACGC < 41bp 1 0.247120948041463 1 0.102363228797913 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99673023 chr15:99673019 nonsynonymous SNV 0.049 2 17 hm5C_associated_SNPs_11086 0 0 1 0 1 SYNM chr15:99672955 3'AG 99672955 Downstream 65bp
chr15 100106220 100106220 1 + G A rs575258085 100106206 + 100106186 100106226 41 GGGATCCGTGCGCGGATGTCCCGGCGAGTCCCGGGCTGAAA GGGATCCGTGCGCGGATGTCCCGGCGAGTCCCGGACTGAAA < 41bp 1 0.590911025742828 1 0.783976674079895 experiment 0.818177948514345 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MEF2A ENSG00000068305 UTR5 Human protein_coding chr15:100106206 chr15:100106220 . . 0 35 hm5C_associated_SNPs_11100 0 0 1 0 1 MEF2A chr15:100106309 5'GT 100106309 Upstream 90bp
chr15 101169694 101169694 1 + A G rs61752833 101169701 + 101169681 101169721 41 CTCTTCACTATGCAGCCATGCATGGCCGGGCCCGCATTGCA CTCTTCACTATGCGGCCATGCATGGCCGGGCCCGCATTGCA < 41bp 1 0.462509259758373 1 0.0504675805568695 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ASB7 ENSG00000183475 CDS Human protein_coding chr15:101169701 chr15:101169694 synonymous SNV . 0 14 hm5C_associated_SNPs_11101 0 0 1 0 1 ASB7 chr15:101169642 3'AG 101169642 Downstream 53bp
chr15 101447436 101447436 1 + C T rs146643806 101447426 + 101447406 101447446 41 ACTCACAGCAGCCGTGTTCACAAAAAATCTCGACAAAGCCC ACTCACAGCAGCCGTGTTCACAAAAAATCTTGACAAAGCCC < 41bp 1 0.718195203771111 1 0.528924822807312 experiment 0.563609592457778 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101447426 chr15:101447436 synonymous SNV . 0 31 hm5C_associated_SNPs_11102 0 0 0 0 1 ALDH1A3 chr15:101447483 5'GT 101447483 Upstream 48bp
chr15 101447441 101447441 1 + A G rs142115253 101447426 + 101447406 101447446 41 ACTCACAGCAGCCGTGTTCACAAAAAATCTCGACAAAGCCC ACTCACAGCAGCCGTGTTCACAAAAAATCTCGACAGAGCCC < 41bp 1 0.775942000366404 1 0.516779184341431 experiment 0.448115999267191 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101447426 chr15:101447441 nonsynonymous SNV 0.999 0 36 hm5C_associated_SNPs_11103 0 0 0 0 1 ALDH1A3 chr15:101447483 5'GT 101447483 Upstream 43bp
chr15 101448628 101448628 1 + C T rs145659258 101448616 + 101448596 101448636 41 CTTCCATTCTTTTCTAGGATCAACTGCTACAACGCCCTCTA CTTCCATTCTTTTCTAGGATCAACTGCTACAATGCCCTCTA < 41bp 1 0.359728052462732 1 0.152811139822006 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101448616 chr15:101448628 synonymous SNV . 0 33 hm5C_associated_SNPs_11104 0 0 0 0 2 ALDH1A3 chr15:101448613 3'AG 101448613 Downstream 16bp
chr15 101448628 101448628 1 + C T rs145659258 101448616 + 101448596 101448636 41 CTTCCATTCTTTTCTAGGATCAACTGCTACAACGCCCTCTA CTTCCATTCTTTTCTAGGATCAACTGCTACAATGCCCTCTA < 41bp 1 0.359728052462732 1 0.152811139822006 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101448616 chr15:101448628 synonymous SNV . 0 33 hm5C_associated_SNPs_11104 0 0 0 0 2 ALDH1A3 chr15:101448687 5'GT 101448687 Upstream 60bp
chr16 107162 107162 1 + C G rs10266 107163 + 107143 107183 41 AGCCTCCAGACAGGACAACCCTCTTCATCACTGGTGGCTGA AGCCTCCAGACAGGACAACGCTCTTCATCACTGGTGGCTGA < 41bp 1 0.395314595047226 1 0.0434209406375885 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNRNP25 ENSG00000161981 UTR3 Human protein_coding chr16:107163 chr16:107162 . . 0 20 hm5C_associated_SNPs_11107 0 0 1 2 1 SNRNP25 chr16:107086 3'AG 107086 Downstream 77bp
chr16 133280 133280 1 + G A rs2266608 133261 + 133241 133281 41 ACATCTCCAGCCAGGGTGAGCAGTGCTGGGGCACGGGGGGT ACATCTCCAGCCAGGGTGAGCAGTGCTGGGGCACGGGGGAT < 41bp 1 0.28506617193806 1 0.350021839141846 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MPG ENSG00000103152 intronic Human protein_coding chr16:133261 chr16:133280 . . 0 40 hm5C_associated_SNPs_11108 0 0 1 0 1 MPG chr16:133255 3'AG 133255 Downstream 26bp
chr16 309998 309998 1 + C T rs78001048 309995 + 309975 310015 41 CTCTCCCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG CTCTCCCTGCACCTTTGCAGCTGTTGTGTCGGGGGCCAACG < 41bp 1 0.351628464761484 1 0.0204946100711823 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:309995 chr16:309998 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_11109 0 0 1 0 1 FAM234A chr16:309968 3'AG 309968 Downstream 31bp
chr16 310005 310005 1 + G A rs13335497 309995 + 309975 310015 41 CTCTCCCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG CTCTCCCTGCACCTTTGCAGCTGCTGTGTCAGGGGCCAACG < 41bp 1 0.602454296230401 1 0.0297152101993561 experiment 0.795091407539199 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:309995 chr16:310005 synonymous SNV . 0 31 hm5C_associated_SNPs_11110 0 0 1 0 1 FAM234A chr16:309968 3'AG 309968 Downstream 38bp
chr16 449399 449399 1 + C T rs148144911 449415 + 449395 449435 41 TTGCCGAGCACTACCAGGACCTGCGGAGGAAGCCCTTCTAC TTGCTGAGCACTACCAGGACCTGCGGAGGAAGCCCTTCTAC < 41bp 1 0.731786731156185 1 0.350460320711136 experiment 0.536426537687629 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NME4 ENSG00000103202 CDS Human protein_coding chr16:449415 chr16:449399 synonymous SNV . 0 5 hm5C_associated_SNPs_11111 0 0 1 0 1 NME4 chr16:449379 3'AG 449379 Downstream 21bp
chr16 457007 457007 1 + T C rs141804536 457019 + 456999 457039 41 TATTGGGTTCTGGGAGGGACCTTCCTGTTTGGGGGTAATGT TATTGGGTCCTGGGAGGGACCTTCCTGTTTGGGGGTAATGT < 41bp 1 0.020426249497427 1 0.0797382295131683 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DECR2 ENSG00000103202;ENSG00000242612 intronic Human protein_coding chr16:457019 chr16:457007 . . 0 9 hm5C_associated_SNPs_11112 0 0 1 0 1 DECR2 chr16:456952 3'AG 456952 Downstream 56bp
chr16 457027 457027 1 + T C rs113274541 457019 + 456999 457039 41 TATTGGGTTCTGGGAGGGACCTTCCTGTTTGGGGGTAATGT TATTGGGTTCTGGGAGGGACCTTCCTGTCTGGGGGTAATGT < 41bp 1 0.0214210769404734 1 0.0376558899879456 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DECR2 ENSG00000103202;ENSG00000242612 intronic Human protein_coding chr16:457019 chr16:457027 . . 0 29 hm5C_associated_SNPs_11113 0 0 1 0 1 DECR2 chr16:456952 3'AG 456952 Downstream 76bp
chr16 460299 460299 1 + A T rs542989271 460313 + 460293 460333 41 TTCAAGACCGTGATGGACATCGATACCAGCGGCACCTTCAA TTCAAGTCCGTGATGGACATCGATACCAGCGGCACCTTCAA < 41bp 1 0.471528651241555 1 0.434303343296051 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DECR2 ENSG00000242612 CDS Human protein_coding chr16:460313 chr16:460299 nonsynonymous SNV 0.991 2 7 hm5C_associated_SNPs_11114 0 0 1 0 2 DECR2 chr16:460243 3'AG 460243 Downstream 57bp
chr16 460299 460299 1 + A T rs542989271 460313 + 460293 460333 41 TTCAAGACCGTGATGGACATCGATACCAGCGGCACCTTCAA TTCAAGTCCGTGATGGACATCGATACCAGCGGCACCTTCAA < 41bp 1 0.471528651241555 1 0.434303343296051 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DECR2 ENSG00000242612 CDS Human protein_coding chr16:460313 chr16:460299 nonsynonymous SNV 0.991 2 7 hm5C_associated_SNPs_11114 0 0 1 0 2 DECR2 chr16:460367 5'GT 460367 Upstream 69bp
chr16 460321 460321 1 + G A rs77446963 460313 + 460293 460333 41 TTCAAGACCGTGATGGACATCGATACCAGCGGCACCTTCAA TTCAAGACCGTGATGGACATCGATACCAACGGCACCTTCAA < 41bp 1 0.524449327845475 1 0.468924969434738 experiment 0.951101344309051 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DECR2 ENSG00000242612 CDS Human protein_coding chr16:460313 chr16:460321 nonsynonymous SNV 0.002 0 29 hm5C_associated_SNPs_11115 0 0 1 2 2 DECR2 chr16:460243 3'AG 460243 Downstream 79bp
chr16 460321 460321 1 + G A rs77446963 460313 + 460293 460333 41 TTCAAGACCGTGATGGACATCGATACCAGCGGCACCTTCAA TTCAAGACCGTGATGGACATCGATACCAACGGCACCTTCAA < 41bp 1 0.524449327845475 1 0.468924969434738 experiment 0.951101344309051 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DECR2 ENSG00000242612 CDS Human protein_coding chr16:460313 chr16:460321 nonsynonymous SNV 0.002 0 29 hm5C_associated_SNPs_11115 0 0 1 2 2 DECR2 chr16:460367 5'GT 460367 Upstream 47bp
chr16 560734 560734 1 + G A rs141366917 560728 + 560708 560748 41 CGAGATGGTCCTGGAAGAGACCCGGCGTCAGAAGGAGCTCC CGAGATGGTCCTGGAAGAGACCCGGCATCAGAAGGAGCTCC < 41bp 1 0.350299027953151 1 0.0981593132019043 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:560728 chr16:560734 nonsynonymous SNV 0.022 2 27 hm5C_associated_SNPs_11118 0 0 1 0 2 RAB11FIP3 chr16:560660 3'AG 560660 Downstream 75bp
chr16 560734 560734 1 + G A rs141366917 560728 + 560708 560748 41 CGAGATGGTCCTGGAAGAGACCCGGCGTCAGAAGGAGCTCC CGAGATGGTCCTGGAAGAGACCCGGCATCAGAAGGAGCTCC < 41bp 1 0.350299027953151 1 0.0981593132019043 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:560728 chr16:560734 nonsynonymous SNV 0.022 2 27 hm5C_associated_SNPs_11118 0 0 1 0 2 RAB11FIP3 chr16:560800 5'GT 560800 Upstream 67bp
chr16 560734 560734 1 + G A rs141366917 560733 + 560713 560753 41 TGGTCCTGGAAGAGACCCGGCGTCAGAAGGAGCTCCTGTGC TGGTCCTGGAAGAGACCCGGCATCAGAAGGAGCTCCTGTGC < 41bp 1 0.282650027238687 1 0.046173483133316 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:560733 chr16:560734 nonsynonymous SNV 0.022 2 22 hm5C_associated_SNPs_11119 0 0 1 0 2 RAB11FIP3 chr16:560660 3'AG 560660 Downstream 75bp
chr16 560734 560734 1 + G A rs141366917 560733 + 560713 560753 41 TGGTCCTGGAAGAGACCCGGCGTCAGAAGGAGCTCCTGTGC TGGTCCTGGAAGAGACCCGGCATCAGAAGGAGCTCCTGTGC < 41bp 1 0.282650027238687 1 0.046173483133316 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:560733 chr16:560734 nonsynonymous SNV 0.022 2 22 hm5C_associated_SNPs_11119 0 0 1 0 2 RAB11FIP3 chr16:560800 5'GT 560800 Upstream 67bp
chr16 560734 560734 1 + G A rs141366917 560748 + 560728 560768 41 CCCGGCGTCAGAAGGAGCTCCTGTGCAAGATGGAGAGGGAG CCCGGCATCAGAAGGAGCTCCTGTGCAAGATGGAGAGGGAG < 41bp 1 0.150794746586752 1 0.556317746639252 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:560748 chr16:560734 nonsynonymous SNV 0.022 2 7 hm5C_associated_SNPs_11120 0 0 1 0 2 RAB11FIP3 chr16:560660 3'AG 560660 Downstream 75bp
chr16 560734 560734 1 + G A rs141366917 560748 + 560728 560768 41 CCCGGCGTCAGAAGGAGCTCCTGTGCAAGATGGAGAGGGAG CCCGGCATCAGAAGGAGCTCCTGTGCAAGATGGAGAGGGAG < 41bp 1 0.150794746586752 1 0.556317746639252 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:560748 chr16:560734 nonsynonymous SNV 0.022 2 7 hm5C_associated_SNPs_11120 0 0 1 0 2 RAB11FIP3 chr16:560800 5'GT 560800 Upstream 67bp
chr16 601533 601533 1 + G A rs141298471 601540 + 601520 601560 41 GGCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGC GGCTCCGAAACCCATGGGGCCGTTTCTCCTGGAACGGCAGC < 41bp 1 0.020693440298385 1 0.0475730001926422 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601540 chr16:601533 synonymous SNV . 0 14 hm5C_associated_SNPs_11122 0 0 1 0 1 CAPN15 chr16:601512 3'AG 601512 Downstream 22bp
chr16 601533 601533 1 + G A rs141298471 601547 + 601527 601567 41 AAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGCTGGTCCG AAACCCATGGGGCCGTTTCTCCTGGAACGGCAGCTGGTCCG < 41bp 1 0.492619634217184 1 0.865805149078369 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601547 chr16:601533 synonymous SNV . 0 7 hm5C_associated_SNPs_11123 0 0 1 0 1 CAPN15 chr16:601512 3'AG 601512 Downstream 22bp
chr16 601554 601554 1 + C G rs377258156 601540 + 601520 601560 41 GGCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGC GGCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAAGGGCAGC < 41bp 1 0.0248519707317337 1 0.0511763393878937 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601540 chr16:601554 nonsynonymous SNV 0.981 3 35 hm5C_associated_SNPs_11124 0 0 1 0 1 CAPN15 chr16:601512 3'AG 601512 Downstream 43bp
chr16 601554 601554 1 + C G rs377258156 601547 + 601527 601567 41 AAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGCTGGTCCG AAACCCGTGGGGCCGTTTCTCCTGGAAGGGCAGCTGGTCCG < 41bp 1 0.489545926309877 1 0.864394009113312 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601547 chr16:601554 nonsynonymous SNV 0.981 3 28 hm5C_associated_SNPs_11125 0 0 1 0 1 CAPN15 chr16:601512 3'AG 601512 Downstream 43bp
chr16 675985 675985 1 + G A rs149195145 675974 + 675954 675994 41 AGCGGCAGGTCCCGACGGAGCAGGCCCGCGCGTACGCAGAG AGCGGCAGGTCCCGACGGAGCAGGCCCGCGCATACGCAGAG < 41bp 1 0.551877190187569 1 0.710542023181915 experiment 0.896245619624861 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675974 chr16:675985 synonymous SNV . 0 32 hm5C_associated_SNPs_11132 0 0 1 0 2 RAB40C chr16:675899 3'AG 675899 Downstream 87bp
chr16 675985 675985 1 + G A rs149195145 675974 + 675954 675994 41 AGCGGCAGGTCCCGACGGAGCAGGCCCGCGCGTACGCAGAG AGCGGCAGGTCCCGACGGAGCAGGCCCGCGCATACGCAGAG < 41bp 1 0.551877190187569 1 0.710542023181915 experiment 0.896245619624861 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675974 chr16:675985 synonymous SNV . 0 32 hm5C_associated_SNPs_11132 0 0 1 0 2 RAB40C chr16:675956 3'AG 675956 Downstream 30bp
chr16 697823 697823 1 + C T rs374043940 697817 + 697797 697837 41 CAACAGCAGCTGGATGGTGGCCCAGCCGGTGAGGGCGGGCC CAACAGCAGCTGGATGGTGGCCCAGCTGGTGAGGGCGGGCC < 41bp 1 0.253513259548715 1 0.169194400310516 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MCRIP2 ENSG00000172366 CDS Human protein_coding chr16:697817 chr16:697823 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_11136 0 0 1 0 1 MCRIP2 chr16:697783 3'AG 697783 Downstream 41bp
chr16 697823 697823 1 + C T rs374043940 697818 + 697798 697838 41 AACAGCAGCTGGATGGTGGCCCAGCCGGTGAGGGCGGGCCA AACAGCAGCTGGATGGTGGCCCAGCTGGTGAGGGCGGGCCA < 41bp 1 0.249184556719358 1 0.328366458415985 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MCRIP2 ENSG00000172366 CDS Human protein_coding chr16:697818 chr16:697823 nonsynonymous SNV . 0 26 hm5C_associated_SNPs_11137 0 0 1 0 1 MCRIP2 chr16:697783 3'AG 697783 Downstream 41bp
chr16 697823 697823 1 + C T rs374043940 697819 + 697799 697839 41 ACAGCAGCTGGATGGTGGCCCAGCCGGTGAGGGCGGGCCAA ACAGCAGCTGGATGGTGGCCCAGCTGGTGAGGGCGGGCCAA < 41bp 1 0.569718875395801 1 0.492022305727005 experiment 0.860562249208398 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MCRIP2 ENSG00000172366 CDS Human protein_coding chr16:697819 chr16:697823 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_11138 0 0 1 0 1 MCRIP2 chr16:697783 3'AG 697783 Downstream 41bp
chr16 697823 697823 1 + C T rs374043940 697836 + 697816 697856 41 GCCCAGCCGGTGAGGGCGGGCCAAGGCCTGTGCAGTACGTG GCCCAGCTGGTGAGGGCGGGCCAAGGCCTGTGCAGTACGTG < 41bp 1 0.192365640496114 1 0.35424280166626 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MCRIP2 ENSG00000172366 CDS Human protein_coding chr16:697836 chr16:697823 nonsynonymous SNV . 0 8 hm5C_associated_SNPs_11139 0 0 1 0 1 MCRIP2 chr16:697783 3'AG 697783 Downstream 41bp
chr16 697823 697823 1 + C T rs374043940 697837 + 697817 697857 41 CCCAGCCGGTGAGGGCGGGCCAAGGCCTGTGCAGTACGTGG CCCAGCTGGTGAGGGCGGGCCAAGGCCTGTGCAGTACGTGG < 41bp 1 0.655645318898271 1 0.603377401828766 experiment 0.688709362203457 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MCRIP2 ENSG00000172366 CDS Human protein_coding chr16:697837 chr16:697823 nonsynonymous SNV . 0 7 hm5C_associated_SNPs_11140 0 0 1 0 1 MCRIP2 chr16:697783 3'AG 697783 Downstream 41bp
chr16 699384 699384 1 + G A rs73487415 699380 + 699360 699400 41 GGCGTACTCTGCGCTGGGCGCGCGGAGGCCTAGGCGGGAAG GGCGTACTCTGCGCTGGGCGCGCGAAGGCCTAGGCGGGAAG < 41bp 1 0.773942213077516 1 0.79243129491806 experiment 0.452115573844968 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WDR90 ENSG00000161996 UTR5 Human protein_coding chr16:699380 chr16:699384 . . 0 25 hm5C_associated_SNPs_11141 0 0 0 0 1 WDR90 chr16:699426 5'GT 699426 Upstream 43bp
chr16 700614 700614 1 + A T rs184261872 700606 + 700586 700626 41 CTCGATCTGCAGGACGTTCTCCTGGTCTACCTGAACCGGTG CTCGATCTGCAGGACGTTCTCCTGGTCTTCCTGAACCGGTG < 41bp 1 0.499759722213513 1 0.764961719512939 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:700606 chr16:700614 nonsynonymous SNV 0.160 0 29 hm5C_associated_SNPs_11142 0 0 0 0 2 WDR90 chr16:700539 3'AG 700539 Downstream 76bp
chr16 700614 700614 1 + A T rs184261872 700606 + 700586 700626 41 CTCGATCTGCAGGACGTTCTCCTGGTCTACCTGAACCGGTG CTCGATCTGCAGGACGTTCTCCTGGTCTTCCTGAACCGGTG < 41bp 1 0.499759722213513 1 0.764961719512939 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:700606 chr16:700614 nonsynonymous SNV 0.160 0 29 hm5C_associated_SNPs_11142 0 0 0 0 2 WDR90 chr16:700709 5'GT 700709 Upstream 96bp
chr16 705360 705360 1 + T A rs3803697 705347 + 705327 705367 41 GCAGTGTGCGGCTCTGGCGGCTGCGTGGCGGGGTGCTGCGT GCAGTGTGCGGCTCTGGCGGCTGCGTGGCGGGGAGCTGCGT < 41bp 1 0.442539917395817 1 0.410232573747635 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:705347 chr16:705360 nonsynonymous SNV 0.000 0 34 hm5C_associated_SNPs_11143 0 0 1 0 1 WDR90 chr16:705307 3'AG 705307 Downstream 54bp
chr16 705361 705361 1 + G A rs181867252 705347 + 705327 705367 41 GCAGTGTGCGGCTCTGGCGGCTGCGTGGCGGGGTGCTGCGT GCAGTGTGCGGCTCTGGCGGCTGCGTGGCGGGGTACTGCGT < 41bp 1 0.451034459905451 1 0.463468164205551 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:705347 chr16:705361 synonymous SNV . 0 35 hm5C_associated_SNPs_11144 0 0 1 0 1 WDR90 chr16:705307 3'AG 705307 Downstream 55bp
chr16 712775 712775 1 + G A rs181214791 712768 + 712748 712788 41 GGACATGGGCGTCGTGGGCACCACGGCGGGCACGCTGTGGT GGACATGGGCGTCGTGGGCACCACGGCAGGCACGCTGTGGT < 41bp 1 0.195559240517016 1 0.190983980894089 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:712768 chr16:712775 synonymous SNV . 0 28 hm5C_associated_SNPs_11145 0 0 1 0 2 WDR90 chr16:712679 3'AG 712679 Downstream 97bp
chr16 712775 712775 1 + G A rs181214791 712768 + 712748 712788 41 GGACATGGGCGTCGTGGGCACCACGGCGGGCACGCTGTGGT GGACATGGGCGTCGTGGGCACCACGGCAGGCACGCTGTGGT < 41bp 1 0.195559240517016 1 0.190983980894089 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:712768 chr16:712775 synonymous SNV . 0 28 hm5C_associated_SNPs_11145 0 0 1 0 2 WDR90 chr16:712844 5'GT 712844 Upstream 70bp
chr16 712780 712780 1 + C A rs576866547 712768 + 712748 712788 41 GGACATGGGCGTCGTGGGCACCACGGCGGGCACGCTGTGGT GGACATGGGCGTCGTGGGCACCACGGCGGGCAAGCTGTGGT < 41bp 1 0.191804393331218 1 0.199606359004974 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:712768 chr16:712780 nonsynonymous SNV 0.001 3 33 hm5C_associated_SNPs_11146 0 0 1 0 1 WDR90 chr16:712844 5'GT 712844 Upstream 65bp
chr16 722942 722942 1 + C T rs79058341 722951 + 722931 722971 41 CATTACATGGACGGGCAGACCCCCTGCCTCTTTGTCTCCTC CATTACATGGATGGGCAGACCCCCTGCCTCTTTGTCTCCTC < 41bp 1 0.337943047533748 1 0.0842556059360504 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:722951 chr16:722942 synonymous SNV . 0 12 hm5C_associated_SNPs_11151 0 0 1 0 1 RHOT2 chr16:722928 3'AG 722928 Downstream 15bp
chr16 722958 722958 1 + C G rs55977091 722951 + 722931 722971 41 CATTACATGGACGGGCAGACCCCCTGCCTCTTTGTCTCCTC CATTACATGGACGGGCAGACCCCCTGCGTCTTTGTCTCCTC < 41bp 1 0.393971270538546 1 0.174207389354706 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:722951 chr16:722958 nonsynonymous SNV 0.952 1 28 hm5C_associated_SNPs_11152 0 0 1 0 1 RHOT2 chr16:722928 3'AG 722928 Downstream 31bp
chr16 722997 722997 1 + G A rs61745203 723004 + 722984 723024 41 GCCCGAAGGTGTCGCGGTGTCTGGCCCATCACCGGCCGAGT GCCCGAAGGTGTCACGGTGTCTGGCCCATCACCGGCCGAGT < 41bp 1 0.667903551113069 1 0.367519199848175 experiment 0.664192897773862 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:723004 chr16:722997 nonsynonymous SNV 0.000 1 14 hm5C_associated_SNPs_11153 0 0 1 0 1 RHOT2 chr16:722928 3'AG 722928 Downstream 70bp
chr16 723017 723017 1 + G A rs201357594 723004 + 722984 723024 41 GCCCGAAGGTGTCGCGGTGTCTGGCCCATCACCGGCCGAGT GCCCGAAGGTGTCGCGGTGTCTGGCCCATCACCAGCCGAGT < 41bp 1 0.690436601188116 1 0.544352829456329 experiment 0.619126797623768 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:723004 chr16:723017 synonymous SNV . 0 34 hm5C_associated_SNPs_11154 0 0 0 0 1 RHOT2 chr16:722928 3'AG 722928 Downstream 90bp
chr16 723021 723021 1 + G A rs145260729 723004 + 722984 723024 41 GCCCGAAGGTGTCGCGGTGTCTGGCCCATCACCGGCCGAGT GCCCGAAGGTGTCGCGGTGTCTGGCCCATCACCGGCCAAGT < 41bp 1 0.72239399075256 1 0.450483173131943 experiment 0.555212018494879 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:723004 chr16:723021 nonsynonymous SNV 0.576 2 38 hm5C_associated_SNPs_11155 0 0 1 0 1 RHOT2 chr16:722928 3'AG 722928 Downstream 94bp
chr16 816654 816654 1 + G A rs552757404 816657 + 816637 816677 41 CCACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCC CCACAAGGCTCCTCGGCAGCCCCTCCCACAGGTGGCCACCC < 41bp 1 0.0243442225751865 1 0.193900436162949 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816657 chr16:816654 nonsynonymous SNV 0.161 0 18 hm5C_associated_SNPs_11164 0 0 0 0 1 MSLN chr16:816644 3'AG 816644 Downstream 11bp
chr16 816654 816654 1 + G A rs552757404 816658 + 816638 816678 41 CACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCCT CACAAGGCTCCTCGGCAGCCCCTCCCACAGGTGGCCACCCT < 41bp 1 0.0136734532980053 1 0.0449402034282684 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816658 chr16:816654 nonsynonymous SNV 0.161 0 17 hm5C_associated_SNPs_11165 0 0 0 0 1 MSLN chr16:816644 3'AG 816644 Downstream 11bp
chr16 842508 842508 1 + G T rs34595992 842525 + 842505 842545 41 CCGGCTGTGCCTTCGGGAGGCGGCCGACGGCGCCGGGCAGA CCGTCTGTGCCTTCGGGAGGCGGCCGACGGCGCCGGGCAGA < 41bp 1 0.527187012120085 1 0.717051863670349 experiment 0.94562597575983 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842525 chr16:842508 nonsynonymous SNV 0.000 0 4 hm5C_associated_SNPs_11166 0 0 1 0 2 CHTF18 chr16:842439 3'AG 842439 Downstream 70bp
chr16 842508 842508 1 + G T rs34595992 842525 + 842505 842545 41 CCGGCTGTGCCTTCGGGAGGCGGCCGACGGCGCCGGGCAGA CCGTCTGTGCCTTCGGGAGGCGGCCGACGGCGCCGGGCAGA < 41bp 1 0.527187012120085 1 0.717051863670349 experiment 0.94562597575983 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842525 chr16:842508 nonsynonymous SNV 0.000 0 4 hm5C_associated_SNPs_11166 0 0 1 0 2 CHTF18 chr16:842590 5'GT 842590 Upstream 83bp
chr16 842518 842518 1 + C T rs35387463 842525 + 842505 842545 41 CCGGCTGTGCCTTCGGGAGGCGGCCGACGGCGCCGGGCAGA CCGGCTGTGCCTTTGGGAGGCGGCCGACGGCGCCGGGCAGA < 41bp 1 0.514369507841749 1 0.731044709682465 experiment 0.971260984316502 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842525 chr16:842518 nonsynonymous SNV 0.000 0 14 hm5C_associated_SNPs_11167 0 0 1 0 2 CHTF18 chr16:842439 3'AG 842439 Downstream 80bp
chr16 842518 842518 1 + C T rs35387463 842525 + 842505 842545 41 CCGGCTGTGCCTTCGGGAGGCGGCCGACGGCGCCGGGCAGA CCGGCTGTGCCTTTGGGAGGCGGCCGACGGCGCCGGGCAGA < 41bp 1 0.514369507841749 1 0.731044709682465 experiment 0.971260984316502 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842525 chr16:842518 nonsynonymous SNV 0.000 0 14 hm5C_associated_SNPs_11167 0 0 1 0 2 CHTF18 chr16:842590 5'GT 842590 Upstream 73bp
chr16 845153 845153 1 + C A rs540750304 845172 + 845152 845192 41 GCGTCTGCGGCTGCGAGACTCCAGCCTGGGTGCTGTGTGTG GAGTCTGCGGCTGCGAGACTCCAGCCTGGGTGCTGTGTGTG < 41bp 1 0.259966290043537 1 0.240950882434845 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845172 chr16:845153 nonsynonymous SNV 0.728 0 2 hm5C_associated_SNPs_11168 0 0 1 0 1 CHTF18 chr16:845132 3'AG 845132 Downstream 22bp
chr16 845154 845154 1 + G A rs565850771 845172 + 845152 845192 41 GCGTCTGCGGCTGCGAGACTCCAGCCTGGGTGCTGTGTGTG GCATCTGCGGCTGCGAGACTCCAGCCTGGGTGCTGTGTGTG < 41bp 1 0.295869733356846 1 0.275470823049545 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845172 chr16:845154 nonsynonymous SNV 0.583 0 3 hm5C_associated_SNPs_11169 0 0 1 0 1 CHTF18 chr16:845132 3'AG 845132 Downstream 23bp
chr16 845761 845761 1 + G A rs200036540 845778 + 845758 845798 41 GCCGGGCCACGCCCCAGGCCCTGCTCCTCGATGCCCTCTGC GCCAGGCCACGCCCCAGGCCCTGCTCCTCGATGCCCTCTGC < 41bp 1 0.40087689223515 1 0.0556770861148834 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845778 chr16:845761 nonsynonymous SNV 0.182 0 4 hm5C_associated_SNPs_11170 0 0 1 0 2 CHTF18 chr16:845685 3'AG 845685 Downstream 77bp
chr16 845761 845761 1 + G A rs200036540 845778 + 845758 845798 41 GCCGGGCCACGCCCCAGGCCCTGCTCCTCGATGCCCTCTGC GCCAGGCCACGCCCCAGGCCCTGCTCCTCGATGCCCTCTGC < 41bp 1 0.40087689223515 1 0.0556770861148834 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845778 chr16:845761 nonsynonymous SNV 0.182 0 4 hm5C_associated_SNPs_11170 0 0 1 0 2 CHTF18 chr16:845834 5'GT 845834 Upstream 74bp
chr16 845797 845797 1 + G A rs61741082 845778 + 845758 845798 41 GCCGGGCCACGCCCCAGGCCCTGCTCCTCGATGCCCTCTGC GCCGGGCCACGCCCCAGGCCCTGCTCCTCGATGCCCTCTAC < 41bp 1 0.425523156910497 1 0.0544635355472565 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845778 chr16:845797 nonsynonymous SNV 0.095 1 40 hm5C_associated_SNPs_11171 0 0 1 0 1 CHTF18 chr16:845834 5'GT 845834 Upstream 38bp
chr16 845819 845819 1 + A G rs2294446 845820 + 845800 845840 41 TGCTCCTGGACATTCTTGCACCCAAGCTCCGCCCCGTGAGT TGCTCCTGGACATTCTTGCGCCCAAGCTCCGCCCCGTGAGT < 41bp 1 0.226427159857023 1 0.0804927945137024 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845820 chr16:845819 synonymous SNV . 0 20 hm5C_associated_SNPs_11172 0 0 1 0 1 CHTF18 chr16:845834 5'GT 845834 Upstream 16bp
chr16 845832 845832 1 + C A rs577654496 845820 + 845800 845840 41 TGCTCCTGGACATTCTTGCACCCAAGCTCCGCCCCGTGAGT TGCTCCTGGACATTCTTGCACCCAAGCTCCGCACCGTGAGT < 41bp 1 0.237198346239905 1 0.0874706506729126 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845820 chr16:845832 nonsynonymous SNV 0.373 4 33 hm5C_associated_SNPs_11173 0 0 1 0 1 CHTF18 chr16:845834 5'GT 845834 Upstream 3bp
chr16 1364007 1364007 1 + C G rs200918704 1364009 + 1363989 1364029 41 CCTGACCCCGTGCTCTGCCTCCTGTGTTCCAGGGACTTTGA CCTGACCCCGTGCTCTGCGTCCTGTGTTCCAGGGACTTTGA < 41bp 1 0.0852531595490716 1 0.0440954864025116 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UBE2I ENSG00000103275 UTR5 Human protein_coding chr16:1364009 chr16:1364007 . . 0 19 hm5C_associated_SNPs_11175 0 0 1 0 1 UBE2I chr16:1364097 5'GT 1364097 Upstream 91bp
chr16 1395257 1395257 1 + C A rs145807489 1395256 + 1395236 1395276 41 CCCTCCCACCACAGGGACAGCCGCTCTCTGGCCCTGGCTGG CCCTCCCACCACAGGGACAGCAGCTCTCTGGCCCTGGCTGG < 41bp 1 0.368723759974217 1 0.391130745410919 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1395256 chr16:1395257 nonsynonymous SNV 0.939 1 22 hm5C_associated_SNPs_11176 0 0 0 0 1 BAIAP3 chr16:1395250 3'AG 1395250 Downstream 8bp
chr16 1397810 1397810 1 + C A rs574931188 1397801 + 1397781 1397821 41 AGGTGCTGCACGCCGCGGACCTGCTCCCCCTGGACGCCAAC AGGTGCTGCACGCCGCGGACCTGCTCCCCATGGACGCCAAC < 41bp 1 0.289743319968018 1 0.0397980511188507 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1397801 chr16:1397810 nonsynonymous SNV 0.103 4 30 hm5C_associated_SNPs_11177 0 0 0 0 1 BAIAP3 chr16:1397822 5'GT 1397822 Upstream 13bp
chr16 1397815 1397815 1 + C T rs1132358 1397801 + 1397781 1397821 41 AGGTGCTGCACGCCGCGGACCTGCTCCCCCTGGACGCCAAC AGGTGCTGCACGCCGCGGACCTGCTCCCCCTGGATGCCAAC < 41bp 1 0.288722532287094 1 0.0853068232536316 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1397801 chr16:1397815 synonymous SNV . 0 35 hm5C_associated_SNPs_11178 0 0 0 0 1 BAIAP3 chr16:1397822 5'GT 1397822 Upstream 8bp
chr16 1411894 1411894 1 + G A rs76594024 1411910 + 1411890 1411930 41 GCCCGTTCCACAACGTGACCCAGCACGAGCAGACCTTCCGC GCCCATTCCACAACGTGACCCAGCACGAGCAGACCTTCCGC < 41bp 1 0.787488804542515 1 0.758144974708557 experiment 0.42502239091497 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GNPTG ENSG00000090581 CDS Human protein_coding chr16:1411910 chr16:1411894 synonymous SNV . 0 5 hm5C_associated_SNPs_11179 1 0 1 0 2 GNPTG chr16:1411873 3'AG 1411873 Downstream 22bp
chr16 1411894 1411894 1 + G A rs76594024 1411910 + 1411890 1411930 41 GCCCGTTCCACAACGTGACCCAGCACGAGCAGACCTTCCGC GCCCATTCCACAACGTGACCCAGCACGAGCAGACCTTCCGC < 41bp 1 0.787488804542515 1 0.758144974708557 experiment 0.42502239091497 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GNPTG ENSG00000090581 CDS Human protein_coding chr16:1411910 chr16:1411894 synonymous SNV . 0 5 hm5C_associated_SNPs_11179 1 0 1 0 2 GNPTG chr16:1411956 5'GT 1411956 Upstream 63bp
chr16 1556286 1556286 1 + C A rs141481758 1556292 + 1556272 1556312 41 AGCAGATTCAACTCCGTGGCCGGCCACTTCTTCTTCCCCCT AGCAGATTCAACTCAGTGGCCGGCCACTTCTTCTTCCCCCT < 41bp 1 0.312693266064828 1 0.373676866292953 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1556292 chr16:1556286 nonsynonymous SNV . 0 15 hm5C_associated_SNPs_11184 0 0 1 0 1 TELO2 chr16:1556330 5'GT 1556330 Upstream 45bp
chr16 1817166 1817166 1 + G A rs559241066 1817164 + 1817144 1817184 41 CTCCAGATGGCCAGTGGGATCTGAGCAACTATCACCTAATG CTCCAGATGGCCAGTGGGATCTAAGCAACTATCACCTAATG < 41bp 1 0.369936030216388 1 0.286356925964355 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1817164 chr16:1817166 synonymous SNV . 0 23 hm5C_associated_SNPs_11189 0 0 0 0 1 MAPK8IP3 chr16:1817150 3'AG 1817150 Downstream 17bp
chr16 1825290 1825290 1 + G A rs3803571 1825308 + 1825288 1825328 41 GCGGGGAGGAATGGTCACCTCTGCTCAGGTCTCGCCAGCAC GCAGGGAGGAATGGTCACCTCTGCTCAGGTCTCGCCAGCAC < 41bp 1 0.771659259478954 1 0.265077263116837 experiment 0.456681481042092 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EME2 ENSG00000197774 CDS Human protein_coding chr16:1825308 chr16:1825290 nonsynonymous SNV . 0 3 hm5C_associated_SNPs_11192 0 0 1 0 1 EME2 chr16:1825240 3'AG 1825240 Downstream 51bp
chr16 1825293 1825293 1 + G A rs530913047 1825308 + 1825288 1825328 41 GCGGGGAGGAATGGTCACCTCTGCTCAGGTCTCGCCAGCAC GCGGGAAGGAATGGTCACCTCTGCTCAGGTCTCGCCAGCAC < 41bp 1 0.777755321112478 1 0.303867995738983 experiment 0.444489357775043 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EME2 ENSG00000197774 CDS Human protein_coding chr16:1825308 chr16:1825293 nonsynonymous SNV . 0 6 hm5C_associated_SNPs_11193 0 0 1 0 1 EME2 chr16:1825240 3'AG 1825240 Downstream 54bp
chr16 1825321 1825321 1 + G A rs141898850 1825308 + 1825288 1825328 41 GCGGGGAGGAATGGTCACCTCTGCTCAGGTCTCGCCAGCAC GCGGGGAGGAATGGTCACCTCTGCTCAGGTCTCACCAGCAC < 41bp 1 0.743355053812804 1 0.309544384479523 experiment 0.513289892374391 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EME2 ENSG00000197774 CDS Human protein_coding chr16:1825308 chr16:1825321 nonsynonymous SNV 0.901 0 34 hm5C_associated_SNPs_11194 0 0 1 0 3 EME2 chr16:1825240 3'AG 1825240 Downstream 82bp
chr16 1825321 1825321 1 + G A rs141898850 1825308 + 1825288 1825328 41 GCGGGGAGGAATGGTCACCTCTGCTCAGGTCTCGCCAGCAC GCGGGGAGGAATGGTCACCTCTGCTCAGGTCTCACCAGCAC < 41bp 1 0.743355053812804 1 0.309544384479523 experiment 0.513289892374391 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EME2 ENSG00000197774 CDS Human protein_coding chr16:1825308 chr16:1825321 nonsynonymous SNV 0.901 0 34 hm5C_associated_SNPs_11194 0 0 1 0 3 EME2 chr16:1825316 3'AG 1825316 Downstream 6bp
chr16 1825321 1825321 1 + G A rs141898850 1825308 + 1825288 1825328 41 GCGGGGAGGAATGGTCACCTCTGCTCAGGTCTCGCCAGCAC GCGGGGAGGAATGGTCACCTCTGCTCAGGTCTCACCAGCAC < 41bp 1 0.743355053812804 1 0.309544384479523 experiment 0.513289892374391 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EME2 ENSG00000197774 CDS Human protein_coding chr16:1825308 chr16:1825321 nonsynonymous SNV 0.901 0 34 hm5C_associated_SNPs_11194 0 0 1 0 3 EME2 chr16:1825409 5'GT 1825409 Upstream 89bp
chr16 1889362 1889362 1 + G T rs376572512 1889342 + 1889322 1889362 41 ATCAGTCAGATCAATCAGCACATGGAAACTGAGAAAGACAG ATCAGTCAGATCAATCAGCACATGGAAACTGAGAAAGACAT < 41bp 1 0.476002018680569 1 0.105341672897339 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MEIOB ENSG00000162039 CDS Human other chr16:1889342 chr16:1889362 nonsynonymous SNV 0.797 3 41 hm5C_associated_SNPs_11196 0 0 0 0 1 FAHD1;MEIOB chr16:1889263 3'AG 1889263 Downstream 100bp
chr16 2011269 2011269 1 + C T rs201009092 2011276 + 2011256 2011296 41 GCATGTATGAAGCCGAAATGCAGTGGAAGAGGGACTAGTAC GCATGTATGAAGCTGAAATGCAGTGGAAGAGGGACTAGTAC < 41bp 1 0.712272705169482 1 0.510891914367676 experiment 0.575454589661036 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011276 chr16:2011269 synonymous SNV . 0 14 hm5C_associated_SNPs_11197 0 0 1 0 1 NDUFB10 chr16:2011292 5'GT 2011292 Upstream 24bp
chr16 2079770 2079770 1 + A G rs559412284 2079750 + 2079730 2079770 41 CCGAAGCCAGACTGGGCACACACCGGCAGCCACAGCTCCGA CCGAAGCCAGACTGGGCACACACCGGCAGCCACAGCTCCGG < 41bp 1 0.702747340254405 1 0.188594311475754 experiment 0.594505319491189 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC9A3R2 ENSG00000065054 CDS Human protein_coding chr16:2079750 chr16:2079770 nonsynonymous SNV 0.002 1 41 hm5C_associated_SNPs_11218 0 0 0 0 1 SLC9A3R2 chr16:2079783 5'GT 2079783 Upstream 14bp
chr16 2106216 2106216 1 + G A rs139929314 2106203 + 2106183 2106223 41 GGTGCTCCCTGCAGGATGATCTGTCTGCTGTGCGTCCGGAC GGTGCTCCCTGCAGGATGATCTGTCTGCTGTGCATCCGGAC < 41bp 1 0.244354962437337 1 0.236528247594833 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2106203 chr16:2106216 nonsynonymous SNV 0.564 0 34 hm5C_associated_SNPs_11219 0 0 1 0 2 TSC2 chr16:2106197 3'AG 2106197 Downstream 20bp
chr16 2106216 2106216 1 + G A rs139929314 2106203 + 2106183 2106223 41 GGTGCTCCCTGCAGGATGATCTGTCTGCTGTGCGTCCGGAC GGTGCTCCCTGCAGGATGATCTGTCTGCTGTGCATCCGGAC < 41bp 1 0.244354962437337 1 0.236528247594833 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2106203 chr16:2106216 nonsynonymous SNV 0.564 0 34 hm5C_associated_SNPs_11219 0 0 1 0 2 TSC2 chr16:2106245 5'GT 2106245 Upstream 30bp
chr16 2255420 2255420 1 + G A rs533296599 2255429 + 2255409 2255449 41 GTCTCGCCCTAGGGAGCCATCGATAACTCTACGCTCGGCCT GTCTCGCCCTAAGGAGCCATCGATAACTCTACGCTCGGCCT < 41bp 1 0.633568233099948 1 0.807881951332092 experiment 0.732863533800104 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MLST8 ENSG00000167965 splicing Human protein_coding chr16:2255429 chr16:2255420 . . 0 12 hm5C_associated_SNPs_11220 0 0 0 0 1 MLST8 chr16:2255513 5'GT 2255513 Upstream 94bp
chr16 2284192 2284192 1 + G A rs137969975 2284209 + 2284189 2284229 41 TGCGCGCAGTGTGGCAAGGCCTTCCCCAAGGCCTACCTGCT TGCACGCAGTGTGGCAAGGCCTTCCCCAAGGCCTACCTGCT < 41bp 1 0.0515984913662152 1 0.0898837149143219 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control E4F1 ENSG00000167967 CDS Human protein_coding chr16:2284209 chr16:2284192 nonsynonymous SNV 0.000 0 4 hm5C_associated_SNPs_11224 0 0 1 0 1 E4F1 chr16:2284172 3'AG 2284172 Downstream 21bp
chr16 2284192 2284192 1 + G A rs137969975 2284212 + 2284192 2284232 41 GCGCAGTGTGGCAAGGCCTTCCCCAAGGCCTACCTGCTCAA ACGCAGTGTGGCAAGGCCTTCCCCAAGGCCTACCTGCTCAA < 41bp 1 0.620495220539956 1 0.249243944883347 experiment 0.759009558920088 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control E4F1 ENSG00000167967 CDS Human protein_coding chr16:2284212 chr16:2284192 nonsynonymous SNV 0.000 0 1 hm5C_associated_SNPs_11225 0 0 1 0 1 E4F1 chr16:2284172 3'AG 2284172 Downstream 21bp
chr16 2511194 2511194 1 + G A rs77567924 2511197 + 2511177 2511217 41 CATCCGCTGCTCCTCAGGCCCCAGAAGCCTTCACACTCAAG CATCCGCTGCTCCTCAGACCCCAGAAGCCTTCACACTCAAG < 41bp 1 0.339516470734352 1 0.447259694337845 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2511197 chr16:2511194 nonsynonymous SNV 0.007 0 18 hm5C_associated_SNPs_11228 0 0 0 0 1 C16orf59 chr16:2511225 5'GT 2511225 Upstream 32bp
chr16 2564095 2564095 1 + A G rs11546341 2564089 + 2564069 2564109 41 CGGCCCGCAGAGCTTGCCCCCTCCCCACCCGCAGACATGTC CGGCCCGCAGAGCTTGCCCCCTCCCCGCCCGCAGACATGTC < 41bp 1 0.397517094979539 1 0.263631582260132 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP6V0C ENSG00000185883;ENSG00000259784 UTR5 Human other chr16:2564089 chr16:2564095 . . 0 27 hm5C_associated_SNPs_11230 0 0 1 0 2 ATP6V0C chr16:2564081 3'AG 2564081 Downstream 15bp
chr16 2564095 2564095 1 + A G rs11546341 2564089 + 2564069 2564109 41 CGGCCCGCAGAGCTTGCCCCCTCCCCACCCGCAGACATGTC CGGCCCGCAGAGCTTGCCCCCTCCCCGCCCGCAGACATGTC < 41bp 1 0.397517094979539 1 0.263631582260132 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP6V0C ENSG00000185883;ENSG00000259784 UTR5 Human other chr16:2564089 chr16:2564095 . . 0 27 hm5C_associated_SNPs_11230 0 0 1 0 2 ATP6V0C chr16:2564183 5'GT 2564183 Upstream 89bp
chr16 2577854 2577854 1 + G A rs148567595 2577853 + 2577833 2577873 41 CACCTCCGCTCCTTCGAGGCCGATGCCTTCCAGGACTTGCT CACCTCCGCTCCTTCGAGGCCAATGCCTTCCAGGACTTGCT < 41bp 1 0.0943292401329214 1 0.0887404978275299 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2577853 chr16:2577854 nonsynonymous SNV 0.831 0 22 hm5C_associated_SNPs_11231 0 0 1 0 1 AMDHD2 chr16:2577774 3'AG 2577774 Downstream 81bp
chr16 2636802 2636802 1 + C T rs532663585 2636784 + 2636764 2636804 41 CCCCAGAGGTCAGGCAGCAACATAGAGCAGTACATTCACGA CCCCAGAGGTCAGGCAGCAACATAGAGCAGTACATTCATGA < 41bp 1 0.236662324661899 1 0.251347988843918 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDPK1 ENSG00000140992 CDS Human protein_coding chr16:2636784 chr16:2636802 synonymous SNV . 0 39 hm5C_associated_SNPs_11232 0 0 1 0 1 PDPK1 chr16:2636894 5'GT 2636894 Upstream 93bp
chr16 2732753 2732753 1 + C A rs538915638 2732745 + 2732725 2732765 41 GGCAGACCCTGTGCCGGGACCCGAAATCCTTCCTGTACCGC GGCAGACCCTGTGCCGGGACCCGAAATCATTCCTGTACCGC < 41bp 1 0.519084920870398 1 0.422842562198639 experiment 0.961830158259204 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD5 ENSG00000167977 CDS Human protein_coding chr16:2732745 chr16:2732753 synonymous SNV . 0 29 hm5C_associated_SNPs_11233 0 0 1 0 1 KCTD5 chr16:2732801 5'GT 2732801 Upstream 49bp
chr16 2964283 2964283 1 + G A rs2074365 2964282 + 2964262 2964302 41 ATGGTGACGCTTCTCACTCACGTGTGAAGGTAATTCTGTGG ATGGTGACGCTTCTCACTCACATGTGAAGGTAATTCTGTGG < 41bp 1 0.339561277502381 1 0.257580697536469 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLYWCH1 ENSG00000059122 UTR5 Human protein_coding chr16:2964282 chr16:2964283 . . 0 22 hm5C_associated_SNPs_11246 0 0 1 0 1 FLYWCH1 chr16:2964290 5'GT 2964290 Upstream 8bp
chr16 3707257 3707257 1 + C A rs148373909 3707253 + 3707233 3707273 41 AGACCCTCCCAGTGGTCATCCATCCGCCTGTGGACAAGCCC AGACCCTCCCAGTGGTCATCCATCAGCCTGTGGACAAGCCC < 41bp 1 0.503594809690394 1 0.0612652003765106 experiment 0.992810380619213 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707253 chr16:3707257 nonsynonymous SNV 0.396 4 25 hm5C_associated_SNPs_11460 0 0 1 0 2 DNASE1 chr16:3707188 3'AG 3707188 Downstream 70bp
chr16 3707257 3707257 1 + C A rs148373909 3707253 + 3707233 3707273 41 AGACCCTCCCAGTGGTCATCCATCCGCCTGTGGACAAGCCC AGACCCTCCCAGTGGTCATCCATCAGCCTGTGGACAAGCCC < 41bp 1 0.503594809690394 1 0.0612652003765106 experiment 0.992810380619213 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707253 chr16:3707257 nonsynonymous SNV 0.396 4 25 hm5C_associated_SNPs_11460 0 0 1 0 2 DNASE1 chr16:3707342 5'GT 3707342 Upstream 86bp
chr16 3707262 3707262 1 + G A rs8176920 3707253 + 3707233 3707273 41 AGACCCTCCCAGTGGTCATCCATCCGCCTGTGGACAAGCCC AGACCCTCCCAGTGGTCATCCATCCGCCTATGGACAAGCCC < 41bp 1 0.149521018042497 1 0.114675521850586 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707253 chr16:3707262 synonymous SNV . 0 30 hm5C_associated_SNPs_11461 0 0 1 0 2 DNASE1 chr16:3707188 3'AG 3707188 Downstream 75bp
chr16 3707262 3707262 1 + G A rs8176920 3707253 + 3707233 3707273 41 AGACCCTCCCAGTGGTCATCCATCCGCCTGTGGACAAGCCC AGACCCTCCCAGTGGTCATCCATCCGCCTATGGACAAGCCC < 41bp 1 0.149521018042497 1 0.114675521850586 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707253 chr16:3707262 synonymous SNV . 0 30 hm5C_associated_SNPs_11461 0 0 1 0 2 DNASE1 chr16:3707342 5'GT 3707342 Upstream 81bp
chr16 3707747 3707747 1 + G A rs1053874 3707766 + 3707746 3707786 41 CGAGGCGCCGTTGTTCCCGACTCGGCTCTTCCCTTTAACTT CAAGGCGCCGTTGTTCCCGACTCGGCTCTTCCCTTTAACTT < 41bp 1 0.599271638209878 1 0.453109264373779 experiment 0.801456723580243 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707766 chr16:3707747 nonsynonymous SNV 0.014 0 2 hm5C_associated_SNPs_11462 1 0 0 0 2 DNASE1 chr16:3707721 3'AG 3707721 Downstream 27bp
chr16 3707747 3707747 1 + G A rs1053874 3707766 + 3707746 3707786 41 CGAGGCGCCGTTGTTCCCGACTCGGCTCTTCCCTTTAACTT CAAGGCGCCGTTGTTCCCGACTCGGCTCTTCCCTTTAACTT < 41bp 1 0.599271638209878 1 0.453109264373779 experiment 0.801456723580243 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707766 chr16:3707747 nonsynonymous SNV 0.014 0 2 hm5C_associated_SNPs_11462 1 0 0 0 2 DNASE1 chr16:3707817 5'GT 3707817 Upstream 71bp
chr16 3707763 3707763 1 + C A rs201975812 3707766 + 3707746 3707786 41 CGAGGCGCCGTTGTTCCCGACTCGGCTCTTCCCTTTAACTT CGAGGCGCCGTTGTTCCAGACTCGGCTCTTCCCTTTAACTT < 41bp 1 0.714897357428565 1 0.370507657527924 experiment 0.57020528514287 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707766 chr16:3707763 synonymous SNV . 0 18 hm5C_associated_SNPs_11463 0 0 1 0 2 DNASE1 chr16:3707721 3'AG 3707721 Downstream 43bp
chr16 3707763 3707763 1 + C A rs201975812 3707766 + 3707746 3707786 41 CGAGGCGCCGTTGTTCCCGACTCGGCTCTTCCCTTTAACTT CGAGGCGCCGTTGTTCCAGACTCGGCTCTTCCCTTTAACTT < 41bp 1 0.714897357428565 1 0.370507657527924 experiment 0.57020528514287 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707766 chr16:3707763 synonymous SNV . 0 18 hm5C_associated_SNPs_11463 0 0 1 0 2 DNASE1 chr16:3707817 5'GT 3707817 Upstream 55bp
chr16 4476089 4476089 1 + T C rs1139652 4476087 + 4476067 4476107 41 CATTGAGACCTGGTGTCAGCCTTACAGGTGAGGGCAGGTTC CATTGAGACCTGGTGTCAGCCTCACAGGTGAGGGCAGGTTC < 41bp 1 0.462460448631836 1 0.513574421405792 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control DNAJA3 ENSG00000103423 CDS Human protein_coding chr16:4476087 chr16:4476089 nonsynonymous SNV 0.896 1 23 hm5C_associated_SNPs_11470 0 1 1 0 1 DNAJA3 chr16:4476093 5'GT 4476093 Upstream 5bp
chr16 4476089 4476089 1 + T C rs1139652 4476091 + 4476071 4476111 41 GAGACCTGGTGTCAGCCTTACAGGTGAGGGCAGGTTCCAAC GAGACCTGGTGTCAGCCTCACAGGTGAGGGCAGGTTCCAAC < 41bp 1 0.799020238137516 1 0.579722285270691 experiment 0.401959523724969 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control DNAJA3 ENSG00000103423 CDS Human protein_coding chr16:4476091 chr16:4476089 nonsynonymous SNV 0.896 1 19 hm5C_associated_SNPs_11471 0 1 1 0 1 DNAJA3 chr16:4476093 5'GT 4476093 Upstream 5bp
chr16 4552920 4552920 1 + C A rs551921972 4552928 + 4552908 4552948 41 CCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAG CCCAGGTTCAAGAGATTCTCCTGCCTCAGCCTCCTGAGTAG < 41bp 1 0.410867291256753 1 0.0706405937671661 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMOX2 ENSG00000103415 UTR5 Human protein_coding chr16:4552928 chr16:4552920 . . 0 13 hm5C_associated_SNPs_11478 0 0 0 0 1 HMOX2 chr16:4552960 5'GT 4552960 Upstream 41bp
chr16 4552920 4552920 1 + C A rs551921972 4552931 + 4552911 4552951 41 AGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTG AGGTTCAAGAGATTCTCCTGCCTCAGCCTCCTGAGTAGCTG < 41bp 1 0.255056872236016 1 0.0399261713027954 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMOX2 ENSG00000103415 UTR5 Human protein_coding chr16:4552931 chr16:4552920 . . 0 10 hm5C_associated_SNPs_11479 0 0 0 0 1 HMOX2 chr16:4552960 5'GT 4552960 Upstream 41bp
chr16 4902939 4902939 1 + C G rs144891449 4902930 + 4902910 4902950 41 TTGGTAGCCATGTCGGAGCCCCACAGGGTCCAGTTCACCTC TTGGTAGCCATGTCGGAGCCCCACAGGGTGCAGTTCACCTC < 41bp 1 0.348096002386722 1 0.187075585126877 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN1 ENSG00000118900 CDS Human protein_coding chr16:4902930 chr16:4902939 synonymous SNV . 0 30 hm5C_associated_SNPs_11481 0 0 1 0 1 UBN1 chr16:4902880 3'AG 4902880 Downstream 60bp
chr16 5123251 5123251 1 + T C rs140626461 5123234 + 5123214 5123254 41 GGAAGTTGATGTGGAGGGAGCCAGGTGCCTATATCTTTCTC GGAAGTTGATGTGGAGGGAGCCAGGTGCCTATATCTTCCTC < 41bp 1 0.427709031557209 1 0.659464955329895 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5123234 chr16:5123251 synonymous SNV . 0 38 hm5C_associated_SNPs_11482 0 0 1 0 2 ALG1 chr16:5123154 3'AG 5123154 Downstream 98bp
chr16 5123251 5123251 1 + T C rs140626461 5123234 + 5123214 5123254 41 GGAAGTTGATGTGGAGGGAGCCAGGTGCCTATATCTTTCTC GGAAGTTGATGTGGAGGGAGCCAGGTGCCTATATCTTCCTC < 41bp 1 0.427709031557209 1 0.659464955329895 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5123234 chr16:5123251 synonymous SNV . 0 38 hm5C_associated_SNPs_11482 0 0 1 0 2 ALG1 chr16:5123257 5'GT 5123257 Upstream 7bp
chr16 11133681 11133681 1 + C T rs61740118 11133688 + 11133668 11133708 41 AGACCACCTACAACCACCCGCTAGCTGAAAGACTCATCAGG AGACCACCTACAATCACCCGCTAGCTGAAAGACTCATCAGG < 41bp 1 0.106267467402251 1 0.16377854347229 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11133688 chr16:11133681 synonymous SNV . 0 14 hm5C_associated_SNPs_11486 0 0 1 0 2 CLEC16A chr16:11133611 3'AG 11133611 Downstream 71bp
chr16 11133681 11133681 1 + C T rs61740118 11133688 + 11133668 11133708 41 AGACCACCTACAACCACCCGCTAGCTGAAAGACTCATCAGG AGACCACCTACAATCACCCGCTAGCTGAAAGACTCATCAGG < 41bp 1 0.106267467402251 1 0.16377854347229 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11133688 chr16:11133681 synonymous SNV . 0 14 hm5C_associated_SNPs_11486 0 0 1 0 2 CLEC16A chr16:11133733 5'GT 11133733 Upstream 53bp
chr16 12662420 12662420 1 + C A rs2288423 12662431 + 12662411 12662451 41 TTCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGA TTCCCGCTTACCCAAACTGTCCCGGGGTCAGCCCCGGGAGA < 41bp 1 0.299233359054588 1 0.41114616394043 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662431 chr16:12662420 nonsynonymous SNV 0.992 2 10 hm5C_associated_SNPs_11490 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 58bp
chr16 12662420 12662420 1 + C A rs2288423 12662432 + 12662412 12662452 41 TCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGAC TCCCGCTTACCCAAACTGTCCCGGGGTCAGCCCCGGGAGAC < 41bp 1 0.34862969434301 1 0.405083924531937 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662432 chr16:12662420 nonsynonymous SNV 0.992 2 9 hm5C_associated_SNPs_11491 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 58bp
chr16 12662420 12662420 1 + C A rs2288423 12662433 + 12662413 12662453 41 CCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGACC CCCGCTTACCCAAACTGTCCCGGGGTCAGCCCCGGGAGACC < 41bp 1 0.472011982389656 1 0.889782607555389 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662433 chr16:12662420 nonsynonymous SNV 0.992 2 8 hm5C_associated_SNPs_11492 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 58bp
chr16 12662448 12662448 1 + G A rs143372184 12662431 + 12662411 12662451 41 TTCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGA TTCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGAAGA < 41bp 1 0.331272264919906 1 0.544626235961914 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662431 chr16:12662448 nonsynonymous SNV 0.394 2 38 hm5C_associated_SNPs_11493 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 86bp
chr16 12662448 12662448 1 + G A rs143372184 12662432 + 12662412 12662452 41 TCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGAC TCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGAAGAC < 41bp 1 0.329551254655866 1 0.710704147815704 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662432 chr16:12662448 nonsynonymous SNV 0.394 2 37 hm5C_associated_SNPs_11494 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 86bp
chr16 12662448 12662448 1 + G A rs143372184 12662433 + 12662413 12662453 41 CCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGACC CCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGAAGACC < 41bp 1 0.415228925151851 1 0.886863946914673 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662433 chr16:12662448 nonsynonymous SNV 0.394 2 36 hm5C_associated_SNPs_11495 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 86bp
chr16 12662448 12662448 1 + G A rs143372184 12662443 + 12662423 12662463 41 CAAACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAACGTGG CAAACTGTCCCGGGGTCAGCCCCGGAAGACCCGCAACGTGG < 41bp 1 0.297931071367424 1 0.503393888473511 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662443 chr16:12662448 nonsynonymous SNV 0.394 2 26 hm5C_associated_SNPs_11496 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 86bp
chr16 12662448 12662448 1 + G A rs143372184 12662444 + 12662424 12662464 41 AAACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAACGTGGA AAACTGTCCCGGGGTCAGCCCCGGAAGACCCGCAACGTGGA < 41bp 1 0.291904431921449 1 0.827396035194397 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662444 chr16:12662448 nonsynonymous SNV 0.394 2 25 hm5C_associated_SNPs_11497 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 86bp
chr16 12662448 12662448 1 + G A rs143372184 12662445 + 12662425 12662465 41 AACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAACGTGGAG AACTGTCCCGGGGTCAGCCCCGGAAGACCCGCAACGTGGAG < 41bp 1 0.476134817407285 1 0.744466543197632 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662445 chr16:12662448 nonsynonymous SNV 0.394 2 24 hm5C_associated_SNPs_11498 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 86bp
chr16 14038659 14038659 1 + T C rs2020955 14038675 + 14038655 14038695 41 AGCATCTGCAGATGTTTCCACTGACACTCGGAAAGCCGGTG AGCACCTGCAGATGTTTCCACTGACACTCGGAAAGCCGGTG < 41bp 1 0.239393174512181 1 0.146419376134872 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ERCC4 ENSG00000175595 CDS Human protein_coding chr16:14038675 chr16:14038659 nonsynonymous SNV 0.001 0 5 hm5C_associated_SNPs_11499 5 0 0 0 2 ERCC4 chr16:14038580 3'AG 14038580 Downstream 80bp
chr16 14038659 14038659 1 + T C rs2020955 14038675 + 14038655 14038695 41 AGCATCTGCAGATGTTTCCACTGACACTCGGAAAGCCGGTG AGCACCTGCAGATGTTTCCACTGACACTCGGAAAGCCGGTG < 41bp 1 0.239393174512181 1 0.146419376134872 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ERCC4 ENSG00000175595 CDS Human protein_coding chr16:14038675 chr16:14038659 nonsynonymous SNV 0.001 0 5 hm5C_associated_SNPs_11499 5 0 0 0 2 ERCC4 chr16:14038692 5'GT 14038692 Upstream 34bp
chr16 14726833 14726833 1 + G A rs563033863 14726831 + 14726811 14726851 41 TTCCTCTGCTCCCGCGGGGTCTGTGCTGAGAATAATGGCCC TTCCTCTGCTCCCGCGGGGTCTATGCTGAGAATAATGGCCC < 41bp 1 0.390537921440855 1 0.147723942995071 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BFAR ENSG00000103429 UTR5 Human protein_coding chr16:14726831 chr16:14726833 . . 0 23 hm5C_associated_SNPs_11504 0 0 1 0 1 BFAR chr16:14726875 5'GT 14726875 Upstream 43bp
chr16 14972674 14972674 1 + C T rs541333077 14972678 + 14972658 14972698 41 CCAGGACAACGGCATTCTGACATTCTCAAACCTGGTAACGT CCAGGACAACGGCATTTTGACATTCTCAAACCTGGTAACGT < 41bp 1 0.0615791985877657 1 0.0137066543102264 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972678 chr16:14972674 synonymous SNV . 0 17 hm5C_associated_SNPs_11505 0 0 0 0 2 NOMO1 chr16:14972578 3'AG 14972578 Downstream 97bp
chr16 14972674 14972674 1 + C T rs541333077 14972678 + 14972658 14972698 41 CCAGGACAACGGCATTCTGACATTCTCAAACCTGGTAACGT CCAGGACAACGGCATTTTGACATTCTCAAACCTGGTAACGT < 41bp 1 0.0615791985877657 1 0.0137066543102264 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972678 chr16:14972674 synonymous SNV . 0 17 hm5C_associated_SNPs_11505 0 0 0 0 2 NOMO1 chr16:14972691 5'GT 14972691 Upstream 18bp
chr16 14972674 14972674 1 + C T rs541333077 14972682 + 14972662 14972702 41 GACAACGGCATTCTGACATTCTCAAACCTGGTAACGTGTTC GACAACGGCATTTTGACATTCTCAAACCTGGTAACGTGTTC < 41bp 1 0.569566642033296 1 0.866151809692383 experiment 0.860866715933407 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972682 chr16:14972674 synonymous SNV . 0 13 hm5C_associated_SNPs_11506 0 0 0 0 2 NOMO1 chr16:14972578 3'AG 14972578 Downstream 97bp
chr16 14972674 14972674 1 + C T rs541333077 14972682 + 14972662 14972702 41 GACAACGGCATTCTGACATTCTCAAACCTGGTAACGTGTTC GACAACGGCATTTTGACATTCTCAAACCTGGTAACGTGTTC < 41bp 1 0.569566642033296 1 0.866151809692383 experiment 0.860866715933407 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972682 chr16:14972674 synonymous SNV . 0 13 hm5C_associated_SNPs_11506 0 0 0 0 2 NOMO1 chr16:14972691 5'GT 14972691 Upstream 18bp
chr16 15788041 15788041 1 + G T rs570994490 15788047 + 15788027 15788067 41 GACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCG GACGACTCCACCGGTGGGACCCCCCTCACACCTGCGGCCCG < 41bp 1 0.182133652490339 1 0.0634188055992126 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDE1 ENSG00000072864 CDS Human protein_coding chr16:15788047 chr16:15788041 synonymous SNV . 0 15 hm5C_associated_SNPs_11508 1 0 1 0 2 NDE1 chr16:15788022 3'AG 15788022 Downstream 20bp
chr16 15788041 15788041 1 + G T rs570994490 15788047 + 15788027 15788067 41 GACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCG GACGACTCCACCGGTGGGACCCCCCTCACACCTGCGGCCCG < 41bp 1 0.182133652490339 1 0.0634188055992126 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDE1 ENSG00000072864 CDS Human protein_coding chr16:15788047 chr16:15788041 synonymous SNV . 0 15 hm5C_associated_SNPs_11508 1 0 1 0 2 NDE1 chr16:15788113 5'GT 15788113 Upstream 73bp
chr16 15788062 15788062 1 + G A rs1123418 15788047 + 15788027 15788067 41 GACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCG GACGACTCCACCGGGGGGACCCCCCTCACACCTGCAGCCCG < 41bp 1 0.170271322158392 1 0.103989154100418 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDE1 ENSG00000072864 CDS Human protein_coding chr16:15788047 chr16:15788062 synonymous SNV . 0 36 hm5C_associated_SNPs_11509 2 0 1 0 2 NDE1 chr16:15788022 3'AG 15788022 Downstream 41bp
chr16 15788062 15788062 1 + G A rs1123418 15788047 + 15788027 15788067 41 GACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCG GACGACTCCACCGGGGGGACCCCCCTCACACCTGCAGCCCG < 41bp 1 0.170271322158392 1 0.103989154100418 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDE1 ENSG00000072864 CDS Human protein_coding chr16:15788047 chr16:15788062 synonymous SNV . 0 36 hm5C_associated_SNPs_11509 2 0 1 0 2 NDE1 chr16:15788113 5'GT 15788113 Upstream 52bp
chr16 16101842 16101842 1 + C T rs41494447 16101834 + 16101814 16101854 41 TACATTCAGATGACACCTCTCAACAAAACCAAAACTGTAAG TACATTCAGATGACACCTCTCAACAAAATCAAAACTGTAAG < 41bp 1 0.456091323879215 1 0.453556925058365 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16101834 chr16:16101842 nonsynonymous SNV 0.996 0 29 hm5C_associated_SNPs_11512 0 0 1 0 1 ABCC1 chr16:16101849 5'GT 16101849 Upstream 8bp
chr16 16465466 16465466 1 + C G rs557228510 16465451 + 16465431 16465471 41 GCCTCCGTCGGTGCTGTGGTCACCCTGGACAGCAGCAACCC GCCTCCGTCGGTGCTGTGGTCACCCTGGACAGCAGGAACCC < 41bp 1 0.469467919633011 1 0.0691286027431488 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PKD1P4-NPIPA8 ENSG00000227827 ncRNA_exonic Human unprocessed_pseudogene chr16:16465451 chr16:16465466 . . 0 36 hm5C_associated_SNPs_11518 0 0 1 0 1 PKD1P4-NPIPA8 chr16:16465515 5'GT 16465515 Upstream 50bp
chr16 19460888 19460888 1 + G A rs16972013 19460903 + 19460883 19460923 41 TGAAAGTGGTCCTGTCCATGCTTATGGAAACCCACCATTGT TGAAAATGGTCCTGTCCATGCTTATGGAAACCCACCATTGT < 41bp 1 0.13601398022538 1 0.0959940254688263 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMC5 ENSG00000103534 CDS Human protein_coding chr16:19460903 chr16:19460888 nonsynonymous SNV 0.005 0 6 hm5C_associated_SNPs_11529 0 0 1 0 2 TMC5 chr16:19460864 3'AG 19460864 Downstream 25bp
chr16 19460888 19460888 1 + G A rs16972013 19460903 + 19460883 19460923 41 TGAAAGTGGTCCTGTCCATGCTTATGGAAACCCACCATTGT TGAAAATGGTCCTGTCCATGCTTATGGAAACCCACCATTGT < 41bp 1 0.13601398022538 1 0.0959940254688263 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMC5 ENSG00000103534 CDS Human protein_coding chr16:19460903 chr16:19460888 nonsynonymous SNV 0.005 0 6 hm5C_associated_SNPs_11529 0 0 1 0 2 TMC5 chr16:19460953 5'GT 19460953 Upstream 66bp
chr16 20926975 20926975 1 + C T rs531105424 20926976 + 20926956 20926996 41 TCAGGGCAGATGGAAGACACCATCAAAGAAAAACAGTACAT TCAGGGCAGATGGAAGACATCATCAAAGAAAAACAGTACAT < 41bp 1 0.741087620033858 1 0.168603122234344 experiment 0.517824759932284 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LYRM1 ENSG00000102897 CDS Human protein_coding chr16:20926976 chr16:20926975 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_11530 0 0 1 0 2 LYRM1 chr16:20926878 3'AG 20926878 Downstream 98bp
chr16 20926975 20926975 1 + C T rs531105424 20926976 + 20926956 20926996 41 TCAGGGCAGATGGAAGACACCATCAAAGAAAAACAGTACAT TCAGGGCAGATGGAAGACATCATCAAAGAAAAACAGTACAT < 41bp 1 0.741087620033858 1 0.168603122234344 experiment 0.517824759932284 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LYRM1 ENSG00000102897 CDS Human protein_coding chr16:20926976 chr16:20926975 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_11530 0 0 1 0 2 LYRM1 chr16:20927036 5'GT 20927036 Upstream 62bp
chr16 22019653 22019653 1 + C A rs368259073 22019663 + 22019643 22019683 41 CTCAGGATGTCTCTTTCTGGCCGCCGATATCTTCGCCATCG CTCAGGATGTATCTTTCTGGCCGCCGATATCTTCGCCATCG < 41bp 1 0.485841921492373 1 0.0513626337051392 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C16orf52 ENSG00000185716 CDS Human protein_coding chr16:22019663 chr16:22019653 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_11531 0 0 1 0 1 C16orf52 chr16:22019728 5'GT 22019728 Upstream 76bp
chr16 22328486 22328486 1 + C T rs143440180 22328499 + 22328479 22328519 41 CTGCGCACGCTGCCCCTGGCCGATCAGATCAAGATCCTGAT CTGCGCATGCTGCCCCTGGCCGATCAGATCAAGATCCTGAT < 41bp 1 0.214542957172554 1 0.220988094806671 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22328499 chr16:22328486 nonsynonymous SNV 0.869 4 8 hm5C_associated_SNPs_11535 0 0 1 0 2 POLR3E chr16:22328436 3'AG 22328436 Downstream 51bp
chr16 22328486 22328486 1 + C T rs143440180 22328499 + 22328479 22328519 41 CTGCGCACGCTGCCCCTGGCCGATCAGATCAAGATCCTGAT CTGCGCATGCTGCCCCTGGCCGATCAGATCAAGATCCTGAT < 41bp 1 0.214542957172554 1 0.220988094806671 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22328499 chr16:22328486 nonsynonymous SNV 0.869 4 8 hm5C_associated_SNPs_11535 0 0 1 0 2 POLR3E chr16:22328527 5'GT 22328527 Upstream 42bp
chr16 22448380 22448380 1 - T G rs373906442 22448367 - 22448347 22448387 41 GCTCACAAGGCCACTGCTAACCCGCCTCCCGGCTCCGCTGG GCTCACACGGCCACTGCTAACCCGCCTCCCGGCTCCGCTGG < 41bp 1 0.61817155522627 1 0.562423884868622 experiment 0.76365688954746 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RRN3P3;SMG1P1 ENSG00000237296;ENSG00000257122 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:22448367 chr16:22448380 . . 0 8 hm5C_associated_SNPs_11536 0 0 0 0 1 RRN3P3 chr16:22448326 5'GT 22448326 Upstream 55bp
chr16 27325264 27325264 1 + G C rs35583025 27325251 + 27325231 27325271 41 GGTCTCCGCGCCCAGGAAAGCCCCGCGCGGCGCGGGCCAGG GGTCTCCGCGCCCAGGAAAGCCCCGCGCGGCGCCGGCCAGG < 41bp 1 0.679950925340196 1 0.22250360250473 experiment 0.640098149319608 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IL4R ENSG00000077238 UTR5 Human protein_coding chr16:27325251 chr16:27325264 . . 0 34 hm5C_associated_SNPs_11539 0 0 1 0 1 IL4R chr16:27325341 5'GT 27325341 Upstream 78bp
chr16 27325264 27325264 1 + G C rs35583025 27325252 + 27325232 27325272 41 GTCTCCGCGCCCAGGAAAGCCCCGCGCGGCGCGGGCCAGGG GTCTCCGCGCCCAGGAAAGCCCCGCGCGGCGCCGGCCAGGG < 41bp 1 0.536450409925766 1 0.173686474561691 experiment 0.927099180148469 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IL4R ENSG00000077238 UTR5 Human protein_coding chr16:27325252 chr16:27325264 . . 0 33 hm5C_associated_SNPs_11540 0 0 1 0 1 IL4R chr16:27325341 5'GT 27325341 Upstream 78bp
chr16 27325264 27325264 1 + G C rs35583025 27325253 + 27325233 27325273 41 TCTCCGCGCCCAGGAAAGCCCCGCGCGGCGCGGGCCAGGGA TCTCCGCGCCCAGGAAAGCCCCGCGCGGCGCCGGCCAGGGA < 41bp 1 0.7323753540828 1 0.406201720237732 experiment 0.5352492918344 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IL4R ENSG00000077238 UTR5 Human protein_coding chr16:27325253 chr16:27325264 . . 0 32 hm5C_associated_SNPs_11541 0 0 1 0 1 IL4R chr16:27325341 5'GT 27325341 Upstream 78bp
chr16 27325264 27325264 1 + G C rs35583025 27325254 + 27325234 27325274 41 CTCCGCGCCCAGGAAAGCCCCGCGCGGCGCGGGCCAGGGAA CTCCGCGCCCAGGAAAGCCCCGCGCGGCGCCGGCCAGGGAA < 41bp 1 0.738155491261141 1 0.455058127641678 experiment 0.523689017477718 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IL4R ENSG00000077238 UTR5 Human protein_coding chr16:27325254 chr16:27325264 . . 0 31 hm5C_associated_SNPs_11542 0 0 1 0 1 IL4R chr16:27325341 5'GT 27325341 Upstream 78bp
chr16 27325264 27325264 1 + G C rs35583025 27325256 + 27325236 27325276 41 CCGCGCCCAGGAAAGCCCCGCGCGGCGCGGGCCAGGGAAGG CCGCGCCCAGGAAAGCCCCGCGCGGCGCCGGCCAGGGAAGG < 41bp 1 0.708991000455412 1 0.637053191661835 experiment 0.582017999089176 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IL4R ENSG00000077238 UTR5 Human protein_coding chr16:27325256 chr16:27325264 . . 0 29 hm5C_associated_SNPs_11543 0 0 1 0 1 IL4R chr16:27325341 5'GT 27325341 Upstream 78bp
chr16 28845909 28845909 1 + G A rs142624994 28845926 + 28845906 28845946 41 CCCGCCTCTGGTGGCTGCCACGCCCTATTCTTCCTACATCC CCCACCTCTGGTGGCTGCCACGCCCTATTCTTCCTACATCC < 41bp 1 0.424015906342943 1 0.864451289176941 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28845926 chr16:28845909 synonymous SNV . 0 4 hm5C_associated_SNPs_11590 0 0 1 0 1 ATXN2L chr16:28845827 3'AG 28845827 Downstream 83bp
chr16 28847772 28847772 1 + C G rs201701678 28847774 + 28847754 28847794 41 CCCACTGCCTCCCCAGCTCTCAGTGACCCCGACTGTCTCCT CCCACTGCCTCCCCAGCTGTCAGTGACCCCGACTGTCTCCT < 41bp 1 0.561029405076436 1 0.728786587715149 experiment 0.877941189847127 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ATXN2L ENSG00000168488 CDS Human antisense chr16:28847774 chr16:28847772 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_11591 0 0 1 0 1 ATXN2L chr16:28847811 5'GT 28847811 Upstream 40bp
chr16 28970053 28970053 1 + A T rs536656003 28970039 + 28970019 28970059 41 TTGTTGTCCCCATCCCTAGTCGGAGCCCCTGCAGAGTGTGG TTGTTGTCCCCATCCCTAGTCGGAGCCCCTGCAGTGTGTGG < 41bp 1 0.555847902171561 1 0.898181438446045 experiment 0.888304195656878 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28970039 chr16:28970053 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_11594 0 0 1 0 1 NFATC2IP chr16:28970038 3'AG 28970038 Downstream 16bp
chr16 28970122 28970122 1 + A T rs201303990 28970135 + 28970115 28970155 41 TGGAGAGACAGAGCTATCACCTACTGCCACTCCCAGGACCC TGGAGAGTCAGAGCTATCACCTACTGCCACTCCCAGGACCC < 41bp 1 0.516795739937645 1 0.0385141372680664 experiment 0.966408520124709 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28970135 chr16:28970122 nonsynonymous SNV 0.996 0 8 hm5C_associated_SNPs_11595 0 0 1 0 2 NFATC2IP chr16:28970038 3'AG 28970038 Downstream 85bp
chr16 28970122 28970122 1 + A T rs201303990 28970135 + 28970115 28970155 41 TGGAGAGACAGAGCTATCACCTACTGCCACTCCCAGGACCC TGGAGAGTCAGAGCTATCACCTACTGCCACTCCCAGGACCC < 41bp 1 0.516795739937645 1 0.0385141372680664 experiment 0.966408520124709 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28970135 chr16:28970122 nonsynonymous SNV 0.996 0 8 hm5C_associated_SNPs_11595 0 0 1 0 2 NFATC2IP chr16:28970182 5'GT 28970182 Upstream 61bp
chr16 29706442 29706442 1 + C T rs200392225 29706444 + 29706424 29706464 41 GCTCCTGGTGGGCGGGGCCGCCTCGCACCGCTACGACCTGG GCTCCTGGTGGGCGGGGCTGCCTCGCACCGCTACGACCTGG < 41bp 1 0.239839166229522 1 0.0902343094348907 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29706444 chr16:29706442 synonymous SNV . 0 19 hm5C_associated_SNPs_11597 0 0 1 0 1 QPRT chr16:29706520 5'GT 29706520 Upstream 79bp
chr16 29706442 29706442 1 + C T rs200392225 29706451 + 29706431 29706471 41 GTGGGCGGGGCCGCCTCGCACCGCTACGACCTGGGAGGGCT GTGGGCGGGGCTGCCTCGCACCGCTACGACCTGGGAGGGCT < 41bp 1 0.392562515359222 1 0.12350133061409 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29706451 chr16:29706442 synonymous SNV . 0 12 hm5C_associated_SNPs_11598 0 0 1 0 1 QPRT chr16:29706520 5'GT 29706520 Upstream 79bp
chr16 29706444 29706444 1 + C T rs2303255 29706442 + 29706422 29706462 41 GGGCTCCTGGTGGGCGGGGCCGCCTCGCACCGCTACGACCT GGGCTCCTGGTGGGCGGGGCCGTCTCGCACCGCTACGACCT < 41bp 1 0.262940996829933 1 0.199633538722992 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29706442 chr16:29706444 nonsynonymous SNV 0.221 1 23 hm5C_associated_SNPs_11599 0 0 1 0 1 QPRT chr16:29706520 5'GT 29706520 Upstream 77bp
chr16 29706444 29706444 1 + C T rs2303255 29706451 + 29706431 29706471 41 GTGGGCGGGGCCGCCTCGCACCGCTACGACCTGGGAGGGCT GTGGGCGGGGCCGTCTCGCACCGCTACGACCTGGGAGGGCT < 41bp 1 0.430057303850431 1 0.106390804052353 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29706451 chr16:29706444 nonsynonymous SNV 0.221 1 14 hm5C_associated_SNPs_11600 0 0 1 0 1 QPRT chr16:29706520 5'GT 29706520 Upstream 77bp
chr16 29708350 29708350 1 + A G rs9932770 29708330 + 29708310 29708350 41 CCAGCAGGCGGTGCGGGCGGCCAGACAGGCGGCTGACTTCA CCAGCAGGCGGTGCGGGCGGCCAGACAGGCGGCTGACTTCG < 41bp 1 0.485722947965964 1 0.269349038600922 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29708330 chr16:29708350 nonsynonymous SNV 0.004 0 41 hm5C_associated_SNPs_11601 0 0 1 0 2 QPRT chr16:29708317 3'AG 29708317 Downstream 34bp
chr16 29708350 29708350 1 + A G rs9932770 29708330 + 29708310 29708350 41 CCAGCAGGCGGTGCGGGCGGCCAGACAGGCGGCTGACTTCA CCAGCAGGCGGTGCGGGCGGCCAGACAGGCGGCTGACTTCG < 41bp 1 0.485722947965964 1 0.269349038600922 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29708330 chr16:29708350 nonsynonymous SNV 0.004 0 41 hm5C_associated_SNPs_11601 0 0 1 0 2 QPRT chr16:29708448 5'GT 29708448 Upstream 99bp
chr16 29810471 29810471 1 + G A rs550717370 29810478 + 29810458 29810498 41 CGGCTCAACCAGCGCTCCTCCCGCAGTCATGCTGTGCTCCT CGGCTCAACCAGCACTCCTCCCGCAGTCATGCTGTGCTCCT < 41bp 1 0.581314165315232 1 0.169766873121262 experiment 0.837371669369536 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29810478 chr16:29810471 nonsynonymous SNV 1.000 0 14 hm5C_associated_SNPs_11602 0 0 1 0 1 KIF22 chr16:29810505 5'GT 29810505 Upstream 35bp
chr16 29810471 29810471 1 + G A rs550717370 29810479 + 29810459 29810499 41 GGCTCAACCAGCGCTCCTCCCGCAGTCATGCTGTGCTCCTG GGCTCAACCAGCACTCCTCCCGCAGTCATGCTGTGCTCCTG < 41bp 1 0.701378985794274 1 0.345238983631134 experiment 0.597242028411452 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29810479 chr16:29810471 nonsynonymous SNV 1.000 0 13 hm5C_associated_SNPs_11603 0 0 1 0 1 KIF22 chr16:29810505 5'GT 29810505 Upstream 35bp
chr16 29994922 29994922 1 + C T rs3814883 29994940 + 29994920 29994960 41 TCCGCCCGCCGCCGGGCCTACTGCCGTAACCGAGACCACTT TCTGCCCGCCGCCGGGCCTACTGCCGTAACCGAGACCACTT < 41bp 1 0.628882505140034 1 0.0797471702098846 experiment 0.742234989719933 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994940 chr16:29994922 synonymous SNV . 0 3 hm5C_associated_SNPs_11616 0 1 1 0 2 TAOK2 chr16:29994824 3'AG 29994824 Downstream 99bp
chr16 29994922 29994922 1 + C T rs3814883 29994940 + 29994920 29994960 41 TCCGCCCGCCGCCGGGCCTACTGCCGTAACCGAGACCACTT TCTGCCCGCCGCCGGGCCTACTGCCGTAACCGAGACCACTT < 41bp 1 0.628882505140034 1 0.0797471702098846 experiment 0.742234989719933 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994940 chr16:29994922 synonymous SNV . 0 3 hm5C_associated_SNPs_11616 0 1 1 0 2 TAOK2 chr16:29994985 5'GT 29994985 Upstream 64bp
chr16 30998266 30998266 1 + G A rs143434186 30998260 + 30998240 30998280 41 ACTTCTACCGCCAGGGCCTGCGCCTGGGAGGTTGGCTCTTC ACTTCTACCGCCAGGGCCTGCGCCTGAGAGGTTGGCTCTTC < 41bp 1 0.647209800427732 1 0.20272421836853 experiment 0.705580399144537 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSD3B7 ENSG00000099377 CDS Human protein_coding chr16:30998260 chr16:30998266 nonsynonymous SNV 0.582 3 27 hm5C_associated_SNPs_11631 1 0 0 0 1 HSD3B7 chr16:30998323 5'GT 30998323 Upstream 58bp
chr16 31191482 31191482 1 + A G rs929867 31191478 + 31191458 31191498 41 CTGCTCAGTCCTCCAGGCGTCGGTACTCAGCGGTGTTGGAA CTGCTCAGTCCTCCAGGCGTCGGTGCTCAGCGGTGTTGGAA < 41bp 1 0.460606531178612 1 0.399450600147247 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FUS ENSG00000089280 UTR5 Human protein_coding chr16:31191478 chr16:31191482 . . 0 25 hm5C_associated_SNPs_11638 1 0 1 0 1 FUS chr16:31191548 5'GT 31191548 Upstream 67bp
chr16 31191482 31191482 1 + A G rs929867 31191483 + 31191463 31191503 41 CAGTCCTCCAGGCGTCGGTACTCAGCGGTGTTGGAACTTCG CAGTCCTCCAGGCGTCGGTGCTCAGCGGTGTTGGAACTTCG < 41bp 1 0.329508905183148 1 0.174594640731812 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FUS ENSG00000089280 UTR5 Human protein_coding chr16:31191483 chr16:31191482 . . 0 20 hm5C_associated_SNPs_11639 1 0 1 0 1 FUS chr16:31191548 5'GT 31191548 Upstream 67bp
chr16 31191489 31191489 1 + G A rs72550864 31191478 + 31191458 31191498 41 CTGCTCAGTCCTCCAGGCGTCGGTACTCAGCGGTGTTGGAA CTGCTCAGTCCTCCAGGCGTCGGTACTCAGCAGTGTTGGAA < 41bp 1 0.549781715972129 1 0.380760610103607 experiment 0.900436568055742 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FUS ENSG00000089280 UTR5 Human protein_coding chr16:31191478 chr16:31191489 . . 0 32 hm5C_associated_SNPs_11640 0 0 1 0 1 FUS chr16:31191548 5'GT 31191548 Upstream 60bp
chr16 31191489 31191489 1 + G A rs72550864 31191483 + 31191463 31191503 41 CAGTCCTCCAGGCGTCGGTACTCAGCGGTGTTGGAACTTCG CAGTCCTCCAGGCGTCGGTACTCAGCAGTGTTGGAACTTCG < 41bp 1 0.329485902846685 1 0.208639770746231 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FUS ENSG00000089280 UTR5 Human protein_coding chr16:31191483 chr16:31191489 . . 0 27 hm5C_associated_SNPs_11641 0 0 1 0 1 FUS chr16:31191548 5'GT 31191548 Upstream 60bp
chr16 31191497 31191497 1 + A G rs67676356 31191478 + 31191458 31191498 41 CTGCTCAGTCCTCCAGGCGTCGGTACTCAGCGGTGTTGGAA CTGCTCAGTCCTCCAGGCGTCGGTACTCAGCGGTGTTGGGA < 41bp 1 0.53624462149498 1 0.437256783246994 experiment 0.927510757010039 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FUS ENSG00000089280 UTR5 Human protein_coding chr16:31191478 chr16:31191497 . . 0 40 hm5C_associated_SNPs_11642 1 0 1 0 1 FUS chr16:31191548 5'GT 31191548 Upstream 52bp
chr16 31191497 31191497 1 + A G rs67676356 31191483 + 31191463 31191503 41 CAGTCCTCCAGGCGTCGGTACTCAGCGGTGTTGGAACTTCG CAGTCCTCCAGGCGTCGGTACTCAGCGGTGTTGGGACTTCG < 41bp 1 0.34676884714378 1 0.391447156667709 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FUS ENSG00000089280 UTR5 Human protein_coding chr16:31191483 chr16:31191497 . . 0 35 hm5C_associated_SNPs_11643 1 0 1 0 1 FUS chr16:31191548 5'GT 31191548 Upstream 52bp
chr16 31235548 31235548 1 + G C rs58585879 31235556 + 31235536 31235576 41 GCACCCGAGCCTGGTGGTGTCTTCCTCTGGCCGCCGCGTGG GCACCCGAGCCTCGTGGTGTCTTCCTCTGGCCGCCGCGTGG < 41bp 1 0.23917969825173 1 0.058073878288269 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31235556 chr16:31235548 synonymous SNV . 0 13 hm5C_associated_SNPs_11648 0 0 1 0 1 TRIM72 chr16:31235502 3'AG 31235502 Downstream 47bp
chr16 31473275 31473275 1 + A G rs35923277 31473271 + 31473251 31473291 41 CTTCAGTGCATGAAGACAGACAGCATCCAGAACCGAACGGC CTTCAGTGCATGAAGACAGACAGCGTCCAGAACCGAACGGC < 41bp 1 0.546172006295583 1 0.692781388759613 experiment 0.907655987408835 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARMC5 ENSG00000140691 CDS Human protein_coding chr16:31473271 chr16:31473275 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_11650 0 0 1 0 2 ARMC5 chr16:31473243 3'AG 31473243 Downstream 33bp
chr16 31473275 31473275 1 + A G rs35923277 31473271 + 31473251 31473291 41 CTTCAGTGCATGAAGACAGACAGCATCCAGAACCGAACGGC CTTCAGTGCATGAAGACAGACAGCGTCCAGAACCGAACGGC < 41bp 1 0.546172006295583 1 0.692781388759613 experiment 0.907655987408835 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARMC5 ENSG00000140691 CDS Human protein_coding chr16:31473271 chr16:31473275 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_11650 0 0 1 0 2 ARMC5 chr16:31473350 5'GT 31473350 Upstream 76bp
chr16 46723598 46723598 1 + T C rs33994299 46723587 + 46723567 46723607 41 TTTCGTTGACCCGCGGCGTTCACGGGAATTGTTCGCTTTAG TTTCGTTGACCCGCGGCGTTCACGGGAATTGCTCGCTTTAG < 41bp 1 0.798776751302543 1 0.682891964912415 experiment 0.402446497394913 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ORC6 ENSG00000091651 UTR5 Human protein_coding chr16:46723587 chr16:46723598 . . 0 32 hm5C_associated_SNPs_11651 3 0 1 0 1 ORC6 chr16:46723682 5'GT 46723682 Upstream 85bp
chr16 50261755 50261755 1 + C T rs75174826 50261765 + 50261745 50261785 41 GTTAGGATTCCGATGCAACACCATGCAAAACCCCGAAACAG GTTAGGATTCTGATGCAACACCATGCAAAACCCCGAAACAG < 41bp 1 0.256541017553815 1 0.64474630355835 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAPD5 ENSG00000121274 CDS Human protein_coding chr16:50261765 chr16:50261755 synonymous SNV . 0 11 hm5C_associated_SNPs_11671 0 0 1 1 1 PAPD5 chr16:50261750 3'AG 50261750 Downstream 6bp
chr16 50813910 50813910 1 + C T rs75757530 50813901 + 50813881 50813921 41 CCTCCTTTCTATGGGGTAATCCGTTGGATCGGTCAGCCACC CCTCCTTTCTATGGGGTAATCCGTTGGATTGGTCAGCCACC < 41bp 1 0.274417086084876 1 0.170062482357025 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CYLD ENSG00000083799 CDS Human protein_coding chr16:50813901 chr16:50813910 synonymous SNV . 0 30 hm5C_associated_SNPs_11673 3 0 0 0 1 CYLD chr16:50813955 5'GT 50813955 Upstream 46bp
chr16 53468630 53468630 1 + C A rs79388287 53468610 + 53468590 53468630 41 CCACCCCTCAGATCCAGCAGCGGTTCGACGAGCTGTGCAGC CCACCCCTCAGATCCAGCAGCGGTTCGACGAGCTGTGCAGA < 41bp 1 0.301970207320388 1 0.351580858230591 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBL2 ENSG00000103479 CDS Human protein_coding chr16:53468610 chr16:53468630 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_11674 0 0 1 0 1 RBL2 chr16:53468708 5'GT 53468708 Upstream 79bp
chr16 53738094 53738094 1 + A G rs199561185 53738107 + 53738087 53738127 41 TAGTGGCAGCATGAAGCGCACCCCGACTGCCGAGGAACGAG TAGTGGCGGCATGAAGCGCACCCCGACTGCCGAGGAACGAG < 41bp 1 0.376841820288506 1 0.33907675743103 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FTO ENSG00000140718 UTR5 Human protein_coding chr16:53738107 chr16:53738094 . . 0 8 hm5C_associated_SNPs_11675 0 0 1 0 1 FTO chr16:53738141 5'GT 53738141 Upstream 48bp
chr16 53738114 53738114 1 + T C rs73609956 53738107 + 53738087 53738127 41 TAGTGGCAGCATGAAGCGCACCCCGACTGCCGAGGAACGAG TAGTGGCAGCATGAAGCGCACCCCGACCGCCGAGGAACGAG < 41bp 1 0.379662520612815 1 0.386025726795197 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FTO ENSG00000140718 CDS Human protein_coding chr16:53738107 chr16:53738114 synonymous SNV . 0 28 hm5C_associated_SNPs_11676 4 0 1 0 1 FTO chr16:53738141 5'GT 53738141 Upstream 28bp
chr16 55523622 55523622 1 + C T rs41513346 55523610 + 55523590 55523630 41 AAGGTGCCCCCTGTGTCTTCCCCTTCACTTTCCTGGGCAAC AAGGTGCCCCCTGTGTCTTCCCCTTCACTTTCTTGGGCAAC < 41bp 1 0.0392619562493514 1 0.321379691362381 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP2 ENSG00000087245 CDS Human protein_coding chr16:55523610 chr16:55523622 synonymous SNV . 0 33 hm5C_associated_SNPs_11686 1 0 0 0 1 MMP2 chr16:55523563 3'AG 55523563 Downstream 60bp
chr16 55527073 55527073 1 + C T rs17859943 55527074 + 55527054 55527094 41 CAGGTGTTCTCCCCAGGGGCCTCTCCTGACATTGACCTTGG CAGGTGTTCTCCCCAGGGGTCTCTCCTGACATTGACCTTGG < 41bp 1 0.122666675755009 1 0.0997463762760162 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP2 ENSG00000087245 CDS Human protein_coding chr16:55527074 chr16:55527073 nonsynonymous SNV 0.905 0 20 hm5C_associated_SNPs_11687 1 0 0 0 1 MMP2 chr16:55527070 3'AG 55527070 Downstream 4bp
chr16 56659783 56659783 1 + G A rs141266321 56659789 + 56659769 56659809 41 CCCCAACTGCTCTTGCGCCACTGGTAAGGGAAGCTCTGCGC CCCCAACTGCTCTTACGCCACTGGTAAGGGAAGCTCTGCGC < 41bp 1 0.654370217915567 1 0.297144025564194 experiment 0.691259564168866 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MT1E ENSG00000169715 CDS Human protein_coding chr16:56659789 chr16:56659783 nonsynonymous SNV 0.986 1 15 hm5C_associated_SNPs_11690 0 0 1 0 1 MT1E chr16:56659791 5'GT 56659791 Upstream 9bp
chr16 57486788 57486788 1 + A C rs567112416 57486774 + 57486754 57486794 41 GTGAGGAGCAGTTGCAGCACCGCATCCTGACGGCAGCCCTT GTGAGGAGCAGTTGCAGCACCGCATCCTGACGGCCGCCCTT < 41bp 1 0.672641238658694 1 0.881620585918427 experiment 0.654717522682613 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57486774 chr16:57486788 synonymous SNV . 0 35 hm5C_associated_SNPs_11736 0 0 1 0 2 COQ9 chr16:57486713 3'AG 57486713 Downstream 76bp
chr16 57486788 57486788 1 + A C rs567112416 57486774 + 57486754 57486794 41 GTGAGGAGCAGTTGCAGCACCGCATCCTGACGGCAGCCCTT GTGAGGAGCAGTTGCAGCACCGCATCCTGACGGCCGCCCTT < 41bp 1 0.672641238658694 1 0.881620585918427 experiment 0.654717522682613 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57486774 chr16:57486788 synonymous SNV . 0 35 hm5C_associated_SNPs_11736 0 0 1 0 2 COQ9 chr16:57486848 5'GT 57486848 Upstream 61bp
chr16 57685221 57685221 1 + C G rs140963173 57685240 + 57685220 57685260 41 TCGAGAACTCCGAAGAGGCCCTCACAGTCCATGCCCCTTTC TGGAGAACTCCGAAGAGGCCCTCACAGTCCATGCCCCTTTC < 41bp 1 0.304641530155635 1 0.0617262125015259 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRG1 ENSG00000205336 CDS Human protein_coding chr16:57685240 chr16:57685221 nonsynonymous SNV 0.002 3 2 hm5C_associated_SNPs_11740 0 0 1 0 1 ADGRG1 chr16:57685155 3'AG 57685155 Downstream 67bp
chr16 57786711 57786711 1 + C T rs2965798 57786697 + 57786677 57786717 41 TCGCCTGGCCCAGGAGCGTCCTCTTCAACCCAGACGGCTGC TCGCCTGGCCCAGGAGCGTCCTCTTCAACCCAGATGGCTGC < 41bp 1 0.176661822376974 1 0.109075009822845 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57786697 chr16:57786711 synonymous SNV . 0 35 hm5C_associated_SNPs_11741 0 0 1 0 1 KATNB1 chr16:57786690 3'AG 57786690 Downstream 22bp
chr16 57786711 57786711 1 + C T rs2965798 57786702 + 57786682 57786722 41 TGGCCCAGGAGCGTCCTCTTCAACCCAGACGGCTGCTGCCT TGGCCCAGGAGCGTCCTCTTCAACCCAGATGGCTGCTGCCT < 41bp 1 0.363713873922449 1 0.131605178117752 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57786702 chr16:57786711 synonymous SNV . 0 30 hm5C_associated_SNPs_11742 0 0 1 0 1 KATNB1 chr16:57786690 3'AG 57786690 Downstream 22bp
chr16 66515363 66515363 1 + C T rs570636108 66515379 + 66515359 66515399 41 TGTGCGCTGTGCCTATCTCTCGATTCCAGGGCAGATGAGCC TGTGTGCTGTGCCTATCTCTCGATTCCAGGGCAGATGAGCC < 41bp 1 0.168064799630778 1 0.793425321578979 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BEAN1 ENSG00000166546 UTR3 Human protein_coding chr16:66515379 chr16:66515363 . . 0 5 hm5C_associated_SNPs_11751 0 0 0 0 1 BEAN1 chr16:66515341 3'AG 66515341 Downstream 23bp
chr16 66998552 66998552 1 + G A rs147731637 66998564 + 66998544 66998584 41 GCAGGGCTGTTCCACAGAGCCATCACACAGAGTGGGGTCAT GCAGGGCTATTCCACAGAGCCATCACACAGAGTGGGGTCAT < 41bp 1 0.3761578287227 1 0.0966837406158447 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:66998564 chr16:66998552 synonymous SNV . 0 9 hm5C_associated_SNPs_11757 0 0 1 0 2 CES3 chr16:66998526 3'AG 66998526 Downstream 27bp
chr16 66998552 66998552 1 + G A rs147731637 66998564 + 66998544 66998584 41 GCAGGGCTGTTCCACAGAGCCATCACACAGAGTGGGGTCAT GCAGGGCTATTCCACAGAGCCATCACACAGAGTGGGGTCAT < 41bp 1 0.3761578287227 1 0.0966837406158447 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:66998564 chr16:66998552 synonymous SNV . 0 9 hm5C_associated_SNPs_11757 0 0 1 0 2 CES3 chr16:66998630 5'GT 66998630 Upstream 79bp
chr16 67006793 67006793 1 + A G rs71649614 67006809 + 67006789 67006829 41 CCCAATTCAACCAGGCGGAACAATATCTGGAGATCAACCCA CCCAGTTCAACCAGGCGGAACAATATCTGGAGATCAACCCA < 41bp 1 0.285833356834577 1 0.285962343215942 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:67006809 chr16:67006793 synonymous SNV . 0 5 hm5C_associated_SNPs_11758 0 0 1 0 1 CES3 chr16:67006757 3'AG 67006757 Downstream 37bp
chr16 67208825 67208825 1 + C T rs368688530 67208843 + 67208823 67208863 41 TTCGAGGAAAGGGACGAGTCCGAAGGTGTGAGTCCGCCCAA TTTGAGGAAAGGGACGAGTCCGAAGGTGTGAGTCCGCCCAA < 41bp 1 0.791120079642646 1 0.613698065280914 experiment 0.417759840714709 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NOL3 ENSG00000140939 CDS Human protein_coding chr16:67208843 chr16:67208825 nonsynonymous SNV 0.006 1 3 hm5C_associated_SNPs_11759 0 0 0 0 1 NOL3 chr16:67208847 5'GT 67208847 Upstream 23bp
chr16 67314358 67314358 1 + G A rs61743439 67314349 + 67314329 67314369 41 GTAGGGGACCCAGGTCCAAGCAGGGCGATGCCATCTGGCTT GTAGGGGACCCAGGTCCAAGCAGGGCGATACCATCTGGCTT < 41bp 1 0.766169616592932 1 0.918499350547791 experiment 0.467660766814137 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67314349 chr16:67314358 nonsynonymous SNV 0.003 0 30 hm5C_associated_SNPs_11760 0 0 1 0 2 PLEKHG4 chr16:67314299 3'AG 67314299 Downstream 60bp
chr16 67314358 67314358 1 + G A rs61743439 67314349 + 67314329 67314369 41 GTAGGGGACCCAGGTCCAAGCAGGGCGATGCCATCTGGCTT GTAGGGGACCCAGGTCCAAGCAGGGCGATACCATCTGGCTT < 41bp 1 0.766169616592932 1 0.918499350547791 experiment 0.467660766814137 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67314349 chr16:67314358 nonsynonymous SNV 0.003 0 30 hm5C_associated_SNPs_11760 0 0 1 0 2 PLEKHG4 chr16:67314446 5'GT 67314446 Upstream 89bp
chr16 67316192 67316192 1 + G A rs147395532 67316185 + 67316165 67316205 41 GGCTGGCATGGCTACAATGCCAGGGGGGCCGGGAGCTGACA GGCTGGCATGGCTACAATGCCAGGGGGACCGGGAGCTGACA < 41bp 1 0.740012413932068 1 0.938367486000061 experiment 0.519975172135864 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67316185 chr16:67316192 nonsynonymous SNV 0.484 0 28 hm5C_associated_SNPs_11761 0 0 1 0 2 PLEKHG4 chr16:67316104 3'AG 67316104 Downstream 89bp
chr16 67316192 67316192 1 + G A rs147395532 67316185 + 67316165 67316205 41 GGCTGGCATGGCTACAATGCCAGGGGGGCCGGGAGCTGACA GGCTGGCATGGCTACAATGCCAGGGGGACCGGGAGCTGACA < 41bp 1 0.740012413932068 1 0.938367486000061 experiment 0.519975172135864 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67316185 chr16:67316192 nonsynonymous SNV 0.484 0 28 hm5C_associated_SNPs_11761 0 0 1 0 2 PLEKHG4 chr16:67316252 5'GT 67316252 Upstream 61bp
chr16 67572606 67572606 1 + C T rs140402307 67572603 + 67572583 67572623 41 CGGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCG CGGTCTTCAGCCCGCCGGGGCCCTCACGGAAGCCCCCCGCG < 41bp 1 0.0339637811104746 1 0.0698403418064117 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572603 chr16:67572606 nonsynonymous SNV 0.976 0 24 hm5C_associated_SNPs_11763 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 44bp
chr16 67572606 67572606 1 + C T rs140402307 67572603 + 67572583 67572623 41 CGGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCG CGGTCTTCAGCCCGCCGGGGCCCTCACGGAAGCCCCCCGCG < 41bp 1 0.0339637811104746 1 0.0698403418064117 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572603 chr16:67572606 nonsynonymous SNV 0.976 0 24 hm5C_associated_SNPs_11763 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 32bp
chr16 67572606 67572606 1 + C T rs140402307 67572604 + 67572584 67572624 41 GGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGC GGTCTTCAGCCCGCCGGGGCCCTCACGGAAGCCCCCCGCGC < 41bp 1 0.27775722633595 1 0.149694174528122 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572604 chr16:67572606 nonsynonymous SNV 0.976 0 23 hm5C_associated_SNPs_11764 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 44bp
chr16 67572606 67572606 1 + C T rs140402307 67572604 + 67572584 67572624 41 GGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGC GGTCTTCAGCCCGCCGGGGCCCTCACGGAAGCCCCCCGCGC < 41bp 1 0.27775722633595 1 0.149694174528122 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572604 chr16:67572606 nonsynonymous SNV 0.976 0 23 hm5C_associated_SNPs_11764 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 32bp
chr16 67572606 67572606 1 + C T rs140402307 67572605 + 67572585 67572625 41 GTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCT GTCTTCAGCCCGCCGGGGCCCTCACGGAAGCCCCCCGCGCT < 41bp 1 0.331725267310714 1 0.264867007732391 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572605 chr16:67572606 nonsynonymous SNV 0.976 0 22 hm5C_associated_SNPs_11765 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 44bp
chr16 67572606 67572606 1 + C T rs140402307 67572605 + 67572585 67572625 41 GTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCT GTCTTCAGCCCGCCGGGGCCCTCACGGAAGCCCCCCGCGCT < 41bp 1 0.331725267310714 1 0.264867007732391 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572605 chr16:67572606 nonsynonymous SNV 0.976 0 22 hm5C_associated_SNPs_11765 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 32bp
chr16 67578982 67578982 1 + C T rs150695752 67578992 + 67578972 67579012 41 CAGTATGGTGCCCGCCTCTCCCTGCGCCAGCCAGGCTTGGC CAGTATGGTGTCCGCCTCTCCCTGCGCCAGCCAGGCTTGGC < 41bp 1 0.106208904221762 1 0.174777865409851 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578992 chr16:67578982 nonsynonymous SNV 0.993 1 11 hm5C_associated_SNPs_11766 0 0 1 0 1 RIPOR1 chr16:67579020 5'GT 67579020 Upstream 39bp
chr16 68105011 68105011 1 + C A rs148423881 68104994 + 68104974 68105014 41 GGCCCCTGGAGGAGGTCATGCAGAAATACATCAGATACGTA GGCCCCTGGAGGAGGTCATGCAGAAATACATCAGATAAGTA < 41bp 1 0.572805738382537 1 0.334082067012787 experiment 0.854388523234927 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68104994 chr16:68105011 stopgain 0.666 1 38 hm5C_associated_SNPs_11770 0 0 1 0 1 DUS2 chr16:68105011 5'GT 68105011 Upstream 1bp
chr16 68331171 68331171 1 + T C rs143248146 68331160 + 68331140 68331180 41 CTATCACCAGAGGCACCCAGCAGCTTTGCTTTTGTGTCCTG CTATCACCAGAGGCACCCAGCAGCTTTGCTTCTGTGTCCTG < 41bp 1 0.412643987869498 1 0.227051466703415 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC7A6 ENSG00000103064 CDS Human protein_coding chr16:68331160 chr16:68331171 synonymous SNV . 0 32 hm5C_associated_SNPs_11777 0 0 1 0 1 SLC7A6 chr16:68331137 3'AG 68331137 Downstream 35bp
chr16 68390993 68390993 1 + G A rs143131470 68390977 + 68390957 68390997 41 GGGGGCTGCTGCTGGAACCCCCACTGCAAGCAGGCCGTCTA GGGGGCTGCTGCTGGAACCCCCACTGCAAGCAGGCCATCTA < 41bp 1 0.205427851301894 1 0.290209114551544 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68390977 chr16:68390993 nonsynonymous SNV 0.941 4 37 hm5C_associated_SNPs_11779 0 0 1 0 1 PRMT7 chr16:68390957 3'AG 68390957 Downstream 37bp
chr16 68390993 68390993 1 + G A rs143131470 68391008 + 68390988 68391028 41 AGGCCGTCTACTTCTTCAGCCCTGCCCCAGATCCCAGAGCA AGGCCATCTACTTCTTCAGCCCTGCCCCAGATCCCAGAGCA < 41bp 1 0.0752364300440326 1 0.116536527872086 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68391008 chr16:68390993 nonsynonymous SNV 0.941 4 6 hm5C_associated_SNPs_11780 0 0 1 0 1 PRMT7 chr16:68390957 3'AG 68390957 Downstream 37bp
chr16 70148798 70148798 1 + A G rs552342289 70148795 + 70148775 70148815 41 CTAAAGACTGCTGCAGAGTCCGGAGGAAGAAGTCACCTAGA CTAAAGACTGCTGCAGAGTCCGGGGGAAGAAGTCACCTAGA < 41bp 1 0.688933811289013 1 0.933434844017029 experiment 0.622132377421975 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDPR ENSG00000090857 UTR5 Human protein_coding chr16:70148795 chr16:70148798 . . 0 24 hm5C_associated_SNPs_11796 0 0 1 0 2 PDPR chr16:70148724 3'AG 70148724 Downstream 75bp
chr16 70148798 70148798 1 + A G rs552342289 70148795 + 70148775 70148815 41 CTAAAGACTGCTGCAGAGTCCGGAGGAAGAAGTCACCTAGA CTAAAGACTGCTGCAGAGTCCGGGGGAAGAAGTCACCTAGA < 41bp 1 0.688933811289013 1 0.933434844017029 experiment 0.622132377421975 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDPR ENSG00000090857 UTR5 Human protein_coding chr16:70148795 chr16:70148798 . . 0 24 hm5C_associated_SNPs_11796 0 0 1 0 2 PDPR chr16:70148833 5'GT 70148833 Upstream 36bp
chr16 70164333 70164333 1 + G A rs142301135 70164350 + 70164330 70164370 41 TCAGATCTATGACCGGACATCTGTTCTTCATGTAATGGTCA TCAAATCTATGACCGGACATCTGTTCTTCATGTAATGGTCA < 41bp 1 0.0655474027847279 1 0.0723890960216522 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70164350 chr16:70164333 synonymous SNV . 0 4 hm5C_associated_SNPs_11797 0 0 0 0 1 PDPR chr16:70164326 3'AG 70164326 Downstream 8bp
chr16 70380871 70380871 1 + A C rs536295255 70380882 + 70380862 70380902 41 ATTTTCACAAGTGGGTCTCCCTTGTCCGGGACTATGGCCAC ATTTTCACACGTGGGTCTCCCTTGTCCGGGACTATGGCCAC < 41bp 1 0.42421993932441 1 0.0183603167533875 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DDX19A ENSG00000168872 UTR5 Human protein_coding chr16:70380882 chr16:70380871 . . 0 10 hm5C_associated_SNPs_11807 0 0 1 0 1 DDX19A chr16:70380951 5'GT 70380951 Upstream 81bp
chr16 71956505 71956505 1 + G A rs72801788 71956504 + 71956484 71956524 41 AGTTGGTGGACCTGATGGAACGGTGCCAATGCCCATGCCCA AGTTGGTGGACCTGATGGAACAGTGCCAATGCCCATGCCCA < 41bp 1 0.633728613577474 1 0.247315764427185 experiment 0.732542772845052 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IST1 ENSG00000182149 CDS Human protein_coding chr16:71956504 chr16:71956505 synonymous SNV . 0 22 hm5C_associated_SNPs_11851 0 0 1 2 1 IST1 chr16:71956583 5'GT 71956583 Upstream 79bp
chr16 72141614 72141614 1 + C T rs183625590 72141626 + 72141606 72141646 41 ATGCTCATCGTGTCCTGTGACATGGGCTGCAGCTCCGAGAT ATGCTCATTGTGTCCTGTGACATGGGCTGCAGCTCCGAGAT < 41bp 1 0.709119835610319 1 0.325788855552673 experiment 0.581760328779362 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72141626 chr16:72141614 synonymous SNV . 0 9 hm5C_associated_SNPs_11852 0 0 1 0 2 DHX38 chr16:72141544 3'AG 72141544 Downstream 71bp
chr16 72141614 72141614 1 + C T rs183625590 72141626 + 72141606 72141646 41 ATGCTCATCGTGTCCTGTGACATGGGCTGCAGCTCCGAGAT ATGCTCATTGTGTCCTGTGACATGGGCTGCAGCTCCGAGAT < 41bp 1 0.709119835610319 1 0.325788855552673 experiment 0.581760328779362 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72141626 chr16:72141614 synonymous SNV . 0 9 hm5C_associated_SNPs_11852 0 0 1 0 2 DHX38 chr16:72141698 5'GT 72141698 Upstream 85bp
chr16 72141640 72141640 1 + C A rs11554765 72141626 + 72141606 72141646 41 ATGCTCATCGTGTCCTGTGACATGGGCTGCAGCTCCGAGAT ATGCTCATCGTGTCCTGTGACATGGGCTGCAGCTACGAGAT < 41bp 1 0.642532989410761 1 0.210878521203995 experiment 0.714934021178478 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72141626 chr16:72141640 nonsynonymous SNV 0.979 2 35 hm5C_associated_SNPs_11853 0 0 1 0 2 DHX38 chr16:72141544 3'AG 72141544 Downstream 97bp
chr16 72141640 72141640 1 + C A rs11554765 72141626 + 72141606 72141646 41 ATGCTCATCGTGTCCTGTGACATGGGCTGCAGCTCCGAGAT ATGCTCATCGTGTCCTGTGACATGGGCTGCAGCTACGAGAT < 41bp 1 0.642532989410761 1 0.210878521203995 experiment 0.714934021178478 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72141626 chr16:72141640 nonsynonymous SNV 0.979 2 35 hm5C_associated_SNPs_11853 0 0 1 0 2 DHX38 chr16:72141698 5'GT 72141698 Upstream 59bp
chr16 75256940 75256940 1 + G T rs570099637 75256925 + 75256905 75256945 41 CAGCGAGGACTGGGTGGTCACCGCTGCCCACTGCGGGGTCA CAGCGAGGACTGGGTGGTCACCGCTGCCCACTGCGTGGTCA < 41bp 1 0.51384761273693 1 0.249959230422974 experiment 0.97230477452614 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256925 chr16:75256940 nonsynonymous SNV 0.922 2 36 hm5C_associated_SNPs_11857 0 0 0 0 2 CTRB1 chr16:75256867 3'AG 75256867 Downstream 74bp
chr16 75256940 75256940 1 + G T rs570099637 75256925 + 75256905 75256945 41 CAGCGAGGACTGGGTGGTCACCGCTGCCCACTGCGGGGTCA CAGCGAGGACTGGGTGGTCACCGCTGCCCACTGCGTGGTCA < 41bp 1 0.51384761273693 1 0.249959230422974 experiment 0.97230477452614 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256925 chr16:75256940 nonsynonymous SNV 0.922 2 36 hm5C_associated_SNPs_11857 0 0 0 0 2 CTRB1 chr16:75256946 5'GT 75256946 Upstream 7bp
chr16 75256940 75256940 1 + G T rs570099637 75256926 + 75256906 75256946 41 AGCGAGGACTGGGTGGTCACCGCTGCCCACTGCGGGGTCAG AGCGAGGACTGGGTGGTCACCGCTGCCCACTGCGTGGTCAG < 41bp 1 0.588746562038926 1 0.195542514324188 experiment 0.822506875922149 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256926 chr16:75256940 nonsynonymous SNV 0.922 2 35 hm5C_associated_SNPs_11858 0 0 0 0 2 CTRB1 chr16:75256867 3'AG 75256867 Downstream 74bp
chr16 75256940 75256940 1 + G T rs570099637 75256926 + 75256906 75256946 41 AGCGAGGACTGGGTGGTCACCGCTGCCCACTGCGGGGTCAG AGCGAGGACTGGGTGGTCACCGCTGCCCACTGCGTGGTCAG < 41bp 1 0.588746562038926 1 0.195542514324188 experiment 0.822506875922149 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256926 chr16:75256940 nonsynonymous SNV 0.922 2 35 hm5C_associated_SNPs_11858 0 0 0 0 2 CTRB1 chr16:75256946 5'GT 75256946 Upstream 7bp
chr16 75256940 75256940 1 + G T rs570099637 75256928 + 75256908 75256948 41 CGAGGACTGGGTGGTCACCGCTGCCCACTGCGGGGTCAGGT CGAGGACTGGGTGGTCACCGCTGCCCACTGCGTGGTCAGGT < 41bp 1 0.410598392831484 1 0.110400527715683 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256928 chr16:75256940 nonsynonymous SNV 0.922 2 33 hm5C_associated_SNPs_11859 0 0 0 0 2 CTRB1 chr16:75256867 3'AG 75256867 Downstream 74bp
chr16 75256940 75256940 1 + G T rs570099637 75256928 + 75256908 75256948 41 CGAGGACTGGGTGGTCACCGCTGCCCACTGCGGGGTCAGGT CGAGGACTGGGTGGTCACCGCTGCCCACTGCGTGGTCAGGT < 41bp 1 0.410598392831484 1 0.110400527715683 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256928 chr16:75256940 nonsynonymous SNV 0.922 2 33 hm5C_associated_SNPs_11859 0 0 0 0 2 CTRB1 chr16:75256946 5'GT 75256946 Upstream 7bp
chr16 75256940 75256940 1 + G T rs570099637 75256931 + 75256911 75256951 41 GGACTGGGTGGTCACCGCTGCCCACTGCGGGGTCAGGTGAG GGACTGGGTGGTCACCGCTGCCCACTGCGTGGTCAGGTGAG < 41bp 1 0.102831980400961 1 0.181226819753647 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256931 chr16:75256940 nonsynonymous SNV 0.922 2 30 hm5C_associated_SNPs_11860 0 0 0 0 2 CTRB1 chr16:75256867 3'AG 75256867 Downstream 74bp
chr16 75256940 75256940 1 + G T rs570099637 75256931 + 75256911 75256951 41 GGACTGGGTGGTCACCGCTGCCCACTGCGGGGTCAGGTGAG GGACTGGGTGGTCACCGCTGCCCACTGCGTGGTCAGGTGAG < 41bp 1 0.102831980400961 1 0.181226819753647 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256931 chr16:75256940 nonsynonymous SNV 0.922 2 30 hm5C_associated_SNPs_11860 0 0 0 0 2 CTRB1 chr16:75256946 5'GT 75256946 Upstream 7bp
chr16 75256940 75256940 1 + G T rs570099637 75256932 + 75256912 75256952 41 GACTGGGTGGTCACCGCTGCCCACTGCGGGGTCAGGTGAGG GACTGGGTGGTCACCGCTGCCCACTGCGTGGTCAGGTGAGG < 41bp 1 0.217040632653735 1 0.151876419782639 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256932 chr16:75256940 nonsynonymous SNV 0.922 2 29 hm5C_associated_SNPs_11861 0 0 0 0 2 CTRB1 chr16:75256867 3'AG 75256867 Downstream 74bp
chr16 75256940 75256940 1 + G T rs570099637 75256932 + 75256912 75256952 41 GACTGGGTGGTCACCGCTGCCCACTGCGGGGTCAGGTGAGG GACTGGGTGGTCACCGCTGCCCACTGCGTGGTCAGGTGAGG < 41bp 1 0.217040632653735 1 0.151876419782639 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256932 chr16:75256940 nonsynonymous SNV 0.922 2 29 hm5C_associated_SNPs_11861 0 0 0 0 2 CTRB1 chr16:75256946 5'GT 75256946 Upstream 7bp
chr16 75256940 75256940 1 + G T rs570099637 75256933 + 75256913 75256953 41 ACTGGGTGGTCACCGCTGCCCACTGCGGGGTCAGGTGAGGA ACTGGGTGGTCACCGCTGCCCACTGCGTGGTCAGGTGAGGA < 41bp 1 0.38778444783051 1 0.0821460783481598 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256933 chr16:75256940 nonsynonymous SNV 0.922 2 28 hm5C_associated_SNPs_11862 0 0 0 0 2 CTRB1 chr16:75256867 3'AG 75256867 Downstream 74bp
chr16 75256940 75256940 1 + G T rs570099637 75256933 + 75256913 75256953 41 ACTGGGTGGTCACCGCTGCCCACTGCGGGGTCAGGTGAGGA ACTGGGTGGTCACCGCTGCCCACTGCGTGGTCAGGTGAGGA < 41bp 1 0.38778444783051 1 0.0821460783481598 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256933 chr16:75256940 nonsynonymous SNV 0.922 2 28 hm5C_associated_SNPs_11862 0 0 0 0 2 CTRB1 chr16:75256946 5'GT 75256946 Upstream 7bp
chr16 75256940 75256940 1 + G T rs570099637 75256935 + 75256915 75256955 41 TGGGTGGTCACCGCTGCCCACTGCGGGGTCAGGTGAGGACC TGGGTGGTCACCGCTGCCCACTGCGTGGTCAGGTGAGGACC < 41bp 1 0.720513922203987 1 0.227865964174271 experiment 0.558972155592026 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256935 chr16:75256940 nonsynonymous SNV 0.922 2 26 hm5C_associated_SNPs_11863 0 0 0 0 2 CTRB1 chr16:75256867 3'AG 75256867 Downstream 74bp
chr16 75256940 75256940 1 + G T rs570099637 75256935 + 75256915 75256955 41 TGGGTGGTCACCGCTGCCCACTGCGGGGTCAGGTGAGGACC TGGGTGGTCACCGCTGCCCACTGCGTGGTCAGGTGAGGACC < 41bp 1 0.720513922203987 1 0.227865964174271 experiment 0.558972155592026 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256935 chr16:75256940 nonsynonymous SNV 0.922 2 26 hm5C_associated_SNPs_11863 0 0 0 0 2 CTRB1 chr16:75256946 5'GT 75256946 Upstream 7bp
chr16 75256940 75256940 1 + G T rs570099637 75256938 + 75256918 75256958 41 GTGGTCACCGCTGCCCACTGCGGGGTCAGGTGAGGACCGGG GTGGTCACCGCTGCCCACTGCGTGGTCAGGTGAGGACCGGG < 41bp 1 0.527543492692527 1 0.591456115245819 experiment 0.944913014614946 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256938 chr16:75256940 nonsynonymous SNV 0.922 2 23 hm5C_associated_SNPs_11864 0 0 0 0 2 CTRB1 chr16:75256867 3'AG 75256867 Downstream 74bp
chr16 75256940 75256940 1 + G T rs570099637 75256938 + 75256918 75256958 41 GTGGTCACCGCTGCCCACTGCGGGGTCAGGTGAGGACCGGG GTGGTCACCGCTGCCCACTGCGTGGTCAGGTGAGGACCGGG < 41bp 1 0.527543492692527 1 0.591456115245819 experiment 0.944913014614946 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256938 chr16:75256940 nonsynonymous SNV 0.922 2 23 hm5C_associated_SNPs_11864 0 0 0 0 2 CTRB1 chr16:75256946 5'GT 75256946 Upstream 7bp
chr16 75257049 75257049 1 + G A rs549396142 75257041 + 75257021 75257061 41 CCACAACGCTCTGCCCAGGACCTCCGACGTGGTCGTGGCTG CCACAACGCTCTGCCCAGGACCTCCGACATGGTCGTGGCTG < 41bp 1 0.0535596343145792 1 0.0291597545146942 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75257041 chr16:75257049 nonsynonymous SNV 0.000 1 29 hm5C_associated_SNPs_11865 0 0 0 0 2 CTRB1 chr16:75257039 3'AG 75257039 Downstream 11bp
chr16 75257049 75257049 1 + G A rs549396142 75257041 + 75257021 75257061 41 CCACAACGCTCTGCCCAGGACCTCCGACGTGGTCGTGGCTG CCACAACGCTCTGCCCAGGACCTCCGACATGGTCGTGGCTG < 41bp 1 0.0535596343145792 1 0.0291597545146942 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75257041 chr16:75257049 nonsynonymous SNV 0.000 1 29 hm5C_associated_SNPs_11865 0 0 0 0 2 CTRB1 chr16:75257117 5'GT 75257117 Upstream 69bp
chr16 75257049 75257049 1 + G A rs549396142 75257042 + 75257022 75257062 41 CACAACGCTCTGCCCAGGACCTCCGACGTGGTCGTGGCTGG CACAACGCTCTGCCCAGGACCTCCGACATGGTCGTGGCTGG < 41bp 1 0.470800009205357 1 0.812986254692078 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75257042 chr16:75257049 nonsynonymous SNV 0.000 1 28 hm5C_associated_SNPs_11866 0 0 0 0 2 CTRB1 chr16:75257039 3'AG 75257039 Downstream 11bp
chr16 75257049 75257049 1 + G A rs549396142 75257042 + 75257022 75257062 41 CACAACGCTCTGCCCAGGACCTCCGACGTGGTCGTGGCTGG CACAACGCTCTGCCCAGGACCTCCGACATGGTCGTGGCTGG < 41bp 1 0.470800009205357 1 0.812986254692078 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75257042 chr16:75257049 nonsynonymous SNV 0.000 1 28 hm5C_associated_SNPs_11866 0 0 0 0 2 CTRB1 chr16:75257117 5'GT 75257117 Upstream 69bp
chr16 75257049 75257049 1 + G A rs549396142 75257044 + 75257024 75257064 41 CAACGCTCTGCCCAGGACCTCCGACGTGGTCGTGGCTGGGG CAACGCTCTGCCCAGGACCTCCGACATGGTCGTGGCTGGGG < 41bp 1 0.118097669243064 1 0.572396636009216 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75257044 chr16:75257049 nonsynonymous SNV 0.000 1 26 hm5C_associated_SNPs_11867 0 0 0 0 2 CTRB1 chr16:75257039 3'AG 75257039 Downstream 11bp
chr16 75257049 75257049 1 + G A rs549396142 75257044 + 75257024 75257064 41 CAACGCTCTGCCCAGGACCTCCGACGTGGTCGTGGCTGGGG CAACGCTCTGCCCAGGACCTCCGACATGGTCGTGGCTGGGG < 41bp 1 0.118097669243064 1 0.572396636009216 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75257044 chr16:75257049 nonsynonymous SNV 0.000 1 26 hm5C_associated_SNPs_11867 0 0 0 0 2 CTRB1 chr16:75257117 5'GT 75257117 Upstream 69bp
chr16 75257049 75257049 1 + G A rs549396142 75257045 + 75257025 75257065 41 AACGCTCTGCCCAGGACCTCCGACGTGGTCGTGGCTGGGGA AACGCTCTGCCCAGGACCTCCGACATGGTCGTGGCTGGGGA < 41bp 1 0.637223730155864 1 0.868939697742462 experiment 0.725552539688272 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75257045 chr16:75257049 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_11868 0 0 0 0 2 CTRB1 chr16:75257039 3'AG 75257039 Downstream 11bp
chr16 75257049 75257049 1 + G A rs549396142 75257045 + 75257025 75257065 41 AACGCTCTGCCCAGGACCTCCGACGTGGTCGTGGCTGGGGA AACGCTCTGCCCAGGACCTCCGACATGGTCGTGGCTGGGGA < 41bp 1 0.637223730155864 1 0.868939697742462 experiment 0.725552539688272 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75257045 chr16:75257049 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_11868 0 0 0 0 2 CTRB1 chr16:75257117 5'GT 75257117 Upstream 69bp
chr16 75257049 75257049 1 + G A rs549396142 75257048 + 75257028 75257068 41 GCTCTGCCCAGGACCTCCGACGTGGTCGTGGCTGGGGAGTT GCTCTGCCCAGGACCTCCGACATGGTCGTGGCTGGGGAGTT < 41bp 1 0.352348075631155 1 0.17699334025383 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75257048 chr16:75257049 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_11869 0 0 0 0 2 CTRB1 chr16:75257039 3'AG 75257039 Downstream 11bp
chr16 75257049 75257049 1 + G A rs549396142 75257048 + 75257028 75257068 41 GCTCTGCCCAGGACCTCCGACGTGGTCGTGGCTGGGGAGTT GCTCTGCCCAGGACCTCCGACATGGTCGTGGCTGGGGAGTT < 41bp 1 0.352348075631155 1 0.17699334025383 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75257048 chr16:75257049 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_11869 0 0 0 0 2 CTRB1 chr16:75257117 5'GT 75257117 Upstream 69bp
chr16 75257049 75257049 1 + G A rs549396142 75257054 + 75257034 75257074 41 CCCAGGACCTCCGACGTGGTCGTGGCTGGGGAGTTTGACCA CCCAGGACCTCCGACATGGTCGTGGCTGGGGAGTTTGACCA < 41bp 1 0.631763787708526 1 0.414403408765793 experiment 0.736472424582948 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75257054 chr16:75257049 nonsynonymous SNV 0.000 1 16 hm5C_associated_SNPs_11870 0 0 0 0 2 CTRB1 chr16:75257039 3'AG 75257039 Downstream 11bp
chr16 75257049 75257049 1 + G A rs549396142 75257054 + 75257034 75257074 41 CCCAGGACCTCCGACGTGGTCGTGGCTGGGGAGTTTGACCA CCCAGGACCTCCGACATGGTCGTGGCTGGGGAGTTTGACCA < 41bp 1 0.631763787708526 1 0.414403408765793 experiment 0.736472424582948 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75257054 chr16:75257049 nonsynonymous SNV 0.000 1 16 hm5C_associated_SNPs_11870 0 0 0 0 2 CTRB1 chr16:75257117 5'GT 75257117 Upstream 69bp
chr16 75257049 75257049 1 + G A rs549396142 75257059 + 75257039 75257079 41 GACCTCCGACGTGGTCGTGGCTGGGGAGTTTGACCAGGGCT GACCTCCGACATGGTCGTGGCTGGGGAGTTTGACCAGGGCT < 41bp 1 0.693049923915042 1 0.747194528579712 experiment 0.613900152169917 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75257059 chr16:75257049 nonsynonymous SNV 0.000 1 11 hm5C_associated_SNPs_11871 0 0 0 0 2 CTRB1 chr16:75257039 3'AG 75257039 Downstream 11bp
chr16 75257049 75257049 1 + G A rs549396142 75257059 + 75257039 75257079 41 GACCTCCGACGTGGTCGTGGCTGGGGAGTTTGACCAGGGCT GACCTCCGACATGGTCGTGGCTGGGGAGTTTGACCAGGGCT < 41bp 1 0.693049923915042 1 0.747194528579712 experiment 0.613900152169917 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75257059 chr16:75257049 nonsynonymous SNV 0.000 1 11 hm5C_associated_SNPs_11871 0 0 0 0 2 CTRB1 chr16:75257117 5'GT 75257117 Upstream 69bp
chr16 75600365 75600365 1 + G A rs8192515 75600370 + 75600350 75600390 41 CCGCGAGCCGGTTCCGTCCCCTTCCCGCCGCCGCCATGAAG CCGCGAGCCGGTTCCATCCCCTTCCCGCCGCCGCCATGAAG < 41bp 1 0.471884420433644 1 0.114494800567627 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GABARAPL2 ENSG00000259992 ncRNA_intronic Human protein_coding chr16:75600370 chr16:75600365 . . 0 16 hm5C_associated_SNPs_11872 0 0 1 0 1 GABARAPL2 chr16:75600418 5'GT 75600418 Upstream 54bp
chr16 75600380 75600380 1 + C T rs201335061 75600370 + 75600350 75600390 41 CCGCGAGCCGGTTCCGTCCCCTTCCCGCCGCCGCCATGAAG CCGCGAGCCGGTTCCGTCCCCTTCCCGCCGTCGCCATGAAG < 41bp 1 0.457312810569117 1 0.0886068344116211 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GABARAPL2 ENSG00000259992 ncRNA_intronic Human protein_coding chr16:75600370 chr16:75600380 . . 0 31 hm5C_associated_SNPs_11873 0 0 1 0 1 GABARAPL2 chr16:75600418 5'GT 75600418 Upstream 39bp
chr16 84682169 84682169 1 + G A rs527778788 84682160 + 84682140 84682180 41 AGCCATGGCTGCGCAGCGGGCTGGCCGGGGGTCTCCTGAAC AGCCATGGCTGCGCAGCGGGCTGGCCGGGAGTCTCCTGAAC < 41bp 1 0.743380256665379 1 0.302707493305206 experiment 0.513239486669242 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLHL36 ENSG00000135686 UTR5 Human protein_coding chr16:84682160 chr16:84682169 . . 0 30 hm5C_associated_SNPs_11898 0 0 1 0 1 KLHL36 chr16:84682255 5'GT 84682255 Upstream 87bp
chr16 84682169 84682169 1 + G A rs527778788 84682164 + 84682144 84682184 41 ATGGCTGCGCAGCGGGCTGGCCGGGGGTCTCCTGAACCCGG ATGGCTGCGCAGCGGGCTGGCCGGGAGTCTCCTGAACCCGG < 41bp 1 0.783096785376949 1 0.798636436462402 experiment 0.433806429246101 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLHL36 ENSG00000135686 UTR5 Human protein_coding chr16:84682164 chr16:84682169 . . 0 26 hm5C_associated_SNPs_11899 0 0 1 0 1 KLHL36 chr16:84682255 5'GT 84682255 Upstream 87bp
chr16 84684525 84684525 1 + G A rs79842977 84684521 + 84684501 84684541 41 GTGTCTCGGCCATACAAGATCAGCGAATCATCAAAGGTCTG GTGTCTCGGCCATACAAGATCAGCAAATCATCAAAGGTCTG < 41bp 1 0.628818883503488 1 0.0893419086933136 experiment 0.742362232993024 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHL36 ENSG00000135686 CDS Human protein_coding chr16:84684521 chr16:84684525 nonsynonymous SNV 0.933 1 25 hm5C_associated_SNPs_11900 0 0 0 0 2 KLHL36 chr16:84684458 3'AG 84684458 Downstream 68bp
chr16 84684525 84684525 1 + G A rs79842977 84684521 + 84684501 84684541 41 GTGTCTCGGCCATACAAGATCAGCGAATCATCAAAGGTCTG GTGTCTCGGCCATACAAGATCAGCAAATCATCAAAGGTCTG < 41bp 1 0.628818883503488 1 0.0893419086933136 experiment 0.742362232993024 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHL36 ENSG00000135686 CDS Human protein_coding chr16:84684521 chr16:84684525 nonsynonymous SNV 0.933 1 25 hm5C_associated_SNPs_11900 0 0 0 0 2 KLHL36 chr16:84684536 5'GT 84684536 Upstream 12bp
chr16 84884200 84884200 1 + C T rs34925006 84884208 + 84884188 84884228 41 CACCAACAAGATCGGTTGTGCTGTGAACACCTGCCGGAAGA CACCAACAAGATTGGTTGTGCTGTGAACACCTGCCGGAAGA < 41bp 1 0.272559171488552 1 0.111455500125885 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84884208 chr16:84884200 synonymous SNV . 0 13 hm5C_associated_SNPs_11908 0 0 0 0 2 CRISPLD2 chr16:84884174 3'AG 84884174 Downstream 27bp
chr16 84884200 84884200 1 + C T rs34925006 84884208 + 84884188 84884228 41 CACCAACAAGATCGGTTGTGCTGTGAACACCTGCCGGAAGA CACCAACAAGATTGGTTGTGCTGTGAACACCTGCCGGAAGA < 41bp 1 0.272559171488552 1 0.111455500125885 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84884208 chr16:84884200 synonymous SNV . 0 13 hm5C_associated_SNPs_11908 0 0 0 0 2 CRISPLD2 chr16:84884289 5'GT 84884289 Upstream 90bp
chr16 85689392 85689392 1 + C A rs138993136 85689403 + 85689383 85689423 41 CCCCACCCCCGGCTCCCTGCCCCCACTGCACCCATCAGCGA CCCCACCCCAGGCTCCCTGCCCCCACTGCACCCATCAGCGA < 41bp 1 0.475137875990398 1 0.306521832942963 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85689403 chr16:85689392 synonymous SNV . 0 10 hm5C_associated_SNPs_11911 0 0 1 0 1 GSE1 chr16:85689332 3'AG 85689332 Downstream 61bp
chr16 85691168 85691168 1 + C T rs546732682 85691160 + 85691140 85691180 41 GAGCAGCACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGA GAGCAGCACCTGGATATGGGCCGGCCCCTGGTGCCGGCGGA < 41bp 1 0.357067618917259 1 0.485369980335236 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691160 chr16:85691168 nonsynonymous SNV 0.548 0 29 hm5C_associated_SNPs_11912 0 0 1 0 1 GSE1 chr16:85691210 5'GT 85691210 Upstream 43bp
chr16 85691168 85691168 1 + C T rs546732682 85691161 + 85691141 85691181 41 AGCAGCACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGAG AGCAGCACCTGGATATGGGCCGGCCCCTGGTGCCGGCGGAG < 41bp 1 0.326027894053045 1 0.650067746639252 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691161 chr16:85691168 nonsynonymous SNV 0.548 0 28 hm5C_associated_SNPs_11913 0 0 1 0 1 GSE1 chr16:85691210 5'GT 85691210 Upstream 43bp
chr16 85691168 85691168 1 + C T rs546732682 85691167 + 85691147 85691187 41 ACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGAGGCAGAG ACCTGGATATGGGCCGGCCCCTGGTGCCGGCGGAGGCAGAG < 41bp 1 0.758493364621084 1 0.412212342023849 experiment 0.483013270757832 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691167 chr16:85691168 nonsynonymous SNV 0.548 0 22 hm5C_associated_SNPs_11914 0 0 1 0 1 GSE1 chr16:85691210 5'GT 85691210 Upstream 43bp
chr16 85691168 85691168 1 + C T rs546732682 85691173 + 85691153 85691193 41 ATATGGGCCGGCCCCCGGTGCCGGCGGAGGCAGAGCACAGG ATATGGGCCGGCCCCTGGTGCCGGCGGAGGCAGAGCACAGG < 41bp 1 0.272582259570125 1 0.692564606666565 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691173 chr16:85691168 nonsynonymous SNV 0.548 0 16 hm5C_associated_SNPs_11915 0 0 1 0 1 GSE1 chr16:85691210 5'GT 85691210 Upstream 43bp
chr16 85833295 85833295 1 + C G rs2233447 85833301 + 85833281 85833321 41 CTCCGCGGCGCGGCCTTGCTCTCTTCCGGTCGCGGGACACC CTCCGCGGCGCGGCGTTGCTCTCTTCCGGTCGCGGGACACC < 41bp 1 0.475556258555974 1 0.100087255239487 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COX4I1 ENSG00000131143 UTR5 Human protein_coding chr16:85833301 chr16:85833295 . . 0 15 hm5C_associated_SNPs_11918 0 0 1 0 1 COX4I1 chr16:85833358 5'GT 85833358 Upstream 64bp
chr16 85833314 85833314 1 + G A rs2233446 85833301 + 85833281 85833321 41 CTCCGCGGCGCGGCCTTGCTCTCTTCCGGTCGCGGGACACC CTCCGCGGCGCGGCCTTGCTCTCTTCCGGTCGCAGGACACC < 41bp 1 0.467724598373413 1 0.169442117214203 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COX4I1 ENSG00000131143 UTR5 Human protein_coding chr16:85833301 chr16:85833314 . . 0 34 hm5C_associated_SNPs_11919 0 0 1 0 1 COX4I1 chr16:85833358 5'GT 85833358 Upstream 45bp
chr16 88780135 88780135 1 + C T rs553820121 88780149 + 88780129 88780169 41 TTTCTACAACCGCCTGTTCTCCGTTCCTTCTGTCTTCACAC TTTCTATAACCGCCTGTTCTCCGTTCCTTCTGTCTTCACAC < 41bp 1 0.168719971761003 1 0.0844592154026031 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88780149 chr16:88780135 synonymous SNV . 0 7 hm5C_associated_SNPs_11936 0 0 0 0 2 CTU2 chr16:88780055 3'AG 88780055 Downstream 81bp
chr16 88780135 88780135 1 + C T rs553820121 88780149 + 88780129 88780169 41 TTTCTACAACCGCCTGTTCTCCGTTCCTTCTGTCTTCACAC TTTCTATAACCGCCTGTTCTCCGTTCCTTCTGTCTTCACAC < 41bp 1 0.168719971761003 1 0.0844592154026031 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88780149 chr16:88780135 synonymous SNV . 0 7 hm5C_associated_SNPs_11936 0 0 0 0 2 CTU2 chr16:88780186 5'GT 88780186 Upstream 52bp
chr16 88780150 88780150 1 + C A rs2340974 88780149 + 88780129 88780169 41 TTTCTACAACCGCCTGTTCTCCGTTCCTTCTGTCTTCACAC TTTCTACAACCGCCTGTTCTCAGTTCCTTCTGTCTTCACAC < 41bp 1 0.402043172286216 1 0.216579347848892 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88780149 chr16:88780150 synonymous SNV . 0 22 hm5C_associated_SNPs_11937 0 0 0 0 2 CTU2 chr16:88780055 3'AG 88780055 Downstream 96bp
chr16 88780150 88780150 1 + C A rs2340974 88780149 + 88780129 88780169 41 TTTCTACAACCGCCTGTTCTCCGTTCCTTCTGTCTTCACAC TTTCTACAACCGCCTGTTCTCAGTTCCTTCTGTCTTCACAC < 41bp 1 0.402043172286216 1 0.216579347848892 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88780149 chr16:88780150 synonymous SNV . 0 22 hm5C_associated_SNPs_11937 0 0 0 0 2 CTU2 chr16:88780186 5'GT 88780186 Upstream 37bp
chr16 88780603 88780603 1 + C G rs73262673 88780612 + 88780592 88780632 41 AGGCTGCAGACCCAGTTCCCCTCCACTGTCAGCACTGTGTA AGGCTGCAGACGCAGTTCCCCTCCACTGTCAGCACTGTGTA < 41bp 1 0.725999438450064 1 0.888290882110596 experiment 0.548001123099872 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88780612 chr16:88780603 synonymous SNV . 0 12 hm5C_associated_SNPs_11938 0 0 1 0 2 CTU2 chr16:88780544 3'AG 88780544 Downstream 60bp
chr16 88780603 88780603 1 + C G rs73262673 88780612 + 88780592 88780632 41 AGGCTGCAGACCCAGTTCCCCTCCACTGTCAGCACTGTGTA AGGCTGCAGACGCAGTTCCCCTCCACTGTCAGCACTGTGTA < 41bp 1 0.725999438450064 1 0.888290882110596 experiment 0.548001123099872 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88780612 chr16:88780603 synonymous SNV . 0 12 hm5C_associated_SNPs_11938 0 0 1 0 2 CTU2 chr16:88780635 5'GT 88780635 Upstream 33bp
chr16 88781004 88781004 1 + C T rs148822873 88781016 + 88780996 88781036 41 CAGTGCCACGGCTTTTGGGGCTCAGACCTCCTCGCGTCTCT CAGTGCCATGGCTTTTGGGGCTCAGACCTCCTCGCGTCTCT < 41bp 1 0.264628080918466 1 0.238263964653015 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781016 chr16:88781004 nonsynonymous SNV 0.829 3 9 hm5C_associated_SNPs_11939 0 0 1 0 1 CTU2 chr16:88780995 3'AG 88780995 Downstream 10bp
chr16 88781014 88781014 1 + G A rs141242265 88781016 + 88780996 88781036 41 CAGTGCCACGGCTTTTGGGGCTCAGACCTCCTCGCGTCTCT CAGTGCCACGGCTTTTGGAGCTCAGACCTCCTCGCGTCTCT < 41bp 1 0.322468957383747 1 0.269689202308655 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781016 chr16:88781014 synonymous SNV . 0 19 hm5C_associated_SNPs_11940 0 0 1 0 1 CTU2 chr16:88780995 3'AG 88780995 Downstream 20bp
chr16 88781040 88781040 1 + A G rs8059048 88781052 + 88781032 88781072 41 TCTCTCCCAGATGCAGTCACCCATCCCCCTGACTGAGACCC TCTCTCCCGGATGCAGTCACCCATCCCCCTGACTGAGACCC < 41bp 1 0.0640851535168234 1 0.208890289068222 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781052 chr16:88781040 nonsynonymous SNV 0.063 1 9 hm5C_associated_SNPs_11941 0 0 1 0 1 CTU2 chr16:88780995 3'AG 88780995 Downstream 46bp
chr16 88781062 88781062 1 + G A rs28672793 88781052 + 88781032 88781072 41 TCTCTCCCAGATGCAGTCACCCATCCCCCTGACTGAGACCC TCTCTCCCAGATGCAGTCACCCATCCCCCTAACTGAGACCC < 41bp 1 0.0537545510280736 1 0.181927859783173 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781052 chr16:88781062 synonymous SNV . 0 31 hm5C_associated_SNPs_11942 0 0 1 0 2 CTU2 chr16:88780995 3'AG 88780995 Downstream 68bp
chr16 88781062 88781062 1 + G A rs28672793 88781052 + 88781032 88781072 41 TCTCTCCCAGATGCAGTCACCCATCCCCCTGACTGAGACCC TCTCTCCCAGATGCAGTCACCCATCCCCCTAACTGAGACCC < 41bp 1 0.0537545510280736 1 0.181927859783173 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781052 chr16:88781062 synonymous SNV . 0 31 hm5C_associated_SNPs_11942 0 0 1 0 2 CTU2 chr16:88781145 5'GT 88781145 Upstream 84bp
chr16 88804730 88804730 1 - C G rs150688010 88804748 - 88804728 88804768 41 CCCATCAGCACTCGGGGCTTCAGCAGACTCTGCGTCGCGGT CCCATCAGCACTCGGGGCTTCAGCAGACTCTGCGTCGCCGT < 41bp 1 0.623625910990833 1 0.344673454761505 experiment 0.752748178018334 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PIEZO1 ENSG00000103335 CDS Human protein_coding chr16:88804748 chr16:88804730 synonymous SNV . 0 39 hm5C_associated_SNPs_11943 0 0 1 0 1 PIEZO1 chr16:88804635 5'GT 88804635 Upstream 96bp
chr16 88804731 88804731 1 - G A rs539005229 88804748 - 88804728 88804768 41 CCCATCAGCACTCGGGGCTTCAGCAGACTCTGCGTCGCGGT CCCATCAGCACTCGGGGCTTCAGCAGACTCTGCGTCGTGGT < 41bp 1 0.55506363075206 1 0.253082156181335 experiment 0.88987273849588 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PIEZO1 ENSG00000103335 CDS Human protein_coding chr16:88804748 chr16:88804731 nonsynonymous SNV 0.000 0 38 hm5C_associated_SNPs_11944 0 0 1 0 1 PIEZO1 chr16:88804635 5'GT 88804635 Upstream 97bp
chr16 88804734 88804734 1 - A G rs7184427 88804748 - 88804728 88804768 41 CCCATCAGCACTCGGGGCTTCAGCAGACTCTGCGTCGCGGT CCCATCAGCACTCGGGGCTTCAGCAGACTCTGCGCCGCGGT < 41bp 1 0.602279729229848 1 0.558372914791107 experiment 0.795440541540305 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PIEZO1 ENSG00000103335 CDS Human protein_coding chr16:88804748 chr16:88804734 nonsynonymous SNV 0.001 0 35 hm5C_associated_SNPs_11945 0 0 1 0 1 PIEZO1 chr16:88804635 5'GT 88804635 Upstream 100bp
chr16 88804765 88804765 1 - T C rs114403731 88804748 - 88804728 88804768 41 CCCATCAGCACTCGGGGCTTCAGCAGACTCTGCGTCGCGGT CCCGTCAGCACTCGGGGCTTCAGCAGACTCTGCGTCGCGGT < 41bp 1 0.605777724254906 1 0.328189313411713 experiment 0.788444551490189 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PIEZO1 ENSG00000103335 CDS Human protein_coding chr16:88804748 chr16:88804765 nonsynonymous SNV 0.879 0 4 hm5C_associated_SNPs_11947 0 0 1 0 1 PIEZO1 chr16:88804848 3'AG 88804848 Downstream 84bp
chr16 88874545 88874545 1 + G A rs3218720 88874551 + 88874531 88874571 41 GAGAAGCACCTGCTGCTCCTCTCCGAGCTGCTGCCGGACTG GAGAAGCACCTGCTACTCCTCTCCGAGCTGCTGCCGGACTG < 41bp 1 0.797274459078198 1 0.79390013217926 experiment 0.405451081843605 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CDT1 ENSG00000167513 CDS Human protein_coding chr16:88874551 chr16:88874545 synonymous SNV . 0 15 hm5C_associated_SNPs_11948 0 0 1 0 1 CDT1 chr16:88874523 3'AG 88874523 Downstream 23bp
chr16 88874566 88874566 1 + G A rs139633564 88874551 + 88874531 88874571 41 GAGAAGCACCTGCTGCTCCTCTCCGAGCTGCTGCCGGACTG GAGAAGCACCTGCTGCTCCTCTCCGAGCTGCTGCCAGACTG < 41bp 1 0.771369218462754 1 0.821058750152588 experiment 0.457261563074493 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CDT1 ENSG00000167513 CDS Human protein_coding chr16:88874551 chr16:88874566 synonymous SNV . 0 36 hm5C_associated_SNPs_11949 1 0 1 0 1 CDT1 chr16:88874523 3'AG 88874523 Downstream 44bp
chr16 89603217 89603217 1 + C T rs144415749 89603199 + 89603179 89603219 41 CTCTTGACCAGCTACCCTCCCAGGGGACCATGAGGAAGCTC CTCTTGACCAGCTACCCTCCCAGGGGACCATGAGGAAGTTC < 41bp 1 0.696811761741601 1 0.501458942890167 experiment 0.606376476516798 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPG7 ENSG00000197912 CDS Human protein_coding chr16:89603199 chr16:89603217 nonsynonymous SNV 0.004 1 39 hm5C_associated_SNPs_11953 1 0 1 0 1 SPG7 chr16:89603173 3'AG 89603173 Downstream 45bp
chr16 89620302 89620302 1 + G A rs79756036 89620301 + 89620281 89620321 41 GCCCATCTCCTTCCCTGAGGCGCAGGAGGGCCTCATGGGCA GCCCATCTCCTTCCCTGAGGCACAGGAGGGCCTCATGGGCA < 41bp 1 0.612781914140148 1 0.401648491621017 experiment 0.774436171719703 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPG7 ENSG00000197912 CDS Human protein_coding chr16:89620301 chr16:89620302 synonymous SNV . 0 22 hm5C_associated_SNPs_11955 3 0 1 0 1 SPG7 chr16:89620368 5'GT 89620368 Upstream 67bp
chr16 89627460 89627460 1 + T G rs2280370 89627445 + 89627425 89627465 41 CGGCGCGTGGCCACGTGGTTCAACCAGCCGGCCCGTAAGAT CGGCGCGTGGCCACGTGGTTCAACCAGCCGGCCCGGAAGAT < 41bp 1 0.349510583177601 1 0.0785979330539703 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627445 chr16:89627460 synonymous SNV . 0 36 hm5C_associated_SNPs_11971 0 0 1 0 1 RPL13 chr16:89627471 5'GT 89627471 Upstream 12bp
chr16 89627460 89627460 1 + T G rs2280370 89627456 + 89627436 89627476 41 CACGTGGTTCAACCAGCCGGCCCGTAAGATCCGCAGGTGAG CACGTGGTTCAACCAGCCGGCCCGGAAGATCCGCAGGTGAG < 41bp 1 0.348739288579684 1 0.188221603631973 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627456 chr16:89627460 synonymous SNV . 0 25 hm5C_associated_SNPs_11972 0 0 1 0 1 RPL13 chr16:89627471 5'GT 89627471 Upstream 12bp
chr16 89627671 89627671 1 + C G rs174035 89627672 + 89627652 89627692 41 CCAAGGCGCGCCGCATCGCCCCGCGCCCCGCGTCGGGTCCC CCAAGGCGCGCCGCATCGCGCCGCGCCCCGCGTCGGGTCCC < 41bp 1 0.636704884003184 1 0.410935938358307 experiment 0.726590231993631 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627672 chr16:89627671 synonymous SNV . 0 20 hm5C_associated_SNPs_11973 0 0 1 0 2 RPL13 chr16:89627635 3'AG 89627635 Downstream 37bp
chr16 89627671 89627671 1 + C G rs174035 89627672 + 89627652 89627692 41 CCAAGGCGCGCCGCATCGCCCCGCGCCCCGCGTCGGGTCCC CCAAGGCGCGCCGCATCGCGCCGCGCCCCGCGTCGGGTCCC < 41bp 1 0.636704884003184 1 0.410935938358307 experiment 0.726590231993631 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627672 chr16:89627671 synonymous SNV . 0 20 hm5C_associated_SNPs_11973 0 0 1 0 2 RPL13 chr16:89627737 5'GT 89627737 Upstream 67bp
chr16 89627671 89627671 1 + C G rs174035 89627679 + 89627659 89627699 41 GCGCCGCATCGCCCCGCGCCCCGCGTCGGGTCCCATCCGGC GCGCCGCATCGCGCCGCGCCCCGCGTCGGGTCCCATCCGGC < 41bp 1 0.660243051344678 1 0.270209729671478 experiment 0.679513897310644 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627679 chr16:89627671 synonymous SNV . 0 13 hm5C_associated_SNPs_11974 0 0 1 0 2 RPL13 chr16:89627635 3'AG 89627635 Downstream 37bp
chr16 89627671 89627671 1 + C G rs174035 89627679 + 89627659 89627699 41 GCGCCGCATCGCCCCGCGCCCCGCGTCGGGTCCCATCCGGC GCGCCGCATCGCGCCGCGCCCCGCGTCGGGTCCCATCCGGC < 41bp 1 0.660243051344678 1 0.270209729671478 experiment 0.679513897310644 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627679 chr16:89627671 synonymous SNV . 0 13 hm5C_associated_SNPs_11974 0 0 1 0 2 RPL13 chr16:89627737 5'GT 89627737 Upstream 67bp
chr16 89627671 89627671 1 + C G rs174035 89627691 + 89627671 89627711 41 CCCGCGCCCCGCGTCGGGTCCCATCCGGCCCATCGTGCGCT GCCGCGCCCCGCGTCGGGTCCCATCCGGCCCATCGTGCGCT < 41bp 1 0.092350387161344 1 0.0990476608276367 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627691 chr16:89627671 synonymous SNV . 0 1 hm5C_associated_SNPs_11975 0 0 1 0 2 RPL13 chr16:89627635 3'AG 89627635 Downstream 37bp
chr16 89627671 89627671 1 + C G rs174035 89627691 + 89627671 89627711 41 CCCGCGCCCCGCGTCGGGTCCCATCCGGCCCATCGTGCGCT GCCGCGCCCCGCGTCGGGTCCCATCCGGCCCATCGTGCGCT < 41bp 1 0.092350387161344 1 0.0990476608276367 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627691 chr16:89627671 synonymous SNV . 0 1 hm5C_associated_SNPs_11975 0 0 1 0 2 RPL13 chr16:89627737 5'GT 89627737 Upstream 67bp
chr16 89627689 89627689 1 + T G rs564290531 89627672 + 89627652 89627692 41 CCAAGGCGCGCCGCATCGCCCCGCGCCCCGCGTCGGGTCCC CCAAGGCGCGCCGCATCGCCCCGCGCCCCGCGTCGGGGCCC < 41bp 1 0.68555696688485 1 0.323637783527374 experiment 0.6288860662303 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627672 chr16:89627689 synonymous SNV . 0 38 hm5C_associated_SNPs_11976 0 0 1 0 2 RPL13 chr16:89627635 3'AG 89627635 Downstream 55bp
chr16 89627689 89627689 1 + T G rs564290531 89627672 + 89627652 89627692 41 CCAAGGCGCGCCGCATCGCCCCGCGCCCCGCGTCGGGTCCC CCAAGGCGCGCCGCATCGCCCCGCGCCCCGCGTCGGGGCCC < 41bp 1 0.68555696688485 1 0.323637783527374 experiment 0.6288860662303 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627672 chr16:89627689 synonymous SNV . 0 38 hm5C_associated_SNPs_11976 0 0 1 0 2 RPL13 chr16:89627737 5'GT 89627737 Upstream 49bp
chr16 89627689 89627689 1 + T G rs564290531 89627679 + 89627659 89627699 41 GCGCCGCATCGCCCCGCGCCCCGCGTCGGGTCCCATCCGGC GCGCCGCATCGCCCCGCGCCCCGCGTCGGGGCCCATCCGGC < 41bp 1 0.654700318435396 1 0.306451112031937 experiment 0.690599363129207 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627679 chr16:89627689 synonymous SNV . 0 31 hm5C_associated_SNPs_11977 0 0 1 0 2 RPL13 chr16:89627635 3'AG 89627635 Downstream 55bp
chr16 89627689 89627689 1 + T G rs564290531 89627679 + 89627659 89627699 41 GCGCCGCATCGCCCCGCGCCCCGCGTCGGGTCCCATCCGGC GCGCCGCATCGCCCCGCGCCCCGCGTCGGGGCCCATCCGGC < 41bp 1 0.654700318435396 1 0.306451112031937 experiment 0.690599363129207 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627679 chr16:89627689 synonymous SNV . 0 31 hm5C_associated_SNPs_11977 0 0 1 0 2 RPL13 chr16:89627737 5'GT 89627737 Upstream 49bp
chr16 89627689 89627689 1 + T G rs564290531 89627691 + 89627671 89627711 41 CCCGCGCCCCGCGTCGGGTCCCATCCGGCCCATCGTGCGCT CCCGCGCCCCGCGTCGGGGCCCATCCGGCCCATCGTGCGCT < 41bp 1 0.0652525017561101 1 0.0685529708862305 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627691 chr16:89627689 synonymous SNV . 0 19 hm5C_associated_SNPs_11978 0 0 1 0 2 RPL13 chr16:89627635 3'AG 89627635 Downstream 55bp
chr16 89627689 89627689 1 + T G rs564290531 89627691 + 89627671 89627711 41 CCCGCGCCCCGCGTCGGGTCCCATCCGGCCCATCGTGCGCT CCCGCGCCCCGCGTCGGGGCCCATCCGGCCCATCGTGCGCT < 41bp 1 0.0652525017561101 1 0.0685529708862305 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627691 chr16:89627689 synonymous SNV . 0 19 hm5C_associated_SNPs_11978 0 0 1 0 2 RPL13 chr16:89627737 5'GT 89627737 Upstream 49bp
chr16 89627689 89627689 1 + T G rs564290531 89627692 + 89627672 89627712 41 CCGCGCCCCGCGTCGGGTCCCATCCGGCCCATCGTGCGCTG CCGCGCCCCGCGTCGGGGCCCATCCGGCCCATCGTGCGCTG < 41bp 1 0.432832975362844 1 0.0840460360050201 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627692 chr16:89627689 synonymous SNV . 0 18 hm5C_associated_SNPs_11979 0 0 1 0 2 RPL13 chr16:89627635 3'AG 89627635 Downstream 55bp
chr16 89627689 89627689 1 + T G rs564290531 89627692 + 89627672 89627712 41 CCGCGCCCCGCGTCGGGTCCCATCCGGCCCATCGTGCGCTG CCGCGCCCCGCGTCGGGGCCCATCCGGCCCATCGTGCGCTG < 41bp 1 0.432832975362844 1 0.0840460360050201 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627692 chr16:89627689 synonymous SNV . 0 18 hm5C_associated_SNPs_11979 0 0 1 0 2 RPL13 chr16:89627737 5'GT 89627737 Upstream 49bp
chr16 89627689 89627689 1 + T G rs564290531 89627695 + 89627675 89627715 41 CGCCCCGCGTCGGGTCCCATCCGGCCCATCGTGCGCTGCCC CGCCCCGCGTCGGGGCCCATCCGGCCCATCGTGCGCTGCCC < 41bp 1 0.628323078678451 1 0.884824752807617 experiment 0.743353842643098 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627695 chr16:89627689 synonymous SNV . 0 15 hm5C_associated_SNPs_11980 0 0 1 0 2 RPL13 chr16:89627635 3'AG 89627635 Downstream 55bp
chr16 89627689 89627689 1 + T G rs564290531 89627695 + 89627675 89627715 41 CGCCCCGCGTCGGGTCCCATCCGGCCCATCGTGCGCTGCCC CGCCCCGCGTCGGGGCCCATCCGGCCCATCGTGCGCTGCCC < 41bp 1 0.628323078678451 1 0.884824752807617 experiment 0.743353842643098 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627695 chr16:89627689 synonymous SNV . 0 15 hm5C_associated_SNPs_11980 0 0 1 0 2 RPL13 chr16:89627737 5'GT 89627737 Upstream 49bp
chr16 89627689 89627689 1 + T G rs564290531 89627699 + 89627679 89627719 41 CCGCGTCGGGTCCCATCCGGCCCATCGTGCGCTGCCCCACG CCGCGTCGGGGCCCATCCGGCCCATCGTGCGCTGCCCCACG < 41bp 1 0.304416094435122 1 0.0427840352058411 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627699 chr16:89627689 synonymous SNV . 0 11 hm5C_associated_SNPs_11981 0 0 1 0 2 RPL13 chr16:89627635 3'AG 89627635 Downstream 55bp
chr16 89627689 89627689 1 + T G rs564290531 89627699 + 89627679 89627719 41 CCGCGTCGGGTCCCATCCGGCCCATCGTGCGCTGCCCCACG CCGCGTCGGGGCCCATCCGGCCCATCGTGCGCTGCCCCACG < 41bp 1 0.304416094435122 1 0.0427840352058411 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627699 chr16:89627689 synonymous SNV . 0 11 hm5C_associated_SNPs_11981 0 0 1 0 2 RPL13 chr16:89627737 5'GT 89627737 Upstream 49bp
chr16 89627863 89627863 1 + C T rs575878848 89627848 + 89627828 89627868 41 TGGCCTCAGTCGCGTGATGACATTCTCCGGAATCGCTGTAC TGGCCTCAGTCGCGTGATGACATTCTCCGGAATCGTTGTAC < 41bp 1 0.0668107700752396 1 0.0626578330993652 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human protein_coding chr16:89627848 chr16:89627863 . . 0 36 hm5C_associated_SNPs_11982 0 0 1 0 1 RPL13 chr16:89627776 3'AG 89627776 Downstream 88bp
chr16 89627863 89627863 1 + C T rs575878848 89627852 + 89627832 89627872 41 CTCAGTCGCGTGATGACATTCTCCGGAATCGCTGTACGGCC CTCAGTCGCGTGATGACATTCTCCGGAATCGTTGTACGGCC < 41bp 1 0.575613459800863 1 0.882109761238098 experiment 0.848773080398274 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human protein_coding chr16:89627852 chr16:89627863 . . 0 32 hm5C_associated_SNPs_11983 0 0 1 0 1 RPL13 chr16:89627776 3'AG 89627776 Downstream 88bp
chr16 89627863 89627863 1 + C T rs575878848 89627854 + 89627834 89627874 41 CAGTCGCGTGATGACATTCTCCGGAATCGCTGTACGGCCTT CAGTCGCGTGATGACATTCTCCGGAATCGTTGTACGGCCTT < 41bp 1 0.656365889139631 1 0.90520304441452 experiment 0.687268221720739 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human protein_coding chr16:89627854 chr16:89627863 . . 0 30 hm5C_associated_SNPs_11984 0 0 1 0 1 RPL13 chr16:89627776 3'AG 89627776 Downstream 88bp
chr16 89627863 89627863 1 + C T rs575878848 89627855 + 89627835 89627875 41 AGTCGCGTGATGACATTCTCCGGAATCGCTGTACGGCCTTG AGTCGCGTGATGACATTCTCCGGAATCGTTGTACGGCCTTG < 41bp 1 0.675556097949596 1 0.833850085735321 experiment 0.648887804100809 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human protein_coding chr16:89627855 chr16:89627863 . . 0 29 hm5C_associated_SNPs_11985 0 0 1 0 1 RPL13 chr16:89627776 3'AG 89627776 Downstream 88bp
chr16 89627863 89627863 1 + C T rs575878848 89627861 + 89627841 89627881 41 GTGATGACATTCTCCGGAATCGCTGTACGGCCTTGATGAAA GTGATGACATTCTCCGGAATCGTTGTACGGCCTTGATGAAA < 41bp 1 0.182197597538502 1 0.390704482793808 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human protein_coding chr16:89627861 chr16:89627863 . . 0 23 hm5C_associated_SNPs_11986 0 0 1 0 1 RPL13 chr16:89627776 3'AG 89627776 Downstream 88bp
chr16 89627863 89627863 1 + C T rs575878848 89627868 + 89627848 89627888 41 CATTCTCCGGAATCGCTGTACGGCCTTGATGAAAGCACATT CATTCTCCGGAATCGTTGTACGGCCTTGATGAAAGCACATT < 41bp 1 0.195678273162895 1 0.162464410066605 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human protein_coding chr16:89627868 chr16:89627863 . . 0 16 hm5C_associated_SNPs_11987 0 0 1 0 1 RPL13 chr16:89627776 3'AG 89627776 Downstream 88bp
chr16 89627863 89627863 1 + C T rs575878848 89627871 + 89627851 89627891 41 TCTCCGGAATCGCTGTACGGCCTTGATGAAAGCACATTTGA TCTCCGGAATCGTTGTACGGCCTTGATGAAAGCACATTTGA < 41bp 1 0.0421518732039598 1 0.031143993139267 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human protein_coding chr16:89627871 chr16:89627863 . . 0 13 hm5C_associated_SNPs_11988 0 0 1 0 1 RPL13 chr16:89627776 3'AG 89627776 Downstream 88bp
chr16 89627863 89627863 1 + C T rs575878848 89627872 + 89627852 89627892 41 CTCCGGAATCGCTGTACGGCCTTGATGAAAGCACATTTGAA CTCCGGAATCGTTGTACGGCCTTGATGAAAGCACATTTGAA < 41bp 1 0.25697608277544 1 0.166038542985916 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human protein_coding chr16:89627872 chr16:89627863 . . 0 12 hm5C_associated_SNPs_11989 0 0 1 0 1 RPL13 chr16:89627776 3'AG 89627776 Downstream 88bp
chr16 89627863 89627863 1 + C T rs575878848 89627883 + 89627863 89627903 41 CTGTACGGCCTTGATGAAAGCACATTTGAACCCTTTTCCAT TTGTACGGCCTTGATGAAAGCACATTTGAACCCTTTTCCAT < 41bp 1 0.294599035037289 1 0.052655965089798 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human protein_coding chr16:89627883 chr16:89627863 . . 0 1 hm5C_associated_SNPs_11990 0 0 1 0 1 RPL13 chr16:89627776 3'AG 89627776 Downstream 88bp
chr16 89651199 89651199 1 + C A rs114838488 89651185 + 89651165 89651205 41 CTTGTGCCTCTCCCCAGGACCTCTTCAGCAAGTCCGACCCC CTTGTGCCTCTCCCCAGGACCTCTTCAGCAAGTCAGACCCC < 41bp 1 0.132064898207921 1 0.105902343988419 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89651185 chr16:89651199 synonymous SNV . 0 35 hm5C_associated_SNPs_12013 0 0 1 0 2 CPNE7 chr16:89651182 3'AG 89651182 Downstream 18bp
chr16 89651199 89651199 1 + C A rs114838488 89651185 + 89651165 89651205 41 CTTGTGCCTCTCCCCAGGACCTCTTCAGCAAGTCCGACCCC CTTGTGCCTCTCCCCAGGACCTCTTCAGCAAGTCAGACCCC < 41bp 1 0.132064898207921 1 0.105902343988419 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89651185 chr16:89651199 synonymous SNV . 0 35 hm5C_associated_SNPs_12013 0 0 1 0 2 CPNE7 chr16:89651265 5'GT 89651265 Upstream 67bp
chr16 89759822 89759822 1 + C G rs554811580 89759823 + 89759803 89759843 41 CAGCGGATTTCGGCCTGGCCCGGGCCTATGGTGTCCCAGTA CAGCGGATTTCGGCCTGGCGCGGGCCTATGGTGTCCCAGTA < 41bp 1 0.611623868512049 1 0.896915435791016 experiment 0.776752262975903 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CDK10 ENSG00000185324 CDS Human protein_coding chr16:89759823 chr16:89759822 synonymous SNV . 0 20 hm5C_associated_SNPs_12016 0 0 1 0 2 CDK10 chr16:89759806 3'AG 89759806 Downstream 17bp
chr16 89759822 89759822 1 + C G rs554811580 89759823 + 89759803 89759843 41 CAGCGGATTTCGGCCTGGCCCGGGCCTATGGTGTCCCAGTA CAGCGGATTTCGGCCTGGCGCGGGCCTATGGTGTCCCAGTA < 41bp 1 0.611623868512049 1 0.896915435791016 experiment 0.776752262975903 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CDK10 ENSG00000185324 CDS Human protein_coding chr16:89759823 chr16:89759822 synonymous SNV . 0 20 hm5C_associated_SNPs_12016 0 0 1 0 2 CDK10 chr16:89759875 5'GT 89759875 Upstream 54bp
chr16 89786945 89786945 1 + C A rs565463571 89786937 + 89786917 89786957 41 GAGCCCAGGCTGTGATGCACCGGCTCAGCGAGCGGAGTGGA GAGCCCAGGCTGTGATGCACCGGCTCAGAGAGCGGAGTGGA < 41bp 1 0.449063702647892 1 0.0655342042446136 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VPS9D1 ENSG00000158805 UTR5 Human protein_coding chr16:89786937 chr16:89786945 . . 0 29 hm5C_associated_SNPs_12018 0 0 1 0 1 VPS9D1 chr16:89786990 5'GT 89786990 Upstream 46bp
chr16 89970563 89970563 1 + C G rs191814837 89970558 + 89970538 89970578 41 TGCTCGAGTCTTGCAGTGTGCGGCCCGACGCCAGCGTTTCC TGCTCGAGTCTTGCAGTGTGCGGCCGGACGCCAGCGTTTCC < 41bp 1 0.579986121382223 1 0.465707421302795 experiment 0.840027757235554 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89970558 chr16:89970563 synonymous SNV . 0 26 hm5C_associated_SNPs_12021 0 0 1 0 2 TCF25 chr16:89970526 3'AG 89970526 Downstream 38bp
chr16 89970563 89970563 1 + C G rs191814837 89970558 + 89970538 89970578 41 TGCTCGAGTCTTGCAGTGTGCGGCCCGACGCCAGCGTTTCC TGCTCGAGTCTTGCAGTGTGCGGCCGGACGCCAGCGTTTCC < 41bp 1 0.579986121382223 1 0.465707421302795 experiment 0.840027757235554 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89970558 chr16:89970563 synonymous SNV . 0 26 hm5C_associated_SNPs_12021 0 0 1 0 2 TCF25 chr16:89970613 5'GT 89970613 Upstream 51bp
chr16 89970566 89970566 1 + C G rs73276578 89970558 + 89970538 89970578 41 TGCTCGAGTCTTGCAGTGTGCGGCCCGACGCCAGCGTTTCC TGCTCGAGTCTTGCAGTGTGCGGCCCGAGGCCAGCGTTTCC < 41bp 1 0.481958046524689 1 0.345805585384369 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89970558 chr16:89970566 nonsynonymous SNV 0.002 3 29 hm5C_associated_SNPs_12022 0 0 1 0 2 TCF25 chr16:89970526 3'AG 89970526 Downstream 41bp
chr16 89970566 89970566 1 + C G rs73276578 89970558 + 89970538 89970578 41 TGCTCGAGTCTTGCAGTGTGCGGCCCGACGCCAGCGTTTCC TGCTCGAGTCTTGCAGTGTGCGGCCCGAGGCCAGCGTTTCC < 41bp 1 0.481958046524689 1 0.345805585384369 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89970558 chr16:89970566 nonsynonymous SNV 0.002 3 29 hm5C_associated_SNPs_12022 0 0 1 0 2 TCF25 chr16:89970613 5'GT 89970613 Upstream 48bp
chr17 635964 635964 1 + C G rs143771876 635952 + 635932 635972 41 CTTCGCGCTCTGCACCTGGGCGCTGCGCCGCTCCCAGCCCG CTTCGCGCTCTGCACCTGGGCGCTGCGCCGCTGCCAGCCCG < 41bp 1 0.663914135341863 1 0.430984050035477 experiment 0.672171729316274 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAM57A ENSG00000167695 CDS Human protein_coding chr17:635952 chr17:635964 nonsynonymous SNV 0.016 0 33 hm5C_associated_SNPs_12027 0 0 1 0 1 FAM57A chr17:636009 5'GT 636009 Upstream 46bp
chr17 635971 635971 1 + C G rs146853090 635952 + 635932 635972 41 CTTCGCGCTCTGCACCTGGGCGCTGCGCCGCTCCCAGCCCG CTTCGCGCTCTGCACCTGGGCGCTGCGCCGCTCCCAGCCGG < 41bp 1 0.689039846459098 1 0.301605373620987 experiment 0.621920307081803 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAM57A ENSG00000167695 CDS Human protein_coding chr17:635952 chr17:635971 synonymous SNV . 0 40 hm5C_associated_SNPs_12028 0 0 1 0 1 FAM57A chr17:636009 5'GT 636009 Upstream 39bp
chr17 691357 691357 1 + G A rs145957030 691367 + 691347 691387 41 CTGCAGCAAAGTGTTACTCACCAAAGGTAAGGACATCAAAG CTGCAGCAAAATGTTACTCACCAAAGGTAAGGACATCAAAG < 41bp 1 0.328380707990761 1 0.110429435968399 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRM3 ENSG00000171861 CDS Human protein_coding chr17:691367 chr17:691357 nonsynonymous SNV 0.997 4 11 hm5C_associated_SNPs_12031 0 0 0 0 1 MRM3 chr17:691372 5'GT 691372 Upstream 16bp
chr17 1637458 1637458 1 + G A rs8065251 1637447 + 1637427 1637467 41 GCGTCTTCTTCGTGGGCCAGCTTGAGGCCCCGCAGCACGTG GCGTCTTCTTCGTGGGCCAGCTTGAGGCCCCACAGCACGTG < 41bp 1 0.54691885726793 1 0.324400395154953 experiment 0.90616228546414 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1637447 chr17:1637458 synonymous SNV . 0 32 hm5C_associated_SNPs_12035 1 0 0 0 1 WDR81 chr17:1637510 5'GT 1637510 Upstream 53bp
chr17 1733399 1733399 1 + A G rs5030749 1733413 + 1733393 1733433 41 CGGCCAACTGAGCGAGGGGGCCATTGCGGTGAGGAGGTGCC CGGCCAGCTGAGCGAGGGGGCCATTGCGGTGAGGAGGTGCC < 41bp 1 0.110997803503634 1 0.238330364227295 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPA1 ENSG00000132383 CDS Human protein_coding chr17:1733413 chr17:1733399 synonymous SNV . 0 7 hm5C_associated_SNPs_12038 0 0 1 0 1 RPA1 chr17:1733420 5'GT 1733420 Upstream 22bp
chr17 1747885 1747885 1 + G A rs189644474 1747884 + 1747864 1747904 41 GTTTTCAGCTTTCATGTTGGCGACACAGTTGAACCCTCTCG GTTTTCAGCTTTCATGTTGGCAACACAGTTGAACCCTCTCG < 41bp 1 0.563067205468154 1 0.152354001998901 experiment 0.873865589063693 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPA1 ENSG00000132383 CDS Human protein_coding chr17:1747884 chr17:1747885 synonymous SNV . 0 22 hm5C_associated_SNPs_12039 0 0 1 0 2 RPA1 chr17:1747872 3'AG 1747872 Downstream 14bp
chr17 1747885 1747885 1 + G A rs189644474 1747884 + 1747864 1747904 41 GTTTTCAGCTTTCATGTTGGCGACACAGTTGAACCCTCTCG GTTTTCAGCTTTCATGTTGGCAACACAGTTGAACCCTCTCG < 41bp 1 0.563067205468154 1 0.152354001998901 experiment 0.873865589063693 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPA1 ENSG00000132383 CDS Human protein_coding chr17:1747884 chr17:1747885 synonymous SNV . 0 22 hm5C_associated_SNPs_12039 0 0 1 0 2 RPA1 chr17:1747980 5'GT 1747980 Upstream 96bp
chr17 2266381 2266381 1 + G T rs112097002 2266362 + 2266342 2266382 41 CCCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGGG CCCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGTG < 41bp 1 0.152937678308574 1 0.218549787998199 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2266362 chr17:2266381 nonsynonymous SNV 0.914 4 40 hm5C_associated_SNPs_12043 0 0 1 0 2 SGSM2 chr17:2266283 3'AG 2266283 Downstream 99bp
chr17 2266381 2266381 1 + G T rs112097002 2266362 + 2266342 2266382 41 CCCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGGG CCCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGTG < 41bp 1 0.152937678308574 1 0.218549787998199 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2266362 chr17:2266381 nonsynonymous SNV 0.914 4 40 hm5C_associated_SNPs_12043 0 0 1 0 2 SGSM2 chr17:2266428 5'GT 2266428 Upstream 48bp
chr17 2266381 2266381 1 + G T rs112097002 2266363 + 2266343 2266383 41 CCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGGGT CCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGTGT < 41bp 1 0.510032569020281 1 0.631483852863312 experiment 0.979934861959438 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2266363 chr17:2266381 nonsynonymous SNV 0.914 4 39 hm5C_associated_SNPs_12044 0 0 1 0 2 SGSM2 chr17:2266283 3'AG 2266283 Downstream 99bp
chr17 2266381 2266381 1 + G T rs112097002 2266363 + 2266343 2266383 41 CCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGGGT CCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGTGT < 41bp 1 0.510032569020281 1 0.631483852863312 experiment 0.979934861959438 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2266363 chr17:2266381 nonsynonymous SNV 0.914 4 39 hm5C_associated_SNPs_12044 0 0 1 0 2 SGSM2 chr17:2266428 5'GT 2266428 Upstream 48bp
chr17 2541480 2541480 1 + T C rs533089397 2541477 + 2541457 2541497 41 ATTTTCCCCTGTGTGGAAGACACTTAGTGGCATATTTAAAT ATTTTCCCCTGTGTGGAAGACACCTAGTGGCATATTTAAAT < 41bp 1 0.337807775562646 1 0.0292070508003235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAFAH1B1 ENSG00000007168 UTR5 Human protein_coding chr17:2541477 chr17:2541480 . . 0 24 hm5C_associated_SNPs_12045 0 0 1 12 1 PAFAH1B1 chr17:2541393 3'AG 2541393 Downstream 88bp
chr17 4053204 4053204 1 + T A rs184653285 4053212 + 4053192 4053232 41 CGCATCCAGAGCTTTCGTGACCGGGGACTGTTCTGAAGCAG CGCATCCAGAGCATTCGTGACCGGGGACTGTTCTGAAGCAG < 41bp 1 0.619318073656007 1 0.873537003993988 experiment 0.761363852687986 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CYB5D2 ENSG00000167740 CDS Human protein_coding chr17:4053212 chr17:4053204 synonymous SNV . 0 13 hm5C_associated_SNPs_12059 0 0 0 0 1 CYB5D2 chr17:4053185 3'AG 4053185 Downstream 20bp
chr17 4053224 4053224 1 + C G rs189292607 4053212 + 4053192 4053232 41 CGCATCCAGAGCTTTCGTGACCGGGGACTGTTCTGAAGCAG CGCATCCAGAGCTTTCGTGACCGGGGACTGTTGTGAAGCAG < 41bp 1 0.626808243880949 1 0.876533627510071 experiment 0.746383512238103 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CYB5D2 ENSG00000167740 CDS Human protein_coding chr17:4053212 chr17:4053224 nonsynonymous SNV 0.978 3 33 hm5C_associated_SNPs_12060 0 0 1 0 1 CYB5D2 chr17:4053185 3'AG 4053185 Downstream 40bp
chr17 4435911 4435911 1 + C A rs142224404 4435915 + 4435895 4435935 41 CTAAAAGGGGTCATGCCGACCAGCTCGGGGACCAGCTCAAG CTAAAAGGGGTCATGCAGACCAGCTCGGGGACCAGCTCAAG < 41bp 1 0.332188086585701 1 0.139831364154816 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4435915 chr17:4435911 synonymous SNV . 0 17 hm5C_associated_SNPs_12061 0 0 0 0 2 SPNS2 chr17:4435837 3'AG 4435837 Downstream 75bp
chr17 4435911 4435911 1 + C A rs142224404 4435915 + 4435895 4435935 41 CTAAAAGGGGTCATGCCGACCAGCTCGGGGACCAGCTCAAG CTAAAAGGGGTCATGCAGACCAGCTCGGGGACCAGCTCAAG < 41bp 1 0.332188086585701 1 0.139831364154816 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4435915 chr17:4435911 synonymous SNV . 0 17 hm5C_associated_SNPs_12061 0 0 0 0 2 SPNS2 chr17:4435979 5'GT 4435979 Upstream 69bp
chr17 4712615 4712615 1 + A G rs202012648 4712616 + 4712596 4712636 41 TACCTGGAGAATTACCTCAACCGTCTCTTGACCATGTCTTT TACCTGGAGAATTACCTCAGCCGTCTCTTGACCATGTCTTT < 41bp 1 0.0214350463155222 1 0.28364160656929 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLD2 ENSG00000129219 CDS Human protein_coding chr17:4712616 chr17:4712615 nonsynonymous SNV 0.998 3 20 hm5C_associated_SNPs_12062 0 0 1 0 2 PLD2 chr17:4712593 3'AG 4712593 Downstream 23bp
chr17 4712615 4712615 1 + A G rs202012648 4712616 + 4712596 4712636 41 TACCTGGAGAATTACCTCAACCGTCTCTTGACCATGTCTTT TACCTGGAGAATTACCTCAGCCGTCTCTTGACCATGTCTTT < 41bp 1 0.0214350463155222 1 0.28364160656929 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLD2 ENSG00000129219 CDS Human protein_coding chr17:4712616 chr17:4712615 nonsynonymous SNV 0.998 3 20 hm5C_associated_SNPs_12062 0 0 1 0 2 PLD2 chr17:4712658 5'GT 4712658 Upstream 44bp
chr17 4712617 4712617 1 + C T rs2286672 4712616 + 4712596 4712636 41 TACCTGGAGAATTACCTCAACCGTCTCTTGACCATGTCTTT TACCTGGAGAATTACCTCAACTGTCTCTTGACCATGTCTTT < 41bp 1 0.0659316058374709 1 0.150715529918671 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLD2 ENSG00000129219 CDS Human protein_coding chr17:4712616 chr17:4712617 nonsynonymous SNV 0.995 0 22 hm5C_associated_SNPs_12063 0 0 1 0 2 PLD2 chr17:4712593 3'AG 4712593 Downstream 25bp
chr17 4712617 4712617 1 + C T rs2286672 4712616 + 4712596 4712636 41 TACCTGGAGAATTACCTCAACCGTCTCTTGACCATGTCTTT TACCTGGAGAATTACCTCAACTGTCTCTTGACCATGTCTTT < 41bp 1 0.0659316058374709 1 0.150715529918671 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLD2 ENSG00000129219 CDS Human protein_coding chr17:4712616 chr17:4712617 nonsynonymous SNV 0.995 0 22 hm5C_associated_SNPs_12063 0 0 1 0 2 PLD2 chr17:4712658 5'GT 4712658 Upstream 42bp
chr17 4720033 4720033 1 + C T rs145073180 4720020 + 4720000 4720040 41 TTATCACCAAGGACTGGGTGCAGCTGGACCGGCCTTTCGAA TTATCACCAAGGACTGGGTGCAGCTGGACCGGCTTTTCGAA < 41bp 1 0.31528912000139 1 0.115084201097488 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD2 ENSG00000129219 CDS Human protein_coding chr17:4720020 chr17:4720033 nonsynonymous SNV 0.996 3 34 hm5C_associated_SNPs_12064 0 0 1 0 1 PLD2 chr17:4720041 5'GT 4720041 Upstream 9bp
chr17 4797361 4797361 1 + C T rs56279314 4797353 + 4797333 4797373 41 AGGAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACC AGGAGATCACCGGGACCCAGCCCCCATATGGGGGCGGCACC < 41bp 1 0.0782738964413894 1 0.0588870048522949 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797353 chr17:4797361 synonymous SNV . 0 29 hm5C_associated_SNPs_12065 0 0 1 0 2 MINK1 chr17:4797283 3'AG 4797283 Downstream 79bp
chr17 4797361 4797361 1 + C T rs56279314 4797353 + 4797333 4797373 41 AGGAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACC AGGAGATCACCGGGACCCAGCCCCCATATGGGGGCGGCACC < 41bp 1 0.0782738964413894 1 0.0588870048522949 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797353 chr17:4797361 synonymous SNV . 0 29 hm5C_associated_SNPs_12065 0 0 1 0 2 MINK1 chr17:4797388 5'GT 4797388 Upstream 28bp
chr17 4797361 4797361 1 + C T rs56279314 4797354 + 4797334 4797374 41 GGAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCA GGAGATCACCGGGACCCAGCCCCCATATGGGGGCGGCACCA < 41bp 1 0.491819260510311 1 0.847740769386292 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797354 chr17:4797361 synonymous SNV . 0 28 hm5C_associated_SNPs_12066 0 0 1 0 2 MINK1 chr17:4797283 3'AG 4797283 Downstream 79bp
chr17 4797361 4797361 1 + C T rs56279314 4797354 + 4797334 4797374 41 GGAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCA GGAGATCACCGGGACCCAGCCCCCATATGGGGGCGGCACCA < 41bp 1 0.491819260510311 1 0.847740769386292 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797354 chr17:4797361 synonymous SNV . 0 28 hm5C_associated_SNPs_12066 0 0 1 0 2 MINK1 chr17:4797388 5'GT 4797388 Upstream 28bp
chr17 4797361 4797361 1 + C T rs56279314 4797355 + 4797335 4797375 41 GAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCAT GAGATCACCGGGACCCAGCCCCCATATGGGGGCGGCACCAT < 41bp 1 0.102910196435144 1 0.296115875244141 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797355 chr17:4797361 synonymous SNV . 0 27 hm5C_associated_SNPs_12067 0 0 1 0 2 MINK1 chr17:4797283 3'AG 4797283 Downstream 79bp
chr17 4797361 4797361 1 + C T rs56279314 4797355 + 4797335 4797375 41 GAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCAT GAGATCACCGGGACCCAGCCCCCATATGGGGGCGGCACCAT < 41bp 1 0.102910196435144 1 0.296115875244141 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797355 chr17:4797361 synonymous SNV . 0 27 hm5C_associated_SNPs_12067 0 0 1 0 2 MINK1 chr17:4797388 5'GT 4797388 Upstream 28bp
chr17 4797361 4797361 1 + C T rs56279314 4797356 + 4797336 4797376 41 AGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCATG AGATCACCGGGACCCAGCCCCCATATGGGGGCGGCACCATG < 41bp 1 0.126078716423443 1 0.181475907564163 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797356 chr17:4797361 synonymous SNV . 0 26 hm5C_associated_SNPs_12068 0 0 1 0 2 MINK1 chr17:4797283 3'AG 4797283 Downstream 79bp
chr17 4797361 4797361 1 + C T rs56279314 4797356 + 4797336 4797376 41 AGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCATG AGATCACCGGGACCCAGCCCCCATATGGGGGCGGCACCATG < 41bp 1 0.126078716423443 1 0.181475907564163 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797356 chr17:4797361 synonymous SNV . 0 26 hm5C_associated_SNPs_12068 0 0 1 0 2 MINK1 chr17:4797388 5'GT 4797388 Upstream 28bp
chr17 4797361 4797361 1 + C T rs56279314 4797357 + 4797337 4797377 41 GATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCATGG GATCACCGGGACCCAGCCCCCATATGGGGGCGGCACCATGG < 41bp 1 0.190009236832274 1 0.324761211872101 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797357 chr17:4797361 synonymous SNV . 0 25 hm5C_associated_SNPs_12069 0 0 1 0 2 MINK1 chr17:4797283 3'AG 4797283 Downstream 79bp
chr17 4797361 4797361 1 + C T rs56279314 4797357 + 4797337 4797377 41 GATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCATGG GATCACCGGGACCCAGCCCCCATATGGGGGCGGCACCATGG < 41bp 1 0.190009236832274 1 0.324761211872101 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797357 chr17:4797361 synonymous SNV . 0 25 hm5C_associated_SNPs_12069 0 0 1 0 2 MINK1 chr17:4797388 5'GT 4797388 Upstream 28bp
chr17 4797361 4797361 1 + C T rs56279314 4797367 + 4797347 4797387 41 ACCCAGCCCCCATACGGGGGCGGCACCATGGTGGTCCAGCG ACCCAGCCCCCATATGGGGGCGGCACCATGGTGGTCCAGCG < 41bp 1 0.447329379094267 1 0.248428523540497 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797367 chr17:4797361 synonymous SNV . 0 15 hm5C_associated_SNPs_12070 0 0 1 0 2 MINK1 chr17:4797283 3'AG 4797283 Downstream 79bp
chr17 4797361 4797361 1 + C T rs56279314 4797367 + 4797347 4797387 41 ACCCAGCCCCCATACGGGGGCGGCACCATGGTGGTCCAGCG ACCCAGCCCCCATATGGGGGCGGCACCATGGTGGTCCAGCG < 41bp 1 0.447329379094267 1 0.248428523540497 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797367 chr17:4797361 synonymous SNV . 0 15 hm5C_associated_SNPs_12070 0 0 1 0 2 MINK1 chr17:4797388 5'GT 4797388 Upstream 28bp
chr17 4856376 4856376 1 + A G rs238238 4856386 + 4856366 4856406 41 AACATCAACAATACTCTGGGCCCTGCTCTGCTGCAAAAGGC AACATCAACAGTACTCTGGGCCCTGCTCTGCTGCAAAAGGC < 41bp 1 0.0754226825513369 1 0.122461467981339 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ENO3 ENSG00000108515 CDS Human protein_coding chr17:4856386 chr17:4856376 nonsynonymous SNV 0.997 0 11 hm5C_associated_SNPs_12071 2 1 1 0 1 ENO3 chr17:4856346 3'AG 4856346 Downstream 31bp
chr17 4856390 4856390 1 + G C rs143945974 4856386 + 4856366 4856406 41 AACATCAACAATACTCTGGGCCCTGCTCTGCTGCAAAAGGC AACATCAACAATACTCTGGGCCCTCCTCTGCTGCAAAAGGC < 41bp 1 0.0222364583834786 1 0.0793352127075195 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ENO3 ENSG00000108515 CDS Human protein_coding chr17:4856386 chr17:4856390 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_12072 2 0 1 0 1 ENO3 chr17:4856346 3'AG 4856346 Downstream 45bp
chr17 4856580 4856580 1 + T C rs238239 4856570 + 4856550 4856590 41 CAAACTCACCCTTCCAGAAACTAAGCGTTGTGGATCAAGAA CAAACTCACCCTTCCAGAAACTAAGCGTTGCGGATCAAGAA < 41bp 1 0.19777864546412 1 0.137696832418442 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4856570 chr17:4856580 nonsynonymous SNV 1.000 0 31 hm5C_associated_SNPs_12073 2 0 1 0 1 ENO3 chr17:4856567 3'AG 4856567 Downstream 14bp
chr17 4859364 4859364 1 + C T rs2230257 4859344 + 4859324 4859364 41 ATGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCC ATGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCT < 41bp 1 0.522749245927658 1 0.405509471893311 experiment 0.954501508144684 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859344 chr17:4859364 synonymous SNV . 0 41 hm5C_associated_SNPs_12074 2 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 3bp
chr17 4859364 4859364 1 + C T rs2230257 4859344 + 4859324 4859364 41 ATGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCC ATGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCT < 41bp 1 0.522749245927658 1 0.405509471893311 experiment 0.954501508144684 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859344 chr17:4859364 synonymous SNV . 0 41 hm5C_associated_SNPs_12074 2 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 75bp
chr17 4859364 4859364 1 + C T rs2230257 4859345 + 4859325 4859365 41 TGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCCG TGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCTG < 41bp 1 0.211612381545924 1 0.287932217121124 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859345 chr17:4859364 synonymous SNV . 0 40 hm5C_associated_SNPs_12075 2 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 3bp
chr17 4859364 4859364 1 + C T rs2230257 4859345 + 4859325 4859365 41 TGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCCG TGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCTG < 41bp 1 0.211612381545924 1 0.287932217121124 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859345 chr17:4859364 synonymous SNV . 0 40 hm5C_associated_SNPs_12075 2 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 75bp
chr17 4859364 4859364 1 + C T rs2230257 4859357 + 4859337 4859377 41 CACCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGG CACCAACCCCAAGAGGATTGCCCAGGCTGTTGAGAAGAAGG < 41bp 1 0.231656725366409 1 0.0801554024219513 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859357 chr17:4859364 synonymous SNV . 0 28 hm5C_associated_SNPs_12076 2 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 3bp
chr17 4859364 4859364 1 + C T rs2230257 4859357 + 4859337 4859377 41 CACCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGG CACCAACCCCAAGAGGATTGCCCAGGCTGTTGAGAAGAAGG < 41bp 1 0.231656725366409 1 0.0801554024219513 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859357 chr17:4859364 synonymous SNV . 0 28 hm5C_associated_SNPs_12076 2 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 75bp
chr17 4859364 4859364 1 + C T rs2230257 4859358 + 4859338 4859378 41 ACCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGC ACCAACCCCAAGAGGATTGCCCAGGCTGTTGAGAAGAAGGC < 41bp 1 0.364824947211001 1 0.180778324604034 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859358 chr17:4859364 synonymous SNV . 0 27 hm5C_associated_SNPs_12077 2 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 3bp
chr17 4859364 4859364 1 + C T rs2230257 4859358 + 4859338 4859378 41 ACCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGC ACCAACCCCAAGAGGATTGCCCAGGCTGTTGAGAAGAAGGC < 41bp 1 0.364824947211001 1 0.180778324604034 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859358 chr17:4859364 synonymous SNV . 0 27 hm5C_associated_SNPs_12077 2 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 75bp
chr17 4859364 4859364 1 + C T rs2230257 4859359 + 4859339 4859379 41 CCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCC CCAACCCCAAGAGGATTGCCCAGGCTGTTGAGAAGAAGGCC < 41bp 1 0.482203135197092 1 0.717622756958008 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859359 chr17:4859364 synonymous SNV . 0 26 hm5C_associated_SNPs_12078 2 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 3bp
chr17 4859364 4859364 1 + C T rs2230257 4859359 + 4859339 4859379 41 CCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCC CCAACCCCAAGAGGATTGCCCAGGCTGTTGAGAAGAAGGCC < 41bp 1 0.482203135197092 1 0.717622756958008 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859359 chr17:4859364 synonymous SNV . 0 26 hm5C_associated_SNPs_12078 2 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 75bp
chr17 4859364 4859364 1 + C T rs2230257 4859363 + 4859343 4859383 41 CCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCA CCCCAAGAGGATTGCCCAGGCTGTTGAGAAGAAGGCCTGCA < 41bp 1 0.34103574123648 1 0.107280939817429 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859363 chr17:4859364 synonymous SNV . 0 22 hm5C_associated_SNPs_12079 2 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 3bp
chr17 4859364 4859364 1 + C T rs2230257 4859363 + 4859343 4859383 41 CCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCA CCCCAAGAGGATTGCCCAGGCTGTTGAGAAGAAGGCCTGCA < 41bp 1 0.34103574123648 1 0.107280939817429 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859363 chr17:4859364 synonymous SNV . 0 22 hm5C_associated_SNPs_12079 2 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 75bp
chr17 4859364 4859364 1 + C T rs2230257 4859378 + 4859358 4859398 41 CCAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA CCAGGCTGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA < 41bp 1 0.136367374189168 1 0.0723675191402435 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859378 chr17:4859364 synonymous SNV . 0 7 hm5C_associated_SNPs_12080 2 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 3bp
chr17 4859364 4859364 1 + C T rs2230257 4859378 + 4859358 4859398 41 CCAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA CCAGGCTGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA < 41bp 1 0.136367374189168 1 0.0723675191402435 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859378 chr17:4859364 synonymous SNV . 0 7 hm5C_associated_SNPs_12080 2 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 75bp
chr17 4859364 4859364 1 + C T rs2230257 4859379 + 4859359 4859399 41 CAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAA CAGGCTGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAA < 41bp 1 0.755116594811489 1 0.127392321825027 experiment 0.489766810377023 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859379 chr17:4859364 synonymous SNV . 0 6 hm5C_associated_SNPs_12081 2 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 3bp
chr17 4859364 4859364 1 + C T rs2230257 4859379 + 4859359 4859399 41 CAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAA CAGGCTGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAA < 41bp 1 0.755116594811489 1 0.127392321825027 experiment 0.489766810377023 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859379 chr17:4859364 synonymous SNV . 0 6 hm5C_associated_SNPs_12081 2 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 75bp
chr17 4859364 4859364 1 + C T rs2230257 4859382 + 4859362 4859402 41 GCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGT GCTGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGT < 41bp 1 0.535579486433786 1 0.101447224617004 experiment 0.928841027132428 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859382 chr17:4859364 synonymous SNV . 0 3 hm5C_associated_SNPs_12082 2 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 3bp
chr17 4859364 4859364 1 + C T rs2230257 4859382 + 4859362 4859402 41 GCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGT GCTGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGT < 41bp 1 0.535579486433786 1 0.101447224617004 experiment 0.928841027132428 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859382 chr17:4859364 synonymous SNV . 0 3 hm5C_associated_SNPs_12082 2 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 75bp
chr17 4859365 4859365 1 + G A rs61735456 4859345 + 4859325 4859365 41 TGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCCG TGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCCA < 41bp 1 0.191190264117602 1 0.248302429914474 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859345 chr17:4859365 nonsynonymous SNV 0.997 0 41 hm5C_associated_SNPs_12083 2 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 4bp
chr17 4859365 4859365 1 + G A rs61735456 4859345 + 4859325 4859365 41 TGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCCG TGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCCA < 41bp 1 0.191190264117602 1 0.248302429914474 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859345 chr17:4859365 nonsynonymous SNV 0.997 0 41 hm5C_associated_SNPs_12083 2 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 74bp
chr17 4859365 4859365 1 + G A rs61735456 4859357 + 4859337 4859377 41 CACCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGG CACCAACCCCAAGAGGATTGCCCAGGCCATTGAGAAGAAGG < 41bp 1 0.237399176792241 1 0.0590374171733856 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859357 chr17:4859365 nonsynonymous SNV 0.997 0 29 hm5C_associated_SNPs_12084 2 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 4bp
chr17 4859365 4859365 1 + G A rs61735456 4859357 + 4859337 4859377 41 CACCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGG CACCAACCCCAAGAGGATTGCCCAGGCCATTGAGAAGAAGG < 41bp 1 0.237399176792241 1 0.0590374171733856 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859357 chr17:4859365 nonsynonymous SNV 0.997 0 29 hm5C_associated_SNPs_12084 2 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 74bp
chr17 4859365 4859365 1 + G A rs61735456 4859358 + 4859338 4859378 41 ACCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGC ACCAACCCCAAGAGGATTGCCCAGGCCATTGAGAAGAAGGC < 41bp 1 0.273082618266427 1 0.330487161874771 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859358 chr17:4859365 nonsynonymous SNV 0.997 0 28 hm5C_associated_SNPs_12085 2 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 4bp
chr17 4859365 4859365 1 + G A rs61735456 4859358 + 4859338 4859378 41 ACCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGC ACCAACCCCAAGAGGATTGCCCAGGCCATTGAGAAGAAGGC < 41bp 1 0.273082618266427 1 0.330487161874771 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859358 chr17:4859365 nonsynonymous SNV 0.997 0 28 hm5C_associated_SNPs_12085 2 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 74bp
chr17 4859365 4859365 1 + G A rs61735456 4859359 + 4859339 4859379 41 CCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCC CCAACCCCAAGAGGATTGCCCAGGCCATTGAGAAGAAGGCC < 41bp 1 0.397884466065457 1 0.438932120800018 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859359 chr17:4859365 nonsynonymous SNV 0.997 0 27 hm5C_associated_SNPs_12086 2 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 4bp
chr17 4859365 4859365 1 + G A rs61735456 4859359 + 4859339 4859379 41 CCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCC CCAACCCCAAGAGGATTGCCCAGGCCATTGAGAAGAAGGCC < 41bp 1 0.397884466065457 1 0.438932120800018 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859359 chr17:4859365 nonsynonymous SNV 0.997 0 27 hm5C_associated_SNPs_12086 2 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 74bp
chr17 4859365 4859365 1 + G A rs61735456 4859363 + 4859343 4859383 41 CCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCA CCCCAAGAGGATTGCCCAGGCCATTGAGAAGAAGGCCTGCA < 41bp 1 0.0991913214614416 1 0.0716718733310699 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859363 chr17:4859365 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_12087 2 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 4bp
chr17 4859365 4859365 1 + G A rs61735456 4859363 + 4859343 4859383 41 CCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCA CCCCAAGAGGATTGCCCAGGCCATTGAGAAGAAGGCCTGCA < 41bp 1 0.0991913214614416 1 0.0716718733310699 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859363 chr17:4859365 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_12087 2 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 74bp
chr17 4859365 4859365 1 + G A rs61735456 4859364 + 4859344 4859384 41 CCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCAA CCCAAGAGGATTGCCCAGGCCATTGAGAAGAAGGCCTGCAA < 41bp 1 0.220977662888377 1 0.131863296031952 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859364 chr17:4859365 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_12088 2 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 4bp
chr17 4859365 4859365 1 + G A rs61735456 4859364 + 4859344 4859384 41 CCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCAA CCCAAGAGGATTGCCCAGGCCATTGAGAAGAAGGCCTGCAA < 41bp 1 0.220977662888377 1 0.131863296031952 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859364 chr17:4859365 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_12088 2 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 74bp
chr17 4859365 4859365 1 + G A rs61735456 4859378 + 4859358 4859398 41 CCAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA CCAGGCCATTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA < 41bp 1 0.128329015730899 1 0.0538194179534912 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859378 chr17:4859365 nonsynonymous SNV 0.997 0 8 hm5C_associated_SNPs_12089 2 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 4bp
chr17 4859365 4859365 1 + G A rs61735456 4859378 + 4859358 4859398 41 CCAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA CCAGGCCATTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA < 41bp 1 0.128329015730899 1 0.0538194179534912 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859378 chr17:4859365 nonsynonymous SNV 0.997 0 8 hm5C_associated_SNPs_12089 2 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 74bp
chr17 4859365 4859365 1 + G A rs61735456 4859379 + 4859359 4859399 41 CAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAA CAGGCCATTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAA < 41bp 1 0.756756068797074 1 0.113594084978104 experiment 0.486487862405851 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859379 chr17:4859365 nonsynonymous SNV 0.997 0 7 hm5C_associated_SNPs_12090 2 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 4bp
chr17 4859365 4859365 1 + G A rs61735456 4859379 + 4859359 4859399 41 CAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAA CAGGCCATTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAA < 41bp 1 0.756756068797074 1 0.113594084978104 experiment 0.486487862405851 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859379 chr17:4859365 nonsynonymous SNV 0.997 0 7 hm5C_associated_SNPs_12090 2 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 74bp
chr17 4859365 4859365 1 + G A rs61735456 4859382 + 4859362 4859402 41 GCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGT GCCATTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGT < 41bp 1 0.474435605684977 1 0.132857322692871 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859382 chr17:4859365 nonsynonymous SNV 0.997 0 4 hm5C_associated_SNPs_12091 2 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 4bp
chr17 4859365 4859365 1 + G A rs61735456 4859382 + 4859362 4859402 41 GCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGT GCCATTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGT < 41bp 1 0.474435605684977 1 0.132857322692871 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859382 chr17:4859365 nonsynonymous SNV 0.997 0 4 hm5C_associated_SNPs_12091 2 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 74bp
chr17 4859365 4859365 1 + G A rs61735456 4859385 + 4859365 4859405 41 GTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAA ATTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAA < 41bp 1 0.4558105751811 1 0.0923383235931396 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859385 chr17:4859365 nonsynonymous SNV 0.997 0 1 hm5C_associated_SNPs_12092 2 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 4bp
chr17 4859365 4859365 1 + G A rs61735456 4859385 + 4859365 4859405 41 GTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAA ATTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAA < 41bp 1 0.4558105751811 1 0.0923383235931396 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859385 chr17:4859365 nonsynonymous SNV 0.997 0 1 hm5C_associated_SNPs_12092 2 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 74bp
chr17 4859412 4859412 1 + C T rs114208569 4859392 + 4859372 4859412 41 AGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAGATC AGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAGATT < 41bp 1 0.361308971020338 1 0.195183604955673 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859392 chr17:4859412 synonymous SNV . 0 41 hm5C_associated_SNPs_12093 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 51bp
chr17 4859412 4859412 1 + C T rs114208569 4859392 + 4859372 4859412 41 AGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAGATC AGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAGATT < 41bp 1 0.361308971020338 1 0.195183604955673 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859392 chr17:4859412 synonymous SNV . 0 41 hm5C_associated_SNPs_12093 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 27bp
chr17 4859412 4859412 1 + C T rs114208569 4859403 + 4859383 4859423 41 AACTGTCTGCTGCTGAAGGTCAACCAGATCGGCTCGGTGAC AACTGTCTGCTGCTGAAGGTCAACCAGATTGGCTCGGTGAC < 41bp 1 0.366458154370764 1 0.207307249307632 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859403 chr17:4859412 synonymous SNV . 0 30 hm5C_associated_SNPs_12094 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 51bp
chr17 4859412 4859412 1 + C T rs114208569 4859403 + 4859383 4859423 41 AACTGTCTGCTGCTGAAGGTCAACCAGATCGGCTCGGTGAC AACTGTCTGCTGCTGAAGGTCAACCAGATTGGCTCGGTGAC < 41bp 1 0.366458154370764 1 0.207307249307632 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859403 chr17:4859412 synonymous SNV . 0 30 hm5C_associated_SNPs_12094 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 27bp
chr17 4859412 4859412 1 + C T rs114208569 4859423 + 4859403 4859443 41 CAACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAG CAACCAGATTGGCTCGGTGACCGAATCGATCCAGGCGTGAG < 41bp 1 0.521932091666623 1 0.155814230442047 experiment 0.956135816666754 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859423 chr17:4859412 synonymous SNV . 0 10 hm5C_associated_SNPs_12095 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 51bp
chr17 4859412 4859412 1 + C T rs114208569 4859423 + 4859403 4859443 41 CAACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAG CAACCAGATTGGCTCGGTGACCGAATCGATCCAGGCGTGAG < 41bp 1 0.521932091666623 1 0.155814230442047 experiment 0.956135816666754 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859423 chr17:4859412 synonymous SNV . 0 10 hm5C_associated_SNPs_12095 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 27bp
chr17 4859412 4859412 1 + C T rs114208569 4859424 + 4859404 4859444 41 AACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAGT AACCAGATTGGCTCGGTGACCGAATCGATCCAGGCGTGAGT < 41bp 1 0.391685921481744 1 0.763375580310822 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859424 chr17:4859412 synonymous SNV . 0 9 hm5C_associated_SNPs_12096 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 51bp
chr17 4859412 4859412 1 + C T rs114208569 4859424 + 4859404 4859444 41 AACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAGT AACCAGATTGGCTCGGTGACCGAATCGATCCAGGCGTGAGT < 41bp 1 0.391685921481744 1 0.763375580310822 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859424 chr17:4859412 synonymous SNV . 0 9 hm5C_associated_SNPs_12096 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 27bp
chr17 4859418 4859418 1 + G A rs527864393 4859403 + 4859383 4859423 41 AACTGTCTGCTGCTGAAGGTCAACCAGATCGGCTCGGTGAC AACTGTCTGCTGCTGAAGGTCAACCAGATCGGCTCAGTGAC < 41bp 1 0.403461215931372 1 0.238792032003403 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859403 chr17:4859418 synonymous SNV . 0 36 hm5C_associated_SNPs_12097 1 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 57bp
chr17 4859418 4859418 1 + G A rs527864393 4859403 + 4859383 4859423 41 AACTGTCTGCTGCTGAAGGTCAACCAGATCGGCTCGGTGAC AACTGTCTGCTGCTGAAGGTCAACCAGATCGGCTCAGTGAC < 41bp 1 0.403461215931372 1 0.238792032003403 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859403 chr17:4859418 synonymous SNV . 0 36 hm5C_associated_SNPs_12097 1 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 21bp
chr17 4859418 4859418 1 + G A rs527864393 4859423 + 4859403 4859443 41 CAACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAG CAACCAGATCGGCTCAGTGACCGAATCGATCCAGGCGTGAG < 41bp 1 0.519837916328788 1 0.117825120687485 experiment 0.960324167342425 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859423 chr17:4859418 synonymous SNV . 0 16 hm5C_associated_SNPs_12098 1 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 57bp
chr17 4859418 4859418 1 + G A rs527864393 4859423 + 4859403 4859443 41 CAACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAG CAACCAGATCGGCTCAGTGACCGAATCGATCCAGGCGTGAG < 41bp 1 0.519837916328788 1 0.117825120687485 experiment 0.960324167342425 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859423 chr17:4859418 synonymous SNV . 0 16 hm5C_associated_SNPs_12098 1 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 21bp
chr17 4859418 4859418 1 + G A rs527864393 4859424 + 4859404 4859444 41 AACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAGT AACCAGATCGGCTCAGTGACCGAATCGATCCAGGCGTGAGT < 41bp 1 0.386493772967423 1 0.720782399177551 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859424 chr17:4859418 synonymous SNV . 0 15 hm5C_associated_SNPs_12099 1 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 57bp
chr17 4859418 4859418 1 + G A rs527864393 4859424 + 4859404 4859444 41 AACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAGT AACCAGATCGGCTCAGTGACCGAATCGATCCAGGCGTGAGT < 41bp 1 0.386493772967423 1 0.720782399177551 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859424 chr17:4859418 synonymous SNV . 0 15 hm5C_associated_SNPs_12099 1 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 21bp
chr17 4859889 4859889 1 + T C rs533687145 4859885 + 4859865 4859905 41 CAGGTGCAAACTGGCTCAGTCTAATGGCTGGGGGGTGATGG CAGGTGCAAACTGGCTCAGTCTAACGGCTGGGGGGTGATGG < 41bp 1 0.257780562730096 1 0.0913253426551819 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859885 chr17:4859889 synonymous SNV . 0 25 hm5C_associated_SNPs_12100 0 0 1 0 2 ENO3 chr17:4859868 3'AG 4859868 Downstream 22bp
chr17 4859889 4859889 1 + T C rs533687145 4859885 + 4859865 4859905 41 CAGGTGCAAACTGGCTCAGTCTAATGGCTGGGGGGTGATGG CAGGTGCAAACTGGCTCAGTCTAACGGCTGGGGGGTGATGG < 41bp 1 0.257780562730096 1 0.0913253426551819 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859885 chr17:4859889 synonymous SNV . 0 25 hm5C_associated_SNPs_12100 0 0 1 0 2 ENO3 chr17:4859976 5'GT 4859976 Upstream 88bp
chr17 4905377 4905377 1 + C A rs138692366 4905366 + 4905346 4905386 41 CCCTCCAGCTCTGTGAGGACCTCTTCTCTCGCGTTAGTGAG CCCTCCAGCTCTGTGAGGACCTCTTCTCTCGAGTTAGTGAG < 41bp 1 0.0912866739935913 1 0.0463910102844238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905366 chr17:4905377 synonymous SNV . 0 32 hm5C_associated_SNPs_12103 0 0 1 0 2 KIF1C chr17:4905354 3'AG 4905354 Downstream 24bp
chr17 4905377 4905377 1 + C A rs138692366 4905366 + 4905346 4905386 41 CCCTCCAGCTCTGTGAGGACCTCTTCTCTCGCGTTAGTGAG CCCTCCAGCTCTGTGAGGACCTCTTCTCTCGAGTTAGTGAG < 41bp 1 0.0912866739935913 1 0.0463910102844238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905366 chr17:4905377 synonymous SNV . 0 32 hm5C_associated_SNPs_12103 0 0 1 0 2 KIF1C chr17:4905419 5'GT 4905419 Upstream 43bp
chr17 4923851 4923851 1 + G A rs78356534 4923870 + 4923850 4923890 41 TGGAACGGGAACGAGGGGTCCCCCCACCCCCAGGACCGCCC TAGAACGGGAACGAGGGGTCCCCCCACCCCCAGGACCGCCC < 41bp 1 0.119057585119261 1 0.10008242726326 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4923870 chr17:4923851 synonymous SNV . 0 2 hm5C_associated_SNPs_12104 1 0 1 0 1 KIF1C chr17:4923787 3'AG 4923787 Downstream 65bp
chr17 4926860 4926860 1 + C A rs78970955 4926871 + 4926851 4926891 41 ACCGCATGCCGTCAGCCCGGCCCCCCTCGCCACCACTGTCA ACCGCATGCAGTCAGCCCGGCCCCCCTCGCCACCACTGTCA < 41bp 1 0.063015400054192 1 0.0317761301994324 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926871 chr17:4926860 nonsynonymous SNV 0.002 1 10 hm5C_associated_SNPs_12105 1 0 1 0 1 KIF1C chr17:4926763 3'AG 4926763 Downstream 98bp
chr17 4926860 4926860 1 + C A rs78970955 4926874 + 4926854 4926894 41 GCATGCCGTCAGCCCGGCCCCCCTCGCCACCACTGTCAAGC GCATGCAGTCAGCCCGGCCCCCCTCGCCACCACTGTCAAGC < 41bp 1 0.10179929919069 1 0.0194081366062164 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926874 chr17:4926860 nonsynonymous SNV 0.002 1 7 hm5C_associated_SNPs_12106 1 0 1 0 1 KIF1C chr17:4926763 3'AG 4926763 Downstream 98bp
chr17 4926860 4926860 1 + C A rs78970955 4926880 + 4926860 4926900 41 CGTCAGCCCGGCCCCCCTCGCCACCACTGTCAAGCTGGGAG AGTCAGCCCGGCCCCCCTCGCCACCACTGTCAAGCTGGGAG < 41bp 1 0.101183507081105 1 0.23059493303299 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926880 chr17:4926860 nonsynonymous SNV 0.002 1 1 hm5C_associated_SNPs_12107 1 0 1 0 1 KIF1C chr17:4926763 3'AG 4926763 Downstream 98bp
chr17 5029158 5029158 1 + C T rs578212292 5029155 + 5029135 5029175 41 ATCTCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAA ATCTCGGCTCTCTGCAACTTCCGTCTCCTGGGTTCAAGCAA < 41bp 1 0.113071149019016 1 0.0466055870056152 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029155 chr17:5029158 . . 0 24 hm5C_associated_SNPs_12113 0 0 0 0 2 USP6 chr17:5029116 3'AG 5029116 Downstream 43bp
chr17 5029158 5029158 1 + C T rs578212292 5029155 + 5029135 5029175 41 ATCTCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAA ATCTCGGCTCTCTGCAACTTCCGTCTCCTGGGTTCAAGCAA < 41bp 1 0.113071149019016 1 0.0466055870056152 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029155 chr17:5029158 . . 0 24 hm5C_associated_SNPs_12113 0 0 0 0 2 USP6 chr17:5029233 5'GT 5029233 Upstream 76bp
chr17 5029158 5029158 1 + C T rs578212292 5029156 + 5029136 5029176 41 TCTCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAAT TCTCGGCTCTCTGCAACTTCCGTCTCCTGGGTTCAAGCAAT < 41bp 1 0.213938920848024 1 0.391420364379883 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029156 chr17:5029158 . . 0 23 hm5C_associated_SNPs_12114 0 0 0 0 2 USP6 chr17:5029116 3'AG 5029116 Downstream 43bp
chr17 5029158 5029158 1 + C T rs578212292 5029156 + 5029136 5029176 41 TCTCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAAT TCTCGGCTCTCTGCAACTTCCGTCTCCTGGGTTCAAGCAAT < 41bp 1 0.213938920848024 1 0.391420364379883 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029156 chr17:5029158 . . 0 23 hm5C_associated_SNPs_12114 0 0 0 0 2 USP6 chr17:5029233 5'GT 5029233 Upstream 76bp
chr17 5029158 5029158 1 + C T rs578212292 5029159 + 5029139 5029179 41 CGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTCT CGGCTCTCTGCAACTTCCGTCTCCTGGGTTCAAGCAATTCT < 41bp 1 0.147230807603355 1 0.303456723690033 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029159 chr17:5029158 . . 0 20 hm5C_associated_SNPs_12115 0 0 0 0 2 USP6 chr17:5029116 3'AG 5029116 Downstream 43bp
chr17 5029158 5029158 1 + C T rs578212292 5029159 + 5029139 5029179 41 CGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTCT CGGCTCTCTGCAACTTCCGTCTCCTGGGTTCAAGCAATTCT < 41bp 1 0.147230807603355 1 0.303456723690033 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029159 chr17:5029158 . . 0 20 hm5C_associated_SNPs_12115 0 0 0 0 2 USP6 chr17:5029233 5'GT 5029233 Upstream 76bp
chr17 5029158 5029158 1 + C T rs578212292 5029161 + 5029141 5029181 41 GCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTCTCC GCTCTCTGCAACTTCCGTCTCCTGGGTTCAAGCAATTCTCC < 41bp 1 0.325542505327722 1 0.574341118335724 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029161 chr17:5029158 . . 0 18 hm5C_associated_SNPs_12116 0 0 0 0 2 USP6 chr17:5029116 3'AG 5029116 Downstream 43bp
chr17 5029158 5029158 1 + C T rs578212292 5029161 + 5029141 5029181 41 GCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTCTCC GCTCTCTGCAACTTCCGTCTCCTGGGTTCAAGCAATTCTCC < 41bp 1 0.325542505327722 1 0.574341118335724 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029161 chr17:5029158 . . 0 18 hm5C_associated_SNPs_12116 0 0 0 0 2 USP6 chr17:5029233 5'GT 5029233 Upstream 76bp
chr17 5029158 5029158 1 + C T rs578212292 5029162 + 5029142 5029182 41 CTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTCTCCT CTCTCTGCAACTTCCGTCTCCTGGGTTCAAGCAATTCTCCT < 41bp 1 0.491133404043509 1 0.421631157398224 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029162 chr17:5029158 . . 0 17 hm5C_associated_SNPs_12117 0 0 0 0 2 USP6 chr17:5029116 3'AG 5029116 Downstream 43bp
chr17 5029158 5029158 1 + C T rs578212292 5029162 + 5029142 5029182 41 CTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTCTCCT CTCTCTGCAACTTCCGTCTCCTGGGTTCAAGCAATTCTCCT < 41bp 1 0.491133404043509 1 0.421631157398224 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029162 chr17:5029158 . . 0 17 hm5C_associated_SNPs_12117 0 0 0 0 2 USP6 chr17:5029233 5'GT 5029233 Upstream 76bp
chr17 5029172 5029172 1 + G A rs543618039 5029155 + 5029135 5029175 41 ATCTCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAA ATCTCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAACAA < 41bp 1 0.167303380054781 1 0.0726121366024017 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029155 chr17:5029172 . . 0 38 hm5C_associated_SNPs_12118 0 0 0 0 2 USP6 chr17:5029116 3'AG 5029116 Downstream 57bp
chr17 5029172 5029172 1 + G A rs543618039 5029155 + 5029135 5029175 41 ATCTCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAA ATCTCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAACAA < 41bp 1 0.167303380054781 1 0.0726121366024017 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029155 chr17:5029172 . . 0 38 hm5C_associated_SNPs_12118 0 0 0 0 2 USP6 chr17:5029233 5'GT 5029233 Upstream 62bp
chr17 5029172 5029172 1 + G A rs543618039 5029156 + 5029136 5029176 41 TCTCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAAT TCTCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAACAAT < 41bp 1 0.330301856517018 1 0.766618609428406 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029156 chr17:5029172 . . 0 37 hm5C_associated_SNPs_12119 0 0 0 0 2 USP6 chr17:5029116 3'AG 5029116 Downstream 57bp
chr17 5029172 5029172 1 + G A rs543618039 5029156 + 5029136 5029176 41 TCTCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAAT TCTCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAACAAT < 41bp 1 0.330301856517018 1 0.766618609428406 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029156 chr17:5029172 . . 0 37 hm5C_associated_SNPs_12119 0 0 0 0 2 USP6 chr17:5029233 5'GT 5029233 Upstream 62bp
chr17 5029172 5029172 1 + G A rs543618039 5029158 + 5029138 5029178 41 TCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTC TCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAACAATTC < 41bp 1 0.0621138170575974 1 0.111185073852539 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029158 chr17:5029172 . . 0 35 hm5C_associated_SNPs_12120 0 0 0 0 2 USP6 chr17:5029116 3'AG 5029116 Downstream 57bp
chr17 5029172 5029172 1 + G A rs543618039 5029158 + 5029138 5029178 41 TCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTC TCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAACAATTC < 41bp 1 0.0621138170575974 1 0.111185073852539 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029158 chr17:5029172 . . 0 35 hm5C_associated_SNPs_12120 0 0 0 0 2 USP6 chr17:5029233 5'GT 5029233 Upstream 62bp
chr17 5029172 5029172 1 + G A rs543618039 5029159 + 5029139 5029179 41 CGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTCT CGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAACAATTCT < 41bp 1 0.129768082054089 1 0.529189705848694 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029159 chr17:5029172 . . 0 34 hm5C_associated_SNPs_12121 0 0 0 0 2 USP6 chr17:5029116 3'AG 5029116 Downstream 57bp
chr17 5029172 5029172 1 + G A rs543618039 5029159 + 5029139 5029179 41 CGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTCT CGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAACAATTCT < 41bp 1 0.129768082054089 1 0.529189705848694 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029159 chr17:5029172 . . 0 34 hm5C_associated_SNPs_12121 0 0 0 0 2 USP6 chr17:5029233 5'GT 5029233 Upstream 62bp
chr17 5029172 5029172 1 + G A rs543618039 5029161 + 5029141 5029181 41 GCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTCTCC GCTCTCTGCAACTTCCGCCTCCTGGGTTCAAACAATTCTCC < 41bp 1 0.272392924544397 1 0.628112375736237 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029161 chr17:5029172 . . 0 32 hm5C_associated_SNPs_12122 0 0 0 0 2 USP6 chr17:5029116 3'AG 5029116 Downstream 57bp
chr17 5029172 5029172 1 + G A rs543618039 5029161 + 5029141 5029181 41 GCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTCTCC GCTCTCTGCAACTTCCGCCTCCTGGGTTCAAACAATTCTCC < 41bp 1 0.272392924544397 1 0.628112375736237 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029161 chr17:5029172 . . 0 32 hm5C_associated_SNPs_12122 0 0 0 0 2 USP6 chr17:5029233 5'GT 5029233 Upstream 62bp
chr17 5029172 5029172 1 + G A rs543618039 5029162 + 5029142 5029182 41 CTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTCTCCT CTCTCTGCAACTTCCGCCTCCTGGGTTCAAACAATTCTCCT < 41bp 1 0.46656443890404 1 0.387858629226685 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029162 chr17:5029172 . . 0 31 hm5C_associated_SNPs_12123 0 0 0 0 2 USP6 chr17:5029116 3'AG 5029116 Downstream 57bp
chr17 5029172 5029172 1 + G A rs543618039 5029162 + 5029142 5029182 41 CTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTCTCCT CTCTCTGCAACTTCCGCCTCCTGGGTTCAAACAATTCTCCT < 41bp 1 0.46656443890404 1 0.387858629226685 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029162 chr17:5029172 . . 0 31 hm5C_associated_SNPs_12123 0 0 0 0 2 USP6 chr17:5029233 5'GT 5029233 Upstream 62bp
chr17 5029195 5029195 1 + C T rs141109562 5029194 + 5029174 5029214 41 AATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGG AATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGG < 41bp 1 0.330252877877452 1 0.357229828834534 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029194 chr17:5029195 . . 0 22 hm5C_associated_SNPs_12124 0 0 0 0 2 USP6 chr17:5029116 3'AG 5029116 Downstream 80bp
chr17 5029195 5029195 1 + C T rs141109562 5029194 + 5029174 5029214 41 AATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGG AATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGG < 41bp 1 0.330252877877452 1 0.357229828834534 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029194 chr17:5029195 . . 0 22 hm5C_associated_SNPs_12124 0 0 0 0 2 USP6 chr17:5029233 5'GT 5029233 Upstream 39bp
chr17 5029195 5029195 1 + C T rs141109562 5029202 + 5029182 5029222 41 TGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCATGTGCC TGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCATGTGCC < 41bp 1 0.543844924822558 1 0.626575350761414 experiment 0.912310150354885 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029202 chr17:5029195 . . 0 14 hm5C_associated_SNPs_12125 0 0 0 0 2 USP6 chr17:5029116 3'AG 5029116 Downstream 80bp
chr17 5029195 5029195 1 + C T rs141109562 5029202 + 5029182 5029222 41 TGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCATGTGCC TGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCATGTGCC < 41bp 1 0.543844924822558 1 0.626575350761414 experiment 0.912310150354885 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029202 chr17:5029195 . . 0 14 hm5C_associated_SNPs_12125 0 0 0 0 2 USP6 chr17:5029233 5'GT 5029233 Upstream 39bp
chr17 5286844 5286844 1 + C T rs188091510 5286857 + 5286837 5286877 41 TCCCTACCCTAAAGCGACATCCCAGTAGTGTTTGGAATTTT TCCCTACTCTAAAGCGACATCCCAGTAGTGTTTGGAATTTT < 41bp 1 0.202653721879811 1 0.0796626806259155 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RABEP1 ENSG00000029725 UTR3 Human protein_coding chr17:5286857 chr17:5286844 . . 0 8 hm5C_associated_SNPs_12127 0 0 1 0 1 RABEP1 chr17:5286890 5'GT 5286890 Upstream 47bp
chr17 6012979 6012979 1 + C A rs41314099 6012962 + 6012942 6012982 41 ATTCTCAGGGGCTGGGAATGCTACTGTGCTTACCCTACCCC ATTCTCAGGGGCTGGGAATGCTACTGTGCTTACCCTAACCC < 41bp 1 0.617354673738914 1 0.304381668567657 experiment 0.765290652522172 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WSCD1 ENSG00000179314 CDS Human protein_coding chr17:6012962 chr17:6012979 nonsynonymous SNV 0.994 4 38 hm5C_associated_SNPs_12137 0 0 1 0 1 WSCD1 chr17:6012927 3'AG 6012927 Downstream 53bp
chr17 6347784 6347784 1 + C A rs113798672 6347770 + 6347750 6347790 41 CGGCTGCGGTGGGCGAGGAGCAGCTGTGCTGCGGCTGTGCT CGGCTGCGGTGGGCGAGGAGCAGCTGTGCTGCGGATGTGCT < 41bp 1 0.632907173448141 1 0.739773631095886 experiment 0.734185653103718 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PIMREG ENSG00000129195 UTR5 Human protein_coding chr17:6347770 chr17:6347784 . . 0 35 hm5C_associated_SNPs_12138 0 0 1 0 1 PIMREG chr17:6347808 5'GT 6347808 Upstream 25bp
chr17 6347787 6347787 1 + T C rs111391756 6347770 + 6347750 6347790 41 CGGCTGCGGTGGGCGAGGAGCAGCTGTGCTGCGGCTGTGCT CGGCTGCGGTGGGCGAGGAGCAGCTGTGCTGCGGCTGCGCT < 41bp 1 0.729429139337037 1 0.823102474212646 experiment 0.541141721325927 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PIMREG ENSG00000129195 UTR5 Human protein_coding chr17:6347770 chr17:6347787 . . 0 38 hm5C_associated_SNPs_12139 0 0 1 0 1 PIMREG chr17:6347808 5'GT 6347808 Upstream 22bp
chr17 7155861 7155861 1 + G A rs2521988 7155860 + 7155840 7155880 41 GCCAGAGCAGGGACCGGACGCGAGTTGGAGATGTTGGACTC GCCAGAGCAGGGACCGGACGCAAGTTGGAGATGTTGGACTC < 41bp 1 0.777667553570688 1 0.765186965465546 experiment 0.444664892858625 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7155860 chr17:7155861 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_12140 0 0 1 0 1 ELP5 chr17:7155915 5'GT 7155915 Upstream 55bp
chr17 7254315 7254315 1 + G A rs35985803 7254301 + 7254281 7254321 41 AAAGATGAGGGAGGCTGAAGCGGCCCAGGGGCAGGCAGGTA AAAGATGAGGGAGGCTGAAGCGGCCCAGGGGCAGACAGGTA < 41bp 1 0.50828377763626 1 0.671846926212311 experiment 0.983432444727481 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACAP1 ENSG00000072818 CDS Human protein_coding chr17:7254301 chr17:7254315 nonsynonymous SNV 0.997 0 35 hm5C_associated_SNPs_12146 0 0 0 0 2 ACAP1 chr17:7254269 3'AG 7254269 Downstream 47bp
chr17 7254315 7254315 1 + G A rs35985803 7254301 + 7254281 7254321 41 AAAGATGAGGGAGGCTGAAGCGGCCCAGGGGCAGGCAGGTA AAAGATGAGGGAGGCTGAAGCGGCCCAGGGGCAGACAGGTA < 41bp 1 0.50828377763626 1 0.671846926212311 experiment 0.983432444727481 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACAP1 ENSG00000072818 CDS Human protein_coding chr17:7254301 chr17:7254315 nonsynonymous SNV 0.997 0 35 hm5C_associated_SNPs_12146 0 0 0 0 2 ACAP1 chr17:7254318 5'GT 7254318 Upstream 4bp
chr17 7338977 7338977 1 + C T rs371158050 7338984 + 7338964 7339004 41 CAGTTCATGGGGGCGGGGACCTGCCTATGAGAAAAGGGCCA CAGTTCATGGGGGTGGGGACCTGCCTATGAGAAAAGGGCCA < 41bp 1 0.293231882342709 1 0.144939631223679 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TMEM102 ENSG00000262880 ncRNA_intronic Human processed_transcript chr17:7338984 chr17:7338977 . . 0 14 hm5C_associated_SNPs_12147 0 0 0 0 1 TMEM102 chr17:7339015 5'GT 7339015 Upstream 39bp
chr17 7463197 7463197 1 + C G rs138604224 7463183 + 7463163 7463203 41 AGCAGCACTCTGTCCTGCACCTGGTTCCCATTAACGCCACC AGCAGCACTCTGTCCTGCACCTGGTTCCCATTAAGGCCACC < 41bp 1 0.395263210855784 1 0.237437576055527 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNFSF12-TNFSF13;TNFSF13 ENSG00000161955;ENSG00000239697;ENSG00000248871 CDS Human other chr17:7463183 chr17:7463197 nonsynonymous SNV 0.967 2 35 hm5C_associated_SNPs_12150 0 0 0 0 3 TNFSF12-TNFSF13;TNFSF13;TNFSF13 chr17:7463163 3'AG 7463163 Downstream 35bp
chr17 7463197 7463197 1 + C G rs138604224 7463183 + 7463163 7463203 41 AGCAGCACTCTGTCCTGCACCTGGTTCCCATTAACGCCACC AGCAGCACTCTGTCCTGCACCTGGTTCCCATTAAGGCCACC < 41bp 1 0.395263210855784 1 0.237437576055527 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNFSF12-TNFSF13;TNFSF13 ENSG00000161955;ENSG00000239697;ENSG00000248871 CDS Human other chr17:7463183 chr17:7463197 nonsynonymous SNV 0.967 2 35 hm5C_associated_SNPs_12150 0 0 0 0 3 TNFSF12-TNFSF13;TNFSF13 chr17:7463165 3'AG 7463165 Downstream 33bp
chr17 7463197 7463197 1 + C G rs138604224 7463183 + 7463163 7463203 41 AGCAGCACTCTGTCCTGCACCTGGTTCCCATTAACGCCACC AGCAGCACTCTGTCCTGCACCTGGTTCCCATTAAGGCCACC < 41bp 1 0.395263210855784 1 0.237437576055527 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNFSF12-TNFSF13;TNFSF13 ENSG00000161955;ENSG00000239697;ENSG00000248871 CDS Human other chr17:7463183 chr17:7463197 nonsynonymous SNV 0.967 2 35 hm5C_associated_SNPs_12150 0 0 0 0 3 TNFSF12-TNFSF13;TNFSF13 chr17:7463168 3'AG 7463168 Downstream 30bp
chr17 7478498 7478498 1 + G A rs7358 7478497 + 7478477 7478517 41 AACGGCCACATTTGCCATATCGATTCTGCAGCAGATTGAAT AACGGCCACATTTGCCATATCAATTCTGCAGCAGATTGAAT < 41bp 1 0.077942211616954 1 0.121469557285309 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7478497 chr17:7478498 synonymous SNV . 0 22 hm5C_associated_SNPs_12154 0 0 1 0 2 EIF4A1 chr17:7478437 3'AG 7478437 Downstream 62bp
chr17 7478498 7478498 1 + G A rs7358 7478497 + 7478477 7478517 41 AACGGCCACATTTGCCATATCGATTCTGCAGCAGATTGAAT AACGGCCACATTTGCCATATCAATTCTGCAGCAGATTGAAT < 41bp 1 0.077942211616954 1 0.121469557285309 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7478497 chr17:7478498 synonymous SNV . 0 22 hm5C_associated_SNPs_12154 0 0 1 0 2 EIF4A1 chr17:7478576 5'GT 7478576 Upstream 79bp
chr17 7479892 7479892 1 + C T rs11078698 7479886 + 7479866 7479906 41 GGAGACTACATGGGCGCCTCCTGTCACGCCTGTATCGGGGG GGAGACTACATGGGCGCCTCCTGTCATGCCTGTATCGGGGG < 41bp 1 0.230524458858828 1 0.364945232868195 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479886 chr17:7479892 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_12155 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 51bp
chr17 7479892 7479892 1 + C T rs11078698 7479895 + 7479875 7479915 41 ATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAACGT ATGGGCGCCTCCTGTCATGCCTGTATCGGGGGCACCAACGT < 41bp 1 0.647387145748961 1 0.243674218654633 experiment 0.705225708502077 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479895 chr17:7479892 nonsynonymous SNV . 0 18 hm5C_associated_SNPs_12156 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 51bp
chr17 7479892 7479892 1 + C T rs11078698 7479907 + 7479887 7479927 41 TGTCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGT TGTCATGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGT < 41bp 1 0.54097175086047 1 0.2534299492836 experiment 0.91805649827906 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479907 chr17:7479892 nonsynonymous SNV . 0 6 hm5C_associated_SNPs_12157 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 51bp
chr17 7479892 7479892 1 + C T rs11078698 7479909 + 7479889 7479929 41 TCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGC TCATGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGC < 41bp 1 0.125089241628519 1 0.154397666454315 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479909 chr17:7479892 nonsynonymous SNV . 0 4 hm5C_associated_SNPs_12158 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 51bp
chr17 7479892 7479892 1 + C T rs11078698 7479910 + 7479890 7479930 41 CACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGCA CATGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGCA < 41bp 1 0.474531932660383 1 0.294010400772095 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479910 chr17:7479892 nonsynonymous SNV . 0 3 hm5C_associated_SNPs_12159 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 51bp
chr17 7479901 7479901 1 + C A rs550885428 7479886 + 7479866 7479906 41 GGAGACTACATGGGCGCCTCCTGTCACGCCTGTATCGGGGG GGAGACTACATGGGCGCCTCCTGTCACGCCTGTATAGGGGG < 41bp 1 0.153109004554392 1 0.353808522224426 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479886 chr17:7479901 synonymous SNV . 0 36 hm5C_associated_SNPs_12160 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 60bp
chr17 7479901 7479901 1 + C A rs550885428 7479892 + 7479872 7479912 41 TACATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAA TACATGGGCGCCTCCTGTCACGCCTGTATAGGGGGCACCAA < 41bp 1 0.66355302977867 1 0.0794467329978943 experiment 0.67289394044266 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479892 chr17:7479901 synonymous SNV . 0 30 hm5C_associated_SNPs_12161 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 60bp
chr17 7479901 7479901 1 + C A rs550885428 7479895 + 7479875 7479915 41 ATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAACGT ATGGGCGCCTCCTGTCACGCCTGTATAGGGGGCACCAACGT < 41bp 1 0.583506005264586 1 0.538746118545532 experiment 0.832987989470829 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479895 chr17:7479901 synonymous SNV . 0 27 hm5C_associated_SNPs_12162 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 60bp
chr17 7479901 7479901 1 + C A rs550885428 7479907 + 7479887 7479927 41 TGTCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGT TGTCACGCCTGTATAGGGGGCACCAACGTGCGTGCTGAGGT < 41bp 1 0.51092468075184 1 0.137567311525345 experiment 0.978150638496319 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479907 chr17:7479901 synonymous SNV . 0 15 hm5C_associated_SNPs_12163 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 60bp
chr17 7479901 7479901 1 + C A rs550885428 7479909 + 7479889 7479929 41 TCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGC TCACGCCTGTATAGGGGGCACCAACGTGCGTGCTGAGGTGC < 41bp 1 0.10839848606202 1 0.171687066555023 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479909 chr17:7479901 synonymous SNV . 0 13 hm5C_associated_SNPs_12164 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 60bp
chr17 7479901 7479901 1 + C A rs550885428 7479910 + 7479890 7479930 41 CACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGCA CACGCCTGTATAGGGGGCACCAACGTGCGTGCTGAGGTGCA < 41bp 1 0.401616295212454 1 0.175630241632462 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479910 chr17:7479901 synonymous SNV . 0 12 hm5C_associated_SNPs_12165 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 60bp
chr17 7480000 7480000 1 + G A rs61730297 7480007 + 7479987 7480027 41 ATATGCTTAACCGGAGATACCTGTGTGAGTAATTCGGTTCT ATATGCTTAACCGAAGATACCTGTGTGAGTAATTCGGTTCT < 41bp 1 0.42287279058511 1 0.0482604205608368 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7480007 chr17:7480000 synonymous SNV . 0 14 hm5C_associated_SNPs_12166 0 0 1 0 1 EIF4A1 chr17:7480010 5'GT 7480010 Upstream 11bp
chr17 7484049 7484049 1 + C T rs566165376 7484032 + 7484012 7484052 41 TCCTCTTCGCCCCACAGGACCTCCAGCAGAAGGTTGTCTAC TCCTCTTCGCCCCACAGGACCTCCAGCAGAAGGTTGTTTAC < 41bp 1 0.674737148683402 1 0.839459598064423 experiment 0.650525702633197 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CD68 ENSG00000129226 CDS Human protein_coding chr17:7484032 chr17:7484049 synonymous SNV . 0 38 hm5C_associated_SNPs_12180 0 0 0 0 2 CD68 chr17:7484029 3'AG 7484029 Downstream 21bp
chr17 7484049 7484049 1 + C T rs566165376 7484032 + 7484012 7484052 41 TCCTCTTCGCCCCACAGGACCTCCAGCAGAAGGTTGTCTAC TCCTCTTCGCCCCACAGGACCTCCAGCAGAAGGTTGTTTAC < 41bp 1 0.674737148683402 1 0.839459598064423 experiment 0.650525702633197 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CD68 ENSG00000129226 CDS Human protein_coding chr17:7484032 chr17:7484049 synonymous SNV . 0 38 hm5C_associated_SNPs_12180 0 0 0 0 2 CD68 chr17:7484101 5'GT 7484101 Upstream 53bp
chr17 7748734 7748734 1 + C T rs57293991 7748744 + 7748724 7748764 41 GGCAGGGGGCCGTGCCCAATCTCCAGGGCTCCTGGGGCCAC GGCAGGGGGCTGTGCCCAATCTCCAGGGCTCCTGGGGCCAC < 41bp 1 0.778863025570263 1 0.970799088478088 experiment 0.442273948859473 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control KDM6B ENSG00000132510 UTR5 Human protein_coding chr17:7748744 chr17:7748734 . . 0 11 hm5C_associated_SNPs_12183 0 0 1 0 1 KDM6B chr17:7748774 5'GT 7748774 Upstream 41bp
chr17 7750232 7750232 1 + T C rs11078709 7750213 + 7750193 7750233 41 ACCACCACCACCACCACCACCACCCCTGCCTGGCCTGGCTA ACCACCACCACCACCACCACCACCCCTGCCTGGCCTGGCCA < 41bp 1 0.105498686533477 1 0.39609768986702 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7750213 chr17:7750232 synonymous SNV . 0 40 hm5C_associated_SNPs_12184 0 0 1 0 1 KDM6B chr17:7750137 3'AG 7750137 Downstream 96bp
chr17 7750232 7750232 1 + T C rs11078709 7750235 + 7750215 7750255 41 CCCCTGCCTGGCCTGGCTACCAGCCCCCCATTTCAGCTAAC CCCCTGCCTGGCCTGGCCACCAGCCCCCCATTTCAGCTAAC < 41bp 1 0.13993992360774 1 0.792651772499084 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7750235 chr17:7750232 synonymous SNV . 0 18 hm5C_associated_SNPs_12185 0 0 1 0 1 KDM6B chr17:7750137 3'AG 7750137 Downstream 96bp
chr17 7810512 7810512 1 + C G rs139484082 7810504 + 7810484 7810524 41 ACCTCTTGAGAAGGAGGAAGCTGAAAACCAGGAGGAAAAGC ACCTCTTGAGAAGGAGGAAGCTGAAAACGAGGAGGAAAAGC < 41bp 1 0.502828976921896 1 0.556456387042999 experiment 0.994342046156208 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810504 chr17:7810512 nonsynonymous SNV 0.910 1 29 hm5C_associated_SNPs_12187 0 0 1 0 2 CHD3 chr17:7810444 3'AG 7810444 Downstream 69bp
chr17 7810512 7810512 1 + C G rs139484082 7810504 + 7810484 7810524 41 ACCTCTTGAGAAGGAGGAAGCTGAAAACCAGGAGGAAAAGC ACCTCTTGAGAAGGAGGAAGCTGAAAACGAGGAGGAAAAGC < 41bp 1 0.502828976921896 1 0.556456387042999 experiment 0.994342046156208 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810504 chr17:7810512 nonsynonymous SNV 0.910 1 29 hm5C_associated_SNPs_12187 0 0 1 0 2 CHD3 chr17:7810565 5'GT 7810565 Upstream 54bp
chr17 7810512 7810512 1 + C G rs139484082 7810511 + 7810491 7810531 41 GAGAAGGAGGAAGCTGAAAACCAGGAGGAAAAGCCAGAGAA GAGAAGGAGGAAGCTGAAAACGAGGAGGAAAAGCCAGAGAA < 41bp 1 0.787726329018318 1 0.820025682449341 experiment 0.424547341963365 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810511 chr17:7810512 nonsynonymous SNV 0.910 1 22 hm5C_associated_SNPs_12188 0 0 1 0 2 CHD3 chr17:7810444 3'AG 7810444 Downstream 69bp
chr17 7810512 7810512 1 + C G rs139484082 7810511 + 7810491 7810531 41 GAGAAGGAGGAAGCTGAAAACCAGGAGGAAAAGCCAGAGAA GAGAAGGAGGAAGCTGAAAACGAGGAGGAAAAGCCAGAGAA < 41bp 1 0.787726329018318 1 0.820025682449341 experiment 0.424547341963365 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810511 chr17:7810512 nonsynonymous SNV 0.910 1 22 hm5C_associated_SNPs_12188 0 0 1 0 2 CHD3 chr17:7810565 5'GT 7810565 Upstream 54bp
chr17 7810512 7810512 1 + C G rs139484082 7810524 + 7810504 7810544 41 CTGAAAACCAGGAGGAAAAGCCAGAGAAGAACAGCAGAATT CTGAAAACGAGGAGGAAAAGCCAGAGAAGAACAGCAGAATT < 41bp 1 0.544301378798104 1 0.645491898059845 experiment 0.911397242403792 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810524 chr17:7810512 nonsynonymous SNV 0.910 1 9 hm5C_associated_SNPs_12189 0 0 1 0 2 CHD3 chr17:7810444 3'AG 7810444 Downstream 69bp
chr17 7810512 7810512 1 + C G rs139484082 7810524 + 7810504 7810544 41 CTGAAAACCAGGAGGAAAAGCCAGAGAAGAACAGCAGAATT CTGAAAACGAGGAGGAAAAGCCAGAGAAGAACAGCAGAATT < 41bp 1 0.544301378798104 1 0.645491898059845 experiment 0.911397242403792 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810524 chr17:7810512 nonsynonymous SNV 0.910 1 9 hm5C_associated_SNPs_12189 0 0 1 0 2 CHD3 chr17:7810565 5'GT 7810565 Upstream 54bp
chr17 7810512 7810512 1 + C G rs139484082 7810525 + 7810505 7810545 41 TGAAAACCAGGAGGAAAAGCCAGAGAAGAACAGCAGAATTG TGAAAACGAGGAGGAAAAGCCAGAGAAGAACAGCAGAATTG < 41bp 1 0.50119370178156 1 0.745246887207031 experiment 0.99761259643688 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810525 chr17:7810512 nonsynonymous SNV 0.910 1 8 hm5C_associated_SNPs_12190 0 0 1 0 2 CHD3 chr17:7810444 3'AG 7810444 Downstream 69bp
chr17 7810512 7810512 1 + C G rs139484082 7810525 + 7810505 7810545 41 TGAAAACCAGGAGGAAAAGCCAGAGAAGAACAGCAGAATTG TGAAAACGAGGAGGAAAAGCCAGAGAAGAACAGCAGAATTG < 41bp 1 0.50119370178156 1 0.745246887207031 experiment 0.99761259643688 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810525 chr17:7810512 nonsynonymous SNV 0.910 1 8 hm5C_associated_SNPs_12190 0 0 1 0 2 CHD3 chr17:7810565 5'GT 7810565 Upstream 54bp
chr17 7838371 7838371 1 + C G rs144838552 7838362 + 7838342 7838382 41 CAGCCCAAGCCCTGGAGGAGCTGTTTCCCCGCTACACCAGC CAGCCCAAGCCCTGGAGGAGCTGTTTCCCGGCTACACCAGC < 41bp 1 0.195829139953032 1 0.10207998752594 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNTROB ENSG00000170037 CDS Human protein_coding chr17:7838362 chr17:7838371 nonsynonymous SNV 0.998 4 30 hm5C_associated_SNPs_12191 0 0 1 0 2 CNTROB chr17:7838307 3'AG 7838307 Downstream 65bp
chr17 7838371 7838371 1 + C G rs144838552 7838362 + 7838342 7838382 41 CAGCCCAAGCCCTGGAGGAGCTGTTTCCCCGCTACACCAGC CAGCCCAAGCCCTGGAGGAGCTGTTTCCCGGCTACACCAGC < 41bp 1 0.195829139953032 1 0.10207998752594 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNTROB ENSG00000170037 CDS Human protein_coding chr17:7838362 chr17:7838371 nonsynonymous SNV 0.998 4 30 hm5C_associated_SNPs_12191 0 0 1 0 2 CNTROB chr17:7838463 5'GT 7838463 Upstream 93bp
chr17 7838372 7838372 1 + G A rs535452353 7838362 + 7838342 7838382 41 CAGCCCAAGCCCTGGAGGAGCTGTTTCCCCGCTACACCAGC CAGCCCAAGCCCTGGAGGAGCTGTTTCCCCACTACACCAGC < 41bp 1 0.227753852307055 1 0.155037343502045 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNTROB ENSG00000170037 CDS Human protein_coding chr17:7838362 chr17:7838372 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_12192 0 0 1 0 2 CNTROB chr17:7838307 3'AG 7838307 Downstream 66bp
chr17 7838372 7838372 1 + G A rs535452353 7838362 + 7838342 7838382 41 CAGCCCAAGCCCTGGAGGAGCTGTTTCCCCGCTACACCAGC CAGCCCAAGCCCTGGAGGAGCTGTTTCCCCACTACACCAGC < 41bp 1 0.227753852307055 1 0.155037343502045 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNTROB ENSG00000170037 CDS Human protein_coding chr17:7838362 chr17:7838372 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_12192 0 0 1 0 2 CNTROB chr17:7838463 5'GT 7838463 Upstream 92bp
chr17 15907568 15907568 1 + G A rs58517927 15907552 + 15907532 15907572 41 TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGCGCAGA TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGCACAGA < 41bp 1 0.123747155104089 1 0.0638697445392609 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15907552 chr17:15907568 synonymous SNV . 0 37 hm5C_associated_SNPs_12269 2 0 1 2 2 TTC19 chr17:15907515 3'AG 15907515 Downstream 54bp
chr17 15907568 15907568 1 + G A rs58517927 15907552 + 15907532 15907572 41 TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGCGCAGA TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGCACAGA < 41bp 1 0.123747155104089 1 0.0638697445392609 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15907552 chr17:15907568 synonymous SNV . 0 37 hm5C_associated_SNPs_12269 2 0 1 2 2 TTC19 chr17:15907576 5'GT 15907576 Upstream 9bp
chr17 15929920 15929920 1 + A C rs143293913 15929902 + 15929882 15929922 41 CTACCCTGGATGCACAGGGCCGCTTTGATGAGGCCTATATT CTACCCTGGATGCACAGGGCCGCTTTGATGAGGCCTATCTT < 41bp 1 0.217238720764789 1 0.0309081375598907 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15929902 chr17:15929920 nonsynonymous SNV 0.985 1 39 hm5C_associated_SNPs_12270 0 0 1 1 2 TTC19 chr17:15929854 3'AG 15929854 Downstream 67bp
chr17 15929920 15929920 1 + A C rs143293913 15929902 + 15929882 15929922 41 CTACCCTGGATGCACAGGGCCGCTTTGATGAGGCCTATATT CTACCCTGGATGCACAGGGCCGCTTTGATGAGGCCTATCTT < 41bp 1 0.217238720764789 1 0.0309081375598907 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15929902 chr17:15929920 nonsynonymous SNV 0.985 1 39 hm5C_associated_SNPs_12270 0 0 1 1 2 TTC19 chr17:15930016 5'GT 15930016 Upstream 97bp
chr17 16285404 16285404 1 + C T rs9908960 16285385 + 16285365 16285405 41 GCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAACATCC GCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAACATTC < 41bp 1 0.274178147879654 1 0.121844112873077 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBB ENSG00000170315 CDS Human protein_coding chr17:16285385 chr17:16285404 synonymous SNV . 0 40 hm5C_associated_SNPs_12273 0 0 1 0 1 UBB chr17:16285444 5'GT 16285444 Upstream 41bp
chr17 16332191 16332191 1 + G T rs185814710 16332211 + 16332191 16332231 41 GTACCTGCCCCTGCTTGTGTCTGCGCTGGTGCTGGGCTGGC TTACCTGCCCCTGCTTGTGTCTGCGCTGGTGCTGGGCTGGC < 41bp 1 0.633515406579643 1 0.563394546508789 experiment 0.732969186840714 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16332211 chr17:16332191 nonsynonymous SNV 0.979 2 1 hm5C_associated_SNPs_12274 0 0 0 0 1 TRPV2 chr17:16332131 3'AG 16332131 Downstream 61bp
chr17 16342718 16342718 1 + G A rs61998213 16342711 + 16342691 16342731 41 CGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTA CGGCCCACAGTGGGGGTGTGCAAACCCAAGAGAACTGGGTA < 41bp 1 0.366851249299017 1 0.250647574663162 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342711 chr17:16342718 . . 0 28 hm5C_associated_SNPs_12275 0 0 1 0 2 LRRC75A-AS1 chr17:16342641 3'AG 16342641 Downstream 78bp
chr17 16342718 16342718 1 + G A rs61998213 16342711 + 16342691 16342731 41 CGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTA CGGCCCACAGTGGGGGTGTGCAAACCCAAGAGAACTGGGTA < 41bp 1 0.366851249299017 1 0.250647574663162 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342711 chr17:16342718 . . 0 28 hm5C_associated_SNPs_12275 0 0 1 0 2 LRRC75A-AS1 chr17:16342728 5'GT 16342728 Upstream 11bp
chr17 16342718 16342718 1 + G A rs61998213 16342716 + 16342696 16342736 41 CACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTAAGTTG CACAGTGGGGGTGTGCAAACCCAAGAGAACTGGGTAAGTTG < 41bp 1 0.49336985574485 1 0.333793818950653 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342716 chr17:16342718 . . 0 23 hm5C_associated_SNPs_12276 0 0 1 0 2 LRRC75A-AS1 chr17:16342641 3'AG 16342641 Downstream 78bp
chr17 16342718 16342718 1 + G A rs61998213 16342716 + 16342696 16342736 41 CACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTAAGTTG CACAGTGGGGGTGTGCAAACCCAAGAGAACTGGGTAAGTTG < 41bp 1 0.49336985574485 1 0.333793818950653 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342716 chr17:16342718 . . 0 23 hm5C_associated_SNPs_12276 0 0 1 0 2 LRRC75A-AS1 chr17:16342728 5'GT 16342728 Upstream 11bp
chr17 16342890 16342890 1 + C A rs374801799 16342874 + 16342854 16342894 41 GAAGCGATAACTGACGACGTCTAATGTCTATCTGACCGCAG GAAGCGATAACTGACGACGTCTAATGTCTATCTGACAGCAG < 41bp 1 0.20986520351612 1 0.0940206944942474 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342874 chr17:16342890 . . 0 37 hm5C_associated_SNPs_12278 0 0 1 0 1 LRRC75A-AS1;SNORD49B chr17:16342842 3'AG 16342842 Downstream 49bp
chr17 16342890 16342890 1 + C A rs374801799 16342881 + 16342861 16342901 41 TAACTGACGACGTCTAATGTCTATCTGACCGCAGTCGCTGA TAACTGACGACGTCTAATGTCTATCTGACAGCAGTCGCTGA < 41bp 1 0.12124582143659 1 0.0559397637844086 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342881 chr17:16342890 . . 0 30 hm5C_associated_SNPs_12279 0 0 1 0 1 LRRC75A-AS1;SNORD49B chr17:16342842 3'AG 16342842 Downstream 49bp
chr17 17061758 17061758 1 + G A rs569074758 17061773 + 17061753 17061793 41 CCAGAGGAAAAAAACAAGAGCAGCTGCTCTTTTGAGACCTG CCAGAAGAAAAAAACAAGAGCAGCTGCTCTTTTGAGACCTG < 41bp 1 0.0989120500965927 1 0.511709213256836 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17061773 chr17:17061758 synonymous SNV . 0 6 hm5C_associated_SNPs_12282 0 0 0 0 1 MPRIP chr17:17061746 3'AG 17061746 Downstream 13bp
chr17 17080665 17080665 1 + C A rs200762157 17080663 + 17080643 17080683 41 TCAGCAGGTTGAAGGAGCAGCTCAAGGCTGCAACGGAAGCA TCAGCAGGTTGAAGGAGCAGCTAAAGGCTGCAACGGAAGCA < 41bp 1 0.371074407357981 1 0.228254050016403 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17080663 chr17:17080665 synonymous SNV . 0 23 hm5C_associated_SNPs_12284 0 0 1 0 1 MPRIP chr17:17080726 5'GT 17080726 Upstream 62bp
chr17 17080665 17080665 1 + C A rs200762157 17080670 + 17080650 17080690 41 GTTGAAGGAGCAGCTCAAGGCTGCAACGGAAGCACTGGGGG GTTGAAGGAGCAGCTAAAGGCTGCAACGGAAGCACTGGGGG < 41bp 1 0.754618754727968 1 0.789975643157959 experiment 0.490762490544065 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17080670 chr17:17080665 synonymous SNV . 0 16 hm5C_associated_SNPs_12285 0 0 1 0 1 MPRIP chr17:17080726 5'GT 17080726 Upstream 62bp
chr17 17080665 17080665 1 + C A rs200762157 17080673 + 17080653 17080693 41 GAAGGAGCAGCTCAAGGCTGCAACGGAAGCACTGGGGGAGA GAAGGAGCAGCTAAAGGCTGCAACGGAAGCACTGGGGGAGA < 41bp 1 0.254706413608349 1 0.250723600387573 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17080673 chr17:17080665 synonymous SNV . 0 13 hm5C_associated_SNPs_12286 0 0 1 0 1 MPRIP chr17:17080726 5'GT 17080726 Upstream 62bp
chr17 18057167 18057167 1 + A T rs712270 18057159 + 18057139 18057179 41 CTGCACCGCCTCATCAATCCCAACTTCTACGGCTATCAGGA CTGCACCGCCTCATCAATCCCAACTTCTTCGGCTATCAGGA < 41bp 1 0.128043754242078 1 0.231480181217194 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MYO15A ENSG00000091536 CDS Human protein_coding chr17:18057159 chr17:18057167 nonsynonymous SNV 0.994 3 29 hm5C_associated_SNPs_12293 2 0 0 0 1 MYO15A chr17:18057210 5'GT 18057210 Upstream 44bp
chr17 18061142 18061142 1 + C T rs200926400 18061139 + 18061119 18061159 41 CAGCTGCCAACGGAGCCAGGCCGCGGCCGAGCAGCCGCCGT CAGCTGCCAACGGAGCCAGGCCGTGGCCGAGCAGCCGCCGT < 41bp 1 0.119709175723465 1 0.120968878269196 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MYO15A ENSG00000091536 CDS Human protein_coding chr17:18061139 chr17:18061142 synonymous SNV . 0 24 hm5C_associated_SNPs_12294 1 0 0 0 1 MYO15A chr17:18061214 5'GT 18061214 Upstream 73bp
chr17 18631041 18631041 1 + G A rs146869541 18631040 + 18631020 18631060 41 GCAGGAGCTGGAGACGATGGCGGCCATCAGCAACACTGTCC GCAGGAGCTGGAGACGATGGCAGCCATCAGCAACACTGTCC < 41bp 1 0.693102810057892 1 0.0938627123832703 experiment 0.613794379884216 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM16L ENSG00000108448 CDS Human protein_coding chr17:18631040 chr17:18631041 synonymous SNV . 0 22 hm5C_associated_SNPs_12305 0 0 0 0 1 TRIM16L chr17:18631071 5'GT 18631071 Upstream 31bp
chr17 18761508 18761508 1 + G A rs11548434 18761501 + 18761481 18761521 41 CCATTTTGCTCCTAGAGAGGCCGCCAGGAGACCCGGCGCTT CCATTTTGCTCCTAGAGAGGCCGCCAGAAGACCCGGCGCTT < 41bp 1 0.218319795269487 1 0.234347432851791 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRPSAP2 ENSG00000141127 UTR5 Human protein_coding chr17:18761501 chr17:18761508 . . 0 28 hm5C_associated_SNPs_12307 0 0 1 0 1 PRPSAP2 chr17:18761574 5'GT 18761574 Upstream 67bp
chr17 18761508 18761508 1 + G A rs11548434 18761502 + 18761482 18761522 41 CATTTTGCTCCTAGAGAGGCCGCCAGGAGACCCGGCGCTTT CATTTTGCTCCTAGAGAGGCCGCCAGAAGACCCGGCGCTTT < 41bp 1 0.769887267134016 1 0.393545806407928 experiment 0.460225465731968 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRPSAP2 ENSG00000141127 UTR5 Human protein_coding chr17:18761502 chr17:18761508 . . 0 27 hm5C_associated_SNPs_12308 0 0 1 0 1 PRPSAP2 chr17:18761574 5'GT 18761574 Upstream 67bp
chr17 18761508 18761508 1 + G A rs11548434 18761504 + 18761484 18761524 41 TTTTGCTCCTAGAGAGGCCGCCAGGAGACCCGGCGCTTTCT TTTTGCTCCTAGAGAGGCCGCCAGAAGACCCGGCGCTTTCT < 41bp 1 0.641829314241581 1 0.203890055418015 experiment 0.716341371516837 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRPSAP2 ENSG00000141127 UTR5 Human protein_coding chr17:18761504 chr17:18761508 . . 0 25 hm5C_associated_SNPs_12309 0 0 1 0 1 PRPSAP2 chr17:18761574 5'GT 18761574 Upstream 67bp
chr17 18761508 18761508 1 + G A rs11548434 18761505 + 18761485 18761525 41 TTTGCTCCTAGAGAGGCCGCCAGGAGACCCGGCGCTTTCTT TTTGCTCCTAGAGAGGCCGCCAGAAGACCCGGCGCTTTCTT < 41bp 1 0.71928277221314 1 0.784489095211029 experiment 0.561434455573721 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRPSAP2 ENSG00000141127 UTR5 Human protein_coding chr17:18761505 chr17:18761508 . . 0 24 hm5C_associated_SNPs_12310 0 0 1 0 1 PRPSAP2 chr17:18761574 5'GT 18761574 Upstream 67bp
chr17 18761508 18761508 1 + G A rs11548434 18761512 + 18761492 18761532 41 CTAGAGAGGCCGCCAGGAGACCCGGCGCTTTCTTCCTTCTG CTAGAGAGGCCGCCAGAAGACCCGGCGCTTTCTTCCTTCTG < 41bp 1 0.69769799586675 1 0.308438122272491 experiment 0.604604008266501 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRPSAP2 ENSG00000141127 UTR5 Human protein_coding chr17:18761512 chr17:18761508 . . 0 17 hm5C_associated_SNPs_12311 0 0 1 0 1 PRPSAP2 chr17:18761574 5'GT 18761574 Upstream 67bp
chr17 18761508 18761508 1 + G A rs11548434 18761513 + 18761493 18761533 41 TAGAGAGGCCGCCAGGAGACCCGGCGCTTTCTTCCTTCTGC TAGAGAGGCCGCCAGAAGACCCGGCGCTTTCTTCCTTCTGC < 41bp 1 0.552374761644584 1 0.332151114940643 experiment 0.895250476710833 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRPSAP2 ENSG00000141127 UTR5 Human protein_coding chr17:18761513 chr17:18761508 . . 0 16 hm5C_associated_SNPs_12312 0 0 1 0 1 PRPSAP2 chr17:18761574 5'GT 18761574 Upstream 67bp
chr17 18761508 18761508 1 + G A rs11548434 18761517 + 18761497 18761537 41 GAGGCCGCCAGGAGACCCGGCGCTTTCTTCCTTCTGCAGCT GAGGCCGCCAGAAGACCCGGCGCTTTCTTCCTTCTGCAGCT < 41bp 1 0.177895214116314 1 0.21112659573555 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRPSAP2 ENSG00000141127 UTR5 Human protein_coding chr17:18761517 chr17:18761508 . . 0 12 hm5C_associated_SNPs_12313 0 0 1 0 1 PRPSAP2 chr17:18761574 5'GT 18761574 Upstream 67bp
chr17 18768870 18768870 1 + C T rs2305061 18768865 + 18768845 18768885 41 TAAAACATTGAGCTCTTCAGCTCCGCCTTTCTTGTAAGTTT TAAAACATTGAGCTCTTCAGCTCCGTCTTTCTTGTAAGTTT < 41bp 1 0.448430042331417 1 0.393387138843536 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRPSAP2 ENSG00000141127 UTR5 Human protein_coding chr17:18768865 chr17:18768870 . . 0 26 hm5C_associated_SNPs_12314 0 0 1 0 1 PRPSAP2 chr17:18768877 5'GT 18768877 Upstream 8bp
chr17 20163529 20163529 1 + A G rs2703791 20163528 + 20163508 20163548 41 GGAAAGAAAAGACCCTCTGGCAGCCTTGGCCCGGGAATACG GGAAAGAAAAGACCCTCTGGCGGCCTTGGCCCGGGAATACG < 41bp 1 0.309118619577322 1 0.362438768148422 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20163528 chr17:20163529 synonymous SNV . 0 22 hm5C_associated_SNPs_12316 0 0 1 0 1 SPECC1 chr17:20163607 5'GT 20163607 Upstream 79bp
chr17 27011952 27011952 1 + A G rs535517531 27011948 + 27011928 27011968 41 CCATTTTACCAAACGGCGAACTGCATGGAGAGAGGAAGAGC CCATTTTACCAAACGGCGAACTGCGTGGAGAGAGGAAGAGC < 41bp 1 0.420203382610641 1 0.429911524057388 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27011948 chr17:27011952 synonymous SNV . 0 25 hm5C_associated_SNPs_12348 0 0 1 0 1 SUPT6H chr17:27011862 3'AG 27011862 Downstream 91bp
chr17 27047349 27047349 1 + A G rs573745975 27047345 + 27047325 27047365 41 GGAGCTCCATGTCCCCGGGCCTGTAAGGAATTAGTGCCCTC GGAGCTCCATGTCCCCGGGCCTGTGAGGAATTAGTGCCCTC < 41bp 1 0.31912149500457 1 0.141162037849426 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL23A ENSG00000198242 CDS Human protein_coding chr17:27047345 chr17:27047349 nonsynonymous SNV 0.011 1 25 hm5C_associated_SNPs_12350 0 0 1 0 1 RPL23A chr17:27047448 5'GT 27047448 Upstream 100bp
chr17 28712037 28712037 1 + C T rs117723754 28712048 + 28712028 28712068 41 GCATGGTGGCTCAGTGGTAGCAAGCTATCCTTTTGATGATT GCATGGTGGTTCAGTGGTAGCAAGCTATCCTTTTGATGATT < 41bp 1 0.432331048858372 1 0.3496073782444 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28712048 chr17:28712037 synonymous SNV . 0 10 hm5C_associated_SNPs_12361 0 0 1 0 1 CPD chr17:28712007 3'AG 28712007 Downstream 31bp
chr17 28961059 28961059 1 + C T rs9913939 28961053 + 28961033 28961073 41 TATGACTATAAGAACAAACTCATCTTCGCAATATCTGTGAC TATGACTATAAGAACAAACTCATCTTTGCAATATCTGTGAC < 41bp 1 0.0824288937283098 1 0.159927725791931 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC107133515 ENSG00000214719;ENSG00000250462 ncRNA_exonic Human other chr17:28961053 chr17:28961059 . . 0 27 hm5C_associated_SNPs_12364 0 0 1 0 1 LOC107133515 chr17:28961012 3'AG 28961012 Downstream 48bp
chr17 28961060 28961060 1 + G A rs192845598 28961053 + 28961033 28961073 41 TATGACTATAAGAACAAACTCATCTTCGCAATATCTGTGAC TATGACTATAAGAACAAACTCATCTTCACAATATCTGTGAC < 41bp 1 0.0624041293269356 1 0.305442333221436 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC107133515 ENSG00000214719;ENSG00000250462 ncRNA_exonic Human other chr17:28961053 chr17:28961060 . . 0 28 hm5C_associated_SNPs_12365 0 0 1 0 1 LOC107133515 chr17:28961012 3'AG 28961012 Downstream 49bp
chr17 30374786 30374786 1 + A C rs138060086 30374780 + 30374760 30374800 41 AGTCTCTTCTTTTCTGACAGCTGAAGAAGCATCTGTAGGGA AGTCTCTTCTTTTCTGACAGCTGAAGCAGCATCTGTAGGGA < 41bp 1 0.471947651955785 1 0.693696618080139 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRRC37B ENSG00000185158 CDS Human protein_coding chr17:30374780 chr17:30374786 nonsynonymous SNV 0.023 0 27 hm5C_associated_SNPs_12377 0 0 0 0 1 LRRC37B chr17:30374780 3'AG 30374780 Downstream 7bp
chr17 30692396 30692396 1 + G T rs3795244 30692381 + 30692361 30692401 41 CTGTTCCACGTCCTGGAATTCCTCCAATGACTCAAGCACAG CTGTTCCACGTCCTGGAATTCCTCCAATGACTCAATCACAG < 41bp 1 0.113218387896344 1 0.261854857206345 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30692381 chr17:30692396 nonsynonymous SNV 0.998 1 36 hm5C_associated_SNPs_12378 0 1 1 0 1 ZNF207 chr17:30692349 3'AG 30692349 Downstream 48bp
chr17 34058838 34058838 1 + G T rs587755687 34058834 + 34058814 34058854 41 GCCGGGGGGCAGCGCCGGAGCCCGGGGGGAGCTCAGCCCCG GCCGGGGGGCAGCGCCGGAGCCCGTGGGGAGCTCAGCCCCG < 41bp 1 0.781262640631837 1 0.423402100801468 experiment 0.437474718736325 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RASL10B ENSG00000141150 UTR5 Human other chr17:34058834 chr17:34058838 . . 0 25 hm5C_associated_SNPs_12390 0 0 1 0 1 RASL10B chr17:34058897 5'GT 34058897 Upstream 60bp
chr17 34058838 34058838 1 + G T rs587755687 34058835 + 34058815 34058855 41 CCGGGGGGCAGCGCCGGAGCCCGGGGGGAGCTCAGCCCCGC CCGGGGGGCAGCGCCGGAGCCCGTGGGGAGCTCAGCCCCGC < 41bp 1 0.719682335422608 1 0.717686414718628 experiment 0.560635329154785 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RASL10B ENSG00000141150 UTR5 Human other chr17:34058835 chr17:34058838 . . 0 24 hm5C_associated_SNPs_12391 0 0 1 0 1 RASL10B chr17:34058897 5'GT 34058897 Upstream 60bp
chr17 36619105 36619105 1 + G A rs530373399 36619123 + 36619103 36619143 41 CCGCCTGGAGCCCATGGACACCATCTTTGTCAAGAATGTGA CCACCTGGAGCCCATGGACACCATCTTTGTCAAGAATGTGA < 41bp 1 0.0300772800748686 1 0.0343067049980164 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP23 ENSG00000225485 CDS Human other chr17:36619123 chr17:36619105 nonsynonymous SNV 1.000 0 3 hm5C_associated_SNPs_12400 0 0 0 0 2 ARHGAP23 chr17:36619087 3'AG 36619087 Downstream 19bp
chr17 36619105 36619105 1 + G A rs530373399 36619123 + 36619103 36619143 41 CCGCCTGGAGCCCATGGACACCATCTTTGTCAAGAATGTGA CCACCTGGAGCCCATGGACACCATCTTTGTCAAGAATGTGA < 41bp 1 0.0300772800748686 1 0.0343067049980164 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP23 ENSG00000225485 CDS Human other chr17:36619123 chr17:36619105 nonsynonymous SNV 1.000 0 3 hm5C_associated_SNPs_12400 0 0 0 0 2 ARHGAP23 chr17:36619182 5'GT 36619182 Upstream 78bp
chr17 36619139 36619139 1 + T C rs61999279 36619123 + 36619103 36619143 41 CCGCCTGGAGCCCATGGACACCATCTTTGTCAAGAATGTGA CCGCCTGGAGCCCATGGACACCATCTTTGTCAAGAACGTGA < 41bp 1 0.0363516451602383 1 0.0406434834003448 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP23 ENSG00000225485 CDS Human other chr17:36619123 chr17:36619139 synonymous SNV . 0 37 hm5C_associated_SNPs_12401 0 0 1 0 2 ARHGAP23 chr17:36619087 3'AG 36619087 Downstream 53bp
chr17 36619139 36619139 1 + T C rs61999279 36619123 + 36619103 36619143 41 CCGCCTGGAGCCCATGGACACCATCTTTGTCAAGAATGTGA CCGCCTGGAGCCCATGGACACCATCTTTGTCAAGAACGTGA < 41bp 1 0.0363516451602383 1 0.0406434834003448 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP23 ENSG00000225485 CDS Human other chr17:36619123 chr17:36619139 synonymous SNV . 0 37 hm5C_associated_SNPs_12401 0 0 1 0 2 ARHGAP23 chr17:36619182 5'GT 36619182 Upstream 44bp
chr17 37070646 37070646 1 + G A rs143838983 37070657 + 37070637 37070677 41 GGAGCCAGAGCGTCGGGATTCACAGGACGGCAGCAGCTACC GGAGCCAGAACGTCGGGATTCACAGGACGGCAGCAGCTACC < 41bp 1 0.744284453610162 1 0.110614091157913 experiment 0.511431092779675 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LASP1 ENSG00000002834 CDS Human protein_coding chr17:37070657 chr17:37070646 synonymous SNV . 0 10 hm5C_associated_SNPs_12408 0 0 1 0 2 LASP1 chr17:37070578 3'AG 37070578 Downstream 69bp
chr17 37070646 37070646 1 + G A rs143838983 37070657 + 37070637 37070677 41 GGAGCCAGAGCGTCGGGATTCACAGGACGGCAGCAGCTACC GGAGCCAGAACGTCGGGATTCACAGGACGGCAGCAGCTACC < 41bp 1 0.744284453610162 1 0.110614091157913 experiment 0.511431092779675 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LASP1 ENSG00000002834 CDS Human protein_coding chr17:37070657 chr17:37070646 synonymous SNV . 0 10 hm5C_associated_SNPs_12408 0 0 1 0 2 LASP1 chr17:37070728 5'GT 37070728 Upstream 83bp
chr17 37070658 37070658 1 + A C rs525989 37070657 + 37070637 37070677 41 GGAGCCAGAGCGTCGGGATTCACAGGACGGCAGCAGCTACC GGAGCCAGAGCGTCGGGATTCCCAGGACGGCAGCAGCTACC < 41bp 1 0.546624134629239 1 0.147747993469238 experiment 0.906751730741521 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LASP1 ENSG00000002834 CDS Human protein_coding chr17:37070657 chr17:37070658 synonymous SNV . 0 22 hm5C_associated_SNPs_12409 0 0 1 0 2 LASP1 chr17:37070578 3'AG 37070578 Downstream 81bp
chr17 37070658 37070658 1 + A C rs525989 37070657 + 37070637 37070677 41 GGAGCCAGAGCGTCGGGATTCACAGGACGGCAGCAGCTACC GGAGCCAGAGCGTCGGGATTCCCAGGACGGCAGCAGCTACC < 41bp 1 0.546624134629239 1 0.147747993469238 experiment 0.906751730741521 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LASP1 ENSG00000002834 CDS Human protein_coding chr17:37070657 chr17:37070658 synonymous SNV . 0 22 hm5C_associated_SNPs_12409 0 0 1 0 2 LASP1 chr17:37070728 5'GT 37070728 Upstream 71bp
chr17 37358647 37358647 1 + C A rs2228666 37358628 + 37358608 37358648 41 ATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCG ATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCAG < 41bp 1 0.122473289885601 1 0.0301035642623901 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358628 chr17:37358647 synonymous SNV . 0 40 hm5C_associated_SNPs_12412 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 78bp
chr17 37358647 37358647 1 + C A rs2228666 37358628 + 37358608 37358648 41 ATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCG ATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCAG < 41bp 1 0.122473289885601 1 0.0301035642623901 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358628 chr17:37358647 synonymous SNV . 0 40 hm5C_associated_SNPs_12412 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 46bp
chr17 37358647 37358647 1 + C A rs2228666 37358657 + 37358637 37358677 41 GGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCA GGCTCGATGCAGGAAAAACACCTTGGCCCGCCGGAAGGGCA < 41bp 1 0.216463622673647 1 0.118910044431686 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358657 chr17:37358647 synonymous SNV . 0 11 hm5C_associated_SNPs_12413 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 78bp
chr17 37358647 37358647 1 + C A rs2228666 37358657 + 37358637 37358677 41 GGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCA GGCTCGATGCAGGAAAAACACCTTGGCCCGCCGGAAGGGCA < 41bp 1 0.216463622673647 1 0.118910044431686 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358657 chr17:37358647 synonymous SNV . 0 11 hm5C_associated_SNPs_12413 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 46bp
chr17 37358647 37358647 1 + C A rs2228666 37358663 + 37358643 37358683 41 ATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACA ATGCAGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACA < 41bp 1 0.243437730770942 1 0.063463419675827 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358663 chr17:37358647 synonymous SNV . 0 5 hm5C_associated_SNPs_12414 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 78bp
chr17 37358647 37358647 1 + C A rs2228666 37358663 + 37358643 37358683 41 ATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACA ATGCAGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACA < 41bp 1 0.243437730770942 1 0.063463419675827 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358663 chr17:37358647 synonymous SNV . 0 5 hm5C_associated_SNPs_12414 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 46bp
chr17 37358647 37358647 1 + C A rs2228666 37358664 + 37358644 37358684 41 TGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACAT TGCAGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACAT < 41bp 1 0.236601958359804 1 0.133879870176315 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358664 chr17:37358647 synonymous SNV . 0 4 hm5C_associated_SNPs_12415 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 78bp
chr17 37358647 37358647 1 + C A rs2228666 37358664 + 37358644 37358684 41 TGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACAT TGCAGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACAT < 41bp 1 0.236601958359804 1 0.133879870176315 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358664 chr17:37358647 synonymous SNV . 0 4 hm5C_associated_SNPs_12415 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 46bp
chr17 37358647 37358647 1 + C A rs2228666 37358665 + 37358645 37358685 41 GCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATG GCAGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATG < 41bp 1 0.764593453263972 1 0.121195614337921 experiment 0.470813093472057 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358665 chr17:37358647 synonymous SNV . 0 3 hm5C_associated_SNPs_12416 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 78bp
chr17 37358647 37358647 1 + C A rs2228666 37358665 + 37358645 37358685 41 GCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATG GCAGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATG < 41bp 1 0.764593453263972 1 0.121195614337921 experiment 0.470813093472057 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358665 chr17:37358647 synonymous SNV . 0 3 hm5C_associated_SNPs_12416 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 46bp
chr17 37358647 37358647 1 + C A rs2228666 37358667 + 37358647 37358687 41 CGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATGGG AGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATGGG < 41bp 1 0.789505166669501 1 0.441315650939941 experiment 0.420989666660998 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358667 chr17:37358647 synonymous SNV . 0 1 hm5C_associated_SNPs_12417 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 78bp
chr17 37358647 37358647 1 + C A rs2228666 37358667 + 37358647 37358687 41 CGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATGGG AGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATGGG < 41bp 1 0.789505166669501 1 0.441315650939941 experiment 0.420989666660998 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358667 chr17:37358647 synonymous SNV . 0 1 hm5C_associated_SNPs_12417 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 46bp
chr17 37358679 37358679 1 + G A rs201777990 37358663 + 37358643 37358683 41 ATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACA ATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGACACA < 41bp 1 0.19517879025496 1 0.0392897427082062 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358663 chr17:37358679 synonymous SNV . 0 37 hm5C_associated_SNPs_12418 0 0 1 0 1 RPL19 chr17:37358692 5'GT 37358692 Upstream 14bp
chr17 37358679 37358679 1 + G A rs201777990 37358664 + 37358644 37358684 41 TGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACAT TGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGACACAT < 41bp 1 0.225418906330266 1 0.0684616565704346 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358664 chr17:37358679 synonymous SNV . 0 36 hm5C_associated_SNPs_12419 0 0 1 0 1 RPL19 chr17:37358692 5'GT 37358692 Upstream 14bp
chr17 37358679 37358679 1 + G A rs201777990 37358665 + 37358645 37358685 41 GCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATG GCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGACACATG < 41bp 1 0.740294358073804 1 0.105392545461655 experiment 0.519411283852392 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358665 chr17:37358679 synonymous SNV . 0 35 hm5C_associated_SNPs_12420 0 0 1 0 1 RPL19 chr17:37358692 5'GT 37358692 Upstream 14bp
chr17 37358679 37358679 1 + G A rs201777990 37358667 + 37358647 37358687 41 CGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATGGG CGGAAAAACACCTTGGCCCGCCGGAAGGGCAGACACATGGG < 41bp 1 0.77053597532774 1 0.443522065877914 experiment 0.458928049344521 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358667 chr17:37358679 synonymous SNV . 0 33 hm5C_associated_SNPs_12421 0 0 1 0 1 RPL19 chr17:37358692 5'GT 37358692 Upstream 14bp
chr17 37358679 37358679 1 + G A rs201777990 37358680 + 37358660 37358700 41 TGGCCCGCCGGAAGGGCAGGCACATGGGCATAGGTAAGTGT TGGCCCGCCGGAAGGGCAGACACATGGGCATAGGTAAGTGT < 41bp 1 0.35980387595095 1 0.178043186664581 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358680 chr17:37358679 synonymous SNV . 0 20 hm5C_associated_SNPs_12422 0 0 1 0 1 RPL19 chr17:37358692 5'GT 37358692 Upstream 14bp
chr17 37358679 37358679 1 + G A rs201777990 37358688 + 37358668 37358708 41 CGGAAGGGCAGGCACATGGGCATAGGTAAGTGTGGTCATCT CGGAAGGGCAGACACATGGGCATAGGTAAGTGTGGTCATCT < 41bp 1 0.206243149477929 1 0.0847881138324738 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358688 chr17:37358679 synonymous SNV . 0 12 hm5C_associated_SNPs_12423 0 0 1 0 1 RPL19 chr17:37358692 5'GT 37358692 Upstream 14bp
chr17 37676269 37676269 1 + G T rs61747400 37676272 + 37676252 37676292 41 CTAGATCCTAGTAAGCGGTGCACAGCTGAACAGACCCTACA CTAGATCCTAGTAAGCGTTGCACAGCTGAACAGACCCTACA < 41bp 1 0.26134327868597 1 0.128199607133865 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37676272 chr17:37676269 synonymous SNV . 0 18 hm5C_associated_SNPs_12424 0 0 1 0 1 CDK12 chr17:37676209 3'AG 37676209 Downstream 61bp
chr17 37681085 37681085 1 + C T rs538927859 37681077 + 37681057 37681097 41 ACTGAGCCTGTGAAGAACAGCAGCCCAGCACCACCTCAGCC ACTGAGCCTGTGAAGAACAGCAGCCCAGTACCACCTCAGCC < 41bp 1 0.372007798762815 1 0.466533720493317 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37681077 chr17:37681085 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_12425 0 0 1 0 1 CDK12 chr17:37681138 5'GT 37681138 Upstream 54bp
chr17 37809750 37809750 1 + G A rs201782167 37809758 + 37809738 37809778 41 GCTGCTGAGGCCGCGCCCTCCCCGCCCTGAGGTGGGGGCCC GCTGCTGAGGCCACGCCCTCCCCGCCCTGAGGTGGGGGCCC < 41bp 1 0.188046100961632 1 0.504662752151489 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control STARD3 ENSG00000131748 UTR5 Human protein_coding chr17:37809758 chr17:37809750 . . 0 13 hm5C_associated_SNPs_12426 0 0 1 0 1 STARD3 chr17:37809734 3'AG 37809734 Downstream 17bp
chr17 37814080 37814080 1 + G A rs1877031 37814079 + 37814059 37814099 41 TCCTAGGCTATGCCGTGCTGCGGCTCCGGCACTGGTGGGTG TCCTAGGCTATGCCGTGCTGCAGCTCCGGCACTGGTGGGTG < 41bp 1 0.405495431410254 1 0.170491755008698 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STARD3 ENSG00000131748 CDS Human protein_coding chr17:37814079 chr17:37814080 nonsynonymous SNV 0.635 2 22 hm5C_associated_SNPs_12427 0 1 1 0 3 STARD3 chr17:37814028 3'AG 37814028 Downstream 53bp
chr17 37814080 37814080 1 + G A rs1877031 37814079 + 37814059 37814099 41 TCCTAGGCTATGCCGTGCTGCGGCTCCGGCACTGGTGGGTG TCCTAGGCTATGCCGTGCTGCAGCTCCGGCACTGGTGGGTG < 41bp 1 0.405495431410254 1 0.170491755008698 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STARD3 ENSG00000131748 CDS Human protein_coding chr17:37814079 chr17:37814080 nonsynonymous SNV 0.635 2 22 hm5C_associated_SNPs_12427 0 1 1 0 3 STARD3 chr17:37814092 5'GT 37814092 Upstream 13bp
chr17 37814080 37814080 1 + G A rs1877031 37814079 + 37814059 37814099 41 TCCTAGGCTATGCCGTGCTGCGGCTCCGGCACTGGTGGGTG TCCTAGGCTATGCCGTGCTGCAGCTCCGGCACTGGTGGGTG < 41bp 1 0.405495431410254 1 0.170491755008698 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STARD3 ENSG00000131748 CDS Human protein_coding chr17:37814079 chr17:37814080 nonsynonymous SNV 0.635 2 22 hm5C_associated_SNPs_12427 0 1 1 0 3 STARD3 chr17:37814105 5'GT 37814105 Upstream 26bp
chr17 37814086 37814086 1 + G A rs140618662 37814079 + 37814059 37814099 41 TCCTAGGCTATGCCGTGCTGCGGCTCCGGCACTGGTGGGTG TCCTAGGCTATGCCGTGCTGCGGCTCCAGCACTGGTGGGTG < 41bp 1 0.421297593000522 1 0.246691793203354 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STARD3 ENSG00000131748 CDS Human protein_coding chr17:37814079 chr17:37814086 nonsynonymous SNV 0.302 0 28 hm5C_associated_SNPs_12428 0 0 1 0 3 STARD3 chr17:37814028 3'AG 37814028 Downstream 59bp
chr17 37814086 37814086 1 + G A rs140618662 37814079 + 37814059 37814099 41 TCCTAGGCTATGCCGTGCTGCGGCTCCGGCACTGGTGGGTG TCCTAGGCTATGCCGTGCTGCGGCTCCAGCACTGGTGGGTG < 41bp 1 0.421297593000522 1 0.246691793203354 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STARD3 ENSG00000131748 CDS Human protein_coding chr17:37814079 chr17:37814086 nonsynonymous SNV 0.302 0 28 hm5C_associated_SNPs_12428 0 0 1 0 3 STARD3 chr17:37814092 5'GT 37814092 Upstream 7bp
chr17 37814086 37814086 1 + G A rs140618662 37814079 + 37814059 37814099 41 TCCTAGGCTATGCCGTGCTGCGGCTCCGGCACTGGTGGGTG TCCTAGGCTATGCCGTGCTGCGGCTCCAGCACTGGTGGGTG < 41bp 1 0.421297593000522 1 0.246691793203354 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STARD3 ENSG00000131748 CDS Human protein_coding chr17:37814079 chr17:37814086 nonsynonymous SNV 0.302 0 28 hm5C_associated_SNPs_12428 0 0 1 0 3 STARD3 chr17:37814105 5'GT 37814105 Upstream 20bp
chr17 37864584 37864584 1 + A C rs61737968 37864579 + 37864559 37864599 41 GCTTCCCCCTCCCAGGATATCCAGGAGGTGCAGGGCTACGT GCTTCCCCCTCCCAGGATATCCAGGCGGTGCAGGGCTACGT < 41bp 1 0.420012877991733 1 0.713628172874451 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37864579 chr17:37864584 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_12429 1 0 1 0 1 ERBB2 chr17:37864574 3'AG 37864574 Downstream 11bp
chr17 38137364 38137364 1 + G A rs3087852 38137363 + 38137343 38137383 41 GGCAGCGACGGGTGGCGGGTCGACGGGGGAGGCAGACGGCA GGCAGCGACGGGTGGCGGGTCAACGGGGGAGGCAGACGGCA < 41bp 1 0.740037533843749 1 0.79177188873291 experiment 0.519924932312502 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38137363 chr17:38137364 synonymous SNV . 0 22 hm5C_associated_SNPs_12430 0 0 1 0 1 PSMD3 chr17:38137430 5'GT 38137430 Upstream 67bp
chr17 38230516 38230516 1 + G A rs547817957 38230508 + 38230488 38230528 41 CACAGCCCGGGACCCACAAACCCAGCTTGCCCCCAGCCCTC CACAGCCCGGGACCCACAAACCCAGCTTACCCCCAGCCCTC < 41bp 1 0.406247730755394 1 0.431900203227997 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient THRA ENSG00000126351 UTR5 Human protein_coding chr17:38230508 chr17:38230516 . . 0 29 hm5C_associated_SNPs_12431 0 0 1 0 1 THRA chr17:38230445 3'AG 38230445 Downstream 72bp
chr17 38288318 38288318 1 + T C rs77077922 38288303 + 38288283 38288323 41 TCAGTTCCTTCTTGGAGGGACCACTCAGTAGAGCCTCTAAG TCAGTTCCTTCTTGGAGGGACCACTCAGTAGAGCCCCTAAG < 41bp 1 0.0567846805573132 1 0.0727232098579407 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSL1 ENSG00000188895 CDS Human protein_coding chr17:38288303 chr17:38288318 synonymous SNV . 0 36 hm5C_associated_SNPs_12432 0 0 1 0 2 MSL1 chr17:38288287 3'AG 38288287 Downstream 32bp
chr17 38288318 38288318 1 + T C rs77077922 38288303 + 38288283 38288323 41 TCAGTTCCTTCTTGGAGGGACCACTCAGTAGAGCCTCTAAG TCAGTTCCTTCTTGGAGGGACCACTCAGTAGAGCCCCTAAG < 41bp 1 0.0567846805573132 1 0.0727232098579407 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSL1 ENSG00000188895 CDS Human protein_coding chr17:38288303 chr17:38288318 synonymous SNV . 0 36 hm5C_associated_SNPs_12432 0 0 1 0 2 MSL1 chr17:38288351 5'GT 38288351 Upstream 34bp
chr17 38474693 38474693 1 + G T rs114559376 38474697 + 38474677 38474717 41 ACGGGTTGCTTCCCCCGCTGCGAGGTAATTCCTCCCCTGGG ACGGGTTGCTTCCCCCTCTGCGAGGTAATTCCTCCCCTGGG < 41bp 1 0.63171767940009 1 0.821529448032379 experiment 0.73656464119982 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RARA ENSG00000131759 UTR5 Human protein_coding chr17:38474697 chr17:38474693 . . 0 17 hm5C_associated_SNPs_12433 0 0 1 0 1 RARA chr17:38474700 5'GT 38474700 Upstream 8bp
chr17 39845231 39845231 1 + C T rs560903919 39845224 + 39845204 39845244 41 TTCCGTTCCCCCCTGCCCGCCTTCTCCCGCCACCGCCGCCG TTCCGTTCCCCCCTGCCCGCCTTCTCCTGCCACCGCCGCCG < 41bp 1 0.272283998753735 1 0.0860216021537781 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control EIF1 ENSG00000173812 UTR5 Human protein_coding chr17:39845224 chr17:39845231 . . 0 28 hm5C_associated_SNPs_12445 0 0 1 0 1 EIF1 chr17:39845321 5'GT 39845321 Upstream 91bp
chr17 39845231 39845231 1 + C T rs560903919 39845245 + 39845225 39845265 41 TTCTCCCGCCACCGCCGCCGCCGCCTTCCGCAGGCCGTTTC TTCTCCTGCCACCGCCGCCGCCGCCTTCCGCAGGCCGTTTC < 41bp 1 0.486478886080751 1 0.0641334354877472 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF1 ENSG00000173812 UTR5 Human protein_coding chr17:39845245 chr17:39845231 . . 0 7 hm5C_associated_SNPs_12446 0 0 1 0 1 EIF1 chr17:39845321 5'GT 39845321 Upstream 91bp
chr17 39975563 39975563 1 + C A rs138089753 39975559 + 39975539 39975579 41 CAGCTAGAGACGCTGGAGCTCCCCCCCGGCTGTGTCCGCAG CAGCTAGAGACGCTGGAGCTCCCCACCGGCTGTGTCCGCAG < 41bp 1 0.619620907422826 1 0.763517260551453 experiment 0.760758185154349 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39975559 chr17:39975563 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_12447 0 0 1 0 1 FKBP10 chr17:39975651 5'GT 39975651 Upstream 89bp
chr17 39978052 39978052 1 + G A rs76022961 39978062 + 39978042 39978082 41 CAAGGATGGCGAGGTCCCTCCGGAGGAGGTGGGTGAAGGTT CAAGGATGGCAAGGTCCCTCCGGAGGAGGTGGGTGAAGGTT < 41bp 1 0.545375225382018 1 0.667374908924103 experiment 0.909249549235964 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39978062 chr17:39978052 nonsynonymous SNV 0.626 0 11 hm5C_associated_SNPs_12450 0 0 1 0 1 FKBP10 chr17:39978069 5'GT 39978069 Upstream 18bp
chr17 40459629 40459629 1 + G C rs191983922 40459614 + 40459594 40459634 41 ATGCTCCGTGCACCCAGGGCCATCCTAGGTTTTGTGAATAA ATGCTCCGTGCACCCAGGGCCATCCTAGGTTTTGTCAATAA < 41bp 1 0.0408104161649799 1 0.0707267820835114 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STAT5A ENSG00000126561 CDS Human protein_coding chr17:40459614 chr17:40459629 synonymous SNV . 0 36 hm5C_associated_SNPs_12462 0 0 1 0 1 STAT5A chr17:40459611 3'AG 40459611 Downstream 19bp
chr17 40459668 40459668 1 + C A rs185687915 40459677 + 40459657 40459697 41 ATCAACAAGCCCGACGGGACCTTCTTGTTGCGCTTTAGTGA ATCAACAAGCCAGACGGGACCTTCTTGTTGCGCTTTAGTGA < 41bp 1 0.136709967509771 1 0.0378362834453583 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STAT5A ENSG00000126561 CDS Human protein_coding chr17:40459677 chr17:40459668 synonymous SNV . 0 12 hm5C_associated_SNPs_12463 0 0 1 0 2 STAT5A chr17:40459611 3'AG 40459611 Downstream 58bp
chr17 40459668 40459668 1 + C A rs185687915 40459677 + 40459657 40459697 41 ATCAACAAGCCCGACGGGACCTTCTTGTTGCGCTTTAGTGA ATCAACAAGCCAGACGGGACCTTCTTGTTGCGCTTTAGTGA < 41bp 1 0.136709967509771 1 0.0378362834453583 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STAT5A ENSG00000126561 CDS Human protein_coding chr17:40459677 chr17:40459668 synonymous SNV . 0 12 hm5C_associated_SNPs_12463 0 0 1 0 2 STAT5A chr17:40459741 5'GT 40459741 Upstream 74bp
chr17 40714721 40714721 1 + C T rs145723983 40714704 + 40714684 40714724 41 TGGCCTCCCTAGCCCCTCGCCTGGCCTCCATCCTGACCTCG TGGCCTCCCTAGCCCCTCGCCTGGCCTCCATCCTGACTTCG < 41bp 1 0.505556060267929 1 0.255551010370255 experiment 0.988887879464141 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COASY ENSG00000068120 CDS Human protein_coding chr17:40714704 chr17:40714721 synonymous SNV . 0 38 hm5C_associated_SNPs_12465 1 0 1 0 1 COASY chr17:40714630 3'AG 40714630 Downstream 92bp
chr17 40765986 40765986 1 + C G rs147337786 40765994 + 40765974 40766014 41 CTTCCTCATGACCGGCTACACCCCTCTCACTACGGACCAGT CTTCCTCATGACGGGCTACACCCCTCTCACTACGGACCAGT < 41bp 1 0.230143116648463 1 0.0227575600147247 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG1 ENSG00000131462 CDS Human protein_coding chr17:40765994 chr17:40765986 synonymous SNV . 0 13 hm5C_associated_SNPs_12467 0 0 1 0 1 TUBG1 chr17:40766016 5'GT 40766016 Upstream 31bp
chr17 40817764 40817764 1 + C T rs188631864 40817780 + 40817760 40817800 41 TCATCGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC TCATTGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC < 41bp 1 0.345930767593925 1 0.041000097990036 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817780 chr17:40817764 synonymous SNV . 0 5 hm5C_associated_SNPs_12469 0 0 0 0 2 TUBG2 chr17:40817696 3'AG 40817696 Downstream 69bp
chr17 40817764 40817764 1 + C T rs188631864 40817780 + 40817760 40817800 41 TCATCGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC TCATTGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC < 41bp 1 0.345930767593925 1 0.041000097990036 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817780 chr17:40817764 synonymous SNV . 0 5 hm5C_associated_SNPs_12469 0 0 0 0 2 TUBG2 chr17:40817845 5'GT 40817845 Upstream 82bp
chr17 40818216 40818216 1 + G A rs146103174 40818215 + 40818195 40818235 41 CAGACCAACCACTGCTACATCGCCATCCTCAACATCATCCA CAGACCAACCACTGCTACATCACCATCCTCAACATCATCCA < 41bp 1 0.744772747151526 1 0.0932658612728119 experiment 0.510454505696948 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40818215 chr17:40818216 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_12470 0 0 0 0 1 TUBG2 chr17:40818257 5'GT 40818257 Upstream 42bp
chr17 41154748 41154748 1 + C A rs191256004 41154768 + 41154748 41154788 41 CCTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAA ACTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAA < 41bp 1 0.269982286460596 1 0.43557271361351 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL27 ENSG00000131469 CDS Human protein_coding chr17:41154768 chr17:41154748 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_12474 0 0 1 0 2 RPL27 chr17:41154690 3'AG 41154690 Downstream 59bp
chr17 41154748 41154748 1 + C A rs191256004 41154768 + 41154748 41154788 41 CCTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAA ACTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAA < 41bp 1 0.269982286460596 1 0.43557271361351 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL27 ENSG00000131469 CDS Human protein_coding chr17:41154768 chr17:41154748 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_12474 0 0 1 0 2 RPL27 chr17:41154800 5'GT 41154800 Upstream 53bp
chr17 41348524 41348524 1 + C T rs368143342 41348532 + 41348512 41348552 41 ATGTCTCCTCTGCCACATGACAGTCCTTTAATAGAGAAGCC ATGTCTCCTCTGTCACATGACAGTCCTTTAATAGAGAAGCC < 41bp 1 0.150416758736768 1 0.190945446491241 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41348532 chr17:41348524 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_12476 0 0 1 0 2 NBR1 chr17:41348498 3'AG 41348498 Downstream 27bp
chr17 41348524 41348524 1 + C T rs368143342 41348532 + 41348512 41348552 41 ATGTCTCCTCTGCCACATGACAGTCCTTTAATAGAGAAGCC ATGTCTCCTCTGTCACATGACAGTCCTTTAATAGAGAAGCC < 41bp 1 0.150416758736768 1 0.190945446491241 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41348532 chr17:41348524 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_12476 0 0 1 0 2 NBR1 chr17:41348608 5'GT 41348608 Upstream 85bp
chr17 41477093 41477093 1 + A G rs115054688 41477110 + 41477090 41477130 41 CTTAGCTCACTATGGGGAACCACTTGACTGAGATGGCGCCC CTTGGCTCACTATGGGGAACCACTTGACTGAGATGGCGCCC < 41bp 1 0.412923219122731 1 0.188425570726395 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ARL4D ENSG00000175906 UTR5 Human protein_coding chr17:41477110 chr17:41477093 . . 0 4 hm5C_associated_SNPs_12477 0 0 1 0 1 ARL4D chr17:41477029 3'AG 41477029 Downstream 65bp
chr17 43220908 43220908 1 + C A rs115456393 43220912 + 43220892 43220932 41 TCGTCGTCCAGTGGCTCTTCCGAATGTTTCGGACCCAAAAG TCGTCGTCCAGTGGCTATTCCGAATGTTTCGGACCCAAAAG < 41bp 1 0.409061864941208 1 0.856917500495911 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43220912 chr17:43220908 nonsynonymous SNV 0.998 2 17 hm5C_associated_SNPs_12492 0 0 1 0 1 ACBD4 chr17:43220810 3'AG 43220810 Downstream 99bp
chr17 43317988 43317988 1 + C A rs146321570 43317975 + 43317955 43317995 41 TGGAGCACATGGAGGAACTGCAGGAGCAAGTGGCGCTGGTG TGGAGCACATGGAGGAACTGCAGGAGCAAGTGGAGCTGGTG < 41bp 1 0.688821175445931 1 0.55074542760849 experiment 0.622357649108138 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43317975 chr17:43317988 nonsynonymous SNV 0.290 2 34 hm5C_associated_SNPs_12496 0 0 1 0 1 FMNL1 chr17:43317992 5'GT 43317992 Upstream 5bp
chr17 43318566 43318566 1 + G A rs118179136 43318550 + 43318530 43318570 41 CCATGGCCAAGATTGCAGAACTGGAAAAACAGCTAAGCCAG CCATGGCCAAGATTGCAGAACTGGAAAAACAGCTAAACCAG < 41bp 1 0.767301486694445 1 0.577631652355194 experiment 0.465397026611109 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43318550 chr17:43318566 nonsynonymous SNV 0.998 0 37 hm5C_associated_SNPs_12497 0 0 0 0 1 FMNL1 chr17:43318597 5'GT 43318597 Upstream 32bp
chr17 46058901 46058901 1 + C T rs112342224 46058895 + 46058875 46058915 41 CCGTGTTCTTGCCTGCCCATCTTCTCCGCTTTTGGGATGAA CCGTGTTCTTGCCTGCCCATCTTCTCTGCTTTTGGGATGAA < 41bp 1 0.114564513849748 1 0.105311751365662 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDK5RAP3 ENSG00000264701 ncRNA_intronic Human protein_coding chr17:46058895 chr17:46058901 . . 0 27 hm5C_associated_SNPs_12504 0 0 1 1 1 CDK5RAP3 chr17:46058803 3'AG 46058803 Downstream 99bp
chr17 46058901 46058901 1 + C T rs112342224 46058898 + 46058878 46058918 41 TGTTCTTGCCTGCCCATCTTCTCCGCTTTTGGGATGAAGAT TGTTCTTGCCTGCCCATCTTCTCTGCTTTTGGGATGAAGAT < 41bp 1 0.312143268607708 1 0.245404005050659 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CDK5RAP3 ENSG00000264701 ncRNA_intronic Human protein_coding chr17:46058898 chr17:46058901 . . 0 24 hm5C_associated_SNPs_12505 0 0 1 1 1 CDK5RAP3 chr17:46058803 3'AG 46058803 Downstream 99bp
chr17 46184926 46184926 1 + C T rs4794453 46184945 + 46184925 46184965 41 ACCCGGCACCTGCGTGCACTCTCCGGCGTCCCAAGTGAGTG ATCCGGCACCTGCGTGCACTCTCCGGCGTCCCAAGTGAGTG < 41bp 1 0.66374670385025 1 0.801177561283112 experiment 0.672506592299499 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SNX11 ENSG00000002919 UTR5 Human protein_coding chr17:46184945 chr17:46184926 . . 0 2 hm5C_associated_SNPs_12507 0 0 0 0 1 SNX11 chr17:46184958 5'GT 46184958 Upstream 33bp
chr17 46940283 46940283 1 + T C rs34042259 46940294 + 46940274 46940314 41 GCCCCTTTGTTTCAATTGTCCAATTTGTGACAAGATCTTCC GCCCCTTTGCTTCAATTGTCCAATTTGTGACAAGATCTTCC < 41bp 1 0.132575809196279 1 0.187479794025421 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CALCOCO2 ENSG00000136436 CDS Human protein_coding chr17:46940294 chr17:46940283 synonymous SNV . 0 10 hm5C_associated_SNPs_12511 0 0 1 0 1 CALCOCO2 chr17:46940200 3'AG 46940200 Downstream 84bp
chr17 47904783 47904783 1 + A G rs147612239 47904766 + 47904746 47904786 41 CCATTGTTCTCCCTCAGGACCTGATTGATGAGTGGATAGCC CCATTGTTCTCCCTCAGGACCTGATTGATGAGTGGATGGCC < 41bp 1 0.22102546280226 1 0.0300179123878479 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KAT7 ENSG00000136504 CDS Human protein_coding chr17:47904766 chr17:47904783 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_12519 0 0 1 0 1 KAT7 chr17:47904763 3'AG 47904763 Downstream 21bp
chr17 48155425 48155425 1 + G A rs2230392 48155439 + 48155419 48155459 41 CTCATCGCCTTTGAGGTCATCGGGGTGACCCTGCACACAAG CTCATCACCTTTGAGGTCATCGGGGTGACCCTGCACACAAG < 41bp 1 0.796360658080731 1 0.95616352558136 experiment 0.407278683838538 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48155439 chr17:48155425 nonsynonymous SNV 0.995 0 7 hm5C_associated_SNPs_12520 0 0 0 0 2 ITGA3 chr17:48155410 3'AG 48155410 Downstream 16bp
chr17 48155425 48155425 1 + G A rs2230392 48155439 + 48155419 48155459 41 CTCATCGCCTTTGAGGTCATCGGGGTGACCCTGCACACAAG CTCATCACCTTTGAGGTCATCGGGGTGACCCTGCACACAAG < 41bp 1 0.796360658080731 1 0.95616352558136 experiment 0.407278683838538 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48155439 chr17:48155425 nonsynonymous SNV 0.995 0 7 hm5C_associated_SNPs_12520 0 0 0 0 2 ITGA3 chr17:48155489 5'GT 48155489 Upstream 65bp
chr17 48165713 48165713 1 + C G rs187586850 48165705 + 48165685 48165725 41 ACCGACGACTACTGAGGGGGCAGCCCCCCGCCCCCGGCCCA ACCGACGACTACTGAGGGGGCAGCCCCCGGCCCCCGGCCCA < 41bp 1 0.352775445397452 1 0.275190532207489 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165705 chr17:48165713 . . 0 29 hm5C_associated_SNPs_12521 0 0 1 0 1 ITGA3 chr17:48165730 5'GT 48165730 Upstream 18bp
chr17 48165713 48165713 1 + C G rs187586850 48165715 + 48165695 48165735 41 ACTGAGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAAC ACTGAGGGGGCAGCCCCCGGCCCCCGGCCCACCTGGGTAAC < 41bp 1 0.209859152360323 1 0.196139544248581 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165715 chr17:48165713 . . 0 19 hm5C_associated_SNPs_12522 0 0 1 0 1 ITGA3 chr17:48165730 5'GT 48165730 Upstream 18bp
chr17 48165713 48165713 1 + C G rs187586850 48165716 + 48165696 48165736 41 CTGAGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAACA CTGAGGGGGCAGCCCCCGGCCCCCGGCCCACCTGGGTAACA < 41bp 1 0.278946430065774 1 0.118668645620346 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165716 chr17:48165713 . . 0 18 hm5C_associated_SNPs_12523 0 0 1 0 1 ITGA3 chr17:48165730 5'GT 48165730 Upstream 18bp
chr17 48165713 48165713 1 + C G rs187586850 48165717 + 48165697 48165737 41 TGAGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAACAC TGAGGGGGCAGCCCCCGGCCCCCGGCCCACCTGGGTAACAC < 41bp 1 0.399316010869842 1 0.107278019189835 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165717 chr17:48165713 . . 0 17 hm5C_associated_SNPs_12524 0 0 1 0 1 ITGA3 chr17:48165730 5'GT 48165730 Upstream 18bp
chr17 48165713 48165713 1 + C G rs187586850 48165718 + 48165698 48165738 41 GAGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAACACG GAGGGGGCAGCCCCCGGCCCCCGGCCCACCTGGGTAACACG < 41bp 1 0.167030193916403 1 0.259819835424423 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165718 chr17:48165713 . . 0 16 hm5C_associated_SNPs_12525 0 0 1 0 1 ITGA3 chr17:48165730 5'GT 48165730 Upstream 18bp
chr17 48165713 48165713 1 + C G rs187586850 48165719 + 48165699 48165739 41 AGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAACACGG AGGGGGCAGCCCCCGGCCCCCGGCCCACCTGGGTAACACGG < 41bp 1 0.36413980329735 1 0.808478713035583 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165719 chr17:48165713 . . 0 15 hm5C_associated_SNPs_12526 0 0 1 0 1 ITGA3 chr17:48165730 5'GT 48165730 Upstream 18bp
chr17 48165720 48165720 1 + G A rs140614661 48165705 + 48165685 48165725 41 ACCGACGACTACTGAGGGGGCAGCCCCCCGCCCCCGGCCCA ACCGACGACTACTGAGGGGGCAGCCCCCCGCCCCCAGCCCA < 41bp 1 0.308478850792528 1 0.37536546587944 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165705 chr17:48165720 . . 0 36 hm5C_associated_SNPs_12527 0 0 1 1 1 ITGA3 chr17:48165730 5'GT 48165730 Upstream 11bp
chr17 48165720 48165720 1 + G A rs140614661 48165715 + 48165695 48165735 41 ACTGAGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAAC ACTGAGGGGGCAGCCCCCCGCCCCCAGCCCACCTGGGTAAC < 41bp 1 0.205398342768339 1 0.28998327255249 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165715 chr17:48165720 . . 0 26 hm5C_associated_SNPs_12528 0 0 1 1 1 ITGA3 chr17:48165730 5'GT 48165730 Upstream 11bp
chr17 48165720 48165720 1 + G A rs140614661 48165716 + 48165696 48165736 41 CTGAGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAACA CTGAGGGGGCAGCCCCCCGCCCCCAGCCCACCTGGGTAACA < 41bp 1 0.395038255975863 1 0.181744158267975 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165716 chr17:48165720 . . 0 25 hm5C_associated_SNPs_12529 0 0 1 1 1 ITGA3 chr17:48165730 5'GT 48165730 Upstream 11bp
chr17 48165720 48165720 1 + G A rs140614661 48165717 + 48165697 48165737 41 TGAGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAACAC TGAGGGGGCAGCCCCCCGCCCCCAGCCCACCTGGGTAACAC < 41bp 1 0.214363814719171 1 0.139705985784531 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165717 chr17:48165720 . . 0 24 hm5C_associated_SNPs_12530 0 0 1 1 1 ITGA3 chr17:48165730 5'GT 48165730 Upstream 11bp
chr17 48165720 48165720 1 + G A rs140614661 48165718 + 48165698 48165738 41 GAGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAACACG GAGGGGGCAGCCCCCCGCCCCCAGCCCACCTGGGTAACACG < 41bp 1 0.0842942134315326 1 0.124434351921082 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165718 chr17:48165720 . . 0 23 hm5C_associated_SNPs_12531 0 0 1 1 1 ITGA3 chr17:48165730 5'GT 48165730 Upstream 11bp
chr17 48165720 48165720 1 + G A rs140614661 48165719 + 48165699 48165739 41 AGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAACACGG AGGGGGCAGCCCCCCGCCCCCAGCCCACCTGGGTAACACGG < 41bp 1 0.325604499575811 1 0.791081368923187 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165719 chr17:48165720 . . 0 22 hm5C_associated_SNPs_12532 0 0 1 1 1 ITGA3 chr17:48165730 5'GT 48165730 Upstream 11bp
chr17 48185715 48185715 1 + G C rs576054151 48185696 + 48185676 48185716 41 TCCGCAGAATGCCATGAGGGCGACTGTGGAAAGCCATGAGT TCCGCAGAATGCCATGAGGGCGACTGTGGAAAGCCATGACT < 41bp 1 0.367897778538396 1 0.135297745466232 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK2 ENSG00000005882 CDS Human protein_coding chr17:48185696 chr17:48185715 nonsynonymous SNV 0.965 0 40 hm5C_associated_SNPs_12534 0 0 1 0 2 PDK2 chr17:48185683 3'AG 48185683 Downstream 33bp
chr17 48185715 48185715 1 + G C rs576054151 48185696 + 48185676 48185716 41 TCCGCAGAATGCCATGAGGGCGACTGTGGAAAGCCATGAGT TCCGCAGAATGCCATGAGGGCGACTGTGGAAAGCCATGACT < 41bp 1 0.367897778538396 1 0.135297745466232 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK2 ENSG00000005882 CDS Human protein_coding chr17:48185696 chr17:48185715 nonsynonymous SNV 0.965 0 40 hm5C_associated_SNPs_12534 0 0 1 0 2 PDK2 chr17:48185781 5'GT 48185781 Upstream 67bp
chr17 48185715 48185715 1 + G C rs576054151 48185699 + 48185679 48185719 41 GCAGAATGCCATGAGGGCGACTGTGGAAAGCCATGAGTCCA GCAGAATGCCATGAGGGCGACTGTGGAAAGCCATGACTCCA < 41bp 1 0.423454794854848 1 0.326108455657959 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK2 ENSG00000005882 CDS Human protein_coding chr17:48185699 chr17:48185715 nonsynonymous SNV 0.965 0 37 hm5C_associated_SNPs_12535 0 0 1 0 2 PDK2 chr17:48185683 3'AG 48185683 Downstream 33bp
chr17 48185715 48185715 1 + G C rs576054151 48185699 + 48185679 48185719 41 GCAGAATGCCATGAGGGCGACTGTGGAAAGCCATGAGTCCA GCAGAATGCCATGAGGGCGACTGTGGAAAGCCATGACTCCA < 41bp 1 0.423454794854848 1 0.326108455657959 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK2 ENSG00000005882 CDS Human protein_coding chr17:48185699 chr17:48185715 nonsynonymous SNV 0.965 0 37 hm5C_associated_SNPs_12535 0 0 1 0 2 PDK2 chr17:48185781 5'GT 48185781 Upstream 67bp
chr17 48631733 48631733 1 + C T rs147637130 48631727 + 48631707 48631747 41 TGTGTGTGCCTATTGACCGCCTTTTCCGAGCGCATGCGTCG TGTGTGTGCCTATTGACCGCCTTTTCTGAGCGCATGCGTCG < 41bp 1 0.0576084592614221 1 0.0201388597488403 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPATA20 ENSG00000006282 CDS Human protein_coding chr17:48631727 chr17:48631733 synonymous SNV . 0 27 hm5C_associated_SNPs_12540 0 0 1 0 1 SPATA20 chr17:48631811 5'GT 48631811 Upstream 79bp
chr17 48696111 48696111 1 + G T rs201895309 48696108 + 48696088 48696128 41 TTCGTGCTGACGGCCCAGTTCGTGCTAGTCAACGTGGTGAT TTCGTGCTGACGGCCCAGTTCGTTCTAGTCAACGTGGTGAT < 41bp 1 0.213803174664554 1 0.0886621475219727 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48696108 chr17:48696111 synonymous SNV . 0 24 hm5C_associated_SNPs_12541 0 0 1 0 1 CACNA1G chr17:48696016 3'AG 48696016 Downstream 96bp
chr17 49239140 49239140 1 + C T rs566810694 49239124 + 49239104 49239144 41 CAGTGATTCTGTGGAGAGTGCAGAGAAGGAGATCGGCTTGT CAGTGATTCTGTGGAGAGTGCAGAGAAGGAGATCGGTTTGT < 41bp 1 0.411978017994793 1 0.3665452003479 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NME1 ENSG00000239672 CDS Human protein_coding chr17:49239124 chr17:49239140 synonymous SNV . 0 37 hm5C_associated_SNPs_12542 0 0 1 0 1 NME1 chr17:49239089 3'AG 49239089 Downstream 52bp
chr17 49245701 49245701 1 + C T rs530546146 49245691 + 49245671 49245711 41 GAAGTACATGAACTCAGGGCCGGTTGTGGCCATGGTGAGTG GAAGTACATGAACTCAGGGCCGGTTGTGGCTATGGTGAGTG < 41bp 1 0.31008683801423 1 0.154196739196777 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49245691 chr17:49245701 synonymous SNV . 0 31 hm5C_associated_SNPs_12544 0 0 1 0 2 NME1-NME2;NME2 chr17:49245603 3'AG 49245603 Downstream 99bp
chr17 49245701 49245701 1 + C T rs530546146 49245691 + 49245671 49245711 41 GAAGTACATGAACTCAGGGCCGGTTGTGGCCATGGTGAGTG GAAGTACATGAACTCAGGGCCGGTTGTGGCTATGGTGAGTG < 41bp 1 0.31008683801423 1 0.154196739196777 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49245691 chr17:49245701 synonymous SNV . 0 31 hm5C_associated_SNPs_12544 0 0 1 0 2 NME1-NME2;NME2 chr17:49245704 5'GT 49245704 Upstream 4bp
chr17 49248866 49248866 1 + T C rs148956596 49248851 + 49248831 49248871 41 ATTGTTTTCTTTCTTAGGAACATCATTCATGGCAGTGATTC ATTGTTTTCTTTCTTAGGAACATCATTCATGGCAGCGATTC < 41bp 1 0.245733870603354 1 0.031509667634964 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49248851 chr17:49248866 stoploss 0.994 0 36 hm5C_associated_SNPs_12545 0 0 1 0 1 NME1-NME2;NME2 chr17:49248848 3'AG 49248848 Downstream 19bp
chr17 49248866 49248866 1 + T C rs148956596 49248854 + 49248834 49248874 41 GTTTTCTTTCTTAGGAACATCATTCATGGCAGTGATTCAGT GTTTTCTTTCTTAGGAACATCATTCATGGCAGCGATTCAGT < 41bp 1 0.02923486397568 1 0.113658905029297 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49248854 chr17:49248866 stoploss 0.994 0 33 hm5C_associated_SNPs_12546 0 0 1 0 1 NME1-NME2;NME2 chr17:49248848 3'AG 49248848 Downstream 19bp
chr17 53844742 53844742 1 + G A rs112454522 53844740 + 53844720 53844760 41 GTCTTTGGTGTTCTGGAGGACTGCTCACCAACTCTACTGGC GTCTTTGGTGTTCTGGAGGACTACTCACCAACTCTACTGGC < 41bp 1 0.250856087538885 1 0.0653965175151825 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53844740 chr17:53844742 nonsynonymous SNV 0.008 4 23 hm5C_associated_SNPs_12548 0 0 1 0 2 PCTP chr17:53844696 3'AG 53844696 Downstream 47bp
chr17 53844742 53844742 1 + G A rs112454522 53844740 + 53844720 53844760 41 GTCTTTGGTGTTCTGGAGGACTGCTCACCAACTCTACTGGC GTCTTTGGTGTTCTGGAGGACTACTCACCAACTCTACTGGC < 41bp 1 0.250856087538885 1 0.0653965175151825 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53844740 chr17:53844742 nonsynonymous SNV 0.008 4 23 hm5C_associated_SNPs_12548 0 0 1 0 2 PCTP chr17:53844813 5'GT 53844813 Upstream 72bp
chr17 53852178 53852178 1 + G A rs79806530 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTCGATAACCCAGGTGGCCAAATTCCGTCCTGGCTCATT < 41bp 1 0.265355306488145 1 0.194811552762985 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852178 synonymous SNV . 0 14 hm5C_associated_SNPs_12549 0 0 1 1 2 PCTP chr17:53852153 3'AG 53852153 Downstream 26bp
chr17 53852178 53852178 1 + G A rs79806530 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTCGATAACCCAGGTGGCCAAATTCCGTCCTGGCTCATT < 41bp 1 0.265355306488145 1 0.194811552762985 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852178 synonymous SNV . 0 14 hm5C_associated_SNPs_12549 0 0 1 1 2 PCTP chr17:53852220 5'GT 53852220 Upstream 43bp
chr17 55055497 55055497 1 + T A rs368149430 55055496 + 55055476 55055516 41 GCGCCGGGTCCAGCCTGTTGCTGATGCTGCCGTGCGGTACT GCGCCGGGTCCAGCCTGTTGCAGATGCTGCCGTGCGGTACT < 41bp 1 0.785149501874531 1 0.493688851594925 experiment 0.429700996250938 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCPEP1 ENSG00000121064 UTR5 Human protein_coding chr17:55055496 chr17:55055497 . . 0 22 hm5C_associated_SNPs_12553 0 0 0 0 1 SCPEP1 chr17:55055596 5'GT 55055596 Upstream 100bp
chr17 55055497 55055497 1 + T A rs368149430 55055502 + 55055482 55055522 41 GGTCCAGCCTGTTGCTGATGCTGCCGTGCGGTACTTGTCAT GGTCCAGCCTGTTGCAGATGCTGCCGTGCGGTACTTGTCAT < 41bp 1 0.799765503890796 1 0.200157195329666 experiment 0.400468992218407 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCPEP1 ENSG00000121064 UTR5 Human protein_coding chr17:55055502 chr17:55055497 . . 0 16 hm5C_associated_SNPs_12554 0 0 0 0 1 SCPEP1 chr17:55055596 5'GT 55055596 Upstream 100bp
chr17 55194242 55194242 1 + G A rs116339701 55194240 + 55194220 55194260 41 GGTCTGACTTTGTCACCCTGCCGTTTCAGGGAGCAGAAGTC GGTCTGACTTTGTCACCCTGCCATTTCAGGGAGCAGAAGTC < 41bp 1 0.0315232068061885 1 0.0598895847797394 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194240 chr17:55194242 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_12556 0 0 1 0 2 AKAP1 chr17:55194221 3'AG 55194221 Downstream 22bp
chr17 55194242 55194242 1 + G A rs116339701 55194240 + 55194220 55194260 41 GGTCTGACTTTGTCACCCTGCCGTTTCAGGGAGCAGAAGTC GGTCTGACTTTGTCACCCTGCCATTTCAGGGAGCAGAAGTC < 41bp 1 0.0315232068061885 1 0.0598895847797394 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194240 chr17:55194242 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_12556 0 0 1 0 2 AKAP1 chr17:55194288 5'GT 55194288 Upstream 47bp
chr17 55194242 55194242 1 + G A rs116339701 55194241 + 55194221 55194261 41 GTCTGACTTTGTCACCCTGCCGTTTCAGGGAGCAGAAGTCC GTCTGACTTTGTCACCCTGCCATTTCAGGGAGCAGAAGTCC < 41bp 1 0.0417497210381503 1 0.0501104593276978 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194241 chr17:55194242 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_12557 0 0 1 0 2 AKAP1 chr17:55194221 3'AG 55194221 Downstream 22bp
chr17 55194242 55194242 1 + G A rs116339701 55194241 + 55194221 55194261 41 GTCTGACTTTGTCACCCTGCCGTTTCAGGGAGCAGAAGTCC GTCTGACTTTGTCACCCTGCCATTTCAGGGAGCAGAAGTCC < 41bp 1 0.0417497210381503 1 0.0501104593276978 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194241 chr17:55194242 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_12557 0 0 1 0 2 AKAP1 chr17:55194288 5'GT 55194288 Upstream 47bp
chr17 55194242 55194242 1 + G A rs116339701 55194253 + 55194233 55194273 41 CACCCTGCCGTTTCAGGGAGCAGAAGTCCTTCTGGACAGTG CACCCTGCCATTTCAGGGAGCAGAAGTCCTTCTGGACAGTG < 41bp 1 0.449359310618953 1 0.416833430528641 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194253 chr17:55194242 nonsynonymous SNV . 0 10 hm5C_associated_SNPs_12558 0 0 1 0 2 AKAP1 chr17:55194221 3'AG 55194221 Downstream 22bp
chr17 55194242 55194242 1 + G A rs116339701 55194253 + 55194233 55194273 41 CACCCTGCCGTTTCAGGGAGCAGAAGTCCTTCTGGACAGTG CACCCTGCCATTTCAGGGAGCAGAAGTCCTTCTGGACAGTG < 41bp 1 0.449359310618953 1 0.416833430528641 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194253 chr17:55194242 nonsynonymous SNV . 0 10 hm5C_associated_SNPs_12558 0 0 1 0 2 AKAP1 chr17:55194288 5'GT 55194288 Upstream 47bp
chr17 57280881 57280881 1 + C T rs188344787 57280865 + 57280845 57280885 41 CAAAGTGCTGAGATTACAGGCGTGAGCCACCACGCCCGGCC CAAAGTGCTGAGATTACAGGCGTGAGCCACCACGCCTGGCC < 41bp 1 0.685845074815836 1 0.529391050338745 experiment 0.628309850368328 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRR11 ENSG00000265415 ncRNA_intronic Human antisense chr17:57280865 chr17:57280881 . . 0 37 hm5C_associated_SNPs_12560 0 0 1 0 1 PRR11 chr17:57280822 3'AG 57280822 Downstream 60bp
chr17 57280882 57280882 1 + G A rs192983561 57280865 + 57280845 57280885 41 CAAAGTGCTGAGATTACAGGCGTGAGCCACCACGCCCGGCC CAAAGTGCTGAGATTACAGGCGTGAGCCACCACGCCCAGCC < 41bp 1 0.715003031163353 1 0.432442098855972 experiment 0.569993937673293 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRR11 ENSG00000265415 ncRNA_intronic Human antisense chr17:57280865 chr17:57280882 . . 0 38 hm5C_associated_SNPs_12561 0 0 1 0 1 PRR11 chr17:57280822 3'AG 57280822 Downstream 61bp
chr17 59482065 59482065 1 + C A rs182290035 59482066 + 59482046 59482086 41 TCGTCGTGCGACCCTCCCCCCGCGCGGGAACCACCCACCTC TCGTCGTGCGACCCTCCCCACGCGCGGGAACCACCCACCTC < 41bp 1 0.72100967903086 1 0.146165609359741 experiment 0.55798064193828 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBX2 ENSG00000121068 CDS Human protein_coding chr17:59482066 chr17:59482065 nonsynonymous SNV 0.455 4 20 hm5C_associated_SNPs_12564 0 0 0 0 2 TBX2 chr17:59481967 3'AG 59481967 Downstream 99bp
chr17 59482065 59482065 1 + C A rs182290035 59482066 + 59482046 59482086 41 TCGTCGTGCGACCCTCCCCCCGCGCGGGAACCACCCACCTC TCGTCGTGCGACCCTCCCCACGCGCGGGAACCACCCACCTC < 41bp 1 0.72100967903086 1 0.146165609359741 experiment 0.55798064193828 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBX2 ENSG00000121068 CDS Human protein_coding chr17:59482066 chr17:59482065 nonsynonymous SNV 0.455 4 20 hm5C_associated_SNPs_12564 0 0 0 0 2 TBX2 chr17:59482130 5'GT 59482130 Upstream 66bp
chr17 62525471 62525471 1 + C T rs553416493 62525477 + 62525457 62525497 41 CTCCAGTTAACAAACACAAACAGTTCCACTTGGAGAGAAAA CTCCAGTTAACAAATACAAACAGTTCCACTTGGAGAGAAAA < 41bp 1 0.151022414154387 1 0.201005131006241 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP95 ENSG00000258890 CDS Human protein_coding chr17:62525477 chr17:62525471 nonsynonymous SNV 0.047 0 15 hm5C_associated_SNPs_12584 0 0 0 0 2 CEP95 chr17:62525406 3'AG 62525406 Downstream 66bp
chr17 62525471 62525471 1 + C T rs553416493 62525477 + 62525457 62525497 41 CTCCAGTTAACAAACACAAACAGTTCCACTTGGAGAGAAAA CTCCAGTTAACAAATACAAACAGTTCCACTTGGAGAGAAAA < 41bp 1 0.151022414154387 1 0.201005131006241 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP95 ENSG00000258890 CDS Human protein_coding chr17:62525477 chr17:62525471 nonsynonymous SNV 0.047 0 15 hm5C_associated_SNPs_12584 0 0 0 0 2 CEP95 chr17:62525545 5'GT 62525545 Upstream 75bp
chr17 62525473 62525473 1 + C A rs573184058 62525477 + 62525457 62525497 41 CTCCAGTTAACAAACACAAACAGTTCCACTTGGAGAGAAAA CTCCAGTTAACAAACAAAAACAGTTCCACTTGGAGAGAAAA < 41bp 1 0.179004745211208 1 0.324596494436264 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP95 ENSG00000258890 CDS Human protein_coding chr17:62525477 chr17:62525473 nonsynonymous SNV 0.010 0 17 hm5C_associated_SNPs_12585 0 0 0 0 2 CEP95 chr17:62525406 3'AG 62525406 Downstream 68bp
chr17 62525473 62525473 1 + C A rs573184058 62525477 + 62525457 62525497 41 CTCCAGTTAACAAACACAAACAGTTCCACTTGGAGAGAAAA CTCCAGTTAACAAACAAAAACAGTTCCACTTGGAGAGAAAA < 41bp 1 0.179004745211208 1 0.324596494436264 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP95 ENSG00000258890 CDS Human protein_coding chr17:62525477 chr17:62525473 nonsynonymous SNV 0.010 0 17 hm5C_associated_SNPs_12585 0 0 0 0 2 CEP95 chr17:62525545 5'GT 62525545 Upstream 73bp
chr17 64783081 64783081 1 + G A rs6504459 64783073 + 64783053 64783093 41 AAAATCCTTGTCCAAGGAGGCTGTTTCTGTCTGCAAAGGAG AAAATCCTTGTCCAAGGAGGCTGTTTCTATCTGCAAAGGAG < 41bp 1 0.04058404798873 1 0.139999061822891 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64783073 chr17:64783081 nonsynonymous SNV 0.975 0 29 hm5C_associated_SNPs_12586 0 0 1 0 2 PRKCA chr17:64782985 3'AG 64782985 Downstream 97bp
chr17 64783081 64783081 1 + G A rs6504459 64783073 + 64783053 64783093 41 AAAATCCTTGTCCAAGGAGGCTGTTTCTGTCTGCAAAGGAG AAAATCCTTGTCCAAGGAGGCTGTTTCTATCTGCAAAGGAG < 41bp 1 0.04058404798873 1 0.139999061822891 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64783073 chr17:64783081 nonsynonymous SNV 0.975 0 29 hm5C_associated_SNPs_12586 0 0 1 0 2 PRKCA chr17:64783092 5'GT 64783092 Upstream 12bp
chr17 66038264 66038264 1 + G A rs202246339 66038276 + 66038256 66038296 41 TTGATTCCGAAATTTGTGTCCTTCTTGGGCAGAACTGATTG TTGATTCCAAAATTTGTGTCCTTCTTGGGCAGAACTGATTG < 41bp 1 0.188898899771676 1 0.0809124708175659 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66038276 chr17:66038264 synonymous SNV . 0 9 hm5C_associated_SNPs_12593 0 0 1 0 1 KPNA2 chr17:66038201 3'AG 66038201 Downstream 64bp
chr17 66251941 66251941 1 + G A rs573816812 66251944 + 66251924 66251964 41 GGAAGAAGCTGACCGGCGCCCTCTAAACCTTTGCCCTATCT GGAAGAAGCTGACCGGCACCCTCTAAACCTTTGCCCTATCT < 41bp 1 0.763090697266006 1 0.832728326320648 experiment 0.473818605467988 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control AMZ2 ENSG00000196704 CDS Human protein_coding chr17:66251944 chr17:66251941 nonsynonymous SNV 0.986 3 18 hm5C_associated_SNPs_12594 0 0 1 0 1 AMZ2 chr17:66252017 5'GT 66252017 Upstream 77bp
chr17 71233118 71233118 1 + G A rs117209041 71233112 + 71233092 71233132 41 AAGCCACAACTTATCAGTCCCCAGGGGGAAAGACTCTCACA AAGCCACAACTTATCAGTCCCCAGGGAGAAAGACTCTCACA < 41bp 1 0.509085746593092 1 0.548308730125427 experiment 0.981828506813816 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71233112 chr17:71233118 synonymous SNV . 0 27 hm5C_associated_SNPs_12614 0 0 1 0 1 C17orf80 chr17:71233134 5'GT 71233134 Upstream 17bp
chr17 71233130 71233130 1 + A G rs11869253 71233112 + 71233092 71233132 41 AAGCCACAACTTATCAGTCCCCAGGGGGAAAGACTCTCACA AAGCCACAACTTATCAGTCCCCAGGGGGAAAGACTCTCGCA < 41bp 1 0.530582661947579 1 0.733515620231628 experiment 0.938834676104842 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71233112 chr17:71233130 synonymous SNV . 0 39 hm5C_associated_SNPs_12615 0 0 0 0 1 C17orf80 chr17:71233134 5'GT 71233134 Upstream 5bp
chr17 71239087 71239087 1 + G A rs1566290 71239105 + 71239085 71239125 41 ACGATGCTCTTCACAGGATACTTCGTCCTGTGTTGTAGCTG ACAATGCTCTTCACAGGATACTTCGTCCTGTGTTGTAGCTG < 41bp 1 0.371387940594556 1 0.026333749294281 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71239105 chr17:71239087 synonymous SNV . 0 3 hm5C_associated_SNPs_12616 0 0 1 0 2 C17orf80 chr17:71239035 3'AG 71239035 Downstream 53bp
chr17 71239087 71239087 1 + G A rs1566290 71239105 + 71239085 71239125 41 ACGATGCTCTTCACAGGATACTTCGTCCTGTGTTGTAGCTG ACAATGCTCTTCACAGGATACTTCGTCCTGTGTTGTAGCTG < 41bp 1 0.371387940594556 1 0.026333749294281 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71239105 chr17:71239087 synonymous SNV . 0 3 hm5C_associated_SNPs_12616 0 0 1 0 2 C17orf80 chr17:71239142 5'GT 71239142 Upstream 56bp
chr17 72199826 72199826 1 + C T rs576043787 72199841 + 72199821 72199861 41 TTCGTCCTTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTCT TTCGTTCTTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTCT < 41bp 1 0.278890648867617 1 0.22856816649437 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL38 ENSG00000172809 UTR5 Human protein_coding chr17:72199841 chr17:72199826 . . 0 6 hm5C_associated_SNPs_12617 0 0 1 0 2 RPL38 chr17:72199849 5'GT 72199849 Upstream 24bp
chr17 72199826 72199826 1 + C T rs576043787 72199841 + 72199821 72199861 41 TTCGTCCTTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTCT TTCGTTCTTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTCT < 41bp 1 0.278890648867617 1 0.22856816649437 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL38 ENSG00000172809 UTR5 Human protein_coding chr17:72199841 chr17:72199826 . . 0 6 hm5C_associated_SNPs_12617 0 0 1 0 2 RPL38 chr17:72199884 5'GT 72199884 Upstream 59bp
chr17 72199834 72199834 1 + C G rs76291586 72199841 + 72199821 72199861 41 TTCGTCCTTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTCT TTCGTCCTTTTCCGCGGTTGCTGCTTGCTGTGAGTGTCTCT < 41bp 1 0.310991834782997 1 0.218851238489151 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL38 ENSG00000172809 UTR5 Human protein_coding chr17:72199841 chr17:72199834 . . 0 14 hm5C_associated_SNPs_12618 0 0 1 0 2 RPL38 chr17:72199849 5'GT 72199849 Upstream 16bp
chr17 72199834 72199834 1 + C G rs76291586 72199841 + 72199821 72199861 41 TTCGTCCTTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTCT TTCGTCCTTTTCCGCGGTTGCTGCTTGCTGTGAGTGTCTCT < 41bp 1 0.310991834782997 1 0.218851238489151 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL38 ENSG00000172809 UTR5 Human protein_coding chr17:72199841 chr17:72199834 . . 0 14 hm5C_associated_SNPs_12618 0 0 1 0 2 RPL38 chr17:72199884 5'GT 72199884 Upstream 51bp
chr17 72199834 72199834 1 + C G rs76291586 72199848 + 72199828 72199868 41 TTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTCTAGGGTGA TTTTCCGCGGTTGCTGCTTGCTGTGAGTGTCTCTAGGGTGA < 41bp 1 0.424799330990876 1 0.123483389616013 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL38 ENSG00000172809 UTR5 Human protein_coding chr17:72199848 chr17:72199834 . . 0 7 hm5C_associated_SNPs_12619 0 0 1 0 2 RPL38 chr17:72199849 5'GT 72199849 Upstream 16bp
chr17 72199834 72199834 1 + C G rs76291586 72199848 + 72199828 72199868 41 TTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTCTAGGGTGA TTTTCCGCGGTTGCTGCTTGCTGTGAGTGTCTCTAGGGTGA < 41bp 1 0.424799330990876 1 0.123483389616013 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL38 ENSG00000172809 UTR5 Human protein_coding chr17:72199848 chr17:72199834 . . 0 7 hm5C_associated_SNPs_12619 0 0 1 0 2 RPL38 chr17:72199884 5'GT 72199884 Upstream 51bp
chr17 72199845 72199845 1 + T C rs541788320 72199841 + 72199821 72199861 41 TTCGTCCTTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTCT TTCGTCCTTTTCCCCGGTTGCTGCCTGCTGTGAGTGTCTCT < 41bp 1 0.226730045482689 1 0.16775369644165 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL38 ENSG00000172809 UTR5 Human protein_coding chr17:72199841 chr17:72199845 . . 0 25 hm5C_associated_SNPs_12620 0 0 1 0 2 RPL38 chr17:72199849 5'GT 72199849 Upstream 5bp
chr17 72199845 72199845 1 + T C rs541788320 72199841 + 72199821 72199861 41 TTCGTCCTTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTCT TTCGTCCTTTTCCCCGGTTGCTGCCTGCTGTGAGTGTCTCT < 41bp 1 0.226730045482689 1 0.16775369644165 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL38 ENSG00000172809 UTR5 Human protein_coding chr17:72199841 chr17:72199845 . . 0 25 hm5C_associated_SNPs_12620 0 0 1 0 2 RPL38 chr17:72199884 5'GT 72199884 Upstream 40bp
chr17 72199845 72199845 1 + T C rs541788320 72199848 + 72199828 72199868 41 TTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTCTAGGGTGA TTTTCCCCGGTTGCTGCCTGCTGTGAGTGTCTCTAGGGTGA < 41bp 1 0.331793778830596 1 0.199148297309875 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL38 ENSG00000172809 UTR5 Human protein_coding chr17:72199848 chr17:72199845 . . 0 18 hm5C_associated_SNPs_12621 0 0 1 0 2 RPL38 chr17:72199849 5'GT 72199849 Upstream 5bp
chr17 72199845 72199845 1 + T C rs541788320 72199848 + 72199828 72199868 41 TTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTCTAGGGTGA TTTTCCCCGGTTGCTGCCTGCTGTGAGTGTCTCTAGGGTGA < 41bp 1 0.331793778830596 1 0.199148297309875 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL38 ENSG00000172809 UTR5 Human protein_coding chr17:72199848 chr17:72199845 . . 0 18 hm5C_associated_SNPs_12621 0 0 1 0 2 RPL38 chr17:72199884 5'GT 72199884 Upstream 40bp
chr17 72199860 72199860 1 + C G rs76423818 72199841 + 72199821 72199861 41 TTCGTCCTTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTCT TTCGTCCTTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTGT < 41bp 1 0.278711917337238 1 0.148866266012192 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL38 ENSG00000172809 UTR5 Human protein_coding chr17:72199841 chr17:72199860 . . 0 40 hm5C_associated_SNPs_12622 0 0 1 0 1 RPL38 chr17:72199884 5'GT 72199884 Upstream 25bp
chr17 72199860 72199860 1 + C G rs76423818 72199848 + 72199828 72199868 41 TTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTCTAGGGTGA TTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTGTAGGGTGA < 41bp 1 0.387640845904377 1 0.0641725361347198 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL38 ENSG00000172809 UTR5 Human protein_coding chr17:72199848 chr17:72199860 . . 0 33 hm5C_associated_SNPs_12623 0 0 1 0 1 RPL38 chr17:72199884 5'GT 72199884 Upstream 25bp
chr17 73513677 73513677 1 + A C rs11559205 73513687 + 73513667 73513707 41 GCCACTGTCTATCCAGGAAGCTTACCAGCTGCTGCTGACCG GCCACTGTCTCTCCAGGAAGCTTACCAGCTGCTGCTGACCG < 41bp 1 0.0579450892287986 1 0.0181275904178619 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73513687 chr17:73513677 nonsynonymous SNV 0.995 2 11 hm5C_associated_SNPs_12645 2 0 1 0 2 TSEN54 chr17:73513638 3'AG 73513638 Downstream 40bp
chr17 73513677 73513677 1 + A C rs11559205 73513687 + 73513667 73513707 41 GCCACTGTCTATCCAGGAAGCTTACCAGCTGCTGCTGACCG GCCACTGTCTCTCCAGGAAGCTTACCAGCTGCTGCTGACCG < 41bp 1 0.0579450892287986 1 0.0181275904178619 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73513687 chr17:73513677 nonsynonymous SNV 0.995 2 11 hm5C_associated_SNPs_12645 2 0 1 0 2 TSEN54 chr17:73513736 5'GT 73513736 Upstream 60bp
chr17 73513705 73513705 1 + C A rs201623351 73513687 + 73513667 73513707 41 GCCACTGTCTATCCAGGAAGCTTACCAGCTGCTGCTGACCG GCCACTGTCTATCCAGGAAGCTTACCAGCTGCTGCTGAACG < 41bp 1 0.0440153668426274 1 0.0486963093280792 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73513687 chr17:73513705 nonsynonymous SNV 0.687 0 39 hm5C_associated_SNPs_12646 0 0 1 0 2 TSEN54 chr17:73513638 3'AG 73513638 Downstream 68bp
chr17 73513705 73513705 1 + C A rs201623351 73513687 + 73513667 73513707 41 GCCACTGTCTATCCAGGAAGCTTACCAGCTGCTGCTGACCG GCCACTGTCTATCCAGGAAGCTTACCAGCTGCTGCTGAACG < 41bp 1 0.0440153668426274 1 0.0486963093280792 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73513687 chr17:73513705 nonsynonymous SNV 0.687 0 39 hm5C_associated_SNPs_12646 0 0 1 0 2 TSEN54 chr17:73513736 5'GT 73513736 Upstream 32bp
chr17 73738709 73738709 1 + C G rs147068910 73738719 + 73738699 73738739 41 AGCTGGTGGACGTACGGGTGCCCCTCTTTATCCGGCCTGAG AGCTGGTGGAGGTACGGGTGCCCCTCTTTATCCGGCCTGAG < 41bp 1 0.129327897216239 1 0.0337329506874084 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73738719 chr17:73738709 nonsynonymous SNV 0.874 4 11 hm5C_associated_SNPs_12650 0 0 0 0 1 ITGB4 chr17:73738663 3'AG 73738663 Downstream 47bp
chr17 73745015 73745015 1 + T C rs530916890 73745021 + 73745001 73745041 41 TGCAAGAAGTTGACTCCCTCCTGCGGGGCCGCCAGGTCCGC TGCAAGAAGTTGACCCCCTCCTGCGGGGCCGCCAGGTCCGC < 41bp 1 0.623258599585183 1 0.806787729263306 experiment 0.753482800829633 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73745021 chr17:73745015 nonsynonymous SNV 0.821 2 15 hm5C_associated_SNPs_12651 0 0 0 0 1 ITGB4 chr17:73744922 3'AG 73744922 Downstream 94bp
chr17 73745031 73745031 1 + G A rs147026529 73745021 + 73745001 73745041 41 TGCAAGAAGTTGACTCCCTCCTGCGGGGCCGCCAGGTCCGC TGCAAGAAGTTGACTCCCTCCTGCGGGGCCACCAGGTCCGC < 41bp 1 0.636600658844801 1 0.866208553314209 experiment 0.726798682310398 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73745021 chr17:73745031 nonsynonymous SNV 0.931 0 31 hm5C_associated_SNPs_12652 0 0 0 0 1 ITGB4 chr17:73745126 5'GT 73745126 Upstream 96bp
chr17 73750859 73750859 1 + C A rs8669 73750868 + 73750848 73750888 41 ACCACACTGCCCAGGGACTACTCCACCCTCACCTCCGTCTC ACCACACTGCCAAGGGACTACTCCACCCTCACCTCCGTCTC < 41bp 1 0.636402226549479 1 0.764699578285217 experiment 0.727195546901042 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73750868 chr17:73750859 synonymous SNV . 0 12 hm5C_associated_SNPs_12655 0 0 0 0 1 ITGB4 chr17:73750896 5'GT 73750896 Upstream 38bp
chr17 73814836 73814836 1 + C T rs76256594 73814827 + 73814807 73814847 41 CCTAGCCCAGTGGGCACCAGCAGCGTCCCCGGCATGAATGC CCTAGCCCAGTGGGCACCAGCAGCGTCCCTGGCATGAATGC < 41bp 1 0.683823971444343 1 0.310820162296295 experiment 0.632352057111315 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73814827 chr17:73814836 synonymous SNV . 0 30 hm5C_associated_SNPs_12657 0 0 0 0 1 UNK chr17:73814897 5'GT 73814897 Upstream 62bp
chr17 73814836 73814836 1 + C T rs76256594 73814851 + 73814831 73814871 41 GTCCCCGGCATGAATGCAAACGCTCTGCCCTTCTACCCCAC GTCCCTGGCATGAATGCAAACGCTCTGCCCTTCTACCCCAC < 41bp 1 0.385275260256829 1 0.328525513410568 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73814851 chr17:73814836 synonymous SNV . 0 6 hm5C_associated_SNPs_12658 0 0 0 0 1 UNK chr17:73814897 5'GT 73814897 Upstream 62bp
chr17 74261677 74261677 1 + T A rs2585751 74261657 + 74261637 74261677 41 CGTGCTGGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGT CGTGCTGGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGA < 41bp 1 0.661738097883071 1 0.793696641921997 experiment 0.676523804233859 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UBALD2 ENSG00000185262 CDS Human protein_coding chr17:74261657 chr17:74261677 nonsynonymous SNV 0.998 3 41 hm5C_associated_SNPs_12659 0 0 0 0 1 UBALD2 chr17:74261706 5'GT 74261706 Upstream 30bp
chr17 74261677 74261677 1 + T A rs2585751 74261660 + 74261640 74261680 41 GCTGGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGTTGC GCTGGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGATGC < 41bp 1 0.251819366180033 1 0.234489589929581 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UBALD2 ENSG00000185262 CDS Human protein_coding chr17:74261660 chr17:74261677 nonsynonymous SNV 0.998 3 38 hm5C_associated_SNPs_12660 0 0 0 0 1 UBALD2 chr17:74261706 5'GT 74261706 Upstream 30bp
chr17 74261677 74261677 1 + T A rs2585751 74261661 + 74261641 74261681 41 CTGGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGTTGCT CTGGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGATGCT < 41bp 1 0.301801842835756 1 0.126096606254578 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UBALD2 ENSG00000185262 CDS Human protein_coding chr17:74261661 chr17:74261677 nonsynonymous SNV 0.998 3 37 hm5C_associated_SNPs_12661 0 0 0 0 1 UBALD2 chr17:74261706 5'GT 74261706 Upstream 30bp
chr17 75090184 75090184 1 + G A rs150793676 75090199 + 75090179 75090219 41 GCGGTGGTGTGACCTCGGCTCACTGCATCCTCCGCCTCCCG GCGGTAGTGTGACCTCGGCTCACTGCATCCTCCGCCTCCCG < 41bp 1 0.284151657922477 1 0.119969218969345 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SNHG20 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75090199 chr17:75090184 . . 0 6 hm5C_associated_SNPs_12689 0 0 1 0 1 SNHG20 chr17:75090152 3'AG 75090152 Downstream 33bp
chr17 75090194 75090194 1 + C G rs557214931 75090199 + 75090179 75090219 41 GCGGTGGTGTGACCTCGGCTCACTGCATCCTCCGCCTCCCG GCGGTGGTGTGACCTGGGCTCACTGCATCCTCCGCCTCCCG < 41bp 1 0.324614008979281 1 0.0994852781295776 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SNHG20 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75090199 chr17:75090194 . . 0 16 hm5C_associated_SNPs_12690 0 0 1 0 1 SNHG20 chr17:75090152 3'AG 75090152 Downstream 43bp
chr17 75090211 75090211 1 + C T rs117430551 75090199 + 75090179 75090219 41 GCGGTGGTGTGACCTCGGCTCACTGCATCCTCCGCCTCCCG GCGGTGGTGTGACCTCGGCTCACTGCATCCTCTGCCTCCCG < 41bp 1 0.285426851191911 1 0.156084060668945 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SNHG20 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75090199 chr17:75090211 . . 0 33 hm5C_associated_SNPs_12691 0 0 1 0 1 SNHG20 chr17:75090152 3'AG 75090152 Downstream 60bp
chr17 78075606 78075606 1 + C T rs190152638 78075595 + 78075575 78075615 41 ACCTCGGTGACGCGAAGGACCCCGGCCACCTCTAGGTTCTC ACCTCGGTGACGCGAAGGACCCCGGCCACCTTTAGGTTCTC < 41bp 1 0.334582389705635 1 0.0532124042510986 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAA ENSG00000171298 UTR5 Human protein_coding chr17:78075595 chr17:78075606 . . 0 32 hm5C_associated_SNPs_12753 1 0 0 0 1 GAA chr17:78075689 5'GT 78075689 Upstream 84bp
chr17 78087041 78087041 1 + G A rs1800309 78087058 + 78087038 78087078 41 AGCGAGCCGGCCCAGCAGGCCATGAGGAAGGCCCTCACCCT AGCAAGCCGGCCCAGCAGGCCATGAGGAAGGCCCTCACCCT < 41bp 1 0.654243173045477 1 0.332828342914581 experiment 0.691513653909045 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78087058 chr17:78087041 nonsynonymous SNV 0.911 1 4 hm5C_associated_SNPs_12760 3 0 1 0 1 GAA chr17:78087017 3'AG 78087017 Downstream 25bp
chr17 78172328 78172328 1 + C A rs73429414 78172335 + 78172315 78172355 41 CATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGCGGACC CATCTTCATCCACAGGGTCACCCCGGGCTCGGCGGCGGACC < 41bp 1 0.320766622942086 1 0.0603547692298889 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172335 chr17:78172328 synonymous SNV . 0 14 hm5C_associated_SNPs_12761 0 0 0 0 1 CARD14 chr17:78172390 5'GT 78172390 Upstream 63bp
chr17 78172328 78172328 1 + C A rs73429414 78172336 + 78172316 78172356 41 ATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGCGGACCA ATCTTCATCCACAGGGTCACCCCGGGCTCGGCGGCGGACCA < 41bp 1 0.516588774493095 1 0.652013182640076 experiment 0.966822451013809 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172336 chr17:78172328 synonymous SNV . 0 13 hm5C_associated_SNPs_12762 0 0 0 0 1 CARD14 chr17:78172390 5'GT 78172390 Upstream 63bp
chr17 78172344 78172344 1 + C T rs201285077 78172335 + 78172315 78172355 41 CATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGCGGACC CATCTTCATCCACCGGGTCACCCCGGGCTTGGCGGCGGACC < 41bp 1 0.299919687471923 1 0.103425770998001 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172335 chr17:78172344 nonsynonymous SNV 0.292 4 30 hm5C_associated_SNPs_12763 0 0 0 0 1 CARD14 chr17:78172390 5'GT 78172390 Upstream 47bp
chr17 78172344 78172344 1 + C T rs201285077 78172336 + 78172316 78172356 41 ATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGCGGACCA ATCTTCATCCACCGGGTCACCCCGGGCTTGGCGGCGGACCA < 41bp 1 0.544773322569741 1 0.80250072479248 experiment 0.910453354860517 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172336 chr17:78172344 nonsynonymous SNV 0.292 4 29 hm5C_associated_SNPs_12764 0 0 0 0 1 CARD14 chr17:78172390 5'GT 78172390 Upstream 47bp
chr17 78172345 78172345 1 + G A rs113127952 78172335 + 78172315 78172355 41 CATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGCGGACC CATCTTCATCCACCGGGTCACCCCGGGCTCAGCGGCGGACC < 41bp 1 0.365058698970245 1 0.0434909164905548 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172335 chr17:78172345 synonymous SNV . 0 31 hm5C_associated_SNPs_12765 0 0 0 0 1 CARD14 chr17:78172390 5'GT 78172390 Upstream 46bp
chr17 78172345 78172345 1 + G A rs113127952 78172336 + 78172316 78172356 41 ATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGCGGACCA ATCTTCATCCACCGGGTCACCCCGGGCTCAGCGGCGGACCA < 41bp 1 0.558877198239803 1 0.739258766174316 experiment 0.882245603520393 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172336 chr17:78172345 synonymous SNV . 0 30 hm5C_associated_SNPs_12766 0 0 0 0 1 CARD14 chr17:78172390 5'GT 78172390 Upstream 46bp
chr17 78201686 78201686 1 + C T rs61011315 78201694 + 78201674 78201714 41 GATGCGGGACCACGTGCCTCCCGTCCACCCCGAGATGCCCC GATGCGGGACCATGTGCCTCCCGTCCACCCCGAGATGCCCC < 41bp 1 0.0954288642045732 1 0.520676910877228 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78201694 chr17:78201686 synonymous SNV . 0 13 hm5C_associated_SNPs_12767 0 0 1 0 1 SLC26A11 chr17:78201759 5'GT 78201759 Upstream 74bp
chr17 78201687 78201687 1 + G A rs151155883 78201694 + 78201674 78201714 41 GATGCGGGACCACGTGCCTCCCGTCCACCCCGAGATGCCCC GATGCGGGACCACATGCCTCCCGTCCACCCCGAGATGCCCC < 41bp 1 0.0778597733462918 1 0.308976203203201 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78201694 chr17:78201687 nonsynonymous SNV 0.069 1 14 hm5C_associated_SNPs_12768 0 0 1 0 1 SLC26A11 chr17:78201759 5'GT 78201759 Upstream 73bp
chr17 78310124 78310124 1 + T C rs527433585 78310125 + 78310105 78310145 41 TCAGTGCATTCATGAAGCATCTGAAAAAGCTGTGGAAGGCT TCAGTGCATTCATGAAGCACCTGAAAAAGCTGTGGAAGGCT < 41bp 1 0.11751416003537 1 0.410942196846008 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78310125 chr17:78310124 synonymous SNV . 0 20 hm5C_associated_SNPs_12769 0 0 1 0 1 RNF213 chr17:78310178 5'GT 78310178 Upstream 55bp
chr17 78349663 78349663 1 + C T rs562763648 78349659 + 78349639 78349679 41 CCCACAATGCAAGCCTCCACCCCACGCCAGAGGTGAGTAAC CCCACAATGCAAGCCTCCACCCCATGCCAGAGGTGAGTAAC < 41bp 1 0.0335245418765895 1 0.156344473361969 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78349659 chr17:78349663 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_12776 0 0 1 0 1 RNF213 chr17:78349670 5'GT 78349670 Upstream 8bp
chr17 78349664 78349664 1 + G A rs371433961 78349659 + 78349639 78349679 41 CCCACAATGCAAGCCTCCACCCCACGCCAGAGGTGAGTAAC CCCACAATGCAAGCCTCCACCCCACACCAGAGGTGAGTAAC < 41bp 1 0.0203882823648402 1 0.196544200181961 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78349659 chr17:78349664 synonymous SNV . 0 26 hm5C_associated_SNPs_12777 0 0 1 0 1 RNF213 chr17:78349670 5'GT 78349670 Upstream 7bp
chr17 78350165 78350165 1 + G A rs150148627 78350171 + 78350151 78350191 41 TCCTGATATCAGCCGTTTTGCAACATCGCTCGTGGACAATT TCCTGATATCAGCCATTTTGCAACATCGCTCGTGGACAATT < 41bp 1 0.193879012993641 1 0.33419930934906 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78350171 chr17:78350165 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_12778 0 0 1 0 1 RNF213 chr17:78350101 3'AG 78350101 Downstream 65bp
chr17 78350175 78350175 1 + A G rs138587836 78350171 + 78350151 78350191 41 TCCTGATATCAGCCGTTTTGCAACATCGCTCGTGGACAATT TCCTGATATCAGCCGTTTTGCAACGTCGCTCGTGGACAATT < 41bp 1 0.139279502130664 1 0.531487882137299 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78350171 chr17:78350175 synonymous SNV . 0 25 hm5C_associated_SNPs_12779 0 0 1 0 1 RNF213 chr17:78350101 3'AG 78350101 Downstream 75bp
chr17 78362500 78362500 1 + T C rs114649707 78362510 + 78362490 78362530 41 GTGATCCCGATAAACCTGATCCTGTGCACGGGGCTTTCTGC GTGATCCCGACAAACCTGATCCTGTGCACGGGGCTTTCTGC < 41bp 1 0.0118736652138005 1 0.0769124925136566 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC100294362 ENSG00000263069 ncRNA_intronic Human protein_coding chr17:78362510 chr17:78362500 . . 0 11 hm5C_associated_SNPs_12780 0 0 1 0 1 RNF213 chr17:78362412 3'AG 78362412 Downstream 89bp
chr17 78704389 78704389 1 + A G rs181909860 78704396 + 78704376 78704416 41 TCCCTCTGTCCATATATGACCTGCAGACGTGGATGGGCAGC TCCCTCTGTCCATGTATGACCTGCAGACGTGGATGGGCAGC < 41bp 1 0.516160747268663 1 0.309237509965897 experiment 0.967678505462675 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPTOR ENSG00000141564 CDS Human protein_coding chr17:78704396 chr17:78704389 nonsynonymous SNV 0.997 2 14 hm5C_associated_SNPs_12783 0 0 1 0 1 RPTOR chr17:78704360 3'AG 78704360 Downstream 30bp
chr17 79213403 79213403 1 + G T rs374420845 79213405 + 79213385 79213425 41 GTGCGTGCAGGCCTCCACGGCCCCGGGCGGCCGCCTGAGTA GTGCGTGCAGGCCTCCACTGCCCCGGGCGGCCGCCTGAGTA < 41bp 1 0.485909820628338 1 0.212707132101059 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFAF8 ENSG00000224877 CDS Human protein_coding chr17:79213405 chr17:79213403 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_12792 0 0 1 0 3 NDUFAF8 chr17:79213368 3'AG 79213368 Downstream 36bp
chr17 79213403 79213403 1 + G T rs374420845 79213405 + 79213385 79213425 41 GTGCGTGCAGGCCTCCACGGCCCCGGGCGGCCGCCTGAGTA GTGCGTGCAGGCCTCCACTGCCCCGGGCGGCCGCCTGAGTA < 41bp 1 0.485909820628338 1 0.212707132101059 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFAF8 ENSG00000224877 CDS Human protein_coding chr17:79213405 chr17:79213403 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_12792 0 0 1 0 3 NDUFAF8 chr17:79213395 3'AG 79213395 Downstream 9bp
chr17 79213403 79213403 1 + G T rs374420845 79213405 + 79213385 79213425 41 GTGCGTGCAGGCCTCCACGGCCCCGGGCGGCCGCCTGAGTA GTGCGTGCAGGCCTCCACTGCCCCGGGCGGCCGCCTGAGTA < 41bp 1 0.485909820628338 1 0.212707132101059 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFAF8 ENSG00000224877 CDS Human protein_coding chr17:79213405 chr17:79213403 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_12792 0 0 1 0 3 NDUFAF8 chr17:79213478 5'GT 79213478 Upstream 76bp
chr17 79213403 79213403 1 + G T rs374420845 79213406 + 79213386 79213426 41 TGCGTGCAGGCCTCCACGGCCCCGGGCGGCCGCCTGAGTAA TGCGTGCAGGCCTCCACTGCCCCGGGCGGCCGCCTGAGTAA < 41bp 1 0.717004047764241 1 0.633678674697876 experiment 0.565991904471518 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFAF8 ENSG00000224877 CDS Human protein_coding chr17:79213406 chr17:79213403 nonsynonymous SNV . 0 18 hm5C_associated_SNPs_12793 0 0 1 0 3 NDUFAF8 chr17:79213368 3'AG 79213368 Downstream 36bp
chr17 79213403 79213403 1 + G T rs374420845 79213406 + 79213386 79213426 41 TGCGTGCAGGCCTCCACGGCCCCGGGCGGCCGCCTGAGTAA TGCGTGCAGGCCTCCACTGCCCCGGGCGGCCGCCTGAGTAA < 41bp 1 0.717004047764241 1 0.633678674697876 experiment 0.565991904471518 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFAF8 ENSG00000224877 CDS Human protein_coding chr17:79213406 chr17:79213403 nonsynonymous SNV . 0 18 hm5C_associated_SNPs_12793 0 0 1 0 3 NDUFAF8 chr17:79213395 3'AG 79213395 Downstream 9bp
chr17 79213403 79213403 1 + G T rs374420845 79213406 + 79213386 79213426 41 TGCGTGCAGGCCTCCACGGCCCCGGGCGGCCGCCTGAGTAA TGCGTGCAGGCCTCCACTGCCCCGGGCGGCCGCCTGAGTAA < 41bp 1 0.717004047764241 1 0.633678674697876 experiment 0.565991904471518 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFAF8 ENSG00000224877 CDS Human protein_coding chr17:79213406 chr17:79213403 nonsynonymous SNV . 0 18 hm5C_associated_SNPs_12793 0 0 1 0 3 NDUFAF8 chr17:79213478 5'GT 79213478 Upstream 76bp
chr17 79213403 79213403 1 + G T rs374420845 79213407 + 79213387 79213427 41 GCGTGCAGGCCTCCACGGCCCCGGGCGGCCGCCTGAGTAAG GCGTGCAGGCCTCCACTGCCCCGGGCGGCCGCCTGAGTAAG < 41bp 1 0.728207232009535 1 0.405090063810349 experiment 0.543585535980931 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFAF8 ENSG00000224877 CDS Human protein_coding chr17:79213407 chr17:79213403 nonsynonymous SNV . 0 17 hm5C_associated_SNPs_12794 0 0 1 0 3 NDUFAF8 chr17:79213368 3'AG 79213368 Downstream 36bp
chr17 79213403 79213403 1 + G T rs374420845 79213407 + 79213387 79213427 41 GCGTGCAGGCCTCCACGGCCCCGGGCGGCCGCCTGAGTAAG GCGTGCAGGCCTCCACTGCCCCGGGCGGCCGCCTGAGTAAG < 41bp 1 0.728207232009535 1 0.405090063810349 experiment 0.543585535980931 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFAF8 ENSG00000224877 CDS Human protein_coding chr17:79213407 chr17:79213403 nonsynonymous SNV . 0 17 hm5C_associated_SNPs_12794 0 0 1 0 3 NDUFAF8 chr17:79213395 3'AG 79213395 Downstream 9bp
chr17 79213403 79213403 1 + G T rs374420845 79213407 + 79213387 79213427 41 GCGTGCAGGCCTCCACGGCCCCGGGCGGCCGCCTGAGTAAG GCGTGCAGGCCTCCACTGCCCCGGGCGGCCGCCTGAGTAAG < 41bp 1 0.728207232009535 1 0.405090063810349 experiment 0.543585535980931 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFAF8 ENSG00000224877 CDS Human protein_coding chr17:79213407 chr17:79213403 nonsynonymous SNV . 0 17 hm5C_associated_SNPs_12794 0 0 1 0 3 NDUFAF8 chr17:79213478 5'GT 79213478 Upstream 76bp
chr17 79213403 79213403 1 + G T rs374420845 79213408 + 79213388 79213428 41 CGTGCAGGCCTCCACGGCCCCGGGCGGCCGCCTGAGTAAGG CGTGCAGGCCTCCACTGCCCCGGGCGGCCGCCTGAGTAAGG < 41bp 1 0.678142103914542 1 0.817249894142151 experiment 0.643715792170917 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFAF8 ENSG00000224877 CDS Human protein_coding chr17:79213408 chr17:79213403 nonsynonymous SNV . 0 16 hm5C_associated_SNPs_12795 0 0 1 0 3 NDUFAF8 chr17:79213368 3'AG 79213368 Downstream 36bp
chr17 79213403 79213403 1 + G T rs374420845 79213408 + 79213388 79213428 41 CGTGCAGGCCTCCACGGCCCCGGGCGGCCGCCTGAGTAAGG CGTGCAGGCCTCCACTGCCCCGGGCGGCCGCCTGAGTAAGG < 41bp 1 0.678142103914542 1 0.817249894142151 experiment 0.643715792170917 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFAF8 ENSG00000224877 CDS Human protein_coding chr17:79213408 chr17:79213403 nonsynonymous SNV . 0 16 hm5C_associated_SNPs_12795 0 0 1 0 3 NDUFAF8 chr17:79213395 3'AG 79213395 Downstream 9bp
chr17 79213403 79213403 1 + G T rs374420845 79213408 + 79213388 79213428 41 CGTGCAGGCCTCCACGGCCCCGGGCGGCCGCCTGAGTAAGG CGTGCAGGCCTCCACTGCCCCGGGCGGCCGCCTGAGTAAGG < 41bp 1 0.678142103914542 1 0.817249894142151 experiment 0.643715792170917 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFAF8 ENSG00000224877 CDS Human protein_coding chr17:79213408 chr17:79213403 nonsynonymous SNV . 0 16 hm5C_associated_SNPs_12795 0 0 1 0 3 NDUFAF8 chr17:79213478 5'GT 79213478 Upstream 76bp
chr17 79408924 79408924 1 + C T rs116138822 79408935 + 79408915 79408955 41 CTTCCCCAGCGTGGCCCGGGCCGCCCCTGCCCACCCCATGG CTTCCCCAGTGTGGCCCGGGCCGCCCCTGCCCACCCCATGG < 41bp 1 0.107210431002199 1 0.120653510093689 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79408935 chr17:79408924 synonymous SNV . 0 10 hm5C_associated_SNPs_12797 0 0 1 0 1 BAHCC1 chr17:79408857 3'AG 79408857 Downstream 68bp
chr17 79412096 79412096 1 + C T rs571452787 79412087 + 79412067 79412107 41 TGGCCCCCCATGTACGGGGGCCGGGGCCCCGCCTCTCACAT TGGCCCCCCATGTACGGGGGCCGGGGCCCTGCCTCTCACAT < 41bp 1 0.145501899852391 1 0.505963504314423 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412087 chr17:79412096 synonymous SNV . 0 30 hm5C_associated_SNPs_12804 0 0 0 0 1 BAHCC1 chr17:79412041 3'AG 79412041 Downstream 56bp
chr17 79412096 79412096 1 + C T rs571452787 79412088 + 79412068 79412108 41 GGCCCCCCATGTACGGGGGCCGGGGCCCCGCCTCTCACATG GGCCCCCCATGTACGGGGGCCGGGGCCCTGCCTCTCACATG < 41bp 1 0.357993933241989 1 0.491654396057129 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412088 chr17:79412096 synonymous SNV . 0 29 hm5C_associated_SNPs_12805 0 0 0 0 1 BAHCC1 chr17:79412041 3'AG 79412041 Downstream 56bp
chr17 79418798 79418798 1 + G A rs368653379 79418808 + 79418788 79418828 41 CACTGCCCCAGCGCAGCCGCCCACAGCCAACCCCTGCAGCG CACTGCCCCAACGCAGCCGCCCACAGCCAACCCCTGCAGCG < 41bp 1 0.14880829677415 1 0.0682482719421387 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BAHCC1 ENSG00000171282 CDS Human other chr17:79418808 chr17:79418798 nonsynonymous SNV 0.000 0 11 hm5C_associated_SNPs_12806 0 0 1 0 1 BAHCC1 chr17:79418896 5'GT 79418896 Upstream 99bp
chr17 79425714 79425714 1 + G A rs200134076 79425696 + 79425676 79425716 41 GGCCACACGCAACGCCAAGGCCATCCTGGGGAAGGGCCGGA GGCCACACGCAACGCCAAGGCCATCCTGGGGAAGGGCCAGA < 41bp 1 0.0197054257039284 1 0.029114156961441 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79425696 chr17:79425714 nonsynonymous SNV 0.708 3 39 hm5C_associated_SNPs_12807 0 0 1 0 2 BAHCC1 chr17:79425647 3'AG 79425647 Downstream 68bp
chr17 79425714 79425714 1 + G A rs200134076 79425696 + 79425676 79425716 41 GGCCACACGCAACGCCAAGGCCATCCTGGGGAAGGGCCGGA GGCCACACGCAACGCCAAGGCCATCCTGGGGAAGGGCCAGA < 41bp 1 0.0197054257039284 1 0.029114156961441 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79425696 chr17:79425714 nonsynonymous SNV 0.708 3 39 hm5C_associated_SNPs_12807 0 0 1 0 2 BAHCC1 chr17:79425751 5'GT 79425751 Upstream 38bp
chr17 79425985 79425985 1 + C T rs35206106 79425992 + 79425972 79426012 41 GCGCAGAGCAGAGCGCCGCCCTAGGTGAGCAGGGCCAGGAA GCGCAGAGCAGAGTGCCGCCCTAGGTGAGCAGGGCCAGGAA < 41bp 1 0.536901151298178 1 0.850783467292786 experiment 0.926197697403645 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79425992 chr17:79425985 synonymous SNV . 0 14 hm5C_associated_SNPs_12808 0 0 0 0 1 BAHCC1 chr17:79425995 5'GT 79425995 Upstream 11bp
chr17 79425988 79425988 1 + C T rs190483037 79425992 + 79425972 79426012 41 GCGCAGAGCAGAGCGCCGCCCTAGGTGAGCAGGGCCAGGAA GCGCAGAGCAGAGCGCTGCCCTAGGTGAGCAGGGCCAGGAA < 41bp 1 0.602721004407532 1 0.813000917434692 experiment 0.794557991184937 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79425992 chr17:79425988 synonymous SNV . 0 17 hm5C_associated_SNPs_12809 0 0 0 0 1 BAHCC1 chr17:79425995 5'GT 79425995 Upstream 8bp
chr17 79663479 79663479 1 + C T rs555406175 79663489 + 79663469 79663509 41 GGAGAAGCTTCGCCGGGCAGCCGAGGAGGCAGAGCGCCAGC GGAGAAGCTTTGCCGGGCAGCCGAGGAGGCAGAGCGCCAGC < 41bp 1 0.67224463136624 1 0.848601400852203 experiment 0.655510737267521 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79663489 chr17:79663479 nonsynonymous SNV 0.994 3 11 hm5C_associated_SNPs_12812 0 0 1 0 1 HGS chr17:79663559 5'GT 79663559 Upstream 81bp
chr17 79663508 79663508 1 + G A rs534593378 79663489 + 79663469 79663509 41 GGAGAAGCTTCGCCGGGCAGCCGAGGAGGCAGAGCGCCAGC GGAGAAGCTTCGCCGGGCAGCCGAGGAGGCAGAGCGCCAAC < 41bp 1 0.674226771218104 1 0.826051950454712 experiment 0.651546457563792 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79663489 chr17:79663508 synonymous SNV . 0 40 hm5C_associated_SNPs_12813 0 0 1 0 1 HGS chr17:79663559 5'GT 79663559 Upstream 52bp
chr17 79663981 79663981 1 + C T rs187324452 79663977 + 79663957 79663997 41 TGCACGGCGTGTACATGAGCCAGCCGGCCCCTGCCGCTGGC TGCACGGCGTGTACATGAGCCAGCTGGCCCCTGCCGCTGGC < 41bp 1 0.641070908884282 1 0.570172667503357 experiment 0.717858182231436 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79663977 chr17:79663981 nonsynonymous SNV 0.433 1 25 hm5C_associated_SNPs_12815 0 0 1 0 1 HGS chr17:79664028 5'GT 79664028 Upstream 48bp
chr17 79663981 79663981 1 + C T rs187324452 79663980 + 79663960 79664000 41 ACGGCGTGTACATGAGCCAGCCGGCCCCTGCCGCTGGCCCC ACGGCGTGTACATGAGCCAGCTGGCCCCTGCCGCTGGCCCC < 41bp 1 0.609624216742437 1 0.31233686208725 experiment 0.780751566515125 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79663980 chr17:79663981 nonsynonymous SNV 0.433 1 22 hm5C_associated_SNPs_12816 0 0 1 0 1 HGS chr17:79664028 5'GT 79664028 Upstream 48bp
chr17 79668135 79668135 1 + G T rs56058441 79668148 + 79668128 79668168 41 CTACATCGCGGGGCAGCAGCCCATGTACCAGCAGGTGAGCC CTACATCTCGGGGCAGCAGCCCATGTACCAGCAGGTGAGCC < 41bp 1 0.196904735536253 1 0.419178783893585 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79668148 chr17:79668135 nonsynonymous SNV 0.106 0 8 hm5C_associated_SNPs_12817 0 0 1 0 2 HGS chr17:79668075 3'AG 79668075 Downstream 61bp
chr17 79668135 79668135 1 + G T rs56058441 79668148 + 79668128 79668168 41 CTACATCGCGGGGCAGCAGCCCATGTACCAGCAGGTGAGCC CTACATCTCGGGGCAGCAGCCCATGTACCAGCAGGTGAGCC < 41bp 1 0.196904735536253 1 0.419178783893585 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79668148 chr17:79668135 nonsynonymous SNV 0.106 0 8 hm5C_associated_SNPs_12817 0 0 1 0 2 HGS chr17:79668161 5'GT 79668161 Upstream 27bp
chr17 79671714 79671714 1 + T C rs11546280 79671721 + 79671701 79671741 41 GGGTGGTGTGATGTCTGGGGCTGTCCCTGCTGCAGCAGCCC GGGTGGTGTGATGCCTGGGGCTGTCCCTGCTGCAGCAGCCC < 41bp 1 0.110583062504823 1 0.0519255697727203 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79671721 chr17:79671714 nonsynonymous SNV 0.023 0 14 hm5C_associated_SNPs_12818 1 0 1 0 2 MRPL12 chr17:79671663 3'AG 79671663 Downstream 52bp
chr17 79671714 79671714 1 + T C rs11546280 79671721 + 79671701 79671741 41 GGGTGGTGTGATGTCTGGGGCTGTCCCTGCTGCAGCAGCCC GGGTGGTGTGATGCCTGGGGCTGTCCCTGCTGCAGCAGCCC < 41bp 1 0.110583062504823 1 0.0519255697727203 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79671721 chr17:79671714 nonsynonymous SNV 0.023 0 14 hm5C_associated_SNPs_12818 1 0 1 0 2 MRPL12 chr17:79671746 5'GT 79671746 Upstream 33bp
chr17 80193928 80193928 1 + C G rs144588703 80193913 + 80193893 80193933 41 GGCCGTGGTGGACGAGGGCCCCACAGGCGTCAAGGCCCCTG GGCCGTGGTGGACGAGGGCCCCACAGGCGTCAAGGGCCCTG < 41bp 1 0.620538945485496 1 0.0620055496692657 experiment 0.758922109029007 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC16A3 ENSG00000141526;ENSG00000141526 exonic;splicing Human protein_coding chr17:80193913 chr17:80193928 nonsynonymous SNV 0.679 2 36 hm5C_associated_SNPs_12827 0 0 1 0 1 SLC16A3 chr17:80193859 3'AG 80193859 Downstream 70bp
chr17 80529614 80529614 1 + G A rs117692271 80529633 + 80529613 80529653 41 CGCCTTACTCCTACGCGCAGCTGATAGTTCAGGCGATTACG CACCTTACTCCTACGCGCAGCTGATAGTTCAGGCGATTACG < 41bp 1 0.0766952000192322 1 0.0701687932014465 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80529633 chr17:80529614 synonymous SNV . 0 2 hm5C_associated_SNPs_12829 0 0 1 0 1 FOXK2 chr17:80529600 3'AG 80529600 Downstream 15bp
chr17 80544015 80544015 1 + A T rs188729988 80544032 + 80544012 80544052 41 GGCAGCCGTGCTGGCCCCTCCTAAGGCAGAGGCCCAGGAGA GGCTGCCGTGCTGGCCCCTCCTAAGGCAGAGGCCCAGGAGA < 41bp 1 0.455748064574641 1 0.746717572212219 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80544032 chr17:80544015 synonymous SNV . 0 4 hm5C_associated_SNPs_12830 0 0 1 0 1 FOXK2 chr17:80544076 5'GT 80544076 Upstream 62bp
chr17 80544018 80544018 1 + C T rs11558342 80544032 + 80544012 80544052 41 GGCAGCCGTGCTGGCCCCTCCTAAGGCAGAGGCCCAGGAGA GGCAGCTGTGCTGGCCCCTCCTAAGGCAGAGGCCCAGGAGA < 41bp 1 0.418117781693554 1 0.757814168930054 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80544032 chr17:80544018 synonymous SNV . 0 7 hm5C_associated_SNPs_12831 0 0 1 0 1 FOXK2 chr17:80544076 5'GT 80544076 Upstream 59bp
chr17 80558010 80558010 1 + A G rs145717279 80558002 + 80557982 80558022 41 ACCTGCTTCTCAGAGCATCACGGGGCCCACCAAGAAGTGCC ACCTGCTTCTCAGAGCATCACGGGGCCCGCCAAGAAGTGCC < 41bp 1 0.526883968111419 1 0.822692036628723 experiment 0.946232063777162 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOXK2 ENSG00000141568 intronic Human protein_coding chr17:80558002 chr17:80558010 . . 0 29 hm5C_associated_SNPs_12832 0 0 0 0 1 FOXK2 chr17:80557968 3'AG 80557968 Downstream 43bp
chr17 80559252 80559252 1 + C T rs35881749 80559263 + 80559243 80559283 41 GCGCCACAACGGTGACCAGCCGGAGCAGCCGGAGCTGAAGC GCGCCACAATGGTGACCAGCCGGAGCAGCCGGAGCTGAAGC < 41bp 1 0.740512317644083 1 0.865359306335449 experiment 0.518975364711834 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80559263 chr17:80559252 synonymous SNV . 0 10 hm5C_associated_SNPs_12833 0 0 1 0 1 FOXK2 chr17:80559179 3'AG 80559179 Downstream 74bp
chr17 80559252 80559252 1 + C T rs35881749 80559268 + 80559248 80559288 41 ACAACGGTGACCAGCCGGAGCAGCCGGAGCTGAAGCGGATC ACAATGGTGACCAGCCGGAGCAGCCGGAGCTGAAGCGGATC < 41bp 1 0.253035510383254 1 0.400786817073822 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80559268 chr17:80559252 synonymous SNV . 0 5 hm5C_associated_SNPs_12834 0 0 1 0 1 FOXK2 chr17:80559179 3'AG 80559179 Downstream 74bp
chr17 80559266 80559266 1 + A C rs35659703 80559263 + 80559243 80559283 41 GCGCCACAACGGTGACCAGCCGGAGCAGCCGGAGCTGAAGC GCGCCACAACGGTGACCAGCCGGCGCAGCCGGAGCTGAAGC < 41bp 1 0.789873536089462 1 0.906006753444672 experiment 0.420252927821077 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80559263 chr17:80559266 nonsynonymous SNV 0.069 2 24 hm5C_associated_SNPs_12835 0 0 1 0 1 FOXK2 chr17:80559179 3'AG 80559179 Downstream 88bp
chr17 80559266 80559266 1 + A C rs35659703 80559268 + 80559248 80559288 41 ACAACGGTGACCAGCCGGAGCAGCCGGAGCTGAAGCGGATC ACAACGGTGACCAGCCGGCGCAGCCGGAGCTGAAGCGGATC < 41bp 1 0.260609093870502 1 0.340181291103363 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80559268 chr17:80559266 nonsynonymous SNV 0.069 2 19 hm5C_associated_SNPs_12836 0 0 1 0 1 FOXK2 chr17:80559179 3'AG 80559179 Downstream 88bp
chr17 80559266 80559266 1 + A C rs35659703 80559277 + 80559257 80559297 41 ACCAGCCGGAGCAGCCGGAGCTGAAGCGGATCAAGACAGAA ACCAGCCGGCGCAGCCGGAGCTGAAGCGGATCAAGACAGAA < 41bp 1 0.621823136522008 1 0.486319988965988 experiment 0.756353726955984 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80559277 chr17:80559266 nonsynonymous SNV 0.069 2 10 hm5C_associated_SNPs_12837 0 0 1 0 1 FOXK2 chr17:80559179 3'AG 80559179 Downstream 88bp
chr17 80559272 80559272 1 + C T rs35832203 80559263 + 80559243 80559283 41 GCGCCACAACGGTGACCAGCCGGAGCAGCCGGAGCTGAAGC GCGCCACAACGGTGACCAGCCGGAGCAGCTGGAGCTGAAGC < 41bp 1 0.703967621095882 1 0.850221633911133 experiment 0.592064757808236 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80559263 chr17:80559272 nonsynonymous SNV 0.047 3 30 hm5C_associated_SNPs_12838 0 0 1 0 1 FOXK2 chr17:80559179 3'AG 80559179 Downstream 94bp
chr17 80559272 80559272 1 + C T rs35832203 80559268 + 80559248 80559288 41 ACAACGGTGACCAGCCGGAGCAGCCGGAGCTGAAGCGGATC ACAACGGTGACCAGCCGGAGCAGCTGGAGCTGAAGCGGATC < 41bp 1 0.340273880728364 1 0.52760374546051 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80559268 chr17:80559272 nonsynonymous SNV 0.047 3 25 hm5C_associated_SNPs_12839 0 0 1 0 1 FOXK2 chr17:80559179 3'AG 80559179 Downstream 94bp
chr17 80559272 80559272 1 + C T rs35832203 80559277 + 80559257 80559297 41 ACCAGCCGGAGCAGCCGGAGCTGAAGCGGATCAAGACAGAA ACCAGCCGGAGCAGCTGGAGCTGAAGCGGATCAAGACAGAA < 41bp 1 0.600263007473499 1 0.476087301969528 experiment 0.799473985053001 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80559277 chr17:80559272 nonsynonymous SNV 0.047 3 16 hm5C_associated_SNPs_12840 0 0 1 0 1 FOXK2 chr17:80559179 3'AG 80559179 Downstream 94bp
chr17 80680760 80680760 1 + C A rs191683466 80680754 + 80680734 80680774 41 TGGTGACGTGCTGTGGATACCTCCCCCAGGTGAGTGCACGG TGGTGACGTGCTGTGGATACCTCCCCAAGGTGAGTGCACGG < 41bp 1 0.483227080955001 1 0.476396709680557 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80680754 chr17:80680760 nonsynonymous SNV 0.996 2 27 hm5C_associated_SNPs_12843 0 0 1 0 2 FN3KRP chr17:80680680 3'AG 80680680 Downstream 81bp
chr17 80680760 80680760 1 + C A rs191683466 80680754 + 80680734 80680774 41 TGGTGACGTGCTGTGGATACCTCCCCCAGGTGAGTGCACGG TGGTGACGTGCTGTGGATACCTCCCCAAGGTGAGTGCACGG < 41bp 1 0.483227080955001 1 0.476396709680557 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80680754 chr17:80680760 nonsynonymous SNV 0.996 2 27 hm5C_associated_SNPs_12843 0 0 1 0 2 FN3KRP chr17:80680762 5'GT 80680762 Upstream 3bp
chr18 633346 633346 1 + G A rs114382609 633344 + 633324 633364 41 AAGATGTTACCTGGGCAGGACAGAGGACTGTGTGGGGAACT AAGATGTTACCTGGGCAGGACAAAGGACTGTGTGGGGAACT < 41bp 1 0.336541521992883 1 0.357373863458633 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CLUL1 ENSG00000079101 CDS Human protein_coding chr18:633344 chr18:633346 nonsynonymous SNV 0.041 0 23 hm5C_associated_SNPs_12849 0 0 0 0 2 CLUL1 chr18:633298 3'AG 633298 Downstream 49bp
chr18 633346 633346 1 + G A rs114382609 633344 + 633324 633364 41 AAGATGTTACCTGGGCAGGACAGAGGACTGTGTGGGGAACT AAGATGTTACCTGGGCAGGACAAAGGACTGTGTGGGGAACT < 41bp 1 0.336541521992883 1 0.357373863458633 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CLUL1 ENSG00000079101 CDS Human protein_coding chr18:633344 chr18:633346 nonsynonymous SNV 0.041 0 23 hm5C_associated_SNPs_12849 0 0 0 0 2 CLUL1 chr18:633435 5'GT 633435 Upstream 90bp
chr18 633347 633347 1 + A G rs116503012 633344 + 633324 633364 41 AAGATGTTACCTGGGCAGGACAGAGGACTGTGTGGGGAACT AAGATGTTACCTGGGCAGGACAGGGGACTGTGTGGGGAACT < 41bp 1 0.70482624363023 1 0.648531973361969 experiment 0.590347512739539 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CLUL1 ENSG00000079101 CDS Human protein_coding chr18:633344 chr18:633347 synonymous SNV . 0 24 hm5C_associated_SNPs_12850 0 0 0 0 2 CLUL1 chr18:633298 3'AG 633298 Downstream 50bp
chr18 633347 633347 1 + A G rs116503012 633344 + 633324 633364 41 AAGATGTTACCTGGGCAGGACAGAGGACTGTGTGGGGAACT AAGATGTTACCTGGGCAGGACAGGGGACTGTGTGGGGAACT < 41bp 1 0.70482624363023 1 0.648531973361969 experiment 0.590347512739539 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CLUL1 ENSG00000079101 CDS Human protein_coding chr18:633344 chr18:633347 synonymous SNV . 0 24 hm5C_associated_SNPs_12850 0 0 0 0 2 CLUL1 chr18:633435 5'GT 633435 Upstream 89bp
chr18 2656224 2656224 1 + C G rs139872818 2656205 + 2656185 2656225 41 GTCCGAGCTCGGGGACCGGCCTCTGCAGGTCGGGGAGCGCT GTCCGAGCTCGGGGACCGGCCTCTGCAGGTCGGGGAGCGGT < 41bp 1 0.480306826010291 1 0.770797848701477 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMCHD1 ENSG00000101596 CDS Human protein_coding chr18:2656205 chr18:2656224 synonymous SNV . 0 40 hm5C_associated_SNPs_12852 1 0 1 0 1 SMCHD1 chr18:2656260 5'GT 2656260 Upstream 37bp
chr18 2667005 2667005 1 + T C rs7239096 2667024 + 2667004 2667044 41 ATGCCAGTGAAGGACAAAATCCTTTGCGTAAGTATCCCATT ACGCCAGTGAAGGACAAAATCCTTTGCGTAAGTATCCCATT < 41bp 1 0.0616845924451651 1 0.125531107187271 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMCHD1 ENSG00000101596 CDS Human protein_coding chr18:2667024 chr18:2667005 synonymous SNV . 0 2 hm5C_associated_SNPs_12853 1 0 1 0 1 SMCHD1 chr18:2667030 5'GT 2667030 Upstream 26bp
chr18 9954107 9954107 1 + A G rs200828821 9954099 + 9954079 9954119 41 ACATTCGGATAAACCTGGATCAACCTCAACTGCATCCTTCA ACATTCGGATAAACCTGGATCAACCTCAGCTGCATCCTTCA < 41bp 1 0.256590997373356 1 0.239821881055832 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VAPA ENSG00000101558 CDS Human protein_coding chr18:9954099 chr18:9954107 nonsynonymous SNV 0.893 0 29 hm5C_associated_SNPs_12876 0 0 1 0 1 VAPA chr18:9954050 3'AG 9954050 Downstream 58bp
chr18 11981742 11981742 1 + A G rs578206973 11981736 + 11981716 11981756 41 GGAGGAGTGCTTCCAGGCGGCCGTGCAGCTGGCGCTGCGGG GGAGGAGTGCTTCCAGGCGGCCGTGCGGCTGGCGCTGCGGG < 41bp 1 0.381705174186054 1 0.685281693935394 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IMPA2 ENSG00000141401 CDS Human protein_coding chr18:11981736 chr18:11981742 nonsynonymous SNV 0.914 0 27 hm5C_associated_SNPs_12877 0 0 1 0 1 IMPA2 chr18:11981764 5'GT 11981764 Upstream 23bp
chr18 11981742 11981742 1 + A G rs578206973 11981737 + 11981717 11981757 41 GAGGAGTGCTTCCAGGCGGCCGTGCAGCTGGCGCTGCGGGC GAGGAGTGCTTCCAGGCGGCCGTGCGGCTGGCGCTGCGGGC < 41bp 1 0.500192804751288 1 0.53234452009201 experiment 0.999614390497424 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IMPA2 ENSG00000141401 CDS Human protein_coding chr18:11981737 chr18:11981742 nonsynonymous SNV 0.914 0 26 hm5C_associated_SNPs_12878 0 0 1 0 1 IMPA2 chr18:11981764 5'GT 11981764 Upstream 23bp
chr18 12308273 12308273 1 + G A rs11548177 12308255 + 12308235 12308275 41 CCCGCAGTTGCCGCTGTCGTCCGCAGAGCCAGTTCCTAGCG CCCGCAGTTGCCGCTGTCGTCCGCAGAGCCAGTTCCTAACG < 41bp 1 0.776633247614107 1 0.586775302886963 experiment 0.446733504771786 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TUBB6 ENSG00000176014 UTR5 Human protein_coding chr18:12308255 chr18:12308273 . . 0 39 hm5C_associated_SNPs_12880 0 0 1 0 1 TUBB6 chr18:12308348 5'GT 12308348 Upstream 76bp
chr18 12658600 12658600 1 + A G rs1062235 12658585 + 12658565 12658605 41 TTCCCTAGGCGCTGGATCGCCGAAGGTCTGGTTGAAAACTT TTCCCTAGGCGCTGGATCGCCGAAGGTCTGGTTGAGAACTT < 41bp 1 0.690575363782454 1 0.742937982082367 experiment 0.618849272435092 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMG2;SPIRE1 ENSG00000215527 CDS Human other chr18:12658585 chr18:12658600 synonymous SNV . 0 36 hm5C_associated_SNPs_12882 0 0 1 0 1 PSMG2;SPIRE1 chr18:12658573 3'AG 12658573 Downstream 28bp
chr18 12703067 12703067 1 + A G rs3809916 12703065 + 12703045 12703085 41 TCTTGCTGCCCTCGTTCTTGCCAGGGCCGCGGTTAGTCCCT TCTTGCTGCCCTCGTTCTTGCCGGGGCCGCGGTTAGTCCCT < 41bp 1 0.794284133228844 1 0.892724215984344 experiment 0.411431733542313 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMG2 ENSG00000128789 UTR5 Human protein_coding chr18:12703065 chr18:12703067 . . 0 23 hm5C_associated_SNPs_12885 0 0 1 0 1 PSMG2 chr18:12703163 5'GT 12703163 Upstream 97bp
chr18 12718593 12718593 1 + A G rs2302768 12718592 + 12718572 12718612 41 TGCCAGAGTCATTGTTCTTTCAAGCAGTCATTCATATCAGC TGCCAGAGTCATTGTTCTTTCGAGCAGTCATTCATATCAGC < 41bp 1 0.787870388608575 1 0.865334153175354 experiment 0.424259222782851 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMG2 ENSG00000128789 CDS Human protein_coding chr18:12718592 chr18:12718593 synonymous SNV . 0 22 hm5C_associated_SNPs_12886 0 0 0 0 2 PSMG2 chr18:12718516 3'AG 12718516 Downstream 78bp
chr18 12718593 12718593 1 + A G rs2302768 12718592 + 12718572 12718612 41 TGCCAGAGTCATTGTTCTTTCAAGCAGTCATTCATATCAGC TGCCAGAGTCATTGTTCTTTCGAGCAGTCATTCATATCAGC < 41bp 1 0.787870388608575 1 0.865334153175354 experiment 0.424259222782851 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMG2 ENSG00000128789 CDS Human protein_coding chr18:12718592 chr18:12718593 synonymous SNV . 0 22 hm5C_associated_SNPs_12886 0 0 0 0 2 PSMG2 chr18:12718634 5'GT 12718634 Upstream 42bp
chr18 13056666 13056666 1 + A G rs139404667 13056650 + 13056630 13056670 41 TCCTGTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCAT TCCTGTGCCGTCTGTTGGTACAAACTGTGGAATTGAGCCAT < 41bp 1 0.128188474549349 1 0.209128975868225 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056650 chr18:13056666 synonymous SNV . 0 37 hm5C_associated_SNPs_12889 0 0 1 0 1 CEP192 chr18:13056697 5'GT 13056697 Upstream 32bp
chr18 13056666 13056666 1 + A G rs139404667 13056654 + 13056634 13056674 41 GTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCATGGGA GTGCCGTCTGTTGGTACAAACTGTGGAATTGAGCCATGGGA < 41bp 1 0.324350236662257 1 0.149454295635223 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056654 chr18:13056666 synonymous SNV . 0 33 hm5C_associated_SNPs_12890 0 0 1 0 1 CEP192 chr18:13056697 5'GT 13056697 Upstream 32bp
chr18 13057655 13057655 1 + C G rs61740922 13057639 + 13057619 13057659 41 CATGCTTGCTGTGTCGGGATCGCTTCCCAGACCCTCCTCAG CATGCTTGCTGTGTCGGGATCGCTTCCCAGACCCTCGTCAG < 41bp 1 0.308382358144438 1 0.1302330493927 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13057639 chr18:13057655 nonsynonymous SNV 0.970 4 37 hm5C_associated_SNPs_12891 0 0 1 0 2 CEP192 chr18:13057584 3'AG 13057584 Downstream 72bp
chr18 13057655 13057655 1 + C G rs61740922 13057639 + 13057619 13057659 41 CATGCTTGCTGTGTCGGGATCGCTTCCCAGACCCTCCTCAG CATGCTTGCTGTGTCGGGATCGCTTCCCAGACCCTCGTCAG < 41bp 1 0.308382358144438 1 0.1302330493927 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13057639 chr18:13057655 nonsynonymous SNV 0.970 4 37 hm5C_associated_SNPs_12891 0 0 1 0 2 CEP192 chr18:13057732 5'GT 13057732 Upstream 78bp
chr18 13057658 13057658 1 + A C rs141758949 13057639 + 13057619 13057659 41 CATGCTTGCTGTGTCGGGATCGCTTCCCAGACCCTCCTCAG CATGCTTGCTGTGTCGGGATCGCTTCCCAGACCCTCCTCCG < 41bp 1 0.298998088489206 1 0.133866518735886 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13057639 chr18:13057658 nonsynonymous SNV 0.941 4 40 hm5C_associated_SNPs_12892 0 0 1 0 2 CEP192 chr18:13057584 3'AG 13057584 Downstream 75bp
chr18 13057658 13057658 1 + A C rs141758949 13057639 + 13057619 13057659 41 CATGCTTGCTGTGTCGGGATCGCTTCCCAGACCCTCCTCAG CATGCTTGCTGTGTCGGGATCGCTTCCCAGACCCTCCTCCG < 41bp 1 0.298998088489206 1 0.133866518735886 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13057639 chr18:13057658 nonsynonymous SNV 0.941 4 40 hm5C_associated_SNPs_12892 0 0 1 0 2 CEP192 chr18:13057732 5'GT 13057732 Upstream 75bp
chr18 13067905 13067905 1 + T C rs150357881 13067893 + 13067873 13067913 41 CTTATGGAGGCTGGAAAGCCCTCCCACTAAAATTGATAAAC CTTATGGAGGCTGGAAAGCCCTCCCACTAAAACTGATAAAC < 41bp 1 0.285153016649704 1 0.375934422016144 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13067893 chr18:13067905 synonymous SNV . 0 33 hm5C_associated_SNPs_12893 0 0 1 0 2 CEP192 chr18:13067830 3'AG 13067830 Downstream 76bp
chr18 13067905 13067905 1 + T C rs150357881 13067893 + 13067873 13067913 41 CTTATGGAGGCTGGAAAGCCCTCCCACTAAAATTGATAAAC CTTATGGAGGCTGGAAAGCCCTCCCACTAAAACTGATAAAC < 41bp 1 0.285153016649704 1 0.375934422016144 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13067893 chr18:13067905 synonymous SNV . 0 33 hm5C_associated_SNPs_12893 0 0 1 0 2 CEP192 chr18:13067955 5'GT 13067955 Upstream 51bp
chr18 13095654 13095654 1 + A G rs79702541 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCT < 41bp 1 0.211410962957357 1 0.232764035463333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095654 nonsynonymous SNV 0.132 0 22 hm5C_associated_SNPs_12894 0 0 1 14 1 CEP192 chr18:13095680 5'GT 13095680 Upstream 27bp
chr18 13095654 13095654 1 + A G rs79702541 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCTTC < 41bp 1 0.553290076721899 1 0.236833572387695 experiment 0.893419846556202 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095654 nonsynonymous SNV 0.132 0 20 hm5C_associated_SNPs_12895 0 0 1 14 1 CEP192 chr18:13095680 5'GT 13095680 Upstream 27bp
chr18 13760008 13760008 1 + T C rs76766210 13760006 + 13759986 13760026 41 GGCAGTAGTCCCAGAGGGGCCGTGTTCTGTCCTGCACAAAT GGCAGTAGTCCCAGAGGGGCCGCGTTCTGTCCTGCACAAAT < 41bp 1 0.643092052349602 1 0.673160791397095 experiment 0.713815895300795 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNMT ENSG00000101654 UTR3 Human protein_coding chr18:13760006 chr18:13760008 . . 0 23 hm5C_associated_SNPs_12897 0 0 1 0 1 RNMT chr18:13759941 3'AG 13759941 Downstream 68bp
chr18 19209087 19209087 1 + T A rs567962074 19209067 + 19209047 19209087 41 GAAGAGGAAGAGGACGTGGCCGTGGCAGAGGAAGAGGGGGT GAAGAGGAAGAGGACGTGGCCGTGGCAGAGGAAGAGGGGGA < 41bp 1 0.741200046394902 1 0.377096056938171 experiment 0.517599907210196 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRPD1 ENSG00000167088 CDS Human protein_coding chr18:19209067 chr18:19209087 synonymous SNV . 0 41 hm5C_associated_SNPs_12898 0 0 1 0 1 SNRPD1 chr18:19209023 3'AG 19209023 Downstream 65bp
chr18 21508192 21508192 1 + G A rs146634036 21508180 + 21508160 21508200 41 AATGATACTGTGGGAGTAACCAAAAAGTGCTCGGAAGACTG AATGATACTGTGGGAGTAACCAAAAAGTGCTCAGAAGACTG < 41bp 1 0.42401681514297 1 0.743930816650391 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21508180 chr18:21508192 synonymous SNV . 0 33 hm5C_associated_SNPs_12910 2 0 1 0 1 LAMA3 chr18:21508204 5'GT 21508204 Upstream 13bp
chr18 21594977 21594977 1 + T A rs548200876 21594978 + 21594958 21594998 41 CAACAACGGCTTCAGGGAGTCGGACCAGCTTTTCAAACAAT CAACAACGGCTTCAGGGAGACGGACCAGCTTTTCAAACAAT < 41bp 1 0.227344201557504 1 0.472558230161667 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control TTC39C ENSG00000168234 CDS Human protein_coding chr18:21594978 chr18:21594977 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_12911 0 0 1 4 1 TTC39C chr18:21595002 5'GT 21595002 Upstream 26bp
chr18 33785185 33785185 1 + A G rs667667 33785182 + 33785162 33785202 41 AGCAGCCCTGAGGTTCAGGGCCCAATCATCAATTTTAATGT AGCAGCCCTGAGGTTCAGGGCCCGATCATCAATTTTAATGT < 41bp 1 0.446507673936352 1 0.0693609714508057 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33785182 chr18:33785185 synonymous SNV . 0 24 hm5C_associated_SNPs_12929 0 0 0 0 1 MOCOS chr18:33785239 5'GT 33785239 Upstream 55bp
chr18 33785185 33785185 1 + A G rs667667 33785183 + 33785163 33785203 41 GCAGCCCTGAGGTTCAGGGCCCAATCATCAATTTTAATGTG GCAGCCCTGAGGTTCAGGGCCCGATCATCAATTTTAATGTG < 41bp 1 0.0911398415242262 1 0.0188717246055603 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33785183 chr18:33785185 synonymous SNV . 0 23 hm5C_associated_SNPs_12930 0 0 0 0 1 MOCOS chr18:33785239 5'GT 33785239 Upstream 55bp
chr18 33785185 33785185 1 + A G rs667667 33785184 + 33785164 33785204 41 CAGCCCTGAGGTTCAGGGCCCAATCATCAATTTTAATGTGC CAGCCCTGAGGTTCAGGGCCCGATCATCAATTTTAATGTGC < 41bp 1 0.0466134608544048 1 0.0270122289657593 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33785184 chr18:33785185 synonymous SNV . 0 22 hm5C_associated_SNPs_12931 0 0 0 0 1 MOCOS chr18:33785239 5'GT 33785239 Upstream 55bp
chr18 34289081 34289081 1 + G A rs139884505 34289065 + 34289045 34289085 41 TTGTCTCCACCAGCAAGTGCCGGGGATCCTGAACCCGAATC TTGTCTCCACCAGCAAGTGCCGGGGATCCTGAACCCAAATC < 41bp 1 0.577981241104862 1 0.825187921524048 experiment 0.844037517790276 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34289065 chr18:34289081 nonsynonymous SNV 0.099 0 37 hm5C_associated_SNPs_12932 0 0 0 0 1 FHOD3 chr18:34289058 3'AG 34289058 Downstream 24bp
chr18 34289285 34289285 1 + G A rs61735998 34289293 + 34289273 34289313 41 TCTGCCTCCAGCGTCTCGTCCTCCAGCAGCACGTTGGAGAG TCTGCCTCCAGCATCTCGTCCTCCAGCAGCACGTTGGAGAG < 41bp 1 0.700034171157731 1 0.967357218265533 experiment 0.599931657684539 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34289293 chr18:34289285 nonsynonymous SNV 0.993 0 13 hm5C_associated_SNPs_12933 0 1 0 0 1 FHOD3 chr18:34289354 5'GT 34289354 Upstream 70bp
chr18 34349252 34349252 1 + G A rs145954630 34349255 + 34349235 34349275 41 TAGTTCCTGGACTATGGGAACTGATGACTCGCCCAATGTCA TAGTTCCTGGACTATGGAAACTGATGACTCGCCCAATGTCA < 41bp 1 0.194524662995542 1 0.169064372777939 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34349255 chr18:34349252 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_12934 0 0 0 0 1 FHOD3 chr18:34349228 3'AG 34349228 Downstream 25bp
chr18 34349264 34349264 1 + C G rs187008252 34349255 + 34349235 34349275 41 TAGTTCCTGGACTATGGGAACTGATGACTCGCCCAATGTCA TAGTTCCTGGACTATGGGAACTGATGACTGGCCCAATGTCA < 41bp 1 0.125332336336963 1 0.152856141328812 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34349255 chr18:34349264 nonsynonymous SNV 0.993 3 30 hm5C_associated_SNPs_12935 0 0 0 0 1 FHOD3 chr18:34349228 3'AG 34349228 Downstream 37bp
chr18 44626630 44626630 1 + T G rs2289130 44626629 + 44626609 44626649 41 TTTTTGGCTGTTTCAGGAGACTGAGGGCTACTCAGGCTCAG TTTTTGGCTGTTTCAGGAGACGGAGGGCTACTCAGGCTCAG < 41bp 1 0.794160625620293 1 0.900807857513428 experiment 0.411678748759413 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control KATNAL2 ENSG00000167216 CDS Human protein_coding chr18:44626629 chr18:44626630 synonymous SNV . 0 22 hm5C_associated_SNPs_12936 0 0 0 0 2 KATNAL2 chr18:44626625 3'AG 44626625 Downstream 6bp
chr18 44626630 44626630 1 + T G rs2289130 44626629 + 44626609 44626649 41 TTTTTGGCTGTTTCAGGAGACTGAGGGCTACTCAGGCTCAG TTTTTGGCTGTTTCAGGAGACGGAGGGCTACTCAGGCTCAG < 41bp 1 0.794160625620293 1 0.900807857513428 experiment 0.411678748759413 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control KATNAL2 ENSG00000167216 CDS Human protein_coding chr18:44626629 chr18:44626630 synonymous SNV . 0 22 hm5C_associated_SNPs_12936 0 0 0 0 2 KATNAL2 chr18:44626727 5'GT 44626727 Upstream 98bp
chr18 46284715 46284715 1 + G A rs190509322 46284696 + 46284676 46284716 41 AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGCGG AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGCAG < 41bp 1 0.500561249647716 1 0.111291199922562 experiment 0.998877500704567 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284696 chr18:46284715 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_12939 0 0 0 0 2 CTIF chr18:46284776 5'GT 46284776 Upstream 62bp
chr18 46284715 46284715 1 + G A rs190509322 46284696 + 46284676 46284716 41 AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGCGG AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGCAG < 41bp 1 0.500561249647716 1 0.111291199922562 experiment 0.998877500704567 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284696 chr18:46284715 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_12939 0 0 0 0 2 CTIF chr18:46284782 5'GT 46284782 Upstream 68bp
chr18 48581278 48581278 1 + A G rs145805120 48581284 + 48581264 48581304 41 GCATCGACAGAGACATACAGCACCCCAGCTCTGTTAGCCCC GCATCGACAGAGACGTACAGCACCCCAGCTCTGTTAGCCCC < 41bp 1 0.348553114620677 1 0.217484474182129 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48581284 chr18:48581278 synonymous SNV . 0 15 hm5C_associated_SNPs_12951 2 0 1 0 1 SMAD4 chr18:48581363 5'GT 48581363 Upstream 86bp
chr18 55996244 55996244 1 + C G rs202231187 55996248 + 55996228 55996268 41 GACGTGTCCTCGGAGTCGGACAATAACATCAGACAGATCAA GACGTGTCCTCGGAGTGGGACAATAACATCAGACAGATCAA < 41bp 1 0.269664525881882 1 0.309290558099747 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NEDD4L ENSG00000049759 CDS Human protein_coding chr18:55996248 chr18:55996244 nonsynonymous SNV 0.743 4 17 hm5C_associated_SNPs_12956 0 0 1 0 1 NEDD4L chr18:55996227 3'AG 55996227 Downstream 18bp
chr18 60384459 60384459 1 + T A rs190856530 60384441 + 60384421 60384461 41 TTGGGGAGCTGTGGAGGGTGCAGGAGGAAGGCATGGACTCG TTGGGGAGCTGTGGAGGGTGCAGGAGGAAGGCATGGACACG < 41bp 1 0.766316454424899 1 0.717721700668335 experiment 0.467367091150202 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PHLPP1 ENSG00000081913 CDS Human protein_coding chr18:60384441 chr18:60384459 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_12964 0 0 1 0 1 PHLPP1 chr18:60384492 5'GT 60384492 Upstream 34bp
chr18 72167184 72167184 1 + C A rs191869036 72167174 + 72167154 72167194 41 GTTGCTCTTCCTTCCAAGAACCTTCGAGATCTGCGGTCTGG GTTGCTCTTCCTTCCAAGAACCTTCGAGATATGCGGTCTGG < 41bp 1 0.0947659958546884 1 0.0595845878124237 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CNDP2 ENSG00000133313 UTR5 Human protein_coding chr18:72167174 chr18:72167184 . . 0 31 hm5C_associated_SNPs_12965 0 0 1 0 3 CNDP2 chr18:72167117 3'AG 72167117 Downstream 68bp
chr18 72167184 72167184 1 + C A rs191869036 72167174 + 72167154 72167194 41 GTTGCTCTTCCTTCCAAGAACCTTCGAGATCTGCGGTCTGG GTTGCTCTTCCTTCCAAGAACCTTCGAGATATGCGGTCTGG < 41bp 1 0.0947659958546884 1 0.0595845878124237 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CNDP2 ENSG00000133313 UTR5 Human protein_coding chr18:72167174 chr18:72167184 . . 0 31 hm5C_associated_SNPs_12965 0 0 1 0 3 CNDP2 chr18:72167172 3'AG 72167172 Downstream 13bp
chr18 72167184 72167184 1 + C A rs191869036 72167174 + 72167154 72167194 41 GTTGCTCTTCCTTCCAAGAACCTTCGAGATCTGCGGTCTGG GTTGCTCTTCCTTCCAAGAACCTTCGAGATATGCGGTCTGG < 41bp 1 0.0947659958546884 1 0.0595845878124237 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CNDP2 ENSG00000133313 UTR5 Human protein_coding chr18:72167174 chr18:72167184 . . 0 31 hm5C_associated_SNPs_12965 0 0 1 0 3 CNDP2 chr18:72167268 5'GT 72167268 Upstream 85bp
chr18 74625769 74625769 1 + C T rs184404327 74625764 + 74625744 74625784 41 TGAAGCAGCATGTGCGGTCGCACACCGGGGAAAAGCCCTAC TGAAGCAGCATGTGCGGTCGCACACTGGGGAAAAGCCCTAC < 41bp 1 0.406348927508885 1 0.113185465335846 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74625764 chr18:74625769 synonymous SNV . 0 26 hm5C_associated_SNPs_12966 0 0 0 0 2 ZNF236 chr18:74625703 3'AG 74625703 Downstream 67bp
chr18 74625769 74625769 1 + C T rs184404327 74625764 + 74625744 74625784 41 TGAAGCAGCATGTGCGGTCGCACACCGGGGAAAAGCCCTAC TGAAGCAGCATGTGCGGTCGCACACTGGGGAAAAGCCCTAC < 41bp 1 0.406348927508885 1 0.113185465335846 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74625764 chr18:74625769 synonymous SNV . 0 26 hm5C_associated_SNPs_12966 0 0 0 0 2 ZNF236 chr18:74625854 5'GT 74625854 Upstream 86bp
chr18 74639277 74639277 1 + A G rs181512072 74639258 + 74639238 74639278 41 TCCAAGCATTCTGCAGCAGACGCTACAGCAGGGCAACCTAT TCCAAGCATTCTGCAGCAGACGCTACAGCAGGGCAACCTGT < 41bp 1 0.379413592538721 1 0.230005770921707 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74639258 chr18:74639277 synonymous SNV . 0 40 hm5C_associated_SNPs_12967 0 0 1 0 1 ZNF236 chr18:74639233 3'AG 74639233 Downstream 45bp
chr18 77728107 77728107 1 + G A rs143104176 77728106 + 77728086 77728126 41 TACTGGAAGAAATGGGAAATCGCATTGAGGACTTACAGAAG TACTGGAAGAAATGGGAAATCACATTGAGGACTTACAGAAG < 41bp 1 0.5979742852844 1 0.399438917636871 experiment 0.8040514294312 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSBP1L1 ENSG00000226742 CDS Human protein_coding chr18:77728106 chr18:77728107 nonsynonymous SNV 0.668 1 22 hm5C_associated_SNPs_12972 0 0 1 0 1 HSBP1L1 chr18:77728183 5'GT 77728183 Upstream 77bp
chr19 579627 579627 1 + C T rs1803202 579629 + 579609 579649 41 CGTGGTGCTGAAGGAGGACGCGCTGCCCGGCCAGAAAACGG CGTGGTGCTGAAGGAGGATGCGCTGCCCGGCCAGAAAACGG < 41bp 1 0.449953145804199 1 0.178239107131958 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579629 chr19:579627 synonymous SNV . 0 19 hm5C_associated_SNPs_12996 0 0 1 0 1 BSG chr19:579656 5'GT 579656 Upstream 30bp
chr19 579627 579627 1 + C T rs1803202 579636 + 579616 579656 41 CTGAAGGAGGACGCGCTGCCCGGCCAGAAAACGGAGTTCAA CTGAAGGAGGATGCGCTGCCCGGCCAGAAAACGGAGTTCAA < 41bp 1 0.475297960058588 1 0.644946932792664 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579636 chr19:579627 synonymous SNV . 0 12 hm5C_associated_SNPs_12997 0 0 1 0 1 BSG chr19:579656 5'GT 579656 Upstream 30bp
chr19 579630 579630 1 + G A rs61729580 579629 + 579609 579649 41 CGTGGTGCTGAAGGAGGACGCGCTGCCCGGCCAGAAAACGG CGTGGTGCTGAAGGAGGACGCACTGCCCGGCCAGAAAACGG < 41bp 1 0.406631315236524 1 0.228168070316315 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579629 chr19:579630 synonymous SNV . 0 22 hm5C_associated_SNPs_12998 0 0 1 0 1 BSG chr19:579656 5'GT 579656 Upstream 27bp
chr19 579630 579630 1 + G A rs61729580 579636 + 579616 579656 41 CTGAAGGAGGACGCGCTGCCCGGCCAGAAAACGGAGTTCAA CTGAAGGAGGACGCACTGCCCGGCCAGAAAACGGAGTTCAA < 41bp 1 0.53212018261548 1 0.744309365749359 experiment 0.93575963476904 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579636 chr19:579630 synonymous SNV . 0 15 hm5C_associated_SNPs_12999 0 0 1 0 1 BSG chr19:579656 5'GT 579656 Upstream 27bp
chr19 579630 579630 1 + G A rs61729580 579640 + 579620 579660 41 AGGAGGACGCGCTGCCCGGCCAGAAAACGGAGTTCAAGTGA AGGAGGACGCACTGCCCGGCCAGAAAACGGAGTTCAAGTGA < 41bp 1 0.769564876538532 1 0.482612878084183 experiment 0.460870246922935 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579640 chr19:579630 synonymous SNV . 0 11 hm5C_associated_SNPs_13000 0 0 1 0 1 BSG chr19:579656 5'GT 579656 Upstream 27bp
chr19 580388 580388 1 + C A rs2229664 580385 + 580365 580405 41 TGCTGTGGTTGCAGGGTGGACTCCGACGACCAGTGGGGAGA TGCTGTGGTTGCAGGGTGGACTCAGACGACCAGTGGGGAGA < 41bp 1 0.473607801111871 1 0.284375190734863 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:580385 chr19:580388 synonymous SNV . 0 24 hm5C_associated_SNPs_13001 0 0 1 1 1 BSG chr19:580461 5'GT 580461 Upstream 74bp
chr19 580388 580388 1 + C A rs2229664 580387 + 580367 580407 41 CTGTGGTTGCAGGGTGGACTCCGACGACCAGTGGGGAGAGT CTGTGGTTGCAGGGTGGACTCAGACGACCAGTGGGGAGAGT < 41bp 1 0.494862987823132 1 0.40036016702652 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:580387 chr19:580388 synonymous SNV . 0 22 hm5C_associated_SNPs_13002 0 0 1 1 1 BSG chr19:580461 5'GT 580461 Upstream 74bp
chr19 580388 580388 1 + C A rs2229664 580394 + 580374 580414 41 TGCAGGGTGGACTCCGACGACCAGTGGGGAGAGTACTCCTG TGCAGGGTGGACTCAGACGACCAGTGGGGAGAGTACTCCTG < 41bp 1 0.444087628296082 1 0.143410235643387 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:580394 chr19:580388 synonymous SNV . 0 15 hm5C_associated_SNPs_13003 0 0 1 1 1 BSG chr19:580461 5'GT 580461 Upstream 74bp
chr19 580389 580389 1 + G C rs202113312 580385 + 580365 580405 41 TGCTGTGGTTGCAGGGTGGACTCCGACGACCAGTGGGGAGA TGCTGTGGTTGCAGGGTGGACTCCCACGACCAGTGGGGAGA < 41bp 1 0.278959497568888 1 0.117996662855148 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:580385 chr19:580389 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_13004 0 0 1 1 1 BSG chr19:580461 5'GT 580461 Upstream 73bp
chr19 580389 580389 1 + G C rs202113312 580387 + 580367 580407 41 CTGTGGTTGCAGGGTGGACTCCGACGACCAGTGGGGAGAGT CTGTGGTTGCAGGGTGGACTCCCACGACCAGTGGGGAGAGT < 41bp 1 0.194757640469809 1 0.0798741281032562 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:580387 chr19:580389 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_13005 0 0 1 1 1 BSG chr19:580461 5'GT 580461 Upstream 73bp
chr19 580389 580389 1 + G C rs202113312 580394 + 580374 580414 41 TGCAGGGTGGACTCCGACGACCAGTGGGGAGAGTACTCCTG TGCAGGGTGGACTCCCACGACCAGTGGGGAGAGTACTCCTG < 41bp 1 0.426173867692407 1 0.192533791065216 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:580394 chr19:580389 nonsynonymous SNV 0.002 0 16 hm5C_associated_SNPs_13006 0 0 1 1 1 BSG chr19:580461 5'GT 580461 Upstream 73bp
chr19 582775 582775 1 + A C rs8637 582773 + 582753 582793 41 GCCCGAGGACGCTCCCTGCTCCACGTCTGCGCCGCCGCCGG GCCCGAGGACGCTCCCTGCTCCCCGTCTGCGCCGCCGCCGG < 41bp 1 0.736469412878018 1 0.0684731006622314 experiment 0.527061174243963 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BSG ENSG00000172270 UTR3 Human protein_coding chr19:582773 chr19:582775 . . 0 23 hm5C_associated_SNPs_13007 0 0 1 0 1 BSG chr19:582750 3'AG 582750 Downstream 26bp
chr19 582775 582775 1 + A C rs8637 582774 + 582754 582794 41 CCCGAGGACGCTCCCTGCTCCACGTCTGCGCCGCCGCCGGA CCCGAGGACGCTCCCTGCTCCCCGTCTGCGCCGCCGCCGGA < 41bp 1 0.481645059151555 1 0.0442714691162109 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BSG ENSG00000172270 UTR3 Human protein_coding chr19:582774 chr19:582775 . . 0 22 hm5C_associated_SNPs_13008 0 0 1 0 1 BSG chr19:582750 3'AG 582750 Downstream 26bp
chr19 582775 582775 1 + A C rs8637 582776 + 582756 582796 41 CGAGGACGCTCCCTGCTCCACGTCTGCGCCGCCGCCGGAGT CGAGGACGCTCCCTGCTCCCCGTCTGCGCCGCCGCCGGAGT < 41bp 1 0.368837897384142 1 0.173338949680328 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BSG ENSG00000172270 UTR3 Human protein_coding chr19:582776 chr19:582775 . . 0 20 hm5C_associated_SNPs_13009 0 0 1 0 1 BSG chr19:582750 3'AG 582750 Downstream 26bp
chr19 613886 613886 1 + G A rs555844825 613878 + 613858 613898 41 GCCTGCTCACCCGGGGCCGCCGCACGGCGAGCGTGCGGGCT GCCTGCTCACCCGGGGCCGCCGCACGGCAAGCGTGCGGGCT < 41bp 1 0.241577624831323 1 0.186194390058517 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HCN2 ENSG00000099822 CDS Human protein_coding chr19:613878 chr19:613886 synonymous SNV . 0 29 hm5C_associated_SNPs_13013 0 0 0 0 1 HCN2 chr19:613852 3'AG 613852 Downstream 35bp
chr19 613898 613898 1 + T A rs1054786 613878 + 613858 613898 41 GCCTGCTCACCCGGGGCCGCCGCACGGCGAGCGTGCGGGCT GCCTGCTCACCCGGGGCCGCCGCACGGCGAGCGTGCGGGCA < 41bp 1 0.278697459897317 1 0.261186063289642 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HCN2 ENSG00000099822 CDS Human protein_coding chr19:613878 chr19:613898 synonymous SNV . 0 41 hm5C_associated_SNPs_13014 0 0 0 0 1 HCN2 chr19:613852 3'AG 613852 Downstream 47bp
chr19 680874 680874 1 + C G rs34067740 680867 + 680847 680887 41 AGTGGGCCTCTGGGGGCTCACACTGGGCAAGAGGTATGTGG AGTGGGCCTCTGGGGGCTCACACTGGGGAAGAGGTATGTGG < 41bp 1 0.201109667383876 1 0.267504632472992 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FSTL3 ENSG00000070404 intronic Human protein_coding chr19:680867 chr19:680874 . . 0 28 hm5C_associated_SNPs_13015 0 0 0 0 1 FSTL3 chr19:680879 5'GT 680879 Upstream 6bp
chr19 681739 681739 1 + G A rs144896081 681756 + 681736 681776 41 CCCGAGGCCCCCCATCATCCCCTGTTATTTATTGCCACAGC CCCAAGGCCCCCCATCATCCCCTGTTATTTATTGCCACAGC < 41bp 1 0.138836875261104 1 0.04579958319664 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FSTL3 ENSG00000070404 UTR3 Human protein_coding chr19:681756 chr19:681739 . . 0 4 hm5C_associated_SNPs_13016 0 0 1 0 1 FSTL3 chr19:681650 3'AG 681650 Downstream 90bp
chr19 681747 681747 1 + C A rs373498221 681756 + 681736 681776 41 CCCGAGGCCCCCCATCATCCCCTGTTATTTATTGCCACAGC CCCGAGGCCCCACATCATCCCCTGTTATTTATTGCCACAGC < 41bp 1 0.126420539278106 1 0.0314669609069824 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FSTL3 ENSG00000070404 UTR3 Human protein_coding chr19:681756 chr19:681747 . 0.000 0 12 hm5C_associated_SNPs_13017 0 0 1 0 1 FSTL3 chr19:681650 3'AG 681650 Downstream 98bp
chr19 763592 763592 1 + C G rs148858298 763607 + 763587 763627 41 CTGAGCCTCGGGATGGGGCGCCCACCCCCTGCCCTGCCCTG CTGAGGCTCGGGATGGGGCGCCCACCCCCTGCCCTGCCCTG < 41bp 1 0.107212036950208 1 0.133692026138306 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 UTR3 Human protein_coding chr19:763607 chr19:763592 . . 0 6 hm5C_associated_SNPs_13030 0 0 0 0 1 MISP chr19:763501 3'AG 763501 Downstream 92bp
chr19 797433 797433 1 + C T rs575861492 797419 + 797399 797439 41 GTCTCCGCCATTTTGTGAGTCTATAACTCGGAGCCGTTGGG GTCTCCGCCATTTTGTGAGTCTATAACTCGGAGCTGTTGGG < 41bp 1 0.246143353108576 1 0.253291189670563 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:797419 chr19:797433 unknown . 0 35 hm5C_associated_SNPs_13032 0 0 1 0 1 PTBP1 chr19:797505 5'GT 797505 Upstream 73bp
chr19 797433 797433 1 + C T rs575861492 797441 + 797421 797461 41 ATAACTCGGAGCCGTTGGGTCGGTTCCTGCTATTCCGGCGC ATAACTCGGAGCTGTTGGGTCGGTTCCTGCTATTCCGGCGC < 41bp 1 0.425371823818148 1 0.243668615818024 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:797441 chr19:797433 unknown . 0 13 hm5C_associated_SNPs_13033 0 0 1 0 1 PTBP1 chr19:797505 5'GT 797505 Upstream 73bp
chr19 797439 797439 1 + G A rs199728719 797419 + 797399 797439 41 GTCTCCGCCATTTTGTGAGTCTATAACTCGGAGCCGTTGGG GTCTCCGCCATTTTGTGAGTCTATAACTCGGAGCCGTTGGA < 41bp 1 0.251057913651455 1 0.307790338993073 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:797419 chr19:797439 unknown . 0 41 hm5C_associated_SNPs_13034 0 0 1 0 1 PTBP1 chr19:797505 5'GT 797505 Upstream 67bp
chr19 797439 797439 1 + G A rs199728719 797441 + 797421 797461 41 ATAACTCGGAGCCGTTGGGTCGGTTCCTGCTATTCCGGCGC ATAACTCGGAGCCGTTGGATCGGTTCCTGCTATTCCGGCGC < 41bp 1 0.496547540475355 1 0.395275056362152 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:797441 chr19:797439 unknown . 0 19 hm5C_associated_SNPs_13035 0 0 1 0 1 PTBP1 chr19:797505 5'GT 797505 Upstream 67bp
chr19 804184 804184 1 + C T rs61757784 804178 + 804158 804198 41 CTGCCCTTTGGGAAGGTCACCAACCTCCTGATGCTGAAGGG CTGCCCTTTGGGAAGGTCACCAACCTTCTGATGCTGAAGGG < 41bp 1 0.312660434783541 1 0.148214608430862 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804178 chr19:804184 synonymous SNV . 0 27 hm5C_associated_SNPs_13036 0 0 1 0 1 PTBP1 chr19:804208 5'GT 804208 Upstream 25bp
chr19 806430 806430 1 + C G rs199836672 806441 + 806421 806461 41 GAACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGG GAACGTCCAGGGCGCCCTGGCCCCCCTGGCCATCCCCTCGG < 41bp 1 0.309493253777542 1 0.0518009960651398 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806441 chr19:806430 nonsynonymous SNV 0.040 0 10 hm5C_associated_SNPs_13037 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 23bp
chr19 806430 806430 1 + C G rs199836672 806442 + 806422 806462 41 AACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGC AACGTCCAGGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGC < 41bp 1 0.416822649247117 1 0.107408165931702 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806442 chr19:806430 nonsynonymous SNV 0.040 0 9 hm5C_associated_SNPs_13038 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 23bp
chr19 806430 806430 1 + C G rs199836672 806443 + 806423 806463 41 ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCG ACGTCCAGGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCG < 41bp 1 0.485481136715036 1 0.0404009819030762 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806443 chr19:806430 nonsynonymous SNV 0.040 0 8 hm5C_associated_SNPs_13039 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 23bp
chr19 806430 806430 1 + C G rs199836672 806444 + 806424 806464 41 CGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG CGTCCAGGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG < 41bp 1 0.540910044378857 1 0.210612237453461 experiment 0.918179911242286 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806444 chr19:806430 nonsynonymous SNV 0.040 0 7 hm5C_associated_SNPs_13040 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 23bp
chr19 806430 806430 1 + C G rs199836672 806445 + 806425 806465 41 GTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGC GTCCAGGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGC < 41bp 1 0.552309668890344 1 0.412158727645874 experiment 0.895380662219311 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806445 chr19:806430 nonsynonymous SNV 0.040 0 6 hm5C_associated_SNPs_13041 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 23bp
chr19 806430 806430 1 + C G rs199836672 806446 + 806426 806466 41 TCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCG TCCAGGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCG < 41bp 1 0.78603032915095 1 0.430144220590591 experiment 0.427939341698101 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806446 chr19:806430 nonsynonymous SNV 0.040 0 5 hm5C_associated_SNPs_13042 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 23bp
chr19 806430 806430 1 + C G rs199836672 806450 + 806430 806470 41 CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGG GGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGG < 41bp 1 0.0789187667994129 1 0.122403532266617 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806450 chr19:806430 nonsynonymous SNV 0.040 0 1 hm5C_associated_SNPs_13043 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 23bp
chr19 806451 806451 1 + C T rs11549887 806441 + 806421 806461 41 GAACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGG GAACGTCCACGGCGCCCTGGCCCCCCTGGCTATCCCCTCGG < 41bp 1 0.242405543547542 1 0.0482955276966095 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806441 chr19:806451 synonymous SNV . 0 31 hm5C_associated_SNPs_13044 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 44bp
chr19 806451 806451 1 + C T rs11549887 806442 + 806422 806462 41 AACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGC AACGTCCACGGCGCCCTGGCCCCCCTGGCTATCCCCTCGGC < 41bp 1 0.307606061436992 1 0.0644577145576477 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806442 chr19:806451 synonymous SNV . 0 30 hm5C_associated_SNPs_13045 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 44bp
chr19 806451 806451 1 + C T rs11549887 806443 + 806423 806463 41 ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCG ACGTCCACGGCGCCCTGGCCCCCCTGGCTATCCCCTCGGCG < 41bp 1 0.419981915413716 1 0.0258196592330933 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806443 chr19:806451 synonymous SNV . 0 29 hm5C_associated_SNPs_13046 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 44bp
chr19 806451 806451 1 + C T rs11549887 806444 + 806424 806464 41 CGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG CGTCCACGGCGCCCTGGCCCCCCTGGCTATCCCCTCGGCGG < 41bp 1 0.496027304243967 1 0.311295688152313 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806444 chr19:806451 synonymous SNV . 0 28 hm5C_associated_SNPs_13047 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 44bp
chr19 806451 806451 1 + C T rs11549887 806445 + 806425 806465 41 GTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGC GTCCACGGCGCCCTGGCCCCCCTGGCTATCCCCTCGGCGGC < 41bp 1 0.588880291385656 1 0.28633064031601 experiment 0.822239417228687 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806445 chr19:806451 synonymous SNV . 0 27 hm5C_associated_SNPs_13048 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 44bp
chr19 806451 806451 1 + C T rs11549887 806450 + 806430 806470 41 CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGG CGGCGCCCTGGCCCCCCTGGCTATCCCCTCGGCGGCGGCGG < 41bp 1 0.168033298458028 1 0.0801767706871033 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806450 chr19:806451 synonymous SNV . 0 22 hm5C_associated_SNPs_13049 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 44bp
chr19 806466 806466 1 + G A rs200741107 806446 + 806426 806466 41 TCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCG TCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCA < 41bp 1 0.747370051823251 1 0.495555132627487 experiment 0.505259896353498 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806446 chr19:806466 synonymous SNV . 0 41 hm5C_associated_SNPs_13050 0 0 1 0 2 PTBP1 chr19:806408 3'AG 806408 Downstream 59bp
chr19 806466 806466 1 + G A rs200741107 806446 + 806426 806466 41 TCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCG TCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCA < 41bp 1 0.747370051823251 1 0.495555132627487 experiment 0.505259896353498 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806446 chr19:806466 synonymous SNV . 0 41 hm5C_associated_SNPs_13050 0 0 1 0 2 PTBP1 chr19:806556 5'GT 806556 Upstream 91bp
chr19 806466 806466 1 + G A rs200741107 806450 + 806430 806470 41 CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGG CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCAGCGG < 41bp 1 0.0583571909430843 1 0.0794002711772919 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806450 chr19:806466 synonymous SNV . 0 37 hm5C_associated_SNPs_13051 0 0 1 0 2 PTBP1 chr19:806408 3'AG 806408 Downstream 59bp
chr19 806466 806466 1 + G A rs200741107 806450 + 806430 806470 41 CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGG CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCAGCGG < 41bp 1 0.0583571909430843 1 0.0794002711772919 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806450 chr19:806466 synonymous SNV . 0 37 hm5C_associated_SNPs_13051 0 0 1 0 2 PTBP1 chr19:806556 5'GT 806556 Upstream 91bp
chr19 806466 806466 1 + G A rs200741107 806451 + 806431 806471 41 GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGGC GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCAGCGGC < 41bp 1 0.172698334165695 1 0.0568119883537292 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806451 chr19:806466 synonymous SNV . 0 36 hm5C_associated_SNPs_13052 0 0 1 0 2 PTBP1 chr19:806408 3'AG 806408 Downstream 59bp
chr19 806466 806466 1 + G A rs200741107 806451 + 806431 806471 41 GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGGC GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCAGCGGC < 41bp 1 0.172698334165695 1 0.0568119883537292 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806451 chr19:806466 synonymous SNV . 0 36 hm5C_associated_SNPs_13052 0 0 1 0 2 PTBP1 chr19:806556 5'GT 806556 Upstream 91bp
chr19 808577 808577 1 + C T rs148751202 808586 + 808566 808606 41 CACAAGCTGCACGGGAAGCCCATCCGCATCACGCTCTCGAA CACAAGCTGCATGGGAAGCCCATCCGCATCACGCTCTCGAA < 41bp 1 0.216874609772555 1 0.157594710588455 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:808586 chr19:808577 synonymous SNV . 0 12 hm5C_associated_SNPs_13053 0 0 1 0 1 PTBP1 chr19:808546 3'AG 808546 Downstream 32bp
chr19 971933 971933 1 + A C rs1051504 971936 + 971916 971956 41 TCTGCTCCCAACAAAGGAGGCGGCGGCGGCGGCGGCAGCAG TCTGCTCCCAACAAAGGCGGCGGCGGCGGCGGCGGCAGCAG < 41bp 1 0.724783679097445 1 0.845212638378143 experiment 0.55043264180511 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARID3A ENSG00000116017 CDS Human protein_coding chr19:971936 chr19:971933 synonymous SNV . 0 18 hm5C_associated_SNPs_13059 0 0 0 0 1 ARID3A chr19:971878 3'AG 971878 Downstream 56bp
chr19 971943 971943 1 + G A rs200079740 971936 + 971916 971956 41 TCTGCTCCCAACAAAGGAGGCGGCGGCGGCGGCGGCAGCAG TCTGCTCCCAACAAAGGAGGCGGCGGCAGCGGCGGCAGCAG < 41bp 1 0.780560286642326 1 0.881206393241882 experiment 0.438879426715348 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARID3A ENSG00000116017 CDS Human protein_coding chr19:971936 chr19:971943 nonsynonymous SNV 0.002 0 28 hm5C_associated_SNPs_13060 0 0 0 0 1 ARID3A chr19:971878 3'AG 971878 Downstream 66bp
chr19 971949 971949 1 + G A rs1051505 971936 + 971916 971956 41 TCTGCTCCCAACAAAGGAGGCGGCGGCGGCGGCGGCAGCAG TCTGCTCCCAACAAAGGAGGCGGCGGCGGCGGCAGCAGCAG < 41bp 1 0.774483822290365 1 0.792474865913391 experiment 0.45103235541927 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARID3A ENSG00000116017 CDS Human protein_coding chr19:971936 chr19:971949 nonsynonymous SNV 0.000 0 34 hm5C_associated_SNPs_13061 0 0 0 0 1 ARID3A chr19:971878 3'AG 971878 Downstream 72bp
chr19 1041922 1041922 1 + C A rs146597357 1041909 + 1041889 1041929 41 ATCTGTAATGTGAACAACACCTGCTTTCCGCAGCTGACACC ATCTGTAATGTGAACAACACCTGCTTTCCGCAGATGACACC < 41bp 1 0.356223996540462 1 0.0748174488544464 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041909 chr19:1041922 nonsynonymous SNV 0.001 1 34 hm5C_associated_SNPs_13068 0 0 0 0 2 ABCA7 chr19:1041830 3'AG 1041830 Downstream 93bp
chr19 1041922 1041922 1 + C A rs146597357 1041909 + 1041889 1041929 41 ATCTGTAATGTGAACAACACCTGCTTTCCGCAGCTGACACC ATCTGTAATGTGAACAACACCTGCTTTCCGCAGATGACACC < 41bp 1 0.356223996540462 1 0.0748174488544464 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041909 chr19:1041922 nonsynonymous SNV 0.001 1 34 hm5C_associated_SNPs_13068 0 0 0 0 2 ABCA7 chr19:1041971 5'GT 1041971 Upstream 50bp
chr19 1041922 1041922 1 + C A rs146597357 1041928 + 1041908 1041948 41 CCTGCTTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGC CCTGCTTTCCGCAGATGACACCGGGCGAGGAGCCCGGGCGC < 41bp 1 0.623152367650564 1 0.820521235466003 experiment 0.753695264698873 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041928 chr19:1041922 nonsynonymous SNV 0.001 1 15 hm5C_associated_SNPs_13069 0 0 0 0 2 ABCA7 chr19:1041830 3'AG 1041830 Downstream 93bp
chr19 1041922 1041922 1 + C A rs146597357 1041928 + 1041908 1041948 41 CCTGCTTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGC CCTGCTTTCCGCAGATGACACCGGGCGAGGAGCCCGGGCGC < 41bp 1 0.623152367650564 1 0.820521235466003 experiment 0.753695264698873 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041928 chr19:1041922 nonsynonymous SNV 0.001 1 15 hm5C_associated_SNPs_13069 0 0 0 0 2 ABCA7 chr19:1041971 5'GT 1041971 Upstream 50bp
chr19 1041922 1041922 1 + C A rs146597357 1041929 + 1041909 1041949 41 CTGCTTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGCC CTGCTTTCCGCAGATGACACCGGGCGAGGAGCCCGGGCGCC < 41bp 1 0.41048374329147 1 0.91149914264679 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041929 chr19:1041922 nonsynonymous SNV 0.001 1 14 hm5C_associated_SNPs_13070 0 0 0 0 2 ABCA7 chr19:1041830 3'AG 1041830 Downstream 93bp
chr19 1041922 1041922 1 + C A rs146597357 1041929 + 1041909 1041949 41 CTGCTTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGCC CTGCTTTCCGCAGATGACACCGGGCGAGGAGCCCGGGCGCC < 41bp 1 0.41048374329147 1 0.91149914264679 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041929 chr19:1041922 nonsynonymous SNV 0.001 1 14 hm5C_associated_SNPs_13070 0 0 0 0 2 ABCA7 chr19:1041971 5'GT 1041971 Upstream 50bp
chr19 1041922 1041922 1 + C A rs146597357 1041933 + 1041913 1041953 41 TTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGCCTGAG TTTCCGCAGATGACACCGGGCGAGGAGCCCGGGCGCCTGAG < 41bp 1 0.471133762436971 1 0.758113920688629 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041933 chr19:1041922 nonsynonymous SNV 0.001 1 10 hm5C_associated_SNPs_13071 0 0 0 0 2 ABCA7 chr19:1041830 3'AG 1041830 Downstream 93bp
chr19 1041922 1041922 1 + C A rs146597357 1041933 + 1041913 1041953 41 TTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGCCTGAG TTTCCGCAGATGACACCGGGCGAGGAGCCCGGGCGCCTGAG < 41bp 1 0.471133762436971 1 0.758113920688629 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041933 chr19:1041922 nonsynonymous SNV 0.001 1 10 hm5C_associated_SNPs_13071 0 0 0 0 2 ABCA7 chr19:1041971 5'GT 1041971 Upstream 50bp
chr19 1041922 1041922 1 + C A rs146597357 1041940 + 1041920 1041960 41 AGCTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTC AGATGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTC < 41bp 1 0.334108633381677 1 0.429884046316147 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041940 chr19:1041922 nonsynonymous SNV 0.001 1 3 hm5C_associated_SNPs_13072 0 0 0 0 2 ABCA7 chr19:1041830 3'AG 1041830 Downstream 93bp
chr19 1041922 1041922 1 + C A rs146597357 1041940 + 1041920 1041960 41 AGCTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTC AGATGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTC < 41bp 1 0.334108633381677 1 0.429884046316147 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041940 chr19:1041922 nonsynonymous SNV 0.001 1 3 hm5C_associated_SNPs_13072 0 0 0 0 2 ABCA7 chr19:1041971 5'GT 1041971 Upstream 50bp
chr19 1041922 1041922 1 + C A rs146597357 1041941 + 1041921 1041961 41 GCTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCA GATGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCA < 41bp 1 0.33473103386817 1 0.881372809410095 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041941 chr19:1041922 nonsynonymous SNV 0.001 1 2 hm5C_associated_SNPs_13073 0 0 0 0 2 ABCA7 chr19:1041830 3'AG 1041830 Downstream 93bp
chr19 1041922 1041922 1 + C A rs146597357 1041941 + 1041921 1041961 41 GCTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCA GATGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCA < 41bp 1 0.33473103386817 1 0.881372809410095 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041941 chr19:1041922 nonsynonymous SNV 0.001 1 2 hm5C_associated_SNPs_13073 0 0 0 0 2 ABCA7 chr19:1041971 5'GT 1041971 Upstream 50bp
chr19 1041922 1041922 1 + C A rs146597357 1041942 + 1041922 1041962 41 CTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCAA ATGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCAA < 41bp 1 0.445717387775845 1 0.8167644739151 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041942 chr19:1041922 nonsynonymous SNV 0.001 1 1 hm5C_associated_SNPs_13074 0 0 0 0 2 ABCA7 chr19:1041830 3'AG 1041830 Downstream 93bp
chr19 1041922 1041922 1 + C A rs146597357 1041942 + 1041922 1041962 41 CTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCAA ATGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCAA < 41bp 1 0.445717387775845 1 0.8167644739151 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041942 chr19:1041922 nonsynonymous SNV 0.001 1 1 hm5C_associated_SNPs_13074 0 0 0 0 2 ABCA7 chr19:1041971 5'GT 1041971 Upstream 50bp
chr19 1055299 1055299 1 + G A rs144595576 1055304 + 1055284 1055324 41 AGAACCTGACAGGCCGGAACCTGTCTGACTTCCTGGTCAAG AGAACCTGACAGGCCAGAACCTGTCTGACTTCCTGGTCAAG < 41bp 1 0.110362772248838 1 0.0831625163555145 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1055304 chr19:1055299 nonsynonymous SNV 0.280 4 16 hm5C_associated_SNPs_13075 0 0 1 0 1 ABCA7 chr19:1055350 5'GT 1055350 Upstream 52bp
chr19 1105668 1105668 1 + T A rs200291407 1105660 + 1105640 1105680 41 CACCTTGGCCGCCACAGGAGCCAGGGAGTAACGAAGAGATC CACCTTGGCCGCCACAGGAGCCAGGGAGAAACGAAGAGATC < 41bp 1 0.332581881262631 1 0.523594856262207 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout GPX4 ENSG00000167468 CDS Human protein_coding chr19:1105660 chr19:1105668 nonsynonymous SNV 0.132 1 29 hm5C_associated_SNPs_13076 0 0 1 0 1 GPX4 chr19:1105657 3'AG 1105657 Downstream 12bp
chr19 1105668 1105668 1 + T A rs200291407 1105661 + 1105641 1105681 41 ACCTTGGCCGCCACAGGAGCCAGGGAGTAACGAAGAGATCA ACCTTGGCCGCCACAGGAGCCAGGGAGAAACGAAGAGATCA < 41bp 1 0.7406978595985 1 0.855581998825073 experiment 0.518604280803 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout GPX4 ENSG00000167468 CDS Human protein_coding chr19:1105661 chr19:1105668 nonsynonymous SNV 0.132 1 28 hm5C_associated_SNPs_13077 0 0 1 0 1 GPX4 chr19:1105657 3'AG 1105657 Downstream 12bp
chr19 1244764 1244764 1 + C T rs559902384 1244784 + 1244764 1244804 41 CGGAGCCACCTCTGGATGAACTGCCCCCAGCCCCCGCCCCA TGGAGCCACCTCTGGATGAACTGCCCCCAGCCCCCGCCCCA < 41bp 1 0.641865276229728 1 0.0735363960266113 experiment 0.716269447540544 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP5D ENSG00000099624 UTR3 Human protein_coding chr19:1244784 chr19:1244764 . . 0 1 hm5C_associated_SNPs_13081 0 0 1 0 1 ATP5D chr19:1244736 3'AG 1244736 Downstream 29bp
chr19 1271648 1271648 1 + C A rs115311065 1271650 + 1271630 1271670 41 AGGTGAGGGGGAGGCCGGCCCAAGCACAGGGGTGGTTGCGG AGGTGAGGGGGAGGCCGGACCAAGCACAGGGGTGGTTGCGG < 41bp 1 0.442602325300915 1 0.551763117313385 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CIRBP ENSG00000099622 UTR3 Human protein_coding chr19:1271650 chr19:1271648 . . 0 19 hm5C_associated_SNPs_13085 0 0 0 0 1 CIRBP chr19:1271550 3'AG 1271550 Downstream 99bp
chr19 1276084 1276084 1 + G A rs369822915 1276100 + 1276080 1276120 41 GGGTGACGCTGCCCGTTTCCCAGGTGGGGCCACTGAAGCCG GGGTAACGCTGCCCGTTTCCCAGGTGGGGCCACTGAAGCCG < 41bp 1 0.794513853751485 1 0.864390552043915 experiment 0.41097229249703 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control C19orf24 ENSG00000228300 UTR5 Human protein_coding chr19:1276100 chr19:1276084 . . 0 5 hm5C_associated_SNPs_13088 0 0 0 0 1 C19orf24 chr19:1276102 5'GT 1276102 Upstream 19bp
chr19 1276093 1276093 1 + C T rs545631360 1276100 + 1276080 1276120 41 GGGTGACGCTGCCCGTTTCCCAGGTGGGGCCACTGAAGCCG GGGTGACGCTGCCTGTTTCCCAGGTGGGGCCACTGAAGCCG < 41bp 1 0.784893548172191 1 0.878220796585083 experiment 0.430212903655618 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control C19orf24 ENSG00000228300 UTR5 Human protein_coding chr19:1276100 chr19:1276093 . . 0 14 hm5C_associated_SNPs_13089 0 0 0 0 1 C19orf24 chr19:1276102 5'GT 1276102 Upstream 10bp
chr19 1383547 1383547 1 + C A rs111321874 1383566 + 1383546 1383586 41 GCCGGAGCGCAGTGTCGTCTCTGTGGCGCAATCGGTTAGCG GACGGAGCGCAGTGTCGTCTCTGTGGCGCAATCGGTTAGCG < 41bp 1 0.569772257075157 1 0.34613311290741 experiment 0.860455485849686 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS7 ENSG00000115286 UTR5 Human protein_coding chr19:1383566 chr19:1383547 . . 0 2 hm5C_associated_SNPs_13092 0 0 1 0 1 NDUFS7 chr19:1383607 5'GT 1383607 Upstream 61bp
chr19 1383550 1383550 1 + G A rs117758624 1383566 + 1383546 1383586 41 GCCGGAGCGCAGTGTCGTCTCTGTGGCGCAATCGGTTAGCG GCCGAAGCGCAGTGTCGTCTCTGTGGCGCAATCGGTTAGCG < 41bp 1 0.615747096497727 1 0.335829138755798 experiment 0.768505807004547 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS7 ENSG00000115286 UTR5 Human protein_coding chr19:1383566 chr19:1383550 . . 0 5 hm5C_associated_SNPs_13093 0 0 1 0 1 NDUFS7 chr19:1383607 5'GT 1383607 Upstream 58bp
chr19 1383555 1383555 1 + C A rs183203340 1383566 + 1383546 1383586 41 GCCGGAGCGCAGTGTCGTCTCTGTGGCGCAATCGGTTAGCG GCCGGAGCGAAGTGTCGTCTCTGTGGCGCAATCGGTTAGCG < 41bp 1 0.591996311703871 1 0.417900025844574 experiment 0.816007376592257 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS7 ENSG00000115286 UTR5 Human protein_coding chr19:1383566 chr19:1383555 . . 0 10 hm5C_associated_SNPs_13094 0 0 1 0 1 NDUFS7 chr19:1383607 5'GT 1383607 Upstream 53bp
chr19 1383559 1383559 1 + G A rs112353221 1383566 + 1383546 1383586 41 GCCGGAGCGCAGTGTCGTCTCTGTGGCGCAATCGGTTAGCG GCCGGAGCGCAGTATCGTCTCTGTGGCGCAATCGGTTAGCG < 41bp 1 0.555235490941767 1 0.321859776973724 experiment 0.889529018116466 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS7 ENSG00000115286 UTR5 Human protein_coding chr19:1383566 chr19:1383559 . . 0 14 hm5C_associated_SNPs_13095 0 0 1 0 1 NDUFS7 chr19:1383607 5'GT 1383607 Upstream 49bp
chr19 1383561 1383561 1 + C A rs115444924 1383566 + 1383546 1383586 41 GCCGGAGCGCAGTGTCGTCTCTGTGGCGCAATCGGTTAGCG GCCGGAGCGCAGTGTAGTCTCTGTGGCGCAATCGGTTAGCG < 41bp 1 0.642507225986442 1 0.29828816652298 experiment 0.714985548027115 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS7 ENSG00000115286 UTR5 Human protein_coding chr19:1383566 chr19:1383561 . . 0 16 hm5C_associated_SNPs_13096 0 0 1 0 1 NDUFS7 chr19:1383607 5'GT 1383607 Upstream 47bp
chr19 1383570 1383570 1 + G A rs576494027 1383566 + 1383546 1383586 41 GCCGGAGCGCAGTGTCGTCTCTGTGGCGCAATCGGTTAGCG GCCGGAGCGCAGTGTCGTCTCTGTAGCGCAATCGGTTAGCG < 41bp 1 0.723564988419561 1 0.404458999633789 experiment 0.552870023160878 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS7 ENSG00000115286 UTR5 Human protein_coding chr19:1383566 chr19:1383570 . . 0 25 hm5C_associated_SNPs_13097 0 0 1 0 1 NDUFS7 chr19:1383607 5'GT 1383607 Upstream 38bp
chr19 1383578 1383578 1 + C A rs559354209 1383566 + 1383546 1383586 41 GCCGGAGCGCAGTGTCGTCTCTGTGGCGCAATCGGTTAGCG GCCGGAGCGCAGTGTCGTCTCTGTGGCGCAATAGGTTAGCG < 41bp 1 0.601365488300578 1 0.573444306850433 experiment 0.797269023398845 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS7 ENSG00000115286 UTR5 Human protein_coding chr19:1383566 chr19:1383578 . . 0 33 hm5C_associated_SNPs_13098 0 0 1 0 1 NDUFS7 chr19:1383607 5'GT 1383607 Upstream 30bp
chr19 1383578 1383578 1 + C A rs559354209 1383594 + 1383574 1383614 41 CAATCGGTTAGCGCGTTCGGCTGTTAACCGAAAGGTTGGTG CAATAGGTTAGCGCGTTCGGCTGTTAACCGAAAGGTTGGTG < 41bp 1 0.15184927845914 1 0.109192043542862 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS7 ENSG00000115286 UTR5 Human protein_coding chr19:1383594 chr19:1383578 . . 0 5 hm5C_associated_SNPs_13099 0 0 1 0 1 NDUFS7 chr19:1383607 5'GT 1383607 Upstream 30bp
chr19 1383582 1383582 1 + T G rs138144610 1383566 + 1383546 1383586 41 GCCGGAGCGCAGTGTCGTCTCTGTGGCGCAATCGGTTAGCG GCCGGAGCGCAGTGTCGTCTCTGTGGCGCAATCGGTGAGCG < 41bp 1 0.675031521874082 1 0.40507185459137 experiment 0.649936956251837 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS7 ENSG00000115286 UTR5 Human protein_coding chr19:1383566 chr19:1383582 . . 0 37 hm5C_associated_SNPs_13100 0 0 1 0 1 NDUFS7 chr19:1383607 5'GT 1383607 Upstream 26bp
chr19 1383582 1383582 1 + T G rs138144610 1383594 + 1383574 1383614 41 CAATCGGTTAGCGCGTTCGGCTGTTAACCGAAAGGTTGGTG CAATCGGTGAGCGCGTTCGGCTGTTAACCGAAAGGTTGGTG < 41bp 1 0.163623445843092 1 0.100306391716003 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS7 ENSG00000115286 UTR5 Human protein_coding chr19:1383594 chr19:1383582 . . 0 9 hm5C_associated_SNPs_13101 0 0 1 0 1 NDUFS7 chr19:1383607 5'GT 1383607 Upstream 26bp
chr19 1383591 1383591 1 + C G rs561309612 1383594 + 1383574 1383614 41 CAATCGGTTAGCGCGTTCGGCTGTTAACCGAAAGGTTGGTG CAATCGGTTAGCGCGTTGGGCTGTTAACCGAAAGGTTGGTG < 41bp 1 0.138365620650031 1 0.086452454328537 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS7 ENSG00000115286 UTR5 Human protein_coding chr19:1383594 chr19:1383591 . . 0 18 hm5C_associated_SNPs_13102 0 0 1 0 1 NDUFS7 chr19:1383607 5'GT 1383607 Upstream 17bp
chr19 1438865 1438865 1 + C T rs7251165 1438868 + 1438848 1438888 41 ACCTACCGCGGCGTGGACCTCGACCAGCTGCTGGACATGTC ACCTACCGCGGCGTGGATCTCGACCAGCTGCTGGACATGTC < 41bp 1 0.676560102879026 1 0.245660245418549 experiment 0.646879794241948 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS15 ENSG00000115268 CDS Human protein_coding chr19:1438868 chr19:1438865 synonymous SNV . 0 18 hm5C_associated_SNPs_13109 0 0 1 0 2 RPS15 chr19:1438806 3'AG 1438806 Downstream 60bp
chr19 1438865 1438865 1 + C T rs7251165 1438868 + 1438848 1438888 41 ACCTACCGCGGCGTGGACCTCGACCAGCTGCTGGACATGTC ACCTACCGCGGCGTGGATCTCGACCAGCTGCTGGACATGTC < 41bp 1 0.676560102879026 1 0.245660245418549 experiment 0.646879794241948 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS15 ENSG00000115268 CDS Human protein_coding chr19:1438868 chr19:1438865 synonymous SNV . 0 18 hm5C_associated_SNPs_13109 0 0 1 0 2 RPS15 chr19:1438891 5'GT 1438891 Upstream 27bp
chr19 1440374 1440374 1 + C T rs139332437 1440359 + 1440339 1440379 41 CTCCCGCAGCCCGAGATGATCGGCCACTACCTGGGCGAGTT CTCCCGCAGCCCGAGATGATCGGCCACTACCTGGGTGAGTT < 41bp 1 0.595227073098064 1 0.707190155982971 experiment 0.809545853803871 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPS15 ENSG00000115268 CDS Human protein_coding chr19:1440359 chr19:1440374 synonymous SNV . 0 36 hm5C_associated_SNPs_13110 0 0 1 0 1 RPS15 chr19:1440348 3'AG 1440348 Downstream 27bp
chr19 1453531 1453531 1 + G A rs150959468 1453533 + 1453513 1453553 41 GAGGGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAG GAGGGCAGCCCAGTACACAGCTCCGGGCCCTCCAAGGACAG < 41bp 1 0.370599770492496 1 0.538624167442322 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453533 chr19:1453531 nonsynonymous SNV 0.014 1 19 hm5C_associated_SNPs_13111 0 0 0 0 1 APC2 chr19:1453610 5'GT 1453610 Upstream 80bp
chr19 1453531 1453531 1 + G A rs150959468 1453535 + 1453515 1453555 41 GGGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCT GGGCAGCCCAGTACACAGCTCCGGGCCCTCCAAGGACAGCT < 41bp 1 0.201170555401579 1 0.486921727657318 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453535 chr19:1453531 nonsynonymous SNV 0.014 1 17 hm5C_associated_SNPs_13112 0 0 0 0 1 APC2 chr19:1453610 5'GT 1453610 Upstream 80bp
chr19 1453531 1453531 1 + G A rs150959468 1453536 + 1453516 1453556 41 GGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCTT GGCAGCCCAGTACACAGCTCCGGGCCCTCCAAGGACAGCTT < 41bp 1 0.188483374200707 1 0.579424619674683 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453536 chr19:1453531 nonsynonymous SNV 0.014 1 16 hm5C_associated_SNPs_13113 0 0 0 0 1 APC2 chr19:1453610 5'GT 1453610 Upstream 80bp
chr19 1453531 1453531 1 + G A rs150959468 1453540 + 1453520 1453560 41 GCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCTTTGGG GCCCAGTACACAGCTCCGGGCCCTCCAAGGACAGCTTTGGG < 41bp 1 0.0107277090891951 1 0.110493063926697 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453540 chr19:1453531 nonsynonymous SNV 0.014 1 12 hm5C_associated_SNPs_13114 0 0 0 0 1 APC2 chr19:1453610 5'GT 1453610 Upstream 80bp
chr19 1453531 1453531 1 + G A rs150959468 1453541 + 1453521 1453561 41 CCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCTTTGGGG CCCAGTACACAGCTCCGGGCCCTCCAAGGACAGCTTTGGGG < 41bp 1 0.0127983014652098 1 0.111840277910233 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453541 chr19:1453531 nonsynonymous SNV 0.014 1 11 hm5C_associated_SNPs_13115 0 0 0 0 1 APC2 chr19:1453610 5'GT 1453610 Upstream 80bp
chr19 2271386 2271386 1 + C T rs28384673 2271393 + 2271373 2271413 41 ATCATCTTCAGTTCCAGGGTCTCCCTCCACTGCTGTAGTAA ATCATCTTCAGTTTCAGGGTCTCCCTCCACTGCTGTAGTAA < 41bp 1 0.234418483098529 1 0.258628219366074 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control OAZ1 ENSG00000104904 CDS Human protein_coding chr19:2271393 chr19:2271386 nonsynonymous SNV 0.597 1 14 hm5C_associated_SNPs_13123 0 0 1 1 1 OAZ1 chr19:2271384 3'AG 2271384 Downstream 3bp
chr19 2271906 2271906 1 + C A rs532142058 2271919 + 2271899 2271939 41 GCAGCCTCTACATCGAGATCCCGGGCGGCGCGCTGCCCGAG GCAGCCTATACATCGAGATCCCGGGCGGCGCGCTGCCCGAG < 41bp 1 0.725344779873058 1 0.817157626152039 experiment 0.549310440253884 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control OAZ1 ENSG00000104904 CDS Human protein_coding chr19:2271919 chr19:2271906 synonymous SNV . 0 8 hm5C_associated_SNPs_13124 0 0 1 0 1 OAZ1 chr19:2271953 5'GT 2271953 Upstream 48bp
chr19 2271924 2271924 1 + C A rs200774437 2271919 + 2271899 2271939 41 GCAGCCTCTACATCGAGATCCCGGGCGGCGCGCTGCCCGAG GCAGCCTCTACATCGAGATCCCGGGAGGCGCGCTGCCCGAG < 41bp 1 0.730648963472919 1 0.858916997909546 experiment 0.538702073054162 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control OAZ1 ENSG00000104904 CDS Human protein_coding chr19:2271919 chr19:2271924 synonymous SNV . 0 26 hm5C_associated_SNPs_13125 0 0 1 0 1 OAZ1 chr19:2271953 5'GT 2271953 Upstream 30bp
chr19 2271937 2271937 1 + G A rs533784107 2271919 + 2271899 2271939 41 GCAGCCTCTACATCGAGATCCCGGGCGGCGCGCTGCCCGAG GCAGCCTCTACATCGAGATCCCGGGCGGCGCGCTGCCCAAG < 41bp 1 0.678680097539645 1 0.861434459686279 experiment 0.642639804920709 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control OAZ1 ENSG00000104904 CDS Human protein_coding chr19:2271919 chr19:2271937 nonsynonymous SNV 0.726 1 39 hm5C_associated_SNPs_13126 0 0 1 2 1 OAZ1 chr19:2271953 5'GT 2271953 Upstream 17bp
chr19 2328712 2328712 1 + G T rs538146670 2328700 + 2328680 2328720 41 GCCGTTGGTTGCGGCGGGCACCGGCCGACATGGCGGCAGCG GCCGTTGGTTGCGGCGGGCACCGGCCGACATGTCGGCAGCG < 41bp 1 0.52675122319858 1 0.658042669296265 experiment 0.94649755360284 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SPPL2B ENSG00000005206 ncRNA_exonic Human protein_coding chr19:2328700 chr19:2328712 . 0.504 1 33 hm5C_associated_SNPs_13127 0 0 1 0 1 SPPL2B chr19:2328774 5'GT 2328774 Upstream 63bp
chr19 2328719 2328719 1 + C A rs556086917 2328700 + 2328680 2328720 41 GCCGTTGGTTGCGGCGGGCACCGGCCGACATGGCGGCAGCG GCCGTTGGTTGCGGCGGGCACCGGCCGACATGGCGGCAGAG < 41bp 1 0.522624437220898 1 0.608023822307587 experiment 0.954751125558204 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SPPL2B ENSG00000005206 ncRNA_exonic Human protein_coding chr19:2328700 chr19:2328719 . 0.013 0 40 hm5C_associated_SNPs_13128 0 0 1 0 1 SPPL2B chr19:2328774 5'GT 2328774 Upstream 56bp
chr19 2343243 2343243 1 + G A rs145227878 2343242 + 2343222 2343262 41 CTCCAGGATGCCCTGGGCATCGCCTTCTGCCTCTACATGCT CTCCAGGATGCCCTGGGCATCACCTTCTGCCTCTACATGCT < 41bp 1 0.31426226415951 1 0.0544218719005585 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPPL2B ENSG00000005206 ncRNA_exonic Human protein_coding chr19:2343242 chr19:2343243 . 0.982 1 22 hm5C_associated_SNPs_13132 0 0 1 0 2 SPPL2B chr19:2343209 3'AG 2343209 Downstream 35bp
chr19 2343243 2343243 1 + G A rs145227878 2343242 + 2343222 2343262 41 CTCCAGGATGCCCTGGGCATCGCCTTCTGCCTCTACATGCT CTCCAGGATGCCCTGGGCATCACCTTCTGCCTCTACATGCT < 41bp 1 0.31426226415951 1 0.0544218719005585 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPPL2B ENSG00000005206 ncRNA_exonic Human protein_coding chr19:2343242 chr19:2343243 . 0.982 1 22 hm5C_associated_SNPs_13132 0 0 1 0 2 SPPL2B chr19:2343290 5'GT 2343290 Upstream 48bp
chr19 2425366 2425366 1 + C G rs201826994 2425386 + 2425366 2425406 41 CGGCAGCTGCAGAAGGCGGCCGTGCGCCTCCTCAGCGAGCA GGGCAGCTGCAGAAGGCGGCCGTGCGCCTCCTCAGCGAGCA < 41bp 1 0.368501802225321 1 0.462082415819168 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TMPRSS9 ENSG00000178297 CDS Human protein_coding chr19:2425386 chr19:2425366 nonsynonymous SNV 0.971 3 1 hm5C_associated_SNPs_13133 0 0 0 0 1 TMPRSS9 chr19:2425355 3'AG 2425355 Downstream 12bp
chr19 2425371 2425371 1 + G A rs374108172 2425386 + 2425366 2425406 41 CGGCAGCTGCAGAAGGCGGCCGTGCGCCTCCTCAGCGAGCA CGGCAACTGCAGAAGGCGGCCGTGCGCCTCCTCAGCGAGCA < 41bp 1 0.338685157174634 1 0.486009776592255 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TMPRSS9 ENSG00000178297 CDS Human protein_coding chr19:2425386 chr19:2425371 synonymous SNV . 0 6 hm5C_associated_SNPs_13134 0 0 0 0 1 TMPRSS9 chr19:2425355 3'AG 2425355 Downstream 17bp
chr19 2476314 2476314 1 + G A rs531896163 2476310 + 2476290 2476330 41 TCGGATTTTGCAATTTCTCCCTGGGGACTGCCGTGGAGCCG TCGGATTTTGCAATTTCTCCCTGGAGACTGCCGTGGAGCCG < 41bp 1 0.691984859886735 1 0.802474498748779 experiment 0.616030280226529 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GADD45B ENSG00000099860 UTR5 Human protein_coding chr19:2476310 chr19:2476314 . . 0 25 hm5C_associated_SNPs_13135 0 0 1 0 1 GADD45B chr19:2476400 5'GT 2476400 Upstream 87bp
chr19 2794802 2794802 1 + C A rs36054718 2794811 + 2794791 2794831 41 CATGTTTCCCCCTCCAAGGACATCCGGACAGCCAGCACAGA CATGTTTCCCCATCCAAGGACATCCGGACAGCCAGCACAGA < 41bp 1 0.0499245239868718 1 0.278768509626389 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THOP1 ENSG00000172009 CDS Human protein_coding chr19:2794811 chr19:2794802 synonymous SNV . 0 12 hm5C_associated_SNPs_13136 0 0 1 0 1 THOP1 chr19:2794762 3'AG 2794762 Downstream 41bp
chr19 3119239 3119239 1 + C T rs4900 3119221 + 3119201 3119241 41 CAGAACCGGATGGAGGAGAGCAAAGCCCTGTTCCGGACCAT CAGAACCGGATGGAGGAGAGCAAAGCCCTGTTCCGGACTAT < 41bp 1 0.276784069337189 1 0.404965162277222 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GNA11 ENSG00000088256 CDS Human protein_coding chr19:3119221 chr19:3119239 synonymous SNV . 0 39 hm5C_associated_SNPs_13139 1 0 1 0 1 GNA11 chr19:3119204 3'AG 3119204 Downstream 36bp
chr19 3151780 3151780 1 + G A rs2230330 3151786 + 3151766 3151806 41 CTCCGCAGCCGCATGCCCACCACTGGCATCAACGAGTACTG CTCCGCAGCCGCATACCCACCACTGGCATCAACGAGTACTG < 41bp 1 0.404371551782024 1 0.0413196086883545 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNA15 ENSG00000060558 CDS Human protein_coding chr19:3151786 chr19:3151780 nonsynonymous SNV 0.999 0 15 hm5C_associated_SNPs_13144 0 0 0 0 2 GNA15 chr19:3151705 3'AG 3151705 Downstream 76bp
chr19 3151780 3151780 1 + G A rs2230330 3151786 + 3151766 3151806 41 CTCCGCAGCCGCATGCCCACCACTGGCATCAACGAGTACTG CTCCGCAGCCGCATACCCACCACTGGCATCAACGAGTACTG < 41bp 1 0.404371551782024 1 0.0413196086883545 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNA15 ENSG00000060558 CDS Human protein_coding chr19:3151786 chr19:3151780 nonsynonymous SNV 0.999 0 15 hm5C_associated_SNPs_13144 0 0 0 0 2 GNA15 chr19:3151833 5'GT 3151833 Upstream 54bp
chr19 3207646 3207646 1 + A G rs2288949 3207638 + 3207618 3207658 41 TGTCCCCAGCACTTCAGCCTCCTCTACAAGACCGTCCAGAG TGTCCCCAGCACTTCAGCCTCCTCTACAGGACCGTCCAGAG < 41bp 1 0.0736350225729137 1 0.224492192268372 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCLN ENSG00000125912 CDS Human protein_coding chr19:3207638 chr19:3207646 nonsynonymous SNV 0.647 0 29 hm5C_associated_SNPs_13145 0 0 1 0 2 NCLN chr19:3207627 3'AG 3207627 Downstream 20bp
chr19 3207646 3207646 1 + A G rs2288949 3207638 + 3207618 3207658 41 TGTCCCCAGCACTTCAGCCTCCTCTACAAGACCGTCCAGAG TGTCCCCAGCACTTCAGCCTCCTCTACAGGACCGTCCAGAG < 41bp 1 0.0736350225729137 1 0.224492192268372 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCLN ENSG00000125912 CDS Human protein_coding chr19:3207638 chr19:3207646 nonsynonymous SNV 0.647 0 29 hm5C_associated_SNPs_13145 0 0 1 0 2 NCLN chr19:3207745 5'GT 3207745 Upstream 100bp
chr19 3462849 3462849 1 + C T rs8047 3462832 + 3462812 3462852 41 CCAGGGGGCAGCACAGCCGGCCCCCGGCCCACGTTTTCGGT CCAGGGGGCAGCACAGCCGGCCCCCGGCCCACGTTTTTGGT < 41bp 1 0.0602142435467889 1 0.194137901067734 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFIC ENSG00000141905 UTR3 Human protein_coding chr19:3462832 chr19:3462849 . . 0 38 hm5C_associated_SNPs_13146 0 0 1 0 1 NFIC chr19:3462750 3'AG 3462750 Downstream 100bp
chr19 3462849 3462849 1 + C T rs8047 3462833 + 3462813 3462853 41 CAGGGGGCAGCACAGCCGGCCCCCGGCCCACGTTTTCGGTG CAGGGGGCAGCACAGCCGGCCCCCGGCCCACGTTTTTGGTG < 41bp 1 0.0971790061975719 1 0.17969611287117 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NFIC ENSG00000141905 UTR3 Human protein_coding chr19:3462833 chr19:3462849 . . 0 37 hm5C_associated_SNPs_13147 0 0 1 0 1 NFIC chr19:3462750 3'AG 3462750 Downstream 100bp
chr19 3462849 3462849 1 + C T rs8047 3462834 + 3462814 3462854 41 AGGGGGCAGCACAGCCGGCCCCCGGCCCACGTTTTCGGTGG AGGGGGCAGCACAGCCGGCCCCCGGCCCACGTTTTTGGTGG < 41bp 1 0.437761646906461 1 0.589706718921661 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NFIC ENSG00000141905 UTR3 Human protein_coding chr19:3462834 chr19:3462849 . . 0 36 hm5C_associated_SNPs_13148 0 0 1 0 1 NFIC chr19:3462750 3'AG 3462750 Downstream 100bp
chr19 3462849 3462849 1 + C T rs8047 3462835 + 3462815 3462855 41 GGGGGCAGCACAGCCGGCCCCCGGCCCACGTTTTCGGTGGA GGGGGCAGCACAGCCGGCCCCCGGCCCACGTTTTTGGTGGA < 41bp 1 0.145479752570451 1 0.688119232654572 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NFIC ENSG00000141905 UTR3 Human protein_coding chr19:3462835 chr19:3462849 . . 0 35 hm5C_associated_SNPs_13149 0 0 1 0 1 NFIC chr19:3462750 3'AG 3462750 Downstream 100bp
chr19 3462849 3462849 1 + C T rs8047 3462836 + 3462816 3462856 41 GGGGCAGCACAGCCGGCCCCCGGCCCACGTTTTCGGTGGAA GGGGCAGCACAGCCGGCCCCCGGCCCACGTTTTTGGTGGAA < 41bp 1 0.168845975941834 1 0.765260577201843 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NFIC ENSG00000141905 UTR3 Human protein_coding chr19:3462836 chr19:3462849 . . 0 34 hm5C_associated_SNPs_13150 0 0 1 0 1 NFIC chr19:3462750 3'AG 3462750 Downstream 100bp
chr19 3527698 3527698 1 + C T rs148549110 3527693 + 3527673 3527713 41 CCAAGATCCCCTTCAAGGTGCTGGACGCGCCCGAGCTGCAG CCAAGATCCCCTTCAAGGTGCTGGATGCGCCCGAGCTGCAG < 41bp 1 0.789368284775339 1 0.568421065807343 experiment 0.421263430449321 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3527693 chr19:3527698 synonymous SNV . 0 26 hm5C_associated_SNPs_13153 0 0 0 0 1 FZR1 chr19:3527629 3'AG 3527629 Downstream 70bp
chr19 3739107 3739107 1 + C T rs35628485 3739101 + 3739081 3739121 41 TGGGTCGTGACCTGCGGGAGCAAGAGCGGGGCATCATTCCC TGGGTCGTGACCTGCGGGAGCAAGAGTGGGGCATCATTCCC < 41bp 1 0.794206485385684 1 0.556042850017548 experiment 0.411587029228632 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TJP3 ENSG00000105289 CDS Human protein_coding chr19:3739101 chr19:3739107 nonsynonymous SNV 0.641 4 27 hm5C_associated_SNPs_13155 0 0 0 0 1 TJP3 chr19:3739132 5'GT 3739132 Upstream 26bp
chr19 4222726 4222726 1 + C T rs547203239 4222718 + 4222698 4222738 41 TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCGCCACC TTAAGGAAGCCTTGAAGGAGCAGCCGGCTGCCCTCGCCACC < 41bp 1 0.286853004900377 1 0.204042494297028 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4222718 chr19:4222726 synonymous SNV . 0 29 hm5C_associated_SNPs_13160 0 0 0 0 2 ANKRD24 chr19:4222667 3'AG 4222667 Downstream 60bp
chr19 4222726 4222726 1 + C T rs547203239 4222718 + 4222698 4222738 41 TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCGCCACC TTAAGGAAGCCTTGAAGGAGCAGCCGGCTGCCCTCGCCACC < 41bp 1 0.286853004900377 1 0.204042494297028 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4222718 chr19:4222726 synonymous SNV . 0 29 hm5C_associated_SNPs_13160 0 0 0 0 2 ANKRD24 chr19:4222792 5'GT 4222792 Upstream 67bp
chr19 4222727 4222727 1 + G A rs149730870 4222718 + 4222698 4222738 41 TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCGCCACC TTAAGGAAGCCTTGAAGGAGCAGCCGGCCACCCTCGCCACC < 41bp 1 0.310047155863269 1 0.425137668848038 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4222718 chr19:4222727 nonsynonymous SNV 0.000 0 30 hm5C_associated_SNPs_13161 0 0 0 0 2 ANKRD24 chr19:4222667 3'AG 4222667 Downstream 61bp
chr19 4222727 4222727 1 + G A rs149730870 4222718 + 4222698 4222738 41 TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCGCCACC TTAAGGAAGCCTTGAAGGAGCAGCCGGCCACCCTCGCCACC < 41bp 1 0.310047155863269 1 0.425137668848038 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4222718 chr19:4222727 nonsynonymous SNV 0.000 0 30 hm5C_associated_SNPs_13161 0 0 0 0 2 ANKRD24 chr19:4222792 5'GT 4222792 Upstream 66bp
chr19 4268633 4268633 1 + G A rs558674043 4268640 + 4268620 4268660 41 TGACGCCTGGCGCGTCCTCCCTGAGCCAACTGGGTGCATAC TGACGCCTGGCGCATCCTCCCTGAGCCAACTGGGTGCATAC < 41bp 1 0.708529173535555 1 0.120698362588882 experiment 0.582941652928891 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC94 ENSG00000105248 CDS Human protein_coding chr19:4268640 chr19:4268633 synonymous SNV . 0 14 hm5C_associated_SNPs_13162 0 0 1 0 1 CCDC94 chr19:4268581 3'AG 4268581 Downstream 53bp
chr19 4402720 4402720 1 + C G rs532080132 4402714 + 4402694 4402734 41 CAGCGGCCGCCTGAGGGGAGCCCGCGCCTCCGCCGCCTGAG CAGCGGCCGCCTGAGGGGAGCCCGCGGCTCCGCCGCCTGAG < 41bp 1 0.439329106858918 1 0.316487520933151 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHAF1A ENSG00000167670 UTR5 Human protein_coding chr19:4402714 chr19:4402720 . . 0 27 hm5C_associated_SNPs_13163 0 0 1 0 1 CHAF1A chr19:4402811 5'GT 4402811 Upstream 92bp
chr19 4402720 4402720 1 + C G rs532080132 4402715 + 4402695 4402735 41 AGCGGCCGCCTGAGGGGAGCCCGCGCCTCCGCCGCCTGAGA AGCGGCCGCCTGAGGGGAGCCCGCGGCTCCGCCGCCTGAGA < 41bp 1 0.594641548433105 1 0.818751335144043 experiment 0.81071690313379 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHAF1A ENSG00000167670 UTR5 Human protein_coding chr19:4402715 chr19:4402720 . . 0 26 hm5C_associated_SNPs_13164 0 0 1 0 1 CHAF1A chr19:4402811 5'GT 4402811 Upstream 92bp
chr19 4402720 4402720 1 + C G rs532080132 4402718 + 4402698 4402738 41 GGCCGCCTGAGGGGAGCCCGCGCCTCCGCCGCCTGAGAGGA GGCCGCCTGAGGGGAGCCCGCGGCTCCGCCGCCTGAGAGGA < 41bp 1 0.687524481727427 1 0.645641922950745 experiment 0.624951036545147 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHAF1A ENSG00000167670 UTR5 Human protein_coding chr19:4402718 chr19:4402720 . . 0 23 hm5C_associated_SNPs_13165 0 0 1 0 1 CHAF1A chr19:4402811 5'GT 4402811 Upstream 92bp
chr19 4402720 4402720 1 + C G rs532080132 4402721 + 4402701 4402741 41 CGCCTGAGGGGAGCCCGCGCCTCCGCCGCCTGAGAGGAGGT CGCCTGAGGGGAGCCCGCGGCTCCGCCGCCTGAGAGGAGGT < 41bp 1 0.56459221179024 1 0.707516372203827 experiment 0.87081557641952 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHAF1A ENSG00000167670 UTR5 Human protein_coding chr19:4402721 chr19:4402720 . . 0 20 hm5C_associated_SNPs_13166 0 0 1 0 1 CHAF1A chr19:4402811 5'GT 4402811 Upstream 92bp
chr19 4409756 4409756 1 + A G rs2230636 4409753 + 4409733 4409773 41 CCCACCTCCACGCCCCTCCGCAGAGTGAGTATCTCCCATGG CCCACCTCCACGCCCCTCCGCAGGGTGAGTATCTCCCATGG < 41bp 1 0.761153754810091 1 0.824457705020905 experiment 0.477692490379818 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4409753 chr19:4409756 synonymous SNV . 0 24 hm5C_associated_SNPs_13168 0 0 1 0 1 CHAF1A chr19:4409756 3'AG 4409756 Downstream 1bp
chr19 4442244 4442244 1 + T C rs150686707 4442256 + 4442236 4442276 41 GTCCAGATTGGTGCTGAAGACATGGACGGCTTCCAGGCAGA GTCCAGATCGGTGCTGAAGACATGGACGGCTTCCAGGCAGA < 41bp 1 0.595342778934802 1 0.368693470954895 experiment 0.809314442130396 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442256 chr19:4442244 synonymous SNV . 0 9 hm5C_associated_SNPs_13169 0 0 1 0 2 CHAF1A chr19:4442242 3'AG 4442242 Downstream 3bp
chr19 4442244 4442244 1 + T C rs150686707 4442256 + 4442236 4442276 41 GTCCAGATTGGTGCTGAAGACATGGACGGCTTCCAGGCAGA GTCCAGATCGGTGCTGAAGACATGGACGGCTTCCAGGCAGA < 41bp 1 0.595342778934802 1 0.368693470954895 experiment 0.809314442130396 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442256 chr19:4442244 synonymous SNV . 0 9 hm5C_associated_SNPs_13169 0 0 1 0 2 CHAF1A chr19:4442338 5'GT 4442338 Upstream 95bp
chr19 4442244 4442244 1 + T C rs150686707 4442262 + 4442242 4442282 41 ATTGGTGCTGAAGACATGGACGGCTTCCAGGCAGACACGGA ATCGGTGCTGAAGACATGGACGGCTTCCAGGCAGACACGGA < 41bp 1 0.384969990809604 1 0.14140722155571 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442262 chr19:4442244 synonymous SNV . 0 3 hm5C_associated_SNPs_13170 0 0 1 0 2 CHAF1A chr19:4442242 3'AG 4442242 Downstream 3bp
chr19 4442244 4442244 1 + T C rs150686707 4442262 + 4442242 4442282 41 ATTGGTGCTGAAGACATGGACGGCTTCCAGGCAGACACGGA ATCGGTGCTGAAGACATGGACGGCTTCCAGGCAGACACGGA < 41bp 1 0.384969990809604 1 0.14140722155571 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442262 chr19:4442244 synonymous SNV . 0 3 hm5C_associated_SNPs_13170 0 0 1 0 2 CHAF1A chr19:4442338 5'GT 4442338 Upstream 95bp
chr19 4442280 4442280 1 + G A rs140147311 4442262 + 4442242 4442282 41 ATTGGTGCTGAAGACATGGACGGCTTCCAGGCAGACACGGA ATTGGTGCTGAAGACATGGACGGCTTCCAGGCAGACACAGA < 41bp 1 0.396915180967981 1 0.10079562664032 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442262 chr19:4442280 synonymous SNV . 0 39 hm5C_associated_SNPs_13171 0 0 1 0 2 CHAF1A chr19:4442242 3'AG 4442242 Downstream 39bp
chr19 4442280 4442280 1 + G A rs140147311 4442262 + 4442242 4442282 41 ATTGGTGCTGAAGACATGGACGGCTTCCAGGCAGACACGGA ATTGGTGCTGAAGACATGGACGGCTTCCAGGCAGACACAGA < 41bp 1 0.396915180967981 1 0.10079562664032 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442262 chr19:4442280 synonymous SNV . 0 39 hm5C_associated_SNPs_13171 0 0 1 0 2 CHAF1A chr19:4442338 5'GT 4442338 Upstream 59bp
chr19 4442280 4442280 1 + G A rs140147311 4442265 + 4442245 4442285 41 GGTGCTGAAGACATGGACGGCTTCCAGGCAGACACGGAGGA GGTGCTGAAGACATGGACGGCTTCCAGGCAGACACAGAGGA < 41bp 1 0.0621291307090623 1 0.162123322486877 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442265 chr19:4442280 synonymous SNV . 0 36 hm5C_associated_SNPs_13172 0 0 1 0 2 CHAF1A chr19:4442242 3'AG 4442242 Downstream 39bp
chr19 4442280 4442280 1 + G A rs140147311 4442265 + 4442245 4442285 41 GGTGCTGAAGACATGGACGGCTTCCAGGCAGACACGGAGGA GGTGCTGAAGACATGGACGGCTTCCAGGCAGACACAGAGGA < 41bp 1 0.0621291307090623 1 0.162123322486877 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442265 chr19:4442280 synonymous SNV . 0 36 hm5C_associated_SNPs_13172 0 0 1 0 2 CHAF1A chr19:4442338 5'GT 4442338 Upstream 59bp
chr19 4442280 4442280 1 + G A rs140147311 4442277 + 4442257 4442297 41 ATGGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAGAGGA ATGGACGGCTTCCAGGCAGACACAGAGGAGGAGGAAGAGGA < 41bp 1 0.426780642019351 1 0.197217524051666 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442277 chr19:4442280 synonymous SNV . 0 24 hm5C_associated_SNPs_13173 0 0 1 0 2 CHAF1A chr19:4442242 3'AG 4442242 Downstream 39bp
chr19 4442280 4442280 1 + G A rs140147311 4442277 + 4442257 4442297 41 ATGGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAGAGGA ATGGACGGCTTCCAGGCAGACACAGAGGAGGAGGAAGAGGA < 41bp 1 0.426780642019351 1 0.197217524051666 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442277 chr19:4442280 synonymous SNV . 0 24 hm5C_associated_SNPs_13173 0 0 1 0 2 CHAF1A chr19:4442338 5'GT 4442338 Upstream 59bp
chr19 4442280 4442280 1 + G A rs140147311 4442279 + 4442259 4442299 41 GGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAGAGGAGG GGACGGCTTCCAGGCAGACACAGAGGAGGAGGAAGAGGAGG < 41bp 1 0.694374411562716 1 0.598636388778687 experiment 0.611251176874567 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442279 chr19:4442280 synonymous SNV . 0 22 hm5C_associated_SNPs_13174 0 0 1 0 2 CHAF1A chr19:4442242 3'AG 4442242 Downstream 39bp
chr19 4442280 4442280 1 + G A rs140147311 4442279 + 4442259 4442299 41 GGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAGAGGAGG GGACGGCTTCCAGGCAGACACAGAGGAGGAGGAAGAGGAGG < 41bp 1 0.694374411562716 1 0.598636388778687 experiment 0.611251176874567 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442279 chr19:4442280 synonymous SNV . 0 22 hm5C_associated_SNPs_13174 0 0 1 0 2 CHAF1A chr19:4442338 5'GT 4442338 Upstream 59bp
chr19 4475340 4475340 1 + A T rs193125218 4475343 + 4475323 4475363 41 ATCTTTTTCTTTGGCACACACGAAACGTAAGTGTCCCCTTC ATCTTTTTCTTTGGCACTCACGAAACGTAAGTGTCCCCTTC < 41bp 1 0.547325574264225 1 0.426686823368073 experiment 0.90534885147155 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4475343 chr19:4475340 synonymous SNV . 0 18 hm5C_associated_SNPs_13181 0 0 1 0 2 HDGFL2 chr19:4475272 3'AG 4475272 Downstream 69bp
chr19 4475340 4475340 1 + A T rs193125218 4475343 + 4475323 4475363 41 ATCTTTTTCTTTGGCACACACGAAACGTAAGTGTCCCCTTC ATCTTTTTCTTTGGCACTCACGAAACGTAAGTGTCCCCTTC < 41bp 1 0.547325574264225 1 0.426686823368073 experiment 0.90534885147155 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4475343 chr19:4475340 synonymous SNV . 0 18 hm5C_associated_SNPs_13181 0 0 1 0 2 HDGFL2 chr19:4475348 5'GT 4475348 Upstream 9bp
chr19 4475340 4475340 1 + A T rs193125218 4475348 + 4475328 4475368 41 TTTCTTTGGCACACACGAAACGTAAGTGTCCCCTTCTGGGG TTTCTTTGGCACTCACGAAACGTAAGTGTCCCCTTCTGGGG < 41bp 1 0.477004463500332 1 0.18256351351738 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4475348 chr19:4475340 synonymous SNV . 0 13 hm5C_associated_SNPs_13182 0 0 1 0 2 HDGFL2 chr19:4475272 3'AG 4475272 Downstream 69bp
chr19 4475340 4475340 1 + A T rs193125218 4475348 + 4475328 4475368 41 TTTCTTTGGCACACACGAAACGTAAGTGTCCCCTTCTGGGG TTTCTTTGGCACTCACGAAACGTAAGTGTCCCCTTCTGGGG < 41bp 1 0.477004463500332 1 0.18256351351738 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4475348 chr19:4475340 synonymous SNV . 0 13 hm5C_associated_SNPs_13182 0 0 1 0 2 HDGFL2 chr19:4475348 5'GT 4475348 Upstream 9bp
chr19 4639545 4639545 1 + C T rs9917070 4639536 + 4639516 4639556 41 CCGCCCCGCCCCGGCCCCGGCCCCGGCTCCGGCGCTGCTCC CCGCCCCGCCCCGGCCCCGGCCCCGGCTCTGGCGCTGCTCC < 41bp 1 0.511683789171103 1 0.412820905447006 experiment 0.976632421657793 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNFAIP8L1 ENSG00000185361 UTR5 Human protein_coding chr19:4639536 chr19:4639545 . . 0 30 hm5C_associated_SNPs_13185 0 0 0 0 1 TNFAIP8L1 chr19:4639641 5'GT 4639641 Upstream 97bp
chr19 4639545 4639545 1 + C T rs9917070 4639538 + 4639518 4639558 41 GCCCCGCCCCGGCCCCGGCCCCGGCTCCGGCGCTGCTCCCA GCCCCGCCCCGGCCCCGGCCCCGGCTCTGGCGCTGCTCCCA < 41bp 1 0.616346062003018 1 0.714073300361633 experiment 0.767307875993964 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TNFAIP8L1 ENSG00000185361 UTR5 Human protein_coding chr19:4639538 chr19:4639545 . . 0 28 hm5C_associated_SNPs_13186 0 0 0 0 1 TNFAIP8L1 chr19:4639641 5'GT 4639641 Upstream 97bp
chr19 4954448 4954448 1 + G A rs17878253 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGGGAGGCTTCGCGTCCCCCAGGACGGGCAAGG < 41bp 1 0.228539874234431 1 0.464905232191086 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954448 . . 0 13 hm5C_associated_SNPs_13196 0 0 0 0 2 UHRF1 chr19:4954362 3'AG 4954362 Downstream 87bp
chr19 4954448 4954448 1 + G A rs17878253 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGGGAGGCTTCGCGTCCCCCAGGACGGGCAAGG < 41bp 1 0.228539874234431 1 0.464905232191086 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954448 . . 0 13 hm5C_associated_SNPs_13196 0 0 0 0 2 UHRF1 chr19:4954500 5'GT 4954500 Upstream 53bp
chr19 4954448 4954448 1 + G A rs17878253 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGGGAGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA < 41bp 1 0.532411306429006 1 0.395684033632278 experiment 0.935177387141989 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954448 . . 0 9 hm5C_associated_SNPs_13197 0 0 0 0 2 UHRF1 chr19:4954362 3'AG 4954362 Downstream 87bp
chr19 4954448 4954448 1 + G A rs17878253 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGGGAGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA < 41bp 1 0.532411306429006 1 0.395684033632278 experiment 0.935177387141989 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954448 . . 0 9 hm5C_associated_SNPs_13197 0 0 0 0 2 UHRF1 chr19:4954500 5'GT 4954500 Upstream 53bp
chr19 4954450 4954450 1 + G A rs201255730 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGGGGGACTTCGCGTCCCCCAGGACGGGCAAGG < 41bp 1 0.296207960422515 1 0.551333487033844 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954450 . 0.007 0 15 hm5C_associated_SNPs_13198 0 0 0 0 2 UHRF1 chr19:4954362 3'AG 4954362 Downstream 89bp
chr19 4954450 4954450 1 + G A rs201255730 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGGGGGACTTCGCGTCCCCCAGGACGGGCAAGG < 41bp 1 0.296207960422515 1 0.551333487033844 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954450 . 0.007 0 15 hm5C_associated_SNPs_13198 0 0 0 0 2 UHRF1 chr19:4954500 5'GT 4954500 Upstream 51bp
chr19 4954450 4954450 1 + G A rs201255730 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGGGGGACTTCGCGTCCCCCAGGACGGGCAAGGGCAA < 41bp 1 0.56266109879721 1 0.473664164543152 experiment 0.87467780240558 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954450 . 0.007 0 11 hm5C_associated_SNPs_13199 0 0 0 0 2 UHRF1 chr19:4954362 3'AG 4954362 Downstream 89bp
chr19 4954450 4954450 1 + G A rs201255730 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGGGGGACTTCGCGTCCCCCAGGACGGGCAAGGGCAA < 41bp 1 0.56266109879721 1 0.473664164543152 experiment 0.87467780240558 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954450 . 0.007 0 11 hm5C_associated_SNPs_13199 0 0 0 0 2 UHRF1 chr19:4954500 5'GT 4954500 Upstream 51bp
chr19 4954454 4954454 1 + C T rs2247238 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGGGGGGCTTTGCGTCCCCCAGGACGGGCAAGG < 41bp 1 0.286484043660557 1 0.40823820233345 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954454 . . 0 19 hm5C_associated_SNPs_13200 0 0 0 0 2 UHRF1 chr19:4954362 3'AG 4954362 Downstream 93bp
chr19 4954454 4954454 1 + C T rs2247238 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGGGGGGCTTTGCGTCCCCCAGGACGGGCAAGG < 41bp 1 0.286484043660557 1 0.40823820233345 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954454 . . 0 19 hm5C_associated_SNPs_13200 0 0 0 0 2 UHRF1 chr19:4954500 5'GT 4954500 Upstream 47bp
chr19 4954454 4954454 1 + C T rs2247238 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGGGGGGCTTTGCGTCCCCCAGGACGGGCAAGGGCAA < 41bp 1 0.576946396569887 1 0.532072484493256 experiment 0.846107206860226 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954454 . . 0 15 hm5C_associated_SNPs_13201 0 0 0 0 2 UHRF1 chr19:4954362 3'AG 4954362 Downstream 93bp
chr19 4954454 4954454 1 + C T rs2247238 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGGGGGGCTTTGCGTCCCCCAGGACGGGCAAGGGCAA < 41bp 1 0.576946396569887 1 0.532072484493256 experiment 0.846107206860226 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954454 . . 0 15 hm5C_associated_SNPs_13201 0 0 0 0 2 UHRF1 chr19:4954500 5'GT 4954500 Upstream 47bp
chr19 4954455 4954455 1 + G A rs2307209 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGGGGGGCTTCACGTCCCCCAGGACGGGCAAGG < 41bp 1 0.320151305684673 1 0.446729063987732 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954455 . 0.000 0 20 hm5C_associated_SNPs_13202 0 0 0 0 2 UHRF1 chr19:4954362 3'AG 4954362 Downstream 94bp
chr19 4954455 4954455 1 + G A rs2307209 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGGGGGGCTTCACGTCCCCCAGGACGGGCAAGG < 41bp 1 0.320151305684673 1 0.446729063987732 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954455 . 0.000 0 20 hm5C_associated_SNPs_13202 0 0 0 0 2 UHRF1 chr19:4954500 5'GT 4954500 Upstream 46bp
chr19 4954455 4954455 1 + G A rs2307209 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGGGGGGCTTCACGTCCCCCAGGACGGGCAAGGGCAA < 41bp 1 0.568857608953638 1 0.496842890977859 experiment 0.862284782092724 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954455 . 0.000 0 16 hm5C_associated_SNPs_13203 0 0 0 0 2 UHRF1 chr19:4954362 3'AG 4954362 Downstream 94bp
chr19 4954455 4954455 1 + G A rs2307209 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGGGGGGCTTCACGTCCCCCAGGACGGGCAAGGGCAA < 41bp 1 0.568857608953638 1 0.496842890977859 experiment 0.862284782092724 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954455 . 0.000 0 16 hm5C_associated_SNPs_13203 0 0 0 0 2 UHRF1 chr19:4954500 5'GT 4954500 Upstream 46bp
chr19 4954456 4954456 1 + C T rs374424470 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGGGGGGCTTCGTGTCCCCCAGGACGGGCAAGGGCAA < 41bp 1 0.642347912731724 1 0.354945659637451 experiment 0.715304174536551 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954456 . 0.000 0 17 hm5C_associated_SNPs_13204 0 0 0 0 2 UHRF1 chr19:4954362 3'AG 4954362 Downstream 95bp
chr19 4954456 4954456 1 + C T rs374424470 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGGGGGGCTTCGTGTCCCCCAGGACGGGCAAGGGCAA < 41bp 1 0.642347912731724 1 0.354945659637451 experiment 0.715304174536551 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954456 . 0.000 0 17 hm5C_associated_SNPs_13204 0 0 0 0 2 UHRF1 chr19:4954500 5'GT 4954500 Upstream 45bp
chr19 5135403 5135403 1 + G A rs558725727 5135388 + 5135368 5135408 41 GAGGCACCCATAGCCTCCCTCGGAAAGGGCTGCCCGGCCAC GAGGCACCCATAGCCTCCCTCGGAAAGGGCTGCCCAGCCAC < 41bp 1 0.650465308296163 1 0.955124139785767 experiment 0.699069383407673 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KDM4B ENSG00000127663 CDS Human protein_coding chr19:5135388 chr19:5135403 synonymous SNV . 0 36 hm5C_associated_SNPs_13206 0 0 1 0 1 KDM4B chr19:5135350 3'AG 5135350 Downstream 54bp
chr19 5690302 5690302 1 + C T rs532295847 5690310 + 5690290 5690330 41 TCCGCGCGGCGCCAGCCCTTCCGCCACGGCCGTCTCTGGAG TCCGCGCGGCGCTAGCCCTTCCGCCACGGCCGTCTCTGGAG < 41bp 1 0.276772809601521 1 0.533714652061462 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL36 ENSG00000130255 UTR5 Human protein_coding chr19:5690310 chr19:5690302 . . 0 13 hm5C_associated_SNPs_13208 0 0 1 0 1 RPL36 chr19:5690338 5'GT 5690338 Upstream 37bp
chr19 5690304 5690304 1 + G A rs3810220 5690310 + 5690290 5690330 41 TCCGCGCGGCGCCAGCCCTTCCGCCACGGCCGTCTCTGGAG TCCGCGCGGCGCCAACCCTTCCGCCACGGCCGTCTCTGGAG < 41bp 1 0.286615175026743 1 0.441479861736298 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL36 ENSG00000130255 UTR5 Human protein_coding chr19:5690310 chr19:5690304 . . 0 15 hm5C_associated_SNPs_13209 0 0 1 0 1 RPL36 chr19:5690338 5'GT 5690338 Upstream 35bp
chr19 5690314 5690314 1 + C G rs10419745 5690310 + 5690290 5690330 41 TCCGCGCGGCGCCAGCCCTTCCGCCACGGCCGTCTCTGGAG TCCGCGCGGCGCCAGCCCTTCCGCGACGGCCGTCTCTGGAG < 41bp 1 0.592508365149998 1 0.437264114618301 experiment 0.814983269700003 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL36 ENSG00000130255 UTR5 Human protein_coding chr19:5690310 chr19:5690314 . . 0 25 hm5C_associated_SNPs_13210 0 0 1 0 1 RPL36 chr19:5690338 5'GT 5690338 Upstream 25bp
chr19 5691641 5691641 1 + C G rs201621814 5691640 + 5691620 5691660 41 CAAGAAAGACTGAGCCCCTCCCCTGCCCTCTCCCTGAAATA CAAGAAAGACTGAGCCCCTCCGCTGCCCTCTCCCTGAAATA < 41bp 1 0.329942344270164 1 0.357696801424026 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL36 ENSG00000130255 UTR3 Human protein_coding chr19:5691640 chr19:5691641 . . 0 22 hm5C_associated_SNPs_13218 0 0 1 0 1 RPL36 chr19:5691543 3'AG 5691543 Downstream 99bp
chr19 5691641 5691641 1 + C G rs201621814 5691642 + 5691622 5691662 41 AGAAAGACTGAGCCCCTCCCCTGCCCTCTCCCTGAAATAAA AGAAAGACTGAGCCCCTCCGCTGCCCTCTCCCTGAAATAAA < 41bp 1 0.44181736344783 1 0.30493700504303 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL36 ENSG00000130255 UTR3 Human protein_coding chr19:5691642 chr19:5691641 . . 0 20 hm5C_associated_SNPs_13219 0 0 1 0 1 RPL36 chr19:5691543 3'AG 5691543 Downstream 99bp
chr19 6151723 6151723 1 + T C rs34245738 6151718 + 6151698 6151738 41 GTTTGCTTTTTCCTTCCCAGCTGGGTTTGGAGCGTTTCCAC GTTTGCTTTTTCCTTCCCAGCTGGGCTTGGAGCGTTTCCAC < 41bp 1 0.727195228144896 1 0.515900552272797 experiment 0.545609543710207 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ACSBG2 ENSG00000130377 CDS Human protein_coding chr19:6151718 chr19:6151723 synonymous SNV . 0 26 hm5C_associated_SNPs_13222 0 0 0 0 2 ACSBG2 chr19:6151718 3'AG 6151718 Downstream 6bp
chr19 6151723 6151723 1 + T C rs34245738 6151718 + 6151698 6151738 41 GTTTGCTTTTTCCTTCCCAGCTGGGTTTGGAGCGTTTCCAC GTTTGCTTTTTCCTTCCCAGCTGGGCTTGGAGCGTTTCCAC < 41bp 1 0.727195228144896 1 0.515900552272797 experiment 0.545609543710207 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ACSBG2 ENSG00000130377 CDS Human protein_coding chr19:6151718 chr19:6151723 synonymous SNV . 0 26 hm5C_associated_SNPs_13222 0 0 0 0 2 ACSBG2 chr19:6151806 5'GT 6151806 Upstream 84bp
chr19 6742999 6742999 1 + C T rs148560112 6743009 + 6742989 6743029 41 AACAGTCCTTCGTACAGATTCTCCAGGAGGTGAATGACTTT AACAGTCCTTTGTACAGATTCTCCAGGAGGTGAATGACTTT < 41bp 1 0.75280090873801 1 0.820325314998627 experiment 0.494398182523981 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6743009 chr19:6742999 synonymous SNV . 0 11 hm5C_associated_SNPs_13223 0 0 1 0 1 TRIP10 chr19:6742978 3'AG 6742978 Downstream 22bp
chr19 7528734 7528734 1 + A G rs2287918 7528733 + 7528713 7528753 41 TCCAGAGCCTGATCTGCAGGCAGCTGGGCAGCGCCAACGGC TCCAGAGCCTGATCTGCAGGCGGCTGGGCAGCGCCAACGGC < 41bp 1 0.408565275170329 1 0.444900244474411 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7528733 chr19:7528734 nonsynonymous SNV 0.517 0 22 hm5C_associated_SNPs_13224 0 0 0 0 1 ARHGEF18 chr19:7528704 3'AG 7528704 Downstream 31bp
chr19 7528744 7528744 1 + C T rs138113892 7528733 + 7528713 7528753 41 TCCAGAGCCTGATCTGCAGGCAGCTGGGCAGCGCCAACGGC TCCAGAGCCTGATCTGCAGGCAGCTGGGCAGTGCCAACGGC < 41bp 1 0.39179098458561 1 0.515252530574799 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7528733 chr19:7528744 synonymous SNV . 0 32 hm5C_associated_SNPs_13225 0 0 0 0 1 ARHGEF18 chr19:7528704 3'AG 7528704 Downstream 41bp
chr19 7598726 7598726 1 + C A rs143176884 7598730 + 7598710 7598750 41 CCCTGGACTGCAGAGACCCCCGCCCCCGACCCCGCTTATTT CCCTGGACTGCAGAGAACCCCGCCCCCGACCCCGCTTATTT < 41bp 1 0.364824353846499 1 0.335457921028137 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MCOLN1 ENSG00000090674 CDS Human other chr19:7598730 chr19:7598726 unknown . 0 17 hm5C_associated_SNPs_13226 0 0 1 0 1 MCOLN1 chr19:7598645 3'AG 7598645 Downstream 82bp
chr19 7598726 7598726 1 + C A rs143176884 7598732 + 7598712 7598752 41 CTGGACTGCAGAGACCCCCGCCCCCGACCCCGCTTATTTAT CTGGACTGCAGAGAACCCCGCCCCCGACCCCGCTTATTTAT < 41bp 1 0.12950325633578 1 0.0971560776233673 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCOLN1 ENSG00000090674 CDS Human other chr19:7598732 chr19:7598726 unknown . 0 15 hm5C_associated_SNPs_13227 0 0 1 0 1 MCOLN1 chr19:7598645 3'AG 7598645 Downstream 82bp
chr19 7626456 7626456 1 + G A rs561526950 7626465 + 7626445 7626485 41 CTGAGGACCTCGACAGGGGTCACCCCCTCCCTCCCACCCCT CTGAGGACCTCAACAGGGGTCACCCCCTCCCTCCCACCCCT < 41bp 1 0.392248991184231 1 0.0699202716350555 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626465 chr19:7626456 . . 0 12 hm5C_associated_SNPs_13228 1 0 0 1 1 PNPLA6 chr19:7626374 3'AG 7626374 Downstream 83bp
chr19 7626456 7626456 1 + G A rs561526950 7626467 + 7626447 7626487 41 GAGGACCTCGACAGGGGTCACCCCCTCCCTCCCACCCCTGG GAGGACCTCAACAGGGGTCACCCCCTCCCTCCCACCCCTGG < 41bp 1 0.278347963693536 1 0.0767365396022797 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626467 chr19:7626456 . . 0 10 hm5C_associated_SNPs_13229 1 0 0 1 1 PNPLA6 chr19:7626374 3'AG 7626374 Downstream 83bp
chr19 7626456 7626456 1 + G A rs561526950 7626468 + 7626448 7626488 41 AGGACCTCGACAGGGGTCACCCCCTCCCTCCCACCCCTGGA AGGACCTCAACAGGGGTCACCCCCTCCCTCCCACCCCTGGA < 41bp 1 0.180482571140545 1 0.0827329754829407 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626468 chr19:7626456 . . 0 9 hm5C_associated_SNPs_13230 1 0 0 1 1 PNPLA6 chr19:7626374 3'AG 7626374 Downstream 83bp
chr19 7626456 7626456 1 + G A rs561526950 7626469 + 7626449 7626489 41 GGACCTCGACAGGGGTCACCCCCTCCCTCCCACCCCTGGAC GGACCTCAACAGGGGTCACCCCCTCCCTCCCACCCCTGGAC < 41bp 1 0.10705820722741 1 0.234183758497238 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626469 chr19:7626456 . . 0 8 hm5C_associated_SNPs_13231 1 0 0 1 1 PNPLA6 chr19:7626374 3'AG 7626374 Downstream 83bp
chr19 7626456 7626456 1 + G A rs561526950 7626470 + 7626450 7626490 41 GACCTCGACAGGGGTCACCCCCTCCCTCCCACCCCTGGACT GACCTCAACAGGGGTCACCCCCTCCCTCCCACCCCTGGACT < 41bp 1 0.0696652263829412 1 0.370857298374176 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626470 chr19:7626456 . . 0 7 hm5C_associated_SNPs_13232 1 0 0 1 1 PNPLA6 chr19:7626374 3'AG 7626374 Downstream 83bp
chr19 7626456 7626456 1 + G A rs561526950 7626471 + 7626451 7626491 41 ACCTCGACAGGGGTCACCCCCTCCCTCCCACCCCTGGACTG ACCTCAACAGGGGTCACCCCCTCCCTCCCACCCCTGGACTG < 41bp 1 0.432188403314111 1 0.700345516204834 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626471 chr19:7626456 . . 0 6 hm5C_associated_SNPs_13233 1 0 0 1 1 PNPLA6 chr19:7626374 3'AG 7626374 Downstream 83bp
chr19 7626456 7626456 1 + G A rs561526950 7626473 + 7626453 7626493 41 CTCGACAGGGGTCACCCCCTCCCTCCCACCCCTGGACTGGG CTCAACAGGGGTCACCCCCTCCCTCCCACCCCTGGACTGGG < 41bp 1 0.1055462861284 1 0.549901723861694 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626473 chr19:7626456 . . 0 4 hm5C_associated_SNPs_13234 1 0 0 1 1 PNPLA6 chr19:7626374 3'AG 7626374 Downstream 83bp
chr19 7626456 7626456 1 + G A rs561526950 7626474 + 7626454 7626494 41 TCGACAGGGGTCACCCCCTCCCTCCCACCCCTGGACTGGGC TCAACAGGGGTCACCCCCTCCCTCCCACCCCTGGACTGGGC < 41bp 1 0.079026846034375 1 0.404252171516418 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626474 chr19:7626456 . . 0 3 hm5C_associated_SNPs_13235 1 0 0 1 1 PNPLA6 chr19:7626374 3'AG 7626374 Downstream 83bp
chr19 7696198 7696198 1 + G A rs113124654 7696203 + 7696183 7696223 41 AAGCGGATCCCACGCGGACCCCTTTGTAATTGGCAGGGGGC AAGCGGATCCCACGCAGACCCCTTTGTAATTGGCAGGGGGC < 41bp 1 0.0660924405970532 1 0.0641557276248932 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PET100 ENSG00000229833 UTR3 Human protein_coding chr19:7696203 chr19:7696198 . . 0 16 hm5C_associated_SNPs_13238 0 0 1 0 2 PET100 chr19:7696118 3'AG 7696118 Downstream 81bp
chr19 7696198 7696198 1 + G A rs113124654 7696203 + 7696183 7696223 41 AAGCGGATCCCACGCGGACCCCTTTGTAATTGGCAGGGGGC AAGCGGATCCCACGCAGACCCCTTTGTAATTGGCAGGGGGC < 41bp 1 0.0660924405970532 1 0.0641557276248932 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PET100 ENSG00000229833 UTR3 Human protein_coding chr19:7696203 chr19:7696198 . . 0 16 hm5C_associated_SNPs_13238 0 0 1 0 2 PET100 chr19:7696207 5'GT 7696207 Upstream 10bp
chr19 7712708 7712708 1 + G A rs28464386 7712710 + 7712690 7712730 41 GCCCTGACCCCTGGCCCCGCCCCCTACCCCTCCCTTTCCAG GCCCTGACCCCTGGCCCCACCCCCTACCCCTCCCTTTCCAG < 41bp 1 0.328296787328973 1 0.18964084982872 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control STXBP2 ENSG00000076944 UTR3 Human protein_coding chr19:7712710 chr19:7712708 . . 0 19 hm5C_associated_SNPs_13239 3 0 1 0 1 STXBP2 chr19:7712611 3'AG 7712611 Downstream 98bp
chr19 7712708 7712708 1 + G A rs28464386 7712711 + 7712691 7712731 41 CCCTGACCCCTGGCCCCGCCCCCTACCCCTCCCTTTCCAGA CCCTGACCCCTGGCCCCACCCCCTACCCCTCCCTTTCCAGA < 41bp 1 0.339275082626802 1 0.122949033975601 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control STXBP2 ENSG00000076944 UTR3 Human protein_coding chr19:7712711 chr19:7712708 . . 0 18 hm5C_associated_SNPs_13240 3 0 1 0 1 STXBP2 chr19:7712611 3'AG 7712611 Downstream 98bp
chr19 7745745 7745745 1 + G A rs116496345 7745733 + 7745713 7745753 41 CCTTTTACGGCGCCGTAAAGCAGCTCGGCCGAGCAGACTGC CCTTTTACGGCGCCGTAAAGCAGCTCGGCCGAACAGACTGC < 41bp 1 0.656108077081147 1 0.701391577720642 experiment 0.687783845837705 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TRAPPC5 ENSG00000181029 UTR5 Human protein_coding chr19:7745733 chr19:7745745 . . 0 33 hm5C_associated_SNPs_13241 0 0 1 0 1 TRAPPC5 chr19:7745764 5'GT 7745764 Upstream 20bp
chr19 8320529 8320529 1 + G A rs140285977 8320515 + 8320495 8320535 41 AGCTGTCTCTCCTGGCCGCCCAGTGTGGCCTCACGCTGCAG AGCTGTCTCTCCTGGCCGCCCAGTGTGGCCTCACACTGCAG < 41bp 1 0.547090366077393 1 0.371229916810989 experiment 0.905819267845213 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CERS4 ENSG00000090661 CDS Human protein_coding chr19:8320515 chr19:8320529 synonymous SNV . 0 35 hm5C_associated_SNPs_13249 0 0 0 0 2 CERS4 chr19:8320491 3'AG 8320491 Downstream 39bp
chr19 8320529 8320529 1 + G A rs140285977 8320515 + 8320495 8320535 41 AGCTGTCTCTCCTGGCCGCCCAGTGTGGCCTCACGCTGCAG AGCTGTCTCTCCTGGCCGCCCAGTGTGGCCTCACACTGCAG < 41bp 1 0.547090366077393 1 0.371229916810989 experiment 0.905819267845213 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CERS4 ENSG00000090661 CDS Human protein_coding chr19:8320515 chr19:8320529 synonymous SNV . 0 35 hm5C_associated_SNPs_13249 0 0 0 0 2 CERS4 chr19:8320609 5'GT 8320609 Upstream 81bp
chr19 8321885 8321885 1 + T C rs150540280 8321902 + 8321882 8321922 41 CCTTCTCCTACAGTGCCAACCTGCTGCGCATTGGCTCTCTG CCTCCTCCTACAGTGCCAACCTGCTGCGCATTGGCTCTCTG < 41bp 1 0.476736181445922 1 0.418733417987823 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS4 ENSG00000090661 CDS Human protein_coding chr19:8321902 chr19:8321885 nonsynonymous SNV 0.451 3 4 hm5C_associated_SNPs_13250 0 0 0 0 2 CERS4 chr19:8321833 3'AG 8321833 Downstream 53bp
chr19 8321885 8321885 1 + T C rs150540280 8321902 + 8321882 8321922 41 CCTTCTCCTACAGTGCCAACCTGCTGCGCATTGGCTCTCTG CCTCCTCCTACAGTGCCAACCTGCTGCGCATTGGCTCTCTG < 41bp 1 0.476736181445922 1 0.418733417987823 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS4 ENSG00000090661 CDS Human protein_coding chr19:8321902 chr19:8321885 nonsynonymous SNV 0.451 3 4 hm5C_associated_SNPs_13250 0 0 0 0 2 CERS4 chr19:8321961 5'GT 8321961 Upstream 77bp
chr19 8478250 8478250 1 + G C rs890849 8478232 + 8478212 8478252 41 GAGCTAGTGGCGCCGACGGGCCGGGCCGGGCCGGGACCGGG GAGCTAGTGGCGCCGACGGGCCGGGCCGGGCCGGGACCCGG < 41bp 1 0.772318320967931 1 0.625485181808472 experiment 0.455363358064139 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MARCH2 ENSG00000099785 UTR5 Human protein_coding chr19:8478232 chr19:8478250 . . 0 39 hm5C_associated_SNPs_13251 0 0 1 0 1 MARCH2 chr19:8478304 5'GT 8478304 Upstream 55bp
chr19 8478291 8478291 1 + C T rs530839730 8478285 + 8478265 8478305 41 CGAGGGGCCTGTGCGGCCGCCCGGCCCGGCCGCGGATCAGG CGAGGGGCCTGTGCGGCCGCCCGGCCTGGCCGCGGATCAGG < 41bp 1 0.461141302288917 1 0.420229196548462 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MARCH2 ENSG00000099785 UTR5 Human protein_coding chr19:8478285 chr19:8478291 . . 0 27 hm5C_associated_SNPs_13252 0 0 1 0 1 MARCH2 chr19:8478304 5'GT 8478304 Upstream 14bp
chr19 8478291 8478291 1 + C T rs530839730 8478286 + 8478266 8478306 41 GAGGGGCCTGTGCGGCCGCCCGGCCCGGCCGCGGATCAGGT GAGGGGCCTGTGCGGCCGCCCGGCCTGGCCGCGGATCAGGT < 41bp 1 0.572029994939782 1 0.806360960006714 experiment 0.855940010120437 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MARCH2 ENSG00000099785 UTR5 Human protein_coding chr19:8478286 chr19:8478291 . . 0 26 hm5C_associated_SNPs_13253 0 0 1 0 1 MARCH2 chr19:8478304 5'GT 8478304 Upstream 14bp
chr19 8478291 8478291 1 + C T rs530839730 8478289 + 8478269 8478309 41 GGGCCTGTGCGGCCGCCCGGCCCGGCCGCGGATCAGGTAGG GGGCCTGTGCGGCCGCCCGGCCTGGCCGCGGATCAGGTAGG < 41bp 1 0.308109978577612 1 0.141516268253326 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARCH2 ENSG00000099785 UTR5 Human protein_coding chr19:8478289 chr19:8478291 . . 0 23 hm5C_associated_SNPs_13254 0 0 1 0 1 MARCH2 chr19:8478304 5'GT 8478304 Upstream 14bp
chr19 8478291 8478291 1 + C T rs530839730 8478290 + 8478270 8478310 41 GGCCTGTGCGGCCGCCCGGCCCGGCCGCGGATCAGGTAGGC GGCCTGTGCGGCCGCCCGGCCTGGCCGCGGATCAGGTAGGC < 41bp 1 0.698068467629333 1 0.120095521211624 experiment 0.603863064741334 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARCH2 ENSG00000099785 UTR5 Human protein_coding chr19:8478290 chr19:8478291 . . 0 22 hm5C_associated_SNPs_13255 0 0 1 0 1 MARCH2 chr19:8478304 5'GT 8478304 Upstream 14bp
chr19 8478291 8478291 1 + C T rs530839730 8478294 + 8478274 8478314 41 TGTGCGGCCGCCCGGCCCGGCCGCGGATCAGGTAGGCACGG TGTGCGGCCGCCCGGCCTGGCCGCGGATCAGGTAGGCACGG < 41bp 1 0.736692450122232 1 0.569111347198486 experiment 0.526615099755537 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARCH2 ENSG00000099785 UTR5 Human protein_coding chr19:8478294 chr19:8478291 . . 0 18 hm5C_associated_SNPs_13256 0 0 1 0 1 MARCH2 chr19:8478304 5'GT 8478304 Upstream 14bp
chr19 10794149 10794149 1 + C T rs143757354 10794136 + 10794116 10794156 41 TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTTGCCCTTG < 41bp 1 0.412219525376473 1 0.0529824793338776 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794136 chr19:10794149 synonymous SNV . 0 34 hm5C_associated_SNPs_13283 0 0 1 0 1 ILF3 chr19:10794218 5'GT 10794218 Upstream 70bp
chr19 10794149 10794149 1 + C T rs143757354 10794142 + 10794122 10794162 41 AGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTGATGCCA AGAAAAGCTTTTCCCTGACACCCCTCTTGCCCTTGATGCCA < 41bp 1 0.189602480289203 1 0.0576573312282562 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794142 chr19:10794149 synonymous SNV . 0 28 hm5C_associated_SNPs_13284 0 0 1 0 1 ILF3 chr19:10794218 5'GT 10794218 Upstream 70bp
chr19 10886512 10886512 1 + T C rs77702567 10886497 + 10886477 10886517 41 CAGTTCATCAGCCGGGAGAGCAGCCTCATTCTGGCTGTCAC CAGTTCATCAGCCGGGAGAGCAGCCTCATTCTGGCCGTCAC < 41bp 1 0.263093490905186 1 0.238194972276688 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10886497 chr19:10886512 synonymous SNV . 0 36 hm5C_associated_SNPs_13296 4 0 1 0 1 DNM2 chr19:10886582 5'GT 10886582 Upstream 71bp
chr19 10893735 10893735 1 + C A rs3745674 10893721 + 10893701 10893741 41 CTGGCAGCTGAGAGGAAGTTCTTCCTCTCCCACCCGGCCTA CTGGCAGCTGAGAGGAAGTTCTTCCTCTCCCACCAGGCCTA < 41bp 1 0.157413493571498 1 0.0808134078979492 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10893721 chr19:10893735 nonsynonymous SNV 0.993 4 35 hm5C_associated_SNPs_13297 0 0 1 0 1 DNM2 chr19:10893796 5'GT 10893796 Upstream 62bp
chr19 10893736 10893736 1 + G A rs199976453 10893721 + 10893701 10893741 41 CTGGCAGCTGAGAGGAAGTTCTTCCTCTCCCACCCGGCCTA CTGGCAGCTGAGAGGAAGTTCTTCCTCTCCCACCCAGCCTA < 41bp 1 0.172533653464937 1 0.0671450197696686 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10893721 chr19:10893736 synonymous SNV . 0 36 hm5C_associated_SNPs_13298 3 0 1 0 1 DNM2 chr19:10893796 5'GT 10893796 Upstream 61bp
chr19 10893739 10893739 1 + C A rs530978513 10893721 + 10893701 10893741 41 CTGGCAGCTGAGAGGAAGTTCTTCCTCTCCCACCCGGCCTA CTGGCAGCTGAGAGGAAGTTCTTCCTCTCCCACCCGGCATA < 41bp 1 0.153271935385344 1 0.0453066825866699 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10893721 chr19:10893739 synonymous SNV . 0 39 hm5C_associated_SNPs_13299 0 0 1 0 1 DNM2 chr19:10893796 5'GT 10893796 Upstream 58bp
chr19 11105593 11105593 1 + A G rs17001075 11105582 + 11105562 11105602 41 TCACAGGCAAAATCCAGAAGCTGACCAAGGCAGTGGCCACG TCACAGGCAAAATCCAGAAGCTGACCAAGGCGGTGGCCACG < 41bp 1 0.153568184037677 1 0.149001628160477 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11105582 chr19:11105593 synonymous SNV . 0 32 hm5C_associated_SNPs_13327 3 0 1 0 2 SMARCA4 chr19:11105504 3'AG 11105504 Downstream 90bp
chr19 11105593 11105593 1 + A G rs17001075 11105582 + 11105562 11105602 41 TCACAGGCAAAATCCAGAAGCTGACCAAGGCAGTGGCCACG TCACAGGCAAAATCCAGAAGCTGACCAAGGCGGTGGCCACG < 41bp 1 0.153568184037677 1 0.149001628160477 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11105582 chr19:11105593 synonymous SNV . 0 32 hm5C_associated_SNPs_13327 3 0 1 0 2 SMARCA4 chr19:11105677 5'GT 11105677 Upstream 85bp
chr19 11105608 11105608 1 + T C rs7935 11105627 + 11105607 11105647 41 ATGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACGAGCGG ACGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACGAGCGG < 41bp 1 0.660867964669002 1 0.659475326538086 experiment 0.678264070661996 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11105627 chr19:11105608 synonymous SNV . 0 2 hm5C_associated_SNPs_13328 2 0 1 0 1 SMARCA4 chr19:11105677 5'GT 11105677 Upstream 70bp
chr19 11123738 11123738 1 + C T rs28997580 11123747 + 11123727 11123767 41 ATCACGTACCTCATGGAGCACAAACGCATCAATGGGCCCTT ATCACGTACCTTATGGAGCACAAACGCATCAATGGGCCCTT < 41bp 1 0.143761652454941 1 0.0921593904495239 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11123747 chr19:11123738 synonymous SNV . 0 12 hm5C_associated_SNPs_13329 3 0 1 0 1 SMARCA4 chr19:11123788 5'GT 11123788 Upstream 51bp
chr19 11145649 11145649 1 + C G rs377720149 11145668 + 11145648 11145688 41 TCATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGAC TGATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGAC < 41bp 1 0.0801047150169882 1 0.114065885543823 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145668 chr19:11145649 synonymous SNV . 0 2 hm5C_associated_SNPs_13330 0 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 60bp
chr19 11145649 11145649 1 + C G rs377720149 11145669 + 11145649 11145689 41 CATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACG GATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACG < 41bp 1 0.233671459424592 1 0.183198243379593 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145669 chr19:11145649 synonymous SNV . 0 1 hm5C_associated_SNPs_13331 0 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 60bp
chr19 11242005 11242005 1 + A G rs72658871 11242009 + 11241989 11242029 41 GTGAACATCTGCCTGGAGTCCCGTCCCTGCCCAGAACCCTT GTGAACATCTGCCTGGGGTCCCGTCCCTGCCCAGAACCCTT < 41bp 1 0.0799558796173325 1 0.229893982410431 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LDLR ENSG00000130164 CDS Human protein_coding chr19:11242009 chr19:11242005 synonymous SNV . 0 17 hm5C_associated_SNPs_13335 1 0 1 0 2 LDLR chr19:11241957 3'AG 11241957 Downstream 49bp
chr19 11242005 11242005 1 + A G rs72658871 11242009 + 11241989 11242029 41 GTGAACATCTGCCTGGAGTCCCGTCCCTGCCCAGAACCCTT GTGAACATCTGCCTGGGGTCCCGTCCCTGCCCAGAACCCTT < 41bp 1 0.0799558796173325 1 0.229893982410431 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LDLR ENSG00000130164 CDS Human protein_coding chr19:11242009 chr19:11242005 synonymous SNV . 0 17 hm5C_associated_SNPs_13335 1 0 1 0 2 LDLR chr19:11241963 3'AG 11241963 Downstream 43bp
chr19 11553281 11553281 1 + T C rs62638749 11553280 + 11553260 11553300 41 GCGGACAGTGAAGGAGGAAGCTGAGAAGCCAGAGAGAGAGG GCGGACAGTGAAGGAGGAAGCCGAGAAGCCAGAGAGAGAGG < 41bp 1 0.494311556746963 1 0.514611899852753 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553280 chr19:11553281 synonymous SNV . 0 22 hm5C_associated_SNPs_13338 2 0 1 0 2 PRKCSH chr19:11553201 3'AG 11553201 Downstream 81bp
chr19 11553281 11553281 1 + T C rs62638749 11553280 + 11553260 11553300 41 GCGGACAGTGAAGGAGGAAGCTGAGAAGCCAGAGAGAGAGG GCGGACAGTGAAGGAGGAAGCCGAGAAGCCAGAGAGAGAGG < 41bp 1 0.494311556746963 1 0.514611899852753 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553280 chr19:11553281 synonymous SNV . 0 22 hm5C_associated_SNPs_13338 2 0 1 0 2 PRKCSH chr19:11553330 5'GT 11553330 Upstream 50bp
chr19 11553281 11553281 1 + T C rs62638749 11553288 + 11553268 11553308 41 TGAAGGAGGAAGCTGAGAAGCCAGAGAGAGAGGCCAAAGAG TGAAGGAGGAAGCCGAGAAGCCAGAGAGAGAGGCCAAAGAG < 41bp 1 0.778605148198907 1 0.361094295978546 experiment 0.442789703602187 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553288 chr19:11553281 synonymous SNV . 0 14 hm5C_associated_SNPs_13339 2 0 1 0 2 PRKCSH chr19:11553201 3'AG 11553201 Downstream 81bp
chr19 11553281 11553281 1 + T C rs62638749 11553288 + 11553268 11553308 41 TGAAGGAGGAAGCTGAGAAGCCAGAGAGAGAGGCCAAAGAG TGAAGGAGGAAGCCGAGAAGCCAGAGAGAGAGGCCAAAGAG < 41bp 1 0.778605148198907 1 0.361094295978546 experiment 0.442789703602187 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553288 chr19:11553281 synonymous SNV . 0 14 hm5C_associated_SNPs_13339 2 0 1 0 2 PRKCSH chr19:11553330 5'GT 11553330 Upstream 50bp
chr19 11553281 11553281 1 + T C rs62638749 11553289 + 11553269 11553309 41 GAAGGAGGAAGCTGAGAAGCCAGAGAGAGAGGCCAAAGAGC GAAGGAGGAAGCCGAGAAGCCAGAGAGAGAGGCCAAAGAGC < 41bp 1 0.655672164622149 1 0.765582799911499 experiment 0.688655670755703 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553289 chr19:11553281 synonymous SNV . 0 13 hm5C_associated_SNPs_13340 2 0 1 0 2 PRKCSH chr19:11553201 3'AG 11553201 Downstream 81bp
chr19 11553281 11553281 1 + T C rs62638749 11553289 + 11553269 11553309 41 GAAGGAGGAAGCTGAGAAGCCAGAGAGAGAGGCCAAAGAGC GAAGGAGGAAGCCGAGAAGCCAGAGAGAGAGGCCAAAGAGC < 41bp 1 0.655672164622149 1 0.765582799911499 experiment 0.688655670755703 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553289 chr19:11553281 synonymous SNV . 0 13 hm5C_associated_SNPs_13340 2 0 1 0 2 PRKCSH chr19:11553330 5'GT 11553330 Upstream 50bp
chr19 11559907 11559907 1 + A G rs34351170 11559894 + 11559874 11559914 41 CCCTGTGTCTCTCACAGCACCTGGGGCTCATGGATTGGCCC CCCTGTGTCTCTCACAGCACCTGGGGCTCATGGGTTGGCCC < 41bp 1 0.773682118776008 1 0.734150290489197 experiment 0.452635762447985 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11559894 chr19:11559907 nonsynonymous SNV 0.957 1 34 hm5C_associated_SNPs_13341 2 0 1 0 2 PRKCSH chr19:11559891 3'AG 11559891 Downstream 17bp
chr19 11559907 11559907 1 + A G rs34351170 11559894 + 11559874 11559914 41 CCCTGTGTCTCTCACAGCACCTGGGGCTCATGGATTGGCCC CCCTGTGTCTCTCACAGCACCTGGGGCTCATGGGTTGGCCC < 41bp 1 0.773682118776008 1 0.734150290489197 experiment 0.452635762447985 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11559894 chr19:11559907 nonsynonymous SNV 0.957 1 34 hm5C_associated_SNPs_13341 2 0 1 0 2 PRKCSH chr19:11559990 5'GT 11559990 Upstream 84bp
chr19 12014739 12014739 1 + G A rs141687609 12014742 + 12014722 12014762 41 AAAAGTTGGAAAGACCAGAACATTGAATATGAGTACCAAAA AAAAGTTGGAAAGACCAAAACATTGAATATGAGTACCAAAA < 41bp 1 0.146984359771516 1 0.198817074298859 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF69 ENSG00000198429 CDS Human protein_coding chr19:12014742 chr19:12014739 synonymous SNV . 0 18 hm5C_associated_SNPs_13342 0 0 0 0 2 ZNF69 chr19:12014720 3'AG 12014720 Downstream 20bp
chr19 12014739 12014739 1 + G A rs141687609 12014742 + 12014722 12014762 41 AAAAGTTGGAAAGACCAGAACATTGAATATGAGTACCAAAA AAAAGTTGGAAAGACCAAAACATTGAATATGAGTACCAAAA < 41bp 1 0.146984359771516 1 0.198817074298859 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF69 ENSG00000198429 CDS Human protein_coding chr19:12014742 chr19:12014739 synonymous SNV . 0 18 hm5C_associated_SNPs_13342 0 0 0 0 2 ZNF69 chr19:12014780 5'GT 12014780 Upstream 42bp
chr19 12923943 12923943 1 + C T rs147131347 12923946 + 12923926 12923966 41 CACGTGGAGCCTGTGTTCGGCTTCCCCCAGTTTGTCCGGTT CACGTGGAGCCTGTGTTTGGCTTCCCCCAGTTTGTCCGGTT < 41bp 1 0.162295872250755 1 0.0710262358188629 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12923946 chr19:12923943 synonymous SNV . 0 18 hm5C_associated_SNPs_13351 0 0 1 0 2 RNASEH2A chr19:12923897 3'AG 12923897 Downstream 47bp
chr19 12923943 12923943 1 + C T rs147131347 12923946 + 12923926 12923966 41 CACGTGGAGCCTGTGTTCGGCTTCCCCCAGTTTGTCCGGTT CACGTGGAGCCTGTGTTTGGCTTCCCCCAGTTTGTCCGGTT < 41bp 1 0.162295872250755 1 0.0710262358188629 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12923946 chr19:12923943 synonymous SNV . 0 18 hm5C_associated_SNPs_13351 0 0 1 0 2 RNASEH2A chr19:12924020 5'GT 12924020 Upstream 78bp
chr19 13010516 13010516 1 + G A rs113720193 13010519 + 13010499 13010539 41 ATTTCCCTTCTGAAGTCGTTCAGATGTGTTCCTTAAAAAGA ATTTCCCTTCTGAAGTCATTCAGATGTGTTCCTTAAAAAGA < 41bp 1 0.470172972424154 1 0.503603160381317 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13010519 chr19:13010516 nonsynonymous SNV . 0 18 hm5C_associated_SNPs_13352 0 0 1 1 1 GCDH chr19:13010514 3'AG 13010514 Downstream 3bp
chr19 13010520 13010520 1 + A G rs8012 13010519 + 13010499 13010539 41 ATTTCCCTTCTGAAGTCGTTCAGATGTGTTCCTTAAAAAGA ATTTCCCTTCTGAAGTCGTTCGGATGTGTTCCTTAAAAAGA < 41bp 1 0.409785217854589 1 0.405917853116989 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13010519 chr19:13010520 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_13353 2 1 1 1 1 GCDH chr19:13010514 3'AG 13010514 Downstream 7bp
chr19 13051170 13051170 1 + C G rs79497711 13051158 + 13051138 13051178 41 GAGTCCGGCTCCTTGGAAGACGATTGGGACTTCCTGCCACC GAGTCCGGCTCCTTGGAAGACGATTGGGACTTGCTGCCACC < 41bp 1 0.334613868041227 1 0.546430230140686 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051158 chr19:13051170 nonsynonymous SNV 0.994 1 33 hm5C_associated_SNPs_13356 0 0 1 0 1 CALR chr19:13051266 5'GT 13051266 Upstream 97bp
chr19 13051170 13051170 1 + C G rs79497711 13051171 + 13051151 13051191 41 TGGAAGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAG TGGAAGACGATTGGGACTTGCTGCCACCCAAGAAGATAAAG < 41bp 1 0.331920717308269 1 0.180354535579681 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051171 chr19:13051170 nonsynonymous SNV 0.994 1 20 hm5C_associated_SNPs_13357 0 0 1 0 1 CALR chr19:13051266 5'GT 13051266 Upstream 97bp
chr19 13051170 13051170 1 + C G rs79497711 13051175 + 13051155 13051195 41 AGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAGGATC AGACGATTGGGACTTGCTGCCACCCAAGAAGATAAAGGATC < 41bp 1 0.394833471703001 1 0.134887158870697 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051175 chr19:13051170 nonsynonymous SNV 0.994 1 16 hm5C_associated_SNPs_13358 0 0 1 0 1 CALR chr19:13051266 5'GT 13051266 Upstream 97bp
chr19 13051188 13051188 1 + A G rs534189742 13051171 + 13051151 13051191 41 TGGAAGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAG TGGAAGACGATTGGGACTTCCTGCCACCCAAGAAGATGAAG < 41bp 1 0.364402948365459 1 0.286785662174225 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051171 chr19:13051188 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_13359 0 0 1 0 1 CALR chr19:13051266 5'GT 13051266 Upstream 79bp
chr19 13051188 13051188 1 + A G rs534189742 13051175 + 13051155 13051195 41 AGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAGGATC AGACGATTGGGACTTCCTGCCACCCAAGAAGATGAAGGATC < 41bp 1 0.39252243420242 1 0.0988755226135254 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051175 chr19:13051188 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_13360 0 0 1 0 1 CALR chr19:13051266 5'GT 13051266 Upstream 79bp
chr19 13051212 13051212 1 + G A rs200486676 13051210 + 13051190 13051230 41 AGGATCCTGATGCTTCAAAACCGGAAGACTGGGATGAGCGG AGGATCCTGATGCTTCAAAACCAGAAGACTGGGATGAGCGG < 41bp 1 0.618179290643952 1 0.256723165512085 experiment 0.763641418712095 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051210 chr19:13051212 synonymous SNV . 0 23 hm5C_associated_SNPs_13361 0 0 1 0 1 CALR chr19:13051266 5'GT 13051266 Upstream 55bp
chr19 13054401 13054401 1 + A G rs140610430 13054404 + 13054384 13054424 41 ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA ATCACCAACGATGAGGCGTACGCTGAGGAGTTTGGCAACGA < 41bp 1 0.507028281735713 1 0.113809049129486 experiment 0.985943436528575 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054404 chr19:13054401 synonymous SNV . 0 18 hm5C_associated_SNPs_13362 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 51bp
chr19 13054401 13054401 1 + A G rs140610430 13054404 + 13054384 13054424 41 ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA ATCACCAACGATGAGGCGTACGCTGAGGAGTTTGGCAACGA < 41bp 1 0.507028281735713 1 0.113809049129486 experiment 0.985943436528575 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054404 chr19:13054401 synonymous SNV . 0 18 hm5C_associated_SNPs_13362 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 43bp
chr19 13054401 13054401 1 + A G rs140610430 13054406 + 13054386 13054426 41 CACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGAGA CACCAACGATGAGGCGTACGCTGAGGAGTTTGGCAACGAGA < 41bp 1 0.728864074733387 1 0.225777447223663 experiment 0.542271850533226 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054406 chr19:13054401 synonymous SNV . 0 16 hm5C_associated_SNPs_13363 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 51bp
chr19 13054401 13054401 1 + A G rs140610430 13054406 + 13054386 13054426 41 CACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGAGA CACCAACGATGAGGCGTACGCTGAGGAGTTTGGCAACGAGA < 41bp 1 0.728864074733387 1 0.225777447223663 experiment 0.542271850533226 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054406 chr19:13054401 synonymous SNV . 0 16 hm5C_associated_SNPs_13363 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 43bp
chr19 13054401 13054401 1 + A G rs140610430 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCGTACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC < 41bp 1 0.634340048632636 1 0.765494525432587 experiment 0.731319902734728 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054401 synonymous SNV . 0 3 hm5C_associated_SNPs_13364 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 51bp
chr19 13054401 13054401 1 + A G rs140610430 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCGTACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC < 41bp 1 0.634340048632636 1 0.765494525432587 experiment 0.731319902734728 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054401 synonymous SNV . 0 3 hm5C_associated_SNPs_13364 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 43bp
chr19 13054615 13054615 1 + A C rs143880510 13054601 + 13054581 13054621 41 GAGGAAGAAGACAAGAAACGCAAAGAGGAGGAGGAGGCAGA GAGGAAGAAGACAAGAAACGCAAAGAGGAGGAGGCGGCAGA < 41bp 1 0.599484554834281 1 0.574181497097015 experiment 0.801030890331439 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALR ENSG00000179218 CDS Human protein_coding chr19:13054601 chr19:13054615 nonsynonymous SNV 0.975 1 35 hm5C_associated_SNPs_13365 0 0 1 0 1 CALR chr19:13054527 3'AG 13054527 Downstream 89bp
chr19 13843084 13843084 1 + A G rs147584625 13843079 + 13843059 13843099 41 AGAGGCCCACCCTGGAGTAACCCTCACTGGAGAATCCAGAG AGAGGCCCACCCTGGAGTAACCCTCGCTGGAGAATCCAGAG < 41bp 1 0.0618235393757055 1 0.138804525136948 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC130 ENSG00000104957 UTR5 Human protein_coding chr19:13843079 chr19:13843084 . . 0 26 hm5C_associated_SNPs_13369 0 0 1 0 2 CCDC130 chr19:13842989 3'AG 13842989 Downstream 96bp
chr19 13843084 13843084 1 + A G rs147584625 13843079 + 13843059 13843099 41 AGAGGCCCACCCTGGAGTAACCCTCACTGGAGAATCCAGAG AGAGGCCCACCCTGGAGTAACCCTCGCTGGAGAATCCAGAG < 41bp 1 0.0618235393757055 1 0.138804525136948 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC130 ENSG00000104957 UTR5 Human protein_coding chr19:13843079 chr19:13843084 . . 0 26 hm5C_associated_SNPs_13369 0 0 1 0 2 CCDC130 chr19:13843099 5'GT 13843099 Upstream 16bp
chr19 13906541 13906541 1 + C G rs534850044 13906530 + 13906510 13906550 41 CGAGGAGCGCGATGCCGGGGCCGGGGCCGCGCGTGGCCGGG CGAGGAGCGCGATGCCGGGGCCGGGGCCGCGGGTGGCCGGG < 41bp 1 0.779527960830019 1 0.8914754986763 experiment 0.440944078339962 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13906530 chr19:13906541 nonsynonymous SNV 0.545 0 32 hm5C_associated_SNPs_13392 0 0 0 0 1 ZSWIM4 chr19:13906615 5'GT 13906615 Upstream 75bp
chr19 13906541 13906541 1 + C G rs534850044 13906536 + 13906516 13906556 41 GCGCGATGCCGGGGCCGGGGCCGCGCGTGGCCGGGGCCGGC GCGCGATGCCGGGGCCGGGGCCGCGGGTGGCCGGGGCCGGC < 41bp 1 0.751591645148093 1 0.627757012844086 experiment 0.496816709703814 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13906536 chr19:13906541 nonsynonymous SNV 0.545 0 26 hm5C_associated_SNPs_13393 0 0 0 0 1 ZSWIM4 chr19:13906615 5'GT 13906615 Upstream 75bp
chr19 14030642 14030642 1 + A G rs191830054 14030636 + 14030616 14030656 41 CGACTGGCCACCCAGGCTTCCCCCCAATCCAGGGCCTGGAG CGACTGGCCACCCAGGCTTCCCCCCAGTCCAGGGCCTGGAG < 41bp 1 0.0646634996910628 1 0.0391837656497955 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14030636 chr19:14030642 nonsynonymous SNV 0.973 2 27 hm5C_associated_SNPs_13394 2 0 1 0 1 CC2D1A chr19:14030631 3'AG 14030631 Downstream 12bp
chr19 14037648 14037648 1 + A G rs73925404 14037657 + 14037637 14037677 41 GAAGCTCAGAAAGACAAGACCAGTGTGATCAAGAACACAGA GAAGCTCAGAAGGACAAGACCAGTGTGATCAAGAACACAGA < 41bp 1 0.297525917096853 1 0.122420847415924 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14037657 chr19:14037648 synonymous SNV . 0 12 hm5C_associated_SNPs_13395 1 0 0 0 2 CC2D1A chr19:14037634 3'AG 14037634 Downstream 15bp
chr19 14037648 14037648 1 + A G rs73925404 14037657 + 14037637 14037677 41 GAAGCTCAGAAAGACAAGACCAGTGTGATCAAGAACACAGA GAAGCTCAGAAGGACAAGACCAGTGTGATCAAGAACACAGA < 41bp 1 0.297525917096853 1 0.122420847415924 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14037657 chr19:14037648 synonymous SNV . 0 12 hm5C_associated_SNPs_13395 1 0 0 0 2 CC2D1A chr19:14037685 5'GT 14037685 Upstream 38bp
chr19 14561832 14561832 1 + C T rs140044731 14561839 + 14561819 14561859 41 GAAGAGCTCGCTGCGGCCTCCTCCGCTGCCTTCAGCACCCG GAAGAGCTCGCTGTGGCCTCCTCCGCTGCCTTCAGCACCCG < 41bp 1 0.626145650072662 1 0.507423162460327 experiment 0.747708699854675 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14561839 chr19:14561832 nonsynonymous SNV 0.100 0 14 hm5C_associated_SNPs_13397 0 0 1 0 1 PKN1 chr19:14561921 5'GT 14561921 Upstream 90bp
chr19 14574937 14574937 1 + G A rs114585039 14574942 + 14574922 14574962 41 CTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCCCATCGAGC CTCAGAAGAGCTCGCAGGATCCTCCTTCCAGCCCATCGAGC < 41bp 1 0.0557226432196962 1 0.0954462289810181 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574942 chr19:14574937 nonsynonymous SNV 0.000 0 16 hm5C_associated_SNPs_13398 0 0 1 0 2 PKN1 chr19:14574872 3'AG 14574872 Downstream 66bp
chr19 14574937 14574937 1 + G A rs114585039 14574942 + 14574922 14574962 41 CTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCCCATCGAGC CTCAGAAGAGCTCGCAGGATCCTCCTTCCAGCCCATCGAGC < 41bp 1 0.0557226432196962 1 0.0954462289810181 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574942 chr19:14574937 nonsynonymous SNV 0.000 0 16 hm5C_associated_SNPs_13398 0 0 1 0 2 PKN1 chr19:14574965 5'GT 14574965 Upstream 29bp
chr19 14574959 14574959 1 + G A rs2230538 14574942 + 14574922 14574962 41 CTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCCCATCGAGC CTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCCCATCAAGC < 41bp 1 0.0574909384884429 1 0.215134829282761 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574942 chr19:14574959 synonymous SNV . 0 38 hm5C_associated_SNPs_13399 0 0 1 0 2 PKN1 chr19:14574872 3'AG 14574872 Downstream 88bp
chr19 14574959 14574959 1 + G A rs2230538 14574942 + 14574922 14574962 41 CTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCCCATCGAGC CTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCCCATCAAGC < 41bp 1 0.0574909384884429 1 0.215134829282761 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574942 chr19:14574959 synonymous SNV . 0 38 hm5C_associated_SNPs_13399 0 0 1 0 2 PKN1 chr19:14574965 5'GT 14574965 Upstream 7bp
chr19 14580192 14580192 1 + T C rs199587903 14580202 + 14580182 14580222 41 CAGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTC CAGTGACCAGCGCGGGACACCCCTTCCTGGTGAACCTCTTC < 41bp 1 0.0450302523406401 1 0.164615422487259 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580202 chr19:14580192 synonymous SNV . 0 11 hm5C_associated_SNPs_13400 0 0 1 0 1 PKN1 chr19:14580153 3'AG 14580153 Downstream 40bp
chr19 14580192 14580192 1 + T C rs199587903 14580203 + 14580183 14580223 41 AGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCG AGTGACCAGCGCGGGACACCCCTTCCTGGTGAACCTCTTCG < 41bp 1 0.0203901231431754 1 0.124209403991699 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580203 chr19:14580192 synonymous SNV . 0 10 hm5C_associated_SNPs_13401 0 0 1 0 1 PKN1 chr19:14580153 3'AG 14580153 Downstream 40bp
chr19 14580192 14580192 1 + T C rs199587903 14580207 + 14580187 14580227 41 ACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCGGCTG ACCAGCGCGGGACACCCCTTCCTGGTGAACCTCTTCGGCTG < 41bp 1 0.425040032005589 1 0.706047594547272 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580207 chr19:14580192 synonymous SNV . 0 6 hm5C_associated_SNPs_13402 0 0 1 0 1 PKN1 chr19:14580153 3'AG 14580153 Downstream 40bp
chr19 14580195 14580195 1 + G A rs114340231 14580202 + 14580182 14580222 41 CAGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTC CAGTGACCAGTGCAGGACACCCCTTCCTGGTGAACCTCTTC < 41bp 1 0.0363896029276637 1 0.060499519109726 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580202 chr19:14580195 synonymous SNV . 0 14 hm5C_associated_SNPs_13403 0 0 1 0 1 PKN1 chr19:14580153 3'AG 14580153 Downstream 43bp
chr19 14580195 14580195 1 + G A rs114340231 14580203 + 14580183 14580223 41 AGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCG AGTGACCAGTGCAGGACACCCCTTCCTGGTGAACCTCTTCG < 41bp 1 0.0151917647410549 1 0.035011500120163 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580203 chr19:14580195 synonymous SNV . 0 13 hm5C_associated_SNPs_13404 0 0 1 0 1 PKN1 chr19:14580153 3'AG 14580153 Downstream 43bp
chr19 14580195 14580195 1 + G A rs114340231 14580207 + 14580187 14580227 41 ACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCGGCTG ACCAGTGCAGGACACCCCTTCCTGGTGAACCTCTTCGGCTG < 41bp 1 0.372395092556646 1 0.615377068519592 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580207 chr19:14580195 synonymous SNV . 0 9 hm5C_associated_SNPs_13405 0 0 1 0 1 PKN1 chr19:14580153 3'AG 14580153 Downstream 43bp
chr19 14675889 14675889 1 + C T rs59273619 14675880 + 14675860 14675900 41 ATCCTGCTTCTCTGACAGATCTGCCAGCTCGGCAACTTCTC ATCCTGCTTCTCTGACAGATCTGCCAGCTTGGCAACTTCTC < 41bp 1 0.489369834854654 1 0.265589833259583 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TECR ENSG00000099797 CDS Human protein_coding chr19:14675880 chr19:14675889 synonymous SNV . 0 30 hm5C_associated_SNPs_13406 1 0 1 0 2 TECR chr19:14675878 3'AG 14675878 Downstream 12bp
chr19 14675889 14675889 1 + C T rs59273619 14675880 + 14675860 14675900 41 ATCCTGCTTCTCTGACAGATCTGCCAGCTCGGCAACTTCTC ATCCTGCTTCTCTGACAGATCTGCCAGCTTGGCAACTTCTC < 41bp 1 0.489369834854654 1 0.265589833259583 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TECR ENSG00000099797 CDS Human protein_coding chr19:14675880 chr19:14675889 synonymous SNV . 0 30 hm5C_associated_SNPs_13406 1 0 1 0 2 TECR chr19:14675935 5'GT 14675935 Upstream 47bp
chr19 15222231 15222231 1 + C T rs145641624 15222222 + 15222202 15222242 41 GCGGTCTGCCTATCTGAGGACCTGTACCCCGATATCAATGT GCGGTCTGCCTATCTGAGGACCTGTACCCTGATATCAATGT < 41bp 1 0.0445485099432676 1 0.0364526808261871 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15222222 chr19:15222231 synonymous SNV . 0 30 hm5C_associated_SNPs_13408 0 0 0 0 1 SYDE1 chr19:15222250 5'GT 15222250 Upstream 20bp
chr19 16314386 16314386 1 + G A rs141457321 16314393 + 16314373 16314413 41 TCCTGGCCCACGGGGGGGTCCGTTTCATGTGGATCAAACAC TCCTGGCCCACGGAGGGGTCCGTTTCATGTGGATCAAACAC < 41bp 1 0.0723848416900828 1 0.0837595760822296 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16314393 chr19:16314386 synonymous SNV . 0 14 hm5C_associated_SNPs_13411 0 0 1 0 1 AP1M1 chr19:16314426 5'GT 16314426 Upstream 41bp
chr19 16962292 16962292 1 + A G rs61754499 16962301 + 16962281 16962321 41 CCCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCGCTCCTC CCCCGGAGCACGGCAGGAAGCGCTCCCGGCCCTCGCTCCTC < 41bp 1 0.373568580669639 1 0.383658438920975 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIN3B ENSG00000127511 CDS Human protein_coding chr19:16962301 chr19:16962292 nonsynonymous SNV 0.601 0 12 hm5C_associated_SNPs_13415 0 0 0 0 2 SIN3B chr19:16962223 3'AG 16962223 Downstream 70bp
chr19 16962292 16962292 1 + A G rs61754499 16962301 + 16962281 16962321 41 CCCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCGCTCCTC CCCCGGAGCACGGCAGGAAGCGCTCCCGGCCCTCGCTCCTC < 41bp 1 0.373568580669639 1 0.383658438920975 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIN3B ENSG00000127511 CDS Human protein_coding chr19:16962301 chr19:16962292 nonsynonymous SNV 0.601 0 12 hm5C_associated_SNPs_13415 0 0 0 0 2 SIN3B chr19:16962345 5'GT 16962345 Upstream 54bp
chr19 17316782 17316782 1 + T C rs7248508 17316775 + 17316755 17316795 41 CCCCGGCACTGCAGGGCGAGCCAGGCGTTGAGCCTGGCCAC CCCCGGCACTGCAGGGCGAGCCAGGCGCTGAGCCTGGCCAC < 41bp 1 0.246848123740964 1 0.623004972934723 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17316775 chr19:17316782 nonsynonymous SNV 0.005 1 28 hm5C_associated_SNPs_13418 0 0 1 0 1 MYO9B chr19:17316769 3'AG 17316769 Downstream 14bp
chr19 17322800 17322800 1 + T C rs117297085 17322803 + 17322783 17322823 41 AAGGCCGTCGTCCTTCGTAACGGTCAGAGTGAAGACCCCCC AAGGCCGTCGTCCTTCGCAACGGTCAGAGTGAAGACCCCCC < 41bp 1 0.141119099570083 1 0.196796476840973 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17322803 chr19:17322800 nonsynonymous SNV 0.924 1 18 hm5C_associated_SNPs_13419 0 0 1 0 1 MYO9B chr19:17322704 3'AG 17322704 Downstream 97bp
chr19 17337656 17337656 1 + A C rs200411700 17337675 + 17337655 17337695 41 CACCCGCCTGGGCCTGGGCCCCCGGTGAGCCTGACCGGGAG CCCCCGCCTGGGCCTGGGCCCCCGGTGAGCCTGACCGGGAG < 41bp 1 0.733805235791114 1 0.555348217487335 experiment 0.532389528417772 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OCEL1 ENSG00000099330 CDS Human protein_coding chr19:17337675 chr19:17337656 nonsynonymous SNV 0.057 1 2 hm5C_associated_SNPs_13421 0 0 1 0 1 OCEL1 chr19:17337678 5'GT 17337678 Upstream 23bp
chr19 17337659 17337659 1 + C A rs200297320 17337675 + 17337655 17337695 41 CACCCGCCTGGGCCTGGGCCCCCGGTGAGCCTGACCGGGAG CACCAGCCTGGGCCTGGGCCCCCGGTGAGCCTGACCGGGAG < 41bp 1 0.708044130782964 1 0.525772511959076 experiment 0.583911738434073 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OCEL1 ENSG00000099330 CDS Human protein_coding chr19:17337675 chr19:17337659 nonsynonymous SNV 0.201 2 5 hm5C_associated_SNPs_13422 0 0 1 0 1 OCEL1 chr19:17337678 5'GT 17337678 Upstream 20bp
chr19 17337663 17337663 1 + T A rs199721272 17337675 + 17337655 17337695 41 CACCCGCCTGGGCCTGGGCCCCCGGTGAGCCTGACCGGGAG CACCCGCCAGGGCCTGGGCCCCCGGTGAGCCTGACCGGGAG < 41bp 1 0.687882326091135 1 0.510318875312805 experiment 0.624235347817731 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OCEL1 ENSG00000099330 CDS Human protein_coding chr19:17337675 chr19:17337663 synonymous SNV . 0 9 hm5C_associated_SNPs_13423 0 0 1 0 1 OCEL1 chr19:17337678 5'GT 17337678 Upstream 16bp
chr19 17392890 17392890 1 + C A rs369002862 17392879 + 17392859 17392899 41 TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCGCGGAC TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGAGGCGCGGAC < 41bp 1 0.556876474237768 1 0.186009407043457 experiment 0.886247051524464 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17392879 chr19:17392890 stopgain 0.251 0 32 hm5C_associated_SNPs_13424 0 0 1 0 2 ANKLE1 chr19:17392866 3'AG 17392866 Downstream 25bp
chr19 17392890 17392890 1 + C A rs369002862 17392879 + 17392859 17392899 41 TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCGCGGAC TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGAGGCGCGGAC < 41bp 1 0.556876474237768 1 0.186009407043457 experiment 0.886247051524464 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANKLE1 ENSG00000160117 CDS Human other chr19:17392879 chr19:17392890 stopgain 0.251 0 32 hm5C_associated_SNPs_13424 0 0 1 0 2 ANKLE1 chr19:17392871 3'AG 17392871 Downstream 20bp
chr19 17392894 17392894 1 + G A rs8100241 17392879 + 17392859 17392899 41 TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCGCGGAC TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCACGGAC < 41bp 1 0.532148644454254 1 0.240589946508408 experiment 0.935702711091491 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17392879 chr19:17392894 nonsynonymous SNV 0.145 3 36 hm5C_associated_SNPs_13425 0 1 1 6 2 ANKLE1 chr19:17392866 3'AG 17392866 Downstream 29bp
chr19 17392894 17392894 1 + G A rs8100241 17392879 + 17392859 17392899 41 TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCGCGGAC TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCACGGAC < 41bp 1 0.532148644454254 1 0.240589946508408 experiment 0.935702711091491 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANKLE1 ENSG00000160117 CDS Human other chr19:17392879 chr19:17392894 nonsynonymous SNV 0.145 3 36 hm5C_associated_SNPs_13425 0 1 1 6 2 ANKLE1 chr19:17392871 3'AG 17392871 Downstream 24bp
chr19 17424897 17424897 1 + C A rs185043934 17424890 + 17424870 17424910 41 CAATTTTAGTCGATTTCACGCGGACTCCGTGTGCAAAGCCT CAATTTTAGTCGATTTCACGCGGACTCAGTGTGCAAAGCCT < 41bp 1 0.195088201753637 1 0.144187688827515 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDA1 ENSG00000130311 CDS Human protein_coding chr19:17424890 chr19:17424897 synonymous SNV . 0 28 hm5C_associated_SNPs_13426 0 0 1 0 2 DDA1 chr19:17424832 3'AG 17424832 Downstream 66bp
chr19 17424897 17424897 1 + C A rs185043934 17424890 + 17424870 17424910 41 CAATTTTAGTCGATTTCACGCGGACTCCGTGTGCAAAGCCT CAATTTTAGTCGATTTCACGCGGACTCAGTGTGCAAAGCCT < 41bp 1 0.195088201753637 1 0.144187688827515 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDA1 ENSG00000130311 CDS Human protein_coding chr19:17424890 chr19:17424897 synonymous SNV . 0 28 hm5C_associated_SNPs_13426 0 0 1 0 2 DDA1 chr19:17424912 5'GT 17424912 Upstream 16bp
chr19 17688793 17688793 1 + G A rs13346446 17688792 + 17688772 17688812 41 GAACACCAGCCAGGTGGAGGCGCTGGGGATCCAGATGCTGC GAACACCAGCCAGGTGGAGGCACTGGGGATCCAGATGCTGC < 41bp 1 0.514045239745763 1 0.443356543779373 experiment 0.971909520508474 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COLGALT1 ENSG00000130309 CDS Human protein_coding chr19:17688792 chr19:17688793 synonymous SNV . 0 22 hm5C_associated_SNPs_13428 0 0 1 0 1 COLGALT1 chr19:17688766 3'AG 17688766 Downstream 28bp
chr19 17973752 17973752 1 + C A rs148256083 17973750 + 17973730 17973770 41 GAGACATGGGTGCCCGGCACCGCGCCCGAGCCCACTCCATT GAGACATGGGTGCCCGGCACCGAGCCCGAGCCCACTCCATT < 41bp 1 0.524231102584258 1 0.716185092926025 experiment 0.951537794831485 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL18A ENSG00000105640 CDS Human protein_coding chr19:17973750 chr19:17973752 synonymous SNV . 0 23 hm5C_associated_SNPs_13457 0 0 1 0 2 RPL18A chr19:17973727 3'AG 17973727 Downstream 26bp
chr19 17973752 17973752 1 + C A rs148256083 17973750 + 17973730 17973770 41 GAGACATGGGTGCCCGGCACCGCGCCCGAGCCCACTCCATT GAGACATGGGTGCCCGGCACCGAGCCCGAGCCCACTCCATT < 41bp 1 0.524231102584258 1 0.716185092926025 experiment 0.951537794831485 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL18A ENSG00000105640 CDS Human protein_coding chr19:17973750 chr19:17973752 synonymous SNV . 0 23 hm5C_associated_SNPs_13457 0 0 1 0 2 RPL18A chr19:17973836 5'GT 17973836 Upstream 85bp
chr19 17973755 17973755 1 + C T rs374587280 17973750 + 17973730 17973770 41 GAGACATGGGTGCCCGGCACCGCGCCCGAGCCCACTCCATT GAGACATGGGTGCCCGGCACCGCGCTCGAGCCCACTCCATT < 41bp 1 0.657556104113132 1 0.471222758293152 experiment 0.684887791773735 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL18A ENSG00000105640 CDS Human protein_coding chr19:17973750 chr19:17973755 synonymous SNV . 0 26 hm5C_associated_SNPs_13458 0 0 1 0 2 RPL18A chr19:17973727 3'AG 17973727 Downstream 29bp
chr19 17973755 17973755 1 + C T rs374587280 17973750 + 17973730 17973770 41 GAGACATGGGTGCCCGGCACCGCGCCCGAGCCCACTCCATT GAGACATGGGTGCCCGGCACCGCGCTCGAGCCCACTCCATT < 41bp 1 0.657556104113132 1 0.471222758293152 experiment 0.684887791773735 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL18A ENSG00000105640 CDS Human protein_coding chr19:17973750 chr19:17973755 synonymous SNV . 0 26 hm5C_associated_SNPs_13458 0 0 1 0 2 RPL18A chr19:17973836 5'GT 17973836 Upstream 82bp
chr19 18045988 18045988 1 + G A rs77851722 18045996 + 18045976 18046016 41 CTCCCAAAGCACGGGGATTACAAACGTGAGTGATCGCACCC CTCCCAAAGCACAGGGATTACAAACGTGAGTGATCGCACCC < 41bp 1 0.465838009177513 1 0.326624512672424 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC124 ENSG00000007080 UTR5 Human protein_coding chr19:18045996 chr19:18045988 . . 0 13 hm5C_associated_SNPs_13459 0 0 1 0 1 CCDC124 chr19:18046000 5'GT 18046000 Upstream 13bp
chr19 18045988 18045988 1 + G A rs77851722 18046000 + 18045980 18046020 41 CAAAGCACGGGGATTACAAACGTGAGTGATCGCACCCGGCC CAAAGCACAGGGATTACAAACGTGAGTGATCGCACCCGGCC < 41bp 1 0.639270252028412 1 0.51215672492981 experiment 0.721459495943176 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC124 ENSG00000007080 UTR5 Human protein_coding chr19:18046000 chr19:18045988 . . 0 9 hm5C_associated_SNPs_13460 0 0 1 0 1 CCDC124 chr19:18046000 5'GT 18046000 Upstream 13bp
chr19 18046000 18046000 1 + C T rs548714784 18045996 + 18045976 18046016 41 CTCCCAAAGCACGGGGATTACAAACGTGAGTGATCGCACCC CTCCCAAAGCACGGGGATTACAAATGTGAGTGATCGCACCC < 41bp 1 0.567304485811143 1 0.411503583192825 experiment 0.865391028377713 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC124 ENSG00000007080 UTR5 Human protein_coding chr19:18045996 chr19:18046000 . . 0 25 hm5C_associated_SNPs_13461 0 0 1 0 1 CCDC124 chr19:18046000 5'GT 18046000 Upstream 1bp
chr19 18053557 18053557 1 + C G rs4808106 18053574 + 18053554 18053594 41 CGGCAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCC CGGGAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCC < 41bp 1 0.383126241619547 1 0.0548942089080811 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18053574 chr19:18053557 synonymous SNV . 0 4 hm5C_associated_SNPs_13462 0 0 1 0 2 CCDC124 chr19:18053465 3'AG 18053465 Downstream 93bp
chr19 18053557 18053557 1 + C G rs4808106 18053574 + 18053554 18053594 41 CGGCAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCC CGGGAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCC < 41bp 1 0.383126241619547 1 0.0548942089080811 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18053574 chr19:18053557 synonymous SNV . 0 4 hm5C_associated_SNPs_13462 0 0 1 0 2 CCDC124 chr19:18053654 5'GT 18053654 Upstream 98bp
chr19 18053557 18053557 1 + C G rs4808106 18053575 + 18053555 18053595 41 GGCAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCCG GGGAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCCG < 41bp 1 0.738349578165822 1 0.537675797939301 experiment 0.523300843668355 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18053575 chr19:18053557 synonymous SNV . 0 3 hm5C_associated_SNPs_13463 0 0 1 0 2 CCDC124 chr19:18053465 3'AG 18053465 Downstream 93bp
chr19 18053557 18053557 1 + C G rs4808106 18053575 + 18053555 18053595 41 GGCAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCCG GGGAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCCG < 41bp 1 0.738349578165822 1 0.537675797939301 experiment 0.523300843668355 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18053575 chr19:18053557 synonymous SNV . 0 3 hm5C_associated_SNPs_13463 0 0 1 0 2 CCDC124 chr19:18053654 5'GT 18053654 Upstream 98bp
chr19 18255940 18255940 1 + C T rs145623321 18255949 + 18255929 18255969 41 CGGCCCCCCATCGTTATCCACAGCTCTGGCAAGAAGTACGG CGGCCCCCCATTGTTATCCACAGCTCTGGCAAGAAGTACGG < 41bp 1 0.218848354738631 1 0.0382837653160095 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18255949 chr19:18255940 synonymous SNV . 0 12 hm5C_associated_SNPs_13468 0 0 0 0 1 MAST3 chr19:18256039 5'GT 18256039 Upstream 100bp
chr19 18255967 18255967 1 + C G rs73925427 18255949 + 18255929 18255969 41 CGGCCCCCCATCGTTATCCACAGCTCTGGCAAGAAGTACGG CGGCCCCCCATCGTTATCCACAGCTCTGGCAAGAAGTAGGG < 41bp 1 0.223690517149981 1 0.0954457223415375 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18255949 chr19:18255967 stopgain 0.999 1 39 hm5C_associated_SNPs_13469 0 0 0 0 1 MAST3 chr19:18256039 5'GT 18256039 Upstream 73bp
chr19 18285944 18285944 1 + G A rs11554159 18285943 + 18285923 18285963 41 AAGCACTGTGCGGTGGCTGCCGAGCCTTCCTGATCCGGGAG AAGCACTGTGCGGTGGCTGCCAAGCCTTCCTGATCCGGGAG < 41bp 1 0.458218428306944 1 0.902614772319794 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFI30 ENSG00000216490 CDS Human protein_coding chr19:18285943 chr19:18285944 nonsynonymous SNV 0.009 1 22 hm5C_associated_SNPs_13474 0 1 1 0 2 IFI30 chr19:18285850 3'AG 18285850 Downstream 95bp
chr19 18285944 18285944 1 + G A rs11554159 18285943 + 18285923 18285963 41 AAGCACTGTGCGGTGGCTGCCGAGCCTTCCTGATCCGGGAG AAGCACTGTGCGGTGGCTGCCAAGCCTTCCTGATCCGGGAG < 41bp 1 0.458218428306944 1 0.902614772319794 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFI30 ENSG00000216490 CDS Human protein_coding chr19:18285943 chr19:18285944 nonsynonymous SNV 0.009 1 22 hm5C_associated_SNPs_13474 0 1 1 0 2 IFI30 chr19:18286032 5'GT 18286032 Upstream 89bp
chr19 18288069 18288069 1 + A G rs7125 18288068 + 18288048 18288088 41 GACAGATGCTCTCCAGCCACCACACGAGTATGTGCCCTGGG GACAGATGCTCTCCAGCCACCGCACGAGTATGTGCCCTGGG < 41bp 1 0.257020414905169 1 0.447340548038483 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFI30 ENSG00000216490 CDS Human protein_coding chr19:18288068 chr19:18288069 synonymous SNV . 0 22 hm5C_associated_SNPs_13475 0 0 1 0 1 IFI30 chr19:18288102 5'GT 18288102 Upstream 34bp
chr19 18288069 18288069 1 + A G rs7125 18288070 + 18288050 18288090 41 CAGATGCTCTCCAGCCACCACACGAGTATGTGCCCTGGGTC CAGATGCTCTCCAGCCACCGCACGAGTATGTGCCCTGGGTC < 41bp 1 0.770232663848434 1 0.820320010185242 experiment 0.459534672303132 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFI30 ENSG00000216490 CDS Human protein_coding chr19:18288070 chr19:18288069 synonymous SNV . 0 20 hm5C_associated_SNPs_13476 0 0 1 0 1 IFI30 chr19:18288102 5'GT 18288102 Upstream 34bp
chr19 18451435 18451435 1 + A C rs570498910 18451440 + 18451420 18451460 41 AGAGGCTGCAGCGGCAGCAGCTGTCGCGCCAGTCGCAACAG AGAGGCTGCAGCGGCCGCAGCTGTCGCGCCAGTCGCAACAG < 41bp 1 0.377953687086884 1 0.304143071174622 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PGPEP1 ENSG00000130517 UTR5 Human protein_coding chr19:18451440 chr19:18451435 . . 0 16 hm5C_associated_SNPs_13477 0 0 1 0 1 PGPEP1 chr19:18451525 5'GT 18451525 Upstream 91bp
chr19 18451456 18451456 1 + A G rs553180914 18451440 + 18451420 18451460 41 AGAGGCTGCAGCGGCAGCAGCTGTCGCGCCAGTCGCAACAG AGAGGCTGCAGCGGCAGCAGCTGTCGCGCCAGTCGCGACAG < 41bp 1 0.433306551736562 1 0.237459808588028 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PGPEP1 ENSG00000130517 UTR5 Human protein_coding chr19:18451440 chr19:18451456 . . 0 37 hm5C_associated_SNPs_13478 0 0 1 0 1 PGPEP1 chr19:18451525 5'GT 18451525 Upstream 70bp
chr19 18451457 18451457 1 + A G rs2302946 18451440 + 18451420 18451460 41 AGAGGCTGCAGCGGCAGCAGCTGTCGCGCCAGTCGCAACAG AGAGGCTGCAGCGGCAGCAGCTGTCGCGCCAGTCGCAGCAG < 41bp 1 0.40753745468038 1 0.295652031898499 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PGPEP1 ENSG00000130517 UTR5 Human protein_coding chr19:18451440 chr19:18451457 . . 0 38 hm5C_associated_SNPs_13479 0 0 1 0 1 PGPEP1 chr19:18451525 5'GT 18451525 Upstream 69bp
chr19 18542849 18542849 1 + C G rs538123528 18542868 + 18542848 18542888 41 CCTCCTCGTGGCATGGCCAGCGTGGGGCCCCAGGTAAGAGT CGTCCTCGTGGCATGGCCAGCGTGGGGCCCCAGGTAAGAGT < 41bp 1 0.465882227823921 1 0.641592144966125 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18542868 chr19:18542849 nonsynonymous SNV 0.594 2 2 hm5C_associated_SNPs_13482 0 0 1 0 1 SSBP4 chr19:18542810 3'AG 18542810 Downstream 40bp
chr19 18543841 18543841 1 + C T rs138143670 18543840 + 18543820 18543860 41 GAACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTG GAACCCCATCGGGCAGGGCGCTGGCAGGGCTAATGTGAGTG < 41bp 1 0.323105927126823 1 0.243281662464142 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543840 chr19:18543841 synonymous SNV . 0 22 hm5C_associated_SNPs_13483 0 0 1 0 2 SSBP4 chr19:18543783 3'AG 18543783 Downstream 59bp
chr19 18543841 18543841 1 + C T rs138143670 18543840 + 18543820 18543860 41 GAACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTG GAACCCCATCGGGCAGGGCGCTGGCAGGGCTAATGTGAGTG < 41bp 1 0.323105927126823 1 0.243281662464142 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543840 chr19:18543841 synonymous SNV . 0 22 hm5C_associated_SNPs_13483 0 0 1 0 2 SSBP4 chr19:18543853 5'GT 18543853 Upstream 13bp
chr19 18729275 18729275 1 + C A rs150780487 18729284 + 18729264 18729304 41 ACCCTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCCAGGT ACCCTGGTGACAGCGCCTGGCCAGCACCTCAAGTTCCAGGT < 41bp 1 0.201904131242174 1 0.298381209373474 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM59L ENSG00000105696 CDS Human protein_coding chr19:18729284 chr19:18729275 synonymous SNV . 0 12 hm5C_associated_SNPs_13488 0 0 1 0 2 TMEM59L chr19:18729185 3'AG 18729185 Downstream 91bp
chr19 18729275 18729275 1 + C A rs150780487 18729284 + 18729264 18729304 41 ACCCTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCCAGGT ACCCTGGTGACAGCGCCTGGCCAGCACCTCAAGTTCCAGGT < 41bp 1 0.201904131242174 1 0.298381209373474 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM59L ENSG00000105696 CDS Human protein_coding chr19:18729284 chr19:18729275 synonymous SNV . 0 12 hm5C_associated_SNPs_13488 0 0 1 0 2 TMEM59L chr19:18729302 5'GT 18729302 Upstream 28bp
chr19 18856649 18856649 1 + C T rs555463141 18856662 + 18856642 18856682 41 CAATCCTCGGGCCTGGACACCAGCCGGACCACCCGGCACCA CAATCCTTGGGCCTGGACACCAGCCGGACCACCCGGCACCA < 41bp 1 0.382116108810209 1 0.409990787506104 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CRTC1 ENSG00000105662 CDS Human protein_coding chr19:18856662 chr19:18856649 nonsynonymous SNV 0.998 0 8 hm5C_associated_SNPs_13489 0 0 1 0 1 CRTC1 chr19:18856633 3'AG 18856633 Downstream 17bp
chr19 18856649 18856649 1 + C T rs555463141 18856665 + 18856645 18856685 41 TCCTCGGGCCTGGACACCAGCCGGACCACCCGGCACCATGG TCCTTGGGCCTGGACACCAGCCGGACCACCCGGCACCATGG < 41bp 1 0.557817437936877 1 0.527554273605347 experiment 0.884365124126245 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRTC1 ENSG00000105662 CDS Human protein_coding chr19:18856665 chr19:18856649 nonsynonymous SNV 0.998 0 5 hm5C_associated_SNPs_13490 0 0 1 0 1 CRTC1 chr19:18856633 3'AG 18856633 Downstream 17bp
chr19 18967721 18967721 1 + C T rs34677724 18967720 + 18967700 18967740 41 CTGCTGCACATGTGTGGGCGCCGGTGACCCGAGGCTGGCCA CTGCTGCACATGTGTGGGCGCTGGTGACCCGAGGCTGGCCA < 41bp 1 0.4384921910059 1 0.433877825737 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18967720 chr19:18967721 synonymous SNV . 0 22 hm5C_associated_SNPs_13491 0 0 1 0 1 UPF1 chr19:18967686 3'AG 18967686 Downstream 36bp
chr19 18967730 18967730 1 + G A rs146805409 18967720 + 18967700 18967740 41 CTGCTGCACATGTGTGGGCGCCGGTGACCCGAGGCTGGCCA CTGCTGCACATGTGTGGGCGCCGGTGACCCAAGGCTGGCCA < 41bp 1 0.238049086059939 1 0.533830285072327 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18967720 chr19:18967730 synonymous SNV . 0 31 hm5C_associated_SNPs_13492 0 0 1 0 2 UPF1 chr19:18967686 3'AG 18967686 Downstream 45bp
chr19 18967730 18967730 1 + G A rs146805409 18967720 + 18967700 18967740 41 CTGCTGCACATGTGTGGGCGCCGGTGACCCGAGGCTGGCCA CTGCTGCACATGTGTGGGCGCCGGTGACCCAAGGCTGGCCA < 41bp 1 0.238049086059939 1 0.533830285072327 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18967720 chr19:18967730 synonymous SNV . 0 31 hm5C_associated_SNPs_13492 0 0 1 0 2 UPF1 chr19:18967829 5'GT 18967829 Upstream 100bp
chr19 18968335 18968335 1 + C T rs8103462 18968319 + 18968299 18968339 41 CAACATCTTCTACGAGGGCTCCCTCCAGAATGGTGTCACTG CAACATCTTCTACGAGGGCTCCCTCCAGAATGGTGTTACTG < 41bp 1 0.0223612639880214 1 0.037216454744339 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18968319 chr19:18968335 synonymous SNV . 0 37 hm5C_associated_SNPs_13493 0 0 1 0 1 UPF1 chr19:18968342 5'GT 18968342 Upstream 8bp
chr19 19035525 19035525 1 + C A rs140875596 19035531 + 19035511 19035551 41 GAGCAGCCCCCAGTCTCCTGCCAAGGGCACTCCCTCTTTTA GAGCAGCCCCCAGTATCCTGCCAAGGGCACTCCCTCTTTTA < 41bp 1 0.0935120414283053 1 0.335151731967926 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDX49 ENSG00000105671;ENSG00000268193 intronic Human protein_coding chr19:19035531 chr19:19035525 . . 0 15 hm5C_associated_SNPs_13504 0 0 1 0 1 DDX49 chr19:19035432 3'AG 19035432 Downstream 94bp
chr19 19605132 19605132 1 + C T rs146134903 19605126 + 19605106 19605146 41 ACAGGTTCTGTTGGGAGCACCGTGACCACCCCTCCCCCGCT ACAGGTTCTGTTGGGAGCACCGTGACTACCCCTCCCCCGCT < 41bp 1 0.688316971073256 1 0.733365416526794 experiment 0.623366057853488 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19605126 chr19:19605132 synonymous SNV . 0 27 hm5C_associated_SNPs_13510 0 0 1 0 2 GATAD2A chr19:19605103 3'AG 19605103 Downstream 30bp
chr19 19605132 19605132 1 + C T rs146134903 19605126 + 19605106 19605146 41 ACAGGTTCTGTTGGGAGCACCGTGACCACCCCTCCCCCGCT ACAGGTTCTGTTGGGAGCACCGTGACTACCCCTCCCCCGCT < 41bp 1 0.688316971073256 1 0.733365416526794 experiment 0.623366057853488 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19605126 chr19:19605132 synonymous SNV . 0 27 hm5C_associated_SNPs_13510 0 0 1 0 2 GATAD2A chr19:19605192 5'GT 19605192 Upstream 61bp
chr19 19605144 19605144 1 + G A rs200171655 19605126 + 19605106 19605146 41 ACAGGTTCTGTTGGGAGCACCGTGACCACCCCTCCCCCGCT ACAGGTTCTGTTGGGAGCACCGTGACCACCCCTCCCCCACT < 41bp 1 0.588538547976629 1 0.687827050685883 experiment 0.822922904046742 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19605126 chr19:19605144 synonymous SNV . 0 39 hm5C_associated_SNPs_13511 0 0 1 0 2 GATAD2A chr19:19605103 3'AG 19605103 Downstream 42bp
chr19 19605144 19605144 1 + G A rs200171655 19605126 + 19605106 19605146 41 ACAGGTTCTGTTGGGAGCACCGTGACCACCCCTCCCCCGCT ACAGGTTCTGTTGGGAGCACCGTGACCACCCCTCCCCCACT < 41bp 1 0.588538547976629 1 0.687827050685883 experiment 0.822922904046742 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19605126 chr19:19605144 synonymous SNV . 0 39 hm5C_associated_SNPs_13511 0 0 1 0 2 GATAD2A chr19:19605192 5'GT 19605192 Upstream 49bp
chr19 21688570 21688570 1 + A G rs191177521 21688567 + 21688547 21688587 41 ACTCCAGGACCCCCTGGAAGCCTAGAAATGGTGAGAGTGCC ACTCCAGGACCCCCTGGAAGCCTGGAAATGGTGAGAGTGCC < 41bp 1 0.513240499660258 1 0.307794511318207 experiment 0.973519000679484 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF429 ENSG00000197013 UTR5 Human protein_coding chr19:21688567 chr19:21688570 . . 0 24 hm5C_associated_SNPs_13532 0 0 0 0 1 ZNF429 chr19:21688576 5'GT 21688576 Upstream 7bp
chr19 24009893 24009893 1 + G A rs7245809 24009900 + 24009880 24009920 41 CTGCAGCTTTTCCGCGCTACCTGCAGAGGGGTCCATACGGC CTGCAGCTTTTCCACGCTACCTGCAGAGGGGTCCATACGGC < 41bp 1 0.694432751056763 1 0.508376181125641 experiment 0.611134497886475 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPSAP58 ENSG00000267924 ncRNA_exonic Human lincRNA chr19:24009900 chr19:24009893 . . 0 14 hm5C_associated_SNPs_13533 0 0 0 0 1 RPSAP58 chr19:24009872 3'AG 24009872 Downstream 22bp
chr19 24009894 24009894 1 + C T rs7245586 24009900 + 24009880 24009920 41 CTGCAGCTTTTCCGCGCTACCTGCAGAGGGGTCCATACGGC CTGCAGCTTTTCCGTGCTACCTGCAGAGGGGTCCATACGGC < 41bp 1 0.716894234679132 1 0.833029687404633 experiment 0.566211530641735 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPSAP58 ENSG00000267924 ncRNA_exonic Human lincRNA chr19:24009900 chr19:24009894 . . 0 15 hm5C_associated_SNPs_13534 0 0 0 0 1 RPSAP58 chr19:24009872 3'AG 24009872 Downstream 23bp
chr19 28296516 28296516 1 + T C rs4638713 28296528 + 28296508 28296548 41 TCCAGGTCTCGCATCTGGGGCTCGATCTCGTGCAGAGGAGC TCCAGGTCCCGCATCTGGGGCTCGATCTCGTGCAGAGGAGC < 41bp 1 0.438649886785634 1 0.558993458747864 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LOC101927151 ENSG00000267323;ENSG00000267575 ncRNA_exonic Human other chr19:28296528 chr19:28296516 . . 0 9 hm5C_associated_SNPs_13540 0 0 0 0 1 LOC101927151 chr19:28296513 3'AG 28296513 Downstream 4bp
chr19 28296522 28296522 1 + C G rs527376449 28296528 + 28296508 28296548 41 TCCAGGTCTCGCATCTGGGGCTCGATCTCGTGCAGAGGAGC TCCAGGTCTCGCATGTGGGGCTCGATCTCGTGCAGAGGAGC < 41bp 1 0.437062834468759 1 0.489818572998047 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LOC101927151 ENSG00000267323;ENSG00000267575 ncRNA_exonic Human other chr19:28296528 chr19:28296522 . . 0 15 hm5C_associated_SNPs_13541 0 0 0 0 1 LOC101927151 chr19:28296513 3'AG 28296513 Downstream 10bp
chr19 28296537 28296537 1 + G C rs149208046 28296528 + 28296508 28296548 41 TCCAGGTCTCGCATCTGGGGCTCGATCTCGTGCAGAGGAGC TCCAGGTCTCGCATCTGGGGCTCGATCTCCTGCAGAGGAGC < 41bp 1 0.439626366237074 1 0.604474723339081 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LOC101927151 ENSG00000267323;ENSG00000267575 ncRNA_exonic Human other chr19:28296528 chr19:28296537 . . 0 30 hm5C_associated_SNPs_13542 0 0 1 0 1 LOC101927151 chr19:28296513 3'AG 28296513 Downstream 25bp
chr19 32973077 32973077 1 + C T rs7253039 32973083 + 32973063 32973103 41 AACCTGCCTCCCTACGTGGCCTACTTCACCAGAGTGTTCCA AACCTGCCTCCCTATGTGGCCTACTTCACCAGAGTGTTCCA < 41bp 1 0.199028989206463 1 0.0518320798873901 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DPY19L3 ENSG00000178904 CDS Human protein_coding chr19:32973083 chr19:32973077 synonymous SNV . 0 15 hm5C_associated_SNPs_13556 0 0 1 0 1 DPY19L3 chr19:32972985 3'AG 32972985 Downstream 93bp
chr19 33202721 33202721 1 + C G rs202188892 33202731 + 33202711 33202751 41 GAAAAAAAGACTGAGGAAATCATGAAGGAAGGCAAGCAGTT GAAAAAAAGAGTGAGGAAATCATGAAGGAAGGCAAGCAGTT < 41bp 1 0.616120394844534 1 0.352740168571472 experiment 0.767759210310933 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NUDT19 ENSG00000213965 CDS Human protein_coding chr19:33202731 chr19:33202721 nonsynonymous SNV 0.975 0 11 hm5C_associated_SNPs_13557 0 0 1 0 1 NUDT19 chr19:33202658 3'AG 33202658 Downstream 64bp
chr19 33465006 33465006 1 + G A rs78628256 33465022 + 33465002 33465042 41 ACCCGGATGAGTGAACAATACTTCCCAGCCCTACAGAAGTT ACCCAGATGAGTGAACAATACTTCCCAGCCCTACAGAAGTT < 41bp 1 0.151696249660628 1 0.111209124326706 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33465022 chr19:33465006 nonsynonymous SNV 0.377 0 5 hm5C_associated_SNPs_13562 0 0 1 0 1 FAAP24 chr19:33464966 3'AG 33464966 Downstream 41bp
chr19 33465034 33465034 1 + A G rs146829849 33465022 + 33465002 33465042 41 ACCCGGATGAGTGAACAATACTTCCCAGCCCTACAGAAGTT ACCCGGATGAGTGAACAATACTTCCCAGCCCTGCAGAAGTT < 41bp 1 0.168217427881005 1 0.181355088949203 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33465022 chr19:33465034 synonymous SNV . 0 33 hm5C_associated_SNPs_13563 0 0 1 0 2 FAAP24 chr19:33464966 3'AG 33464966 Downstream 69bp
chr19 33465034 33465034 1 + A G rs146829849 33465022 + 33465002 33465042 41 ACCCGGATGAGTGAACAATACTTCCCAGCCCTACAGAAGTT ACCCGGATGAGTGAACAATACTTCCCAGCCCTGCAGAAGTT < 41bp 1 0.168217427881005 1 0.181355088949203 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33465022 chr19:33465034 synonymous SNV . 0 33 hm5C_associated_SNPs_13563 0 0 1 0 2 FAAP24 chr19:33465118 5'GT 33465118 Upstream 85bp
chr19 33586715 33586715 1 + G A rs147628604 33586722 + 33586702 33586742 41 CCCTGGAAGCTCGGAAGGATCTGAGGTATTGCATGGTGTGA CCCTGGAAGCTCGAAAGGATCTGAGGTATTGCATGGTGTGA < 41bp 1 0.747553941922667 1 0.102194100618362 experiment 0.504892116154666 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33586722 chr19:33586715 nonsynonymous SNV 0.991 2 14 hm5C_associated_SNPs_13565 0 0 1 0 2 GPATCH1 chr19:33586668 3'AG 33586668 Downstream 48bp
chr19 33586715 33586715 1 + G A rs147628604 33586722 + 33586702 33586742 41 CCCTGGAAGCTCGGAAGGATCTGAGGTATTGCATGGTGTGA CCCTGGAAGCTCGAAAGGATCTGAGGTATTGCATGGTGTGA < 41bp 1 0.747553941922667 1 0.102194100618362 experiment 0.504892116154666 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33586722 chr19:33586715 nonsynonymous SNV 0.991 2 14 hm5C_associated_SNPs_13565 0 0 1 0 2 GPATCH1 chr19:33586726 5'GT 33586726 Upstream 12bp
chr19 34868642 34868642 1 + A G rs1801015 34868643 + 34868623 34868663 41 GCTATGTCTCCCCGCAGGGACCCCTCATGGTGACTGAAGCC GCTATGTCTCCCCGCAGGGGCCCCTCATGGTGACTGAAGCC < 41bp 1 0.0692805902265842 1 0.0913734138011932 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868643 chr19:34868642 synonymous SNV . 0 20 hm5C_associated_SNPs_13575 1 0 1 0 1 GPI chr19:34868640 3'AG 34868640 Downstream 3bp
chr19 34868642 34868642 1 + A G rs1801015 34868644 + 34868624 34868664 41 CTATGTCTCCCCGCAGGGACCCCTCATGGTGACTGAAGCCC CTATGTCTCCCCGCAGGGGCCCCTCATGGTGACTGAAGCCC < 41bp 1 0.0341949408758276 1 0.0517958700656891 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868644 chr19:34868642 synonymous SNV . 0 19 hm5C_associated_SNPs_13576 1 0 1 0 1 GPI chr19:34868640 3'AG 34868640 Downstream 3bp
chr19 34868642 34868642 1 + A G rs1801015 34868645 + 34868625 34868665 41 TATGTCTCCCCGCAGGGACCCCTCATGGTGACTGAAGCCCT TATGTCTCCCCGCAGGGGCCCCTCATGGTGACTGAAGCCCT < 41bp 1 0.105440405164696 1 0.181873351335526 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868645 chr19:34868642 synonymous SNV . 0 18 hm5C_associated_SNPs_13577 1 0 1 0 1 GPI chr19:34868640 3'AG 34868640 Downstream 3bp
chr19 34868776 34868776 1 + T C rs8191371 34868761 + 34868741 34868781 41 GGCCCAGCTGAACCCCGAGTCCTCCCTGTTCATCATTGCCT GGCCCAGCTGAACCCCGAGTCCTCCCTGTTCATCACTGCCT < 41bp 1 0.0396543806095054 1 0.040453314781189 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868761 chr19:34868776 nonsynonymous SNV 0.519 5 36 hm5C_associated_SNPs_13578 1 0 1 0 1 GPI chr19:34868786 5'GT 34868786 Upstream 11bp
chr19 34954979 34954979 1 + G A rs373551149 34954995 + 34954975 34955015 41 AGCCGGCTTCAAGCAGATGACTTCCTCCAGGACTATACTTT AGCCAGCTTCAAGCAGATGACTTCCTCCAGGACTATACTTT < 41bp 1 0.146372299939911 1 0.0165172815322876 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control UBA2 ENSG00000126261 CDS Human protein_coding chr19:34954995 chr19:34954979 nonsynonymous SNV 0.992 0 5 hm5C_associated_SNPs_13605 0 0 1 0 1 UBA2 chr19:34954931 3'AG 34954931 Downstream 49bp
chr19 34959979 34959979 1 + A G rs7259160 34959978 + 34959958 34959998 41 TGACGTTCTCATAGTTGATTCAGATGAAGAAGATTCTTCAA TGACGTTCTCATAGTTGATTCGGATGAAGAAGATTCTTCAA < 41bp 1 0.515941466280125 1 0.226070016622543 experiment 0.968117067439751 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBA2 ENSG00000126261 CDS Human protein_coding chr19:34959978 chr19:34959979 synonymous SNV . 0 22 hm5C_associated_SNPs_13606 0 0 1 0 1 UBA2 chr19:34959945 3'AG 34959945 Downstream 35bp
chr19 34959998 34959998 1 + A C rs78770631 34959978 + 34959958 34959998 41 TGACGTTCTCATAGTTGATTCAGATGAAGAAGATTCTTCAA TGACGTTCTCATAGTTGATTCAGATGAAGAAGATTCTTCAC < 41bp 1 0.474085612452019 1 0.290874063968658 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBA2 ENSG00000126261 CDS Human protein_coding chr19:34959978 chr19:34959998 nonsynonymous SNV 0.957 1 41 hm5C_associated_SNPs_13607 0 0 1 0 1 UBA2 chr19:34959945 3'AG 34959945 Downstream 54bp
chr19 35501051 35501051 1 + T C rs2290642 35501031 + 35501011 35501051 41 TGCAGCGTGAGATCCTGCTCCAGGGCCGCCTCTACCTCTCT TGCAGCGTGAGATCCTGCTCCAGGGCCGCCTCTACCTCTCC < 41bp 1 0.732572101320739 1 0.830146670341492 experiment 0.534855797358522 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35501031 chr19:35501051 synonymous SNV . 0 41 hm5C_associated_SNPs_13610 0 0 1 0 2 GRAMD1A chr19:35500996 3'AG 35500996 Downstream 56bp
chr19 35501051 35501051 1 + T C rs2290642 35501031 + 35501011 35501051 41 TGCAGCGTGAGATCCTGCTCCAGGGCCGCCTCTACCTCTCT TGCAGCGTGAGATCCTGCTCCAGGGCCGCCTCTACCTCTCC < 41bp 1 0.732572101320739 1 0.830146670341492 experiment 0.534855797358522 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35501031 chr19:35501051 synonymous SNV . 0 41 hm5C_associated_SNPs_13610 0 0 1 0 2 GRAMD1A chr19:35501099 5'GT 35501099 Upstream 49bp
chr19 35504556 35504556 1 + G A rs146626930 35504562 + 35504542 35504582 41 CGTGGCCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGA CGTGGCCATGTCACACCCAACCTTTCCCGAGCCAGCAGCGA < 41bp 1 0.0204136352915167 1 0.0469517111778259 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504562 chr19:35504556 synonymous SNV . 0 15 hm5C_associated_SNPs_13611 0 0 1 0 1 GRAMD1A chr19:35504595 5'GT 35504595 Upstream 40bp
chr19 35504556 35504556 1 + G A rs146626930 35504567 + 35504547 35504587 41 CCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGACGCAG CCATGTCACACCCAACCTTTCCCGAGCCAGCAGCGACGCAG < 41bp 1 0.724083595210037 1 0.0949767827987671 experiment 0.551832809579925 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504567 chr19:35504556 synonymous SNV . 0 10 hm5C_associated_SNPs_13612 0 0 1 0 1 GRAMD1A chr19:35504595 5'GT 35504595 Upstream 40bp
chr19 35504580 35504580 1 + C T rs115996530 35504562 + 35504542 35504582 41 CGTGGCCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGA CGTGGCCATGTCACGCCCAACCTTTCCCGAGCCAGCAGTGA < 41bp 1 0.0178676278513316 1 0.0554539263248444 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504562 chr19:35504580 synonymous SNV . 0 39 hm5C_associated_SNPs_13613 0 0 1 0 1 GRAMD1A chr19:35504595 5'GT 35504595 Upstream 16bp
chr19 35504580 35504580 1 + C T rs115996530 35504567 + 35504547 35504587 41 CCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGACGCAG CCATGTCACGCCCAACCTTTCCCGAGCCAGCAGTGACGCAG < 41bp 1 0.759046723710672 1 0.262812912464142 experiment 0.481906552578657 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504567 chr19:35504580 synonymous SNV . 0 34 hm5C_associated_SNPs_13614 0 0 1 0 1 GRAMD1A chr19:35504595 5'GT 35504595 Upstream 16bp
chr19 35504583 35504583 1 + C T rs149214732 35504567 + 35504547 35504587 41 CCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGACGCAG CCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGATGCAG < 41bp 1 0.734482731775792 1 0.0942374467849731 experiment 0.531034536448415 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504567 chr19:35504583 synonymous SNV . 0 37 hm5C_associated_SNPs_13615 0 0 1 0 1 GRAMD1A chr19:35504595 5'GT 35504595 Upstream 13bp
chr19 35741258 35741258 1 + C T rs141731488 35741270 + 35741250 35741290 41 AACCCCTACCACGTGGTGATCCTCTTCCAGCCTGTGACCCT AACCCCTATCACGTGGTGATCCTCTTCCAGCCTGTGACCCT < 41bp 1 0.101866727848207 1 0.0124954283237457 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35741270 chr19:35741258 nonsynonymous SNV 0.807 0 9 hm5C_associated_SNPs_13616 0 0 1 0 2 LSR chr19:35741218 3'AG 35741218 Downstream 41bp
chr19 35741258 35741258 1 + C T rs141731488 35741270 + 35741250 35741290 41 AACCCCTACCACGTGGTGATCCTCTTCCAGCCTGTGACCCT AACCCCTATCACGTGGTGATCCTCTTCCAGCCTGTGACCCT < 41bp 1 0.101866727848207 1 0.0124954283237457 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35741270 chr19:35741258 nonsynonymous SNV 0.807 0 9 hm5C_associated_SNPs_13616 0 0 1 0 2 LSR chr19:35741228 3'AG 35741228 Downstream 31bp
chr19 35773534 35773534 1 + C T rs145846674 35773554 + 35773534 35773574 41 CGCCAGCCTGACCAGTGGCTCTGTTTTCCCACAACAGGTGA TGCCAGCCTGACCAGTGGCTCTGTTTTCCCACAACAGGTGA < 41bp 1 0.365300790822522 1 0.113521546125412 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HAMP ENSG00000105697 CDS Human protein_coding chr19:35773554 chr19:35773534 synonymous SNV . 0 1 hm5C_associated_SNPs_13620 1 0 1 0 1 HAMP chr19:35773570 5'GT 35773570 Upstream 37bp
chr19 36104786 36104786 1 + C G rs147078031 36104795 + 36104775 36104815 41 TCAAGAAGATCCGGGGAAACCTACTCTGGTAACTGCTTCTT TCAAGAAGATCGGGGGAAACCTACTCTGGTAACTGCTTCTT < 41bp 1 0.556229813031398 1 0.131229341030121 experiment 0.887540373937204 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HAUS5 ENSG00000249115 CDS Human protein_coding chr19:36104795 chr19:36104786 nonsynonymous SNV 0.983 2 12 hm5C_associated_SNPs_13628 0 0 1 0 2 HAUS5 chr19:36104770 3'AG 36104770 Downstream 17bp
chr19 36104786 36104786 1 + C G rs147078031 36104795 + 36104775 36104815 41 TCAAGAAGATCCGGGGAAACCTACTCTGGTAACTGCTTCTT TCAAGAAGATCGGGGGAAACCTACTCTGGTAACTGCTTCTT < 41bp 1 0.556229813031398 1 0.131229341030121 experiment 0.887540373937204 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HAUS5 ENSG00000249115 CDS Human protein_coding chr19:36104795 chr19:36104786 nonsynonymous SNV 0.983 2 12 hm5C_associated_SNPs_13628 0 0 1 0 2 HAUS5 chr19:36104802 5'GT 36104802 Upstream 17bp
chr19 36142187 36142187 1 + C T rs7991 36142189 + 36142169 36142209 41 AATCAAGAACTACAAGACCGCCCCTTTTGACAGCCGCTTCC AATCAAGAACTACAAGACTGCCCCTTTTGACAGCCGCTTCC < 41bp 1 0.290548172341959 1 0.0407769680023193 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COX6B1 ENSG00000126267 CDS Human protein_coding chr19:36142189 chr19:36142187 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_13630 2 0 1 0 2 COX6B1 chr19:36142135 3'AG 36142135 Downstream 53bp
chr19 36142187 36142187 1 + C T rs7991 36142189 + 36142169 36142209 41 AATCAAGAACTACAAGACCGCCCCTTTTGACAGCCGCTTCC AATCAAGAACTACAAGACTGCCCCTTTTGACAGCCGCTTCC < 41bp 1 0.290548172341959 1 0.0407769680023193 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COX6B1 ENSG00000126267 CDS Human protein_coding chr19:36142189 chr19:36142187 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_13630 2 0 1 0 2 COX6B1 chr19:36142251 5'GT 36142251 Upstream 65bp
chr19 36216701 36216701 1 + G A rs146372727 36216704 + 36216684 36216724 41 TATCCAACCCGGGCCACGCGCAAACGGCGCCACTGGGTGAG TATCCAACCCGGGCCACACGCAAACGGCGCCACTGGGTGAG < 41bp 1 0.229110230937744 1 0.472459077835083 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216704 chr19:36216701 synonymous SNV . 0 18 hm5C_associated_SNPs_13631 0 0 1 0 2 KMT2B chr19:36216624 3'AG 36216624 Downstream 78bp
chr19 36216701 36216701 1 + G A rs146372727 36216704 + 36216684 36216724 41 TATCCAACCCGGGCCACGCGCAAACGGCGCCACTGGGTGAG TATCCAACCCGGGCCACACGCAAACGGCGCCACTGGGTGAG < 41bp 1 0.229110230937744 1 0.472459077835083 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216704 chr19:36216701 synonymous SNV . 0 18 hm5C_associated_SNPs_13631 0 0 1 0 2 KMT2B chr19:36216719 5'GT 36216719 Upstream 19bp
chr19 36227616 36227616 1 + G A rs138094783 36227620 + 36227600 36227640 41 CGAGCTCTGAGGAAGAGCCTCCATCCCCAGATGATAAAGAG CGAGCTCTGAGGAAGAACCTCCATCCCCAGATGATAAAGAG < 41bp 1 0.00945782867395756 1 0.194140583276749 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36227620 chr19:36227616 synonymous SNV . 0 17 hm5C_associated_SNPs_13632 0 0 1 0 1 KMT2B chr19:36227591 3'AG 36227591 Downstream 26bp
chr19 36278118 36278118 1 + G A rs202050153 36278132 + 36278112 36278152 41 TCCTGCGCCCTGGGGGTGCCCCACCCCCGCCCCCTAAGAAC TCCTGCACCCTGGGGGTGCCCCACCCCCGCCCCCTAAGAAC < 41bp 1 0.178798143395757 1 0.243954569101334 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36278132 chr19:36278118 nonsynonymous SNV 0.971 1 7 hm5C_associated_SNPs_13633 0 0 1 0 1 ARHGAP33 chr19:36278070 3'AG 36278070 Downstream 49bp
chr19 36278119 36278119 1 + C A rs551584144 36278132 + 36278112 36278152 41 TCCTGCGCCCTGGGGGTGCCCCACCCCCGCCCCCTAAGAAC TCCTGCGACCTGGGGGTGCCCCACCCCCGCCCCCTAAGAAC < 41bp 1 0.186311340062004 1 0.420599639415741 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36278132 chr19:36278119 synonymous SNV . 0 8 hm5C_associated_SNPs_13634 0 0 1 0 1 ARHGAP33 chr19:36278070 3'AG 36278070 Downstream 50bp
chr19 36510140 36510140 1 + G A rs186345002 36510139 + 36510119 36510159 41 ATCGTTCTTGCCCTCAGGTTCGTCCAGCTCCACGCCCACCC ATCGTTCTTGCCCTCAGGTTCATCCAGCTCCACGCCCACCC < 41bp 1 0.179403731388053 1 0.0380126237869263 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLIP3;LOC101927572 ENSG00000105270 CDS Human protein_coding chr19:36510139 chr19:36510140 synonymous SNV . 0 22 hm5C_associated_SNPs_13638 0 0 0 0 1 CLIP3;LOC101927572 chr19:36510136 3'AG 36510136 Downstream 5bp
chr19 36510140 36510140 1 + G A rs186345002 36510143 + 36510123 36510163 41 TTCTTGCCCTCAGGTTCGTCCAGCTCCACGCCCACCCACTG TTCTTGCCCTCAGGTTCATCCAGCTCCACGCCCACCCACTG < 41bp 1 0.518870774110207 1 0.788121461868286 experiment 0.962258451779587 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLIP3;LOC101927572 ENSG00000105270 CDS Human protein_coding chr19:36510143 chr19:36510140 synonymous SNV . 0 18 hm5C_associated_SNPs_13639 0 0 0 0 1 CLIP3;LOC101927572 chr19:36510136 3'AG 36510136 Downstream 5bp
chr19 36572460 36572460 1 + C T rs148667984 36572466 + 36572446 36572486 41 CACTGGCAGAAAAACATCTTCAGCAATGTGAGTGGCTTCCT CACTGGCAGAAAAATATCTTCAGCAATGTGAGTGGCTTCCT < 41bp 1 0.524171833097201 1 0.266712486743927 experiment 0.951656333805599 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36572466 chr19:36572460 synonymous SNV . 0 15 hm5C_associated_SNPs_13640 2 0 1 0 1 WDR62 chr19:36572472 5'GT 36572472 Upstream 13bp
chr19 36593915 36593915 1 + T G rs61741470 36593911 + 36593891 36593931 41 TGAAGTCTCCAGAGGTCAAGCTCATGGACCGAGGCGGAAGC TGAAGTCTCCAGAGGTCAAGCTCAGGGACCGAGGCGGAAGC < 41bp 1 0.491350524127261 1 0.468126326799393 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36593911 chr19:36593915 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_13641 2 0 1 0 2 WDR62 chr19:36593850 3'AG 36593850 Downstream 66bp
chr19 36593915 36593915 1 + T G rs61741470 36593911 + 36593891 36593931 41 TGAAGTCTCCAGAGGTCAAGCTCATGGACCGAGGCGGAAGC TGAAGTCTCCAGAGGTCAAGCTCAGGGACCGAGGCGGAAGC < 41bp 1 0.491350524127261 1 0.468126326799393 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36593911 chr19:36593915 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_13641 2 0 1 0 2 WDR62 chr19:36593976 5'GT 36593976 Upstream 62bp
chr19 36593915 36593915 1 + T G rs61741470 36593920 + 36593900 36593940 41 CAGAGGTCAAGCTCATGGACCGAGGCGGAAGCCAGCCCAGA CAGAGGTCAAGCTCAGGGACCGAGGCGGAAGCCAGCCCAGA < 41bp 1 0.452231429316259 1 0.806230247020721 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36593920 chr19:36593915 nonsynonymous SNV 0.000 0 16 hm5C_associated_SNPs_13642 2 0 1 0 2 WDR62 chr19:36593850 3'AG 36593850 Downstream 66bp
chr19 36593915 36593915 1 + T G rs61741470 36593920 + 36593900 36593940 41 CAGAGGTCAAGCTCATGGACCGAGGCGGAAGCCAGCCCAGA CAGAGGTCAAGCTCAGGGACCGAGGCGGAAGCCAGCCCAGA < 41bp 1 0.452231429316259 1 0.806230247020721 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36593920 chr19:36593915 nonsynonymous SNV 0.000 0 16 hm5C_associated_SNPs_13642 2 0 1 0 2 WDR62 chr19:36593976 5'GT 36593976 Upstream 62bp
chr19 36594063 36594063 1 + C A rs17851502 36594068 + 36594048 36594088 41 GTGCCTGCAGGTCCTCGCTGCAGGGAAGGCTGAAGAGACCC GTGCCTGCAGGTCCTAGCTGCAGGGAAGGCTGAAGAGACCC < 41bp 1 0.594202441424898 1 0.886410057544708 experiment 0.811595117150204 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36594068 chr19:36594063 synonymous SNV . 0 16 hm5C_associated_SNPs_13643 0 0 1 0 2 WDR62 chr19:36594058 3'AG 36594058 Downstream 6bp
chr19 36594063 36594063 1 + C A rs17851502 36594068 + 36594048 36594088 41 GTGCCTGCAGGTCCTCGCTGCAGGGAAGGCTGAAGAGACCC GTGCCTGCAGGTCCTAGCTGCAGGGAAGGCTGAAGAGACCC < 41bp 1 0.594202441424898 1 0.886410057544708 experiment 0.811595117150204 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36594068 chr19:36594063 synonymous SNV . 0 16 hm5C_associated_SNPs_13643 0 0 1 0 2 WDR62 chr19:36594109 5'GT 36594109 Upstream 47bp
chr19 38571961 38571961 1 + G A rs77088685 38571948 + 38571928 38571968 41 CTGGCGGGCGACCACAGCTACTGCCTGCTCTGCGCTACTGA CTGGCGGGCGACCACAGCTACTGCCTGCTCTGCACTACTGA < 41bp 1 0.160318854805036 1 0.14638763666153 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SIPA1L3 ENSG00000105738 UTR5 Human protein_coding chr19:38571948 chr19:38571961 . . 0 34 hm5C_associated_SNPs_13646 0 0 1 0 1 SIPA1L3 chr19:38571896 3'AG 38571896 Downstream 66bp
chr19 38871622 38871622 1 + C T rs11541756 38871607 + 38871587 38871627 41 ATCCCCGCCGAGAGCTACACCTTCTTCATTGACATCCTGCT ATCCCCGCCGAGAGCTACACCTTCTTCATTGACATTCTGCT < 41bp 1 0.111498690551802 1 0.0282100141048431 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMD8 ENSG00000099341 CDS Human protein_coding chr19:38871607 chr19:38871622 synonymous SNV . 0 36 hm5C_associated_SNPs_13654 0 0 1 0 2 PSMD8 chr19:38871539 3'AG 38871539 Downstream 84bp
chr19 38871622 38871622 1 + C T rs11541756 38871607 + 38871587 38871627 41 ATCCCCGCCGAGAGCTACACCTTCTTCATTGACATCCTGCT ATCCCCGCCGAGAGCTACACCTTCTTCATTGACATTCTGCT < 41bp 1 0.111498690551802 1 0.0282100141048431 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMD8 ENSG00000099341 CDS Human protein_coding chr19:38871607 chr19:38871622 synonymous SNV . 0 36 hm5C_associated_SNPs_13654 0 0 1 0 2 PSMD8 chr19:38871639 5'GT 38871639 Upstream 18bp
chr19 39125677 39125677 1 + G A rs138580388 39125664 + 39125644 39125684 41 AAGGTGTGGATGAGCAAATACGGCTGGAGTGCCGACGAGTC AAGGTGTGGATGAGCAAATACGGCTGGAGTGCCAACGAGTC < 41bp 1 0.713713132734387 1 0.35817214846611 experiment 0.572573734531225 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39125664 chr19:39125677 nonsynonymous SNV 0.662 1 34 hm5C_associated_SNPs_13661 0 0 1 0 2 EIF3K chr19:39125633 3'AG 39125633 Downstream 45bp
chr19 39125677 39125677 1 + G A rs138580388 39125664 + 39125644 39125684 41 AAGGTGTGGATGAGCAAATACGGCTGGAGTGCCGACGAGTC AAGGTGTGGATGAGCAAATACGGCTGGAGTGCCAACGAGTC < 41bp 1 0.713713132734387 1 0.35817214846611 experiment 0.572573734531225 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39125664 chr19:39125677 nonsynonymous SNV 0.662 1 34 hm5C_associated_SNPs_13661 0 0 1 0 2 EIF3K chr19:39125758 5'GT 39125758 Upstream 82bp
chr19 39125677 39125677 1 + G A rs138580388 39125675 + 39125655 39125695 41 GAGCAAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATCT GAGCAAATACGGCTGGAGTGCCAACGAGTCGGGGCAGATCT < 41bp 1 0.156068151473686 1 0.364366769790649 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39125675 chr19:39125677 nonsynonymous SNV 0.662 1 23 hm5C_associated_SNPs_13662 0 0 1 0 2 EIF3K chr19:39125633 3'AG 39125633 Downstream 45bp
chr19 39125677 39125677 1 + G A rs138580388 39125675 + 39125655 39125695 41 GAGCAAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATCT GAGCAAATACGGCTGGAGTGCCAACGAGTCGGGGCAGATCT < 41bp 1 0.156068151473686 1 0.364366769790649 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39125675 chr19:39125677 nonsynonymous SNV 0.662 1 23 hm5C_associated_SNPs_13662 0 0 1 0 2 EIF3K chr19:39125758 5'GT 39125758 Upstream 82bp
chr19 39125677 39125677 1 + G A rs138580388 39125679 + 39125659 39125699 41 AAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATCTTCAT AAATACGGCTGGAGTGCCAACGAGTCGGGGCAGATCTTCAT < 41bp 1 0.667640740655721 1 0.631798028945923 experiment 0.664718518688558 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39125679 chr19:39125677 nonsynonymous SNV 0.662 1 19 hm5C_associated_SNPs_13663 0 0 1 0 2 EIF3K chr19:39125633 3'AG 39125633 Downstream 45bp
chr19 39125677 39125677 1 + G A rs138580388 39125679 + 39125659 39125699 41 AAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATCTTCAT AAATACGGCTGGAGTGCCAACGAGTCGGGGCAGATCTTCAT < 41bp 1 0.667640740655721 1 0.631798028945923 experiment 0.664718518688558 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39125679 chr19:39125677 nonsynonymous SNV 0.662 1 19 hm5C_associated_SNPs_13663 0 0 1 0 2 EIF3K chr19:39125758 5'GT 39125758 Upstream 82bp
chr19 39215172 39215172 1 + T C rs12986337 39215157 + 39215137 39215177 41 GAGCACCTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGT GAGCACCTGCGCCGCCAGTTCGCCAGCCAGGCCAACGTTGT < 41bp 1 0.798878016887832 1 0.820617437362671 experiment 0.402243966224336 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215157 chr19:39215172 synonymous SNV . 0 36 hm5C_associated_SNPs_13664 1 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 34bp
chr19 39215172 39215172 1 + T C rs12986337 39215163 + 39215143 39215183 41 CTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC CTGCGCCGCCAGTTCGCCAGCCAGGCCAACGTTGTGGGGCC < 41bp 1 0.348714971383035 1 0.71685928106308 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215163 chr19:39215172 synonymous SNV . 0 30 hm5C_associated_SNPs_13665 1 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 34bp
chr19 39215172 39215172 1 + T C rs12986337 39215169 + 39215149 39215189 41 CGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCCCTGGAT CGCCAGTTCGCCAGCCAGGCCAACGTTGTGGGGCCCTGGAT < 41bp 1 0.456183176742751 1 0.0534429848194122 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215169 chr19:39215172 synonymous SNV . 0 24 hm5C_associated_SNPs_13666 1 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 34bp
chr19 39215172 39215172 1 + T C rs12986337 39215182 + 39215162 39215202 41 GCCAGGCCAATGTTGTGGGGCCCTGGATCCAGACCAAGATG GCCAGGCCAACGTTGTGGGGCCCTGGATCCAGACCAAGATG < 41bp 1 0.104352046794516 1 0.0367332398891449 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215182 chr19:39215172 synonymous SNV . 0 11 hm5C_associated_SNPs_13667 1 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 34bp
chr19 39215172 39215172 1 + T C rs12986337 39215184 + 39215164 39215204 41 CAGGCCAATGTTGTGGGGCCCTGGATCCAGACCAAGATGGA CAGGCCAACGTTGTGGGGCCCTGGATCCAGACCAAGATGGA < 41bp 1 0.702907904581321 1 0.654009699821472 experiment 0.594184190837359 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215184 chr19:39215172 synonymous SNV . 0 9 hm5C_associated_SNPs_13668 1 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 34bp
chr19 39215172 39215172 1 + T C rs12986337 39215191 + 39215171 39215211 41 ATGTTGTGGGGCCCTGGATCCAGACCAAGATGGAGGTGAGG ACGTTGTGGGGCCCTGGATCCAGACCAAGATGGAGGTGAGG < 41bp 1 0.239533056881624 1 0.696608364582062 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215191 chr19:39215172 synonymous SNV . 0 2 hm5C_associated_SNPs_13669 1 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 34bp
chr19 39215193 39215193 1 + G A rs145474119 39215182 + 39215162 39215202 41 GCCAGGCCAATGTTGTGGGGCCCTGGATCCAGACCAAGATG GCCAGGCCAATGTTGTGGGGCCCTGGATCCAAACCAAGATG < 41bp 1 0.10421281362232 1 0.0395486950874329 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215182 chr19:39215193 synonymous SNV . 0 32 hm5C_associated_SNPs_13670 1 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 13bp
chr19 39215193 39215193 1 + G A rs145474119 39215184 + 39215164 39215204 41 CAGGCCAATGTTGTGGGGCCCTGGATCCAGACCAAGATGGA CAGGCCAATGTTGTGGGGCCCTGGATCCAAACCAAGATGGA < 41bp 1 0.71844888091096 1 0.552991569042206 experiment 0.56310223817808 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215184 chr19:39215193 synonymous SNV . 0 30 hm5C_associated_SNPs_13671 1 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 13bp
chr19 39215193 39215193 1 + G A rs145474119 39215191 + 39215171 39215211 41 ATGTTGTGGGGCCCTGGATCCAGACCAAGATGGAGGTGAGG ATGTTGTGGGGCCCTGGATCCAAACCAAGATGGAGGTGAGG < 41bp 1 0.137484863404575 1 0.230004519224167 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215191 chr19:39215193 synonymous SNV . 0 23 hm5C_associated_SNPs_13672 1 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 13bp
chr19 39215193 39215193 1 + G A rs145474119 39215195 + 39215175 39215215 41 TGTGGGGCCCTGGATCCAGACCAAGATGGAGGTGAGGCACG TGTGGGGCCCTGGATCCAAACCAAGATGGAGGTGAGGCACG < 41bp 1 0.347489454172836 1 0.714613795280457 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215195 chr19:39215193 synonymous SNV . 0 19 hm5C_associated_SNPs_13673 1 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 13bp
chr19 39219780 39219780 1 + T C rs1136956 39219773 + 39219753 39219793 41 GACCAGGTCATCGCTTCCTTCAAGGTCTTAGCAGGGGACAA GACCAGGTCATCGCTTCCTTCAAGGTCCTAGCAGGGGACAA < 41bp 1 0.693238972659302 1 0.870664358139038 experiment 0.613522054681396 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39219773 chr19:39219780 synonymous SNV . 0 28 hm5C_associated_SNPs_13674 1 0 1 0 1 ACTN4 chr19:39219794 5'GT 39219794 Upstream 15bp
chr19 39390819 39390819 1 + C T rs140517797 39390816 + 39390796 39390836 41 CCGGGGCTGTCGTGGGCTCCCCTCGTCTTCGGCTACGTCAC CCGGGGCTGTCGTGGGCTCCCCTTGTCTTCGGCTACGTCAC < 41bp 1 0.146218483734671 1 0.0868688225746155 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39390816 chr19:39390819 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_13676 0 0 1 0 1 NFKBIB chr19:39390851 5'GT 39390851 Upstream 33bp
chr19 39592138 39592138 1 + C T rs691273 39592152 + 39592132 39592172 41 CTACACCAACCCGCGAGGGCCTGTCCACATCATCACAGGAT CTACACTAACCCGCGAGGGCCTGTCCACATCATCACAGGAT < 41bp 1 0.0731860527070253 1 0.19686895608902 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACP7 ENSG00000183760 CDS Human protein_coding chr19:39592152 chr19:39592138 nonsynonymous SNV 0.414 0 7 hm5C_associated_SNPs_13681 0 0 0 0 2 ACP7 chr19:39592106 3'AG 39592106 Downstream 33bp
chr19 39592138 39592138 1 + C T rs691273 39592152 + 39592132 39592172 41 CTACACCAACCCGCGAGGGCCTGTCCACATCATCACAGGAT CTACACTAACCCGCGAGGGCCTGTCCACATCATCACAGGAT < 41bp 1 0.0731860527070253 1 0.19686895608902 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACP7 ENSG00000183760 CDS Human protein_coding chr19:39592152 chr19:39592138 nonsynonymous SNV 0.414 0 7 hm5C_associated_SNPs_13681 0 0 0 0 2 ACP7 chr19:39592177 5'GT 39592177 Upstream 40bp
chr19 39592150 39592150 1 + G T rs141224151 39592152 + 39592132 39592172 41 CTACACCAACCCGCGAGGGCCTGTCCACATCATCACAGGAT CTACACCAACCCGCGAGGTCCTGTCCACATCATCACAGGAT < 41bp 1 0.0923441679532652 1 0.195372402667999 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACP7 ENSG00000183760 CDS Human protein_coding chr19:39592152 chr19:39592150 nonsynonymous SNV 0.460 0 19 hm5C_associated_SNPs_13682 0 0 0 0 2 ACP7 chr19:39592106 3'AG 39592106 Downstream 45bp
chr19 39592150 39592150 1 + G T rs141224151 39592152 + 39592132 39592172 41 CTACACCAACCCGCGAGGGCCTGTCCACATCATCACAGGAT CTACACCAACCCGCGAGGTCCTGTCCACATCATCACAGGAT < 41bp 1 0.0923441679532652 1 0.195372402667999 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACP7 ENSG00000183760 CDS Human protein_coding chr19:39592152 chr19:39592150 nonsynonymous SNV 0.460 0 19 hm5C_associated_SNPs_13682 0 0 0 0 2 ACP7 chr19:39592177 5'GT 39592177 Upstream 28bp
chr19 39860754 39860754 1 + A G rs139222739 39860763 + 39860743 39860783 41 TATTGGGAGCAATGCAAACACAGGTAAGTGGCGGGGGTGTC TATTGGGAGCAGTGCAAACACAGGTAAGTGGCGGGGGTGTC < 41bp 1 0.756915255712311 1 0.622675359249115 experiment 0.486169488575378 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39860763 chr19:39860754 nonsynonymous SNV 0.941 0 12 hm5C_associated_SNPs_13698 0 0 1 0 1 SAMD4B chr19:39860765 5'GT 39860765 Upstream 12bp
chr19 39948371 39948371 1 + C T rs199661076 39948360 + 39948340 39948380 41 GGACCAGTGGGAGGATGGAGCAGAGGACATTCTAGAGAAAG GGACCAGTGGGAGGATGGAGCAGAGGACATTTTAGAGAAAG < 41bp 1 0.613400336492619 1 0.765747547149658 experiment 0.773199327014762 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948360 chr19:39948371 synonymous SNV . 0 32 hm5C_associated_SNPs_13702 0 0 1 0 2 SUPT5H chr19:39948315 3'AG 39948315 Downstream 57bp
chr19 39948371 39948371 1 + C T rs199661076 39948360 + 39948340 39948380 41 GGACCAGTGGGAGGATGGAGCAGAGGACATTCTAGAGAAAG GGACCAGTGGGAGGATGGAGCAGAGGACATTTTAGAGAAAG < 41bp 1 0.613400336492619 1 0.765747547149658 experiment 0.773199327014762 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948360 chr19:39948371 synonymous SNV . 0 32 hm5C_associated_SNPs_13702 0 0 1 0 2 SUPT5H chr19:39948380 5'GT 39948380 Upstream 10bp
chr19 39948371 39948371 1 + C T rs199661076 39948367 + 39948347 39948387 41 TGGGAGGATGGAGCAGAGGACATTCTAGAGAAAGGTGTGTG TGGGAGGATGGAGCAGAGGACATTTTAGAGAAAGGTGTGTG < 41bp 1 0.0729502815806332 1 0.0435532629489899 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948367 chr19:39948371 synonymous SNV . 0 25 hm5C_associated_SNPs_13703 0 0 1 0 2 SUPT5H chr19:39948315 3'AG 39948315 Downstream 57bp
chr19 39948371 39948371 1 + C T rs199661076 39948367 + 39948347 39948387 41 TGGGAGGATGGAGCAGAGGACATTCTAGAGAAAGGTGTGTG TGGGAGGATGGAGCAGAGGACATTTTAGAGAAAGGTGTGTG < 41bp 1 0.0729502815806332 1 0.0435532629489899 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948367 chr19:39948371 synonymous SNV . 0 25 hm5C_associated_SNPs_13703 0 0 1 0 2 SUPT5H chr19:39948380 5'GT 39948380 Upstream 10bp
chr19 39950209 39950209 1 + C T rs142546168 39950216 + 39950196 39950236 41 TAGGGATCCCAATCTGTGGACTGTCAAATGTAAGGTATGTG TAGGGATCCCAATTTGTGGACTGTCAAATGTAAGGTATGTG < 41bp 1 0.0343661424903884 1 0.0726581811904907 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950216 chr19:39950209 synonymous SNV . 0 14 hm5C_associated_SNPs_13704 0 0 1 0 2 SUPT5H chr19:39950199 3'AG 39950199 Downstream 11bp
chr19 39950209 39950209 1 + C T rs142546168 39950216 + 39950196 39950236 41 TAGGGATCCCAATCTGTGGACTGTCAAATGTAAGGTATGTG TAGGGATCCCAATTTGTGGACTGTCAAATGTAAGGTATGTG < 41bp 1 0.0343661424903884 1 0.0726581811904907 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950216 chr19:39950209 synonymous SNV . 0 14 hm5C_associated_SNPs_13704 0 0 1 0 2 SUPT5H chr19:39950229 5'GT 39950229 Upstream 21bp
chr19 39950209 39950209 1 + C T rs142546168 39950220 + 39950200 39950240 41 GATCCCAATCTGTGGACTGTCAAATGTAAGGTATGTGCTCT GATCCCAATTTGTGGACTGTCAAATGTAAGGTATGTGCTCT < 41bp 1 0.404673715754206 1 0.821165025234222 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950220 chr19:39950209 synonymous SNV . 0 10 hm5C_associated_SNPs_13705 0 0 1 0 2 SUPT5H chr19:39950199 3'AG 39950199 Downstream 11bp
chr19 39950209 39950209 1 + C T rs142546168 39950220 + 39950200 39950240 41 GATCCCAATCTGTGGACTGTCAAATGTAAGGTATGTGCTCT GATCCCAATTTGTGGACTGTCAAATGTAAGGTATGTGCTCT < 41bp 1 0.404673715754206 1 0.821165025234222 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950220 chr19:39950209 synonymous SNV . 0 10 hm5C_associated_SNPs_13705 0 0 1 0 2 SUPT5H chr19:39950229 5'GT 39950229 Upstream 21bp
chr19 41077996 41077996 1 + C G rs75257211 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GGACTCCAAGGGCCCGGGATCCGGGAGCACACACGGTGGGG < 41bp 1 0.400788739539693 1 0.833225727081299 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41077996 nonsynonymous SNV 0.064 0 18 hm5C_associated_SNPs_13709 0 0 1 0 1 SPTBN4 chr19:41077925 3'AG 41077925 Downstream 72bp
chr19 41082803 41082803 1 + G A rs577265984 41082785 + 41082765 41082805 41 ACCCGGAAGTGGGTGCGGGCCAGCCGGCTCGCCCGGGGGCC ACCCGGAAGTGGGTGCGGGCCAGCCGGCTCGCCCGGGGACC < 41bp 1 0.600257996132209 1 0.461624145507812 experiment 0.799484007735582 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SHKBP1 ENSG00000160410 UTR5 Human protein_coding chr19:41082785 chr19:41082803 . . 0 39 hm5C_associated_SNPs_13710 0 0 1 0 1 SHKBP1 chr19:41082891 5'GT 41082891 Upstream 89bp
chr19 41302566 41302566 1 + G A rs148725536 41302571 + 41302551 41302591 41 CCCCGGAGAAGCTACGTTGCCACCTGTCCCCCTTCCCTGGC CCCCGGAGAAGCTACATTGCCACCTGTCCCCCTTCCCTGGC < 41bp 1 0.725647881042831 1 0.470403075218201 experiment 0.548704237914337 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control MIA-RAB4B ENSG00000167578 UTR3 Human protein_coding chr19:41302571 chr19:41302566 . . 0 16 hm5C_associated_SNPs_13715 0 0 0 0 1 MIA-RAB4B chr19:41302475 3'AG 41302475 Downstream 92bp
chr19 41510026 41510026 1 + C A rs183427203 41510016 + 41509996 41510036 41 CTTGTGGACAAGGCTGAGGCCTTCTCTGGCCGGGGAAAAAT CTTGTGGACAAGGCTGAGGCCTTCTCTGGCAGGGGAAAAAT < 41bp 1 0.214911935307695 1 0.121584445238113 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41510016 chr19:41510026 synonymous SNV . 0 31 hm5C_associated_SNPs_13719 0 0 0 0 1 CYP2B6 chr19:41510068 5'GT 41510068 Upstream 43bp
chr19 41770568 41770568 1 + C A rs201686804 41770577 + 41770557 41770597 41 CCGACGACGAACCGGGGCGACCCGGGCACATCAACGAGGAG CCGACGACGAAACGGGGCGACCCGGGCACATCAACGAGGAG < 41bp 1 0.425175064451257 1 0.223275274038315 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41770577 chr19:41770568 nonsynonymous SNV 0.327 0 12 hm5C_associated_SNPs_13741 0 0 1 0 1 HNRNPUL1 chr19:41770597 5'GT 41770597 Upstream 30bp
chr19 41770568 41770568 1 + C A rs201686804 41770578 + 41770558 41770598 41 CGACGACGAACCGGGGCGACCCGGGCACATCAACGAGGAGG CGACGACGAAACGGGGCGACCCGGGCACATCAACGAGGAGG < 41bp 1 0.642256878348049 1 0.575023174285889 experiment 0.715486243303901 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41770578 chr19:41770568 nonsynonymous SNV 0.327 0 11 hm5C_associated_SNPs_13742 0 0 1 0 1 HNRNPUL1 chr19:41770597 5'GT 41770597 Upstream 30bp
chr19 41770568 41770568 1 + C A rs201686804 41770579 + 41770559 41770599 41 GACGACGAACCGGGGCGACCCGGGCACATCAACGAGGAGGT GACGACGAAACGGGGCGACCCGGGCACATCAACGAGGAGGT < 41bp 1 0.684030545237365 1 0.601768493652344 experiment 0.631938909525271 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41770579 chr19:41770568 nonsynonymous SNV 0.327 0 10 hm5C_associated_SNPs_13743 0 0 1 0 1 HNRNPUL1 chr19:41770597 5'GT 41770597 Upstream 30bp
chr19 42364904 42364904 1 + C G rs149249194 42364907 + 42364887 42364927 41 GTCAGAGCTCTGGCAGCCTTCCTCAAAAAGTGAGTTTGGGG GTCAGAGCTCTGGCAGCGTTCCTCAAAAAGTGAGTTTGGGG < 41bp 1 0.216981565478202 1 0.522862672805786 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42364907 chr19:42364904 synonymous SNV . 0 18 hm5C_associated_SNPs_13746 1 0 1 0 2 RPS19 chr19:42364845 3'AG 42364845 Downstream 60bp
chr19 42364904 42364904 1 + C G rs149249194 42364907 + 42364887 42364927 41 GTCAGAGCTCTGGCAGCCTTCCTCAAAAAGTGAGTTTGGGG GTCAGAGCTCTGGCAGCGTTCCTCAAAAAGTGAGTTTGGGG < 41bp 1 0.216981565478202 1 0.522862672805786 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42364907 chr19:42364904 synonymous SNV . 0 18 hm5C_associated_SNPs_13746 1 0 1 0 2 RPS19 chr19:42364915 5'GT 42364915 Upstream 12bp
chr19 42580354 42580354 1 + G C rs529803887 42580336 + 42580316 42580356 41 GCGAGAGCGAGGCTACGGAGCAGGCGAGAGGCGACGGCGAG GCGAGAGCGAGGCTACGGAGCAGGCGAGAGGCGACGGCCAG < 41bp 1 0.767717734704187 1 0.858383774757385 experiment 0.464564530591625 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF574 ENSG00000105732 UTR5 Human protein_coding chr19:42580336 chr19:42580354 . . 0 39 hm5C_associated_SNPs_13748 0 0 1 0 1 ZNF574 chr19:42580438 5'GT 42580438 Upstream 85bp
chr19 42814487 42814487 1 + C T rs201526186 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATAGCCCTGATCAAGTTCCAGAGCA < 41bp 1 0.168435896009252 1 0.105370163917542 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814487 synonymous SNV . 0 33 hm5C_associated_SNPs_13751 0 0 0 4 1 PRR19 chr19:42814423 3'AG 42814423 Downstream 65bp
chr19 42857179 42857179 1 + C T rs149155949 42857193 + 42857173 42857213 41 CACACCCGCCCCGGGTCCGCCAGCCCCCCGCTGCTCCCGGG CACACCTGCCCCGGGTCCGCCAGCCCCCCGCTGCTCCCGGG < 41bp 1 0.187331634289236 1 0.733616828918457 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42857193 chr19:42857179 synonymous SNV . 0 7 hm5C_associated_SNPs_13752 0 0 0 0 1 MEGF8 chr19:42857080 3'AG 42857080 Downstream 100bp
chr19 43906963 43906963 1 + T C rs34538722 43906976 + 43906956 43906996 41 GATCTCCTGACCTCGTGATCCGCCTGCCTTGGCCTCCCAAA GATCTCCCGACCTCGTGATCCGCCTGCCTTGGCCTCCCAAA < 41bp 1 0.457138547278277 1 0.143070042133331 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TEX101 ENSG00000131126 UTR5 Human protein_coding chr19:43906976 chr19:43906963 . . 0 8 hm5C_associated_SNPs_13754 0 0 0 0 2 TEX101 chr19:43906918 3'AG 43906918 Downstream 46bp
chr19 43906963 43906963 1 + T C rs34538722 43906976 + 43906956 43906996 41 GATCTCCTGACCTCGTGATCCGCCTGCCTTGGCCTCCCAAA GATCTCCCGACCTCGTGATCCGCCTGCCTTGGCCTCCCAAA < 41bp 1 0.457138547278277 1 0.143070042133331 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TEX101 ENSG00000131126 UTR5 Human protein_coding chr19:43906976 chr19:43906963 . . 0 8 hm5C_associated_SNPs_13754 0 0 0 0 2 TEX101 chr19:43907011 5'GT 43907011 Upstream 49bp
chr19 44337696 44337696 1 + T C rs190134631 44337690 + 44337670 44337710 41 CTGTCGCCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCA CTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCA < 41bp 1 0.638815479226476 1 0.477903038263321 experiment 0.722369041547048 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337690 chr19:44337696 nonsynonymous SNV 0.001 1 27 hm5C_associated_SNPs_13756 0 0 0 0 2 ZNF283 chr19:44337657 3'AG 44337657 Downstream 40bp
chr19 44337696 44337696 1 + T C rs190134631 44337690 + 44337670 44337710 41 CTGTCGCCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCA CTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCA < 41bp 1 0.638815479226476 1 0.477903038263321 experiment 0.722369041547048 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337690 chr19:44337696 nonsynonymous SNV 0.001 1 27 hm5C_associated_SNPs_13756 0 0 0 0 2 ZNF283 chr19:44337778 5'GT 44337778 Upstream 83bp
chr19 44337751 44337751 1 + T C rs182718468 44337749 + 44337729 44337769 41 GGGTTCACGCTATTCTCCTGCCTCAGCCTCCTGAGTAGCTG GGGTTCACGCTATTCTCCTGCCCCAGCCTCCTGAGTAGCTG < 41bp 1 0.567257423382838 1 0.0545344054698944 experiment 0.865485153234325 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337749 chr19:44337751 nonsynonymous SNV 0.102 2 23 hm5C_associated_SNPs_13757 0 0 0 0 2 ZNF283 chr19:44337657 3'AG 44337657 Downstream 95bp
chr19 44337751 44337751 1 + T C rs182718468 44337749 + 44337729 44337769 41 GGGTTCACGCTATTCTCCTGCCTCAGCCTCCTGAGTAGCTG GGGTTCACGCTATTCTCCTGCCCCAGCCTCCTGAGTAGCTG < 41bp 1 0.567257423382838 1 0.0545344054698944 experiment 0.865485153234325 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337749 chr19:44337751 nonsynonymous SNV 0.102 2 23 hm5C_associated_SNPs_13757 0 0 0 0 2 ZNF283 chr19:44337778 5'GT 44337778 Upstream 28bp
chr19 44337751 44337751 1 + T C rs182718468 44337750 + 44337730 44337770 41 GGTTCACGCTATTCTCCTGCCTCAGCCTCCTGAGTAGCTGG GGTTCACGCTATTCTCCTGCCCCAGCCTCCTGAGTAGCTGG < 41bp 1 0.326812638486338 1 0.101423352956772 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337750 chr19:44337751 nonsynonymous SNV 0.102 2 22 hm5C_associated_SNPs_13758 0 0 0 0 2 ZNF283 chr19:44337657 3'AG 44337657 Downstream 95bp
chr19 44337751 44337751 1 + T C rs182718468 44337750 + 44337730 44337770 41 GGTTCACGCTATTCTCCTGCCTCAGCCTCCTGAGTAGCTGG GGTTCACGCTATTCTCCTGCCCCAGCCTCCTGAGTAGCTGG < 41bp 1 0.326812638486338 1 0.101423352956772 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337750 chr19:44337751 nonsynonymous SNV 0.102 2 22 hm5C_associated_SNPs_13758 0 0 0 0 2 ZNF283 chr19:44337778 5'GT 44337778 Upstream 28bp
chr19 44337751 44337751 1 + T C rs182718468 44337752 + 44337732 44337772 41 TTCACGCTATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGA TTCACGCTATTCTCCTGCCCCAGCCTCCTGAGTAGCTGGGA < 41bp 1 0.417494900765773 1 0.346164733171463 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337752 chr19:44337751 nonsynonymous SNV 0.102 2 20 hm5C_associated_SNPs_13759 0 0 0 0 2 ZNF283 chr19:44337657 3'AG 44337657 Downstream 95bp
chr19 44337751 44337751 1 + T C rs182718468 44337752 + 44337732 44337772 41 TTCACGCTATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGA TTCACGCTATTCTCCTGCCCCAGCCTCCTGAGTAGCTGGGA < 41bp 1 0.417494900765773 1 0.346164733171463 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337752 chr19:44337751 nonsynonymous SNV 0.102 2 20 hm5C_associated_SNPs_13759 0 0 0 0 2 ZNF283 chr19:44337778 5'GT 44337778 Upstream 28bp
chr19 44337751 44337751 1 + T C rs182718468 44337755 + 44337735 44337775 41 ACGCTATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTA ACGCTATTCTCCTGCCCCAGCCTCCTGAGTAGCTGGGACTA < 41bp 1 0.102332516593566 1 0.143629044294357 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337755 chr19:44337751 nonsynonymous SNV 0.102 2 17 hm5C_associated_SNPs_13760 0 0 0 0 2 ZNF283 chr19:44337657 3'AG 44337657 Downstream 95bp
chr19 44337751 44337751 1 + T C rs182718468 44337755 + 44337735 44337775 41 ACGCTATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTA ACGCTATTCTCCTGCCCCAGCCTCCTGAGTAGCTGGGACTA < 41bp 1 0.102332516593566 1 0.143629044294357 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337755 chr19:44337751 nonsynonymous SNV 0.102 2 17 hm5C_associated_SNPs_13760 0 0 0 0 2 ZNF283 chr19:44337778 5'GT 44337778 Upstream 28bp
chr19 44337751 44337751 1 + T C rs182718468 44337756 + 44337736 44337776 41 CGCTATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTAC CGCTATTCTCCTGCCCCAGCCTCCTGAGTAGCTGGGACTAC < 41bp 1 0.508160649652174 1 0.702181100845337 experiment 0.983678700695653 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337756 chr19:44337751 nonsynonymous SNV 0.102 2 16 hm5C_associated_SNPs_13761 0 0 0 0 2 ZNF283 chr19:44337657 3'AG 44337657 Downstream 95bp
chr19 44337751 44337751 1 + T C rs182718468 44337756 + 44337736 44337776 41 CGCTATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTAC CGCTATTCTCCTGCCCCAGCCTCCTGAGTAGCTGGGACTAC < 41bp 1 0.508160649652174 1 0.702181100845337 experiment 0.983678700695653 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337756 chr19:44337751 nonsynonymous SNV 0.102 2 16 hm5C_associated_SNPs_13761 0 0 0 0 2 ZNF283 chr19:44337778 5'GT 44337778 Upstream 28bp
chr19 44337751 44337751 1 + T C rs182718468 44337758 + 44337738 44337778 41 CTATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAG CTATTCTCCTGCCCCAGCCTCCTGAGTAGCTGGGACTACAG < 41bp 1 0.498419467806579 1 0.457826256752014 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337758 chr19:44337751 nonsynonymous SNV 0.102 2 14 hm5C_associated_SNPs_13762 0 0 0 0 2 ZNF283 chr19:44337657 3'AG 44337657 Downstream 95bp
chr19 44337751 44337751 1 + T C rs182718468 44337758 + 44337738 44337778 41 CTATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAG CTATTCTCCTGCCCCAGCCTCCTGAGTAGCTGGGACTACAG < 41bp 1 0.498419467806579 1 0.457826256752014 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337758 chr19:44337751 nonsynonymous SNV 0.102 2 14 hm5C_associated_SNPs_13762 0 0 0 0 2 ZNF283 chr19:44337778 5'GT 44337778 Upstream 28bp
chr19 44337751 44337751 1 + T C rs182718468 44337759 + 44337739 44337779 41 TATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGG TATTCTCCTGCCCCAGCCTCCTGAGTAGCTGGGACTACAGG < 41bp 1 0.580566189063289 1 0.31747430562973 experiment 0.838867621873423 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337759 chr19:44337751 nonsynonymous SNV 0.102 2 13 hm5C_associated_SNPs_13763 0 0 0 0 2 ZNF283 chr19:44337657 3'AG 44337657 Downstream 95bp
chr19 44337751 44337751 1 + T C rs182718468 44337759 + 44337739 44337779 41 TATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGG TATTCTCCTGCCCCAGCCTCCTGAGTAGCTGGGACTACAGG < 41bp 1 0.580566189063289 1 0.31747430562973 experiment 0.838867621873423 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337759 chr19:44337751 nonsynonymous SNV 0.102 2 13 hm5C_associated_SNPs_13763 0 0 0 0 2 ZNF283 chr19:44337778 5'GT 44337778 Upstream 28bp
chr19 44732658 44732658 1 + C G rs922063 44732653 + 44732633 44732673 41 TCTCCAGGGAGGAACTGCGACTGCTCGATCTTACCCAGAGG TCTCCAGGGAGGAACTGCGACTGCTGGATCTTACCCAGAGG < 41bp 1 0.7449277885776 1 0.371895790100098 experiment 0.5101444228448 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF227 ENSG00000131115 CDS Human protein_coding chr19:44732653 chr19:44732658 nonsynonymous SNV 0.341 0 26 hm5C_associated_SNPs_13767 0 0 1 0 3 ZNF227 chr19:44732599 3'AG 44732599 Downstream 60bp
chr19 44732658 44732658 1 + C G rs922063 44732653 + 44732633 44732673 41 TCTCCAGGGAGGAACTGCGACTGCTCGATCTTACCCAGAGG TCTCCAGGGAGGAACTGCGACTGCTGGATCTTACCCAGAGG < 41bp 1 0.7449277885776 1 0.371895790100098 experiment 0.5101444228448 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF227 ENSG00000131115 CDS Human protein_coding chr19:44732653 chr19:44732658 nonsynonymous SNV 0.341 0 26 hm5C_associated_SNPs_13767 0 0 1 0 3 ZNF227 chr19:44732640 3'AG 44732640 Downstream 19bp
chr19 44732658 44732658 1 + C G rs922063 44732653 + 44732633 44732673 41 TCTCCAGGGAGGAACTGCGACTGCTCGATCTTACCCAGAGG TCTCCAGGGAGGAACTGCGACTGCTGGATCTTACCCAGAGG < 41bp 1 0.7449277885776 1 0.371895790100098 experiment 0.5101444228448 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF227 ENSG00000131115 CDS Human protein_coding chr19:44732653 chr19:44732658 nonsynonymous SNV 0.341 0 26 hm5C_associated_SNPs_13767 0 0 1 0 3 ZNF227 chr19:44732725 5'GT 44732725 Upstream 68bp
chr19 45389198 45389198 1 + G C rs1966960 45389205 + 45389185 45389225 41 ACCCCACAGCCTGGAGGGACCTCCCTCCTACAAGCCACCAA ACCCCACAGCCTGCAGGGACCTCCCTCCTACAAGCCACCAA < 41bp 1 0.360623343903622 1 0.0504463315010071 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45389205 chr19:45389198 nonsynonymous SNV 0.748 4 14 hm5C_associated_SNPs_13768 0 0 1 0 2 NECTIN2 chr19:45389194 3'AG 45389194 Downstream 5bp
chr19 45389198 45389198 1 + G C rs1966960 45389205 + 45389185 45389225 41 ACCCCACAGCCTGGAGGGACCTCCCTCCTACAAGCCACCAA ACCCCACAGCCTGCAGGGACCTCCCTCCTACAAGCCACCAA < 41bp 1 0.360623343903622 1 0.0504463315010071 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45389205 chr19:45389198 nonsynonymous SNV 0.748 4 14 hm5C_associated_SNPs_13768 0 0 1 0 2 NECTIN2 chr19:45389257 5'GT 45389257 Upstream 60bp
chr19 45389208 45389208 1 + C T rs571919329 45389205 + 45389185 45389225 41 ACCCCACAGCCTGGAGGGACCTCCCTCCTACAAGCCACCAA ACCCCACAGCCTGGAGGGACCTCTCTCCTACAAGCCACCAA < 41bp 1 0.206023109055078 1 0.100558489561081 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45389205 chr19:45389208 nonsynonymous SNV 0.760 3 24 hm5C_associated_SNPs_13769 0 0 0 0 2 NECTIN2 chr19:45389194 3'AG 45389194 Downstream 15bp
chr19 45389208 45389208 1 + C T rs571919329 45389205 + 45389185 45389225 41 ACCCCACAGCCTGGAGGGACCTCCCTCCTACAAGCCACCAA ACCCCACAGCCTGGAGGGACCTCTCTCCTACAAGCCACCAA < 41bp 1 0.206023109055078 1 0.100558489561081 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45389205 chr19:45389208 nonsynonymous SNV 0.760 3 24 hm5C_associated_SNPs_13769 0 0 0 0 2 NECTIN2 chr19:45389257 5'GT 45389257 Upstream 50bp
chr19 45389224 45389224 1 + A G rs283814 45389205 + 45389185 45389225 41 ACCCCACAGCCTGGAGGGACCTCCCTCCTACAAGCCACCAA ACCCCACAGCCTGGAGGGACCTCCCTCCTACAAGCCACCGA < 41bp 1 0.380943611434486 1 0.0942977070808411 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45389205 chr19:45389224 synonymous SNV . 0 40 hm5C_associated_SNPs_13770 0 1 0 0 2 NECTIN2 chr19:45389194 3'AG 45389194 Downstream 31bp
chr19 45389224 45389224 1 + A G rs283814 45389205 + 45389185 45389225 41 ACCCCACAGCCTGGAGGGACCTCCCTCCTACAAGCCACCAA ACCCCACAGCCTGGAGGGACCTCCCTCCTACAAGCCACCGA < 41bp 1 0.380943611434486 1 0.0942977070808411 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45389205 chr19:45389224 synonymous SNV . 0 40 hm5C_associated_SNPs_13770 0 1 0 0 2 NECTIN2 chr19:45389257 5'GT 45389257 Upstream 34bp
chr19 45490636 45490636 1 + T C rs204468 45490656 + 45490636 45490676 41 TGATGAGTTGTACGAGCAGTCAGATGAGGAGCAGGACTCGG CGATGAGTTGTACGAGCAGTCAGATGAGGAGCAGGACTCGG < 41bp 1 0.682694792493523 1 0.795100688934326 experiment 0.634610415012954 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45490656 chr19:45490636 synonymous SNV . 0 1 hm5C_associated_SNPs_13773 0 0 1 0 1 CLPTM1 chr19:45490681 5'GT 45490681 Upstream 46bp
chr19 45490643 45490643 1 + T C rs143527825 45490656 + 45490636 45490676 41 TGATGAGTTGTACGAGCAGTCAGATGAGGAGCAGGACTCGG TGATGAGCTGTACGAGCAGTCAGATGAGGAGCAGGACTCGG < 41bp 1 0.657301353315198 1 0.724099576473236 experiment 0.685397293369604 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45490656 chr19:45490643 synonymous SNV . 0 8 hm5C_associated_SNPs_13774 0 0 1 0 1 CLPTM1 chr19:45490681 5'GT 45490681 Upstream 39bp
chr19 45493771 45493771 1 + C T rs144674984 45493756 + 45493736 45493776 41 GTCCTCCTCTACATCCTGGACAACGAGACCAACTTCGTGGT GTCCTCCTCTACATCCTGGACAACGAGACCAACTTTGTGGT < 41bp 1 0.404382346587916 1 0.0763591527938843 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45493756 chr19:45493771 synonymous SNV . 0 36 hm5C_associated_SNPs_13775 0 0 1 0 1 CLPTM1 chr19:45493843 5'GT 45493843 Upstream 73bp
chr19 45493771 45493771 1 + C T rs144674984 45493765 + 45493745 45493785 41 TACATCCTGGACAACGAGACCAACTTCGTGGTCCAGGTCAG TACATCCTGGACAACGAGACCAACTTTGTGGTCCAGGTCAG < 41bp 1 0.428507231471487 1 0.102841019630432 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45493765 chr19:45493771 synonymous SNV . 0 27 hm5C_associated_SNPs_13776 0 0 1 0 1 CLPTM1 chr19:45493843 5'GT 45493843 Upstream 73bp
chr19 45648503 45648503 1 + A G rs10419874 45648504 + 45648484 45648524 41 GCCTGGACCTCGACCGTGAACCCAAGAAAGAGGCGGTGAGC GCCTGGACCTCGACCGTGAGCCCAAGAAAGAGGCGGTGAGC < 41bp 1 0.419277180325894 1 0.135405689477921 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP1R37 ENSG00000104866 CDS Human protein_coding chr19:45648504 chr19:45648503 synonymous SNV . 0 20 hm5C_associated_SNPs_13778 0 0 1 0 1 PPP1R37 chr19:45648518 5'GT 45648518 Upstream 16bp
chr19 45762333 45762333 1 + C T rs570301106 45762352 + 45762332 45762372 41 TCGCCTCCTGTCCCGAGGAGCAGCCCCACGTGGGCAACTAC TTGCCTCCTGTCCCGAGGAGCAGCCCCACGTGGGCAACTAC < 41bp 1 0.189384719177796 1 0.606874942779541 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45762352 chr19:45762333 synonymous SNV . 0 2 hm5C_associated_SNPs_13781 0 0 1 0 1 MARK4 chr19:45762247 3'AG 45762247 Downstream 87bp
chr19 45762360 45762360 1 + C T rs141868124 45762352 + 45762332 45762372 41 TCGCCTCCTGTCCCGAGGAGCAGCCCCACGTGGGCAACTAC TCGCCTCCTGTCCCGAGGAGCAGCCCCATGTGGGCAACTAC < 41bp 1 0.190356146016855 1 0.385731220245361 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45762352 chr19:45762360 synonymous SNV . 0 29 hm5C_associated_SNPs_13782 0 0 1 0 1 MARK4 chr19:45762447 5'GT 45762447 Upstream 88bp
chr19 45912890 45912890 1 - C T rs189503912 45912884 - 45912864 45912904 41 TGTAATAATAAATCGTCCTCCCAGGCCAGGCTCCTGCTGGC TGTAATAATAAATCATCCTCCCAGGCCAGGCTCCTGCTGGC < 41bp 1 0.422564886759865 1 0.421060264110565 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CD3EAP;ERCC1 ENSG00000012061;ENSG00000117877 UTR3 Human protein_coding chr19:45912884 chr19:45912890 . . 0 15 hm5C_associated_SNPs_13783 0 0 1 0 1 ERCC1 chr19:45912983 3'AG 45912983 Downstream 94bp
chr19 45912890 45912890 1 - C T rs189503912 45912885 - 45912865 45912905 41 GTGTAATAATAAATCGTCCTCCCAGGCCAGGCTCCTGCTGG GTGTAATAATAAATCATCCTCCCAGGCCAGGCTCCTGCTGG < 41bp 1 0.338185706299491 1 0.40761661529541 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CD3EAP;ERCC1 ENSG00000012061;ENSG00000117877 UTR3 Human protein_coding chr19:45912885 chr19:45912890 . . 0 16 hm5C_associated_SNPs_13784 0 0 1 0 1 ERCC1 chr19:45912983 3'AG 45912983 Downstream 94bp
chr19 45912890 45912890 1 - C T rs189503912 45912887 - 45912867 45912907 41 CAGTGTAATAATAAATCGTCCTCCCAGGCCAGGCTCCTGCT CAGTGTAATAATAAATCATCCTCCCAGGCCAGGCTCCTGCT < 41bp 1 0.286712385509333 1 0.229839503765106 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CD3EAP;ERCC1 ENSG00000012061;ENSG00000117877 UTR3 Human protein_coding chr19:45912887 chr19:45912890 . . 0 18 hm5C_associated_SNPs_13785 0 0 1 0 1 ERCC1 chr19:45912983 3'AG 45912983 Downstream 94bp
chr19 46003757 46003757 1 + T A rs200355710 46003772 + 46003752 46003792 41 ACAGTTTTCAGGACTCTGGCCTCAGAGGACATCCCAGATTT ACAGTATTCAGGACTCTGGCCTCAGAGGACATCCCAGATTT < 41bp 1 0.524986380277771 1 0.286480486392975 experiment 0.950027239444459 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPM1N ENSG00000213889 CDS Human protein_coding chr19:46003772 chr19:46003757 synonymous SNV . 0 6 hm5C_associated_SNPs_13786 0 0 0 0 2 PPM1N chr19:46003714 3'AG 46003714 Downstream 44bp
chr19 46003757 46003757 1 + T A rs200355710 46003772 + 46003752 46003792 41 ACAGTTTTCAGGACTCTGGCCTCAGAGGACATCCCAGATTT ACAGTATTCAGGACTCTGGCCTCAGAGGACATCCCAGATTT < 41bp 1 0.524986380277771 1 0.286480486392975 experiment 0.950027239444459 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPM1N ENSG00000213889 CDS Human protein_coding chr19:46003772 chr19:46003757 synonymous SNV . 0 6 hm5C_associated_SNPs_13786 0 0 0 0 2 PPM1N chr19:46003819 5'GT 46003819 Upstream 63bp
chr19 46025469 46025469 1 + A C rs139701485 46025465 + 46025445 46025485 41 GAGCACATAGAGCGCCGGGTCTCCAATGCAGGTGATGCTCA GAGCACATAGAGCGCCGGGTCTCCCATGCAGGTGATGCTCA < 41bp 1 0.338828468060719 1 0.10065883398056 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46025465 chr19:46025469 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_13787 0 0 1 0 2 VASP chr19:46025426 3'AG 46025426 Downstream 44bp
chr19 46025469 46025469 1 + A C rs139701485 46025465 + 46025445 46025485 41 GAGCACATAGAGCGCCGGGTCTCCAATGCAGGTGATGCTCA GAGCACATAGAGCGCCGGGTCTCCCATGCAGGTGATGCTCA < 41bp 1 0.338828468060719 1 0.10065883398056 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46025465 chr19:46025469 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_13787 0 0 1 0 2 VASP chr19:46025475 5'GT 46025475 Upstream 7bp
chr19 46025469 46025469 1 + A C rs139701485 46025467 + 46025447 46025487 41 GCACATAGAGCGCCGGGTCTCCAATGCAGGTGATGCTCAGA GCACATAGAGCGCCGGGTCTCCCATGCAGGTGATGCTCAGA < 41bp 1 0.264647611222312 1 0.122413992881775 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46025467 chr19:46025469 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_13788 0 0 1 0 2 VASP chr19:46025426 3'AG 46025426 Downstream 44bp
chr19 46025469 46025469 1 + A C rs139701485 46025467 + 46025447 46025487 41 GCACATAGAGCGCCGGGTCTCCAATGCAGGTGATGCTCAGA GCACATAGAGCGCCGGGTCTCCCATGCAGGTGATGCTCAGA < 41bp 1 0.264647611222312 1 0.122413992881775 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46025467 chr19:46025469 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_13788 0 0 1 0 2 VASP chr19:46025475 5'GT 46025475 Upstream 7bp
chr19 46025469 46025469 1 + A C rs139701485 46025468 + 46025448 46025488 41 CACATAGAGCGCCGGGTCTCCAATGCAGGTGATGCTCAGAT CACATAGAGCGCCGGGTCTCCCATGCAGGTGATGCTCAGAT < 41bp 1 0.12707309797753 1 0.0874674320220947 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46025468 chr19:46025469 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_13789 0 0 1 0 2 VASP chr19:46025426 3'AG 46025426 Downstream 44bp
chr19 46025469 46025469 1 + A C rs139701485 46025468 + 46025448 46025488 41 CACATAGAGCGCCGGGTCTCCAATGCAGGTGATGCTCAGAT CACATAGAGCGCCGGGTCTCCCATGCAGGTGATGCTCAGAT < 41bp 1 0.12707309797753 1 0.0874674320220947 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46025468 chr19:46025469 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_13789 0 0 1 0 2 VASP chr19:46025475 5'GT 46025475 Upstream 7bp
chr19 46025752 46025752 1 + G A rs200872555 46025759 + 46025739 46025779 41 CACCCCCTCTCCCGGCAGCACAGGGCCCTGGTGGTGGGGGA CACCCCCTCTCCCAGCAGCACAGGGCCCTGGTGGTGGGGGA < 41bp 1 0.743560221139691 1 0.605915307998657 experiment 0.512879557720618 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46025759 chr19:46025752 synonymous SNV . 0 14 hm5C_associated_SNPs_13790 0 0 1 0 1 VASP chr19:46025839 5'GT 46025839 Upstream 88bp
chr19 46026006 46026006 1 + C T rs201980485 46026007 + 46025987 46026027 41 CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAA CTCAGGGGGGCCCACAGCCTCCAAAGCTGAGAGTGGTCGAA < 41bp 1 0.44495930249059 1 0.257960617542267 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026007 chr19:46026006 nonsynonymous SNV 0.119 0 20 hm5C_associated_SNPs_13791 0 0 1 0 3 VASP chr19:46025976 3'AG 46025976 Downstream 31bp
chr19 46026006 46026006 1 + C T rs201980485 46026007 + 46025987 46026027 41 CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAA CTCAGGGGGGCCCACAGCCTCCAAAGCTGAGAGTGGTCGAA < 41bp 1 0.44495930249059 1 0.257960617542267 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026007 chr19:46026006 nonsynonymous SNV 0.119 0 20 hm5C_associated_SNPs_13791 0 0 1 0 3 VASP chr19:46025979 3'AG 46025979 Downstream 28bp
chr19 46026006 46026006 1 + C T rs201980485 46026007 + 46025987 46026027 41 CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAA CTCAGGGGGGCCCACAGCCTCCAAAGCTGAGAGTGGTCGAA < 41bp 1 0.44495930249059 1 0.257960617542267 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026007 chr19:46026006 nonsynonymous SNV 0.119 0 20 hm5C_associated_SNPs_13791 0 0 1 0 3 VASP chr19:46026076 5'GT 46026076 Upstream 71bp
chr19 46026006 46026006 1 + C T rs201980485 46026008 + 46025988 46026028 41 TCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAAG TCAGGGGGGCCCACAGCCTCCAAAGCTGAGAGTGGTCGAAG < 41bp 1 0.507274157826451 1 0.498609215021133 experiment 0.985451684347098 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026008 chr19:46026006 nonsynonymous SNV 0.119 0 19 hm5C_associated_SNPs_13792 0 0 1 0 3 VASP chr19:46025976 3'AG 46025976 Downstream 31bp
chr19 46026006 46026006 1 + C T rs201980485 46026008 + 46025988 46026028 41 TCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAAG TCAGGGGGGCCCACAGCCTCCAAAGCTGAGAGTGGTCGAAG < 41bp 1 0.507274157826451 1 0.498609215021133 experiment 0.985451684347098 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026008 chr19:46026006 nonsynonymous SNV 0.119 0 19 hm5C_associated_SNPs_13792 0 0 1 0 3 VASP chr19:46025979 3'AG 46025979 Downstream 28bp
chr19 46026006 46026006 1 + C T rs201980485 46026008 + 46025988 46026028 41 TCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAAG TCAGGGGGGCCCACAGCCTCCAAAGCTGAGAGTGGTCGAAG < 41bp 1 0.507274157826451 1 0.498609215021133 experiment 0.985451684347098 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026008 chr19:46026006 nonsynonymous SNV 0.119 0 19 hm5C_associated_SNPs_13792 0 0 1 0 3 VASP chr19:46026076 5'GT 46026076 Upstream 71bp
chr19 46196111 46196111 1 + C T rs369185766 46196120 + 46196100 46196140 41 GCGTTCTACACCATTTGGAGCGGCTGGCACCGCAGGACTGA GCGTTCTACACTATTTGGAGCGGCTGGCACCGCAGGACTGA < 41bp 1 0.46676434738307 1 0.179182380437851 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPCTL ENSG00000011478 CDS Human protein_coding chr19:46196120 chr19:46196111 synonymous SNV . 0 12 hm5C_associated_SNPs_13793 0 0 1 0 1 QPCTL chr19:46196168 5'GT 46196168 Upstream 58bp
chr19 46509917 46509917 1 + C T rs148543679 46509908 + 46509888 46509928 41 GGGCCGCCCAGGCTCCTTGGCCCCCAGGTCGGCCCAGCTCA GGGCCGCCCAGGCTCCTTGGCCCCCAGGTTGGCCCAGCTCA < 41bp 1 0.131490635332415 1 0.0289601683616638 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509908 chr19:46509917 nonsynonymous SNV 0.704 3 30 hm5C_associated_SNPs_13798 0 0 0 0 1 CCDC61 chr19:46509974 5'GT 46509974 Upstream 58bp
chr19 46509917 46509917 1 + C T rs148543679 46509909 + 46509889 46509929 41 GGCCGCCCAGGCTCCTTGGCCCCCAGGTCGGCCCAGCTCAA GGCCGCCCAGGCTCCTTGGCCCCCAGGTTGGCCCAGCTCAA < 41bp 1 0.540414469829544 1 0.153165489435196 experiment 0.919171060340913 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509909 chr19:46509917 nonsynonymous SNV 0.704 3 29 hm5C_associated_SNPs_13799 0 0 0 0 1 CCDC61 chr19:46509974 5'GT 46509974 Upstream 58bp
chr19 46509917 46509917 1 + C T rs148543679 46509910 + 46509890 46509930 41 GCCGCCCAGGCTCCTTGGCCCCCAGGTCGGCCCAGCTCAAC GCCGCCCAGGCTCCTTGGCCCCCAGGTTGGCCCAGCTCAAC < 41bp 1 0.359693174972819 1 0.0219467282295227 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509910 chr19:46509917 nonsynonymous SNV 0.704 3 28 hm5C_associated_SNPs_13800 0 0 0 0 1 CCDC61 chr19:46509974 5'GT 46509974 Upstream 58bp
chr19 46509917 46509917 1 + C T rs148543679 46509911 + 46509891 46509931 41 CCGCCCAGGCTCCTTGGCCCCCAGGTCGGCCCAGCTCAACT CCGCCCAGGCTCCTTGGCCCCCAGGTTGGCCCAGCTCAACT < 41bp 1 0.525669168291059 1 0.300998628139496 experiment 0.948661663417883 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509911 chr19:46509917 nonsynonymous SNV 0.704 3 27 hm5C_associated_SNPs_13801 0 0 0 0 1 CCDC61 chr19:46509974 5'GT 46509974 Upstream 58bp
chr19 46509917 46509917 1 + C T rs148543679 46509912 + 46509892 46509932 41 CGCCCAGGCTCCTTGGCCCCCAGGTCGGCCCAGCTCAACTC CGCCCAGGCTCCTTGGCCCCCAGGTTGGCCCAGCTCAACTC < 41bp 1 0.767913127254676 1 0.792856156826019 experiment 0.464173745490647 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509912 chr19:46509917 nonsynonymous SNV 0.704 3 26 hm5C_associated_SNPs_13802 0 0 0 0 1 CCDC61 chr19:46509974 5'GT 46509974 Upstream 58bp
chr19 46519585 46519585 1 + C T rs181058843 46519595 + 46519575 46519615 41 GGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTTTGTGAA GGTGGTCGCGTGCTCCGCTTCGACCCCACGGCCTTTGTGAA < 41bp 1 0.254538057366931 1 0.301425278186798 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46519595 chr19:46519585 nonsynonymous SNV 0.153 0 11 hm5C_associated_SNPs_13803 0 0 0 0 2 CCDC61 chr19:46519576 3'AG 46519576 Downstream 10bp
chr19 46519585 46519585 1 + C T rs181058843 46519595 + 46519575 46519615 41 GGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTTTGTGAA GGTGGTCGCGTGCTCCGCTTCGACCCCACGGCCTTTGTGAA < 41bp 1 0.254538057366931 1 0.301425278186798 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46519595 chr19:46519585 nonsynonymous SNV 0.153 0 11 hm5C_associated_SNPs_13803 0 0 0 0 2 CCDC61 chr19:46519651 5'GT 46519651 Upstream 67bp
chr19 46878989 46878989 1 + G A rs4239538 46878977 + 46878957 46878997 41 GGCGACGAGCACAAGCGCTCCGTGGTGGACTCGCTGGACAT GGCGACGAGCACAAGCGCTCCGTGGTGGACTCACTGGACAT < 41bp 1 0.522250560055711 1 0.454613119363785 experiment 0.955498879888578 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46878977 chr19:46878989 synonymous SNV . 0 33 hm5C_associated_SNPs_13804 0 0 1 0 1 PPP5C chr19:46879008 5'GT 46879008 Upstream 20bp
chr19 47111761 47111761 1 + G A rs34089805 47111772 + 47111752 47111792 41 TGACTTCCCGGAGTTCCTGACCATGATGGCCAGAAAGATGA TGACTTCCCAGAGTTCCTGACCATGATGGCCAGAAAGATGA < 41bp 1 0.0744979886142824 1 0.0297550857067108 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111772 chr19:47111761 synonymous SNV . 0 10 hm5C_associated_SNPs_13809 2 0 1 0 2 CALM3 chr19:47111739 3'AG 47111739 Downstream 23bp
chr19 47111761 47111761 1 + G A rs34089805 47111772 + 47111752 47111792 41 TGACTTCCCGGAGTTCCTGACCATGATGGCCAGAAAGATGA TGACTTCCCAGAGTTCCTGACCATGATGGCCAGAAAGATGA < 41bp 1 0.0744979886142824 1 0.0297550857067108 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111772 chr19:47111761 synonymous SNV . 0 10 hm5C_associated_SNPs_13809 2 0 1 0 2 CALM3 chr19:47111845 5'GT 47111845 Upstream 85bp
chr19 47700611 47700611 1 + C T rs11083864 47700626 + 47700606 47700646 41 CCTGACCTGCTTCCTGAGGACTTTGTCAGGTTGGTGTCAGT CCTGATCTGCTTCCTGAGGACTTTGTCAGGTTGGTGTCAGT < 41bp 1 0.0773246146428844 1 0.0481594204902649 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SAE1 ENSG00000142230 CDS Human protein_coding chr19:47700626 chr19:47700611 synonymous SNV . 0 6 hm5C_associated_SNPs_13815 0 0 1 0 1 SAE1 chr19:47700634 5'GT 47700634 Upstream 24bp
chr19 47700631 47700631 1 + T C rs77274475 47700626 + 47700606 47700646 41 CCTGACCTGCTTCCTGAGGACTTTGTCAGGTTGGTGTCAGT CCTGACCTGCTTCCTGAGGACTTTGCCAGGTTGGTGTCAGT < 41bp 1 0.057515304213242 1 0.0628405213356018 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SAE1 ENSG00000142230 CDS Human protein_coding chr19:47700626 chr19:47700631 nonsynonymous SNV 1.000 0 26 hm5C_associated_SNPs_13816 0 0 1 0 1 SAE1 chr19:47700634 5'GT 47700634 Upstream 4bp
chr19 47763881 47763881 1 + A C rs551520953 47763890 + 47763870 47763910 41 GGTCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGG GGTCTCCTGGGCCCCCTCGGCCCCCAGGGGCCAGCAAGGGG < 41bp 1 0.223686853008941 1 0.177614152431488 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763890 chr19:47763881 nonsynonymous SNV 0.994 0 12 hm5C_associated_SNPs_13817 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 37bp
chr19 47763881 47763881 1 + A C rs551520953 47763891 + 47763871 47763911 41 GTCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGG GTCTCCTGGGCCCCCTCGGCCCCCAGGGGCCAGCAAGGGGG < 41bp 1 0.680869178136839 1 0.51929122209549 experiment 0.638261643726321 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763891 chr19:47763881 nonsynonymous SNV 0.994 0 11 hm5C_associated_SNPs_13818 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 37bp
chr19 47763881 47763881 1 + A C rs551520953 47763892 + 47763872 47763912 41 TCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGGG TCTCCTGGGCCCCCTCGGCCCCCAGGGGCCAGCAAGGGGGG < 41bp 1 0.40128295926522 1 0.237205773591995 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763892 chr19:47763881 nonsynonymous SNV 0.994 0 10 hm5C_associated_SNPs_13819 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 37bp
chr19 47763881 47763881 1 + A C rs551520953 47763893 + 47763873 47763913 41 CTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGGGC CTCCTGGGCCCCCTCGGCCCCCAGGGGCCAGCAAGGGGGGC < 41bp 1 0.561103953530021 1 0.75317108631134 experiment 0.877792092939959 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763893 chr19:47763881 nonsynonymous SNV 0.994 0 9 hm5C_associated_SNPs_13820 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 37bp
chr19 47763888 47763888 1 + G A rs201968066 47763890 + 47763870 47763910 41 GGTCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGG GGTCTCCTGGGACCCCTCAGCCCCCAGGGGCCAGCAAGGGG < 41bp 1 0.249490451403397 1 0.330574929714203 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763890 chr19:47763888 nonsynonymous SNV 0.976 2 19 hm5C_associated_SNPs_13821 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 44bp
chr19 47763888 47763888 1 + G A rs201968066 47763891 + 47763871 47763911 41 GTCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGG GTCTCCTGGGACCCCTCAGCCCCCAGGGGCCAGCAAGGGGG < 41bp 1 0.755191039252108 1 0.716943979263306 experiment 0.489617921495784 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763891 chr19:47763888 nonsynonymous SNV 0.976 2 18 hm5C_associated_SNPs_13822 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 44bp
chr19 47763888 47763888 1 + G A rs201968066 47763892 + 47763872 47763912 41 TCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGGG TCTCCTGGGACCCCTCAGCCCCCAGGGGCCAGCAAGGGGGG < 41bp 1 0.407894712653187 1 0.525690078735352 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763892 chr19:47763888 nonsynonymous SNV 0.976 2 17 hm5C_associated_SNPs_13823 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 44bp
chr19 47763888 47763888 1 + G A rs201968066 47763893 + 47763873 47763913 41 CTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGGGC CTCCTGGGACCCCTCAGCCCCCAGGGGCCAGCAAGGGGGGC < 41bp 1 0.532931374100649 1 0.733106791973114 experiment 0.934137251798702 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763893 chr19:47763888 nonsynonymous SNV 0.976 2 16 hm5C_associated_SNPs_13824 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 44bp
chr19 47876048 47876048 1 + C T rs562906654 47876028 + 47876008 47876048 41 CCATGTTCAGCCTGGTGGAGCCTGTGCTCACCATCGCAGCC CCATGTTCAGCCTGGTGGAGCCTGTGCTCACCATCGCAGCT < 41bp 1 0.0684701679539303 1 0.127856194972992 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHX34 ENSG00000134815 CDS Human protein_coding chr19:47876028 chr19:47876048 synonymous SNV . 0 41 hm5C_associated_SNPs_13826 0 0 1 0 1 DHX34 chr19:47875987 3'AG 47875987 Downstream 62bp
chr19 48184474 48184474 1 + C T rs3745762 48184471 + 48184451 48184491 41 AGAAGATCGTCCTGGGGCAGCCGCCCTCTGCCACCCCCACG AGAAGATCGTCCTGGGGCAGCCGTCCTCTGCCACCCCCACG < 41bp 1 0.0444537747418651 1 0.179270356893539 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BICRA ENSG00000063169 CDS Human protein_coding chr19:48184471 chr19:48184474 nonsynonymous SNV 0.388 0 24 hm5C_associated_SNPs_13827 0 0 0 0 1 BICRA chr19:48184533 5'GT 48184533 Upstream 60bp
chr19 48259064 48259064 1 + G A rs563493472 48259063 + 48259043 48259083 41 GAGCTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGGTGC GAGCTCGGAGCTGACAGACTCACTCAGGACCCTGAAGGTGC < 41bp 1 0.212719097388243 1 0.0212992429733276 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259063 chr19:48259064 synonymous SNV . 0 22 hm5C_associated_SNPs_13834 0 0 1 0 2 NOP53 chr19:48259013 3'AG 48259013 Downstream 52bp
chr19 48259064 48259064 1 + G A rs563493472 48259063 + 48259043 48259083 41 GAGCTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGGTGC GAGCTCGGAGCTGACAGACTCACTCAGGACCCTGAAGGTGC < 41bp 1 0.212719097388243 1 0.0212992429733276 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259063 chr19:48259064 synonymous SNV . 0 22 hm5C_associated_SNPs_13834 0 0 1 0 2 NOP53 chr19:48259079 5'GT 48259079 Upstream 16bp
chr19 48259787 48259787 1 + C G rs11538664 48259799 + 48259779 48259819 41 CTGTAGCCCGAGGGCAACATCCTTCGAGACCGGTTCAAGAG CTGTAGCCGGAGGGCAACATCCTTCGAGACCGGTTCAAGAG < 41bp 1 0.0678419994875078 1 0.230099499225616 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259799 chr19:48259787 synonymous SNV . 0 9 hm5C_associated_SNPs_13842 0 0 1 0 2 NOP53 chr19:48259785 3'AG 48259785 Downstream 3bp
chr19 48259787 48259787 1 + C G rs11538664 48259799 + 48259779 48259819 41 CTGTAGCCCGAGGGCAACATCCTTCGAGACCGGTTCAAGAG CTGTAGCCGGAGGGCAACATCCTTCGAGACCGGTTCAAGAG < 41bp 1 0.0678419994875078 1 0.230099499225616 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259799 chr19:48259787 synonymous SNV . 0 9 hm5C_associated_SNPs_13842 0 0 1 0 2 NOP53 chr19:48259861 5'GT 48259861 Upstream 75bp
chr19 48259787 48259787 1 + C G rs11538664 48259803 + 48259783 48259823 41 AGCCCGAGGGCAACATCCTTCGAGACCGGTTCAAGAGCTTC AGCCGGAGGGCAACATCCTTCGAGACCGGTTCAAGAGCTTC < 41bp 1 0.76676780831659 1 0.874900877475739 experiment 0.466464383366821 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259803 chr19:48259787 synonymous SNV . 0 5 hm5C_associated_SNPs_13843 0 0 1 0 2 NOP53 chr19:48259785 3'AG 48259785 Downstream 3bp
chr19 48259787 48259787 1 + C G rs11538664 48259803 + 48259783 48259823 41 AGCCCGAGGGCAACATCCTTCGAGACCGGTTCAAGAGCTTC AGCCGGAGGGCAACATCCTTCGAGACCGGTTCAAGAGCTTC < 41bp 1 0.76676780831659 1 0.874900877475739 experiment 0.466464383366821 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259803 chr19:48259787 synonymous SNV . 0 5 hm5C_associated_SNPs_13843 0 0 1 0 2 NOP53 chr19:48259861 5'GT 48259861 Upstream 75bp
chr19 48685811 48685811 1 + G A rs565428109 48685809 + 48685789 48685829 41 GCCAGCTGACCCACTCACACCCGGCCTGCCCGCTGGAGTTC GCCAGCTGACCCACTCACACCCAGCCTGCCCGCTGGAGTTC < 41bp 1 0.350373709462044 1 0.105743288993835 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control C19orf68 ENSG00000185453 CDS Human protein_coding chr19:48685809 chr19:48685811 synonymous SNV . 0 23 hm5C_associated_SNPs_13847 0 0 0 0 1 C19orf68 chr19:48685712 3'AG 48685712 Downstream 100bp
chr19 48685811 48685811 1 + G A rs565428109 48685810 + 48685790 48685830 41 CCAGCTGACCCACTCACACCCGGCCTGCCCGCTGGAGTTCG CCAGCTGACCCACTCACACCCAGCCTGCCCGCTGGAGTTCG < 41bp 1 0.535020696343391 1 0.154535055160522 experiment 0.929958607313219 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control C19orf68 ENSG00000185453 CDS Human protein_coding chr19:48685810 chr19:48685811 synonymous SNV . 0 22 hm5C_associated_SNPs_13848 0 0 0 0 1 C19orf68 chr19:48685712 3'AG 48685712 Downstream 100bp
chr19 48832637 48832637 1 + G A rs535964111 48832653 + 48832633 48832673 41 TCATGGTGCTCTCCCTCATTCTCTGCTGTCTCTCCTTCATC TCATAGTGCTCTCCCTCATTCTCTGCTGTCTCTCCTTCATC < 41bp 1 0.476133587250931 1 0.0383817851543427 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EMP3 ENSG00000142227 CDS Human protein_coding chr19:48832653 chr19:48832637 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_13849 0 0 1 0 1 EMP3 chr19:48832609 3'AG 48832609 Downstream 29bp
chr19 48954421 48954421 1 + G A rs2302951 48954428 + 48954408 48954448 41 AGCTGGAGCCGCCGGGAGCCCTTCCTGCTCAGTGGCGGGGA AGCTGGAGCCGCCAGGAGCCCTTCCTGCTCAGTGGCGGGGA < 41bp 1 0.224060686669279 1 0.265490174293518 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRWD1 ENSG00000105447 CDS Human protein_coding chr19:48954428 chr19:48954421 nonsynonymous SNV 1.000 0 14 hm5C_associated_SNPs_13850 0 0 1 0 1 GRWD1 chr19:48954488 5'GT 48954488 Upstream 68bp
chr19 48959021 48959021 1 + C T rs184790733 48959028 + 48959008 48959048 41 CCCCCTGGCACTGCGGGGGCCTGGCCAGCTCATGGCGTTCC CCCCCTGGCACTGTGGGGGCCTGGCCAGCTCATGGCGTTCC < 41bp 1 0.58691912368801 1 0.0665988028049469 experiment 0.82616175262398 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KCNJ14 ENSG00000182324;ENSG00000105447 UTR5;UTR3 Human other chr19:48959028 chr19:48959021 . . 0 14 hm5C_associated_SNPs_13852 0 0 1 0 1 KCNJ14 chr19:48959115 5'GT 48959115 Upstream 95bp
chr19 48972707 48972707 1 + G A rs546363096 48972687 + 48972667 48972707 41 GGGCGTTTGAGCGGGCTCACCCGAGCCCGCGGGCCAACGCG GGGCGTTTGAGCGGGCTCACCCGAGCCCGCGGGCCAACGCA < 41bp 1 0.688310048510558 1 0.703748345375061 experiment 0.623379902978884 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYTH2 ENSG00000268530 ncRNA_exonic Human protein_coding chr19:48972687 chr19:48972707 . . 0 41 hm5C_associated_SNPs_13854 0 0 1 0 1 CYTH2 chr19:48972783 5'GT 48972783 Upstream 77bp
chr19 49102399 49102399 1 + C T rs1132054 49102417 + 49102397 49102437 41 TGCGGCGACTGGAAGAACCACTTCACGGTGGCCCAGAGCGA TGTGGCGACTGGAAGAACCACTTCACGGTGGCCCAGAGCGA < 41bp 1 0.527441657152146 1 0.22454896569252 experiment 0.945116685695708 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49102417 chr19:49102399 synonymous SNV . 0 3 hm5C_associated_SNPs_13855 0 0 0 0 1 SULT2B1 chr19:49102392 3'AG 49102392 Downstream 8bp
chr19 49469087 49469087 1 + T C rs2230267 49469074 + 49469054 49469094 41 GCTCTGGAAGGCGTGAGCCACTTCTTCCGCGAATTGGCCGA GCTCTGGAAGGCGTGAGCCACTTCTTCCGCGAACTGGCCGA < 41bp 1 0.44084256726328 1 0.0822116732597351 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469074 chr19:49469087 synonymous SNV . 0 34 hm5C_associated_SNPs_13858 5 0 1 0 2 FTL chr19:49469027 3'AG 49469027 Downstream 61bp
chr19 49469087 49469087 1 + T C rs2230267 49469074 + 49469054 49469094 41 GCTCTGGAAGGCGTGAGCCACTTCTTCCGCGAATTGGCCGA GCTCTGGAAGGCGTGAGCCACTTCTTCCGCGAACTGGCCGA < 41bp 1 0.44084256726328 1 0.0822116732597351 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469074 chr19:49469087 synonymous SNV . 0 34 hm5C_associated_SNPs_13858 5 0 1 0 2 FTL chr19:49469173 5'GT 49469173 Upstream 87bp
chr19 49967929 49967929 1 + G A rs145782809 49967942 + 49967922 49967962 41 CCTGCCCGGCTGTCCTGCCTCTCCAAGAACCTGAACTATGA CCTGCCCAGCTGTCCTGCCTCTCCAAGAACCTGAACTATGA < 41bp 1 0.754244038454122 1 0.94271457195282 experiment 0.491511923091756 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ALDH16A1 ENSG00000161618 CDS Human other chr19:49967942 chr19:49967929 nonsynonymous SNV 0.000 0 8 hm5C_associated_SNPs_13864 0 0 0 0 2 ALDH16A1 chr19:49967889 3'AG 49967889 Downstream 41bp
chr19 49967929 49967929 1 + G A rs145782809 49967942 + 49967922 49967962 41 CCTGCCCGGCTGTCCTGCCTCTCCAAGAACCTGAACTATGA CCTGCCCAGCTGTCCTGCCTCTCCAAGAACCTGAACTATGA < 41bp 1 0.754244038454122 1 0.94271457195282 experiment 0.491511923091756 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49967942 chr19:49967929 nonsynonymous SNV 0.000 0 8 hm5C_associated_SNPs_13864 0 0 0 0 2 ALDH16A1 chr19:49968019 5'GT 49968019 Upstream 91bp
chr19 49967981 49967981 1 + T A rs11558188 49967998 + 49967978 49968018 41 TGTTCCCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCA TGTACCCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCA < 41bp 1 0.532538956432851 1 0.533115386962891 experiment 0.934922087134298 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH16A1 ENSG00000161618 CDS Human other chr19:49967998 chr19:49967981 synonymous SNV . 0 4 hm5C_associated_SNPs_13865 0 0 1 0 2 ALDH16A1 chr19:49967889 3'AG 49967889 Downstream 93bp
chr19 49967981 49967981 1 + T A rs11558188 49967998 + 49967978 49968018 41 TGTTCCCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCA TGTACCCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCA < 41bp 1 0.532538956432851 1 0.533115386962891 experiment 0.934922087134298 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49967998 chr19:49967981 synonymous SNV . 0 4 hm5C_associated_SNPs_13865 0 0 1 0 2 ALDH16A1 chr19:49968019 5'GT 49968019 Upstream 39bp
chr19 49967996 49967996 1 + G A rs10421522 49967998 + 49967978 49968018 41 TGTTCCCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCA TGTTCCCTCAACCCTGCCAGCTGGGCCTGAAATAGGGCCCA < 41bp 1 0.619787959837226 1 0.629101276397705 experiment 0.760424080325547 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49967998 chr19:49967996 synonymous SNV . 0 19 hm5C_associated_SNPs_13866 0 0 1 0 1 ALDH16A1 chr19:49968019 5'GT 49968019 Upstream 24bp
chr19 49967996 49967996 1 + G A rs10421522 49968003 + 49967983 49968023 41 CCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCAGGTGA CCTCAACCCTGCCAGCTGGGCCTGAAATAGGGCCCAGGTGA < 41bp 1 0.242568342009664 1 0.0903988182544708 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968003 chr19:49967996 synonymous SNV . 0 14 hm5C_associated_SNPs_13867 0 0 1 0 1 ALDH16A1 chr19:49968019 5'GT 49968019 Upstream 24bp
chr19 49967996 49967996 1 + G A rs10421522 49968004 + 49967984 49968024 41 CTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCAGGTGAG CTCAACCCTGCCAGCTGGGCCTGAAATAGGGCCCAGGTGAG < 41bp 1 0.455515691612196 1 0.343752026557922 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968004 chr19:49967996 synonymous SNV . 0 13 hm5C_associated_SNPs_13868 0 0 1 0 1 ALDH16A1 chr19:49968019 5'GT 49968019 Upstream 24bp
chr19 49967996 49967996 1 + G A rs10421522 49968015 + 49967995 49968035 41 CGGCTGGGCCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGC CAGCTGGGCCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGC < 41bp 1 0.183093162617894 1 0.233989059925079 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968015 chr19:49967996 synonymous SNV . 0 2 hm5C_associated_SNPs_13869 0 0 1 0 1 ALDH16A1 chr19:49968019 5'GT 49968019 Upstream 24bp
chr19 49967996 49967996 1 + G A rs10421522 49968016 + 49967996 49968036 41 GGCTGGGCCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGCC AGCTGGGCCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGCC < 41bp 1 0.246778840208469 1 0.467673629522324 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968016 chr19:49967996 synonymous SNV . 0 1 hm5C_associated_SNPs_13870 0 0 1 0 1 ALDH16A1 chr19:49968019 5'GT 49968019 Upstream 24bp
chr19 49968002 49968002 1 + G A rs141388688 49967998 + 49967978 49968018 41 TGTTCCCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCA TGTTCCCTCAACCCTGCCGGCTGGACCTGAAATAGGGCCCA < 41bp 1 0.663823487254806 1 0.735500633716583 experiment 0.672353025490387 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49967998 chr19:49968002 synonymous SNV . 0 25 hm5C_associated_SNPs_13871 0 0 1 0 1 ALDH16A1 chr19:49968019 5'GT 49968019 Upstream 18bp
chr19 49968002 49968002 1 + G A rs141388688 49968003 + 49967983 49968023 41 CCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCAGGTGA CCTCAACCCTGCCGGCTGGACCTGAAATAGGGCCCAGGTGA < 41bp 1 0.326437171541926 1 0.065927267074585 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968003 chr19:49968002 synonymous SNV . 0 20 hm5C_associated_SNPs_13872 0 0 1 0 1 ALDH16A1 chr19:49968019 5'GT 49968019 Upstream 18bp
chr19 49968002 49968002 1 + G A rs141388688 49968004 + 49967984 49968024 41 CTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCAGGTGAG CTCAACCCTGCCGGCTGGACCTGAAATAGGGCCCAGGTGAG < 41bp 1 0.609863911616447 1 0.30119264125824 experiment 0.780272176767106 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968004 chr19:49968002 synonymous SNV . 0 19 hm5C_associated_SNPs_13873 0 0 1 0 1 ALDH16A1 chr19:49968019 5'GT 49968019 Upstream 18bp
chr19 49968002 49968002 1 + G A rs141388688 49968015 + 49967995 49968035 41 CGGCTGGGCCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGC CGGCTGGACCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGC < 41bp 1 0.182306565051793 1 0.198590308427811 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968015 chr19:49968002 synonymous SNV . 0 8 hm5C_associated_SNPs_13874 0 0 1 0 1 ALDH16A1 chr19:49968019 5'GT 49968019 Upstream 18bp
chr19 49968002 49968002 1 + G A rs141388688 49968016 + 49967996 49968036 41 GGCTGGGCCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGCC GGCTGGACCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGCC < 41bp 1 0.272424313902401 1 0.426885902881622 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968016 chr19:49968002 synonymous SNV . 0 7 hm5C_associated_SNPs_13875 0 0 1 0 1 ALDH16A1 chr19:49968019 5'GT 49968019 Upstream 18bp
chr19 49968002 49968002 1 + G A rs141388688 49968017 + 49967997 49968037 41 GCTGGGCCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGCCA GCTGGACCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGCCA < 41bp 1 0.679553503221047 1 0.837146401405334 experiment 0.640892993557906 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968017 chr19:49968002 synonymous SNV . 0 6 hm5C_associated_SNPs_13876 0 0 1 0 1 ALDH16A1 chr19:49968019 5'GT 49968019 Upstream 18bp
chr19 49990843 49990843 1 + A G rs2271951 49990853 + 49990833 49990873 41 AGGGATAAGAAACCCTGCGACAAAACCTCCTCCTTTTCCAA AGGGATAAGAGACCCTGCGACAAAACCTCCTCCTTTTCCAA < 41bp 1 0.556377632798507 1 0.350229918956757 experiment 0.887244734402985 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RPL13A ENSG00000273189 ncRNA_exonic Human protein_coding chr19:49990853 chr19:49990843 . . 0 11 hm5C_associated_SNPs_13878 0 0 0 0 1 RPL13A chr19:49990901 5'GT 49990901 Upstream 59bp
chr19 49990843 49990843 1 + A G rs2271951 49990861 + 49990841 49990881 41 GAAACCCTGCGACAAAACCTCCTCCTTTTCCAAGCGGCTGC GAGACCCTGCGACAAAACCTCCTCCTTTTCCAAGCGGCTGC < 41bp 1 0.213777608755399 1 0.0832512676715851 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL13A ENSG00000273189 ncRNA_exonic Human protein_coding chr19:49990861 chr19:49990843 . . 0 3 hm5C_associated_SNPs_13879 0 0 0 0 1 RPL13A chr19:49990901 5'GT 49990901 Upstream 59bp
chr19 49990843 49990843 1 + A G rs2271951 49990862 + 49990842 49990882 41 AAACCCTGCGACAAAACCTCCTCCTTTTCCAAGCGGCTGCC AGACCCTGCGACAAAACCTCCTCCTTTTCCAAGCGGCTGCC < 41bp 1 0.446952330254882 1 0.0997992157936096 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL13A ENSG00000273189 ncRNA_exonic Human protein_coding chr19:49990862 chr19:49990843 . . 0 2 hm5C_associated_SNPs_13880 0 0 0 0 1 RPL13A chr19:49990901 5'GT 49990901 Upstream 59bp
chr19 49994070 49994070 1 + C T rs11266873 49994055 + 49994035 49994075 41 GGTATGCTGCCCCACAAAACCAAGCGAGGCCAGGCCGCTCT GGTATGCTGCCCCACAAAACCAAGCGAGGCCAGGCTGCTCT < 41bp 1 0.739924510910526 1 0.513804495334625 experiment 0.520150978178947 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49994055 chr19:49994070 synonymous SNV . 0 36 hm5C_associated_SNPs_13888 0 0 1 0 2 RPL13A chr19:49994036 3'AG 49994036 Downstream 35bp
chr19 49994070 49994070 1 + C T rs11266873 49994055 + 49994035 49994075 41 GGTATGCTGCCCCACAAAACCAAGCGAGGCCAGGCCGCTCT GGTATGCTGCCCCACAAAACCAAGCGAGGCCAGGCTGCTCT < 41bp 1 0.739924510910526 1 0.513804495334625 experiment 0.520150978178947 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49994055 chr19:49994070 synonymous SNV . 0 36 hm5C_associated_SNPs_13888 0 0 1 0 2 RPL13A chr19:49994121 5'GT 49994121 Upstream 52bp
chr19 50183502 50183502 1 + G A rs138647163 50183506 + 50183486 50183526 41 TGGAGAGATGGTAGGCGTGGCTGAGGTATCGGGGTGCTCCC TGGAGAGATGGTAGGCATGGCTGAGGTATCGGGGTGCTCCC < 41bp 1 0.793216151826631 1 0.20240730047226 experiment 0.413567696346739 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50183506 chr19:50183502 nonsynonymous SNV 0.992 0 17 hm5C_associated_SNPs_13912 0 0 1 0 1 PRMT1 chr19:50183510 5'GT 50183510 Upstream 9bp
chr19 50333114 50333114 1 + C A rs149788020 50333110 + 50333090 50333130 41 TCGGCTTCTGTTTGAGAAGGCAGCCCCCCCGGCCTTGCTGG TCGGCTTCTGTTTGAGAAGGCAGCACCCCCGGCCTTGCTGG < 41bp 1 0.575377801472489 1 0.294903010129929 experiment 0.849244397055021 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50333110 chr19:50333114 synonymous SNV . 0 25 hm5C_associated_SNPs_13924 2 0 1 0 1 MED25 chr19:50333205 5'GT 50333205 Upstream 92bp
chr19 50385611 50385611 1 + C G rs146013154 50385593 + 50385573 50385613 41 GCAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCGC GCAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCGGC < 41bp 1 0.273271878416691 1 0.169112622737885 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385593 chr19:50385611 nonsynonymous SNV 0.087 0 39 hm5C_associated_SNPs_13925 0 0 1 0 1 TBC1D17 chr19:50385657 5'GT 50385657 Upstream 47bp
chr19 50385611 50385611 1 + C G rs146013154 50385594 + 50385574 50385614 41 CAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCGCC CAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCGGCC < 41bp 1 0.525805673712302 1 0.281597644090652 experiment 0.948388652575395 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385594 chr19:50385611 nonsynonymous SNV 0.087 0 38 hm5C_associated_SNPs_13926 0 0 1 0 1 TBC1D17 chr19:50385657 5'GT 50385657 Upstream 47bp
chr19 50713632 50713632 1 + G A rs532458856 50713649 + 50713629 50713669 41 GCCGTGACCATGTCGGTGCCCGGGCGGAAGGCGCCCCCCAG GCCATGACCATGTCGGTGCCCGGGCGGAAGGCGCCCCCCAG < 41bp 1 0.789857030741539 1 0.95140016078949 experiment 0.420285938516923 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50713649 chr19:50713632 nonsynonymous SNV 0.375 2 4 hm5C_associated_SNPs_13928 0 0 1 0 1 MYH14 chr19:50713620 3'AG 50713620 Downstream 13bp
chr19 50755955 50755955 1 + C T rs77895476 50755957 + 50755937 50755977 41 CCCTCTGAATGACAACGTCGCAGCCTTGCTCCACCAGAGCA CCCTCTGAATGACAACGTTGCAGCCTTGCTCCACCAGAGCA < 41bp 1 0.156326146194525 1 0.28753125667572 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50755957 chr19:50755955 synonymous SNV . 0 19 hm5C_associated_SNPs_13929 2 0 1 0 2 MYH14 chr19:50755896 3'AG 50755896 Downstream 60bp
chr19 50755955 50755955 1 + C T rs77895476 50755957 + 50755937 50755977 41 CCCTCTGAATGACAACGTCGCAGCCTTGCTCCACCAGAGCA CCCTCTGAATGACAACGTTGCAGCCTTGCTCCACCAGAGCA < 41bp 1 0.156326146194525 1 0.28753125667572 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50755957 chr19:50755955 synonymous SNV . 0 19 hm5C_associated_SNPs_13929 2 0 1 0 2 MYH14 chr19:50756010 5'GT 50756010 Upstream 56bp
chr19 50887601 50887601 1 + G A rs576035899 50887608 + 50887588 50887628 41 CGCGCGGGAGTCAGGGGTCACGGCGGCGTAGGCTGTGGCGG CGCGCGGGAGTCAAGGGTCACGGCGGCGTAGGCTGTGGCGG < 41bp 1 0.704206466622371 1 0.673662304878235 experiment 0.591587066755258 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POLD1 ENSG00000062822 UTR5 Human protein_coding chr19:50887608 chr19:50887601 . . 0 14 hm5C_associated_SNPs_13938 1 0 1 0 1 POLD1 chr19:50887647 5'GT 50887647 Upstream 47bp
chr19 50902141 50902141 1 + C A rs3218768 50902140 + 50902120 50902160 41 GCGGCGGCCAGGCCCAGGGCCCGGGGTGCCCCCAAAGCGGG GCGGCGGCCAGGCCCAGGGCCAGGGGTGCCCCCAAAGCGGG < 41bp 1 0.761381355425751 1 0.759923338890076 experiment 0.477237289148499 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50902140 chr19:50902141 synonymous SNV . 0 22 hm5C_associated_SNPs_13939 0 0 1 0 1 POLD1 chr19:50902105 3'AG 50902105 Downstream 37bp
chr19 50905042 50905042 1 + G A rs20582 50905041 + 50905021 50905061 41 CTGTGACCCCACAGGCCCAGCGCAGCCTGTGCCTGGGGGGC CTGTGACCCCACAGGCCCAGCACAGCCTGTGCCTGGGGGGC < 41bp 1 0.366268903406819 1 0.184560835361481 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905041 chr19:50905042 synonymous SNV . 0 22 hm5C_associated_SNPs_13940 1 0 1 0 1 POLD1 chr19:50905035 3'AG 50905035 Downstream 8bp
chr19 50912126 50912126 1 + G A rs1726790 50912125 + 50912105 50912145 41 CCACAACCTGTGTTACACCACGCTCCTTCGGCCCGGGACTG CCACAACCTGTGTTACACCACACTCCTTCGGCCCGGGACTG < 41bp 1 0.155154516436718 1 0.085919588804245 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912125 chr19:50912126 synonymous SNV . 0 22 hm5C_associated_SNPs_13941 2 0 1 0 2 POLD1 chr19:50912042 3'AG 50912042 Downstream 85bp
chr19 50912126 50912126 1 + G A rs1726790 50912125 + 50912105 50912145 41 CCACAACCTGTGTTACACCACGCTCCTTCGGCCCGGGACTG CCACAACCTGTGTTACACCACACTCCTTCGGCCCGGGACTG < 41bp 1 0.155154516436718 1 0.085919588804245 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912125 chr19:50912126 synonymous SNV . 0 22 hm5C_associated_SNPs_13941 2 0 1 0 2 POLD1 chr19:50912158 5'GT 50912158 Upstream 33bp
chr19 51227325 51227325 1 + C G rs2303688 51227338 + 51227318 51227358 41 CCCACCCCTGAGGACATCGTCACTTACATCCGTGAGTAACC CCCACCCGTGAGGACATCGTCACTTACATCCGTGAGTAACC < 41bp 1 0.183319648569462 1 0.0640768110752106 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CLEC11A ENSG00000105472 CDS Human protein_coding chr19:51227338 chr19:51227325 nonsynonymous SNV 0.838 1 8 hm5C_associated_SNPs_13946 0 0 0 0 1 CLEC11A chr19:51227348 5'GT 51227348 Upstream 24bp
chr19 52905219 52905219 1 + A G rs375181459 52905209 + 52905189 52905229 41 TTGACATTCAGGATTCACTTCCAAAGAGACATATTATGCAA TTGACATTCAGGATTCACTTCCAAAGAGACGTATTATGCAA < 41bp 1 0.128932221256297 1 0.477950870990753 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF528 ENSG00000167555 UTR5 Human protein_coding chr19:52905209 chr19:52905219 . . 0 31 hm5C_associated_SNPs_13950 0 0 0 0 2 ZNF528 chr19:52905200 3'AG 52905200 Downstream 20bp
chr19 52905219 52905219 1 + A G rs375181459 52905209 + 52905189 52905229 41 TTGACATTCAGGATTCACTTCCAAAGAGACATATTATGCAA TTGACATTCAGGATTCACTTCCAAAGAGACGTATTATGCAA < 41bp 1 0.128932221256297 1 0.477950870990753 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF528 ENSG00000167555 UTR5 Human protein_coding chr19:52905209 chr19:52905219 . . 0 31 hm5C_associated_SNPs_13950 0 0 0 0 2 ZNF528 chr19:52905281 5'GT 52905281 Upstream 63bp
chr19 54606446 54606446 1 + C G rs138758439 54606432 + 54606412 54606452 41 ACCCCTTCAGGAGTCGGCGCCTTCCTCAAGAATGCCTGGGA ACCCCTTCAGGAGTCGGCGCCTTCCTCAAGAATGGCTGGGA < 41bp 1 0.103061004035169 1 0.0950077176094055 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54606432 chr19:54606446 nonsynonymous SNV 0.751 1 35 hm5C_associated_SNPs_13952 0 0 1 1 2 NDUFA3 chr19:54606422 3'AG 54606422 Downstream 25bp
chr19 54606446 54606446 1 + C G rs138758439 54606432 + 54606412 54606452 41 ACCCCTTCAGGAGTCGGCGCCTTCCTCAAGAATGCCTGGGA ACCCCTTCAGGAGTCGGCGCCTTCCTCAAGAATGGCTGGGA < 41bp 1 0.103061004035169 1 0.0950077176094055 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54606432 chr19:54606446 nonsynonymous SNV 0.751 1 35 hm5C_associated_SNPs_13952 0 0 1 1 2 NDUFA3 chr19:54606496 5'GT 54606496 Upstream 51bp
chr19 54631704 54631704 1 + G C rs201201131 54631708 + 54631688 54631728 41 AGATGAAGGAGCGGCTGGGGCTGACGGAGATCCGGAAGCAG AGATGAAGGAGCGGCTCGGGCTGACGGAGATCCGGAAGCAG < 41bp 1 0.520607627676212 1 0.181829810142517 experiment 0.958784744647576 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54631708 chr19:54631704 synonymous SNV . 0 17 hm5C_associated_SNPs_13953 0 0 1 0 2 PRPF31 chr19:54631680 3'AG 54631680 Downstream 25bp
chr19 54631704 54631704 1 + G C rs201201131 54631708 + 54631688 54631728 41 AGATGAAGGAGCGGCTGGGGCTGACGGAGATCCGGAAGCAG AGATGAAGGAGCGGCTCGGGCTGACGGAGATCCGGAAGCAG < 41bp 1 0.520607627676212 1 0.181829810142517 experiment 0.958784744647576 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54631708 chr19:54631704 synonymous SNV . 0 17 hm5C_associated_SNPs_13953 0 0 1 0 2 PRPF31 chr19:54631752 5'GT 54631752 Upstream 49bp
chr19 54631704 54631704 1 + G C rs201201131 54631719 + 54631699 54631739 41 CGGCTGGGGCTGACGGAGATCCGGAAGCAGGCCAACCGTAT CGGCTCGGGCTGACGGAGATCCGGAAGCAGGCCAACCGTAT < 41bp 1 0.762737486056269 1 0.85728394985199 experiment 0.474525027887461 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54631719 chr19:54631704 synonymous SNV . 0 6 hm5C_associated_SNPs_13954 0 0 1 0 2 PRPF31 chr19:54631680 3'AG 54631680 Downstream 25bp
chr19 54631704 54631704 1 + G C rs201201131 54631719 + 54631699 54631739 41 CGGCTGGGGCTGACGGAGATCCGGAAGCAGGCCAACCGTAT CGGCTCGGGCTGACGGAGATCCGGAAGCAGGCCAACCGTAT < 41bp 1 0.762737486056269 1 0.85728394985199 experiment 0.474525027887461 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54631719 chr19:54631704 synonymous SNV . 0 6 hm5C_associated_SNPs_13954 0 0 1 0 2 PRPF31 chr19:54631752 5'GT 54631752 Upstream 49bp
chr19 54968038 54968038 1 + A G rs35336528 54968028 + 54968008 54968048 41 GAGCTGCAGATCGTGGGCACCTGCCCTGACATCACCAAGCA GAGCTGCAGATCGTGGGCACCTGCCCTGACGTCACCAAGCA < 41bp 1 0.277716216745484 1 0.487178444862366 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54968028 chr19:54968038 nonsynonymous SNV 0.996 0 31 hm5C_associated_SNPs_13964 0 0 1 0 1 LENG8 chr19:54968100 5'GT 54968100 Upstream 63bp
chr19 55823344 55823344 1 + G A rs12978445 55823357 + 55823337 55823377 41 CCCACCCGGCCGCCCAGACCCAGAGCTGAGCAGCTCTCCCC CCCACCCAGCCGCCCAGACCCAGAGCTGAGCAGCTCTCCCC < 41bp 1 0.792567411707192 1 0.859007596969604 experiment 0.414865176585616 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55823357 chr19:55823344 nonsynonymous SNV 0.316 0 8 hm5C_associated_SNPs_13977 0 0 0 0 1 BRSK1 chr19:55823279 3'AG 55823279 Downstream 66bp
chr19 55897302 55897302 1 + C G rs116572311 55897317 + 55897297 55897337 41 TTCCTCTTTCCGTCTCAGGTCGCCGCTGCGAAGGGAGGTGA TTCCTGTTTCCGTCTCAGGTCGCCGCTGCGAAGGGAGGTGA < 41bp 1 0.529413492168192 1 0.36382469534874 experiment 0.941173015663615 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL28 ENSG00000108107 UTR5 Human protein_coding chr19:55897317 chr19:55897302 . . 0 6 hm5C_associated_SNPs_13978 0 0 1 0 1 RPL28 chr19:55897333 5'GT 55897333 Upstream 32bp
chr19 55897302 55897302 1 + C G rs116572311 55897319 + 55897299 55897339 41 CCTCTTTCCGTCTCAGGTCGCCGCTGCGAAGGGAGGTGAGC CCTGTTTCCGTCTCAGGTCGCCGCTGCGAAGGGAGGTGAGC < 41bp 1 0.208027001409833 1 0.316331088542938 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL28 ENSG00000108107 UTR5 Human protein_coding chr19:55897319 chr19:55897302 . . 0 4 hm5C_associated_SNPs_13979 0 0 1 0 1 RPL28 chr19:55897333 5'GT 55897333 Upstream 32bp
chr19 55897327 55897327 1 + A C rs17700376 55897317 + 55897297 55897337 41 TTCCTCTTTCCGTCTCAGGTCGCCGCTGCGAAGGGAGGTGA TTCCTCTTTCCGTCTCAGGTCGCCGCTGCGCAGGGAGGTGA < 41bp 1 0.499634024133543 1 0.376830041408539 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL28 ENSG00000108107 UTR5 Human protein_coding chr19:55897317 chr19:55897327 . . 0 31 hm5C_associated_SNPs_13980 0 0 1 0 1 RPL28 chr19:55897333 5'GT 55897333 Upstream 7bp
chr19 55897327 55897327 1 + A C rs17700376 55897319 + 55897299 55897339 41 CCTCTTTCCGTCTCAGGTCGCCGCTGCGAAGGGAGGTGAGC CCTCTTTCCGTCTCAGGTCGCCGCTGCGCAGGGAGGTGAGC < 41bp 1 0.208488557779194 1 0.303070783615112 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL28 ENSG00000108107 UTR5 Human protein_coding chr19:55897319 chr19:55897327 . . 0 29 hm5C_associated_SNPs_13981 0 0 1 0 1 RPL28 chr19:55897333 5'GT 55897333 Upstream 7bp
chr19 56172453 56172453 1 + C T rs114531079 56172435 + 56172415 56172455 41 ATTCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGG ATTCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGATGG < 41bp 1 0.581583743811509 1 0.667426586151123 experiment 0.836832512376982 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172435 chr19:56172453 synonymous SNV . 0 39 hm5C_associated_SNPs_13991 0 0 1 0 1 U2AF2 chr19:56172404 3'AG 56172404 Downstream 50bp
chr19 56172453 56172453 1 + C T rs114531079 56172437 + 56172417 56172457 41 TCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGGTC TCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGATGGTC < 41bp 1 0.149488538667489 1 0.100988328456879 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172437 chr19:56172453 synonymous SNV . 0 37 hm5C_associated_SNPs_13992 0 0 1 0 1 U2AF2 chr19:56172404 3'AG 56172404 Downstream 50bp
chr19 56172453 56172453 1 + C T rs114531079 56172438 + 56172418 56172458 41 CCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGGTCT CCAGCCACTGCTCTTCTCCCCACCATGACCCCTGATGGTCT < 41bp 1 0.662969792412587 1 0.663124978542328 experiment 0.674060415174826 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172438 chr19:56172453 synonymous SNV . 0 36 hm5C_associated_SNPs_13993 0 0 1 0 1 U2AF2 chr19:56172404 3'AG 56172404 Downstream 50bp
chr19 56657749 56657749 1 + C G rs531556902 56657743 + 56657723 56657763 41 CCTCACCACCCGAGTGAGCGCTGCCCCCTCACAGAGACCTC CCTCACCACCCGAGTGAGCGCTGCCCGCTCACAGAGACCTC < 41bp 1 0.444709722568139 1 0.165147632360458 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF444 ENSG00000167685 UTR5 Human protein_coding chr19:56657743 chr19:56657749 . . 0 27 hm5C_associated_SNPs_14003 0 0 1 0 1 ZNF444 chr19:56657789 5'GT 56657789 Upstream 41bp
chr19 58352459 58352459 1 + G C rs199923915 58352451 + 58352431 58352471 41 ATGACAGTGGAAACTTTCATCAGCACCAGAATGAGCACATT ATGACAGTGGAAACTTTCATCAGCACCACAATGAGCACATT < 41bp 1 0.695152453661335 1 0.839532673358917 experiment 0.609695092677329 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF587B ENSG00000269343 CDS Human protein_coding chr19:58352451 chr19:58352459 nonsynonymous SNV 0.007 1 29 hm5C_associated_SNPs_14030 0 0 0 0 1 ZNF587B chr19:58352523 5'GT 58352523 Upstream 65bp
chr19 58757770 58757770 1 + C T rs150558952 58757778 + 58757758 58757798 41 TGACACTGGAGACCTGGGAGCATATTGTCTCCCTGGGTAAG TGACACTGGAGATCTGGGAGCATATTGTCTCCCTGGGTAAG < 41bp 1 0.2131730965476 1 0.0533583164215088 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58757778 chr19:58757770 nonsynonymous SNV 0.772 1 13 hm5C_associated_SNPs_14046 0 0 1 0 1 ZNF544 chr19:58757793 5'GT 58757793 Upstream 24bp
chr19 58898650 58898650 1 + A G rs114515295 58898652 + 58898632 58898672 41 CGGCCTCTTCCTGTCTGTACCAGGGCGGCGCGTGGTCTACG CGGCCTCTTCCTGTCTGTGCCAGGGCGGCGCGTGGTCTACG < 41bp 1 0.72169949235999 1 0.748180150985718 experiment 0.556601015280021 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPS5 ENSG00000083845 UTR5 Human protein_coding chr19:58898652 chr19:58898650 . . 0 19 hm5C_associated_SNPs_14048 0 0 1 0 1 RPS5 chr19:58898706 5'GT 58898706 Upstream 57bp
chr19 58898650 58898650 1 + A G rs114515295 58898657 + 58898637 58898677 41 TCTTCCTGTCTGTACCAGGGCGGCGCGTGGTCTACGCCGAG TCTTCCTGTCTGTGCCAGGGCGGCGCGTGGTCTACGCCGAG < 41bp 1 0.669901732132177 1 0.559240281581879 experiment 0.660196535735646 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPS5 ENSG00000083845 UTR5 Human protein_coding chr19:58898657 chr19:58898650 . . 0 14 hm5C_associated_SNPs_14049 0 0 1 0 1 RPS5 chr19:58898706 5'GT 58898706 Upstream 57bp
chr19 58898674 58898674 1 + C T rs111590146 58898657 + 58898637 58898677 41 TCTTCCTGTCTGTACCAGGGCGGCGCGTGGTCTACGCCGAG TCTTCCTGTCTGTACCAGGGCGGCGCGTGGTCTACGCTGAG < 41bp 1 0.545678320906794 1 0.444034069776535 experiment 0.908643358186412 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPS5 ENSG00000083845 UTR5 Human protein_coding chr19:58898657 chr19:58898674 . . 0 38 hm5C_associated_SNPs_14050 0 0 1 0 1 RPS5 chr19:58898706 5'GT 58898706 Upstream 33bp
chr19 58906084 58906084 1 + C T rs144955468 58906069 + 58906049 58906089 41 GGCTCCTCGAACTCCTATGCCATTAAGAAGAAGGACGAGCT GGCTCCTCGAACTCCTATGCCATTAAGAAGAAGGATGAGCT < 41bp 1 0.186323719851103 1 0.102852433919907 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906069 chr19:58906084 synonymous SNV . 0 36 hm5C_associated_SNPs_14051 0 0 1 0 1 RPS5 chr19:58906049 3'AG 58906049 Downstream 36bp
chr19 58906084 58906084 1 + C T rs144955468 58906094 + 58906074 58906114 41 AGAAGAAGGACGAGCTGGAGCGTGTGGCCAAGTCCAACCGC AGAAGAAGGATGAGCTGGAGCGTGTGGCCAAGTCCAACCGC < 41bp 1 0.677225067046376 1 0.333525657653809 experiment 0.645549865907247 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906094 chr19:58906084 synonymous SNV . 0 11 hm5C_associated_SNPs_14052 0 0 1 0 1 RPS5 chr19:58906049 3'AG 58906049 Downstream 36bp
chr19 58906084 58906084 1 + C T rs144955468 58906102 + 58906082 58906122 41 GACGAGCTGGAGCGTGTGGCCAAGTCCAACCGCTGATTTTC GATGAGCTGGAGCGTGTGGCCAAGTCCAACCGCTGATTTTC < 41bp 1 0.675307674895084 1 0.499453186988831 experiment 0.649384650209831 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906102 chr19:58906084 synonymous SNV . 0 3 hm5C_associated_SNPs_14053 0 0 1 0 1 RPS5 chr19:58906049 3'AG 58906049 Downstream 36bp
chr19 59080325 59080325 1 + C T rs73068329 59080345 + 59080325 59080365 41 CCAGGAGGCCATCCAGGATACCAGGACTGGGAGAGAATGTG TCAGGAGGCCATCCAGGATACCAGGACTGGGAGAGAATGTG < 41bp 1 0.436360951815928 1 0.143647938966751 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MZF1-AS1 ENSG00000267858 ncRNA_exonic Human antisense chr19:59080345 chr19:59080325 . . 0 1 hm5C_associated_SNPs_14057 0 0 0 0 2 MZF1-AS1 chr19:59080280 3'AG 59080280 Downstream 46bp
chr19 59080325 59080325 1 + C T rs73068329 59080345 + 59080325 59080365 41 CCAGGAGGCCATCCAGGATACCAGGACTGGGAGAGAATGTG TCAGGAGGCCATCCAGGATACCAGGACTGGGAGAGAATGTG < 41bp 1 0.436360951815928 1 0.143647938966751 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MZF1-AS1 ENSG00000267858 ncRNA_exonic Human antisense chr19:59080345 chr19:59080325 . . 0 1 hm5C_associated_SNPs_14057 0 0 0 0 2 MZF1-AS1 chr19:59080362 5'GT 59080362 Upstream 38bp
chr19 59102866 59102866 1 + A T rs528025900 59102868 + 59102848 59102888 41 CAGAGCTTTGTTCTCAGGACCCACCCGAGGATGGGTCACCA CAGAGCTTTGTTCTCAGGTCCCACCCGAGGATGGGTCACCA < 41bp 1 0.0211307141575499 1 0.107530772686005 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CENPBD1P1;NONE ENSG00000213753 ncRNA_exonic Human transcribed_processed_pseudogene chr19:59102868 chr19:59102866 . . 0 19 hm5C_associated_SNPs_14060 0 0 0 0 1 CENPBD1P1;NONE chr19:59102865 3'AG 59102865 Downstream 2bp
chr19 59102874 59102874 1 + G A rs201252898 59102868 + 59102848 59102888 41 CAGAGCTTTGTTCTCAGGACCCACCCGAGGATGGGTCACCA CAGAGCTTTGTTCTCAGGACCCACCCAAGGATGGGTCACCA < 41bp 1 0.0250028513668165 1 0.0569269955158234 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CENPBD1P1;NONE ENSG00000213753 ncRNA_exonic Human transcribed_processed_pseudogene chr19:59102868 chr19:59102874 . . 0 27 hm5C_associated_SNPs_14061 0 0 0 1 1 CENPBD1P1;NONE chr19:59102865 3'AG 59102865 Downstream 10bp
chr19 59102878 59102878 1 + A G rs80223678 59102868 + 59102848 59102888 41 CAGAGCTTTGTTCTCAGGACCCACCCGAGGATGGGTCACCA CAGAGCTTTGTTCTCAGGACCCACCCGAGGGTGGGTCACCA < 41bp 1 0.0208827262658672 1 0.0699622929096222 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CENPBD1P1;NONE ENSG00000213753 ncRNA_exonic Human transcribed_processed_pseudogene chr19:59102868 chr19:59102878 . . 0 31 hm5C_associated_SNPs_14062 0 0 0 1 1 CENPBD1P1;NONE chr19:59102865 3'AG 59102865 Downstream 14bp
chr20 330408 330408 1 + C G rs11556643 330392 + 330372 330412 41 CTGCACCTCTTCTATGAGGACTGTGCAGGCACTGCTCTCAG CTGCACCTCTTCTATGAGGACTGTGCAGGCACTGCTGTCAG < 41bp 1 0.37243549752329 1 0.0443779826164246 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NRSN2 ENSG00000125841 CDS Human protein_coding chr20:330392 chr20:330408 nonsynonymous SNV 0.046 2 37 hm5C_associated_SNPs_14080 0 0 1 0 1 NRSN2 chr20:330476 5'GT 330476 Upstream 69bp
chr20 368883 368883 1 + G A rs61740293 368903 + 368883 368923 41 GAGGAGGGCGGGCGGGCCTACCAGGCCCTGCACTGCCCTAC AAGGAGGGCGGGCGGGCCTACCAGGCCCTGCACTGCCCTAC < 41bp 1 0.697590299975518 1 0.778970837593079 experiment 0.604819400048964 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIB3 ENSG00000101255 CDS Human protein_coding chr20:368903 chr20:368883 nonsynonymous SNV 0.029 0 1 hm5C_associated_SNPs_14081 0 0 1 0 1 TRIB3 chr20:368945 5'GT 368945 Upstream 63bp
chr20 1145000 1145000 1 + C A rs114332593 1145015 + 1144995 1145035 41 GAGATCTGGCTTCCCAAGAGCACTTATTGACCCTTCCTCAG GAGATATGGCTTCCCAAGAGCACTTATTGACCCTTCCTCAG < 41bp 1 0.371970422825821 1 0.0315294861793518 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1145015 chr20:1145000 nonsynonymous SNV 0.999 4 6 hm5C_associated_SNPs_14082 0 0 1 0 1 PSMF1 chr20:1144962 3'AG 1144962 Downstream 39bp
chr20 1905432 1905432 1 + G A rs191734008 1905422 + 1905402 1905442 41 GTCCCTAGAGAACACTGGATCTAATGAACGGAACATCTATA GTCCCTAGAGAACACTGGATCTAATGAACGAAACATCTATA < 41bp 1 0.168490322406045 1 0.0549083054065704 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1905422 chr20:1905432 synonymous SNV . 0 31 hm5C_associated_SNPs_14085 0 0 0 0 2 SIRPA chr20:1905410 3'AG 1905410 Downstream 23bp
chr20 1905432 1905432 1 + G A rs191734008 1905422 + 1905402 1905442 41 GTCCCTAGAGAACACTGGATCTAATGAACGGAACATCTATA GTCCCTAGAGAACACTGGATCTAATGAACGAAACATCTATA < 41bp 1 0.168490322406045 1 0.0549083054065704 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1905422 chr20:1905432 synonymous SNV . 0 31 hm5C_associated_SNPs_14085 0 0 0 0 2 SIRPA chr20:1905523 5'GT 1905523 Upstream 92bp
chr20 2635157 2635157 1 + C T rs144743768 2635143 + 2635123 2635163 41 TACTCTTGGGAGTTGGGGATCCCAAGATTGGTGCCGCAATA TACTCTTGGGAGTTGGGGATCCCAAGATTGGTGCTGCAATA < 41bp 1 0.562838780093158 1 0.183098644018173 experiment 0.874322439813684 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635143 chr20:2635157 synonymous SNV . 0 35 hm5C_associated_SNPs_14096 0 0 1 0 2 NOP56 chr20:2635060 3'AG 2635060 Downstream 98bp
chr20 2635157 2635157 1 + C T rs144743768 2635143 + 2635123 2635163 41 TACTCTTGGGAGTTGGGGATCCCAAGATTGGTGCCGCAATA TACTCTTGGGAGTTGGGGATCCCAAGATTGGTGCTGCAATA < 41bp 1 0.562838780093158 1 0.183098644018173 experiment 0.874322439813684 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635143 chr20:2635157 synonymous SNV . 0 35 hm5C_associated_SNPs_14096 0 0 1 0 2 NOP56 chr20:2635221 5'GT 2635221 Upstream 65bp
chr20 2732359 2732359 1 + C T rs575938475 2732361 + 2732341 2732381 41 CCCAGCTCTGAACGAGCCCACCATTGACTACGGATTCCAGA CCCAGCTCTGAACGAGCCTACCATTGACTACGGATTCCAGA < 41bp 1 0.0255276115304796 1 0.101852744817734 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EBF4 ENSG00000088881 CDS Human protein_coding chr20:2732361 chr20:2732359 synonymous SNV . 0 19 hm5C_associated_SNPs_14100 0 0 0 0 2 EBF4 chr20:2732346 3'AG 2732346 Downstream 14bp
chr20 2732359 2732359 1 + C T rs575938475 2732361 + 2732341 2732381 41 CCCAGCTCTGAACGAGCCCACCATTGACTACGGATTCCAGA CCCAGCTCTGAACGAGCCTACCATTGACTACGGATTCCAGA < 41bp 1 0.0255276115304796 1 0.101852744817734 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EBF4 ENSG00000088881 CDS Human protein_coding chr20:2732361 chr20:2732359 synonymous SNV . 0 19 hm5C_associated_SNPs_14100 0 0 0 0 2 EBF4 chr20:2732434 5'GT 2732434 Upstream 76bp
chr20 2843961 2843961 1 + C T rs78044640 2843957 + 2843937 2843977 41 CTCGTGTTGCGGAGACTTTACCCCCTGGCCATCCAGATATG CTCGTGTTGCGGAGACTTTACCCCTTGGCCATCCAGATATG < 41bp 1 0.349780970977544 1 0.0749313533306122 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2843957 chr20:2843961 synonymous SNV . 0 25 hm5C_associated_SNPs_14101 0 0 1 0 1 VPS16 chr20:2843936 3'AG 2843936 Downstream 26bp
chr20 2846052 2846052 1 + T C rs61729229 2846046 + 2846026 2846066 41 AAGCCCAGCTTTCCTGCAGGCTCTGGTGGCTGAAGCTGACT AAGCCCAGCTTTCCTGCAGGCTCTGGCGGCTGAAGCTGACT < 41bp 1 0.183007882665335 1 0.0580622553825378 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2846046 chr20:2846052 nonsynonymous SNV 0.998 4 27 hm5C_associated_SNPs_14102 0 0 1 0 2 VPS16 chr20:2846045 3'AG 2846045 Downstream 8bp
chr20 2846052 2846052 1 + T C rs61729229 2846046 + 2846026 2846066 41 AAGCCCAGCTTTCCTGCAGGCTCTGGTGGCTGAAGCTGACT AAGCCCAGCTTTCCTGCAGGCTCTGGCGGCTGAAGCTGACT < 41bp 1 0.183007882665335 1 0.0580622553825378 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2846046 chr20:2846052 nonsynonymous SNV 0.998 4 27 hm5C_associated_SNPs_14102 0 0 1 0 2 VPS16 chr20:2846141 5'GT 2846141 Upstream 90bp
chr20 3776469 3776469 1 + C T rs183999341 3776450 + 3776430 3776470 41 GCGGTCAGAGGCGCCTGGAGCGAGCGAATCCTGGCCCACCG GCGGTCAGAGGCGCCTGGAGCGAGCGAATCCTGGCCCACTG < 41bp 1 0.748261179510385 1 0.914251863956451 experiment 0.50347764097923 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC25B ENSG00000101224 intronic Human protein_coding chr20:3776450 chr20:3776469 . . 0 40 hm5C_associated_SNPs_14104 0 0 0 0 1 CDC25B chr20:3776526 5'GT 3776526 Upstream 58bp
chr20 3893159 3893159 1 + T C rs149583615 3893142 + 3893122 3893162 41 TTTTTGGTCTCTGCTGTCTTCTTACTGGCTGTACCACTTTT TTTTTGGTCTCTGCTGTCTTCTTACTGGCTGTACCACCTTT < 41bp 1 0.139819752604035 1 0.0810133814811707 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PANK2 ENSG00000125779 CDS Human protein_coding chr20:3893142 chr20:3893159 synonymous SNV . 0 38 hm5C_associated_SNPs_14116 0 0 1 1 1 PANK2 chr20:3893105 3'AG 3893105 Downstream 55bp
chr20 5163049 5163049 1 + A G rs35796695 5163068 + 5163048 5163088 41 TACTGAGTCTGGTCAAGAAGCATTATCGACTGCAGTTCTAC TGCTGAGTCTGGTCAAGAAGCATTATCGACTGCAGTTCTAC < 41bp 1 0.202222885078084 1 0.0609050095081329 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDS2 ENSG00000101290 CDS Human protein_coding chr20:5163068 chr20:5163049 synonymous SNV . 0 2 hm5C_associated_SNPs_14119 0 0 1 0 2 CDS2 chr20:5163033 3'AG 5163033 Downstream 17bp
chr20 5163049 5163049 1 + A G rs35796695 5163068 + 5163048 5163088 41 TACTGAGTCTGGTCAAGAAGCATTATCGACTGCAGTTCTAC TGCTGAGTCTGGTCAAGAAGCATTATCGACTGCAGTTCTAC < 41bp 1 0.202222885078084 1 0.0609050095081329 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDS2 ENSG00000101290 CDS Human protein_coding chr20:5163068 chr20:5163049 synonymous SNV . 0 2 hm5C_associated_SNPs_14119 0 0 1 0 2 CDS2 chr20:5163091 5'GT 5163091 Upstream 43bp
chr20 5931575 5931575 1 + G C rs191935419 5931590 + 5931570 5931610 41 GGGAGGGAGGGAGGGAGAATCCGGCCGGACAGATCTGCGCG GGGAGCGAGGGAGGGAGAATCCGGCCGGACAGATCTGCGCG < 41bp 1 0.683279674862705 1 0.778488993644714 experiment 0.633440650274589 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MCM8 ENSG00000125885 UTR5 Human protein_coding chr20:5931590 chr20:5931575 . . 0 6 hm5C_associated_SNPs_14124 0 0 1 0 1 MCM8 chr20:5931669 5'GT 5931669 Upstream 95bp
chr20 5931575 5931575 1 + G C rs191935419 5931595 + 5931575 5931615 41 GGAGGGAGGGAGAATCCGGCCGGACAGATCTGCGCGTATCC CGAGGGAGGGAGAATCCGGCCGGACAGATCTGCGCGTATCC < 41bp 1 0.384807043539794 1 0.48776850104332 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM8 ENSG00000125885 UTR5 Human protein_coding chr20:5931595 chr20:5931575 . . 0 1 hm5C_associated_SNPs_14125 0 0 1 0 1 MCM8 chr20:5931669 5'GT 5931669 Upstream 95bp
chr20 5931577 5931577 1 + A G rs117380724 5931590 + 5931570 5931610 41 GGGAGGGAGGGAGGGAGAATCCGGCCGGACAGATCTGCGCG GGGAGGGGGGGAGGGAGAATCCGGCCGGACAGATCTGCGCG < 41bp 1 0.734682822043 1 0.878186464309692 experiment 0.530634355914001 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MCM8 ENSG00000125885 UTR5 Human protein_coding chr20:5931590 chr20:5931577 . . 0 8 hm5C_associated_SNPs_14126 0 0 1 0 1 MCM8 chr20:5931669 5'GT 5931669 Upstream 93bp
chr20 5931577 5931577 1 + A G rs117380724 5931595 + 5931575 5931615 41 GGAGGGAGGGAGAATCCGGCCGGACAGATCTGCGCGTATCC GGGGGGAGGGAGAATCCGGCCGGACAGATCTGCGCGTATCC < 41bp 1 0.431200210286709 1 0.533194780349731 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM8 ENSG00000125885 UTR5 Human protein_coding chr20:5931595 chr20:5931577 . . 0 3 hm5C_associated_SNPs_14127 0 0 1 0 1 MCM8 chr20:5931669 5'GT 5931669 Upstream 93bp
chr20 5931604 5931604 1 + C G rs371133845 5931590 + 5931570 5931610 41 GGGAGGGAGGGAGGGAGAATCCGGCCGGACAGATCTGCGCG GGGAGGGAGGGAGGGAGAATCCGGCCGGACAGATGTGCGCG < 41bp 1 0.678389591481174 1 0.808542490005493 experiment 0.643220817037651 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MCM8 ENSG00000125885 UTR5 Human protein_coding chr20:5931590 chr20:5931604 . . 0 35 hm5C_associated_SNPs_14128 0 0 1 0 1 MCM8 chr20:5931669 5'GT 5931669 Upstream 66bp
chr20 5931604 5931604 1 + C G rs371133845 5931595 + 5931575 5931615 41 GGAGGGAGGGAGAATCCGGCCGGACAGATCTGCGCGTATCC GGAGGGAGGGAGAATCCGGCCGGACAGATGTGCGCGTATCC < 41bp 1 0.422362774782789 1 0.662009477615356 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM8 ENSG00000125885 UTR5 Human protein_coding chr20:5931595 chr20:5931604 . . 0 30 hm5C_associated_SNPs_14129 0 0 1 0 1 MCM8 chr20:5931669 5'GT 5931669 Upstream 66bp
chr20 5932795 5932795 1 + G A rs577098006 5932807 + 5932787 5932827 41 AACCACAGGAAAACGTACTTCTGGTAGGTGAGGTCAATGAT AACCACAGAAAAACGTACTTCTGGTAGGTGAGGTCAATGAT < 41bp 1 0.381454445781477 1 0.349663734436035 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM8 ENSG00000125885 CDS Human protein_coding chr20:5932807 chr20:5932795 nonsynonymous SNV 0.652 0 9 hm5C_associated_SNPs_14130 0 0 1 0 1 MCM8 chr20:5932809 5'GT 5932809 Upstream 15bp
chr20 17550808 17550808 1 + G T rs376638238 17550823 + 17550803 17550843 41 TCGCTGCCCGCCGGCTCCCTCCCCCGCGTCCCTGCGACCGC TCGCTTCCCGCCGGCTCCCTCCCCCGCGTCCCTGCGACCGC < 41bp 1 0.424629101986878 1 0.198182374238968 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DSTN ENSG00000125868 UTR5 Human protein_coding chr20:17550823 chr20:17550808 . . 0 6 hm5C_associated_SNPs_14143 0 0 1 0 1 DSTN chr20:17550856 5'GT 17550856 Upstream 49bp
chr20 17970587 17970587 1 + A G rs61749088 17970585 + 17970565 17970605 41 CCTGTGTTTCTTCCTAGGTTCAATGTGGCTTAATTGTGGTG CCTGTGTTTCTTCCTAGGTTCAGTGTGGCTTAATTGTGGTG < 41bp 1 0.454449230994193 1 0.493365675210953 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MGME1 ENSG00000125871 CDS Human protein_coding chr20:17970585 chr20:17970587 nonsynonymous SNV 0.989 1 23 hm5C_associated_SNPs_14144 0 0 1 0 1 MGME1 chr20:17970582 3'AG 17970582 Downstream 6bp
chr20 18143045 18143045 1 + G T rs73899803 18143056 + 18143036 18143076 41 AAGGCGATGGAGTCATAGACCCAGGGATGGAGTACGTCCCA AAGGCGATGTAGTCATAGACCCAGGGATGGAGTACGTCCCA < 41bp 1 0.704301664360263 1 0.807842612266541 experiment 0.591396671279474 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control KAT14 ENSG00000149474 CDS Human protein_coding chr20:18143056 chr20:18143045 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_14145 0 0 0 0 1 KAT14 chr20:18143021 3'AG 18143021 Downstream 25bp
chr20 18462413 18462413 1 + C T rs4814752 18462420 + 18462400 18462440 41 CAATCCAATCATCCCTCCCACAGGTTTGGTCCGGGCACCCT CAATCCAATCATCTCTCCCACAGGTTTGGTCCGGGCACCCT < 41bp 1 0.741280118108454 1 0.458251059055328 experiment 0.517439763783092 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLR3F ENSG00000132664 CDS Human protein_coding chr20:18462420 chr20:18462413 nonsynonymous SNV 0.976 1 14 hm5C_associated_SNPs_14146 0 0 1 0 1 POLR3F chr20:18462454 5'GT 18462454 Upstream 42bp
chr20 18462421 18462421 1 + A G rs1055171 18462420 + 18462400 18462440 41 CAATCCAATCATCCCTCCCACAGGTTTGGTCCGGGCACCCT CAATCCAATCATCCCTCCCACGGGTTTGGTCCGGGCACCCT < 41bp 1 0.789634865428863 1 0.773955404758453 experiment 0.420730269142274 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLR3F ENSG00000132664 CDS Human protein_coding chr20:18462420 chr20:18462421 synonymous SNV . 0 22 hm5C_associated_SNPs_14147 0 0 1 0 1 POLR3F chr20:18462454 5'GT 18462454 Upstream 34bp
chr20 18462421 18462421 1 + A G rs1055171 18462438 + 18462418 18462458 41 CACAGGTTTGGTCCGGGCACCCTGTGGACTCTGCCCGGTGA CACGGGTTTGGTCCGGGCACCCTGTGGACTCTGCCCGGTGA < 41bp 1 0.311992278702763 1 0.299031794071198 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLR3F ENSG00000132664 CDS Human protein_coding chr20:18462438 chr20:18462421 synonymous SNV . 0 4 hm5C_associated_SNPs_14148 0 0 1 0 1 POLR3F chr20:18462454 5'GT 18462454 Upstream 34bp
chr20 18462431 18462431 1 + C A rs200897283 18462420 + 18462400 18462440 41 CAATCCAATCATCCCTCCCACAGGTTTGGTCCGGGCACCCT CAATCCAATCATCCCTCCCACAGGTTTGGTCAGGGCACCCT < 41bp 1 0.756028301718122 1 0.459072381258011 experiment 0.487943396563757 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLR3F ENSG00000132664 CDS Human protein_coding chr20:18462420 chr20:18462431 synonymous SNV . 0 32 hm5C_associated_SNPs_14149 0 0 1 0 1 POLR3F chr20:18462454 5'GT 18462454 Upstream 24bp
chr20 18462431 18462431 1 + C A rs200897283 18462438 + 18462418 18462458 41 CACAGGTTTGGTCCGGGCACCCTGTGGACTCTGCCCGGTGA CACAGGTTTGGTCAGGGCACCCTGTGGACTCTGCCCGGTGA < 41bp 1 0.277874355316023 1 0.395755261182785 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLR3F ENSG00000132664 CDS Human protein_coding chr20:18462438 chr20:18462431 synonymous SNV . 0 14 hm5C_associated_SNPs_14150 0 0 1 0 1 POLR3F chr20:18462454 5'GT 18462454 Upstream 24bp
chr20 19937376 19937376 1 + C A rs202212179 19937385 + 19937365 19937405 41 CGGCTCCTCCACACCCACCCCATATGGCTGCAGCTGAGTCT CGGCTCCTCCAAACCCACCCCATATGGCTGCAGCTGAGTCT < 41bp 1 0.144907648509135 1 0.242052346467972 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIN2 ENSG00000132669 CDS Human protein_coding chr20:19937385 chr20:19937376 nonsynonymous SNV 0.966 3 12 hm5C_associated_SNPs_14155 0 0 0 0 1 RIN2 chr20:19937451 5'GT 19937451 Upstream 76bp
chr20 19981310 19981310 1 + C A rs114329888 19981314 + 19981294 19981334 41 GTTGCACAGGAAAGACCCTCCTTGTGAGACCTTACATCACC GTTGCACAGGAAAGACACTCCTTGTGAGACCTTACATCACC < 41bp 1 0.420342617856747 1 0.161668628454208 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIN2 ENSG00000132669 CDS Human protein_coding chr20:19981314 chr20:19981310 synonymous SNV . 0 17 hm5C_associated_SNPs_14158 0 0 0 0 1 RIN2 chr20:19981257 3'AG 19981257 Downstream 54bp
chr20 25187724 25187724 1 + G A rs45506395 25187712 + 25187692 25187732 41 CTCTCCCCCCTTCCCACCAGCAGCCGCAGCACGGTCCTTGG CTCTCCCCCCTTCCCACCAGCAGCCGCAGCACAGTCCTTGG < 41bp 1 0.352206762488969 1 0.416556596755981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25187712 chr20:25187724 nonsynonymous SNV 0.001 1 33 hm5C_associated_SNPs_14160 0 0 1 0 2 ENTPD6 chr20:25187712 3'AG 25187712 Downstream 13bp
chr20 25187724 25187724 1 + G A rs45506395 25187712 + 25187692 25187732 41 CTCTCCCCCCTTCCCACCAGCAGCCGCAGCACGGTCCTTGG CTCTCCCCCCTTCCCACCAGCAGCCGCAGCACAGTCCTTGG < 41bp 1 0.352206762488969 1 0.416556596755981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25187712 chr20:25187724 nonsynonymous SNV 0.001 1 33 hm5C_associated_SNPs_14160 0 0 1 0 2 ENTPD6 chr20:25187715 3'AG 25187715 Downstream 10bp
chr20 25198140 25198140 1 + C T rs145966134 25198155 + 25198135 25198175 41 CAGGGCACCCTGCAGGCCTCCCCACCCGGCTACCTGACGGC CAGGGTACCCTGCAGGCCTCCCCACCCGGCTACCTGACGGC < 41bp 1 0.124841955883458 1 0.0970736145973206 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25198155 chr20:25198140 synonymous SNV . 0 6 hm5C_associated_SNPs_14161 0 0 1 0 2 ENTPD6 chr20:25198138 3'AG 25198138 Downstream 3bp
chr20 25198140 25198140 1 + C T rs145966134 25198155 + 25198135 25198175 41 CAGGGCACCCTGCAGGCCTCCCCACCCGGCTACCTGACGGC CAGGGTACCCTGCAGGCCTCCCCACCCGGCTACCTGACGGC < 41bp 1 0.124841955883458 1 0.0970736145973206 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25198155 chr20:25198140 synonymous SNV . 0 6 hm5C_associated_SNPs_14161 0 0 1 0 2 ENTPD6 chr20:25198217 5'GT 25198217 Upstream 78bp
chr20 25205881 25205881 1 + C T rs73339100 25205875 + 25205855 25205895 41 GAGACACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT GAGACACAGCCGCAGAGCAGCCCCTTTTCATGCATGGACCT < 41bp 1 0.218930646886947 1 0.0372201502323151 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25205875 chr20:25205881 nonsynonymous SNV 0.000 0 27 hm5C_associated_SNPs_14164 0 0 0 0 3 ENTPD6 chr20:25205798 3'AG 25205798 Downstream 84bp
chr20 25205881 25205881 1 + C T rs73339100 25205875 + 25205855 25205895 41 GAGACACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT GAGACACAGCCGCAGAGCAGCCCCTTTTCATGCATGGACCT < 41bp 1 0.218930646886947 1 0.0372201502323151 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25205875 chr20:25205881 nonsynonymous SNV 0.000 0 27 hm5C_associated_SNPs_14164 0 0 0 0 3 ENTPD6 chr20:25205841 3'AG 25205841 Downstream 41bp
chr20 25205881 25205881 1 + C T rs73339100 25205875 + 25205855 25205895 41 GAGACACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT GAGACACAGCCGCAGAGCAGCCCCTTTTCATGCATGGACCT < 41bp 1 0.218930646886947 1 0.0372201502323151 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25205875 chr20:25205881 nonsynonymous SNV 0.000 0 27 hm5C_associated_SNPs_14164 0 0 0 0 3 ENTPD6 chr20:25205953 5'GT 25205953 Upstream 73bp
chr20 30381758 30381758 1 + G A rs1062794 30381750 + 30381730 30381770 41 CAAGAACTGTGGAAATATGCCCTTTCTCGTTTGATTCTCGA CAAGAACTGTGGAAATATGCCCTTTCTCATTTGATTCTCGA < 41bp 1 0.022155131712374 1 0.0439035594463348 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30381750 chr20:30381758 synonymous SNV . 0 29 hm5C_associated_SNPs_14171 0 0 1 0 1 TPX2 chr20:30381827 5'GT 30381827 Upstream 70bp
chr20 30381758 30381758 1 + G A rs1062794 30381751 + 30381731 30381771 41 AAGAACTGTGGAAATATGCCCTTTCTCGTTTGATTCTCGAG AAGAACTGTGGAAATATGCCCTTTCTCATTTGATTCTCGAG < 41bp 1 0.0253673106796956 1 0.0514507293701172 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30381751 chr20:30381758 synonymous SNV . 0 28 hm5C_associated_SNPs_14172 0 0 1 0 1 TPX2 chr20:30381827 5'GT 30381827 Upstream 70bp
chr20 30526984 30526984 1 + C T rs201611906 30526975 + 30526955 30526995 41 AGGGAGAAGCGAGTCGGGGGCTTTGACCTCATGTGGAATGA AGGGAGAAGCGAGTCGGGGGCTTTGACCTTATGTGGAATGA < 41bp 1 0.186177691876164 1 0.0786328315734863 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30526975 chr20:30526984 synonymous SNV . 0 30 hm5C_associated_SNPs_14177 0 0 0 0 1 TTLL9 chr20:30526945 3'AG 30526945 Downstream 40bp
chr20 31374350 31374350 1 + C T rs559899499 31374361 + 31374341 31374381 41 CGGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCG CGGGAGAGGTACAGGCCTTCCCCACGTTCCACCCGAGGCCG < 41bp 1 0.360102865413138 1 0.498719871044159 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374361 chr20:31374350 nonsynonymous SNV 0.678 1 10 hm5C_associated_SNPs_14187 0 0 0 0 1 DNMT3B chr20:31374308 3'AG 31374308 Downstream 43bp
chr20 31374350 31374350 1 + C T rs559899499 31374362 + 31374342 31374382 41 GGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCGG GGGAGAGGTACAGGCCTTCCCCACGTTCCACCCGAGGCCGG < 41bp 1 0.644792484650864 1 0.508125364780426 experiment 0.710415030698271 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374362 chr20:31374350 nonsynonymous SNV 0.678 1 9 hm5C_associated_SNPs_14188 0 0 0 0 1 DNMT3B chr20:31374308 3'AG 31374308 Downstream 43bp
chr20 34079058 34079058 1 + G T rs145916875 34079073 + 34079053 34079093 41 GAGAAGGAGAGAGTATCCCTCCTGGAGACACTGCTGCAGAC GAGAATGAGAGAGTATCCCTCCTGGAGACACTGCTGCAGAC < 41bp 1 0.182054545051612 1 0.736310124397278 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP250 ENSG00000126001 CDS Human protein_coding chr20:34079073 chr20:34079058 nonsynonymous SNV 0.999 1 6 hm5C_associated_SNPs_14191 0 0 1 0 1 CEP250 chr20:34079038 3'AG 34079038 Downstream 21bp
chr20 34817343 34817343 1 + C T rs200564466 34817342 + 34817322 34817362 41 GGGCCTTCATTCTGGATTCTCCGACGCAACACTGACGTCCC GGGCCTTCATTCTGGATTCTCTGACGCAACACTGACGTCCC < 41bp 1 0.357451405114998 1 0.654270887374878 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPB41L1 ENSG00000088367 UTR3 Human protein_coding chr20:34817342 chr20:34817343 . . 0 22 hm5C_associated_SNPs_14197 0 0 1 0 1 EPB41L1 chr20:34817254 3'AG 34817254 Downstream 90bp
chr20 37144944 37144944 1 + C T rs556665696 37144939 + 37144919 37144959 41 GCAAGAATTGAATCAGTATCCCTGCCTTAAACATCTGCCTC GCAAGAATTGAATCAGTATCCCTGCTTTAAACATCTGCCTC < 41bp 1 0.175322819182005 1 0.254383504390717 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37144939 chr20:37144944 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_14212 0 0 1 0 1 RALGAPB chr20:37145013 5'GT 37145013 Upstream 70bp
chr20 37570725 37570725 1 + C T rs3752293 37570736 + 37570716 37570756 41 TCTCAATTTCTGGATATGTGCATGGATCTGAAAGTTCATCC TCTCAATTTTTGGATATGTGCATGGATCTGAAAGTTCATCC < 41bp 1 0.441508885795532 1 0.0714190006256104 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM83D ENSG00000101447 CDS Human protein_coding chr20:37570736 chr20:37570725 synonymous SNV . 0 10 hm5C_associated_SNPs_14213 0 0 1 0 1 FAM83D chr20:37570769 5'GT 37570769 Upstream 45bp
chr20 37632424 37632424 1 + C T rs140757763 37632421 + 37632401 37632441 41 GAAACTGTTGTGTCGATGCTCATCGAGCAGGCTCGAGCACT GAAACTGTTGTGTCGATGCTCATTGAGCAGGCTCGAGCACT < 41bp 1 0.174148464623581 1 0.0164184868335724 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX35 ENSG00000101452 CDS Human protein_coding chr20:37632421 chr20:37632424 synonymous SNV . 0 24 hm5C_associated_SNPs_14215 0 0 1 0 1 DHX35 chr20:37632392 3'AG 37632392 Downstream 33bp
chr20 39797465 39797465 1 + T C rs753381 39797451 + 39797431 39797471 41 TACAAGGCCCAGAGGGAGGACGAGCTGACCTTCATCAAGAG TACAAGGCCCAGAGGGAGGACGAGCTGACCTTCACCAAGAG < 41bp 1 0.292445570560238 1 0.685719966888428 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39797451 chr20:39797465 nonsynonymous SNV 0.998 0 35 hm5C_associated_SNPs_14216 0 1 1 0 1 PLCG1 chr20:39797510 5'GT 39797510 Upstream 46bp
chr20 39798794 39798794 1 + C A rs560952244 39798792 + 39798772 39798812 41 AACAACCGGCTCTTCGTCTTCTCCATCAGCATGGCGTCGGT AACAACCGGCTCTTCGTCTTCTACATCAGCATGGCGTCGGT < 41bp 1 0.753829446456009 1 0.872640132904053 experiment 0.492341107087981 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39798792 chr20:39798794 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_14217 0 0 1 0 1 PLCG1 chr20:39798752 3'AG 39798752 Downstream 43bp
chr20 39802814 39802814 1 + G T rs33917926 39802812 + 39802792 39802832 41 GTGGTACGTCCCTGCGGGAGCGGGGCTCAGATGCCTCAGGC GTGGTACGTCCCTGCGGGAGCGTGGCTCAGATGCCTCAGGC < 41bp 1 0.582771274310048 1 0.574688017368317 experiment 0.834457451379904 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39802812 chr20:39802814 synonymous SNV . 0 23 hm5C_associated_SNPs_14218 0 0 1 0 2 PLCG1 chr20:39802764 3'AG 39802764 Downstream 51bp
chr20 39802814 39802814 1 + G T rs33917926 39802812 + 39802792 39802832 41 GTGGTACGTCCCTGCGGGAGCGGGGCTCAGATGCCTCAGGC GTGGTACGTCCCTGCGGGAGCGTGGCTCAGATGCCTCAGGC < 41bp 1 0.582771274310048 1 0.574688017368317 experiment 0.834457451379904 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39802812 chr20:39802814 synonymous SNV . 0 23 hm5C_associated_SNPs_14218 0 0 1 0 2 PLCG1 chr20:39802767 3'AG 39802767 Downstream 48bp
chr20 39977786 39977786 1 + G A rs75791892 39977802 + 39977782 39977822 41 ACTCGGATGGCGAGTGGCCCCCCCAGGCCAGGTAAGAGTCC ACTCAGATGGCGAGTGGCCCCCCCAGGCCAGGTAAGAGTCC < 41bp 1 0.55776631560111 1 0.430325567722321 experiment 0.884467368797779 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39977802 chr20:39977786 synonymous SNV . 0 5 hm5C_associated_SNPs_14219 0 0 1 0 3 LPIN3 chr20:39977729 3'AG 39977729 Downstream 58bp
chr20 39977786 39977786 1 + G A rs75791892 39977802 + 39977782 39977822 41 ACTCGGATGGCGAGTGGCCCCCCCAGGCCAGGTAAGAGTCC ACTCAGATGGCGAGTGGCCCCCCCAGGCCAGGTAAGAGTCC < 41bp 1 0.55776631560111 1 0.430325567722321 experiment 0.884467368797779 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39977802 chr20:39977786 synonymous SNV . 0 5 hm5C_associated_SNPs_14219 0 0 1 0 3 LPIN3 chr20:39977732 3'AG 39977732 Downstream 55bp
chr20 39977786 39977786 1 + G A rs75791892 39977802 + 39977782 39977822 41 ACTCGGATGGCGAGTGGCCCCCCCAGGCCAGGTAAGAGTCC ACTCAGATGGCGAGTGGCCCCCCCAGGCCAGGTAAGAGTCC < 41bp 1 0.55776631560111 1 0.430325567722321 experiment 0.884467368797779 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39977802 chr20:39977786 synonymous SNV . 0 5 hm5C_associated_SNPs_14219 0 0 1 0 3 LPIN3 chr20:39977812 5'GT 39977812 Upstream 27bp
chr20 42169589 42169589 1 + G A rs76363655 42169585 + 42169565 42169605 41 CCCCACCAGGCAAGAATAGTCAGAGTGACCCATGTATCTGG CCCCACCAGGCAAGAATAGTCAGAATGACCCATGTATCTGG < 41bp 1 0.788243367605842 1 0.867765724658966 experiment 0.423513264788316 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control L3MBTL1 ENSG00000185513 CDS Human protein_coding chr20:42169585 chr20:42169589 nonsynonymous SNV 0.191 1 25 hm5C_associated_SNPs_14221 0 0 1 0 1 L3MBTL1 chr20:42169574 3'AG 42169574 Downstream 16bp
chr20 42343777 42343777 1 + A G rs191418662 42343775 + 42343755 42343795 41 GACTTGGTTTTGGTTTCAGCCGACAACTGCCCCTTCAAACT GACTTGGTTTTGGTTTCAGCCGGCAACTGCCCCTTCAAACT < 41bp 1 0.699735887234625 1 0.89864718914032 experiment 0.60052822553075 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42343775 chr20:42343777 nonsynonymous SNV 0.013 0 23 hm5C_associated_SNPs_14222 0 0 1 0 1 MYBL2 chr20:42343774 3'AG 42343774 Downstream 4bp
chr20 42695404 42695404 1 + C T rs149010935 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCCCCAGCAGCTTGGGATCCTGCTCACCTGGCCCATCCAA < 41bp 1 0.426803837030596 1 0.136575073003769 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695404 nonsynonymous SNV 0.573 0 14 hm5C_associated_SNPs_14224 0 0 1 0 2 TOX2 chr20:42695370 3'AG 42695370 Downstream 35bp
chr20 42695404 42695404 1 + C T rs149010935 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCCCCAGCAGCTTGGGATCCTGCTCACCTGGCCCATCCAA < 41bp 1 0.426803837030596 1 0.136575073003769 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695404 nonsynonymous SNV 0.573 0 14 hm5C_associated_SNPs_14224 0 0 1 0 2 TOX2 chr20:42695497 5'GT 42695497 Upstream 94bp
chr20 43343997 43343997 1 + C T rs185897223 43344003 + 43343983 43344023 41 AAGACTCACAGGTCCGCCTCCCAGGCTCAAAGCTGGCTCTG AAGACTCACAGGTCTGCCTCCCAGGCTCAAAGCTGGCTCTG < 41bp 1 0.388275509211545 1 0.74122941493988 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KCNK15-AS1 ENSG00000244558 ncRNA_intronic Human protein_coding chr20:43344003 chr20:43343997 . . 0 15 hm5C_associated_SNPs_14226 0 0 0 0 1 WISP2 chr20:43344091 5'GT 43344091 Upstream 95bp
chr20 43530403 43530403 1 + A C rs142757633 43530409 + 43530389 43530429 41 AGAGGAATGAGAAGAAGCAGCAGATGGGCAAAGAGTACCGT AGAGGAATGAGAAGCAGCAGCAGATGGGCAAAGAGTACCGT < 41bp 1 0.628504413326908 1 0.637706577777863 experiment 0.742991173346185 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout YWHAB ENSG00000166913 CDS Human protein_coding chr20:43530409 chr20:43530403 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_14228 0 0 1 0 1 YWHAB chr20:43530474 5'GT 43530474 Upstream 72bp
chr20 43535101 43535101 1 + T C rs6876 43535105 + 43535085 43535125 41 CTCGTGCTTTGTGATCTGTTCAGTGTCACTCTGTACCCTCA CTCGTGCTTTGTGATCCGTTCAGTGTCACTCTGTACCCTCA < 41bp 1 0.493354321020426 1 0.340348154306412 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control YWHAB ENSG00000166913 UTR3 Human protein_coding chr20:43535105 chr20:43535101 . . 0 17 hm5C_associated_SNPs_14229 0 0 1 1 1 YWHAB chr20:43535023 3'AG 43535023 Downstream 79bp
chr20 44035237 44035237 1 + G A rs541042573 44035253 + 44035233 44035273 41 TCCCGGCTCCCAGGGCCCGTCGGTCCCCCGGGAGCCCTGGA TCCCAGCTCCCAGGGCCCGTCGGTCCCCCGGGAGCCCTGGA < 41bp 1 0.340977724236444 1 0.845628023147583 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DBNDD2 ENSG00000244274 CDS Human protein_coding chr20:44035253 chr20:44035237 nonsynonymous SNV 1.000 0 5 hm5C_associated_SNPs_14230 0 0 1 0 1 DBNDD2 chr20:44035250 5'GT 44035250 Upstream 14bp
chr20 44050050 44050050 1 + C T rs146896700 44050042 + 44050022 44050062 41 GAGGCCCCCCCAGTGCCCTTCCTGCATGCCCAGCGGTACGT GAGGCCCCCCCAGTGCCCTTCCTGCATGTCCAGCGGTACGT < 41bp 1 0.121685914047061 1 0.0529753267765045 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44050042 chr20:44050050 nonsynonymous SNV 0.990 3 29 hm5C_associated_SNPs_14231 0 0 1 1 1 PIGT chr20:44050023 3'AG 44050023 Downstream 28bp
chr20 44050061 44050061 1 + G A rs370184382 44050042 + 44050022 44050062 41 GAGGCCCCCCCAGTGCCCTTCCTGCATGCCCAGCGGTACGT GAGGCCCCCCCAGTGCCCTTCCTGCATGCCCAGCGGTACAT < 41bp 1 0.131362828726227 1 0.0526649653911591 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44050042 chr20:44050061 nonsynonymous SNV 0.949 4 40 hm5C_associated_SNPs_14232 0 0 1 1 1 PIGT chr20:44050023 3'AG 44050023 Downstream 39bp
chr20 47641909 47641909 1 + C T rs573838411 47641892 + 47641872 47641912 41 TCCACATAGAGACGGAGGATCAGGGCATGTATAAGTACATG TCCACATAGAGACGGAGGATCAGGGCATGTATAAGTATATG < 41bp 1 0.542164675984585 1 0.80017763376236 experiment 0.915670648030829 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47641892 chr20:47641909 synonymous SNV . 0 38 hm5C_associated_SNPs_14257 0 0 0 0 1 ARFGEF2 chr20:47641850 3'AG 47641850 Downstream 60bp
chr20 47859217 47859217 1 + G A rs1130146 47859198 + 47859178 47859218 41 ACCAACACAAGCAAGAAGGCCCTGAAACAGTATCGAGCTGG ACCAACACAAGCAAGAAGGCCCTGAAACAGTATCGAGCTAG < 41bp 1 0.219860576150056 1 0.220712780952454 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX27 ENSG00000124228 CDS Human protein_coding chr20:47859198 chr20:47859217 nonsynonymous SNV 0.999 2 40 hm5C_associated_SNPs_14258 0 0 0 0 2 DDX27 chr20:47859131 3'AG 47859131 Downstream 87bp
chr20 47859217 47859217 1 + G A rs1130146 47859198 + 47859178 47859218 41 ACCAACACAAGCAAGAAGGCCCTGAAACAGTATCGAGCTGG ACCAACACAAGCAAGAAGGCCCTGAAACAGTATCGAGCTAG < 41bp 1 0.219860576150056 1 0.220712780952454 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX27 ENSG00000124228 CDS Human protein_coding chr20:47859198 chr20:47859217 nonsynonymous SNV 0.999 2 40 hm5C_associated_SNPs_14258 0 0 0 0 2 DDX27 chr20:47859218 5'GT 47859218 Upstream 2bp
chr20 47895196 47895196 1 + C T rs188154930 47895210 + 47895190 47895230 41 GCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG GCGGTGTCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG < 41bp 1 0.0604302826652249 1 0.0891728699207306 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZFAS1 ENSG00000177410 ncRNA_exonic Human antisense chr20:47895210 chr20:47895196 . . 0 7 hm5C_associated_SNPs_14259 0 0 1 0 2 ZFAS1 chr20:47895253 5'GT 47895253 Upstream 58bp
chr20 47895196 47895196 1 + C T rs188154930 47895210 + 47895190 47895230 41 GCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG GCGGTGTCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG < 41bp 1 0.0604302826652249 1 0.0891728699207306 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZFAS1 ENSG00000177410 ncRNA_exonic Human antisense chr20:47895210 chr20:47895196 . . 0 7 hm5C_associated_SNPs_14259 0 0 1 0 2 ZFAS1 chr20:47895275 5'GT 47895275 Upstream 80bp
chr20 47895197 47895197 1 + C A rs479474 47895210 + 47895190 47895230 41 GCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG GCGGTGCACGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG < 41bp 1 0.0737985630845806 1 0.0692265927791595 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZFAS1 ENSG00000177410 ncRNA_exonic Human antisense chr20:47895210 chr20:47895197 . . 0 8 hm5C_associated_SNPs_14260 0 0 1 0 2 ZFAS1 chr20:47895253 5'GT 47895253 Upstream 57bp
chr20 47895197 47895197 1 + C A rs479474 47895210 + 47895190 47895230 41 GCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG GCGGTGCACGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG < 41bp 1 0.0737985630845806 1 0.0692265927791595 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZFAS1 ENSG00000177410 ncRNA_exonic Human antisense chr20:47895210 chr20:47895197 . . 0 8 hm5C_associated_SNPs_14260 0 0 1 0 2 ZFAS1 chr20:47895275 5'GT 47895275 Upstream 79bp
chr20 47895198 47895198 1 + C G rs479473 47895210 + 47895190 47895230 41 GCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG GCGGTGCCGGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG < 41bp 1 0.0795183926062815 1 0.0940778851509094 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZFAS1 ENSG00000177410 ncRNA_exonic Human antisense chr20:47895210 chr20:47895198 . . 0 9 hm5C_associated_SNPs_14261 0 0 1 0 2 ZFAS1 chr20:47895253 5'GT 47895253 Upstream 56bp
chr20 47895198 47895198 1 + C G rs479473 47895210 + 47895190 47895230 41 GCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG GCGGTGCCGGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG < 41bp 1 0.0795183926062815 1 0.0940778851509094 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZFAS1 ENSG00000177410 ncRNA_exonic Human antisense chr20:47895210 chr20:47895198 . . 0 9 hm5C_associated_SNPs_14261 0 0 1 0 2 ZFAS1 chr20:47895275 5'GT 47895275 Upstream 78bp
chr20 47895201 47895201 1 + A G rs28362648 47895210 + 47895190 47895230 41 GCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG GCGGTGCCCGGGGTGTGGTACTTCTCCTAGTTGCAGTCAGG < 41bp 1 0.0770312137606593 1 0.122182220220566 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZFAS1 ENSG00000177410 ncRNA_exonic Human antisense chr20:47895210 chr20:47895201 . . 0 12 hm5C_associated_SNPs_14262 0 0 1 0 2 ZFAS1 chr20:47895253 5'GT 47895253 Upstream 53bp
chr20 47895201 47895201 1 + A G rs28362648 47895210 + 47895190 47895230 41 GCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG GCGGTGCCCGGGGTGTGGTACTTCTCCTAGTTGCAGTCAGG < 41bp 1 0.0770312137606593 1 0.122182220220566 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZFAS1 ENSG00000177410 ncRNA_exonic Human antisense chr20:47895210 chr20:47895201 . . 0 12 hm5C_associated_SNPs_14262 0 0 1 0 2 ZFAS1 chr20:47895275 5'GT 47895275 Upstream 75bp
chr20 47895215 47895215 1 + C A rs3818070 47895210 + 47895190 47895230 41 GCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG GCGGTGCCCGGAGTGTGGTACTTCTACTAGTTGCAGTCAGG < 41bp 1 0.0747391348362042 1 0.0978684723377228 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZFAS1 ENSG00000177410 ncRNA_exonic Human antisense chr20:47895210 chr20:47895215 . . 0 26 hm5C_associated_SNPs_14263 0 0 1 0 2 ZFAS1 chr20:47895253 5'GT 47895253 Upstream 39bp
chr20 47895215 47895215 1 + C A rs3818070 47895210 + 47895190 47895230 41 GCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG GCGGTGCCCGGAGTGTGGTACTTCTACTAGTTGCAGTCAGG < 41bp 1 0.0747391348362042 1 0.0978684723377228 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZFAS1 ENSG00000177410 ncRNA_exonic Human antisense chr20:47895210 chr20:47895215 . . 0 26 hm5C_associated_SNPs_14263 0 0 1 0 2 ZFAS1 chr20:47895275 5'GT 47895275 Upstream 61bp
chr20 47895218 47895218 1 + A C rs3818071 47895210 + 47895190 47895230 41 GCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG GCGGTGCCCGGAGTGTGGTACTTCTCCTCGTTGCAGTCAGG < 41bp 1 0.0692823526746268 1 0.116660267114639 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZFAS1 ENSG00000177410 ncRNA_exonic Human antisense chr20:47895210 chr20:47895218 . . 0 29 hm5C_associated_SNPs_14264 0 0 1 0 2 ZFAS1 chr20:47895253 5'GT 47895253 Upstream 36bp
chr20 47895218 47895218 1 + A C rs3818071 47895210 + 47895190 47895230 41 GCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG GCGGTGCCCGGAGTGTGGTACTTCTCCTCGTTGCAGTCAGG < 41bp 1 0.0692823526746268 1 0.116660267114639 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZFAS1 ENSG00000177410 ncRNA_exonic Human antisense chr20:47895210 chr20:47895218 . . 0 29 hm5C_associated_SNPs_14264 0 0 1 0 2 ZFAS1 chr20:47895275 5'GT 47895275 Upstream 58bp
chr20 55088404 55088404 1 + A G rs1059768 55088403 + 55088383 55088423 41 TTCCAGGAGGATGATGTCATCATGCTCAATGGCACCAAGGA TTCCAGGAGGATGATGTCATCGTGCTCAATGGCACCAAGGA < 41bp 1 0.525109639936458 1 0.695362329483032 experiment 0.949780720127083 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55088403 chr20:55088404 nonsynonymous SNV 0.988 0 22 hm5C_associated_SNPs_14273 0 1 1 0 1 RTFDC1 chr20:55088484 5'GT 55088484 Upstream 81bp
chr20 56884985 56884985 1 + C T rs544929556 56885003 + 56884983 56885023 41 CCCTTCTCAACTTAGGGCGGCGGCGGGCCCGCGCCCCTGGC CCTTTCTCAACTTAGGGCGGCGGCGGGCCCGCGCCCCTGGC < 41bp 1 0.721479396807922 1 0.769016325473785 experiment 0.557041206384156 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RAB22A ENSG00000124209 UTR5 Human protein_coding chr20:56885003 chr20:56884985 . . 0 3 hm5C_associated_SNPs_14279 0 0 1 0 1 RAB22A chr20:56885068 5'GT 56885068 Upstream 84bp
chr20 57289017 57289017 1 + C T rs35104993 57289032 + 57289012 57289052 41 AACAGCGCTGAGTGGGAGGCCGCCTGTGTGAAGGCGGGCAG AACAGTGCTGAGTGGGAGGCCGCCTGTGTGAAGGCGGGCAG < 41bp 1 0.780465292187835 1 0.695706427097321 experiment 0.439069415624329 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57289032 chr20:57289017 synonymous SNV . 0 6 hm5C_associated_SNPs_14283 0 0 1 0 1 NPEPL1 chr20:57288973 3'AG 57288973 Downstream 45bp
chr20 57289645 57289645 1 + T C rs116074533 57289631 + 57289611 57289651 41 CCTAGGACCGAGACAACAGCCCCAGCTCCTGTGCTGGCCTC CCTAGGACCGAGACAACAGCCCCAGCTCCTGTGCCGGCCTC < 41bp 1 0.429884381749543 1 0.308743000030518 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57289631 chr20:57289645 synonymous SNV . 0 35 hm5C_associated_SNPs_14284 0 0 1 0 2 NPEPL1 chr20:57289616 3'AG 57289616 Downstream 30bp
chr20 57289645 57289645 1 + T C rs116074533 57289631 + 57289611 57289651 41 CCTAGGACCGAGACAACAGCCCCAGCTCCTGTGCTGGCCTC CCTAGGACCGAGACAACAGCCCCAGCTCCTGTGCCGGCCTC < 41bp 1 0.429884381749543 1 0.308743000030518 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57289631 chr20:57289645 synonymous SNV . 0 35 hm5C_associated_SNPs_14284 0 0 1 0 2 NPEPL1 chr20:57289726 5'GT 57289726 Upstream 82bp
chr20 57478807 57478807 1 + C G rs7121 57478822 + 57478802 57478842 41 TACATCCTGAGTGTGATGAACGTGCCTGACTTTGACTTCCC TACATGCTGAGTGTGATGAACGTGCCTGACTTTGACTTCCC < 41bp 1 0.260657050665942 1 0.0425751805305481 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57478822 chr20:57478807 nonsynonymous SNV 0.972 4 6 hm5C_associated_SNPs_14287 0 0 1 0 2 GNAS chr20:57478727 3'AG 57478727 Downstream 81bp
chr20 57478807 57478807 1 + C G rs7121 57478822 + 57478802 57478842 41 TACATCCTGAGTGTGATGAACGTGCCTGACTTTGACTTCCC TACATGCTGAGTGTGATGAACGTGCCTGACTTTGACTTCCC < 41bp 1 0.260657050665942 1 0.0425751805305481 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57478822 chr20:57478807 nonsynonymous SNV 0.972 4 6 hm5C_associated_SNPs_14287 0 0 1 0 2 GNAS chr20:57478846 5'GT 57478846 Upstream 40bp
chr20 57478846 57478846 1 + C G rs11554266 57478840 + 57478820 57478860 41 AACGTGCCTGACTTTGACTTCCCTCCCGTAAGCTACACCCC AACGTGCCTGACTTTGACTTCCCTCCGGTAAGCTACACCCC < 41bp 1 0.0636804459536286 1 0.0748854577541351 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57478840 chr20:57478846 synonymous SNV . 0 27 hm5C_associated_SNPs_14288 0 0 1 2 1 GNAS chr20:57478846 5'GT 57478846 Upstream 1bp
chr20 60881309 60881309 1 + C T rs535044424 60881329 + 60881309 60881349 41 CAACCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCA TAACCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCA < 41bp 1 0.244589313394031 1 0.456413567066193 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60881329 chr20:60881309 synonymous SNV . 0 1 hm5C_associated_SNPs_14302 0 0 1 0 2 ADRM1 chr20:60881253 3'AG 60881253 Downstream 57bp
chr20 60881309 60881309 1 + C T rs535044424 60881329 + 60881309 60881349 41 CAACCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCA TAACCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCA < 41bp 1 0.244589313394031 1 0.456413567066193 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60881329 chr20:60881309 synonymous SNV . 0 1 hm5C_associated_SNPs_14302 0 0 1 0 2 ADRM1 chr20:60881376 5'GT 60881376 Upstream 68bp
chr20 60881330 60881330 1 + G A rs2427273 60881329 + 60881309 60881349 41 CAACCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCA CAACCCCCCGATGCCTGGGGCACTGGGGGCCAGCGGAAGCA < 41bp 1 0.199967220711115 1 0.230730146169662 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60881329 chr20:60881330 synonymous SNV . 0 22 hm5C_associated_SNPs_14303 0 0 1 0 2 ADRM1 chr20:60881253 3'AG 60881253 Downstream 78bp
chr20 60881330 60881330 1 + G A rs2427273 60881329 + 60881309 60881349 41 CAACCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCA CAACCCCCCGATGCCTGGGGCACTGGGGGCCAGCGGAAGCA < 41bp 1 0.199967220711115 1 0.230730146169662 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60881329 chr20:60881330 synonymous SNV . 0 22 hm5C_associated_SNPs_14303 0 0 1 0 2 ADRM1 chr20:60881376 5'GT 60881376 Upstream 47bp
chr20 60882667 60882667 1 + G A rs36021300 60882662 + 60882642 60882682 41 CTCTTCGCAGCTCCCGGAGCCAGTCGGCAGCGGTCACCCCG CTCTTCGCAGCTCCCGGAGCCAGTCAGCAGCGGTCACCCCG < 41bp 1 0.256418460769739 1 0.303906500339508 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882662 chr20:60882667 synonymous SNV . 0 26 hm5C_associated_SNPs_14304 0 0 1 0 1 ADRM1 chr20:60882652 3'AG 60882652 Downstream 16bp
chr20 60882747 60882747 1 + C A rs79836754 60882762 + 60882742 60882782 41 AGCAACTAGCCCGAGCCCCGCGCCCAGTTCCGGGAATGGAG AGCAAATAGCCCGAGCCCCGCGCCCAGTTCCGGGAATGGAG < 41bp 1 0.32885290905957 1 0.376682996749878 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882762 chr20:60882747 nonsynonymous SNV 0.071 1 6 hm5C_associated_SNPs_14305 0 0 1 0 1 ADRM1 chr20:60882652 3'AG 60882652 Downstream 96bp
chr20 60882747 60882747 1 + C A rs79836754 60882764 + 60882744 60882784 41 CAACTAGCCCGAGCCCCGCGCCCAGTTCCGGGAATGGAGCC CAAATAGCCCGAGCCCCGCGCCCAGTTCCGGGAATGGAGCC < 41bp 1 0.241374391945776 1 0.467606961727142 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882764 chr20:60882747 nonsynonymous SNV 0.071 1 4 hm5C_associated_SNPs_14306 0 0 1 0 1 ADRM1 chr20:60882652 3'AG 60882652 Downstream 96bp
chr20 60962188 60962188 1 + A G rs192374410 60962176 + 60962156 60962196 41 CTTCCTTTCTCTCTCGCGCGCGGTGTGGTGGCAGCAGGTGT CTTCCTTTCTCTCTCGCGCGCGGTGTGGTGGCGGCAGGTGT < 41bp 1 0.646723048112905 1 0.583650350570679 experiment 0.706553903774189 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS21 ENSG00000171858 UTR5 Human protein_coding chr20:60962176 chr20:60962188 . . 0 33 hm5C_associated_SNPs_14310 0 0 1 0 1 RPS21 chr20:60962192 5'GT 60962192 Upstream 5bp
chr20 60963542 60963542 1 + T G rs114402901 60963554 + 60963534 60963574 41 CACAGATGTGGAATATTTGTCATAAATAAATAATGAAAACC CACAGATGGGGAATATTTGTCATAAATAAATAATGAAAACC < 41bp 1 0.519018559962811 1 0.306372821331024 experiment 0.961962880074378 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS21 ENSG00000171858 UTR3 Human protein_coding chr20:60963554 chr20:60963542 . . 0 9 hm5C_associated_SNPs_14311 0 0 1 2 1 RPS21 chr20:60963513 3'AG 60963513 Downstream 30bp
chr20 61449905 61449905 1 + G A rs567371176 61449900 + 61449880 61449920 41 GTCCTCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGC GTCCTCCAGGTCTGCCTGGGCCCCCAGTGAGTGTCCCTGGC < 41bp 1 0.0973939315307702 1 0.0901413559913635 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449900 chr20:61449905 synonymous SNV . 0 26 hm5C_associated_SNPs_14314 0 0 1 0 2 COL9A3 chr20:61449870 3'AG 61449870 Downstream 36bp
chr20 61449905 61449905 1 + G A rs567371176 61449900 + 61449880 61449920 41 GTCCTCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGC GTCCTCCAGGTCTGCCTGGGCCCCCAGTGAGTGTCCCTGGC < 41bp 1 0.0973939315307702 1 0.0901413559913635 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449900 chr20:61449905 synonymous SNV . 0 26 hm5C_associated_SNPs_14314 0 0 1 0 2 COL9A3 chr20:61449905 5'GT 61449905 Upstream 1bp
chr20 61449905 61449905 1 + G A rs567371176 61449901 + 61449881 61449921 41 TCCTCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCT TCCTCCAGGTCTGCCTGGGCCCCCAGTGAGTGTCCCTGGCT < 41bp 1 0.375975521530644 1 0.368972808122635 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449901 chr20:61449905 synonymous SNV . 0 25 hm5C_associated_SNPs_14315 0 0 1 0 2 COL9A3 chr20:61449870 3'AG 61449870 Downstream 36bp
chr20 61449905 61449905 1 + G A rs567371176 61449901 + 61449881 61449921 41 TCCTCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCT TCCTCCAGGTCTGCCTGGGCCCCCAGTGAGTGTCCCTGGCT < 41bp 1 0.375975521530644 1 0.368972808122635 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449901 chr20:61449905 synonymous SNV . 0 25 hm5C_associated_SNPs_14315 0 0 1 0 2 COL9A3 chr20:61449905 5'GT 61449905 Upstream 1bp
chr20 61449905 61449905 1 + G A rs567371176 61449902 + 61449882 61449922 41 CCTCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTG CCTCCAGGTCTGCCTGGGCCCCCAGTGAGTGTCCCTGGCTG < 41bp 1 0.312374157998587 1 0.373440802097321 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449902 chr20:61449905 synonymous SNV . 0 24 hm5C_associated_SNPs_14316 0 0 1 0 2 COL9A3 chr20:61449870 3'AG 61449870 Downstream 36bp
chr20 61449905 61449905 1 + G A rs567371176 61449902 + 61449882 61449922 41 CCTCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTG CCTCCAGGTCTGCCTGGGCCCCCAGTGAGTGTCCCTGGCTG < 41bp 1 0.312374157998587 1 0.373440802097321 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449902 chr20:61449905 synonymous SNV . 0 24 hm5C_associated_SNPs_14316 0 0 1 0 2 COL9A3 chr20:61449905 5'GT 61449905 Upstream 1bp
chr20 61449905 61449905 1 + G A rs567371176 61449903 + 61449883 61449923 41 CTCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTGG CTCCAGGTCTGCCTGGGCCCCCAGTGAGTGTCCCTGGCTGG < 41bp 1 0.200918738851138 1 0.279969990253448 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449903 chr20:61449905 synonymous SNV . 0 23 hm5C_associated_SNPs_14317 0 0 1 0 2 COL9A3 chr20:61449870 3'AG 61449870 Downstream 36bp
chr20 61449905 61449905 1 + G A rs567371176 61449903 + 61449883 61449923 41 CTCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTGG CTCCAGGTCTGCCTGGGCCCCCAGTGAGTGTCCCTGGCTGG < 41bp 1 0.200918738851138 1 0.279969990253448 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449903 chr20:61449905 synonymous SNV . 0 23 hm5C_associated_SNPs_14317 0 0 1 0 2 COL9A3 chr20:61449905 5'GT 61449905 Upstream 1bp
chr20 61449905 61449905 1 + G A rs567371176 61449904 + 61449884 61449924 41 TCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTGGG TCCAGGTCTGCCTGGGCCCCCAGTGAGTGTCCCTGGCTGGG < 41bp 1 0.283075101072302 1 0.482876837253571 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449904 chr20:61449905 synonymous SNV . 0 22 hm5C_associated_SNPs_14318 0 0 1 0 2 COL9A3 chr20:61449870 3'AG 61449870 Downstream 36bp
chr20 61449905 61449905 1 + G A rs567371176 61449904 + 61449884 61449924 41 TCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTGGG TCCAGGTCTGCCTGGGCCCCCAGTGAGTGTCCCTGGCTGGG < 41bp 1 0.283075101072302 1 0.482876837253571 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449904 chr20:61449905 synonymous SNV . 0 22 hm5C_associated_SNPs_14318 0 0 1 0 2 COL9A3 chr20:61449905 5'GT 61449905 Upstream 1bp
chr20 61450599 61450599 1 + C G rs143307835 61450587 + 61450567 61450607 41 TGCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAAC TGCACAGGGACCAAAGGGGGCCCCAGGAAAGCGGGGGAAAC < 41bp 1 0.330361659290722 1 0.0920256376266479 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450587 chr20:61450599 nonsynonymous SNV 0.971 2 33 hm5C_associated_SNPs_14319 0 0 1 0 2 COL9A3 chr20:61450574 3'AG 61450574 Downstream 26bp
chr20 61450599 61450599 1 + C G rs143307835 61450587 + 61450567 61450607 41 TGCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAAC TGCACAGGGACCAAAGGGGGCCCCAGGAAAGCGGGGGAAAC < 41bp 1 0.330361659290722 1 0.0920256376266479 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450587 chr20:61450599 nonsynonymous SNV 0.971 2 33 hm5C_associated_SNPs_14319 0 0 1 0 2 COL9A3 chr20:61450645 5'GT 61450645 Upstream 47bp
chr20 61450599 61450599 1 + C G rs143307835 61450588 + 61450568 61450608 41 GCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAACC GCACAGGGACCAAAGGGGGCCCCAGGAAAGCGGGGGAAACC < 41bp 1 0.195385105785008 1 0.1876120865345 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450588 chr20:61450599 nonsynonymous SNV 0.971 2 32 hm5C_associated_SNPs_14320 0 0 1 0 2 COL9A3 chr20:61450574 3'AG 61450574 Downstream 26bp
chr20 61450599 61450599 1 + C G rs143307835 61450588 + 61450568 61450608 41 GCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAACC GCACAGGGACCAAAGGGGGCCCCAGGAAAGCGGGGGAAACC < 41bp 1 0.195385105785008 1 0.1876120865345 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450588 chr20:61450599 nonsynonymous SNV 0.971 2 32 hm5C_associated_SNPs_14320 0 0 1 0 2 COL9A3 chr20:61450645 5'GT 61450645 Upstream 47bp
chr20 61595026 61595026 1 + C T rs199720748 61595023 + 61595003 61595043 41 TTCTTCGAGGAGACCTTCCCCGACGCCAAGGTGAGTCGGGG TTCTTCGAGGAGACCTTCCCCGATGCCAAGGTGAGTCGGGG < 41bp 1 0.290426770869877 1 0.401627987623215 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61595023 chr20:61595026 synonymous SNV . 0 24 hm5C_associated_SNPs_14321 0 0 1 0 2 SLC17A9 chr20:61594936 3'AG 61594936 Downstream 91bp
chr20 61595026 61595026 1 + C T rs199720748 61595023 + 61595003 61595043 41 TTCTTCGAGGAGACCTTCCCCGACGCCAAGGTGAGTCGGGG TTCTTCGAGGAGACCTTCCCCGATGCCAAGGTGAGTCGGGG < 41bp 1 0.290426770869877 1 0.401627987623215 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61595023 chr20:61595026 synonymous SNV . 0 24 hm5C_associated_SNPs_14321 0 0 1 0 2 SLC17A9 chr20:61595032 5'GT 61595032 Upstream 7bp
chr20 62152155 62152155 1 + G A rs547337063 62152156 + 62152136 62152176 41 TGTCGTGGCGCGGCTTCCCGCGGTCTTCTCTGCAAATGGGC TGTCGTGGCGCGGCTTCCCACGGTCTTCTCTGCAAATGGGC < 41bp 1 0.380699875581874 1 0.492642015218735 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPDPF ENSG00000125534 UTR5 Human protein_coding chr20:62152156 chr20:62152155 . . 0 20 hm5C_associated_SNPs_14322 0 0 1 0 1 PPDPF chr20:62152247 5'GT 62152247 Upstream 93bp
chr20 62152157 62152157 1 + G A rs310625 62152156 + 62152136 62152176 41 TGTCGTGGCGCGGCTTCCCGCGGTCTTCTCTGCAAATGGGC TGTCGTGGCGCGGCTTCCCGCAGTCTTCTCTGCAAATGGGC < 41bp 1 0.313321104109761 1 0.281545668840408 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPDPF ENSG00000125534 UTR5 Human protein_coding chr20:62152156 chr20:62152157 . . 0 22 hm5C_associated_SNPs_14323 0 0 1 0 1 PPDPF chr20:62152247 5'GT 62152247 Upstream 91bp
chr20 62309514 62309514 1 + G A rs41302954 62309512 + 62309492 62309532 41 GCCCAGGGCTGAACATGGAGCTGGAAGACATTGCAAAGCTG GCCCAGGGCTGAACATGGAGCTAGAAGACATTGCAAAGCTG < 41bp 1 0.499488468760957 1 0.482557564973831 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62309512 chr20:62309514 synonymous SNV . 0 23 hm5C_associated_SNPs_14326 0 0 1 0 1 RTEL1 chr20:62309498 3'AG 62309498 Downstream 17bp
chr20 62373343 62373343 1 + G A rs140539992 62373328 + 62373308 62373348 41 GACCTGGCCAGTGACCAGTCCTCTCCGTCCACCCCGTCACC GACCTGGCCAGTGACCAGTCCTCTCCGTCCACCCCATCACC < 41bp 1 0.0758717010606366 1 0.0956601798534393 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62373328 chr20:62373343 synonymous SNV . 0 36 hm5C_associated_SNPs_14330 0 0 1 0 1 SLC2A4RG chr20:62373409 5'GT 62373409 Upstream 67bp
chr21 17250133 17250133 1 + G A rs34979861 17250131 + 17250111 17250151 41 TAAGAAATTAAATGAGCAAGCCGCAGAACTCTTCGAATCTG TAAGAAATTAAATGAGCAAGCCACAGAACTCTTCGAATCTG < 41bp 1 0.404340114570476 1 0.163105189800262 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP25 ENSG00000155313 CDS Human protein_coding chr21:17250131 chr21:17250133 nonsynonymous SNV 0.894 3 23 hm5C_associated_SNPs_14412 0 0 1 0 1 USP25 chr21:17250115 3'AG 17250115 Downstream 19bp
chr21 33040849 33040849 1 + T A rs143100660 33040833 + 33040813 33040853 41 AGGTGGAAATGAAGAAAGTACAAAGACAGGAAACGCTGGAA AGGTGGAAATGAAGAAAGTACAAAGACAGGAAACGCAGGAA < 41bp 1 0.662580142777395 1 0.362880706787109 experiment 0.674839714445211 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SOD1 ENSG00000142168 CDS Human protein_coding chr21:33040833 chr21:33040849 synonymous SNV . 0 37 hm5C_associated_SNPs_14414 1 0 1 0 1 SOD1 chr21:33040784 3'AG 33040784 Downstream 66bp
chr21 33887131 33887131 1 + G A rs1129157 33887128 + 33887108 33887148 41 TCTCTTCCTCCTGCAGCCCACCCGGAGAGAGCTGCCCTGCT TCTCTTCCTCCTGCAGCCCACCCAGAGAGAGCTGCCCTGCT < 41bp 1 0.228816135418998 1 0.674376010894775 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33887128 chr21:33887131 synonymous SNV . 0 24 hm5C_associated_SNPs_14415 0 0 0 1 1 EVA1C chr21:33887124 3'AG 33887124 Downstream 8bp
chr21 33887131 33887131 1 + G A rs1129157 33887129 + 33887109 33887149 41 CTCTTCCTCCTGCAGCCCACCCGGAGAGAGCTGCCCTGCTG CTCTTCCTCCTGCAGCCCACCCAGAGAGAGCTGCCCTGCTG < 41bp 1 0.677000825694398 1 0.359885841608047 experiment 0.645998348611203 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33887129 chr21:33887131 synonymous SNV . 0 23 hm5C_associated_SNPs_14416 0 0 0 1 1 EVA1C chr21:33887124 3'AG 33887124 Downstream 8bp
chr21 33887131 33887131 1 + G A rs1129157 33887130 + 33887110 33887150 41 TCTTCCTCCTGCAGCCCACCCGGAGAGAGCTGCCCTGCTGT TCTTCCTCCTGCAGCCCACCCAGAGAGAGCTGCCCTGCTGT < 41bp 1 0.672151489862324 1 0.825838923454285 experiment 0.655697020275353 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33887130 chr21:33887131 synonymous SNV . 0 22 hm5C_associated_SNPs_14417 0 0 0 1 1 EVA1C chr21:33887124 3'AG 33887124 Downstream 8bp
chr21 34787294 34787294 1 + C G rs4986958 34787311 + 34787291 34787331 41 GCACGAGGCCTGTTGTCTACCAAGTGCAGTTTAAATAGTAA GCAGGAGGCCTGTTGTCTACCAAGTGCAGTTTAAATAGTAA < 41bp 1 0.567372969733284 1 0.701852202415466 experiment 0.865254060533431 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFNGR2 ENSG00000159128 CDS Human protein_coding chr21:34787311 chr21:34787294 nonsynonymous SNV 0.001 1 4 hm5C_associated_SNPs_14418 1 0 1 0 2 IFNGR2 chr21:34787195 3'AG 34787195 Downstream 100bp
chr21 34787294 34787294 1 + C G rs4986958 34787311 + 34787291 34787331 41 GCACGAGGCCTGTTGTCTACCAAGTGCAGTTTAAATAGTAA GCAGGAGGCCTGTTGTCTACCAAGTGCAGTTTAAATAGTAA < 41bp 1 0.567372969733284 1 0.701852202415466 experiment 0.865254060533431 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFNGR2 ENSG00000159128 CDS Human protein_coding chr21:34787311 chr21:34787294 nonsynonymous SNV 0.001 1 4 hm5C_associated_SNPs_14418 1 0 1 0 2 IFNGR2 chr21:34787327 5'GT 34787327 Upstream 34bp
chr21 34787312 34787312 1 + A G rs9808753 34787311 + 34787291 34787331 41 GCACGAGGCCTGTTGTCTACCAAGTGCAGTTTAAATAGTAA GCACGAGGCCTGTTGTCTACCGAGTGCAGTTTAAATAGTAA < 41bp 1 0.611063950871168 1 0.774399995803833 experiment 0.777872098257665 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFNGR2 ENSG00000159128 CDS Human protein_coding chr21:34787311 chr21:34787312 nonsynonymous SNV 0.171 0 22 hm5C_associated_SNPs_14419 0 1 0 0 1 IFNGR2 chr21:34787327 5'GT 34787327 Upstream 16bp
chr21 37612093 37612093 1 + C T rs61756713 37612088 + 37612068 37612108 41 TGTTTGTCGTGCTGGACAGCCTGGCCTGCACGGATGGTGCC TGTTTGTCGTGCTGGACAGCCTGGCTTGCACGGATGGTGCC < 41bp 1 0.567916722288224 1 0.466522812843323 experiment 0.864166555423551 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DOPEY2 ENSG00000142197 CDS Human protein_coding chr21:37612088 chr21:37612093 synonymous SNV . 0 26 hm5C_associated_SNPs_14422 0 0 1 0 1 DOPEY2 chr21:37612063 3'AG 37612063 Downstream 31bp
chr21 38558042 38558042 1 + A G rs143235006 38558059 + 38558039 38558079 41 AACATGAATTACATCTGGATCAGTCCCTTGAAATCAGGCAA AACGTGAATTACATCTGGATCAGTCCCTTGAAATCAGGCAA < 41bp 1 0.0571830080188918 1 0.203342437744141 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC3 ENSG00000182670 CDS Human protein_coding chr21:38558059 chr21:38558042 nonsynonymous SNV 0.874 0 4 hm5C_associated_SNPs_14423 0 0 1 0 1 TTC3 chr21:38558007 3'AG 38558007 Downstream 36bp
chr21 40191431 40191431 1 + T A rs457705 40191451 + 40191431 40191471 41 TCCCAAAGACCACGACTCCCCTGAGAACGGTGCGGACAGCT ACCCAAAGACCACGACTCCCCTGAGAACGGTGCGGACAGCT < 41bp 1 0.593761265742949 1 0.394904345273972 experiment 0.812477468514102 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191451 chr21:40191431 synonymous SNV . 0 1 hm5C_associated_SNPs_14424 0 0 1 0 1 ETS2 chr21:40191427 3'AG 40191427 Downstream 5bp
chr21 40191638 40191638 1 + A G rs461155 40191635 + 40191615 40191655 41 TACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACC TACATCCAAGAGAGGAGTGACCCGGTGGAGCAAGGCAAACC < 41bp 1 0.420992937759969 1 0.274870336055756 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191635 chr21:40191638 synonymous SNV . 0 24 hm5C_associated_SNPs_14425 0 0 0 0 1 ETS2 chr21:40191690 5'GT 40191690 Upstream 53bp
chr21 40191638 40191638 1 + A G rs461155 40191636 + 40191616 40191656 41 ACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACCA ACATCCAAGAGAGGAGTGACCCGGTGGAGCAAGGCAAACCA < 41bp 1 0.602510302573343 1 0.734512805938721 experiment 0.794979394853314 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191636 chr21:40191638 synonymous SNV . 0 23 hm5C_associated_SNPs_14426 0 0 0 0 1 ETS2 chr21:40191690 5'GT 40191690 Upstream 53bp
chr21 40191638 40191638 1 + A G rs461155 40191637 + 40191617 40191657 41 CATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACCAG CATCCAAGAGAGGAGTGACCCGGTGGAGCAAGGCAAACCAG < 41bp 1 0.699489271384764 1 0.808789849281311 experiment 0.601021457230471 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191637 chr21:40191638 synonymous SNV . 0 22 hm5C_associated_SNPs_14427 0 0 0 0 1 ETS2 chr21:40191690 5'GT 40191690 Upstream 53bp
chr21 40752394 40752394 1 + C A rs139208510 40752408 + 40752388 40752428 41 CCTCCTCCCGTCCTTCTCATCCTTCGTAAGTGGCTGCCTGG CCTCCTACCGTCCTTCTCATCCTTCGTAAGTGGCTGCCTGG < 41bp 1 0.072720293741157 1 0.187917739152908 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WRB;WRB-SH3BGR ENSG00000182093 CDS Human protein_coding chr21:40752408 chr21:40752394 synonymous SNV . 0 7 hm5C_associated_SNPs_14428 0 0 1 0 1 WRB;WRB-SH3BGR chr21:40752412 5'GT 40752412 Upstream 19bp
chr21 44189172 44189172 1 + A C rs3087994 44189185 + 44189165 44189205 41 CTGTGGCACCGTTCATGGACCGAGACAAAGTGACCAAGGCC CTGTGGCCCCGTTCATGGACCGAGACAAAGTGACCAAGGCC < 41bp 1 0.781914902713014 1 0.669223606586456 experiment 0.436170194573972 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDE9A ENSG00000160191 CDS Human protein_coding chr21:44189185 chr21:44189172 synonymous SNV . 0 8 hm5C_associated_SNPs_14430 0 0 0 0 2 PDE9A chr21:44189137 3'AG 44189137 Downstream 36bp
chr21 44189172 44189172 1 + A C rs3087994 44189185 + 44189165 44189205 41 CTGTGGCACCGTTCATGGACCGAGACAAAGTGACCAAGGCC CTGTGGCCCCGTTCATGGACCGAGACAAAGTGACCAAGGCC < 41bp 1 0.781914902713014 1 0.669223606586456 experiment 0.436170194573972 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDE9A ENSG00000160191 CDS Human protein_coding chr21:44189185 chr21:44189172 synonymous SNV . 0 8 hm5C_associated_SNPs_14430 0 0 0 0 2 PDE9A chr21:44189265 5'GT 44189265 Upstream 94bp
chr21 45106786 45106786 1 + T G rs138939671 45106800 + 45106780 45106820 41 AAACTTTTAGAGAAAACTAACTTGGAAAAGGAGAAAGGTAA AAACTTGTAGAGAAAACTAACTTGGAAAAGGAGAAAGGTAA < 41bp 1 0.253146266434951 1 0.168463617563248 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1B ENSG00000160208 CDS Human protein_coding chr21:45106800 chr21:45106786 nonsynonymous SNV 0.080 0 7 hm5C_associated_SNPs_14435 0 0 1 0 1 RRP1B chr21:45106816 5'GT 45106816 Upstream 31bp
chr21 45168884 45168884 1 + G A rs11539534 45168891 + 45168871 45168911 41 GCCAGTACGTCCCGGAGGACCTCCTTCCCGTCTACAAAGAA GCCAGTACGTCCCAGAGGACCTCCTTCCCGTCTACAAAGAA < 41bp 1 0.167741099076644 1 0.214289635419846 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PDXK ENSG00000160209 CDS Human protein_coding chr21:45168891 chr21:45168884 synonymous SNV . 0 14 hm5C_associated_SNPs_14436 0 0 1 0 2 PDXK chr21:45168876 3'AG 45168876 Downstream 9bp
chr21 45168884 45168884 1 + G A rs11539534 45168891 + 45168871 45168911 41 GCCAGTACGTCCCGGAGGACCTCCTTCCCGTCTACAAAGAA GCCAGTACGTCCCAGAGGACCTCCTTCCCGTCTACAAAGAA < 41bp 1 0.167741099076644 1 0.214289635419846 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PDXK ENSG00000160209 CDS Human protein_coding chr21:45168891 chr21:45168884 synonymous SNV . 0 14 hm5C_associated_SNPs_14436 0 0 1 0 2 PDXK chr21:45168961 5'GT 45168961 Upstream 78bp
chr21 45168884 45168884 1 + G A rs11539534 45168893 + 45168873 45168913 41 CAGTACGTCCCGGAGGACCTCCTTCCCGTCTACAAAGAAAA CAGTACGTCCCAGAGGACCTCCTTCCCGTCTACAAAGAAAA < 41bp 1 0.00319008227764204 1 0.142032355070114 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDXK ENSG00000160209 CDS Human protein_coding chr21:45168893 chr21:45168884 synonymous SNV . 0 12 hm5C_associated_SNPs_14437 0 0 1 0 2 PDXK chr21:45168876 3'AG 45168876 Downstream 9bp
chr21 45168884 45168884 1 + G A rs11539534 45168893 + 45168873 45168913 41 CAGTACGTCCCGGAGGACCTCCTTCCCGTCTACAAAGAAAA CAGTACGTCCCAGAGGACCTCCTTCCCGTCTACAAAGAAAA < 41bp 1 0.00319008227764204 1 0.142032355070114 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDXK ENSG00000160209 CDS Human protein_coding chr21:45168893 chr21:45168884 synonymous SNV . 0 12 hm5C_associated_SNPs_14437 0 0 1 0 2 PDXK chr21:45168961 5'GT 45168961 Upstream 78bp
chr21 45168884 45168884 1 + G A rs11539534 45168894 + 45168874 45168914 41 AGTACGTCCCGGAGGACCTCCTTCCCGTCTACAAAGAAAAA AGTACGTCCCAGAGGACCTCCTTCCCGTCTACAAAGAAAAA < 41bp 1 0.0192815913439575 1 0.127814888954163 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDXK ENSG00000160209 CDS Human protein_coding chr21:45168894 chr21:45168884 synonymous SNV . 0 11 hm5C_associated_SNPs_14438 0 0 1 0 2 PDXK chr21:45168876 3'AG 45168876 Downstream 9bp
chr21 45168884 45168884 1 + G A rs11539534 45168894 + 45168874 45168914 41 AGTACGTCCCGGAGGACCTCCTTCCCGTCTACAAAGAAAAA AGTACGTCCCAGAGGACCTCCTTCCCGTCTACAAAGAAAAA < 41bp 1 0.0192815913439575 1 0.127814888954163 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDXK ENSG00000160209 CDS Human protein_coding chr21:45168894 chr21:45168884 synonymous SNV . 0 11 hm5C_associated_SNPs_14438 0 0 1 0 2 PDXK chr21:45168961 5'GT 45168961 Upstream 78bp
chr21 45168914 45168914 1 + A G rs112579284 45168894 + 45168874 45168914 41 AGTACGTCCCGGAGGACCTCCTTCCCGTCTACAAAGAAAAA AGTACGTCCCGGAGGACCTCCTTCCCGTCTACAAAGAAAAG < 41bp 1 0.0219667370493916 1 0.139310330152512 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDXK ENSG00000160209 CDS Human protein_coding chr21:45168894 chr21:45168914 synonymous SNV . 0 41 hm5C_associated_SNPs_14439 0 0 1 0 2 PDXK chr21:45168876 3'AG 45168876 Downstream 39bp
chr21 45168914 45168914 1 + A G rs112579284 45168894 + 45168874 45168914 41 AGTACGTCCCGGAGGACCTCCTTCCCGTCTACAAAGAAAAA AGTACGTCCCGGAGGACCTCCTTCCCGTCTACAAAGAAAAG < 41bp 1 0.0219667370493916 1 0.139310330152512 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDXK ENSG00000160209 CDS Human protein_coding chr21:45168894 chr21:45168914 synonymous SNV . 0 41 hm5C_associated_SNPs_14439 0 0 1 0 2 PDXK chr21:45168961 5'GT 45168961 Upstream 48bp
chr21 45217929 45217929 1 + T C rs2838379 45217920 + 45217900 45217940 41 GCGTCGGACAGTGATGAGTCCTCTGAGGGTGGTGAGCGTGG GCGTCGGACAGTGATGAGTCCTCTGAGGGCGGTGAGCGTGG < 41bp 1 0.43496486927593 1 0.30589359998703 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217920 chr21:45217929 synonymous SNV . 0 30 hm5C_associated_SNPs_14453 0 0 1 0 1 RRP1 chr21:45217981 5'GT 45217981 Upstream 53bp
chr21 45217929 45217929 1 + T C rs2838379 45217944 + 45217924 45217964 41 GAGGGTGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGTC GAGGGCGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGTC < 41bp 1 0.639755152573427 1 0.471365094184875 experiment 0.720489694853145 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217944 chr21:45217929 synonymous SNV . 0 6 hm5C_associated_SNPs_14454 0 0 1 0 1 RRP1 chr21:45217981 5'GT 45217981 Upstream 53bp
chr21 45217929 45217929 1 + T C rs2838379 45217948 + 45217928 45217968 41 GTGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGTCTGAG GCGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGTCTGAG < 41bp 1 0.203258621213743 1 0.215269535779953 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217948 chr21:45217929 synonymous SNV . 0 2 hm5C_associated_SNPs_14455 0 0 1 0 1 RRP1 chr21:45217981 5'GT 45217981 Upstream 53bp
chr21 45217936 45217936 1 + C G rs200937759 45217920 + 45217900 45217940 41 GCGTCGGACAGTGATGAGTCCTCTGAGGGTGGTGAGCGTGG GCGTCGGACAGTGATGAGTCCTCTGAGGGTGGTGAGGGTGG < 41bp 1 0.374723293694763 1 0.356832146644592 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217920 chr21:45217936 nonsynonymous SNV 0.000 0 37 hm5C_associated_SNPs_14456 0 0 1 0 1 RRP1 chr21:45217981 5'GT 45217981 Upstream 46bp
chr21 45217936 45217936 1 + C G rs200937759 45217944 + 45217924 45217964 41 GAGGGTGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGTC GAGGGTGGTGAGGGTGGAGACGCGCTGTCCCAGAAGAGGTC < 41bp 1 0.692869152827219 1 0.571770250797272 experiment 0.614261694345561 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217944 chr21:45217936 nonsynonymous SNV 0.000 0 13 hm5C_associated_SNPs_14457 0 0 1 0 1 RRP1 chr21:45217981 5'GT 45217981 Upstream 46bp
chr21 45217936 45217936 1 + C G rs200937759 45217948 + 45217928 45217968 41 GTGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGTCTGAG GTGGTGAGGGTGGAGACGCGCTGTCCCAGAAGAGGTCTGAG < 41bp 1 0.229507665437229 1 0.339119106531143 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217948 chr21:45217936 nonsynonymous SNV 0.000 0 9 hm5C_associated_SNPs_14458 0 0 1 0 1 RRP1 chr21:45217981 5'GT 45217981 Upstream 46bp
chr21 45217963 45217963 1 + T C rs200385471 45217944 + 45217924 45217964 41 GAGGGTGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGTC GAGGGTGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGCC < 41bp 1 0.626489098369508 1 0.510167837142944 experiment 0.747021803260985 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217944 chr21:45217963 nonsynonymous SNV 0.016 0 40 hm5C_associated_SNPs_14459 0 0 1 0 1 RRP1 chr21:45217981 5'GT 45217981 Upstream 19bp
chr21 45217963 45217963 1 + T C rs200385471 45217948 + 45217928 45217968 41 GTGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGTCTGAG GTGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGCCTGAG < 41bp 1 0.221885273099029 1 0.385236293077469 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217948 chr21:45217963 nonsynonymous SNV 0.016 0 36 hm5C_associated_SNPs_14460 0 0 1 0 1 RRP1 chr21:45217981 5'GT 45217981 Upstream 19bp
chr21 45217963 45217963 1 + T C rs200385471 45217964 + 45217944 45217984 41 CGCGCTGTCCCAGAAGAGGTCTGAGAAGCCGCCCGCAGGTG CGCGCTGTCCCAGAAGAGGCCTGAGAAGCCGCCCGCAGGTG < 41bp 1 0.625764737319275 1 0.22825813293457 experiment 0.748470525361451 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217964 chr21:45217963 nonsynonymous SNV 0.016 0 20 hm5C_associated_SNPs_14461 0 0 1 0 1 RRP1 chr21:45217981 5'GT 45217981 Upstream 19bp
chr21 45217973 45217973 1 + C A rs58028593 45217964 + 45217944 45217984 41 CGCGCTGTCCCAGAAGAGGTCTGAGAAGCCGCCCGCAGGTG CGCGCTGTCCCAGAAGAGGTCTGAGAAGCAGCCCGCAGGTG < 41bp 1 0.686154837288497 1 0.199104428291321 experiment 0.627690325423006 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217964 chr21:45217973 nonsynonymous SNV 0.001 0 30 hm5C_associated_SNPs_14462 0 0 1 0 1 RRP1 chr21:45217981 5'GT 45217981 Upstream 9bp
chr21 45217979 45217979 1 + C T rs117749073 45217964 + 45217944 45217984 41 CGCGCTGTCCCAGAAGAGGTCTGAGAAGCCGCCCGCAGGTG CGCGCTGTCCCAGAAGAGGTCTGAGAAGCCGCCCGTAGGTG < 41bp 1 0.650130013130928 1 0.189361721277237 experiment 0.699739973738145 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217964 chr21:45217979 nonsynonymous SNV 0.006 0 36 hm5C_associated_SNPs_14463 0 0 1 0 1 RRP1 chr21:45217981 5'GT 45217981 Upstream 3bp
chr21 45544594 45544594 1 + T C rs2187313 45544584 + 45544564 45544604 41 AAGAGGTTCGAGATCTCTTGCAACCTGTCTTTGGACGCCAT AAGAGGTTCGAGATCTCTTGCAACCTGTCTCTGGACGCCAT < 41bp 1 0.31203341963895 1 0.0810606181621552 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45544584 chr21:45544594 synonymous SNV . 0 31 hm5C_associated_SNPs_14464 0 0 1 0 1 PWP2 chr21:45544608 5'GT 45544608 Upstream 15bp
chr21 45560133 45560133 1 + A T rs199921521 45560135 + 45560115 45560155 41 CTTTTGTCTCCCGGTAGGAGCACGTTTGCCGTGGACGGGAA CTTTTGTCTCCCGGTAGGTGCACGTTTGCCGTGGACGGGAA < 41bp 1 0.566040322725746 1 0.131549298763275 experiment 0.867919354548509 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45560135 chr21:45560133 nonsynonymous SNV 0.761 2 19 hm5C_associated_SNPs_14475 0 0 1 0 2 C21orf33 chr21:45560132 3'AG 45560132 Downstream 2bp
chr21 45560133 45560133 1 + A T rs199921521 45560135 + 45560115 45560155 41 CTTTTGTCTCCCGGTAGGAGCACGTTTGCCGTGGACGGGAA CTTTTGTCTCCCGGTAGGTGCACGTTTGCCGTGGACGGGAA < 41bp 1 0.566040322725746 1 0.131549298763275 experiment 0.867919354548509 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45560135 chr21:45560133 nonsynonymous SNV 0.761 2 19 hm5C_associated_SNPs_14475 0 0 1 0 2 C21orf33 chr21:45560224 5'GT 45560224 Upstream 92bp
chr21 45560145 45560145 1 + G A rs17264865 45560135 + 45560115 45560155 41 CTTTTGTCTCCCGGTAGGAGCACGTTTGCCGTGGACGGGAA CTTTTGTCTCCCGGTAGGAGCACGTTTGCCATGGACGGGAA < 41bp 1 0.616842563452709 1 0.252911806106567 experiment 0.766314873094582 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45560135 chr21:45560145 nonsynonymous SNV 0.821 3 31 hm5C_associated_SNPs_14476 0 0 1 0 2 C21orf33 chr21:45560132 3'AG 45560132 Downstream 14bp
chr21 45560145 45560145 1 + G A rs17264865 45560135 + 45560115 45560155 41 CTTTTGTCTCCCGGTAGGAGCACGTTTGCCGTGGACGGGAA CTTTTGTCTCCCGGTAGGAGCACGTTTGCCATGGACGGGAA < 41bp 1 0.616842563452709 1 0.252911806106567 experiment 0.766314873094582 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45560135 chr21:45560145 nonsynonymous SNV 0.821 3 31 hm5C_associated_SNPs_14476 0 0 1 0 2 C21orf33 chr21:45560224 5'GT 45560224 Upstream 80bp
chr21 45560167 45560167 1 + T C rs146071545 45560184 + 45560164 45560204 41 AGGTGAATAAAGAAGTGGAGCGTGTCCTGAAGGAGTTCCAC AGGCGAATAAAGAAGTGGAGCGTGTCCTGAAGGAGTTCCAC < 41bp 1 0.266334338726641 1 0.22396457195282 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45560184 chr21:45560167 nonsynonymous SNV 0.003 4 4 hm5C_associated_SNPs_14477 0 0 1 0 2 C21orf33 chr21:45560132 3'AG 45560132 Downstream 36bp
chr21 45560167 45560167 1 + T C rs146071545 45560184 + 45560164 45560204 41 AGGTGAATAAAGAAGTGGAGCGTGTCCTGAAGGAGTTCCAC AGGCGAATAAAGAAGTGGAGCGTGTCCTGAAGGAGTTCCAC < 41bp 1 0.266334338726641 1 0.22396457195282 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45560184 chr21:45560167 nonsynonymous SNV 0.003 4 4 hm5C_associated_SNPs_14477 0 0 1 0 2 C21orf33 chr21:45560224 5'GT 45560224 Upstream 58bp
chr21 45733867 45733867 1 + A T rs1057037 45733862 + 45733842 45733882 41 TTCATCCCCGAGGCTCCACCCGAGGACGGCTGGGAGAACTT TTCATCCCCGAGGCTCCACCCGAGGTCGGCTGGGAGAACTT < 41bp 1 0.708290635712617 1 0.831601619720459 experiment 0.583418728574766 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45733862 chr21:45733867 nonsynonymous SNV 0.721 1 26 hm5C_associated_SNPs_14478 0 0 1 0 2 PFKL chr21:45733796 3'AG 45733796 Downstream 72bp
chr21 45733867 45733867 1 + A T rs1057037 45733862 + 45733842 45733882 41 TTCATCCCCGAGGCTCCACCCGAGGACGGCTGGGAGAACTT TTCATCCCCGAGGCTCCACCCGAGGTCGGCTGGGAGAACTT < 41bp 1 0.708290635712617 1 0.831601619720459 experiment 0.583418728574766 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45733862 chr21:45733867 nonsynonymous SNV 0.721 1 26 hm5C_associated_SNPs_14478 0 0 1 0 2 PFKL chr21:45733904 5'GT 45733904 Upstream 38bp
chr21 45736383 45736383 1 + G A rs9980790 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACGTGCAGCGGGGAGGGACACCCTCTGCCTTCGACCGGA < 41bp 1 0.337114184600485 1 0.147743821144104 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736383 synonymous SNV . 0 22 hm5C_associated_SNPs_14479 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 69bp
chr21 45736383 45736383 1 + G A rs9980790 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACGTGCAGCGGGGAGGGACACCCTCTGCCTTCGACCGGA < 41bp 1 0.337114184600485 1 0.147743821144104 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736383 synonymous SNV . 0 22 hm5C_associated_SNPs_14479 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 25bp
chr21 45736383 45736383 1 + G A rs9980790 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACGTGCAGCGGGGAGGGACACCCTCTGCCTTCGACCGGATC < 41bp 1 0.0939851795540332 1 0.100103437900543 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736383 synonymous SNV . 0 20 hm5C_associated_SNPs_14480 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 69bp
chr21 45736383 45736383 1 + G A rs9980790 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACGTGCAGCGGGGAGGGACACCCTCTGCCTTCGACCGGATC < 41bp 1 0.0939851795540332 1 0.100103437900543 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736383 synonymous SNV . 0 20 hm5C_associated_SNPs_14480 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 25bp
chr21 45736383 45736383 1 + G A rs9980790 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CGTGCAGCGGGGAGGGACACCCTCTGCCTTCGACCGGATCC < 41bp 1 0.10625685228149 1 0.0492707490921021 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736383 synonymous SNV . 0 19 hm5C_associated_SNPs_14481 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 69bp
chr21 45736383 45736383 1 + G A rs9980790 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CGTGCAGCGGGGAGGGACACCCTCTGCCTTCGACCGGATCC < 41bp 1 0.10625685228149 1 0.0492707490921021 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736383 synonymous SNV . 0 19 hm5C_associated_SNPs_14481 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 25bp
chr21 45736383 45736383 1 + G A rs9980790 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT GTGCAGCGGGGAGGGACACCCTCTGCCTTCGACCGGATCCT < 41bp 1 0.466847069871732 1 0.481618613004684 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736383 synonymous SNV . 0 18 hm5C_associated_SNPs_14482 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 69bp
chr21 45736383 45736383 1 + G A rs9980790 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT GTGCAGCGGGGAGGGACACCCTCTGCCTTCGACCGGATCCT < 41bp 1 0.466847069871732 1 0.481618613004684 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736383 synonymous SNV . 0 18 hm5C_associated_SNPs_14482 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 25bp
chr21 45736395 45736395 1 + C G rs139920536 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTGGACCGGA < 41bp 1 0.403751992907717 1 0.35181799530983 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736395 nonsynonymous SNV 0.570 5 34 hm5C_associated_SNPs_14483 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 81bp
chr21 45736395 45736395 1 + C G rs139920536 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTGGACCGGA < 41bp 1 0.403751992907717 1 0.35181799530983 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736395 nonsynonymous SNV 0.570 5 34 hm5C_associated_SNPs_14483 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 13bp
chr21 45736395 45736395 1 + C G rs139920536 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTGGACCGGATC < 41bp 1 0.0912480020668787 1 0.130327850580215 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736395 nonsynonymous SNV 0.570 5 32 hm5C_associated_SNPs_14484 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 81bp
chr21 45736395 45736395 1 + C G rs139920536 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTGGACCGGATC < 41bp 1 0.0912480020668787 1 0.130327850580215 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736395 nonsynonymous SNV 0.570 5 32 hm5C_associated_SNPs_14484 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 13bp
chr21 45736395 45736395 1 + C G rs139920536 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CGTGCAGCGGGGAGGGACGCCCTCTGCCTTGGACCGGATCC < 41bp 1 0.0786011268544399 1 0.126478672027588 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736395 nonsynonymous SNV 0.570 5 31 hm5C_associated_SNPs_14485 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 81bp
chr21 45736395 45736395 1 + C G rs139920536 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CGTGCAGCGGGGAGGGACGCCCTCTGCCTTGGACCGGATCC < 41bp 1 0.0786011268544399 1 0.126478672027588 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736395 nonsynonymous SNV 0.570 5 31 hm5C_associated_SNPs_14485 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 13bp
chr21 45736395 45736395 1 + C G rs139920536 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT GTGCAGCGGGGAGGGACGCCCTCTGCCTTGGACCGGATCCT < 41bp 1 0.370977142621927 1 0.51266211271286 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736395 nonsynonymous SNV 0.570 5 30 hm5C_associated_SNPs_14486 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 81bp
chr21 45736395 45736395 1 + C G rs139920536 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT GTGCAGCGGGGAGGGACGCCCTCTGCCTTGGACCGGATCCT < 41bp 1 0.370977142621927 1 0.51266211271286 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736395 nonsynonymous SNV 0.570 5 30 hm5C_associated_SNPs_14486 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 13bp
chr21 45740045 45740045 1 + G A rs11908697 45740065 + 45740045 45740085 41 GGCGCCCACAGAGGGAGGAACGGGCTCAGTTATTCTGCAGC AGCGCCCACAGAGGGAGGAACGGGCTCAGTTATTCTGCAGC < 41bp 1 0.500817253516732 1 0.496525496244431 experiment 0.998365492966537 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PFKL ENSG00000141959 intronic Human protein_coding chr21:45740065 chr21:45740045 . . 0 1 hm5C_associated_SNPs_14487 0 0 1 0 1 PFKL chr21:45739967 3'AG 45739967 Downstream 79bp
chr21 46888610 46888610 1 + G A rs534851819 46888598 + 46888578 46888618 41 TACGTGGACTGTGAGGAGTTCCAGAGAATGCCGCTTGCTCG TACGTGGACTGTGAGGAGTTCCAGAGAATGCCACTTGCTCG < 41bp 1 0.392037021506064 1 0.464513808488846 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46888598 chr21:46888610 synonymous SNV . 0 33 hm5C_associated_SNPs_14491 0 0 1 0 1 COL18A1 chr21:46888700 5'GT 46888700 Upstream 91bp
chr21 46900062 46900062 1 + G A rs61738822 46900048 + 46900028 46900068 41 GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACGACAAGC GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACAACAAGC < 41bp 1 0.0485315679437501 1 0.0588445067405701 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900048 chr21:46900062 nonsynonymous SNV 0.846 3 35 hm5C_associated_SNPs_14492 1 0 0 0 2 COL18A1 chr21:46899984 3'AG 46899984 Downstream 79bp
chr21 46900062 46900062 1 + G A rs61738822 46900048 + 46900028 46900068 41 GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACGACAAGC GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACAACAAGC < 41bp 1 0.0485315679437501 1 0.0588445067405701 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900048 chr21:46900062 nonsynonymous SNV 0.846 3 35 hm5C_associated_SNPs_14492 1 0 0 0 2 COL18A1 chr21:46900070 5'GT 46900070 Upstream 9bp
chr21 46900410 46900410 1 + C T rs2236467 46900416 + 46900396 46900436 41 GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTGCGGGT GAGGGATCTGGCTTTGGGGGCGATCTGGAGGCCCTGCGGGT < 41bp 1 0.0373459918126716 1 0.162252157926559 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900416 chr21:46900410 synonymous SNV . 0 15 hm5C_associated_SNPs_14493 1 0 1 0 2 COL18A1 chr21:46900381 3'AG 46900381 Downstream 30bp
chr21 46900410 46900410 1 + C T rs2236467 46900416 + 46900396 46900436 41 GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTGCGGGT GAGGGATCTGGCTTTGGGGGCGATCTGGAGGCCCTGCGGGT < 41bp 1 0.0373459918126716 1 0.162252157926559 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900416 chr21:46900410 synonymous SNV . 0 15 hm5C_associated_SNPs_14493 1 0 1 0 2 COL18A1 chr21:46900434 5'GT 46900434 Upstream 25bp
chr21 46931109 46931109 1 + G A rs12483377 46931104 + 46931084 46931124 41 GCCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC GCCCGGGGCACGCATCTTCTCCTTTAACGGCAAGGACGTCC < 41bp 1 0.04101942464833 1 0.346382081508636 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931104 chr21:46931109 nonsynonymous SNV 0.595 3 26 hm5C_associated_SNPs_14494 2 1 1 0 2 COL18A1 chr21:46931025 3'AG 46931025 Downstream 85bp
chr21 46931109 46931109 1 + G A rs12483377 46931104 + 46931084 46931124 41 GCCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC GCCCGGGGCACGCATCTTCTCCTTTAACGGCAAGGACGTCC < 41bp 1 0.04101942464833 1 0.346382081508636 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931104 chr21:46931109 nonsynonymous SNV 0.595 3 26 hm5C_associated_SNPs_14494 2 1 1 0 2 COL18A1 chr21:46931140 5'GT 46931140 Upstream 32bp
chr21 46931109 46931109 1 + G A rs12483377 46931105 + 46931085 46931125 41 CCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT CCCGGGGCACGCATCTTCTCCTTTAACGGCAAGGACGTCCT < 41bp 1 0.118438262340799 1 0.190991878509521 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931105 chr21:46931109 nonsynonymous SNV 0.595 3 25 hm5C_associated_SNPs_14495 2 1 1 0 2 COL18A1 chr21:46931025 3'AG 46931025 Downstream 85bp
chr21 46931109 46931109 1 + G A rs12483377 46931105 + 46931085 46931125 41 CCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT CCCGGGGCACGCATCTTCTCCTTTAACGGCAAGGACGTCCT < 41bp 1 0.118438262340799 1 0.190991878509521 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931105 chr21:46931109 nonsynonymous SNV 0.595 3 25 hm5C_associated_SNPs_14495 2 1 1 0 2 COL18A1 chr21:46931140 5'GT 46931140 Upstream 32bp
chr21 47805891 47805891 1 + A G rs140424584 47805872 + 47805852 47805892 41 CTCCTCTCCATGCTCAAGGCCGACGTCAACCTGTCCCACAG CTCCTCTCCATGCTCAAGGCCGACGTCAACCTGTCCCACGG < 41bp 1 0.284853912471183 1 0.270218253135681 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47805872 chr21:47805891 nonsynonymous SNV 0.000 0 40 hm5C_associated_SNPs_14499 0 0 0 0 1 PCNT chr21:47805898 5'GT 47805898 Upstream 8bp
chr21 47841989 47841989 1 + C T rs61735814 47842001 + 47841981 47842021 41 GTTTCAGCCGCTGCCGGAAGCCATGAAGGAGAAGGAAGTGC GTTTCAGCTGCTGCCGGAAGCCATGAAGGAGAAGGAAGTGC < 41bp 1 0.0589906003150226 1 0.404620885848999 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47842001 chr21:47841989 nonsynonymous SNV 0.000 0 9 hm5C_associated_SNPs_14511 2 0 1 0 1 PCNT chr21:47842038 5'GT 47842038 Upstream 50bp
chr21 47842018 47842018 1 + G A rs75024419 47842001 + 47841981 47842021 41 GTTTCAGCCGCTGCCGGAAGCCATGAAGGAGAAGGAAGTGC GTTTCAGCCGCTGCCGGAAGCCATGAAGGAGAAGGAAATGC < 41bp 1 0.054644682748791 1 0.306631803512573 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47842001 chr21:47842018 nonsynonymous SNV 0.006 2 38 hm5C_associated_SNPs_14512 2 0 1 0 1 PCNT chr21:47842038 5'GT 47842038 Upstream 21bp
chr21 47864716 47864716 1 + T C rs111389121 47864706 + 47864686 47864726 41 ATTCACCATTTAGAAGTGATCCAGCAAAGATTGGGAGGGGT ATTCACCATTTAGAAGTGATCCAGCAAAGACTGGGAGGGGT < 41bp 1 0.0590581093542597 1 0.414367079734802 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47864706 chr21:47864716 synonymous SNV . 0 31 hm5C_associated_SNPs_14513 2 0 1 0 1 PCNT chr21:47864734 5'GT 47864734 Upstream 19bp
chr21 47975907 47975907 1 + A G rs573139009 47975902 + 47975882 47975922 41 TCCTGTTTAACAGATGACATCCCAAAAAAGAAGATAGCAAG TCCTGTTTAACAGATGACATCCCAAGAAAGAAGATAGCAAG < 41bp 1 0.219842557769268 1 0.356637597084045 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47975902 chr21:47975907 nonsynonymous SNV 0.988 1 26 hm5C_associated_SNPs_14514 0 0 1 0 2 DIP2A chr21:47975895 3'AG 47975895 Downstream 13bp
chr21 47975907 47975907 1 + A G rs573139009 47975902 + 47975882 47975922 41 TCCTGTTTAACAGATGACATCCCAAAAAAGAAGATAGCAAG TCCTGTTTAACAGATGACATCCCAAGAAAGAAGATAGCAAG < 41bp 1 0.219842557769268 1 0.356637597084045 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47975902 chr21:47975907 nonsynonymous SNV 0.988 1 26 hm5C_associated_SNPs_14514 0 0 1 0 2 DIP2A chr21:47976004 5'GT 47976004 Upstream 98bp
chr21 47983806 47983806 1 + C G rs201790767 47983797 + 47983777 47983817 41 CCCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG CCCGGCGTGAAGGTCATCATCGCACACACGGAGACCAAAGG < 41bp 1 0.307406097951424 1 0.224317967891693 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47983797 chr21:47983806 synonymous SNV . 0 30 hm5C_associated_SNPs_14515 0 0 1 1 2 DIP2A chr21:47983771 3'AG 47983771 Downstream 36bp
chr21 47983806 47983806 1 + C G rs201790767 47983797 + 47983777 47983817 41 CCCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG CCCGGCGTGAAGGTCATCATCGCACACACGGAGACCAAAGG < 41bp 1 0.307406097951424 1 0.224317967891693 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47983797 chr21:47983806 synonymous SNV . 0 30 hm5C_associated_SNPs_14515 0 0 1 1 2 DIP2A chr21:47983845 5'GT 47983845 Upstream 40bp
chr21 48063447 48063447 1 + G A rs148794096 48063444 + 48063424 48063464 41 ACGCTTTCCTTGGCTTTGAGCAGGGAGAAGAGCCTGCTGAG ACGCTTTCCTTGGCTTTGAGCAGAGAGAAGAGCCTGCTGAG < 41bp 1 0.453228826020315 1 0.846452355384827 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48063444 chr21:48063447 nonsynonymous SNV 0.683 0 24 hm5C_associated_SNPs_14516 0 0 1 0 1 PRMT2 chr21:48063447 3'AG 48063447 Downstream 1bp
chr22 18894183 18894183 1 + C A rs143626432 18894189 + 18894169 18894209 41 CTGGAGATCCAGCACCTCACCGAAAAGAGCCTGTACAACCA CTGGAGATCCAGCAACTCACCGAAAAGAGCCTGTACAACCA < 41bp 1 0.770074132665584 1 0.827258467674255 experiment 0.459851734668832 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DGCR6 ENSG00000183628 CDS Human protein_coding chr22:18894189 chr22:18894183 nonsynonymous SNV 0.997 1 15 hm5C_associated_SNPs_14544 0 0 0 0 1 DGCR6 chr22:18894238 5'GT 18894238 Upstream 56bp
chr22 18979462 18979462 1 + C A rs577669189 18979466 + 18979446 18979486 41 AGATGGAGAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAAC AGATGGAGAAGCGAACAAAGCCTGTCTGTGTGTTCTGGAAC < 41bp 1 0.140421777230101 1 0.060146152973175 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979466 chr22:18979462 . . 0 17 hm5C_associated_SNPs_14546 0 0 0 0 1 DGCR5 chr22:18979530 5'GT 18979530 Upstream 69bp
chr22 19492948 19492948 1 + C T rs201188510 19492963 + 19492943 19492983 41 CGGAACGAGGATGAGGAGAACACACTCTCCGTGGACTGCAC CGGAATGAGGATGAGGAGAACACACTCTCCGTGGACTGCAC < 41bp 1 0.40572679350793 1 0.120424568653107 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19492963 chr22:19492948 synonymous SNV . 0 6 hm5C_associated_SNPs_14547 0 0 1 0 2 CDC45 chr22:19492885 3'AG 19492885 Downstream 64bp
chr22 19492948 19492948 1 + C T rs201188510 19492963 + 19492943 19492983 41 CGGAACGAGGATGAGGAGAACACACTCTCCGTGGACTGCAC CGGAATGAGGATGAGGAGAACACACTCTCCGTGGACTGCAC < 41bp 1 0.40572679350793 1 0.120424568653107 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19492963 chr22:19492948 synonymous SNV . 0 6 hm5C_associated_SNPs_14547 0 0 1 0 2 CDC45 chr22:19493004 5'GT 19493004 Upstream 57bp
chr22 19706000 19706000 1 + G A rs577427065 19705998 + 19705978 19706018 41 CTCTGGCTCGGGTGCGGGAGCGGGGCCTGCCCGGACTGCGA CTCTGGCTCGGGTGCGGGAGCGAGGCCTGCCCGGACTGCGA < 41bp 1 0.682496874239526 1 0.930372714996338 experiment 0.635006251520948 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEPT5-GP1BB ENSG00000184702 UTR5 Human protein_coding chr22:19705998 chr22:19706000 . . 0 23 hm5C_associated_SNPs_14548 0 0 1 0 1 SEPT5-GP1BB chr22:19706094 5'GT 19706094 Upstream 95bp
chr22 19939082 19939082 1 + C T rs140215652 19939081 + 19939061 19939101 41 CGCTGTGTACACTGTGTGCTCCGGTTGTTGCATCCGAGGGT CGCTGTGTACACTGTGTGCTCTGGTTGTTGCATCCGAGGGT < 41bp 1 0.4354026011675 1 0.532157421112061 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control COMT ENSG00000093010 UTR5 Human protein_coding chr22:19939081 chr22:19939082 . . 0 22 hm5C_associated_SNPs_14552 0 0 1 0 1 COMT chr22:19939177 5'GT 19939177 Upstream 96bp
chr22 19939083 19939083 1 + G A rs191619546 19939081 + 19939061 19939101 41 CGCTGTGTACACTGTGTGCTCCGGTTGTTGCATCCGAGGGT CGCTGTGTACACTGTGTGCTCCAGTTGTTGCATCCGAGGGT < 41bp 1 0.160623980200484 1 0.566509604454041 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control COMT ENSG00000093010 UTR5 Human protein_coding chr22:19939081 chr22:19939083 . . 0 23 hm5C_associated_SNPs_14553 0 0 1 0 1 COMT chr22:19939177 5'GT 19939177 Upstream 95bp
chr22 19939096 19939096 1 + G A rs739368 19939081 + 19939061 19939101 41 CGCTGTGTACACTGTGTGCTCCGGTTGTTGCATCCGAGGGT CGCTGTGTACACTGTGTGCTCCGGTTGTTGCATCCAAGGGT < 41bp 1 0.232160190416575 1 0.738495051860809 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control COMT ENSG00000093010 UTR5 Human protein_coding chr22:19939081 chr22:19939096 . . 0 36 hm5C_associated_SNPs_14554 0 0 1 0 1 COMT chr22:19939177 5'GT 19939177 Upstream 82bp
chr22 20748544 20748544 1 + C T rs140074587 20748525 + 20748505 20748545 41 TTGCCGGTCCCTCAGACCGTCGGCGGTCTCTGTCCGCTTCG TTGCCGGTCCCTCAGACCGTCGGCGGTCTCTGTCCGCTTTG < 41bp 1 0.653087827110815 1 0.41402542591095 experiment 0.69382434577837 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF74 ENSG00000185252 UTR5 Human protein_coding chr22:20748525 chr22:20748544 . . 0 40 hm5C_associated_SNPs_14558 0 0 1 0 1 ZNF74 chr22:20748624 5'GT 20748624 Upstream 81bp
chr22 22025325 22025325 1 + C T rs149000654 22025316 + 22025296 22025336 41 CAGCCCTTTGTCTACCCAGTCTGCACTCCCGATGGCATCGT CAGCCCTTTGTCTACCCAGTCTGCACTCCTGATGGCATCGT < 41bp 1 0.50012394525425 1 0.511126458644867 experiment 0.999752109491499 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22025316 chr22:22025325 synonymous SNV . 0 30 hm5C_associated_SNPs_14578 0 0 1 0 2 PPIL2 chr22:22025286 3'AG 22025286 Downstream 40bp
chr22 22025325 22025325 1 + C T rs149000654 22025316 + 22025296 22025336 41 CAGCCCTTTGTCTACCCAGTCTGCACTCCCGATGGCATCGT CAGCCCTTTGTCTACCCAGTCTGCACTCCTGATGGCATCGT < 41bp 1 0.50012394525425 1 0.511126458644867 experiment 0.999752109491499 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22025316 chr22:22025325 synonymous SNV . 0 30 hm5C_associated_SNPs_14578 0 0 1 0 2 PPIL2 chr22:22025348 5'GT 22025348 Upstream 24bp
chr22 22040816 22040816 1 + C T rs201566623 22040825 + 22040805 22040845 41 TTCACCTCCACCGCGATGGTCCCGGAGACCACACATGAAGC TTCACCTCCACTGCGATGGTCCCGGAGACCACACATGAAGC < 41bp 1 0.262480537743225 1 0.320139706134796 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040825 chr22:22040816 synonymous SNV . 0 12 hm5C_associated_SNPs_14579 0 0 1 0 2 PPIL2 chr22:22040772 3'AG 22040772 Downstream 45bp
chr22 22040816 22040816 1 + C T rs201566623 22040825 + 22040805 22040845 41 TTCACCTCCACCGCGATGGTCCCGGAGACCACACATGAAGC TTCACCTCCACTGCGATGGTCCCGGAGACCACACATGAAGC < 41bp 1 0.262480537743225 1 0.320139706134796 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040825 chr22:22040816 synonymous SNV . 0 12 hm5C_associated_SNPs_14579 0 0 1 0 2 PPIL2 chr22:22040847 5'GT 22040847 Upstream 32bp
chr22 23596134 23596134 1 + G A rs139201536 23596125 + 23596105 23596145 41 AGCAGCAAGGGCAGGGGCAGCCGGGATGCGCTGGTCTCGGG AGCAGCAAGGGCAGGGGCAGCCGGGATGCACTGGTCTCGGG < 41bp 1 0.640437706768225 1 0.744072139263153 experiment 0.71912458646355 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23596125 chr22:23596134 synonymous SNV . 0 30 hm5C_associated_SNPs_14583 0 0 1 0 1 BCR chr22:23596167 5'GT 23596167 Upstream 34bp
chr22 23656249 23656249 1 + C T rs544916353 23656252 + 23656232 23656272 41 TTCCTTTTCCTTCTGGACCACCTGAAAAGGTAGCCCAGCTC TTCCTTTTCCTTCTGGATCACCTGAAAAGGTAGCCCAGCTC < 41bp 1 0.189682452096358 1 0.519204676151276 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23656252 chr22:23656249 synonymous SNV . 0 18 hm5C_associated_SNPs_14584 0 0 1 0 2 BCR chr22:23656155 3'AG 23656155 Downstream 95bp
chr22 23656249 23656249 1 + C T rs544916353 23656252 + 23656232 23656272 41 TTCCTTTTCCTTCTGGACCACCTGAAAAGGTAGCCCAGCTC TTCCTTTTCCTTCTGGATCACCTGAAAAGGTAGCCCAGCTC < 41bp 1 0.189682452096358 1 0.519204676151276 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23656252 chr22:23656249 synonymous SNV . 0 18 hm5C_associated_SNPs_14584 0 0 1 0 2 BCR chr22:23656260 5'GT 23656260 Upstream 12bp
chr22 23656249 23656249 1 + C T rs544916353 23656253 + 23656233 23656273 41 TCCTTTTCCTTCTGGACCACCTGAAAAGGTAGCCCAGCTCT TCCTTTTCCTTCTGGATCACCTGAAAAGGTAGCCCAGCTCT < 41bp 1 0.445942726177877 1 0.427864342927933 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23656253 chr22:23656249 synonymous SNV . 0 17 hm5C_associated_SNPs_14585 0 0 1 0 2 BCR chr22:23656155 3'AG 23656155 Downstream 95bp
chr22 23656249 23656249 1 + C T rs544916353 23656253 + 23656233 23656273 41 TCCTTTTCCTTCTGGACCACCTGAAAAGGTAGCCCAGCTCT TCCTTTTCCTTCTGGATCACCTGAAAAGGTAGCCCAGCTCT < 41bp 1 0.445942726177877 1 0.427864342927933 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23656253 chr22:23656249 synonymous SNV . 0 17 hm5C_associated_SNPs_14585 0 0 1 0 2 BCR chr22:23656260 5'GT 23656260 Upstream 12bp
chr22 24106506 24106506 1 + G A rs143257161 24106499 + 24106479 24106519 41 CTAGTGAGCCTGGAGGAGGACCTGAAGGAAGGGGCTTCCCG CTAGTGAGCCTGGAGGAGGACCTGAAGAAAGGGGCTTCCCG < 41bp 1 0.412087891707691 1 0.0629083812236786 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C22orf15 ENSG00000169314 CDS Human protein_coding chr22:24106499 chr22:24106506 nonsynonymous SNV 0.034 3 28 hm5C_associated_SNPs_14586 0 0 0 0 3 C22orf15 chr22:24106447 3'AG 24106447 Downstream 60bp
chr22 24106506 24106506 1 + G A rs143257161 24106499 + 24106479 24106519 41 CTAGTGAGCCTGGAGGAGGACCTGAAGGAAGGGGCTTCCCG CTAGTGAGCCTGGAGGAGGACCTGAAGAAAGGGGCTTCCCG < 41bp 1 0.412087891707691 1 0.0629083812236786 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C22orf15 ENSG00000169314 CDS Human protein_coding chr22:24106499 chr22:24106506 nonsynonymous SNV 0.034 3 28 hm5C_associated_SNPs_14586 0 0 0 0 3 C22orf15 chr22:24106584 5'GT 24106584 Upstream 79bp
chr22 24106506 24106506 1 + G A rs143257161 24106499 + 24106479 24106519 41 CTAGTGAGCCTGGAGGAGGACCTGAAGGAAGGGGCTTCCCG CTAGTGAGCCTGGAGGAGGACCTGAAGAAAGGGGCTTCCCG < 41bp 1 0.412087891707691 1 0.0629083812236786 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C22orf15 ENSG00000169314 CDS Human protein_coding chr22:24106499 chr22:24106506 nonsynonymous SNV 0.034 3 28 hm5C_associated_SNPs_14586 0 0 0 0 3 C22orf15 chr22:24106599 5'GT 24106599 Upstream 94bp
chr22 24224655 24224655 1 + G A rs9608213 24224648 + 24224628 24224668 41 CCCTCCTCCCTGGCTCAGCACTACGGCGGCTCCGGGGCTCC CCCTCCTCCCTGGCTCAGCACTACGGCAGCTCCGGGGCTCC < 41bp 1 0.589850901559092 1 0.25772613286972 experiment 0.820298196881816 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24224648 chr22:24224655 nonsynonymous SNV 0.000 0 28 hm5C_associated_SNPs_14587 0 0 1 0 1 SLC2A11 chr22:24224646 3'AG 24224646 Downstream 10bp
chr22 24224659 24224659 1 + C A rs9612499 24224648 + 24224628 24224668 41 CCCTCCTCCCTGGCTCAGCACTACGGCGGCTCCGGGGCTCC CCCTCCTCCCTGGCTCAGCACTACGGCGGCTACGGGGCTCC < 41bp 1 0.613669904315448 1 0.179704993963242 experiment 0.772660191369103 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24224648 chr22:24224659 synonymous SNV . 0 32 hm5C_associated_SNPs_14588 0 0 1 0 1 SLC2A11 chr22:24224646 3'AG 24224646 Downstream 14bp
chr22 24224668 24224668 1 + C T rs368660150 24224648 + 24224628 24224668 41 CCCTCCTCCCTGGCTCAGCACTACGGCGGCTCCGGGGCTCC CCCTCCTCCCTGGCTCAGCACTACGGCGGCTCCGGGGCTCT < 41bp 1 0.567295991127801 1 0.289566934108734 experiment 0.865408017744398 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24224648 chr22:24224668 synonymous SNV . 0 41 hm5C_associated_SNPs_14589 0 0 1 0 1 SLC2A11 chr22:24224646 3'AG 24224646 Downstream 23bp
chr22 24226520 24226520 1 + G A rs36026871 24226534 + 24226514 24226554 41 AGAGCTGTTTGACCAGATGGCCAGGCCTGCTGCCTGCATGG AGAGCTATTTGACCAGATGGCCAGGCCTGCTGCCTGCATGG < 41bp 1 0.430472455576942 1 0.305373936891556 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24226534 chr22:24226520 synonymous SNV . 0 7 hm5C_associated_SNPs_14590 0 0 1 0 2 SLC2A11 chr22:24226489 3'AG 24226489 Downstream 32bp
chr22 24226520 24226520 1 + G A rs36026871 24226534 + 24226514 24226554 41 AGAGCTGTTTGACCAGATGGCCAGGCCTGCTGCCTGCATGG AGAGCTATTTGACCAGATGGCCAGGCCTGCTGCCTGCATGG < 41bp 1 0.430472455576942 1 0.305373936891556 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24226534 chr22:24226520 synonymous SNV . 0 7 hm5C_associated_SNPs_14590 0 0 1 0 2 SLC2A11 chr22:24226616 5'GT 24226616 Upstream 97bp
chr22 24237108 24237108 1 + G A rs201099096 24237096 + 24237076 24237116 41 TACAGCAAGCTGCTGTGCGGCCTGCTGGCCGAGCGCCTGCG TACAGCAAGCTGCTGTGCGGCCTGCTGGCCGAACGCCTGCG < 41bp 1 0.129238392743023 1 0.112756580114365 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237096 chr22:24237108 nonsynonymous SNV 0.973 0 33 hm5C_associated_SNPs_14591 0 0 1 0 1 MIF chr22:24237131 5'GT 24237131 Upstream 24bp
chr22 24237108 24237108 1 + G A rs201099096 24237109 + 24237089 24237129 41 TGTGCGGCCTGCTGGCCGAGCGCCTGCGCATCAGCCCGGAC TGTGCGGCCTGCTGGCCGAACGCCTGCGCATCAGCCCGGAC < 41bp 1 0.638250015727583 1 0.264285147190094 experiment 0.723499968544835 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237109 chr22:24237108 nonsynonymous SNV 0.973 0 20 hm5C_associated_SNPs_14592 0 0 1 0 1 MIF chr22:24237131 5'GT 24237131 Upstream 24bp
chr22 24237108 24237108 1 + G A rs201099096 24237117 + 24237097 24237137 41 CTGCTGGCCGAGCGCCTGCGCATCAGCCCGGACAGGTACGC CTGCTGGCCGAACGCCTGCGCATCAGCCCGGACAGGTACGC < 41bp 1 0.533758061951313 1 0.121350705623627 experiment 0.932483876097373 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237117 chr22:24237108 nonsynonymous SNV 0.973 0 12 hm5C_associated_SNPs_14593 0 0 1 0 1 MIF chr22:24237131 5'GT 24237131 Upstream 24bp
chr22 24237108 24237108 1 + G A rs201099096 24237120 + 24237100 24237140 41 CTGGCCGAGCGCCTGCGCATCAGCCCGGACAGGTACGCGGA CTGGCCGAACGCCTGCGCATCAGCCCGGACAGGTACGCGGA < 41bp 1 0.50926173819814 1 0.34735170006752 experiment 0.98147652360372 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237120 chr22:24237108 nonsynonymous SNV 0.973 0 9 hm5C_associated_SNPs_14594 0 0 1 0 1 MIF chr22:24237131 5'GT 24237131 Upstream 24bp
chr22 24237112 24237112 1 + C T rs34733430 24237096 + 24237076 24237116 41 TACAGCAAGCTGCTGTGCGGCCTGCTGGCCGAGCGCCTGCG TACAGCAAGCTGCTGTGCGGCCTGCTGGCCGAGCGCTTGCG < 41bp 1 0.112299141715016 1 0.0952074825763702 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237096 chr22:24237112 synonymous SNV . 0 37 hm5C_associated_SNPs_14595 0 0 1 0 1 MIF chr22:24237131 5'GT 24237131 Upstream 20bp
chr22 24237112 24237112 1 + C T rs34733430 24237109 + 24237089 24237129 41 TGTGCGGCCTGCTGGCCGAGCGCCTGCGCATCAGCCCGGAC TGTGCGGCCTGCTGGCCGAGCGCTTGCGCATCAGCCCGGAC < 41bp 1 0.394429777111567 1 0.072258323431015 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237109 chr22:24237112 synonymous SNV . 0 24 hm5C_associated_SNPs_14596 0 0 1 0 1 MIF chr22:24237131 5'GT 24237131 Upstream 20bp
chr22 24237112 24237112 1 + C T rs34733430 24237117 + 24237097 24237137 41 CTGCTGGCCGAGCGCCTGCGCATCAGCCCGGACAGGTACGC CTGCTGGCCGAGCGCTTGCGCATCAGCCCGGACAGGTACGC < 41bp 1 0.615103551641546 1 0.255634903907776 experiment 0.769792896716908 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237117 chr22:24237112 synonymous SNV . 0 16 hm5C_associated_SNPs_14597 0 0 1 0 1 MIF chr22:24237131 5'GT 24237131 Upstream 20bp
chr22 24237112 24237112 1 + C T rs34733430 24237120 + 24237100 24237140 41 CTGGCCGAGCGCCTGCGCATCAGCCCGGACAGGTACGCGGA CTGGCCGAGCGCTTGCGCATCAGCCCGGACAGGTACGCGGA < 41bp 1 0.560770782883328 1 0.28345662355423 experiment 0.878458434233344 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237120 chr22:24237112 synonymous SNV . 0 13 hm5C_associated_SNPs_14598 0 0 1 0 1 MIF chr22:24237131 5'GT 24237131 Upstream 20bp
chr22 24325095 24325095 1 + A C rs140195 24325093 + 24325073 24325113 41 ACTCATTGGGGTCCAGGTGCCCAAGGAGAAGGTGGAACGCA ACTCATTGGGGTCCAGGTGCCCCAGGAGAAGGTGGAACGCA < 41bp 1 0.483762391499157 1 0.129829615354538 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GSTT2;GSTT2B ENSG00000099984 CDS Human polymorphic_pseudogene chr22:24325093 chr22:24325095 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_14607 0 0 0 0 2 GSTT2;GSTT2B chr22:24325062 3'AG 24325062 Downstream 34bp
chr22 24325095 24325095 1 + A C rs140195 24325093 + 24325073 24325113 41 ACTCATTGGGGTCCAGGTGCCCAAGGAGAAGGTGGAACGCA ACTCATTGGGGTCCAGGTGCCCCAGGAGAAGGTGGAACGCA < 41bp 1 0.483762391499157 1 0.129829615354538 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GSTT2;GSTT2B ENSG00000099984 CDS Human polymorphic_pseudogene chr22:24325093 chr22:24325095 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_14607 0 0 0 0 2 GSTT2;GSTT2B chr22:24325193 5'GT 24325193 Upstream 99bp
chr22 24325095 24325095 1 + A C rs140195 24325094 + 24325074 24325114 41 CTCATTGGGGTCCAGGTGCCCAAGGAGAAGGTGGAACGCAA CTCATTGGGGTCCAGGTGCCCCAGGAGAAGGTGGAACGCAA < 41bp 1 0.548675578379248 1 0.709616899490356 experiment 0.902648843241504 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GSTT2;GSTT2B ENSG00000099984 CDS Human polymorphic_pseudogene chr22:24325094 chr22:24325095 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_14608 0 0 0 0 2 GSTT2;GSTT2B chr22:24325062 3'AG 24325062 Downstream 34bp
chr22 24325095 24325095 1 + A C rs140195 24325094 + 24325074 24325114 41 CTCATTGGGGTCCAGGTGCCCAAGGAGAAGGTGGAACGCAA CTCATTGGGGTCCAGGTGCCCCAGGAGAAGGTGGAACGCAA < 41bp 1 0.548675578379248 1 0.709616899490356 experiment 0.902648843241504 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GSTT2;GSTT2B ENSG00000099984 CDS Human polymorphic_pseudogene chr22:24325094 chr22:24325095 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_14608 0 0 0 0 2 GSTT2;GSTT2B chr22:24325193 5'GT 24325193 Upstream 99bp
chr22 24468448 24468448 1 + C T rs142541555 24468439 + 24468419 24468459 41 CTCTGTGCCACCAGCAGCAGCTCCAAAACCCAGCGGAGGAA CTCTGTGCCACCAGCAGCAGCTCCAAAACTCAGCGGAGGAA < 41bp 1 0.35668123214321 1 0.862331748008728 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24468439 chr22:24468448 nonsynonymous SNV 0.996 0 30 hm5C_associated_SNPs_14609 0 0 1 0 1 CABIN1 chr22:24468460 5'GT 24468460 Upstream 13bp
chr22 25042997 25042997 1 + C T rs574009726 25042991 + 25042971 25043011 41 AGAGAGAGGTCCAAGGTGCCCTACATCATGCGCCAGTGCGT AGAGAGAGGTCCAAGGTGCCCTACATTATGCGCCAGTGCGT < 41bp 1 0.741255309306025 1 0.438708901405334 experiment 0.517489381387951 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BCRP3;POM121L10P ENSG00000215481;ENSG00000224124 ncRNA_exonic Human other chr22:25042991 chr22:25042997 . . 0 27 hm5C_associated_SNPs_14616 0 0 0 0 2 BCRP3;POM121L10P chr22:25042970 3'AG 25042970 Downstream 28bp
chr22 25042997 25042997 1 + C T rs574009726 25042991 + 25042971 25043011 41 AGAGAGAGGTCCAAGGTGCCCTACATCATGCGCCAGTGCGT AGAGAGAGGTCCAAGGTGCCCTACATTATGCGCCAGTGCGT < 41bp 1 0.741255309306025 1 0.438708901405334 experiment 0.517489381387951 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BCRP3;POM121L10P ENSG00000215481;ENSG00000224124 ncRNA_exonic Human other chr22:25042991 chr22:25042997 . . 0 27 hm5C_associated_SNPs_14616 0 0 0 0 2 BCRP3;POM121L10P chr22:25043042 5'GT 25043042 Upstream 46bp
chr22 25042998 25042998 1 + A G rs78843379 25042991 + 25042971 25043011 41 AGAGAGAGGTCCAAGGTGCCCTACATCATGCGCCAGTGCGT AGAGAGAGGTCCAAGGTGCCCTACATCGTGCGCCAGTGCGT < 41bp 1 0.709642940459307 1 0.249620765447617 experiment 0.580714119081385 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BCRP3;POM121L10P ENSG00000215481;ENSG00000224124 ncRNA_exonic Human other chr22:25042991 chr22:25042998 . . 0 28 hm5C_associated_SNPs_14617 0 0 0 0 2 BCRP3;POM121L10P chr22:25042970 3'AG 25042970 Downstream 29bp
chr22 25042998 25042998 1 + A G rs78843379 25042991 + 25042971 25043011 41 AGAGAGAGGTCCAAGGTGCCCTACATCATGCGCCAGTGCGT AGAGAGAGGTCCAAGGTGCCCTACATCGTGCGCCAGTGCGT < 41bp 1 0.709642940459307 1 0.249620765447617 experiment 0.580714119081385 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BCRP3;POM121L10P ENSG00000215481;ENSG00000224124 ncRNA_exonic Human other chr22:25042991 chr22:25042998 . . 0 28 hm5C_associated_SNPs_14617 0 0 0 0 2 BCRP3;POM121L10P chr22:25043042 5'GT 25043042 Upstream 45bp
chr22 25570273 25570273 1 + G A rs5760891 25570257 + 25570237 25570277 41 CACATCGACAAGGAAACAGCCCCCCAGCAGCCGTTTGTCTT CACATCGACAAGGAAACAGCCCCCCAGCAGCCGTTTATCTT < 41bp 1 0.0373771936197011 1 0.0323333144187927 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KIAA1671 ENSG00000197077 CDS Human protein_coding chr22:25570257 chr22:25570273 synonymous SNV . 0 37 hm5C_associated_SNPs_14618 0 0 0 0 1 KIAA1671 chr22:25570207 3'AG 25570207 Downstream 67bp
chr22 25570285 25570285 1 + C T rs56351192 25570299 + 25570279 25570319 41 TCTGTCCTCCCAAACGGAGCCCACCTCGGCAGGGGACCAGT TCTGTCTTCCCAAACGGAGCCCACCTCGGCAGGGGACCAGT < 41bp 1 0.0284432098056824 1 0.0685781240463257 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1671 ENSG00000197077 CDS Human protein_coding chr22:25570299 chr22:25570285 synonymous SNV . 0 7 hm5C_associated_SNPs_14619 0 0 1 0 1 KIAA1671 chr22:25570207 3'AG 25570207 Downstream 79bp
chr22 26242229 26242229 1 + C T rs2859407 26242222 + 26242202 26242242 41 TGCCGCGGTGAGGAGGAAAGCCCCGTGCTCCCAGATCAAGC TGCCGCGGTGAGGAGGAAAGCCCCGTGTTCCCAGATCAAGC < 41bp 1 0.290013215205033 1 0.162285357713699 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26242222 chr22:26242229 synonymous SNV . 0 28 hm5C_associated_SNPs_14620 0 0 0 0 1 MYO18B chr22:26242250 5'GT 26242250 Upstream 22bp
chr22 26291145 26291145 1 + C T rs118112071 26291140 + 26291120 26291160 41 CAGCAGACGAGTGGCAGATGCGCTTCGACTGTGCTCAGATG CAGCAGACGAGTGGCAGATGCGCTTTGACTGTGCTCAGATG < 41bp 1 0.123594414615821 1 0.3464615046978 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26291140 chr22:26291145 synonymous SNV . 0 26 hm5C_associated_SNPs_14621 0 0 1 0 2 MYO18B chr22:26291123 3'AG 26291123 Downstream 23bp
chr22 26291145 26291145 1 + C T rs118112071 26291140 + 26291120 26291160 41 CAGCAGACGAGTGGCAGATGCGCTTCGACTGTGCTCAGATG CAGCAGACGAGTGGCAGATGCGCTTTGACTGTGCTCAGATG < 41bp 1 0.123594414615821 1 0.3464615046978 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26291140 chr22:26291145 synonymous SNV . 0 26 hm5C_associated_SNPs_14621 0 0 1 0 2 MYO18B chr22:26291126 3'AG 26291126 Downstream 20bp
chr22 29664281 29664281 1 + C A rs111892587 29664296 + 29664276 29664316 41 GAAAGCGAGAGGGAGACGGACGTTGAGAGAACGAGGAGGAA GAAAGAGAGAGGGAGACGGACGTTGAGAGAACGAGGAGGAA < 41bp 1 0.306083190378327 1 0.154985696077347 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 UTR5 Human protein_coding chr22:29664296 chr22:29664281 . . 0 6 hm5C_associated_SNPs_14631 0 0 1 0 1 EWSR1 chr22:29664338 5'GT 29664338 Upstream 58bp
chr22 29695761 29695761 1 + C T rs111270799 29695781 + 29695761 29695801 41 CCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG TCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG < 41bp 1 0.440743109158907 1 0.225459575653076 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695781 chr22:29695761 synonymous SNV . 0 1 hm5C_associated_SNPs_14632 0 0 1 0 1 EWSR1 chr22:29695841 5'GT 29695841 Upstream 81bp
chr22 30403307 30403307 1 + C T rs146523702 30403290 + 30403270 30403310 41 ACTTTCCCAATGGGGGAGACCTTTCTGACGTGGAGTTCGGT ACTTTCCCAATGGGGGAGACCTTTCTGACGTGGAGTTTGGT < 41bp 1 0.0201170213807065 1 0.0582224130630493 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MTMR3 ENSG00000100330 CDS Human protein_coding chr22:30403290 chr22:30403307 synonymous SNV . 0 38 hm5C_associated_SNPs_14633 0 0 0 0 1 MTMR3 chr22:30403308 5'GT 30403308 Upstream 2bp
chr22 31998612 31998612 1 + G A rs2006771 31998614 + 31998594 31998634 41 CCATCCTTCACGCAGAGCGACAGCTTCTGTATAGGTCTTGG CCATCCTTCACGCAGAGCAACAGCTTCTGTATAGGTCTTGG < 41bp 1 0.219200987718247 1 0.184147715568542 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SFI1 ENSG00000198089 CDS Human protein_coding chr22:31998614 chr22:31998612 nonsynonymous SNV 0.313 0 19 hm5C_associated_SNPs_14641 0 1 0 0 1 SFI1 chr22:31998593 3'AG 31998593 Downstream 20bp
chr22 32174124 32174124 1 + C T rs558913954 32174133 + 32174113 32174153 41 AATGAGAAGGTCATGTGTGGCTACATCAGTGAAGATACCAG AATGAGAAGGTTATGTGTGGCTACATCAGTGAAGATACCAG < 41bp 1 0.459168788039121 1 0.84168815612793 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32174133 chr22:32174124 synonymous SNV . 0 12 hm5C_associated_SNPs_14642 1 0 1 0 1 DEPDC5 chr22:32174085 3'AG 32174085 Downstream 40bp
chr22 32234797 32234797 1 + G A rs61731664 32234816 + 32234796 32234836 41 CGCCCCCGCTGAGCAGTAGCCCACTCTATAGCCGAGGTGAG CACCCCCGCTGAGCAGTAGCCCACTCTATAGCCGAGGTGAG < 41bp 1 0.133662296857845 1 0.0595917999744415 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32234816 chr22:32234797 synonymous SNV . 0 2 hm5C_associated_SNPs_14643 2 0 0 0 1 DEPDC5 chr22:32234831 5'GT 32234831 Upstream 35bp
chr22 32270378 32270378 1 + T C rs200653339 32270365 + 32270345 32270385 41 ACGTGGAGGGGATCCAGACACAGGCGATGGCCATTGACATC ACGTGGAGGGGATCCAGACACAGGCGATGGCCACTGACATC < 41bp 1 0.792665507055749 1 0.797414898872375 experiment 0.414668985888503 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32270365 chr22:32270378 nonsynonymous SNV 0.993 0 34 hm5C_associated_SNPs_14644 1 0 1 0 1 DEPDC5 chr22:32270391 5'GT 32270391 Upstream 14bp
chr22 32889249 32889249 1 + A G rs147911892 32889253 + 32889233 32889273 41 TCCTGTGGAGGTTTTTATATCTGCGTGATTTTCGAGGTGAT TCCTGTGGAGGTTTTTGTATCTGCGTGATTTTCGAGGTGAT < 41bp 1 0.547177859671872 1 0.289457559585571 experiment 0.905644280656256 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32889253 chr22:32889249 synonymous SNV . 0 17 hm5C_associated_SNPs_14646 1 0 1 0 1 FBXO7 chr22:32889268 5'GT 32889268 Upstream 20bp
chr22 35653490 35653490 1 + C G rs572271261 35653508 + 35653488 35653528 41 CTCCTTCTCCAAGATGGCGGCGATCGGCGGCGTTGAGGCGG CTGCTTCTCCAAGATGGCGGCGATCGGCGGCGTTGAGGCGG < 41bp 1 0.29597252180207 1 0.3313148021698 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMGXB4 ENSG00000100281 UTR5 Human protein_coding chr22:35653508 chr22:35653490 . . 0 3 hm5C_associated_SNPs_14648 0 0 1 0 1 HMGXB4 chr22:35653550 5'GT 35653550 Upstream 61bp
chr22 35653521 35653521 1 + T A rs554503605 35653508 + 35653488 35653528 41 CTCCTTCTCCAAGATGGCGGCGATCGGCGGCGTTGAGGCGG CTCCTTCTCCAAGATGGCGGCGATCGGCGGCGTAGAGGCGG < 41bp 1 0.264231753012703 1 0.317162930965424 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMGXB4 ENSG00000100281 UTR5 Human protein_coding chr22:35653508 chr22:35653521 . . 0 34 hm5C_associated_SNPs_14649 0 0 1 0 1 HMGXB4 chr22:35653550 5'GT 35653550 Upstream 30bp
chr22 37962126 37962126 1 + T A rs138215550 37962123 + 37962103 37962143 41 TGCCGACCACCTCGGGGGTGCTTTCTCTGCGCTTGAACATC TGCCGACCACCTCGGGGGTGCTTACTCTGCGCTTGAACATC < 41bp 1 0.037170168494517 1 0.0349476635456085 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CDC42EP1 ENSG00000128283 UTR5 Human protein_coding chr22:37962123 chr22:37962126 . . 0 24 hm5C_associated_SNPs_14669 0 0 1 0 1 CDC42EP1 chr22:37962079 3'AG 37962079 Downstream 48bp
chr22 38021889 38021889 1 + C T rs147657157 38021903 + 38021883 38021923 41 CCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAG CCCTGGTGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAG < 41bp 1 0.639292278616606 1 0.0991578996181488 experiment 0.721415442766788 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38021903 chr22:38021889 synonymous SNV . 0 7 hm5C_associated_SNPs_14671 0 0 1 0 2 GGA1 chr22:38021804 3'AG 38021804 Downstream 86bp
chr22 38021889 38021889 1 + C T rs147657157 38021903 + 38021883 38021923 41 CCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAG CCCTGGTGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAG < 41bp 1 0.639292278616606 1 0.0991578996181488 experiment 0.721415442766788 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38021903 chr22:38021889 synonymous SNV . 0 7 hm5C_associated_SNPs_14671 0 0 1 0 2 GGA1 chr22:38021956 5'GT 38021956 Upstream 68bp
chr22 38028073 38028073 1 + A G rs12170061 38028074 + 38028054 38028094 41 TCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTG TCCATTTTGCCCGGGACCCGCTGCCAGGGCGCTCCGACGTG < 41bp 1 0.361846852201944 1 0.070324182510376 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38028074 chr22:38028073 synonymous SNV . 0 20 hm5C_associated_SNPs_14672 0 0 1 0 2 GGA1 chr22:38028003 3'AG 38028003 Downstream 71bp
chr22 38028073 38028073 1 + A G rs12170061 38028074 + 38028054 38028094 41 TCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTG TCCATTTTGCCCGGGACCCGCTGCCAGGGCGCTCCGACGTG < 41bp 1 0.361846852201944 1 0.070324182510376 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38028074 chr22:38028073 synonymous SNV . 0 20 hm5C_associated_SNPs_14672 0 0 1 0 2 GGA1 chr22:38028172 5'GT 38028172 Upstream 100bp
chr22 38028076 38028076 1 + G T rs193147072 38028074 + 38028054 38028094 41 TCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTG TCCATTTTGCCCGGGACCCACTTCCAGGGCGCTCCGACGTG < 41bp 1 0.157977999951002 1 0.0561263561248779 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38028074 chr22:38028076 synonymous SNV . 0 23 hm5C_associated_SNPs_14673 0 0 1 0 2 GGA1 chr22:38028003 3'AG 38028003 Downstream 74bp
chr22 38028076 38028076 1 + G T rs193147072 38028074 + 38028054 38028094 41 TCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTG TCCATTTTGCCCGGGACCCACTTCCAGGGCGCTCCGACGTG < 41bp 1 0.157977999951002 1 0.0561263561248779 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38028074 chr22:38028076 synonymous SNV . 0 23 hm5C_associated_SNPs_14673 0 0 1 0 2 GGA1 chr22:38028172 5'GT 38028172 Upstream 97bp
chr22 38313787 38313787 1 + A T rs140198916 38313800 + 38313780 38313820 41 TGGAACCAGAAGATGTGGCTCAGGTAGGCAGATACCTGGAG TGGAACCTGAAGATGTGGCTCAGGTAGGCAGATACCTGGAG < 41bp 1 0.582809578700551 1 0.413079082965851 experiment 0.834380842598899 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38313800 chr22:38313787 synonymous SNV . 0 8 hm5C_associated_SNPs_14687 0 0 1 0 2 MICALL1 chr22:38313714 3'AG 38313714 Downstream 74bp
chr22 38313787 38313787 1 + A T rs140198916 38313800 + 38313780 38313820 41 TGGAACCAGAAGATGTGGCTCAGGTAGGCAGATACCTGGAG TGGAACCTGAAGATGTGGCTCAGGTAGGCAGATACCTGGAG < 41bp 1 0.582809578700551 1 0.413079082965851 experiment 0.834380842598899 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38313800 chr22:38313787 synonymous SNV . 0 8 hm5C_associated_SNPs_14687 0 0 1 0 2 MICALL1 chr22:38313802 5'GT 38313802 Upstream 16bp
chr22 39125529 39125529 1 + G A rs16999301 39125541 + 39125521 39125561 41 ATGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGA ATGCAGTCAACGAAAAAGGGCCCCCTGACGAAACGAGACGA < 41bp 1 0.0355063153175352 1 0.127729505300522 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125541 chr22:39125529 synonymous SNV . 0 9 hm5C_associated_SNPs_14692 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 63bp
chr22 39125529 39125529 1 + G A rs16999301 39125542 + 39125522 39125562 41 TGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAG TGCAGTCAACGAAAAAGGGCCCCCTGACGAAACGAGACGAG < 41bp 1 0.0506123897305643 1 0.216477543115616 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125542 chr22:39125529 synonymous SNV . 0 8 hm5C_associated_SNPs_14693 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 63bp
chr22 39125529 39125529 1 + G A rs16999301 39125543 + 39125523 39125563 41 GCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGG GCAGTCAACGAAAAAGGGCCCCCTGACGAAACGAGACGAGG < 41bp 1 0.0293653550419287 1 0.201823383569717 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125543 chr22:39125529 synonymous SNV . 0 7 hm5C_associated_SNPs_14694 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 63bp
chr22 39125529 39125529 1 + G A rs16999301 39125544 + 39125524 39125564 41 CAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGG CAGTCAACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGG < 41bp 1 0.0856763131242929 1 0.168945282697678 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125544 chr22:39125529 synonymous SNV . 0 6 hm5C_associated_SNPs_14695 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 63bp
chr22 39125529 39125529 1 + G A rs16999301 39125545 + 39125525 39125565 41 AGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGGG AGTCAACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGGG < 41bp 1 0.15430576366866 1 0.398516118526459 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125545 chr22:39125529 synonymous SNV . 0 5 hm5C_associated_SNPs_14696 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 63bp
chr22 39125549 39125549 1 + C A rs75211829 39125541 + 39125521 39125561 41 ATGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGA ATGCAGTCGACGAAAAAGGGCCCCCTGAAGAAACGAGACGA < 41bp 1 0.0487869222395039 1 0.158724218606949 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125541 chr22:39125549 nonsynonymous SNV 0.675 0 29 hm5C_associated_SNPs_14697 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 83bp
chr22 39125549 39125549 1 + C A rs75211829 39125542 + 39125522 39125562 41 TGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAG TGCAGTCGACGAAAAAGGGCCCCCTGAAGAAACGAGACGAG < 41bp 1 0.0525257183098508 1 0.285941660404205 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125542 chr22:39125549 nonsynonymous SNV 0.675 0 28 hm5C_associated_SNPs_14698 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 83bp
chr22 39125549 39125549 1 + C A rs75211829 39125543 + 39125523 39125563 41 GCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGG GCAGTCGACGAAAAAGGGCCCCCTGAAGAAACGAGACGAGG < 41bp 1 0.0306740625693296 1 0.149678438901901 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125543 chr22:39125549 nonsynonymous SNV 0.675 0 27 hm5C_associated_SNPs_14699 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 83bp
chr22 39125549 39125549 1 + C A rs75211829 39125544 + 39125524 39125564 41 CAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGG CAGTCGACGAAAAAGGGCCCCCTGAAGAAACGAGACGAGGG < 41bp 1 0.0946286143143576 1 0.193418979644775 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125544 chr22:39125549 nonsynonymous SNV 0.675 0 26 hm5C_associated_SNPs_14700 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 83bp
chr22 39125549 39125549 1 + C A rs75211829 39125545 + 39125525 39125565 41 AGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGGG AGTCGACGAAAAAGGGCCCCCTGAAGAAACGAGACGAGGGG < 41bp 1 0.524015331940369 1 0.495146334171295 experiment 0.951969336119262 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125545 chr22:39125549 nonsynonymous SNV 0.675 0 25 hm5C_associated_SNPs_14701 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 83bp
chr22 39125549 39125549 1 + C A rs75211829 39125568 + 39125548 39125588 41 ACGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGT AAGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGT < 41bp 1 0.119455193311462 1 0.164951592683792 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125568 chr22:39125549 nonsynonymous SNV 0.675 0 2 hm5C_associated_SNPs_14702 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 83bp
chr22 39125549 39125549 1 + C A rs75211829 39125569 + 39125549 39125589 41 CGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTA AGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTA < 41bp 1 0.0431766576375635 1 0.455005764961243 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125569 chr22:39125549 nonsynonymous SNV 0.675 0 1 hm5C_associated_SNPs_14703 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 83bp
chr22 39125559 39125559 1 + C T rs140918933 39125541 + 39125521 39125561 41 ATGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGA ATGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGATGA < 41bp 1 0.0418436403848617 1 0.106825023889542 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125541 chr22:39125559 synonymous SNV . 0 39 hm5C_associated_SNPs_14704 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 93bp
chr22 39125559 39125559 1 + C T rs140918933 39125542 + 39125522 39125562 41 TGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAG TGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGATGAG < 41bp 1 0.048835758389172 1 0.269602119922638 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125542 chr22:39125559 synonymous SNV . 0 38 hm5C_associated_SNPs_14705 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 93bp
chr22 39125559 39125559 1 + C T rs140918933 39125543 + 39125523 39125563 41 GCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGG GCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGATGAGG < 41bp 1 0.0227002091834639 1 0.101267278194427 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125543 chr22:39125559 synonymous SNV . 0 37 hm5C_associated_SNPs_14706 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 93bp
chr22 39125559 39125559 1 + C T rs140918933 39125544 + 39125524 39125564 41 CAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGG CAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGATGAGGG < 41bp 1 0.0700223048144014 1 0.175634503364563 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125544 chr22:39125559 synonymous SNV . 0 36 hm5C_associated_SNPs_14707 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 93bp
chr22 39125559 39125559 1 + C T rs140918933 39125545 + 39125525 39125565 41 AGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGGG AGTCGACGAAAAAGGGCCCCCTGACGAAACGAGATGAGGGG < 41bp 1 0.15560195645457 1 0.379955768585205 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125545 chr22:39125559 synonymous SNV . 0 35 hm5C_associated_SNPs_14708 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 93bp
chr22 39125559 39125559 1 + C T rs140918933 39125568 + 39125548 39125588 41 ACGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGT ACGAAACGAGATGAGGGGGGCCCGTCTGGTGGGCCAGCAGT < 41bp 1 0.11739395111363 1 0.194928795099258 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125568 chr22:39125559 synonymous SNV . 0 12 hm5C_associated_SNPs_14709 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 93bp
chr22 39125559 39125559 1 + C T rs140918933 39125569 + 39125549 39125589 41 CGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTA CGAAACGAGATGAGGGGGGCCCGTCTGGTGGGCCAGCAGTA < 41bp 1 0.0404288958450286 1 0.366273701190948 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125569 chr22:39125559 synonymous SNV . 0 11 hm5C_associated_SNPs_14710 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 93bp
chr22 39125559 39125559 1 + C T rs140918933 39125570 + 39125550 39125590 41 GAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTAG GAAACGAGATGAGGGGGGCCCGTCTGGTGGGCCAGCAGTAG < 41bp 1 0.165752529569036 1 0.34943625330925 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125570 chr22:39125559 synonymous SNV . 0 10 hm5C_associated_SNPs_14711 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 93bp
chr22 39382376 39382376 1 + A C rs144209680 39382388 + 39382368 39382408 41 TTCGATGAAAATTATGCATTCCTGCACCGCACGCTAAAGGA TTCGATGACAATTATGCATTCCTGCACCGCACGCTAAAGGA < 41bp 1 0.065979247668163 1 0.111108988523483 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control APOBEC3B ENSG00000179750 CDS Human protein_coding chr22:39382388 chr22:39382376 nonsynonymous SNV 0.000 0 9 hm5C_associated_SNPs_14713 0 0 0 0 2 APOBEC3B chr22:39382303 3'AG 39382303 Downstream 74bp
chr22 39382376 39382376 1 + A C rs144209680 39382388 + 39382368 39382408 41 TTCGATGAAAATTATGCATTCCTGCACCGCACGCTAAAGGA TTCGATGACAATTATGCATTCCTGCACCGCACGCTAAAGGA < 41bp 1 0.065979247668163 1 0.111108988523483 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control APOBEC3B ENSG00000179750 CDS Human protein_coding chr22:39382388 chr22:39382376 nonsynonymous SNV 0.000 0 9 hm5C_associated_SNPs_14713 0 0 0 0 2 APOBEC3B chr22:39382417 5'GT 39382417 Upstream 42bp
chr22 39440149 39440149 1 + C T rs5750728 39440154 + 39440134 39440174 41 CCTTTGGCCAGTGCGCCCCACCACATGGGACAGCGCAGGTC CCTTTGGCCAGTGCGTCCCACCACATGGGACAGCGCAGGTC < 41bp 1 0.413905256274933 1 0.451896727085114 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APOBEC3F ENSG00000128394 CDS Human protein_coding chr22:39440154 chr22:39440149 nonsynonymous SNV 0.000 0 16 hm5C_associated_SNPs_14717 0 0 0 0 1 APOBEC3F chr22:39440088 3'AG 39440088 Downstream 62bp
chr22 39824067 39824067 1 + A G rs571848544 39824063 + 39824043 39824083 41 TACCCTGTGTCTGTGCCATACTCCAGCGCCCAGAGCACCAG TACCCTGTGTCTGTGCCATACTCCGGCGCCCAGAGCACCAG < 41bp 1 0.649326958589066 1 0.67633455991745 experiment 0.701346082821868 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control TAB1 ENSG00000100324 CDS Human protein_coding chr22:39824063 chr22:39824067 nonsynonymous SNV 0.939 1 25 hm5C_associated_SNPs_14718 0 0 0 0 1 TAB1 chr22:39824026 3'AG 39824026 Downstream 42bp
chr22 39826104 39826104 1 + C T rs118150487 39826113 + 39826093 39826133 41 CTCTTCCGCTCCCGGCCCGCCCACTCGCTCCCGCCTGGCGA CTCTTCCGCTCTCGGCCCGCCCACTCGCTCCCGCCTGGCGA < 41bp 1 0.0837988798479917 1 0.174546778202057 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TAB1 ENSG00000100324 CDS Human protein_coding chr22:39826113 chr22:39826104 synonymous SNV . 0 12 hm5C_associated_SNPs_14719 0 0 1 0 1 TAB1 chr22:39826020 3'AG 39826020 Downstream 85bp
chr22 40666230 40666230 1 + T C rs140403953 40666231 + 40666211 40666251 41 GATGGATGATACAGGAGCATCGACCACAGGCTGGGGGAACA GATGGATGATACAGGAGCACCGACCACAGGCTGGGGGAACA < 41bp 1 0.106910173558365 1 0.207427561283112 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40666231 chr22:40666230 nonsynonymous SNV 0.996 0 20 hm5C_associated_SNPs_14726 0 0 0 0 1 TNRC6B chr22:40666284 5'GT 40666284 Upstream 55bp
chr22 40766641 40766641 1 + G C rs373242180 40766625 + 40766605 40766645 41 CGCTTAGGCGCCGCTGAGCGCTGACTGGGTGCGAGTGGGGA CGCTTAGGCGCCGCTGAGCGCTGACTGGGTGCGAGTCGGGA < 41bp 1 0.309037928317066 1 0.109442472457886 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SGSM3 ENSG00000100359 UTR5 Human protein_coding chr22:40766625 chr22:40766641 . . 0 37 hm5C_associated_SNPs_14729 0 0 1 0 1 SGSM3 chr22:40766692 5'GT 40766692 Upstream 52bp
chr22 40801787 40801787 1 + G C rs141654422 40801785 + 40801765 40801805 41 TCCAGACTGACCAGCGGGTCCTGCGCCACCTCATTGTCCAG TCCAGACTGACCAGCGGGTCCTCCGCCACCTCATTGTCCAG < 41bp 1 0.486022389478275 1 0.117133915424347 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40801785 chr22:40801787 synonymous SNV . 0 23 hm5C_associated_SNPs_14730 0 0 1 0 1 SGSM3 chr22:40801848 5'GT 40801848 Upstream 62bp
chr22 42280866 42280866 1 + G A rs372911487 42280873 + 42280853 42280893 41 TCCTGCAGGATCCGCCTGTTCCGATGTACACATGGCGTTGT TCCTGCAGGATCCACCTGTTCCGATGTACACATGGCGTTGT < 41bp 1 0.268701263147844 1 0.12119260430336 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42280873 chr22:42280866 nonsynonymous SNV 0.891 1 14 hm5C_associated_SNPs_14738 0 0 1 0 1 SREBF2 chr22:42280846 3'AG 42280846 Downstream 21bp
chr22 42280889 42280889 1 + G A rs112435452 42280873 + 42280853 42280893 41 TCCTGCAGGATCCGCCTGTTCCGATGTACACATGGCGTTGT TCCTGCAGGATCCGCCTGTTCCGATGTACACATGGCATTGT < 41bp 1 0.293421927794687 1 0.170181632041931 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42280873 chr22:42280889 synonymous SNV . 0 37 hm5C_associated_SNPs_14739 0 0 1 0 1 SREBF2 chr22:42280846 3'AG 42280846 Downstream 44bp
chr22 44332974 44332974 1 + A C rs78730442 44332984 + 44332964 44333004 41 CATCCTCAGAAGGGATGGATCCTGAGGTCGCCATGCCCAGC CATCCTCAGACGGGATGGATCCTGAGGTCGCCATGCCCAGC < 41bp 1 0.625890002541243 1 0.168259799480438 experiment 0.748219994917514 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44332984 chr22:44332974 nonsynonymous SNV 0.000 0 11 hm5C_associated_SNPs_14769 0 0 1 0 1 PNPLA3 chr22:44332931 3'AG 44332931 Downstream 44bp
chr22 44368122 44368122 1 + A G rs3761472 44368123 + 44368103 44368143 41 TTTTTTTATTTAGGTGATGACGCACTTCCAAATGGGTTAGA TTTTTTTATTTAGGTGATGGCGCACTTCCAAATGGGTTAGA < 41bp 1 0.153855776742277 1 0.280539929866791 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44368123 chr22:44368122 nonsynonymous SNV 0.947 1 20 hm5C_associated_SNPs_14771 0 0 1 0 1 SAMM50 chr22:44368116 3'AG 44368116 Downstream 7bp
chr22 44379822 44379822 1 + T A rs10452 44379837 + 44379817 44379857 41 TACCTTGGGGGACCCACAAGCATCCGCGGATTCAGCATGCA TACCTAGGGGGACCCACAAGCATCCGCGGATTCAGCATGCA < 41bp 1 0.257224795239533 1 0.382186859846115 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44379837 chr22:44379822 synonymous SNV . 0 6 hm5C_associated_SNPs_14772 0 0 1 0 2 SAMM50 chr22:44379813 3'AG 44379813 Downstream 10bp
chr22 44379822 44379822 1 + T A rs10452 44379837 + 44379817 44379857 41 TACCTTGGGGGACCCACAAGCATCCGCGGATTCAGCATGCA TACCTAGGGGGACCCACAAGCATCCGCGGATTCAGCATGCA < 41bp 1 0.257224795239533 1 0.382186859846115 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44379837 chr22:44379822 synonymous SNV . 0 6 hm5C_associated_SNPs_14772 0 0 1 0 2 SAMM50 chr22:44379880 5'GT 44379880 Upstream 59bp
chr22 44379838 44379838 1 + A G rs8418 44379837 + 44379817 44379857 41 TACCTTGGGGGACCCACAAGCATCCGCGGATTCAGCATGCA TACCTTGGGGGACCCACAAGCGTCCGCGGATTCAGCATGCA < 41bp 1 0.290353330030933 1 0.526887118816376 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44379837 chr22:44379838 nonsynonymous SNV 0.006 0 22 hm5C_associated_SNPs_14773 0 0 1 0 2 SAMM50 chr22:44379813 3'AG 44379813 Downstream 26bp
chr22 44379838 44379838 1 + A G rs8418 44379837 + 44379817 44379857 41 TACCTTGGGGGACCCACAAGCATCCGCGGATTCAGCATGCA TACCTTGGGGGACCCACAAGCGTCCGCGGATTCAGCATGCA < 41bp 1 0.290353330030933 1 0.526887118816376 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44379837 chr22:44379838 nonsynonymous SNV 0.006 0 22 hm5C_associated_SNPs_14773 0 0 1 0 2 SAMM50 chr22:44379880 5'GT 44379880 Upstream 43bp
chr22 44547379 44547379 1 + T C rs113622568 44547390 + 44547370 44547410 41 TCACTTTTGTGAACAAGCACCTGAACAAGCTGAATTTGGAG TCACTTTTGCGAACAAGCACCTGAACAAGCTGAATTTGGAG < 41bp 1 0.246428950110806 1 0.400147914886475 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PARVB ENSG00000188677 CDS Human protein_coding chr22:44547390 chr22:44547379 nonsynonymous SNV 0.998 2 10 hm5C_associated_SNPs_14776 0 0 0 0 2 PARVB chr22:44547363 3'AG 44547363 Downstream 17bp
chr22 44547379 44547379 1 + T C rs113622568 44547390 + 44547370 44547410 41 TCACTTTTGTGAACAAGCACCTGAACAAGCTGAATTTGGAG TCACTTTTGCGAACAAGCACCTGAACAAGCTGAATTTGGAG < 41bp 1 0.246428950110806 1 0.400147914886475 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PARVB ENSG00000188677 CDS Human protein_coding chr22:44547390 chr22:44547379 nonsynonymous SNV 0.998 2 10 hm5C_associated_SNPs_14776 0 0 0 0 2 PARVB chr22:44547431 5'GT 44547431 Upstream 53bp
chr22 45579367 45579367 1 + G A rs146749329 45579387 + 45579367 45579407 41 GACACAGCTTTTGGTGCGGGCAGACACCAATTTAGGTGGGT AACACAGCTTTTGGTGCGGGCAGACACCAATTTAGGTGGGT < 41bp 1 0.113458199489335 1 0.412487030029297 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NUP50 ENSG00000093000 CDS Human protein_coding chr22:45579387 chr22:45579367 synonymous SNV . 0 1 hm5C_associated_SNPs_14782 0 0 0 0 2 NUP50 chr22:45579283 3'AG 45579283 Downstream 85bp
chr22 45579367 45579367 1 + G A rs146749329 45579387 + 45579367 45579407 41 GACACAGCTTTTGGTGCGGGCAGACACCAATTTAGGTGGGT AACACAGCTTTTGGTGCGGGCAGACACCAATTTAGGTGGGT < 41bp 1 0.113458199489335 1 0.412487030029297 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NUP50 ENSG00000093000 CDS Human protein_coding chr22:45579387 chr22:45579367 synonymous SNV . 0 1 hm5C_associated_SNPs_14782 0 0 0 0 2 NUP50 chr22:45579401 5'GT 45579401 Upstream 35bp
chr22 45579396 45579396 1 + A G rs373726931 45579387 + 45579367 45579407 41 GACACAGCTTTTGGTGCGGGCAGACACCAATTTAGGTGGGT GACACAGCTTTTGGTGCGGGCAGACACCAGTTTAGGTGGGT < 41bp 1 0.111320855245117 1 0.405493766069412 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NUP50 ENSG00000093000 CDS Human protein_coding chr22:45579387 chr22:45579396 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_14783 0 0 1 0 1 NUP50 chr22:45579401 5'GT 45579401 Upstream 6bp
chr22 45818230 45818230 1 + T A rs145976708 45818239 + 45818219 45818259 41 CCTCCAGAAGCTGGAAAGCACCACCAGAAAGGCAGTTTGTG CCTCCAGAAGCAGGAAAGCACCACCAGAAAGGCAGTTTGTG < 41bp 1 0.103202041790074 1 0.0489808917045593 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIBC2 ENSG00000128408 CDS Human protein_coding chr22:45818239 chr22:45818230 nonsynonymous SNV 0.274 0 12 hm5C_associated_SNPs_14784 0 0 1 0 2 RIBC2 chr22:45818170 3'AG 45818170 Downstream 61bp
chr22 45818230 45818230 1 + T A rs145976708 45818239 + 45818219 45818259 41 CCTCCAGAAGCTGGAAAGCACCACCAGAAAGGCAGTTTGTG CCTCCAGAAGCAGGAAAGCACCACCAGAAAGGCAGTTTGTG < 41bp 1 0.103202041790074 1 0.0489808917045593 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIBC2 ENSG00000128408 CDS Human protein_coding chr22:45818239 chr22:45818230 nonsynonymous SNV 0.274 0 12 hm5C_associated_SNPs_14784 0 0 1 0 2 RIBC2 chr22:45818288 5'GT 45818288 Upstream 59bp
chr22 46499120 46499120 1 + G A rs9616125 46499106 + 46499086 46499126 41 TCTGGATCGGCGGTCCCCATCAGAGGCCTGGGCTGAGTCCT TCTGGATCGGCGGTCCCCATCAGAGGCCTGGGCTAAGTCCT < 41bp 1 0.639499940315322 1 0.843213260173798 experiment 0.721000119369356 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MIRLET7BHG ENSG00000197182 CDS Human lincRNA chr22:46499106 chr22:46499120 synonymous SNV . 0 35 hm5C_associated_SNPs_14788 0 0 0 0 2 MIRLET7BHG chr22:46499072 3'AG 46499072 Downstream 49bp
chr22 46499120 46499120 1 + G A rs9616125 46499106 + 46499086 46499126 41 TCTGGATCGGCGGTCCCCATCAGAGGCCTGGGCTGAGTCCT TCTGGATCGGCGGTCCCCATCAGAGGCCTGGGCTAAGTCCT < 41bp 1 0.639499940315322 1 0.843213260173798 experiment 0.721000119369356 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MIRLET7BHG ENSG00000197182 CDS Human lincRNA chr22:46499106 chr22:46499120 synonymous SNV . 0 35 hm5C_associated_SNPs_14788 0 0 0 0 2 MIRLET7BHG chr22:46499129 5'GT 46499129 Upstream 10bp
chr22 46681141 46681141 1 + G A rs35883013 46681140 + 46681120 46681160 41 AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCGCTGAC AGAACTTTATTCTTCCAGGGCAAATATGAGGCCGCGCTGAC < 41bp 1 0.0899590740397858 1 0.15700426697731 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC38 ENSG00000075234 CDS Human protein_coding chr22:46681140 chr22:46681141 nonsynonymous SNV 0.044 1 22 hm5C_associated_SNPs_14789 0 0 1 0 2 TTC38 chr22:46681138 3'AG 46681138 Downstream 4bp
chr22 46681141 46681141 1 + G A rs35883013 46681140 + 46681120 46681160 41 AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCGCTGAC AGAACTTTATTCTTCCAGGGCAAATATGAGGCCGCGCTGAC < 41bp 1 0.0899590740397858 1 0.15700426697731 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC38 ENSG00000075234 CDS Human protein_coding chr22:46681140 chr22:46681141 nonsynonymous SNV 0.044 1 22 hm5C_associated_SNPs_14789 0 0 1 0 2 TTC38 chr22:46681176 5'GT 46681176 Upstream 36bp
chr22 46733831 46733831 1 + G A rs55952751 46733839 + 46733819 46733859 41 GAGTATTGGAATGATGTGTTCAGGTGAGTGCGGGTCACAGC GAGTATTGGAATAATGTGTTCAGGTGAGTGCGGGTCACAGC < 41bp 1 0.678637496492344 1 0.75324273109436 experiment 0.642725007015312 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRMU ENSG00000100416 CDS Human protein_coding chr22:46733839 chr22:46733831 nonsynonymous SNV 0.846 0 13 hm5C_associated_SNPs_14793 1 0 1 0 1 TRMU chr22:46733841 5'GT 46733841 Upstream 11bp
chr22 50861956 50861956 1 + C T rs373613910 50861963 + 50861943 50861983 41 CCCGTCTGCATGGCGCCCGCCTCATGGCAGCACTGCTGCAC CCCGTCTGCATGGTGCCCGCCTCATGGCAGCACTGCTGCAC < 41bp 1 0.460314488983343 1 0.270027339458466 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50861963 chr22:50861956 synonymous SNV . 0 14 hm5C_associated_SNPs_14807 0 0 1 0 2 PPP6R2 chr22:50861891 3'AG 50861891 Downstream 66bp
chr22 50861956 50861956 1 + C T rs373613910 50861963 + 50861943 50861983 41 CCCGTCTGCATGGCGCCCGCCTCATGGCAGCACTGCTGCAC CCCGTCTGCATGGTGCCCGCCTCATGGCAGCACTGCTGCAC < 41bp 1 0.460314488983343 1 0.270027339458466 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50861963 chr22:50861956 synonymous SNV . 0 14 hm5C_associated_SNPs_14807 0 0 1 0 2 PPP6R2 chr22:50862043 5'GT 50862043 Upstream 88bp
chr22 50877166 50877166 1 + G A rs4824131 50877165 + 50877145 50877185 41 GGCCCCCGGGAAGAAGGAAGCGCCCCCTGTGGAGGGTGACT GGCCCCCGGGAAGAAGGAAGCACCCCCTGTGGAGGGTGACT < 41bp 1 0.263534839008836 1 0.184262275695801 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50877165 chr22:50877166 synonymous SNV . 0 22 hm5C_associated_SNPs_14808 0 0 1 0 1 PPP6R2 chr22:50877191 5'GT 50877191 Upstream 26bp
chr22 50882469 50882469 1 + G A rs200092795 50882453 + 50882433 50882473 41 ACCCACCCCAGCAGTCTCTTCTGCACTGGCCGTGGCGGTCC ACCCACCCCAGCAGTCTCTTCTGCACTGGCCGTGGCAGTCC < 41bp 1 0.772436854783224 1 0.903335690498352 experiment 0.455126290433552 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50882453 chr22:50882469 synonymous SNV . 0 37 hm5C_associated_SNPs_14809 0 0 1 0 1 PPP6R2 chr22:50882546 5'GT 50882546 Upstream 78bp
chr22 50882469 50882469 1 + G A rs200092795 50882468 + 50882448 50882488 41 CTCTTCTGCACTGGCCGTGGCGGTCCCCCTAGGGCCCATCA CTCTTCTGCACTGGCCGTGGCAGTCCCCCTAGGGCCCATCA < 41bp 1 0.179694179682947 1 0.173076868057251 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50882468 chr22:50882469 synonymous SNV . 0 22 hm5C_associated_SNPs_14810 0 0 1 0 1 PPP6R2 chr22:50882546 5'GT 50882546 Upstream 78bp
chr22 50882483 50882483 1 + C A rs573472469 50882468 + 50882448 50882488 41 CTCTTCTGCACTGGCCGTGGCGGTCCCCCTAGGGCCCATCA CTCTTCTGCACTGGCCGTGGCGGTCCCCCTAGGGCACATCA < 41bp 1 0.187588156156831 1 0.215956449508667 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50882468 chr22:50882483 nonsynonymous SNV 0.003 3 36 hm5C_associated_SNPs_14811 0 0 1 0 1 PPP6R2 chr22:50882546 5'GT 50882546 Upstream 64bp
chr22 50959456 50959456 1 + C G rs147011565 50959441 + 50959421 50959461 41 CTGCGGGAGCGGGAGGGGGCCCCAGAGCCTGCATCCTGCGT CTGCGGGAGCGGGAGGGGGCCCCAGAGCCTGCATCGTGCGT < 41bp 1 0.337354474587401 1 0.422895014286041 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50959441 chr22:50959456 synonymous SNV . 0 36 hm5C_associated_SNPs_14814 0 0 1 0 1 NCAPH2 chr22:50959465 5'GT 50959465 Upstream 10bp
chr22 50959459 50959459 1 + C T rs559989268 50959441 + 50959421 50959461 41 CTGCGGGAGCGGGAGGGGGCCCCAGAGCCTGCATCCTGCGT CTGCGGGAGCGGGAGGGGGCCCCAGAGCCTGCATCCTGTGT < 41bp 1 0.336249942409005 1 0.457937389612198 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50959441 chr22:50959459 synonymous SNV . 0 39 hm5C_associated_SNPs_14815 0 0 1 0 1 NCAPH2 chr22:50959465 5'GT 50959465 Upstream 7bp
chr22 50960197 50960197 1 + T C rs150206007 50960214 + 50960194 50960234 41 GTGTGGAGGAGGCTCTGGGACAGAAGCGCAAGAGGAAGGGC GTGCGGAGGAGGCTCTGGGACAGAAGCGCAAGAGGAAGGGC < 41bp 1 0.779109723248195 1 0.27430123090744 experiment 0.441780553503609 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50960214 chr22:50960197 nonsynonymous SNV 0.991 1 4 hm5C_associated_SNPs_14816 0 0 1 0 2 NCAPH2 chr22:50960170 3'AG 50960170 Downstream 28bp
chr22 50960197 50960197 1 + T C rs150206007 50960214 + 50960194 50960234 41 GTGTGGAGGAGGCTCTGGGACAGAAGCGCAAGAGGAAGGGC GTGCGGAGGAGGCTCTGGGACAGAAGCGCAAGAGGAAGGGC < 41bp 1 0.779109723248195 1 0.27430123090744 experiment 0.441780553503609 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50960214 chr22:50960197 nonsynonymous SNV 0.991 1 4 hm5C_associated_SNPs_14816 0 0 1 0 2 NCAPH2 chr22:50960277 5'GT 50960277 Upstream 81bp
chr22 51143520 51143520 1 + C T rs188450024 51143513 + 51143493 51143533 41 GAAGCCAGAAGAGGACGGGGCTCGGCGCAGAGGTGAGGGGT GAAGCCAGAAGAGGACGGGGCTCGGCGTAGAGGTGAGGGGT < 41bp 1 0.290895193599566 1 0.636919260025024 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51143513 chr22:51143520 synonymous SNV . 0 28 hm5C_associated_SNPs_14817 0 0 1 0 1 SHANK3 chr22:51143524 5'GT 51143524 Upstream 5bp
chrX 2632482 2632482 1 + C A rs1136447 2632489 + 2632469 2632509 41 GTTTCGATTTATCCGATGCCCTTCCTGGTGAGTATCAACAT GTTTCGATTTATCAGATGCCCTTCCTGGTGAGTATCAACAT < 41bp 1 0.0848260868672078 1 0.0686672329902649 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD99 ENSG00000002586 CDS Human protein_coding chrX:2632489 chrX:2632482 synonymous SNV . 0 14 hm5C_associated_SNPs_14864 0 0 1 0 2 CD99 chrX:2632463 3'AG 2632463 Downstream 20bp
chrX 2632482 2632482 1 + C A rs1136447 2632489 + 2632469 2632509 41 GTTTCGATTTATCCGATGCCCTTCCTGGTGAGTATCAACAT GTTTCGATTTATCAGATGCCCTTCCTGGTGAGTATCAACAT < 41bp 1 0.0848260868672078 1 0.0686672329902649 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD99 ENSG00000002586 CDS Human protein_coding chrX:2632489 chrX:2632482 synonymous SNV . 0 14 hm5C_associated_SNPs_14864 0 0 1 0 2 CD99 chrX:2632495 5'GT 2632495 Upstream 14bp
chrX 9469880 9469880 1 + A G rs373782775 9469881 + 9469861 9469901 41 CTCGCAGAGCACCAGGCCCACCGTGAAAGGTACAGCAAATT CTCGCAGAGCACCAGGCCCGCCGTGAAAGGTACAGCAAATT < 41bp 1 0.145300555533996 1 0.177938431501389 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBL1X ENSG00000101849 UTR5 Human protein_coding chrX:9469881 chrX:9469880 . . 0 20 hm5C_associated_SNPs_14865 0 0 1 0 2 TBL1X chrX:9469820 3'AG 9469820 Downstream 61bp
chrX 9469880 9469880 1 + A G rs373782775 9469881 + 9469861 9469901 41 CTCGCAGAGCACCAGGCCCACCGTGAAAGGTACAGCAAATT CTCGCAGAGCACCAGGCCCGCCGTGAAAGGTACAGCAAATT < 41bp 1 0.145300555533996 1 0.177938431501389 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBL1X ENSG00000101849 UTR5 Human protein_coding chrX:9469881 chrX:9469880 . . 0 20 hm5C_associated_SNPs_14865 0 0 1 0 2 TBL1X chrX:9469889 5'GT 9469889 Upstream 10bp
chrX 11781102 11781102 1 + C A rs143225215 11781084 + 11781064 11781104 41 CACGTTATGCCACATGCCAACATGAACGTGCATTATATCCC CACGTTATGCCACATGCCAACATGAACGTGCATTATATACC < 41bp 1 0.488626142670981 1 0.0673393905162811 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MSL3 ENSG00000005302 CDS Human protein_coding chrX:11781084 chrX:11781102 synonymous SNV . 0 39 hm5C_associated_SNPs_14867 0 0 1 0 1 MSL3 chrX:11781116 5'GT 11781116 Upstream 15bp
chrX 13679215 13679215 1 + G A rs5935648 13679220 + 13679200 13679240 41 TGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAG TGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAG < 41bp 1 0.443399179848883 1 0.0811442136764526 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCEANC ENSG00000176896 UTR5 Human protein_coding chrX:13679220 chrX:13679215 . . 0 16 hm5C_associated_SNPs_14873 0 0 0 0 1 TCEANC chrX:13679150 3'AG 13679150 Downstream 66bp
chrX 13679215 13679215 1 + G A rs5935648 13679221 + 13679201 13679241 41 GATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGG GATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGG < 41bp 1 0.455825227279793 1 0.355705380439758 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCEANC ENSG00000176896 UTR5 Human protein_coding chrX:13679221 chrX:13679215 . . 0 15 hm5C_associated_SNPs_14874 0 0 0 0 1 TCEANC chrX:13679150 3'AG 13679150 Downstream 66bp
chrX 13679215 13679215 1 + G A rs5935648 13679222 + 13679202 13679242 41 ATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGG ATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGG < 41bp 1 0.54219728459412 1 0.357540965080261 experiment 0.91560543081176 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCEANC ENSG00000176896 UTR5 Human protein_coding chrX:13679222 chrX:13679215 . . 0 14 hm5C_associated_SNPs_14875 0 0 0 0 1 TCEANC chrX:13679150 3'AG 13679150 Downstream 66bp
chrX 13679215 13679215 1 + G A rs5935648 13679229 + 13679209 13679249 41 TGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGGTGAGTCA TGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGGTGAGTCA < 41bp 1 0.743700316654074 1 0.424458652734756 experiment 0.512599366691853 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCEANC ENSG00000176896 UTR5 Human protein_coding chrX:13679229 chrX:13679215 . . 0 7 hm5C_associated_SNPs_14876 0 0 0 0 1 TCEANC chrX:13679150 3'AG 13679150 Downstream 66bp
chrX 14929375 14929375 1 + G A rs35164803 14929381 + 14929361 14929401 41 TCCTTTCAAGTATAGCTATCCACCACTAGTAGATGATGACT TCCTTTCAAGTATAACTATCCACCACTAGTAGATGATGACT < 41bp 1 0.646381201838031 1 0.244753777980804 experiment 0.707237596323939 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD2 ENSG00000130150 CDS Human protein_coding chrX:14929381 chrX:14929375 nonsynonymous SNV 0.998 3 15 hm5C_associated_SNPs_14877 0 0 0 0 1 MOSPD2 chrX:14929359 3'AG 14929359 Downstream 17bp
chrX 16753432 16753432 1 + C T rs140055188 16753431 + 16753411 16753451 41 AGCACAAACAATAAAGAAATCCGTAGAAGAAGGAAAAATAG AGCACAAACAATAAAGAAATCTGTAGAAGAAGGAAAAATAG < 41bp 1 0.65657455853446 1 0.331674158573151 experiment 0.686850882931081 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SYAP1 ENSG00000169895 CDS Human protein_coding chrX:16753431 chrX:16753432 synonymous SNV . 0 22 hm5C_associated_SNPs_14878 0 0 1 0 3 SYAP1 chrX:16753350 3'AG 16753350 Downstream 83bp
chrX 16753432 16753432 1 + C T rs140055188 16753431 + 16753411 16753451 41 AGCACAAACAATAAAGAAATCCGTAGAAGAAGGAAAAATAG AGCACAAACAATAAAGAAATCTGTAGAAGAAGGAAAAATAG < 41bp 1 0.65657455853446 1 0.331674158573151 experiment 0.686850882931081 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SYAP1 ENSG00000169895 CDS Human protein_coding chrX:16753431 chrX:16753432 synonymous SNV . 0 22 hm5C_associated_SNPs_14878 0 0 1 0 3 SYAP1 chrX:16753388 3'AG 16753388 Downstream 45bp
chrX 16753432 16753432 1 + C T rs140055188 16753431 + 16753411 16753451 41 AGCACAAACAATAAAGAAATCCGTAGAAGAAGGAAAAATAG AGCACAAACAATAAAGAAATCTGTAGAAGAAGGAAAAATAG < 41bp 1 0.65657455853446 1 0.331674158573151 experiment 0.686850882931081 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SYAP1 ENSG00000169895 CDS Human protein_coding chrX:16753431 chrX:16753432 synonymous SNV . 0 22 hm5C_associated_SNPs_14878 0 0 1 0 3 SYAP1 chrX:16753468 5'GT 16753468 Upstream 37bp
chrX 16965163 16965163 1 + C A rs747915100 16965153 + 16965133 16965173 41 GCGGGGGCCCCGGGTCTGGGCCCCCCGAGGCCGCCAGAGTC GCGGGGGCCCCGGGTCTGGGCCCCCCGAGGACGCCAGAGTC < 41bp 1 0.519093182716848 1 0.126885324716568 experiment 0.961813634566303 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control REPS2 ENSG00000169891 CDS Human protein_coding chrX:16965153 chrX:16965163 nonsynonymous SNV 0.021 1 31 hm5C_associated_SNPs_14882 0 0 0 0 1 REPS2 chrX:16965257 5'GT 16965257 Upstream 95bp
chrX 16965163 16965163 1 + C A rs747915100 16965154 + 16965134 16965174 41 CGGGGGCCCCGGGTCTGGGCCCCCCGAGGCCGCCAGAGTCG CGGGGGCCCCGGGTCTGGGCCCCCCGAGGACGCCAGAGTCG < 41bp 1 0.366967053070159 1 0.199631184339523 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control REPS2 ENSG00000169891 CDS Human protein_coding chrX:16965154 chrX:16965163 nonsynonymous SNV 0.021 1 30 hm5C_associated_SNPs_14883 0 0 0 0 1 REPS2 chrX:16965257 5'GT 16965257 Upstream 95bp
chrX 16965163 16965163 1 + C A rs747915100 16965155 + 16965135 16965175 41 GGGGGCCCCGGGTCTGGGCCCCCCGAGGCCGCCAGAGTCGC GGGGGCCCCGGGTCTGGGCCCCCCGAGGACGCCAGAGTCGC < 41bp 1 0.58119960612565 1 0.471027225255966 experiment 0.837600787748699 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control REPS2 ENSG00000169891 CDS Human protein_coding chrX:16965155 chrX:16965163 nonsynonymous SNV 0.021 1 29 hm5C_associated_SNPs_14884 0 0 0 0 1 REPS2 chrX:16965257 5'GT 16965257 Upstream 95bp
chrX 16965163 16965163 1 + C A rs747915100 16965156 + 16965136 16965176 41 GGGGCCCCGGGTCTGGGCCCCCCGAGGCCGCCAGAGTCGCC GGGGCCCCGGGTCTGGGCCCCCCGAGGACGCCAGAGTCGCC < 41bp 1 0.792346297740741 1 0.642603397369385 experiment 0.415307404518518 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control REPS2 ENSG00000169891 CDS Human protein_coding chrX:16965156 chrX:16965163 nonsynonymous SNV 0.021 1 28 hm5C_associated_SNPs_14885 0 0 0 0 1 REPS2 chrX:16965257 5'GT 16965257 Upstream 95bp
chrX 16965199 16965199 1 + C T rs374993556 16965184 + 16965164 16965204 41 CGCCAGAGTCGCCCCCGGCACGGCCACTGCGGCCGCCGGCC CGCCAGAGTCGCCCCCGGCACGGCCACTGCGGCCGTCGGCC < 41bp 1 0.661982465635777 1 0.429750889539719 experiment 0.676035068728445 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control REPS2 ENSG00000169891 CDS Human protein_coding chrX:16965184 chrX:16965199 nonsynonymous SNV 0.021 0 36 hm5C_associated_SNPs_14886 0 0 0 0 1 REPS2 chrX:16965257 5'GT 16965257 Upstream 59bp
chrX 17705962 17705962 1 + C T rs138104885 17705955 + 17705935 17705975 41 CTTCCTCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGC CTTCCTCCCAGCCACAAGGCCACCCTGTGTGGAGGAGCTGC < 41bp 1 0.320109222545132 1 0.0274228453636169 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NHS ENSG00000188158 CDS Human protein_coding chrX:17705955 chrX:17705962 synonymous SNV . 0 28 hm5C_associated_SNPs_14887 1 0 0 0 1 NHS chrX:17706014 5'GT 17706014 Upstream 53bp
chrX 17705962 17705962 1 + C T rs138104885 17705959 + 17705939 17705979 41 CTCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGCACCG CTCCCAGCCACAAGGCCACCCTGTGTGGAGGAGCTGCACCG < 41bp 1 0.620716280337514 1 0.358493685722351 experiment 0.758567439324972 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NHS ENSG00000188158 CDS Human protein_coding chrX:17705959 chrX:17705962 synonymous SNV . 0 24 hm5C_associated_SNPs_14888 1 0 0 0 1 NHS chrX:17706014 5'GT 17706014 Upstream 53bp
chrX 19373839 19373839 1 + A C rs1126565 19373838 + 19373818 19373858 41 TATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT TATCCTGTGCGTCCGAGAGGCCACAAGGTTTGCTGCTGCCT < 41bp 1 0.351544157757273 1 0.117314755916595 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19373838 chrX:19373839 synonymous SNV . 0 22 hm5C_associated_SNPs_14889 0 0 1 0 2 PDHA1 chrX:19373804 3'AG 19373804 Downstream 36bp
chrX 19373839 19373839 1 + A C rs1126565 19373838 + 19373818 19373858 41 TATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT TATCCTGTGCGTCCGAGAGGCCACAAGGTTTGCTGCTGCCT < 41bp 1 0.351544157757273 1 0.117314755916595 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19373838 chrX:19373839 synonymous SNV . 0 22 hm5C_associated_SNPs_14889 0 0 1 0 2 PDHA1 chrX:19373875 5'GT 19373875 Upstream 37bp
chrX 19373842 19373842 1 + A G rs35752213 19373838 + 19373818 19373858 41 TATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT TATCCTGTGCGTCCGAGAGGCAACGAGGTTTGCTGCTGCCT < 41bp 1 0.477234496870227 1 0.394874572753906 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19373838 chrX:19373842 synonymous SNV . 0 25 hm5C_associated_SNPs_14890 1 0 1 0 2 PDHA1 chrX:19373804 3'AG 19373804 Downstream 39bp
chrX 19373842 19373842 1 + A G rs35752213 19373838 + 19373818 19373858 41 TATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT TATCCTGTGCGTCCGAGAGGCAACGAGGTTTGCTGCTGCCT < 41bp 1 0.477234496870227 1 0.394874572753906 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19373838 chrX:19373842 synonymous SNV . 0 25 hm5C_associated_SNPs_14890 1 0 1 0 2 PDHA1 chrX:19373875 5'GT 19373875 Upstream 34bp
chrX 21869647 21869647 1 + C T rs371946947 21869650 + 21869630 21869670 41 CCTGGTATAAATTTACCCGTCAATCAACTGACCTATTTCTT CCTGGTATAAATTTACCTGTCAATCAACTGACCTATTTCTT < 41bp 1 0.117363692340359 1 0.15087965130806 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MBTPS2 ENSG00000012174 CDS Human protein_coding chrX:21869650 chrX:21869647 synonymous SNV . 0 18 hm5C_associated_SNPs_14891 0 0 1 0 2 MBTPS2 chrX:21869627 3'AG 21869627 Downstream 21bp
chrX 21869647 21869647 1 + C T rs371946947 21869650 + 21869630 21869670 41 CCTGGTATAAATTTACCCGTCAATCAACTGACCTATTTCTT CCTGGTATAAATTTACCTGTCAATCAACTGACCTATTTCTT < 41bp 1 0.117363692340359 1 0.15087965130806 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MBTPS2 ENSG00000012174 CDS Human protein_coding chrX:21869650 chrX:21869647 synonymous SNV . 0 18 hm5C_associated_SNPs_14891 0 0 1 0 2 MBTPS2 chrX:21869730 5'GT 21869730 Upstream 84bp
chrX 40450506 40450506 1 + C T rs150392503 40450488 + 40450468 40450508 41 GTGCTTTTCAATGTTTAGGACCTTTCTTGGCCAGGACTCGC GTGCTTTTCAATGTTTAGGACCTTTCTTGGCCAGGACTTGC < 41bp 1 0.0226647227190549 1 0.0104721784591675 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40450488 chrX:40450506 synonymous SNV . 0 39 hm5C_associated_SNPs_14909 1 0 1 0 1 ATP6AP2 chrX:40450486 3'AG 40450486 Downstream 21bp
chrX 47065741 47065741 1 + C G rs201672447 47065738 + 47065718 47065758 41 GGCAATGTGCAGGTGGTGATCCCCTTCCTGACAGAGTCGTA GGCAATGTGCAGGTGGTGATCCCGTTCCTGACAGAGTCGTA < 41bp 1 0.465580134148599 1 0.153965085744858 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control UBA1 ENSG00000130985 CDS Human protein_coding chrX:47065738 chrX:47065741 synonymous SNV . 0 24 hm5C_associated_SNPs_14912 0 0 1 0 1 UBA1 chrX:47065647 3'AG 47065647 Downstream 95bp
chrX 48435928 48435928 1 + C G rs235829 48435925 + 48435905 48435945 41 TATAAAGGTTTTTGGAGCTGCACCGAAGCATCTTATTTTAT TATAAAGGTTTTTGGAGCTGCACGGAAGCATCTTATTTTAT < 41bp 1 0.398089227025841 1 0.0809211134910583 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM3 ENSG00000102317 CDS Human protein_coding chrX:48435925 chrX:48435928 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_14920 0 0 1 7 1 RBM3 chrX:48435853 3'AG 48435853 Downstream 76bp
chrX 49031026 49031026 1 + G A rs146996859 49031034 + 49031014 49031054 41 CCTGCAGACCCCGCAGATGGCCCGGTGTAGGCGAACTTCCC CCTGCAGACCCCACAGATGGCCCGGTGTAGGCGAACTTCCC < 41bp 1 0.486156765796024 1 0.0902201235294342 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLP2 ENSG00000102007 CDS Human protein_coding chrX:49031034 chrX:49031026 nonsynonymous SNV 0.367 0 13 hm5C_associated_SNPs_14927 0 0 1 0 1 PLP2 chrX:49031021 3'AG 49031021 Downstream 6bp
chrX 49093646 49093646 1 + G T rs782474626 49093654 + 49093634 49093674 41 GATCAACCCTGCGGTGGGCTCTGGCCTCAGCCCTCTGCTGC GATCAACCCTGCTGTGGGCTCTGGCCTCAGCCCTCTGCTGC < 41bp 1 0.769785425462086 1 0.405545294284821 experiment 0.460429149075827 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49093654 chrX:49093646 synonymous SNV . 0 13 hm5C_associated_SNPs_14928 0 0 1 0 2 CCDC22 chrX:49093553 3'AG 49093553 Downstream 94bp
chrX 49093646 49093646 1 + G T rs782474626 49093654 + 49093634 49093674 41 GATCAACCCTGCGGTGGGCTCTGGCCTCAGCCCTCTGCTGC GATCAACCCTGCTGTGGGCTCTGGCCTCAGCCCTCTGCTGC < 41bp 1 0.769785425462086 1 0.405545294284821 experiment 0.460429149075827 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49093654 chrX:49093646 synonymous SNV . 0 13 hm5C_associated_SNPs_14928 0 0 1 0 2 CCDC22 chrX:49093730 5'GT 49093730 Upstream 85bp
chrX 49103973 49103973 1 + C A rs183877705 49103974 + 49103954 49103994 41 TAGGAGCCCCAGGCCCAGGCCACTCAGGTGTCAGATGTGCC TAGGAGCCCCAGGCCCAGGACACTCAGGTGTCAGATGTGCC < 41bp 1 0.0855079114982349 1 0.0480757057666779 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49103974 chrX:49103973 nonsynonymous SNV 0.930 1 20 hm5C_associated_SNPs_14929 1 0 0 0 2 CCDC22 chrX:49103957 3'AG 49103957 Downstream 17bp
chrX 49103973 49103973 1 + C A rs183877705 49103974 + 49103954 49103994 41 TAGGAGCCCCAGGCCCAGGCCACTCAGGTGTCAGATGTGCC TAGGAGCCCCAGGCCCAGGACACTCAGGTGTCAGATGTGCC < 41bp 1 0.0855079114982349 1 0.0480757057666779 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49103974 chrX:49103973 nonsynonymous SNV 0.930 1 20 hm5C_associated_SNPs_14929 1 0 0 0 2 CCDC22 chrX:49104019 5'GT 49104019 Upstream 47bp
chrX 49368288 49368288 1 + G C rs1967646 49368274 + 49368254 49368294 41 TATTTTTTATTTTTAAGGGCCGAAGCCTGAAGCTGATAGCC TATTTTTTATTTTTAAGGGCCGAAGCCTGAAGCTCATAGCC < 41bp 1 0.18062103035614 1 0.421843379735947 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GAGE1 ENSG00000205777 CDS Human protein_coding chrX:49368274 chrX:49368288 nonsynonymous SNV 0.008 2 35 hm5C_associated_SNPs_14932 0 0 0 4 1 GAGE1 chrX:49368271 3'AG 49368271 Downstream 18bp
chrX 49689845 49689845 1 + A G rs185140502 49689825 + 49689805 49689845 41 AAAACAGGGCCACATAGCTGCCTTTCTATCAAGTCTCCCTA AAAACAGGGCCACATAGCTGCCTTTCTATCAAGTCTCCCTG < 41bp 1 0.0931191603217765 1 0.00652015209197998 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLCN5 ENSG00000171365 UTR5 Human protein_coding chrX:49689825 chrX:49689845 . . 0 41 hm5C_associated_SNPs_14933 0 0 1 0 1 CLCN5 chrX:49689781 3'AG 49689781 Downstream 65bp
chrX 54836361 54836361 1 + A G rs1043031 54836360 + 54836340 54836380 41 GGCACCTGCCACCCAGGCCTCATCTACTACTCAGCTGACTG GGCACCTGCCACCCAGGCCTCGTCTACTACTCAGCTGACTG < 41bp 1 0.187727313635007 1 0.0830460786819458 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54836360 chrX:54836361 synonymous SNV . 0 22 hm5C_associated_SNPs_14935 0 0 1 0 1 MAGED2 chrX:54836356 3'AG 54836356 Downstream 6bp
chrX 57405163 57405163 1 + T C rs4826543 57405181 + 57405161 57405201 41 CGTTATGCTGAAGACCTGGCCCCCATGTTGAAGGTCATGGC CGCTATGCTGAAGACCTGGCCCCCATGTTGAAGGTCATGGC < 41bp 1 0.484803651950889 1 0.178863972425461 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57405181 chrX:57405163 synonymous SNV . 0 3 hm5C_associated_SNPs_14937 0 0 0 0 2 FAAH2 chrX:57405084 3'AG 57405084 Downstream 80bp
chrX 57405163 57405163 1 + T C rs4826543 57405181 + 57405161 57405201 41 CGTTATGCTGAAGACCTGGCCCCCATGTTGAAGGTCATGGC CGCTATGCTGAAGACCTGGCCCCCATGTTGAAGGTCATGGC < 41bp 1 0.484803651950889 1 0.178863972425461 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57405181 chrX:57405163 synonymous SNV . 0 3 hm5C_associated_SNPs_14937 0 0 0 0 2 FAAH2 chrX:57405219 5'GT 57405219 Upstream 57bp
chrX 64887622 64887622 1 + C T rs28384384 64887642 + 64887622 64887662 41 CCGAATCCAAGCCGTGTGTACTGCGTGCTCAGCACTGCCCG TCGAATCCAAGCCGTGTGTACTGCGTGCTCAGCACTGCCCG < 41bp 1 0.736364521687043 1 0.291745841503143 experiment 0.527270956625914 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MSN ENSG00000147065 UTR5 Human protein_coding chrX:64887642 chrX:64887622 . . 0 1 hm5C_associated_SNPs_14941 0 0 1 0 1 MSN chrX:64887720 5'GT 64887720 Upstream 99bp
chrX 64887696 64887696 1 + C T rs373874891 64887704 + 64887684 64887724 41 CAACTCCGCTGCCTTTGCCGCCACCATGCCCAAAACGGTGA CAACTCCGCTGCTTTTGCCGCCACCATGCCCAAAACGGTGA < 41bp 1 0.293203387177904 1 0.198740512132645 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MSN ENSG00000147065 UTR5 Human protein_coding chrX:64887704 chrX:64887696 . . 0 13 hm5C_associated_SNPs_14942 0 0 1 0 1 MSN chrX:64887720 5'GT 64887720 Upstream 25bp
chrX 64887696 64887696 1 + C T rs373874891 64887705 + 64887685 64887725 41 AACTCCGCTGCCTTTGCCGCCACCATGCCCAAAACGGTGAG AACTCCGCTGCTTTTGCCGCCACCATGCCCAAAACGGTGAG < 41bp 1 0.586004545262497 1 0.423947811126709 experiment 0.827990909475007 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MSN ENSG00000147065 UTR5 Human protein_coding chrX:64887705 chrX:64887696 . . 0 12 hm5C_associated_SNPs_14943 0 0 1 0 1 MSN chrX:64887720 5'GT 64887720 Upstream 25bp
chrX 68059868 68059868 1 + G A rs150883256 68059888 + 68059868 68059908 41 GTCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT ATCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT < 41bp 1 0.163290426775866 1 0.0865897238254547 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059888 chrX:68059868 nonsynonymous SNV 0.987 1 1 hm5C_associated_SNPs_14954 0 0 0 0 2 EFNB1 chrX:68059803 3'AG 68059803 Downstream 66bp
chrX 68059868 68059868 1 + G A rs150883256 68059888 + 68059868 68059908 41 GTCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT ATCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT < 41bp 1 0.163290426775866 1 0.0865897238254547 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059888 chrX:68059868 nonsynonymous SNV 0.987 1 1 hm5C_associated_SNPs_14954 0 0 0 0 2 EFNB1 chrX:68059931 5'GT 68059931 Upstream 64bp
chrX 68059869 68059869 1 + T C rs16989105 68059888 + 68059868 68059908 41 GTCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT GCCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT < 41bp 1 0.184316162693402 1 0.0956226885318756 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059888 chrX:68059869 nonsynonymous SNV 0.985 1 2 hm5C_associated_SNPs_14955 1 0 0 0 2 EFNB1 chrX:68059803 3'AG 68059803 Downstream 67bp
chrX 68059869 68059869 1 + T C rs16989105 68059888 + 68059868 68059908 41 GTCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT GCCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT < 41bp 1 0.184316162693402 1 0.0956226885318756 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059888 chrX:68059869 nonsynonymous SNV 0.985 1 2 hm5C_associated_SNPs_14955 1 0 0 0 2 EFNB1 chrX:68059931 5'GT 68059931 Upstream 63bp
chrX 69622462 69622462 1 + A G rs760173748 69622447 + 69622427 69622467 41 TTGCTGACCTACAGCAGAAGCTGCTGGATGCAGAAAGTGAA TTGCTGACCTACAGCAGAAGCTGCTGGATGCAGAAGGTGAA < 41bp 1 0.367782549971193 1 0.0833665132522583 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69622447 chrX:69622462 nonsynonymous SNV 0.999 1 36 hm5C_associated_SNPs_14959 0 0 1 0 2 KIF4A chrX:69622416 3'AG 69622416 Downstream 47bp
chrX 69622462 69622462 1 + A G rs760173748 69622447 + 69622427 69622467 41 TTGCTGACCTACAGCAGAAGCTGCTGGATGCAGAAAGTGAA TTGCTGACCTACAGCAGAAGCTGCTGGATGCAGAAGGTGAA < 41bp 1 0.367782549971193 1 0.0833665132522583 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69622447 chrX:69622462 nonsynonymous SNV 0.999 1 36 hm5C_associated_SNPs_14959 0 0 1 0 2 KIF4A chrX:69622545 5'GT 69622545 Upstream 84bp
chrX 70777435 70777435 1 + G A rs34739713 70777454 + 70777434 70777474 41 TGCATCCTCATCATAGTATGCTATATCCTCTTTCTCATGGC TACATCCTCATCATAGTATGCTATATCCTCTTTCTCATGGC < 41bp 1 0.365791907973 1 0.148329377174377 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70777454 chrX:70777435 synonymous SNV . 0 2 hm5C_associated_SNPs_14961 0 0 1 0 2 OGT chrX:70777343 3'AG 70777343 Downstream 93bp
chrX 70777435 70777435 1 + G A rs34739713 70777454 + 70777434 70777474 41 TGCATCCTCATCATAGTATGCTATATCCTCTTTCTCATGGC TACATCCTCATCATAGTATGCTATATCCTCTTTCTCATGGC < 41bp 1 0.365791907973 1 0.148329377174377 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70777454 chrX:70777435 synonymous SNV . 0 2 hm5C_associated_SNPs_14961 0 0 1 0 2 OGT chrX:70777522 5'GT 70777522 Upstream 88bp
chrX 106893247 106893247 1 + C T rs147731055 106893248 + 106893228 106893268 41 CCGTTTCTTACCTATTCAGCCATGTCCCTTTATAATAGAGT CCGTTTCTTACCTATTCAGTCATGTCCCTTTATAATAGAGT < 41bp 1 0.068655392456067 1 0.106963068246841 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106893248 chrX:106893247 synonymous SNV . 0 20 hm5C_associated_SNPs_15019 2 0 1 0 1 PRPS1 chrX:106893170 3'AG 106893170 Downstream 78bp
chrX 106893247 106893247 1 + C T rs147731055 106893253 + 106893233 106893273 41 TCTTACCTATTCAGCCATGTCCCTTTATAATAGAGTAACTT TCTTACCTATTCAGTCATGTCCCTTTATAATAGAGTAACTT < 41bp 1 0.0786226963761706 1 0.0585769414901733 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106893253 chrX:106893247 synonymous SNV . 0 15 hm5C_associated_SNPs_15020 2 0 1 0 1 PRPS1 chrX:106893170 3'AG 106893170 Downstream 78bp
chrX 107834411 107834411 1 + C A rs142883891 107834422 + 107834402 107834442 41 AGCCTGGGGCTCCTGGGCTTCCAGGGCCTCCTGGCCCTGCT AGCCTGGGGATCCTGGGCTTCCAGGGCCTCCTGGCCCTGCT < 41bp 1 0.599465874889599 1 0.877705752849579 experiment 0.801068250220802 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107834422 chrX:107834411 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_15024 2 0 1 0 1 COL4A5 chrX:107834461 5'GT 107834461 Upstream 51bp
chrX 107909790 107909790 1 + T G rs61735627 107909782 + 107909762 107909802 41 GCGAAAAAGGCAAACCCGGTCAAGATGGTATTCCTGGACCA GCGAAAAAGGCAAACCCGGTCAAGATGGGATTCCTGGACCA < 41bp 1 0.770104029589891 1 0.787156164646149 experiment 0.459791940820218 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107909782 chrX:107909790 synonymous SNV . 0 29 hm5C_associated_SNPs_15025 1 0 1 0 2 COL4A5 chrX:107909726 3'AG 107909726 Downstream 65bp
chrX 107909790 107909790 1 + T G rs61735627 107909782 + 107909762 107909802 41 GCGAAAAAGGCAAACCCGGTCAAGATGGTATTCCTGGACCA GCGAAAAAGGCAAACCCGGTCAAGATGGGATTCCTGGACCA < 41bp 1 0.770104029589891 1 0.787156164646149 experiment 0.459791940820218 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107909782 chrX:107909790 synonymous SNV . 0 29 hm5C_associated_SNPs_15025 1 0 1 0 2 COL4A5 chrX:107909824 5'GT 107909824 Upstream 35bp
chrX 128691328 128691328 1 + G C rs753369725 128691345 + 128691325 128691365 41 GGGGACTGGATCAGAGAGCGCCGCTTTGAAATCCCTGATGA GGGCACTGGATCAGAGAGCGCCGCTTTGAAATCCCTGATGA < 41bp 1 0.353916578071219 1 0.0554416477680206 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128691345 chrX:128691328 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_15029 0 0 1 0 2 OCRL chrX:128691302 3'AG 128691302 Downstream 27bp
chrX 128691328 128691328 1 + G C rs753369725 128691345 + 128691325 128691365 41 GGGGACTGGATCAGAGAGCGCCGCTTTGAAATCCCTGATGA GGGCACTGGATCAGAGAGCGCCGCTTTGAAATCCCTGATGA < 41bp 1 0.353916578071219 1 0.0554416477680206 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128691345 chrX:128691328 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_15029 0 0 1 0 2 OCRL chrX:128691412 5'GT 128691412 Upstream 85bp
chrX 128695228 128695228 1 + G A rs138260625 128695224 + 128695204 128695244 41 TGTGAAGGAACAAGAATGGTCCATGGCTGTAGAGAGAGGTT TGTGAAGGAACAAGAATGGTCCATAGCTGTAGAGAGAGGTT < 41bp 1 0.130548622459759 1 0.0388039350509644 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128695224 chrX:128695228 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_15030 2 0 1 0 2 OCRL chrX:128695156 3'AG 128695156 Downstream 73bp
chrX 128695228 128695228 1 + G A rs138260625 128695224 + 128695204 128695244 41 TGTGAAGGAACAAGAATGGTCCATGGCTGTAGAGAGAGGTT TGTGAAGGAACAAGAATGGTCCATAGCTGTAGAGAGAGGTT < 41bp 1 0.130548622459759 1 0.0388039350509644 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128695224 chrX:128695228 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_15030 2 0 1 0 2 OCRL chrX:128695270 5'GT 128695270 Upstream 43bp
chrX 128695243 128695243 1 + T G rs190659938 128695224 + 128695204 128695244 41 TGTGAAGGAACAAGAATGGTCCATGGCTGTAGAGAGAGGTT TGTGAAGGAACAAGAATGGTCCATGGCTGTAGAGAGAGGGT < 41bp 1 0.0732192745539036 1 0.110553532838821 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128695224 chrX:128695243 synonymous SNV . 0 40 hm5C_associated_SNPs_15031 0 0 1 0 2 OCRL chrX:128695156 3'AG 128695156 Downstream 88bp
chrX 128695243 128695243 1 + T G rs190659938 128695224 + 128695204 128695244 41 TGTGAAGGAACAAGAATGGTCCATGGCTGTAGAGAGAGGTT TGTGAAGGAACAAGAATGGTCCATGGCTGTAGAGAGAGGGT < 41bp 1 0.0732192745539036 1 0.110553532838821 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128695224 chrX:128695243 synonymous SNV . 0 40 hm5C_associated_SNPs_15031 0 0 1 0 2 OCRL chrX:128695270 5'GT 128695270 Upstream 28bp
chrX 129185892 129185892 1 + A C rs373569866 129185891 + 129185871 129185911 41 ATCCTCCTGGGAGCTCAGATCAAGAAGGAGACGATCCGATG ATCCTCCTGGGAGCTCAGATCCAGAAGGAGACGATCCGATG < 41bp 1 0.459406910540981 1 0.796919226646423 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129185891 chrX:129185892 nonsynonymous SNV 0.974 2 22 hm5C_associated_SNPs_15033 0 0 1 0 2 BCORL1 chrX:129185835 3'AG 129185835 Downstream 58bp
chrX 129185892 129185892 1 + A C rs373569866 129185891 + 129185871 129185911 41 ATCCTCCTGGGAGCTCAGATCAAGAAGGAGACGATCCGATG ATCCTCCTGGGAGCTCAGATCCAGAAGGAGACGATCCGATG < 41bp 1 0.459406910540981 1 0.796919226646423 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129185891 chrX:129185892 nonsynonymous SNV 0.974 2 22 hm5C_associated_SNPs_15033 0 0 1 0 2 BCORL1 chrX:129185991 5'GT 129185991 Upstream 100bp
chrX 129535961 129535961 1 + C T rs16999683 129535973 + 129535953 129535993 41 TGCGCTGCCTTTCCCGGGCGCTGATTCCTGAGTGCTGAGCG TGCGCTGCTTTTCCCGGGCGCTGATTCCTGAGTGCTGAGCG < 41bp 1 0.445570825907064 1 0.0220198035240173 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBMX2 ENSG00000134597 UTR5 Human protein_coding chrX:129535973 chrX:129535961 . . 0 9 hm5C_associated_SNPs_15034 0 0 1 0 1 RBMX2 chrX:129536011 5'GT 129536011 Upstream 51bp
chrX 131202543 131202543 1 + A T rs569986933 131202534 + 131202514 131202554 41 ACACAGATTAAAAGAAATACCTTTGTGGGAACTCCATTTTG ACACAGATTAAAAGAAATACCTTTGTGGGTACTCCATTTTG < 41bp 1 0.343573461397665 1 0.0295723378658295 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STK26 ENSG00000134602 CDS Human protein_coding chrX:131202534 chrX:131202543 synonymous SNV . 0 30 hm5C_associated_SNPs_15036 0 0 1 0 1 STK26 chrX:131202597 5'GT 131202597 Upstream 55bp
chrX 133594293 133594293 1 + C G rs747134233 133594312 + 133594292 133594332 41 ACCGGCTTCCTCCTCCTGAGCAGTCAGCCCGCGCGCCGGCC AGCGGCTTCCTCCTCCTGAGCAGTCAGCCCGCGCGCCGGCC < 41bp 1 0.558826215456604 1 0.19597589969635 experiment 0.882347569086791 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control HPRT1 ENSG00000165704 UTR5 Human protein_coding chrX:133594312 chrX:133594293 . . 0 2 hm5C_associated_SNPs_15037 0 0 1 0 1 HPRT1 chrX:133594368 5'GT 133594368 Upstream 76bp
chrX 133594321 133594321 1 + C A rs776633368 133594312 + 133594292 133594332 41 ACCGGCTTCCTCCTCCTGAGCAGTCAGCCCGCGCGCCGGCC ACCGGCTTCCTCCTCCTGAGCAGTCAGCCAGCGCGCCGGCC < 41bp 1 0.56193486718135 1 0.133972853422165 experiment 0.876130265637301 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control HPRT1 ENSG00000165704 UTR5 Human protein_coding chrX:133594312 chrX:133594321 . . 0 30 hm5C_associated_SNPs_15038 0 0 1 0 1 HPRT1 chrX:133594368 5'GT 133594368 Upstream 48bp
chrX 133594321 133594321 1 + C A rs776633368 133594332 + 133594312 133594352 41 CAGTCAGCCCGCGCGCCGGCCGGCTCCGTTATGGCGACCCG CAGTCAGCCAGCGCGCCGGCCGGCTCCGTTATGGCGACCCG < 41bp 1 0.728871338534056 1 0.101833820343018 experiment 0.542257322931887 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HPRT1 ENSG00000165704 UTR5 Human protein_coding chrX:133594332 chrX:133594321 . . 0 10 hm5C_associated_SNPs_15039 0 0 1 0 1 HPRT1 chrX:133594368 5'GT 133594368 Upstream 48bp
chrX 135067814 135067814 1 + A G rs782090744 135067817 + 135067797 135067837 41 GGCGGCGGAGAGGCTAGAGCCATGGACGAGGAGATCGTGTC GGCGGCGGAGAGGCTAGGGCCATGGACGAGGAGATCGTGTC < 41bp 1 0.645595124476043 1 0.715415716171265 experiment 0.708809751047915 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135067817 chrX:135067814 synonymous SNV . 0 18 hm5C_associated_SNPs_15040 1 0 0 0 1 SLC9A6 chrX:135067762 3'AG 135067762 Downstream 53bp
chrX 148626932 148626932 1 + G A rs781910875 148626947 + 148626927 148626967 41 ACTCCGGACCGCCCCAAAGACTCCATGGGATGGACCTGAGT ACTCCAGACCGCCCCAAAGACTCCATGGGATGGACCTGAGT < 41bp 1 0.788275371945939 1 0.986275911331177 experiment 0.423449256108122 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|28418038;GSE74771;RNA-BisSeq;293T;Control CXorf40A ENSG00000197620 UTR5 Human protein_coding chrX:148626947 chrX:148626932 . . 0 6 hm5C_associated_SNPs_15043 0 0 0 0 1 CXorf40A chrX:148626914 3'AG 148626914 Downstream 19bp
chrX 148628320 148628320 1 + G A rs147733282 148628325 + 148628305 148628345 41 ACTTTGCAATGCCCCGAAGACTTAACTCCCGATGAGGTTGT ACTTTGCAATGCCCCAAAGACTTAACTCCCGATGAGGTTGT < 41bp 1 0.379876449291984 1 0.12390124797821 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CXorf40A ENSG00000197620 CDS Human protein_coding chrX:148628325 chrX:148628320 nonsynonymous SNV 0.004 1 16 hm5C_associated_SNPs_15044 0 0 0 0 1 CXorf40A chrX:148628285 3'AG 148628285 Downstream 36bp
chrX 149896168 149896168 1 + A G rs138576798 149896183 + 149896163 149896203 41 ATTTTATCCTTGATGTTCCCCTTGGAGTGATCAGCAGAGTG ATTTTGTCCTTGATGTTCCCCTTGGAGTGATCAGCAGAGTG < 41bp 1 0.326783293063526 1 0.0384005606174469 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149896183 chrX:149896168 nonsynonymous SNV 0.943 1 6 hm5C_associated_SNPs_15045 0 0 1 0 2 MTMR1 chrX:149896156 3'AG 149896156 Downstream 13bp
chrX 149896168 149896168 1 + A G rs138576798 149896183 + 149896163 149896203 41 ATTTTATCCTTGATGTTCCCCTTGGAGTGATCAGCAGAGTG ATTTTGTCCTTGATGTTCCCCTTGGAGTGATCAGCAGAGTG < 41bp 1 0.326783293063526 1 0.0384005606174469 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149896183 chrX:149896168 nonsynonymous SNV 0.943 1 6 hm5C_associated_SNPs_15045 0 0 1 0 2 MTMR1 chrX:149896263 5'GT 149896263 Upstream 96bp
chrX 151806802 151806802 1 + A G rs183563437 151806795 + 151806775 151806815 41 TGCCCGAAGTCGTCCTGAACCTCTTCAACTGGTAAGCGGGC TGCCCGAAGTCGTCCTGAACCTCTTCAGCTGGTAAGCGGGC < 41bp 1 0.355874269292224 1 0.421260297298431 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GABRQ ENSG00000147402 CDS Human other chrX:151806795 chrX:151806802 nonsynonymous SNV 0.992 0 28 hm5C_associated_SNPs_15048 0 0 0 0 1 GABRQ chrX:151806805 5'GT 151806805 Upstream 4bp
chrX 153035893 153035893 1 + G A rs73640825 153035874 + 153035854 153035894 41 CTCCTTTTATGACTGCAGTGCCGTCCAGGCCTTGGAGGCGG CTCCTTTTATGACTGCAGTGCCGTCCAGGCCTTGGAGGCAG < 41bp 1 0.0342609112730432 1 0.0872208774089813 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153035874 chrX:153035893 synonymous SNV . 0 40 hm5C_associated_SNPs_15057 0 0 0 0 1 PLXNB3 chrX:153035901 5'GT 153035901 Upstream 9bp
chrX 153238288 153238288 1 + A C rs6655268 153238268 + 153238248 153238288 41 CCCCAGCGAGGCGAGTGAGGCGAAATACCCGTATGGTGATA CCCCAGCGAGGCGAGTGAGGCGAAATACCCGTATGGTGATC < 41bp 1 0.53204074882106 1 0.83087682723999 experiment 0.93591850235788 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM187 ENSG00000177854 UTR5 Human protein_coding chrX:153238268 chrX:153238288 . . 0 41 hm5C_associated_SNPs_15058 0 0 1 0 1 TMEM187 chrX:153238311 5'GT 153238311 Upstream 24bp
chrX 153608120 153608120 1 + C A rs782051850 153608138 + 153608118 153608158 41 CCCAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA CCAAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA < 41bp 1 0.397354706097639 1 0.108044028282166 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608138 chrX:153608120 synonymous SNV . 0 3 hm5C_associated_SNPs_15059 0 0 1 0 2 EMD chrX:153608050 3'AG 153608050 Downstream 71bp
chrX 153608120 153608120 1 + C A rs782051850 153608138 + 153608118 153608158 41 CCCAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA CCAAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA < 41bp 1 0.397354706097639 1 0.108044028282166 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608138 chrX:153608120 synonymous SNV . 0 3 hm5C_associated_SNPs_15059 0 0 1 0 2 EMD chrX:153608154 5'GT 153608154 Upstream 35bp
chrX 153608120 153608120 1 + C A rs782051850 153608140 + 153608120 153608160 41 CAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGAGA AAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGAGA < 41bp 1 0.245959422634764 1 0.117885857820511 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608140 chrX:153608120 synonymous SNV . 0 1 hm5C_associated_SNPs_15060 0 0 1 0 2 EMD chrX:153608050 3'AG 153608050 Downstream 71bp
chrX 153608120 153608120 1 + C A rs782051850 153608140 + 153608120 153608160 41 CAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGAGA AAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGAGA < 41bp 1 0.245959422634764 1 0.117885857820511 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608140 chrX:153608120 synonymous SNV . 0 1 hm5C_associated_SNPs_15060 0 0 1 0 2 EMD chrX:153608154 5'GT 153608154 Upstream 35bp
chrX 153626649 153626649 1 + A C rs915941 153626641 + 153626621 153626661 41 CGTCTGACAGAGCGTCCACCCGTCTTCGACAGGACTCTATG CGTCTGACAGAGCGTCCACCCGTCTTCGCCAGGACTCTATG < 41bp 1 0.243203948354332 1 0.11982387304306 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10 ENSG00000147403 UTR5 Human protein_coding chrX:153626641 chrX:153626649 . . 0 29 hm5C_associated_SNPs_15061 0 0 1 0 1 RPL10 chrX:153626735 5'GT 153626735 Upstream 87bp
chrX 153678852 153678852 1 + G C rs192598713 153678864 + 153678844 153678884 41 GGACTCCAGGCACCCGCTCCCCTGCGACCATGCCAGGCACG GGACTCCACGCACCCGCTCCCCTGCGACCATGCCAGGCACG < 41bp 1 0.398342207602665 1 0.521174848079681 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM50A ENSG00000071859 UTR3 Human protein_coding chrX:153678864 chrX:153678852 . . 0 9 hm5C_associated_SNPs_15074 0 0 1 0 1 FAM50A chrX:153678772 3'AG 153678772 Downstream 81bp
chrX 153678858 153678858 1 + C T rs782244383 153678864 + 153678844 153678884 41 GGACTCCAGGCACCCGCTCCCCTGCGACCATGCCAGGCACG GGACTCCAGGCACCTGCTCCCCTGCGACCATGCCAGGCACG < 41bp 1 0.454697012477006 1 0.464275121688843 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM50A ENSG00000071859 UTR3 Human protein_coding chrX:153678864 chrX:153678858 . . 0 15 hm5C_associated_SNPs_15075 0 0 1 0 1 FAM50A chrX:153678772 3'AG 153678772 Downstream 87bp
chrX 153678868 153678868 1 + C T rs183312820 153678864 + 153678844 153678884 41 GGACTCCAGGCACCCGCTCCCCTGCGACCATGCCAGGCACG GGACTCCAGGCACCCGCTCCCCTGTGACCATGCCAGGCACG < 41bp 1 0.54947113315893 1 0.27182948589325 experiment 0.901057733682141 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM50A ENSG00000071859 UTR3 Human protein_coding chrX:153678864 chrX:153678868 . . 0 25 hm5C_associated_SNPs_15076 0 0 1 0 1 FAM50A chrX:153678772 3'AG 153678772 Downstream 97bp
chrX 154005148 154005148 1 + G A rs1800533 154005135 + 154005115 154005155 41 AAAAGAGGTAGAATTGGTTTCTGAGTAGTGAAGGCCACTTG AAAAGAGGTAGAATTGGTTTCTGAGTAGTGAAGACCACTTG < 41bp 1 0.623513504554779 1 0.412526071071625 experiment 0.752972990890441 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DKC1 ENSG00000130826 UTR3 Human protein_coding chrX:154005135 chrX:154005148 . . 0 34 hm5C_associated_SNPs_15077 1 0 1 0 1 DKC1 chrX:154005074 3'AG 154005074 Downstream 75bp
chr15 74335395 74335395 1 + C T ACC 74335388 + 74335368 74335408 41 TGACCTCCAGCTGGAAGGCCCCAGCACCCTCAGGGTCCTGG TGACCTCCAGCTGGAAGGCCCCAGCACTCTCAGGGTCCTGG < 41bp 1 0.151705878865535 1 0.120758384466171 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74335388 chr15:74335395 synonymous SNV . 0 28 hm5C_associated_SNPs_15081 0 0 0 1 2 PML chr15:74335330 3'AG 74335330 Downstream 66bp
chr15 74335395 74335395 1 + C T ACC 74335388 + 74335368 74335408 41 TGACCTCCAGCTGGAAGGCCCCAGCACCCTCAGGGTCCTGG TGACCTCCAGCTGGAAGGCCCCAGCACTCTCAGGGTCCTGG < 41bp 1 0.151705878865535 1 0.120758384466171 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74335388 chr15:74335395 synonymous SNV . 0 28 hm5C_associated_SNPs_15081 0 0 0 1 2 PML chr15:74335480 5'GT 74335480 Upstream 86bp
chr13 26923272 26923272 1 + G T ACC 26923264 + 26923244 26923284 41 TCTTCAAAAGGTGTTTCTGTCTCATGCTGATAGGAAGGTGT TCTTCAAAAGGTGTTTCTGTCTCATGCTTATAGGAAGGTGT < 41bp 1 0.448725984912422 1 0.300919532775879 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK8 ENSG00000132964 CDS Human protein_coding chr13:26923264 chr13:26923272 nonsynonymous SNV 0.998 3 29 hm5C_associated_SNPs_15082 0 0 1 0 2 CDK8 chr13:26923209 3'AG 26923209 Downstream 64bp
chr13 26923272 26923272 1 + G T ACC 26923264 + 26923244 26923284 41 TCTTCAAAAGGTGTTTCTGTCTCATGCTGATAGGAAGGTGT TCTTCAAAAGGTGTTTCTGTCTCATGCTTATAGGAAGGTGT < 41bp 1 0.448725984912422 1 0.300919532775879 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK8 ENSG00000132964 CDS Human protein_coding chr13:26923264 chr13:26923272 nonsynonymous SNV 0.998 3 29 hm5C_associated_SNPs_15082 0 0 1 0 2 CDK8 chr13:26923319 5'GT 26923319 Upstream 48bp
chr9 101765834 101765834 1 + A G ACC 101765814 + 101765794 101765834 41 AGAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTCTA AGAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTCTG < 41bp 1 0.741007600149796 1 0.91386342048645 experiment 0.517984799700409 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765814 chr9:101765834 nonsynonymous SNV 0.001 1 41 hm5C_associated_SNPs_15083 0 0 0 0 2 COL15A1 chr9:101765735 3'AG 101765735 Downstream 100bp
chr9 101765834 101765834 1 + A G ACC 101765814 + 101765794 101765834 41 AGAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTCTA AGAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTCTG < 41bp 1 0.741007600149796 1 0.91386342048645 experiment 0.517984799700409 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765814 chr9:101765834 nonsynonymous SNV 0.001 1 41 hm5C_associated_SNPs_15083 0 0 0 0 2 COL15A1 chr9:101765869 5'GT 101765869 Upstream 36bp
chr9 101765834 101765834 1 + A G ACC 101765832 + 101765812 101765852 41 CACCGGGGGACCAACCCTCTCTATGTCCACGGAGAACCCAG CACCGGGGGACCAACCCTCTCTGTGTCCACGGAGAACCCAG < 41bp 1 0.460029646728487 1 0.101806402206421 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765832 chr9:101765834 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_15084 0 0 0 0 2 COL15A1 chr9:101765735 3'AG 101765735 Downstream 100bp
chr9 101765834 101765834 1 + A G ACC 101765832 + 101765812 101765852 41 CACCGGGGGACCAACCCTCTCTATGTCCACGGAGAACCCAG CACCGGGGGACCAACCCTCTCTGTGTCCACGGAGAACCCAG < 41bp 1 0.460029646728487 1 0.101806402206421 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765832 chr9:101765834 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_15084 0 0 0 0 2 COL15A1 chr9:101765869 5'GT 101765869 Upstream 36bp
chr7 128846172 128846172 1 + C G ACC 128846171 + 128846151 128846191 41 CACCTGCTCACCTGGTCACTCCCCTTTGTCCTCACTGTGGC CACCTGCTCACCTGGTCACTCGCCTTTGTCCTCACTGTGGC < 41bp 1 0.540261417693071 1 0.183450013399124 experiment 0.919477164613859 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMO ENSG00000128602 CDS Human protein_coding chr7:128846171 chr7:128846172 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_15085 0 0 0 0 1 SMO chr7:128846210 5'GT 128846210 Upstream 39bp
chr19 45801154 45801154 1 + G T ACC 45801142 + 45801122 45801162 41 CACTGGCCCATGAGGCTGCACCCCTGCCCGCCGGGCGGCCC CACTGGCCCATGAGGCTGCACCCCTGCCCGCCTGGCGGCCC < 41bp 1 0.233984815956625 1 0.0154831409454346 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801142 chr19:45801154 nonsynonymous SNV 0.633 2 33 hm5C_associated_SNPs_15086 0 0 1 0 1 MARK4 chr19:45801212 5'GT 45801212 Upstream 59bp
chr19 45801154 45801154 1 + G T ACC 45801143 + 45801123 45801163 41 ACTGGCCCATGAGGCTGCACCCCTGCCCGCCGGGCGGCCCC ACTGGCCCATGAGGCTGCACCCCTGCCCGCCTGGCGGCCCC < 41bp 1 0.239641660365016 1 0.132094115018845 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801143 chr19:45801154 nonsynonymous SNV 0.633 2 32 hm5C_associated_SNPs_15087 0 0 1 0 1 MARK4 chr19:45801212 5'GT 45801212 Upstream 59bp
chr19 45801154 45801154 1 + G T ACC 45801144 + 45801124 45801164 41 CTGGCCCATGAGGCTGCACCCCTGCCCGCCGGGCGGCCCCG CTGGCCCATGAGGCTGCACCCCTGCCCGCCTGGCGGCCCCG < 41bp 1 0.141421775837247 1 0.0627864897251129 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801144 chr19:45801154 nonsynonymous SNV 0.633 2 31 hm5C_associated_SNPs_15088 0 0 1 0 1 MARK4 chr19:45801212 5'GT 45801212 Upstream 59bp
chr19 45801154 45801154 1 + G T ACC 45801145 + 45801125 45801165 41 TGGCCCATGAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGC TGGCCCATGAGGCTGCACCCCTGCCCGCCTGGCGGCCCCGC < 41bp 1 0.432266578907592 1 0.139462620019913 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801145 chr19:45801154 nonsynonymous SNV 0.633 2 30 hm5C_associated_SNPs_15089 0 0 1 0 1 MARK4 chr19:45801212 5'GT 45801212 Upstream 59bp
chr19 45801154 45801154 1 + G T ACC 45801148 + 45801128 45801168 41 CCCATGAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCCCC CCCATGAGGCTGCACCCCTGCCCGCCTGGCGGCCCCGCCCC < 41bp 1 0.4484534014679 1 0.220012128353119 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801148 chr19:45801154 nonsynonymous SNV 0.633 2 27 hm5C_associated_SNPs_15090 0 0 1 0 1 MARK4 chr19:45801212 5'GT 45801212 Upstream 59bp
chr19 45801154 45801154 1 + G T ACC 45801149 + 45801129 45801169 41 CCATGAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCCCCA CCATGAGGCTGCACCCCTGCCCGCCTGGCGGCCCCGCCCCA < 41bp 1 0.332053697487611 1 0.110713571310043 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801149 chr19:45801154 nonsynonymous SNV 0.633 2 26 hm5C_associated_SNPs_15091 0 0 1 0 1 MARK4 chr19:45801212 5'GT 45801212 Upstream 59bp
chr19 45801154 45801154 1 + G T ACC 45801150 + 45801130 45801170 41 CATGAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCCCCAC CATGAGGCTGCACCCCTGCCCGCCTGGCGGCCCCGCCCCAC < 41bp 1 0.694170188737574 1 0.138041585683823 experiment 0.611659622524852 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801150 chr19:45801154 nonsynonymous SNV 0.633 2 25 hm5C_associated_SNPs_15092 0 0 1 0 1 MARK4 chr19:45801212 5'GT 45801212 Upstream 59bp
chr19 45801154 45801154 1 + G T ACC 45801152 + 45801132 45801172 41 TGAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCCCCACCA TGAGGCTGCACCCCTGCCCGCCTGGCGGCCCCGCCCCACCA < 41bp 1 0.258848202612495 1 0.220105826854706 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801152 chr19:45801154 nonsynonymous SNV 0.633 2 23 hm5C_associated_SNPs_15093 0 0 1 0 1 MARK4 chr19:45801212 5'GT 45801212 Upstream 59bp
chr19 45801154 45801154 1 + G T ACC 45801153 + 45801133 45801173 41 GAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCCCCACCAC GAGGCTGCACCCCTGCCCGCCTGGCGGCCCCGCCCCACCAC < 41bp 1 0.635263197452245 1 0.761174440383911 experiment 0.72947360509551 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801153 chr19:45801154 nonsynonymous SNV 0.633 2 22 hm5C_associated_SNPs_15094 0 0 1 0 1 MARK4 chr19:45801212 5'GT 45801212 Upstream 59bp
chr22 45822021 45822021 1 + G T ACC 45822019 + 45821999 45822039 41 CAGGAGCAGCTGGAGCAGATCCGCCTAGTCCAGAAGCAGCA CAGGAGCAGCTGGAGCAGATCCTCCTAGTCCAGAAGCAGCA < 41bp 1 0.115665593072081 1 0.292618453502655 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIBC2 ENSG00000128408 CDS Human protein_coding chr22:45822019 chr22:45822021 nonsynonymous SNV 0.535 0 23 hm5C_associated_SNPs_15095 0 0 0 0 1 RIBC2 chr22:45822055 5'GT 45822055 Upstream 35bp
chr19 49994074 49994074 1 + C G ACC 49994055 + 49994035 49994075 41 GGTATGCTGCCCCACAAAACCAAGCGAGGCCAGGCCGCTCT GGTATGCTGCCCCACAAAACCAAGCGAGGCCAGGCCGCTGT < 41bp 1 0.793308369787748 1 0.631216168403625 experiment 0.413383260424504 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49994055 chr19:49994074 nonsynonymous SNV 0.987 3 40 hm5C_associated_SNPs_15096 0 0 1 0 2 RPL13A chr19:49994036 3'AG 49994036 Downstream 39bp
chr19 49994074 49994074 1 + C G ACC 49994055 + 49994035 49994075 41 GGTATGCTGCCCCACAAAACCAAGCGAGGCCAGGCCGCTCT GGTATGCTGCCCCACAAAACCAAGCGAGGCCAGGCCGCTGT < 41bp 1 0.793308369787748 1 0.631216168403625 experiment 0.413383260424504 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49994055 chr19:49994074 nonsynonymous SNV 0.987 3 40 hm5C_associated_SNPs_15096 0 0 1 0 2 RPL13A chr19:49994121 5'GT 49994121 Upstream 48bp
chr10 118306857 118306857 1 + G T ACC 118306849 + 118306829 118306869 41 CTCGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTAC CTCGGCTGCTTCAGTGATGACTCCCCATTGTCAGGAATTAC < 41bp 1 0.282054889157742 1 0.0227570831775665 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306849 chr10:118306857 nonsynonymous SNV 0.866 5 29 hm5C_associated_SNPs_15098 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 52bp
chr10 118306857 118306857 1 + G T ACC 118306851 + 118306831 118306871 41 CGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGG CGGCTGCTTCAGTGATGACTCCCCATTGTCAGGAATTACGG < 41bp 1 0.726865980746256 1 0.0616744756698608 experiment 0.546268038507489 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306851 chr10:118306857 nonsynonymous SNV 0.866 5 27 hm5C_associated_SNPs_15099 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 52bp
chr10 118306857 118306857 1 + G T ACC 118306853 + 118306833 118306873 41 GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAA GCTGCTTCAGTGATGACTCCCCATTGTCAGGAATTACGGAA < 41bp 1 0.14132395775921 1 0.101627439260483 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306853 chr10:118306857 nonsynonymous SNV 0.866 5 25 hm5C_associated_SNPs_15100 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 52bp
chr10 118306857 118306857 1 + G T ACC 118306854 + 118306834 118306874 41 CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAAA CTGCTTCAGTGATGACTCCCCATTGTCAGGAATTACGGAAA < 41bp 1 0.198260105923783 1 0.361791372299194 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306854 chr10:118306857 nonsynonymous SNV 0.866 5 24 hm5C_associated_SNPs_15101 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 52bp
chr3 185337191 185337191 1 + G T ACC 185337187 + 185337167 185337207 41 CTTCTATCCTAAATTAAAGTCTGGGGGTTACCAAGCAGTGA CTTCTATCCTAAATTAAAGTCTGGTGGTTACCAAGCAGTGA < 41bp 1 0.624400149492812 1 0.220503300428391 experiment 0.751199701014377 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SENP2 ENSG00000163904 CDS Human protein_coding chr3:185337187 chr3:185337191 synonymous SNV . 0 25 hm5C_associated_SNPs_15102 0 0 0 0 1 SENP2 chr3:185337290 5'GT 185337290 Upstream 100bp
chr9 2077741 2077741 1 + G T ACC 2077760 + 2077740 2077780 41 TGCCCTCCTAATTAATGGGACCCTAAAGCATTACCAGGTAA TTCCCTCCTAATTAATGGGACCCTAAAGCATTACCAGGTAA < 41bp 1 0.0909975307093453 1 0.0259595811367035 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2077760 chr9:2077741 nonsynonymous SNV 0.997 1 2 hm5C_associated_SNPs_15104 0 0 0 0 1 SMARCA2 chr9:2077776 5'GT 2077776 Upstream 36bp
chr7 101821789 101821789 1 + T C ACC 101821775 + 101821755 101821795 41 GCCATAGAGGTGCTGACCCGCTCCAGCCTAGAAGTTGAGTT GCCATAGAGGTGCTGACCCGCTCCAGCCTAGAAGCTGAGTT < 41bp 1 0.511861745616643 1 0.881910860538483 experiment 0.976276508766713 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101821775 chr7:101821789 nonsynonymous SNV 0.999 0 35 hm5C_associated_SNPs_15105 0 0 1 0 2 CUX1 chr7:101821749 3'AG 101821749 Downstream 41bp
chr7 101821789 101821789 1 + T C ACC 101821775 + 101821755 101821795 41 GCCATAGAGGTGCTGACCCGCTCCAGCCTAGAAGTTGAGTT GCCATAGAGGTGCTGACCCGCTCCAGCCTAGAAGCTGAGTT < 41bp 1 0.511861745616643 1 0.881910860538483 experiment 0.976276508766713 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101821775 chr7:101821789 nonsynonymous SNV 0.999 0 35 hm5C_associated_SNPs_15105 0 0 1 0 2 CUX1 chr7:101821755 3'AG 101821755 Downstream 35bp
chr7 73636002 73636002 1 + G A ACC 73636001 + 73635981 73636021 41 TGGAGTATTACAACTGGGGGCGGTTCTCGAAGCCCCCAGAA TGGAGTATTACAACTGGGGGCAGTTCTCGAAGCCCCCAGAA < 41bp 1 0.165059183040314 1 0.212604284286499 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636001 chr7:73636002 nonsynonymous SNV 0.023 0 22 hm5C_associated_SNPs_15107 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 36bp
chr7 73636002 73636002 1 + G A ACC 73636001 + 73635981 73636021 41 TGGAGTATTACAACTGGGGGCGGTTCTCGAAGCCCCCAGAA TGGAGTATTACAACTGGGGGCAGTTCTCGAAGCCCCCAGAA < 41bp 1 0.165059183040314 1 0.212604284286499 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636001 chr7:73636002 nonsynonymous SNV 0.023 0 22 hm5C_associated_SNPs_15107 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 21bp
chr7 73636002 73636002 1 + G A ACC 73636013 + 73635993 73636033 41 ACTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAG ACTGGGGGCAGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAG < 41bp 1 0.116622796201118 1 0.128506511449814 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636013 chr7:73636002 nonsynonymous SNV 0.023 0 10 hm5C_associated_SNPs_15108 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 36bp
chr7 73636002 73636002 1 + G A ACC 73636013 + 73635993 73636033 41 ACTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAG ACTGGGGGCAGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAG < 41bp 1 0.116622796201118 1 0.128506511449814 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636013 chr7:73636002 nonsynonymous SNV 0.023 0 10 hm5C_associated_SNPs_15108 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 21bp
chr7 73636002 73636002 1 + G A ACC 73636014 + 73635994 73636034 41 CTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGG CTGGGGGCAGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGG < 41bp 1 0.387584569165803 1 0.265425741672516 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636014 chr7:73636002 nonsynonymous SNV 0.023 0 9 hm5C_associated_SNPs_15109 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 36bp
chr7 73636002 73636002 1 + G A ACC 73636014 + 73635994 73636034 41 CTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGG CTGGGGGCAGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGG < 41bp 1 0.387584569165803 1 0.265425741672516 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636014 chr7:73636002 nonsynonymous SNV 0.023 0 9 hm5C_associated_SNPs_15109 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 21bp
chr7 73636002 73636002 1 + G A ACC 73636015 + 73635995 73636035 41 TGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGA TGGGGGCAGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGA < 41bp 1 0.211519896216554 1 0.196709543466568 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636015 chr7:73636002 nonsynonymous SNV 0.023 0 8 hm5C_associated_SNPs_15110 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 36bp
chr7 73636002 73636002 1 + G A ACC 73636015 + 73635995 73636035 41 TGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGA TGGGGGCAGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGA < 41bp 1 0.211519896216554 1 0.196709543466568 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636015 chr7:73636002 nonsynonymous SNV 0.023 0 8 hm5C_associated_SNPs_15110 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 21bp
chr7 73636002 73636002 1 + G A ACC 73636016 + 73635996 73636036 41 GGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGAC GGGGGCAGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGAC < 41bp 1 0.519735450539891 1 0.44497475028038 experiment 0.960529098920218 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636016 chr7:73636002 nonsynonymous SNV 0.023 0 7 hm5C_associated_SNPs_15111 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 36bp
chr7 73636002 73636002 1 + G A ACC 73636016 + 73635996 73636036 41 GGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGAC GGGGGCAGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGAC < 41bp 1 0.519735450539891 1 0.44497475028038 experiment 0.960529098920218 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636016 chr7:73636002 nonsynonymous SNV 0.023 0 7 hm5C_associated_SNPs_15111 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 21bp
chr7 73636002 73636002 1 + G A ACC 73636017 + 73635997 73636037 41 GGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGACA GGGGCAGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGACA < 41bp 1 0.653594655349166 1 0.888792872428894 experiment 0.692810689301668 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636017 chr7:73636002 nonsynonymous SNV 0.023 0 6 hm5C_associated_SNPs_15112 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 36bp
chr7 73636002 73636002 1 + G A ACC 73636017 + 73635997 73636037 41 GGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGACA GGGGCAGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGACA < 41bp 1 0.653594655349166 1 0.888792872428894 experiment 0.692810689301668 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636017 chr7:73636002 nonsynonymous SNV 0.023 0 6 hm5C_associated_SNPs_15112 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 21bp
chrX 49093667 49093667 1 + T A ACC 49093654 + 49093634 49093674 41 GATCAACCCTGCGGTGGGCTCTGGCCTCAGCCCTCTGCTGC GATCAACCCTGCGGTGGGCTCTGGCCTCAGCCCACTGCTGC < 41bp 1 0.785848107997862 1 0.516132950782776 experiment 0.428303784004277 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49093654 chrX:49093667 synonymous SNV . 0 34 hm5C_associated_SNPs_15113 0 0 1 1 1 CCDC22 chrX:49093730 5'GT 49093730 Upstream 64bp
chr14 75359678 75359678 1 + C A ACC 75359687 + 75359667 75359707 41 ACAGCCTCCTTCTGGCAAACCTGGTAGGCTTCCAACTCCCA ACAGCCTCCTTATGGCAAACCTGGTAGGCTTCCAACTCCCA < 41bp 1 0.675063434511743 1 0.0473174154758453 experiment 0.649873130976513 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DLST ENSG00000119689 CDS Human protein_coding chr14:75359687 chr14:75359678 nonsynonymous SNV 0.242 1 12 hm5C_associated_SNPs_15116 0 0 1 0 1 DLST chr14:75359689 5'GT 75359689 Upstream 12bp
chr19 42410903 42410903 1 + G T ACC 42410885 + 42410865 42410905 41 AGGAATTTTGCCGCCTGAGACCCCTCCTGTCTCAGCTTGGG AGGAATTTTGCCGCCTGAGACCCCTCCTGTCTCAGCTTTGG < 41bp 1 0.153892038411056 1 0.0369838774204254 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42410885 chr19:42410903 nonsynonymous SNV 0.964 2 39 hm5C_associated_SNPs_15117 0 0 1 0 2 ARHGEF1 chr19:42410855 3'AG 42410855 Downstream 49bp
chr19 42410903 42410903 1 + G T ACC 42410885 + 42410865 42410905 41 AGGAATTTTGCCGCCTGAGACCCCTCCTGTCTCAGCTTGGG AGGAATTTTGCCGCCTGAGACCCCTCCTGTCTCAGCTTTGG < 41bp 1 0.153892038411056 1 0.0369838774204254 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42410885 chr19:42410903 nonsynonymous SNV 0.964 2 39 hm5C_associated_SNPs_15117 0 0 1 0 2 ARHGEF1 chr19:42410955 5'GT 42410955 Upstream 53bp
chr11 14865507 14865507 1 + G T ACC 14865490 + 14865470 14865510 41 TCCTGCATTAGAATTGATGGCTCTATACGTGGCAGCTGCCA TCCTGCATTAGAATTGATGGCTCTATACGTGGCAGCTTCCA < 41bp 1 0.412207910845796 1 0.86513876914978 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE3B ENSG00000152270 CDS Human protein_coding chr11:14865490 chr11:14865507 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_15120 0 0 1 0 1 PDE3B chr11:14865572 5'GT 14865572 Upstream 66bp
chr5 142264925 142264925 1 + G T ACC 142264910 + 142264890 142264930 41 ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTT ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTTAATTT < 41bp 1 0.0965325057163548 1 0.382794857025146 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142264910 chr5:142264925 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_15121 0 0 1 0 2 ARHGAP26 chr5:142264863 3'AG 142264863 Downstream 63bp
chr5 142264925 142264925 1 + G T ACC 142264910 + 142264890 142264930 41 ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTT ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTTAATTT < 41bp 1 0.0965325057163548 1 0.382794857025146 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142264910 chr5:142264925 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_15121 0 0 1 0 2 ARHGAP26 chr5:142264964 5'GT 142264964 Upstream 40bp
chr6 42957364 42957364 1 + G T ACC 42957366 + 42957346 42957386 41 CAGGAGCCCCCCAAGGTTGCCAAATGCACAGCCAAGCCTAG CAGGAGCCCCCCAAGGTTTCCAAATGCACAGCCAAGCCTAG < 41bp 1 0.25475966155567 1 0.785374283790588 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42957366 chr6:42957364 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_15123 0 0 1 0 2 PPP2R5D chr6:42957349 3'AG 42957349 Downstream 16bp
chr6 42957364 42957364 1 + G T ACC 42957366 + 42957346 42957386 41 CAGGAGCCCCCCAAGGTTGCCAAATGCACAGCCAAGCCTAG CAGGAGCCCCCCAAGGTTTCCAAATGCACAGCCAAGCCTAG < 41bp 1 0.25475966155567 1 0.785374283790588 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42957366 chr6:42957364 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_15123 0 0 1 0 2 PPP2R5D chr6:42957426 5'GT 42957426 Upstream 63bp
chr6 151647016 151647016 1 + C A ACC 151647007 + 151646987 151647027 41 ACTTAAAATATGCTGGGGACCATCACCATCACAGGTAAGGC ACTTAAAATATGCTGGGGACCATCACCATAACAGGTAAGGC < 41bp 1 0.155934729927981 1 0.145742744207382 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control AKAP12 ENSG00000131016 CDS Human protein_coding chr6:151647007 chr6:151647016 synonymous SNV . 0 30 hm5C_associated_SNPs_15125 0 0 1 0 1 AKAP12 chr6:151647020 5'GT 151647020 Upstream 5bp
chr16 31121421 31121421 1 + C A ACC 31121439 + 31121419 31121459 41 TTCCAGAAGCTGACAGACTTCCCTCCGGTGAGTGCTGGGCC TTACAGAAGCTGACAGACTTCCCTCCGGTGAGTGCTGGGCC < 41bp 1 0.0953749123812944 1 0.106821596622467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCKDK ENSG00000103507 CDS Human protein_coding chr16:31121439 chr16:31121421 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_15126 0 0 1 2 2 BCKDK chr16:31121398 3'AG 31121398 Downstream 24bp
chr16 31121421 31121421 1 + C A ACC 31121439 + 31121419 31121459 41 TTCCAGAAGCTGACAGACTTCCCTCCGGTGAGTGCTGGGCC TTACAGAAGCTGACAGACTTCCCTCCGGTGAGTGCTGGGCC < 41bp 1 0.0953749123812944 1 0.106821596622467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCKDK ENSG00000103507 CDS Human protein_coding chr16:31121439 chr16:31121421 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_15126 0 0 1 2 2 BCKDK chr16:31121445 5'GT 31121445 Upstream 25bp
chr8 22064484 22064484 1 + G T ACC 22064464 + 22064444 22064484 41 AAGGAGTGCACGTGGGCCATCTCCAGCACCCCCGGGCACCG AAGGAGTGCACGTGGGCCATCTCCAGCACCCCCGGGCACCT < 41bp 1 0.687012065110091 1 0.872571110725403 experiment 0.625975869779819 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22064464 chr8:22064484 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_15127 0 0 0 0 1 BMP1 chr8:22064494 5'GT 22064494 Upstream 11bp
chr2 223782837 223782837 1 + C T ACC 223782831 + 223782811 223782851 41 TTAAATGAAACAGAGGTGACCAACATCATTACTAGTAAAGA TTAAATGAAACAGAGGTGACCAACATTATTACTAGTAAAGA < 41bp 1 0.551355296312331 1 0.213681608438492 experiment 0.897289407375338 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACSL3 ENSG00000123983 CDS Human protein_coding chr2:223782831 chr2:223782837 synonymous SNV . 0 27 hm5C_associated_SNPs_15128 0 0 1 0 2 ACSL3 chr2:223782764 3'AG 223782764 Downstream 74bp
chr2 223782837 223782837 1 + C T ACC 223782831 + 223782811 223782851 41 TTAAATGAAACAGAGGTGACCAACATCATTACTAGTAAAGA TTAAATGAAACAGAGGTGACCAACATTATTACTAGTAAAGA < 41bp 1 0.551355296312331 1 0.213681608438492 experiment 0.897289407375338 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACSL3 ENSG00000123983 CDS Human protein_coding chr2:223782831 chr2:223782837 synonymous SNV . 0 27 hm5C_associated_SNPs_15128 0 0 1 0 2 ACSL3 chr2:223782873 5'GT 223782873 Upstream 37bp
chr19 11472132 11472132 1 + G T ACC 11472113 + 11472093 11472133 41 GTGGCCGCCGCGCGCCGCGCCTTCCCCTGCAAGGATGCGGC GTGGCCGCCGCGCGCCGCGCCTTCCCCTGCAAGGATGCGTC < 41bp 1 0.136406245125807 1 0.342728018760681 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11472113 chr19:11472132 nonsynonymous SNV 0.989 1 40 hm5C_associated_SNPs_15129 0 0 1 0 1 PLPPR2 chr19:11472164 5'GT 11472164 Upstream 33bp
chr17 79080645 79080645 1 + G A ACC 79080643 + 79080623 79080663 41 CGCCGCCTCCCGGGCCTTCCCCGCCCAGACGGCCAGCGGCT CGCCGCCTCCCGGGCCTTCCCCACCCAGACGGCCAGCGGCT < 41bp 1 0.298467449402257 1 0.0911566019058228 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080643 chr17:79080645 nonsynonymous SNV 0.383 0 23 hm5C_associated_SNPs_15130 0 0 1 0 1 BAIAP2 chr17:79080707 5'GT 79080707 Upstream 63bp
chr17 79080645 79080645 1 + G A ACC 79080644 + 79080624 79080664 41 GCCGCCTCCCGGGCCTTCCCCGCCCAGACGGCCAGCGGCTT GCCGCCTCCCGGGCCTTCCCCACCCAGACGGCCAGCGGCTT < 41bp 1 0.5202581171652 1 0.0676816999912262 experiment 0.9594837656696 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080644 chr17:79080645 nonsynonymous SNV 0.383 0 22 hm5C_associated_SNPs_15131 0 0 1 0 1 BAIAP2 chr17:79080707 5'GT 79080707 Upstream 63bp
chr3 58128391 58128391 1 + C G ACC 58128382 + 58128362 58128402 41 GCCTTCTGTTTTTAGGTGACCGAAGAGGCCTATGTCCCAGT GCCTTCTGTTTTTAGGTGACCGAAGAGGCGTATGTCCCAGT < 41bp 1 0.156497554309558 1 0.843326210975647 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58128382 chr3:58128391 synonymous SNV . 0 30 hm5C_associated_SNPs_15136 0 0 1 0 2 FLNB chr3:58128377 3'AG 58128377 Downstream 15bp
chr3 58128391 58128391 1 + C G ACC 58128382 + 58128362 58128402 41 GCCTTCTGTTTTTAGGTGACCGAAGAGGCCTATGTCCCAGT GCCTTCTGTTTTTAGGTGACCGAAGAGGCGTATGTCCCAGT < 41bp 1 0.156497554309558 1 0.843326210975647 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58128382 chr3:58128391 synonymous SNV . 0 30 hm5C_associated_SNPs_15136 0 0 1 0 2 FLNB chr3:58128479 5'GT 58128479 Upstream 89bp
chr2 70096886 70096886 1 + C T ACC 70096880 + 70096860 70096900 41 CGTTGGACAGGTTTTAACTTCGGCTTCGACCTACTTGTAAC CGTTGGACAGGTTTTAACTTCGGCTTTGACCTACTTGTAAC < 41bp 1 0.641206149005761 1 0.290747761726379 experiment 0.717587701988478 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GMCL1 ENSG00000087338 CDS Human protein_coding chr2:70096880 chr2:70096886 synonymous SNV . 0 27 hm5C_associated_SNPs_15137 0 0 1 0 1 GMCL1 chr2:70096851 3'AG 70096851 Downstream 36bp
chr19 45260388 45260388 1 + G A ACC 45260397 + 45260377 45260417 41 CCGCTCACCTGGCGTGCGAGCACCGCAGCCCGACCTGCCTG CCGCTCACCTGACGTGCGAGCACCGCAGCCCGACCTGCCTG < 41bp 1 0.625591976132086 1 0.361227929592133 experiment 0.748816047735828 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCL3 ENSG00000069399 CDS Human protein_coding chr19:45260397 chr19:45260388 nonsynonymous SNV 0.984 5 12 hm5C_associated_SNPs_15140 0 0 0 0 1 BCL3 chr19:45260478 5'GT 45260478 Upstream 91bp
chr6 80406276 80406276 1 + A G ACC 80406278 + 80406258 80406298 41 CCTGAAACCACGGTTGGCATCAAAGGTAGGTAAATCTTTTC CCTGAAACCACGGTTGGCGTCAAAGGTAGGTAAATCTTTTC < 41bp 1 0.539749371826415 1 0.733031272888184 experiment 0.92050125634717 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SH3BGRL2 ENSG00000198478 CDS Human protein_coding chr6:80406278 chr6:80406276 synonymous SNV . 0 19 hm5C_associated_SNPs_15141 0 0 1 0 2 SH3BGRL2 chr6:80406202 3'AG 80406202 Downstream 75bp
chr6 80406276 80406276 1 + A G ACC 80406278 + 80406258 80406298 41 CCTGAAACCACGGTTGGCATCAAAGGTAGGTAAATCTTTTC CCTGAAACCACGGTTGGCGTCAAAGGTAGGTAAATCTTTTC < 41bp 1 0.539749371826415 1 0.733031272888184 experiment 0.92050125634717 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SH3BGRL2 ENSG00000198478 CDS Human protein_coding chr6:80406278 chr6:80406276 synonymous SNV . 0 19 hm5C_associated_SNPs_15141 0 0 1 0 2 SH3BGRL2 chr6:80406282 5'GT 80406282 Upstream 7bp
chr11 118495742 118495742 1 + C T ACC 118495741 + 118495721 118495761 41 AGCATGATTCCAGCAGGGGGCCGAGCCCCTGGGCCCCCCTA AGCATGATTCCAGCAGGGGGCTGAGCCCCTGGGCCCCCCTA < 41bp 1 0.487272550153561 1 0.394261062145233 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495741 chr11:118495742 stopgain 0.995 0 22 hm5C_associated_SNPs_15143 0 0 0 0 2 PHLDB1 chr11:118495650 3'AG 118495650 Downstream 93bp
chr11 118495742 118495742 1 + C T ACC 118495741 + 118495721 118495761 41 AGCATGATTCCAGCAGGGGGCCGAGCCCCTGGGCCCCCCTA AGCATGATTCCAGCAGGGGGCTGAGCCCCTGGGCCCCCCTA < 41bp 1 0.487272550153561 1 0.394261062145233 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495741 chr11:118495742 stopgain 0.995 0 22 hm5C_associated_SNPs_15143 0 0 0 0 2 PHLDB1 chr11:118495775 5'GT 118495775 Upstream 34bp
chr11 118495742 118495742 1 + C T ACC 118495754 + 118495734 118495774 41 CAGGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCT CAGGGGGCTGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCT < 41bp 1 0.090736715747838 1 0.0360175967216492 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495754 chr11:118495742 stopgain 0.995 0 9 hm5C_associated_SNPs_15144 0 0 0 0 2 PHLDB1 chr11:118495650 3'AG 118495650 Downstream 93bp
chr11 118495742 118495742 1 + C T ACC 118495754 + 118495734 118495774 41 CAGGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCT CAGGGGGCTGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCT < 41bp 1 0.090736715747838 1 0.0360175967216492 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495754 chr11:118495742 stopgain 0.995 0 9 hm5C_associated_SNPs_15144 0 0 0 0 2 PHLDB1 chr11:118495775 5'GT 118495775 Upstream 34bp
chr11 118495742 118495742 1 + C T ACC 118495755 + 118495735 118495775 41 AGGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTG AGGGGGCTGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTG < 41bp 1 0.135989790272771 1 0.0320621728897095 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495755 chr11:118495742 stopgain 0.995 0 8 hm5C_associated_SNPs_15145 0 0 0 0 2 PHLDB1 chr11:118495650 3'AG 118495650 Downstream 93bp
chr11 118495742 118495742 1 + C T ACC 118495755 + 118495735 118495775 41 AGGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTG AGGGGGCTGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTG < 41bp 1 0.135989790272771 1 0.0320621728897095 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495755 chr11:118495742 stopgain 0.995 0 8 hm5C_associated_SNPs_15145 0 0 0 0 2 PHLDB1 chr11:118495775 5'GT 118495775 Upstream 34bp
chr11 118495742 118495742 1 + C T ACC 118495756 + 118495736 118495776 41 GGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGG GGGGGCTGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGG < 41bp 1 0.184619353999402 1 0.0546457171440125 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495756 chr11:118495742 stopgain 0.995 0 7 hm5C_associated_SNPs_15146 0 0 0 0 2 PHLDB1 chr11:118495650 3'AG 118495650 Downstream 93bp
chr11 118495742 118495742 1 + C T ACC 118495756 + 118495736 118495776 41 GGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGG GGGGGCTGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGG < 41bp 1 0.184619353999402 1 0.0546457171440125 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495756 chr11:118495742 stopgain 0.995 0 7 hm5C_associated_SNPs_15146 0 0 0 0 2 PHLDB1 chr11:118495775 5'GT 118495775 Upstream 34bp
chr11 118495742 118495742 1 + C T ACC 118495757 + 118495737 118495777 41 GGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGGT GGGGCTGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGGT < 41bp 1 0.248830682691981 1 0.0627687871456146 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495757 chr11:118495742 stopgain 0.995 0 6 hm5C_associated_SNPs_15147 0 0 0 0 2 PHLDB1 chr11:118495650 3'AG 118495650 Downstream 93bp
chr11 118495742 118495742 1 + C T ACC 118495757 + 118495737 118495777 41 GGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGGT GGGGCTGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGGT < 41bp 1 0.248830682691981 1 0.0627687871456146 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495757 chr11:118495742 stopgain 0.995 0 6 hm5C_associated_SNPs_15147 0 0 0 0 2 PHLDB1 chr11:118495775 5'GT 118495775 Upstream 34bp
chr11 118495742 118495742 1 + C T ACC 118495758 + 118495738 118495778 41 GGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGGTA GGGCTGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGGTA < 41bp 1 0.0565258444052234 1 0.323922127485275 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495758 chr11:118495742 stopgain 0.995 0 5 hm5C_associated_SNPs_15148 0 0 0 0 2 PHLDB1 chr11:118495650 3'AG 118495650 Downstream 93bp
chr11 118495742 118495742 1 + C T ACC 118495758 + 118495738 118495778 41 GGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGGTA GGGCTGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGGTA < 41bp 1 0.0565258444052234 1 0.323922127485275 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495758 chr11:118495742 stopgain 0.995 0 5 hm5C_associated_SNPs_15148 0 0 0 0 2 PHLDB1 chr11:118495775 5'GT 118495775 Upstream 34bp
chr21 46900432 46900432 1 + C T ACC 46900416 + 46900396 46900436 41 GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTGCGGGT GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTGTGGGT < 41bp 1 0.0322796783188585 1 0.169211447238922 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900416 chr21:46900432 nonsynonymous SNV 0.161 3 37 hm5C_associated_SNPs_15149 0 0 1 0 2 COL18A1 chr21:46900381 3'AG 46900381 Downstream 52bp
chr21 46900432 46900432 1 + C T ACC 46900416 + 46900396 46900436 41 GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTGCGGGT GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTGTGGGT < 41bp 1 0.0322796783188585 1 0.169211447238922 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900416 chr21:46900432 nonsynonymous SNV 0.161 3 37 hm5C_associated_SNPs_15149 0 0 1 0 2 COL18A1 chr21:46900434 5'GT 46900434 Upstream 3bp
chr12 123465730 123465730 1 + G T ACC 123465748 + 123465728 123465768 41 CCGGTCCCGGGGACGGGGGTCGGAAAAGAGAAAGAAGAAGA CCTGTCCCGGGGACGGGGGTCGGAAAAGAGAAAGAAGAAGA < 41bp 1 0.736946876150315 1 0.742080450057983 experiment 0.52610624769937 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ARL6IP4 ENSG00000182196 CDS Human protein_coding chr12:123465748 chr12:123465730 nonsynonymous SNV 0.999 2 3 hm5C_associated_SNPs_15151 0 0 1 0 1 ARL6IP4 chr12:123465813 5'GT 123465813 Upstream 84bp
chr5 149758877 149758877 1 + C G ACC 149758892 + 149758872 149758912 41 CGTGGCTACAGCAGCTCAGGCCCAGACAGGGCCAGAGGAGG CGTGGGTACAGCAGCTCAGGCCCAGACAGGGCCAGAGGAGG < 41bp 1 0.0956980733823551 1 0.116784632205963 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149758892 chr5:149758877 nonsynonymous SNV 0.009 2 6 hm5C_associated_SNPs_15152 0 0 1 0 2 TCOF1 chr5:149758792 3'AG 149758792 Downstream 86bp
chr5 149758877 149758877 1 + C G ACC 149758892 + 149758872 149758912 41 CGTGGCTACAGCAGCTCAGGCCCAGACAGGGCCAGAGGAGG CGTGGGTACAGCAGCTCAGGCCCAGACAGGGCCAGAGGAGG < 41bp 1 0.0956980733823551 1 0.116784632205963 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149758892 chr5:149758877 nonsynonymous SNV 0.009 2 6 hm5C_associated_SNPs_15152 0 0 1 0 2 TCOF1 chr5:149758971 5'GT 149758971 Upstream 95bp
chr5 149758877 149758877 1 + C G ACC 149758893 + 149758873 149758913 41 GTGGCTACAGCAGCTCAGGCCCAGACAGGGCCAGAGGAGGA GTGGGTACAGCAGCTCAGGCCCAGACAGGGCCAGAGGAGGA < 41bp 1 0.242685768113834 1 0.262529462575912 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149758893 chr5:149758877 nonsynonymous SNV 0.009 2 5 hm5C_associated_SNPs_15153 0 0 1 0 2 TCOF1 chr5:149758792 3'AG 149758792 Downstream 86bp
chr5 149758877 149758877 1 + C G ACC 149758893 + 149758873 149758913 41 GTGGCTACAGCAGCTCAGGCCCAGACAGGGCCAGAGGAGGA GTGGGTACAGCAGCTCAGGCCCAGACAGGGCCAGAGGAGGA < 41bp 1 0.242685768113834 1 0.262529462575912 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149758893 chr5:149758877 nonsynonymous SNV 0.009 2 5 hm5C_associated_SNPs_15153 0 0 1 0 2 TCOF1 chr5:149758971 5'GT 149758971 Upstream 95bp
chr5 149758877 149758877 1 + C G ACC 149758894 + 149758874 149758914 41 TGGCTACAGCAGCTCAGGCCCAGACAGGGCCAGAGGAGGAC TGGGTACAGCAGCTCAGGCCCAGACAGGGCCAGAGGAGGAC < 41bp 1 0.133270351299319 1 0.188710004091263 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149758894 chr5:149758877 nonsynonymous SNV 0.009 2 4 hm5C_associated_SNPs_15154 0 0 1 0 2 TCOF1 chr5:149758792 3'AG 149758792 Downstream 86bp
chr5 149758877 149758877 1 + C G ACC 149758894 + 149758874 149758914 41 TGGCTACAGCAGCTCAGGCCCAGACAGGGCCAGAGGAGGAC TGGGTACAGCAGCTCAGGCCCAGACAGGGCCAGAGGAGGAC < 41bp 1 0.133270351299319 1 0.188710004091263 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149758894 chr5:149758877 nonsynonymous SNV 0.009 2 4 hm5C_associated_SNPs_15154 0 0 1 0 2 TCOF1 chr5:149758971 5'GT 149758971 Upstream 95bp
chr13 113719264 113719264 1 + C T ACC 113719251 + 113719231 113719271 41 TGTTTTCTCTGTCCCCAAGGCCATCGAAAGTTTCGCCCTCA TGTTTTCTCTGTCCCCAAGGCCATCGAAAGTTTTGCCCTCA < 41bp 1 0.018822011975924 1 0.184009969234467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113719251 chr13:113719264 synonymous SNV . 0 34 hm5C_associated_SNPs_15156 0 0 0 0 1 MCF2L chr13:113719250 3'AG 113719250 Downstream 15bp
chr19 41758838 41758838 1 + T C ACC 41758850 + 41758830 41758870 41 ACACAGCTTCCTCCTCTATTCCCGGCTCGGGGACCAGCCAG ACACAGCTCCCTCCTCTATTCCCGGCTCGGGGACCAGCCAG < 41bp 1 0.60935109854068 1 0.23870462179184 experiment 0.781297802918639 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AXL ENSG00000167601 CDS Human protein_coding chr19:41758850 chr19:41758838 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_15157 0 0 1 0 2 AXL chr19:41758751 3'AG 41758751 Downstream 88bp
chr19 41758838 41758838 1 + T C ACC 41758850 + 41758830 41758870 41 ACACAGCTTCCTCCTCTATTCCCGGCTCGGGGACCAGCCAG ACACAGCTCCCTCCTCTATTCCCGGCTCGGGGACCAGCCAG < 41bp 1 0.60935109854068 1 0.23870462179184 experiment 0.781297802918639 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AXL ENSG00000167601 CDS Human protein_coding chr19:41758850 chr19:41758838 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_15157 0 0 1 0 2 AXL chr19:41758872 5'GT 41758872 Upstream 35bp
chr19 41758838 41758838 1 + T C ACC 41758851 + 41758831 41758871 41 CACAGCTTCCTCCTCTATTCCCGGCTCGGGGACCAGCCAGT CACAGCTCCCTCCTCTATTCCCGGCTCGGGGACCAGCCAGT < 41bp 1 0.164861476037545 1 0.135707557201385 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 CDS Human protein_coding chr19:41758851 chr19:41758838 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_15158 0 0 1 0 2 AXL chr19:41758751 3'AG 41758751 Downstream 88bp
chr19 41758838 41758838 1 + T C ACC 41758851 + 41758831 41758871 41 CACAGCTTCCTCCTCTATTCCCGGCTCGGGGACCAGCCAGT CACAGCTCCCTCCTCTATTCCCGGCTCGGGGACCAGCCAGT < 41bp 1 0.164861476037545 1 0.135707557201385 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 CDS Human protein_coding chr19:41758851 chr19:41758838 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_15158 0 0 1 0 2 AXL chr19:41758872 5'GT 41758872 Upstream 35bp
chr12 57560791 57560791 1 + A G ACC 57560805 + 57560785 57560825 41 TGGATGACGACTGTGGGGACCGCTCTGATGAGTCTGCTTCG TGGATGGCGACTGTGGGGACCGCTCTGATGAGTCTGCTTCG < 41bp 1 0.0529728109430925 1 0.214202344417572 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57560805 chr12:57560791 nonsynonymous SNV 0.969 4 7 hm5C_associated_SNPs_15159 0 0 1 0 2 LRP1 chr12:57560713 3'AG 57560713 Downstream 79bp
chr12 57560791 57560791 1 + A G ACC 57560805 + 57560785 57560825 41 TGGATGACGACTGTGGGGACCGCTCTGATGAGTCTGCTTCG TGGATGGCGACTGTGGGGACCGCTCTGATGAGTCTGCTTCG < 41bp 1 0.0529728109430925 1 0.214202344417572 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57560805 chr12:57560791 nonsynonymous SNV 0.969 4 7 hm5C_associated_SNPs_15159 0 0 1 0 2 LRP1 chr12:57560829 5'GT 57560829 Upstream 39bp
chr1 154962713 154962713 1 + T A ACC 154962708 + 154962688 154962728 41 CCCCTTTCCCTGAGCTGGAACAGTTTCTACAGGACACTATC CCCCTTTCCCTGAGCTGGAACAGTTACTACAGGACACTATC < 41bp 1 0.234786025711314 1 0.257856547832489 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962708 chr1:154962713 nonsynonymous SNV 0.990 4 26 hm5C_associated_SNPs_15160 0 0 1 0 2 FLAD1 chr1:154962635 3'AG 154962635 Downstream 79bp
chr1 154962713 154962713 1 + T A ACC 154962708 + 154962688 154962728 41 CCCCTTTCCCTGAGCTGGAACAGTTTCTACAGGACACTATC CCCCTTTCCCTGAGCTGGAACAGTTACTACAGGACACTATC < 41bp 1 0.234786025711314 1 0.257856547832489 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962708 chr1:154962713 nonsynonymous SNV 0.990 4 26 hm5C_associated_SNPs_15160 0 0 1 0 2 FLAD1 chr1:154962733 5'GT 154962733 Upstream 21bp
chr1 63282309 63282309 1 + A T ACC 63282293 + 63282273 63282313 41 CGGGATGTACAATAGAGGATCACGTAATTGCAGGAAATGTA CGGGATGTACAATAGAGGATCACGTAATTGCAGGAATTGTA < 41bp 1 0.441340967800949 1 0.141036182641983 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATG4C ENSG00000125703 CDS Human protein_coding chr1:63282293 chr1:63282309 nonsynonymous SNV 0.999 1 37 hm5C_associated_SNPs_15162 0 0 1 0 1 ATG4C chr1:63282246 3'AG 63282246 Downstream 64bp
chr1 1959038 1959038 1 + G A ACC 1959037 + 1959017 1959057 41 ATCACCTCCACTGTGGCCTGCGACATGGACCTGGCCAAATA ATCACCTCCACTGTGGCCTGCAACATGGACCTGGCCAAATA < 41bp 1 0.497202466542298 1 0.186063885688782 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GABRD ENSG00000187730 CDS Human protein_coding chr1:1959037 chr1:1959038 nonsynonymous SNV 0.984 3 22 hm5C_associated_SNPs_15167 0 0 0 0 2 GABRD chr1:1959016 3'AG 1959016 Downstream 23bp
chr1 1959038 1959038 1 + G A ACC 1959037 + 1959017 1959057 41 ATCACCTCCACTGTGGCCTGCGACATGGACCTGGCCAAATA ATCACCTCCACTGTGGCCTGCAACATGGACCTGGCCAAATA < 41bp 1 0.497202466542298 1 0.186063885688782 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GABRD ENSG00000187730 CDS Human protein_coding chr1:1959037 chr1:1959038 nonsynonymous SNV 0.984 3 22 hm5C_associated_SNPs_15167 0 0 0 0 2 GABRD chr1:1959098 5'GT 1959098 Upstream 61bp
chr16 1793368 1793368 1 + C A ACC 1793369 + 1793349 1793389 41 ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACG ACCTCCCTGAACGTGTTCCACCTGGCTGACGGCACGGTACG < 41bp 1 0.176553905713457 1 0.0508491098880768 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1793369 chr16:1793368 nonsynonymous SNV 0.689 2 20 hm5C_associated_SNPs_15168 0 0 1 0 2 MAPK8IP3 chr16:1793333 3'AG 1793333 Downstream 36bp
chr16 1793368 1793368 1 + C A ACC 1793369 + 1793349 1793389 41 ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACG ACCTCCCTGAACGTGTTCCACCTGGCTGACGGCACGGTACG < 41bp 1 0.176553905713457 1 0.0508491098880768 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1793369 chr16:1793368 nonsynonymous SNV 0.689 2 20 hm5C_associated_SNPs_15168 0 0 1 0 2 MAPK8IP3 chr16:1793336 3'AG 1793336 Downstream 33bp
chr17 30535210 30535210 1 + T C ACC 30535224 + 30535204 30535244 41 AGTATTTCACCTACTGATTTCTGCAGGAAACACAAAATGCC AGTATTCCACCTACTGATTTCTGCAGGAAACACAAAATGCC < 41bp 1 0.759685936765197 1 0.762610197067261 experiment 0.480628126469606 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHOT1 ENSG00000126858 CDS Human protein_coding chr17:30535224 chr17:30535210 nonsynonymous SNV 0.993 0 7 hm5C_associated_SNPs_15169 0 0 1 3 1 RHOT1 chr17:30535126 3'AG 30535126 Downstream 85bp
chr1 161173239 161173239 1 + G T ACC 161173246 + 161173226 161173266 41 GAGGTGTTCGGCAGTGGCAGCCAGATGTGGAATGGGCACAG GAGGTGTTCGGCATTGGCAGCCAGATGTGGAATGGGCACAG < 41bp 1 0.649166509553446 1 0.67762553691864 experiment 0.701666980893109 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161173246 chr1:161173239 nonsynonymous SNV 0.997 2 14 hm5C_associated_SNPs_15170 0 0 1 0 2 NDUFS2 chr1:161173193 3'AG 161173193 Downstream 47bp
chr1 161173239 161173239 1 + G T ACC 161173246 + 161173226 161173266 41 GAGGTGTTCGGCAGTGGCAGCCAGATGTGGAATGGGCACAG GAGGTGTTCGGCATTGGCAGCCAGATGTGGAATGGGCACAG < 41bp 1 0.649166509553446 1 0.67762553691864 experiment 0.701666980893109 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161173246 chr1:161173239 nonsynonymous SNV 0.997 2 14 hm5C_associated_SNPs_15170 0 0 1 0 2 NDUFS2 chr1:161173333 5'GT 161173333 Upstream 95bp
chr14 102476260 102476260 1 + C T ACC 102476275 + 102476255 102476295 41 TGAACCCTGGCTACGCGGGCCGGTCTAACCTTCCTGACAAC TGAACTCTGGCTACGCGGGCCGGTCTAACCTTCCTGACAAC < 41bp 1 0.0449494962358117 1 0.345853865146637 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102476275 chr14:102476260 nonsynonymous SNV 0.999 4 6 hm5C_associated_SNPs_15171 0 0 1 0 1 DYNC1H1 chr14:102476180 3'AG 102476180 Downstream 81bp
chr16 2564109 2564109 1 + C G ACC 2564089 + 2564069 2564109 41 CGGCCCGCAGAGCTTGCCCCCTCCCCACCCGCAGACATGTC CGGCCCGCAGAGCTTGCCCCCTCCCCACCCGCAGACATGTG < 41bp 1 0.367794190126551 1 0.296096742153168 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP6V0C ENSG00000185883;ENSG00000259784 CDS Human other chr16:2564089 chr16:2564109 nonsynonymous SNV 0.234 0 41 hm5C_associated_SNPs_15173 0 0 1 0 2 ATP6V0C chr16:2564081 3'AG 2564081 Downstream 29bp
chr16 2564109 2564109 1 + C G ACC 2564089 + 2564069 2564109 41 CGGCCCGCAGAGCTTGCCCCCTCCCCACCCGCAGACATGTC CGGCCCGCAGAGCTTGCCCCCTCCCCACCCGCAGACATGTG < 41bp 1 0.367794190126551 1 0.296096742153168 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP6V0C ENSG00000185883;ENSG00000259784 CDS Human other chr16:2564089 chr16:2564109 nonsynonymous SNV 0.234 0 41 hm5C_associated_SNPs_15173 0 0 1 0 2 ATP6V0C chr16:2564183 5'GT 2564183 Upstream 75bp
chr12 112590550 112590550 1 + C G ACC 112590564 + 112590544 112590584 41 GCCTTCCAAGCAACAGGGAGCTGGGGATGCAGAAGAGGAAG GCCTTCGAAGCAACAGGGAGCTGGGGATGCAGAAGAGGAAG < 41bp 1 0.702721238924643 1 0.468556582927704 experiment 0.594557522150714 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112590564 chr12:112590550 synonymous SNV . 0 7 hm5C_associated_SNPs_15174 0 0 1 0 1 TRAFD1 chr12:112590539 3'AG 112590539 Downstream 12bp
chr5 912038 912038 1 + A G ACC 912029 + 912009 912049 41 CGTGGCCTTCGTGGACAGGGCTGACATCAAGCAGTACATTG CGTGGCCTTCGTGGACAGGGCTGACATCAGGCAGTACATTG < 41bp 1 0.362727003015796 1 0.0315431952476501 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:912029 chr5:912038 nonsynonymous SNV 0.986 1 30 hm5C_associated_SNPs_15179 0 0 1 0 2 TRIP13 chr5:911958 3'AG 911958 Downstream 81bp
chr5 912038 912038 1 + A G ACC 912029 + 912009 912049 41 CGTGGCCTTCGTGGACAGGGCTGACATCAAGCAGTACATTG CGTGGCCTTCGTGGACAGGGCTGACATCAGGCAGTACATTG < 41bp 1 0.362727003015796 1 0.0315431952476501 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:912029 chr5:912038 nonsynonymous SNV 0.986 1 30 hm5C_associated_SNPs_15179 0 0 1 0 2 TRIP13 chr5:912111 5'GT 912111 Upstream 74bp
chr3 33877676 33877676 1 + C T ACC 33877665 + 33877645 33877685 41 ATGACTTCATTTATCATGATCGAGTTCCAGACCTTAAAGAT ATGACTTCATTTATCATGATCGAGTTCCAGATCTTAAAGAT < 41bp 1 0.471121473263363 1 0.246382355690002 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33877665 chr3:33877676 synonymous SNV . 0 32 hm5C_associated_SNPs_15180 0 0 1 0 1 PDCD6IP chr3:33877758 5'GT 33877758 Upstream 83bp
chr6 159086557 159086557 1 + C T ACC 159086565 + 159086545 159086585 41 GGCGCCGTGTGCCGGGGCTGCAGCCACCGCGTGTGTGCCCA GGCGCCGTGTGCTGGGGCTGCAGCCACCGCGTGTGTGCCCA < 41bp 1 0.610020321754203 1 0.587042987346649 experiment 0.779959356491593 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159086565 chr6:159086557 nonsynonymous SNV 0.945 2 13 hm5C_associated_SNPs_15181 0 0 0 0 1 SYTL3 chr6:159086645 5'GT 159086645 Upstream 89bp
chr2 36739479 36739479 1 + G T ACC 36739473 + 36739453 36739493 41 AAATGTCCAGAGCTCTCATGCAGTAAGATCTGCCCCTTGGG AAATGTCCAGAGCTCTCATGCAGTAATATCTGCCCCTTGGG < 41bp 1 0.495100118808948 1 0.325673162937164 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36739473 chr2:36739479 nonsynonymous SNV 0.992 4 27 hm5C_associated_SNPs_15184 0 0 1 0 2 CRIM1 chr2:36739416 3'AG 36739416 Downstream 64bp
chr2 36739479 36739479 1 + G T ACC 36739473 + 36739453 36739493 41 AAATGTCCAGAGCTCTCATGCAGTAAGATCTGCCCCTTGGG AAATGTCCAGAGCTCTCATGCAGTAATATCTGCCCCTTGGG < 41bp 1 0.495100118808948 1 0.325673162937164 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36739473 chr2:36739479 nonsynonymous SNV 0.992 4 27 hm5C_associated_SNPs_15184 0 0 1 0 2 CRIM1 chr2:36739537 5'GT 36739537 Upstream 59bp
chr3 37336491 37336491 1 + G T ACC 37336473 + 37336453 37336493 41 ATCATTTTATGTTTTAGGAGCTCCAAATGGACCAGCAGGCA ATCATTTTATGTTTTAGGAGCTCCAAATGGACCAGCAGTCA < 41bp 1 0.310467204434672 1 0.525657773017883 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37336473 chr3:37336491 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_15185 0 0 1 0 2 GOLGA4 chr3:37336470 3'AG 37336470 Downstream 22bp
chr3 37336491 37336491 1 + G T ACC 37336473 + 37336453 37336493 41 ATCATTTTATGTTTTAGGAGCTCCAAATGGACCAGCAGGCA ATCATTTTATGTTTTAGGAGCTCCAAATGGACCAGCAGTCA < 41bp 1 0.310467204434672 1 0.525657773017883 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37336473 chr3:37336491 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_15185 0 0 1 0 2 GOLGA4 chr3:37336568 5'GT 37336568 Upstream 78bp
chr7 40085455 40085455 1 + G A ACC 40085473 + 40085453 40085493 41 TTGAATATATGGACCATGATCTGATGGGACTACTGGAATCA TTAAATATATGGACCATGATCTGATGGGACTACTGGAATCA < 41bp 1 0.246715493040797 1 0.114367127418518 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDK13 ENSG00000065883 CDS Human protein_coding chr7:40085473 chr7:40085455 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_15186 0 0 1 0 1 CDK13 chr7:40085435 3'AG 40085435 Downstream 21bp
chr12 6639952 6639952 1 + G A ACC 6639957 + 6639937 6639977 41 CCAAGCAGGTAGCCAGAGAGCGCCATCAGCCAAGAAACCAT CCAAGCAGGTAGCCAAAGAGCGCCATCAGCCAAGAAACCAT < 41bp 1 0.773765895054113 1 0.335585355758667 experiment 0.452468209891774 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6639957 chr12:6639952 synonymous SNV . 0 16 hm5C_associated_SNPs_15187 0 0 1 0 2 NCAPD2 chr12:6639857 3'AG 6639857 Downstream 96bp
chr12 6639952 6639952 1 + G A ACC 6639957 + 6639937 6639977 41 CCAAGCAGGTAGCCAGAGAGCGCCATCAGCCAAGAAACCAT CCAAGCAGGTAGCCAAAGAGCGCCATCAGCCAAGAAACCAT < 41bp 1 0.773765895054113 1 0.335585355758667 experiment 0.452468209891774 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6639957 chr12:6639952 synonymous SNV . 0 16 hm5C_associated_SNPs_15187 0 0 1 0 2 NCAPD2 chr12:6639983 5'GT 6639983 Upstream 32bp
chr7 150771214 150771214 1 + G C ACC 150771233 + 150771213 150771253 41 AGACCCACGCTGGGGCCGGGCAACAGGAGCTTGGCTGGGCA ACACCCACGCTGGGGCCGGGCAACAGGAGCTTGGCTGGGCA < 41bp 1 0.646131003798431 1 0.503123164176941 experiment 0.707737992403138 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150771233 chr7:150771214 nonsynonymous SNV 0.001 0 2 hm5C_associated_SNPs_15188 0 0 1 0 1 SLC4A2 chr7:150771126 3'AG 150771126 Downstream 89bp
chr12 57559628 57559628 1 + C T ACC 57559624 + 57559604 57559644 41 GCCTCCACCCCAGTGCCAGCCAGGCGAGTTTGCCTGTGCCA GCCTCCACCCCAGTGCCAGCCAGGTGAGTTTGCCTGTGCCA < 41bp 1 0.220262525249799 1 0.912267208099365 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57559624 chr12:57559628 synonymous SNV . 0 25 hm5C_associated_SNPs_15192 0 0 1 0 1 LRP1 chr12:57559588 3'AG 57559588 Downstream 41bp
chr10 118318731 118318731 1 + T G ACC 118318713 + 118318693 118318733 41 GGCTGCCCACAGATGGGTCACTATGCTGATAGATATCCTGG GGCTGCCCACAGATGGGTCACTATGCTGATAGATATCCGGG < 41bp 1 0.309821431423837 1 0.0955508947372437 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318713 chr10:118318731 synonymous SNV . 0 39 hm5C_associated_SNPs_15193 0 0 0 0 2 PNLIP chr10:118318666 3'AG 118318666 Downstream 66bp
chr10 118318731 118318731 1 + T G ACC 118318713 + 118318693 118318733 41 GGCTGCCCACAGATGGGTCACTATGCTGATAGATATCCTGG GGCTGCCCACAGATGGGTCACTATGCTGATAGATATCCGGG < 41bp 1 0.309821431423837 1 0.0955508947372437 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318713 chr10:118318731 synonymous SNV . 0 39 hm5C_associated_SNPs_15193 0 0 0 0 2 PNLIP chr10:118318795 5'GT 118318795 Upstream 65bp
chr10 118318731 118318731 1 + T G ACC 118318718 + 118318698 118318738 41 CCCACAGATGGGTCACTATGCTGATAGATATCCTGGGAAAA CCCACAGATGGGTCACTATGCTGATAGATATCCGGGGAAAA < 41bp 1 0.514935006070385 1 0.199554324150085 experiment 0.97012998785923 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318718 chr10:118318731 synonymous SNV . 0 34 hm5C_associated_SNPs_15194 0 0 0 0 2 PNLIP chr10:118318666 3'AG 118318666 Downstream 66bp
chr10 118318731 118318731 1 + T G ACC 118318718 + 118318698 118318738 41 CCCACAGATGGGTCACTATGCTGATAGATATCCTGGGAAAA CCCACAGATGGGTCACTATGCTGATAGATATCCGGGGAAAA < 41bp 1 0.514935006070385 1 0.199554324150085 experiment 0.97012998785923 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318718 chr10:118318731 synonymous SNV . 0 34 hm5C_associated_SNPs_15194 0 0 0 0 2 PNLIP chr10:118318795 5'GT 118318795 Upstream 65bp
chr10 45484790 45484790 1 + G A ACC 45484778 + 45484758 45484798 41 AATGTGAGGGTCAACAGCACCATGACAACCCTGCAGGTGCT AATGTGAGGGTCAACAGCACCATGACAACCCTACAGGTGCT < 41bp 1 0.553379701472796 1 0.479165613651276 experiment 0.893240597054409 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45484778 chr10:45484790 synonymous SNV . 0 33 hm5C_associated_SNPs_15196 0 0 1 0 1 RASSF4 chr10:45484722 3'AG 45484722 Downstream 69bp
chr9 130164929 130164929 1 + G A ACC 130164924 + 130164904 130164944 41 ATGTGCTTCATGCCCGAGACCCCGCGCTTCCTGCTGACTCA ATGTGCTTCATGCCCGAGACCCCGCACTTCCTGCTGACTCA < 41bp 1 0.223669218954456 1 0.0918110013008118 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A8 ENSG00000136856 CDS Human protein_coding chr9:130164924 chr9:130164929 nonsynonymous SNV 0.987 3 26 hm5C_associated_SNPs_15198 0 0 1 0 1 SLC2A8 chr9:130164836 3'AG 130164836 Downstream 94bp
chr9 138662903 138662903 1 + C T ACC 138662890 + 138662870 138662910 41 GGGCCTTCTCGGGGCAGGGGCTGCACGAGGGTCCGGCCCGC GGGCCTTCTCGGGGCAGGGGCTGCACGAGGGTCTGGCCCGC < 41bp 1 0.724563221845024 1 0.774870872497559 experiment 0.550873556309951 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control KCNT1 ENSG00000107147 CDS Human protein_coding chr9:138662890 chr9:138662903 nonsynonymous SNV 0.017 0 34 hm5C_associated_SNPs_15199 0 0 0 0 1 KCNT1 chr9:138662941 5'GT 138662941 Upstream 39bp
chr7 130021521 130021521 1 + A G ACC 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGGGT < 41bp 1 0.229907018271546 1 0.122661769390106 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021521 synonymous SNV . 0 39 hm5C_associated_SNPs_15200 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 51bp
chr7 130021521 130021521 1 + A G ACC 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGGGT < 41bp 1 0.229907018271546 1 0.122661769390106 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021521 synonymous SNV . 0 39 hm5C_associated_SNPs_15200 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 1bp
chr7 130021521 130021521 1 + A G ACC 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGGGTGC < 41bp 1 0.236426661514852 1 0.0332609117031097 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021521 synonymous SNV . 0 37 hm5C_associated_SNPs_15201 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 51bp
chr7 130021521 130021521 1 + A G ACC 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGGGTGC < 41bp 1 0.236426661514852 1 0.0332609117031097 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021521 synonymous SNV . 0 37 hm5C_associated_SNPs_15201 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 1bp
chr7 130021521 130021521 1 + A G ACC 130021506 + 130021486 130021526 41 GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGGGTGCC < 41bp 1 0.469246051423297 1 0.416269570589066 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021506 chr7:130021521 synonymous SNV . 0 36 hm5C_associated_SNPs_15202 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 51bp
chr7 130021521 130021521 1 + A G ACC 130021506 + 130021486 130021526 41 GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGGGTGCC < 41bp 1 0.469246051423297 1 0.416269570589066 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021506 chr7:130021521 synonymous SNV . 0 36 hm5C_associated_SNPs_15202 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 1bp
chr7 130021521 130021521 1 + A G ACC 130021507 + 130021487 130021527 41 GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGGGTGCCC < 41bp 1 0.11216530914391 1 0.0616657435894012 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021507 chr7:130021521 synonymous SNV . 0 35 hm5C_associated_SNPs_15203 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 51bp
chr7 130021521 130021521 1 + A G ACC 130021507 + 130021487 130021527 41 GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGGGTGCCC < 41bp 1 0.11216530914391 1 0.0616657435894012 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021507 chr7:130021521 synonymous SNV . 0 35 hm5C_associated_SNPs_15203 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 1bp
chr7 130021521 130021521 1 + A G ACC 130021508 + 130021488 130021528 41 GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGGGTGCCCT < 41bp 1 0.0619215374256849 1 0.462299406528473 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021508 chr7:130021521 synonymous SNV . 0 34 hm5C_associated_SNPs_15204 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 51bp
chr7 130021521 130021521 1 + A G ACC 130021508 + 130021488 130021528 41 GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGGGTGCCCT < 41bp 1 0.0619215374256849 1 0.462299406528473 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021508 chr7:130021521 synonymous SNV . 0 34 hm5C_associated_SNPs_15204 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 1bp
chr7 130021521 130021521 1 + A G ACC 130021509 + 130021489 130021529 41 CCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT CCTGCCCACCCTGGCTCCCCCATCGACGTCCGGGTGCCCTT < 41bp 1 0.415931668377243 1 0.206031054258347 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021509 chr7:130021521 synonymous SNV . 0 33 hm5C_associated_SNPs_15205 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 51bp
chr7 130021521 130021521 1 + A G ACC 130021509 + 130021489 130021529 41 CCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT CCTGCCCACCCTGGCTCCCCCATCGACGTCCGGGTGCCCTT < 41bp 1 0.415931668377243 1 0.206031054258347 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021509 chr7:130021521 synonymous SNV . 0 33 hm5C_associated_SNPs_15205 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 1bp
chr7 130021521 130021521 1 + A G ACC 130021515 + 130021495 130021535 41 CACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAG CACCCTGGCTCCCCCATCGACGTCCGGGTGCCCTTCCCCAG < 41bp 1 0.435953943151567 1 0.165007948875427 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021515 chr7:130021521 synonymous SNV . 0 27 hm5C_associated_SNPs_15206 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 51bp
chr7 130021521 130021521 1 + A G ACC 130021515 + 130021495 130021535 41 CACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAG CACCCTGGCTCCCCCATCGACGTCCGGGTGCCCTTCCCCAG < 41bp 1 0.435953943151567 1 0.165007948875427 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021515 chr7:130021521 synonymous SNV . 0 27 hm5C_associated_SNPs_15206 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 1bp
chr7 130021521 130021521 1 + A G ACC 130021518 + 130021498 130021538 41 CCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCAT CCTGGCTCCCCCATCGACGTCCGGGTGCCCTTCCCCAGCAT < 41bp 1 0.728559419461696 1 0.825528740882874 experiment 0.542881161076608 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021518 chr7:130021521 synonymous SNV . 0 24 hm5C_associated_SNPs_15207 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 51bp
chr7 130021521 130021521 1 + A G ACC 130021518 + 130021498 130021538 41 CCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCAT CCTGGCTCCCCCATCGACGTCCGGGTGCCCTTCCCCAGCAT < 41bp 1 0.728559419461696 1 0.825528740882874 experiment 0.542881161076608 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021518 chr7:130021521 synonymous SNV . 0 24 hm5C_associated_SNPs_15207 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 1bp
chr7 130021521 130021521 1 + A G ACC 130021519 + 130021499 130021539 41 CTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATC CTGGCTCCCCCATCGACGTCCGGGTGCCCTTCCCCAGCATC < 41bp 1 0.584644325975132 1 0.817875146865845 experiment 0.830711348049735 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021519 chr7:130021521 synonymous SNV . 0 23 hm5C_associated_SNPs_15208 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 51bp
chr7 130021521 130021521 1 + A G ACC 130021519 + 130021499 130021539 41 CTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATC CTGGCTCCCCCATCGACGTCCGGGTGCCCTTCCCCAGCATC < 41bp 1 0.584644325975132 1 0.817875146865845 experiment 0.830711348049735 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021519 chr7:130021521 synonymous SNV . 0 23 hm5C_associated_SNPs_15208 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 1bp
chr7 130021521 130021521 1 + A G ACC 130021525 + 130021505 130021545 41 CCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCG CCCCCATCGACGTCCGGGTGCCCTTCCCCAGCATCCAGGCG < 41bp 1 0.0585811544994315 1 0.0111385583877563 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021525 chr7:130021521 synonymous SNV . 0 17 hm5C_associated_SNPs_15209 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 51bp
chr7 130021521 130021521 1 + A G ACC 130021525 + 130021505 130021545 41 CCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCG CCCCCATCGACGTCCGGGTGCCCTTCCCCAGCATCCAGGCG < 41bp 1 0.0585811544994315 1 0.0111385583877563 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021525 chr7:130021521 synonymous SNV . 0 17 hm5C_associated_SNPs_15209 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 1bp
chr7 130021521 130021521 1 + A G ACC 130021526 + 130021506 130021546 41 CCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGG CCCCATCGACGTCCGGGTGCCCTTCCCCAGCATCCAGGCGG < 41bp 1 0.0286916401616915 1 0.0413260459899902 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021526 chr7:130021521 synonymous SNV . 0 16 hm5C_associated_SNPs_15210 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 51bp
chr7 130021521 130021521 1 + A G ACC 130021526 + 130021506 130021546 41 CCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGG CCCCATCGACGTCCGGGTGCCCTTCCCCAGCATCCAGGCGG < 41bp 1 0.0286916401616915 1 0.0413260459899902 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021526 chr7:130021521 synonymous SNV . 0 16 hm5C_associated_SNPs_15210 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 1bp
chr7 130021521 130021521 1 + A G ACC 130021527 + 130021507 130021547 41 CCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGT CCCATCGACGTCCGGGTGCCCTTCCCCAGCATCCAGGCGGT < 41bp 1 0.171762194621198 1 0.0769788920879364 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021527 chr7:130021521 synonymous SNV . 0 15 hm5C_associated_SNPs_15211 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 51bp
chr7 130021521 130021521 1 + A G ACC 130021527 + 130021507 130021547 41 CCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGT CCCATCGACGTCCGGGTGCCCTTCCCCAGCATCCAGGCGGT < 41bp 1 0.171762194621198 1 0.0769788920879364 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021527 chr7:130021521 synonymous SNV . 0 15 hm5C_associated_SNPs_15211 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 1bp
chr7 130021521 130021521 1 + A G ACC 130021530 + 130021510 130021550 41 ATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAA ATCGACGTCCGGGTGCCCTTCCCCAGCATCCAGGCGGTCAA < 41bp 1 0.742250063458103 1 0.80959951877594 experiment 0.515499873083794 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021530 chr7:130021521 synonymous SNV . 0 12 hm5C_associated_SNPs_15212 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 51bp
chr7 130021521 130021521 1 + A G ACC 130021530 + 130021510 130021550 41 ATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAA ATCGACGTCCGGGTGCCCTTCCCCAGCATCCAGGCGGTCAA < 41bp 1 0.742250063458103 1 0.80959951877594 experiment 0.515499873083794 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021530 chr7:130021521 synonymous SNV . 0 12 hm5C_associated_SNPs_15212 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 1bp
chr7 130021521 130021521 1 + A G ACC 130021531 + 130021511 130021551 41 TCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAG TCGACGTCCGGGTGCCCTTCCCCAGCATCCAGGCGGTCAAG < 41bp 1 0.370434471764249 1 0.768978595733643 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021531 chr7:130021521 synonymous SNV . 0 11 hm5C_associated_SNPs_15213 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 51bp
chr7 130021521 130021521 1 + A G ACC 130021531 + 130021511 130021551 41 TCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAG TCGACGTCCGGGTGCCCTTCCCCAGCATCCAGGCGGTCAAG < 41bp 1 0.370434471764249 1 0.768978595733643 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021531 chr7:130021521 synonymous SNV . 0 11 hm5C_associated_SNPs_15213 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 1bp
chr7 130021521 130021521 1 + A G ACC 130021532 + 130021512 130021552 41 CGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGA CGACGTCCGGGTGCCCTTCCCCAGCATCCAGGCGGTCAAGA < 41bp 1 0.386586963323561 1 0.304381161928177 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021532 chr7:130021521 synonymous SNV . 0 10 hm5C_associated_SNPs_15214 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 51bp
chr7 130021521 130021521 1 + A G ACC 130021532 + 130021512 130021552 41 CGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGA CGACGTCCGGGTGCCCTTCCCCAGCATCCAGGCGGTCAAGA < 41bp 1 0.386586963323561 1 0.304381161928177 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021532 chr7:130021521 synonymous SNV . 0 10 hm5C_associated_SNPs_15214 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 1bp
chr7 130021521 130021521 1 + A G ACC 130021536 + 130021516 130021556 41 GTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT GTCCGGGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT < 41bp 1 0.159655907572367 1 0.143982738256454 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021536 chr7:130021521 synonymous SNV . 0 6 hm5C_associated_SNPs_15215 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 51bp
chr7 130021521 130021521 1 + A G ACC 130021536 + 130021516 130021556 41 GTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT GTCCGGGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT < 41bp 1 0.159655907572367 1 0.143982738256454 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021536 chr7:130021521 synonymous SNV . 0 6 hm5C_associated_SNPs_15215 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 1bp
chr7 130021521 130021521 1 + A G ACC 130021539 + 130021519 130021559 41 CGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCT CGGGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCT < 41bp 1 0.394718193535848 1 0.327404767274857 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021539 chr7:130021521 synonymous SNV . 0 3 hm5C_associated_SNPs_15216 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 51bp
chr7 130021521 130021521 1 + A G ACC 130021539 + 130021519 130021559 41 CGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCT CGGGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCT < 41bp 1 0.394718193535848 1 0.327404767274857 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021539 chr7:130021521 synonymous SNV . 0 3 hm5C_associated_SNPs_15216 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 1bp
chr7 130021521 130021521 1 + A G ACC 130021540 + 130021520 130021560 41 GAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCTG GGGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCTG < 41bp 1 0.746280181193397 1 0.767909824848175 experiment 0.507439637613206 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021540 chr7:130021521 synonymous SNV . 0 2 hm5C_associated_SNPs_15217 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 51bp
chr7 130021521 130021521 1 + A G ACC 130021540 + 130021520 130021560 41 GAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCTG GGGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCTG < 41bp 1 0.746280181193397 1 0.767909824848175 experiment 0.507439637613206 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021540 chr7:130021521 synonymous SNV . 0 2 hm5C_associated_SNPs_15217 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 1bp
chr5 172315747 172315747 1 + G A ACC 172315759 + 172315739 172315779 41 CAGCCAACGTACACCGGGGCCATTAGTGAGTAGCCAACCTC CAGCCAACATACACCGGGGCCATTAGTGAGTAGCCAACCTC < 41bp 1 0.132998882898577 1 0.0603305399417877 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ERGIC1 ENSG00000113719 CDS Human protein_coding chr5:172315759 chr5:172315747 synonymous SNV . 0 9 hm5C_associated_SNPs_15218 0 0 1 0 2 ERGIC1 chr5:172315702 3'AG 172315702 Downstream 46bp
chr5 172315747 172315747 1 + G A ACC 172315759 + 172315739 172315779 41 CAGCCAACGTACACCGGGGCCATTAGTGAGTAGCCAACCTC CAGCCAACATACACCGGGGCCATTAGTGAGTAGCCAACCTC < 41bp 1 0.132998882898577 1 0.0603305399417877 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ERGIC1 ENSG00000113719 CDS Human protein_coding chr5:172315759 chr5:172315747 synonymous SNV . 0 9 hm5C_associated_SNPs_15218 0 0 1 0 2 ERGIC1 chr5:172315763 5'GT 172315763 Upstream 17bp
chr9 100079354 100079354 1 + A C ACC 100079373 + 100079353 100079393 41 AACTATGCCCTGCTGGGCAACCGGAAGGCTCTCGCCCAGCT ACCTATGCCCTGCTGGGCAACCGGAAGGCTCTCGCCCAGCT < 41bp 1 0.724589660599808 1 0.594037592411041 experiment 0.550820678800385 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100079373 chr9:100079354 nonsynonymous SNV 0.985 3 2 hm5C_associated_SNPs_15219 0 0 1 2 1 CCDC180 chr9:100079347 3'AG 100079347 Downstream 8bp
chr19 38780794 38780794 1 + C T ACC 38780801 + 38780781 38780821 41 CACTGGGCCTTGCCGTGCATCCTTCCCACGCTGGTACTTTG CACTGGGCCTTGCTGTGCATCCTTCCCACGCTGGTACTTTG < 41bp 1 0.0142921336865057 1 0.083954930305481 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPINT2 ENSG00000167642;ENSG00000267748 CDS Human other chr19:38780801 chr19:38780794 nonsynonymous SNV 0.697 4 14 hm5C_associated_SNPs_15220 0 0 1 0 1 SPINT2 chr19:38780759 3'AG 38780759 Downstream 36bp
chrX 153669455 153669455 1 + C A ACC 153669437 + 153669417 153669457 41 CTTCACCGGAGCTGCTCTCACCACAGATTGAGTGCCATCTA CTTCACCGGAGCTGCTCTCACCACAGATTGAGTGCCATATA < 41bp 1 0.723586049147844 1 0.507371068000793 experiment 0.552827901704312 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GDI1 ENSG00000203879 CDS Human protein_coding chrX:153669437 chrX:153669455 synonymous SNV . 0 39 hm5C_associated_SNPs_15221 0 0 1 3 2 GDI1 chrX:153669443 3'AG 153669443 Downstream 13bp
chrX 153669455 153669455 1 + C A ACC 153669437 + 153669417 153669457 41 CTTCACCGGAGCTGCTCTCACCACAGATTGAGTGCCATCTA CTTCACCGGAGCTGCTCTCACCACAGATTGAGTGCCATATA < 41bp 1 0.723586049147844 1 0.507371068000793 experiment 0.552827901704312 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GDI1 ENSG00000203879 CDS Human protein_coding chrX:153669437 chrX:153669455 synonymous SNV . 0 39 hm5C_associated_SNPs_15221 0 0 1 3 2 GDI1 chrX:153669542 5'GT 153669542 Upstream 88bp
chr6 7393387 7393387 1 + C T ACC 7393371 + 7393351 7393391 41 ACAGTCAAAGAGAAGGATGACATTCTGTTTGAAGACCTTCA ACAGTCAAAGAGAAGGATGACATTCTGTTTGAAGACTTTCA < 41bp 1 0.0683799153216622 1 0.0457217991352081 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7393371 chr6:7393387 nonsynonymous SNV 0.024 0 37 hm5C_associated_SNPs_15222 0 0 1 0 1 RIOK1 chr6:7393332 3'AG 7393332 Downstream 56bp
chr7 99701292 99701292 1 + G A ACC 99701304 + 99701284 99701324 41 GCCGCCCCGTCCTGTCCAGTCGCTCTGACCAGGTGAGGGAA GCCGCCCCATCCTGTCCAGTCGCTCTGACCAGGTGAGGGAA < 41bp 1 0.397398693898614 1 0.286275714635849 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99701304 chr7:99701292 nonsynonymous SNV 0.975 1 9 hm5C_associated_SNPs_15223 0 0 1 0 2 AP4M1 chr7:99701235 3'AG 99701235 Downstream 58bp
chr7 99701292 99701292 1 + G A ACC 99701304 + 99701284 99701324 41 GCCGCCCCGTCCTGTCCAGTCGCTCTGACCAGGTGAGGGAA GCCGCCCCATCCTGTCCAGTCGCTCTGACCAGGTGAGGGAA < 41bp 1 0.397398693898614 1 0.286275714635849 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99701304 chr7:99701292 nonsynonymous SNV 0.975 1 9 hm5C_associated_SNPs_15223 0 0 1 0 2 AP4M1 chr7:99701315 5'GT 99701315 Upstream 24bp
chr3 9854684 9854684 1 + C T BLCA 9854668 + 9854648 9854688 41 CAAGGCTGCTACCCGGTGATCCGGTGTCTCTTGCGCCGGAG CAAGGCTGCTACCCGGTGATCCGGTGTCTCTTGCGCTGGAG < 41bp 1 0.413516553498184 1 0.749848008155823 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARPC4-TTLL3;TTLL3 ENSG00000214021;ENSG00000250151 CDS Human other chr3:9854668 chr3:9854684 nonsynonymous SNV 0.864 1 37 hm5C_associated_SNPs_15225 0 0 1 0 1 ARPC4-TTLL3;TTLL3 chr3:9854627 3'AG 9854627 Downstream 58bp
chr7 44098978 44098978 1 + G C BLCA 44098968 + 44098948 44098988 41 TGCAGGCAAGCTGAGGAGCCCCTTCCTGCAGAAGCAGCTCA TGCAGGCAAGCTGAGGAGCCCCTTCCTGCACAAGCAGCTCA < 41bp 1 0.020922217680845 1 0.0257122218608856 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DBNL ENSG00000136279 CDS Human protein_coding chr7:44098968 chr7:44098978 nonsynonymous SNV 0.999 2 31 hm5C_associated_SNPs_15226 0 0 1 0 1 DBNL chr7:44098953 3'AG 44098953 Downstream 26bp
chr8 25181401 25181401 1 + C T BLCA 25181381 + 25181361 25181401 41 CAGCCAGAGATAAATCGGAGCGAGCATTTGGGGTGGCCTTC CAGCCAGAGATAAATCGGAGCGAGCATTTGGGGTGGCCTTT < 41bp 1 0.149341170759757 1 0.362023800611496 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25181381 chr8:25181401 synonymous SNV . 0 41 hm5C_associated_SNPs_15228 0 0 1 0 3 DOCK5 chr8:25181364 3'AG 25181364 Downstream 38bp
chr8 25181401 25181401 1 + C T BLCA 25181381 + 25181361 25181401 41 CAGCCAGAGATAAATCGGAGCGAGCATTTGGGGTGGCCTTC CAGCCAGAGATAAATCGGAGCGAGCATTTGGGGTGGCCTTT < 41bp 1 0.149341170759757 1 0.362023800611496 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25181381 chr8:25181401 synonymous SNV . 0 41 hm5C_associated_SNPs_15228 0 0 1 0 3 DOCK5 chr8:25181368 3'AG 25181368 Downstream 34bp
chr8 25181401 25181401 1 + C T BLCA 25181381 + 25181361 25181401 41 CAGCCAGAGATAAATCGGAGCGAGCATTTGGGGTGGCCTTC CAGCCAGAGATAAATCGGAGCGAGCATTTGGGGTGGCCTTT < 41bp 1 0.149341170759757 1 0.362023800611496 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25181381 chr8:25181401 synonymous SNV . 0 41 hm5C_associated_SNPs_15228 0 0 1 0 3 DOCK5 chr8:25181467 5'GT 25181467 Upstream 67bp
chr1 180794031 180794031 1 + C T BLCA 180794028 + 180794008 180794048 41 GCTGGAGTAAACCATGTACTCATCTTTGAACTTAATCCGAG GCTGGAGTAAACCATGTACTCATTTTTGAACTTAATCCGAG < 41bp 1 0.193331097317247 1 0.369758248329163 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control XPR1 ENSG00000143324 CDS Human protein_coding chr1:180794028 chr1:180794031 synonymous SNV . 0 24 hm5C_associated_SNPs_15229 0 0 1 0 1 XPR1 chr1:180794079 5'GT 180794079 Upstream 49bp
chr12 6973993 6973993 1 + C T BLCA 6974006 + 6973986 6974026 41 ACTCCATCTCTGAGTCTGTGCCAGTGGGACCTAAAGTCCGG ACTCCATTTCTGAGTCTGTGCCAGTGGGACCTAAAGTCCGG < 41bp 1 0.339491699049995 1 0.240573316812515 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP5 ENSG00000111667 CDS Human protein_coding chr12:6974006 chr12:6973993 synonymous SNV . 0 8 hm5C_associated_SNPs_15230 0 0 0 0 1 USP5 chr12:6974039 5'GT 6974039 Upstream 47bp
chr1 44083231 44083231 1 + C G BLCA 44083229 + 44083209 44083249 41 CACTCTCGAGTCATCCTTACCTCTATCGATGGTGAGCCAAG CACTCTCGAGTCATCCTTACCTGTATCGATGGTGAGCCAAG < 41bp 1 0.417299849118504 1 0.292266309261322 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44083229 chr1:44083231 nonsynonymous SNV 0.935 2 23 hm5C_associated_SNPs_15231 0 0 0 0 1 PTPRF chr1:44083239 5'GT 44083239 Upstream 9bp
chr1 150280534 150280534 1 + G T BLCA 150280549 + 150280529 150280569 41 ATTATGAGAAGCCATGCCGCCGGCGACAGAGGGAAAGCTAT ATTATTAGAAGCCATGCCGCCGGCGACAGAGGGAAAGCTAT < 41bp 1 0.68063651598352 1 0.747945666313171 experiment 0.63872696803296 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPS21 ENSG00000187145 CDS Human other chr1:150280549 chr1:150280534 stopgain 0.999 0 6 hm5C_associated_SNPs_15233 0 0 1 0 1 MRPS21 chr1:150280482 3'AG 150280482 Downstream 53bp
chr5 908553 908553 1 + G A BLCA 908541 + 908521 908561 41 TCAGATGCCATCCGCGTGGTCAATGCTGTCTTGACCCAAAT TCAGATGCCATCCGCGTGGTCAATGCTGTCTTAACCCAAAT < 41bp 1 0.36195163000525 1 0.195208191871643 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908541 chr5:908553 synonymous SNV . 0 33 hm5C_associated_SNPs_15236 0 0 0 0 2 TRIP13 chr5:908470 3'AG 908470 Downstream 84bp
chr5 908553 908553 1 + G A BLCA 908541 + 908521 908561 41 TCAGATGCCATCCGCGTGGTCAATGCTGTCTTGACCCAAAT TCAGATGCCATCCGCGTGGTCAATGCTGTCTTAACCCAAAT < 41bp 1 0.36195163000525 1 0.195208191871643 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908541 chr5:908553 synonymous SNV . 0 33 hm5C_associated_SNPs_15236 0 0 0 0 2 TRIP13 chr5:908576 5'GT 908576 Upstream 24bp
chr19 1440439 1440439 1 + C T BLCA 1440440 + 1440420 1440460 41 ATCGGGGCCACCCACTCCTCCCGCTTCATCCCTCTCAAGTA ATCGGGGCCACCCACTCCTTCCGCTTCATCCCTCTCAAGTA < 41bp 1 0.305478133574693 1 0.235934227705002 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS15 ENSG00000115268 CDS Human protein_coding chr19:1440440 chr19:1440439 nonsynonymous SNV 0.967 1 20 hm5C_associated_SNPs_15239 0 0 1 0 1 RPS15 chr19:1440348 3'AG 1440348 Downstream 92bp
chr19 1440439 1440439 1 + C T BLCA 1440441 + 1440421 1440461 41 TCGGGGCCACCCACTCCTCCCGCTTCATCCCTCTCAAGTAA TCGGGGCCACCCACTCCTTCCGCTTCATCCCTCTCAAGTAA < 41bp 1 0.28797147897483 1 0.440315157175064 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS15 ENSG00000115268 CDS Human protein_coding chr19:1440441 chr19:1440439 nonsynonymous SNV 0.967 1 19 hm5C_associated_SNPs_15240 0 0 1 0 1 RPS15 chr19:1440348 3'AG 1440348 Downstream 92bp
chr10 135197569 135197569 1 + T A BLCA 135197583 + 135197563 135197603 41 TCTTCCTGGAGTTTGAGGAGCCCTTCTGGGAGCCAGACTGC TCTTCCAGGAGTTTGAGGAGCCCTTCTGGGAGCCAGACTGC < 41bp 1 0.0771531064538299 1 0.0571873784065247 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PAOX ENSG00000148832 CDS Human protein_coding chr10:135197583 chr10:135197569 nonsynonymous SNV 0.997 5 7 hm5C_associated_SNPs_15241 0 0 0 2 1 PAOX chr10:135197474 3'AG 135197474 Downstream 96bp
chr19 11215960 11215960 1 + C T BLCA 11215952 + 11215932 11215972 41 ACGATGGGAAGTGCATCTCTCGGCAGTTCGTCTGTGACTCA ACGATGGGAAGTGCATCTCTCGGCAGTTTGTCTGTGACTCA < 41bp 1 0.788161554433405 1 0.824134707450867 experiment 0.42367689113319 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LDLR ENSG00000130164 CDS Human protein_coding chr19:11215952 chr19:11215960 synonymous SNV . 0 29 hm5C_associated_SNPs_15242 0 0 1 0 1 LDLR chr19:11215896 3'AG 11215896 Downstream 65bp
chr11 33667299 33667299 1 + C G BLCA 33667280 + 33667260 33667300 41 ACATTGACAGAGTTCCTGAGCCCCGGGGCTATTCCAGGTCT ACATTGACAGAGTTCCTGAGCCCCGGGGCTATTCCAGGTGT < 41bp 1 0.263473616019131 1 0.121978282928467 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33667280 chr11:33667299 nonsynonymous SNV 0.834 2 40 hm5C_associated_SNPs_15243 0 0 0 0 1 KIAA1549L chr11:33667232 3'AG 33667232 Downstream 68bp
chr14 61997260 61997260 1 + G A BLCA 61997276 + 61997256 61997296 41 TGATGAGGTGGTCTACCCTACCTGGCTCCATGAAGATGCCA TGATAAGGTGGTCTACCCTACCTGGCTCCATGAAGATGCCA < 41bp 1 0.103556060271879 1 0.092462420463562 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRKCH ENSG00000027075;ENSG00000258989 CDS Human other chr14:61997276 chr14:61997260 nonsynonymous SNV 0.994 1 5 hm5C_associated_SNPs_15244 0 0 0 0 1 PRKCH chr14:61997313 5'GT 61997313 Upstream 54bp
chr5 140084142 140084142 1 + G A BLCA 140084145 + 140084125 140084165 41 TTGAGGAAAGGATGAAGGAGCTCAGAGAAGAGGTAAGGGTC TTGAGGAAAGGATGAAGAAGCTCAGAGAAGAGGTAAGGGTC < 41bp 1 0.681439146131567 1 0.517048299312592 experiment 0.637121707736867 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084145 chr5:140084142 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_15245 0 0 1 0 1 ZMAT2 chr5:140084156 5'GT 140084156 Upstream 15bp
chr5 140084142 140084142 1 + G A BLCA 140084147 + 140084127 140084167 41 GAGGAAAGGATGAAGGAGCTCAGAGAAGAGGTAAGGGTCTC GAGGAAAGGATGAAGAAGCTCAGAGAAGAGGTAAGGGTCTC < 41bp 1 0.77021426489137 1 0.535973072052002 experiment 0.45957147021726 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084147 chr5:140084142 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_15246 0 0 1 0 1 ZMAT2 chr5:140084156 5'GT 140084156 Upstream 15bp
chr2 169626102 169626102 1 + C T BLCA 169626121 + 169626101 169626141 41 GCGACAACCACCAATGGGACCAGTGGTACCAACGGGTATCT GTGACAACCACCAATGGGACCAGTGGTACCAACGGGTATCT < 41bp 1 0.33879551883205 1 0.15611606836319 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169626121 chr2:169626102 nonsynonymous SNV 0.990 0 2 hm5C_associated_SNPs_15248 0 0 1 0 1 CERS6 chr2:169626020 3'AG 169626020 Downstream 83bp
chr16 58286717 58286717 1 + G A BLCA 58286704 + 58286684 58286724 41 CTAAACTGGAGCCCAGGGATCAGCGACCTCCACGATTATCA CTAAACTGGAGCCCAGGGATCAGCGACCTCCACAATTATCA < 41bp 1 0.481590870022551 1 0.476700633764267 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58286704 chr16:58286717 nonsynonymous SNV 0.010 0 34 hm5C_associated_SNPs_15250 0 0 0 0 2 CCDC113 chr16:58286631 3'AG 58286631 Downstream 87bp
chr16 58286717 58286717 1 + G A BLCA 58286704 + 58286684 58286724 41 CTAAACTGGAGCCCAGGGATCAGCGACCTCCACGATTATCA CTAAACTGGAGCCCAGGGATCAGCGACCTCCACAATTATCA < 41bp 1 0.481590870022551 1 0.476700633764267 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58286704 chr16:58286717 nonsynonymous SNV 0.010 0 34 hm5C_associated_SNPs_15250 0 0 0 0 2 CCDC113 chr16:58286757 5'GT 58286757 Upstream 41bp
chr17 72239552 72239552 1 + C A BLCA 72239546 + 72239526 72239566 41 CTCCTGCTCTTTATCCTGGACCTGGTCATCTGCCTCATTGC CTCCTGCTCTTTATCCTGGACCTGGTAATCTGCCTCATTGC < 41bp 1 0.159466882109273 1 0.0625333189964294 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72239546 chr17:72239552 synonymous SNV . 0 27 hm5C_associated_SNPs_15251 0 0 1 0 2 TTYH2 chr17:72239513 3'AG 72239513 Downstream 40bp
chr17 72239552 72239552 1 + C A BLCA 72239546 + 72239526 72239566 41 CTCCTGCTCTTTATCCTGGACCTGGTCATCTGCCTCATTGC CTCCTGCTCTTTATCCTGGACCTGGTAATCTGCCTCATTGC < 41bp 1 0.159466882109273 1 0.0625333189964294 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72239546 chr17:72239552 synonymous SNV . 0 27 hm5C_associated_SNPs_15251 0 0 1 0 2 TTYH2 chr17:72239608 5'GT 72239608 Upstream 57bp
chr12 112227677 112227677 1 + A C BLCA 112227678 + 112227658 112227698 41 GGGAAAACCATCCCCATTGACGGAGACTTCTTCAGCTACAC GGGAAAACCATCCCCATTGCCGGAGACTTCTTCAGCTACAC < 41bp 1 0.723440938504651 1 0.877638578414917 experiment 0.553118122990698 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112227678 chr12:112227677 nonsynonymous SNV 0.835 2 20 hm5C_associated_SNPs_15252 0 0 1 0 2 ALDH2 chr12:112227627 3'AG 112227627 Downstream 51bp
chr12 112227677 112227677 1 + A C BLCA 112227678 + 112227658 112227698 41 GGGAAAACCATCCCCATTGACGGAGACTTCTTCAGCTACAC GGGAAAACCATCCCCATTGCCGGAGACTTCTTCAGCTACAC < 41bp 1 0.723440938504651 1 0.877638578414917 experiment 0.553118122990698 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112227678 chr12:112227677 nonsynonymous SNV 0.835 2 20 hm5C_associated_SNPs_15252 0 0 1 0 2 ALDH2 chr12:112227738 5'GT 112227738 Upstream 62bp
chr22 42033762 42033762 1 + G A BLCA 42033761 + 42033741 42033781 41 AAGACCTGTTGCGGAAGGTTCGCGCCAAGGAGACCAGGAAG AAGACCTGTTGCGGAAGGTTCACGCCAAGGAGACCAGGAAG < 41bp 1 0.528265732241161 1 0.478497445583344 experiment 0.943468535517678 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42033761 chr22:42033762 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_15253 0 0 1 0 1 XRCC6 chr22:42033795 5'GT 42033795 Upstream 34bp
chr22 42033762 42033762 1 + G A BLCA 42033765 + 42033745 42033785 41 CCTGTTGCGGAAGGTTCGCGCCAAGGAGACCAGGAAGCGAG CCTGTTGCGGAAGGTTCACGCCAAGGAGACCAGGAAGCGAG < 41bp 1 0.602618570934505 1 0.356295675039291 experiment 0.794762858130989 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42033765 chr22:42033762 nonsynonymous SNV 0.996 2 18 hm5C_associated_SNPs_15254 0 0 1 0 1 XRCC6 chr22:42033795 5'GT 42033795 Upstream 34bp
chr22 42033762 42033762 1 + G A BLCA 42033766 + 42033746 42033786 41 CTGTTGCGGAAGGTTCGCGCCAAGGAGACCAGGAAGCGAGC CTGTTGCGGAAGGTTCACGCCAAGGAGACCAGGAAGCGAGC < 41bp 1 0.770453737031373 1 0.797075152397156 experiment 0.459092525937253 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42033766 chr22:42033762 nonsynonymous SNV 0.996 2 17 hm5C_associated_SNPs_15255 0 0 1 0 1 XRCC6 chr22:42033795 5'GT 42033795 Upstream 34bp
chr16 70589054 70589054 1 + G A BLCA 70589071 + 70589051 70589091 41 AGCGACAAGTGGTGATTGCCCTGACAGGAGGAGAGCTGGTC AGCAACAAGTGGTGATTGCCCTGACAGGAGGAGAGCTGGTC < 41bp 1 0.295239261451154 1 0.154723137617111 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589071 chr16:70589054 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_15256 0 0 1 0 1 SF3B3 chr16:70589109 5'GT 70589109 Upstream 56bp
chr11 82921451 82921451 1 + G A BLCA 82921433 + 82921413 82921453 41 AACTCATGGACATTCTTTCACTTTACAAATAATGCTCCGAA AACTCATGGACATTCTTTCACTTTACAAATAATGCTCCAAA < 41bp 1 0.306713733645243 1 0.0482926666736603 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD42 ENSG00000137494 CDS Human protein_coding chr11:82921433 chr11:82921451 nonsynonymous SNV 0.991 1 39 hm5C_associated_SNPs_15257 0 0 0 0 2 ANKRD42 chr11:82921458 5'GT 82921458 Upstream 8bp
chr11 82921451 82921451 1 + G A BLCA 82921433 + 82921413 82921453 41 AACTCATGGACATTCTTTCACTTTACAAATAATGCTCCGAA AACTCATGGACATTCTTTCACTTTACAAATAATGCTCCAAA < 41bp 1 0.306713733645243 1 0.0482926666736603 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD42 ENSG00000137494 CDS Human protein_coding chr11:82921433 chr11:82921451 nonsynonymous SNV 0.991 1 39 hm5C_associated_SNPs_15257 0 0 0 0 2 ANKRD42 chr11:82921461 5'GT 82921461 Upstream 11bp
chr5 33445453 33445453 1 + A C BLCA 33445465 + 33445445 33445485 41 GAGAAGCAAAAGGAAGGAGGCAAAAAGAAGAACAAAGAAGG GAGAAGCACAAGGAAGGAGGCAAAAAGAAGAACAAAGAAGG < 41bp 1 0.505178806567191 1 0.497152715921402 experiment 0.989642386865617 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TARS ENSG00000113407 CDS Human protein_coding chr5:33445465 chr5:33445453 nonsynonymous SNV 0.975 0 9 hm5C_associated_SNPs_15260 0 0 1 0 2 TARS chr5:33445430 3'AG 33445430 Downstream 24bp
chr5 33445453 33445453 1 + A C BLCA 33445465 + 33445445 33445485 41 GAGAAGCAAAAGGAAGGAGGCAAAAAGAAGAACAAAGAAGG GAGAAGCACAAGGAAGGAGGCAAAAAGAAGAACAAAGAAGG < 41bp 1 0.505178806567191 1 0.497152715921402 experiment 0.989642386865617 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TARS ENSG00000113407 CDS Human protein_coding chr5:33445465 chr5:33445453 nonsynonymous SNV 0.975 0 9 hm5C_associated_SNPs_15260 0 0 1 0 2 TARS chr5:33445510 5'GT 33445510 Upstream 58bp
chr11 68363567 68363567 1 + C T BLCA 68363565 + 68363545 68363585 41 TGGGTCTTGTTTTTCCTTAGCTCGGGGAGTACAGACAGTGA TGGGTCTTGTTTTTCCTTAGCTTGGGGAGTACAGACAGTGA < 41bp 1 0.387742341537738 1 0.406933605670929 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68363565 chr11:68363567 nonsynonymous SNV 0.938 3 23 hm5C_associated_SNPs_15261 0 0 1 0 1 PPP6R3 chr11:68363565 3'AG 68363565 Downstream 3bp
chr11 68363567 68363567 1 + C T BLCA 68363576 + 68363556 68363596 41 TTTCCTTAGCTCGGGGAGTACAGACAGTGAGGAAAGTACAG TTTCCTTAGCTTGGGGAGTACAGACAGTGAGGAAAGTACAG < 41bp 1 0.223157016834509 1 0.484497457742691 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68363576 chr11:68363567 nonsynonymous SNV 0.938 3 12 hm5C_associated_SNPs_15262 0 0 1 0 1 PPP6R3 chr11:68363565 3'AG 68363565 Downstream 3bp
chr4 174239626 174239626 1 + G A BLCA 174239643 + 174239623 174239663 41 CCAGTGTTTGACAAAGGGAGCTGATGGATCAAAAGTTATGA CCAATGTTTGACAAAGGGAGCTGATGGATCAAAAGTTATGA < 41bp 1 0.177739650240503 1 0.0751466155052185 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT7 ENSG00000109586 CDS Human protein_coding chr4:174239643 chr4:174239626 synonymous SNV . 0 4 hm5C_associated_SNPs_15263 0 0 1 0 2 GALNT7 chr4:174239582 3'AG 174239582 Downstream 45bp
chr4 174239626 174239626 1 + G A BLCA 174239643 + 174239623 174239663 41 CCAGTGTTTGACAAAGGGAGCTGATGGATCAAAAGTTATGA CCAATGTTTGACAAAGGGAGCTGATGGATCAAAAGTTATGA < 41bp 1 0.177739650240503 1 0.0751466155052185 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT7 ENSG00000109586 CDS Human protein_coding chr4:174239643 chr4:174239626 synonymous SNV . 0 4 hm5C_associated_SNPs_15263 0 0 1 0 2 GALNT7 chr4:174239710 5'GT 174239710 Upstream 85bp
chr21 38853090 38853090 1 + G A BLCA 38853089 + 38853069 38853109 41 GAAAAGTGGATGGATCGTTACGAAATTGACTCCTTGATAGG GAAAAGTGGATGGATCGTTACAAAATTGACTCCTTGATAGG < 41bp 1 0.589018839228191 1 0.493883311748505 experiment 0.821962321543619 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38853089 chr21:38853090 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_15264 0 0 1 0 1 DYRK1A chr21:38853128 5'GT 38853128 Upstream 39bp
chr10 105179351 105179351 1 + G T BLCA 105179366 + 105179346 105179386 41 CCCAAGAACTTCTCAGAAATCCATCCTGGAATGCTGCTCAT CCCAATAACTTCTCAGAAATCCATCCTGGAATGCTGCTCAT < 41bp 1 0.0655291428797075 1 0.162154346704483 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105179366 chr10:105179351 nonsynonymous SNV 0.849 3 6 hm5C_associated_SNPs_15265 0 0 1 0 1 PDCD11 chr10:105179295 3'AG 105179295 Downstream 57bp
chr1 116942124 116942124 1 + T G BLCA 116942108 + 116942088 116942128 41 TGAAGAGACAGCCCAGAAATCCCAAAACAGACAAACTTGTG TGAAGAGACAGCCCAGAAATCCCAAAACAGACAAACGTGTG < 41bp 1 0.452551151596438 1 0.433295667171478 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116942108 chr1:116942124 nonsynonymous SNV 0.988 5 37 hm5C_associated_SNPs_15268 0 0 1 0 2 ATP1A1 chr1:116942042 3'AG 116942042 Downstream 83bp
chr1 116942124 116942124 1 + T G BLCA 116942108 + 116942088 116942128 41 TGAAGAGACAGCCCAGAAATCCCAAAACAGACAAACTTGTG TGAAGAGACAGCCCAGAAATCCCAAAACAGACAAACGTGTG < 41bp 1 0.452551151596438 1 0.433295667171478 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116942108 chr1:116942124 nonsynonymous SNV 0.988 5 37 hm5C_associated_SNPs_15268 0 0 1 0 2 ATP1A1 chr1:116942165 5'GT 116942165 Upstream 42bp
chr1 116942124 116942124 1 + T G BLCA 116942109 + 116942089 116942129 41 GAAGAGACAGCCCAGAAATCCCAAAACAGACAAACTTGTGA GAAGAGACAGCCCAGAAATCCCAAAACAGACAAACGTGTGA < 41bp 1 0.221022915112388 1 0.349892318248749 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116942109 chr1:116942124 nonsynonymous SNV 0.988 5 36 hm5C_associated_SNPs_15269 0 0 1 0 2 ATP1A1 chr1:116942042 3'AG 116942042 Downstream 83bp
chr1 116942124 116942124 1 + T G BLCA 116942109 + 116942089 116942129 41 GAAGAGACAGCCCAGAAATCCCAAAACAGACAAACTTGTGA GAAGAGACAGCCCAGAAATCCCAAAACAGACAAACGTGTGA < 41bp 1 0.221022915112388 1 0.349892318248749 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116942109 chr1:116942124 nonsynonymous SNV 0.988 5 36 hm5C_associated_SNPs_15269 0 0 1 0 2 ATP1A1 chr1:116942165 5'GT 116942165 Upstream 42bp
chr1 116942124 116942124 1 + T G BLCA 116942110 + 116942090 116942130 41 AAGAGACAGCCCAGAAATCCCAAAACAGACAAACTTGTGAA AAGAGACAGCCCAGAAATCCCAAAACAGACAAACGTGTGAA < 41bp 1 0.579971612317062 1 0.50360518693924 experiment 0.840056775365876 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116942110 chr1:116942124 nonsynonymous SNV 0.988 5 35 hm5C_associated_SNPs_15270 0 0 1 0 2 ATP1A1 chr1:116942042 3'AG 116942042 Downstream 83bp
chr1 116942124 116942124 1 + T G BLCA 116942110 + 116942090 116942130 41 AAGAGACAGCCCAGAAATCCCAAAACAGACAAACTTGTGAA AAGAGACAGCCCAGAAATCCCAAAACAGACAAACGTGTGAA < 41bp 1 0.579971612317062 1 0.50360518693924 experiment 0.840056775365876 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116942110 chr1:116942124 nonsynonymous SNV 0.988 5 35 hm5C_associated_SNPs_15270 0 0 1 0 2 ATP1A1 chr1:116942165 5'GT 116942165 Upstream 42bp
chr6 110062695 110062695 1 + G T BLCA 110062698 + 110062678 110062718 41 CACTCTAATAGCTAGAAGATCCAGTAAATTTGCTGGCACCC CACTCTAATAGCTAGAATATCCAGTAAATTTGCTGGCACCC < 41bp 1 0.235752639010202 1 0.840641379356384 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FIG4 ENSG00000112367 CDS Human protein_coding chr6:110062698 chr6:110062695 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_15271 0 0 0 0 2 FIG4 chr6:110062647 3'AG 110062647 Downstream 49bp
chr6 110062695 110062695 1 + G T BLCA 110062698 + 110062678 110062718 41 CACTCTAATAGCTAGAAGATCCAGTAAATTTGCTGGCACCC CACTCTAATAGCTAGAATATCCAGTAAATTTGCTGGCACCC < 41bp 1 0.235752639010202 1 0.840641379356384 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FIG4 ENSG00000112367 CDS Human protein_coding chr6:110062698 chr6:110062695 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_15271 0 0 0 0 2 FIG4 chr6:110062747 5'GT 110062747 Upstream 53bp
chr7 150725686 150725686 1 + C A BLCA 150725672 + 150725652 150725692 41 GCAGGCTGCTACCGCCCCTCCGCTTCCAGACATTCTCAGCT GCAGGCTGCTACCGCCCCTCCGCTTCCAGACATTATCAGCT < 41bp 1 0.113484114083894 1 0.249595046043396 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150725672 chr7:150725686 nonsynonymous SNV 0.984 4 35 hm5C_associated_SNPs_15273 0 0 1 0 1 ABCB8 chr7:150725697 5'GT 150725697 Upstream 12bp
chr17 43220893 43220893 1 + C T BLCA 43220912 + 43220892 43220932 41 TCGTCGTCCAGTGGCTCTTCCGAATGTTTCGGACCCAAAAG TTGTCGTCCAGTGGCTCTTCCGAATGTTTCGGACCCAAAAG < 41bp 1 0.390368538462417 1 0.840431034564972 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43220912 chr17:43220893 nonsynonymous SNV 0.993 1 2 hm5C_associated_SNPs_15274 0 0 1 0 1 ACBD4 chr17:43220810 3'AG 43220810 Downstream 84bp
chr13 33349165 33349165 1 + G A BLCA 33349182 + 33349162 33349202 41 GGCGAAGTGCTAAAAGGGAACGGCGATGAACAAATGTAATT GGCAAAGTGCTAAAAGGGAACGGCGATGAACAAATGTAATT < 41bp 1 0.448436512546335 1 0.468169450759888 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDS5B ENSG00000083642 CDS Human protein_coding chr13:33349182 chr13:33349165 nonsynonymous SNV 0.994 4 4 hm5C_associated_SNPs_15275 0 0 0 0 1 PDS5B chr13:33349155 3'AG 33349155 Downstream 11bp
chr18 48446835 48446835 1 + G A BLCA 48446838 + 48446818 48446858 41 GTTTTTAGATATGGCCGGAACACACTCATTCAGTTCGAAGA GTTTTTAGATATGGCCGAAACACACTCATTCAGTTCGAAGA < 41bp 1 0.354313462737879 1 0.148431718349457 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ME2 ENSG00000082212 CDS Human protein_coding chr18:48446838 chr18:48446835 synonymous SNV . 0 18 hm5C_associated_SNPs_15276 0 0 1 0 1 ME2 chr18:48446826 3'AG 48446826 Downstream 10bp
chr3 158383145 158383145 1 + C A BLCA 158383132 + 158383112 158383152 41 TTCTTCTTTTAAAGAACGATCTGGAAAAATTTTCAAAAGGT TTCTTCTTTTAAAGAACGATCTGGAAAAATTTTAAAAAGGT < 41bp 1 0.582311790146532 1 0.671042263507843 experiment 0.835376419706936 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GFM1 ENSG00000168827 CDS Human protein_coding chr3:158383132 chr3:158383145 stopgain 1.000 1 34 hm5C_associated_SNPs_15277 0 0 0 0 1 GFM1 chr3:158383126 3'AG 158383126 Downstream 20bp
chr17 42427048 42427048 1 + G A BLCA 42427030 + 42427010 42427050 41 ATGCAGGTTTCTCTGTGTTCCACAGGCCGTGGCATGCGGGG ATGCAGGTTTCTCTGTGTTCCACAGGCCGTGGCATGCGAGG < 41bp 1 0.571027532554935 1 0.583874642848969 experiment 0.85794493489013 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRN ENSG00000030582 CDS Human protein_coding chr17:42427030 chr17:42427048 nonsynonymous SNV 0.005 0 39 hm5C_associated_SNPs_15279 0 0 1 0 2 GRN chr17:42427035 3'AG 42427035 Downstream 14bp
chr17 42427048 42427048 1 + G A BLCA 42427030 + 42427010 42427050 41 ATGCAGGTTTCTCTGTGTTCCACAGGCCGTGGCATGCGGGG ATGCAGGTTTCTCTGTGTTCCACAGGCCGTGGCATGCGAGG < 41bp 1 0.571027532554935 1 0.583874642848969 experiment 0.85794493489013 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRN ENSG00000030582 CDS Human protein_coding chr17:42427030 chr17:42427048 nonsynonymous SNV 0.005 0 39 hm5C_associated_SNPs_15279 0 0 1 0 2 GRN chr17:42427119 5'GT 42427119 Upstream 72bp
chr7 128486893 128486893 1 + G A BLCA 128486898 + 128486878 128486918 41 GGTAGCTGCACCGTGGAGTACATCCCCTTCACTCCTGGAGA GGTAGCTGCACCGTGAAGTACATCCCCTTCACTCCTGGAGA < 41bp 1 0.0405495353745744 1 0.0532926321029663 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486898 chr7:128486893 nonsynonymous SNV 0.993 5 16 hm5C_associated_SNPs_15280 0 0 1 0 2 FLNC chr7:128486799 3'AG 128486799 Downstream 95bp
chr7 128486893 128486893 1 + G A BLCA 128486898 + 128486878 128486918 41 GGTAGCTGCACCGTGGAGTACATCCCCTTCACTCCTGGAGA GGTAGCTGCACCGTGAAGTACATCCCCTTCACTCCTGGAGA < 41bp 1 0.0405495353745744 1 0.0532926321029663 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486898 chr7:128486893 nonsynonymous SNV 0.993 5 16 hm5C_associated_SNPs_15280 0 0 1 0 2 FLNC chr7:128486959 5'GT 128486959 Upstream 67bp
chr6 44199825 44199825 1 + G A BLCA 44199838 + 44199818 44199858 41 CAGCATCGCAGGCAGCAGCACCTGGGGTGAGGATGCCACAG CAGCATCACAGGCAGCAGCACCTGGGGTGAGGATGCCACAG < 41bp 1 0.300002074197559 1 0.444830775260925 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44199838 chr6:44199825 nonsynonymous SNV 0.497 0 8 hm5C_associated_SNPs_15281 0 0 1 0 2 SLC29A1 chr6:44199735 3'AG 44199735 Downstream 91bp
chr6 44199825 44199825 1 + G A BLCA 44199838 + 44199818 44199858 41 CAGCATCGCAGGCAGCAGCACCTGGGGTGAGGATGCCACAG CAGCATCACAGGCAGCAGCACCTGGGGTGAGGATGCCACAG < 41bp 1 0.300002074197559 1 0.444830775260925 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44199838 chr6:44199825 nonsynonymous SNV 0.497 0 8 hm5C_associated_SNPs_15281 0 0 1 0 2 SLC29A1 chr6:44199843 5'GT 44199843 Upstream 19bp
chr1 22307567 22307567 1 + C T BLCA 22307561 + 22307541 22307581 41 ACCTACCAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAA ACCTACCAGGTGGTGTTGGGCGAGTATGACCGTGCTGTGAA < 41bp 1 0.707186943642697 1 0.245204925537109 experiment 0.585626112714607 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307561 chr1:22307567 synonymous SNV . 0 27 hm5C_associated_SNPs_15283 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 37bp
chr1 22307567 22307567 1 + C T BLCA 22307561 + 22307541 22307581 41 ACCTACCAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAA ACCTACCAGGTGGTGTTGGGCGAGTATGACCGTGCTGTGAA < 41bp 1 0.707186943642697 1 0.245204925537109 experiment 0.585626112714607 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307561 chr1:22307567 synonymous SNV . 0 27 hm5C_associated_SNPs_15283 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 99bp
chr1 22307567 22307567 1 + C T BLCA 22307570 + 22307550 22307590 41 GTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCC GTGGTGTTGGGCGAGTATGACCGTGCTGTGAAGGAGGGCCC < 41bp 1 0.380210858895551 1 0.56317001581192 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307570 chr1:22307567 synonymous SNV . 0 18 hm5C_associated_SNPs_15284 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 37bp
chr1 22307567 22307567 1 + C T BLCA 22307570 + 22307550 22307590 41 GTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCC GTGGTGTTGGGCGAGTATGACCGTGCTGTGAAGGAGGGCCC < 41bp 1 0.380210858895551 1 0.56317001581192 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307570 chr1:22307567 synonymous SNV . 0 18 hm5C_associated_SNPs_15284 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 99bp
chr1 22307567 22307567 1 + C T BLCA 22307575 + 22307555 22307595 41 GTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCCCGAGC GTTGGGCGAGTATGACCGTGCTGTGAAGGAGGGCCCCGAGC < 41bp 1 0.568013785847324 1 0.0891948342323303 experiment 0.863972428305351 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307575 chr1:22307567 synonymous SNV . 0 13 hm5C_associated_SNPs_15285 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 37bp
chr1 22307567 22307567 1 + C T BLCA 22307575 + 22307555 22307595 41 GTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCCCGAGC GTTGGGCGAGTATGACCGTGCTGTGAAGGAGGGCCCCGAGC < 41bp 1 0.568013785847324 1 0.0891948342323303 experiment 0.863972428305351 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307575 chr1:22307567 synonymous SNV . 0 13 hm5C_associated_SNPs_15285 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 99bp
chr1 104115861 104115861 1 + G T BLCA 104115858 + 104115838 104115878 41 AAAACTGGAAGTGGAGATATCGAGAACTACAATGATGCTAC AAAACTGGAAGTGGAGATATCGATAACTACAATGATGCTAC < 41bp 1 0.571648194611677 1 0.787748396396637 experiment 0.856703610776645 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control AMY2B ENSG00000240038 CDS Human protein_coding chr1:104115858 chr1:104115861 nonsynonymous SNV 0.433 1 24 hm5C_associated_SNPs_15286 0 0 0 0 1 AMY2B chr1:104115882 5'GT 104115882 Upstream 22bp
chr1 104115861 104115861 1 + G T BLCA 104115875 + 104115855 104115895 41 TATCGAGAACTACAATGATGCTACTCAGGTAAATTTTTTTA TATCGATAACTACAATGATGCTACTCAGGTAAATTTTTTTA < 41bp 1 0.202860900683088 1 0.0716429054737091 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AMY2B ENSG00000240038 CDS Human protein_coding chr1:104115875 chr1:104115861 nonsynonymous SNV 0.433 1 7 hm5C_associated_SNPs_15287 0 0 0 0 1 AMY2B chr1:104115882 5'GT 104115882 Upstream 22bp
chr7 44100395 44100395 1 + C T BLCA 44100392 + 44100372 44100412 41 GCAGCCGACGACACAGAGATCTCCTTTGACCCCGAGAACCT GCAGCCGACGACACAGAGATCTCTTTTGACCCCGAGAACCT < 41bp 1 0.317676366944295 1 0.171483367681503 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DBNL ENSG00000136279 CDS Human protein_coding chr7:44100392 chr7:44100395 synonymous SNV . 0 24 hm5C_associated_SNPs_15289 0 0 1 0 1 DBNL chr7:44100376 3'AG 44100376 Downstream 20bp
chr20 30795782 30795782 1 + C T BLCA 30795786 + 30795766 30795806 41 CGGCCGCTGAGCGTGTCTTTCCTGCTGCTGCTTCTGCCGCT CGGCCGCTGAGCGTGTTTTTCCTGCTGCTGCTTCTGCCGCT < 41bp 1 0.441107514107279 1 0.154585927724838 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POFUT1 ENSG00000101346 CDS Human protein_coding chr20:30795786 chr20:30795782 nonsynonymous SNV 0.048 0 17 hm5C_associated_SNPs_15290 0 0 1 0 1 POFUT1 chr20:30795868 5'GT 30795868 Upstream 87bp
chr10 126205772 126205772 1 + C A BLCA 126205754 + 126205734 126205774 41 TCACTGCCGTGACAGGCCGTCATGATTGGGGACGATATCGT TCACTGCCGTGACAGGCCGTCATGATTGGGGACGATATAGT < 41bp 1 0.456148194384327 1 0.154253631830215 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LHPP ENSG00000107902 CDS Human protein_coding chr10:126205754 chr10:126205772 synonymous SNV . 0 39 hm5C_associated_SNPs_15291 0 0 0 0 2 LHPP chr10:126205749 3'AG 126205749 Downstream 24bp
chr10 126205772 126205772 1 + C A BLCA 126205754 + 126205734 126205774 41 TCACTGCCGTGACAGGCCGTCATGATTGGGGACGATATCGT TCACTGCCGTGACAGGCCGTCATGATTGGGGACGATATAGT < 41bp 1 0.456148194384327 1 0.154253631830215 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LHPP ENSG00000107902 CDS Human protein_coding chr10:126205754 chr10:126205772 synonymous SNV . 0 39 hm5C_associated_SNPs_15291 0 0 0 0 2 LHPP chr10:126205840 5'GT 126205840 Upstream 69bp
chr11 64032897 64032897 1 + C T BLCA 64032900 + 64032880 64032920 41 CATCAGCGGAAGGCAGTCACCCTCACCCGCCGCCTGCTGGA CATCAGCGGAAGGCAGTTACCCTCACCCGCCGCCTGCTGGA < 41bp 1 0.29143617721202 1 0.0713715851306915 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64032900 chr11:64032897 synonymous SNV . 0 18 hm5C_associated_SNPs_15294 0 0 0 0 1 PLCB3 chr11:64032974 5'GT 64032974 Upstream 78bp
chr2 157406241 157406241 1 + G A BLCA 157406248 + 157406228 157406268 41 ACCCCCAGACAGGGAAAGTGCGTGTGAGCGGCGCACGGTGC ACCCCCAGACAGGAAAAGTGCGTGTGAGCGGCGCACGGTGC < 41bp 1 0.54557571769621 1 0.352708637714386 experiment 0.90884856460758 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157406248 chr2:157406241 synonymous SNV . 0 14 hm5C_associated_SNPs_15295 0 0 0 1 1 GPD2 chr2:157406284 5'GT 157406284 Upstream 44bp
chr15 57545626 57545626 1 + G C BLCA 57545632 + 57545612 57545652 41 CAATTCAAACTATGGAGGATCAAGCCTTGTTGCAAGCAGTC CAATTCAAACTATGCAGGATCAAGCCTTGTTGCAAGCAGTC < 41bp 1 0.221351898987111 1 0.433252036571503 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57545632 chr15:57545626 nonsynonymous SNV 0.999 3 15 hm5C_associated_SNPs_15297 0 0 1 0 1 TCF12 chr15:57545666 5'GT 57545666 Upstream 41bp
chr7 142460325 142460325 1 + G C BLCA 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTCAG < 41bp 1 0.255770849865275 1 0.0919789373874664 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460325 synonymous SNV . 0 39 hm5C_associated_SNPs_15299 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 44bp
chr7 142460325 142460325 1 + G C BLCA 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTCAG < 41bp 1 0.255770849865275 1 0.0919789373874664 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460325 synonymous SNV . 0 39 hm5C_associated_SNPs_15299 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 94bp
chr7 142460325 142460325 1 + G C BLCA 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGGATGCTCCTGTGCTCAGCCAGGCTA < 41bp 1 0.469161796915438 1 0.210251539945602 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460325 synonymous SNV . 0 31 hm5C_associated_SNPs_15300 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 44bp
chr7 142460325 142460325 1 + G C BLCA 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGGATGCTCCTGTGCTCAGCCAGGCTA < 41bp 1 0.469161796915438 1 0.210251539945602 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460325 synonymous SNV . 0 31 hm5C_associated_SNPs_15300 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 94bp
chr7 142460325 142460325 1 + G C BLCA 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGGATGCTCCTGTGCTCAGCCAGGCTAAG < 41bp 1 0.205765563051912 1 0.128311932086945 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460325 synonymous SNV . 0 29 hm5C_associated_SNPs_15301 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 44bp
chr7 142460325 142460325 1 + G C BLCA 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGGATGCTCCTGTGCTCAGCCAGGCTAAG < 41bp 1 0.205765563051912 1 0.128311932086945 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460325 synonymous SNV . 0 29 hm5C_associated_SNPs_15301 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 94bp
chr7 142460325 142460325 1 + G C BLCA 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGGATGCTCCTGTGCTCAGCCAGGCTAAGT < 41bp 1 0.462619373495791 1 0.184933990240097 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460325 synonymous SNV . 0 28 hm5C_associated_SNPs_15302 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 44bp
chr7 142460325 142460325 1 + G C BLCA 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGGATGCTCCTGTGCTCAGCCAGGCTAAGT < 41bp 1 0.462619373495791 1 0.184933990240097 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460325 synonymous SNV . 0 28 hm5C_associated_SNPs_15302 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 94bp
chr7 142460325 142460325 1 + G C BLCA 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATGCTCCTGTGCTCAGCCAGGCTAAGTGTGAA < 41bp 1 0.408145400510009 1 0.0794940292835236 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460325 synonymous SNV . 0 23 hm5C_associated_SNPs_15303 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 44bp
chr7 142460325 142460325 1 + G C BLCA 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATGCTCCTGTGCTCAGCCAGGCTAAGTGTGAA < 41bp 1 0.408145400510009 1 0.0794940292835236 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460325 synonymous SNV . 0 23 hm5C_associated_SNPs_15303 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 94bp
chr7 142460325 142460325 1 + G C BLCA 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTCCTGTGCTCAGCCAGGCTAAGTGTGAAGCCTC < 41bp 1 0.347930463407886 1 0.451958775520325 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460325 synonymous SNV . 0 18 hm5C_associated_SNPs_15304 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 44bp
chr7 142460325 142460325 1 + G C BLCA 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTCCTGTGCTCAGCCAGGCTAAGTGTGAAGCCTC < 41bp 1 0.347930463407886 1 0.451958775520325 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460325 synonymous SNV . 0 18 hm5C_associated_SNPs_15304 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 94bp
chr7 142460325 142460325 1 + G C BLCA 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTCCTGTGCTCAGCCAGGCTAAGTGTGAAGCCTCC < 41bp 1 0.536939092636228 1 0.720018804073334 experiment 0.926121814727544 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460325 synonymous SNV . 0 17 hm5C_associated_SNPs_15305 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 44bp
chr7 142460325 142460325 1 + G C BLCA 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTCCTGTGCTCAGCCAGGCTAAGTGTGAAGCCTCC < 41bp 1 0.536939092636228 1 0.720018804073334 experiment 0.926121814727544 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460325 synonymous SNV . 0 17 hm5C_associated_SNPs_15305 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 94bp
chr7 142460325 142460325 1 + G C BLCA 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTGTGCTCAGCCAGGCTAAGTGTGAAGCCTCCTACC < 41bp 1 0.36092386626342 1 0.124357163906097 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460325 synonymous SNV . 0 13 hm5C_associated_SNPs_15306 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 44bp
chr7 142460325 142460325 1 + G C BLCA 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTGTGCTCAGCCAGGCTAAGTGTGAAGCCTCCTACC < 41bp 1 0.36092386626342 1 0.124357163906097 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460325 synonymous SNV . 0 13 hm5C_associated_SNPs_15306 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 94bp
chr7 142460325 142460325 1 + G C BLCA 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA CAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA < 41bp 1 0.0340312570651737 1 0.0923357605934143 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460325 synonymous SNV . 0 1 hm5C_associated_SNPs_15307 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 44bp
chr7 142460325 142460325 1 + G C BLCA 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA CAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA < 41bp 1 0.0340312570651737 1 0.0923357605934143 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460325 synonymous SNV . 0 1 hm5C_associated_SNPs_15307 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 94bp
chr4 123145733 123145733 1 + C G BLCA 123145724 + 123145704 123145744 41 GGTCTCCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG GGTCTCCAGCTGAGAGCACACGCTATGTTGTCAGCAGAAGG < 41bp 1 0.410975750319684 1 0.23302885890007 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123145724 chr4:123145733 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_15308 0 0 1 0 3 KIAA1109 chr4:123145653 3'AG 123145653 Downstream 81bp
chr4 123145733 123145733 1 + C G BLCA 123145724 + 123145704 123145744 41 GGTCTCCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG GGTCTCCAGCTGAGAGCACACGCTATGTTGTCAGCAGAAGG < 41bp 1 0.410975750319684 1 0.23302885890007 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123145724 chr4:123145733 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_15308 0 0 1 0 3 KIAA1109 chr4:123145656 3'AG 123145656 Downstream 78bp
chr4 123145733 123145733 1 + C G BLCA 123145724 + 123145704 123145744 41 GGTCTCCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG GGTCTCCAGCTGAGAGCACACGCTATGTTGTCAGCAGAAGG < 41bp 1 0.410975750319684 1 0.23302885890007 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123145724 chr4:123145733 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_15308 0 0 1 0 3 KIAA1109 chr4:123145832 5'GT 123145832 Upstream 100bp
chr17 40817778 40817778 1 + C T BLCA 40817780 + 40817760 40817800 41 TCATCGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC TCATCGGCCTCATCGCCTTGCTCATTCCCACCCCACGGCTC < 41bp 1 0.340453278098816 1 0.0377687215805054 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817780 chr17:40817778 nonsynonymous SNV 0.996 3 19 hm5C_associated_SNPs_15309 0 0 0 0 2 TUBG2 chr17:40817696 3'AG 40817696 Downstream 83bp
chr17 40817778 40817778 1 + C T BLCA 40817780 + 40817760 40817800 41 TCATCGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC TCATCGGCCTCATCGCCTTGCTCATTCCCACCCCACGGCTC < 41bp 1 0.340453278098816 1 0.0377687215805054 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817780 chr17:40817778 nonsynonymous SNV 0.996 3 19 hm5C_associated_SNPs_15309 0 0 0 0 2 TUBG2 chr17:40817845 5'GT 40817845 Upstream 68bp
chr14 102445745 102445745 1 + C G BLCA 102445731 + 102445711 102445751 41 CAGCTCCGGGTCCTTACACTCAGTGAAGACTCGCCCTACGA CAGCTCCGGGTCCTTACACTCAGTGAAGACTCGCGCTACGA < 41bp 1 0.205744841996261 1 0.498553574085236 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102445731 chr14:102445745 nonsynonymous SNV 0.212 4 35 hm5C_associated_SNPs_15310 0 0 1 0 2 DYNC1H1 chr14:102445656 3'AG 102445656 Downstream 90bp
chr14 102445745 102445745 1 + C G BLCA 102445731 + 102445711 102445751 41 CAGCTCCGGGTCCTTACACTCAGTGAAGACTCGCCCTACGA CAGCTCCGGGTCCTTACACTCAGTGAAGACTCGCGCTACGA < 41bp 1 0.205744841996261 1 0.498553574085236 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102445731 chr14:102445745 nonsynonymous SNV 0.212 4 35 hm5C_associated_SNPs_15310 0 0 1 0 2 DYNC1H1 chr14:102445829 5'GT 102445829 Upstream 85bp
chr19 14574940 14574940 1 + A G BLCA 14574942 + 14574922 14574962 41 CTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCCCATCGAGC CTCAGAAGAGCTCGCGGGGTCCTCCTTCCAGCCCATCGAGC < 41bp 1 0.044879683875932 1 0.120672881603241 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574942 chr19:14574940 nonsynonymous SNV 0.000 0 19 hm5C_associated_SNPs_15311 0 0 1 0 2 PKN1 chr19:14574872 3'AG 14574872 Downstream 69bp
chr19 14574940 14574940 1 + A G BLCA 14574942 + 14574922 14574962 41 CTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCCCATCGAGC CTCAGAAGAGCTCGCGGGGTCCTCCTTCCAGCCCATCGAGC < 41bp 1 0.044879683875932 1 0.120672881603241 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574942 chr19:14574940 nonsynonymous SNV 0.000 0 19 hm5C_associated_SNPs_15311 0 0 1 0 2 PKN1 chr19:14574965 5'GT 14574965 Upstream 26bp
chr1 109807624 109807624 1 + G C BLCA 109807629 + 109807609 109807649 41 CTTGGGCCATACTGTGAGACCAGGTAAGCAGACCAGGGCAT CTTGGGCCATACTGTCAGACCAGGTAAGCAGACCAGGGCAT < 41bp 1 0.413606298886796 1 0.555056929588318 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109807629 chr1:109807624 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_15312 0 0 1 0 1 CELSR2 chr1:109807631 5'GT 109807631 Upstream 8bp
chr17 37650822 37650822 1 + A G BLCA 37650826 + 37650806 37650846 41 CTAGACAATGAGAAAGAGGGCTTCCCAATCACAGCCATTCG CTAGACAATGAGAAAGGGGGCTTCCCAATCACAGCCATTCG < 41bp 1 0.0473123891234977 1 0.05026775598526 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37650826 chr17:37650822 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_15313 0 0 1 0 1 CDK12 chr17:37650777 3'AG 37650777 Downstream 46bp
chr19 34884827 34884827 1 + C G BLCA 34884810 + 34884790 34884830 41 AGCTCCCACTCATCCTGCTCCTGTTTCAGGACCAGCACTTC AGCTCCCACTCATCCTGCTCCTGTTTCAGGACCAGCAGTTC < 41bp 1 0.127767121104751 1 0.172495394945145 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34884810 chr19:34884827 nonsynonymous SNV 0.997 5 38 hm5C_associated_SNPs_15316 0 0 1 0 1 GPI chr19:34884819 3'AG 34884819 Downstream 9bp
chr5 179151700 179151700 1 + C T BLCA 179151689 + 179151669 179151709 41 TGGTATGGAGTATAAGAAAACTGATGCACCTCAACCGGATG TGGTATGGAGTATAAGAAAACTGATGCACCTTAACCGGATG < 41bp 1 0.514166852117783 1 0.437645673751831 experiment 0.971666295764434 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151689 chr5:179151700 stopgain 0.955 1 32 hm5C_associated_SNPs_15317 0 0 1 0 2 CANX chr5:179151658 3'AG 179151658 Downstream 43bp
chr5 179151700 179151700 1 + C T BLCA 179151689 + 179151669 179151709 41 TGGTATGGAGTATAAGAAAACTGATGCACCTCAACCGGATG TGGTATGGAGTATAAGAAAACTGATGCACCTTAACCGGATG < 41bp 1 0.514166852117783 1 0.437645673751831 experiment 0.971666295764434 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151689 chr5:179151700 stopgain 0.955 1 32 hm5C_associated_SNPs_15317 0 0 1 0 2 CANX chr5:179151784 5'GT 179151784 Upstream 85bp
chr5 179151700 179151700 1 + C T BLCA 179151698 + 179151678 179151718 41 GTATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAG GTATAAGAAAACTGATGCACCTTAACCGGATGTGAAGGAAG < 41bp 1 0.259449328453243 1 0.198771446943283 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151698 chr5:179151700 stopgain 0.955 1 23 hm5C_associated_SNPs_15318 0 0 1 0 2 CANX chr5:179151658 3'AG 179151658 Downstream 43bp
chr5 179151700 179151700 1 + C T BLCA 179151698 + 179151678 179151718 41 GTATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAG GTATAAGAAAACTGATGCACCTTAACCGGATGTGAAGGAAG < 41bp 1 0.259449328453243 1 0.198771446943283 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151698 chr5:179151700 stopgain 0.955 1 23 hm5C_associated_SNPs_15318 0 0 1 0 2 CANX chr5:179151784 5'GT 179151784 Upstream 85bp
chr5 179151700 179151700 1 + C T BLCA 179151704 + 179151684 179151724 41 GAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAGGAAG GAAAACTGATGCACCTTAACCGGATGTGAAGGAAGAGGAAG < 41bp 1 0.58844160158208 1 0.562223315238953 experiment 0.823116796835841 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151704 chr5:179151700 stopgain 0.955 1 17 hm5C_associated_SNPs_15319 0 0 1 0 2 CANX chr5:179151658 3'AG 179151658 Downstream 43bp
chr5 179151700 179151700 1 + C T BLCA 179151704 + 179151684 179151724 41 GAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAGGAAG GAAAACTGATGCACCTTAACCGGATGTGAAGGAAGAGGAAG < 41bp 1 0.58844160158208 1 0.562223315238953 experiment 0.823116796835841 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151704 chr5:179151700 stopgain 0.955 1 17 hm5C_associated_SNPs_15319 0 0 1 0 2 CANX chr5:179151784 5'GT 179151784 Upstream 85bp
chr19 34949727 34949727 1 + A G BLCA 34949745 + 34949725 34949765 41 GCACTGGATCCTCCCAACCCCAATTGTTATGTATGTGCCAG GCGCTGGATCCTCCCAACCCCAATTGTTATGTATGTGCCAG < 41bp 1 0.333380797883467 1 0.0962076783180237 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBA2 ENSG00000126261 CDS Human protein_coding chr19:34949745 chr19:34949727 synonymous SNV . 0 3 hm5C_associated_SNPs_15320 0 0 1 0 1 UBA2 chr19:34949674 3'AG 34949674 Downstream 54bp
chr14 21967260 21967260 1 - G T BLCA 21967278 - 21967258 21967298 41 TAGTTTTTATTTCCTAGGTTCGTTCCACCAGTCATAAACCA TAGTTTTTATTTCCTAGGTTCGTTCCACCAGTCATAAAACA < 41bp 1 0.0160893679870423 1 0.0651327669620514 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control METTL3 ENSG00000165819 CDS Human protein_coding chr14:21967278 chr14:21967260 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_15321 0 0 1 0 2 METTL3 chr14:21967169 5'GT 21967169 Upstream 92bp
chr14 21967260 21967260 1 - G T BLCA 21967278 - 21967258 21967298 41 TAGTTTTTATTTCCTAGGTTCGTTCCACCAGTCATAAACCA TAGTTTTTATTTCCTAGGTTCGTTCCACCAGTCATAAAACA < 41bp 1 0.0160893679870423 1 0.0651327669620514 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control METTL3 ENSG00000165819 CDS Human protein_coding chr14:21967278 chr14:21967260 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_15321 0 0 1 0 2 METTL3 chr14:21967281 3'AG 21967281 Downstream 22bp
chrX 47518321 47518321 1 - C T BLCA 47518340 - 47518320 47518360 41 GGTCTTCCCCCTCCCCACTCCCCAGGAGCCCATCATGGCGA GGTCTTCCCCCTCCCCACTCCCCAGGAGCCCATCATGGCAA < 41bp 1 0.481577286649212 1 0.589560866355896 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UXT ENSG00000126756 CDS Human protein_coding chrX:47518340 chrX:47518321 synonymous SNV . 0 40 hm5C_associated_SNPs_15322 0 0 1 0 2 UXT chrX:47518229 5'GT 47518229 Upstream 93bp
chrX 47518321 47518321 1 - C T BLCA 47518340 - 47518320 47518360 41 GGTCTTCCCCCTCCCCACTCCCCAGGAGCCCATCATGGCGA GGTCTTCCCCCTCCCCACTCCCCAGGAGCCCATCATGGCAA < 41bp 1 0.481577286649212 1 0.589560866355896 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UXT ENSG00000126756 CDS Human protein_coding chrX:47518340 chrX:47518321 synonymous SNV . 0 40 hm5C_associated_SNPs_15322 0 0 1 0 2 UXT chrX:47518335 3'AG 47518335 Downstream 15bp
chr10 76990693 76990693 1 + G A BLCA 76990674 + 76990654 76990694 41 AGGTGTGAAGCTTACACTCTCTGCTCTGGTAGATGGGAAGA AGGTGTGAAGCTTACACTCTCTGCTCTGGTAGATGGGAAAA < 41bp 1 0.482723210274808 1 0.151665836572647 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VDAC2 ENSG00000165637 CDS Human protein_coding chr10:76990674 chr10:76990693 synonymous SNV . 0 40 hm5C_associated_SNPs_15323 0 0 1 0 1 VDAC2 chr10:76990656 3'AG 76990656 Downstream 38bp
chr10 76990693 76990693 1 + G A BLCA 76990677 + 76990657 76990697 41 TGTGAAGCTTACACTCTCTGCTCTGGTAGATGGGAAGAGCA TGTGAAGCTTACACTCTCTGCTCTGGTAGATGGGAAAAGCA < 41bp 1 0.27595639428363 1 0.143064439296722 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VDAC2 ENSG00000165637 CDS Human protein_coding chr10:76990677 chr10:76990693 synonymous SNV . 0 37 hm5C_associated_SNPs_15324 0 0 1 0 1 VDAC2 chr10:76990656 3'AG 76990656 Downstream 38bp
chr10 76990693 76990693 1 + G A BLCA 76990679 + 76990659 76990699 41 TGAAGCTTACACTCTCTGCTCTGGTAGATGGGAAGAGCATT TGAAGCTTACACTCTCTGCTCTGGTAGATGGGAAAAGCATT < 41bp 1 0.401981786126161 1 0.478652775287628 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VDAC2 ENSG00000165637 CDS Human protein_coding chr10:76990679 chr10:76990693 synonymous SNV . 0 35 hm5C_associated_SNPs_15325 0 0 1 0 1 VDAC2 chr10:76990656 3'AG 76990656 Downstream 38bp
chr2 219538626 219538626 1 + G A BLCA 219538635 + 219538615 219538655 41 CAGACTATGCTGAGGGAGAGCTCTTTCAGATCCTAGAAGAT CAGACTATGCTAAGGGAGAGCTCTTTCAGATCCTAGAAGAT < 41bp 1 0.0770199544347067 1 0.110742151737213 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STK36 ENSG00000163482 CDS Human protein_coding chr2:219538635 chr2:219538626 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_15326 0 0 0 0 2 STK36 chr2:219538602 3'AG 219538602 Downstream 25bp
chr2 219538626 219538626 1 + G A BLCA 219538635 + 219538615 219538655 41 CAGACTATGCTGAGGGAGAGCTCTTTCAGATCCTAGAAGAT CAGACTATGCTAAGGGAGAGCTCTTTCAGATCCTAGAAGAT < 41bp 1 0.0770199544347067 1 0.110742151737213 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STK36 ENSG00000163482 CDS Human protein_coding chr2:219538635 chr2:219538626 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_15326 0 0 0 0 2 STK36 chr2:219538679 5'GT 219538679 Upstream 54bp
chrX 10155598 10155598 1 + G T BLCA 10155590 + 10155570 10155610 41 AAGGAGTCCATATGGGAGTTCATCAAGAGCCTGCTGGATGC AAGGAGTCCATATGGGAGTTCATCAAGATCCTGCTGGATGC < 41bp 1 0.31724477629929 1 0.140746146440506 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10155590 chrX:10155598 nonsynonymous SNV 0.658 3 29 hm5C_associated_SNPs_15329 0 0 1 0 2 CLCN4 chrX:10155555 3'AG 10155555 Downstream 44bp
chrX 10155598 10155598 1 + G T BLCA 10155590 + 10155570 10155610 41 AAGGAGTCCATATGGGAGTTCATCAAGAGCCTGCTGGATGC AAGGAGTCCATATGGGAGTTCATCAAGATCCTGCTGGATGC < 41bp 1 0.31724477629929 1 0.140746146440506 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10155590 chrX:10155598 nonsynonymous SNV 0.658 3 29 hm5C_associated_SNPs_15329 0 0 1 0 2 CLCN4 chrX:10155654 5'GT 10155654 Upstream 57bp
chr11 61719346 61719346 1 + G A BLCA 61719365 + 61719345 61719385 41 TGCTGGCGGGGCAGCATCTACAAGCTGCTATATGGCGAGTT TACTGGCGGGGCAGCATCTACAAGCTGCTATATGGCGAGTT < 41bp 1 0.51321944132877 1 0.519916415214539 experiment 0.973561117342459 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61719365 chr11:61719346 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_15330 0 0 0 0 1 BEST1 chr11:61719430 5'GT 61719430 Upstream 85bp
chr1 156255359 156255359 1 + C T BLCA 156255378 + 156255358 156255398 41 CCGAAGACGATGCCAACCTGCTGCCTGAGAAAGCGGCCCGT CTGAAGACGATGCCAACCTGCTGCCTGAGAAAGCGGCCCGT < 41bp 1 0.351550613289564 1 0.105183690786362 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM79 ENSG00000163472 CDS Human protein_coding chr1:156255378 chr1:156255359 synonymous SNV . 0 2 hm5C_associated_SNPs_15332 0 0 0 0 1 TMEM79 chr1:156255316 3'AG 156255316 Downstream 44bp
chr2 27448053 27448053 1 + G A BLCA 27448037 + 27448017 27448057 41 TTGAGCTGACCGAGGATCGACGGGCCTTTGCTGCCAGAATG TTGAGCTGACCGAGGATCGACGGGCCTTTGCTGCCAAAATG < 41bp 1 0.458128894025122 1 0.625492811203003 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27448037 chr2:27448053 nonsynonymous SNV 0.766 2 37 hm5C_associated_SNPs_15333 0 0 1 0 1 CAD chr2:27448111 5'GT 27448111 Upstream 59bp
chr2 27448053 27448053 1 + G A BLCA 27448041 + 27448021 27448061 41 GCTGACCGAGGATCGACGGGCCTTTGCTGCCAGAATGGCAG GCTGACCGAGGATCGACGGGCCTTTGCTGCCAAAATGGCAG < 41bp 1 0.0136110475263984 1 0.0868426263332367 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27448041 chr2:27448053 nonsynonymous SNV 0.766 2 33 hm5C_associated_SNPs_15334 0 0 1 0 1 CAD chr2:27448111 5'GT 27448111 Upstream 59bp
chr2 27448053 27448053 1 + G A BLCA 27448047 + 27448027 27448067 41 CGAGGATCGACGGGCCTTTGCTGCCAGAATGGCAGAGATCG CGAGGATCGACGGGCCTTTGCTGCCAAAATGGCAGAGATCG < 41bp 1 0.331147798015938 1 0.0584559440612793 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27448047 chr2:27448053 nonsynonymous SNV 0.766 2 27 hm5C_associated_SNPs_15335 0 0 1 0 1 CAD chr2:27448111 5'GT 27448111 Upstream 59bp
chr14 103805628 103805628 1 + G C BLCA 103805638 + 103805618 103805658 41 TTAATGAGAAGATTAGAGAACAGATTAAGAAATACAGGCGC TTAATGAGAACATTAGAGAACAGATTAAGAAATACAGGCGC < 41bp 1 0.386775913354449 1 0.178159236907959 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103805638 chr14:103805628 nonsynonymous SNV 0.980 2 11 hm5C_associated_SNPs_15336 0 0 1 0 1 EIF5 chr14:103805670 5'GT 103805670 Upstream 43bp
chr16 15788066 15788066 1 + C T BLCA 15788047 + 15788027 15788067 41 GACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCG GACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCTG < 41bp 1 0.200146665143547 1 0.0574577152729034 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDE1 ENSG00000072864 CDS Human protein_coding chr16:15788047 chr16:15788066 nonsynonymous SNV 0.729 3 40 hm5C_associated_SNPs_15337 0 0 1 0 2 NDE1 chr16:15788022 3'AG 15788022 Downstream 45bp
chr16 15788066 15788066 1 + C T BLCA 15788047 + 15788027 15788067 41 GACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCG GACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCTG < 41bp 1 0.200146665143547 1 0.0574577152729034 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDE1 ENSG00000072864 CDS Human protein_coding chr16:15788047 chr16:15788066 nonsynonymous SNV 0.729 3 40 hm5C_associated_SNPs_15337 0 0 1 0 2 NDE1 chr16:15788113 5'GT 15788113 Upstream 48bp
chr19 1255046 1255046 1 + C G BLCA 1255058 + 1255038 1255078 41 GGTCTTCTCAGGGACCTTCTCTGGTAGGTGTCACAGCACAT GGTCTTCTGAGGGACCTTCTCTGGTAGGTGTCACAGCACAT < 41bp 1 0.732855894765651 1 0.465472757816315 experiment 0.534288210468699 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MIDN ENSG00000167470 CDS Human protein_coding chr19:1255058 chr19:1255046 stopgain 1.000 1 9 hm5C_associated_SNPs_15338 0 0 1 0 1 MIDN chr19:1255060 5'GT 1255060 Upstream 15bp
chr11 67052379 67052379 1 + C G BLCA 67052374 + 67052354 67052394 41 ACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAG ACATGTCCAAGATGGGCAACCCCTTGCTGACCCAGTGGCAG < 41bp 1 0.085854795914177 1 0.119154185056686 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052374 chr11:67052379 nonsynonymous SNV 0.994 2 26 hm5C_associated_SNPs_15339 0 0 1 0 2 GRK2 chr11:67052318 3'AG 67052318 Downstream 62bp
chr11 67052379 67052379 1 + C G BLCA 67052374 + 67052354 67052394 41 ACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAG ACATGTCCAAGATGGGCAACCCCTTGCTGACCCAGTGGCAG < 41bp 1 0.085854795914177 1 0.119154185056686 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052374 chr11:67052379 nonsynonymous SNV 0.994 2 26 hm5C_associated_SNPs_15339 0 0 1 0 2 GRK2 chr11:67052454 5'GT 67052454 Upstream 76bp
chr11 67052379 67052379 1 + C G BLCA 67052376 + 67052356 67052396 41 ATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCG ATGTCCAAGATGGGCAACCCCTTGCTGACCCAGTGGCAGCG < 41bp 1 0.293701951865063 1 0.173966079950333 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052376 chr11:67052379 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_15340 0 0 1 0 2 GRK2 chr11:67052318 3'AG 67052318 Downstream 62bp
chr11 67052379 67052379 1 + C G BLCA 67052376 + 67052356 67052396 41 ATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCG ATGTCCAAGATGGGCAACCCCTTGCTGACCCAGTGGCAGCG < 41bp 1 0.293701951865063 1 0.173966079950333 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052376 chr11:67052379 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_15340 0 0 1 0 2 GRK2 chr11:67052454 5'GT 67052454 Upstream 76bp
chr5 17275374 17275374 1 + G A BLCA 17275370 + 17275350 17275390 41 AAGAAGGGCTACAATGTGAACGACGAGAAAGCCAAGGAGAA AAGAAGGGCTACAATGTGAACGACAAGAAAGCCAAGGAGAA < 41bp 1 0.686987396229925 1 0.171583443880081 experiment 0.626025207540151 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275370 chr5:17275374 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_15341 0 0 1 0 1 BASP1 chr5:17275317 3'AG 17275317 Downstream 58bp
chr5 17275374 17275374 1 + G A BLCA 17275373 + 17275353 17275393 41 AAGGGCTACAATGTGAACGACGAGAAAGCCAAGGAGAAAGA AAGGGCTACAATGTGAACGACAAGAAAGCCAAGGAGAAAGA < 41bp 1 0.680755293184001 1 0.164179027080536 experiment 0.638489413631999 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275373 chr5:17275374 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_15342 0 0 1 0 1 BASP1 chr5:17275317 3'AG 17275317 Downstream 58bp
chr5 17275374 17275374 1 + G A BLCA 17275381 + 17275361 17275401 41 CAATGTGAACGACGAGAAAGCCAAGGAGAAAGACAAGAAGG CAATGTGAACGACAAGAAAGCCAAGGAGAAAGACAAGAAGG < 41bp 1 0.33037195593213 1 0.413287550210953 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275381 chr5:17275374 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_15343 0 0 1 0 1 BASP1 chr5:17275317 3'AG 17275317 Downstream 58bp
chr19 59057194 59057194 1 + C T BLCA 59057191 + 59057171 59057211 41 ACTGTGTGGAGTGCTCGGAGCCTCTGTGTGAGACCTGTGTA ACTGTGTGGAGTGCTCGGAGCCTTTGTGTGAGACCTGTGTA < 41bp 1 0.0443475780947605 1 0.0429597198963165 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59057191 chr19:59057194 synonymous SNV . 0 24 hm5C_associated_SNPs_15344 0 0 1 0 2 TRIM28 chr19:59057131 3'AG 59057131 Downstream 64bp
chr19 59057194 59057194 1 + C T BLCA 59057191 + 59057171 59057211 41 ACTGTGTGGAGTGCTCGGAGCCTCTGTGTGAGACCTGTGTA ACTGTGTGGAGTGCTCGGAGCCTTTGTGTGAGACCTGTGTA < 41bp 1 0.0443475780947605 1 0.0429597198963165 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59057191 chr19:59057194 synonymous SNV . 0 24 hm5C_associated_SNPs_15344 0 0 1 0 2 TRIM28 chr19:59057263 5'GT 59057263 Upstream 70bp
chr19 59057194 59057194 1 + C T BLCA 59057205 + 59057185 59057225 41 TCGGAGCCTCTGTGTGAGACCTGTGTAGAGGCGCACCAGCG TCGGAGCCTTTGTGTGAGACCTGTGTAGAGGCGCACCAGCG < 41bp 1 0.419839962992058 1 0.109072506427765 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59057205 chr19:59057194 synonymous SNV . 0 10 hm5C_associated_SNPs_15345 0 0 1 0 2 TRIM28 chr19:59057131 3'AG 59057131 Downstream 64bp
chr19 59057194 59057194 1 + C T BLCA 59057205 + 59057185 59057225 41 TCGGAGCCTCTGTGTGAGACCTGTGTAGAGGCGCACCAGCG TCGGAGCCTTTGTGTGAGACCTGTGTAGAGGCGCACCAGCG < 41bp 1 0.419839962992058 1 0.109072506427765 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59057205 chr19:59057194 synonymous SNV . 0 10 hm5C_associated_SNPs_15345 0 0 1 0 2 TRIM28 chr19:59057263 5'GT 59057263 Upstream 70bp
chr16 53504333 53504333 1 + G C BLCA 53504331 + 53504311 53504351 41 TGGAGGGATAACATTCTTCCCTGTCCAAGTCAATGTTGGGG TGGAGGGATAACATTCTTCCCTCTCCAAGTCAATGTTGGGG < 41bp 1 0.0992368116280943 1 0.236796528100967 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RBL2 ENSG00000103479 CDS Human protein_coding chr16:53504331 chr16:53504333 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_15347 0 0 1 0 1 RBL2 chr16:53504295 3'AG 53504295 Downstream 39bp
chr10 126505169 126505169 1 + C G BLCA 126505159 + 126505139 126505179 41 TTACAGAAATCCATAACCATCAGCCTTGTTCAAAACTTTTT TTACAGAAATCCATAACCATCAGCCTTGTTGAAAACTTTTT < 41bp 1 0.25590210512678 1 0.118677794933319 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126505159 chr10:126505169 stopgain 1.000 0 31 hm5C_associated_SNPs_15348 0 0 1 0 2 ABRAXAS2 chr10:126505145 3'AG 126505145 Downstream 25bp
chr10 126505169 126505169 1 + C G BLCA 126505159 + 126505139 126505179 41 TTACAGAAATCCATAACCATCAGCCTTGTTCAAAACTTTTT TTACAGAAATCCATAACCATCAGCCTTGTTGAAAACTTTTT < 41bp 1 0.25590210512678 1 0.118677794933319 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126505159 chr10:126505169 stopgain 1.000 0 31 hm5C_associated_SNPs_15348 0 0 1 0 2 ABRAXAS2 chr10:126505181 5'GT 126505181 Upstream 13bp
chr4 123192861 123192861 1 + G A BLCA 123192859 + 123192839 123192879 41 AGGAATATTGGAAAAGTCTTCAGAAACATTTGGACCAGCAG AGGAATATTGGAAAAGTCTTCAAAAACATTTGGACCAGCAG < 41bp 1 0.183590637730513 1 0.648221492767334 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123192859 chr4:123192861 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_15349 0 0 1 0 1 KIAA1109 chr4:123192879 5'GT 123192879 Upstream 19bp
chr14 90867659 90867659 1 + A G BLCA 90867648 + 90867628 90867668 41 TGATAAAGATGGCGATGGCACCATCACAACAAAGGAACTTG TGATAAAGATGGCGATGGCACCATCACAACAGAGGAACTTG < 41bp 1 0.0729257129826134 1 0.0672257840633392 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CALM1 ENSG00000198668 CDS Human protein_coding chr14:90867648 chr14:90867659 nonsynonymous SNV 0.998 1 32 hm5C_associated_SNPs_15350 0 0 1 0 2 CALM1 chr14:90867603 3'AG 90867603 Downstream 57bp
chr14 90867659 90867659 1 + A G BLCA 90867648 + 90867628 90867668 41 TGATAAAGATGGCGATGGCACCATCACAACAAAGGAACTTG TGATAAAGATGGCGATGGCACCATCACAACAGAGGAACTTG < 41bp 1 0.0729257129826134 1 0.0672257840633392 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CALM1 ENSG00000198668 CDS Human protein_coding chr14:90867648 chr14:90867659 nonsynonymous SNV 0.998 1 32 hm5C_associated_SNPs_15350 0 0 1 0 2 CALM1 chr14:90867746 5'GT 90867746 Upstream 88bp
chr14 90867659 90867659 1 + A G BLCA 90867649 + 90867629 90867669 41 GATAAAGATGGCGATGGCACCATCACAACAAAGGAACTTGG GATAAAGATGGCGATGGCACCATCACAACAGAGGAACTTGG < 41bp 1 0.463223884973596 1 0.319206357002258 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CALM1 ENSG00000198668 CDS Human protein_coding chr14:90867649 chr14:90867659 nonsynonymous SNV 0.998 1 31 hm5C_associated_SNPs_15351 0 0 1 0 2 CALM1 chr14:90867603 3'AG 90867603 Downstream 57bp
chr14 90867659 90867659 1 + A G BLCA 90867649 + 90867629 90867669 41 GATAAAGATGGCGATGGCACCATCACAACAAAGGAACTTGG GATAAAGATGGCGATGGCACCATCACAACAGAGGAACTTGG < 41bp 1 0.463223884973596 1 0.319206357002258 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CALM1 ENSG00000198668 CDS Human protein_coding chr14:90867649 chr14:90867659 nonsynonymous SNV 0.998 1 31 hm5C_associated_SNPs_15351 0 0 1 0 2 CALM1 chr14:90867746 5'GT 90867746 Upstream 88bp
chr11 93530718 93530718 1 + G C BLCA 93530714 + 93530694 93530734 41 TTGTTAGTTTCATAAACAGACCTTGAGTTCCATCATGATGC TTGTTAGTTTCATAAACAGACCTTCAGTTCCATCATGATGC < 41bp 1 0.00922450799860568 1 0.0126011967658997 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MED17 ENSG00000042429 CDS Human protein_coding chr11:93530714 chr11:93530718 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_15353 0 0 0 0 1 MED17 chr11:93530701 3'AG 93530701 Downstream 18bp
chr7 73636008 73636008 1 + C T BLCA 73636001 + 73635981 73636021 41 TGGAGTATTACAACTGGGGGCGGTTCTCGAAGCCCCCAGAA TGGAGTATTACAACTGGGGGCGGTTCTTGAAGCCCCCAGAA < 41bp 1 0.182828114371594 1 0.254678398370743 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636001 chr7:73636008 nonsynonymous SNV 0.001 0 28 hm5C_associated_SNPs_15354 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 42bp
chr7 73636008 73636008 1 + C T BLCA 73636001 + 73635981 73636021 41 TGGAGTATTACAACTGGGGGCGGTTCTCGAAGCCCCCAGAA TGGAGTATTACAACTGGGGGCGGTTCTTGAAGCCCCCAGAA < 41bp 1 0.182828114371594 1 0.254678398370743 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636001 chr7:73636008 nonsynonymous SNV 0.001 0 28 hm5C_associated_SNPs_15354 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 15bp
chr7 73636008 73636008 1 + C T BLCA 73636013 + 73635993 73636033 41 ACTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAG ACTGGGGGCGGTTCTTGAAGCCCCCAGAAGGTGAGGCGAAG < 41bp 1 0.146733067858485 1 0.138333201408386 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636013 chr7:73636008 nonsynonymous SNV 0.001 0 16 hm5C_associated_SNPs_15355 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 42bp
chr7 73636008 73636008 1 + C T BLCA 73636013 + 73635993 73636033 41 ACTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAG ACTGGGGGCGGTTCTTGAAGCCCCCAGAAGGTGAGGCGAAG < 41bp 1 0.146733067858485 1 0.138333201408386 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636013 chr7:73636008 nonsynonymous SNV 0.001 0 16 hm5C_associated_SNPs_15355 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 15bp
chr7 73636008 73636008 1 + C T BLCA 73636014 + 73635994 73636034 41 CTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGG CTGGGGGCGGTTCTTGAAGCCCCCAGAAGGTGAGGCGAAGG < 41bp 1 0.448317508330722 1 0.175954401493073 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636014 chr7:73636008 nonsynonymous SNV 0.001 0 15 hm5C_associated_SNPs_15356 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 42bp
chr7 73636008 73636008 1 + C T BLCA 73636014 + 73635994 73636034 41 CTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGG CTGGGGGCGGTTCTTGAAGCCCCCAGAAGGTGAGGCGAAGG < 41bp 1 0.448317508330722 1 0.175954401493073 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636014 chr7:73636008 nonsynonymous SNV 0.001 0 15 hm5C_associated_SNPs_15356 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 15bp
chr7 73636008 73636008 1 + C T BLCA 73636015 + 73635995 73636035 41 TGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGA TGGGGGCGGTTCTTGAAGCCCCCAGAAGGTGAGGCGAAGGA < 41bp 1 0.223349377208368 1 0.308219522237778 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636015 chr7:73636008 nonsynonymous SNV 0.001 0 14 hm5C_associated_SNPs_15357 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 42bp
chr7 73636008 73636008 1 + C T BLCA 73636015 + 73635995 73636035 41 TGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGA TGGGGGCGGTTCTTGAAGCCCCCAGAAGGTGAGGCGAAGGA < 41bp 1 0.223349377208368 1 0.308219522237778 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636015 chr7:73636008 nonsynonymous SNV 0.001 0 14 hm5C_associated_SNPs_15357 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 15bp
chr7 73636008 73636008 1 + C T BLCA 73636016 + 73635996 73636036 41 GGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGAC GGGGGCGGTTCTTGAAGCCCCCAGAAGGTGAGGCGAAGGAC < 41bp 1 0.483689266611356 1 0.32285749912262 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636016 chr7:73636008 nonsynonymous SNV 0.001 0 13 hm5C_associated_SNPs_15358 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 42bp
chr7 73636008 73636008 1 + C T BLCA 73636016 + 73635996 73636036 41 GGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGAC GGGGGCGGTTCTTGAAGCCCCCAGAAGGTGAGGCGAAGGAC < 41bp 1 0.483689266611356 1 0.32285749912262 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636016 chr7:73636008 nonsynonymous SNV 0.001 0 13 hm5C_associated_SNPs_15358 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 15bp
chr7 73636008 73636008 1 + C T BLCA 73636017 + 73635997 73636037 41 GGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGACA GGGGCGGTTCTTGAAGCCCCCAGAAGGTGAGGCGAAGGACA < 41bp 1 0.607811044026918 1 0.832887291908264 experiment 0.784377911946163 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636017 chr7:73636008 nonsynonymous SNV 0.001 0 12 hm5C_associated_SNPs_15359 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 42bp
chr7 73636008 73636008 1 + C T BLCA 73636017 + 73635997 73636037 41 GGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGACA GGGGCGGTTCTTGAAGCCCCCAGAAGGTGAGGCGAAGGACA < 41bp 1 0.607811044026918 1 0.832887291908264 experiment 0.784377911946163 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636017 chr7:73636008 nonsynonymous SNV 0.001 0 12 hm5C_associated_SNPs_15359 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 15bp
chr3 52245381 52245381 1 + C T BLCA 52245361 + 52245341 52245381 41 GTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGGCTTC GTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGGCTTT < 41bp 1 0.275512905262052 1 0.368093281984329 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245361 chr3:52245381 synonymous SNV . 0 41 hm5C_associated_SNPs_15360 0 0 1 0 1 ALAS1 chr3:52245299 3'AG 52245299 Downstream 83bp
chr5 33459922 33459922 1 + G C BLCA 33459929 + 33459909 33459949 41 CCTTTGAGGTGGAGAAGGAGCTGTTTGCCCTGAAACCCATG CCTTTGAGGTGGACAAGGAGCTGTTTGCCCTGAAACCCATG < 41bp 1 0.455958880710671 1 0.09645876288414 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33459929 chr5:33459922 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_15361 0 0 1 0 1 TARS chr5:33459966 5'GT 33459966 Upstream 45bp
chr3 66430871 66430871 1 - G T BLCA 66430873 - 66430853 66430893 41 GCAAGGTTGTATCACCCGGACTCCACAGAGCTACAGCCTGC GCAAGGTTGTATCACCCGGACTACACAGAGCTACAGCCTGC < 41bp 1 0.470777204077535 1 0.0648505389690399 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430873 chr3:66430871 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_15362 0 0 1 0 1 LRIG1 chr3:66430913 3'AG 66430913 Downstream 43bp
chr8 145138146 145138146 1 + C T BLCA 145138162 + 145138142 145138182 41 TTTGCGGGCGGAGACCGTGCCCGGGCTTTTGCCCGGGACTT TTTGTGGGCGGAGACCGTGCCCGGGCTTTTGCCCGGGACTT < 41bp 1 0.674822032744253 1 0.555763959884644 experiment 0.650355934511495 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145138162 chr8:145138146 nonsynonymous SNV 0.198 0 5 hm5C_associated_SNPs_15364 0 0 1 0 1 GPAA1 chr8:145138206 5'GT 145138206 Upstream 61bp
chr14 102476256 102476256 1 + G C BLCA 102476275 + 102476255 102476295 41 TGAACCCTGGCTACGCGGGCCGGTCTAACCTTCCTGACAAC TCAACCCTGGCTACGCGGGCCGGTCTAACCTTCCTGACAAC < 41bp 1 0.0436781259843268 1 0.345095813274384 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102476275 chr14:102476256 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_15365 0 0 1 0 1 DYNC1H1 chr14:102476180 3'AG 102476180 Downstream 77bp
chr19 7918186 7918186 1 + G C BLCA 7918189 + 7918169 7918209 41 GAGTACGCAGCCATGAAGAGCAAGGAGATGGAGGAGCAGAT GAGTACGCAGCCATGAACAGCAAGGAGATGGAGGAGCAGAT < 41bp 1 0.306357993588591 1 0.458130210638046 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EVI5L ENSG00000142459 CDS Human protein_coding chr19:7918189 chr19:7918186 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_15366 0 0 0 0 2 EVI5L chr19:7918159 3'AG 7918159 Downstream 28bp
chr19 7918186 7918186 1 + G C BLCA 7918189 + 7918169 7918209 41 GAGTACGCAGCCATGAAGAGCAAGGAGATGGAGGAGCAGAT GAGTACGCAGCCATGAACAGCAAGGAGATGGAGGAGCAGAT < 41bp 1 0.306357993588591 1 0.458130210638046 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EVI5L ENSG00000142459 CDS Human protein_coding chr19:7918189 chr19:7918186 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_15366 0 0 0 0 2 EVI5L chr19:7918219 5'GT 7918219 Upstream 34bp
chr1 39910468 39910468 1 + G T BLCA 39910457 + 39910437 39910477 41 AGACAGAACAGAGTGTAGCACTTTTGGAGCAGAAGTGGCAT AGACAGAACAGAGTGTAGCACTTTTGGAGCATAAGTGGCAT < 41bp 1 0.0673769615999221 1 0.0800431370735168 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39910457 chr1:39910468 nonsynonymous SNV 0.998 3 32 hm5C_associated_SNPs_15367 0 0 1 0 1 MACF1 chr1:39910507 5'GT 39910507 Upstream 40bp
chr1 39910468 39910468 1 + G T BLCA 39910466 + 39910446 39910486 41 AGAGTGTAGCACTTTTGGAGCAGAAGTGGCATGTGGTCAGC AGAGTGTAGCACTTTTGGAGCATAAGTGGCATGTGGTCAGC < 41bp 1 0.139325873240438 1 0.0662060379981995 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39910466 chr1:39910468 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_15368 0 0 1 0 1 MACF1 chr1:39910507 5'GT 39910507 Upstream 40bp
chr1 39910468 39910468 1 + G T BLCA 39910475 + 39910455 39910495 41 CACTTTTGGAGCAGAAGTGGCATGTGGTCAGCAGTAAGATG CACTTTTGGAGCATAAGTGGCATGTGGTCAGCAGTAAGATG < 41bp 1 0.0865121493382404 1 0.0697435438632965 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39910475 chr1:39910468 nonsynonymous SNV 0.998 3 14 hm5C_associated_SNPs_15369 0 0 1 0 1 MACF1 chr1:39910507 5'GT 39910507 Upstream 40bp
chr1 39910468 39910468 1 + G T BLCA 39910486 + 39910466 39910506 41 CAGAAGTGGCATGTGGTCAGCAGTAAGATGGAAGAAAGAAA CATAAGTGGCATGTGGTCAGCAGTAAGATGGAAGAAAGAAA < 41bp 1 0.116331518230915 1 0.452091962099075 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39910486 chr1:39910468 nonsynonymous SNV 0.998 3 3 hm5C_associated_SNPs_15370 0 0 1 0 1 MACF1 chr1:39910507 5'GT 39910507 Upstream 40bp
chr4 1932436 1932436 1 + G A BLCA 1932419 + 1932399 1932439 41 TGCTCAGGTCACAGTGGAGTCTGCTGAGTGAGAAGCAGAGA TGCTCAGGTCACAGTGGAGTCTGCTGAGTGAGAAGCAAAGA < 41bp 1 0.44627935698838 1 0.201279312372208 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NSD2 ENSG00000109685 CDS Human protein_coding chr4:1932419 chr4:1932436 synonymous SNV . 0 38 hm5C_associated_SNPs_15373 0 0 1 0 2 NSD2 chr4:1932353 3'AG 1932353 Downstream 84bp
chr4 1932436 1932436 1 + G A BLCA 1932419 + 1932399 1932439 41 TGCTCAGGTCACAGTGGAGTCTGCTGAGTGAGAAGCAGAGA TGCTCAGGTCACAGTGGAGTCTGCTGAGTGAGAAGCAAAGA < 41bp 1 0.44627935698838 1 0.201279312372208 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NSD2 ENSG00000109685 CDS Human protein_coding chr4:1932419 chr4:1932436 synonymous SNV . 0 38 hm5C_associated_SNPs_15373 0 0 1 0 2 NSD2 chr4:1932497 5'GT 1932497 Upstream 62bp
chr17 55083551 55083551 1 + G A BLCA 55083541 + 55083521 55083561 41 TGTTTTTTTCTAGGTTCCTTCTGACCAAGGGGACATGGCTC TGTTTTTTTCTAGGTTCCTTCTGACCAAGGAGACATGGCTC < 41bp 1 0.313307416920984 1 0.721314072608948 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55083541 chr17:55083551 synonymous SNV . 0 31 hm5C_associated_SNPs_15375 0 0 1 0 1 SCPEP1 chr17:55083534 3'AG 55083534 Downstream 18bp
chr7 156746908 156746908 1 + C T BLCA 156746911 + 156746891 156746931 41 GCTCTCATGGGTGCCTGCGTCACTGCCTCGGCCATGCCCAG GCTCTCATGGGTGCCTGTGTCACTGCCTCGGCCATGCCCAG < 41bp 1 0.673559924704545 1 0.449502021074295 experiment 0.65288015059091 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NOM1 ENSG00000146909 CDS Human protein_coding chr7:156746911 chr7:156746908 synonymous SNV . 0 18 hm5C_associated_SNPs_15376 0 0 1 0 1 NOM1 chr7:156746992 5'GT 156746992 Upstream 85bp
chrX 106046148 106046148 1 + C T BLCA 106046129 + 106046109 106046149 41 TTCTGAAAAATGCGCTGAAGCTGTGGCTGATGGAAAGGTCC TTCTGAAAAATGCGCTGAAGCTGTGGCTGATGGAAAGGTTC < 41bp 1 0.566550913808479 1 0.20409694314003 experiment 0.866898172383042 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TBC1D8B ENSG00000133138 CDS Human protein_coding chrX:106046129 chrX:106046148 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_15377 0 0 0 0 1 TBC1D8B chrX:106046213 5'GT 106046213 Upstream 66bp
chr22 29533341 29533341 1 + G A BLCA 29533346 + 29533326 29533366 41 ACAGCTCTCGTGGGCGCCTGCGGTGGGAACTACTCAGCCAT ACAGCTCTCGTGGGCACCTGCGGTGGGAACTACTCAGCCAT < 41bp 1 0.507760788596319 1 0.735467553138733 experiment 0.984478422807361 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KREMEN1 ENSG00000183762 CDS Human protein_coding chr22:29533346 chr22:29533341 nonsynonymous SNV 0.910 4 16 hm5C_associated_SNPs_15379 0 0 0 0 1 KREMEN1 chr22:29533330 3'AG 29533330 Downstream 12bp
chr10 12148393 12148393 1 + G C BLCA 12148373 + 12148353 12148393 41 TTCAATGGTGCCCAGATCATCTTTGACACATTCATCTCTGG TTCAATGGTGCCCAGATCATCTTTGACACATTCATCTCTGC < 41bp 1 0.168407985528842 1 0.155503302812576 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12148373 chr10:12148393 nonsynonymous SNV 0.998 3 41 hm5C_associated_SNPs_15381 0 0 0 0 1 DHTKD1 chr10:12148395 5'GT 12148395 Upstream 3bp
chr11 129991605 129991605 1 + C G BLCA 129991624 + 129991604 129991644 41 TCAGACAAAGATTATTGGATCTGTGTCAAAAGAAGAGGAAG TGAGACAAAGATTATTGGATCTGTGTCAAAAGAAGAGGAAG < 41bp 1 0.258820372315818 1 0.147396355867386 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout APLP2 ENSG00000084234 CDS Human protein_coding chr11:129991624 chr11:129991605 nonsynonymous SNV 0.918 1 2 hm5C_associated_SNPs_15382 0 0 1 0 1 APLP2 chr11:129991509 3'AG 129991509 Downstream 97bp
chr3 53220312 53220312 1 + G A BLCA 53220318 + 53220298 53220338 41 TGACACTTGCCGCAGAGAATCCCTTTCTCACCCACCTCATC TGACACTTGCCGCAAAGAATCCCTTTCTCACCCACCTCATC < 41bp 1 0.115294051752952 1 0.035496711730957 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCD ENSG00000163932 CDS Human protein_coding chr3:53220318 chr3:53220312 nonsynonymous SNV 0.964 1 15 hm5C_associated_SNPs_15390 0 0 0 0 1 PRKCD chr3:53220356 5'GT 53220356 Upstream 45bp
chr3 52325025 52325025 1 + G A BLCA 52325038 + 52325018 52325058 41 GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG GGGTGCGAAGGACAACCTCCCGGACCGCGATGCGCTGCGGG < 41bp 1 0.526826485866099 1 0.761197865009308 experiment 0.946347028267801 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52325038 chr3:52325025 nonsynonymous SNV 0.712 1 8 hm5C_associated_SNPs_15392 0 0 1 0 1 GLYCTK chr3:52324976 3'AG 52324976 Downstream 50bp
chr3 15262300 15262300 1 + G A BLCA 15262290 + 15262270 15262310 41 TGTTCCTCTCTGTTATAGAGCAGAAGCGCTGAGTGAGCCTT TGTTCCTCTCTGTTATAGAGCAGAAGCGCTAAGTGAGCCTT < 41bp 1 0.736863754730846 1 0.153551340103149 experiment 0.526272490538308 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CAPN7 ENSG00000131375 CDS Human protein_coding chr3:15262290 chr3:15262300 synonymous SNV . 0 31 hm5C_associated_SNPs_15394 0 0 1 0 1 CAPN7 chr3:15262288 3'AG 15262288 Downstream 13bp
chr17 73738710 73738710 1 + G A BLCA 73738719 + 73738699 73738739 41 AGCTGGTGGACGTACGGGTGCCCCTCTTTATCCGGCCTGAG AGCTGGTGGACATACGGGTGCCCCTCTTTATCCGGCCTGAG < 41bp 1 0.0925119360766879 1 0.0175837278366089 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73738719 chr17:73738710 nonsynonymous SNV 0.906 4 12 hm5C_associated_SNPs_15395 0 0 0 0 1 ITGB4 chr17:73738663 3'AG 73738663 Downstream 48bp
chr16 82891976 82891976 1 + C T BLCA 82891983 + 82891963 82892003 41 TCAGGTGCTGCTGCTAACATCTGCAGAAGATTTGGACTGCA TCAGGTGCTGCTGTTAACATCTGCAGAAGATTTGGACTGCA < 41bp 1 0.574817684772438 1 0.790629267692566 experiment 0.850364630455125 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:82891983 chr16:82891976 synonymous SNV . 0 14 hm5C_associated_SNPs_15396 0 0 0 0 1 CDH13 chr16:82891967 3'AG 82891967 Downstream 10bp
chr12 124158196 124158196 1 + G T BLCA 124158178 + 124158158 124158198 41 TCAGAAGGTGTTGGAAGTGACAGTGAGGTGGAAGAGAGGTC TCAGAAGGTGTTGGAAGTGACAGTGAGGTGGAAGAGAGTTC < 41bp 1 0.381411457429514 1 0.275694608688354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124158178 chr12:124158196 nonsynonymous SNV 0.020 2 39 hm5C_associated_SNPs_15398 0 0 1 0 2 TCTN2 chr12:124158162 3'AG 124158162 Downstream 35bp
chr12 124158196 124158196 1 + G T BLCA 124158178 + 124158158 124158198 41 TCAGAAGGTGTTGGAAGTGACAGTGAGGTGGAAGAGAGGTC TCAGAAGGTGTTGGAAGTGACAGTGAGGTGGAAGAGAGTTC < 41bp 1 0.381411457429514 1 0.275694608688354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124158178 chr12:124158196 nonsynonymous SNV 0.020 2 39 hm5C_associated_SNPs_15398 0 0 1 0 2 TCTN2 chr12:124158165 3'AG 124158165 Downstream 32bp
chr19 40882622 40882622 1 + G C BLCA 40882624 + 40882604 40882644 41 TCGGAGCCATCCATGCGGGCCTTCCTGCTCTCTCTGGCTGC TCGGAGCCATCCATGCGGCCCTTCCTGCTCTCTCTGGCTGC < 41bp 1 0.111822619586133 1 0.0169579982757568 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40882624 chr19:40882622 nonsynonymous SNV 0.886 0 19 hm5C_associated_SNPs_15399 0 0 1 0 1 PLD3 chr19:40882681 5'GT 40882681 Upstream 60bp
chr8 145698065 145698065 1 + C G BLCA 145698085 + 145698065 145698105 41 CCACCGCGCGCTCCAGGCACCGCAGGTACCACGGCCGGTGC GCACCGCGCGCTCCAGGCACCGCAGGTACCACGGCCGGTGC < 41bp 1 0.68921546512303 1 0.515072822570801 experiment 0.621569069753941 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145698085 chr8:145698065 nonsynonymous SNV 0.026 0 1 hm5C_associated_SNPs_15401 0 0 0 0 1 KIFC2 chr8:145698089 5'GT 145698089 Upstream 25bp
chr17 45376748 45376748 1 + C T BLCA 45376744 + 45376724 45376764 41 GGCTACTACTGCAACTGTACCACGCGTACTGACACCTGCAT GGCTACTACTGCAACTGTACCACGTGTACTGACACCTGCAT < 41bp 1 0.655905707521549 1 0.119853109121323 experiment 0.688188584956902 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45376744 chr17:45376748 nonsynonymous SNV 0.403 5 25 hm5C_associated_SNPs_15402 0 0 0 0 1 ITGB3 chr17:45376674 3'AG 45376674 Downstream 75bp
chr1 70687346 70687346 1 + C A BLCA 70687362 + 70687342 70687382 41 CCAGCACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGC CCAGAACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGC < 41bp 1 0.631448779562368 1 0.708415448665619 experiment 0.737102440875264 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70687362 chr1:70687346 nonsynonymous SNV 0.876 1 5 hm5C_associated_SNPs_15404 0 0 1 0 2 SRSF11 chr1:70687295 3'AG 70687295 Downstream 52bp
chr1 70687346 70687346 1 + C A BLCA 70687362 + 70687342 70687382 41 CCAGCACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGC CCAGAACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGC < 41bp 1 0.631448779562368 1 0.708415448665619 experiment 0.737102440875264 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70687362 chr1:70687346 nonsynonymous SNV 0.876 1 5 hm5C_associated_SNPs_15404 0 0 1 0 2 SRSF11 chr1:70687298 3'AG 70687298 Downstream 49bp
chr1 70687346 70687346 1 + C A BLCA 70687363 + 70687343 70687383 41 CAGCACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGCG CAGAACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGCG < 41bp 1 0.546913434453238 1 0.51585590839386 experiment 0.906173131093524 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70687363 chr1:70687346 nonsynonymous SNV 0.876 1 4 hm5C_associated_SNPs_15405 0 0 1 0 2 SRSF11 chr1:70687295 3'AG 70687295 Downstream 52bp
chr1 70687346 70687346 1 + C A BLCA 70687363 + 70687343 70687383 41 CAGCACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGCG CAGAACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGCG < 41bp 1 0.546913434453238 1 0.51585590839386 experiment 0.906173131093524 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70687363 chr1:70687346 nonsynonymous SNV 0.876 1 4 hm5C_associated_SNPs_15405 0 0 1 0 2 SRSF11 chr1:70687298 3'AG 70687298 Downstream 49bp
chr2 37475333 37475333 1 + A G BLCA 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATGTGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA < 41bp 1 0.400789880262967 1 0.497036188840866 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475333 nonsynonymous SNV 0.983 3 4 hm5C_associated_SNPs_15406 0 0 1 0 1 NDUFAF7 chr2:37475278 3'AG 37475278 Downstream 56bp
chr2 37475333 37475333 1 + A G BLCA 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATGTGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT < 41bp 1 0.410268471055376 1 0.337448716163635 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475333 nonsynonymous SNV 0.983 3 3 hm5C_associated_SNPs_15407 0 0 1 0 1 NDUFAF7 chr2:37475278 3'AG 37475278 Downstream 56bp
chr5 33455765 33455765 1 + G C BLCA 33455756 + 33455736 33455776 41 AGAAAATCATTAAAGAAAAACAAGCTTTTGAAAGACTGGAA AGAAAATCATTAAAGAAAAACAAGCTTTTCAAAGACTGGAA < 41bp 1 0.320246474071886 1 0.330920398235321 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33455756 chr5:33455765 nonsynonymous SNV 0.996 1 30 hm5C_associated_SNPs_15408 0 0 1 0 2 TARS chr5:33455692 3'AG 33455692 Downstream 74bp
chr5 33455765 33455765 1 + G C BLCA 33455756 + 33455736 33455776 41 AGAAAATCATTAAAGAAAAACAAGCTTTTGAAAGACTGGAA AGAAAATCATTAAAGAAAAACAAGCTTTTCAAAGACTGGAA < 41bp 1 0.320246474071886 1 0.330920398235321 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33455756 chr5:33455765 nonsynonymous SNV 0.996 1 30 hm5C_associated_SNPs_15408 0 0 1 0 2 TARS chr5:33455809 5'GT 33455809 Upstream 45bp
chr1 70687345 70687345 1 + G T BLCA 70687362 + 70687342 70687382 41 CCAGCACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGC CCATCACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGC < 41bp 1 0.600763594020486 1 0.655750036239624 experiment 0.798472811959027 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70687362 chr1:70687345 nonsynonymous SNV 0.896 1 4 hm5C_associated_SNPs_15409 0 0 1 0 2 SRSF11 chr1:70687295 3'AG 70687295 Downstream 51bp
chr1 70687345 70687345 1 + G T BLCA 70687362 + 70687342 70687382 41 CCAGCACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGC CCATCACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGC < 41bp 1 0.600763594020486 1 0.655750036239624 experiment 0.798472811959027 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70687362 chr1:70687345 nonsynonymous SNV 0.896 1 4 hm5C_associated_SNPs_15409 0 0 1 0 2 SRSF11 chr1:70687298 3'AG 70687298 Downstream 48bp
chr1 70687345 70687345 1 + G T BLCA 70687363 + 70687343 70687383 41 CAGCACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGCG CATCACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGCG < 41bp 1 0.607559678099124 1 0.498528987169266 experiment 0.784880643801751 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70687363 chr1:70687345 nonsynonymous SNV 0.896 1 3 hm5C_associated_SNPs_15410 0 0 1 0 2 SRSF11 chr1:70687295 3'AG 70687295 Downstream 51bp
chr1 70687345 70687345 1 + G T BLCA 70687363 + 70687343 70687383 41 CAGCACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGCG CATCACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGCG < 41bp 1 0.607559678099124 1 0.498528987169266 experiment 0.784880643801751 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70687363 chr1:70687345 nonsynonymous SNV 0.896 1 3 hm5C_associated_SNPs_15410 0 0 1 0 2 SRSF11 chr1:70687298 3'AG 70687298 Downstream 48bp
chr4 103522086 103522086 1 + C G BLCA 103522101 + 103522081 103522121 41 ATTCTCAACTTGTGAGGGATCTACTAGAAGTCACATCTGGT ATTCTGAACTTGTGAGGGATCTACTAGAAGTCACATCTGGT < 41bp 1 0.178924878457587 1 0.372961401939392 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103522101 chr4:103522086 nonsynonymous SNV 0.963 0 6 hm5C_associated_SNPs_15411 0 0 1 0 1 NFKB1 chr4:103522166 5'GT 103522166 Upstream 81bp
chr12 57604261 57604261 1 + C G BLCA 57604244 + 57604224 57604264 41 CACTGTCGCAATGGGGGCACCTGTGCTGCCTCCCCCTCTGG CACTGTCGCAATGGGGGCACCTGTGCTGCCTCCCCCTGTGG < 41bp 1 0.13926748102704 1 0.176170766353607 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57604244 chr12:57604261 nonsynonymous SNV 0.032 0 38 hm5C_associated_SNPs_15413 0 0 1 0 1 LRP1 chr12:57604263 5'GT 57604263 Upstream 3bp
chr1 198233300 198233300 1 + G A BLCA 198233296 + 198233276 198233316 41 ATAAAATATTATGCATCATTCATTGAAGATAATGAACTAAA ATAAAATATTATGCATCATTCATTAAAGATAATGAACTAAA < 41bp 1 0.205822766854502 1 0.355567902326584 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233296 chr1:198233300 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_15417 0 0 1 0 2 NEK7 chr1:198233255 3'AG 198233255 Downstream 46bp
chr1 198233300 198233300 1 + G A BLCA 198233296 + 198233276 198233316 41 ATAAAATATTATGCATCATTCATTGAAGATAATGAACTAAA ATAAAATATTATGCATCATTCATTAAAGATAATGAACTAAA < 41bp 1 0.205822766854502 1 0.355567902326584 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233296 chr1:198233300 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_15417 0 0 1 0 2 NEK7 chr1:198233365 5'GT 198233365 Upstream 66bp
chrX 47083822 47083822 1 + G T BLCA 47083814 + 47083794 47083834 41 CGAGGACTTGAAGATGGGGTCTGATGGGGAGAGTGACCAGG CGAGGACTTGAAGATGGGGTCTGATGGGTAGAGTGACCAGG < 41bp 1 0.401603449386662 1 0.0933302640914917 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CDK16 ENSG00000102225 CDS Human other chrX:47083814 chrX:47083822 stopgain 1.000 1 29 hm5C_associated_SNPs_15419 0 0 1 0 2 CDK16 chrX:47083784 3'AG 47083784 Downstream 39bp
chrX 47083822 47083822 1 + G T BLCA 47083814 + 47083794 47083834 41 CGAGGACTTGAAGATGGGGTCTGATGGGGAGAGTGACCAGG CGAGGACTTGAAGATGGGGTCTGATGGGTAGAGTGACCAGG < 41bp 1 0.401603449386662 1 0.0933302640914917 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CDK16 ENSG00000102225 CDS Human protein_coding chrX:47083814 chrX:47083822 stopgain 1.000 1 29 hm5C_associated_SNPs_15419 0 0 1 0 2 CDK16 chrX:47083917 5'GT 47083917 Upstream 96bp
chr1 117618442 117618442 1 + C A BLCA 117618425 + 117618405 117618445 41 GTGTTTCCAAGAAGGTAGAACCCTCAGACCCAGTAGCCCGG GTGTTTCCAAGAAGGTAGAACCCTCAGACCCAGTAGCACGG < 41bp 1 0.0851023149715816 1 0.107341945171356 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117618425 chr1:117618442 synonymous SNV . 0 38 hm5C_associated_SNPs_15420 0 0 1 0 1 TTF2 chr1:117618481 5'GT 117618481 Upstream 40bp
chr11 64978304 64978304 1 + C T BLCA 64978306 + 64978286 64978326 41 ATTTTTCAAAACTCTGGACACAGATCTGGATGGAGTTGTGA ATTTTTCAAAACTCTGGATACAGATCTGGATGGAGTTGTGA < 41bp 1 0.14167386446292 1 0.0947071611881256 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64978306 chr11:64978304 synonymous SNV . 0 19 hm5C_associated_SNPs_15422 0 0 1 0 2 CAPN1 chr11:64978285 3'AG 64978285 Downstream 20bp
chr11 64978304 64978304 1 + C T BLCA 64978306 + 64978286 64978326 41 ATTTTTCAAAACTCTGGACACAGATCTGGATGGAGTTGTGA ATTTTTCAAAACTCTGGATACAGATCTGGATGGAGTTGTGA < 41bp 1 0.14167386446292 1 0.0947071611881256 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64978306 chr11:64978304 synonymous SNV . 0 19 hm5C_associated_SNPs_15422 0 0 1 0 2 CAPN1 chr11:64978343 5'GT 64978343 Upstream 40bp
chr1 235577754 235577754 1 + G A BLCA 235577765 + 235577745 235577785 41 CAGGCACCCGACAGGAGGATCCTTTATTCGTCCGAACAAGG CAGGCACCCAACAGGAGGATCCTTTATTCGTCCGAACAAGG < 41bp 1 0.0107089117517425 1 0.0346108078956604 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235577765 chr1:235577754 synonymous SNV . 0 10 hm5C_associated_SNPs_15423 0 0 1 0 1 TBCE chr1:235577748 3'AG 235577748 Downstream 7bp
chr19 1434829 1434829 1 + C T BLCA 1434836 + 1434816 1434856 41 TCCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGG TCCGTGCCAGGGTTGGGGGGCCCCCCCGCCGGCGGCAGCGG < 41bp 1 0.294524440870968 1 0.158483535051346 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434836 chr19:1434829 nonsynonymous SNV 0.955 1 14 hm5C_associated_SNPs_15426 0 0 1 0 1 DAZAP1 chr19:1434736 3'AG 1434736 Downstream 94bp
chr19 1434829 1434829 1 + C T BLCA 1434837 + 1434817 1434857 41 CCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGC CCGTGCCAGGGTTGGGGGGCCCCCCCGCCGGCGGCAGCGGC < 41bp 1 0.376039760048142 1 0.176503568887711 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434837 chr19:1434829 nonsynonymous SNV 0.955 1 13 hm5C_associated_SNPs_15427 0 0 1 0 1 DAZAP1 chr19:1434736 3'AG 1434736 Downstream 94bp
chr19 1434829 1434829 1 + C T BLCA 1434838 + 1434818 1434858 41 CGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCT CGTGCCAGGGTTGGGGGGCCCCCCCGCCGGCGGCAGCGGCT < 41bp 1 0.461231017288944 1 0.366003692150116 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434838 chr19:1434829 nonsynonymous SNV 0.955 1 12 hm5C_associated_SNPs_15428 0 0 1 0 1 DAZAP1 chr19:1434736 3'AG 1434736 Downstream 94bp
chr19 1434829 1434829 1 + C T BLCA 1434839 + 1434819 1434859 41 GTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCTT GTGCCAGGGTTGGGGGGCCCCCCCGCCGGCGGCAGCGGCTT < 41bp 1 0.746390519989185 1 0.147222191095352 experiment 0.507218960021629 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434839 chr19:1434829 nonsynonymous SNV 0.955 1 11 hm5C_associated_SNPs_15429 0 0 1 0 1 DAZAP1 chr19:1434736 3'AG 1434736 Downstream 94bp
chr10 118314751 118314751 1 + C T BLCA 118314736 + 118314716 118314756 41 CAGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGC CAGGGCACACCTGAATTAGTCCGATTGGACCCCAGTGATGC < 41bp 1 0.313829953693348 1 0.194309294223785 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314736 chr10:118314751 synonymous SNV . 0 36 hm5C_associated_SNPs_15430 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 59bp
chr10 118314751 118314751 1 + C T BLCA 118314737 + 118314717 118314757 41 AGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGCC AGGGCACACCTGAATTAGTCCGATTGGACCCCAGTGATGCC < 41bp 1 0.232979538189309 1 0.0510565936565399 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314737 chr10:118314751 synonymous SNV . 0 35 hm5C_associated_SNPs_15431 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 59bp
chr10 118314751 118314751 1 + C T BLCA 118314745 + 118314725 118314765 41 CCTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGT CCTGAATTAGTCCGATTGGACCCCAGTGATGCCAAATTTGT < 41bp 1 0.597060542988066 1 0.0751306116580963 experiment 0.805878914023868 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314745 chr10:118314751 synonymous SNV . 0 27 hm5C_associated_SNPs_15432 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 59bp
chr10 118314751 118314751 1 + C T BLCA 118314746 + 118314726 118314766 41 CTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTG CTGAATTAGTCCGATTGGACCCCAGTGATGCCAAATTTGTG < 41bp 1 0.200656798339582 1 0.0974610447883606 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314746 chr10:118314751 synonymous SNV . 0 26 hm5C_associated_SNPs_15433 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 59bp
chr10 118314751 118314751 1 + C T BLCA 118314747 + 118314727 118314767 41 TGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGG TGAATTAGTCCGATTGGACCCCAGTGATGCCAAATTTGTGG < 41bp 1 0.381629113325442 1 0.210116744041443 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314747 chr10:118314751 synonymous SNV . 0 25 hm5C_associated_SNPs_15434 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 59bp
chr10 118314751 118314751 1 + C T BLCA 118314748 + 118314728 118314768 41 GAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGA GAATTAGTCCGATTGGACCCCAGTGATGCCAAATTTGTGGA < 41bp 1 0.487720679601561 1 0.24693176150322 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314748 chr10:118314751 synonymous SNV . 0 24 hm5C_associated_SNPs_15435 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 59bp
chr10 118314751 118314751 1 + C T BLCA 118314756 + 118314736 118314776 41 CCGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTC CCGATTGGACCCCAGTGATGCCAAATTTGTGGATGTAATTC < 41bp 1 0.361544678053332 1 0.0375348329544067 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314756 chr10:118314751 synonymous SNV . 0 16 hm5C_associated_SNPs_15436 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 59bp
chr10 118314751 118314751 1 + C T BLCA 118314757 + 118314737 118314777 41 CGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTCA CGATTGGACCCCAGTGATGCCAAATTTGTGGATGTAATTCA < 41bp 1 0.388180308880454 1 0.120315283536911 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314757 chr10:118314751 synonymous SNV . 0 15 hm5C_associated_SNPs_15437 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 59bp
chr12 65632588 65632588 1 + T C BLCA 65632568 + 65632548 65632588 41 ACGTGCTTTTGTTACTGTAACTCACAGATTATTGTTGTTAT ACGTGCTTTTGTTACTGTAACTCACAGATTATTGTTGTTAC < 41bp 1 0.186546310485405 1 0.115595400333405 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LEMD3 ENSG00000174106 CDS Human protein_coding chr12:65632568 chr12:65632588 nonsynonymous SNV 0.998 2 41 hm5C_associated_SNPs_15438 0 0 1 0 1 LEMD3 chr12:65632594 5'GT 65632594 Upstream 7bp
chr16 70562829 70562829 1 + C T BLCA 70562823 + 70562803 70562843 41 CCCGTGGGAAGATCTTGGAGCTGCTTCGCCCAGACCCCAAC CCCGTGGGAAGATCTTGGAGCTGCTTTGCCCAGACCCCAAC < 41bp 1 0.367694006194206 1 0.113999664783478 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70562823 chr16:70562829 nonsynonymous SNV 0.998 3 27 hm5C_associated_SNPs_15439 0 0 1 0 1 SF3B3 chr16:70562776 3'AG 70562776 Downstream 54bp
chr11 64950958 64950958 1 + C G BLCA 64950967 + 64950947 64950987 41 GACTGCTGGCTCTTGGCGGCCATCGCCTCCCTCACTCTCAA GACTGCTGGCTGTTGGCGGCCATCGCCTCCCTCACTCTCAA < 41bp 1 0.247761304810031 1 0.180250585079193 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64950967 chr11:64950958 synonymous SNV . 0 12 hm5C_associated_SNPs_15440 0 0 1 0 1 CAPN1 chr11:64950945 3'AG 64950945 Downstream 14bp
chr17 40714723 40714723 1 + C T BLCA 40714704 + 40714684 40714724 41 TGGCCTCCCTAGCCCCTCGCCTGGCCTCCATCCTGACCTCG TGGCCTCCCTAGCCCCTCGCCTGGCCTCCATCCTGACCTTG < 41bp 1 0.556907573010405 1 0.337471723556519 experiment 0.886184853979189 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COASY ENSG00000068120 CDS Human protein_coding chr17:40714704 chr17:40714723 nonsynonymous SNV 0.944 1 40 hm5C_associated_SNPs_15441 0 0 1 0 1 COASY chr17:40714630 3'AG 40714630 Downstream 94bp
chr12 22208204 22208204 1 + G C BLCA 22208197 + 22208177 22208217 41 AGCTCTACCTCACTAGATGCCATCATAGAATTTCTTAATTA AGCTCTACCTCACTAGATGCCATCATACAATTTCTTAATTA < 41bp 1 0.46639519676336 1 0.0304044485092163 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208197 chr12:22208204 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_15442 0 0 1 1 1 CMAS chr12:22208225 5'GT 22208225 Upstream 22bp
chr2 99182131 99182131 1 + G A BLCA 99182143 + 99182123 99182163 41 GAGGACATGAGCCTTGGGATCATGGACTTGAGGAACGTGAC GAGGACATAAGCCTTGGGATCATGGACTTGAGGAACGTGAC < 41bp 1 0.354968540958104 1 0.273736894130707 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99182143 chr2:99182131 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_15443 0 0 1 0 2 INPP4A chr2:99182103 3'AG 99182103 Downstream 29bp
chr2 99182131 99182131 1 + G A BLCA 99182143 + 99182123 99182163 41 GAGGACATGAGCCTTGGGATCATGGACTTGAGGAACGTGAC GAGGACATAAGCCTTGGGATCATGGACTTGAGGAACGTGAC < 41bp 1 0.354968540958104 1 0.273736894130707 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99182143 chr2:99182131 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_15443 0 0 1 0 2 INPP4A chr2:99182229 5'GT 99182229 Upstream 99bp
chr11 57575892 57575892 1 + C T BLCA 57575904 + 57575884 57575924 41 CTCTGCGTCAAGAGAAGGCTCTTTCTGCCATAGCTGACCTC CTCTGCGTTAAGAGAAGGCTCTTTCTGCCATAGCTGACCTC < 41bp 1 0.0870221913083921 1 0.0448925793170929 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57575904 chr11:57575892 stopgain 1.000 1 9 hm5C_associated_SNPs_15444 0 0 1 0 1 CTNND1 chr11:57575862 3'AG 57575862 Downstream 31bp
chr16 67914796 67914796 1 + G A BLCA 67914803 + 67914783 67914823 41 CCCCTCCCTCCTGGAGGCAGCCTTGACCCAGGAGGCCTCGA CCCCTCCCTCCTGAAGGCAGCCTTGACCCAGGAGGCCTCGA < 41bp 1 0.0313427528391566 1 0.1311896443367 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914803 chr16:67914796 nonsynonymous SNV 0.993 4 14 hm5C_associated_SNPs_15445 0 0 1 0 1 EDC4 chr16:67914893 5'GT 67914893 Upstream 98bp
chr2 32339806 32339806 1 + C T BLCA 32339810 + 32339790 32339830 41 GGATCTGCAGGCCTTTCAGGCCACCATAGAGCACCTAGTTA GGATCTGCAGGCCTTTTAGGCCACCATAGAGCACCTAGTTA < 41bp 1 0.105169738761967 1 0.0565356314182281 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32339810 chr2:32339806 nonsynonymous SNV 0.862 1 17 hm5C_associated_SNPs_15446 0 0 1 0 2 SPAST chr2:32339707 3'AG 32339707 Downstream 100bp
chr2 32339806 32339806 1 + C T BLCA 32339810 + 32339790 32339830 41 GGATCTGCAGGCCTTTCAGGCCACCATAGAGCACCTAGTTA GGATCTGCAGGCCTTTTAGGCCACCATAGAGCACCTAGTTA < 41bp 1 0.105169738761967 1 0.0565356314182281 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32339810 chr2:32339806 nonsynonymous SNV 0.862 1 17 hm5C_associated_SNPs_15446 0 0 1 0 2 SPAST chr2:32339894 5'GT 32339894 Upstream 89bp
chr2 32339806 32339806 1 + C T BLCA 32339811 + 32339791 32339831 41 GATCTGCAGGCCTTTCAGGCCACCATAGAGCACCTAGTTAC GATCTGCAGGCCTTTTAGGCCACCATAGAGCACCTAGTTAC < 41bp 1 0.790240526591549 1 0.14732638001442 experiment 0.419518946816902 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32339811 chr2:32339806 nonsynonymous SNV 0.862 1 16 hm5C_associated_SNPs_15447 0 0 1 0 2 SPAST chr2:32339707 3'AG 32339707 Downstream 100bp
chr2 32339806 32339806 1 + C T BLCA 32339811 + 32339791 32339831 41 GATCTGCAGGCCTTTCAGGCCACCATAGAGCACCTAGTTAC GATCTGCAGGCCTTTTAGGCCACCATAGAGCACCTAGTTAC < 41bp 1 0.790240526591549 1 0.14732638001442 experiment 0.419518946816902 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32339811 chr2:32339806 nonsynonymous SNV 0.862 1 16 hm5C_associated_SNPs_15447 0 0 1 0 2 SPAST chr2:32339894 5'GT 32339894 Upstream 89bp
chr2 32339806 32339806 1 + C T BLCA 32339813 + 32339793 32339833 41 TCTGCAGGCCTTTCAGGCCACCATAGAGCACCTAGTTACAG TCTGCAGGCCTTTTAGGCCACCATAGAGCACCTAGTTACAG < 41bp 1 0.272791817078029 1 0.0547998249530792 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32339813 chr2:32339806 nonsynonymous SNV 0.862 1 14 hm5C_associated_SNPs_15448 0 0 1 0 2 SPAST chr2:32339707 3'AG 32339707 Downstream 100bp
chr2 32339806 32339806 1 + C T BLCA 32339813 + 32339793 32339833 41 TCTGCAGGCCTTTCAGGCCACCATAGAGCACCTAGTTACAG TCTGCAGGCCTTTTAGGCCACCATAGAGCACCTAGTTACAG < 41bp 1 0.272791817078029 1 0.0547998249530792 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32339813 chr2:32339806 nonsynonymous SNV 0.862 1 14 hm5C_associated_SNPs_15448 0 0 1 0 2 SPAST chr2:32339894 5'GT 32339894 Upstream 89bp
chr12 112915812 112915812 1 + G A BLCA 112915794 + 112915774 112915814 41 CTCCCGAGTGATTGTCATGACAACGAAAGAAGTGGAGAGAG CTCCCGAGTGATTGTCATGACAACGAAAGAAGTGGAGAAAG < 41bp 1 0.575829301245864 1 0.270248502492905 experiment 0.848341397508272 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915794 chr12:112915812 nonsynonymous SNV 0.999 2 39 hm5C_associated_SNPs_15449 0 0 1 0 1 PTPN11 chr12:112915819 5'GT 112915819 Upstream 8bp
chr10 12159712 12159712 1 + C T BLCA 12159721 + 12159701 12159741 41 ACCAGGAACAACATTTAACCCGGTCATTGGTGATTCATCTG ACCAGGAACAATATTTAACCCGGTCATTGGTGATTCATCTG < 41bp 1 0.169016804223425 1 0.0632751286029816 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12159721 chr10:12159712 nonsynonymous SNV 0.999 1 12 hm5C_associated_SNPs_15450 0 0 1 0 2 DHTKD1 chr10:12159672 3'AG 12159672 Downstream 41bp
chr10 12159712 12159712 1 + C T BLCA 12159721 + 12159701 12159741 41 ACCAGGAACAACATTTAACCCGGTCATTGGTGATTCATCTG ACCAGGAACAATATTTAACCCGGTCATTGGTGATTCATCTG < 41bp 1 0.169016804223425 1 0.0632751286029816 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12159721 chr10:12159712 nonsynonymous SNV 0.999 1 12 hm5C_associated_SNPs_15450 0 0 1 0 2 DHTKD1 chr10:12159754 5'GT 12159754 Upstream 43bp
chr5 132427025 132427025 1 + G A BLCA 132427041 + 132427021 132427061 41 AAATGAGGAGCCAATGGAAACAGATCAGAATGCAAAGGAGG AAATAAGGAGCCAATGGAAACAGATCAGAATGCAAAGGAGG < 41bp 1 0.288308150475949 1 0.470790594816208 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132427041 chr5:132427025 nonsynonymous SNV 0.983 1 5 hm5C_associated_SNPs_15451 0 0 1 0 1 HSPA4 chr5:132427066 5'GT 132427066 Upstream 42bp
chr7 140404733 140404733 1 + G C BLCA 140404750 + 140404730 140404770 41 ACTGAAGGTGTAGACTCAGCCTCACTCTGTACAAGTGGGTG ACTCAAGGTGTAGACTCAGCCTCACTCTGTACAAGTGGGTG < 41bp 1 0.210720575286028 1 0.172384738922119 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFB2 ENSG00000090266 CDS Human protein_coding chr7:140404750 chr7:140404733 stoploss 0.552 0 4 hm5C_associated_SNPs_15452 0 0 1 1 1 NDUFB2 chr7:140404763 5'GT 140404763 Upstream 31bp
chr11 12243284 12243284 1 + C A BLCA 12243280 + 12243260 12243300 41 AAGAGCTGGAACCAGGGCACCCCTCCCCTGGAGCTGCTGGC AAGAGCTGGAACCAGGGCACCCCTACCCTGGAGCTGCTGGC < 41bp 1 0.169862727763907 1 0.131731301546097 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12243280 chr11:12243284 nonsynonymous SNV 0.766 0 25 hm5C_associated_SNPs_15453 0 0 1 0 2 MICAL2 chr11:12243191 3'AG 12243191 Downstream 94bp
chr11 12243284 12243284 1 + C A BLCA 12243280 + 12243260 12243300 41 AAGAGCTGGAACCAGGGCACCCCTCCCCTGGAGCTGCTGGC AAGAGCTGGAACCAGGGCACCCCTACCCTGGAGCTGCTGGC < 41bp 1 0.169862727763907 1 0.131731301546097 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12243280 chr11:12243284 nonsynonymous SNV 0.766 0 25 hm5C_associated_SNPs_15453 0 0 1 0 2 MICAL2 chr11:12243306 5'GT 12243306 Upstream 23bp
chr9 71842743 71842743 1 + G C BLCA 71842734 + 71842714 71842754 41 CTCCAGAGGAGAGACGTCATCAGTATTCTGATTATGATTAT CTCCAGAGGAGAGACGTCATCAGTATTCTCATTATGATTAT < 41bp 1 0.643243460200672 1 0.234779298305511 experiment 0.713513079598656 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TJP2 ENSG00000119139 CDS Human protein_coding chr9:71842734 chr9:71842743 nonsynonymous SNV 0.962 4 30 hm5C_associated_SNPs_15455 0 0 0 0 2 TJP2 chr9:71842681 3'AG 71842681 Downstream 63bp
chr9 71842743 71842743 1 + G C BLCA 71842734 + 71842714 71842754 41 CTCCAGAGGAGAGACGTCATCAGTATTCTGATTATGATTAT CTCCAGAGGAGAGACGTCATCAGTATTCTCATTATGATTAT < 41bp 1 0.643243460200672 1 0.234779298305511 experiment 0.713513079598656 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TJP2 ENSG00000119139 CDS Human protein_coding chr9:71842734 chr9:71842743 nonsynonymous SNV 0.962 4 30 hm5C_associated_SNPs_15455 0 0 0 0 2 TJP2 chr9:71842789 5'GT 71842789 Upstream 47bp
chr12 57588463 57588463 1 + C T BLCA 57588474 + 57588454 57588494 41 TGAACATGGCGAGGACGAGACCCACTGCAGTGAGTGACCAC TGAACATGGTGAGGACGAGACCCACTGCAGTGAGTGACCAC < 41bp 1 0.0374849503042203 1 0.0358318090438843 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57588474 chr12:57588463 synonymous SNV . 0 10 hm5C_associated_SNPs_15456 0 0 1 0 1 LRP1 chr12:57588482 5'GT 57588482 Upstream 20bp
chr11 71946465 71946465 1 + G C BLCA 71946459 + 71946439 71946479 41 GCTCCATGAAGGTGCGGGTGCCCACGGAGCGCCTGGGCACC GCTCCATGAAGGTGCGGGTGCCCACGCAGCGCCTGGGCACC < 41bp 1 0.0966762875033806 1 0.070339173078537 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946459 chr11:71946465 nonsynonymous SNV 0.996 2 27 hm5C_associated_SNPs_15457 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 31bp
chr11 71946465 71946465 1 + G C BLCA 71946460 + 71946440 71946480 41 CTCCATGAAGGTGCGGGTGCCCACGGAGCGCCTGGGCACCC CTCCATGAAGGTGCGGGTGCCCACGCAGCGCCTGGGCACCC < 41bp 1 0.234931918329519 1 0.0634771883487701 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946460 chr11:71946465 nonsynonymous SNV 0.996 2 26 hm5C_associated_SNPs_15458 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 31bp
chr11 71946465 71946465 1 + G C BLCA 71946461 + 71946441 71946481 41 TCCATGAAGGTGCGGGTGCCCACGGAGCGCCTGGGCACCCG TCCATGAAGGTGCGGGTGCCCACGCAGCGCCTGGGCACCCG < 41bp 1 0.675224979479805 1 0.289904296398163 experiment 0.64955004104039 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946461 chr11:71946465 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_15459 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 31bp
chr11 71946465 71946465 1 + G C BLCA 71946476 + 71946456 71946496 41 GTGCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGG GTGCCCACGCAGCGCCTGGGCACCCGTGAGCGGCTCTACGG < 41bp 1 0.382062397721179 1 0.0381741225719452 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946476 chr11:71946465 nonsynonymous SNV 0.996 2 10 hm5C_associated_SNPs_15460 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 31bp
chr11 71946465 71946465 1 + G C BLCA 71946478 + 71946458 71946498 41 GCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTG GCCCACGCAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTG < 41bp 1 0.302737684776419 1 0.0652424395084381 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946478 chr11:71946465 nonsynonymous SNV 0.996 2 8 hm5C_associated_SNPs_15461 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 31bp
chr11 71946465 71946465 1 + G C BLCA 71946479 + 71946459 71946499 41 CCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTGG CCCACGCAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTGG < 41bp 1 0.174630146036012 1 0.493315488100052 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946479 chr11:71946465 nonsynonymous SNV 0.996 2 7 hm5C_associated_SNPs_15462 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 31bp
chr11 71946465 71946465 1 + G C BLCA 71946480 + 71946460 71946500 41 CCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTGGG CCACGCAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTGGG < 41bp 1 0.731940386967742 1 0.615382134914398 experiment 0.536119226064516 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946480 chr11:71946465 nonsynonymous SNV 0.996 2 6 hm5C_associated_SNPs_15463 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 31bp
chr19 41078260 41078260 1 + G A BLCA 41078256 + 41078236 41078276 41 TCCTGCAGGACCCAGGATGGCAGTGAGTTTTTGCTCCAGGC TCCTGCAGGACCCAGGATGGCAGTAAGTTTTTGCTCCAGGC < 41bp 1 0.292563428213104 1 0.0778204500675201 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41078256 chr19:41078260 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_15464 0 0 0 0 2 SPTBN4 chr19:41078244 3'AG 41078244 Downstream 17bp
chr19 41078260 41078260 1 + G A BLCA 41078256 + 41078236 41078276 41 TCCTGCAGGACCCAGGATGGCAGTGAGTTTTTGCTCCAGGC TCCTGCAGGACCCAGGATGGCAGTAAGTTTTTGCTCCAGGC < 41bp 1 0.292563428213104 1 0.0778204500675201 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41078256 chr19:41078260 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_15464 0 0 0 0 2 SPTBN4 chr19:41078286 5'GT 41078286 Upstream 27bp
chr1 155582033 155582033 1 + G C BLCA 155582039 + 155582019 155582059 41 GCGCGAAGGCGGCAGAGCTGCTACAAGATGAATATTCAGGG GCGCGAAGGCGGCACAGCTGCTACAAGATGAATATTCAGGG < 41bp 1 0.796129413513809 1 0.283140480518341 experiment 0.407741172972382 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582039 chr1:155582033 nonsynonymous SNV 0.784 3 15 hm5C_associated_SNPs_15465 0 0 0 0 2 MSTO1 chr1:155581973 3'AG 155581973 Downstream 61bp
chr1 155582033 155582033 1 + G C BLCA 155582039 + 155582019 155582059 41 GCGCGAAGGCGGCAGAGCTGCTACAAGATGAATATTCAGGG GCGCGAAGGCGGCACAGCTGCTACAAGATGAATATTCAGGG < 41bp 1 0.796129413513809 1 0.283140480518341 experiment 0.407741172972382 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582039 chr1:155582033 nonsynonymous SNV 0.784 3 15 hm5C_associated_SNPs_15465 0 0 0 0 2 MSTO1 chr1:155582107 5'GT 155582107 Upstream 75bp
chr5 102360917 102360917 1 + G A BLCA 102360927 + 102360907 102360947 41 AACAGAAACTGATCAAAGAGCCAGGCTCGGGAGTGCCTGTT AACAGAAACTAATCAAAGAGCCAGGCTCGGGAGTGCCTGTT < 41bp 1 0.31879835945017 1 0.717759132385254 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PAM ENSG00000145730 CDS Human protein_coding chr5:102360927 chr5:102360917 synonymous SNV . 0 11 hm5C_associated_SNPs_15466 0 0 0 0 2 PAM chr5:102360835 3'AG 102360835 Downstream 83bp
chr5 102360917 102360917 1 + G A BLCA 102360927 + 102360907 102360947 41 AACAGAAACTGATCAAAGAGCCAGGCTCGGGAGTGCCTGTT AACAGAAACTAATCAAAGAGCCAGGCTCGGGAGTGCCTGTT < 41bp 1 0.31879835945017 1 0.717759132385254 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PAM ENSG00000145730 CDS Human protein_coding chr5:102360927 chr5:102360917 synonymous SNV . 0 11 hm5C_associated_SNPs_15466 0 0 0 0 2 PAM chr5:102360838 3'AG 102360838 Downstream 80bp
chr7 69583172 69583172 1 + G A BLCA 69583186 + 69583166 69583206 41 AGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA AGTGGAAAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA < 41bp 1 0.117320540081207 1 0.123046636581421 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69583186 chr7:69583172 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_15467 0 0 0 0 2 AUTS2 chr7:69583118 3'AG 69583118 Downstream 55bp
chr7 69583172 69583172 1 + G A BLCA 69583186 + 69583166 69583206 41 AGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA AGTGGAAAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA < 41bp 1 0.117320540081207 1 0.123046636581421 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69583186 chr7:69583172 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_15467 0 0 0 0 2 AUTS2 chr7:69583219 5'GT 69583219 Upstream 48bp
chr14 93125804 93125804 1 + C G BLCA 93125812 + 93125792 93125832 41 CTCCATGGCCCTCGGCAACCCAGGTCAGTGGGCAGCCGGGA CTCCATGGCCCTGGGCAACCCAGGTCAGTGGGCAGCCGGGA < 41bp 1 0.595534548164652 1 0.63863867521286 experiment 0.808930903670696 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93125812 chr14:93125804 synonymous SNV . 0 13 hm5C_associated_SNPs_15468 0 0 0 0 1 RIN3 chr14:93125814 5'GT 93125814 Upstream 11bp
chr8 1876682 1876682 1 + A G BLCA 1876673 + 1876653 1876693 41 CCCAAAGTCATTGAGTGCTTCAACGTGGAATCTCGCATCCT CCCAAAGTCATTGAGTGCTTCAACGTGGAGTCTCGCATCCT < 41bp 1 0.397101331905186 1 0.221286654472351 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1876673 chr8:1876682 synonymous SNV . 0 30 hm5C_associated_SNPs_15470 0 0 0 0 1 ARHGEF10 chr8:1876593 3'AG 1876593 Downstream 90bp
chr10 85909866 85909866 1 + C A BLCA 85909855 + 85909835 85909875 41 CTCTGACAATATTAGGGGGTCCTCTTCTCATCAGAGCTGCA CTCTGACAATATTAGGGGGTCCTCTTCTCATAAGAGCTGCA < 41bp 1 0.0579061366824604 1 0.0280451476573944 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GHITM ENSG00000165678 CDS Human protein_coding chr10:85909855 chr10:85909866 synonymous SNV . 0 32 hm5C_associated_SNPs_15471 0 0 1 0 1 GHITM chr10:85909811 3'AG 85909811 Downstream 56bp
chr10 85909866 85909866 1 + C A BLCA 85909856 + 85909836 85909876 41 TCTGACAATATTAGGGGGTCCTCTTCTCATCAGAGCTGCAT TCTGACAATATTAGGGGGTCCTCTTCTCATAAGAGCTGCAT < 41bp 1 0.332834926755106 1 0.0391121506690979 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GHITM ENSG00000165678 CDS Human protein_coding chr10:85909856 chr10:85909866 synonymous SNV . 0 31 hm5C_associated_SNPs_15472 0 0 1 0 1 GHITM chr10:85909811 3'AG 85909811 Downstream 56bp
chr10 85909866 85909866 1 + C A BLCA 85909858 + 85909838 85909878 41 TGACAATATTAGGGGGTCCTCTTCTCATCAGAGCTGCATGG TGACAATATTAGGGGGTCCTCTTCTCATAAGAGCTGCATGG < 41bp 1 0.499687980107581 1 0.251644492149353 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GHITM ENSG00000165678 CDS Human protein_coding chr10:85909858 chr10:85909866 synonymous SNV . 0 29 hm5C_associated_SNPs_15473 0 0 1 0 1 GHITM chr10:85909811 3'AG 85909811 Downstream 56bp
chr1 215777626 215777626 1 + G C BLCA 215777635 + 215777615 215777655 41 TCATGCTATCAGAGAAGCATCTTGTATCAGGTAAAATGATT TCATGCTATCACAGAAGCATCTTGTATCAGGTAAAATGATT < 41bp 1 0.167841825934462 1 0.0778402388095856 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215777635 chr1:215777626 nonsynonymous SNV 0.999 4 12 hm5C_associated_SNPs_15474 0 0 1 0 1 KCTD3 chr1:215777644 5'GT 215777644 Upstream 19bp
chr1 155279912 155279912 1 + G T BLCA 155279915 + 155279895 155279935 41 AAGCAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGGT AAGCAGGATTTCGTTCATCACTTCTCCCAGATCGTTAGGGT < 41bp 1 0.207910573104959 1 0.333400666713715 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155279915 chr1:155279912 nonsynonymous SNV 0.989 0 18 hm5C_associated_SNPs_15478 0 0 1 0 3 FDPS chr1:155279834 3'AG 155279834 Downstream 79bp
chr1 155279912 155279912 1 + G T BLCA 155279915 + 155279895 155279935 41 AAGCAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGGT AAGCAGGATTTCGTTCATCACTTCTCCCAGATCGTTAGGGT < 41bp 1 0.207910573104959 1 0.333400666713715 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155279915 chr1:155279912 nonsynonymous SNV 0.989 0 18 hm5C_associated_SNPs_15478 0 0 1 0 3 FDPS chr1:155279855 3'AG 155279855 Downstream 58bp
chr1 155279912 155279912 1 + G T BLCA 155279915 + 155279895 155279935 41 AAGCAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGGT AAGCAGGATTTCGTTCATCACTTCTCCCAGATCGTTAGGGT < 41bp 1 0.207910573104959 1 0.333400666713715 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155279915 chr1:155279912 nonsynonymous SNV 0.989 0 18 hm5C_associated_SNPs_15478 0 0 1 0 3 FDPS chr1:155279996 5'GT 155279996 Upstream 85bp
chr4 115589294 115589294 1 + G A BLCA 115589284 + 115589264 115589304 41 CTGAGCCATGGTGGTTTGAACAGTATTTTTGAAACTATATA CTGAGCCATGGTGGTTTGAACAGTATTTTTAAAACTATATA < 41bp 1 0.485006587053129 1 0.0972437560558319 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UGT8 ENSG00000174607 CDS Human protein_coding chr4:115589284 chr4:115589294 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_15479 0 0 0 0 1 UGT8 chr4:115589241 3'AG 115589241 Downstream 54bp
chr12 21598305 21598305 1 + G C BLCA 21598304 + 21598284 21598324 41 TCTAAAATATTGGAAGAATTCGATGTTGAAGAACAATCAAG TCTAAAATATTGGAAGAATTCCATGTTGAAGAACAATCAAG < 41bp 1 0.320443844956283 1 0.357246696949005 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PYROXD1 ENSG00000121350 CDS Human protein_coding chr12:21598304 chr12:21598305 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_15480 0 0 1 0 2 PYROXD1 chr12:21598281 3'AG 21598281 Downstream 25bp
chr12 21598305 21598305 1 + G C BLCA 21598304 + 21598284 21598324 41 TCTAAAATATTGGAAGAATTCGATGTTGAAGAACAATCAAG TCTAAAATATTGGAAGAATTCCATGTTGAAGAACAATCAAG < 41bp 1 0.320443844956283 1 0.357246696949005 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PYROXD1 ENSG00000121350 CDS Human protein_coding chr12:21598304 chr12:21598305 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_15480 0 0 1 0 2 PYROXD1 chr12:21598400 5'GT 21598400 Upstream 96bp
chr16 845804 845804 1 + C G BLCA 845820 + 845800 845840 41 TGCTCCTGGACATTCTTGCACCCAAGCTCCGCCCCGTGAGT TGCTGCTGGACATTCTTGCACCCAAGCTCCGCCCCGTGAGT < 41bp 1 0.2944730630746 1 0.0788703262805939 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845820 chr16:845804 synonymous SNV . 0 5 hm5C_associated_SNPs_15481 0 0 1 0 1 CHTF18 chr16:845834 5'GT 845834 Upstream 31bp
chr3 127786429 127786429 1 + G C BLCA 127786410 + 127786390 127786430 41 ATGCTGGGCTCCTGTGCATTCTTCTCCAAAACGTGGATTGA ATGCTGGGCTCCTGTGCATTCTTCTCCAAAACGTGGATTCA < 41bp 1 0.251169408791153 1 0.295458137989044 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SEC61A1 ENSG00000058262 CDS Human protein_coding chr3:127786410 chr3:127786429 nonsynonymous SNV 0.991 2 40 hm5C_associated_SNPs_15482 0 0 1 0 1 SEC61A1 chr3:127786455 5'GT 127786455 Upstream 27bp
chr14 53175509 53175509 1 + G C BLCA 53175498 + 53175478 53175518 41 CTAGTCATTGTTAAAGCTACCAATGGACCAAGATATGTTGT CTAGTCATTGTTAAAGCTACCAATGGACCAACATATGTTGT < 41bp 1 0.169527467789857 1 0.546840786933899 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMC6 ENSG00000100519 CDS Human protein_coding chr14:53175498 chr14:53175509 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_15483 0 0 1 0 2 PSMC6 chr14:53175482 3'AG 53175482 Downstream 28bp
chr14 53175509 53175509 1 + G C BLCA 53175498 + 53175478 53175518 41 CTAGTCATTGTTAAAGCTACCAATGGACCAAGATATGTTGT CTAGTCATTGTTAAAGCTACCAATGGACCAACATATGTTGT < 41bp 1 0.169527467789857 1 0.546840786933899 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMC6 ENSG00000100519 CDS Human protein_coding chr14:53175498 chr14:53175509 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_15483 0 0 1 0 2 PSMC6 chr14:53175534 5'GT 53175534 Upstream 26bp
chr14 23794476 23794476 1 + C T BLCA 23794459 + 23794439 23794479 41 CTCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCATG CTCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATTATG < 41bp 1 0.25431612156559 1 0.166892826557159 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23794459 chr14:23794476 nonsynonymous SNV 0.996 2 38 hm5C_associated_SNPs_15484 0 0 1 0 1 BCL2L2-PABPN1;PABPN1 chr14:23794456 3'AG 23794456 Downstream 21bp
chr14 23794476 23794476 1 + C T BLCA 23794460 + 23794440 23794480 41 TCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCATGG TCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATTATGG < 41bp 1 0.411871005433116 1 0.403824627399445 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23794460 chr14:23794476 nonsynonymous SNV 0.996 2 37 hm5C_associated_SNPs_15485 0 0 1 0 1 BCL2L2-PABPN1;PABPN1 chr14:23794456 3'AG 23794456 Downstream 21bp
chr1 186047318 186047318 1 + A C BLCA 186047314 + 186047294 186047334 41 ATGTGTGGCTGTGAATGAGGCTGGAGAAGATTCCCTTCAAT ATGTGTGGCTGTGAATGAGGCTGGCGAAGATTCCCTTCAAT < 41bp 1 0.164097705102309 1 0.674646556377411 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HMCN1 ENSG00000143341 CDS Human protein_coding chr1:186047314 chr1:186047318 synonymous SNV . 0 25 hm5C_associated_SNPs_15486 0 0 0 0 2 HMCN1 chr1:186047239 3'AG 186047239 Downstream 80bp
chr1 186047318 186047318 1 + A C BLCA 186047314 + 186047294 186047334 41 ATGTGTGGCTGTGAATGAGGCTGGAGAAGATTCCCTTCAAT ATGTGTGGCTGTGAATGAGGCTGGCGAAGATTCCCTTCAAT < 41bp 1 0.164097705102309 1 0.674646556377411 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HMCN1 ENSG00000143341 CDS Human protein_coding chr1:186047314 chr1:186047318 synonymous SNV . 0 25 hm5C_associated_SNPs_15486 0 0 0 0 2 HMCN1 chr1:186047352 5'GT 186047352 Upstream 35bp
chr16 70562804 70562804 1 + C A BLCA 70562823 + 70562803 70562843 41 CCCGTGGGAAGATCTTGGAGCTGCTTCGCCCAGACCCCAAC CACGTGGGAAGATCTTGGAGCTGCTTCGCCCAGACCCCAAC < 41bp 1 0.259436629445416 1 0.0870944261550903 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70562823 chr16:70562804 synonymous SNV . 0 2 hm5C_associated_SNPs_15487 0 0 1 0 1 SF3B3 chr16:70562776 3'AG 70562776 Downstream 29bp
chr20 1902322 1902322 1 + C G BLCA 1902319 + 1902299 1902339 41 ACGTCACCTTGCAGGGGGACCCTCTTCGTGGGACTGCCAAC ACGTCACCTTGCAGGGGGACCCTGTTCGTGGGACTGCCAAC < 41bp 1 0.135628537465097 1 0.0282852053642273 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1902319 chr20:1902322 nonsynonymous SNV 0.628 1 24 hm5C_associated_SNPs_15488 0 0 0 0 1 SIRPA chr20:1902358 5'GT 1902358 Upstream 37bp
chr3 193335031 193335031 1 + G A BLCA 193335015 + 193334995 193335035 41 AGAAGACCTTGTAAAGTTAGCACCAGACTTTGACAAGATTG AGAAGACCTTGTAAAGTTAGCACCAGACTTTGACAAAATTG < 41bp 1 0.640038866171369 1 0.225530505180359 experiment 0.719922267657263 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193335015 chr3:193335031 synonymous SNV . 0 37 hm5C_associated_SNPs_15493 0 0 0 0 2 OPA1 chr3:193334967 3'AG 193334967 Downstream 65bp
chr3 193335031 193335031 1 + G A BLCA 193335015 + 193334995 193335035 41 AGAAGACCTTGTAAAGTTAGCACCAGACTTTGACAAGATTG AGAAGACCTTGTAAAGTTAGCACCAGACTTTGACAAAATTG < 41bp 1 0.640038866171369 1 0.225530505180359 experiment 0.719922267657263 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193335015 chr3:193335031 synonymous SNV . 0 37 hm5C_associated_SNPs_15493 0 0 0 0 2 OPA1 chr3:193335074 5'GT 193335074 Upstream 44bp
chr9 140166660 140166660 1 + C G BLCA 140166668 + 140166648 140166688 41 TGGCTTCTTCCTCACCGCCTCTCCAAGGTAGGCCTGCTGGG TGGCTTCTTCCTGACCGCCTCTCCAAGGTAGGCCTGCTGGG < 41bp 1 0.728407787823797 1 0.957396626472473 experiment 0.543184424352405 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140166668 chr9:140166660 synonymous SNV . 0 13 hm5C_associated_SNPs_15494 0 0 1 0 1 NELFB chr9:140166674 5'GT 140166674 Upstream 15bp
chr19 41925047 41925047 1 + G A BLCA 41925063 + 41925043 41925083 41 TGCTGATGTATCGGGACTACCCCCTGGAACTATTCATGGCC TGCTAATGTATCGGGACTACCCCCTGGAACTATTCATGGCC < 41bp 1 0.301412224698267 1 0.268359512090683 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCKDHA ENSG00000248098;ENSG00000255730 CDS Human other chr19:41925063 chr19:41925047 synonymous SNV . 0 5 hm5C_associated_SNPs_15495 0 0 1 0 1 BCKDHA chr19:41925040 3'AG 41925040 Downstream 8bp
chr19 41925047 41925047 1 + G A BLCA 41925064 + 41925044 41925084 41 GCTGATGTATCGGGACTACCCCCTGGAACTATTCATGGCCC GCTAATGTATCGGGACTACCCCCTGGAACTATTCATGGCCC < 41bp 1 0.476484652577377 1 0.450756669044495 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCKDHA ENSG00000248098;ENSG00000255730 CDS Human other chr19:41925064 chr19:41925047 synonymous SNV . 0 4 hm5C_associated_SNPs_15496 0 0 1 0 1 BCKDHA chr19:41925040 3'AG 41925040 Downstream 8bp
chr14 104037964 104037964 1 + C G BLCA 104037976 + 104037956 104037996 41 AAAGGTCTCAAGATTCTGCCCTCCAAGAAAGTCTTGCCATG AAAGGTCTGAAGATTCTGCCCTCCAAGAAAGTCTTGCCATG < 41bp 1 0.686436912309797 1 0.961793899536133 experiment 0.627126175380406 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74773;RNA-BisSeq;Huh7;Control APOPT1 ENSG00000256053;ENSG00000256500 CDS Human other chr14:104037976 chr14:104037964 stopgain 0.890 1 9 hm5C_associated_SNPs_15497 0 0 1 0 1 APOPT1 chr14:104037960 3'AG 104037960 Downstream 5bp
chr19 8503337 8503337 1 + G A BLCA 8503319 + 8503299 8503339 41 TACTCCGAGTGGAGAAAGACCAACCAGAAAGTTCGCCTGAA TACTCCGAGTGGAGAAAGACCAACCAGAAAGTTCGCCTAAA < 41bp 1 0.417654654567696 1 0.0757662951946259 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8503319 chr19:8503337 synonymous SNV . 0 39 hm5C_associated_SNPs_15498 0 0 0 0 1 MARCH2 chr19:8503272 3'AG 8503272 Downstream 66bp
chr5 154330479 154330479 1 + G C BLCA 154330472 + 154330452 154330492 41 AAATTGTTTATCCTCCACAACTGCCTGGAGAACCTCGGAGA AAATTGTTTATCCTCCACAACTGCCTGCAGAACCTCGGAGA < 41bp 1 0.441975385827165 1 0.0586500763893127 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MRPL22 ENSG00000082515 CDS Human protein_coding chr5:154330472 chr5:154330479 nonsynonymous SNV 0.998 1 28 hm5C_associated_SNPs_15499 0 0 1 0 1 MRPL22 chr5:154330498 5'GT 154330498 Upstream 20bp
chr17 38512341 38512341 1 + G A BLCA 38512361 + 38512341 38512381 41 GAGGGCCTGGACACTCTGAGCGGACAGCCGGGGGGTGGGGG AAGGGCCTGGACACTCTGAGCGGACAGCCGGGGGGTGGGGG < 41bp 1 0.32383899224941 1 0.703026175498962 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RARA ENSG00000131759 CDS Human protein_coding chr17:38512361 chr17:38512341 nonsynonymous SNV 0.999 3 1 hm5C_associated_SNPs_15503 0 0 1 0 1 RARA chr17:38512261 3'AG 38512261 Downstream 81bp
chr17 4905849 4905849 1 + C T BLCA 4905833 + 4905813 4905853 41 AGTCGGGGTTCTCTGCGGGTCCGGGAGCACCCCATCCTGGG AGTCGGGGTTCTCTGCGGGTCCGGGAGCACCCCATCTTGGG < 41bp 1 0.483443248854293 1 0.583019435405731 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905833 chr17:4905849 synonymous SNV . 0 37 hm5C_associated_SNPs_15506 0 0 1 0 2 KIF1C chr17:4905759 3'AG 4905759 Downstream 91bp
chr17 4905849 4905849 1 + C T BLCA 4905833 + 4905813 4905853 41 AGTCGGGGTTCTCTGCGGGTCCGGGAGCACCCCATCCTGGG AGTCGGGGTTCTCTGCGGGTCCGGGAGCACCCCATCTTGGG < 41bp 1 0.483443248854293 1 0.583019435405731 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905833 chr17:4905849 synonymous SNV . 0 37 hm5C_associated_SNPs_15506 0 0 1 0 2 KIF1C chr17:4905937 5'GT 4905937 Upstream 89bp
chr13 103298650 103298650 1 + G A BLCA 103298646 + 103298626 103298666 41 GTAGTTTCCTCATTACAGCCCAGTGAGTGCAAAAACAAAAC GTAGTTTCCTCATTACAGCCCAGTAAGTGCAAAAACAAAAC < 41bp 1 0.175621416866025 1 0.133042424917221 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPP2 ENSG00000134900 CDS Human protein_coding chr13:103298646 chr13:103298650 synonymous SNV . 0 25 hm5C_associated_SNPs_15507 0 0 1 0 2 TPP2 chr13:103298644 3'AG 103298644 Downstream 7bp
chr13 103298650 103298650 1 + G A BLCA 103298646 + 103298626 103298666 41 GTAGTTTCCTCATTACAGCCCAGTGAGTGCAAAAACAAAAC GTAGTTTCCTCATTACAGCCCAGTAAGTGCAAAAACAAAAC < 41bp 1 0.175621416866025 1 0.133042424917221 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPP2 ENSG00000134900 CDS Human protein_coding chr13:103298646 chr13:103298650 synonymous SNV . 0 25 hm5C_associated_SNPs_15507 0 0 1 0 2 TPP2 chr13:103298740 5'GT 103298740 Upstream 91bp
chr1 161696749 161696749 1 + G A BLCA 161696753 + 161696733 161696773 41 CCACCCGCAGTGTCCGGAAACGCAGTCCGTGGCTGCAGCTC CCACCCGCAGTGTCCGAAAACGCAGTCCGTGGCTGCAGCTC < 41bp 1 0.783418212661297 1 0.193816095590591 experiment 0.433163574677405 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCRLB ENSG00000162746 CDS Human protein_coding chr1:161696753 chr1:161696749 nonsynonymous SNV 0.948 1 17 hm5C_associated_SNPs_15509 0 0 0 0 1 FCRLB chr1:161696783 5'GT 161696783 Upstream 35bp
chr3 186302239 186302239 1 + G C BLCA 186302256 + 186302236 186302276 41 TAAGATCACCAGGCCAGGAGCGAAGCTATGGAAGAAAGGGG TAACATCACCAGGCCAGGAGCGAAGCTATGGAAGAAAGGGG < 41bp 1 0.307035046579803 1 0.524138033390045 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186302256 chr3:186302239 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_15510 0 0 1 0 1 DNAJB11 chr3:186302219 3'AG 186302219 Downstream 21bp
chr11 64950979 64950979 1 + C T BLCA 64950967 + 64950947 64950987 41 GACTGCTGGCTCTTGGCGGCCATCGCCTCCCTCACTCTCAA GACTGCTGGCTCTTGGCGGCCATCGCCTCCCTTACTCTCAA < 41bp 1 0.223468388105911 1 0.149765521287918 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64950967 chr11:64950979 synonymous SNV . 0 33 hm5C_associated_SNPs_15511 0 0 1 0 2 CAPN1 chr11:64950945 3'AG 64950945 Downstream 35bp
chr11 64950979 64950979 1 + C T BLCA 64950967 + 64950947 64950987 41 GACTGCTGGCTCTTGGCGGCCATCGCCTCCCTCACTCTCAA GACTGCTGGCTCTTGGCGGCCATCGCCTCCCTTACTCTCAA < 41bp 1 0.223468388105911 1 0.149765521287918 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64950967 chr11:64950979 synonymous SNV . 0 33 hm5C_associated_SNPs_15511 0 0 1 0 2 CAPN1 chr11:64951063 5'GT 64951063 Upstream 85bp
chr19 2794815 2794815 1 + C T BLCA 2794811 + 2794791 2794831 41 CATGTTTCCCCCTCCAAGGACATCCGGACAGCCAGCACAGA CATGTTTCCCCCTCCAAGGACATCTGGACAGCCAGCACAGA < 41bp 1 0.0783998738213751 1 0.414427161216736 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THOP1 ENSG00000172009 CDS Human protein_coding chr19:2794811 chr19:2794815 nonsynonymous SNV 0.030 4 25 hm5C_associated_SNPs_15512 0 0 1 0 2 THOP1 chr19:2794762 3'AG 2794762 Downstream 54bp
chr19 2794815 2794815 1 + C T BLCA 2794811 + 2794791 2794831 41 CATGTTTCCCCCTCCAAGGACATCCGGACAGCCAGCACAGA CATGTTTCCCCCTCCAAGGACATCTGGACAGCCAGCACAGA < 41bp 1 0.0783998738213751 1 0.414427161216736 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THOP1 ENSG00000172009 CDS Human protein_coding chr19:2794811 chr19:2794815 nonsynonymous SNV 0.030 4 25 hm5C_associated_SNPs_15512 0 0 1 0 2 THOP1 chr19:2794910 5'GT 2794910 Upstream 96bp
chr11 67052440 67052440 1 + G A BLCA 67052434 + 67052414 67052454 41 TCCCCAACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCCCG TCCCCAACCGCCTCGAGTGGCGGGGCAAGGGCGAGGCCCCG < 41bp 1 0.744459537029383 1 0.940813064575195 experiment 0.511080925941234 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052434 chr11:67052440 nonsynonymous SNV 0.970 1 27 hm5C_associated_SNPs_15513 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 15bp
chr11 67052440 67052440 1 + G A BLCA 67052439 + 67052419 67052459 41 AACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCCCGGTAAG AACCGCCTCGAGTGGCGGGGCAAGGGCGAGGCCCCGGTAAG < 41bp 1 0.624000861558637 1 0.849875092506409 experiment 0.751998276882726 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052439 chr11:67052440 nonsynonymous SNV 0.970 1 22 hm5C_associated_SNPs_15514 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 15bp
chr11 67052440 67052440 1 + G A BLCA 67052450 + 67052430 67052470 41 GTGGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCG GTGGCGGGGCAAGGGCGAGGCCCCGGTAAGGAGCCCGTGCG < 41bp 1 0.45895777666733 1 0.688251197338104 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052450 chr11:67052440 nonsynonymous SNV 0.970 1 11 hm5C_associated_SNPs_15515 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 15bp
chr11 67052440 67052440 1 + G A BLCA 67052451 + 67052431 67052471 41 TGGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGG TGGCGGGGCAAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGG < 41bp 1 0.648046920984097 1 0.737037420272827 experiment 0.703906158031806 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052451 chr11:67052440 nonsynonymous SNV 0.970 1 10 hm5C_associated_SNPs_15516 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 15bp
chr11 67052440 67052440 1 + G A BLCA 67052452 + 67052432 67052472 41 GGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGGG GGCGGGGCAAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGGG < 41bp 1 0.415552290864663 1 0.623901665210724 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052452 chr11:67052440 nonsynonymous SNV 0.970 1 9 hm5C_associated_SNPs_15517 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 15bp
chr11 67052440 67052440 1 + G A BLCA 67052453 + 67052433 67052473 41 GCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGGGG GCGGGGCAAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGGGG < 41bp 1 0.738262166177123 1 0.476984739303589 experiment 0.523475667645753 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052453 chr11:67052440 nonsynonymous SNV 0.970 1 8 hm5C_associated_SNPs_15518 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 15bp
chr16 70164432 70164432 1 + C G BLCA 70164445 + 70164425 70164465 41 ATTTTGTCAACTGTGCTGGCCAGGTAGGTCAGCACCAACAC ATTTTGTGAACTGTGCTGGCCAGGTAGGTCAGCACCAACAC < 41bp 1 0.435065877630819 1 0.408545196056366 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70164445 chr16:70164432 synonymous SNV . 0 8 hm5C_associated_SNPs_15519 0 0 0 0 1 PDPR chr16:70164447 5'GT 70164447 Upstream 16bp
chr20 42680115 42680115 1 + C T BLCA 42680122 + 42680102 42680142 41 TCCCCATCACCGCCGGGGAGCAAGTCAGCGACCCCCTCTCC TCCCCATCACCGCTGGGGAGCAAGTCAGCGACCCCCTCTCC < 41bp 1 0.442479969795431 1 0.280876934528351 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42680122 chr20:42680115 nonsynonymous SNV 0.718 4 14 hm5C_associated_SNPs_15520 0 0 0 0 1 TOX2 chr20:42680185 5'GT 42680185 Upstream 71bp
chr12 104340666 104340666 1 + G A BLCA 104340684 + 104340664 104340704 41 GAGATAGAATAGAAAGAATGCTTCGCCTCAGTTTGAACATT GAAATAGAATAGAAAGAATGCTTCGCCTCAGTTTGAACATT < 41bp 1 0.170977689419559 1 0.0928095877170563 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340684 chr12:104340666 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_15521 0 0 1 0 1 HSP90B1 chr12:104340719 5'GT 104340719 Upstream 54bp
chr5 86645051 86645051 1 + C G BLCA 86645061 + 86645041 86645081 41 CTGCAGTTTTCTTGTGAGGCCCTCAGATAATACTCCTGGCG CTGCAGTTTTGTTGTGAGGCCCTCAGATAATACTCCTGGCG < 41bp 1 0.157257564388578 1 0.0979334712028503 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RASA1 ENSG00000145715 CDS Human protein_coding chr5:86645061 chr5:86645051 nonsynonymous SNV 1.000 5 11 hm5C_associated_SNPs_15523 0 0 1 0 1 RASA1 chr5:86645031 3'AG 86645031 Downstream 21bp
chr2 27662642 27662642 1 + C G BLCA 27662638 + 27662618 27662658 41 TGTTTCCTTTTCTAGGAGTTCATTCAAAAGTGCCTGCAGTC TGTTTCCTTTTCTAGGAGTTCATTGAAAAGTGCCTGCAGTC < 41bp 1 0.164463312490795 1 0.0877741575241089 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27662638 chr2:27662642 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_15526 0 0 1 0 1 NRBP1 chr2:27662633 3'AG 27662633 Downstream 10bp
chr9 134067676 134067676 1 + C T BLCA 134067670 + 134067650 134067690 41 CAGCAAGCCTTTCTCATTTTCTCCATCAGGGTCAGTAATGA CAGCAAGCCTTTCTCATTTTCTCCATTAGGGTCAGTAATGA < 41bp 1 0.582328898302745 1 0.969248294830322 experiment 0.835342203394509 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NUP214 ENSG00000126883 CDS Human protein_coding chr9:134067670 chr9:134067676 nonsynonymous SNV 0.950 0 27 hm5C_associated_SNPs_15527 0 0 1 0 1 NUP214 chr9:134067595 3'AG 134067595 Downstream 82bp
chr17 78704387 78704387 1 + A G BLCA 78704396 + 78704376 78704416 41 TCCCTCTGTCCATATATGACCTGCAGACGTGGATGGGCAGC TCCCTCTGTCCGTATATGACCTGCAGACGTGGATGGGCAGC < 41bp 1 0.525557317707267 1 0.18274262547493 experiment 0.948885364585466 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPTOR ENSG00000141564 CDS Human protein_coding chr17:78704396 chr17:78704387 nonsynonymous SNV 0.997 0 12 hm5C_associated_SNPs_15529 0 0 1 0 1 RPTOR chr17:78704360 3'AG 78704360 Downstream 28bp
chr3 57543322 57543322 1 + G C BLCA 57543327 + 57543307 57543347 41 TTCTACGAAGCCCTCGAGTCCGACCCACTTCACAAAGAACT TTCTACGAAGCCCTCCAGTCCGACCCACTTCACAAAGAACT < 41bp 1 0.107641685600583 1 0.101626485586166 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDE12 ENSG00000174840 CDS Human protein_coding chr3:57543327 chr3:57543322 nonsynonymous SNV 0.614 1 16 hm5C_associated_SNPs_15531 0 0 1 0 1 PDE12 chr3:57543414 5'GT 57543414 Upstream 93bp
chr1 12009946 12009946 1 + C T BLCA 12009955 + 12009935 12009975 41 GAGGATCTGGTCATTCTCTTCGCAGACAGGTAGGTGGGTCA GAGGATCTGGTTATTCTCTTCGCAGACAGGTAGGTGGGTCA < 41bp 1 0.495380196274684 1 0.805894494056702 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12009955 chr1:12009946 synonymous SNV . 0 12 hm5C_associated_SNPs_15532 0 0 1 0 1 PLOD1 chr1:12009963 5'GT 12009963 Upstream 18bp
chr1 12061836 12061836 1 + C T BLCA 12061838 + 12061818 12061858 41 CCTCCTAGGGGGCGCTCTCGCAGAAGGCTTTCAAGTGAGGA CCTCCTAGGGGGCGCTCTTGCAGAAGGCTTTCAAGTGAGGA < 41bp 1 0.759067503165485 1 0.733775019645691 experiment 0.48186499366903 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061838 chr1:12061836 synonymous SNV . 0 19 hm5C_associated_SNPs_15533 0 0 1 0 2 MFN2 chr1:12061826 3'AG 12061826 Downstream 11bp
chr1 12061836 12061836 1 + C T BLCA 12061838 + 12061818 12061858 41 CCTCCTAGGGGGCGCTCTCGCAGAAGGCTTTCAAGTGAGGA CCTCCTAGGGGGCGCTCTTGCAGAAGGCTTTCAAGTGAGGA < 41bp 1 0.759067503165485 1 0.733775019645691 experiment 0.48186499366903 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061838 chr1:12061836 synonymous SNV . 0 19 hm5C_associated_SNPs_15533 0 0 1 0 2 MFN2 chr1:12061893 5'GT 12061893 Upstream 58bp
chr12 49888605 49888605 1 + C G BLCA 49888623 + 49888603 49888643 41 TTCAAGAGGAACAGTCTGCGCCTTCCTCAGAGAAAGGTGGT TTGAAGAGGAACAGTCTGCGCCTTCCTCAGAGAAAGGTGGT < 41bp 1 0.0127921312615914 1 0.140361249446869 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPATS2 ENSG00000123352 CDS Human protein_coding chr12:49888623 chr12:49888605 nonsynonymous SNV 0.822 0 3 hm5C_associated_SNPs_15534 0 0 1 0 1 SPATS2 chr12:49888524 3'AG 49888524 Downstream 82bp
chr17 60769597 60769597 1 + C T BLCA 60769607 + 60769587 60769627 41 GGCAGCGCTTCCAGAGAACCCAGCGGCCCTGGTGGTGGTGC GGCAGCGCTTTCAGAGAACCCAGCGGCCCTGGTGGTGGTGC < 41bp 1 0.66379628548339 1 0.662897109985352 experiment 0.672407429033219 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60769607 chr17:60769597 nonsynonymous SNV 0.611 0 11 hm5C_associated_SNPs_15535 0 0 0 0 1 MRC2 chr17:60769592 3'AG 60769592 Downstream 6bp
chr7 98563392 98563392 1 + G A BLCA 98563380 + 98563360 98563400 41 ACGCGCCTGGCAGTGATGAGCATGGAGATGCGGAAGAACTT ACGCGCCTGGCAGTGATGAGCATGGAGATGCGAAAGAACTT < 41bp 1 0.182403851423112 1 0.551432907581329 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98563380 chr7:98563392 synonymous SNV . 0 33 hm5C_associated_SNPs_15537 0 0 1 0 1 TRRAP chr7:98563319 3'AG 98563319 Downstream 74bp
chr5 14498739 14498739 1 + G C BLCA 14498746 + 14498726 14498766 41 CGTCGGCCAGCCTGAGGGTCCTAGGTAAGCACCGTGCAACG CGTCGGCCAGCCTCAGGGTCCTAGGTAAGCACCGTGCAACG < 41bp 1 0.390747311952633 1 0.166970580816269 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14498746 chr5:14498739 synonymous SNV . 0 14 hm5C_associated_SNPs_15538 0 0 1 0 1 TRIO chr5:14498749 5'GT 14498749 Upstream 11bp
chr7 23235486 23235486 1 + G C BLCA 23235473 + 23235453 23235493 41 TTCAGGTTTTACAGACATTTCACCAGAGGAATTGAGGCTTG TTCAGGTTTTACAGACATTTCACCAGAGGAATTCAGGCTTG < 41bp 1 0.748384259040454 1 0.709267973899841 experiment 0.503231481919092 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23235473 chr7:23235486 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_15539 0 0 1 0 2 NUPL2 chr7:23235458 3'AG 23235458 Downstream 29bp
chr7 23235486 23235486 1 + G C BLCA 23235473 + 23235453 23235493 41 TTCAGGTTTTACAGACATTTCACCAGAGGAATTGAGGCTTG TTCAGGTTTTACAGACATTTCACCAGAGGAATTCAGGCTTG < 41bp 1 0.748384259040454 1 0.709267973899841 experiment 0.503231481919092 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23235473 chr7:23235486 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_15539 0 0 1 0 2 NUPL2 chr7:23235534 5'GT 23235534 Upstream 49bp
chr14 73637515 73637515 1 + G C BLCA 73637529 + 73637509 73637549 41 ACAATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTT ACAATACAGAACGGCAGGAGCACAACGACAGACGGAGCCTT < 41bp 1 0.639249167422172 1 0.27521887421608 experiment 0.721501665155656 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637529 chr14:73637515 nonsynonymous SNV 0.557 1 7 hm5C_associated_SNPs_15540 0 0 1 0 1 PSEN1 chr14:73637505 3'AG 73637505 Downstream 11bp
chr14 73637515 73637515 1 + G C BLCA 73637531 + 73637511 73637551 41 AATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGG AATACAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGG < 41bp 1 0.584838570105304 1 0.195853888988495 experiment 0.830322859789393 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637531 chr14:73637515 nonsynonymous SNV 0.557 1 5 hm5C_associated_SNPs_15541 0 0 1 0 1 PSEN1 chr14:73637505 3'AG 73637505 Downstream 11bp
chr22 32174116 32174116 1 + G A BLCA 32174133 + 32174113 32174153 41 AATGAGAAGGTCATGTGTGGCTACATCAGTGAAGATACCAG AATAAGAAGGTCATGTGTGGCTACATCAGTGAAGATACCAG < 41bp 1 0.490748745380194 1 0.838034749031067 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32174133 chr22:32174116 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_15543 0 0 1 0 1 DEPDC5 chr22:32174085 3'AG 32174085 Downstream 32bp
chr11 68363617 68363617 1 + G A BLCA 68363598 + 68363578 68363618 41 GACAGTGAGGAAAGTACAGACTCTGAAGAAGAAGATGGAGC GACAGTGAGGAAAGTACAGACTCTGAAGAAGAAGATGGAAC < 41bp 1 0.403468106643184 1 0.443053632974625 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68363598 chr11:68363617 nonsynonymous SNV 0.996 0 40 hm5C_associated_SNPs_15545 0 0 1 0 2 PPP6R3 chr11:68363565 3'AG 68363565 Downstream 53bp
chr11 68363617 68363617 1 + G A BLCA 68363598 + 68363578 68363618 41 GACAGTGAGGAAAGTACAGACTCTGAAGAAGAAGATGGAGC GACAGTGAGGAAAGTACAGACTCTGAAGAAGAAGATGGAAC < 41bp 1 0.403468106643184 1 0.443053632974625 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68363598 chr11:68363617 nonsynonymous SNV 0.996 0 40 hm5C_associated_SNPs_15545 0 0 1 0 2 PPP6R3 chr11:68363686 5'GT 68363686 Upstream 70bp
chr19 10561309 10561309 1 + C T BLCA 10561299 + 10561279 10561319 41 GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA GCGGTCCCCGCTGGGCGGCCCCACCCCTGTTTGCAAGGCCA < 41bp 1 0.0296905391075567 1 0.20378789305687 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561299 chr19:10561309 synonymous SNV . 0 31 hm5C_associated_SNPs_15546 0 0 0 0 2 PDE4A chr19:10561279 3'AG 10561279 Downstream 31bp
chr19 10561309 10561309 1 + C T BLCA 10561299 + 10561279 10561319 41 GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA GCGGTCCCCGCTGGGCGGCCCCACCCCTGTTTGCAAGGCCA < 41bp 1 0.0296905391075567 1 0.20378789305687 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561299 chr19:10561309 synonymous SNV . 0 31 hm5C_associated_SNPs_15546 0 0 0 0 2 PDE4A chr19:10561328 5'GT 10561328 Upstream 20bp
chr2 113315529 113315529 1 + G C BLCA 113315541 + 113315521 113315561 41 TAGCTTTTGATAAGAAGGCTCAGAAGACCAGTGTTTCCATG TAGCTTTTCATAAGAAGGCTCAGAAGACCAGTGTTTCCATG < 41bp 1 0.407748902324987 1 0.319472014904022 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113315541 chr2:113315529 nonsynonymous SNV 0.989 2 9 hm5C_associated_SNPs_15547 0 0 1 0 1 POLR1B chr2:113315487 3'AG 113315487 Downstream 43bp
chr10 5955750 5955750 1 + A T BLCA 5955758 + 5955738 5955778 41 TATCTTCAGGAGAATTCCTGCACTCAGGCCACAAAAGTTAA TATCTTCAGGAGTATTCCTGCACTCAGGCCACAAAAGTTAA < 41bp 1 0.0685376347393108 1 0.0523222982883453 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5955758 chr10:5955750 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_15548 0 0 1 0 1 FBXO18 chr10:5955710 3'AG 5955710 Downstream 41bp
chr11 57373936 57373936 1 + C T BLCA 57373925 + 57373905 57373945 41 CCAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA CCAAGAAAACCAGAATGGAACCCTTTCACTTTAAAAACTCA < 41bp 1 0.024782999676061 1 0.0519026517868042 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373925 chr11:57373936 synonymous SNV . 0 32 hm5C_associated_SNPs_15549 0 0 0 0 2 SERPING1 chr11:57373881 3'AG 57373881 Downstream 56bp
chr11 57373936 57373936 1 + C T BLCA 57373925 + 57373905 57373945 41 CCAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA CCAAGAAAACCAGAATGGAACCCTTTCACTTTAAAAACTCA < 41bp 1 0.024782999676061 1 0.0519026517868042 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373925 chr11:57373936 synonymous SNV . 0 32 hm5C_associated_SNPs_15549 0 0 0 0 2 SERPING1 chr11:57374020 5'GT 57374020 Upstream 85bp
chr11 57373936 57373936 1 + C T BLCA 57373926 + 57373906 57373946 41 CAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAG CAAGAAAACCAGAATGGAACCCTTTCACTTTAAAAACTCAG < 41bp 1 0.00939662383726225 1 0.113619416952133 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373926 chr11:57373936 synonymous SNV . 0 31 hm5C_associated_SNPs_15550 0 0 0 0 2 SERPING1 chr11:57373881 3'AG 57373881 Downstream 56bp
chr11 57373936 57373936 1 + C T BLCA 57373926 + 57373906 57373946 41 CAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAG CAAGAAAACCAGAATGGAACCCTTTCACTTTAAAAACTCAG < 41bp 1 0.00939662383726225 1 0.113619416952133 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373926 chr11:57373936 synonymous SNV . 0 31 hm5C_associated_SNPs_15550 0 0 0 0 2 SERPING1 chr11:57374020 5'GT 57374020 Upstream 85bp
chr11 57373936 57373936 1 + C T BLCA 57373927 + 57373907 57373947 41 AAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAGT AAGAAAACCAGAATGGAACCCTTTCACTTTAAAAACTCAGT < 41bp 1 0.0124702206213992 1 0.0577499866485596 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373927 chr11:57373936 synonymous SNV . 0 30 hm5C_associated_SNPs_15551 0 0 0 0 2 SERPING1 chr11:57373881 3'AG 57373881 Downstream 56bp
chr11 57373936 57373936 1 + C T BLCA 57373927 + 57373907 57373947 41 AAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAGT AAGAAAACCAGAATGGAACCCTTTCACTTTAAAAACTCAGT < 41bp 1 0.0124702206213992 1 0.0577499866485596 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373927 chr11:57373936 synonymous SNV . 0 30 hm5C_associated_SNPs_15551 0 0 0 0 2 SERPING1 chr11:57374020 5'GT 57374020 Upstream 85bp
chr11 57373936 57373936 1 + C T BLCA 57373933 + 57373913 57373953 41 ACCAGAATGGAACCCTTTCACTTCAAAAACTCAGTTATAAA ACCAGAATGGAACCCTTTCACTTTAAAAACTCAGTTATAAA < 41bp 1 0.27100313328773 1 0.291001856327057 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373933 chr11:57373936 synonymous SNV . 0 24 hm5C_associated_SNPs_15552 0 0 0 0 2 SERPING1 chr11:57373881 3'AG 57373881 Downstream 56bp
chr11 57373936 57373936 1 + C T BLCA 57373933 + 57373913 57373953 41 ACCAGAATGGAACCCTTTCACTTCAAAAACTCAGTTATAAA ACCAGAATGGAACCCTTTCACTTTAAAAACTCAGTTATAAA < 41bp 1 0.27100313328773 1 0.291001856327057 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373933 chr11:57373936 synonymous SNV . 0 24 hm5C_associated_SNPs_15552 0 0 0 0 2 SERPING1 chr11:57374020 5'GT 57374020 Upstream 85bp
chr7 114655760 114655760 1 + T C BLCA 114655752 + 114655732 114655772 41 GAAAATGAAGATTGTTGTGTCCACTGTATCCTGGCTTGCTT GAAAATGAAGATTGTTGTGTCCACTGTACCCTGGCTTGCTT < 41bp 1 0.199328352580579 1 0.0478044748306274 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MDFIC ENSG00000135272 CDS Human protein_coding chr7:114655752 chr7:114655760 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_15554 0 0 1 0 1 MDFIC chr7:114655742 3'AG 114655742 Downstream 19bp
chr7 114655760 114655760 1 + T C BLCA 114655776 + 114655756 114655796 41 TGTATCCTGGCTTGCTTGTTCTGCGAATTCCTGACCCTTTG TGTACCCTGGCTTGCTTGTTCTGCGAATTCCTGACCCTTTG < 41bp 1 0.795404921735795 1 0.35045200586319 experiment 0.40919015652841 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MDFIC ENSG00000135272 CDS Human protein_coding chr7:114655776 chr7:114655760 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_15555 0 0 1 0 1 MDFIC chr7:114655742 3'AG 114655742 Downstream 19bp
chr1 160323984 160323984 1 + C T BLCA 160323975 + 160323955 160323995 41 TGCTGTCATCCTCAGGAGGCCAAATCAGTCCCAGCCTCTCC TGCTGTCATCCTCAGGAGGCCAAATCAGTTCCAGCCTCTCC < 41bp 1 0.231597617211843 1 0.11955389380455 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCSTN ENSG00000162736 CDS Human protein_coding chr1:160323975 chr1:160323984 nonsynonymous SNV 0.992 1 30 hm5C_associated_SNPs_15556 0 0 1 0 2 NCSTN chr1:160323908 3'AG 160323908 Downstream 77bp
chr1 160323984 160323984 1 + C T BLCA 160323975 + 160323955 160323995 41 TGCTGTCATCCTCAGGAGGCCAAATCAGTCCCAGCCTCTCC TGCTGTCATCCTCAGGAGGCCAAATCAGTTCCAGCCTCTCC < 41bp 1 0.231597617211843 1 0.11955389380455 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCSTN ENSG00000162736 CDS Human protein_coding chr1:160323975 chr1:160323984 nonsynonymous SNV 0.992 1 30 hm5C_associated_SNPs_15556 0 0 1 0 2 NCSTN chr1:160324080 5'GT 160324080 Upstream 97bp
chr3 179291249 179291249 1 + G C BLCA 179291256 + 179291236 179291276 41 TGTTCTCATGTCAGAGGCACCGGTGAGATAAAGATTTTCTT TGTTCTCATGTCACAGGCACCGGTGAGATAAAGATTTTCTT < 41bp 1 0.343035885830973 1 0.259391844272614 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ACTL6A ENSG00000136518 CDS Human protein_coding chr3:179291256 chr3:179291249 nonsynonymous SNV 0.996 5 14 hm5C_associated_SNPs_15558 0 0 0 0 2 ACTL6A chr3:179291157 3'AG 179291157 Downstream 93bp
chr3 179291249 179291249 1 + G C BLCA 179291256 + 179291236 179291276 41 TGTTCTCATGTCAGAGGCACCGGTGAGATAAAGATTTTCTT TGTTCTCATGTCACAGGCACCGGTGAGATAAAGATTTTCTT < 41bp 1 0.343035885830973 1 0.259391844272614 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ACTL6A ENSG00000136518 CDS Human protein_coding chr3:179291256 chr3:179291249 nonsynonymous SNV 0.996 5 14 hm5C_associated_SNPs_15558 0 0 0 0 2 ACTL6A chr3:179291257 5'GT 179291257 Upstream 9bp
chr9 110086268 110086268 1 + G C BLCA 110086266 + 110086246 110086286 41 TGCTTCCAGCGTTACTACAGCAGATAGGTCGAGAGAATCCT TGCTTCCAGCGTTACTACAGCACATAGGTCGAGAGAATCCT < 41bp 1 0.211119535631809 1 0.0608995258808136 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD23B ENSG00000119318 CDS Human protein_coding chr9:110086266 chr9:110086268 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_15559 0 0 1 0 2 RAD23B chr9:110086171 3'AG 110086171 Downstream 98bp
chr9 110086268 110086268 1 + G C BLCA 110086266 + 110086246 110086286 41 TGCTTCCAGCGTTACTACAGCAGATAGGTCGAGAGAATCCT TGCTTCCAGCGTTACTACAGCACATAGGTCGAGAGAATCCT < 41bp 1 0.211119535631809 1 0.0608995258808136 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD23B ENSG00000119318 CDS Human protein_coding chr9:110086266 chr9:110086268 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_15559 0 0 1 0 2 RAD23B chr9:110086298 5'GT 110086298 Upstream 31bp
chr12 53858606 53858606 1 + C T BLCA 53858610 + 53858590 53858630 41 CCCCGTCCATGTGCCTCAACCCTGACCTGGAGGGACCACCT CCCCGTCCATGTGCCTTAACCCTGACCTGGAGGGACCACCT < 41bp 1 0.654134391374141 1 0.171458125114441 experiment 0.691731217251717 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCBP2 ENSG00000197111 CDS Human protein_coding chr12:53858610 chr12:53858606 synonymous SNV . 0 17 hm5C_associated_SNPs_15560 0 0 1 0 2 PCBP2 chr12:53858544 3'AG 53858544 Downstream 63bp
chr12 53858606 53858606 1 + C T BLCA 53858610 + 53858590 53858630 41 CCCCGTCCATGTGCCTCAACCCTGACCTGGAGGGACCACCT CCCCGTCCATGTGCCTTAACCCTGACCTGGAGGGACCACCT < 41bp 1 0.654134391374141 1 0.171458125114441 experiment 0.691731217251717 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCBP2 ENSG00000197111 CDS Human protein_coding chr12:53858610 chr12:53858606 synonymous SNV . 0 17 hm5C_associated_SNPs_15560 0 0 1 0 2 PCBP2 chr12:53858636 5'GT 53858636 Upstream 31bp
chr4 54257217 54257217 1 + G C BLCA 54257222 + 54257202 54257242 41 TATGGGTTTAATGAAGATACCTGGAAAGCTTACTGTGAAAA TATGGGTTTAATGAACATACCTGGAAAGCTTACTGTGAAAA < 41bp 1 0.700257677903558 1 0.354367613792419 experiment 0.599484644192884 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FIP1L1 ENSG00000145216 CDS Human protein_coding chr4:54257222 chr4:54257217 nonsynonymous SNV 0.998 4 16 hm5C_associated_SNPs_15561 0 0 1 0 2 FIP1L1 chr4:54257176 3'AG 54257176 Downstream 42bp
chr4 54257217 54257217 1 + G C BLCA 54257222 + 54257202 54257242 41 TATGGGTTTAATGAAGATACCTGGAAAGCTTACTGTGAAAA TATGGGTTTAATGAACATACCTGGAAAGCTTACTGTGAAAA < 41bp 1 0.700257677903558 1 0.354367613792419 experiment 0.599484644192884 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FIP1L1 ENSG00000145216 CDS Human protein_coding chr4:54257222 chr4:54257217 nonsynonymous SNV 0.998 4 16 hm5C_associated_SNPs_15561 0 0 1 0 2 FIP1L1 chr4:54257306 5'GT 54257306 Upstream 90bp
chr11 67052451 67052451 1 + C T BLCA 67052434 + 67052414 67052454 41 TCCCCAACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCCCG TCCCCAACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCTCCG < 41bp 1 0.720188511821375 1 0.914176404476166 experiment 0.559622976357249 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052434 chr11:67052451 synonymous SNV . 0 38 hm5C_associated_SNPs_15562 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 4bp
chr11 67052451 67052451 1 + C T BLCA 67052439 + 67052419 67052459 41 AACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCCCGGTAAG AACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCTCCGGTAAG < 41bp 1 0.670555433732721 1 0.80268657207489 experiment 0.658889132534558 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052439 chr11:67052451 synonymous SNV . 0 33 hm5C_associated_SNPs_15563 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 4bp
chr11 67052451 67052451 1 + C T BLCA 67052450 + 67052430 67052470 41 GTGGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCG GTGGCGGGGCGAGGGCGAGGCTCCGGTAAGGAGCCCGTGCG < 41bp 1 0.721759811116107 1 0.908690333366394 experiment 0.556480377767786 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052450 chr11:67052451 synonymous SNV . 0 22 hm5C_associated_SNPs_15564 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 4bp
chr11 67052451 67052451 1 + C T BLCA 67052452 + 67052432 67052472 41 GGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGGG GGCGGGGCGAGGGCGAGGCTCCGGTAAGGAGCCCGTGCGGG < 41bp 1 0.556236450795583 1 0.640161693096161 experiment 0.887527098408834 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052452 chr11:67052451 synonymous SNV . 0 20 hm5C_associated_SNPs_15565 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 4bp
chr11 67052451 67052451 1 + C T BLCA 67052453 + 67052433 67052473 41 GCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGGGG GCGGGGCGAGGGCGAGGCTCCGGTAAGGAGCCCGTGCGGGG < 41bp 1 0.753947040708461 1 0.647568106651306 experiment 0.492105918583078 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052453 chr11:67052451 synonymous SNV . 0 19 hm5C_associated_SNPs_15566 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 4bp
chr11 66812099 66812099 1 + C T BLCA 66812087 + 66812067 66812107 41 GCCGATGCTGTGGGGGAGATCCTGCTCTCCCTCAGCTACCT GCCGATGCTGTGGGGGAGATCCTGCTCTCCCTTAGCTACCT < 41bp 1 0.290457425214759 1 0.229694306850433 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SYT12 ENSG00000173227 CDS Human protein_coding chr11:66812087 chr11:66812099 synonymous SNV . 0 33 hm5C_associated_SNPs_15568 0 0 0 0 2 SYT12 chr11:66812064 3'AG 66812064 Downstream 36bp
chr11 66812099 66812099 1 + C T BLCA 66812087 + 66812067 66812107 41 GCCGATGCTGTGGGGGAGATCCTGCTCTCCCTCAGCTACCT GCCGATGCTGTGGGGGAGATCCTGCTCTCCCTTAGCTACCT < 41bp 1 0.290457425214759 1 0.229694306850433 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SYT12 ENSG00000173227 CDS Human protein_coding chr11:66812087 chr11:66812099 synonymous SNV . 0 33 hm5C_associated_SNPs_15568 0 0 0 0 2 SYT12 chr11:66812184 5'GT 66812184 Upstream 86bp
chr19 10572652 10572652 1 + G C BLCA 10572643 + 10572623 10572663 41 AAGTGACCAGCTCAGGGGTCCTCCTGCTAGATAACTACTCC AAGTGACCAGCTCAGGGGTCCTCCTGCTACATAACTACTCC < 41bp 1 0.163404999865194 1 0.168900907039642 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10572643 chr19:10572652 nonsynonymous SNV 0.989 4 30 hm5C_associated_SNPs_15569 0 0 0 0 2 PDE4A chr19:10572553 3'AG 10572553 Downstream 100bp
chr19 10572652 10572652 1 + G C BLCA 10572643 + 10572623 10572663 41 AAGTGACCAGCTCAGGGGTCCTCCTGCTAGATAACTACTCC AAGTGACCAGCTCAGGGGTCCTCCTGCTACATAACTACTCC < 41bp 1 0.163404999865194 1 0.168900907039642 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10572643 chr19:10572652 nonsynonymous SNV 0.989 4 30 hm5C_associated_SNPs_15569 0 0 0 0 2 PDE4A chr19:10572675 5'GT 10572675 Upstream 24bp
chr16 56501895 56501895 1 + G A BLCA 56501910 + 56501890 56501930 41 TTGAAGAAAGTTCTGAAATTCTCCTGAAGGAGTTTCTTAAG TTGAAAAAAGTTCTGAAATTCTCCTGAAGGAGTTTCTTAAG < 41bp 1 0.579520476180948 1 0.921625137329102 experiment 0.840959047638103 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGFOD1 ENSG00000087263 CDS Human protein_coding chr16:56501910 chr16:56501895 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_15579 0 0 1 0 2 OGFOD1 chr16:56501817 3'AG 56501817 Downstream 79bp
chr16 56501895 56501895 1 + G A BLCA 56501910 + 56501890 56501930 41 TTGAAGAAAGTTCTGAAATTCTCCTGAAGGAGTTTCTTAAG TTGAAAAAAGTTCTGAAATTCTCCTGAAGGAGTTTCTTAAG < 41bp 1 0.579520476180948 1 0.921625137329102 experiment 0.840959047638103 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGFOD1 ENSG00000087263 CDS Human protein_coding chr16:56501910 chr16:56501895 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_15579 0 0 1 0 2 OGFOD1 chr16:56501930 5'GT 56501930 Upstream 36bp
chr1 46295205 46295205 1 + G C BLCA 46295193 + 46295173 46295213 41 TCGTCAGGAGAAGCATCAAACCTGGTTCGAATGAGAAACCA TCGTCAGGAGAAGCATCAAACCTGGTTCGAATCAGAAACCA < 41bp 1 0.344404828387794 1 0.262414336204529 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAST2 ENSG00000086015 CDS Human protein_coding chr1:46295193 chr1:46295205 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_15580 0 0 1 0 2 MAST2 chr1:46295111 3'AG 46295111 Downstream 95bp
chr1 46295205 46295205 1 + G C BLCA 46295193 + 46295173 46295213 41 TCGTCAGGAGAAGCATCAAACCTGGTTCGAATGAGAAACCA TCGTCAGGAGAAGCATCAAACCTGGTTCGAATCAGAAACCA < 41bp 1 0.344404828387794 1 0.262414336204529 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAST2 ENSG00000086015 CDS Human protein_coding chr1:46295193 chr1:46295205 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_15580 0 0 1 0 2 MAST2 chr1:46295253 5'GT 46295253 Upstream 49bp
chr11 57373917 57373917 1 + G A BLCA 57373925 + 57373905 57373945 41 CCAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA CCAAGAAAACCAAAATGGAACCCTTTCACTTCAAAAACTCA < 41bp 1 0.0160433399768994 1 0.0602539777755737 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373925 chr11:57373917 nonsynonymous SNV 0.001 1 13 hm5C_associated_SNPs_15582 0 0 0 0 1 SERPING1 chr11:57373881 3'AG 57373881 Downstream 37bp
chr11 57373917 57373917 1 + G A BLCA 57373926 + 57373906 57373946 41 CAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAG CAAGAAAACCAAAATGGAACCCTTTCACTTCAAAAACTCAG < 41bp 1 0.0091422360799863 1 0.0781199634075165 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373926 chr11:57373917 nonsynonymous SNV 0.001 1 12 hm5C_associated_SNPs_15583 0 0 0 0 1 SERPING1 chr11:57373881 3'AG 57373881 Downstream 37bp
chr11 57373917 57373917 1 + G A BLCA 57373927 + 57373907 57373947 41 AAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAGT AAGAAAACCAAAATGGAACCCTTTCACTTCAAAAACTCAGT < 41bp 1 0.0138589721284166 1 0.056576132774353 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373927 chr11:57373917 nonsynonymous SNV 0.001 1 11 hm5C_associated_SNPs_15584 0 0 0 0 1 SERPING1 chr11:57373881 3'AG 57373881 Downstream 37bp
chr11 57373917 57373917 1 + G A BLCA 57373933 + 57373913 57373953 41 ACCAGAATGGAACCCTTTCACTTCAAAAACTCAGTTATAAA ACCAAAATGGAACCCTTTCACTTCAAAAACTCAGTTATAAA < 41bp 1 0.475984130030718 1 0.348529398441315 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373933 chr11:57373917 nonsynonymous SNV 0.001 1 5 hm5C_associated_SNPs_15585 0 0 0 0 1 SERPING1 chr11:57373881 3'AG 57373881 Downstream 37bp
chr7 94057038 94057038 1 + C T BLCA 94057027 + 94057007 94057047 41 CGATGGAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCAC CGATGGAGACTTCTACAGGGCTGACCAGCCTTGCTCAGCAC < 41bp 1 0.131998490724217 1 0.0281738638877869 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057027 chr7:94057038 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_15587 1 0 0 0 1 COL1A2 chr7:94056939 3'AG 94056939 Downstream 100bp
chr7 94057038 94057038 1 + C T BLCA 94057032 + 94057012 94057052 41 GAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCACCTTCT GAGACTTCTACAGGGCTGACCAGCCTTGCTCAGCACCTTCT < 41bp 1 0.154326988252017 1 0.300578534603119 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057032 chr7:94057038 nonsynonymous SNV 1.000 5 27 hm5C_associated_SNPs_15588 1 0 0 0 1 COL1A2 chr7:94056939 3'AG 94056939 Downstream 100bp
chr16 2569581 2569581 1 + G C BLCA 2569563 + 2569543 2569583 41 AGCTTCCTCCAGCTGGGCGCCGGCCTGAGCGTGGGCCTGAG AGCTTCCTCCAGCTGGGCGCCGGCCTGAGCGTGGGCCTCAG < 41bp 1 0.506777224678658 1 0.758703708648682 experiment 0.986445550642684 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V0C ENSG00000185883 CDS Human protein_coding chr16:2569563 chr16:2569581 synonymous SNV . 0 39 hm5C_associated_SNPs_15590 0 0 1 0 1 ATP6V0C chr16:2569542 3'AG 2569542 Downstream 40bp
chr2 27900720 27900720 1 + G A BLCA 27900703 + 27900683 27900723 41 TGTCCCGGAAGAAACTTCACCTGAGAACTTTTGAACTGAGG TGTCCCGGAAGAAACTTCACCTGAGAACTTTTGAACTAAGG < 41bp 1 0.266867632249152 1 0.289260387420654 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27900703 chr2:27900720 synonymous SNV . 0 38 hm5C_associated_SNPs_15592 0 0 1 0 1 SLC4A1AP chr2:27900791 5'GT 27900791 Upstream 72bp
chr9 131843433 131843433 1 + C G BLCA 131843453 + 131843433 131843473 41 CGCTCCCCGCTTCATGGCGGCCGGTGACCCTCACCCACGTC GGCTCCCCGCTTCATGGCGGCCGGTGACCCTCACCCACGTC < 41bp 1 0.383712918081589 1 0.396412432193756 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131843453 chr9:131843433 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_15593 0 0 1 0 1 DOLPP1 chr9:131843486 5'GT 131843486 Upstream 54bp
chr1 173819576 173819576 1 + G T BLCA 173819569 + 173819549 173819589 41 TTAATCAGACTAATGGAGACCCAAGAGGAAGATGTGGTCCT TTAATCAGACTAATGGAGACCCAAGAGTAAGATGTGGTCCT < 41bp 1 0.155609342828337 1 0.400836795568466 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DARS2 ENSG00000117593 CDS Human protein_coding chr1:173819569 chr1:173819576 stopgain 0.905 0 28 hm5C_associated_SNPs_15594 0 0 1 0 1 DARS2 chr1:173819617 5'GT 173819617 Upstream 42bp
chr3 183435476 183435476 1 + C G BLCA 183435490 + 183435470 183435510 41 TATTATCAAAGAACAGTTTGCTCTTGAAATGAAGAATAAGG TATTATGAAAGAACAGTTTGCTCTTGAAATGAAGAATAAGG < 41bp 1 0.0619390023721982 1 0.0602583289146423 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183435490 chr3:183435476 nonsynonymous SNV 0.992 4 7 hm5C_associated_SNPs_15595 0 0 1 0 2 YEATS2 chr3:183435439 3'AG 183435439 Downstream 38bp
chr3 183435476 183435476 1 + C G BLCA 183435490 + 183435470 183435510 41 TATTATCAAAGAACAGTTTGCTCTTGAAATGAAGAATAAGG TATTATGAAAGAACAGTTTGCTCTTGAAATGAAGAATAAGG < 41bp 1 0.0619390023721982 1 0.0602583289146423 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183435490 chr3:183435476 nonsynonymous SNV 0.992 4 7 hm5C_associated_SNPs_15595 0 0 1 0 2 YEATS2 chr3:183435536 5'GT 183435536 Upstream 61bp
chr6 53785424 53785424 1 + G A BLCA 53785428 + 53785408 53785448 41 TCTTTGTCACTGCAGAGAATCTGCCTCGCTGTGGTGCACTG TCTTTGTCACTGCAGAAAATCTGCCTCGCTGTGGTGCACTG < 41bp 1 0.528792173048753 1 0.158787965774536 experiment 0.942415653902494 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53785428 chr6:53785424 synonymous SNV . 0 17 hm5C_associated_SNPs_15597 0 0 1 0 1 LRRC1 chr6:53785423 3'AG 53785423 Downstream 2bp
chr1 233482330 233482330 1 + C G BLCA 233482335 + 233482315 233482355 41 GGCCCCCGAAGTGATCAAGTCTTCCTTGTTTTCTAAGGGAA GGCCCCCGAAGTGATGAAGTCTTCCTTGTTTTCTAAGGGAA < 41bp 1 0.163812621844392 1 0.0660922825336456 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233482335 chr1:233482330 nonsynonymous SNV 0.998 5 16 hm5C_associated_SNPs_15599 0 0 1 0 1 MAP3K21 chr1:233482368 5'GT 233482368 Upstream 39bp
chr2 219679356 219679356 1 + G C BLCA 219679360 + 219679340 219679380 41 CCCCACCGCTGGCTGAGAAACAGCCAGCCTGCTACCCCCAG CCCCACCGCTGGCTGACAAACAGCCAGCCTGCTACCCCCAG < 41bp 1 0.508308983732932 1 0.371563732624054 experiment 0.983382032534135 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219679360 chr2:219679356 nonsynonymous SNV 0.095 3 17 hm5C_associated_SNPs_15602 0 0 1 0 1 CYP27A1 chr2:219679268 3'AG 219679268 Downstream 89bp
chr20 42249548 42249548 1 + G A BLCA 42249532 + 42249512 42249552 41 TGGCTCACGACAGGAGACATCCACCTAAACCAGATTGATGC TGGCTCACGACAGGAGACATCCACCTAAACCAGATTAATGC < 41bp 1 0.124722943253865 1 0.0853811204433441 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFT52 ENSG00000101052 CDS Human protein_coding chr20:42249532 chr20:42249548 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_15603 0 0 1 3 1 IFT52 chr20:42249497 3'AG 42249497 Downstream 52bp
chr11 9597639 9597639 1 + G C BLCA 9597628 + 9597608 9597648 41 GTGTCGTCGTAGAAAGAGAACGTATTGGAATGAGTAAGTCG GTGTCGTCGTAGAAAGAGAACGTATTGGAATCAGTAAGTCG < 41bp 1 0.0730052980301471 1 0.0923528075218201 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WEE1 ENSG00000166483 CDS Human protein_coding chr11:9597628 chr11:9597639 nonsynonymous SNV 0.994 2 32 hm5C_associated_SNPs_15606 0 0 1 0 1 WEE1 chr11:9597640 5'GT 9597640 Upstream 2bp
chr19 6177350 6177350 1 + C G BLCA 6177336 + 6177316 6177356 41 CACTCAGCCATATTGCAGCACAGATGATGGACATCTGGGTA CACTCAGCCATATTGCAGCACAGATGATGGACATGTGGGTA < 41bp 1 0.378818671736065 1 0.0886440277099609 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ACSBG2 ENSG00000130377 CDS Human protein_coding chr19:6177336 chr19:6177350 nonsynonymous SNV 0.658 0 35 hm5C_associated_SNPs_15607 0 0 0 0 1 ACSBG2 chr19:6177407 5'GT 6177407 Upstream 58bp
chr12 57552351 57552351 1 + C T BLCA 57552333 + 57552313 57552353 41 CTGGACTTCCACGCTGAGACCGGCTTCATCTACTTTGCCGA CTGGACTTCCACGCTGAGACCGGCTTCATCTACTTTGCTGA < 41bp 1 0.114612134637463 1 0.414411842823029 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57552333 chr12:57552351 synonymous SNV . 0 39 hm5C_associated_SNPs_15608 0 0 0 0 1 LRP1 chr12:57552421 5'GT 57552421 Upstream 71bp
chr1 156096689 156096689 1 + G A BLCA 156096700 + 156096680 156096720 41 GACACGGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGG GACACGGGCAAAGCCAGGGTCTCCCCTGTGAGCACTAGAGG < 41bp 1 0.165018437480755 1 0.242534965276718 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096700 chr1:156096689 synonymous SNV . 0 10 hm5C_associated_SNPs_15609 0 0 0 0 1 LMNA chr1:156096706 5'GT 156096706 Upstream 18bp
chr1 156096689 156096689 1 + G A BLCA 156096703 + 156096683 156096723 41 ACGGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATT ACGGGCAAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATT < 41bp 1 0.12155577754545 1 0.0751314759254456 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096703 chr1:156096689 synonymous SNV . 0 7 hm5C_associated_SNPs_15610 0 0 0 0 1 LMNA chr1:156096706 5'GT 156096706 Upstream 18bp
chr1 156096689 156096689 1 + G A BLCA 156096704 + 156096684 156096724 41 CGGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTT CGGGCAAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTT < 41bp 1 0.175405711743292 1 0.0656973123550415 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096704 chr1:156096689 synonymous SNV . 0 6 hm5C_associated_SNPs_15611 0 0 0 0 1 LMNA chr1:156096706 5'GT 156096706 Upstream 18bp
chr1 156096689 156096689 1 + G A BLCA 156096705 + 156096685 156096725 41 GGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTTC GGGCAAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTTC < 41bp 1 0.375386321382058 1 0.104095935821533 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096705 chr1:156096689 synonymous SNV . 0 5 hm5C_associated_SNPs_15612 0 0 0 0 1 LMNA chr1:156096706 5'GT 156096706 Upstream 18bp
chr19 56172438 56172438 1 + C T BLCA 56172435 + 56172415 56172455 41 ATTCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGG ATTCCAGCCACTGCTCTTCTCCCTACCATGACCCCTGACGG < 41bp 1 0.385846369411321 1 0.417290925979614 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172435 chr19:56172438 synonymous SNV . 0 24 hm5C_associated_SNPs_15613 0 0 1 0 1 U2AF2 chr19:56172404 3'AG 56172404 Downstream 35bp
chr19 56172438 56172438 1 + C T BLCA 56172437 + 56172417 56172457 41 TCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGGTC TCCAGCCACTGCTCTTCTCCCTACCATGACCCCTGACGGTC < 41bp 1 0.385147590135088 1 0.108659416437149 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172437 chr19:56172438 synonymous SNV . 0 22 hm5C_associated_SNPs_15614 0 0 1 0 1 U2AF2 chr19:56172404 3'AG 56172404 Downstream 35bp
chr8 37630287 37630287 1 + T G BLCA 37630300 + 37630280 37630320 41 CAATCTCTTCATGCTGGAAACAGTGGATTCTGTGAAGTTGG CAATCTCGTCATGCTGGAAACAGTGGATTCTGTGAAGTTGG < 41bp 1 0.448649620252033 1 0.322691172361374 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLPBP ENSG00000147471 CDS Human protein_coding chr8:37630300 chr8:37630287 nonsynonymous SNV 0.998 0 8 hm5C_associated_SNPs_15617 0 0 1 0 1 PLPBP chr8:37630273 3'AG 37630273 Downstream 15bp
chr15 81199027 81199027 1 + G C BLCA 81199009 + 81198989 81199029 41 CCCTTTCTGCCCTAGGGAAACCAATGTACCTGCACATCGGG CCCTTTCTGCCCTAGGGAAACCAATGTACCTGCACATCCGG < 41bp 1 0.115614887474029 1 0.0632162988185883 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81199009 chr15:81199027 nonsynonymous SNV 0.977 2 39 hm5C_associated_SNPs_15618 0 0 0 0 1 CEMIP chr15:81199004 3'AG 81199004 Downstream 24bp
chr9 93624499 93624499 1 + G A BLCA 93624497 + 93624477 93624517 41 CTCTCTTCTAGGATCCGAGCCAGAGACAACAACGGCTCCTA CTCTCTTCTAGGATCCGAGCCAAAGACAACAACGGCTCCTA < 41bp 1 0.390639070050607 1 0.82882833480835 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYK ENSG00000165025 CDS Human protein_coding chr9:93624497 chr9:93624499 nonsynonymous SNV 0.982 1 23 hm5C_associated_SNPs_15619 0 0 0 0 1 SYK chr9:93624488 3'AG 93624488 Downstream 12bp
chr4 41262687 41262687 1 + G C BLCA 41262672 + 41262652 41262692 41 TTACATTCGCAGCATGAGAACTTCAGGAAAAAGCAGATTGA TTACATTCGCAGCATGAGAACTTCAGGAAAAAGCACATTGA < 41bp 1 0.382234360361059 1 0.250367403030396 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UCHL1 ENSG00000154277 CDS Human protein_coding chr4:41262672 chr4:41262687 nonsynonymous SNV 0.954 4 36 hm5C_associated_SNPs_15620 0 0 1 0 1 UCHL1 chr4:41262664 3'AG 41262664 Downstream 24bp
chr3 52233298 52233298 1 + T G BLCA 52233278 + 52233258 52233298 41 ATGGAGAGTGTTGTTCGCCGCTGCCCATTCTTATCCCGAGT ATGGAGAGTGTTGTTCGCCGCTGCCCATTCTTATCCCGAGG < 41bp 1 0.36767548914495 1 0.256709605455399 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233278 chr3:52233298 nonsynonymous SNV 0.963 2 41 hm5C_associated_SNPs_15621 0 0 1 0 2 ALAS1 chr3:52233226 3'AG 52233226 Downstream 73bp
chr3 52233298 52233298 1 + T G BLCA 52233278 + 52233258 52233298 41 ATGGAGAGTGTTGTTCGCCGCTGCCCATTCTTATCCCGAGT ATGGAGAGTGTTGTTCGCCGCTGCCCATTCTTATCCCGAGG < 41bp 1 0.36767548914495 1 0.256709605455399 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233278 chr3:52233298 nonsynonymous SNV 0.963 2 41 hm5C_associated_SNPs_15621 0 0 1 0 2 ALAS1 chr3:52233237 3'AG 52233237 Downstream 62bp
chr11 68363635 68363635 1 + G A BLCA 68363639 + 68363619 68363659 41 AAAGCAAGACTTGTTTGAACCCAGCAGTGCCAACACGGAGG AAAGCAAGACTTGTTTAAACCCAGCAGTGCCAACACGGAGG < 41bp 1 0.281769292236855 1 0.318532079458237 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68363639 chr11:68363635 nonsynonymous SNV 0.904 0 17 hm5C_associated_SNPs_15631 0 0 1 0 2 PPP6R3 chr11:68363565 3'AG 68363565 Downstream 71bp
chr11 68363635 68363635 1 + G A BLCA 68363639 + 68363619 68363659 41 AAAGCAAGACTTGTTTGAACCCAGCAGTGCCAACACGGAGG AAAGCAAGACTTGTTTAAACCCAGCAGTGCCAACACGGAGG < 41bp 1 0.281769292236855 1 0.318532079458237 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68363639 chr11:68363635 nonsynonymous SNV 0.904 0 17 hm5C_associated_SNPs_15631 0 0 1 0 2 PPP6R3 chr11:68363686 5'GT 68363686 Upstream 52bp
chr15 41865267 41865267 1 + C T BLCA 41865260 + 41865240 41865280 41 TTGCCTGCGGCATGGAGTACCTGAGCTCTCGGAACTTCATC TTGCCTGCGGCATGGAGTACCTGAGCTTTCGGAACTTCATC < 41bp 1 0.490514849040709 1 0.15782967209816 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41865260 chr15:41865267 nonsynonymous SNV 0.998 3 28 hm5C_associated_SNPs_15632 0 0 1 0 2 TYRO3 chr15:41865200 3'AG 41865200 Downstream 68bp
chr15 41865267 41865267 1 + C T BLCA 41865260 + 41865240 41865280 41 TTGCCTGCGGCATGGAGTACCTGAGCTCTCGGAACTTCATC TTGCCTGCGGCATGGAGTACCTGAGCTTTCGGAACTTCATC < 41bp 1 0.490514849040709 1 0.15782967209816 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41865260 chr15:41865267 nonsynonymous SNV 0.998 3 28 hm5C_associated_SNPs_15632 0 0 1 0 2 TYRO3 chr15:41865309 5'GT 41865309 Upstream 43bp
chr9 33026956 33026956 1 + G A BLCA 33026973 + 33026953 33026993 41 TTGGAGGAGGAGGAAGGATGCAGAGAGAAAGGAGAGGTAAG TTGAAGGAGGAGGAAGGATGCAGAGAGAAAGGAGAGGTAAG < 41bp 1 0.650545885138641 1 0.81051504611969 experiment 0.698908229722718 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DNAJA1 ENSG00000086061 CDS Human protein_coding chr9:33026973 chr9:33026956 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_15633 0 0 1 0 1 DNAJA1 chr9:33026988 5'GT 33026988 Upstream 33bp
chr3 10127604 10127604 1 + C T BLCA 10127599 + 10127579 10127619 41 ACAGCCAGCCTTTGGAGGAACTACTCAGGTGAGTCATAACT ACAGCCAGCCTTTGGAGGAACTACTTAGGTGAGTCATAACT < 41bp 1 0.197529092958066 1 0.121427029371262 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10127599 chr3:10127604 synonymous SNV . 0 26 hm5C_associated_SNPs_15635 0 0 0 0 1 FANCD2 chr3:10127606 5'GT 10127606 Upstream 3bp
chr19 1461114 1461114 1 + G T BLCA 1461096 + 1461076 1461116 41 ACATCAACAGCAAGAAGGTGCTGAGGGAGGCGGGCAGCGTG ACATCAACAGCAAGAAGGTGCTGAGGGAGGCGGGCAGCTTG < 41bp 1 0.258060484757312 1 0.351279199123383 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APC2 ENSG00000115266 CDS Human protein_coding chr19:1461096 chr19:1461114 nonsynonymous SNV 0.841 2 39 hm5C_associated_SNPs_15640 0 0 0 0 2 APC2 chr19:1461036 3'AG 1461036 Downstream 79bp
chr19 1461114 1461114 1 + G T BLCA 1461096 + 1461076 1461116 41 ACATCAACAGCAAGAAGGTGCTGAGGGAGGCGGGCAGCGTG ACATCAACAGCAAGAAGGTGCTGAGGGAGGCGGGCAGCTTG < 41bp 1 0.258060484757312 1 0.351279199123383 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APC2 ENSG00000115266 CDS Human protein_coding chr19:1461096 chr19:1461114 nonsynonymous SNV 0.841 2 39 hm5C_associated_SNPs_15640 0 0 0 0 2 APC2 chr19:1461152 5'GT 1461152 Upstream 39bp
chr18 29171903 29171903 1 + G A BLCA 29171892 + 29171872 29171912 41 TCTCATCGTCTGCTCCTCCTCTGCCTTGCTGGACTGGTATT TCTCATCGTCTGCTCCTCCTCTGCCTTGCTGAACTGGTATT < 41bp 1 0.489400246165403 1 0.118999660015106 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTR ENSG00000118271 CDS Human protein_coding chr18:29171892 chr18:29171903 nonsynonymous SNV 0.992 3 32 hm5C_associated_SNPs_15641 0 0 1 0 1 TTR chr18:29171934 5'GT 29171934 Upstream 32bp
chr14 61285476 61285476 1 + C T BLCA 61285479 + 61285459 61285499 41 TTGCTCTGCTTTTGGCTCAGCATAAAGATAGATCTACCCAA TTGCTCTGCTTTTGGCTTAGCATAAAGATAGATCTACCCAA < 41bp 1 0.455865976283274 1 0.217152744531631 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61285479 chr14:61285476 stopgain 1.000 1 18 hm5C_associated_SNPs_15644 0 0 1 0 2 MNAT1 chr14:61285440 3'AG 61285440 Downstream 37bp
chr14 61285476 61285476 1 + C T BLCA 61285479 + 61285459 61285499 41 TTGCTCTGCTTTTGGCTCAGCATAAAGATAGATCTACCCAA TTGCTCTGCTTTTGGCTTAGCATAAAGATAGATCTACCCAA < 41bp 1 0.455865976283274 1 0.217152744531631 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61285479 chr14:61285476 stopgain 1.000 1 18 hm5C_associated_SNPs_15644 0 0 1 0 2 MNAT1 chr14:61285565 5'GT 61285565 Upstream 90bp
chr19 10571772 10571772 1 + C T BLCA 10571761 + 10571741 10571781 41 ATCACCCTGGGGTCTCCAACCAGTTCCTCATCAACACCAGT ATCACCCTGGGGTCTCCAACCAGTTCCTCATTAACACCAGT < 41bp 1 0.14060227456753 1 0.702729821205139 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10571761 chr19:10571772 stopgain . 0 32 hm5C_associated_SNPs_15645 0 0 0 0 2 PDE4A chr19:10571680 3'AG 10571680 Downstream 93bp
chr19 10571772 10571772 1 + C T BLCA 10571761 + 10571741 10571781 41 ATCACCCTGGGGTCTCCAACCAGTTCCTCATCAACACCAGT ATCACCCTGGGGTCTCCAACCAGTTCCTCATTAACACCAGT < 41bp 1 0.14060227456753 1 0.702729821205139 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10571761 chr19:10571772 stopgain . 0 32 hm5C_associated_SNPs_15645 0 0 0 0 2 PDE4A chr19:10571779 5'GT 10571779 Upstream 8bp
chr12 120876184 120876184 1 + C G BLCA 120876203 + 120876183 120876223 41 TCGCATGTGGAAGACTCTCACCTTCTTCGTCGCGCTCCCCG TGGCATGTGGAAGACTCTCACCTTCTTCGTCGCGCTCCCCG < 41bp 1 0.086031256281793 1 0.0500719249248505 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COX6A1 ENSG00000111775;ENSG00000111780 CDS Human other chr12:120876203 chr12:120876184 nonsynonymous SNV 0.990 1 2 hm5C_associated_SNPs_15646 0 0 1 0 1 COX6A1 chr12:120876182 3'AG 120876182 Downstream 3bp
chr14 64990098 64990098 1 + G C BLCA 64990092 + 64990072 64990112 41 GAGAGCGTCAGTTGCGACTGCACAATGATATGCACAAAGGC GAGAGCGTCAGTTGCGACTGCACAATCATATGCACAAAGGC < 41bp 1 0.605557940302503 1 0.636806130409241 experiment 0.788884119394993 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZBTB1 ENSG00000126804 CDS Human protein_coding chr14:64990092 chr14:64990098 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_15647 0 0 0 0 1 ZBTB1 chr14:64990120 5'GT 64990120 Upstream 23bp
chr1 248039263 248039263 1 + C T BLCA 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGAGTCTGCTCTTGACCGCCGACCTGCGTAGTGTGCA < 41bp 1 0.715822245906445 1 0.291561663150787 experiment 0.568355508187109 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039263 synonymous SNV . 0 33 hm5C_associated_SNPs_15648 0 0 0 0 2 TRIM58 chr1:248039202 3'AG 248039202 Downstream 62bp
chr1 248039263 248039263 1 + C T BLCA 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGAGTCTGCTCTTGACCGCCGACCTGCGTAGTGTGCA < 41bp 1 0.715822245906445 1 0.291561663150787 experiment 0.568355508187109 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039263 synonymous SNV . 0 33 hm5C_associated_SNPs_15648 0 0 0 0 2 TRIM58 chr1:248039339 5'GT 248039339 Upstream 77bp
chr2 105959589 105959589 1 + C T BLCA 105959573 + 105959553 105959593 41 AACAGAACCATGACTTAACGCATAGGAAAAGTCCTTCAGGC AACAGAACCATGACTTAACGCATAGGAAAAGTCCTTTAGGC < 41bp 1 0.441057569529572 1 0.479640066623688 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C2orf49 ENSG00000135974 CDS Human protein_coding chr2:105959573 chr2:105959589 nonsynonymous SNV 0.691 0 37 hm5C_associated_SNPs_15649 0 0 1 0 2 C2orf49 chr2:105959558 3'AG 105959558 Downstream 32bp
chr2 105959589 105959589 1 + C T BLCA 105959573 + 105959553 105959593 41 AACAGAACCATGACTTAACGCATAGGAAAAGTCCTTCAGGC AACAGAACCATGACTTAACGCATAGGAAAAGTCCTTTAGGC < 41bp 1 0.441057569529572 1 0.479640066623688 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C2orf49 ENSG00000135974 CDS Human protein_coding chr2:105959573 chr2:105959589 nonsynonymous SNV 0.691 0 37 hm5C_associated_SNPs_15649 0 0 1 0 2 C2orf49 chr2:105959680 5'GT 105959680 Upstream 92bp
chr11 107968457 107968457 1 + C T BLCA 107968473 + 107968453 107968493 41 TTCTCAGTGAACCAGGAGTTCAGTTTAATGTAAGCTCGTTA TTCTTAGTGAACCAGGAGTTCAGTTTAATGTAAGCTCGTTA < 41bp 1 0.247137437060172 1 0.16225004196167 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL5 ENSG00000166266 CDS Human protein_coding chr11:107968473 chr11:107968457 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_15651 0 0 1 0 2 CUL5 chr11:107968363 3'AG 107968363 Downstream 95bp
chr11 107968457 107968457 1 + C T BLCA 107968473 + 107968453 107968493 41 TTCTCAGTGAACCAGGAGTTCAGTTTAATGTAAGCTCGTTA TTCTTAGTGAACCAGGAGTTCAGTTTAATGTAAGCTCGTTA < 41bp 1 0.247137437060172 1 0.16225004196167 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL5 ENSG00000166266 CDS Human protein_coding chr11:107968473 chr11:107968457 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_15651 0 0 1 0 2 CUL5 chr11:107968481 5'GT 107968481 Upstream 25bp
chr3 141006166 141006166 1 + C T BLCA 141006161 + 141006141 141006181 41 CTATCATCTCTCTAGGAAACCGTATCACCCAAAACTGGAAG CTATCATCTCTCTAGGAAACCGTATTACCCAAAACTGGAAG < 41bp 1 0.14895350388439 1 0.0990951955318451 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PXYLP1 ENSG00000155893 CDS Human protein_coding chr3:141006161 chr3:141006166 nonsynonymous SNV 0.992 3 26 hm5C_associated_SNPs_15652 0 0 0 0 1 PXYLP1 chr3:141006156 3'AG 141006156 Downstream 11bp
chr6 53660187 53660187 1 + G C BLCA 53660192 + 53660172 53660212 41 GAGCTGCTGCTGGACGCCAACCAGCTCCGCGAGCTGCCCGA GAGCTGCTGCTGGACCCCAACCAGCTCCGCGAGCTGCCCGA < 41bp 1 0.471840914441678 1 0.466221153736115 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53660192 chr6:53660187 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_15653 0 0 0 0 1 LRRC1 chr6:53660213 5'GT 53660213 Upstream 27bp
chr9 131843464 131843464 1 + C T BLCA 131843453 + 131843433 131843473 41 CGCTCCCCGCTTCATGGCGGCCGGTGACCCTCACCCACGTC CGCTCCCCGCTTCATGGCGGCCGGTGACCCTTACCCACGTC < 41bp 1 0.369752628077139 1 0.608356654644012 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131843453 chr9:131843464 synonymous SNV . 0 32 hm5C_associated_SNPs_15654 0 0 1 0 1 DOLPP1 chr9:131843486 5'GT 131843486 Upstream 23bp
chr20 49195795 49195795 1 + G A BLCA 49195806 + 49195786 49195826 41 CAGACAGCCGACCAGCTGCGCTTCTCCTACCTGGCTGTGAT CAGACAGCCAACCAGCTGCGCTTCTCCTACCTGGCTGTGAT < 41bp 1 0.075402106496514 1 0.0422307550907135 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49195806 chr20:49195795 nonsynonymous SNV 0.813 4 10 hm5C_associated_SNPs_15655 0 0 1 0 2 PTPN1 chr20:49195705 3'AG 49195705 Downstream 91bp
chr20 49195795 49195795 1 + G A BLCA 49195806 + 49195786 49195826 41 CAGACAGCCGACCAGCTGCGCTTCTCCTACCTGGCTGTGAT CAGACAGCCAACCAGCTGCGCTTCTCCTACCTGGCTGTGAT < 41bp 1 0.075402106496514 1 0.0422307550907135 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49195806 chr20:49195795 nonsynonymous SNV 0.813 4 10 hm5C_associated_SNPs_15655 0 0 1 0 2 PTPN1 chr20:49195866 5'GT 49195866 Upstream 72bp
chr5 141524185 141524185 1 + G C BLCA 141524180 + 141524160 141524200 41 TTATCAATTATGCAAAAGTTCGGAAGATGCCAGAAACTTTC TTATCAATTATGCAAAAGTTCGGAACATGCCAGAAACTTTC < 41bp 1 0.747594070336729 1 0.698565542697906 experiment 0.504811859326542 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control NDFIP1 ENSG00000131507 CDS Human protein_coding chr5:141524180 chr5:141524185 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_15656 0 0 1 0 2 NDFIP1 chr5:141524136 3'AG 141524136 Downstream 50bp
chr5 141524185 141524185 1 + G C BLCA 141524180 + 141524160 141524200 41 TTATCAATTATGCAAAAGTTCGGAAGATGCCAGAAACTTTC TTATCAATTATGCAAAAGTTCGGAACATGCCAGAAACTTTC < 41bp 1 0.747594070336729 1 0.698565542697906 experiment 0.504811859326542 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control NDFIP1 ENSG00000131507 CDS Human protein_coding chr5:141524180 chr5:141524185 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_15656 0 0 1 0 2 NDFIP1 chr5:141524241 5'GT 141524241 Upstream 57bp
chr12 108086623 108086623 1 + C G BLCA 108086612 + 108086592 108086632 41 TGCTGAGACTCTTGGTGAATCTCTCTTGGGTCTTACGGTCT TGCTGAGACTCTTGGTGAATCTCTCTTGGGTGTTACGGTCT < 41bp 1 0.290726522198483 1 0.0710243880748749 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PWP1 ENSG00000136045 CDS Human protein_coding chr12:108086612 chr12:108086623 nonsynonymous SNV 0.993 3 32 hm5C_associated_SNPs_15667 0 0 1 0 2 PWP1 chr12:108086591 3'AG 108086591 Downstream 33bp
chr12 108086623 108086623 1 + C G BLCA 108086612 + 108086592 108086632 41 TGCTGAGACTCTTGGTGAATCTCTCTTGGGTCTTACGGTCT TGCTGAGACTCTTGGTGAATCTCTCTTGGGTGTTACGGTCT < 41bp 1 0.290726522198483 1 0.0710243880748749 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PWP1 ENSG00000136045 CDS Human protein_coding chr12:108086612 chr12:108086623 nonsynonymous SNV 0.993 3 32 hm5C_associated_SNPs_15667 0 0 1 0 2 PWP1 chr12:108086676 5'GT 108086676 Upstream 54bp
chr12 108086623 108086623 1 + C G BLCA 108086614 + 108086594 108086634 41 CTGAGACTCTTGGTGAATCTCTCTTGGGTCTTACGGTCTAC CTGAGACTCTTGGTGAATCTCTCTTGGGTGTTACGGTCTAC < 41bp 1 0.514860862986989 1 0.1542908847332 experiment 0.970278274026022 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PWP1 ENSG00000136045 CDS Human protein_coding chr12:108086614 chr12:108086623 nonsynonymous SNV 0.993 3 30 hm5C_associated_SNPs_15668 0 0 1 0 2 PWP1 chr12:108086591 3'AG 108086591 Downstream 33bp
chr12 108086623 108086623 1 + C G BLCA 108086614 + 108086594 108086634 41 CTGAGACTCTTGGTGAATCTCTCTTGGGTCTTACGGTCTAC CTGAGACTCTTGGTGAATCTCTCTTGGGTGTTACGGTCTAC < 41bp 1 0.514860862986989 1 0.1542908847332 experiment 0.970278274026022 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PWP1 ENSG00000136045 CDS Human protein_coding chr12:108086614 chr12:108086623 nonsynonymous SNV 0.993 3 30 hm5C_associated_SNPs_15668 0 0 1 0 2 PWP1 chr12:108086676 5'GT 108086676 Upstream 54bp
chr12 108086623 108086623 1 + C G BLCA 108086616 + 108086596 108086636 41 GAGACTCTTGGTGAATCTCTCTTGGGTCTTACGGTCTACGG GAGACTCTTGGTGAATCTCTCTTGGGTGTTACGGTCTACGG < 41bp 1 0.760050943895334 1 0.364143550395966 experiment 0.479898112209333 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PWP1 ENSG00000136045 CDS Human protein_coding chr12:108086616 chr12:108086623 nonsynonymous SNV 0.993 3 28 hm5C_associated_SNPs_15669 0 0 1 0 2 PWP1 chr12:108086591 3'AG 108086591 Downstream 33bp
chr12 108086623 108086623 1 + C G BLCA 108086616 + 108086596 108086636 41 GAGACTCTTGGTGAATCTCTCTTGGGTCTTACGGTCTACGG GAGACTCTTGGTGAATCTCTCTTGGGTGTTACGGTCTACGG < 41bp 1 0.760050943895334 1 0.364143550395966 experiment 0.479898112209333 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PWP1 ENSG00000136045 CDS Human protein_coding chr12:108086616 chr12:108086623 nonsynonymous SNV 0.993 3 28 hm5C_associated_SNPs_15669 0 0 1 0 2 PWP1 chr12:108086676 5'GT 108086676 Upstream 54bp
chr11 985542 985542 1 + G A BLCA 985545 + 985525 985565 41 CCAACGCGAAGAATGCCGTGCTCTTCGAGGCCATCAGCTTA CCAACGCGAAGAATGCCATGCTCTTCGAGGCCATCAGCTTA < 41bp 1 0.0815644148643367 1 0.0834944248199463 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:985545 chr11:985542 nonsynonymous SNV 0.921 3 18 hm5C_associated_SNPs_15670 0 0 1 0 1 AP2A2 chr11:985582 5'GT 985582 Upstream 41bp
chr3 160122125 160122125 1 + G A BLCA 160122141 + 160122121 160122161 41 GGATGATTATGAAGTCATTCCTAACAGTAATTTCTATGTAT GGATAATTATGAAGTCATTCCTAACAGTAATTTCTATGTAT < 41bp 1 0.111115985521757 1 0.0568875074386597 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160122141 chr3:160122125 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_15672 0 0 1 2 1 SMC4 chr3:160122116 3'AG 160122116 Downstream 10bp
chr6 42975942 42975942 1 + C T BLCA 42975958 + 42975938 42975978 41 GGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGAG GGTTTATCTACGAGACGGAGCATCACAACGGGATTGCTGAG < 41bp 1 0.287111793976404 1 0.0891509652137756 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975958 chr6:42975942 synonymous SNV . 0 5 hm5C_associated_SNPs_15673 0 0 1 0 2 PPP2R5D chr6:42975939 3'AG 42975939 Downstream 4bp
chr6 42975942 42975942 1 + C T BLCA 42975958 + 42975938 42975978 41 GGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGAG GGTTTATCTACGAGACGGAGCATCACAACGGGATTGCTGAG < 41bp 1 0.287111793976404 1 0.0891509652137756 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975958 chr6:42975942 synonymous SNV . 0 5 hm5C_associated_SNPs_15673 0 0 1 0 2 PPP2R5D chr6:42975998 5'GT 42975998 Upstream 57bp
chr16 23700835 23700835 1 + C T BLCA 23700824 + 23700804 23700844 41 TTTTCATCCAGATCACCCTCCTTAAATATTTCCGCAATTAC TTTTCATCCAGATCACCCTCCTTAAATATTTTCGCAATTAC < 41bp 1 0.124146816606052 1 0.326046615839005 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700824 chr16:23700835 synonymous SNV . 0 32 hm5C_associated_SNPs_15675 0 0 1 0 1 PLK1 chr16:23700815 3'AG 23700815 Downstream 21bp
chr1 10231366 10231366 1 + G A BLCA 10231351 + 10231331 10231371 41 GATATTTACTTACAGCTGGACTGTGCTCGGTTCGCGAAAGC GATATTTACTTACAGCTGGACTGTGCTCGGTTCGCAAAAGC < 41bp 1 0.212574145664583 1 0.182148396968842 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10231351 chr1:10231366 synonymous SNV . 0 36 hm5C_associated_SNPs_15677 0 0 1 0 1 UBE4B chr1:10231387 5'GT 10231387 Upstream 22bp
chr18 13096282 13096282 1 + C T BLCA 13096273 + 13096253 13096293 41 CTGGCCAGCGCATTGCCTCACAGTCACGCCGCAGCATGGAT CTGGCCAGCGCATTGCCTCACAGTCACGCTGCAGCATGGAT < 41bp 1 0.0894302610939849 1 0.0655702650547028 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13096273 chr18:13096282 nonsynonymous SNV 0.647 4 30 hm5C_associated_SNPs_15678 0 0 1 0 1 CEP192 chr18:13096183 3'AG 13096183 Downstream 100bp
chr7 97833481 97833481 1 + C T BLCA 97833471 + 97833451 97833491 41 CCAGCTTTTCCCTCACACACCTGACCGACTCGGACATCGAG CCAGCTTTTCCCTCACACACCTGACCGACTTGGACATCGAG < 41bp 1 0.123509709346666 1 0.0536280572414398 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97833471 chr7:97833481 nonsynonymous SNV 0.970 5 31 hm5C_associated_SNPs_15679 0 0 0 0 1 LMTK2 chr7:97833498 5'GT 97833498 Upstream 18bp
chr1 161173249 161173249 1 + G C BLCA 161173246 + 161173226 161173266 41 GAGGTGTTCGGCAGTGGCAGCCAGATGTGGAATGGGCACAG GAGGTGTTCGGCAGTGGCAGCCACATGTGGAATGGGCACAG < 41bp 1 0.580016423819097 1 0.224104970693588 experiment 0.839967152361806 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161173246 chr1:161173249 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_15680 0 0 1 0 2 NDUFS2 chr1:161173193 3'AG 161173193 Downstream 57bp
chr1 161173249 161173249 1 + G C BLCA 161173246 + 161173226 161173266 41 GAGGTGTTCGGCAGTGGCAGCCAGATGTGGAATGGGCACAG GAGGTGTTCGGCAGTGGCAGCCACATGTGGAATGGGCACAG < 41bp 1 0.580016423819097 1 0.224104970693588 experiment 0.839967152361806 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161173246 chr1:161173249 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_15680 0 0 1 0 2 NDUFS2 chr1:161173333 5'GT 161173333 Upstream 85bp
chr12 104340409 104340409 1 + C G BLCA 104340419 + 104340399 104340439 41 CTATGCGAGTCAGAAGAAAACATTTGAAATTAATCCCAGAC CTATGCGAGTGAGAAGAAAACATTTGAAATTAATCCCAGAC < 41bp 1 0.119554618540551 1 0.199996650218964 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340419 chr12:104340409 nonsynonymous SNV 0.986 2 11 hm5C_associated_SNPs_15681 0 0 1 0 2 HSP90B1 chr12:104340396 3'AG 104340396 Downstream 14bp
chr12 104340409 104340409 1 + C G BLCA 104340419 + 104340399 104340439 41 CTATGCGAGTCAGAAGAAAACATTTGAAATTAATCCCAGAC CTATGCGAGTGAGAAGAAAACATTTGAAATTAATCCCAGAC < 41bp 1 0.119554618540551 1 0.199996650218964 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340419 chr12:104340409 nonsynonymous SNV 0.986 2 11 hm5C_associated_SNPs_15681 0 0 1 0 2 HSP90B1 chr12:104340474 5'GT 104340474 Upstream 66bp
chr19 11553317 11553317 1 + G C BLCA 11553302 + 11553282 11553322 41 GAGAAGCCAGAGAGAGAGGCCAAAGAGCAGCACCAGAAGCT GAGAAGCCAGAGAGAGAGGCCAAAGAGCAGCACCACAAGCT < 41bp 1 0.358948955893446 1 0.526552200317383 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553302 chr19:11553317 nonsynonymous SNV 0.999 0 36 hm5C_associated_SNPs_15682 0 0 1 0 1 PRKCSH chr19:11553330 5'GT 11553330 Upstream 14bp
chr19 11553317 11553317 1 + G C BLCA 11553314 + 11553294 11553334 41 AGAGAGGCCAAAGAGCAGCACCAGAAGCTGTGGGAAGGTAT AGAGAGGCCAAAGAGCAGCACCACAAGCTGTGGGAAGGTAT < 41bp 1 0.202457414927718 1 0.0786389112472534 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553314 chr19:11553317 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_15683 0 0 1 0 1 PRKCSH chr19:11553330 5'GT 11553330 Upstream 14bp
chr16 89759837 89759837 1 + C A BLCA 89759823 + 89759803 89759843 41 CAGCGGATTTCGGCCTGGCCCGGGCCTATGGTGTCCCAGTA CAGCGGATTTCGGCCTGGCCCGGGCCTATGGTGTACCAGTA < 41bp 1 0.572962095573195 1 0.800567746162415 experiment 0.854075808853609 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CDK10 ENSG00000185324 CDS Human protein_coding chr16:89759823 chr16:89759837 synonymous SNV . 0 35 hm5C_associated_SNPs_15684 0 0 1 0 2 CDK10 chr16:89759806 3'AG 89759806 Downstream 32bp
chr16 89759837 89759837 1 + C A BLCA 89759823 + 89759803 89759843 41 CAGCGGATTTCGGCCTGGCCCGGGCCTATGGTGTCCCAGTA CAGCGGATTTCGGCCTGGCCCGGGCCTATGGTGTACCAGTA < 41bp 1 0.572962095573195 1 0.800567746162415 experiment 0.854075808853609 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CDK10 ENSG00000185324 CDS Human protein_coding chr16:89759823 chr16:89759837 synonymous SNV . 0 35 hm5C_associated_SNPs_15684 0 0 1 0 2 CDK10 chr16:89759875 5'GT 89759875 Upstream 39bp
chr4 146576334 146576334 1 + C T BLCA 146576316 + 146576296 146576336 41 TAGGTAATTCGTATTTCTGCCCGAAGTGGAGAGGGGATCTC TAGGTAATTCGTATTTCTGCCCGAAGTGGAGAGGGGATTTC < 41bp 1 0.529676725745971 1 0.0799096822738647 experiment 0.940646548508059 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MMAA ENSG00000151611 CDS Human protein_coding chr4:146576316 chr4:146576334 synonymous SNV . 0 39 hm5C_associated_SNPs_15686 0 0 1 0 1 MMAA chr4:146576299 3'AG 146576299 Downstream 36bp
chr1 22336318 22336318 1 + C G BLCA 22336303 + 22336283 22336323 41 GCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTC GCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTGGAGTC < 41bp 1 0.177693775208565 1 0.314940214157104 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336303 chr1:22336318 nonsynonymous SNV 0.141 3 36 hm5C_associated_SNPs_15689 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 33bp
chr1 22336318 22336318 1 + C G BLCA 22336304 + 22336284 22336324 41 CTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCT CTGCAACTTCATCTGGAAGCCCACGGTGTTCACTGGAGTCT < 41bp 1 0.29026482695762 1 0.306048691272736 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336304 chr1:22336318 nonsynonymous SNV 0.141 3 35 hm5C_associated_SNPs_15690 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 33bp
chr1 22336318 22336318 1 + C G BLCA 22336305 + 22336285 22336325 41 TGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTC TGCAACTTCATCTGGAAGCCCACGGTGTTCACTGGAGTCTC < 41bp 1 0.762455524309439 1 0.430107891559601 experiment 0.475088951381121 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336305 chr1:22336318 nonsynonymous SNV 0.141 3 34 hm5C_associated_SNPs_15691 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 33bp
chr1 22336318 22336318 1 + C G BLCA 22336307 + 22336287 22336327 41 CAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCG CAACTTCATCTGGAAGCCCACGGTGTTCACTGGAGTCTCCG < 41bp 1 0.437407385372839 1 0.385585933923721 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336307 chr1:22336318 nonsynonymous SNV 0.141 3 32 hm5C_associated_SNPs_15692 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 33bp
chr1 22336318 22336318 1 + C G BLCA 22336314 + 22336294 22336334 41 ATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCAT ATCTGGAAGCCCACGGTGTTCACTGGAGTCTCCGCCTTCAT < 41bp 1 0.647506554762905 1 0.0790870189666748 experiment 0.70498689047419 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336314 chr1:22336318 nonsynonymous SNV 0.141 3 25 hm5C_associated_SNPs_15693 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 33bp
chr1 22336318 22336318 1 + C G BLCA 22336323 + 22336303 22336343 41 CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT CCCACGGTGTTCACTGGAGTCTCCGCCTTCATCGACTGGAT < 41bp 1 0.652543224685057 1 0.121916860342026 experiment 0.694913550629886 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336323 chr1:22336318 nonsynonymous SNV 0.141 3 16 hm5C_associated_SNPs_15694 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 33bp
chr1 22336318 22336318 1 + C G BLCA 22336326 + 22336306 22336346 41 ACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGA ACGGTGTTCACTGGAGTCTCCGCCTTCATCGACTGGATTGA < 41bp 1 0.457932627977563 1 0.0819307565689087 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336326 chr1:22336318 nonsynonymous SNV 0.141 3 13 hm5C_associated_SNPs_15695 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 33bp
chr1 22336318 22336318 1 + C G BLCA 22336329 + 22336309 22336349 41 GTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGA GTGTTCACTGGAGTCTCCGCCTTCATCGACTGGATTGAGGA < 41bp 1 0.412351980340831 1 0.771330595016479 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336329 chr1:22336318 nonsynonymous SNV 0.141 3 10 hm5C_associated_SNPs_15696 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 33bp
chr1 22336318 22336318 1 + C G BLCA 22336332 + 22336312 22336352 41 TTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGT TTCACTGGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGT < 41bp 1 0.387920613282472 1 0.315990775823593 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336332 chr1:22336318 nonsynonymous SNV 0.141 3 7 hm5C_associated_SNPs_15697 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 33bp
chr1 22336318 22336318 1 + C G BLCA 22336335 + 22336315 22336355 41 ACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGTGAG ACTGGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGTGAG < 41bp 1 0.650371810477745 1 0.478009760379791 experiment 0.699256379044511 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336335 chr1:22336318 nonsynonymous SNV 0.141 3 4 hm5C_associated_SNPs_15698 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 33bp
chr12 113730855 113730855 1 + C G BLCA 113730854 + 113730834 113730874 41 GTCACCAGGCTGCTGGAGACCCTCTCCCAGATGGAGAGATA GTCACCAGGCTGCTGGAGACCGTCTCCCAGATGGAGAGATA < 41bp 1 0.255137055767654 1 0.0863112807273865 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113730854 chr12:113730855 nonsynonymous SNV 0.946 0 22 hm5C_associated_SNPs_15701 0 0 1 0 1 TPCN1 chr12:113730878 5'GT 113730878 Upstream 24bp
chr19 30313232 30313232 1 + C T BLCA 30313222 + 30313202 30313242 41 TTGCTGCTTCGGCCTTGTATCATTTCTCGTCATCTGAATTG TTGCTGCTTCGGCCTTGTATCATTTCTCGTTATCTGAATTG < 41bp 1 0.0665790378905066 1 0.15515211224556 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30313222 chr19:30313232 nonsynonymous SNV 0.856 3 31 hm5C_associated_SNPs_15702 0 0 0 0 2 CCNE1 chr19:30313147 3'AG 30313147 Downstream 86bp
chr19 30313232 30313232 1 + C T BLCA 30313222 + 30313202 30313242 41 TTGCTGCTTCGGCCTTGTATCATTTCTCGTCATCTGAATTG TTGCTGCTTCGGCCTTGTATCATTTCTCGTTATCTGAATTG < 41bp 1 0.0665790378905066 1 0.15515211224556 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30313222 chr19:30313232 nonsynonymous SNV 0.856 3 31 hm5C_associated_SNPs_15702 0 0 0 0 2 CCNE1 chr19:30313258 5'GT 30313258 Upstream 27bp
chr11 46400035 46400035 1 + G A BLCA 46400025 + 46400005 46400045 41 AGGTGAAGAGCTGATTGAGGCTGCCAAGAGGAACGACTTCT AGGTGAAGAGCTGATTGAGGCTGCCAAGAGAAACGACTTCT < 41bp 1 0.178429484108132 1 0.116234719753265 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46400025 chr11:46400035 synonymous SNV . 0 31 hm5C_associated_SNPs_15703 0 0 1 0 2 DGKZ chr11:46400007 3'AG 46400007 Downstream 29bp
chr11 46400035 46400035 1 + G A BLCA 46400025 + 46400005 46400045 41 AGGTGAAGAGCTGATTGAGGCTGCCAAGAGGAACGACTTCT AGGTGAAGAGCTGATTGAGGCTGCCAAGAGAAACGACTTCT < 41bp 1 0.178429484108132 1 0.116234719753265 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46400025 chr11:46400035 synonymous SNV . 0 31 hm5C_associated_SNPs_15703 0 0 1 0 2 DGKZ chr11:46400050 5'GT 46400050 Upstream 16bp
chr11 46400035 46400035 1 + G A BLCA 46400038 + 46400018 46400058 41 ATTGAGGCTGCCAAGAGGAACGACTTCTGTAAGGTACTAGC ATTGAGGCTGCCAAGAGAAACGACTTCTGTAAGGTACTAGC < 41bp 1 0.243984677539571 1 0.410293281078339 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46400038 chr11:46400035 synonymous SNV . 0 18 hm5C_associated_SNPs_15704 0 0 1 0 2 DGKZ chr11:46400007 3'AG 46400007 Downstream 29bp
chr11 46400035 46400035 1 + G A BLCA 46400038 + 46400018 46400058 41 ATTGAGGCTGCCAAGAGGAACGACTTCTGTAAGGTACTAGC ATTGAGGCTGCCAAGAGAAACGACTTCTGTAAGGTACTAGC < 41bp 1 0.243984677539571 1 0.410293281078339 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46400038 chr11:46400035 synonymous SNV . 0 18 hm5C_associated_SNPs_15704 0 0 1 0 2 DGKZ chr11:46400050 5'GT 46400050 Upstream 16bp
chr20 31019208 31019208 1 + T G BLCA 31019221 + 31019201 31019241 41 GCCCTGATCAACTCTCGGACCTTCCATGCCTTACCATCACA GCCCTGAGCAACTCTCGGACCTTCCATGCCTTACCATCACA < 41bp 1 0.0873086757131766 1 0.0894524157047272 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31019221 chr20:31019208 nonsynonymous SNV 0.999 4 8 hm5C_associated_SNPs_15707 0 0 1 0 2 ASXL1 chr20:31019124 3'AG 31019124 Downstream 85bp
chr20 31019208 31019208 1 + T G BLCA 31019221 + 31019201 31019241 41 GCCCTGATCAACTCTCGGACCTTCCATGCCTTACCATCACA GCCCTGAGCAACTCTCGGACCTTCCATGCCTTACCATCACA < 41bp 1 0.0873086757131766 1 0.0894524157047272 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31019221 chr20:31019208 nonsynonymous SNV 0.999 4 8 hm5C_associated_SNPs_15707 0 0 1 0 2 ASXL1 chr20:31019287 5'GT 31019287 Upstream 80bp
chr14 52169290 52169290 1 + A C BLCA 52169280 + 52169260 52169300 41 ATCCACTTCCGTGTGCAGTACTATGTGGAAAATGGCAGATT ATCCACTTCCGTGTGCAGTACTATGTGGAACATGGCAGATT < 41bp 1 0.210463977049944 1 0.106976926326752 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52169280 chr14:52169290 nonsynonymous SNV 0.994 1 31 hm5C_associated_SNPs_15709 0 0 0 0 1 FRMD6 chr14:52169306 5'GT 52169306 Upstream 17bp
chr19 39109921 39109921 1 + G A BLCA 39109901 + 39109881 39109921 41 GCCCTGGTTGTGGAAGGCGACAGAAGTCATGGCGATGTTTG GCCCTGGTTGTGGAAGGCGACAGAAGTCATGGCGATGTTTA < 41bp 1 0.701082604006738 1 0.792171239852905 experiment 0.597834791986524 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39109901 chr19:39109921 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_15710 0 0 1 0 1 EIF3K chr19:39109967 5'GT 39109967 Upstream 47bp
chr1 55073615 55073615 1 + G A BLCA 55073619 + 55073599 55073639 41 CCCTTCCTTCACTCAGGGACCCCTATGTCATCGCGCTGAGG CCCTTCCTTCACTCAGAGACCCCTATGTCATCGCGCTGAGG < 41bp 1 0.148928264755579 1 0.038059264421463 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55073619 chr1:55073615 synonymous SNV . 0 17 hm5C_associated_SNPs_15711 0 0 0 0 1 ACOT11 chr1:55073615 3'AG 55073615 Downstream 1bp
chr1 161284213 161284213 1 + G A BLCA 161284211 + 161284191 161284231 41 CCAAGATGGCTGCGCTGTTGCTGAGGTGACTTCAGTGGGAC CCAAGATGGCTGCGCTGTTGCTAAGGTGACTTCAGTGGGAC < 41bp 1 0.788396036781434 1 0.37651914358139 experiment 0.423207926437132 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SDHC ENSG00000143252 CDS Human protein_coding chr1:161284211 chr1:161284213 synonymous SNV . 0 23 hm5C_associated_SNPs_15712 0 0 1 0 1 SDHC chr1:161284215 5'GT 161284215 Upstream 3bp
chr1 32782295 32782295 1 + G A BLCA 32782298 + 32782278 32782318 41 GCCAATGCTGAGGAGATGACCAAGTACCACAGCGATGACTA GCCAATGCTGAGGAGATAACCAAGTACCACAGCGATGACTA < 41bp 1 0.71037580012842 1 0.480706870555878 experiment 0.579248399743161 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32782298 chr1:32782295 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_15713 0 0 1 0 2 HDAC1 chr1:32782266 3'AG 32782266 Downstream 30bp
chr1 32782295 32782295 1 + G A BLCA 32782298 + 32782278 32782318 41 GCCAATGCTGAGGAGATGACCAAGTACCACAGCGATGACTA GCCAATGCTGAGGAGATAACCAAGTACCACAGCGATGACTA < 41bp 1 0.71037580012842 1 0.480706870555878 experiment 0.579248399743161 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32782298 chr1:32782295 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_15713 0 0 1 0 2 HDAC1 chr1:32782383 5'GT 32782383 Upstream 89bp
chr5 156786153 156786153 1 + C T BLCA 156786136 + 156786116 156786156 41 CTGTGGTCATGGAGGAACTGCTAAAGATTGTGAAGAGCTTG CTGTGGTCATGGAGGAACTGCTAAAGATTGTGAAGAGTTTG < 41bp 1 0.308195465641152 1 0.130009710788727 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156786136 chr5:156786153 synonymous SNV . 0 38 hm5C_associated_SNPs_15715 0 0 1 0 1 CYFIP2 chr5:156786156 5'GT 156786156 Upstream 4bp
chr6 31919363 31919363 1 + G A BLCA 31919375 + 31919355 31919395 41 GTTCACAAGAGAAGTCGTTTCATTCAAGTGAGTCCTCCCTT GTTCACAAAAGAAGTCGTTTCATTCAAGTGAGTCCTCCCTT < 41bp 1 0.0993140637933879 1 0.029966413974762 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CFB ENSG00000243649;ENSG00000244255 CDS Human other chr6:31919375 chr6:31919363 synonymous SNV . 0 9 hm5C_associated_SNPs_15716 0 0 1 0 2 CFB chr6:31919332 3'AG 31919332 Downstream 32bp
chr6 31919363 31919363 1 + G A BLCA 31919375 + 31919355 31919395 41 GTTCACAAGAGAAGTCGTTTCATTCAAGTGAGTCCTCCCTT GTTCACAAAAGAAGTCGTTTCATTCAAGTGAGTCCTCCCTT < 41bp 1 0.0993140637933879 1 0.029966413974762 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CFB ENSG00000243649;ENSG00000244255 CDS Human other chr6:31919375 chr6:31919363 synonymous SNV . 0 9 hm5C_associated_SNPs_15716 0 0 1 0 2 CFB chr6:31919381 5'GT 31919381 Upstream 19bp
chr6 159181706 159181706 1 + A C BLCA 159181716 + 159181696 159181736 41 CCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAAGCTGGT CCTCAGAGTACTGGAGAGCTCACAGTCCGGGCTAAGCTGGT < 41bp 1 0.601275207033376 1 0.287270754575729 experiment 0.797449585933248 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159181716 chr6:159181706 nonsynonymous SNV 0.082 1 11 hm5C_associated_SNPs_15717 0 0 0 0 2 SYTL3 chr6:159181672 3'AG 159181672 Downstream 35bp
chr6 159181706 159181706 1 + A C BLCA 159181716 + 159181696 159181736 41 CCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAAGCTGGT CCTCAGAGTACTGGAGAGCTCACAGTCCGGGCTAAGCTGGT < 41bp 1 0.601275207033376 1 0.287270754575729 experiment 0.797449585933248 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159181716 chr6:159181706 nonsynonymous SNV 0.082 1 11 hm5C_associated_SNPs_15717 0 0 0 0 2 SYTL3 chr6:159181777 5'GT 159181777 Upstream 72bp
chr8 37914710 37914710 1 + G A BLCA 37914699 + 37914679 37914719 41 CCCACCATTCCGGGGGTCACCAGCCCTTCCAGTGATGAGCC CCCACCATTCCGGGGGTCACCAGCCCTTCCAATGATGAGCC < 41bp 1 0.53737319340988 1 0.62015438079834 experiment 0.92525361318024 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4EBP1 ENSG00000187840 CDS Human protein_coding chr8:37914699 chr8:37914710 nonsynonymous SNV 0.897 0 32 hm5C_associated_SNPs_15718 0 0 1 0 1 EIF4EBP1 chr8:37914778 5'GT 37914778 Upstream 69bp
chr16 23700964 23700964 1 + C T BLCA 23700976 + 23700956 23700996 41 CTGCACCTCAGCAACGGCAGCGTGCAGATCAACTTCTTCCA CTGCACCTTAGCAACGGCAGCGTGCAGATCAACTTCTTCCA < 41bp 1 0.215502027903276 1 0.206723898649216 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700976 chr16:23700964 synonymous SNV . 0 9 hm5C_associated_SNPs_15719 0 0 1 0 1 PLK1 chr16:23700997 5'GT 23700997 Upstream 34bp
chr7 142458459 142458459 1 + G A BLCA 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGTTGGGGGCTACAACTGTGAGAAGAATTC < 41bp 1 0.322100648547194 1 0.414350032806396 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458459 nonsynonymous SNV 0.031 1 34 hm5C_associated_SNPs_15720 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 54bp
chr7 142458459 142458459 1 + G A BLCA 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGTTGGGGGCTACAACTGTGAGAAGAATTCTGT < 41bp 1 0.206270866136957 1 0.353601217269897 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458459 nonsynonymous SNV 0.031 1 31 hm5C_associated_SNPs_15721 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 54bp
chr7 142458459 142458459 1 + G A BLCA 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGCTACAACTGTGAGAAGAATTCTGTCCC < 41bp 1 0.398414768874296 1 0.478183209896088 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458459 nonsynonymous SNV 0.031 1 28 hm5C_associated_SNPs_15722 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 54bp
chr7 142458459 142458459 1 + G A BLCA 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGAAGAATTCTGTCCCCTACCAGGTGTCCC < 41bp 1 0.122851862282704 1 0.147478044033051 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458459 nonsynonymous SNV 0.031 1 14 hm5C_associated_SNPs_15723 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 54bp
chr7 142458459 142458459 1 + G A BLCA 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGAAGAATTCTGTCCCCTACCAGGTGTCCCTGAA < 41bp 1 0.116473948424378 1 0.183680236339569 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458459 nonsynonymous SNV 0.031 1 10 hm5C_associated_SNPs_15724 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 54bp
chr7 142458459 142458459 1 + G A BLCA 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGAAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT < 41bp 1 0.0860339735632156 1 0.0827161967754364 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458459 nonsynonymous SNV 0.031 1 9 hm5C_associated_SNPs_15725 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 54bp
chr7 142458459 142458459 1 + G A BLCA 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGAAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT < 41bp 1 0.0135064186840421 1 0.083607941865921 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458459 nonsynonymous SNV 0.031 1 8 hm5C_associated_SNPs_15726 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 54bp
chr7 142458459 142458459 1 + G A BLCA 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGAAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC < 41bp 1 0.171510886152715 1 0.0650572180747986 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458459 nonsynonymous SNV 0.031 1 7 hm5C_associated_SNPs_15727 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 54bp
chr7 142458459 142458459 1 + G A BLCA 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGAAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG < 41bp 1 0.199372079397069 1 0.316688895225525 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458459 nonsynonymous SNV 0.031 1 4 hm5C_associated_SNPs_15728 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 54bp
chr7 142458459 142458459 1 + G A BLCA 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGAAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC < 41bp 1 0.61549727666529 1 0.826404452323914 experiment 0.769005446669419 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458459 nonsynonymous SNV 0.031 1 3 hm5C_associated_SNPs_15729 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 54bp
chr17 78022522 78022522 1 + G A BLCA 78022532 + 78022512 78022552 41 GGAAGCAGAAGACGAAGGGTCCCAGCTGGTGGTTTTGGACC GGAAGCAGAAAACGAAGGGTCCCAGCTGGTGGTTTTGGACC < 41bp 1 0.215087196705432 1 0.222372621297836 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78022532 chr17:78022522 nonsynonymous SNV 0.011 0 11 hm5C_associated_SNPs_15730 0 0 1 0 1 CCDC40 chr17:78022560 5'GT 78022560 Upstream 39bp
chr10 105128238 105128238 1 + G T BLCA 105128225 + 105128205 105128245 41 CTCGGCCCCTGGCCCTGCGGCCCCCGACCCTCCGGGCACTG CTCGGCCCCTGGCCCTGCGGCCCCCGACCCTCCTGGCACTG < 41bp 1 0.2541975228452 1 0.0524328649044037 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF5 ENSG00000148835 CDS Human protein_coding chr10:105128225 chr10:105128238 synonymous SNV . 0 34 hm5C_associated_SNPs_15731 0 0 1 0 1 TAF5 chr10:105128305 5'GT 105128305 Upstream 68bp
chr10 105128238 105128238 1 + G T BLCA 105128226 + 105128206 105128246 41 TCGGCCCCTGGCCCTGCGGCCCCCGACCCTCCGGGCACTGG TCGGCCCCTGGCCCTGCGGCCCCCGACCCTCCTGGCACTGG < 41bp 1 0.489855585258335 1 0.157421350479126 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF5 ENSG00000148835 CDS Human protein_coding chr10:105128226 chr10:105128238 synonymous SNV . 0 33 hm5C_associated_SNPs_15732 0 0 1 0 1 TAF5 chr10:105128305 5'GT 105128305 Upstream 68bp
chr10 105128238 105128238 1 + G T BLCA 105128227 + 105128207 105128247 41 CGGCCCCTGGCCCTGCGGCCCCCGACCCTCCGGGCACTGGC CGGCCCCTGGCCCTGCGGCCCCCGACCCTCCTGGCACTGGC < 41bp 1 0.754647119206819 1 0.235506296157837 experiment 0.490705761586362 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF5 ENSG00000148835 CDS Human protein_coding chr10:105128227 chr10:105128238 synonymous SNV . 0 32 hm5C_associated_SNPs_15733 0 0 1 0 1 TAF5 chr10:105128305 5'GT 105128305 Upstream 68bp
chr10 105128238 105128238 1 + G T BLCA 105128228 + 105128208 105128248 41 GGCCCCTGGCCCTGCGGCCCCCGACCCTCCGGGCACTGGCG GGCCCCTGGCCCTGCGGCCCCCGACCCTCCTGGCACTGGCG < 41bp 1 0.237309062696234 1 0.22476053237915 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF5 ENSG00000148835 CDS Human protein_coding chr10:105128228 chr10:105128238 synonymous SNV . 0 31 hm5C_associated_SNPs_15734 0 0 1 0 1 TAF5 chr10:105128305 5'GT 105128305 Upstream 68bp
chr10 105128238 105128238 1 + G T BLCA 105128258 + 105128238 105128278 41 GGGCACTGGCGCTTCGGGGGCCACGGTCGTCTCAGGTTCAG TGGCACTGGCGCTTCGGGGGCCACGGTCGTCTCAGGTTCAG < 41bp 1 0.520802831030553 1 0.335865199565887 experiment 0.958394337938893 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TAF5 ENSG00000148835 CDS Human protein_coding chr10:105128258 chr10:105128238 synonymous SNV . 0 1 hm5C_associated_SNPs_15735 0 0 1 0 1 TAF5 chr10:105128305 5'GT 105128305 Upstream 68bp
chr10 118305637 118305637 1 + G A BLCA 118305648 + 118305628 118305668 41 ACTGCTGCTGGGAGCAGTAGCAGGTAAGAAAACAAATAAAT ACTGCTGCTAGGAGCAGTAGCAGGTAAGAAAACAAATAAAT < 41bp 1 0.669295655119342 1 0.854607701301575 experiment 0.661408689761316 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118305648 chr10:118305637 synonymous SNV . 0 10 hm5C_associated_SNPs_15738 0 0 0 0 2 PNLIP chr10:118305605 3'AG 118305605 Downstream 33bp
chr10 118305637 118305637 1 + G A BLCA 118305648 + 118305628 118305668 41 ACTGCTGCTGGGAGCAGTAGCAGGTAAGAAAACAAATAAAT ACTGCTGCTAGGAGCAGTAGCAGGTAAGAAAACAAATAAAT < 41bp 1 0.669295655119342 1 0.854607701301575 experiment 0.661408689761316 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118305648 chr10:118305637 synonymous SNV . 0 10 hm5C_associated_SNPs_15738 0 0 0 0 2 PNLIP chr10:118305650 5'GT 118305650 Upstream 14bp
chr6 144613024 144613024 1 + T C BLCA 144613036 + 144613016 144613056 41 TTCAGTGATATCATTAAGTCCAGATCTGGTAGGTAAAGGAA TTCAGTGACATCATTAAGTCCAGATCTGGTAGGTAAAGGAA < 41bp 1 0.0589806355033869 1 0.309093296527863 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144613036 chr6:144613024 synonymous SNV . 0 9 hm5C_associated_SNPs_15739 0 0 1 0 1 UTRN chr6:144613043 5'GT 144613043 Upstream 20bp
chr6 144613024 144613024 1 + T C BLCA 144613041 + 144613021 144613061 41 TGATATCATTAAGTCCAGATCTGGTAGGTAAAGGAAGCTCA TGACATCATTAAGTCCAGATCTGGTAGGTAAAGGAAGCTCA < 41bp 1 0.157520281903363 1 0.283302813768387 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144613041 chr6:144613024 synonymous SNV . 0 4 hm5C_associated_SNPs_15740 0 0 1 0 1 UTRN chr6:144613043 5'GT 144613043 Upstream 20bp
chr1 150923028 150923028 1 + C T BLCA 150923022 + 150923002 150923042 41 TCTTCCATGGCATGCTGGAGCGGGCCCCAGCAGAGCCCTCC TCTTCCATGGCATGCTGGAGCGGGCCTCAGCAGAGCCCTCC < 41bp 1 0.796551829463922 1 0.851551175117493 experiment 0.406896341072156 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150923022 chr1:150923028 nonsynonymous SNV 0.995 3 27 hm5C_associated_SNPs_15741 0 0 0 0 1 SETDB1 chr1:150922934 3'AG 150922934 Downstream 95bp
chr9 7103807 7103807 1 + G A BLCA 7103791 + 7103771 7103811 41 TGTCACTTGTGCCCATGCTGCTGGGGTACTGATGGAGCCTG TGTCACTTGTGCCCATGCTGCTGGGGTACTGATGGAACCTG < 41bp 1 0.754042828490084 1 0.76321804523468 experiment 0.491914343019831 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KDM4C ENSG00000107077 CDS Human protein_coding chr9:7103791 chr9:7103807 synonymous SNV . 0 37 hm5C_associated_SNPs_15743 0 0 0 1 1 KDM4C chr9:7103870 5'GT 7103870 Upstream 64bp
chr4 144390270 144390270 1 + G C BLCA 144390263 + 144390243 144390283 41 TGACCAACAGAAGACCTTGGCTCTAAAGAGTACCCGGGAAG TGACCAACAGAAGACCTTGGCTCTAAACAGTACCCGGGAAG < 41bp 1 0.59209074486334 1 0.84088408946991 experiment 0.815818510273321 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control GAB1 ENSG00000109458 CDS Human protein_coding chr4:144390263 chr4:144390270 nonsynonymous SNV 0.969 4 28 hm5C_associated_SNPs_15744 0 0 1 0 1 GAB1 chr4:144390184 3'AG 144390184 Downstream 87bp
chr9 37770008 37770008 1 + C G BLCA 37769995 + 37769975 37770015 41 CCTTGGAAACCCTTGTGTACCTGACTCCTGACTCAGAACAC CCTTGGAAACCCTTGTGTACCTGACTCCTGACTGAGAACAC < 41bp 1 0.421785815357069 1 0.0485954284667969 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37769995 chr9:37770008 stopgain 0.985 1 34 hm5C_associated_SNPs_15747 0 0 1 1 2 TRMT10B chr9:37769938 3'AG 37769938 Downstream 71bp
chr9 37770008 37770008 1 + C G BLCA 37769995 + 37769975 37770015 41 CCTTGGAAACCCTTGTGTACCTGACTCCTGACTCAGAACAC CCTTGGAAACCCTTGTGTACCTGACTCCTGACTGAGAACAC < 41bp 1 0.421785815357069 1 0.0485954284667969 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37769995 chr9:37770008 stopgain 0.985 1 34 hm5C_associated_SNPs_15747 0 0 1 1 2 TRMT10B chr9:37770016 5'GT 37770016 Upstream 9bp
chr9 37770008 37770008 1 + C G BLCA 37770013 + 37769993 37770033 41 ACCTGACTCCTGACTCAGAACACGGTATGTAGTTGAATGCA ACCTGACTCCTGACTGAGAACACGGTATGTAGTTGAATGCA < 41bp 1 0.729556964557886 1 0.685704708099365 experiment 0.540886070884228 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37770013 chr9:37770008 stopgain 0.985 1 16 hm5C_associated_SNPs_15748 0 0 1 1 2 TRMT10B chr9:37769938 3'AG 37769938 Downstream 71bp
chr9 37770008 37770008 1 + C G BLCA 37770013 + 37769993 37770033 41 ACCTGACTCCTGACTCAGAACACGGTATGTAGTTGAATGCA ACCTGACTCCTGACTGAGAACACGGTATGTAGTTGAATGCA < 41bp 1 0.729556964557886 1 0.685704708099365 experiment 0.540886070884228 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37770013 chr9:37770008 stopgain 0.985 1 16 hm5C_associated_SNPs_15748 0 0 1 1 2 TRMT10B chr9:37770016 5'GT 37770016 Upstream 9bp
chr11 108196125 108196125 1 + G T BLCA 108196145 + 108196125 108196165 41 GAGCCTATCATGGCTCTACGCACAGTCATTTTGGAGATCCT TAGCCTATCATGGCTCTACGCACAGTCATTTTGGAGATCCT < 41bp 1 0.264489763720229 1 0.0708832442760468 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108196145 chr11:108196125 stopgain 1.000 1 1 hm5C_associated_SNPs_15749 0 0 1 0 1 ATM chr11:108196037 3'AG 108196037 Downstream 89bp
chr2 74756539 74756539 1 - C T BLCA 74756536 - 74756516 74756556 41 CTGCGCCTCTTTCTCGGGATCCACGTCTTCCTGGTCAGCTG CTGCGCCTCTTTCTCGGAATCCACGTCTTCCTGGTCAGCTG < 41bp 1 0.457905489670925 1 0.326033502817154 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AUP1 ENSG00000115307 CDS Human protein_coding chr2:74756536 chr2:74756539 synonymous SNV . 0 18 hm5C_associated_SNPs_15750 0 0 1 0 2 AUP1 chr2:74756489 5'GT 74756489 Upstream 51bp
chr2 74756539 74756539 1 - C T BLCA 74756536 - 74756516 74756556 41 CTGCGCCTCTTTCTCGGGATCCACGTCTTCCTGGTCAGCTG CTGCGCCTCTTTCTCGGAATCCACGTCTTCCTGGTCAGCTG < 41bp 1 0.457905489670925 1 0.326033502817154 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AUP1 ENSG00000115307 CDS Human protein_coding chr2:74756536 chr2:74756539 synonymous SNV . 0 18 hm5C_associated_SNPs_15750 0 0 1 0 2 AUP1 chr2:74756626 3'AG 74756626 Downstream 88bp
chr9 137328325 137328325 1 + C G BLCA 137328316 + 137328296 137328336 41 AGACCTGTTCCCTGCAGGTTCGCTAAGCTCTTGCTCCGCCT AGACCTGTTCCCTGCAGGTTCGCTAAGCTGTTGCTCCGCCT < 41bp 1 0.373064987443207 1 0.0987880825996399 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RXRA ENSG00000186350 CDS Human protein_coding chr9:137328316 chr9:137328325 synonymous SNV . 0 30 hm5C_associated_SNPs_15751 0 0 1 0 1 RXRA chr9:137328313 3'AG 137328313 Downstream 13bp
chr4 79173586 79173586 1 + C G BLCA 79173606 + 79173586 79173626 41 CTTGCAATCATGGGGAAGTCCGATGTACCCCCCAACCATGC GTTGCAATCATGGGGAAGTCCGATGTACCCCCCAACCATGC < 41bp 1 0.220297432191602 1 0.576003849506378 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79173606 chr4:79173586 nonsynonymous SNV 0.761 4 1 hm5C_associated_SNPs_15752 0 0 1 0 1 FRAS1 chr4:79173546 3'AG 79173546 Downstream 41bp
chr22 31592944 31592944 1 + C G BLCA 31592933 + 31592913 31592953 41 CTGTTTCAGAGAGAAGACCCCTCCTCGTCCTCAAGGACAGA CTGTTTCAGAGAGAAGACCCCTCCTCGTCCTGAAGGACAGA < 41bp 1 0.137077278151231 1 0.207948625087738 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF185 ENSG00000138942 CDS Human protein_coding chr22:31592933 chr22:31592944 nonsynonymous SNV 0.998 3 32 hm5C_associated_SNPs_15753 0 0 1 0 2 RNF185 chr22:31592922 3'AG 31592922 Downstream 23bp
chr22 31592944 31592944 1 + C G BLCA 31592933 + 31592913 31592953 41 CTGTTTCAGAGAGAAGACCCCTCCTCGTCCTCAAGGACAGA CTGTTTCAGAGAGAAGACCCCTCCTCGTCCTGAAGGACAGA < 41bp 1 0.137077278151231 1 0.207948625087738 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF185 ENSG00000138942 CDS Human protein_coding chr22:31592933 chr22:31592944 nonsynonymous SNV 0.998 3 32 hm5C_associated_SNPs_15753 0 0 1 0 2 RNF185 chr22:31592976 5'GT 31592976 Upstream 33bp
chr14 89069337 89069337 1 + C G BLCA 89069326 + 89069306 89069346 41 CTGCAGCCTCAAACAAGGGACTCAGAGGTCTCCTCCACCCA CTGCAGCCTCAAACAAGGGACTCAGAGGTCTGCTCCACCCA < 41bp 1 0.484435232571596 1 0.205687165260315 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89069326 chr14:89069337 synonymous SNV . 0 32 hm5C_associated_SNPs_15755 0 0 1 0 2 ZC3H14 chr14:89069389 5'GT 89069389 Upstream 53bp
chr14 89069337 89069337 1 + C G BLCA 89069326 + 89069306 89069346 41 CTGCAGCCTCAAACAAGGGACTCAGAGGTCTCCTCCACCCA CTGCAGCCTCAAACAAGGGACTCAGAGGTCTGCTCCACCCA < 41bp 1 0.484435232571596 1 0.205687165260315 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89069326 chr14:89069337 synonymous SNV . 0 32 hm5C_associated_SNPs_15755 0 0 1 0 2 ZC3H14 chr14:89069404 5'GT 89069404 Upstream 68bp
chr1 44423150 44423150 1 + G T BLCA 44423168 + 44423148 44423188 41 TGGGCTCATTGGCCTCATCCCACGGATCAGCATCAGCAACG TGTGCTCATTGGCCTCATCCCACGGATCAGCATCAGCAACG < 41bp 1 0.770459585483833 1 0.789396405220032 experiment 0.459080829032334 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IPO13 ENSG00000117408 CDS Human protein_coding chr1:44423168 chr1:44423150 nonsynonymous SNV 1.000 2 3 hm5C_associated_SNPs_15756 0 0 1 0 2 IPO13 chr1:44423074 3'AG 44423074 Downstream 77bp
chr1 44423150 44423150 1 + G T BLCA 44423168 + 44423148 44423188 41 TGGGCTCATTGGCCTCATCCCACGGATCAGCATCAGCAACG TGTGCTCATTGGCCTCATCCCACGGATCAGCATCAGCAACG < 41bp 1 0.770459585483833 1 0.789396405220032 experiment 0.459080829032334 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IPO13 ENSG00000117408 CDS Human protein_coding chr1:44423168 chr1:44423150 nonsynonymous SNV 1.000 2 3 hm5C_associated_SNPs_15756 0 0 1 0 2 IPO13 chr1:44423221 5'GT 44423221 Upstream 72bp
chr1 44423149 44423149 1 + G T BLCA 44423168 + 44423148 44423188 41 TGGGCTCATTGGCCTCATCCCACGGATCAGCATCAGCAACG TTGGCTCATTGGCCTCATCCCACGGATCAGCATCAGCAACG < 41bp 1 0.737427556518789 1 0.729968905448914 experiment 0.525144886962423 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IPO13 ENSG00000117408 CDS Human protein_coding chr1:44423168 chr1:44423149 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_15758 0 0 1 0 2 IPO13 chr1:44423074 3'AG 44423074 Downstream 76bp
chr1 44423149 44423149 1 + G T BLCA 44423168 + 44423148 44423188 41 TGGGCTCATTGGCCTCATCCCACGGATCAGCATCAGCAACG TTGGCTCATTGGCCTCATCCCACGGATCAGCATCAGCAACG < 41bp 1 0.737427556518789 1 0.729968905448914 experiment 0.525144886962423 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IPO13 ENSG00000117408 CDS Human protein_coding chr1:44423168 chr1:44423149 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_15758 0 0 1 0 2 IPO13 chr1:44423221 5'GT 44423221 Upstream 73bp
chr3 111667863 111667863 1 + G A BLCA 111667867 + 111667847 111667887 41 GTTTCCTGCTGATGCTGATGCTGTTGCCACTGAGCCTGCCA GTTTCCTGCTGATGCTAATGCTGTTGCCACTGAGCCTGCCA < 41bp 1 0.296470071196957 1 0.124471247196198 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111667867 chr3:111667863 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_15763 0 0 1 0 2 PHLDB2 chr3:111667779 3'AG 111667779 Downstream 85bp
chr3 111667863 111667863 1 + G A BLCA 111667867 + 111667847 111667887 41 GTTTCCTGCTGATGCTGATGCTGTTGCCACTGAGCCTGCCA GTTTCCTGCTGATGCTAATGCTGTTGCCACTGAGCCTGCCA < 41bp 1 0.296470071196957 1 0.124471247196198 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111667867 chr3:111667863 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_15763 0 0 1 0 2 PHLDB2 chr3:111667922 5'GT 111667922 Upstream 60bp
chr12 56536120 56536120 1 + G C BLCA 56536133 + 56536113 56536153 41 CCTCTCAGAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACC CCTCTCACAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACC < 41bp 1 0.19936307769711 1 0.0612793564796448 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56536133 chr12:56536120 nonsynonymous SNV 0.118 1 8 hm5C_associated_SNPs_15764 0 0 1 0 2 ESYT1 chr12:56536069 3'AG 56536069 Downstream 52bp
chr12 56536120 56536120 1 + G C BLCA 56536133 + 56536113 56536153 41 CCTCTCAGAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACC CCTCTCACAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACC < 41bp 1 0.19936307769711 1 0.0612793564796448 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56536133 chr12:56536120 nonsynonymous SNV 0.118 1 8 hm5C_associated_SNPs_15764 0 0 1 0 2 ESYT1 chr12:56536209 5'GT 56536209 Upstream 90bp
chr12 56536120 56536120 1 + G C BLCA 56536138 + 56536118 56536158 41 CAGAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACCGCTGG CACAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACCGCTGG < 41bp 1 0.413416995750067 1 0.367451995611191 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56536138 chr12:56536120 nonsynonymous SNV 0.118 1 3 hm5C_associated_SNPs_15765 0 0 1 0 2 ESYT1 chr12:56536069 3'AG 56536069 Downstream 52bp
chr12 56536120 56536120 1 + G C BLCA 56536138 + 56536118 56536158 41 CAGAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACCGCTGG CACAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACCGCTGG < 41bp 1 0.413416995750067 1 0.367451995611191 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56536138 chr12:56536120 nonsynonymous SNV 0.118 1 3 hm5C_associated_SNPs_15765 0 0 1 0 2 ESYT1 chr12:56536209 5'GT 56536209 Upstream 90bp
chr3 52245348 52245348 1 + G C BLCA 52245356 + 52245336 52245376 41 CACGAGTTCTCTGATTGACACCGTACGGTCCTATGCTGCTG CACGAGTTCTCTCATTGACACCGTACGGTCCTATGCTGCTG < 41bp 1 0.3742789597365 1 0.0782708525657654 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245356 chr3:52245348 synonymous SNV . 0 13 hm5C_associated_SNPs_15766 0 0 1 0 1 ALAS1 chr3:52245299 3'AG 52245299 Downstream 50bp
chr3 52245348 52245348 1 + G C BLCA 52245357 + 52245337 52245377 41 ACGAGTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGG ACGAGTTCTCTCATTGACACCGTACGGTCCTATGCTGCTGG < 41bp 1 0.138958341229465 1 0.217686295509338 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245357 chr3:52245348 synonymous SNV . 0 12 hm5C_associated_SNPs_15767 0 0 1 0 1 ALAS1 chr3:52245299 3'AG 52245299 Downstream 50bp
chr3 52245348 52245348 1 + G C BLCA 52245361 + 52245341 52245381 41 GTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGGCTTC GTTCTCTCATTGACACCGTACGGTCCTATGCTGCTGGCTTC < 41bp 1 0.258338927787103 1 0.351582676172256 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245361 chr3:52245348 synonymous SNV . 0 8 hm5C_associated_SNPs_15768 0 0 1 0 1 ALAS1 chr3:52245299 3'AG 52245299 Downstream 50bp
chr8 144643973 144643973 1 + G T BLCA 144643964 + 144643944 144643984 41 CCACAGCTGCCCTCTGGCCTCTCCATGATGAGGTGCCTCCA CCACAGCTGCCCTCTGGCCTCTCCATGATTAGGTGCCTCCA < 41bp 1 0.736455649472809 1 0.97929048538208 experiment 0.527088701054381 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control GSDMD ENSG00000104518 CDS Human protein_coding chr8:144643964 chr8:144643973 nonsynonymous SNV 0.000 0 30 hm5C_associated_SNPs_15769 0 0 1 0 2 GSDMD chr8:144643912 3'AG 144643912 Downstream 62bp
chr8 144643973 144643973 1 + G T BLCA 144643964 + 144643944 144643984 41 CCACAGCTGCCCTCTGGCCTCTCCATGATGAGGTGCCTCCA CCACAGCTGCCCTCTGGCCTCTCCATGATTAGGTGCCTCCA < 41bp 1 0.736455649472809 1 0.97929048538208 experiment 0.527088701054381 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control GSDMD ENSG00000104518 CDS Human protein_coding chr8:144643964 chr8:144643973 nonsynonymous SNV 0.000 0 30 hm5C_associated_SNPs_15769 0 0 1 0 2 GSDMD chr8:144643998 5'GT 144643998 Upstream 26bp
chr16 67572595 67572595 1 + C T BLCA 67572603 + 67572583 67572623 41 CGGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCG CGGTCTTCAGCCTGCCGGGGCCCCCACGGAAGCCCCCCGCG < 41bp 1 0.0748406094190974 1 0.194207727909088 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572603 chr16:67572595 nonsynonymous SNV 0.967 1 13 hm5C_associated_SNPs_15770 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 33bp
chr16 67572595 67572595 1 + C T BLCA 67572603 + 67572583 67572623 41 CGGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCG CGGTCTTCAGCCTGCCGGGGCCCCCACGGAAGCCCCCCGCG < 41bp 1 0.0748406094190974 1 0.194207727909088 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572603 chr16:67572595 nonsynonymous SNV 0.967 1 13 hm5C_associated_SNPs_15770 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 21bp
chr16 67572595 67572595 1 + C T BLCA 67572604 + 67572584 67572624 41 GGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGC GGTCTTCAGCCTGCCGGGGCCCCCACGGAAGCCCCCCGCGC < 41bp 1 0.503943230420124 1 0.288354903459549 experiment 0.992113539159752 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572604 chr16:67572595 nonsynonymous SNV 0.967 1 12 hm5C_associated_SNPs_15771 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 33bp
chr16 67572595 67572595 1 + C T BLCA 67572604 + 67572584 67572624 41 GGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGC GGTCTTCAGCCTGCCGGGGCCCCCACGGAAGCCCCCCGCGC < 41bp 1 0.503943230420124 1 0.288354903459549 experiment 0.992113539159752 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572604 chr16:67572595 nonsynonymous SNV 0.967 1 12 hm5C_associated_SNPs_15771 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 21bp
chr16 67572595 67572595 1 + C T BLCA 67572605 + 67572585 67572625 41 GTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCT GTCTTCAGCCTGCCGGGGCCCCCACGGAAGCCCCCCGCGCT < 41bp 1 0.154809972110037 1 0.403689950704575 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572605 chr16:67572595 nonsynonymous SNV 0.967 1 11 hm5C_associated_SNPs_15772 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 33bp
chr16 67572595 67572595 1 + C T BLCA 67572605 + 67572585 67572625 41 GTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCT GTCTTCAGCCTGCCGGGGCCCCCACGGAAGCCCCCCGCGCT < 41bp 1 0.154809972110037 1 0.403689950704575 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572605 chr16:67572595 nonsynonymous SNV 0.967 1 11 hm5C_associated_SNPs_15772 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 21bp
chr16 67572595 67572595 1 + C T BLCA 67572606 + 67572586 67572626 41 TCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTC TCTTCAGCCTGCCGGGGCCCCCACGGAAGCCCCCCGCGCTC < 41bp 1 0.490103496651865 1 0.333642840385437 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572606 chr16:67572595 nonsynonymous SNV 0.967 1 10 hm5C_associated_SNPs_15773 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 33bp
chr16 67572595 67572595 1 + C T BLCA 67572606 + 67572586 67572626 41 TCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTC TCTTCAGCCTGCCGGGGCCCCCACGGAAGCCCCCCGCGCTC < 41bp 1 0.490103496651865 1 0.333642840385437 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572606 chr16:67572595 nonsynonymous SNV 0.967 1 10 hm5C_associated_SNPs_15773 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 21bp
chr16 67572595 67572595 1 + C T BLCA 67572607 + 67572587 67572627 41 CTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTCT CTTCAGCCTGCCGGGGCCCCCACGGAAGCCCCCCGCGCTCT < 41bp 1 0.795399689628157 1 0.804968237876892 experiment 0.409200620743686 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572607 chr16:67572595 nonsynonymous SNV 0.967 1 9 hm5C_associated_SNPs_15774 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 33bp
chr16 67572595 67572595 1 + C T BLCA 67572607 + 67572587 67572627 41 CTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTCT CTTCAGCCTGCCGGGGCCCCCACGGAAGCCCCCCGCGCTCT < 41bp 1 0.795399689628157 1 0.804968237876892 experiment 0.409200620743686 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572607 chr16:67572595 nonsynonymous SNV 0.967 1 9 hm5C_associated_SNPs_15774 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 21bp
chr9 131196706 131196706 1 + A C BLCA 131196705 + 131196685 131196725 41 ACAGCTACCTCGGACGGAAGCAGGTGAACCCTGAGAAGGAG ACAGCTACCTCGGACGGAAGCCGGTGAACCCTGAGAAGGAG < 41bp 1 0.343511247987114 1 0.734553635120392 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131196705 chr9:131196706 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_15776 0 0 1 0 1 CERCAM chr9:131196689 3'AG 131196689 Downstream 18bp
chr22 38084997 38084997 1 + G A BLCA 38084995 + 38084975 38085015 41 GCTGCTCGGGCTGACCCCACCTGAGGTGGGTCCCAGTCTCA GCTGCTCGGGCTGACCCCACCTAAGGTGGGTCCCAGTCTCA < 41bp 1 0.713303117322124 1 0.606793880462646 experiment 0.573393765355753 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOL12 ENSG00000100101 CDS Human protein_coding chr22:38084995 chr22:38084997 nonsynonymous SNV 0.412 1 23 hm5C_associated_SNPs_15777 0 0 1 0 1 NOL12 chr22:38084999 5'GT 38084999 Upstream 3bp
chr1 183096408 183096408 1 + G A BLCA 183096391 + 183096371 183096411 41 TCATCCTGAGGGATCTCTTTCACTTCAGTGCAAAGATGATG TCATCCTGAGGGATCTCTTTCACTTCAGTGCAAAGATAATG < 41bp 1 0.0812481936001477 1 0.120770424604416 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183096391 chr1:183096408 nonsynonymous SNV 0.983 0 38 hm5C_associated_SNPs_15780 0 0 1 0 1 LAMC1 chr1:183096361 3'AG 183096361 Downstream 48bp
chr11 65831159 65831159 1 + C G BLCA 65831150 + 65831130 65831170 41 GTGCCTGCTGGAATGGAGACCCCTGAACTCATTGAGCTGAG GTGCCTGCTGGAATGGAGACCCCTGAACTGATTGAGCTGAG < 41bp 1 0.149781271574559 1 0.310024917125702 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65831150 chr11:65831159 synonymous SNV . 0 30 hm5C_associated_SNPs_15783 0 0 1 0 2 SF3B2 chr11:65831099 3'AG 65831099 Downstream 61bp
chr11 65831159 65831159 1 + C G BLCA 65831150 + 65831130 65831170 41 GTGCCTGCTGGAATGGAGACCCCTGAACTCATTGAGCTGAG GTGCCTGCTGGAATGGAGACCCCTGAACTGATTGAGCTGAG < 41bp 1 0.149781271574559 1 0.310024917125702 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65831150 chr11:65831159 synonymous SNV . 0 30 hm5C_associated_SNPs_15783 0 0 1 0 2 SF3B2 chr11:65831200 5'GT 65831200 Upstream 42bp
chr11 65392689 65392689 1 + T C BLCA 65392705 + 65392685 65392725 41 TCTGTGGCCTCCTGGTGGCACTGTCCTACCACCTGAGCCGG TCTGCGGCCTCCTGGTGGCACTGTCCTACCACCTGAGCCGG < 41bp 1 0.123606492014658 1 0.426356911659241 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65392705 chr11:65392689 synonymous SNV . 0 5 hm5C_associated_SNPs_15786 0 0 1 0 2 PCNX3 chr11:65392642 3'AG 65392642 Downstream 48bp
chr11 65392689 65392689 1 + T C BLCA 65392705 + 65392685 65392725 41 TCTGTGGCCTCCTGGTGGCACTGTCCTACCACCTGAGCCGG TCTGCGGCCTCCTGGTGGCACTGTCCTACCACCTGAGCCGG < 41bp 1 0.123606492014658 1 0.426356911659241 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65392705 chr11:65392689 synonymous SNV . 0 5 hm5C_associated_SNPs_15786 0 0 1 0 2 PCNX3 chr11:65392751 5'GT 65392751 Upstream 63bp
chr2 32800276 32800276 1 + C T BLCA 32800281 + 32800261 32800301 41 CTGCTGGAATTGCTTCGGGCCATTGCTTCTTGTGCTGCCAT CTGCTGGAATTGCTTTGGGCCATTGCTTCTTGTGCTGCCAT < 41bp 1 0.0388585748874464 1 0.105528503656387 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32800281 chr2:32800276 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_15787 0 0 1 0 1 BIRC6 chr2:32800223 3'AG 32800223 Downstream 54bp
chr7 44100407 44100407 1 + G A BLCA 44100392 + 44100372 44100412 41 GCAGCCGACGACACAGAGATCTCCTTTGACCCCGAGAACCT GCAGCCGACGACACAGAGATCTCCTTTGACCCCGAAAACCT < 41bp 1 0.50726363991337 1 0.621905446052551 experiment 0.98547272017326 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DBNL ENSG00000136279 CDS Human protein_coding chr7:44100392 chr7:44100407 synonymous SNV . 0 36 hm5C_associated_SNPs_15788 0 0 1 0 1 DBNL chr7:44100376 3'AG 44100376 Downstream 32bp
chr15 99459920 99459920 1 + G A BLCA 99459934 + 99459914 99459954 41 CAGGAAGTATGCCGACGGCACCATCGACATTGAGGAGGTCA CAGGAAATATGCCGACGGCACCATCGACATTGAGGAGGTCA < 41bp 1 0.0118440691805829 1 0.0722474157810211 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IGF1R ENSG00000140443 CDS Human protein_coding chr15:99459934 chr15:99459920 synonymous SNV . 0 7 hm5C_associated_SNPs_15791 0 0 1 0 1 IGF1R chr15:99459901 3'AG 99459901 Downstream 20bp
chr11 36422804 36422804 1 + C T BLCA 36422793 + 36422773 36422813 41 CCTTCCCCGATTCCAAGCAGCTCGGCAGGCTCTGCAGCTGA CCTTCCCCGATTCCAAGCAGCTCGGCAGGCTTTGCAGCTGA < 41bp 1 0.697840583014796 1 0.537299156188965 experiment 0.604318833970407 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRR5L ENSG00000135362 CDS Human protein_coding chr11:36422793 chr11:36422804 synonymous SNV . 0 32 hm5C_associated_SNPs_15792 0 0 0 0 1 PRR5L chr11:36422835 5'GT 36422835 Upstream 32bp
chr1 29068983 29068983 1 + C T BLCA 29068982 + 29068962 29069002 41 CAGTCCCTCCATTGGCTTCTCCTATTCTTTGGGTGAAGCTG CAGTCCCTCCATTGGCTTCTCTTATTCTTTGGGTGAAGCTG < 41bp 1 0.123826368685678 1 0.102931261062622 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29068982 chr1:29068983 synonymous SNV . 0 22 hm5C_associated_SNPs_15793 0 0 1 0 1 YTHDF2 chr1:29068915 3'AG 29068915 Downstream 69bp
chr1 29068983 29068983 1 + C T BLCA 29069000 + 29068980 29069020 41 CTCCTATTCTTTGGGTGAAGCTGCTTGGTCTACGGGGGGTG CTCTTATTCTTTGGGTGAAGCTGCTTGGTCTACGGGGGGTG < 41bp 1 0.498223257516102 1 0.188609570264816 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29069000 chr1:29068983 synonymous SNV . 0 4 hm5C_associated_SNPs_15794 0 0 1 0 1 YTHDF2 chr1:29068915 3'AG 29068915 Downstream 69bp
chr5 14359563 14359563 1 + G C BLCA 14359551 + 14359531 14359571 41 TGCAGCAGCTGGACGAGGCGCAGTCGCAGATGGAGGAGCTC TGCAGCAGCTGGACGAGGCGCAGTCGCAGATGCAGGAGCTC < 41bp 1 0.0648473677666488 1 0.247942477464676 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359551 chr5:14359563 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_15797 0 0 1 0 2 TRIO chr5:14359466 3'AG 14359466 Downstream 98bp
chr5 14359563 14359563 1 + G C BLCA 14359551 + 14359531 14359571 41 TGCAGCAGCTGGACGAGGCGCAGTCGCAGATGGAGGAGCTC TGCAGCAGCTGGACGAGGCGCAGTCGCAGATGCAGGAGCTC < 41bp 1 0.0648473677666488 1 0.247942477464676 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359551 chr5:14359563 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_15797 0 0 1 0 2 TRIO chr5:14359640 5'GT 14359640 Upstream 78bp
chr5 14359563 14359563 1 + G C BLCA 14359555 + 14359535 14359575 41 GCAGCTGGACGAGGCGCAGTCGCAGATGGAGGAGCTCTTCC GCAGCTGGACGAGGCGCAGTCGCAGATGCAGGAGCTCTTCC < 41bp 1 0.573594775880504 1 0.833060622215271 experiment 0.852810448238992 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359555 chr5:14359563 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_15798 0 0 1 0 2 TRIO chr5:14359466 3'AG 14359466 Downstream 98bp
chr5 14359563 14359563 1 + G C BLCA 14359555 + 14359535 14359575 41 GCAGCTGGACGAGGCGCAGTCGCAGATGGAGGAGCTCTTCC GCAGCTGGACGAGGCGCAGTCGCAGATGCAGGAGCTCTTCC < 41bp 1 0.573594775880504 1 0.833060622215271 experiment 0.852810448238992 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359555 chr5:14359563 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_15798 0 0 1 0 2 TRIO chr5:14359640 5'GT 14359640 Upstream 78bp
chr17 17080692 17080692 1 + G A BLCA 17080673 + 17080653 17080693 41 GAAGGAGCAGCTCAAGGCTGCAACGGAAGCACTGGGGGAGA GAAGGAGCAGCTCAAGGCTGCAACGGAAGCACTGGGGGAAA < 41bp 1 0.300717848354633 1 0.283570647239685 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17080673 chr17:17080692 synonymous SNV . 0 40 hm5C_associated_SNPs_15799 0 0 1 0 1 MPRIP chr17:17080726 5'GT 17080726 Upstream 35bp
chr17 78704398 78704398 1 + G A BLCA 78704396 + 78704376 78704416 41 TCCCTCTGTCCATATATGACCTGCAGACGTGGATGGGCAGC TCCCTCTGTCCATATATGACCTACAGACGTGGATGGGCAGC < 41bp 1 0.320486274785701 1 0.0889462828636169 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPTOR ENSG00000141564 CDS Human protein_coding chr17:78704396 chr17:78704398 synonymous SNV . 0 23 hm5C_associated_SNPs_15800 0 0 1 0 1 RPTOR chr17:78704360 3'AG 78704360 Downstream 39bp
chr16 29828297 29828297 1 + G A BLCA 29828289 + 29828269 29828309 41 CCAGAGCGAAGAGGAGAGATCCGATGAGGAGCCGGAGGCCA CCAGAGCGAAGAGGAGAGATCCGATGAGAAGCCGGAGGCCA < 41bp 1 0.497288378321504 1 0.196414440870285 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828289 chr16:29828297 nonsynonymous SNV 0.997 1 29 hm5C_associated_SNPs_15803 0 0 1 0 1 PAGR1 chr16:29828328 5'GT 29828328 Upstream 32bp
chr16 29828297 29828297 1 + G A BLCA 29828300 + 29828280 29828320 41 AGGAGAGATCCGATGAGGAGCCGGAGGCCAAAGAAGAGGAA AGGAGAGATCCGATGAGAAGCCGGAGGCCAAAGAAGAGGAA < 41bp 1 0.755648146990585 1 0.637075364589691 experiment 0.48870370601883 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828300 chr16:29828297 nonsynonymous SNV 0.997 1 18 hm5C_associated_SNPs_15804 0 0 1 0 1 PAGR1 chr16:29828328 5'GT 29828328 Upstream 32bp
chr16 29828297 29828297 1 + G A BLCA 29828301 + 29828281 29828321 41 GGAGAGATCCGATGAGGAGCCGGAGGCCAAAGAAGAGGAAG GGAGAGATCCGATGAGAAGCCGGAGGCCAAAGAAGAGGAAG < 41bp 1 0.77009299037808 1 0.751368343830109 experiment 0.459814019243841 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828301 chr16:29828297 nonsynonymous SNV 0.997 1 17 hm5C_associated_SNPs_15805 0 0 1 0 1 PAGR1 chr16:29828328 5'GT 29828328 Upstream 32bp
chr16 29828297 29828297 1 + G A BLCA 29828307 + 29828287 29828327 41 ATCCGATGAGGAGCCGGAGGCCAAAGAAGAGGAAGAGGAAA ATCCGATGAGAAGCCGGAGGCCAAAGAAGAGGAAGAGGAAA < 41bp 1 0.37853040273126 1 0.555944800376892 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828307 chr16:29828297 nonsynonymous SNV 0.997 1 11 hm5C_associated_SNPs_15806 0 0 1 0 1 PAGR1 chr16:29828328 5'GT 29828328 Upstream 32bp
chr19 7682676 7682676 1 + C G BLCA 7682691 + 7682671 7682711 41 ATCCTCTTTCGCGACTCGAGCTGCCAGTTCCGGGCGCTCTA ATCCTGTTTCGCGACTCGAGCTGCCAGTTCCGGGCGCTCTA < 41bp 1 0.26040615116115 1 0.0626251995563507 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7682691 chr19:7682676 synonymous SNV . 0 6 hm5C_associated_SNPs_15807 0 0 0 0 1 CAMSAP3 chr19:7682638 3'AG 7682638 Downstream 39bp
chr13 113729380 113729380 1 + G A BLCA 113729386 + 113729366 113729406 41 AACAAGCACTACGCGGTAGACTCCATCCGCCCAAAGTGCCA AACAAGCACTACGCAGTAGACTCCATCCGCCCAAAGTGCCA < 41bp 1 0.685259864210347 1 0.88517689704895 experiment 0.629480271579306 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113729386 chr13:113729380 synonymous SNV . 0 15 hm5C_associated_SNPs_15808 0 0 1 0 1 MCF2L chr13:113729312 3'AG 113729312 Downstream 69bp
chr5 43122240 43122240 1 + G C BLCA 43122248 + 43122228 43122268 41 AATGAACAGCGAGAGCAGGACCGGTTTACTGACATCACCCT AATGAACAGCGACAGCAGGACCGGTTTACTGACATCACCCT < 41bp 1 0.475642555405925 1 0.206282585859299 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF131 ENSG00000172262 CDS Human protein_coding chr5:43122248 chr5:43122240 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_15809 0 0 1 0 2 ZNF131 chr5:43122141 3'AG 43122141 Downstream 100bp
chr5 43122240 43122240 1 + G C BLCA 43122248 + 43122228 43122268 41 AATGAACAGCGAGAGCAGGACCGGTTTACTGACATCACCCT AATGAACAGCGACAGCAGGACCGGTTTACTGACATCACCCT < 41bp 1 0.475642555405925 1 0.206282585859299 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF131 ENSG00000172262 CDS Human protein_coding chr5:43122248 chr5:43122240 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_15809 0 0 1 0 2 ZNF131 chr5:43122279 5'GT 43122279 Upstream 40bp
chr10 76729438 76729438 1 + T G BLCA 76729423 + 76729403 76729443 41 TTTTTATTCTCATAGGACACCCATCCTGTTTGAAATTTTGT TTTTTATTCTCATAGGACACCCATCCTGTTTGAAAGTTTGT < 41bp 1 0.00286106105783415 1 0.0646888315677643 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KAT6B ENSG00000156650 CDS Human protein_coding chr10:76729423 chr10:76729438 nonsynonymous SNV 1.000 5 36 hm5C_associated_SNPs_15811 0 0 1 0 2 KAT6B chr10:76729418 3'AG 76729418 Downstream 21bp
chr10 76729438 76729438 1 + T G BLCA 76729423 + 76729403 76729443 41 TTTTTATTCTCATAGGACACCCATCCTGTTTGAAATTTTGT TTTTTATTCTCATAGGACACCCATCCTGTTTGAAAGTTTGT < 41bp 1 0.00286106105783415 1 0.0646888315677643 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KAT6B ENSG00000156650 CDS Human protein_coding chr10:76729423 chr10:76729438 nonsynonymous SNV 1.000 5 36 hm5C_associated_SNPs_15811 0 0 1 0 2 KAT6B chr10:76729533 5'GT 76729533 Upstream 96bp
chr7 36438905 36438905 1 + G A BLCA 36438890 + 36438870 36438910 41 GTCCCGGCATCACTGCTGGGCATGAGGAGAGGGCTGAACTC GTCCCGGCATCACTGCTGGGCATGAGGAGAGGGCTAAACTC < 41bp 1 0.777774376790702 1 0.184494167566299 experiment 0.444451246418596 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36438890 chr7:36438905 synonymous SNV . 0 36 hm5C_associated_SNPs_15812 0 0 1 0 1 ANLN chr7:36439002 5'GT 36439002 Upstream 98bp
chr7 36438905 36438905 1 + G A BLCA 36438903 + 36438883 36438923 41 TGCTGGGCATGAGGAGAGGGCTGAACTCAAGATTGGAAGCA TGCTGGGCATGAGGAGAGGGCTAAACTCAAGATTGGAAGCA < 41bp 1 0.709296389786183 1 0.240818351507187 experiment 0.581407220427633 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36438903 chr7:36438905 synonymous SNV . 0 23 hm5C_associated_SNPs_15813 0 0 1 0 1 ANLN chr7:36439002 5'GT 36439002 Upstream 98bp
chr1 145293183 145293183 1 + C T BLCA 145293174 + 145293154 145293194 41 ATCAGAGTCTGAGCTACTGGCAGTGCTTTCAGCTCTGAGTT ATCAGAGTCTGAGCTACTGGCAGTGCTTTTAGCTCTGAGTT < 41bp 1 0.118747452966283 1 0.113604694604874 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NBPF25P ENSG00000255168 CDS Human other chr1:145293174 chr1:145293183 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_15814 0 0 0 0 2 NBPF25P chr1:145293114 3'AG 145293114 Downstream 70bp
chr1 145293183 145293183 1 + C T BLCA 145293174 + 145293154 145293194 41 ATCAGAGTCTGAGCTACTGGCAGTGCTTTCAGCTCTGAGTT ATCAGAGTCTGAGCTACTGGCAGTGCTTTTAGCTCTGAGTT < 41bp 1 0.118747452966283 1 0.113604694604874 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NBPF25P ENSG00000255168 CDS Human other chr1:145293174 chr1:145293183 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_15814 0 0 0 0 2 NBPF25P chr1:145293272 5'GT 145293272 Upstream 90bp
chr20 37632410 37632410 1 + G T BLCA 37632421 + 37632401 37632441 41 GAAACTGTTGTGTCGATGCTCATCGAGCAGGCTCGAGCACT GAAACTGTTTTGTCGATGCTCATCGAGCAGGCTCGAGCACT < 41bp 1 0.324544608612072 1 0.0628635883331299 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX35 ENSG00000101452 CDS Human protein_coding chr20:37632421 chr20:37632410 nonsynonymous SNV 0.372 1 10 hm5C_associated_SNPs_15815 0 0 1 0 1 DHX35 chr20:37632392 3'AG 37632392 Downstream 19bp
chr6 31929373 31929373 1 + A T BLCA 31929378 + 31929358 31929398 41 CAGAGCCTCCATCTCAGGAGCAGTGGGCCATCCCTGTGGAC CAGAGCCTCCATCTCTGGAGCAGTGGGCCATCCCTGTGGAC < 41bp 1 0.283508568115925 1 0.460815757513046 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31929378 chr6:31929373 nonsynonymous SNV 0.965 0 16 hm5C_associated_SNPs_15821 0 0 1 0 2 SKIV2L chr6:31929324 3'AG 31929324 Downstream 50bp
chr6 31929373 31929373 1 + A T BLCA 31929378 + 31929358 31929398 41 CAGAGCCTCCATCTCAGGAGCAGTGGGCCATCCCTGTGGAC CAGAGCCTCCATCTCTGGAGCAGTGGGCCATCCCTGTGGAC < 41bp 1 0.283508568115925 1 0.460815757513046 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31929378 chr6:31929373 nonsynonymous SNV 0.965 0 16 hm5C_associated_SNPs_15821 0 0 1 0 2 SKIV2L chr6:31929452 5'GT 31929452 Upstream 80bp
chr7 44735681 44735681 1 + G A BLCA 44735695 + 44735675 44735715 41 AAAGATGAGAAGATCTTGCACATTAAGCACTGGCTGGACTC AAAGATAAGAAGATCTTGCACATTAAGCACTGGCTGGACTC < 41bp 1 0.219482820506036 1 0.0235190689563751 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44735695 chr7:44735681 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_15824 0 0 1 0 2 OGDH chr7:44735624 3'AG 44735624 Downstream 58bp
chr7 44735681 44735681 1 + G A BLCA 44735695 + 44735675 44735715 41 AAAGATGAGAAGATCTTGCACATTAAGCACTGGCTGGACTC AAAGATAAGAAGATCTTGCACATTAAGCACTGGCTGGACTC < 41bp 1 0.219482820506036 1 0.0235190689563751 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44735695 chr7:44735681 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_15824 0 0 1 0 2 OGDH chr7:44735726 5'GT 44735726 Upstream 46bp
chr9 130569504 130569504 1 + C T BLCA 130569510 + 130569490 130569530 41 TGGCAGCTGTGTCTCCATGCCCCCCTACTTCCGCTTCCTGA TGGCAGCTGTGTCTTCATGCCCCCCTACTTCCGCTTCCTGA < 41bp 1 0.0899149776930462 1 0.0510707795619965 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FPGS ENSG00000136877 CDS Human protein_coding chr9:130569510 chr9:130569504 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_15825 0 0 1 0 2 FPGS chr9:130569488 3'AG 130569488 Downstream 17bp
chr9 130569504 130569504 1 + C T BLCA 130569510 + 130569490 130569530 41 TGGCAGCTGTGTCTCCATGCCCCCCTACTTCCGCTTCCTGA TGGCAGCTGTGTCTTCATGCCCCCCTACTTCCGCTTCCTGA < 41bp 1 0.0899149776930462 1 0.0510707795619965 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FPGS ENSG00000136877 CDS Human protein_coding chr9:130569510 chr9:130569504 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_15825 0 0 1 0 2 FPGS chr9:130569565 5'GT 130569565 Upstream 62bp
chr4 7026936 7026936 1 + T C BLCA 7026933 + 7026913 7026953 41 AGGACCTGCCCGCCGAGGAGCTGTTTGCCTCCATCGCCACG AGGACCTGCCCGCCGAGGAGCTGCTTGCCTCCATCGCCACG < 41bp 1 0.396535706488239 1 0.107042014598846 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBC1D14 ENSG00000132405 CDS Human protein_coding chr4:7026933 chr4:7026936 nonsynonymous SNV 0.639 3 24 hm5C_associated_SNPs_15826 0 0 1 0 1 TBC1D14 chr4:7026989 5'GT 7026989 Upstream 54bp
chr16 67314896 67314896 1 + G A BLCA 67314905 + 67314885 67314925 41 GCTGTACCTGCGAAGCATCCCCAGGTTTGAGGGAGGGGGTT GCTGTACCTGCAAAGCATCCCCAGGTTTGAGGGAGGGGGTT < 41bp 1 0.308109997715841 1 0.167500287294388 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67314905 chr16:67314896 nonsynonymous SNV 0.907 0 12 hm5C_associated_SNPs_15827 0 0 1 0 1 PLEKHG4 chr16:67314908 5'GT 67314908 Upstream 13bp
chr10 99216591 99216591 1 + G A BLCA 99216603 + 99216583 99216623 41 AATGGAATGAGCTGGGAGCCCCCTCCCTGGGTGACTGCTCA AATGGAATAAGCTGGGAGCCCCCTCCCTGGGTGACTGCTCA < 41bp 1 0.0958824502764381 1 0.102696895599365 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99216603 chr10:99216591 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_15828 0 0 1 0 1 ZDHHC16 chr10:99216534 3'AG 99216534 Downstream 58bp
chr1 16358235 16358235 1 + G A BLCA 16358254 + 16358234 16358274 41 TGAACCACAGCATCACCACACTGGCCAAGGACACGCCGCTG TAAACCACAGCATCACCACACTGGCCAAGGACACGCCGCTG < 41bp 1 0.415672822273736 1 0.430833905935287 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16358254 chr1:16358235 nonsynonymous SNV 0.652 3 2 hm5C_associated_SNPs_15832 0 0 0 0 2 CLCNKA chr1:16358205 3'AG 16358205 Downstream 31bp
chr1 16358235 16358235 1 + G A BLCA 16358254 + 16358234 16358274 41 TGAACCACAGCATCACCACACTGGCCAAGGACACGCCGCTG TAAACCACAGCATCACCACACTGGCCAAGGACACGCCGCTG < 41bp 1 0.415672822273736 1 0.430833905935287 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16358254 chr1:16358235 nonsynonymous SNV 0.652 3 2 hm5C_associated_SNPs_15832 0 0 0 0 2 CLCNKA chr1:16358289 5'GT 16358289 Upstream 55bp
chr1 110129355 110129355 1 + G A BLCA 110129354 + 110129334 110129374 41 CTTTATTTCTTTTTCAGAACCGAATGCATGAAAGCATGAAA CTTTATTTCTTTTTCAGAACCAAATGCATGAAAGCATGAAA < 41bp 1 0.182551871313574 1 0.327545553445816 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNAI3 ENSG00000065135 CDS Human protein_coding chr1:110129354 chr1:110129355 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_15833 0 0 1 0 1 GNAI3 chr1:110129351 3'AG 110129351 Downstream 5bp
chr4 79399118 79399118 1 + C T BLCA 79399112 + 79399092 79399132 41 GAATTCACCCAGGCGAAGGTCATTATCAACGATACCGAGGA GAATTCACCCAGGCGAAGGTCATTATTAACGATACCGAGGA < 41bp 1 0.0966006531121772 1 0.0729880034923553 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79399112 chr4:79399118 synonymous SNV . 0 27 hm5C_associated_SNPs_15834 0 0 1 0 1 FRAS1 chr4:79399215 5'GT 79399215 Upstream 98bp
chr13 103286387 103286387 1 + G A BLCA 103286380 + 103286360 103286400 41 TAACTGGACACTGAGAGGGACGCAGCTGATGAATGGAACAT TAACTGGACACTGAGAGGGACGCAGCTAATGAATGGAACAT < 41bp 1 0.432432646956509 1 0.0993805527687073 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TPP2 ENSG00000134900 CDS Human protein_coding chr13:103286380 chr13:103286387 synonymous SNV . 0 28 hm5C_associated_SNPs_15836 0 0 1 0 2 TPP2 chr13:103286300 3'AG 103286300 Downstream 88bp
chr13 103286387 103286387 1 + G A BLCA 103286380 + 103286360 103286400 41 TAACTGGACACTGAGAGGGACGCAGCTGATGAATGGAACAT TAACTGGACACTGAGAGGGACGCAGCTAATGAATGGAACAT < 41bp 1 0.432432646956509 1 0.0993805527687073 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TPP2 ENSG00000134900 CDS Human protein_coding chr13:103286380 chr13:103286387 synonymous SNV . 0 28 hm5C_associated_SNPs_15836 0 0 1 0 2 TPP2 chr13:103286448 5'GT 103286448 Upstream 62bp
chr19 48832670 48832670 1 + C T BLCA 48832653 + 48832633 48832673 41 TCATGGTGCTCTCCCTCATTCTCTGCTGTCTCTCCTTCATC TCATGGTGCTCTCCCTCATTCTCTGCTGTCTCTCCTTTATC < 41bp 1 0.452118348037622 1 0.0515997111797333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EMP3 ENSG00000142227 CDS Human protein_coding chr19:48832653 chr19:48832670 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_15837 0 0 1 0 2 EMP3 chr19:48832609 3'AG 48832609 Downstream 62bp
chr19 48832670 48832670 1 + C T BLCA 48832653 + 48832633 48832673 41 TCATGGTGCTCTCCCTCATTCTCTGCTGTCTCTCCTTCATC TCATGGTGCTCTCCCTCATTCTCTGCTGTCTCTCCTTTATC < 41bp 1 0.452118348037622 1 0.0515997111797333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EMP3 ENSG00000142227 CDS Human protein_coding chr19:48832653 chr19:48832670 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_15837 0 0 1 0 2 EMP3 chr19:48832749 5'GT 48832749 Upstream 80bp
chr2 202141587 202141587 1 + G A BLCA 202141594 + 202141574 202141614 41 AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAATCA AAAAGCAAACCTCAGGGATACTGTCTGATCATCAACAATCA < 41bp 1 0.231965525003329 1 0.101947814226151 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CASP8 ENSG00000064012 CDS Human protein_coding chr2:202141594 chr2:202141587 nonsynonymous SNV 0.925 5 14 hm5C_associated_SNPs_15839 0 0 1 1 1 CASP8 chr2:202141550 3'AG 202141550 Downstream 38bp
chr20 30915379 30915379 1 + G A BLCA 30915363 + 30915343 30915383 41 TGCAGTTCATTTCCAGGAACCAGCAGATGATGAAGCGGCCA TGCAGTTCATTTCCAGGAACCAGCAGATGATGAAGCAGCCA < 41bp 1 0.652487663431619 1 0.523473680019379 experiment 0.695024673136762 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30915363 chr20:30915379 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_15840 0 0 0 0 1 KIF3B chr20:30915359 3'AG 30915359 Downstream 21bp
chr2 135180409 135180409 1 + C T BLCA 135180429 + 135180409 135180449 41 CGGGCGGCCACATGTGTGGACTGTTGACCTCAACAATCAGG TGGGCGGCCACATGTGTGGACTGTTGACCTCAACAATCAGG < 41bp 1 0.0759455283788534 1 0.0186198055744171 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135180429 chr2:135180409 synonymous SNV . 0 1 hm5C_associated_SNPs_15841 0 0 1 0 2 MGAT5 chr2:135180374 3'AG 135180374 Downstream 36bp
chr2 135180409 135180409 1 + C T BLCA 135180429 + 135180409 135180449 41 CGGGCGGCCACATGTGTGGACTGTTGACCTCAACAATCAGG TGGGCGGCCACATGTGTGGACTGTTGACCTCAACAATCAGG < 41bp 1 0.0759455283788534 1 0.0186198055744171 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135180429 chr2:135180409 synonymous SNV . 0 1 hm5C_associated_SNPs_15841 0 0 1 0 2 MGAT5 chr2:135180490 5'GT 135180490 Upstream 82bp
chr2 162091940 162091940 1 + G A BLCA 162091953 + 162091933 162091973 41 AGTATGTGAATTCTGTCAAGCAGTTTTCCCACCATCCATTA AGTATGTAAATTCTGTCAAGCAGTTTTCCCACCATCCATTA < 41bp 1 0.45740469463462 1 0.0687772631645203 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TANK ENSG00000136560 CDS Human protein_coding chr2:162091953 chr2:162091940 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_15842 0 0 1 0 1 TANK chr2:162091853 3'AG 162091853 Downstream 88bp
chr14 105936422 105936422 1 + C A BLCA 105936408 + 105936388 105936428 41 ACCTCTGCCCACAGGAAGATCCGCAAGCTGCTCTCATCCTC ACCTCTGCCCACAGGAAGATCCGCAAGCTGCTCTAATCCTC < 41bp 1 0.615735274667729 1 0.310953289270401 experiment 0.768529450664542 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936408 chr14:105936422 stopgain 0.920 0 35 hm5C_associated_SNPs_15843 0 0 1 0 1 MTA1 chr14:105936402 3'AG 105936402 Downstream 21bp
chr22 19492958 19492958 1 + G A BLCA 19492963 + 19492943 19492983 41 CGGAACGAGGATGAGGAGAACACACTCTCCGTGGACTGCAC CGGAACGAGGATGAGAAGAACACACTCTCCGTGGACTGCAC < 41bp 1 0.378541422761141 1 0.0961433053016663 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19492963 chr22:19492958 nonsynonymous SNV 0.122 1 16 hm5C_associated_SNPs_15844 0 0 1 0 2 CDC45 chr22:19492885 3'AG 19492885 Downstream 74bp
chr22 19492958 19492958 1 + G A BLCA 19492963 + 19492943 19492983 41 CGGAACGAGGATGAGGAGAACACACTCTCCGTGGACTGCAC CGGAACGAGGATGAGAAGAACACACTCTCCGTGGACTGCAC < 41bp 1 0.378541422761141 1 0.0961433053016663 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19492963 chr22:19492958 nonsynonymous SNV 0.122 1 16 hm5C_associated_SNPs_15844 0 0 1 0 2 CDC45 chr22:19493004 5'GT 19493004 Upstream 47bp
chr3 120315375 120315375 1 + C G BLCA 120315381 + 120315361 120315401 41 ACGATCCCAACCGCCGAGGGCTCATCGTGAGTGTGGGGCCT ACGATCCCAACCGCGGAGGGCTCATCGTGAGTGTGGGGCCT < 41bp 1 0.483707463154367 1 0.0560665726661682 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFB4 ENSG00000065518 CDS Human protein_coding chr3:120315381 chr3:120315375 nonsynonymous SNV 0.051 0 15 hm5C_associated_SNPs_15845 0 0 1 0 1 NDUFB4 chr3:120315386 5'GT 120315386 Upstream 12bp
chr22 19492957 19492957 1 + G A BLCA 19492963 + 19492943 19492983 41 CGGAACGAGGATGAGGAGAACACACTCTCCGTGGACTGCAC CGGAACGAGGATGAAGAGAACACACTCTCCGTGGACTGCAC < 41bp 1 0.391118830831495 1 0.109330862760544 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19492963 chr22:19492957 synonymous SNV . 0 15 hm5C_associated_SNPs_15846 0 0 1 0 2 CDC45 chr22:19492885 3'AG 19492885 Downstream 73bp
chr22 19492957 19492957 1 + G A BLCA 19492963 + 19492943 19492983 41 CGGAACGAGGATGAGGAGAACACACTCTCCGTGGACTGCAC CGGAACGAGGATGAAGAGAACACACTCTCCGTGGACTGCAC < 41bp 1 0.391118830831495 1 0.109330862760544 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19492963 chr22:19492957 synonymous SNV . 0 15 hm5C_associated_SNPs_15846 0 0 1 0 2 CDC45 chr22:19493004 5'GT 19493004 Upstream 48bp
chr15 50789403 50789403 1 + C T BLCA 50789404 + 50789384 50789424 41 AGAAATCTGGAAGTTACCACCTGTGCTTTTAGTGCATCTGA AGAAATCTGGAAGTTACCATCTGTGCTTTTAGTGCATCTGA < 41bp 1 0.369821799783676 1 0.298350274562836 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control USP8 ENSG00000138592 CDS Human protein_coding chr15:50789404 chr15:50789403 nonsynonymous SNV 0.996 2 20 hm5C_associated_SNPs_15847 0 0 1 0 1 USP8 chr15:50789428 5'GT 50789428 Upstream 26bp
chr15 63354438 63354438 1 + G C BLCA 63354456 + 63354436 63354476 41 ATGAGGAAGAGATCAAGGTCCTTTCCGACAAGCTGAAGGAG ATCAGGAAGAGATCAAGGTCCTTTCCGACAAGCTGAAGGAG < 41bp 1 0.0681104172268937 1 0.131077110767365 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPM1 ENSG00000140416 CDS Human protein_coding chr15:63354456 chr15:63354438 nonsynonymous SNV 0.995 5 3 hm5C_associated_SNPs_15848 0 0 1 0 2 TPM1 chr15:63354414 3'AG 63354414 Downstream 25bp
chr15 63354438 63354438 1 + G C BLCA 63354456 + 63354436 63354476 41 ATGAGGAAGAGATCAAGGTCCTTTCCGACAAGCTGAAGGAG ATCAGGAAGAGATCAAGGTCCTTTCCGACAAGCTGAAGGAG < 41bp 1 0.0681104172268937 1 0.131077110767365 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPM1 ENSG00000140416 CDS Human protein_coding chr15:63354456 chr15:63354438 nonsynonymous SNV 0.995 5 3 hm5C_associated_SNPs_15848 0 0 1 0 2 TPM1 chr15:63354476 5'GT 63354476 Upstream 39bp
chr7 87530130 87530130 1 + G A BLCA 87530114 + 87530094 87530134 41 CGATAAGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAG CGATAAGTATGGTGGAACCTCAATTCAACTCCAGTTAAAAG < 41bp 1 0.140291332286269 1 0.290312856435776 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530114 chr7:87530130 synonymous SNV . 0 37 hm5C_associated_SNPs_15849 0 0 1 0 2 DBF4 chr7:87530079 3'AG 87530079 Downstream 52bp
chr7 87530130 87530130 1 + G A BLCA 87530114 + 87530094 87530134 41 CGATAAGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAG CGATAAGTATGGTGGAACCTCAATTCAACTCCAGTTAAAAG < 41bp 1 0.140291332286269 1 0.290312856435776 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530114 chr7:87530130 synonymous SNV . 0 37 hm5C_associated_SNPs_15849 0 0 1 0 2 DBF4 chr7:87530193 5'GT 87530193 Upstream 64bp
chr7 87530130 87530130 1 + G A BLCA 87530119 + 87530099 87530139 41 AGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAGAGAAG AGTATGGTGGAACCTCAATTCAACTCCAGTTAAAAGAGAAG < 41bp 1 0.271970609201776 1 0.575564980506897 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530119 chr7:87530130 synonymous SNV . 0 32 hm5C_associated_SNPs_15850 0 0 1 0 2 DBF4 chr7:87530079 3'AG 87530079 Downstream 52bp
chr7 87530130 87530130 1 + G A BLCA 87530119 + 87530099 87530139 41 AGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAGAGAAG AGTATGGTGGAACCTCAATTCAACTCCAGTTAAAAGAGAAG < 41bp 1 0.271970609201776 1 0.575564980506897 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530119 chr7:87530130 synonymous SNV . 0 32 hm5C_associated_SNPs_15850 0 0 1 0 2 DBF4 chr7:87530193 5'GT 87530193 Upstream 64bp
chr7 87530130 87530130 1 + G A BLCA 87530122 + 87530102 87530142 41 ATGGTGGAACCTCAATTCAACTCCAGTTGAAAGAGAAGAAG ATGGTGGAACCTCAATTCAACTCCAGTTAAAAGAGAAGAAG < 41bp 1 0.756733049522221 1 0.528443515300751 experiment 0.486533900955558 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530122 chr7:87530130 synonymous SNV . 0 29 hm5C_associated_SNPs_15851 0 0 1 0 2 DBF4 chr7:87530079 3'AG 87530079 Downstream 52bp
chr7 87530130 87530130 1 + G A BLCA 87530122 + 87530102 87530142 41 ATGGTGGAACCTCAATTCAACTCCAGTTGAAAGAGAAGAAG ATGGTGGAACCTCAATTCAACTCCAGTTAAAAGAGAAGAAG < 41bp 1 0.756733049522221 1 0.528443515300751 experiment 0.486533900955558 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530122 chr7:87530130 synonymous SNV . 0 29 hm5C_associated_SNPs_15851 0 0 1 0 2 DBF4 chr7:87530193 5'GT 87530193 Upstream 64bp
chr7 87530130 87530130 1 + G A BLCA 87530124 + 87530104 87530144 41 GGTGGAACCTCAATTCAACTCCAGTTGAAAGAGAAGAAGAA GGTGGAACCTCAATTCAACTCCAGTTAAAAGAGAAGAAGAA < 41bp 1 0.325987975256505 1 0.695017576217651 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530124 chr7:87530130 synonymous SNV . 0 27 hm5C_associated_SNPs_15852 0 0 1 0 2 DBF4 chr7:87530079 3'AG 87530079 Downstream 52bp
chr7 87530130 87530130 1 + G A BLCA 87530124 + 87530104 87530144 41 GGTGGAACCTCAATTCAACTCCAGTTGAAAGAGAAGAAGAA GGTGGAACCTCAATTCAACTCCAGTTAAAAGAGAAGAAGAA < 41bp 1 0.325987975256505 1 0.695017576217651 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530124 chr7:87530130 synonymous SNV . 0 27 hm5C_associated_SNPs_15852 0 0 1 0 2 DBF4 chr7:87530193 5'GT 87530193 Upstream 64bp
chr22 19492955 19492955 1 + G A BLCA 19492963 + 19492943 19492983 41 CGGAACGAGGATGAGGAGAACACACTCTCCGTGGACTGCAC CGGAACGAGGATAAGGAGAACACACTCTCCGTGGACTGCAC < 41bp 1 0.31772105774713 1 0.139867275953293 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19492963 chr22:19492955 nonsynonymous SNV 0.114 1 13 hm5C_associated_SNPs_15853 0 0 1 0 2 CDC45 chr22:19492885 3'AG 19492885 Downstream 71bp
chr22 19492955 19492955 1 + G A BLCA 19492963 + 19492943 19492983 41 CGGAACGAGGATGAGGAGAACACACTCTCCGTGGACTGCAC CGGAACGAGGATAAGGAGAACACACTCTCCGTGGACTGCAC < 41bp 1 0.31772105774713 1 0.139867275953293 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19492963 chr22:19492955 nonsynonymous SNV 0.114 1 13 hm5C_associated_SNPs_15853 0 0 1 0 2 CDC45 chr22:19493004 5'GT 19493004 Upstream 50bp
chr13 114203816 114203816 1 + G C BLCA 114203825 + 114203805 114203845 41 TGCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCA TGCAATCACGACGTGTGTGCCCAGACCGGAGAGACGGTCCA < 41bp 1 0.658071850829267 1 0.172605097293854 experiment 0.683856298341467 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114203825 chr13:114203816 nonsynonymous SNV 0.022 1 12 hm5C_associated_SNPs_15854 0 0 0 0 1 TMCO3 chr13:114203740 3'AG 114203740 Downstream 77bp
chr13 114203816 114203816 1 + G C BLCA 114203826 + 114203806 114203846 41 GCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCAG GCAATCACGACGTGTGTGCCCAGACCGGAGAGACGGTCCAG < 41bp 1 0.60251570044658 1 0.136995702981949 experiment 0.79496859910684 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114203826 chr13:114203816 nonsynonymous SNV 0.022 1 11 hm5C_associated_SNPs_15855 0 0 0 0 1 TMCO3 chr13:114203740 3'AG 114203740 Downstream 77bp
chr16 2577863 2577863 1 + C T BLCA 2577853 + 2577833 2577873 41 CACCTCCGCTCCTTCGAGGCCGATGCCTTCCAGGACTTGCT CACCTCCGCTCCTTCGAGGCCGATGCCTTCTAGGACTTGCT < 41bp 1 0.0942658306475221 1 0.107930779457092 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2577853 chr16:2577863 stopgain 0.571 0 31 hm5C_associated_SNPs_15856 0 0 1 0 1 AMDHD2 chr16:2577774 3'AG 2577774 Downstream 90bp
chr6 29911264 29911264 1 + G A BLCA 29911265 + 29911245 29911285 41 GCCTACCTGGATGGCACGTGCGTGGAGTGGCTCCGCAGATA GCCTACCTGGATGGCACGTACGTGGAGTGGCTCCGCAGATA < 41bp 1 0.604376856359433 1 0.334472835063934 experiment 0.791246287281134 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911265 chr6:29911264 nonsynonymous SNV 0.002 3 20 hm5C_associated_SNPs_15857 0 0 0 0 1 HLA-A chr6:29911320 5'GT 29911320 Upstream 57bp
chr6 29911264 29911264 1 + G A BLCA 29911277 + 29911257 29911297 41 GGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGG GGCACGTACGTGGAGTGGCTCCGCAGATACCTGGAGAACGG < 41bp 1 0.530873558464868 1 0.10897770524025 experiment 0.938252883070264 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911277 chr6:29911264 nonsynonymous SNV 0.002 3 8 hm5C_associated_SNPs_15858 0 0 0 0 1 HLA-A chr6:29911320 5'GT 29911320 Upstream 57bp
chr6 29911264 29911264 1 + G A BLCA 29911278 + 29911258 29911298 41 GCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGG GCACGTACGTGGAGTGGCTCCGCAGATACCTGGAGAACGGG < 41bp 1 0.449044924160496 1 0.425369679927826 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911278 chr6:29911264 nonsynonymous SNV 0.002 3 7 hm5C_associated_SNPs_15859 0 0 0 0 1 HLA-A chr6:29911320 5'GT 29911320 Upstream 57bp
chr12 56531992 56531992 1 + C G BLCA 56531999 + 56531979 56532019 41 GAGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCG GAGGATGTCCCATGTGGCCGCCTGCACTTGCGCCTGGAGCG < 41bp 1 0.0656297081013757 1 0.699091017246246 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56531999 chr12:56531992 nonsynonymous SNV 0.994 4 14 hm5C_associated_SNPs_15861 0 0 1 0 2 ESYT1 chr12:56531967 3'AG 56531967 Downstream 26bp
chr12 56531992 56531992 1 + C G BLCA 56531999 + 56531979 56532019 41 GAGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCG GAGGATGTCCCATGTGGCCGCCTGCACTTGCGCCTGGAGCG < 41bp 1 0.0656297081013757 1 0.699091017246246 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56531999 chr12:56531992 nonsynonymous SNV 0.994 4 14 hm5C_associated_SNPs_15861 0 0 1 0 2 ESYT1 chr12:56532056 5'GT 56532056 Upstream 65bp
chr12 56531992 56531992 1 + C G BLCA 56532000 + 56531980 56532020 41 AGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCGT AGGATGTCCCATGTGGCCGCCTGCACTTGCGCCTGGAGCGT < 41bp 1 0.599953378904983 1 0.716411292552948 experiment 0.800093242190033 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532000 chr12:56531992 nonsynonymous SNV 0.994 4 13 hm5C_associated_SNPs_15862 0 0 1 0 2 ESYT1 chr12:56531967 3'AG 56531967 Downstream 26bp
chr12 56531992 56531992 1 + C G BLCA 56532000 + 56531980 56532020 41 AGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCGT AGGATGTCCCATGTGGCCGCCTGCACTTGCGCCTGGAGCGT < 41bp 1 0.599953378904983 1 0.716411292552948 experiment 0.800093242190033 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532000 chr12:56531992 nonsynonymous SNV 0.994 4 13 hm5C_associated_SNPs_15862 0 0 1 0 2 ESYT1 chr12:56532056 5'GT 56532056 Upstream 65bp
chr16 1551483 1551483 1 + C T BLCA 1551467 + 1551447 1551487 41 GCTGCTGGCCTTGGCCTCCCCCCAGCCTGCGGGTGACGGCG GCTGCTGGCCTTGGCCTCCCCCCAGCCTGCGGGTGATGGCG < 41bp 1 0.306542449292005 1 0.250790596008301 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1551467 chr16:1551483 synonymous SNV . 0 37 hm5C_associated_SNPs_15866 0 0 0 0 2 TELO2 chr16:1551421 3'AG 1551421 Downstream 63bp
chr16 1551483 1551483 1 + C T BLCA 1551467 + 1551447 1551487 41 GCTGCTGGCCTTGGCCTCCCCCCAGCCTGCGGGTGACGGCG GCTGCTGGCCTTGGCCTCCCCCCAGCCTGCGGGTGATGGCG < 41bp 1 0.306542449292005 1 0.250790596008301 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1551467 chr16:1551483 synonymous SNV . 0 37 hm5C_associated_SNPs_15866 0 0 0 0 2 TELO2 chr16:1551500 5'GT 1551500 Upstream 18bp
chr11 4091330 4091330 1 + G C BLCA 4091338 + 4091318 4091358 41 GGCTGCTGGTTTGCCTATATCCAGAACCGTTACTCCAAGGA GGCTGCTGGTTTCCCTATATCCAGAACCGTTACTCCAAGGA < 41bp 1 0.634927517762878 1 0.738671839237213 experiment 0.730144964474243 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STIM1 ENSG00000167323 CDS Human protein_coding chr11:4091338 chr11:4091330 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_15867 0 0 1 0 1 STIM1 chr11:4091256 3'AG 4091256 Downstream 75bp
chr3 51673450 51673450 1 + G T BLCA 51673466 + 51673446 51673486 41 CCCTGATGTGCTGTATGAAGCCCTTCAGAAGGAGAGCTTGG CCCTTATGTGCTGTATGAAGCCCTTCAGAAGGAGAGCTTGG < 41bp 1 0.192283676364732 1 0.0738855004310608 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51673466 chr3:51673450 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_15868 0 0 1 0 1 RAD54L2 chr3:51673435 3'AG 51673435 Downstream 16bp
chr14 89336504 89336504 1 + C G BLCA 89336501 + 89336481 89336521 41 GCATGCATTGGAAGCAACCACTTCTATTCTGATCAGCCAGA GCATGCATTGGAAGCAACCACTTGTATTCTGATCAGCCAGA < 41bp 1 0.402821941191751 1 0.0703953504562378 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTC8 ENSG00000165533 CDS Human protein_coding chr14:89336501 chr14:89336504 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_15871 0 0 1 0 1 TTC8 chr14:89336542 5'GT 89336542 Upstream 39bp
chr1 153713793 153713793 1 + C A BLCA 153713778 + 153713758 153713798 41 CAGGTGTGCAAAGGCCTCCCCCAGCATGAAGAAATCTGCCT CAGGTGTGCAAAGGCCTCCCCCAGCATGAAGAAATATGCCT < 41bp 1 0.125587490288586 1 0.257445573806763 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control INTS3 ENSG00000143624 CDS Human protein_coding chr1:153713778 chr1:153713793 synonymous SNV . 0 36 hm5C_associated_SNPs_15875 0 0 1 0 2 INTS3 chr1:153713761 3'AG 153713761 Downstream 33bp
chr1 153713793 153713793 1 + C A BLCA 153713778 + 153713758 153713798 41 CAGGTGTGCAAAGGCCTCCCCCAGCATGAAGAAATCTGCCT CAGGTGTGCAAAGGCCTCCCCCAGCATGAAGAAATATGCCT < 41bp 1 0.125587490288586 1 0.257445573806763 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control INTS3 ENSG00000143624 CDS Human protein_coding chr1:153713778 chr1:153713793 synonymous SNV . 0 36 hm5C_associated_SNPs_15875 0 0 1 0 2 INTS3 chr1:153713844 5'GT 153713844 Upstream 52bp
chr10 73111520 73111520 1 + G C BLCA 73111516 + 73111496 73111536 41 CGGCATGACCGGCTCCTTTCCTATGAGGAACTCCCAGGCAC CGGCATGACCGGCTCCTTTCCTATCAGGAACTCCCAGGCAC < 41bp 1 0.260680317260144 1 0.0694341063499451 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73111516 chr10:73111520 nonsynonymous SNV 0.984 1 25 hm5C_associated_SNPs_15880 0 0 0 0 1 SLC29A3 chr10:73111545 5'GT 73111545 Upstream 26bp
chr2 97464926 97464926 1 + G A BLCA 97464916 + 97464896 97464936 41 AGTACTACGCCCGCCATTACCTGTACACCCGAAATAAGCCG AGTACTACGCCCGCCATTACCTGTACACCCAAAATAAGCCG < 41bp 1 0.648265494784293 1 0.769059181213379 experiment 0.703469010431415 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CNNM4 ENSG00000158158 CDS Human protein_coding chr2:97464916 chr2:97464926 nonsynonymous SNV 0.995 3 31 hm5C_associated_SNPs_15881 0 0 0 0 1 CNNM4 chr2:97464963 5'GT 97464963 Upstream 38bp
chr1 65871755 65871755 1 + C T BLCA 65871740 + 65871720 65871760 41 CCCCACTCCTCTCCCCAGAACCGACCCAACTACAACGTGAG CCCCACTCCTCTCCCCAGAACCGACCCAACTACAATGTGAG < 41bp 1 0.0473732700862266 1 0.081075131893158 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65871740 chr1:65871755 synonymous SNV . 0 36 hm5C_associated_SNPs_15882 0 0 0 0 1 DNAJC6 chr1:65871816 5'GT 65871816 Upstream 62bp
chr13 113487179 113487179 1 + C T BLCA 113487177 + 113487157 113487197 41 GAACTGCTTTTTTATAGGAGCGCGAGGAGCTGTTTTTCCGG GAACTGCTTTTTTATAGGAGCGTGAGGAGCTGTTTTTCCGG < 41bp 1 0.384798965841986 1 0.405620753765106 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP11A ENSG00000068650 CDS Human protein_coding chr13:113487177 chr13:113487179 synonymous SNV . 0 23 hm5C_associated_SNPs_15885 0 0 1 0 1 ATP11A chr13:113487174 3'AG 113487174 Downstream 6bp
chr14 102466402 102466402 1 + G C BLCA 102466397 + 102466377 102466417 41 AAGTTTGGTAGGCTGAAGGACGACAGAGAGAAGTGTGCAAA AAGTTTGGTAGGCTGAAGGACGACACAGAGAAGTGTGCAAA < 41bp 1 0.225085861674867 1 0.219928681850433 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466397 chr14:102466402 nonsynonymous SNV 0.976 1 26 hm5C_associated_SNPs_15886 0 0 1 0 2 DYNC1H1 chr14:102466326 3'AG 102466326 Downstream 77bp
chr14 102466402 102466402 1 + G C BLCA 102466397 + 102466377 102466417 41 AAGTTTGGTAGGCTGAAGGACGACAGAGAGAAGTGTGCAAA AAGTTTGGTAGGCTGAAGGACGACACAGAGAAGTGTGCAAA < 41bp 1 0.225085861674867 1 0.219928681850433 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466397 chr14:102466402 nonsynonymous SNV 0.976 1 26 hm5C_associated_SNPs_15886 0 0 1 0 2 DYNC1H1 chr14:102466481 5'GT 102466481 Upstream 80bp
chr14 102466402 102466402 1 + G C BLCA 102466414 + 102466394 102466434 41 GGACGACAGAGAGAAGTGTGCAAAGGCCAAGGAGGCGCTGG GGACGACACAGAGAAGTGTGCAAAGGCCAAGGAGGCGCTGG < 41bp 1 0.174640720183211 1 0.606931746006012 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466414 chr14:102466402 nonsynonymous SNV 0.976 1 9 hm5C_associated_SNPs_15887 0 0 1 0 2 DYNC1H1 chr14:102466326 3'AG 102466326 Downstream 77bp
chr14 102466402 102466402 1 + G C BLCA 102466414 + 102466394 102466434 41 GGACGACAGAGAGAAGTGTGCAAAGGCCAAGGAGGCGCTGG GGACGACACAGAGAAGTGTGCAAAGGCCAAGGAGGCGCTGG < 41bp 1 0.174640720183211 1 0.606931746006012 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466414 chr14:102466402 nonsynonymous SNV 0.976 1 9 hm5C_associated_SNPs_15887 0 0 1 0 2 DYNC1H1 chr14:102466481 5'GT 102466481 Upstream 80bp
chr7 66262459 66262459 1 + G A BLCA 66262475 + 66262455 66262495 41 TGATGAGAAGAAAGATCTTGCCATTCAAAAGAGAATCAGGT TGATAAGAAGAAAGATCTTGCCATTCAAAAGAGAATCAGGT < 41bp 1 0.0140075260646658 1 0.125457316637039 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABGEF1 ENSG00000154710;ENSG00000243335 CDS Human other chr7:66262475 chr7:66262459 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_15888 0 0 0 0 2 RABGEF1 chr7:66262361 3'AG 66262361 Downstream 99bp
chr7 66262459 66262459 1 + G A BLCA 66262475 + 66262455 66262495 41 TGATGAGAAGAAAGATCTTGCCATTCAAAAGAGAATCAGGT TGATAAGAAGAAAGATCTTGCCATTCAAAAGAGAATCAGGT < 41bp 1 0.0140075260646658 1 0.125457316637039 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABGEF1 ENSG00000154710;ENSG00000243335 CDS Human other chr7:66262475 chr7:66262459 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_15888 0 0 0 0 2 RABGEF1 chr7:66262493 5'GT 66262493 Upstream 35bp
chr7 66262459 66262459 1 + G A BLCA 66262476 + 66262456 66262496 41 GATGAGAAGAAAGATCTTGCCATTCAAAAGAGAATCAGGTA GATAAGAAGAAAGATCTTGCCATTCAAAAGAGAATCAGGTA < 41bp 1 0.0486903002860411 1 0.293330371379852 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABGEF1 ENSG00000154710;ENSG00000243335 CDS Human other chr7:66262476 chr7:66262459 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_15889 0 0 0 0 2 RABGEF1 chr7:66262361 3'AG 66262361 Downstream 99bp
chr7 66262459 66262459 1 + G A BLCA 66262476 + 66262456 66262496 41 GATGAGAAGAAAGATCTTGCCATTCAAAAGAGAATCAGGTA GATAAGAAGAAAGATCTTGCCATTCAAAAGAGAATCAGGTA < 41bp 1 0.0486903002860411 1 0.293330371379852 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABGEF1 ENSG00000154710;ENSG00000243335 CDS Human other chr7:66262476 chr7:66262459 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_15889 0 0 0 0 2 RABGEF1 chr7:66262493 5'GT 66262493 Upstream 35bp
chr10 102795805 102795805 1 + C G BLCA 102795823 + 102795803 102795843 41 TTCAATGCCATTGTTAACTACTCCAACCGCAGTGGTGACAC TTGAATGCCATTGTTAACTACTCCAACCGCAGTGGTGACAC < 41bp 1 0.761655863290592 1 0.972516298294067 experiment 0.476688273418816 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SFXN3 ENSG00000107819 CDS Human protein_coding chr10:102795823 chr10:102795805 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_15891 0 0 1 0 2 SFXN3 chr10:102795760 3'AG 102795760 Downstream 46bp
chr10 102795805 102795805 1 + C G BLCA 102795823 + 102795803 102795843 41 TTCAATGCCATTGTTAACTACTCCAACCGCAGTGGTGACAC TTGAATGCCATTGTTAACTACTCCAACCGCAGTGGTGACAC < 41bp 1 0.761655863290592 1 0.972516298294067 experiment 0.476688273418816 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SFXN3 ENSG00000107819 CDS Human protein_coding chr10:102795823 chr10:102795805 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_15891 0 0 1 0 2 SFXN3 chr10:102795858 5'GT 102795858 Upstream 54bp
chr17 37360850 37360850 1 + G C BLCA 37360846 + 37360826 37360866 41 CCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCATCA CCGTGAAGAGCGCCTCCAGGCCAACAAGGAGGAGATCATCA < 41bp 1 0.135292852043701 1 0.0968330502510071 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360846 chr17:37360850 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_15892 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 73bp
chr17 37360850 37360850 1 + G C BLCA 37360862 + 37360842 37360882 41 CAGGCCAAGAAGGAGGAGATCATCAAGACTTTATCCAAGGA CAGGCCAACAAGGAGGAGATCATCAAGACTTTATCCAAGGA < 41bp 1 0.443549822769708 1 0.126711755990982 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360862 chr17:37360850 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_15893 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 73bp
chr11 209946 209946 1 + C T BLCA 209927 + 209907 209947 41 GCTCCTTCCTTCCCAAGAGACTGAGCGGGCCATGGAGATCC GCTCCTTCCTTCCCAAGAGACTGAGCGGGCCATGGAGATTC < 41bp 1 0.608869494550273 1 0.122648984193802 experiment 0.782261010899453 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:209927 chr11:209946 synonymous SNV . 0 40 hm5C_associated_SNPs_15895 0 0 1 0 1 RIC8A chr11:210000 5'GT 210000 Upstream 55bp
chr19 45490661 45490661 1 + G A BLCA 45490656 + 45490636 45490676 41 TGATGAGTTGTACGAGCAGTCAGATGAGGAGCAGGACTCGG TGATGAGTTGTACGAGCAGTCAGATAAGGAGCAGGACTCGG < 41bp 1 0.606328723303943 1 0.461503803730011 experiment 0.787342553392114 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45490656 chr19:45490661 nonsynonymous SNV 0.998 2 26 hm5C_associated_SNPs_15896 0 0 1 0 1 CLPTM1 chr19:45490681 5'GT 45490681 Upstream 21bp
chr22 18979420 18979420 1 + C T BLCA 18979435 + 18979415 18979455 41 AGGCCCGTCCTGGTGGAGTTCACCCTGCTGGAGATGGAGAA AGGCCTGTCCTGGTGGAGTTCACCCTGCTGGAGATGGAGAA < 41bp 1 0.255142952814818 1 0.258341133594513 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979435 chr22:18979420 . . 0 6 hm5C_associated_SNPs_15897 0 0 1 1 1 DGCR5 chr22:18979330 3'AG 18979330 Downstream 91bp
chr11 61252187 61252187 1 + G C BLCA 61252171 + 61252151 61252191 41 TCCTCCCAGGTCCGGAAGGTCCATTTCGACACCCAGGAGCA TCCTCCCAGGTCCGGAAGGTCCATTTCGACACCCAGCAGCA < 41bp 1 0.105975333637273 1 0.028741329908371 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61252171 chr11:61252187 nonsynonymous SNV 0.952 0 37 hm5C_associated_SNPs_15898 0 0 0 0 1 PPP1R32 chr11:61252160 3'AG 61252160 Downstream 28bp
chr2 204078320 204078320 1 + C G BLCA 204078310 + 204078290 204078330 41 GTTTGTGTCACCAAAGAATACAGCCATATTCTTGTAGGTTT GTTTGTGTCACCAAAGAATACAGCCATATTGTTGTAGGTTT < 41bp 1 0.258117381866941 1 0.110039502382278 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204078310 chr2:204078320 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_15899 0 0 1 0 2 NBEAL1 chr2:204078241 3'AG 204078241 Downstream 80bp
chr2 204078320 204078320 1 + C G BLCA 204078310 + 204078290 204078330 41 GTTTGTGTCACCAAAGAATACAGCCATATTCTTGTAGGTTT GTTTGTGTCACCAAAGAATACAGCCATATTGTTGTAGGTTT < 41bp 1 0.258117381866941 1 0.110039502382278 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204078310 chr2:204078320 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_15899 0 0 1 0 2 NBEAL1 chr2:204078376 5'GT 204078376 Upstream 57bp
chr17 38318321 38318321 1 + G A BLCA 38318303 + 38318283 38318323 41 TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGAT TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAAAT < 41bp 1 0.123526565794653 1 0.131465137004852 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318303 chr17:38318321 nonsynonymous SNV 0.995 4 39 hm5C_associated_SNPs_15900 0 0 1 0 2 CASC3 chr17:38318255 3'AG 38318255 Downstream 67bp
chr17 38318321 38318321 1 + G A BLCA 38318303 + 38318283 38318323 41 TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGAT TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAAAT < 41bp 1 0.123526565794653 1 0.131465137004852 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318303 chr17:38318321 nonsynonymous SNV 0.995 4 39 hm5C_associated_SNPs_15900 0 0 1 0 2 CASC3 chr17:38318406 5'GT 38318406 Upstream 86bp
chr1 173454533 173454533 1 + G A BLCA 173454543 + 173454523 173454563 41 AGAGCCCACAGAAAAGTTACCTTTTCCCATCATCGATGATA AGAGCCCACAAAAAAGTTACCTTTTCCCATCATCGATGATA < 41bp 1 0.0710290653637307 1 0.019072026014328 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173454543 chr1:173454533 nonsynonymous SNV 0.992 1 11 hm5C_associated_SNPs_15901 0 0 1 0 1 PRDX6 chr1:173454500 3'AG 173454500 Downstream 34bp
chr3 124456779 124456779 1 + C G BLCA 124456785 + 124456765 124456805 41 GCACCCAAAGAACTCAGCTTCGGTGCACGTGCAGAGCTGCC GCACCCAAAGAACTGAGCTTCGGTGCACGTGCAGAGCTGCC < 41bp 1 0.382679621879355 1 0.838840067386627 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UMPS ENSG00000114491 CDS Human protein_coding chr3:124456785 chr3:124456779 nonsynonymous SNV . 0 15 hm5C_associated_SNPs_15902 0 0 1 0 1 UMPS chr3:124456762 3'AG 124456762 Downstream 18bp
chr4 57179512 57179512 1 + G A BLCA 57179501 + 57179481 57179521 41 AGCACAAGCTGGCTGTTAAGCCAAAAAAACAGAGGGTGTCA AGCACAAGCTGGCTGTTAAGCCAAAAAAACAAAGGGTGTCA < 41bp 1 0.435164512589285 1 0.507655024528503 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57179501 chr4:57179512 synonymous SNV . 0 32 hm5C_associated_SNPs_15903 0 0 0 0 1 KIAA1211 chr4:57179545 5'GT 57179545 Upstream 34bp
chr12 56663988 56663988 1 + G C BLCA 56663999 + 56663979 56664019 41 ATGTTTTTTGATGAGGTTGTCAAACAGAATGTTGCTGCCTT ATGTTTTTTCATGAGGTTGTCAAACAGAATGTTGCTGCCTT < 41bp 1 0.343785761401619 1 0.489324659109116 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ10A ENSG00000135469 CDS Human protein_coding chr12:56663999 chr12:56663988 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_15904 0 0 1 0 1 COQ10A chr12:56663934 3'AG 56663934 Downstream 55bp
chr10 17276805 17276805 1 + C T BLCA 17276817 + 17276797 17276837 41 GTGGATGCCCTTAAAGGAACCGTGAGTACCAACCCTGCAGT GTGGATGCTCTTAAAGGAACCGTGAGTACCAACCCTGCAGT < 41bp 1 0.727538194039497 1 0.704128921031952 experiment 0.544923611921006 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276817 chr10:17276805 synonymous SNV . 0 9 hm5C_associated_SNPs_15905 0 0 1 0 1 VIM chr10:17276817 5'GT 17276817 Upstream 13bp
chr1 145509174 145509174 1 + G A BLCA 145509172 + 145509152 145509192 41 TTCTTTTTCCCTAGAGGTGGCCGAAGACGCAGCAGAAGTCC TTCTTTTTCCCTAGAGGTGGCCAAAGACGCAGCAGAAGTCC < 41bp 1 0.147341168132655 1 0.393438577651978 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM8A ENSG00000131795 CDS Human other chr1:145509172 chr1:145509174 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_15907 0 0 1 0 1 RBM8A chr1:145509166 3'AG 145509166 Downstream 9bp
chr1 145509174 145509174 1 + G A BLCA 145509191 + 145509171 145509211 41 GCCGAAGACGCAGCAGAAGTCCAGACCGGAGACGTCGCTGA GCCAAAGACGCAGCAGAAGTCCAGACCGGAGACGTCGCTGA < 41bp 1 0.336193745585925 1 0.337057650089264 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM8A ENSG00000131795 CDS Human other chr1:145509191 chr1:145509174 nonsynonymous SNV . 0 4 hm5C_associated_SNPs_15908 0 0 1 0 1 RBM8A chr1:145509166 3'AG 145509166 Downstream 9bp
chr1 22307603 22307603 1 + C T BLCA 22307588 + 22307568 22307608 41 GACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT GACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATTCCCAT < 41bp 1 0.199527152687058 1 0.107224762439728 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307588 chr1:22307603 synonymous SNV . 0 36 hm5C_associated_SNPs_15910 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 73bp
chr1 22307603 22307603 1 + C T BLCA 22307588 + 22307568 22307608 41 GACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT GACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATTCCCAT < 41bp 1 0.199527152687058 1 0.107224762439728 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307588 chr1:22307603 synonymous SNV . 0 36 hm5C_associated_SNPs_15910 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 63bp
chr1 22307603 22307603 1 + C T BLCA 22307589 + 22307569 22307609 41 ACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC ACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATTCCCATC < 41bp 1 0.575853875000548 1 0.410841554403305 experiment 0.848292249998904 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307589 chr1:22307603 synonymous SNV . 0 35 hm5C_associated_SNPs_15911 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 73bp
chr1 22307603 22307603 1 + C T BLCA 22307589 + 22307569 22307609 41 ACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC ACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATTCCCATC < 41bp 1 0.575853875000548 1 0.410841554403305 experiment 0.848292249998904 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307589 chr1:22307603 synonymous SNV . 0 35 hm5C_associated_SNPs_15911 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 63bp
chr1 22307603 22307603 1 + C T BLCA 22307590 + 22307570 22307610 41 CCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA CCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATTCCCATCA < 41bp 1 0.397323000529476 1 0.145705580711365 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307590 chr1:22307603 synonymous SNV . 0 34 hm5C_associated_SNPs_15912 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 73bp
chr1 22307603 22307603 1 + C T BLCA 22307590 + 22307570 22307610 41 CCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA CCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATTCCCATCA < 41bp 1 0.397323000529476 1 0.145705580711365 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307590 chr1:22307603 synonymous SNV . 0 34 hm5C_associated_SNPs_15912 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 63bp
chr1 22307603 22307603 1 + C T BLCA 22307591 + 22307571 22307611 41 CGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA CGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATTCCCATCAA < 41bp 1 0.60468706985587 1 0.137883871793747 experiment 0.790625860288259 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307591 chr1:22307603 synonymous SNV . 0 33 hm5C_associated_SNPs_15913 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 73bp
chr1 22307603 22307603 1 + C T BLCA 22307591 + 22307571 22307611 41 CGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA CGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATTCCCATCAA < 41bp 1 0.60468706985587 1 0.137883871793747 experiment 0.790625860288259 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307591 chr1:22307603 synonymous SNV . 0 33 hm5C_associated_SNPs_15913 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 63bp
chr1 22307603 22307603 1 + C T BLCA 22307595 + 22307575 22307615 41 CTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAACTCT CTGTGAAGGAGGGCCCCGAGCAGGTGATTCCCATCAACTCT < 41bp 1 0.763146702377417 1 0.845051944255829 experiment 0.473706595245166 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307595 chr1:22307603 synonymous SNV . 0 29 hm5C_associated_SNPs_15914 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 73bp
chr1 22307603 22307603 1 + C T BLCA 22307595 + 22307575 22307615 41 CTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAACTCT CTGTGAAGGAGGGCCCCGAGCAGGTGATTCCCATCAACTCT < 41bp 1 0.763146702377417 1 0.845051944255829 experiment 0.473706595245166 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307595 chr1:22307603 synonymous SNV . 0 29 hm5C_associated_SNPs_15914 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 63bp
chr1 22307603 22307603 1 + C T BLCA 22307604 + 22307584 22307624 41 AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTC AGGGCCCCGAGCAGGTGATTCCCATCAACTCTGGGGACCTC < 41bp 1 0.109412510675433 1 0.0521884262561798 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307604 chr1:22307603 synonymous SNV . 0 20 hm5C_associated_SNPs_15915 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 73bp
chr1 22307603 22307603 1 + C T BLCA 22307604 + 22307584 22307624 41 AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTC AGGGCCCCGAGCAGGTGATTCCCATCAACTCTGGGGACCTC < 41bp 1 0.109412510675433 1 0.0521884262561798 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307604 chr1:22307603 synonymous SNV . 0 20 hm5C_associated_SNPs_15915 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 63bp
chr1 22307603 22307603 1 + C T BLCA 22307605 + 22307585 22307625 41 GGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTCT GGGCCCCGAGCAGGTGATTCCCATCAACTCTGGGGACCTCT < 41bp 1 0.0376642371442894 1 0.145845860242844 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307605 chr1:22307603 synonymous SNV . 0 19 hm5C_associated_SNPs_15916 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 73bp
chr1 22307603 22307603 1 + C T BLCA 22307605 + 22307585 22307625 41 GGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTCT GGGCCCCGAGCAGGTGATTCCCATCAACTCTGGGGACCTCT < 41bp 1 0.0376642371442894 1 0.145845860242844 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307605 chr1:22307603 synonymous SNV . 0 19 hm5C_associated_SNPs_15916 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 63bp
chr1 22307603 22307603 1 + C T BLCA 22307606 + 22307586 22307626 41 GGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTCTT GGCCCCGAGCAGGTGATTCCCATCAACTCTGGGGACCTCTT < 41bp 1 0.369945359029408 1 0.7057785987854 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307606 chr1:22307603 synonymous SNV . 0 18 hm5C_associated_SNPs_15917 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 73bp
chr1 22307603 22307603 1 + C T BLCA 22307606 + 22307586 22307626 41 GGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTCTT GGCCCCGAGCAGGTGATTCCCATCAACTCTGGGGACCTCTT < 41bp 1 0.369945359029408 1 0.7057785987854 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307606 chr1:22307603 synonymous SNV . 0 18 hm5C_associated_SNPs_15917 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 63bp
chr1 22307603 22307603 1 + C T BLCA 22307612 + 22307592 22307632 41 GAGCAGGTGATCCCCATCAACTCTGGGGACCTCTTTGTGCA GAGCAGGTGATTCCCATCAACTCTGGGGACCTCTTTGTGCA < 41bp 1 0.509570148122366 1 0.532781362533569 experiment 0.980859703755268 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307612 chr1:22307603 synonymous SNV . 0 12 hm5C_associated_SNPs_15918 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 73bp
chr1 22307603 22307603 1 + C T BLCA 22307612 + 22307592 22307632 41 GAGCAGGTGATCCCCATCAACTCTGGGGACCTCTTTGTGCA GAGCAGGTGATTCCCATCAACTCTGGGGACCTCTTTGTGCA < 41bp 1 0.509570148122366 1 0.532781362533569 experiment 0.980859703755268 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307612 chr1:22307603 synonymous SNV . 0 12 hm5C_associated_SNPs_15918 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 63bp
chr1 22307603 22307603 1 + C T BLCA 22307621 + 22307601 22307641 41 ATCCCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTG ATTCCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTG < 41bp 1 0.0679761972607726 1 0.0296905934810638 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307621 chr1:22307603 synonymous SNV . 0 3 hm5C_associated_SNPs_15919 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 73bp
chr1 22307603 22307603 1 + C T BLCA 22307621 + 22307601 22307641 41 ATCCCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTG ATTCCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTG < 41bp 1 0.0679761972607726 1 0.0296905934810638 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307621 chr1:22307603 synonymous SNV . 0 3 hm5C_associated_SNPs_15919 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 63bp
chr1 22307603 22307603 1 + C T BLCA 22307622 + 22307602 22307642 41 TCCCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTGG TTCCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTGG < 41bp 1 0.104820093838011 1 0.0685433745384216 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307622 chr1:22307603 synonymous SNV . 0 2 hm5C_associated_SNPs_15920 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 73bp
chr1 22307603 22307603 1 + C T BLCA 22307622 + 22307602 22307642 41 TCCCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTGG TTCCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTGG < 41bp 1 0.104820093838011 1 0.0685433745384216 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307622 chr1:22307603 synonymous SNV . 0 2 hm5C_associated_SNPs_15920 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 63bp
chr13 22246302 22246302 1 + G A BLCA 22246318 + 22246298 22246338 41 CAGGGAACCAGGAAAGACCACAGCCGATTTGGTAGGTATAC CAGGAAACCAGGAAAGACCACAGCCGATTTGGTAGGTATAC < 41bp 1 0.340373193538137 1 0.106296002864838 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGF9 ENSG00000102678 CDS Human protein_coding chr13:22246318 chr13:22246302 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_15922 0 0 0 0 1 FGF9 chr13:22246328 5'GT 22246328 Upstream 27bp
chr1 145539074 145539074 1 + C A BLCA 145539084 + 145539064 145539104 41 CTATCACTGTCTCAAGTCATCACTAACAATGTGAGTCTGGT CTATCACTGTATCAAGTCATCACTAACAATGTGAGTCTGGT < 41bp 1 0.101371614004785 1 0.264760971069336 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ITGA10 ENSG00000143127 CDS Human protein_coding chr1:145539084 chr1:145539074 nonsynonymous SNV . 0 11 hm5C_associated_SNPs_15927 0 0 0 0 2 ITGA10 chr1:145538980 3'AG 145538980 Downstream 95bp
chr1 145539074 145539074 1 + C A BLCA 145539084 + 145539064 145539104 41 CTATCACTGTCTCAAGTCATCACTAACAATGTGAGTCTGGT CTATCACTGTATCAAGTCATCACTAACAATGTGAGTCTGGT < 41bp 1 0.101371614004785 1 0.264760971069336 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ITGA10 ENSG00000143127 CDS Human protein_coding chr1:145539084 chr1:145539074 nonsynonymous SNV . 0 11 hm5C_associated_SNPs_15927 0 0 0 0 2 ITGA10 chr1:145539093 5'GT 145539093 Upstream 20bp
chr3 184648312 184648312 1 + G A BLCA 184648321 + 184648301 184648341 41 GACACAGTGCAGAGGAGAAGCAGTCTGTATGGCAGAAAGCA GACACAGTGCAAAGGAGAAGCAGTCTGTATGGCAGAAAGCA < 41bp 1 0.0836918207409064 1 0.233729809522629 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS8 ENSG00000156931 CDS Human protein_coding chr3:184648321 chr3:184648312 nonsynonymous SNV 0.992 1 12 hm5C_associated_SNPs_15928 0 0 1 0 2 VPS8 chr3:184648258 3'AG 184648258 Downstream 55bp
chr3 184648312 184648312 1 + G A BLCA 184648321 + 184648301 184648341 41 GACACAGTGCAGAGGAGAAGCAGTCTGTATGGCAGAAAGCA GACACAGTGCAAAGGAGAAGCAGTCTGTATGGCAGAAAGCA < 41bp 1 0.0836918207409064 1 0.233729809522629 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS8 ENSG00000156931 CDS Human protein_coding chr3:184648321 chr3:184648312 nonsynonymous SNV 0.992 1 12 hm5C_associated_SNPs_15928 0 0 1 0 2 VPS8 chr3:184648356 5'GT 184648356 Upstream 45bp
chr19 33202726 33202726 1 + G T BLCA 33202731 + 33202711 33202751 41 GAAAAAAAGACTGAGGAAATCATGAAGGAAGGCAAGCAGTT GAAAAAAAGACTGAGTAAATCATGAAGGAAGGCAAGCAGTT < 41bp 1 0.57845775848666 1 0.342743158340454 experiment 0.843084483026681 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NUDT19 ENSG00000213965 CDS Human protein_coding chr19:33202731 chr19:33202726 stopgain 0.997 0 16 hm5C_associated_SNPs_15929 0 0 1 0 1 NUDT19 chr19:33202658 3'AG 33202658 Downstream 69bp
chr19 1978449 1978449 1 + C T BLCA 1978465 + 1978445 1978485 41 CGATCAAGTCCCGGGCCCCGCAGCTGCACCTGGAGTACCGG CGATTAAGTCCCGGGCCCCGCAGCTGCACCTGGAGTACCGG < 41bp 1 0.446717182214661 1 0.808002948760986 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1978465 chr19:1978449 synonymous SNV . 0 5 hm5C_associated_SNPs_15930 0 0 1 0 2 CSNK1G2 chr19:1978441 3'AG 1978441 Downstream 9bp
chr19 1978449 1978449 1 + C T BLCA 1978465 + 1978445 1978485 41 CGATCAAGTCCCGGGCCCCGCAGCTGCACCTGGAGTACCGG CGATTAAGTCCCGGGCCCCGCAGCTGCACCTGGAGTACCGG < 41bp 1 0.446717182214661 1 0.808002948760986 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1978465 chr19:1978449 synonymous SNV . 0 5 hm5C_associated_SNPs_15930 0 0 1 0 2 CSNK1G2 chr19:1978510 5'GT 1978510 Upstream 62bp
chr22 26400707 26400707 1 + C A BLCA 26400695 + 26400675 26400715 41 TTATTCTAGGGATAACGTCTCCATCCTCAGCTCCCAGCCAG TTATTCTAGGGATAACGTCTCCATCCTCAGCTACCAGCCAG < 41bp 1 0.0268192262148473 1 0.419796347618103 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26400695 chr22:26400707 nonsynonymous SNV 0.998 3 33 hm5C_associated_SNPs_15931 0 0 0 0 1 MYO18B chr22:26400684 3'AG 26400684 Downstream 24bp
chr9 137987778 137987778 1 + G C BLCA 137987790 + 137987770 137987810 41 TACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTC TACGTGGACAAGATGGAGAACCAAATGAAAGGACTGGAGTC < 41bp 1 0.221389911457639 1 0.277133464813232 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137987790 chr9:137987778 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_15932 0 0 0 0 2 OLFM1 chr9:137987710 3'AG 137987710 Downstream 69bp
chr9 137987778 137987778 1 + G C BLCA 137987790 + 137987770 137987810 41 TACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTC TACGTGGACAAGATGGAGAACCAAATGAAAGGACTGGAGTC < 41bp 1 0.221389911457639 1 0.277133464813232 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137987790 chr9:137987778 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_15932 0 0 0 0 2 OLFM1 chr9:137987865 5'GT 137987865 Upstream 88bp
chr9 137987778 137987778 1 + G C BLCA 137987791 + 137987771 137987811 41 ACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTCC ACGTGGACAAGATGGAGAACCAAATGAAAGGACTGGAGTCC < 41bp 1 0.319487684727674 1 0.611215949058533 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137987791 chr9:137987778 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_15933 0 0 0 0 2 OLFM1 chr9:137987710 3'AG 137987710 Downstream 69bp
chr9 137987778 137987778 1 + G C BLCA 137987791 + 137987771 137987811 41 ACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTCC ACGTGGACAAGATGGAGAACCAAATGAAAGGACTGGAGTCC < 41bp 1 0.319487684727674 1 0.611215949058533 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137987791 chr9:137987778 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_15933 0 0 0 0 2 OLFM1 chr9:137987865 5'GT 137987865 Upstream 88bp
chr2 220097299 220097299 1 + T G BLCA 220097293 + 220097273 220097313 41 GACACTGGATCGGGAGAGGGCTACATTTGAGAAGTTGAGCC GACACTGGATCGGGAGAGGGCTACATGTGAGAAGTTGAGCC < 41bp 1 0.745298194506969 1 0.830225467681885 experiment 0.509403610986062 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220097293 chr2:220097299 nonsynonymous SNV 0.113 0 27 hm5C_associated_SNPs_15934 0 0 1 0 1 ANKZF1 chr2:220097212 3'AG 220097212 Downstream 88bp
chr1 155279692 155279692 1 + G T BLCA 155279674 + 155279654 155279694 41 GGTGGCTGGGTTCCCTACGGCGGCCCTCCCTGGTGCACGGG GGTGGCTGGGTTCCCTACGGCGGCCCTCCCTGGTGCACTGG < 41bp 1 0.645181947022206 1 0.281249552965164 experiment 0.709636105955588 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155279674 chr1:155279692 nonsynonymous SNV 0.615 0 39 hm5C_associated_SNPs_15935 0 0 1 0 1 FDPS chr1:155279756 5'GT 155279756 Upstream 65bp
chr1 155279692 155279692 1 + G T BLCA 155279678 + 155279658 155279698 41 GCTGGGTTCCCTACGGCGGCCCTCCCTGGTGCACGGGTACC GCTGGGTTCCCTACGGCGGCCCTCCCTGGTGCACTGGTACC < 41bp 1 0.0699545833088033 1 0.0718069076538086 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155279678 chr1:155279692 nonsynonymous SNV 0.615 0 35 hm5C_associated_SNPs_15936 0 0 1 0 1 FDPS chr1:155279756 5'GT 155279756 Upstream 65bp
chr1 155279692 155279692 1 + G T BLCA 155279679 + 155279659 155279699 41 CTGGGTTCCCTACGGCGGCCCTCCCTGGTGCACGGGTACCC CTGGGTTCCCTACGGCGGCCCTCCCTGGTGCACTGGTACCC < 41bp 1 0.464608124200329 1 0.855092644691467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155279679 chr1:155279692 nonsynonymous SNV 0.615 0 34 hm5C_associated_SNPs_15937 0 0 1 0 1 FDPS chr1:155279756 5'GT 155279756 Upstream 65bp
chr3 44815901 44815901 1 + G T BLCA 44815917 + 44815897 44815937 41 CAGCGTGACAAATGGTCAGTCTAACCAACCAAGGTAAGGAG CAGCTTGACAAATGGTCAGTCTAACCAACCAAGGTAAGGAG < 41bp 1 0.10493516917926 1 0.195492446422577 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF15 ENSG00000163808 CDS Human protein_coding chr3:44815917 chr3:44815901 nonsynonymous SNV 0.978 1 5 hm5C_associated_SNPs_15938 0 0 1 0 2 KIF15 chr3:44815887 3'AG 44815887 Downstream 15bp
chr3 44815901 44815901 1 + G T BLCA 44815917 + 44815897 44815937 41 CAGCGTGACAAATGGTCAGTCTAACCAACCAAGGTAAGGAG CAGCTTGACAAATGGTCAGTCTAACCAACCAAGGTAAGGAG < 41bp 1 0.10493516917926 1 0.195492446422577 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF15 ENSG00000163808 CDS Human protein_coding chr3:44815917 chr3:44815901 nonsynonymous SNV 0.978 1 5 hm5C_associated_SNPs_15938 0 0 1 0 2 KIF15 chr3:44815929 5'GT 44815929 Upstream 29bp
chr22 26400708 26400708 1 + C A BLCA 26400695 + 26400675 26400715 41 TTATTCTAGGGATAACGTCTCCATCCTCAGCTCCCAGCCAG TTATTCTAGGGATAACGTCTCCATCCTCAGCTCACAGCCAG < 41bp 1 0.0247103783897259 1 0.753066420555115 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26400695 chr22:26400708 synonymous SNV . 0 34 hm5C_associated_SNPs_15939 0 0 0 0 1 MYO18B chr22:26400684 3'AG 26400684 Downstream 25bp
chr22 26242214 26242214 1 + G A BLCA 26242222 + 26242202 26242242 41 TGCCGCGGTGAGGAGGAAAGCCCCGTGCTCCCAGATCAAGC TGCCGCGGTGAGAAGGAAAGCCCCGTGCTCCCAGATCAAGC < 41bp 1 0.240446442735244 1 0.112623482942581 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26242222 chr22:26242214 synonymous SNV . 0 13 hm5C_associated_SNPs_15941 0 0 0 0 1 MYO18B chr22:26242250 5'GT 26242250 Upstream 37bp
chr2 200824491 200824491 1 + G A BLCA 200824505 + 200824485 200824525 41 TGCATTGAAAGAAAAGGTTACTTCACTACCTGACAACCATA TGCATTAAAAGAAAAGGTTACTTCACTACCTGACAACCATA < 41bp 1 0.281912797012943 1 0.114675104618073 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200824505 chr2:200824491 synonymous SNV . 0 7 hm5C_associated_SNPs_15945 0 0 1 0 1 MAIP1 chr2:200824477 3'AG 200824477 Downstream 15bp
chr17 34009793 34009793 1 + C G BLCA 34009813 + 34009793 34009833 41 CTCAATACCTTGGGCCCAGTCATGAAGATGGAACCTCTGAA GTCAATACCTTGGGCCCAGTCATGAAGATGGAACCTCTGAA < 41bp 1 0.695883622717666 1 0.504534065723419 experiment 0.608232754564668 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP2B1 ENSG00000006125 CDS Human protein_coding chr17:34009813 chr17:34009793 nonsynonymous SNV 0.999 1 1 hm5C_associated_SNPs_15946 0 0 1 0 2 AP2B1 chr17:34009714 3'AG 34009714 Downstream 80bp
chr17 34009793 34009793 1 + C G BLCA 34009813 + 34009793 34009833 41 CTCAATACCTTGGGCCCAGTCATGAAGATGGAACCTCTGAA GTCAATACCTTGGGCCCAGTCATGAAGATGGAACCTCTGAA < 41bp 1 0.695883622717666 1 0.504534065723419 experiment 0.608232754564668 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP2B1 ENSG00000006125 CDS Human protein_coding chr17:34009813 chr17:34009793 nonsynonymous SNV 0.999 1 1 hm5C_associated_SNPs_15946 0 0 1 0 2 AP2B1 chr17:34009843 5'GT 34009843 Upstream 51bp
chr1 150280533 150280533 1 + T C BLCA 150280549 + 150280529 150280569 41 ATTATGAGAAGCCATGCCGCCGGCGACAGAGGGAAAGCTAT ATTACGAGAAGCCATGCCGCCGGCGACAGAGGGAAAGCTAT < 41bp 1 0.718642275784226 1 0.788419485092163 experiment 0.562715448431548 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPS21 ENSG00000187145 CDS Human other chr1:150280549 chr1:150280533 synonymous SNV . 0 5 hm5C_associated_SNPs_15947 0 0 1 0 1 MRPS21 chr1:150280482 3'AG 150280482 Downstream 52bp
chr17 7402793 7402793 1 + G A BLCA 7402808 + 7402788 7402828 41 AGAGAGACGTCTTCCTGGAGCGGGTGTGTGGTCCAAATGGA AGAGAAACGTCTTCCTGGAGCGGGTGTGTGGTCCAAATGGA < 41bp 1 0.559011965806268 1 0.732277274131775 experiment 0.881976068387464 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2A ENSG00000181222 CDS Human protein_coding chr17:7402808 chr17:7402793 nonsynonymous SNV 0.991 3 6 hm5C_associated_SNPs_15948 0 0 0 0 1 POLR2A chr17:7402810 5'GT 7402810 Upstream 18bp
chr2 54872396 54872396 1 + A G BLCA 54872378 + 54872358 54872398 41 GCCCTCAGATGCTGGAGAATCAGATGGAAGTGCGGAAGAAG GCCCTCAGATGCTGGAGAATCAGATGGAAGTGCGGAAGGAG < 41bp 1 0.407062062487964 1 0.819797992706299 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872378 chr2:54872396 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_15949 0 0 1 0 1 SPTBN1 chr2:54872366 3'AG 54872366 Downstream 31bp
chr2 54872396 54872396 1 + A G BLCA 54872413 + 54872393 54872433 41 AAGAAGGAGATCGAAGAGCTCCAAAGCCAAGCCCAGGCCCT AAGGAGGAGATCGAAGAGCTCCAAAGCCAAGCCCAGGCCCT < 41bp 1 0.307907944840431 1 0.103343516588211 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872413 chr2:54872396 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_15950 0 0 1 0 1 SPTBN1 chr2:54872366 3'AG 54872366 Downstream 31bp
chr3 52238004 52238004 1 + C T BLCA 52238023 + 52238003 52238043 41 TCTTCTTCAAGATAACTTGCCAAAATGTAAGTCTCATTGTT TTTTCTTCAAGATAACTTGCCAAAATGTAAGTCTCATTGTT < 41bp 1 0.333803421037485 1 0.165312945842743 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52238023 chr3:52238004 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_15951 0 0 1 0 1 ALAS1 chr3:52238028 5'GT 52238028 Upstream 25bp
chr1 22331955 22331955 1 + G C BLCA 22331944 + 22331924 22331964 41 CCTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTG CCTCCTGGGCCACCAGGTTTCCCTGCAGTATCAGAAAAGTG < 41bp 1 0.167738696541591 1 0.096904456615448 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331944 chr1:22331955 nonsynonymous SNV 0.433 1 32 hm5C_associated_SNPs_15952 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 16bp
chr1 22331955 22331955 1 + G C BLCA 22331944 + 22331924 22331964 41 CCTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTG CCTCCTGGGCCACCAGGTTTCCCTGCAGTATCAGAAAAGTG < 41bp 1 0.167738696541591 1 0.096904456615448 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331944 chr1:22331955 nonsynonymous SNV 0.433 1 32 hm5C_associated_SNPs_15952 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 83bp
chr1 22331955 22331955 1 + G C BLCA 22331945 + 22331925 22331965 41 CTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGG CTCCTGGGCCACCAGGTTTCCCTGCAGTATCAGAAAAGTGG < 41bp 1 0.0698034893389784 1 0.0970418751239777 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331945 chr1:22331955 nonsynonymous SNV 0.433 1 31 hm5C_associated_SNPs_15953 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 16bp
chr1 22331955 22331955 1 + G C BLCA 22331945 + 22331925 22331965 41 CTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGG CTCCTGGGCCACCAGGTTTCCCTGCAGTATCAGAAAAGTGG < 41bp 1 0.0698034893389784 1 0.0970418751239777 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331945 chr1:22331955 nonsynonymous SNV 0.433 1 31 hm5C_associated_SNPs_15953 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 83bp
chr1 22331955 22331955 1 + G C BLCA 22331949 + 22331929 22331969 41 TGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGGAAGC TGGGCCACCAGGTTTCCCTGCAGTATCAGAAAAGTGGAAGC < 41bp 1 0.499574094346956 1 0.185654908418655 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331949 chr1:22331955 nonsynonymous SNV 0.433 1 27 hm5C_associated_SNPs_15954 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 16bp
chr1 22331955 22331955 1 + G C BLCA 22331949 + 22331929 22331969 41 TGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGGAAGC TGGGCCACCAGGTTTCCCTGCAGTATCAGAAAAGTGGAAGC < 41bp 1 0.499574094346956 1 0.185654908418655 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331949 chr1:22331955 nonsynonymous SNV 0.433 1 27 hm5C_associated_SNPs_15954 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 83bp
chr1 22331955 22331955 1 + G C BLCA 22331969 + 22331949 22331989 41 CAGTATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGG CAGTATCAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGG < 41bp 1 0.168697461331022 1 0.30516391992569 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331969 chr1:22331955 nonsynonymous SNV 0.433 1 7 hm5C_associated_SNPs_15955 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 16bp
chr1 22331955 22331955 1 + G C BLCA 22331969 + 22331949 22331989 41 CAGTATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGG CAGTATCAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGG < 41bp 1 0.168697461331022 1 0.30516391992569 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331969 chr1:22331955 nonsynonymous SNV 0.433 1 7 hm5C_associated_SNPs_15955 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 83bp
chr1 22331955 22331955 1 + G C BLCA 22331972 + 22331952 22331992 41 TATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAG TATCAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAG < 41bp 1 0.306904459275143 1 0.362398982048035 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331972 chr1:22331955 nonsynonymous SNV 0.433 1 4 hm5C_associated_SNPs_15956 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 16bp
chr1 22331955 22331955 1 + G C BLCA 22331972 + 22331952 22331992 41 TATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAG TATCAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAG < 41bp 1 0.306904459275143 1 0.362398982048035 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331972 chr1:22331955 nonsynonymous SNV 0.433 1 4 hm5C_associated_SNPs_15956 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 83bp
chr1 22331955 22331955 1 + G C BLCA 22331975 + 22331955 22331995 41 GAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCT CAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCT < 41bp 1 0.418495006681757 1 0.0631860792636871 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331975 chr1:22331955 nonsynonymous SNV 0.433 1 1 hm5C_associated_SNPs_15957 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 16bp
chr1 22331955 22331955 1 + G C BLCA 22331975 + 22331955 22331995 41 GAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCT CAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCT < 41bp 1 0.418495006681757 1 0.0631860792636871 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331975 chr1:22331955 nonsynonymous SNV 0.433 1 1 hm5C_associated_SNPs_15957 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 83bp
chr11 118939921 118939921 1 + A G BLCA 118939940 + 118939920 118939960 41 GATCTGGTTCTTGCCACGTTCCTACAGCTTACAGGCTTCCA GGTCTGGTTCTTGCCACGTTCCTACAGCTTACAGGCTTCCA < 41bp 1 0.0772889107245895 1 0.586368083953857 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VPS11 ENSG00000160695 CDS Human protein_coding chr11:118939940 chr11:118939921 nonsynonymous SNV 1.000 0 2 hm5C_associated_SNPs_15958 0 0 1 0 1 VPS11 chr11:118939884 3'AG 118939884 Downstream 38bp
chr19 3151779 3151779 1 + T C BLCA 3151786 + 3151766 3151806 41 CTCCGCAGCCGCATGCCCACCACTGGCATCAACGAGTACTG CTCCGCAGCCGCACGCCCACCACTGGCATCAACGAGTACTG < 41bp 1 0.413497108745861 1 0.0525122880935669 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNA15 ENSG00000060558 CDS Human protein_coding chr19:3151786 chr19:3151779 nonsynonymous SNV 0.998 1 14 hm5C_associated_SNPs_15968 0 0 0 0 2 GNA15 chr19:3151705 3'AG 3151705 Downstream 75bp
chr19 3151779 3151779 1 + T C BLCA 3151786 + 3151766 3151806 41 CTCCGCAGCCGCATGCCCACCACTGGCATCAACGAGTACTG CTCCGCAGCCGCACGCCCACCACTGGCATCAACGAGTACTG < 41bp 1 0.413497108745861 1 0.0525122880935669 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNA15 ENSG00000060558 CDS Human protein_coding chr19:3151786 chr19:3151779 nonsynonymous SNV 0.998 1 14 hm5C_associated_SNPs_15968 0 0 0 0 2 GNA15 chr19:3151833 5'GT 3151833 Upstream 55bp
chr19 14024301 14024301 1 + G A BLCA 14024290 + 14024270 14024310 41 GGACATCCCGCCGCCAGTGGCCATAGGAAAAGGCCCGGCGT GGACATCCCGCCGCCAGTGGCCATAGGAAAAAGCCCGGCGT < 41bp 1 0.253121708882571 1 0.324832141399384 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14024290 chr19:14024301 nonsynonymous SNV 0.001 1 32 hm5C_associated_SNPs_15969 0 0 0 0 1 CC2D1A chr19:14024217 3'AG 14024217 Downstream 85bp
chr2 216197224 216197224 1 + C G BLCA 216197204 + 216197184 216197224 41 TTTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCC TTTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCG < 41bp 1 0.0473232694739299 1 0.112897843122482 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216197204 chr2:216197224 nonsynonymous SNV 0.995 5 41 hm5C_associated_SNPs_15970 0 0 1 0 1 ATIC chr2:216197230 5'GT 216197230 Upstream 7bp
chr2 216197224 216197224 1 + C G BLCA 216197205 + 216197185 216197225 41 TTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCCC TTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCGC < 41bp 1 0.383331904946424 1 0.296723365783691 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216197205 chr2:216197224 nonsynonymous SNV 0.995 5 40 hm5C_associated_SNPs_15971 0 0 1 0 1 ATIC chr2:216197230 5'GT 216197230 Upstream 7bp
chr12 7050593 7050593 1 + C G BLCA 7050585 + 7050565 7050605 41 CCTTTCTGCCCCGATGTCAGCAGCTCATCAGCTGCAGGCCA CCTTTCTGCCCCGATGTCAGCAGCTCATGAGCTGCAGGCCA < 41bp 1 0.376330969448194 1 0.573878288269043 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ATN1 ENSG00000111676 CDS Human protein_coding chr12:7050585 chr12:7050593 nonsynonymous SNV 0.977 2 29 hm5C_associated_SNPs_15972 0 0 1 0 1 ATN1 chr12:7050537 3'AG 7050537 Downstream 57bp
chrX 153695958 153695958 1 + C T BLCA 153695954 + 153695934 153695974 41 ACACTGTGCTGATAGGAGGCCAGCCGTGTTCGCTCACTGTC ACACTGTGCTGATAGGAGGCCAGCTGTGTTCGCTCACTGTC < 41bp 1 0.306335699221205 1 0.335675239562988 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153695954 chrX:153695958 nonsynonymous SNV 0.179 3 25 hm5C_associated_SNPs_15973 0 0 1 0 2 PLXNA3 chrX:153695888 3'AG 153695888 Downstream 71bp
chrX 153695958 153695958 1 + C T BLCA 153695954 + 153695934 153695974 41 ACACTGTGCTGATAGGAGGCCAGCCGTGTTCGCTCACTGTC ACACTGTGCTGATAGGAGGCCAGCTGTGTTCGCTCACTGTC < 41bp 1 0.306335699221205 1 0.335675239562988 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153695954 chrX:153695958 nonsynonymous SNV 0.179 3 25 hm5C_associated_SNPs_15973 0 0 1 0 2 PLXNA3 chrX:153696031 5'GT 153696031 Upstream 74bp
chr1 203834186 203834186 1 + G A BLCA 203834189 + 203834169 203834209 41 GGTTTTGATGAGTATATGAACCTTGTATTAGATGATGCAGA GGTTTTGATGAGTATATAAACCTTGTATTAGATGATGCAGA < 41bp 1 0.0753249002035857 1 0.134621679782867 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SNRPE ENSG00000182004 CDS Human protein_coding chr1:203834189 chr1:203834186 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_15976 0 0 1 2 1 SNRPE chr1:203834247 5'GT 203834247 Upstream 62bp
chr17 16342882 16342882 1 + T C BLCA 16342874 + 16342854 16342894 41 GAAGCGATAACTGACGACGTCTAATGTCTATCTGACCGCAG GAAGCGATAACTGACGACGTCTAATGTCCATCTGACCGCAG < 41bp 1 0.24437084580277 1 0.0549175143241882 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342874 chr17:16342882 . . 0 29 hm5C_associated_SNPs_15977 0 0 1 0 1 LRRC75A-AS1;SNORD49B chr17:16342842 3'AG 16342842 Downstream 41bp
chr17 16342882 16342882 1 + T C BLCA 16342881 + 16342861 16342901 41 TAACTGACGACGTCTAATGTCTATCTGACCGCAGTCGCTGA TAACTGACGACGTCTAATGTCCATCTGACCGCAGTCGCTGA < 41bp 1 0.0577994880390702 1 0.038604199886322 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342881 chr17:16342882 . . 0 22 hm5C_associated_SNPs_15978 0 0 1 0 1 LRRC75A-AS1;SNORD49B chr17:16342842 3'AG 16342842 Downstream 41bp
chr2 216960901 216960901 1 + G A BLCA 216960884 + 216960864 216960904 41 GAGAAAACAGATGAGGAGCCCGGAGAATCAGAAGGTGGAGA GAGAAAACAGATGAGGAGCCCGGAGAATCAGAAGGTGAAGA < 41bp 1 0.546844460150033 1 0.75552773475647 experiment 0.906311079699935 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM169 ENSG00000163449 CDS Human protein_coding chr2:216960884 chr2:216960901 nonsynonymous SNV 0.998 1 38 hm5C_associated_SNPs_15979 0 0 0 0 1 TMEM169 chr2:216960957 5'GT 216960957 Upstream 57bp
chr12 109537036 109537036 1 + T C BLCA 109537024 + 109537004 109537044 41 TTGTTGCAGAAGAAAGAAAGCATTACACTGTTTATCCACCC TTGTTGCAGAAGAAAGAAAGCATTACACTGTTCATCCACCC < 41bp 1 0.215697294990937 1 0.0830960273742676 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109537024 chr12:109537036 nonsynonymous SNV 0.926 4 33 hm5C_associated_SNPs_15980 0 0 1 0 2 UNG chr12:109536994 3'AG 109536994 Downstream 43bp
chr12 109537036 109537036 1 + T C BLCA 109537024 + 109537004 109537044 41 TTGTTGCAGAAGAAAGAAAGCATTACACTGTTTATCCACCC TTGTTGCAGAAGAAAGAAAGCATTACACTGTTCATCCACCC < 41bp 1 0.215697294990937 1 0.0830960273742676 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109537024 chr12:109537036 nonsynonymous SNV 0.926 4 33 hm5C_associated_SNPs_15980 0 0 1 0 2 UNG chr12:109537089 5'GT 109537089 Upstream 54bp
chr5 34929961 34929961 1 + G A BLCA 34929944 + 34929924 34929964 41 GATGAAGTGTCACTATGAGGCGCTGGGGGTGCGGCGCGACG GATGAAGTGTCACTATGAGGCGCTGGGGGTGCGGCGCAACG < 41bp 1 0.740522258688194 1 0.389523595571518 experiment 0.518955482623612 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34929944 chr5:34929961 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_15982 0 0 1 0 1 DNAJC21 chr5:34930021 5'GT 34930021 Upstream 61bp
chr5 34929961 34929961 1 + G A BLCA 34929960 + 34929940 34929980 41 GAGGCGCTGGGGGTGCGGCGCGACGCCAGCGAGGAGGAGCT GAGGCGCTGGGGGTGCGGCGCAACGCCAGCGAGGAGGAGCT < 41bp 1 0.654813685891862 1 0.148938298225403 experiment 0.690372628216276 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34929960 chr5:34929961 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_15983 0 0 1 0 1 DNAJC21 chr5:34930021 5'GT 34930021 Upstream 61bp
chr5 34929961 34929961 1 + G A BLCA 34929965 + 34929945 34929985 41 GCTGGGGGTGCGGCGCGACGCCAGCGAGGAGGAGCTCAAGA GCTGGGGGTGCGGCGCAACGCCAGCGAGGAGGAGCTCAAGA < 41bp 1 0.703298377283568 1 0.3235242664814 experiment 0.593403245432863 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34929965 chr5:34929961 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_15984 0 0 1 0 1 DNAJC21 chr5:34930021 5'GT 34930021 Upstream 61bp
chr22 22040818 22040818 1 + C T BLCA 22040825 + 22040805 22040845 41 TTCACCTCCACCGCGATGGTCCCGGAGACCACACATGAAGC TTCACCTCCACCGTGATGGTCCCGGAGACCACACATGAAGC < 41bp 1 0.295712677497006 1 0.251104086637497 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040825 chr22:22040818 nonsynonymous SNV 0.013 1 14 hm5C_associated_SNPs_15985 0 0 1 0 2 PPIL2 chr22:22040772 3'AG 22040772 Downstream 47bp
chr22 22040818 22040818 1 + C T BLCA 22040825 + 22040805 22040845 41 TTCACCTCCACCGCGATGGTCCCGGAGACCACACATGAAGC TTCACCTCCACCGTGATGGTCCCGGAGACCACACATGAAGC < 41bp 1 0.295712677497006 1 0.251104086637497 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040825 chr22:22040818 nonsynonymous SNV 0.013 1 14 hm5C_associated_SNPs_15985 0 0 1 0 2 PPIL2 chr22:22040847 5'GT 22040847 Upstream 30bp
chr8 104438289 104438289 1 + T G BLCA 104438295 + 104438275 104438315 41 TATTTCTAGGTTGGTGATGACAAAACTGTGAAGCAGTGGAA TATTTCTAGGTTGGGGATGACAAAACTGTGAAGCAGTGGAA < 41bp 1 0.63470546621098 1 0.579000771045685 experiment 0.730589067578041 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438295 chr8:104438289 synonymous SNV 0.997 0 15 hm5C_associated_SNPs_15986 0 0 1 0 2 DCAF13 chr8:104438284 3'AG 104438284 Downstream 6bp
chr8 104438289 104438289 1 + T G BLCA 104438295 + 104438275 104438315 41 TATTTCTAGGTTGGTGATGACAAAACTGTGAAGCAGTGGAA TATTTCTAGGTTGGGGATGACAAAACTGTGAAGCAGTGGAA < 41bp 1 0.63470546621098 1 0.579000771045685 experiment 0.730589067578041 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438295 chr8:104438289 synonymous SNV 0.997 0 15 hm5C_associated_SNPs_15986 0 0 1 0 2 DCAF13 chr8:104438373 5'GT 104438373 Upstream 85bp
chr8 104438289 104438289 1 + T G BLCA 104438308 + 104438288 104438328 41 GTGATGACAAAACTGTGAAGCAGTGGAAAATGGATGGGCCA GGGATGACAAAACTGTGAAGCAGTGGAAAATGGATGGGCCA < 41bp 1 0.430495670361347 1 0.775513470172882 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438308 chr8:104438289 synonymous SNV 0.997 0 2 hm5C_associated_SNPs_15987 0 0 1 0 2 DCAF13 chr8:104438284 3'AG 104438284 Downstream 6bp
chr8 104438289 104438289 1 + T G BLCA 104438308 + 104438288 104438328 41 GTGATGACAAAACTGTGAAGCAGTGGAAAATGGATGGGCCA GGGATGACAAAACTGTGAAGCAGTGGAAAATGGATGGGCCA < 41bp 1 0.430495670361347 1 0.775513470172882 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438308 chr8:104438289 synonymous SNV 0.997 0 2 hm5C_associated_SNPs_15987 0 0 1 0 2 DCAF13 chr8:104438373 5'GT 104438373 Upstream 85bp
chr14 21967264 21967264 1 - A C BLCA 21967278 - 21967258 21967298 41 TAGTTTTTATTTCCTAGGTTCGTTCCACCAGTCATAAACCA TAGTTTTTATTTCCTAGGTTCGTTCCACCAGTCAGAAACCA < 41bp 1 0.0198871354407865 1 0.0497432947158813 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control METTL3 ENSG00000165819 CDS Human protein_coding chr14:21967278 chr14:21967264 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_15988 0 0 1 0 2 METTL3 chr14:21967169 5'GT 21967169 Upstream 96bp
chr14 21967264 21967264 1 - A C BLCA 21967278 - 21967258 21967298 41 TAGTTTTTATTTCCTAGGTTCGTTCCACCAGTCATAAACCA TAGTTTTTATTTCCTAGGTTCGTTCCACCAGTCAGAAACCA < 41bp 1 0.0198871354407865 1 0.0497432947158813 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control METTL3 ENSG00000165819 CDS Human protein_coding chr14:21967278 chr14:21967264 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_15988 0 0 1 0 2 METTL3 chr14:21967281 3'AG 21967281 Downstream 18bp
chr11 110035165 110035165 1 + G C BLCA 110035177 + 110035157 110035197 41 CATGTCTAGAAATACGGCAGCCAAAACTGCAAACGAAGGAG CATGTCTACAAATACGGCAGCCAAAACTGCAAACGAAGGAG < 41bp 1 0.159467700581272 1 0.247871428728104 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZC3H12C ENSG00000149289 CDS Human protein_coding chr11:110035177 chr11:110035165 nonsynonymous SNV 0.795 2 9 hm5C_associated_SNPs_15989 0 0 0 0 1 ZC3H12C chr11:110035066 3'AG 110035066 Downstream 100bp
chr11 110035165 110035165 1 + G C BLCA 110035178 + 110035158 110035198 41 ATGTCTAGAAATACGGCAGCCAAAACTGCAAACGAAGGAGG ATGTCTACAAATACGGCAGCCAAAACTGCAAACGAAGGAGG < 41bp 1 0.389638431046548 1 0.460243493318558 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZC3H12C ENSG00000149289 CDS Human protein_coding chr11:110035178 chr11:110035165 nonsynonymous SNV 0.795 2 8 hm5C_associated_SNPs_15990 0 0 0 0 1 ZC3H12C chr11:110035066 3'AG 110035066 Downstream 100bp
chr16 85691140 85691140 1 + G C BLCA 85691160 + 85691140 85691180 41 GAGCAGCACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGA CAGCAGCACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGA < 41bp 1 0.334160139188074 1 0.572038412094116 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691160 chr16:85691140 nonsynonymous SNV 0.998 4 1 hm5C_associated_SNPs_15991 0 0 1 0 1 GSE1 chr16:85691210 5'GT 85691210 Upstream 71bp
chr1 180034342 180034342 1 + C T BLCA 180034360 + 180034340 180034380 41 ATCTCCAGCAGTGAAACTAGCAGCATTATGCAGAAACTGAA ATTTCCAGCAGTGAAACTAGCAGCATTATGCAGAAACTGAA < 41bp 1 0.596979032538506 1 0.135182976722717 experiment 0.806041934922988 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180034360 chr1:180034342 synonymous SNV . 0 3 hm5C_associated_SNPs_15992 0 0 1 0 2 CEP350 chr1:180034250 3'AG 180034250 Downstream 93bp
chr1 180034342 180034342 1 + C T BLCA 180034360 + 180034340 180034380 41 ATCTCCAGCAGTGAAACTAGCAGCATTATGCAGAAACTGAA ATTTCCAGCAGTGAAACTAGCAGCATTATGCAGAAACTGAA < 41bp 1 0.596979032538506 1 0.135182976722717 experiment 0.806041934922988 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180034360 chr1:180034342 synonymous SNV . 0 3 hm5C_associated_SNPs_15992 0 0 1 0 2 CEP350 chr1:180034407 5'GT 180034407 Upstream 66bp
chr15 25213157 25213157 1 + C T BLCA 25213171 + 25213151 25213191 41 GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA GGCATTTTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA < 41bp 1 0.784486266522856 1 0.551867246627808 experiment 0.431027466954287 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNURF ENSG00000214265;ENSG00000273173 CDS Human other chr15:25213171 chr15:25213157 synonymous SNV . 0 7 hm5C_associated_SNPs_15993 0 0 0 0 2 SNURF chr15:25213079 3'AG 25213079 Downstream 79bp
chr15 25213157 25213157 1 + C T BLCA 25213171 + 25213151 25213191 41 GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA GGCATTTTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA < 41bp 1 0.784486266522856 1 0.551867246627808 experiment 0.431027466954287 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNURF ENSG00000214265;ENSG00000273173 CDS Human other chr15:25213171 chr15:25213157 synonymous SNV . 0 7 hm5C_associated_SNPs_15993 0 0 0 0 2 SNHG14 chr15:25213229 5'GT 25213229 Upstream 73bp
chr19 54942066 54942066 1 + C T BLCA 54942079 + 54942059 54942099 41 TGTGCCTCAGTTCCCTTCAGCGCAGGTCGGTGGGTGGGCGC TGTGCCTTAGTTCCCTTCAGCGCAGGTCGGTGGGTGGGCGC < 41bp 1 0.73520960693565 1 0.47599983215332 experiment 0.529580786128701 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54942079 chr19:54942066 stopgain 0.351 1 8 hm5C_associated_SNPs_15994 0 0 0 0 2 TTYH1 chr19:54941991 3'AG 54941991 Downstream 76bp
chr19 54942066 54942066 1 + C T BLCA 54942079 + 54942059 54942099 41 TGTGCCTCAGTTCCCTTCAGCGCAGGTCGGTGGGTGGGCGC TGTGCCTTAGTTCCCTTCAGCGCAGGTCGGTGGGTGGGCGC < 41bp 1 0.73520960693565 1 0.47599983215332 experiment 0.529580786128701 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54942079 chr19:54942066 stopgain 0.351 1 8 hm5C_associated_SNPs_15994 0 0 0 0 2 TTYH1 chr19:54942083 5'GT 54942083 Upstream 18bp
chr17 43182991 43182991 1 + G C BLCA 43183002 + 43182982 43183022 41 CCTAGGTTGGACTGGTGCTACAATAACCAGTCACCAGTGCG CCTAGGTTGCACTGGTGCTACAATAACCAGTCACCAGTGCG < 41bp 1 0.356837304436895 1 0.151230722665787 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NMT1 ENSG00000136448 CDS Human protein_coding chr17:43183002 chr17:43182991 nonsynonymous SNV 0.999 1 10 hm5C_associated_SNPs_15998 0 0 1 0 1 NMT1 chr17:43182987 3'AG 43182987 Downstream 5bp
chr17 28754486 28754486 1 + C T BLCA 28754477 + 28754457 28754497 41 TGAACCGAAATTTCCCAGACCAGTTTGTTCAGATCACAGAT TGAACCGAAATTTCCCAGACCAGTTTGTTTAGATCACAGAT < 41bp 1 0.0900196529081394 1 0.101308673620224 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28754477 chr17:28754486 stopgain 0.983 0 30 hm5C_associated_SNPs_15999 0 0 0 0 2 CPD chr17:28754409 3'AG 28754409 Downstream 78bp
chr17 28754486 28754486 1 + C T BLCA 28754477 + 28754457 28754497 41 TGAACCGAAATTTCCCAGACCAGTTTGTTCAGATCACAGAT TGAACCGAAATTTCCCAGACCAGTTTGTTTAGATCACAGAT < 41bp 1 0.0900196529081394 1 0.101308673620224 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28754477 chr17:28754486 stopgain 0.983 0 30 hm5C_associated_SNPs_15999 0 0 0 0 2 CPD chr17:28754576 5'GT 28754576 Upstream 91bp
chr6 144109920 144109920 1 + G C BLCA 144109932 + 144109912 144109952 41 CAGCCTGAGACCCACAGTGGCAGAGCTACAAGCTCGAAGGA CAGCCTGACACCCACAGTGGCAGAGCTACAAGCTCGAAGGA < 41bp 1 0.373373320319635 1 0.363463044166565 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHACTR2 ENSG00000112419 CDS Human protein_coding chr6:144109932 chr6:144109920 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_16000 0 0 1 0 1 PHACTR2 chr6:144109910 3'AG 144109910 Downstream 11bp
chr2 3627712 3627712 1 + A T BLCA 3627693 + 3627673 3627713 41 TGCTTACCTTTTAAACTATTCTTTTAGCCGTACTCTGACAG TGCTTACCTTTTAAACTATTCTTTTAGCCGTACTCTGACTG < 41bp 1 0.0795402095358293 1 0.023492157459259 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS7 ENSG00000171863 CDS Human protein_coding chr2:3627693 chr2:3627712 synonymous SNV . 0 40 hm5C_associated_SNPs_16001 0 0 1 0 1 RPS7 chr2:3627700 3'AG 3627700 Downstream 13bp
chr20 21362667 21362667 1 + C T BLCA 21362679 + 21362659 21362699 41 GTCCTCCTCCCCTTTTCCAGCAGCAAAGGTTTGACAGGTAA GTCCTCCTTCCCTTTTCCAGCAGCAAAGGTTTGACAGGTAA < 41bp 1 0.603529956870583 1 0.438811033964157 experiment 0.792940086258834 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XRN2 ENSG00000088930 CDS Human protein_coding chr20:21362679 chr20:21362667 nonsynonymous SNV 0.994 4 9 hm5C_associated_SNPs_16002 0 0 1 0 2 XRN2 chr20:21362632 3'AG 21362632 Downstream 36bp
chr20 21362667 21362667 1 + C T BLCA 21362679 + 21362659 21362699 41 GTCCTCCTCCCCTTTTCCAGCAGCAAAGGTTTGACAGGTAA GTCCTCCTTCCCTTTTCCAGCAGCAAAGGTTTGACAGGTAA < 41bp 1 0.603529956870583 1 0.438811033964157 experiment 0.792940086258834 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XRN2 ENSG00000088930 CDS Human protein_coding chr20:21362679 chr20:21362667 nonsynonymous SNV 0.994 4 9 hm5C_associated_SNPs_16002 0 0 1 0 2 XRN2 chr20:21362695 5'GT 21362695 Upstream 29bp
chr7 135272739 135272739 1 + A G BLCA 135272723 + 135272703 135272743 41 ATCTAGGGGTGGCTCATCAGCGGCCCCCTCAACGCCAGGTG ATCTAGGGGTGGCTCATCAGCGGCCCCCTCAACGCCGGGTG < 41bp 1 0.499263357210934 1 0.500184297561646 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135272723 chr7:135272739 nonsynonymous SNV 0.997 2 37 hm5C_associated_SNPs_16003 0 0 1 0 1 NUP205 chr7:135272740 5'GT 135272740 Upstream 2bp
chr6 26091209 26091209 1 + C A BLCA 26091207 + 26091187 26091227 41 TCGCCGTGTGGAGCCCCGAACTCCATGGGTTTCCAGTAGAA TCGCCGTGTGGAGCCCCGAACTACATGGGTTTCCAGTAGAA < 41bp 1 0.729171992853435 1 0.686567425727844 experiment 0.541656014293131 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26091207 chr6:26091209 nonsynonymous SNV 0.009 1 23 hm5C_associated_SNPs_16004 0 0 0 0 1 HFE chr6:26091138 3'AG 26091138 Downstream 72bp
chr10 128817063 128817063 1 + G A BLCA 128817082 + 128817062 128817102 41 GGCTCGAAAAACAGGGTTTCCGGAGATAATCATGCCTGGTA GACTCGAAAAACAGGGTTTCCGGAGATAATCATGCCTGGTA < 41bp 1 0.484740252827364 1 0.893370032310486 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:128817082 chr10:128817063 nonsynonymous SNV 0.898 3 2 hm5C_associated_SNPs_16007 0 0 1 0 2 DOCK1 chr10:128816974 3'AG 128816974 Downstream 90bp
chr10 128817063 128817063 1 + G A BLCA 128817082 + 128817062 128817102 41 GGCTCGAAAAACAGGGTTTCCGGAGATAATCATGCCTGGTA GACTCGAAAAACAGGGTTTCCGGAGATAATCATGCCTGGTA < 41bp 1 0.484740252827364 1 0.893370032310486 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:128817082 chr10:128817063 nonsynonymous SNV 0.898 3 2 hm5C_associated_SNPs_16007 0 0 1 0 2 DOCK1 chr10:128817099 5'GT 128817099 Upstream 37bp
chr12 72274297 72274297 1 + C G BLCA 72274307 + 72274287 72274327 41 AGAAAGAGGTCATCGAGGATCAGAACATCTGAACAGTTACG AGAAAGAGGTGATCGAGGATCAGAACATCTGAACAGTTACG < 41bp 1 0.726057982155377 1 0.639172673225403 experiment 0.547884035689246 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72274307 chr12:72274297 nonsynonymous SNV 0.462 0 11 hm5C_associated_SNPs_16008 0 0 1 0 2 TBC1D15 chr12:72274249 3'AG 72274249 Downstream 49bp
chr12 72274297 72274297 1 + C G BLCA 72274307 + 72274287 72274327 41 AGAAAGAGGTCATCGAGGATCAGAACATCTGAACAGTTACG AGAAAGAGGTGATCGAGGATCAGAACATCTGAACAGTTACG < 41bp 1 0.726057982155377 1 0.639172673225403 experiment 0.547884035689246 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72274307 chr12:72274297 nonsynonymous SNV 0.462 0 11 hm5C_associated_SNPs_16008 0 0 1 0 2 TBC1D15 chr12:72274387 5'GT 72274387 Upstream 91bp
chr11 14865508 14865508 1 + C T BLCA 14865490 + 14865470 14865510 41 TCCTGCATTAGAATTGATGGCTCTATACGTGGCAGCTGCCA TCCTGCATTAGAATTGATGGCTCTATACGTGGCAGCTGTCA < 41bp 1 0.399431290755441 1 0.802390217781067 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE3B ENSG00000152270 CDS Human protein_coding chr11:14865490 chr11:14865508 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_16011 0 0 1 0 1 PDE3B chr11:14865572 5'GT 14865572 Upstream 65bp
chr11 20139724 20139724 1 + C T BLCA 20139725 + 20139705 20139745 41 GGCAGCCAACTACTCCAGCCCCCAGAGCTATGACAGCGACT GGCAGCCAACTACTCCAGCTCCCAGAGCTATGACAGCGACT < 41bp 1 0.0794162541179236 1 0.356244325637817 experiment 1 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:20139725 chr11:20139724 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_16012 0 0 1 0 1 NAV2 chr11:20139679 3'AG 20139679 Downstream 46bp
chr1 12317073 12317073 1 + C G BLCA 12317053 + 12317033 12317073 41 CTAATACAAAGCTGCAATACCGGCAAATCATGGAATTCCTC CTAATACAAAGCTGCAATACCGGCAAATCATGGAATTCCTG < 41bp 1 0.246432570094151 1 0.388894021511078 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VPS13D ENSG00000048707 CDS Human protein_coding chr1:12317053 chr1:12317073 synonymous SNV . 0 41 hm5C_associated_SNPs_16013 0 0 1 0 2 VPS13D chr1:12317044 3'AG 12317044 Downstream 30bp
chr1 12317073 12317073 1 + C G BLCA 12317053 + 12317033 12317073 41 CTAATACAAAGCTGCAATACCGGCAAATCATGGAATTCCTC CTAATACAAAGCTGCAATACCGGCAAATCATGGAATTCCTG < 41bp 1 0.246432570094151 1 0.388894021511078 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VPS13D ENSG00000048707 CDS Human protein_coding chr1:12317053 chr1:12317073 synonymous SNV . 0 41 hm5C_associated_SNPs_16013 0 0 1 0 2 VPS13D chr1:12317144 5'GT 12317144 Upstream 72bp
chr1 17272853 17272853 1 + G A BLCA 17272843 + 17272823 17272863 41 GACTCCCTGTCCAAGCTGAGCGCCCTCAACGAGAGCCTTGC GACTCCCTGTCCAAGCTGAGCGCCCTCAACAAGAGCCTTGC < 41bp 1 0.16052021329557 1 0.058063268661499 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CROCC ENSG00000058453 CDS Human protein_coding chr1:17272843 chr1:17272853 nonsynonymous SNV 0.943 3 31 hm5C_associated_SNPs_16014 0 0 0 0 2 CROCC chr1:17272754 3'AG 17272754 Downstream 100bp
chr1 17272853 17272853 1 + G A BLCA 17272843 + 17272823 17272863 41 GACTCCCTGTCCAAGCTGAGCGCCCTCAACGAGAGCCTTGC GACTCCCTGTCCAAGCTGAGCGCCCTCAACAAGAGCCTTGC < 41bp 1 0.16052021329557 1 0.058063268661499 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CROCC ENSG00000058453 CDS Human protein_coding chr1:17272843 chr1:17272853 nonsynonymous SNV 0.943 3 31 hm5C_associated_SNPs_16014 0 0 0 0 2 CROCC chr1:17272900 5'GT 17272900 Upstream 48bp
chr11 67378016 67378016 1 + G A BLCA 67378025 + 67378005 67378045 41 AAGCCCCGCCTGAAGCCCCCCTTCCCCGCAGACGTGGGTAA AAGCCCCGCCTAAAGCCCCCCTTCCCCGCAGACGTGGGTAA < 41bp 1 0.0933790167835557 1 0.317881375551224 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67378025 chr11:67378016 synonymous SNV . 0 12 hm5C_associated_SNPs_16019 0 0 1 0 1 NDUFV1 chr11:67378041 5'GT 67378041 Upstream 26bp
chr22 41742178 41742178 1 + A G BLCA 41742194 + 41742174 41742214 41 CTGAAGGAGCACCAGGGCATCTTCACCTTCCTCTGCGAGGT CTGAGGGAGCACCAGGGCATCTTCACCTTCCTCTGCGAGGT < 41bp 1 0.351223403719557 1 0.110107630491257 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41742194 chr22:41742178 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_16020 0 0 1 0 1 ZC3H7B chr22:41742212 5'GT 41742212 Upstream 35bp
chr10 105174887 105174887 1 + C G BLCA 105174899 + 105174879 105174919 41 TACCACATCGGGGATGAGGTCAAGTGCCGGGTGAGCCTCCT TACCACATGGGGGATGAGGTCAAGTGCCGGGTGAGCCTCCT < 41bp 1 0.551015556773272 1 0.711806654930115 experiment 0.897968886453455 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105174899 chr10:105174887 nonsynonymous SNV 0.010 0 9 hm5C_associated_SNPs_16021 0 0 1 0 1 PDCD11 chr10:105174908 5'GT 105174908 Upstream 22bp
chr7 33014899 33014899 1 + G T BLCA 33014888 + 33014868 33014908 41 GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCG GTTCAGATTCACACCTATTTCAAGCCCCCGATTTGCCCTCG < 41bp 1 0.551942427099499 1 0.760094523429871 experiment 0.896115145801001 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014888 chr7:33014899 nonsynonymous SNV 0.939 0 32 hm5C_associated_SNPs_16024 0 0 0 0 1 FKBP9 chr7:33014983 5'GT 33014983 Upstream 85bp
chr7 33014899 33014899 1 + G T BLCA 33014892 + 33014872 33014912 41 AGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCGGACC AGATTCACACCTATTTCAAGCCCCCGATTTGCCCTCGGACC < 41bp 1 0.0749058082341022 1 0.105390161275864 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014892 chr7:33014899 nonsynonymous SNV 0.939 0 28 hm5C_associated_SNPs_16025 0 0 0 0 1 FKBP9 chr7:33014983 5'GT 33014983 Upstream 85bp
chr4 115589295 115589295 1 + A G BLCA 115589284 + 115589264 115589304 41 CTGAGCCATGGTGGTTTGAACAGTATTTTTGAAACTATATA CTGAGCCATGGTGGTTTGAACAGTATTTTTGGAACTATATA < 41bp 1 0.468987812464317 1 0.092190146446228 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UGT8 ENSG00000174607 CDS Human protein_coding chr4:115589284 chr4:115589295 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_16026 0 0 0 0 1 UGT8 chr4:115589241 3'AG 115589241 Downstream 55bp
chr11 126279195 126279195 1 + C T BLCA 126279193 + 126279173 126279213 41 GTTTCTGGAAACAGCCTCCCCTCATCTGGGATGTCAATCCT GTTTCTGGAAACAGCCTCCCCTTATCTGGGATGTCAATCCT < 41bp 1 0.148791243076098 1 0.0457126498222351 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ST3GAL4 ENSG00000110080 CDS Human protein_coding chr11:126279193 chr11:126279195 synonymous SNV . 0 23 hm5C_associated_SNPs_16027 0 0 1 0 1 ST3GAL4 chr11:126279163 3'AG 126279163 Downstream 33bp
chr22 21965299 21965299 1 + G T BLCA 21965319 + 21965299 21965339 41 GAAAACTGGAAGCCAGCAACCAAAACCGACCAAGGTAAGAC TAAAACTGGAAGCCAGCAACCAAAACCGACCAAGGTAAGAC < 41bp 1 0.605857707831504 1 0.782130002975464 experiment 0.788284584336993 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE2L3 ENSG00000185651 CDS Human protein_coding chr22:21965319 chr22:21965299 stopgain 1.000 1 1 hm5C_associated_SNPs_16028 0 0 1 1 1 UBE2L3 chr22:21965332 5'GT 21965332 Upstream 34bp
chr15 59348035 59348035 1 + G A BLCA 59348026 + 59348006 59348046 41 ATGCAGCAGAAGTTGTGGACCTTACCGTTGATGAAGATGGT ATGCAGCAGAAGTTGTGGACCTTACCGTTAATGAAGATGGT < 41bp 1 0.0372481975947937 1 0.0797645151615143 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF111 ENSG00000157450 CDS Human protein_coding chr15:59348026 chr15:59348035 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_16029 0 0 0 0 1 RNF111 chr15:59348044 5'GT 59348044 Upstream 10bp
chr8 145537210 145537210 1 + G A BLCA 145537206 + 145537186 145537226 41 TCCCGGGCCAGGAATGAGCTCAGTGACCACTTGGATGCTAT TCCCGGGCCAGGAATGAGCTCAGTAACCACTTGGATGCTAT < 41bp 1 0.40886730297301 1 0.202686965465546 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HSF1 ENSG00000185122 CDS Human protein_coding chr8:145537206 chr8:145537210 nonsynonymous SNV 0.891 1 25 hm5C_associated_SNPs_16030 0 0 1 0 2 HSF1 chr8:145537197 3'AG 145537197 Downstream 14bp
chr8 145537210 145537210 1 + G A BLCA 145537206 + 145537186 145537226 41 TCCCGGGCCAGGAATGAGCTCAGTGACCACTTGGATGCTAT TCCCGGGCCAGGAATGAGCTCAGTAACCACTTGGATGCTAT < 41bp 1 0.40886730297301 1 0.202686965465546 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HSF1 ENSG00000185122 CDS Human protein_coding chr8:145537206 chr8:145537210 nonsynonymous SNV 0.891 1 25 hm5C_associated_SNPs_16030 0 0 1 0 2 HSF1 chr8:145537302 5'GT 145537302 Upstream 93bp
chr16 845787 845787 1 + G C BLCA 845778 + 845758 845798 41 GCCGGGCCACGCCCCAGGCCCTGCTCCTCGATGCCCTCTGC GCCGGGCCACGCCCCAGGCCCTGCTCCTCCATGCCCTCTGC < 41bp 1 0.427126962304844 1 0.0406796932220459 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845778 chr16:845787 nonsynonymous SNV 0.006 4 30 hm5C_associated_SNPs_16032 0 0 1 0 1 CHTF18 chr16:845834 5'GT 845834 Upstream 48bp
chr12 51449971 51449971 1 + G C BLCA 51449969 + 51449949 51449989 41 CAATACATGATATCTTGGCTCTGAGAGAGTGTTTCTCTAAC CAATACATGATATCTTGGCTCTCAGAGAGTGTTTCTCTAAC < 41bp 1 0.553815754433118 1 0.195650696754456 experiment 0.892368491133764 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51449969 chr12:51449971 synonymous SNV . 0 23 hm5C_associated_SNPs_16033 0 0 1 0 2 LETMD1 chr12:51449927 3'AG 51449927 Downstream 45bp
chr12 51449971 51449971 1 + G C BLCA 51449969 + 51449949 51449989 41 CAATACATGATATCTTGGCTCTGAGAGAGTGTTTCTCTAAC CAATACATGATATCTTGGCTCTCAGAGAGTGTTTCTCTAAC < 41bp 1 0.553815754433118 1 0.195650696754456 experiment 0.892368491133764 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51449969 chr12:51449971 synonymous SNV . 0 23 hm5C_associated_SNPs_16033 0 0 1 0 2 LETMD1 chr12:51450028 5'GT 51450028 Upstream 58bp
chr8 21844747 21844747 1 + G A BLCA 21844767 + 21844747 21844787 41 GTAAGATCTACATTGGGGACCAAGTGCAGAAATCCTCTAAG ATAAGATCTACATTGGGGACCAAGTGCAGAAATCCTCTAAG < 41bp 1 0.327786803990291 1 0.46998855471611 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21844767 chr8:21844747 nonsynonymous SNV 0.999 3 1 hm5C_associated_SNPs_16034 0 0 1 0 1 XPO7 chr8:21844787 5'GT 21844787 Upstream 41bp
chr15 48626677 48626677 1 + G A BLCA 48626680 + 48626660 48626700 41 ACGGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAG ACGGACATTCAGATAGCACTCCCTTCTGGGTGTTATGGAAG < 41bp 1 0.15373374602321 1 0.0906699895858765 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DUT ENSG00000128951 CDS Human protein_coding chr15:48626680 chr15:48626677 synonymous SNV . 0 18 hm5C_associated_SNPs_16035 0 0 1 0 2 DUT chr15:48626614 3'AG 48626614 Downstream 64bp
chr15 48626677 48626677 1 + G A BLCA 48626680 + 48626660 48626700 41 ACGGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAG ACGGACATTCAGATAGCACTCCCTTCTGGGTGTTATGGAAG < 41bp 1 0.15373374602321 1 0.0906699895858765 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DUT ENSG00000128951 CDS Human protein_coding chr15:48626680 chr15:48626677 synonymous SNV . 0 18 hm5C_associated_SNPs_16035 0 0 1 0 2 DUT chr15:48626705 5'GT 48626705 Upstream 29bp
chr15 48626677 48626677 1 + G A BLCA 48626682 + 48626662 48626702 41 GGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAG GGACATTCAGATAGCACTCCCTTCTGGGTGTTATGGAAGAG < 41bp 1 0.205977749613946 1 0.111676067113876 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DUT ENSG00000128951 CDS Human protein_coding chr15:48626682 chr15:48626677 synonymous SNV . 0 16 hm5C_associated_SNPs_16036 0 0 1 0 2 DUT chr15:48626614 3'AG 48626614 Downstream 64bp
chr15 48626677 48626677 1 + G A BLCA 48626682 + 48626662 48626702 41 GGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAG GGACATTCAGATAGCACTCCCTTCTGGGTGTTATGGAAGAG < 41bp 1 0.205977749613946 1 0.111676067113876 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DUT ENSG00000128951 CDS Human protein_coding chr15:48626682 chr15:48626677 synonymous SNV . 0 16 hm5C_associated_SNPs_16036 0 0 1 0 2 DUT chr15:48626705 5'GT 48626705 Upstream 29bp
chr15 48626677 48626677 1 + G A BLCA 48626685 + 48626665 48626705 41 CATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAGTGG CATTCAGATAGCACTCCCTTCTGGGTGTTATGGAAGAGTGG < 41bp 1 0.673305016286378 1 0.74135810136795 experiment 0.653389967427245 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DUT ENSG00000128951 CDS Human protein_coding chr15:48626685 chr15:48626677 synonymous SNV . 0 13 hm5C_associated_SNPs_16037 0 0 1 0 2 DUT chr15:48626614 3'AG 48626614 Downstream 64bp
chr15 48626677 48626677 1 + G A BLCA 48626685 + 48626665 48626705 41 CATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAGTGG CATTCAGATAGCACTCCCTTCTGGGTGTTATGGAAGAGTGG < 41bp 1 0.673305016286378 1 0.74135810136795 experiment 0.653389967427245 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DUT ENSG00000128951 CDS Human protein_coding chr15:48626685 chr15:48626677 synonymous SNV . 0 13 hm5C_associated_SNPs_16037 0 0 1 0 2 DUT chr15:48626705 5'GT 48626705 Upstream 29bp
chr17 34958603 34958603 1 + G C BLCA 34958622 + 34958602 34958642 41 GGAGGTGAGCCCGCTGCGGCCCCGGCCTTGGAGAGAGGCCG GCAGGTGAGCCCGCTGCGGCCCCGGCCTTGGAGAGAGGCCG < 41bp 1 0.494912590267771 1 0.425182163715363 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRM1 ENSG00000129282 CDS Human other chr17:34958622 chr17:34958603 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_16038 0 0 1 0 1 MRM1 chr17:34958605 5'GT 34958605 Upstream 3bp
chr17 34958603 34958603 1 + G C BLCA 34958623 + 34958603 34958643 41 GAGGTGAGCCCGCTGCGGCCCCGGCCTTGGAGAGAGGCCGG CAGGTGAGCCCGCTGCGGCCCCGGCCTTGGAGAGAGGCCGG < 41bp 1 0.347036992960653 1 0.312369823455811 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRM1 ENSG00000129282 CDS Human other chr17:34958623 chr17:34958603 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_16039 0 0 1 0 1 MRM1 chr17:34958605 5'GT 34958605 Upstream 3bp
chr19 14037643 14037643 1 + C G BLCA 14037657 + 14037637 14037677 41 GAAGCTCAGAAAGACAAGACCAGTGTGATCAAGAACACAGA GAAGCTGAGAAAGACAAGACCAGTGTGATCAAGAACACAGA < 41bp 1 0.264264322521608 1 0.195781618356705 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14037657 chr19:14037643 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_16040 0 0 0 0 2 CC2D1A chr19:14037634 3'AG 14037634 Downstream 10bp
chr19 14037643 14037643 1 + C G BLCA 14037657 + 14037637 14037677 41 GAAGCTCAGAAAGACAAGACCAGTGTGATCAAGAACACAGA GAAGCTGAGAAAGACAAGACCAGTGTGATCAAGAACACAGA < 41bp 1 0.264264322521608 1 0.195781618356705 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14037657 chr19:14037643 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_16040 0 0 0 0 2 CC2D1A chr19:14037685 5'GT 14037685 Upstream 43bp
chr2 47639699 47639699 1 + G T BLCA 47639697 + 47639677 47639717 41 TATTGCCAGAAATGGAGAATCAGGTACATGGATTATAAATG TATTGCCAGAAATGGAGAATCATGTACATGGATTATAAATG < 41bp 1 0.145207495076188 1 0.0758692026138306 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MSH2 ENSG00000095002 CDS Human protein_coding chr2:47639697 chr2:47639699 nonsynonymous SNV 0.932 5 23 hm5C_associated_SNPs_16041 0 0 1 0 1 MSH2 chr2:47639699 5'GT 47639699 Upstream 1bp
chr6 31918694 31918694 1 + C A BLCA 31918695 + 31918675 31918715 41 AACTCGAGCTTTGAGGCTTCCTCCAACTACCACTTGCCAGC AACTCGAGCTTTGAGGCTTACTCCAACTACCACTTGCCAGC < 41bp 1 0.746077214000423 1 0.859045684337616 experiment 0.507845571999154 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control CFB ENSG00000243649;ENSG00000244255 CDS Human other chr6:31918695 chr6:31918694 nonsynonymous SNV 0.904 4 20 hm5C_associated_SNPs_16042 0 0 1 0 2 CFB chr6:31918645 3'AG 31918645 Downstream 50bp
chr6 31918694 31918694 1 + C A BLCA 31918695 + 31918675 31918715 41 AACTCGAGCTTTGAGGCTTCCTCCAACTACCACTTGCCAGC AACTCGAGCTTTGAGGCTTACTCCAACTACCACTTGCCAGC < 41bp 1 0.746077214000423 1 0.859045684337616 experiment 0.507845571999154 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control CFB ENSG00000243649;ENSG00000244255 CDS Human other chr6:31918695 chr6:31918694 nonsynonymous SNV 0.904 4 20 hm5C_associated_SNPs_16042 0 0 1 0 2 CFB chr6:31918721 5'GT 31918721 Upstream 28bp
chr3 184106402 184106402 1 + G A BLCA 184106407 + 184106387 184106427 41 CCCACCCCCAGCTGGGGGACCCCATGCAGGCTGATGGGCCC CCCACCCCCAGCTGGAGGACCCCATGCAGGCTGATGGGCCC < 41bp 1 0.181192939957486 1 0.212194859981537 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHRD ENSG00000090539 CDS Human protein_coding chr3:184106407 chr3:184106402 nonsynonymous SNV 0.964 0 16 hm5C_associated_SNPs_16043 0 0 1 0 1 CHRD chr3:184106375 3'AG 184106375 Downstream 28bp
chr2 109104177 109104177 1 + C T BLCA 109104161 + 109104141 109104181 41 TTTAAATGTTATAGGCAGAACAAGCTACTGTAACCTCTGAA TTTAAATGTTATAGGCAGAACAAGCTACTGTAACCTTTGAA < 41bp 1 0.179069450600545 1 0.355598747730255 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GCC2 ENSG00000135968 CDS Human protein_coding chr2:109104161 chr2:109104177 nonsynonymous SNV 0.996 4 37 hm5C_associated_SNPs_16045 0 0 1 0 2 GCC2 chr2:109104155 3'AG 109104155 Downstream 23bp
chr2 109104177 109104177 1 + C T BLCA 109104161 + 109104141 109104181 41 TTTAAATGTTATAGGCAGAACAAGCTACTGTAACCTCTGAA TTTAAATGTTATAGGCAGAACAAGCTACTGTAACCTTTGAA < 41bp 1 0.179069450600545 1 0.355598747730255 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GCC2 ENSG00000135968 CDS Human protein_coding chr2:109104161 chr2:109104177 nonsynonymous SNV 0.996 4 37 hm5C_associated_SNPs_16045 0 0 1 0 2 GCC2 chr2:109104276 5'GT 109104276 Upstream 100bp
chr13 76124114 76124114 1 + C T BLCA 76124116 + 76124096 76124136 41 TCTGTTTCGTTTTCAGGTCACCAACCAGGTGAGTGAGGTGT TCTGTTTCGTTTTCAGGTTACCAACCAGGTGAGTGAGGTGT < 41bp 1 0.203656877492407 1 0.103965044021606 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UCHL3 ENSG00000118939 CDS Human protein_coding chr13:76124116 chr13:76124114 synonymous SNV . 0 19 hm5C_associated_SNPs_16046 0 0 1 0 2 UCHL3 chr13:76124112 3'AG 76124112 Downstream 3bp
chr13 76124114 76124114 1 + C T BLCA 76124116 + 76124096 76124136 41 TCTGTTTCGTTTTCAGGTCACCAACCAGGTGAGTGAGGTGT TCTGTTTCGTTTTCAGGTTACCAACCAGGTGAGTGAGGTGT < 41bp 1 0.203656877492407 1 0.103965044021606 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UCHL3 ENSG00000118939 CDS Human protein_coding chr13:76124116 chr13:76124114 synonymous SNV . 0 19 hm5C_associated_SNPs_16046 0 0 1 0 2 UCHL3 chr13:76124123 5'GT 76124123 Upstream 10bp
chr13 76124114 76124114 1 + C T BLCA 76124117 + 76124097 76124137 41 CTGTTTCGTTTTCAGGTCACCAACCAGGTGAGTGAGGTGTC CTGTTTCGTTTTCAGGTTACCAACCAGGTGAGTGAGGTGTC < 41bp 1 0.459652091446004 1 0.256692230701447 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UCHL3 ENSG00000118939 CDS Human protein_coding chr13:76124117 chr13:76124114 synonymous SNV . 0 18 hm5C_associated_SNPs_16047 0 0 1 0 2 UCHL3 chr13:76124112 3'AG 76124112 Downstream 3bp
chr13 76124114 76124114 1 + C T BLCA 76124117 + 76124097 76124137 41 CTGTTTCGTTTTCAGGTCACCAACCAGGTGAGTGAGGTGTC CTGTTTCGTTTTCAGGTTACCAACCAGGTGAGTGAGGTGTC < 41bp 1 0.459652091446004 1 0.256692230701447 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UCHL3 ENSG00000118939 CDS Human protein_coding chr13:76124117 chr13:76124114 synonymous SNV . 0 18 hm5C_associated_SNPs_16047 0 0 1 0 2 UCHL3 chr13:76124123 5'GT 76124123 Upstream 10bp
chr2 219679343 219679343 1 + C T BLCA 219679360 + 219679340 219679380 41 CCCCACCGCTGGCTGAGAAACAGCCAGCCTGCTACCCCCAG CCCTACCGCTGGCTGAGAAACAGCCAGCCTGCTACCCCCAG < 41bp 1 0.49020668532601 1 0.292372673749924 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219679360 chr2:219679343 nonsynonymous SNV 0.402 0 4 hm5C_associated_SNPs_16049 0 0 1 0 1 CYP27A1 chr2:219679268 3'AG 219679268 Downstream 76bp
chr1 110456967 110456967 1 + G A BLCA 110456962 + 110456942 110456982 41 AGGTGTCGGAGTACTGTAGCCACATGATTGGGAGTGGACAC AGGTGTCGGAGTACTGTAGCCACATAATTGGGAGTGGACAC < 41bp 1 0.433354823567618 1 0.497323602437973 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110456962 chr1:110456967 nonsynonymous SNV 1.000 0 26 hm5C_associated_SNPs_16050 0 0 1 0 2 CSF1 chr1:110456881 3'AG 110456881 Downstream 87bp
chr1 110456967 110456967 1 + G A BLCA 110456962 + 110456942 110456982 41 AGGTGTCGGAGTACTGTAGCCACATGATTGGGAGTGGACAC AGGTGTCGGAGTACTGTAGCCACATAATTGGGAGTGGACAC < 41bp 1 0.433354823567618 1 0.497323602437973 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110456962 chr1:110456967 nonsynonymous SNV 1.000 0 26 hm5C_associated_SNPs_16050 0 0 1 0 2 CSF1 chr1:110457003 5'GT 110457003 Upstream 37bp
chr19 41770565 41770565 1 + G C BLCA 41770577 + 41770557 41770597 41 CCGACGACGAACCGGGGCGACCCGGGCACATCAACGAGGAG CCGACGACCAACCGGGGCGACCCGGGCACATCAACGAGGAG < 41bp 1 0.415527158403482 1 0.261041343212128 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41770577 chr19:41770565 nonsynonymous SNV 0.274 0 9 hm5C_associated_SNPs_16051 0 0 1 0 1 HNRNPUL1 chr19:41770597 5'GT 41770597 Upstream 33bp
chr19 41770565 41770565 1 + G C BLCA 41770578 + 41770558 41770598 41 CGACGACGAACCGGGGCGACCCGGGCACATCAACGAGGAGG CGACGACCAACCGGGGCGACCCGGGCACATCAACGAGGAGG < 41bp 1 0.58795065451481 1 0.481073260307312 experiment 0.824098690970381 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41770578 chr19:41770565 nonsynonymous SNV 0.274 0 8 hm5C_associated_SNPs_16052 0 0 1 0 1 HNRNPUL1 chr19:41770597 5'GT 41770597 Upstream 33bp
chr19 41770565 41770565 1 + G C BLCA 41770579 + 41770559 41770599 41 GACGACGAACCGGGGCGACCCGGGCACATCAACGAGGAGGT GACGACCAACCGGGGCGACCCGGGCACATCAACGAGGAGGT < 41bp 1 0.689746024850736 1 0.646933495998383 experiment 0.620507950298527 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41770579 chr19:41770565 nonsynonymous SNV 0.274 0 7 hm5C_associated_SNPs_16053 0 0 1 0 1 HNRNPUL1 chr19:41770597 5'GT 41770597 Upstream 33bp
chr3 49742439 49742439 1 + T C BLCA 49742448 + 49742428 49742468 41 GGCCCTGGCTGTTGGGGGGCCACTGCCCCTGCCCCGGCCCG GGCCCTGGCTGCTGGGGGGCCACTGCCCCTGCCCCGGCCCG < 41bp 1 0.431428241062459 1 0.494230687618256 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49742448 chr3:49742439 nonsynonymous SNV 0.209 0 12 hm5C_associated_SNPs_16054 0 0 1 0 1 RNF123 chr3:49742417 3'AG 49742417 Downstream 23bp
chr17 4905823 4905823 1 + C G BLCA 4905833 + 4905813 4905853 41 AGTCGGGGTTCTCTGCGGGTCCGGGAGCACCCCATCCTGGG AGTCGGGGTTGTCTGCGGGTCCGGGAGCACCCCATCCTGGG < 41bp 1 0.544004760116223 1 0.644052505493164 experiment 0.911990479767555 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905833 chr17:4905823 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_16056 0 0 1 0 1 KIF1C chr17:4905759 3'AG 4905759 Downstream 65bp
chr3 188242482 188242482 1 + G A BLCA 188242472 + 188242452 188242492 41 GGGGAATCCCGGAGGCAAGACACTTGAGGAGAGGCGCTCCA GGGGAATCCCGGAGGCAAGACACTTGAGGAAAGGCGCTCCA < 41bp 1 0.200770379493223 1 0.0378702878952026 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LPP ENSG00000145012 CDS Human protein_coding chr3:188242472 chr3:188242482 synonymous SNV . 0 31 hm5C_associated_SNPs_16060 0 0 1 0 2 LPP chr3:188242453 3'AG 188242453 Downstream 30bp
chr3 188242482 188242482 1 + G A BLCA 188242472 + 188242452 188242492 41 GGGGAATCCCGGAGGCAAGACACTTGAGGAGAGGCGCTCCA GGGGAATCCCGGAGGCAAGACACTTGAGGAAAGGCGCTCCA < 41bp 1 0.200770379493223 1 0.0378702878952026 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LPP ENSG00000145012 CDS Human protein_coding chr3:188242472 chr3:188242482 synonymous SNV . 0 31 hm5C_associated_SNPs_16060 0 0 1 0 2 LPP chr3:188242575 5'GT 188242575 Upstream 94bp
chr1 6505938 6505938 1 + C G BLCA 6505928 + 6505908 6505948 41 GCCTCCTGTAGGACCACAGGCAGCTGACATCTACATGCAGA GCCTCCTGTAGGACCACAGGCAGCTGACATGTACATGCAGA < 41bp 1 0.302837668077089 1 0.611524283885956 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ESPN ENSG00000187017 CDS Human protein_coding chr1:6505928 chr1:6505938 nonsynonymous SNV 0.912 4 31 hm5C_associated_SNPs_16061 0 0 1 0 1 ESPN chr1:6505995 5'GT 6505995 Upstream 58bp
chr4 56230312 56230312 1 + G A BLCA 56230318 + 56230298 56230338 41 TACGAAGACTCTTCGAGTGCCTCTACGTCAGTGTCTTCTCC TACGAAGACTCTTCAAGTGCCTCTACGTCAGTGTCTTCTCC < 41bp 1 0.507874137293578 1 0.134117424488068 experiment 0.984251725412844 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control SRD5A3 ENSG00000128039 CDS Human protein_coding chr4:56230318 chr4:56230312 nonsynonymous SNV 0.656 4 15 hm5C_associated_SNPs_16062 1 0 1 0 1 SRD5A3 chr4:56230241 3'AG 56230241 Downstream 72bp
chr3 128631370 128631370 1 + G A BLCA 128631356 + 128631336 128631376 41 CTTTTCCTTCCCAGATGCTCCAGAAAACCTAGATGAGCAGA CTTTTCCTTCCCAGATGCTCCAGAAAACCTAGATAAGCAGA < 41bp 1 0.511157054362027 1 0.560437440872192 experiment 0.977685891275946 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128631356 chr3:128631370 nonsynonymous SNV 0.998 1 35 hm5C_associated_SNPs_16063 0 0 1 0 1 ACAD9 chr3:128631350 3'AG 128631350 Downstream 21bp
chr7 2686589 2686589 1 + G A BLCA 2686570 + 2686550 2686590 41 TTCTACTCCTTCTGGCTGTGCTGCCGGCGGCGCAAGAGCGA TTCTACTCCTTCTGGCTGTGCTGCCGGCGGCGCAAGAGCAA < 41bp 1 0.379512565749068 1 0.385442107915878 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686570 chr7:2686589 nonsynonymous SNV 0.997 1 40 hm5C_associated_SNPs_16064 0 0 1 0 1 TTYH3 chr7:2686656 5'GT 2686656 Upstream 68bp
chr11 118369132 118369132 1 + C T BLCA 118369113 + 118369093 118369133 41 ATTCTGCCAAAAGCCAGGAGCCACCGTGGGTTGCTGTCTCA ATTCTGCCAAAAGCCAGGAGCCACCGTGGGTTGCTGTCTTA < 41bp 1 0.0241337783073291 1 0.198178499937057 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118369113 chr11:118369132 synonymous SNV . 0 40 hm5C_associated_SNPs_16065 0 0 1 0 1 KMT2A chr11:118369085 3'AG 118369085 Downstream 48bp
chr12 56347534 56347534 1 + C A BLCA 56347519 + 56347499 56347539 41 ATGCTCATGGGCCCACCCCCCCGCTCCACCAATTTCTTTGG ATGCTCATGGGCCCACCCCCCCGCTCCACCAATTTATTTGG < 41bp 1 0.335984233891604 1 0.515404343605042 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56347519 chr12:56347534 nonsynonymous SNV 0.999 2 36 hm5C_associated_SNPs_16066 0 0 1 0 1 DGKA chr12:56347469 3'AG 56347469 Downstream 66bp
chrX 70360539 70360539 1 + G A BLCA 70360532 + 70360512 70360552 41 ACCCATGATAAGTACCATGACTCCAATGAGTGCCCAGGGCG ACCCATGATAAGTACCATGACTCCAATAAGTGCCCAGGGCG < 41bp 1 0.726100723576922 1 0.912848234176636 experiment 0.547798552846156 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout MED12 ENSG00000184634 CDS Human protein_coding chrX:70360532 chrX:70360539 nonsynonymous SNV 0.985 0 28 hm5C_associated_SNPs_16067 0 0 1 0 1 MED12 chrX:70360485 3'AG 70360485 Downstream 55bp
chr1 22333440 22333440 1 + C A BLCA 22333421 + 22333401 22333441 41 CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTAC < 41bp 1 0.116401568793908 1 0.265857458114624 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333421 chr1:22333440 synonymous SNV . 0 40 hm5C_associated_SNPs_16068 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 70bp
chr1 22333440 22333440 1 + C A BLCA 22333421 + 22333401 22333441 41 CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTAC < 41bp 1 0.116401568793908 1 0.265857458114624 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333421 chr1:22333440 synonymous SNV . 0 40 hm5C_associated_SNPs_16068 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 68bp
chr1 22333440 22333440 1 + C A BLCA 22333422 + 22333402 22333442 41 AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTACC < 41bp 1 0.278017877933444 1 0.546331167221069 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333422 chr1:22333440 synonymous SNV . 0 39 hm5C_associated_SNPs_16069 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 70bp
chr1 22333440 22333440 1 + C A BLCA 22333422 + 22333402 22333442 41 AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTACC < 41bp 1 0.278017877933444 1 0.546331167221069 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333422 chr1:22333440 synonymous SNV . 0 39 hm5C_associated_SNPs_16069 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 68bp
chr1 22333440 22333440 1 + C A BLCA 22333425 + 22333405 22333445 41 GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTACCTCC < 41bp 1 0.344296642083931 1 0.279507696628571 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333425 chr1:22333440 synonymous SNV . 0 36 hm5C_associated_SNPs_16070 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 70bp
chr1 22333440 22333440 1 + C A BLCA 22333425 + 22333405 22333445 41 GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTACCTCC < 41bp 1 0.344296642083931 1 0.279507696628571 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333425 chr1:22333440 synonymous SNV . 0 36 hm5C_associated_SNPs_16070 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 68bp
chr1 22333440 22333440 1 + C A BLCA 22333426 + 22333406 22333446 41 CCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCC CCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTACCTCCC < 41bp 1 0.4957151401336 1 0.638782978057861 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333426 chr1:22333440 synonymous SNV . 0 35 hm5C_associated_SNPs_16071 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 70bp
chr1 22333440 22333440 1 + C A BLCA 22333426 + 22333406 22333446 41 CCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCC CCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTACCTCCC < 41bp 1 0.4957151401336 1 0.638782978057861 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333426 chr1:22333440 synonymous SNV . 0 35 hm5C_associated_SNPs_16071 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 68bp
chr1 22333440 22333440 1 + C A BLCA 22333429 + 22333409 22333449 41 AGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCT AGCTGGGAGATGCCGTCCAGCTCGCCTCACTACCTCCCGCT < 41bp 1 0.621252242102468 1 0.422826141119003 experiment 0.757495515795064 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333429 chr1:22333440 synonymous SNV . 0 32 hm5C_associated_SNPs_16072 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 70bp
chr1 22333440 22333440 1 + C A BLCA 22333429 + 22333409 22333449 41 AGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCT AGCTGGGAGATGCCGTCCAGCTCGCCTCACTACCTCCCGCT < 41bp 1 0.621252242102468 1 0.422826141119003 experiment 0.757495515795064 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333429 chr1:22333440 synonymous SNV . 0 32 hm5C_associated_SNPs_16072 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 68bp
chr1 22333440 22333440 1 + C A BLCA 22333431 + 22333411 22333451 41 CTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGG CTGGGAGATGCCGTCCAGCTCGCCTCACTACCTCCCGCTGG < 41bp 1 0.701922450190493 1 0.726517915725708 experiment 0.596155099619014 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333431 chr1:22333440 synonymous SNV . 0 30 hm5C_associated_SNPs_16073 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 70bp
chr1 22333440 22333440 1 + C A BLCA 22333431 + 22333411 22333451 41 CTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGG CTGGGAGATGCCGTCCAGCTCGCCTCACTACCTCCCGCTGG < 41bp 1 0.701922450190493 1 0.726517915725708 experiment 0.596155099619014 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333431 chr1:22333440 synonymous SNV . 0 30 hm5C_associated_SNPs_16073 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 68bp
chr1 22333440 22333440 1 + C A BLCA 22333433 + 22333413 22333453 41 GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG GGGAGATGCCGTCCAGCTCGCCTCACTACCTCCCGCTGGTG < 41bp 1 0.254152114919128 1 0.117845356464386 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333433 chr1:22333440 synonymous SNV . 0 28 hm5C_associated_SNPs_16074 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 70bp
chr1 22333440 22333440 1 + C A BLCA 22333433 + 22333413 22333453 41 GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG GGGAGATGCCGTCCAGCTCGCCTCACTACCTCCCGCTGGTG < 41bp 1 0.254152114919128 1 0.117845356464386 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333433 chr1:22333440 synonymous SNV . 0 28 hm5C_associated_SNPs_16074 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 68bp
chr1 22333440 22333440 1 + C A BLCA 22333434 + 22333414 22333454 41 GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA GGAGATGCCGTCCAGCTCGCCTCACTACCTCCCGCTGGTGA < 41bp 1 0.244619731293236 1 0.285976469516754 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333434 chr1:22333440 synonymous SNV . 0 27 hm5C_associated_SNPs_16075 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 70bp
chr1 22333440 22333440 1 + C A BLCA 22333434 + 22333414 22333454 41 GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA GGAGATGCCGTCCAGCTCGCCTCACTACCTCCCGCTGGTGA < 41bp 1 0.244619731293236 1 0.285976469516754 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333434 chr1:22333440 synonymous SNV . 0 27 hm5C_associated_SNPs_16075 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 68bp
chr1 22333440 22333440 1 + C A BLCA 22333436 + 22333416 22333456 41 AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA AGATGCCGTCCAGCTCGCCTCACTACCTCCCGCTGGTGACA < 41bp 1 0.4479659189606 1 0.35692298412323 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333436 chr1:22333440 synonymous SNV . 0 25 hm5C_associated_SNPs_16076 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 70bp
chr1 22333440 22333440 1 + C A BLCA 22333436 + 22333416 22333456 41 AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA AGATGCCGTCCAGCTCGCCTCACTACCTCCCGCTGGTGACA < 41bp 1 0.4479659189606 1 0.35692298412323 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333436 chr1:22333440 synonymous SNV . 0 25 hm5C_associated_SNPs_16076 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 68bp
chr1 22333440 22333440 1 + C A BLCA 22333438 + 22333418 22333458 41 ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC ATGCCGTCCAGCTCGCCTCACTACCTCCCGCTGGTGACATC < 41bp 1 0.269594780547981 1 0.0731257200241089 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333438 chr1:22333440 synonymous SNV . 0 23 hm5C_associated_SNPs_16077 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 70bp
chr1 22333440 22333440 1 + C A BLCA 22333438 + 22333418 22333458 41 ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC ATGCCGTCCAGCTCGCCTCACTACCTCCCGCTGGTGACATC < 41bp 1 0.269594780547981 1 0.0731257200241089 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333438 chr1:22333440 synonymous SNV . 0 23 hm5C_associated_SNPs_16077 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 68bp
chr1 22333440 22333440 1 + C A BLCA 22333441 + 22333421 22333461 41 CCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTT CCGTCCAGCTCGCCTCACTACCTCCCGCTGGTGACATCCTT < 41bp 1 0.0582959441686175 1 0.0263457298278809 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333441 chr1:22333440 synonymous SNV . 0 20 hm5C_associated_SNPs_16078 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 70bp
chr1 22333440 22333440 1 + C A BLCA 22333441 + 22333421 22333461 41 CCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTT CCGTCCAGCTCGCCTCACTACCTCCCGCTGGTGACATCCTT < 41bp 1 0.0582959441686175 1 0.0263457298278809 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333441 chr1:22333440 synonymous SNV . 0 20 hm5C_associated_SNPs_16078 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 68bp
chr1 22333440 22333440 1 + C A BLCA 22333442 + 22333422 22333462 41 CGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTC CGTCCAGCTCGCCTCACTACCTCCCGCTGGTGACATCCTTC < 41bp 1 0.440578750205578 1 0.402382850646973 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333442 chr1:22333440 synonymous SNV . 0 19 hm5C_associated_SNPs_16079 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 70bp
chr1 22333440 22333440 1 + C A BLCA 22333442 + 22333422 22333462 41 CGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTC CGTCCAGCTCGCCTCACTACCTCCCGCTGGTGACATCCTTC < 41bp 1 0.440578750205578 1 0.402382850646973 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333442 chr1:22333440 synonymous SNV . 0 19 hm5C_associated_SNPs_16079 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 68bp
chr1 22333440 22333440 1 + C A BLCA 22333444 + 22333424 22333464 41 TCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCC TCCAGCTCGCCTCACTACCTCCCGCTGGTGACATCCTTCCC < 41bp 1 0.383868885025826 1 0.357888728380203 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333444 chr1:22333440 synonymous SNV . 0 17 hm5C_associated_SNPs_16080 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 70bp
chr1 22333440 22333440 1 + C A BLCA 22333444 + 22333424 22333464 41 TCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCC TCCAGCTCGCCTCACTACCTCCCGCTGGTGACATCCTTCCC < 41bp 1 0.383868885025826 1 0.357888728380203 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333444 chr1:22333440 synonymous SNV . 0 17 hm5C_associated_SNPs_16080 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 68bp
chr1 22333440 22333440 1 + C A BLCA 22333445 + 22333425 22333465 41 CCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCA CCAGCTCGCCTCACTACCTCCCGCTGGTGACATCCTTCCCA < 41bp 1 0.33705637030339 1 0.267745137214661 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333445 chr1:22333440 synonymous SNV . 0 16 hm5C_associated_SNPs_16081 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 70bp
chr1 22333440 22333440 1 + C A BLCA 22333445 + 22333425 22333465 41 CCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCA CCAGCTCGCCTCACTACCTCCCGCTGGTGACATCCTTCCCA < 41bp 1 0.33705637030339 1 0.267745137214661 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333445 chr1:22333440 synonymous SNV . 0 16 hm5C_associated_SNPs_16081 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 68bp
chr1 22333440 22333440 1 + C A BLCA 22333446 + 22333426 22333466 41 CAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCAA CAGCTCGCCTCACTACCTCCCGCTGGTGACATCCTTCCCAA < 41bp 1 0.642496725352132 1 0.681260406970978 experiment 0.715006549295736 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333446 chr1:22333440 synonymous SNV . 0 15 hm5C_associated_SNPs_16082 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 70bp
chr1 22333440 22333440 1 + C A BLCA 22333446 + 22333426 22333466 41 CAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCAA CAGCTCGCCTCACTACCTCCCGCTGGTGACATCCTTCCCAA < 41bp 1 0.642496725352132 1 0.681260406970978 experiment 0.715006549295736 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333446 chr1:22333440 synonymous SNV . 0 15 hm5C_associated_SNPs_16082 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 68bp
chr6 44374146 44374146 1 + C T BLCA 44374158 + 44374138 44374178 41 TCTTCAAACTAGTGGTGTTTCTGAATTTACTAAAAAGAGAA TCTTCAAATTAGTGGTGTTTCTGAATTTACTAAAAAGAGAA < 41bp 1 0.765108964792738 1 0.56145703792572 experiment 0.469782070414525 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC5L ENSG00000096401 CDS Human protein_coding chr6:44374158 chr6:44374146 nonsynonymous SNV 0.999 1 9 hm5C_associated_SNPs_16083 0 0 1 0 2 CDC5L chr6:44374060 3'AG 44374060 Downstream 87bp
chr6 44374146 44374146 1 + C T BLCA 44374158 + 44374138 44374178 41 TCTTCAAACTAGTGGTGTTTCTGAATTTACTAAAAAGAGAA TCTTCAAATTAGTGGTGTTTCTGAATTTACTAAAAAGAGAA < 41bp 1 0.765108964792738 1 0.56145703792572 experiment 0.469782070414525 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC5L ENSG00000096401 CDS Human protein_coding chr6:44374158 chr6:44374146 nonsynonymous SNV 0.999 1 9 hm5C_associated_SNPs_16083 0 0 1 0 2 CDC5L chr6:44374204 5'GT 44374204 Upstream 59bp
chr10 104129979 104129979 1 + G C BLCA 104129996 + 104129976 104130016 41 CTGGAGTCACTACAGGAGCTCATGAAGGTAAAGGATGAAGA CTGCAGTCACTACAGGAGCTCATGAAGGTAAAGGATGAAGA < 41bp 1 0.219337758582516 1 0.184021890163422 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129996 chr10:104129979 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_16084 0 0 1 0 2 GBF1 chr10:104129931 3'AG 104129931 Downstream 49bp
chr10 104129979 104129979 1 + G C BLCA 104129996 + 104129976 104130016 41 CTGGAGTCACTACAGGAGCTCATGAAGGTAAAGGATGAAGA CTGCAGTCACTACAGGAGCTCATGAAGGTAAAGGATGAAGA < 41bp 1 0.219337758582516 1 0.184021890163422 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129996 chr10:104129979 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_16084 0 0 1 0 2 GBF1 chr10:104130002 5'GT 104130002 Upstream 24bp
chr16 30953717 30953717 1 + C G BLCA 30953726 + 30953706 30953746 41 GCTGGTGCTCTCTGGCTGCTCCTGGCTCTCTGTCTCTGCCC GCTGGTGCTCTGTGGCTGCTCCTGGCTCTCTGTCTCTGCCC < 41bp 1 0.466028957996939 1 0.197158813476562 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30953726 chr16:30953717 nonsynonymous SNV 0.992 0 12 hm5C_associated_SNPs_16086 0 0 1 0 1 FBXL19 chr16:30953696 3'AG 30953696 Downstream 22bp
chr5 92923700 92923700 1 + G T BLCA 92923717 + 92923697 92923737 41 AACGGCCACTGCTACCTGTCCGGCTACATCTCGCTGCTGCT AACTGCCACTGCTACCTGTCCGGCTACATCTCGCTGCTGCT < 41bp 1 0.335428480239083 1 0.36481511592865 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NR2F1 ENSG00000175745 CDS Human protein_coding chr5:92923717 chr5:92923700 nonsynonymous SNV 0.998 1 4 hm5C_associated_SNPs_16090 0 0 1 0 1 NR2F1 chr5:92923623 3'AG 92923623 Downstream 78bp
chr1 55452087 55452087 1 + C T BLCA 55452081 + 55452061 55452101 41 CACCTCTCCAGAGACCTGTACTACCTCACTGTGGAGTCCTC CACCTCTCCAGAGACCTGTACTACCTTACTGTGGAGTCCTC < 41bp 1 0.151011149076997 1 0.0915616452693939 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM61 ENSG00000143001 CDS Human protein_coding chr1:55452081 chr1:55452087 synonymous SNV . 0 27 hm5C_associated_SNPs_16091 0 0 0 0 1 TMEM61 chr1:55452119 5'GT 55452119 Upstream 33bp
chr19 14580222 14580222 1 + C T BLCA 14580202 + 14580182 14580222 41 CAGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTC CAGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTT < 41bp 1 0.0384741283246342 1 0.0937943756580353 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580202 chr19:14580222 synonymous SNV . 0 41 hm5C_associated_SNPs_16092 0 0 1 0 1 PKN1 chr19:14580153 3'AG 14580153 Downstream 70bp
chr19 14580222 14580222 1 + C T BLCA 14580203 + 14580183 14580223 41 AGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCG AGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTTG < 41bp 1 0.0229249341712729 1 0.0640327930450439 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580203 chr19:14580222 synonymous SNV . 0 40 hm5C_associated_SNPs_16093 0 0 1 0 1 PKN1 chr19:14580153 3'AG 14580153 Downstream 70bp
chr19 14580222 14580222 1 + C T BLCA 14580207 + 14580187 14580227 41 ACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCGGCTG ACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTTGGCTG < 41bp 1 0.396508386240895 1 0.672582387924194 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580207 chr19:14580222 synonymous SNV . 0 36 hm5C_associated_SNPs_16094 0 0 1 0 1 PKN1 chr19:14580153 3'AG 14580153 Downstream 70bp
chr11 85977208 85977208 1 + G C BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATCATGAA < 41bp 1 0.179394170147215 1 0.130336463451385 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977208 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_16095 0 0 1 13 2 EED chr11:85977125 3'AG 85977125 Downstream 84bp
chr11 85977208 85977208 1 + G C BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATCATGAA < 41bp 1 0.179394170147215 1 0.130336463451385 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977208 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_16095 0 0 1 13 2 EED chr11:85977258 5'GT 85977258 Upstream 51bp
chr11 85977209 85977209 1 + A T BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGTTGAA < 41bp 1 0.163726994972108 1 0.0997744798660278 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977209 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_16097 0 0 1 13 2 EED chr11:85977125 3'AG 85977125 Downstream 85bp
chr11 85977209 85977209 1 + A T BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGTTGAA < 41bp 1 0.163726994972108 1 0.0997744798660278 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977209 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_16097 0 0 1 13 2 EED chr11:85977258 5'GT 85977258 Upstream 50bp
chr5 176863486 176863486 1 + C T BLCA 176863468 + 176863448 176863488 41 GAGGTGAAGGAGCACCCCCTCTTTAAGAAGCTGAACTTCAA GAGGTGAAGGAGCACCCCCTCTTTAAGAAGCTGAACTTTAA < 41bp 1 0.313296053644267 1 0.168404310941696 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRK6 ENSG00000198055 CDS Human protein_coding chr5:176863468 chr5:176863486 synonymous SNV . 0 39 hm5C_associated_SNPs_16098 0 0 1 0 2 GRK6 chr5:176863394 3'AG 176863394 Downstream 93bp
chr5 176863486 176863486 1 + C T BLCA 176863468 + 176863448 176863488 41 GAGGTGAAGGAGCACCCCCTCTTTAAGAAGCTGAACTTCAA GAGGTGAAGGAGCACCCCCTCTTTAAGAAGCTGAACTTTAA < 41bp 1 0.313296053644267 1 0.168404310941696 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRK6 ENSG00000198055 CDS Human protein_coding chr5:176863468 chr5:176863486 synonymous SNV . 0 39 hm5C_associated_SNPs_16098 0 0 1 0 2 GRK6 chr5:176863531 5'GT 176863531 Upstream 46bp
chr19 36278140 36278140 1 + G A BLCA 36278132 + 36278112 36278152 41 TCCTGCGCCCTGGGGGTGCCCCACCCCCGCCCCCTAAGAAC TCCTGCGCCCTGGGGGTGCCCCACCCCCACCCCCTAAGAAC < 41bp 1 0.164315909674417 1 0.200774192810059 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36278132 chr19:36278140 synonymous SNV . 0 29 hm5C_associated_SNPs_16099 0 0 0 0 1 ARHGAP33 chr19:36278070 3'AG 36278070 Downstream 71bp
chr10 73044510 73044510 1 + C T BLCA 73044490 + 73044470 73044510 41 CTCCCAGGCCTGCGGGTGCGCGAGGTGCAGATCGAGGTGTC CTCCCAGGCCTGCGGGTGCGCGAGGTGCAGATCGAGGTGTT < 41bp 1 0.739900303415717 1 0.855061173439026 experiment 0.520199393168567 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UNC5B ENSG00000107731 CDS Human protein_coding chr10:73044490 chr10:73044510 nonsynonymous SNV 0.965 4 41 hm5C_associated_SNPs_16100 0 0 1 0 1 UNC5B chr10:73044477 3'AG 73044477 Downstream 34bp
chr11 9597625 9597625 1 + G C BLCA 9597628 + 9597608 9597648 41 GTGTCGTCGTAGAAAGAGAACGTATTGGAATGAGTAAGTCG GTGTCGTCGTAGAAAGACAACGTATTGGAATGAGTAAGTCG < 41bp 1 0.074860778965156 1 0.0902983248233795 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WEE1 ENSG00000166483 CDS Human protein_coding chr11:9597628 chr11:9597625 nonsynonymous SNV 0.965 1 18 hm5C_associated_SNPs_16101 0 0 1 0 1 WEE1 chr11:9597640 5'GT 9597640 Upstream 16bp
chr14 102484885 102484885 1 + A T BLCA 102484872 + 102484852 102484892 41 TACGGCACCTTCAACCGCGCCATGCTGAGGCTCATTCCATC TACGGCACCTTCAACCGCGCCATGCTGAGGCTCTTTCCATC < 41bp 1 0.0667666027231045 1 0.0738312005996704 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102484872 chr14:102484885 nonsynonymous SNV 0.633 2 34 hm5C_associated_SNPs_16102 0 0 1 0 2 DYNC1H1 chr14:102484788 3'AG 102484788 Downstream 98bp
chr14 102484885 102484885 1 + A T BLCA 102484872 + 102484852 102484892 41 TACGGCACCTTCAACCGCGCCATGCTGAGGCTCATTCCATC TACGGCACCTTCAACCGCGCCATGCTGAGGCTCTTTCCATC < 41bp 1 0.0667666027231045 1 0.0738312005996704 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102484872 chr14:102484885 nonsynonymous SNV 0.633 2 34 hm5C_associated_SNPs_16102 0 0 1 0 2 DYNC1H1 chr14:102484953 5'GT 102484953 Upstream 69bp
chr2 32631587 32631587 1 + C T BLCA 32631577 + 32631557 32631597 41 TTGATTTAAGTGATGATTTACTGGAGGATTCAGACAGTGAA TTGATTTAAGTGATGATTTACTGGAGGATTTAGACAGTGAA < 41bp 1 0.284373992332005 1 0.728187680244446 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32631577 chr2:32631587 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_16103 0 0 1 0 2 BIRC6 chr2:32631567 3'AG 32631567 Downstream 21bp
chr2 32631587 32631587 1 + C T BLCA 32631577 + 32631557 32631597 41 TTGATTTAAGTGATGATTTACTGGAGGATTCAGACAGTGAA TTGATTTAAGTGATGATTTACTGGAGGATTTAGACAGTGAA < 41bp 1 0.284373992332005 1 0.728187680244446 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32631577 chr2:32631587 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_16103 0 0 1 0 2 BIRC6 chr2:32631625 5'GT 32631625 Upstream 39bp
chr5 64082363 64082363 1 + C G BLCA 64082382 + 64082362 64082402 41 TCCTTTTGATGACATCATTCCAAGGGAAATTAAAAGGCTGA TGCTTTTGATGACATCATTCCAAGGGAAATTAAAAGGCTGA < 41bp 1 0.413649795483411 1 0.821614146232605 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64082382 chr5:64082363 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_16104 0 0 1 0 2 CWC27 chr5:64082351 3'AG 64082351 Downstream 13bp
chr5 64082363 64082363 1 + C G BLCA 64082382 + 64082362 64082402 41 TCCTTTTGATGACATCATTCCAAGGGAAATTAAAAGGCTGA TGCTTTTGATGACATCATTCCAAGGGAAATTAAAAGGCTGA < 41bp 1 0.413649795483411 1 0.821614146232605 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64082382 chr5:64082363 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_16104 0 0 1 0 2 CWC27 chr5:64082454 5'GT 64082454 Upstream 92bp
chrX 15822263 15822263 1 + G C BLCA 15822264 + 15822244 15822284 41 AGGAACAATGGGAAGAACAGCAGAGGAAAGAGAGAGAAGAG AGGAACAATGGGAAGAACACCAGAGGAAAGAGAGAGAAGAG < 41bp 1 0.646814843461457 1 0.61371386051178 experiment 0.706370313077085 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZRSR2 ENSG00000169249 CDS Human protein_coding chrX:15822264 chrX:15822263 nonsynonymous SNV 0.996 2 20 hm5C_associated_SNPs_16105 0 0 1 0 2 ZRSR2 chrX:15822234 3'AG 15822234 Downstream 30bp
chrX 15822263 15822263 1 + G C BLCA 15822264 + 15822244 15822284 41 AGGAACAATGGGAAGAACAGCAGAGGAAAGAGAGAGAAGAG AGGAACAATGGGAAGAACACCAGAGGAAAGAGAGAGAAGAG < 41bp 1 0.646814843461457 1 0.61371386051178 experiment 0.706370313077085 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZRSR2 ENSG00000169249 CDS Human protein_coding chrX:15822264 chrX:15822263 nonsynonymous SNV 0.996 2 20 hm5C_associated_SNPs_16105 0 0 1 0 2 ZRSR2 chrX:15822320 5'GT 15822320 Upstream 58bp
chr12 109536302 109536302 1 + G A BLCA 109536312 + 109536292 109536332 41 CCTCGCCGCTGAGTGCCGAGCAGTTGGACCGGATCCAGAGG CCTCGCCGCTAAGTGCCGAGCAGTTGGACCGGATCCAGAGG < 41bp 1 0.504980173285952 1 0.416076898574829 experiment 0.990039653428096 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109536312 chr12:109536302 synonymous SNV . 0 11 hm5C_associated_SNPs_16106 0 0 1 0 1 UNG chr12:109536237 3'AG 109536237 Downstream 66bp
chr19 47491290 47491290 1 + G C BLCA 47491274 + 47491254 47491294 41 ACGGAAGGCATCTACCGGGTCAGCGGGAACAAGTCTGAGAT ACGGAAGGCATCTACCGGGTCAGCGGGAACAAGTCTCAGAT < 41bp 1 0.57616840091156 1 0.459208875894547 experiment 0.84766319817688 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491274 chr19:47491290 nonsynonymous SNV 0.938 1 37 hm5C_associated_SNPs_16107 0 0 1 0 2 ARHGAP35 chr19:47491246 3'AG 47491246 Downstream 45bp
chr19 47491290 47491290 1 + G C BLCA 47491274 + 47491254 47491294 41 ACGGAAGGCATCTACCGGGTCAGCGGGAACAAGTCTGAGAT ACGGAAGGCATCTACCGGGTCAGCGGGAACAAGTCTCAGAT < 41bp 1 0.57616840091156 1 0.459208875894547 experiment 0.84766319817688 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491274 chr19:47491290 nonsynonymous SNV 0.938 1 37 hm5C_associated_SNPs_16107 0 0 1 0 2 ARHGAP35 chr19:47491323 5'GT 47491323 Upstream 34bp
chr19 47491290 47491290 1 + G C BLCA 47491283 + 47491263 47491303 41 ATCTACCGGGTCAGCGGGAACAAGTCTGAGATGGAGAGTCT ATCTACCGGGTCAGCGGGAACAAGTCTCAGATGGAGAGTCT < 41bp 1 0.350783616332153 1 0.284594416618347 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491283 chr19:47491290 nonsynonymous SNV 0.938 1 28 hm5C_associated_SNPs_16108 0 0 1 0 2 ARHGAP35 chr19:47491246 3'AG 47491246 Downstream 45bp
chr19 47491290 47491290 1 + G C BLCA 47491283 + 47491263 47491303 41 ATCTACCGGGTCAGCGGGAACAAGTCTGAGATGGAGAGTCT ATCTACCGGGTCAGCGGGAACAAGTCTCAGATGGAGAGTCT < 41bp 1 0.350783616332153 1 0.284594416618347 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491283 chr19:47491290 nonsynonymous SNV 0.938 1 28 hm5C_associated_SNPs_16108 0 0 1 0 2 ARHGAP35 chr19:47491323 5'GT 47491323 Upstream 34bp
chr15 99459919 99459919 1 + A C BLCA 99459934 + 99459914 99459954 41 CAGGAAGTATGCCGACGGCACCATCGACATTGAGGAGGTCA CAGGACGTATGCCGACGGCACCATCGACATTGAGGAGGTCA < 41bp 1 0.00960147416879578 1 0.0546481907367706 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IGF1R ENSG00000140443 CDS Human protein_coding chr15:99459934 chr15:99459919 nonsynonymous SNV 0.989 1 6 hm5C_associated_SNPs_16115 0 0 1 0 1 IGF1R chr15:99459901 3'AG 99459901 Downstream 19bp
chr11 46895138 46895138 1 - T C BLCA 46895143 - 46895123 46895163 41 ACACTGGGCTCTCCCCAAGGCGAGCAGACCTGAACGGCAGC ACACTGGGCTCTCCCCAAGGCGAGCGGACCTGAACGGCAGC < 41bp 1 0.256899559928907 1 0.668308734893799 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP4 ENSG00000134569 CDS Human protein_coding chr11:46895143 chr11:46895138 synonymous SNV . 0 26 hm5C_associated_SNPs_16117 0 0 1 0 1 LRP4 chr11:46895144 3'AG 46895144 Downstream 7bp
chr8 145697774 145697774 1 + C T BLCA 145697780 + 145697760 145697800 41 GGGCCTCCCGAGCGCCTGGCCGTGAGGCAGGGCCCAGAAGG GGGCCTCCCGAGCGTCTGGCCGTGAGGCAGGGCCCAGAAGG < 41bp 1 0.714372700814768 1 0.602714717388153 experiment 0.571254598370464 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145697780 chr8:145697774 synonymous SNV . 0 15 hm5C_associated_SNPs_16118 0 0 1 0 2 KIFC2 chr8:145697744 3'AG 145697744 Downstream 31bp
chr8 145697774 145697774 1 + C T BLCA 145697780 + 145697760 145697800 41 GGGCCTCCCGAGCGCCTGGCCGTGAGGCAGGGCCCAGAAGG GGGCCTCCCGAGCGTCTGGCCGTGAGGCAGGGCCCAGAAGG < 41bp 1 0.714372700814768 1 0.602714717388153 experiment 0.571254598370464 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145697780 chr8:145697774 synonymous SNV . 0 15 hm5C_associated_SNPs_16118 0 0 1 0 2 KIFC2 chr8:145697867 5'GT 145697867 Upstream 94bp
chr7 91981884 91981884 1 + G T BLCA 91981887 + 91981867 91981907 41 AGGGTCAAATACATCTGGATCTGATACACTCAGCTTCCCAT AGGGTCAAATACATCTGTATCTGATACACTCAGCTTCCCAT < 41bp 1 0.367405534334521 1 0.0640631020069122 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:91981887 chr7:91981884 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_16120 0 0 1 0 2 ANKIB1 chr7:91981790 3'AG 91981790 Downstream 95bp
chr7 91981884 91981884 1 + G T BLCA 91981887 + 91981867 91981907 41 AGGGTCAAATACATCTGGATCTGATACACTCAGCTTCCCAT AGGGTCAAATACATCTGTATCTGATACACTCAGCTTCCCAT < 41bp 1 0.367405534334521 1 0.0640631020069122 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:91981887 chr7:91981884 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_16120 0 0 1 0 2 ANKIB1 chr7:91981956 5'GT 91981956 Upstream 73bp
chr1 26885394 26885394 1 + G T BLCA 26885380 + 26885360 26885400 41 GCCACCGGCCTGATGGAAGACGACGGCAAGCCTCGTGCCCC GCCACCGGCCTGATGGAAGACGACGGCAAGCCTCTTGCCCC < 41bp 1 0.772253012055242 1 0.598769545555115 experiment 0.455493975889516 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26885380 chr1:26885394 nonsynonymous SNV 0.357 0 35 hm5C_associated_SNPs_16122 0 0 1 0 2 RPS6KA1 chr1:26885298 3'AG 26885298 Downstream 97bp
chr1 26885394 26885394 1 + G T BLCA 26885380 + 26885360 26885400 41 GCCACCGGCCTGATGGAAGACGACGGCAAGCCTCGTGCCCC GCCACCGGCCTGATGGAAGACGACGGCAAGCCTCTTGCCCC < 41bp 1 0.772253012055242 1 0.598769545555115 experiment 0.455493975889516 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26885380 chr1:26885394 nonsynonymous SNV 0.357 0 35 hm5C_associated_SNPs_16122 0 0 1 0 2 RPS6KA1 chr1:26885428 5'GT 26885428 Upstream 35bp
chr16 90028237 90028237 1 + C T BLCA 90028230 + 90028210 90028250 41 TGGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAA TGGAACGACCTGGCTGTGATCCCTGCATGCGTTGTACACAA < 41bp 1 0.405692750381517 1 0.17419508099556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028230 chr16:90028237 nonsynonymous SNV 0.106 4 28 hm5C_associated_SNPs_16123 0 0 1 0 2 DEF8 chr16:90028145 3'AG 90028145 Downstream 93bp
chr16 90028237 90028237 1 + C T BLCA 90028230 + 90028210 90028250 41 TGGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAA TGGAACGACCTGGCTGTGATCCCTGCATGCGTTGTACACAA < 41bp 1 0.405692750381517 1 0.17419508099556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028230 chr16:90028237 nonsynonymous SNV 0.106 4 28 hm5C_associated_SNPs_16123 0 0 1 0 2 DEF8 chr16:90028272 5'GT 90028272 Upstream 36bp
chr16 90028237 90028237 1 + C T BLCA 90028231 + 90028211 90028251 41 GGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAAC GGAACGACCTGGCTGTGATCCCTGCATGCGTTGTACACAAC < 41bp 1 0.143207807037368 1 0.208404570817947 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028231 chr16:90028237 nonsynonymous SNV 0.106 4 27 hm5C_associated_SNPs_16124 0 0 1 0 2 DEF8 chr16:90028145 3'AG 90028145 Downstream 93bp
chr16 90028237 90028237 1 + C T BLCA 90028231 + 90028211 90028251 41 GGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAAC GGAACGACCTGGCTGTGATCCCTGCATGCGTTGTACACAAC < 41bp 1 0.143207807037368 1 0.208404570817947 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028231 chr16:90028237 nonsynonymous SNV 0.106 4 27 hm5C_associated_SNPs_16124 0 0 1 0 2 DEF8 chr16:90028272 5'GT 90028272 Upstream 36bp
chr4 123260523 123260523 1 + G C BLCA 123260543 + 123260523 123260563 41 GAGTGGAACAAAGACTTCTGCTAGCAAAACTGGAATACCAG CAGTGGAACAAAGACTTCTGCTAGCAAAACTGGAATACCAG < 41bp 1 0.112176000887359 1 0.357998549938202 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123260543 chr4:123260523 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_16125 0 0 1 0 1 KIAA1109 chr4:123260563 5'GT 123260563 Upstream 41bp
chr16 31131792 31131792 1 + G A BLCA 31131787 + 31131767 31131807 41 GAGCAGCCTGAGCGCAAGATCACTCGCAACCAAAAGCGCAA GAGCAGCCTGAGCGCAAGATCACTCACAACCAAAAGCGCAA < 41bp 1 0.220509585604551 1 0.0524667799472809 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KAT8 ENSG00000103510 CDS Human protein_coding chr16:31131787 chr16:31131792 nonsynonymous SNV 0.998 4 26 hm5C_associated_SNPs_16126 0 0 1 0 1 KAT8 chr16:31131835 5'GT 31131835 Upstream 44bp
chr16 2225896 2225896 1 + A G BLCA 2225897 + 2225877 2225917 41 ACGTCTGGTGGCAGCGTCTACTCCATTGCTGTGACAAATCA ACGTCTGGTGGCAGCGTCTGCTCCATTGCTGTGACAAATCA < 41bp 1 0.743637118836033 1 0.895953774452209 experiment 0.512725762327934 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TRAF7 ENSG00000131653 CDS Human protein_coding chr16:2225897 chr16:2225896 nonsynonymous SNV 0.992 4 20 hm5C_associated_SNPs_16127 0 0 1 0 2 TRAF7 chr16:2225835 3'AG 2225835 Downstream 62bp
chr16 2225896 2225896 1 + A G BLCA 2225897 + 2225877 2225917 41 ACGTCTGGTGGCAGCGTCTACTCCATTGCTGTGACAAATCA ACGTCTGGTGGCAGCGTCTGCTCCATTGCTGTGACAAATCA < 41bp 1 0.743637118836033 1 0.895953774452209 experiment 0.512725762327934 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TRAF7 ENSG00000131653 CDS Human protein_coding chr16:2225897 chr16:2225896 nonsynonymous SNV 0.992 4 20 hm5C_associated_SNPs_16127 0 0 1 0 2 TRAF7 chr16:2225954 5'GT 2225954 Upstream 59bp
chr11 46397494 46397494 1 + G T BLCA 46397500 + 46397480 46397520 41 AAGGAGCAGCTCAAGGAGGCCTGTGAGTGCGGTGGGGCGGC AAGGAGCAGCTCAATGAGGCCTGTGAGTGCGGTGGGGCGGC < 41bp 1 0.280068369183867 1 0.196340352296829 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46397500 chr11:46397494 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_16128 0 0 1 0 2 DGKZ chr11:46397401 3'AG 46397401 Downstream 94bp
chr11 46397494 46397494 1 + G T BLCA 46397500 + 46397480 46397520 41 AAGGAGCAGCTCAAGGAGGCCTGTGAGTGCGGTGGGGCGGC AAGGAGCAGCTCAATGAGGCCTGTGAGTGCGGTGGGGCGGC < 41bp 1 0.280068369183867 1 0.196340352296829 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46397500 chr11:46397494 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_16128 0 0 1 0 2 DGKZ chr11:46397501 5'GT 46397501 Upstream 8bp
chr9 140100321 140100321 1 + G T BLCA 140100319 + 140100299 140100339 41 CTGGGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGT CTGGGTCGCGAGGCCCGGCGCCTGCGGCTTGGCTGCCGGGT < 41bp 1 0.128618230667267 1 0.184174299240112 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100319 chr9:140100321 nonsynonymous SNV 0.947 1 23 hm5C_associated_SNPs_16130 0 0 0 0 1 NDOR1 chr9:140100364 5'GT 140100364 Upstream 44bp
chr9 140100321 140100321 1 + G T BLCA 140100320 + 140100300 140100340 41 TGGGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGTG TGGGTCGCGAGGCCCGGCGCCTGCGGCTTGGCTGCCGGGTG < 41bp 1 0.639151629839851 1 0.433261215686798 experiment 0.721696740320299 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100320 chr9:140100321 nonsynonymous SNV 0.947 1 22 hm5C_associated_SNPs_16131 0 0 0 0 1 NDOR1 chr9:140100364 5'GT 140100364 Upstream 44bp
chr9 140100321 140100321 1 + G T BLCA 140100331 + 140100311 140100351 41 GCCCGGCGCCGGCGGCTTGGCTGCCGGGTGCAGGCCCTGGA GCCCGGCGCCTGCGGCTTGGCTGCCGGGTGCAGGCCCTGGA < 41bp 1 0.615752436108919 1 0.257623314857483 experiment 0.768495127782162 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100331 chr9:140100321 nonsynonymous SNV 0.947 1 11 hm5C_associated_SNPs_16132 0 0 0 0 1 NDOR1 chr9:140100364 5'GT 140100364 Upstream 44bp
chr9 133506081 133506081 1 + C T BLCA 133506078 + 133506058 133506098 41 CGTGGAGCTTCAGAGGAACCCCCCTCCCAACAGCGACCCCA CGTGGAGCTTCAGAGGAACCCCCTTCCCAACAGCGACCCCA < 41bp 1 0.151981227461064 1 0.0907883942127228 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133506078 chr9:133506081 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_16133 0 0 1 0 2 FUBP3 chr9:133506015 3'AG 133506015 Downstream 67bp
chr9 133506081 133506081 1 + C T BLCA 133506078 + 133506058 133506098 41 CGTGGAGCTTCAGAGGAACCCCCCTCCCAACAGCGACCCCA CGTGGAGCTTCAGAGGAACCCCCTTCCCAACAGCGACCCCA < 41bp 1 0.151981227461064 1 0.0907883942127228 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133506078 chr9:133506081 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_16133 0 0 1 0 2 FUBP3 chr9:133506175 5'GT 133506175 Upstream 95bp
chr9 133506081 133506081 1 + C T BLCA 133506080 + 133506060 133506100 41 TGGAGCTTCAGAGGAACCCCCCTCCCAACAGCGACCCCAAC TGGAGCTTCAGAGGAACCCCCTTCCCAACAGCGACCCCAAC < 41bp 1 0.104386420986228 1 0.478390276432037 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133506080 chr9:133506081 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_16134 0 0 1 0 2 FUBP3 chr9:133506015 3'AG 133506015 Downstream 67bp
chr9 133506081 133506081 1 + C T BLCA 133506080 + 133506060 133506100 41 TGGAGCTTCAGAGGAACCCCCCTCCCAACAGCGACCCCAAC TGGAGCTTCAGAGGAACCCCCTTCCCAACAGCGACCCCAAC < 41bp 1 0.104386420986228 1 0.478390276432037 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133506080 chr9:133506081 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_16134 0 0 1 0 2 FUBP3 chr9:133506175 5'GT 133506175 Upstream 95bp
chr11 64950985 64950985 1 + C G BLCA 64950967 + 64950947 64950987 41 GACTGCTGGCTCTTGGCGGCCATCGCCTCCCTCACTCTCAA GACTGCTGGCTCTTGGCGGCCATCGCCTCCCTCACTCTGAA < 41bp 1 0.190908110586063 1 0.115455061197281 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64950967 chr11:64950985 synonymous SNV . 0 39 hm5C_associated_SNPs_16145 0 0 0 0 2 CAPN1 chr11:64950945 3'AG 64950945 Downstream 41bp
chr11 64950985 64950985 1 + C G BLCA 64950967 + 64950947 64950987 41 GACTGCTGGCTCTTGGCGGCCATCGCCTCCCTCACTCTCAA GACTGCTGGCTCTTGGCGGCCATCGCCTCCCTCACTCTGAA < 41bp 1 0.190908110586063 1 0.115455061197281 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64950967 chr11:64950985 synonymous SNV . 0 39 hm5C_associated_SNPs_16145 0 0 0 0 2 CAPN1 chr11:64951063 5'GT 64951063 Upstream 79bp
chr16 31131791 31131791 1 + C T BLCA 31131787 + 31131767 31131807 41 GAGCAGCCTGAGCGCAAGATCACTCGCAACCAAAAGCGCAA GAGCAGCCTGAGCGCAAGATCACTTGCAACCAAAAGCGCAA < 41bp 1 0.353636189577647 1 0.0568622052669525 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KAT8 ENSG00000103510 CDS Human protein_coding chr16:31131787 chr16:31131791 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_16147 0 0 1 0 1 KAT8 chr16:31131835 5'GT 31131835 Upstream 45bp
chrX 47030517 47030517 1 + C A BLCA 47030525 + 47030505 47030545 41 CCAGGCTTCCCCCGAGACGGCGACTATCGGGACCAGGACTA CCAGGCTTCCCCAGAGACGGCGACTATCGGGACCAGGACTA < 41bp 1 0.49622556081034 1 0.123127549886703 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030525 chrX:47030517 synonymous SNV . 0 13 hm5C_associated_SNPs_16148 0 0 0 0 2 RBM10 chrX:47030427 3'AG 47030427 Downstream 91bp
chrX 47030517 47030517 1 + C A BLCA 47030525 + 47030505 47030545 41 CCAGGCTTCCCCCGAGACGGCGACTATCGGGACCAGGACTA CCAGGCTTCCCCAGAGACGGCGACTATCGGGACCAGGACTA < 41bp 1 0.49622556081034 1 0.123127549886703 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030525 chrX:47030517 synonymous SNV . 0 13 hm5C_associated_SNPs_16148 0 0 0 0 2 RBM10 chrX:47030509 3'AG 47030509 Downstream 9bp
chr1 145507691 145507691 1 + G A BLCA 145507671 + 145507651 145507691 41 CTCGATCGAAGGCGAGATGGCGGACGTGCTAGATCTTCACG CTCGATCGAAGGCGAGATGGCGGACGTGCTAGATCTTCACA < 41bp 1 0.256189682008507 1 0.236435443162918 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RBM8A ENSG00000131795 CDS Human other chr1:145507671 chr1:145507691 nonsynonymous SNV . 0 41 hm5C_associated_SNPs_16155 0 0 1 0 1 RBM8A chr1:145507733 5'GT 145507733 Upstream 43bp
chr11 34129870 34129870 1 + G T BLCA 34129866 + 34129846 34129886 41 TCTTTGTTGTAGTTGGGGATCGAGGAAAAGATCAGGTATGG TCTTTGTTGTAGTTGGGGATCGAGTAAAAGATCAGGTATGG < 41bp 1 0.443488398200033 1 0.659066081047058 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129866 chr11:34129870 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_16156 0 0 1 0 1 NAT10 chr11:34129880 5'GT 34129880 Upstream 11bp
chr7 2613111 2613111 1 + G T BLCA 2613101 + 2613081 2613121 41 GAAAAAGAAGATATGTATGACGAGATTATTGAGTTAAAGAA GAAAAAGAAGATATGTATGACGAGATTATTTAGTTAAAGAA < 41bp 1 0.451485693487053 1 0.636902093887329 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IQCE ENSG00000106012 CDS Human protein_coding chr7:2613101 chr7:2613111 stopgain 0.998 1 31 hm5C_associated_SNPs_16157 0 0 1 0 2 IQCE chr7:2613052 3'AG 2613052 Downstream 60bp
chr7 2613111 2613111 1 + G T BLCA 2613101 + 2613081 2613121 41 GAAAAAGAAGATATGTATGACGAGATTATTGAGTTAAAGAA GAAAAAGAAGATATGTATGACGAGATTATTTAGTTAAAGAA < 41bp 1 0.451485693487053 1 0.636902093887329 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IQCE ENSG00000106012 CDS Human protein_coding chr7:2613101 chr7:2613111 stopgain 0.998 1 31 hm5C_associated_SNPs_16157 0 0 1 0 2 IQCE chr7:2613122 5'GT 2613122 Upstream 12bp
chr10 71146172 71146172 1 + G C BLCA 71146158 + 71146138 71146178 41 AGTCACCTTACTAAGGGATGCGATAAAAAGGAGAGAGGTAA AGTCACCTTACTAAGGGATGCGATAAAAAGGAGACAGGTAA < 41bp 1 0.195353366986867 1 0.337099730968475 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HK1 ENSG00000156515 CDS Human protein_coding chr10:71146158 chr10:71146172 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_16158 0 0 1 0 2 HK1 chr10:71146079 3'AG 71146079 Downstream 94bp
chr10 71146172 71146172 1 + G C BLCA 71146158 + 71146138 71146178 41 AGTCACCTTACTAAGGGATGCGATAAAAAGGAGAGAGGTAA AGTCACCTTACTAAGGGATGCGATAAAAAGGAGACAGGTAA < 41bp 1 0.195353366986867 1 0.337099730968475 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HK1 ENSG00000156515 CDS Human protein_coding chr10:71146158 chr10:71146172 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_16158 0 0 1 0 2 HK1 chr10:71146174 5'GT 71146174 Upstream 3bp
chr16 57786699 57786699 1 + C G BLCA 57786697 + 57786677 57786717 41 TCGCCTGGCCCAGGAGCGTCCTCTTCAACCCAGACGGCTGC TCGCCTGGCCCAGGAGCGTCCTGTTCAACCCAGACGGCTGC < 41bp 1 0.233615728639913 1 0.129481583833694 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57786697 chr16:57786699 synonymous SNV . 0 23 hm5C_associated_SNPs_16160 0 0 0 0 1 KATNB1 chr16:57786690 3'AG 57786690 Downstream 10bp
chr16 57786699 57786699 1 + C G BLCA 57786702 + 57786682 57786722 41 TGGCCCAGGAGCGTCCTCTTCAACCCAGACGGCTGCTGCCT TGGCCCAGGAGCGTCCTGTTCAACCCAGACGGCTGCTGCCT < 41bp 1 0.412185237353172 1 0.155111819505692 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57786702 chr16:57786699 synonymous SNV . 0 18 hm5C_associated_SNPs_16161 0 0 0 0 1 KATNB1 chr16:57786690 3'AG 57786690 Downstream 10bp
chr1 21900165 21900165 1 + C G BLCA 21900169 + 21900149 21900189 41 CCTCCTCAGGTCTCTTCGAGCCAGGGGACATGCAGTACGAG CCTCCTCAGGTCTCTTGGAGCCAGGGGACATGCAGTACGAG < 41bp 1 0.40256589586372 1 0.844979882240295 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALPL ENSG00000162551 CDS Human protein_coding chr1:21900169 chr1:21900165 nonsynonymous SNV 0.976 5 17 hm5C_associated_SNPs_16162 0 0 0 0 1 ALPL chr1:21900158 3'AG 21900158 Downstream 8bp
chr1 21900165 21900165 1 + C G BLCA 21900170 + 21900150 21900190 41 CTCCTCAGGTCTCTTCGAGCCAGGGGACATGCAGTACGAGC CTCCTCAGGTCTCTTGGAGCCAGGGGACATGCAGTACGAGC < 41bp 1 0.7944026509644 1 0.911090850830078 experiment 0.4111946980712 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALPL ENSG00000162551 CDS Human protein_coding chr1:21900170 chr1:21900165 nonsynonymous SNV 0.976 5 16 hm5C_associated_SNPs_16163 0 0 0 0 1 ALPL chr1:21900158 3'AG 21900158 Downstream 8bp
chr16 70562835 70562835 1 + G T BLCA 70562823 + 70562803 70562843 41 CCCGTGGGAAGATCTTGGAGCTGCTTCGCCCAGACCCCAAC CCCGTGGGAAGATCTTGGAGCTGCTTCGCCCATACCCCAAC < 41bp 1 0.315995014379113 1 0.105692833662033 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70562823 chr16:70562835 nonsynonymous SNV 0.998 4 33 hm5C_associated_SNPs_16164 0 0 1 0 1 SF3B3 chr16:70562776 3'AG 70562776 Downstream 60bp
chr6 47576971 47576971 1 + C G BLCA 47576982 + 47576962 47577002 41 AAAAAAATTCCCTGGATGAACTTAGAGCCCAGATTATTGAA AAAAAAATTGCCTGGATGAACTTAGAGCCCAGATTATTGAA < 41bp 1 0.254212650729324 1 0.0883462429046631 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47576982 chr6:47576971 nonsynonymous SNV 0.966 1 10 hm5C_associated_SNPs_16168 0 0 1 0 1 CD2AP chr6:47577040 5'GT 47577040 Upstream 70bp
chr22 31266642 31266642 1 + C T BLCA 31266632 + 31266612 31266652 41 GAAGGTGGTGAATGAGCGGGCCACCCTCTTCCGCATCACAT GAAGGTGGTGAATGAGCGGGCCACCCTCTTTCGCATCACAT < 41bp 1 0.036163472034769 1 0.0935497283935547 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OSBP2 ENSG00000184792 CDS Human protein_coding chr22:31266632 chr22:31266642 synonymous SNV . 0 31 hm5C_associated_SNPs_16173 0 0 0 0 1 OSBP2 chr22:31266669 5'GT 31266669 Upstream 28bp
chr19 39219769 39219769 1 + C T BLCA 39219773 + 39219753 39219793 41 GACCAGGTCATCGCTTCCTTCAAGGTCTTAGCAGGGGACAA GACCAGGTCATCGCTTTCTTCAAGGTCTTAGCAGGGGACAA < 41bp 1 0.720684720767423 1 0.935474634170532 experiment 0.558630558465155 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39219773 chr19:39219769 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_16174 0 0 1 0 1 ACTN4 chr19:39219794 5'GT 39219794 Upstream 26bp
chr3 52325046 52325046 1 + G A BLCA 52325038 + 52325018 52325058 41 GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG GGGTGCGGAGGACAACCTCCCGGACCGCAATGCGCTGCGGG < 41bp 1 0.559232745302123 1 0.771599769592285 experiment 0.881534509395755 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52325038 chr3:52325046 nonsynonymous SNV 0.020 2 29 hm5C_associated_SNPs_16175 0 0 1 0 2 GLYCTK chr3:52324976 3'AG 52324976 Downstream 71bp
chr3 52325046 52325046 1 + G A BLCA 52325038 + 52325018 52325058 41 GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG GGGTGCGGAGGACAACCTCCCGGACCGCAATGCGCTGCGGG < 41bp 1 0.559232745302123 1 0.771599769592285 experiment 0.881534509395755 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52325038 chr3:52325046 nonsynonymous SNV 0.020 2 29 hm5C_associated_SNPs_16175 0 0 1 0 2 GLYCTK chr3:52325127 5'GT 52325127 Upstream 82bp
chr11 118267074 118267074 1 + G C BLCA 118267077 + 118267057 118267097 41 CCCCTCACCATGGACCAGATCCGGCCAAACACAGAACTAAA CCCCTCACCATGGACCACATCCGGCCAAACACAGAACTAAA < 41bp 1 0.227895985859107 1 0.382634222507477 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UBE4A ENSG00000110344 CDS Human protein_coding chr11:118267077 chr11:118267074 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_16176 0 0 1 0 1 UBE4A chr11:118267029 3'AG 118267029 Downstream 46bp
chr22 38352817 38352817 1 + G A BLCA 38352823 + 38352803 38352843 41 ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCC ATGTGGAGGAGGATAAAGGGCTAGATGACTTGGAGAATGCC < 41bp 1 0.742136155034606 1 0.433974623680115 experiment 0.515727689930789 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352823 chr22:38352817 nonsynonymous SNV 0.998 1 15 hm5C_associated_SNPs_16177 0 0 1 0 3 POLR2F chr22:38352780 3'AG 38352780 Downstream 38bp
chr22 38352817 38352817 1 + G A BLCA 38352823 + 38352803 38352843 41 ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCC ATGTGGAGGAGGATAAAGGGCTAGATGACTTGGAGAATGCC < 41bp 1 0.742136155034606 1 0.433974623680115 experiment 0.515727689930789 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352823 chr22:38352817 nonsynonymous SNV 0.998 1 15 hm5C_associated_SNPs_16177 0 0 1 0 3 POLR2F chr22:38352849 5'GT 38352849 Upstream 33bp
chr22 38352817 38352817 1 + G A BLCA 38352823 + 38352803 38352843 41 ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCC ATGTGGAGGAGGATAAAGGGCTAGATGACTTGGAGAATGCC < 41bp 1 0.742136155034606 1 0.433974623680115 experiment 0.515727689930789 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352823 chr22:38352817 nonsynonymous SNV 0.998 1 15 hm5C_associated_SNPs_16177 0 0 1 0 3 POLR2F chr22:38352908 5'GT 38352908 Upstream 92bp
chr22 38352817 38352817 1 + G A BLCA 38352831 + 38352811 38352851 41 GAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT GAGGATAAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT < 41bp 1 0.533975321062728 1 0.16255784034729 experiment 0.932049357874545 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352831 chr22:38352817 nonsynonymous SNV 0.998 1 7 hm5C_associated_SNPs_16178 0 0 1 0 3 POLR2F chr22:38352780 3'AG 38352780 Downstream 38bp
chr22 38352817 38352817 1 + G A BLCA 38352831 + 38352811 38352851 41 GAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT GAGGATAAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT < 41bp 1 0.533975321062728 1 0.16255784034729 experiment 0.932049357874545 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352831 chr22:38352817 nonsynonymous SNV 0.998 1 7 hm5C_associated_SNPs_16178 0 0 1 0 3 POLR2F chr22:38352849 5'GT 38352849 Upstream 33bp
chr22 38352817 38352817 1 + G A BLCA 38352831 + 38352811 38352851 41 GAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT GAGGATAAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT < 41bp 1 0.533975321062728 1 0.16255784034729 experiment 0.932049357874545 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352831 chr22:38352817 nonsynonymous SNV 0.998 1 7 hm5C_associated_SNPs_16178 0 0 1 0 3 POLR2F chr22:38352908 5'GT 38352908 Upstream 92bp
chr17 4905368 4905368 1 + C G BLCA 4905366 + 4905346 4905386 41 CCCTCCAGCTCTGTGAGGACCTCTTCTCTCGCGTTAGTGAG CCCTCCAGCTCTGTGAGGACCTGTTCTCTCGCGTTAGTGAG < 41bp 1 0.110617687435309 1 0.0479413866996765 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905366 chr17:4905368 synonymous SNV . 0 23 hm5C_associated_SNPs_16180 0 0 1 0 2 KIF1C chr17:4905354 3'AG 4905354 Downstream 15bp
chr17 4905368 4905368 1 + C G BLCA 4905366 + 4905346 4905386 41 CCCTCCAGCTCTGTGAGGACCTCTTCTCTCGCGTTAGTGAG CCCTCCAGCTCTGTGAGGACCTGTTCTCTCGCGTTAGTGAG < 41bp 1 0.110617687435309 1 0.0479413866996765 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905366 chr17:4905368 synonymous SNV . 0 23 hm5C_associated_SNPs_16180 0 0 1 0 2 KIF1C chr17:4905419 5'GT 4905419 Upstream 52bp
chr6 155154524 155154524 1 + A G BLCA 155154525 + 155154505 155154545 41 AAGCACAGAAACTGAGGGGACATAATCATCACTCAGTAGGT AAGCACAGAAACTGAGGGGGCATAATCATCACTCAGTAGGT < 41bp 1 0.178220531230103 1 0.160979986190796 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SCAF8 ENSG00000213079 CDS Human other chr6:155154525 chr6:155154524 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_16181 0 0 1 0 1 SCAF8 chr6:155154543 5'GT 155154543 Upstream 20bp
chr17 37360818 37360818 1 + C G BLCA 37360801 + 37360781 37360821 41 CCAGGCTGAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCA CCAGGCTGAGGCCCGCAGGTCTAAGACCAAGGAAGCAGGCA < 41bp 1 0.460592299838554 1 0.282685548067093 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360801 chr17:37360818 nonsynonymous SNV 0.996 2 38 hm5C_associated_SNPs_16183 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 41bp
chr17 37360818 37360818 1 + C G BLCA 37360807 + 37360787 37360827 41 TGAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCAAGCGCC TGAGGCCCGCAGGTCTAAGACCAAGGAAGCAGGCAAGCGCC < 41bp 1 0.550193005515926 1 0.44643759727478 experiment 0.899613988968148 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360807 chr17:37360818 nonsynonymous SNV 0.996 2 32 hm5C_associated_SNPs_16184 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 41bp
chr17 37360818 37360818 1 + C G BLCA 37360808 + 37360788 37360828 41 GAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCAAGCGCCG GAGGCCCGCAGGTCTAAGACCAAGGAAGCAGGCAAGCGCCG < 41bp 1 0.756973523333469 1 0.824227273464203 experiment 0.486052953333062 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360808 chr17:37360818 nonsynonymous SNV 0.996 2 31 hm5C_associated_SNPs_16185 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 41bp
chr17 37360818 37360818 1 + C G BLCA 37360816 + 37360796 37360836 41 CAGGTCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGC CAGGTCTAAGACCAAGGAAGCAGGCAAGCGCCGTGAAGAGC < 41bp 1 0.503564287156152 1 0.691018462181091 experiment 0.992871425687697 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360816 chr17:37360818 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_16186 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 41bp
chr17 37360818 37360818 1 + C G BLCA 37360820 + 37360800 37360840 41 TCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGCGCCT TCTAAGACCAAGGAAGCAGGCAAGCGCCGTGAAGAGCGCCT < 41bp 1 0.605153054242264 1 0.695806801319122 experiment 0.789693891515473 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360820 chr17:37360818 nonsynonymous SNV 0.996 2 19 hm5C_associated_SNPs_16187 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 41bp
chr2 3628398 3628398 1 + G A BLCA 3628408 + 3628388 3628428 41 CTTGTAGGTTGAAACTTTTTCTGGTGTCTATAAGAAGCTCA CTTGTAGGTTAAAACTTTTTCTGGTGTCTATAAGAAGCTCA < 41bp 1 0.702819094312326 1 0.146905452013016 experiment 0.594361811375348 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS7 ENSG00000171863 CDS Human protein_coding chr2:3628408 chr2:3628398 nonsynonymous SNV 0.997 2 11 hm5C_associated_SNPs_16188 0 0 1 0 1 RPS7 chr2:3628395 3'AG 3628395 Downstream 4bp
chr12 113730863 113730863 1 + G C BLCA 113730854 + 113730834 113730874 41 GTCACCAGGCTGCTGGAGACCCTCTCCCAGATGGAGAGATA GTCACCAGGCTGCTGGAGACCCTCTCCCACATGGAGAGATA < 41bp 1 0.0971936389780022 1 0.0482022166252136 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113730854 chr12:113730863 nonsynonymous SNV 0.998 0 30 hm5C_associated_SNPs_16189 0 0 1 0 1 TPCN1 chr12:113730878 5'GT 113730878 Upstream 16bp
chr5 159437854 159437854 1 + G A BLCA 159437849 + 159437829 159437869 41 AGAACTGGAAAAAAACATGTCGGATGAAGAGAAACAGGTAA AGAACTGGAAAAAAACATGTCGGATAAAGAGAAACAGGTAA < 41bp 1 0.421437457085392 1 0.442351311445236 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TTC1 ENSG00000113312 CDS Human protein_coding chr5:159437849 chr5:159437854 nonsynonymous SNV 0.995 3 26 hm5C_associated_SNPs_16190 0 0 1 0 1 TTC1 chr5:159437865 5'GT 159437865 Upstream 12bp
chr7 135272735 135272735 1 + C T BLCA 135272723 + 135272703 135272743 41 ATCTAGGGGTGGCTCATCAGCGGCCCCCTCAACGCCAGGTG ATCTAGGGGTGGCTCATCAGCGGCCCCCTCAATGCCAGGTG < 41bp 1 0.465903990115394 1 0.468891113996506 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135272723 chr7:135272735 nonsynonymous SNV 0.999 3 33 hm5C_associated_SNPs_16191 0 0 1 0 1 NUP205 chr7:135272740 5'GT 135272740 Upstream 6bp
chrX 69699075 69699075 1 + G A BLCA 69699058 + 69699038 69699078 41 GAACAAATGATGAACAGCAGCATGAGCTCTGGGTCTGGGTC GAACAAATGATGAACAGCAGCATGAGCTCTGGGTCTGAGTC < 41bp 1 0.414356342725754 1 0.175692737102509 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DLG3 ENSG00000082458 CDS Human protein_coding chrX:69699058 chrX:69699075 nonsynonymous SNV 0.999 3 38 hm5C_associated_SNPs_16192 0 0 1 0 2 DLG3 chrX:69699000 3'AG 69699000 Downstream 76bp
chrX 69699075 69699075 1 + G A BLCA 69699058 + 69699038 69699078 41 GAACAAATGATGAACAGCAGCATGAGCTCTGGGTCTGGGTC GAACAAATGATGAACAGCAGCATGAGCTCTGGGTCTGAGTC < 41bp 1 0.414356342725754 1 0.175692737102509 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DLG3 ENSG00000082458 CDS Human protein_coding chrX:69699058 chrX:69699075 nonsynonymous SNV 0.999 3 38 hm5C_associated_SNPs_16192 0 0 1 0 2 DLG3 chrX:69699114 5'GT 69699114 Upstream 40bp
chr7 114302141 114302141 1 + A T BLCA 114302124 + 114302104 114302144 41 CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCTTAGCC CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCTTTGCC < 41bp 1 0.197647455532781 1 0.19581264257431 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXP2 ENSG00000128573 CDS Human protein_coding chr7:114302124 chr7:114302141 nonsynonymous SNV 0.998 5 38 hm5C_associated_SNPs_16195 0 0 1 4 1 FOXP2 chr7:114302120 3'AG 114302120 Downstream 22bp
chr12 52314580 52314580 1 + G A BLCA 52314578 + 52314558 52314598 41 GCTCAGATGATGCGGGAGTGCTGGTACCCAAACCCCTCTGC GCTCAGATGATGCGGGAGTGCTAGTACCCAAACCCCTCTGC < 41bp 1 0.725238881626334 1 0.199564963579178 experiment 0.549522236747332 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52314578 chr12:52314580 stopgain 1.000 0 23 hm5C_associated_SNPs_16197 0 0 0 0 1 ACVRL1 chr12:52314543 3'AG 52314543 Downstream 38bp
chr16 1818252 1818252 1 + C T BLCA 1818253 + 1818233 1818273 41 CCCGTCCCGGGGGCATCATCCACGTGTATGGCGATGACAGC CCCGTCCCGGGGGCATCATTCACGTGTATGGCGATGACAGC < 41bp 1 0.597430248714459 1 0.708102107048035 experiment 0.805139502571082 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1818253 chr16:1818252 synonymous SNV . 0 20 hm5C_associated_SNPs_16198 0 0 1 0 1 MAPK8IP3 chr16:1818200 3'AG 1818200 Downstream 53bp
chr19 36278139 36278139 1 + C T BLCA 36278132 + 36278112 36278152 41 TCCTGCGCCCTGGGGGTGCCCCACCCCCGCCCCCTAAGAAC TCCTGCGCCCTGGGGGTGCCCCACCCCTGCCCCCTAAGAAC < 41bp 1 0.163535438782623 1 0.348897755146027 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36278132 chr19:36278139 nonsynonymous SNV 0.621 2 28 hm5C_associated_SNPs_16199 0 0 0 0 1 ARHGAP33 chr19:36278070 3'AG 36278070 Downstream 70bp
chr5 65118647 65118647 1 + G A BLCA 65118652 + 65118632 65118672 41 AATCCTGAAACCTGGGGGATCTCTGGACGGCATGGACATGC AATCCTGAAACCTGGAGGATCTCTGGACGGCATGGACATGC < 41bp 1 0.382076802882915 1 0.161321133375168 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NLN ENSG00000123213 CDS Human protein_coding chr5:65118652 chr5:65118647 synonymous SNV . 0 16 hm5C_associated_SNPs_16200 0 0 1 0 1 NLN chr5:65118609 3'AG 65118609 Downstream 39bp
chr1 984698 984698 1 + C T BLCA 984697 + 984677 984717 41 TGGCACCGCCTGGAGCTGTCCCGGCACTGGCGCCGGGGCAC TGGCACCGCCTGGAGCTGTCCTGGCACTGGCGCCGGGGCAC < 41bp 1 0.491297624190005 1 0.603120446205139 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984697 chr1:984698 nonsynonymous SNV 0.140 4 22 hm5C_associated_SNPs_16201 0 0 1 0 1 AGRN chr1:984616 3'AG 984616 Downstream 83bp
chr1 984698 984698 1 + C T BLCA 984701 + 984681 984721 41 ACCGCCTGGAGCTGTCCCGGCACTGGCGCCGGGGCACCCTC ACCGCCTGGAGCTGTCCTGGCACTGGCGCCGGGGCACCCTC < 41bp 1 0.342983562764325 1 0.558914303779602 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984701 chr1:984698 nonsynonymous SNV 0.140 4 18 hm5C_associated_SNPs_16202 0 0 1 0 1 AGRN chr1:984616 3'AG 984616 Downstream 83bp
chr1 984698 984698 1 + C T BLCA 984709 + 984689 984729 41 GAGCTGTCCCGGCACTGGCGCCGGGGCACCCTCTCGGTGGA GAGCTGTCCTGGCACTGGCGCCGGGGCACCCTCTCGGTGGA < 41bp 1 0.409825114005496 1 0.754111766815186 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984709 chr1:984698 nonsynonymous SNV 0.140 4 10 hm5C_associated_SNPs_16203 0 0 1 0 1 AGRN chr1:984616 3'AG 984616 Downstream 83bp
chr1 984698 984698 1 + C T BLCA 984710 + 984690 984730 41 AGCTGTCCCGGCACTGGCGCCGGGGCACCCTCTCGGTGGAT AGCTGTCCTGGCACTGGCGCCGGGGCACCCTCTCGGTGGAT < 41bp 1 0.532487674919422 1 0.840839505195618 experiment 0.935024650161157 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984710 chr1:984698 nonsynonymous SNV 0.140 4 9 hm5C_associated_SNPs_16204 0 0 1 0 1 AGRN chr1:984616 3'AG 984616 Downstream 83bp
chr7 40102457 40102457 1 + G A BLCA 40102465 + 40102445 40102485 41 TAATTACTTTATGGTACCGTCCACCTGAACTGCTACTGGGA TAATTACTTTATAGTACCGTCCACCTGAACTGCTACTGGGA < 41bp 1 0.0315762389508573 1 0.102453708648682 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:40102465 chr7:40102457 stopgain 1.000 0 13 hm5C_associated_SNPs_16205 0 0 1 0 2 CDK13 chr7:40102425 3'AG 40102425 Downstream 33bp
chr7 40102457 40102457 1 + G A BLCA 40102465 + 40102445 40102485 41 TAATTACTTTATGGTACCGTCCACCTGAACTGCTACTGGGA TAATTACTTTATAGTACCGTCCACCTGAACTGCTACTGGGA < 41bp 1 0.0315762389508573 1 0.102453708648682 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:40102465 chr7:40102457 stopgain 1.000 0 13 hm5C_associated_SNPs_16205 0 0 1 0 2 CDK13 chr7:40102526 5'GT 40102526 Upstream 70bp
chr15 41859598 41859598 1 + T C BLCA 41859602 + 41859582 41859622 41 GAAGTCCTGGCTGTTGTGGTCCCTGTGCCCCCCTTTACCTG GAAGTCCTGGCTGTTGCGGTCCCTGTGCCCCCCTTTACCTG < 41bp 1 0.211301653156452 1 0.0496354401111603 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41859602 chr15:41859598 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_16209 0 0 0 0 1 TYRO3 chr15:41859558 3'AG 41859558 Downstream 41bp
chr1 26800009 26800009 1 + G T BLCA 26800015 + 26799995 26800035 41 GATAAAGCAAAGGTGAAGGACGAAGTAAGTCATTCTCTCTT GATAAAGCAAAGGTTAAGGACGAAGTAAGTCATTCTCTCTT < 41bp 1 0.564039606370921 1 0.108158975839615 experiment 0.871920787258158 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN2 ENSG00000198830 CDS Human protein_coding chr1:26800015 chr1:26800009 synonymous SNV . 0 15 hm5C_associated_SNPs_16212 0 0 1 0 2 HMGN2 chr1:26799974 3'AG 26799974 Downstream 36bp
chr1 26800009 26800009 1 + G T BLCA 26800015 + 26799995 26800035 41 GATAAAGCAAAGGTGAAGGACGAAGTAAGTCATTCTCTCTT GATAAAGCAAAGGTTAAGGACGAAGTAAGTCATTCTCTCTT < 41bp 1 0.564039606370921 1 0.108158975839615 experiment 0.871920787258158 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN2 ENSG00000198830 CDS Human protein_coding chr1:26800015 chr1:26800009 synonymous SNV . 0 15 hm5C_associated_SNPs_16212 0 0 1 0 2 HMGN2 chr1:26800018 5'GT 26800018 Upstream 10bp
chr2 128178930 128178930 1 + G C BLCA 128178922 + 128178902 128178942 41 GATCCGCAAACGTGCCAACTCCTTCCTGGAGGAGCTCCGTC GATCCGCAAACGTGCCAACTCCTTCCTGCAGGAGCTCCGTC < 41bp 1 0.0557992961243031 1 0.0916672646999359 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128178922 chr2:128178930 nonsynonymous SNV 0.267 5 29 hm5C_associated_SNPs_16213 0 0 1 0 3 PROC chr2:128178859 3'AG 128178859 Downstream 72bp
chr2 128178930 128178930 1 + G C BLCA 128178922 + 128178902 128178942 41 GATCCGCAAACGTGCCAACTCCTTCCTGGAGGAGCTCCGTC GATCCGCAAACGTGCCAACTCCTTCCTGCAGGAGCTCCGTC < 41bp 1 0.0557992961243031 1 0.0916672646999359 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128178922 chr2:128178930 nonsynonymous SNV 0.267 5 29 hm5C_associated_SNPs_16213 0 0 1 0 3 PROC chr2:128178894 3'AG 128178894 Downstream 37bp
chr2 128178930 128178930 1 + G C BLCA 128178922 + 128178902 128178942 41 GATCCGCAAACGTGCCAACTCCTTCCTGGAGGAGCTCCGTC GATCCGCAAACGTGCCAACTCCTTCCTGCAGGAGCTCCGTC < 41bp 1 0.0557992961243031 1 0.0916672646999359 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128178922 chr2:128178930 nonsynonymous SNV 0.267 5 29 hm5C_associated_SNPs_16213 0 0 1 0 3 PROC chr2:128179025 5'GT 128179025 Upstream 96bp
chr3 9976246 9976246 1 + C T BLCA 9976249 + 9976229 9976269 41 AGTCTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGC AGTCTTCTCCCCCGCCTTAGCCCCATCCGTGTCATACCTGC < 41bp 1 0.613098738815081 1 0.342501819133759 experiment 0.773802522369837 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976249 chr3:9976246 stopgain 0.265 0 18 hm5C_associated_SNPs_16214 0 0 1 0 1 CRELD1 chr3:9976296 5'GT 9976296 Upstream 51bp
chr3 9976246 9976246 1 + C T BLCA 9976251 + 9976231 9976271 41 TCTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGCCG TCTTCTCCCCCGCCTTAGCCCCATCCGTGTCATACCTGCCG < 41bp 1 0.0387420297598317 1 0.0398187935352325 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976251 chr3:9976246 stopgain 0.265 0 16 hm5C_associated_SNPs_16215 0 0 1 0 1 CRELD1 chr3:9976296 5'GT 9976296 Upstream 51bp
chr3 9976246 9976246 1 + C T BLCA 9976252 + 9976232 9976272 41 CTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGCCGG CTTCTCCCCCGCCTTAGCCCCATCCGTGTCATACCTGCCGG < 41bp 1 0.191493595685269 1 0.25887656211853 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976252 chr3:9976246 stopgain 0.265 0 15 hm5C_associated_SNPs_16216 0 0 1 0 1 CRELD1 chr3:9976296 5'GT 9976296 Upstream 51bp
chr19 50335588 50335588 1 + G C BLCA 50335577 + 50335557 50335597 41 TCCCGCAGACCACCCTGGGCCCTTTGTTCCGGAACTCAAGG TCCCGCAGACCACCCTGGGCCCTTTGTTCCGCAACTCAAGG < 41bp 1 0.0143708883080858 1 0.0347674489021301 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50335577 chr19:50335588 synonymous SNV . 0 32 hm5C_associated_SNPs_16217 0 0 1 0 2 MED25 chr19:50335565 3'AG 50335565 Downstream 24bp
chr19 50335588 50335588 1 + G C BLCA 50335577 + 50335557 50335597 41 TCCCGCAGACCACCCTGGGCCCTTTGTTCCGGAACTCAAGG TCCCGCAGACCACCCTGGGCCCTTTGTTCCGCAACTCAAGG < 41bp 1 0.0143708883080858 1 0.0347674489021301 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50335577 chr19:50335588 synonymous SNV . 0 32 hm5C_associated_SNPs_16217 0 0 1 0 2 MED25 chr19:50335672 5'GT 50335672 Upstream 85bp
chr11 33079495 33079495 1 + A G BLCA 33079509 + 33079489 33079529 41 GGTCATACTAGACTGAGAAACCAGATAACAGAAGTCTTGGA GGTCATGCTAGACTGAGAAACCAGATAACAGAAGTCTTGGA < 41bp 1 0.54574252699879 1 0.538648128509521 experiment 0.90851494600242 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33079509 chr11:33079495 nonsynonymous SNV 0.993 1 7 hm5C_associated_SNPs_16218 0 0 1 0 1 TCP11L1 chr11:33079465 3'AG 33079465 Downstream 31bp
chr6 133138189 133138189 1 + G T BLCA 133138207 + 133138187 133138227 41 GTGTAGTAGTTAAGGTAAGTCACCGTTTATTCTAGGGATGA GTTTAGTAGTTAAGGTAAGTCACCGTTTATTCTAGGGATGA < 41bp 1 0.779037957325195 1 0.284072160720825 experiment 0.441924085349609 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPS12 ENSG00000112306 CDS Human protein_coding chr6:133138207 chr6:133138189 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_16219 0 0 1 0 2 RPS12 chr6:133138099 3'AG 133138099 Downstream 91bp
chr6 133138189 133138189 1 + G T BLCA 133138207 + 133138187 133138227 41 GTGTAGTAGTTAAGGTAAGTCACCGTTTATTCTAGGGATGA GTTTAGTAGTTAAGGTAAGTCACCGTTTATTCTAGGGATGA < 41bp 1 0.779037957325195 1 0.284072160720825 experiment 0.441924085349609 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPS12 ENSG00000112306 CDS Human protein_coding chr6:133138207 chr6:133138189 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_16219 0 0 1 0 2 RPS12 chr6:133138200 5'GT 133138200 Upstream 12bp
chr7 99627511 99627511 1 + C T BLCA 99627493 + 99627473 99627513 41 TCCTCCCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCC TCCTCCCCCAGCTCTTCCTGCTGCCCACATTCCTGCACTCC < 41bp 1 0.249700438629273 1 0.0784173905849457 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627493 chr7:99627511 nonsynonymous SNV 0.354 0 39 hm5C_associated_SNPs_16220 0 0 1 0 2 ZKSCAN1 chr7:99627484 3'AG 99627484 Downstream 28bp
chr7 99627511 99627511 1 + C T BLCA 99627493 + 99627473 99627513 41 TCCTCCCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCC TCCTCCCCCAGCTCTTCCTGCTGCCCACATTCCTGCACTCC < 41bp 1 0.249700438629273 1 0.0784173905849457 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627493 chr7:99627511 nonsynonymous SNV 0.354 0 39 hm5C_associated_SNPs_16220 0 0 1 0 2 ZKSCAN1 chr7:99627575 5'GT 99627575 Upstream 65bp
chr7 99627511 99627511 1 + C T BLCA 99627498 + 99627478 99627518 41 CCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCCCTCAT CCCCAGCTCTTCCTGCTGCCCACATTCCTGCACTCCCTCAT < 41bp 1 0.515057732847025 1 0.0711269676685333 experiment 0.969884534305949 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627498 chr7:99627511 nonsynonymous SNV 0.354 0 34 hm5C_associated_SNPs_16221 0 0 1 0 2 ZKSCAN1 chr7:99627484 3'AG 99627484 Downstream 28bp
chr7 99627511 99627511 1 + C T BLCA 99627498 + 99627478 99627518 41 CCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCCCTCAT CCCCAGCTCTTCCTGCTGCCCACATTCCTGCACTCCCTCAT < 41bp 1 0.515057732847025 1 0.0711269676685333 experiment 0.969884534305949 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627498 chr7:99627511 nonsynonymous SNV 0.354 0 34 hm5C_associated_SNPs_16221 0 0 1 0 2 ZKSCAN1 chr7:99627575 5'GT 99627575 Upstream 65bp
chr15 73007723 73007723 1 + C T BLCA 73007740 + 73007720 73007760 41 CCTCAAGCAGGTGGCCAGATCTTTGTGAGTATTGGCAACCT CCTTAAGCAGGTGGCCAGATCTTTGTGAGTATTGGCAACCT < 41bp 1 0.42114219247319 1 0.20898973941803 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BBS4 ENSG00000140463 CDS Human protein_coding chr15:73007740 chr15:73007723 synonymous SNV . 0 4 hm5C_associated_SNPs_16222 0 0 1 0 2 BBS4 chr15:73007632 3'AG 73007632 Downstream 92bp
chr15 73007723 73007723 1 + C T BLCA 73007740 + 73007720 73007760 41 CCTCAAGCAGGTGGCCAGATCTTTGTGAGTATTGGCAACCT CCTTAAGCAGGTGGCCAGATCTTTGTGAGTATTGGCAACCT < 41bp 1 0.42114219247319 1 0.20898973941803 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BBS4 ENSG00000140463 CDS Human protein_coding chr15:73007740 chr15:73007723 synonymous SNV . 0 4 hm5C_associated_SNPs_16222 0 0 1 0 2 BBS4 chr15:73007743 5'GT 73007743 Upstream 21bp
chr11 47436657 47436657 1 + C G BLCA 47436655 + 47436635 47436675 41 CCTTCACCTCTGGCGGCTTTCTCTACATCGCCTTGGTGAAC CCTTCACCTCTGGCGGCTTTCTGTACATCGCCTTGGTGAAC < 41bp 1 0.777591668505099 1 0.841984391212463 experiment 0.444816662989803 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC39A13 ENSG00000165915 CDS Human protein_coding chr11:47436655 chr11:47436657 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_16223 0 0 1 0 3 SLC39A13 chr11:47436590 3'AG 47436590 Downstream 68bp
chr11 47436657 47436657 1 + C G BLCA 47436655 + 47436635 47436675 41 CCTTCACCTCTGGCGGCTTTCTCTACATCGCCTTGGTGAAC CCTTCACCTCTGGCGGCTTTCTGTACATCGCCTTGGTGAAC < 41bp 1 0.777591668505099 1 0.841984391212463 experiment 0.444816662989803 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC39A13 ENSG00000165915 CDS Human protein_coding chr11:47436655 chr11:47436657 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_16223 0 0 1 0 3 SLC39A13 chr11:47436611 3'AG 47436611 Downstream 47bp
chr11 47436657 47436657 1 + C G BLCA 47436655 + 47436635 47436675 41 CCTTCACCTCTGGCGGCTTTCTCTACATCGCCTTGGTGAAC CCTTCACCTCTGGCGGCTTTCTGTACATCGCCTTGGTGAAC < 41bp 1 0.777591668505099 1 0.841984391212463 experiment 0.444816662989803 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC39A13 ENSG00000165915 CDS Human protein_coding chr11:47436655 chr11:47436657 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_16223 0 0 1 0 3 SLC39A13 chr11:47436710 5'GT 47436710 Upstream 54bp
chr16 2011284 2011284 1 + G A BLCA 2011268 + 2011248 2011288 41 CATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGG CATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAAAGGG < 41bp 1 0.591059601241769 1 0.290755212306976 experiment 0.817880797516462 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011268 chr16:2011284 synonymous SNV . 0 37 hm5C_associated_SNPs_16224 0 0 1 0 1 NDUFB10 chr16:2011292 5'GT 2011292 Upstream 9bp
chr16 2011284 2011284 1 + G A BLCA 2011269 + 2011249 2011289 41 ATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGGA ATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAAAGGGA < 41bp 1 0.589224759587444 1 0.404100596904755 experiment 0.821550480825113 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011269 chr16:2011284 synonymous SNV . 0 36 hm5C_associated_SNPs_16225 0 0 1 0 1 NDUFB10 chr16:2011292 5'GT 2011292 Upstream 9bp
chr16 2011284 2011284 1 + G A BLCA 2011276 + 2011256 2011296 41 GCATGTATGAAGCCGAAATGCAGTGGAAGAGGGACTAGTAC GCATGTATGAAGCCGAAATGCAGTGGAAAAGGGACTAGTAC < 41bp 1 0.716446201380669 1 0.683938920497894 experiment 0.567107597238661 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011276 chr16:2011284 synonymous SNV . 0 29 hm5C_associated_SNPs_16226 0 0 1 0 1 NDUFB10 chr16:2011292 5'GT 2011292 Upstream 9bp
chr1 198231746 198231746 1 + C G BLCA 198231736 + 198231716 198231756 41 AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG AATGGATGCCAAAGCACGTGCTGATTGCATGAAAGAAATAG < 41bp 1 0.164089254744681 1 0.146408259868622 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231736 chr1:198231746 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_16227 0 0 0 0 2 NEK7 chr1:198231705 3'AG 198231705 Downstream 42bp
chr1 198231746 198231746 1 + C G BLCA 198231736 + 198231716 198231756 41 AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG AATGGATGCCAAAGCACGTGCTGATTGCATGAAAGAAATAG < 41bp 1 0.164089254744681 1 0.146408259868622 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231736 chr1:198231746 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_16227 0 0 0 0 2 NEK7 chr1:198231767 5'GT 198231767 Upstream 22bp
chr1 198231746 198231746 1 + C G BLCA 198231762 + 198231742 198231782 41 GCATCAAAGAAATAGATCTTCTTAAGGTAATTAATGAACTG GCATGAAAGAAATAGATCTTCTTAAGGTAATTAATGAACTG < 41bp 1 0.501391004035225 1 0.157153874635696 experiment 0.997217991929549 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231762 chr1:198231746 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_16228 0 0 0 0 2 NEK7 chr1:198231705 3'AG 198231705 Downstream 42bp
chr1 198231746 198231746 1 + C G BLCA 198231762 + 198231742 198231782 41 GCATCAAAGAAATAGATCTTCTTAAGGTAATTAATGAACTG GCATGAAAGAAATAGATCTTCTTAAGGTAATTAATGAACTG < 41bp 1 0.501391004035225 1 0.157153874635696 experiment 0.997217991929549 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231762 chr1:198231746 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_16228 0 0 0 0 2 NEK7 chr1:198231767 5'GT 198231767 Upstream 22bp
chr1 207510111 207510111 1 + C G BLCA 207510119 + 207510099 207510139 41 AACTACAGAAGTCTCACCAACTTCTCAGAAAACCACCACAA AACTACAGAAGTGTCACCAACTTCTCAGAAAACCACCACAA < 41bp 1 0.365391173452412 1 0.805492043495178 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CD55 ENSG00000196352 CDS Human protein_coding chr1:207510119 chr1:207510111 synonymous SNV . 0 13 hm5C_associated_SNPs_16229 0 0 1 0 2 CD55 chr1:207510038 3'AG 207510038 Downstream 74bp
chr1 207510111 207510111 1 + C G BLCA 207510119 + 207510099 207510139 41 AACTACAGAAGTCTCACCAACTTCTCAGAAAACCACCACAA AACTACAGAAGTGTCACCAACTTCTCAGAAAACCACCACAA < 41bp 1 0.365391173452412 1 0.805492043495178 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CD55 ENSG00000196352 CDS Human protein_coding chr1:207510119 chr1:207510111 synonymous SNV . 0 13 hm5C_associated_SNPs_16229 0 0 1 0 2 CD55 chr1:207510163 5'GT 207510163 Upstream 53bp
chr1 45268966 45268966 1 + C G BLCA 45268980 + 45268960 45269000 41 CCCTATCAGCAGCTGCGTGACAGTCCCAGACCTGACACCCC CCCTATGAGCAGCTGCGTGACAGTCCCAGACCTGACACCCC < 41bp 1 0.228296752181604 1 0.393904715776443 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45268980 chr1:45268966 nonsynonymous SNV 0.997 0 7 hm5C_associated_SNPs_16231 0 0 1 0 1 PLK3 chr1:45268940 3'AG 45268940 Downstream 27bp
chrX 153780345 153780345 1 + C T BLCA 153780337 + 153780317 153780357 41 GGGAAGCCAGCCATGCTGCACCTGCCTTCAGAACAGGGCGC GGGAAGCCAGCCATGCTGCACCTGCCTTTAGAACAGGGCGC < 41bp 1 0.0801899539321176 1 0.11500072479248 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IKBKG ENSG00000073009 CDS Human other chrX:153780337 chrX:153780345 nonsynonymous SNV 0.590 2 29 hm5C_associated_SNPs_16233 0 0 1 0 1 IKBKG chrX:153780404 5'GT 153780404 Upstream 60bp
chr8 87560571 87560571 1 + C G BLCA 87560561 + 87560541 87560581 41 TTCACTGGCTCCAATGGTGACCCAAGGTCTCCAGACTCCCT TTCACTGGCTCCAATGGTGACCCAAGGTCTGCAGACTCCCT < 41bp 1 0.500439411706213 1 0.0773419439792633 experiment 0.999121176587574 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE3 ENSG00000085719 CDS Human protein_coding chr8:87560561 chr8:87560571 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_16234 0 0 1 0 2 CPNE3 chr8:87560529 3'AG 87560529 Downstream 43bp
chr8 87560571 87560571 1 + C G BLCA 87560561 + 87560541 87560581 41 TTCACTGGCTCCAATGGTGACCCAAGGTCTCCAGACTCCCT TTCACTGGCTCCAATGGTGACCCAAGGTCTGCAGACTCCCT < 41bp 1 0.500439411706213 1 0.0773419439792633 experiment 0.999121176587574 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE3 ENSG00000085719 CDS Human protein_coding chr8:87560561 chr8:87560571 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_16234 0 0 1 0 2 CPNE3 chr8:87560662 5'GT 87560662 Upstream 92bp
chr2 217311861 217311861 1 + C T BLCA 217311863 + 217311843 217311883 41 TTTCATGCCTTTGGACTTCGCTACTGTGATGCCAAACGGGT TTTCATGCCTTTGGACTTTGCTACTGTGATGCCAAACGGGT < 41bp 1 0.427670297414705 1 0.0939412713050842 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311863 chr2:217311861 nonsynonymous SNV 1.000 5 19 hm5C_associated_SNPs_16235 0 0 0 2 1 SMARCAL1 chr2:217311881 5'GT 217311881 Upstream 21bp
chr2 217311861 217311861 1 + C T BLCA 217311866 + 217311846 217311886 41 CATGCCTTTGGACTTCGCTACTGTGATGCCAAACGGGTATG CATGCCTTTGGACTTTGCTACTGTGATGCCAAACGGGTATG < 41bp 1 0.38740259944823 1 0.074720174074173 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311866 chr2:217311861 nonsynonymous SNV 1.000 5 16 hm5C_associated_SNPs_16236 0 0 0 2 1 SMARCAL1 chr2:217311881 5'GT 217311881 Upstream 21bp
chr4 174242741 174242741 1 + G A BLCA 174242739 + 174242719 174242759 41 TGTGTTTTCCAGAACCTGCACAGATTTACTCATATTCCTTC TGTGTTTTCCAGAACCTGCACAAATTTACTCATATTCCTTC < 41bp 1 0.197980067982331 1 0.110338270664215 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT7 ENSG00000109586 CDS Human protein_coding chr4:174242739 chr4:174242741 nonsynonymous SNV 0.900 0 23 hm5C_associated_SNPs_16237 0 0 1 0 1 GALNT7 chr4:174242731 3'AG 174242731 Downstream 11bp
chr1 171763634 171763634 1 + C G BLCA 171763629 + 171763609 171763649 41 CCCAGCATTTGTGGAGCAATCTTTTCTACAGAAGGTTAAAA CCCAGCATTTGTGGAGCAATCTTTTGTACAGAAGGTTAAAA < 41bp 1 0.2262897460902 1 0.133596867322922 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171763629 chr1:171763634 nonsynonymous SNV 0.943 4 26 hm5C_associated_SNPs_16238 0 0 1 0 2 METTL13 chr1:171763536 3'AG 171763536 Downstream 99bp
chr1 171763634 171763634 1 + C G BLCA 171763629 + 171763609 171763649 41 CCCAGCATTTGTGGAGCAATCTTTTCTACAGAAGGTTAAAA CCCAGCATTTGTGGAGCAATCTTTTGTACAGAAGGTTAAAA < 41bp 1 0.2262897460902 1 0.133596867322922 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171763629 chr1:171763634 nonsynonymous SNV 0.943 4 26 hm5C_associated_SNPs_16238 0 0 1 0 2 METTL13 chr1:171763667 5'GT 171763667 Upstream 34bp
chr14 61997287 61997287 1 + G A BLCA 61997276 + 61997256 61997296 41 TGATGAGGTGGTCTACCCTACCTGGCTCCATGAAGATGCCA TGATGAGGTGGTCTACCCTACCTGGCTCCATAAAGATGCCA < 41bp 1 0.105811941008606 1 0.104601114988327 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRKCH ENSG00000027075;ENSG00000258989 CDS Human other chr14:61997276 chr14:61997287 nonsynonymous SNV 0.987 0 32 hm5C_associated_SNPs_16239 0 0 0 0 1 PRKCH chr14:61997313 5'GT 61997313 Upstream 27bp
chr12 14650678 14650678 1 + C T BLCA 14650689 + 14650669 14650709 41 TCTCTGCCTCAGAAGCCACACTTGAAGTTAGCACGCGTTCA TCTCTGCCTTAGAAGCCACACTTGAAGTTAGCACGCGTTCA < 41bp 1 0.680448694664514 1 0.291010737419128 experiment 0.639102610670973 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATF7IP ENSG00000171681 CDS Human protein_coding chr12:14650689 chr12:14650678 stopgain 1.000 0 10 hm5C_associated_SNPs_16241 0 0 1 0 1 ATF7IP chr12:14650588 3'AG 14650588 Downstream 91bp
chr7 100484518 100484518 1 + C A BLCA 100484519 + 100484499 100484539 41 GGGGAGCAGCGGGGGCGCTCCTCCTGAGGAGCCTCCTAAGG GGGGAGCAGCGGGGGCGCTACTCCTGAGGAGCCTCCTAAGG < 41bp 1 0.685219406390219 1 0.717107832431793 experiment 0.629561187219561 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100484519 chr7:100484518 nonsynonymous SNV 0.164 1 20 hm5C_associated_SNPs_16245 0 0 1 0 1 SRRT chr7:100484589 5'GT 100484589 Upstream 72bp
chr6 26091192 26091192 1 + G T BLCA 26091207 + 26091187 26091227 41 TCGCCGTGTGGAGCCCCGAACTCCATGGGTTTCCAGTAGAA TCGCCTTGTGGAGCCCCGAACTCCATGGGTTTCCAGTAGAA < 41bp 1 0.785263348331895 1 0.929043054580688 experiment 0.429473303336211 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26091207 chr6:26091192 nonsynonymous SNV 0.723 0 6 hm5C_associated_SNPs_16247 1 0 0 0 1 HFE chr6:26091138 3'AG 26091138 Downstream 55bp
chr10 1042091 1042091 1 + C A BLCA 1042089 + 1042069 1042109 41 TGATGAAGTATGGCGACTCTCTCTACCGCTGCAAACAGCTG TGATGAAGTATGGCGACTCTCTATACCGCTGCAAACAGCTG < 41bp 1 0.708324483971954 1 0.395673543214798 experiment 0.583351032056092 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1042089 chr10:1042091 synonymous SNV . 0 23 hm5C_associated_SNPs_16248 0 0 1 0 1 GTPBP4 chr10:1042182 5'GT 1042182 Upstream 92bp
chr9 91930099 91930099 1 + C T BLCA 91930100 + 91930080 91930120 41 AACAGGCATGTTATGTTACCCAGAGAACTTTCCAAACAAGT AACAGGCATGTTATGTTACTCAGAGAACTTTCCAAACAAGT < 41bp 1 0.568644866828685 1 0.572099804878235 experiment 0.862710266342629 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CKS2 ENSG00000123975 CDS Human protein_coding chr9:91930100 chr9:91930099 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_16249 0 0 1 0 1 CKS2 chr9:91930085 3'AG 91930085 Downstream 15bp
chr5 154244931 154244931 1 + C G BLCA 154244920 + 154244900 154244940 41 CTTCTGGAATCAATACTTGGCAGTTCAATTTCAAATTTAAC CTTCTGGAATCAATACTTGGCAGTTCAATTTGAAATTTAAC < 41bp 1 0.0523699983612321 1 0.0983541309833527 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CNOT8 ENSG00000155508 CDS Human protein_coding chr5:154244920 chr5:154244931 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_16250 0 0 1 0 1 CNOT8 chr5:154244945 5'GT 154244945 Upstream 15bp
chr16 69942718 69942718 1 + C G BLCA 69942737 + 69942717 69942757 41 CCAAGACCACCACCTGGGAGCGGCCCCTTCCTCCAGGGTAG CGAAGACCACCACCTGGGAGCGGCCCCTTCCTCCAGGGTAG < 41bp 1 0.179654514833308 1 0.267308682203293 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WWP2 ENSG00000198373 CDS Human protein_coding chr16:69942737 chr16:69942718 synonymous SNV . 0 2 hm5C_associated_SNPs_16254 0 0 1 0 1 WWP2 chr16:69942664 3'AG 69942664 Downstream 55bp
chr3 17056240 17056240 1 + C A BLCA 17056251 + 17056231 17056271 41 GCCTCTCCTCTGTGGCCAATCTCATGCAGTGCATGTTGGCG GCCTCTCCTATGTGGCCAATCTCATGCAGTGCATGTTGGCG < 41bp 1 0.493673523972158 1 0.0978766679763794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCL2 ENSG00000154822 CDS Human protein_coding chr3:17056251 chr3:17056240 nonsynonymous SNV 0.984 2 10 hm5C_associated_SNPs_16256 0 0 1 0 1 PLCL2 chr3:17056200 3'AG 17056200 Downstream 41bp
chr4 144390255 144390255 1 + G A BLCA 144390263 + 144390243 144390283 41 TGACCAACAGAAGACCTTGGCTCTAAAGAGTACCCGGGAAG TGACCAACAGAAAACCTTGGCTCTAAAGAGTACCCGGGAAG < 41bp 1 0.526561020507813 1 0.822988271713257 experiment 0.946877958984375 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control GAB1 ENSG00000109458 CDS Human protein_coding chr4:144390263 chr4:144390255 synonymous SNV . 0 13 hm5C_associated_SNPs_16257 0 0 1 0 1 GAB1 chr4:144390184 3'AG 144390184 Downstream 72bp
chr22 42276798 42276798 1 + G A BLCA 42276812 + 42276792 42276832 41 CGCCTGGACCTGGCCTGCAGCCTCTCCTGGAACGTGATCCG CGCCTGAACCTGGCCTGCAGCCTCTCCTGGAACGTGATCCG < 41bp 1 0.0690193782416246 1 0.0483216941356659 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42276812 chr22:42276798 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_16258 0 0 1 0 1 SREBF2 chr22:42276720 3'AG 42276720 Downstream 79bp
chr6 31604138 31604138 1 + C G BLCA 31604122 + 31604102 31604142 41 AGTTGCCGGCTGGAGGAGTTCTCTACCCTCCACCTTCCTTC AGTTGCCGGCTGGAGGAGTTCTCTACCCTCCACCTTGCTTC < 41bp 1 0.695585697002797 1 0.804964900016785 experiment 0.608828605994405 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31604122 chr6:31604138 nonsynonymous SNV 0.999 4 37 hm5C_associated_SNPs_16259 0 0 1 0 1 PRRC2A chr6:31604196 5'GT 31604196 Upstream 59bp
chr4 1725548 1725548 1 + G A BLCA 1725560 + 1725540 1725580 41 CTCAGGATGACACCCTTGGACTGGAAAACTCACACCCGGTC CTCAGGATAACACCCTTGGACTGGAAAACTCACACCCGGTC < 41bp 1 0.795767941265335 1 0.46776071190834 experiment 0.40846411746933 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TACC3 ENSG00000013810 CDS Human protein_coding chr4:1725560 chr4:1725548 nonsynonymous SNV 0.002 2 9 hm5C_associated_SNPs_16260 0 0 1 0 2 TACC3 chr4:1725455 3'AG 1725455 Downstream 94bp
chr4 1725548 1725548 1 + G A BLCA 1725560 + 1725540 1725580 41 CTCAGGATGACACCCTTGGACTGGAAAACTCACACCCGGTC CTCAGGATAACACCCTTGGACTGGAAAACTCACACCCGGTC < 41bp 1 0.795767941265335 1 0.46776071190834 experiment 0.40846411746933 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TACC3 ENSG00000013810 CDS Human protein_coding chr4:1725560 chr4:1725548 nonsynonymous SNV 0.002 2 9 hm5C_associated_SNPs_16260 0 0 1 0 2 TACC3 chr4:1725597 5'GT 1725597 Upstream 50bp
chr1 201981872 201981872 1 + G A BLCA 201981858 + 201981838 201981878 41 CTGTGGCGCAGGAGCCCCCTCCCCTGGCAGCTCTGACGTCT CTGTGGCGCAGGAGCCCCCTCCCCTGGCAGCTCTAACGTCT < 41bp 1 0.30877410341358 1 0.421292871236801 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ELF3 ENSG00000163435 CDS Human protein_coding chr1:201981858 chr1:201981872 nonsynonymous SNV 0.065 0 35 hm5C_associated_SNPs_16261 0 0 0 0 1 ELF3 chr1:201981887 5'GT 201981887 Upstream 16bp
chr11 985535 985535 1 + G C BLCA 985545 + 985525 985565 41 CCAACGCGAAGAATGCCGTGCTCTTCGAGGCCATCAGCTTA CCAACGCGAACAATGCCGTGCTCTTCGAGGCCATCAGCTTA < 41bp 1 0.0512636403406544 1 0.0475075244903564 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:985545 chr11:985535 nonsynonymous SNV 0.776 3 11 hm5C_associated_SNPs_16262 0 0 1 0 1 AP2A2 chr11:985582 5'GT 985582 Upstream 48bp
chr7 129950685 129950685 1 + G A BLCA 129950671 + 129950651 129950691 41 GCTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTG GCTCCGAAGTGTACCATGGACCCCACGCCAATTCAGAAGTG < 41bp 1 0.545096389356334 1 0.0697830319404602 experiment 0.909807221287332 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950671 chr7:129950685 synonymous SNV . 0 35 hm5C_associated_SNPs_16263 0 0 0 0 1 CPA4 chr7:129950627 3'AG 129950627 Downstream 59bp
chr7 129950685 129950685 1 + G A BLCA 129950672 + 129950652 129950692 41 CTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTGG CTCCGAAGTGTACCATGGACCCCACGCCAATTCAGAAGTGG < 41bp 1 0.087070647076293 1 0.0602586269378662 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950672 chr7:129950685 synonymous SNV . 0 34 hm5C_associated_SNPs_16264 0 0 0 0 1 CPA4 chr7:129950627 3'AG 129950627 Downstream 59bp
chr7 130021505 130021505 1 + C T BLCA 130021489 + 130021469 130021509 41 AGCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCC AGCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTTCCCC < 41bp 1 0.110534078661629 1 0.216015696525574 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021489 chr7:130021505 nonsynonymous SNV 0.248 0 37 hm5C_associated_SNPs_16265 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 35bp
chr7 130021505 130021505 1 + C T BLCA 130021489 + 130021469 130021509 41 AGCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCC AGCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTTCCCC < 41bp 1 0.110534078661629 1 0.216015696525574 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021489 chr7:130021505 nonsynonymous SNV 0.248 0 37 hm5C_associated_SNPs_16265 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 17bp
chr7 130021505 130021505 1 + C T BLCA 130021490 + 130021470 130021510 41 GCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCA GCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTTCCCCA < 41bp 1 0.482250790215219 1 0.269678235054016 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021490 chr7:130021505 nonsynonymous SNV 0.248 0 36 hm5C_associated_SNPs_16266 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 35bp
chr7 130021505 130021505 1 + C T BLCA 130021490 + 130021470 130021510 41 GCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCA GCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTTCCCCA < 41bp 1 0.482250790215219 1 0.269678235054016 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021490 chr7:130021505 nonsynonymous SNV 0.248 0 36 hm5C_associated_SNPs_16266 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 17bp
chr7 130021505 130021505 1 + C T BLCA 130021493 + 130021473 130021513 41 GGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCG GGACTTCTGGCGGGGGCCTGCCCACCCTGGCTTCCCCATCG < 41bp 1 0.314858135377309 1 0.299221456050873 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021493 chr7:130021505 nonsynonymous SNV 0.248 0 33 hm5C_associated_SNPs_16267 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 35bp
chr7 130021505 130021505 1 + C T BLCA 130021493 + 130021473 130021513 41 GGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCG GGACTTCTGGCGGGGGCCTGCCCACCCTGGCTTCCCCATCG < 41bp 1 0.314858135377309 1 0.299221456050873 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021493 chr7:130021505 nonsynonymous SNV 0.248 0 33 hm5C_associated_SNPs_16267 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 17bp
chr7 130021505 130021505 1 + C T BLCA 130021494 + 130021474 130021514 41 GACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGA GACTTCTGGCGGGGGCCTGCCCACCCTGGCTTCCCCATCGA < 41bp 1 0.360747383670432 1 0.0919402837753296 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021494 chr7:130021505 nonsynonymous SNV 0.248 0 32 hm5C_associated_SNPs_16268 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 35bp
chr7 130021505 130021505 1 + C T BLCA 130021494 + 130021474 130021514 41 GACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGA GACTTCTGGCGGGGGCCTGCCCACCCTGGCTTCCCCATCGA < 41bp 1 0.360747383670432 1 0.0919402837753296 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021494 chr7:130021505 nonsynonymous SNV 0.248 0 32 hm5C_associated_SNPs_16268 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 17bp
chr7 130021505 130021505 1 + C T BLCA 130021495 + 130021475 130021515 41 ACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGAC ACTTCTGGCGGGGGCCTGCCCACCCTGGCTTCCCCATCGAC < 41bp 1 0.720486720080833 1 0.448260515928268 experiment 0.559026559838333 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021495 chr7:130021505 nonsynonymous SNV 0.248 0 31 hm5C_associated_SNPs_16269 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 35bp
chr7 130021505 130021505 1 + C T BLCA 130021495 + 130021475 130021515 41 ACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGAC ACTTCTGGCGGGGGCCTGCCCACCCTGGCTTCCCCATCGAC < 41bp 1 0.720486720080833 1 0.448260515928268 experiment 0.559026559838333 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021495 chr7:130021505 nonsynonymous SNV 0.248 0 31 hm5C_associated_SNPs_16269 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 17bp
chr7 130021505 130021505 1 + C T BLCA 130021497 + 130021477 130021517 41 TTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGT TTCTGGCGGGGGCCTGCCCACCCTGGCTTCCCCATCGACGT < 41bp 1 0.524161581441015 1 0.0963522791862488 experiment 0.95167683711797 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021497 chr7:130021505 nonsynonymous SNV 0.248 0 29 hm5C_associated_SNPs_16270 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 35bp
chr7 130021505 130021505 1 + C T BLCA 130021497 + 130021477 130021517 41 TTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGT TTCTGGCGGGGGCCTGCCCACCCTGGCTTCCCCATCGACGT < 41bp 1 0.524161581441015 1 0.0963522791862488 experiment 0.95167683711797 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021497 chr7:130021505 nonsynonymous SNV 0.248 0 29 hm5C_associated_SNPs_16270 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 17bp
chr7 130021505 130021505 1 + C T BLCA 130021498 + 130021478 130021518 41 TCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC TCTGGCGGGGGCCTGCCCACCCTGGCTTCCCCATCGACGTC < 41bp 1 0.629170483626827 1 0.158215224742889 experiment 0.741659032746347 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021498 chr7:130021505 nonsynonymous SNV 0.248 0 28 hm5C_associated_SNPs_16271 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 35bp
chr7 130021505 130021505 1 + C T BLCA 130021498 + 130021478 130021518 41 TCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC TCTGGCGGGGGCCTGCCCACCCTGGCTTCCCCATCGACGTC < 41bp 1 0.629170483626827 1 0.158215224742889 experiment 0.741659032746347 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021498 chr7:130021505 nonsynonymous SNV 0.248 0 28 hm5C_associated_SNPs_16271 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 17bp
chr7 130021505 130021505 1 + C T BLCA 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT CGGGGGCCTGCCCACCCTGGCTTCCCCATCGACGTCCGAGT < 41bp 1 0.0768035688412535 1 0.0278977453708649 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021505 nonsynonymous SNV 0.248 0 23 hm5C_associated_SNPs_16272 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 35bp
chr7 130021505 130021505 1 + C T BLCA 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT CGGGGGCCTGCCCACCCTGGCTTCCCCATCGACGTCCGAGT < 41bp 1 0.0768035688412535 1 0.0278977453708649 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021505 nonsynonymous SNV 0.248 0 23 hm5C_associated_SNPs_16272 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 17bp
chr7 130021505 130021505 1 + C T BLCA 130021506 + 130021486 130021526 41 GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC GGGCCTGCCCACCCTGGCTTCCCCATCGACGTCCGAGTGCC < 41bp 1 0.518049277853407 1 0.23035728931427 experiment 0.963901444293185 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021506 chr7:130021505 nonsynonymous SNV 0.248 0 20 hm5C_associated_SNPs_16273 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 35bp
chr7 130021505 130021505 1 + C T BLCA 130021506 + 130021486 130021526 41 GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC GGGCCTGCCCACCCTGGCTTCCCCATCGACGTCCGAGTGCC < 41bp 1 0.518049277853407 1 0.23035728931427 experiment 0.963901444293185 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021506 chr7:130021505 nonsynonymous SNV 0.248 0 20 hm5C_associated_SNPs_16273 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 17bp
chr7 130021505 130021505 1 + C T BLCA 130021507 + 130021487 130021527 41 GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC GGCCTGCCCACCCTGGCTTCCCCATCGACGTCCGAGTGCCC < 41bp 1 0.0974881689069382 1 0.162381440401077 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021507 chr7:130021505 nonsynonymous SNV 0.248 0 19 hm5C_associated_SNPs_16274 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 35bp
chr7 130021505 130021505 1 + C T BLCA 130021507 + 130021487 130021527 41 GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC GGCCTGCCCACCCTGGCTTCCCCATCGACGTCCGAGTGCCC < 41bp 1 0.0974881689069382 1 0.162381440401077 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021507 chr7:130021505 nonsynonymous SNV 0.248 0 19 hm5C_associated_SNPs_16274 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 17bp
chr7 130021505 130021505 1 + C T BLCA 130021508 + 130021488 130021528 41 GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT GCCTGCCCACCCTGGCTTCCCCATCGACGTCCGAGTGCCCT < 41bp 1 0.0769594405162324 1 0.284480929374695 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021508 chr7:130021505 nonsynonymous SNV 0.248 0 18 hm5C_associated_SNPs_16275 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 35bp
chr7 130021505 130021505 1 + C T BLCA 130021508 + 130021488 130021528 41 GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT GCCTGCCCACCCTGGCTTCCCCATCGACGTCCGAGTGCCCT < 41bp 1 0.0769594405162324 1 0.284480929374695 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021508 chr7:130021505 nonsynonymous SNV 0.248 0 18 hm5C_associated_SNPs_16275 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 17bp
chr7 130021505 130021505 1 + C T BLCA 130021509 + 130021489 130021529 41 CCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT CCTGCCCACCCTGGCTTCCCCATCGACGTCCGAGTGCCCTT < 41bp 1 0.465803040376214 1 0.220420658588409 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021509 chr7:130021505 nonsynonymous SNV 0.248 0 17 hm5C_associated_SNPs_16276 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 35bp
chr7 130021505 130021505 1 + C T BLCA 130021509 + 130021489 130021529 41 CCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT CCTGCCCACCCTGGCTTCCCCATCGACGTCCGAGTGCCCTT < 41bp 1 0.465803040376214 1 0.220420658588409 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021509 chr7:130021505 nonsynonymous SNV 0.248 0 17 hm5C_associated_SNPs_16276 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 17bp
chr7 130021505 130021505 1 + C T BLCA 130021515 + 130021495 130021535 41 CACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAG CACCCTGGCTTCCCCATCGACGTCCGAGTGCCCTTCCCCAG < 41bp 1 0.418359895309126 1 0.382521688938141 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021515 chr7:130021505 nonsynonymous SNV 0.248 0 11 hm5C_associated_SNPs_16277 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 35bp
chr7 130021505 130021505 1 + C T BLCA 130021515 + 130021495 130021535 41 CACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAG CACCCTGGCTTCCCCATCGACGTCCGAGTGCCCTTCCCCAG < 41bp 1 0.418359895309126 1 0.382521688938141 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021515 chr7:130021505 nonsynonymous SNV 0.248 0 11 hm5C_associated_SNPs_16277 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 17bp
chr7 130021505 130021505 1 + C T BLCA 130021518 + 130021498 130021538 41 CCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCAT CCTGGCTTCCCCATCGACGTCCGAGTGCCCTTCCCCAGCAT < 41bp 1 0.514710445799772 1 0.623761236667633 experiment 0.970579108400456 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021518 chr7:130021505 nonsynonymous SNV 0.248 0 8 hm5C_associated_SNPs_16278 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 35bp
chr7 130021505 130021505 1 + C T BLCA 130021518 + 130021498 130021538 41 CCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCAT CCTGGCTTCCCCATCGACGTCCGAGTGCCCTTCCCCAGCAT < 41bp 1 0.514710445799772 1 0.623761236667633 experiment 0.970579108400456 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021518 chr7:130021505 nonsynonymous SNV 0.248 0 8 hm5C_associated_SNPs_16278 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 17bp
chr7 130021505 130021505 1 + C T BLCA 130021519 + 130021499 130021539 41 CTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATC CTGGCTTCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATC < 41bp 1 0.400303595234917 1 0.52924507856369 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021519 chr7:130021505 nonsynonymous SNV 0.248 0 7 hm5C_associated_SNPs_16279 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 35bp
chr7 130021505 130021505 1 + C T BLCA 130021519 + 130021499 130021539 41 CTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATC CTGGCTTCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATC < 41bp 1 0.400303595234917 1 0.52924507856369 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021519 chr7:130021505 nonsynonymous SNV 0.248 0 7 hm5C_associated_SNPs_16279 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 17bp
chr7 130021505 130021505 1 + C T BLCA 130021525 + 130021505 130021545 41 CCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCG TCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCG < 41bp 1 0.0699091821466056 1 0.0203377604484558 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021525 chr7:130021505 nonsynonymous SNV 0.248 0 1 hm5C_associated_SNPs_16280 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 35bp
chr7 130021505 130021505 1 + C T BLCA 130021525 + 130021505 130021545 41 CCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCG TCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCG < 41bp 1 0.0699091821466056 1 0.0203377604484558 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021525 chr7:130021505 nonsynonymous SNV 0.248 0 1 hm5C_associated_SNPs_16280 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 17bp
chr11 47600884 47600884 1 + G A BLCA 47600875 + 47600855 47600895 41 GAGGCGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATG GAGGCGGGAGAGCGCCGGGGCCGACACGCACCGTGAGTATG < 41bp 1 0.091210508323585 1 0.0581190288066864 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600875 chr11:47600884 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_16281 0 0 1 0 2 NDUFS3 chr11:47600821 3'AG 47600821 Downstream 64bp
chr11 47600884 47600884 1 + G A BLCA 47600875 + 47600855 47600895 41 GAGGCGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATG GAGGCGGGAGAGCGCCGGGGCCGACACGCACCGTGAGTATG < 41bp 1 0.091210508323585 1 0.0581190288066864 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600875 chr11:47600884 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_16281 0 0 1 0 2 NDUFS3 chr11:47600886 5'GT 47600886 Upstream 3bp
chr11 47600884 47600884 1 + G A BLCA 47600876 + 47600856 47600896 41 AGGCGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATGT AGGCGGGAGAGCGCCGGGGCCGACACGCACCGTGAGTATGT < 41bp 1 0.774460355896975 1 0.181994736194611 experiment 0.451079288206049 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600876 chr11:47600884 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_16282 0 0 1 0 2 NDUFS3 chr11:47600821 3'AG 47600821 Downstream 64bp
chr11 47600884 47600884 1 + G A BLCA 47600876 + 47600856 47600896 41 AGGCGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATGT AGGCGGGAGAGCGCCGGGGCCGACACGCACCGTGAGTATGT < 41bp 1 0.774460355896975 1 0.181994736194611 experiment 0.451079288206049 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600876 chr11:47600884 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_16282 0 0 1 0 2 NDUFS3 chr11:47600886 5'GT 47600886 Upstream 3bp
chr11 47600884 47600884 1 + G A BLCA 47600885 + 47600865 47600905 41 AGCGCCGGGGCCGACACGCGCCGTGAGTATGTGCGGGCAGC AGCGCCGGGGCCGACACGCACCGTGAGTATGTGCGGGCAGC < 41bp 1 0.267274586174639 1 0.0466585755348206 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600885 chr11:47600884 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_16283 0 0 1 0 2 NDUFS3 chr11:47600821 3'AG 47600821 Downstream 64bp
chr11 47600884 47600884 1 + G A BLCA 47600885 + 47600865 47600905 41 AGCGCCGGGGCCGACACGCGCCGTGAGTATGTGCGGGCAGC AGCGCCGGGGCCGACACGCACCGTGAGTATGTGCGGGCAGC < 41bp 1 0.267274586174639 1 0.0466585755348206 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600885 chr11:47600884 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_16283 0 0 1 0 2 NDUFS3 chr11:47600886 5'GT 47600886 Upstream 3bp
chr11 47600884 47600884 1 + G A BLCA 47600886 + 47600866 47600906 41 GCGCCGGGGCCGACACGCGCCGTGAGTATGTGCGGGCAGCG GCGCCGGGGCCGACACGCACCGTGAGTATGTGCGGGCAGCG < 41bp 1 0.795846749768309 1 0.124795764684677 experiment 0.408306500463382 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600886 chr11:47600884 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_16284 0 0 1 0 2 NDUFS3 chr11:47600821 3'AG 47600821 Downstream 64bp
chr11 47600884 47600884 1 + G A BLCA 47600886 + 47600866 47600906 41 GCGCCGGGGCCGACACGCGCCGTGAGTATGTGCGGGCAGCG GCGCCGGGGCCGACACGCACCGTGAGTATGTGCGGGCAGCG < 41bp 1 0.795846749768309 1 0.124795764684677 experiment 0.408306500463382 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600886 chr11:47600884 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_16284 0 0 1 0 2 NDUFS3 chr11:47600886 5'GT 47600886 Upstream 3bp
chr3 128998681 128998681 1 + G C BLCA 128998697 + 128998677 128998717 41 CCCTGATAAGTACTGCCCCTCTTACAACAAGAGTCCTCAAT CCCTCATAAGTACTGCCCCTCTTACAACAAGAGTCCTCAAT < 41bp 1 0.0659877791303753 1 0.0294438898563385 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMCES ENSG00000183624 CDS Human protein_coding chr3:128998697 chr3:128998681 nonsynonymous SNV 0.074 0 5 hm5C_associated_SNPs_16285 0 0 1 0 1 HMCES chr3:128998758 5'GT 128998758 Upstream 78bp
chr2 178378611 178378611 1 + C T BLCA 178378621 + 178378601 178378641 41 GAAGGGTGTTCAGTTTGCTCCTTTTTCTACATGCAGGTAAG GAAGGGTGTTTAGTTTGCTCCTTTTTCTACATGCAGGTAAG < 41bp 1 0.0333487841563326 1 0.106463074684143 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGPS ENSG00000018510 CDS Human protein_coding chr2:178378621 chr2:178378611 stopgain 0.998 1 11 hm5C_associated_SNPs_16287 0 0 1 0 1 AGPS chr2:178378636 5'GT 178378636 Upstream 26bp
chr8 48874100 48874100 1 + C G BLCA 48874104 + 48874084 48874124 41 GAGGATGCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA GAGGATGCCAGGTCATGTCCCTCTCAGAGACGTAGAGGCGA < 41bp 1 0.153889895080416 1 0.0718506276607513 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874104 chr8:48874100 nonsynonymous SNV 0.012 1 17 hm5C_associated_SNPs_16299 0 0 1 1 1 MCM4 chr8:48874076 3'AG 48874076 Downstream 25bp
chr21 45546826 45546826 1 + C T BLCA 45546824 + 45546804 45546844 41 AAACCTGAGATCAGGGTGACCTCACTCCGCTTCTCTCCCAC AAACCTGAGATCAGGGTGACCTTACTCCGCTTCTCTCCCAC < 41bp 1 0.171478460951252 1 0.127068400382996 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45546824 chr21:45546826 nonsynonymous SNV 0.442 1 23 hm5C_associated_SNPs_16301 0 0 1 0 2 PWP2 chr21:45546781 3'AG 45546781 Downstream 46bp
chr21 45546826 45546826 1 + C T BLCA 45546824 + 45546804 45546844 41 AAACCTGAGATCAGGGTGACCTCACTCCGCTTCTCTCCCAC AAACCTGAGATCAGGGTGACCTTACTCCGCTTCTCTCCCAC < 41bp 1 0.171478460951252 1 0.127068400382996 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45546824 chr21:45546826 nonsynonymous SNV 0.442 1 23 hm5C_associated_SNPs_16301 0 0 1 0 2 PWP2 chr21:45546846 5'GT 45546846 Upstream 21bp
chr17 28750667 28750667 1 + C T BLCA 28750676 + 28750656 28750696 41 ACACTAGAATTCACCTTATGCCATCCATGAATCCTGATGGG ACACTAGAATTTACCTTATGCCATCCATGAATCCTGATGGG < 41bp 1 0.0344255433704737 1 0.031213104724884 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28750676 chr17:28750667 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_16302 0 0 1 0 1 CPD chr17:28750715 5'GT 28750715 Upstream 49bp
chr21 45546836 45546836 1 + C T BLCA 45546824 + 45546804 45546844 41 AAACCTGAGATCAGGGTGACCTCACTCCGCTTCTCTCCCAC AAACCTGAGATCAGGGTGACCTCACTCCGCTTTTCTCCCAC < 41bp 1 0.408840818754499 1 0.189801752567291 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45546824 chr21:45546836 synonymous SNV . 0 33 hm5C_associated_SNPs_16303 0 0 1 0 2 PWP2 chr21:45546781 3'AG 45546781 Downstream 56bp
chr21 45546836 45546836 1 + C T BLCA 45546824 + 45546804 45546844 41 AAACCTGAGATCAGGGTGACCTCACTCCGCTTCTCTCCCAC AAACCTGAGATCAGGGTGACCTCACTCCGCTTTTCTCCCAC < 41bp 1 0.408840818754499 1 0.189801752567291 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45546824 chr21:45546836 synonymous SNV . 0 33 hm5C_associated_SNPs_16303 0 0 1 0 2 PWP2 chr21:45546846 5'GT 45546846 Upstream 11bp
chr15 40269014 40269014 1 + G A BLCA 40269028 + 40269008 40269048 41 GAGGACGAGCACGGTGGCGTCTTCTCCCAGTCCTTCCTGTA GAGGACAAGCACGGTGGCGTCTTCTCCCAGTCCTTCCTGTA < 41bp 1 0.26753158049167 1 0.0573285520076752 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40269028 chr15:40269014 nonsynonymous SNV 0.666 0 7 hm5C_associated_SNPs_16304 0 0 1 0 1 EIF2AK4 chr15:40269045 5'GT 40269045 Upstream 32bp
chr9 100773666 100773666 1 + G A BLCA 100773650 + 100773630 100773670 41 GATGTAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGA GATGTAGAAGGGGATGAGGACGACGATGAAGTCAGTAAGGA < 41bp 1 0.681979355526281 1 0.525973737239838 experiment 0.636041288947438 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773650 chr9:100773666 nonsynonymous SNV 0.969 1 37 hm5C_associated_SNPs_16305 0 0 1 0 1 ANP32B chr9:100773671 5'GT 100773671 Upstream 6bp
chr9 100773666 100773666 1 + G A BLCA 100773653 + 100773633 100773673 41 GTAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGAGGT GTAGAAGGGGATGAGGACGACGATGAAGTCAGTAAGGAGGT < 41bp 1 0.416325363924969 1 0.36298331618309 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773653 chr9:100773666 nonsynonymous SNV 0.969 1 34 hm5C_associated_SNPs_16306 0 0 1 0 1 ANP32B chr9:100773671 5'GT 100773671 Upstream 6bp
chr9 100773666 100773666 1 + G A BLCA 100773662 + 100773642 100773682 41 GATGAGGACGACGATGAAGTCAGTGAGGAGGTCAGTGCAGC GATGAGGACGACGATGAAGTCAGTAAGGAGGTCAGTGCAGC < 41bp 1 0.788269596493791 1 0.264003843069077 experiment 0.423460807012418 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773662 chr9:100773666 nonsynonymous SNV 0.969 1 25 hm5C_associated_SNPs_16307 0 0 1 0 1 ANP32B chr9:100773671 5'GT 100773671 Upstream 6bp
chr12 124102401 124102401 1 + C A BLCA 124102395 + 124102375 124102415 41 CCCATGGAAGAGTCATACATCAATTTCCTTGCAATTAACCA CCCATGGAAGAGTCATACATCAATTTACTTGCAATTAACCA < 41bp 1 0.172905271574247 1 0.175170451402664 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX55 ENSG00000111364 CDS Human protein_coding chr12:124102395 chr12:124102401 nonsynonymous SNV 0.971 1 27 hm5C_associated_SNPs_16308 0 0 1 0 2 DDX55 chr12:124102305 3'AG 124102305 Downstream 97bp
chr12 124102401 124102401 1 + C A BLCA 124102395 + 124102375 124102415 41 CCCATGGAAGAGTCATACATCAATTTCCTTGCAATTAACCA CCCATGGAAGAGTCATACATCAATTTACTTGCAATTAACCA < 41bp 1 0.172905271574247 1 0.175170451402664 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX55 ENSG00000111364 CDS Human protein_coding chr12:124102395 chr12:124102401 nonsynonymous SNV 0.971 1 27 hm5C_associated_SNPs_16308 0 0 1 0 2 DDX55 chr12:124102419 5'GT 124102419 Upstream 19bp
chr10 118306870 118306870 1 + G T BLCA 118306851 + 118306831 118306871 41 CGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGG CGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACTG < 41bp 1 0.711594742011887 1 0.22812607884407 experiment 0.576810515976225 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306851 chr10:118306870 synonymous SNV . 0 40 hm5C_associated_SNPs_16310 0 0 0 0 2 PNLIP chr10:118306806 3'AG 118306806 Downstream 65bp
chr10 118306870 118306870 1 + G T BLCA 118306851 + 118306831 118306871 41 CGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGG CGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACTG < 41bp 1 0.711594742011887 1 0.22812607884407 experiment 0.576810515976225 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306851 chr10:118306870 synonymous SNV . 0 40 hm5C_associated_SNPs_16310 0 0 0 0 2 PNLIP chr10:118306960 5'GT 118306960 Upstream 91bp
chr10 118306870 118306870 1 + G T BLCA 118306853 + 118306833 118306873 41 GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAA GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACTGAA < 41bp 1 0.245468183109279 1 0.16872975230217 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306853 chr10:118306870 synonymous SNV . 0 38 hm5C_associated_SNPs_16311 0 0 0 0 2 PNLIP chr10:118306806 3'AG 118306806 Downstream 65bp
chr10 118306870 118306870 1 + G T BLCA 118306853 + 118306833 118306873 41 GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAA GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACTGAA < 41bp 1 0.245468183109279 1 0.16872975230217 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306853 chr10:118306870 synonymous SNV . 0 38 hm5C_associated_SNPs_16311 0 0 0 0 2 PNLIP chr10:118306960 5'GT 118306960 Upstream 91bp
chr10 118306870 118306870 1 + G T BLCA 118306854 + 118306834 118306874 41 CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAAA CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACTGAAA < 41bp 1 0.525349111511167 1 0.723061561584473 experiment 0.949301776977667 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306854 chr10:118306870 synonymous SNV . 0 37 hm5C_associated_SNPs_16312 0 0 0 0 2 PNLIP chr10:118306806 3'AG 118306806 Downstream 65bp
chr10 118306870 118306870 1 + G T BLCA 118306854 + 118306834 118306874 41 CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAAA CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACTGAAA < 41bp 1 0.525349111511167 1 0.723061561584473 experiment 0.949301776977667 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306854 chr10:118306870 synonymous SNV . 0 37 hm5C_associated_SNPs_16312 0 0 0 0 2 PNLIP chr10:118306960 5'GT 118306960 Upstream 91bp
chr11 61106814 61106814 1 + G A BLCA 61106796 + 61106776 61106816 41 GGCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCGGT GGCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCAGT < 41bp 1 0.631320990224128 1 0.468068242073059 experiment 0.737358019551743 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61106796 chr11:61106814 synonymous SNV . 0 39 hm5C_associated_SNPs_16313 0 0 1 0 2 TKFC chr11:61106726 3'AG 61106726 Downstream 89bp
chr11 61106814 61106814 1 + G A BLCA 61106796 + 61106776 61106816 41 GGCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCGGT GGCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCAGT < 41bp 1 0.631320990224128 1 0.468068242073059 experiment 0.737358019551743 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61106796 chr11:61106814 synonymous SNV . 0 39 hm5C_associated_SNPs_16313 0 0 1 0 2 TKFC chr11:61106907 5'GT 61106907 Upstream 94bp
chr11 61106814 61106814 1 + G A BLCA 61106797 + 61106777 61106817 41 GCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCGGTG GCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCAGTG < 41bp 1 0.788620331150074 1 0.667881786823273 experiment 0.422759337699851 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61106797 chr11:61106814 synonymous SNV . 0 38 hm5C_associated_SNPs_16314 0 0 1 0 2 TKFC chr11:61106726 3'AG 61106726 Downstream 89bp
chr11 61106814 61106814 1 + G A BLCA 61106797 + 61106777 61106817 41 GCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCGGTG GCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCAGTG < 41bp 1 0.788620331150074 1 0.667881786823273 experiment 0.422759337699851 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61106797 chr11:61106814 synonymous SNV . 0 38 hm5C_associated_SNPs_16314 0 0 1 0 2 TKFC chr11:61106907 5'GT 61106907 Upstream 94bp
chr8 33356007 33356007 1 + G A BLCA 33355999 + 33355979 33356019 41 TGAAGATCAGGATGGTAAATCCTCCAGTGAGGAGGAGGAAG TGAAGATCAGGATGGTAAATCCTCCAGTAAGGAGGAGGAAG < 41bp 1 0.130746067381847 1 0.118553042411804 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAK16 ENSG00000198042 CDS Human protein_coding chr8:33355999 chr8:33356007 nonsynonymous SNV 0.994 0 29 hm5C_associated_SNPs_16315 0 0 1 0 1 MAK16 chr8:33355950 3'AG 33355950 Downstream 58bp
chr1 228479691 228479691 1 + C G BLCA 228479689 + 228479669 228479709 41 GTGTGAACTGAGCAAGGTGGCCCCTGTGGAGTGGAGGAAGG GTGTGAACTGAGCAAGGTGGCCGCTGTGGAGTGGAGGAAGG < 41bp 1 0.0530301873899263 1 0.386653870344162 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228479689 chr1:228479691 nonsynonymous SNV 0.017 3 23 hm5C_associated_SNPs_16316 0 0 1 0 1 OBSCN chr1:228479599 3'AG 228479599 Downstream 93bp
chr19 45375390 45375390 1 + G A BLCA 45375373 + 45375353 45375393 41 AGCATGAGAGCTTCGAGGAACCAGCCCTGATACCTGTGACC AGCATGAGAGCTTCGAGGAACCAGCCCTGATACCTGTAACC < 41bp 1 0.0605672162335236 1 0.503134548664093 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45375373 chr19:45375390 synonymous SNV . 0 38 hm5C_associated_SNPs_16317 0 0 0 0 1 NECTIN2 chr19:45375406 5'GT 45375406 Upstream 17bp
chr19 45375390 45375390 1 + G A BLCA 45375374 + 45375354 45375394 41 GCATGAGAGCTTCGAGGAACCAGCCCTGATACCTGTGACCC GCATGAGAGCTTCGAGGAACCAGCCCTGATACCTGTAACCC < 41bp 1 0.40939456274997 1 0.749575078487396 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45375374 chr19:45375390 synonymous SNV . 0 37 hm5C_associated_SNPs_16318 0 0 0 0 1 NECTIN2 chr19:45375406 5'GT 45375406 Upstream 17bp
chr19 4475339 4475339 1 + C T BLCA 4475343 + 4475323 4475363 41 ATCTTTTTCTTTGGCACACACGAAACGTAAGTGTCCCCTTC ATCTTTTTCTTTGGCATACACGAAACGTAAGTGTCCCCTTC < 41bp 1 0.595878384780628 1 0.277012974023819 experiment 0.808243230438745 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4475343 chr19:4475339 nonsynonymous SNV 0.849 3 17 hm5C_associated_SNPs_16319 0 0 1 0 2 HDGFL2 chr19:4475272 3'AG 4475272 Downstream 68bp
chr19 4475339 4475339 1 + C T BLCA 4475343 + 4475323 4475363 41 ATCTTTTTCTTTGGCACACACGAAACGTAAGTGTCCCCTTC ATCTTTTTCTTTGGCATACACGAAACGTAAGTGTCCCCTTC < 41bp 1 0.595878384780628 1 0.277012974023819 experiment 0.808243230438745 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4475343 chr19:4475339 nonsynonymous SNV 0.849 3 17 hm5C_associated_SNPs_16319 0 0 1 0 2 HDGFL2 chr19:4475348 5'GT 4475348 Upstream 10bp
chr19 4475339 4475339 1 + C T BLCA 4475348 + 4475328 4475368 41 TTTCTTTGGCACACACGAAACGTAAGTGTCCCCTTCTGGGG TTTCTTTGGCATACACGAAACGTAAGTGTCCCCTTCTGGGG < 41bp 1 0.400579411037548 1 0.100457578897476 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4475348 chr19:4475339 nonsynonymous SNV 0.849 3 12 hm5C_associated_SNPs_16320 0 0 1 0 2 HDGFL2 chr19:4475272 3'AG 4475272 Downstream 68bp
chr19 4475339 4475339 1 + C T BLCA 4475348 + 4475328 4475368 41 TTTCTTTGGCACACACGAAACGTAAGTGTCCCCTTCTGGGG TTTCTTTGGCATACACGAAACGTAAGTGTCCCCTTCTGGGG < 41bp 1 0.400579411037548 1 0.100457578897476 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4475348 chr19:4475339 nonsynonymous SNV 0.849 3 12 hm5C_associated_SNPs_16320 0 0 1 0 2 HDGFL2 chr19:4475348 5'GT 4475348 Upstream 10bp
chr19 57795979 57795979 1 + G A BLCA 57795986 + 57795966 57796006 41 GTGGGGGCAGTTGGACGTGACCCAGAGGGCCTTGTACGTGG GTGGGGGCAGTTGAACGTGACCCAGAGGGCCTTGTACGTGG < 41bp 1 0.628821021019773 1 0.0922248065471649 experiment 0.742357957960454 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF460 ENSG00000197714 CDS Human protein_coding chr19:57795986 chr19:57795979 nonsynonymous SNV 0.957 1 14 hm5C_associated_SNPs_16321 0 0 1 0 2 ZNF460 chr19:57795919 3'AG 57795919 Downstream 61bp
chr19 57795979 57795979 1 + G A BLCA 57795986 + 57795966 57796006 41 GTGGGGGCAGTTGGACGTGACCCAGAGGGCCTTGTACGTGG GTGGGGGCAGTTGAACGTGACCCAGAGGGCCTTGTACGTGG < 41bp 1 0.628821021019773 1 0.0922248065471649 experiment 0.742357957960454 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF460 ENSG00000197714 CDS Human protein_coding chr19:57795986 chr19:57795979 nonsynonymous SNV 0.957 1 14 hm5C_associated_SNPs_16321 0 0 1 0 2 ZNF460 chr19:57796045 5'GT 57796045 Upstream 67bp
chr11 66050541 66050541 1 + C G BLCA 66050523 + 66050503 66050543 41 CAGCTGGTGGTCCCAGAATACTCCATCCACGGCCTCTTCTG CAGCTGGTGGTCCCAGAATACTCCATCCACGGCCTCTTGTG < 41bp 1 0.736757933906634 1 0.915665864944458 experiment 0.526484132186732 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CNIH2 ENSG00000174871 CDS Human protein_coding chr11:66050523 chr11:66050541 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_16322 0 0 1 2 2 CNIH2 chr11:66050506 3'AG 66050506 Downstream 36bp
chr11 66050541 66050541 1 + C G BLCA 66050523 + 66050503 66050543 41 CAGCTGGTGGTCCCAGAATACTCCATCCACGGCCTCTTCTG CAGCTGGTGGTCCCAGAATACTCCATCCACGGCCTCTTGTG < 41bp 1 0.736757933906634 1 0.915665864944458 experiment 0.526484132186732 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CNIH2 ENSG00000174871 CDS Human protein_coding chr11:66050523 chr11:66050541 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_16322 0 0 1 2 2 CNIH2 chr11:66050618 5'GT 66050618 Upstream 78bp
chr12 105519872 105519872 1 + C T BLCA 105519876 + 105519856 105519896 41 ATTTGCACATAGTATTCGGTCAATTTTTGCAAATGTAGAAG ATTTGCACATAGTATTTGGTCAATTTTTGCAAATGTAGAAG < 41bp 1 0.197733010377739 1 0.0829561948776245 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519876 chr12:105519872 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_16323 0 0 1 0 2 WASHC4 chr12:105519782 3'AG 105519782 Downstream 91bp
chr12 105519872 105519872 1 + C T BLCA 105519876 + 105519856 105519896 41 ATTTGCACATAGTATTCGGTCAATTTTTGCAAATGTAGAAG ATTTGCACATAGTATTTGGTCAATTTTTGCAAATGTAGAAG < 41bp 1 0.197733010377739 1 0.0829561948776245 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519876 chr12:105519872 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_16323 0 0 1 0 2 WASHC4 chr12:105519905 5'GT 105519905 Upstream 34bp
chr12 105519872 105519872 1 + C T BLCA 105519885 + 105519865 105519905 41 TAGTATTCGGTCAATTTTTGCAAATGTAGAAGCCAAACTTG TAGTATTTGGTCAATTTTTGCAAATGTAGAAGCCAAACTTG < 41bp 1 0.368419035651079 1 0.263281285762787 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519885 chr12:105519872 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_16324 0 0 1 0 2 WASHC4 chr12:105519782 3'AG 105519782 Downstream 91bp
chr12 105519872 105519872 1 + C T BLCA 105519885 + 105519865 105519905 41 TAGTATTCGGTCAATTTTTGCAAATGTAGAAGCCAAACTTG TAGTATTTGGTCAATTTTTGCAAATGTAGAAGCCAAACTTG < 41bp 1 0.368419035651079 1 0.263281285762787 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519885 chr12:105519872 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_16324 0 0 1 0 2 WASHC4 chr12:105519905 5'GT 105519905 Upstream 34bp
chrX 153696528 153696528 1 + C G BLCA 153696529 + 153696509 153696549 41 ACGCCGTGCGCGTGCTCTTCCCGGGCATCGAGGCCCACCCG ACGCCGTGCGCGTGCTCTTGCCGGGCATCGAGGCCCACCCG < 41bp 1 0.603683349157679 1 0.905939936637878 experiment 0.792633301684642 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696529 chrX:153696528 nonsynonymous SNV 0.988 4 20 hm5C_associated_SNPs_16325 0 0 0 0 1 PLXNA3 chrX:153696567 5'GT 153696567 Upstream 40bp
chrX 153696528 153696528 1 + C G BLCA 153696537 + 153696517 153696557 41 CGCGTGCTCTTCCCGGGCATCGAGGCCCACCCGGTGCTCAA CGCGTGCTCTTGCCGGGCATCGAGGCCCACCCGGTGCTCAA < 41bp 1 0.681949179789123 1 0.972847104072571 experiment 0.636101640421755 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696537 chrX:153696528 nonsynonymous SNV 0.988 4 12 hm5C_associated_SNPs_16326 0 0 0 0 1 PLXNA3 chrX:153696567 5'GT 153696567 Upstream 40bp
chr3 184039813 184039813 1 + G C BLCA 184039793 + 184039773 184039813 41 AGCAGGAGAAGCAGGAGAAGCTGAGAGTGAGAAAGGAGGAG AGCAGGAGAAGCAGGAGAAGCTGAGAGTGAGAAAGGAGGAC < 41bp 1 0.556079292545875 1 0.39464282989502 experiment 0.887841414908251 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184039793 chr3:184039813 nonsynonymous SNV 0.993 2 41 hm5C_associated_SNPs_16327 0 0 1 0 1 EIF4G1 chr3:184039891 5'GT 184039891 Upstream 79bp
chr20 37150306 37150306 1 + G C BLCA 37150300 + 37150280 37150320 41 CTGTGTAGGATTTTTTGTAGCAAGAAGACTGGAGAAGAGAT CTGTGTAGGATTTTTTGTAGCAAGAACACTGGAGAAGAGAT < 41bp 1 0.529492931654174 1 0.581181883811951 experiment 0.941014136691652 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37150300 chr20:37150306 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_16337 0 0 1 0 1 RALGAPB chr20:37150341 5'GT 37150341 Upstream 36bp
chr3 148714612 148714612 1 + C A BLCA 148714596 + 148714576 148714616 41 AGCACCAGACCCAGGGTGGCCTGACTGCTTCAATTCCGGAG AGCACCAGACCCAGGGTGGCCTGACTGCTTCAATTCAGGAG < 41bp 1 0.404711666856771 1 0.383253812789917 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GYG1 ENSG00000163754 CDS Human protein_coding chr3:148714596 chr3:148714612 synonymous SNV . 0 37 hm5C_associated_SNPs_16339 0 0 1 0 3 GYG1 chr3:148714529 3'AG 148714529 Downstream 84bp
chr3 148714612 148714612 1 + C A BLCA 148714596 + 148714576 148714616 41 AGCACCAGACCCAGGGTGGCCTGACTGCTTCAATTCCGGAG AGCACCAGACCCAGGGTGGCCTGACTGCTTCAATTCAGGAG < 41bp 1 0.404711666856771 1 0.383253812789917 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GYG1 ENSG00000163754 CDS Human protein_coding chr3:148714596 chr3:148714612 synonymous SNV . 0 37 hm5C_associated_SNPs_16339 0 0 1 0 3 GYG1 chr3:148714679 5'GT 148714679 Upstream 68bp
chr3 148714612 148714612 1 + C A BLCA 148714596 + 148714576 148714616 41 AGCACCAGACCCAGGGTGGCCTGACTGCTTCAATTCCGGAG AGCACCAGACCCAGGGTGGCCTGACTGCTTCAATTCAGGAG < 41bp 1 0.404711666856771 1 0.383253812789917 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GYG1 ENSG00000163754 CDS Human protein_coding chr3:148714596 chr3:148714612 synonymous SNV . 0 37 hm5C_associated_SNPs_16339 0 0 1 0 3 GYG1 chr3:148714691 5'GT 148714691 Upstream 80bp
chr2 101622832 101622832 1 + G A BLCA 101622840 + 101622820 101622860 41 ACAGTCAATGTGGATGAGAACTAATCGCTGATCGTCAGATC ACAGTCAATGTGAATGAGAACTAATCGCTGATCGTCAGATC < 41bp 1 0.230150784588812 1 0.0894710421562195 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622840 chr2:101622832 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_16344 0 0 1 0 1 RPL31 chr2:101622812 3'AG 101622812 Downstream 21bp
chr3 184045027 184045027 1 + G A BLCA 184045016 + 184044996 184045036 41 TCTTCCAGGAGTAGCTTGAGCCGAGAACGAGGCGAGAAAGC TCTTCCAGGAGTAGCTTGAGCCGAGAACGAGACGAGAAAGC < 41bp 1 0.316368330678877 1 0.499772608280182 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184045016 chr3:184045027 nonsynonymous SNV 0.998 1 32 hm5C_associated_SNPs_16345 0 0 1 0 1 EIF4G1 chr3:184045004 3'AG 184045004 Downstream 24bp
chr3 183854514 183854514 1 + G T BLCA 183854500 + 183854480 183854520 41 TGTCTTTTGTTGCTGGAAAGCTGCTCAAATCAAAGAACATT TGTCTTTTGTTGCTGGAAAGCTGCTCAAATCAAATAACATT < 41bp 1 0.372673129440904 1 0.399251401424408 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183854500 chr3:183854514 stopgain 1.000 1 35 hm5C_associated_SNPs_16347 0 0 1 0 1 EIF2B5 chr3:183854524 5'GT 183854524 Upstream 11bp
chr15 63009828 63009828 1 + G A BLCA 63009833 + 63009813 63009853 41 CATCGCCGCCTCCCAGAATGCAGCTGTTTCCAACAAGAACC CATCGCCGCCTCCCAAAATGCAGCTGTTTCCAACAAGAACC < 41bp 1 0.292510736303573 1 0.097975105047226 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63009833 chr15:63009828 synonymous SNV . 0 16 hm5C_associated_SNPs_16348 0 0 0 0 2 TLN2 chr15:63009775 3'AG 63009775 Downstream 54bp
chr15 63009828 63009828 1 + G A BLCA 63009833 + 63009813 63009853 41 CATCGCCGCCTCCCAGAATGCAGCTGTTTCCAACAAGAACC CATCGCCGCCTCCCAAAATGCAGCTGTTTCCAACAAGAACC < 41bp 1 0.292510736303573 1 0.097975105047226 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63009833 chr15:63009828 synonymous SNV . 0 16 hm5C_associated_SNPs_16348 0 0 0 0 2 TLN2 chr15:63009888 5'GT 63009888 Upstream 61bp
chr15 63009828 63009828 1 + G A BLCA 63009836 + 63009816 63009856 41 CGCCGCCTCCCAGAATGCAGCTGTTTCCAACAAGAACCCTG CGCCGCCTCCCAAAATGCAGCTGTTTCCAACAAGAACCCTG < 41bp 1 0.059714522157145 1 0.0267840623855591 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63009836 chr15:63009828 synonymous SNV . 0 13 hm5C_associated_SNPs_16349 0 0 0 0 2 TLN2 chr15:63009775 3'AG 63009775 Downstream 54bp
chr15 63009828 63009828 1 + G A BLCA 63009836 + 63009816 63009856 41 CGCCGCCTCCCAGAATGCAGCTGTTTCCAACAAGAACCCTG CGCCGCCTCCCAAAATGCAGCTGTTTCCAACAAGAACCCTG < 41bp 1 0.059714522157145 1 0.0267840623855591 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63009836 chr15:63009828 synonymous SNV . 0 13 hm5C_associated_SNPs_16349 0 0 0 0 2 TLN2 chr15:63009888 5'GT 63009888 Upstream 61bp
chr20 44526704 44526704 1 + G A BLCA 44526703 + 44526683 44526723 41 GACAGCGGGGAGCAGATTGCCGGCTTCGTGAAGGAGTTCTC GACAGCGGGGAGCAGATTGCCAGCTTCGTGAAGGAGTTCTC < 41bp 1 0.65196425486132 1 0.739144325256348 experiment 0.696071490277359 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44526703 chr20:44526704 nonsynonymous SNV 0.366 5 22 hm5C_associated_SNPs_16351 1 0 1 0 2 CTSA chr20:44526644 3'AG 44526644 Downstream 61bp
chr20 44526704 44526704 1 + G A BLCA 44526703 + 44526683 44526723 41 GACAGCGGGGAGCAGATTGCCGGCTTCGTGAAGGAGTTCTC GACAGCGGGGAGCAGATTGCCAGCTTCGTGAAGGAGTTCTC < 41bp 1 0.65196425486132 1 0.739144325256348 experiment 0.696071490277359 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44526703 chr20:44526704 nonsynonymous SNV 0.366 5 22 hm5C_associated_SNPs_16351 1 0 1 0 2 CTSA chr20:44526748 5'GT 44526748 Upstream 45bp
chr5 43650630 43650630 1 + C A BLCA 43650617 + 43650597 43650637 41 GGTTGGCACTGATGGGAGGACATTTGTATCCTTCCACAACT GGTTGGCACTGATGGGAGGACATTTGTATCCTTACACAACT < 41bp 1 0.144890663156397 1 0.0307874977588654 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43650617 chr5:43650630 nonsynonymous SNV 0.997 1 34 hm5C_associated_SNPs_16352 0 0 1 0 2 NNT chr5:43650579 3'AG 43650579 Downstream 52bp
chr5 43650630 43650630 1 + C A BLCA 43650617 + 43650597 43650637 41 GGTTGGCACTGATGGGAGGACATTTGTATCCTTCCACAACT GGTTGGCACTGATGGGAGGACATTTGTATCCTTACACAACT < 41bp 1 0.144890663156397 1 0.0307874977588654 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43650617 chr5:43650630 nonsynonymous SNV 0.997 1 34 hm5C_associated_SNPs_16352 0 0 1 0 2 NNT chr5:43650689 5'GT 43650689 Upstream 60bp
chr9 137593102 137593102 1 + C T BLCA 137593086 + 137593066 137593106 41 CTCGACTGTAAAAAGAAGACCACCAAATTCCTCGACCGCAG CTCGACTGTAAAAAGAAGACCACCAAATTCCTCGACTGCAG < 41bp 1 0.296268796488844 1 0.136741876602173 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137593086 chr9:137593102 nonsynonymous SNV 0.434 3 37 hm5C_associated_SNPs_16353 0 0 1 0 2 COL5A1 chr9:137593017 3'AG 137593017 Downstream 86bp
chr9 137593102 137593102 1 + C T BLCA 137593086 + 137593066 137593106 41 CTCGACTGTAAAAAGAAGACCACCAAATTCCTCGACCGCAG CTCGACTGTAAAAAGAAGACCACCAAATTCCTCGACTGCAG < 41bp 1 0.296268796488844 1 0.136741876602173 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137593086 chr9:137593102 nonsynonymous SNV 0.434 3 37 hm5C_associated_SNPs_16353 0 0 1 0 2 COL5A1 chr9:137593179 5'GT 137593179 Upstream 78bp
chr2 55461976 55461976 1 + C G BLCA 55461971 + 55461951 55461991 41 ATTCTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGA ATTCTTCCATTAACAGGAGTCTACTGTTCATCTTGTGTTGA < 41bp 1 0.249156886017491 1 0.108326494693756 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461971 chr2:55461976 nonsynonymous SNV 0.997 2 26 hm5C_associated_SNPs_16354 0 0 1 2 1 RPS27A chr2:55461967 3'AG 55461967 Downstream 10bp
chr2 55461976 55461976 1 + C G BLCA 55461974 + 55461954 55461994 41 CTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGAC CTTCCATTAACAGGAGTCTACTGTTCATCTTGTGTTGAGAC < 41bp 1 0.152484952873635 1 0.174960434436798 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461974 chr2:55461976 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_16355 0 0 1 2 1 RPS27A chr2:55461967 3'AG 55461967 Downstream 10bp
chr2 55461976 55461976 1 + C G BLCA 55461979 + 55461959 55461999 41 ATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGT ATTAACAGGAGTCTACTGTTCATCTTGTGTTGAGACTTCGT < 41bp 1 0.169259191766767 1 0.0319207012653351 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461979 chr2:55461976 nonsynonymous SNV 0.997 2 18 hm5C_associated_SNPs_16356 0 0 1 2 1 RPS27A chr2:55461967 3'AG 55461967 Downstream 10bp
chr19 10394842 10394842 1 + G C BLCA 10394840 + 10394820 10394860 41 TCCACCTGGCACTGGGGGACCAGAGGTTGAACCCCACAGTC TCCACCTGGCACTGGGGGACCACAGGTTGAACCCCACAGTC < 41bp 1 0.75864475505737 1 0.583903431892395 experiment 0.48271048988526 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ICAM1 ENSG00000090339 CDS Human protein_coding chr19:10394840 chr19:10394842 nonsynonymous SNV 0.008 0 23 hm5C_associated_SNPs_16357 0 0 1 0 1 ICAM1 chr19:10394805 3'AG 10394805 Downstream 38bp
chr1 26772917 26772917 1 + A T BLCA 26772901 + 26772881 26772921 41 AGCTGATTGCACAAGCTGTACAGGCCACGAAGAACTACAAC AGCTGATTGCACAAGCTGTACAGGCCACGAAGAACTTCAAC < 41bp 1 0.397729568816292 1 0.802390933036804 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26772901 chr1:26772917 nonsynonymous SNV 0.998 1 37 hm5C_associated_SNPs_16358 0 0 0 0 1 DHDDS chr1:26772923 5'GT 26772923 Upstream 7bp
chr1 26772917 26772917 1 + A T BLCA 26772908 + 26772888 26772928 41 TGCACAAGCTGTACAGGCCACGAAGAACTACAACAAGTAAG TGCACAAGCTGTACAGGCCACGAAGAACTTCAACAAGTAAG < 41bp 1 0.25672715974638 1 0.426350861787796 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26772908 chr1:26772917 nonsynonymous SNV 0.998 1 30 hm5C_associated_SNPs_16359 0 0 0 0 1 DHDDS chr1:26772923 5'GT 26772923 Upstream 7bp
chr17 25937178 25937178 1 + G A BLCA 25937195 + 25937175 25937215 41 GACGAGGATCAGCTGCCATTCTCCAAAGCTGCTGATGTCTA GACAAGGATCAGCTGCCATTCTCCAAAGCTGCTGATGTCTA < 41bp 1 0.772854267296846 1 0.971749424934387 experiment 0.454291465406308 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control KSR1 ENSG00000141068 CDS Human protein_coding chr17:25937195 chr17:25937178 nonsynonymous SNV 0.993 3 4 hm5C_associated_SNPs_16360 0 0 1 0 2 KSR1 chr17:25937093 3'AG 25937093 Downstream 86bp
chr17 25937178 25937178 1 + G A BLCA 25937195 + 25937175 25937215 41 GACGAGGATCAGCTGCCATTCTCCAAAGCTGCTGATGTCTA GACAAGGATCAGCTGCCATTCTCCAAAGCTGCTGATGTCTA < 41bp 1 0.772854267296846 1 0.971749424934387 experiment 0.454291465406308 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control KSR1 ENSG00000141068 CDS Human protein_coding chr17:25937195 chr17:25937178 nonsynonymous SNV 0.993 3 4 hm5C_associated_SNPs_16360 0 0 1 0 2 KSR1 chr17:25937224 5'GT 25937224 Upstream 47bp
chr22 44332964 44332964 1 + C T BLCA 44332984 + 44332964 44333004 41 CATCCTCAGAAGGGATGGATCCTGAGGTCGCCATGCCCAGC TATCCTCAGAAGGGATGGATCCTGAGGTCGCCATGCCCAGC < 41bp 1 0.634664422634449 1 0.096609503030777 experiment 0.730671154731102 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44332984 chr22:44332964 nonsynonymous SNV 0.000 0 1 hm5C_associated_SNPs_16361 0 0 1 0 1 PNPLA3 chr22:44332931 3'AG 44332931 Downstream 34bp
chr10 17277194 17277194 1 + T C BLCA 17277176 + 17277156 17277196 41 CACCCCCTGCAGAATGAGTCCCTGGAACGCCAGATGCGTGA CACCCCCTGCAGAATGAGTCCCTGGAACGCCAGATGCGCGA < 41bp 1 0.149272617948908 1 0.116398513317108 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277176 chr10:17277194 synonymous SNV . 0 39 hm5C_associated_SNPs_16362 0 0 1 0 1 VIM chr10:17277168 3'AG 17277168 Downstream 27bp
chr10 17277194 17277194 1 + T C BLCA 17277185 + 17277165 17277205 41 CAGAATGAGTCCCTGGAACGCCAGATGCGTGAAATGGAAGA CAGAATGAGTCCCTGGAACGCCAGATGCGCGAAATGGAAGA < 41bp 1 0.470472325807158 1 0.604159235954285 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277185 chr10:17277194 synonymous SNV . 0 30 hm5C_associated_SNPs_16363 0 0 1 0 1 VIM chr10:17277168 3'AG 17277168 Downstream 27bp
chr3 191074896 191074896 1 + C T BLCA 191074906 + 191074886 191074926 41 ATTTTGCTGTCCTGGAGGACCACACCCTGGCTCACAGCCTG ATTTTGCTGTTCTGGAGGACCACACCCTGGCTCACAGCCTG < 41bp 1 0.454568717191343 1 0.329359233379364 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CCDC50 ENSG00000152492 CDS Human protein_coding chr3:191074906 chr3:191074896 synonymous SNV . 0 11 hm5C_associated_SNPs_16364 0 0 1 0 1 CCDC50 chr3:191074877 3'AG 191074877 Downstream 20bp
chr11 108206598 108206598 1 + T A BLCA 108206601 + 108206581 108206621 41 GACCTGAGACAAGATGCTGTCATGCAACAGGTCTTCCAGAT GACCTGAGACAAGATGCAGTCATGCAACAGGTCTTCCAGAT < 41bp 1 0.18674842000639 1 0.236451596021652 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108206601 chr11:108206598 synonymous SNV . 0 18 hm5C_associated_SNPs_16366 0 0 1 0 2 ATM chr11:108206572 3'AG 108206572 Downstream 27bp
chr11 108206598 108206598 1 + T A BLCA 108206601 + 108206581 108206621 41 GACCTGAGACAAGATGCTGTCATGCAACAGGTCTTCCAGAT GACCTGAGACAAGATGCAGTCATGCAACAGGTCTTCCAGAT < 41bp 1 0.18674842000639 1 0.236451596021652 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108206601 chr11:108206598 synonymous SNV . 0 18 hm5C_associated_SNPs_16366 0 0 1 0 2 ATM chr11:108206688 5'GT 108206688 Upstream 91bp
chr20 49196247 49196247 1 + G A BLCA 49196243 + 49196223 49196263 41 CTTGCTGCTCTTTCAAGGATCAGTGGAAGGAGCTTTCCCAC CTTGCTGCTCTTTCAAGGATCAGTAGAAGGAGCTTTCCCAC < 41bp 1 0.710324910839269 1 0.658502340316772 experiment 0.579350178321461 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49196243 chr20:49196247 stopgain 0.999 1 25 hm5C_associated_SNPs_16369 0 0 1 0 1 PTPN1 chr20:49196240 3'AG 49196240 Downstream 8bp
chr6 7566637 7566637 1 + G C BLCA 7566648 + 7566628 7566668 41 GAAGTTAAAGAAAAAGAGCTCAATAAGCTGAAACAAGAAAG GAAGTTAAACAAAAAGAGCTCAATAAGCTGAAACAAGAAAG < 41bp 1 0.143717568459191 1 0.174824416637421 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7566648 chr6:7566637 nonsynonymous SNV 1.000 5 10 hm5C_associated_SNPs_16371 1 0 1 0 2 DSP chr6:7566610 3'AG 7566610 Downstream 28bp
chr6 7566637 7566637 1 + G C BLCA 7566648 + 7566628 7566668 41 GAAGTTAAAGAAAAAGAGCTCAATAAGCTGAAACAAGAAAG GAAGTTAAACAAAAAGAGCTCAATAAGCTGAAACAAGAAAG < 41bp 1 0.143717568459191 1 0.174824416637421 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7566648 chr6:7566637 nonsynonymous SNV 1.000 5 10 hm5C_associated_SNPs_16371 1 0 1 0 2 DSP chr6:7566714 5'GT 7566714 Upstream 78bp
chr1 144598726 144598726 1 + A C BLCA 144598720 + 144598700 144598740 41 GATGTAGAAACTTCCCCATTCGGTGCACCAAGAGCAACCTC GATGTAGAAACTTCCCCATTCGGTGCCCCAAGAGCAACCTC < 41bp 1 0.259777367004075 1 0.697445392608643 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBPF8 ENSG00000225241 ncRNA_exonic Human other chr1:144598720 chr1:144598726 . . 0 27 hm5C_associated_SNPs_16372 0 0 1 0 1 NBPF8 chr1:144598780 5'GT 144598780 Upstream 55bp
chr3 170009715 170009715 1 + G C BLCA 170009695 + 170009675 170009715 41 TTCTGTGGTACTCCTAATTACATTGCTCCTGAAATTTTAAG TTCTGTGGTACTCCTAATTACATTGCTCCTGAAATTTTAAC < 41bp 1 0.102169429991745 1 0.0453120172023773 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:170009695 chr3:170009715 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_16373 0 0 0 0 2 PRKCI chr3:170009642 3'AG 170009642 Downstream 74bp
chr3 170009715 170009715 1 + G C BLCA 170009695 + 170009675 170009715 41 TTCTGTGGTACTCCTAATTACATTGCTCCTGAAATTTTAAG TTCTGTGGTACTCCTAATTACATTGCTCCTGAAATTTTAAC < 41bp 1 0.102169429991745 1 0.0453120172023773 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:170009695 chr3:170009715 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_16373 0 0 0 0 2 PRKCI chr3:170009729 5'GT 170009729 Upstream 15bp
chr17 79411485 79411485 1 + G A BLCA 79411468 + 79411448 79411488 41 CGAGCAGCTGCCCTGGGGACCTGGCCCCCCACCTCATGATG CGAGCAGCTGCCCTGGGGACCTGGCCCCCCACCTCATAATG < 41bp 1 0.204850474976257 1 0.550970554351807 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79411468 chr17:79411485 nonsynonymous SNV 0.998 1 38 hm5C_associated_SNPs_16375 0 0 0 0 1 BAHCC1 chr17:79411407 3'AG 79411407 Downstream 79bp
chr10 104129685 104129685 1 + C T BLCA 104129695 + 104129675 104129715 41 GTCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCA GTCTAGTGTTTGGGGCCCATCCACTGAAAACCAAGAGGCCA < 41bp 1 0.216277241381266 1 0.450533211231232 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129695 chr10:104129685 nonsynonymous SNV 0.996 4 11 hm5C_associated_SNPs_16376 0 0 1 0 2 GBF1 chr10:104129618 3'AG 104129618 Downstream 68bp
chr10 104129685 104129685 1 + C T BLCA 104129695 + 104129675 104129715 41 GTCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCA GTCTAGTGTTTGGGGCCCATCCACTGAAAACCAAGAGGCCA < 41bp 1 0.216277241381266 1 0.450533211231232 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129695 chr10:104129685 nonsynonymous SNV 0.996 4 11 hm5C_associated_SNPs_16376 0 0 1 0 2 GBF1 chr10:104129741 5'GT 104129741 Upstream 57bp
chr10 104129685 104129685 1 + C T BLCA 104129696 + 104129676 104129716 41 TCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCAA TCTAGTGTTTGGGGCCCATCCACTGAAAACCAAGAGGCCAA < 41bp 1 0.543029489357408 1 0.684975326061249 experiment 0.913941021285184 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129696 chr10:104129685 nonsynonymous SNV 0.996 4 10 hm5C_associated_SNPs_16377 0 0 1 0 2 GBF1 chr10:104129618 3'AG 104129618 Downstream 68bp
chr10 104129685 104129685 1 + C T BLCA 104129696 + 104129676 104129716 41 TCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCAA TCTAGTGTTTGGGGCCCATCCACTGAAAACCAAGAGGCCAA < 41bp 1 0.543029489357408 1 0.684975326061249 experiment 0.913941021285184 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129696 chr10:104129685 nonsynonymous SNV 0.996 4 10 hm5C_associated_SNPs_16377 0 0 1 0 2 GBF1 chr10:104129741 5'GT 104129741 Upstream 57bp
chr9 100756947 100756947 1 + A T BLCA 100756966 + 100756946 100756986 41 AATGATGGAAAAATTGAGGGCTTAACAGCTGAATTTGTGAA ATTGATGGAAAAATTGAGGGCTTAACAGCTGAATTTGTGAA < 41bp 1 0.178577131334058 1 0.160068809986115 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100756966 chr9:100756947 nonsynonymous SNV 0.995 0 2 hm5C_associated_SNPs_16378 0 0 0 0 1 ANP32B chr9:100756913 3'AG 100756913 Downstream 35bp
chr7 149419541 149419541 1 + G A BLCA 149419527 + 149419507 149419547 41 CAACAGAAACTGCCGACAAACCGTGGCCTACAAGGAAGGAA CAACAGAAACTGCCGACAAACCGTGGCCTACAAGAAAGGAA < 41bp 1 0.152209607969887 1 0.550856471061707 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149419527 chr7:149419541 synonymous SNV . 0 35 hm5C_associated_SNPs_16379 0 0 0 0 1 KRBA1 chr7:149419513 3'AG 149419513 Downstream 29bp
chr11 9463660 9463660 1 + G T BLCA 9463671 + 9463651 9463691 41 TGGTATCAGGCACTGACTCACGGTCTTAATGAAGAACAAAG TGGTATCAGTCACTGACTCACGGTCTTAATGAAGAACAAAG < 41bp 1 0.198003026680993 1 0.172078311443329 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9463671 chr11:9463660 nonsynonymous SNV 0.996 1 10 hm5C_associated_SNPs_16381 0 0 1 0 2 IPO7 chr11:9463628 3'AG 9463628 Downstream 33bp
chr11 9463660 9463660 1 + G T BLCA 9463671 + 9463651 9463691 41 TGGTATCAGGCACTGACTCACGGTCTTAATGAAGAACAAAG TGGTATCAGTCACTGACTCACGGTCTTAATGAAGAACAAAG < 41bp 1 0.198003026680993 1 0.172078311443329 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9463671 chr11:9463660 nonsynonymous SNV 0.996 1 10 hm5C_associated_SNPs_16381 0 0 1 0 2 IPO7 chr11:9463744 5'GT 9463744 Upstream 85bp
chr17 66251937 66251937 1 + C T BLCA 66251944 + 66251924 66251964 41 GGAAGAAGCTGACCGGCGCCCTCTAAACCTTTGCCCTATCT GGAAGAAGCTGACTGGCGCCCTCTAAACCTTTGCCCTATCT < 41bp 1 0.670751530485016 1 0.727237224578857 experiment 0.658496939029968 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control AMZ2 ENSG00000196704 CDS Human protein_coding chr17:66251944 chr17:66251937 nonsynonymous SNV 0.998 4 14 hm5C_associated_SNPs_16382 0 0 1 0 2 AMZ2 chr17:66251841 3'AG 66251841 Downstream 97bp
chr17 66251937 66251937 1 + C T BLCA 66251944 + 66251924 66251964 41 GGAAGAAGCTGACCGGCGCCCTCTAAACCTTTGCCCTATCT GGAAGAAGCTGACTGGCGCCCTCTAAACCTTTGCCCTATCT < 41bp 1 0.670751530485016 1 0.727237224578857 experiment 0.658496939029968 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control AMZ2 ENSG00000196704 CDS Human protein_coding chr17:66251944 chr17:66251937 nonsynonymous SNV 0.998 4 14 hm5C_associated_SNPs_16382 0 0 1 0 2 AMZ2 chr17:66252017 5'GT 66252017 Upstream 81bp
chr1 45243706 45243706 1 + G T BLCA 45243698 + 45243678 45243718 41 GAGGAAGAAGAGATTTTAAACAAAAAACGATCTAAAAAAAT GAGGAAGAAGAGATTTTAAACAAAAAACTATCTAAAAAAAT < 41bp 1 0.421011583985309 1 0.486075788736343 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS8 ENSG00000142937 CDS Human protein_coding chr1:45243698 chr1:45243706 nonsynonymous SNV 0.999 1 29 hm5C_associated_SNPs_16384 0 0 1 0 2 RPS8 chr1:45243672 3'AG 45243672 Downstream 35bp
chr1 45243706 45243706 1 + G T BLCA 45243698 + 45243678 45243718 41 GAGGAAGAAGAGATTTTAAACAAAAAACGATCTAAAAAAAT GAGGAAGAAGAGATTTTAAACAAAAAACTATCTAAAAAAAT < 41bp 1 0.421011583985309 1 0.486075788736343 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS8 ENSG00000142937 CDS Human protein_coding chr1:45243698 chr1:45243706 nonsynonymous SNV 0.999 1 29 hm5C_associated_SNPs_16384 0 0 1 0 2 RPS8 chr1:45243801 5'GT 45243801 Upstream 96bp
chr1 45243706 45243706 1 + G T BLCA 45243709 + 45243689 45243729 41 GATTTTAAACAAAAAACGATCTAAAAAAATTCAGAAGAAAT GATTTTAAACAAAAAACTATCTAAAAAAATTCAGAAGAAAT < 41bp 1 0.402833340074542 1 0.272360861301422 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS8 ENSG00000142937 CDS Human protein_coding chr1:45243709 chr1:45243706 nonsynonymous SNV 0.999 1 18 hm5C_associated_SNPs_16385 0 0 1 0 2 RPS8 chr1:45243672 3'AG 45243672 Downstream 35bp
chr1 45243706 45243706 1 + G T BLCA 45243709 + 45243689 45243729 41 GATTTTAAACAAAAAACGATCTAAAAAAATTCAGAAGAAAT GATTTTAAACAAAAAACTATCTAAAAAAATTCAGAAGAAAT < 41bp 1 0.402833340074542 1 0.272360861301422 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS8 ENSG00000142937 CDS Human protein_coding chr1:45243709 chr1:45243706 nonsynonymous SNV 0.999 1 18 hm5C_associated_SNPs_16385 0 0 1 0 2 RPS8 chr1:45243801 5'GT 45243801 Upstream 96bp
chr2 30756161 30756161 1 + C G BLCA 30756147 + 30756127 30756167 41 TCAGATTGGAGAAAATTTGCCTCAAAGCGAGTCTCAAAGGT TCAGATTGGAGAAAATTTGCCTCAAAGCGAGTCTGAAAGGT < 41bp 1 0.679973561492581 1 0.715710520744324 experiment 0.640052877014837 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LCLAT1 ENSG00000172954 CDS Human protein_coding chr2:30756147 chr2:30756161 synonymous SNV . 0 35 hm5C_associated_SNPs_16386 0 0 1 0 1 LCLAT1 chr2:30756180 5'GT 30756180 Upstream 20bp
chr19 18543829 18543829 1 + C T BLCA 18543840 + 18543820 18543860 41 GAACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTG GAACCCCATTGGGCAGGGCGCCGGCAGGGCTAATGTGAGTG < 41bp 1 0.157117218735885 1 0.408476740121841 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543840 chr19:18543829 synonymous SNV . 0 10 hm5C_associated_SNPs_16387 0 0 1 0 2 SSBP4 chr19:18543783 3'AG 18543783 Downstream 47bp
chr19 18543829 18543829 1 + C T BLCA 18543840 + 18543820 18543860 41 GAACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTG GAACCCCATTGGGCAGGGCGCCGGCAGGGCTAATGTGAGTG < 41bp 1 0.157117218735885 1 0.408476740121841 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543840 chr19:18543829 synonymous SNV . 0 10 hm5C_associated_SNPs_16387 0 0 1 0 2 SSBP4 chr19:18543853 5'GT 18543853 Upstream 25bp
chr19 18543829 18543829 1 + C T BLCA 18543841 + 18543821 18543861 41 AACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTGG AACCCCATTGGGCAGGGCGCCGGCAGGGCTAATGTGAGTGG < 41bp 1 0.688306306760948 1 0.545497298240662 experiment 0.623387386478105 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543841 chr19:18543829 synonymous SNV . 0 9 hm5C_associated_SNPs_16388 0 0 1 0 2 SSBP4 chr19:18543783 3'AG 18543783 Downstream 47bp
chr19 18543829 18543829 1 + C T BLCA 18543841 + 18543821 18543861 41 AACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTGG AACCCCATTGGGCAGGGCGCCGGCAGGGCTAATGTGAGTGG < 41bp 1 0.688306306760948 1 0.545497298240662 experiment 0.623387386478105 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543841 chr19:18543829 synonymous SNV . 0 9 hm5C_associated_SNPs_16388 0 0 1 0 2 SSBP4 chr19:18543853 5'GT 18543853 Upstream 25bp
chr11 85977176 85977176 1 + C T BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTTTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA < 41bp 1 0.159370842293377 1 0.111149370670319 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977176 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_16390 0 0 1 0 2 EED chr11:85977125 3'AG 85977125 Downstream 52bp
chr11 85977176 85977176 1 + C T BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTTTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA < 41bp 1 0.159370842293377 1 0.111149370670319 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977176 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_16390 0 0 1 0 2 EED chr11:85977258 5'GT 85977258 Upstream 83bp
chr13 48936983 48936983 1 + C T BLCA 48936995 + 48936975 48937015 41 GTTCACCTCGAACACCCAGGCGAGGTCAGAACAGGAGTGCA GTTCACCTTGAACACCCAGGCGAGGTCAGAACAGGAGTGCA < 41bp 1 0.641271483930132 1 0.854509949684143 experiment 0.717457032139735 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RB1 ENSG00000139687 CDS Human protein_coding chr13:48936995 chr13:48936983 stopgain 1.000 1 9 hm5C_associated_SNPs_16391 1 0 0 0 1 RB1 chr13:48936951 3'AG 48936951 Downstream 33bp
chr1 39824525 39824525 1 + G C BLCA 39824528 + 39824508 39824548 41 ACCCTGGAGTTCTCCAGGAGCAGCTTGCAACAACAAAGGTA ACCCTGGAGTTCTCCAGCAGCAGCTTGCAACAACAAAGGTA < 41bp 1 0.158554404500056 1 0.304398864507675 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39824528 chr1:39824525 nonsynonymous SNV 0.559 0 18 hm5C_associated_SNPs_16392 0 0 1 0 1 MACF1 chr1:39824545 5'GT 39824545 Upstream 21bp
chr1 227171804 227171804 1 + G A BLCA 227171811 + 227171791 227171831 41 CCAGGGACCTGCTGAAGGGCCACCCCTTCTTCTATGTGCCT CCAGGGACCTGCTAAAGGGCCACCCCTTCTTCTATGTGCCT < 41bp 1 0.155121043738025 1 0.0899141430854797 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COQ8A ENSG00000163050 CDS Human protein_coding chr1:227171811 chr1:227171804 synonymous SNV . 0 14 hm5C_associated_SNPs_16395 0 0 1 0 1 COQ8A chr1:227171795 3'AG 227171795 Downstream 10bp
chr11 120317138 120317138 1 + G A BLCA 120317136 + 120317116 120317156 41 GAGAAGACCTGAGCTCATTCCTGAGGATCTGCATCGCCACT GAGAAGACCTGAGCTCATTCCTAAGGATCTGCATCGCCACT < 41bp 1 0.26774311976998 1 0.418781518936157 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120317136 chr11:120317138 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_16398 0 0 1 0 2 ARHGEF12 chr11:120317112 3'AG 120317112 Downstream 27bp
chr11 120317138 120317138 1 + G A BLCA 120317136 + 120317116 120317156 41 GAGAAGACCTGAGCTCATTCCTGAGGATCTGCATCGCCACT GAGAAGACCTGAGCTCATTCCTAAGGATCTGCATCGCCACT < 41bp 1 0.26774311976998 1 0.418781518936157 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120317136 chr11:120317138 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_16398 0 0 1 0 2 ARHGEF12 chr11:120317217 5'GT 120317217 Upstream 80bp
chr1 202977800 202977800 1 + C T BLCA 202977810 + 202977790 202977830 41 GGAAGCCTCTCAGGTTCCTGCAGAGGAAGCTCTTTCTGGGG GGAAGCCTCTTAGGTTCCTGCAGAGGAAGCTCTTTCTGGGG < 41bp 1 0.734398526294829 1 0.591252505779266 experiment 0.531202947410341 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM183A;TMEM183B ENSG00000163444 CDS Human protein_coding chr1:202977810 chr1:202977800 stopgain 0.999 0 11 hm5C_associated_SNPs_16399 0 0 0 0 1 TMEM183A;TMEM183B chr1:202977771 3'AG 202977771 Downstream 30bp
chr18 74625763 74625763 1 + G A BLCA 74625764 + 74625744 74625784 41 TGAAGCAGCATGTGCGGTCGCACACCGGGGAAAAGCCCTAC TGAAGCAGCATGTGCGGTCACACACCGGGGAAAAGCCCTAC < 41bp 1 0.36212741968115 1 0.0385542213916779 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74625764 chr18:74625763 synonymous SNV . 0 20 hm5C_associated_SNPs_16400 0 0 0 0 2 ZNF236 chr18:74625703 3'AG 74625703 Downstream 61bp
chr18 74625763 74625763 1 + G A BLCA 74625764 + 74625744 74625784 41 TGAAGCAGCATGTGCGGTCGCACACCGGGGAAAAGCCCTAC TGAAGCAGCATGTGCGGTCACACACCGGGGAAAAGCCCTAC < 41bp 1 0.36212741968115 1 0.0385542213916779 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74625764 chr18:74625763 synonymous SNV . 0 20 hm5C_associated_SNPs_16400 0 0 0 0 2 ZNF236 chr18:74625854 5'GT 74625854 Upstream 92bp
chr11 67075660 67075660 1 + G A BLCA 67075677 + 67075657 67075697 41 CTGGAGCTGCGCCTGGGGCTCCCCCTCCAGCAGTACCGTGA CTGAAGCTGCGCCTGGGGCTCCCCCTCCAGCAGTACCGTGA < 41bp 1 0.173316523704554 1 0.0954318046569824 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075677 chr11:67075660 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_16404 0 0 1 0 1 SSH3 chr11:67075645 3'AG 67075645 Downstream 16bp
chr6 36569567 36569567 1 + C T BLCA 36569553 + 36569533 36569573 41 AAATCACAAGCCGTCCCGATCCTTCTCTAGGTCTCGTAGGT AAATCACAAGCCGTCCCGATCCTTCTCTAGGTCTTGTAGGT < 41bp 1 0.0240904745715205 1 0.0315025150775909 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36569553 chr6:36569567 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_16405 0 0 1 0 2 SRSF3 chr6:36569485 3'AG 36569485 Downstream 83bp
chr6 36569567 36569567 1 + C T BLCA 36569553 + 36569533 36569573 41 AAATCACAAGCCGTCCCGATCCTTCTCTAGGTCTCGTAGGT AAATCACAAGCCGTCCCGATCCTTCTCTAGGTCTTGTAGGT < 41bp 1 0.0240904745715205 1 0.0315025150775909 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36569553 chr6:36569567 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_16405 0 0 1 0 2 SRSF3 chr6:36569571 5'GT 36569571 Upstream 5bp
chr2 219525710 219525710 1 + G A BLCA 219525721 + 219525701 219525741 41 CCCTTTCAAGATGCCACTTTCAGACTTTATTCTGGCTCTGA CCCTTTCAAAATGCCACTTTCAGACTTTATTCTGGCTCTGA < 41bp 1 0.379146018969179 1 0.16739359498024 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BCS1L ENSG00000074582 UTR5 Human protein_coding chr2:219525721 chr2:219525710 . . 0 10 hm5C_associated_SNPs_16407 0 0 1 0 1 BCS1L chr2:219525662 3'AG 219525662 Downstream 49bp
chr5 132427046 132427046 1 + C T BLCA 132427041 + 132427021 132427061 41 AAATGAGGAGCCAATGGAAACAGATCAGAATGCAAAGGAGG AAATGAGGAGCCAATGGAAACAGATTAGAATGCAAAGGAGG < 41bp 1 0.384663839298913 1 0.501973807811737 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132427041 chr5:132427046 stopgain 0.999 1 26 hm5C_associated_SNPs_16408 0 0 1 0 1 HSPA4 chr5:132427066 5'GT 132427066 Upstream 21bp
chr5 132427046 132427046 1 + C T BLCA 132427053 + 132427033 132427073 41 AATGGAAACAGATCAGAATGCAAAGGAGGAAGAGGTAATCT AATGGAAACAGATTAGAATGCAAAGGAGGAAGAGGTAATCT < 41bp 1 0.540598250132298 1 0.332778781652451 experiment 0.918803499735404 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132427053 chr5:132427046 stopgain 0.999 1 14 hm5C_associated_SNPs_16409 0 0 1 0 1 HSPA4 chr5:132427066 5'GT 132427066 Upstream 21bp
chr17 55055498 55055498 1 + G A BLCA 55055496 + 55055476 55055516 41 GCGCCGGGTCCAGCCTGTTGCTGATGCTGCCGTGCGGTACT GCGCCGGGTCCAGCCTGTTGCTAATGCTGCCGTGCGGTACT < 41bp 1 0.609005430721238 1 0.102101773023605 experiment 0.781989138557525 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCPEP1 ENSG00000121064 UTR5 Human protein_coding chr17:55055496 chr17:55055498 . . 0 23 hm5C_associated_SNPs_16410 0 0 0 0 1 SCPEP1 chr17:55055596 5'GT 55055596 Upstream 99bp
chr19 42796593 42796593 1 + C T BLCA 42796582 + 42796562 42796602 41 TAGGCTTCACCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTG TAGGCTTCACCTCGCTGGGGCCCAGCGGCCCTGCCTTCGTG < 41bp 1 0.0683754921907087 1 0.13810595870018 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796582 chr19:42796593 synonymous SNV . 0 32 hm5C_associated_SNPs_16411 0 0 0 0 1 CIC chr19:42796618 5'GT 42796618 Upstream 26bp
chr19 42796593 42796593 1 + C T BLCA 42796583 + 42796563 42796603 41 AGGCTTCACCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGC AGGCTTCACCTCGCTGGGGCCCAGCGGCCCTGCCTTCGTGC < 41bp 1 0.135285285874647 1 0.502038359642029 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796583 chr19:42796593 synonymous SNV . 0 31 hm5C_associated_SNPs_16412 0 0 0 0 1 CIC chr19:42796618 5'GT 42796618 Upstream 26bp
chr19 42796593 42796593 1 + C T BLCA 42796590 + 42796570 42796610 41 ACCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCT ACCTCGCTGGGGCCCAGCGGCCCTGCCTTCGTGCAGCCCCT < 41bp 1 0.0839667665589673 1 0.18510964512825 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796590 chr19:42796593 synonymous SNV . 0 24 hm5C_associated_SNPs_16413 0 0 0 0 1 CIC chr19:42796618 5'GT 42796618 Upstream 26bp
chr19 42796593 42796593 1 + C T BLCA 42796591 + 42796571 42796611 41 CCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCTG CCTCGCTGGGGCCCAGCGGCCCTGCCTTCGTGCAGCCCCTG < 41bp 1 0.0857528891835719 1 0.192367792129517 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796591 chr19:42796593 synonymous SNV . 0 23 hm5C_associated_SNPs_16414 0 0 0 0 1 CIC chr19:42796618 5'GT 42796618 Upstream 26bp
chr19 42796593 42796593 1 + C T BLCA 42796592 + 42796572 42796612 41 CTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCTGC CTCGCTGGGGCCCAGCGGCCCTGCCTTCGTGCAGCCCCTGC < 41bp 1 0.337208259803771 1 0.0818429589271545 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796592 chr19:42796593 synonymous SNV . 0 22 hm5C_associated_SNPs_16415 0 0 0 0 1 CIC chr19:42796618 5'GT 42796618 Upstream 26bp
chr20 60879624 60879624 1 + C T BLCA 60879621 + 60879601 60879641 41 GCAGGGTCCAAGCGGCTTTTCTTCTGGATGCAGGTATGGGG GCAGGGTCCAAGCGGCTTTTCTTTTGGATGCAGGTATGGGG < 41bp 1 0.100450879233043 1 0.121293812990189 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60879621 chr20:60879624 synonymous SNV . 0 24 hm5C_associated_SNPs_16416 0 0 1 0 1 ADRM1 chr20:60879633 5'GT 60879633 Upstream 10bp
chr1 25889141 25889141 1 + G A BLCA 25889142 + 25889122 25889162 41 TTCCTGTTTTCAGGCACAGGCTGTTACCCTCACCGTAGCCC TTCCTGTTTTCAGGCACAGACTGTTACCCTCACCGTAGCCC < 41bp 1 0.1637955371958 1 0.0711866617202759 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LDLRAP1 ENSG00000157978 CDS Human protein_coding chr1:25889142 chr1:25889141 nonsynonymous SNV 0.922 1 20 hm5C_associated_SNPs_16417 0 0 1 0 2 LDLRAP1 chr1:25889135 3'AG 25889135 Downstream 7bp
chr1 25889141 25889141 1 + G A BLCA 25889142 + 25889122 25889162 41 TTCCTGTTTTCAGGCACAGGCTGTTACCCTCACCGTAGCCC TTCCTGTTTTCAGGCACAGACTGTTACCCTCACCGTAGCCC < 41bp 1 0.1637955371958 1 0.0711866617202759 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LDLRAP1 ENSG00000157978 CDS Human protein_coding chr1:25889142 chr1:25889141 nonsynonymous SNV 0.922 1 20 hm5C_associated_SNPs_16417 0 0 1 0 2 LDLRAP1 chr1:25889207 5'GT 25889207 Upstream 67bp
chr2 32773024 32773024 1 + G A BLCA 32773028 + 32773008 32773048 41 CTTCTGGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAGG CTTCTGGGTGGGATGTAGAACAAGCCTTAACTAAGCAAAGG < 41bp 1 0.180993993980462 1 0.471253275871277 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773028 chr2:32773024 synonymous SNV . 0 17 hm5C_associated_SNPs_16418 0 0 1 0 1 BIRC6 chr2:32773081 5'GT 32773081 Upstream 58bp
chr2 32773024 32773024 1 + G A BLCA 32773033 + 32773013 32773053 41 GGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAGGCTGGA GGGTGGGATGTAGAACAAGCCTTAACTAAGCAAAGGCTGGA < 41bp 1 0.173915092308789 1 0.0848912298679352 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773033 chr2:32773024 synonymous SNV . 0 12 hm5C_associated_SNPs_16419 0 0 1 0 1 BIRC6 chr2:32773081 5'GT 32773081 Upstream 58bp
chr2 32773024 32773024 1 + G A BLCA 32773043 + 32773023 32773063 41 TGGAACAAGCCTTAACTAAGCAAAGGCTGGAAGAGGAACAT TAGAACAAGCCTTAACTAAGCAAAGGCTGGAAGAGGAACAT < 41bp 1 0.163023061129631 1 0.639290690422058 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773043 chr2:32773024 synonymous SNV . 0 2 hm5C_associated_SNPs_16420 0 0 1 0 1 BIRC6 chr2:32773081 5'GT 32773081 Upstream 58bp
chr22 42271620 42271620 1 + G A BLCA 42271638 + 42271618 42271658 41 CAGAATGTCCTTCTGATGTCCCCCCCAGCCTCTGACTCAGG CAAAATGTCCTTCTGATGTCCCCCCCAGCCTCTGACTCAGG < 41bp 1 0.0338788154838602 1 0.045524001121521 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42271638 chr22:42271620 synonymous SNV . 0 3 hm5C_associated_SNPs_16421 0 0 1 0 1 SREBF2 chr22:42271547 3'AG 42271547 Downstream 74bp
chr19 48833652 48833652 1 + C T BLCA 48833670 + 48833650 48833690 41 TTCGCCCTGGCCTGGGTGGCCTTCCCCCTCGCCCTGGTCAG TTTGCCCTGGCCTGGGTGGCCTTCCCCCTCGCCCTGGTCAG < 41bp 1 0.373439534675535 1 0.0389647483825684 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EMP3 ENSG00000142227 CDS Human protein_coding chr19:48833670 chr19:48833652 nonsynonymous SNV 1.000 0 3 hm5C_associated_SNPs_16422 0 0 1 0 1 EMP3 chr19:48833558 3'AG 48833558 Downstream 95bp
chr17 43220896 43220896 1 + C A BLCA 43220912 + 43220892 43220932 41 TCGTCGTCCAGTGGCTCTTCCGAATGTTTCGGACCCAAAAG TCGTAGTCCAGTGGCTCTTCCGAATGTTTCGGACCCAAAAG < 41bp 1 0.416707390391612 1 0.807047367095947 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43220912 chr17:43220896 stopgain 0.978 0 5 hm5C_associated_SNPs_16423 0 0 1 0 1 ACBD4 chr17:43220810 3'AG 43220810 Downstream 87bp
chr14 97342439 97342439 1 + G A BLCA 97342429 + 97342409 97342449 41 GAAGATACGGAATGGTCAAACACACAGACAGAGGAGGCCAT GAAGATACGGAATGGTCAAACACACAGACAAAGGAGGCCAT < 41bp 1 0.538306261397428 1 0.404437154531479 experiment 0.923387477205144 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VRK1 ENSG00000100749 CDS Human protein_coding chr14:97342429 chr14:97342439 nonsynonymous SNV 0.445 0 31 hm5C_associated_SNPs_16424 0 0 1 0 2 VRK1 chr14:97342367 3'AG 97342367 Downstream 73bp
chr14 97342439 97342439 1 + G A BLCA 97342429 + 97342409 97342449 41 GAAGATACGGAATGGTCAAACACACAGACAGAGGAGGCCAT GAAGATACGGAATGGTCAAACACACAGACAAAGGAGGCCAT < 41bp 1 0.538306261397428 1 0.404437154531479 experiment 0.923387477205144 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VRK1 ENSG00000100749 CDS Human protein_coding chr14:97342429 chr14:97342439 nonsynonymous SNV 0.445 0 31 hm5C_associated_SNPs_16424 0 0 1 0 2 VRK1 chr14:97342457 5'GT 97342457 Upstream 19bp
chr22 30038263 30038263 1 + G T BLCA 30038248 + 30038228 30038268 41 CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCTTCCAG < 41bp 1 0.650008692571167 1 0.492617517709732 experiment 0.699982614857666 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30038248 chr22:30038263 nonsynonymous SNV 0.806 4 36 hm5C_associated_SNPs_16425 0 0 1 0 2 NF2 chr22:30038191 3'AG 30038191 Downstream 73bp
chr22 30038263 30038263 1 + G T BLCA 30038248 + 30038228 30038268 41 CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCTTCCAG < 41bp 1 0.650008692571167 1 0.492617517709732 experiment 0.699982614857666 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30038248 chr22:30038263 nonsynonymous SNV 0.806 4 36 hm5C_associated_SNPs_16425 0 0 1 0 2 NF2 chr22:30038274 5'GT 30038274 Upstream 12bp
chr4 169630220 169630220 1 + G A BLCA 169630201 + 169630181 169630221 41 GAGATTTGCACCCTAGTTATCGCTGAGACTTTCCCTGAAGA GAGATTTGCACCCTAGTTATCGCTGAGACTTTCCCTGAAAA < 41bp 1 0.223236958459679 1 0.626985907554626 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PALLD ENSG00000129116 CDS Human protein_coding chr4:169630201 chr4:169630220 nonsynonymous SNV 0.994 3 40 hm5C_associated_SNPs_16427 0 0 1 0 2 PALLD chr4:169630179 3'AG 169630179 Downstream 42bp
chr4 169630220 169630220 1 + G A BLCA 169630201 + 169630181 169630221 41 GAGATTTGCACCCTAGTTATCGCTGAGACTTTCCCTGAAGA GAGATTTGCACCCTAGTTATCGCTGAGACTTTCCCTGAAAA < 41bp 1 0.223236958459679 1 0.626985907554626 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PALLD ENSG00000129116 CDS Human protein_coding chr4:169630201 chr4:169630220 nonsynonymous SNV 0.994 3 40 hm5C_associated_SNPs_16427 0 0 1 0 2 PALLD chr4:169630298 5'GT 169630298 Upstream 79bp
chr19 46202132 46202132 1 + G A BLCA 46202126 + 46202106 46202146 41 CTACAGCCACTTCCCTCGCACGGTCCGCTGGTTCCATCGGC CTACAGCCACTTCCCTCGCACGGTCCACTGGTTCCATCGGC < 41bp 1 0.126799929419906 1 0.925984144210815 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control QPCTL ENSG00000011478 CDS Human protein_coding chr19:46202126 chr19:46202132 nonsynonymous SNV 0.903 1 27 hm5C_associated_SNPs_16428 0 0 1 0 2 QPCTL chr19:46202059 3'AG 46202059 Downstream 74bp
chr19 46202132 46202132 1 + G A BLCA 46202126 + 46202106 46202146 41 CTACAGCCACTTCCCTCGCACGGTCCGCTGGTTCCATCGGC CTACAGCCACTTCCCTCGCACGGTCCACTGGTTCCATCGGC < 41bp 1 0.126799929419906 1 0.925984144210815 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control QPCTL ENSG00000011478 CDS Human protein_coding chr19:46202126 chr19:46202132 nonsynonymous SNV 0.903 1 27 hm5C_associated_SNPs_16428 0 0 1 0 2 QPCTL chr19:46202158 5'GT 46202158 Upstream 27bp
chr11 71946178 71946178 1 + G C BLCA 71946183 + 71946163 71946203 41 AAACCAATTCTGGCTGATATCGAGTACCTGCAGGACCAGCA AAACCAATTCTGGCTCATATCGAGTACCTGCAGGACCAGCA < 41bp 1 0.588828513335593 1 0.789676666259766 experiment 0.822342973328815 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946183 chr11:71946178 nonsynonymous SNV 0.999 4 16 hm5C_associated_SNPs_16429 0 0 1 0 2 INPPL1 chr11:71946160 3'AG 71946160 Downstream 19bp
chr11 71946178 71946178 1 + G C BLCA 71946183 + 71946163 71946203 41 AAACCAATTCTGGCTGATATCGAGTACCTGCAGGACCAGCA AAACCAATTCTGGCTCATATCGAGTACCTGCAGGACCAGCA < 41bp 1 0.588828513335593 1 0.789676666259766 experiment 0.822342973328815 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946183 chr11:71946178 nonsynonymous SNV 0.999 4 16 hm5C_associated_SNPs_16429 0 0 1 0 2 INPPL1 chr11:71946247 5'GT 71946247 Upstream 70bp
chr11 71946178 71946178 1 + G C BLCA 71946190 + 71946170 71946210 41 TTCTGGCTGATATCGAGTACCTGCAGGACCAGCACCTCCTG TTCTGGCTCATATCGAGTACCTGCAGGACCAGCACCTCCTG < 41bp 1 0.751181324335719 1 0.661549031734467 experiment 0.497637351328561 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946190 chr11:71946178 nonsynonymous SNV 0.999 4 9 hm5C_associated_SNPs_16430 0 0 1 0 2 INPPL1 chr11:71946160 3'AG 71946160 Downstream 19bp
chr11 71946178 71946178 1 + G C BLCA 71946190 + 71946170 71946210 41 TTCTGGCTGATATCGAGTACCTGCAGGACCAGCACCTCCTG TTCTGGCTCATATCGAGTACCTGCAGGACCAGCACCTCCTG < 41bp 1 0.751181324335719 1 0.661549031734467 experiment 0.497637351328561 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946190 chr11:71946178 nonsynonymous SNV 0.999 4 9 hm5C_associated_SNPs_16430 0 0 1 0 2 INPPL1 chr11:71946247 5'GT 71946247 Upstream 70bp
chr6 32944218 32944218 1 + C A BLCA 32944227 + 32944207 32944247 41 TTACTGCAGCTCCTCCAGCCCAGCCCCTTGCCAAGGTATGA TTACTGCAGCTACTCCAGCCCAGCCCCTTGCCAAGGTATGA < 41bp 1 0.27080808845611 1 0.106467097997665 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32944227 chr6:32944218 nonsynonymous SNV 0.933 1 12 hm5C_associated_SNPs_16431 0 0 1 0 1 BRD2 chr6:32944241 5'GT 32944241 Upstream 24bp
chr3 52011891 52011891 1 + T C BLCA 52011901 + 52011881 52011921 41 CTCCAGACTGTGGTACAGACCTCCATGAGCCGGTCCCAGGT CTCCAGACTGCGGTACAGACCTCCATGAGCCGGTCCCAGGT < 41bp 1 0.790911595653073 1 0.989763617515564 experiment 0.418176808693854 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control ABHD14A ENSG00000114786;ENSG00000248487 CDS Human other chr3:52011901 chr3:52011891 nonsynonymous SNV 0.988 1 11 hm5C_associated_SNPs_16432 0 0 1 0 1 ABHD14A chr3:52011887 3'AG 52011887 Downstream 5bp
chr5 61778976 61778976 1 + C G BLCA 61778983 + 61778963 61779003 41 TACTCCTCTAATTCAGAGATCACTGGAATTTTCTGTAAGCT TACTCCTCTAATTGAGAGATCACTGGAATTTTCTGTAAGCT < 41bp 1 0.136916421511324 1 0.179348737001419 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IPO11 ENSG00000086200 CDS Human protein_coding chr5:61778983 chr5:61778976 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_16435 0 0 1 0 1 IPO11 chr5:61778928 3'AG 61778928 Downstream 49bp
chr19 6177330 6177330 1 + G T BLCA 6177336 + 6177316 6177356 41 CACTCAGCCATATTGCAGCACAGATGATGGACATCTGGGTA CACTCAGCCATATTTCAGCACAGATGATGGACATCTGGGTA < 41bp 1 0.401558342482828 1 0.0635327398777008 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ACSBG2 ENSG00000130377 CDS Human protein_coding chr19:6177336 chr19:6177330 nonsynonymous SNV 0.582 0 15 hm5C_associated_SNPs_16436 0 0 0 0 2 ACSBG2 chr19:6177240 3'AG 6177240 Downstream 91bp
chr19 6177330 6177330 1 + G T BLCA 6177336 + 6177316 6177356 41 CACTCAGCCATATTGCAGCACAGATGATGGACATCTGGGTA CACTCAGCCATATTTCAGCACAGATGATGGACATCTGGGTA < 41bp 1 0.401558342482828 1 0.0635327398777008 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ACSBG2 ENSG00000130377 CDS Human protein_coding chr19:6177336 chr19:6177330 nonsynonymous SNV 0.582 0 15 hm5C_associated_SNPs_16436 0 0 0 0 2 ACSBG2 chr19:6177407 5'GT 6177407 Upstream 78bp
chr11 46387826 46387826 1 + G A BLCA 46387834 + 46387814 46387854 41 CTTTCTTTAGGAGACATTTCCGGGGGAAGGTGCCAGGCCCT CTTTCTTTAGGAAACATTTCCGGGGGAAGGTGCCAGGCCCT < 41bp 1 0.771724258511829 1 0.986172378063202 experiment 0.456551482976342 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46387834 chr11:46387826 nonsynonymous SNV 0.800 0 13 hm5C_associated_SNPs_16438 0 0 1 0 1 DGKZ chr11:46387794 3'AG 46387794 Downstream 33bp
chr5 149006694 149006694 1 + C G BLCA 149006692 + 149006672 149006712 41 GCTCTCCTGAGCAGGTATGGCCCTGGGAAGCTGTACCAGGT GCTCTCCTGAGCAGGTATGGCCGTGGGAAGCTGTACCAGGT < 41bp 1 0.262032114099414 1 0.565405964851379 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:149006692 chr5:149006694 nonsynonymous SNV 0.057 3 23 hm5C_associated_SNPs_16440 0 0 0 0 1 ARHGEF37 chr5:149006639 3'AG 149006639 Downstream 56bp
chr15 89835963 89835963 1 + G C BLCA 89835978 + 89835958 89835998 41 TATAAGAATACAGTCATACCCTTACAGCAGGGAGAGGAGGA TATAACAATACAGTCATACCCTTACAGCAGGGAGAGGAGGA < 41bp 1 0.111742717120262 1 0.079216331243515 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout FANCI ENSG00000140525 CDS Human protein_coding chr15:89835978 chr15:89835963 nonsynonymous SNV 0.985 3 6 hm5C_associated_SNPs_16441 0 0 1 0 1 FANCI chr15:89835919 3'AG 89835919 Downstream 45bp
chr1 227923158 227923158 1 + G A BLCA 227923153 + 227923133 227923173 41 TTCACTGCGCAGGCGCCGAGCGGCCGAGGCGCCGCGGTCGG TTCACTGCGCAGGCGCCGAGCGGCCAAGGCGCCGCGGTCGG < 41bp 1 0.61678542095653 1 0.733982145786285 experiment 0.76642915808694 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNAP47 ENSG00000143740 CDS Human protein_coding chr1:227923153 chr1:227923158 synonymous SNV . 0 26 hm5C_associated_SNPs_16442 0 0 1 0 1 SNAP47 chr1:227923200 5'GT 227923200 Upstream 43bp
chr14 73576063 73576063 1 + C T BLCA 73576058 + 73576038 73576078 41 TCACTTTTACAGAGGAAGTGCTCTTCAGAAAAGGTTGCGTG TCACTTTTACAGAGGAAGTGCTCTTTAGAAAAGGTTGCGTG < 41bp 1 0.1452712273047 1 0.140395641326904 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73576058 chr14:73576063 stopgain 0.999 1 26 hm5C_associated_SNPs_16443 0 0 1 0 1 RBM25 chr14:73576050 3'AG 73576050 Downstream 14bp
chr14 73576063 73576063 1 + C T BLCA 73576060 + 73576040 73576080 41 ACTTTTACAGAGGAAGTGCTCTTCAGAAAAGGTTGCGTGAT ACTTTTACAGAGGAAGTGCTCTTTAGAAAAGGTTGCGTGAT < 41bp 1 0.374607969083021 1 0.158947646617889 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73576060 chr14:73576063 stopgain 0.999 1 24 hm5C_associated_SNPs_16444 0 0 1 0 1 RBM25 chr14:73576050 3'AG 73576050 Downstream 14bp
chr14 73576063 73576063 1 + C T BLCA 73576075 + 73576055 73576095 41 GTGCTCTTCAGAAAAGGTTGCGTGATAGAGAAAAGGAAATG GTGCTCTTTAGAAAAGGTTGCGTGATAGAGAAAAGGAAATG < 41bp 1 0.451507610844797 1 0.298324644565582 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73576075 chr14:73576063 stopgain 0.999 1 9 hm5C_associated_SNPs_16445 0 0 1 0 1 RBM25 chr14:73576050 3'AG 73576050 Downstream 14bp
chr20 34776319 34776319 1 + C T BLCA 34776322 + 34776302 34776342 41 TGTGCCAATGGCCTGCTCATCTACCGGGACCGGCTGAGAAT TGTGCCAATGGCCTGCTTATCTACCGGGACCGGCTGAGAAT < 41bp 1 0.467658614557791 1 0.30712503194809 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPB41L1 ENSG00000088367 CDS Human protein_coding chr20:34776322 chr20:34776319 synonymous SNV . 0 18 hm5C_associated_SNPs_16446 0 0 1 0 1 EPB41L1 chr20:34776269 3'AG 34776269 Downstream 51bp
chr7 106797459 106797459 1 + G C BLCA 106797463 + 106797443 106797483 41 TTCTTTTTTCATTGTAGAATCTGGAGAAGTGAAAATTACTA TTCTTTTTTCATTGTACAATCTGGAGAAGTGAAAATTACTA < 41bp 1 0.798726094239708 1 0.694596707820892 experiment 0.402547811520584 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106797463 chr7:106797459 nonsynonymous SNV 1.000 5 17 hm5C_associated_SNPs_16447 0 0 1 0 2 PRKAR2B chr7:106797429 3'AG 106797429 Downstream 31bp
chr7 106797459 106797459 1 + G C BLCA 106797463 + 106797443 106797483 41 TTCTTTTTTCATTGTAGAATCTGGAGAAGTGAAAATTACTA TTCTTTTTTCATTGTACAATCTGGAGAAGTGAAAATTACTA < 41bp 1 0.798726094239708 1 0.694596707820892 experiment 0.402547811520584 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106797463 chr7:106797459 nonsynonymous SNV 1.000 5 17 hm5C_associated_SNPs_16447 0 0 1 0 2 PRKAR2B chr7:106797494 5'GT 106797494 Upstream 36bp
chr3 49049462 49049462 1 + G A BLCA 49049444 + 49049424 49049464 41 CCCTGCACAGACAGGTGCACCCTCTCTTCAGCCTGCCTGAT CCCTGCACAGACAGGTGCACCCTCTCTTCAGCCTGCCTAAT < 41bp 1 0.0465160552582643 1 0.0380955040454865 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR6 ENSG00000178252 CDS Human protein_coding chr3:49049444 chr3:49049462 synonymous SNV . 0 39 hm5C_associated_SNPs_16449 0 0 1 0 1 WDR6 chr3:49049455 3'AG 49049455 Downstream 8bp
chr16 731803 731803 1 + G C BLCA 731817 + 731797 731837 41 CTGGAAGAGTGCCAGCGAAACCACGAGGGTGATGAGGACGA CTGGAACAGTGCCAGCGAAACCACGAGGGTGATGAGGACGA < 41bp 1 0.357973725592637 1 0.150616079568863 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STUB1 ENSG00000103266 CDS Human protein_coding chr16:731817 chr16:731803 nonsynonymous SNV 0.927 1 7 hm5C_associated_SNPs_16455 0 0 1 0 2 STUB1 chr16:731793 3'AG 731793 Downstream 11bp
chr16 731803 731803 1 + G C BLCA 731817 + 731797 731837 41 CTGGAAGAGTGCCAGCGAAACCACGAGGGTGATGAGGACGA CTGGAACAGTGCCAGCGAAACCACGAGGGTGATGAGGACGA < 41bp 1 0.357973725592637 1 0.150616079568863 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STUB1 ENSG00000103266 CDS Human protein_coding chr16:731817 chr16:731803 nonsynonymous SNV 0.927 1 7 hm5C_associated_SNPs_16455 0 0 1 0 2 STUB1 chr16:731880 5'GT 731880 Upstream 78bp
chr3 111667878 111667878 1 + G A BLCA 111667867 + 111667847 111667887 41 GTTTCCTGCTGATGCTGATGCTGTTGCCACTGAGCCTGCCA GTTTCCTGCTGATGCTGATGCTGTTGCCACTAAGCCTGCCA < 41bp 1 0.263185142093561 1 0.116549760103226 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111667867 chr3:111667878 nonsynonymous SNV 0.990 0 32 hm5C_associated_SNPs_16456 0 0 1 0 2 PHLDB2 chr3:111667779 3'AG 111667779 Downstream 100bp
chr3 111667878 111667878 1 + G A BLCA 111667867 + 111667847 111667887 41 GTTTCCTGCTGATGCTGATGCTGTTGCCACTGAGCCTGCCA GTTTCCTGCTGATGCTGATGCTGTTGCCACTAAGCCTGCCA < 41bp 1 0.263185142093561 1 0.116549760103226 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111667867 chr3:111667878 nonsynonymous SNV 0.990 0 32 hm5C_associated_SNPs_16456 0 0 1 0 2 PHLDB2 chr3:111667922 5'GT 111667922 Upstream 45bp
chr7 55259449 55259449 1 + G A BLCA 55259432 + 55259412 55259452 41 GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGA GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCACGA < 41bp 1 0.0773911785719062 1 0.353093475103378 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55259432 chr7:55259449 nonsynonymous SNV 0.963 4 38 hm5C_associated_SNPs_16458 0 0 1 0 1 EGFR chr7:55259412 3'AG 55259412 Downstream 38bp
chr11 130011399 130011399 1 + G T BLCA 130011408 + 130011388 130011428 41 TTCAGGTCATTGACGAGACTCTGGATGTTAAGGAAATGATT TTCAGGTCATTTACGAGACTCTGGATGTTAAGGAAATGATT < 41bp 1 0.725230417735508 1 0.631905436515808 experiment 0.549539164528984 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130011408 chr11:130011399 nonsynonymous SNV 0.948 5 12 hm5C_associated_SNPs_16459 0 0 1 0 2 APLP2 chr11:130011393 3'AG 130011393 Downstream 7bp
chr11 130011399 130011399 1 + G T BLCA 130011408 + 130011388 130011428 41 TTCAGGTCATTGACGAGACTCTGGATGTTAAGGAAATGATT TTCAGGTCATTTACGAGACTCTGGATGTTAAGGAAATGATT < 41bp 1 0.725230417735508 1 0.631905436515808 experiment 0.549539164528984 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130011408 chr11:130011399 nonsynonymous SNV 0.948 5 12 hm5C_associated_SNPs_16459 0 0 1 0 2 APLP2 chr11:130011467 5'GT 130011467 Upstream 69bp
chr3 41278172 41278172 1 + T A BLCA 41278166 + 41278146 41278186 41 TTCAGTTGAGCTGACCAGCTCTCTCTTCAGAACAGAGCCAA TTCAGTTGAGCTGACCAGCTCTCTCTACAGAACAGAGCCAA < 41bp 1 0.337658771655328 1 0.475373774766922 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41278166 chr3:41278172 nonsynonymous SNV 0.999 1 27 hm5C_associated_SNPs_16460 0 0 1 0 2 CTNNB1 chr3:41278079 3'AG 41278079 Downstream 94bp
chr3 41278172 41278172 1 + T A BLCA 41278166 + 41278146 41278186 41 TTCAGTTGAGCTGACCAGCTCTCTCTTCAGAACAGAGCCAA TTCAGTTGAGCTGACCAGCTCTCTCTACAGAACAGAGCCAA < 41bp 1 0.337658771655328 1 0.475373774766922 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41278166 chr3:41278172 nonsynonymous SNV 0.999 1 27 hm5C_associated_SNPs_16460 0 0 1 0 2 CTNNB1 chr3:41278200 5'GT 41278200 Upstream 29bp
chr16 816647 816647 1 + C G BLCA 816657 + 816637 816677 41 CCACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCC CCACAAGGCTGCTCGGCGGCCCCTCCCACAGGTGGCCACCC < 41bp 1 0.0189268139243132 1 0.0798549950122833 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816657 chr16:816647 nonsynonymous SNV 0.006 0 11 hm5C_associated_SNPs_16462 0 0 0 0 1 MSLN chr16:816644 3'AG 816644 Downstream 4bp
chr16 816647 816647 1 + C G BLCA 816658 + 816638 816678 41 CACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCCT CACAAGGCTGCTCGGCGGCCCCTCCCACAGGTGGCCACCCT < 41bp 1 0.0121930198292398 1 0.0617772936820984 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816658 chr16:816647 nonsynonymous SNV 0.006 0 10 hm5C_associated_SNPs_16463 0 0 0 0 1 MSLN chr16:816644 3'AG 816644 Downstream 4bp
chr9 137328331 137328331 1 + C G BLCA 137328316 + 137328296 137328336 41 AGACCTGTTCCCTGCAGGTTCGCTAAGCTCTTGCTCCGCCT AGACCTGTTCCCTGCAGGTTCGCTAAGCTCTTGCTGCGCCT < 41bp 1 0.368240682641574 1 0.3035868704319 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RXRA ENSG00000186350 CDS Human protein_coding chr9:137328316 chr9:137328331 synonymous SNV . 0 36 hm5C_associated_SNPs_16464 0 0 1 0 1 RXRA chr9:137328313 3'AG 137328313 Downstream 19bp
chr19 13002715 13002715 1 + C T BLCA 13002695 + 13002675 13002715 41 CGCTGGTGCTGGAGGAGCAGCTGACCACAGATGAGATCCTC CGCTGGTGCTGGAGGAGCAGCTGACCACAGATGAGATCCTT < 41bp 1 0.42896833182414 1 0.771531581878662 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13002695 chr19:13002715 nonsynonymous SNV . 0 41 hm5C_associated_SNPs_16466 0 0 0 0 2 GCDH chr19:13002645 3'AG 13002645 Downstream 71bp
chr19 13002715 13002715 1 + C T BLCA 13002695 + 13002675 13002715 41 CGCTGGTGCTGGAGGAGCAGCTGACCACAGATGAGATCCTC CGCTGGTGCTGGAGGAGCAGCTGACCACAGATGAGATCCTT < 41bp 1 0.42896833182414 1 0.771531581878662 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13002695 chr19:13002715 nonsynonymous SNV . 0 41 hm5C_associated_SNPs_16466 0 0 0 0 2 GCDH chr19:13002788 5'GT 13002788 Upstream 74bp
chr19 55898022 55898022 1 + G A BLCA 55898006 + 55897986 55898026 41 ATTCACCGCAAGACTGTGGGCGTGGAGCCGGCAGCCGACGG ATTCACCGCAAGACTGTGGGCGTGGAGCCGGCAGCCAACGG < 41bp 1 0.643621943989631 1 0.50504469871521 experiment 0.712756112020738 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55898006 chr19:55898022 nonsynonymous SNV 0.925 2 37 hm5C_associated_SNPs_16467 0 0 1 0 2 RPL28 chr19:55897938 3'AG 55897938 Downstream 85bp
chr19 55898022 55898022 1 + G A BLCA 55898006 + 55897986 55898026 41 ATTCACCGCAAGACTGTGGGCGTGGAGCCGGCAGCCGACGG ATTCACCGCAAGACTGTGGGCGTGGAGCCGGCAGCCAACGG < 41bp 1 0.643621943989631 1 0.50504469871521 experiment 0.712756112020738 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55898006 chr19:55898022 nonsynonymous SNV 0.925 2 37 hm5C_associated_SNPs_16467 0 0 1 0 2 RPL28 chr19:55898061 5'GT 55898061 Upstream 40bp
chr19 55898022 55898022 1 + G A BLCA 55898017 + 55897997 55898037 41 GACTGTGGGCGTGGAGCCGGCAGCCGACGGCAAAGGTGTCG GACTGTGGGCGTGGAGCCGGCAGCCAACGGCAAAGGTGTCG < 41bp 1 0.422193458434909 1 0.293293356895447 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55898017 chr19:55898022 nonsynonymous SNV 0.925 2 26 hm5C_associated_SNPs_16468 0 0 1 0 2 RPL28 chr19:55897938 3'AG 55897938 Downstream 85bp
chr19 55898022 55898022 1 + G A BLCA 55898017 + 55897997 55898037 41 GACTGTGGGCGTGGAGCCGGCAGCCGACGGCAAAGGTGTCG GACTGTGGGCGTGGAGCCGGCAGCCAACGGCAAAGGTGTCG < 41bp 1 0.422193458434909 1 0.293293356895447 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55898017 chr19:55898022 nonsynonymous SNV 0.925 2 26 hm5C_associated_SNPs_16468 0 0 1 0 2 RPL28 chr19:55898061 5'GT 55898061 Upstream 40bp
chr1 183096378 183096378 1 + G A BLCA 183096385 + 183096365 183096405 41 TGACTGTCATCCTGAGGGATCTCTTTCACTTCAGTGCAAAG TGACTGTCATCCTAAGGGATCTCTTTCACTTCAGTGCAAAG < 41bp 1 0.0351619045755962 1 0.046731024980545 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183096385 chr1:183096378 nonsynonymous SNV 0.990 2 14 hm5C_associated_SNPs_16469 0 0 1 0 1 LAMC1 chr1:183096361 3'AG 183096361 Downstream 18bp
chr1 183096378 183096378 1 + G A BLCA 183096391 + 183096371 183096411 41 TCATCCTGAGGGATCTCTTTCACTTCAGTGCAAAGATGATG TCATCCTAAGGGATCTCTTTCACTTCAGTGCAAAGATGATG < 41bp 1 0.0731117985241779 1 0.111715108156204 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183096391 chr1:183096378 nonsynonymous SNV 0.990 2 8 hm5C_associated_SNPs_16470 0 0 1 0 1 LAMC1 chr1:183096361 3'AG 183096361 Downstream 18bp
chr20 39797452 39797452 1 + G A BLCA 39797451 + 39797431 39797471 41 TACAAGGCCCAGAGGGAGGACGAGCTGACCTTCATCAAGAG TACAAGGCCCAGAGGGAGGACAAGCTGACCTTCATCAAGAG < 41bp 1 0.234175798378969 1 0.461054086685181 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39797451 chr20:39797452 nonsynonymous SNV 0.868 4 22 hm5C_associated_SNPs_16471 0 0 1 0 1 PLCG1 chr20:39797510 5'GT 39797510 Upstream 59bp
chr8 37554677 37554677 1 + G A BLCA 37554680 + 37554660 37554700 41 CAGCTGGACGCCAAGAAGAGCCCCTTGGCGCTGCTGGCTCA CAGCTGGACGCCAAGAAAAGCCCCTTGGCGCTGCTGGCTCA < 41bp 1 0.219685221406368 1 0.118014276027679 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF703 ENSG00000183779 CDS Human protein_coding chr8:37554680 chr8:37554677 synonymous SNV . 0 18 hm5C_associated_SNPs_16472 0 0 1 0 1 ZNF703 chr8:37554663 3'AG 37554663 Downstream 15bp
chr19 11472107 11472107 1 + C T BLCA 11472113 + 11472093 11472133 41 GTGGCCGCCGCGCGCCGCGCCTTCCCCTGCAAGGATGCGGC GTGGCCGCCGCGCGTCGCGCCTTCCCCTGCAAGGATGCGGC < 41bp 1 0.131683978541219 1 0.326326817274094 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11472113 chr19:11472107 synonymous SNV . 0 15 hm5C_associated_SNPs_16473 0 0 0 0 1 PLPPR2 chr19:11472164 5'GT 11472164 Upstream 58bp
chr8 145535411 145535411 1 + C G BLCA 145535406 + 145535386 145535426 41 GCCCCCTCCCCAGCCTACAGCAGCTCCAGCCTCTACGCCCC GCCCCCTCCCCAGCCTACAGCAGCTGCAGCCTCTACGCCCC < 41bp 1 0.474986614734199 1 0.368005990982056 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSF1 ENSG00000185122 CDS Human protein_coding chr8:145535406 chr8:145535411 nonsynonymous SNV 0.993 2 26 hm5C_associated_SNPs_16474 0 0 1 0 1 HSF1 chr8:145535386 3'AG 145535386 Downstream 26bp
chr5 50058990 50058990 1 + T C BLCA 50059003 + 50058983 50059023 41 TGAACTATGATGGGGAACTGCACAAGCACCCACAACTGGAA TGAACTACGATGGGGAACTGCACAAGCACCCACAACTGGAA < 41bp 1 0.65791754297852 1 0.393859803676605 experiment 0.68416491404296 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PARP8 ENSG00000151883 CDS Human protein_coding chr5:50059003 chr5:50058990 synonymous SNV . 0 8 hm5C_associated_SNPs_16479 0 0 0 0 2 PARP8 chr5:50058982 3'AG 50058982 Downstream 9bp
chr5 50058990 50058990 1 + T C BLCA 50059003 + 50058983 50059023 41 TGAACTATGATGGGGAACTGCACAAGCACCCACAACTGGAA TGAACTACGATGGGGAACTGCACAAGCACCCACAACTGGAA < 41bp 1 0.65791754297852 1 0.393859803676605 experiment 0.68416491404296 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PARP8 ENSG00000151883 CDS Human protein_coding chr5:50059003 chr5:50058990 synonymous SNV . 0 8 hm5C_associated_SNPs_16479 0 0 0 0 2 PARP8 chr5:50059076 5'GT 50059076 Upstream 87bp
chr14 59014515 59014515 1 + A T BLCA 59014534 + 59014514 59014554 41 CACTCTCCGCTTCACAGATGCCCCCTGCCAAGATGTCAGTG CTCTCTCCGCTTCACAGATGCCCCCTGCCAAGATGTCAGTG < 41bp 1 0.13203350133127 1 0.031034916639328 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA0586 ENSG00000100578 CDS Human protein_coding chr14:59014534 chr14:59014515 nonsynonymous SNV 0.002 1 2 hm5C_associated_SNPs_16480 0 0 0 0 1 KIAA0586 chr14:59014499 3'AG 59014499 Downstream 17bp
chr16 28842303 28842303 1 + A G BLCA 28842286 + 28842266 28842306 41 AAAAAAAAACCAAACAGGCCCTTCCCGCATGTCCCCAAAGG AAAAAAAAACCAAACAGGCCCTTCCCGCATGTCCCCAGAGG < 41bp 1 0.0276171490316376 1 0.132897883653641 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28842286 chr16:28842303 nonsynonymous SNV 0.999 4 38 hm5C_associated_SNPs_16481 0 0 1 0 2 ATXN2L chr16:28842283 3'AG 28842283 Downstream 21bp
chr16 28842303 28842303 1 + A G BLCA 28842286 + 28842266 28842306 41 AAAAAAAAACCAAACAGGCCCTTCCCGCATGTCCCCAAAGG AAAAAAAAACCAAACAGGCCCTTCCCGCATGTCCCCAGAGG < 41bp 1 0.0276171490316376 1 0.132897883653641 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28842286 chr16:28842303 nonsynonymous SNV 0.999 4 38 hm5C_associated_SNPs_16481 0 0 1 0 2 ATXN2L chr16:28842393 5'GT 28842393 Upstream 91bp
chr20 31021631 31021631 1 + G A BLCA 31021621 + 31021601 31021641 41 TCCTTTCCCGAAAAGAAGCCCCGGCTTGAAGATCGTCAGTC TCCTTTCCCGAAAAGAAGCCCCGGCTTGAAAATCGTCAGTC < 41bp 1 0.170137440490904 1 0.190824210643768 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021621 chr20:31021631 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_16488 0 0 1 0 1 ASXL1 chr20:31021720 5'GT 31021720 Upstream 90bp
chr12 51034594 51034594 1 + G A BLCA 51034590 + 51034570 51034610 41 CTTCTGCTCCCTCTAAGTACCACCGAACTCGATCTGGGGGA CTTCTGCTCCCTCTAAGTACCACCAAACTCGATCTGGGGGA < 41bp 1 0.774088460665415 1 0.665178179740906 experiment 0.45182307866917 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51034590 chr12:51034594 nonsynonymous SNV 0.994 2 25 hm5C_associated_SNPs_16489 0 0 1 0 1 DIP2B chr12:51034635 5'GT 51034635 Upstream 42bp
chr7 94917928 94917928 1 + T C BLCA 94917917 + 94917897 94917937 41 CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCCCACTGGTTA < 41bp 1 0.543800930280472 1 0.128427982330322 experiment 0.912398139439055 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917917 chr7:94917928 synonymous SNV . 0 32 hm5C_associated_SNPs_16490 0 0 0 0 1 PPP1R9A chr7:94917848 3'AG 94917848 Downstream 81bp
chr16 24826603 24826603 1 + C G BLCA 24826598 + 24826578 24826618 41 CCACGTGCCAAATCGCCTAACGGCTCTAGCAGTGTTAATTG CCACGTGCCAAATCGCCTAACGGCTGTAGCAGTGTTAATTG < 41bp 1 0.539973458720879 1 0.111861914396286 experiment 0.920053082558241 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24826598 chr16:24826603 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_16491 0 0 1 0 1 TNRC6A chr16:24826626 5'GT 24826626 Upstream 24bp
chr15 63128203 63128203 1 + C G BLCA 63128184 + 63128164 63128204 41 GGAGAAGCTCATCTCATCTGCCAAGCAGGTCGCCGCTTCCA GGAGAAGCTCATCTCATCTGCCAAGCAGGTCGCCGCTTCGA < 41bp 1 0.0624893350253429 1 0.361660301685333 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63128184 chr15:63128203 synonymous SNV . 0 40 hm5C_associated_SNPs_16492 0 0 0 0 1 TLN2 chr15:63128272 5'GT 63128272 Upstream 70bp
chr12 57560824 57560824 1 + C T BLCA 57560805 + 57560785 57560825 41 TGGATGACGACTGTGGGGACCGCTCTGATGAGTCTGCTTCG TGGATGACGACTGTGGGGACCGCTCTGATGAGTCTGCTTTG < 41bp 1 0.0576985051078638 1 0.197162836790085 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57560805 chr12:57560824 nonsynonymous SNV 0.360 4 40 hm5C_associated_SNPs_16493 0 0 1 0 1 LRP1 chr12:57560829 5'GT 57560829 Upstream 6bp
chr3 33906752 33906752 1 + C T BLCA 33906745 + 33906725 33906765 41 TTTCTTATAGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTC TTTCTTATAGCCTACTAAGCCCCAGCCTCCAGCCAGGCCTC < 41bp 1 0.363862136489389 1 0.0805998146533966 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906745 chr3:33906752 synonymous SNV . 0 28 hm5C_associated_SNPs_16494 0 0 1 0 1 PDCD6IP chr3:33906735 3'AG 33906735 Downstream 18bp
chr3 33906752 33906752 1 + C T BLCA 33906746 + 33906726 33906766 41 TTCTTATAGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCC TTCTTATAGCCTACTAAGCCCCAGCCTCCAGCCAGGCCTCC < 41bp 1 0.128889274876816 1 0.0745579600334167 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906746 chr3:33906752 synonymous SNV . 0 27 hm5C_associated_SNPs_16495 0 0 1 0 1 PDCD6IP chr3:33906735 3'AG 33906735 Downstream 18bp
chr3 33906752 33906752 1 + C T BLCA 33906747 + 33906727 33906767 41 TCTTATAGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCCA TCTTATAGCCTACTAAGCCCCAGCCTCCAGCCAGGCCTCCA < 41bp 1 0.426587350160494 1 0.0962844491004944 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906747 chr3:33906752 synonymous SNV . 0 26 hm5C_associated_SNPs_16496 0 0 1 0 1 PDCD6IP chr3:33906735 3'AG 33906735 Downstream 18bp
chr3 33906752 33906752 1 + C T BLCA 33906750 + 33906730 33906770 41 TATAGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCA TATAGCCTACTAAGCCCCAGCCTCCAGCCAGGCCTCCACCA < 41bp 1 0.047846003722099 1 0.543583333492279 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906750 chr3:33906752 synonymous SNV . 0 23 hm5C_associated_SNPs_16497 0 0 1 0 1 PDCD6IP chr3:33906735 3'AG 33906735 Downstream 18bp
chr3 33906752 33906752 1 + C T BLCA 33906753 + 33906733 33906773 41 AGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCACCT AGCCTACTAAGCCCCAGCCTCCAGCCAGGCCTCCACCACCT < 41bp 1 0.237106472183631 1 0.312452852725983 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906753 chr3:33906752 synonymous SNV . 0 20 hm5C_associated_SNPs_16498 0 0 1 0 1 PDCD6IP chr3:33906735 3'AG 33906735 Downstream 18bp
chr3 33906752 33906752 1 + C T BLCA 33906754 + 33906734 33906774 41 GCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCACCTG GCCTACTAAGCCCCAGCCTCCAGCCAGGCCTCCACCACCTG < 41bp 1 0.40126800281876 1 0.211411476135254 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906754 chr3:33906752 synonymous SNV . 0 19 hm5C_associated_SNPs_16499 0 0 1 0 1 PDCD6IP chr3:33906735 3'AG 33906735 Downstream 18bp
chr1 39908201 39908201 1 + G T BLCA 39908204 + 39908184 39908224 41 AGAGACCAATAAGTGGAGACCCAAAAGTCATTGAAGTTGAG AGAGACCAATAAGTGGATACCCAAAAGTCATTGAAGTTGAG < 41bp 1 0.0734066899369625 1 0.252525329589844 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39908204 chr1:39908201 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_16500 0 0 1 0 1 MACF1 chr1:39908239 5'GT 39908239 Upstream 39bp
chr19 18255941 18255941 1 + G T BLCA 18255949 + 18255929 18255969 41 CGGCCCCCCATCGTTATCCACAGCTCTGGCAAGAAGTACGG CGGCCCCCCATCTTTATCCACAGCTCTGGCAAGAAGTACGG < 41bp 1 0.219166969054901 1 0.064570277929306 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18255949 chr19:18255941 nonsynonymous SNV 0.997 3 13 hm5C_associated_SNPs_16501 0 0 0 0 1 MAST3 chr19:18256039 5'GT 18256039 Upstream 99bp
chr1 116932235 116932235 1 + C G BLCA 116932239 + 116932219 116932259 41 TCTTTCTTCATCCTTTCTCTCATCCTTGAGTACACCTGGCT TCTTTCTTCATCCTTTGTCTCATCCTTGAGTACACCTGGCT < 41bp 1 0.120700191486313 1 0.194050043821335 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116932239 chr1:116932235 nonsynonymous SNV 0.982 5 17 hm5C_associated_SNPs_16503 0 0 1 0 1 ATP1A1 chr1:116932329 5'GT 116932329 Upstream 95bp
chr19 12779345 12779345 1 + C T BLCA 12779329 + 12779309 12779349 41 ACTTGTTCTGTAGGGCAAGTCTCACATGAAGCTACTCATCA ACTTGTTCTGTAGGGCAAGTCTCACATGAAGCTACTTATCA < 41bp 1 0.256899415094869 1 0.0433531105518341 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WDR83OS ENSG00000105583 CDS Human other chr19:12779329 chr19:12779345 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_16504 0 0 1 0 2 WDR83 chr19:12779322 3'AG 12779322 Downstream 24bp
chr19 12779345 12779345 1 + C T BLCA 12779329 + 12779309 12779349 41 ACTTGTTCTGTAGGGCAAGTCTCACATGAAGCTACTCATCA ACTTGTTCTGTAGGGCAAGTCTCACATGAAGCTACTTATCA < 41bp 1 0.256899415094869 1 0.0433531105518341 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WDR83OS ENSG00000105583 CDS Human protein_coding chr19:12779329 chr19:12779345 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_16504 0 0 1 0 2 WDR83 chr19:12779441 5'GT 12779441 Upstream 97bp
chr19 12779348 12779348 1 + C T BLCA 12779329 + 12779309 12779349 41 ACTTGTTCTGTAGGGCAAGTCTCACATGAAGCTACTCATCA ACTTGTTCTGTAGGGCAAGTCTCACATGAAGCTACTCATTA < 41bp 1 0.282600653739689 1 0.0442149937152863 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WDR83OS ENSG00000105583 CDS Human other chr19:12779329 chr19:12779348 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_16505 0 0 1 0 2 WDR83 chr19:12779322 3'AG 12779322 Downstream 27bp
chr19 12779348 12779348 1 + C T BLCA 12779329 + 12779309 12779349 41 ACTTGTTCTGTAGGGCAAGTCTCACATGAAGCTACTCATCA ACTTGTTCTGTAGGGCAAGTCTCACATGAAGCTACTCATTA < 41bp 1 0.282600653739689 1 0.0442149937152863 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WDR83OS ENSG00000105583 CDS Human protein_coding chr19:12779329 chr19:12779348 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_16505 0 0 1 0 2 WDR83 chr19:12779441 5'GT 12779441 Upstream 94bp
chr5 179137026 179137026 1 + G C BLCA 179137028 + 179137008 179137048 41 GCCAGATGCAGATCTGAAGACCTATTTTACTGATAAGAAAA GCCAGATGCAGATCTGAACACCTATTTTACTGATAAGAAAA < 41bp 1 0.0742359230952474 1 0.103849053382874 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179137028 chr5:179137026 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_16506 0 0 1 0 1 CANX chr5:179137066 5'GT 179137066 Upstream 41bp
chr6 170632213 170632213 1 + A G BLCA 170632211 + 170632191 170632231 41 GCAGAAAGCTACCTGGTGTACAACATCATGAGCAGTGGAGA GCAGAAAGCTACCTGGTGTACAGCATCATGAGCAGTGGAGA < 41bp 1 0.677040193664259 1 0.116970360279083 experiment 0.645919612671483 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM120B ENSG00000112584 CDS Human protein_coding chr6:170632211 chr6:170632213 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_16507 0 0 1 0 1 FAM120B chr6:170632167 3'AG 170632167 Downstream 47bp
chr17 7810488 7810488 1 + C G BLCA 7810504 + 7810484 7810524 41 ACCTCTTGAGAAGGAGGAAGCTGAAAACCAGGAGGAAAAGC ACCTGTTGAGAAGGAGGAAGCTGAAAACCAGGAGGAAAAGC < 41bp 1 0.529782436145595 1 0.420634567737579 experiment 0.94043512770881 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810504 chr17:7810488 nonsynonymous SNV 0.967 1 5 hm5C_associated_SNPs_16508 0 0 1 0 2 CHD3 chr17:7810444 3'AG 7810444 Downstream 45bp
chr17 7810488 7810488 1 + C G BLCA 7810504 + 7810484 7810524 41 ACCTCTTGAGAAGGAGGAAGCTGAAAACCAGGAGGAAAAGC ACCTGTTGAGAAGGAGGAAGCTGAAAACCAGGAGGAAAAGC < 41bp 1 0.529782436145595 1 0.420634567737579 experiment 0.94043512770881 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810504 chr17:7810488 nonsynonymous SNV 0.967 1 5 hm5C_associated_SNPs_16508 0 0 1 0 2 CHD3 chr17:7810565 5'GT 7810565 Upstream 78bp
chr11 63996989 63996989 1 + G C BLCA 63997000 + 63996980 63997020 41 GCACTACCTGAGTGGGGGACCCGAGGCCCACGAGTCTACAG GCACTACCTCAGTGGGGGACCCGAGGCCCACGAGTCTACAG < 41bp 1 0.426670672874052 1 0.859846830368042 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997000 chr11:63996989 synonymous SNV . 0 10 hm5C_associated_SNPs_16509 0 0 0 0 2 NUDT22 chr11:63996950 3'AG 63996950 Downstream 40bp
chr11 63996989 63996989 1 + G C BLCA 63997000 + 63996980 63997020 41 GCACTACCTGAGTGGGGGACCCGAGGCCCACGAGTCTACAG GCACTACCTCAGTGGGGGACCCGAGGCCCACGAGTCTACAG < 41bp 1 0.426670672874052 1 0.859846830368042 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997000 chr11:63996989 synonymous SNV . 0 10 hm5C_associated_SNPs_16509 0 0 0 0 2 NUDT22 chr11:63997043 5'GT 63997043 Upstream 55bp
chr9 139734253 139734253 1 + G A BLCA 139734259 + 139734239 139734279 41 GCCTTCAGACTGAAGAATGACTCGGACCTCTTCGGGCTGGG GCCTTCAGACTGAAAAATGACTCGGACCTCTTCGGGCTGGG < 41bp 1 0.692331011339556 1 0.393238335847855 experiment 0.615337977320887 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734259 chr9:139734253 synonymous SNV . 0 15 hm5C_associated_SNPs_16510 0 0 1 0 1 RABL6 chr9:139734317 5'GT 139734317 Upstream 65bp
chr9 139734253 139734253 1 + G A BLCA 139734265 + 139734245 139734285 41 AGACTGAAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGA AGACTGAAAAATGACTCGGACCTCTTCGGGCTGGGGCTGGA < 41bp 1 0.0419058057008594 1 0.0440157353878021 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734265 chr9:139734253 synonymous SNV . 0 9 hm5C_associated_SNPs_16511 0 0 1 0 1 RABL6 chr9:139734317 5'GT 139734317 Upstream 65bp
chr9 139734253 139734253 1 + G A BLCA 139734266 + 139734246 139734286 41 GACTGAAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGAG GACTGAAAAATGACTCGGACCTCTTCGGGCTGGGGCTGGAG < 41bp 1 0.0969007925225546 1 0.126247972249985 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734266 chr9:139734253 synonymous SNV . 0 8 hm5C_associated_SNPs_16512 0 0 1 0 1 RABL6 chr9:139734317 5'GT 139734317 Upstream 65bp
chr9 139734253 139734253 1 + G A BLCA 139734271 + 139734251 139734291 41 AAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGAGGAGGC AAAAATGACTCGGACCTCTTCGGGCTGGGGCTGGAGGAGGC < 41bp 1 0.685101540576394 1 0.91473263502121 experiment 0.629796918847212 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734271 chr9:139734253 synonymous SNV . 0 3 hm5C_associated_SNPs_16513 0 0 1 0 1 RABL6 chr9:139734317 5'GT 139734317 Upstream 65bp
chr11 108151820 108151820 1 + C T BLCA 108151830 + 108151810 108151850 41 GTAGCCCTATCTGCGAAAAACAGGCTTTGTTTGCCCTGTGT GTAGCCCTATTTGCGAAAAACAGGCTTTGTTTGCCCTGTGT < 41bp 1 0.333377324799937 1 0.456506729125977 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108151830 chr11:108151820 synonymous SNV . 0 11 hm5C_associated_SNPs_16514 0 0 1 0 2 ATM chr11:108151722 3'AG 108151722 Downstream 99bp
chr11 108151820 108151820 1 + C T BLCA 108151830 + 108151810 108151850 41 GTAGCCCTATCTGCGAAAAACAGGCTTTGTTTGCCCTGTGT GTAGCCCTATTTGCGAAAAACAGGCTTTGTTTGCCCTGTGT < 41bp 1 0.333377324799937 1 0.456506729125977 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108151830 chr11:108151820 synonymous SNV . 0 11 hm5C_associated_SNPs_16514 0 0 1 0 2 ATM chr11:108151895 5'GT 108151895 Upstream 76bp
chr12 105553817 105553817 1 + C T BLCA 105553821 + 105553801 105553841 41 GATCACACACGAAATTCTGCCGAAGGCACAGAATATTTCAA GATCACACACGAAATTTTGCCGAAGGCACAGAATATTTCAA < 41bp 1 0.478323771949485 1 0.493763327598572 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105553821 chr12:105553817 nonsynonymous SNV 0.997 1 17 hm5C_associated_SNPs_16515 0 0 1 0 1 WASHC4 chr12:105553779 3'AG 105553779 Downstream 39bp
chr1 154988787 154988787 1 + G C BLCA 154988768 + 154988748 154988788 41 TCATGCCCGCACTGCCCAGCCCGCTTCCTGCACAGCTACGA TCATGCCCGCACTGCCCAGCCCGCTTCCTGCACAGCTACCA < 41bp 1 0.204698578179876 1 0.0983605980873108 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZBTB7B ENSG00000160685 CDS Human protein_coding chr1:154988768 chr1:154988787 nonsynonymous SNV 0.982 2 40 hm5C_associated_SNPs_16516 0 0 1 0 1 ZBTB7B chr1:154988696 3'AG 154988696 Downstream 92bp
chr6 42854069 42854069 1 + C T BLCA 42854083 + 42854063 42854103 41 AGATCTCATGGTTCTTGTGCCCTTTCCACCTCTCAGTGGCC AGATCTTATGGTTCTTGTGCCCTTTCCACCTCTCAGTGGCC < 41bp 1 0.0125533471282928 1 0.0326441526412964 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL7L1 ENSG00000146223 CDS Human protein_coding chr6:42854083 chr6:42854069 nonsynonymous SNV 0.273 1 7 hm5C_associated_SNPs_16517 0 0 1 0 1 RPL7L1 chr6:42853994 3'AG 42853994 Downstream 76bp
chr3 20019815 20019815 1 + A C BLCA 20019825 + 20019805 20019845 41 GCACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA GCACAGTCCTCTGCAGATGACAATAGTTTATTATTCATGGA < 41bp 1 0.486593836889217 1 0.0920608043670654 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019825 chr3:20019815 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_16518 0 0 1 2 2 RAB5A chr3:20019802 3'AG 20019802 Downstream 14bp
chr3 20019815 20019815 1 + A C BLCA 20019825 + 20019805 20019845 41 GCACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA GCACAGTCCTCTGCAGATGACAATAGTTTATTATTCATGGA < 41bp 1 0.486593836889217 1 0.0920608043670654 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019825 chr3:20019815 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_16518 0 0 1 2 2 RAB5A chr3:20019895 5'GT 20019895 Upstream 81bp
chr22 32889255 32889255 1 + G A BLCA 32889253 + 32889233 32889273 41 TCCTGTGGAGGTTTTTATATCTGCGTGATTTTCGAGGTGAT TCCTGTGGAGGTTTTTATATCTACGTGATTTTCGAGGTGAT < 41bp 1 0.45685197556668 1 0.432032644748688 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32889253 chr22:32889255 synonymous SNV . 0 23 hm5C_associated_SNPs_16519 0 0 1 0 1 FBXO7 chr22:32889268 5'GT 32889268 Upstream 14bp
chr20 39986944 39986944 1 + C T BLCA 39986960 + 39986940 39986980 41 GTTTCTGCCCCACGGACAGCCCTTCTATGCTGCCTTTGGGA GTTTTTGCCCCACGGACAGCCCTTCTATGCTGCCTTTGGGA < 41bp 1 0.0132515441849418 1 0.113916754722595 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39986960 chr20:39986944 synonymous SNV . 0 5 hm5C_associated_SNPs_16520 0 0 1 0 2 LPIN3 chr20:39986877 3'AG 39986877 Downstream 68bp
chr20 39986944 39986944 1 + C T BLCA 39986960 + 39986940 39986980 41 GTTTCTGCCCCACGGACAGCCCTTCTATGCTGCCTTTGGGA GTTTTTGCCCCACGGACAGCCCTTCTATGCTGCCTTTGGGA < 41bp 1 0.0132515441849418 1 0.113916754722595 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39986960 chr20:39986944 synonymous SNV . 0 5 hm5C_associated_SNPs_16520 0 0 1 0 2 LPIN3 chr20:39986991 5'GT 39986991 Upstream 48bp
chr7 69583197 69583197 1 + G T BLCA 69583186 + 69583166 69583206 41 AGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA AGTGGAGAATCCAAGGGCTTCCACCGGAGCATCTCTCGGGA < 41bp 1 0.126297411466019 1 0.162234753370285 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69583186 chr7:69583197 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_16521 0 0 0 0 2 AUTS2 chr7:69583118 3'AG 69583118 Downstream 80bp
chr7 69583197 69583197 1 + G T BLCA 69583186 + 69583166 69583206 41 AGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA AGTGGAGAATCCAAGGGCTTCCACCGGAGCATCTCTCGGGA < 41bp 1 0.126297411466019 1 0.162234753370285 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69583186 chr7:69583197 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_16521 0 0 0 0 2 AUTS2 chr7:69583219 5'GT 69583219 Upstream 23bp
chr1 112305380 112305380 1 + C T BLCA 112305377 + 112305357 112305397 41 TGGATTGGGAGACATACATGCATCGGATTGGGAGAGCTGGC TGGATTGGGAGACATACATGCATTGGATTGGGAGAGCTGGC < 41bp 1 0.318433680758363 1 0.109291911125183 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX20 ENSG00000064703 CDS Human protein_coding chr1:112305377 chr1:112305380 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_16523 0 0 1 0 2 DDX20 chr1:112305299 3'AG 112305299 Downstream 82bp
chr1 112305380 112305380 1 + C T BLCA 112305377 + 112305357 112305397 41 TGGATTGGGAGACATACATGCATCGGATTGGGAGAGCTGGC TGGATTGGGAGACATACATGCATTGGATTGGGAGAGCTGGC < 41bp 1 0.318433680758363 1 0.109291911125183 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX20 ENSG00000064703 CDS Human protein_coding chr1:112305377 chr1:112305380 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_16523 0 0 1 0 2 DDX20 chr1:112305404 5'GT 112305404 Upstream 25bp
chr1 28099877 28099877 1 + G C BLCA 28099858 + 28099838 28099878 41 ACATGTACCGGAACCCGGGGCCCTCGGGGCCCCAGCTCCGG ACATGTACCGGAACCCGGGGCCCTCGGGGCCCCAGCTCCCG < 41bp 1 0.126859697222975 1 0.104141652584076 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STX12 ENSG00000117758 CDS Human protein_coding chr1:28099858 chr1:28099877 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_16526 0 0 1 0 1 STX12 chr1:28099936 5'GT 28099936 Upstream 60bp
chr1 28099877 28099877 1 + G C BLCA 28099859 + 28099839 28099879 41 CATGTACCGGAACCCGGGGCCCTCGGGGCCCCAGCTCCGGG CATGTACCGGAACCCGGGGCCCTCGGGGCCCCAGCTCCCGG < 41bp 1 0.310394929915421 1 0.378759652376175 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STX12 ENSG00000117758 CDS Human protein_coding chr1:28099859 chr1:28099877 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_16527 0 0 1 0 1 STX12 chr1:28099936 5'GT 28099936 Upstream 60bp
chr1 28099877 28099877 1 + G C BLCA 28099867 + 28099847 28099887 41 GGAACCCGGGGCCCTCGGGGCCCCAGCTCCGGGACTTCAGC GGAACCCGGGGCCCTCGGGGCCCCAGCTCCCGGACTTCAGC < 41bp 1 0.537526086586728 1 0.274555057287216 experiment 0.924947826826544 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STX12 ENSG00000117758 CDS Human protein_coding chr1:28099867 chr1:28099877 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_16528 0 0 1 0 1 STX12 chr1:28099936 5'GT 28099936 Upstream 60bp
chr1 28099877 28099877 1 + G C BLCA 28099868 + 28099848 28099888 41 GAACCCGGGGCCCTCGGGGCCCCAGCTCCGGGACTTCAGCA GAACCCGGGGCCCTCGGGGCCCCAGCTCCCGGACTTCAGCA < 41bp 1 0.412067730372136 1 0.372327089309692 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STX12 ENSG00000117758 CDS Human protein_coding chr1:28099868 chr1:28099877 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_16529 0 0 1 0 1 STX12 chr1:28099936 5'GT 28099936 Upstream 60bp
chr1 28099877 28099877 1 + G C BLCA 28099869 + 28099849 28099889 41 AACCCGGGGCCCTCGGGGCCCCAGCTCCGGGACTTCAGCAG AACCCGGGGCCCTCGGGGCCCCAGCTCCCGGACTTCAGCAG < 41bp 1 0.440502829730755 1 0.369233369827271 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STX12 ENSG00000117758 CDS Human protein_coding chr1:28099869 chr1:28099877 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_16530 0 0 1 0 1 STX12 chr1:28099936 5'GT 28099936 Upstream 60bp
chr1 28099877 28099877 1 + G C BLCA 28099870 + 28099850 28099890 41 ACCCGGGGCCCTCGGGGCCCCAGCTCCGGGACTTCAGCAGC ACCCGGGGCCCTCGGGGCCCCAGCTCCCGGACTTCAGCAGC < 41bp 1 0.699923310103864 1 0.384572744369507 experiment 0.600153379792271 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STX12 ENSG00000117758 CDS Human protein_coding chr1:28099870 chr1:28099877 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_16531 0 0 1 0 1 STX12 chr1:28099936 5'GT 28099936 Upstream 60bp
chr21 30701862 30701862 1 + C G BLCA 30701844 + 30701824 30701864 41 ATGCACAACGGATAATTTCACTGTCTCGAAATGATTTTCAG ATGCACAACGGATAATTTCACTGTCTCGAAATGATTTTGAG < 41bp 1 0.15433166565686 1 0.200887799263 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BACH1 ENSG00000156273 CDS Human protein_coding chr21:30701844 chr21:30701862 nonsynonymous SNV 0.999 3 39 hm5C_associated_SNPs_16533 0 0 1 0 1 BACH1 chr21:30701808 3'AG 30701808 Downstream 55bp
chr7 98588176 98588176 1 + G T BLCA 98588173 + 98588153 98588193 41 CCACCCATCCAGTGGCTGGCCTGGATCCCACAGCTGCTCAC CCACCCATCCAGTGGCTGGCCTGTATCCCACAGCTGCTCAC < 41bp 1 0.377013632342089 1 0.231290489435196 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98588173 chr7:98588176 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_16534 0 0 1 0 2 TRRAP chr7:98588078 3'AG 98588078 Downstream 99bp
chr7 98588176 98588176 1 + G T BLCA 98588173 + 98588153 98588193 41 CCACCCATCCAGTGGCTGGCCTGGATCCCACAGCTGCTCAC CCACCCATCCAGTGGCTGGCCTGTATCCCACAGCTGCTCAC < 41bp 1 0.377013632342089 1 0.231290489435196 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98588173 chr7:98588176 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_16534 0 0 1 0 2 TRRAP chr7:98588242 5'GT 98588242 Upstream 67bp
chr18 56402448 56402448 1 + A T BLCA 56402451 + 56402431 56402471 41 AAGGTGTCAAGGAGCAGAAGCTTTTGAAATCCAGCATTCTG AAGGTGTCAAGGAGCAGTAGCTTTTGAAATCCAGCATTCTG < 41bp 1 0.0378836394479163 1 0.0233138799667358 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MALT1 ENSG00000172175 CDS Human protein_coding chr18:56402451 chr18:56402448 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_16535 0 0 1 0 1 MALT1 chr18:56402434 3'AG 56402434 Downstream 15bp
chr19 50302947 50302947 1 + G A BLCA 50302928 + 50302908 50302948 41 GGCAGCGGGCGGCTGACCTCCTCTACGCCATGTGTGACCGG GGCAGCGGGCGGCTGACCTCCTCTACGCCATGTGTGACCAG < 41bp 1 0.667187669708576 1 0.790114998817444 experiment 0.665624660582848 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50302928 chr19:50302947 nonsynonymous SNV 0.980 1 40 hm5C_associated_SNPs_16537 0 0 1 0 2 AP2A1 chr19:50302886 3'AG 50302886 Downstream 62bp
chr19 50302947 50302947 1 + G A BLCA 50302928 + 50302908 50302948 41 GGCAGCGGGCGGCTGACCTCCTCTACGCCATGTGTGACCGG GGCAGCGGGCGGCTGACCTCCTCTACGCCATGTGTGACCAG < 41bp 1 0.667187669708576 1 0.790114998817444 experiment 0.665624660582848 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50302928 chr19:50302947 nonsynonymous SNV 0.980 1 40 hm5C_associated_SNPs_16537 0 0 1 0 2 AP2A1 chr19:50303023 5'GT 50303023 Upstream 77bp
chr8 145535421 145535421 1 + C T BLCA 145535406 + 145535386 145535426 41 GCCCCCTCCCCAGCCTACAGCAGCTCCAGCCTCTACGCCCC GCCCCCTCCCCAGCCTACAGCAGCTCCAGCCTCTATGCCCC < 41bp 1 0.319677050871426 1 0.336969494819641 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSF1 ENSG00000185122 CDS Human protein_coding chr8:145535406 chr8:145535421 synonymous SNV . 0 36 hm5C_associated_SNPs_16538 0 0 1 0 1 HSF1 chr8:145535386 3'AG 145535386 Downstream 36bp
chr2 235943684 235943684 1 + G A BLCA 235943692 + 235943672 235943712 41 CCAACTCCAATGGCCTCCCTCGCTGCAAGTCAGAGGGGACC CCAACTCCAATGACCTCCCTCGCTGCAAGTCAGAGGGGACC < 41bp 1 0.179054833884083 1 0.0920104682445526 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235943692 chr2:235943684 nonsynonymous SNV 0.755 0 13 hm5C_associated_SNPs_16540 0 0 1 0 2 SH3BP4 chr2:235943599 3'AG 235943599 Downstream 86bp
chr2 235943684 235943684 1 + G A BLCA 235943692 + 235943672 235943712 41 CCAACTCCAATGGCCTCCCTCGCTGCAAGTCAGAGGGGACC CCAACTCCAATGACCTCCCTCGCTGCAAGTCAGAGGGGACC < 41bp 1 0.179054833884083 1 0.0920104682445526 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235943692 chr2:235943684 nonsynonymous SNV 0.755 0 13 hm5C_associated_SNPs_16540 0 0 1 0 2 SH3BP4 chr2:235943764 5'GT 235943764 Upstream 81bp
chr8 1791542 1791542 1 + G C BLCA 1791535 + 1791515 1791555 41 GCAGGAGCTCCTTCCCTTAACAGAGCTGAGAGAGGCATCTG GCAGGAGCTCCTTCCCTTAACAGAGCTCAGAGAGGCATCTG < 41bp 1 0.664620450884637 1 0.403244733810425 experiment 0.670759098230726 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1791535 chr8:1791542 nonsynonymous SNV 0.000 0 28 hm5C_associated_SNPs_16542 0 0 1 0 2 ARHGEF10 chr8:1791519 3'AG 1791519 Downstream 24bp
chr8 1791542 1791542 1 + G C BLCA 1791535 + 1791515 1791555 41 GCAGGAGCTCCTTCCCTTAACAGAGCTGAGAGAGGCATCTG GCAGGAGCTCCTTCCCTTAACAGAGCTCAGAGAGGCATCTG < 41bp 1 0.664620450884637 1 0.403244733810425 experiment 0.670759098230726 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1791535 chr8:1791542 nonsynonymous SNV 0.000 0 28 hm5C_associated_SNPs_16542 0 0 1 0 2 ARHGEF10 chr8:1791602 5'GT 1791602 Upstream 61bp
chr8 1791542 1791542 1 + G C BLCA 1791550 + 1791530 1791570 41 CTTAACAGAGCTGAGAGAGGCATCTGGAGCTGCAGCATGGA CTTAACAGAGCTCAGAGAGGCATCTGGAGCTGCAGCATGGA < 41bp 1 0.278487665268487 1 0.217805743217468 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1791550 chr8:1791542 nonsynonymous SNV 0.000 0 13 hm5C_associated_SNPs_16543 0 0 1 0 2 ARHGEF10 chr8:1791519 3'AG 1791519 Downstream 24bp
chr8 1791542 1791542 1 + G C BLCA 1791550 + 1791530 1791570 41 CTTAACAGAGCTGAGAGAGGCATCTGGAGCTGCAGCATGGA CTTAACAGAGCTCAGAGAGGCATCTGGAGCTGCAGCATGGA < 41bp 1 0.278487665268487 1 0.217805743217468 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1791550 chr8:1791542 nonsynonymous SNV 0.000 0 13 hm5C_associated_SNPs_16543 0 0 1 0 2 ARHGEF10 chr8:1791602 5'GT 1791602 Upstream 61bp
chr8 145150898 145150898 1 + C T BLCA 145150914 + 145150894 145150934 41 GTCTCACCGTGGCCTCCTCTCTTCCTTGGACCACACCAGGT GTCTTACCGTGGCCTCCTCTCTTCCTTGGACCACACCAGGT < 41bp 1 0.333053564890733 1 0.678526341915131 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145150914 chr8:145150898 nonsynonymous SNV 0.961 4 5 hm5C_associated_SNPs_16544 0 0 1 0 1 CYC1 chr8:145150932 5'GT 145150932 Upstream 35bp
chr5 167826567 167826567 1 + G A BLCA 167826565 + 167826545 167826585 41 AAGAGCGTGGCTTTCAGACCCTGAAGAAGTAAGTACACCCT AAGAGCGTGGCTTTCAGACCCTAAAGAAGTAAGTACACCCT < 41bp 1 0.534820578898643 1 0.263140916824341 experiment 0.930358842202714 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WWC1 ENSG00000113645 CDS Human protein_coding chr5:167826565 chr5:167826567 synonymous SNV . 0 23 hm5C_associated_SNPs_16546 0 0 1 0 2 WWC1 chr5:167826493 3'AG 167826493 Downstream 75bp
chr5 167826567 167826567 1 + G A BLCA 167826565 + 167826545 167826585 41 AAGAGCGTGGCTTTCAGACCCTGAAGAAGTAAGTACACCCT AAGAGCGTGGCTTTCAGACCCTAAAGAAGTAAGTACACCCT < 41bp 1 0.534820578898643 1 0.263140916824341 experiment 0.930358842202714 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WWC1 ENSG00000113645 CDS Human protein_coding chr5:167826565 chr5:167826567 synonymous SNV . 0 23 hm5C_associated_SNPs_16546 0 0 1 0 2 WWC1 chr5:167826572 5'GT 167826572 Upstream 6bp
chr12 109684179 109684179 1 + G A BLCA 109684168 + 109684148 109684188 41 TCCCAAAATTTACGTGGCAGCCAACAGTGGCGCCCGTATTG TCCCAAAATTTACGTGGCAGCCAACAGTGGCACCCGTATTG < 41bp 1 0.0334448378104284 1 0.290416598320007 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109684168 chr12:109684179 nonsynonymous SNV 0.995 5 32 hm5C_associated_SNPs_16547 0 0 0 0 1 ACACB chr12:109684253 5'GT 109684253 Upstream 75bp
chr19 17417054 17417054 1 + C A BLCA 17417040 + 17417020 17417060 41 CCTCCCCACCCCGCAGCAGGCCCGGGGCAAGGCTCGCGGGA CCTCCCCACCCCGCAGCAGGCCCGGGGCAAGGCTAGCGGGA < 41bp 1 0.769858803568448 1 0.688392162322998 experiment 0.460282392863105 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRPL34 ENSG00000130312 CDS Human protein_coding chr19:17417040 chr19:17417054 nonsynonymous SNV 0.350 4 35 hm5C_associated_SNPs_16548 0 0 1 0 1 MRPL34 chr19:17416975 3'AG 17416975 Downstream 80bp
chr19 17417054 17417054 1 + C A BLCA 17417041 + 17417021 17417061 41 CTCCCCACCCCGCAGCAGGCCCGGGGCAAGGCTCGCGGGAA CTCCCCACCCCGCAGCAGGCCCGGGGCAAGGCTAGCGGGAA < 41bp 1 0.706936207827981 1 0.724814832210541 experiment 0.586127584344039 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRPL34 ENSG00000130312 CDS Human protein_coding chr19:17417041 chr19:17417054 nonsynonymous SNV 0.350 4 34 hm5C_associated_SNPs_16549 0 0 1 0 1 MRPL34 chr19:17416975 3'AG 17416975 Downstream 80bp
chr19 17417054 17417054 1 + C A BLCA 17417047 + 17417027 17417067 41 ACCCCGCAGCAGGCCCGGGGCAAGGCTCGCGGGAATGAGTA ACCCCGCAGCAGGCCCGGGGCAAGGCTAGCGGGAATGAGTA < 41bp 1 0.793565810322314 1 0.646205186843872 experiment 0.412868379355373 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRPL34 ENSG00000130312 CDS Human protein_coding chr19:17417047 chr19:17417054 nonsynonymous SNV 0.350 4 28 hm5C_associated_SNPs_16550 0 0 1 0 1 MRPL34 chr19:17416975 3'AG 17416975 Downstream 80bp
chr16 22271812 22271812 1 + A G BLCA 22271796 + 22271776 22271816 41 TGCCCAGATTGGCCAGTGTTCAGTGACCTCGATAACATGGC TGCCCAGATTGGCCAGTGTTCAGTGACCTCGATAACGTGGC < 41bp 1 0.379747379260473 1 0.746522307395935 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EEF2K ENSG00000103319 CDS Human protein_coding chr16:22271796 chr16:22271812 nonsynonymous SNV 0.802 0 37 hm5C_associated_SNPs_16551 0 0 1 0 2 EEF2K chr16:22271783 3'AG 22271783 Downstream 30bp
chr16 22271812 22271812 1 + A G BLCA 22271796 + 22271776 22271816 41 TGCCCAGATTGGCCAGTGTTCAGTGACCTCGATAACATGGC TGCCCAGATTGGCCAGTGTTCAGTGACCTCGATAACGTGGC < 41bp 1 0.379747379260473 1 0.746522307395935 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EEF2K ENSG00000103319 CDS Human protein_coding chr16:22271796 chr16:22271812 nonsynonymous SNV 0.802 0 37 hm5C_associated_SNPs_16551 0 0 1 0 2 EEF2K chr16:22271850 5'GT 22271850 Upstream 39bp
chr1 10328316 10328316 1 + G A BLCA 10328306 + 10328286 10328326 41 AAACACGATAATGAGACCAACCTTTCCACTGAGAAGGTAGG AAACACGATAATGAGACCAACCTTTCCACTAAGAAGGTAGG < 41bp 1 0.0032145139349926 1 0.0657700300216675 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10328306 chr1:10328316 nonsynonymous SNV 0.999 5 31 hm5C_associated_SNPs_16552 0 0 1 0 1 KIF1B chr1:10328321 5'GT 10328321 Upstream 6bp
chr10 73992847 73992847 1 + G T BLCA 73992860 + 73992840 73992880 41 AGCAGCTGCTGGGATTCACCCCCTCTTCAGGTTGATACTGC AGCAGCTTCTGGGATTCACCCCCTCTTCAGGTTGATACTGC < 41bp 1 0.167196072174654 1 0.0890012383460999 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANAPC16 ENSG00000166295 CDS Human protein_coding chr10:73992860 chr10:73992847 synonymous SNV . 0 8 hm5C_associated_SNPs_16555 0 0 1 0 1 ANAPC16 chr10:73992759 3'AG 73992759 Downstream 89bp
chr22 20079084 20079084 1 + C A BLCA 20079093 + 20079073 20079113 41 GCAGGCGGAGTCCGAGAGGCCCATCTTGCCAGCCAATCAGA GCAGGCGGAGTACGAGAGGCCCATCTTGCCAGCCAATCAGA < 41bp 1 0.0537462428228983 1 0.130802482366562 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGCR8 ENSG00000128191 CDS Human protein_coding chr22:20079093 chr22:20079084 nonsynonymous SNV 0.926 2 12 hm5C_associated_SNPs_16556 0 0 1 0 1 DGCR8 chr22:20079155 5'GT 20079155 Upstream 72bp
chr1 12061880 12061880 1 + A T BLCA 12061870 + 12061850 12061890 41 AAGTGAGGATGTTTGAGTTTCAGAATTTTGAGAGGAGATTT AAGTGAGGATGTTTGAGTTTCAGAATTTTGTGAGGAGATTT < 41bp 1 0.611597846926254 1 0.550802826881409 experiment 0.776804306147491 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061870 chr1:12061880 nonsynonymous SNV 0.996 5 31 hm5C_associated_SNPs_16557 0 0 1 0 2 MFN2 chr1:12061826 3'AG 12061826 Downstream 55bp
chr1 12061880 12061880 1 + A T BLCA 12061870 + 12061850 12061890 41 AAGTGAGGATGTTTGAGTTTCAGAATTTTGAGAGGAGATTT AAGTGAGGATGTTTGAGTTTCAGAATTTTGTGAGGAGATTT < 41bp 1 0.611597846926254 1 0.550802826881409 experiment 0.776804306147491 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061870 chr1:12061880 nonsynonymous SNV 0.996 5 31 hm5C_associated_SNPs_16557 0 0 1 0 2 MFN2 chr1:12061893 5'GT 12061893 Upstream 14bp
chr11 63996776 63996776 1 + G A BLCA 63996766 + 63996746 63996786 41 CAGCCCCTGCTGTTGGGCATCGCCCGAAATGAGACCAGTGC CAGCCCCTGCTGTTGGGCATCGCCCGAAATAAGACCAGTGC < 41bp 1 0.535875224621213 1 0.35752409696579 experiment 0.928249550757573 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63996766 chr11:63996776 nonsynonymous SNV 0.943 1 31 hm5C_associated_SNPs_16559 0 0 1 0 2 NUDT22 chr11:63996719 3'AG 63996719 Downstream 58bp
chr11 63996776 63996776 1 + G A BLCA 63996766 + 63996746 63996786 41 CAGCCCCTGCTGTTGGGCATCGCCCGAAATGAGACCAGTGC CAGCCCCTGCTGTTGGGCATCGCCCGAAATAAGACCAGTGC < 41bp 1 0.535875224621213 1 0.35752409696579 experiment 0.928249550757573 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63996766 chr11:63996776 nonsynonymous SNV 0.943 1 31 hm5C_associated_SNPs_16559 0 0 1 0 2 NUDT22 chr11:63996816 5'GT 63996816 Upstream 41bp
chr11 598428 598428 1 + C T BLCA 598413 + 598393 598433 41 GTCTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGCGACTG GTCTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGTGACTG < 41bp 1 0.109250908914364 1 0.35287743806839 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:598413 chr11:598428 nonsynonymous SNV 0.003 1 36 hm5C_associated_SNPs_16563 0 0 1 0 2 PHRF1 chr11:598373 3'AG 598373 Downstream 56bp
chr11 598428 598428 1 + C T BLCA 598413 + 598393 598433 41 GTCTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGCGACTG GTCTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGTGACTG < 41bp 1 0.109250908914364 1 0.35287743806839 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:598413 chr11:598428 nonsynonymous SNV 0.003 1 36 hm5C_associated_SNPs_16563 0 0 1 0 2 PHRF1 chr11:598502 5'GT 598502 Upstream 75bp
chr5 154174850 154174850 1 + C G BLCA 154174837 + 154174817 154174857 41 ACCCTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCAC ACCCTTATTGCTTCCTTCCACCGAGTGCAGGCCGTTACCAC < 41bp 1 0.320508491316999 1 0.469496250152588 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154174837 chr5:154174850 nonsynonymous SNV 0.996 4 34 hm5C_associated_SNPs_16564 0 0 1 0 1 LARP1 chr5:154174879 5'GT 154174879 Upstream 30bp
chr5 154174850 154174850 1 + C G BLCA 154174838 + 154174818 154174858 41 CCCTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCACT CCCTTATTGCTTCCTTCCACCGAGTGCAGGCCGTTACCACT < 41bp 1 0.371957873739729 1 0.888797879219055 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154174838 chr5:154174850 nonsynonymous SNV 0.996 4 33 hm5C_associated_SNPs_16565 0 0 1 0 1 LARP1 chr5:154174879 5'GT 154174879 Upstream 30bp
chr19 19649166 19649166 1 + C G BLCA 19649177 + 19649157 19649197 41 CCATGGCGTCGCTGCTGCCACTGCTCTGTCTCTGTGTCGTC CCATGGCGTGGCTGCTGCCACTGCTCTGTCTCTGTGTCGTC < 41bp 1 0.505315729792496 1 0.160707980394363 experiment 0.989368540415008 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CILP2 ENSG00000160161 CDS Human protein_coding chr19:19649177 chr19:19649166 nonsynonymous SNV 0.063 2 10 hm5C_associated_SNPs_16566 0 0 0 0 1 CILP2 chr19:19649222 5'GT 19649222 Upstream 57bp
chr9 137702143 137702143 1 + A G BLCA 137702152 + 137702132 137702172 41 GCAAGGGGGACAAAGGAGAACAGGTAAGTATTGGCACGGGG GCAAGGGGGACGAAGGAGAACAGGTAAGTATTGGCACGGGG < 41bp 1 0.514812749835324 1 0.59991854429245 experiment 0.970374500329353 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137702152 chr9:137702143 nonsynonymous SNV 0.988 4 12 hm5C_associated_SNPs_16567 0 0 0 0 2 COL5A1 chr9:137702101 3'AG 137702101 Downstream 43bp
chr9 137702143 137702143 1 + A G BLCA 137702152 + 137702132 137702172 41 GCAAGGGGGACAAAGGAGAACAGGTAAGTATTGGCACGGGG GCAAGGGGGACGAAGGAGAACAGGTAAGTATTGGCACGGGG < 41bp 1 0.514812749835324 1 0.59991854429245 experiment 0.970374500329353 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137702152 chr9:137702143 nonsynonymous SNV 0.988 4 12 hm5C_associated_SNPs_16567 0 0 0 0 2 COL5A1 chr9:137702154 5'GT 137702154 Upstream 12bp
chr17 76167700 76167700 1 + C T BLCA 76167712 + 76167692 76167732 41 GCAGCCATCACCTTCAGCTTCTTTTCCATCTTCTCCTGGGT GCAGCCATTACCTTCAGCTTCTTTTCCATCTTCTCCTGGGT < 41bp 1 0.0521742619516304 1 0.0362574756145477 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167712 chr17:76167700 synonymous SNV . 0 9 hm5C_associated_SNPs_16568 0 0 1 0 1 SYNGR2 chr17:76167730 5'GT 76167730 Upstream 31bp
chr16 89628100 89628100 1 + C T BLCA 89628120 + 89628100 89628140 41 CGCTCCAAACTCATCCTCTTCCCCAGGAAGCCCTCGGCCCC TGCTCCAAACTCATCCTCTTCCCCAGGAAGCCCTCGGCCCC < 41bp 1 0.682731703765912 1 0.349055290222168 experiment 0.634536592468176 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89628120 chr16:89628100 nonsynonymous SNV 0.998 0 1 hm5C_associated_SNPs_16572 0 0 1 0 3 RPL13 chr16:89628004 3'AG 89628004 Downstream 97bp
chr16 89628100 89628100 1 + C T BLCA 89628120 + 89628100 89628140 41 CGCTCCAAACTCATCCTCTTCCCCAGGAAGCCCTCGGCCCC TGCTCCAAACTCATCCTCTTCCCCAGGAAGCCCTCGGCCCC < 41bp 1 0.682731703765912 1 0.349055290222168 experiment 0.634536592468176 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89628120 chr16:89628100 nonsynonymous SNV 0.998 0 1 hm5C_associated_SNPs_16572 0 0 1 0 3 RPL13 chr16:89628073 3'AG 89628073 Downstream 28bp
chr16 89628100 89628100 1 + C T BLCA 89628120 + 89628100 89628140 41 CGCTCCAAACTCATCCTCTTCCCCAGGAAGCCCTCGGCCCC TGCTCCAAACTCATCCTCTTCCCCAGGAAGCCCTCGGCCCC < 41bp 1 0.682731703765912 1 0.349055290222168 experiment 0.634536592468176 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89628120 chr16:89628100 nonsynonymous SNV 0.998 0 1 hm5C_associated_SNPs_16572 0 0 1 0 3 RPL13 chr16:89628159 5'GT 89628159 Upstream 60bp
chr16 89628134 89628134 1 + C T BLCA 89628120 + 89628100 89628140 41 CGCTCCAAACTCATCCTCTTCCCCAGGAAGCCCTCGGCCCC CGCTCCAAACTCATCCTCTTCCCCAGGAAGCCCTTGGCCCC < 41bp 1 0.669462731675703 1 0.465872913599014 experiment 0.661074536648593 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89628120 chr16:89628134 nonsynonymous SNV 0.657 0 35 hm5C_associated_SNPs_16579 0 0 0 0 2 RPL13 chr16:89628073 3'AG 89628073 Downstream 62bp
chr16 89628134 89628134 1 + C T BLCA 89628120 + 89628100 89628140 41 CGCTCCAAACTCATCCTCTTCCCCAGGAAGCCCTCGGCCCC CGCTCCAAACTCATCCTCTTCCCCAGGAAGCCCTTGGCCCC < 41bp 1 0.669462731675703 1 0.465872913599014 experiment 0.661074536648593 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89628120 chr16:89628134 nonsynonymous SNV 0.657 0 35 hm5C_associated_SNPs_16579 0 0 0 0 2 RPL13 chr16:89628159 5'GT 89628159 Upstream 26bp
chr16 89628134 89628134 1 + C T BLCA 89628153 + 89628133 89628173 41 TCGGCCCCCAAGAAGGGAGACAGTTCTGTGAGTACACGGCT TTGGCCCCCAAGAAGGGAGACAGTTCTGTGAGTACACGGCT < 41bp 1 0.154227657294642 1 0.0816806256771088 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89628153 chr16:89628134 nonsynonymous SNV 0.657 0 2 hm5C_associated_SNPs_16580 0 0 0 0 2 RPL13 chr16:89628073 3'AG 89628073 Downstream 62bp
chr16 89628134 89628134 1 + C T BLCA 89628153 + 89628133 89628173 41 TCGGCCCCCAAGAAGGGAGACAGTTCTGTGAGTACACGGCT TTGGCCCCCAAGAAGGGAGACAGTTCTGTGAGTACACGGCT < 41bp 1 0.154227657294642 1 0.0816806256771088 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89628153 chr16:89628134 nonsynonymous SNV 0.657 0 2 hm5C_associated_SNPs_16580 0 0 0 0 2 RPL13 chr16:89628159 5'GT 89628159 Upstream 26bp
chr22 23596140 23596140 1 + C G BLCA 23596125 + 23596105 23596145 41 AGCAGCAAGGGCAGGGGCAGCCGGGATGCGCTGGTCTCGGG AGCAGCAAGGGCAGGGGCAGCCGGGATGCGCTGGTGTCGGG < 41bp 1 0.610132429618267 1 0.708578765392303 experiment 0.779735140763466 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23596125 chr22:23596140 synonymous SNV . 0 36 hm5C_associated_SNPs_16581 0 0 1 0 1 BCR chr22:23596167 5'GT 23596167 Upstream 28bp
chr1 151063031 151063031 1 + C T BLCA 151063038 + 151063018 151063058 41 GACATGCGCACATCGTGGAACTGCTTGTTCGGGTAAAGCAA GACATGCGCACATTGTGGAACTGCTTGTTCGGGTAAAGCAA < 41bp 1 0.436387369685958 1 0.156691610813141 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GABPB2 ENSG00000143458 CDS Human protein_coding chr1:151063038 chr1:151063031 synonymous SNV . 0 14 hm5C_associated_SNPs_16582 0 0 0 0 1 GABPB2 chr1:151063049 5'GT 151063049 Upstream 19bp
chr2 202141606 202141606 1 + C G BLCA 202141594 + 202141574 202141614 41 AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAATCA AAAAGCAAACCTCGGGGATACTGTCTGATCATGAACAATCA < 41bp 1 0.25360957100215 1 0.214373171329498 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CASP8 ENSG00000064012 CDS Human protein_coding chr2:202141594 chr2:202141606 nonsynonymous SNV 0.988 2 33 hm5C_associated_SNPs_16583 0 0 1 0 1 CASP8 chr2:202141550 3'AG 202141550 Downstream 57bp
chr2 38908553 38908553 1 + C T BLCA 38908545 + 38908525 38908565 41 ACACCCTGGATGGCGGAGAGCTCATAGTCAACTACAGAGCA ACACCCTGGATGGCGGAGAGCTCATAGTTAACTACAGAGCA < 41bp 1 0.306247317343882 1 0.113831579685211 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GALM ENSG00000143891 CDS Human protein_coding chr2:38908545 chr2:38908553 synonymous SNV . 0 29 hm5C_associated_SNPs_16584 0 0 1 0 1 GALM chr2:38908628 5'GT 38908628 Upstream 76bp
chr7 87530136 87530136 1 + G C BLCA 87530119 + 87530099 87530139 41 AGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAGAGAAG AGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAGACAAG < 41bp 1 0.287963309711854 1 0.619842767715454 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530119 chr7:87530136 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_16585 0 0 0 0 2 DBF4 chr7:87530079 3'AG 87530079 Downstream 58bp
chr7 87530136 87530136 1 + G C BLCA 87530119 + 87530099 87530139 41 AGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAGAGAAG AGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAGACAAG < 41bp 1 0.287963309711854 1 0.619842767715454 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530119 chr7:87530136 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_16585 0 0 0 0 2 DBF4 chr7:87530193 5'GT 87530193 Upstream 58bp
chr7 87530136 87530136 1 + G C BLCA 87530122 + 87530102 87530142 41 ATGGTGGAACCTCAATTCAACTCCAGTTGAAAGAGAAGAAG ATGGTGGAACCTCAATTCAACTCCAGTTGAAAGACAAGAAG < 41bp 1 0.782831603654645 1 0.63298100233078 experiment 0.43433679269071 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530122 chr7:87530136 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_16586 0 0 0 0 2 DBF4 chr7:87530079 3'AG 87530079 Downstream 58bp
chr7 87530136 87530136 1 + G C BLCA 87530122 + 87530102 87530142 41 ATGGTGGAACCTCAATTCAACTCCAGTTGAAAGAGAAGAAG ATGGTGGAACCTCAATTCAACTCCAGTTGAAAGACAAGAAG < 41bp 1 0.782831603654645 1 0.63298100233078 experiment 0.43433679269071 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530122 chr7:87530136 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_16586 0 0 0 0 2 DBF4 chr7:87530193 5'GT 87530193 Upstream 58bp
chr7 87530136 87530136 1 + G C BLCA 87530124 + 87530104 87530144 41 GGTGGAACCTCAATTCAACTCCAGTTGAAAGAGAAGAAGAA GGTGGAACCTCAATTCAACTCCAGTTGAAAGACAAGAAGAA < 41bp 1 0.34304092933151 1 0.665582358837128 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530124 chr7:87530136 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_16587 0 0 0 0 2 DBF4 chr7:87530079 3'AG 87530079 Downstream 58bp
chr7 87530136 87530136 1 + G C BLCA 87530124 + 87530104 87530144 41 GGTGGAACCTCAATTCAACTCCAGTTGAAAGAGAAGAAGAA GGTGGAACCTCAATTCAACTCCAGTTGAAAGACAAGAAGAA < 41bp 1 0.34304092933151 1 0.665582358837128 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530124 chr7:87530136 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_16587 0 0 0 0 2 DBF4 chr7:87530193 5'GT 87530193 Upstream 58bp
chr21 45736388 45736388 1 + C T BLCA 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACGTGCAGCGGGGAGGGACGCCCTTTGCCTTCGACCGGA < 41bp 1 0.476207090695892 1 0.260987907648087 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736388 nonsynonymous SNV 0.411 5 27 hm5C_associated_SNPs_16588 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 74bp
chr21 45736388 45736388 1 + C T BLCA 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACGTGCAGCGGGGAGGGACGCCCTTTGCCTTCGACCGGA < 41bp 1 0.476207090695892 1 0.260987907648087 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736388 nonsynonymous SNV 0.411 5 27 hm5C_associated_SNPs_16588 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 20bp
chr21 45736388 45736388 1 + C T BLCA 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACGTGCAGCGGGGAGGGACGCCCTTTGCCTTCGACCGGATC < 41bp 1 0.118826923279986 1 0.0400905013084412 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736388 nonsynonymous SNV 0.411 5 25 hm5C_associated_SNPs_16589 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 74bp
chr21 45736388 45736388 1 + C T BLCA 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACGTGCAGCGGGGAGGGACGCCCTTTGCCTTCGACCGGATC < 41bp 1 0.118826923279986 1 0.0400905013084412 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736388 nonsynonymous SNV 0.411 5 25 hm5C_associated_SNPs_16589 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 20bp
chr21 45736388 45736388 1 + C T BLCA 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CGTGCAGCGGGGAGGGACGCCCTTTGCCTTCGACCGGATCC < 41bp 1 0.0369643570566952 1 0.0730120241641998 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736388 nonsynonymous SNV 0.411 5 24 hm5C_associated_SNPs_16590 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 74bp
chr21 45736388 45736388 1 + C T BLCA 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CGTGCAGCGGGGAGGGACGCCCTTTGCCTTCGACCGGATCC < 41bp 1 0.0369643570566952 1 0.0730120241641998 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736388 nonsynonymous SNV 0.411 5 24 hm5C_associated_SNPs_16590 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 20bp
chr21 45736388 45736388 1 + C T BLCA 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT GTGCAGCGGGGAGGGACGCCCTTTGCCTTCGACCGGATCCT < 41bp 1 0.172533372666172 1 0.0633589923381805 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736388 nonsynonymous SNV 0.411 5 23 hm5C_associated_SNPs_16591 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 74bp
chr21 45736388 45736388 1 + C T BLCA 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT GTGCAGCGGGGAGGGACGCCCTTTGCCTTCGACCGGATCCT < 41bp 1 0.172533372666172 1 0.0633589923381805 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736388 nonsynonymous SNV 0.411 5 23 hm5C_associated_SNPs_16591 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 20bp
chr19 39208572 39208572 1 + C T BLCA 39208581 + 39208561 39208601 41 CCCCAGGACATCAACAATGGCTGGCAGCACTTGGAGCAGGC CCCCAGGACATTAACAATGGCTGGCAGCACTTGGAGCAGGC < 41bp 1 0.320607049647355 1 0.153390467166901 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39208581 chr19:39208572 synonymous SNV . 0 12 hm5C_associated_SNPs_16592 0 0 1 0 1 ACTN4 chr19:39208567 3'AG 39208567 Downstream 6bp
chr19 39208572 39208572 1 + C T BLCA 39208590 + 39208570 39208610 41 ATCAACAATGGCTGGCAGCACTTGGAGCAGGCTGAGAAGGG ATTAACAATGGCTGGCAGCACTTGGAGCAGGCTGAGAAGGG < 41bp 1 0.485976789391139 1 0.356881588697433 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39208590 chr19:39208572 synonymous SNV . 0 3 hm5C_associated_SNPs_16593 0 0 1 0 1 ACTN4 chr19:39208567 3'AG 39208567 Downstream 6bp
chr11 34167637 34167637 1 + G A BLCA 34167634 + 34167614 34167654 41 TTTTGATTTTTCTCTAGTGACAAGAAAAGGAAGTTAGAGGC TTTTGATTTTTCTCTAGTGACAAAAAAAGGAAGTTAGAGGC < 41bp 1 0.459042111737666 1 0.423616826534271 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34167634 chr11:34167637 synonymous SNV . 0 24 hm5C_associated_SNPs_16594 0 0 1 0 1 NAT10 chr11:34167631 3'AG 34167631 Downstream 7bp
chr8 21859708 21859708 1 + G C BLCA 21859721 + 21859701 21859741 41 CCAAGAAGAGGACCACACCCCTGAACCAGGAGAGCGACCGC CCAAGAACAGGACCACACCCCTGAACCAGGAGAGCGACCGC < 41bp 1 0.672233144915013 1 0.854190587997437 experiment 0.655533710169973 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21859721 chr8:21859708 nonsynonymous SNV 0.999 1 8 hm5C_associated_SNPs_16595 0 0 1 0 2 XPO7 chr8:21859623 3'AG 21859623 Downstream 86bp
chr8 21859708 21859708 1 + G C BLCA 21859721 + 21859701 21859741 41 CCAAGAAGAGGACCACACCCCTGAACCAGGAGAGCGACCGC CCAAGAACAGGACCACACCCCTGAACCAGGAGAGCGACCGC < 41bp 1 0.672233144915013 1 0.854190587997437 experiment 0.655533710169973 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21859721 chr8:21859708 nonsynonymous SNV 0.999 1 8 hm5C_associated_SNPs_16595 0 0 1 0 2 XPO7 chr8:21859783 5'GT 21859783 Upstream 76bp
chr19 54710425 54710425 1 + C T BLCA 54710423 + 54710403 54710443 41 TCCCTATCTCCTATGCAGCCCTCGGAGGTGATGGGTGTGAA TCCCTATCTCCTATGCAGCCCTTGGAGGTGATGGGTGTGAA < 41bp 1 0.360087254147452 1 0.171262264251709 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS9 ENSG00000170889 CDS Human protein_coding chr19:54710423 chr19:54710425 nonsynonymous SNV 0.084 3 23 hm5C_associated_SNPs_16596 0 0 1 0 1 RPS9 chr19:54710421 3'AG 54710421 Downstream 5bp
chr1 163306609 163306609 1 + G A BLCA 163306605 + 163306585 163306625 41 ATTCACTTCAGAGAAGCATGCCGTGAAACGTATATGGAATT ATTCACTTCAGAGAAGCATGCCGTAAAACGTATATGGAATT < 41bp 1 0.246732691030177 1 0.3482785820961 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUF2 ENSG00000143228 CDS Human protein_coding chr1:163306605 chr1:163306609 nonsynonymous SNV 0.988 2 25 hm5C_associated_SNPs_16597 0 0 1 0 2 NUF2 chr1:163306541 3'AG 163306541 Downstream 69bp
chr1 163306609 163306609 1 + G A BLCA 163306605 + 163306585 163306625 41 ATTCACTTCAGAGAAGCATGCCGTGAAACGTATATGGAATT ATTCACTTCAGAGAAGCATGCCGTAAAACGTATATGGAATT < 41bp 1 0.246732691030177 1 0.3482785820961 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUF2 ENSG00000143228 CDS Human protein_coding chr1:163306605 chr1:163306609 nonsynonymous SNV 0.988 2 25 hm5C_associated_SNPs_16597 0 0 1 0 2 NUF2 chr1:163306638 5'GT 163306638 Upstream 30bp
chr8 145150823 145150823 1 + G C BLCA 145150830 + 145150810 145150850 41 GGCAGGGGGTGCGGGGCTGGCCATGGCTCTGCATTCGGCTG GGCAGGGGGTGCGCGGCTGGCCATGGCTCTGCATTCGGCTG < 41bp 1 0.481438288093911 1 0.34917151927948 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145150830 chr8:145150823 nonsynonymous SNV 0.749 4 14 hm5C_associated_SNPs_16599 0 0 1 0 1 CYC1 chr8:145150736 3'AG 145150736 Downstream 88bp
chr8 107754479 107754479 1 + G A BLCA 107754474 + 107754454 107754494 41 TTGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC TTGGTGCGTTAGCATCTGAGCCACTAAAAGTGAGTGATGGC < 41bp 1 0.0529830148230362 1 0.0894170105457306 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754474 chr8:107754479 synonymous SNV . 0 26 hm5C_associated_SNPs_16600 0 0 0 0 2 OXR1 chr8:107754450 3'AG 107754450 Downstream 30bp
chr8 107754479 107754479 1 + G A BLCA 107754474 + 107754454 107754494 41 TTGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC TTGGTGCGTTAGCATCTGAGCCACTAAAAGTGAGTGATGGC < 41bp 1 0.0529830148230362 1 0.0894170105457306 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754474 chr8:107754479 synonymous SNV . 0 26 hm5C_associated_SNPs_16600 0 0 0 0 2 OXR1 chr8:107754545 5'GT 107754545 Upstream 67bp
chr8 107754479 107754479 1 + G A BLCA 107754475 + 107754455 107754495 41 TGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT TGGTGCGTTAGCATCTGAGCCACTAAAAGTGAGTGATGGCT < 41bp 1 0.248768525977469 1 0.139070957899094 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754475 chr8:107754479 synonymous SNV . 0 25 hm5C_associated_SNPs_16601 0 0 0 0 2 OXR1 chr8:107754450 3'AG 107754450 Downstream 30bp
chr8 107754479 107754479 1 + G A BLCA 107754475 + 107754455 107754495 41 TGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT TGGTGCGTTAGCATCTGAGCCACTAAAAGTGAGTGATGGCT < 41bp 1 0.248768525977469 1 0.139070957899094 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754475 chr8:107754479 synonymous SNV . 0 25 hm5C_associated_SNPs_16601 0 0 0 0 2 OXR1 chr8:107754545 5'GT 107754545 Upstream 67bp
chr1 179310414 179310414 1 + C T BLCA 179310411 + 179310391 179310431 41 TGTGTTAGCATATACACTGCCACCAGCTTCCCGGTTCATCA TGTGTTAGCATATACACTGCCACTAGCTTCCCGGTTCATCA < 41bp 1 0.493099700345287 1 0.0510377287864685 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SOAT1 ENSG00000057252 CDS Human protein_coding chr1:179310411 chr1:179310414 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_16602 0 0 1 0 1 SOAT1 chr1:179310445 5'GT 179310445 Upstream 32bp
chr1 162740264 162740264 1 + G T BLCA 162740248 + 162740228 162740268 41 TTCGCCCTGACTACCAGGAGCCATCCAGGCTGATACGAAAA TTCGCCCTGACTACCAGGAGCCATCCAGGCTGATACTAAAA < 41bp 1 0.0138365434095986 1 0.046593964099884 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162740248 chr1:162740264 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_16603 0 0 0 0 1 DDR2 chr1:162740302 5'GT 162740302 Upstream 39bp
chr3 12531405 12531405 1 + G A BLCA 12531390 + 12531370 12531410 41 CAATCCCTTTTGGTCAGGACCATGGTCCTCTGAAAGAATTC CAATCCCTTTTGGTCAGGACCATGGTCCTCTGAAAAAATTC < 41bp 1 0.312531318851308 1 0.185144662857056 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12531390 chr3:12531405 nonsynonymous SNV 0.009 1 36 hm5C_associated_SNPs_16606 0 0 1 0 1 TSEN2 chr3:12531488 5'GT 12531488 Upstream 84bp
chr16 57241992 57241992 1 + A G BLCA 57241985 + 57241965 57242005 41 TCCAGTGATCAGGAACCTCCCTATTCAATGATAACATTACA TCCAGTGATCAGGAACCTCCCTATTCAGTGATAACATTACA < 41bp 1 0.101821134582392 1 0.0488901436328888 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57241985 chr16:57241992 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_16607 0 0 1 0 2 RSPRY1 chr16:57241970 3'AG 57241970 Downstream 23bp
chr16 57241992 57241992 1 + A G BLCA 57241985 + 57241965 57242005 41 TCCAGTGATCAGGAACCTCCCTATTCAATGATAACATTACA TCCAGTGATCAGGAACCTCCCTATTCAGTGATAACATTACA < 41bp 1 0.101821134582392 1 0.0488901436328888 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57241985 chr16:57241992 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_16607 0 0 1 0 2 RSPRY1 chr16:57242022 5'GT 57242022 Upstream 31bp
chr1 114514536 114514536 1 + G A BLCA 114514546 + 114514526 114514566 41 CGAGCTCAACGCGGGGGGACCAGTGCAGCACAACCACTCAA CGAGCTCAACACGGGGGGACCAGTGCAGCACAACCACTCAA < 41bp 1 0.527302911446074 1 0.652550458908081 experiment 0.945394177107852 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114514546 chr1:114514536 nonsynonymous SNV 0.250 4 11 hm5C_associated_SNPs_16608 0 0 1 0 2 HIPK1 chr1:114514446 3'AG 114514446 Downstream 91bp
chr1 114514536 114514536 1 + G A BLCA 114514546 + 114514526 114514566 41 CGAGCTCAACGCGGGGGGACCAGTGCAGCACAACCACTCAA CGAGCTCAACACGGGGGGACCAGTGCAGCACAACCACTCAA < 41bp 1 0.527302911446074 1 0.652550458908081 experiment 0.945394177107852 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114514546 chr1:114514536 nonsynonymous SNV 0.250 4 11 hm5C_associated_SNPs_16608 0 0 1 0 2 HIPK1 chr1:114514576 5'GT 114514576 Upstream 41bp
chr4 152024203 152024203 1 + A C BLCA 152024223 + 152024203 152024243 41 AATGACTTGAAAGAAGTGGTCAATAAATTGTAAGTGTTTCT CATGACTTGAAAGAAGTGGTCAATAAATTGTAAGTGTTTCT < 41bp 1 0.338217075914618 1 0.103535771369934 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RPS3A ENSG00000145425 CDS Human protein_coding chr4:152024223 chr4:152024203 nonsynonymous SNV 0.999 1 1 hm5C_associated_SNPs_16609 0 0 1 0 1 RPS3A chr4:152024231 5'GT 152024231 Upstream 29bp
chr1 65871788 65871788 1 + C T BLCA 65871792 + 65871772 65871812 41 TGCCTGGGGGCCAGAACGAACGTGGGAAAGGATCAAGTAAT TGCCTGGGGGCCAGAATGAACGTGGGAAAGGATCAAGTAAT < 41bp 1 0.612654917168177 1 0.428588330745697 experiment 0.774690165663646 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65871792 chr1:65871788 synonymous SNV . 0 17 hm5C_associated_SNPs_16610 0 0 0 0 1 DNAJC6 chr1:65871816 5'GT 65871816 Upstream 29bp
chr3 183369003 183369003 1 + G A BLCA 183369020 + 183369000 183369040 41 CATGAAGCAAGACGGTACCACATACTTGGGAATGAAATGAT CATAAAGCAAGACGGTACCACATACTTGGGAATGAAATGAT < 41bp 1 0.1018304764915 1 0.208865523338318 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLHL24 ENSG00000114796 CDS Human protein_coding chr3:183369020 chr3:183369003 nonsynonymous SNV 0.999 4 4 hm5C_associated_SNPs_16611 0 0 1 0 1 KLHL24 chr3:183369064 5'GT 183369064 Upstream 62bp
chr20 47711290 47711290 1 + G C BLCA 47711273 + 47711253 47711293 41 CTTTCTTCCAATCCAGGACTCCATTATTACAGTCTTTGATT CTTTCTTCCAATCCAGGACTCCATTATTACAGTCTTTCATT < 41bp 1 0.0501662838751178 1 0.0806515216827393 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CSE1L ENSG00000124207 CDS Human protein_coding chr20:47711273 chr20:47711290 nonsynonymous SNV 0.990 4 38 hm5C_associated_SNPs_16612 0 0 1 0 1 CSE1L chr20:47711269 3'AG 47711269 Downstream 22bp
chr2 32656088 32656088 1 + C G BLCA 32656070 + 32656050 32656090 41 TAGAAGTTCAACAAGAACAGCAGCAAAGGAGGCATCCTCAA TAGAAGTTCAACAAGAACAGCAGCAAAGGAGGCATCCTGAA < 41bp 1 0.266504452621467 1 0.135700821876526 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32656070 chr2:32656088 nonsynonymous SNV 0.937 3 39 hm5C_associated_SNPs_16613 0 0 1 0 1 BIRC6 chr2:32656158 5'GT 32656158 Upstream 71bp
chr8 124787454 124787454 1 + C T BLCA 124787439 + 124787419 124787459 41 TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGCT TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTTATGCT < 41bp 1 0.344538647461827 1 0.105997383594513 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787439 chr8:124787454 synonymous SNV . 0 36 hm5C_associated_SNPs_16614 0 0 0 0 2 FAM91A1 chr8:124787387 3'AG 124787387 Downstream 68bp
chr8 124787454 124787454 1 + C T BLCA 124787439 + 124787419 124787459 41 TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGCT TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTTATGCT < 41bp 1 0.344538647461827 1 0.105997383594513 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787439 chr8:124787454 synonymous SNV . 0 36 hm5C_associated_SNPs_16614 0 0 0 0 2 FAM91A1 chr8:124787538 5'GT 124787538 Upstream 85bp
chr19 14040216 14040216 1 + C G BLCA 14040234 + 14040214 14040254 41 CTCAGTGTGCTGGCGTTTGACCAAGAGCGTCTGGAGCGGAA CTGAGTGTGCTGGCGTTTGACCAAGAGCGTCTGGAGCGGAA < 41bp 1 0.393170504698314 1 0.601904153823853 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14040234 chr19:14040216 synonymous SNV . 0 3 hm5C_associated_SNPs_16615 0 0 0 0 2 CC2D1A chr19:14040192 3'AG 14040192 Downstream 25bp
chr19 14040216 14040216 1 + C G BLCA 14040234 + 14040214 14040254 41 CTCAGTGTGCTGGCGTTTGACCAAGAGCGTCTGGAGCGGAA CTGAGTGTGCTGGCGTTTGACCAAGAGCGTCTGGAGCGGAA < 41bp 1 0.393170504698314 1 0.601904153823853 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14040234 chr19:14040216 synonymous SNV . 0 3 hm5C_associated_SNPs_16615 0 0 0 0 2 CC2D1A chr19:14040255 5'GT 14040255 Upstream 40bp
chr10 71855428 71855428 1 + G A BLCA 71855433 + 71855413 71855453 41 TCCTTAACCCAGAGTGACATCAGCCATATTGGCTCCATGAG TCCTTAACCCAGAGTAACATCAGCCATATTGGCTCCATGAG < 41bp 1 0.432937717802807 1 0.342587500810623 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71855433 chr10:71855428 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_16616 0 0 1 0 2 H2AFY2 chr10:71855410 3'AG 71855410 Downstream 19bp
chr10 71855428 71855428 1 + G A BLCA 71855433 + 71855413 71855453 41 TCCTTAACCCAGAGTGACATCAGCCATATTGGCTCCATGAG TCCTTAACCCAGAGTAACATCAGCCATATTGGCTCCATGAG < 41bp 1 0.432937717802807 1 0.342587500810623 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71855433 chr10:71855428 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_16616 0 0 1 0 2 H2AFY2 chr10:71855509 5'GT 71855509 Upstream 82bp
chr20 3520912 3520912 1 + G A BLCA 3520926 + 3520906 3520946 41 GCTACAGAGTGTAGTTGGGACCATTTATATGTTTATGATGG GCTACAAAGTGTAGTTGGGACCATTTATATGTTTATGATGG < 41bp 1 0.0240011030503435 1 0.117464601993561 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATRN ENSG00000088812 CDS Human protein_coding chr20:3520926 chr20:3520912 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_16618 0 0 1 0 2 ATRN chr20:3520869 3'AG 3520869 Downstream 44bp
chr20 3520912 3520912 1 + G A BLCA 3520926 + 3520906 3520946 41 GCTACAGAGTGTAGTTGGGACCATTTATATGTTTATGATGG GCTACAAAGTGTAGTTGGGACCATTTATATGTTTATGATGG < 41bp 1 0.0240011030503435 1 0.117464601993561 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATRN ENSG00000088812 CDS Human protein_coding chr20:3520926 chr20:3520912 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_16618 0 0 1 0 2 ATRN chr20:3520982 5'GT 3520982 Upstream 71bp
chr16 70162999 70162999 1 + C T BLCA 70163015 + 70162995 70163035 41 CTTGCCCTGGCAAGTGCTGCCTCCCAAAATGGTGAGCAGGT CTTGTCCTGGCAAGTGCTGCCTCCCAAAATGGTGAGCAGGT < 41bp 1 0.17940292812741 1 0.269136428833008 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70163015 chr16:70162999 nonsynonymous SNV 0.997 3 5 hm5C_associated_SNPs_16619 0 0 1 0 1 PDPR chr16:70163025 5'GT 70163025 Upstream 27bp
chr1 76255006 76255006 1 + G C BLCA 76255012 + 76254992 76255032 41 CTAGTATCGGACATGATCCTCATCTTTTATACACTCTTAGT CTAGTATCGGACATCATCCTCATCTTTTATACACTCTTAGT < 41bp 1 0.247969349894415 1 0.0455408692359924 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76255012 chr1:76255006 nonsynonymous SNV 0.991 4 15 hm5C_associated_SNPs_16620 0 0 1 2 1 RABGGTB chr1:76255041 5'GT 76255041 Upstream 36bp
chr17 35310557 35310557 1 + G A BLCA 35310538 + 35310518 35310558 41 GATGGTGTGGTGATGACCTTCTCTAGTGTCAAAGTTTCTGA GATGGTGTGGTGATGACCTTCTCTAGTGTCAAAGTTTCTAA < 41bp 1 0.75078850947954 1 0.902595162391663 experiment 0.498422981040921 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AATF ENSG00000108270 CDS Human other chr17:35310538 chr17:35310557 nonsynonymous SNV 0.977 1 40 hm5C_associated_SNPs_16623 0 0 1 1 1 AATF chr17:35310596 5'GT 35310596 Upstream 40bp
chr2 153504334 153504334 1 + G A BLCA 153504343 + 153504323 153504363 41 ACCATACAGACGAGCCGATGCGGTGAGGAGAAGCGTCAGGC ACCATACAGACAAGCCGATGCGGTGAGGAGAAGCGTCAGGC < 41bp 1 0.379424838674575 1 0.443135619163513 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153504343 chr2:153504334 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_16624 0 0 1 0 1 FMNL2 chr2:153504310 3'AG 153504310 Downstream 25bp
chr1 145539408 145539408 1 + C G BLCA 145539395 + 145539375 145539415 41 TAGTGCAGAACCTGACTGAACCCCCAGGCCCACCTGTGCAT TAGTGCAGAACCTGACTGAACCCCCAGGCCCACGTGTGCAT < 41bp 1 0.0563170143709883 1 0.0237301886081696 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ITGA10 ENSG00000143127 CDS Human protein_coding chr1:145539395 chr1:145539408 nonsynonymous SNV . 0 34 hm5C_associated_SNPs_16625 0 0 0 0 2 ITGA10 chr1:145539365 3'AG 145539365 Downstream 44bp
chr1 145539408 145539408 1 + C G BLCA 145539395 + 145539375 145539415 41 TAGTGCAGAACCTGACTGAACCCCCAGGCCCACCTGTGCAT TAGTGCAGAACCTGACTGAACCCCCAGGCCCACGTGTGCAT < 41bp 1 0.0563170143709883 1 0.0237301886081696 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ITGA10 ENSG00000143127 CDS Human protein_coding chr1:145539395 chr1:145539408 nonsynonymous SNV . 0 34 hm5C_associated_SNPs_16625 0 0 0 0 2 ITGA10 chr1:145539445 5'GT 145539445 Upstream 38bp
chr15 100215643 100215643 1 + G C BLCA 100215637 + 100215617 100215657 41 CACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGTC CACTACAGACCTCACAGTGCCAAATGCAGCTGGAAGCAGTC < 41bp 1 0.285468328175961 1 0.431822955608368 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEF2A ENSG00000068305 CDS Human protein_coding chr15:100215637 chr15:100215643 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_16626 0 0 1 0 2 MEF2A chr15:100215604 3'AG 100215604 Downstream 40bp
chr15 100215643 100215643 1 + G C BLCA 100215637 + 100215617 100215657 41 CACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGTC CACTACAGACCTCACAGTGCCAAATGCAGCTGGAAGCAGTC < 41bp 1 0.285468328175961 1 0.431822955608368 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEF2A ENSG00000068305 CDS Human protein_coding chr15:100215637 chr15:100215643 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_16626 0 0 1 0 2 MEF2A chr15:100215663 5'GT 100215663 Upstream 21bp
chr1 230384989 230384989 1 + C T BLCA 230384969 + 230384949 230384989 41 ATTCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCC ATTCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCT < 41bp 1 0.475208474085747 1 0.125806212425232 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384969 chr1:230384989 nonsynonymous SNV 0.977 4 41 hm5C_associated_SNPs_16627 0 0 1 0 2 GALNT2 chr1:230384930 3'AG 230384930 Downstream 60bp
chr1 230384989 230384989 1 + C T BLCA 230384969 + 230384949 230384989 41 ATTCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCC ATTCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCT < 41bp 1 0.475208474085747 1 0.125806212425232 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384969 chr1:230384989 nonsynonymous SNV 0.977 4 41 hm5C_associated_SNPs_16627 0 0 1 0 2 GALNT2 chr1:230385017 5'GT 230385017 Upstream 29bp
chr1 230384989 230384989 1 + C T BLCA 230384971 + 230384951 230384991 41 TCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCCGG TCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCTGG < 41bp 1 0.256661757077664 1 0.0787017345428467 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384971 chr1:230384989 nonsynonymous SNV 0.977 4 39 hm5C_associated_SNPs_16628 0 0 1 0 2 GALNT2 chr1:230384930 3'AG 230384930 Downstream 60bp
chr1 230384989 230384989 1 + C T BLCA 230384971 + 230384951 230384991 41 TCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCCGG TCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCTGG < 41bp 1 0.256661757077664 1 0.0787017345428467 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384971 chr1:230384989 nonsynonymous SNV 0.977 4 39 hm5C_associated_SNPs_16628 0 0 1 0 2 GALNT2 chr1:230385017 5'GT 230385017 Upstream 29bp
chrX 148628334 148628334 1 + C G BLCA 148628325 + 148628305 148628345 41 ACTTTGCAATGCCCCGAAGACTTAACTCCCGATGAGGTTGT ACTTTGCAATGCCCCGAAGACTTAACTCCGGATGAGGTTGT < 41bp 1 0.369893794625721 1 0.135828107595444 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CXorf40A ENSG00000197620 CDS Human protein_coding chrX:148628325 chrX:148628334 synonymous SNV . 0 30 hm5C_associated_SNPs_16629 0 0 0 0 1 CXorf40A chrX:148628285 3'AG 148628285 Downstream 50bp
chr11 67075184 67075184 1 + G A BLCA 67075191 + 67075171 67075211 41 CTGGAGTCTCTGCGGCCTCCCAGCGCCGAGCCTGGCGGGTC CTGGAGTCTCTGCAGCCTCCCAGCGCCGAGCCTGGCGGGTC < 41bp 1 0.622739275141696 1 0.781343579292297 experiment 0.754521449716608 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075191 chr11:67075184 nonsynonymous SNV 0.806 3 14 hm5C_associated_SNPs_16630 0 0 0 0 1 SSH3 chr11:67075208 5'GT 67075208 Upstream 25bp
chr15 41105570 41105570 1 + T C BLCA 41105590 + 41105570 41105610 41 TGACGACGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGC CGACGACGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGC < 41bp 1 0.476569147581713 1 0.139754384756088 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105590 chr15:41105570 synonymous SNV . 0 1 hm5C_associated_SNPs_16631 0 0 0 0 2 ZFYVE19 chr15:41105536 3'AG 41105536 Downstream 35bp
chr15 41105570 41105570 1 + T C BLCA 41105590 + 41105570 41105610 41 TGACGACGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGC CGACGACGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGC < 41bp 1 0.476569147581713 1 0.139754384756088 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105590 chr15:41105570 synonymous SNV . 0 1 hm5C_associated_SNPs_16631 0 0 0 0 2 ZFYVE19 chr15:41105615 5'GT 41105615 Upstream 46bp
chr12 57485694 57485694 1 + G A BLCA 57485709 + 57485689 57485729 41 AGCCAGAAGGAAGAGGAGATCCGCAAATACAGCATCATCTA AGCCAAAAGGAAGAGGAGATCCGCAAATACAGCATCATCTA < 41bp 1 0.613142673392341 1 0.156465739011765 experiment 0.773714653215317 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAB2 ENSG00000166886 CDS Human protein_coding chr12:57485709 chr12:57485694 synonymous SNV . 0 6 hm5C_associated_SNPs_16633 0 0 1 0 1 NAB2 chr12:57485781 5'GT 57485781 Upstream 88bp
chr11 124747869 124747869 1 + G A BLCA 124747866 + 124747846 124747886 41 CCTGTATCTAGCTCAGACGGCCAGGGGCACGGCCGCCCCTG CCTGTATCTAGCTCAGACGGCCAAGGGCACGGCCGCCCCTG < 41bp 1 0.220128402685893 1 0.591294825077057 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747866 chr11:124747869 nonsynonymous SNV 0.131 0 24 hm5C_associated_SNPs_16647 0 0 0 0 1 ROBO3 chr11:124747833 3'AG 124747833 Downstream 37bp
chr11 124747869 124747869 1 + G A BLCA 124747867 + 124747847 124747887 41 CTGTATCTAGCTCAGACGGCCAGGGGCACGGCCGCCCCTGG CTGTATCTAGCTCAGACGGCCAAGGGCACGGCCGCCCCTGG < 41bp 1 0.52286398582487 1 0.895062923431396 experiment 0.95427202835026 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747867 chr11:124747869 nonsynonymous SNV 0.131 0 23 hm5C_associated_SNPs_16648 0 0 0 0 1 ROBO3 chr11:124747833 3'AG 124747833 Downstream 37bp
chr11 124747869 124747869 1 + G A BLCA 124747873 + 124747853 124747893 41 CTAGCTCAGACGGCCAGGGGCACGGCCGCCCCTGGCGAGGG CTAGCTCAGACGGCCAAGGGCACGGCCGCCCCTGGCGAGGG < 41bp 1 0.710518824910683 1 0.369149059057236 experiment 0.578962350178633 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747873 chr11:124747869 nonsynonymous SNV 0.131 0 17 hm5C_associated_SNPs_16649 0 0 0 0 1 ROBO3 chr11:124747833 3'AG 124747833 Downstream 37bp
chr11 124747869 124747869 1 + G A BLCA 124747881 + 124747861 124747901 41 GACGGCCAGGGGCACGGCCGCCCCTGGCGAGGGTCCTGTCT GACGGCCAAGGGCACGGCCGCCCCTGGCGAGGGTCCTGTCT < 41bp 1 0.133011891048596 1 0.151109874248505 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747881 chr11:124747869 nonsynonymous SNV 0.131 0 9 hm5C_associated_SNPs_16650 0 0 0 0 1 ROBO3 chr11:124747833 3'AG 124747833 Downstream 37bp
chr11 124747869 124747869 1 + G A BLCA 124747882 + 124747862 124747902 41 ACGGCCAGGGGCACGGCCGCCCCTGGCGAGGGTCCTGTCTA ACGGCCAAGGGCACGGCCGCCCCTGGCGAGGGTCCTGTCTA < 41bp 1 0.160139755574896 1 0.0547613203525543 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747882 chr11:124747869 nonsynonymous SNV 0.131 0 8 hm5C_associated_SNPs_16651 0 0 0 0 1 ROBO3 chr11:124747833 3'AG 124747833 Downstream 37bp
chr11 124747869 124747869 1 + G A BLCA 124747883 + 124747863 124747903 41 CGGCCAGGGGCACGGCCGCCCCTGGCGAGGGTCCTGTCTAT CGGCCAAGGGCACGGCCGCCCCTGGCGAGGGTCCTGTCTAT < 41bp 1 0.244604259506473 1 0.382664203643799 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747883 chr11:124747869 nonsynonymous SNV 0.131 0 7 hm5C_associated_SNPs_16652 0 0 0 0 1 ROBO3 chr11:124747833 3'AG 124747833 Downstream 37bp
chr11 124747869 124747869 1 + G A BLCA 124747884 + 124747864 124747904 41 GGCCAGGGGCACGGCCGCCCCTGGCGAGGGTCCTGTCTATA GGCCAAGGGCACGGCCGCCCCTGGCGAGGGTCCTGTCTATA < 41bp 1 0.61137296205925 1 0.15770024061203 experiment 0.7772540758815 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747884 chr11:124747869 nonsynonymous SNV 0.131 0 6 hm5C_associated_SNPs_16653 0 0 0 0 1 ROBO3 chr11:124747833 3'AG 124747833 Downstream 37bp
chr16 57241994 57241994 1 + G A BLCA 57241985 + 57241965 57242005 41 TCCAGTGATCAGGAACCTCCCTATTCAATGATAACATTACA TCCAGTGATCAGGAACCTCCCTATTCAATAATAACATTACA < 41bp 1 0.09792840275736 1 0.0977031588554382 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57241985 chr16:57241994 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_16654 0 0 1 0 2 RSPRY1 chr16:57241970 3'AG 57241970 Downstream 25bp
chr16 57241994 57241994 1 + G A BLCA 57241985 + 57241965 57242005 41 TCCAGTGATCAGGAACCTCCCTATTCAATGATAACATTACA TCCAGTGATCAGGAACCTCCCTATTCAATAATAACATTACA < 41bp 1 0.09792840275736 1 0.0977031588554382 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57241985 chr16:57241994 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_16654 0 0 1 0 2 RSPRY1 chr16:57242022 5'GT 57242022 Upstream 29bp
chr16 22237249 22237249 1 + G A BLCA 22237252 + 22237232 22237272 41 GCAACCTAACAAAAAGTGAGCGGTATAGCTCCAGCGGGTCC GCAACCTAACAAAAAGTAAGCGGTATAGCTCCAGCGGGTCC < 41bp 1 0.512857713277486 1 0.724124491214752 experiment 0.974284573445029 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EEF2K ENSG00000103319 CDS Human protein_coding chr16:22237252 chr16:22237249 nonsynonymous SNV 0.076 0 18 hm5C_associated_SNPs_16655 0 0 0 0 1 EEF2K chr16:22237296 5'GT 22237296 Upstream 48bp
chr9 131356542 131356542 1 + G T BLCA 131356537 + 131356517 131356557 41 GTTTATGTTGTTCCGTGAAGCGAATGAACTACAGCAATGGA GTTTATGTTGTTCCGTGAAGCGAATTAACTACAGCAATGGA < 41bp 1 0.104994390135335 1 0.284831881523132 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131356537 chr9:131356542 stopgain 0.312 1 26 hm5C_associated_SNPs_16658 0 0 1 0 1 SPTAN1 chr9:131356454 3'AG 131356454 Downstream 89bp
chr3 12571305 12571305 1 + C G BLCA 12571319 + 12571299 12571339 41 AAGGCTCTCTCCGCAGGCCTCTCAGTTGGAAGTCCCTGGCT AAGGCTGTCTCCGCAGGCCTCTCAGTTGGAAGTCCCTGGCT < 41bp 1 0.72861537556731 1 0.839203476905823 experiment 0.542769248865381 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12571319 chr3:12571305 nonsynonymous SNV 0.994 0 7 hm5C_associated_SNPs_16659 0 0 1 0 2 TSEN2 chr3:12571261 3'AG 12571261 Downstream 45bp
chr3 12571305 12571305 1 + C G BLCA 12571319 + 12571299 12571339 41 AAGGCTCTCTCCGCAGGCCTCTCAGTTGGAAGTCCCTGGCT AAGGCTGTCTCCGCAGGCCTCTCAGTTGGAAGTCCCTGGCT < 41bp 1 0.72861537556731 1 0.839203476905823 experiment 0.542769248865381 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12571319 chr3:12571305 nonsynonymous SNV 0.994 0 7 hm5C_associated_SNPs_16659 0 0 1 0 2 TSEN2 chr3:12571372 5'GT 12571372 Upstream 68bp
chr6 43173955 43173955 1 + G A BLCA 43173959 + 43173939 43173979 41 AAGATGAGGAGGAAAAGAGACTAGAGGAAGAGGAGGTAAGA AAGATGAGGAGGAAAAAAGACTAGAGGAAGAGGAGGTAAGA < 41bp 1 0.594905606977192 1 0.477222234010696 experiment 0.810188786045617 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CUL9 ENSG00000112659 CDS Human protein_coding chr6:43173959 chr6:43173955 synonymous SNV . 0 17 hm5C_associated_SNPs_16660 0 0 0 0 1 CUL9 chr6:43173973 5'GT 43173973 Upstream 19bp
chr6 36569547 36569547 1 + C G BLCA 36569553 + 36569533 36569573 41 AAATCACAAGCCGTCCCGATCCTTCTCTAGGTCTCGTAGGT AAATCACAAGCCGTGCCGATCCTTCTCTAGGTCTCGTAGGT < 41bp 1 0.0240079798589889 1 0.039482057094574 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36569553 chr6:36569547 nonsynonymous SNV 0.998 3 15 hm5C_associated_SNPs_16661 0 0 1 0 2 SRSF3 chr6:36569485 3'AG 36569485 Downstream 63bp
chr6 36569547 36569547 1 + C G BLCA 36569553 + 36569533 36569573 41 AAATCACAAGCCGTCCCGATCCTTCTCTAGGTCTCGTAGGT AAATCACAAGCCGTGCCGATCCTTCTCTAGGTCTCGTAGGT < 41bp 1 0.0240079798589889 1 0.039482057094574 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36569553 chr6:36569547 nonsynonymous SNV 0.998 3 15 hm5C_associated_SNPs_16661 0 0 1 0 2 SRSF3 chr6:36569571 5'GT 36569571 Upstream 25bp
chr17 28961033 28961033 1 + T G BLCA 28961053 + 28961033 28961073 41 TATGACTATAAGAACAAACTCATCTTCGCAATATCTGTGAC GATGACTATAAGAACAAACTCATCTTCGCAATATCTGTGAC < 41bp 1 0.0732580662931991 1 0.0998230576515198 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC107133515 ENSG00000214719;ENSG00000250462 ncRNA_exonic Human other chr17:28961053 chr17:28961033 . . 0 1 hm5C_associated_SNPs_16663 0 0 1 0 1 LOC107133515 chr17:28961012 3'AG 28961012 Downstream 22bp
chr4 74308023 74308023 1 + G A BLCA 74308041 + 74308021 74308061 41 ATGAGATAGCAAGAAGGCATCCCTTCCTGTATGCACCTACA ATAAGATAGCAAGAAGGCATCCCTTCCTGTATGCACCTACA < 41bp 1 0.066877108953201 1 0.0767460763454437 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AFP ENSG00000081051 CDS Human protein_coding chr4:74308041 chr4:74308023 nonsynonymous SNV 0.325 3 3 hm5C_associated_SNPs_16668 0 0 1 0 1 AFP chr4:74308013 3'AG 74308013 Downstream 11bp
chr19 11553282 11553282 1 + G C BLCA 11553280 + 11553260 11553300 41 GCGGACAGTGAAGGAGGAAGCTGAGAAGCCAGAGAGAGAGG GCGGACAGTGAAGGAGGAAGCTCAGAAGCCAGAGAGAGAGG < 41bp 1 0.670252940620183 1 0.338702499866486 experiment 0.659494118759635 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553280 chr19:11553282 nonsynonymous SNV 0.906 3 23 hm5C_associated_SNPs_16669 0 0 1 0 2 PRKCSH chr19:11553201 3'AG 11553201 Downstream 82bp
chr19 11553282 11553282 1 + G C BLCA 11553280 + 11553260 11553300 41 GCGGACAGTGAAGGAGGAAGCTGAGAAGCCAGAGAGAGAGG GCGGACAGTGAAGGAGGAAGCTCAGAAGCCAGAGAGAGAGG < 41bp 1 0.670252940620183 1 0.338702499866486 experiment 0.659494118759635 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553280 chr19:11553282 nonsynonymous SNV 0.906 3 23 hm5C_associated_SNPs_16669 0 0 1 0 2 PRKCSH chr19:11553330 5'GT 11553330 Upstream 49bp
chr19 11553282 11553282 1 + G C BLCA 11553288 + 11553268 11553308 41 TGAAGGAGGAAGCTGAGAAGCCAGAGAGAGAGGCCAAAGAG TGAAGGAGGAAGCTCAGAAGCCAGAGAGAGAGGCCAAAGAG < 41bp 1 0.77726665306709 1 0.265318870544434 experiment 0.445466693865821 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553288 chr19:11553282 nonsynonymous SNV 0.906 3 15 hm5C_associated_SNPs_16670 0 0 1 0 2 PRKCSH chr19:11553201 3'AG 11553201 Downstream 82bp
chr19 11553282 11553282 1 + G C BLCA 11553288 + 11553268 11553308 41 TGAAGGAGGAAGCTGAGAAGCCAGAGAGAGAGGCCAAAGAG TGAAGGAGGAAGCTCAGAAGCCAGAGAGAGAGGCCAAAGAG < 41bp 1 0.77726665306709 1 0.265318870544434 experiment 0.445466693865821 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553288 chr19:11553282 nonsynonymous SNV 0.906 3 15 hm5C_associated_SNPs_16670 0 0 1 0 2 PRKCSH chr19:11553330 5'GT 11553330 Upstream 49bp
chr19 11553282 11553282 1 + G C BLCA 11553289 + 11553269 11553309 41 GAAGGAGGAAGCTGAGAAGCCAGAGAGAGAGGCCAAAGAGC GAAGGAGGAAGCTCAGAAGCCAGAGAGAGAGGCCAAAGAGC < 41bp 1 0.60575463744939 1 0.729320526123047 experiment 0.78849072510122 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553289 chr19:11553282 nonsynonymous SNV 0.906 3 14 hm5C_associated_SNPs_16671 0 0 1 0 2 PRKCSH chr19:11553201 3'AG 11553201 Downstream 82bp
chr19 11553282 11553282 1 + G C BLCA 11553289 + 11553269 11553309 41 GAAGGAGGAAGCTGAGAAGCCAGAGAGAGAGGCCAAAGAGC GAAGGAGGAAGCTCAGAAGCCAGAGAGAGAGGCCAAAGAGC < 41bp 1 0.60575463744939 1 0.729320526123047 experiment 0.78849072510122 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553289 chr19:11553282 nonsynonymous SNV 0.906 3 14 hm5C_associated_SNPs_16671 0 0 1 0 2 PRKCSH chr19:11553330 5'GT 11553330 Upstream 49bp
chr19 11553282 11553282 1 + G C BLCA 11553302 + 11553282 11553322 41 GAGAAGCCAGAGAGAGAGGCCAAAGAGCAGCACCAGAAGCT CAGAAGCCAGAGAGAGAGGCCAAAGAGCAGCACCAGAAGCT < 41bp 1 0.310835704825387 1 0.518966674804688 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553302 chr19:11553282 nonsynonymous SNV 0.906 3 1 hm5C_associated_SNPs_16672 0 0 1 0 2 PRKCSH chr19:11553201 3'AG 11553201 Downstream 82bp
chr19 11553282 11553282 1 + G C BLCA 11553302 + 11553282 11553322 41 GAGAAGCCAGAGAGAGAGGCCAAAGAGCAGCACCAGAAGCT CAGAAGCCAGAGAGAGAGGCCAAAGAGCAGCACCAGAAGCT < 41bp 1 0.310835704825387 1 0.518966674804688 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553302 chr19:11553282 nonsynonymous SNV 0.906 3 1 hm5C_associated_SNPs_16672 0 0 1 0 2 PRKCSH chr19:11553330 5'GT 11553330 Upstream 49bp
chr7 101821761 101821761 1 + G A BLCA 101821775 + 101821755 101821795 41 GCCATAGAGGTGCTGACCCGCTCCAGCCTAGAAGTTGAGTT GCCATAAAGGTGCTGACCCGCTCCAGCCTAGAAGTTGAGTT < 41bp 1 0.51366993424361 1 0.851739645004272 experiment 0.97266013151278 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101821775 chr7:101821761 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_16676 0 0 1 0 2 CUX1 chr7:101821749 3'AG 101821749 Downstream 13bp
chr7 101821761 101821761 1 + G A BLCA 101821775 + 101821755 101821795 41 GCCATAGAGGTGCTGACCCGCTCCAGCCTAGAAGTTGAGTT GCCATAAAGGTGCTGACCCGCTCCAGCCTAGAAGTTGAGTT < 41bp 1 0.51366993424361 1 0.851739645004272 experiment 0.97266013151278 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101821775 chr7:101821761 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_16676 0 0 1 0 2 CUX1 chr7:101821755 3'AG 101821755 Downstream 7bp
chr2 128185988 128185988 1 + G A BLCA 128185991 + 128185971 128186011 41 GACCTGGACATCAAGGAGGTCTTCGTCCACCCCAACTACAG GACCTGGACATCAAGGAAGTCTTCGTCCACCCCAACTACAG < 41bp 1 0.341135861730551 1 0.0571824312210083 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128185991 chr2:128185988 synonymous SNV . 0 18 hm5C_associated_SNPs_16677 0 0 0 0 1 PROC chr2:128185933 3'AG 128185933 Downstream 56bp
chr3 9976525 9976525 1 + G C BLCA 9976545 + 9976525 9976565 41 GAGAGAACCATCCGGGACAACTTTGGAGGTGGAAACACTGC CAGAGAACCATCCGGGACAACTTTGGAGGTGGAAACACTGC < 41bp 1 0.096015763027671 1 0.105728387832642 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976545 chr3:9976525 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_16679 0 0 1 0 2 CRELD1 chr3:9976519 3'AG 9976519 Downstream 7bp
chr3 9976525 9976525 1 + G C BLCA 9976545 + 9976525 9976565 41 GAGAGAACCATCCGGGACAACTTTGGAGGTGGAAACACTGC CAGAGAACCATCCGGGACAACTTTGGAGGTGGAAACACTGC < 41bp 1 0.096015763027671 1 0.105728387832642 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976545 chr3:9976525 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_16679 0 0 1 0 2 CRELD1 chr3:9976601 5'GT 9976601 Upstream 77bp
chr1 242052811 242052811 1 + T G BLCA 242052812 + 242052792 242052832 41 AAGAAACCCCTGTCCCCAGTCAGAGATAACATCCAACTAAC AAGAAACCCCTGTCCCCAGGCAGAGATAACATCCAACTAAC < 41bp 1 0.593572513612806 1 0.810050308704376 experiment 0.812854972774389 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EXO1 ENSG00000174371 CDS Human other chr1:242052812 chr1:242052811 nonsynonymous SNV 0.996 3 20 hm5C_associated_SNPs_16680 0 0 1 1 2 EXO1;EXO1 chr1:242052767 3'AG 242052767 Downstream 45bp
chr1 242052811 242052811 1 + T G BLCA 242052812 + 242052792 242052832 41 AAGAAACCCCTGTCCCCAGTCAGAGATAACATCCAACTAAC AAGAAACCCCTGTCCCCAGGCAGAGATAACATCCAACTAAC < 41bp 1 0.593572513612806 1 0.810050308704376 experiment 0.812854972774389 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EXO1 ENSG00000174371 CDS Human protein_coding chr1:242052812 chr1:242052811 nonsynonymous SNV 0.996 3 20 hm5C_associated_SNPs_16680 0 0 1 1 2 EXO1 chr1:242052769 3'AG 242052769 Downstream 43bp
chr14 100380990 100380990 1 + T C BLCA 100380989 + 100380969 100381009 41 CATGACAAGCATGCCACTCTCTGGGACGCTGTGGGTCACCG CATGACAAGCATGCCACTCTCCGGGACGCTGTGGGTCACCG < 41bp 1 0.704104526428117 1 0.92273223400116 experiment 0.591790947143766 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EML1 ENSG00000066629 CDS Human protein_coding chr14:100380989 chr14:100380990 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_16681 0 0 0 0 1 EML1 chr14:100381034 5'GT 100381034 Upstream 45bp
chr11 130005576 130005576 1 + C T BLCA 130005561 + 130005541 130005581 41 TCTGAGGAGAGTGAGGAGATCCCACCGTTCCACCCCTTCCA TCTGAGGAGAGTGAGGAGATCCCACCGTTCCACCCTTTCCA < 41bp 1 0.235934429163218 1 0.0572077333927155 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130005561 chr11:130005576 synonymous SNV . 0 36 hm5C_associated_SNPs_16682 0 0 1 0 1 APLP2 chr11:130005610 5'GT 130005610 Upstream 35bp
chr6 21198321 21198321 1 + C G BLCA 21198317 + 21198297 21198337 41 TCCAAGTTTTATGTTGCACACAATCAATTCTATGAGCAGGT TCCAAGTTTTATGTTGCACACAATGAATTCTATGAGCAGGT < 41bp 1 0.104873206402919 1 0.104843527078629 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDKAL1 ENSG00000145996 CDS Human protein_coding chr6:21198317 chr6:21198321 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_16683 0 0 0 0 2 CDKAL1 chr6:21198252 3'AG 21198252 Downstream 70bp
chr6 21198321 21198321 1 + C G BLCA 21198317 + 21198297 21198337 41 TCCAAGTTTTATGTTGCACACAATCAATTCTATGAGCAGGT TCCAAGTTTTATGTTGCACACAATGAATTCTATGAGCAGGT < 41bp 1 0.104873206402919 1 0.104843527078629 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDKAL1 ENSG00000145996 CDS Human protein_coding chr6:21198317 chr6:21198321 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_16683 0 0 0 0 2 CDKAL1 chr6:21198335 5'GT 21198335 Upstream 15bp
chr6 30887966 30887966 1 + G T BLCA 30887972 + 30887952 30887992 41 GAGGATGGGACCATGACCTCCCTCTGCGGGGACTGGCTGCA GAGGATGGGACCATTACCTCCCTCTGCGGGGACTGGCTGCA < 41bp 1 0.114263954923039 1 0.281872510910034 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VARS2 ENSG00000137411 CDS Human protein_coding chr6:30887972 chr6:30887966 nonsynonymous SNV 0.994 1 15 hm5C_associated_SNPs_16684 0 0 1 0 2 VARS2 chr6:30887872 3'AG 30887872 Downstream 95bp
chr6 30887966 30887966 1 + G T BLCA 30887972 + 30887952 30887992 41 GAGGATGGGACCATGACCTCCCTCTGCGGGGACTGGCTGCA GAGGATGGGACCATTACCTCCCTCTGCGGGGACTGGCTGCA < 41bp 1 0.114263954923039 1 0.281872510910034 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VARS2 ENSG00000137411 CDS Human protein_coding chr6:30887972 chr6:30887966 nonsynonymous SNV 0.994 1 15 hm5C_associated_SNPs_16684 0 0 1 0 2 VARS2 chr6:30887993 5'GT 30887993 Upstream 28bp
chr19 40882643 40882643 1 + G T BLCA 40882624 + 40882604 40882644 41 TCGGAGCCATCCATGCGGGCCTTCCTGCTCTCTCTGGCTGC TCGGAGCCATCCATGCGGGCCTTCCTGCTCTCTCTGGCTTC < 41bp 1 0.0967530052297918 1 0.017210066318512 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40882624 chr19:40882643 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_16685 0 0 1 0 1 PLD3 chr19:40882681 5'GT 40882681 Upstream 39bp
chr1 226253422 226253422 1 + A C BLCA 226253428 + 226253408 226253448 41 ACTTCTGATTCGCAAACTTCCCTTCCAGCGTCTGGTGCGAG ACTTCTGATTCGCACACTTCCCTTCCAGCGTCTGGTGCGAG < 41bp 1 0.0465830947279239 1 0.0614855885505676 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control H3F3A ENSG00000163041 CDS Human protein_coding chr1:226253428 chr1:226253422 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_16687 0 0 0 0 2 H3F3A chr1:226253357 3'AG 226253357 Downstream 66bp
chr1 226253422 226253422 1 + A C BLCA 226253428 + 226253408 226253448 41 ACTTCTGATTCGCAAACTTCCCTTCCAGCGTCTGGTGCGAG ACTTCTGATTCGCACACTTCCCTTCCAGCGTCTGGTGCGAG < 41bp 1 0.0465830947279239 1 0.0614855885505676 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control H3F3A ENSG00000163041 CDS Human protein_coding chr1:226253428 chr1:226253422 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_16687 0 0 0 0 2 H3F3A chr1:226253510 5'GT 226253510 Upstream 89bp
chr3 38022299 38022299 1 + G C BLCA 38022310 + 38022290 38022330 41 CCCTTCTTTGAGGGCCTGAGCCGGGAGGACGACGTGTACAG CCCTTCTTTCAGGGCCTGAGCCGGGAGGACGACGTGTACAG < 41bp 1 0.74376426125696 1 0.707260489463806 experiment 0.512471477486079 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CTDSPL ENSG00000144677 CDS Human protein_coding chr3:38022310 chr3:38022299 nonsynonymous SNV 0.999 4 10 hm5C_associated_SNPs_16688 0 0 1 0 1 CTDSPL chr3:38022233 3'AG 38022233 Downstream 67bp
chr11 125482969 125482969 1 + C G BLCA 125482974 + 125482954 125482994 41 CCAGTGAGGCCTACTCTTCTCCGTCCATTGTACTATCTGCC CCAGTGAGGCCTACTGTTCTCCGTCCATTGTACTATCTGCC < 41bp 1 0.0994828633436378 1 0.612975895404816 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STT3A ENSG00000134910 CDS Human protein_coding chr11:125482974 chr11:125482969 nonsynonymous SNV 0.997 4 16 hm5C_associated_SNPs_16689 0 0 1 0 1 STT3A chr11:125482884 3'AG 125482884 Downstream 86bp
chr14 50247423 50247423 1 + G T BLCA 50247443 + 50247423 50247463 41 GATGCCTGGACTTACTGCATCAGTAAAAATGAATGGATACA TATGCCTGGACTTACTGCATCAGTAAAAATGAATGGATACA < 41bp 1 0.274383268061984 1 0.303805619478226 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLHDC2 ENSG00000165516 CDS Human protein_coding chr14:50247443 chr14:50247423 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_16690 0 0 1 0 2 KLHDC2 chr14:50247421 3'AG 50247421 Downstream 3bp
chr14 50247423 50247423 1 + G T BLCA 50247443 + 50247423 50247463 41 GATGCCTGGACTTACTGCATCAGTAAAAATGAATGGATACA TATGCCTGGACTTACTGCATCAGTAAAAATGAATGGATACA < 41bp 1 0.274383268061984 1 0.303805619478226 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLHDC2 ENSG00000165516 CDS Human protein_coding chr14:50247443 chr14:50247423 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_16690 0 0 1 0 2 KLHDC2 chr14:50247493 5'GT 50247493 Upstream 71bp
chr17 80529635 80529635 1 + G C BLCA 80529633 + 80529613 80529653 41 CGCCTTACTCCTACGCGCAGCTGATAGTTCAGGCGATTACG CGCCTTACTCCTACGCGCAGCTCATAGTTCAGGCGATTACG < 41bp 1 0.0696033506982409 1 0.0411477088928223 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80529633 chr17:80529635 synonymous SNV . 0 23 hm5C_associated_SNPs_16691 0 0 1 0 1 FOXK2 chr17:80529600 3'AG 80529600 Downstream 36bp
chr16 89977038 89977038 1 + C T BLCA 89977054 + 89977034 89977074 41 TCTTCTTCCGGTCACTGTTGCCAAACTATACCATGGAGGTA TCTTTTTCCGGTCACTGTTGCCAAACTATACCATGGAGGTA < 41bp 1 0.273061838884944 1 0.180702328681946 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89977054 chr16:89977038 nonsynonymous SNV 0.406 1 5 hm5C_associated_SNPs_16692 0 0 1 0 2 TCF25 chr16:89976999 3'AG 89976999 Downstream 40bp
chr16 89977038 89977038 1 + C T BLCA 89977054 + 89977034 89977074 41 TCTTCTTCCGGTCACTGTTGCCAAACTATACCATGGAGGTA TCTTTTTCCGGTCACTGTTGCCAAACTATACCATGGAGGTA < 41bp 1 0.273061838884944 1 0.180702328681946 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89977054 chr16:89977038 nonsynonymous SNV 0.406 1 5 hm5C_associated_SNPs_16692 0 0 1 0 2 TCF25 chr16:89977071 5'GT 89977071 Upstream 34bp
chrX 70517696 70517696 1 + G C BLCA 70517707 + 70517687 70517727 41 CAGGAGGAAGAGCGCAGGCGCCGTGAAGAAGAGATGCGGCG CAGGAGGAACAGCGCAGGCGCCGTGAAGAAGAGATGCGGCG < 41bp 1 0.208057384706711 1 0.347572326660156 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517707 chrX:70517696 nonsynonymous SNV 0.999 3 10 hm5C_associated_SNPs_16693 0 0 1 0 2 NONO chrX:70517686 3'AG 70517686 Downstream 11bp
chrX 70517696 70517696 1 + G C BLCA 70517707 + 70517687 70517727 41 CAGGAGGAAGAGCGCAGGCGCCGTGAAGAAGAGATGCGGCG CAGGAGGAACAGCGCAGGCGCCGTGAAGAAGAGATGCGGCG < 41bp 1 0.208057384706711 1 0.347572326660156 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517707 chrX:70517696 nonsynonymous SNV 0.999 3 10 hm5C_associated_SNPs_16693 0 0 1 0 2 NONO chrX:70517788 5'GT 70517788 Upstream 93bp
chr22 40697304 40697304 1 + C G BLCA 40697295 + 40697275 40697315 41 ACGCATTGAATGTGGGGCTCCCAGACCTTCAAACCAAAGGG ACGCATTGAATGTGGGGCTCCCAGACCTTGAAACCAAAGGG < 41bp 1 0.179650241876741 1 0.461465418338776 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40697295 chr22:40697304 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_16694 0 0 1 0 1 TNRC6B chr22:40697337 5'GT 40697337 Upstream 34bp
chr7 21934407 21934407 1 + T C BLCA 21934397 + 21934377 21934417 41 TTCGGGAAATACGTATATCACTTGAACAACTGGACCTTAGT TTCGGGAAATACGTATATCACTTGAACAACCGGACCTTAGT < 41bp 1 0.254743769896056 1 0.479752063751221 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21934397 chr7:21934407 nonsynonymous SNV 0.905 4 31 hm5C_associated_SNPs_16695 0 0 1 0 1 DNAH11 chr7:21934423 5'GT 21934423 Upstream 17bp
chrX 70517719 70517719 1 + G A BLCA 70517707 + 70517687 70517727 41 CAGGAGGAAGAGCGCAGGCGCCGTGAAGAAGAGATGCGGCG CAGGAGGAAGAGCGCAGGCGCCGTGAAGAAGAAATGCGGCG < 41bp 1 0.221976992047122 1 0.470190018415451 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517707 chrX:70517719 synonymous SNV . 0 33 hm5C_associated_SNPs_16696 0 0 1 0 2 NONO chrX:70517686 3'AG 70517686 Downstream 34bp
chrX 70517719 70517719 1 + G A BLCA 70517707 + 70517687 70517727 41 CAGGAGGAAGAGCGCAGGCGCCGTGAAGAAGAGATGCGGCG CAGGAGGAAGAGCGCAGGCGCCGTGAAGAAGAAATGCGGCG < 41bp 1 0.221976992047122 1 0.470190018415451 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517707 chrX:70517719 synonymous SNV . 0 33 hm5C_associated_SNPs_16696 0 0 1 0 2 NONO chrX:70517788 5'GT 70517788 Upstream 70bp
chr17 61907789 61907789 1 + G C BLCA 61907774 + 61907754 61907794 41 GAGATGATTGGTGGACTGGACAAACAGATCAAGGAGATCAA GAGATGATTGGTGGACTGGACAAACAGATCAAGGACATCAA < 41bp 1 0.265355139205506 1 0.419875860214233 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61907774 chr17:61907789 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_16697 0 0 1 0 1 PSMC5 chr17:61907861 5'GT 61907861 Upstream 73bp
chr17 61907789 61907789 1 + G C BLCA 61907778 + 61907758 61907798 41 TGATTGGTGGACTGGACAAACAGATCAAGGAGATCAAAGAA TGATTGGTGGACTGGACAAACAGATCAAGGACATCAAAGAA < 41bp 1 0.574539482584378 1 0.476048141717911 experiment 0.850921034831244 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61907778 chr17:61907789 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_16698 0 0 1 0 1 PSMC5 chr17:61907861 5'GT 61907861 Upstream 73bp
chr10 116603614 116603614 1 + G C BLCA 116603627 + 116603607 116603647 41 ACTGACAGACAGACTTGCCTCCCTGTACAAGGCCCTACCTC ACTGACACACAGACTTGCCTCCCTGTACAAGGCCCTACCTC < 41bp 1 0.375043649998485 1 0.443759143352509 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM160B1 ENSG00000151553 CDS Human protein_coding chr10:116603627 chr10:116603614 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_16699 0 0 1 0 1 FAM160B1 chr10:116603696 5'GT 116603696 Upstream 83bp
chr19 45535844 45535844 1 + C T BLCA 45535862 + 45535842 45535882 41 TTCTCCCAGGCCGACGTGCACCGCCAGATTGCCATTGTGTT TTTTCCCAGGCCGACGTGCACCGCCAGATTGCCATTGTGTT < 41bp 1 0.108592480133668 1 0.126727908849716 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RELB ENSG00000104856 CDS Human protein_coding chr19:45535862 chr19:45535844 synonymous SNV . 0 3 hm5C_associated_SNPs_16703 0 0 1 0 1 RELB chr19:45535792 3'AG 45535792 Downstream 53bp
chr5 112901666 112901666 1 + A G BLCA 112901679 + 112901659 112901699 41 ACTATGGAAATAATCATAGGCATGAGAACACAGTTGCTTGG ACTATGGGAATAATCATAGGCATGAGAACACAGTTGCTTGG < 41bp 1 0.57234983515857 1 0.492031872272491 experiment 0.855300329682859 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112901679 chr5:112901666 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_16704 0 0 1 0 2 YTHDC2 chr5:112901590 3'AG 112901590 Downstream 77bp
chr5 112901666 112901666 1 + A G BLCA 112901679 + 112901659 112901699 41 ACTATGGAAATAATCATAGGCATGAGAACACAGTTGCTTGG ACTATGGGAATAATCATAGGCATGAGAACACAGTTGCTTGG < 41bp 1 0.57234983515857 1 0.492031872272491 experiment 0.855300329682859 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112901679 chr5:112901666 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_16704 0 0 1 0 2 YTHDC2 chr5:112901716 5'GT 112901716 Upstream 51bp
chr6 87865442 87865442 1 + G T BLCA 87865437 + 87865417 87865457 41 GCGGGAGAGCCGGGTACCGGCCGTGGAAGCGGCCACCGACT GCGGGAGAGCCGGGTACCGGCCGTGTAAGCGGCCACCGACT < 41bp 1 0.419716795302305 1 0.246264725923538 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF292 ENSG00000188994 CDS Human protein_coding chr6:87865437 chr6:87865442 stopgain 0.785 1 26 hm5C_associated_SNPs_16705 0 0 1 0 1 ZNF292 chr6:87865477 5'GT 87865477 Upstream 36bp
chr2 101622476 101622476 1 + G A BLCA 101622461 + 101622441 101622481 41 GTGTGCGGCTGTCCAGAAAACGTAATGAGGATGAAGATTCA GTGTGCGGCTGTCCAGAAAACGTAATGAGGATGAAAATTCA < 41bp 1 0.702033859045271 1 0.416465818881989 experiment 0.595932281909457 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622461 chr2:101622476 nonsynonymous SNV 1.000 0 36 hm5C_associated_SNPs_16706 0 0 1 0 2 RPL31 chr2:101622421 3'AG 101622421 Downstream 56bp
chr2 101622476 101622476 1 + G A BLCA 101622461 + 101622441 101622481 41 GTGTGCGGCTGTCCAGAAAACGTAATGAGGATGAAGATTCA GTGTGCGGCTGTCCAGAAAACGTAATGAGGATGAAAATTCA < 41bp 1 0.702033859045271 1 0.416465818881989 experiment 0.595932281909457 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622461 chr2:101622476 nonsynonymous SNV 1.000 0 36 hm5C_associated_SNPs_16706 0 0 1 0 2 RPL31 chr2:101622533 5'GT 101622533 Upstream 58bp
chr2 101622467 101622467 1 + G A BLCA 101622449 + 101622429 101622469 41 CATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAG CATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATAAG < 41bp 1 0.175049092229626 1 0.397925406694412 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622449 chr2:101622467 nonsynonymous SNV 0.997 0 39 hm5C_associated_SNPs_16712 0 0 1 0 2 RPL31 chr2:101622421 3'AG 101622421 Downstream 47bp
chr2 101622467 101622467 1 + G A BLCA 101622449 + 101622429 101622469 41 CATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAG CATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATAAG < 41bp 1 0.175049092229626 1 0.397925406694412 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622449 chr2:101622467 nonsynonymous SNV 0.997 0 39 hm5C_associated_SNPs_16712 0 0 1 0 2 RPL31 chr2:101622533 5'GT 101622533 Upstream 67bp
chr2 101622467 101622467 1 + G A BLCA 101622453 + 101622433 101622473 41 CCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGGATG CCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATAAGGATG < 41bp 1 0.714297567077911 1 0.7532958984375 experiment 0.571404865844179 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622453 chr2:101622467 nonsynonymous SNV 0.997 0 35 hm5C_associated_SNPs_16713 0 0 1 0 2 RPL31 chr2:101622421 3'AG 101622421 Downstream 47bp
chr2 101622467 101622467 1 + G A BLCA 101622453 + 101622433 101622473 41 CCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGGATG CCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATAAGGATG < 41bp 1 0.714297567077911 1 0.7532958984375 experiment 0.571404865844179 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622453 chr2:101622467 nonsynonymous SNV 0.997 0 35 hm5C_associated_SNPs_16713 0 0 1 0 2 RPL31 chr2:101622533 5'GT 101622533 Upstream 67bp
chr2 101622467 101622467 1 + G A BLCA 101622461 + 101622441 101622481 41 GTGTGCGGCTGTCCAGAAAACGTAATGAGGATGAAGATTCA GTGTGCGGCTGTCCAGAAAACGTAATAAGGATGAAGATTCA < 41bp 1 0.710801332474947 1 0.435490131378174 experiment 0.578397335050105 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622461 chr2:101622467 nonsynonymous SNV 0.997 0 27 hm5C_associated_SNPs_16714 0 0 1 0 2 RPL31 chr2:101622421 3'AG 101622421 Downstream 47bp
chr2 101622467 101622467 1 + G A BLCA 101622461 + 101622441 101622481 41 GTGTGCGGCTGTCCAGAAAACGTAATGAGGATGAAGATTCA GTGTGCGGCTGTCCAGAAAACGTAATAAGGATGAAGATTCA < 41bp 1 0.710801332474947 1 0.435490131378174 experiment 0.578397335050105 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622461 chr2:101622467 nonsynonymous SNV 0.997 0 27 hm5C_associated_SNPs_16714 0 0 1 0 2 RPL31 chr2:101622533 5'GT 101622533 Upstream 67bp
chr2 101622473 101622473 1 + G A BLCA 101622453 + 101622433 101622473 41 CCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGGATG CCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGGATA < 41bp 1 0.73997160517753 1 0.621378183364868 experiment 0.520056789644941 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622453 chr2:101622473 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_16715 0 0 1 0 2 RPL31 chr2:101622421 3'AG 101622421 Downstream 53bp
chr2 101622473 101622473 1 + G A BLCA 101622453 + 101622433 101622473 41 CCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGGATG CCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGGATA < 41bp 1 0.73997160517753 1 0.621378183364868 experiment 0.520056789644941 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622453 chr2:101622473 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_16715 0 0 1 0 2 RPL31 chr2:101622533 5'GT 101622533 Upstream 61bp
chr2 101622473 101622473 1 + G A BLCA 101622461 + 101622441 101622481 41 GTGTGCGGCTGTCCAGAAAACGTAATGAGGATGAAGATTCA GTGTGCGGCTGTCCAGAAAACGTAATGAGGATAAAGATTCA < 41bp 1 0.703928551859993 1 0.503063499927521 experiment 0.592142896280013 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622461 chr2:101622473 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_16716 0 0 1 0 2 RPL31 chr2:101622421 3'AG 101622421 Downstream 53bp
chr2 101622473 101622473 1 + G A BLCA 101622461 + 101622441 101622481 41 GTGTGCGGCTGTCCAGAAAACGTAATGAGGATGAAGATTCA GTGTGCGGCTGTCCAGAAAACGTAATGAGGATAAAGATTCA < 41bp 1 0.703928551859993 1 0.503063499927521 experiment 0.592142896280013 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622461 chr2:101622473 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_16716 0 0 1 0 2 RPL31 chr2:101622533 5'GT 101622533 Upstream 61bp
chr6 26446154 26446154 1 + C T BLCA 26446158 + 26446138 26446178 41 TCTGGTGGGGGTGTATCCTGCATCATCAGAAATTCCCTCCT TCTGGTGGGGGTGTATTCTGCATCATCAGAAATTCCCTCCT < 41bp 1 0.736268373275577 1 0.301624625921249 experiment 0.527463253448846 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BTN3A3 ENSG00000111801 CDS Human protein_coding chr6:26446158 chr6:26446154 nonsynonymous SNV 0.014 2 17 hm5C_associated_SNPs_16717 0 0 0 0 1 BTN3A3 chr6:26446213 5'GT 26446213 Upstream 60bp
chr18 44626625 44626625 1 + G A BLCA 44626629 + 44626609 44626649 41 TTTTTGGCTGTTTCAGGAGACTGAGGGCTACTCAGGCTCAG TTTTTGGCTGTTTCAGAAGACTGAGGGCTACTCAGGCTCAG < 41bp 1 0.765734520734817 1 0.477204978466034 experiment 0.468530958530365 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control KATNAL2 ENSG00000167216 CDS Human protein_coding chr18:44626629 chr18:44626625 nonsynonymous SNV 0.929 2 17 hm5C_associated_SNPs_16718 0 0 0 0 1 KATNAL2 chr18:44626625 3'AG 44626625 Downstream 1bp
chr12 56536448 56536448 1 + C T BLCA 56536459 + 56536439 56536479 41 ACCAGAGCTCTCGGGGGGACCCCCTCACATCACCTCCTCAG ACCAGAGCTTTCGGGGGGACCCCCTCACATCACCTCCTCAG < 41bp 1 0.258114267651328 1 0.106501370668411 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56536459 chr12:56536448 synonymous SNV . 0 10 hm5C_associated_SNPs_16719 0 0 1 0 2 ESYT1 chr12:56536362 3'AG 56536362 Downstream 87bp
chr12 56536448 56536448 1 + C T BLCA 56536459 + 56536439 56536479 41 ACCAGAGCTCTCGGGGGGACCCCCTCACATCACCTCCTCAG ACCAGAGCTTTCGGGGGGACCCCCTCACATCACCTCCTCAG < 41bp 1 0.258114267651328 1 0.106501370668411 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56536459 chr12:56536448 synonymous SNV . 0 10 hm5C_associated_SNPs_16719 0 0 1 0 2 ESYT1 chr12:56536516 5'GT 56536516 Upstream 69bp
chr12 58114292 58114292 1 + C T BLCA 58114286 + 58114266 58114306 41 ACGAGAAACCTCAAGGAGATCTTCTTCAATATCTTGGTAAG ACGAGAAACCTCAAGGAGATCTTCTTTAATATCTTGGTAAG < 41bp 1 0.412910176890431 1 0.0927506387233734 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control OS9 ENSG00000135506 CDS Human protein_coding chr12:58114286 chr12:58114292 synonymous SNV . 0 27 hm5C_associated_SNPs_16720 0 0 1 0 1 OS9 chr12:58114301 5'GT 58114301 Upstream 10bp
chr12 58114292 58114292 1 + C T BLCA 58114289 + 58114269 58114309 41 AGAAACCTCAAGGAGATCTTCTTCAATATCTTGGTAAGAGG AGAAACCTCAAGGAGATCTTCTTTAATATCTTGGTAAGAGG < 41bp 1 0.354015883524091 1 0.404534071683884 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control OS9 ENSG00000135506 CDS Human protein_coding chr12:58114289 chr12:58114292 synonymous SNV . 0 24 hm5C_associated_SNPs_16721 0 0 1 0 1 OS9 chr12:58114301 5'GT 58114301 Upstream 10bp
chr20 57480468 57480468 1 + G C BLCA 57480488 + 57480468 57480508 41 GAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA CAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA < 41bp 1 0.463132447104217 1 0.370701938867569 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480488 chr20:57480468 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_16724 0 0 1 0 2 GNAS chr20:57480438 3'AG 57480438 Downstream 31bp
chr20 57480468 57480468 1 + G C BLCA 57480488 + 57480468 57480508 41 GAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA CAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA < 41bp 1 0.463132447104217 1 0.370701938867569 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480488 chr20:57480468 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_16724 0 0 1 0 2 GNAS chr20:57480535 5'GT 57480535 Upstream 68bp
chr12 69044231 69044231 1 + G C BLCA 69044226 + 69044206 69044246 41 TGTAGAAAAATACGATCCTACGATAGAAGATTCTTATAGAA TGTAGAAAAATACGATCCTACGATACAAGATTCTTATAGAA < 41bp 1 0.355188918462546 1 0.336372882127762 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAP1B ENSG00000127314 CDS Human protein_coding chr12:69044226 chr12:69044231 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_16725 0 0 0 0 2 RAP1B chr12:69044180 3'AG 69044180 Downstream 52bp
chr12 69044231 69044231 1 + G C BLCA 69044226 + 69044206 69044246 41 TGTAGAAAAATACGATCCTACGATAGAAGATTCTTATAGAA TGTAGAAAAATACGATCCTACGATACAAGATTCTTATAGAA < 41bp 1 0.355188918462546 1 0.336372882127762 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAP1B ENSG00000127314 CDS Human protein_coding chr12:69044226 chr12:69044231 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_16725 0 0 0 0 2 RAP1B chr12:69044248 5'GT 69044248 Upstream 18bp
chrX 106893251 106893251 1 + G T BLCA 106893248 + 106893228 106893268 41 CCGTTTCTTACCTATTCAGCCATGTCCCTTTATAATAGAGT CCGTTTCTTACCTATTCAGCCATTTCCCTTTATAATAGAGT < 41bp 1 0.0117776364440166 1 0.0528335571289062 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106893248 chrX:106893251 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_16726 0 0 1 0 1 PRPS1 chrX:106893170 3'AG 106893170 Downstream 82bp
chrX 106893251 106893251 1 + G T BLCA 106893253 + 106893233 106893273 41 TCTTACCTATTCAGCCATGTCCCTTTATAATAGAGTAACTT TCTTACCTATTCAGCCATTTCCCTTTATAATAGAGTAACTT < 41bp 1 0.0912619669387868 1 0.0837957262992859 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106893253 chrX:106893251 nonsynonymous SNV 0.999 3 19 hm5C_associated_SNPs_16727 0 0 1 0 1 PRPS1 chrX:106893170 3'AG 106893170 Downstream 82bp
chrX 70787373 70787373 1 + T C BLCA 70787359 + 70787339 70787379 41 CCCTATTTTAGATTCTGAAGCGTGTTCCCAATAGTGTACTC CCCTATTTTAGATTCTGAAGCGTGTTCCCAATAGCGTACTC < 41bp 1 0.230390086538671 1 0.060493677854538 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70787359 chrX:70787373 synonymous SNV . 0 35 hm5C_associated_SNPs_16728 0 0 1 0 1 OGT chrX:70787350 3'AG 70787350 Downstream 24bp
chr11 67353675 67353675 1 + G T BLCA 67353680 + 67353660 67353700 41 AGACCTTCATTGTGGGAGACCAGGTGAGCATCTGGCCCCAT AGACCTTCATTGTGGTAGACCAGGTGAGCATCTGGCCCCAT < 41bp 1 0.689402559002214 1 0.61240017414093 experiment 0.621194881995571 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67353680 chr11:67353675 nonsynonymous SNV 0.926 2 16 hm5C_associated_SNPs_16729 0 0 1 0 1 GSTP1 chr11:67353682 5'GT 67353682 Upstream 8bp
chr13 93879779 93879779 1 + G A BLCA 93879771 + 93879751 93879791 41 GCTGCTGCTCTCCCTCCCCGCCGGGGCGGATGTGAAGGCTC GCTGCTGCTCTCCCTCCCCGCCGGGGCGAATGTGAAGGCTC < 41bp 1 0.571905645889669 1 0.838721394538879 experiment 0.856188708220661 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPC6 ENSG00000183098 CDS Human protein_coding chr13:93879771 chr13:93879779 nonsynonymous SNV 0.998 1 29 hm5C_associated_SNPs_16730 0 0 1 0 1 GPC6 chr13:93879869 5'GT 93879869 Upstream 91bp
chr1 878363 878363 1 + G A BLCA 878356 + 878336 878376 41 CAAGCTCCAGCTGGAGGGGCCGGCGCCGAGGGGAAGGGGCT CAAGCTCCAGCTGGAGGGGCCGGCGCCAAGGGGAAGGGGCT < 41bp 1 0.582414480605575 1 0.643600344657898 experiment 0.835171038788851 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:878356 chr1:878363 nonsynonymous SNV 0.540 1 28 hm5C_associated_SNPs_16731 0 0 1 0 1 SAMD11 chr1:878438 5'GT 878438 Upstream 76bp
chr6 31516038 31516038 1 + C T BLCA 31516048 + 31516028 31516068 41 CCCAGGCCCTCCTCCAGCGACACCCAGGCCTCGATGTAGAT CCCAGGCCCTTCTCCAGCGACACCCAGGCCTCGATGTAGAT < 41bp 1 0.316557861637557 1 0.0310543775558472 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NFKBIL1 ENSG00000204498;ENSG00000213760 CDS Human protein_coding chr6:31516048 chr6:31516038 nonsynonymous SNV 0.998 1 11 hm5C_associated_SNPs_16735 0 0 1 0 1 NFKBIL1 chr6:31515940 3'AG 31515940 Downstream 99bp
chr11 6591874 6591874 1 + G C BLCA 6591872 + 6591852 6591892 41 AAGGGAGCTGGATGCAATGGCAGAGTGCAAGGCCCAGATGC AAGGGAGCTGGATGCAATGGCACAGTGCAAGGCCCAGATGC < 41bp 1 0.293211798513066 1 0.299270987510681 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNHD1 ENSG00000179532 CDS Human protein_coding chr11:6591872 chr11:6591874 nonsynonymous SNV 0.975 0 23 hm5C_associated_SNPs_16736 0 0 0 1 2 DNHD1 chr11:6591848 3'AG 6591848 Downstream 27bp
chr11 6591874 6591874 1 + G C BLCA 6591872 + 6591852 6591892 41 AAGGGAGCTGGATGCAATGGCAGAGTGCAAGGCCCAGATGC AAGGGAGCTGGATGCAATGGCACAGTGCAAGGCCCAGATGC < 41bp 1 0.293211798513066 1 0.299270987510681 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNHD1 ENSG00000179532 CDS Human protein_coding chr11:6591872 chr11:6591874 nonsynonymous SNV 0.975 0 23 hm5C_associated_SNPs_16736 0 0 0 1 2 DNHD1 chr11:6591850 3'AG 6591850 Downstream 25bp
chr3 62189597 62189597 1 + G C BLCA 62189585 + 62189565 62189605 41 AGCCTATGTCCCGCGGGGACCGATTTTCTGAAGACAGCAGA AGCCTATGTCCCGCGGGGACCGATTTTCTGAACACAGCAGA < 41bp 1 0.114565018731492 1 0.169639319181442 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:62189585 chr3:62189597 nonsynonymous SNV 0.997 1 33 hm5C_associated_SNPs_16737 0 0 0 0 1 PTPRG chr3:62189624 5'GT 62189624 Upstream 28bp
chr16 22335849 22335849 1 + T A BLCA 22335864 + 22335844 22335884 41 GGACTTCCTGGAGCACATGGCCGTGGTGAGGATCAACAAAG GGACTACCTGGAGCACATGGCCGTGGTGAGGATCAACAAAG < 41bp 1 0.290847525216769 1 0.257175892591476 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22335864 chr16:22335849 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_16740 0 0 1 0 1 POLR3E chr16:22335824 3'AG 22335824 Downstream 26bp
chr17 4799524 4799524 1 + G T BLCA 4799505 + 4799485 4799525 41 CAGTCCTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCGA CAGTCCTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCTA < 41bp 1 0.106803864793952 1 0.070437878370285 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799505 chr17:4799524 nonsynonymous SNV 0.993 4 40 hm5C_associated_SNPs_16741 0 0 1 0 1 MINK1 chr17:4799488 3'AG 4799488 Downstream 37bp
chr17 4799524 4799524 1 + G T BLCA 4799508 + 4799488 4799528 41 TCCTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCGACCT TCCTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCTACCT < 41bp 1 0.134589526169609 1 0.225900620222092 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799508 chr17:4799524 nonsynonymous SNV 0.993 4 37 hm5C_associated_SNPs_16742 0 0 1 0 1 MINK1 chr17:4799488 3'AG 4799488 Downstream 37bp
chr3 178917576 178917576 1 + G A BLCA 178917593 + 178917573 178917613 41 GCTGTGGATCTTAGGGACCTCAATTCACCTCATAGTAGAGC GCTATGGATCTTAGGGACCTCAATTCACCTCATAGTAGAGC < 41bp 1 0.14663197153207 1 0.26962423324585 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178917593 chr3:178917576 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_16743 0 0 1 0 1 PIK3CA chr3:178917478 3'AG 178917478 Downstream 99bp
chr8 22065000 22065000 1 + G A BLCA 22065011 + 22064991 22065031 41 CGGTCCAGCGAAAGGGCTTCCAGGCCTCCCACGCCACAGGT CGGTCCAGCAAAAGGGCTTCCAGGCCTCCCACGCCACAGGT < 41bp 1 0.505508532878838 1 0.745674073696136 experiment 0.988982934242324 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22065011 chr8:22065000 nonsynonymous SNV 0.901 3 10 hm5C_associated_SNPs_16744 0 0 0 0 1 BMP1 chr8:22065029 5'GT 22065029 Upstream 30bp
chr2 73476983 73476983 1 + C G BLCA 73476990 + 73476970 73477010 41 CAGTGTGAATGCTCTGTCAGCAGATGTGCTGGGTCGATGCC CAGTGTGAATGCTGTGTCAGCAGATGTGCTGGGTCGATGCC < 41bp 1 0.5928891236509 1 0.375213742256165 experiment 0.814221752698201 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT7 ENSG00000135624 CDS Human protein_coding chr2:73476990 chr2:73476983 nonsynonymous SNV 0.999 2 14 hm5C_associated_SNPs_16745 0 0 1 0 2 CCT7 chr2:73476947 3'AG 73476947 Downstream 37bp
chr2 73476983 73476983 1 + C G BLCA 73476990 + 73476970 73477010 41 CAGTGTGAATGCTCTGTCAGCAGATGTGCTGGGTCGATGCC CAGTGTGAATGCTGTGTCAGCAGATGTGCTGGGTCGATGCC < 41bp 1 0.5928891236509 1 0.375213742256165 experiment 0.814221752698201 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT7 ENSG00000135624 CDS Human protein_coding chr2:73476990 chr2:73476983 nonsynonymous SNV 0.999 2 14 hm5C_associated_SNPs_16745 0 0 1 0 2 CCT7 chr2:73477044 5'GT 73477044 Upstream 62bp
chr15 63354444 63354444 1 + G C BLCA 63354456 + 63354436 63354476 41 ATGAGGAAGAGATCAAGGTCCTTTCCGACAAGCTGAAGGAG ATGAGGAACAGATCAAGGTCCTTTCCGACAAGCTGAAGGAG < 41bp 1 0.0506826149606469 1 0.12857648730278 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPM1 ENSG00000140416 CDS Human protein_coding chr15:63354456 chr15:63354444 nonsynonymous SNV 0.996 3 9 hm5C_associated_SNPs_16746 0 0 1 0 2 TPM1 chr15:63354414 3'AG 63354414 Downstream 31bp
chr15 63354444 63354444 1 + G C BLCA 63354456 + 63354436 63354476 41 ATGAGGAAGAGATCAAGGTCCTTTCCGACAAGCTGAAGGAG ATGAGGAACAGATCAAGGTCCTTTCCGACAAGCTGAAGGAG < 41bp 1 0.0506826149606469 1 0.12857648730278 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPM1 ENSG00000140416 CDS Human protein_coding chr15:63354456 chr15:63354444 nonsynonymous SNV 0.996 3 9 hm5C_associated_SNPs_16746 0 0 1 0 2 TPM1 chr15:63354476 5'GT 63354476 Upstream 33bp
chr5 109155380 109155380 1 + G C BLCA 109155379 + 109155359 109155399 41 ATCTTTTAAAGATCTCTTTTCGAGCACATATACCGCCATTG ATCTTTTAAAGATCTCTTTTCCAGCACATATACCGCCATTG < 41bp 1 0.0632735686964294 1 0.267178654670715 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAN2A1 ENSG00000112893 CDS Human protein_coding chr5:109155379 chr5:109155380 nonsynonymous SNV 0.958 0 22 hm5C_associated_SNPs_16747 0 0 1 0 1 MAN2A1 chr5:109155370 3'AG 109155370 Downstream 11bp
chrX 48759277 48759277 1 + G C BLCA 48759267 + 48759247 48759287 41 TCCTGGCTCTCCCCACATGACCCCAACTCCGTGGTTACCAA TCCTGGCTCTCCCCACATGACCCCAACTCCCTGGTTACCAA < 41bp 1 0.706435831645746 1 0.0428555309772491 experiment 0.587128336708508 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759267 chrX:48759277 nonsynonymous SNV 0.747 1 31 hm5C_associated_SNPs_16748 0 0 1 0 2 PQBP1 chrX:48759207 3'AG 48759207 Downstream 71bp
chrX 48759277 48759277 1 + G C BLCA 48759267 + 48759247 48759287 41 TCCTGGCTCTCCCCACATGACCCCAACTCCGTGGTTACCAA TCCTGGCTCTCCCCACATGACCCCAACTCCCTGGTTACCAA < 41bp 1 0.706435831645746 1 0.0428555309772491 experiment 0.587128336708508 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759267 chrX:48759277 nonsynonymous SNV 0.747 1 31 hm5C_associated_SNPs_16748 0 0 1 0 2 PQBP1 chrX:48759319 5'GT 48759319 Upstream 43bp
chr1 55072931 55072931 1 + G A BLCA 55072914 + 55072894 55072934 41 GGACTTCGTGATCCTGGCCTCGAGGCGGAAGCCTTGTGACA GGACTTCGTGATCCTGGCCTCGAGGCGGAAGCCTTGTAACA < 41bp 1 0.700382210938164 1 0.877518892288208 experiment 0.599235578123673 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55072914 chr1:55072931 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_16749 0 0 0 0 1 ACOT11 chr1:55072938 5'GT 55072938 Upstream 8bp
chr19 36124047 36124047 1 + G A BLCA 36124053 + 36124033 36124073 41 CTCACCAGGCCCTCGTGGGCCCCCCTCTGCCTGGGCCCCCT CTCACCAGGCCCTCATGGGCCCCCCTCTGCCTGGGCCCCCT < 41bp 1 0.266870268490387 1 0.0687345564365387 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124053 chr19:36124047 nonsynonymous SNV 0.854 3 15 hm5C_associated_SNPs_16760 0 0 1 0 3 RBM42 chr19:36123979 3'AG 36123979 Downstream 69bp
chr19 36124047 36124047 1 + G A BLCA 36124053 + 36124033 36124073 41 CTCACCAGGCCCTCGTGGGCCCCCCTCTGCCTGGGCCCCCT CTCACCAGGCCCTCATGGGCCCCCCTCTGCCTGGGCCCCCT < 41bp 1 0.266870268490387 1 0.0687345564365387 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124053 chr19:36124047 nonsynonymous SNV 0.854 3 15 hm5C_associated_SNPs_16760 0 0 1 0 3 RBM42 chr19:36124000 3'AG 36124000 Downstream 48bp
chr19 36124047 36124047 1 + G A BLCA 36124053 + 36124033 36124073 41 CTCACCAGGCCCTCGTGGGCCCCCCTCTGCCTGGGCCCCCT CTCACCAGGCCCTCATGGGCCCCCCTCTGCCTGGGCCCCCT < 41bp 1 0.266870268490387 1 0.0687345564365387 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124053 chr19:36124047 nonsynonymous SNV 0.854 3 15 hm5C_associated_SNPs_16760 0 0 1 0 3 RBM42 chr19:36124003 3'AG 36124003 Downstream 45bp
chr16 1559872 1559872 1 + G T BLCA 1559884 + 1559864 1559904 41 GGACGCTGGCACTGAGGGCCCTGCTGCTTCTGCAGAGACTC GGACGCTGTCACTGAGGGCCCTGCTGCTTCTGCAGAGACTC < 41bp 1 0.418102226961637 1 0.106472313404083 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1559884 chr16:1559872 nonsynonymous SNV 0.119 3 9 hm5C_associated_SNPs_16761 0 0 1 0 1 TELO2 chr16:1559831 3'AG 1559831 Downstream 42bp
chr15 69737226 69737226 1 + C T BLCA 69737220 + 69737200 69737240 41 CAGATGGGTAGATCATAAGCCCGCCTCTAACATGCAAACTG CAGATGGGTAGATCATAAGCCCGCCTTTAACATGCAAACTG < 41bp 1 0.248619084748716 1 0.057417094707489 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69737220 chr15:69737226 nonsynonymous SNV 0.999 1 27 hm5C_associated_SNPs_16762 0 0 1 0 1 KIF23 chr15:69737129 3'AG 69737129 Downstream 98bp
chr15 69737226 69737226 1 + C T BLCA 69737224 + 69737204 69737244 41 TGGGTAGATCATAAGCCCGCCTCTAACATGCAAACTGAAAC TGGGTAGATCATAAGCCCGCCTTTAACATGCAAACTGAAAC < 41bp 1 0.0905079875952112 1 0.0423241257667542 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69737224 chr15:69737226 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_16763 0 0 1 0 1 KIF23 chr15:69737129 3'AG 69737129 Downstream 98bp
chr6 47577018 47577018 1 + G C BLCA 47577024 + 47577004 47577044 41 TGTTGTGCATTGTAGAAGCACTGAAAAAGGATCACGGGTAA TGTTGTGCATTGTACAAGCACTGAAAAAGGATCACGGGTAA < 41bp 1 0.68191520453543 1 0.402005523443222 experiment 0.63616959092914 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47577024 chr6:47577018 nonsynonymous SNV 0.998 2 15 hm5C_associated_SNPs_16764 0 0 1 0 1 CD2AP chr6:47577040 5'GT 47577040 Upstream 23bp
chr6 47577018 47577018 1 + G C BLCA 47577036 + 47577016 47577056 41 TAGAAGCACTGAAAAAGGATCACGGGTAAGTAGCCCTTCTT TACAAGCACTGAAAAAGGATCACGGGTAAGTAGCCCTTCTT < 41bp 1 0.717740328587789 1 0.863666117191315 experiment 0.564519342824422 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47577036 chr6:47577018 nonsynonymous SNV 0.998 2 3 hm5C_associated_SNPs_16765 0 0 1 0 1 CD2AP chr6:47577040 5'GT 47577040 Upstream 23bp
chr1 156105709 156105709 1 + G A BLCA 156105689 + 156105669 156105709 41 CAAACCCTCCCACCCCCCTTCAGCTGGCAGCCAAGGAGGCG CAAACCCTCCCACCCCCCTTCAGCTGGCAGCCAAGGAGGCA < 41bp 1 0.162776418885243 1 0.394623577594757 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156105689 chr1:156105709 synonymous SNV . 0 41 hm5C_associated_SNPs_16767 1 0 1 0 1 LMNA chr1:156105692 3'AG 156105692 Downstream 18bp
chr1 156105709 156105709 1 + G A BLCA 156105721 + 156105701 156105741 41 AAGGAGGCGAAGCTTCGAGACCTGGAGGACTCACTGGCCCG AAGGAGGCAAAGCTTCGAGACCTGGAGGACTCACTGGCCCG < 41bp 1 0.310599239213209 1 0.34722051024437 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156105721 chr1:156105709 synonymous SNV . 0 9 hm5C_associated_SNPs_16768 1 0 1 0 1 LMNA chr1:156105692 3'AG 156105692 Downstream 18bp
chr18 74639256 74639256 1 + G A BLCA 74639258 + 74639238 74639278 41 TCCAAGCATTCTGCAGCAGACGCTACAGCAGGGCAACCTAT TCCAAGCATTCTGCAGCAAACGCTACAGCAGGGCAACCTAT < 41bp 1 0.468951429183719 1 0.406246572732925 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74639258 chr18:74639256 synonymous SNV . 0 19 hm5C_associated_SNPs_16769 0 0 0 0 1 ZNF236 chr18:74639233 3'AG 74639233 Downstream 24bp
chr11 117152353 117152353 1 + G A BLCA 117152351 + 117152331 117152371 41 CATATCCAGTTAGTGAGGAACGGAGCCAAGCTGAGCAGCCT CATATCCAGTTAGTGAGGAACGAAGCCAAGCTGAGCAGCCT < 41bp 1 0.409203010888349 1 0.401753097772598 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152351 chr11:117152353 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_16770 0 0 1 0 2 RNF214 chr11:117152316 3'AG 117152316 Downstream 38bp
chr11 117152353 117152353 1 + G A BLCA 117152351 + 117152331 117152371 41 CATATCCAGTTAGTGAGGAACGGAGCCAAGCTGAGCAGCCT CATATCCAGTTAGTGAGGAACGAAGCCAAGCTGAGCAGCCT < 41bp 1 0.409203010888349 1 0.401753097772598 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152351 chr11:117152353 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_16770 0 0 1 0 2 RNF214 chr11:117152414 5'GT 117152414 Upstream 62bp
chr17 7156274 7156274 1 + G C BLCA 7156261 + 7156241 7156281 41 GAGCAAGTGCATATCCTGGGCTGTGAAGTGAGCGAGGAAGA GAGCAAGTGCATATCCTGGGCTGTGAAGTGAGCCAGGAAGA < 41bp 1 0.287436275120083 1 0.0857960283756256 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ELP5 ENSG00000170291 CDS Human protein_coding chr17:7156261 chr17:7156274 nonsynonymous SNV 0.945 3 34 hm5C_associated_SNPs_16771 0 0 1 0 2 ELP5 chr17:7156237 3'AG 7156237 Downstream 38bp
chr17 7156274 7156274 1 + G C BLCA 7156261 + 7156241 7156281 41 GAGCAAGTGCATATCCTGGGCTGTGAAGTGAGCGAGGAAGA GAGCAAGTGCATATCCTGGGCTGTGAAGTGAGCCAGGAAGA < 41bp 1 0.287436275120083 1 0.0857960283756256 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ELP5 ENSG00000170291 CDS Human protein_coding chr17:7156261 chr17:7156274 nonsynonymous SNV 0.945 3 34 hm5C_associated_SNPs_16771 0 0 1 0 2 ELP5 chr17:7156317 5'GT 7156317 Upstream 44bp
chr1 23208857 23208857 1 + T C BLCA 23208855 + 23208835 23208875 41 TCTGGCCTCTCTTCCAGCTCCATCGGCAGTGTCCATCATGC TCTGGCCTCTCTTCCAGCTCCACCGGCAGTGTCCATCATGC < 41bp 1 0.403501838634533 1 0.0751026570796967 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23208855 chr1:23208857 nonsynonymous SNV 0.900 3 23 hm5C_associated_SNPs_16772 0 0 0 0 1 EPHB2 chr1:23208852 3'AG 23208852 Downstream 6bp
chr17 80676928 80676928 1 + G C BLCA 80676908 + 80676888 80676928 41 GGAGCGTGCTGGTGATGGAGCACATGGACATGAGGCATCTG GGAGCGTGCTGGTGATGGAGCACATGGACATGAGGCATCTC < 41bp 1 0.499812819027647 1 0.0639490485191345 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80676908 chr17:80676928 synonymous SNV . 0 41 hm5C_associated_SNPs_16774 0 0 1 0 1 FN3KRP chr17:80676933 5'GT 80676933 Upstream 6bp
chr17 80676928 80676928 1 + G C BLCA 80676910 + 80676890 80676930 41 AGCGTGCTGGTGATGGAGCACATGGACATGAGGCATCTGAG AGCGTGCTGGTGATGGAGCACATGGACATGAGGCATCTCAG < 41bp 1 0.647460977981775 1 0.256482243537903 experiment 0.705078044036451 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80676910 chr17:80676928 synonymous SNV . 0 39 hm5C_associated_SNPs_16775 0 0 1 0 1 FN3KRP chr17:80676933 5'GT 80676933 Upstream 6bp
chr12 56531979 56531979 1 + G C BLCA 56531999 + 56531979 56532019 41 GAGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCG CAGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCG < 41bp 1 0.0489172124743826 1 0.536650359630585 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56531999 chr12:56531979 nonsynonymous SNV 0.998 2 1 hm5C_associated_SNPs_16776 0 0 1 0 2 ESYT1 chr12:56531967 3'AG 56531967 Downstream 13bp
chr12 56531979 56531979 1 + G C BLCA 56531999 + 56531979 56532019 41 GAGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCG CAGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCG < 41bp 1 0.0489172124743826 1 0.536650359630585 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56531999 chr12:56531979 nonsynonymous SNV 0.998 2 1 hm5C_associated_SNPs_16776 0 0 1 0 2 ESYT1 chr12:56532056 5'GT 56532056 Upstream 78bp
chr19 42373788 42373788 1 + C T BLCA 42373769 + 42373749 42373789 41 TGACCCTTCCCTCCCCACAGCGGCCGCAAACTGACACCTCA TGACCCTTCCCTCCCCACAGCGGCCGCAAACTGACACCTTA < 41bp 1 0.249318371754424 1 0.393706470727921 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373769 chr19:42373788 stopgain 1.000 1 40 hm5C_associated_SNPs_16777 0 0 1 0 2 RPS19 chr19:42373769 3'AG 42373769 Downstream 20bp
chr19 42373788 42373788 1 + C T BLCA 42373769 + 42373749 42373789 41 TGACCCTTCCCTCCCCACAGCGGCCGCAAACTGACACCTCA TGACCCTTCCCTCCCCACAGCGGCCGCAAACTGACACCTTA < 41bp 1 0.249318371754424 1 0.393706470727921 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373769 chr19:42373788 stopgain 1.000 1 40 hm5C_associated_SNPs_16777 0 0 1 0 2 RPS19 chr19:42373823 5'GT 42373823 Upstream 36bp
chr19 42373788 42373788 1 + C T BLCA 42373772 + 42373752 42373792 41 CCCTTCCCTCCCCACAGCGGCCGCAAACTGACACCTCAGGG CCCTTCCCTCCCCACAGCGGCCGCAAACTGACACCTTAGGG < 41bp 1 0.189920364883134 1 0.245908468961716 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373772 chr19:42373788 stopgain 1.000 1 37 hm5C_associated_SNPs_16778 0 0 1 0 2 RPS19 chr19:42373769 3'AG 42373769 Downstream 20bp
chr19 42373788 42373788 1 + C T BLCA 42373772 + 42373752 42373792 41 CCCTTCCCTCCCCACAGCGGCCGCAAACTGACACCTCAGGG CCCTTCCCTCCCCACAGCGGCCGCAAACTGACACCTTAGGG < 41bp 1 0.189920364883134 1 0.245908468961716 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373772 chr19:42373788 stopgain 1.000 1 37 hm5C_associated_SNPs_16778 0 0 1 0 2 RPS19 chr19:42373823 5'GT 42373823 Upstream 36bp
chr19 42373788 42373788 1 + C T BLCA 42373779 + 42373759 42373799 41 CTCCCCACAGCGGCCGCAAACTGACACCTCAGGGACAAAGA CTCCCCACAGCGGCCGCAAACTGACACCTTAGGGACAAAGA < 41bp 1 0.299013950887939 1 0.322599530220032 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373779 chr19:42373788 stopgain 1.000 1 30 hm5C_associated_SNPs_16779 0 0 1 0 2 RPS19 chr19:42373769 3'AG 42373769 Downstream 20bp
chr19 42373788 42373788 1 + C T BLCA 42373779 + 42373759 42373799 41 CTCCCCACAGCGGCCGCAAACTGACACCTCAGGGACAAAGA CTCCCCACAGCGGCCGCAAACTGACACCTTAGGGACAAAGA < 41bp 1 0.299013950887939 1 0.322599530220032 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373779 chr19:42373788 stopgain 1.000 1 30 hm5C_associated_SNPs_16779 0 0 1 0 2 RPS19 chr19:42373823 5'GT 42373823 Upstream 36bp
chr19 42373788 42373788 1 + C T BLCA 42373785 + 42373765 42373805 41 ACAGCGGCCGCAAACTGACACCTCAGGGACAAAGAGATCTG ACAGCGGCCGCAAACTGACACCTTAGGGACAAAGAGATCTG < 41bp 1 0.141478190238317 1 0.0475406646728516 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373785 chr19:42373788 stopgain 1.000 1 24 hm5C_associated_SNPs_16780 0 0 1 0 2 RPS19 chr19:42373769 3'AG 42373769 Downstream 20bp
chr19 42373788 42373788 1 + C T BLCA 42373785 + 42373765 42373805 41 ACAGCGGCCGCAAACTGACACCTCAGGGACAAAGAGATCTG ACAGCGGCCGCAAACTGACACCTTAGGGACAAAGAGATCTG < 41bp 1 0.141478190238317 1 0.0475406646728516 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373785 chr19:42373788 stopgain 1.000 1 24 hm5C_associated_SNPs_16780 0 0 1 0 2 RPS19 chr19:42373823 5'GT 42373823 Upstream 36bp
chr19 42373788 42373788 1 + C T BLCA 42373794 + 42373774 42373814 41 GCAAACTGACACCTCAGGGACAAAGAGATCTGGACAGAATC GCAAACTGACACCTTAGGGACAAAGAGATCTGGACAGAATC < 41bp 1 0.275675334070707 1 0.333170115947723 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373794 chr19:42373788 stopgain 1.000 1 15 hm5C_associated_SNPs_16781 0 0 1 0 2 RPS19 chr19:42373769 3'AG 42373769 Downstream 20bp
chr19 42373788 42373788 1 + C T BLCA 42373794 + 42373774 42373814 41 GCAAACTGACACCTCAGGGACAAAGAGATCTGGACAGAATC GCAAACTGACACCTTAGGGACAAAGAGATCTGGACAGAATC < 41bp 1 0.275675334070707 1 0.333170115947723 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373794 chr19:42373788 stopgain 1.000 1 15 hm5C_associated_SNPs_16781 0 0 1 0 2 RPS19 chr19:42373823 5'GT 42373823 Upstream 36bp
chr19 42373788 42373788 1 + C T BLCA 42373808 + 42373788 42373828 41 CAGGGACAAAGAGATCTGGACAGAATCGCCGGACAGGTAAG TAGGGACAAAGAGATCTGGACAGAATCGCCGGACAGGTAAG < 41bp 1 0.612051621551133 1 0.279759407043457 experiment 0.775896756897734 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373808 chr19:42373788 stopgain 1.000 1 1 hm5C_associated_SNPs_16782 0 0 1 0 2 RPS19 chr19:42373769 3'AG 42373769 Downstream 20bp
chr19 42373788 42373788 1 + C T BLCA 42373808 + 42373788 42373828 41 CAGGGACAAAGAGATCTGGACAGAATCGCCGGACAGGTAAG TAGGGACAAAGAGATCTGGACAGAATCGCCGGACAGGTAAG < 41bp 1 0.612051621551133 1 0.279759407043457 experiment 0.775896756897734 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373808 chr19:42373788 stopgain 1.000 1 1 hm5C_associated_SNPs_16782 0 0 1 0 2 RPS19 chr19:42373823 5'GT 42373823 Upstream 36bp
chr9 140136952 140136952 1 + G C BLCA 140136939 + 140136919 140136959 41 GACAAATGATTAGCTGTGTTCTCTCACAGGTCAGAGTGGTG GACAAATGATTAGCTGTGTTCTCTCACAGGTCACAGTGGTG < 41bp 1 0.211215483401261 1 0.105487614870071 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBB4B ENSG00000188229 CDS Human protein_coding chr9:140136939 chr9:140136952 nonsynonymous SNV 0.986 1 34 hm5C_associated_SNPs_16785 0 0 1 0 1 TUBB4B chr9:140136948 3'AG 140136948 Downstream 5bp
chr9 140136952 140136952 1 + G C BLCA 140136941 + 140136921 140136961 41 CAAATGATTAGCTGTGTTCTCTCACAGGTCAGAGTGGTGCT CAAATGATTAGCTGTGTTCTCTCACAGGTCACAGTGGTGCT < 41bp 1 0.362028670901961 1 0.169688105583191 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBB4B ENSG00000188229 CDS Human protein_coding chr9:140136941 chr9:140136952 nonsynonymous SNV 0.986 1 32 hm5C_associated_SNPs_16786 0 0 1 0 1 TUBB4B chr9:140136948 3'AG 140136948 Downstream 5bp
chr1 220964944 220964944 1 + C T BLCA 220964927 + 220964907 220964947 41 TGACCTGCGATGGTGACACCCTGACTCTCAGTGCAGCCTAC TGACCTGCGATGGTGACACCCTGACTCTCAGTGCAGCTTAC < 41bp 1 0.407884738552923 1 0.104949444532394 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC1 ENSG00000186205 CDS Human protein_coding chr1:220964927 chr1:220964944 synonymous SNV . 0 38 hm5C_associated_SNPs_16787 0 0 1 0 1 MARC1 chr1:220965006 5'GT 220965006 Upstream 63bp
chr1 220964944 220964944 1 + C T BLCA 220964933 + 220964913 220964953 41 GCGATGGTGACACCCTGACTCTCAGTGCAGCCTACACAAAG GCGATGGTGACACCCTGACTCTCAGTGCAGCTTACACAAAG < 41bp 1 0.752740198087403 1 0.369265079498291 experiment 0.494519603825194 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC1 ENSG00000186205 CDS Human protein_coding chr1:220964933 chr1:220964944 synonymous SNV . 0 32 hm5C_associated_SNPs_16788 0 0 1 0 1 MARC1 chr1:220965006 5'GT 220965006 Upstream 63bp
chr2 9528444 9528444 1 + G A BLCA 9528446 + 9528426 9528466 41 AGTCCCAACCGGCGGGAAGACCGGCCCATCAGCTTCTACCA AGTCCCAACCGGCGGGAAAACCGGCCCATCAGCTTCTACCA < 41bp 1 0.510281816157412 1 0.451862007379532 experiment 0.979436367685176 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ASAP2 ENSG00000151693 CDS Human protein_coding chr2:9528446 chr2:9528444 nonsynonymous SNV 0.990 0 19 hm5C_associated_SNPs_16789 0 0 1 0 1 ASAP2 chr2:9528423 3'AG 9528423 Downstream 22bp
chr14 24505784 24505784 1 + C T BLCA 24505774 + 24505754 24505794 41 GTCGGTGCGGTTGGCCAGCTCCGGGATGACCCGCCGGGACC GTCGGTGCGGTTGGCCAGCTCCGGGATGACTCGCCGGGACC < 41bp 1 0.702274875172041 1 0.817615032196045 experiment 0.595450249655919 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DHRS4L1 ENSG00000225766 ncRNA_exonic Human processed_transcript chr14:24505774 chr14:24505784 . . 0 31 hm5C_associated_SNPs_16790 0 0 0 0 1 DHRS4L1 chr14:24505837 5'GT 24505837 Upstream 54bp
chr1 44083216 44083216 1 + G C BLCA 44083229 + 44083209 44083249 41 CACTCTCGAGTCATCCTTACCTCTATCGATGGTGAGCCAAG CACTCTCCAGTCATCCTTACCTCTATCGATGGTGAGCCAAG < 41bp 1 0.32449430208038 1 0.764552533626556 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44083229 chr1:44083216 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_16791 0 0 0 0 1 PTPRF chr1:44083239 5'GT 44083239 Upstream 24bp
chr17 4859385 4859385 1 + C A BLCA 4859378 + 4859358 4859398 41 CCAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA CCAGGCCGTTGAGAAGAAGGCCTGCAAATGTCTGCTGCTGA < 41bp 1 0.136669842101232 1 0.0846039354801178 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859378 chr17:4859385 nonsynonymous SNV 0.973 2 28 hm5C_associated_SNPs_16794 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 24bp
chr17 4859385 4859385 1 + C A BLCA 4859378 + 4859358 4859398 41 CCAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA CCAGGCCGTTGAGAAGAAGGCCTGCAAATGTCTGCTGCTGA < 41bp 1 0.136669842101232 1 0.0846039354801178 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859378 chr17:4859385 nonsynonymous SNV 0.973 2 28 hm5C_associated_SNPs_16794 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 54bp
chr17 4859385 4859385 1 + C A BLCA 4859379 + 4859359 4859399 41 CAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAA CAGGCCGTTGAGAAGAAGGCCTGCAAATGTCTGCTGCTGAA < 41bp 1 0.769649941015654 1 0.106142818927765 experiment 0.460700117968692 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859379 chr17:4859385 nonsynonymous SNV 0.973 2 27 hm5C_associated_SNPs_16795 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 24bp
chr17 4859385 4859385 1 + C A BLCA 4859379 + 4859359 4859399 41 CAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAA CAGGCCGTTGAGAAGAAGGCCTGCAAATGTCTGCTGCTGAA < 41bp 1 0.769649941015654 1 0.106142818927765 experiment 0.460700117968692 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859379 chr17:4859385 nonsynonymous SNV 0.973 2 27 hm5C_associated_SNPs_16795 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 54bp
chr17 4859385 4859385 1 + C A BLCA 4859382 + 4859362 4859402 41 GCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGT GCCGTTGAGAAGAAGGCCTGCAAATGTCTGCTGCTGAAGGT < 41bp 1 0.433432536147316 1 0.201324671506882 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859382 chr17:4859385 nonsynonymous SNV 0.973 2 24 hm5C_associated_SNPs_16796 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 24bp
chr17 4859385 4859385 1 + C A BLCA 4859382 + 4859362 4859402 41 GCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGT GCCGTTGAGAAGAAGGCCTGCAAATGTCTGCTGCTGAAGGT < 41bp 1 0.433432536147316 1 0.201324671506882 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859382 chr17:4859385 nonsynonymous SNV 0.973 2 24 hm5C_associated_SNPs_16796 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 54bp
chr17 4859385 4859385 1 + C A BLCA 4859389 + 4859369 4859409 41 AGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAG AGAAGAAGGCCTGCAAATGTCTGCTGCTGAAGGTCAACCAG < 41bp 1 0.796123636104156 1 0.398133546113968 experiment 0.407752727791689 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859389 chr17:4859385 nonsynonymous SNV 0.973 2 17 hm5C_associated_SNPs_16797 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 24bp
chr17 4859385 4859385 1 + C A BLCA 4859389 + 4859369 4859409 41 AGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAG AGAAGAAGGCCTGCAAATGTCTGCTGCTGAAGGTCAACCAG < 41bp 1 0.796123636104156 1 0.398133546113968 experiment 0.407752727791689 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859389 chr17:4859385 nonsynonymous SNV 0.973 2 17 hm5C_associated_SNPs_16797 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 54bp
chr17 4859385 4859385 1 + C A BLCA 4859392 + 4859372 4859412 41 AGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAGATC AGAAGGCCTGCAAATGTCTGCTGCTGAAGGTCAACCAGATC < 41bp 1 0.380196841518047 1 0.122078061103821 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859392 chr17:4859385 nonsynonymous SNV 0.973 2 14 hm5C_associated_SNPs_16798 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 24bp
chr17 4859385 4859385 1 + C A BLCA 4859392 + 4859372 4859412 41 AGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAGATC AGAAGGCCTGCAAATGTCTGCTGCTGAAGGTCAACCAGATC < 41bp 1 0.380196841518047 1 0.122078061103821 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859392 chr17:4859385 nonsynonymous SNV 0.973 2 14 hm5C_associated_SNPs_16798 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 54bp
chr17 4859385 4859385 1 + C A BLCA 4859403 + 4859383 4859423 41 AACTGTCTGCTGCTGAAGGTCAACCAGATCGGCTCGGTGAC AAATGTCTGCTGCTGAAGGTCAACCAGATCGGCTCGGTGAC < 41bp 1 0.400706873601246 1 0.22324326634407 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859403 chr17:4859385 nonsynonymous SNV 0.973 2 3 hm5C_associated_SNPs_16799 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 24bp
chr17 4859385 4859385 1 + C A BLCA 4859403 + 4859383 4859423 41 AACTGTCTGCTGCTGAAGGTCAACCAGATCGGCTCGGTGAC AAATGTCTGCTGCTGAAGGTCAACCAGATCGGCTCGGTGAC < 41bp 1 0.400706873601246 1 0.22324326634407 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859403 chr17:4859385 nonsynonymous SNV 0.973 2 3 hm5C_associated_SNPs_16799 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 54bp
chr14 61997290 61997290 1 + G C BLCA 61997276 + 61997256 61997296 41 TGATGAGGTGGTCTACCCTACCTGGCTCCATGAAGATGCCA TGATGAGGTGGTCTACCCTACCTGGCTCCATGAACATGCCA < 41bp 1 0.122356696244432 1 0.102210938930511 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRKCH ENSG00000027075;ENSG00000258989 CDS Human other chr14:61997276 chr14:61997290 nonsynonymous SNV 0.998 3 35 hm5C_associated_SNPs_16801 0 0 0 0 1 PRKCH chr14:61997313 5'GT 61997313 Upstream 24bp
chr19 10789861 10789861 1 + G A BLCA 10789854 + 10789834 10789874 41 CTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG CTCGCGTGCCCACCTGGGGTCCCCTCCAAGGCTGGGTAAGG < 41bp 1 0.0768887030030459 1 0.0741359889507294 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789854 chr19:10789861 nonsynonymous SNV 0.996 3 28 hm5C_associated_SNPs_16802 0 0 1 0 2 ILF3 chr19:10789773 3'AG 10789773 Downstream 89bp
chr19 10789861 10789861 1 + G A BLCA 10789854 + 10789834 10789874 41 CTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG CTCGCGTGCCCACCTGGGGTCCCCTCCAAGGCTGGGTAAGG < 41bp 1 0.0768887030030459 1 0.0741359889507294 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789854 chr19:10789861 nonsynonymous SNV 0.996 3 28 hm5C_associated_SNPs_16802 0 0 1 0 2 ILF3 chr19:10789868 5'GT 10789868 Upstream 8bp
chr19 10789861 10789861 1 + G A BLCA 10789855 + 10789835 10789875 41 TCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC TCGCGTGCCCACCTGGGGTCCCCTCCAAGGCTGGGTAAGGC < 41bp 1 0.036576578329758 1 0.160623967647552 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789855 chr19:10789861 nonsynonymous SNV 0.996 3 27 hm5C_associated_SNPs_16803 0 0 1 0 2 ILF3 chr19:10789773 3'AG 10789773 Downstream 89bp
chr19 10789861 10789861 1 + G A BLCA 10789855 + 10789835 10789875 41 TCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC TCGCGTGCCCACCTGGGGTCCCCTCCAAGGCTGGGTAAGGC < 41bp 1 0.036576578329758 1 0.160623967647552 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789855 chr19:10789861 nonsynonymous SNV 0.996 3 27 hm5C_associated_SNPs_16803 0 0 1 0 2 ILF3 chr19:10789868 5'GT 10789868 Upstream 8bp
chr11 117152348 117152348 1 + G T BLCA 117152351 + 117152331 117152371 41 CATATCCAGTTAGTGAGGAACGGAGCCAAGCTGAGCAGCCT CATATCCAGTTAGTGAGTAACGGAGCCAAGCTGAGCAGCCT < 41bp 1 0.664667946429689 1 0.670540988445282 experiment 0.670664107140623 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152351 chr11:117152348 nonsynonymous SNV 0.992 3 18 hm5C_associated_SNPs_16804 0 0 1 0 2 RNF214 chr11:117152316 3'AG 117152316 Downstream 33bp
chr11 117152348 117152348 1 + G T BLCA 117152351 + 117152331 117152371 41 CATATCCAGTTAGTGAGGAACGGAGCCAAGCTGAGCAGCCT CATATCCAGTTAGTGAGTAACGGAGCCAAGCTGAGCAGCCT < 41bp 1 0.664667946429689 1 0.670540988445282 experiment 0.670664107140623 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152351 chr11:117152348 nonsynonymous SNV 0.992 3 18 hm5C_associated_SNPs_16804 0 0 1 0 2 RNF214 chr11:117152414 5'GT 117152414 Upstream 67bp
chr16 31487420 31487420 1 + G C BLCA 31487435 + 31487415 31487455 41 TCTTCGAGAAGGATGGAGCCCCCTTCTGCCCCGAGTGCTAC TCTTCCAGAAGGATGGAGCCCCCTTCTGCCCCGAGTGCTAC < 41bp 1 0.102728084458947 1 0.0356359779834747 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TGFB1I1 ENSG00000140682 CDS Human protein_coding chr16:31487435 chr16:31487420 nonsynonymous SNV 0.998 5 6 hm5C_associated_SNPs_16805 0 0 0 0 2 TGFB1I1 chr16:31487333 3'AG 31487333 Downstream 88bp
chr16 31487420 31487420 1 + G C BLCA 31487435 + 31487415 31487455 41 TCTTCGAGAAGGATGGAGCCCCCTTCTGCCCCGAGTGCTAC TCTTCCAGAAGGATGGAGCCCCCTTCTGCCCCGAGTGCTAC < 41bp 1 0.102728084458947 1 0.0356359779834747 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TGFB1I1 ENSG00000140682 CDS Human protein_coding chr16:31487435 chr16:31487420 nonsynonymous SNV 0.998 5 6 hm5C_associated_SNPs_16805 0 0 0 0 2 TGFB1I1 chr16:31487506 5'GT 31487506 Upstream 87bp
chr11 128680444 128680444 1 + G A BLCA 128680424 + 128680404 128680444 41 AGCGCCAACGCCAGCTGTATCACCTGGGAGGGGACCAACGG AGCGCCAACGCCAGCTGTATCACCTGGGAGGGGACCAACGA < 41bp 1 0.739001354153304 1 0.641043186187744 experiment 0.521997291693393 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FLI1 ENSG00000151702 CDS Human protein_coding chr11:128680424 chr11:128680444 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_16806 0 0 0 0 1 FLI1 chr11:128680354 3'AG 128680354 Downstream 91bp
chr1 153750361 153750361 1 + G A BLCA 153750343 + 153750323 153750363 41 ATTGGGGAGCTGTGCCGATACCTTGTCAACCAGCCCCCGGT ATTGGGGAGCTGTGCCGATACCTTGTCAACCAGCCCCCAGT < 41bp 1 0.204658768106387 1 0.0836926400661469 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750343 chr1:153750361 synonymous SNV . 0 39 hm5C_associated_SNPs_16808 0 0 0 0 1 SLC27A3 chr1:153750361 5'GT 153750361 Upstream 1bp
chr16 28970119 28970119 1 + G C BLCA 28970135 + 28970115 28970155 41 TGGAGAGACAGAGCTATCACCTACTGCCACTCCCAGGACCC TGGACAGACAGAGCTATCACCTACTGCCACTCCCAGGACCC < 41bp 1 0.453250974530526 1 0.032698005437851 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28970135 chr16:28970119 nonsynonymous SNV 0.999 4 5 hm5C_associated_SNPs_16812 0 0 1 0 2 NFATC2IP chr16:28970038 3'AG 28970038 Downstream 82bp
chr16 28970119 28970119 1 + G C BLCA 28970135 + 28970115 28970155 41 TGGAGAGACAGAGCTATCACCTACTGCCACTCCCAGGACCC TGGACAGACAGAGCTATCACCTACTGCCACTCCCAGGACCC < 41bp 1 0.453250974530526 1 0.032698005437851 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28970135 chr16:28970119 nonsynonymous SNV 0.999 4 5 hm5C_associated_SNPs_16812 0 0 1 0 2 NFATC2IP chr16:28970182 5'GT 28970182 Upstream 64bp
chr12 27908150 27908150 1 + G C BLCA 27908142 + 27908122 27908162 41 AGAATGGGAAAAAAGTAAGACTGAAGCAGACATGGAAGAGT AGAATGGGAAAAAAGTAAGACTGAAGCACACATGGAAGAGT < 41bp 1 0.578468714311282 1 0.514430165290833 experiment 0.843062571377436 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPS35 ENSG00000061794 CDS Human protein_coding chr12:27908142 chr12:27908150 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_16814 0 0 1 1 1 MRPS35 chr12:27908114 3'AG 27908114 Downstream 37bp
chr12 27908150 27908150 1 + G C BLCA 27908148 + 27908128 27908168 41 GGAAAAAAGTAAGACTGAAGCAGACATGGAAGAGTATATAT GGAAAAAAGTAAGACTGAAGCACACATGGAAGAGTATATAT < 41bp 1 0.45793985459062 1 0.454443901777267 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPS35 ENSG00000061794 CDS Human protein_coding chr12:27908148 chr12:27908150 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_16815 0 0 1 1 1 MRPS35 chr12:27908114 3'AG 27908114 Downstream 37bp
chr1 874759 874759 1 + C T BLCA 874779 + 874759 874799 41 CAGCGCCTCTACCACCTGGGCCTCCCCAGCCACGGTGAGGA TAGCGCCTCTACCACCTGGGCCTCCCCAGCCACGGTGAGGA < 41bp 1 0.0765679415018719 1 0.0606614947319031 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874779 chr1:874759 stopgain 0.942 1 1 hm5C_associated_SNPs_16816 0 0 0 0 2 SAMD11 chr1:874792 5'GT 874792 Upstream 34bp
chr1 874759 874759 1 + C T BLCA 874779 + 874759 874799 41 CAGCGCCTCTACCACCTGGGCCTCCCCAGCCACGGTGAGGA TAGCGCCTCTACCACCTGGGCCTCCCCAGCCACGGTGAGGA < 41bp 1 0.0765679415018719 1 0.0606614947319031 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874779 chr1:874759 stopgain 0.942 1 1 hm5C_associated_SNPs_16816 0 0 0 0 2 SAMD11 chr1:874840 5'GT 874840 Upstream 82bp
chr6 33172455 33172455 1 + C G BLCA 33172450 + 33172430 33172470 41 CCACCCACAGCCCGCCATGGCGTCTCAGCTCCAGAACCGAC CCACCCACAGCCCGCCATGGCGTCTGAGCTCCAGAACCGAC < 41bp 1 0.19540983687017 1 0.102204293012619 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSD17B8 ENSG00000204228 CDS Human protein_coding chr6:33172450 chr6:33172455 nonsynonymous SNV 0.997 0 26 hm5C_associated_SNPs_16817 0 0 1 0 1 HSD17B8 chr6:33172497 5'GT 33172497 Upstream 43bp
chr7 155534734 155534734 1 + G A BLCA 155534723 + 155534703 155534743 41 TGGCGGGTTCCAGAAGCTCACAGGGAAAGACGGAAGTGAAA TGGCGGGTTCCAGAAGCTCACAGGGAAAGACAGAAGTGAAA < 41bp 1 0.705299708783761 1 0.3010333776474 experiment 0.589400582432479 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM33 ENSG00000184863 CDS Human protein_coding chr7:155534723 chr7:155534734 synonymous SNV . 0 32 hm5C_associated_SNPs_16819 0 0 1 0 1 RBM33 chr7:155534800 5'GT 155534800 Upstream 67bp
chr16 697470 697470 1 + C T BLCA 697463 + 697443 697483 41 GTGTGAATGGCCGGCGGGCCCCCTCCACGTCCCCATCCTTC GTGTGAATGGCCGGCGGGCCCCCTCCATGTCCCCATCCTTC < 41bp 1 0.12016984133231 1 0.0445164442062378 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MCRIP2 ENSG00000172366 CDS Human protein_coding chr16:697463 chr16:697470 nonsynonymous SNV 0.042 0 28 hm5C_associated_SNPs_16820 0 0 1 0 1 MCRIP2 chr16:697417 3'AG 697417 Downstream 54bp
chr21 45222172 45222172 1 + G C BLCA 45222163 + 45222143 45222183 41 CCTGGTTCTCAGGCATTTTCCCTGAAGATGAGATCCCAGAG CCTGGTTCTCAGGCATTTTCCCTGAAGATCAGATCCCAGAG < 41bp 1 0.647037920837462 1 0.348154246807098 experiment 0.705924158325076 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45222163 chr21:45222172 nonsynonymous SNV 0.007 1 30 hm5C_associated_SNPs_16821 0 0 1 0 2 RRP1 chr21:45222155 3'AG 45222155 Downstream 18bp
chr21 45222172 45222172 1 + G C BLCA 45222163 + 45222143 45222183 41 CCTGGTTCTCAGGCATTTTCCCTGAAGATGAGATCCCAGAG CCTGGTTCTCAGGCATTTTCCCTGAAGATCAGATCCCAGAG < 41bp 1 0.647037920837462 1 0.348154246807098 experiment 0.705924158325076 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45222163 chr21:45222172 nonsynonymous SNV 0.007 1 30 hm5C_associated_SNPs_16821 0 0 1 0 2 RRP1 chr21:45222268 5'GT 45222268 Upstream 97bp
chr12 27788022 27788022 1 + C G BLCA 27788020 + 27788000 27788040 41 CCCAGATTCAACAGCAGAAACGCTTGTTGAATGGCTTCAGA CCCAGATTCAACAGCAGAAACGGTTGTTGAATGGCTTCAGA < 41bp 1 0.391962270366767 1 0.14746367931366 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27788020 chr12:27788022 nonsynonymous SNV 0.095 2 23 hm5C_associated_SNPs_16823 0 0 1 0 1 PPFIBP1 chr12:27788048 5'GT 27788048 Upstream 27bp
chr10 14909867 14909867 1 + G C BLCA 14909880 + 14909860 14909900 41 TGAGTCTGATGGGAAGAACTCTGCCAAAGAGGAAACCAAGT TGAGTCTCATGGGAAGAACTCTGCCAAAGAGGAAACCAAGT < 41bp 1 0.261756810531346 1 0.134808361530304 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HSPA14 ENSG00000187522 CDS Human protein_coding chr10:14909880 chr10:14909867 nonsynonymous SNV 0.975 1 8 hm5C_associated_SNPs_16824 0 0 1 0 1 HSPA14 chr10:14909908 5'GT 14909908 Upstream 42bp
chr7 142459637 142459637 1 + G A BLCA 142459625 + 142459605 142459645 41 ATGCCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGG ATGCCTGCCCTGCCCATCAGCCGCATCCAGGTAAGACTGGG < 41bp 1 0.498000808503156 1 0.325556576251984 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459625 chr7:142459637 synonymous SNV . 0 33 hm5C_associated_SNPs_16836 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 13bp
chr7 142459637 142459637 1 + G A BLCA 142459626 + 142459606 142459646 41 TGCCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGA TGCCTGCCCTGCCCATCAGCCGCATCCAGGTAAGACTGGGA < 41bp 1 0.316073897748931 1 0.375292360782623 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459626 chr7:142459637 synonymous SNV . 0 32 hm5C_associated_SNPs_16837 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 13bp
chr7 142459637 142459637 1 + G A BLCA 142459628 + 142459608 142459648 41 CCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGA CCTGCCCTGCCCATCAGCCGCATCCAGGTAAGACTGGGAGA < 41bp 1 0.2538153918004 1 0.139163643121719 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459628 chr7:142459637 synonymous SNV . 0 30 hm5C_associated_SNPs_16838 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 13bp
chr7 142459637 142459637 1 + G A BLCA 142459631 + 142459611 142459651 41 GCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGAGCA GCCCTGCCCATCAGCCGCATCCAGGTAAGACTGGGAGAGCA < 41bp 1 0.58100227346845 1 0.796656548976898 experiment 0.837995453063099 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459631 chr7:142459637 synonymous SNV . 0 27 hm5C_associated_SNPs_16839 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 13bp
chr7 142459637 142459637 1 + G A BLCA 142459632 + 142459612 142459652 41 CCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGAGCAC CCCTGCCCATCAGCCGCATCCAGGTAAGACTGGGAGAGCAC < 41bp 1 0.777795191812327 1 0.713959753513336 experiment 0.444409616375347 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459632 chr7:142459637 synonymous SNV . 0 26 hm5C_associated_SNPs_16840 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 13bp
chr7 142459637 142459637 1 + G A BLCA 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTAAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA < 41bp 1 0.686347732464636 1 0.137504130601883 experiment 0.627304535070727 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459637 synonymous SNV . 0 3 hm5C_associated_SNPs_16841 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 13bp
chr1 12364770 12364770 1 + G C BLCA 12364755 + 12364735 12364775 41 AGCAAGGGCCGCAACCCACACTGTCTGTTGGCCAAGAGTCC AGCAAGGGCCGCAACCCACACTGTCTGTTGGCCAACAGTCC < 41bp 1 0.0604839061279629 1 0.0676746964454651 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VPS13D ENSG00000048707 CDS Human protein_coding chr1:12364755 chr1:12364770 nonsynonymous SNV 0.281 0 36 hm5C_associated_SNPs_16842 0 0 1 0 1 VPS13D chr1:12364785 5'GT 12364785 Upstream 16bp
chr7 128407602 128407602 1 + G A BLCA 128407598 + 128407578 128407618 41 GTTGAGTTTCGGGATAAGAACCGTGATGGGAAGATGGACAA GTTGAGTTTCGGGATAAGAACCGTAATGGGAAGATGGACAA < 41bp 1 0.654714529178493 1 0.0463862121105194 experiment 0.690570941643014 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALU ENSG00000128595 CDS Human protein_coding chr7:128407598 chr7:128407602 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_16843 0 0 1 0 1 CALU chr7:128407510 3'AG 128407510 Downstream 93bp
chr7 128407602 128407602 1 + G A BLCA 128407599 + 128407579 128407619 41 TTGAGTTTCGGGATAAGAACCGTGATGGGAAGATGGACAAG TTGAGTTTCGGGATAAGAACCGTAATGGGAAGATGGACAAG < 41bp 1 0.633757563779847 1 0.255654573440552 experiment 0.732484872440306 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALU ENSG00000128595 CDS Human protein_coding chr7:128407599 chr7:128407602 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_16844 0 0 1 0 1 CALU chr7:128407510 3'AG 128407510 Downstream 93bp
chr9 140166654 140166654 1 + C T BLCA 140166668 + 140166648 140166688 41 TGGCTTCTTCCTCACCGCCTCTCCAAGGTAGGCCTGCTGGG TGGCTTTTTCCTCACCGCCTCTCCAAGGTAGGCCTGCTGGG < 41bp 1 0.663035299110931 1 0.928530931472778 experiment 0.673929401778138 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140166668 chr9:140166654 synonymous SNV . 0 7 hm5C_associated_SNPs_16845 0 0 1 0 1 NELFB chr9:140166674 5'GT 140166674 Upstream 21bp
chr19 13051185 13051185 1 + G A BLCA 13051171 + 13051151 13051191 41 TGGAAGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAG TGGAAGACGATTGGGACTTCCTGCCACCCAAGAAAATAAAG < 41bp 1 0.328975662000995 1 0.209674388170242 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051171 chr19:13051185 synonymous SNV . 0 35 hm5C_associated_SNPs_16846 0 0 1 0 1 CALR chr19:13051266 5'GT 13051266 Upstream 82bp
chr19 13051185 13051185 1 + G A BLCA 13051175 + 13051155 13051195 41 AGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAGGATC AGACGATTGGGACTTCCTGCCACCCAAGAAAATAAAGGATC < 41bp 1 0.38814611835477 1 0.134268015623093 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051175 chr19:13051185 synonymous SNV . 0 31 hm5C_associated_SNPs_16847 0 0 1 0 1 CALR chr19:13051266 5'GT 13051266 Upstream 82bp
chr21 45113165 45113165 1 + G C BLCA 45113170 + 45113150 45113190 41 CCTCCACGGGGTGCTGAAGACCCCCACCAGCTCACCTGCCA CCTCCACGGGGTGCTCAAGACCCCCACCAGCTCACCTGCCA < 41bp 1 0.269998023777899 1 0.081935316324234 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RRP1B ENSG00000160208 CDS Human protein_coding chr21:45113170 chr21:45113165 synonymous SNV . 0 16 hm5C_associated_SNPs_16850 0 0 1 0 1 RRP1B chr21:45113071 3'AG 45113071 Downstream 95bp
chr10 118314780 118314780 1 + C T BLCA 118314776 + 118314756 118314796 41 CCAAATTTGTGGATGTAATTCACACGGATGGTGCCCCCATA CCAAATTTGTGGATGTAATTCACATGGATGGTGCCCCCATA < 41bp 1 0.719080763127447 1 0.383551508188248 experiment 0.561838473745107 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314776 chr10:118314780 nonsynonymous SNV 0.919 5 25 hm5C_associated_SNPs_16851 1 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 30bp
chr10 118314780 118314780 1 + C T BLCA 118314778 + 118314758 118314798 41 AAATTTGTGGATGTAATTCACACGGATGGTGCCCCCATAGT AAATTTGTGGATGTAATTCACATGGATGGTGCCCCCATAGT < 41bp 1 0.715028609575942 1 0.25628399848938 experiment 0.569942780848115 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314778 chr10:118314780 nonsynonymous SNV 0.919 5 23 hm5C_associated_SNPs_16852 1 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 30bp
chr10 118314780 118314780 1 + C T BLCA 118314789 + 118314769 118314809 41 TGTAATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGG TGTAATTCACATGGATGGTGCCCCCATAGTCCCCAATTTGG < 41bp 1 0.119792470305681 1 0.0291683673858643 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314789 chr10:118314780 nonsynonymous SNV 0.919 5 12 hm5C_associated_SNPs_16853 1 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 30bp
chr10 118314780 118314780 1 + C T BLCA 118314790 + 118314770 118314810 41 GTAATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGGG GTAATTCACATGGATGGTGCCCCCATAGTCCCCAATTTGGG < 41bp 1 0.511876618652681 1 0.101791381835938 experiment 0.976246762694638 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314790 chr10:118314780 nonsynonymous SNV 0.919 5 11 hm5C_associated_SNPs_16854 1 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 30bp
chr10 118314780 118314780 1 + C T BLCA 118314791 + 118314771 118314811 41 TAATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGGGT TAATTCACATGGATGGTGCCCCCATAGTCCCCAATTTGGGT < 41bp 1 0.110241680129692 1 0.0577452778816223 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314791 chr10:118314780 nonsynonymous SNV 0.919 5 10 hm5C_associated_SNPs_16855 1 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 30bp
chr10 118314780 118314780 1 + C T BLCA 118314792 + 118314772 118314812 41 AATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGGGTG AATTCACATGGATGGTGCCCCCATAGTCCCCAATTTGGGTG < 41bp 1 0.37325581942458 1 0.145056307315826 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314792 chr10:118314780 nonsynonymous SNV 0.919 5 9 hm5C_associated_SNPs_16856 1 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 30bp
chr10 118314780 118314780 1 + C T BLCA 118314793 + 118314773 118314813 41 ATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGGGTGA ATTCACATGGATGGTGCCCCCATAGTCCCCAATTTGGGTGA < 41bp 1 0.585443567728676 1 0.344511568546295 experiment 0.829112864542648 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314793 chr10:118314780 nonsynonymous SNV 0.919 5 8 hm5C_associated_SNPs_16857 1 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 30bp
chr10 118314780 118314780 1 + C T BLCA 118314799 + 118314779 118314819 41 ACGGATGGTGCCCCCATAGTCCCCAATTTGGGTGAGTTCCT ATGGATGGTGCCCCCATAGTCCCCAATTTGGGTGAGTTCCT < 41bp 1 0.704670797723826 1 0.187662273645401 experiment 0.590658404552348 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314799 chr10:118314780 nonsynonymous SNV 0.919 5 2 hm5C_associated_SNPs_16858 1 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 30bp
chr10 118314780 118314780 1 + C T BLCA 118314800 + 118314780 118314820 41 CGGATGGTGCCCCCATAGTCCCCAATTTGGGTGAGTTCCTC TGGATGGTGCCCCCATAGTCCCCAATTTGGGTGAGTTCCTC < 41bp 1 0.583851485050352 1 0.12281060218811 experiment 0.832297029899296 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314800 chr10:118314780 nonsynonymous SNV 0.919 5 1 hm5C_associated_SNPs_16859 1 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 30bp
chr19 13051415 13051415 1 + G A BLCA 13051402 + 13051382 13051422 41 GACCCTGATGCTAAGAAGCCCGAGGACTGGGATGAAGAGAT GACCCTGATGCTAAGAAGCCCGAGGACTGGGATAAAGAGAT < 41bp 1 0.545850874507467 1 0.563229858875275 experiment 0.908298250985067 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALR ENSG00000179218 CDS Human protein_coding chr19:13051402 chr19:13051415 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_16860 0 0 1 0 2 CALR chr19:13051355 3'AG 13051355 Downstream 61bp
chr19 13051415 13051415 1 + G A BLCA 13051402 + 13051382 13051422 41 GACCCTGATGCTAAGAAGCCCGAGGACTGGGATGAAGAGAT GACCCTGATGCTAAGAAGCCCGAGGACTGGGATAAAGAGAT < 41bp 1 0.545850874507467 1 0.563229858875275 experiment 0.908298250985067 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALR ENSG00000179218 CDS Human protein_coding chr19:13051402 chr19:13051415 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_16860 0 0 1 0 2 CALR chr19:13051468 5'GT 13051468 Upstream 54bp
chr19 13051418 13051418 1 + G A BLCA 13051402 + 13051382 13051422 41 GACCCTGATGCTAAGAAGCCCGAGGACTGGGATGAAGAGAT GACCCTGATGCTAAGAAGCCCGAGGACTGGGATGAAAAGAT < 41bp 1 0.546786786045473 1 0.703466057777405 experiment 0.906426427909054 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALR ENSG00000179218 CDS Human protein_coding chr19:13051402 chr19:13051418 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_16861 0 0 1 0 2 CALR chr19:13051355 3'AG 13051355 Downstream 64bp
chr19 13051418 13051418 1 + G A BLCA 13051402 + 13051382 13051422 41 GACCCTGATGCTAAGAAGCCCGAGGACTGGGATGAAGAGAT GACCCTGATGCTAAGAAGCCCGAGGACTGGGATGAAAAGAT < 41bp 1 0.546786786045473 1 0.703466057777405 experiment 0.906426427909054 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALR ENSG00000179218 CDS Human protein_coding chr19:13051402 chr19:13051418 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_16861 0 0 1 0 2 CALR chr19:13051468 5'GT 13051468 Upstream 51bp
chr1 45267308 45267308 1 + C T BLCA 45267317 + 45267297 45267337 41 CTGGCCCACATCTGGAAGGCCCGGCACACCCTGTTGGAGCC CTGGCCCACATTTGGAAGGCCCGGCACACCCTGTTGGAGCC < 41bp 1 0.201245626668581 1 0.412274360656738 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267317 chr1:45267308 synonymous SNV . 0 12 hm5C_associated_SNPs_16862 0 0 1 0 1 PLK3 chr1:45267294 3'AG 45267294 Downstream 15bp
chr22 24226515 24226515 1 + G A BLCA 24226534 + 24226514 24226554 41 AGAGCTGTTTGACCAGATGGCCAGGCCTGCTGCCTGCATGG AAAGCTGTTTGACCAGATGGCCAGGCCTGCTGCCTGCATGG < 41bp 1 0.381549959870403 1 0.253114998340607 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24226534 chr22:24226515 nonsynonymous SNV 0.992 5 2 hm5C_associated_SNPs_16863 0 0 1 1 1 SLC2A11 chr22:24226489 3'AG 24226489 Downstream 27bp
chr11 107917093 107917093 1 + G A BLCA 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGTTTATTAAGCAAGCACAAGCAGTAAGTTCTACATGC < 41bp 1 0.312319609196946 1 0.266749799251556 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917093 synonymous SNV . 0 23 hm5C_associated_SNPs_16865 0 0 1 2 2 CUL5 chr11:107916997 3'AG 107916997 Downstream 97bp
chr11 107917093 107917093 1 + G A BLCA 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGTTTATTAAGCAAGCACAAGCAGTAAGTTCTACATGC < 41bp 1 0.312319609196946 1 0.266749799251556 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917093 synonymous SNV . 0 23 hm5C_associated_SNPs_16865 0 0 1 2 2 CUL5 chr11:107917096 5'GT 107917096 Upstream 4bp
chr22 39770461 39770461 1 + C T BLCA 39770450 + 39770430 39770470 41 ATGGCGTGGCCGTGGGCGTGCTCGCCTTCCTCACCTGCCTG ATGGCGTGGCCGTGGGCGTGCTCGCCTTCCTTACCTGCCTG < 41bp 1 0.63282118563739 1 0.272063881158829 experiment 0.734357628725221 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYNGR1 ENSG00000100321 CDS Human protein_coding chr22:39770450 chr22:39770461 synonymous SNV . 0 32 hm5C_associated_SNPs_16866 0 0 1 0 1 SYNGR1 chr22:39770558 5'GT 39770558 Upstream 98bp
chr1 1246357 1246357 1 + G A BLCA 1246369 + 1246349 1246389 41 GTGAAGACGATTCTGGAGAGCCAAGATCCCCTGGGCAAGCA GTGAAGACAATTCTGGAGAGCCAAGATCCCCTGGGCAAGCA < 41bp 1 0.296945341377314 1 0.223113805055618 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PUSL1 ENSG00000169972 CDS Human protein_coding chr1:1246369 chr1:1246357 synonymous SNV . 0 9 hm5C_associated_SNPs_16867 0 0 1 0 2 PUSL1 chr1:1246289 3'AG 1246289 Downstream 69bp
chr1 1246357 1246357 1 + G A BLCA 1246369 + 1246349 1246389 41 GTGAAGACGATTCTGGAGAGCCAAGATCCCCTGGGCAAGCA GTGAAGACAATTCTGGAGAGCCAAGATCCCCTGGGCAAGCA < 41bp 1 0.296945341377314 1 0.223113805055618 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PUSL1 ENSG00000169972 CDS Human protein_coding chr1:1246369 chr1:1246357 synonymous SNV . 0 9 hm5C_associated_SNPs_16867 0 0 1 0 2 PUSL1 chr1:1246451 5'GT 1246451 Upstream 95bp
chr12 57599381 57599381 1 + C G BLCA 57599390 + 57599370 57599410 41 TGCTCCCAGCTCTGCAACAACACCAAGGGCGGCCACCTCTG TGCTCCCAGCTGTGCAACAACACCAAGGGCGGCCACCTCTG < 41bp 1 0.429994985162989 1 0.265861868858337 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599390 chr12:57599381 synonymous SNV . 0 12 hm5C_associated_SNPs_16868 0 0 1 0 2 LRP1 chr12:57599341 3'AG 57599341 Downstream 41bp
chr12 57599381 57599381 1 + C G BLCA 57599390 + 57599370 57599410 41 TGCTCCCAGCTCTGCAACAACACCAAGGGCGGCCACCTCTG TGCTCCCAGCTGTGCAACAACACCAAGGGCGGCCACCTCTG < 41bp 1 0.429994985162989 1 0.265861868858337 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599390 chr12:57599381 synonymous SNV . 0 12 hm5C_associated_SNPs_16868 0 0 1 0 2 LRP1 chr12:57599460 5'GT 57599460 Upstream 80bp
chr11 65826374 65826374 1 + C T BLCA 65826372 + 65826352 65826392 41 CGAGGGGTGTCCTCTGAGAGCTCTGGGGACCGGGAGAAAGA CGAGGGGTGTCCTCTGAGAGCTTTGGGGACCGGGAGAAAGA < 41bp 1 0.245988896469722 1 0.167964398860931 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65826372 chr11:65826374 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_16869 0 0 1 0 1 SF3B2 chr11:65826301 3'AG 65826301 Downstream 74bp
chr11 65826374 65826374 1 + C T BLCA 65826381 + 65826361 65826401 41 TCCTCTGAGAGCTCTGGGGACCGGGAGAAAGACTCAACCCG TCCTCTGAGAGCTTTGGGGACCGGGAGAAAGACTCAACCCG < 41bp 1 0.578773676124234 1 0.578802049160004 experiment 0.842452647751533 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65826381 chr11:65826374 nonsynonymous SNV 0.999 1 14 hm5C_associated_SNPs_16870 0 0 1 0 1 SF3B2 chr11:65826301 3'AG 65826301 Downstream 74bp
chr8 121468867 121468867 1 + C A BLCA 121468848 + 121468828 121468868 41 ATGTTGTATCTTTAGAAGATCTCAGAAATGTTATTGACTCA ATGTTGTATCTTTAGAAGATCTCAGAAATGTTATTGACTAA < 41bp 1 0.393755359137925 1 0.220908403396606 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTBP ENSG00000172167 CDS Human protein_coding chr8:121468848 chr8:121468867 stopgain 0.949 0 40 hm5C_associated_SNPs_16872 0 0 1 0 2 MTBP chr8:121468793 3'AG 121468793 Downstream 75bp
chr8 121468867 121468867 1 + C A BLCA 121468848 + 121468828 121468868 41 ATGTTGTATCTTTAGAAGATCTCAGAAATGTTATTGACTCA ATGTTGTATCTTTAGAAGATCTCAGAAATGTTATTGACTAA < 41bp 1 0.393755359137925 1 0.220908403396606 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTBP ENSG00000172167 CDS Human protein_coding chr8:121468848 chr8:121468867 stopgain 0.949 0 40 hm5C_associated_SNPs_16872 0 0 1 0 2 MTBP chr8:121468910 5'GT 121468910 Upstream 44bp
chr13 114541062 114541062 1 - G A BLCA 114541049 - 114541029 114541069 41 CTCTCCTCTGATGGCAGGACCTGCCAAGGTAAGGCCCTGGG CTCTCCTTTGATGGCAGGACCTGCCAAGGTAAGGCCCTGGG < 41bp 1 0.304549784733654 1 0.0914443731307983 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAS6 ENSG00000183087 CDS Human protein_coding chr13:114541049 chr13:114541062 nonsynonymous SNV 0.001 1 8 hm5C_associated_SNPs_16873 0 0 1 0 1 GAS6 chr13:114541042 5'GT 114541042 Upstream 21bp
chr2 101598812 101598812 1 + C T BLCA 101598827 + 101598807 101598847 41 CAGCTCTGCCTGGTCCAGGACTCCAACGTCCAGGTGATCCC CAGCTTTGCCTGGTCCAGGACTCCAACGTCCAGGTGATCCC < 41bp 1 0.722171442379677 1 0.977734744548798 experiment 0.555657115240646 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101598827 chr2:101598812 synonymous SNV . 0 6 hm5C_associated_SNPs_16875 0 0 1 0 1 NPAS2 chr2:101598839 5'GT 101598839 Upstream 28bp
chr1 22835057 22835057 1 + C T BLCA 22835072 + 22835052 22835092 41 TGGTTCAGGTGGTTTCAATTCTCTGATATCAGCAGTTCTAG TGGTTTAGGTGGTTTCAATTCTCTGATATCAGCAGTTCTAG < 41bp 1 0.445053283914895 1 0.749760985374451 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22835072 chr1:22835057 nonsynonymous SNV 0.996 2 6 hm5C_associated_SNPs_16876 0 0 1 0 1 ZBTB40 chr1:22835023 3'AG 22835023 Downstream 35bp
chr3 136667120 136667120 1 + C T BLCA 136667129 + 136667109 136667149 41 TTTCTCAGTATCACTAAAAGCACAAGGGAAAAACAAGCATT TTTCTCAGTATTACTAAAAGCACAAGGGAAAAACAAGCATT < 41bp 1 0.743782229408404 1 0.310265362262726 experiment 0.512435541183193 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NCK1 ENSG00000158092 CDS Human protein_coding chr3:136667129 chr3:136667120 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_16884 0 0 1 0 1 NCK1 chr3:136667101 3'AG 136667101 Downstream 20bp
chr8 41355114 41355114 1 + C T BLCA 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTCGGCGGCCAGTCATATCTTGAAGGTTGT < 41bp 1 0.153513517466846 1 0.156774312257767 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355114 synonymous SNV . 0 32 hm5C_associated_SNPs_16885 0 0 1 0 2 GOLGA7 chr8:41355028 3'AG 41355028 Downstream 87bp
chr8 41355114 41355114 1 + C T BLCA 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTCGGCGGCCAGTCATATCTTGAAGGTTGT < 41bp 1 0.153513517466846 1 0.156774312257767 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355114 synonymous SNV . 0 32 hm5C_associated_SNPs_16885 0 0 1 0 2 GOLGA7 chr8:41355180 5'GT 41355180 Upstream 67bp
chr14 37739687 37739687 1 + C T BLCA 37739679 + 37739659 37739699 41 AGAGAAAACTAAAGTTTAAGCTGGAACTCCAAGAGAAAGAA AGAGAAAACTAAAGTTTAAGCTGGAACTTCAAGAGAAAGAA < 41bp 1 0.637133828047031 1 0.482292026281357 experiment 0.725732343905938 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MIPOL1 ENSG00000151338 CDS Human protein_coding chr14:37739679 chr14:37739687 synonymous SNV . 0 29 hm5C_associated_SNPs_16886 0 0 1 0 2 MIPOL1 chr14:37739625 3'AG 37739625 Downstream 63bp
chr14 37739687 37739687 1 + C T BLCA 37739679 + 37739659 37739699 41 AGAGAAAACTAAAGTTTAAGCTGGAACTCCAAGAGAAAGAA AGAGAAAACTAAAGTTTAAGCTGGAACTTCAAGAGAAAGAA < 41bp 1 0.637133828047031 1 0.482292026281357 experiment 0.725732343905938 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MIPOL1 ENSG00000151338 CDS Human protein_coding chr14:37739679 chr14:37739687 synonymous SNV . 0 29 hm5C_associated_SNPs_16886 0 0 1 0 2 MIPOL1 chr14:37739730 5'GT 37739730 Upstream 44bp
chr12 79689917 79689917 1 + C G BLCA 79689904 + 79689884 79689924 41 CGCCTTGGACATGGGGGGCACATCTGATCCTTACGTGAAAG CGCCTTGGACATGGGGGGCACATCTGATCCTTAGGTGAAAG < 41bp 1 0.173691375528486 1 0.166295737028122 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYT1 ENSG00000067715 CDS Human protein_coding chr12:79689904 chr12:79689917 stopgain 0.987 1 34 hm5C_associated_SNPs_16887 0 0 0 0 2 SYT1 chr12:79689849 3'AG 79689849 Downstream 69bp
chr12 79689917 79689917 1 + C G BLCA 79689904 + 79689884 79689924 41 CGCCTTGGACATGGGGGGCACATCTGATCCTTACGTGAAAG CGCCTTGGACATGGGGGGCACATCTGATCCTTAGGTGAAAG < 41bp 1 0.173691375528486 1 0.166295737028122 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYT1 ENSG00000067715 CDS Human protein_coding chr12:79689904 chr12:79689917 stopgain 0.987 1 34 hm5C_associated_SNPs_16887 0 0 0 0 2 SYT1 chr12:79690016 5'GT 79690016 Upstream 100bp
chr22 50609337 50609337 1 + C T BLCA 50609321 + 50609301 50609341 41 CTGCCGTTCGACCGGGTGGTCACCATCGGCACCGTGCTGGT CTGCCGTTCGACCGGGTGGTCACCATCGGCACCGTGTTGGT < 41bp 1 0.794233686640101 1 0.460719883441925 experiment 0.411532626719799 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PANX2 ENSG00000073150 CDS Human protein_coding chr22:50609321 chr22:50609337 synonymous SNV . 0 37 hm5C_associated_SNPs_16888 0 0 1 0 1 PANX2 chr22:50609385 5'GT 50609385 Upstream 49bp
chr3 126724992 126724992 1 + C T BLCA 126725001 + 126724981 126725021 41 TCTGTGGACTTCGTCTTCTACAACTGCAGCGTCCACCAGTC TCTGTGGACTTTGTCTTCTACAACTGCAGCGTCCACCAGTC < 41bp 1 0.232396702415878 1 0.149115413427353 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126725001 chr3:126724992 synonymous SNV . 0 12 hm5C_associated_SNPs_16889 0 0 1 0 2 PLXNA1 chr3:126724922 3'AG 126724922 Downstream 71bp
chr3 126724992 126724992 1 + C T BLCA 126725001 + 126724981 126725021 41 TCTGTGGACTTCGTCTTCTACAACTGCAGCGTCCACCAGTC TCTGTGGACTTTGTCTTCTACAACTGCAGCGTCCACCAGTC < 41bp 1 0.232396702415878 1 0.149115413427353 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126725001 chr3:126724992 synonymous SNV . 0 12 hm5C_associated_SNPs_16889 0 0 1 0 2 PLXNA1 chr3:126725021 5'GT 126725021 Upstream 30bp
chr11 94554952 94554952 1 + C T BLCA 94554949 + 94554929 94554969 41 ACCGGGTGCTTCACCAGGAACTTCAGGGTTACTACGACAAT ACCGGGTGCTTCACCAGGAACTTTAGGGTTACTACGACAAT < 41bp 1 0.156933209467698 1 0.0426737070083618 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94554949 chr11:94554952 stopgain 0.999 1 24 hm5C_associated_SNPs_16890 0 0 1 0 1 AMOTL1 chr11:94554987 5'GT 94554987 Upstream 36bp
chr5 149925000 149925000 1 + C T BLCA 149925006 + 149924986 149925026 41 CCCAAAGCCAAGGTCCTGACCATCCTCATCAACCCCGCGGA CCCAAAGCCAAGGTTCTGACCATCCTCATCAACCCCGCGGA < 41bp 1 0.146758227461805 1 0.041012167930603 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDST1 ENSG00000070614 CDS Human protein_coding chr5:149925006 chr5:149925000 synonymous SNV . 0 15 hm5C_associated_SNPs_16891 0 0 1 0 1 NDST1 chr5:149925048 5'GT 149925048 Upstream 49bp
chr1 44083220 44083220 1 + C T BLCA 44083229 + 44083209 44083249 41 CACTCTCGAGTCATCCTTACCTCTATCGATGGTGAGCCAAG CACTCTCGAGTTATCCTTACCTCTATCGATGGTGAGCCAAG < 41bp 1 0.335770149019023 1 0.833068251609802 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44083229 chr1:44083220 synonymous SNV . 0 12 hm5C_associated_SNPs_16893 0 0 0 0 1 PTPRF chr1:44083239 5'GT 44083239 Upstream 20bp
chr19 1978471 1978471 1 + C T BLCA 1978465 + 1978445 1978485 41 CGATCAAGTCCCGGGCCCCGCAGCTGCACCTGGAGTACCGG CGATCAAGTCCCGGGCCCCGCAGCTGTACCTGGAGTACCGG < 41bp 1 0.533353644563467 1 0.707549750804901 experiment 0.933292710873066 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1978465 chr19:1978471 nonsynonymous SNV 0.999 1 27 hm5C_associated_SNPs_16894 0 0 1 0 2 CSNK1G2 chr19:1978441 3'AG 1978441 Downstream 31bp
chr19 1978471 1978471 1 + C T BLCA 1978465 + 1978445 1978485 41 CGATCAAGTCCCGGGCCCCGCAGCTGCACCTGGAGTACCGG CGATCAAGTCCCGGGCCCCGCAGCTGTACCTGGAGTACCGG < 41bp 1 0.533353644563467 1 0.707549750804901 experiment 0.933292710873066 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1978465 chr19:1978471 nonsynonymous SNV 0.999 1 27 hm5C_associated_SNPs_16894 0 0 1 0 2 CSNK1G2 chr19:1978510 5'GT 1978510 Upstream 40bp
chr1 41475876 41475876 1 + G C BLCA 41475860 + 41475840 41475880 41 TATAGTGACAGGAGTGGAAGCAGCTCCCCTGACTCTGAAAT TATAGTGACAGGAGTGGAAGCAGCTCCCCTGACTCTCAAAT < 41bp 1 0.326585811537371 1 0.839017391204834 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CTPS1 ENSG00000171793 CDS Human protein_coding chr1:41475860 chr1:41475876 nonsynonymous SNV 0.999 2 37 hm5C_associated_SNPs_16895 0 0 1 0 1 CTPS1 chr1:41475833 3'AG 41475833 Downstream 44bp
chr17 39978063 39978063 1 + G A BLCA 39978062 + 39978042 39978082 41 CAAGGATGGCGAGGTCCCTCCGGAGGAGGTGGGTGAAGGTT CAAGGATGGCGAGGTCCCTCCAGAGGAGGTGGGTGAAGGTT < 41bp 1 0.530462483004061 1 0.742897391319275 experiment 0.939075033991879 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39978062 chr17:39978063 synonymous SNV . 0 22 hm5C_associated_SNPs_16896 0 0 1 0 1 FKBP10 chr17:39978069 5'GT 39978069 Upstream 7bp
chr13 111287895 111287895 1 + C A BLCA 111287910 + 111287890 111287930 41 GTGGTCCAGAAAGGAGAGCGCGACATCCTCTCCAACGGCCA GTGGTACAGAAAGGAGAGCGCGACATCCTCTCCAACGGCCA < 41bp 1 0.765763992262069 1 0.535124123096466 experiment 0.468472015475862 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NAXD ENSG00000213995 CDS Human protein_coding chr13:111287910 chr13:111287895 synonymous SNV . 0 6 hm5C_associated_SNPs_16897 0 0 1 0 2 NAXD chr13:111287815 3'AG 111287815 Downstream 81bp
chr13 111287895 111287895 1 + C A BLCA 111287910 + 111287890 111287930 41 GTGGTCCAGAAAGGAGAGCGCGACATCCTCTCCAACGGCCA GTGGTACAGAAAGGAGAGCGCGACATCCTCTCCAACGGCCA < 41bp 1 0.765763992262069 1 0.535124123096466 experiment 0.468472015475862 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NAXD ENSG00000213995 CDS Human protein_coding chr13:111287910 chr13:111287895 synonymous SNV . 0 6 hm5C_associated_SNPs_16897 0 0 1 0 2 NAXD chr13:111287820 3'AG 111287820 Downstream 76bp
chr2 62934344 62934344 1 + G C BLCA 62934334 + 62934314 62934354 41 TTGACTGATCATCATGGCTTCAGTTTGGAAGAGACTGCAGC TTGACTGATCATCATGGCTTCAGTTTGGAACAGACTGCAGC < 41bp 1 0.114925097287137 1 0.0468286275863647 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EHBP1 ENSG00000115504 CDS Human protein_coding chr2:62934334 chr2:62934344 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_16898 0 0 1 0 1 EHBP1 chr2:62934430 5'GT 62934430 Upstream 87bp
chr3 47382156 47382156 1 + G C BLCA 47382146 + 47382126 47382166 41 TCCCTCAGCTCCGTGGAGACCTACTCACCTGAGACGGACAA TCCCTCAGCTCCGTGGAGACCTACTCACCTCAGACGGACAA < 41bp 1 0.333970286770488 1 0.0921139121055603 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47382146 chr3:47382156 nonsynonymous SNV 0.998 1 31 hm5C_associated_SNPs_16899 0 0 1 0 2 KLHL18 chr3:47382062 3'AG 47382062 Downstream 95bp
chr3 47382156 47382156 1 + G C BLCA 47382146 + 47382126 47382166 41 TCCCTCAGCTCCGTGGAGACCTACTCACCTGAGACGGACAA TCCCTCAGCTCCGTGGAGACCTACTCACCTCAGACGGACAA < 41bp 1 0.333970286770488 1 0.0921139121055603 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47382146 chr3:47382156 nonsynonymous SNV 0.998 1 31 hm5C_associated_SNPs_16899 0 0 1 0 2 KLHL18 chr3:47382166 5'GT 47382166 Upstream 11bp
chr3 37583996 37583996 1 + G C BLCA 37583980 + 37583960 37584000 41 GGCCAGATGCCCAGGGTCTACTTTGTGCTGCTGGGAGAGAC GGCCAGATGCCCAGGGTCTACTTTGTGCTGCTGGGACAGAC < 41bp 1 0.294977087419383 1 0.0543371438980103 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37583980 chr3:37583996 nonsynonymous SNV 0.898 1 37 hm5C_associated_SNPs_16901 0 0 0 0 2 ITGA9 chr3:37583916 3'AG 37583916 Downstream 81bp
chr3 37583996 37583996 1 + G C BLCA 37583980 + 37583960 37584000 41 GGCCAGATGCCCAGGGTCTACTTTGTGCTGCTGGGAGAGAC GGCCAGATGCCCAGGGTCTACTTTGTGCTGCTGGGACAGAC < 41bp 1 0.294977087419383 1 0.0543371438980103 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37583980 chr3:37583996 nonsynonymous SNV 0.898 1 37 hm5C_associated_SNPs_16901 0 0 0 0 2 ITGA9 chr3:37584076 5'GT 37584076 Upstream 81bp
chr6 36564702 36564702 1 + G C BLCA 36564715 + 36564695 36564735 41 ATTTGAAGATCCCCGAGATGCAGCTGATGCAGTCCGAGAGC ATTTGAACATCCCCGAGATGCAGCTGATGCAGTCCGAGAGC < 41bp 1 0.766310980861482 1 0.211029767990112 experiment 0.467378038277036 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36564715 chr6:36564702 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_16902 0 0 1 0 1 SRSF3 chr6:36564745 5'GT 36564745 Upstream 44bp
chrX 24073096 24073096 1 + G A BLCA 24073094 + 24073074 24073114 41 TCTTTTGGCAACATGGCGGGCGGAGAAGCTGGAGTGACTCT TCTTTTGGCAACATGGCGGGCGAAGAAGCTGGAGTGACTCT < 41bp 1 0.518609598875443 1 0.482771635055542 experiment 0.962780802249114 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF2S3 ENSG00000130741 CDS Human protein_coding chrX:24073094 chrX:24073096 nonsynonymous SNV 0.255 1 23 hm5C_associated_SNPs_16904 0 0 1 0 1 EIF2S3 chrX:24073154 5'GT 24073154 Upstream 59bp
chr11 64852679 64852679 1 + G A BLCA 64852682 + 64852662 64852702 41 CTGGCCAGCCGAGAGACGACCCGCCTTGTCTGCTATGGTGA CTGGCCAGCCGAGAGACAACCCGCCTTGTCTGCTATGGTGA < 41bp 1 0.29586248073978 1 0.420460283756256 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZFPL1 ENSG00000162300 CDS Human protein_coding chr11:64852682 chr11:64852679 synonymous SNV . 0 18 hm5C_associated_SNPs_16905 0 0 1 0 2 ZFPL1 chr11:64852587 3'AG 64852587 Downstream 93bp
chr11 64852679 64852679 1 + G A BLCA 64852682 + 64852662 64852702 41 CTGGCCAGCCGAGAGACGACCCGCCTTGTCTGCTATGGTGA CTGGCCAGCCGAGAGACAACCCGCCTTGTCTGCTATGGTGA < 41bp 1 0.29586248073978 1 0.420460283756256 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZFPL1 ENSG00000162300 CDS Human protein_coding chr11:64852682 chr11:64852679 synonymous SNV . 0 18 hm5C_associated_SNPs_16905 0 0 1 0 2 ZFPL1 chr11:64852698 5'GT 64852698 Upstream 20bp
chr1 231377135 231377135 1 + C A BLCA 231377115 + 231377095 231377135 41 CCAGACCCCGCCCGGGAAGGCAGCCGCACCATGGAGTCTTC CCAGACCCCGCCCGGGAAGGCAGCCGCACCATGGAGTCTTA < 41bp 1 0.660183503418583 1 0.510588765144348 experiment 0.679632993162833 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231377115 chr1:231377135 nonsynonymous SNV 0.001 0 41 hm5C_associated_SNPs_16906 0 0 1 0 1 GNPAT chr1:231377202 5'GT 231377202 Upstream 68bp
chr7 69583203 69583203 1 + G A BLCA 69583186 + 69583166 69583206 41 AGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA AGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCAGGA < 41bp 1 0.111023582743347 1 0.175625592470169 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69583186 chr7:69583203 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_16907 0 0 1 0 2 AUTS2 chr7:69583118 3'AG 69583118 Downstream 86bp
chr7 69583203 69583203 1 + G A BLCA 69583186 + 69583166 69583206 41 AGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA AGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCAGGA < 41bp 1 0.111023582743347 1 0.175625592470169 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69583186 chr7:69583203 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_16907 0 0 1 0 2 AUTS2 chr7:69583219 5'GT 69583219 Upstream 17bp
chr12 109604795 109604795 1 + G A BLCA 109604784 + 109604764 109604804 41 TCACACGCTTTGGGGGGGATCGGGTCATCGAGAAGGTACAG TCACACGCTTTGGGGGGGATCGGGTCATCGAAAAGGTACAG < 41bp 1 0.520430912309524 1 0.755707025527954 experiment 0.959138175380952 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109604784 chr12:109604795 synonymous SNV . 0 32 hm5C_associated_SNPs_16908 0 0 1 0 1 ACACB chr12:109604798 5'GT 109604798 Upstream 4bp
chr19 17313011 17313011 1 + G C BLCA 17313031 + 17313011 17313051 41 GAGCGTGGCCAGAAGGACACCAACCTGGTCCTCAACCTCTT CAGCGTGGCCAGAAGGACACCAACCTGGTCCTCAACCTCTT < 41bp 1 0.131886342077661 1 0.0650624632835388 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17313031 chr19:17313011 nonsynonymous SNV 0.003 1 1 hm5C_associated_SNPs_16910 0 0 1 0 1 MYO9B chr19:17312939 3'AG 17312939 Downstream 73bp
chr10 115644091 115644091 1 + G A BLCA 115644100 + 115644080 115644120 41 GAGCAAAAGGAGAACAACAACCCATTAGTTCCCCTTGGGAT GAGCAAAAGGAAAACAACAACCCATTAGTTCCCCTTGGGAT < 41bp 1 0.196902988977552 1 0.215644210577011 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115644100 chr10:115644091 nonsynonymous SNV 0.620 0 12 hm5C_associated_SNPs_16911 0 0 1 0 1 NHLRC2 chr10:115644139 5'GT 115644139 Upstream 49bp
chr19 34868416 34868416 1 + G C BLCA 34868408 + 34868388 34868428 41 CATCTTCGCCCCTGTGCCAGCGTGTCCGGAGCGGTGACTGG CATCTTCGCCCCTGTGCCAGCGTGTCCGCAGCGGTGACTGG < 41bp 1 0.211468235673606 1 0.450385481119156 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868408 chr19:34868416 synonymous SNV . 0 29 hm5C_associated_SNPs_16913 0 0 1 0 1 GPI chr19:34868491 5'GT 34868491 Upstream 76bp
chr19 34868416 34868416 1 + G C BLCA 34868413 + 34868393 34868433 41 TCGCCCCTGTGCCAGCGTGTCCGGAGCGGTGACTGGAAGGG TCGCCCCTGTGCCAGCGTGTCCGCAGCGGTGACTGGAAGGG < 41bp 1 0.541858409218026 1 0.222105771303177 experiment 0.916283181563949 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868413 chr19:34868416 synonymous SNV . 0 24 hm5C_associated_SNPs_16914 0 0 1 0 1 GPI chr19:34868491 5'GT 34868491 Upstream 76bp
chr14 68042625 68042625 1 + G C BLCA 68042632 + 68042612 68042652 41 GACTATGAGGCTGGAGGAACCAGACGGTTGCTTTCCTCCCA GACTATGAGGCTGCAGGAACCAGACGGTTGCTTTCCTCCCA < 41bp 1 0.588766816981337 1 0.786438226699829 experiment 0.822466366037327 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68042632 chr14:68042625 nonsynonymous SNV 0.972 0 14 hm5C_associated_SNPs_16915 0 0 0 0 2 PLEKHH1 chr14:68042540 3'AG 68042540 Downstream 86bp
chr14 68042625 68042625 1 + G C BLCA 68042632 + 68042612 68042652 41 GACTATGAGGCTGGAGGAACCAGACGGTTGCTTTCCTCCCA GACTATGAGGCTGCAGGAACCAGACGGTTGCTTTCCTCCCA < 41bp 1 0.588766816981337 1 0.786438226699829 experiment 0.822466366037327 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68042632 chr14:68042625 nonsynonymous SNV 0.972 0 14 hm5C_associated_SNPs_16915 0 0 0 0 2 PLEKHH1 chr14:68042722 5'GT 68042722 Upstream 98bp
chr7 150761792 150761792 1 + G A BLCA 150761806 + 150761786 150761826 41 GCCAGCGAGGCTGAGGGGGCCCGGGCTCTCACTCAGCCGTC GCCAGCAAGGCTGAGGGGGCCCGGGCTCTCACTCAGCCGTC < 41bp 1 0.597178286413091 1 0.490647196769714 experiment 0.805643427173818 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150761806 chr7:150761792 nonsynonymous SNV 0.030 1 7 hm5C_associated_SNPs_16916 0 0 1 0 1 SLC4A2 chr7:150761854 5'GT 150761854 Upstream 63bp
chr6 80741194 80741194 1 + C G BLCA 80741213 + 80741193 80741233 41 TCTTCTTCAGCAAATGAATGCATTTCGGTTAAAGGAAGAAT TGTTCTTCAGCAAATGAATGCATTTCGGTTAAAGGAAGAAT < 41bp 1 0.0240543793760812 1 0.11857658624649 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TTK ENSG00000112742 CDS Human protein_coding chr6:80741213 chr6:80741194 nonsynonymous SNV 0.076 3 2 hm5C_associated_SNPs_16917 0 0 1 0 2 TTK chr6:80741184 3'AG 80741184 Downstream 11bp
chr6 80741194 80741194 1 + C G BLCA 80741213 + 80741193 80741233 41 TCTTCTTCAGCAAATGAATGCATTTCGGTTAAAGGAAGAAT TGTTCTTCAGCAAATGAATGCATTTCGGTTAAAGGAAGAAT < 41bp 1 0.0240543793760812 1 0.11857658624649 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TTK ENSG00000112742 CDS Human protein_coding chr6:80741213 chr6:80741194 nonsynonymous SNV 0.076 3 2 hm5C_associated_SNPs_16917 0 0 1 0 2 TTK chr6:80741276 5'GT 80741276 Upstream 83bp
chr1 145509201 145509201 1 + G C BLCA 145509191 + 145509171 145509211 41 GCCGAAGACGCAGCAGAAGTCCAGACCGGAGACGTCGCTGA GCCGAAGACGCAGCAGAAGTCCAGACCGGACACGTCGCTGA < 41bp 1 0.376230144296306 1 0.389895349740982 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM8A ENSG00000131795 CDS Human other chr1:145509191 chr1:145509201 nonsynonymous SNV . 0 31 hm5C_associated_SNPs_16918 0 0 1 0 1 RBM8A chr1:145509166 3'AG 145509166 Downstream 36bp
chr1 145509201 145509201 1 + G C BLCA 145509206 + 145509186 145509226 41 GAAGTCCAGACCGGAGACGTCGCTGACAGGTCCTCTGTTGT GAAGTCCAGACCGGACACGTCGCTGACAGGTCCTCTGTTGT < 41bp 1 0.162758147525382 1 0.156719475984573 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM8A ENSG00000131795 CDS Human other chr1:145509206 chr1:145509201 nonsynonymous SNV . 0 16 hm5C_associated_SNPs_16919 0 0 1 0 1 RBM8A chr1:145509166 3'AG 145509166 Downstream 36bp
chr17 79408925 79408925 1 + G A BLCA 79408935 + 79408915 79408955 41 CTTCCCCAGCGTGGCCCGGGCCGCCCCTGCCCACCCCATGG CTTCCCCAGCATGGCCCGGGCCGCCCCTGCCCACCCCATGG < 41bp 1 0.100989807051459 1 0.106438338756561 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79408935 chr17:79408925 nonsynonymous SNV 0.436 0 11 hm5C_associated_SNPs_16920 0 0 1 0 1 BAHCC1 chr17:79408857 3'AG 79408857 Downstream 69bp
chr5 43649344 43649344 1 + C G BLCA 43649348 + 43649328 43649368 41 TGGCATTGTGGGGTATCATACCGTCTGGGGAGTGACCCCTG TGGCATTGTGGGGTATGATACCGTCTGGGGAGTGACCCCTG < 41bp 1 0.257307144135807 1 0.200734555721283 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43649348 chr5:43649344 nonsynonymous SNV 0.290 3 17 hm5C_associated_SNPs_16922 0 0 1 0 2 NNT chr5:43649249 3'AG 43649249 Downstream 96bp
chr5 43649344 43649344 1 + C G BLCA 43649348 + 43649328 43649368 41 TGGCATTGTGGGGTATCATACCGTCTGGGGAGTGACCCCTG TGGCATTGTGGGGTATGATACCGTCTGGGGAGTGACCCCTG < 41bp 1 0.257307144135807 1 0.200734555721283 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43649348 chr5:43649344 nonsynonymous SNV 0.290 3 17 hm5C_associated_SNPs_16922 0 0 1 0 2 NNT chr5:43649410 5'GT 43649410 Upstream 67bp
chr20 3781979 3781979 1 + G C BLCA 3781963 + 3781943 3781983 41 CCCCTGGCCCTAGGTCGCTTCTCTCTGACCCCTGCAGAGGG CCCCTGGCCCTAGGTCGCTTCTCTCTGACCCCTGCACAGGG < 41bp 1 0.192163679300658 1 0.713423192501068 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC25B ENSG00000101224 CDS Human protein_coding chr20:3781963 chr20:3781979 nonsynonymous SNV 0.000 0 37 hm5C_associated_SNPs_16923 0 0 1 0 1 CDC25B chr20:3782035 5'GT 3782035 Upstream 57bp
chr7 100201601 100201601 1 + T C BLCA 100201610 + 100201590 100201630 41 GGGCCAGACTGTGTCCCTCTCATTCCGAGTCTTCGACCTGG GGGCCAGACTGCGTCCCTCTCATTCCGAGTCTTCGACCTGG < 41bp 1 0.119360646102732 1 0.0332517325878143 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100201610 chr7:100201601 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_16925 0 0 1 0 1 PCOLCE chr7:100201582 3'AG 100201582 Downstream 20bp
chr19 45975945 45975945 1 + G A BLCA 45975941 + 45975921 45975961 41 AGATCCCCTACGAAGAGGGGCCCGGGCCGGGCCCGCTGGCG AGATCCCCTACGAAGAGGGGCCCGAGCCGGGCCCGCTGGCG < 41bp 1 0.534922077213552 1 0.376892060041428 experiment 0.930155845572895 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975941 chr19:45975945 nonsynonymous SNV 0.795 3 25 hm5C_associated_SNPs_16927 0 0 0 0 1 FOSB chr19:45975964 5'GT 45975964 Upstream 20bp
chr19 45975945 45975945 1 + G A BLCA 45975942 + 45975922 45975962 41 GATCCCCTACGAAGAGGGGCCCGGGCCGGGCCCGCTGGCGG GATCCCCTACGAAGAGGGGCCCGAGCCGGGCCCGCTGGCGG < 41bp 1 0.410528526921007 1 0.460716515779495 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975942 chr19:45975945 nonsynonymous SNV 0.795 3 24 hm5C_associated_SNPs_16928 0 0 0 0 1 FOSB chr19:45975964 5'GT 45975964 Upstream 20bp
chr19 45975945 45975945 1 + G A BLCA 45975943 + 45975923 45975963 41 ATCCCCTACGAAGAGGGGCCCGGGCCGGGCCCGCTGGCGGA ATCCCCTACGAAGAGGGGCCCGAGCCGGGCCCGCTGGCGGA < 41bp 1 0.581732911576075 1 0.723929345607758 experiment 0.83653417684785 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975943 chr19:45975945 nonsynonymous SNV 0.795 3 23 hm5C_associated_SNPs_16929 0 0 0 0 1 FOSB chr19:45975964 5'GT 45975964 Upstream 20bp
chr19 45975945 45975945 1 + G A BLCA 45975952 + 45975932 45975972 41 GAAGAGGGGCCCGGGCCGGGCCCGCTGGCGGAGGTGAGAGA GAAGAGGGGCCCGAGCCGGGCCCGCTGGCGGAGGTGAGAGA < 41bp 1 0.338985447059248 1 0.152392119169235 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975952 chr19:45975945 nonsynonymous SNV 0.795 3 14 hm5C_associated_SNPs_16930 0 0 0 0 1 FOSB chr19:45975964 5'GT 45975964 Upstream 20bp
chr19 45975945 45975945 1 + G A BLCA 45975953 + 45975933 45975973 41 AAGAGGGGCCCGGGCCGGGCCCGCTGGCGGAGGTGAGAGAT AAGAGGGGCCCGAGCCGGGCCCGCTGGCGGAGGTGAGAGAT < 41bp 1 0.354911884301786 1 0.411852866411209 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975953 chr19:45975945 nonsynonymous SNV 0.795 3 13 hm5C_associated_SNPs_16931 0 0 0 0 1 FOSB chr19:45975964 5'GT 45975964 Upstream 20bp
chr19 45975945 45975945 1 + G A BLCA 45975954 + 45975934 45975974 41 AGAGGGGCCCGGGCCGGGCCCGCTGGCGGAGGTGAGAGATT AGAGGGGCCCGAGCCGGGCCCGCTGGCGGAGGTGAGAGATT < 41bp 1 0.51518006488004 1 0.282200753688812 experiment 0.96963987023992 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975954 chr19:45975945 nonsynonymous SNV 0.795 3 12 hm5C_associated_SNPs_16932 0 0 0 0 1 FOSB chr19:45975964 5'GT 45975964 Upstream 20bp
chr3 51981796 51981796 1 + G A BLCA 51981779 + 51981759 51981799 41 TTGGCATGAAGTGTGGGGCCCACCATGTCGGCTACATGTTC TTGGCATGAAGTGTGGGGCCCACCATGTCGGCTACATATTC < 41bp 1 0.605317041318292 1 0.143372297286987 experiment 0.789365917363416 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PARP3 ENSG00000041880 CDS Human protein_coding chr3:51981779 chr3:51981796 nonsynonymous SNV 0.998 2 38 hm5C_associated_SNPs_16933 0 0 0 0 1 PARP3 chr3:51981756 3'AG 51981756 Downstream 41bp
chr19 10402264 10402264 1 + C T BLCA 10402280 + 10402260 10402300 41 CGTGCGAGCCTCACGCTGACCCTGCTGCGGGGCGCCCAGGA CGTGTGAGCCTCACGCTGACCCTGCTGCGGGGCGCCCAGGA < 41bp 1 0.186967830548423 1 0.346922367811203 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ICAM5 ENSG00000105376 CDS Human protein_coding chr19:10402280 chr19:10402264 nonsynonymous SNV 0.163 0 5 hm5C_associated_SNPs_16936 0 0 1 0 1 ICAM5 chr19:10402165 3'AG 10402165 Downstream 100bp
chr19 10402264 10402264 1 + C T BLCA 10402281 + 10402261 10402301 41 GTGCGAGCCTCACGCTGACCCTGCTGCGGGGCGCCCAGGAG GTGTGAGCCTCACGCTGACCCTGCTGCGGGGCGCCCAGGAG < 41bp 1 0.649783016449414 1 0.684191763401031 experiment 0.700433967101172 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ICAM5 ENSG00000105376 CDS Human protein_coding chr19:10402281 chr19:10402264 nonsynonymous SNV 0.163 0 4 hm5C_associated_SNPs_16937 0 0 1 0 1 ICAM5 chr19:10402165 3'AG 10402165 Downstream 100bp
chr19 35739844 35739844 1 + C T BLCA 35739838 + 35739818 35739858 41 GGAAGTGGGAAGGGGAGGAGCGTGCACCCCTCCTGGCCTTG GGAAGTGGGAAGGGGAGGAGCGTGCATCCCTCCTGGCCTTG < 41bp 1 0.474310676240025 1 0.443328320980072 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35739838 chr19:35739844 synonymous SNV . 0 27 hm5C_associated_SNPs_16943 0 0 0 0 1 LSR chr19:35739933 5'GT 35739933 Upstream 90bp
chr1 44128690 44128690 1 + T C BLCA 44128686 + 44128666 44128706 41 CTTTGGCATGTGGAAGACATCCTTTGCTTGGCACACTGAAG CTTTGGCATGTGGAAGACATCCTTCGCTTGGCACACTGAAG < 41bp 1 0.0446852974231482 1 0.0826015174388885 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KDM4A ENSG00000066135 CDS Human protein_coding chr1:44128686 chr1:44128690 synonymous SNV . 0 25 hm5C_associated_SNPs_16946 0 0 1 0 1 KDM4A chr1:44128758 5'GT 44128758 Upstream 69bp
chr1 109446807 109446807 1 + C G BLCA 109446818 + 109446798 109446838 41 CAAATGGTTCTTGGTCTGAGCTACAGCACAAATAACTCCAT CAAATGGTTGTTGGTCTGAGCTACAGCACAAATAACTCCAT < 41bp 1 0.607538260058799 1 0.408477783203125 experiment 0.784923479882402 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM2 ENSG00000121957 CDS Human protein_coding chr1:109446818 chr1:109446807 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_16947 0 0 1 0 2 GPSM2 chr1:109446747 3'AG 109446747 Downstream 61bp
chr1 109446807 109446807 1 + C G BLCA 109446818 + 109446798 109446838 41 CAAATGGTTCTTGGTCTGAGCTACAGCACAAATAACTCCAT CAAATGGTTGTTGGTCTGAGCTACAGCACAAATAACTCCAT < 41bp 1 0.607538260058799 1 0.408477783203125 experiment 0.784923479882402 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM2 ENSG00000121957 CDS Human protein_coding chr1:109446818 chr1:109446807 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_16947 0 0 1 0 2 GPSM2 chr1:109446876 5'GT 109446876 Upstream 70bp
chr16 28950000 28950000 1 + C A BLCA 28950001 + 28949981 28950021 41 TCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAG TCCCCCGCCCAAGCAGGGTACCAGTCCTATGAGGATATGAG < 41bp 1 0.0470523886194289 1 0.0513176023960114 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950001 chr16:28950000 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_16948 0 0 0 0 3 CD19 chr16:28949994 3'AG 28949994 Downstream 7bp
chr16 28950000 28950000 1 + C A BLCA 28950001 + 28949981 28950021 41 TCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAG TCCCCCGCCCAAGCAGGGTACCAGTCCTATGAGGATATGAG < 41bp 1 0.0470523886194289 1 0.0513176023960114 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950001 chr16:28950000 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_16948 0 0 0 0 3 CD19 chr16:28949997 3'AG 28949997 Downstream 4bp
chr16 28950000 28950000 1 + C A BLCA 28950001 + 28949981 28950021 41 TCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAG TCCCCCGCCCAAGCAGGGTACCAGTCCTATGAGGATATGAG < 41bp 1 0.0470523886194289 1 0.0513176023960114 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950001 chr16:28950000 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_16948 0 0 0 0 3 CD19 chr16:28950089 5'GT 28950089 Upstream 90bp
chr16 28950000 28950000 1 + C A BLCA 28950002 + 28949982 28950022 41 CCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAGA CCCCCGCCCAAGCAGGGTACCAGTCCTATGAGGATATGAGA < 41bp 1 0.0795569424025034 1 0.136116027832031 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950002 chr16:28950000 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_16949 0 0 0 0 3 CD19 chr16:28949994 3'AG 28949994 Downstream 7bp
chr16 28950000 28950000 1 + C A BLCA 28950002 + 28949982 28950022 41 CCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAGA CCCCCGCCCAAGCAGGGTACCAGTCCTATGAGGATATGAGA < 41bp 1 0.0795569424025034 1 0.136116027832031 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950002 chr16:28950000 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_16949 0 0 0 0 3 CD19 chr16:28949997 3'AG 28949997 Downstream 4bp
chr16 28950000 28950000 1 + C A BLCA 28950002 + 28949982 28950022 41 CCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAGA CCCCCGCCCAAGCAGGGTACCAGTCCTATGAGGATATGAGA < 41bp 1 0.0795569424025034 1 0.136116027832031 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950002 chr16:28950000 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_16949 0 0 0 0 3 CD19 chr16:28950089 5'GT 28950089 Upstream 90bp
chr19 42406712 42406712 1 + G A BLCA 42406702 + 42406682 42406722 41 GTTTGATGGTGCTGAGGGCTCCTGGTTCCAGAAAATCTCCT GTTTGATGGTGCTGAGGGCTCCTGGTTCCAAAAAATCTCCT < 41bp 1 0.324256552490592 1 0.361678123474121 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42406702 chr19:42406712 synonymous SNV . 0 31 hm5C_associated_SNPs_16950 0 0 1 0 2 ARHGEF1 chr19:42406683 3'AG 42406683 Downstream 30bp
chr19 42406712 42406712 1 + G A BLCA 42406702 + 42406682 42406722 41 GTTTGATGGTGCTGAGGGCTCCTGGTTCCAGAAAATCTCCT GTTTGATGGTGCTGAGGGCTCCTGGTTCCAAAAAATCTCCT < 41bp 1 0.324256552490592 1 0.361678123474121 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42406702 chr19:42406712 synonymous SNV . 0 31 hm5C_associated_SNPs_16950 0 0 1 0 2 ARHGEF1 chr19:42406808 5'GT 42406808 Upstream 97bp
chr5 33463913 33463913 1 + G A BLCA 33463905 + 33463885 33463925 41 AATGGTAGTTCCAGTGGGACCAACCTGTGATGAATATGCCC AATGGTAGTTCCAGTGGGACCAACCTGTAATGAATATGCCC < 41bp 1 0.308049833895081 1 0.349730789661407 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33463905 chr5:33463913 nonsynonymous SNV 0.999 2 29 hm5C_associated_SNPs_16951 0 0 1 0 2 TARS chr5:33463858 3'AG 33463858 Downstream 56bp
chr5 33463913 33463913 1 + G A BLCA 33463905 + 33463885 33463925 41 AATGGTAGTTCCAGTGGGACCAACCTGTGATGAATATGCCC AATGGTAGTTCCAGTGGGACCAACCTGTAATGAATATGCCC < 41bp 1 0.308049833895081 1 0.349730789661407 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33463905 chr5:33463913 nonsynonymous SNV 0.999 2 29 hm5C_associated_SNPs_16951 0 0 1 0 2 TARS chr5:33463930 5'GT 33463930 Upstream 18bp
chr20 30898654 30898654 1 + C A BLCA 30898670 + 30898650 30898690 41 AATTCCAGGAAGAGATTGCTCGGCTCAAGGCCCAGCTGGAA AATTACAGGAAGAGATTGCTCGGCTCAAGGCCCAGCTGGAA < 41bp 1 0.660689437521751 1 0.707834303379059 experiment 0.678621124956498 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898670 chr20:30898654 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_16952 0 0 1 0 1 KIF3B chr20:30898703 5'GT 30898703 Upstream 50bp
chr11 2608853 2608853 1 + C A BLCA 2608838 + 2608818 2608858 41 GCTGCCGAGAACCCCGACTCCTCCACCTGGAAGATCTACAT GCTGCCGAGAACCCCGACTCCTCCACCTGGAAGATATACAT < 41bp 1 0.578525584396362 1 0.916970014572144 experiment 0.842948831207276 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2608838 chr11:2608853 synonymous SNV . 0 36 hm5C_associated_SNPs_16953 0 0 0 0 2 KCNQ1 chr11:2608800 3'AG 2608800 Downstream 54bp
chr11 2608853 2608853 1 + C A BLCA 2608838 + 2608818 2608858 41 GCTGCCGAGAACCCCGACTCCTCCACCTGGAAGATCTACAT GCTGCCGAGAACCCCGACTCCTCCACCTGGAAGATATACAT < 41bp 1 0.578525584396362 1 0.916970014572144 experiment 0.842948831207276 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2608838 chr11:2608853 synonymous SNV . 0 36 hm5C_associated_SNPs_16953 0 0 0 0 2 KCNQ1 chr11:2608922 5'GT 2608922 Upstream 70bp
chr10 17277378 17277378 1 + G A BLCA 17277369 + 17277349 17277389 41 TTGCCACCTACAGGAAGCTGCTGGAAGGCGAGGAGAGCAGG TTGCCACCTACAGGAAGCTGCTGGAAGGCAAGGAGAGCAGG < 41bp 1 0.70650357475124 1 0.55744481086731 experiment 0.58699285049752 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277369 chr10:17277378 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_16955 0 0 1 1 1 VIM chr10:17277388 5'GT 17277388 Upstream 11bp
chr10 17277378 17277378 1 + G A BLCA 17277386 + 17277366 17277406 41 CTGCTGGAAGGCGAGGAGAGCAGGTAGGGAACTCAGACTTG CTGCTGGAAGGCAAGGAGAGCAGGTAGGGAACTCAGACTTG < 41bp 1 0.586591764762412 1 0.556146442890167 experiment 0.826816470475177 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277386 chr10:17277378 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_16956 0 0 1 1 1 VIM chr10:17277388 5'GT 17277388 Upstream 11bp
chr19 42797830 42797830 1 + C G BLCA 42797813 + 42797793 42797833 41 GCCTGGAGAATCGTGGGGAGCCTCCCACTCCTCCCAGCCCG GCCTGGAGAATCGTGGGGAGCCTCCCACTCCTCCCAGGCCG < 41bp 1 0.0419861705173505 1 0.0279693007469177 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42797813 chr19:42797830 nonsynonymous SNV 0.975 1 38 hm5C_associated_SNPs_16957 0 0 0 0 1 CIC chr19:42797744 3'AG 42797744 Downstream 87bp
chr19 42797830 42797830 1 + C G BLCA 42797838 + 42797818 42797858 41 CACTCCTCCCAGCCCGGCCCCAGCTCCAGCTGTAGCCCCTG CACTCCTCCCAGGCCGGCCCCAGCTCCAGCTGTAGCCCCTG < 41bp 1 0.301996359733196 1 0.120302081108093 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CIC ENSG00000079432 CDS Human protein_coding chr19:42797838 chr19:42797830 nonsynonymous SNV 0.975 1 13 hm5C_associated_SNPs_16958 0 0 0 0 1 CIC chr19:42797744 3'AG 42797744 Downstream 87bp
chr19 45490649 45490649 1 + G A BLCA 45490656 + 45490636 45490676 41 TGATGAGTTGTACGAGCAGTCAGATGAGGAGCAGGACTCGG TGATGAGTTGTACAAGCAGTCAGATGAGGAGCAGGACTCGG < 41bp 1 0.631177281421354 1 0.531290292739868 experiment 0.737645437157291 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45490656 chr19:45490649 nonsynonymous SNV 0.677 2 14 hm5C_associated_SNPs_16959 0 0 1 0 1 CLPTM1 chr19:45490681 5'GT 45490681 Upstream 33bp
chr7 21934388 21934388 1 + C T BLCA 21934397 + 21934377 21934417 41 TTCGGGAAATACGTATATCACTTGAACAACTGGACCTTAGT TTCGGGAAATATGTATATCACTTGAACAACTGGACCTTAGT < 41bp 1 0.187411265976681 1 0.352391570806503 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21934397 chr7:21934388 nonsynonymous SNV 0.687 4 12 hm5C_associated_SNPs_16960 0 0 0 0 1 DNAH11 chr7:21934423 5'GT 21934423 Upstream 36bp
chr13 48832951 48832951 1 + C G BLCA 48832941 + 48832921 48832961 41 TTCTGAATGTAGGCTGGAACCTATTTGCCTCAGTCCTATCT TTCTGAATGTAGGCTGGAACCTATTTGCCTGAGTCCTATCT < 41bp 1 0.458225769417688 1 0.0257116258144379 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITM2B ENSG00000136156 CDS Human protein_coding chr13:48832941 chr13:48832951 nonsynonymous SNV 0.999 3 31 hm5C_associated_SNPs_16961 0 0 1 0 1 ITM2B chr13:48832933 3'AG 48832933 Downstream 19bp
chr17 73695901 73695901 1 + G A BLCA 73695888 + 73695868 73695908 41 TTTTCTGAAAGAGTTCGGAACATGTCGCCTGATGAAATCAA TTTTCTGAAAGAGTTCGGAACATGTCGCCTGATAAAATCAA < 41bp 1 0.143172913284768 1 0.169961422681808 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695888 chr17:73695901 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_16962 0 0 1 0 2 SAP30BP chr17:73695863 3'AG 73695863 Downstream 39bp
chr17 73695901 73695901 1 + G A BLCA 73695888 + 73695868 73695908 41 TTTTCTGAAAGAGTTCGGAACATGTCGCCTGATGAAATCAA TTTTCTGAAAGAGTTCGGAACATGTCGCCTGATAAAATCAA < 41bp 1 0.143172913284768 1 0.169961422681808 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695888 chr17:73695901 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_16962 0 0 1 0 2 SAP30BP chr17:73695951 5'GT 73695951 Upstream 51bp
chr17 73695901 73695901 1 + G A BLCA 73695893 + 73695873 73695913 41 TGAAAGAGTTCGGAACATGTCGCCTGATGAAATCAAGATCC TGAAAGAGTTCGGAACATGTCGCCTGATAAAATCAAGATCC < 41bp 1 0.707375969240106 1 0.300473660230637 experiment 0.585248061519787 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695893 chr17:73695901 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_16963 0 0 1 0 2 SAP30BP chr17:73695863 3'AG 73695863 Downstream 39bp
chr17 73695901 73695901 1 + G A BLCA 73695893 + 73695873 73695913 41 TGAAAGAGTTCGGAACATGTCGCCTGATGAAATCAAGATCC TGAAAGAGTTCGGAACATGTCGCCTGATAAAATCAAGATCC < 41bp 1 0.707375969240106 1 0.300473660230637 experiment 0.585248061519787 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695893 chr17:73695901 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_16963 0 0 1 0 2 SAP30BP chr17:73695951 5'GT 73695951 Upstream 51bp
chr17 73695901 73695901 1 + G A BLCA 73695896 + 73695876 73695916 41 AAGAGTTCGGAACATGTCGCCTGATGAAATCAAGATCCCGC AAGAGTTCGGAACATGTCGCCTGATAAAATCAAGATCCCGC < 41bp 1 0.261232353133683 1 0.289749473333359 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695896 chr17:73695901 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_16964 0 0 1 0 2 SAP30BP chr17:73695863 3'AG 73695863 Downstream 39bp
chr17 73695901 73695901 1 + G A BLCA 73695896 + 73695876 73695916 41 AAGAGTTCGGAACATGTCGCCTGATGAAATCAAGATCCCGC AAGAGTTCGGAACATGTCGCCTGATAAAATCAAGATCCCGC < 41bp 1 0.261232353133683 1 0.289749473333359 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695896 chr17:73695901 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_16964 0 0 1 0 2 SAP30BP chr17:73695951 5'GT 73695951 Upstream 51bp
chr9 131386709 131386709 1 + G A BLCA 131386723 + 131386703 131386743 41 CTGGATGAGAACTCGGCCTTCCTTCAGTTCAACTGGAAGGC CTGGATAAGAACTCGGCCTTCCTTCAGTTCAACTGGAAGGC < 41bp 1 0.0157705002557943 1 0.0562135577201843 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131386723 chr9:131386709 nonsynonymous SNV 0.974 2 7 hm5C_associated_SNPs_16965 0 0 1 0 1 SPTAN1 chr9:131386766 5'GT 131386766 Upstream 58bp
chr9 36204091 36204091 1 + G C BLCA 36204107 + 36204087 36204127 41 AGCAGAGTGGAAAGAAAAGGCAATAAAGGAGCTAGAAGAAT AGCACAGTGGAAAGAAAAGGCAATAAAGGAGCTAGAAGAAT < 41bp 1 0.368306188072634 1 0.202040106058121 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLTA ENSG00000122705 CDS Human protein_coding chr9:36204107 chr9:36204091 nonsynonymous SNV 0.999 4 5 hm5C_associated_SNPs_16966 0 0 1 1 2 CLTA chr9:36204065 3'AG 36204065 Downstream 27bp
chr9 36204091 36204091 1 + G C BLCA 36204107 + 36204087 36204127 41 AGCAGAGTGGAAAGAAAAGGCAATAAAGGAGCTAGAAGAAT AGCACAGTGGAAAGAAAAGGCAATAAAGGAGCTAGAAGAAT < 41bp 1 0.368306188072634 1 0.202040106058121 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLTA ENSG00000122705 CDS Human protein_coding chr9:36204107 chr9:36204091 nonsynonymous SNV 0.999 4 5 hm5C_associated_SNPs_16966 0 0 1 1 2 CLTA chr9:36204176 5'GT 36204176 Upstream 86bp
chr22 41923373 41923373 1 + C T BLCA 41923388 + 41923368 41923408 41 AGCCTCGCCACCTTGGGGGCCGGGCCATCATCACCAAGAGC AGCCTTGCCACCTTGGGGGCCGGGCCATCATCACCAAGAGC < 41bp 1 0.272656086677968 1 0.46632319688797 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41923388 chr22:41923373 nonsynonymous SNV 0.994 4 6 hm5C_associated_SNPs_16967 0 0 1 0 2 ACO2 chr22:41923292 3'AG 41923292 Downstream 82bp
chr22 41923373 41923373 1 + C T BLCA 41923388 + 41923368 41923408 41 AGCCTCGCCACCTTGGGGGCCGGGCCATCATCACCAAGAGC AGCCTTGCCACCTTGGGGGCCGGGCCATCATCACCAAGAGC < 41bp 1 0.272656086677968 1 0.46632319688797 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41923388 chr22:41923373 nonsynonymous SNV 0.994 4 6 hm5C_associated_SNPs_16967 0 0 1 0 2 ACO2 chr22:41923424 5'GT 41923424 Upstream 52bp
chr17 70119082 70119082 1 + G A BLCA 70119073 + 70119053 70119093 41 GCCGACTCGCCACACTCCTCCTCCGGCATGAGCGAGGTGCA GCCGACTCGCCACACTCCTCCTCCGGCATAAGCGAGGTGCA < 41bp 1 0.627699070119316 1 0.782967209815979 experiment 0.744601859761369 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SOX9 ENSG00000125398 CDS Human protein_coding chr17:70119073 chr17:70119082 nonsynonymous SNV 0.997 2 30 hm5C_associated_SNPs_16969 0 0 1 0 1 SOX9 chr17:70119113 5'GT 70119113 Upstream 32bp
chr4 54257236 54257236 1 + G T BLCA 54257222 + 54257202 54257242 41 TATGGGTTTAATGAAGATACCTGGAAAGCTTACTGTGAAAA TATGGGTTTAATGAAGATACCTGGAAAGCTTACTTTGAAAA < 41bp 1 0.719454625316874 1 0.349318563938141 experiment 0.561090749366253 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FIP1L1 ENSG00000145216 CDS Human protein_coding chr4:54257222 chr4:54257236 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_16971 0 0 1 0 2 FIP1L1 chr4:54257176 3'AG 54257176 Downstream 61bp
chr4 54257236 54257236 1 + G T BLCA 54257222 + 54257202 54257242 41 TATGGGTTTAATGAAGATACCTGGAAAGCTTACTGTGAAAA TATGGGTTTAATGAAGATACCTGGAAAGCTTACTTTGAAAA < 41bp 1 0.719454625316874 1 0.349318563938141 experiment 0.561090749366253 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FIP1L1 ENSG00000145216 CDS Human protein_coding chr4:54257222 chr4:54257236 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_16971 0 0 1 0 2 FIP1L1 chr4:54257306 5'GT 54257306 Upstream 71bp
chr17 73750888 73750888 1 + C A BLCA 73750868 + 73750848 73750888 41 ACCACACTGCCCAGGGACTACTCCACCCTCACCTCCGTCTC ACCACACTGCCCAGGGACTACTCCACCCTCACCTCCGTCTA < 41bp 1 0.665762934162715 1 0.831242382526398 experiment 0.668474131674569 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73750868 chr17:73750888 nonsynonymous SNV 0.985 3 41 hm5C_associated_SNPs_16973 0 0 0 0 1 ITGB4 chr17:73750896 5'GT 73750896 Upstream 9bp
chr8 143782008 143782008 1 + G C BLCA 143782018 + 143781998 143782038 41 ACGCCAACCTGACTGCGAGACAACGAGATCCAGAGGACTCC ACGCCAACCTCACTGCGAGACAACGAGATCCAGAGGACTCC < 41bp 1 0.635070030463645 1 0.0983320474624634 experiment 0.729859939072711 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LY6K ENSG00000160886 CDS Human protein_coding chr8:143782018 chr8:143782008 synonymous SNV . 0 11 hm5C_associated_SNPs_16975 0 0 1 0 1 LY6K chr8:143782048 5'GT 143782048 Upstream 41bp
chr17 66033495 66033495 1 + G C BLCA 66033483 + 66033463 66033503 41 CTTTTCTCAAGGAAATGAGGCGTCGCAGAATAGAGGTCAAT CTTTTCTCAAGGAAATGAGGCGTCGCAGAATACAGGTCAAT < 41bp 1 0.154894726175384 1 0.0847117602825165 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033483 chr17:66033495 nonsynonymous SNV 0.699 3 33 hm5C_associated_SNPs_16976 0 0 1 0 1 KPNA2 chr17:66033474 3'AG 66033474 Downstream 22bp
chr17 66033495 66033495 1 + G C BLCA 66033486 + 66033466 66033506 41 TTCTCAAGGAAATGAGGCGTCGCAGAATAGAGGTCAATGTG TTCTCAAGGAAATGAGGCGTCGCAGAATACAGGTCAATGTG < 41bp 1 0.701108457232129 1 0.190320909023285 experiment 0.597783085535741 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033486 chr17:66033495 nonsynonymous SNV 0.699 3 30 hm5C_associated_SNPs_16977 0 0 1 0 1 KPNA2 chr17:66033474 3'AG 66033474 Downstream 22bp
chr17 66033495 66033495 1 + G C BLCA 66033488 + 66033468 66033508 41 CTCAAGGAAATGAGGCGTCGCAGAATAGAGGTCAATGTGGA CTCAAGGAAATGAGGCGTCGCAGAATACAGGTCAATGTGGA < 41bp 1 0.711244204456015 1 0.736330091953278 experiment 0.57751159108797 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033488 chr17:66033495 nonsynonymous SNV 0.699 3 28 hm5C_associated_SNPs_16978 0 0 1 0 1 KPNA2 chr17:66033474 3'AG 66033474 Downstream 22bp
chr17 66033495 66033495 1 + G C BLCA 66033510 + 66033490 66033530 41 GAATAGAGGTCAATGTGGAGCTGAGGAAAGCTAAGAAGGAT GAATACAGGTCAATGTGGAGCTGAGGAAAGCTAAGAAGGAT < 41bp 1 0.582591724021547 1 0.447741091251373 experiment 0.834816551956906 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033510 chr17:66033495 nonsynonymous SNV 0.699 3 6 hm5C_associated_SNPs_16979 0 0 1 0 1 KPNA2 chr17:66033474 3'AG 66033474 Downstream 22bp
chr5 14482837 14482837 1 + G C BLCA 14482854 + 14482834 14482874 41 AAAGAAGGGCTTCTCCATGCCGGGATTCCTGTTTAAGAACA AAACAAGGGCTTCTCCATGCCGGGATTCCTGTTTAAGAACA < 41bp 1 0.568173311642359 1 0.652683675289154 experiment 0.863653376715282 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14482854 chr5:14482837 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_16980 0 0 1 0 1 TRIO chr5:14482882 5'GT 14482882 Upstream 46bp
chr7 150737372 150737372 1 + C T BLCA 150737364 + 150737344 150737384 41 TTTTCTGACAGGTCCATGGCCAACCTCTCTGTCCTGTTTGG TTTTCTGACAGGTCCATGGCCAACCTCTTTGTCCTGTTTGG < 41bp 1 0.158048972573445 1 0.036786288022995 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150737364 chr7:150737372 nonsynonymous SNV 0.955 4 29 hm5C_associated_SNPs_16981 0 0 1 0 2 ABCB8 chr7:150737355 3'AG 150737355 Downstream 18bp
chr7 150737372 150737372 1 + C T BLCA 150737364 + 150737344 150737384 41 TTTTCTGACAGGTCCATGGCCAACCTCTCTGTCCTGTTTGG TTTTCTGACAGGTCCATGGCCAACCTCTTTGTCCTGTTTGG < 41bp 1 0.158048972573445 1 0.036786288022995 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150737364 chr7:150737372 nonsynonymous SNV 0.955 4 29 hm5C_associated_SNPs_16981 0 0 1 0 2 ABCB8 chr7:150737388 5'GT 150737388 Upstream 17bp
chr3 97661173 97661173 1 + G A BLCA 97661188 + 97661168 97661208 41 CACCTGGAGCTAAAGTAGCTCTATGGACTGAACATGGGCAA CACCTAGAGCTAAAGTAGCTCTATGGACTGAACATGGGCAA < 41bp 1 0.197640597027592 1 0.073092132806778 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRYBG3 ENSG00000080200 CDS Human protein_coding chr3:97661188 chr3:97661173 nonsynonymous SNV 0.995 3 6 hm5C_associated_SNPs_16983 0 0 0 1 1 CRYBG3 chr3:97661128 3'AG 97661128 Downstream 46bp
chr20 37154656 37154656 1 + C T BLCA 37154672 + 37154652 37154692 41 GAAACGGACCCCAACAACACCCAAATGATATTAGGTTTGTA GAAATGGACCCCAACAACACCCAAATGATATTAGGTTTGTA < 41bp 1 0.0889109575048024 1 0.249909609556198 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37154672 chr20:37154656 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_16984 0 0 1 0 1 RALGAPB chr20:37154685 5'GT 37154685 Upstream 30bp
chr1 161138804 161138804 1 + C T BLCA 161138789 + 161138769 161138809 41 TGCTTCCTCTGCAGGGCGGACCCCACAGCCAGACTCAGCAC TGCTTCCTCTGCAGGGCGGACCCCACAGCCAGACTTAGCAC < 41bp 1 0.269249181982173 1 0.127410054206848 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPOX ENSG00000143224 CDS Human protein_coding chr1:161138789 chr1:161138804 nonsynonymous SNV 0.887 5 36 hm5C_associated_SNPs_16985 0 0 1 0 1 PPOX chr1:161138783 3'AG 161138783 Downstream 22bp
chr1 161138804 161138804 1 + C T BLCA 161138790 + 161138770 161138810 41 GCTTCCTCTGCAGGGCGGACCCCACAGCCAGACTCAGCACT GCTTCCTCTGCAGGGCGGACCCCACAGCCAGACTTAGCACT < 41bp 1 0.0523144967523149 1 0.11445289850235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPOX ENSG00000143224 CDS Human protein_coding chr1:161138790 chr1:161138804 nonsynonymous SNV 0.887 5 35 hm5C_associated_SNPs_16986 0 0 1 0 1 PPOX chr1:161138783 3'AG 161138783 Downstream 22bp
chr1 161138804 161138804 1 + C T BLCA 161138791 + 161138771 161138811 41 CTTCCTCTGCAGGGCGGACCCCACAGCCAGACTCAGCACTC CTTCCTCTGCAGGGCGGACCCCACAGCCAGACTTAGCACTC < 41bp 1 0.597705207061453 1 0.474503099918365 experiment 0.804589585877095 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPOX ENSG00000143224 CDS Human protein_coding chr1:161138791 chr1:161138804 nonsynonymous SNV 0.887 5 34 hm5C_associated_SNPs_16987 0 0 1 0 1 PPOX chr1:161138783 3'AG 161138783 Downstream 22bp
chr1 161138804 161138804 1 + C T BLCA 161138792 + 161138772 161138812 41 TTCCTCTGCAGGGCGGACCCCACAGCCAGACTCAGCACTCA TTCCTCTGCAGGGCGGACCCCACAGCCAGACTTAGCACTCA < 41bp 1 0.399665007377147 1 0.263952076435089 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPOX ENSG00000143224 CDS Human protein_coding chr1:161138792 chr1:161138804 nonsynonymous SNV 0.887 5 33 hm5C_associated_SNPs_16988 0 0 1 0 1 PPOX chr1:161138783 3'AG 161138783 Downstream 22bp
chr9 131345045 131345045 1 + C G BLCA 131345031 + 131345011 131345051 41 GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATCTGCAGC GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATGTGCAGC < 41bp 1 0.119016351123189 1 0.105246275663376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131345031 chr9:131345045 nonsynonymous SNV 0.873 4 35 hm5C_associated_SNPs_16989 0 0 1 0 2 SPTAN1 chr9:131344973 3'AG 131344973 Downstream 73bp
chr9 131345045 131345045 1 + C G BLCA 131345031 + 131345011 131345051 41 GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATCTGCAGC GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATGTGCAGC < 41bp 1 0.119016351123189 1 0.105246275663376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131345031 chr9:131345045 nonsynonymous SNV 0.873 4 35 hm5C_associated_SNPs_16989 0 0 1 0 2 SPTAN1 chr9:131345128 5'GT 131345128 Upstream 84bp
chr22 44547408 44547408 1 + G C BLCA 44547390 + 44547370 44547410 41 TCACTTTTGTGAACAAGCACCTGAACAAGCTGAATTTGGAG TCACTTTTGTGAACAAGCACCTGAACAAGCTGAATTTGCAG < 41bp 1 0.276795764496124 1 0.322241187095642 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PARVB ENSG00000188677 CDS Human protein_coding chr22:44547390 chr22:44547408 nonsynonymous SNV 0.997 1 39 hm5C_associated_SNPs_16990 0 0 1 0 2 PARVB chr22:44547363 3'AG 44547363 Downstream 46bp
chr22 44547408 44547408 1 + G C BLCA 44547390 + 44547370 44547410 41 TCACTTTTGTGAACAAGCACCTGAACAAGCTGAATTTGGAG TCACTTTTGTGAACAAGCACCTGAACAAGCTGAATTTGCAG < 41bp 1 0.276795764496124 1 0.322241187095642 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PARVB ENSG00000188677 CDS Human protein_coding chr22:44547390 chr22:44547408 nonsynonymous SNV 0.997 1 39 hm5C_associated_SNPs_16990 0 0 1 0 2 PARVB chr22:44547431 5'GT 44547431 Upstream 24bp
chr18 77802162 77802162 1 + G A BLCA 77802159 + 77802139 77802179 41 CTTTTGATGTCCCAGCAGACCCTGAGGAATGTGCCACCGAT CTTTTGATGTCCCAGCAGACCCTAAGGAATGTGCCACCGAT < 41bp 1 0.278908449025967 1 0.0916878581047058 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBFA ENSG00000101546 CDS Human protein_coding chr18:77802159 chr18:77802162 synonymous SNV . 0 24 hm5C_associated_SNPs_16991 0 0 1 0 2 RBFA chr18:77802135 3'AG 77802135 Downstream 28bp
chr18 77802162 77802162 1 + G A BLCA 77802159 + 77802139 77802179 41 CTTTTGATGTCCCAGCAGACCCTGAGGAATGTGCCACCGAT CTTTTGATGTCCCAGCAGACCCTAAGGAATGTGCCACCGAT < 41bp 1 0.278908449025967 1 0.0916878581047058 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBFA ENSG00000101546 CDS Human protein_coding chr18:77802159 chr18:77802162 synonymous SNV . 0 24 hm5C_associated_SNPs_16991 0 0 1 0 2 RBFA chr18:77802219 5'GT 77802219 Upstream 58bp
chr1 231401129 231401129 1 + G A BLCA 231401132 + 231401112 231401152 41 TGGCAATAAACTCTACTGGGCTGTATTCTCTGAATATGTAA TGGCAATAAACTCTACTAGGCTGTATTCTCTGAATATGTAA < 41bp 1 0.498983735970667 1 0.0789030194282532 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231401132 chr1:231401129 stopgain 1.000 1 18 hm5C_associated_SNPs_16995 0 0 1 0 2 GNPAT chr1:231401039 3'AG 231401039 Downstream 91bp
chr1 231401129 231401129 1 + G A BLCA 231401132 + 231401112 231401152 41 TGGCAATAAACTCTACTGGGCTGTATTCTCTGAATATGTAA TGGCAATAAACTCTACTAGGCTGTATTCTCTGAATATGTAA < 41bp 1 0.498983735970667 1 0.0789030194282532 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231401132 chr1:231401129 stopgain 1.000 1 18 hm5C_associated_SNPs_16995 0 0 1 0 2 GNPAT chr1:231401166 5'GT 231401166 Upstream 38bp
chr18 33785188 33785188 1 + C T BLCA 33785182 + 33785162 33785202 41 AGCAGCCCTGAGGTTCAGGGCCCAATCATCAATTTTAATGT AGCAGCCCTGAGGTTCAGGGCCCAATTATCAATTTTAATGT < 41bp 1 0.284367017999688 1 0.038888156414032 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33785182 chr18:33785188 synonymous SNV . 0 27 hm5C_associated_SNPs_16996 0 0 0 0 1 MOCOS chr18:33785239 5'GT 33785239 Upstream 52bp
chr18 33785188 33785188 1 + C T BLCA 33785183 + 33785163 33785203 41 GCAGCCCTGAGGTTCAGGGCCCAATCATCAATTTTAATGTG GCAGCCCTGAGGTTCAGGGCCCAATTATCAATTTTAATGTG < 41bp 1 0.0738673044483331 1 0.0188310742378235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33785183 chr18:33785188 synonymous SNV . 0 26 hm5C_associated_SNPs_16997 0 0 0 0 1 MOCOS chr18:33785239 5'GT 33785239 Upstream 52bp
chr18 33785188 33785188 1 + C T BLCA 33785184 + 33785164 33785204 41 CAGCCCTGAGGTTCAGGGCCCAATCATCAATTTTAATGTGC CAGCCCTGAGGTTCAGGGCCCAATTATCAATTTTAATGTGC < 41bp 1 0.0543237571294766 1 0.015964150428772 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33785184 chr18:33785188 synonymous SNV . 0 25 hm5C_associated_SNPs_16998 0 0 0 0 1 MOCOS chr18:33785239 5'GT 33785239 Upstream 52bp
chr14 35579793 35579793 1 - C T BLCA 35579783 - 35579763 35579803 41 ATTAAGAGAGGAATCAAGAGCTGTCTTTCTACAAAGAAAAA ATTAAGAGAGAAATCAAGAGCTGTCTTTCTACAAAGAAAAA < 41bp 1 0.214657750902045 1 0.105813801288605 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP2R3C ENSG00000092020 CDS Human protein_coding chr14:35579783 chr14:35579793 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_17000 0 0 1 0 2 PPP2R3C chr14:35579731 5'GT 35579731 Upstream 63bp
chr14 35579793 35579793 1 - C T BLCA 35579783 - 35579763 35579803 41 ATTAAGAGAGGAATCAAGAGCTGTCTTTCTACAAAGAAAAA ATTAAGAGAGAAATCAAGAGCTGTCTTTCTACAAAGAAAAA < 41bp 1 0.214657750902045 1 0.105813801288605 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP2R3C ENSG00000092020 CDS Human protein_coding chr14:35579783 chr14:35579793 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_17000 0 0 1 0 2 PPP2R3C chr14:35579835 3'AG 35579835 Downstream 43bp
chr6 3019730 3019730 1 + C G BLCA 3019713 + 3019693 3019733 41 TTCTTCCCCTGTGGCTTTAGCATGGCACATTACACTTCTGT TTCTTCCCCTGTGGCTTTAGCATGGCACATTACACTTGTGT < 41bp 1 0.258620657835223 1 0.529265105724335 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NQO2 ENSG00000124588 CDS Human protein_coding chr6:3019713 chr6:3019730 nonsynonymous SNV 0.998 4 38 hm5C_associated_SNPs_17001 0 0 1 0 1 NQO2 chr6:3019713 3'AG 3019713 Downstream 18bp
chr22 30403279 30403279 1 + A G BLCA 30403290 + 30403270 30403310 41 ACTTTCCCAATGGGGGAGACCTTTCTGACGTGGAGTTCGGT ACTTTCCCAGTGGGGGAGACCTTTCTGACGTGGAGTTCGGT < 41bp 1 0.0283965259761144 1 0.0838561058044434 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MTMR3 ENSG00000100330 CDS Human protein_coding chr22:30403290 chr22:30403279 nonsynonymous SNV 0.977 1 10 hm5C_associated_SNPs_17002 0 0 1 0 1 MTMR3 chr22:30403308 5'GT 30403308 Upstream 30bp
chr12 62783261 62783261 1 + A G BLCA 62783266 + 62783246 62783286 41 AGATCTTTGTACAGCATTGTCTGCTTTGTCAGGAATACCTG AGATCTTTGTACAGCGTTGTCTGCTTTGTCAGGAATACCTG < 41bp 1 0.538447502324599 1 0.231389969587326 experiment 0.923104995350803 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP15 ENSG00000135655 CDS Human protein_coding chr12:62783266 chr12:62783261 synonymous SNV . 0 16 hm5C_associated_SNPs_17003 0 0 1 0 2 USP15 chr12:62783211 3'AG 62783211 Downstream 51bp
chr12 62783261 62783261 1 + A G BLCA 62783266 + 62783246 62783286 41 AGATCTTTGTACAGCATTGTCTGCTTTGTCAGGAATACCTG AGATCTTTGTACAGCGTTGTCTGCTTTGTCAGGAATACCTG < 41bp 1 0.538447502324599 1 0.231389969587326 experiment 0.923104995350803 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP15 ENSG00000135655 CDS Human protein_coding chr12:62783266 chr12:62783261 synonymous SNV . 0 16 hm5C_associated_SNPs_17003 0 0 1 0 2 USP15 chr12:62783294 5'GT 62783294 Upstream 34bp
chr20 60878630 60878630 1 + G A BLCA 60878643 + 60878623 60878663 41 GGATGACGACCTCAGGCGCGCTCTTTCCAAGCCTGGTGCCA GGATGACAACCTCAGGCGCGCTCTTTCCAAGCCTGGTGCCA < 41bp 1 0.14044603413074 1 0.0158643424510956 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60878643 chr20:60878630 synonymous SNV . 0 8 hm5C_associated_SNPs_17004 0 0 1 0 1 ADRM1 chr20:60878624 3'AG 60878624 Downstream 7bp
chr6 36442577 36442577 1 + G T BLCA 36442596 + 36442576 36442616 41 TGACTATGCCTCTCAGCCAGCAAATCTTCAGTTCCCTCACA TTACTATGCCTCTCAGCCAGCAAATCTTCAGTTCCCTCACA < 41bp 1 0.165243010158394 1 0.341740220785141 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KCTD20 ENSG00000112078 CDS Human protein_coding chr6:36442596 chr6:36442577 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_17005 0 0 1 0 1 KCTD20 chr6:36442566 3'AG 36442566 Downstream 12bp
chr11 64023902 64023902 1 + C T BLCA 64023887 + 64023867 64023907 41 TACCTGACGCTGGAGCAGCTCATGGACTTCATCAACCAGAA TACCTGACGCTGGAGCAGCTCATGGACTTCATCAATCAGAA < 41bp 1 0.362455088751447 1 0.256123930215836 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64023887 chr11:64023902 synonymous SNV . 0 36 hm5C_associated_SNPs_17006 0 0 1 0 1 PLCB3 chr11:64023848 3'AG 64023848 Downstream 55bp
chr1 11080561 11080561 1 + C T BLCA 11080572 + 11080552 11080592 41 GAGGATGAGCTGCGGGAGTTCTTCTCTCAGTACGGGGATGT GAGGATGAGTTGCGGGAGTTCTTCTCTCAGTACGGGGATGT < 41bp 1 0.505021950828638 1 0.0469268560409546 experiment 0.989956098342725 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TARDBP ENSG00000120948 CDS Human protein_coding chr1:11080572 chr1:11080561 synonymous SNV . 0 10 hm5C_associated_SNPs_17007 0 0 1 0 2 TARDBP chr1:11080486 3'AG 11080486 Downstream 76bp
chr1 11080561 11080561 1 + C T BLCA 11080572 + 11080552 11080592 41 GAGGATGAGCTGCGGGAGTTCTTCTCTCAGTACGGGGATGT GAGGATGAGTTGCGGGAGTTCTTCTCTCAGTACGGGGATGT < 41bp 1 0.505021950828638 1 0.0469268560409546 experiment 0.989956098342725 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TARDBP ENSG00000120948 CDS Human protein_coding chr1:11080572 chr1:11080561 synonymous SNV . 0 10 hm5C_associated_SNPs_17007 0 0 1 0 2 TARDBP chr1:11080656 5'GT 11080656 Upstream 96bp
chr20 42680112 42680112 1 + C T BLCA 42680122 + 42680102 42680142 41 TCCCCATCACCGCCGGGGAGCAAGTCAGCGACCCCCTCTCC TCCCCATCACTGCCGGGGAGCAAGTCAGCGACCCCCTCTCC < 41bp 1 0.458777793576007 1 0.130777895450592 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42680122 chr20:42680112 nonsynonymous SNV 0.745 4 11 hm5C_associated_SNPs_17012 0 0 0 0 1 TOX2 chr20:42680185 5'GT 42680185 Upstream 74bp
chr14 102466434 102466434 1 + G T BLCA 102466414 + 102466394 102466434 41 GGACGACAGAGAGAAGTGTGCAAAGGCCAAGGAGGCGCTGG GGACGACAGAGAGAAGTGTGCAAAGGCCAAGGAGGCGCTGT < 41bp 1 0.193756508985205 1 0.775957345962524 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466414 chr14:102466434 stopgain 0.885 1 41 hm5C_associated_SNPs_17013 0 0 1 0 1 DYNC1H1 chr14:102466481 5'GT 102466481 Upstream 48bp
chr9 101765795 101765795 1 + G A BLCA 101765812 + 101765792 101765832 41 GCAGAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTC GCAAAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTC < 41bp 1 0.727839219190001 1 0.353037059307098 experiment 0.544321561619998 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765812 chr9:101765795 nonsynonymous SNV 0.042 3 4 hm5C_associated_SNPs_17014 0 0 0 0 2 COL15A1 chr9:101765735 3'AG 101765735 Downstream 61bp
chr9 101765795 101765795 1 + G A BLCA 101765812 + 101765792 101765832 41 GCAGAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTC GCAAAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTC < 41bp 1 0.727839219190001 1 0.353037059307098 experiment 0.544321561619998 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765812 chr9:101765795 nonsynonymous SNV 0.042 3 4 hm5C_associated_SNPs_17014 0 0 0 0 2 COL15A1 chr9:101765869 5'GT 101765869 Upstream 75bp
chr9 101765795 101765795 1 + G A BLCA 101765814 + 101765794 101765834 41 AGAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTCTA AAAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTCTA < 41bp 1 0.700777347223413 1 0.914559960365295 experiment 0.598445305553173 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765814 chr9:101765795 nonsynonymous SNV 0.042 3 2 hm5C_associated_SNPs_17015 0 0 0 0 2 COL15A1 chr9:101765735 3'AG 101765735 Downstream 61bp
chr9 101765795 101765795 1 + G A BLCA 101765814 + 101765794 101765834 41 AGAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTCTA AAAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTCTA < 41bp 1 0.700777347223413 1 0.914559960365295 experiment 0.598445305553173 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765814 chr9:101765795 nonsynonymous SNV 0.042 3 2 hm5C_associated_SNPs_17015 0 0 0 0 2 COL15A1 chr9:101765869 5'GT 101765869 Upstream 75bp
chr3 158310367 158310367 1 + G C BLCA 158310369 + 158310349 158310389 41 TGATGGTGAAGATTCTTTGACTGTAAGTTCTTTTTTTTAAG TGATGGTGAAGATTCTTTCACTGTAAGTTCTTTTTTTTAAG < 41bp 1 0.629344029831 1 0.136042207479477 experiment 0.741311940338 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MLF1 ENSG00000178053 CDS Human protein_coding chr3:158310369 chr3:158310367 nonsynonymous SNV 0.869 0 19 hm5C_associated_SNPs_17016 0 0 0 0 1 MLF1 chr3:158310370 5'GT 158310370 Upstream 4bp
chr12 131488773 131488773 1 + C T BLCA 131488788 + 131488768 131488808 41 TTCCTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCA TTCCTTCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCA < 41bp 1 0.241389734034473 1 0.662658393383026 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488788 chr12:131488773 nonsynonymous SNV 0.011 1 6 hm5C_associated_SNPs_17018 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 69bp
chr12 131488773 131488773 1 + C T BLCA 131488791 + 131488771 131488811 41 CTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCC CTTCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCC < 41bp 1 0.0572642387867869 1 0.0586719214916229 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488791 chr12:131488773 nonsynonymous SNV 0.011 1 3 hm5C_associated_SNPs_17019 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 69bp
chr12 131488773 131488773 1 + C T BLCA 131488792 + 131488772 131488812 41 TCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCA TTCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCA < 41bp 1 0.202190144372529 1 0.359521090984344 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488792 chr12:131488773 nonsynonymous SNV 0.011 1 2 hm5C_associated_SNPs_17020 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 69bp
chr12 131488773 131488773 1 + C T BLCA 131488793 + 131488773 131488813 41 CCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAG TCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAG < 41bp 1 0.667538478998707 1 0.497197270393372 experiment 0.664923042002587 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488793 chr12:131488773 nonsynonymous SNV 0.011 1 1 hm5C_associated_SNPs_17021 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 69bp
chr4 524279 524279 1 + G A BLCA 524262 + 524242 524282 41 GTTTTGTTTATGTCTTTGTCCTTGGCATTCTGTTCACGGGC GTTTTGTTTATGTCTTTGTCCTTGGCATTCTGTTCACAGGC < 41bp 1 0.295093091144555 1 0.192519515752792 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIGG ENSG00000174227 CDS Human protein_coding chr4:524262 chr4:524279 synonymous SNV . 0 38 hm5C_associated_SNPs_17022 0 0 1 2 1 PIGG chr4:524225 3'AG 524225 Downstream 55bp
chr19 52705266 52705266 1 + G C BLCA 52705272 + 52705252 52705292 41 AAAGGACCCGAAGTGAGCTTCTGCCTTTCCTTACAGGTAAC AAAGGACCCGAAGTCAGCTTCTGCCTTTCCTTACAGGTAAC < 41bp 1 0.323788321223653 1 0.379449307918549 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52705272 chr19:52705266 nonsynonymous SNV 0.997 3 15 hm5C_associated_SNPs_17023 0 0 1 0 2 PPP2R1A chr19:52705197 3'AG 52705197 Downstream 70bp
chr19 52705266 52705266 1 + G C BLCA 52705272 + 52705252 52705292 41 AAAGGACCCGAAGTGAGCTTCTGCCTTTCCTTACAGGTAAC AAAGGACCCGAAGTCAGCTTCTGCCTTTCCTTACAGGTAAC < 41bp 1 0.323788321223653 1 0.379449307918549 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52705272 chr19:52705266 nonsynonymous SNV 0.997 3 15 hm5C_associated_SNPs_17023 0 0 1 0 2 PPP2R1A chr19:52705287 5'GT 52705287 Upstream 22bp
chr3 37090079 37090079 1 + C T BLCA 37090068 + 37090048 37090088 41 ATGTGCCCCCTTTGGAGGGACTGCCTATCTTCATTCTTCGA ATGTGCCCCCTTTGGAGGGACTGCCTATCTTTATTCTTCGA < 41bp 1 0.39154332160956 1 0.0684399604797363 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MLH1 ENSG00000076242 CDS Human protein_coding chr3:37090068 chr3:37090079 synonymous SNV . 0 32 hm5C_associated_SNPs_17024 0 0 1 0 2 MLH1 chr3:37090008 3'AG 37090008 Downstream 72bp
chr3 37090079 37090079 1 + C T BLCA 37090068 + 37090048 37090088 41 ATGTGCCCCCTTTGGAGGGACTGCCTATCTTCATTCTTCGA ATGTGCCCCCTTTGGAGGGACTGCCTATCTTTATTCTTCGA < 41bp 1 0.39154332160956 1 0.0684399604797363 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MLH1 ENSG00000076242 CDS Human protein_coding chr3:37090068 chr3:37090079 synonymous SNV . 0 32 hm5C_associated_SNPs_17024 0 0 1 0 2 MLH1 chr3:37090100 5'GT 37090100 Upstream 22bp
chr7 91981897 91981897 1 + C G BLCA 91981887 + 91981867 91981907 41 AGGGTCAAATACATCTGGATCTGATACACTCAGCTTCCCAT AGGGTCAAATACATCTGGATCTGATACACTGAGCTTCCCAT < 41bp 1 0.24688271451124 1 0.0382098257541656 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:91981887 chr7:91981897 synonymous SNV . 0 31 hm5C_associated_SNPs_17027 0 0 1 0 1 ANKIB1 chr7:91981956 5'GT 91981956 Upstream 60bp
chr10 103294607 103294607 1 + C T BLCA 103294600 + 103294580 103294620 41 GGTGCTGGTCGGACACCGAGCTGCTGTCAATGTTGTAGACT GGTGCTGGTCGGACACCGAGCTGCTGTTAATGTTGTAGACT < 41bp 1 0.445617368329197 1 0.134213507175446 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BTRC ENSG00000166167 CDS Human protein_coding chr10:103294600 chr10:103294607 synonymous SNV . 0 28 hm5C_associated_SNPs_17028 0 0 0 0 1 BTRC chr10:103294667 5'GT 103294667 Upstream 61bp
chr6 31936655 31936655 1 + G T BLCA 31936653 + 31936633 31936673 41 CCCTTTTTCTTGCAGGTGCTCCGAACCCTGGGTTATGTGGA CCCTTTTTCTTGCAGGTGCTCCTAACCCTGGGTTATGTGGA < 41bp 1 0.13126539469483 1 0.165636956691742 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31936653 chr6:31936655 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_17029 0 0 1 0 1 SKIV2L chr6:31936648 3'AG 31936648 Downstream 8bp
chr12 62784646 62784646 1 + G A BLCA 62784645 + 62784625 62784665 41 ATTTTTGATTTTACTTAAGCCGATATGTCAAAATATCTACT ATTTTTGATTTTACTTAAGCCAATATGTCAAAATATCTACT < 41bp 1 0.135407122840121 1 0.0540215969085693 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient USP15 ENSG00000135655 CDS Human protein_coding chr12:62784645 chr12:62784646 nonsynonymous SNV 0.934 3 22 hm5C_associated_SNPs_17030 0 0 1 0 1 USP15 chr12:62784644 3'AG 62784644 Downstream 3bp
chr2 74077584 74077584 1 + G C BLCA 74077580 + 74077560 74077600 41 GATTACTGCAACACAGAGAACGAAGAAGAACTTTTCCTCAT GATTACTGCAACACAGAGAACGAACAAGAACTTTTCCTCAT < 41bp 1 0.347650460121457 1 0.195281475782394 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STAMBP ENSG00000124356 CDS Human protein_coding chr2:74077580 chr2:74077584 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_17031 0 0 1 0 2 STAMBP chr2:74077503 3'AG 74077503 Downstream 82bp
chr2 74077584 74077584 1 + G C BLCA 74077580 + 74077560 74077600 41 GATTACTGCAACACAGAGAACGAAGAAGAACTTTTCCTCAT GATTACTGCAACACAGAGAACGAACAAGAACTTTTCCTCAT < 41bp 1 0.347650460121457 1 0.195281475782394 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STAMBP ENSG00000124356 CDS Human protein_coding chr2:74077580 chr2:74077584 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_17031 0 0 1 0 2 STAMBP chr2:74077640 5'GT 74077640 Upstream 57bp
chr20 47615021 47615021 1 + G C BLCA 47615033 + 47615013 47615053 41 TGGCATGTGATTGGAGATCACTTCAATAAGGTAACTCTTCA TGGCATGTCATTGGAGATCACTTCAATAAGGTAACTCTTCA < 41bp 1 0.277445170174484 1 0.644370138645172 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47615033 chr20:47615021 synonymous SNV . 0 9 hm5C_associated_SNPs_17032 0 0 1 0 1 ARFGEF2 chr20:47615042 5'GT 47615042 Upstream 22bp
chr16 2806578 2806578 1 + C G BLCA 2806567 + 2806547 2806587 41 AGCGCAAGCGGCGCGTCGAGCTGCGATGCCTCGAGCTGGAG AGCGCAAGCGGCGCGTCGAGCTGCGATGCCTGGAGCTGGAG < 41bp 1 0.650908431860775 1 0.291789889335632 experiment 0.698183136278451 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2806567 chr16:2806578 synonymous SNV . 0 32 hm5C_associated_SNPs_17033 0 0 1 0 1 SRRM2 chr16:2806607 5'GT 2806607 Upstream 30bp
chr16 2806578 2806578 1 + C G BLCA 2806570 + 2806550 2806590 41 GCAAGCGGCGCGTCGAGCTGCGATGCCTCGAGCTGGAGGAG GCAAGCGGCGCGTCGAGCTGCGATGCCTGGAGCTGGAGGAG < 41bp 1 0.227687667211477 1 0.375866889953613 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2806570 chr16:2806578 synonymous SNV . 0 29 hm5C_associated_SNPs_17034 0 0 1 0 1 SRRM2 chr16:2806607 5'GT 2806607 Upstream 30bp
chr16 2806578 2806578 1 + C G BLCA 2806582 + 2806562 2806602 41 TCGAGCTGCGATGCCTCGAGCTGGAGGAGATGATGGAAGAG TCGAGCTGCGATGCCTGGAGCTGGAGGAGATGATGGAAGAG < 41bp 1 0.771010061588925 1 0.527713060379028 experiment 0.457979876822149 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2806582 chr16:2806578 synonymous SNV . 0 17 hm5C_associated_SNPs_17035 0 0 1 0 1 SRRM2 chr16:2806607 5'GT 2806607 Upstream 30bp
chr6 42975953 42975953 1 + C T BLCA 42975958 + 42975938 42975978 41 GGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGAG GGTTCATCTACGAGATGGAGCATCACAACGGGATTGCTGAG < 41bp 1 0.306978526167837 1 0.0847899615764618 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975958 chr6:42975953 nonsynonymous SNV 0.946 4 16 hm5C_associated_SNPs_17040 0 0 1 0 2 PPP2R5D chr6:42975939 3'AG 42975939 Downstream 15bp
chr6 42975953 42975953 1 + C T BLCA 42975958 + 42975938 42975978 41 GGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGAG GGTTCATCTACGAGATGGAGCATCACAACGGGATTGCTGAG < 41bp 1 0.306978526167837 1 0.0847899615764618 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975958 chr6:42975953 nonsynonymous SNV 0.946 4 16 hm5C_associated_SNPs_17040 0 0 1 0 2 PPP2R5D chr6:42975998 5'GT 42975998 Upstream 46bp
chr22 38352811 38352811 1 + G C BLCA 38352823 + 38352803 38352843 41 ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCC ATGTGGAGCAGGATGAAGGGCTAGATGACTTGGAGAATGCC < 41bp 1 0.693849122102234 1 0.549618124961853 experiment 0.612301755795532 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352823 chr22:38352811 nonsynonymous SNV 0.998 1 9 hm5C_associated_SNPs_17041 0 0 1 0 3 POLR2F chr22:38352780 3'AG 38352780 Downstream 32bp
chr22 38352811 38352811 1 + G C BLCA 38352823 + 38352803 38352843 41 ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCC ATGTGGAGCAGGATGAAGGGCTAGATGACTTGGAGAATGCC < 41bp 1 0.693849122102234 1 0.549618124961853 experiment 0.612301755795532 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352823 chr22:38352811 nonsynonymous SNV 0.998 1 9 hm5C_associated_SNPs_17041 0 0 1 0 3 POLR2F chr22:38352849 5'GT 38352849 Upstream 39bp
chr22 38352811 38352811 1 + G C BLCA 38352823 + 38352803 38352843 41 ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCC ATGTGGAGCAGGATGAAGGGCTAGATGACTTGGAGAATGCC < 41bp 1 0.693849122102234 1 0.549618124961853 experiment 0.612301755795532 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352823 chr22:38352811 nonsynonymous SNV 0.998 1 9 hm5C_associated_SNPs_17041 0 0 1 0 3 POLR2F chr22:38352908 5'GT 38352908 Upstream 98bp
chr22 38352811 38352811 1 + G C BLCA 38352831 + 38352811 38352851 41 GAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT CAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT < 41bp 1 0.476397475433558 1 0.173874467611313 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352831 chr22:38352811 nonsynonymous SNV 0.998 1 1 hm5C_associated_SNPs_17042 0 0 1 0 3 POLR2F chr22:38352780 3'AG 38352780 Downstream 32bp
chr22 38352811 38352811 1 + G C BLCA 38352831 + 38352811 38352851 41 GAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT CAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT < 41bp 1 0.476397475433558 1 0.173874467611313 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352831 chr22:38352811 nonsynonymous SNV 0.998 1 1 hm5C_associated_SNPs_17042 0 0 1 0 3 POLR2F chr22:38352849 5'GT 38352849 Upstream 39bp
chr22 38352811 38352811 1 + G C BLCA 38352831 + 38352811 38352851 41 GAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT CAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT < 41bp 1 0.476397475433558 1 0.173874467611313 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352831 chr22:38352811 nonsynonymous SNV 0.998 1 1 hm5C_associated_SNPs_17042 0 0 1 0 3 POLR2F chr22:38352908 5'GT 38352908 Upstream 98bp
chr9 135929290 135929290 1 + C G BLCA 135929296 + 135929276 135929316 41 ATGCCAAGATTTATCAAGTCCTCGATTTCCGAATCCGTTGT ATGCCAAGATTTATGAAGTCCTCGATTTCCGAATCCGTTGT < 41bp 1 0.759878932317208 1 0.922631978988647 experiment 0.480242135365584 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135929296 chr9:135929290 nonsynonymous SNV 0.999 3 15 hm5C_associated_SNPs_17043 0 0 1 0 2 GTF3C5 chr9:135929215 3'AG 135929215 Downstream 76bp
chr9 135929290 135929290 1 + C G BLCA 135929296 + 135929276 135929316 41 ATGCCAAGATTTATCAAGTCCTCGATTTCCGAATCCGTTGT ATGCCAAGATTTATGAAGTCCTCGATTTCCGAATCCGTTGT < 41bp 1 0.759878932317208 1 0.922631978988647 experiment 0.480242135365584 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135929296 chr9:135929290 nonsynonymous SNV 0.999 3 15 hm5C_associated_SNPs_17043 0 0 1 0 2 GTF3C5 chr9:135929329 5'GT 135929329 Upstream 40bp
chr7 142459791 142459791 1 + G A BLCA 142459774 + 142459754 142459794 41 AATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGCGTGT AATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGCATGT < 41bp 1 0.690933133599853 1 0.0701250731945038 experiment 0.618133732800294 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459774 chr7:142459791 nonsynonymous SNV 0.004 5 38 hm5C_associated_SNPs_17044 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 88bp
chr7 142459791 142459791 1 + G A BLCA 142459781 + 142459761 142459801 41 CTCTCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCAT CTCTCCTCACGTGCAGTAATCAACGCCCGCATGTCCACCAT < 41bp 1 0.723982767001492 1 0.792762398719788 experiment 0.552034465997016 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459781 chr7:142459791 nonsynonymous SNV 0.004 5 31 hm5C_associated_SNPs_17045 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 88bp
chr7 142459791 142459791 1 + G A BLCA 142459784 + 142459764 142459804 41 TCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTC TCCTCACGTGCAGTAATCAACGCCCGCATGTCCACCATCTC < 41bp 1 0.58618398139005 1 0.284915864467621 experiment 0.8276320372199 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459784 chr7:142459791 nonsynonymous SNV 0.004 5 28 hm5C_associated_SNPs_17046 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 88bp
chr7 142459791 142459791 1 + G A BLCA 142459786 + 142459766 142459806 41 CTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTC CTCACGTGCAGTAATCAACGCCCGCATGTCCACCATCTCTC < 41bp 1 0.455019081791023 1 0.064426064491272 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459786 chr7:142459791 nonsynonymous SNV 0.004 5 26 hm5C_associated_SNPs_17047 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 88bp
chr7 142459791 142459791 1 + G A BLCA 142459787 + 142459767 142459807 41 TCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCT TCACGTGCAGTAATCAACGCCCGCATGTCCACCATCTCTCT < 41bp 1 0.616737135578041 1 0.0484356880187988 experiment 0.766525728843919 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459787 chr7:142459791 nonsynonymous SNV 0.004 5 25 hm5C_associated_SNPs_17048 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 88bp
chr7 142459791 142459791 1 + G A BLCA 142459788 + 142459768 142459808 41 CACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCTG CACGTGCAGTAATCAACGCCCGCATGTCCACCATCTCTCTG < 41bp 1 0.560578009731791 1 0.0170938670635223 experiment 0.878843980536418 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459788 chr7:142459791 nonsynonymous SNV 0.004 5 24 hm5C_associated_SNPs_17049 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 88bp
chr7 142459791 142459791 1 + G A BLCA 142459790 + 142459770 142459810 41 CGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCC CGTGCAGTAATCAACGCCCGCATGTCCACCATCTCTCTGCC < 41bp 1 0.420685603756479 1 0.0465171039104462 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459790 chr7:142459791 nonsynonymous SNV 0.004 5 22 hm5C_associated_SNPs_17050 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 88bp
chr7 142459791 142459791 1 + G A BLCA 142459795 + 142459775 142459815 41 AGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCG AGTAATCAACGCCCGCATGTCCACCATCTCTCTGCCCACCG < 41bp 1 0.394175303788203 1 0.0925235450267792 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459795 chr7:142459791 nonsynonymous SNV 0.004 5 17 hm5C_associated_SNPs_17051 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 88bp
chr7 142459791 142459791 1 + G A BLCA 142459798 + 142459778 142459818 41 AATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCC AATCAACGCCCGCATGTCCACCATCTCTCTGCCCACCGCCC < 41bp 1 0.162528395312808 1 0.0353191196918488 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459798 chr7:142459791 nonsynonymous SNV 0.004 5 14 hm5C_associated_SNPs_17052 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 88bp
chr7 142459791 142459791 1 + G A BLCA 142459799 + 142459779 142459819 41 ATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCC ATCAACGCCCGCATGTCCACCATCTCTCTGCCCACCGCCCC < 41bp 1 0.374858634774109 1 0.124049872159958 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459799 chr7:142459791 nonsynonymous SNV 0.004 5 13 hm5C_associated_SNPs_17053 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 88bp
chr7 142459791 142459791 1 + G A BLCA 142459802 + 142459782 142459822 41 AACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCC AACGCCCGCATGTCCACCATCTCTCTGCCCACCGCCCCTCC < 41bp 1 0.426694279663449 1 0.142105728387833 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459802 chr7:142459791 nonsynonymous SNV 0.004 5 10 hm5C_associated_SNPs_17054 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 88bp
chr7 142459791 142459791 1 + G A BLCA 142459804 + 142459784 142459824 41 CGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAG CGCCCGCATGTCCACCATCTCTCTGCCCACCGCCCCTCCAG < 41bp 1 0.652737921906755 1 0.162465125322342 experiment 0.69452415618649 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459804 chr7:142459791 nonsynonymous SNV 0.004 5 8 hm5C_associated_SNPs_17055 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 88bp
chr7 142459791 142459791 1 + G A BLCA 142459806 + 142459786 142459826 41 CCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCC CCCGCATGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCC < 41bp 1 0.612261304201641 1 0.433775186538696 experiment 0.775477391596719 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459806 chr7:142459791 nonsynonymous SNV 0.004 5 6 hm5C_associated_SNPs_17056 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 88bp
chr7 142459791 142459791 1 + G A BLCA 142459809 + 142459789 142459829 41 GCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACT GCATGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACT < 41bp 1 0.159668803018253 1 0.0248436629772186 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459809 chr7:142459791 nonsynonymous SNV 0.004 5 3 hm5C_associated_SNPs_17057 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 88bp
chr7 142459791 142459791 1 + G A BLCA 142459810 + 142459790 142459830 41 CGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTG CATGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTG < 41bp 1 0.19351531392433 1 0.0580365061759949 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459810 chr7:142459791 nonsynonymous SNV 0.004 5 2 hm5C_associated_SNPs_17058 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 88bp
chr7 142459791 142459791 1 + G A BLCA 142459811 + 142459791 142459831 41 GTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGG ATGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGG < 41bp 1 0.667650418015886 1 0.036198616027832 experiment 0.664699163968228 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459811 chr7:142459791 nonsynonymous SNV 0.004 5 1 hm5C_associated_SNPs_17059 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 88bp
chr11 764330 764330 1 + C G BLCA 764334 + 764314 764354 41 CACCTGGATGAGAAGTCTTTCCGTTGGTTGCACAACGAGGA CACCTGGATGAGAAGTGTTTCCGTTGGTTGCACAACGAGGA < 41bp 1 0.207982109440549 1 0.486180782318115 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control TALDO1 ENSG00000177156 CDS Human protein_coding chr11:764334 chr11:764330 nonsynonymous SNV 0.981 2 17 hm5C_associated_SNPs_17060 0 0 1 0 1 TALDO1 chr11:764288 3'AG 764288 Downstream 43bp
chr16 28884772 28884772 1 + G A BLCA 28884771 + 28884751 28884791 41 TTACCATTCCTATCCAGAACCGACCACCTCCCATGACCCAC TTACCATTCCTATCCAGAACCAACCACCTCCCATGACCCAC < 41bp 1 0.21187568551673 1 0.507961094379425 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28884771 chr16:28884772 nonsynonymous SNV 0.989 1 22 hm5C_associated_SNPs_17064 0 0 1 0 1 SH2B1 chr16:28884768 3'AG 28884768 Downstream 5bp
chr16 28884772 28884772 1 + G A BLCA 28884777 + 28884757 28884797 41 TTCCTATCCAGAACCGACCACCTCCCATGACCCACCCCAGC TTCCTATCCAGAACCAACCACCTCCCATGACCCACCCCAGC < 41bp 1 0.0208993610687418 1 0.216281920671463 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28884777 chr16:28884772 nonsynonymous SNV 0.989 1 16 hm5C_associated_SNPs_17065 0 0 1 0 1 SH2B1 chr16:28884768 3'AG 28884768 Downstream 5bp
chr9 134026017 134026017 1 + G C BLCA 134026009 + 134025989 134026029 41 TGTGGCTTCTACAGATTGCACACTTTCAGAAGGAGTTGGAA TGTGGCTTCTACAGATTGCACACTTTCACAAGGAGTTGGAA < 41bp 1 0.0863240073114034 1 0.0370836555957794 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NUP214 ENSG00000126883 CDS Human protein_coding chr9:134026009 chr9:134026017 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_17066 0 0 1 0 1 NUP214 chr9:134026003 3'AG 134026003 Downstream 15bp
chr16 2011251 2011251 1 + C T BLCA 2011268 + 2011248 2011288 41 CATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGG CATTATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGG < 41bp 1 0.614091563100916 1 0.460699200630188 experiment 0.771816873798168 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011268 chr16:2011251 synonymous SNV . 0 4 hm5C_associated_SNPs_17068 0 0 1 0 2 NDUFB10 chr16:2011154 3'AG 2011154 Downstream 98bp
chr16 2011251 2011251 1 + C T BLCA 2011268 + 2011248 2011288 41 CATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGG CATTATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGG < 41bp 1 0.614091563100916 1 0.460699200630188 experiment 0.771816873798168 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011268 chr16:2011251 synonymous SNV . 0 4 hm5C_associated_SNPs_17068 0 0 1 0 2 NDUFB10 chr16:2011292 5'GT 2011292 Upstream 42bp
chr16 2011251 2011251 1 + C T BLCA 2011269 + 2011249 2011289 41 ATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGGA ATTATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGGA < 41bp 1 0.638645775506193 1 0.486008614301682 experiment 0.722708448987615 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011269 chr16:2011251 synonymous SNV . 0 3 hm5C_associated_SNPs_17069 0 0 1 0 2 NDUFB10 chr16:2011154 3'AG 2011154 Downstream 98bp
chr16 2011251 2011251 1 + C T BLCA 2011269 + 2011249 2011289 41 ATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGGA ATTATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGGA < 41bp 1 0.638645775506193 1 0.486008614301682 experiment 0.722708448987615 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011269 chr16:2011251 synonymous SNV . 0 3 hm5C_associated_SNPs_17069 0 0 1 0 2 NDUFB10 chr16:2011292 5'GT 2011292 Upstream 42bp
chr18 21474922 21474922 1 + A T BLCA 21474924 + 21474904 21474944 41 ACCTGGCCACCATGGGCGAGCAGCTCCGCCTGGTCAAGTCT ACCTGGCCACCATGGGCGTGCAGCTCCGCCTGGTCAAGTCT < 41bp 1 0.154240509332518 1 0.210938394069672 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21474924 chr18:21474922 nonsynonymous SNV 0.973 0 19 hm5C_associated_SNPs_17070 0 0 0 0 1 LAMA3 chr18:21474871 3'AG 21474871 Downstream 52bp
chr1 180034352 180034352 1 + G A BLCA 180034360 + 180034340 180034380 41 ATCTCCAGCAGTGAAACTAGCAGCATTATGCAGAAACTGAA ATCTCCAGCAGTAAAACTAGCAGCATTATGCAGAAACTGAA < 41bp 1 0.496560167266964 1 0.0972406566143036 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180034360 chr1:180034352 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_17071 0 0 1 0 1 CEP350 chr1:180034407 5'GT 180034407 Upstream 56bp
chr21 34635155 34635155 1 + G C BLCA 34635140 + 34635120 34635160 41 GGCCATTTCCTAACCTGCCACCGTTGGAAGCCATGGATATG GGCCATTTCCTAACCTGCCACCGTTGGAAGCCATGCATATG < 41bp 1 0.0365743431371736 1 0.0381505787372589 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IFNAR2 ENSG00000159110 CDS Human protein_coding chr21:34635140 chr21:34635155 nonsynonymous SNV 0.004 1 36 hm5C_associated_SNPs_17072 0 0 1 1 1 IFNAR2 chr21:34635098 3'AG 34635098 Downstream 58bp
chr9 106876995 106876995 1 + G C BLCA 106876976 + 106876956 106876996 41 AACTTTTGTATTTCAGGGATCCAGAGAAGAACTGGAATAGA AACTTTTGTATTTCAGGGATCCAGAGAAGAACTGGAATACA < 41bp 1 0.308608857038698 1 0.645601630210876 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMC2 ENSG00000136824 CDS Human protein_coding chr9:106876976 chr9:106876995 nonsynonymous SNV 0.998 1 40 hm5C_associated_SNPs_17073 0 0 1 0 1 SMC2 chr9:106876972 3'AG 106876972 Downstream 24bp
chr2 152276738 152276738 1 + G C BLCA 152276742 + 152276722 152276762 41 AATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAACTGG AATTCAAATGGGAGAACAGGCAGTGAGGTGGGCAAAACTGG < 41bp 1 0.318278320844317 1 0.174992352724075 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RIF1 ENSG00000080345 CDS Human protein_coding chr2:152276742 chr2:152276738 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_17074 0 0 1 0 1 RIF1 chr2:152276704 3'AG 152276704 Downstream 35bp
chr2 238664806 238664806 1 + G A BLCA 238664803 + 238664783 238664823 41 TTTGCTGAAGTCAAGGAGGCCCTGAAGCAAAGAGAGGAAAT TTTGCTGAAGTCAAGGAGGCCCTAAAGCAAAGAGAGGAAAT < 41bp 1 0.0623307555922703 1 0.114193916320801 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238664803 chr2:238664806 synonymous SNV . 0 24 hm5C_associated_SNPs_17075 0 0 1 0 2 LRRFIP1 chr2:238664738 3'AG 238664738 Downstream 69bp
chr2 238664806 238664806 1 + G A BLCA 238664803 + 238664783 238664823 41 TTTGCTGAAGTCAAGGAGGCCCTGAAGCAAAGAGAGGAAAT TTTGCTGAAGTCAAGGAGGCCCTAAAGCAAAGAGAGGAAAT < 41bp 1 0.0623307555922703 1 0.114193916320801 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238664803 chr2:238664806 synonymous SNV . 0 24 hm5C_associated_SNPs_17075 0 0 1 0 2 LRRFIP1 chr2:238664830 5'GT 238664830 Upstream 25bp
chr9 91963078 91963078 1 + G C BLCA 91963073 + 91963053 91963093 41 AGCTTTTACCAGTGATGACACACAAGATGGAGAGAGTGGTG AGCTTTTACCAGTGATGACACACAACATGGAGAGAGTGGTG < 41bp 1 0.725793232286136 1 0.165505617856979 experiment 0.548413535427729 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SECISBP2 ENSG00000187742 CDS Human protein_coding chr9:91963073 chr9:91963078 nonsynonymous SNV 0.044 3 26 hm5C_associated_SNPs_17076 0 0 1 0 2 SECISBP2 chr9:91962994 3'AG 91962994 Downstream 85bp
chr9 91963078 91963078 1 + G C BLCA 91963073 + 91963053 91963093 41 AGCTTTTACCAGTGATGACACACAAGATGGAGAGAGTGGTG AGCTTTTACCAGTGATGACACACAACATGGAGAGAGTGGTG < 41bp 1 0.725793232286136 1 0.165505617856979 experiment 0.548413535427729 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SECISBP2 ENSG00000187742 CDS Human protein_coding chr9:91963073 chr9:91963078 nonsynonymous SNV 0.044 3 26 hm5C_associated_SNPs_17076 0 0 1 0 2 SECISBP2 chr9:91963129 5'GT 91963129 Upstream 52bp
chr4 57876570 57876570 1 + G A BLCA 57876563 + 57876543 57876583 41 CTTTTGCGTCTACTCTTTCTCACCTGCGTCGTTTAAATTCT CTTTTGCGTCTACTCTTTCTCACCTGCATCGTTTAAATTCT < 41bp 1 0.58174052751529 1 0.407169997692108 experiment 0.836518944969421 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57876563 chr4:57876570 nonsynonymous SNV 0.998 5 28 hm5C_associated_SNPs_17077 0 0 1 0 1 POLR2B chr4:57876527 3'AG 57876527 Downstream 44bp
chr19 41711905 41711905 1 + C T BLCA 41711910 + 41711890 41711930 41 TCCATCCTGCATGACCCCAACATCTTCAAGCACCCAGAAGA TCCATCCTGCATGACTCCAACATCTTCAAGCACCCAGAAGA < 41bp 1 0.11262503606091 1 0.0672812461853027 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41711910 chr19:41711905 nonsynonymous SNV 0.007 1 16 hm5C_associated_SNPs_17078 0 0 0 0 2 CYP2S1 chr19:41711863 3'AG 41711863 Downstream 43bp
chr19 41711905 41711905 1 + C T BLCA 41711910 + 41711890 41711930 41 TCCATCCTGCATGACCCCAACATCTTCAAGCACCCAGAAGA TCCATCCTGCATGACTCCAACATCTTCAAGCACCCAGAAGA < 41bp 1 0.11262503606091 1 0.0672812461853027 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41711910 chr19:41711905 nonsynonymous SNV 0.007 1 16 hm5C_associated_SNPs_17078 0 0 0 0 2 CYP2S1 chr19:41712004 5'GT 41712004 Upstream 100bp
chrX 41201840 41201840 1 + G C BLCA 41201835 + 41201815 41201855 41 AAATTTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATC AAATTTGAACGTGGTGGAAACAGTCCCTGGTGTGACAAATC < 41bp 1 0.194521891134349 1 0.24224054813385 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201835 chrX:41201840 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_17081 0 0 1 0 2 DDX3X chrX:41201748 3'AG 41201748 Downstream 93bp
chrX 41201840 41201840 1 + G C BLCA 41201835 + 41201815 41201855 41 AAATTTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATC AAATTTGAACGTGGTGGAAACAGTCCCTGGTGTGACAAATC < 41bp 1 0.194521891134349 1 0.24224054813385 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201835 chrX:41201840 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_17081 0 0 1 0 2 DDX3X chrX:41201906 5'GT 41201906 Upstream 67bp
chrX 41201840 41201840 1 + G C BLCA 41201839 + 41201819 41201859 41 TTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATCAGAT TTGAACGTGGTGGAAACAGTCCCTGGTGTGACAAATCAGAT < 41bp 1 0.392736679162534 1 0.118065804243088 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201839 chrX:41201840 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_17082 0 0 1 0 2 DDX3X chrX:41201748 3'AG 41201748 Downstream 93bp
chrX 41201840 41201840 1 + G C BLCA 41201839 + 41201819 41201859 41 TTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATCAGAT TTGAACGTGGTGGAAACAGTCCCTGGTGTGACAAATCAGAT < 41bp 1 0.392736679162534 1 0.118065804243088 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201839 chrX:41201840 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_17082 0 0 1 0 2 DDX3X chrX:41201906 5'GT 41201906 Upstream 67bp
chrX 41201840 41201840 1 + G C BLCA 41201850 + 41201830 41201870 41 GGAAACAGTCGCTGGTGTGACAAATCAGATGAAGATGATTG GGAAACAGTCCCTGGTGTGACAAATCAGATGAAGATGATTG < 41bp 1 0.269617473306172 1 0.413865804672241 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201850 chrX:41201840 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_17083 0 0 1 0 2 DDX3X chrX:41201748 3'AG 41201748 Downstream 93bp
chrX 41201840 41201840 1 + G C BLCA 41201850 + 41201830 41201870 41 GGAAACAGTCGCTGGTGTGACAAATCAGATGAAGATGATTG GGAAACAGTCCCTGGTGTGACAAATCAGATGAAGATGATTG < 41bp 1 0.269617473306172 1 0.413865804672241 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201850 chrX:41201840 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_17083 0 0 1 0 2 DDX3X chrX:41201906 5'GT 41201906 Upstream 67bp
chrX 41201840 41201840 1 + G C BLCA 41201855 + 41201835 41201875 41 CAGTCGCTGGTGTGACAAATCAGATGAAGATGATTGGTCAA CAGTCCCTGGTGTGACAAATCAGATGAAGATGATTGGTCAA < 41bp 1 0.707688064106886 1 0.589717984199524 experiment 0.584623871786228 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201855 chrX:41201840 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_17084 0 0 1 0 2 DDX3X chrX:41201748 3'AG 41201748 Downstream 93bp
chrX 41201840 41201840 1 + G C BLCA 41201855 + 41201835 41201875 41 CAGTCGCTGGTGTGACAAATCAGATGAAGATGATTGGTCAA CAGTCCCTGGTGTGACAAATCAGATGAAGATGATTGGTCAA < 41bp 1 0.707688064106886 1 0.589717984199524 experiment 0.584623871786228 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201855 chrX:41201840 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_17084 0 0 1 0 2 DDX3X chrX:41201906 5'GT 41201906 Upstream 67bp
chr7 128846180 128846180 1 + C T BLCA 128846171 + 128846151 128846191 41 CACCTGCTCACCTGGTCACTCCCCTTTGTCCTCACTGTGGC CACCTGCTCACCTGGTCACTCCCCTTTGTTCTCACTGTGGC < 41bp 1 0.196287980593114 1 0.0816692411899567 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMO ENSG00000128602 CDS Human protein_coding chr7:128846171 chr7:128846180 synonymous SNV . 0 30 hm5C_associated_SNPs_17085 0 0 1 0 1 SMO chr7:128846210 5'GT 128846210 Upstream 31bp
chr7 100151733 100151733 1 + C T BLCA 100151721 + 100151701 100151741 41 TCCTTCTCCTCCAAGCCCGTCAGTCAGTCTCACGCTCGGAC TCCTTCTCCTCCAAGCCCGTCAGTCAGTCTCATGCTCGGAC < 41bp 1 0.0426070517715215 1 0.0263087153434753 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGFG2 ENSG00000106351 CDS Human protein_coding chr7:100151721 chr7:100151733 synonymous SNV . 0 33 hm5C_associated_SNPs_17086 0 0 1 0 1 AGFG2 chr7:100151716 3'AG 100151716 Downstream 18bp
chr2 220503588 220503588 1 + C G BLCA 220503571 + 220503551 220503591 41 CTCGTCCTCATCCTGATCTTCATGGAGACACAGATCACGGC CTCGTCCTCATCCTGATCTTCATGGAGACACAGATCAGGGC < 41bp 1 0.372887948815456 1 0.43029510974884 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220503571 chr2:220503588 nonsynonymous SNV 0.904 5 38 hm5C_associated_SNPs_17087 0 0 0 0 1 SLC4A3 chr2:220503591 5'GT 220503591 Upstream 4bp
chr11 122817458 122817458 1 + A G BLCA 122817446 + 122817426 122817466 41 AGCCGTAGCAATTCTGAAGGCTATCTGTTTCAACTGGAAAA AGCCGTAGCAATTCTGAAGGCTATCTGTTTCAGCTGGAAAA < 41bp 1 0.103531105015943 1 0.086270660161972 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122817446 chr11:122817458 synonymous SNV . 0 33 hm5C_associated_SNPs_17088 0 0 0 0 1 C11orf63 chr11:122817500 5'GT 122817500 Upstream 43bp
chr1 220928391 220928391 1 + C T BLCA 220928383 + 220928363 220928403 41 TCATTTATGAGAATAACTGCCTGATCTTCAGGGCTCCAGAC TCATTTATGAGAATAACTGCCTGATCTTTAGGGCTCCAGAC < 41bp 1 0.434324503207351 1 0.0650050044059753 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC2 ENSG00000117791 CDS Human protein_coding chr1:220928383 chr1:220928391 synonymous SNV . 0 29 hm5C_associated_SNPs_17089 0 0 1 0 1 MARC2 chr1:220928462 5'GT 220928462 Upstream 72bp
chr1 220928391 220928391 1 + C T BLCA 220928388 + 220928368 220928408 41 TATGAGAATAACTGCCTGATCTTCAGGGCTCCAGACATGGA TATGAGAATAACTGCCTGATCTTTAGGGCTCCAGACATGGA < 41bp 1 0.5123775431495 1 0.133397251367569 experiment 0.975244913700999 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC2 ENSG00000117791 CDS Human protein_coding chr1:220928388 chr1:220928391 synonymous SNV . 0 24 hm5C_associated_SNPs_17090 0 0 1 0 1 MARC2 chr1:220928462 5'GT 220928462 Upstream 72bp
chr22 50861948 50861948 1 + C T BLCA 50861963 + 50861943 50861983 41 CCCGTCTGCATGGCGCCCGCCTCATGGCAGCACTGCTGCAC CCCGTTTGCATGGCGCCCGCCTCATGGCAGCACTGCTGCAC < 41bp 1 0.489670938709031 1 0.203811168670654 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50861963 chr22:50861948 synonymous SNV . 0 6 hm5C_associated_SNPs_17091 0 0 1 0 2 PPP6R2 chr22:50861891 3'AG 50861891 Downstream 58bp
chr22 50861948 50861948 1 + C T BLCA 50861963 + 50861943 50861983 41 CCCGTCTGCATGGCGCCCGCCTCATGGCAGCACTGCTGCAC CCCGTTTGCATGGCGCCCGCCTCATGGCAGCACTGCTGCAC < 41bp 1 0.489670938709031 1 0.203811168670654 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50861963 chr22:50861948 synonymous SNV . 0 6 hm5C_associated_SNPs_17091 0 0 1 0 2 PPP6R2 chr22:50862043 5'GT 50862043 Upstream 96bp
chrX 153608140 153608140 1 + C G BLCA 153608138 + 153608118 153608158 41 CCCAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA CCCAGCTCGTCCGCCGCCTCCTGTTATAGCTTCTCTGGTGA < 41bp 1 0.481468983227885 1 0.118152350187302 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608138 chrX:153608140 nonsynonymous SNV 0.023 2 23 hm5C_associated_SNPs_17092 0 0 1 0 2 EMD chrX:153608050 3'AG 153608050 Downstream 91bp
chrX 153608140 153608140 1 + C G BLCA 153608138 + 153608118 153608158 41 CCCAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA CCCAGCTCGTCCGCCGCCTCCTGTTATAGCTTCTCTGGTGA < 41bp 1 0.481468983227885 1 0.118152350187302 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608138 chrX:153608140 nonsynonymous SNV 0.023 2 23 hm5C_associated_SNPs_17092 0 0 1 0 2 EMD chrX:153608154 5'GT 153608154 Upstream 15bp
chr9 78772065 78772065 1 + G A BLCA 78772063 + 78772043 78772083 41 GCACGTGTGTGTGGAGAGCACAGACCGACAAATCAAGTAAT GCACGTGTGTGTGGAGAGCACAAACCGACAAATCAAGTAAT < 41bp 1 0.14673469294358 1 0.248692393302917 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78772063 chr9:78772065 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_17093 0 0 0 0 1 PCSK5 chr9:78772078 5'GT 78772078 Upstream 14bp
chr17 40646475 40646475 1 + A G BLCA 40646461 + 40646441 40646481 41 TGGATGGTACTGAGGGAGAGCCGGATCCTTTCCCAGAAGAA TGGATGGTACTGAGGGAGAGCCGGATCCTTTCCCGGAAGAA < 41bp 1 0.504101486532507 1 0.426275432109833 experiment 0.991797026934986 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40646461 chr17:40646475 nonsynonymous SNV 0.999 2 35 hm5C_associated_SNPs_17095 0 0 1 0 1 ATP6V0A1 chr17:40646491 5'GT 40646491 Upstream 17bp
chr2 135883809 135883809 1 + G A BLCA 135883796 + 135883776 135883816 41 CCTCATCTGACCGAAGGGATCATTGTGGATAATGATGTTTA CCTCATCTGACCGAAGGGATCATTGTGGATAATAATGTTTA < 41bp 1 0.137951268553952 1 0.0823842585086823 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RAB3GAP1 ENSG00000115839 CDS Human protein_coding chr2:135883796 chr2:135883809 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_17097 0 0 1 0 2 RAB3GAP1 chr2:135883751 3'AG 135883751 Downstream 59bp
chr2 135883809 135883809 1 + G A BLCA 135883796 + 135883776 135883816 41 CCTCATCTGACCGAAGGGATCATTGTGGATAATGATGTTTA CCTCATCTGACCGAAGGGATCATTGTGGATAATAATGTTTA < 41bp 1 0.137951268553952 1 0.0823842585086823 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RAB3GAP1 ENSG00000115839 CDS Human protein_coding chr2:135883796 chr2:135883809 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_17097 0 0 1 0 2 RAB3GAP1 chr2:135883819 5'GT 135883819 Upstream 11bp
chr10 17277345 17277345 1 + G C BLCA 17277353 + 17277333 17277373 41 GCCCTTGACATTGAGATTGCCACCTACAGGAAGCTGCTGGA GCCCTTGACATTCAGATTGCCACCTACAGGAAGCTGCTGGA < 41bp 1 0.345082666246274 1 0.17715921998024 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277353 chr10:17277345 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_17098 0 0 1 1 1 VIM chr10:17277388 5'GT 17277388 Upstream 44bp
chr10 17277345 17277345 1 + G C BLCA 17277356 + 17277336 17277376 41 CTTGACATTGAGATTGCCACCTACAGGAAGCTGCTGGAAGG CTTGACATTCAGATTGCCACCTACAGGAAGCTGCTGGAAGG < 41bp 1 0.760548568791696 1 0.683423578739166 experiment 0.478902862416609 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277356 chr10:17277345 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_17099 0 0 1 1 1 VIM chr10:17277388 5'GT 17277388 Upstream 44bp
chr20 47605103 47605103 1 + G A BLCA 47605120 + 47605100 47605140 41 GAAGAGTATCTCTCAAGCATCTATGAAGAGATAGAAGGCAA GAAAAGTATCTCTCAAGCATCTATGAAGAGATAGAAGGCAA < 41bp 1 0.209718563365088 1 0.159062772989273 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47605120 chr20:47605103 nonsynonymous SNV 0.983 3 4 hm5C_associated_SNPs_17100 0 0 1 0 1 ARFGEF2 chr20:47605028 3'AG 47605028 Downstream 76bp
chr9 33313681 33313681 1 + C T BLCA 33313662 + 33313642 33313682 41 GTCTTTACAGGCACACAGTTCGCTGTGGTCAGGCTGTCTCA GTCTTTACAGGCACACAGTTCGCTGTGGTCAGGCTGTCTTA < 41bp 1 0.45104910767639 1 0.409150034189224 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33313662 chr9:33313681 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_17102 0 0 1 0 1 NFX1 chr9:33313652 3'AG 33313652 Downstream 30bp
chr1 153701122 153701122 1 + G A BLCA 153701109 + 153701089 153701129 41 TTCCCGGCTCCTGGCTGCAGCCATGGAGTTGCAGAAGGGAA TTCCCGGCTCCTGGCTGCAGCCATGGAGTTGCAAAAGGGAA < 41bp 1 0.114349902711986 1 0.325773477554321 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control INTS3 ENSG00000143624 CDS Human protein_coding chr1:153701109 chr1:153701122 synonymous SNV . 0 34 hm5C_associated_SNPs_17103 0 0 0 0 1 INTS3 chr1:153701029 3'AG 153701029 Downstream 94bp
chr10 135197564 135197564 1 + C T BLCA 135197583 + 135197563 135197603 41 TCTTCCTGGAGTTTGAGGAGCCCTTCTGGGAGCCAGACTGC TTTTCCTGGAGTTTGAGGAGCCCTTCTGGGAGCCAGACTGC < 41bp 1 0.0574971961780728 1 0.0325770974159241 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PAOX ENSG00000148832 CDS Human protein_coding chr10:135197583 chr10:135197564 synonymous SNV . 0 2 hm5C_associated_SNPs_17104 0 0 0 1 1 PAOX chr10:135197474 3'AG 135197474 Downstream 91bp
chr6 44221299 44221299 1 + C T BLCA 44221288 + 44221268 44221308 41 CAGTTCCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGAT CAGTTCCTGATGAGATCCCCCCTCTCGAGGGTGATGAGGAT < 41bp 1 0.0518558921969372 1 0.0597387552261353 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44221288 chr6:44221299 synonymous SNV . 0 32 hm5C_associated_SNPs_17105 0 0 1 0 1 HSP90AB1 chr6:44221226 3'AG 44221226 Downstream 74bp
chr6 44221299 44221299 1 + C T BLCA 44221289 + 44221269 44221309 41 AGTTCCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGATG AGTTCCTGATGAGATCCCCCCTCTCGAGGGTGATGAGGATG < 41bp 1 0.222625194867409 1 0.182693898677826 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44221289 chr6:44221299 synonymous SNV . 0 31 hm5C_associated_SNPs_17106 0 0 1 0 1 HSP90AB1 chr6:44221226 3'AG 44221226 Downstream 74bp
chrX 123224564 123224564 1 + G A BLCA 123224558 + 123224538 123224578 41 AGATTACGGCCTGAGGATAGCTTCATGAGTGTTTATCCAAT AGATTACGGCCTGAGGATAGCTTCATAAGTGTTTATCCAAT < 41bp 1 0.476227110201939 1 0.141875803470612 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123224558 chrX:123224564 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_17109 0 0 1 0 1 STAG2 chrX:123224614 5'GT 123224614 Upstream 51bp
chr2 241513629 241513629 1 + C T BLCA 241513620 + 241513600 241513640 41 ATCTCCTCCATCCTGGAGAGCGATGAGTTCCTGGTCATCGA ATCTCCTCCATCCTGGAGAGCGATGAGTTTCTGGTCATCGA < 41bp 1 0.163828562249076 1 0.065881609916687 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241513620 chr2:241513629 synonymous SNV . 0 30 hm5C_associated_SNPs_17110 0 0 1 0 1 RNPEPL1 chr2:241513530 3'AG 241513530 Downstream 100bp
chr16 50655557 50655557 1 + G A BLCA 50655547 + 50655527 50655567 41 GAGAAGACTGACGGGCTGGGCAGCGGAGATGAGAAGAAGAT GAGAAGACTGACGGGCTGGGCAGCGGAGATAAGAAGAAGAT < 41bp 1 0.517512744226114 1 0.556674003601074 experiment 0.964974511547771 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NKD1 ENSG00000140807 CDS Human protein_coding chr16:50655547 chr16:50655557 nonsynonymous SNV 0.845 2 31 hm5C_associated_SNPs_17112 0 0 1 0 2 NKD1 chr16:50655513 3'AG 50655513 Downstream 45bp
chr16 50655557 50655557 1 + G A BLCA 50655547 + 50655527 50655567 41 GAGAAGACTGACGGGCTGGGCAGCGGAGATGAGAAGAAGAT GAGAAGACTGACGGGCTGGGCAGCGGAGATAAGAAGAAGAT < 41bp 1 0.517512744226114 1 0.556674003601074 experiment 0.964974511547771 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NKD1 ENSG00000140807 CDS Human protein_coding chr16:50655547 chr16:50655557 nonsynonymous SNV 0.845 2 31 hm5C_associated_SNPs_17112 0 0 1 0 2 NKD1 chr16:50655619 5'GT 50655619 Upstream 63bp
chr11 33628221 33628221 1 + A G BLCA 33628214 + 33628194 33628234 41 GAGTGACGAAGAGGAGGGAGCGGTTCTATTTGACAACTCCA GAGTGACGAAGAGGAGGGAGCGGTTCTGTTTGACAACTCCA < 41bp 1 0.122352352450533 1 0.203569382429123 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33628214 chr11:33628221 synonymous SNV . 0 28 hm5C_associated_SNPs_17113 0 0 0 0 1 KIAA1549L chr11:33628187 3'AG 33628187 Downstream 35bp
chr20 57466824 57466824 1 + G A BLCA 57466815 + 57466795 57466835 41 GGAACAGTAAGACCGAGGACCAGCGCAACGAGGAGAAGGCG GGAACAGTAAGACCGAGGACCAGCGCAACAAGGAGAAGGCG < 41bp 1 0.482753816134225 1 0.75343906879425 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57466815 chr20:57466824 nonsynonymous SNV 0.995 1 30 hm5C_associated_SNPs_17115 0 0 1 0 1 GNAS chr20:57466920 5'GT 57466920 Upstream 97bp
chr20 57466824 57466824 1 + G A BLCA 57466818 + 57466798 57466838 41 ACAGTAAGACCGAGGACCAGCGCAACGAGGAGAAGGCGCAG ACAGTAAGACCGAGGACCAGCGCAACAAGGAGAAGGCGCAG < 41bp 1 0.644035116866341 1 0.70184326171875 experiment 0.711929766267317 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57466818 chr20:57466824 nonsynonymous SNV 0.995 1 27 hm5C_associated_SNPs_17116 0 0 1 0 1 GNAS chr20:57466920 5'GT 57466920 Upstream 97bp
chr9 127101893 127101893 1 + C T BLCA 127101884 + 127101864 127101904 41 TACATGTCACCGGAGAGGATCCATGAGAACGGCTACAACTT TACATGTCACCGGAGAGGATCCATGAGAATGGCTACAACTT < 41bp 1 0.0844329715483351 1 0.0287351310253143 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NEK6 ENSG00000119408 CDS Human protein_coding chr9:127101884 chr9:127101893 synonymous SNV . 0 30 hm5C_associated_SNPs_17117 0 0 1 0 2 NEK6 chr9:127101850 3'AG 127101850 Downstream 44bp
chr9 127101893 127101893 1 + C T BLCA 127101884 + 127101864 127101904 41 TACATGTCACCGGAGAGGATCCATGAGAACGGCTACAACTT TACATGTCACCGGAGAGGATCCATGAGAATGGCTACAACTT < 41bp 1 0.0844329715483351 1 0.0287351310253143 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NEK6 ENSG00000119408 CDS Human protein_coding chr9:127101884 chr9:127101893 synonymous SNV . 0 30 hm5C_associated_SNPs_17117 0 0 1 0 2 NEK6 chr9:127101944 5'GT 127101944 Upstream 52bp
chr8 121259915 121259915 1 + C T BLCA 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTATGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA < 41bp 1 0.075377417905463 1 0.0722400546073914 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259915 nonsynonymous SNV 0.996 2 6 hm5C_associated_SNPs_17118 0 0 0 0 2 COL14A1 chr8:121259852 3'AG 121259852 Downstream 64bp
chr8 121259915 121259915 1 + C T BLCA 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTATGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA < 41bp 1 0.075377417905463 1 0.0722400546073914 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259915 nonsynonymous SNV 0.996 2 6 hm5C_associated_SNPs_17118 0 0 0 0 2 COL14A1 chr8:121259974 5'GT 121259974 Upstream 60bp
chr8 121259915 121259915 1 + C T BLCA 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ATGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT < 41bp 1 0.376274832210997 1 0.151404619216919 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259915 nonsynonymous SNV 0.996 2 2 hm5C_associated_SNPs_17119 0 0 0 0 2 COL14A1 chr8:121259852 3'AG 121259852 Downstream 64bp
chr8 121259915 121259915 1 + C T BLCA 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ATGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT < 41bp 1 0.376274832210997 1 0.151404619216919 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259915 nonsynonymous SNV 0.996 2 2 hm5C_associated_SNPs_17119 0 0 0 0 2 COL14A1 chr8:121259974 5'GT 121259974 Upstream 60bp
chr15 89172609 89172609 1 + G A BLCA 89172606 + 89172586 89172626 41 CCCGGCCTCCACACCCGGGCCCGGGTCTCTCTAAAGGACCT CCCGGCCTCCACACCCGGGCCCGAGTCTCTCTAAAGGACCT < 41bp 1 0.189761714067791 1 0.121757656335831 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AEN ENSG00000181026 CDS Human protein_coding chr15:89172606 chr15:89172609 synonymous SNV . 0 24 hm5C_associated_SNPs_17120 0 0 1 0 1 AEN chr15:89172657 5'GT 89172657 Upstream 49bp
chr19 36216719 36216719 1 + G A BLCA 36216704 + 36216684 36216724 41 TATCCAACCCGGGCCACGCGCAAACGGCGCCACTGGGTGAG TATCCAACCCGGGCCACGCGCAAACGGCGCCACTGAGTGAG < 41bp 1 0.152675606119282 1 0.395065158605576 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216704 chr19:36216719 stopgain 1.000 1 36 hm5C_associated_SNPs_17122 0 0 0 0 2 KMT2B chr19:36216624 3'AG 36216624 Downstream 96bp
chr19 36216719 36216719 1 + G A BLCA 36216704 + 36216684 36216724 41 TATCCAACCCGGGCCACGCGCAAACGGCGCCACTGGGTGAG TATCCAACCCGGGCCACGCGCAAACGGCGCCACTGAGTGAG < 41bp 1 0.152675606119282 1 0.395065158605576 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216704 chr19:36216719 stopgain 1.000 1 36 hm5C_associated_SNPs_17122 0 0 0 0 2 KMT2B chr19:36216719 5'GT 36216719 Upstream 1bp
chr1 145518173 145518173 1 + A G BLCA 145518156 + 145518136 145518176 41 GTTGTCCTGAGATTCTGCATCACTGTTAGTCACCTCAATCG GTTGTCCTGAGATTCTGCATCACTGTTAGTCACCTCAGTCG < 41bp 1 0.228927719353061 1 0.0464172661304474 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PEX11B ENSG00000131779 CDS Human protein_coding chr1:145518156 chr1:145518173 nonsynonymous SNV . 0 38 hm5C_associated_SNPs_17123 0 0 1 0 1 PEX11B chr1:145518272 5'GT 145518272 Upstream 100bp
chr3 47447452 47447452 1 + C T BLCA 47447468 + 47447448 47447488 41 CCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGC CCTTTGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGC < 41bp 1 0.0685493337336398 1 0.0189373195171356 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47447468 chr3:47447452 synonymous SNV . 0 5 hm5C_associated_SNPs_17124 0 0 1 0 3 PTPN23 chr3:47447405 3'AG 47447405 Downstream 48bp
chr3 47447452 47447452 1 + C T BLCA 47447468 + 47447448 47447488 41 CCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGC CCTTTGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGC < 41bp 1 0.0685493337336398 1 0.0189373195171356 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47447468 chr3:47447452 synonymous SNV . 0 5 hm5C_associated_SNPs_17124 0 0 1 0 3 PTPN23 chr3:47447435 3'AG 47447435 Downstream 18bp
chr3 47447452 47447452 1 + C T BLCA 47447468 + 47447448 47447488 41 CCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGC CCTTTGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGC < 41bp 1 0.0685493337336398 1 0.0189373195171356 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47447468 chr3:47447452 synonymous SNV . 0 5 hm5C_associated_SNPs_17124 0 0 1 0 3 PTPN23 chr3:47447536 5'GT 47447536 Upstream 85bp
chr19 2271908 2271908 1 + A G BLCA 2271919 + 2271899 2271939 41 GCAGCCTCTACATCGAGATCCCGGGCGGCGCGCTGCCCGAG GCAGCCTCTGCATCGAGATCCCGGGCGGCGCGCTGCCCGAG < 41bp 1 0.747699047860905 1 0.908930063247681 experiment 0.50460190427819 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control OAZ1 ENSG00000104904 CDS Human protein_coding chr19:2271919 chr19:2271908 nonsynonymous SNV 0.956 3 10 hm5C_associated_SNPs_17125 0 0 1 0 1 OAZ1 chr19:2271953 5'GT 2271953 Upstream 46bp
chr1 206653236 206653236 1 + G A BLCA 206653240 + 206653220 206653260 41 GGACGTCCCCAAGTTCGTCCCCAAAGTGGACCTGCAGGCGG GGACGTCCCCAAGTTCATCCCCAAAGTGGACCTGCAGGCGG < 41bp 1 0.481202933295624 1 0.387946605682373 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IKBKE ENSG00000143466 CDS Human other chr1:206653240 chr1:206653236 nonsynonymous SNV 0.874 0 17 hm5C_associated_SNPs_17127 0 0 1 0 2 IKBKE chr1:206653213 3'AG 206653213 Downstream 24bp
chr1 206653236 206653236 1 + G A BLCA 206653240 + 206653220 206653260 41 GGACGTCCCCAAGTTCGTCCCCAAAGTGGACCTGCAGGCGG GGACGTCCCCAAGTTCATCCCCAAAGTGGACCTGCAGGCGG < 41bp 1 0.481202933295624 1 0.387946605682373 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IKBKE ENSG00000143466 CDS Human other chr1:206653240 chr1:206653236 nonsynonymous SNV 0.874 0 17 hm5C_associated_SNPs_17127 0 0 1 0 2 IKBKE chr1:206653277 5'GT 206653277 Upstream 42bp
chr5 149758896 149758896 1 + G A BLCA 149758892 + 149758872 149758912 41 CGTGGCTACAGCAGCTCAGGCCCAGACAGGGCCAGAGGAGG CGTGGCTACAGCAGCTCAGGCCCAAACAGGGCCAGAGGAGG < 41bp 1 0.136543402182519 1 0.39550369977951 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149758892 chr5:149758896 synonymous SNV . 0 25 hm5C_associated_SNPs_17128 0 0 1 0 1 TCOF1 chr5:149758971 5'GT 149758971 Upstream 76bp
chr5 149758896 149758896 1 + G A BLCA 149758893 + 149758873 149758913 41 GTGGCTACAGCAGCTCAGGCCCAGACAGGGCCAGAGGAGGA GTGGCTACAGCAGCTCAGGCCCAAACAGGGCCAGAGGAGGA < 41bp 1 0.0950905866083438 1 0.254747807979584 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149758893 chr5:149758896 synonymous SNV . 0 24 hm5C_associated_SNPs_17129 0 0 1 0 1 TCOF1 chr5:149758971 5'GT 149758971 Upstream 76bp
chr5 149758896 149758896 1 + G A BLCA 149758894 + 149758874 149758914 41 TGGCTACAGCAGCTCAGGCCCAGACAGGGCCAGAGGAGGAC TGGCTACAGCAGCTCAGGCCCAAACAGGGCCAGAGGAGGAC < 41bp 1 0.0800589172248114 1 0.303800821304321 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149758894 chr5:149758896 synonymous SNV . 0 23 hm5C_associated_SNPs_17130 0 0 1 0 1 TCOF1 chr5:149758971 5'GT 149758971 Upstream 76bp
chr5 149758896 149758896 1 + G A BLCA 149758903 + 149758883 149758923 41 CAGCTCAGGCCCAGACAGGGCCAGAGGAGGACTCAGGGAGC CAGCTCAGGCCCAAACAGGGCCAGAGGAGGACTCAGGGAGC < 41bp 1 0.289723173510097 1 0.541335105895996 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149758903 chr5:149758896 synonymous SNV . 0 14 hm5C_associated_SNPs_17131 0 0 1 0 1 TCOF1 chr5:149758971 5'GT 149758971 Upstream 76bp
chr5 149758896 149758896 1 + G A BLCA 149758914 + 149758894 149758934 41 CAGACAGGGCCAGAGGAGGACTCAGGGAGCAGTGAGGAGGA CAAACAGGGCCAGAGGAGGACTCAGGGAGCAGTGAGGAGGA < 41bp 1 0.500976300045705 1 0.5937260389328 experiment 0.998047399908589 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149758914 chr5:149758896 synonymous SNV . 0 3 hm5C_associated_SNPs_17132 0 0 1 0 1 TCOF1 chr5:149758971 5'GT 149758971 Upstream 76bp
chr5 149758896 149758896 1 + G A BLCA 149758916 + 149758896 149758936 41 GACAGGGCCAGAGGAGGACTCAGGGAGCAGTGAGGAGGAGT AACAGGGCCAGAGGAGGACTCAGGGAGCAGTGAGGAGGAGT < 41bp 1 0.730465431260613 1 0.938269913196564 experiment 0.539069137478773 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149758916 chr5:149758896 synonymous SNV . 0 1 hm5C_associated_SNPs_17133 0 0 1 0 1 TCOF1 chr5:149758971 5'GT 149758971 Upstream 76bp
chr11 65055264 65055264 1 + G A BLCA 65055284 + 65055264 65055304 41 GACCTGATTGCTGTCATCAACCATGACCGGCCAGATGTCTG AACCTGATTGCTGTCATCAACCATGACCGGCCAGATGTCTG < 41bp 1 0.111400751825912 1 0.160529851913452 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control POLA2 ENSG00000014138 CDS Human protein_coding chr11:65055284 chr11:65055264 nonsynonymous SNV 0.829 4 1 hm5C_associated_SNPs_17134 0 0 1 0 2 POLA2 chr11:65055187 3'AG 65055187 Downstream 78bp
chr11 65055264 65055264 1 + G A BLCA 65055284 + 65055264 65055304 41 GACCTGATTGCTGTCATCAACCATGACCGGCCAGATGTCTG AACCTGATTGCTGTCATCAACCATGACCGGCCAGATGTCTG < 41bp 1 0.111400751825912 1 0.160529851913452 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control POLA2 ENSG00000014138 CDS Human protein_coding chr11:65055284 chr11:65055264 nonsynonymous SNV 0.829 4 1 hm5C_associated_SNPs_17134 0 0 1 0 2 POLA2 chr11:65055311 5'GT 65055311 Upstream 48bp
chr22 38021890 38021890 1 + G A BLCA 38021903 + 38021883 38021923 41 CCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAG CCCTGGCAAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAG < 41bp 1 0.631578930452668 1 0.067538857460022 experiment 0.736842139094665 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38021903 chr22:38021890 nonsynonymous SNV 0.004 0 8 hm5C_associated_SNPs_17135 0 0 1 0 2 GGA1 chr22:38021804 3'AG 38021804 Downstream 87bp
chr22 38021890 38021890 1 + G A BLCA 38021903 + 38021883 38021923 41 CCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAG CCCTGGCAAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAG < 41bp 1 0.631578930452668 1 0.067538857460022 experiment 0.736842139094665 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38021903 chr22:38021890 nonsynonymous SNV 0.004 0 8 hm5C_associated_SNPs_17135 0 0 1 0 2 GGA1 chr22:38021956 5'GT 38021956 Upstream 67bp
chr6 7578018 7578018 1 + G C BLCA 7578027 + 7578007 7578047 41 TGCAGGATTATGAGCTCCAGCTGGCCTCATACACCTCAGGA TGCAGGATTATCAGCTCCAGCTGGCCTCATACACCTCAGGA < 41bp 1 0.234624771714775 1 0.553164958953857 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DSP ENSG00000096696 CDS Human protein_coding chr6:7578027 chr6:7578018 nonsynonymous SNV 0.999 4 12 hm5C_associated_SNPs_17136 0 0 1 0 1 DSP chr6:7578012 3'AG 7578012 Downstream 7bp
chr20 55049784 55049784 1 + A T BLCA 55049773 + 55049753 55049793 41 GTCATTGAATTTCTCTTGGACAAATCTGCAGAAAAGGCTCT GTCATTGAATTTCTCTTGGACAAATCTGCAGTAAAGGCTCT < 41bp 1 0.138341324472692 1 0.20772659778595 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55049773 chr20:55049784 nonsynonymous SNV 0.999 2 32 hm5C_associated_SNPs_17137 0 0 1 0 2 RTFDC1 chr20:55049734 3'AG 55049734 Downstream 51bp
chr20 55049784 55049784 1 + A T BLCA 55049773 + 55049753 55049793 41 GTCATTGAATTTCTCTTGGACAAATCTGCAGAAAAGGCTCT GTCATTGAATTTCTCTTGGACAAATCTGCAGTAAAGGCTCT < 41bp 1 0.138341324472692 1 0.20772659778595 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55049773 chr20:55049784 nonsynonymous SNV 0.999 2 32 hm5C_associated_SNPs_17137 0 0 1 0 2 RTFDC1 chr20:55049827 5'GT 55049827 Upstream 44bp
chr20 55049783 55049783 1 + G A BLCA 55049773 + 55049753 55049793 41 GTCATTGAATTTCTCTTGGACAAATCTGCAGAAAAGGCTCT GTCATTGAATTTCTCTTGGACAAATCTGCAAAAAAGGCTCT < 41bp 1 0.138337384988764 1 0.158275634050369 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55049773 chr20:55049783 nonsynonymous SNV 0.997 1 31 hm5C_associated_SNPs_17138 0 0 1 0 2 RTFDC1 chr20:55049734 3'AG 55049734 Downstream 50bp
chr20 55049783 55049783 1 + G A BLCA 55049773 + 55049753 55049793 41 GTCATTGAATTTCTCTTGGACAAATCTGCAGAAAAGGCTCT GTCATTGAATTTCTCTTGGACAAATCTGCAAAAAAGGCTCT < 41bp 1 0.138337384988764 1 0.158275634050369 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55049773 chr20:55049783 nonsynonymous SNV 0.997 1 31 hm5C_associated_SNPs_17138 0 0 1 0 2 RTFDC1 chr20:55049827 5'GT 55049827 Upstream 45bp
chr3 184021746 184021746 1 + T C BLCA 184021744 + 184021724 184021764 41 GCTCTTTGTAGTCAGGAGCTCTTCTTGCCTGTGGCATAGTG GCTCTTTGTAGTCAGGAGCTCTCCTTGCCTGTGGCATAGTG < 41bp 1 0.39542540178574 1 0.476438522338867 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184021744 chr3:184021746 synonymous SNV . 0 23 hm5C_associated_SNPs_17140 0 0 1 0 1 PSMD2 chr3:184021735 3'AG 184021735 Downstream 12bp
chr7 76110031 76110031 1 + G C BLCA 76110024 + 76110004 76110044 41 GCCCACAGCATCCCCTTGGGCCAGGCAGACCCCTCGCTGGC GCCCACAGCATCCCCTTGGGCCAGGCACACCCCTCGCTGGC < 41bp 1 0.419591015506493 1 0.4757339656353 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110024 chr7:76110031 nonsynonymous SNV 0.998 4 28 hm5C_associated_SNPs_17141 0 0 0 0 1 DTX2 chr7:76110094 5'GT 76110094 Upstream 64bp
chr7 76110031 76110031 1 + G C BLCA 76110025 + 76110005 76110045 41 CCCACAGCATCCCCTTGGGCCAGGCAGACCCCTCGCTGGCC CCCACAGCATCCCCTTGGGCCAGGCACACCCCTCGCTGGCC < 41bp 1 0.327068568127898 1 0.395050078630447 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110025 chr7:76110031 nonsynonymous SNV 0.998 4 27 hm5C_associated_SNPs_17142 0 0 0 0 1 DTX2 chr7:76110094 5'GT 76110094 Upstream 64bp
chr7 76110031 76110031 1 + G C BLCA 76110029 + 76110009 76110049 41 CAGCATCCCCTTGGGCCAGGCAGACCCCTCGCTGGCCCCTT CAGCATCCCCTTGGGCCAGGCACACCCCTCGCTGGCCCCTT < 41bp 1 0.15600869690561 1 0.174778074026108 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110029 chr7:76110031 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_17143 0 0 0 0 1 DTX2 chr7:76110094 5'GT 76110094 Upstream 64bp
chr9 78506220 78506220 1 + C G BLCA 78506235 + 78506215 78506255 41 GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT GCAGTGAAAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT < 41bp 1 0.0590378842348407 1 0.0631242990493774 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78506235 chr9:78506220 synonymous SNV . 0 6 hm5C_associated_SNPs_17146 0 0 1 0 1 PCSK5 chr9:78506289 5'GT 78506289 Upstream 70bp
chr16 70564782 70564782 1 + G C BLCA 70564775 + 70564755 70564795 41 CATGTAGTTGGAGTAGATGTCGGATTTGAAAATCCAATGTT CATGTAGTTGGAGTAGATGTCGGATTTCAAAATCCAATGTT < 41bp 1 0.457049664809952 1 0.7046138048172 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70564775 chr16:70564782 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_17147 0 0 1 0 1 SF3B3 chr16:70564820 5'GT 70564820 Upstream 39bp
chr1 154317147 154317147 1 + C T BLCA 154317162 + 154317142 154317182 41 TCATCCCGCTCCGTAGGCAACGGCTTCACCTATCAGGACAA TCATCTCGCTCCGTAGGCAACGGCTTCACCTATCAGGACAA < 41bp 1 0.360219066408147 1 0.415726780891418 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154317162 chr1:154317147 synonymous SNV . 0 6 hm5C_associated_SNPs_17148 0 0 1 0 1 ATP8B2 chr1:154317117 3'AG 154317117 Downstream 31bp
chr11 6962820 6962820 1 + C G BLCA 6962809 + 6962789 6962829 41 TCATCTTCCTCAGATATGCCCTGCAAGGACTCTGCCCTGCA TCATCTTCCTCAGATATGCCCTGCAAGGACTGTGCCCTGCA < 41bp 1 0.722382072478837 1 0.407717406749725 experiment 0.555235855042326 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF215 ENSG00000149054 CDS Human protein_coding chr11:6962809 chr11:6962820 nonsynonymous SNV 0.213 3 32 hm5C_associated_SNPs_17149 0 0 1 0 2 ZNF215 chr11:6962802 3'AG 6962802 Downstream 19bp
chr11 6962820 6962820 1 + C G BLCA 6962809 + 6962789 6962829 41 TCATCTTCCTCAGATATGCCCTGCAAGGACTCTGCCCTGCA TCATCTTCCTCAGATATGCCCTGCAAGGACTGTGCCCTGCA < 41bp 1 0.722382072478837 1 0.407717406749725 experiment 0.555235855042326 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF215 ENSG00000149054 CDS Human protein_coding chr11:6962809 chr11:6962820 nonsynonymous SNV 0.213 3 32 hm5C_associated_SNPs_17149 0 0 1 0 2 ZNF215 chr11:6962884 5'GT 6962884 Upstream 65bp
chr18 13056643 13056643 1 + G A BLCA 13056650 + 13056630 13056670 41 TCCTGTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCAT TCCTGTGCCGTCTATTGGTACAAACTGTGGAATTGAACCAT < 41bp 1 0.0936724991858668 1 0.259611248970032 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056650 chr18:13056643 nonsynonymous SNV 0.001 0 14 hm5C_associated_SNPs_17152 0 0 1 0 1 CEP192 chr18:13056697 5'GT 13056697 Upstream 55bp
chr18 13056643 13056643 1 + G A BLCA 13056654 + 13056634 13056674 41 GTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCATGGGA GTGCCGTCTATTGGTACAAACTGTGGAATTGAACCATGGGA < 41bp 1 0.281822346704594 1 0.185627490282059 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056654 chr18:13056643 nonsynonymous SNV 0.001 0 10 hm5C_associated_SNPs_17153 0 0 1 0 1 CEP192 chr18:13056697 5'GT 13056697 Upstream 55bp
chr10 75520579 75520579 1 + G A BLCA 75520570 + 75520550 75520590 41 TGGGCCTCCTCAGCCACTGCCTCCTAAGCGCCTGGACCCTG TGGGCCTCCTCAGCCACTGCCTCCTAAGCACCTGGACCCTG < 41bp 1 0.41364640303546 1 0.497589766979218 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75520570 chr10:75520579 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_17154 0 0 1 0 1 SEC24C chr10:75520607 5'GT 75520607 Upstream 29bp
chr1 231114988 231114988 1 + G A BLCA 231114974 + 231114954 231114994 41 ATCGAATGCAACCAGGAGGCCAAAGAGTTGTACCGAGACTA ATCGAATGCAACCAGGAGGCCAAAGAGTTGTACCAAGACTA < 41bp 1 0.614630365935926 1 0.301104247570038 experiment 0.770739268128148 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARV1 ENSG00000173409 CDS Human protein_coding chr1:231114974 chr1:231114988 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_17155 0 0 1 0 1 ARV1 chr1:231115025 5'GT 231115025 Upstream 38bp
chr5 54720564 54720564 1 + G C BLCA 54720581 + 54720561 54720601 41 CAAGAGAGATATTGTGTTTGCTGCCAGCCTCTACTTGTAGA CAACAGAGATATTGTGTTTGCTGCCAGCCTCTACTTGTAGA < 41bp 1 0.292646545023918 1 0.0951498448848724 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54720581 chr5:54720564 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_17156 0 0 1 0 1 SKIV2L2 chr5:54720548 3'AG 54720548 Downstream 17bp
chr7 129950684 129950684 1 + C T BLCA 129950671 + 129950651 129950691 41 GCTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTG GCTCCGAAGTGTACCATGGACCCCACGCCAATTTGGAAGTG < 41bp 1 0.576523245081972 1 0.0500959157943726 experiment 0.846953509836057 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950671 chr7:129950684 nonsynonymous SNV 0.957 4 34 hm5C_associated_SNPs_17157 0 0 0 0 1 CPA4 chr7:129950627 3'AG 129950627 Downstream 58bp
chr7 129950684 129950684 1 + C T BLCA 129950672 + 129950652 129950692 41 CTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTGG CTCCGAAGTGTACCATGGACCCCACGCCAATTTGGAAGTGG < 41bp 1 0.0980162719508187 1 0.038137823343277 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950672 chr7:129950684 nonsynonymous SNV 0.957 4 33 hm5C_associated_SNPs_17158 0 0 0 0 1 CPA4 chr7:129950627 3'AG 129950627 Downstream 58bp
chr19 56153912 56153912 1 + C T BLCA 56153916 + 56153896 56153936 41 CCACCCCACCCTCGGTCCTCCTCTCCGGAGGCCATGGACCC CCACCCCACCCTCGGTTCTCCTCTCCGGAGGCCATGGACCC < 41bp 1 0.141144600685596 1 0.221682697534561 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF580 ENSG00000213015 CDS Human protein_coding chr19:56153916 chr19:56153912 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_17159 0 0 1 0 1 ZNF580 chr19:56153863 3'AG 56153863 Downstream 50bp
chr1 164789372 164789372 1 + A G BLCA 164789352 + 164789332 164789372 41 TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAG < 41bp 1 0.607450585932579 1 0.130582302808762 experiment 0.785098828134843 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789352 chr1:164789372 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_17163 0 0 0 0 2 PBX1 chr1:164789309 3'AG 164789309 Downstream 64bp
chr1 164789372 164789372 1 + A G BLCA 164789352 + 164789332 164789372 41 TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAG < 41bp 1 0.607450585932579 1 0.130582302808762 experiment 0.785098828134843 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789352 chr1:164789372 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_17163 0 0 0 0 2 PBX1 chr1:164789421 5'GT 164789421 Upstream 50bp
chr9 140110130 140110130 1 + C T BLCA 140110114 + 140110094 140110134 41 CCTCCTTCCTGCAATAGGACCTGTCCGGGTGCCCCTCTGGG CCTCCTTCCTGCAATAGGACCTGTCCGGGTGCCCCTTTGGG < 41bp 1 0.0378160558632996 1 0.0841293036937714 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110114 chr9:140110130 synonymous SNV . 0 37 hm5C_associated_SNPs_17164 0 0 1 0 1 NDOR1 chr9:140110111 3'AG 140110111 Downstream 20bp
chr11 65829391 65829391 1 + G A BLCA 65829381 + 65829361 65829401 41 GAATGCCCACAAGGTCCCTCCCCCATGGCTGATTGCCATGC GAATGCCCACAAGGTCCCTCCCCCATGGCTAATTGCCATGC < 41bp 1 0.540649704002374 1 0.217325687408447 experiment 0.918700591995253 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65829381 chr11:65829391 synonymous SNV . 0 31 hm5C_associated_SNPs_17165 0 0 1 0 2 SF3B2 chr11:65829362 3'AG 65829362 Downstream 30bp
chr11 65829391 65829391 1 + G A BLCA 65829381 + 65829361 65829401 41 GAATGCCCACAAGGTCCCTCCCCCATGGCTGATTGCCATGC GAATGCCCACAAGGTCCCTCCCCCATGGCTAATTGCCATGC < 41bp 1 0.540649704002374 1 0.217325687408447 experiment 0.918700591995253 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65829381 chr11:65829391 synonymous SNV . 0 31 hm5C_associated_SNPs_17165 0 0 1 0 2 SF3B2 chr11:65829469 5'GT 65829469 Upstream 79bp
chr5 76355520 76355520 1 + G A BLCA 76355513 + 76355493 76355533 41 GAGCTGGAAAACGTAGGGAGCAGGTTGGAAGTGAAGGAACT GAGCTGGAAAACGTAGGGAGCAGGTTGAAAGTGAAGGAACT < 41bp 1 0.394628583818831 1 0.382625490427017 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76355513 chr5:76355520 nonsynonymous SNV 0.998 4 28 hm5C_associated_SNPs_17172 0 0 1 0 2 AGGF1 chr5:76355441 3'AG 76355441 Downstream 80bp
chr5 76355520 76355520 1 + G A BLCA 76355513 + 76355493 76355533 41 GAGCTGGAAAACGTAGGGAGCAGGTTGGAAGTGAAGGAACT GAGCTGGAAAACGTAGGGAGCAGGTTGAAAGTGAAGGAACT < 41bp 1 0.394628583818831 1 0.382625490427017 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76355513 chr5:76355520 nonsynonymous SNV 0.998 4 28 hm5C_associated_SNPs_17172 0 0 1 0 2 AGGF1 chr5:76355568 5'GT 76355568 Upstream 49bp
chr7 128119304 128119304 1 + G A BLCA 128119323 + 128119303 128119343 41 CGAATTCCCTGAGCTGGCACCTAGCCAAAATCAAAATCATT CAAATTCCCTGAGCTGGCACCTAGCCAAAATCAAAATCATT < 41bp 1 0.111074730678795 1 0.149672299623489 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control METTL2B ENSG00000165055 CDS Human protein_coding chr7:128119323 chr7:128119304 nonsynonymous SNV 0.984 4 2 hm5C_associated_SNPs_17173 0 0 1 0 1 METTL2B chr7:128119212 3'AG 128119212 Downstream 93bp
chr11 33078731 33078731 1 + G T BLCA 33078749 + 33078729 33078769 41 AAGATCCCCCAGCATATGACCATGCTATCAAACTTGTAGGA AATATCCCCCAGCATATGACCATGCTATCAAACTTGTAGGA < 41bp 1 0.341293190401418 1 0.250220715999603 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33078749 chr11:33078731 nonsynonymous SNV 0.981 2 3 hm5C_associated_SNPs_17174 0 0 1 0 2 TCP11L1 chr11:33078661 3'AG 33078661 Downstream 71bp
chr11 33078731 33078731 1 + G T BLCA 33078749 + 33078729 33078769 41 AAGATCCCCCAGCATATGACCATGCTATCAAACTTGTAGGA AATATCCCCCAGCATATGACCATGCTATCAAACTTGTAGGA < 41bp 1 0.341293190401418 1 0.250220715999603 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33078749 chr11:33078731 nonsynonymous SNV 0.981 2 3 hm5C_associated_SNPs_17174 0 0 1 0 2 TCP11L1 chr11:33078781 5'GT 33078781 Upstream 51bp
chr22 35726432 35726432 1 + C T BLCA 35726424 + 35726404 35726444 41 ATGAGCAGCTGACAGAGGAGCTGCTCATCGTCAATGACAAT ATGAGCAGCTGACAGAGGAGCTGCTCATTGTCAATGACAAT < 41bp 1 0.129953596844531 1 0.0741252303123474 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1 ENSG00000100284 CDS Human protein_coding chr22:35726424 chr22:35726432 synonymous SNV . 0 29 hm5C_associated_SNPs_17179 0 0 1 1 2 TOM1 chr22:35726340 3'AG 35726340 Downstream 93bp
chr22 35726432 35726432 1 + C T BLCA 35726424 + 35726404 35726444 41 ATGAGCAGCTGACAGAGGAGCTGCTCATCGTCAATGACAAT ATGAGCAGCTGACAGAGGAGCTGCTCATTGTCAATGACAAT < 41bp 1 0.129953596844531 1 0.0741252303123474 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1 ENSG00000100284 CDS Human protein_coding chr22:35726424 chr22:35726432 synonymous SNV . 0 29 hm5C_associated_SNPs_17179 0 0 1 1 2 TOM1 chr22:35726473 5'GT 35726473 Upstream 42bp
chr5 73045770 73045770 1 + G A BLCA 73045760 + 73045740 73045780 41 GGATCTCATCAGCGACATGTCATGATTGCAGAGCGCATCGA GGATCTCATCAGCGACATGTCATGATTGCAAAGCGCATCGA < 41bp 1 0.753233203484958 1 0.0647619962692261 experiment 0.493533593030084 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF28 ENSG00000214944 CDS Human protein_coding chr5:73045760 chr5:73045770 nonsynonymous SNV 0.073 0 31 hm5C_associated_SNPs_17182 0 0 1 0 1 ARHGEF28 chr5:73045809 5'GT 73045809 Upstream 40bp
chr5 73045779 73045779 1 + G A BLCA 73045760 + 73045740 73045780 41 GGATCTCATCAGCGACATGTCATGATTGCAGAGCGCATCGA GGATCTCATCAGCGACATGTCATGATTGCAGAGCGCATCAA < 41bp 1 0.738182050545708 1 0.0786057114601135 experiment 0.523635898908584 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF28 ENSG00000214944 CDS Human protein_coding chr5:73045760 chr5:73045779 nonsynonymous SNV 0.034 0 40 hm5C_associated_SNPs_17183 0 0 0 0 1 ARHGEF28 chr5:73045809 5'GT 73045809 Upstream 31bp
chr4 160264498 160264498 1 + C T BLCA 160264487 + 160264467 160264507 41 TGAGAAGCTAAGGATGATTGCAAAAGAAATTCGTCACGTTG TGAGAAGCTAAGGATGATTGCAAAAGAAATTTGTCACGTTG < 41bp 1 0.652867186054068 1 0.658014178276062 experiment 0.694265627891863 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160264487 chr4:160264498 nonsynonymous SNV 0.988 4 32 hm5C_associated_SNPs_17184 0 0 1 0 2 RAPGEF2 chr4:160264433 3'AG 160264433 Downstream 66bp
chr4 160264498 160264498 1 + C T BLCA 160264487 + 160264467 160264507 41 TGAGAAGCTAAGGATGATTGCAAAAGAAATTCGTCACGTTG TGAGAAGCTAAGGATGATTGCAAAAGAAATTTGTCACGTTG < 41bp 1 0.652867186054068 1 0.658014178276062 experiment 0.694265627891863 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160264487 chr4:160264498 nonsynonymous SNV 0.988 4 32 hm5C_associated_SNPs_17184 0 0 1 0 2 RAPGEF2 chr4:160264556 5'GT 160264556 Upstream 59bp
chr6 170866126 170866126 1 + G A BLCA 170866140 + 170866120 170866160 41 GGATCAGAACAACAGCCTGCCACCTTACGCTCAGGGCTTGG GGATCAAAACAACAGCCTGCCACCTTACGCTCAGGGCTTGG < 41bp 1 0.400301053105127 1 0.0565184056758881 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBP ENSG00000112592 CDS Human protein_coding chr6:170866140 chr6:170866126 synonymous SNV . 0 7 hm5C_associated_SNPs_17185 0 0 1 0 1 TBP chr6:170866171 5'GT 170866171 Upstream 46bp
chr15 52356167 52356167 1 + A T BLCA 52356166 + 52356146 52356186 41 ACTTTGATATTGATGAAGTTCAGCTTGATCCAAGAGCTCTG ACTTTGATATTGATGAAGTTCTGCTTGATCCAAGAGCTCTG < 41bp 1 0.635793579190057 1 0.264804422855377 experiment 0.728412841619886 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52356166 chr15:52356167 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_17186 0 0 1 0 1 MAPK6 chr15:52356099 3'AG 52356099 Downstream 69bp
chr7 114655788 114655788 1 + G A BLCA 114655776 + 114655756 114655796 41 TGTATCCTGGCTTGCTTGTTCTGCGAATTCCTGACCCTTTG TGTATCCTGGCTTGCTTGTTCTGCGAATTCCTAACCCTTTG < 41bp 1 0.775268461293433 1 0.312954843044281 experiment 0.449463077413134 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MDFIC ENSG00000135272 CDS Human protein_coding chr7:114655776 chr7:114655788 synonymous SNV . 0 33 hm5C_associated_SNPs_17187 0 0 1 0 1 MDFIC chr7:114655742 3'AG 114655742 Downstream 47bp
chr19 45975962 45975962 1 + G A BLCA 45975942 + 45975922 45975962 41 GATCCCCTACGAAGAGGGGCCCGGGCCGGGCCCGCTGGCGG GATCCCCTACGAAGAGGGGCCCGGGCCGGGCCCGCTGGCGA < 41bp 1 0.634068414444177 1 0.51979672908783 experiment 0.731863171111647 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975942 chr19:45975962 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_17190 0 0 0 0 1 FOSB chr19:45975964 5'GT 45975964 Upstream 3bp
chr19 45975962 45975962 1 + G A BLCA 45975943 + 45975923 45975963 41 ATCCCCTACGAAGAGGGGCCCGGGCCGGGCCCGCTGGCGGA ATCCCCTACGAAGAGGGGCCCGGGCCGGGCCCGCTGGCGAA < 41bp 1 0.722964690611617 1 0.780381798744202 experiment 0.554070618776767 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975943 chr19:45975962 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_17191 0 0 0 0 1 FOSB chr19:45975964 5'GT 45975964 Upstream 3bp
chr19 45975962 45975962 1 + G A BLCA 45975952 + 45975932 45975972 41 GAAGAGGGGCCCGGGCCGGGCCCGCTGGCGGAGGTGAGAGA GAAGAGGGGCCCGGGCCGGGCCCGCTGGCGAAGGTGAGAGA < 41bp 1 0.439053630974059 1 0.220198959112167 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975952 chr19:45975962 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_17192 0 0 0 0 1 FOSB chr19:45975964 5'GT 45975964 Upstream 3bp
chr19 45975962 45975962 1 + G A BLCA 45975953 + 45975933 45975973 41 AAGAGGGGCCCGGGCCGGGCCCGCTGGCGGAGGTGAGAGAT AAGAGGGGCCCGGGCCGGGCCCGCTGGCGAAGGTGAGAGAT < 41bp 1 0.442889209051723 1 0.486218899488449 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975953 chr19:45975962 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_17193 0 0 0 0 1 FOSB chr19:45975964 5'GT 45975964 Upstream 3bp
chr19 45975962 45975962 1 + G A BLCA 45975954 + 45975934 45975974 41 AGAGGGGCCCGGGCCGGGCCCGCTGGCGGAGGTGAGAGATT AGAGGGGCCCGGGCCGGGCCCGCTGGCGAAGGTGAGAGATT < 41bp 1 0.562996902130535 1 0.403030574321747 experiment 0.87400619573893 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975954 chr19:45975962 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_17194 0 0 0 0 1 FOSB chr19:45975964 5'GT 45975964 Upstream 3bp
chr8 95885644 95885644 1 + C T BLCA 95885659 + 95885639 95885679 41 CCAGGCAGGAGCTGTGTGTTCTGACTTCTTTAACAAGGCTG CCAGGTAGGAGCTGTGTGTTCTGACTTCTTTAACAAGGCTG < 41bp 1 0.629179219397612 1 0.203479409217834 experiment 0.741641561204775 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INTS8 ENSG00000164941 CDS Human protein_coding chr8:95885659 chr8:95885644 nonsynonymous SNV 0.999 4 6 hm5C_associated_SNPs_17195 0 0 1 0 2 INTS8 chr8:95885602 3'AG 95885602 Downstream 43bp
chr8 95885644 95885644 1 + C T BLCA 95885659 + 95885639 95885679 41 CCAGGCAGGAGCTGTGTGTTCTGACTTCTTTAACAAGGCTG CCAGGTAGGAGCTGTGTGTTCTGACTTCTTTAACAAGGCTG < 41bp 1 0.629179219397612 1 0.203479409217834 experiment 0.741641561204775 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INTS8 ENSG00000164941 CDS Human protein_coding chr8:95885659 chr8:95885644 nonsynonymous SNV 0.999 4 6 hm5C_associated_SNPs_17195 0 0 1 0 2 INTS8 chr8:95885705 5'GT 95885705 Upstream 62bp
chr7 94057029 94057029 1 + G C BLCA 94057027 + 94057007 94057047 41 CGATGGAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCAC CGATGGAGACTTCTACAGGGCTCACCAGCCTCGCTCAGCAC < 41bp 1 0.102055235770642 1 0.0219503045082092 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057027 chr7:94057029 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_17196 0 0 0 0 1 COL1A2 chr7:94056939 3'AG 94056939 Downstream 91bp
chr7 94057029 94057029 1 + G C BLCA 94057032 + 94057012 94057052 41 GAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCACCTTCT GAGACTTCTACAGGGCTCACCAGCCTCGCTCAGCACCTTCT < 41bp 1 0.120190115734067 1 0.268230378627777 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057032 chr7:94057029 nonsynonymous SNV 1.000 5 18 hm5C_associated_SNPs_17197 0 0 0 0 1 COL1A2 chr7:94056939 3'AG 94056939 Downstream 91bp
chr17 49239126 49239126 1 + G C BLCA 49239112 + 49239092 49239132 41 CATTATACATGGCAGTGATTCTGTGGAGAGTGCAGAGAAGG CATTATACATGGCAGTGATTCTGTGGAGAGTGCACAGAAGG < 41bp 1 0.459416048162985 1 0.72057843208313 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NME1 ENSG00000239672 CDS Human protein_coding chr17:49239112 chr17:49239126 nonsynonymous SNV 0.996 0 35 hm5C_associated_SNPs_17198 0 0 1 0 1 NME1 chr17:49239089 3'AG 49239089 Downstream 38bp
chr17 49239126 49239126 1 + G C BLCA 49239124 + 49239104 49239144 41 CAGTGATTCTGTGGAGAGTGCAGAGAAGGAGATCGGCTTGT CAGTGATTCTGTGGAGAGTGCACAGAAGGAGATCGGCTTGT < 41bp 1 0.392854879053242 1 0.104297041893005 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NME1 ENSG00000239672 CDS Human protein_coding chr17:49239124 chr17:49239126 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_17199 0 0 1 0 1 NME1 chr17:49239089 3'AG 49239089 Downstream 38bp
chr3 188242483 188242483 1 + A G BLCA 188242472 + 188242452 188242492 41 GGGGAATCCCGGAGGCAAGACACTTGAGGAGAGGCGCTCCA GGGGAATCCCGGAGGCAAGACACTTGAGGAGGGGCGCTCCA < 41bp 1 0.187611857974937 1 0.0565183460712433 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LPP ENSG00000145012 CDS Human protein_coding chr3:188242472 chr3:188242483 nonsynonymous SNV 0.861 4 32 hm5C_associated_SNPs_17200 0 0 1 0 2 LPP chr3:188242453 3'AG 188242453 Downstream 31bp
chr3 188242483 188242483 1 + A G BLCA 188242472 + 188242452 188242492 41 GGGGAATCCCGGAGGCAAGACACTTGAGGAGAGGCGCTCCA GGGGAATCCCGGAGGCAAGACACTTGAGGAGGGGCGCTCCA < 41bp 1 0.187611857974937 1 0.0565183460712433 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LPP ENSG00000145012 CDS Human protein_coding chr3:188242472 chr3:188242483 nonsynonymous SNV 0.861 4 32 hm5C_associated_SNPs_17200 0 0 1 0 2 LPP chr3:188242575 5'GT 188242575 Upstream 93bp
chr14 77706871 77706871 1 + C T BLCA 77706886 + 77706866 77706906 41 GAGTTCAACGCCGAGCTCAACCGCGTGCCGCTCAAGCGGCT GAGTTTAACGCCGAGCTCAACCGCGTGCCGCTCAAGCGGCT < 41bp 1 0.265162641162924 1 0.223473697900772 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77706886 chr14:77706871 synonymous SNV . 0 6 hm5C_associated_SNPs_17202 0 0 0 0 2 TMEM63C chr14:77706818 3'AG 77706818 Downstream 54bp
chr14 77706871 77706871 1 + C T BLCA 77706886 + 77706866 77706906 41 GAGTTCAACGCCGAGCTCAACCGCGTGCCGCTCAAGCGGCT GAGTTTAACGCCGAGCTCAACCGCGTGCCGCTCAAGCGGCT < 41bp 1 0.265162641162924 1 0.223473697900772 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77706886 chr14:77706871 synonymous SNV . 0 6 hm5C_associated_SNPs_17202 0 0 0 0 2 TMEM63C chr14:77706951 5'GT 77706951 Upstream 81bp
chr2 32828145 32828145 1 + T A BLCA 32828127 + 32828107 32828147 41 GACCAGAAGAGAAGTGGAATCCTCAGACCTCAAGCTTTTTG GACCAGAAGAGAAGTGGAATCCTCAGACCTCAAGCTTTATG < 41bp 1 0.0971866773275454 1 0.0665454864501953 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32828127 chr2:32828145 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_17206 0 0 1 0 2 BIRC6 chr2:32828073 3'AG 32828073 Downstream 73bp
chr2 32828145 32828145 1 + T A BLCA 32828127 + 32828107 32828147 41 GACCAGAAGAGAAGTGGAATCCTCAGACCTCAAGCTTTTTG GACCAGAAGAGAAGTGGAATCCTCAGACCTCAAGCTTTATG < 41bp 1 0.0971866773275454 1 0.0665454864501953 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32828127 chr2:32828145 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_17206 0 0 1 0 2 BIRC6 chr2:32828150 5'GT 32828150 Upstream 6bp
chr20 35866820 35866820 1 + G A BLCA 35866808 + 35866788 35866828 41 CCTCTTTCCTTTGGCAGGATCGCTGCAGAGCAGAGCAGTAG CCTCTTTCCTTTGGCAGGATCGCTGCAGAGCAAAGCAGTAG < 41bp 1 0.300886852854368 1 0.251753449440002 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35866808 chr20:35866820 synonymous SNV . 0 33 hm5C_associated_SNPs_17207 0 0 1 0 2 RPN2 chr20:35866805 3'AG 35866805 Downstream 16bp
chr20 35866820 35866820 1 + G A BLCA 35866808 + 35866788 35866828 41 CCTCTTTCCTTTGGCAGGATCGCTGCAGAGCAGAGCAGTAG CCTCTTTCCTTTGGCAGGATCGCTGCAGAGCAAAGCAGTAG < 41bp 1 0.300886852854368 1 0.251753449440002 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35866808 chr20:35866820 synonymous SNV . 0 33 hm5C_associated_SNPs_17207 0 0 1 0 2 RPN2 chr20:35866852 5'GT 35866852 Upstream 33bp
chr19 4954700 4954700 1 + C T BLCA 4954693 + 4954673 4954713 41 AGCAGGGCGGGTCCCCGCGCCGGACATCCAAGAAAACCAAG AGCAGGGCGGGTCCCCGCGCCGGACATTCAAGAAAACCAAG < 41bp 1 0.26413727672622 1 0.482388198375702 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954693 chr19:4954700 . 0.051 0 28 hm5C_associated_SNPs_17208 0 0 0 0 2 UHRF1 chr19:4954662 3'AG 4954662 Downstream 39bp
chr19 4954700 4954700 1 + C T BLCA 4954693 + 4954673 4954713 41 AGCAGGGCGGGTCCCCGCGCCGGACATCCAAGAAAACCAAG AGCAGGGCGGGTCCCCGCGCCGGACATTCAAGAAAACCAAG < 41bp 1 0.26413727672622 1 0.482388198375702 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954693 chr19:4954700 . 0.051 0 28 hm5C_associated_SNPs_17208 0 0 0 0 2 UHRF1 chr19:4954678 3'AG 4954678 Downstream 23bp
chr19 48179158 48179158 1 + C G BLCA 48179146 + 48179126 48179166 41 CTGGATAATCCCGGGGAGGCCCAAAGTGCCTTCTATGAAGG CTGGATAATCCCGGGGAGGCCCAAAGTGCCTTGTATGAAGG < 41bp 1 0.145958826462974 1 0.701330006122589 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BICRA ENSG00000063169 CDS Human protein_coding chr19:48179146 chr19:48179158 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_17209 0 0 1 0 2 BICRA chr19:48179108 3'AG 48179108 Downstream 51bp
chr19 48179158 48179158 1 + C G BLCA 48179146 + 48179126 48179166 41 CTGGATAATCCCGGGGAGGCCCAAAGTGCCTTCTATGAAGG CTGGATAATCCCGGGGAGGCCCAAAGTGCCTTGTATGAAGG < 41bp 1 0.145958826462974 1 0.701330006122589 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BICRA ENSG00000063169 CDS Human protein_coding chr19:48179146 chr19:48179158 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_17209 0 0 1 0 2 BICRA chr19:48179173 5'GT 48179173 Upstream 16bp
chr2 37475346 37475346 1 + G A BLCA 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATATGTTAATAAATCCAAAGAAGATGGGAGAGAGA < 41bp 1 0.430713116369607 1 0.490877419710159 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475346 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_17210 0 0 1 2 1 NDUFAF7 chr2:37475278 3'AG 37475278 Downstream 69bp
chr2 37475346 37475346 1 + G A BLCA 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATATGTTAATAAATCCAAAGAAGATGGGAGAGAGAT < 41bp 1 0.407134950951458 1 0.322917401790619 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475346 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_17211 0 0 1 2 1 NDUFAF7 chr2:37475278 3'AG 37475278 Downstream 69bp
chr2 37475355 37475355 1 + G T BLCA 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATATGTTAATGAATCCAAATAAGATGGGAGAGAGA < 41bp 1 0.359299314634437 1 0.498546242713928 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475355 nonsynonymous SNV 0.999 0 26 hm5C_associated_SNPs_17212 0 0 1 3 1 NDUFAF7 chr2:37475278 3'AG 37475278 Downstream 78bp
chr2 37475355 37475355 1 + G T BLCA 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATATGTTAATGAATCCAAATAAGATGGGAGAGAGAT < 41bp 1 0.249097379857346 1 0.228430807590485 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475355 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_17213 0 0 1 3 1 NDUFAF7 chr2:37475278 3'AG 37475278 Downstream 78bp
chr6 44274746 44274746 1 - G A BRCA 44274726 - 44274706 44274746 41 CGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC TGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC < 41bp 1 0.514239745845444 1 0.859180927276611 experiment 0.971520508309112 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human protein_coding chr6:44274726 chr6:44274746 nonsynonymous SNV 0.995 5 1 hm5C_associated_SNPs_17214 0 0 1 0 2 AARS2 chr6:44274660 5'GT 44274660 Upstream 87bp
chr6 44274746 44274746 1 - G A BRCA 44274726 - 44274706 44274746 41 CGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC TGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC < 41bp 1 0.514239745845444 1 0.859180927276611 experiment 0.971520508309112 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human other chr6:44274726 chr6:44274746 nonsynonymous SNV 0.995 5 1 hm5C_associated_SNPs_17214 0 0 1 0 2 AARS2 chr6:44274768 3'AG 44274768 Downstream 23bp
chr6 43417235 43417235 1 + C T BRCA 43417228 + 43417208 43417248 41 CAGCTGCTCCAGCAGACCATCTGCAAACGCTTTGCCAACAA CAGCTGCTCCAGCAGACCATCTGCAAATGCTTTGCCAACAA < 41bp 1 0.772163415744303 1 0.779264450073242 experiment 0.455673168511395 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43417228 chr6:43417235 nonsynonymous SNV 0.994 2 28 hm5C_associated_SNPs_17215 0 0 1 0 2 ABCC10 chr6:43417160 3'AG 43417160 Downstream 76bp
chr6 43417235 43417235 1 + C T BRCA 43417228 + 43417208 43417248 41 CAGCTGCTCCAGCAGACCATCTGCAAACGCTTTGCCAACAA CAGCTGCTCCAGCAGACCATCTGCAAATGCTTTGCCAACAA < 41bp 1 0.772163415744303 1 0.779264450073242 experiment 0.455673168511395 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43417228 chr6:43417235 nonsynonymous SNV 0.994 2 28 hm5C_associated_SNPs_17215 0 0 1 0 2 ABCC10 chr6:43417272 5'GT 43417272 Upstream 38bp
chr1 94953135 94953135 1 + C T BRCA 94953142 + 94953122 94953162 41 TTGTTTCGGTTTTCAATGGGCTTCATTGATAGTATTATTGC TTGTTTCGGTTTTTAATGGGCTTCATTGATAGTATTATTGC < 41bp 1 0.350772386765224 1 0.103641092777252 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94953142 chr1:94953135 nonsynonymous SNV 0.996 2 14 hm5C_associated_SNPs_17216 0 0 1 0 2 ABCD3 chr1:94953098 3'AG 94953098 Downstream 38bp
chr1 94953135 94953135 1 + C T BRCA 94953142 + 94953122 94953162 41 TTGTTTCGGTTTTCAATGGGCTTCATTGATAGTATTATTGC TTGTTTCGGTTTTTAATGGGCTTCATTGATAGTATTATTGC < 41bp 1 0.350772386765224 1 0.103641092777252 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94953142 chr1:94953135 nonsynonymous SNV 0.996 2 14 hm5C_associated_SNPs_17216 0 0 1 0 2 ABCD3 chr1:94953167 5'GT 94953167 Upstream 33bp
chr3 128631355 128631355 1 + C G BRCA 128631356 + 128631336 128631376 41 CTTTTCCTTCCCAGATGCTCCAGAAAACCTAGATGAGCAGA CTTTTCCTTCCCAGATGCTGCAGAAAACCTAGATGAGCAGA < 41bp 1 0.521262853169532 1 0.642116248607635 experiment 0.957474293660937 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128631356 chr3:128631355 nonsynonymous SNV 0.995 1 20 hm5C_associated_SNPs_17218 0 0 1 0 1 ACAD9 chr3:128631350 3'AG 128631350 Downstream 6bp
chr11 76572075 76572075 1 + G T BRCA 76572057 + 76572037 76572077 41 ACCGAGAGGGCTACTGGGGCCCCACGACCTCCACGCTGGAC ACCGAGAGGGCTACTGGGGCCCCACGACCTCCACGCTGTAC < 41bp 1 0.286293829251539 1 0.112675964832306 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ACER3 ENSG00000078124 CDS Human protein_coding chr11:76572057 chr11:76572075 nonsynonymous SNV 0.994 3 39 hm5C_associated_SNPs_17219 0 0 1 0 2 ACER3 chr11:76572106 5'GT 76572106 Upstream 32bp
chr11 76572075 76572075 1 + G T BRCA 76572057 + 76572037 76572077 41 ACCGAGAGGGCTACTGGGGCCCCACGACCTCCACGCTGGAC ACCGAGAGGGCTACTGGGGCCCCACGACCTCCACGCTGTAC < 41bp 1 0.286293829251539 1 0.112675964832306 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ACER3 ENSG00000078124 CDS Human protein_coding chr11:76572057 chr11:76572075 nonsynonymous SNV 0.994 3 39 hm5C_associated_SNPs_17219 0 0 1 0 2 ACER3 chr11:76572123 5'GT 76572123 Upstream 49bp
chr11 76572075 76572075 1 + G T BRCA 76572058 + 76572038 76572078 41 CCGAGAGGGCTACTGGGGCCCCACGACCTCCACGCTGGACT CCGAGAGGGCTACTGGGGCCCCACGACCTCCACGCTGTACT < 41bp 1 0.362741794122704 1 0.101051956415176 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ACER3 ENSG00000078124 CDS Human protein_coding chr11:76572058 chr11:76572075 nonsynonymous SNV 0.994 3 38 hm5C_associated_SNPs_17220 0 0 1 0 2 ACER3 chr11:76572106 5'GT 76572106 Upstream 32bp
chr11 76572075 76572075 1 + G T BRCA 76572058 + 76572038 76572078 41 CCGAGAGGGCTACTGGGGCCCCACGACCTCCACGCTGGACT CCGAGAGGGCTACTGGGGCCCCACGACCTCCACGCTGTACT < 41bp 1 0.362741794122704 1 0.101051956415176 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ACER3 ENSG00000078124 CDS Human protein_coding chr11:76572058 chr11:76572075 nonsynonymous SNV 0.994 3 38 hm5C_associated_SNPs_17220 0 0 1 0 2 ACER3 chr11:76572123 5'GT 76572123 Upstream 49bp
chr22 41923399 41923399 1 + C T BRCA 41923388 + 41923368 41923408 41 AGCCTCGCCACCTTGGGGGCCGGGCCATCATCACCAAGAGC AGCCTCGCCACCTTGGGGGCCGGGCCATCATTACCAAGAGC < 41bp 1 0.284729336832137 1 0.64673638343811 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41923388 chr22:41923399 synonymous SNV . 0 32 hm5C_associated_SNPs_17221 0 0 1 0 1 ACO2 chr22:41923424 5'GT 41923424 Upstream 26bp
chr22 41865164 41865164 1 + G T BRCA 41865147 + 41865127 41865167 41 ACCTCATCTTTGTCAGTGCACAAAATGGCGCCCTACAGCCT ACCTCATCTTTGTCAGTGCACAAAATGGCGCCCTACATCCT < 41bp 1 0.603207568369081 1 0.495965510606766 experiment 0.793584863261838 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41865147 chr22:41865164 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_17222 0 0 1 0 1 ACO2 chr22:41865186 5'GT 41865186 Upstream 23bp
chr17 48541257 48541257 1 + G A BRCA 48541260 + 48541240 48541280 41 TCCAGTTATGACATCTCGACCATGTGTGGAGGTGGGGTGGG TCCAGTTATGACATCTCAACCATGTGTGGAGGTGGGGTGGG < 41bp 1 0.5483968128783 1 0.419202566146851 experiment 0.9032063742434 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48541260 chr17:48541257 synonymous SNV . 0 18 hm5C_associated_SNPs_17223 0 0 0 0 2 ACSF2 chr17:48541179 3'AG 48541179 Downstream 79bp
chr17 48541257 48541257 1 + G A BRCA 48541260 + 48541240 48541280 41 TCCAGTTATGACATCTCGACCATGTGTGGAGGTGGGGTGGG TCCAGTTATGACATCTCAACCATGTGTGGAGGTGGGGTGGG < 41bp 1 0.5483968128783 1 0.419202566146851 experiment 0.9032063742434 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48541260 chr17:48541257 synonymous SNV . 0 18 hm5C_associated_SNPs_17223 0 0 0 0 2 ACSF2 chr17:48541270 5'GT 48541270 Upstream 14bp
chr12 52379131 52379131 1 + C T BRCA 52379127 + 52379107 52379147 41 CCGAATCAGAGGGTGGGGACCAAACGGTAGGAGGGCCTGGG CCGAATCAGAGGGTGGGGACCAAATGGTAGGAGGGCCTGGG < 41bp 1 0.363200378339557 1 0.735336661338806 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52379127 chr12:52379131 stopgain 0.999 1 25 hm5C_associated_SNPs_17224 0 0 1 0 1 ACVR1B chr12:52379132 5'GT 52379132 Upstream 2bp
chr9 18887969 18887969 1 + C G BRCA 18887949 + 18887929 18887969 41 TGGACAGATCCTTCAAGTTGCAAACCTTAGCGGTGGGTCTC TGGACAGATCCTTCAAGTTGCAAACCTTAGCGGTGGGTCTG < 41bp 1 0.0704800656613596 1 0.0866265892982483 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18887949 chr9:18887969 nonsynonymous SNV 0.998 0 41 hm5C_associated_SNPs_17225 0 0 0 0 1 ADAMTSL1 chr9:18888041 5'GT 18888041 Upstream 73bp
chr15 101447414 101447414 1 + C T BRCA 101447426 + 101447406 101447446 41 ACTCACAGCAGCCGTGTTCACAAAAAATCTCGACAAAGCCC ACTCACAGTAGCCGTGTTCACAAAAAATCTCGACAAAGCCC < 41bp 1 0.769176926013808 1 0.410659909248352 experiment 0.461646147972383 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101447426 chr15:101447414 nonsynonymous SNV 0.995 2 9 hm5C_associated_SNPs_17226 0 0 0 0 2 ALDH1A3 chr15:101447326 3'AG 101447326 Downstream 89bp
chr15 101447414 101447414 1 + C T BRCA 101447426 + 101447406 101447446 41 ACTCACAGCAGCCGTGTTCACAAAAAATCTCGACAAAGCCC ACTCACAGTAGCCGTGTTCACAAAAAATCTCGACAAAGCCC < 41bp 1 0.769176926013808 1 0.410659909248352 experiment 0.461646147972383 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101447426 chr15:101447414 nonsynonymous SNV 0.995 2 9 hm5C_associated_SNPs_17226 0 0 0 0 2 ALDH1A3 chr15:101447483 5'GT 101447483 Upstream 70bp
chr19 36370329 36370329 1 + G C BRCA 36370340 + 36370320 36370360 41 CGCTTCCTGGAGGAACGACCCTGACCCGGCCCCCTTCACCC CGCTTCCTGCAGGAACGACCCTGACCCGGCCCCCTTCACCC < 41bp 1 0.418072880295048 1 0.113428562879562 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APLP1 ENSG00000105290 CDS Human protein_coding chr19:36370340 chr19:36370329 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_17230 0 0 1 0 1 APLP1 chr19:36370245 3'AG 36370245 Downstream 85bp
chr15 72855839 72855839 1 + T C BRCA 72855834 + 72855814 72855854 41 TTCGCTGCAAATGTGGGCGCCAATTTTGGTAAGCAAGTGAT TTCGCTGCAAATGTGGGCGCCAATTCTGGTAAGCAAGTGAT < 41bp 1 0.0484142437328649 1 0.191669940948486 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARIH1 ENSG00000166233 CDS Human protein_coding chr15:72855834 chr15:72855839 synonymous SNV . 0 26 hm5C_associated_SNPs_17237 0 0 1 0 1 ARIH1 chr15:72855841 5'GT 72855841 Upstream 3bp
chr17 4621248 4621248 1 + C T BRCA 4621233 + 4621213 4621253 41 GCAGTTCGCCCCGGAGAAACCCGGCCCCCAGCCTTCAGCCG GCAGTTCGCCCCGGAGAAACCCGGCCCCCAGCCTTTAGCCG < 41bp 1 0.513363840714458 1 0.483279198408127 experiment 0.973272318571084 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4621233 chr17:4621248 nonsynonymous SNV 0.997 0 36 hm5C_associated_SNPs_17238 0 0 0 0 2 ARRB2 chr17:4621183 3'AG 4621183 Downstream 66bp
chr17 4621248 4621248 1 + C T BRCA 4621233 + 4621213 4621253 41 GCAGTTCGCCCCGGAGAAACCCGGCCCCCAGCCTTCAGCCG GCAGTTCGCCCCGGAGAAACCCGGCCCCCAGCCTTTAGCCG < 41bp 1 0.513363840714458 1 0.483279198408127 experiment 0.973272318571084 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4621233 chr17:4621248 nonsynonymous SNV 0.997 0 36 hm5C_associated_SNPs_17238 0 0 0 0 2 ARRB2 chr17:4621318 5'GT 4621318 Upstream 71bp
chr1 1460657 1460657 1 + C T BRCA 1460670 + 1460650 1460690 41 CTTCCTTCGGAAGCGAGCCACCGTGAGTGTCACTAAGCCTC CTTCCTTTGGAAGCGAGCCACCGTGAGTGTCACTAAGCCTC < 41bp 1 0.181809620126792 1 0.163429528474808 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1460670 chr1:1460657 nonsynonymous SNV 0.014 4 8 hm5C_associated_SNPs_17239 0 0 1 0 2 ATAD3A chr1:1460620 3'AG 1460620 Downstream 38bp
chr1 1460657 1460657 1 + C T BRCA 1460670 + 1460650 1460690 41 CTTCCTTCGGAAGCGAGCCACCGTGAGTGTCACTAAGCCTC CTTCCTTTGGAAGCGAGCCACCGTGAGTGTCACTAAGCCTC < 41bp 1 0.181809620126792 1 0.163429528474808 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1460670 chr1:1460657 nonsynonymous SNV 0.014 4 8 hm5C_associated_SNPs_17239 0 0 1 0 2 ATAD3A chr1:1460671 5'GT 1460671 Upstream 15bp
chr3 11596291 11596291 1 + G A BRCA 11596287 + 11596267 11596307 41 CTCCCCTTCTCCATGCAGATCTGGGACATGAGCGATGATGA CTCCCCTTCTCCATGCAGATCTGGAACATGAGCGATGATGA < 41bp 1 0.70846181300705 1 0.586489200592041 experiment 0.583076373985899 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATG7 ENSG00000197548 CDS Human protein_coding chr3:11596287 chr3:11596291 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_17240 0 0 0 0 1 ATG7 chr3:11596285 3'AG 11596285 Downstream 7bp
chr1 154303935 154303935 1 + G A BRCA 154303952 + 154303932 154303972 41 AGCGATAACCAGGTGAATAACCGCCAGTCTCAGGTGCTGAT AGCAATAACCAGGTGAATAACCGCCAGTCTCAGGTGCTGAT < 41bp 1 0.157618685464493 1 0.072866827249527 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154303952 chr1:154303935 nonsynonymous SNV 0.999 5 4 hm5C_associated_SNPs_17241 0 0 1 0 2 ATP8B2 chr1:154303920 3'AG 154303920 Downstream 16bp
chr1 154303935 154303935 1 + G A BRCA 154303952 + 154303932 154303972 41 AGCGATAACCAGGTGAATAACCGCCAGTCTCAGGTGCTGAT AGCAATAACCAGGTGAATAACCGCCAGTCTCAGGTGCTGAT < 41bp 1 0.157618685464493 1 0.072866827249527 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154303952 chr1:154303935 nonsynonymous SNV 0.999 5 4 hm5C_associated_SNPs_17241 0 0 1 0 2 ATP8B2 chr1:154303981 5'GT 154303981 Upstream 47bp
chr16 28845927 28845927 1 + G C BRCA 28845926 + 28845906 28845946 41 CCCGCCTCTGGTGGCTGCCACGCCCTATTCTTCCTACATCC CCCGCCTCTGGTGGCTGCCACCCCCTATTCTTCCTACATCC < 41bp 1 0.185685226029919 1 0.643854737281799 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28845926 chr16:28845927 synonymous SNV . 0 22 hm5C_associated_SNPs_17242 0 0 1 0 1 ATXN2L chr16:28846014 5'GT 28846014 Upstream 88bp
chr7 70252221 70252221 1 + G T BRCA 70252228 + 70252208 70252248 41 GTTCGGCCACAAGGATGGCCCCAGTGTGCAGAACTTTAGCA GTTCGGCCACAAGTATGGCCCCAGTGTGCAGAACTTTAGCA < 41bp 1 0.131408833168508 1 0.067649632692337 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:70252228 chr7:70252221 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_17243 0 0 1 0 1 AUTS2 chr7:70252195 3'AG 70252195 Downstream 27bp
chrX 152770766 152770766 1 + C T BRCA 152770746 + 152770726 152770766 41 CTGACACCACGCTGCTGGACCTGCAGAACAACGACATCTCC CTGACACCACGCTGCTGGACCTGCAGAACAACGACATCTCT < 41bp 1 0.618475576145356 1 0.305181384086609 experiment 0.763048847709288 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BGN ENSG00000182492 CDS Human protein_coding chrX:152770746 chrX:152770766 synonymous SNV . 0 41 hm5C_associated_SNPs_17246 0 0 0 0 2 BGN chrX:152770696 3'AG 152770696 Downstream 71bp
chrX 152770766 152770766 1 + C T BRCA 152770746 + 152770726 152770766 41 CTGACACCACGCTGCTGGACCTGCAGAACAACGACATCTCC CTGACACCACGCTGCTGGACCTGCAGAACAACGACATCTCT < 41bp 1 0.618475576145356 1 0.305181384086609 experiment 0.763048847709288 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BGN ENSG00000182492 CDS Human protein_coding chrX:152770746 chrX:152770766 synonymous SNV . 0 41 hm5C_associated_SNPs_17246 0 0 0 0 2 BGN chrX:152770808 5'GT 152770808 Upstream 43bp
chr2 32824940 32824940 1 + C T BRCA 32824931 + 32824911 32824951 41 GAGACAACTGGTGGTCATAGCGTGCGATTCAATCCAAACCT GAGACAACTGGTGGTCATAGCGTGCGATTTAATCCAAACCT < 41bp 1 0.0965295129498336 1 0.524673283100128 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32824931 chr2:32824940 synonymous SNV . 0 30 hm5C_associated_SNPs_17247 0 0 1 0 1 BIRC6 chr2:32824967 5'GT 32824967 Upstream 28bp
chr8 22037949 22037949 1 + G A BRCA 22037952 + 22037932 22037972 41 ACCCCAATGGCTACTCTGCTCACATGCACTGCGTGTGGCGC ACCCCAATGGCTACTCTACTCACATGCACTGCGTGTGGCGC < 41bp 1 0.489673971783049 1 0.229418903589249 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037952 chr8:22037949 nonsynonymous SNV 0.994 2 18 hm5C_associated_SNPs_17248 0 0 0 0 2 BMP1 chr8:22037881 3'AG 22037881 Downstream 69bp
chr8 22037949 22037949 1 + G A BRCA 22037952 + 22037932 22037972 41 ACCCCAATGGCTACTCTGCTCACATGCACTGCGTGTGGCGC ACCCCAATGGCTACTCTACTCACATGCACTGCGTGTGGCGC < 41bp 1 0.489673971783049 1 0.229418903589249 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037952 chr8:22037949 nonsynonymous SNV 0.994 2 18 hm5C_associated_SNPs_17248 0 0 0 0 2 BMP1 chr8:22037996 5'GT 22037996 Upstream 48bp
chr2 28521317 28521317 1 + C G BRCA 28521298 + 28521278 28521318 41 TGGACAGCTTTACTCCCAGGCCCAAAAAAATTATCCGTACA TGGACAGCTTTACTCCCAGGCCCAAAAAAATTATCCGTAGA < 41bp 1 0.214987816338656 1 0.193666994571686 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BABAM2 ENSG00000158019 CDS Human protein_coding chr2:28521298 chr2:28521317 stopgain 0.994 1 40 hm5C_associated_SNPs_17249 0 0 1 1 1 BABAM2 chr2:28521358 5'GT 28521358 Upstream 42bp
chr20 11900400 11900400 1 + C T BRCA 11900386 + 11900366 11900406 41 TATGTTTTAGCTGTTGGGAGCTCTGTGTTCCATGCGATGTT TATGTTTTAGCTGTTGGGAGCTCTGTGTTCCATGTGATGTT < 41bp 1 0.194631353416733 1 0.128027737140656 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BTBD3 ENSG00000132640 CDS Human protein_coding chr20:11900386 chr20:11900400 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_17250 0 0 1 0 2 BTBD3 chr20:11900366 3'AG 11900366 Downstream 35bp
chr20 11900400 11900400 1 + C T BRCA 11900386 + 11900366 11900406 41 TATGTTTTAGCTGTTGGGAGCTCTGTGTTCCATGCGATGTT TATGTTTTAGCTGTTGGGAGCTCTGTGTTCCATGTGATGTT < 41bp 1 0.194631353416733 1 0.128027737140656 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BTBD3 ENSG00000132640 CDS Human protein_coding chr20:11900386 chr20:11900400 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_17250 0 0 1 0 2 BTBD3 chr20:11900484 5'GT 11900484 Upstream 85bp
chr14 60591901 60591901 1 + T G BRCA 60591886 + 60591866 60591906 41 GGTCATATATTGAGAGTTTACGGTGGTGTTTTGCCTTGGTC GGTCATATATTGAGAGTTTACGGTGGTGTTTTGCCGTGGTC < 41bp 1 0.785407749008349 1 0.568998694419861 experiment 0.429184501983302 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60591886 chr14:60591901 synonymous SNV . 0 36 hm5C_associated_SNPs_17251 0 0 1 0 1 PCNX4 chr14:60591969 5'GT 60591969 Upstream 69bp
chr19 10200684 10200684 1 + C T BRCA 10200688 + 10200668 10200708 41 TTGCCTGCTCCTCCTGCGACCACGTCTGGTGGCGCCGCGTG TTGCCTGCTCCTCCTGTGACCACGTCTGGTGGCGCCGCGTG < 41bp 1 0.666545934525135 1 0.655128657817841 experiment 0.666908130949731 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10200688 chr19:10200684 nonsynonymous SNV 0.995 0 17 hm5C_associated_SNPs_17254 0 0 1 0 1 C19orf66 chr19:10200723 5'GT 10200723 Upstream 40bp
chr12 7177194 7177194 1 + C T BRCA 7177213 + 7177193 7177233 41 ACAGAGGATAATTGGAGGATCCGATGCAGATATTAAAAACT ATAGAGGATAATTGGAGGATCCGATGCAGATATTAAAAACT < 41bp 1 0.097711385100086 1 0.19489648938179 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C1S ENSG00000182326 CDS Human protein_coding chr12:7177213 chr12:7177194 stopgain 0.295 0 2 hm5C_associated_SNPs_17255 0 0 0 0 1 C1S chr12:7177159 3'AG 7177159 Downstream 36bp
chr20 17956500 17956500 1 + G A BRCA 17956504 + 17956484 17956524 41 AAGTGCTGTTCAACATGAAACCTTAAACTATATAGGTCTGC AAGTGCTGTTCAACATAAAACCTTAAACTATATAGGTCTGC < 41bp 1 0.120172342757657 1 0.0861762464046478 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MGME1 ENSG00000125871 CDS Human protein_coding chr20:17956504 chr20:17956500 nonsynonymous SNV 0.944 0 17 hm5C_associated_SNPs_17256 0 0 1 0 1 MGME1 chr20:17956546 5'GT 17956546 Upstream 47bp
chr2 74643227 74643227 1 - C A BRCA 74643210 - 74643190 74643230 41 CTCGAGGAGGGCGAGGACGTCGTAGGGGACATCTTGGCCGA CTCTAGGAGGGCGAGGACGTCGTAGGGGACATCTTGGCCGA < 41bp 1 0.678906474565905 1 0.75799685716629 experiment 0.642187050868191 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C2orf81 ENSG00000159239 CDS Human protein_coding chr2:74643210 chr2:74643227 stopgain 0.337 0 4 hm5C_associated_SNPs_17257 0 0 0 0 1 C2orf81 chr2:74643138 5'GT 74643138 Upstream 90bp
chr7 6634119 6634119 1 + C A BRCA 6634139 + 6634119 6634159 41 CTGCTGTTTGGTGCCGGGATCCATTCAGACGCTGAAGCAGA ATGCTGTTTGGTGCCGGGATCCATTCAGACGCTGAAGCAGA < 41bp 1 0.0464847537557415 1 0.255788266658783 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6634139 chr7:6634119 stopgain 1.000 1 1 hm5C_associated_SNPs_17259 0 0 1 0 1 C7orf26 chr7:6634066 3'AG 6634066 Downstream 54bp
chr9 139887830 139887830 1 + C A BRCA 139887814 + 139887794 139887834 41 GCTGCAGAAGAGACAGCTGTCAGCCCGAGGAAGAGCCCCCG GCTGCAGAAGAGACAGCTGTCAGCCCGAGGAAGAGCACCCG < 41bp 1 0.469580522423036 1 0.796630859375 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887814 chr9:139887830 nonsynonymous SNV 0.004 0 37 hm5C_associated_SNPs_17260 0 0 1 0 2 C9orf142 chr9:139887795 3'AG 139887795 Downstream 36bp
chr9 139887830 139887830 1 + C A BRCA 139887814 + 139887794 139887834 41 GCTGCAGAAGAGACAGCTGTCAGCCCGAGGAAGAGCCCCCG GCTGCAGAAGAGACAGCTGTCAGCCCGAGGAAGAGCACCCG < 41bp 1 0.469580522423036 1 0.796630859375 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887814 chr9:139887830 nonsynonymous SNV 0.004 0 37 hm5C_associated_SNPs_17260 0 0 1 0 2 C9orf142 chr9:139887863 5'GT 139887863 Upstream 34bp
chr9 95869982 95869982 1 + C G BRCA 95869992 + 95869972 95870012 41 CCGCCTGGTGCAGGACACGCCTTTCCTGACAGGCCATGGGC CCGCCTGGTGGAGGACACGCCTTTCCTGACAGGCCATGGGC < 41bp 1 0.0629020274428017 1 0.0597564280033112 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARD19 ENSG00000165233 CDS Human protein_coding chr9:95869992 chr9:95869982 nonsynonymous SNV 0.994 2 11 hm5C_associated_SNPs_17261 0 0 1 0 1 CARD19 chr9:95869956 3'AG 95869956 Downstream 27bp
chr5 179149818 179149818 1 + C T BRCA 179149810 + 179149790 179149830 41 CATTTTTTTTTCTAGGGAATCTGGAAACCCAGGAAAATACC CATTTTTTTTTCTAGGGAATCTGGAAACTCAGGAAAATACC < 41bp 1 0.713386262022264 1 0.630620002746582 experiment 0.573227475955472 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179149810 chr5:179149818 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_17263 0 0 1 0 1 CANX chr5:179149805 3'AG 179149805 Downstream 14bp
chr1 223934702 223934702 1 + C G BRCA 223934719 + 223934699 223934739 41 GATCAACGGATGCTATGAAGCGCTATCAGGGGGTGCCACCA GATGAACGGATGCTATGAAGCGCTATCAGGGGGTGCCACCA < 41bp 1 0.765123178568059 1 0.751827418804169 experiment 0.469753642863882 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223934719 chr1:223934702 nonsynonymous SNV 0.814 2 4 hm5C_associated_SNPs_17264 0 0 1 0 1 CAPN2 chr1:223934699 3'AG 223934699 Downstream 4bp
chr1 223934702 223934702 1 + C G BRCA 223934721 + 223934701 223934741 41 TCAACGGATGCTATGAAGCGCTATCAGGGGGTGCCACCACT TGAACGGATGCTATGAAGCGCTATCAGGGGGTGCCACCACT < 41bp 1 0.0648255202167866 1 0.0443982481956482 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223934721 chr1:223934702 nonsynonymous SNV 0.814 2 2 hm5C_associated_SNPs_17265 0 0 1 0 1 CAPN2 chr1:223934699 3'AG 223934699 Downstream 4bp
chr2 202141586 202141586 1 + C T BRCA 202141594 + 202141574 202141614 41 AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAATCA AAAAGCAAACCTTGGGGATACTGTCTGATCATCAACAATCA < 41bp 1 0.255699739046773 1 0.106071382761002 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CASP8 ENSG00000064012 CDS Human protein_coding chr2:202141594 chr2:202141586 nonsynonymous SNV 0.931 5 13 hm5C_associated_SNPs_17266 0 0 1 1 1 CASP8 chr2:202141550 3'AG 202141550 Downstream 37bp
chr11 119142562 119142562 1 + G A BRCA 119142558 + 119142538 119142578 41 TCGGATTACTAAAGCAGATGCTGCGGAATTTTGGAGAAAAG TCGGATTACTAAAGCAGATGCTGCAGAATTTTGGAGAAAAG < 41bp 1 0.436756540975962 1 0.397668749094009 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CBL ENSG00000110395 CDS Human protein_coding chr11:119142558 chr11:119142562 synonymous SNV . 0 25 hm5C_associated_SNPs_17267 0 0 1 0 1 CBL chr11:119142591 5'GT 119142591 Upstream 30bp
chr22 29177137 29177137 1 + G A BRCA 29177131 + 29177111 29177151 41 GAACCACAGTGTGAAGTTGCCCGAAGGAAGCTTCAGGAGAT GAACCACAGTGTGAAGTTGCCCGAAGAAAGCTTCAGGAGAT < 41bp 1 0.634056465780531 1 0.428922295570374 experiment 0.731887068438939 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC117 ENSG00000159873 CDS Human protein_coding chr22:29177131 chr22:29177137 synonymous SNV . 0 27 hm5C_associated_SNPs_17268 0 0 1 0 1 CCDC117 chr22:29177160 5'GT 29177160 Upstream 24bp
chr7 92926136 92926136 1 + A G BRCA 92926143 + 92926123 92926163 41 ATCTTTGTTTTGGATATAATCAGCAGGTAGTATTTAAGATC ATCTTTGTTTTGGGTATAATCAGCAGGTAGTATTTAAGATC < 41bp 1 0.795806821944433 1 0.869550168514252 experiment 0.408386356111134 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS50 ENSG00000004766 CDS Human protein_coding chr7:92926143 chr7:92926136 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_17269 0 0 1 1 2 VPS50 chr7:92926054 3'AG 92926054 Downstream 83bp
chr7 92926136 92926136 1 + A G BRCA 92926143 + 92926123 92926163 41 ATCTTTGTTTTGGATATAATCAGCAGGTAGTATTTAAGATC ATCTTTGTTTTGGGTATAATCAGCAGGTAGTATTTAAGATC < 41bp 1 0.795806821944433 1 0.869550168514252 experiment 0.408386356111134 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS50 ENSG00000004766 CDS Human protein_coding chr7:92926143 chr7:92926136 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_17269 0 0 1 1 2 VPS50 chr7:92926148 5'GT 92926148 Upstream 13bp
chrX 2641396 2641396 1 + G A BRCA 2641380 + 2641360 2641400 41 GGAGGCAGTGATGGTGGAGGCAGCCACAGGAAAGAAGGGGA GGAGGCAGTGATGGTGGAGGCAGCCACAGGAAAGAAAGGGA < 41bp 1 0.333662021760976 1 0.664326071739197 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD99 ENSG00000002586 CDS Human protein_coding chrX:2641380 chrX:2641396 nonsynonymous SNV 0.081 1 37 hm5C_associated_SNPs_17270 0 0 1 0 1 CD99 chrX:2641355 3'AG 2641355 Downstream 42bp
chrX 2641396 2641396 1 + G A BRCA 2641383 + 2641363 2641403 41 GGCAGTGATGGTGGAGGCAGCCACAGGAAAGAAGGGGAAGA GGCAGTGATGGTGGAGGCAGCCACAGGAAAGAAAGGGAAGA < 41bp 1 0.295139723145893 1 0.428235709667206 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CD99 ENSG00000002586 CDS Human protein_coding chrX:2641383 chrX:2641396 nonsynonymous SNV 0.081 1 34 hm5C_associated_SNPs_17271 0 0 1 0 1 CD99 chrX:2641355 3'AG 2641355 Downstream 42bp
chrX 2641396 2641396 1 + G A BRCA 2641384 + 2641364 2641404 41 GCAGTGATGGTGGAGGCAGCCACAGGAAAGAAGGGGAAGAG GCAGTGATGGTGGAGGCAGCCACAGGAAAGAAAGGGAAGAG < 41bp 1 0.62455952489402 1 0.58272248506546 experiment 0.750880950211961 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CD99 ENSG00000002586 CDS Human protein_coding chrX:2641384 chrX:2641396 nonsynonymous SNV 0.081 1 33 hm5C_associated_SNPs_17272 0 0 1 0 1 CD99 chrX:2641355 3'AG 2641355 Downstream 42bp
chrX 2641359 2641359 1 + A T BRCA 2641365 + 2641345 2641385 41 TGTCTTGCAGGAAAAGGAGGCAGTGATGGTGGAGGCAGCCA TGTCTTGCAGGAAATGGAGGCAGTGATGGTGGAGGCAGCCA < 41bp 1 0.318026301486666 1 0.624962210655212 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD99 ENSG00000002586 CDS Human protein_coding chrX:2641365 chrX:2641359 nonsynonymous SNV 0.001 0 15 hm5C_associated_SNPs_17273 0 0 1 0 1 CD99 chrX:2641355 3'AG 2641355 Downstream 5bp
chr5 130726778 130726778 1 + G A BRCA 130726785 + 130726765 130726805 41 TGGATACGAAGGCGGGATAGCCCTGGTCCTTTCTCCAGTGA TGGATACGAAGGCAGGATAGCCCTGGTCCTTTCTCCAGTGA < 41bp 1 0.490552043673063 1 0.0907153487205505 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDC42SE2 ENSG00000158985 CDS Human protein_coding chr5:130726785 chr5:130726778 synonymous SNV . 0 14 hm5C_associated_SNPs_17274 0 0 1 0 2 CDC42SE2 chr5:130726686 3'AG 130726686 Downstream 93bp
chr5 130726778 130726778 1 + G A BRCA 130726785 + 130726765 130726805 41 TGGATACGAAGGCGGGATAGCCCTGGTCCTTTCTCCAGTGA TGGATACGAAGGCAGGATAGCCCTGGTCCTTTCTCCAGTGA < 41bp 1 0.490552043673063 1 0.0907153487205505 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDC42SE2 ENSG00000158985 CDS Human protein_coding chr5:130726785 chr5:130726778 synonymous SNV . 0 14 hm5C_associated_SNPs_17274 0 0 1 0 2 CDC42SE2 chr5:130726801 5'GT 130726801 Upstream 24bp
chr6 44360503 44360503 1 + G A BRCA 44360506 + 44360486 44360526 41 ATGCCAACTCAGTGGAGGACCATTGCTCCAATCATTGGAAG ATGCCAACTCAGTGGAGAACCATTGCTCCAATCATTGGAAG < 41bp 1 0.381962470199767 1 0.373475790023804 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC5L ENSG00000096401 CDS Human protein_coding chr6:44360506 chr6:44360503 synonymous SNV . 0 18 hm5C_associated_SNPs_17275 0 0 1 0 2 CDC5L chr6:44360404 3'AG 44360404 Downstream 100bp
chr6 44360503 44360503 1 + G A BRCA 44360506 + 44360486 44360526 41 ATGCCAACTCAGTGGAGGACCATTGCTCCAATCATTGGAAG ATGCCAACTCAGTGGAGAACCATTGCTCCAATCATTGGAAG < 41bp 1 0.381962470199767 1 0.373475790023804 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC5L ENSG00000096401 CDS Human protein_coding chr6:44360506 chr6:44360503 synonymous SNV . 0 18 hm5C_associated_SNPs_17275 0 0 1 0 2 CDC5L chr6:44360565 5'GT 44360565 Upstream 63bp
chr20 5163085 5163085 1 + C G BRCA 5163068 + 5163048 5163088 41 TACTGAGTCTGGTCAAGAAGCATTATCGACTGCAGTTCTAC TACTGAGTCTGGTCAAGAAGCATTATCGACTGCAGTTGTAC < 41bp 1 0.172425129232482 1 0.0466034710407257 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDS2 ENSG00000101290 CDS Human protein_coding chr20:5163068 chr20:5163085 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_17276 0 0 1 0 2 CDS2 chr20:5163033 3'AG 5163033 Downstream 53bp
chr20 5163085 5163085 1 + C G BRCA 5163068 + 5163048 5163088 41 TACTGAGTCTGGTCAAGAAGCATTATCGACTGCAGTTCTAC TACTGAGTCTGGTCAAGAAGCATTATCGACTGCAGTTGTAC < 41bp 1 0.172425129232482 1 0.0466034710407257 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDS2 ENSG00000101290 CDS Human protein_coding chr20:5163068 chr20:5163085 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_17276 0 0 1 0 2 CDS2 chr20:5163091 5'GT 5163091 Upstream 7bp
chr1 22332186 22332186 1 + G A BRCA 22332166 + 22332146 22332186 41 TGCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTG TGCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTA < 41bp 1 0.0693545243753377 1 0.138853281736374 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332166 chr1:22332186 nonsynonymous SNV 0.037 1 41 hm5C_associated_SNPs_17277 0 0 0 0 1 CELA3A chr1:22332155 3'AG 22332155 Downstream 32bp
chr1 22332186 22332186 1 + G A BRCA 22332167 + 22332147 22332187 41 GCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTGA GCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTAA < 41bp 1 0.517384128543547 1 0.0767273604869843 experiment 0.965231742912907 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332167 chr1:22332186 nonsynonymous SNV 0.037 1 40 hm5C_associated_SNPs_17278 0 0 0 0 1 CELA3A chr1:22332155 3'AG 22332155 Downstream 32bp
chr1 22332186 22332186 1 + G A BRCA 22332170 + 22332150 22332190 41 TGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTGAGTA TGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTAAGTA < 41bp 1 0.456760516597073 1 0.420293509960175 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332170 chr1:22332186 nonsynonymous SNV 0.037 1 37 hm5C_associated_SNPs_17279 0 0 0 0 1 CELA3A chr1:22332155 3'AG 22332155 Downstream 32bp
chr1 22332186 22332186 1 + G A BRCA 22332191 + 22332171 22332211 41 CAGGTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGG CAGGTGGTGTTGGGTAAGTACAACCTTGCTGTGAAGGAGGG < 41bp 1 0.384999677872021 1 0.283089220523834 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332191 chr1:22332186 nonsynonymous SNV 0.037 1 16 hm5C_associated_SNPs_17280 0 0 0 0 1 CELA3A chr1:22332155 3'AG 22332155 Downstream 32bp
chr1 22332186 22332186 1 + G A BRCA 22332194 + 22332174 22332214 41 GTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCC GTGGTGTTGGGTAAGTACAACCTTGCTGTGAAGGAGGGCCC < 41bp 1 0.0874202388841005 1 0.225413680076599 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332194 chr1:22332186 nonsynonymous SNV 0.037 1 13 hm5C_associated_SNPs_17281 0 0 0 0 1 CELA3A chr1:22332155 3'AG 22332155 Downstream 32bp
chr1 22332186 22332186 1 + G A BRCA 22332195 + 22332175 22332215 41 TGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCC TGGTGTTGGGTAAGTACAACCTTGCTGTGAAGGAGGGCCCC < 41bp 1 0.482162285810494 1 0.124218344688416 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332195 chr1:22332186 nonsynonymous SNV 0.037 1 12 hm5C_associated_SNPs_17282 0 0 0 0 1 CELA3A chr1:22332155 3'AG 22332155 Downstream 32bp
chr1 22332186 22332186 1 + G A BRCA 22332199 + 22332179 22332219 41 GTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCCGAGC GTTGGGTAAGTACAACCTTGCTGTGAAGGAGGGCCCCGAGC < 41bp 1 0.612530559698454 1 0.0815833508968353 experiment 0.774938880603092 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332199 chr1:22332186 nonsynonymous SNV 0.037 1 8 hm5C_associated_SNPs_17283 0 0 0 0 1 CELA3A chr1:22332155 3'AG 22332155 Downstream 32bp
chr1 22307568 22307568 1 + G A BRCA 22307561 + 22307541 22307581 41 ACCTACCAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAA ACCTACCAGGTGGTGTTGGGCGAGTACAACCGTGCTGTGAA < 41bp 1 0.625632257866794 1 0.518433690071106 experiment 0.748735484266411 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307561 chr1:22307568 nonsynonymous SNV 0.001 1 28 hm5C_associated_SNPs_17284 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 38bp
chr1 22307568 22307568 1 + G A BRCA 22307561 + 22307541 22307581 41 ACCTACCAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAA ACCTACCAGGTGGTGTTGGGCGAGTACAACCGTGCTGTGAA < 41bp 1 0.625632257866794 1 0.518433690071106 experiment 0.748735484266411 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307561 chr1:22307568 nonsynonymous SNV 0.001 1 28 hm5C_associated_SNPs_17284 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 98bp
chr1 22307568 22307568 1 + G A BRCA 22307567 + 22307547 22307587 41 CAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGG CAGGTGGTGTTGGGCGAGTACAACCGTGCTGTGAAGGAGGG < 41bp 1 0.360974931647118 1 0.413004577159882 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307567 chr1:22307568 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_17285 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 38bp
chr1 22307568 22307568 1 + G A BRCA 22307567 + 22307547 22307587 41 CAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGG CAGGTGGTGTTGGGCGAGTACAACCGTGCTGTGAAGGAGGG < 41bp 1 0.360974931647118 1 0.413004577159882 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307567 chr1:22307568 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_17285 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 98bp
chr1 22307568 22307568 1 + G A BRCA 22307570 + 22307550 22307590 41 GTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCC GTGGTGTTGGGCGAGTACAACCGTGCTGTGAAGGAGGGCCC < 41bp 1 0.367345774188158 1 0.702282249927521 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307570 chr1:22307568 nonsynonymous SNV 0.001 1 19 hm5C_associated_SNPs_17286 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 38bp
chr1 22307568 22307568 1 + G A BRCA 22307570 + 22307550 22307590 41 GTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCC GTGGTGTTGGGCGAGTACAACCGTGCTGTGAAGGAGGGCCC < 41bp 1 0.367345774188158 1 0.702282249927521 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307570 chr1:22307568 nonsynonymous SNV 0.001 1 19 hm5C_associated_SNPs_17286 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 98bp
chr1 22307568 22307568 1 + G A BRCA 22307575 + 22307555 22307595 41 GTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCCCGAGC GTTGGGCGAGTACAACCGTGCTGTGAAGGAGGGCCCCGAGC < 41bp 1 0.503058015157978 1 0.0909658968448639 experiment 0.993883969684043 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307575 chr1:22307568 nonsynonymous SNV 0.001 1 14 hm5C_associated_SNPs_17287 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 38bp
chr1 22307568 22307568 1 + G A BRCA 22307575 + 22307555 22307595 41 GTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCCCGAGC GTTGGGCGAGTACAACCGTGCTGTGAAGGAGGGCCCCGAGC < 41bp 1 0.503058015157978 1 0.0909658968448639 experiment 0.993883969684043 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307575 chr1:22307568 nonsynonymous SNV 0.001 1 14 hm5C_associated_SNPs_17287 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 98bp
chr1 22307568 22307568 1 + G A BRCA 22307588 + 22307568 22307608 41 GACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT AACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT < 41bp 1 0.231030905036163 1 0.134238660335541 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307588 chr1:22307568 nonsynonymous SNV 0.001 1 1 hm5C_associated_SNPs_17288 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 38bp
chr1 22307568 22307568 1 + G A BRCA 22307588 + 22307568 22307608 41 GACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT AACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT < 41bp 1 0.231030905036163 1 0.134238660335541 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307588 chr1:22307568 nonsynonymous SNV 0.001 1 1 hm5C_associated_SNPs_17288 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 98bp
chr18 13057640 13057640 1 + G A BRCA 13057639 + 13057619 13057659 41 CATGCTTGCTGTGTCGGGATCGCTTCCCAGACCCTCCTCAG CATGCTTGCTGTGTCGGGATCACTTCCCAGACCCTCCTCAG < 41bp 1 0.265275281004078 1 0.107340753078461 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13057639 chr18:13057640 nonsynonymous SNV 0.943 2 22 hm5C_associated_SNPs_17289 0 0 1 0 2 CEP192 chr18:13057584 3'AG 13057584 Downstream 57bp
chr18 13057640 13057640 1 + G A BRCA 13057639 + 13057619 13057659 41 CATGCTTGCTGTGTCGGGATCGCTTCCCAGACCCTCCTCAG CATGCTTGCTGTGTCGGGATCACTTCCCAGACCCTCCTCAG < 41bp 1 0.265275281004078 1 0.107340753078461 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13057639 chr18:13057640 nonsynonymous SNV 0.943 2 22 hm5C_associated_SNPs_17289 0 0 1 0 2 CEP192 chr18:13057732 5'GT 13057732 Upstream 93bp
chr16 67006796 67006796 1 + C T BRCA 67006809 + 67006789 67006829 41 CCCAATTCAACCAGGCGGAACAATATCTGGAGATCAACCCA CCCAATTTAACCAGGCGGAACAATATCTGGAGATCAACCCA < 41bp 1 0.301215573003345 1 0.307879149913788 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:67006809 chr16:67006796 synonymous SNV . 0 8 hm5C_associated_SNPs_17291 0 0 1 0 1 CES3 chr16:67006757 3'AG 67006757 Downstream 40bp
chr19 4442293 4442293 1 + G A BRCA 4442277 + 4442257 4442297 41 ATGGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAGAGGA ATGGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAAAGGA < 41bp 1 0.632526066252781 1 0.290593087673187 experiment 0.734947867494438 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442277 chr19:4442293 nonsynonymous SNV 0.987 2 37 hm5C_associated_SNPs_17292 0 0 1 0 2 CHAF1A chr19:4442242 3'AG 4442242 Downstream 52bp
chr19 4442293 4442293 1 + G A BRCA 4442277 + 4442257 4442297 41 ATGGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAGAGGA ATGGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAAAGGA < 41bp 1 0.632526066252781 1 0.290593087673187 experiment 0.734947867494438 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442277 chr19:4442293 nonsynonymous SNV 0.987 2 37 hm5C_associated_SNPs_17292 0 0 1 0 2 CHAF1A chr19:4442338 5'GT 4442338 Upstream 46bp
chr19 4442293 4442293 1 + G A BRCA 4442279 + 4442259 4442299 41 GGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAGAGGAGG GGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAAAGGAGG < 41bp 1 0.705161539594932 1 0.683872699737549 experiment 0.589676920810136 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442279 chr19:4442293 nonsynonymous SNV 0.987 2 35 hm5C_associated_SNPs_17293 0 0 1 0 2 CHAF1A chr19:4442242 3'AG 4442242 Downstream 52bp
chr19 4442293 4442293 1 + G A BRCA 4442279 + 4442259 4442299 41 GGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAGAGGAGG GGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAAAGGAGG < 41bp 1 0.705161539594932 1 0.683872699737549 experiment 0.589676920810136 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442279 chr19:4442293 nonsynonymous SNV 0.987 2 35 hm5C_associated_SNPs_17293 0 0 1 0 2 CHAF1A chr19:4442338 5'GT 4442338 Upstream 46bp
chr17 7798780 7798780 1 + C T BRCA 7798785 + 7798765 7798805 41 CCCCCCCGTCCTCTTCAAGGCAGATCAGAGCGAGAGTTCTT CCCCCCCGTCCTCTTTAAGGCAGATCAGAGCGAGAGTTCTT < 41bp 1 0.129554995740629 1 0.237775444984436 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7798785 chr17:7798780 stopgain 1.000 1 16 hm5C_associated_SNPs_17294 0 0 0 0 1 CHD3 chr17:7798860 5'GT 7798860 Upstream 81bp
chr8 23114072 23114072 1 + C T BRCA 23114068 + 23114048 23114088 41 ATGCAGAGTGAACAGCTTCTCTCACGCAAAGTGGAGTCCTT ATGCAGAGTGAACAGCTTCTCTCATGCAAAGTGGAGTCCTT < 41bp 1 0.513983171880358 1 0.120754420757294 experiment 0.972033656239284 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23114068 chr8:23114072 nonsynonymous SNV 0.705 3 25 hm5C_associated_SNPs_17295 0 0 1 0 2 CHMP7 chr8:23113973 3'AG 23113973 Downstream 100bp
chr8 23114072 23114072 1 + C T BRCA 23114068 + 23114048 23114088 41 ATGCAGAGTGAACAGCTTCTCTCACGCAAAGTGGAGTCCTT ATGCAGAGTGAACAGCTTCTCTCATGCAAAGTGGAGTCCTT < 41bp 1 0.513983171880358 1 0.120754420757294 experiment 0.972033656239284 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23114068 chr8:23114072 nonsynonymous SNV 0.705 3 25 hm5C_associated_SNPs_17295 0 0 1 0 2 CHMP7 chr8:23114106 5'GT 23114106 Upstream 35bp
chr8 23114072 23114072 1 + C T BRCA 23114070 + 23114050 23114090 41 GCAGAGTGAACAGCTTCTCTCACGCAAAGTGGAGTCCTTAT GCAGAGTGAACAGCTTCTCTCATGCAAAGTGGAGTCCTTAT < 41bp 1 0.278313723268212 1 0.0988568961620331 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23114070 chr8:23114072 nonsynonymous SNV 0.705 3 23 hm5C_associated_SNPs_17296 0 0 1 0 2 CHMP7 chr8:23113973 3'AG 23113973 Downstream 100bp
chr8 23114072 23114072 1 + C T BRCA 23114070 + 23114050 23114090 41 GCAGAGTGAACAGCTTCTCTCACGCAAAGTGGAGTCCTTAT GCAGAGTGAACAGCTTCTCTCATGCAAAGTGGAGTCCTTAT < 41bp 1 0.278313723268212 1 0.0988568961620331 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23114070 chr8:23114072 nonsynonymous SNV 0.705 3 23 hm5C_associated_SNPs_17296 0 0 1 0 2 CHMP7 chr8:23114106 5'GT 23114106 Upstream 35bp
chr3 184104637 184104637 1 + G A BRCA 184104655 + 184104635 184104675 41 ACGAACGGTGATCTGTGACCCGGTGGTGTGCCCACCGCCCA ACAAACGGTGATCTGTGACCCGGTGGTGTGCCCACCGCCCA < 41bp 1 0.742536268156401 1 0.669380068778992 experiment 0.514927463687198 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CHRD ENSG00000090539 CDS Human protein_coding chr3:184104655 chr3:184104637 nonsynonymous SNV 0.600 2 3 hm5C_associated_SNPs_17297 0 0 1 0 2 CHRD chr3:184104633 3'AG 184104633 Downstream 5bp
chr3 184104637 184104637 1 + G A BRCA 184104655 + 184104635 184104675 41 ACGAACGGTGATCTGTGACCCGGTGGTGTGCCCACCGCCCA ACAAACGGTGATCTGTGACCCGGTGGTGTGCCCACCGCCCA < 41bp 1 0.742536268156401 1 0.669380068778992 experiment 0.514927463687198 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CHRD ENSG00000090539 CDS Human protein_coding chr3:184104655 chr3:184104637 nonsynonymous SNV 0.600 2 3 hm5C_associated_SNPs_17297 0 0 1 0 2 CHRD chr3:184104726 5'GT 184104726 Upstream 90bp
chr3 32493950 32493950 1 + G A BRCA 32493943 + 32493923 32493963 41 ATATGGCTGTCCTATAAGATCTCGTGTGTAACCCAGTCCAC ATATGGCTGTCCTATAAGATCTCGTGTATAACCCAGTCCAC < 41bp 1 0.755708421049899 1 0.192830502986908 experiment 0.488583157900202 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32493943 chr3:32493950 nonsynonymous SNV 0.239 0 28 hm5C_associated_SNPs_17302 0 0 0 0 2 CMTM7 chr3:32493884 3'AG 32493884 Downstream 67bp
chr3 32493950 32493950 1 + G A BRCA 32493943 + 32493923 32493963 41 ATATGGCTGTCCTATAAGATCTCGTGTGTAACCCAGTCCAC ATATGGCTGTCCTATAAGATCTCGTGTATAACCCAGTCCAC < 41bp 1 0.755708421049899 1 0.192830502986908 experiment 0.488583157900202 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32493943 chr3:32493950 nonsynonymous SNV 0.239 0 28 hm5C_associated_SNPs_17302 0 0 0 0 2 CMTM7 chr3:32493965 5'GT 32493965 Upstream 16bp
chr9 101765816 101765816 1 + G T BRCA 101765812 + 101765792 101765832 41 GCAGAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTC GCAGAGGCCAGCAGTGTGCCCACCTGGGGACCAACCCTCTC < 41bp 1 0.548966605380344 1 0.131068140268326 experiment 0.902066789239311 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765812 chr9:101765816 nonsynonymous SNV 0.000 3 25 hm5C_associated_SNPs_17304 0 0 0 0 2 COL15A1 chr9:101765735 3'AG 101765735 Downstream 82bp
chr9 101765816 101765816 1 + G T BRCA 101765812 + 101765792 101765832 41 GCAGAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTC GCAGAGGCCAGCAGTGTGCCCACCTGGGGACCAACCCTCTC < 41bp 1 0.548966605380344 1 0.131068140268326 experiment 0.902066789239311 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765812 chr9:101765816 nonsynonymous SNV 0.000 3 25 hm5C_associated_SNPs_17304 0 0 0 0 2 COL15A1 chr9:101765869 5'GT 101765869 Upstream 54bp
chr9 101765816 101765816 1 + G T BRCA 101765814 + 101765794 101765834 41 AGAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTCTA AGAGGCCAGCAGTGTGCCCACCTGGGGACCAACCCTCTCTA < 41bp 1 0.375346783077983 1 0.77541196346283 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765814 chr9:101765816 nonsynonymous SNV 0.000 3 23 hm5C_associated_SNPs_17305 0 0 0 0 2 COL15A1 chr9:101765735 3'AG 101765735 Downstream 82bp
chr9 101765816 101765816 1 + G T BRCA 101765814 + 101765794 101765834 41 AGAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTCTA AGAGGCCAGCAGTGTGCCCACCTGGGGACCAACCCTCTCTA < 41bp 1 0.375346783077983 1 0.77541196346283 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765814 chr9:101765816 nonsynonymous SNV 0.000 3 23 hm5C_associated_SNPs_17305 0 0 0 0 2 COL15A1 chr9:101765869 5'GT 101765869 Upstream 54bp
chr9 101765816 101765816 1 + G T BRCA 101765832 + 101765812 101765852 41 CACCGGGGGACCAACCCTCTCTATGTCCACGGAGAACCCAG CACCTGGGGACCAACCCTCTCTATGTCCACGGAGAACCCAG < 41bp 1 0.266488765513418 1 0.205458015203476 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765832 chr9:101765816 nonsynonymous SNV 0.000 3 5 hm5C_associated_SNPs_17306 0 0 0 0 2 COL15A1 chr9:101765735 3'AG 101765735 Downstream 82bp
chr9 101765816 101765816 1 + G T BRCA 101765832 + 101765812 101765852 41 CACCGGGGGACCAACCCTCTCTATGTCCACGGAGAACCCAG CACCTGGGGACCAACCCTCTCTATGTCCACGGAGAACCCAG < 41bp 1 0.266488765513418 1 0.205458015203476 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765832 chr9:101765816 nonsynonymous SNV 0.000 3 5 hm5C_associated_SNPs_17306 0 0 0 0 2 COL15A1 chr9:101765869 5'GT 101765869 Upstream 54bp
chr3 148559668 148559668 1 + G A BRCA 148559686 + 148559666 148559706 41 CAGAGAGTGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAA CAAAGAGTGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAA < 41bp 1 0.0583673590638886 1 0.0300377011299133 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559686 chr3:148559668 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_17307 0 0 0 0 2 CPB1 chr3:148559610 3'AG 148559610 Downstream 59bp
chr3 148559668 148559668 1 + G A BRCA 148559686 + 148559666 148559706 41 CAGAGAGTGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAA CAAAGAGTGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAA < 41bp 1 0.0583673590638886 1 0.0300377011299133 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559686 chr3:148559668 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_17307 0 0 0 0 2 CPB1 chr3:148559711 5'GT 148559711 Upstream 44bp
chr16 57153125 57153125 1 + G C BRCA 57153128 + 57153108 57153148 41 ACCTCTTTGGGAAGTCAGACCCCTTTCTGGAGTTTTATAAG ACCTCTTTGGGAAGTCACACCCCTTTCTGGAGTTTTATAAG < 41bp 1 0.0592762405349981 1 0.0835315585136414 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57153128 chr16:57153125 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_17308 0 0 0 0 2 CPNE2 chr16:57153107 3'AG 57153107 Downstream 19bp
chr16 57153125 57153125 1 + G C BRCA 57153128 + 57153108 57153148 41 ACCTCTTTGGGAAGTCAGACCCCTTTCTGGAGTTTTATAAG ACCTCTTTGGGAAGTCACACCCCTTTCTGGAGTTTTATAAG < 41bp 1 0.0592762405349981 1 0.0835315585136414 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57153128 chr16:57153125 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_17308 0 0 0 0 2 CPNE2 chr16:57153190 5'GT 57153190 Upstream 66bp
chr9 35733103 35733103 1 + C G BRCA 35733112 + 35733092 35733132 41 CATGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTAT CATGACCACACGTACTCCCTCCCACGGGAAACTGTCTCTAT < 41bp 1 0.144283842368741 1 0.136001586914062 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733112 chr9:35733103 synonymous SNV . 0 12 hm5C_associated_SNPs_17309 0 0 1 0 1 CREB3 chr9:35733140 5'GT 35733140 Upstream 38bp
chr9 35733103 35733103 1 + C G BRCA 35733113 + 35733093 35733133 41 ATGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTATG ATGACCACACGTACTCCCTCCCACGGGAAACTGTCTCTATG < 41bp 1 0.16050967340135 1 0.182448983192444 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733113 chr9:35733103 synonymous SNV . 0 11 hm5C_associated_SNPs_17310 0 0 1 0 1 CREB3 chr9:35733140 5'GT 35733140 Upstream 38bp
chr2 36668460 36668460 1 + G A BRCA 36668446 + 36668426 36668466 41 CCGCTGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATT CCGCTGTGAAGTCCAGTTCTCTCCACGTTGTCCTAAAGATT < 41bp 1 0.62793930195019 1 0.715425372123718 experiment 0.74412139609962 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36668446 chr2:36668460 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_17311 0 0 1 0 1 CRIM1 chr2:36668401 3'AG 36668401 Downstream 60bp
chr2 36668460 36668460 1 + G A BRCA 36668448 + 36668428 36668468 41 GCTGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATTCT GCTGTGAAGTCCAGTTCTCTCCACGTTGTCCTAAAGATTCT < 41bp 1 0.527981222846848 1 0.501047313213348 experiment 0.944037554306304 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36668448 chr2:36668460 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_17312 0 0 1 0 1 CRIM1 chr2:36668401 3'AG 36668401 Downstream 60bp
chr5 64267547 64267547 1 + G A BRCA 64267545 + 64267525 64267565 41 TTTAGAGGAAGAAGCCCCTCCAGATGGTGCTGTTGCCGAAT TTTAGAGGAAGAAGCCCCTCCAAATGGTGCTGTTGCCGAAT < 41bp 1 0.161117283176351 1 0.666225910186768 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64267545 chr5:64267547 nonsynonymous SNV 0.978 1 23 hm5C_associated_SNPs_17317 0 0 1 0 2 CWC27 chr5:64267530 3'AG 64267530 Downstream 18bp
chr5 64267547 64267547 1 + G A BRCA 64267545 + 64267525 64267565 41 TTTAGAGGAAGAAGCCCCTCCAGATGGTGCTGTTGCCGAAT TTTAGAGGAAGAAGCCCCTCCAAATGGTGCTGTTGCCGAAT < 41bp 1 0.161117283176351 1 0.666225910186768 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64267545 chr5:64267547 nonsynonymous SNV 0.978 1 23 hm5C_associated_SNPs_17317 0 0 1 0 2 CWC27 chr5:64267639 5'GT 64267639 Upstream 93bp
chr19 41711922 41711922 1 + C A BRCA 41711910 + 41711890 41711930 41 TCCATCCTGCATGACCCCAACATCTTCAAGCACCCAGAAGA TCCATCCTGCATGACCCCAACATCTTCAAGCAACCAGAAGA < 41bp 1 0.0911277325510972 1 0.058115690946579 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41711910 chr19:41711922 nonsynonymous SNV 0.107 0 33 hm5C_associated_SNPs_17321 0 0 0 0 2 CYP2S1 chr19:41711863 3'AG 41711863 Downstream 60bp
chr19 41711922 41711922 1 + C A BRCA 41711910 + 41711890 41711930 41 TCCATCCTGCATGACCCCAACATCTTCAAGCACCCAGAAGA TCCATCCTGCATGACCCCAACATCTTCAAGCAACCAGAAGA < 41bp 1 0.0911277325510972 1 0.058115690946579 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41711910 chr19:41711922 nonsynonymous SNV 0.107 0 33 hm5C_associated_SNPs_17321 0 0 0 0 2 CYP2S1 chr19:41712004 5'GT 41712004 Upstream 83bp
chr1 162729697 162729697 1 + C T BRCA 162729706 + 162729686 162729726 41 GGCTGGCGGAACGAGAGTGCCACCAATGGCTACATTGAGAT GGCTGGCGGAATGAGAGTGCCACCAATGGCTACATTGAGAT < 41bp 1 0.763001259876851 1 0.33502072095871 experiment 0.473997480246298 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162729706 chr1:162729697 synonymous SNV . 0 12 hm5C_associated_SNPs_17324 0 0 0 0 1 DDR2 chr1:162729769 5'GT 162729769 Upstream 73bp
chr2 118582184 118582184 1 + G A BRCA 118582181 + 118582161 118582201 41 GCTCTTTTCTGCCACCCAAACTCGAAAAGTTGAAGACCTGG GCTCTTTTCTGCCACCCAAACTCAAAAAGTTGAAGACCTGG < 41bp 1 0.739179088892874 1 0.431400805711746 experiment 0.521641822214251 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118582181 chr2:118582184 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_17325 0 0 1 0 1 DDX18 chr2:118582145 3'AG 118582145 Downstream 40bp
chr10 70737326 70737326 1 + A G BRCA 70737312 + 70737292 70737332 41 GATTCCGTGCCTCCCACTGCCATTAGTCACTTCAAACAATC GATTCCGTGCCTCCCACTGCCATTAGTCACTTCAGACAATC < 41bp 1 0.413565739723197 1 0.0159196853637695 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX21 ENSG00000165732 CDS Human protein_coding chr10:70737312 chr10:70737326 nonsynonymous SNV 0.998 1 35 hm5C_associated_SNPs_17326 0 0 1 0 1 DDX21 chr10:70737285 3'AG 70737285 Downstream 42bp
chr10 70737298 70737298 1 + G A BRCA 70737312 + 70737292 70737332 41 GATTCCGTGCCTCCCACTGCCATTAGTCACTTCAAACAATC GATTCCATGCCTCCCACTGCCATTAGTCACTTCAAACAATC < 41bp 1 0.403141327832424 1 0.0113374292850494 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX21 ENSG00000165732 CDS Human protein_coding chr10:70737312 chr10:70737298 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_17327 0 0 1 0 1 DDX21 chr10:70737285 3'AG 70737285 Downstream 14bp
chr21 47978254 47978254 1 + G A BRCA 47978252 + 47978232 47978272 41 AAGGACCTGGGCCTGCCGGCCCGCGCCGTAAGCACCACGTT AAGGACCTGGGCCTGCCGGCCCACGCCGTAAGCACCACGTT < 41bp 1 0.202694271485687 1 0.300191879272461 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47978252 chr21:47978254 nonsynonymous SNV 0.125 4 23 hm5C_associated_SNPs_17329 0 0 1 0 1 DIP2A chr21:47978306 5'GT 47978306 Upstream 53bp
chr20 31374344 31374344 1 + G A BRCA 31374361 + 31374341 31374381 41 CGGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCG CGGAAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCG < 41bp 1 0.339033094924769 1 0.502367794513702 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374361 chr20:31374344 nonsynonymous SNV 0.729 1 4 hm5C_associated_SNPs_17331 0 0 0 0 1 DNMT3B chr20:31374308 3'AG 31374308 Downstream 37bp
chr20 31374344 31374344 1 + G A BRCA 31374362 + 31374342 31374382 41 GGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCGG GGAAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCGG < 41bp 1 0.626523929814516 1 0.520589351654053 experiment 0.746952140370969 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374362 chr20:31374344 nonsynonymous SNV 0.729 1 3 hm5C_associated_SNPs_17332 0 0 0 0 1 DNMT3B chr20:31374308 3'AG 31374308 Downstream 37bp
chr8 25149578 25149578 1 + G A BRCA 25149584 + 25149564 25149604 41 CAGCTGCAGCAGATGACGTACAGCCTGATCGAGTGGCGGTC CAGCTGCAGCAGATAACGTACAGCCTGATCGAGTGGCGGTC < 41bp 1 0.246530105979187 1 0.202793091535568 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25149584 chr8:25149578 nonsynonymous SNV 0.996 2 15 hm5C_associated_SNPs_17333 0 0 1 0 1 DOCK5 chr8:25149540 3'AG 25149540 Downstream 39bp
chr21 38853104 38853104 1 + G C BRCA 38853089 + 38853069 38853109 41 GAAAAGTGGATGGATCGTTACGAAATTGACTCCTTGATAGG GAAAAGTGGATGGATCGTTACGAAATTGACTCCTTCATAGG < 41bp 1 0.665634979165957 1 0.835657596588135 experiment 0.668730041668085 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38853089 chr21:38853104 nonsynonymous SNV 0.999 4 36 hm5C_associated_SNPs_17335 0 0 1 0 1 DYRK1A chr21:38853128 5'GT 38853128 Upstream 25bp
chr16 67917881 67917881 1 + C A BRCA 67917892 + 67917872 67917912 41 GCCGTGATGCACCTGGACCACAGTGACCCCATCACTCGGGA GCCGTGATGAACCTGGACCACAGTGACCCCATCACTCGGGA < 41bp 1 0.496169500150264 1 0.25502610206604 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67917892 chr16:67917881 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_17336 0 0 1 0 1 EDC4 chr16:67917859 3'AG 67917859 Downstream 23bp
chr1 155058975 155058975 1 + G T BRCA 155058986 + 155058966 155059006 41 CTGCCCCTGGCCGTGGGCATCGCCTTCTTCCTCATGACGTT CTGCCCCTGTCCGTGGGCATCGCCTTCTTCCTCATGACGTT < 41bp 1 0.504857901845175 1 0.386984765529633 experiment 0.990284196309649 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNA3 ENSG00000143590;ENSG00000251246 CDS Human other chr1:155058986 chr1:155058975 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_17337 0 0 0 0 1 EFNA3 chr1:155058889 3'AG 155058889 Downstream 87bp
chr1 36358824 36358824 1 + C G BRCA 36358839 + 36358819 36358859 41 CTGTTCCCTTGGAGTCTGTGCAAGCCCTGGATGTGGCCATG CTGTTGCCTTGGAGTCTGTGCAAGCCCTGGATGTGGCCATG < 41bp 1 0.352373186708627 1 0.284176111221313 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGO1 ENSG00000092847 CDS Human protein_coding chr1:36358839 chr1:36358824 nonsynonymous SNV 0.996 3 6 hm5C_associated_SNPs_17338 0 0 1 0 1 AGO1 chr1:36358879 5'GT 36358879 Upstream 56bp
chr14 103802230 103802230 1 + C G BRCA 103802231 + 103802211 103802251 41 TCAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATG TCAACCGCAGCGTGTCAGAGCAGTTCTATCGCTACAAGATG < 41bp 1 0.178291246064998 1 0.112993866205215 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103802231 chr14:103802230 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_17339 0 0 1 0 1 EIF5 chr14:103802269 5'GT 103802269 Upstream 40bp
chr20 25205861 25205861 1 + C G BRCA 25205875 + 25205855 25205895 41 GAGACACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT GAGACAGAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT < 41bp 1 0.189038481096984 1 0.0313067138195038 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25205875 chr20:25205861 nonsynonymous SNV 0.007 0 7 hm5C_associated_SNPs_17373 0 0 1 0 3 ENTPD6 chr20:25205798 3'AG 25205798 Downstream 64bp
chr20 25205861 25205861 1 + C G BRCA 25205875 + 25205855 25205895 41 GAGACACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT GAGACAGAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT < 41bp 1 0.189038481096984 1 0.0313067138195038 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25205875 chr20:25205861 nonsynonymous SNV 0.007 0 7 hm5C_associated_SNPs_17373 0 0 1 0 3 ENTPD6 chr20:25205841 3'AG 25205841 Downstream 21bp
chr20 25205861 25205861 1 + C G BRCA 25205875 + 25205855 25205895 41 GAGACACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT GAGACAGAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT < 41bp 1 0.189038481096984 1 0.0313067138195038 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25205875 chr20:25205861 nonsynonymous SNV 0.007 0 7 hm5C_associated_SNPs_17373 0 0 1 0 3 ENTPD6 chr20:25205953 5'GT 25205953 Upstream 93bp
chr8 27369412 27369412 1 + G C BRCA 27369415 + 27369395 27369435 41 AGTGACATGAGCCATGGGTACGTGACAGTAAAGGTGAGTCA AGTGACATGAGCCATGGCTACGTGACAGTAAAGGTGAGTCA < 41bp 1 0.663881022971706 1 0.42305713891983 experiment 0.672237954056589 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27369415 chr8:27369412 synonymous SNV . 0 18 hm5C_associated_SNPs_17374 0 0 1 0 2 EPHX2 chr8:27369353 3'AG 27369353 Downstream 60bp
chr8 27369412 27369412 1 + G C BRCA 27369415 + 27369395 27369435 41 AGTGACATGAGCCATGGGTACGTGACAGTAAAGGTGAGTCA AGTGACATGAGCCATGGCTACGTGACAGTAAAGGTGAGTCA < 41bp 1 0.663881022971706 1 0.42305713891983 experiment 0.672237954056589 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27369415 chr8:27369412 synonymous SNV . 0 18 hm5C_associated_SNPs_17374 0 0 1 0 2 EPHX2 chr8:27369427 5'GT 27369427 Upstream 16bp
chr19 7918195 7918195 1 + G A BRCA 7918189 + 7918169 7918209 41 GAGTACGCAGCCATGAAGAGCAAGGAGATGGAGGAGCAGAT GAGTACGCAGCCATGAAGAGCAAGGAAATGGAGGAGCAGAT < 41bp 1 0.313542317351879 1 0.503418862819672 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EVI5L ENSG00000142459 CDS Human protein_coding chr19:7918189 chr19:7918195 synonymous SNV . 0 27 hm5C_associated_SNPs_17375 0 0 0 0 2 EVI5L chr19:7918159 3'AG 7918159 Downstream 37bp
chr19 7918195 7918195 1 + G A BRCA 7918189 + 7918169 7918209 41 GAGTACGCAGCCATGAAGAGCAAGGAGATGGAGGAGCAGAT GAGTACGCAGCCATGAAGAGCAAGGAAATGGAGGAGCAGAT < 41bp 1 0.313542317351879 1 0.503418862819672 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EVI5L ENSG00000142459 CDS Human protein_coding chr19:7918189 chr19:7918195 synonymous SNV . 0 27 hm5C_associated_SNPs_17375 0 0 0 0 2 EVI5L chr19:7918219 5'GT 7918219 Upstream 25bp
chr6 133783605 133783605 1 + G T BRCA 133783602 + 133783582 133783622 41 CAGACAGGACAGCCCTACAGCTTGCCCACTTACGGTATTTC CAGACAGGACAGCCCTACAGCTTTCCCACTTACGGTATTTC < 41bp 1 0.0182415150976212 1 0.041400134563446 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133783602 chr6:133783605 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_17378 0 0 0 0 1 EYA4 chr6:133783615 5'GT 133783615 Upstream 11bp
chr11 61631214 61631214 1 + C G BRCA 61631203 + 61631183 61631223 41 CAGCCACCTGCAACGTGGAGCAGTCCTTCTTCAACGACTGG CAGCCACCTGCAACGTGGAGCAGTCCTTCTTGAACGACTGG < 41bp 1 0.0320088902066517 1 0.392595916986465 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61631203 chr11:61631214 nonsynonymous SNV 0.997 2 32 hm5C_associated_SNPs_17379 0 0 1 0 2 FADS2 chr11:61631179 3'AG 61631179 Downstream 36bp
chr11 61631214 61631214 1 + C G BRCA 61631203 + 61631183 61631223 41 CAGCCACCTGCAACGTGGAGCAGTCCTTCTTCAACGACTGG CAGCCACCTGCAACGTGGAGCAGTCCTTCTTGAACGACTGG < 41bp 1 0.0320088902066517 1 0.392595916986465 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61631203 chr11:61631214 nonsynonymous SNV 0.997 2 32 hm5C_associated_SNPs_17379 0 0 1 0 2 FADS2 chr11:61631258 5'GT 61631258 Upstream 45bp
chr8 21957342 21957342 1 + G A BRCA 21957337 + 21957317 21957357 41 CACAGACCGGCAGCCTGAAGCCCCCGGGGACAACCCCCACA CACAGACCGGCAGCCTGAAGCCCCCAGGGACAACCCCCACA < 41bp 1 0.225289452207969 1 0.0991723239421844 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21957337 chr8:21957342 nonsynonymous SNV 0.001 0 26 hm5C_associated_SNPs_17380 0 0 1 0 1 FAM160B2 chr8:21957404 5'GT 21957404 Upstream 63bp
chr12 133158042 133158042 1 + T A BRCA 133158032 + 133158012 133158052 41 CTGCCCCCCCCAGGTGCCGCCCATCCTGCCTCCAACCCATT CTGCCCCCCCCAGGTGCCGCCCATCCTGCCACCAACCCATT < 41bp 1 0.0126781605764426 1 0.0515947043895721 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBRSL1 ENSG00000112787 CDS Human protein_coding chr12:133158032 chr12:133158042 nonsynonymous SNV 0.637 0 31 hm5C_associated_SNPs_17381 0 0 1 0 2 FBRSL1 chr12:133158025 3'AG 133158025 Downstream 18bp
chr12 133158042 133158042 1 + T A BRCA 133158032 + 133158012 133158052 41 CTGCCCCCCCCAGGTGCCGCCCATCCTGCCTCCAACCCATT CTGCCCCCCCCAGGTGCCGCCCATCCTGCCACCAACCCATT < 41bp 1 0.0126781605764426 1 0.0515947043895721 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBRSL1 ENSG00000112787 CDS Human protein_coding chr12:133158032 chr12:133158042 nonsynonymous SNV 0.637 0 31 hm5C_associated_SNPs_17381 0 0 1 0 2 FBRSL1 chr12:133158102 5'GT 133158102 Upstream 61bp
chr10 5937117 5937117 1 + G T BRCA 5937118 + 5937098 5937138 41 GAGATGCCAGAGGACGAGTGCCCACTTGCTGGTCTTCACAG GAGATGCCAGAGGACGAGTTCCCACTTGCTGGTCTTCACAG < 41bp 1 0.171705383101791 1 0.0814338326454163 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5937118 chr10:5937117 nonsynonymous SNV 0.020 0 20 hm5C_associated_SNPs_17382 0 0 1 0 2 FBXO18 chr10:5937019 3'AG 5937019 Downstream 99bp
chr10 5937117 5937117 1 + G T BRCA 5937118 + 5937098 5937138 41 GAGATGCCAGAGGACGAGTGCCCACTTGCTGGTCTTCACAG GAGATGCCAGAGGACGAGTTCCCACTTGCTGGTCTTCACAG < 41bp 1 0.171705383101791 1 0.0814338326454163 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5937118 chr10:5937117 nonsynonymous SNV 0.020 0 20 hm5C_associated_SNPs_17382 0 0 1 0 2 FBXO18 chr10:5937150 5'GT 5937150 Upstream 34bp
chr19 17887068 17887068 1 + C T BRCA 17887060 + 17887040 17887080 41 CCCACTTTGTCCACAGGGCACCATGAAACGCCATTCTTCAC CCCACTTTGTCCACAGGGCACCATGAAATGCCATTCTTCAC < 41bp 1 0.0609758623252691 1 0.0776755213737488 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17887060 chr19:17887068 nonsynonymous SNV 0.998 3 29 hm5C_associated_SNPs_17383 0 0 1 0 2 FCHO1 chr19:17887056 3'AG 17887056 Downstream 13bp
chr19 17887068 17887068 1 + C T BRCA 17887060 + 17887040 17887080 41 CCCACTTTGTCCACAGGGCACCATGAAACGCCATTCTTCAC CCCACTTTGTCCACAGGGCACCATGAAATGCCATTCTTCAC < 41bp 1 0.0609758623252691 1 0.0776755213737488 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17887060 chr19:17887068 nonsynonymous SNV 0.998 3 29 hm5C_associated_SNPs_17383 0 0 1 0 2 FCHO1 chr19:17887080 5'GT 17887080 Upstream 13bp
chrX 135291482 135291482 1 + C T BRCA 135291501 + 135291481 135291521 41 TCTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATC TTTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATC < 41bp 1 0.0726059769632559 1 0.182035952806473 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291501 chrX:135291482 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_17386 0 0 0 0 1 FHL1 chrX:135291402 3'AG 135291402 Downstream 81bp
chrX 135291482 135291482 1 + C T BRCA 135291502 + 135291482 135291522 41 CTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATCC TTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATCC < 41bp 1 0.196377616315938 1 0.0704095959663391 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291502 chrX:135291482 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_17387 0 0 0 0 1 FHL1 chrX:135291402 3'AG 135291402 Downstream 81bp
chr18 34326920 34326920 1 + C G BRCA 34326923 + 34326903 34326943 41 TTCAGGTTGACTTTGATCAACTTCAGGATAATTTATGTCAG TTCAGGTTGACTTTGATGAACTTCAGGATAATTTATGTCAG < 41bp 1 0.23736019098619 1 0.062152773141861 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34326923 chr18:34326920 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_17388 0 0 0 0 1 FHOD3 chr18:34326908 3'AG 34326908 Downstream 13bp
chr18 34289076 34289076 1 + A G BRCA 34289065 + 34289045 34289085 41 TTGTCTCCACCAGCAAGTGCCGGGGATCCTGAACCCGAATC TTGTCTCCACCAGCAAGTGCCGGGGATCCTGGACCCGAATC < 41bp 1 0.618708118915416 1 0.88675320148468 experiment 0.762583762169167 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34289065 chr18:34289076 nonsynonymous SNV 0.045 0 32 hm5C_associated_SNPs_17389 0 0 0 0 1 FHOD3 chr18:34289058 3'AG 34289058 Downstream 19bp
chr19 49469846 49469846 1 + G A BRCA 49469831 + 49469811 49469851 41 GTTTCTAATTTCTCCCTCTTCTCTCTCAGCTCTGTGACTTC GTTTCTAATTTCTCCCTCTTCTCTCTCAGCTCTGTAACTTC < 41bp 1 0.266686386629624 1 0.206251710653305 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469831 chr19:49469846 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_17390 0 0 1 1 1 FTL chr19:49469840 3'AG 49469840 Downstream 7bp
chr6 37447030 37447030 1 + C T BRCA 37447022 + 37447002 37447042 41 CCTCCCTGCAGACTCCATTGCCCCATTTCAGTAAGTAGCTC CCTCCCTGCAGACTCCATTGCCCCATTTTAGTAAGTAGCTC < 41bp 1 0.370540374297272 1 0.193838357925415 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37447022 chr6:37447030 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_17391 0 0 1 0 1 CMTR1 chr6:37447031 5'GT 37447031 Upstream 2bp
chr6 37447030 37447030 1 + C T BRCA 37447023 + 37447003 37447043 41 CTCCCTGCAGACTCCATTGCCCCATTTCAGTAAGTAGCTCT CTCCCTGCAGACTCCATTGCCCCATTTTAGTAAGTAGCTCT < 41bp 1 0.0967012212294702 1 0.361104786396027 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37447023 chr6:37447030 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_17392 0 0 1 0 1 CMTR1 chr6:37447031 5'GT 37447031 Upstream 2bp
chr5 153760044 153760044 1 + C G BRCA 153760024 + 153760004 153760044 41 TCAGACCGCATTGCTCGGAACCGCAAGACCATTGTGTGCCC TCAGACCGCATTGCTCGGAACCGCAAGACCATTGTGTGCCG < 41bp 1 0.394752567992711 1 0.144509553909302 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153760024 chr5:153760044 nonsynonymous SNV 0.970 4 41 hm5C_associated_SNPs_17394 0 0 0 0 1 GALNT10 chr5:153760008 3'AG 153760008 Downstream 37bp
chr1 230384985 230384985 1 + G A BRCA 230384969 + 230384949 230384989 41 ATTCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCC ATTCAAGTGGGATTACATGACGCCTGAGCAGAGAAGATCCC < 41bp 1 0.488722458264929 1 0.152366876602173 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384969 chr1:230384985 synonymous SNV . 0 37 hm5C_associated_SNPs_17396 0 0 1 0 2 GALNT2 chr1:230384930 3'AG 230384930 Downstream 56bp
chr1 230384985 230384985 1 + G A BRCA 230384969 + 230384949 230384989 41 ATTCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCC ATTCAAGTGGGATTACATGACGCCTGAGCAGAGAAGATCCC < 41bp 1 0.488722458264929 1 0.152366876602173 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384969 chr1:230384985 synonymous SNV . 0 37 hm5C_associated_SNPs_17396 0 0 1 0 2 GALNT2 chr1:230385017 5'GT 230385017 Upstream 33bp
chr1 230384985 230384985 1 + G A BRCA 230384971 + 230384951 230384991 41 TCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCCGG TCAAGTGGGATTACATGACGCCTGAGCAGAGAAGATCCCGG < 41bp 1 0.254663507110011 1 0.087754875421524 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384971 chr1:230384985 synonymous SNV . 0 35 hm5C_associated_SNPs_17397 0 0 1 0 2 GALNT2 chr1:230384930 3'AG 230384930 Downstream 56bp
chr1 230384985 230384985 1 + G A BRCA 230384971 + 230384951 230384991 41 TCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCCGG TCAAGTGGGATTACATGACGCCTGAGCAGAGAAGATCCCGG < 41bp 1 0.254663507110011 1 0.087754875421524 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384971 chr1:230384985 synonymous SNV . 0 35 hm5C_associated_SNPs_17397 0 0 1 0 2 GALNT2 chr1:230385017 5'GT 230385017 Upstream 33bp
chr19 13002750 13002750 1 + G C BRCA 13002759 + 13002739 13002779 41 CTGCCAGGAGAGACTCATGCCTCGCATCCTGTTGGCCAATC CTGCCAGGAGACACTCATGCCTCGCATCCTGTTGGCCAATC < 41bp 1 0.598760461342631 1 0.273668467998505 experiment 0.802479077314738 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13002759 chr19:13002750 nonsynonymous SNV 0.861 3 12 hm5C_associated_SNPs_17398 0 0 1 0 1 GCDH chr19:13002788 5'GT 13002788 Upstream 39bp
chr2 171807955 171807955 1 + G A BRCA 171807938 + 171807918 171807958 41 CTGTCGAGAAGTGATTATTACACCAAATTCTGCATGGGGTG CTGTCGAGAAGTGATTATTACACCAAATTCTGCATGGAGTG < 41bp 1 0.762470194308043 1 0.476859927177429 experiment 0.475059611383915 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171807938 chr2:171807955 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_17399 0 0 1 0 1 GORASP2 chr2:171807968 5'GT 171807968 Upstream 14bp
chr2 157407221 157407221 1 + A G BRCA 157407233 + 157407213 157407253 41 GCCAGCCAAGTGCTGGTGTCCATATTGTGATGCCTGGTTAT GCCAGCCAGGTGCTGGTGTCCATATTGTGATGCCTGGTTAT < 41bp 1 0.209906593310228 1 0.269917488098145 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407233 chr2:157407221 nonsynonymous SNV 0.507 2 9 hm5C_associated_SNPs_17400 0 0 1 1 1 GPD2 chr2:157407258 5'GT 157407258 Upstream 38bp
chr12 131488811 131488811 1 + C T BRCA 131488791 + 131488771 131488811 41 CTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCC CTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCT < 41bp 1 0.0410808586444623 1 0.0414693653583527 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488791 chr12:131488811 stopgain 0.001 0 41 hm5C_associated_SNPs_17401 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 31bp
chr12 131488811 131488811 1 + C T BRCA 131488792 + 131488772 131488812 41 TCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCA TCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCTA < 41bp 1 0.229981452417687 1 0.245903998613358 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488792 chr12:131488811 stopgain 0.001 0 40 hm5C_associated_SNPs_17402 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 31bp
chr12 131488811 131488811 1 + C T BRCA 131488793 + 131488773 131488813 41 CCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAG CCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCTAG < 41bp 1 0.63732259699283 1 0.501971244812012 experiment 0.725354806014341 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488793 chr12:131488811 stopgain 0.001 0 39 hm5C_associated_SNPs_17403 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 31bp
chr12 131488811 131488811 1 + C T BRCA 131488795 + 131488775 131488815 41 CATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAGAT CATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCTAGAT < 41bp 1 0.472205901655178 1 0.888536214828491 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488795 chr12:131488811 stopgain 0.001 0 37 hm5C_associated_SNPs_17404 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 31bp
chr12 131488811 131488811 1 + C T BRCA 131488799 + 131488779 131488819 41 ACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAGATCCCC ACCGCTTCCCGGCCCACGGGCAGAGCTTCATCTAGATCCCC < 41bp 1 0.332222968268337 1 0.315529435873032 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488799 chr12:131488811 stopgain 0.001 0 33 hm5C_associated_SNPs_17405 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 31bp
chr16 46960909 46960909 1 + G A BRCA 46960906 + 46960886 46960926 41 AGACTGGCATCTGTGTCGTGCCCGGCAGTGGCTTTGGGCAG AGACTGGCATCTGTGTCGTGCCCAGCAGTGGCTTTGGGCAG < 41bp 1 0.156044305356062 1 0.0632664561271667 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPT2 ENSG00000166123 CDS Human protein_coding chr16:46960906 chr16:46960909 nonsynonymous SNV 0.962 4 24 hm5C_associated_SNPs_17406 0 0 1 0 2 GPT2 chr16:46960837 3'AG 46960837 Downstream 73bp
chr16 46960909 46960909 1 + G A BRCA 46960906 + 46960886 46960926 41 AGACTGGCATCTGTGTCGTGCCCGGCAGTGGCTTTGGGCAG AGACTGGCATCTGTGTCGTGCCCAGCAGTGGCTTTGGGCAG < 41bp 1 0.156044305356062 1 0.0632664561271667 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPT2 ENSG00000166123 CDS Human protein_coding chr16:46960906 chr16:46960909 nonsynonymous SNV 0.962 4 24 hm5C_associated_SNPs_17406 0 0 1 0 2 GPT2 chr16:46960949 5'GT 46960949 Upstream 41bp
chr9 124062270 124062270 1 + T G BRCA 124062255 + 124062235 124062275 41 GGGGGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCG GGGGGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGGGCCCG < 41bp 1 0.510182453559563 1 0.659279465675354 experiment 0.979635092880874 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062255 chr9:124062270 nonsynonymous SNV 0.394 1 36 hm5C_associated_SNPs_17407 0 0 1 0 1 GSN chr9:124062283 5'GT 124062283 Upstream 14bp
chr9 124062270 124062270 1 + T G BRCA 124062257 + 124062237 124062277 41 GGGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCGAG GGGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGGGCCCGAG < 41bp 1 0.677966509979151 1 0.726703763008118 experiment 0.644066980041698 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062257 chr9:124062270 nonsynonymous SNV 0.394 1 34 hm5C_associated_SNPs_17408 0 0 1 0 1 GSN chr9:124062283 5'GT 124062283 Upstream 14bp
chr9 124062270 124062270 1 + T G BRCA 124062258 + 124062238 124062278 41 GGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCGAGG GGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGGGCCCGAGG < 41bp 1 0.48359623231842 1 0.85528039932251 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062258 chr9:124062270 nonsynonymous SNV 0.394 1 33 hm5C_associated_SNPs_17409 0 0 1 0 1 GSN chr9:124062283 5'GT 124062283 Upstream 14bp
chr10 106014943 106014943 1 + C T BRCA 106014932 + 106014912 106014952 41 CCCCGGCAGGAAGCGCGCCCCCGGGGCCGGTCCCGGAGGGC CCCCGGCAGGAAGCGCGCCCCCGGGGCCGGTTCCGGAGGGC < 41bp 1 0.781169620288282 1 0.841288864612579 experiment 0.437660759423437 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GSTO1 ENSG00000148834 CDS Human protein_coding chr10:106014932 chr10:106014943 synonymous SNV . 0 32 hm5C_associated_SNPs_17410 0 0 1 0 2 GSTO1 chr10:106014921 3'AG 106014921 Downstream 23bp
chr10 106014943 106014943 1 + C T BRCA 106014932 + 106014912 106014952 41 CCCCGGCAGGAAGCGCGCCCCCGGGGCCGGTCCCGGAGGGC CCCCGGCAGGAAGCGCGCCCCCGGGGCCGGTTCCGGAGGGC < 41bp 1 0.781169620288282 1 0.841288864612579 experiment 0.437660759423437 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GSTO1 ENSG00000148834 CDS Human protein_coding chr10:106014932 chr10:106014943 synonymous SNV . 0 32 hm5C_associated_SNPs_17410 0 0 1 0 2 GSTO1 chr10:106015029 5'GT 106015029 Upstream 87bp
chr12 124144425 124144425 1 + C T BRCA 124144415 + 124144395 124144435 41 AGTTCATGTTGACTACAGGGCTGCTTGCTTCTGTCATCGAA AGTTCATGTTGACTACAGGGCTGCTTGCTTTTGTCATCGAA < 41bp 1 0.330876751571399 1 0.0540709793567657 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2H3 ENSG00000111358 CDS Human protein_coding chr12:124144415 chr12:124144425 synonymous SNV . 0 31 hm5C_associated_SNPs_17411 0 0 1 0 2 GTF2H3 chr12:124144342 3'AG 124144342 Downstream 84bp
chr12 124144425 124144425 1 + C T BRCA 124144415 + 124144395 124144435 41 AGTTCATGTTGACTACAGGGCTGCTTGCTTCTGTCATCGAA AGTTCATGTTGACTACAGGGCTGCTTGCTTTTGTCATCGAA < 41bp 1 0.330876751571399 1 0.0540709793567657 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2H3 ENSG00000111358 CDS Human protein_coding chr12:124144415 chr12:124144425 synonymous SNV . 0 31 hm5C_associated_SNPs_17411 0 0 1 0 2 GTF2H3 chr12:124144477 5'GT 124144477 Upstream 53bp
chr19 36104782 36104782 1 + G C BRCA 36104795 + 36104775 36104815 41 TCAAGAAGATCCGGGGAAACCTACTCTGGTAACTGCTTCTT TCAAGAACATCCGGGGAAACCTACTCTGGTAACTGCTTCTT < 41bp 1 0.452931334364951 1 0.103859066963196 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HAUS5 ENSG00000249115 CDS Human protein_coding chr19:36104795 chr19:36104782 nonsynonymous SNV 0.992 1 8 hm5C_associated_SNPs_17413 0 0 1 0 2 HAUS5 chr19:36104770 3'AG 36104770 Downstream 13bp
chr19 36104782 36104782 1 + G C BRCA 36104795 + 36104775 36104815 41 TCAAGAAGATCCGGGGAAACCTACTCTGGTAACTGCTTCTT TCAAGAACATCCGGGGAAACCTACTCTGGTAACTGCTTCTT < 41bp 1 0.452931334364951 1 0.103859066963196 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HAUS5 ENSG00000249115 CDS Human protein_coding chr19:36104795 chr19:36104782 nonsynonymous SNV 0.992 1 8 hm5C_associated_SNPs_17413 0 0 1 0 2 HAUS5 chr19:36104802 5'GT 36104802 Upstream 21bp
chr7 43506115 43506115 1 + C T BRCA 43506109 + 43506089 43506129 41 AATCACCTTGCTGCTGCAGTCCCCAGCGGTCAAGTTCATCA AATCACCTTGCTGCTGCAGTCCCCAGTGGTCAAGTTCATCA < 41bp 1 0.409355530465144 1 0.0841705501079559 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HECW1 ENSG00000002746 CDS Human protein_coding chr7:43506109 chr7:43506115 nonsynonymous SNV 0.999 5 27 hm5C_associated_SNPs_17414 0 0 0 0 2 HECW1 chr7:43506046 3'AG 43506046 Downstream 70bp
chr7 43506115 43506115 1 + C T BRCA 43506109 + 43506089 43506129 41 AATCACCTTGCTGCTGCAGTCCCCAGCGGTCAAGTTCATCA AATCACCTTGCTGCTGCAGTCCCCAGTGGTCAAGTTCATCA < 41bp 1 0.409355530465144 1 0.0841705501079559 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HECW1 ENSG00000002746 CDS Human protein_coding chr7:43506109 chr7:43506115 nonsynonymous SNV 0.999 5 27 hm5C_associated_SNPs_17414 0 0 0 0 2 HECW1 chr7:43506167 5'GT 43506167 Upstream 53bp
chr6 29911296 29911296 1 + G A BRCA 29911277 + 29911257 29911297 41 GGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGG GGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACAG < 41bp 1 0.577290581541027 1 0.21406289935112 experiment 0.845418836917946 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911277 chr6:29911296 nonsynonymous SNV 0.032 3 40 hm5C_associated_SNPs_17419 0 0 1 0 1 HLA-A chr6:29911320 5'GT 29911320 Upstream 25bp
chr6 29911296 29911296 1 + G A BRCA 29911278 + 29911258 29911298 41 GCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGG GCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACAGG < 41bp 1 0.41097082081026 1 0.415480196475983 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911278 chr6:29911296 nonsynonymous SNV 0.032 3 39 hm5C_associated_SNPs_17420 0 0 1 0 1 HLA-A chr6:29911320 5'GT 29911320 Upstream 25bp
chrX 150156319 150156319 1 + A T BRCA 150156311 + 150156291 150156331 41 AAAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGG AAAGGGTCCTGCTAAAGTTGCCCGGAAATAGGTGGAAGAGG < 41bp 1 0.476275197858491 1 0.0978497862815857 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156311 chrX:150156319 stopgain 0.998 0 29 hm5C_associated_SNPs_17421 0 0 1 0 1 HMGB3 chrX:150156250 3'AG 150156250 Downstream 70bp
chrX 150156319 150156319 1 + A T BRCA 150156312 + 150156292 150156332 41 AAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGA AAGGGTCCTGCTAAAGTTGCCCGGAAATAGGTGGAAGAGGA < 41bp 1 0.642378466130349 1 0.618760645389557 experiment 0.715243067739302 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156312 chrX:150156319 stopgain 0.998 0 28 hm5C_associated_SNPs_17422 0 0 1 0 1 HMGB3 chrX:150156250 3'AG 150156250 Downstream 70bp
chrX 150156319 150156319 1 + A T BRCA 150156313 + 150156293 150156333 41 AGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGAA AGGGTCCTGCTAAAGTTGCCCGGAAATAGGTGGAAGAGGAA < 41bp 1 0.694855691877095 1 0.746848821640015 experiment 0.61028861624581 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156313 chrX:150156319 stopgain 0.998 0 27 hm5C_associated_SNPs_17423 0 0 1 0 1 HMGB3 chrX:150156250 3'AG 150156250 Downstream 70bp
chr1 26799995 26799995 1 + G A BRCA 26799987 + 26799967 26800007 41 CTTATAGGCTGAAGGGGATGCTAAGGGAGATAAAGCAAAGG CTTATAGGCTGAAGGGGATGCTAAGGGAAATAAAGCAAAGG < 41bp 1 0.437239956391955 1 0.201743572950363 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN2 ENSG00000198830 CDS Human protein_coding chr1:26799987 chr1:26799995 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_17424 0 0 1 0 2 HMGN2 chr1:26799974 3'AG 26799974 Downstream 22bp
chr1 26799995 26799995 1 + G A BRCA 26799987 + 26799967 26800007 41 CTTATAGGCTGAAGGGGATGCTAAGGGAGATAAAGCAAAGG CTTATAGGCTGAAGGGGATGCTAAGGGAAATAAAGCAAAGG < 41bp 1 0.437239956391955 1 0.201743572950363 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN2 ENSG00000198830 CDS Human protein_coding chr1:26799987 chr1:26799995 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_17424 0 0 1 0 2 HMGN2 chr1:26800018 5'GT 26800018 Upstream 24bp
chr1 26799995 26799995 1 + G A BRCA 26800015 + 26799995 26800035 41 GATAAAGCAAAGGTGAAGGACGAAGTAAGTCATTCTCTCTT AATAAAGCAAAGGTGAAGGACGAAGTAAGTCATTCTCTCTT < 41bp 1 0.553241570004637 1 0.239886492490768 experiment 0.893516859990726 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN2 ENSG00000198830 CDS Human protein_coding chr1:26800015 chr1:26799995 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_17425 0 0 1 0 2 HMGN2 chr1:26799974 3'AG 26799974 Downstream 22bp
chr1 26799995 26799995 1 + G A BRCA 26800015 + 26799995 26800035 41 GATAAAGCAAAGGTGAAGGACGAAGTAAGTCATTCTCTCTT AATAAAGCAAAGGTGAAGGACGAAGTAAGTCATTCTCTCTT < 41bp 1 0.553241570004637 1 0.239886492490768 experiment 0.893516859990726 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN2 ENSG00000198830 CDS Human protein_coding chr1:26800015 chr1:26799995 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_17425 0 0 1 0 2 HMGN2 chr1:26800018 5'GT 26800018 Upstream 24bp
chr19 41811663 41811663 1 + C A BRCA 41811651 + 41811631 41811671 41 CACAGCCCCACCGCCTCCACCTCCACCACCACCTGCCTACA CACAGCCCCACCGCCTCCACCTCCACCACCACATGCCTACA < 41bp 1 0.596526180412339 1 0.944892525672913 experiment 0.806947639175322 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41811651 chr19:41811663 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_17427 0 0 1 0 1 HNRNPUL1 chr19:41811581 3'AG 41811581 Downstream 83bp
chr6 44218045 44218045 1 + G A BRCA 44218040 + 44218020 44218060 41 TTACTTAGTTGGAGAAGGAACGAGAGAAGGAAATTAGTGAT TTACTTAGTTGGAGAAGGAACGAGAAAAGGAAATTAGTGAT < 41bp 1 0.788210522311748 1 0.519022345542908 experiment 0.423578955376505 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44218040 chr6:44218045 synonymous SNV . 0 26 hm5C_associated_SNPs_17428 0 0 1 0 1 HSP90AB1 chr6:44218028 3'AG 44218028 Downstream 18bp
chr14 65007620 65007620 1 + G A BRCA 65007630 + 65007610 65007650 41 ACCTATTCGTGCGTCGGGGTCTTCCAACATGGCAAGGTGGA ACCTATTCGTACGTCGGGGTCTTCCAACATGGCAAGGTGGA < 41bp 1 0.130898743926351 1 0.0403059720993042 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSPA2 ENSG00000126803 CDS Human protein_coding chr14:65007630 chr14:65007620 nonsynonymous SNV 0.964 3 11 hm5C_associated_SNPs_17429 0 0 0 0 1 HSPA2 chr14:65007563 3'AG 65007563 Downstream 58bp
chr14 65007625 65007625 1 + G T BRCA 65007630 + 65007610 65007650 41 ACCTATTCGTGCGTCGGGGTCTTCCAACATGGCAAGGTGGA ACCTATTCGTGCGTCTGGGTCTTCCAACATGGCAAGGTGGA < 41bp 1 0.135314327943126 1 0.0899165868759155 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSPA2 ENSG00000126803 CDS Human protein_coding chr14:65007630 chr14:65007625 nonsynonymous SNV 0.956 3 16 hm5C_associated_SNPs_17430 0 0 0 0 1 HSPA2 chr14:65007563 3'AG 65007563 Downstream 63bp
chr4 8294069 8294069 1 + C T BRCA 8294067 + 8294047 8294087 41 GTACGGGAACTCCGGGGGACCACTGGTGAACCTGGTAAGTG GTACGGGAACTCCGGGGGACCATTGGTGAACCTGGTAAGTG < 41bp 1 0.177285280154609 1 0.15670308470726 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8294067 chr4:8294069 synonymous SNV . 0 23 hm5C_associated_SNPs_17432 0 0 0 0 2 HTRA3 chr4:8294048 3'AG 8294048 Downstream 22bp
chr4 8294069 8294069 1 + C T BRCA 8294067 + 8294047 8294087 41 GTACGGGAACTCCGGGGGACCACTGGTGAACCTGGTAAGTG GTACGGGAACTCCGGGGGACCATTGGTGAACCTGGTAAGTG < 41bp 1 0.177285280154609 1 0.15670308470726 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8294067 chr4:8294069 synonymous SNV . 0 23 hm5C_associated_SNPs_17432 0 0 0 0 2 HTRA3 chr4:8294080 5'GT 8294080 Upstream 12bp
chr4 3224137 3224137 1 + G A BRCA 3224157 + 3224137 3224177 41 GAAGAAACTTGGGCCACCCTCCTTGGTGTCCTGGTGACGCA AAAGAAACTTGGGCCACCCTCCTTGGTGTCCTGGTGACGCA < 41bp 1 0.067389694649575 1 0.453809022903442 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3224157 chr4:3224137 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_17433 0 0 1 0 2 HTT chr4:3224114 3'AG 3224114 Downstream 24bp
chr4 3224137 3224137 1 + G A BRCA 3224157 + 3224137 3224177 41 GAAGAAACTTGGGCCACCCTCCTTGGTGTCCTGGTGACGCA AAAGAAACTTGGGCCACCCTCCTTGGTGTCCTGGTGACGCA < 41bp 1 0.067389694649575 1 0.453809022903442 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3224157 chr4:3224137 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_17433 0 0 1 0 2 HTT chr4:3224214 5'GT 3224214 Upstream 78bp
chr17 73745040 73745040 1 + G A BRCA 73745021 + 73745001 73745041 41 TGCAAGAAGTTGACTCCCTCCTGCGGGGCCGCCAGGTCCGC TGCAAGAAGTTGACTCCCTCCTGCGGGGCCGCCAGGTCCAC < 41bp 1 0.626265041433188 1 0.902369737625122 experiment 0.747469917133624 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73745021 chr17:73745040 nonsynonymous SNV 0.825 3 40 hm5C_associated_SNPs_17434 0 0 0 0 1 ITGB4 chr17:73745126 5'GT 73745126 Upstream 87bp
chr3 4774890 4774890 1 + A G BRCA 4774884 + 4774864 4774904 41 CCCACTGTCAGCAGGAGGACCCGGCAAGCCCGGGGGAGGAG CCCACTGTCAGCAGGAGGACCCGGCAGGCCCGGGGGAGGAG < 41bp 1 0.131584802821354 1 0.422132074832916 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4774884 chr3:4774890 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_17435 0 0 1 0 1 ITPR1 chr3:4774904 5'GT 4774904 Upstream 15bp
chr1 215785242 215785242 1 + G C BRCA 215785244 + 215785224 215785264 41 CCAACAAACTATTTGTAAGACTCTCATCGACTGGAAAAAGG CCAACAAACTATTTGTAACACTCTCATCGACTGGAAAAAGG < 41bp 1 0.128692223493742 1 0.0511167049407959 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215785244 chr1:215785242 nonsynonymous SNV 0.998 4 19 hm5C_associated_SNPs_17437 0 0 1 0 2 KCTD3 chr1:215785167 3'AG 215785167 Downstream 76bp
chr1 215785242 215785242 1 + G C BRCA 215785244 + 215785224 215785264 41 CCAACAAACTATTTGTAAGACTCTCATCGACTGGAAAAAGG CCAACAAACTATTTGTAACACTCTCATCGACTGGAAAAAGG < 41bp 1 0.128692223493742 1 0.0511167049407959 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215785244 chr1:215785242 nonsynonymous SNV 0.998 4 19 hm5C_associated_SNPs_17437 0 0 1 0 2 KCTD3 chr1:215785263 5'GT 215785263 Upstream 22bp
chr17 7750214 7750214 1 + A C BRCA 7750209 + 7750189 7750229 41 CACCACCACCACCACCACCACCACCACCCCTGCCTGGCCTG CACCACCACCACCACCACCACCACCCCCCCTGCCTGGCCTG < 41bp 1 0.0295644611161399 1 0.301009237766266 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7750209 chr17:7750214 synonymous SNV . 0 26 hm5C_associated_SNPs_17438 0 0 1 0 1 KDM6B chr17:7750137 3'AG 7750137 Downstream 78bp
chr17 7750214 7750214 1 + A C BRCA 7750213 + 7750193 7750233 41 ACCACCACCACCACCACCACCACCCCTGCCTGGCCTGGCTA ACCACCACCACCACCACCACCCCCCCTGCCTGGCCTGGCTA < 41bp 1 0.0402060830634114 1 0.341668754816055 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7750213 chr17:7750214 synonymous SNV . 0 22 hm5C_associated_SNPs_17439 0 0 1 0 1 KDM6B chr17:7750137 3'AG 7750137 Downstream 78bp
chr17 73486391 73486391 1 + G T BRCA 73486373 + 73486353 73486393 41 AGTCCTCTGGGTTCTGGCAACTGCCTGTGGAGAGGCCCGTG AGTCCTCTGGGTTCTGGCAACTGCCTGTGGAGAGGCCCTTG < 41bp 1 0.452969301389189 1 0.095396876335144 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73486373 chr17:73486391 nonsynonymous SNV 0.996 2 39 hm5C_associated_SNPs_17440 0 0 1 0 2 TMEM94 chr17:73486315 3'AG 73486315 Downstream 77bp
chr17 73486391 73486391 1 + G T BRCA 73486373 + 73486353 73486393 41 AGTCCTCTGGGTTCTGGCAACTGCCTGTGGAGAGGCCCGTG AGTCCTCTGGGTTCTGGCAACTGCCTGTGGAGAGGCCCTTG < 41bp 1 0.452969301389189 1 0.095396876335144 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73486373 chr17:73486391 nonsynonymous SNV 0.996 2 39 hm5C_associated_SNPs_17440 0 0 1 0 2 TMEM94 chr17:73486431 5'GT 73486431 Upstream 41bp
chr19 7682695 7682695 1 + C T BRCA 7682691 + 7682671 7682711 41 ATCCTCTTTCGCGACTCGAGCTGCCAGTTCCGGGCGCTCTA ATCCTCTTTCGCGACTCGAGCTGCTAGTTCCGGGCGCTCTA < 41bp 1 0.306264446630311 1 0.0687890648841858 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7682691 chr19:7682695 stopgain 1.000 1 25 hm5C_associated_SNPs_17445 0 0 0 0 1 CAMSAP3 chr19:7682638 3'AG 7682638 Downstream 58bp
chr1 10332316 10332316 1 + T C BRCA 10332306 + 10332286 10332326 41 GTATTTATTTTAGGAAGGAGCAAATATTAATAAGTCTCTTA GTATTTATTTTAGGAAGGAGCAAATATTAACAAGTCTCTTA < 41bp 1 0.0472626342761648 1 0.186384111642838 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10332306 chr1:10332316 synonymous SNV . 0 31 hm5C_associated_SNPs_17446 0 0 1 1 2 KIF1B chr1:10332299 3'AG 10332299 Downstream 18bp
chr1 10332316 10332316 1 + T C BRCA 10332306 + 10332286 10332326 41 GTATTTATTTTAGGAAGGAGCAAATATTAATAAGTCTCTTA GTATTTATTTTAGGAAGGAGCAAATATTAACAAGTCTCTTA < 41bp 1 0.0472626342761648 1 0.186384111642838 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10332306 chr1:10332316 synonymous SNV . 0 31 hm5C_associated_SNPs_17446 0 0 1 1 2 KIF1B chr1:10332364 5'GT 10332364 Upstream 49bp
chr1 10412697 10412697 1 + C T BRCA 10412691 + 10412671 10412711 41 TTTTATCCTTTCTTTTAGGTCGTATTCGGAATAAGCCTGAG TTTTATCCTTTCTTTTAGGTCGTATTTGGAATAAGCCTGAG < 41bp 1 0.0709441734643508 1 0.109027504920959 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10412691 chr1:10412697 nonsynonymous SNV 0.994 4 27 hm5C_associated_SNPs_17447 0 0 1 0 2 KIF1B chr1:10412689 3'AG 10412689 Downstream 9bp
chr1 10412697 10412697 1 + C T BRCA 10412691 + 10412671 10412711 41 TTTTATCCTTTCTTTTAGGTCGTATTCGGAATAAGCCTGAG TTTTATCCTTTCTTTTAGGTCGTATTTGGAATAAGCCTGAG < 41bp 1 0.0709441734643508 1 0.109027504920959 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10412691 chr1:10412697 nonsynonymous SNV 0.994 4 27 hm5C_associated_SNPs_17447 0 0 1 0 2 KIF1B chr1:10412794 5'GT 10412794 Upstream 98bp
chrX 69639610 69639610 1 + G A BRCA 69639607 + 69639587 69639627 41 CAGGATTGAGCTTCTTTAATCCCGTCTGTGCCACCCCCAAT CAGGATTGAGCTTCTTTAATCCCATCTGTGCCACCCCCAAT < 41bp 1 0.203813442229292 1 0.0965136587619781 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639607 chrX:69639610 nonsynonymous SNV 0.910 0 24 hm5C_associated_SNPs_17448 0 0 1 0 2 KIF4A chrX:69639511 3'AG 69639511 Downstream 100bp
chrX 69639610 69639610 1 + G A BRCA 69639607 + 69639587 69639627 41 CAGGATTGAGCTTCTTTAATCCCGTCTGTGCCACCCCCAAT CAGGATTGAGCTTCTTTAATCCCATCTGTGCCACCCCCAAT < 41bp 1 0.203813442229292 1 0.0965136587619781 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639607 chrX:69639610 nonsynonymous SNV 0.910 0 24 hm5C_associated_SNPs_17448 0 0 1 0 2 KIF4A chrX:69639633 5'GT 69639633 Upstream 24bp
chrX 69639547 69639547 1 + G A BRCA 69639552 + 69639532 69639572 41 CGGACCCAGGATTCCGAAGGCTCCTTCAAACTGGAGGATCC CGGACCCAGGATTCCAAAGGCTCCTTCAAACTGGAGGATCC < 41bp 1 0.317761044762542 1 0.330311328172684 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639552 chrX:69639547 nonsynonymous SNV 0.994 1 16 hm5C_associated_SNPs_17449 0 0 0 0 2 KIF4A chrX:69639511 3'AG 69639511 Downstream 37bp
chrX 69639547 69639547 1 + G A BRCA 69639552 + 69639532 69639572 41 CGGACCCAGGATTCCGAAGGCTCCTTCAAACTGGAGGATCC CGGACCCAGGATTCCAAAGGCTCCTTCAAACTGGAGGATCC < 41bp 1 0.317761044762542 1 0.330311328172684 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639552 chrX:69639547 nonsynonymous SNV 0.994 1 16 hm5C_associated_SNPs_17449 0 0 0 0 2 KIF4A chrX:69639633 5'GT 69639633 Upstream 87bp
chr6 42986630 42986630 1 + A C BRCA 42986648 + 42986628 42986668 41 CGAAGGGGAAGGGGCCATGTCCCCGCCGGCGCCAGTGCTGC CGCAGGGGAAGGGGCCATGTCCCCGCCGGCGCCAGTGCTGC < 41bp 1 0.515698537302999 1 0.6257603764534 experiment 0.968602925394001 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLHDC3 ENSG00000124702 CDS Human protein_coding chr6:42986648 chr6:42986630 nonsynonymous SNV 0.999 1 3 hm5C_associated_SNPs_17450 0 0 1 0 1 KLHDC3 chr6:42986709 5'GT 42986709 Upstream 80bp
chr17 66033483 66033483 1 + C T BRCA 66033486 + 66033466 66033506 41 TTCTCAAGGAAATGAGGCGTCGCAGAATAGAGGTCAATGTG TTCTCAAGGAAATGAGGTGTCGCAGAATAGAGGTCAATGTG < 41bp 1 0.770419376032383 1 0.239000648260117 experiment 0.459161247935233 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033486 chr17:66033483 nonsynonymous SNV 0.074 3 18 hm5C_associated_SNPs_17451 0 0 1 0 1 KPNA2 chr17:66033474 3'AG 66033474 Downstream 10bp
chr17 66033483 66033483 1 + C T BRCA 66033488 + 66033468 66033508 41 CTCAAGGAAATGAGGCGTCGCAGAATAGAGGTCAATGTGGA CTCAAGGAAATGAGGTGTCGCAGAATAGAGGTCAATGTGGA < 41bp 1 0.741510343504531 1 0.761599063873291 experiment 0.516979312990939 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033488 chr17:66033483 nonsynonymous SNV 0.074 3 16 hm5C_associated_SNPs_17452 0 0 1 0 1 KPNA2 chr17:66033474 3'AG 66033474 Downstream 10bp
chr12 52631316 52631316 1 + G A BRCA 52631311 + 52631291 52631331 41 AGGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAA AGGTACGAAGATGAAATTAACCACCACACAGCTGCTGAGAA < 41bp 1 0.0719156459633295 1 0.0420572459697723 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631311 chr12:52631316 nonsynonymous SNV 0.182 3 26 hm5C_associated_SNPs_17454 0 0 0 0 2 KRT7 chr12:52631293 3'AG 52631293 Downstream 24bp
chr12 52631316 52631316 1 + G A BRCA 52631311 + 52631291 52631331 41 AGGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAA AGGTACGAAGATGAAATTAACCACCACACAGCTGCTGAGAA < 41bp 1 0.0719156459633295 1 0.0420572459697723 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631311 chr12:52631316 nonsynonymous SNV 0.182 3 26 hm5C_associated_SNPs_17454 0 0 0 0 2 KRT7 chr12:52631353 5'GT 52631353 Upstream 38bp
chr12 52631316 52631316 1 + G A BRCA 52631312 + 52631292 52631332 41 GGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAAT GGTACGAAGATGAAATTAACCACCACACAGCTGCTGAGAAT < 41bp 1 0.760353813707622 1 0.431760489940643 experiment 0.479292372584756 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631312 chr12:52631316 nonsynonymous SNV 0.182 3 25 hm5C_associated_SNPs_17455 0 0 0 0 2 KRT7 chr12:52631293 3'AG 52631293 Downstream 24bp
chr12 52631316 52631316 1 + G A BRCA 52631312 + 52631292 52631332 41 GGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAAT GGTACGAAGATGAAATTAACCACCACACAGCTGCTGAGAAT < 41bp 1 0.760353813707622 1 0.431760489940643 experiment 0.479292372584756 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631312 chr12:52631316 nonsynonymous SNV 0.182 3 25 hm5C_associated_SNPs_17455 0 0 0 0 2 KRT7 chr12:52631353 5'GT 52631353 Upstream 38bp
chr12 52631316 52631316 1 + G A BRCA 52631314 + 52631294 52631334 41 TACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGA TACGAAGATGAAATTAACCACCACACAGCTGCTGAGAATGA < 41bp 1 0.144451404249852 1 0.0768254399299622 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631314 chr12:52631316 nonsynonymous SNV 0.182 3 23 hm5C_associated_SNPs_17456 0 0 0 0 2 KRT7 chr12:52631293 3'AG 52631293 Downstream 24bp
chr12 52631316 52631316 1 + G A BRCA 52631314 + 52631294 52631334 41 TACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGA TACGAAGATGAAATTAACCACCACACAGCTGCTGAGAATGA < 41bp 1 0.144451404249852 1 0.0768254399299622 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631314 chr12:52631316 nonsynonymous SNV 0.182 3 23 hm5C_associated_SNPs_17456 0 0 0 0 2 KRT7 chr12:52631353 5'GT 52631353 Upstream 38bp
chr12 52631316 52631316 1 + G A BRCA 52631315 + 52631295 52631335 41 ACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGAG ACGAAGATGAAATTAACCACCACACAGCTGCTGAGAATGAG < 41bp 1 0.119547796315359 1 0.0703204870223999 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631315 chr12:52631316 nonsynonymous SNV 0.182 3 22 hm5C_associated_SNPs_17457 0 0 0 0 2 KRT7 chr12:52631293 3'AG 52631293 Downstream 24bp
chr12 52631316 52631316 1 + G A BRCA 52631315 + 52631295 52631335 41 ACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGAG ACGAAGATGAAATTAACCACCACACAGCTGCTGAGAATGAG < 41bp 1 0.119547796315359 1 0.0703204870223999 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631315 chr12:52631316 nonsynonymous SNV 0.182 3 22 hm5C_associated_SNPs_17457 0 0 0 0 2 KRT7 chr12:52631353 5'GT 52631353 Upstream 38bp
chr12 52636898 52636898 1 + G C BRCA 52636909 + 52636889 52636929 41 CTGCAGGCTGAGATCGACAACATCAAGAACCAGGTGGGACA CTGCAGGCTCAGATCGACAACATCAAGAACCAGGTGGGACA < 41bp 1 0.34266245481721 1 0.0366370975971222 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636909 chr12:52636898 nonsynonymous SNV 0.977 3 10 hm5C_associated_SNPs_17458 0 0 1 0 1 KRT7 chr12:52636921 5'GT 52636921 Upstream 24bp
chr12 52636898 52636898 1 + G C BRCA 52636912 + 52636892 52636932 41 CAGGCTGAGATCGACAACATCAAGAACCAGGTGGGACAAGT CAGGCTCAGATCGACAACATCAAGAACCAGGTGGGACAAGT < 41bp 1 0.658685475419205 1 0.30838143825531 experiment 0.682629049161591 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636912 chr12:52636898 nonsynonymous SNV 0.977 3 7 hm5C_associated_SNPs_17459 0 0 1 0 1 KRT7 chr12:52636921 5'GT 52636921 Upstream 24bp
chr12 52636898 52636898 1 + G C BRCA 52636918 + 52636898 52636938 41 GAGATCGACAACATCAAGAACCAGGTGGGACAAGTCCTCCT CAGATCGACAACATCAAGAACCAGGTGGGACAAGTCCTCCT < 41bp 1 0.277635788227196 1 0.455006629228592 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636918 chr12:52636898 nonsynonymous SNV 0.977 3 1 hm5C_associated_SNPs_17460 0 0 1 0 1 KRT7 chr12:52636921 5'GT 52636921 Upstream 24bp
chr6 130381217 130381217 1 + G T BRCA 130381222 + 130381202 130381242 41 AAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGCGTGGA AAAAATGGATTCAAATTTGGCATGAAATTAGAAGGCGTGGA < 41bp 1 0.492256861268565 1 0.313899606466293 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130381222 chr6:130381217 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_17461 0 0 1 0 2 L3MBTL3 chr6:130381181 3'AG 130381181 Downstream 37bp
chr6 130381217 130381217 1 + G T BRCA 130381222 + 130381202 130381242 41 AAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGCGTGGA AAAAATGGATTCAAATTTGGCATGAAATTAGAAGGCGTGGA < 41bp 1 0.492256861268565 1 0.313899606466293 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130381222 chr6:130381217 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_17461 0 0 1 0 2 L3MBTL3 chr6:130381285 5'GT 130381285 Upstream 69bp
chr1 183094653 183094653 1 + C G BRCA 183094656 + 183094636 183094676 41 GCTTGTGACCCTGGATTCTACAATCTGCAGAGTGGGCAAGG GCTTGTGACCCTGGATTGTACAATCTGCAGAGTGGGCAAGG < 41bp 1 0.166891105479072 1 0.0543555617332458 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183094656 chr1:183094653 nonsynonymous SNV 0.973 2 18 hm5C_associated_SNPs_17462 0 0 1 0 1 LAMC1 chr1:183094685 5'GT 183094685 Upstream 33bp
chr7 5644991 5644991 1 + C T BRCA 5644976 + 5644956 5644996 41 GGCGACACTCCTGTGGACTTCTTCTTCGAGTTCTGCGACTA GGCGACACTCCTGTGGACTTCTTCTTCGAGTTCTGTGACTA < 41bp 1 0.206772892040934 1 0.100811064243317 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5644976 chr7:5644991 synonymous SNV . 0 36 hm5C_associated_SNPs_17465 0 0 1 0 1 FSCN1 chr7:5644903 3'AG 5644903 Downstream 89bp
chr3 66431242 66431242 1 - C T BRCA 66431223 - 66431203 66431243 41 TGGACTGTTACTCCAGGGGACAAGCCTTCCACCCCCAGCCT TAGACTGTTACTCCAGGGGACAAGCCTTCCACCCCCAGCCT < 41bp 1 0.199321661622229 1 0.139126569032669 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66431223 chr3:66431242 synonymous SNV . 0 2 hm5C_associated_SNPs_17466 0 0 1 0 1 LRIG1 chr3:66431285 3'AG 66431285 Downstream 44bp
chr12 57599437 57599437 1 + C T BRCA 57599419 + 57599399 57599439 41 CGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGACGC CGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGATGC < 41bp 1 0.223762391192918 1 0.187185674905777 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599419 chr12:57599437 nonsynonymous SNV 0.997 2 39 hm5C_associated_SNPs_17467 0 0 0 0 2 LRP1 chr12:57599341 3'AG 57599341 Downstream 97bp
chr12 57599437 57599437 1 + C T BRCA 57599419 + 57599399 57599439 41 CGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGACGC CGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGATGC < 41bp 1 0.223762391192918 1 0.187185674905777 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599419 chr12:57599437 nonsynonymous SNV 0.997 2 39 hm5C_associated_SNPs_17467 0 0 0 0 2 LRP1 chr12:57599460 5'GT 57599460 Upstream 24bp
chr12 7019087 7019087 1 + G C BRCA 7019093 + 7019073 7019113 41 AGGTGGAAGGCTTGGAGGATCTGAGCAATCTCACCACCTTG AGGTGGAAGGCTTGCAGGATCTGAGCAATCTCACCACCTTG < 41bp 1 0.672716480745004 1 0.0573683679103851 experiment 0.654567038509992 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRRC23 ENSG00000010626 CDS Human protein_coding chr12:7019093 chr12:7019087 nonsynonymous SNV 0.892 3 15 hm5C_associated_SNPs_17468 0 0 0 0 1 LRRC23 chr12:7019054 3'AG 7019054 Downstream 34bp
chr2 238664814 238664814 1 + G C BRCA 238664803 + 238664783 238664823 41 TTTGCTGAAGTCAAGGAGGCCCTGAAGCAAAGAGAGGAAAT TTTGCTGAAGTCAAGGAGGCCCTGAAGCAAACAGAGGAAAT < 41bp 1 0.143405654014289 1 0.0940294861793518 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238664803 chr2:238664814 nonsynonymous SNV 0.999 2 32 hm5C_associated_SNPs_17469 0 0 1 0 2 LRRFIP1 chr2:238664738 3'AG 238664738 Downstream 77bp
chr2 238664814 238664814 1 + G C BRCA 238664803 + 238664783 238664823 41 TTTGCTGAAGTCAAGGAGGCCCTGAAGCAAAGAGAGGAAAT TTTGCTGAAGTCAAGGAGGCCCTGAAGCAAACAGAGGAAAT < 41bp 1 0.143405654014289 1 0.0940294861793518 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238664803 chr2:238664814 nonsynonymous SNV 0.999 2 32 hm5C_associated_SNPs_17469 0 0 1 0 2 LRRFIP1 chr2:238664830 5'GT 238664830 Upstream 17bp
chr19 35749935 35749935 1 + A G BRCA 35749925 + 35749905 35749945 41 CCGTGGTCTCAGCCCAGGACCTCCAGGGGAACAATGAGGCC CCGTGGTCTCAGCCCAGGACCTCCAGGGGAGCAATGAGGCC < 41bp 1 0.758004766372526 1 0.927673101425171 experiment 0.483990467254948 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35749925 chr19:35749935 nonsynonymous SNV 0.987 3 31 hm5C_associated_SNPs_17470 0 0 1 0 2 LSR chr19:35749848 3'AG 35749848 Downstream 88bp
chr19 35749935 35749935 1 + A G BRCA 35749925 + 35749905 35749945 41 CCGTGGTCTCAGCCCAGGACCTCCAGGGGAACAATGAGGCC CCGTGGTCTCAGCCCAGGACCTCCAGGGGAGCAATGAGGCC < 41bp 1 0.758004766372526 1 0.927673101425171 experiment 0.483990467254948 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35749925 chr19:35749935 nonsynonymous SNV 0.987 3 31 hm5C_associated_SNPs_17470 0 0 1 0 2 LSR chr19:35749967 5'GT 35749967 Upstream 33bp
chr7 139094326 139094326 1 + G C BRCA 139094319 + 139094299 139094339 41 TGTTTTTAAGAGAGTCGTAGCTGAGAAGCAGGAGAAAAGAA TGTTTTTAAGAGAGTCGTAGCTGAGAACCAGGAGAAAAGAA < 41bp 1 0.456820430959303 1 0.335685014724731 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094319 chr7:139094326 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_17471 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 18bp
chr7 139094326 139094326 1 + G C BRCA 139094319 + 139094299 139094339 41 TGTTTTTAAGAGAGTCGTAGCTGAGAAGCAGGAGAAAAGAA TGTTTTTAAGAGAGTCGTAGCTGAGAACCAGGAGAAAAGAA < 41bp 1 0.456820430959303 1 0.335685014724731 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094319 chr7:139094326 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_17471 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 75bp
chr7 139094326 139094326 1 + G C BRCA 139094341 + 139094321 139094361 41 GAGAAGCAGGAGAAAAGAAACCAGGAACGGCTGAAACGAAG GAGAACCAGGAGAAAAGAAACCAGGAACGGCTGAAACGAAG < 41bp 1 0.455979201546698 1 0.407691299915314 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094341 chr7:139094326 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_17472 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 18bp
chr7 139094326 139094326 1 + G C BRCA 139094341 + 139094321 139094361 41 GAGAAGCAGGAGAAAAGAAACCAGGAACGGCTGAAACGAAG GAGAACCAGGAGAAAAGAAACCAGGAACGGCTGAAACGAAG < 41bp 1 0.455979201546698 1 0.407691299915314 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094341 chr7:139094326 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_17472 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 75bp
chr7 139094321 139094321 1 + G A BRCA 139094319 + 139094299 139094339 41 TGTTTTTAAGAGAGTCGTAGCTGAGAAGCAGGAGAAAAGAA TGTTTTTAAGAGAGTCGTAGCTAAGAAGCAGGAGAAAAGAA < 41bp 1 0.347977673558233 1 0.137699246406555 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094319 chr7:139094321 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_17473 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 13bp
chr7 139094321 139094321 1 + G A BRCA 139094319 + 139094299 139094339 41 TGTTTTTAAGAGAGTCGTAGCTGAGAAGCAGGAGAAAAGAA TGTTTTTAAGAGAGTCGTAGCTAAGAAGCAGGAGAAAAGAA < 41bp 1 0.347977673558233 1 0.137699246406555 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094319 chr7:139094321 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_17473 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 80bp
chr7 139094321 139094321 1 + G A BRCA 139094341 + 139094321 139094361 41 GAGAAGCAGGAGAAAAGAAACCAGGAACGGCTGAAACGAAG AAGAAGCAGGAGAAAAGAAACCAGGAACGGCTGAAACGAAG < 41bp 1 0.474426312067298 1 0.436141610145569 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094341 chr7:139094321 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_17474 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 13bp
chr7 139094321 139094321 1 + G A BRCA 139094341 + 139094321 139094361 41 GAGAAGCAGGAGAAAAGAAACCAGGAACGGCTGAAACGAAG AAGAAGCAGGAGAAAAGAAACCAGGAACGGCTGAAACGAAG < 41bp 1 0.474426312067298 1 0.436141610145569 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094341 chr7:139094321 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_17474 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 80bp
chr1 39888058 39888058 1 + G C BRCA 39888071 + 39888051 39888091 41 TCAGAAAGAACAAGTGGATCCTCTTCAGATGAAATTGCAGC TCAGAAACAACAAGTGGATCCTCTTCAGATGAAATTGCAGC < 41bp 1 0.0260018723405565 1 0.196841895580292 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39888071 chr1:39888058 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_17476 0 0 1 0 1 MACF1 chr1:39888046 3'AG 39888046 Downstream 13bp
chr17 12028665 12028665 1 + G T BRCA 12028682 + 12028662 12028702 41 GATGTCTGGAGTTTGGGGATCACATTGGTATGTTTATGCTG GATTTCTGGAGTTTGGGGATCACATTGGTATGTTTATGCTG < 41bp 1 0.427038877043877 1 0.119916349649429 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12028682 chr17:12028665 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_17479 0 0 1 0 2 MAP2K4 chr17:12028611 3'AG 12028611 Downstream 55bp
chr17 12028665 12028665 1 + G T BRCA 12028682 + 12028662 12028702 41 GATGTCTGGAGTTTGGGGATCACATTGGTATGTTTATGCTG GATTTCTGGAGTTTGGGGATCACATTGGTATGTTTATGCTG < 41bp 1 0.427038877043877 1 0.119916349649429 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12028682 chr17:12028665 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_17479 0 0 1 0 2 MAP2K4 chr17:12028688 5'GT 12028688 Upstream 24bp
chr5 56183211 56183211 1 + A G BRCA 56183208 + 56183188 56183228 41 GCTGTGTTTGTTGACAGGTGCCAATTTGCTAATTGACAGCA GCTGTGTTTGTTGACAGGTGCCAGTTTGCTAATTGACAGCA < 41bp 1 0.0776810388377796 1 0.132865458726883 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP3K1 ENSG00000095015 CDS Human protein_coding chr5:56183208 chr5:56183211 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_17480 0 0 0 0 1 MAP3K1 chr5:56183205 3'AG 56183205 Downstream 7bp
chr16 1793389 1793389 1 + G C BRCA 1793369 + 1793349 1793389 41 ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACG ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACC < 41bp 1 0.172040200897133 1 0.125252962112427 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1793369 chr16:1793389 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_17483 0 0 1 0 3 MAPK8IP3 chr16:1793333 3'AG 1793333 Downstream 57bp
chr16 1793389 1793389 1 + G C BRCA 1793369 + 1793349 1793389 41 ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACG ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACC < 41bp 1 0.172040200897133 1 0.125252962112427 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1793369 chr16:1793389 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_17483 0 0 1 0 3 MAPK8IP3 chr16:1793336 3'AG 1793336 Downstream 54bp
chr16 1793389 1793389 1 + G C BRCA 1793369 + 1793349 1793389 41 ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACG ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACC < 41bp 1 0.172040200897133 1 0.125252962112427 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1793369 chr16:1793389 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_17483 0 0 1 0 3 MAPK8IP3 chr16:1793477 5'GT 1793477 Upstream 89bp
chr1 46496719 46496719 1 + G C BRCA 46496735 + 46496715 46496755 41 CACAGAGAGTGACTCAAGCCCTCCAATGACAGTGCGACGCC CACACAGAGTGACTCAAGCCCTCCAATGACAGTGCGACGCC < 41bp 1 0.748312480185258 1 0.971600949764252 experiment 0.503375039629484 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MAST2 ENSG00000086015 CDS Human protein_coding chr1:46496735 chr1:46496719 nonsynonymous SNV 0.993 4 5 hm5C_associated_SNPs_17484 0 0 0 0 1 MAST2 chr1:46496679 3'AG 46496679 Downstream 41bp
chr19 18254639 18254639 1 + C T BRCA 18254659 + 18254639 18254679 41 CAGCCCATCTCTCCTGAATACCATCAGCCTGGACACAATGC TAGCCCATCTCTCCTGAATACCATCAGCCTGGACACAATGC < 41bp 1 0.0148217165256762 1 0.0152736604213715 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18254659 chr19:18254639 synonymous SNV . 0 1 hm5C_associated_SNPs_17485 0 0 1 0 1 MAST3 chr19:18254573 3'AG 18254573 Downstream 67bp
chr19 7589918 7589918 1 + C A BRCA 7589936 + 7589916 7589956 41 CACCCCCAGAAGAGGAAGACCTTCGCCGTCGTCTCAAATAC CAACCCCAGAAGAGGAAGACCTTCGCCGTCGTCTCAAATAC < 41bp 1 0.328947612262314 1 0.150295585393906 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7589936 chr19:7589918 nonsynonymous SNV 0.590 1 3 hm5C_associated_SNPs_17486 0 0 1 0 1 MCOLN1 chr19:7589847 3'AG 7589847 Downstream 72bp
chr16 21636383 21636383 1 + G C BRCA 21636393 + 21636373 21636413 41 GAGCCAACTAGAGGCAGGGTCATCCTTGCCCTTGTCCTCCC GAGCCAACTACAGGCAGGGTCATCCTTGCCCTTGTCCTCCC < 41bp 1 0.324243094660515 1 0.0936958491802216 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL9 ENSG00000197006 CDS Human protein_coding chr16:21636393 chr16:21636383 nonsynonymous SNV 0.995 1 11 hm5C_associated_SNPs_17487 0 0 1 0 1 METTL9 chr16:21636436 5'GT 21636436 Upstream 54bp
chr18 19348649 19348649 1 + G C BRCA 19348657 + 19348637 19348677 41 TTGCAGGTGCCAGAGTGGTGCGAGGAGTGGACTGGCAGTGG TTGCAGGTGCCACAGTGGTGCGAGGAGTGGACTGGCAGTGG < 41bp 1 0.750852754389226 1 0.70682030916214 experiment 0.498294491221547 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIB1 ENSG00000101752 CDS Human protein_coding chr18:19348657 chr18:19348649 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_17488 0 0 1 0 1 MIB1 chr18:19348713 5'GT 19348713 Upstream 65bp
chr18 19348649 19348649 1 + G C BRCA 19348668 + 19348648 19348688 41 AGAGTGGTGCGAGGAGTGGACTGGCAGTGGGAAGATCAAGA ACAGTGGTGCGAGGAGTGGACTGGCAGTGGGAAGATCAAGA < 41bp 1 0.616580080322154 1 0.102976202964783 experiment 0.766839839355692 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIB1 ENSG00000101752 CDS Human protein_coding chr18:19348668 chr18:19348649 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_17489 0 0 1 0 1 MIB1 chr18:19348713 5'GT 19348713 Upstream 65bp
chr14 61285489 61285489 1 + G C BRCA 61285479 + 61285459 61285499 41 TTGCTCTGCTTTTGGCTCAGCATAAAGATAGATCTACCCAA TTGCTCTGCTTTTGGCTCAGCATAAAGATACATCTACCCAA < 41bp 1 0.374627291067932 1 0.204456686973572 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61285479 chr14:61285489 nonsynonymous SNV 0.879 1 31 hm5C_associated_SNPs_17493 0 0 1 0 2 MNAT1 chr14:61285440 3'AG 61285440 Downstream 50bp
chr14 61285489 61285489 1 + G C BRCA 61285479 + 61285459 61285499 41 TTGCTCTGCTTTTGGCTCAGCATAAAGATAGATCTACCCAA TTGCTCTGCTTTTGGCTCAGCATAAAGATACATCTACCCAA < 41bp 1 0.374627291067932 1 0.204456686973572 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61285479 chr14:61285489 nonsynonymous SNV 0.879 1 31 hm5C_associated_SNPs_17493 0 0 1 0 2 MNAT1 chr14:61285565 5'GT 61285565 Upstream 77bp
chr16 816661 816661 1 + C T BRCA 816657 + 816637 816677 41 CCACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCC CCACAAGGCTCCTCGGCGGCCCCTTCCACAGGTGGCCACCC < 41bp 1 0.0257426415241167 1 0.0704742074012756 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816657 chr16:816661 synonymous SNV . 0 25 hm5C_associated_SNPs_17495 0 0 0 0 1 MSLN chr16:816644 3'AG 816644 Downstream 18bp
chr16 816661 816661 1 + C T BRCA 816658 + 816638 816678 41 CACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCCT CACAAGGCTCCTCGGCGGCCCCTTCCACAGGTGGCCACCCT < 41bp 1 0.00503872241282694 1 0.0803464353084564 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816658 chr16:816661 synonymous SNV . 0 24 hm5C_associated_SNPs_17496 0 0 0 0 1 MSLN chr16:816644 3'AG 816644 Downstream 18bp
chr17 48595031 48595031 1 + G C BRCA 48595045 + 48595025 48595065 41 TTAAGAGAATTGCACTTGCTCGAGGGAACACCCAGGTTTGT TTAAGACAATTGCACTTGCTCGAGGGAACACCCAGGTTTGT < 41bp 1 0.724456796495716 1 0.844249725341797 experiment 0.551086407008569 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MYCBPAP ENSG00000136449 CDS Human protein_coding chr17:48595045 chr17:48595031 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_17498 0 0 0 5 2 MYCBPAP chr17:48594956 3'AG 48594956 Downstream 76bp
chr17 48595031 48595031 1 + G C BRCA 48595045 + 48595025 48595065 41 TTAAGAGAATTGCACTTGCTCGAGGGAACACCCAGGTTTGT TTAAGACAATTGCACTTGCTCGAGGGAACACCCAGGTTTGT < 41bp 1 0.724456796495716 1 0.844249725341797 experiment 0.551086407008569 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MYCBPAP ENSG00000136449 CDS Human protein_coding chr17:48595045 chr17:48595031 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_17498 0 0 0 5 2 MYCBPAP chr17:48595059 5'GT 48595059 Upstream 29bp
chr19 50753926 50753926 1 + T C BRCA 50753921 + 50753901 50753941 41 CTGCGGGATCAGGCCGACTTCAGTGTTCTCCACTACGCGGG CTGCGGGATCAGGCCGACTTCAGTGCTCTCCACTACGCGGG < 41bp 1 0.608654158200303 1 0.708989262580872 experiment 0.782691683599394 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50753921 chr19:50753926 nonsynonymous SNV 0.987 1 26 hm5C_associated_SNPs_17499 0 0 0 0 1 MYH14 chr19:50753945 5'GT 50753945 Upstream 20bp
chr18 56063421 56063421 1 + C G BRCA 56063414 + 56063394 56063434 41 TGCAGCTTTAATCGCCTTGACTTACCTCCATATGAAACCTT TGCAGCTTTAATCGCCTTGACTTACCTGCATATGAAACCTT < 41bp 1 0.0410890881830614 1 0.0631028413772583 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NEDD4L ENSG00000049759 CDS Human protein_coding chr18:56063414 chr18:56063421 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_17503 0 0 1 0 1 NEDD4L chr18:56063399 3'AG 56063399 Downstream 23bp
chr10 5495482 5495482 1 + G A BRCA 5495471 + 5495451 5495491 41 GTTGACAAGAATAGGAGAAGCAACCAAGCCTGATGGAACAG GTTGACAAGAATAGGAGAAGCAACCAAGCCTAATGGAACAG < 41bp 1 0.362142677465337 1 0.235346704721451 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NET1 ENSG00000173848 CDS Human protein_coding chr10:5495471 chr10:5495482 nonsynonymous SNV 0.955 0 32 hm5C_associated_SNPs_17504 0 0 1 0 2 NET1 chr10:5495447 3'AG 5495447 Downstream 36bp
chr10 5495482 5495482 1 + G A BRCA 5495471 + 5495451 5495491 41 GTTGACAAGAATAGGAGAAGCAACCAAGCCTGATGGAACAG GTTGACAAGAATAGGAGAAGCAACCAAGCCTAATGGAACAG < 41bp 1 0.362142677465337 1 0.235346704721451 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NET1 ENSG00000173848 CDS Human protein_coding chr10:5495471 chr10:5495482 nonsynonymous SNV 0.955 0 32 hm5C_associated_SNPs_17504 0 0 1 0 2 NET1 chr10:5495523 5'GT 5495523 Upstream 42bp
chr1 161088976 161088976 1 + G A BRCA 161088961 + 161088941 161088981 41 TCTCCTCTTCCTCCTGCGAACTGCCCCTGGTGGCTGTGTGC TCTCCTCTTCCTCCTGCGAACTGCCCCTGGTGGCTATGTGC < 41bp 1 0.330407995522493 1 0.0770897567272186 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NIT1 ENSG00000158793 CDS Human protein_coding chr1:161088961 chr1:161088976 nonsynonymous SNV 1.000 5 36 hm5C_associated_SNPs_17508 0 0 1 0 1 NIT1 chr1:161088924 3'AG 161088924 Downstream 53bp
chr8 126194375 126194375 1 + G C BRCA 126194360 + 126194340 126194380 41 CTTAGGTGAAAGAAGAACGTCCAGAAAAAATACCAGATTTA CTTAGGTGAAAGAAGAACGTCCAGAAAAAATACCACATTTA < 41bp 1 0.35671482800105 1 0.212211430072784 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NSMCE2 ENSG00000156831 CDS Human protein_coding chr8:126194360 chr8:126194375 nonsynonymous SNV 0.954 4 36 hm5C_associated_SNPs_17510 0 0 1 0 1 NSMCE2 chr8:126194345 3'AG 126194345 Downstream 31bp
chr12 69082816 69082816 1 + C G BRCA 69082818 + 69082798 69082838 41 CTGCACGGAAACAGAGTGCTCAGAAAAGAGTTTTACGTATC CTGCACGGAAACAGAGTGGTCAGAAAAGAGTTTTACGTATC < 41bp 1 0.715439079593877 1 0.464072585105896 experiment 0.569121840812245 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69082818 chr12:69082816 nonsynonymous SNV 0.996 2 19 hm5C_associated_SNPs_17513 0 0 1 0 2 NUP107 chr12:69082742 3'AG 69082742 Downstream 75bp
chr12 69082816 69082816 1 + C G BRCA 69082818 + 69082798 69082838 41 CTGCACGGAAACAGAGTGCTCAGAAAAGAGTTTTACGTATC CTGCACGGAAACAGAGTGGTCAGAAAAGAGTTTTACGTATC < 41bp 1 0.715439079593877 1 0.464072585105896 experiment 0.569121840812245 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69082818 chr12:69082816 nonsynonymous SNV 0.996 2 19 hm5C_associated_SNPs_17513 0 0 1 0 2 NUP107 chr12:69082833 5'GT 69082833 Upstream 18bp
chr1 228451893 228451893 1 + G C BRCA 228451881 + 228451861 228451901 41 GTGCAGGCTGAGGCGGGGACCAGTGCCACGCTGAGCTGCGA GTGCAGGCTGAGGCGGGGACCAGTGCCACGCTCAGCTGCGA < 41bp 1 0.114989849128234 1 0.847709476947784 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228451881 chr1:228451893 synonymous SNV . 0 33 hm5C_associated_SNPs_17515 0 0 0 0 1 OBSCN chr1:228451817 3'AG 228451817 Downstream 77bp
chr12 58114298 58114298 1 + C T BRCA 58114286 + 58114266 58114306 41 ACGAGAAACCTCAAGGAGATCTTCTTCAATATCTTGGTAAG ACGAGAAACCTCAAGGAGATCTTCTTCAATATTTTGGTAAG < 41bp 1 0.353696550567407 1 0.0667219460010529 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control OS9 ENSG00000135506 CDS Human protein_coding chr12:58114286 chr12:58114298 synonymous SNV . 0 33 hm5C_associated_SNPs_17516 0 0 1 0 1 OS9 chr12:58114301 5'GT 58114301 Upstream 4bp
chr12 58114298 58114298 1 + C T BRCA 58114289 + 58114269 58114309 41 AGAAACCTCAAGGAGATCTTCTTCAATATCTTGGTAAGAGG AGAAACCTCAAGGAGATCTTCTTCAATATTTTGGTAAGAGG < 41bp 1 0.528906425114208 1 0.740516245365143 experiment 0.942187149771583 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control OS9 ENSG00000135506 CDS Human protein_coding chr12:58114289 chr12:58114298 synonymous SNV . 0 30 hm5C_associated_SNPs_17517 0 0 1 0 1 OS9 chr12:58114301 5'GT 58114301 Upstream 4bp
chr20 3888593 3888593 1 + G C BRCA 3888598 + 3888578 3888618 41 CCATGGTTTGGACTGGATATCGGTGGAACTCTGGTCAAGCT CCATGGTTTGGACTGCATATCGGTGGAACTCTGGTCAAGCT < 41bp 1 0.603173934793086 1 0.710408687591553 experiment 0.793652130413828 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PANK2 ENSG00000125779 CDS Human protein_coding chr20:3888598 chr20:3888593 nonsynonymous SNV 1.000 5 16 hm5C_associated_SNPs_17518 0 0 1 0 1 PANK2 chr20:3888573 3'AG 3888573 Downstream 21bp
chr11 65389721 65389721 1 + G T BRCA 65389719 + 65389699 65389739 41 CCCTGCACGAATCCCAGGAGCAGACACTGATGGAAGAAGCG CCCTGCACGAATCCCAGGAGCATACACTGATGGAAGAAGCG < 41bp 1 0.0138765699520809 1 0.181358933448792 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65389719 chr11:65389721 nonsynonymous SNV 0.988 1 23 hm5C_associated_SNPs_17521 0 0 1 0 1 PCNX3 chr11:65389716 3'AG 65389716 Downstream 6bp
chr10 105179384 105179384 1 + C T BRCA 105179366 + 105179346 105179386 41 CCCAAGAACTTCTCAGAAATCCATCCTGGAATGCTGCTCAT CCCAAGAACTTCTCAGAAATCCATCCTGGAATGCTGCTTAT < 41bp 1 0.0623419434801538 1 0.170932948589325 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105179366 chr10:105179384 synonymous SNV . 0 39 hm5C_associated_SNPs_17522 0 0 1 0 2 PDCD11 chr10:105179295 3'AG 105179295 Downstream 90bp
chr10 105179384 105179384 1 + C T BRCA 105179366 + 105179346 105179386 41 CCCAAGAACTTCTCAGAAATCCATCCTGGAATGCTGCTCAT CCCAAGAACTTCTCAGAAATCCATCCTGGAATGCTGCTTAT < 41bp 1 0.0623419434801538 1 0.170932948589325 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105179366 chr10:105179384 synonymous SNV . 0 39 hm5C_associated_SNPs_17522 0 0 1 0 2 PDCD11 chr10:105179465 5'GT 105179465 Upstream 82bp
chrX 19373834 19373834 1 + G A BRCA 19373838 + 19373818 19373858 41 TATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT TATCCTGTGCGTCCGAAAGGCAACAAGGTTTGCTGCTGCCT < 41bp 1 0.658117305635708 1 0.229483604431152 experiment 0.683765388728585 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19373838 chrX:19373834 nonsynonymous SNV 0.998 5 17 hm5C_associated_SNPs_17523 0 0 1 0 2 PDHA1 chrX:19373804 3'AG 19373804 Downstream 31bp
chrX 19373834 19373834 1 + G A BRCA 19373838 + 19373818 19373858 41 TATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT TATCCTGTGCGTCCGAAAGGCAACAAGGTTTGCTGCTGCCT < 41bp 1 0.658117305635708 1 0.229483604431152 experiment 0.683765388728585 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19373838 chrX:19373834 nonsynonymous SNV 0.998 5 17 hm5C_associated_SNPs_17523 0 0 1 0 2 PDHA1 chrX:19373875 5'GT 19373875 Upstream 42bp
chrX 19373844 19373844 1 + G A BRCA 19373838 + 19373818 19373858 41 TATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT TATCCTGTGCGTCCGAGAGGCAACAAAGTTTGCTGCTGCCT < 41bp 1 0.607946295315388 1 0.336463510990143 experiment 0.784107409369224 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19373838 chrX:19373844 nonsynonymous SNV 0.997 1 27 hm5C_associated_SNPs_17524 0 0 1 0 2 PDHA1 chrX:19373804 3'AG 19373804 Downstream 41bp
chrX 19373844 19373844 1 + G A BRCA 19373838 + 19373818 19373858 41 TATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT TATCCTGTGCGTCCGAGAGGCAACAAAGTTTGCTGCTGCCT < 41bp 1 0.607946295315388 1 0.336463510990143 experiment 0.784107409369224 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19373838 chrX:19373844 nonsynonymous SNV 0.997 1 27 hm5C_associated_SNPs_17524 0 0 1 0 2 PDHA1 chrX:19373875 5'GT 19373875 Upstream 32bp
chr1 249210807 249210807 1 + C G BRCA 249210825 + 249210805 249210845 41 GTCATTGCTGGGAGAGGTATCCACTCAAAGGTGAAGTCTGC GTGATTGCTGGGAGAGGTATCCACTCAAAGGTGAAGTCTGC < 41bp 1 0.200342707820842 1 0.329012274742126 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249210825 chr1:249210807 synonymous SNV . 0 3 hm5C_associated_SNPs_17526 0 0 1 0 1 PGBD2 chr1:249210801 3'AG 249210801 Downstream 7bp
chrX 77378415 77378415 1 + T C BRCA 77378418 + 77378398 77378438 41 TGGTGGTGGAATGGCTTTTACCTTCCTTAAGGTGCTCAACA TGGTGGTGGAATGGCTTCTACCTTCCTTAAGGTGCTCAACA < 41bp 1 0.0241625438497796 1 0.171668648719788 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378418 chrX:77378415 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_17527 0 0 1 1 2 PGK1 chrX:77378332 3'AG 77378332 Downstream 84bp
chrX 77378415 77378415 1 + T C BRCA 77378418 + 77378398 77378438 41 TGGTGGTGGAATGGCTTTTACCTTCCTTAAGGTGCTCAACA TGGTGGTGGAATGGCTTCTACCTTCCTTAAGGTGCTCAACA < 41bp 1 0.0241625438497796 1 0.171668648719788 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378418 chrX:77378415 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_17527 0 0 1 1 2 PGK1 chrX:77378446 5'GT 77378446 Upstream 32bp
chr12 9070338 9070338 1 + C G BRCA 9070333 + 9070313 9070353 41 GGGAGTTCTAGCTCAGGGGGCAGCTCTCGGCCCCAGATAGC GGGAGTTCTAGCTCAGGGGGCAGCTGTCGGCCCCAGATAGC < 41bp 1 0.299978840574384 1 0.205008089542389 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHC1 ENSG00000111752 CDS Human protein_coding chr12:9070333 chr12:9070338 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_17528 0 0 0 0 1 PHC1 chr12:9070387 5'GT 9070387 Upstream 50bp
chr1 6681554 6681554 1 + A C BRCA 6681570 + 6681550 6681590 41 CCACACCTGGATTCACCTGTCCTGTGCGAAAATCCGGAAAT CCACCCCTGGATTCACCTGTCCTGTGCGAAAATCCGGAAAT < 41bp 1 0.176752934151103 1 0.244434028863907 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF13 ENSG00000116273 CDS Human protein_coding chr1:6681570 chr1:6681554 nonsynonymous SNV 1.000 5 5 hm5C_associated_SNPs_17529 0 0 1 0 1 PHF13 chr1:6681471 3'AG 6681471 Downstream 84bp
chr11 118516531 118516531 1 + C A BRCA 118516515 + 118516495 118516535 41 GATGCTGAAAGAGGCTCATGCAGAGAAGAACCGGCTCATGG GATGCTGAAAGAGGCTCATGCAGAGAAGAACCGGCTAATGG < 41bp 1 0.596430631809079 1 0.724093496799469 experiment 0.807138736381842 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118516515 chr11:118516531 synonymous SNV . 0 37 hm5C_associated_SNPs_17530 0 0 1 0 1 PHLDB1 chr11:118516453 3'AG 118516453 Downstream 79bp
chr20 43243339 43243339 1 + G A BRCA 43243326 + 43243306 43243346 41 AAGCTGGCTGGAGACATGGGCGAGCTGGCACTCGAGGGGGC AAGCTGGCTGGAGACATGGGCGAGCTGGCACTCAAGGGGGC < 41bp 1 0.641685655015789 1 0.482089698314667 experiment 0.716628689968421 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKIG ENSG00000168734 CDS Human protein_coding chr20:43243326 chr20:43243339 nonsynonymous SNV 0.092 1 34 hm5C_associated_SNPs_17531 0 0 1 0 1 PKIG chr20:43243348 5'GT 43243348 Upstream 10bp
chr14 68042162 68042162 1 + C G BRCA 68042177 + 68042157 68042197 41 ATCTTCTACTACTATCGGAGCCATGAGGACAAGGTACTTCT ATCTTGTACTACTATCGGAGCCATGAGGACAAGGTACTTCT < 41bp 1 0.0434764212395363 1 0.137944012880325 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68042177 chr14:68042162 nonsynonymous SNV 0.995 1 6 hm5C_associated_SNPs_17532 0 0 1 0 2 PLEKHH1 chr14:68042109 3'AG 68042109 Downstream 54bp
chr14 68042162 68042162 1 + C G BRCA 68042177 + 68042157 68042197 41 ATCTTCTACTACTATCGGAGCCATGAGGACAAGGTACTTCT ATCTTGTACTACTATCGGAGCCATGAGGACAAGGTACTTCT < 41bp 1 0.0434764212395363 1 0.137944012880325 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68042177 chr14:68042162 nonsynonymous SNV 0.995 1 6 hm5C_associated_SNPs_17532 0 0 1 0 2 PLEKHH1 chr14:68042189 5'GT 68042189 Upstream 28bp
chr14 68042170 68042170 1 + A C BRCA 68042177 + 68042157 68042197 41 ATCTTCTACTACTATCGGAGCCATGAGGACAAGGTACTTCT ATCTTCTACTACTCTCGGAGCCATGAGGACAAGGTACTTCT < 41bp 1 0.0421682300964795 1 0.0932303667068481 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68042177 chr14:68042170 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_17533 0 0 1 0 2 PLEKHH1 chr14:68042109 3'AG 68042109 Downstream 62bp
chr14 68042170 68042170 1 + A C BRCA 68042177 + 68042157 68042197 41 ATCTTCTACTACTATCGGAGCCATGAGGACAAGGTACTTCT ATCTTCTACTACTCTCGGAGCCATGAGGACAAGGTACTTCT < 41bp 1 0.0421682300964795 1 0.0932303667068481 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68042177 chr14:68042170 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_17533 0 0 1 0 2 PLEKHH1 chr14:68042189 5'GT 68042189 Upstream 20bp
chr1 45270401 45270401 1 + C A BRCA 45270421 + 45270401 45270441 41 CTGGGTATCCTGCGGTACTTCGCCTCCTACATGGAGCAGCA ATGGGTATCCTGCGGTACTTCGCCTCCTACATGGAGCAGCA < 41bp 1 0.692226760135827 1 0.428650945425034 experiment 0.615546479728347 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45270421 chr1:45270401 nonsynonymous SNV 0.998 0 1 hm5C_associated_SNPs_17534 0 0 0 0 2 PLK3 chr1:45270322 3'AG 45270322 Downstream 80bp
chr1 45270401 45270401 1 + C A BRCA 45270421 + 45270401 45270441 41 CTGGGTATCCTGCGGTACTTCGCCTCCTACATGGAGCAGCA ATGGGTATCCTGCGGTACTTCGCCTCCTACATGGAGCAGCA < 41bp 1 0.692226760135827 1 0.428650945425034 experiment 0.615546479728347 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45270421 chr1:45270401 nonsynonymous SNV 0.998 0 1 hm5C_associated_SNPs_17534 0 0 0 0 2 PLK3 chr1:45270451 5'GT 45270451 Upstream 51bp
chr3 126739137 126739137 1 + C T BRCA 126739145 + 126739125 126739165 41 ACATATGCCATGCGGGTGCTCTTTCCTGGGATCGAGGACCA ACATATGCCATGTGGGTGCTCTTTCCTGGGATCGAGGACCA < 41bp 1 0.0666547763107687 1 0.126771122217178 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126739145 chr3:126739137 nonsynonymous SNV 0.981 4 13 hm5C_associated_SNPs_17536 0 0 1 0 2 PLXNA1 chr3:126739045 3'AG 126739045 Downstream 93bp
chr3 126739137 126739137 1 + C T BRCA 126739145 + 126739125 126739165 41 ACATATGCCATGCGGGTGCTCTTTCCTGGGATCGAGGACCA ACATATGCCATGTGGGTGCTCTTTCCTGGGATCGAGGACCA < 41bp 1 0.0666547763107687 1 0.126771122217178 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126739145 chr3:126739137 nonsynonymous SNV 0.981 4 13 hm5C_associated_SNPs_17536 0 0 1 0 2 PLXNA1 chr3:126739187 5'GT 126739187 Upstream 51bp
chrX 153696522 153696522 1 + G T BRCA 153696529 + 153696509 153696549 41 ACGCCGTGCGCGTGCTCTTCCCGGGCATCGAGGCCCACCCG ACGCCGTGCGCGTTCTCTTCCCGGGCATCGAGGCCCACCCG < 41bp 1 0.561413172881846 1 0.896236419677734 experiment 0.877173654236307 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696529 chrX:153696522 synonymous SNV . 0 14 hm5C_associated_SNPs_17537 0 0 0 0 2 PLXNA3 chrX:153696425 3'AG 153696425 Downstream 98bp
chrX 153696522 153696522 1 + G T BRCA 153696529 + 153696509 153696549 41 ACGCCGTGCGCGTGCTCTTCCCGGGCATCGAGGCCCACCCG ACGCCGTGCGCGTTCTCTTCCCGGGCATCGAGGCCCACCCG < 41bp 1 0.561413172881846 1 0.896236419677734 experiment 0.877173654236307 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696529 chrX:153696522 synonymous SNV . 0 14 hm5C_associated_SNPs_17537 0 0 0 0 2 PLXNA3 chrX:153696567 5'GT 153696567 Upstream 46bp
chrX 153696522 153696522 1 + G T BRCA 153696537 + 153696517 153696557 41 CGCGTGCTCTTCCCGGGCATCGAGGCCCACCCGGTGCTCAA CGCGTTCTCTTCCCGGGCATCGAGGCCCACCCGGTGCTCAA < 41bp 1 0.639532681866748 1 0.955585598945618 experiment 0.720934636266503 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696537 chrX:153696522 synonymous SNV . 0 6 hm5C_associated_SNPs_17538 0 0 0 0 2 PLXNA3 chrX:153696425 3'AG 153696425 Downstream 98bp
chrX 153696522 153696522 1 + G T BRCA 153696537 + 153696517 153696557 41 CGCGTGCTCTTCCCGGGCATCGAGGCCCACCCGGTGCTCAA CGCGTTCTCTTCCCGGGCATCGAGGCCCACCCGGTGCTCAA < 41bp 1 0.639532681866748 1 0.955585598945618 experiment 0.720934636266503 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696537 chrX:153696522 synonymous SNV . 0 6 hm5C_associated_SNPs_17538 0 0 0 0 2 PLXNA3 chrX:153696567 5'GT 153696567 Upstream 46bp
chr12 94563009 94563009 1 + C T BRCA 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATCCATTCCGACCTGACATCCGTTTATGGTACCGTGGTAAT < 41bp 1 0.0498712588937968 1 0.101394027471542 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94563009 synonymous SNV . 0 30 hm5C_associated_SNPs_17539 0 0 1 0 2 PLXNC1 chr12:94562929 3'AG 94562929 Downstream 81bp
chr12 94563009 94563009 1 + C T BRCA 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATCCATTCCGACCTGACATCCGTTTATGGTACCGTGGTAAT < 41bp 1 0.0498712588937968 1 0.101394027471542 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94563009 synonymous SNV . 0 30 hm5C_associated_SNPs_17539 0 0 1 0 2 PLXNC1 chr12:94563069 5'GT 94563069 Upstream 61bp
chr10 118306869 118306869 1 + C T BRCA 118306849 + 118306829 118306869 41 CTCGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTAC CTCGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTAT < 41bp 1 0.276092641928013 1 0.0487162470817566 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306849 chr10:118306869 nonsynonymous SNV 0.179 1 41 hm5C_associated_SNPs_17540 0 0 0 0 2 PNLIP chr10:118306806 3'AG 118306806 Downstream 64bp
chr10 118306869 118306869 1 + C T BRCA 118306849 + 118306829 118306869 41 CTCGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTAC CTCGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTAT < 41bp 1 0.276092641928013 1 0.0487162470817566 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306849 chr10:118306869 nonsynonymous SNV 0.179 1 41 hm5C_associated_SNPs_17540 0 0 0 0 2 PNLIP chr10:118306960 5'GT 118306960 Upstream 92bp
chr10 118306869 118306869 1 + C T BRCA 118306851 + 118306831 118306871 41 CGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGG CGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTATGG < 41bp 1 0.66868875828421 1 0.194298923015594 experiment 0.662622483431581 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306851 chr10:118306869 nonsynonymous SNV 0.179 1 39 hm5C_associated_SNPs_17541 0 0 0 0 2 PNLIP chr10:118306806 3'AG 118306806 Downstream 64bp
chr10 118306869 118306869 1 + C T BRCA 118306851 + 118306831 118306871 41 CGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGG CGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTATGG < 41bp 1 0.66868875828421 1 0.194298923015594 experiment 0.662622483431581 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306851 chr10:118306869 nonsynonymous SNV 0.179 1 39 hm5C_associated_SNPs_17541 0 0 0 0 2 PNLIP chr10:118306960 5'GT 118306960 Upstream 92bp
chr10 118306869 118306869 1 + C T BRCA 118306853 + 118306833 118306873 41 GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAA GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTATGGAA < 41bp 1 0.242934381632923 1 0.127418696880341 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306853 chr10:118306869 nonsynonymous SNV 0.179 1 37 hm5C_associated_SNPs_17542 0 0 0 0 2 PNLIP chr10:118306806 3'AG 118306806 Downstream 64bp
chr10 118306869 118306869 1 + C T BRCA 118306853 + 118306833 118306873 41 GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAA GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTATGGAA < 41bp 1 0.242934381632923 1 0.127418696880341 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306853 chr10:118306869 nonsynonymous SNV 0.179 1 37 hm5C_associated_SNPs_17542 0 0 0 0 2 PNLIP chr10:118306960 5'GT 118306960 Upstream 92bp
chr10 118306869 118306869 1 + C T BRCA 118306854 + 118306834 118306874 41 CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAAA CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTATGGAAA < 41bp 1 0.49520915300964 1 0.509301483631134 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306854 chr10:118306869 nonsynonymous SNV 0.179 1 36 hm5C_associated_SNPs_17543 0 0 0 0 2 PNLIP chr10:118306806 3'AG 118306806 Downstream 64bp
chr10 118306869 118306869 1 + C T BRCA 118306854 + 118306834 118306874 41 CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAAA CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTATGGAAA < 41bp 1 0.49520915300964 1 0.509301483631134 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306854 chr10:118306869 nonsynonymous SNV 0.179 1 36 hm5C_associated_SNPs_17543 0 0 0 0 2 PNLIP chr10:118306960 5'GT 118306960 Upstream 92bp
chr3 184082777 184082777 1 + G A BRCA 184082795 + 184082775 184082815 41 GTGAATCTTTCAAGATGGATCTAATCTTAGATGTAAACATT GTAAATCTTTCAAGATGGATCTAATCTTAGATGTAAACATT < 41bp 1 0.20229360662664 1 0.0535378754138947 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2H ENSG00000163882 CDS Human protein_coding chr3:184082795 chr3:184082777 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_17546 0 0 1 0 1 POLR2H chr3:184082837 5'GT 184082837 Upstream 61bp
chr12 27832871 27832871 1 + G C BRCA 27832883 + 27832863 27832903 41 TAGACTTAGGAGAAGTCAATCAACTACATTCAACCCAGATG TAGACTTACGAGAAGTCAATCAACTACATTCAACCCAGATG < 41bp 1 0.163219966841974 1 0.379010766744614 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27832883 chr12:27832871 nonsynonymous SNV 0.997 3 9 hm5C_associated_SNPs_17548 0 0 0 0 1 PPFIBP1 chr12:27832866 3'AG 27832866 Downstream 6bp
chr8 26227655 26227655 1 + T A BRCA 26227656 + 26227636 26227676 41 GTCTATTTTCACAGTGTTGTCATGACTGGATCTTACAATAA GTCTATTTTCACAGTGTTGACATGACTGGATCTTACAATAA < 41bp 1 0.414597842940546 1 0.0731663107872009 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26227656 chr8:26227655 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_17550 0 0 1 0 1 PPP2R2A chr8:26227650 3'AG 26227650 Downstream 6bp
chr14 35579802 35579802 1 - A C BRCA 35579783 - 35579763 35579803 41 ATTAAGAGAGGAATCAAGAGCTGTCTTTCTACAAAGAAAAA AGTAAGAGAGGAATCAAGAGCTGTCTTTCTACAAAGAAAAA < 41bp 1 0.241454519465706 1 0.164282709360123 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP2R3C ENSG00000092020 CDS Human protein_coding chr14:35579783 chr14:35579802 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_17551 0 0 1 0 2 PPP2R3C chr14:35579731 5'GT 35579731 Upstream 72bp
chr14 35579802 35579802 1 - A C BRCA 35579783 - 35579763 35579803 41 ATTAAGAGAGGAATCAAGAGCTGTCTTTCTACAAAGAAAAA AGTAAGAGAGGAATCAAGAGCTGTCTTTCTACAAAGAAAAA < 41bp 1 0.241454519465706 1 0.164282709360123 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP2R3C ENSG00000092020 CDS Human protein_coding chr14:35579783 chr14:35579802 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_17551 0 0 1 0 2 PPP2R3C chr14:35579835 3'AG 35579835 Downstream 34bp
chr9 131897091 131897091 1 + G T BRCA 131897102 + 131897082 131897122 41 GCAGCCTTCGCTGCTTTCCTCTGCTGTCTCTGCAAGATTGG GCAGCCTTCTCTGCTTTCCTCTGCTGTCTCTGCAAGATTGG < 41bp 1 0.484852920531142 1 0.217782258987427 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPA ENSG00000119383 CDS Human protein_coding chr9:131897102 chr9:131897091 nonsynonymous SNV 0.998 3 10 hm5C_associated_SNPs_17552 0 0 1 0 2 PTPA chr9:131897074 3'AG 131897074 Downstream 18bp
chr9 131897091 131897091 1 + G T BRCA 131897102 + 131897082 131897122 41 GCAGCCTTCGCTGCTTTCCTCTGCTGTCTCTGCAAGATTGG GCAGCCTTCTCTGCTTTCCTCTGCTGTCTCTGCAAGATTGG < 41bp 1 0.484852920531142 1 0.217782258987427 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPA ENSG00000119383 CDS Human protein_coding chr9:131897102 chr9:131897091 nonsynonymous SNV 0.998 3 10 hm5C_associated_SNPs_17552 0 0 1 0 2 PTPA chr9:131897173 5'GT 131897173 Upstream 83bp
chrX 48759265 48759265 1 + G A BRCA 48759267 + 48759247 48759287 41 TCCTGGCTCTCCCCACATGACCCCAACTCCGTGGTTACCAA TCCTGGCTCTCCCCACATAACCCCAACTCCGTGGTTACCAA < 41bp 1 0.746225410319309 1 0.195550888776779 experiment 0.507549179361382 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759267 chrX:48759265 nonsynonymous SNV 1.000 3 19 hm5C_associated_SNPs_17554 0 0 1 1 2 PQBP1 chrX:48759207 3'AG 48759207 Downstream 59bp
chrX 48759265 48759265 1 + G A BRCA 48759267 + 48759247 48759287 41 TCCTGGCTCTCCCCACATGACCCCAACTCCGTGGTTACCAA TCCTGGCTCTCCCCACATAACCCCAACTCCGTGGTTACCAA < 41bp 1 0.746225410319309 1 0.195550888776779 experiment 0.507549179361382 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759267 chrX:48759265 nonsynonymous SNV 1.000 3 19 hm5C_associated_SNPs_17554 0 0 1 1 2 PQBP1 chrX:48759319 5'GT 48759319 Upstream 55bp
chr20 33764038 33764038 1 + C A BRCA 33764041 + 33764021 33764061 41 TCTAGAGCCCATGTCTTCTTCGAAGTGGCTGTGAATGGGAG TCTAGAGCCCATGTCTTATTCGAAGTGGCTGTGAATGGGAG < 41bp 1 0.775504414700366 1 0.886872172355652 experiment 0.448991170599267 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PROCR ENSG00000101000 CDS Human protein_coding chr20:33764041 chr20:33764038 nonsynonymous SNV 0.996 4 18 hm5C_associated_SNPs_17555 0 0 1 0 1 PROCR chr20:33763971 3'AG 33763971 Downstream 68bp
chrX 106893241 106893241 1 + A G BRCA 106893248 + 106893228 106893268 41 CCGTTTCTTACCTATTCAGCCATGTCCCTTTATAATAGAGT CCGTTTCTTACCTGTTCAGCCATGTCCCTTTATAATAGAGT < 41bp 1 0.0658731453481421 1 0.177348375320435 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106893248 chrX:106893241 synonymous SNV . 0 14 hm5C_associated_SNPs_17556 0 0 1 0 1 PRPS1 chrX:106893170 3'AG 106893170 Downstream 72bp
chrX 106893241 106893241 1 + A G BRCA 106893253 + 106893233 106893273 41 TCTTACCTATTCAGCCATGTCCCTTTATAATAGAGTAACTT TCTTACCTGTTCAGCCATGTCCCTTTATAATAGAGTAACTT < 41bp 1 0.105442663154219 1 0.0657326579093933 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106893253 chrX:106893241 synonymous SNV . 0 9 hm5C_associated_SNPs_17557 0 0 1 0 1 PRPS1 chrX:106893170 3'AG 106893170 Downstream 72bp
chr19 50096688 50096688 1 + A C BRCA 50096691 + 50096671 50096711 41 CTATGCCACCAACCACCACCCGGCAGGTACGGCCCCCATCC CTATGCCACCAACCACCCCCCGGCAGGTACGGCCCCCATCC < 41bp 1 0.698253308882043 1 0.904342353343964 experiment 0.603493382235913 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRR12 ENSG00000126464 CDS Human protein_coding chr19:50096691 chr19:50096688 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_17558 0 0 1 0 1 PRR12 chr19:50096696 5'GT 50096696 Upstream 9bp
chr2 232035376 232035376 1 + G A BRCA 232035362 + 232035342 232035382 41 ACCTGTGGCAGCACATGGCCCAAAAATCGAGGAGGAGGAAC ACCTGTGGCAGCACATGGCCCAAAAATCGAGGAGAAGGAAC < 41bp 1 0.582184714983364 1 0.122526586055756 experiment 0.835630570033272 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMD1 ENSG00000173692 CDS Human protein_coding chr2:232035362 chr2:232035376 nonsynonymous SNV 0.998 1 35 hm5C_associated_SNPs_17570 0 0 1 0 2 PSMD1 chr2:232035280 3'AG 232035280 Downstream 97bp
chr2 232035376 232035376 1 + G A BRCA 232035362 + 232035342 232035382 41 ACCTGTGGCAGCACATGGCCCAAAAATCGAGGAGGAGGAAC ACCTGTGGCAGCACATGGCCCAAAAATCGAGGAGAAGGAAC < 41bp 1 0.582184714983364 1 0.122526586055756 experiment 0.835630570033272 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMD1 ENSG00000173692 CDS Human protein_coding chr2:232035362 chr2:232035376 nonsynonymous SNV 0.998 1 35 hm5C_associated_SNPs_17570 0 0 1 0 2 PSMD1 chr2:232035435 5'GT 232035435 Upstream 60bp
chr19 808581 808581 1 + A G BRCA 808586 + 808566 808606 41 CACAAGCTGCACGGGAAGCCCATCCGCATCACGCTCTCGAA CACAAGCTGCACGGGGAGCCCATCCGCATCACGCTCTCGAA < 41bp 1 0.263294974710837 1 0.157258212566376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:808586 chr19:808581 nonsynonymous SNV 0.756 3 16 hm5C_associated_SNPs_17571 0 0 1 0 1 PTBP1 chr19:808546 3'AG 808546 Downstream 36bp
chr11 489687 489687 1 + G A BRCA 489680 + 489660 489700 41 CTCCTGCGGCTCGTCTTCTTCGTGAACGTGGGTGGCGTGGC CTCCTGCGGCTCGTCTTCTTCGTGAACATGGGTGGCGTGGC < 41bp 1 0.723926336206892 1 0.908969163894653 experiment 0.552147327586215 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control PTDSS2 ENSG00000174915 CDS Human protein_coding chr11:489680 chr11:489687 nonsynonymous SNV 0.989 1 28 hm5C_associated_SNPs_17572 0 0 1 0 2 PTDSS2 chr11:489588 3'AG 489588 Downstream 100bp
chr11 489687 489687 1 + G A BRCA 489680 + 489660 489700 41 CTCCTGCGGCTCGTCTTCTTCGTGAACGTGGGTGGCGTGGC CTCCTGCGGCTCGTCTTCTTCGTGAACATGGGTGGCGTGGC < 41bp 1 0.723926336206892 1 0.908969163894653 experiment 0.552147327586215 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control PTDSS2 ENSG00000174915 CDS Human protein_coding chr11:489680 chr11:489687 nonsynonymous SNV 0.989 1 28 hm5C_associated_SNPs_17572 0 0 1 0 2 PTDSS2 chr11:489733 5'GT 489733 Upstream 47bp
chr12 6879111 6879111 1 + G T BRCA 6879124 + 6879104 6879144 41 TGAGGAGGAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGG TGAGGAGTAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGG < 41bp 1 0.342489804347228 1 0.35182797908783 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMS ENSG00000159335 CDS Human protein_coding chr12:6879124 chr12:6879111 stopgain 0.996 0 8 hm5C_associated_SNPs_17573 0 0 1 0 2 PTMS chr12:6879087 3'AG 6879087 Downstream 25bp
chr12 6879111 6879111 1 + G T BRCA 6879124 + 6879104 6879144 41 TGAGGAGGAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGG TGAGGAGTAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGG < 41bp 1 0.342489804347228 1 0.35182797908783 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMS ENSG00000159335 CDS Human protein_coding chr12:6879124 chr12:6879111 stopgain 0.996 0 8 hm5C_associated_SNPs_17573 0 0 1 0 2 PTMS chr12:6879165 5'GT 6879165 Upstream 55bp
chr12 6879111 6879111 1 + G T BRCA 6879127 + 6879107 6879147 41 GGAGGAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGGAAG GGAGTAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGGAAG < 41bp 1 0.319291270434687 1 0.559151589870453 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMS ENSG00000159335 CDS Human protein_coding chr12:6879127 chr12:6879111 stopgain 0.996 0 5 hm5C_associated_SNPs_17574 0 0 1 0 2 PTMS chr12:6879087 3'AG 6879087 Downstream 25bp
chr12 6879111 6879111 1 + G T BRCA 6879127 + 6879107 6879147 41 GGAGGAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGGAAG GGAGTAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGGAAG < 41bp 1 0.319291270434687 1 0.559151589870453 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMS ENSG00000159335 CDS Human protein_coding chr12:6879127 chr12:6879111 stopgain 0.996 0 5 hm5C_associated_SNPs_17574 0 0 1 0 2 PTMS chr12:6879165 5'GT 6879165 Upstream 55bp
chr12 6879111 6879111 1 + G T BRCA 6879128 + 6879108 6879148 41 GAGGAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGGAAGA GAGTAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGGAAGA < 41bp 1 0.709902083773447 1 0.811845302581787 experiment 0.580195832453106 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMS ENSG00000159335 CDS Human protein_coding chr12:6879128 chr12:6879111 stopgain 0.996 0 4 hm5C_associated_SNPs_17575 0 0 1 0 2 PTMS chr12:6879087 3'AG 6879087 Downstream 25bp
chr12 6879111 6879111 1 + G T BRCA 6879128 + 6879108 6879148 41 GAGGAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGGAAGA GAGTAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGGAAGA < 41bp 1 0.709902083773447 1 0.811845302581787 experiment 0.580195832453106 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMS ENSG00000159335 CDS Human protein_coding chr12:6879128 chr12:6879111 stopgain 0.996 0 4 hm5C_associated_SNPs_17575 0 0 1 0 2 PTMS chr12:6879165 5'GT 6879165 Upstream 55bp
chr3 61975361 61975361 1 + C G BRCA 61975349 + 61975329 61975369 41 CTAGTGTCAGCTGTGGGGGCCGTCACCAGTCTCCTATTGAC CTAGTGTCAGCTGTGGGGGCCGTCACCAGTCTGCTATTGAC < 41bp 1 0.161064119443207 1 0.33543199300766 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:61975349 chr3:61975361 nonsynonymous SNV 0.998 5 33 hm5C_associated_SNPs_17576 0 0 1 0 1 PTPRG chr3:61975299 3'AG 61975299 Downstream 63bp
chr15 41021711 41021711 1 + T G BRCA 41021710 + 41021690 41021730 41 TTGTTTCCTGTAGGTATGCACTGCTTATTGTAGACAGTGCC TTGTTTCCTGTAGGTATGCACGGCTTATTGTAGACAGTGCC < 41bp 1 0.300269402738334 1 0.271614789962769 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RAD51 ENSG00000051180 CDS Human protein_coding chr15:41021710 chr15:41021711 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_17577 0 0 1 4 1 RAD51 chr15:41021703 3'AG 41021703 Downstream 9bp
chr3 25542765 25542765 1 + C A BRCA 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACCAGGAATCGATGACAATACTGTCGACTCCAGAAGTGCTT < 41bp 1 0.256733970937904 1 0.0839190781116486 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542765 stopgain 0.999 1 15 hm5C_associated_SNPs_17579 0 0 1 0 2 RARB chr3:25542673 3'AG 25542673 Downstream 93bp
chr3 25542765 25542765 1 + C A BRCA 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACCAGGAATCGATGACAATACTGTCGACTCCAGAAGTGCTT < 41bp 1 0.256733970937904 1 0.0839190781116486 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542765 stopgain 0.999 1 15 hm5C_associated_SNPs_17579 0 0 1 0 2 RARB chr3:25542814 5'GT 25542814 Upstream 50bp
chr3 50091809 50091809 1 + C G BRCA 50091805 + 50091785 50091825 41 TGGGCACCGATCTTCCTGTTCATTCTGCAAGAACCCAAGAG TGGGCACCGATCTTCCTGTTCATTGTGCAAGAACCCAAGAG < 41bp 1 0.181722335716741 1 0.0495773255825043 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50091805 chr3:50091809 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_17580 0 0 1 0 1 RBM6 chr3:50091828 5'GT 50091828 Upstream 20bp
chr1 145507682 145507682 1 + G A BRCA 145507671 + 145507651 145507691 41 CTCGATCGAAGGCGAGATGGCGGACGTGCTAGATCTTCACG CTCGATCGAAGGCGAGATGGCGGACGTGCTAAATCTTCACG < 41bp 1 0.269069442884949 1 0.161684334278107 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RBM8A ENSG00000131795 CDS Human other chr1:145507671 chr1:145507682 nonsynonymous SNV . 0 32 hm5C_associated_SNPs_17581 0 0 1 0 1 RBM8A chr1:145507733 5'GT 145507733 Upstream 52bp
chr1 145663210 145663210 1 + C G BRCA 145663218 + 145663198 145663238 41 TTTAGACCCTTTCTAAGTAGCAGTCCACTGGACCAAGATAA TTTAGACCCTTTGTAAGTAGCAGTCCACTGGACCAAGATAA < 41bp 1 0.0716153342261533 1 0.127664566040039 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF115 ENSG00000121848 CDS Human other chr1:145663218 chr1:145663210 nonsynonymous SNV . 0 13 hm5C_associated_SNPs_17582 0 0 1 0 1 RNF115 chr1:145663159 3'AG 145663159 Downstream 52bp
chrX 153628228 153628228 1 + A C BRCA 153628229 + 153628209 153628249 41 CATATCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCAT CATATCCGGGTGCGGCTCCCCCCCTTCCACGTCATCCGCAT < 41bp 1 0.345152050163738 1 0.049138605594635 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628229 chrX:153628228 nonsynonymous SNV 0.971 1 20 hm5C_associated_SNPs_17585 0 0 1 0 1 RPL10 chrX:153628282 5'GT 153628282 Upstream 55bp
chr17 37358625 37358625 1 + G A BRCA 37358628 + 37358608 37358648 41 ATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCG ATCCGCAAGCCTGTGACAGTCCATTCCCGGGCTCGATGCCG < 41bp 1 0.157690885225989 1 0.0465043783187866 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358628 chr17:37358625 synonymous SNV . 0 18 hm5C_associated_SNPs_17587 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 56bp
chr17 37358625 37358625 1 + G A BRCA 37358628 + 37358608 37358648 41 ATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCG ATCCGCAAGCCTGTGACAGTCCATTCCCGGGCTCGATGCCG < 41bp 1 0.157690885225989 1 0.0465043783187866 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358628 chr17:37358625 synonymous SNV . 0 18 hm5C_associated_SNPs_17587 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 68bp
chr17 37359326 37359326 1 + G A BRCA 37359313 + 37359293 37359333 41 TGAGGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATAC TGAGGAGAATGAGGATTTTGCGCCGGCTGCTCAAAAGATAC < 41bp 1 0.766897515571667 1 0.0775459110736847 experiment 0.466204968856665 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359313 chr17:37359326 nonsynonymous SNV 0.381 1 34 hm5C_associated_SNPs_17588 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 85bp
chr17 37359326 37359326 1 + G A BRCA 37359313 + 37359293 37359333 41 TGAGGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATAC TGAGGAGAATGAGGATTTTGCGCCGGCTGCTCAAAAGATAC < 41bp 1 0.766897515571667 1 0.0775459110736847 experiment 0.466204968856665 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359313 chr17:37359326 nonsynonymous SNV 0.381 1 34 hm5C_associated_SNPs_17588 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 37bp
chr17 37359326 37359326 1 + G A BRCA 37359316 + 37359296 37359336 41 GGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGT GGAGAATGAGGATTTTGCGCCGGCTGCTCAAAAGATACCGT < 41bp 1 0.393783890965753 1 0.322026312351227 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359316 chr17:37359326 nonsynonymous SNV 0.381 1 31 hm5C_associated_SNPs_17589 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 85bp
chr17 37359326 37359326 1 + G A BRCA 37359316 + 37359296 37359336 41 GGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGT GGAGAATGAGGATTTTGCGCCGGCTGCTCAAAAGATACCGT < 41bp 1 0.393783890965753 1 0.322026312351227 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359316 chr17:37359326 nonsynonymous SNV 0.381 1 31 hm5C_associated_SNPs_17589 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 37bp
chr17 37359326 37359326 1 + G A BRCA 37359319 + 37359299 37359339 41 GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAA GAATGAGGATTTTGCGCCGGCTGCTCAAAAGATACCGTGAA < 41bp 1 0.352475440338536 1 0.194762617349625 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359319 chr17:37359326 nonsynonymous SNV 0.381 1 28 hm5C_associated_SNPs_17590 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 85bp
chr17 37359326 37359326 1 + G A BRCA 37359319 + 37359299 37359339 41 GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAA GAATGAGGATTTTGCGCCGGCTGCTCAAAAGATACCGTGAA < 41bp 1 0.352475440338536 1 0.194762617349625 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359319 chr17:37359326 nonsynonymous SNV 0.381 1 28 hm5C_associated_SNPs_17590 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 37bp
chr17 37359326 37359326 1 + G A BRCA 37359322 + 37359302 37359342 41 TGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCT TGAGGATTTTGCGCCGGCTGCTCAAAAGATACCGTGAATCT < 41bp 1 0.659949992911024 1 0.356244444847107 experiment 0.680100014177953 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359322 chr17:37359326 nonsynonymous SNV 0.381 1 25 hm5C_associated_SNPs_17591 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 85bp
chr17 37359326 37359326 1 + G A BRCA 37359322 + 37359302 37359342 41 TGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCT TGAGGATTTTGCGCCGGCTGCTCAAAAGATACCGTGAATCT < 41bp 1 0.659949992911024 1 0.356244444847107 experiment 0.680100014177953 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359322 chr17:37359326 nonsynonymous SNV 0.381 1 25 hm5C_associated_SNPs_17591 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 37bp
chr17 37359326 37359326 1 + G A BRCA 37359333 + 37359313 37359353 41 CGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGA CGCCGGCTGCTCAAAAGATACCGTGAATCTAAGAAGATCGA < 41bp 1 0.179738564694412 1 0.0873980224132538 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359333 chr17:37359326 nonsynonymous SNV 0.381 1 14 hm5C_associated_SNPs_17592 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 85bp
chr17 37359326 37359326 1 + G A BRCA 37359333 + 37359313 37359353 41 CGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGA CGCCGGCTGCTCAAAAGATACCGTGAATCTAAGAAGATCGA < 41bp 1 0.179738564694412 1 0.0873980224132538 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359333 chr17:37359326 nonsynonymous SNV 0.381 1 14 hm5C_associated_SNPs_17592 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 37bp
chr17 37359326 37359326 1 + G A BRCA 37359334 + 37359314 37359354 41 GCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGAT GCCGGCTGCTCAAAAGATACCGTGAATCTAAGAAGATCGAT < 41bp 1 0.701868354383825 1 0.220239371061325 experiment 0.59626329123235 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359334 chr17:37359326 nonsynonymous SNV 0.381 1 13 hm5C_associated_SNPs_17593 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 85bp
chr17 37359326 37359326 1 + G A BRCA 37359334 + 37359314 37359354 41 GCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGAT GCCGGCTGCTCAAAAGATACCGTGAATCTAAGAAGATCGAT < 41bp 1 0.701868354383825 1 0.220239371061325 experiment 0.59626329123235 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359334 chr17:37359326 nonsynonymous SNV 0.381 1 13 hm5C_associated_SNPs_17593 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 37bp
chr1 26885381 26885381 1 + G A BRCA 26885380 + 26885360 26885400 41 GCCACCGGCCTGATGGAAGACGACGGCAAGCCTCGTGCCCC GCCACCGGCCTGATGGAAGACAACGGCAAGCCTCGTGCCCC < 41bp 1 0.719865813826636 1 0.443061232566833 experiment 0.560268372346727 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26885380 chr1:26885381 nonsynonymous SNV 0.986 1 22 hm5C_associated_SNPs_17596 0 0 1 0 2 RPS6KA1 chr1:26885298 3'AG 26885298 Downstream 84bp
chr1 26885381 26885381 1 + G A BRCA 26885380 + 26885360 26885400 41 GCCACCGGCCTGATGGAAGACGACGGCAAGCCTCGTGCCCC GCCACCGGCCTGATGGAAGACAACGGCAAGCCTCGTGCCCC < 41bp 1 0.719865813826636 1 0.443061232566833 experiment 0.560268372346727 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26885380 chr1:26885381 nonsynonymous SNV 0.986 1 22 hm5C_associated_SNPs_17596 0 0 1 0 2 RPS6KA1 chr1:26885428 5'GT 26885428 Upstream 48bp
chr11 67202530 67202530 1 + C G BRCA 67202549 + 67202529 67202569 41 TCTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG TGTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG < 41bp 1 0.741535637866872 1 0.588360667228699 experiment 0.516928724266256 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202549 chr11:67202530 nonsynonymous SNV 0.703 0 2 hm5C_associated_SNPs_17600 0 0 1 9 1 RPS6KB2 chr11:67202460 3'AG 67202460 Downstream 71bp
chr20 62311271 62311271 1 + G A BRCA 62311284 + 62311264 62311304 41 ACTCGCTGGACCAGATCATCCAGCACCTGGCAGGACGTGAG ACTCGCTAGACCAGATCATCCAGCACCTGGCAGGACGTGAG < 41bp 1 0.708349482550368 1 0.686180830001831 experiment 0.583301034899264 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62311284 chr20:62311271 synonymous SNV . 0 8 hm5C_associated_SNPs_17602 0 0 1 0 2 RTEL1 chr20:62311202 3'AG 62311202 Downstream 70bp
chr20 62311271 62311271 1 + G A BRCA 62311284 + 62311264 62311304 41 ACTCGCTGGACCAGATCATCCAGCACCTGGCAGGACGTGAG ACTCGCTAGACCAGATCATCCAGCACCTGGCAGGACGTGAG < 41bp 1 0.708349482550368 1 0.686180830001831 experiment 0.583301034899264 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62311284 chr20:62311271 synonymous SNV . 0 8 hm5C_associated_SNPs_17602 0 0 1 0 2 RTEL1 chr20:62311299 5'GT 62311299 Upstream 29bp
chr19 35530584 35530584 1 + G A BRCA 35530583 + 35530563 35530603 41 TGAAAGCAAAGAGAACTGCACGGGCGTCCAGGTGGCCGAAT TGAAAGCAAAGAGAACTGCACAGGCGTCCAGGTGGCCGAAT < 41bp 1 0.588323143038936 1 0.814554333686829 experiment 0.823353713922127 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCN1B ENSG00000105711 CDS Human protein_coding chr19:35530583 chr19:35530584 synonymous SNV . 0 22 hm5C_associated_SNPs_17617 0 0 0 0 2 SCN1B chr19:35530539 3'AG 35530539 Downstream 46bp
chr19 35530584 35530584 1 + G A BRCA 35530583 + 35530563 35530603 41 TGAAAGCAAAGAGAACTGCACGGGCGTCCAGGTGGCCGAAT TGAAAGCAAAGAGAACTGCACAGGCGTCCAGGTGGCCGAAT < 41bp 1 0.588323143038936 1 0.814554333686829 experiment 0.823353713922127 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCN1B ENSG00000105711 CDS Human protein_coding chr19:35530583 chr19:35530584 synonymous SNV . 0 22 hm5C_associated_SNPs_17617 0 0 0 0 2 SCN1B chr19:35530610 5'GT 35530610 Upstream 27bp
chr1 145115815 145115815 1 + A C BRCA 145115809 + 145115789 145115829 41 ATGCGAAGTACTTGAACATGCATTCCACTTATGCCAAACTT ATGCGAAGTACTTGAACATGCATTCCCCTTATGCCAAACTT < 41bp 1 0.0454418953872752 1 0.0498558878898621 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC22B ENSG00000223380 ncRNA_exonic Human other chr1:145115809 chr1:145115815 . . 0 27 hm5C_associated_SNPs_17618 0 0 1 0 1 SEC22B chr1:145115735 3'AG 145115735 Downstream 81bp
chr1 156142776 156142776 1 + C G BRCA 156142796 + 156142776 156142816 41 CTTGTCATGTACCTGGGAACCAGTGAGTAAAGAGTTCCGGG GTTGTCATGTACCTGGGAACCAGTGAGTAAAGAGTTCCGGG < 41bp 1 0.565749228563393 1 0.800833582878113 experiment 0.868501542873213 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156142796 chr1:156142776 nonsynonymous SNV 0.902 0 1 hm5C_associated_SNPs_17619 0 0 0 0 1 SEMA4A chr1:156142797 5'GT 156142797 Upstream 22bp
chr15 44085898 44085898 1 + C G BRCA 44085902 + 44085882 44085922 41 CAGTGCCCCATCATCTCTACCCCCAGGGACTCGGAGATCAT CAGTGCCCCATCATCTGTACCCCCAGGGACTCGGAGATCAT < 41bp 1 0.30665305247507 1 0.0751934051513672 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SERF2 ENSG00000140264 CDS Human protein_coding chr15:44085902 chr15:44085898 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_17620 0 0 1 0 1 SERF2 chr15:44085885 3'AG 44085885 Downstream 14bp
chr1 31905840 31905840 1 + T G BRCA 31905832 + 31905812 31905852 41 AGTCTGCGCTCCTCAGACCACCGGCAGGTGAACAGCCTGAT AGTCTGCGCTCCTCAGACCACCGGCAGGGGAACAGCCTGAT < 41bp 1 0.348322245161596 1 0.581021666526794 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31905832 chr1:31905840 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_17621 0 0 1 0 1 SERINC2 chr1:31905814 3'AG 31905814 Downstream 27bp
chr1 31898637 31898637 1 + G A BRCA 31898654 + 31898634 31898674 41 TTCGGCGTCGTGGGCTCCTTCCTCTTCATCCTCATCCAGCT TTCAGCGTCGTGGGCTCCTTCCTCTTCATCCTCATCCAGCT < 41bp 1 0.13142360107639 1 0.469720602035522 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31898654 chr1:31898637 nonsynonymous SNV 0.968 4 4 hm5C_associated_SNPs_17622 0 0 0 0 1 SERINC2 chr1:31898623 3'AG 31898623 Downstream 15bp
chr7 101960937 101960937 1 + G A BRCA 101960919 + 101960899 101960939 41 CCCACTGGAGTCAGGGGGCTCGGCCGACATCACCCTTCGCA CCCACTGGAGTCAGGGGGCTCGGCCGACATCACCCTTCACA < 41bp 1 0.465104945015882 1 0.593263208866119 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SH2B2 ENSG00000160999 CDS Human protein_coding chr7:101960919 chr7:101960937 nonsynonymous SNV 0.533 5 39 hm5C_associated_SNPs_17624 0 0 0 0 1 SH2B2 chr7:101960969 5'GT 101960969 Upstream 33bp
chr11 47436635 47436635 1 + C G BRCA 47436655 + 47436635 47436675 41 CCTTCACCTCTGGCGGCTTTCTCTACATCGCCTTGGTGAAC GCTTCACCTCTGGCGGCTTTCTCTACATCGCCTTGGTGAAC < 41bp 1 0.759138564533504 1 0.793690085411072 experiment 0.481722870932993 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC39A13 ENSG00000165915 CDS Human protein_coding chr11:47436655 chr11:47436635 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_17627 0 0 1 0 3 SLC39A13 chr11:47436590 3'AG 47436590 Downstream 46bp
chr11 47436635 47436635 1 + C G BRCA 47436655 + 47436635 47436675 41 CCTTCACCTCTGGCGGCTTTCTCTACATCGCCTTGGTGAAC GCTTCACCTCTGGCGGCTTTCTCTACATCGCCTTGGTGAAC < 41bp 1 0.759138564533504 1 0.793690085411072 experiment 0.481722870932993 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC39A13 ENSG00000165915 CDS Human protein_coding chr11:47436655 chr11:47436635 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_17627 0 0 1 0 3 SLC39A13 chr11:47436611 3'AG 47436611 Downstream 25bp
chr11 47436635 47436635 1 + C G BRCA 47436655 + 47436635 47436675 41 CCTTCACCTCTGGCGGCTTTCTCTACATCGCCTTGGTGAAC GCTTCACCTCTGGCGGCTTTCTCTACATCGCCTTGGTGAAC < 41bp 1 0.759138564533504 1 0.793690085411072 experiment 0.481722870932993 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC39A13 ENSG00000165915 CDS Human protein_coding chr11:47436655 chr11:47436635 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_17627 0 0 1 0 3 SLC39A13 chr11:47436710 5'GT 47436710 Upstream 76bp
chrX 135126695 135126695 1 + A T BRCA 135126705 + 135126685 135126725 41 TTCTACTGTGAACACTGAACCGGCCACATCCAGCGCCCCAA TTCTACTGTGTACACTGAACCGGCCACATCCAGCGCCCCAA < 41bp 1 0.449010486109524 1 0.699419021606445 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135126705 chrX:135126695 nonsynonymous SNV 0.997 1 11 hm5C_associated_SNPs_17631 0 0 1 0 1 SLC9A6 chrX:135126611 3'AG 135126611 Downstream 85bp
chrX 135126700 135126700 1 + T A BRCA 135126705 + 135126685 135126725 41 TTCTACTGTGAACACTGAACCGGCCACATCCAGCGCCCCAA TTCTACTGTGAACACAGAACCGGCCACATCCAGCGCCCCAA < 41bp 1 0.454159442634623 1 0.559373676776886 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135126705 chrX:135126700 synonymous SNV . 0 16 hm5C_associated_SNPs_17632 0 0 1 0 1 SLC9A6 chrX:135126611 3'AG 135126611 Downstream 90bp
chr4 146467997 146467997 1 + G C BRCA 146468006 + 146467986 146468026 41 TCCAACAATAAGAACCGTTTCTGCCTTGGGCTGCTCTCCAA TCCAACAATAACAACCGTTTCTGCCTTGGGCTGCTCTCCAA < 41bp 1 0.667404029563443 1 0.121126592159271 experiment 0.665191940873113 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146468006 chr4:146467997 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_17633 0 0 1 0 1 SMAD1 chr4:146468076 5'GT 146468076 Upstream 80bp
chr17 7478063 7478063 1 + G C BRCA 7478057 + 7478037 7478077 41 TGACCTGGGTAGAGTGGCATCTGGTTGGTGATGCCCATCTC TGACCTGGGTAGAGTGGCATCTGGTTCGTGATGCCCATCTC < 41bp 1 0.552720742606641 1 0.520241260528564 experiment 0.894558514786718 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA48 ENSG00000209582 ncRNA_exonic Human protein_coding chr17:7478057 chr17:7478063 . . 0 27 hm5C_associated_SNPs_17637 0 0 1 0 1 EIF4A1 chr17:7477996 3'AG 7477996 Downstream 68bp
chr17 7478063 7478063 1 + G C BRCA 7478071 + 7478051 7478091 41 TGGCATCTGGTTGGTGATGCCCATCTCATATCAGCCAGGGA TGGCATCTGGTTCGTGATGCCCATCTCATATCAGCCAGGGA < 41bp 1 0.0187520180800969 1 0.182006597518921 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA48 ENSG00000209582 ncRNA_exonic Human protein_coding chr17:7478071 chr17:7478063 . . 0 13 hm5C_associated_SNPs_17638 0 0 1 0 1 EIF4A1 chr17:7477996 3'AG 7477996 Downstream 68bp
chr17 7478063 7478063 1 + G C BRCA 7478077 + 7478057 7478097 41 CTGGTTGGTGATGCCCATCTCATATCAGCCAGGGACAAAGC CTGGTTCGTGATGCCCATCTCATATCAGCCAGGGACAAAGC < 41bp 1 0.0750032814161344 1 0.100854933261871 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA48 ENSG00000209582 ncRNA_exonic Human protein_coding chr17:7478077 chr17:7478063 . . 0 7 hm5C_associated_SNPs_17639 0 0 1 0 1 EIF4A1 chr17:7477996 3'AG 7477996 Downstream 68bp
chr17 46189979 46189979 1 + A G BRCA 46189985 + 46189965 46190005 41 CCGAGTGCAGAATGAGGGCTCCTGGAACTCTTATGTGGATT CCGAGTGCAGAATGGGGGCTCCTGGAACTCTTATGTGGATT < 41bp 1 0.143606718279256 1 0.217233508825302 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX11 ENSG00000002919 CDS Human protein_coding chr17:46189985 chr17:46189979 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_17659 0 0 1 0 2 SNX11 chr17:46189936 3'AG 46189936 Downstream 44bp
chr17 46189979 46189979 1 + A G BRCA 46189985 + 46189965 46190005 41 CCGAGTGCAGAATGAGGGCTCCTGGAACTCTTATGTGGATT CCGAGTGCAGAATGGGGGCTCCTGGAACTCTTATGTGGATT < 41bp 1 0.143606718279256 1 0.217233508825302 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX11 ENSG00000002919 CDS Human protein_coding chr17:46189985 chr17:46189979 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_17659 0 0 1 0 2 SNX11 chr17:46190022 5'GT 46190022 Upstream 44bp
chr11 64803030 64803030 1 + G C BRCA 64803026 + 64803006 64803046 41 TCCAGCCCTGCCCAGGAGGCCCTGGATCTCCTCTTTAACTG TCCAGCCCTGCCCAGGAGGCCCTGCATCTCCTCTTTAACTG < 41bp 1 0.0989631568225501 1 0.0672701001167297 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64803026 chr11:64803030 nonsynonymous SNV 0.833 3 25 hm5C_associated_SNPs_17660 0 0 1 0 1 SNX15 chr11:64802992 3'AG 64802992 Downstream 39bp
chr16 30736382 30736382 1 + A C BRCA 30736401 + 30736381 30736421 41 CACCTCGTTCCCCTTTTTATCTGGTAAGTTTTACTTCCTCA CCCCTCGTTCCCCTTTTTATCTGGTAAGTTTTACTTCCTCA < 41bp 1 0.437432195146538 1 0.251325130462646 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30736401 chr16:30736382 synonymous SNV . 0 2 hm5C_associated_SNPs_17665 0 0 1 0 1 SRCAP chr16:30736403 5'GT 30736403 Upstream 22bp
chr1 144014068 144014068 1 + T C BRCA 144014050 + 144014030 144014070 41 ACCTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGC ACCTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACACGC < 41bp 1 0.202889132022592 1 0.346023440361023 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014050 chr1:144014068 . . 0 39 hm5C_associated_SNPs_17666 0 0 1 0 1 FAM72C;NBPF20 chr1:144014093 5'GT 144014093 Upstream 26bp
chr1 144014068 144014068 1 + T C BRCA 144014052 + 144014032 144014072 41 CTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGCAG CTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACACGCAG < 41bp 1 0.265070604577234 1 0.5405313372612 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014052 chr1:144014068 . . 0 37 hm5C_associated_SNPs_17667 0 0 1 0 1 FAM72C;NBPF20 chr1:144014093 5'GT 144014093 Upstream 26bp
chr7 100485916 100485916 1 + C T BRCA 100485923 + 100485903 100485943 41 CACAGGAGGCCCTCCATACCCCCATGCCCCGTATGGTGCTG CACAGGAGGCCCTTCATACCCCCATGCCCCGTATGGTGCTG < 41bp 1 0.401818975097635 1 0.319004565477371 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100485923 chr7:100485916 nonsynonymous SNV 0.961 1 14 hm5C_associated_SNPs_17669 0 0 1 0 2 SRRT chr7:100485878 3'AG 100485878 Downstream 39bp
chr7 100485916 100485916 1 + C T BRCA 100485923 + 100485903 100485943 41 CACAGGAGGCCCTCCATACCCCCATGCCCCGTATGGTGCTG CACAGGAGGCCCTTCATACCCCCATGCCCCGTATGGTGCTG < 41bp 1 0.401818975097635 1 0.319004565477371 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100485923 chr7:100485916 nonsynonymous SNV 0.961 1 14 hm5C_associated_SNPs_17669 0 0 1 0 2 SRRT chr7:100486004 5'GT 100486004 Upstream 89bp
chr12 104056685 104056685 1 + G A BRCA 104056683 + 104056663 104056703 41 GAGATCACTGCCAAAAATGGCCGAATTTACACACTGACAGG GAGATCACTGCCAAAAATGGCCAAATTTACACACTGACAGG < 41bp 1 0.121947281488254 1 0.212298691272736 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient STAB2 ENSG00000136011 CDS Human protein_coding chr12:104056683 chr12:104056685 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_17670 0 0 0 0 2 STAB2 chr12:104056624 3'AG 104056624 Downstream 62bp
chr12 104056685 104056685 1 + G A BRCA 104056683 + 104056663 104056703 41 GAGATCACTGCCAAAAATGGCCGAATTTACACACTGACAGG GAGATCACTGCCAAAAATGGCCAAATTTACACACTGACAGG < 41bp 1 0.121947281488254 1 0.212298691272736 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient STAB2 ENSG00000136011 CDS Human protein_coding chr12:104056683 chr12:104056685 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_17670 0 0 0 0 2 STAB2 chr12:104056776 5'GT 104056776 Upstream 92bp
chr19 15223341 15223341 1 + A G BRCA 15223360 + 15223340 15223380 41 CACCACATCGAGGTGCTGCACTACCTGCTGCAGTCTTGGCC CGCCACATCGAGGTGCTGCACTACCTGCTGCAGTCTTGGCC < 41bp 1 0.239995293834572 1 0.109257221221924 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15223360 chr19:15223341 nonsynonymous SNV 0.997 0 2 hm5C_associated_SNPs_17671 0 0 0 0 1 SYDE1 chr19:15223382 5'GT 15223382 Upstream 42bp
chr19 15222237 15222237 1 + C G BRCA 15222222 + 15222202 15222242 41 GCGGTCTGCCTATCTGAGGACCTGTACCCCGATATCAATGT GCGGTCTGCCTATCTGAGGACCTGTACCCCGATATGAATGT < 41bp 1 0.0476358352268898 1 0.0535309314727783 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15222222 chr19:15222237 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_17672 0 0 0 0 1 SYDE1 chr19:15222250 5'GT 15222250 Upstream 14bp
chr14 64445702 64445702 1 + A C BRCA 64445696 + 64445676 64445716 41 TGGAACATTAAATATGGGAGCAGAGAATCTGTGGAATTATT TGGAACATTAAATATGGGAGCAGAGACTCTGTGGAATTATT < 41bp 1 0.0777892723834397 1 0.382619023323059 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64445696 chr14:64445702 nonsynonymous SNV 0.982 0 27 hm5C_associated_SNPs_17673 0 0 1 0 1 SYNE2 chr14:64445732 5'GT 64445732 Upstream 31bp
chr2 160031601 160031601 1 + A G BRCA 160031614 + 160031594 160031634 41 AGCCCCAACTACAGAGCATGCTGAGCCTCCGATCCTGTGTG AGCCCCAGCTACAGAGCATGCTGAGCCTCCGATCCTGTGTG < 41bp 1 0.555160634183618 1 0.28339010477066 experiment 0.889678731632763 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160031614 chr2:160031601 synonymous SNV . 0 8 hm5C_associated_SNPs_17674 0 0 0 0 1 TANC1 chr2:160031695 5'GT 160031695 Upstream 95bp
chr7 27833979 27833979 1 + A T BRCA 27833973 + 27833953 27833993 41 TAATGTCTTCACAAAGAAAACGGGGAATCAGCAGAAAGTGA TAATGTCTTCACAAAGAAAACGGGGATTCAGCAGAAAGTGA < 41bp 1 0.736962639612207 1 0.716164946556091 experiment 0.526074720775587 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27833973 chr7:27833979 nonsynonymous SNV 0.963 1 27 hm5C_associated_SNPs_17675 0 0 1 0 2 TAX1BP1 chr7:27833942 3'AG 27833942 Downstream 38bp
chr7 27833979 27833979 1 + A T BRCA 27833973 + 27833953 27833993 41 TAATGTCTTCACAAAGAAAACGGGGAATCAGCAGAAAGTGA TAATGTCTTCACAAAGAAAACGGGGATTCAGCAGAAAGTGA < 41bp 1 0.736962639612207 1 0.716164946556091 experiment 0.526074720775587 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27833973 chr7:27833979 nonsynonymous SNV 0.963 1 27 hm5C_associated_SNPs_17675 0 0 1 0 2 TAX1BP1 chr7:27834065 5'GT 27834065 Upstream 87bp
chr4 26622298 26622298 1 + G A BRCA 26622308 + 26622288 26622328 41 TGGTATACATGAGGAAAGCACAGGTTGGCTATTGTTCAATT TGGTATACATAAGGAAAGCACAGGTTGGCTATTGTTCAATT < 41bp 1 0.443091572817978 1 0.349998891353607 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D19 ENSG00000109680 CDS Human protein_coding chr4:26622308 chr4:26622298 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_17676 0 0 1 0 2 TBC1D19 chr4:26622235 3'AG 26622235 Downstream 64bp
chr4 26622298 26622298 1 + G A BRCA 26622308 + 26622288 26622328 41 TGGTATACATGAGGAAAGCACAGGTTGGCTATTGTTCAATT TGGTATACATAAGGAAAGCACAGGTTGGCTATTGTTCAATT < 41bp 1 0.443091572817978 1 0.349998891353607 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D19 ENSG00000109680 CDS Human protein_coding chr4:26622308 chr4:26622298 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_17676 0 0 1 0 2 TBC1D19 chr4:26622310 5'GT 26622310 Upstream 13bp
chr6 37280745 37280745 1 + G A BRCA 37280749 + 37280729 37280769 41 TCTCAAGACATGCTGCGAAGCATTGAGGCTGACAGCTTTTG TCTCAAGACATGCTGCAAAGCATTGAGGCTGACAGCTTTTG < 41bp 1 0.18759011474429 1 0.0741725862026215 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37280749 chr6:37280745 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_17677 0 0 1 0 2 TBC1D22B chr6:37280694 3'AG 37280694 Downstream 52bp
chr6 37280745 37280745 1 + G A BRCA 37280749 + 37280729 37280769 41 TCTCAAGACATGCTGCGAAGCATTGAGGCTGACAGCTTTTG TCTCAAGACATGCTGCAAAGCATTGAGGCTGACAGCTTTTG < 41bp 1 0.18759011474429 1 0.0741725862026215 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37280749 chr6:37280745 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_17677 0 0 1 0 2 TBC1D22B chr6:37280800 5'GT 37280800 Upstream 56bp
chr12 64878170 64878170 1 + C G BRCA 64878177 + 64878157 64878197 41 GGCGACGCTTAGTCTTAGAACCTGGAAGGCTGGCACAACAT GGCGACGCTTAGTGTTAGAACCTGGAAGGCTGGCACAACAT < 41bp 1 0.393279782762969 1 0.466838121414185 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBK1 ENSG00000183735 CDS Human protein_coding chr12:64878177 chr12:64878170 synonymous SNV . 0 14 hm5C_associated_SNPs_17678 0 0 1 0 1 TBK1 chr12:64878083 3'AG 64878083 Downstream 88bp
chr15 57554331 57554331 1 + A C BRCA 57554318 + 57554298 57554338 41 ACTCATCGGGAAGACTCTGTCAGTCTCAATGGCAATCATTC ACTCATCGGGAAGACTCTGTCAGTCTCAATGGCCATCATTC < 41bp 1 0.25543291538326 1 0.374713838100433 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554318 chr15:57554331 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_17679 0 0 1 0 2 TCF12 chr15:57554292 3'AG 57554292 Downstream 40bp
chr15 57554331 57554331 1 + A C BRCA 57554318 + 57554298 57554338 41 ACTCATCGGGAAGACTCTGTCAGTCTCAATGGCAATCATTC ACTCATCGGGAAGACTCTGTCAGTCTCAATGGCCATCATTC < 41bp 1 0.25543291538326 1 0.374713838100433 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554318 chr15:57554331 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_17679 0 0 1 0 2 TCF12 chr15:57554406 5'GT 57554406 Upstream 76bp
chr15 57554331 57554331 1 + A C BRCA 57554338 + 57554318 57554358 41 CAGTCTCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCA CAGTCTCAATGGCCATCATTCAGTCCTGTCTAGTACAGTCA < 41bp 1 0.163693058635508 1 0.306455194950104 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554338 chr15:57554331 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_17680 0 0 1 0 2 TCF12 chr15:57554292 3'AG 57554292 Downstream 40bp
chr15 57554331 57554331 1 + A C BRCA 57554338 + 57554318 57554358 41 CAGTCTCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCA CAGTCTCAATGGCCATCATTCAGTCCTGTCTAGTACAGTCA < 41bp 1 0.163693058635508 1 0.306455194950104 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554338 chr15:57554331 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_17680 0 0 1 0 2 TCF12 chr15:57554406 5'GT 57554406 Upstream 76bp
chr15 57554331 57554331 1 + A C BRCA 57554343 + 57554323 57554363 41 TCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCACTACT TCAATGGCCATCATTCAGTCCTGTCTAGTACAGTCACTACT < 41bp 1 0.109144589215324 1 0.0318277478218079 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554343 chr15:57554331 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_17681 0 0 1 0 2 TCF12 chr15:57554292 3'AG 57554292 Downstream 40bp
chr15 57554331 57554331 1 + A C BRCA 57554343 + 57554323 57554363 41 TCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCACTACT TCAATGGCCATCATTCAGTCCTGTCTAGTACAGTCACTACT < 41bp 1 0.109144589215324 1 0.0318277478218079 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554343 chr15:57554331 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_17681 0 0 1 0 2 TCF12 chr15:57554406 5'GT 57554406 Upstream 76bp
chr12 124074976 124074976 1 + G A BRCA 124074965 + 124074945 124074985 41 GTAAAGCACGAACAGGAATACATGGAAGTCCGGGAGAGAAT GTAAAGCACGAACAGGAATACATGGAAGTCCAGGAGAGAAT < 41bp 1 0.61481941653655 1 0.286285936832428 experiment 0.770361166926899 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED2 ENSG00000086598 CDS Human protein_coding chr12:124074965 chr12:124074976 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_17684 0 0 1 0 2 TMED2 chr12:124074889 3'AG 124074889 Downstream 88bp
chr12 124074976 124074976 1 + G A BRCA 124074965 + 124074945 124074985 41 GTAAAGCACGAACAGGAATACATGGAAGTCCGGGAGAGAAT GTAAAGCACGAACAGGAATACATGGAAGTCCAGGAGAGAAT < 41bp 1 0.61481941653655 1 0.286285936832428 experiment 0.770361166926899 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED2 ENSG00000086598 CDS Human protein_coding chr12:124074965 chr12:124074976 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_17684 0 0 1 0 2 TMED2 chr12:124074996 5'GT 124074996 Upstream 21bp
chr7 12269421 12269421 1 + T G BRCA 12269401 + 12269381 12269421 41 AAACAGTTATTGGAAAGGCACGCTTAAACAACATAACCATT AAACAGTTATTGGAAAGGCACGCTTAAACAACATAACCATG < 41bp 1 0.231780576608742 1 0.0449942052364349 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM106B ENSG00000106460 CDS Human protein_coding chr7:12269401 chr7:12269421 nonsynonymous SNV 0.974 0 41 hm5C_associated_SNPs_17685 0 0 1 0 1 TMEM106B chr7:12269445 5'GT 12269445 Upstream 25bp
chr6 44274744 44274744 1 - A G BRCA 44274726 - 44274706 44274746 41 CGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC CGCCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC < 41bp 1 0.467392721656051 1 0.81921660900116 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human protein_coding chr6:44274726 chr6:44274744 nonsynonymous SNV 0.985 1 3 hm5C_associated_SNPs_17686 0 0 1 0 2 AARS2 chr6:44274660 5'GT 44274660 Upstream 85bp
chr6 44274744 44274744 1 - A G BRCA 44274726 - 44274706 44274746 41 CGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC CGCCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC < 41bp 1 0.467392721656051 1 0.81921660900116 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human other chr6:44274726 chr6:44274744 nonsynonymous SNV 0.985 1 3 hm5C_associated_SNPs_17686 0 0 1 0 2 AARS2 chr6:44274768 3'AG 44274768 Downstream 25bp
chr5 72187661 72187661 1 + C T BRCA 72187646 + 72187626 72187666 41 ATTGTAAATAGGAATATATTCAGATGCTAATGCCTCCACTG ATTGTAAATAGGAATATATTCAGATGCTAATGCCTTCACTG < 41bp 1 0.535886665608629 1 0.831857264041901 experiment 0.928226668782743 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187646 chr5:72187661 nonsynonymous SNV 0.999 2 36 hm5C_associated_SNPs_17688 0 0 1 0 2 TNPO1 chr5:72187637 3'AG 72187637 Downstream 25bp
chr5 72187661 72187661 1 + C T BRCA 72187646 + 72187626 72187666 41 ATTGTAAATAGGAATATATTCAGATGCTAATGCCTCCACTG ATTGTAAATAGGAATATATTCAGATGCTAATGCCTTCACTG < 41bp 1 0.535886665608629 1 0.831857264041901 experiment 0.928226668782743 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187646 chr5:72187661 nonsynonymous SNV 0.999 2 36 hm5C_associated_SNPs_17688 0 0 1 0 2 TNPO1 chr5:72187723 5'GT 72187723 Upstream 63bp
chr5 72187661 72187661 1 + C T BRCA 72187652 + 72187632 72187672 41 AATAGGAATATATTCAGATGCTAATGCCTCCACTGATCCAG AATAGGAATATATTCAGATGCTAATGCCTTCACTGATCCAG < 41bp 1 0.198897584690302 1 0.0844723284244537 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187652 chr5:72187661 nonsynonymous SNV 0.999 2 30 hm5C_associated_SNPs_17689 0 0 1 0 2 TNPO1 chr5:72187637 3'AG 72187637 Downstream 25bp
chr5 72187661 72187661 1 + C T BRCA 72187652 + 72187632 72187672 41 AATAGGAATATATTCAGATGCTAATGCCTCCACTGATCCAG AATAGGAATATATTCAGATGCTAATGCCTTCACTGATCCAG < 41bp 1 0.198897584690302 1 0.0844723284244537 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187652 chr5:72187661 nonsynonymous SNV 0.999 2 30 hm5C_associated_SNPs_17689 0 0 1 0 2 TNPO1 chr5:72187723 5'GT 72187723 Upstream 63bp
chr5 72187661 72187661 1 + C T BRCA 72187658 + 72187638 72187678 41 AATATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGG AATATATTCAGATGCTAATGCCTTCACTGATCCAGAAATGG < 41bp 1 0.00652781788151669 1 0.0898264944553375 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187658 chr5:72187661 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_17690 0 0 1 0 2 TNPO1 chr5:72187637 3'AG 72187637 Downstream 25bp
chr5 72187661 72187661 1 + C T BRCA 72187658 + 72187638 72187678 41 AATATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGG AATATATTCAGATGCTAATGCCTTCACTGATCCAGAAATGG < 41bp 1 0.00652781788151669 1 0.0898264944553375 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187658 chr5:72187661 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_17690 0 0 1 0 2 TNPO1 chr5:72187723 5'GT 72187723 Upstream 63bp
chr5 72187661 72187661 1 + C T BRCA 72187659 + 72187639 72187679 41 ATATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGA ATATATTCAGATGCTAATGCCTTCACTGATCCAGAAATGGA < 41bp 1 0.170706313920258 1 0.323081076145172 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187659 chr5:72187661 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_17691 0 0 1 0 2 TNPO1 chr5:72187637 3'AG 72187637 Downstream 25bp
chr5 72187661 72187661 1 + C T BRCA 72187659 + 72187639 72187679 41 ATATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGA ATATATTCAGATGCTAATGCCTTCACTGATCCAGAAATGGA < 41bp 1 0.170706313920258 1 0.323081076145172 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187659 chr5:72187661 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_17691 0 0 1 0 2 TNPO1 chr5:72187723 5'GT 72187723 Upstream 63bp
chr5 72187661 72187661 1 + C T BRCA 72187662 + 72187642 72187682 41 TATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAACA TATTCAGATGCTAATGCCTTCACTGATCCAGAAATGGAACA < 41bp 1 0.18623096505163 1 0.158769845962524 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187662 chr5:72187661 nonsynonymous SNV 0.999 2 20 hm5C_associated_SNPs_17692 0 0 1 0 2 TNPO1 chr5:72187637 3'AG 72187637 Downstream 25bp
chr5 72187661 72187661 1 + C T BRCA 72187662 + 72187642 72187682 41 TATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAACA TATTCAGATGCTAATGCCTTCACTGATCCAGAAATGGAACA < 41bp 1 0.18623096505163 1 0.158769845962524 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187662 chr5:72187661 nonsynonymous SNV 0.999 2 20 hm5C_associated_SNPs_17692 0 0 1 0 2 TNPO1 chr5:72187723 5'GT 72187723 Upstream 63bp
chr5 72187661 72187661 1 + C T BRCA 72187664 + 72187644 72187684 41 TTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAACATG TTCAGATGCTAATGCCTTCACTGATCCAGAAATGGAACATG < 41bp 1 0.299199347766053 1 0.1149962246418 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187664 chr5:72187661 nonsynonymous SNV 0.999 2 18 hm5C_associated_SNPs_17693 0 0 1 0 2 TNPO1 chr5:72187637 3'AG 72187637 Downstream 25bp
chr5 72187661 72187661 1 + C T BRCA 72187664 + 72187644 72187684 41 TTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAACATG TTCAGATGCTAATGCCTTCACTGATCCAGAAATGGAACATG < 41bp 1 0.299199347766053 1 0.1149962246418 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187664 chr5:72187661 nonsynonymous SNV 0.999 2 18 hm5C_associated_SNPs_17693 0 0 1 0 2 TNPO1 chr5:72187723 5'GT 72187723 Upstream 63bp
chr5 72187661 72187661 1 + C T BRCA 72187669 + 72187649 72187689 41 ATGCTAATGCCTCCACTGATCCAGAAATGGAACATGTTAAA ATGCTAATGCCTTCACTGATCCAGAAATGGAACATGTTAAA < 41bp 1 0.484940792448874 1 0.797165870666504 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187669 chr5:72187661 nonsynonymous SNV 0.999 2 13 hm5C_associated_SNPs_17694 0 0 1 0 2 TNPO1 chr5:72187637 3'AG 72187637 Downstream 25bp
chr5 72187661 72187661 1 + C T BRCA 72187669 + 72187649 72187689 41 ATGCTAATGCCTCCACTGATCCAGAAATGGAACATGTTAAA ATGCTAATGCCTTCACTGATCCAGAAATGGAACATGTTAAA < 41bp 1 0.484940792448874 1 0.797165870666504 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187669 chr5:72187661 nonsynonymous SNV 0.999 2 13 hm5C_associated_SNPs_17694 0 0 1 0 2 TNPO1 chr5:72187723 5'GT 72187723 Upstream 63bp
chr5 72187661 72187661 1 + C T BRCA 72187670 + 72187650 72187690 41 TGCTAATGCCTCCACTGATCCAGAAATGGAACATGTTAAAG TGCTAATGCCTTCACTGATCCAGAAATGGAACATGTTAAAG < 41bp 1 0.552527214994347 1 0.344975888729095 experiment 0.894945570011305 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187670 chr5:72187661 nonsynonymous SNV 0.999 2 12 hm5C_associated_SNPs_17695 0 0 1 0 2 TNPO1 chr5:72187637 3'AG 72187637 Downstream 25bp
chr5 72187661 72187661 1 + C T BRCA 72187670 + 72187650 72187690 41 TGCTAATGCCTCCACTGATCCAGAAATGGAACATGTTAAAG TGCTAATGCCTTCACTGATCCAGAAATGGAACATGTTAAAG < 41bp 1 0.552527214994347 1 0.344975888729095 experiment 0.894945570011305 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187670 chr5:72187661 nonsynonymous SNV 0.999 2 12 hm5C_associated_SNPs_17695 0 0 1 0 2 TNPO1 chr5:72187723 5'GT 72187723 Upstream 63bp
chr5 72187661 72187661 1 + C T BRCA 72187681 + 72187661 72187701 41 CCACTGATCCAGAAATGGAACATGTTAAAGGATGAAGATAA TCACTGATCCAGAAATGGAACATGTTAAAGGATGAAGATAA < 41bp 1 0.190759733972646 1 0.165381729602814 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187681 chr5:72187661 nonsynonymous SNV 0.999 2 1 hm5C_associated_SNPs_17696 0 0 1 0 2 TNPO1 chr5:72187637 3'AG 72187637 Downstream 25bp
chr5 72187661 72187661 1 + C T BRCA 72187681 + 72187661 72187701 41 CCACTGATCCAGAAATGGAACATGTTAAAGGATGAAGATAA TCACTGATCCAGAAATGGAACATGTTAAAGGATGAAGATAA < 41bp 1 0.190759733972646 1 0.165381729602814 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187681 chr5:72187661 nonsynonymous SNV 0.999 2 1 hm5C_associated_SNPs_17696 0 0 1 0 2 TNPO1 chr5:72187723 5'GT 72187723 Upstream 63bp
chr20 42680113 42680113 1 + G A BRCA 42680122 + 42680102 42680142 41 TCCCCATCACCGCCGGGGAGCAAGTCAGCGACCCCCTCTCC TCCCCATCACCACCGGGGAGCAAGTCAGCGACCCCCTCTCC < 41bp 1 0.375871653579165 1 0.144389510154724 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42680122 chr20:42680113 synonymous SNV . 0 12 hm5C_associated_SNPs_17697 0 0 0 0 1 TOX2 chr20:42680185 5'GT 42680185 Upstream 73bp
chr14 21963403 21963403 1 + C T BRCA 21963397 + 21963377 21963417 41 TCTTCTCACAGGTTGAGTCTCCTTCTCAGATGGATGTTGAA TCTTCTCACAGGTTGAGTCTCCTTCTTAGATGGATGTTGAA < 41bp 1 0.0291654046251917 1 0.0503973066806793 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOX4 ENSG00000092203 CDS Human protein_coding chr14:21963397 chr14:21963403 stopgain 1.000 0 27 hm5C_associated_SNPs_17698 0 0 1 0 1 TOX4 chr14:21963388 3'AG 21963388 Downstream 16bp
chr14 21963403 21963403 1 + C T BRCA 21963398 + 21963378 21963418 41 CTTCTCACAGGTTGAGTCTCCTTCTCAGATGGATGTTGAAT CTTCTCACAGGTTGAGTCTCCTTCTTAGATGGATGTTGAAT < 41bp 1 0.124210416324829 1 0.0162611305713654 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOX4 ENSG00000092203 CDS Human protein_coding chr14:21963398 chr14:21963403 stopgain 1.000 0 26 hm5C_associated_SNPs_17699 0 0 1 0 1 TOX4 chr14:21963388 3'AG 21963388 Downstream 16bp
chr5 14498736 14498736 1 + C A BRCA 14498746 + 14498726 14498766 41 CGTCGGCCAGCCTGAGGGTCCTAGGTAAGCACCGTGCAACG CGTCGGCCAGACTGAGGGTCCTAGGTAAGCACCGTGCAACG < 41bp 1 0.412255612835644 1 0.242122203111649 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14498746 chr5:14498736 nonsynonymous SNV 0.936 3 11 hm5C_associated_SNPs_17702 0 0 1 0 1 TRIO chr5:14498749 5'GT 14498749 Upstream 14bp
chr7 98528431 98528431 1 + T A BRCA 98528424 + 98528404 98528444 41 AGACATTCCTGAAAGCACTTCTCTTTGTCATGATGGACTTA AGACATTCCTGAAAGCACTTCTCTTTGACATGATGGACTTA < 41bp 1 0.0472045729483243 1 0.20312237739563 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98528424 chr7:98528431 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_17703 0 0 1 0 1 TRRAP chr7:98528453 5'GT 98528453 Upstream 23bp
chr7 98528431 98528431 1 + T A BRCA 98528441 + 98528421 98528461 41 CTTCTCTTTGTCATGATGGACTTAACTGGAGAGGTAGGTGA CTTCTCTTTGACATGATGGACTTAACTGGAGAGGTAGGTGA < 41bp 1 0.105074679925999 1 0.0781107544898987 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98528441 chr7:98528431 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_17704 0 0 1 0 1 TRRAP chr7:98528453 5'GT 98528453 Upstream 23bp
chr3 12531408 12531408 1 + T C BRCA 12531390 + 12531370 12531410 41 CAATCCCTTTTGGTCAGGACCATGGTCCTCTGAAAGAATTC CAATCCCTTTTGGTCAGGACCATGGTCCTCTGAAAGAACTC < 41bp 1 0.35506274392437 1 0.272526681423187 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12531390 chr3:12531408 nonsynonymous SNV 0.012 1 39 hm5C_associated_SNPs_17705 0 0 1 0 1 TSEN2 chr3:12531488 5'GT 12531488 Upstream 81bp
chr2 113277954 113277954 1 + A G BRCA 113277937 + 113277917 113277957 41 TTCCAGCTCTTCGGCTTTGACTTCATGGTCGATGAGGAGCT TTCCAGCTCTTCGGCTTTGACTTCATGGTCGATGAGGGGCT < 41bp 1 0.797626738162286 1 0.842231452465057 experiment 0.404746523675428 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113277937 chr2:113277954 nonsynonymous SNV 0.998 0 38 hm5C_associated_SNPs_17706 0 0 1 0 2 TTL chr2:113277859 3'AG 113277859 Downstream 96bp
chr2 113277954 113277954 1 + A G BRCA 113277937 + 113277917 113277957 41 TTCCAGCTCTTCGGCTTTGACTTCATGGTCGATGAGGAGCT TTCCAGCTCTTCGGCTTTGACTTCATGGTCGATGAGGGGCT < 41bp 1 0.797626738162286 1 0.842231452465057 experiment 0.404746523675428 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113277937 chr2:113277954 nonsynonymous SNV 0.998 0 38 hm5C_associated_SNPs_17706 0 0 1 0 2 TTL chr2:113278002 5'GT 113278002 Upstream 49bp
chr7 157041140 157041140 1 + G A BRCA 157041160 + 157041140 157041180 41 GTGGACATTCACCACCTCGCCTCCCTAGACCCTGAGGTGTA ATGGACATTCACCACCTCGCCTCCCTAGACCCTGAGGTGTA < 41bp 1 0.326404341018224 1 0.452379286289215 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE3C ENSG00000009335 CDS Human protein_coding chr7:157041160 chr7:157041140 nonsynonymous SNV 0.749 4 1 hm5C_associated_SNPs_17708 0 0 1 0 1 UBE3C chr7:157041062 3'AG 157041062 Downstream 79bp
chr1 10231364 10231364 1 + G A BRCA 10231351 + 10231331 10231371 41 GATATTTACTTACAGCTGGACTGTGCTCGGTTCGCGAAAGC GATATTTACTTACAGCTGGACTGTGCTCGGTTCACGAAAGC < 41bp 1 0.202238087062774 1 0.171253085136414 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10231351 chr1:10231364 nonsynonymous SNV 0.963 4 34 hm5C_associated_SNPs_17709 0 0 1 0 1 UBE4B chr1:10231387 5'GT 10231387 Upstream 24bp
chr1 229783409 229783409 1 + C G BRCA 229783428 + 229783408 229783448 41 TCCCTTTGGACCATCTGAAGCCGCTGGAGTATGGAAGCGTC TGCCTTTGGACCATCTGAAGCCGCTGGAGTATGGAAGCGTC < 41bp 1 0.272107591595119 1 0.319845080375671 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control URB2 ENSG00000135763 CDS Human protein_coding chr1:229783428 chr1:229783409 synonymous SNV . 0 2 hm5C_associated_SNPs_17710 0 0 1 0 1 URB2 chr1:229783499 5'GT 229783499 Upstream 91bp
chr3 179478911 179478911 1 + G C BRCA 179478903 + 179478883 179478923 41 CCTGTTGTGCTCTGTAGCATCAGACATCGATGAGTCATCAG CCTGTTGTGCTCTGTAGCATCAGACATCCATGAGTCATCAG < 41bp 1 0.313181971732647 1 0.644624948501587 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control USP13 ENSG00000058056 CDS Human protein_coding chr3:179478903 chr3:179478911 nonsynonymous SNV 0.990 4 29 hm5C_associated_SNPs_17711 0 0 1 0 1 USP13 chr3:179478900 3'AG 179478900 Downstream 12bp
chr12 6961446 6961446 1 + G A BRCA 6961445 + 6961425 6961465 41 GACGAGTGCGCCTTCTCCTTCGACACGCCGGTAAGCCCATT GACGAGTGCGCCTTCTCCTTCAACACGCCGGTAAGCCCATT < 41bp 1 0.604140043960961 1 0.444234579801559 experiment 0.791719912078078 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control USP5 ENSG00000111667 CDS Human protein_coding chr12:6961445 chr12:6961446 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_17712 0 0 1 0 1 USP5 chr12:6961454 5'GT 6961454 Upstream 9bp
chr3 184577834 184577834 1 + A G BRCA 184577844 + 184577824 184577864 41 CACCTATACTATGACCTCATCAACTTTACCGTGAGTATTAT CACCTATACTGTGACCTCATCAACTTTACCGTGAGTATTAT < 41bp 1 0.118540302766031 1 0.342830181121826 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VPS8 ENSG00000156931 CDS Human protein_coding chr3:184577844 chr3:184577834 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_17716 0 0 1 0 2 VPS8 chr3:184577773 3'AG 184577773 Downstream 62bp
chr3 184577834 184577834 1 + A G BRCA 184577844 + 184577824 184577864 41 CACCTATACTATGACCTCATCAACTTTACCGTGAGTATTAT CACCTATACTGTGACCTCATCAACTTTACCGTGAGTATTAT < 41bp 1 0.118540302766031 1 0.342830181121826 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VPS8 ENSG00000156931 CDS Human protein_coding chr3:184577844 chr3:184577834 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_17716 0 0 1 0 2 VPS8 chr3:184577853 5'GT 184577853 Upstream 20bp
chr4 1941401 1941401 1 + G A BRCA 1941384 + 1941364 1941404 41 CCAAAATTATTTTACAGCAACGAAAAATCTGTCTGATGCAT CCAAAATTATTTTACAGCAACGAAAAATCTGTCTGATACAT < 41bp 1 0.249228622617241 1 0.309852719306946 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD2 ENSG00000109685 CDS Human protein_coding chr4:1941384 chr4:1941401 nonsynonymous SNV 0.992 4 38 hm5C_associated_SNPs_17717 0 0 1 0 1 NSD2 chr4:1941381 3'AG 1941381 Downstream 21bp
chr17 7606072 7606072 1 + C A BRCA 7606087 + 7606067 7606107 41 GAGCTCCTGTGCTGGGATCTCCGGCAGTCTGGTTACCCACT GAGCTACTGTGCTGGGATCTCCGGCAGTCTGGTTACCCACT < 41bp 1 0.485516440378356 1 0.845692038536072 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7606087 chr17:7606072 synonymous SNV . 0 6 hm5C_associated_SNPs_17718 0 0 1 0 2 WRAP53 chr17:7606061 3'AG 7606061 Downstream 12bp
chr17 7606072 7606072 1 + C A BRCA 7606087 + 7606067 7606107 41 GAGCTCCTGTGCTGGGATCTCCGGCAGTCTGGTTACCCACT GAGCTACTGTGCTGGGATCTCCGGCAGTCTGGTTACCCACT < 41bp 1 0.485516440378356 1 0.845692038536072 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7606087 chr17:7606072 synonymous SNV . 0 6 hm5C_associated_SNPs_17718 0 0 1 0 2 WRAP53 chr17:7606164 5'GT 7606164 Upstream 93bp
chr22 42018039 42018039 1 + G C BRCA 42018044 + 42018024 42018064 41 TCATATTACAAAACCGAGGGCGATGAAGAAGCAGAGGAAGA TCATATTACAAAACCCAGGGCGATGAAGAAGCAGAGGAAGA < 41bp 1 0.113535298778469 1 0.382210254669189 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42018044 chr22:42018039 nonsynonymous SNV 0.982 1 16 hm5C_associated_SNPs_17723 0 0 1 0 2 XRCC6 chr22:42017994 3'AG 42017994 Downstream 46bp
chr22 42018039 42018039 1 + G C BRCA 42018044 + 42018024 42018064 41 TCATATTACAAAACCGAGGGCGATGAAGAAGCAGAGGAAGA TCATATTACAAAACCCAGGGCGATGAAGAAGCAGAGGAAGA < 41bp 1 0.113535298778469 1 0.382210254669189 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42018044 chr22:42018039 nonsynonymous SNV 0.982 1 16 hm5C_associated_SNPs_17723 0 0 1 0 2 XRCC6 chr22:42018090 5'GT 42018090 Upstream 52bp
chrX 67741223 67741223 1 + A G BRCA 67741231 + 67741211 67741251 41 CAGAATGCTGCAAAGAGACTCTGCAGATAGTGAAAAAGATG CAGAATGCTGCAGAGAGACTCTGCAGATAGTGAAAAAGATG < 41bp 1 0.761212444876626 1 0.521591186523438 experiment 0.477575110246748 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YIPF6 ENSG00000181704 CDS Human protein_coding chrX:67741231 chrX:67741223 synonymous SNV . 0 13 hm5C_associated_SNPs_17724 0 0 1 0 1 YIPF6 chrX:67741214 3'AG 67741214 Downstream 10bp
chr14 75247126 75247126 1 + G C BRCA 75247109 + 75247089 75247129 41 TGTCCTCTTTTATCTTTAGTCTGAGGACCCAGAAGAAGATG TGTCCTCTTTTATCTTTAGTCTGAGGACCCAGAAGAACATG < 41bp 1 0.494642830983916 1 0.755407094955444 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control YLPM1 ENSG00000119596 CDS Human protein_coding chr14:75247109 chr14:75247126 nonsynonymous SNV 0.996 1 38 hm5C_associated_SNPs_17725 0 0 1 0 1 YLPM1 chr14:75247108 3'AG 75247108 Downstream 19bp
chr1 22835081 22835081 1 + C G BRCA 22835072 + 22835052 22835092 41 TGGTTCAGGTGGTTTCAATTCTCTGATATCAGCAGTTCTAG TGGTTCAGGTGGTTTCAATTCTCTGATATGAGCAGTTCTAG < 41bp 1 0.416906677923151 1 0.621993958950043 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22835072 chr1:22835081 stopgain 0.994 0 30 hm5C_associated_SNPs_17728 0 0 1 0 1 ZBTB40 chr1:22835023 3'AG 22835023 Downstream 59bp
chr18 74625749 74625749 1 + C T BRCA 74625764 + 74625744 74625784 41 TGAAGCAGCATGTGCGGTCGCACACCGGGGAAAAGCCCTAC TGAAGTAGCATGTGCGGTCGCACACCGGGGAAAAGCCCTAC < 41bp 1 0.337567642600825 1 0.0767413973808289 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74625764 chr18:74625749 stopgain 0.981 1 6 hm5C_associated_SNPs_17734 0 0 0 0 1 ZNF236 chr18:74625703 3'AG 74625703 Downstream 47bp
chr18 74631946 74631946 1 + C T BRCA 74631929 + 74631909 74631949 41 TCAGTGAGCTGAGGGACAAGCAGGCGGAGCTGCAGGACGAG TCAGTGAGCTGAGGGACAAGCAGGCGGAGCTGCAGGATGAG < 41bp 1 0.737946603130231 1 0.892688035964966 experiment 0.524106793739539 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74631929 chr18:74631946 synonymous SNV . 0 38 hm5C_associated_SNPs_17735 0 0 1 0 1 ZNF236 chr18:74632014 5'GT 74632014 Upstream 69bp
chr18 74631946 74631946 1 + C T BRCA 74631960 + 74631940 74631980 41 GCAGGACGAGCCCAAGCACGCCAACTGCTGCACATACTGCC GCAGGATGAGCCCAAGCACGCCAACTGCTGCACATACTGCC < 41bp 1 0.0925980680327459 1 0.319972723722458 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74631960 chr18:74631946 synonymous SNV . 0 7 hm5C_associated_SNPs_17736 0 0 1 0 1 ZNF236 chr18:74632014 5'GT 74632014 Upstream 69bp
chr1 151261988 151261988 1 + A G BRCA 151262002 + 151261982 151262022 41 TTGCCCAAAAAAGGACCATGCTGGAACATCTCAAGGTACAG TTGCCCGAAAAAGGACCATGCTGGAACATCTCAAGGTACAG < 41bp 1 0.664557652015613 1 0.379396080970764 experiment 0.670884695968773 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF687 ENSG00000143373 CDS Human protein_coding chr1:151262002 chr1:151261988 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_17741 0 0 1 0 1 ZNF687 chr1:151262016 5'GT 151262016 Upstream 29bp
chrX 47774342 47774342 1 + G C BRCA 47774348 + 47774328 47774368 41 AAATTTGGAATTAAGCCTTCCCAGAGGAGAATTTCTGGGAA AAATTTGGAATTAACCCTTCCCAGAGGAGAATTTCTGGGAA < 41bp 1 0.247264451606426 1 0.681777596473694 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF81 ENSG00000197779 CDS Human protein_coding chrX:47774348 chrX:47774342 nonsynonymous SNV 0.908 0 15 hm5C_associated_SNPs_17742 0 0 1 0 1 ZNF81 chrX:47774323 3'AG 47774323 Downstream 20bp
chr1 230379165 230379165 1 + G T CESC 230379152 + 230379132 230379172 41 AATGAGCACTGGCTGGAGCCCCTCCTGGAAAGGGTGGCGGA AATGAGCACTGGCTGGAGCCCCTCCTGGAAAGGTTGGCGGA < 41bp 1 0.0827361813750168 1 0.112753301858902 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230379152 chr1:230379165 nonsynonymous SNV 0.909 3 34 hm5C_associated_SNPs_17744 0 0 1 0 1 GALNT2 chr1:230379173 5'GT 230379173 Upstream 9bp
chr16 1556304 1556304 1 + C T CESC 1556292 + 1556272 1556312 41 AGCAGATTCAACTCCGTGGCCGGCCACTTCTTCTTCCCCCT AGCAGATTCAACTCCGTGGCCGGCCACTTCTTTTTCCCCCT < 41bp 1 0.32461454370765 1 0.350699543952942 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1556292 chr16:1556304 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_17746 0 0 0 0 1 TELO2 chr16:1556330 5'GT 1556330 Upstream 27bp
chr6 52943677 52943677 1 + G A CESC 52943668 + 52943648 52943688 41 AGATTACTTATACCCGGTCTCCAGATGGTGATGGCGTTGGA AGATTACTTATACCCGGTCTCCAGATGGTAATGGCGTTGGA < 41bp 1 0.618395572902304 1 0.650678038597107 experiment 0.763208854195393 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXO9 ENSG00000112146 CDS Human protein_coding chr6:52943668 chr6:52943677 nonsynonymous SNV 0.998 2 30 hm5C_associated_SNPs_17747 0 0 1 0 2 FBXO9 chr6:52943597 3'AG 52943597 Downstream 81bp
chr6 52943677 52943677 1 + G A CESC 52943668 + 52943648 52943688 41 AGATTACTTATACCCGGTCTCCAGATGGTGATGGCGTTGGA AGATTACTTATACCCGGTCTCCAGATGGTAATGGCGTTGGA < 41bp 1 0.618395572902304 1 0.650678038597107 experiment 0.763208854195393 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXO9 ENSG00000112146 CDS Human protein_coding chr6:52943668 chr6:52943677 nonsynonymous SNV 0.998 2 30 hm5C_associated_SNPs_17747 0 0 1 0 2 FBXO9 chr6:52943696 5'GT 52943696 Upstream 20bp
chr5 131930625 131930625 1 + G T CESC 131930610 + 131930590 131930630 41 AAAATCATATAAATAATGAACTAAAAAGAAAGGAAGAGCAG AAAATCATATAAATAATGAACTAAAAAGAAAGGAATAGCAG < 41bp 1 0.378402924683178 1 0.331418365240097 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131930610 chr5:131930625 stopgain 0.998 1 36 hm5C_associated_SNPs_17748 0 0 1 0 1 RAD50 chr5:131930561 3'AG 131930561 Downstream 65bp
chr5 131930621 131930621 1 + G T CESC 131930610 + 131930590 131930630 41 AAAATCATATAAATAATGAACTAAAAAGAAAGGAAGAGCAG AAAATCATATAAATAATGAACTAAAAAGAAATGAAGAGCAG < 41bp 1 0.423520661176127 1 0.366712749004364 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131930610 chr5:131930621 nonsynonymous SNV 0.991 4 32 hm5C_associated_SNPs_17749 0 0 1 0 1 RAD50 chr5:131930561 3'AG 131930561 Downstream 61bp
chr20 18143049 18143049 1 + C T CESC 18143056 + 18143036 18143076 41 AAGGCGATGGAGTCATAGACCCAGGGATGGAGTACGTCCCA AAGGCGATGGAGTTATAGACCCAGGGATGGAGTACGTCCCA < 41bp 1 0.707837530172689 1 0.708945512771606 experiment 0.584324939654621 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control KAT14 ENSG00000149474 CDS Human protein_coding chr20:18143056 chr20:18143049 synonymous SNV . 0 14 hm5C_associated_SNPs_17750 0 0 0 0 1 KAT14 chr20:18143021 3'AG 18143021 Downstream 29bp
chr17 33953832 33953832 1 + G C CESC 33953838 + 33953818 33953858 41 CAGTATGTCGCCCTGAGGAACATCAACTTAATTGTCCAGAA CAGTATGTCGCCCTCAGGAACATCAACTTAATTGTCCAGAA < 41bp 1 0.375431246651671 1 0.0836286544799805 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP2B1 ENSG00000006125 CDS Human protein_coding chr17:33953838 chr17:33953832 synonymous SNV . 0 15 hm5C_associated_SNPs_17751 0 0 1 0 1 AP2B1 chr17:33953861 5'GT 33953861 Upstream 30bp
chr12 105558478 105558478 1 + G A CESC 105558486 + 105558466 105558506 41 CAGAGCAGACAAGACTGCGGCTGAAGAAAACCAAGAAAAGA CAGAGCAGACAAAACTGCGGCTGAAGAAAACCAAGAAAAGA < 41bp 1 0.385823387248451 1 0.503418028354645 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105558486 chr12:105558478 synonymous SNV . 0 13 hm5C_associated_SNPs_17752 0 0 1 0 2 WASHC4 chr12:105558419 3'AG 105558419 Downstream 60bp
chr12 105558478 105558478 1 + G A CESC 105558486 + 105558466 105558506 41 CAGAGCAGACAAGACTGCGGCTGAAGAAAACCAAGAAAAGA CAGAGCAGACAAAACTGCGGCTGAAGAAAACCAAGAAAAGA < 41bp 1 0.385823387248451 1 0.503418028354645 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105558486 chr12:105558478 synonymous SNV . 0 13 hm5C_associated_SNPs_17752 0 0 1 0 2 WASHC4 chr12:105558518 5'GT 105558518 Upstream 41bp
chr17 40714701 40714701 1 + C G CESC 40714704 + 40714684 40714724 41 TGGCCTCCCTAGCCCCTCGCCTGGCCTCCATCCTGACCTCG TGGCCTCCCTAGCCCCTGGCCTGGCCTCCATCCTGACCTCG < 41bp 1 0.53842918573091 1 0.220811426639557 experiment 0.923141628538179 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COASY ENSG00000068120 CDS Human protein_coding chr17:40714704 chr17:40714701 nonsynonymous SNV 0.902 4 18 hm5C_associated_SNPs_17753 0 0 1 0 1 COASY chr17:40714630 3'AG 40714630 Downstream 72bp
chrX 107909764 107909764 1 + G A CESC 107909782 + 107909762 107909802 41 GCGAAAAAGGCAAACCCGGTCAAGATGGTATTCCTGGACCA GCAAAAAAGGCAAACCCGGTCAAGATGGTATTCCTGGACCA < 41bp 1 0.744776597986412 1 0.769044041633606 experiment 0.510446804027176 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107909782 chrX:107909764 nonsynonymous SNV 0.988 3 3 hm5C_associated_SNPs_17757 0 0 1 0 2 COL4A5 chrX:107909726 3'AG 107909726 Downstream 39bp
chrX 107909764 107909764 1 + G A CESC 107909782 + 107909762 107909802 41 GCGAAAAAGGCAAACCCGGTCAAGATGGTATTCCTGGACCA GCAAAAAAGGCAAACCCGGTCAAGATGGTATTCCTGGACCA < 41bp 1 0.744776597986412 1 0.769044041633606 experiment 0.510446804027176 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107909782 chrX:107909764 nonsynonymous SNV 0.988 3 3 hm5C_associated_SNPs_17757 0 0 1 0 2 COL4A5 chrX:107909824 5'GT 107909824 Upstream 61bp
chr6 44199824 44199824 1 + C T CESC 44199838 + 44199818 44199858 41 CAGCATCGCAGGCAGCAGCACCTGGGGTGAGGATGCCACAG CAGCATTGCAGGCAGCAGCACCTGGGGTGAGGATGCCACAG < 41bp 1 0.312268309731337 1 0.539102137088776 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44199838 chr6:44199824 synonymous SNV . 0 7 hm5C_associated_SNPs_17760 0 0 1 0 2 SLC29A1 chr6:44199735 3'AG 44199735 Downstream 90bp
chr6 44199824 44199824 1 + C T CESC 44199838 + 44199818 44199858 41 CAGCATCGCAGGCAGCAGCACCTGGGGTGAGGATGCCACAG CAGCATTGCAGGCAGCAGCACCTGGGGTGAGGATGCCACAG < 41bp 1 0.312268309731337 1 0.539102137088776 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44199838 chr6:44199824 synonymous SNV . 0 7 hm5C_associated_SNPs_17760 0 0 1 0 2 SLC29A1 chr6:44199843 5'GT 44199843 Upstream 20bp
chr10 7745454 7745454 1 + C T CESC 7745438 + 7745418 7745458 41 TTTCATCTGCTTCTTTCTTTCTGAAGTATCAGGCTTCGAAA TTTCATCTGCTTCTTTCTTTCTGAAGTATCAGGCTTTGAAA < 41bp 1 0.750201155024756 1 0.779416918754578 experiment 0.499597689950488 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7745438 chr10:7745454 synonymous SNV . 0 37 hm5C_associated_SNPs_17761 0 0 1 0 1 ITIH2 chr10:7745481 5'GT 7745481 Upstream 28bp
chr9 35560823 35560823 1 + C T CESC 35560834 + 35560814 35560854 41 CGAAAAGCCCAGCGGGAGGCCCGGCCCACAAATAGGTGAGA CGAAAAGCCTAGCGGGAGGCCCGGCCCACAAATAGGTGAGA < 41bp 1 0.0904340853711051 1 0.496177911758423 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RUSC2 ENSG00000198853 CDS Human protein_coding chr9:35560834 chr9:35560823 stopgain 0.976 0 10 hm5C_associated_SNPs_17762 0 0 1 0 1 RUSC2 chr9:35560848 5'GT 35560848 Upstream 26bp
chr19 50906837 50906837 1 + C T CESC 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CGTACCTCATCTCTTGGGCCCAGACCCTCAAGGTGAGGGCT < 41bp 1 0.0789186862141494 1 0.193814843893051 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906837 nonsynonymous SNV 0.997 3 15 hm5C_associated_SNPs_17763 0 0 1 0 2 POLD1 chr19:50906750 3'AG 50906750 Downstream 88bp
chr19 50906837 50906837 1 + C T CESC 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CGTACCTCATCTCTTGGGCCCAGACCCTCAAGGTGAGGGCT < 41bp 1 0.0789186862141494 1 0.193814843893051 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906837 nonsynonymous SNV 0.997 3 15 hm5C_associated_SNPs_17763 0 0 1 0 2 POLD1 chr19:50906854 5'GT 50906854 Upstream 18bp
chr19 50906837 50906837 1 + C T CESC 50906851 + 50906831 50906871 41 ATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCTGGGCAGGT ATCTCTTGGGCCCAGACCCTCAAGGTGAGGGCTGGGCAGGT < 41bp 1 0.649283968574148 1 0.893548727035522 experiment 0.701432062851704 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906851 chr19:50906837 nonsynonymous SNV 0.997 3 7 hm5C_associated_SNPs_17764 0 0 1 0 2 POLD1 chr19:50906750 3'AG 50906750 Downstream 88bp
chr19 50906837 50906837 1 + C T CESC 50906851 + 50906831 50906871 41 ATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCTGGGCAGGT ATCTCTTGGGCCCAGACCCTCAAGGTGAGGGCTGGGCAGGT < 41bp 1 0.649283968574148 1 0.893548727035522 experiment 0.701432062851704 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906851 chr19:50906837 nonsynonymous SNV 0.997 3 7 hm5C_associated_SNPs_17764 0 0 1 0 2 POLD1 chr19:50906854 5'GT 50906854 Upstream 18bp
chr19 45974502 45974502 1 + A C CESC 45974494 + 45974474 45974514 41 AGCGAAGGGTGCGCCGGGAACGAAATAAACTAGCAGCAGCT AGCGAAGGGTGCGCCGGGAACGAAATAACCTAGCAGCAGCT < 41bp 1 0.730862716574487 1 0.457133680582047 experiment 0.538274566851025 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45974494 chr19:45974502 nonsynonymous SNV 0.968 4 29 hm5C_associated_SNPs_17766 0 0 0 0 2 FOSB chr19:45974452 3'AG 45974452 Downstream 51bp
chr19 45974502 45974502 1 + A C CESC 45974494 + 45974474 45974514 41 AGCGAAGGGTGCGCCGGGAACGAAATAAACTAGCAGCAGCT AGCGAAGGGTGCGCCGGGAACGAAATAACCTAGCAGCAGCT < 41bp 1 0.730862716574487 1 0.457133680582047 experiment 0.538274566851025 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45974494 chr19:45974502 nonsynonymous SNV 0.968 4 29 hm5C_associated_SNPs_17766 0 0 0 0 2 FOSB chr19:45974559 5'GT 45974559 Upstream 58bp
chr11 994200 994200 1 + C T CESC 994214 + 994194 994234 41 TGTGGACGTGAACGGGGGTCCTGAGCCTGCCCCAGCCAGTA TGTGGATGTGAACGGGGGTCCTGAGCCTGCCCCAGCCAGTA < 41bp 1 0.461003914276729 1 0.145416498184204 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:994214 chr11:994200 synonymous SNV . 0 7 hm5C_associated_SNPs_17769 0 0 1 0 1 AP2A2 chr11:994245 5'GT 994245 Upstream 46bp
chr19 45648494 45648494 1 + C T CESC 45648504 + 45648484 45648524 41 GCCTGGACCTCGACCGTGAACCCAAGAAAGAGGCGGTGAGC GCCTGGACCTTGACCGTGAACCCAAGAAAGAGGCGGTGAGC < 41bp 1 0.482403399113258 1 0.0843452513217926 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP1R37 ENSG00000104866 CDS Human protein_coding chr19:45648504 chr19:45648494 synonymous SNV . 0 11 hm5C_associated_SNPs_17770 0 0 1 0 1 PPP1R37 chr19:45648518 5'GT 45648518 Upstream 25bp
chr16 22337573 22337573 1 + G A CESC 22337560 + 22337540 22337580 41 TCGGACCGCATGCTACAGGACACGGTGCTGGCCGCCGGTTG TCGGACCGCATGCTACAGGACACGGTGCTGGCCACCGGTTG < 41bp 1 0.716152101320332 1 0.212366431951523 experiment 0.567695797359336 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22337560 chr16:22337573 nonsynonymous SNV 0.745 0 34 hm5C_associated_SNPs_17776 0 0 1 0 1 POLR3E chr16:22337599 5'GT 22337599 Upstream 27bp
chr11 4142936 4142936 1 + G T CESC 4142924 + 4142904 4142944 41 AGAACACAGGAAAGGAAGAGCAGCGTGCCAGAGATCTTTTC AGAACACAGGAAAGGAAGAGCAGCGTGCCAGATATCTTTTC < 41bp 1 0.616148641120294 1 0.492204993963242 experiment 0.767702717759413 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RRM1 ENSG00000167325 CDS Human protein_coding chr11:4142924 chr11:4142936 nonsynonymous SNV 0.988 4 33 hm5C_associated_SNPs_17777 0 0 1 0 1 RRM1 chr11:4142995 5'GT 4142995 Upstream 60bp
chr19 1053488 1053488 1 + G A CESC 1053481 + 1053461 1053501 41 AGAGCTAGACACGCGGCTGGCGGAGCTGAGGCTCACTGGCT AGAGCTAGACACGCGGCTGGCGGAGCTAAGGCTCACTGGCT < 41bp 1 0.470228817099923 1 0.895077466964722 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1053481 chr19:1053488 synonymous SNV . 0 28 hm5C_associated_SNPs_17779 0 0 0 0 1 ABCA7 chr19:1053530 5'GT 1053530 Upstream 43bp
chr10 122664255 122664255 1 + C T CESC 122664258 + 122664238 122664278 41 AGTCACTACTGTCACCTCGTCAGGCCCCTCTCAGAGCACCA AGTCACTACTGTCACCTTGTCAGGCCCCTCTCAGAGCACCA < 41bp 1 0.430956913988995 1 0.799070715904236 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122664258 chr10:122664255 nonsynonymous SNV 0.986 5 18 hm5C_associated_SNPs_17781 0 0 1 0 2 WDR11 chr10:122664158 3'AG 122664158 Downstream 98bp
chr10 122664255 122664255 1 + C T CESC 122664258 + 122664238 122664278 41 AGTCACTACTGTCACCTCGTCAGGCCCCTCTCAGAGCACCA AGTCACTACTGTCACCTTGTCAGGCCCCTCTCAGAGCACCA < 41bp 1 0.430956913988995 1 0.799070715904236 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122664258 chr10:122664255 nonsynonymous SNV 0.986 5 18 hm5C_associated_SNPs_17781 0 0 1 0 2 WDR11 chr10:122664323 5'GT 122664323 Upstream 69bp
chr15 63866331 63866331 1 + G A CESC 63866342 + 63866322 63866362 41 CAGAATCTAGAAAGTTTGATCCATTCCTAGGTAAGATATAT CAGAATCTAAAAAGTTTGATCCATTCCTAGGTAAGATATAT < 41bp 1 0.0137638385852621 1 0.0702128410339355 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP3 ENSG00000140455 CDS Human protein_coding chr15:63866342 chr15:63866331 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_17784 0 0 1 4 2 USP3 chr15:63866245 3'AG 63866245 Downstream 87bp
chr15 63866331 63866331 1 + G A CESC 63866342 + 63866322 63866362 41 CAGAATCTAGAAAGTTTGATCCATTCCTAGGTAAGATATAT CAGAATCTAAAAAGTTTGATCCATTCCTAGGTAAGATATAT < 41bp 1 0.0137638385852621 1 0.0702128410339355 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP3 ENSG00000140455 CDS Human protein_coding chr15:63866342 chr15:63866331 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_17784 0 0 1 4 2 USP3 chr15:63866351 5'GT 63866351 Upstream 21bp
chr9 72659589 72659589 1 + C T CESC 72659575 + 72659555 72659595 41 GAGCACTTGCGGCTTTGACTCCGTGTTGGCCTCTCTGCCGT GAGCACTTGCGGCTTTGACTCCGTGTTGGCCTCTTTGCCGT < 41bp 1 0.59190137325615 1 0.258632600307465 experiment 0.8161972534877 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659575 chr9:72659589 synonymous SNV . 0 35 hm5C_associated_SNPs_17785 0 0 0 1 2 MAMDC2 chr9:72659500 3'AG 72659500 Downstream 90bp
chr9 72659589 72659589 1 + C T CESC 72659575 + 72659555 72659595 41 GAGCACTTGCGGCTTTGACTCCGTGTTGGCCTCTCTGCCGT GAGCACTTGCGGCTTTGACTCCGTGTTGGCCTCTTTGCCGT < 41bp 1 0.59190137325615 1 0.258632600307465 experiment 0.8161972534877 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659575 chr9:72659589 synonymous SNV . 0 35 hm5C_associated_SNPs_17785 0 0 0 1 2 MAMDC2 chr9:72659613 5'GT 72659613 Upstream 25bp
chr9 72659589 72659589 1 + C T CESC 72659576 + 72659556 72659596 41 AGCACTTGCGGCTTTGACTCCGTGTTGGCCTCTCTGCCGTG AGCACTTGCGGCTTTGACTCCGTGTTGGCCTCTTTGCCGTG < 41bp 1 0.473975280080178 1 0.499132186174393 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659576 chr9:72659589 synonymous SNV . 0 34 hm5C_associated_SNPs_17786 0 0 0 1 2 MAMDC2 chr9:72659500 3'AG 72659500 Downstream 90bp
chr9 72659589 72659589 1 + C T CESC 72659576 + 72659556 72659596 41 AGCACTTGCGGCTTTGACTCCGTGTTGGCCTCTCTGCCGTG AGCACTTGCGGCTTTGACTCCGTGTTGGCCTCTTTGCCGTG < 41bp 1 0.473975280080178 1 0.499132186174393 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659576 chr9:72659589 synonymous SNV . 0 34 hm5C_associated_SNPs_17786 0 0 0 1 2 MAMDC2 chr9:72659613 5'GT 72659613 Upstream 25bp
chr9 72659589 72659589 1 + C T CESC 72659584 + 72659564 72659604 41 CGGCTTTGACTCCGTGTTGGCCTCTCTGCCGTGGATTTTAA CGGCTTTGACTCCGTGTTGGCCTCTTTGCCGTGGATTTTAA < 41bp 1 0.110592063027651 1 0.0463207364082336 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659584 chr9:72659589 synonymous SNV . 0 26 hm5C_associated_SNPs_17787 0 0 0 1 2 MAMDC2 chr9:72659500 3'AG 72659500 Downstream 90bp
chr9 72659589 72659589 1 + C T CESC 72659584 + 72659564 72659604 41 CGGCTTTGACTCCGTGTTGGCCTCTCTGCCGTGGATTTTAA CGGCTTTGACTCCGTGTTGGCCTCTTTGCCGTGGATTTTAA < 41bp 1 0.110592063027651 1 0.0463207364082336 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659584 chr9:72659589 synonymous SNV . 0 26 hm5C_associated_SNPs_17787 0 0 0 1 2 MAMDC2 chr9:72659613 5'GT 72659613 Upstream 25bp
chr9 72659589 72659589 1 + C T CESC 72659585 + 72659565 72659605 41 GGCTTTGACTCCGTGTTGGCCTCTCTGCCGTGGATTTTAAA GGCTTTGACTCCGTGTTGGCCTCTTTGCCGTGGATTTTAAA < 41bp 1 0.198593183158869 1 0.0890517830848694 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659585 chr9:72659589 synonymous SNV . 0 25 hm5C_associated_SNPs_17788 0 0 0 1 2 MAMDC2 chr9:72659500 3'AG 72659500 Downstream 90bp
chr9 72659589 72659589 1 + C T CESC 72659585 + 72659565 72659605 41 GGCTTTGACTCCGTGTTGGCCTCTCTGCCGTGGATTTTAAA GGCTTTGACTCCGTGTTGGCCTCTTTGCCGTGGATTTTAAA < 41bp 1 0.198593183158869 1 0.0890517830848694 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659585 chr9:72659589 synonymous SNV . 0 25 hm5C_associated_SNPs_17788 0 0 0 1 2 MAMDC2 chr9:72659613 5'GT 72659613 Upstream 25bp
chr9 72659589 72659589 1 + C T CESC 72659587 + 72659567 72659607 41 CTTTGACTCCGTGTTGGCCTCTCTGCCGTGGATTTTAAATG CTTTGACTCCGTGTTGGCCTCTTTGCCGTGGATTTTAAATG < 41bp 1 0.189662388555003 1 0.209403842687607 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659587 chr9:72659589 synonymous SNV . 0 23 hm5C_associated_SNPs_17789 0 0 0 1 2 MAMDC2 chr9:72659500 3'AG 72659500 Downstream 90bp
chr9 72659589 72659589 1 + C T CESC 72659587 + 72659567 72659607 41 CTTTGACTCCGTGTTGGCCTCTCTGCCGTGGATTTTAAATG CTTTGACTCCGTGTTGGCCTCTTTGCCGTGGATTTTAAATG < 41bp 1 0.189662388555003 1 0.209403842687607 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659587 chr9:72659589 synonymous SNV . 0 23 hm5C_associated_SNPs_17789 0 0 0 1 2 MAMDC2 chr9:72659613 5'GT 72659613 Upstream 25bp
chr3 119205772 119205772 1 + C T CESC 119205764 + 119205744 119205784 41 GAATACACCAAAAACCAGGCCTGGAAATCTATGAAAGTAAT GAATACACCAAAAACCAGGCCTGGAAATTTATGAAAGTAAT < 41bp 1 0.616016686871919 1 0.155491352081299 experiment 0.767966626256162 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119205764 chr3:119205772 nonsynonymous SNV 0.999 2 29 hm5C_associated_SNPs_17791 0 0 1 4 2 POGLUT1 chr3:119205680 3'AG 119205680 Downstream 93bp
chr3 119205772 119205772 1 + C T CESC 119205764 + 119205744 119205784 41 GAATACACCAAAAACCAGGCCTGGAAATCTATGAAAGTAAT GAATACACCAAAAACCAGGCCTGGAAATTTATGAAAGTAAT < 41bp 1 0.616016686871919 1 0.155491352081299 experiment 0.767966626256162 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119205764 chr3:119205772 nonsynonymous SNV 0.999 2 29 hm5C_associated_SNPs_17791 0 0 1 4 2 POGLUT1 chr3:119205779 5'GT 119205779 Upstream 8bp
chr20 42680134 42680134 1 + C G CESC 42680122 + 42680102 42680142 41 TCCCCATCACCGCCGGGGAGCAAGTCAGCGACCCCCTCTCC TCCCCATCACCGCCGGGGAGCAAGTCAGCGACGCCCTCTCC < 41bp 1 0.435604586006256 1 0.172458380460739 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42680122 chr20:42680134 synonymous SNV . 0 33 hm5C_associated_SNPs_17792 0 0 0 0 1 TOX2 chr20:42680185 5'GT 42680185 Upstream 52bp
chr9 117063996 117063996 1 + C T CESC 117063993 + 117063973 117064013 41 CCCCAGAGGGCGGCCCGGCCCCCCGGTAGGTAACTGAGTGC CCCCAGAGGGCGGCCCGGCCCCCTGGTAGGTAACTGAGTGC < 41bp 1 0.232605782449874 1 0.165649235248566 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117063993 chr9:117063996 nonsynonymous SNV 0.819 4 24 hm5C_associated_SNPs_17793 0 0 1 0 1 COL27A1 chr9:117063997 5'GT 117063997 Upstream 2bp
chr7 56066732 56066732 1 + C G CESC 56066725 + 56066705 56066745 41 ACTTATTCAGGAAATGGAATCCAGAATCATGATCCCACTGA ACTTATTCAGGAAATGGAATCCAGAATGATGATCCCACTGA < 41bp 1 0.748401657755544 1 0.581377565860748 experiment 0.503196684488912 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NIPSNAP2 ENSG00000146729 CDS Human protein_coding chr7:56066725 chr7:56066732 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_17794 0 0 1 0 1 NIPSNAP2 chr7:56066701 3'AG 56066701 Downstream 32bp
chr5 65118654 65118654 1 + C T CESC 65118652 + 65118632 65118672 41 AATCCTGAAACCTGGGGGATCTCTGGACGGCATGGACATGC AATCCTGAAACCTGGGGGATCTTTGGACGGCATGGACATGC < 41bp 1 0.167533898536821 1 0.0930141806602478 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NLN ENSG00000123213 CDS Human protein_coding chr5:65118652 chr5:65118654 synonymous SNV . 0 23 hm5C_associated_SNPs_17797 0 0 1 0 1 NLN chr5:65118609 3'AG 65118609 Downstream 46bp
chr3 124160810 124160810 1 + C T CESC 124160800 + 124160780 124160820 41 TGTCTTTCGCAGGCCTGCACCCTGGCTCGGCGGAATGCTGA TGTCTTTCGCAGGCCTGCACCCTGGCTCGGTGGAATGCTGA < 41bp 1 0.0984347431661136 1 0.377857446670532 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient KALRN ENSG00000160145 CDS Human protein_coding chr3:124160800 chr3:124160810 nonsynonymous SNV 0.922 4 31 hm5C_associated_SNPs_17798 0 0 0 0 2 KALRN chr3:124160792 3'AG 124160792 Downstream 19bp
chr3 124160810 124160810 1 + C T CESC 124160800 + 124160780 124160820 41 TGTCTTTCGCAGGCCTGCACCCTGGCTCGGCGGAATGCTGA TGTCTTTCGCAGGCCTGCACCCTGGCTCGGTGGAATGCTGA < 41bp 1 0.0984347431661136 1 0.377857446670532 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient KALRN ENSG00000160145 CDS Human protein_coding chr3:124160800 chr3:124160810 nonsynonymous SNV 0.922 4 31 hm5C_associated_SNPs_17798 0 0 0 0 2 KALRN chr3:124160906 5'GT 124160906 Upstream 97bp
chr2 192141714 192141714 1 + C T CESC 192141711 + 192141691 192141731 41 GAACCTCTCAATGAGGAGACCTTCATCAACAACCTCAAGAA GAACCTCTCAATGAGGAGACCTTTATCAACAACCTCAAGAA < 41bp 1 0.195933100478737 1 0.0713870823383331 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYO1B ENSG00000128641 CDS Human protein_coding chr2:192141711 chr2:192141714 synonymous SNV . 0 24 hm5C_associated_SNPs_17799 0 0 1 0 1 MYO1B chr2:192141756 5'GT 192141756 Upstream 43bp
chr7 36445877 36445877 1 + C T CESC 36445868 + 36445848 36445888 41 CCCTCCCAGACCTCTGCTTTCAAATGCCTCGGCAACTCCAG CCCTCCCAGACCTCTGCTTTCAAATGCCTTGGCAACTCCAG < 41bp 1 0.522400196818853 1 0.626441895961761 experiment 0.955199606362294 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36445868 chr7:36445877 nonsynonymous SNV 0.122 1 30 hm5C_associated_SNPs_17800 0 0 1 0 1 ANLN chr7:36445790 3'AG 36445790 Downstream 88bp
chr1 10328298 10328298 1 + G A CESC 10328306 + 10328286 10328326 41 AAACACGATAATGAGACCAACCTTTCCACTGAGAAGGTAGG AAACACGATAATAAGACCAACCTTTCCACTGAGAAGGTAGG < 41bp 1 0.00212102289131071 1 0.0355300307273865 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10328306 chr1:10328298 nonsynonymous SNV 0.924 2 13 hm5C_associated_SNPs_17804 0 0 1 0 2 KIF1B chr1:10328210 3'AG 10328210 Downstream 89bp
chr1 10328298 10328298 1 + G A CESC 10328306 + 10328286 10328326 41 AAACACGATAATGAGACCAACCTTTCCACTGAGAAGGTAGG AAACACGATAATAAGACCAACCTTTCCACTGAGAAGGTAGG < 41bp 1 0.00212102289131071 1 0.0355300307273865 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10328306 chr1:10328298 nonsynonymous SNV 0.924 2 13 hm5C_associated_SNPs_17804 0 0 1 0 2 KIF1B chr1:10328321 5'GT 10328321 Upstream 24bp
chr17 7814210 7814210 1 + G A CESC 7814192 + 7814172 7814212 41 CGCCGGGTCCCTACGCTACACCTCCGGGGTACGGGGCGGCC CGCCGGGTCCCTACGCTACACCTCCGGGGTACGGGGCGACC < 41bp 1 0.096604941989213 1 0.0246374011039734 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7814192 chr17:7814210 nonsynonymous SNV 0.979 2 39 hm5C_associated_SNPs_17805 0 0 1 0 2 CHD3 chr17:7814165 3'AG 7814165 Downstream 46bp
chr17 7814210 7814210 1 + G A CESC 7814192 + 7814172 7814212 41 CGCCGGGTCCCTACGCTACACCTCCGGGGTACGGGGCGGCC CGCCGGGTCCCTACGCTACACCTCCGGGGTACGGGGCGACC < 41bp 1 0.096604941989213 1 0.0246374011039734 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7814192 chr17:7814210 nonsynonymous SNV 0.979 2 39 hm5C_associated_SNPs_17805 0 0 1 0 2 CHD3 chr17:7814291 5'GT 7814291 Upstream 82bp
chr17 7814210 7814210 1 + G A CESC 7814203 + 7814183 7814223 41 TACGCTACACCTCCGGGGTACGGGGCGGCCTTCAGCGCCGC TACGCTACACCTCCGGGGTACGGGGCGACCTTCAGCGCCGC < 41bp 1 0.79206829444051 1 0.739974617958069 experiment 0.41586341111898 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7814203 chr17:7814210 nonsynonymous SNV 0.979 2 28 hm5C_associated_SNPs_17806 0 0 1 0 2 CHD3 chr17:7814165 3'AG 7814165 Downstream 46bp
chr17 7814210 7814210 1 + G A CESC 7814203 + 7814183 7814223 41 TACGCTACACCTCCGGGGTACGGGGCGGCCTTCAGCGCCGC TACGCTACACCTCCGGGGTACGGGGCGACCTTCAGCGCCGC < 41bp 1 0.79206829444051 1 0.739974617958069 experiment 0.41586341111898 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7814203 chr17:7814210 nonsynonymous SNV 0.979 2 28 hm5C_associated_SNPs_17806 0 0 1 0 2 CHD3 chr17:7814291 5'GT 7814291 Upstream 82bp
chr12 57483098 57483098 1 + G A CESC 57483091 + 57483071 57483111 41 CCCCCACAGCCGAGCAGCCGCCGGGCGGAGGGGACAGCGCC CCCCCACAGCCGAGCAGCCGCCGGGCGAAGGGGACAGCGCC < 41bp 1 0.634847386547938 1 0.85571962594986 experiment 0.730305226904125 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NAB2 ENSG00000166886 CDS Human protein_coding chr12:57483091 chr12:57483098 nonsynonymous SNV 0.999 2 28 hm5C_associated_SNPs_17807 0 0 0 0 1 NAB2 chr12:57483137 5'GT 57483137 Upstream 40bp
chr20 30526994 30526994 1 + G A CESC 30526975 + 30526955 30526995 41 AGGGAGAAGCGAGTCGGGGGCTTTGACCTCATGTGGAATGA AGGGAGAAGCGAGTCGGGGGCTTTGACCTCATGTGGAATAA < 41bp 1 0.22905612756501 1 0.0856161415576935 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30526975 chr20:30526994 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_17808 0 0 0 0 1 TTLL9 chr20:30526945 3'AG 30526945 Downstream 50bp
chr19 42364896 42364896 1 + C G CESC 42364907 + 42364887 42364927 41 GTCAGAGCTCTGGCAGCCTTCCTCAAAAAGTGAGTTTGGGG GTCAGAGCTGTGGCAGCCTTCCTCAAAAAGTGAGTTTGGGG < 41bp 1 0.230331632812829 1 0.55123108625412 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42364907 chr19:42364896 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_17809 0 0 1 0 2 RPS19 chr19:42364845 3'AG 42364845 Downstream 52bp
chr19 42364896 42364896 1 + C G CESC 42364907 + 42364887 42364927 41 GTCAGAGCTCTGGCAGCCTTCCTCAAAAAGTGAGTTTGGGG GTCAGAGCTGTGGCAGCCTTCCTCAAAAAGTGAGTTTGGGG < 41bp 1 0.230331632812829 1 0.55123108625412 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42364907 chr19:42364896 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_17809 0 0 1 0 2 RPS19 chr19:42364915 5'GT 42364915 Upstream 20bp
chr3 155628636 155628636 1 + C T CESC 155628644 + 155628624 155628664 41 CTTGAGTGTATTCGAGAGATCAAAGAGAGAGTAGGCACGTC CTTGAGTGTATTTGAGAGATCAAAGAGAGAGTAGGCACGTC < 41bp 1 0.527225276021903 1 0.352770686149597 experiment 0.945549447956195 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GMPS ENSG00000163655 CDS Human protein_coding chr3:155628644 chr3:155628636 stopgain 0.995 0 13 hm5C_associated_SNPs_17810 0 0 1 0 1 GMPS chr3:155628674 5'GT 155628674 Upstream 39bp
chrX 64956743 64956743 1 + A G CESC 64956736 + 64956716 64956756 41 TTGAACGGGAGAAGGAGGAGCTGATGGAGAGGCTGAAGCAG TTGAACGGGAGAAGGAGGAGCTGATGGGGAGGCTGAAGCAG < 41bp 1 0.406361188132271 1 0.319242388010025 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956736 chrX:64956743 nonsynonymous SNV 0.995 2 28 hm5C_associated_SNPs_17811 0 0 1 0 2 MSN chrX:64956657 3'AG 64956657 Downstream 87bp
chrX 64956743 64956743 1 + A G CESC 64956736 + 64956716 64956756 41 TTGAACGGGAGAAGGAGGAGCTGATGGAGAGGCTGAAGCAG TTGAACGGGAGAAGGAGGAGCTGATGGGGAGGCTGAAGCAG < 41bp 1 0.406361188132271 1 0.319242388010025 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956736 chrX:64956743 nonsynonymous SNV 0.995 2 28 hm5C_associated_SNPs_17811 0 0 1 0 2 MSN chrX:64956787 5'GT 64956787 Upstream 45bp
chr1 161132177 161132177 1 + G T CESC 161132159 + 161132139 161132179 41 AAGAGGTGCCTGGAGGAGGCCGAGCCCAAGAGCTCACTGAA AAGAGGTGCCTGGAGGAGGCCGAGCCCAAGAGCTCACTTAA < 41bp 1 0.463593064240004 1 0.742682039737701 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161132159 chr1:161132177 stopgain 0.987 0 39 hm5C_associated_SNPs_17813 0 0 1 0 1 USP21 chr1:161132180 5'GT 161132180 Upstream 4bp
chr21 45546808 45546808 1 + C T CESC 45546824 + 45546804 45546844 41 AAACCTGAGATCAGGGTGACCTCACTCCGCTTCTCTCCCAC AAACTTGAGATCAGGGTGACCTCACTCCGCTTCTCTCCCAC < 41bp 1 0.387454958317884 1 0.239395052194595 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45546824 chr21:45546808 nonsynonymous SNV 0.994 2 5 hm5C_associated_SNPs_17815 0 0 1 0 2 PWP2 chr21:45546781 3'AG 45546781 Downstream 28bp
chr21 45546808 45546808 1 + C T CESC 45546824 + 45546804 45546844 41 AAACCTGAGATCAGGGTGACCTCACTCCGCTTCTCTCCCAC AAACTTGAGATCAGGGTGACCTCACTCCGCTTCTCTCCCAC < 41bp 1 0.387454958317884 1 0.239395052194595 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45546824 chr21:45546808 nonsynonymous SNV 0.994 2 5 hm5C_associated_SNPs_17815 0 0 1 0 2 PWP2 chr21:45546846 5'GT 45546846 Upstream 39bp
chr9 131846984 131846984 1 + C T CESC 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTTAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT < 41bp 1 0.527116705208785 1 0.604248285293579 experiment 0.945766589582429 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131846984 synonymous SNV . 0 6 hm5C_associated_SNPs_17816 0 0 1 0 2 DOLPP1 chr9:131846947 3'AG 131846947 Downstream 38bp
chr9 131846984 131846984 1 + C T CESC 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTTAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT < 41bp 1 0.527116705208785 1 0.604248285293579 experiment 0.945766589582429 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131846984 synonymous SNV . 0 6 hm5C_associated_SNPs_17816 0 0 1 0 2 DOLPP1 chr9:131847047 5'GT 131847047 Upstream 64bp
chr1 32502584 32502584 1 + G A CESC 32502589 + 32502569 32502609 41 TACCTGAACCCTCTCGTGGACGTGGGGTGCCAGTGAGAGGC TACCTGAACCCTCTCATGGACGTGGGGTGCCAGTGAGAGGC < 41bp 1 0.77382637424248 1 0.493462830781937 experiment 0.45234725151504 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502589 chr1:32502584 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_17817 0 0 1 0 2 KHDRBS1 chr1:32502511 3'AG 32502511 Downstream 74bp
chr1 32502584 32502584 1 + G A CESC 32502589 + 32502569 32502609 41 TACCTGAACCCTCTCGTGGACGTGGGGTGCCAGTGAGAGGC TACCTGAACCCTCTCATGGACGTGGGGTGCCAGTGAGAGGC < 41bp 1 0.77382637424248 1 0.493462830781937 experiment 0.45234725151504 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502589 chr1:32502584 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_17817 0 0 1 0 2 KHDRBS1 chr1:32502644 5'GT 32502644 Upstream 61bp
chr1 32502584 32502584 1 + G A CESC 32502598 + 32502578 32502618 41 CCTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCT CCTCTCATGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCT < 41bp 1 0.59821474713066 1 0.356010168790817 experiment 0.803570505738681 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502598 chr1:32502584 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_17818 0 0 1 0 2 KHDRBS1 chr1:32502511 3'AG 32502511 Downstream 74bp
chr1 32502584 32502584 1 + G A CESC 32502598 + 32502578 32502618 41 CCTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCT CCTCTCATGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCT < 41bp 1 0.59821474713066 1 0.356010168790817 experiment 0.803570505738681 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502598 chr1:32502584 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_17818 0 0 1 0 2 KHDRBS1 chr1:32502644 5'GT 32502644 Upstream 61bp
chr1 32502584 32502584 1 + G A CESC 32502599 + 32502579 32502619 41 CTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCTG CTCTCATGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCTG < 41bp 1 0.783582626760737 1 0.150416374206543 experiment 0.432834746478525 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502599 chr1:32502584 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_17819 0 0 1 0 2 KHDRBS1 chr1:32502511 3'AG 32502511 Downstream 74bp
chr1 32502584 32502584 1 + G A CESC 32502599 + 32502579 32502619 41 CTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCTG CTCTCATGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCTG < 41bp 1 0.783582626760737 1 0.150416374206543 experiment 0.432834746478525 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502599 chr1:32502584 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_17819 0 0 1 0 2 KHDRBS1 chr1:32502644 5'GT 32502644 Upstream 61bp
chr2 86947866 86947866 1 + G C CESC 86947846 + 86947826 86947866 41 GAAGGTGCTGCACAAGTTCTCAGGCTACGGGCAGCTGTGCG GAAGGTGCTGCACAAGTTCTCAGGCTACGGGCAGCTGTGCC < 41bp 1 0.760379698068891 1 0.956708788871765 experiment 0.479240603862219 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control RMND5A ENSG00000153561 CDS Human protein_coding chr2:86947846 chr2:86947866 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_17822 0 0 1 0 1 RMND5A chr2:86947932 5'GT 86947932 Upstream 67bp
chr3 127340586 127340586 1 + G A CESC 127340602 + 127340582 127340622 41 ACCTGAAAAGGAAAATGATCCTGCAGCAGTTCTGAGGCCCT ACCTAAAAAGGAAAATGATCCTGCAGCAGTTCTGAGGCCCT < 41bp 1 0.5985422868964 1 0.870662450790405 experiment 0.8029154262072 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127340602 chr3:127340586 synonymous SNV . 0 5 hm5C_associated_SNPs_17823 0 0 1 0 1 MCM2 chr3:127340506 3'AG 127340506 Downstream 81bp
chr2 109347309 109347309 1 + G A CESC 109347326 + 109347306 109347346 41 GAAGAAAACACAGACAAAGCCGTTGAATGTTACAGGGTAAG GAAAAAAACACAGACAAAGCCGTTGAATGTTACAGGGTAAG < 41bp 1 0.0671810335519482 1 0.171215236186981 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347326 chr2:109347309 nonsynonymous SNV 0.870 0 4 hm5C_associated_SNPs_17824 0 0 1 0 1 RANBP2 chr2:109347230 3'AG 109347230 Downstream 80bp
chr17 79990299 79990299 1 + G T CESC 79990314 + 79990294 79990334 41 TACACGACCAACGCCTTCCCCGGAGAGTACATCCCCACCGT TACACTACCAACGCCTTCCCCGGAGAGTACATCCCCACCGT < 41bp 1 0.730082709554456 1 0.835151672363281 experiment 0.539834580891088 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RAC3 ENSG00000169750 CDS Human protein_coding chr17:79990314 chr17:79990299 synonymous SNV . 0 6 hm5C_associated_SNPs_17827 0 0 1 0 2 RAC3 chr17:79990263 3'AG 79990263 Downstream 37bp
chr17 79990299 79990299 1 + G T CESC 79990314 + 79990294 79990334 41 TACACGACCAACGCCTTCCCCGGAGAGTACATCCCCACCGT TACACTACCAACGCCTTCCCCGGAGAGTACATCCCCACCGT < 41bp 1 0.730082709554456 1 0.835151672363281 experiment 0.539834580891088 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RAC3 ENSG00000169750 CDS Human protein_coding chr17:79990314 chr17:79990299 synonymous SNV . 0 6 hm5C_associated_SNPs_17827 0 0 1 0 2 RAC3 chr17:79990334 5'GT 79990334 Upstream 36bp
chr1 205238159 205238159 1 + G A CESC 205238166 + 205238146 205238186 41 CCTGGACGTGCCCGATGGGGCACCGGACCCCCAGCGGACCA CCTGGACGTGCCCAATGGGGCACCGGACCCCCAGCGGACCA < 41bp 1 0.730667396448049 1 0.198182374238968 experiment 0.538665207103901 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TMCC2 ENSG00000133069 CDS Human protein_coding chr1:205238166 chr1:205238159 nonsynonymous SNV 0.859 1 14 hm5C_associated_SNPs_17828 0 0 0 0 1 TMCC2 chr1:205238078 3'AG 205238078 Downstream 82bp
chr17 38450670 38450670 1 + G T CESC 38450687 + 38450667 38450707 41 CTAGAGAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCT CTATAGAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCT < 41bp 1 0.547075359482236 1 0.327781856060028 experiment 0.905849281035528 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDC6 ENSG00000094804 CDS Human protein_coding chr17:38450687 chr17:38450670 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_17831 0 0 1 0 2 CDC6 chr17:38450616 3'AG 38450616 Downstream 55bp
chr17 38450670 38450670 1 + G T CESC 38450687 + 38450667 38450707 41 CTAGAGAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCT CTATAGAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCT < 41bp 1 0.547075359482236 1 0.327781856060028 experiment 0.905849281035528 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDC6 ENSG00000094804 CDS Human protein_coding chr17:38450687 chr17:38450670 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_17831 0 0 1 0 2 CDC6 chr17:38450755 5'GT 38450755 Upstream 86bp
chr6 36564699 36564699 1 + G C CESC 36564715 + 36564695 36564735 41 ATTTGAAGATCCCCGAGATGCAGCTGATGCAGTCCGAGAGC ATTTCAAGATCCCCGAGATGCAGCTGATGCAGTCCGAGAGC < 41bp 1 0.784509948878752 1 0.405087530612946 experiment 0.430980102242497 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36564715 chr6:36564699 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_17832 0 0 1 0 1 SRSF3 chr6:36564745 5'GT 36564745 Upstream 47bp
chr17 78022421 78022421 1 + G A CESC 78022426 + 78022406 78022446 41 CCCACCCCAGGGAAGGAGACCTGCCAGTGTTCCAGGACCAG CCCACCCCAGGGAAGAAGACCTGCCAGTGTTCCAGGACCAG < 41bp 1 0.273768611531086 1 0.0435957610607147 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78022426 chr17:78022421 nonsynonymous SNV 0.001 0 16 hm5C_associated_SNPs_17840 0 0 1 0 1 CCDC40 chr17:78022382 3'AG 78022382 Downstream 40bp
chr1 44058238 44058238 1 + C T CESC 44058240 + 44058220 44058260 41 TATGGGGGTGGGCGTCTTCACCCCCACCATTGAGGCCCGCA TATGGGGGTGGGCGTCTTTACCCCCACCATTGAGGCCCGCA < 41bp 1 0.150311293869613 1 0.099768340587616 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44058240 chr1:44058238 synonymous SNV . 0 19 hm5C_associated_SNPs_17841 0 0 0 0 1 PTPRF chr1:44058272 5'GT 44058272 Upstream 35bp
chr11 309109 309109 1 + T C CESC 309126 + 309106 309146 41 ATCTTCATGACCATTCTGCTCATCATCATCCCAGTGTTGGT ATCCTCATGACCATTCTGCTCATCATCATCCCAGTGTTGGT < 41bp 1 0.438399816642613 1 0.031124621629715 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFITM2 ENSG00000185201 CDS Human protein_coding chr11:309126 chr11:309109 nonsynonymous SNV 0.004 1 4 hm5C_associated_SNPs_17842 0 0 1 0 1 IFITM2 chr11:309013 3'AG 309013 Downstream 97bp
chr2 86712946 86712946 1 + C T CESC 86712950 + 86712930 86712970 41 GCCAAACTACTTTGTTCGGCCAGATCTGGGCCCCAAGATGT GCCAAACTACTTTGTTTGGCCAGATCTGGGCCCCAAGATGT < 41bp 1 0.293635050032219 1 0.385004103183746 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM3A ENSG00000115548 CDS Human protein_coding chr2:86712950 chr2:86712946 nonsynonymous SNV 0.994 5 17 hm5C_associated_SNPs_17844 0 0 1 0 2 KDM3A chr2:86712852 3'AG 86712852 Downstream 95bp
chr2 86712946 86712946 1 + C T CESC 86712950 + 86712930 86712970 41 GCCAAACTACTTTGTTCGGCCAGATCTGGGCCCCAAGATGT GCCAAACTACTTTGTTTGGCCAGATCTGGGCCCCAAGATGT < 41bp 1 0.293635050032219 1 0.385004103183746 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM3A ENSG00000115548 CDS Human protein_coding chr2:86712950 chr2:86712946 nonsynonymous SNV 0.994 5 17 hm5C_associated_SNPs_17844 0 0 1 0 2 KDM3A chr2:86712982 5'GT 86712982 Upstream 37bp
chr7 100210442 100210442 1 + G A CESC 100210428 + 100210408 100210448 41 AGCCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGG AGCCTGCATGCGCCGTGGGGCGCCCCAGGACCAGAAGCTGG < 41bp 1 0.372898563943667 1 0.289383500814438 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210428 chr7:100210442 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_17845 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 90bp
chr7 100210442 100210442 1 + G A CESC 100210430 + 100210410 100210450 41 CCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTG CCTGCATGCGCCGTGGGGCGCCCCAGGACCAGAAGCTGGTG < 41bp 1 0.693706024534206 1 0.143152385950089 experiment 0.612587950931588 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210430 chr7:100210442 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_17846 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 90bp
chr7 100210442 100210442 1 + G A CESC 100210431 + 100210411 100210451 41 CTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGG CTGCATGCGCCGTGGGGCGCCCCAGGACCAGAAGCTGGTGG < 41bp 1 0.497832745675817 1 0.596203625202179 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210431 chr7:100210442 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_17847 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 90bp
chr7 100210442 100210442 1 + G A CESC 100210432 + 100210412 100210452 41 TGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGGG TGCATGCGCCGTGGGGCGCCCCAGGACCAGAAGCTGGTGGG < 41bp 1 0.624898193702754 1 0.779690742492676 experiment 0.750203612594492 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210432 chr7:100210442 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_17848 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 90bp
chr7 100210442 100210442 1 + G A CESC 100210460 + 100210440 100210480 41 AGGAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGG AGAAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGG < 41bp 1 0.303543716154609 1 0.140268415212631 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210460 chr7:100210442 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_17849 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 90bp
chr7 100210442 100210442 1 + G A CESC 100210461 + 100210441 100210481 41 GGAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGG GAAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGG < 41bp 1 0.433470974297572 1 0.10816752910614 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210461 chr7:100210442 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_17850 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 90bp
chr7 100210442 100210442 1 + G A CESC 100210462 + 100210442 100210482 41 GAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGGG AAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGGG < 41bp 1 0.397840716772914 1 0.422591388225555 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210462 chr7:100210442 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_17851 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 90bp
chr1 156202177 156202177 1 + C G CESC 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGCGATGACACAGCAAATGTATGACAAGTTTATA < 41bp 1 0.150617627492317 1 0.378735959529877 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202177 nonsynonymous SNV 0.990 3 26 hm5C_associated_SNPs_17852 0 0 0 3 2 PMF1;PMF1-BGLAP chr1:156202111 3'AG 156202111 Downstream 67bp
chr1 156202177 156202177 1 + C G CESC 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGCGATGACACAGCAAATGTATGACAAGTTTATA < 41bp 1 0.150617627492317 1 0.378735959529877 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202177 nonsynonymous SNV 0.990 3 26 hm5C_associated_SNPs_17852 0 0 0 3 2 PMF1;PMF1-BGLAP chr1:156202216 5'GT 156202216 Upstream 40bp
chr17 25904637 25904637 1 + C T CESC 25904657 + 25904637 25904677 41 CACCTGCCTGCGGAAGGTGACAGGCCTGGGTACGTGGGGCC TACCTGCCTGCGGAAGGTGACAGGCCTGGGTACGTGGGGCC < 41bp 1 0.559381342277386 1 0.806182384490967 experiment 0.881237315445228 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control KSR1 ENSG00000141068 CDS Human protein_coding chr17:25904657 chr17:25904637 synonymous SNV . 0 1 hm5C_associated_SNPs_17856 0 0 1 0 1 KSR1 chr17:25904665 5'GT 25904665 Upstream 29bp
chr7 100210422 100210422 1 + G C CESC 100210428 + 100210408 100210448 41 AGCCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGG AGCCTGCATGCGCCCTGGGGCGCCCCAGGACCAGGAGCTGG < 41bp 1 0.410527332061924 1 0.178643703460693 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210428 chr7:100210422 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_17857 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 70bp
chr7 100210422 100210422 1 + G C CESC 100210430 + 100210410 100210450 41 CCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTG CCTGCATGCGCCCTGGGGCGCCCCAGGACCAGGAGCTGGTG < 41bp 1 0.659777568841778 1 0.108204871416092 experiment 0.680444862316445 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210430 chr7:100210422 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_17858 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 70bp
chr7 100210422 100210422 1 + G C CESC 100210431 + 100210411 100210451 41 CTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGG CTGCATGCGCCCTGGGGCGCCCCAGGACCAGGAGCTGGTGG < 41bp 1 0.487001751615992 1 0.733282148838043 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210431 chr7:100210422 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_17859 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 70bp
chr7 100210422 100210422 1 + G C CESC 100210432 + 100210412 100210452 41 TGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGGG TGCATGCGCCCTGGGGCGCCCCAGGACCAGGAGCTGGTGGG < 41bp 1 0.58432392730896 1 0.671273589134216 experiment 0.83135214538208 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210432 chr7:100210422 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_17860 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 70bp
chr22 38352859 38352859 1 + C T CESC 38352843 + 38352823 38352863 41 CTAGATGACTTGGAGAATGCCGAAGAGGTCAGTATTCAGCC CTAGATGACTTGGAGAATGCCGAAGAGGTCAGTATTTAGCC < 41bp 1 0.591050457949479 1 0.579429566860199 experiment 0.817899084101042 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352843 chr22:38352859 stopgain 0.146 0 37 hm5C_associated_SNPs_17861 0 0 1 0 2 POLR2F chr22:38352780 3'AG 38352780 Downstream 80bp
chr22 38352859 38352859 1 + C T CESC 38352843 + 38352823 38352863 41 CTAGATGACTTGGAGAATGCCGAAGAGGTCAGTATTCAGCC CTAGATGACTTGGAGAATGCCGAAGAGGTCAGTATTTAGCC < 41bp 1 0.591050457949479 1 0.579429566860199 experiment 0.817899084101042 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352843 chr22:38352859 stopgain 0.146 0 37 hm5C_associated_SNPs_17861 0 0 1 0 2 POLR2F chr22:38352908 5'GT 38352908 Upstream 50bp
chr5 231090 231090 1 + A C CESC 231073 + 231053 231093 41 CCATGATCACCAGGGCAGGCCTTCCTTGCCAGGACCTAGAG CCATGATCACCAGGGCAGGCCTTCCTTGCCAGGACCTCGAG < 41bp 1 0.232562925612866 1 0.224183887243271 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SDHA ENSG00000073578 CDS Human protein_coding chr5:231073 chr5:231090 synonymous SNV . 0 38 hm5C_associated_SNPs_17862 0 0 1 0 2 SDHA chr5:230991 3'AG 230991 Downstream 100bp
chr5 231090 231090 1 + A C CESC 231073 + 231053 231093 41 CCATGATCACCAGGGCAGGCCTTCCTTGCCAGGACCTAGAG CCATGATCACCAGGGCAGGCCTTCCTTGCCAGGACCTCGAG < 41bp 1 0.232562925612866 1 0.224183887243271 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SDHA ENSG00000073578 CDS Human protein_coding chr5:231073 chr5:231090 synonymous SNV . 0 38 hm5C_associated_SNPs_17862 0 0 1 0 2 SDHA chr5:231115 5'GT 231115 Upstream 26bp
chr6 108497844 108497844 1 + G A CESC 108497862 + 108497842 108497882 41 CCGCGGTCACGCAGCTGGAGCCGCACGGCCTGGAGCTGGCC CCACGGTCACGCAGCTGGAGCCGCACGGCCTGGAGCTGGCC < 41bp 1 0.533534343222487 1 0.077388197183609 experiment 0.932931313555025 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108497862 chr6:108497844 nonsynonymous SNV 0.954 0 3 hm5C_associated_SNPs_17863 0 0 0 0 1 NR2E1 chr6:108497942 5'GT 108497942 Upstream 99bp
chr7 4824613 4824613 1 + C G CESC 4824600 + 4824580 4824620 41 TCCGCCACCTCCTCTGCCGGCCGCCTGCTGCCGCCCCGGGA TCCGCCACCTCCTCTGCCGGCCGCCTGCTGCCGGCCCGGGA < 41bp 1 0.1228077918567 1 0.202209532260895 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824600 chr7:4824613 nonsynonymous SNV 0.929 1 34 hm5C_associated_SNPs_17866 0 0 1 0 2 AP5Z1 chr7:4824539 3'AG 4824539 Downstream 75bp
chr7 4824613 4824613 1 + C G CESC 4824600 + 4824580 4824620 41 TCCGCCACCTCCTCTGCCGGCCGCCTGCTGCCGCCCCGGGA TCCGCCACCTCCTCTGCCGGCCGCCTGCTGCCGGCCCGGGA < 41bp 1 0.1228077918567 1 0.202209532260895 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824600 chr7:4824613 nonsynonymous SNV 0.929 1 34 hm5C_associated_SNPs_17866 0 0 1 0 2 AP5Z1 chr7:4824679 5'GT 4824679 Upstream 67bp
chr7 4824613 4824613 1 + C G CESC 4824610 + 4824590 4824630 41 CCTCTGCCGGCCGCCTGCTGCCGCCCCGGGAGCGGCTTCGG CCTCTGCCGGCCGCCTGCTGCCGGCCCGGGAGCGGCTTCGG < 41bp 1 0.321748885794218 1 0.522296071052551 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824610 chr7:4824613 nonsynonymous SNV 0.929 1 24 hm5C_associated_SNPs_17867 0 0 1 0 2 AP5Z1 chr7:4824539 3'AG 4824539 Downstream 75bp
chr7 4824613 4824613 1 + C G CESC 4824610 + 4824590 4824630 41 CCTCTGCCGGCCGCCTGCTGCCGCCCCGGGAGCGGCTTCGG CCTCTGCCGGCCGCCTGCTGCCGGCCCGGGAGCGGCTTCGG < 41bp 1 0.321748885794218 1 0.522296071052551 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824610 chr7:4824613 nonsynonymous SNV 0.929 1 24 hm5C_associated_SNPs_17867 0 0 1 0 2 AP5Z1 chr7:4824679 5'GT 4824679 Upstream 67bp
chr6 80744991 80744991 1 + C T CESC 80744989 + 80744969 80745009 41 TTGTTTAATTGCAGTGAAATCACGGACCAGTACATCTACAT TTGTTTAATTGCAGTGAAATCATGGACCAGTACATCTACAT < 41bp 1 0.525777028501912 1 0.887823939323425 experiment 0.948445942996176 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTK ENSG00000112742 CDS Human protein_coding chr6:80744989 chr6:80744991 nonsynonymous SNV 0.988 4 23 hm5C_associated_SNPs_17868 0 0 1 0 1 TTK chr6:80744983 3'AG 80744983 Downstream 9bp
chr12 113730871 113730871 1 + G C CESC 113730854 + 113730834 113730874 41 GTCACCAGGCTGCTGGAGACCCTCTCCCAGATGGAGAGATA GTCACCAGGCTGCTGGAGACCCTCTCCCAGATGGAGACATA < 41bp 1 0.0975192317714688 1 0.0350844264030457 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113730854 chr12:113730871 nonsynonymous SNV 0.759 0 38 hm5C_associated_SNPs_17870 0 0 0 0 1 TPCN1 chr12:113730878 5'GT 113730878 Upstream 8bp
chr11 61490974 61490974 1 + A T CESC 61490991 + 61490971 61491011 41 CCCACGGGCCGCACCTTTGTCAAGCTGAGAGCCACCAAGAG CCCTCGGGCCGCACCTTTGTCAAGCTGAGAGCCACCAAGAG < 41bp 1 0.44923095139299 1 0.845538735389709 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DAGLA ENSG00000134780 CDS Human protein_coding chr11:61490991 chr11:61490974 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_17871 0 0 0 0 2 DAGLA chr11:61490906 3'AG 61490906 Downstream 69bp
chr11 61490974 61490974 1 + A T CESC 61490991 + 61490971 61491011 41 CCCACGGGCCGCACCTTTGTCAAGCTGAGAGCCACCAAGAG CCCTCGGGCCGCACCTTTGTCAAGCTGAGAGCCACCAAGAG < 41bp 1 0.44923095139299 1 0.845538735389709 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DAGLA ENSG00000134780 CDS Human protein_coding chr11:61490991 chr11:61490974 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_17871 0 0 0 0 2 DAGLA chr11:61491044 5'GT 61491044 Upstream 71bp
chr7 73969520 73969520 1 + G A CESC 73969540 + 73969520 73969560 41 GAGGGAGTCAAAGAGCCCATCATGGATAGTCAAGGTACCCA AAGGGAGTCAAAGAGCCCATCATGGATAGTCAAGGTACCCA < 41bp 1 0.381092844889617 1 0.148881196975708 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73969540 chr7:73969520 nonsynonymous SNV 0.958 1 1 hm5C_associated_SNPs_17872 0 0 0 0 2 GTF2IRD1 chr7:73969504 3'AG 73969504 Downstream 17bp
chr7 73969520 73969520 1 + G A CESC 73969540 + 73969520 73969560 41 GAGGGAGTCAAAGAGCCCATCATGGATAGTCAAGGTACCCA AAGGGAGTCAAAGAGCCCATCATGGATAGTCAAGGTACCCA < 41bp 1 0.381092844889617 1 0.148881196975708 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73969540 chr7:73969520 nonsynonymous SNV 0.958 1 1 hm5C_associated_SNPs_17872 0 0 0 0 2 GTF2IRD1 chr7:73969553 5'GT 73969553 Upstream 34bp
chr11 6631790 6631790 1 + G A CESC 6631793 + 6631773 6631813 41 TGAAGACCCTGCAAAGCGACCCAAATTTGACATGATTGTGC TGAAGACCCTGCAAAGCAACCCAAATTTGACATGATTGTGC < 41bp 1 0.275070790660645 1 0.0712427198886871 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6631793 chr11:6631790 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_17873 0 0 1 0 1 ILK chr11:6631693 3'AG 6631693 Downstream 98bp
chrX 128695239 128695239 1 + G C CESC 128695224 + 128695204 128695244 41 TGTGAAGGAACAAGAATGGTCCATGGCTGTAGAGAGAGGTT TGTGAAGGAACAAGAATGGTCCATGGCTGTAGAGACAGGTT < 41bp 1 0.0911829547674678 1 0.074910044670105 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128695224 chrX:128695239 nonsynonymous SNV 0.988 2 36 hm5C_associated_SNPs_17874 0 0 1 0 2 OCRL chrX:128695156 3'AG 128695156 Downstream 84bp
chrX 128695239 128695239 1 + G C CESC 128695224 + 128695204 128695244 41 TGTGAAGGAACAAGAATGGTCCATGGCTGTAGAGAGAGGTT TGTGAAGGAACAAGAATGGTCCATGGCTGTAGAGACAGGTT < 41bp 1 0.0911829547674678 1 0.074910044670105 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128695224 chrX:128695239 nonsynonymous SNV 0.988 2 36 hm5C_associated_SNPs_17874 0 0 1 0 2 OCRL chrX:128695270 5'GT 128695270 Upstream 32bp
chr7 100486133 100486133 1 + G A CESC 100486138 + 100486118 100486158 41 CCATTGTGGAATATCGGGACCTGGATGCCCCAGACGATGTT CCATTGTGGAATATCAGGACCTGGATGCCCCAGACGATGTT < 41bp 1 0.702992224235365 1 0.438530623912811 experiment 0.59401555152927 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100486138 chr7:100486133 nonsynonymous SNV 0.991 3 16 hm5C_associated_SNPs_17875 0 0 1 0 1 SRRT chr7:100486095 3'AG 100486095 Downstream 39bp
chr6 25551239 25551239 1 + G C CESC 25551227 + 25551207 25551247 41 CGACAAGACTTGATTCATGCCAGCACCGAAAAGATTTCTAT CGACAAGACTTGATTCATGCCAGCACCGAAAACATTTCTAT < 41bp 1 0.447326492445712 1 0.282079756259918 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25551227 chr6:25551239 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_17876 0 0 0 0 1 CARMIL1 chr6:25551313 5'GT 25551313 Upstream 75bp
chr11 119045980 119045980 1 + C G CESC 119045961 + 119045941 119045981 41 GCTGCCTCTGCGGGCTCTGCCTCTGCTCTTCAACCTGATCA GCTGCCTCTGCGGGCTCTGCCTCTGCTCTTCAACCTGATGA < 41bp 1 0.344021158317805 1 0.423903077840805 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119045961 chr11:119045980 nonsynonymous SNV 0.998 2 40 hm5C_associated_SNPs_17877 0 0 1 0 1 NLRX1 chr11:119045983 5'GT 119045983 Upstream 4bp
chr3 41275108 41275108 1 + C G CESC 41275104 + 41275084 41275124 41 TCACCTGTGCAGCTGGAATTCTTTCTAACCTCACTTGCAAT TCACCTGTGCAGCTGGAATTCTTTGTAACCTCACTTGCAAT < 41bp 1 0.264151039792226 1 0.314148753881454 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41275104 chr3:41275108 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_17878 0 0 1 0 1 CTNNB1 chr3:41275020 3'AG 41275020 Downstream 89bp
chr17 27938969 27938969 1 + G C CESC 27938953 + 27938933 27938973 41 GCCATCACTGCAGAAGAATACTTCAACCCCAACTTTGAGCT GCCATCACTGCAGAAGAATACTTCAACCCCAACTTTCAGCT < 41bp 1 0.328853932194364 1 0.249121427536011 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD13B ENSG00000198720 CDS Human protein_coding chr17:27938953 chr17:27938969 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_17879 0 0 1 0 2 ANKRD13B chr17:27938894 3'AG 27938894 Downstream 76bp
chr17 27938969 27938969 1 + G C CESC 27938953 + 27938933 27938973 41 GCCATCACTGCAGAAGAATACTTCAACCCCAACTTTGAGCT GCCATCACTGCAGAAGAATACTTCAACCCCAACTTTCAGCT < 41bp 1 0.328853932194364 1 0.249121427536011 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD13B ENSG00000198720 CDS Human protein_coding chr17:27938953 chr17:27938969 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_17879 0 0 1 0 2 ANKRD13B chr17:27939024 5'GT 27939024 Upstream 56bp
chr7 33014871 33014871 1 + C T CESC 33014888 + 33014868 33014908 41 GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCG GTTTAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCG < 41bp 1 0.524284457935168 1 0.736395001411438 experiment 0.951431084129663 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014888 chr7:33014871 stopgain 0.998 1 4 hm5C_associated_SNPs_17880 0 0 1 1 1 FKBP9 chr7:33014794 3'AG 33014794 Downstream 78bp
chr6 36564728 36564728 1 + C T CESC 36564724 + 36564704 36564744 41 TCCCCGAGATGCAGCTGATGCAGTCCGAGAGCTAGATGGAA TCCCCGAGATGCAGCTGATGCAGTTCGAGAGCTAGATGGAA < 41bp 1 0.340271182153389 1 0.182781428098679 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36564724 chr6:36564728 synonymous SNV . 0 25 hm5C_associated_SNPs_17881 0 0 1 0 1 SRSF3 chr6:36564745 5'GT 36564745 Upstream 18bp
chr6 36564728 36564728 1 + C T CESC 36564735 + 36564715 36564755 41 CAGCTGATGCAGTCCGAGAGCTAGATGGAAGGTGATTTAAT CAGCTGATGCAGTTCGAGAGCTAGATGGAAGGTGATTTAAT < 41bp 1 0.713115987402331 1 0.62789922952652 experiment 0.573768025195338 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36564735 chr6:36564728 synonymous SNV . 0 14 hm5C_associated_SNPs_17882 0 0 1 0 1 SRSF3 chr6:36564745 5'GT 36564745 Upstream 18bp
chr20 47691934 47691934 1 + C A CESC 47691921 + 47691901 47691941 41 ATGCAAGTTTTTTGAGGGACCTGTGACAGGAATCTTCTCTG ATGCAAGTTTTTTGAGGGACCTGTGACAGGAATATTCTCTG < 41bp 1 0.486920887937886 1 0.237718135118484 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CSE1L ENSG00000124207 CDS Human protein_coding chr20:47691921 chr20:47691934 synonymous SNV . 0 34 hm5C_associated_SNPs_17883 0 0 1 0 1 CSE1L chr20:47691855 3'AG 47691855 Downstream 80bp
chr6 32134696 32134696 1 + C T CESC 32134701 + 32134681 32134721 41 CCTCAGCCATCTGCGCCAAGCCTTGCCTGAACGGAGGCGTC CCTCAGCCATCTGCGTCAAGCCTTGCCTGAACGGAGGCGTC < 41bp 1 0.0620264518929349 1 0.038166880607605 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134701 chr6:32134696 nonsynonymous SNV 0.994 0 16 hm5C_associated_SNPs_17884 0 0 1 0 2 EGFL8 chr6:32134687 3'AG 32134687 Downstream 10bp
chr6 32134696 32134696 1 + C T CESC 32134701 + 32134681 32134721 41 CCTCAGCCATCTGCGCCAAGCCTTGCCTGAACGGAGGCGTC CCTCAGCCATCTGCGTCAAGCCTTGCCTGAACGGAGGCGTC < 41bp 1 0.0620264518929349 1 0.038166880607605 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134701 chr6:32134696 nonsynonymous SNV 0.994 0 16 hm5C_associated_SNPs_17884 0 0 1 0 2 EGFL8 chr6:32134782 5'GT 32134782 Upstream 87bp
chr6 32134696 32134696 1 + C T CESC 32134702 + 32134682 32134722 41 CTCAGCCATCTGCGCCAAGCCTTGCCTGAACGGAGGCGTCT CTCAGCCATCTGCGTCAAGCCTTGCCTGAACGGAGGCGTCT < 41bp 1 0.202785606728345 1 0.0347771942615509 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134702 chr6:32134696 nonsynonymous SNV 0.994 0 15 hm5C_associated_SNPs_17885 0 0 1 0 2 EGFL8 chr6:32134687 3'AG 32134687 Downstream 10bp
chr6 32134696 32134696 1 + C T CESC 32134702 + 32134682 32134722 41 CTCAGCCATCTGCGCCAAGCCTTGCCTGAACGGAGGCGTCT CTCAGCCATCTGCGTCAAGCCTTGCCTGAACGGAGGCGTCT < 41bp 1 0.202785606728345 1 0.0347771942615509 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134702 chr6:32134696 nonsynonymous SNV 0.994 0 15 hm5C_associated_SNPs_17885 0 0 1 0 2 EGFL8 chr6:32134782 5'GT 32134782 Upstream 87bp
chr6 44221279 44221279 1 + G T CESC 44221288 + 44221268 44221308 41 CAGTTCCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGAT CAGTTCCTGATTAGATCCCCCCTCTCGAGGGCGATGAGGAT < 41bp 1 0.0323908330181465 1 0.0409020185470581 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44221288 chr6:44221279 stopgain 0.997 0 12 hm5C_associated_SNPs_17886 0 0 1 0 1 HSP90AB1 chr6:44221226 3'AG 44221226 Downstream 54bp
chr6 44221279 44221279 1 + G T CESC 44221289 + 44221269 44221309 41 AGTTCCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGATG AGTTCCTGATTAGATCCCCCCTCTCGAGGGCGATGAGGATG < 41bp 1 0.25058807428027 1 0.0932473540306091 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44221289 chr6:44221279 stopgain 0.997 0 11 hm5C_associated_SNPs_17887 0 0 1 0 1 HSP90AB1 chr6:44221226 3'AG 44221226 Downstream 54bp
chr16 11066827 11066827 1 + G A CESC 11066834 + 11066814 11066854 41 GCACTACATCCGAGATAAAACTGCTGTTCCTTACTTCTCCA GCACTACATCCGAAATAAAACTGCTGTTCCTTACTTCTCCA < 41bp 1 0.342471351488011 1 0.0396578907966614 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11066834 chr16:11066827 nonsynonymous SNV 0.998 3 14 hm5C_associated_SNPs_17888 0 0 1 0 2 CLEC16A chr16:11066795 3'AG 11066795 Downstream 33bp
chr16 11066827 11066827 1 + G A CESC 11066834 + 11066814 11066854 41 GCACTACATCCGAGATAAAACTGCTGTTCCTTACTTCTCCA GCACTACATCCGAAATAAAACTGCTGTTCCTTACTTCTCCA < 41bp 1 0.342471351488011 1 0.0396578907966614 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11066834 chr16:11066827 nonsynonymous SNV 0.998 3 14 hm5C_associated_SNPs_17888 0 0 1 0 2 CLEC16A chr16:11066918 5'GT 11066918 Upstream 92bp
chr11 68131409 68131409 1 + T A CESC 68131399 + 68131379 68131419 41 TCCAGGTGCTGAGCCAGGAGCGGCAGCCTTTCTGTGAGTGC TCCAGGTGCTGAGCCAGGAGCGGCAGCCTTACTGTGAGTGC < 41bp 1 0.706838840415803 1 0.43895098567009 experiment 0.586322319168394 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68131399 chr11:68131409 nonsynonymous SNV 0.977 1 31 hm5C_associated_SNPs_17890 0 0 1 0 1 LRP5 chr11:68131411 5'GT 68131411 Upstream 3bp
chr11 68131409 68131409 1 + T A CESC 68131406 + 68131386 68131426 41 GCTGAGCCAGGAGCGGCAGCCTTTCTGTGAGTGCCGGCTGG GCTGAGCCAGGAGCGGCAGCCTTACTGTGAGTGCCGGCTGG < 41bp 1 0.149567336558328 1 0.093495100736618 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68131406 chr11:68131409 nonsynonymous SNV 0.977 1 24 hm5C_associated_SNPs_17891 0 0 1 0 1 LRP5 chr11:68131411 5'GT 68131411 Upstream 3bp
chr11 68131409 68131409 1 + T A CESC 68131410 + 68131390 68131430 41 AGCCAGGAGCGGCAGCCTTTCTGTGAGTGCCGGCTGGGGCG AGCCAGGAGCGGCAGCCTTACTGTGAGTGCCGGCTGGGGCG < 41bp 1 0.543898275630089 1 0.343025147914886 experiment 0.912203448739821 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68131410 chr11:68131409 nonsynonymous SNV 0.977 1 20 hm5C_associated_SNPs_17892 0 0 1 0 1 LRP5 chr11:68131411 5'GT 68131411 Upstream 3bp
chrX 135291484 135291484 1 + C T CESC 135291501 + 135291481 135291521 41 TCTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATC TCTTACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATC < 41bp 1 0.0769881601932886 1 0.173352688550949 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291501 chrX:135291484 synonymous SNV . 0 4 hm5C_associated_SNPs_17893 0 0 0 0 1 FHL1 chrX:135291402 3'AG 135291402 Downstream 83bp
chrX 135291484 135291484 1 + C T CESC 135291502 + 135291482 135291522 41 CTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATCC CTTACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATCC < 41bp 1 0.219021410378394 1 0.0871595740318298 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291502 chrX:135291484 synonymous SNV . 0 3 hm5C_associated_SNPs_17894 0 0 0 0 1 FHL1 chrX:135291402 3'AG 135291402 Downstream 83bp
chr1 207510124 207510124 1 + C G CESC 207510119 + 207510099 207510139 41 AACTACAGAAGTCTCACCAACTTCTCAGAAAACCACCACAA AACTACAGAAGTCTCACCAACTTCTGAGAAAACCACCACAA < 41bp 1 0.432278578537792 1 0.714024066925049 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CD55 ENSG00000196352 CDS Human protein_coding chr1:207510119 chr1:207510124 nonsynonymous SNV 0.100 2 26 hm5C_associated_SNPs_17895 0 0 1 0 2 CD55 chr1:207510038 3'AG 207510038 Downstream 87bp
chr1 207510124 207510124 1 + C G CESC 207510119 + 207510099 207510139 41 AACTACAGAAGTCTCACCAACTTCTCAGAAAACCACCACAA AACTACAGAAGTCTCACCAACTTCTGAGAAAACCACCACAA < 41bp 1 0.432278578537792 1 0.714024066925049 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CD55 ENSG00000196352 CDS Human protein_coding chr1:207510119 chr1:207510124 nonsynonymous SNV 0.100 2 26 hm5C_associated_SNPs_17895 0 0 1 0 2 CD55 chr1:207510163 5'GT 207510163 Upstream 40bp
chr6 161519323 161519323 1 + C G CESC 161519314 + 161519294 161519334 41 TTTCTTCTTGTCTTAGCACTCGGAGCATGCCTTCCGACGCG TTTCTTCTTGTCTTAGCACTCGGAGCATGGCTTCCGACGCG < 41bp 1 0.724375025478723 1 0.973347783088684 experiment 0.551249949042554 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161519314 chr6:161519323 nonsynonymous SNV 0.889 1 30 hm5C_associated_SNPs_17896 0 0 1 0 1 MAP3K4 chr6:161519310 3'AG 161519310 Downstream 14bp
chr19 46003774 46003774 1 + C G CESC 46003772 + 46003752 46003792 41 ACAGTTTTCAGGACTCTGGCCTCAGAGGACATCCCAGATTT ACAGTTTTCAGGACTCTGGCCTGAGAGGACATCCCAGATTT < 41bp 1 0.56508504802136 1 0.295977771282196 experiment 0.86982990395728 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPM1N ENSG00000213889 CDS Human protein_coding chr19:46003772 chr19:46003774 stopgain 0.999 0 23 hm5C_associated_SNPs_17897 0 0 0 0 2 PPM1N chr19:46003714 3'AG 46003714 Downstream 61bp
chr19 46003774 46003774 1 + C G CESC 46003772 + 46003752 46003792 41 ACAGTTTTCAGGACTCTGGCCTCAGAGGACATCCCAGATTT ACAGTTTTCAGGACTCTGGCCTGAGAGGACATCCCAGATTT < 41bp 1 0.56508504802136 1 0.295977771282196 experiment 0.86982990395728 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPM1N ENSG00000213889 CDS Human protein_coding chr19:46003772 chr19:46003774 stopgain 0.999 0 23 hm5C_associated_SNPs_17897 0 0 0 0 2 PPM1N chr19:46003819 5'GT 46003819 Upstream 46bp
chr19 46003774 46003774 1 + C G CESC 46003784 + 46003764 46003804 41 ACTCTGGCCTCAGAGGACATCCCAGATTTACCTCCTGGGGG ACTCTGGCCTGAGAGGACATCCCAGATTTACCTCCTGGGGG < 41bp 1 0.395610917743406 1 0.316212952136993 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control PPM1N ENSG00000213889 CDS Human protein_coding chr19:46003784 chr19:46003774 stopgain 0.999 0 11 hm5C_associated_SNPs_17898 0 0 0 0 2 PPM1N chr19:46003714 3'AG 46003714 Downstream 61bp
chr19 46003774 46003774 1 + C G CESC 46003784 + 46003764 46003804 41 ACTCTGGCCTCAGAGGACATCCCAGATTTACCTCCTGGGGG ACTCTGGCCTGAGAGGACATCCCAGATTTACCTCCTGGGGG < 41bp 1 0.395610917743406 1 0.316212952136993 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control PPM1N ENSG00000213889 CDS Human protein_coding chr19:46003784 chr19:46003774 stopgain 0.999 0 11 hm5C_associated_SNPs_17898 0 0 0 0 2 PPM1N chr19:46003819 5'GT 46003819 Upstream 46bp
chr19 10657564 10657564 1 + G T CESC 10657575 + 10657555 10657595 41 GCTGTCAGGGTCAGCCTCTCCCAGCCGGTACCATGGGCCTG GCTGTCAGGTTCAGCCTCTCCCAGCCGGTACCATGGGCCTG < 41bp 1 0.414642337676417 1 0.257621318101883 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATG4D ENSG00000130734 CDS Human protein_coding chr19:10657575 chr19:10657564 synonymous SNV . 0 10 hm5C_associated_SNPs_17899 0 0 0 0 1 ATG4D chr19:10657515 3'AG 10657515 Downstream 50bp
chr16 23578363 23578363 1 + C T CESC 23578358 + 23578338 23578378 41 TAAAAAATGTGGTCAGTGAACCTATCGAAGGACATGAAGAC TAAAAAATGTGGTCAGTGAACCTATTGAAGGACATGAAGAC < 41bp 1 0.0924726569222001 1 0.117422729730606 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBFD1 ENSG00000103353 CDS Human protein_coding chr16:23578358 chr16:23578363 synonymous SNV . 0 26 hm5C_associated_SNPs_17900 0 0 1 0 2 UBFD1 chr16:23578308 3'AG 23578308 Downstream 56bp
chr16 23578363 23578363 1 + C T CESC 23578358 + 23578338 23578378 41 TAAAAAATGTGGTCAGTGAACCTATCGAAGGACATGAAGAC TAAAAAATGTGGTCAGTGAACCTATTGAAGGACATGAAGAC < 41bp 1 0.0924726569222001 1 0.117422729730606 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBFD1 ENSG00000103353 CDS Human protein_coding chr16:23578358 chr16:23578363 synonymous SNV . 0 26 hm5C_associated_SNPs_17900 0 0 1 0 2 UBFD1 chr16:23578390 5'GT 23578390 Upstream 28bp
chr5 179151711 179151711 1 + G A CESC 179151698 + 179151678 179151718 41 GTATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAG GTATAAGAAAACTGATGCACCTCAACCGGATGTAAAGGAAG < 41bp 1 0.505180658193162 1 0.476354748010635 experiment 0.989638683613675 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151698 chr5:179151711 synonymous SNV . 0 34 hm5C_associated_SNPs_17902 0 0 1 0 2 CANX chr5:179151658 3'AG 179151658 Downstream 54bp
chr5 179151711 179151711 1 + G A CESC 179151698 + 179151678 179151718 41 GTATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAG GTATAAGAAAACTGATGCACCTCAACCGGATGTAAAGGAAG < 41bp 1 0.505180658193162 1 0.476354748010635 experiment 0.989638683613675 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151698 chr5:179151711 synonymous SNV . 0 34 hm5C_associated_SNPs_17902 0 0 1 0 2 CANX chr5:179151784 5'GT 179151784 Upstream 74bp
chr5 179151711 179151711 1 + G A CESC 179151700 + 179151680 179151720 41 ATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAG ATAAGAAAACTGATGCACCTCAACCGGATGTAAAGGAAGAG < 41bp 1 0.248612934728224 1 0.193378061056137 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151700 chr5:179151711 synonymous SNV . 0 32 hm5C_associated_SNPs_17903 0 0 1 0 2 CANX chr5:179151658 3'AG 179151658 Downstream 54bp
chr5 179151711 179151711 1 + G A CESC 179151700 + 179151680 179151720 41 ATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAG ATAAGAAAACTGATGCACCTCAACCGGATGTAAAGGAAGAG < 41bp 1 0.248612934728224 1 0.193378061056137 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151700 chr5:179151711 synonymous SNV . 0 32 hm5C_associated_SNPs_17903 0 0 1 0 2 CANX chr5:179151784 5'GT 179151784 Upstream 74bp
chr5 179151711 179151711 1 + G A CESC 179151704 + 179151684 179151724 41 GAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAGGAAG GAAAACTGATGCACCTCAACCGGATGTAAAGGAAGAGGAAG < 41bp 1 0.498066983364009 1 0.590577304363251 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151704 chr5:179151711 synonymous SNV . 0 28 hm5C_associated_SNPs_17904 0 0 1 0 2 CANX chr5:179151658 3'AG 179151658 Downstream 54bp
chr5 179151711 179151711 1 + G A CESC 179151704 + 179151684 179151724 41 GAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAGGAAG GAAAACTGATGCACCTCAACCGGATGTAAAGGAAGAGGAAG < 41bp 1 0.498066983364009 1 0.590577304363251 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151704 chr5:179151711 synonymous SNV . 0 28 hm5C_associated_SNPs_17904 0 0 1 0 2 CANX chr5:179151784 5'GT 179151784 Upstream 74bp
chr1 984694 984694 1 + G T CESC 984697 + 984677 984717 41 TGGCACCGCCTGGAGCTGTCCCGGCACTGGCGCCGGGGCAC TGGCACCGCCTGGAGCTTTCCCGGCACTGGCGCCGGGGCAC < 41bp 1 0.352259391476932 1 0.770837783813477 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984697 chr1:984694 synonymous SNV . 0 18 hm5C_associated_SNPs_17905 0 0 1 0 1 AGRN chr1:984616 3'AG 984616 Downstream 79bp
chr1 984694 984694 1 + G T CESC 984701 + 984681 984721 41 ACCGCCTGGAGCTGTCCCGGCACTGGCGCCGGGGCACCCTC ACCGCCTGGAGCTTTCCCGGCACTGGCGCCGGGGCACCCTC < 41bp 1 0.222373450678542 1 0.334635525941849 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984701 chr1:984694 synonymous SNV . 0 14 hm5C_associated_SNPs_17906 0 0 1 0 1 AGRN chr1:984616 3'AG 984616 Downstream 79bp
chr1 984694 984694 1 + G T CESC 984709 + 984689 984729 41 GAGCTGTCCCGGCACTGGCGCCGGGGCACCCTCTCGGTGGA GAGCTTTCCCGGCACTGGCGCCGGGGCACCCTCTCGGTGGA < 41bp 1 0.40195136240585 1 0.787657260894775 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984709 chr1:984694 synonymous SNV . 0 6 hm5C_associated_SNPs_17907 0 0 1 0 1 AGRN chr1:984616 3'AG 984616 Downstream 79bp
chr1 984694 984694 1 + G T CESC 984710 + 984690 984730 41 AGCTGTCCCGGCACTGGCGCCGGGGCACCCTCTCGGTGGAT AGCTTTCCCGGCACTGGCGCCGGGGCACCCTCTCGGTGGAT < 41bp 1 0.471770558760449 1 0.832979679107666 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984710 chr1:984694 synonymous SNV . 0 5 hm5C_associated_SNPs_17908 0 0 1 0 1 AGRN chr1:984616 3'AG 984616 Downstream 79bp
chr2 201499608 201499608 1 + C T CESC 201499618 + 201499598 201499638 41 TGGATGTCTACGTGTCCACACAGTTTCCCAAATATATACAG TGGATGTCTATGTGTCCACACAGTTTCCCAAATATATACAG < 41bp 1 0.219705876431925 1 0.0526273846626282 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AOX1 ENSG00000138356 CDS Human protein_coding chr2:201499618 chr2:201499608 synonymous SNV . 0 11 hm5C_associated_SNPs_17909 0 0 0 0 2 AOX1 chr2:201499514 3'AG 201499514 Downstream 95bp
chr2 201499608 201499608 1 + C T CESC 201499618 + 201499598 201499638 41 TGGATGTCTACGTGTCCACACAGTTTCCCAAATATATACAG TGGATGTCTATGTGTCCACACAGTTTCCCAAATATATACAG < 41bp 1 0.219705876431925 1 0.0526273846626282 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AOX1 ENSG00000138356 CDS Human protein_coding chr2:201499618 chr2:201499608 synonymous SNV . 0 11 hm5C_associated_SNPs_17909 0 0 0 0 2 AOX1 chr2:201499638 5'GT 201499638 Upstream 31bp
chr7 101813778 101813778 1 + C T CESC 101813790 + 101813770 101813810 41 GCTCTCATCGGCCAATCACTCCCTCCAGCTGGCCTCACAGA GCTCTCATTGGCCAATCACTCCCTCCAGCTGGCCTCACAGA < 41bp 1 0.0561730563450632 1 0.543950140476227 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101813790 chr7:101813778 nonsynonymous SNV 0.972 1 9 hm5C_associated_SNPs_17910 0 0 1 0 2 CUX1 chr7:101813726 3'AG 101813726 Downstream 53bp
chr7 101813778 101813778 1 + C T CESC 101813790 + 101813770 101813810 41 GCTCTCATCGGCCAATCACTCCCTCCAGCTGGCCTCACAGA GCTCTCATTGGCCAATCACTCCCTCCAGCTGGCCTCACAGA < 41bp 1 0.0561730563450632 1 0.543950140476227 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101813790 chr7:101813778 nonsynonymous SNV 0.972 1 9 hm5C_associated_SNPs_17910 0 0 1 0 2 CUX1 chr7:101813830 5'GT 101813830 Upstream 53bp
chr9 135919210 135919210 1 + G A CESC 135919215 + 135919195 135919235 41 CTCCGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC CTCCGGCCCGAGAAGAAGGCCTTTTTCCACCAGGAGCTGCC < 41bp 1 0.043657987047937 1 0.0144115686416626 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919215 chr9:135919210 nonsynonymous SNV 0.778 1 16 hm5C_associated_SNPs_17911 0 0 1 0 1 GTF3C5 chr9:135919115 3'AG 135919115 Downstream 96bp
chr12 102517807 102517807 1 + G A CESC 102517803 + 102517783 102517823 41 GGCATTGCAGCTTTCTATGGCGGAGAACAACAAACAGGTTG GGCATTGCAGCTTTCTATGGCGGAAAACAACAAACAGGTTG < 41bp 1 0.781485753869965 1 0.5703005194664 experiment 0.43702849226007 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PARPBP ENSG00000185480 CDS Human protein_coding chr12:102517803 chr12:102517807 synonymous SNV . 0 25 hm5C_associated_SNPs_17912 0 0 1 0 1 PARPBP chr12:102517819 5'GT 102517819 Upstream 13bp
chr10 118314792 118314792 1 + C T CESC 118314776 + 118314756 118314796 41 CCAAATTTGTGGATGTAATTCACACGGATGGTGCCCCCATA CCAAATTTGTGGATGTAATTCACACGGATGGTGCCCTCATA < 41bp 1 0.601267346833972 1 0.116984367370605 experiment 0.797465306332056 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314776 chr10:118314792 nonsynonymous SNV 0.015 5 37 hm5C_associated_SNPs_17913 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 18bp
chr10 118314792 118314792 1 + C T CESC 118314780 + 118314760 118314800 41 ATTTGTGGATGTAATTCACACGGATGGTGCCCCCATAGTCC ATTTGTGGATGTAATTCACACGGATGGTGCCCTCATAGTCC < 41bp 1 0.683227902452531 1 0.172863692045212 experiment 0.633544195094937 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314780 chr10:118314792 nonsynonymous SNV 0.015 5 33 hm5C_associated_SNPs_17914 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 18bp
chr10 118314792 118314792 1 + C T CESC 118314789 + 118314769 118314809 41 TGTAATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGG TGTAATTCACACGGATGGTGCCCTCATAGTCCCCAATTTGG < 41bp 1 0.0631982773289515 1 0.0176915526390076 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314789 chr10:118314792 nonsynonymous SNV 0.015 5 24 hm5C_associated_SNPs_17915 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 18bp
chr10 118314792 118314792 1 + C T CESC 118314790 + 118314770 118314810 41 GTAATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGGG GTAATTCACACGGATGGTGCCCTCATAGTCCCCAATTTGGG < 41bp 1 0.234879376266019 1 0.031726062297821 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314790 chr10:118314792 nonsynonymous SNV 0.015 5 23 hm5C_associated_SNPs_17916 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 18bp
chr10 118314792 118314792 1 + C T CESC 118314791 + 118314771 118314811 41 TAATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGGGT TAATTCACACGGATGGTGCCCTCATAGTCCCCAATTTGGGT < 41bp 1 0.259837243973678 1 0.0830861032009125 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314791 chr10:118314792 nonsynonymous SNV 0.015 5 22 hm5C_associated_SNPs_17917 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 18bp
chr10 118314792 118314792 1 + C T CESC 118314793 + 118314773 118314813 41 ATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGGGTGA ATTCACACGGATGGTGCCCTCATAGTCCCCAATTTGGGTGA < 41bp 1 0.614062350948209 1 0.47121524810791 experiment 0.771875298103583 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314793 chr10:118314792 nonsynonymous SNV 0.015 5 20 hm5C_associated_SNPs_17918 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 18bp
chr10 118314792 118314792 1 + C T CESC 118314799 + 118314779 118314819 41 ACGGATGGTGCCCCCATAGTCCCCAATTTGGGTGAGTTCCT ACGGATGGTGCCCTCATAGTCCCCAATTTGGGTGAGTTCCT < 41bp 1 0.717123053924664 1 0.482988387346268 experiment 0.565753892150672 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314799 chr10:118314792 nonsynonymous SNV 0.015 5 14 hm5C_associated_SNPs_17919 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 18bp
chr10 118314792 118314792 1 + C T CESC 118314800 + 118314780 118314820 41 CGGATGGTGCCCCCATAGTCCCCAATTTGGGTGAGTTCCTC CGGATGGTGCCCTCATAGTCCCCAATTTGGGTGAGTTCCTC < 41bp 1 0.56554865588407 1 0.121490985155106 experiment 0.868902688231859 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314800 chr10:118314792 nonsynonymous SNV 0.015 5 13 hm5C_associated_SNPs_17920 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 18bp
chr10 118314792 118314792 1 + C T CESC 118314801 + 118314781 118314821 41 GGATGGTGCCCCCATAGTCCCCAATTTGGGTGAGTTCCTCA GGATGGTGCCCTCATAGTCCCCAATTTGGGTGAGTTCCTCA < 41bp 1 0.180280239027754 1 0.0393093824386597 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314801 chr10:118314792 nonsynonymous SNV 0.015 5 12 hm5C_associated_SNPs_17921 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 18bp
chr10 118314792 118314792 1 + C T CESC 118314802 + 118314782 118314822 41 GATGGTGCCCCCATAGTCCCCAATTTGGGTGAGTTCCTCAA GATGGTGCCCTCATAGTCCCCAATTTGGGTGAGTTCCTCAA < 41bp 1 0.331819426492777 1 0.213951170444489 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314802 chr10:118314792 nonsynonymous SNV 0.015 5 11 hm5C_associated_SNPs_17922 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 18bp
chr17 79425688 79425688 1 + C T CESC 79425696 + 79425676 79425716 41 GGCCACACGCAACGCCAAGGCCATCCTGGGGAAGGGCCGGA GGCCACACGCAATGCCAAGGCCATCCTGGGGAAGGGCCGGA < 41bp 1 0.0214983199225288 1 0.0587131679058075 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79425696 chr17:79425688 synonymous SNV . 0 13 hm5C_associated_SNPs_17926 0 0 0 0 2 BAHCC1 chr17:79425647 3'AG 79425647 Downstream 42bp
chr17 79425688 79425688 1 + C T CESC 79425696 + 79425676 79425716 41 GGCCACACGCAACGCCAAGGCCATCCTGGGGAAGGGCCGGA GGCCACACGCAATGCCAAGGCCATCCTGGGGAAGGGCCGGA < 41bp 1 0.0214983199225288 1 0.0587131679058075 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79425696 chr17:79425688 synonymous SNV . 0 13 hm5C_associated_SNPs_17926 0 0 0 0 2 BAHCC1 chr17:79425751 5'GT 79425751 Upstream 64bp
chr6 7572161 7572161 1 + C G CESC 7572176 + 7572156 7572196 41 ACAAGCAAGAAACATGGATGCTGATGGAGCTGCAGAAGATT ACAAGGAAGAAACATGGATGCTGATGGAGCTGCAGAAGATT < 41bp 1 0.212490727448096 1 0.111230611801147 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572176 chr6:7572161 nonsynonymous SNV 0.999 1 6 hm5C_associated_SNPs_17927 0 0 1 0 1 DSP chr6:7572075 3'AG 7572075 Downstream 87bp
chr19 10893714 10893714 1 + G C CESC 10893721 + 10893701 10893741 41 CTGGCAGCTGAGAGGAAGTTCTTCCTCTCCCACCCGGCCTA CTGGCAGCTGAGACGAAGTTCTTCCTCTCCCACCCGGCCTA < 41bp 1 0.162667422984035 1 0.101441025733948 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10893721 chr19:10893714 nonsynonymous SNV 0.992 4 14 hm5C_associated_SNPs_17928 0 0 1 0 1 DNM2 chr19:10893796 5'GT 10893796 Upstream 83bp
chr19 10893713 10893713 1 + A G CESC 10893721 + 10893701 10893741 41 CTGGCAGCTGAGAGGAAGTTCTTCCTCTCCCACCCGGCCTA CTGGCAGCTGAGGGGAAGTTCTTCCTCTCCCACCCGGCCTA < 41bp 1 0.251209109299259 1 0.395255118608475 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10893721 chr19:10893713 nonsynonymous SNV 0.986 4 13 hm5C_associated_SNPs_17929 0 0 1 0 1 DNM2 chr19:10893796 5'GT 10893796 Upstream 84bp
chr2 32613928 32613928 1 + G A CESC 32613943 + 32613923 32613963 41 GTGGCGTCCTCAGTGATGGACAGATTGTCTTACCTCTTACC GTGGCATCCTCAGTGATGGACAGATTGTCTTACCTCTTACC < 41bp 1 0.105331554406996 1 0.542723417282104 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32613943 chr2:32613928 synonymous SNV . 0 6 hm5C_associated_SNPs_17930 0 0 1 0 1 BIRC6 chr2:32614011 5'GT 32614011 Upstream 84bp
chr16 67578977 67578977 1 + T C CESC 67578992 + 67578972 67579012 41 CAGTATGGTGCCCGCCTCTCCCTGCGCCAGCCAGGCTTGGC CAGTACGGTGCCCGCCTCTCCCTGCGCCAGCCAGGCTTGGC < 41bp 1 0.0972813054472335 1 0.199976831674576 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578992 chr16:67578977 synonymous SNV . 0 6 hm5C_associated_SNPs_17931 0 0 1 0 1 RIPOR1 chr16:67579020 5'GT 67579020 Upstream 44bp
chr17 80684800 80684800 1 + C G CESC 80684806 + 80684786 80684826 41 AGCAGAGGATTCCTCTGGGCCGGTGATTTTTGACCCAGCTT AGCAGAGGATTCCTGTGGGCCGGTGATTTTTGACCCAGCTT < 41bp 1 0.417676056090803 1 0.502630770206451 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80684806 chr17:80684800 nonsynonymous SNV 0.752 2 15 hm5C_associated_SNPs_17932 0 0 1 0 1 FN3KRP chr17:80684709 3'AG 80684709 Downstream 92bp
chr11 67052376 67052376 1 + C T CESC 67052374 + 67052354 67052394 41 ACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAG ACATGTCCAAGATGGGCAACCCTTTCCTGACCCAGTGGCAG < 41bp 1 0.0195197601440768 1 0.0546295046806335 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052374 chr11:67052376 synonymous SNV . 0 23 hm5C_associated_SNPs_17933 0 0 1 0 2 GRK2 chr11:67052318 3'AG 67052318 Downstream 59bp
chr11 67052376 67052376 1 + C T CESC 67052374 + 67052354 67052394 41 ACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAG ACATGTCCAAGATGGGCAACCCTTTCCTGACCCAGTGGCAG < 41bp 1 0.0195197601440768 1 0.0546295046806335 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052374 chr11:67052376 synonymous SNV . 0 23 hm5C_associated_SNPs_17933 0 0 1 0 2 GRK2 chr11:67052454 5'GT 67052454 Upstream 79bp
chr22 29439407 29439407 1 + C T CESC 29439389 + 29439369 29439409 41 TCAACAAGCAGAAAGTGGCTCGAGCAAGGATCCAGCACCGC TCAACAAGCAGAAAGTGGCTCGAGCAAGGATCCAGCACTGC < 41bp 1 0.283121354215765 1 0.306246042251587 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29439389 chr22:29439407 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_17934 0 0 1 0 1 ZNRF3 chr22:29439418 5'GT 29439418 Upstream 12bp
chr19 49652956 49652956 1 + C T CESC 49652948 + 49652928 49652968 41 GAGCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAG GAGCCCTGGGCTCTCCGGGGCTCCCTCTTCGCAAGCTGCAG < 41bp 1 0.080185522046833 1 0.164226233959198 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652948 chr19:49652956 synonymous SNV . 0 29 hm5C_associated_SNPs_17935 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 20bp
chr19 49652956 49652956 1 + C T CESC 49652950 + 49652930 49652970 41 GCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCC GCCCTGGGCTCTCCGGGGCTCCCTCTTCGCAAGCTGCAGCC < 41bp 1 0.0793099395203202 1 0.0404552817344666 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652950 chr19:49652956 synonymous SNV . 0 27 hm5C_associated_SNPs_17936 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 20bp
chr19 49652956 49652956 1 + C T CESC 49652951 + 49652931 49652971 41 CCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCCA CCCTGGGCTCTCCGGGGCTCCCTCTTCGCAAGCTGCAGCCA < 41bp 1 0.0579903899916561 1 0.022081196308136 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652951 chr19:49652956 synonymous SNV . 0 26 hm5C_associated_SNPs_17937 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 20bp
chr19 49652956 49652956 1 + C T CESC 49652952 + 49652932 49652972 41 CCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCCAG CCTGGGCTCTCCGGGGCTCCCTCTTCGCAAGCTGCAGCCAG < 41bp 1 0.300305273070376 1 0.0893331170082092 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652952 chr19:49652956 synonymous SNV . 0 25 hm5C_associated_SNPs_17938 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 20bp
chr5 176733449 176733449 1 + G T CESC 176733429 + 176733409 176733449 41 GCCGTTCGCGACAGGCGAGGCCCCTTCCAAAACACTTGTTG GCCGTTCGCGACAGGCGAGGCCCCTTCCAAAACACTTGTTT < 41bp 1 0.156622719023616 1 0.0505133867263794 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176733429 chr5:176733449 stopgain 1.000 1 41 hm5C_associated_SNPs_17939 0 0 1 0 1 PRELID1 chr5:176733423 3'AG 176733423 Downstream 27bp
chr7 2416588 2416588 1 + G A CESC 2416581 + 2416561 2416601 41 TGGTGTGTCCCTGCCCTGGCCTAGGTGGACAACGCGTACTG TGGTGTGTCCCTGCCCTGGCCTAGGTGAACAACGCGTACTG < 41bp 1 0.544830563561651 1 0.47316038608551 experiment 0.910338872876698 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2416581 chr7:2416588 nonsynonymous SNV 0.922 4 28 hm5C_associated_SNPs_17940 0 0 1 0 1 EIF3B chr7:2416585 3'AG 2416585 Downstream 4bp
chr1 43827910 43827910 1 + A C CESC 43827926 + 43827906 43827946 41 TCTCAGGCCATGGCTTTGCACAGAACCAGCTAGTTATTTGG TCTCCGGCCATGGCTTTGCACAGAACCAGCTAGTTATTTGG < 41bp 1 0.67299879371149 1 0.178612470626831 experiment 0.65400241257702 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC20 ENSG00000117399 CDS Human protein_coding chr1:43827926 chr1:43827910 synonymous SNV . 0 5 hm5C_associated_SNPs_17941 0 0 1 0 2 CDC20 chr1:43827866 3'AG 43827866 Downstream 45bp
chr1 43827910 43827910 1 + A C CESC 43827926 + 43827906 43827946 41 TCTCAGGCCATGGCTTTGCACAGAACCAGCTAGTTATTTGG TCTCCGGCCATGGCTTTGCACAGAACCAGCTAGTTATTTGG < 41bp 1 0.67299879371149 1 0.178612470626831 experiment 0.65400241257702 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC20 ENSG00000117399 CDS Human protein_coding chr1:43827926 chr1:43827910 synonymous SNV . 0 5 hm5C_associated_SNPs_17941 0 0 1 0 2 CDC20 chr1:43827983 5'GT 43827983 Upstream 74bp
chr19 13248327 13248327 1 + G A CESC 13248325 + 13248305 13248345 41 AACAGCTGCGGCACCGGCATCCGCTCTTCTACCAACGATCC AACAGCTGCGGCACCGGCATCCACTCTTCTACCAACGATCC < 41bp 1 0.0864305062518871 1 0.0666761100292206 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NACC1 ENSG00000160877 CDS Human protein_coding chr19:13248325 chr19:13248327 nonsynonymous SNV 0.980 4 23 hm5C_associated_SNPs_17944 0 0 1 0 1 NACC1 chr19:13248292 3'AG 13248292 Downstream 36bp
chr1 8030977 8030977 1 + G A CESC 8030961 + 8030941 8030981 41 TTCTTTTCACTAGTCTGCTGCTGTGAAGGAGATACTGAAGG TTCTTTTCACTAGTCTGCTGCTGTGAAGGAGATACTAAAGG < 41bp 1 0.174544198359585 1 0.167784661054611 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PARK7 ENSG00000116288 CDS Human protein_coding chr1:8030961 chr1:8030977 synonymous SNV . 0 37 hm5C_associated_SNPs_17945 0 0 1 0 2 PARK7 chr1:8030954 3'AG 8030954 Downstream 24bp
chr1 8030977 8030977 1 + G A CESC 8030961 + 8030941 8030981 41 TTCTTTTCACTAGTCTGCTGCTGTGAAGGAGATACTGAAGG TTCTTTTCACTAGTCTGCTGCTGTGAAGGAGATACTAAAGG < 41bp 1 0.174544198359585 1 0.167784661054611 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PARK7 ENSG00000116288 CDS Human protein_coding chr1:8030961 chr1:8030977 synonymous SNV . 0 37 hm5C_associated_SNPs_17945 0 0 1 0 2 PARK7 chr1:8031023 5'GT 8031023 Upstream 47bp
chr1 8030977 8030977 1 + G A CESC 8030975 + 8030955 8030995 41 CTGCTGCTGTGAAGGAGATACTGAAGGAGCAGGAAAACCGG CTGCTGCTGTGAAGGAGATACTAAAGGAGCAGGAAAACCGG < 41bp 1 0.735811346828221 1 0.758861124515533 experiment 0.528377306343558 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PARK7 ENSG00000116288 CDS Human protein_coding chr1:8030975 chr1:8030977 synonymous SNV . 0 23 hm5C_associated_SNPs_17946 0 0 1 0 2 PARK7 chr1:8030954 3'AG 8030954 Downstream 24bp
chr1 8030977 8030977 1 + G A CESC 8030975 + 8030955 8030995 41 CTGCTGCTGTGAAGGAGATACTGAAGGAGCAGGAAAACCGG CTGCTGCTGTGAAGGAGATACTAAAGGAGCAGGAAAACCGG < 41bp 1 0.735811346828221 1 0.758861124515533 experiment 0.528377306343558 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PARK7 ENSG00000116288 CDS Human protein_coding chr1:8030975 chr1:8030977 synonymous SNV . 0 23 hm5C_associated_SNPs_17946 0 0 1 0 2 PARK7 chr1:8031023 5'GT 8031023 Upstream 47bp
chr14 102805188 102805188 1 + G T CESC 102805183 + 102805163 102805203 41 CATTAGGAATCACAGAATTCCTACGGAAGAAAGAAATACAC CATTAGGAATCACAGAATTCCTACGTAAGAAAGAAATACAC < 41bp 1 0.435784978331259 1 0.453522086143494 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102805183 chr14:102805188 synonymous SNV . 0 26 hm5C_associated_SNPs_17947 0 0 1 1 1 ZNF839 chr14:102805153 3'AG 102805153 Downstream 36bp
chr13 76430740 76430740 1 + C T CESC 76430734 + 76430714 76430754 41 TACTGCAACGACTGCTATCTCAGATTCAAATGTAAGAGAGC TACTGCAACGACTGCTATCTCAGATTTAAATGTAAGAGAGC < 41bp 1 0.374929475601992 1 0.674560844898224 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76430734 chr13:76430740 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_17949 0 0 1 0 1 LMO7 chr13:76430744 5'GT 76430744 Upstream 5bp
chr7 151818021 151818021 1 + G A CESC 151818003 + 151817983 151818023 41 CTCGCTCATCAGACCCGCCACGGCTCATGAAATGCCACGGG CTCGCTCATCAGACCCGCCACGGCTCATGAAATGCCACAGG < 41bp 1 0.40392153011075 1 0.0926429629325867 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151818003 chr7:151818021 nonsynonymous SNV 0.998 0 39 hm5C_associated_SNPs_17950 0 0 1 0 1 GALNT11 chr7:151818053 5'GT 151818053 Upstream 33bp
chr19 33202723 33202723 1 + G A CESC 33202731 + 33202711 33202751 41 GAAAAAAAGACTGAGGAAATCATGAAGGAAGGCAAGCAGTT GAAAAAAAGACTAAGGAAATCATGAAGGAAGGCAAGCAGTT < 41bp 1 0.51693569022322 1 0.271004915237427 experiment 0.966128619553559 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NUDT19 ENSG00000213965 CDS Human protein_coding chr19:33202731 chr19:33202723 nonsynonymous SNV 0.992 3 13 hm5C_associated_SNPs_17951 0 0 1 0 1 NUDT19 chr19:33202658 3'AG 33202658 Downstream 66bp
chr11 67069681 67069681 1 + G C CESC 67069687 + 67069667 67069707 41 GTCCACCCAGCTTTGAAGAGCAGCTGCGCCTGGCCCTGGAG GTCCACCCAGCTTTCAAGAGCAGCTGCGCCTGGCCCTGGAG < 41bp 1 0.492949964789194 1 0.354198336601257 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANKRD13D ENSG00000172932 CDS Human protein_coding chr11:67069687 chr11:67069681 nonsynonymous SNV 0.996 2 15 hm5C_associated_SNPs_17952 0 0 1 0 1 ANKRD13D chr11:67069590 3'AG 67069590 Downstream 92bp
chr13 111287908 111287908 1 + C T CESC 111287910 + 111287890 111287930 41 GTGGTCCAGAAAGGAGAGCGCGACATCCTCTCCAACGGCCA GTGGTCCAGAAAGGAGAGTGCGACATCCTCTCCAACGGCCA < 41bp 1 0.735590439190307 1 0.440399020910263 experiment 0.528819121619386 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NAXD ENSG00000213995 CDS Human protein_coding chr13:111287910 chr13:111287908 nonsynonymous SNV 0.011 0 19 hm5C_associated_SNPs_17953 0 0 1 0 2 NAXD chr13:111287815 3'AG 111287815 Downstream 94bp
chr13 111287908 111287908 1 + C T CESC 111287910 + 111287890 111287930 41 GTGGTCCAGAAAGGAGAGCGCGACATCCTCTCCAACGGCCA GTGGTCCAGAAAGGAGAGTGCGACATCCTCTCCAACGGCCA < 41bp 1 0.735590439190307 1 0.440399020910263 experiment 0.528819121619386 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NAXD ENSG00000213995 CDS Human protein_coding chr13:111287910 chr13:111287908 nonsynonymous SNV 0.011 0 19 hm5C_associated_SNPs_17953 0 0 1 0 2 NAXD chr13:111287820 3'AG 111287820 Downstream 89bp
chr1 156096702 156096702 1 + C G CESC 156096700 + 156096680 156096720 41 GACACGGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGG GACACGGGCGAAGCCAGGGTCTGCCCTGTGAGCACTAGAGG < 41bp 1 0.251731053712879 1 0.138036549091339 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096700 chr1:156096702 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_17955 0 0 0 0 1 LMNA chr1:156096706 5'GT 156096706 Upstream 5bp
chr1 156096702 156096702 1 + C G CESC 156096703 + 156096683 156096723 41 ACGGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATT ACGGGCGAAGCCAGGGTCTGCCCTGTGAGCACTAGAGGATT < 41bp 1 0.10662566000491 1 0.0770980715751648 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096703 chr1:156096702 nonsynonymous SNV 0.997 0 20 hm5C_associated_SNPs_17956 0 0 0 0 1 LMNA chr1:156096706 5'GT 156096706 Upstream 5bp
chr1 156096702 156096702 1 + C G CESC 156096704 + 156096684 156096724 41 CGGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTT CGGGCGAAGCCAGGGTCTGCCCTGTGAGCACTAGAGGATTT < 41bp 1 0.154500755294149 1 0.11032509803772 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096704 chr1:156096702 nonsynonymous SNV 0.997 0 19 hm5C_associated_SNPs_17957 0 0 0 0 1 LMNA chr1:156096706 5'GT 156096706 Upstream 5bp
chr1 156096702 156096702 1 + C G CESC 156096705 + 156096685 156096725 41 GGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTTC GGGCGAAGCCAGGGTCTGCCCTGTGAGCACTAGAGGATTTC < 41bp 1 0.387013724891991 1 0.132117003202438 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096705 chr1:156096702 nonsynonymous SNV 0.997 0 18 hm5C_associated_SNPs_17958 0 0 0 0 1 LMNA chr1:156096706 5'GT 156096706 Upstream 5bp
chr2 236817440 236817440 1 + T A CESC 236817455 + 236817435 236817475 41 GAAAGTCCCAGGGAAGAGGCCACCCCGAGCCACGTCAGCCT GAAAGACCCAGGGAAGAGGCCACCCCGAGCCACGTCAGCCT < 41bp 1 0.115909746949317 1 0.0604491531848907 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236817455 chr2:236817440 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_17959 0 0 1 0 1 AGAP1 chr2:236817382 3'AG 236817382 Downstream 59bp
chr2 74425844 74425844 1 + C T CESC 74425852 + 74425832 74425872 41 TCCCTTCGCCTTCGCCCTTTCCACCTCGCGGCAGTTCGGTA TCCCTTCGCCTTTGCCCTTTCCACCTCGCGGCAGTTCGGTA < 41bp 1 0.242536104553837 1 0.253882199525833 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTHFD2 ENSG00000065911 CDS Human protein_coding chr2:74425852 chr2:74425844 nonsynonymous SNV 0.001 0 13 hm5C_associated_SNPs_17960 0 0 1 0 1 MTHFD2 chr2:74425869 5'GT 74425869 Upstream 26bp
chr12 57970115 57970115 1 + C T CESC 57970126 + 57970106 57970146 41 GCCCGGCTCCGGGACGAGATCAACGAGAAGCAGAAGACCAT GCCCGGCTCTGGGACGAGATCAACGAGAAGCAGAAGACCAT < 41bp 1 0.638578428924986 1 0.518194794654846 experiment 0.722843142150027 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF5A ENSG00000155980 CDS Human protein_coding chr12:57970126 chr12:57970115 nonsynonymous SNV 0.997 5 10 hm5C_associated_SNPs_17961 0 0 1 0 1 KIF5A chr12:57970052 3'AG 57970052 Downstream 64bp
chr19 50338793 50338793 1 + G T CESC 50338810 + 50338790 50338830 41 GATGGGGGGACAGCAGGCACCCCCAGGGCTGGGGCCCATTC GATTGGGGGACAGCAGGCACCCCCAGGGCTGGGGCCCATTC < 41bp 1 0.691571785885578 1 0.390718698501587 experiment 0.616856428228845 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50338810 chr19:50338793 nonsynonymous SNV 0.993 2 4 hm5C_associated_SNPs_17962 0 0 1 0 2 MED25 chr19:50338791 3'AG 50338791 Downstream 3bp
chr19 50338793 50338793 1 + G T CESC 50338810 + 50338790 50338830 41 GATGGGGGGACAGCAGGCACCCCCAGGGCTGGGGCCCATTC GATTGGGGGACAGCAGGCACCCCCAGGGCTGGGGCCCATTC < 41bp 1 0.691571785885578 1 0.390718698501587 experiment 0.616856428228845 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50338810 chr19:50338793 nonsynonymous SNV 0.993 2 4 hm5C_associated_SNPs_17962 0 0 1 0 2 MED25 chr19:50338862 5'GT 50338862 Upstream 70bp
chr19 50338793 50338793 1 + G T CESC 50338812 + 50338792 50338832 41 TGGGGGGACAGCAGGCACCCCCAGGGCTGGGGCCCATTCTG TTGGGGGACAGCAGGCACCCCCAGGGCTGGGGCCCATTCTG < 41bp 1 0.488185600834298 1 0.812122583389282 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50338812 chr19:50338793 nonsynonymous SNV 0.993 2 2 hm5C_associated_SNPs_17963 0 0 1 0 2 MED25 chr19:50338791 3'AG 50338791 Downstream 3bp
chr19 50338793 50338793 1 + G T CESC 50338812 + 50338792 50338832 41 TGGGGGGACAGCAGGCACCCCCAGGGCTGGGGCCCATTCTG TTGGGGGACAGCAGGCACCCCCAGGGCTGGGGCCCATTCTG < 41bp 1 0.488185600834298 1 0.812122583389282 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50338812 chr19:50338793 nonsynonymous SNV 0.993 2 2 hm5C_associated_SNPs_17963 0 0 1 0 2 MED25 chr19:50338862 5'GT 50338862 Upstream 70bp
chr5 154330464 154330464 1 + C T CESC 154330472 + 154330452 154330492 41 AAATTGTTTATCCTCCACAACTGCCTGGAGAACCTCGGAGA AAATTGTTTATCTTCCACAACTGCCTGGAGAACCTCGGAGA < 41bp 1 0.457394241984922 1 0.0388093292713165 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MRPL22 ENSG00000082515 CDS Human protein_coding chr5:154330472 chr5:154330464 nonsynonymous SNV 0.792 4 13 hm5C_associated_SNPs_17966 0 0 1 0 1 MRPL22 chr5:154330498 5'GT 154330498 Upstream 35bp
chrX 64956699 64956699 1 + G A CESC 64956685 + 64956665 64956705 41 TGGAAAATGAGAAGAAGAAGCGTGAAATGGCAGAGAAGGAG TGGAAAATGAGAAGAAGAAGCGTGAAATGGCAGAAAAGGAG < 41bp 1 0.506666554817773 1 0.635730504989624 experiment 0.986666890364454 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956685 chrX:64956699 synonymous SNV . 0 35 hm5C_associated_SNPs_17972 0 0 1 0 2 MSN chrX:64956657 3'AG 64956657 Downstream 43bp
chrX 64956699 64956699 1 + G A CESC 64956685 + 64956665 64956705 41 TGGAAAATGAGAAGAAGAAGCGTGAAATGGCAGAGAAGGAG TGGAAAATGAGAAGAAGAAGCGTGAAATGGCAGAAAAGGAG < 41bp 1 0.506666554817773 1 0.635730504989624 experiment 0.986666890364454 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956685 chrX:64956699 synonymous SNV . 0 35 hm5C_associated_SNPs_17972 0 0 1 0 2 MSN chrX:64956787 5'GT 64956787 Upstream 89bp
chrX 64956699 64956699 1 + G A CESC 64956695 + 64956675 64956715 41 GAAGAAGAAGCGTGAAATGGCAGAGAAGGAGAAAGAGAAGA GAAGAAGAAGCGTGAAATGGCAGAAAAGGAGAAAGAGAAGA < 41bp 1 0.655810121346666 1 0.372578322887421 experiment 0.688379757306667 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956695 chrX:64956699 synonymous SNV . 0 25 hm5C_associated_SNPs_17973 0 0 1 0 2 MSN chrX:64956657 3'AG 64956657 Downstream 43bp
chrX 64956699 64956699 1 + G A CESC 64956695 + 64956675 64956715 41 GAAGAAGAAGCGTGAAATGGCAGAGAAGGAGAAAGAGAAGA GAAGAAGAAGCGTGAAATGGCAGAAAAGGAGAAAGAGAAGA < 41bp 1 0.655810121346666 1 0.372578322887421 experiment 0.688379757306667 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956695 chrX:64956699 synonymous SNV . 0 25 hm5C_associated_SNPs_17973 0 0 1 0 2 MSN chrX:64956787 5'GT 64956787 Upstream 89bp
chr11 9459820 9459820 1 + G A CESC 9459830 + 9459810 9459850 41 AGCTGAAGATGATGATGAAACCGGTAAGGGATTTTCAATGG AGCTGAAGATAATGATGAAACCGGTAAGGGATTTTCAATGG < 41bp 1 0.527954115717276 1 0.169523477554321 experiment 0.944091768565449 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9459830 chr11:9459820 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_17975 0 0 1 0 1 IPO7 chr11:9459832 5'GT 9459832 Upstream 13bp
chr11 9459820 9459820 1 + G A CESC 9459831 + 9459811 9459851 41 GCTGAAGATGATGATGAAACCGGTAAGGGATTTTCAATGGA GCTGAAGATAATGATGAAACCGGTAAGGGATTTTCAATGGA < 41bp 1 0.681731894193199 1 0.386144578456879 experiment 0.636536211613601 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9459831 chr11:9459820 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_17976 0 0 1 0 1 IPO7 chr11:9459832 5'GT 9459832 Upstream 13bp
chr5 149755822 149755822 1 + G A CESC 149755829 + 149755809 149755849 41 CCAGAGACCAGCAGAGGATTCTTCAAGCAGTGAGGAATCAG CCAGAGACCAGCAAAGGATTCTTCAAGCAGTGAGGAATCAG < 41bp 1 0.307290933964142 1 0.183275938034058 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149755829 chr5:149755822 nonsynonymous SNV 0.021 1 14 hm5C_associated_SNPs_17977 0 0 1 0 1 TCOF1 chr5:149755893 5'GT 149755893 Upstream 72bp
chr5 149755822 149755822 1 + G A CESC 149755836 + 149755816 149755856 41 CCAGCAGAGGATTCTTCAAGCAGTGAGGAATCAGATAGTGA CCAGCAAAGGATTCTTCAAGCAGTGAGGAATCAGATAGTGA < 41bp 1 0.29355327080066 1 0.348909080028534 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149755836 chr5:149755822 nonsynonymous SNV 0.021 1 7 hm5C_associated_SNPs_17978 0 0 1 0 1 TCOF1 chr5:149755893 5'GT 149755893 Upstream 72bp
chr1 43893266 43893266 1 + C T CESC 43893251 + 43893231 43893271 41 CACCATTCCGTCGAGACTTACAGGCTTACGCTGGGCGTCAG CACCATTCCGTCGAGACTTACAGGCTTACGCTGGGTGTCAG < 41bp 1 0.257343007727663 1 0.864455342292786 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43893251 chr1:43893266 nonsynonymous SNV 0.962 2 36 hm5C_associated_SNPs_17981 0 0 1 0 1 SZT2 chr1:43893201 3'AG 43893201 Downstream 66bp
chr2 216197200 216197200 1 + G A CESC 216197204 + 216197184 216197224 41 TTTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCC TTTAGGTATTCCAGCCACTGCCTCTTTCAAACATGTCAGCC < 41bp 1 0.0589710248876543 1 0.18862783908844 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216197204 chr2:216197200 nonsynonymous SNV 0.740 4 17 hm5C_associated_SNPs_17982 0 0 1 0 2 ATIC chr2:216197105 3'AG 216197105 Downstream 96bp
chr2 216197200 216197200 1 + G A CESC 216197204 + 216197184 216197224 41 TTTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCC TTTAGGTATTCCAGCCACTGCCTCTTTCAAACATGTCAGCC < 41bp 1 0.0589710248876543 1 0.18862783908844 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216197204 chr2:216197200 nonsynonymous SNV 0.740 4 17 hm5C_associated_SNPs_17982 0 0 1 0 2 ATIC chr2:216197230 5'GT 216197230 Upstream 31bp
chr2 216197200 216197200 1 + G A CESC 216197205 + 216197185 216197225 41 TTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCCC TTAGGTATTCCAGCCACTGCCTCTTTCAAACATGTCAGCCC < 41bp 1 0.354662694719638 1 0.347110629081726 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216197205 chr2:216197200 nonsynonymous SNV 0.740 4 16 hm5C_associated_SNPs_17983 0 0 1 0 2 ATIC chr2:216197105 3'AG 216197105 Downstream 96bp
chr2 216197200 216197200 1 + G A CESC 216197205 + 216197185 216197225 41 TTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCCC TTAGGTATTCCAGCCACTGCCTCTTTCAAACATGTCAGCCC < 41bp 1 0.354662694719638 1 0.347110629081726 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216197205 chr2:216197200 nonsynonymous SNV 0.740 4 16 hm5C_associated_SNPs_17983 0 0 1 0 2 ATIC chr2:216197230 5'GT 216197230 Upstream 31bp
chr8 124787458 124787458 1 + C A CESC 124787439 + 124787419 124787459 41 TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGCT TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGAT < 41bp 1 0.429162480477853 1 0.171693652868271 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787439 chr8:124787458 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_17984 0 0 0 0 2 FAM91A1 chr8:124787387 3'AG 124787387 Downstream 72bp
chr8 124787458 124787458 1 + C A CESC 124787439 + 124787419 124787459 41 TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGCT TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGAT < 41bp 1 0.429162480477853 1 0.171693652868271 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787439 chr8:124787458 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_17984 0 0 0 0 2 FAM91A1 chr8:124787538 5'GT 124787538 Upstream 81bp
chr12 110456186 110456186 1 + G A CESC 110456173 + 110456153 110456193 41 CCTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATC CCTTGGTTTCTAGAATATGCCCAAATGATGTCTATCGCATC < 41bp 1 0.38174768844194 1 0.610100746154785 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110456173 chr12:110456186 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_17985 0 0 1 0 1 ANKRD13A chr12:110456150 3'AG 110456150 Downstream 37bp
chr12 110456186 110456186 1 + G A CESC 110456174 + 110456154 110456194 41 CTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATCT CTTGGTTTCTAGAATATGCCCAAATGATGTCTATCGCATCT < 41bp 1 0.335036996029967 1 0.149074465036392 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110456174 chr12:110456186 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_17986 0 0 1 0 1 ANKRD13A chr12:110456150 3'AG 110456150 Downstream 37bp
chr16 57787136 57787136 1 + C T CESC 57787133 + 57787113 57787153 41 CCAACCCCAGCGCCCCCCTCCGGCGCATCTATGAGCGGCCC CCAACCCCAGCGCCCCCCTCCGGTGCATCTATGAGCGGCCC < 41bp 1 0.424124201983574 1 0.847978293895721 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57787133 chr16:57787136 nonsynonymous SNV 0.109 4 24 hm5C_associated_SNPs_17987 0 0 0 0 1 KATNB1 chr16:57787179 5'GT 57787179 Upstream 44bp
chr12 57604635 57604635 1 + G A CESC 57604652 + 57604632 57604672 41 CCCGGCTTCCTGGGCGACCGCTGCCAGTACCGTGAGTGAGC CCCAGCTTCCTGGGCGACCGCTGCCAGTACCGTGAGTGAGC < 41bp 1 0.159065700549351 1 0.287433683872223 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57604652 chr12:57604635 nonsynonymous SNV 0.994 0 4 hm5C_associated_SNPs_17988 0 0 1 0 1 LRP1 chr12:57604662 5'GT 57604662 Upstream 28bp
chr2 95950804 95950804 1 + C A CESC 95950821 + 95950801 95950841 41 GACCTGGAGGCCCTGCAGAGCAGTGGGCTTCAGCGCATCCA GACATGGAGGCCCTGCAGAGCAGTGGGCTTCAGCGCATCCA < 41bp 1 0.560652774661136 1 0.424722671508789 experiment 0.878694450677728 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PROM2 ENSG00000155066 CDS Human protein_coding chr2:95950821 chr2:95950804 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_17989 0 0 0 0 2 PROM2 chr2:95950717 3'AG 95950717 Downstream 88bp
chr2 95950804 95950804 1 + C A CESC 95950821 + 95950801 95950841 41 GACCTGGAGGCCCTGCAGAGCAGTGGGCTTCAGCGCATCCA GACATGGAGGCCCTGCAGAGCAGTGGGCTTCAGCGCATCCA < 41bp 1 0.560652774661136 1 0.424722671508789 experiment 0.878694450677728 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PROM2 ENSG00000155066 CDS Human protein_coding chr2:95950821 chr2:95950804 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_17989 0 0 0 0 2 PROM2 chr2:95950863 5'GT 95950863 Upstream 60bp
chr16 85839345 85839345 1 + G A CESC 85839335 + 85839315 85839355 41 AATGGCTGTCCTCTCTGCCCCCAGTGTATCGCATTAAGTTC AATGGCTGTCCTCTCTGCCCCCAGTGTATCACATTAAGTTC < 41bp 1 0.458853625438369 1 0.411425173282623 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control COX4I1 ENSG00000131143 CDS Human protein_coding chr16:85839335 chr16:85839345 nonsynonymous SNV 0.645 1 31 hm5C_associated_SNPs_17990 0 0 1 0 1 COX4I1 chr16:85839339 3'AG 85839339 Downstream 7bp
chr16 85839345 85839345 1 + G A CESC 85839336 + 85839316 85839356 41 ATGGCTGTCCTCTCTGCCCCCAGTGTATCGCATTAAGTTCA ATGGCTGTCCTCTCTGCCCCCAGTGTATCACATTAAGTTCA < 41bp 1 0.479599193348123 1 0.782682061195374 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control COX4I1 ENSG00000131143 CDS Human protein_coding chr16:85839336 chr16:85839345 nonsynonymous SNV 0.645 1 30 hm5C_associated_SNPs_17991 0 0 1 0 1 COX4I1 chr16:85839339 3'AG 85839339 Downstream 7bp
chr14 64676723 64676723 1 + C T CESC 64676732 + 64676712 64676752 41 AGCAGTACCGGCGGCTGGCCCGGGAGAACCGCACAGACACG AGCAGTACCGGTGGCTGGCCCGGGAGAACCGCACAGACACG < 41bp 1 0.567269152838163 1 0.972267210483551 experiment 0.865461694323674 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64676732 chr14:64676723 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_17992 0 0 0 0 2 SYNE2 chr14:64676660 3'AG 64676660 Downstream 64bp
chr14 64676723 64676723 1 + C T CESC 64676732 + 64676712 64676752 41 AGCAGTACCGGCGGCTGGCCCGGGAGAACCGCACAGACACG AGCAGTACCGGTGGCTGGCCCGGGAGAACCGCACAGACACG < 41bp 1 0.567269152838163 1 0.972267210483551 experiment 0.865461694323674 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64676732 chr14:64676723 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_17992 0 0 0 0 2 SYNE2 chr14:64676669 3'AG 64676669 Downstream 55bp
chr19 4954449 4954449 1 + G A CESC 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGGGGAGCTTCGCGTCCCCCAGGACGGGCAAGG < 41bp 1 0.242879405246744 1 0.402223080396652 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954449 . 0.008 0 14 hm5C_associated_SNPs_17997 0 0 0 0 2 UHRF1 chr19:4954362 3'AG 4954362 Downstream 88bp
chr19 4954449 4954449 1 + G A CESC 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGGGGAGCTTCGCGTCCCCCAGGACGGGCAAGG < 41bp 1 0.242879405246744 1 0.402223080396652 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954449 . 0.008 0 14 hm5C_associated_SNPs_17997 0 0 0 0 2 UHRF1 chr19:4954500 5'GT 4954500 Upstream 52bp
chr19 4954449 4954449 1 + G A CESC 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGGGGAGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA < 41bp 1 0.546371090563608 1 0.301772356033325 experiment 0.907257818872784 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954449 . 0.008 0 10 hm5C_associated_SNPs_17998 0 0 0 0 2 UHRF1 chr19:4954362 3'AG 4954362 Downstream 88bp
chr19 4954449 4954449 1 + G A CESC 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGGGGAGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA < 41bp 1 0.546371090563608 1 0.301772356033325 experiment 0.907257818872784 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954449 . 0.008 0 10 hm5C_associated_SNPs_17998 0 0 0 0 2 UHRF1 chr19:4954500 5'GT 4954500 Upstream 52bp
chr19 14024306 14024306 1 + G A CESC 14024290 + 14024270 14024310 41 GGACATCCCGCCGCCAGTGGCCATAGGAAAAGGCCCGGCGT GGACATCCCGCCGCCAGTGGCCATAGGAAAAGGCCCAGCGT < 41bp 1 0.240844566072751 1 0.160209178924561 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14024290 chr19:14024306 synonymous SNV . 0 37 hm5C_associated_SNPs_17999 0 0 0 0 1 CC2D1A chr19:14024217 3'AG 14024217 Downstream 90bp
chr11 70253459 70253459 1 + C T CESC 70253474 + 70253454 70253494 41 GGGGGCCGATGACTGGGAGACCGACCCTGATTTTGTGGTAG GGGGGTCGATGACTGGGAGACCGACCCTGATTTTGTGGTAG < 41bp 1 0.152758183534367 1 0.222904741764069 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70253474 chr11:70253459 nonsynonymous SNV 0.102 1 6 hm5C_associated_SNPs_18000 0 0 1 0 2 CTTN chr11:70253404 3'AG 70253404 Downstream 56bp
chr11 70253459 70253459 1 + C T CESC 70253474 + 70253454 70253494 41 GGGGGCCGATGACTGGGAGACCGACCCTGATTTTGTGGTAG GGGGGTCGATGACTGGGAGACCGACCCTGATTTTGTGGTAG < 41bp 1 0.152758183534367 1 0.222904741764069 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70253474 chr11:70253459 nonsynonymous SNV 0.102 1 6 hm5C_associated_SNPs_18000 0 0 1 0 2 CTTN chr11:70253490 5'GT 70253490 Upstream 32bp
chrX 103434381 103434381 1 + G A CESC 103434382 + 103434362 103434402 41 GGAAGGAGAGGCTCAGTGGGCTCTTCCTTAACGAAGAGGTG GGAAGGAGAGGCTCAGTGGACTCTTCCTTAACGAAGAGGTG < 41bp 1 0.297029303916124 1 0.0946494936943054 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAM199X ENSG00000123575 CDS Human protein_coding chrX:103434382 chrX:103434381 synonymous SNV . 0 20 hm5C_associated_SNPs_18005 0 0 1 0 1 FAM199X chrX:103434289 3'AG 103434289 Downstream 93bp
chr14 105927198 105927198 1 + G A CESC 105927186 + 105927166 105927206 41 TGCCGCAGGGCGGGCCCGTGCTCTGCAGGGACGAGATGGAG TGCCGCAGGGCGGGCCCGTGCTCTGCAGGGACAAGATGGAG < 41bp 1 0.461235431947589 1 0.271026611328125 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105927186 chr14:105927198 nonsynonymous SNV 0.991 4 33 hm5C_associated_SNPs_18006 0 0 1 0 1 MTA1 chr14:105927102 3'AG 105927102 Downstream 97bp
chr3 184042681 184042681 1 + C T CESC 184042675 + 184042655 184042695 41 GTGAATGGCAGGCAGAGGAACGAGGACGCCTGAAGGAAGAG GTGAATGGCAGGCAGAGGAACGAGGATGCCTGAAGGAAGAG < 41bp 1 0.660753613191552 1 0.474718689918518 experiment 0.678492773616896 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042675 chr3:184042681 nonsynonymous SNV 0.978 4 27 hm5C_associated_SNPs_18009 0 0 1 0 1 EIF4G1 chr3:184042666 3'AG 184042666 Downstream 16bp
chrX 70354262 70354262 1 + C T CESC 70354269 + 70354249 70354289 41 ACCACGGAGTGGGCCATGCTCCTCCTGGAGATCATCATCAG ACCACGGAGTGGGTCATGCTCCTCCTGGAGATCATCATCAG < 41bp 1 0.137934118463622 1 0.311103254556656 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70354269 chrX:70354262 nonsynonymous SNV 0.954 3 14 hm5C_associated_SNPs_18011 0 0 0 0 2 MED12 chrX:70354207 3'AG 70354207 Downstream 56bp
chrX 70354262 70354262 1 + C T CESC 70354269 + 70354249 70354289 41 ACCACGGAGTGGGCCATGCTCCTCCTGGAGATCATCATCAG ACCACGGAGTGGGTCATGCTCCTCCTGGAGATCATCATCAG < 41bp 1 0.137934118463622 1 0.311103254556656 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70354269 chrX:70354262 nonsynonymous SNV 0.954 3 14 hm5C_associated_SNPs_18011 0 0 0 0 2 MED12 chrX:70354316 5'GT 70354316 Upstream 55bp
chr22 18979457 18979457 1 + C T CESC 18979466 + 18979446 18979486 41 AGATGGAGAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAAC AGATGGAGAAGTGAACCAAGCCTGTCTGTGTGTTCTGGAAC < 41bp 1 0.104445117669587 1 0.0521607100963593 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979466 chr22:18979457 . . 0 12 hm5C_associated_SNPs_18012 0 0 0 0 1 DGCR5 chr22:18979530 5'GT 18979530 Upstream 74bp
chr19 17313014 17313014 1 + C T CESC 17313031 + 17313011 17313051 41 GAGCGTGGCCAGAAGGACACCAACCTGGTCCTCAACCTCTT GAGTGTGGCCAGAAGGACACCAACCTGGTCCTCAACCTCTT < 41bp 1 0.150402262951755 1 0.0667835175991058 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17313031 chr19:17313014 nonsynonymous SNV 0.001 3 4 hm5C_associated_SNPs_18018 0 0 1 0 2 MYO9B chr19:17312939 3'AG 17312939 Downstream 76bp
chr19 17313014 17313014 1 + C T CESC 17313031 + 17313011 17313051 41 GAGCGTGGCCAGAAGGACACCAACCTGGTCCTCAACCTCTT GAGTGTGGCCAGAAGGACACCAACCTGGTCCTCAACCTCTT < 41bp 1 0.150402262951755 1 0.0667835175991058 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17313031 chr19:17313014 nonsynonymous SNV 0.001 3 4 hm5C_associated_SNPs_18018 0 0 1 0 2 MYO9B chr19:17313112 5'GT 17313112 Upstream 99bp
chr7 77539627 77539627 1 + A G CESC 77539642 + 77539622 77539662 41 AGATAACACACAAGAGGGAGCAGTTCAGAACCACGGTACAA AGATAGCACACAAGAGGGAGCAGTTCAGAACCACGGTACAA < 41bp 1 0.252283937772403 1 0.171985298395157 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHTF2 ENSG00000006576 CDS Human protein_coding chr7:77539642 chr7:77539627 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_18019 0 0 1 0 1 PHTF2 chr7:77539562 3'AG 77539562 Downstream 66bp
chr16 1398426 1398426 1 + G A CESC 1398411 + 1398391 1398431 41 CTGAGGAGGCTGGAAGGCCGCACCAGCAAGGAGGCGCAGGA CTGAGGAGGCTGGAAGGCCGCACCAGCAAGGAGGCACAGGA < 41bp 1 0.666151154798702 1 0.33703225851059 experiment 0.667697690402596 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1398411 chr16:1398426 synonymous SNV . 0 36 hm5C_associated_SNPs_18020 0 0 0 0 1 BAIAP3 chr16:1398380 3'AG 1398380 Downstream 47bp
chr19 13923943 13923943 1 + G A CESC 13923951 + 13923931 13923971 41 ACTCCTTCGACGGCCCCAGCCTGCAGCCCACCATGGCCCCC ACTCCTTCGACGACCCCAGCCTGCAGCCCACCATGGCCCCC < 41bp 1 0.774085149308077 1 0.768786907196045 experiment 0.451829701383847 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13923951 chr19:13923943 nonsynonymous SNV 0.457 0 13 hm5C_associated_SNPs_18021 0 0 0 0 1 ZSWIM4 chr19:13923978 5'GT 13923978 Upstream 36bp
chr16 15675129 15675129 1 + C T CESC 15675136 + 15675116 15675156 41 TAATCCAGAAGATCCACAAACTGGTGCAGAAGAGAGACTTC TAATCCAGAAGATTCACAAACTGGTGCAGAAGAGAGACTTC < 41bp 1 0.64199593341337 1 0.385537892580032 experiment 0.716008133173261 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control C16orf45 ENSG00000166780 CDS Human protein_coding chr16:15675136 chr16:15675129 synonymous SNV . 0 14 hm5C_associated_SNPs_18022 0 0 0 0 2 C16orf45 chr16:15675074 3'AG 15675074 Downstream 56bp
chr16 15675129 15675129 1 + C T CESC 15675136 + 15675116 15675156 41 TAATCCAGAAGATCCACAAACTGGTGCAGAAGAGAGACTTC TAATCCAGAAGATTCACAAACTGGTGCAGAAGAGAGACTTC < 41bp 1 0.64199593341337 1 0.385537892580032 experiment 0.716008133173261 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control C16orf45 ENSG00000166780 CDS Human protein_coding chr16:15675136 chr16:15675129 synonymous SNV . 0 14 hm5C_associated_SNPs_18022 0 0 0 0 2 C16orf45 chr16:15675188 5'GT 15675188 Upstream 60bp
chr2 182766569 182766569 1 + G A CESC 182766571 + 182766551 182766591 41 TTCTCAAGTCTCCGGGACGCCCCTGCAGAGAATTGGAAGTA TTCTCAAGTCTCCGGGACACCCCTGCAGAGAATTGGAAGTA < 41bp 1 0.293017152555715 1 0.0407386422157288 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182766571 chr2:182766569 synonymous SNV . 0 19 hm5C_associated_SNPs_18023 0 0 1 0 1 SSFA2 chr2:182766493 3'AG 182766493 Downstream 77bp
chr16 84872301 84872301 1 + G A CESC 84872297 + 84872277 84872317 41 TCCTCATGCTGCACAACAAGCTTCGGGGCCAGGTGCAGCCT TCCTCATGCTGCACAACAAGCTTCAGGGCCAGGTGCAGCCT < 41bp 1 0.631210835839298 1 0.187900990247726 experiment 0.737578328321404 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84872297 chr16:84872301 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_18025 0 0 0 0 1 CRISPLD2 chr16:84872341 5'GT 84872341 Upstream 41bp
chr5 169018126 169018126 1 + C T CESC 169018123 + 169018103 169018143 41 CGAATGTTAGAAAGTTTGAGCTGCGAATGTGAAGCTATTAA CGAATGTTAGAAAGTTTGAGCTGTGAATGTGAAGCTATTAA < 41bp 1 0.22241701004605 1 0.11500209569931 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169018123 chr5:169018126 synonymous SNV . 0 24 hm5C_associated_SNPs_18026 0 0 1 0 1 SPDL1 chr5:169018207 5'GT 169018207 Upstream 82bp
chr7 4260925 4260925 1 + C T CESC 4260905 + 4260885 4260925 41 CCTAGAGATGTCCTGGTCACCAAGTCCGCCTCTGAACTGAC CCTAGAGATGTCCTGGTCACCAAGTCCGCCTCTGAACTGAT < 41bp 1 0.201783286013024 1 0.574415922164917 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SDK1 ENSG00000146555 CDS Human protein_coding chr7:4260905 chr7:4260925 nonsynonymous SNV 0.745 3 41 hm5C_associated_SNPs_18027 0 0 0 0 2 SDK1 chr7:4260871 3'AG 4260871 Downstream 55bp
chr7 4260925 4260925 1 + C T CESC 4260905 + 4260885 4260925 41 CCTAGAGATGTCCTGGTCACCAAGTCCGCCTCTGAACTGAC CCTAGAGATGTCCTGGTCACCAAGTCCGCCTCTGAACTGAT < 41bp 1 0.201783286013024 1 0.574415922164917 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SDK1 ENSG00000146555 CDS Human protein_coding chr7:4260905 chr7:4260925 nonsynonymous SNV 0.745 3 41 hm5C_associated_SNPs_18027 0 0 0 0 2 SDK1 chr7:4260996 5'GT 4260996 Upstream 72bp
chrX 11781090 11781090 1 + C T CESC 11781084 + 11781064 11781104 41 CACGTTATGCCACATGCCAACATGAACGTGCATTATATCCC CACGTTATGCCACATGCCAACATGAATGTGCATTATATCCC < 41bp 1 0.620027441269826 1 0.0683413445949554 experiment 0.759945117460347 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MSL3 ENSG00000005302 CDS Human protein_coding chrX:11781084 chrX:11781090 synonymous SNV . 0 27 hm5C_associated_SNPs_18033 0 0 1 0 1 MSL3 chrX:11781116 5'GT 11781116 Upstream 27bp
chr11 763814 763814 1 + C T CESC 763823 + 763803 763843 41 ATTGTCATGGGCGCCTCCTTCCGCAACACGGGCGAGATCAA ATTGTCATGGGTGCCTCCTTCCGCAACACGGGCGAGATCAA < 41bp 1 0.744774235404108 1 0.857121706008911 experiment 0.510451529191784 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TALDO1 ENSG00000177156 CDS Human protein_coding chr11:763823 chr11:763814 synonymous SNV . 0 12 hm5C_associated_SNPs_18034 0 0 1 0 1 TALDO1 chr11:763747 3'AG 763747 Downstream 68bp
chr17 78172351 78172351 1 + G A CESC 78172335 + 78172315 78172355 41 CATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGCGGACC CATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGCAGACC < 41bp 1 0.315140735279675 1 0.0554681718349457 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172335 chr17:78172351 synonymous SNV . 0 37 hm5C_associated_SNPs_18035 0 0 0 0 1 CARD14 chr17:78172390 5'GT 78172390 Upstream 40bp
chr17 78172351 78172351 1 + G A CESC 78172336 + 78172316 78172356 41 ATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGCGGACCA ATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGCAGACCA < 41bp 1 0.539026748191989 1 0.678072452545166 experiment 0.921946503616021 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172336 chr17:78172351 synonymous SNV . 0 36 hm5C_associated_SNPs_18036 0 0 0 0 1 CARD14 chr17:78172390 5'GT 78172390 Upstream 40bp
chr17 37360380 37360380 1 + G A CESC 37360369 + 37360349 37360389 41 AAGGTGAAGGGGAATGTGTTCAAAAACAAGCGGATTCTCAT AAGGTGAAGGGGAATGTGTTCAAAAACAAGCAGATTCTCAT < 41bp 1 0.635778001595054 1 0.581879675388336 experiment 0.728443996809892 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360369 chr17:37360380 nonsynonymous SNV 0.998 1 32 hm5C_associated_SNPs_18037 0 0 1 0 2 RPL19 chr17:37360330 3'AG 37360330 Downstream 51bp
chr17 37360380 37360380 1 + G A CESC 37360369 + 37360349 37360389 41 AAGGTGAAGGGGAATGTGTTCAAAAACAAGCGGATTCTCAT AAGGTGAAGGGGAATGTGTTCAAAAACAAGCAGATTCTCAT < 41bp 1 0.635778001595054 1 0.581879675388336 experiment 0.728443996809892 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360369 chr17:37360380 nonsynonymous SNV 0.998 1 32 hm5C_associated_SNPs_18037 0 0 1 0 2 RPL19 chr17:37360440 5'GT 37360440 Upstream 61bp
chr22 38321951 38321951 1 + A G CESC 38321955 + 38321935 38321975 41 GGGCCACCCGGAGTCCACACCCAAGTCCCTGCACCCCTGGT GGGCCACCCGGAGTCCGCACCCAAGTCCCTGCACCCCTGGT < 41bp 1 0.140722978963889 1 0.572691261768341 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38321955 chr22:38321951 nonsynonymous SNV 0.104 0 17 hm5C_associated_SNPs_18038 0 0 0 0 1 MICALL1 chr22:38322050 5'GT 38322050 Upstream 100bp
chr3 170110061 170110061 1 + G T CESC 170110073 + 170110053 170110093 41 GAACTGAGGCAGAGATTGGACCATGCTGAGGCCGATAGGCA GAACTGAGTCAGAGATTGGACCATGCTGAGGCCGATAGGCA < 41bp 1 0.164894561357456 1 0.101405888795853 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIL ENSG00000136603 CDS Human protein_coding chr3:170110073 chr3:170110061 nonsynonymous SNV 0.929 5 9 hm5C_associated_SNPs_18040 0 0 1 0 1 SKIL chr3:170110047 3'AG 170110047 Downstream 15bp
chr15 64410320 64410320 1 + C T CESC 64410330 + 64410310 64410350 41 TTTTAGATGCCACAGTGGAGCTATCCTTGGACAGCACACAA TTTTAGATGCTACAGTGGAGCTATCCTTGGACAGCACACAA < 41bp 1 0.0616734528495752 1 0.120413303375244 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410330 chr15:64410320 synonymous SNV . 0 11 hm5C_associated_SNPs_18043 0 0 1 0 1 SNX1 chr15:64410316 3'AG 64410316 Downstream 5bp
chr15 64410320 64410320 1 + C T CESC 64410334 + 64410314 64410354 41 AGATGCCACAGTGGAGCTATCCTTGGACAGCACACAAAATA AGATGCTACAGTGGAGCTATCCTTGGACAGCACACAAAATA < 41bp 1 0.044524109723002 1 0.109552294015884 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410334 chr15:64410320 synonymous SNV . 0 7 hm5C_associated_SNPs_18044 0 0 1 0 1 SNX1 chr15:64410316 3'AG 64410316 Downstream 5bp
chr1 162725037 162725037 1 + C T CESC 162725020 + 162725000 162725040 41 CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCATCGA < 41bp 1 0.430244412910705 1 0.803755462169647 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162725020 chr1:162725037 nonsynonymous SNV 0.995 2 38 hm5C_associated_SNPs_18046 0 0 0 0 2 DDR2 chr1:162724946 3'AG 162724946 Downstream 92bp
chr1 162725037 162725037 1 + C T CESC 162725020 + 162725000 162725040 41 CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCATCGA < 41bp 1 0.430244412910705 1 0.803755462169647 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162725020 chr1:162725037 nonsynonymous SNV 0.995 2 38 hm5C_associated_SNPs_18046 0 0 0 0 2 DDR2 chr1:162725093 5'GT 162725093 Upstream 57bp
chr21 37612076 37612076 1 + G A CESC 37612088 + 37612068 37612108 41 TGTTTGTCGTGCTGGACAGCCTGGCCTGCACGGATGGTGCC TGTTTGTCATGCTGGACAGCCTGGCCTGCACGGATGGTGCC < 41bp 1 0.415489129102153 1 0.276284456253052 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DOPEY2 ENSG00000142197 CDS Human protein_coding chr21:37612088 chr21:37612076 nonsynonymous SNV 0.599 3 9 hm5C_associated_SNPs_18047 0 0 0 0 1 DOPEY2 chr21:37612063 3'AG 37612063 Downstream 14bp
chr2 28521316 28521316 1 + A G CESC 28521298 + 28521278 28521318 41 TGGACAGCTTTACTCCCAGGCCCAAAAAAATTATCCGTACA TGGACAGCTTTACTCCCAGGCCCAAAAAAATTATCCGTGCA < 41bp 1 0.228533077084133 1 0.155998289585114 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BABAM2 ENSG00000158019 CDS Human protein_coding chr2:28521298 chr2:28521316 nonsynonymous SNV 0.986 4 39 hm5C_associated_SNPs_18048 0 0 1 1 1 BABAM2 chr2:28521358 5'GT 28521358 Upstream 43bp
chr6 108497868 108497868 1 + G A CESC 108497862 + 108497842 108497882 41 CCGCGGTCACGCAGCTGGAGCCGCACGGCCTGGAGCTGGCC CCGCGGTCACGCAGCTGGAGCCGCACAGCCTGGAGCTGGCC < 41bp 1 0.524833068892677 1 0.0887146294116974 experiment 0.950333862214647 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108497862 chr6:108497868 nonsynonymous SNV 0.865 0 27 hm5C_associated_SNPs_18051 0 0 0 0 1 NR2E1 chr6:108497942 5'GT 108497942 Upstream 75bp
chr7 76110039 76110039 1 + G A CESC 76110024 + 76110004 76110044 41 GCCCACAGCATCCCCTTGGGCCAGGCAGACCCCTCGCTGGC GCCCACAGCATCCCCTTGGGCCAGGCAGACCCCTCACTGGC < 41bp 1 0.404525322207464 1 0.159285664558411 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110024 chr7:76110039 synonymous SNV . 0 36 hm5C_associated_SNPs_18052 0 0 0 0 1 DTX2 chr7:76110094 5'GT 76110094 Upstream 56bp
chr7 76110039 76110039 1 + G A CESC 76110025 + 76110005 76110045 41 CCCACAGCATCCCCTTGGGCCAGGCAGACCCCTCGCTGGCC CCCACAGCATCCCCTTGGGCCAGGCAGACCCCTCACTGGCC < 41bp 1 0.33153747718648 1 0.239912003278732 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110025 chr7:76110039 synonymous SNV . 0 35 hm5C_associated_SNPs_18053 0 0 0 0 1 DTX2 chr7:76110094 5'GT 76110094 Upstream 56bp
chr7 76110039 76110039 1 + G A CESC 76110029 + 76110009 76110049 41 CAGCATCCCCTTGGGCCAGGCAGACCCCTCGCTGGCCCCTT CAGCATCCCCTTGGGCCAGGCAGACCCCTCACTGGCCCCTT < 41bp 1 0.225581814113016 1 0.627800107002258 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110029 chr7:76110039 synonymous SNV . 0 31 hm5C_associated_SNPs_18054 0 0 0 0 1 DTX2 chr7:76110094 5'GT 76110094 Upstream 56bp
chr6 34730472 34730472 1 + A G CESC 34730453 + 34730433 34730473 41 ATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATTGAC ATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATTGGC < 41bp 1 0.605285429427804 1 0.771468162536621 experiment 0.789429141144391 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNRPC ENSG00000124562 CDS Human protein_coding chr6:34730453 chr6:34730472 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_18055 0 0 1 0 1 SNRPC chr6:34730480 5'GT 34730480 Upstream 9bp
chr22 29533340 29533340 1 + C T CESC 29533346 + 29533326 29533366 41 ACAGCTCTCGTGGGCGCCTGCGGTGGGAACTACTCAGCCAT ACAGCTCTCGTGGGTGCCTGCGGTGGGAACTACTCAGCCAT < 41bp 1 0.512358263786783 1 0.813004076480865 experiment 0.975283472426435 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KREMEN1 ENSG00000183762 CDS Human protein_coding chr22:29533346 chr22:29533340 synonymous SNV . 0 15 hm5C_associated_SNPs_18059 0 0 0 0 1 KREMEN1 chr22:29533330 3'AG 29533330 Downstream 11bp
chr1 117631444 117631444 1 + C T CESC 117631430 + 117631410 117631450 41 GTGATTCTTCCAGGGCACCTCAACACCTTTGCTTCGAATAG GTGATTCTTCCAGGGCACCTCAACACCTTTGCTTTGAATAG < 41bp 1 0.557899835007005 1 0.419727385044098 experiment 0.88420032998599 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117631430 chr1:117631444 stopgain 0.987 0 35 hm5C_associated_SNPs_18060 0 0 1 0 1 TTF2 chr1:117631423 3'AG 117631423 Downstream 22bp
chr7 128490115 128490115 1 + G A CESC 128490100 + 128490080 128490120 41 GCGCCAGCCCTACGCTCCTCCCCGGCCCGGCGCCCGCCCCA GCGCCAGCCCTACGCTCCTCCCCGGCCCGGCGCCCACCCCA < 41bp 1 0.455308521914612 1 0.487265795469284 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128490100 chr7:128490115 nonsynonymous SNV 0.673 2 36 hm5C_associated_SNPs_18061 0 0 0 0 2 FLNC chr7:128490030 3'AG 128490030 Downstream 86bp
chr7 128490115 128490115 1 + G A CESC 128490100 + 128490080 128490120 41 GCGCCAGCCCTACGCTCCTCCCCGGCCCGGCGCCCGCCCCA GCGCCAGCCCTACGCTCCTCCCCGGCCCGGCGCCCACCCCA < 41bp 1 0.455308521914612 1 0.487265795469284 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128490100 chr7:128490115 nonsynonymous SNV 0.673 2 36 hm5C_associated_SNPs_18061 0 0 0 0 2 FLNC chr7:128490128 5'GT 128490128 Upstream 14bp
chr7 128490115 128490115 1 + G A CESC 128490107 + 128490087 128490127 41 CCCTACGCTCCTCCCCGGCCCGGCGCCCGCCCCACACACTG CCCTACGCTCCTCCCCGGCCCGGCGCCCACCCCACACACTG < 41bp 1 0.359408750724762 1 0.263053327798843 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128490107 chr7:128490115 nonsynonymous SNV 0.673 2 29 hm5C_associated_SNPs_18062 0 0 0 0 2 FLNC chr7:128490030 3'AG 128490030 Downstream 86bp
chr7 128490115 128490115 1 + G A CESC 128490107 + 128490087 128490127 41 CCCTACGCTCCTCCCCGGCCCGGCGCCCGCCCCACACACTG CCCTACGCTCCTCCCCGGCCCGGCGCCCACCCCACACACTG < 41bp 1 0.359408750724762 1 0.263053327798843 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128490107 chr7:128490115 nonsynonymous SNV 0.673 2 29 hm5C_associated_SNPs_18062 0 0 0 0 2 FLNC chr7:128490128 5'GT 128490128 Upstream 14bp
chr20 34832792 34832792 1 + G A CESC 34832788 + 34832768 34832808 41 TACCACCAGCTTGGTGAGATCCCCGCTGACTTCTTCGTAGA TACCACCAGCTTGGTGAGATCCCCACTGACTTCTTCGTAGA < 41bp 1 0.582049360692064 1 0.665118217468262 experiment 0.835901278615872 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control AAR2 ENSG00000131043 CDS Human protein_coding chr20:34832788 chr20:34832792 nonsynonymous SNV 0.871 1 25 hm5C_associated_SNPs_18066 0 0 1 0 1 AAR2 chr20:34832848 5'GT 34832848 Upstream 57bp
chr12 6646123 6646123 1 + G A CESC 6646142 + 6646122 6646162 41 CGCTGAGTACGTCGTGGAGTCCACTGGCGTCTTCACCACCA CACTGAGTACGTCGTGGAGTCCACTGGCGTCTTCACCACCA < 41bp 1 0.42345960148757 1 0.107230812311172 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6646142 chr12:6646123 nonsynonymous SNV 0.524 1 2 hm5C_associated_SNPs_18068 0 0 1 0 2 GAPDH chr12:6646086 3'AG 6646086 Downstream 38bp
chr12 6646123 6646123 1 + G A CESC 6646142 + 6646122 6646162 41 CGCTGAGTACGTCGTGGAGTCCACTGGCGTCTTCACCACCA CACTGAGTACGTCGTGGAGTCCACTGGCGTCTTCACCACCA < 41bp 1 0.42345960148757 1 0.107230812311172 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6646142 chr12:6646123 nonsynonymous SNV 0.524 1 2 hm5C_associated_SNPs_18068 0 0 1 0 2 GAPDH chr12:6646176 5'GT 6646176 Upstream 54bp
chr2 102959731 102959731 1 + T G CESC 102959733 + 102959713 102959753 41 ACAGGTTGCTTTCTTAGTTTCAGCAATGGGCTGGCTTGTCT ACAGGTTGCTTTCTTAGTGTCAGCAATGGGCTGGCTTGTCT < 41bp 1 0.606587879213512 1 0.590797781944275 experiment 0.786824241572977 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control IL1RL1 ENSG00000115602 CDS Human protein_coding chr2:102959733 chr2:102959731 nonsynonymous SNV 0.191 0 19 hm5C_associated_SNPs_18071 0 0 0 0 1 IL1RL1 chr2:102959730 3'AG 102959730 Downstream 2bp
chr3 47030600 47030600 1 + C T CESC 47030605 + 47030585 47030625 41 AACATAGAGGCAGGCCGGGGCCAAGTGCTAGTGCCCCGAGT AACATAGAGGCAGGCTGGGGCCAAGTGCTAGTGCCCCGAGT < 41bp 1 0.0975176619884628 1 0.659772992134094 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47030605 chr3:47030600 nonsynonymous SNV 0.307 0 16 hm5C_associated_SNPs_18072 0 0 1 0 2 NBEAL2 chr3:47030575 3'AG 47030575 Downstream 26bp
chr3 47030600 47030600 1 + C T CESC 47030605 + 47030585 47030625 41 AACATAGAGGCAGGCCGGGGCCAAGTGCTAGTGCCCCGAGT AACATAGAGGCAGGCTGGGGCCAAGTGCTAGTGCCCCGAGT < 41bp 1 0.0975176619884628 1 0.659772992134094 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47030605 chr3:47030600 nonsynonymous SNV 0.307 0 16 hm5C_associated_SNPs_18072 0 0 1 0 2 NBEAL2 chr3:47030656 5'GT 47030656 Upstream 57bp
chr3 47030600 47030600 1 + C T CESC 47030606 + 47030586 47030626 41 ACATAGAGGCAGGCCGGGGCCAAGTGCTAGTGCCCCGAGTG ACATAGAGGCAGGCTGGGGCCAAGTGCTAGTGCCCCGAGTG < 41bp 1 0.405879126943395 1 0.61117684841156 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47030606 chr3:47030600 nonsynonymous SNV 0.307 0 15 hm5C_associated_SNPs_18073 0 0 1 0 2 NBEAL2 chr3:47030575 3'AG 47030575 Downstream 26bp
chr3 47030600 47030600 1 + C T CESC 47030606 + 47030586 47030626 41 ACATAGAGGCAGGCCGGGGCCAAGTGCTAGTGCCCCGAGTG ACATAGAGGCAGGCTGGGGCCAAGTGCTAGTGCCCCGAGTG < 41bp 1 0.405879126943395 1 0.61117684841156 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47030606 chr3:47030600 nonsynonymous SNV 0.307 0 15 hm5C_associated_SNPs_18073 0 0 1 0 2 NBEAL2 chr3:47030656 5'GT 47030656 Upstream 57bp
chr3 47030600 47030600 1 + C T CESC 47030618 + 47030598 47030638 41 GCCGGGGCCAAGTGCTAGTGCCCCGAGTGCTGGCACTGTTG GCTGGGGCCAAGTGCTAGTGCCCCGAGTGCTGGCACTGTTG < 41bp 1 0.177611245416619 1 0.0404212474822998 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47030618 chr3:47030600 nonsynonymous SNV 0.307 0 3 hm5C_associated_SNPs_18074 0 0 1 0 2 NBEAL2 chr3:47030575 3'AG 47030575 Downstream 26bp
chr3 47030600 47030600 1 + C T CESC 47030618 + 47030598 47030638 41 GCCGGGGCCAAGTGCTAGTGCCCCGAGTGCTGGCACTGTTG GCTGGGGCCAAGTGCTAGTGCCCCGAGTGCTGGCACTGTTG < 41bp 1 0.177611245416619 1 0.0404212474822998 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47030618 chr3:47030600 nonsynonymous SNV 0.307 0 3 hm5C_associated_SNPs_18074 0 0 1 0 2 NBEAL2 chr3:47030656 5'GT 47030656 Upstream 57bp
chr3 47030600 47030600 1 + C T CESC 47030619 + 47030599 47030639 41 CCGGGGCCAAGTGCTAGTGCCCCGAGTGCTGGCACTGTTGA CTGGGGCCAAGTGCTAGTGCCCCGAGTGCTGGCACTGTTGA < 41bp 1 0.336232411512908 1 0.582248210906982 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47030619 chr3:47030600 nonsynonymous SNV 0.307 0 2 hm5C_associated_SNPs_18075 0 0 1 0 2 NBEAL2 chr3:47030575 3'AG 47030575 Downstream 26bp
chr3 47030600 47030600 1 + C T CESC 47030619 + 47030599 47030639 41 CCGGGGCCAAGTGCTAGTGCCCCGAGTGCTGGCACTGTTGA CTGGGGCCAAGTGCTAGTGCCCCGAGTGCTGGCACTGTTGA < 41bp 1 0.336232411512908 1 0.582248210906982 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47030619 chr3:47030600 nonsynonymous SNV 0.307 0 2 hm5C_associated_SNPs_18075 0 0 1 0 2 NBEAL2 chr3:47030656 5'GT 47030656 Upstream 57bp
chr16 706391 706391 1 + G A CESC 706388 + 706368 706408 41 CCTCGGGCCACCTGGGCTTCCTGGACACGCTGTCCCGGGTG CCTCGGGCCACCTGGGCTTCCTGAACACGCTGTCCCGGGTG < 41bp 1 0.713304112654366 1 0.541586339473724 experiment 0.573391774691268 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:706388 chr16:706391 nonsynonymous SNV 0.877 3 24 hm5C_associated_SNPs_18076 0 0 1 0 1 WDR90 chr16:706302 3'AG 706302 Downstream 90bp
chr14 24909613 24909613 1 - G A CESC 24909627 - 24909607 24909647 41 TTCGCCTGGGCCTGGGGGGCCCCATCGGCTCAGGCCACCAA TTCGCCTGGGCCTGGGGGGCCCCATCGGCTCAGGTCACCAA < 41bp 1 0.32303472137672 1 0.155137091875076 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SDR39U1 ENSG00000100445 CDS Human protein_coding chr14:24909627 chr14:24909613 synonymous SNV . 0 35 hm5C_associated_SNPs_18077 0 0 1 0 1 SDR39U1 chr14:24909698 3'AG 24909698 Downstream 86bp
chr9 133738155 133738155 1 + C T CESC 133738171 + 133738151 133738191 41 TCTACGTCTCCTCCGAGAGCCGCTTCAACACCCTGGCCGAG TCTATGTCTCCTCCGAGAGCCGCTTCAACACCCTGGCCGAG < 41bp 1 0.113819384188026 1 0.123953431844711 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133738171 chr9:133738155 synonymous SNV . 0 5 hm5C_associated_SNPs_18078 0 0 1 0 1 ABL1 chr9:133738150 3'AG 133738150 Downstream 6bp
chr7 128407652 128407652 1 + C T CESC 128407640 + 128407620 128407660 41 GAAGAGACCAAAGACTGGATCCTTCCCTCAGACTATGATCA GAAGAGACCAAAGACTGGATCCTTCCCTCAGATTATGATCA < 41bp 1 0.0213300574455008 1 0.0525286793708801 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CALU ENSG00000128595 CDS Human protein_coding chr7:128407640 chr7:128407652 synonymous SNV . 0 33 hm5C_associated_SNPs_18079 0 0 1 0 1 CALU chr7:128407709 5'GT 128407709 Upstream 58bp
chr7 128407652 128407652 1 + C T CESC 128407641 + 128407621 128407661 41 AAGAGACCAAAGACTGGATCCTTCCCTCAGACTATGATCAT AAGAGACCAAAGACTGGATCCTTCCCTCAGATTATGATCAT < 41bp 1 0.173930904862816 1 0.0527183711528778 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CALU ENSG00000128595 CDS Human protein_coding chr7:128407641 chr7:128407652 synonymous SNV . 0 32 hm5C_associated_SNPs_18080 0 0 1 0 1 CALU chr7:128407709 5'GT 128407709 Upstream 58bp
chr7 128407652 128407652 1 + C T CESC 128407644 + 128407624 128407664 41 AGACCAAAGACTGGATCCTTCCCTCAGACTATGATCATGCA AGACCAAAGACTGGATCCTTCCCTCAGATTATGATCATGCA < 41bp 1 0.116738893405352 1 0.167196929454803 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CALU ENSG00000128595 CDS Human protein_coding chr7:128407644 chr7:128407652 synonymous SNV . 0 29 hm5C_associated_SNPs_18081 0 0 1 0 1 CALU chr7:128407709 5'GT 128407709 Upstream 58bp
chr11 65396113 65396113 1 + G A CESC 65396110 + 65396090 65396130 41 CGTTTCGTGCTGACCTACATCGCGCCCTGGCAGATCACCTG CGTTTCGTGCTGACCTACATCGCACCCTGGCAGATCACCTG < 41bp 1 0.261487960227781 1 0.444856196641922 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65396110 chr11:65396113 synonymous SNV . 0 24 hm5C_associated_SNPs_18082 0 0 0 0 2 PCNX3 chr11:65396066 3'AG 65396066 Downstream 48bp
chr11 65396113 65396113 1 + G A CESC 65396110 + 65396090 65396130 41 CGTTTCGTGCTGACCTACATCGCGCCCTGGCAGATCACCTG CGTTTCGTGCTGACCTACATCGCACCCTGGCAGATCACCTG < 41bp 1 0.261487960227781 1 0.444856196641922 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65396110 chr11:65396113 synonymous SNV . 0 24 hm5C_associated_SNPs_18082 0 0 0 0 2 PCNX3 chr11:65396174 5'GT 65396174 Upstream 62bp
chr17 7479881 7479881 1 + G A CESC 7479886 + 7479866 7479906 41 GGAGACTACATGGGCGCCTCCTGTCACGCCTGTATCGGGGG GGAGACTACATGGGCACCTCCTGTCACGCCTGTATCGGGGG < 41bp 1 0.175582607870134 1 0.392135471105576 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479886 chr17:7479881 nonsynonymous SNV 0.940 3 16 hm5C_associated_SNPs_18083 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 40bp
chr17 7479881 7479881 1 + G A CESC 7479892 + 7479872 7479912 41 TACATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAA TACATGGGCACCTCCTGTCACGCCTGTATCGGGGGCACCAA < 41bp 1 0.626410477588498 1 0.0668170750141144 experiment 0.747179044823003 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479892 chr17:7479881 nonsynonymous SNV 0.940 3 10 hm5C_associated_SNPs_18084 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 40bp
chr17 7479881 7479881 1 + G A CESC 7479895 + 7479875 7479915 41 ATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAACGT ATGGGCACCTCCTGTCACGCCTGTATCGGGGGCACCAACGT < 41bp 1 0.573837057883373 1 0.178649514913559 experiment 0.852325884233255 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479895 chr17:7479881 nonsynonymous SNV 0.940 3 7 hm5C_associated_SNPs_18085 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 40bp
chr2 236817467 236817467 1 + C T CESC 236817455 + 236817435 236817475 41 GAAAGTCCCAGGGAAGAGGCCACCCCGAGCCACGTCAGCCT GAAAGTCCCAGGGAAGAGGCCACCCCGAGCCATGTCAGCCT < 41bp 1 0.114743717161596 1 0.0508439838886261 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236817455 chr2:236817467 nonsynonymous SNV 0.915 3 33 hm5C_associated_SNPs_18086 0 0 1 0 2 AGAP1 chr2:236817382 3'AG 236817382 Downstream 86bp
chr2 236817467 236817467 1 + C T CESC 236817455 + 236817435 236817475 41 GAAAGTCCCAGGGAAGAGGCCACCCCGAGCCACGTCAGCCT GAAAGTCCCAGGGAAGAGGCCACCCCGAGCCATGTCAGCCT < 41bp 1 0.114743717161596 1 0.0508439838886261 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236817455 chr2:236817467 nonsynonymous SNV 0.915 3 33 hm5C_associated_SNPs_18086 0 0 1 0 2 AGAP1 chr2:236817550 5'GT 236817550 Upstream 84bp
chr16 85682307 85682307 1 + A G CESC 85682293 + 85682273 85682313 41 CCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTC CCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCGTCGCTC < 41bp 1 0.180787762800469 1 0.064752608537674 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85682293 chr16:85682307 nonsynonymous SNV 0.991 4 35 hm5C_associated_SNPs_18087 0 0 1 0 1 GSE1 chr16:85682357 5'GT 85682357 Upstream 51bp
chr1 3342248 3342248 1 + C T CESC 3342250 + 3342230 3342270 41 AAGTGCCACCTGTGCAACCGCTGCTTCGGGCAGCAGACCAA AAGTGCCACCTGTGCAACTGCTGCTTCGGGCAGCAGACCAA < 41bp 1 0.316573160172123 1 0.185552418231964 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3342250 chr1:3342248 nonsynonymous SNV 1.000 3 19 hm5C_associated_SNPs_18093 0 0 0 0 1 PRDM16 chr1:3342314 5'GT 3342314 Upstream 67bp
chr2 27455051 27455051 1 + T C CESC 27455031 + 27455011 27455051 41 GACAGCCTTTGCCGCCAGACCTGCTGCAACAGGCCAAGTGT GACAGCCTTTGCCGCCAGACCTGCTGCAACAGGCCAAGTGC < 41bp 1 0.338115742558274 1 0.518935322761536 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27455031 chr2:27455051 synonymous SNV . 0 41 hm5C_associated_SNPs_18094 0 0 1 0 1 CAD chr2:27455092 5'GT 27455092 Upstream 42bp
chr17 79668134 79668134 1 + C T CESC 79668148 + 79668128 79668168 41 CTACATCGCGGGGCAGCAGCCCATGTACCAGCAGGTGAGCC CTACATTGCGGGGCAGCAGCCCATGTACCAGCAGGTGAGCC < 41bp 1 0.196277855656487 1 0.390263795852661 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79668148 chr17:79668134 synonymous SNV . 0 7 hm5C_associated_SNPs_18096 0 0 1 0 2 HGS chr17:79668075 3'AG 79668075 Downstream 60bp
chr17 79668134 79668134 1 + C T CESC 79668148 + 79668128 79668168 41 CTACATCGCGGGGCAGCAGCCCATGTACCAGCAGGTGAGCC CTACATTGCGGGGCAGCAGCCCATGTACCAGCAGGTGAGCC < 41bp 1 0.196277855656487 1 0.390263795852661 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79668148 chr17:79668134 synonymous SNV . 0 7 hm5C_associated_SNPs_18096 0 0 1 0 2 HGS chr17:79668161 5'GT 79668161 Upstream 28bp
chr12 52635363 52635363 1 + G T CESC 52635378 + 52635358 52635398 41 GCGCAGTATGAGGAGATGGCCAAATGCAGCCGGGCTGAGGC GCGCATTATGAGGAGATGGCCAAATGCAGCCGGGCTGAGGC < 41bp 1 0.362399618865997 1 0.629744529724121 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52635378 chr12:52635363 nonsynonymous SNV 0.824 3 6 hm5C_associated_SNPs_18097 0 0 1 0 1 KRT7 chr12:52635420 5'GT 52635420 Upstream 58bp
chr8 143558040 143558040 1 + C T CESC 143558023 + 143558003 143558043 41 GCGAGGAGCTGGGGGACGAGCTGCAGCAGTTTGGGTTCCCA GCGAGGAGCTGGGGGACGAGCTGCAGCAGTTTGGGTTTCCA < 41bp 1 0.765144858700833 1 0.819642305374146 experiment 0.469710282598334 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143558023 chr8:143558040 synonymous SNV . 0 38 hm5C_associated_SNPs_18101 0 0 0 0 2 ADGRB1 chr8:143557946 3'AG 143557946 Downstream 95bp
chr8 143558040 143558040 1 + C T CESC 143558023 + 143558003 143558043 41 GCGAGGAGCTGGGGGACGAGCTGCAGCAGTTTGGGTTCCCA GCGAGGAGCTGGGGGACGAGCTGCAGCAGTTTGGGTTTCCA < 41bp 1 0.765144858700833 1 0.819642305374146 experiment 0.469710282598334 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143558023 chr8:143558040 synonymous SNV . 0 38 hm5C_associated_SNPs_18101 0 0 0 0 2 ADGRB1 chr8:143558056 5'GT 143558056 Upstream 17bp
chrX 153695759 153695759 1 + C T CESC 153695748 + 153695728 153695768 41 TTTACCTACTACCCTGATCCCAGCTTTGAGCCGCTGGGGCC TTTACCTACTACCCTGATCCCAGCTTTGAGCTGCTGGGGCC < 41bp 1 0.417542099464905 1 0.509492456912994 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153695748 chrX:153695759 nonsynonymous SNV 0.891 1 32 hm5C_associated_SNPs_18104 0 0 1 0 1 PLXNA3 chrX:153695814 5'GT 153695814 Upstream 56bp
chr19 14674818 14674818 1 + C T CESC 14674819 + 14674799 14674839 41 CCTAACAGAGTACGCGGGGCCCCTTTTCATCTACCTGCTCT CCTAACAGAGTACGCGGGGTCCCTTTTCATCTACCTGCTCT < 41bp 1 0.165185018623741 1 0.0314308106899261 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TECR ENSG00000099797 CDS Human protein_coding chr19:14674819 chr19:14674818 nonsynonymous SNV 0.985 2 20 hm5C_associated_SNPs_18106 0 0 1 0 2 TECR chr19:14674794 3'AG 14674794 Downstream 25bp
chr19 14674818 14674818 1 + C T CESC 14674819 + 14674799 14674839 41 CCTAACAGAGTACGCGGGGCCCCTTTTCATCTACCTGCTCT CCTAACAGAGTACGCGGGGTCCCTTTTCATCTACCTGCTCT < 41bp 1 0.165185018623741 1 0.0314308106899261 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TECR ENSG00000099797 CDS Human protein_coding chr19:14674819 chr19:14674818 nonsynonymous SNV 0.985 2 20 hm5C_associated_SNPs_18106 0 0 1 0 2 TECR chr19:14674909 5'GT 14674909 Upstream 92bp
chr19 14674818 14674818 1 + C T CESC 14674820 + 14674800 14674840 41 CTAACAGAGTACGCGGGGCCCCTTTTCATCTACCTGCTCTT CTAACAGAGTACGCGGGGTCCCTTTTCATCTACCTGCTCTT < 41bp 1 0.0353187164582597 1 0.0139857530593872 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TECR ENSG00000099797 CDS Human protein_coding chr19:14674820 chr19:14674818 nonsynonymous SNV 0.985 2 19 hm5C_associated_SNPs_18107 0 0 1 0 2 TECR chr19:14674794 3'AG 14674794 Downstream 25bp
chr19 14674818 14674818 1 + C T CESC 14674820 + 14674800 14674840 41 CTAACAGAGTACGCGGGGCCCCTTTTCATCTACCTGCTCTT CTAACAGAGTACGCGGGGTCCCTTTTCATCTACCTGCTCTT < 41bp 1 0.0353187164582597 1 0.0139857530593872 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TECR ENSG00000099797 CDS Human protein_coding chr19:14674820 chr19:14674818 nonsynonymous SNV 0.985 2 19 hm5C_associated_SNPs_18107 0 0 1 0 2 TECR chr19:14674909 5'GT 14674909 Upstream 92bp
chr15 69714744 69714744 1 + C T CESC 69714749 + 69714729 69714769 41 GTCAGAAAAGAGAAGCTATGCCCAATCCAAAGACTTCTTCT GTCAGAAAAGAGAAGTTATGCCCAATCCAAAGACTTCTTCT < 41bp 1 0.487482173269615 1 0.0493801832199097 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69714749 chr15:69714744 nonsynonymous SNV 0.985 0 16 hm5C_associated_SNPs_18108 0 0 1 0 2 KIF23 chr15:69714665 3'AG 69714665 Downstream 80bp
chr15 69714744 69714744 1 + C T CESC 69714749 + 69714729 69714769 41 GTCAGAAAAGAGAAGCTATGCCCAATCCAAAGACTTCTTCT GTCAGAAAAGAGAAGTTATGCCCAATCCAAAGACTTCTTCT < 41bp 1 0.487482173269615 1 0.0493801832199097 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69714749 chr15:69714744 nonsynonymous SNV 0.985 0 16 hm5C_associated_SNPs_18108 0 0 1 0 2 KIF23 chr15:69714774 5'GT 69714774 Upstream 31bp
chr14 105936295 105936295 1 + G A CESC 105936285 + 105936265 105936305 41 CGGCGGCGGATGAACTGGATCGACGCCCCGGATGACGTGTT CGGCGGCGGATGAACTGGATCGACGCCCCGAATGACGTGTT < 41bp 1 0.563651921034756 1 0.681366324424744 experiment 0.872696157930488 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936285 chr14:105936295 nonsynonymous SNV 0.934 0 31 hm5C_associated_SNPs_18109 0 0 1 1 1 MTA1 chr14:105936329 5'GT 105936329 Upstream 35bp
chr14 105936295 105936295 1 + G A CESC 105936315 + 105936295 105936335 41 GATGACGTGTTCTACATGGCCACAGAGGAGACCAGGTGGGG AATGACGTGTTCTACATGGCCACAGAGGAGACCAGGTGGGG < 41bp 1 0.534526544067363 1 0.685532450675964 experiment 0.930946911865274 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936315 chr14:105936295 nonsynonymous SNV 0.934 0 1 hm5C_associated_SNPs_18110 0 0 1 1 1 MTA1 chr14:105936329 5'GT 105936329 Upstream 35bp
chr14 24779938 24779938 1 + G A CESC 24779945 + 24779925 24779965 41 TCGCGGGCCACAGGCACAGCCTTCCTGCTGCTGGCGGCGCT TCGCGGGCCACAGACACAGCCTTCCTGCTGCTGGCGGCGCT < 41bp 1 0.145585758575868 1 0.172274529933929 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LTB4R2 ENSG00000213906;ENSG00000272658 CDS Human other chr14:24779945 chr14:24779938 nonsynonymous SNV 0.913 3 14 hm5C_associated_SNPs_18112 0 0 1 0 1 CIDEB;LTB4R2 chr14:24779861 3'AG 24779861 Downstream 78bp
chrX 40457942 40457942 1 + C T CESC 40457957 + 40457937 40457977 41 ACCTGCTCTTTCTTTCTGAACTGCAAGTGCTACATGATATT ACCTGTTCTTTCTTTCTGAACTGCAAGTGCTACATGATATT < 41bp 1 0.677818889995465 1 0.0283311307430267 experiment 0.64436222000907 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40457957 chrX:40457942 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_18113 0 0 0 0 2 ATP6AP2 chrX:40457933 3'AG 40457933 Downstream 10bp
chrX 40457942 40457942 1 + C T CESC 40457957 + 40457937 40457977 41 ACCTGCTCTTTCTTTCTGAACTGCAAGTGCTACATGATATT ACCTGTTCTTTCTTTCTGAACTGCAAGTGCTACATGATATT < 41bp 1 0.677818889995465 1 0.0283311307430267 experiment 0.64436222000907 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40457957 chrX:40457942 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_18113 0 0 0 0 2 ATP6AP2 chrX:40457986 5'GT 40457986 Upstream 45bp
chrX 99920260 99920260 1 + C T CESC 99920250 + 99920230 99920270 41 ATCTTGGCAGACATAGATCCCCCCAAGATCCGCTGTCCCCA ATCTTGGCAGACATAGATCCCCCCAAGATCTGCTGTCCCCA < 41bp 1 0.591636160007997 1 0.158672451972961 experiment 0.816727679984006 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99920250 chrX:99920260 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_18115 0 0 0 0 1 SRPX2 chrX:99920240 3'AG 99920240 Downstream 21bp
chr11 33079519 33079519 1 + G T CESC 33079509 + 33079489 33079529 41 GGTCATACTAGACTGAGAAACCAGATAACAGAAGTCTTGGA GGTCATACTAGACTGAGAAACCAGATAACATAAGTCTTGGA < 41bp 1 0.546179299651898 1 0.506024360656738 experiment 0.907641400696203 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33079509 chr11:33079519 stopgain 0.998 1 31 hm5C_associated_SNPs_18116 0 0 0 0 1 TCP11L1 chr11:33079465 3'AG 33079465 Downstream 55bp
chr11 126143249 126143249 1 + G A CESC 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCAATGCTCCTCCCCTGGACCTCCGGTTCA < 41bp 1 0.452828859777537 1 0.0818069577217102 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143249 nonsynonymous SNV 0.004 0 14 hm5C_associated_SNPs_18117 0 0 1 0 2 FOXRED1 chr11:126143211 3'AG 126143211 Downstream 39bp
chr11 126143249 126143249 1 + G A CESC 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCAATGCTCCTCCCCTGGACCTCCGGTTCA < 41bp 1 0.452828859777537 1 0.0818069577217102 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143249 nonsynonymous SNV 0.004 0 14 hm5C_associated_SNPs_18117 0 0 1 0 2 FOXRED1 chr11:126143231 3'AG 126143231 Downstream 19bp
chr16 816671 816671 1 + G A CESC 816657 + 816637 816677 41 CCACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCC CCACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGACCACCC < 41bp 1 0.0158406146215576 1 0.159428030252457 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816657 chr16:816671 nonsynonymous SNV 0.178 0 35 hm5C_associated_SNPs_18118 0 0 0 0 2 MSLN chr16:816644 3'AG 816644 Downstream 28bp
chr16 816671 816671 1 + G A CESC 816657 + 816637 816677 41 CCACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCC CCACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGACCACCC < 41bp 1 0.0158406146215576 1 0.159428030252457 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816657 chr16:816671 nonsynonymous SNV 0.178 0 35 hm5C_associated_SNPs_18118 0 0 0 0 2 MSLN chr16:816668 3'AG 816668 Downstream 4bp
chr16 816671 816671 1 + G A CESC 816658 + 816638 816678 41 CACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCCT CACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGACCACCCT < 41bp 1 0.0100231904889397 1 0.0714310109615326 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816658 chr16:816671 nonsynonymous SNV 0.178 0 34 hm5C_associated_SNPs_18119 0 0 0 0 2 MSLN chr16:816644 3'AG 816644 Downstream 28bp
chr16 816671 816671 1 + G A CESC 816658 + 816638 816678 41 CACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCCT CACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGACCACCCT < 41bp 1 0.0100231904889397 1 0.0714310109615326 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816658 chr16:816671 nonsynonymous SNV 0.178 0 34 hm5C_associated_SNPs_18119 0 0 0 0 2 MSLN chr16:816668 3'AG 816668 Downstream 4bp
chr15 69737222 69737222 1 + G A CESC 69737220 + 69737200 69737240 41 CAGATGGGTAGATCATAAGCCCGCCTCTAACATGCAAACTG CAGATGGGTAGATCATAAGCCCACCTCTAACATGCAAACTG < 41bp 1 0.132096176873894 1 0.0333828330039978 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69737220 chr15:69737222 nonsynonymous SNV 0.983 0 23 hm5C_associated_SNPs_18120 0 0 1 0 1 KIF23 chr15:69737129 3'AG 69737129 Downstream 94bp
chr15 69737222 69737222 1 + G A CESC 69737224 + 69737204 69737244 41 TGGGTAGATCATAAGCCCGCCTCTAACATGCAAACTGAAAC TGGGTAGATCATAAGCCCACCTCTAACATGCAAACTGAAAC < 41bp 1 0.302685051131552 1 0.332107245922089 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69737224 chr15:69737222 nonsynonymous SNV 0.983 0 19 hm5C_associated_SNPs_18121 0 0 1 0 1 KIF23 chr15:69737129 3'AG 69737129 Downstream 94bp
chr1 6681476 6681476 1 + G A CESC 6681488 + 6681468 6681508 41 CAGATGACGATTCCTGGGACCTCGTGACCTGCTTCTGCATG CAGATGACAATTCCTGGGACCTCGTGACCTGCTTCTGCATG < 41bp 1 0.336427873450511 1 0.0231766104698181 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF13 ENSG00000116273 CDS Human protein_coding chr1:6681488 chr1:6681476 nonsynonymous SNV 0.996 3 9 hm5C_associated_SNPs_18122 0 0 1 0 1 PHF13 chr1:6681471 3'AG 6681471 Downstream 6bp
chr8 2092591 2092591 1 + T C CESC 2092590 + 2092570 2092610 41 AACCTCTTCCGTCCAAAGACCTTGAATCTGACCTGCACGGT AACCTCTTCCGTCCAAAGACCCTGAATCTGACCTGCACGGT < 41bp 1 0.13906684305778 1 0.244127690792084 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2092590 chr8:2092591 synonymous SNV . 0 22 hm5C_associated_SNPs_18123 0 0 0 0 1 MYOM2 chr8:2092588 3'AG 2092588 Downstream 4bp
chr12 1890209 1890209 1 + T C CESC 1890217 + 1890197 1890237 41 CAGTGGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAG CAGTGGGACATGCTTGCCACCCCTCAGTATCGGGGAGTAAG < 41bp 1 0.0511139698047835 1 0.0353023707866669 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1890217 chr12:1890209 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_18125 0 0 0 0 1 ADIPOR2 chr12:1890242 5'GT 1890242 Upstream 34bp
chr12 1890209 1890209 1 + T C CESC 1890218 + 1890198 1890238 41 AGTGGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAGA AGTGGGACATGCTTGCCACCCCTCAGTATCGGGGAGTAAGA < 41bp 1 0.349886414473247 1 0.0574413239955902 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1890218 chr12:1890209 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_18126 0 0 0 0 1 ADIPOR2 chr12:1890242 5'GT 1890242 Upstream 34bp
chr12 1890209 1890209 1 + T C CESC 1890219 + 1890199 1890239 41 GTGGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAGAG GTGGGACATGCTTGCCACCCCTCAGTATCGGGGAGTAAGAG < 41bp 1 0.537773510154571 1 0.460081279277802 experiment 0.924452979690858 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1890219 chr12:1890209 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_18127 0 0 0 0 1 ADIPOR2 chr12:1890242 5'GT 1890242 Upstream 34bp
chr12 1890209 1890209 1 + T C CESC 1890221 + 1890201 1890241 41 GGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAGAGCA GGGACATGCTTGCCACCCCTCAGTATCGGGGAGTAAGAGCA < 41bp 1 0.620476019922093 1 0.856720328330994 experiment 0.759047960155813 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1890221 chr12:1890209 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_18128 0 0 0 0 1 ADIPOR2 chr12:1890242 5'GT 1890242 Upstream 34bp
chr19 49469847 49469847 1 + A G CESC 49469831 + 49469811 49469851 41 GTTTCTAATTTCTCCCTCTTCTCTCTCAGCTCTGTGACTTC GTTTCTAATTTCTCCCTCTTCTCTCTCAGCTCTGTGGCTTC < 41bp 1 0.301485068031866 1 0.227178931236267 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469831 chr19:49469847 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_18129 0 0 1 1 1 FTL chr19:49469840 3'AG 49469840 Downstream 8bp
chr2 47221590 47221590 1 + G A CESC 47221605 + 47221585 47221625 41 CATGGGCAAGGAGGAGAGTTCTTTCGCCACTCAGGCCCTGC CATGGACAAGGAGGAGAGTTCTTTCGCCACTCAGGCCCTGC < 41bp 1 0.0806636242473411 1 0.0190828442573547 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47221605 chr2:47221590 nonsynonymous SNV 0.998 0 6 hm5C_associated_SNPs_18131 0 0 1 0 2 TTC7A chr2:47221496 3'AG 47221496 Downstream 95bp
chr2 47221590 47221590 1 + G A CESC 47221605 + 47221585 47221625 41 CATGGGCAAGGAGGAGAGTTCTTTCGCCACTCAGGCCCTGC CATGGACAAGGAGGAGAGTTCTTTCGCCACTCAGGCCCTGC < 41bp 1 0.0806636242473411 1 0.0190828442573547 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47221605 chr2:47221590 nonsynonymous SNV 0.998 0 6 hm5C_associated_SNPs_18131 0 0 1 0 2 TTC7A chr2:47221653 5'GT 47221653 Upstream 64bp
chr2 75882227 75882227 1 + G A CESC 75882235 + 75882215 75882255 41 CCTGGTCTAAACGCTGGGAACGTCCAAATTTTAATATTAAA CCTGGTCTAAACACTGGGAACGTCCAAATTTTAATATTAAA < 41bp 1 0.0590618203494225 1 0.115106344223022 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRPL19 ENSG00000115364 CDS Human protein_coding chr2:75882235 chr2:75882227 nonsynonymous SNV 0.993 4 13 hm5C_associated_SNPs_18132 0 0 1 0 1 MRPL19 chr2:75882190 3'AG 75882190 Downstream 38bp
chrX 107911640 107911640 1 + T C CESC 107911644 + 107911624 107911664 41 TTCACGGTTTCCCTGGTGTGCAGGGTCCCCCAGGCCCTCCT TTCACGGTTTCCCTGGCGTGCAGGGTCCCCCAGGCCCTCCT < 41bp 1 0.779826403390355 1 0.811754703521729 experiment 0.44034719321929 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107911644 chrX:107911640 synonymous SNV . 0 17 hm5C_associated_SNPs_18133 0 0 1 0 2 COL4A5 chrX:107911549 3'AG 107911549 Downstream 92bp
chrX 107911640 107911640 1 + T C CESC 107911644 + 107911624 107911664 41 TTCACGGTTTCCCTGGTGTGCAGGGTCCCCCAGGCCCTCCT TTCACGGTTTCCCTGGCGTGCAGGGTCCCCCAGGCCCTCCT < 41bp 1 0.779826403390355 1 0.811754703521729 experiment 0.44034719321929 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107911644 chrX:107911640 synonymous SNV . 0 17 hm5C_associated_SNPs_18133 0 0 1 0 2 COL4A5 chrX:107911734 5'GT 107911734 Upstream 95bp
chr9 93624493 93624493 1 + G A CESC 93624497 + 93624477 93624517 41 CTCTCTTCTAGGATCCGAGCCAGAGACAACAACGGCTCCTA CTCTCTTCTAGGATCCAAGCCAGAGACAACAACGGCTCCTA < 41bp 1 0.576777074071209 1 0.839382171630859 experiment 0.846445851857583 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYK ENSG00000165025 CDS Human protein_coding chr9:93624497 chr9:93624493 nonsynonymous SNV 0.964 5 17 hm5C_associated_SNPs_18134 0 0 0 0 1 SYK chr9:93624488 3'AG 93624488 Downstream 6bp
chr4 160264479 160264479 1 + G T CESC 160264487 + 160264467 160264507 41 TGAGAAGCTAAGGATGATTGCAAAAGAAATTCGTCACGTTG TGAGAAGCTAAGTATGATTGCAAAAGAAATTCGTCACGTTG < 41bp 1 0.567339223524324 1 0.274310290813446 experiment 0.865321552951351 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160264487 chr4:160264479 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_18135 0 0 1 0 2 RAPGEF2 chr4:160264433 3'AG 160264433 Downstream 47bp
chr4 160264479 160264479 1 + G T CESC 160264487 + 160264467 160264507 41 TGAGAAGCTAAGGATGATTGCAAAAGAAATTCGTCACGTTG TGAGAAGCTAAGTATGATTGCAAAAGAAATTCGTCACGTTG < 41bp 1 0.567339223524324 1 0.274310290813446 experiment 0.865321552951351 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160264487 chr4:160264479 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_18135 0 0 1 0 2 RAPGEF2 chr4:160264556 5'GT 160264556 Upstream 78bp
chr11 93412684 93412684 1 + G A CESC 93412674 + 93412654 93412694 41 TGGAACGGTTTGAAAAGGCACATGTACGGGGATTCCAAGCA TGGAACGGTTTGAAAAGGCACATGTACGGGAATTCCAAGCA < 41bp 1 0.220301559685363 1 0.0777067840099335 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEP295 ENSG00000166004 CDS Human protein_coding chr11:93412674 chr11:93412684 nonsynonymous SNV 0.868 4 31 hm5C_associated_SNPs_18136 0 0 1 0 1 CEP295 chr11:93412718 5'GT 93412718 Upstream 35bp
chr12 111744797 111744797 1 + C T CESC 111744777 + 111744757 111744797 41 TCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCC TCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCT < 41bp 1 0.027138286716383 1 0.105343878269196 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744777 chr12:111744797 synonymous SNV . 0 41 hm5C_associated_SNPs_18137 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 73bp
chr12 111744797 111744797 1 + C T CESC 111744778 + 111744758 111744798 41 CGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCT CGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCTT < 41bp 1 0.582087336313476 1 0.973462343215942 experiment 0.835825327373048 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744778 chr12:111744797 synonymous SNV . 0 40 hm5C_associated_SNPs_18138 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 73bp
chr12 111744797 111744797 1 + C T CESC 111744780 + 111744760 111744800 41 GCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGC GCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCTTGC < 41bp 1 0.23941966402563 1 0.77613353729248 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744780 chr12:111744797 synonymous SNV . 0 38 hm5C_associated_SNPs_18139 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 73bp
chr12 111744797 111744797 1 + C T CESC 111744781 + 111744761 111744801 41 CTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGCG CTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCTTGCG < 41bp 1 0.353864010330662 1 0.755725860595703 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744781 chr12:111744797 synonymous SNV . 0 37 hm5C_associated_SNPs_18140 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 73bp
chr5 118861676 118861676 1 + G A CESC 118861674 + 118861654 118861694 41 TTTCTGCCAGGCGTGTGTTACAGCAGTTTGCAGATAATGAT TTTCTGCCAGGCGTGTGTTACAACAGTTTGCAGATAATGAT < 41bp 1 0.665499451328833 1 0.143329828977585 experiment 0.669001097342334 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118861674 chr5:118861676 synonymous SNV . 0 23 hm5C_associated_SNPs_18142 0 0 1 0 2 HSD17B4 chr5:118861612 3'AG 118861612 Downstream 65bp
chr5 118861676 118861676 1 + G A CESC 118861674 + 118861654 118861694 41 TTTCTGCCAGGCGTGTGTTACAGCAGTTTGCAGATAATGAT TTTCTGCCAGGCGTGTGTTACAACAGTTTGCAGATAATGAT < 41bp 1 0.665499451328833 1 0.143329828977585 experiment 0.669001097342334 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118861674 chr5:118861676 synonymous SNV . 0 23 hm5C_associated_SNPs_18142 0 0 1 0 2 HSD17B4 chr5:118861718 5'GT 118861718 Upstream 43bp
chr6 30866764 30866764 1 + G A CESC 30866775 + 30866755 30866795 41 CTCACCGACGAGCAGGTCATCGAGAACGCGGGGGAGTTCTT CTCACCGACAAGCAGGTCATCGAGAACGCGGGGGAGTTCTT < 41bp 1 0.764087497671612 1 0.609445512294769 experiment 0.471825004656775 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control DDR1 ENSG00000204580 CDS Human protein_coding chr6:30866775 chr6:30866764 nonsynonymous SNV 0.961 4 10 hm5C_associated_SNPs_18143 0 0 0 0 2 DDR1 chr6:30866665 3'AG 30866665 Downstream 100bp
chr6 30866764 30866764 1 + G A CESC 30866775 + 30866755 30866795 41 CTCACCGACGAGCAGGTCATCGAGAACGCGGGGGAGTTCTT CTCACCGACAAGCAGGTCATCGAGAACGCGGGGGAGTTCTT < 41bp 1 0.764087497671612 1 0.609445512294769 experiment 0.471825004656775 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control DDR1 ENSG00000204580 CDS Human protein_coding chr6:30866775 chr6:30866764 nonsynonymous SNV 0.961 4 10 hm5C_associated_SNPs_18143 0 0 0 0 2 DDR1 chr6:30866814 5'GT 30866814 Upstream 51bp
chr19 41135382 41135382 1 + G A CESC 41135396 + 41135376 41135416 41 CCTTCCGCTGCATCTGCCGCCCGGGATTCGCACCCACGCAC CCTTCCACTGCATCTGCCGCCCGGGATTCGCACCCACGCAC < 41bp 1 0.58263227163505 1 0.865509033203125 experiment 0.834735456729901 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41135396 chr19:41135382 nonsynonymous SNV 0.982 2 7 hm5C_associated_SNPs_18144 0 0 1 0 1 LTBP4 chr19:41135301 3'AG 41135301 Downstream 82bp
chr16 30081525 30081525 1 + G A CESC 30081505 + 30081485 30081525 41 TGGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACG TGGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACA < 41bp 1 0.059388506920577 1 0.0350784957408905 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081505 chr16:30081525 nonsynonymous SNV 0.978 2 41 hm5C_associated_SNPs_18145 0 0 1 0 1 ALDOA chr16:30081438 3'AG 30081438 Downstream 88bp
chr16 30081525 30081525 1 + G A CESC 30081506 + 30081486 30081526 41 GGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGC GGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACAC < 41bp 1 0.0595919202653478 1 0.0503954589366913 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081506 chr16:30081525 nonsynonymous SNV 0.978 2 40 hm5C_associated_SNPs_18146 0 0 1 0 1 ALDOA chr16:30081438 3'AG 30081438 Downstream 88bp
chr16 30081525 30081525 1 + G A CESC 30081507 + 30081487 30081527 41 GGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGCC GGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACACC < 41bp 1 0.178440886133824 1 0.0756585001945496 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081507 chr16:30081525 nonsynonymous SNV 0.978 2 39 hm5C_associated_SNPs_18147 0 0 1 0 1 ALDOA chr16:30081438 3'AG 30081438 Downstream 88bp
chr16 30081525 30081525 1 + G A CESC 30081509 + 30081489 30081529 41 GCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGCCTA GCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACACCTA < 41bp 1 0.433478674906766 1 0.192023694515228 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081509 chr16:30081525 nonsynonymous SNV 0.978 2 37 hm5C_associated_SNPs_18148 0 0 1 0 1 ALDOA chr16:30081438 3'AG 30081438 Downstream 88bp
chr7 133682272 133682272 1 + C T CESC 133682278 + 133682258 133682298 41 TCAAGACAGCCACACGAACACGGATCTCCCCCCAGTGTCAG TCAAGACAGCCACATGAACACGGATCTCCCCCCAGTGTCAG < 41bp 1 0.408394658097704 1 0.276822656393051 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133682278 chr7:133682272 nonsynonymous SNV 0.031 0 15 hm5C_associated_SNPs_18149 0 0 1 0 1 EXOC4 chr7:133682245 3'AG 133682245 Downstream 28bp
chr4 1017612 1017612 1 + G A CESC 1017627 + 1017607 1017647 41 CGACCGCGCTTCACACAGCCCTCCAAGATGAGGCGCCGGGT CGACCACGCTTCACACAGCCCTCCAAGATGAGGCGCCGGGT < 41bp 1 0.714030445706926 1 0.945183753967285 experiment 0.571939108586148 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control FGFRL1 ENSG00000127418 CDS Human protein_coding chr4:1017627 chr4:1017612 synonymous SNV . 0 6 hm5C_associated_SNPs_18151 0 0 0 0 1 FGFRL1 chr4:1017605 3'AG 1017605 Downstream 8bp
chr19 45851953 45851953 1 + C T CESC 45851950 + 45851930 45851970 41 CAGACCTTCTCCATGATGCCCTGCAGATCCGGGAGCAGACG CAGACCTTCTCCATGATGCCCTGTAGATCCGGGAGCAGACG < 41bp 1 0.306934925553913 1 0.0862761437892914 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLC3 ENSG00000104892 CDS Human protein_coding chr19:45851950 chr19:45851953 stopgain 1.000 0 24 hm5C_associated_SNPs_18152 0 0 0 0 2 KLC3 chr19:45851904 3'AG 45851904 Downstream 50bp
chr19 45851953 45851953 1 + C T CESC 45851950 + 45851930 45851970 41 CAGACCTTCTCCATGATGCCCTGCAGATCCGGGAGCAGACG CAGACCTTCTCCATGATGCCCTGTAGATCCGGGAGCAGACG < 41bp 1 0.306934925553913 1 0.0862761437892914 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLC3 ENSG00000104892 CDS Human protein_coding chr19:45851950 chr19:45851953 stopgain 1.000 0 24 hm5C_associated_SNPs_18152 0 0 0 0 2 KLC3 chr19:45851991 5'GT 45851991 Upstream 39bp
chr19 11548779 11548779 1 + C T CESC 11548761 + 11548741 11548781 41 GGCTATAAGCCCCTGTATATCCCCTCCAACCGGGTCAACGA GGCTATAAGCCCCTGTATATCCCCTCCAACCGGGTCAATGA < 41bp 1 0.314328676767025 1 0.086852490901947 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11548761 chr19:11548779 synonymous SNV . 0 39 hm5C_associated_SNPs_18153 0 0 1 0 2 PRKCSH chr19:11548697 3'AG 11548697 Downstream 83bp
chr19 11548779 11548779 1 + C T CESC 11548761 + 11548741 11548781 41 GGCTATAAGCCCCTGTATATCCCCTCCAACCGGGTCAACGA GGCTATAAGCCCCTGTATATCCCCTCCAACCGGGTCAATGA < 41bp 1 0.314328676767025 1 0.086852490901947 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11548761 chr19:11548779 synonymous SNV . 0 39 hm5C_associated_SNPs_18153 0 0 1 0 2 PRKCSH chr19:11548792 5'GT 11548792 Upstream 14bp
chr3 124456792 124456792 1 + C T CESC 124456785 + 124456765 124456805 41 GCACCCAAAGAACTCAGCTTCGGTGCACGTGCAGAGCTGCC GCACCCAAAGAACTCAGCTTCGGTGCATGTGCAGAGCTGCC < 41bp 1 0.365381635657857 1 0.75896692276001 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UMPS ENSG00000114491 CDS Human protein_coding chr3:124456785 chr3:124456792 nonsynonymous SNV 0.628 4 28 hm5C_associated_SNPs_18154 0 0 1 0 1 UMPS chr3:124456762 3'AG 124456762 Downstream 31bp
chr11 66238786 66238786 1 + G A CESC 66238806 + 66238786 66238826 41 GCCAACGGGGTGAAGCCAGACGTCATGCACCACATCTCCAC ACCAACGGGGTGAAGCCAGACGTCATGCACCACATCTCCAC < 41bp 1 0.735376818816856 1 0.225459843873978 experiment 0.529246362366289 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PELI3 ENSG00000174516 CDS Human protein_coding chr11:66238806 chr11:66238786 nonsynonymous SNV 0.849 4 1 hm5C_associated_SNPs_18155 0 0 0 0 1 PELI3 chr11:66238713 3'AG 66238713 Downstream 74bp
chr19 8503333 8503333 1 + G A CESC 8503319 + 8503299 8503339 41 TACTCCGAGTGGAGAAAGACCAACCAGAAAGTTCGCCTGAA TACTCCGAGTGGAGAAAGACCAACCAGAAAGTTCACCTGAA < 41bp 1 0.397580787388643 1 0.124432057142258 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8503319 chr19:8503333 nonsynonymous SNV 0.993 0 35 hm5C_associated_SNPs_18156 0 0 0 0 1 MARCH2 chr19:8503272 3'AG 8503272 Downstream 62bp
chr22 41322434 41322434 1 + T C CESC 41322444 + 41322424 41322464 41 CAGCCAGGCTTCTTGACCTTCACTGCGGCCCACATGCACCT CAGCCAGGCTCCTTGACCTTCACTGCGGCCCACATGCACCT < 41bp 1 0.326157060559291 1 0.252818197011948 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient XPNPEP3 ENSG00000196236 CDS Human protein_coding chr22:41322444 chr22:41322434 nonsynonymous SNV 0.061 1 11 hm5C_associated_SNPs_18158 0 0 1 0 1 XPNPEP3 chr22:41322467 5'GT 41322467 Upstream 34bp
chr3 130672712 130672712 1 + G A CESC 130672711 + 130672691 130672731 41 CAGCTTGACAGGTGAGACAACGCCTTGTTCTAAGGTGACAG CAGCTTGACAGGTGAGACAACACCTTGTTCTAAGGTGACAG < 41bp 1 0.60910026858976 1 0.050048291683197 experiment 0.78179946282048 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130672711 chr3:130672712 synonymous SNV . 0 22 hm5C_associated_SNPs_18160 0 0 1 0 1 ATP2C1 chr3:130672665 3'AG 130672665 Downstream 48bp
chr1 183083802 183083802 1 + C T CESC 183083799 + 183083779 183083819 41 TGTGAGAGGTGCCGAGAGAACTTCTTCCGCCTTGGCAACAA TGTGAGAGGTGCCGAGAGAACTTTTTCCGCCTTGGCAACAA < 41bp 1 0.229456653548684 1 0.100185662508011 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183083799 chr1:183083802 synonymous SNV . 0 24 hm5C_associated_SNPs_18162 0 0 1 0 1 LAMC1 chr1:183083854 5'GT 183083854 Upstream 53bp
chr1 36028876 36028876 1 + C T CESC 36028874 + 36028854 36028894 41 GATCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAGT GATCCTGATCAAGGAAGGGGCCTCCTCGCTTCTGTGCAAGT < 41bp 1 0.0200333372977342 1 0.0964355170726776 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028874 chr1:36028876 nonsynonymous SNV 0.984 1 23 hm5C_associated_SNPs_18163 0 0 1 0 1 NCDN chr1:36028803 3'AG 36028803 Downstream 74bp
chr9 131830109 131830109 1 + G A CESC 131830119 + 131830099 131830139 41 CCTGCGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGG CCTGCGGCCCAAGACCTGGGCCACAACACGGCTGGAGCTGG < 41bp 1 0.19343514590606 1 0.0623084008693695 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830119 chr9:131830109 nonsynonymous SNV 0.992 3 11 hm5C_associated_SNPs_18164 0 0 1 0 2 MIGA2 chr9:131830052 3'AG 131830052 Downstream 58bp
chr9 131830109 131830109 1 + G A CESC 131830119 + 131830099 131830139 41 CCTGCGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGG CCTGCGGCCCAAGACCTGGGCCACAACACGGCTGGAGCTGG < 41bp 1 0.19343514590606 1 0.0623084008693695 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830119 chr9:131830109 nonsynonymous SNV 0.992 3 11 hm5C_associated_SNPs_18164 0 0 1 0 2 MIGA2 chr9:131830150 5'GT 131830150 Upstream 42bp
chr9 131830109 131830109 1 + G A CESC 131830120 + 131830100 131830140 41 CTGCGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGGA CTGCGGCCCAAGACCTGGGCCACAACACGGCTGGAGCTGGA < 41bp 1 0.346335934875702 1 0.134534537792206 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830120 chr9:131830109 nonsynonymous SNV 0.992 3 10 hm5C_associated_SNPs_18165 0 0 1 0 2 MIGA2 chr9:131830052 3'AG 131830052 Downstream 58bp
chr9 131830109 131830109 1 + G A CESC 131830120 + 131830100 131830140 41 CTGCGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGGA CTGCGGCCCAAGACCTGGGCCACAACACGGCTGGAGCTGGA < 41bp 1 0.346335934875702 1 0.134534537792206 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830120 chr9:131830109 nonsynonymous SNV 0.992 3 10 hm5C_associated_SNPs_18165 0 0 1 0 2 MIGA2 chr9:131830150 5'GT 131830150 Upstream 42bp
chr5 176720870 176720870 1 + C T CESC 176720884 + 176720864 176720904 41 CATCTGCGGGAAGGAAGCAGCCTCCTTCTGTGAGATGTGCC CATCTGTGGGAAGGAAGCAGCCTCCTTCTGTGAGATGTGCC < 41bp 1 0.0194042175836021 1 0.128821194171906 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176720884 chr5:176720870 synonymous SNV . 0 7 hm5C_associated_SNPs_18166 0 0 1 0 1 NSD1 chr5:176720833 3'AG 176720833 Downstream 38bp
chr1 161138793 161138793 1 + A C CESC 161138789 + 161138769 161138809 41 TGCTTCCTCTGCAGGGCGGACCCCACAGCCAGACTCAGCAC TGCTTCCTCTGCAGGGCGGACCCCCCAGCCAGACTCAGCAC < 41bp 1 0.0722066265913075 1 0.0313831567764282 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPOX ENSG00000143224 CDS Human protein_coding chr1:161138789 chr1:161138793 synonymous SNV . 0 25 hm5C_associated_SNPs_18167 0 0 1 0 1 PPOX chr1:161138783 3'AG 161138783 Downstream 11bp
chr1 161138793 161138793 1 + A C CESC 161138790 + 161138770 161138810 41 GCTTCCTCTGCAGGGCGGACCCCACAGCCAGACTCAGCACT GCTTCCTCTGCAGGGCGGACCCCCCAGCCAGACTCAGCACT < 41bp 1 0.0704472170081651 1 0.135369300842285 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPOX ENSG00000143224 CDS Human protein_coding chr1:161138790 chr1:161138793 synonymous SNV . 0 24 hm5C_associated_SNPs_18168 0 0 1 0 1 PPOX chr1:161138783 3'AG 161138783 Downstream 11bp
chr1 161138793 161138793 1 + A C CESC 161138791 + 161138771 161138811 41 CTTCCTCTGCAGGGCGGACCCCACAGCCAGACTCAGCACTC CTTCCTCTGCAGGGCGGACCCCCCAGCCAGACTCAGCACTC < 41bp 1 0.681828466383487 1 0.403098791837692 experiment 0.636343067233025 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPOX ENSG00000143224 CDS Human protein_coding chr1:161138791 chr1:161138793 synonymous SNV . 0 23 hm5C_associated_SNPs_18169 0 0 1 0 1 PPOX chr1:161138783 3'AG 161138783 Downstream 11bp
chr1 161138793 161138793 1 + A C CESC 161138792 + 161138772 161138812 41 TTCCTCTGCAGGGCGGACCCCACAGCCAGACTCAGCACTCA TTCCTCTGCAGGGCGGACCCCCCAGCCAGACTCAGCACTCA < 41bp 1 0.187759579528808 1 0.339924395084381 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPOX ENSG00000143224 CDS Human protein_coding chr1:161138792 chr1:161138793 synonymous SNV . 0 22 hm5C_associated_SNPs_18170 0 0 1 0 1 PPOX chr1:161138783 3'AG 161138783 Downstream 11bp
chr1 110456949 110456949 1 + G A CESC 110456962 + 110456942 110456982 41 AGGTGTCGGAGTACTGTAGCCACATGATTGGGAGTGGACAC AGGTGTCAGAGTACTGTAGCCACATGATTGGGAGTGGACAC < 41bp 1 0.473646224718251 1 0.358493447303772 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110456962 chr1:110456949 synonymous SNV . 0 8 hm5C_associated_SNPs_18174 0 0 1 0 2 CSF1 chr1:110456881 3'AG 110456881 Downstream 69bp
chr1 110456949 110456949 1 + G A CESC 110456962 + 110456942 110456982 41 AGGTGTCGGAGTACTGTAGCCACATGATTGGGAGTGGACAC AGGTGTCAGAGTACTGTAGCCACATGATTGGGAGTGGACAC < 41bp 1 0.473646224718251 1 0.358493447303772 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110456962 chr1:110456949 synonymous SNV . 0 8 hm5C_associated_SNPs_18174 0 0 1 0 2 CSF1 chr1:110457003 5'GT 110457003 Upstream 55bp
chr1 17272857 17272857 1 + G A CESC 17272843 + 17272823 17272863 41 GACTCCCTGTCCAAGCTGAGCGCCCTCAACGAGAGCCTTGC GACTCCCTGTCCAAGCTGAGCGCCCTCAACGAGAACCTTGC < 41bp 1 0.131779163811446 1 0.0522530972957611 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CROCC ENSG00000058453 CDS Human protein_coding chr1:17272843 chr1:17272857 nonsynonymous SNV 0.993 0 35 hm5C_associated_SNPs_18175 0 0 0 0 1 CROCC chr1:17272900 5'GT 17272900 Upstream 44bp
chr9 101777773 101777773 1 + G A CESC 101777755 + 101777735 101777775 41 GCTGCAACCGAAGTGTCCCTCAGTACTTTTGAGGATGAGGA GCTGCAACCGAAGTGTCCCTCAGTACTTTTGAGGATGAAGA < 41bp 1 0.238391508762954 1 0.749725818634033 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101777755 chr9:101777773 synonymous SNV . 0 39 hm5C_associated_SNPs_18176 0 0 0 0 1 COL15A1 chr9:101777848 5'GT 101777848 Upstream 76bp
chr10 75529148 75529148 1 + G A CESC 75529135 + 75529115 75529155 41 TTTACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCAT TTTACACCAGCTGTGCAGGGCAGCGTCGGCTCCACATCCAT < 41bp 1 0.464358821910682 1 0.0707845389842987 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529135 chr10:75529148 nonsynonymous SNV 1.000 5 34 hm5C_associated_SNPs_18177 0 0 1 0 2 SEC24C chr10:75529105 3'AG 75529105 Downstream 44bp
chr10 75529148 75529148 1 + G A CESC 75529135 + 75529115 75529155 41 TTTACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCAT TTTACACCAGCTGTGCAGGGCAGCGTCGGCTCCACATCCAT < 41bp 1 0.464358821910682 1 0.0707845389842987 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529135 chr10:75529148 nonsynonymous SNV 1.000 5 34 hm5C_associated_SNPs_18177 0 0 1 0 2 SEC24C chr10:75529243 5'GT 75529243 Upstream 96bp
chr10 75529148 75529148 1 + G A CESC 75529138 + 75529118 75529158 41 ACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCATAAT ACACCAGCTGTGCAGGGCAGCGTCGGCTCCACATCCATAAT < 41bp 1 0.444468897513628 1 0.157404214143753 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529138 chr10:75529148 nonsynonymous SNV 1.000 5 31 hm5C_associated_SNPs_18178 0 0 1 0 2 SEC24C chr10:75529105 3'AG 75529105 Downstream 44bp
chr10 75529148 75529148 1 + G A CESC 75529138 + 75529118 75529158 41 ACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCATAAT ACACCAGCTGTGCAGGGCAGCGTCGGCTCCACATCCATAAT < 41bp 1 0.444468897513628 1 0.157404214143753 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529138 chr10:75529148 nonsynonymous SNV 1.000 5 31 hm5C_associated_SNPs_18178 0 0 1 0 2 SEC24C chr10:75529243 5'GT 75529243 Upstream 96bp
chr10 75529148 75529148 1 + G A CESC 75529146 + 75529126 75529166 41 TGTGCAGGGCAGCGTCGGCTCCGCATCCATAATCTGGCCCT TGTGCAGGGCAGCGTCGGCTCCACATCCATAATCTGGCCCT < 41bp 1 0.662398341297286 1 0.0904598236083984 experiment 0.675203317405428 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529146 chr10:75529148 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_18179 0 0 1 0 2 SEC24C chr10:75529105 3'AG 75529105 Downstream 44bp
chr10 75529148 75529148 1 + G A CESC 75529146 + 75529126 75529166 41 TGTGCAGGGCAGCGTCGGCTCCGCATCCATAATCTGGCCCT TGTGCAGGGCAGCGTCGGCTCCACATCCATAATCTGGCCCT < 41bp 1 0.662398341297286 1 0.0904598236083984 experiment 0.675203317405428 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529146 chr10:75529148 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_18179 0 0 1 0 2 SEC24C chr10:75529243 5'GT 75529243 Upstream 96bp
chrX 153696534 153696534 1 + C T CESC 153696529 + 153696509 153696549 41 ACGCCGTGCGCGTGCTCTTCCCGGGCATCGAGGCCCACCCG ACGCCGTGCGCGTGCTCTTCCCGGGTATCGAGGCCCACCCG < 41bp 1 0.680403201101827 1 0.869066655635834 experiment 0.639193597796346 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696529 chrX:153696534 synonymous SNV . 0 26 hm5C_associated_SNPs_18184 0 0 1 0 1 PLXNA3 chrX:153696567 5'GT 153696567 Upstream 34bp
chrX 153696534 153696534 1 + C T CESC 153696537 + 153696517 153696557 41 CGCGTGCTCTTCCCGGGCATCGAGGCCCACCCGGTGCTCAA CGCGTGCTCTTCCCGGGTATCGAGGCCCACCCGGTGCTCAA < 41bp 1 0.737871310350885 1 0.968725442886353 experiment 0.524257379298229 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696537 chrX:153696534 synonymous SNV . 0 18 hm5C_associated_SNPs_18185 0 0 1 0 1 PLXNA3 chrX:153696567 5'GT 153696567 Upstream 34bp
chr13 28854631 28854631 1 + G T CESC 28854635 + 28854615 28854655 41 ATTTTATACTCAATTGGATGCTGCTCAAATGAGAAATGATG ATTTTATACTCAATTGTATGCTGCTCAAATGAGAAATGATG < 41bp 1 0.183218753889851 1 0.0607247948646545 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAN3 ENSG00000152520 CDS Human protein_coding chr13:28854635 chr13:28854631 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_18186 0 0 1 0 2 PAN3 chr13:28854549 3'AG 28854549 Downstream 83bp
chr13 28854631 28854631 1 + G T CESC 28854635 + 28854615 28854655 41 ATTTTATACTCAATTGGATGCTGCTCAAATGAGAAATGATG ATTTTATACTCAATTGTATGCTGCTCAAATGAGAAATGATG < 41bp 1 0.183218753889851 1 0.0607247948646545 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAN3 ENSG00000152520 CDS Human protein_coding chr13:28854635 chr13:28854631 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_18186 0 0 1 0 2 PAN3 chr13:28854678 5'GT 28854678 Upstream 48bp
chr20 62562222 62562222 1 + G A CESC 62562230 + 62562210 62562250 41 TTTGTCTTCTGCGGCCTCCTCACGTGCTGCTACTGCTGCTG TTTGTCTTCTGCAGCCTCCTCACGTGCTGCTACTGCTGCTG < 41bp 1 0.610954571641272 1 0.430665254592896 experiment 0.778090856717455 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJC5 ENSG00000101152 CDS Human protein_coding chr20:62562230 chr20:62562222 nonsynonymous SNV 0.754 1 13 hm5C_associated_SNPs_18187 0 0 1 6 1 DNAJC5 chr20:62562204 3'AG 62562204 Downstream 19bp
chr18 9525743 9525743 1 + G A CESC 9525724 + 9525704 9525744 41 CATTTGCTTTCTAGGAGTTTCTTTTGAATTGTTTACATCGA CATTTGCTTTCTAGGAGTTTCTTTTGAATTGTTTACATCAA < 41bp 1 0.0622567612054042 1 0.284449994564056 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RALBP1 ENSG00000017797 CDS Human protein_coding chr18:9525724 chr18:9525743 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_18188 0 0 1 0 1 RALBP1 chr18:9525718 3'AG 9525718 Downstream 26bp
chr16 5123019 5123019 1 + G T CESC 5123009 + 5122989 5123029 41 AATTCAGATTGTGGGGTTGACAGAACTTCAGAGTCTTGCAG AATTCAGATTGTGGGGTTGACAGAACTTCATAGTCTTGCAG < 41bp 1 0.684791934860505 1 0.373697221279144 experiment 0.630416130278989 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5123009 chr16:5123019 nonsynonymous SNV 0.078 1 31 hm5C_associated_SNPs_18189 0 0 1 0 2 ALG1 chr16:5122952 3'AG 5122952 Downstream 68bp
chr16 5123019 5123019 1 + G T CESC 5123009 + 5122989 5123029 41 AATTCAGATTGTGGGGTTGACAGAACTTCAGAGTCTTGCAG AATTCAGATTGTGGGGTTGACAGAACTTCATAGTCTTGCAG < 41bp 1 0.684791934860505 1 0.373697221279144 experiment 0.630416130278989 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5123009 chr16:5123019 nonsynonymous SNV 0.078 1 31 hm5C_associated_SNPs_18189 0 0 1 0 2 ALG1 chr16:5123029 5'GT 5123029 Upstream 11bp
chr10 72326419 72326419 1 + C T CESC 72326417 + 72326397 72326437 41 AGCGGGGAGGACCAGCCCTTCTCCAGGCTGCGCTACCGGTG AGCGGGGAGGACCAGCCCTTCTTCAGGCTGCGCTACCGGTG < 41bp 1 0.548413186490362 1 0.544948160648346 experiment 0.903173627019276 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72326417 chr10:72326419 nonsynonymous SNV 0.974 2 23 hm5C_associated_SNPs_18190 0 0 0 0 1 PALD1 chr10:72326337 3'AG 72326337 Downstream 83bp
chr18 21474930 21474930 1 + C T CESC 21474924 + 21474904 21474944 41 ACCTGGCCACCATGGGCGAGCAGCTCCGCCTGGTCAAGTCT ACCTGGCCACCATGGGCGAGCAGCTCTGCCTGGTCAAGTCT < 41bp 1 0.199358178184979 1 0.118142873048782 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21474924 chr18:21474930 nonsynonymous SNV 0.975 2 27 hm5C_associated_SNPs_18192 0 0 0 0 1 LAMA3 chr18:21474871 3'AG 21474871 Downstream 60bp
chr11 61584165 61584165 1 + C T CESC 61584155 + 61584135 61584175 41 CTCGCACCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGT CTCGCACCCTGAGCGCTGGGCCACCTCGTCTCAGGTGAAGT < 41bp 1 0.0255704839009358 1 0.0794890820980072 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584155 chr11:61584165 stopgain 0.984 0 31 hm5C_associated_SNPs_18197 0 0 0 0 1 FADS1;FADS2 chr11:61584168 5'GT 61584168 Upstream 4bp
chr11 61584165 61584165 1 + C T CESC 61584156 + 61584136 61584176 41 TCGCACCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTA TCGCACCCTGAGCGCTGGGCCACCTCGTCTCAGGTGAAGTA < 41bp 1 0.186920652665544 1 0.086810439825058 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584156 chr11:61584165 stopgain 0.984 0 30 hm5C_associated_SNPs_18198 0 0 0 0 1 FADS1;FADS2 chr11:61584168 5'GT 61584168 Upstream 4bp
chr11 61584165 61584165 1 + C T CESC 61584158 + 61584138 61584178 41 GCACCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGC GCACCCTGAGCGCTGGGCCACCTCGTCTCAGGTGAAGTAGC < 41bp 1 0.0825866715090332 1 0.0400795340538025 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584158 chr11:61584165 stopgain 0.984 0 28 hm5C_associated_SNPs_18199 0 0 0 0 1 FADS1;FADS2 chr11:61584168 5'GT 61584168 Upstream 4bp
chr11 61584165 61584165 1 + C T CESC 61584159 + 61584139 61584179 41 CACCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGCG CACCCTGAGCGCTGGGCCACCTCGTCTCAGGTGAAGTAGCG < 41bp 1 0.478231508587636 1 0.217941403388977 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584159 chr11:61584165 stopgain 0.984 0 27 hm5C_associated_SNPs_18200 0 0 0 0 1 FADS1;FADS2 chr11:61584168 5'GT 61584168 Upstream 4bp
chr11 61584165 61584165 1 + C T CESC 61584161 + 61584141 61584181 41 CCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGCGCG CCCTGAGCGCTGGGCCACCTCGTCTCAGGTGAAGTAGCGCG < 41bp 1 0.348865613499861 1 0.395815461874008 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584161 chr11:61584165 stopgain 0.984 0 25 hm5C_associated_SNPs_18201 0 0 0 0 1 FADS1;FADS2 chr11:61584168 5'GT 61584168 Upstream 4bp
chr11 61584165 61584165 1 + C T CESC 61584164 + 61584144 61584184 41 TGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGCGCGGGG TGAGCGCTGGGCCACCTCGTCTCAGGTGAAGTAGCGCGGGG < 41bp 1 0.693257800944591 1 0.740859925746918 experiment 0.613484398110817 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584164 chr11:61584165 stopgain 0.984 0 22 hm5C_associated_SNPs_18202 0 0 0 0 1 FADS1;FADS2 chr11:61584168 5'GT 61584168 Upstream 4bp
chr11 763836 763836 1 + G A CESC 763823 + 763803 763843 41 ATTGTCATGGGCGCCTCCTTCCGCAACACGGGCGAGATCAA ATTGTCATGGGCGCCTCCTTCCGCAACACGGGCAAGATCAA < 41bp 1 0.744762736760841 1 0.807661235332489 experiment 0.510474526478319 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TALDO1 ENSG00000177156 CDS Human protein_coding chr11:763823 chr11:763836 nonsynonymous SNV 1.000 5 34 hm5C_associated_SNPs_18204 0 0 1 0 1 TALDO1 chr11:763747 3'AG 763747 Downstream 90bp
chr21 47983779 47983779 1 + C T CESC 47983797 + 47983777 47983817 41 CCCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG CCTGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG < 41bp 1 0.35250351268666 1 0.320117086172104 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47983797 chr21:47983779 synonymous SNV . 0 3 hm5C_associated_SNPs_18205 0 0 1 0 2 DIP2A chr21:47983771 3'AG 47983771 Downstream 9bp
chr21 47983779 47983779 1 + C T CESC 47983797 + 47983777 47983817 41 CCCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG CCTGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG < 41bp 1 0.35250351268666 1 0.320117086172104 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47983797 chr21:47983779 synonymous SNV . 0 3 hm5C_associated_SNPs_18205 0 0 1 0 2 DIP2A chr21:47983845 5'GT 47983845 Upstream 67bp
chr20 43530427 43530427 1 + C T CESC 43530409 + 43530389 43530429 41 AGAGGAATGAGAAGAAGCAGCAGATGGGCAAAGAGTACCGT AGAGGAATGAGAAGAAGCAGCAGATGGGCAAAGAGTACTGT < 41bp 1 0.585800781498548 1 0.473661184310913 experiment 0.828398437002904 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout YWHAB ENSG00000166913 CDS Human protein_coding chr20:43530409 chr20:43530427 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_18206 0 0 1 0 1 YWHAB chr20:43530474 5'GT 43530474 Upstream 48bp
chr15 57545637 57545637 1 + C T CESC 57545632 + 57545612 57545652 41 CAATTCAAACTATGGAGGATCAAGCCTTGTTGCAAGCAGTC CAATTCAAACTATGGAGGATCAAGCTTTGTTGCAAGCAGTC < 41bp 1 0.270903540386392 1 0.409963518381119 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57545632 chr15:57545637 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_18208 0 0 1 0 1 TCF12 chr15:57545666 5'GT 57545666 Upstream 30bp
chr3 62229570 62229570 1 + C T CESC 62229569 + 62229549 62229589 41 GTATCCCTATTATTCCTATTCCGGGTAAGTAAGACACTGCT GTATCCCTATTATTCCTATTCTGGGTAAGTAAGACACTGCT < 41bp 1 0.41779269593649 1 0.85838782787323 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:62229569 chr3:62229570 nonsynonymous SNV 0.983 2 22 hm5C_associated_SNPs_18209 0 0 1 0 2 PTPRG chr3:62229481 3'AG 62229481 Downstream 90bp
chr3 62229570 62229570 1 + C T CESC 62229569 + 62229549 62229589 41 GTATCCCTATTATTCCTATTCCGGGTAAGTAAGACACTGCT GTATCCCTATTATTCCTATTCTGGGTAAGTAAGACACTGCT < 41bp 1 0.41779269593649 1 0.85838782787323 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:62229569 chr3:62229570 nonsynonymous SNV 0.983 2 22 hm5C_associated_SNPs_18209 0 0 1 0 2 PTPRG chr3:62229572 5'GT 62229572 Upstream 3bp
chr16 731835 731835 1 + C T CESC 731817 + 731797 731837 41 CTGGAAGAGTGCCAGCGAAACCACGAGGGTGATGAGGACGA CTGGAAGAGTGCCAGCGAAACCACGAGGGTGATGAGGATGA < 41bp 1 0.349380601510293 1 0.119238704442978 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STUB1 ENSG00000103266 CDS Human protein_coding chr16:731817 chr16:731835 synonymous SNV . 0 39 hm5C_associated_SNPs_18210 0 0 1 0 2 STUB1 chr16:731793 3'AG 731793 Downstream 43bp
chr16 731835 731835 1 + C T CESC 731817 + 731797 731837 41 CTGGAAGAGTGCCAGCGAAACCACGAGGGTGATGAGGACGA CTGGAAGAGTGCCAGCGAAACCACGAGGGTGATGAGGATGA < 41bp 1 0.349380601510293 1 0.119238704442978 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STUB1 ENSG00000103266 CDS Human protein_coding chr16:731817 chr16:731835 synonymous SNV . 0 39 hm5C_associated_SNPs_18210 0 0 1 0 2 STUB1 chr16:731880 5'GT 731880 Upstream 46bp
chr9 36633156 36633156 1 + C T CESC 36633167 + 36633147 36633187 41 TGGATCATGCAAGATTACAACTATCCTGTTGAGTGGCAAAG TGGATCATGTAAGATTACAACTATCCTGTTGAGTGGCAAAG < 41bp 1 0.114169914258364 1 0.0604482889175415 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MELK ENSG00000165304 CDS Human protein_coding chr9:36633167 chr9:36633156 stopgain 1.000 1 10 hm5C_associated_SNPs_18211 0 0 1 0 2 MELK chr9:36633099 3'AG 36633099 Downstream 58bp
chr9 36633156 36633156 1 + C T CESC 36633167 + 36633147 36633187 41 TGGATCATGCAAGATTACAACTATCCTGTTGAGTGGCAAAG TGGATCATGTAAGATTACAACTATCCTGTTGAGTGGCAAAG < 41bp 1 0.114169914258364 1 0.0604482889175415 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MELK ENSG00000165304 CDS Human protein_coding chr9:36633167 chr9:36633156 stopgain 1.000 1 10 hm5C_associated_SNPs_18211 0 0 1 0 2 MELK chr9:36633197 5'GT 36633197 Upstream 42bp
chr10 101515387 101515387 1 + C T CESC 101515406 + 101515386 101515426 41 TCATCTGTTGCCATGGGAGCCTCACTTTCTTGCTCAGAATA TTATCTGTTGCCATGGGAGCCTCACTTTCTTGCTCAGAATA < 41bp 1 0.272461339611126 1 0.126042127609253 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUTC ENSG00000119929 CDS Human protein_coding chr10:101515406 chr10:101515387 nonsynonymous SNV 0.992 0 2 hm5C_associated_SNPs_18212 0 0 1 0 1 CUTC chr10:101515382 3'AG 101515382 Downstream 6bp
chr1 38484942 38484942 1 + G A CESC 38484930 + 38484910 38484950 41 TGTCTTGAATTTTAGTTGAACAGTTTGATGTCGCAACTCAC TGTCTTGAATTTTAGTTGAACAGTTTGATGTCACAACTCAC < 41bp 1 0.212517797885004 1 0.0604843497276306 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UTP11 ENSG00000183520 CDS Human protein_coding chr1:38484930 chr1:38484942 nonsynonymous SNV 0.973 4 33 hm5C_associated_SNPs_18213 0 0 1 0 1 UTP11 chr1:38484925 3'AG 38484925 Downstream 18bp
chr11 5624571 5624571 1 + G A CESC 5624588 + 5624568 5624608 41 TACGAGAAGAGGTGACCTGCCCTATCTGCCTGGAGCTCCTA TACAAGAAGAGGTGACCTGCCCTATCTGCCTGGAGCTCCTA < 41bp 1 0.11379478365575 1 0.0897882878780365 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM6;TRIM6-TRIM34 ENSG00000121236;ENSG00000258588 CDS Human other chr11:5624588 chr11:5624571 nonsynonymous SNV 0.819 1 4 hm5C_associated_SNPs_18217 0 0 0 0 1 TRIM6;TRIM6-TRIM34 chr11:5624476 3'AG 5624476 Downstream 96bp
chr6 3267832 3267832 1 + G T CESC 3267826 + 3267806 3267846 41 ATGTGTTTTCTCTTTTTAGCCAGGAAGACCAACAAACAGGT ATGTGTTTTCTCTTTTTAGCCAGGAATACCAACAAACAGGT < 41bp 1 0.785003068953233 1 0.776026964187622 experiment 0.429993862093535 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMG4 ENSG00000180822 CDS Human protein_coding chr6:3267826 chr6:3267832 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_18219 0 0 1 0 1 PSMG4 chr6:3267825 3'AG 3267825 Downstream 8bp
chr11 94554930 94554930 1 + C T CESC 94554949 + 94554929 94554969 41 ACCGGGTGCTTCACCAGGAACTTCAGGGTTACTACGACAAT ATCGGGTGCTTCACCAGGAACTTCAGGGTTACTACGACAAT < 41bp 1 0.302720137067139 1 0.0708515644073486 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94554949 chr11:94554930 synonymous SNV . 0 2 hm5C_associated_SNPs_18222 0 0 1 0 1 AMOTL1 chr11:94554987 5'GT 94554987 Upstream 58bp
chr2 157407249 157407249 1 + G A CESC 157407233 + 157407213 157407253 41 GCCAGCCAAGTGCTGGTGTCCATATTGTGATGCCTGGTTAT GCCAGCCAAGTGCTGGTGTCCATATTGTGATGCCTGATTAT < 41bp 1 0.144308249846649 1 0.275337010622025 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407233 chr2:157407249 nonsynonymous SNV 0.983 1 37 hm5C_associated_SNPs_18225 0 0 1 3 1 GPD2 chr2:157407258 5'GT 157407258 Upstream 10bp
chr1 161132171 161132171 1 + C A CESC 161132159 + 161132139 161132179 41 AAGAGGTGCCTGGAGGAGGCCGAGCCCAAGAGCTCACTGAA AAGAGGTGCCTGGAGGAGGCCGAGCCCAAGAGATCACTGAA < 41bp 1 0.420179011902257 1 0.685475170612335 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161132159 chr1:161132171 nonsynonymous SNV 0.989 1 33 hm5C_associated_SNPs_18227 0 0 1 0 1 USP21 chr1:161132180 5'GT 161132180 Upstream 10bp
chr1 114514527 114514527 1 + G A CESC 114514546 + 114514526 114514566 41 CGAGCTCAACGCGGGGGGACCAGTGCAGCACAACCACTCAA CAAGCTCAACGCGGGGGGACCAGTGCAGCACAACCACTCAA < 41bp 1 0.532080432561213 1 0.688127517700195 experiment 0.935839134877574 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114514546 chr1:114514527 nonsynonymous SNV 0.915 4 2 hm5C_associated_SNPs_18228 0 0 1 0 2 HIPK1 chr1:114514446 3'AG 114514446 Downstream 82bp
chr1 114514527 114514527 1 + G A CESC 114514546 + 114514526 114514566 41 CGAGCTCAACGCGGGGGGACCAGTGCAGCACAACCACTCAA CAAGCTCAACGCGGGGGGACCAGTGCAGCACAACCACTCAA < 41bp 1 0.532080432561213 1 0.688127517700195 experiment 0.935839134877574 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114514546 chr1:114514527 nonsynonymous SNV 0.915 4 2 hm5C_associated_SNPs_18228 0 0 1 0 2 HIPK1 chr1:114514576 5'GT 114514576 Upstream 50bp
chr15 89172590 89172590 1 + G A CESC 89172606 + 89172586 89172626 41 CCCGGCCTCCACACCCGGGCCCGGGTCTCTCTAAAGGACCT CCCGACCTCCACACCCGGGCCCGGGTCTCTCTAAAGGACCT < 41bp 1 0.375734203704407 1 0.234626233577728 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AEN ENSG00000181026 CDS Human protein_coding chr15:89172606 chr15:89172590 nonsynonymous SNV 0.003 0 5 hm5C_associated_SNPs_18231 0 0 1 0 1 AEN chr15:89172657 5'GT 89172657 Upstream 68bp
chr16 67314354 67314354 1 + C T CESC 67314349 + 67314329 67314369 41 GTAGGGGACCCAGGTCCAAGCAGGGCGATGCCATCTGGCTT GTAGGGGACCCAGGTCCAAGCAGGGTGATGCCATCTGGCTT < 41bp 1 0.784630475962882 1 0.906008124351501 experiment 0.430739048074236 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67314349 chr16:67314354 nonsynonymous SNV 0.000 0 26 hm5C_associated_SNPs_18233 0 0 1 0 2 PLEKHG4 chr16:67314299 3'AG 67314299 Downstream 56bp
chr16 67314354 67314354 1 + C T CESC 67314349 + 67314329 67314369 41 GTAGGGGACCCAGGTCCAAGCAGGGCGATGCCATCTGGCTT GTAGGGGACCCAGGTCCAAGCAGGGTGATGCCATCTGGCTT < 41bp 1 0.784630475962882 1 0.906008124351501 experiment 0.430739048074236 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67314349 chr16:67314354 nonsynonymous SNV 0.000 0 26 hm5C_associated_SNPs_18233 0 0 1 0 2 PLEKHG4 chr16:67314446 5'GT 67314446 Upstream 93bp
chr7 138944052 138944052 1 + C T CESC 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TTGAGATGAAGAAGTGGAAGCGGAAAGAGGAAGGGGAAAAG < 41bp 1 0.48847045831158 1 0.653716802597046 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944052 nonsynonymous SNV 0.996 4 15 hm5C_associated_SNPs_18234 0 0 1 0 2 UBN2 chr7:138944013 3'AG 138944013 Downstream 40bp
chr7 138944052 138944052 1 + C T CESC 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TTGAGATGAAGAAGTGGAAGCGGAAAGAGGAAGGGGAAAAG < 41bp 1 0.48847045831158 1 0.653716802597046 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944052 nonsynonymous SNV 0.996 4 15 hm5C_associated_SNPs_18234 0 0 1 0 2 UBN2 chr7:138944116 5'GT 138944116 Upstream 65bp
chr17 78082385 78082385 1 + G A CESC 78082382 + 78082362 78082402 41 ACCCGCCAGGTGGTGGAGAACATGACCAGGGCCCACTTCCC ACCCGCCAGGTGGTGGAGAACATAACCAGGGCCCACTTCCC < 41bp 1 0.560434361216999 1 0.127272248268127 experiment 0.879131277566003 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082382 chr17:78082385 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_18236 0 0 0 0 2 GAA chr17:78082288 3'AG 78082288 Downstream 98bp
chr17 78082385 78082385 1 + G A CESC 78082382 + 78082362 78082402 41 ACCCGCCAGGTGGTGGAGAACATGACCAGGGCCCACTTCCC ACCCGCCAGGTGGTGGAGAACATAACCAGGGCCCACTTCCC < 41bp 1 0.560434361216999 1 0.127272248268127 experiment 0.879131277566003 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082382 chr17:78082385 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_18236 0 0 0 0 2 GAA chr17:78082406 5'GT 78082406 Upstream 22bp
chr17 78082385 78082385 1 + G A CESC 78082400 + 78082380 78082420 41 AACATGACCAGGGCCCACTTCCCCCTGGTGAGTTGGGGTGG AACATAACCAGGGCCCACTTCCCCCTGGTGAGTTGGGGTGG < 41bp 1 0.284838324148512 1 0.433907806873322 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082400 chr17:78082385 nonsynonymous SNV 0.995 4 6 hm5C_associated_SNPs_18237 0 0 0 0 2 GAA chr17:78082288 3'AG 78082288 Downstream 98bp
chr17 78082385 78082385 1 + G A CESC 78082400 + 78082380 78082420 41 AACATGACCAGGGCCCACTTCCCCCTGGTGAGTTGGGGTGG AACATAACCAGGGCCCACTTCCCCCTGGTGAGTTGGGGTGG < 41bp 1 0.284838324148512 1 0.433907806873322 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082400 chr17:78082385 nonsynonymous SNV 0.995 4 6 hm5C_associated_SNPs_18237 0 0 0 0 2 GAA chr17:78082406 5'GT 78082406 Upstream 22bp
chr17 78082385 78082385 1 + G A CESC 78082404 + 78082384 78082424 41 TGACCAGGGCCCACTTCCCCCTGGTGAGTTGGGGTGGTGGC TAACCAGGGCCCACTTCCCCCTGGTGAGTTGGGGTGGTGGC < 41bp 1 0.592823179467092 1 0.320416390895844 experiment 0.814353641065816 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082404 chr17:78082385 nonsynonymous SNV 0.995 4 2 hm5C_associated_SNPs_18238 0 0 0 0 2 GAA chr17:78082288 3'AG 78082288 Downstream 98bp
chr17 78082385 78082385 1 + G A CESC 78082404 + 78082384 78082424 41 TGACCAGGGCCCACTTCCCCCTGGTGAGTTGGGGTGGTGGC TAACCAGGGCCCACTTCCCCCTGGTGAGTTGGGGTGGTGGC < 41bp 1 0.592823179467092 1 0.320416390895844 experiment 0.814353641065816 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082404 chr17:78082385 nonsynonymous SNV 0.995 4 2 hm5C_associated_SNPs_18238 0 0 0 0 2 GAA chr17:78082406 5'GT 78082406 Upstream 22bp
chr4 126398366 126398366 1 + C A CESC 126398352 + 126398332 126398372 41 AGAGTTACAGTTGGAGGTATCAGATCTCTAGAACCAATCCT AGAGTTACAGTTGGAGGTATCAGATCTCTAGAACAAATCCT < 41bp 1 0.11630752948695 1 0.788104355335236 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126398352 chr4:126398366 nonsynonymous SNV 0.583 2 35 hm5C_associated_SNPs_18239 0 0 0 0 1 FAT4 chr4:126398310 3'AG 126398310 Downstream 57bp
chr7 94057017 94057017 1 + T C CESC 94057027 + 94057007 94057047 41 CGATGGAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCAC CGATGGAGACCTCTACAGGGCTGACCAGCCTCGCTCAGCAC < 41bp 1 0.111125988654992 1 0.0191304683685303 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057027 chr7:94057017 nonsynonymous SNV 0.998 2 11 hm5C_associated_SNPs_18240 0 0 0 0 1 COL1A2 chr7:94056939 3'AG 94056939 Downstream 79bp
chr7 94057017 94057017 1 + T C CESC 94057032 + 94057012 94057052 41 GAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCACCTTCT GAGACCTCTACAGGGCTGACCAGCCTCGCTCAGCACCTTCT < 41bp 1 0.114558373058471 1 0.225317150354385 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057032 chr7:94057017 nonsynonymous SNV 0.998 2 6 hm5C_associated_SNPs_18241 0 0 0 0 1 COL1A2 chr7:94056939 3'AG 94056939 Downstream 79bp
chr6 26468224 26468224 1 + C T CESC 26468231 + 26468211 26468251 41 GATCTCTTCCTGTCAGAGGACCGGAGAAGTGTGAGAAGGTG GATCTCTTCCTGTTAGAGGACCGGAGAAGTGTGAGAAGGTG < 41bp 1 0.798016918459553 1 0.499956339597702 experiment 0.403966163080895 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26468231 chr6:26468224 nonsynonymous SNV 0.968 3 14 hm5C_associated_SNPs_18242 0 0 1 1 1 BTN2A1 chr6:26468176 3'AG 26468176 Downstream 49bp
chr17 29554588 29554588 1 + C G CESC 29554583 + 29554563 29554603 41 AATGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA AATGGGAACAAGCAACAAAGCTAATGCTTAACTATCCAAAA < 41bp 1 0.177807941256419 1 0.0828804969787598 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29554583 chr17:29554588 nonsynonymous SNV 0.999 4 26 hm5C_associated_SNPs_18244 0 0 1 0 2 NF1 chr17:29554541 3'AG 29554541 Downstream 48bp
chr17 29554588 29554588 1 + C G CESC 29554583 + 29554563 29554603 41 AATGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA AATGGGAACAAGCAACAAAGCTAATGCTTAACTATCCAAAA < 41bp 1 0.177807941256419 1 0.0828804969787598 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29554583 chr17:29554588 nonsynonymous SNV 0.999 4 26 hm5C_associated_SNPs_18244 0 0 1 0 2 NF1 chr17:29554624 5'GT 29554624 Upstream 37bp
chr11 67075201 67075201 1 + C T CESC 67075191 + 67075171 67075211 41 CTGGAGTCTCTGCGGCCTCCCAGCGCCGAGCCTGGCGGGTC CTGGAGTCTCTGCGGCCTCCCAGCGCCGAGTCTGGCGGGTC < 41bp 1 0.624726271889637 1 0.782238245010376 experiment 0.750547456220725 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075191 chr11:67075201 nonsynonymous SNV 0.018 0 31 hm5C_associated_SNPs_18245 0 0 0 0 1 SSH3 chr11:67075208 5'GT 67075208 Upstream 8bp
chr13 48937001 48937001 1 + C T CESC 48936995 + 48936975 48937015 41 GTTCACCTCGAACACCCAGGCGAGGTCAGAACAGGAGTGCA GTTCACCTCGAACACCCAGGCGAGGTTAGAACAGGAGTGCA < 41bp 1 0.693117081448509 1 0.801494300365448 experiment 0.613765837102982 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RB1 ENSG00000139687 CDS Human protein_coding chr13:48936995 chr13:48937001 stopgain 1.000 1 27 hm5C_associated_SNPs_18247 0 0 1 1 1 RB1 chr13:48936951 3'AG 48936951 Downstream 51bp
chr12 73012759 73012759 1 + C T CESC 73012771 + 73012751 73012791 41 CTGCCAGCCGAGCTCTTTATCCTCTAGATAAATTACTGGAC CTGCCAGCTGAGCTCTTTATCCTCTAGATAAATTACTGGAC < 41bp 1 0.11173261925785 1 0.345276772975922 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRHDE ENSG00000072657 CDS Human protein_coding chr12:73012771 chr12:73012759 stopgain 1.000 1 9 hm5C_associated_SNPs_18248 0 0 0 0 2 TRHDE chr12:73012671 3'AG 73012671 Downstream 89bp
chr12 73012759 73012759 1 + C T CESC 73012771 + 73012751 73012791 41 CTGCCAGCCGAGCTCTTTATCCTCTAGATAAATTACTGGAC CTGCCAGCTGAGCTCTTTATCCTCTAGATAAATTACTGGAC < 41bp 1 0.11173261925785 1 0.345276772975922 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRHDE ENSG00000072657 CDS Human protein_coding chr12:73012771 chr12:73012759 stopgain 1.000 1 9 hm5C_associated_SNPs_18248 0 0 0 0 2 TRHDE chr12:73012818 5'GT 73012818 Upstream 60bp
chr4 502747 502747 1 + G C CESC 502758 + 502738 502778 41 TCTGCGTTTGAAAGGAAACCCGGTGAGAATTTAGGAATGTT TCTGCGTTTCAAAGGAAACCCGGTGAGAATTTAGGAATGTT < 41bp 1 0.201148216196999 1 0.362248867750168 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIGG ENSG00000174227 CDS Human protein_coding chr4:502758 chr4:502747 nonsynonymous SNV 1.000 0 10 hm5C_associated_SNPs_18250 0 0 1 0 1 PIGG chr4:502759 5'GT 502759 Upstream 13bp
chr1 22329579 22329579 1 + C T CESC 22329560 + 22329540 22329580 41 GTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCA GTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGTA < 41bp 1 0.236175618802633 1 0.0922796726226807 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329560 chr1:22329579 stopgain 1.000 0 40 hm5C_associated_SNPs_18251 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 84bp
chr1 22329579 22329579 1 + C T CESC 22329560 + 22329540 22329580 41 GTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCA GTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGTA < 41bp 1 0.236175618802633 1 0.0922796726226807 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329560 chr1:22329579 stopgain 1.000 0 40 hm5C_associated_SNPs_18251 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 3bp
chr1 22329579 22329579 1 + C T CESC 22329561 + 22329541 22329581 41 TCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAG TCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGTAG < 41bp 1 0.211137704230036 1 0.221395164728165 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329561 chr1:22329579 stopgain 1.000 0 39 hm5C_associated_SNPs_18252 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 84bp
chr1 22329579 22329579 1 + C T CESC 22329561 + 22329541 22329581 41 TCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAG TCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGTAG < 41bp 1 0.211137704230036 1 0.221395164728165 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329561 chr1:22329579 stopgain 1.000 0 39 hm5C_associated_SNPs_18252 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 3bp
chr1 22329579 22329579 1 + C T CESC 22329562 + 22329542 22329582 41 CCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGG CCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGTAGG < 41bp 1 0.0483425064514323 1 0.19636407494545 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329562 chr1:22329579 stopgain 1.000 0 38 hm5C_associated_SNPs_18253 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 84bp
chr1 22329579 22329579 1 + C T CESC 22329562 + 22329542 22329582 41 CCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGG CCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGTAGG < 41bp 1 0.0483425064514323 1 0.19636407494545 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329562 chr1:22329579 stopgain 1.000 0 38 hm5C_associated_SNPs_18253 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 3bp
chr1 22329579 22329579 1 + C T CESC 22329563 + 22329543 22329583 41 CATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGT CATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGTAGGT < 41bp 1 0.712567898934191 1 0.456911563873291 experiment 0.574864202131618 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329563 chr1:22329579 stopgain 1.000 0 37 hm5C_associated_SNPs_18254 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 84bp
chr1 22329579 22329579 1 + C T CESC 22329563 + 22329543 22329583 41 CATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGT CATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGTAGGT < 41bp 1 0.712567898934191 1 0.456911563873291 experiment 0.574864202131618 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329563 chr1:22329579 stopgain 1.000 0 37 hm5C_associated_SNPs_18254 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 3bp
chr1 22329579 22329579 1 + C T CESC 22329566 + 22329546 22329586 41 GGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAG GGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGTAGGTAAG < 41bp 1 0.558643928862266 1 0.199869513511658 experiment 0.882712142275468 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329566 chr1:22329579 stopgain 1.000 0 34 hm5C_associated_SNPs_18255 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 84bp
chr1 22329579 22329579 1 + C T CESC 22329566 + 22329546 22329586 41 GGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAG GGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGTAGGTAAG < 41bp 1 0.558643928862266 1 0.199869513511658 experiment 0.882712142275468 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329566 chr1:22329579 stopgain 1.000 0 34 hm5C_associated_SNPs_18255 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 3bp
chr1 22329579 22329579 1 + C T CESC 22329569 + 22329549 22329589 41 GAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGC GAGGATGCGGTCCCCTACAGCTGGCCCTGGTAGGTAAGAGC < 41bp 1 0.282861612873887 1 0.410171777009964 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329569 chr1:22329579 stopgain 1.000 0 31 hm5C_associated_SNPs_18256 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 84bp
chr1 22329579 22329579 1 + C T CESC 22329569 + 22329549 22329589 41 GAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGC GAGGATGCGGTCCCCTACAGCTGGCCCTGGTAGGTAAGAGC < 41bp 1 0.282861612873887 1 0.410171777009964 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329569 chr1:22329579 stopgain 1.000 0 31 hm5C_associated_SNPs_18256 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 3bp
chr1 22329579 22329579 1 + C T CESC 22329573 + 22329553 22329593 41 ATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATA ATGCGGTCCCCTACAGCTGGCCCTGGTAGGTAAGAGCAATA < 41bp 1 0.110740634572652 1 0.0278286039829254 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329573 chr1:22329579 stopgain 1.000 0 27 hm5C_associated_SNPs_18257 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 84bp
chr1 22329579 22329579 1 + C T CESC 22329573 + 22329553 22329593 41 ATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATA ATGCGGTCCCCTACAGCTGGCCCTGGTAGGTAAGAGCAATA < 41bp 1 0.110740634572652 1 0.0278286039829254 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329573 chr1:22329579 stopgain 1.000 0 27 hm5C_associated_SNPs_18257 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 3bp
chr1 22329579 22329579 1 + C T CESC 22329574 + 22329554 22329594 41 TGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAG TGCGGTCCCCTACAGCTGGCCCTGGTAGGTAAGAGCAATAG < 41bp 1 0.107207661331962 1 0.0754812359809875 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329574 chr1:22329579 stopgain 1.000 0 26 hm5C_associated_SNPs_18258 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 84bp
chr1 22329579 22329579 1 + C T CESC 22329574 + 22329554 22329594 41 TGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAG TGCGGTCCCCTACAGCTGGCCCTGGTAGGTAAGAGCAATAG < 41bp 1 0.107207661331962 1 0.0754812359809875 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329574 chr1:22329579 stopgain 1.000 0 26 hm5C_associated_SNPs_18258 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 3bp
chr1 22329579 22329579 1 + C T CESC 22329575 + 22329555 22329595 41 GCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAGC GCGGTCCCCTACAGCTGGCCCTGGTAGGTAAGAGCAATAGC < 41bp 1 0.359119568088092 1 0.0726176202297211 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329575 chr1:22329579 stopgain 1.000 0 25 hm5C_associated_SNPs_18259 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 84bp
chr1 22329579 22329579 1 + C T CESC 22329575 + 22329555 22329595 41 GCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAGC GCGGTCCCCTACAGCTGGCCCTGGTAGGTAAGAGCAATAGC < 41bp 1 0.359119568088092 1 0.0726176202297211 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329575 chr1:22329579 stopgain 1.000 0 25 hm5C_associated_SNPs_18259 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 3bp
chr6 29911954 29911954 1 + G C CESC 29911960 + 29911940 29911980 41 CATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCC CATGAGGCCACCCTCAGGTGCTGGGCCCTGGGCTTCTACCC < 41bp 1 0.699293904425428 1 0.312530040740967 experiment 0.601412191149144 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911960 chr6:29911954 synonymous SNV . 0 15 hm5C_associated_SNPs_18260 0 0 0 0 1 HLA-A chr6:29911899 3'AG 29911899 Downstream 56bp
chrX 47065735 47065735 1 + G A CESC 47065738 + 47065718 47065758 41 GGCAATGTGCAGGTGGTGATCCCCTTCCTGACAGAGTCGTA GGCAATGTGCAGGTGGTAATCCCCTTCCTGACAGAGTCGTA < 41bp 1 0.39417565155998 1 0.32927805185318 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control UBA1 ENSG00000130985 CDS Human protein_coding chrX:47065738 chrX:47065735 synonymous SNV . 0 18 hm5C_associated_SNPs_18261 0 0 1 0 1 UBA1 chrX:47065647 3'AG 47065647 Downstream 89bp
chr15 77756669 77756669 1 + G A CESC 77756689 + 77756669 77756709 41 GTTGCTTCAGAGTGAGTCTTCAAATGCAGCAGAAGGCAATG ATTGCTTCAGAGTGAGTCTTCAAATGCAGCAGAAGGCAATG < 41bp 1 0.479362825202914 1 0.249027281999588 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HMG20A ENSG00000140382 CDS Human protein_coding chr15:77756689 chr15:77756669 synonymous SNV . 0 1 hm5C_associated_SNPs_18264 0 0 1 0 2 HMG20A chr15:77756582 3'AG 77756582 Downstream 88bp
chr15 77756669 77756669 1 + G A CESC 77756689 + 77756669 77756709 41 GTTGCTTCAGAGTGAGTCTTCAAATGCAGCAGAAGGCAATG ATTGCTTCAGAGTGAGTCTTCAAATGCAGCAGAAGGCAATG < 41bp 1 0.479362825202914 1 0.249027281999588 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HMG20A ENSG00000140382 CDS Human protein_coding chr15:77756689 chr15:77756669 synonymous SNV . 0 1 hm5C_associated_SNPs_18264 0 0 1 0 2 HMG20A chr15:77756729 5'GT 77756729 Upstream 61bp
chr3 182597360 182597360 1 + G A CESC 182597357 + 182597337 182597377 41 TATCTCTTGCACTCAGGGAGCATGAAAAACTATTTATGGAA TATCTCTTGCACTCAGGGAGCATAAAAAACTATTTATGGAA < 41bp 1 0.271765917158784 1 0.430989235639572 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP11B ENSG00000058063 CDS Human protein_coding chr3:182597357 chr3:182597360 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_18265 0 0 1 0 2 ATP11B chr3:182597284 3'AG 182597284 Downstream 77bp
chr3 182597360 182597360 1 + G A CESC 182597357 + 182597337 182597377 41 TATCTCTTGCACTCAGGGAGCATGAAAAACTATTTATGGAA TATCTCTTGCACTCAGGGAGCATAAAAAACTATTTATGGAA < 41bp 1 0.271765917158784 1 0.430989235639572 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP11B ENSG00000058063 CDS Human protein_coding chr3:182597357 chr3:182597360 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_18265 0 0 1 0 2 ATP11B chr3:182597437 5'GT 182597437 Upstream 78bp
chr1 31811835 31811835 1 + C G CESC 31811833 + 31811813 31811853 41 GATAGAATAAAAGTATCCCTCTCCATGAAGGTTGTCAATCA GATAGAATAAAAGTATCCCTCTGCATGAAGGTTGTCAATCA < 41bp 1 0.797837081498854 1 0.915084958076477 experiment 0.404325837002293 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZCCHC17 ENSG00000121766 CDS Human protein_coding chr1:31811833 chr1:31811835 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_18266 0 0 1 0 2 ZCCHC17 chr1:31811804 3'AG 31811804 Downstream 32bp
chr1 31811835 31811835 1 + C G CESC 31811833 + 31811813 31811853 41 GATAGAATAAAAGTATCCCTCTCCATGAAGGTTGTCAATCA GATAGAATAAAAGTATCCCTCTGCATGAAGGTTGTCAATCA < 41bp 1 0.797837081498854 1 0.915084958076477 experiment 0.404325837002293 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZCCHC17 ENSG00000121766 CDS Human protein_coding chr1:31811833 chr1:31811835 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_18266 0 0 1 0 2 ZCCHC17 chr1:31811895 5'GT 31811895 Upstream 61bp
chr1 976894 976894 1 + G T CESC 976875 + 976855 976895 41 CAGACCCCTGTCAGGGCGCCCTCCCTGACCCGAGCCGCAGC CAGACCCCTGTCAGGGCGCCCTCCCTGACCCGAGCCGCATC < 41bp 1 0.163763011600412 1 0.33487930893898 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:976875 chr1:976894 nonsynonymous SNV 0.026 0 40 hm5C_associated_SNPs_18270 0 0 1 0 1 AGRN chr1:976858 3'AG 976858 Downstream 37bp
chr7 103006572 103006572 1 + C T CESC 103006582 + 103006562 103006602 41 ACAAAAAAAGCCTGCCTTATCTTCTTTGATGAAATTGATGC ACAAAAAAAGTCTGCCTTATCTTCTTTGATGAAATTGATGC < 41bp 1 0.452770066691116 1 0.270779848098755 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMC2 ENSG00000161057 CDS Human protein_coding chr7:103006582 chr7:103006572 nonsynonymous SNV 1.000 5 11 hm5C_associated_SNPs_18271 0 0 0 0 2 PSMC2 chr7:103006523 3'AG 103006523 Downstream 50bp
chr7 103006572 103006572 1 + C T CESC 103006582 + 103006562 103006602 41 ACAAAAAAAGCCTGCCTTATCTTCTTTGATGAAATTGATGC ACAAAAAAAGTCTGCCTTATCTTCTTTGATGAAATTGATGC < 41bp 1 0.452770066691116 1 0.270779848098755 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMC2 ENSG00000161057 CDS Human protein_coding chr7:103006582 chr7:103006572 nonsynonymous SNV 1.000 5 11 hm5C_associated_SNPs_18271 0 0 0 0 2 PSMC2 chr7:103006610 5'GT 103006610 Upstream 39bp
chr19 42373233 42373233 1 + G T CESC 42373215 + 42373195 42373235 41 CAGCCACTTCAGCCGAGGCTCCAAGAGTGTGGCCCGCCGGG CAGCCACTTCAGCCGAGGCTCCAAGAGTGTGGCCCGCCTGG < 41bp 1 0.28901666550597 1 0.301229298114777 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373215 chr19:42373233 nonsynonymous SNV 0.971 2 39 hm5C_associated_SNPs_18273 0 0 1 0 1 RPS19 chr19:42373284 5'GT 42373284 Upstream 52bp
chr19 42373233 42373233 1 + G T CESC 42373228 + 42373208 42373248 41 CGAGGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCT CGAGGCTCCAAGAGTGTGGCCCGCCTGGTCCTCCAAGCCCT < 41bp 1 0.239882868066478 1 0.0407093167304993 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373228 chr19:42373233 nonsynonymous SNV 0.971 2 26 hm5C_associated_SNPs_18274 0 0 1 0 1 RPS19 chr19:42373284 5'GT 42373284 Upstream 52bp
chr19 42373233 42373233 1 + G T CESC 42373231 + 42373211 42373251 41 GGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCTGGA GGCTCCAAGAGTGTGGCCCGCCTGGTCCTCCAAGCCCTGGA < 41bp 1 0.276051477841292 1 0.0840632617473602 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373231 chr19:42373233 nonsynonymous SNV 0.971 2 23 hm5C_associated_SNPs_18275 0 0 1 0 1 RPS19 chr19:42373284 5'GT 42373284 Upstream 52bp
chr19 42373233 42373233 1 + G T CESC 42373232 + 42373212 42373252 41 GCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCTGGAG GCTCCAAGAGTGTGGCCCGCCTGGTCCTCCAAGCCCTGGAG < 41bp 1 0.725363935275115 1 0.266838729381561 experiment 0.549272129449771 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373232 chr19:42373233 nonsynonymous SNV 0.971 2 22 hm5C_associated_SNPs_18276 0 0 1 0 1 RPS19 chr19:42373284 5'GT 42373284 Upstream 52bp
chr19 42373233 42373233 1 + G T CESC 42373237 + 42373217 42373257 41 AAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCTGGAGGGGCT AAGAGTGTGGCCCGCCTGGTCCTCCAAGCCCTGGAGGGGCT < 41bp 1 0.0756367874786204 1 0.121882349252701 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373237 chr19:42373233 nonsynonymous SNV 0.971 2 17 hm5C_associated_SNPs_18277 0 0 1 0 1 RPS19 chr19:42373284 5'GT 42373284 Upstream 52bp
chr19 34818694 34818694 1 + G T CESC 34818689 + 34818669 34818709 41 TTTCCAGGCATATAAGATAGCTCTGGAAAGCTTAGGACACT TTTCCAGGCATATAAGATAGCTCTGTAAAGCTTAGGACACT < 41bp 1 0.175845601354364 1 0.252857714891434 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34818689 chr19:34818694 stopgain 1.000 1 26 hm5C_associated_SNPs_18279 0 0 1 0 2 KIAA0355 chr19:34818676 3'AG 34818676 Downstream 19bp
chr19 34818694 34818694 1 + G T CESC 34818689 + 34818669 34818709 41 TTTCCAGGCATATAAGATAGCTCTGGAAAGCTTAGGACACT TTTCCAGGCATATAAGATAGCTCTGTAAAGCTTAGGACACT < 41bp 1 0.175845601354364 1 0.252857714891434 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34818689 chr19:34818694 stopgain 1.000 1 26 hm5C_associated_SNPs_18279 0 0 1 0 2 KIAA0355 chr19:34818771 5'GT 34818771 Upstream 78bp
chr10 118314781 118314781 1 + G A CESC 118314776 + 118314756 118314796 41 CCAAATTTGTGGATGTAATTCACACGGATGGTGCCCCCATA CCAAATTTGTGGATGTAATTCACACAGATGGTGCCCCCATA < 41bp 1 0.553279326235651 1 0.0853571593761444 experiment 0.893441347528697 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314776 chr10:118314781 synonymous SNV . 0 26 hm5C_associated_SNPs_18280 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 29bp
chr10 118314781 118314781 1 + G A CESC 118314778 + 118314758 118314798 41 AAATTTGTGGATGTAATTCACACGGATGGTGCCCCCATAGT AAATTTGTGGATGTAATTCACACAGATGGTGCCCCCATAGT < 41bp 1 0.741005472000877 1 0.157412379980087 experiment 0.517989055998245 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314778 chr10:118314781 synonymous SNV . 0 24 hm5C_associated_SNPs_18281 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 29bp
chr10 118314781 118314781 1 + G A CESC 118314780 + 118314760 118314800 41 ATTTGTGGATGTAATTCACACGGATGGTGCCCCCATAGTCC ATTTGTGGATGTAATTCACACAGATGGTGCCCCCATAGTCC < 41bp 1 0.645479677703738 1 0.175532639026642 experiment 0.709040644592525 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314780 chr10:118314781 synonymous SNV . 0 22 hm5C_associated_SNPs_18282 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 29bp
chr10 118314781 118314781 1 + G A CESC 118314789 + 118314769 118314809 41 TGTAATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGG TGTAATTCACACAGATGGTGCCCCCATAGTCCCCAATTTGG < 41bp 1 0.105746862660539 1 0.0292183756828308 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314789 chr10:118314781 synonymous SNV . 0 13 hm5C_associated_SNPs_18283 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 29bp
chr10 118314781 118314781 1 + G A CESC 118314790 + 118314770 118314810 41 GTAATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGGG GTAATTCACACAGATGGTGCCCCCATAGTCCCCAATTTGGG < 41bp 1 0.438212296072651 1 0.0756638944149017 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314790 chr10:118314781 synonymous SNV . 0 12 hm5C_associated_SNPs_18284 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 29bp
chr10 118314781 118314781 1 + G A CESC 118314791 + 118314771 118314811 41 TAATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGGGT TAATTCACACAGATGGTGCCCCCATAGTCCCCAATTTGGGT < 41bp 1 0.0965436986708788 1 0.0642115771770477 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314791 chr10:118314781 synonymous SNV . 0 11 hm5C_associated_SNPs_18285 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 29bp
chr10 118314781 118314781 1 + G A CESC 118314792 + 118314772 118314812 41 AATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGGGTG AATTCACACAGATGGTGCCCCCATAGTCCCCAATTTGGGTG < 41bp 1 0.328672417456452 1 0.135274201631546 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314792 chr10:118314781 synonymous SNV . 0 10 hm5C_associated_SNPs_18286 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 29bp
chr10 118314781 118314781 1 + G A CESC 118314793 + 118314773 118314813 41 ATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGGGTGA ATTCACACAGATGGTGCCCCCATAGTCCCCAATTTGGGTGA < 41bp 1 0.478125717296949 1 0.301168113946915 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314793 chr10:118314781 synonymous SNV . 0 9 hm5C_associated_SNPs_18287 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 29bp
chr10 118314781 118314781 1 + G A CESC 118314799 + 118314779 118314819 41 ACGGATGGTGCCCCCATAGTCCCCAATTTGGGTGAGTTCCT ACAGATGGTGCCCCCATAGTCCCCAATTTGGGTGAGTTCCT < 41bp 1 0.718238470023654 1 0.204470217227936 experiment 0.563523059952692 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314799 chr10:118314781 synonymous SNV . 0 3 hm5C_associated_SNPs_18288 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 29bp
chr10 118314781 118314781 1 + G A CESC 118314800 + 118314780 118314820 41 CGGATGGTGCCCCCATAGTCCCCAATTTGGGTGAGTTCCTC CAGATGGTGCCCCCATAGTCCCCAATTTGGGTGAGTTCCTC < 41bp 1 0.537595018768133 1 0.0999529957771301 experiment 0.924809962463733 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314800 chr10:118314781 synonymous SNV . 0 2 hm5C_associated_SNPs_18289 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 29bp
chr10 118314781 118314781 1 + G A CESC 118314801 + 118314781 118314821 41 GGATGGTGCCCCCATAGTCCCCAATTTGGGTGAGTTCCTCA AGATGGTGCCCCCATAGTCCCCAATTTGGGTGAGTTCCTCA < 41bp 1 0.194380714888209 1 0.0393078029155731 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314801 chr10:118314781 synonymous SNV . 0 1 hm5C_associated_SNPs_18290 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 29bp
chr1 206902147 206902147 1 + C T CESC 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCCGCACATCGTACGGATCGTGGATGTGTATGAGAATCT < 41bp 1 0.500139250657468 1 0.118220925331116 experiment 0.999721498685064 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902147 synonymous SNV . 0 33 hm5C_associated_SNPs_18291 0 0 1 0 2 MAPKAPK2 chr1:206902055 3'AG 206902055 Downstream 93bp
chr1 206902147 206902147 1 + C T CESC 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCCGCACATCGTACGGATCGTGGATGTGTATGAGAATCT < 41bp 1 0.500139250657468 1 0.118220925331116 experiment 0.999721498685064 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902147 synonymous SNV . 0 33 hm5C_associated_SNPs_18291 0 0 1 0 2 MAPKAPK2 chr1:206902194 5'GT 206902194 Upstream 48bp
chr17 28772947 28772947 1 + C A CESC 28772959 + 28772939 28772979 41 ATCTGGCTCTGGCTCTTTATCGATACCATTCCTACAAAGAC ATCTGGCTATGGCTCTTTATCGATACCATTCCTACAAAGAC < 41bp 1 0.538365775000772 1 0.706809282302856 experiment 0.923268449998456 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPD ENSG00000108582 CDS Human protein_coding chr17:28772959 chr17:28772947 nonsynonymous SNV 0.984 1 9 hm5C_associated_SNPs_18292 0 0 1 0 1 CPD chr17:28773038 5'GT 28773038 Upstream 92bp
chr12 56536116 56536116 1 + C G CESC 56536133 + 56536113 56536153 41 CCTCTCAGAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACC CCTGTCAGAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACC < 41bp 1 0.245354448549805 1 0.0653214752674103 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56536133 chr12:56536116 synonymous SNV . 0 4 hm5C_associated_SNPs_18293 0 0 1 0 2 ESYT1 chr12:56536069 3'AG 56536069 Downstream 48bp
chr12 56536116 56536116 1 + C G CESC 56536133 + 56536113 56536153 41 CCTCTCAGAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACC CCTGTCAGAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACC < 41bp 1 0.245354448549805 1 0.0653214752674103 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56536133 chr12:56536116 synonymous SNV . 0 4 hm5C_associated_SNPs_18293 0 0 1 0 2 ESYT1 chr12:56536209 5'GT 56536209 Upstream 94bp
chr22 24237116 24237116 1 + G C CESC 24237096 + 24237076 24237116 41 TACAGCAAGCTGCTGTGCGGCCTGCTGGCCGAGCGCCTGCG TACAGCAAGCTGCTGTGCGGCCTGCTGGCCGAGCGCCTGCC < 41bp 1 0.137166559122762 1 0.0966968834400177 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237096 chr22:24237116 nonsynonymous SNV 0.992 0 41 hm5C_associated_SNPs_18294 0 0 1 0 1 MIF chr22:24237131 5'GT 24237131 Upstream 16bp
chr22 24237116 24237116 1 + G C CESC 24237109 + 24237089 24237129 41 TGTGCGGCCTGCTGGCCGAGCGCCTGCGCATCAGCCCGGAC TGTGCGGCCTGCTGGCCGAGCGCCTGCCCATCAGCCCGGAC < 41bp 1 0.580492687423361 1 0.114024579524994 experiment 0.839014625153277 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237109 chr22:24237116 nonsynonymous SNV 0.992 0 28 hm5C_associated_SNPs_18295 0 0 1 0 1 MIF chr22:24237131 5'GT 24237131 Upstream 16bp
chr22 24237116 24237116 1 + G C CESC 24237117 + 24237097 24237137 41 CTGCTGGCCGAGCGCCTGCGCATCAGCCCGGACAGGTACGC CTGCTGGCCGAGCGCCTGCCCATCAGCCCGGACAGGTACGC < 41bp 1 0.618279741944118 1 0.168879985809326 experiment 0.763440516111764 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237117 chr22:24237116 nonsynonymous SNV 0.992 0 20 hm5C_associated_SNPs_18296 0 0 1 0 1 MIF chr22:24237131 5'GT 24237131 Upstream 16bp
chr22 24237116 24237116 1 + G C CESC 24237120 + 24237100 24237140 41 CTGGCCGAGCGCCTGCGCATCAGCCCGGACAGGTACGCGGA CTGGCCGAGCGCCTGCCCATCAGCCCGGACAGGTACGCGGA < 41bp 1 0.597481249761867 1 0.587196052074432 experiment 0.805037500476266 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237120 chr22:24237116 nonsynonymous SNV 0.992 0 17 hm5C_associated_SNPs_18297 0 0 1 0 1 MIF chr22:24237131 5'GT 24237131 Upstream 16bp
chr2 175268854 175268854 1 + C G CESC 175268839 + 175268819 175268859 41 CTTTGAAAATAGAGGGAGTTCGTAATATTTCTAATCAACTT CTTTGAAAATAGAGGGAGTTCGTAATATTTCTAATGAACTT < 41bp 1 0.597700125400747 1 0.253552228212357 experiment 0.804599749198505 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SCRN3 ENSG00000144306 CDS Human protein_coding chr2:175268839 chr2:175268854 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_18299 0 0 1 0 1 SCRN3 chr2:175268831 3'AG 175268831 Downstream 24bp
chr14 72152249 72152249 1 + G A CESC 72152244 + 72152224 72152264 41 CAGGTGCAGAGTCCCATGACCTCGCGGCTGAATGCTGGAAA CAGGTGCAGAGTCCCATGACCTCGCAGCTGAATGCTGGAAA < 41bp 1 0.399597602434122 1 0.244484126567841 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72152244 chr14:72152249 nonsynonymous SNV 0.888 1 26 hm5C_associated_SNPs_18300 0 0 1 0 1 SIPA1L1 chr14:72152348 5'GT 72152348 Upstream 100bp
chr14 72152249 72152249 1 + G A CESC 72152246 + 72152226 72152266 41 GGTGCAGAGTCCCATGACCTCGCGGCTGAATGCTGGAAAAG GGTGCAGAGTCCCATGACCTCGCAGCTGAATGCTGGAAAAG < 41bp 1 0.633003427383631 1 0.392364203929901 experiment 0.733993145232739 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72152246 chr14:72152249 nonsynonymous SNV 0.888 1 24 hm5C_associated_SNPs_18301 0 0 1 0 1 SIPA1L1 chr14:72152348 5'GT 72152348 Upstream 100bp
chr6 31600766 31600766 1 + G A CESC 31600751 + 31600731 31600771 41 AGGCGACAAGAGGAGCTGGCCCTCTCCCAAGAACCGAAGGT AGGCGACAAGAGGAGCTGGCCCTCTCCCAAGAACCAAAGGT < 41bp 1 0.0944919442346538 1 0.108713060617447 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31600751 chr6:31600766 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_18302 0 0 1 0 1 PRRC2A chr6:31600769 5'GT 31600769 Upstream 4bp
chr6 31600766 31600766 1 + G A CESC 31600754 + 31600734 31600774 41 CGACAAGAGGAGCTGGCCCTCTCCCAAGAACCGAAGGTGGG CGACAAGAGGAGCTGGCCCTCTCCCAAGAACCAAAGGTGGG < 41bp 1 0.283144123225353 1 0.583602786064148 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31600754 chr6:31600766 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_18303 0 0 1 0 1 PRRC2A chr6:31600769 5'GT 31600769 Upstream 4bp
chr1 44684037 44684037 1 + G C CESC 44684019 + 44683999 44684039 41 TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGATGAT TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGATCAT < 41bp 1 0.599640164787394 1 0.313158273696899 experiment 0.800719670425212 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44684019 chr1:44684037 nonsynonymous SNV 0.963 1 39 hm5C_associated_SNPs_18305 0 0 1 0 2 DMAP1 chr1:44683983 3'AG 44683983 Downstream 55bp
chr1 44684037 44684037 1 + G C CESC 44684019 + 44683999 44684039 41 TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGATGAT TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGATCAT < 41bp 1 0.599640164787394 1 0.313158273696899 experiment 0.800719670425212 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44684019 chr1:44684037 nonsynonymous SNV 0.963 1 39 hm5C_associated_SNPs_18305 0 0 1 0 2 DMAP1 chr1:44684013 3'AG 44684013 Downstream 25bp
chr16 31131776 31131776 1 + G A CESC 31131787 + 31131767 31131807 41 GAGCAGCCTGAGCGCAAGATCACTCGCAACCAAAAGCGCAA GAGCAGCCTAAGCGCAAGATCACTCGCAACCAAAAGCGCAA < 41bp 1 0.230844493357083 1 0.0528246164321899 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KAT8 ENSG00000103510 CDS Human protein_coding chr16:31131787 chr16:31131776 nonsynonymous SNV 0.992 1 10 hm5C_associated_SNPs_18307 0 0 1 0 1 KAT8 chr16:31131835 5'GT 31131835 Upstream 60bp
chr6 32943932 32943932 1 + G A CESC 32943944 + 32943924 32943964 41 CAAGAAGGGGGCCAAGTTGGCAGGTAGGAAGAGTGGGAGTT CAAGAAGGAGGCCAAGTTGGCAGGTAGGAAGAGTGGGAGTT < 41bp 1 0.551038580563922 1 0.744854807853699 experiment 0.897922838872155 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32943944 chr6:32943932 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_18309 0 0 1 0 1 BRD2 chr6:32943946 5'GT 32943946 Upstream 15bp
chr17 27936291 27936291 1 + G C CESC 27936282 + 27936262 27936302 41 CAGCTTGACACCAAGAATATCTCCTTTGAGAGGTGGGTGGA CAGCTTGACACCAAGAATATCTCCTTTGACAGGTGGGTGGA < 41bp 1 0.395746105507528 1 0.713346898555756 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD13B ENSG00000198720 CDS Human protein_coding chr17:27936282 chr17:27936291 nonsynonymous SNV 0.999 4 30 hm5C_associated_SNPs_18310 0 0 0 0 1 ANKRD13B chr17:27936293 5'GT 27936293 Upstream 3bp
chr1 2087470 2087470 1 + G C CESC 2087488 + 2087468 2087508 41 TTGAGCAGGCATCCAGCAACCCCTTCCTGGTCGGATTACAC TTCAGCAGGCATCCAGCAACCCCTTCCTGGTCGGATTACAC < 41bp 1 0.0674006009686283 1 0.0408521890640259 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCZ ENSG00000067606 CDS Human protein_coding chr1:2087488 chr1:2087470 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_18311 0 0 1 1 2 PRKCZ chr1:2087434 3'AG 2087434 Downstream 37bp
chr1 2087470 2087470 1 + G C CESC 2087488 + 2087468 2087508 41 TTGAGCAGGCATCCAGCAACCCCTTCCTGGTCGGATTACAC TTCAGCAGGCATCCAGCAACCCCTTCCTGGTCGGATTACAC < 41bp 1 0.0674006009686283 1 0.0408521890640259 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCZ ENSG00000067606 CDS Human protein_coding chr1:2087488 chr1:2087470 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_18311 0 0 1 1 2 PRKCZ chr1:2087531 5'GT 2087531 Upstream 62bp
chr12 101674919 101674919 1 + G A CESC 101674915 + 101674895 101674935 41 TTCTTACATTTGCTGAACGACTGGGGAATGTTAATATTGAT TTCTTACATTTGCTGAACGACTGGAGAATGTTAATATTGAT < 41bp 1 0.467486919244029 1 0.275809526443481 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101674915 chr12:101674919 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_18312 0 0 1 0 2 UTP20 chr12:101674894 3'AG 101674894 Downstream 26bp
chr12 101674919 101674919 1 + G A CESC 101674915 + 101674895 101674935 41 TTCTTACATTTGCTGAACGACTGGGGAATGTTAATATTGAT TTCTTACATTTGCTGAACGACTGGAGAATGTTAATATTGAT < 41bp 1 0.467486919244029 1 0.275809526443481 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101674915 chr12:101674919 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_18312 0 0 1 0 2 UTP20 chr12:101674974 5'GT 101674974 Upstream 56bp
chrX 123229269 123229269 1 + C A CESC 123229250 + 123229230 123229270 41 AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTAT < 41bp 1 0.501187736339537 1 0.417167216539383 experiment 0.997624527320926 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123229250 chrX:123229269 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_18313 0 0 1 0 2 STAG2 chrX:123229222 3'AG 123229222 Downstream 48bp
chrX 123229269 123229269 1 + C A CESC 123229250 + 123229230 123229270 41 AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTAT < 41bp 1 0.501187736339537 1 0.417167216539383 experiment 0.997624527320926 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123229250 chrX:123229269 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_18313 0 0 1 0 2 STAG2 chrX:123229299 5'GT 123229299 Upstream 31bp
chr16 15788036 15788036 1 + A G CESC 15788047 + 15788027 15788067 41 GACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCG GACGACTCCGCCGGGGGGACCCCCCTCACACCTGCGGCCCG < 41bp 1 0.223323953042903 1 0.184419870376587 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDE1 ENSG00000072864 CDS Human protein_coding chr16:15788047 chr16:15788036 nonsynonymous SNV 0.261 0 10 hm5C_associated_SNPs_18314 0 0 1 0 2 NDE1 chr16:15788022 3'AG 15788022 Downstream 15bp
chr16 15788036 15788036 1 + A G CESC 15788047 + 15788027 15788067 41 GACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCG GACGACTCCGCCGGGGGGACCCCCCTCACACCTGCGGCCCG < 41bp 1 0.223323953042903 1 0.184419870376587 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDE1 ENSG00000072864 CDS Human protein_coding chr16:15788047 chr16:15788036 nonsynonymous SNV 0.261 0 10 hm5C_associated_SNPs_18314 0 0 1 0 2 NDE1 chr16:15788113 5'GT 15788113 Upstream 78bp
chr15 63481897 63481897 1 + T G CESC 63481916 + 63481896 63481936 41 CTGTTCCGCTTCTCAGAGGACGCCTTCAACACCACCTTCAT CGGTTCCGCTTCTCAGAGGACGCCTTCAACACCACCTTCAT < 41bp 1 0.604122244253191 1 0.0968928039073944 experiment 0.791755511493618 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RAB8B ENSG00000166128 CDS Human protein_coding chr15:63481916 chr15:63481897 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_18315 0 0 1 0 1 RAB8B chr15:63481947 5'GT 63481947 Upstream 51bp
chr10 93600322 93600322 1 + T G CESC 93600328 + 93600308 93600348 41 TGTCCTTCAGAAACTGTGTACTGTTCAGAGTGTCAACTGCA TGTCCTTCAGAAACGGTGTACTGTTCAGAGTGTCAACTGCA < 41bp 1 0.07928120678029 1 0.0365868508815765 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TNKS2 ENSG00000107854 CDS Human protein_coding chr10:93600328 chr10:93600322 nonsynonymous SNV 0.998 3 15 hm5C_associated_SNPs_18316 0 0 1 0 1 TNKS2 chr10:93600318 3'AG 93600318 Downstream 5bp
chrX 135106607 135106607 1 + T C CESC 135106613 + 135106593 135106633 41 TGGGTATTTGGTGGTGGCACCACTGCAATGCTGTCATGCTT TGGGTATTTGGTGGCGGCACCACTGCAATGCTGTCATGCTT < 41bp 1 0.318759801994072 1 0.562820911407471 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135106613 chrX:135106607 synonymous SNV . 0 15 hm5C_associated_SNPs_18317 0 0 1 0 1 SLC9A6 chrX:135106642 5'GT 135106642 Upstream 36bp
chr1 24022863 24022863 1 + A C CESC 24022845 + 24022825 24022865 41 CTCTTTCAGTATGATGGGATCATCCTTCCTGGCAAATAAAT CTCTTTCAGTATGATGGGATCATCCTTCCTGGCAAATACAT < 41bp 1 0.0962219066740706 1 0.0308486819267273 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022845 chr1:24022863 stoploss 1.000 0 39 hm5C_associated_SNPs_18318 0 0 1 0 1 RPL11 chr1:24022834 3'AG 24022834 Downstream 30bp
chr1 24022863 24022863 1 + A C CESC 24022848 + 24022828 24022868 41 TTTCAGTATGATGGGATCATCCTTCCTGGCAAATAAATTCC TTTCAGTATGATGGGATCATCCTTCCTGGCAAATACATTCC < 41bp 1 0.0400447323837332 1 0.0410789847373962 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022848 chr1:24022863 stoploss 1.000 0 36 hm5C_associated_SNPs_18319 0 0 1 0 1 RPL11 chr1:24022834 3'AG 24022834 Downstream 30bp
chr18 48446854 48446854 1 + G A CESC 48446838 + 48446818 48446858 41 GTTTTTAGATATGGCCGGAACACACTCATTCAGTTCGAAGA GTTTTTAGATATGGCCGGAACACACTCATTCAGTTCAAAGA < 41bp 1 0.238926287697375 1 0.155387878417969 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ME2 ENSG00000082212 CDS Human protein_coding chr18:48446838 chr18:48446854 nonsynonymous SNV 0.983 4 37 hm5C_associated_SNPs_18321 0 0 1 0 2 ME2 chr18:48446826 3'AG 48446826 Downstream 29bp
chr18 48446854 48446854 1 + G A CESC 48446838 + 48446818 48446858 41 GTTTTTAGATATGGCCGGAACACACTCATTCAGTTCGAAGA GTTTTTAGATATGGCCGGAACACACTCATTCAGTTCAAAGA < 41bp 1 0.238926287697375 1 0.155387878417969 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ME2 ENSG00000082212 CDS Human protein_coding chr18:48446838 chr18:48446854 nonsynonymous SNV 0.983 4 37 hm5C_associated_SNPs_18321 0 0 1 0 2 ME2 chr18:48446935 5'GT 48446935 Upstream 82bp
chr6 144724303 144724303 1 + A C CESC 144724309 + 144724289 144724329 41 TTACCAAATGGATAAATGCTCGATTTTCAAAGGTAACTGAG TTACCAAATGGATACATGCTCGATTTTCAAAGGTAACTGAG < 41bp 1 0.0760383588658595 1 0.129245847463608 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144724309 chr6:144724303 nonsynonymous SNV 0.985 5 15 hm5C_associated_SNPs_18322 0 0 1 0 2 UTRN chr6:144724259 3'AG 144724259 Downstream 45bp
chr6 144724303 144724303 1 + A C CESC 144724309 + 144724289 144724329 41 TTACCAAATGGATAAATGCTCGATTTTCAAAGGTAACTGAG TTACCAAATGGATACATGCTCGATTTTCAAAGGTAACTGAG < 41bp 1 0.0760383588658595 1 0.129245847463608 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144724309 chr6:144724303 nonsynonymous SNV 0.985 5 15 hm5C_associated_SNPs_18322 0 0 1 0 2 UTRN chr6:144724320 5'GT 144724320 Upstream 18bp
chr9 128678194 128678194 1 + G T CESC 128678180 + 128678160 128678200 41 CCCAGATCAGACAAATCTATCACACAGAACTGGAGAAATAT CCCAGATCAGACAAATCTATCACACAGAACTGGATAAATAT < 41bp 1 0.223269929612656 1 0.0834093391895294 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PBX3 ENSG00000167081 CDS Human protein_coding chr9:128678180 chr9:128678194 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_18323 0 0 1 0 1 PBX3 chr9:128678206 5'GT 128678206 Upstream 13bp
chr2 201485959 201485959 1 + C T CESC 201485944 + 201485924 201485964 41 CTTCTGCTTTTTTACTGAAGCTGAGAAATTTCTGGCGACAG CTTCTGCTTTTTTACTGAAGCTGAGAAATTTCTGGTGACAG < 41bp 1 0.386024522730069 1 0.123120605945587 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AOX1 ENSG00000138356 CDS Human protein_coding chr2:201485944 chr2:201485959 nonsynonymous SNV 0.103 0 36 hm5C_associated_SNPs_18329 0 0 0 0 1 AOX1 chr2:201485969 5'GT 201485969 Upstream 11bp
chr2 231326077 231326077 1 + T G CESC 231326090 + 231326070 231326110 41 CAAAAGTTGAGTGCCAAGCCCAAGCAAGAACTCATCATAAC CAAAAGTGGAGTGCCAAGCCCAAGCAAGAACTCATCATAAC < 41bp 1 0.349523867470133 1 0.554726123809814 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SP100 ENSG00000067066 CDS Human protein_coding chr2:231326090 chr2:231326077 synonymous SNV . 0 8 hm5C_associated_SNPs_18330 0 0 0 0 1 SP100 chr2:231326129 5'GT 231326129 Upstream 53bp
chr9 140622861 140622861 1 + G T CESC 140622869 + 140622849 140622889 41 AAGGAACCAAAAGAGGAGATCAACAAAAACATTTCTGACTT AAGGAACCAAAATAGGAGATCAACAAAAACATTTCTGACTT < 41bp 1 0.42255400519009 1 0.3763707280159 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EHMT1 ENSG00000181090 CDS Human protein_coding chr9:140622869 chr9:140622861 stopgain 0.965 0 13 hm5C_associated_SNPs_18331 0 0 1 0 1 EHMT1 chr9:140622801 3'AG 140622801 Downstream 61bp
chr1 33147407 33147407 1 - G A CESC 33147402 - 33147382 33147422 41 AACAGCAAAAAACTTCTTAGCAAAGGATCACTAAGTACCCT AACAGCAAAAAACTTTTTAGCAAAGGATCACTAAGTACCCT < 41bp 1 0.572663485032526 1 0.73883193731308 experiment 0.854673029934948 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNC ENSG00000162520 CDS Human protein_coding chr1:33147402 chr1:33147407 synonymous SNV . 0 16 hm5C_associated_SNPs_18334 0 0 0 0 1 SYNC chr1:33147461 3'AG 33147461 Downstream 55bp
chr1 117626692 117626692 1 + G A CESC 117626677 + 117626657 117626697 41 TCCCATGGAACACTAATCATCTGTCCTGCCTCCCTGATCCA TCCCATGGAACACTAATCATCTGTCCTGCCTCCCTAATCCA < 41bp 1 0.134167368926448 1 0.088619738817215 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117626677 chr1:117626692 synonymous SNV . 0 36 hm5C_associated_SNPs_18335 0 0 1 0 1 TTF2 chr1:117626640 3'AG 117626640 Downstream 53bp
chr4 56230311 56230311 1 + C T CESC 56230318 + 56230298 56230338 41 TACGAAGACTCTTCGAGTGCCTCTACGTCAGTGTCTTCTCC TACGAAGACTCTTTGAGTGCCTCTACGTCAGTGTCTTCTCC < 41bp 1 0.505357396652724 1 0.186865955591202 experiment 0.989285206694553 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control SRD5A3 ENSG00000128039 CDS Human protein_coding chr4:56230318 chr4:56230311 synonymous SNV . 0 14 hm5C_associated_SNPs_18336 0 0 1 0 1 SRD5A3 chr4:56230241 3'AG 56230241 Downstream 71bp
chr7 101837145 101837145 1 + C T CESC 101837147 + 101837127 101837167 41 TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA TGAAGTCCATGGAGTTTGTACCGTCCGAGGGCGCTGGGACA < 41bp 1 0.0181393483226693 1 0.114587038755417 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837147 chr7:101837145 nonsynonymous SNV 0.953 1 19 hm5C_associated_SNPs_18337 0 0 1 0 2 CUX1 chr7:101837122 3'AG 101837122 Downstream 24bp
chr7 101837145 101837145 1 + C T CESC 101837147 + 101837127 101837167 41 TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA TGAAGTCCATGGAGTTTGTACCGTCCGAGGGCGCTGGGACA < 41bp 1 0.0181393483226693 1 0.114587038755417 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837147 chr7:101837145 nonsynonymous SNV 0.953 1 19 hm5C_associated_SNPs_18337 0 0 1 0 2 CUX1 chr7:101837170 5'GT 101837170 Upstream 26bp
chr7 101837145 101837145 1 + C T CESC 101837148 + 101837128 101837168 41 GAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC GAAGTCCATGGAGTTTGTACCGTCCGAGGGCGCTGGGACAC < 41bp 1 0.121901218857896 1 0.444534957408905 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837148 chr7:101837145 nonsynonymous SNV 0.953 1 18 hm5C_associated_SNPs_18338 0 0 1 0 2 CUX1 chr7:101837122 3'AG 101837122 Downstream 24bp
chr7 101837145 101837145 1 + C T CESC 101837148 + 101837128 101837168 41 GAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC GAAGTCCATGGAGTTTGTACCGTCCGAGGGCGCTGGGACAC < 41bp 1 0.121901218857896 1 0.444534957408905 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837148 chr7:101837145 nonsynonymous SNV 0.953 1 18 hm5C_associated_SNPs_18338 0 0 1 0 2 CUX1 chr7:101837170 5'GT 101837170 Upstream 26bp
chr12 31244671 31244671 1 + C T CESC 31244687 + 31244667 31244707 41 CTATCAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGG CTATTAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGG < 41bp 1 0.563646283246925 1 0.419142127037048 experiment 0.872707433506149 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244687 chr12:31244671 stopgain 0.987 1 5 hm5C_associated_SNPs_18339 0 0 1 0 1 DDX11 chr12:31244653 3'AG 31244653 Downstream 19bp
chr12 31244671 31244671 1 + C T CESC 31244691 + 31244671 31244711 41 CAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGGGCAT TAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGGGCAT < 41bp 1 0.240247380595064 1 0.0578725934028625 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244691 chr12:31244671 stopgain 0.987 1 1 hm5C_associated_SNPs_18340 0 0 1 0 1 DDX11 chr12:31244653 3'AG 31244653 Downstream 19bp
chr18 29171890 29171890 1 + C G CESC 29171892 + 29171872 29171912 41 TCTCATCGTCTGCTCCTCCTCTGCCTTGCTGGACTGGTATT TCTCATCGTCTGCTCCTCGTCTGCCTTGCTGGACTGGTATT < 41bp 1 0.458196166286543 1 0.174120217561722 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTR ENSG00000118271 CDS Human protein_coding chr18:29171892 chr18:29171890 nonsynonymous SNV 0.416 1 19 hm5C_associated_SNPs_18341 0 0 1 0 1 TTR chr18:29171934 5'GT 29171934 Upstream 45bp
chr1 145115802 145115802 1 + G C CESC 145115809 + 145115789 145115829 41 ATGCGAAGTACTTGAACATGCATTCCACTTATGCCAAACTT ATGCGAAGTACTTCAACATGCATTCCACTTATGCCAAACTT < 41bp 1 0.0428196526562986 1 0.0602039992809296 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC22B ENSG00000223380 ncRNA_exonic Human other chr1:145115809 chr1:145115802 . . 0 14 hm5C_associated_SNPs_18342 0 0 1 0 1 SEC22B chr1:145115735 3'AG 145115735 Downstream 68bp
chr17 35346666 35346666 1 + G C CESC 35346663 + 35346643 35346683 41 TCTATCGAGTTCTTGGCAAACCTGAGCCAGCAGCTCAGCCT TCTATCGAGTTCTTGGCAAACCTCAGCCAGCAGCTCAGCCT < 41bp 1 0.464274922771437 1 0.0423479974269867 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AATF ENSG00000108270 CDS Human other chr17:35346663 chr17:35346666 nonsynonymous SNV 0.919 1 24 hm5C_associated_SNPs_18343 0 0 0 1 1 AATF chr17:35346710 5'GT 35346710 Upstream 45bp
chr19 58906057 58906057 1 + G A CESC 58906069 + 58906049 58906089 41 GGCTCCTCGAACTCCTATGCCATTAAGAAGAAGGACGAGCT GGCTCCTCAAACTCCTATGCCATTAAGAAGAAGGACGAGCT < 41bp 1 0.176598331355957 1 0.0561041235923767 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906069 chr19:58906057 synonymous SNV . 0 9 hm5C_associated_SNPs_18344 0 0 1 0 1 RPS5 chr19:58906049 3'AG 58906049 Downstream 9bp
chr17 35346678 35346678 1 + C T CESC 35346663 + 35346643 35346683 41 TCTATCGAGTTCTTGGCAAACCTGAGCCAGCAGCTCAGCCT TCTATCGAGTTCTTGGCAAACCTGAGCCAGCAGCTTAGCCT < 41bp 1 0.559759148343467 1 0.0396811068058014 experiment 0.880481703313066 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AATF ENSG00000108270 CDS Human other chr17:35346663 chr17:35346678 stopgain 0.030 0 36 hm5C_associated_SNPs_18345 0 0 0 2 1 AATF chr17:35346710 5'GT 35346710 Upstream 33bp
chr11 606580 606580 1 + C G CESC 606594 + 606574 606614 41 CTCCCTCAGCGCCAAGAGGGCGGGTGAGTGCCTTCCCTGCC CTCCCTGAGCGCCAAGAGGGCGGGTGAGTGCCTTCCCTGCC < 41bp 1 0.782947411308687 1 0.848118901252747 experiment 0.434105177382627 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:606594 chr11:606580 synonymous SNV . 0 7 hm5C_associated_SNPs_18346 0 0 1 0 1 PHRF1 chr11:606596 5'GT 606596 Upstream 17bp
chr3 9784724 9784724 1 + G A CESC 9784735 + 9784715 9784755 41 GATGATTTTGAGGAGGACTTCAACCTCATCGTCAGCAACTG GATGATTTTAAGGAGGACTTCAACCTCATCGTCAGCAACTG < 41bp 1 0.240169480676645 1 0.230959862470627 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9784735 chr3:9784724 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_18347 0 0 1 0 1 BRPF1 chr3:9784628 3'AG 9784628 Downstream 97bp
chr11 68125245 68125245 1 + G T CESC 68125248 + 68125228 68125268 41 TGACCATCGACCTGGAGGAGCAGAAGCTCTACTGGGCTGAC TGACCATCGACCTGGAGTAGCAGAAGCTCTACTGGGCTGAC < 41bp 1 0.570289056171664 1 0.727347493171692 experiment 0.859421887656672 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68125248 chr11:68125245 stopgain 0.999 0 18 hm5C_associated_SNPs_18348 0 0 1 0 1 LRP5 chr11:68125315 5'GT 68125315 Upstream 71bp
chr8 124146362 124146362 1 + G C CESC 124146369 + 124146349 124146389 41 CATAGGTATATATGAGAGATCGAGAAATTGCTGCCACAGCC CATAGGTATATATCAGAGATCGAGAAATTGCTGCCACAGCC < 41bp 1 0.785787377325737 1 0.712713360786438 experiment 0.428425245348526 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124146369 chr8:124146362 nonsynonymous SNV 0.927 0 14 hm5C_associated_SNPs_18349 0 0 1 0 2 TBC1D31 chr8:124146354 3'AG 124146354 Downstream 9bp
chr8 124146362 124146362 1 + G C CESC 124146369 + 124146349 124146389 41 CATAGGTATATATGAGAGATCGAGAAATTGCTGCCACAGCC CATAGGTATATATCAGAGATCGAGAAATTGCTGCCACAGCC < 41bp 1 0.785787377325737 1 0.712713360786438 experiment 0.428425245348526 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124146369 chr8:124146362 nonsynonymous SNV 0.927 0 14 hm5C_associated_SNPs_18349 0 0 1 0 2 TBC1D31 chr8:124146446 5'GT 124146446 Upstream 85bp
chr19 18254649 18254649 1 + C G CESC 18254659 + 18254639 18254679 41 CAGCCCATCTCTCCTGAATACCATCAGCCTGGACACAATGC CAGCCCATCTGTCCTGAATACCATCAGCCTGGACACAATGC < 41bp 1 0.0159584640444964 1 0.0138346552848816 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18254659 chr19:18254649 nonsynonymous SNV 0.038 0 11 hm5C_associated_SNPs_18350 0 0 1 0 1 MAST3 chr19:18254573 3'AG 18254573 Downstream 77bp
chr3 48501272 48501272 1 + G A CESC 48501254 + 48501234 48501274 41 CATCCCTAAGCCTTTGCCACCTCCTGAGTAGTAGTTCTGAG CATCCCTAAGCCTTTGCCACCTCCTGAGTAGTAGTTCTAAG < 41bp 1 0.20755780131565 1 0.20822149515152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48501254 chr3:48501272 nonsynonymous SNV 0.989 3 39 hm5C_associated_SNPs_18351 0 0 1 0 1 ATRIP chr3:48501315 5'GT 48501315 Upstream 44bp
chr17 41154798 41154798 1 + G C CESC 41154779 + 41154759 41154799 41 ACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAAGAGA ACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAAGACA < 41bp 1 0.4966246743986 1 0.40775939822197 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL27 ENSG00000131469 CDS Human protein_coding chr17:41154779 chr17:41154798 nonsynonymous SNV 0.985 1 40 hm5C_associated_SNPs_18355 0 0 1 0 1 RPL27 chr17:41154800 5'GT 41154800 Upstream 3bp
chr7 45662258 45662258 1 + C G CESC 45662274 + 45662254 45662294 41 GTTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG GTTTGACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG < 41bp 1 0.468490072765682 1 0.545621931552887 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45662274 chr7:45662258 nonsynonymous SNV 0.997 5 5 hm5C_associated_SNPs_18356 0 0 1 0 2 ADCY1 chr7:45662231 3'AG 45662231 Downstream 28bp
chr7 45662258 45662258 1 + C G CESC 45662274 + 45662254 45662294 41 GTTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG GTTTGACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG < 41bp 1 0.468490072765682 1 0.545621931552887 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45662274 chr7:45662258 nonsynonymous SNV 0.997 5 5 hm5C_associated_SNPs_18356 0 0 1 0 2 ADCY1 chr7:45662342 5'GT 45662342 Upstream 85bp
chr19 49100097 49100097 1 + G A CESC 49100079 + 49100059 49100099 41 CTGGGCTCCGTCGTGGCACACTCAACCTTCAGCGCCATGAA CTGGGCTCCGTCGTGGCACACTCAACCTTCAGCGCCATAAA < 41bp 1 0.744728846299743 1 0.228879421949387 experiment 0.510542307400514 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49100079 chr19:49100097 nonsynonymous SNV 0.972 4 39 hm5C_associated_SNPs_18357 0 0 0 0 1 SULT2B1 chr19:49100176 5'GT 49100176 Upstream 80bp
chr16 89603184 89603184 1 + G A CESC 89603199 + 89603179 89603219 41 CTCTTGACCAGCTACCCTCCCAGGGGACCATGAGGAAGCTC CTCTTAACCAGCTACCCTCCCAGGGGACCATGAGGAAGCTC < 41bp 1 0.710432999834381 1 0.743716597557068 experiment 0.579134000331237 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPG7 ENSG00000197912 CDS Human protein_coding chr16:89603199 chr16:89603184 nonsynonymous SNV 0.031 1 6 hm5C_associated_SNPs_18359 0 0 1 0 1 SPG7 chr16:89603173 3'AG 89603173 Downstream 12bp
chr3 184040704 184040704 1 + G A CESC 184040721 + 184040701 184040741 41 CCAGAGGGATTGCCACATATCAGTGACGTGGTGCTGGACAA CCAAAGGGATTGCCACATATCAGTGACGTGGTGCTGGACAA < 41bp 1 0.648864143941502 1 0.338058412075043 experiment 0.702271712116997 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184040721 chr3:184040704 nonsynonymous SNV 0.979 3 4 hm5C_associated_SNPs_18360 0 0 1 0 2 EIF4G1 chr3:184040609 3'AG 184040609 Downstream 96bp
chr3 184040704 184040704 1 + G A CESC 184040721 + 184040701 184040741 41 CCAGAGGGATTGCCACATATCAGTGACGTGGTGCTGGACAA CCAAAGGGATTGCCACATATCAGTGACGTGGTGCTGGACAA < 41bp 1 0.648864143941502 1 0.338058412075043 experiment 0.702271712116997 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184040721 chr3:184040704 nonsynonymous SNV 0.979 3 4 hm5C_associated_SNPs_18360 0 0 1 0 2 EIF4G1 chr3:184040742 5'GT 184040742 Upstream 39bp
chr1 145584227 145584227 1 + G A CESC 145584230 + 145584210 145584250 41 GCTCATCAGATGAGGAGGATCTGCCCCCTACCAAGAAGCAC GCTCATCAGATGAGGAGAATCTGCCCCCTACCAAGAAGCAC < 41bp 1 0.226000356860881 1 0.419209510087967 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIAS3 ENSG00000131788 CDS Human protein_coding chr1:145584230 chr1:145584227 nonsynonymous SNV . 0 18 hm5C_associated_SNPs_18361 0 0 0 0 1 PIAS3 chr1:145584129 3'AG 145584129 Downstream 99bp
chr9 5770130 5770130 1 + G A CESC 5770122 + 5770102 5770142 41 TAAAGTCTCAATCAGCTGACCCATTTTTGAACCTTGAGATG TAAAGTCTCAATCAGCTGACCCATTTTTAAACCTTGAGATG < 41bp 1 0.0364315046941508 1 0.0894494950771332 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RIC1 ENSG00000107036 CDS Human protein_coding chr9:5770122 chr9:5770130 synonymous SNV . 0 29 hm5C_associated_SNPs_18363 0 0 1 0 1 RIC1 chr9:5770087 3'AG 5770087 Downstream 44bp
chr9 5770130 5770130 1 + G A CESC 5770123 + 5770103 5770143 41 AAAGTCTCAATCAGCTGACCCATTTTTGAACCTTGAGATGG AAAGTCTCAATCAGCTGACCCATTTTTAAACCTTGAGATGG < 41bp 1 0.0486202270682644 1 0.0460381805896759 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RIC1 ENSG00000107036 CDS Human protein_coding chr9:5770123 chr9:5770130 synonymous SNV . 0 28 hm5C_associated_SNPs_18364 0 0 1 0 1 RIC1 chr9:5770087 3'AG 5770087 Downstream 44bp
chr16 50100092 50100092 1 + C T CESC 50100099 + 50100079 50100119 41 CAGTTCTCCCCTACGGGCGACTGTCAGGCCGAGGCGGCTGC CAGTTCTCCCCTATGGGCGACTGTCAGGCCGAGGCGGCTGC < 41bp 1 0.130648719841805 1 0.0910870134830475 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HEATR3 ENSG00000155393 CDS Human protein_coding chr16:50100099 chr16:50100092 nonsynonymous SNV 0.830 1 14 hm5C_associated_SNPs_18365 0 0 1 0 1 HEATR3 chr16:50100180 5'GT 50100180 Upstream 89bp
chr17 29560168 29560168 1 + G A CESC 29560175 + 29560155 29560195 41 TGGTCACAATGATGGGTGATCAAGGAGAACTCCCTATAGCG TGGTCACAATGATAGGTGATCAAGGAGAACTCCCTATAGCG < 41bp 1 0.422526339685826 1 0.720620930194855 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29560175 chr17:29560168 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_18366 0 0 1 0 1 NF1 chr17:29560231 5'GT 29560231 Upstream 64bp
chr20 47895230 47895230 1 + G C CESC 47895210 + 47895190 47895230 41 GCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG GCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGC < 41bp 1 0.0683908598591912 1 0.078784167766571 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZFAS1 ENSG00000177410 ncRNA_exonic Human antisense chr20:47895210 chr20:47895230 . . 0 41 hm5C_associated_SNPs_18367 0 0 1 0 2 ZFAS1 chr20:47895253 5'GT 47895253 Upstream 24bp
chr20 47895230 47895230 1 + G C CESC 47895210 + 47895190 47895230 41 GCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG GCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGC < 41bp 1 0.0683908598591912 1 0.078784167766571 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZFAS1 ENSG00000177410 ncRNA_exonic Human antisense chr20:47895210 chr20:47895230 . . 0 41 hm5C_associated_SNPs_18367 0 0 1 0 2 ZFAS1 chr20:47895275 5'GT 47895275 Upstream 46bp
chr11 5624570 5624570 1 + C T CESC 5624588 + 5624568 5624608 41 TACGAGAAGAGGTGACCTGCCCTATCTGCCTGGAGCTCCTA TATGAGAAGAGGTGACCTGCCCTATCTGCCTGGAGCTCCTA < 41bp 1 0.133470277189681 1 0.0744525492191315 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM6;TRIM6-TRIM34 ENSG00000121236;ENSG00000258588 CDS Human other chr11:5624588 chr11:5624570 stopgain 0.851 0 3 hm5C_associated_SNPs_18368 0 0 0 0 1 TRIM6;TRIM6-TRIM34 chr11:5624476 3'AG 5624476 Downstream 95bp
chr22 21288098 21288098 1 + G T CESC 21288090 + 21288070 21288110 41 TCCAAGCCCACCAATGGGATCTGTCTCAGCACCCAACCTGC TCCAAGCCCACCAATGGGATCTGTCTCATCACCCAACCTGC < 41bp 1 0.0894185746841775 1 0.124532461166382 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRKL ENSG00000099942 CDS Human protein_coding chr22:21288090 chr22:21288098 nonsynonymous SNV 0.999 0 29 hm5C_associated_SNPs_18369 0 0 1 0 1 CRKL chr22:21288067 3'AG 21288067 Downstream 32bp
chr22 21288098 21288098 1 + G T CESC 21288099 + 21288079 21288119 41 ACCAATGGGATCTGTCTCAGCACCCAACCTGCCTACAGCAG ACCAATGGGATCTGTCTCATCACCCAACCTGCCTACAGCAG < 41bp 1 0.432860255264113 1 0.347251534461975 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CRKL ENSG00000099942 CDS Human protein_coding chr22:21288099 chr22:21288098 nonsynonymous SNV 0.999 0 20 hm5C_associated_SNPs_18370 0 0 1 0 1 CRKL chr22:21288067 3'AG 21288067 Downstream 32bp
chr2 242431061 242431061 1 + C T CESC 242431077 + 242431057 242431097 41 CCAGCGTGTCCAGGGCAGACCACAGTGCAGCTGTCGAGGTA CCAGTGTGTCCAGGGCAGACCACAGTGCAGCTGTCGAGGTA < 41bp 1 0.603553076519294 1 0.238635629415512 experiment 0.792893846961412 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FARP2 ENSG00000006607 CDS Human protein_coding chr2:242431077 chr2:242431061 synonymous SNV . 0 5 hm5C_associated_SNPs_18372 0 0 0 0 1 FARP2 chr2:242431094 5'GT 242431094 Upstream 34bp
chr6 32134501 32134501 1 + G A CESC 32134481 + 32134461 32134501 41 CGGGCGCTGTGTTCCAGGACCATGTACCGCGTTATGTGGCG CGGGCGCTGTGTTCCAGGACCATGTACCGCGTTATGTGGCA < 41bp 1 0.175395129475891 1 0.145566076040268 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134481 chr6:32134501 nonsynonymous SNV 0.977 3 41 hm5C_associated_SNPs_18373 0 0 1 0 2 EGFL8 chr6:32134478 3'AG 32134478 Downstream 24bp
chr6 32134501 32134501 1 + G A CESC 32134481 + 32134461 32134501 41 CGGGCGCTGTGTTCCAGGACCATGTACCGCGTTATGTGGCG CGGGCGCTGTGTTCCAGGACCATGTACCGCGTTATGTGGCA < 41bp 1 0.175395129475891 1 0.145566076040268 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134481 chr6:32134501 nonsynonymous SNV 0.977 3 41 hm5C_associated_SNPs_18373 0 0 1 0 2 EGFL8 chr6:32134587 5'GT 32134587 Upstream 87bp
chr3 186503991 186503991 1 + G T CESC 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCATATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT < 41bp 1 0.126999622749416 1 0.107707589864731 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186503991 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_18374 0 0 1 1 2 EIF4A2 chr3:186503953 3'AG 186503953 Downstream 39bp
chr3 186503991 186503991 1 + G T CESC 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCATATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT < 41bp 1 0.126999622749416 1 0.107707589864731 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186503991 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_18374 0 0 1 1 2 EIF4A2 chr3:186504062 5'GT 186504062 Upstream 72bp
chr6 43188289 43188289 1 + C T CESC 43188295 + 43188275 43188315 41 CCCGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC CCCGCCCAGCCCACTGGAGCCTTCATTCGTGCCATCGTCTC < 41bp 1 0.506950627552672 1 0.454248875379562 experiment 0.986098744894657 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188295 chr6:43188289 synonymous SNV . 0 15 hm5C_associated_SNPs_18375 0 0 0 0 2 CUL9 chr6:43188197 3'AG 43188197 Downstream 93bp
chr6 43188289 43188289 1 + C T CESC 43188295 + 43188275 43188315 41 CCCGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC CCCGCCCAGCCCACTGGAGCCTTCATTCGTGCCATCGTCTC < 41bp 1 0.506950627552672 1 0.454248875379562 experiment 0.986098744894657 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188295 chr6:43188289 synonymous SNV . 0 15 hm5C_associated_SNPs_18375 0 0 0 0 2 CUL9 chr6:43188337 5'GT 43188337 Upstream 49bp
chr5 74069855 74069855 1 + C A CESC 74069862 + 74069842 74069882 41 GAGCGAATTGGGCCTTGTGACACAAGGAGGCAAAGTTATTT GAGCGAATTGGGCATTGTGACACAAGGAGGCAAAGTTATTT < 41bp 1 0.753328104395987 1 0.205172091722488 experiment 0.493343791208026 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NSA2 ENSG00000164346 CDS Human protein_coding chr5:74069862 chr5:74069855 nonsynonymous SNV 0.997 1 14 hm5C_associated_SNPs_18376 0 0 1 0 1 NSA2 chr5:74069885 5'GT 74069885 Upstream 31bp
chr4 103500180 103500180 1 + C T CESC 103500160 + 103500140 103500180 41 CTGGCAGCTTCACAAGGCGCCTGGAACCCGTGGTATCAGAC CTGGCAGCTTCACAAGGCGCCTGGAACCCGTGGTATCAGAT < 41bp 1 0.575309365599053 1 0.417110562324524 experiment 0.849381268801893 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103500160 chr4:103500180 synonymous SNV . 0 41 hm5C_associated_SNPs_18377 0 0 0 0 1 NFKB1 chr4:103500196 5'GT 103500196 Upstream 17bp
chr1 109350120 109350120 1 + C T CESC 109350104 + 109350084 109350124 41 GTTTTTGTAATTGGAGGGATCACATACTCTGAAGTGCGTTG GTTTTTGTAATTGGAGGGATCACATACTCTGAAGTGTGTTG < 41bp 1 0.419538296848243 1 0.104000210762024 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109350104 chr1:109350120 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_18378 0 0 1 0 2 STXBP3 chr1:109350023 3'AG 109350023 Downstream 98bp
chr1 109350120 109350120 1 + C T CESC 109350104 + 109350084 109350124 41 GTTTTTGTAATTGGAGGGATCACATACTCTGAAGTGCGTTG GTTTTTGTAATTGGAGGGATCACATACTCTGAAGTGTGTTG < 41bp 1 0.419538296848243 1 0.104000210762024 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109350104 chr1:109350120 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_18378 0 0 1 0 2 STXBP3 chr1:109350171 5'GT 109350171 Upstream 52bp
chr19 59059435 59059435 1 + G A CESC 59059447 + 59059427 59059467 41 CCTGGAGCGGCAGCACTGGACCATGACCAAGATCCAGAAGC CCTGGAGCAGCAGCACTGGACCATGACCAAGATCCAGAAGC < 41bp 1 0.158315637994978 1 0.0413950681686401 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59059447 chr19:59059435 nonsynonymous SNV 0.992 1 9 hm5C_associated_SNPs_18380 0 0 1 0 1 TRIM28 chr19:59059401 3'AG 59059401 Downstream 35bp
chr19 59059435 59059435 1 + G A CESC 59059448 + 59059428 59059468 41 CTGGAGCGGCAGCACTGGACCATGACCAAGATCCAGAAGCA CTGGAGCAGCAGCACTGGACCATGACCAAGATCCAGAAGCA < 41bp 1 0.587944566698511 1 0.21021381020546 experiment 0.824110866602977 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59059448 chr19:59059435 nonsynonymous SNV 0.992 1 8 hm5C_associated_SNPs_18381 0 0 1 0 1 TRIM28 chr19:59059401 3'AG 59059401 Downstream 35bp
chr8 21957333 21957333 1 + G A CESC 21957337 + 21957317 21957357 41 CACAGACCGGCAGCCTGAAGCCCCCGGGGACAACCCCCACA CACAGACCGGCAGCCTAAAGCCCCCGGGGACAACCCCCACA < 41bp 1 0.323976218174218 1 0.12311577796936 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21957337 chr8:21957333 nonsynonymous SNV 0.007 2 17 hm5C_associated_SNPs_18392 0 0 1 0 1 FAM160B2 chr8:21957404 5'GT 21957404 Upstream 72bp
chr11 61503241 61503241 1 + G C CESC 61503225 + 61503205 61503245 41 CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTGAGCG CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTCAGCG < 41bp 1 0.246299693385645 1 0.0673165023326874 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503225 chr11:61503241 nonsynonymous SNV 0.997 4 37 hm5C_associated_SNPs_18393 0 0 1 0 2 DAGLA chr11:61503211 3'AG 61503211 Downstream 31bp
chr11 61503241 61503241 1 + G C CESC 61503225 + 61503205 61503245 41 CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTGAGCG CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTCAGCG < 41bp 1 0.246299693385645 1 0.0673165023326874 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503225 chr11:61503241 nonsynonymous SNV 0.997 4 37 hm5C_associated_SNPs_18393 0 0 1 0 2 DAGLA chr11:61503288 5'GT 61503288 Upstream 48bp
chr12 49725173 49725173 1 + G C CESC 49725165 + 49725145 49725185 41 CTGCACCAACCCTGTGGCTACATTACTCGAATGGCAGGATG CTGCACCAACCCTGTGGCTACATTACTCCAATGGCAGGATG < 41bp 1 0.242458431594673 1 0.055341511964798 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TROAP ENSG00000135451 CDS Human protein_coding chr12:49725165 chr12:49725173 nonsynonymous SNV 0.820 3 29 hm5C_associated_SNPs_18394 0 0 1 0 1 TROAP chr12:49725190 5'GT 49725190 Upstream 18bp
chr12 51108341 51108341 1 + G T CESC 51108355 + 51108335 51108375 41 ATACATGTGTGACAAACTTGCCAAAGCCCCGGCAAAAACAA ATACATTTGTGACAAACTTGCCAAAGCCCCGGCAAAAACAA < 41bp 1 0.168352257301473 1 0.228527903556824 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51108355 chr12:51108341 nonsynonymous SNV 0.999 2 7 hm5C_associated_SNPs_18395 0 0 0 0 1 DIP2B chr12:51108379 5'GT 51108379 Upstream 39bp
chr11 66610676 66610676 1 + G A CESC 66610663 + 66610643 66610683 41 GTGCTGTGGCTGCAGGAGGTCTCCAACCTGTCAGAGTGGCT GTGCTGTGGCTGCAGGAGGTCTCCAACCTGTCAAAGTGGCT < 41bp 1 0.596481385656835 1 0.865642786026001 experiment 0.807037228686331 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout C11orf80 ENSG00000173715 CDS Human protein_coding chr11:66610663 chr11:66610676 nonsynonymous SNV 0.970 2 34 hm5C_associated_SNPs_18396 0 0 1 0 1 C11orf80 chr11:66610640 3'AG 66610640 Downstream 37bp
chr9 110086276 110086276 1 + G A CESC 110086266 + 110086246 110086286 41 TGCTTCCAGCGTTACTACAGCAGATAGGTCGAGAGAATCCT TGCTTCCAGCGTTACTACAGCAGATAGGTCAAGAGAATCCT < 41bp 1 0.267593218169053 1 0.157477259635925 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD23B ENSG00000119318 CDS Human protein_coding chr9:110086266 chr9:110086276 nonsynonymous SNV 0.996 3 31 hm5C_associated_SNPs_18397 0 0 1 0 1 RAD23B chr9:110086298 5'GT 110086298 Upstream 23bp
chr11 61490980 61490980 1 + C T CESC 61490991 + 61490971 61491011 41 CCCACGGGCCGCACCTTTGTCAAGCTGAGAGCCACCAAGAG CCCACGGGCTGCACCTTTGTCAAGCTGAGAGCCACCAAGAG < 41bp 1 0.435056549536837 1 0.882670402526855 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DAGLA ENSG00000134780 CDS Human protein_coding chr11:61490991 chr11:61490980 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_18399 0 0 0 0 2 DAGLA chr11:61490906 3'AG 61490906 Downstream 75bp
chr11 61490980 61490980 1 + C T CESC 61490991 + 61490971 61491011 41 CCCACGGGCCGCACCTTTGTCAAGCTGAGAGCCACCAAGAG CCCACGGGCTGCACCTTTGTCAAGCTGAGAGCCACCAAGAG < 41bp 1 0.435056549536837 1 0.882670402526855 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DAGLA ENSG00000134780 CDS Human protein_coding chr11:61490991 chr11:61490980 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_18399 0 0 0 0 2 DAGLA chr11:61491044 5'GT 61491044 Upstream 65bp
chr19 54967167 54967167 1 + T C CESC 54967152 + 54967132 54967172 41 TGCTGTATTCTCAGGCTGACCCGGGAGCCTGTGGCTGAGAG TGCTGTATTCTCAGGCTGACCCGGGAGCCTGTGGCCGAGAG < 41bp 1 0.565573208252725 1 0.803675651550293 experiment 0.868853583494551 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54967152 chr19:54967167 synonymous SNV . 0 36 hm5C_associated_SNPs_18400 0 0 1 0 1 LENG8 chr19:54967146 3'AG 54967146 Downstream 22bp
chr6 117859954 117859954 1 + G A CESC 117859950 + 117859930 117859970 41 ACAGTAGCAACAACCACAAACCACGAGAGTGGCTGGAGATC ACAGTAGCAACAACCACAAACCACAAGAGTGGCTGGAGATC < 41bp 1 0.406639146809815 1 0.280404210090637 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117859950 chr6:117859954 nonsynonymous SNV 0.436 1 25 hm5C_associated_SNPs_18401 0 0 0 0 1 DCBLD1 chr6:117859998 5'GT 117859998 Upstream 45bp
chr15 25213164 25213164 1 + G A CESC 25213171 + 25213151 25213191 41 GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA GGCATTCTTAGCTAAGACACCAAGAGGTGGTTAAAGCCATA < 41bp 1 0.759612587218841 1 0.414415121078491 experiment 0.480774825562319 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNURF ENSG00000214265;ENSG00000273173 CDS Human other chr15:25213171 chr15:25213164 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_18404 0 0 0 0 2 SNURF chr15:25213079 3'AG 25213079 Downstream 86bp
chr15 25213164 25213164 1 + G A CESC 25213171 + 25213151 25213191 41 GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA GGCATTCTTAGCTAAGACACCAAGAGGTGGTTAAAGCCATA < 41bp 1 0.759612587218841 1 0.414415121078491 experiment 0.480774825562319 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNURF ENSG00000214265;ENSG00000273173 CDS Human other chr15:25213171 chr15:25213164 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_18404 0 0 0 0 2 SNHG14 chr15:25213229 5'GT 25213229 Upstream 66bp
chr17 4859382 4859382 1 + C T CESC 4859363 + 4859343 4859383 41 CCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCA CCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGTA < 41bp 1 0.176514666336323 1 0.0893726050853729 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859363 chr17:4859382 synonymous SNV . 0 40 hm5C_associated_SNPs_18405 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 21bp
chr17 4859382 4859382 1 + C T CESC 4859363 + 4859343 4859383 41 CCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCA CCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGTA < 41bp 1 0.176514666336323 1 0.0893726050853729 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859363 chr17:4859382 synonymous SNV . 0 40 hm5C_associated_SNPs_18405 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 57bp
chr17 4859382 4859382 1 + C T CESC 4859364 + 4859344 4859384 41 CCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCAA CCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGTAA < 41bp 1 0.236664883960922 1 0.294217258691788 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859364 chr17:4859382 synonymous SNV . 0 39 hm5C_associated_SNPs_18406 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 21bp
chr17 4859382 4859382 1 + C T CESC 4859364 + 4859344 4859384 41 CCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCAA CCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGTAA < 41bp 1 0.236664883960922 1 0.294217258691788 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859364 chr17:4859382 synonymous SNV . 0 39 hm5C_associated_SNPs_18406 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 57bp
chr17 4859382 4859382 1 + C T CESC 4859378 + 4859358 4859398 41 CCAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA CCAGGCCGTTGAGAAGAAGGCCTGTAACTGTCTGCTGCTGA < 41bp 1 0.194430405581885 1 0.0749082863330841 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859378 chr17:4859382 synonymous SNV . 0 25 hm5C_associated_SNPs_18407 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 21bp
chr17 4859382 4859382 1 + C T CESC 4859378 + 4859358 4859398 41 CCAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA CCAGGCCGTTGAGAAGAAGGCCTGTAACTGTCTGCTGCTGA < 41bp 1 0.194430405581885 1 0.0749082863330841 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859378 chr17:4859382 synonymous SNV . 0 25 hm5C_associated_SNPs_18407 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 57bp
chr17 4859382 4859382 1 + C T CESC 4859379 + 4859359 4859399 41 CAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAA CAGGCCGTTGAGAAGAAGGCCTGTAACTGTCTGCTGCTGAA < 41bp 1 0.521347311179819 1 0.0727366209030151 experiment 0.957305377640362 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859379 chr17:4859382 synonymous SNV . 0 24 hm5C_associated_SNPs_18408 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 21bp
chr17 4859382 4859382 1 + C T CESC 4859379 + 4859359 4859399 41 CAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAA CAGGCCGTTGAGAAGAAGGCCTGTAACTGTCTGCTGCTGAA < 41bp 1 0.521347311179819 1 0.0727366209030151 experiment 0.957305377640362 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859379 chr17:4859382 synonymous SNV . 0 24 hm5C_associated_SNPs_18408 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 57bp
chr17 4859382 4859382 1 + C T CESC 4859385 + 4859365 4859405 41 GTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAA GTTGAGAAGAAGGCCTGTAACTGTCTGCTGCTGAAGGTCAA < 41bp 1 0.571238223876254 1 0.1211818754673 experiment 0.857523552247492 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859385 chr17:4859382 synonymous SNV . 0 18 hm5C_associated_SNPs_18409 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 21bp
chr17 4859382 4859382 1 + C T CESC 4859385 + 4859365 4859405 41 GTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAA GTTGAGAAGAAGGCCTGTAACTGTCTGCTGCTGAAGGTCAA < 41bp 1 0.571238223876254 1 0.1211818754673 experiment 0.857523552247492 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859385 chr17:4859382 synonymous SNV . 0 18 hm5C_associated_SNPs_18409 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 57bp
chr17 4859382 4859382 1 + C T CESC 4859389 + 4859369 4859409 41 AGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAG AGAAGAAGGCCTGTAACTGTCTGCTGCTGAAGGTCAACCAG < 41bp 1 0.77641711029583 1 0.525823533535004 experiment 0.447165779408341 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859389 chr17:4859382 synonymous SNV . 0 14 hm5C_associated_SNPs_18410 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 21bp
chr17 4859382 4859382 1 + C T CESC 4859389 + 4859369 4859409 41 AGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAG AGAAGAAGGCCTGTAACTGTCTGCTGCTGAAGGTCAACCAG < 41bp 1 0.77641711029583 1 0.525823533535004 experiment 0.447165779408341 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859389 chr17:4859382 synonymous SNV . 0 14 hm5C_associated_SNPs_18410 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 57bp
chr17 4859382 4859382 1 + C T CESC 4859392 + 4859372 4859412 41 AGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAGATC AGAAGGCCTGTAACTGTCTGCTGCTGAAGGTCAACCAGATC < 41bp 1 0.418416555325616 1 0.276124775409698 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859392 chr17:4859382 synonymous SNV . 0 11 hm5C_associated_SNPs_18411 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 21bp
chr17 4859382 4859382 1 + C T CESC 4859392 + 4859372 4859412 41 AGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAGATC AGAAGGCCTGTAACTGTCTGCTGCTGAAGGTCAACCAGATC < 41bp 1 0.418416555325616 1 0.276124775409698 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859392 chr17:4859382 synonymous SNV . 0 11 hm5C_associated_SNPs_18411 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 57bp
chr20 61291826 61291826 1 + C T CESC 61291833 + 61291813 61291853 41 GGCTTCCTGGGCTCTGGGGCCGCTGCTTTCTTCACCGCCGT GGCTTCCTGGGCTTTGGGGCCGCTGCTTTCTTCACCGCCGT < 41bp 1 0.425805406602235 1 0.392410486936569 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61291833 chr20:61291826 nonsynonymous SNV 0.027 1 14 hm5C_associated_SNPs_18412 0 0 0 1 2 SLCO4A1 chr20:61291764 3'AG 61291764 Downstream 63bp
chr20 61291826 61291826 1 + C T CESC 61291833 + 61291813 61291853 41 GGCTTCCTGGGCTCTGGGGCCGCTGCTTTCTTCACCGCCGT GGCTTCCTGGGCTTTGGGGCCGCTGCTTTCTTCACCGCCGT < 41bp 1 0.425805406602235 1 0.392410486936569 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61291833 chr20:61291826 nonsynonymous SNV 0.027 1 14 hm5C_associated_SNPs_18412 0 0 0 1 2 SLCO4A1 chr20:61291885 5'GT 61291885 Upstream 60bp
chr19 18543848 18543848 1 + G A CESC 18543840 + 18543820 18543860 41 GAACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTG GAACCCCATCGGGCAGGGCGCCGGCAGGACTAATGTGAGTG < 41bp 1 0.146451934230158 1 0.340990543365479 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543840 chr19:18543848 nonsynonymous SNV 0.993 0 29 hm5C_associated_SNPs_18413 0 0 1 0 2 SSBP4 chr19:18543783 3'AG 18543783 Downstream 66bp
chr19 18543848 18543848 1 + G A CESC 18543840 + 18543820 18543860 41 GAACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTG GAACCCCATCGGGCAGGGCGCCGGCAGGACTAATGTGAGTG < 41bp 1 0.146451934230158 1 0.340990543365479 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543840 chr19:18543848 nonsynonymous SNV 0.993 0 29 hm5C_associated_SNPs_18413 0 0 1 0 2 SSBP4 chr19:18543853 5'GT 18543853 Upstream 6bp
chr19 18543848 18543848 1 + G A CESC 18543841 + 18543821 18543861 41 AACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTGG AACCCCATCGGGCAGGGCGCCGGCAGGACTAATGTGAGTGG < 41bp 1 0.654731705783085 1 0.517574191093445 experiment 0.69053658843383 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543841 chr19:18543848 nonsynonymous SNV 0.993 0 28 hm5C_associated_SNPs_18414 0 0 1 0 2 SSBP4 chr19:18543783 3'AG 18543783 Downstream 66bp
chr19 18543848 18543848 1 + G A CESC 18543841 + 18543821 18543861 41 AACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTGG AACCCCATCGGGCAGGGCGCCGGCAGGACTAATGTGAGTGG < 41bp 1 0.654731705783085 1 0.517574191093445 experiment 0.69053658843383 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543841 chr19:18543848 nonsynonymous SNV 0.993 0 28 hm5C_associated_SNPs_18414 0 0 1 0 2 SSBP4 chr19:18543853 5'GT 18543853 Upstream 6bp
chr6 110062692 110062692 1 + G C CESC 110062698 + 110062678 110062718 41 CACTCTAATAGCTAGAAGATCCAGTAAATTTGCTGGCACCC CACTCTAATAGCTACAAGATCCAGTAAATTTGCTGGCACCC < 41bp 1 0.173826227901611 1 0.900284647941589 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FIG4 ENSG00000112367 CDS Human protein_coding chr6:110062698 chr6:110062692 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_18416 0 0 0 0 2 FIG4 chr6:110062647 3'AG 110062647 Downstream 46bp
chr6 110062692 110062692 1 + G C CESC 110062698 + 110062678 110062718 41 CACTCTAATAGCTAGAAGATCCAGTAAATTTGCTGGCACCC CACTCTAATAGCTACAAGATCCAGTAAATTTGCTGGCACCC < 41bp 1 0.173826227901611 1 0.900284647941589 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FIG4 ENSG00000112367 CDS Human protein_coding chr6:110062698 chr6:110062692 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_18416 0 0 0 0 2 FIG4 chr6:110062747 5'GT 110062747 Upstream 56bp
chr2 15732065 15732065 1 + C T CESC 15732066 + 15732046 15732086 41 GACGGGGTGAAGATGGCGGCCTTCTCCGGTGCGTTTGTGGA GACGGGGTGAAGATGGCGGTCTTCTCCGGTGCGTTTGTGGA < 41bp 1 0.362775406120684 1 0.0958719253540039 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX1 ENSG00000079785 CDS Human protein_coding chr2:15732066 chr2:15732065 nonsynonymous SNV 0.994 1 20 hm5C_associated_SNPs_18418 0 0 1 0 1 DDX1 chr2:15732073 5'GT 15732073 Upstream 9bp
chr19 10794119 10794119 1 + C A CESC 10794136 + 10794116 10794156 41 TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG TGCACTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG < 41bp 1 0.409855147276691 1 0.081492006778717 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794136 chr19:10794119 synonymous SNV . 0 4 hm5C_associated_SNPs_18419 0 0 1 0 2 ILF3 chr19:10794042 3'AG 10794042 Downstream 78bp
chr19 10794119 10794119 1 + C A CESC 10794136 + 10794116 10794156 41 TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG TGCACTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG < 41bp 1 0.409855147276691 1 0.081492006778717 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794136 chr19:10794119 synonymous SNV . 0 4 hm5C_associated_SNPs_18419 0 0 1 0 2 ILF3 chr19:10794218 5'GT 10794218 Upstream 100bp
chr17 45376746 45376746 1 + C T CESC 45376744 + 45376724 45376764 41 GGCTACTACTGCAACTGTACCACGCGTACTGACACCTGCAT GGCTACTACTGCAACTGTACCATGCGTACTGACACCTGCAT < 41bp 1 0.290072707766761 1 0.256591409444809 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45376744 chr17:45376746 nonsynonymous SNV 0.407 4 23 hm5C_associated_SNPs_18423 0 0 0 0 1 ITGB3 chr17:45376674 3'AG 45376674 Downstream 73bp
chr19 50385612 50385612 1 + G A CESC 50385593 + 50385573 50385613 41 GCAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCGC GCAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCAC < 41bp 1 0.324008352643668 1 0.205682158470154 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385593 chr19:50385612 synonymous SNV . 0 40 hm5C_associated_SNPs_18424 0 0 1 0 1 TBC1D17 chr19:50385657 5'GT 50385657 Upstream 46bp
chr19 50385612 50385612 1 + G A CESC 50385594 + 50385574 50385614 41 CAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCGCC CAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCACC < 41bp 1 0.501905916850749 1 0.313504159450531 experiment 0.996188166298501 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385594 chr19:50385612 synonymous SNV . 0 39 hm5C_associated_SNPs_18425 0 0 1 0 1 TBC1D17 chr19:50385657 5'GT 50385657 Upstream 46bp
chr22 24583366 24583366 1 + C T CESC 24583360 + 24583340 24583380 41 GACGACTTCACCCTGCACAGCGGGCGCGTCCTGCCCCCAGG GACGACTTCACCCTGCACAGCGGGCGTGTCCTGCCCCCAGG < 41bp 1 0.692792142498111 1 0.639553844928741 experiment 0.614415715003777 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24583360 chr22:24583366 synonymous SNV . 0 27 hm5C_associated_SNPs_18426 0 0 0 0 1 SUSD2 chr22:24583418 5'GT 24583418 Upstream 53bp
chr6 158492661 158492661 1 + G A CESC 158492660 + 158492640 158492680 41 AGCCATCGACACAGTGAAGACGGGCATGGGGGGCAAGGCGG AGCCATCGACACAGTGAAGACAGGCATGGGGGGCAAGGCGG < 41bp 1 0.670613600588044 1 0.494505107402802 experiment 0.658772798823912 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158492660 chr6:158492661 synonymous SNV . 0 22 hm5C_associated_SNPs_18429 0 0 1 0 1 SYNJ2 chr6:158492634 3'AG 158492634 Downstream 28bp
chr19 30498497 30498497 1 + G A CESC 30498487 + 30498467 30498507 41 ATTTGCTAGCTGATAAAGAACTGTGGGCTCGACTTGAAGAA ATTTGCTAGCTGATAAAGAACTGTGGGCTCAACTTGAAGAA < 41bp 1 0.700616818211632 1 0.0387716591358185 experiment 0.598766363576736 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control URI1 ENSG00000105176 CDS Human protein_coding chr19:30498487 chr19:30498497 nonsynonymous SNV 0.997 3 31 hm5C_associated_SNPs_18433 0 0 1 0 1 URI1 chr19:30498545 5'GT 30498545 Upstream 49bp
chr18 9182466 9182466 1 + T C CESC 9182456 + 9182436 9182476 41 CAAATCTGGGTTCACAAAACCAATTCAGAGTGAAAATTCTG CAAATCTGGGTTCACAAAACCAATTCAGAGCGAAAATTCTG < 41bp 1 0.104936230976451 1 0.0529138147830963 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD12 ENSG00000101745 CDS Human processed_transcript chr18:9182456 chr18:9182466 synonymous SNV . 0 31 hm5C_associated_SNPs_18434 0 0 1 0 2 ANKRD12 chr18:9182380 3'AG 9182380 Downstream 87bp
chr18 9182466 9182466 1 + T C CESC 9182456 + 9182436 9182476 41 CAAATCTGGGTTCACAAAACCAATTCAGAGTGAAAATTCTG CAAATCTGGGTTCACAAAACCAATTCAGAGCGAAAATTCTG < 41bp 1 0.104936230976451 1 0.0529138147830963 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD12 ENSG00000101745 CDS Human protein_coding chr18:9182456 chr18:9182466 synonymous SNV . 0 31 hm5C_associated_SNPs_18434 0 0 1 0 2 ANKRD12 chr18:9182517 5'GT 9182517 Upstream 52bp
chr3 126725011 126725011 1 + G A CESC 126725001 + 126724981 126725021 41 TCTGTGGACTTCGTCTTCTACAACTGCAGCGTCCACCAGTC TCTGTGGACTTCGTCTTCTACAACTGCAGCATCCACCAGTC < 41bp 1 0.292447749092541 1 0.202575534582138 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126725001 chr3:126725011 nonsynonymous SNV 0.997 1 31 hm5C_associated_SNPs_18435 0 0 1 0 2 PLXNA1 chr3:126724922 3'AG 126724922 Downstream 90bp
chr3 126725011 126725011 1 + G A CESC 126725001 + 126724981 126725021 41 TCTGTGGACTTCGTCTTCTACAACTGCAGCGTCCACCAGTC TCTGTGGACTTCGTCTTCTACAACTGCAGCATCCACCAGTC < 41bp 1 0.292447749092541 1 0.202575534582138 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126725001 chr3:126725011 nonsynonymous SNV 0.997 1 31 hm5C_associated_SNPs_18435 0 0 1 0 2 PLXNA1 chr3:126725021 5'GT 126725021 Upstream 11bp
chr6 44107311 44107311 1 + T A CESC 44107298 + 44107278 44107318 41 TGCTGGTGGTTGTGGGCGTCCTCTCCGTAGGCATCGTGCTG TGCTGGTGGTTGTGGGCGTCCTCTCCGTAGGCAACGTGCTG < 41bp 1 0.297911270592636 1 0.100626140832901 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44107298 chr6:44107311 nonsynonymous SNV 0.999 2 34 hm5C_associated_SNPs_18436 0 0 1 0 1 TMEM63B chr6:44107346 5'GT 44107346 Upstream 36bp
chrX 100088436 100088436 1 + C T CESC 100088446 + 100088426 100088466 41 AACATGGGGGCGGTTGTCCCCCAGGGATCCAGACAGGTATG AACATGGGGGTGGTTGTCCCCCAGGGATCCAGACAGGTATG < 41bp 1 0.625748899461036 1 0.59055894613266 experiment 0.748502201077927 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100088446 chrX:100088436 nonsynonymous SNV 0.876 4 11 hm5C_associated_SNPs_18437 0 0 1 0 1 CSTF2 chrX:100088461 5'GT 100088461 Upstream 26bp
chr16 697471 697471 1 + G A CESC 697463 + 697443 697483 41 GTGTGAATGGCCGGCGGGCCCCCTCCACGTCCCCATCCTTC GTGTGAATGGCCGGCGGGCCCCCTCCACATCCCCATCCTTC < 41bp 1 0.122825456358706 1 0.0469447076320648 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MCRIP2 ENSG00000172366 CDS Human protein_coding chr16:697463 chr16:697471 synonymous SNV . 0 29 hm5C_associated_SNPs_18439 0 0 1 0 1 MCRIP2 chr16:697417 3'AG 697417 Downstream 55bp
chr6 31929372 31929372 1 + C G CESC 31929378 + 31929358 31929398 41 CAGAGCCTCCATCTCAGGAGCAGTGGGCCATCCCTGTGGAC CAGAGCCTCCATCTGAGGAGCAGTGGGCCATCCCTGTGGAC < 41bp 1 0.27195059529408 1 0.512403666973114 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31929378 chr6:31929372 stopgain 0.904 0 15 hm5C_associated_SNPs_18444 0 0 1 0 2 SKIV2L chr6:31929324 3'AG 31929324 Downstream 49bp
chr6 31929372 31929372 1 + C G CESC 31929378 + 31929358 31929398 41 CAGAGCCTCCATCTCAGGAGCAGTGGGCCATCCCTGTGGAC CAGAGCCTCCATCTGAGGAGCAGTGGGCCATCCCTGTGGAC < 41bp 1 0.27195059529408 1 0.512403666973114 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31929378 chr6:31929372 stopgain 0.904 0 15 hm5C_associated_SNPs_18444 0 0 1 0 2 SKIV2L chr6:31929452 5'GT 31929452 Upstream 81bp
chr5 74865228 74865228 1 + G A CESC 74865247 + 74865227 74865267 41 TGACATGGATGCTTTCTATGCAGCTGTAGAAATGAGGGACA TAACATGGATGCTTTCTATGCAGCTGTAGAAATGAGGGACA < 41bp 1 0.708830518087202 1 0.204555988311768 experiment 0.582338963825596 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLK ENSG00000122008 CDS Human protein_coding chr5:74865247 chr5:74865228 nonsynonymous SNV 1.000 5 2 hm5C_associated_SNPs_18446 0 0 1 1 1 POLK chr5:74865165 3'AG 74865165 Downstream 64bp
chr2 99162457 99162457 1 + G C CESC 99162438 + 99162418 99162458 41 ATTCCATTTCTTAGGGCCCTCGTTTAAAGCAAGCAGTTTGA ATTCCATTTCTTAGGGCCCTCGTTTAAAGCAAGCAGTTTCA < 41bp 1 0.0233654576369491 1 0.148931473493576 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99162438 chr2:99162457 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_18447 0 0 0 0 2 INPP4A chr2:99162432 3'AG 99162432 Downstream 26bp
chr2 99162457 99162457 1 + G C CESC 99162438 + 99162418 99162458 41 ATTCCATTTCTTAGGGCCCTCGTTTAAAGCAAGCAGTTTGA ATTCCATTTCTTAGGGCCCTCGTTTAAAGCAAGCAGTTTCA < 41bp 1 0.0233654576369491 1 0.148931473493576 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99162438 chr2:99162457 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_18447 0 0 0 0 2 INPP4A chr2:99162536 5'GT 99162536 Upstream 80bp
chr2 99162457 99162457 1 + G C CESC 99162451 + 99162431 99162471 41 GGGCCCTCGTTTAAAGCAAGCAGTTTGAAAGCAGATAAAAA GGGCCCTCGTTTAAAGCAAGCAGTTTCAAAGCAGATAAAAA < 41bp 1 0.0385269150437866 1 0.0887615084648132 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99162451 chr2:99162457 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_18448 0 0 0 0 2 INPP4A chr2:99162432 3'AG 99162432 Downstream 26bp
chr2 99162457 99162457 1 + G C CESC 99162451 + 99162431 99162471 41 GGGCCCTCGTTTAAAGCAAGCAGTTTGAAAGCAGATAAAAA GGGCCCTCGTTTAAAGCAAGCAGTTTCAAAGCAGATAAAAA < 41bp 1 0.0385269150437866 1 0.0887615084648132 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99162451 chr2:99162457 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_18448 0 0 0 0 2 INPP4A chr2:99162536 5'GT 99162536 Upstream 80bp
chr6 47577036 47577036 1 + C G CESC 47577024 + 47577004 47577044 41 TGTTGTGCATTGTAGAAGCACTGAAAAAGGATCACGGGTAA TGTTGTGCATTGTAGAAGCACTGAAAAAGGATGACGGGTAA < 41bp 1 0.656221846364972 1 0.470941424369812 experiment 0.687556307270057 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47577024 chr6:47577036 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_18449 0 0 1 0 1 CD2AP chr6:47577040 5'GT 47577040 Upstream 5bp
chr11 61491027 61491027 1 + G A CESC 61491024 + 61491004 61491044 41 ACCAAGAGGAGGCAGCGTAACCTGCGGACCTACAACCTGCG ACCAAGAGGAGGCAGCGTAACCTACGGACCTACAACCTGCG < 41bp 1 0.0389838882651122 1 0.0690791606903076 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61491024 chr11:61491027 synonymous SNV . 0 24 hm5C_associated_SNPs_18450 0 0 0 0 1 DAGLA chr11:61491044 5'GT 61491044 Upstream 18bp
chr19 58797541 58797541 1 + G T CESC 58797552 + 58797532 58797572 41 TGGGTGGCTGAGAGAGGAACCACCCAGGGCTGCCATCCAGG TGGGTGGCTTAGAGAGGAACCACCCAGGGCTGCCATCCAGG < 41bp 1 0.394676918471062 1 0.131765216588974 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF8 ENSG00000083842;ENSG00000273439 CDS Human other chr19:58797552 chr19:58797541 stopgain 0.282 0 10 hm5C_associated_SNPs_18452 0 0 1 0 2 ZNF8 chr19:58797476 3'AG 58797476 Downstream 66bp
chr19 58797541 58797541 1 + G T CESC 58797552 + 58797532 58797572 41 TGGGTGGCTGAGAGAGGAACCACCCAGGGCTGCCATCCAGG TGGGTGGCTTAGAGAGGAACCACCCAGGGCTGCCATCCAGG < 41bp 1 0.394676918471062 1 0.131765216588974 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF8 ENSG00000083842;ENSG00000273439 CDS Human other chr19:58797552 chr19:58797541 stopgain 0.282 0 10 hm5C_associated_SNPs_18452 0 0 1 0 2 ZNF8 chr19:58797571 5'GT 58797571 Upstream 31bp
chr10 105048215 105048215 1 + G A CESC 105048230 + 105048210 105048250 41 ACCTAGAATCCTCAGTGCTACAACCTCCAAAGTCTCATCCA ACCTAAAATCCTCAGTGCTACAACCTCCAAAGTCTCATCCA < 41bp 1 0.301535543012838 1 0.168092280626297 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control INA ENSG00000148798 CDS Human protein_coding chr10:105048230 chr10:105048215 nonsynonymous SNV 0.946 2 6 hm5C_associated_SNPs_18453 0 0 0 0 1 INA chr10:105048117 3'AG 105048117 Downstream 99bp
chr10 7842008 7842008 1 + G A CESC 7841992 + 7841972 7842012 41 TGTTTTTGTCAATTCTAGGTCTGTCATCTCCTATAAGACAG TGTTTTTGTCAATTCTAGGTCTGTCATCTCCTATAAAACAG < 41bp 1 0.1602396863809 1 0.0632224678993225 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7841992 chr10:7842008 synonymous SNV . 0 37 hm5C_associated_SNPs_18454 0 0 1 0 2 ATP5C1 chr10:7841990 3'AG 7841990 Downstream 19bp
chr10 7842008 7842008 1 + G A CESC 7841992 + 7841972 7842012 41 TGTTTTTGTCAATTCTAGGTCTGTCATCTCCTATAAGACAG TGTTTTTGTCAATTCTAGGTCTGTCATCTCCTATAAAACAG < 41bp 1 0.1602396863809 1 0.0632224678993225 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7841992 chr10:7842008 synonymous SNV . 0 37 hm5C_associated_SNPs_18454 0 0 1 0 2 ATP5C1 chr10:7842054 5'GT 7842054 Upstream 47bp
chr10 7842008 7842008 1 + G A CESC 7841996 + 7841976 7842016 41 TTTGTCAATTCTAGGTCTGTCATCTCCTATAAGACAGAAGA TTTGTCAATTCTAGGTCTGTCATCTCCTATAAAACAGAAGA < 41bp 1 0.120393896538241 1 0.139369934797287 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7841996 chr10:7842008 synonymous SNV . 0 33 hm5C_associated_SNPs_18455 0 0 1 0 2 ATP5C1 chr10:7841990 3'AG 7841990 Downstream 19bp
chr10 7842008 7842008 1 + G A CESC 7841996 + 7841976 7842016 41 TTTGTCAATTCTAGGTCTGTCATCTCCTATAAGACAGAAGA TTTGTCAATTCTAGGTCTGTCATCTCCTATAAAACAGAAGA < 41bp 1 0.120393896538241 1 0.139369934797287 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7841996 chr10:7842008 synonymous SNV . 0 33 hm5C_associated_SNPs_18455 0 0 1 0 2 ATP5C1 chr10:7842054 5'GT 7842054 Upstream 47bp
chr10 7842008 7842008 1 + G A CESC 7841999 + 7841979 7842019 41 GTCAATTCTAGGTCTGTCATCTCCTATAAGACAGAAGAAAA GTCAATTCTAGGTCTGTCATCTCCTATAAAACAGAAGAAAA < 41bp 1 0.478634712840553 1 0.530000448226929 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7841999 chr10:7842008 synonymous SNV . 0 30 hm5C_associated_SNPs_18456 0 0 1 0 2 ATP5C1 chr10:7841990 3'AG 7841990 Downstream 19bp
chr10 7842008 7842008 1 + G A CESC 7841999 + 7841979 7842019 41 GTCAATTCTAGGTCTGTCATCTCCTATAAGACAGAAGAAAA GTCAATTCTAGGTCTGTCATCTCCTATAAAACAGAAGAAAA < 41bp 1 0.478634712840553 1 0.530000448226929 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7841999 chr10:7842008 synonymous SNV . 0 30 hm5C_associated_SNPs_18456 0 0 1 0 2 ATP5C1 chr10:7842054 5'GT 7842054 Upstream 47bp
chr10 7842008 7842008 1 + G A CESC 7842001 + 7841981 7842021 41 CAATTCTAGGTCTGTCATCTCCTATAAGACAGAAGAAAAGC CAATTCTAGGTCTGTCATCTCCTATAAAACAGAAGAAAAGC < 41bp 1 0.0594302817167897 1 0.53423011302948 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7842001 chr10:7842008 synonymous SNV . 0 28 hm5C_associated_SNPs_18457 0 0 1 0 2 ATP5C1 chr10:7841990 3'AG 7841990 Downstream 19bp
chr10 7842008 7842008 1 + G A CESC 7842001 + 7841981 7842021 41 CAATTCTAGGTCTGTCATCTCCTATAAGACAGAAGAAAAGC CAATTCTAGGTCTGTCATCTCCTATAAAACAGAAGAAAAGC < 41bp 1 0.0594302817167897 1 0.53423011302948 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7842001 chr10:7842008 synonymous SNV . 0 28 hm5C_associated_SNPs_18457 0 0 1 0 2 ATP5C1 chr10:7842054 5'GT 7842054 Upstream 47bp
chr10 7842008 7842008 1 + G A CESC 7842002 + 7841982 7842022 41 AATTCTAGGTCTGTCATCTCCTATAAGACAGAAGAAAAGCC AATTCTAGGTCTGTCATCTCCTATAAAACAGAAGAAAAGCC < 41bp 1 0.45343447358909 1 0.597342729568481 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7842002 chr10:7842008 synonymous SNV . 0 27 hm5C_associated_SNPs_18458 0 0 1 0 2 ATP5C1 chr10:7841990 3'AG 7841990 Downstream 19bp
chr10 7842008 7842008 1 + G A CESC 7842002 + 7841982 7842022 41 AATTCTAGGTCTGTCATCTCCTATAAGACAGAAGAAAAGCC AATTCTAGGTCTGTCATCTCCTATAAAACAGAAGAAAAGCC < 41bp 1 0.45343447358909 1 0.597342729568481 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7842002 chr10:7842008 synonymous SNV . 0 27 hm5C_associated_SNPs_18458 0 0 1 0 2 ATP5C1 chr10:7842054 5'GT 7842054 Upstream 47bp
chr10 106014929 106014929 1 + C A CESC 106014932 + 106014912 106014952 41 CCCCGGCAGGAAGCGCGCCCCCGGGGCCGGTCCCGGAGGGC CCCCGGCAGGAAGCGCGACCCCGGGGCCGGTCCCGGAGGGC < 41bp 1 0.78933267364099 1 0.909861445426941 experiment 0.42133465271802 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GSTO1 ENSG00000148834 CDS Human protein_coding chr10:106014932 chr10:106014929 nonsynonymous SNV 0.988 1 18 hm5C_associated_SNPs_18459 0 0 1 0 1 GSTO1 chr10:106014921 3'AG 106014921 Downstream 9bp
chr7 4260916 4260916 1 + C G CESC 4260905 + 4260885 4260925 41 CCTAGAGATGTCCTGGTCACCAAGTCCGCCTCTGAACTGAC CCTAGAGATGTCCTGGTCACCAAGTCCGCCTGTGAACTGAC < 41bp 1 0.233467829087328 1 0.4902483522892 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SDK1 ENSG00000146555 CDS Human protein_coding chr7:4260905 chr7:4260916 nonsynonymous SNV 0.766 4 32 hm5C_associated_SNPs_18460 0 0 0 0 2 SDK1 chr7:4260871 3'AG 4260871 Downstream 46bp
chr7 4260916 4260916 1 + C G CESC 4260905 + 4260885 4260925 41 CCTAGAGATGTCCTGGTCACCAAGTCCGCCTCTGAACTGAC CCTAGAGATGTCCTGGTCACCAAGTCCGCCTGTGAACTGAC < 41bp 1 0.233467829087328 1 0.4902483522892 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SDK1 ENSG00000146555 CDS Human protein_coding chr7:4260905 chr7:4260916 nonsynonymous SNV 0.766 4 32 hm5C_associated_SNPs_18460 0 0 0 0 2 SDK1 chr7:4260996 5'GT 4260996 Upstream 81bp
chr16 1703045 1703045 1 + G A CESC 1703054 + 1703034 1703074 41 GCTTGAGTGATGAAGAGGACCAGAAGCCAGTGCGCCTGCCT GCTTGAGTGATAAAGAGGACCAGAAGCCAGTGCGCCTGCCT < 41bp 1 0.536104859915574 1 0.778140962123871 experiment 0.927790280168851 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CRAMP1 ENSG00000007545 CDS Human protein_coding chr16:1703054 chr16:1703045 nonsynonymous SNV 0.965 1 12 hm5C_associated_SNPs_18462 0 0 1 0 1 CRAMP1 chr16:1703034 3'AG 1703034 Downstream 12bp
chr1 201966484 201966484 1 + G C CESC 201966479 + 201966459 201966499 41 CTTCATGCCACCGTCCTTTCCATTTGGAGGAATGGAGAACC CTTCATGCCACCGTCCTTTCCATTTCGAGGAATGGAGAACC < 41bp 1 0.105730764828534 1 0.278356432914734 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNPEP ENSG00000176393 CDS Human protein_coding chr1:201966479 chr1:201966484 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_18463 0 0 1 0 1 RNPEP chr1:201966447 3'AG 201966447 Downstream 38bp
chr12 109539758 109539758 1 + C T CESC 109539764 + 109539744 109539784 41 GACCTAATCAAGCTCACGGGCTCTGCTTTAGTGTTCAAAGG GACCTAATCAAGCTTACGGGCTCTGCTTTAGTGTTCAAAGG < 41bp 1 0.291546417056016 1 0.194214254617691 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109539764 chr12:109539758 nonsynonymous SNV 0.932 4 15 hm5C_associated_SNPs_18464 0 0 1 0 2 UNG chr12:109539707 3'AG 109539707 Downstream 52bp
chr12 109539758 109539758 1 + C T CESC 109539764 + 109539744 109539784 41 GACCTAATCAAGCTCACGGGCTCTGCTTTAGTGTTCAAAGG GACCTAATCAAGCTTACGGGCTCTGCTTTAGTGTTCAAAGG < 41bp 1 0.291546417056016 1 0.194214254617691 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109539764 chr12:109539758 nonsynonymous SNV 0.932 4 15 hm5C_associated_SNPs_18464 0 0 1 0 2 UNG chr12:109539804 5'GT 109539804 Upstream 47bp
chr17 43214086 43214086 1 + G A CESC 43214071 + 43214051 43214091 41 GCCCCCAGGGACGCCTGGAACAGTCTGGGCAAGATGAGCAG GCCCCCAGGGACGCCTGGAACAGTCTGGGCAAGATAAGCAG < 41bp 1 0.594486851575515 1 0.326056063175201 experiment 0.811026296848969 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43214071 chr17:43214086 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_18466 0 0 1 0 2 ACBD4 chr17:43214059 3'AG 43214059 Downstream 28bp
chr17 43214086 43214086 1 + G A CESC 43214071 + 43214051 43214091 41 GCCCCCAGGGACGCCTGGAACAGTCTGGGCAAGATGAGCAG GCCCCCAGGGACGCCTGGAACAGTCTGGGCAAGATAAGCAG < 41bp 1 0.594486851575515 1 0.326056063175201 experiment 0.811026296848969 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43214071 chr17:43214086 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_18466 0 0 1 0 2 ACBD4 chr17:43214143 5'GT 43214143 Upstream 58bp
chr11 399985 399985 1 + C T CESC 399996 + 399976 400016 41 GGAACCTTTCATCCAGCGACCACCTGAAGGACCGCCTGGCC GGAACCTTTTATCCAGCGACCACCTGAAGGACCGCCTGGCC < 41bp 1 0.319764291317348 1 0.279019862413406 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PKP3 ENSG00000184363 CDS Human protein_coding chr11:399996 chr11:399985 nonsynonymous SNV 0.774 3 10 hm5C_associated_SNPs_18467 0 0 1 0 1 PKP3 chr11:399967 3'AG 399967 Downstream 19bp
chr7 55240757 55240757 1 + C T CESC 55240738 + 55240718 55240758 41 CCTCTTGCTGCTGGTGGTGGCCCTGGGGATCGGCCTCTTCA CCTCTTGCTGCTGGTGGTGGCCCTGGGGATCGGCCTCTTTA < 41bp 1 0.260837506322578 1 0.415222316980362 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55240738 chr7:55240757 synonymous SNV . 0 40 hm5C_associated_SNPs_18468 0 0 1 0 2 EGFR chr7:55240676 3'AG 55240676 Downstream 82bp
chr7 55240757 55240757 1 + C T CESC 55240738 + 55240718 55240758 41 CCTCTTGCTGCTGGTGGTGGCCCTGGGGATCGGCCTCTTCA CCTCTTGCTGCTGGTGGTGGCCCTGGGGATCGGCCTCTTTA < 41bp 1 0.260837506322578 1 0.415222316980362 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55240738 chr7:55240757 synonymous SNV . 0 40 hm5C_associated_SNPs_18468 0 0 1 0 2 EGFR chr7:55240817 5'GT 55240817 Upstream 61bp
chr13 41650193 41650193 1 + G T CESC 41650198 + 41650178 41650218 41 AGAATCCAGATGGGAGAAACCTGATGATTTCATTCCACACA AGAATCCAGATGGGATAAACCTGATGATTTCATTCCACACA < 41bp 1 0.653453988113725 1 0.0495828688144684 experiment 0.69309202377255 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WBP4 ENSG00000120688 CDS Human protein_coding chr13:41650198 chr13:41650193 nonsynonymous SNV 0.996 5 16 hm5C_associated_SNPs_18469 0 0 0 0 1 WBP4 chr13:41650180 3'AG 41650180 Downstream 14bp
chr15 40898639 40898639 1 + G A CESC 40898648 + 40898628 40898668 41 GAGGTGGGAATGAAAGAGTTCAGGTAAGTCTTTTGTGCAAA GAGGTGGGAATAAAAGAGTTCAGGTAAGTCTTTTGTGCAAA < 41bp 1 0.508498051757038 1 0.346201479434967 experiment 0.983003896485924 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KNL1 ENSG00000137812 CDS Human protein_coding chr15:40898648 chr15:40898639 nonsynonymous SNV 0.976 2 12 hm5C_associated_SNPs_18470 0 0 1 0 2 KNL1 chr15:40898591 3'AG 40898591 Downstream 49bp
chr15 40898639 40898639 1 + G A CESC 40898648 + 40898628 40898668 41 GAGGTGGGAATGAAAGAGTTCAGGTAAGTCTTTTGTGCAAA GAGGTGGGAATAAAAGAGTTCAGGTAAGTCTTTTGTGCAAA < 41bp 1 0.508498051757038 1 0.346201479434967 experiment 0.983003896485924 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KNL1 ENSG00000137812 CDS Human protein_coding chr15:40898648 chr15:40898639 nonsynonymous SNV 0.976 2 12 hm5C_associated_SNPs_18470 0 0 1 0 2 KNL1 chr15:40898650 5'GT 40898650 Upstream 12bp
chr1 231114978 231114978 1 + G C CESC 231114974 + 231114954 231114994 41 ATCGAATGCAACCAGGAGGCCAAAGAGTTGTACCGAGACTA ATCGAATGCAACCAGGAGGCCAAACAGTTGTACCGAGACTA < 41bp 1 0.347355912626582 1 0.130229413509369 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARV1 ENSG00000173409 CDS Human protein_coding chr1:231114974 chr1:231114978 nonsynonymous SNV 0.992 3 25 hm5C_associated_SNPs_18471 0 0 1 0 1 ARV1 chr1:231115025 5'GT 231115025 Upstream 48bp
chr1 32620245 32620245 1 + G T CESC 32620232 + 32620212 32620252 41 GACAATTATCGAATGAAGAGCTATAAGAACAATGCTCTAAA GACAATTATCGAATGAAGAGCTATAAGAACAATTCTCTAAA < 41bp 1 0.233516119722055 1 0.283635199069977 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620232 chr1:32620245 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_18472 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 57bp
chr1 32620245 32620245 1 + G T CESC 32620232 + 32620212 32620252 41 GACAATTATCGAATGAAGAGCTATAAGAACAATGCTCTAAA GACAATTATCGAATGAAGAGCTATAAGAACAATTCTCTAAA < 41bp 1 0.233516119722055 1 0.283635199069977 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620232 chr1:32620245 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_18472 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 78bp
chr1 32620245 32620245 1 + G T CESC 32620246 + 32620226 32620266 41 GAAGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGA GAAGAGCTATAAGAACAATTCTCTAAACCCTGAAGAAATGA < 41bp 1 0.450655094792346 1 0.280176311731339 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620246 chr1:32620245 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_18473 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 57bp
chr1 32620245 32620245 1 + G T CESC 32620246 + 32620226 32620266 41 GAAGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGA GAAGAGCTATAAGAACAATTCTCTAAACCCTGAAGAAATGA < 41bp 1 0.450655094792346 1 0.280176311731339 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620246 chr1:32620245 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_18473 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 78bp
chr1 32620245 32620245 1 + G T CESC 32620248 + 32620228 32620268 41 AGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGAGA AGAGCTATAAGAACAATTCTCTAAACCCTGAAGAAATGAGA < 41bp 1 0.373939714059137 1 0.260517299175262 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620248 chr1:32620245 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_18474 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 57bp
chr1 32620245 32620245 1 + G T CESC 32620248 + 32620228 32620268 41 AGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGAGA AGAGCTATAAGAACAATTCTCTAAACCCTGAAGAAATGAGA < 41bp 1 0.373939714059137 1 0.260517299175262 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620248 chr1:32620245 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_18474 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 78bp
chr1 32620245 32620245 1 + G T CESC 32620253 + 32620233 32620273 41 TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAG TATAAGAACAATTCTCTAAACCCTGAAGAAATGAGACGAAG < 41bp 1 0.182255059168143 1 0.100959688425064 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620253 chr1:32620245 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_18475 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 57bp
chr1 32620245 32620245 1 + G T CESC 32620253 + 32620233 32620273 41 TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAG TATAAGAACAATTCTCTAAACCCTGAAGAAATGAGACGAAG < 41bp 1 0.182255059168143 1 0.100959688425064 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620253 chr1:32620245 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_18475 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 78bp
chr1 32620245 32620245 1 + G T CESC 32620254 + 32620234 32620274 41 ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAGA ATAAGAACAATTCTCTAAACCCTGAAGAAATGAGACGAAGA < 41bp 1 0.212749328280878 1 0.228674471378326 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620254 chr1:32620245 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_18476 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 57bp
chr1 32620245 32620245 1 + G T CESC 32620254 + 32620234 32620274 41 ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAGA ATAAGAACAATTCTCTAAACCCTGAAGAAATGAGACGAAGA < 41bp 1 0.212749328280878 1 0.228674471378326 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620254 chr1:32620245 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_18476 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 78bp
chr5 131977957 131977957 1 + T G CESC 131977975 + 131977955 131977995 41 TCTGAATATGTGGAGAAATTCTACAGGATTAAAAAGAACAT TCGGAATATGTGGAGAAATTCTACAGGATTAAAAAGAACAT < 41bp 1 0.692133810003956 1 0.733688950538635 experiment 0.615732379992088 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131977975 chr5:131977957 synonymous SNV . 0 3 hm5C_associated_SNPs_18477 0 0 1 0 1 RAD50 chr5:131977870 3'AG 131977870 Downstream 88bp
chr14 102466695 102466695 1 + C T CESC 102466707 + 102466687 102466727 41 AAATCGATCAGATGAAGGAGCAACCCTGGGTTTCAGTACAG AAATCGATTAGATGAAGGAGCAACCCTGGGTTTCAGTACAG < 41bp 1 0.0429918650150708 1 0.209843844175339 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466707 chr14:102466695 stopgain 0.999 1 9 hm5C_associated_SNPs_18478 0 0 1 0 2 DYNC1H1 chr14:102466623 3'AG 102466623 Downstream 73bp
chr14 102466695 102466695 1 + C T CESC 102466707 + 102466687 102466727 41 AAATCGATCAGATGAAGGAGCAACCCTGGGTTTCAGTACAG AAATCGATTAGATGAAGGAGCAACCCTGGGTTTCAGTACAG < 41bp 1 0.0429918650150708 1 0.209843844175339 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466707 chr14:102466695 stopgain 0.999 1 9 hm5C_associated_SNPs_18478 0 0 1 0 2 DYNC1H1 chr14:102466736 5'GT 102466736 Upstream 42bp
chr16 1793357 1793357 1 + G A CESC 1793369 + 1793349 1793389 41 ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACG ACCTCCCTAAACGTGTTCCCCCTGGCTGACGGCACGGTACG < 41bp 1 0.127841647108522 1 0.231406599283218 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1793369 chr16:1793357 synonymous SNV . 0 9 hm5C_associated_SNPs_18479 0 0 1 0 2 MAPK8IP3 chr16:1793333 3'AG 1793333 Downstream 25bp
chr16 1793357 1793357 1 + G A CESC 1793369 + 1793349 1793389 41 ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACG ACCTCCCTAAACGTGTTCCCCCTGGCTGACGGCACGGTACG < 41bp 1 0.127841647108522 1 0.231406599283218 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1793369 chr16:1793357 synonymous SNV . 0 9 hm5C_associated_SNPs_18479 0 0 1 0 2 MAPK8IP3 chr16:1793336 3'AG 1793336 Downstream 22bp
chr7 127228576 127228576 1 + C G CESC 127228572 + 127228552 127228592 41 CATGGGCCTCACCGTGTCCGCGCTCTTTTCGCGGATCTTCG CATGGGCCTCACCGTGTCCGCGCTGTTTTCGCGGATCTTCG < 41bp 1 0.556335431404536 1 0.0658783614635468 experiment 0.887329137190927 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARF5 ENSG00000004059 CDS Human protein_coding chr7:127228572 chr7:127228576 synonymous SNV . 0 25 hm5C_associated_SNPs_18480 0 0 1 0 1 ARF5 chr7:127228619 5'GT 127228619 Upstream 44bp
chr7 127228576 127228576 1 + C G CESC 127228574 + 127228554 127228594 41 TGGGCCTCACCGTGTCCGCGCTCTTTTCGCGGATCTTCGGG TGGGCCTCACCGTGTCCGCGCTGTTTTCGCGGATCTTCGGG < 41bp 1 0.429596600984122 1 0.0720932185649872 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARF5 ENSG00000004059 CDS Human protein_coding chr7:127228574 chr7:127228576 synonymous SNV . 0 23 hm5C_associated_SNPs_18481 0 0 1 0 1 ARF5 chr7:127228619 5'GT 127228619 Upstream 44bp
chr6 52288785 52288785 1 + C A CESC 52288769 + 52288749 52288789 41 AGCCTTCCACAGAAGTCAGACGCTGAGCTACAGGAACGGCT AGCCTTCCACAGAAGTCAGACGCTGAGCTACAGGAAAGGCT < 41bp 1 0.239432906630563 1 0.430997788906097 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52288769 chr6:52288785 nonsynonymous SNV 0.988 2 37 hm5C_associated_SNPs_18482 0 0 1 0 2 EFHC1 chr6:52288744 3'AG 52288744 Downstream 42bp
chr6 52288785 52288785 1 + C A CESC 52288769 + 52288749 52288789 41 AGCCTTCCACAGAAGTCAGACGCTGAGCTACAGGAACGGCT AGCCTTCCACAGAAGTCAGACGCTGAGCTACAGGAAAGGCT < 41bp 1 0.239432906630563 1 0.430997788906097 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52288769 chr6:52288785 nonsynonymous SNV 0.988 2 37 hm5C_associated_SNPs_18482 0 0 1 0 2 EFHC1 chr6:52288879 5'GT 52288879 Upstream 95bp
chr4 79440596 79440596 1 + G C CESC 79440588 + 79440568 79440608 41 GGCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT GGCCTCCTTGGAGCACCACACCGAGATGCAGTTTTCTTTCT < 41bp 1 0.168293000408418 1 0.563862919807434 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440588 chr4:79440596 nonsynonymous SNV 0.999 3 29 hm5C_associated_SNPs_18486 0 0 1 0 1 FRAS1 chr4:79440635 5'GT 79440635 Upstream 40bp
chr4 79440596 79440596 1 + G C CESC 79440589 + 79440569 79440609 41 GCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT GCCTCCTTGGAGCACCACACCGAGATGCAGTTTTCTTTCTT < 41bp 1 0.438733827817335 1 0.671028017997742 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440589 chr4:79440596 nonsynonymous SNV 0.999 3 28 hm5C_associated_SNPs_18487 0 0 1 0 1 FRAS1 chr4:79440635 5'GT 79440635 Upstream 40bp
chr11 46895142 46895142 1 - C T CESC 46895143 - 46895123 46895163 41 ACACTGGGCTCTCCCCAAGGCGAGCAGACCTGAACGGCAGC ACACTGGGCTCTCCCCAAGGCAAGCAGACCTGAACGGCAGC < 41bp 1 0.167447506917791 1 0.347202301025391 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP4 ENSG00000134569 CDS Human protein_coding chr11:46895143 chr11:46895142 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_18489 0 0 1 0 1 LRP4 chr11:46895144 3'AG 46895144 Downstream 3bp
chr19 3434290 3434290 1 + G A CESC 3434306 + 3434286 3434326 41 ACTGGAACAGGACCCAACTTCTCCCTGGGGGAGCTGCAGGG ACTGAAACAGGACCCAACTTCTCCCTGGGGGAGCTGCAGGG < 41bp 1 0.381550454210911 1 0.880393624305725 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFIC ENSG00000141905 CDS Human protein_coding chr19:3434306 chr19:3434290 nonsynonymous SNV 0.995 4 5 hm5C_associated_SNPs_18497 0 0 1 0 1 NFIC chr19:3434275 3'AG 3434275 Downstream 16bp
chr13 111155758 111155758 1 + G T CESC 111155778 + 111155758 111155798 41 GAACACTGGACCCACTGGGGCGGTGGGCGACAGAGGCCCCA TAACACTGGACCCACTGGGGCGGTGGGCGACAGAGGCCCCA < 41bp 1 0.20704806054347 1 0.68088960647583 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111155778 chr13:111155758 synonymous SNV . 0 1 hm5C_associated_SNPs_18499 0 0 0 0 2 COL4A2 chr13:111155730 3'AG 111155730 Downstream 29bp
chr13 111155758 111155758 1 + G T CESC 111155778 + 111155758 111155798 41 GAACACTGGACCCACTGGGGCGGTGGGCGACAGAGGCCCCA TAACACTGGACCCACTGGGGCGGTGGGCGACAGAGGCCCCA < 41bp 1 0.20704806054347 1 0.68088960647583 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111155778 chr13:111155758 synonymous SNV . 0 1 hm5C_associated_SNPs_18499 0 0 0 0 2 COL4A2 chr13:111155828 5'GT 111155828 Upstream 71bp
chr16 15788044 15788044 1 + G A CESC 15788047 + 15788027 15788067 41 GACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCG GACGACTCCACCGGGGGAACCCCCCTCACACCTGCGGCCCG < 41bp 1 0.25535243024024 1 0.197886824607849 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDE1 ENSG00000072864 CDS Human protein_coding chr16:15788047 chr16:15788044 synonymous SNV . 0 18 hm5C_associated_SNPs_18500 1 0 1 0 2 NDE1 chr16:15788022 3'AG 15788022 Downstream 23bp
chr16 15788044 15788044 1 + G A CESC 15788047 + 15788027 15788067 41 GACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCG GACGACTCCACCGGGGGAACCCCCCTCACACCTGCGGCCCG < 41bp 1 0.25535243024024 1 0.197886824607849 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDE1 ENSG00000072864 CDS Human protein_coding chr16:15788047 chr16:15788044 synonymous SNV . 0 18 hm5C_associated_SNPs_18500 1 0 1 0 2 NDE1 chr16:15788113 5'GT 15788113 Upstream 70bp
chr20 61574475 61574475 1 + G C CESC 61574466 + 61574446 61574486 41 AAAGGTCAGATTCAGGAGGCCATCGCCTTGATCAACAGCCT AAAGGTCAGATTCAGGAGGCCATCGCCTTCATCAACAGCCT < 41bp 1 0.201437654215425 1 0.0525189638137817 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GID8 ENSG00000101193 CDS Human protein_coding chr20:61574466 chr20:61574475 nonsynonymous SNV 0.569 4 30 hm5C_associated_SNPs_18501 0 0 1 0 1 GID8 chr20:61574535 5'GT 61574535 Upstream 61bp
chr11 111948979 111948979 1 + A C CESC 111948975 + 111948955 111948995 41 ATATGTGGAAAATAAGAGAACTGGAAAAACAGATGGAAGAT ATATGTGGAAAATAAGAGAACTGGCAAAACAGATGGAAGAT < 41bp 1 0.446301977135986 1 0.264638245105743 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C11orf57 ENSG00000150776 CDS Human protein_coding chr11:111948975 chr11:111948979 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_18502 0 0 1 0 2 C11orf57 chr11:111948939 3'AG 111948939 Downstream 41bp
chr11 111948979 111948979 1 + A C CESC 111948975 + 111948955 111948995 41 ATATGTGGAAAATAAGAGAACTGGAAAAACAGATGGAAGAT ATATGTGGAAAATAAGAGAACTGGCAAAACAGATGGAAGAT < 41bp 1 0.446301977135986 1 0.264638245105743 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C11orf57 ENSG00000150776 CDS Human protein_coding chr11:111948975 chr11:111948979 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_18502 0 0 1 0 2 C11orf57 chr11:111949039 5'GT 111949039 Upstream 61bp
chr15 52188684 52188684 1 + C T CESC 52188695 + 52188675 52188715 41 GAAATGTTTCAGTCTTGCAGCCACCCGGAGCAATGACCCTG GAAATGTTTTAGTCTTGCAGCCACCCGGAGCAATGACCCTG < 41bp 1 0.0901589625523675 1 0.0531454980373383 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMOD3 ENSG00000138594 CDS Human protein_coding chr15:52188695 chr15:52188684 synonymous SNV . 0 10 hm5C_associated_SNPs_18503 0 0 1 1 2 TMOD3 chr15:52188616 3'AG 52188616 Downstream 69bp
chr15 52188684 52188684 1 + C T CESC 52188695 + 52188675 52188715 41 GAAATGTTTCAGTCTTGCAGCCACCCGGAGCAATGACCCTG GAAATGTTTTAGTCTTGCAGCCACCCGGAGCAATGACCCTG < 41bp 1 0.0901589625523675 1 0.0531454980373383 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMOD3 ENSG00000138594 CDS Human protein_coding chr15:52188695 chr15:52188684 synonymous SNV . 0 10 hm5C_associated_SNPs_18503 0 0 1 1 2 TMOD3 chr15:52188723 5'GT 52188723 Upstream 40bp
chr10 46918241 46918241 1 + G C CESC 46918258 + 46918238 46918278 41 TCAGAGATCTTCCTCCGAGACAGCCTCAGAGGGTGAACAGT TCACAGATCTTCCTCCGAGACAGCCTCAGAGGGTGAACAGT < 41bp 1 0.387296713627875 1 0.0846152305603027 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM35BP ENSG00000165874 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:46918258 chr10:46918241 . . 0 4 hm5C_associated_SNPs_18504 0 0 0 0 1 FAM35BP chr10:46918169 3'AG 46918169 Downstream 73bp
chr2 227729838 227729838 1 + C G CESC 227729840 + 227729820 227729860 41 GAGCTGTGCTGTAGGTTTCTCAGGTAAGGGAGACAAAATTT GAGCTGTGCTGTAGGTTTGTCAGGTAAGGGAGACAAAATTT < 41bp 1 0.670820479051039 1 0.487635403871536 experiment 0.658359041897921 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RHBDD1 ENSG00000144468 CDS Human protein_coding chr2:227729840 chr2:227729838 nonsynonymous SNV 0.994 4 19 hm5C_associated_SNPs_18505 0 0 1 0 1 RHBDD1 chr2:227729842 5'GT 227729842 Upstream 5bp
chr1 182827319 182827319 1 + C T CESC 182827338 + 182827318 182827358 41 CCATCTTGGAGTGGTTGAAGCTTACTCCGGACTTACAAAGA CTATCTTGGAGTGGTTGAAGCTTACTCCGGACTTACAAAGA < 41bp 1 0.190158391359216 1 0.176957339048386 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182827338 chr1:182827319 nonsynonymous SNV 0.998 4 2 hm5C_associated_SNPs_18506 0 0 1 0 2 DHX9 chr1:182827239 3'AG 182827239 Downstream 81bp
chr1 182827319 182827319 1 + C T CESC 182827338 + 182827318 182827358 41 CCATCTTGGAGTGGTTGAAGCTTACTCCGGACTTACAAAGA CTATCTTGGAGTGGTTGAAGCTTACTCCGGACTTACAAAGA < 41bp 1 0.190158391359216 1 0.176957339048386 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182827338 chr1:182827319 nonsynonymous SNV 0.998 4 2 hm5C_associated_SNPs_18506 0 0 1 0 2 DHX9 chr1:182827375 5'GT 182827375 Upstream 57bp
chr5 177565208 177565208 1 + G C CESC 177565214 + 177565194 177565234 41 GTGAGCGGAGCCTGGAGGAGCTGCTGCACTACGTGGGCCAG GTGAGCGGAGCCTGCAGGAGCTGCTGCACTACGTGGGCCAG < 41bp 1 0.69271741081808 1 0.211882799863815 experiment 0.61456517836384 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RMND5B ENSG00000145916 CDS Human protein_coding chr5:177565214 chr5:177565208 nonsynonymous SNV 0.997 1 15 hm5C_associated_SNPs_18507 0 0 1 0 1 RMND5B chr5:177565259 5'GT 177565259 Upstream 52bp
chr8 22037970 22037970 1 + C T CESC 22037952 + 22037932 22037972 41 ACCCCAATGGCTACTCTGCTCACATGCACTGCGTGTGGCGC ACCCCAATGGCTACTCTGCTCACATGCACTGCGTGTGGTGC < 41bp 1 0.357374364209623 1 0.0936912596225739 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037952 chr8:22037970 nonsynonymous SNV 0.993 3 39 hm5C_associated_SNPs_18508 0 0 1 1 2 BMP1 chr8:22037881 3'AG 22037881 Downstream 90bp
chr8 22037970 22037970 1 + C T CESC 22037952 + 22037932 22037972 41 ACCCCAATGGCTACTCTGCTCACATGCACTGCGTGTGGCGC ACCCCAATGGCTACTCTGCTCACATGCACTGCGTGTGGTGC < 41bp 1 0.357374364209623 1 0.0936912596225739 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037952 chr8:22037970 nonsynonymous SNV 0.993 3 39 hm5C_associated_SNPs_18508 0 0 1 1 2 BMP1 chr8:22037996 5'GT 22037996 Upstream 27bp
chr1 3342249 3342249 1 + G A CESC 3342250 + 3342230 3342270 41 AAGTGCCACCTGTGCAACCGCTGCTTCGGGCAGCAGACCAA AAGTGCCACCTGTGCAACCACTGCTTCGGGCAGCAGACCAA < 41bp 1 0.356057787814836 1 0.326640665531158 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3342250 chr1:3342249 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_18509 0 0 0 0 1 PRDM16 chr1:3342314 5'GT 3342314 Upstream 66bp
chr19 50733876 50733876 1 + C G CESC 50733861 + 50733841 50733881 41 TTCTACCAGCTGCTGGGGGGCGCTGGAGAGCAGCTCAAAGG TTCTACCAGCTGCTGGGGGGCGCTGGAGAGCAGCTGAAAGG < 41bp 1 0.268221298450225 1 0.475104451179504 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50733861 chr19:50733876 synonymous SNV . 0 36 hm5C_associated_SNPs_18510 0 0 1 0 2 MYH14 chr19:50733782 3'AG 50733782 Downstream 95bp
chr19 50733876 50733876 1 + C G CESC 50733861 + 50733841 50733881 41 TTCTACCAGCTGCTGGGGGGCGCTGGAGAGCAGCTCAAAGG TTCTACCAGCTGCTGGGGGGCGCTGGAGAGCAGCTGAAAGG < 41bp 1 0.268221298450225 1 0.475104451179504 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50733861 chr19:50733876 synonymous SNV . 0 36 hm5C_associated_SNPs_18510 0 0 1 0 2 MYH14 chr19:50733880 5'GT 50733880 Upstream 5bp
chr7 75933350 75933350 1 + G A CESC 75933337 + 75933317 75933357 41 GACCCCACCCAAGTTTCCTCCTCCCTGTCCCCTGAGGGCAC GACCCCACCCAAGTTTCCTCCTCCCTGTCCCCTAAGGGCAC < 41bp 1 0.434346053238089 1 0.714993238449097 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933337 chr7:75933350 nonsynonymous SNV 0.998 3 34 hm5C_associated_SNPs_18511 0 0 1 0 1 HSPB1 chr7:75933301 3'AG 75933301 Downstream 50bp
chr5 102262314 102262314 1 + G A CESC 102262299 + 102262279 102262319 41 AAATCTTTAGGTGTTGGATTCAGAGTTGGAGGAGAGACTGG AAATCTTTAGGTGTTGGATTCAGAGTTGGAGGAGAAACTGG < 41bp 1 0.345233132854403 1 0.945936799049377 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAM ENSG00000145730 CDS Human protein_coding chr5:102262299 chr5:102262314 nonsynonymous SNV . 0 36 hm5C_associated_SNPs_18516 0 0 1 0 2 PAM chr5:102262289 3'AG 102262289 Downstream 26bp
chr5 102262314 102262314 1 + G A CESC 102262299 + 102262279 102262319 41 AAATCTTTAGGTGTTGGATTCAGAGTTGGAGGAGAGACTGG AAATCTTTAGGTGTTGGATTCAGAGTTGGAGGAGAAACTGG < 41bp 1 0.345233132854403 1 0.945936799049377 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAM ENSG00000145730 CDS Human protein_coding chr5:102262299 chr5:102262314 nonsynonymous SNV . 0 36 hm5C_associated_SNPs_18516 0 0 1 0 2 PAM chr5:102262372 5'GT 102262372 Upstream 59bp
chr14 61201641 61201641 1 + C T CESC 61201633 + 61201613 61201653 41 CACCAAATATCGGAACCCCTCCTTGAAGCTGATGGTGAATG CACCAAATATCGGAACCCCTCCTTGAAGTTGATGGTGAATG < 41bp 1 0.121693707495096 1 0.158790409564972 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61201633 chr14:61201641 synonymous SNV . 0 29 hm5C_associated_SNPs_18518 0 0 1 0 1 MNAT1 chr14:61201669 5'GT 61201669 Upstream 29bp
chr10 70506953 70506953 1 + G A CESC 70506935 + 70506915 70506955 41 CAGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAG CAGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAAAG < 41bp 1 0.133947024210604 1 0.219482392072678 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506935 chr10:70506953 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_18521 0 0 1 3 2 CCAR1 chr10:70506918 3'AG 70506918 Downstream 36bp
chr10 70506953 70506953 1 + G A CESC 70506935 + 70506915 70506955 41 CAGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAG CAGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAAAG < 41bp 1 0.133947024210604 1 0.219482392072678 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506935 chr10:70506953 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_18521 0 0 1 3 2 CCAR1 chr10:70507032 5'GT 70507032 Upstream 80bp
chr10 70506953 70506953 1 + G A CESC 70506936 + 70506916 70506956 41 AGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGT AGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAAAGT < 41bp 1 0.168747511264222 1 0.127678543329239 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506936 chr10:70506953 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_18522 0 0 1 3 2 CCAR1 chr10:70506918 3'AG 70506918 Downstream 36bp
chr10 70506953 70506953 1 + G A CESC 70506936 + 70506916 70506956 41 AGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGT AGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAAAGT < 41bp 1 0.168747511264222 1 0.127678543329239 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506936 chr10:70506953 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_18522 0 0 1 3 2 CCAR1 chr10:70507032 5'GT 70507032 Upstream 80bp
chr10 70506953 70506953 1 + G A CESC 70506937 + 70506917 70506957 41 GTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGTA GTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAAAGTA < 41bp 1 0.520189509124176 1 0.278316110372543 experiment 0.959620981751648 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506937 chr10:70506953 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_18523 0 0 1 3 2 CCAR1 chr10:70506918 3'AG 70506918 Downstream 36bp
chr10 70506953 70506953 1 + G A CESC 70506937 + 70506917 70506957 41 GTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGTA GTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAAAGTA < 41bp 1 0.520189509124176 1 0.278316110372543 experiment 0.959620981751648 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506937 chr10:70506953 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_18523 0 0 1 3 2 CCAR1 chr10:70507032 5'GT 70507032 Upstream 80bp
chr10 70506953 70506953 1 + G A CESC 70506938 + 70506918 70506958 41 TGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGTAT TGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAAAGTAT < 41bp 1 0.373345607275869 1 0.307306945323944 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506938 chr10:70506953 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_18524 0 0 1 3 2 CCAR1 chr10:70506918 3'AG 70506918 Downstream 36bp
chr10 70506953 70506953 1 + G A CESC 70506938 + 70506918 70506958 41 TGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGTAT TGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAAAGTAT < 41bp 1 0.373345607275869 1 0.307306945323944 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506938 chr10:70506953 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_18524 0 0 1 3 2 CCAR1 chr10:70507032 5'GT 70507032 Upstream 80bp
chr10 72434400 72434400 1 + G A CESC 72434407 + 72434387 72434427 41 TCTCCCACGTGGTGTCTGGCCCAGCAGCAGCCTCTGCAGGG TCTCCCACGTGGTATCTGGCCCAGCAGCAGCCTCTGCAGGG < 41bp 1 0.153063544710232 1 0.128694891929626 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72434407 chr10:72434400 synonymous SNV . 0 14 hm5C_associated_SNPs_18525 0 0 0 0 1 ADAMTS14 chr10:72434312 3'AG 72434312 Downstream 89bp
chr10 72434400 72434400 1 + G A CESC 72434411 + 72434391 72434431 41 CCACGTGGTGTCTGGCCCAGCAGCAGCCTCTGCAGGGAGCA CCACGTGGTATCTGGCCCAGCAGCAGCCTCTGCAGGGAGCA < 41bp 1 0.696017286487826 1 0.59466826915741 experiment 0.607965427024349 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72434411 chr10:72434400 synonymous SNV . 0 10 hm5C_associated_SNPs_18526 0 0 0 0 1 ADAMTS14 chr10:72434312 3'AG 72434312 Downstream 89bp
chr2 232577224 232577224 1 + G A CESC 232577210 + 232577190 232577230 41 GTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAGGTGG GTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATAAGGTGG < 41bp 1 0.442358306951131 1 0.555986225605011 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232577210 chr2:232577224 nonsynonymous SNV 0.996 1 35 hm5C_associated_SNPs_18533 0 0 1 0 2 PTMA chr2:232577153 3'AG 232577153 Downstream 72bp
chr2 232577224 232577224 1 + G A CESC 232577210 + 232577190 232577230 41 GTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAGGTGG GTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATAAGGTGG < 41bp 1 0.442358306951131 1 0.555986225605011 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232577210 chr2:232577224 nonsynonymous SNV 0.996 1 35 hm5C_associated_SNPs_18533 0 0 1 0 2 PTMA chr2:232577226 5'GT 232577226 Upstream 3bp
chrX 41201855 41201855 1 + C G CESC 41201835 + 41201815 41201855 41 AAATTTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATC AAATTTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATG < 41bp 1 0.273945024349857 1 0.165093153715134 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201835 chrX:41201855 stopgain 1.000 0 41 hm5C_associated_SNPs_18535 0 0 1 0 1 DDX3X chrX:41201906 5'GT 41201906 Upstream 52bp
chrX 41201855 41201855 1 + C G CESC 41201839 + 41201819 41201859 41 TTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATCAGAT TTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATGAGAT < 41bp 1 0.684480134757095 1 0.238089740276337 experiment 0.63103973048581 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201839 chrX:41201855 stopgain 1.000 0 37 hm5C_associated_SNPs_18536 0 0 1 0 1 DDX3X chrX:41201906 5'GT 41201906 Upstream 52bp
chrX 41201855 41201855 1 + C G CESC 41201850 + 41201830 41201870 41 GGAAACAGTCGCTGGTGTGACAAATCAGATGAAGATGATTG GGAAACAGTCGCTGGTGTGACAAATGAGATGAAGATGATTG < 41bp 1 0.404511788182126 1 0.486346691846848 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201850 chrX:41201855 stopgain 1.000 0 26 hm5C_associated_SNPs_18537 0 0 1 0 1 DDX3X chrX:41201906 5'GT 41201906 Upstream 52bp
chr19 1453477 1453477 1 + C G CESC 1453489 + 1453469 1453509 41 TCCAGCCGCCCACCCTGGGCCCGGAGCCTGCCGCCCGGACC TCCAGCCGGCCACCCTGGGCCCGGAGCCTGCCGCCCGGACC < 41bp 1 0.424040593175202 1 0.56485503911972 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453489 chr19:1453477 nonsynonymous SNV 0.009 3 9 hm5C_associated_SNPs_18541 0 0 0 0 1 APC2 chr19:1453430 3'AG 1453430 Downstream 48bp
chr17 41348575 41348575 1 + G C CESC 41348556 + 41348536 41348576 41 CCTTTAATAGAGAAGCCAGGCTTGGGGCAGATAGAGGAAGA CCTTTAATAGAGAAGCCAGGCTTGGGGCAGATAGAGGAACA < 41bp 1 0.556906710071346 1 0.106635183095932 experiment 0.886186579857307 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41348556 chr17:41348575 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_18542 0 0 1 0 2 NBR1 chr17:41348498 3'AG 41348498 Downstream 78bp
chr17 41348575 41348575 1 + G C CESC 41348556 + 41348536 41348576 41 CCTTTAATAGAGAAGCCAGGCTTGGGGCAGATAGAGGAAGA CCTTTAATAGAGAAGCCAGGCTTGGGGCAGATAGAGGAACA < 41bp 1 0.556906710071346 1 0.106635183095932 experiment 0.886186579857307 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41348556 chr17:41348575 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_18542 0 0 1 0 2 NBR1 chr17:41348608 5'GT 41348608 Upstream 34bp
chr17 41348575 41348575 1 + G C CESC 41348563 + 41348543 41348583 41 TAGAGAAGCCAGGCTTGGGGCAGATAGAGGAAGAGAATGAA TAGAGAAGCCAGGCTTGGGGCAGATAGAGGAACAGAATGAA < 41bp 1 0.320491018153826 1 0.380658805370331 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41348563 chr17:41348575 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_18543 0 0 1 0 2 NBR1 chr17:41348498 3'AG 41348498 Downstream 78bp
chr17 41348575 41348575 1 + G C CESC 41348563 + 41348543 41348583 41 TAGAGAAGCCAGGCTTGGGGCAGATAGAGGAAGAGAATGAA TAGAGAAGCCAGGCTTGGGGCAGATAGAGGAACAGAATGAA < 41bp 1 0.320491018153826 1 0.380658805370331 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41348563 chr17:41348575 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_18543 0 0 1 0 2 NBR1 chr17:41348608 5'GT 41348608 Upstream 34bp
chr9 129458226 129458226 1 + C T CESC 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGCCCCTACGGCAGCAGCGACCTCTTCCAGCAGGG < 41bp 1 0.555231688283655 1 0.530311763286591 experiment 0.88953662343269 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458226 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_18544 0 0 0 0 2 LMX1B chr9:129458261 5'GT 129458261 Upstream 36bp
chr9 129458226 129458226 1 + C T CESC 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGCCCCTACGGCAGCAGCGACCTCTTCCAGCAGGG < 41bp 1 0.555231688283655 1 0.530311763286591 experiment 0.88953662343269 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458226 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_18544 0 0 0 0 2 LMX1B chr9:129458282 5'GT 129458282 Upstream 57bp
chr9 97767829 97767829 1 + G C CESC 97767847 + 97767827 97767867 41 ACGAAATGGATTGGAGTGAACCGGAGACCCCGAAAACGGAA ACCAAATGGATTGGAGTGAACCGGAGACCCCGAAAACGGAA < 41bp 1 0.672876189824563 1 0.591561257839203 experiment 0.654247620350873 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf3 ENSG00000148120 CDS Human protein_coding chr9:97767847 chr9:97767829 synonymous SNV . 0 3 hm5C_associated_SNPs_18545 0 0 1 0 2 C9orf3 chr9:97767824 3'AG 97767824 Downstream 6bp
chr9 97767829 97767829 1 + G C CESC 97767847 + 97767827 97767867 41 ACGAAATGGATTGGAGTGAACCGGAGACCCCGAAAACGGAA ACCAAATGGATTGGAGTGAACCGGAGACCCCGAAAACGGAA < 41bp 1 0.672876189824563 1 0.591561257839203 experiment 0.654247620350873 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf3 ENSG00000148120 CDS Human protein_coding chr9:97767847 chr9:97767829 synonymous SNV . 0 3 hm5C_associated_SNPs_18545 0 0 1 0 2 C9orf3 chr9:97767898 5'GT 97767898 Upstream 70bp
chr12 22812005 22812005 1 + C T CESC 22811993 + 22811973 22812013 41 ATCCATGCTATTCATGCACACAATGGCTGGATCCCCAAATC ATCCATGCTATTCATGCACACAATGGCTGGATTCCCAAATC < 41bp 1 0.426947932070911 1 0.314227432012558 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ETNK1 ENSG00000139163 CDS Human protein_coding chr12:22811993 chr12:22812005 synonymous SNV . 0 33 hm5C_associated_SNPs_18565 0 0 1 0 2 ETNK1 chr12:22811948 3'AG 22811948 Downstream 58bp
chr12 22812005 22812005 1 + C T CESC 22811993 + 22811973 22812013 41 ATCCATGCTATTCATGCACACAATGGCTGGATCCCCAAATC ATCCATGCTATTCATGCACACAATGGCTGGATTCCCAAATC < 41bp 1 0.426947932070911 1 0.314227432012558 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ETNK1 ENSG00000139163 CDS Human protein_coding chr12:22811993 chr12:22812005 synonymous SNV . 0 33 hm5C_associated_SNPs_18565 0 0 1 0 2 ETNK1 chr12:22812088 5'GT 22812088 Upstream 84bp
chr1 29068970 29068970 1 + C G CESC 29068982 + 29068962 29069002 41 CAGTCCCTCCATTGGCTTCTCCTATTCTTTGGGTGAAGCTG CAGTCCCTGCATTGGCTTCTCCTATTCTTTGGGTGAAGCTG < 41bp 1 0.0600790004120553 1 0.141016393899918 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29068982 chr1:29068970 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_18566 0 0 1 0 1 YTHDF2 chr1:29068915 3'AG 29068915 Downstream 56bp
chr2 32773058 32773058 1 + G T CESC 32773043 + 32773023 32773063 41 TGGAACAAGCCTTAACTAAGCAAAGGCTGGAAGAGGAACAT TGGAACAAGCCTTAACTAAGCAAAGGCTGGAAGAGTAACAT < 41bp 1 0.165938189849673 1 0.623045742511749 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773043 chr2:32773058 stopgain 0.978 1 36 hm5C_associated_SNPs_18568 0 0 1 0 1 BIRC6 chr2:32773081 5'GT 32773081 Upstream 24bp
chr12 124239052 124239052 1 + T G CESC 124239064 + 124239044 124239084 41 CTCCTACCTGAGGCTCTGGGCGCTTAGCCTGGCTCACGCAC CTCCTACCGGAGGCTCTGGGCGCTTAGCCTGGCTCACGCAC < 41bp 1 0.315940587381828 1 0.264851450920105 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124239064 chr12:124239052 nonsynonymous SNV 1.000 5 9 hm5C_associated_SNPs_18571 0 0 1 0 2 ATP6V0A2 chr12:124238967 3'AG 124238967 Downstream 86bp
chr12 124239052 124239052 1 + T G CESC 124239064 + 124239044 124239084 41 CTCCTACCTGAGGCTCTGGGCGCTTAGCCTGGCTCACGCAC CTCCTACCGGAGGCTCTGGGCGCTTAGCCTGGCTCACGCAC < 41bp 1 0.315940587381828 1 0.264851450920105 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124239064 chr12:124239052 nonsynonymous SNV 1.000 5 9 hm5C_associated_SNPs_18571 0 0 1 0 2 ATP6V0A2 chr12:124239084 5'GT 124239084 Upstream 33bp
chr1 46739326 46739326 1 + C T CESC 46739322 + 46739302 46739342 41 TGCTGGTCCTGGATTATATTCTGGCGGTGACCCGAAGCCGT TGCTGGTCCTGGATTATATTCTGGTGGTGACCCGAAGCCGT < 41bp 1 0.753262476368285 1 0.559563517570496 experiment 0.49347504726343 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739322 chr1:46739326 nonsynonymous SNV 0.987 4 25 hm5C_associated_SNPs_18572 0 0 1 0 2 RAD54L chr1:46739296 3'AG 46739296 Downstream 31bp
chr1 46739326 46739326 1 + C T CESC 46739322 + 46739302 46739342 41 TGCTGGTCCTGGATTATATTCTGGCGGTGACCCGAAGCCGT TGCTGGTCCTGGATTATATTCTGGTGGTGACCCGAAGCCGT < 41bp 1 0.753262476368285 1 0.559563517570496 experiment 0.49347504726343 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739322 chr1:46739326 nonsynonymous SNV 0.987 4 25 hm5C_associated_SNPs_18572 0 0 1 0 2 RAD54L chr1:46739419 5'GT 46739419 Upstream 94bp
chr1 201163368 201163368 1 + G C CESC 201163360 + 201163340 201163380 41 CCCTGAAGGCTGCAGCACGCCGGACTTTGAGCAGAAGCCCG CCCTGAAGGCTGCAGCACGCCGGACTTTCAGCAGAAGCCCG < 41bp 1 0.297826217490513 1 0.301532089710236 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201163360 chr1:201163368 nonsynonymous SNV 0.963 0 29 hm5C_associated_SNPs_18573 0 0 0 0 1 IGFN1 chr1:201163282 3'AG 201163282 Downstream 87bp
chr3 9976232 9976232 1 + C G CESC 9976249 + 9976229 9976269 41 AGTCTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGC AGTGTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGC < 41bp 1 0.528939659129421 1 0.232689678668976 experiment 0.942120681741159 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976249 chr3:9976232 nonsynonymous SNV 0.596 1 4 hm5C_associated_SNPs_18574 0 0 1 0 1 CRELD1 chr3:9976296 5'GT 9976296 Upstream 65bp
chr3 9976232 9976232 1 + C G CESC 9976251 + 9976231 9976271 41 TCTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGCCG TGTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGCCG < 41bp 1 0.032879649094766 1 0.0441755652427673 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976251 chr3:9976232 nonsynonymous SNV 0.596 1 2 hm5C_associated_SNPs_18575 0 0 1 0 1 CRELD1 chr3:9976296 5'GT 9976296 Upstream 65bp
chr3 9976232 9976232 1 + C G CESC 9976252 + 9976232 9976272 41 CTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGCCGG GTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGCCGG < 41bp 1 0.223566961055853 1 0.216767311096191 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976252 chr3:9976232 nonsynonymous SNV 0.596 1 1 hm5C_associated_SNPs_18576 0 0 1 0 1 CRELD1 chr3:9976296 5'GT 9976296 Upstream 65bp
chr1 55452073 55452073 1 + G C CESC 55452081 + 55452061 55452101 41 CACCTCTCCAGAGACCTGTACTACCTCACTGTGGAGTCCTC CACCTCTCCAGACACCTGTACTACCTCACTGTGGAGTCCTC < 41bp 1 0.0955609350115326 1 0.0851924419403076 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM61 ENSG00000143001 CDS Human protein_coding chr1:55452081 chr1:55452073 nonsynonymous SNV 0.997 1 13 hm5C_associated_SNPs_18577 0 0 0 0 1 TMEM61 chr1:55452119 5'GT 55452119 Upstream 47bp
chr2 189458715 189458715 1 + G A CESC 189458701 + 189458681 189458721 41 GGGACTAACTCTTGAAGGCACAGTATTTTGTCTCGACCCGT GGGACTAACTCTTGAAGGCACAGTATTTTGTCTCAACCCGT < 41bp 1 0.577417016573163 1 0.133650541305542 experiment 0.845165966853675 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GULP1 ENSG00000144366 CDS Human protein_coding chr2:189458701 chr2:189458715 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_18578 0 0 1 0 1 GULP1 chr2:189458667 3'AG 189458667 Downstream 49bp
chr2 189458715 189458715 1 + G A CESC 189458714 + 189458694 189458734 41 GAAGGCACAGTATTTTGTCTCGACCCGTTAGACAGTAGGTG GAAGGCACAGTATTTTGTCTCAACCCGTTAGACAGTAGGTG < 41bp 1 0.285880111501969 1 0.221132904291153 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GULP1 ENSG00000144366 CDS Human protein_coding chr2:189458714 chr2:189458715 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_18579 0 0 1 0 1 GULP1 chr2:189458667 3'AG 189458667 Downstream 49bp
chr6 109763769 109763769 1 + G A CESC 109763767 + 109763747 109763787 41 TCCATGCCGAATACAATCGACAGAAGGACATCTACCTAGCA TCCATGCCGAATACAATCGACAAAAGGACATCTACCTAGCA < 41bp 1 0.385875990577089 1 0.366760075092316 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109763767 chr6:109763769 synonymous SNV . 0 23 hm5C_associated_SNPs_18589 0 0 1 0 2 SMPD2 chr6:109763746 3'AG 109763746 Downstream 24bp
chr6 109763769 109763769 1 + G A CESC 109763767 + 109763747 109763787 41 TCCATGCCGAATACAATCGACAGAAGGACATCTACCTAGCA TCCATGCCGAATACAATCGACAAAAGGACATCTACCTAGCA < 41bp 1 0.385875990577089 1 0.366760075092316 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109763767 chr6:109763769 synonymous SNV . 0 23 hm5C_associated_SNPs_18589 0 0 1 0 2 SMPD2 chr6:109763828 5'GT 109763828 Upstream 60bp
chr3 126708574 126708574 1 + G A CESC 126708579 + 126708559 126708599 41 TCCTGCTACCGTGGTGAGGGCAAGCTCTCCCTGCCGTGGCT TCCTGCTACCGTGGTAAGGGCAAGCTCTCCCTGCCGTGGCT < 41bp 1 0.119524476617446 1 0.360177606344223 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126708579 chr3:126708574 nonsynonymous SNV 0.389 1 16 hm5C_associated_SNPs_18590 0 0 1 0 1 PLXNA1 chr3:126708630 5'GT 126708630 Upstream 57bp
chr19 40718780 40718780 1 + G A CESC 40718786 + 40718766 40718806 41 GGACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTG GGACATGGAGCCGCAGTGGGCCCCCAAAGAAGGAAGAACTG < 41bp 1 0.0643226417011435 1 0.114830166101456 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718786 chr19:40718780 nonsynonymous SNV 0.982 0 15 hm5C_associated_SNPs_18591 0 0 1 0 1 MAP3K10 chr19:40718712 3'AG 40718712 Downstream 69bp
chr19 40718780 40718780 1 + G A CESC 40718787 + 40718767 40718807 41 GACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGG GACATGGAGCCGCAGTGGGCCCCCAAAGAAGGAAGAACTGG < 41bp 1 0.165976144963392 1 0.242102354764938 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718787 chr19:40718780 nonsynonymous SNV 0.982 0 14 hm5C_associated_SNPs_18592 0 0 1 0 1 MAP3K10 chr19:40718712 3'AG 40718712 Downstream 69bp
chr19 40718780 40718780 1 + G A CESC 40718788 + 40718768 40718808 41 ACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGT ACATGGAGCCGCAGTGGGCCCCCAAAGAAGGAAGAACTGGT < 41bp 1 0.171099406189244 1 0.490238159894943 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718788 chr19:40718780 nonsynonymous SNV 0.982 0 13 hm5C_associated_SNPs_18593 0 0 1 0 1 MAP3K10 chr19:40718712 3'AG 40718712 Downstream 69bp
chr19 40718780 40718780 1 + G A CESC 40718789 + 40718769 40718809 41 CATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGTC CATGGAGCCGCAGTGGGCCCCCAAAGAAGGAAGAACTGGTC < 41bp 1 0.152316201767681 1 0.677771687507629 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718789 chr19:40718780 nonsynonymous SNV 0.982 0 12 hm5C_associated_SNPs_18594 0 0 1 0 1 MAP3K10 chr19:40718712 3'AG 40718712 Downstream 69bp
chr19 40718780 40718780 1 + G A CESC 40718790 + 40718770 40718810 41 ATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGTCG ATGGAGCCGCAGTGGGCCCCCAAAGAAGGAAGAACTGGTCG < 41bp 1 0.318076269751557 1 0.806738495826721 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718790 chr19:40718780 nonsynonymous SNV 0.982 0 11 hm5C_associated_SNPs_18595 0 0 1 0 1 MAP3K10 chr19:40718712 3'AG 40718712 Downstream 69bp
chr19 14040251 14040251 1 + G A CESC 14040234 + 14040214 14040254 41 CTCAGTGTGCTGGCGTTTGACCAAGAGCGTCTGGAGCGGAA CTCAGTGTGCTGGCGTTTGACCAAGAGCGTCTGGAGCAGAA < 41bp 1 0.390043214649329 1 0.593384206295013 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14040234 chr19:14040251 nonsynonymous SNV 0.997 3 38 hm5C_associated_SNPs_18596 0 0 0 0 2 CC2D1A chr19:14040192 3'AG 14040192 Downstream 60bp
chr19 14040251 14040251 1 + G A CESC 14040234 + 14040214 14040254 41 CTCAGTGTGCTGGCGTTTGACCAAGAGCGTCTGGAGCGGAA CTCAGTGTGCTGGCGTTTGACCAAGAGCGTCTGGAGCAGAA < 41bp 1 0.390043214649329 1 0.593384206295013 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14040234 chr19:14040251 nonsynonymous SNV 0.997 3 38 hm5C_associated_SNPs_18596 0 0 0 0 2 CC2D1A chr19:14040255 5'GT 14040255 Upstream 5bp
chr22 31266626 31266626 1 + A T CESC 31266632 + 31266612 31266652 41 GAAGGTGGTGAATGAGCGGGCCACCCTCTTCCGCATCACAT GAAGGTGGTGAATGTGCGGGCCACCCTCTTCCGCATCACAT < 41bp 1 0.0465415080975144 1 0.0910769104957581 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OSBP2 ENSG00000184792 CDS Human protein_coding chr22:31266632 chr22:31266626 nonsynonymous SNV 0.934 4 15 hm5C_associated_SNPs_18613 0 0 0 0 1 OSBP2 chr22:31266669 5'GT 31266669 Upstream 44bp
chr5 176016579 176016579 1 + G A CESC 176016578 + 176016558 176016598 41 GCGGCTGCAGTTCTCCACACCGAAGGAGGAGGTGGGCGCCA GCGGCTGCAGTTCTCCACACCAAAGGAGGAGGTGGGCGCCA < 41bp 1 0.488125530523755 1 0.698651313781738 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176016578 chr5:176016579 synonymous SNV . 0 22 hm5C_associated_SNPs_18614 0 0 0 0 2 CDHR2 chr5:176016529 3'AG 176016529 Downstream 51bp
chr5 176016579 176016579 1 + G A CESC 176016578 + 176016558 176016598 41 GCGGCTGCAGTTCTCCACACCGAAGGAGGAGGTGGGCGCCA GCGGCTGCAGTTCTCCACACCAAAGGAGGAGGTGGGCGCCA < 41bp 1 0.488125530523755 1 0.698651313781738 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176016578 chr5:176016579 synonymous SNV . 0 22 hm5C_associated_SNPs_18614 0 0 0 0 2 CDHR2 chr5:176016617 5'GT 176016617 Upstream 39bp
chr1 155691314 155691314 1 + C T CESC 155691323 + 155691303 155691343 41 CCTAGGCCAAGCATGGGGATCAGCACGAGGGTCAGCACTAC CCTAGGCCAAGTATGGGGATCAGCACGAGGGTCAGCACTAC < 41bp 1 0.799020336918652 1 0.520326673984528 experiment 0.401959326162696 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DAP3 ENSG00000132676 CDS Human protein_coding chr1:155691323 chr1:155691314 nonsynonymous SNV 0.997 4 12 hm5C_associated_SNPs_18615 0 0 1 0 2 DAP3 chr1:155691308 3'AG 155691308 Downstream 7bp
chr1 155691314 155691314 1 + C T CESC 155691323 + 155691303 155691343 41 CCTAGGCCAAGCATGGGGATCAGCACGAGGGTCAGCACTAC CCTAGGCCAAGTATGGGGATCAGCACGAGGGTCAGCACTAC < 41bp 1 0.799020336918652 1 0.520326673984528 experiment 0.401959326162696 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DAP3 ENSG00000132676 CDS Human protein_coding chr1:155691323 chr1:155691314 nonsynonymous SNV 0.997 4 12 hm5C_associated_SNPs_18615 0 0 1 0 2 DAP3 chr1:155691409 5'GT 155691409 Upstream 96bp
chr9 131386727 131386727 1 + C T CESC 131386723 + 131386703 131386743 41 CTGGATGAGAACTCGGCCTTCCTTCAGTTCAACTGGAAGGC CTGGATGAGAACTCGGCCTTCCTTTAGTTCAACTGGAAGGC < 41bp 1 0.0214402267211009 1 0.0585028827190399 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131386723 chr9:131386727 stopgain 0.999 1 25 hm5C_associated_SNPs_18616 0 0 1 0 1 SPTAN1 chr9:131386766 5'GT 131386766 Upstream 40bp
chr1 28862519 28862519 1 + C T CESC 28862499 + 28862479 28862519 41 TTGCCATCTCCCATGAGGGCCACGTGTACGGCTTCGGCCTC TTGCCATCTCCCATGAGGGCCACGTGTACGGCTTCGGCCTT < 41bp 1 0.548685240599243 1 0.0960194170475006 experiment 0.902629518801515 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28862499 chr1:28862519 synonymous SNV . 0 41 hm5C_associated_SNPs_18618 0 0 1 0 1 RCC1 chr1:28862538 5'GT 28862538 Upstream 20bp
chr11 831574 831574 1 + C T CESC 831584 + 831564 831604 41 GGGACGCCTGCGAGGCCAGGCGGGCGGGCAGCAGCTGCAGG GGGACGCCTGTGAGGCCAGGCGGGCGGGCAGCAGCTGCAGG < 41bp 1 0.672268089566123 1 0.769412219524384 experiment 0.655463820867753 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:831584 chr11:831574 synonymous SNV . 0 11 hm5C_associated_SNPs_18619 0 0 1 0 1 CRACR2B chr11:831535 3'AG 831535 Downstream 40bp
chr2 71660368 71660368 1 + A G CESC 71660380 + 71660360 71660400 41 GAAAAAGCAATGACAAATCACTGCAAGAGTACACGTCATAA GAAAAAGCGATGACAAATCACTGCAAGAGTACACGTCATAA < 41bp 1 0.688829679407364 1 0.389955699443817 experiment 0.622340641185272 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF638 ENSG00000075292 CDS Human protein_coding chr2:71660380 chr2:71660368 synonymous SNV . 0 9 hm5C_associated_SNPs_18621 0 0 1 3 3 ZNF638 chr2:71660295 3'AG 71660295 Downstream 74bp
chr2 71660368 71660368 1 + A G CESC 71660380 + 71660360 71660400 41 GAAAAAGCAATGACAAATCACTGCAAGAGTACACGTCATAA GAAAAAGCGATGACAAATCACTGCAAGAGTACACGTCATAA < 41bp 1 0.688829679407364 1 0.389955699443817 experiment 0.622340641185272 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF638 ENSG00000075292 CDS Human protein_coding chr2:71660380 chr2:71660368 synonymous SNV . 0 9 hm5C_associated_SNPs_18621 0 0 1 3 3 ZNF638 chr2:71660358 3'AG 71660358 Downstream 11bp
chr2 71660368 71660368 1 + A G CESC 71660380 + 71660360 71660400 41 GAAAAAGCAATGACAAATCACTGCAAGAGTACACGTCATAA GAAAAAGCGATGACAAATCACTGCAAGAGTACACGTCATAA < 41bp 1 0.688829679407364 1 0.389955699443817 experiment 0.622340641185272 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF638 ENSG00000075292 CDS Human protein_coding chr2:71660380 chr2:71660368 synonymous SNV . 0 9 hm5C_associated_SNPs_18621 0 0 1 3 3 ZNF638 chr2:71660413 5'GT 71660413 Upstream 46bp
chr17 37358641 37358641 1 + C G CESC 37358628 + 37358608 37358648 41 ATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCG ATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTGGATGCCG < 41bp 1 0.102947753661812 1 0.0401149988174438 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358628 chr17:37358641 nonsynonymous SNV 0.988 2 34 hm5C_associated_SNPs_18622 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 72bp
chr17 37358641 37358641 1 + C G CESC 37358628 + 37358608 37358648 41 ATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCG ATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTGGATGCCG < 41bp 1 0.102947753661812 1 0.0401149988174438 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358628 chr17:37358641 nonsynonymous SNV 0.988 2 34 hm5C_associated_SNPs_18622 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 52bp
chr17 37358641 37358641 1 + C G CESC 37358657 + 37358637 37358677 41 GGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCA GGCTGGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCA < 41bp 1 0.253987050812396 1 0.0705798268318176 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358657 chr17:37358641 nonsynonymous SNV 0.988 2 5 hm5C_associated_SNPs_18623 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 72bp
chr17 37358641 37358641 1 + C G CESC 37358657 + 37358637 37358677 41 GGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCA GGCTGGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCA < 41bp 1 0.253987050812396 1 0.0705798268318176 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358657 chr17:37358641 nonsynonymous SNV 0.988 2 5 hm5C_associated_SNPs_18623 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 52bp
chr3 52233277 52233277 1 + G A CESC 52233278 + 52233258 52233298 41 ATGGAGAGTGTTGTTCGCCGCTGCCCATTCTTATCCCGAGT ATGGAGAGTGTTGTTCGCCACTGCCCATTCTTATCCCGAGT < 41bp 1 0.361623683113007 1 0.193198621273041 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233278 chr3:52233277 nonsynonymous SNV 0.994 2 20 hm5C_associated_SNPs_18624 0 0 1 0 2 ALAS1 chr3:52233226 3'AG 52233226 Downstream 52bp
chr3 52233277 52233277 1 + G A CESC 52233278 + 52233258 52233298 41 ATGGAGAGTGTTGTTCGCCGCTGCCCATTCTTATCCCGAGT ATGGAGAGTGTTGTTCGCCACTGCCCATTCTTATCCCGAGT < 41bp 1 0.361623683113007 1 0.193198621273041 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233278 chr3:52233277 nonsynonymous SNV 0.994 2 20 hm5C_associated_SNPs_18624 0 0 1 0 2 ALAS1 chr3:52233237 3'AG 52233237 Downstream 41bp
chr4 26407815 26407815 1 + T C CESC 26407834 + 26407814 26407854 41 ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCAT ACTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCAT < 41bp 1 0.34659496618693 1 0.259294748306274 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBPJ ENSG00000168214 CDS Human protein_coding chr4:26407834 chr4:26407815 synonymous SNV . 0 2 hm5C_associated_SNPs_18625 0 0 1 0 2 RBPJ chr4:26407797 3'AG 26407797 Downstream 19bp
chr4 26407815 26407815 1 + T C CESC 26407834 + 26407814 26407854 41 ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCAT ACTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCAT < 41bp 1 0.34659496618693 1 0.259294748306274 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBPJ ENSG00000168214 CDS Human protein_coding chr4:26407834 chr4:26407815 synonymous SNV . 0 2 hm5C_associated_SNPs_18625 0 0 1 0 2 RBPJ chr4:26407892 5'GT 26407892 Upstream 78bp
chr4 20568984 20568984 1 + G A CESC 20568982 + 20568962 20569002 41 AGTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGG AGTGATCCAGTTGACTTTTACCAATGCACCTGTCCATATGG < 41bp 1 0.0700011306361123 1 0.179872900247574 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568982 chr4:20568984 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_18626 0 0 1 0 2 SLIT2 chr4:20568885 3'AG 20568885 Downstream 100bp
chr4 20568984 20568984 1 + G A CESC 20568982 + 20568962 20569002 41 AGTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGG AGTGATCCAGTTGACTTTTACCAATGCACCTGTCCATATGG < 41bp 1 0.0700011306361123 1 0.179872900247574 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568982 chr4:20568984 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_18626 0 0 1 0 2 SLIT2 chr4:20569009 5'GT 20569009 Upstream 26bp
chr4 20568984 20568984 1 + G A CESC 20568983 + 20568963 20569003 41 GTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGGT GTGATCCAGTTGACTTTTACCAATGCACCTGTCCATATGGT < 41bp 1 0.127602436814906 1 0.408415645360947 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568983 chr4:20568984 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_18627 0 0 1 0 2 SLIT2 chr4:20568885 3'AG 20568885 Downstream 100bp
chr4 20568984 20568984 1 + G A CESC 20568983 + 20568963 20569003 41 GTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGGT GTGATCCAGTTGACTTTTACCAATGCACCTGTCCATATGGT < 41bp 1 0.127602436814906 1 0.408415645360947 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568983 chr4:20568984 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_18627 0 0 1 0 2 SLIT2 chr4:20569009 5'GT 20569009 Upstream 26bp
chr10 118306822 118306822 1 + C T CESC 118306831 + 118306811 118306851 41 GAAGTTTGCTACGAAAGACTCGGCTGCTTCAGTGATGACTC GAAGTTTGCTATGAAAGACTCGGCTGCTTCAGTGATGACTC < 41bp 1 0.659448019078728 1 0.31408417224884 experiment 0.681103961842544 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306831 chr10:118306822 synonymous SNV . 0 12 hm5C_associated_SNPs_18628 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 17bp
chr8 25149596 25149596 1 + G A CESC 25149584 + 25149564 25149604 41 CAGCTGCAGCAGATGACGTACAGCCTGATCGAGTGGCGGTC CAGCTGCAGCAGATGACGTACAGCCTGATCGAATGGCGGTC < 41bp 1 0.236718471603999 1 0.473519414663315 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25149584 chr8:25149596 synonymous SNV . 0 33 hm5C_associated_SNPs_18629 0 0 1 0 2 DOCK5 chr8:25149540 3'AG 25149540 Downstream 57bp
chr8 25149596 25149596 1 + G A CESC 25149584 + 25149564 25149604 41 CAGCTGCAGCAGATGACGTACAGCCTGATCGAGTGGCGGTC CAGCTGCAGCAGATGACGTACAGCCTGATCGAATGGCGGTC < 41bp 1 0.236718471603999 1 0.473519414663315 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25149584 chr8:25149596 synonymous SNV . 0 33 hm5C_associated_SNPs_18629 0 0 1 0 2 DOCK5 chr8:25149688 5'GT 25149688 Upstream 93bp
chr8 25149596 25149596 1 + G A CESC 25149611 + 25149591 25149631 41 ATCGAGTGGCGGTCCCAGATCCTGTCTGGGACGCTCCCCAA ATCGAATGGCGGTCCCAGATCCTGTCTGGGACGCTCCCCAA < 41bp 1 0.350792830919392 1 0.620818972587585 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25149611 chr8:25149596 synonymous SNV . 0 6 hm5C_associated_SNPs_18630 0 0 1 0 2 DOCK5 chr8:25149540 3'AG 25149540 Downstream 57bp
chr8 25149596 25149596 1 + G A CESC 25149611 + 25149591 25149631 41 ATCGAGTGGCGGTCCCAGATCCTGTCTGGGACGCTCCCCAA ATCGAATGGCGGTCCCAGATCCTGTCTGGGACGCTCCCCAA < 41bp 1 0.350792830919392 1 0.620818972587585 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25149611 chr8:25149596 synonymous SNV . 0 6 hm5C_associated_SNPs_18630 0 0 1 0 2 DOCK5 chr8:25149688 5'GT 25149688 Upstream 93bp
chr15 42052697 42052697 1 + C G CESC 42052715 + 42052695 42052735 41 TCCAAGGTTTCCAAAAGTCTCATTCTTACTCGAGTAAGTGT TCGAAGGTTTCCAAAAGTCTCATTCTTACTCGAGTAAGTGT < 41bp 1 0.0210569432172374 1 0.0432591736316681 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGA ENSG00000174197 CDS Human protein_coding chr15:42052715 chr15:42052697 synonymous SNV . 0 3 hm5C_associated_SNPs_18631 0 0 1 0 1 MGA chr15:42052727 5'GT 42052727 Upstream 31bp
chr11 74329661 74329661 1 + T C CESC 74329645 + 74329625 74329665 41 GCTGAATCCTCTTCGTCTTCCAAAAAGTTTGAGCAGTCACA GCTGAATCCTCTTCGTCTTCCAAAAAGTTTGAGCAGCCACA < 41bp 1 0.480343735078389 1 0.729762434959412 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329645 chr11:74329661 nonsynonymous SNV 0.960 0 37 hm5C_associated_SNPs_18632 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 80bp
chr11 74329661 74329661 1 + T C CESC 74329667 + 74329647 74329687 41 AAAAGTTTGAGCAGTCACATCTTCACATGTCAAGTGAGACA AAAAGTTTGAGCAGCCACATCTTCACATGTCAAGTGAGACA < 41bp 1 0.393833606216633 1 0.174960494041443 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329667 chr11:74329661 nonsynonymous SNV 0.960 0 15 hm5C_associated_SNPs_18633 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 80bp
chr11 74329661 74329661 1 + T C CESC 74329670 + 74329650 74329690 41 AGTTTGAGCAGTCACATCTTCACATGTCAAGTGAGACACAA AGTTTGAGCAGCCACATCTTCACATGTCAAGTGAGACACAA < 41bp 1 0.632368866241796 1 0.191314458847046 experiment 0.735262267516408 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329670 chr11:74329661 nonsynonymous SNV 0.960 0 12 hm5C_associated_SNPs_18634 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 80bp
chr2 182785383 182785383 1 + G T CESC 182785364 + 182785344 182785384 41 CGCTGATAACTTGTCATGCCCTTCTCCATTGAATGTAATGG CGCTGATAACTTGTCATGCCCTTCTCCATTGAATGTAATTG < 41bp 1 0.0597213044166087 1 0.0251990854740143 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182785364 chr2:182785383 nonsynonymous SNV 0.997 1 40 hm5C_associated_SNPs_18635 0 0 0 0 2 SSFA2 chr2:182785324 3'AG 182785324 Downstream 60bp
chr2 182785383 182785383 1 + G T CESC 182785364 + 182785344 182785384 41 CGCTGATAACTTGTCATGCCCTTCTCCATTGAATGTAATGG CGCTGATAACTTGTCATGCCCTTCTCCATTGAATGTAATTG < 41bp 1 0.0597213044166087 1 0.0251990854740143 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182785364 chr2:182785383 nonsynonymous SNV 0.997 1 40 hm5C_associated_SNPs_18635 0 0 0 0 2 SSFA2 chr2:182785389 5'GT 182785389 Upstream 7bp
chr19 46887119 46887119 1 + C T CESC 46887105 + 46887085 46887125 41 CTCCTCAACATATTCGAGCTCAACGGTTTACCCTCGGAGAC CTCCTCAACATATTCGAGCTCAACGGTTTACCCTTGGAGAC < 41bp 1 0.586155038076544 1 0.290757685899734 experiment 0.827689923846912 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46887105 chr19:46887119 nonsynonymous SNV 0.993 4 35 hm5C_associated_SNPs_18638 0 0 1 0 3 PPP5C chr19:46887037 3'AG 46887037 Downstream 83bp
chr19 46887119 46887119 1 + C T CESC 46887105 + 46887085 46887125 41 CTCCTCAACATATTCGAGCTCAACGGTTTACCCTCGGAGAC CTCCTCAACATATTCGAGCTCAACGGTTTACCCTTGGAGAC < 41bp 1 0.586155038076544 1 0.290757685899734 experiment 0.827689923846912 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46887105 chr19:46887119 nonsynonymous SNV 0.993 4 35 hm5C_associated_SNPs_18638 0 0 1 0 3 PPP5C chr19:46887041 3'AG 46887041 Downstream 79bp
chr19 46887119 46887119 1 + C T CESC 46887105 + 46887085 46887125 41 CTCCTCAACATATTCGAGCTCAACGGTTTACCCTCGGAGAC CTCCTCAACATATTCGAGCTCAACGGTTTACCCTTGGAGAC < 41bp 1 0.586155038076544 1 0.290757685899734 experiment 0.827689923846912 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46887105 chr19:46887119 nonsynonymous SNV 0.993 4 35 hm5C_associated_SNPs_18638 0 0 1 0 3 PPP5C chr19:46887135 5'GT 46887135 Upstream 17bp
chr11 108206586 108206586 1 + G C CESC 108206601 + 108206581 108206621 41 GACCTGAGACAAGATGCTGTCATGCAACAGGTCTTCCAGAT GACCTCAGACAAGATGCTGTCATGCAACAGGTCTTCCAGAT < 41bp 1 0.160592139741537 1 0.159273445606232 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108206601 chr11:108206586 synonymous SNV . 0 6 hm5C_associated_SNPs_18640 0 0 1 0 1 ATM chr11:108206572 3'AG 108206572 Downstream 15bp
chr9 139848676 139848676 1 + G A CESC 139848675 + 139848655 139848695 41 GGGCAGAGCTCAGGGCCTCTCGGATGACAACATCGTCTTCC GGGCAGAGCTCAGGGCCTCTCAGATGACAACATCGTCTTCC < 41bp 1 0.730493699543314 1 0.886481523513794 experiment 0.539012600913372 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control LCN12 ENSG00000184925 CDS Human protein_coding chr9:139848675 chr9:139848676 nonsynonymous SNV 0.013 1 22 hm5C_associated_SNPs_18641 0 0 0 0 2 LCN12 chr9:139848606 3'AG 139848606 Downstream 71bp
chr9 139848676 139848676 1 + G A CESC 139848675 + 139848655 139848695 41 GGGCAGAGCTCAGGGCCTCTCGGATGACAACATCGTCTTCC GGGCAGAGCTCAGGGCCTCTCAGATGACAACATCGTCTTCC < 41bp 1 0.730493699543314 1 0.886481523513794 experiment 0.539012600913372 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control LCN12 ENSG00000184925 CDS Human protein_coding chr9:139848675 chr9:139848676 nonsynonymous SNV 0.013 1 22 hm5C_associated_SNPs_18641 0 0 0 0 2 LCN12 chr9:139848707 5'GT 139848707 Upstream 32bp
chr14 61285492 61285492 1 + C T CESC 61285479 + 61285459 61285499 41 TTGCTCTGCTTTTGGCTCAGCATAAAGATAGATCTACCCAA TTGCTCTGCTTTTGGCTCAGCATAAAGATAGATTTACCCAA < 41bp 1 0.340652443748176 1 0.417488694190979 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61285479 chr14:61285492 nonsynonymous SNV 0.852 1 34 hm5C_associated_SNPs_18644 0 0 1 0 2 MNAT1 chr14:61285440 3'AG 61285440 Downstream 53bp
chr14 61285492 61285492 1 + C T CESC 61285479 + 61285459 61285499 41 TTGCTCTGCTTTTGGCTCAGCATAAAGATAGATCTACCCAA TTGCTCTGCTTTTGGCTCAGCATAAAGATAGATTTACCCAA < 41bp 1 0.340652443748176 1 0.417488694190979 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61285479 chr14:61285492 nonsynonymous SNV 0.852 1 34 hm5C_associated_SNPs_18644 0 0 1 0 2 MNAT1 chr14:61285565 5'GT 61285565 Upstream 74bp
chr19 45162113 45162113 1 + C G CESC 45162132 + 45162112 45162152 41 TCTATTGGTCCAAATGTTCCCGTGAGGTCCTTTGGCACTGT TGTATTGGTCCAAATGTTCCCGTGAGGTCCTTTGGCACTGT < 41bp 1 0.633036620456527 1 0.597163438796997 experiment 0.733926759086945 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45162132 chr19:45162113 nonsynonymous SNV 0.001 1 2 hm5C_associated_SNPs_18645 0 0 1 0 1 PVR chr19:45162168 5'GT 45162168 Upstream 56bp
chr11 209418 209418 1 + G A CESC 209400 + 209380 209420 41 TGGAGCCGCTCTTCTCCCTGCCCACAGAGACTGGCGGAGCT TGGAGCCGCTCTTCTCCCTGCCCACAGAGACTGGCGGAACT < 41bp 1 0.0288504373925153 1 0.449622839689255 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:209400 chr11:209418 synonymous SNV . 0 39 hm5C_associated_SNPs_18647 0 0 1 0 1 RIC8A chr11:209407 3'AG 209407 Downstream 12bp
chr11 209418 209418 1 + G A CESC 209401 + 209381 209421 41 GGAGCCGCTCTTCTCCCTGCCCACAGAGACTGGCGGAGCTG GGAGCCGCTCTTCTCCCTGCCCACAGAGACTGGCGGAACTG < 41bp 1 0.185597073908371 1 0.319804698228836 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:209401 chr11:209418 synonymous SNV . 0 38 hm5C_associated_SNPs_18648 0 0 1 0 1 RIC8A chr11:209407 3'AG 209407 Downstream 12bp
chr11 209418 209418 1 + G A CESC 209402 + 209382 209422 41 GAGCCGCTCTTCTCCCTGCCCACAGAGACTGGCGGAGCTGC GAGCCGCTCTTCTCCCTGCCCACAGAGACTGGCGGAACTGC < 41bp 1 0.280598866100314 1 0.511492609977722 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:209402 chr11:209418 synonymous SNV . 0 37 hm5C_associated_SNPs_18649 0 0 1 0 1 RIC8A chr11:209407 3'AG 209407 Downstream 12bp
chr9 125143678 125143678 1 + C G CESC 125143665 + 125143645 125143685 41 ACCAGGGAAGAAGCAGTTGCCAGATGCCCAGCTCCTGGCCC ACCAGGGAAGAAGCAGTTGCCAGATGCCCAGCTGCTGGCCC < 41bp 1 0.655740616818209 1 0.954894006252289 experiment 0.688518766363582 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout PTGS1 ENSG00000095303 CDS Human protein_coding chr9:125143665 chr9:125143678 synonymous SNV . 0 34 hm5C_associated_SNPs_18650 0 0 1 0 1 PTGS1 chr9:125143650 3'AG 125143650 Downstream 29bp
chr22 31592952 31592952 1 + G C CESC 31592933 + 31592913 31592953 41 CTGTTTCAGAGAGAAGACCCCTCCTCGTCCTCAAGGACAGA CTGTTTCAGAGAGAAGACCCCTCCTCGTCCTCAAGGACACA < 41bp 1 0.127960573014538 1 0.106719255447388 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF185 ENSG00000138942 CDS Human protein_coding chr22:31592933 chr22:31592952 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_18652 0 0 0 0 2 RNF185 chr22:31592922 3'AG 31592922 Downstream 31bp
chr22 31592952 31592952 1 + G C CESC 31592933 + 31592913 31592953 41 CTGTTTCAGAGAGAAGACCCCTCCTCGTCCTCAAGGACAGA CTGTTTCAGAGAGAAGACCCCTCCTCGTCCTCAAGGACACA < 41bp 1 0.127960573014538 1 0.106719255447388 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF185 ENSG00000138942 CDS Human protein_coding chr22:31592933 chr22:31592952 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_18652 0 0 0 0 2 RNF185 chr22:31592976 5'GT 31592976 Upstream 25bp
chrX 84502592 84502592 1 + G T CESC 84502590 + 84502570 84502610 41 TTGCTAAGTATGGATTCAGGCGGTGGAAGTCTTGGATTGCA TTGCTAAGTATGGATTCAGGCGTTGGAAGTCTTGGATTGCA < 41bp 1 0.310454180967563 1 0.338896006345749 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF711 ENSG00000147180 CDS Human protein_coding chrX:84502590 chrX:84502592 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_18653 0 0 1 0 2 ZNF711 chrX:84502553 3'AG 84502553 Downstream 40bp
chrX 84502592 84502592 1 + G T CESC 84502590 + 84502570 84502610 41 TTGCTAAGTATGGATTCAGGCGGTGGAAGTCTTGGATTGCA TTGCTAAGTATGGATTCAGGCGTTGGAAGTCTTGGATTGCA < 41bp 1 0.310454180967563 1 0.338896006345749 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF711 ENSG00000147180 CDS Human protein_coding chrX:84502590 chrX:84502592 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_18653 0 0 1 0 2 ZNF711 chrX:84502657 5'GT 84502657 Upstream 66bp
chr14 105179925 105179925 1 + C T CESC 105179914 + 105179894 105179934 41 CGGGGGCAGCAAGGCAGCCTCCATGGATCCCCCAAGAGCCA CGGGGGCAGCAAGGCAGCCTCCATGGATCCCTCAAGAGCCA < 41bp 1 0.15555354413761 1 0.355823427438736 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105179914 chr14:105179925 nonsynonymous SNV 0.004 1 32 hm5C_associated_SNPs_18654 0 0 1 0 1 INF2 chr14:105179943 5'GT 105179943 Upstream 19bp
chr14 105179925 105179925 1 + C T CESC 105179915 + 105179895 105179935 41 GGGGGCAGCAAGGCAGCCTCCATGGATCCCCCAAGAGCCAC GGGGGCAGCAAGGCAGCCTCCATGGATCCCTCAAGAGCCAC < 41bp 1 0.546933669546391 1 0.636946439743042 experiment 0.906132660907217 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105179915 chr14:105179925 nonsynonymous SNV 0.004 1 31 hm5C_associated_SNPs_18655 0 0 1 0 1 INF2 chr14:105179943 5'GT 105179943 Upstream 19bp
chrX 129159306 129159306 1 + G A CESC 129159311 + 129159291 129159331 41 AAATATCAGACTGGGGAGTACCTGACAGAGCAAGAAGACGA AAATATCAGACTGGGAAGTACCTGACAGAGCAAGAAGACGA < 41bp 1 0.125867014065905 1 0.1121826171875 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129159311 chrX:129159306 nonsynonymous SNV 0.998 3 16 hm5C_associated_SNPs_18656 0 0 1 0 1 BCORL1 chrX:129159354 5'GT 129159354 Upstream 49bp
chrX 12838851 12838851 1 + G T CESC 12838861 + 12838841 12838881 41 AAATAATGCCGCCTTTGAGGCTGTTGTCGTCACAAACACAA AAATAATGCCTCCTTTGAGGCTGTTGTCGTCACAAACACAA < 41bp 1 0.295872348278837 1 0.0669369399547577 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12838861 chrX:12838851 nonsynonymous SNV 0.991 0 11 hm5C_associated_SNPs_18657 0 0 1 0 2 PRPS2 chrX:12838763 3'AG 12838763 Downstream 89bp
chrX 12838851 12838851 1 + G T CESC 12838861 + 12838841 12838881 41 AAATAATGCCGCCTTTGAGGCTGTTGTCGTCACAAACACAA AAATAATGCCTCCTTTGAGGCTGTTGTCGTCACAAACACAA < 41bp 1 0.295872348278837 1 0.0669369399547577 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12838861 chrX:12838851 nonsynonymous SNV 0.991 0 11 hm5C_associated_SNPs_18657 0 0 1 0 2 PRPS2 chrX:12838922 5'GT 12838922 Upstream 72bp
chr15 28913434 28913434 1 + C T CESC 28913430 + 28913410 28913450 41 GTGCTGTTGTGACGGAGAGCCAGACGTACAAAAACCGAGCT GTGCTGTTGTGACGGAGAGCCAGATGTACAAAAACCGAGCT < 41bp 1 0.39392230962077 1 0.933065295219421 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28913430 chr15:28913434 . . 0 25 hm5C_associated_SNPs_18659 0 0 0 0 2 HERC2P9 chr15:28913403 3'AG 28913403 Downstream 32bp
chr15 28913434 28913434 1 + C T CESC 28913430 + 28913410 28913450 41 GTGCTGTTGTGACGGAGAGCCAGACGTACAAAAACCGAGCT GTGCTGTTGTGACGGAGAGCCAGATGTACAAAAACCGAGCT < 41bp 1 0.39392230962077 1 0.933065295219421 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28913430 chr15:28913434 . . 0 25 hm5C_associated_SNPs_18659 0 0 0 0 2 HERC2P9 chr15:28913501 5'GT 28913501 Upstream 68bp
chr22 50960208 50960208 1 + C G CESC 50960214 + 50960194 50960234 41 GTGTGGAGGAGGCTCTGGGACAGAAGCGCAAGAGGAAGGGC GTGTGGAGGAGGCTGTGGGACAGAAGCGCAAGAGGAAGGGC < 41bp 1 0.775135287964246 1 0.433242857456207 experiment 0.449729424071508 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50960214 chr22:50960208 nonsynonymous SNV 0.972 0 15 hm5C_associated_SNPs_18660 0 0 1 0 2 NCAPH2 chr22:50960170 3'AG 50960170 Downstream 39bp
chr22 50960208 50960208 1 + C G CESC 50960214 + 50960194 50960234 41 GTGTGGAGGAGGCTCTGGGACAGAAGCGCAAGAGGAAGGGC GTGTGGAGGAGGCTGTGGGACAGAAGCGCAAGAGGAAGGGC < 41bp 1 0.775135287964246 1 0.433242857456207 experiment 0.449729424071508 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50960214 chr22:50960208 nonsynonymous SNV 0.972 0 15 hm5C_associated_SNPs_18660 0 0 1 0 2 NCAPH2 chr22:50960277 5'GT 50960277 Upstream 70bp
chr9 123917084 123917084 1 + G C CESC 123917066 + 123917046 123917086 41 TAGAAAAATCACTCAAACATCATGAAGATATTGTAGATGAA TAGAAAAATCACTCAAACATCATGAAGATATTGTAGATCAA < 41bp 1 0.350692033613759 1 0.139353215694427 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNTRL ENSG00000119397 CDS Human protein_coding chr9:123917066 chr9:123917084 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_18661 0 0 0 0 1 CNTRL chr9:123916999 3'AG 123916999 Downstream 86bp
chr15 65931952 65931952 1 + G A CESC 65931959 + 65931939 65931979 41 TCCTTGCTGACCCGAGGGAGCAGCTCGACCTCTCTGCACAA TCCTTGCTGACCCAAGGGAGCAGCTCGACCTCTCTGCACAA < 41bp 1 0.432514085802226 1 0.148804396390915 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC24A1 ENSG00000074621 CDS Human protein_coding chr15:65931959 chr15:65931952 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_18664 0 0 0 0 2 SLC24A1 chr15:65931933 3'AG 65931933 Downstream 20bp
chr15 65931952 65931952 1 + G A CESC 65931959 + 65931939 65931979 41 TCCTTGCTGACCCGAGGGAGCAGCTCGACCTCTCTGCACAA TCCTTGCTGACCCAAGGGAGCAGCTCGACCTCTCTGCACAA < 41bp 1 0.432514085802226 1 0.148804396390915 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC24A1 ENSG00000074621 CDS Human protein_coding chr15:65931959 chr15:65931952 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_18664 0 0 0 0 2 SLC24A1 chr15:65932041 5'GT 65932041 Upstream 90bp
chr12 56504386 56504386 1 + C T CESC 56504375 + 56504355 56504395 41 GGACAGAGAACCACTATTTACAAACGAGACCCCTCTAAACA GGACAGAGAACCACTATTTACAAACGAGACCTCTCTAAACA < 41bp 1 0.352451384665064 1 0.409377574920654 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56504375 chr12:56504386 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_18665 0 0 1 0 2 PA2G4 chr12:56504343 3'AG 56504343 Downstream 44bp
chr12 56504386 56504386 1 + C T CESC 56504375 + 56504355 56504395 41 GGACAGAGAACCACTATTTACAAACGAGACCCCTCTAAACA GGACAGAGAACCACTATTTACAAACGAGACCTCTCTAAACA < 41bp 1 0.352451384665064 1 0.409377574920654 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56504375 chr12:56504386 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_18665 0 0 1 0 2 PA2G4 chr12:56504476 5'GT 56504476 Upstream 91bp
chr15 64388288 64388288 1 + G C CESC 64388268 + 64388248 64388288 41 GAGACTGCCTCCGCCCTTCCCCGGCCTGGAGCCGGAGTCCG GAGACTGCCTCCGCCCTTCCCCGGCCTGGAGCCGGAGTCCC < 41bp 1 0.568442024424658 1 0.550235211849213 experiment 0.863115951150683 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64388268 chr15:64388288 nonsynonymous SNV 0.999 0 41 hm5C_associated_SNPs_18666 0 0 1 0 1 SNX1 chr15:64388371 5'GT 64388371 Upstream 84bp
chr6 163984548 163984548 1 + C T CESC 163984557 + 163984537 163984577 41 CCTGCGTACTCCTACGCCAGCTGGCCCTACCATAATGCCTT CCTGCGTACTCTTACGCCAGCTGGCCCTACCATAATGCCTT < 41bp 1 0.362676163258051 1 0.266154527664185 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QKI ENSG00000112531 CDS Human protein_coding chr6:163984557 chr6:163984548 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_18668 0 0 1 0 2 QKI chr6:163984452 3'AG 163984452 Downstream 97bp
chr6 163984548 163984548 1 + C T CESC 163984557 + 163984537 163984577 41 CCTGCGTACTCCTACGCCAGCTGGCCCTACCATAATGCCTT CCTGCGTACTCTTACGCCAGCTGGCCCTACCATAATGCCTT < 41bp 1 0.362676163258051 1 0.266154527664185 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QKI ENSG00000112531 CDS Human protein_coding chr6:163984557 chr6:163984548 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_18668 0 0 1 0 2 QKI chr6:163984476 3'AG 163984476 Downstream 73bp
chr1 22333386 22333386 1 + C T CESC 22333371 + 22333351 22333391 41 GACTGTTCCCTCCTCCCCAGCAATGACATCGCCCTCATCAA GACTGTTCCCTCCTCCCCAGCAATGACATCGCCCTTATCAA < 41bp 1 0.196833213609407 1 0.0384799242019653 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333371 chr1:22333386 synonymous SNV . 0 36 hm5C_associated_SNPs_18674 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 16bp
chr1 22333386 22333386 1 + C T CESC 22333377 + 22333357 22333397 41 TCCCTCCTCCCCAGCAATGACATCGCCCTCATCAAGCTCTC TCCCTCCTCCCCAGCAATGACATCGCCCTTATCAAGCTCTC < 41bp 1 0.296591234440329 1 0.30794095993042 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333377 chr1:22333386 synonymous SNV . 0 30 hm5C_associated_SNPs_18675 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 16bp
chr1 22333386 22333386 1 + C T CESC 22333380 + 22333360 22333400 41 CTCCTCCCCAGCAATGACATCGCCCTCATCAAGCTCTCACG CTCCTCCCCAGCAATGACATCGCCCTTATCAAGCTCTCACG < 41bp 1 0.364815120777003 1 0.0476687252521515 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333380 chr1:22333386 synonymous SNV . 0 27 hm5C_associated_SNPs_18676 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 16bp
chr1 22333386 22333386 1 + C T CESC 22333382 + 22333362 22333402 41 CCTCCCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCA CCTCCCCAGCAATGACATCGCCCTTATCAAGCTCTCACGCA < 41bp 1 0.178311122858818 1 0.019139289855957 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333382 chr1:22333386 synonymous SNV . 0 25 hm5C_associated_SNPs_18677 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 16bp
chr1 22333386 22333386 1 + C T CESC 22333383 + 22333363 22333403 41 CTCCCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCAG CTCCCCAGCAATGACATCGCCCTTATCAAGCTCTCACGCAG < 41bp 1 0.144789196375656 1 0.0162779986858368 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333383 chr1:22333386 synonymous SNV . 0 24 hm5C_associated_SNPs_18678 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 16bp
chr1 22333386 22333386 1 + C T CESC 22333384 + 22333364 22333404 41 TCCCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCAGC TCCCCAGCAATGACATCGCCCTTATCAAGCTCTCACGCAGC < 41bp 1 0.092873641012483 1 0.0278991460800171 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333384 chr1:22333386 synonymous SNV . 0 23 hm5C_associated_SNPs_18679 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 16bp
chr1 22333386 22333386 1 + C T CESC 22333389 + 22333369 22333409 41 AGCAATGACATCGCCCTCATCAAGCTCTCACGCAGCGCCCA AGCAATGACATCGCCCTTATCAAGCTCTCACGCAGCGCCCA < 41bp 1 0.690484447346871 1 0.806890487670898 experiment 0.619031105306259 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333389 chr1:22333386 synonymous SNV . 0 18 hm5C_associated_SNPs_18680 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 16bp
chr1 22333386 22333386 1 + C T CESC 22333393 + 22333373 22333413 41 ATGACATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTG ATGACATCGCCCTTATCAAGCTCTCACGCAGCGCCCAGCTG < 41bp 1 0.221154829243277 1 0.0228935182094574 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333393 chr1:22333386 synonymous SNV . 0 14 hm5C_associated_SNPs_18681 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 16bp
chr1 22333386 22333386 1 + C T CESC 22333395 + 22333375 22333415 41 GACATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGG GACATCGCCCTTATCAAGCTCTCACGCAGCGCCCAGCTGGG < 41bp 1 0.215729882349511 1 0.146072059869766 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333395 chr1:22333386 synonymous SNV . 0 12 hm5C_associated_SNPs_18682 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 16bp
chr1 22333386 22333386 1 + C T CESC 22333397 + 22333377 22333417 41 CATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAG CATCGCCCTTATCAAGCTCTCACGCAGCGCCCAGCTGGGAG < 41bp 1 0.589897944978121 1 0.239843904972076 experiment 0.820204110043757 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333397 chr1:22333386 synonymous SNV . 0 10 hm5C_associated_SNPs_18683 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 16bp
chr1 22333386 22333386 1 + C T CESC 22333399 + 22333379 22333419 41 TCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGAT TCGCCCTTATCAAGCTCTCACGCAGCGCCCAGCTGGGAGAT < 41bp 1 0.633007961222371 1 0.213215976953506 experiment 0.733984077555258 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333399 chr1:22333386 synonymous SNV . 0 8 hm5C_associated_SNPs_18684 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 16bp
chr1 22333386 22333386 1 + C T CESC 22333401 + 22333381 22333421 41 GCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGC GCCCTTATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGC < 41bp 1 0.735534416819972 1 0.173701256513596 experiment 0.528931166360056 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333401 chr1:22333386 synonymous SNV . 0 6 hm5C_associated_SNPs_18685 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 16bp
chr1 22333386 22333386 1 + C T CESC 22333404 + 22333384 22333424 41 CTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGT CTTATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGT < 41bp 1 0.308217356441503 1 0.146013498306274 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333404 chr1:22333386 synonymous SNV . 0 3 hm5C_associated_SNPs_18686 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 16bp
chr1 22333386 22333386 1 + C T CESC 22333406 + 22333386 22333426 41 CATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCC TATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCC < 41bp 1 0.349906935323659 1 0.0669881999492645 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333406 chr1:22333386 synonymous SNV . 0 1 hm5C_associated_SNPs_18687 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 16bp
chr19 50169991 50169991 1 + G A CESC 50169998 + 50169978 50170018 41 GGGAAGACACGCTGAGGGTCCTAGCTGCCTTCCTTAGGCGT GGGAAGACACGCTAAGGGTCCTAGCTGCCTTCCTTAGGCGT < 41bp 1 0.361818889200155 1 0.20948988199234 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BCL2L12 ENSG00000126453 CDS Human protein_coding chr19:50169998 chr19:50169991 synonymous SNV . 0 14 hm5C_associated_SNPs_18688 0 0 1 0 2 BCL2L12 chr19:50169942 3'AG 50169942 Downstream 50bp
chr19 50169991 50169991 1 + G A CESC 50169998 + 50169978 50170018 41 GGGAAGACACGCTGAGGGTCCTAGCTGCCTTCCTTAGGCGT GGGAAGACACGCTAAGGGTCCTAGCTGCCTTCCTTAGGCGT < 41bp 1 0.361818889200155 1 0.20948988199234 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BCL2L12 ENSG00000126453 CDS Human protein_coding chr19:50169998 chr19:50169991 synonymous SNV . 0 14 hm5C_associated_SNPs_18688 0 0 1 0 2 BCL2L12 chr19:50170056 5'GT 50170056 Upstream 66bp
chrX 154306951 154306951 1 + C T CESC 154306939 + 154306919 154306959 41 TGAGAGTTGTGGGCTGGTATCATTCCCATCCTCATATAACT TGAGAGTTGTGGGCTGGTATCATTCCCATCCTTATATAACT < 41bp 1 0.10837522903632 1 0.15511217713356 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BRCC3 ENSG00000185515 CDS Human protein_coding chrX:154306939 chrX:154306951 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_18689 0 0 0 0 1 BRCC3 chrX:154306978 5'GT 154306978 Upstream 28bp
chr6 163984559 163984559 1 + G T CESC 163984557 + 163984537 163984577 41 CCTGCGTACTCCTACGCCAGCTGGCCCTACCATAATGCCTT CCTGCGTACTCCTACGCCAGCTTGCCCTACCATAATGCCTT < 41bp 1 0.151175376216045 1 0.0790152549743652 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QKI ENSG00000112531 CDS Human protein_coding chr6:163984557 chr6:163984559 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_18690 0 0 1 0 1 QKI chr6:163984476 3'AG 163984476 Downstream 84bp
chr12 69044238 69044238 1 + C G CESC 69044226 + 69044206 69044246 41 TGTAGAAAAATACGATCCTACGATAGAAGATTCTTATAGAA TGTAGAAAAATACGATCCTACGATAGAAGATTGTTATAGAA < 41bp 1 0.442060447468715 1 0.266001403331757 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAP1B ENSG00000127314 CDS Human protein_coding chr12:69044226 chr12:69044238 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_18692 0 0 0 0 2 RAP1B chr12:69044180 3'AG 69044180 Downstream 59bp
chr12 69044238 69044238 1 + C G CESC 69044226 + 69044206 69044246 41 TGTAGAAAAATACGATCCTACGATAGAAGATTCTTATAGAA TGTAGAAAAATACGATCCTACGATAGAAGATTGTTATAGAA < 41bp 1 0.442060447468715 1 0.266001403331757 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAP1B ENSG00000127314 CDS Human protein_coding chr12:69044226 chr12:69044238 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_18692 0 0 0 0 2 RAP1B chr12:69044248 5'GT 69044248 Upstream 11bp
chr19 54606438 54606438 1 + C A CESC 54606432 + 54606412 54606452 41 ACCCCTTCAGGAGTCGGCGCCTTCCTCAAGAATGCCTGGGA ACCCCTTCAGGAGTCGGCGCCTTCCTAAAGAATGCCTGGGA < 41bp 1 0.12853303691886 1 0.110865831375122 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54606432 chr19:54606438 nonsynonymous SNV 0.964 0 27 hm5C_associated_SNPs_18693 0 0 1 0 2 NDUFA3 chr19:54606422 3'AG 54606422 Downstream 17bp
chr19 54606438 54606438 1 + C A CESC 54606432 + 54606412 54606452 41 ACCCCTTCAGGAGTCGGCGCCTTCCTCAAGAATGCCTGGGA ACCCCTTCAGGAGTCGGCGCCTTCCTAAAGAATGCCTGGGA < 41bp 1 0.12853303691886 1 0.110865831375122 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54606432 chr19:54606438 nonsynonymous SNV 0.964 0 27 hm5C_associated_SNPs_18693 0 0 1 0 2 NDUFA3 chr19:54606496 5'GT 54606496 Upstream 59bp
chr2 173451105 173451105 1 + G A CESC 173451098 + 173451078 173451118 41 CCAAGACCTCGTGTTGAGACCTCCCGCGCAGTGCCTCTGGT CCAAGACCTCGTGTTGAGACCTCCCGCACAGTGCCTCTGGT < 41bp 1 0.336725978835353 1 0.683308839797974 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK1 ENSG00000152256 CDS Human protein_coding chr2:173451098 chr2:173451105 nonsynonymous SNV 0.037 1 28 hm5C_associated_SNPs_18695 0 0 1 0 2 PDK1 chr2:173451006 3'AG 173451006 Downstream 100bp
chr2 173451105 173451105 1 + G A CESC 173451098 + 173451078 173451118 41 CCAAGACCTCGTGTTGAGACCTCCCGCGCAGTGCCTCTGGT CCAAGACCTCGTGTTGAGACCTCCCGCACAGTGCCTCTGGT < 41bp 1 0.336725978835353 1 0.683308839797974 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK1 ENSG00000152256 CDS Human protein_coding chr2:173451098 chr2:173451105 nonsynonymous SNV 0.037 1 28 hm5C_associated_SNPs_18695 0 0 1 0 2 PDK1 chr2:173451116 5'GT 173451116 Upstream 12bp
chr3 142756119 142756119 1 + C T CESC 142756138 + 142756118 142756158 41 TCGATGATCTTGATGGAGTCCCTATAAAAAGTCTTGATGAT TTGATGATCTTGATGGAGTCCCTATAAAAAGTCTTGATGAT < 41bp 1 0.0432010039089975 1 0.0851345658302307 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2SURP ENSG00000163714 CDS Human protein_coding chr3:142756138 chr3:142756119 synonymous SNV . 0 2 hm5C_associated_SNPs_18700 0 0 1 0 2 U2SURP chr3:142756021 3'AG 142756021 Downstream 99bp
chr3 142756119 142756119 1 + C T CESC 142756138 + 142756118 142756158 41 TCGATGATCTTGATGGAGTCCCTATAAAAAGTCTTGATGAT TTGATGATCTTGATGGAGTCCCTATAAAAAGTCTTGATGAT < 41bp 1 0.0432010039089975 1 0.0851345658302307 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2SURP ENSG00000163714 CDS Human protein_coding chr3:142756138 chr3:142756119 synonymous SNV . 0 2 hm5C_associated_SNPs_18700 0 0 1 0 2 U2SURP chr3:142756177 5'GT 142756177 Upstream 59bp
chr3 142756119 142756119 1 + C T CESC 142756139 + 142756119 142756159 41 CGATGATCTTGATGGAGTCCCTATAAAAAGTCTTGATGATG TGATGATCTTGATGGAGTCCCTATAAAAAGTCTTGATGATG < 41bp 1 0.32997454423025 1 0.29779851436615 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2SURP ENSG00000163714 CDS Human protein_coding chr3:142756139 chr3:142756119 synonymous SNV . 0 1 hm5C_associated_SNPs_18701 0 0 1 0 2 U2SURP chr3:142756021 3'AG 142756021 Downstream 99bp
chr3 142756119 142756119 1 + C T CESC 142756139 + 142756119 142756159 41 CGATGATCTTGATGGAGTCCCTATAAAAAGTCTTGATGATG TGATGATCTTGATGGAGTCCCTATAAAAAGTCTTGATGATG < 41bp 1 0.32997454423025 1 0.29779851436615 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2SURP ENSG00000163714 CDS Human protein_coding chr3:142756139 chr3:142756119 synonymous SNV . 0 1 hm5C_associated_SNPs_18701 0 0 1 0 2 U2SURP chr3:142756177 5'GT 142756177 Upstream 59bp
chr12 72316786 72316786 1 + G A CESC 72316769 + 72316749 72316789 41 TTTTTCATATCCAGGAATTGCCACAAGCAGTCTGTGAGATC TTTTTCATATCCAGGAATTGCCACAAGCAGTCTGTGAAATC < 41bp 1 0.406975142904303 1 0.105422288179398 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72316769 chr12:72316786 synonymous SNV . 0 38 hm5C_associated_SNPs_18702 0 0 1 0 1 TBC1D15 chr12:72316763 3'AG 72316763 Downstream 24bp
chr12 72316786 72316786 1 + G A CESC 72316770 + 72316750 72316790 41 TTTTCATATCCAGGAATTGCCACAAGCAGTCTGTGAGATCC TTTTCATATCCAGGAATTGCCACAAGCAGTCTGTGAAATCC < 41bp 1 0.772060047880737 1 0.380951970815659 experiment 0.455879904238525 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72316770 chr12:72316786 synonymous SNV . 0 37 hm5C_associated_SNPs_18703 0 0 1 0 1 TBC1D15 chr12:72316763 3'AG 72316763 Downstream 24bp
chr5 74069849 74069849 1 + T C CESC 74069862 + 74069842 74069882 41 GAGCGAATTGGGCCTTGTGACACAAGGAGGCAAAGTTATTT GAGCGAACTGGGCCTTGTGACACAAGGAGGCAAAGTTATTT < 41bp 1 0.748132723879678 1 0.334720820188522 experiment 0.503734552240643 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NSA2 ENSG00000164346 CDS Human protein_coding chr5:74069862 chr5:74069849 synonymous SNV . 0 8 hm5C_associated_SNPs_18704 0 0 1 0 1 NSA2 chr5:74069885 5'GT 74069885 Upstream 37bp
chr2 39008747 39008747 1 + G A CESC 39008755 + 39008735 39008775 41 GAAACTATGAATGAAGGGGACCATAGAGTGAGGGAGAAGCT GAAACTATGAATAAAGGGGACCATAGAGTGAGGGAGAAGCT < 41bp 1 0.193001654923801 1 0.0817839801311493 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39008755 chr2:39008747 nonsynonymous SNV 0.867 2 13 hm5C_associated_SNPs_18706 0 0 1 1 1 GEMIN6 chr2:39008659 3'AG 39008659 Downstream 89bp
chr20 62648114 62648114 1 + C T CESC 62648117 + 62648097 62648137 41 GCTGGGAGTGTGGCCACCTGCCAGGCCGTCATGCGTGCCGT GCTGGGAGTGTGGCCACTTGCCAGGCCGTCATGCGTGCCGT < 41bp 1 0.743536664924219 1 0.565460860729218 experiment 0.512926670151562 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62648117 chr20:62648114 synonymous SNV . 0 18 hm5C_associated_SNPs_18707 0 0 1 0 1 PRPF6 chr20:62648076 3'AG 62648076 Downstream 39bp
chr20 62648114 62648114 1 + C T CESC 62648123 + 62648103 62648143 41 AGTGTGGCCACCTGCCAGGCCGTCATGCGTGCCGTGATTGG AGTGTGGCCACTTGCCAGGCCGTCATGCGTGCCGTGATTGG < 41bp 1 0.40349809271582 1 0.0556627511978149 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62648123 chr20:62648114 synonymous SNV . 0 12 hm5C_associated_SNPs_18708 0 0 1 0 1 PRPF6 chr20:62648076 3'AG 62648076 Downstream 39bp
chr20 62648114 62648114 1 + C T CESC 62648130 + 62648110 62648150 41 CCACCTGCCAGGCCGTCATGCGTGCCGTGATTGGGATTGGG CCACTTGCCAGGCCGTCATGCGTGCCGTGATTGGGATTGGG < 41bp 1 0.163490772954713 1 0.0266062319278717 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62648130 chr20:62648114 synonymous SNV . 0 5 hm5C_associated_SNPs_18709 0 0 1 0 1 PRPF6 chr20:62648076 3'AG 62648076 Downstream 39bp
chr11 119142571 119142571 1 + G C CESC 119142558 + 119142538 119142578 41 TCGGATTACTAAAGCAGATGCTGCGGAATTTTGGAGAAAAG TCGGATTACTAAAGCAGATGCTGCGGAATTTTGCAGAAAAG < 41bp 1 0.310853207022435 1 0.372774958610535 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CBL ENSG00000110395 CDS Human protein_coding chr11:119142558 chr11:119142571 nonsynonymous SNV 1.000 5 34 hm5C_associated_SNPs_18710 0 0 1 0 1 CBL chr11:119142591 5'GT 119142591 Upstream 21bp
chr12 95877012 95877012 1 + G A CESC 95877015 + 95876995 95877035 41 AGATGGCGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAA AGATGGCGATGGAGATGAAGCAACTGGAAAGAAGAAGAAAA < 41bp 1 0.463340241941279 1 0.393874019384384 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout METAP2 ENSG00000111142 CDS Human protein_coding chr12:95877015 chr12:95877012 nonsynonymous SNV 0.999 2 18 hm5C_associated_SNPs_18711 0 0 1 1 2 METAP2 chr12:95876991 3'AG 95876991 Downstream 22bp
chr12 95877012 95877012 1 + G A CESC 95877015 + 95876995 95877035 41 AGATGGCGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAA AGATGGCGATGGAGATGAAGCAACTGGAAAGAAGAAGAAAA < 41bp 1 0.463340241941279 1 0.393874019384384 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout METAP2 ENSG00000111142 CDS Human protein_coding chr12:95877015 chr12:95877012 nonsynonymous SNV 0.999 2 18 hm5C_associated_SNPs_18711 0 0 1 1 2 METAP2 chr12:95877056 5'GT 95877056 Upstream 45bp
chr19 18976551 18976551 1 + G A CESC 18976545 + 18976525 18976565 41 ATCTCCATGAGCCAGCCTTCCCAGATGAGCCAGCCCGGCCT ATCTCCATGAGCCAGCCTTCCCAGATAAGCCAGCCCGGCCT < 41bp 1 0.726379274823265 1 0.0908582210540771 experiment 0.54724145035347 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18976545 chr19:18976551 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_18712 0 0 1 0 1 UPF1 chr19:18976587 5'GT 18976587 Upstream 37bp
chr1 154233543 154233543 1 + G T CESC 154233546 + 154233526 154233566 41 TACTATACAGGGGTCCCGGGCCTCCCCAGCACCTTCCAGTA TACTATACAGGGGTCCCTGGCCTCCCCAGCACCTTCCAGTA < 41bp 1 0.0963333007470768 1 0.211000263690948 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154233546 chr1:154233543 synonymous SNV . 0 18 hm5C_associated_SNPs_18714 0 0 1 0 1 UBAP2L chr1:154233585 5'GT 154233585 Upstream 43bp
chr11 65062110 65062110 1 + G A CESC 65062109 + 65062089 65062129 41 CTGCTTTTCCACCTGGGGGCCGAGGAGATCAGTAGGTAAGA CTGCTTTTCCACCTGGGGGCCAAGGAGATCAGTAGGTAAGA < 41bp 1 0.482868503532976 1 0.726749062538147 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLA2 ENSG00000014138 CDS Human protein_coding chr11:65062109 chr11:65062110 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_18715 0 0 1 0 2 POLA2 chr11:65062017 3'AG 65062017 Downstream 94bp
chr11 65062110 65062110 1 + G A CESC 65062109 + 65062089 65062129 41 CTGCTTTTCCACCTGGGGGCCGAGGAGATCAGTAGGTAAGA CTGCTTTTCCACCTGGGGGCCAAGGAGATCAGTAGGTAAGA < 41bp 1 0.482868503532976 1 0.726749062538147 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLA2 ENSG00000014138 CDS Human protein_coding chr11:65062109 chr11:65062110 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_18715 0 0 1 0 2 POLA2 chr11:65062123 5'GT 65062123 Upstream 14bp
chr2 170804131 170804131 1 + T G CESC 170804126 + 170804106 170804146 41 TTAGTGTCAAACATGCGACACTTTATAAACTATGTTAGAGT TTAGTGTCAAACATGCGACACTTTAGAAACTATGTTAGAGT < 41bp 1 0.0741663281233972 1 0.0634437501430511 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBR3 ENSG00000144357 CDS Human protein_coding chr2:170804126 chr2:170804131 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_18716 0 0 1 1 2 UBR3 chr2:170804052 3'AG 170804052 Downstream 80bp
chr2 170804131 170804131 1 + T G CESC 170804126 + 170804106 170804146 41 TTAGTGTCAAACATGCGACACTTTATAAACTATGTTAGAGT TTAGTGTCAAACATGCGACACTTTAGAAACTATGTTAGAGT < 41bp 1 0.0741663281233972 1 0.0634437501430511 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBR3 ENSG00000144357 CDS Human protein_coding chr2:170804126 chr2:170804131 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_18716 0 0 1 1 2 UBR3 chr2:170804225 5'GT 170804225 Upstream 95bp
chr3 184104671 184104671 1 + G A CESC 184104655 + 184104635 184104675 41 ACGAACGGTGATCTGTGACCCGGTGGTGTGCCCACCGCCCA ACGAACGGTGATCTGTGACCCGGTGGTGTGCCCACCACCCA < 41bp 1 0.721046553903067 1 0.706035435199738 experiment 0.557906892193866 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CHRD ENSG00000090539 CDS Human protein_coding chr3:184104655 chr3:184104671 synonymous SNV . 0 37 hm5C_associated_SNPs_18717 0 0 1 0 2 CHRD chr3:184104633 3'AG 184104633 Downstream 39bp
chr3 184104671 184104671 1 + G A CESC 184104655 + 184104635 184104675 41 ACGAACGGTGATCTGTGACCCGGTGGTGTGCCCACCGCCCA ACGAACGGTGATCTGTGACCCGGTGGTGTGCCCACCACCCA < 41bp 1 0.721046553903067 1 0.706035435199738 experiment 0.557906892193866 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CHRD ENSG00000090539 CDS Human protein_coding chr3:184104655 chr3:184104671 synonymous SNV . 0 37 hm5C_associated_SNPs_18717 0 0 1 0 2 CHRD chr3:184104726 5'GT 184104726 Upstream 56bp
chrX 123195682 123195682 1 + G A CESC 123195669 + 123195649 123195689 41 GATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAAT GATTGAAATAATGCTTTGTACCATTAGACAAGCAGCTGAAT < 41bp 1 0.0704433718743701 1 0.0286092460155487 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123195669 chrX:123195682 synonymous SNV . 0 34 hm5C_associated_SNPs_18719 0 0 1 0 1 STAG2 chrX:123195621 3'AG 123195621 Downstream 62bp
chrX 123195682 123195682 1 + G A CESC 123195670 + 123195650 123195690 41 ATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAATG ATTGAAATAATGCTTTGTACCATTAGACAAGCAGCTGAATG < 41bp 1 0.360365803530316 1 0.0805231630802155 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123195670 chrX:123195682 synonymous SNV . 0 33 hm5C_associated_SNPs_18720 0 0 1 0 1 STAG2 chrX:123195621 3'AG 123195621 Downstream 62bp
chrX 153696531 153696531 1 + G A CESC 153696529 + 153696509 153696549 41 ACGCCGTGCGCGTGCTCTTCCCGGGCATCGAGGCCCACCCG ACGCCGTGCGCGTGCTCTTCCCAGGCATCGAGGCCCACCCG < 41bp 1 0.46309827459595 1 0.710987567901611 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696529 chrX:153696531 synonymous SNV . 0 23 hm5C_associated_SNPs_18722 0 0 1 0 1 PLXNA3 chrX:153696567 5'GT 153696567 Upstream 37bp
chrX 153696531 153696531 1 + G A CESC 153696537 + 153696517 153696557 41 CGCGTGCTCTTCCCGGGCATCGAGGCCCACCCGGTGCTCAA CGCGTGCTCTTCCCAGGCATCGAGGCCCACCCGGTGCTCAA < 41bp 1 0.65675845270244 1 0.977012276649475 experiment 0.68648309459512 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696537 chrX:153696531 synonymous SNV . 0 15 hm5C_associated_SNPs_18723 0 0 1 0 1 PLXNA3 chrX:153696567 5'GT 153696567 Upstream 37bp
chr15 62994255 62994255 1 + G A CESC 62994253 + 62994233 62994273 41 TCACCACTATTTCTTCCAACCTGACGGAGATGTCCAAGGGT TCACCACTATTTCTTCCAACCTAACGGAGATGTCCAAGGGT < 41bp 1 0.0464007562651213 1 0.324165761470795 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:62994253 chr15:62994255 synonymous SNV . 0 23 hm5C_associated_SNPs_18724 0 0 0 0 1 TLN2 chr15:62994191 3'AG 62994191 Downstream 65bp
chrX 135291510 135291510 1 + G A CESC 135291501 + 135291481 135291521 41 TCTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATC TCTCACCCTGTTTCCCAGCGCCAACCTCCAGGGCAGGCATC < 41bp 1 0.0735975453163849 1 0.145043253898621 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291501 chrX:135291510 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_18725 1 0 1 0 1 FHL1 chrX:135291601 5'GT 135291601 Upstream 92bp
chrX 135291510 135291510 1 + G A CESC 135291502 + 135291482 135291522 41 CTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATCC CTCACCCTGTTTCCCAGCGCCAACCTCCAGGGCAGGCATCC < 41bp 1 0.179579859714858 1 0.0411967933177948 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291502 chrX:135291510 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_18726 1 0 1 0 1 FHL1 chrX:135291601 5'GT 135291601 Upstream 92bp
chr7 2695739 2695739 1 + G T CESC 2695731 + 2695711 2695751 41 GTGCGTGCCCCCCAGGACCCCCTCCTCCGCGTCCAGGAGGT GTGCGTGCCCCCCAGGACCCCCTCCTCCTCGTCCAGGAGGT < 41bp 1 0.0227449883851173 1 0.0784537196159363 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2695731 chr7:2695739 nonsynonymous SNV 0.931 0 29 hm5C_associated_SNPs_18728 0 0 1 0 2 TTYH3 chr7:2695726 3'AG 2695726 Downstream 14bp
chr7 2695739 2695739 1 + G T CESC 2695731 + 2695711 2695751 41 GTGCGTGCCCCCCAGGACCCCCTCCTCCGCGTCCAGGAGGT GTGCGTGCCCCCCAGGACCCCCTCCTCCTCGTCCAGGAGGT < 41bp 1 0.0227449883851173 1 0.0784537196159363 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2695731 chr7:2695739 nonsynonymous SNV 0.931 0 29 hm5C_associated_SNPs_18728 0 0 1 0 2 TTYH3 chr7:2695818 5'GT 2695818 Upstream 80bp
chr7 2695739 2695739 1 + G T CESC 2695734 + 2695714 2695754 41 CGTGCCCCCCAGGACCCCCTCCTCCGCGTCCAGGAGGTGCT CGTGCCCCCCAGGACCCCCTCCTCCTCGTCCAGGAGGTGCT < 41bp 1 0.0197660654972534 1 0.136904418468475 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2695734 chr7:2695739 nonsynonymous SNV 0.931 0 26 hm5C_associated_SNPs_18729 0 0 1 0 2 TTYH3 chr7:2695726 3'AG 2695726 Downstream 14bp
chr7 2695739 2695739 1 + G T CESC 2695734 + 2695714 2695754 41 CGTGCCCCCCAGGACCCCCTCCTCCGCGTCCAGGAGGTGCT CGTGCCCCCCAGGACCCCCTCCTCCTCGTCCAGGAGGTGCT < 41bp 1 0.0197660654972534 1 0.136904418468475 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2695734 chr7:2695739 nonsynonymous SNV 0.931 0 26 hm5C_associated_SNPs_18729 0 0 1 0 2 TTYH3 chr7:2695818 5'GT 2695818 Upstream 80bp
chrX 135106633 135106633 1 + T C CESC 135106613 + 135106593 135106633 41 TGGGTATTTGGTGGTGGCACCACTGCAATGCTGTCATGCTT TGGGTATTTGGTGGTGGCACCACTGCAATGCTGTCATGCTC < 41bp 1 0.349311933891847 1 0.676746785640717 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135106613 chrX:135106633 nonsynonymous SNV 0.999 4 41 hm5C_associated_SNPs_18733 0 0 1 0 1 SLC9A6 chrX:135106642 5'GT 135106642 Upstream 10bp
chr7 72396972 72396972 1 + G C CESC 72396980 + 72396960 72397000 41 AGCCCAGTGACTGTGAGGATCGCCCCTCCTGACAGAAGATT AGCCCAGTGACTCTGAGGATCGCCCCTCCTGACAGAAGATT < 41bp 1 0.116852028643248 1 0.123295694589615 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control POM121 ENSG00000196313 CDS Human protein_coding chr7:72396980 chr7:72396972 nonsynonymous SNV 0.981 2 13 hm5C_associated_SNPs_18737 0 0 0 0 1 POM121 chr7:72397015 5'GT 72397015 Upstream 44bp
chrX 49031028 49031028 1 + A T CESC 49031034 + 49031014 49031054 41 CCTGCAGACCCCGCAGATGGCCCGGTGTAGGCGAACTTCCC CCTGCAGACCCCGCTGATGGCCCGGTGTAGGCGAACTTCCC < 41bp 1 0.566963147012978 1 0.269195377826691 experiment 0.866073705974044 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLP2 ENSG00000102007 CDS Human protein_coding chrX:49031034 chrX:49031028 synonymous SNV . 0 15 hm5C_associated_SNPs_18738 0 0 1 0 1 PLP2 chrX:49031021 3'AG 49031021 Downstream 8bp
chr11 125513714 125513714 1 + G A CESC 125513698 + 125513678 125513718 41 CTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGT CTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGATGGT < 41bp 1 0.261962316555723 1 0.259312987327576 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513698 chr11:125513714 nonsynonymous SNV 0.926 0 37 hm5C_associated_SNPs_18739 0 0 1 2 2 CHEK1 chr11:125513687 3'AG 125513687 Downstream 28bp
chr11 125513714 125513714 1 + G A CESC 125513698 + 125513678 125513718 41 CTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGT CTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGATGGT < 41bp 1 0.261962316555723 1 0.259312987327576 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513698 chr11:125513714 nonsynonymous SNV 0.926 0 37 hm5C_associated_SNPs_18739 0 0 1 2 2 CHEK1 chr11:125513795 5'GT 125513795 Upstream 82bp
chr11 125513714 125513714 1 + G A CESC 125513699 + 125513679 125513719 41 TTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTG TTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGATGGTG < 41bp 1 0.659326729908489 1 0.395488500595093 experiment 0.681346540183021 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513699 chr11:125513714 nonsynonymous SNV 0.926 0 36 hm5C_associated_SNPs_18740 0 0 1 2 2 CHEK1 chr11:125513687 3'AG 125513687 Downstream 28bp
chr11 125513714 125513714 1 + G A CESC 125513699 + 125513679 125513719 41 TTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTG TTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGATGGTG < 41bp 1 0.659326729908489 1 0.395488500595093 experiment 0.681346540183021 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513699 chr11:125513714 nonsynonymous SNV 0.926 0 36 hm5C_associated_SNPs_18740 0 0 1 2 2 CHEK1 chr11:125513795 5'GT 125513795 Upstream 82bp
chr11 125513714 125513714 1 + G A CESC 125513700 + 125513680 125513720 41 TTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGT TTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGATGGTGT < 41bp 1 0.104773726080322 1 0.168052792549133 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513700 chr11:125513714 nonsynonymous SNV 0.926 0 35 hm5C_associated_SNPs_18741 0 0 1 2 2 CHEK1 chr11:125513687 3'AG 125513687 Downstream 28bp
chr11 125513714 125513714 1 + G A CESC 125513700 + 125513680 125513720 41 TTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGT TTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGATGGTGT < 41bp 1 0.104773726080322 1 0.168052792549133 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513700 chr11:125513714 nonsynonymous SNV 0.926 0 35 hm5C_associated_SNPs_18741 0 0 1 2 2 CHEK1 chr11:125513795 5'GT 125513795 Upstream 82bp
chr11 125513714 125513714 1 + G A CESC 125513701 + 125513681 125513721 41 TTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGTG TTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGATGGTGTG < 41bp 1 0.401436469656583 1 0.444914638996124 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513701 chr11:125513714 nonsynonymous SNV 0.926 0 34 hm5C_associated_SNPs_18742 0 0 1 2 2 CHEK1 chr11:125513687 3'AG 125513687 Downstream 28bp
chr11 125513714 125513714 1 + G A CESC 125513701 + 125513681 125513721 41 TTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGTG TTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGATGGTGTG < 41bp 1 0.401436469656583 1 0.444914638996124 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513701 chr11:125513714 nonsynonymous SNV 0.926 0 34 hm5C_associated_SNPs_18742 0 0 1 2 2 CHEK1 chr11:125513795 5'GT 125513795 Upstream 82bp
chr3 124053174 124053174 1 + C T CESC 124053164 + 124053144 124053184 41 GCTGCAGCGGCCCCTGAGCCCTGGGAACTCCGAATCCCTCA GCTGCAGCGGCCCCTGAGCCCTGGGAACTCTGAATCCCTCA < 41bp 1 0.615362336292554 1 0.856001377105713 experiment 0.769275327414892 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KALRN ENSG00000160145 CDS Human protein_coding chr3:124053164 chr3:124053174 synonymous SNV . 0 31 hm5C_associated_SNPs_18743 0 0 0 0 1 KALRN chr3:124053112 3'AG 124053112 Downstream 63bp
chr7 4796655 4796655 1 + C T CESC 4796673 + 4796653 4796693 41 ACCGTTACTTTATCAAAGTCCCACGTTCCCAGGAGGAGCCT ACTGTTACTTTATCAAAGTCCCACGTTCCCAGGAGGAGCCT < 41bp 1 0.107196766464089 1 0.0534426271915436 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4796673 chr7:4796655 nonsynonymous SNV 1.000 5 3 hm5C_associated_SNPs_18745 0 0 1 0 1 FOXK1 chr7:4796625 3'AG 4796625 Downstream 31bp
chr3 47046767 47046767 1 + C T CESC 47046776 + 47046756 47046796 41 TACCTCATCCGCGTGGAGCCCTTCACCTCCCTGCACGTCCA TACCTCATCCGTGTGGAGCCCTTCACCTCCCTGCACGTCCA < 41bp 1 0.217378066636128 1 0.301136195659637 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47046776 chr3:47046767 synonymous SNV . 0 12 hm5C_associated_SNPs_18746 0 0 1 0 2 NBEAL2 chr3:47046671 3'AG 47046671 Downstream 97bp
chr3 47046767 47046767 1 + C T CESC 47046776 + 47046756 47046796 41 TACCTCATCCGCGTGGAGCCCTTCACCTCCCTGCACGTCCA TACCTCATCCGTGTGGAGCCCTTCACCTCCCTGCACGTCCA < 41bp 1 0.217378066636128 1 0.301136195659637 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47046776 chr3:47046767 synonymous SNV . 0 12 hm5C_associated_SNPs_18746 0 0 1 0 2 NBEAL2 chr3:47046811 5'GT 47046811 Upstream 45bp
chr20 39795150 39795150 1 + G A CESC 39795148 + 39795128 39795168 41 GAGCCTGACCAGAGCACAGGCTGAGCACATGCTAATGCGCG GAGCCTGACCAGAGCACAGGCTAAGCACATGCTAATGCGCG < 41bp 1 0.230628518228716 1 0.0787512362003326 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39795148 chr20:39795150 nonsynonymous SNV 0.878 5 23 hm5C_associated_SNPs_18747 0 0 0 0 2 PLCG1 chr20:39795116 3'AG 39795116 Downstream 35bp
chr20 39795150 39795150 1 + G A CESC 39795148 + 39795128 39795168 41 GAGCCTGACCAGAGCACAGGCTGAGCACATGCTAATGCGCG GAGCCTGACCAGAGCACAGGCTAAGCACATGCTAATGCGCG < 41bp 1 0.230628518228716 1 0.0787512362003326 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39795148 chr20:39795150 nonsynonymous SNV 0.878 5 23 hm5C_associated_SNPs_18747 0 0 0 0 2 PLCG1 chr20:39795235 5'GT 39795235 Upstream 86bp
chr10 116603647 116603647 1 + C T CESC 116603627 + 116603607 116603647 41 ACTGACAGACAGACTTGCCTCCCTGTACAAGGCCCTACCTC ACTGACAGACAGACTTGCCTCCCTGTACAAGGCCCTACCTT < 41bp 1 0.400361459836003 1 0.356354922056198 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM160B1 ENSG00000151553 CDS Human protein_coding chr10:116603627 chr10:116603647 stopgain 0.999 1 41 hm5C_associated_SNPs_18748 0 0 1 0 1 FAM160B1 chr10:116603696 5'GT 116603696 Upstream 50bp
chr20 62521244 62521244 1 + C T CESC 62521246 + 62521226 62521266 41 GAACGGCAGTGACAACCTCCCTTCCTCAGCGGGGAGTGGTG GAACGGCAGTGACAACCTTCCTTCCTCAGCGGGGAGTGGTG < 41bp 1 0.22456006147591 1 0.0657103061676025 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TPD52L2 ENSG00000101150 CDS Human protein_coding chr20:62521246 chr20:62521244 synonymous SNV 0.046 0 19 hm5C_associated_SNPs_18749 0 0 1 0 1 TPD52L2 chr20:62521203 3'AG 62521203 Downstream 42bp
chr19 46026015 46026015 1 + G A CESC 46026006 + 46025986 46026026 41 CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGA CCTCAGGGGGGCCCACAGCCCCCAAAGCTAAGAGTGGTCGA < 41bp 1 0.605800628732258 1 0.403211891651154 experiment 0.788398742535484 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026006 chr19:46026015 nonsynonymous SNV 0.651 0 30 hm5C_associated_SNPs_18751 0 0 1 0 3 VASP chr19:46025976 3'AG 46025976 Downstream 40bp
chr19 46026015 46026015 1 + G A CESC 46026006 + 46025986 46026026 41 CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGA CCTCAGGGGGGCCCACAGCCCCCAAAGCTAAGAGTGGTCGA < 41bp 1 0.605800628732258 1 0.403211891651154 experiment 0.788398742535484 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026006 chr19:46026015 nonsynonymous SNV 0.651 0 30 hm5C_associated_SNPs_18751 0 0 1 0 3 VASP chr19:46025979 3'AG 46025979 Downstream 37bp
chr19 46026015 46026015 1 + G A CESC 46026006 + 46025986 46026026 41 CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGA CCTCAGGGGGGCCCACAGCCCCCAAAGCTAAGAGTGGTCGA < 41bp 1 0.605800628732258 1 0.403211891651154 experiment 0.788398742535484 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026006 chr19:46026015 nonsynonymous SNV 0.651 0 30 hm5C_associated_SNPs_18751 0 0 1 0 3 VASP chr19:46026076 5'GT 46026076 Upstream 62bp
chr19 46026015 46026015 1 + G A CESC 46026007 + 46025987 46026027 41 CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAA CTCAGGGGGGCCCACAGCCCCCAAAGCTAAGAGTGGTCGAA < 41bp 1 0.36274536757629 1 0.2406947016716 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026007 chr19:46026015 nonsynonymous SNV 0.651 0 29 hm5C_associated_SNPs_18752 0 0 1 0 3 VASP chr19:46025976 3'AG 46025976 Downstream 40bp
chr19 46026015 46026015 1 + G A CESC 46026007 + 46025987 46026027 41 CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAA CTCAGGGGGGCCCACAGCCCCCAAAGCTAAGAGTGGTCGAA < 41bp 1 0.36274536757629 1 0.2406947016716 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026007 chr19:46026015 nonsynonymous SNV 0.651 0 29 hm5C_associated_SNPs_18752 0 0 1 0 3 VASP chr19:46025979 3'AG 46025979 Downstream 37bp
chr19 46026015 46026015 1 + G A CESC 46026007 + 46025987 46026027 41 CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAA CTCAGGGGGGCCCACAGCCCCCAAAGCTAAGAGTGGTCGAA < 41bp 1 0.36274536757629 1 0.2406947016716 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026007 chr19:46026015 nonsynonymous SNV 0.651 0 29 hm5C_associated_SNPs_18752 0 0 1 0 3 VASP chr19:46026076 5'GT 46026076 Upstream 62bp
chr19 46026015 46026015 1 + G A CESC 46026008 + 46025988 46026028 41 TCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAAG TCAGGGGGGCCCACAGCCCCCAAAGCTAAGAGTGGTCGAAG < 41bp 1 0.492089694807072 1 0.610448360443115 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026008 chr19:46026015 nonsynonymous SNV 0.651 0 28 hm5C_associated_SNPs_18753 0 0 1 0 3 VASP chr19:46025976 3'AG 46025976 Downstream 40bp
chr19 46026015 46026015 1 + G A CESC 46026008 + 46025988 46026028 41 TCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAAG TCAGGGGGGCCCACAGCCCCCAAAGCTAAGAGTGGTCGAAG < 41bp 1 0.492089694807072 1 0.610448360443115 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026008 chr19:46026015 nonsynonymous SNV 0.651 0 28 hm5C_associated_SNPs_18753 0 0 1 0 3 VASP chr19:46025979 3'AG 46025979 Downstream 37bp
chr19 46026015 46026015 1 + G A CESC 46026008 + 46025988 46026028 41 TCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAAG TCAGGGGGGCCCACAGCCCCCAAAGCTAAGAGTGGTCGAAG < 41bp 1 0.492089694807072 1 0.610448360443115 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026008 chr19:46026015 nonsynonymous SNV 0.651 0 28 hm5C_associated_SNPs_18753 0 0 1 0 3 VASP chr19:46026076 5'GT 46026076 Upstream 62bp
chr1 144014055 144014055 1 + C G CESC 144014050 + 144014030 144014070 41 ACCTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGC ACCTGGAGAAGCTGGCAGAACGCTTGCTGGCCAAGACATGC < 41bp 1 0.267985582815682 1 0.248406410217285 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014050 chr1:144014055 . 0.780 2 26 hm5C_associated_SNPs_18754 0 0 1 0 1 FAM72C;NBPF20 chr1:144014093 5'GT 144014093 Upstream 39bp
chr1 144014055 144014055 1 + C G CESC 144014052 + 144014032 144014072 41 CTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGCAG CTGGAGAAGCTGGCAGAACGCTTGCTGGCCAAGACATGCAG < 41bp 1 0.389411353669805 1 0.473973959684372 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014052 chr1:144014055 . 0.780 2 24 hm5C_associated_SNPs_18755 0 0 1 0 1 FAM72C;NBPF20 chr1:144014093 5'GT 144014093 Upstream 39bp
chr19 45375367 45375367 1 + G A CESC 45375373 + 45375353 45375393 41 AGCATGAGAGCTTCGAGGAACCAGCCCTGATACCTGTGACC AGCATGAGAGCTTCAAGGAACCAGCCCTGATACCTGTGACC < 41bp 1 0.0636318822190811 1 0.554713845252991 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45375373 chr19:45375367 nonsynonymous SNV 0.751 0 15 hm5C_associated_SNPs_18757 0 0 1 0 1 NECTIN2 chr19:45375406 5'GT 45375406 Upstream 40bp
chr19 45375367 45375367 1 + G A CESC 45375374 + 45375354 45375394 41 GCATGAGAGCTTCGAGGAACCAGCCCTGATACCTGTGACCC GCATGAGAGCTTCAAGGAACCAGCCCTGATACCTGTGACCC < 41bp 1 0.389442428133008 1 0.640723466873169 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45375374 chr19:45375367 nonsynonymous SNV 0.751 0 14 hm5C_associated_SNPs_18758 0 0 1 0 1 NECTIN2 chr19:45375406 5'GT 45375406 Upstream 40bp
chr19 2271912 2271912 1 + C G CESC 2271919 + 2271899 2271939 41 GCAGCCTCTACATCGAGATCCCGGGCGGCGCGCTGCCCGAG GCAGCCTCTACATGGAGATCCCGGGCGGCGCGCTGCCCGAG < 41bp 1 0.73620620626854 1 0.856429398059845 experiment 0.527587587462921 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control OAZ1 ENSG00000104904 CDS Human protein_coding chr19:2271919 chr19:2271912 nonsynonymous SNV 0.969 2 14 hm5C_associated_SNPs_18759 0 0 1 0 1 OAZ1 chr19:2271953 5'GT 2271953 Upstream 42bp
chr8 95885647 95885647 1 + G A CESC 95885659 + 95885639 95885679 41 CCAGGCAGGAGCTGTGTGTTCTGACTTCTTTAACAAGGCTG CCAGGCAGAAGCTGTGTGTTCTGACTTCTTTAACAAGGCTG < 41bp 1 0.548286351038588 1 0.183960735797882 experiment 0.903427297922824 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INTS8 ENSG00000164941 CDS Human protein_coding chr8:95885659 chr8:95885647 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_18760 0 0 1 0 2 INTS8 chr8:95885602 3'AG 95885602 Downstream 46bp
chr8 95885647 95885647 1 + G A CESC 95885659 + 95885639 95885679 41 CCAGGCAGGAGCTGTGTGTTCTGACTTCTTTAACAAGGCTG CCAGGCAGAAGCTGTGTGTTCTGACTTCTTTAACAAGGCTG < 41bp 1 0.548286351038588 1 0.183960735797882 experiment 0.903427297922824 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INTS8 ENSG00000164941 CDS Human protein_coding chr8:95885659 chr8:95885647 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_18760 0 0 1 0 2 INTS8 chr8:95885705 5'GT 95885705 Upstream 59bp
chr20 44571761 44571761 1 + C G CESC 44571747 + 44571727 44571767 41 GTCCTGCAGGCATTGAGCCTCCACGGGAGTCTTTCAACCGC GTCCTGCAGGCATTGAGCCTCCACGGGAGTCTTTGAACCGC < 41bp 1 0.35689408993787 1 0.521793127059937 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44571747 chr20:44571761 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_18761 0 0 1 0 1 PCIF1 chr20:44571736 3'AG 44571736 Downstream 26bp
chr3 40553908 40553908 1 + C T CESC 40553898 + 40553878 40553918 41 TTTCTCCCTGGGCAGCATTCCCATTCACCACGCCTGTTCTG TTTCTCCCTGGGCAGCATTCCCATTCACCATGCCTGTTCTG < 41bp 1 0.0865093460418472 1 0.135357558727264 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF620 ENSG00000177842 CDS Human protein_coding chr3:40553898 chr3:40553908 nonsynonymous SNV 0.440 1 31 hm5C_associated_SNPs_18762 0 0 0 0 2 ZNF620 chr3:40553893 3'AG 40553893 Downstream 16bp
chr3 40553908 40553908 1 + C T CESC 40553898 + 40553878 40553918 41 TTTCTCCCTGGGCAGCATTCCCATTCACCACGCCTGTTCTG TTTCTCCCTGGGCAGCATTCCCATTCACCATGCCTGTTCTG < 41bp 1 0.0865093460418472 1 0.135357558727264 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF620 ENSG00000177842 CDS Human protein_coding chr3:40553898 chr3:40553908 nonsynonymous SNV 0.440 1 31 hm5C_associated_SNPs_18762 0 0 0 0 2 ZNF620 chr3:40554006 5'GT 40554006 Upstream 99bp
chr21 45733844 45733844 1 + C T CESC 45733862 + 45733842 45733882 41 TTCATCCCCGAGGCTCCACCCGAGGACGGCTGGGAGAACTT TTTATCCCCGAGGCTCCACCCGAGGACGGCTGGGAGAACTT < 41bp 1 0.719666196039286 1 0.854218006134033 experiment 0.560667607921428 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45733862 chr21:45733844 synonymous SNV . 0 3 hm5C_associated_SNPs_18763 0 0 1 0 2 PFKL chr21:45733796 3'AG 45733796 Downstream 49bp
chr21 45733844 45733844 1 + C T CESC 45733862 + 45733842 45733882 41 TTCATCCCCGAGGCTCCACCCGAGGACGGCTGGGAGAACTT TTTATCCCCGAGGCTCCACCCGAGGACGGCTGGGAGAACTT < 41bp 1 0.719666196039286 1 0.854218006134033 experiment 0.560667607921428 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45733862 chr21:45733844 synonymous SNV . 0 3 hm5C_associated_SNPs_18763 0 0 1 0 2 PFKL chr21:45733904 5'GT 45733904 Upstream 61bp
chr19 50335586 50335586 1 + C T CESC 50335577 + 50335557 50335597 41 TCCCGCAGACCACCCTGGGCCCTTTGTTCCGGAACTCAAGG TCCCGCAGACCACCCTGGGCCCTTTGTTCTGGAACTCAAGG < 41bp 1 0.0129100996088081 1 0.0129997432231903 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50335577 chr19:50335586 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_18764 0 0 1 0 2 MED25 chr19:50335565 3'AG 50335565 Downstream 22bp
chr19 50335586 50335586 1 + C T CESC 50335577 + 50335557 50335597 41 TCCCGCAGACCACCCTGGGCCCTTTGTTCCGGAACTCAAGG TCCCGCAGACCACCCTGGGCCCTTTGTTCTGGAACTCAAGG < 41bp 1 0.0129100996088081 1 0.0129997432231903 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50335577 chr19:50335586 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_18764 0 0 1 0 2 MED25 chr19:50335672 5'GT 50335672 Upstream 87bp
chr16 15675126 15675126 1 + G T CESC 15675136 + 15675116 15675156 41 TAATCCAGAAGATCCACAAACTGGTGCAGAAGAGAGACTTC TAATCCAGAATATCCACAAACTGGTGCAGAAGAGAGACTTC < 41bp 1 0.638448728317708 1 0.212799161672592 experiment 0.723102543364583 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control C16orf45 ENSG00000166780 CDS Human protein_coding chr16:15675136 chr16:15675126 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_18767 0 0 0 0 2 C16orf45 chr16:15675074 3'AG 15675074 Downstream 53bp
chr16 15675126 15675126 1 + G T CESC 15675136 + 15675116 15675156 41 TAATCCAGAAGATCCACAAACTGGTGCAGAAGAGAGACTTC TAATCCAGAATATCCACAAACTGGTGCAGAAGAGAGACTTC < 41bp 1 0.638448728317708 1 0.212799161672592 experiment 0.723102543364583 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control C16orf45 ENSG00000166780 CDS Human protein_coding chr16:15675136 chr16:15675126 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_18767 0 0 0 0 2 C16orf45 chr16:15675188 5'GT 15675188 Upstream 63bp
chr7 40102510 40102510 1 + G T CESC 40102521 + 40102501 40102541 41 CCAGCCATTGATGTATGGAGCTGTGGGTAAGATAGCCTTAT CCAGCCATTTATGTATGGAGCTGTGGGTAAGATAGCCTTAT < 41bp 1 0.207281433046638 1 0.372557938098907 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:40102521 chr7:40102510 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_18768 0 0 1 0 2 CDK13 chr7:40102425 3'AG 40102425 Downstream 86bp
chr7 40102510 40102510 1 + G T CESC 40102521 + 40102501 40102541 41 CCAGCCATTGATGTATGGAGCTGTGGGTAAGATAGCCTTAT CCAGCCATTTATGTATGGAGCTGTGGGTAAGATAGCCTTAT < 41bp 1 0.207281433046638 1 0.372557938098907 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:40102521 chr7:40102510 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_18768 0 0 1 0 2 CDK13 chr7:40102526 5'GT 40102526 Upstream 17bp
chr13 76415797 76415797 1 + C G CESC 76415812 + 76415792 76415832 41 TGTCTCTGACCACACGGGAGCCCTCTCTTGCCACCTGGGAA TGTCTGTGACCACACGGGAGCCCTCTCTTGCCACCTGGGAA < 41bp 1 0.0417250254812831 1 0.0341167151927948 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76415812 chr13:76415797 nonsynonymous SNV 0.607 0 6 hm5C_associated_SNPs_18769 0 0 1 0 1 LMO7 chr13:76415764 3'AG 76415764 Downstream 34bp
chr13 76415797 76415797 1 + C G CESC 76415814 + 76415794 76415834 41 TCTCTGACCACACGGGAGCCCTCTCTTGCCACCTGGGAAGC TCTGTGACCACACGGGAGCCCTCTCTTGCCACCTGGGAAGC < 41bp 1 0.222319084902163 1 0.122059613466263 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76415814 chr13:76415797 nonsynonymous SNV 0.607 0 4 hm5C_associated_SNPs_18770 0 0 1 0 1 LMO7 chr13:76415764 3'AG 76415764 Downstream 34bp
chr2 232576627 232576627 1 + G C CESC 232576625 + 232576605 232576645 41 GGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAG GGAAAATGGGGAGCAGGAGGCTCACAATGAGGTAGACGAAG < 41bp 1 0.274461875227498 1 0.163092166185379 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232576625 chr2:232576627 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_18773 0 0 1 0 3 PTMA chr2:232576597 3'AG 232576597 Downstream 31bp
chr2 232576627 232576627 1 + G C CESC 232576625 + 232576605 232576645 41 GGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAG GGAAAATGGGGAGCAGGAGGCTCACAATGAGGTAGACGAAG < 41bp 1 0.274461875227498 1 0.163092166185379 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232576625 chr2:232576627 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_18773 0 0 1 0 3 PTMA chr2:232576600 3'AG 232576600 Downstream 28bp
chr2 232576627 232576627 1 + G C CESC 232576625 + 232576605 232576645 41 GGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAG GGAAAATGGGGAGCAGGAGGCTCACAATGAGGTAGACGAAG < 41bp 1 0.274461875227498 1 0.163092166185379 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232576625 chr2:232576627 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_18773 0 0 1 0 3 PTMA chr2:232576693 5'GT 232576693 Upstream 67bp
chr2 232576627 232576627 1 + G C CESC 232576641 + 232576621 232576661 41 GAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGG GAGGCTCACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGG < 41bp 1 0.489879295201845 1 0.373368680477142 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232576641 chr2:232576627 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_18774 0 0 1 0 3 PTMA chr2:232576597 3'AG 232576597 Downstream 31bp
chr2 232576627 232576627 1 + G C CESC 232576641 + 232576621 232576661 41 GAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGG GAGGCTCACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGG < 41bp 1 0.489879295201845 1 0.373368680477142 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232576641 chr2:232576627 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_18774 0 0 1 0 3 PTMA chr2:232576600 3'AG 232576600 Downstream 28bp
chr2 232576627 232576627 1 + G C CESC 232576641 + 232576621 232576661 41 GAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGG GAGGCTCACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGG < 41bp 1 0.489879295201845 1 0.373368680477142 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232576641 chr2:232576627 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_18774 0 0 1 0 3 PTMA chr2:232576693 5'GT 232576693 Upstream 67bp
chr2 241516041 241516041 1 + G C CESC 241516046 + 241516026 241516066 41 CTGACCCGGCCCGTGGAGGCCCTTTTCCAGCTGTGGACCGC CTGACCCGGCCCGTGCAGGCCCTTTTCCAGCTGTGGACCGC < 41bp 1 0.0373050949569897 1 0.0211678147315979 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241516046 chr2:241516041 nonsynonymous SNV 0.766 1 16 hm5C_associated_SNPs_18776 0 0 1 0 2 RNPEPL1 chr2:241515952 3'AG 241515952 Downstream 90bp
chr2 241516041 241516041 1 + G C CESC 241516046 + 241516026 241516066 41 CTGACCCGGCCCGTGGAGGCCCTTTTCCAGCTGTGGACCGC CTGACCCGGCCCGTGCAGGCCCTTTTCCAGCTGTGGACCGC < 41bp 1 0.0373050949569897 1 0.0211678147315979 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241516046 chr2:241516041 nonsynonymous SNV 0.766 1 16 hm5C_associated_SNPs_18776 0 0 1 0 2 RNPEPL1 chr2:241515985 3'AG 241515985 Downstream 57bp
chr2 241516041 241516041 1 + G C CESC 241516052 + 241516032 241516072 41 CGGCCCGTGGAGGCCCTTTTCCAGCTGTGGACCGCAGAACC CGGCCCGTGCAGGCCCTTTTCCAGCTGTGGACCGCAGAACC < 41bp 1 0.46015279793541 1 0.743715524673462 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241516052 chr2:241516041 nonsynonymous SNV 0.766 1 10 hm5C_associated_SNPs_18777 0 0 1 0 2 RNPEPL1 chr2:241515952 3'AG 241515952 Downstream 90bp
chr2 241516041 241516041 1 + G C CESC 241516052 + 241516032 241516072 41 CGGCCCGTGGAGGCCCTTTTCCAGCTGTGGACCGCAGAACC CGGCCCGTGCAGGCCCTTTTCCAGCTGTGGACCGCAGAACC < 41bp 1 0.46015279793541 1 0.743715524673462 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241516052 chr2:241516041 nonsynonymous SNV 0.766 1 10 hm5C_associated_SNPs_18777 0 0 1 0 2 RNPEPL1 chr2:241515985 3'AG 241515985 Downstream 57bp
chr3 50614558 50614558 1 + C G CESC 50614550 + 50614530 50614570 41 TGTGGGATCCCCAGGCAGCCCCCTCATTCTGGAGGTGGGCT TGTGGGATCCCCAGGCAGCCCCCTCATTGTGGAGGTGGGCT < 41bp 1 0.0484148754270731 1 0.166217029094696 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614550 chr3:50614558 nonsynonymous SNV 0.991 4 29 hm5C_associated_SNPs_18779 0 0 0 0 2 HEMK1 chr3:50614483 3'AG 50614483 Downstream 76bp
chr3 50614558 50614558 1 + C G CESC 50614550 + 50614530 50614570 41 TGTGGGATCCCCAGGCAGCCCCCTCATTCTGGAGGTGGGCT TGTGGGATCCCCAGGCAGCCCCCTCATTGTGGAGGTGGGCT < 41bp 1 0.0484148754270731 1 0.166217029094696 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614550 chr3:50614558 nonsynonymous SNV 0.991 4 29 hm5C_associated_SNPs_18779 0 0 0 0 2 HEMK1 chr3:50614617 5'GT 50614617 Upstream 60bp
chr3 50614558 50614558 1 + C G CESC 50614569 + 50614549 50614589 41 CCCCTCATTCTGGAGGTGGGCTGCGGATCAGGAGCCATCTC CCCCTCATTGTGGAGGTGGGCTGCGGATCAGGAGCCATCTC < 41bp 1 0.74453248571337 1 0.134283483028412 experiment 0.51093502857326 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614569 chr3:50614558 nonsynonymous SNV 0.991 4 10 hm5C_associated_SNPs_18780 0 0 0 0 2 HEMK1 chr3:50614483 3'AG 50614483 Downstream 76bp
chr3 50614558 50614558 1 + C G CESC 50614569 + 50614549 50614589 41 CCCCTCATTCTGGAGGTGGGCTGCGGATCAGGAGCCATCTC CCCCTCATTGTGGAGGTGGGCTGCGGATCAGGAGCCATCTC < 41bp 1 0.74453248571337 1 0.134283483028412 experiment 0.51093502857326 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614569 chr3:50614558 nonsynonymous SNV 0.991 4 10 hm5C_associated_SNPs_18780 0 0 0 0 2 HEMK1 chr3:50614617 5'GT 50614617 Upstream 60bp
chr16 29993184 29993184 1 + G C CESC 29993182 + 29993162 29993202 41 CCCTCCTGTGACTTTCAGGTCTGAGTACTTCCGGAATTTTG CCCTCCTGTGACTTTCAGGTCTCAGTACTTCCGGAATTTTG < 41bp 1 0.274699289904619 1 0.134513914585114 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29993182 chr16:29993184 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_18787 0 0 1 0 2 TAOK2 chr16:29993180 3'AG 29993180 Downstream 5bp
chr16 29993184 29993184 1 + G C CESC 29993182 + 29993162 29993202 41 CCCTCCTGTGACTTTCAGGTCTGAGTACTTCCGGAATTTTG CCCTCCTGTGACTTTCAGGTCTCAGTACTTCCGGAATTTTG < 41bp 1 0.274699289904619 1 0.134513914585114 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29993182 chr16:29993184 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_18787 0 0 1 0 2 TAOK2 chr16:29993261 5'GT 29993261 Upstream 78bp
chr6 25551207 25551207 1 + C T CESC 25551227 + 25551207 25551247 41 CGACAAGACTTGATTCATGCCAGCACCGAAAAGATTTCTAT TGACAAGACTTGATTCATGCCAGCACCGAAAAGATTTCTAT < 41bp 1 0.450666234532163 1 0.409624516963959 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25551227 chr6:25551207 stopgain 0.990 1 1 hm5C_associated_SNPs_18788 0 0 0 0 1 CARMIL1 chr6:25551138 3'AG 25551138 Downstream 70bp
chr16 67572590 67572590 1 + C T CESC 67572603 + 67572583 67572623 41 CGGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCG CGGTCTTTAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCG < 41bp 1 0.0851063116262902 1 0.197455257177353 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572603 chr16:67572590 synonymous SNV . 0 8 hm5C_associated_SNPs_18790 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 28bp
chr16 67572590 67572590 1 + C T CESC 67572603 + 67572583 67572623 41 CGGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCG CGGTCTTTAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCG < 41bp 1 0.0851063116262902 1 0.197455257177353 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572603 chr16:67572590 synonymous SNV . 0 8 hm5C_associated_SNPs_18790 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 16bp
chr16 67572590 67572590 1 + C T CESC 67572604 + 67572584 67572624 41 GGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGC GGTCTTTAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGC < 41bp 1 0.517940255258228 1 0.516025364398956 experiment 0.964119489483544 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572604 chr16:67572590 synonymous SNV . 0 7 hm5C_associated_SNPs_18791 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 28bp
chr16 67572590 67572590 1 + C T CESC 67572604 + 67572584 67572624 41 GGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGC GGTCTTTAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGC < 41bp 1 0.517940255258228 1 0.516025364398956 experiment 0.964119489483544 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572604 chr16:67572590 synonymous SNV . 0 7 hm5C_associated_SNPs_18791 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 16bp
chr16 67572590 67572590 1 + C T CESC 67572605 + 67572585 67572625 41 GTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCT GTCTTTAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCT < 41bp 1 0.157043024838419 1 0.358241617679596 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572605 chr16:67572590 synonymous SNV . 0 6 hm5C_associated_SNPs_18792 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 28bp
chr16 67572590 67572590 1 + C T CESC 67572605 + 67572585 67572625 41 GTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCT GTCTTTAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCT < 41bp 1 0.157043024838419 1 0.358241617679596 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572605 chr16:67572590 synonymous SNV . 0 6 hm5C_associated_SNPs_18792 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 16bp
chr16 67572590 67572590 1 + C T CESC 67572606 + 67572586 67572626 41 TCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTC TCTTTAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTC < 41bp 1 0.469222041382753 1 0.4205062687397 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572606 chr16:67572590 synonymous SNV . 0 5 hm5C_associated_SNPs_18793 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 28bp
chr16 67572590 67572590 1 + C T CESC 67572606 + 67572586 67572626 41 TCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTC TCTTTAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTC < 41bp 1 0.469222041382753 1 0.4205062687397 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572606 chr16:67572590 synonymous SNV . 0 5 hm5C_associated_SNPs_18793 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 16bp
chr16 67572590 67572590 1 + C T CESC 67572607 + 67572587 67572627 41 CTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTCT CTTTAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTCT < 41bp 1 0.798013482862225 1 0.765245795249939 experiment 0.403973034275551 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572607 chr16:67572590 synonymous SNV . 0 4 hm5C_associated_SNPs_18794 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 28bp
chr16 67572590 67572590 1 + C T CESC 67572607 + 67572587 67572627 41 CTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTCT CTTTAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTCT < 41bp 1 0.798013482862225 1 0.765245795249939 experiment 0.403973034275551 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572607 chr16:67572590 synonymous SNV . 0 4 hm5C_associated_SNPs_18794 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 16bp
chr11 8934037 8934037 1 + G C CESC 8934032 + 8934012 8934052 41 CCCCCAACCCTTAGTGCTTCCTTCAGAACAATGGCTGAATT CCCCCAACCCTTAGTGCTTCCTTCACAACAATGGCTGAATT < 41bp 1 0.411129454104965 1 0.380454123020172 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKIP1 ENSG00000166452 CDS Human protein_coding chr11:8934032 chr11:8934037 nonsynonymous SNV 0.995 2 26 hm5C_associated_SNPs_18796 0 0 1 0 2 AKIP1 chr11:8934000 3'AG 8934000 Downstream 38bp
chr11 8934037 8934037 1 + G C CESC 8934032 + 8934012 8934052 41 CCCCCAACCCTTAGTGCTTCCTTCAGAACAATGGCTGAATT CCCCCAACCCTTAGTGCTTCCTTCACAACAATGGCTGAATT < 41bp 1 0.411129454104965 1 0.380454123020172 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKIP1 ENSG00000166452 CDS Human protein_coding chr11:8934032 chr11:8934037 nonsynonymous SNV 0.995 2 26 hm5C_associated_SNPs_18796 0 0 1 0 2 AKIP1 chr11:8934080 5'GT 8934080 Upstream 44bp
chr2 173451093 173451093 1 + G C CESC 173451098 + 173451078 173451118 41 CCAAGACCTCGTGTTGAGACCTCCCGCGCAGTGCCTCTGGT CCAAGACCTCGTGTTCAGACCTCCCGCGCAGTGCCTCTGGT < 41bp 1 0.338453965739047 1 0.521596968173981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK1 ENSG00000152256 CDS Human protein_coding chr2:173451098 chr2:173451093 nonsynonymous SNV 0.989 1 16 hm5C_associated_SNPs_18797 0 0 1 0 2 PDK1 chr2:173451006 3'AG 173451006 Downstream 88bp
chr2 173451093 173451093 1 + G C CESC 173451098 + 173451078 173451118 41 CCAAGACCTCGTGTTGAGACCTCCCGCGCAGTGCCTCTGGT CCAAGACCTCGTGTTCAGACCTCCCGCGCAGTGCCTCTGGT < 41bp 1 0.338453965739047 1 0.521596968173981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK1 ENSG00000152256 CDS Human protein_coding chr2:173451098 chr2:173451093 nonsynonymous SNV 0.989 1 16 hm5C_associated_SNPs_18797 0 0 1 0 2 PDK1 chr2:173451116 5'GT 173451116 Upstream 24bp
chr8 22064467 22064467 1 + C A CESC 22064464 + 22064444 22064484 41 AAGGAGTGCACGTGGGCCATCTCCAGCACCCCCGGGCACCG AAGGAGTGCACGTGGGCCATCTCAAGCACCCCCGGGCACCG < 41bp 1 0.651132228971376 1 0.438963085412979 experiment 0.697735542057248 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22064464 chr8:22064467 synonymous SNV . 0 24 hm5C_associated_SNPs_18798 0 0 1 0 1 BMP1 chr8:22064494 5'GT 22064494 Upstream 28bp
chr21 45483604 45483604 1 + G T CESC 45483598 + 45483578 45483618 41 TGCTGCTCTTCCTGCAGAGGCCGTGGGAGGTGGCCCAGCGC TGCTGCTCTTCCTGCAGAGGCCGTGGTAGGTGGCCCAGCGC < 41bp 1 0.395432548722284 1 0.473667979240417 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45483598 chr21:45483604 stopgain 1.000 1 27 hm5C_associated_SNPs_18799 0 0 1 0 1 TRAPPC10 chr21:45483666 5'GT 45483666 Upstream 63bp
chrX 68059873 68059873 1 + G A CESC 68059888 + 68059868 68059908 41 GTCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT GTCAAAATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT < 41bp 1 0.171004497084437 1 0.0597743093967438 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059888 chrX:68059873 synonymous SNV . 0 6 hm5C_associated_SNPs_18800 0 0 0 0 2 EFNB1 chrX:68059803 3'AG 68059803 Downstream 71bp
chrX 68059873 68059873 1 + G A CESC 68059888 + 68059868 68059908 41 GTCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT GTCAAAATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT < 41bp 1 0.171004497084437 1 0.0597743093967438 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059888 chrX:68059873 synonymous SNV . 0 6 hm5C_associated_SNPs_18800 0 0 0 0 2 EFNB1 chrX:68059931 5'GT 68059931 Upstream 59bp
chr3 169985710 169985710 1 + C G CESC 169985728 + 169985708 169985748 41 ATCTACCGTAGAGGTGCACGCCGCTGGAGAAAGCTTTATTG ATGTACCGTAGAGGTGCACGCCGCTGGAGAAAGCTTTATTG < 41bp 1 0.432656000437124 1 0.351053059101105 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:169985728 chr3:169985710 nonsynonymous SNV 0.989 2 3 hm5C_associated_SNPs_18801 0 0 1 0 1 PRKCI chr3:169985703 3'AG 169985703 Downstream 8bp
chr2 3623257 3623257 1 + G C CESC 3623246 + 3623226 3623266 41 GAAGCCCAATGGCGAGAAGCCGGACGAGTTCGAGTCCGGCA GAAGCCCAATGGCGAGAAGCCGGACGAGTTCCAGTCCGGCA < 41bp 1 0.736348129195413 1 0.43370133638382 experiment 0.527303741609175 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RPS7 ENSG00000171863 CDS Human protein_coding chr2:3623246 chr2:3623257 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_18802 0 0 1 0 1 RPS7 chr2:3623274 5'GT 3623274 Upstream 18bp
chr19 55899664 55899664 1 + G A CESC 55899674 + 55899654 55899694 41 CTGTGATGGTGAAGAGGAAGCGGACCCGCCCCACCAAGAGC CTGTGATGGTAAAGAGGAAGCGGACCCGCCCCACCAAGAGC < 41bp 1 0.606906821361098 1 0.44150173664093 experiment 0.786186357277805 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899674 chr19:55899664 synonymous SNV . 0 11 hm5C_associated_SNPs_18803 0 0 1 0 1 RPL28 chr19:55899611 3'AG 55899611 Downstream 54bp
chr10 75529389 75529389 1 + G T CESC 75529387 + 75529367 75529407 41 ATCCAGCATATCGGGGAGTCCTGAATAGCCCTGTGAAGGCT ATCCAGCATATCGGGGAGTCCTTAATAGCCCTGTGAAGGCT < 41bp 1 0.462932397462649 1 0.747394204139709 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529387 chr10:75529389 synonymous SNV . 0 23 hm5C_associated_SNPs_18804 0 0 1 0 1 SEC24C chr10:75529373 3'AG 75529373 Downstream 17bp
chr1 24022845 24022845 1 + C T CESC 24022848 + 24022828 24022868 41 TTTCAGTATGATGGGATCATCCTTCCTGGCAAATAAATTCC TTTCAGTATGATGGGATTATCCTTCCTGGCAAATAAATTCC < 41bp 1 0.0484657483222136 1 0.0435154736042023 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022848 chr1:24022845 synonymous SNV . 0 18 hm5C_associated_SNPs_18805 0 0 1 0 1 RPL11 chr1:24022834 3'AG 24022834 Downstream 12bp
chr1 6681563 6681563 1 + C T CESC 6681570 + 6681550 6681590 41 CCACACCTGGATTCACCTGTCCTGTGCGAAAATCCGGAAAT CCACACCTGGATTTACCTGTCCTGTGCGAAAATCCGGAAAT < 41bp 1 0.184671383509192 1 0.11658051609993 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF13 ENSG00000116273 CDS Human protein_coding chr1:6681570 chr1:6681563 nonsynonymous SNV 1.000 5 14 hm5C_associated_SNPs_18806 0 0 1 0 1 PHF13 chr1:6681471 3'AG 6681471 Downstream 93bp
chrX 48399807 48399807 1 + C T CESC 48399810 + 48399790 48399830 41 GTGTTGCAGCACATCCTCATCCGAGCCTTTGATTTGAGTGG GTGTTGCAGCACATCCTTATCCGAGCCTTTGATTTGAGTGG < 41bp 1 0.496898680590144 1 0.383635818958282 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399810 chrX:48399807 synonymous SNV . 0 18 hm5C_associated_SNPs_18810 0 0 0 0 3 TBC1D25 chrX:48399721 3'AG 48399721 Downstream 87bp
chrX 48399807 48399807 1 + C T CESC 48399810 + 48399790 48399830 41 GTGTTGCAGCACATCCTCATCCGAGCCTTTGATTTGAGTGG GTGTTGCAGCACATCCTTATCCGAGCCTTTGATTTGAGTGG < 41bp 1 0.496898680590144 1 0.383635818958282 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399810 chrX:48399807 synonymous SNV . 0 18 hm5C_associated_SNPs_18810 0 0 0 0 3 TBC1D25 chrX:48399830 5'GT 48399830 Upstream 24bp
chrX 48399807 48399807 1 + C T CESC 48399810 + 48399790 48399830 41 GTGTTGCAGCACATCCTCATCCGAGCCTTTGATTTGAGTGG GTGTTGCAGCACATCCTTATCCGAGCCTTTGATTTGAGTGG < 41bp 1 0.496898680590144 1 0.383635818958282 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399810 chrX:48399807 synonymous SNV . 0 18 hm5C_associated_SNPs_18810 0 0 0 0 3 TBC1D25 chrX:48399901 5'GT 48399901 Upstream 95bp
chr17 57754406 57754406 1 + G C CESC 57754417 + 57754397 57754437 41 ATCTACATAGACAGTAATAACAACCCGGAGAGATTTCTTCG ATCTACATACACAGTAATAACAACCCGGAGAGATTTCTTCG < 41bp 1 0.237732669866332 1 0.129548519849777 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57754417 chr17:57754406 nonsynonymous SNV 0.999 4 10 hm5C_associated_SNPs_18811 0 0 1 0 1 CLTC chr17:57754315 3'AG 57754315 Downstream 92bp
chr17 7810527 7810527 1 + G C CESC 7810511 + 7810491 7810531 41 GAGAAGGAGGAAGCTGAAAACCAGGAGGAAAAGCCAGAGAA GAGAAGGAGGAAGCTGAAAACCAGGAGGAAAAGCCACAGAA < 41bp 1 0.532115492228741 1 0.6708664894104 experiment 0.935769015542519 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810511 chr17:7810527 nonsynonymous SNV 0.996 3 37 hm5C_associated_SNPs_18813 0 0 1 0 2 CHD3 chr17:7810444 3'AG 7810444 Downstream 84bp
chr17 7810527 7810527 1 + G C CESC 7810511 + 7810491 7810531 41 GAGAAGGAGGAAGCTGAAAACCAGGAGGAAAAGCCAGAGAA GAGAAGGAGGAAGCTGAAAACCAGGAGGAAAAGCCACAGAA < 41bp 1 0.532115492228741 1 0.6708664894104 experiment 0.935769015542519 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810511 chr17:7810527 nonsynonymous SNV 0.996 3 37 hm5C_associated_SNPs_18813 0 0 1 0 2 CHD3 chr17:7810565 5'GT 7810565 Upstream 39bp
chr17 7810527 7810527 1 + G C CESC 7810524 + 7810504 7810544 41 CTGAAAACCAGGAGGAAAAGCCAGAGAAGAACAGCAGAATT CTGAAAACCAGGAGGAAAAGCCACAGAAGAACAGCAGAATT < 41bp 1 0.33267358072032 1 0.414039313793182 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810524 chr17:7810527 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_18814 0 0 1 0 2 CHD3 chr17:7810444 3'AG 7810444 Downstream 84bp
chr17 7810527 7810527 1 + G C CESC 7810524 + 7810504 7810544 41 CTGAAAACCAGGAGGAAAAGCCAGAGAAGAACAGCAGAATT CTGAAAACCAGGAGGAAAAGCCACAGAAGAACAGCAGAATT < 41bp 1 0.33267358072032 1 0.414039313793182 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810524 chr17:7810527 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_18814 0 0 1 0 2 CHD3 chr17:7810565 5'GT 7810565 Upstream 39bp
chr17 7810527 7810527 1 + G C CESC 7810525 + 7810505 7810545 41 TGAAAACCAGGAGGAAAAGCCAGAGAAGAACAGCAGAATTG TGAAAACCAGGAGGAAAAGCCACAGAAGAACAGCAGAATTG < 41bp 1 0.371307249744797 1 0.315534114837646 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810525 chr17:7810527 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_18815 0 0 1 0 2 CHD3 chr17:7810444 3'AG 7810444 Downstream 84bp
chr17 7810527 7810527 1 + G C CESC 7810525 + 7810505 7810545 41 TGAAAACCAGGAGGAAAAGCCAGAGAAGAACAGCAGAATTG TGAAAACCAGGAGGAAAAGCCACAGAAGAACAGCAGAATTG < 41bp 1 0.371307249744797 1 0.315534114837646 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810525 chr17:7810527 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_18815 0 0 1 0 2 CHD3 chr17:7810565 5'GT 7810565 Upstream 39bp
chr4 2965765 2965765 1 + C G CESC 2965776 + 2965756 2965796 41 CCTCGGTCTCGCAGAATCCGCCGGCGGCGGCGGCGCCAGGA CCTCGGTCTGGCAGAATCCGCCGGCGGCGGCGGCGCCAGGA < 41bp 1 0.695548291111018 1 0.825613439083099 experiment 0.608903417777964 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRK4 ENSG00000125388 CDS Human protein_coding chr4:2965776 chr4:2965765 nonsynonymous SNV . 0 10 hm5C_associated_SNPs_18816 0 0 1 0 1 GRK4 chr4:2965849 5'GT 2965849 Upstream 85bp
chr11 65733421 65733421 1 + G A CESC 65733404 + 65733384 65733424 41 GGGCCTCACCGTGGAGCATGCCATTGATTCCTTCCGAGAAG GGGCCTCACCGTGGAGCATGCCATTGATTCCTTCCGAAAAG < 41bp 1 0.0775907954700059 1 0.101965039968491 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SART1 ENSG00000175467 CDS Human protein_coding chr11:65733404 chr11:65733421 nonsynonymous SNV 0.999 4 38 hm5C_associated_SNPs_18817 0 0 1 0 2 SART1 chr11:65733358 3'AG 65733358 Downstream 64bp
chr11 65733421 65733421 1 + G A CESC 65733404 + 65733384 65733424 41 GGGCCTCACCGTGGAGCATGCCATTGATTCCTTCCGAGAAG GGGCCTCACCGTGGAGCATGCCATTGATTCCTTCCGAAAAG < 41bp 1 0.0775907954700059 1 0.101965039968491 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SART1 ENSG00000175467 CDS Human protein_coding chr11:65733404 chr11:65733421 nonsynonymous SNV 0.999 4 38 hm5C_associated_SNPs_18817 0 0 1 0 2 SART1 chr11:65733457 5'GT 65733457 Upstream 37bp
chr15 91419569 91419569 1 + C T CESC 91419579 + 91419559 91419599 41 CAGCCGGCTGCAGAGGGAGCCTCAAGTGAGTGTGGCCCCAG CAGCCGGCTGTAGAGGGAGCCTCAAGTGAGTGTGGCCCCAG < 41bp 1 0.758279864206907 1 0.637227535247803 experiment 0.483440271586185 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FURIN ENSG00000140564 CDS Human protein_coding chr15:91419579 chr15:91419569 stopgain 0.999 0 11 hm5C_associated_SNPs_18822 0 0 1 0 2 FURIN chr15:91419485 3'AG 91419485 Downstream 85bp
chr15 91419569 91419569 1 + C T CESC 91419579 + 91419559 91419599 41 CAGCCGGCTGCAGAGGGAGCCTCAAGTGAGTGTGGCCCCAG CAGCCGGCTGTAGAGGGAGCCTCAAGTGAGTGTGGCCCCAG < 41bp 1 0.758279864206907 1 0.637227535247803 experiment 0.483440271586185 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FURIN ENSG00000140564 CDS Human protein_coding chr15:91419579 chr15:91419569 stopgain 0.999 0 11 hm5C_associated_SNPs_18822 0 0 1 0 2 FURIN chr15:91419583 5'GT 91419583 Upstream 15bp
chr6 142519611 142519611 1 + C T CESC 142519603 + 142519583 142519623 41 AGAAAATGAAGATGCTGGAGCAGCCTCTCTGCCCACTCAGC AGAAAATGAAGATGCTGGAGCAGCCTCTTTGCCCACTCAGC < 41bp 1 0.307723065082631 1 0.215969890356064 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VTA1 ENSG00000009844 CDS Human protein_coding chr6:142519603 chr6:142519611 synonymous SNV . 0 29 hm5C_associated_SNPs_18823 0 0 1 1 1 VTA1 chr6:142519576 3'AG 142519576 Downstream 36bp
chr2 74425838 74425838 1 + C G CESC 74425852 + 74425832 74425872 41 TCCCTTCGCCTTCGCCCTTTCCACCTCGCGGCAGTTCGGTA TCCCTTGGCCTTCGCCCTTTCCACCTCGCGGCAGTTCGGTA < 41bp 1 0.267900429788931 1 0.153401911258698 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTHFD2 ENSG00000065911 CDS Human protein_coding chr2:74425852 chr2:74425838 nonsynonymous SNV 0.002 0 7 hm5C_associated_SNPs_18824 0 0 1 0 1 MTHFD2 chr2:74425869 5'GT 74425869 Upstream 32bp
chr9 136216849 136216849 1 + G A CESC 136216839 + 136216819 136216859 41 GAAGAAGCAGAGACTGTTGGCCCGGGCCGAGAAGAAGGCTG GAAGAAGCAGAGACTGTTGGCCCGGGCCGAAAAGAAGGCTG < 41bp 1 0.724099054447563 1 0.48987352848053 experiment 0.551801891104874 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216839 chr9:136216849 synonymous SNV . 0 31 hm5C_associated_SNPs_18828 0 0 1 0 2 RPL7A chr9:136216767 3'AG 136216767 Downstream 83bp
chr9 136216849 136216849 1 + G A CESC 136216839 + 136216819 136216859 41 GAAGAAGCAGAGACTGTTGGCCCGGGCCGAGAAGAAGGCTG GAAGAAGCAGAGACTGTTGGCCCGGGCCGAAAAGAAGGCTG < 41bp 1 0.724099054447563 1 0.48987352848053 experiment 0.551801891104874 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216839 chr9:136216849 synonymous SNV . 0 31 hm5C_associated_SNPs_18828 0 0 1 0 2 RPL7A chr9:136216907 5'GT 136216907 Upstream 59bp
chr9 136216849 136216849 1 + G A CESC 136216840 + 136216820 136216860 41 AAGAAGCAGAGACTGTTGGCCCGGGCCGAGAAGAAGGCTGC AAGAAGCAGAGACTGTTGGCCCGGGCCGAAAAGAAGGCTGC < 41bp 1 0.511423743820907 1 0.658650040626526 experiment 0.977152512358186 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216840 chr9:136216849 synonymous SNV . 0 30 hm5C_associated_SNPs_18829 0 0 1 0 2 RPL7A chr9:136216767 3'AG 136216767 Downstream 83bp
chr9 136216849 136216849 1 + G A CESC 136216840 + 136216820 136216860 41 AAGAAGCAGAGACTGTTGGCCCGGGCCGAGAAGAAGGCTGC AAGAAGCAGAGACTGTTGGCCCGGGCCGAAAAGAAGGCTGC < 41bp 1 0.511423743820907 1 0.658650040626526 experiment 0.977152512358186 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216840 chr9:136216849 synonymous SNV . 0 30 hm5C_associated_SNPs_18829 0 0 1 0 2 RPL7A chr9:136216907 5'GT 136216907 Upstream 59bp
chr9 136216849 136216849 1 + G A CESC 136216845 + 136216825 136216865 41 GCAGAGACTGTTGGCCCGGGCCGAGAAGAAGGCTGCTGGCA GCAGAGACTGTTGGCCCGGGCCGAAAAGAAGGCTGCTGGCA < 41bp 1 0.543465306837874 1 0.346510112285614 experiment 0.913069386324251 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216845 chr9:136216849 synonymous SNV . 0 25 hm5C_associated_SNPs_18830 0 0 1 0 2 RPL7A chr9:136216767 3'AG 136216767 Downstream 83bp
chr9 136216849 136216849 1 + G A CESC 136216845 + 136216825 136216865 41 GCAGAGACTGTTGGCCCGGGCCGAGAAGAAGGCTGCTGGCA GCAGAGACTGTTGGCCCGGGCCGAAAAGAAGGCTGCTGGCA < 41bp 1 0.543465306837874 1 0.346510112285614 experiment 0.913069386324251 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216845 chr9:136216849 synonymous SNV . 0 25 hm5C_associated_SNPs_18830 0 0 1 0 2 RPL7A chr9:136216907 5'GT 136216907 Upstream 59bp
chr9 136216849 136216849 1 + G A CESC 136216857 + 136216837 136216877 41 GGCCCGGGCCGAGAAGAAGGCTGCTGGCAAAGGGGACGTCC GGCCCGGGCCGAAAAGAAGGCTGCTGGCAAAGGGGACGTCC < 41bp 1 0.696106341002876 1 0.132033318281174 experiment 0.607787317994247 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216857 chr9:136216849 synonymous SNV . 0 13 hm5C_associated_SNPs_18831 0 0 1 0 2 RPL7A chr9:136216767 3'AG 136216767 Downstream 83bp
chr9 136216849 136216849 1 + G A CESC 136216857 + 136216837 136216877 41 GGCCCGGGCCGAGAAGAAGGCTGCTGGCAAAGGGGACGTCC GGCCCGGGCCGAAAAGAAGGCTGCTGGCAAAGGGGACGTCC < 41bp 1 0.696106341002876 1 0.132033318281174 experiment 0.607787317994247 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216857 chr9:136216849 synonymous SNV . 0 13 hm5C_associated_SNPs_18831 0 0 1 0 2 RPL7A chr9:136216907 5'GT 136216907 Upstream 59bp
chr9 136216849 136216849 1 + G A CESC 136216860 + 136216840 136216880 41 CCGGGCCGAGAAGAAGGCTGCTGGCAAAGGGGACGTCCCAA CCGGGCCGAAAAGAAGGCTGCTGGCAAAGGGGACGTCCCAA < 41bp 1 0.5720770802378 1 0.213141143321991 experiment 0.855845839524399 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216860 chr9:136216849 synonymous SNV . 0 10 hm5C_associated_SNPs_18832 0 0 1 0 2 RPL7A chr9:136216767 3'AG 136216767 Downstream 83bp
chr9 136216849 136216849 1 + G A CESC 136216860 + 136216840 136216880 41 CCGGGCCGAGAAGAAGGCTGCTGGCAAAGGGGACGTCCCAA CCGGGCCGAAAAGAAGGCTGCTGGCAAAGGGGACGTCCCAA < 41bp 1 0.5720770802378 1 0.213141143321991 experiment 0.855845839524399 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216860 chr9:136216849 synonymous SNV . 0 10 hm5C_associated_SNPs_18832 0 0 1 0 2 RPL7A chr9:136216907 5'GT 136216907 Upstream 59bp
chr10 102685753 102685753 1 + G A CESC 102685745 + 102685725 102685765 41 CTTACACAAATACCTTAGAACGTCTAGTGAAGGAAATGGAA CTTACACAAATACCTTAGAACGTCTAGTAAAGGAAATGGAA < 41bp 1 0.0650650146700385 1 0.0724941492080688 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLF2 ENSG00000119906 CDS Human protein_coding chr10:102685745 chr10:102685753 synonymous SNV . 0 29 hm5C_associated_SNPs_18833 0 0 1 0 2 SLF2 chr10:102685706 3'AG 102685706 Downstream 48bp
chr10 102685753 102685753 1 + G A CESC 102685745 + 102685725 102685765 41 CTTACACAAATACCTTAGAACGTCTAGTGAAGGAAATGGAA CTTACACAAATACCTTAGAACGTCTAGTAAAGGAAATGGAA < 41bp 1 0.0650650146700385 1 0.0724941492080688 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLF2 ENSG00000119906 CDS Human protein_coding chr10:102685745 chr10:102685753 synonymous SNV . 0 29 hm5C_associated_SNPs_18833 0 0 1 0 2 SLF2 chr10:102685776 5'GT 102685776 Upstream 24bp
chr11 67049187 67049187 1 + G C CESC 67049189 + 67049169 67049209 41 AAGCTCAGCTTCATCCTGGACCTCATGAACGGTGAGTGCTG AAGCTCAGCTTCATCCTGCACCTCATGAACGGTGAGTGCTG < 41bp 1 0.169812089260696 1 0.0145429372787476 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67049189 chr11:67049187 nonsynonymous SNV 0.986 4 19 hm5C_associated_SNPs_18834 0 0 1 0 2 GRK2 chr11:67049121 3'AG 67049121 Downstream 67bp
chr11 67049187 67049187 1 + G C CESC 67049189 + 67049169 67049209 41 AAGCTCAGCTTCATCCTGGACCTCATGAACGGTGAGTGCTG AAGCTCAGCTTCATCCTGCACCTCATGAACGGTGAGTGCTG < 41bp 1 0.169812089260696 1 0.0145429372787476 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67049189 chr11:67049187 nonsynonymous SNV 0.986 4 19 hm5C_associated_SNPs_18834 0 0 1 0 2 GRK2 chr11:67049199 5'GT 67049199 Upstream 13bp
chr5 112868672 112868672 1 + G A CESC 112868670 + 112868650 112868690 41 ATTGGCAGCTATCGCTGTGGCTGAAAGAGTTGCCGCAGAGA ATTGGCAGCTATCGCTGTGGCTAAAAGAGTTGCCGCAGAGA < 41bp 1 0.714197932878226 1 0.571842670440674 experiment 0.571604134243548 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868670 chr5:112868672 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_18835 0 0 1 0 2 YTHDC2 chr5:112868576 3'AG 112868576 Downstream 97bp
chr5 112868672 112868672 1 + G A CESC 112868670 + 112868650 112868690 41 ATTGGCAGCTATCGCTGTGGCTGAAAGAGTTGCCGCAGAGA ATTGGCAGCTATCGCTGTGGCTAAAAGAGTTGCCGCAGAGA < 41bp 1 0.714197932878226 1 0.571842670440674 experiment 0.571604134243548 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868670 chr5:112868672 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_18835 0 0 1 0 2 YTHDC2 chr5:112868742 5'GT 112868742 Upstream 71bp
chr5 112868672 112868672 1 + G A CESC 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA CGCTGTGGCTAAAAGAGTTGCCGCAGAGAGACGGGAAAGGA < 41bp 1 0.505045783865088 1 0.0926721394062042 experiment 0.989908432269824 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868672 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_18836 0 0 1 0 2 YTHDC2 chr5:112868576 3'AG 112868576 Downstream 97bp
chr5 112868672 112868672 1 + G A CESC 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA CGCTGTGGCTAAAAGAGTTGCCGCAGAGAGACGGGAAAGGA < 41bp 1 0.505045783865088 1 0.0926721394062042 experiment 0.989908432269824 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868672 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_18836 0 0 1 0 2 YTHDC2 chr5:112868742 5'GT 112868742 Upstream 71bp
chr5 112868672 112868672 1 + G A CESC 112868683 + 112868663 112868703 41 GCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT GCTGTGGCTAAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT < 41bp 1 0.572305840408575 1 0.634931802749634 experiment 0.85538831918285 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868683 chr5:112868672 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_18837 0 0 1 0 2 YTHDC2 chr5:112868576 3'AG 112868576 Downstream 97bp
chr5 112868672 112868672 1 + G A CESC 112868683 + 112868663 112868703 41 GCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT GCTGTGGCTAAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT < 41bp 1 0.572305840408575 1 0.634931802749634 experiment 0.85538831918285 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868683 chr5:112868672 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_18837 0 0 1 0 2 YTHDC2 chr5:112868742 5'GT 112868742 Upstream 71bp
chr22 29695785 29695785 1 + G C CESC 29695781 + 29695761 29695801 41 CCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG CCCTGGGGGGCCCCCTGGACCTTTCATGGAACAGATGGGAG < 41bp 1 0.197344992923853 1 0.201024532318115 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695781 chr22:29695785 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_18842 0 0 1 0 1 EWSR1 chr22:29695841 5'GT 29695841 Upstream 57bp
chrX 129173217 129173217 1 + G A CESC 129173210 + 129173190 129173230 41 GGCTACCTACTCGGGTCAGACAGCCATGAAGCTGGCCAGCA GGCTACCTACTCGGGTCAGACAGCCATAAAGCTGGCCAGCA < 41bp 1 0.360601047595861 1 0.722644507884979 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129173210 chrX:129173217 nonsynonymous SNV 0.995 1 28 hm5C_associated_SNPs_18843 0 0 0 0 1 BCORL1 chrX:129173257 5'GT 129173257 Upstream 41bp
chr1 44878382 44878382 1 + C G CESC 44878373 + 44878353 44878393 41 ATCGGGAAGCCTCATCTAGCCCAGAGGATCGGAATGACAGA ATCGGGAAGCCTCATCTAGCCCAGAGGATGGGAATGACAGA < 41bp 1 0.454295949726071 1 0.295323401689529 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878373 chr1:44878382 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_18844 0 0 1 0 1 RNF220 chr1:44878394 5'GT 44878394 Upstream 13bp
chr17 38318312 38318312 1 + G A CESC 38318298 + 38318278 38318318 41 CAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATG CAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGATAATGATG < 41bp 1 0.185158863569658 1 0.0587791800498962 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318298 chr17:38318312 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_18845 0 0 1 0 2 CASC3 chr17:38318255 3'AG 38318255 Downstream 58bp
chr17 38318312 38318312 1 + G A CESC 38318298 + 38318278 38318318 41 CAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATG CAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGATAATGATG < 41bp 1 0.185158863569658 1 0.0587791800498962 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318298 chr17:38318312 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_18845 0 0 1 0 2 CASC3 chr17:38318406 5'GT 38318406 Upstream 95bp
chr17 38318312 38318312 1 + G A CESC 38318303 + 38318283 38318323 41 TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGAT TGGGTAAAAAGGGCCCTAAGCATTTGGATAATGATGAAGAT < 41bp 1 0.138879640809041 1 0.11624750494957 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318303 chr17:38318312 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_18846 0 0 1 0 2 CASC3 chr17:38318255 3'AG 38318255 Downstream 58bp
chr17 38318312 38318312 1 + G A CESC 38318303 + 38318283 38318323 41 TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGAT TGGGTAAAAAGGGCCCTAAGCATTTGGATAATGATGAAGAT < 41bp 1 0.138879640809041 1 0.11624750494957 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318303 chr17:38318312 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_18846 0 0 1 0 2 CASC3 chr17:38318406 5'GT 38318406 Upstream 95bp
chr17 33324841 33324841 1 + C T CESC 33324843 + 33324823 33324863 41 CTCAGAAATGAAGCGAGTCACAGTAAGTGAAGACCCTATGC CTCAGAAATGAAGCGAGTTACAGTAAGTGAAGACCCTATGC < 41bp 1 0.651576345263835 1 0.350120425224304 experiment 0.696847309472329 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33324843 chr17:33324841 synonymous SNV . 0 19 hm5C_associated_SNPs_18848 0 0 1 0 2 LIG3 chr17:33324757 3'AG 33324757 Downstream 85bp
chr17 33324841 33324841 1 + C T CESC 33324843 + 33324823 33324863 41 CTCAGAAATGAAGCGAGTCACAGTAAGTGAAGACCCTATGC CTCAGAAATGAAGCGAGTTACAGTAAGTGAAGACCCTATGC < 41bp 1 0.651576345263835 1 0.350120425224304 experiment 0.696847309472329 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33324843 chr17:33324841 synonymous SNV . 0 19 hm5C_associated_SNPs_18848 0 0 1 0 2 LIG3 chr17:33324844 5'GT 33324844 Upstream 4bp
chr6 147830478 147830478 1 + C A CESC 147830460 + 147830440 147830480 41 CCCAAACTGAAGCTGAAGATCATGATCAGGGATAAGCTCGT CCCAAACTGAAGCTGAAGATCATGATCAGGGATAAGCTAGT < 41bp 1 0.67212436002547 1 0.322581648826599 experiment 0.655751279949061 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SAMD5 ENSG00000203727 CDS Human protein_coding chr6:147830460 chr6:147830478 synonymous SNV . 0 39 hm5C_associated_SNPs_18849 0 0 0 0 1 SAMD5 chr6:147830523 5'GT 147830523 Upstream 46bp
chr16 56966267 56966267 1 + C G CESC 56966261 + 56966241 56966281 41 GACCGCGGCTGGAGTGTGGGCCACCTCAAGGCCCACCTGAG GACCGCGGCTGGAGTGTGGGCCACCTGAAGGCCCACCTGAG < 41bp 1 0.352140453252222 1 0.134180307388306 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56966261 chr16:56966267 synonymous SNV . 0 27 hm5C_associated_SNPs_18850 0 0 1 0 1 HERPUD1 chr16:56966303 5'GT 56966303 Upstream 37bp
chr16 56966267 56966267 1 + C G CESC 56966262 + 56966242 56966282 41 ACCGCGGCTGGAGTGTGGGCCACCTCAAGGCCCACCTGAGC ACCGCGGCTGGAGTGTGGGCCACCTGAAGGCCCACCTGAGC < 41bp 1 0.701622974090841 1 0.229670882225037 experiment 0.596754051818319 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56966262 chr16:56966267 synonymous SNV . 0 26 hm5C_associated_SNPs_18851 0 0 1 0 1 HERPUD1 chr16:56966303 5'GT 56966303 Upstream 37bp
chr16 56966267 56966267 1 + C G CESC 56966272 + 56966252 56966292 41 GAGTGTGGGCCACCTCAAGGCCCACCTGAGCCGCGTCTACC GAGTGTGGGCCACCTGAAGGCCCACCTGAGCCGCGTCTACC < 41bp 1 0.284832205151123 1 0.101716995239258 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56966272 chr16:56966267 synonymous SNV . 0 16 hm5C_associated_SNPs_18852 0 0 1 0 1 HERPUD1 chr16:56966303 5'GT 56966303 Upstream 37bp
chr16 56966267 56966267 1 + C G CESC 56966273 + 56966253 56966293 41 AGTGTGGGCCACCTCAAGGCCCACCTGAGCCGCGTCTACCC AGTGTGGGCCACCTGAAGGCCCACCTGAGCCGCGTCTACCC < 41bp 1 0.388065748203246 1 0.111738502979279 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56966273 chr16:56966267 synonymous SNV . 0 15 hm5C_associated_SNPs_18853 0 0 1 0 1 HERPUD1 chr16:56966303 5'GT 56966303 Upstream 37bp
chr16 56966267 56966267 1 + C G CESC 56966274 + 56966254 56966294 41 GTGTGGGCCACCTCAAGGCCCACCTGAGCCGCGTCTACCCC GTGTGGGCCACCTGAAGGCCCACCTGAGCCGCGTCTACCCC < 41bp 1 0.721534410030123 1 0.072087287902832 experiment 0.556931179939753 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56966274 chr16:56966267 synonymous SNV . 0 14 hm5C_associated_SNPs_18854 0 0 1 0 1 HERPUD1 chr16:56966303 5'GT 56966303 Upstream 37bp
chr3 169496595 169496595 1 + C G CESC 169496589 + 169496569 169496609 41 GAAATTCATCAGGCTGCTGACTATCTCAAAGTGGAAGAGGT GAAATTCATCAGGCTGCTGACTATCTGAAAGTGGAAGAGGT < 41bp 1 0.135919596886543 1 0.076798141002655 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MYNN ENSG00000085274 CDS Human protein_coding chr3:169496589 chr3:169496595 synonymous SNV . 0 27 hm5C_associated_SNPs_18855 0 0 1 0 1 MYNN chr3:169496556 3'AG 169496556 Downstream 40bp
chr1 39910438 39910438 1 + G C CESC 39910457 + 39910437 39910477 41 AGACAGAACAGAGTGTAGCACTTTTGGAGCAGAAGTGGCAT ACACAGAACAGAGTGTAGCACTTTTGGAGCAGAAGTGGCAT < 41bp 1 0.0622699904160357 1 0.0521182715892792 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39910457 chr1:39910438 nonsynonymous SNV 0.991 2 2 hm5C_associated_SNPs_18856 0 0 1 0 1 MACF1 chr1:39910507 5'GT 39910507 Upstream 70bp
chr1 180849254 180849254 1 + G C CESC 180849252 + 180849232 180849272 41 TCCGCCTGGAGAATGAACATCTGAATAACTGTGGTGAATTC TCCGCCTGGAGAATGAACATCTCAATAACTGTGGTGAATTC < 41bp 1 0.643724358285177 1 0.82267838716507 experiment 0.712551283429646 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control XPR1 ENSG00000143324 CDS Human protein_coding chr1:180849252 chr1:180849254 synonymous SNV . 0 23 hm5C_associated_SNPs_18857 0 0 1 0 1 XPR1 chr1:180849212 3'AG 180849212 Downstream 43bp
chr20 1902301 1902301 1 + G A CESC 1902319 + 1902299 1902339 41 ACGTCACCTTGCAGGGGGACCCTCTTCGTGGGACTGCCAAC ACATCACCTTGCAGGGGGACCCTCTTCGTGGGACTGCCAAC < 41bp 1 0.0689265162473602 1 0.0200207531452179 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1902319 chr20:1902301 nonsynonymous SNV 0.805 0 3 hm5C_associated_SNPs_18858 0 0 0 0 1 SIRPA chr20:1902358 5'GT 1902358 Upstream 58bp
chr11 2797249 2797249 1 + C T CESC 2797253 + 2797233 2797273 41 ACTCGCAGGGCCACCTCAACCTCATGGTGCGCATCAAGGAG ACTCGCAGGGCCACCTTAACCTCATGGTGCGCATCAAGGAG < 41bp 1 0.557243766176094 1 0.432219177484512 experiment 0.885512467647813 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2797253 chr11:2797249 synonymous SNV . 0 17 hm5C_associated_SNPs_18859 0 0 0 0 2 KCNQ1 chr11:2797190 3'AG 2797190 Downstream 60bp
chr11 2797249 2797249 1 + C T CESC 2797253 + 2797233 2797273 41 ACTCGCAGGGCCACCTCAACCTCATGGTGCGCATCAAGGAG ACTCGCAGGGCCACCTTAACCTCATGGTGCGCATCAAGGAG < 41bp 1 0.557243766176094 1 0.432219177484512 experiment 0.885512467647813 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2797253 chr11:2797249 synonymous SNV . 0 17 hm5C_associated_SNPs_18859 0 0 0 0 2 KCNQ1 chr11:2797284 5'GT 2797284 Upstream 36bp
chr11 6631719 6631719 1 + C T CESC 6631708 + 6631688 6631728 41 CGCAGGTGGCATTGGAAGGCCTTCGGCCTACCATCCCACCA CGCAGGTGGCATTGGAAGGCCTTCGGCCTACTATCCCACCA < 41bp 1 0.341365170307705 1 0.394572556018829 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6631708 chr11:6631719 synonymous SNV . 0 32 hm5C_associated_SNPs_18860 0 0 1 0 1 ILK chr11:6631693 3'AG 6631693 Downstream 27bp
chr17 30692357 30692357 1 + C T CESC 30692372 + 30692352 30692392 41 TGCCCCCACCTGTTCCACGTCCTGGAATTCCTCCAATGACT TGCCCTCACCTGTTCCACGTCCTGGAATTCCTCCAATGACT < 41bp 1 0.252474807711144 1 0.236514180898666 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30692372 chr17:30692357 nonsynonymous SNV 0.930 3 6 hm5C_associated_SNPs_18861 0 0 1 0 1 ZNF207 chr17:30692349 3'AG 30692349 Downstream 9bp
chr6 168363158 168363158 1 + C T CESC 168363160 + 168363140 168363180 41 CAGCAGTTAGAAGAGATGCGCAAGCGGGAAGCGGAAGACCG CAGCAGTTAGAAGAGATGTGCAAGCGGGAAGCGGAAGACCG < 41bp 1 0.292409086334136 1 0.486234545707703 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363160 chr6:168363158 nonsynonymous SNV 0.849 3 19 hm5C_associated_SNPs_18864 0 0 1 0 3 AFDN chr6:168363113 3'AG 168363113 Downstream 46bp
chr6 168363158 168363158 1 + C T CESC 168363160 + 168363140 168363180 41 CAGCAGTTAGAAGAGATGCGCAAGCGGGAAGCGGAAGACCG CAGCAGTTAGAAGAGATGTGCAAGCGGGAAGCGGAAGACCG < 41bp 1 0.292409086334136 1 0.486234545707703 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363160 chr6:168363158 nonsynonymous SNV 0.849 3 19 hm5C_associated_SNPs_18864 0 0 1 0 3 AFDN chr6:168363119 3'AG 168363119 Downstream 40bp
chr6 168363158 168363158 1 + C T CESC 168363160 + 168363140 168363180 41 CAGCAGTTAGAAGAGATGCGCAAGCGGGAAGCGGAAGACCG CAGCAGTTAGAAGAGATGTGCAAGCGGGAAGCGGAAGACCG < 41bp 1 0.292409086334136 1 0.486234545707703 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363160 chr6:168363158 nonsynonymous SNV 0.849 3 19 hm5C_associated_SNPs_18864 0 0 1 0 3 AFDN chr6:168363247 5'GT 168363247 Upstream 90bp
chr2 157406260 157406260 1 + G A CESC 157406248 + 157406228 157406268 41 ACCCCCAGACAGGGAAAGTGCGTGTGAGCGGCGCACGGTGC ACCCCCAGACAGGGAAAGTGCGTGTGAGCGGCACACGGTGC < 41bp 1 0.597437665575455 1 0.34377732872963 experiment 0.805124668849091 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157406248 chr2:157406260 nonsynonymous SNV 0.157 2 33 hm5C_associated_SNPs_18865 0 0 0 0 1 GPD2 chr2:157406284 5'GT 157406284 Upstream 25bp
chr19 14024282 14024282 1 + G A CESC 14024290 + 14024270 14024310 41 GGACATCCCGCCGCCAGTGGCCATAGGAAAAGGCCCGGCGT GGACATCCCGCCACCAGTGGCCATAGGAAAAGGCCCGGCGT < 41bp 1 0.198756301706461 1 0.190018594264984 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14024290 chr19:14024282 synonymous SNV . 0 13 hm5C_associated_SNPs_18866 0 0 0 0 1 CC2D1A chr19:14024217 3'AG 14024217 Downstream 66bp
chr19 18053578 18053578 1 + G A CESC 18053574 + 18053554 18053594 41 CGGCAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCC CGGCAAGGCGCCGCGGGTGGCCACATCCAGCAAGGTCACCC < 41bp 1 0.508509038670453 1 0.0952799618244171 experiment 0.982981922659094 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18053574 chr19:18053578 synonymous SNV . 0 25 hm5C_associated_SNPs_18868 0 0 1 0 1 CCDC124 chr19:18053654 5'GT 18053654 Upstream 77bp
chr19 18053578 18053578 1 + G A CESC 18053575 + 18053555 18053595 41 GGCAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCCG GGCAAGGCGCCGCGGGTGGCCACATCCAGCAAGGTCACCCG < 41bp 1 0.516478245425661 1 0.754170060157776 experiment 0.967043509148678 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18053575 chr19:18053578 synonymous SNV . 0 24 hm5C_associated_SNPs_18869 0 0 1 0 1 CCDC124 chr19:18053654 5'GT 18053654 Upstream 77bp
chr9 96411458 96411458 1 + T C CESC 96411460 + 96411440 96411480 41 GCACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCGAG GCACCAACCGCAAGCGGGCCCTCAACGTCACCAACCTCGAG < 41bp 1 0.509255986770788 1 0.202339798212051 experiment 0.981488026458424 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96411460 chr9:96411458 nonsynonymous SNV 0.995 4 19 hm5C_associated_SNPs_18870 0 0 1 0 1 PHF2 chr9:96411494 5'GT 96411494 Upstream 37bp
chrX 149924193 149924193 1 + G A CESC 149924206 + 149924186 149924226 41 TATGGTCGTATATCAATAGCCAGCTAGACGAGTTTTCTAAT TATGGTCATATATCAATAGCCAGCTAGACGAGTTTTCTAAT < 41bp 1 0.276166694005545 1 0.744213581085205 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149924206 chrX:149924193 synonymous SNV . 0 8 hm5C_associated_SNPs_18873 0 0 0 0 1 MTMR1 chrX:149924161 3'AG 149924161 Downstream 33bp
chr21 47986589 47986589 1 + G A CESC 47986588 + 47986568 47986608 41 ATCCGAGCACACAGGAGCATCGCTGAGTGGTAAGAGCCCAG ATCCGAGCACACAGGAGCATCACTGAGTGGTAAGAGCCCAG < 41bp 1 0.318059058968809 1 0.159271121025085 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47986588 chr21:47986589 nonsynonymous SNV 0.972 2 22 hm5C_associated_SNPs_18874 0 0 1 0 1 DIP2A chr21:47986596 5'GT 47986596 Upstream 8bp
chr2 27157528 27157528 1 + G A CESC 27157542 + 27157522 27157562 41 CCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG CCACGCAGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG < 41bp 1 0.413327696261008 1 0.900439262390137 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157542 chr2:27157528 synonymous SNV . 0 7 hm5C_associated_SNPs_18875 0 0 0 0 2 DPYSL5 chr2:27157446 3'AG 27157446 Downstream 83bp
chr2 27157528 27157528 1 + G A CESC 27157542 + 27157522 27157562 41 CCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG CCACGCAGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG < 41bp 1 0.413327696261008 1 0.900439262390137 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157542 chr2:27157528 synonymous SNV . 0 7 hm5C_associated_SNPs_18875 0 0 0 0 2 DPYSL5 chr2:27157602 5'GT 27157602 Upstream 75bp
chr7 142458521 142458521 1 + C T CESC 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTT < 41bp 1 0.177382172291335 1 0.309405028820038 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458521 synonymous SNV . 0 41 hm5C_associated_SNPs_18876 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 42bp
chr7 142458521 142458521 1 + C T CESC 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTT < 41bp 1 0.177382172291335 1 0.309405028820038 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458521 synonymous SNV . 0 41 hm5C_associated_SNPs_18876 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 45bp
chr7 142458521 142458521 1 + C T CESC 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTTAT < 41bp 1 0.304439321637162 1 0.643358111381531 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458521 synonymous SNV . 0 39 hm5C_associated_SNPs_18877 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 42bp
chr7 142458521 142458521 1 + C T CESC 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTTAT < 41bp 1 0.304439321637162 1 0.643358111381531 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458521 synonymous SNV . 0 39 hm5C_associated_SNPs_18877 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 45bp
chr7 142458521 142458521 1 + C T CESC 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTTATCAA < 41bp 1 0.562984165528395 1 0.218485534191132 experiment 0.87403166894321 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458521 synonymous SNV . 0 36 hm5C_associated_SNPs_18878 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 42bp
chr7 142458521 142458521 1 + C T CESC 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTTATCAA < 41bp 1 0.562984165528395 1 0.218485534191132 experiment 0.87403166894321 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458521 synonymous SNV . 0 36 hm5C_associated_SNPs_18878 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 45bp
chr7 142458521 142458521 1 + C T CESC 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGTGGTGGCTCCCTTATCAACGAACAGTG < 41bp 1 0.326792859588249 1 0.101595669984818 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458521 synonymous SNV . 0 27 hm5C_associated_SNPs_18879 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 42bp
chr7 142458521 142458521 1 + C T CESC 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGTGGTGGCTCCCTTATCAACGAACAGTG < 41bp 1 0.326792859588249 1 0.101595669984818 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458521 synonymous SNV . 0 27 hm5C_associated_SNPs_18879 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 45bp
chr7 142458521 142458521 1 + C T CESC 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGGTGGCTCCCTTATCAACGAACAGTGGG < 41bp 1 0.11871726235794 1 0.0319055020809174 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458521 synonymous SNV . 0 25 hm5C_associated_SNPs_18880 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 42bp
chr7 142458521 142458521 1 + C T CESC 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGGTGGCTCCCTTATCAACGAACAGTGGG < 41bp 1 0.11871726235794 1 0.0319055020809174 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458521 synonymous SNV . 0 25 hm5C_associated_SNPs_18880 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 45bp
chr7 142458521 142458521 1 + C T CESC 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGGTGGCTCCCTTATCAACGAACAGTGGGT < 41bp 1 0.0644598036652054 1 0.0468072295188904 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458521 synonymous SNV . 0 24 hm5C_associated_SNPs_18881 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 42bp
chr7 142458521 142458521 1 + C T CESC 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGGTGGCTCCCTTATCAACGAACAGTGGGT < 41bp 1 0.0644598036652054 1 0.0468072295188904 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458521 synonymous SNV . 0 24 hm5C_associated_SNPs_18881 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 45bp
chr7 142458521 142458521 1 + C T CESC 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGGTGGCTCCCTTATCAACGAACAGTGGGTG < 41bp 1 0.159350333375128 1 0.14717173576355 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458521 synonymous SNV . 0 23 hm5C_associated_SNPs_18882 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 42bp
chr7 142458521 142458521 1 + C T CESC 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGGTGGCTCCCTTATCAACGAACAGTGGGTG < 41bp 1 0.159350333375128 1 0.14717173576355 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458521 synonymous SNV . 0 23 hm5C_associated_SNPs_18882 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 45bp
chr7 142458521 142458521 1 + C T CESC 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGGTGGCTCCCTTATCAACGAACAGTGGGTGGTATC < 41bp 1 0.777851096796634 1 0.888504028320312 experiment 0.444297806406732 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458521 synonymous SNV . 0 18 hm5C_associated_SNPs_18883 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 42bp
chr7 142458521 142458521 1 + C T CESC 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGGTGGCTCCCTTATCAACGAACAGTGGGTGGTATC < 41bp 1 0.777851096796634 1 0.888504028320312 experiment 0.444297806406732 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458521 synonymous SNV . 0 18 hm5C_associated_SNPs_18883 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 45bp
chr7 142458521 142458521 1 + C T CESC 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGCTCCCTTATCAACGAACAGTGGGTGGTATCAGC < 41bp 1 0.399317784540916 1 0.514352381229401 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458521 synonymous SNV . 0 15 hm5C_associated_SNPs_18884 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 42bp
chr7 142458521 142458521 1 + C T CESC 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGCTCCCTTATCAACGAACAGTGGGTGGTATCAGC < 41bp 1 0.399317784540916 1 0.514352381229401 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458521 synonymous SNV . 0 15 hm5C_associated_SNPs_18884 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 45bp
chr7 142458521 142458521 1 + C T CESC 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGCTCCCTTATCAACGAACAGTGGGTGGTATCAGCAGGC < 41bp 1 0.482423237873151 1 0.263899892568588 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458521 synonymous SNV . 0 11 hm5C_associated_SNPs_18885 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 42bp
chr7 142458521 142458521 1 + C T CESC 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGCTCCCTTATCAACGAACAGTGGGTGGTATCAGCAGGC < 41bp 1 0.482423237873151 1 0.263899892568588 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458521 synonymous SNV . 0 11 hm5C_associated_SNPs_18885 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 45bp
chr7 150737370 150737370 1 + C G CESC 150737364 + 150737344 150737384 41 TTTTCTGACAGGTCCATGGCCAACCTCTCTGTCCTGTTTGG TTTTCTGACAGGTCCATGGCCAACCTGTCTGTCCTGTTTGG < 41bp 1 0.190017851119941 1 0.0182360410690308 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150737364 chr7:150737370 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_18889 0 0 1 0 2 ABCB8 chr7:150737355 3'AG 150737355 Downstream 16bp
chr7 150737370 150737370 1 + C G CESC 150737364 + 150737344 150737384 41 TTTTCTGACAGGTCCATGGCCAACCTCTCTGTCCTGTTTGG TTTTCTGACAGGTCCATGGCCAACCTGTCTGTCCTGTTTGG < 41bp 1 0.190017851119941 1 0.0182360410690308 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150737364 chr7:150737370 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_18889 0 0 1 0 2 ABCB8 chr7:150737388 5'GT 150737388 Upstream 19bp
chr19 806433 806433 1 + C T CESC 806441 + 806421 806461 41 GAACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGG GAACGTCCACGGTGCCCTGGCCCCCCTGGCCATCCCCTCGG < 41bp 1 0.282529541906051 1 0.0362357199192047 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806441 chr19:806433 synonymous SNV . 0 13 hm5C_associated_SNPs_18891 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 26bp
chr19 806433 806433 1 + C T CESC 806442 + 806422 806462 41 AACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGC AACGTCCACGGTGCCCTGGCCCCCCTGGCCATCCCCTCGGC < 41bp 1 0.312038218666627 1 0.0711410641670227 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806442 chr19:806433 synonymous SNV . 0 12 hm5C_associated_SNPs_18892 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 26bp
chr19 806433 806433 1 + C T CESC 806443 + 806423 806463 41 ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCG ACGTCCACGGTGCCCTGGCCCCCCTGGCCATCCCCTCGGCG < 41bp 1 0.430243112800745 1 0.0240912139415741 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806443 chr19:806433 synonymous SNV . 0 11 hm5C_associated_SNPs_18893 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 26bp
chr19 806433 806433 1 + C T CESC 806444 + 806424 806464 41 CGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG CGTCCACGGTGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG < 41bp 1 0.51900360473638 1 0.267359524965286 experiment 0.961992790527241 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806444 chr19:806433 synonymous SNV . 0 10 hm5C_associated_SNPs_18894 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 26bp
chr19 806433 806433 1 + C T CESC 806445 + 806425 806465 41 GTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGC GTCCACGGTGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGC < 41bp 1 0.530394065804957 1 0.326674073934555 experiment 0.939211868390087 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806445 chr19:806433 synonymous SNV . 0 9 hm5C_associated_SNPs_18895 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 26bp
chr19 806433 806433 1 + C T CESC 806446 + 806426 806466 41 TCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCG TCCACGGTGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCG < 41bp 1 0.780480445138258 1 0.447064697742462 experiment 0.439039109723484 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806446 chr19:806433 synonymous SNV . 0 8 hm5C_associated_SNPs_18896 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 26bp
chr19 806433 806433 1 + C T CESC 806450 + 806430 806470 41 CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGG CGGTGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGG < 41bp 1 0.0706006196808606 1 0.164982169866562 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806450 chr19:806433 synonymous SNV . 0 4 hm5C_associated_SNPs_18897 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 26bp
chr19 806433 806433 1 + C T CESC 806451 + 806431 806471 41 GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGGC GGTGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGGC < 41bp 1 0.217123267262963 1 0.0813136398792267 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806451 chr19:806433 synonymous SNV . 0 3 hm5C_associated_SNPs_18898 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 26bp
chr17 65822382 65822382 1 + A G CESC 65822366 + 65822346 65822386 41 ACGACGATGACTCCGATTATCCGGAGGAGATGGAAGACGAC ACGACGATGACTCCGATTATCCGGAGGAGATGGAAGGCGAC < 41bp 1 0.739167349596931 1 0.864122450351715 experiment 0.521665300806137 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65822366 chr17:65822382 nonsynonymous SNV 1.000 0 37 hm5C_associated_SNPs_18899 0 0 1 0 1 BPTF chr17:65822453 5'GT 65822453 Upstream 72bp
chr14 64676741 64676741 1 + C T CESC 64676732 + 64676712 64676752 41 AGCAGTACCGGCGGCTGGCCCGGGAGAACCGCACAGACACG AGCAGTACCGGCGGCTGGCCCGGGAGAACTGCACAGACACG < 41bp 1 0.568088952121049 1 0.93984442949295 experiment 0.863822095757902 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64676732 chr14:64676741 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_18900 0 0 0 0 2 SYNE2 chr14:64676660 3'AG 64676660 Downstream 82bp
chr14 64676741 64676741 1 + C T CESC 64676732 + 64676712 64676752 41 AGCAGTACCGGCGGCTGGCCCGGGAGAACCGCACAGACACG AGCAGTACCGGCGGCTGGCCCGGGAGAACTGCACAGACACG < 41bp 1 0.568088952121049 1 0.93984442949295 experiment 0.863822095757902 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64676732 chr14:64676741 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_18900 0 0 0 0 2 SYNE2 chr14:64676669 3'AG 64676669 Downstream 73bp
chr4 7026927 7026927 1 + G A CESC 7026933 + 7026913 7026953 41 AGGACCTGCCCGCCGAGGAGCTGTTTGCCTCCATCGCCACG AGGACCTGCCCGCCAAGGAGCTGTTTGCCTCCATCGCCACG < 41bp 1 0.21945569784386 1 0.0218005776405334 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBC1D14 ENSG00000132405 CDS Human protein_coding chr4:7026933 chr4:7026927 nonsynonymous SNV 0.788 0 15 hm5C_associated_SNPs_18901 0 0 1 0 1 TBC1D14 chr4:7026989 5'GT 7026989 Upstream 63bp
chr1 145368527 145368527 1 + T G CESC 145368536 + 145368516 145368556 41 GTCAATGTACTTTGAACTACCTGACTCATTCCAGCACTACA GTCAATGTACTGTGAACTACCTGACTCATTCCAGCACTACA < 41bp 1 0.0949150131136907 1 0.147605299949646 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBPF9 ENSG00000163386 CDS Human other chr1:145368536 chr1:145368527 nonsynonymous SNV . 0 12 hm5C_associated_SNPs_18902 0 0 0 0 1 NBPF9 chr1:145368441 3'AG 145368441 Downstream 87bp
chr1 145368527 145368527 1 + T G CESC 145368540 + 145368520 145368560 41 ATGTACTTTGAACTACCTGACTCATTCCAGCACTACAGAAG ATGTACTGTGAACTACCTGACTCATTCCAGCACTACAGAAG < 41bp 1 0.083380322000913 1 0.103927493095398 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NBPF9 ENSG00000163386 CDS Human other chr1:145368540 chr1:145368527 nonsynonymous SNV . 0 8 hm5C_associated_SNPs_18903 0 0 0 0 1 NBPF9 chr1:145368441 3'AG 145368441 Downstream 87bp
chr7 154720379 154720379 1 + G A CESC 154720373 + 154720353 154720393 41 GCCCGTATGTCTGGTGAAGTCAGTTGGATGCAAGCAGTTTG GCCCGTATGTCTGGTGAAGTCAGTTGAATGCAAGCAGTTTG < 41bp 1 0.639295739681456 1 0.648983001708984 experiment 0.721408520637089 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PAXIP1-AS2 ENSG00000214106 CDS Human antisense chr7:154720373 chr7:154720379 stopgain . 0 27 hm5C_associated_SNPs_18904 0 0 1 0 1 PAXIP1-AS2 chr7:154720477 5'GT 154720477 Upstream 99bp
chr19 47111774 47111774 1 + A T CESC 47111772 + 47111752 47111792 41 TGACTTCCCGGAGTTCCTGACCATGATGGCCAGAAAGATGA TGACTTCCCGGAGTTCCTGACCTTGATGGCCAGAAAGATGA < 41bp 1 0.0422204423293185 1 0.0439402759075165 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111772 chr19:47111774 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_18907 0 0 1 0 2 CALM3 chr19:47111739 3'AG 47111739 Downstream 36bp
chr19 47111774 47111774 1 + A T CESC 47111772 + 47111752 47111792 41 TGACTTCCCGGAGTTCCTGACCATGATGGCCAGAAAGATGA TGACTTCCCGGAGTTCCTGACCTTGATGGCCAGAAAGATGA < 41bp 1 0.0422204423293185 1 0.0439402759075165 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111772 chr19:47111774 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_18907 0 0 1 0 2 CALM3 chr19:47111845 5'GT 47111845 Upstream 72bp
chr19 47111774 47111774 1 + A T CESC 47111782 + 47111762 47111802 41 GAGTTCCTGACCATGATGGCCAGAAAGATGAAGGACACAGA GAGTTCCTGACCTTGATGGCCAGAAAGATGAAGGACACAGA < 41bp 1 0.577228471746535 1 0.737078666687012 experiment 0.845543056506931 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111782 chr19:47111774 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_18908 0 0 1 0 2 CALM3 chr19:47111739 3'AG 47111739 Downstream 36bp
chr19 47111774 47111774 1 + A T CESC 47111782 + 47111762 47111802 41 GAGTTCCTGACCATGATGGCCAGAAAGATGAAGGACACAGA GAGTTCCTGACCTTGATGGCCAGAAAGATGAAGGACACAGA < 41bp 1 0.577228471746535 1 0.737078666687012 experiment 0.845543056506931 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111782 chr19:47111774 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_18908 0 0 1 0 2 CALM3 chr19:47111845 5'GT 47111845 Upstream 72bp
chr5 21491503 21491503 1 + A C CESC 21491518 + 21491498 21491538 41 TCAGAAAACAAAGTCGTGGACAACCAGGCTGGGACCCAGGG TCAGACAACAAAGTCGTGGACAACCAGGCTGGGACCCAGGG < 41bp 1 0.140223121001934 1 0.088182270526886 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21491518 chr5:21491503 . . 0 6 hm5C_associated_SNPs_18909 0 0 1 0 1 GUSBP1 chr5:21491430 3'AG 21491430 Downstream 74bp
chr16 67006823 67006823 1 + C G CESC 67006809 + 67006789 67006829 41 CCCAATTCAACCAGGCGGAACAATATCTGGAGATCAACCCA CCCAATTCAACCAGGCGGAACAATATCTGGAGATGAACCCA < 41bp 1 0.254649301029406 1 0.422655344009399 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:67006809 chr16:67006823 nonsynonymous SNV 0.000 2 35 hm5C_associated_SNPs_18910 0 0 1 0 1 CES3 chr16:67006757 3'AG 67006757 Downstream 67bp
chr3 13672280 13672280 1 + G C CESC 13672281 + 13672261 13672301 41 CAGTGCTACTGCCGCCAGGGCTACCAGCTGGCTGAGGATGG CAGTGCTACTGCCGCCAGGCCTACCAGCTGGCTGAGGATGG < 41bp 1 0.113238510523221 1 0.0715832710266113 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13672281 chr3:13672280 nonsynonymous SNV 0.997 5 20 hm5C_associated_SNPs_18911 0 0 0 0 2 FBLN2 chr3:13672199 3'AG 13672199 Downstream 82bp
chr3 13672280 13672280 1 + G C CESC 13672281 + 13672261 13672301 41 CAGTGCTACTGCCGCCAGGGCTACCAGCTGGCTGAGGATGG CAGTGCTACTGCCGCCAGGCCTACCAGCTGGCTGAGGATGG < 41bp 1 0.113238510523221 1 0.0715832710266113 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13672281 chr3:13672280 nonsynonymous SNV 0.997 5 20 hm5C_associated_SNPs_18911 0 0 0 0 2 FBLN2 chr3:13672315 5'GT 13672315 Upstream 36bp
chr3 13672280 13672280 1 + G C CESC 13672285 + 13672265 13672305 41 GCTACTGCCGCCAGGGCTACCAGCTGGCTGAGGATGGGCAC GCTACTGCCGCCAGGCCTACCAGCTGGCTGAGGATGGGCAC < 41bp 1 0.597049865505337 1 0.396116673946381 experiment 0.805900268989326 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13672285 chr3:13672280 nonsynonymous SNV 0.997 5 16 hm5C_associated_SNPs_18912 0 0 0 0 2 FBLN2 chr3:13672199 3'AG 13672199 Downstream 82bp
chr3 13672280 13672280 1 + G C CESC 13672285 + 13672265 13672305 41 GCTACTGCCGCCAGGGCTACCAGCTGGCTGAGGATGGGCAC GCTACTGCCGCCAGGCCTACCAGCTGGCTGAGGATGGGCAC < 41bp 1 0.597049865505337 1 0.396116673946381 experiment 0.805900268989326 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13672285 chr3:13672280 nonsynonymous SNV 0.997 5 16 hm5C_associated_SNPs_18912 0 0 0 0 2 FBLN2 chr3:13672315 5'GT 13672315 Upstream 36bp
chr12 56214128 56214128 1 + G A CESC 56214120 + 56214100 56214140 41 CAGCCTCATTGCTAAGTGTACTGCTGCCGAAGTTGCCCCAG CAGCCTCATTGCTAAGTGTACTGCTGCCAAAGTTGCCCCAG < 41bp 1 0.699974035798595 1 0.320162653923035 experiment 0.600051928402811 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ORMDL2 ENSG00000123353;ENSG00000257390 CDS Human protein_coding chr12:56214120 chr12:56214128 synonymous SNV . 0 29 hm5C_associated_SNPs_18913 0 0 1 0 1 ORMDL2 chr12:56214044 3'AG 56214044 Downstream 85bp
chr12 56214128 56214128 1 + G A CESC 56214123 + 56214103 56214143 41 CCTCATTGCTAAGTGTACTGCTGCCGAAGTTGCCCCAGTTC CCTCATTGCTAAGTGTACTGCTGCCAAAGTTGCCCCAGTTC < 41bp 1 0.505334464887326 1 0.200903326272964 experiment 0.989331070225347 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ORMDL2 ENSG00000123353;ENSG00000257390 CDS Human protein_coding chr12:56214123 chr12:56214128 synonymous SNV . 0 26 hm5C_associated_SNPs_18914 0 0 1 0 1 ORMDL2 chr12:56214044 3'AG 56214044 Downstream 85bp
chr8 30332338 30332338 1 + C A CESC 30332319 + 30332299 30332339 41 GGACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACCT GGACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACAT < 41bp 1 0.0753779296155367 1 0.0503045320510864 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RBPMS ENSG00000157110 CDS Human protein_coding chr8:30332319 chr8:30332338 nonsynonymous SNV 0.999 4 40 hm5C_associated_SNPs_18915 0 0 1 0 2 RBPMS chr8:30332295 3'AG 30332295 Downstream 44bp
chr8 30332338 30332338 1 + C A CESC 30332319 + 30332299 30332339 41 GGACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACCT GGACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACAT < 41bp 1 0.0753779296155367 1 0.0503045320510864 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RBPMS ENSG00000157110 CDS Human protein_coding chr8:30332319 chr8:30332338 nonsynonymous SNV 0.999 4 40 hm5C_associated_SNPs_18915 0 0 1 0 2 RBPMS chr8:30332372 5'GT 30332372 Upstream 35bp
chr10 86273291 86273291 1 + C T CESC 86273305 + 86273285 86273325 41 CGAGGCCCGCAGTGAATGCTCAATCCAAGACATGCATCAGG CGAGGCTCGCAGTGAATGCTCAATCCAAGACATGCATCAGG < 41bp 1 0.186385559065757 1 0.108706533908844 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCSER2 ENSG00000107771 CDS Human protein_coding chr10:86273305 chr10:86273291 nonsynonymous SNV 0.986 2 7 hm5C_associated_SNPs_18918 0 0 0 0 1 CCSER2 chr10:86273205 3'AG 86273205 Downstream 87bp
chr12 111744758 111744758 1 + C T CESC 111744768 + 111744748 111744788 41 CTCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACA CTCGGGCCCTTGGCTGGAGGCCGCGCTGGCCTCCAAGGACA < 41bp 1 0.286920205552226 1 0.0884579420089722 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744768 chr12:111744758 nonsynonymous SNV 0.557 3 11 hm5C_associated_SNPs_18919 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 34bp
chr12 111744758 111744758 1 + C T CESC 111744769 + 111744749 111744789 41 TCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAG TCGGGCCCTTGGCTGGAGGCCGCGCTGGCCTCCAAGGACAG < 41bp 1 0.301735109300819 1 0.385061115026474 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744769 chr12:111744758 nonsynonymous SNV 0.557 3 10 hm5C_associated_SNPs_18920 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 34bp
chr12 111744758 111744758 1 + C T CESC 111744777 + 111744757 111744797 41 TCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCC TTGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCC < 41bp 1 0.0309383274525191 1 0.0620581209659576 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744777 chr12:111744758 nonsynonymous SNV 0.557 3 2 hm5C_associated_SNPs_18921 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 34bp
chr12 111744758 111744758 1 + C T CESC 111744778 + 111744758 111744798 41 CGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCT TGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCT < 41bp 1 0.572457102154101 1 0.965907216072083 experiment 0.855085795691799 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744778 chr12:111744758 nonsynonymous SNV 0.557 3 1 hm5C_associated_SNPs_18922 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 34bp
chr16 75682407 75682407 1 + C G CESC 75682389 + 75682369 75682409 41 CTGGGGGACGCGCCGGTGAGCCCCTCCTCCCAGAAGCTCAA CTGGGGGACGCGCCGGTGAGCCCCTCCTCCCAGAAGCTGAA < 41bp 1 0.292859196115044 1 0.064107209444046 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TERF2IP ENSG00000166848 CDS Human protein_coding chr16:75682389 chr16:75682407 synonymous SNV . 0 39 hm5C_associated_SNPs_18923 0 0 1 0 1 TERF2IP chr16:75682450 5'GT 75682450 Upstream 44bp
chr16 75682407 75682407 1 + C G CESC 75682394 + 75682374 75682414 41 GGACGCGCCGGTGAGCCCCTCCTCCCAGAAGCTCAAGCGGA GGACGCGCCGGTGAGCCCCTCCTCCCAGAAGCTGAAGCGGA < 41bp 1 0.087707239245096 1 0.551478385925293 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TERF2IP ENSG00000166848 CDS Human protein_coding chr16:75682394 chr16:75682407 synonymous SNV . 0 34 hm5C_associated_SNPs_18924 0 0 1 0 1 TERF2IP chr16:75682450 5'GT 75682450 Upstream 44bp
chr11 62553746 62553746 1 + C T CESC 62553759 + 62553739 62553779 41 AACGAGTCCTGTACCCACACCTGTCCACCTACTGGACAAAC AACGAGTTCTGTACCCACACCTGTCCACCTACTGGACAAAC < 41bp 1 0.0617355792250196 1 0.0974876582622528 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF6L ENSG00000162227 CDS Human protein_coding chr11:62553759 chr11:62553746 synonymous SNV . 0 8 hm5C_associated_SNPs_18925 0 0 1 0 1 TAF6L chr11:62553732 3'AG 62553732 Downstream 15bp
chr9 140110253 140110253 1 + G A CESC 140110236 + 140110216 140110256 41 TCCGAGCAGCCATCCAGGAGCGTGTGGCCCAGGGCCAGACT TCCGAGCAGCCATCCAGGAGCGTGTGGCCCAGGGCCAAACT < 41bp 1 0.280051634097061 1 0.137399047613144 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110236 chr9:140110253 synonymous SNV . 0 38 hm5C_associated_SNPs_18926 0 0 0 0 1 NDOR1 chr9:140110257 5'GT 140110257 Upstream 5bp
chr17 27047756 27047756 1 + G A CESC 27047736 + 27047716 27047756 41 TTCTCCCAGCTCCTGCCCCTCCTAAAGCTGAAGCCAAAGCG TTCTCCCAGCTCCTGCCCCTCCTAAAGCTGAAGCCAAAGCA < 41bp 1 0.191070606839904 1 0.141774833202362 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL23A ENSG00000198242 CDS Human protein_coding chr17:27047736 chr17:27047756 synonymous SNV . 0 41 hm5C_associated_SNPs_18927 0 0 0 0 1 RPL23A chr17:27047725 3'AG 27047725 Downstream 32bp
chr17 27047756 27047756 1 + G A CESC 27047737 + 27047717 27047757 41 TCTCCCAGCTCCTGCCCCTCCTAAAGCTGAAGCCAAAGCGA TCTCCCAGCTCCTGCCCCTCCTAAAGCTGAAGCCAAAGCAA < 41bp 1 0.782142877968238 1 0.720409989356995 experiment 0.435714244063523 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL23A ENSG00000198242 CDS Human protein_coding chr17:27047737 chr17:27047756 synonymous SNV . 0 40 hm5C_associated_SNPs_18928 0 0 0 0 1 RPL23A chr17:27047725 3'AG 27047725 Downstream 32bp
chr22 51117841 51117841 1 + T C CESC 51117853 + 51117833 51117873 41 CACATCTGTGCCCTCTACAACCAGGTGCGACTGTGTGTCCT CACATCTGCGCCCTCTACAACCAGGTGCGACTGTGTGTCCT < 41bp 1 0.237454965643912 1 0.679156541824341 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51117853 chr22:51117841 synonymous SNV . 0 9 hm5C_associated_SNPs_18931 0 0 0 0 1 SHANK3 chr22:51117856 5'GT 51117856 Upstream 16bp
chr7 128486419 128486419 1 + C T CESC 128486405 + 128486385 128486425 41 AGGTCGCTGTGCCCAAGAGCCCCTTCCGAGTGGGCGTGACC AGGTCGCTGTGCCCAAGAGCCCCTTCCGAGTGGGTGTGACC < 41bp 1 0.0220800264672262 1 0.0259375870227814 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486405 chr7:128486419 synonymous SNV . 0 35 hm5C_associated_SNPs_18932 0 0 1 0 2 FLNC chr7:128486355 3'AG 128486355 Downstream 65bp
chr7 128486419 128486419 1 + C T CESC 128486405 + 128486385 128486425 41 AGGTCGCTGTGCCCAAGAGCCCCTTCCGAGTGGGCGTGACC AGGTCGCTGTGCCCAAGAGCCCCTTCCGAGTGGGTGTGACC < 41bp 1 0.0220800264672262 1 0.0259375870227814 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486405 chr7:128486419 synonymous SNV . 0 35 hm5C_associated_SNPs_18932 0 0 1 0 2 FLNC chr7:128486517 5'GT 128486517 Upstream 99bp
chr1 45218872 45218872 1 + G C CESC 45218862 + 45218842 45218882 41 ATACCATTGAGGATGGTCAGCGAGGAGATGGAAGAGCAAGT ATACCATTGAGGATGGTCAGCGAGGAGATGCAAGAGCAAGT < 41bp 1 0.605742352013975 1 0.54876697063446 experiment 0.788515295972051 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF2C ENSG00000142945 CDS Human protein_coding chr1:45218862 chr1:45218872 nonsynonymous SNV 0.943 0 31 hm5C_associated_SNPs_18935 0 0 1 0 2 KIF2C chr1:45218804 3'AG 45218804 Downstream 69bp
chr1 45218872 45218872 1 + G C CESC 45218862 + 45218842 45218882 41 ATACCATTGAGGATGGTCAGCGAGGAGATGGAAGAGCAAGT ATACCATTGAGGATGGTCAGCGAGGAGATGCAAGAGCAAGT < 41bp 1 0.605742352013975 1 0.54876697063446 experiment 0.788515295972051 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF2C ENSG00000142945 CDS Human protein_coding chr1:45218862 chr1:45218872 nonsynonymous SNV 0.943 0 31 hm5C_associated_SNPs_18935 0 0 1 0 2 KIF2C chr1:45218926 5'GT 45218926 Upstream 55bp
chr14 61201637 61201637 1 + G A CESC 61201633 + 61201613 61201653 41 CACCAAATATCGGAACCCCTCCTTGAAGCTGATGGTGAATG CACCAAATATCGGAACCCCTCCTTAAAGCTGATGGTGAATG < 41bp 1 0.202350661688183 1 0.193663597106934 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61201633 chr14:61201637 synonymous SNV . 0 25 hm5C_associated_SNPs_18936 0 0 1 0 1 MNAT1 chr14:61201669 5'GT 61201669 Upstream 33bp
chr16 87723265 87723265 1 + G C CESC 87723254 + 87723234 87723274 41 TCTTGTGTCCCCATACAGGGCTGGAGTACCAGAGGCCGAAG TCTTGTGTCCCCATACAGGGCTGGAGTACCACAGGCCGAAG < 41bp 1 0.766843638277627 1 0.671821534633636 experiment 0.466312723444746 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control JPH3 ENSG00000154118 CDS Human protein_coding chr16:87723254 chr16:87723265 nonsynonymous SNV 0.874 3 32 hm5C_associated_SNPs_18939 0 0 1 0 1 JPH3 chr16:87723252 3'AG 87723252 Downstream 14bp
chr8 145139176 145139176 1 + C T CESC 145139185 + 145139165 145139205 41 CTTGACCTGCTCAATCTCTTCCAGACCTTCTGCCAGAAAGG CTTGACCTGCTTAATCTCTTCCAGACCTTCTGCCAGAAAGG < 41bp 1 0.476528410318516 1 0.266349792480469 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139185 chr8:145139176 synonymous SNV . 0 12 hm5C_associated_SNPs_18940 0 0 1 0 1 GPAA1 chr8:145139233 5'GT 145139233 Upstream 58bp
chr11 610312 610312 1 + C T CESC 610293 + 610273 610313 41 CAGGTGTTCTCCGAGCTGCCCTTTCCCAGTCACGTGCTTCC CAGGTGTTCTCCGAGCTGCCCTTTCCCAGTCACGTGCTTTC < 41bp 1 0.0301514485853676 1 0.0246386528015137 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:610293 chr11:610312 nonsynonymous SNV 0.021 0 40 hm5C_associated_SNPs_18941 0 0 1 0 1 PHRF1 chr11:610347 5'GT 610347 Upstream 36bp
chr16 16228308 16228308 1 + C T CESC 16228293 + 16228273 16228313 41 GAGTCTGCCGAAGGAGAGATCATCATCGATGGCATCAACAT GAGTCTGCCGAAGGAGAGATCATCATCGATGGCATTAACAT < 41bp 1 0.290880579834058 1 0.0588373839855194 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16228293 chr16:16228308 synonymous SNV . 0 36 hm5C_associated_SNPs_18942 0 0 1 0 1 ABCC1 chr16:16228365 5'GT 16228365 Upstream 58bp
chr6 3152763 3152763 1 + G A CESC 3152743 + 3152723 3152763 41 CTGCATTTGATGCCAGAAGGCAAACACAACCTGCATTTGCG CTGCATTTGATGCCAGAAGGCAAACACAACCTGCATTTGCA < 41bp 1 0.114808679517537 1 0.448444217443466 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BPHL ENSG00000137274 CDS Human protein_coding chr6:3152743 chr6:3152763 nonsynonymous SNV 0.987 4 41 hm5C_associated_SNPs_18943 0 0 1 0 1 BPHL chr6:3152722 3'AG 3152722 Downstream 42bp
chr19 10812884 10812884 1 + G C CESC 10812865 + 10812845 10812885 41 GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAATGAGA GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAATGACA < 41bp 1 0.181239987484996 1 0.04639932513237 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10812865 chr19:10812884 nonsynonymous SNV 0.815 0 40 hm5C_associated_SNPs_18944 0 0 1 0 2 QTRT1 chr19:10812792 3'AG 10812792 Downstream 93bp
chr19 10812884 10812884 1 + G C CESC 10812865 + 10812845 10812885 41 GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAATGAGA GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAATGACA < 41bp 1 0.181239987484996 1 0.04639932513237 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10812865 chr19:10812884 nonsynonymous SNV 0.815 0 40 hm5C_associated_SNPs_18944 0 0 1 0 2 QTRT1 chr19:10812930 5'GT 10812930 Upstream 47bp
chr13 76414531 76414531 1 + C T CESC 76414530 + 76414510 76414550 41 CTCTGATAACTGGTTAGCTTCCAGTTCCAACCATCAGTGCC CTCTGATAACTGGTTAGCTTCTAGTTCCAACCATCAGTGCC < 41bp 1 0.432087844721195 1 0.156889468431473 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76414530 chr13:76414531 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_18946 0 0 1 0 1 LMO7 chr13:76414527 3'AG 76414527 Downstream 5bp
chr2 173334029 173334029 1 + C T CESC 173334009 + 173333989 173334029 41 GTGATGGGCGATTGAGAGGCCATGAGAAATTTGGCTCTTGC GTGATGGGCGATTGAGAGGCCATGAGAAATTTGGCTCTTGT < 41bp 1 0.540000438950351 1 0.437431335449219 experiment 0.919999122099298 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173334009 chr2:173334029 synonymous SNV . 0 41 hm5C_associated_SNPs_18947 0 0 1 0 1 ITGA6 chr2:173334108 5'GT 173334108 Upstream 80bp
chr9 96398787 96398787 1 + G A CESC 96398804 + 96398784 96398824 41 GCTGCGGAGCCGGACCTTTCCCAGGTGGGCTGGCCTTCCTG GCTACGGAGCCGGACCTTTCCCAGGTGGGCTGGCCTTCCTG < 41bp 1 0.764927087417173 1 0.786829113960266 experiment 0.470145825165653 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96398804 chr9:96398787 synonymous SNV . 0 4 hm5C_associated_SNPs_18948 0 0 1 0 2 PHF2 chr9:96398693 3'AG 96398693 Downstream 95bp
chr9 96398787 96398787 1 + G A CESC 96398804 + 96398784 96398824 41 GCTGCGGAGCCGGACCTTTCCCAGGTGGGCTGGCCTTCCTG GCTACGGAGCCGGACCTTTCCCAGGTGGGCTGGCCTTCCTG < 41bp 1 0.764927087417173 1 0.786829113960266 experiment 0.470145825165653 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96398804 chr9:96398787 synonymous SNV . 0 4 hm5C_associated_SNPs_18948 0 0 1 0 2 PHF2 chr9:96398807 5'GT 96398807 Upstream 21bp
chr3 178947162 178947162 1 + G C CESC 178947150 + 178947130 178947170 41 ACTATTATGCAAATTCAGTGCAAAGGCGGCTTGAAAGGTGC ACTATTATGCAAATTCAGTGCAAAGGCGGCTTCAAAGGTGC < 41bp 1 0.465004513127981 1 0.224244803190231 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178947150 chr3:178947162 nonsynonymous SNV 0.970 2 33 hm5C_associated_SNPs_18949 0 0 0 0 1 PIK3CA chr3:178947230 5'GT 178947230 Upstream 69bp
chr13 113729377 113729377 1 + C T CESC 113729386 + 113729366 113729406 41 AACAAGCACTACGCGGTAGACTCCATCCGCCCAAAGTGCCA AACAAGCACTATGCGGTAGACTCCATCCGCCCAAAGTGCCA < 41bp 1 0.648374047668475 1 0.867423892021179 experiment 0.703251904663051 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113729386 chr13:113729377 synonymous SNV . 0 12 hm5C_associated_SNPs_18951 0 0 1 0 1 MCF2L chr13:113729312 3'AG 113729312 Downstream 66bp
chr16 29828302 29828302 1 + G A CESC 29828289 + 29828269 29828309 41 CCAGAGCGAAGAGGAGAGATCCGATGAGGAGCCGGAGGCCA CCAGAGCGAAGAGGAGAGATCCGATGAGGAGCCAGAGGCCA < 41bp 1 0.476527953299132 1 0.145058065652847 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828289 chr16:29828302 synonymous SNV . 0 34 hm5C_associated_SNPs_18953 0 0 1 0 1 PAGR1 chr16:29828328 5'GT 29828328 Upstream 27bp
chr16 29828302 29828302 1 + G A CESC 29828300 + 29828280 29828320 41 AGGAGAGATCCGATGAGGAGCCGGAGGCCAAAGAAGAGGAA AGGAGAGATCCGATGAGGAGCCAGAGGCCAAAGAAGAGGAA < 41bp 1 0.531813233023981 1 0.456775218248367 experiment 0.936373533952038 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828300 chr16:29828302 synonymous SNV . 0 23 hm5C_associated_SNPs_18954 0 0 1 0 1 PAGR1 chr16:29828328 5'GT 29828328 Upstream 27bp
chr16 29828302 29828302 1 + G A CESC 29828301 + 29828281 29828321 41 GGAGAGATCCGATGAGGAGCCGGAGGCCAAAGAAGAGGAAG GGAGAGATCCGATGAGGAGCCAGAGGCCAAAGAAGAGGAAG < 41bp 1 0.700109582050768 1 0.813240528106689 experiment 0.599780835898465 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828301 chr16:29828302 synonymous SNV . 0 22 hm5C_associated_SNPs_18955 0 0 1 0 1 PAGR1 chr16:29828328 5'GT 29828328 Upstream 27bp
chr16 29828302 29828302 1 + G A CESC 29828307 + 29828287 29828327 41 ATCCGATGAGGAGCCGGAGGCCAAAGAAGAGGAAGAGGAAA ATCCGATGAGGAGCCAGAGGCCAAAGAAGAGGAAGAGGAAA < 41bp 1 0.385064400959298 1 0.581096827983856 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828307 chr16:29828302 synonymous SNV . 0 16 hm5C_associated_SNPs_18956 0 0 1 0 1 PAGR1 chr16:29828328 5'GT 29828328 Upstream 27bp
chr9 135929311 135929311 1 + C T CESC 135929296 + 135929276 135929316 41 ATGCCAAGATTTATCAAGTCCTCGATTTCCGAATCCGTTGT ATGCCAAGATTTATCAAGTCCTCGATTTCCGAATCTGTTGT < 41bp 1 0.724094991434961 1 0.940017342567444 experiment 0.551810017130078 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135929296 chr9:135929311 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_18957 0 0 1 0 2 GTF3C5 chr9:135929215 3'AG 135929215 Downstream 97bp
chr9 135929311 135929311 1 + C T CESC 135929296 + 135929276 135929316 41 ATGCCAAGATTTATCAAGTCCTCGATTTCCGAATCCGTTGT ATGCCAAGATTTATCAAGTCCTCGATTTCCGAATCTGTTGT < 41bp 1 0.724094991434961 1 0.940017342567444 experiment 0.551810017130078 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135929296 chr9:135929311 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_18957 0 0 1 0 2 GTF3C5 chr9:135929329 5'GT 135929329 Upstream 19bp
chr1 6505917 6505917 1 + A G CESC 6505928 + 6505908 6505948 41 GCCTCCTGTAGGACCACAGGCAGCTGACATCTACATGCAGA GCCTCCTGTGGGACCACAGGCAGCTGACATCTACATGCAGA < 41bp 1 0.363882265794504 1 0.531965255737305 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ESPN ENSG00000187017 CDS Human protein_coding chr1:6505928 chr1:6505917 synonymous SNV . 0 10 hm5C_associated_SNPs_18960 0 0 1 0 1 ESPN chr1:6505995 5'GT 6505995 Upstream 79bp
chr3 158015851 158015851 1 + G A CESC 158015833 + 158015813 158015853 41 ACTCTTCTATTTTAGGGAATCTGGAAACATCAAAGCTGGAT ACTCTTCTATTTTAGGGAATCTGGAAACATCAAAGCTGAAT < 41bp 1 0.70049749198477 1 0.734894514083862 experiment 0.599005016030461 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RSRC1 ENSG00000174891 CDS Human protein_coding chr3:158015833 chr3:158015851 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_18962 0 0 1 0 2 RSRC1 chr3:158015828 3'AG 158015828 Downstream 24bp
chr3 158015851 158015851 1 + G A CESC 158015833 + 158015813 158015853 41 ACTCTTCTATTTTAGGGAATCTGGAAACATCAAAGCTGGAT ACTCTTCTATTTTAGGGAATCTGGAAACATCAAAGCTGAAT < 41bp 1 0.70049749198477 1 0.734894514083862 experiment 0.599005016030461 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RSRC1 ENSG00000174891 CDS Human protein_coding chr3:158015833 chr3:158015851 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_18962 0 0 1 0 2 RSRC1 chr3:158015864 5'GT 158015864 Upstream 14bp
chr19 50753910 50753910 1 + C T CESC 50753921 + 50753901 50753941 41 CTGCGGGATCAGGCCGACTTCAGTGTTCTCCACTACGCGGG CTGCGGGATTAGGCCGACTTCAGTGTTCTCCACTACGCGGG < 41bp 1 0.669129537810887 1 0.621539950370789 experiment 0.661740924378226 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50753921 chr19:50753910 stopgain 0.999 0 10 hm5C_associated_SNPs_18963 0 0 0 0 1 MYH14 chr19:50753945 5'GT 50753945 Upstream 36bp
chrX 47063090 47063090 1 + G A CESC 47063072 + 47063052 47063092 41 CAAATCTGAATCGACAGTTTCTTTTCCGGCCCTGGGATGTC CAAATCTGAATCGACAGTTTCTTTTCCGGCCCTGGGATATC < 41bp 1 0.0335875435124333 1 0.0119623839855194 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBA1 ENSG00000130985 CDS Human protein_coding chrX:47063072 chrX:47063090 nonsynonymous SNV 0.999 1 39 hm5C_associated_SNPs_18964 0 0 1 0 1 UBA1 chrX:47063095 5'GT 47063095 Upstream 6bp
chr2 46608813 46608813 1 + G T CESC 46608795 + 46608775 46608815 41 AGTCCGGCCATGGTAGCCCTCTCCAACAAGCTGAAGCTGAA AGTCCGGCCATGGTAGCCCTCTCCAACAAGCTGAAGCTTAA < 41bp 1 0.725533265985955 1 0.977644562721252 experiment 0.548933468028091 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46608795 chr2:46608813 synonymous SNV . 0 39 hm5C_associated_SNPs_18965 0 0 0 0 2 EPAS1 chr2:46608735 3'AG 46608735 Downstream 79bp
chr2 46608813 46608813 1 + G T CESC 46608795 + 46608775 46608815 41 AGTCCGGCCATGGTAGCCCTCTCCAACAAGCTGAAGCTGAA AGTCCGGCCATGGTAGCCCTCTCCAACAAGCTGAAGCTTAA < 41bp 1 0.725533265985955 1 0.977644562721252 experiment 0.548933468028091 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46608795 chr2:46608813 synonymous SNV . 0 39 hm5C_associated_SNPs_18965 0 0 0 0 2 EPAS1 chr2:46608861 5'GT 46608861 Upstream 49bp
chr1 201970613 201970613 1 + C G CESC 201970604 + 201970584 201970624 41 GGTGATCAGGATCAGTTTGACAGTTTTCTCAAGGTATAGTC GGTGATCAGGATCAGTTTGACAGTTTTCTGAAGGTATAGTC < 41bp 1 0.41875779561551 1 0.143868148326874 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNPEP ENSG00000176393 CDS Human protein_coding chr1:201970604 chr1:201970613 synonymous SNV . 0 30 hm5C_associated_SNPs_18966 0 0 1 0 1 RNPEP chr1:201970616 5'GT 201970616 Upstream 4bp
chr11 46403634 46403634 1 + C A CESC 46403637 + 46403617 46403657 41 CGAGGCTTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCT CGAGGCTTCCTCCTCCTAACCCTCCTCGCCCTGCTGGCGCT < 41bp 1 0.0729340471761978 1 0.131347745656967 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403637 chr11:46403634 synonymous SNV . 0 18 hm5C_associated_SNPs_18967 0 0 1 0 2 MDK chr11:46403607 3'AG 46403607 Downstream 28bp
chr11 46403634 46403634 1 + C A CESC 46403637 + 46403617 46403657 41 CGAGGCTTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCT CGAGGCTTCCTCCTCCTAACCCTCCTCGCCCTGCTGGCGCT < 41bp 1 0.0729340471761978 1 0.131347745656967 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403637 chr11:46403634 synonymous SNV . 0 18 hm5C_associated_SNPs_18967 0 0 1 0 2 MDK chr11:46403683 5'GT 46403683 Upstream 50bp
chr11 46403634 46403634 1 + C A CESC 46403638 + 46403618 46403658 41 GAGGCTTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCTC GAGGCTTCCTCCTCCTAACCCTCCTCGCCCTGCTGGCGCTC < 41bp 1 0.506667173844755 1 0.554145395755768 experiment 0.986665652310489 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403638 chr11:46403634 synonymous SNV . 0 17 hm5C_associated_SNPs_18968 0 0 1 0 2 MDK chr11:46403607 3'AG 46403607 Downstream 28bp
chr11 46403634 46403634 1 + C A CESC 46403638 + 46403618 46403658 41 GAGGCTTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCTC GAGGCTTCCTCCTCCTAACCCTCCTCGCCCTGCTGGCGCTC < 41bp 1 0.506667173844755 1 0.554145395755768 experiment 0.986665652310489 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403638 chr11:46403634 synonymous SNV . 0 17 hm5C_associated_SNPs_18968 0 0 1 0 2 MDK chr11:46403683 5'GT 46403683 Upstream 50bp
chr11 46403634 46403634 1 + C A CESC 46403643 + 46403623 46403663 41 TTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCTCACCTC TTCCTCCTCCTAACCCTCCTCGCCCTGCTGGCGCTCACCTC < 41bp 1 0.526895882647763 1 0.700423359870911 experiment 0.946208234704473 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403643 chr11:46403634 synonymous SNV . 0 12 hm5C_associated_SNPs_18969 0 0 1 0 2 MDK chr11:46403607 3'AG 46403607 Downstream 28bp
chr11 46403634 46403634 1 + C A CESC 46403643 + 46403623 46403663 41 TTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCTCACCTC TTCCTCCTCCTAACCCTCCTCGCCCTGCTGGCGCTCACCTC < 41bp 1 0.526895882647763 1 0.700423359870911 experiment 0.946208234704473 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403643 chr11:46403634 synonymous SNV . 0 12 hm5C_associated_SNPs_18969 0 0 1 0 2 MDK chr11:46403683 5'GT 46403683 Upstream 50bp
chr19 49644755 49644755 1 + G A CESC 49644738 + 49644718 49644758 41 GGGCTAGCCAAGCTGACAGGCCCAGGAGACAAGGACCGAAG GGGCTAGCCAAGCTGACAGGCCCAGGAGACAAGGACCAAAG < 41bp 1 0.198699881957287 1 0.267313539981842 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49644738 chr19:49644755 nonsynonymous SNV 0.999 2 38 hm5C_associated_SNPs_18970 0 0 0 0 2 PPFIA3 chr19:49644677 3'AG 49644677 Downstream 79bp
chr19 49644755 49644755 1 + G A CESC 49644738 + 49644718 49644758 41 GGGCTAGCCAAGCTGACAGGCCCAGGAGACAAGGACCGAAG GGGCTAGCCAAGCTGACAGGCCCAGGAGACAAGGACCAAAG < 41bp 1 0.198699881957287 1 0.267313539981842 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49644738 chr19:49644755 nonsynonymous SNV 0.999 2 38 hm5C_associated_SNPs_18970 0 0 0 0 2 PPFIA3 chr19:49644770 5'GT 49644770 Upstream 16bp
chr4 79420917 79420917 1 + A C CESC 79420912 + 79420892 79420932 41 GAAGAAGCTGCATACCAAGTCCGGGAACCCGCAGGCCCAGA GAAGAAGCTGCATACCAAGTCCGGGCACCCGCAGGCCCAGA < 41bp 1 0.18943849298484 1 0.593769907951355 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79420912 chr4:79420917 nonsynonymous SNV 0.934 3 26 hm5C_associated_SNPs_18971 0 0 1 0 1 FRAS1 chr4:79420875 3'AG 79420875 Downstream 43bp
chr20 33764025 33764025 1 + G C CESC 33764041 + 33764021 33764061 41 TCTAGAGCCCATGTCTTCTTCGAAGTGGCTGTGAATGGGAG TCTACAGCCCATGTCTTCTTCGAAGTGGCTGTGAATGGGAG < 41bp 1 0.651389513443758 1 0.852312684059143 experiment 0.697220973112485 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PROCR ENSG00000101000 CDS Human protein_coding chr20:33764041 chr20:33764025 nonsynonymous SNV 0.439 0 5 hm5C_associated_SNPs_18972 0 0 1 0 1 PROCR chr20:33763971 3'AG 33763971 Downstream 55bp
chr1 12027073 12027073 1 + C T CESC 12027067 + 12027047 12027087 41 TGCCCGGATGTCTATTGGTTCCCCATCTTCACGGAGGTGGC TGCCCGGATGTCTATTGGTTCCCCATTTTCACGGAGGTGGC < 41bp 1 0.556278100120901 1 0.0671496689319611 experiment 0.887443799758198 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027067 chr1:12027073 synonymous SNV . 0 27 hm5C_associated_SNPs_18973 0 0 1 0 2 PLOD1 chr1:12027044 3'AG 12027044 Downstream 30bp
chr1 12027073 12027073 1 + C T CESC 12027067 + 12027047 12027087 41 TGCCCGGATGTCTATTGGTTCCCCATCTTCACGGAGGTGGC TGCCCGGATGTCTATTGGTTCCCCATTTTCACGGAGGTGGC < 41bp 1 0.556278100120901 1 0.0671496689319611 experiment 0.887443799758198 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027067 chr1:12027073 synonymous SNV . 0 27 hm5C_associated_SNPs_18973 0 0 1 0 2 PLOD1 chr1:12027148 5'GT 12027148 Upstream 76bp
chr1 12027073 12027073 1 + C T CESC 12027087 + 12027067 12027107 41 CCCCATCTTCACGGAGGTGGCCTGTGATGAGCTGGTGGAGG CCCCATTTTCACGGAGGTGGCCTGTGATGAGCTGGTGGAGG < 41bp 1 0.18632275814015 1 0.0786432921886444 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027087 chr1:12027073 synonymous SNV . 0 7 hm5C_associated_SNPs_18974 0 0 1 0 2 PLOD1 chr1:12027044 3'AG 12027044 Downstream 30bp
chr1 12027073 12027073 1 + C T CESC 12027087 + 12027067 12027107 41 CCCCATCTTCACGGAGGTGGCCTGTGATGAGCTGGTGGAGG CCCCATTTTCACGGAGGTGGCCTGTGATGAGCTGGTGGAGG < 41bp 1 0.18632275814015 1 0.0786432921886444 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027087 chr1:12027073 synonymous SNV . 0 7 hm5C_associated_SNPs_18974 0 0 1 0 2 PLOD1 chr1:12027148 5'GT 12027148 Upstream 76bp
chr22 38021921 38021921 1 + C T CESC 38021903 + 38021883 38021923 41 CCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAG CCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTTAG < 41bp 1 0.629446147063209 1 0.075468510389328 experiment 0.741107705873582 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38021903 chr22:38021921 nonsynonymous SNV 0.986 1 39 hm5C_associated_SNPs_18975 0 0 1 0 1 GGA1 chr22:38021956 5'GT 38021956 Upstream 36bp
chrX 70516458 70516458 1 + G C CESC 70516440 + 70516420 70516460 41 CTCGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT CTCGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATCAT < 41bp 1 0.124023258609763 1 0.0787816643714905 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516440 chrX:70516458 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_18976 0 0 1 0 2 NONO chrX:70516415 3'AG 70516415 Downstream 44bp
chrX 70516458 70516458 1 + G C CESC 70516440 + 70516420 70516460 41 CTCGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT CTCGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATCAT < 41bp 1 0.124023258609763 1 0.0787816643714905 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516440 chrX:70516458 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_18976 0 0 1 0 2 NONO chrX:70516510 5'GT 70516510 Upstream 53bp
chr12 4459046 4459046 1 + C G CESC 4459031 + 4459011 4459051 41 CAAATTTTGCAAAGATATGACGGTAAAGTATGACTCAAGAC CAAATTTTGCAAAGATATGACGGTAAAGTATGACTGAAGAC < 41bp 1 0.427050986312646 1 0.385828256607056 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TIGAR ENSG00000078237 CDS Human protein_coding chr12:4459031 chr12:4459046 stopgain 0.720 0 36 hm5C_associated_SNPs_18977 0 0 1 0 1 TIGAR chr12:4458985 3'AG 4458985 Downstream 62bp
chr12 22811985 22811985 1 + C T CESC 22811993 + 22811973 22812013 41 ATCCATGCTATTCATGCACACAATGGCTGGATCCCCAAATC ATCCATGCTATTTATGCACACAATGGCTGGATCCCCAAATC < 41bp 1 0.416968829746923 1 0.241540610790253 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ETNK1 ENSG00000139163 CDS Human protein_coding chr12:22811993 chr12:22811985 nonsynonymous SNV 0.997 3 13 hm5C_associated_SNPs_18978 0 0 1 0 1 ETNK1 chr12:22811948 3'AG 22811948 Downstream 38bp
chr11 65830913 65830913 1 + G A CESC 65830898 + 65830878 65830918 41 CTGAGGAAGAAGAGATTGATCGGACCCCTTGGGGGGAACTG CTGAGGAAGAAGAGATTGATCGGACCCCTTGGGGGAAACTG < 41bp 1 0.389863722799389 1 0.41365322470665 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65830898 chr11:65830913 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_18979 0 0 1 0 1 SF3B2 chr11:65830871 3'AG 65830871 Downstream 43bp
chr11 65830913 65830913 1 + G A CESC 65830902 + 65830882 65830922 41 GGAAGAAGAGATTGATCGGACCCCTTGGGGGGAACTGGAAC GGAAGAAGAGATTGATCGGACCCCTTGGGGGAAACTGGAAC < 41bp 1 0.197388592958821 1 0.148360282182693 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65830902 chr11:65830913 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_18980 0 0 1 0 1 SF3B2 chr11:65830871 3'AG 65830871 Downstream 43bp
chr11 65830913 65830913 1 + G A CESC 65830903 + 65830883 65830923 41 GAAGAAGAGATTGATCGGACCCCTTGGGGGGAACTGGAACC GAAGAAGAGATTGATCGGACCCCTTGGGGGAAACTGGAACC < 41bp 1 0.0715280073377103 1 0.210121423006058 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65830903 chr11:65830913 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_18981 0 0 1 0 1 SF3B2 chr11:65830871 3'AG 65830871 Downstream 43bp
chr11 65830913 65830913 1 + G A CESC 65830905 + 65830885 65830925 41 AGAAGAGATTGATCGGACCCCTTGGGGGGAACTGGAACCAT AGAAGAGATTGATCGGACCCCTTGGGGGAAACTGGAACCAT < 41bp 1 0.427509903137906 1 0.254217267036438 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65830905 chr11:65830913 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_18982 0 0 1 0 1 SF3B2 chr11:65830871 3'AG 65830871 Downstream 43bp
chr11 65830913 65830913 1 + G A CESC 65830926 + 65830906 65830946 41 TTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAG TTGGGGGAAACTGGAACCATCTGATGAAGAATCCTCAGAAG < 41bp 1 0.579631873753726 1 0.731970369815826 experiment 0.840736252492549 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65830926 chr11:65830913 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_18983 0 0 1 0 1 SF3B2 chr11:65830871 3'AG 65830871 Downstream 43bp
chr20 60962962 60962962 1 + C T CESC 60962981 + 60962961 60963001 41 TCGTAGGATGGTGAGTGTTTCCCTGGGCTTTGCTCATCACT TTGTAGGATGGTGAGTGTTTCCCTGGGCTTTGCTCATCACT < 41bp 1 0.269705185472068 1 0.188519328832626 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS21 ENSG00000171858 CDS Human protein_coding chr20:60962981 chr20:60962962 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_18985 0 0 1 0 2 RPS21 chr20:60962899 3'AG 60962899 Downstream 64bp
chr20 60962962 60962962 1 + C T CESC 60962981 + 60962961 60963001 41 TCGTAGGATGGTGAGTGTTTCCCTGGGCTTTGCTCATCACT TTGTAGGATGGTGAGTGTTTCCCTGGGCTTTGCTCATCACT < 41bp 1 0.269705185472068 1 0.188519328832626 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS21 ENSG00000171858 CDS Human protein_coding chr20:60962981 chr20:60962962 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_18985 0 0 1 0 2 RPS21 chr20:60962970 5'GT 60962970 Upstream 9bp
chr20 33764059 33764059 1 + G C CESC 33764041 + 33764021 33764061 41 TCTAGAGCCCATGTCTTCTTCGAAGTGGCTGTGAATGGGAG TCTAGAGCCCATGTCTTCTTCGAAGTGGCTGTGAATGGCAG < 41bp 1 0.744160176822424 1 0.831138491630554 experiment 0.511679646355152 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PROCR ENSG00000101000 CDS Human protein_coding chr20:33764041 chr20:33764059 synonymous SNV . 0 39 hm5C_associated_SNPs_18986 0 0 1 0 1 PROCR chr20:33763971 3'AG 33763971 Downstream 89bp
chr9 124534964 124534964 1 + C T CESC 124534965 + 124534945 124534985 41 TCACAAGGTCCTCCGGGGTCCAGCCCTCACCTGCCCGCAGC TCACAAGGTCCTCCGGGGTTCAGCCCTCACCTGCCCGCAGC < 41bp 1 0.312539889601324 1 0.172138780355453 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124534965 chr9:124534964 synonymous SNV . 0 20 hm5C_associated_SNPs_18987 0 0 1 0 2 DAB2IP chr9:124534886 3'AG 124534886 Downstream 79bp
chr9 124534964 124534964 1 + C T CESC 124534965 + 124534945 124534985 41 TCACAAGGTCCTCCGGGGTCCAGCCCTCACCTGCCCGCAGC TCACAAGGTCCTCCGGGGTTCAGCCCTCACCTGCCCGCAGC < 41bp 1 0.312539889601324 1 0.172138780355453 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124534965 chr9:124534964 synonymous SNV . 0 20 hm5C_associated_SNPs_18987 0 0 1 0 2 DAB2IP chr9:124534952 3'AG 124534952 Downstream 13bp
chr16 67917564 67917564 1 + C T CESC 67917568 + 67917548 67917588 41 ACCCTGCCCGCTCTCCCAGCCTGTGCTCCTTTCCCTCATCC ACCCTGCCCGCTCTCCTAGCCTGTGCTCCTTTCCCTCATCC < 41bp 1 0.377412122548851 1 0.184064865112305 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67917568 chr16:67917564 stopgain 0.997 1 17 hm5C_associated_SNPs_18988 0 0 1 0 2 EDC4 chr16:67917471 3'AG 67917471 Downstream 94bp
chr16 67917564 67917564 1 + C T CESC 67917568 + 67917548 67917588 41 ACCCTGCCCGCTCTCCCAGCCTGTGCTCCTTTCCCTCATCC ACCCTGCCCGCTCTCCTAGCCTGTGCTCCTTTCCCTCATCC < 41bp 1 0.377412122548851 1 0.184064865112305 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67917568 chr16:67917564 stopgain 0.997 1 17 hm5C_associated_SNPs_18988 0 0 1 0 2 EDC4 chr16:67917634 5'GT 67917634 Upstream 71bp
chr16 55527078 55527078 1 + C G CESC 55527074 + 55527054 55527094 41 CAGGTGTTCTCCCCAGGGGCCTCTCCTGACATTGACCTTGG CAGGTGTTCTCCCCAGGGGCCTCTGCTGACATTGACCTTGG < 41bp 1 0.253752260012104 1 0.10796594619751 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP2 ENSG00000087245 CDS Human protein_coding chr16:55527074 chr16:55527078 nonsynonymous SNV 0.930 0 25 hm5C_associated_SNPs_18990 0 0 0 0 1 MMP2 chr16:55527070 3'AG 55527070 Downstream 9bp
chr12 52695763 52695763 1 + G C CESC 52695783 + 52695763 52695803 41 GCCCGGCCGCTGCTGCATCACCGCCGCCCCCTACCGTGGCA CCCCGGCCGCTGCTGCATCACCGCCGCCCCCTACCGTGGCA < 41bp 1 0.40910690308035 1 0.150015950202942 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KRT86 ENSG00000170442 CDS Human protein_coding chr12:52695783 chr12:52695763 synonymous SNV . 0 1 hm5C_associated_SNPs_18991 0 0 0 0 1 KRT86 chr12:52695697 3'AG 52695697 Downstream 67bp
chr1 82372833 82372833 1 + G A CESC 82372824 + 82372804 82372844 41 TTGAGAGCGCTAACTATGGTCGGACGGATGACAAGATTTGT TTGAGAGCGCTAACTATGGTCGGACGGATAACAAGATTTGT < 41bp 1 0.270673629203676 1 0.36276775598526 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRL2 ENSG00000117114 CDS Human protein_coding chr1:82372824 chr1:82372833 nonsynonymous SNV 0.998 2 30 hm5C_associated_SNPs_18993 0 0 1 0 1 ADGRL2 chr1:82372915 5'GT 82372915 Upstream 83bp
chr11 65780823 65780823 1 + C T CESC 65780832 + 65780812 65780852 41 CTTGTGGTTCCCTGGCAGAACTCCTCTCAGCTCCTAAAGCA CTTGTGGTTCCTTGGCAGAACTCCTCTCAGCTCCTAAAGCA < 41bp 1 0.394533465413283 1 0.169637233018875 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CST6 ENSG00000175315 CDS Human protein_coding chr11:65780832 chr11:65780823 synonymous SNV . 0 12 hm5C_associated_SNPs_18994 0 0 0 0 1 CST6 chr11:65780788 3'AG 65780788 Downstream 36bp
chr1 44878352 44878352 1 + G A CESC 44878350 + 44878330 44878370 41 TGCTGTCTCTGGCCTCATTTCTGATCGGGAAGCCTCATCTA TGCTGTCTCTGGCCTCATTTCTAATCGGGAAGCCTCATCTA < 41bp 1 0.358260324961922 1 0.6260666847229 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878350 chr1:44878352 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_18999 0 0 1 0 1 RNF220 chr1:44878394 5'GT 44878394 Upstream 43bp
chr1 44878392 44878392 1 + G A CESC 44878373 + 44878353 44878393 41 ATCGGGAAGCCTCATCTAGCCCAGAGGATCGGAATGACAGA ATCGGGAAGCCTCATCTAGCCCAGAGGATCGGAATGACAAA < 41bp 1 0.492423395146936 1 0.165378391742706 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878373 chr1:44878392 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_19002 0 0 1 0 1 RNF220 chr1:44878394 5'GT 44878394 Upstream 3bp
chr1 44878392 44878392 1 + G A CESC 44878382 + 44878362 44878402 41 CCTCATCTAGCCCAGAGGATCGGAATGACAGATGTAAGTAC CCTCATCTAGCCCAGAGGATCGGAATGACAAATGTAAGTAC < 41bp 1 0.734474923565279 1 0.573281049728394 experiment 0.531050152869442 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878382 chr1:44878392 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_19003 0 0 1 0 1 RNF220 chr1:44878394 5'GT 44878394 Upstream 3bp
chr16 1889330 1889330 1 - G A CESC 1889321 - 1889301 1889341 41 TGCTGATTGATCTGACTGATCACACAGGCACCCTTCATTCC TGCTGATTGATTTGACTGATCACACAGGCACCCTTCATTCC < 41bp 1 0.471848895907267 1 0.0292732119560242 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MEIOB ENSG00000162039 CDS Human protein_coding chr16:1889321 chr16:1889330 synonymous SNV . 0 12 hm5C_associated_SNPs_19004 0 0 1 0 1 MEIOB chr16:1889256 5'GT 1889256 Upstream 75bp
chr16 1889330 1889330 1 + G A CESC 1889342 + 1889322 1889362 41 ATCAGTCAGATCAATCAGCACATGGAAACTGAGAAAGACAG ATCAGTCAAATCAATCAGCACATGGAAACTGAGAAAGACAG < 41bp 1 0.44663081377145 1 0.149183601140976 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MEIOB ENSG00000162039 CDS Human other chr16:1889342 chr16:1889330 synonymous SNV . 0 9 hm5C_associated_SNPs_19005 0 0 0 0 1 FAHD1;MEIOB chr16:1889263 3'AG 1889263 Downstream 68bp
chr16 57254652 57254652 1 + G A CESC 57254661 + 57254641 57254681 41 CAGTTTTAAAAGAAGGTAGACAGCTGACCTATGAGAAAGTG CAGTTTTAAAAAAAGGTAGACAGCTGACCTATGAGAAAGTG < 41bp 1 0.236212455100597 1 0.54911482334137 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57254661 chr16:57254652 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_19007 0 0 1 0 1 RSPRY1 chr16:57254644 3'AG 57254644 Downstream 9bp
chr16 2514077 2514077 1 + G A CESC 2514057 + 2514037 2514077 41 CAGCGGTGGCGGAACAGCCACCAAGACCATGTCCTGTGGGG CAGCGGTGGCGGAACAGCCACCAAGACCATGTCCTGTGGGA < 41bp 1 0.220695551199733 1 0.346855729818344 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2514057 chr16:2514077 synonymous SNV . 0 41 hm5C_associated_SNPs_19008 0 0 0 0 1 C16orf59 chr16:2514040 3'AG 2514040 Downstream 38bp
chr17 28754474 28754474 1 + G C CESC 28754477 + 28754457 28754497 41 TGAACCGAAATTTCCCAGACCAGTTTGTTCAGATCACAGAT TGAACCGAAATTTCCCACACCAGTTTGTTCAGATCACAGAT < 41bp 1 0.108981431040491 1 0.0663243234157562 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28754477 chr17:28754474 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_19009 0 0 0 0 1 CPD chr17:28754409 3'AG 28754409 Downstream 66bp
chr19 13049556 13049556 1 + C G CESC 13049544 + 13049524 13049564 41 CTCCTCGGCCTGGCCGTCGCCGAGCCTGCCGTCTACTTCAA CTCCTCGGCCTGGCCGTCGCCGAGCCTGCCGTGTACTTCAA < 41bp 1 0.651205652616771 1 0.738030731678009 experiment 0.697588694766458 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13049544 chr19:13049556 synonymous SNV . 0 33 hm5C_associated_SNPs_19010 0 0 1 0 1 CALR chr19:13049584 5'GT 13049584 Upstream 29bp
chr19 13049556 13049556 1 + C G CESC 13049553 + 13049533 13049573 41 CTGGCCGTCGCCGAGCCTGCCGTCTACTTCAAGGAGCAGTT CTGGCCGTCGCCGAGCCTGCCGTGTACTTCAAGGAGCAGTT < 41bp 1 0.400011383584616 1 0.110072493553162 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13049553 chr19:13049556 synonymous SNV . 0 24 hm5C_associated_SNPs_19011 0 0 1 0 1 CALR chr19:13049584 5'GT 13049584 Upstream 29bp
chr9 130164919 130164919 1 + G A CESC 130164924 + 130164904 130164944 41 ATGTGCTTCATGCCCGAGACCCCGCGCTTCCTGCTGACTCA ATGTGCTTCATGCCCAAGACCCCGCGCTTCCTGCTGACTCA < 41bp 1 0.279610699956999 1 0.0545880496501923 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A8 ENSG00000136856 CDS Human protein_coding chr9:130164924 chr9:130164919 nonsynonymous SNV 0.998 3 16 hm5C_associated_SNPs_19012 0 0 1 0 1 SLC2A8 chr9:130164836 3'AG 130164836 Downstream 84bp
chr12 6941065 6941065 1 + G C CESC 6941063 + 6941043 6941083 41 GCCATGGAGCACCTGGGGACCAGCTTCAAGGATCCTGTGAG GCCATGGAGCACCTGGGGACCACCTTCAAGGATCCTGTGAG < 41bp 1 0.326552832062347 1 0.311273515224457 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control P3H3 ENSG00000110811 CDS Human protein_coding chr12:6941063 chr12:6941065 nonsynonymous SNV 0.312 0 23 hm5C_associated_SNPs_19013 0 0 1 0 2 P3H3 chr12:6940989 3'AG 6940989 Downstream 77bp
chr12 6941065 6941065 1 + G C CESC 6941063 + 6941043 6941083 41 GCCATGGAGCACCTGGGGACCAGCTTCAAGGATCCTGTGAG GCCATGGAGCACCTGGGGACCACCTTCAAGGATCCTGTGAG < 41bp 1 0.326552832062347 1 0.311273515224457 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control P3H3 ENSG00000110811 CDS Human protein_coding chr12:6941063 chr12:6941065 nonsynonymous SNV 0.312 0 23 hm5C_associated_SNPs_19013 0 0 1 0 2 P3H3 chr12:6941078 5'GT 6941078 Upstream 14bp
chr9 137706730 137706730 1 + G A CESC 137706719 + 137706699 137706739 41 ACCCCCTGGACCCAAAGGCCCTCCCGGAGATGATGGTCCCA ACCCCCTGGACCCAAAGGCCCTCCCGGAGATAATGGTCCCA < 41bp 1 0.107140598072907 1 0.079817146062851 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137706719 chr9:137706730 nonsynonymous SNV 0.398 4 32 hm5C_associated_SNPs_19014 0 0 0 0 2 COL5A1 chr9:137706643 3'AG 137706643 Downstream 88bp
chr9 137706730 137706730 1 + G A CESC 137706719 + 137706699 137706739 41 ACCCCCTGGACCCAAAGGCCCTCCCGGAGATGATGGTCCCA ACCCCCTGGACCCAAAGGCCCTCCCGGAGATAATGGTCCCA < 41bp 1 0.107140598072907 1 0.079817146062851 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137706719 chr9:137706730 nonsynonymous SNV 0.398 4 32 hm5C_associated_SNPs_19014 0 0 0 0 2 COL5A1 chr9:137706750 5'GT 137706750 Upstream 21bp
chr19 14580219 14580219 1 + C G CESC 14580202 + 14580182 14580222 41 CAGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTC CAGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTGTTC < 41bp 1 0.0444328466450515 1 0.0737427175045013 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580202 chr19:14580219 synonymous SNV . 0 38 hm5C_associated_SNPs_19015 0 0 1 0 1 PKN1 chr19:14580153 3'AG 14580153 Downstream 67bp
chr19 14580219 14580219 1 + C G CESC 14580203 + 14580183 14580223 41 AGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCG AGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTGTTCG < 41bp 1 0.0201524676105961 1 0.117114126682281 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580203 chr19:14580219 synonymous SNV . 0 37 hm5C_associated_SNPs_19016 0 0 1 0 1 PKN1 chr19:14580153 3'AG 14580153 Downstream 67bp
chr19 14580219 14580219 1 + C G CESC 14580207 + 14580187 14580227 41 ACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCGGCTG ACCAGTGCGGGACACCCCTTCCTGGTGAACCTGTTCGGCTG < 41bp 1 0.421443428254539 1 0.745142221450806 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580207 chr19:14580219 synonymous SNV . 0 33 hm5C_associated_SNPs_19017 0 0 1 0 1 PKN1 chr19:14580153 3'AG 14580153 Downstream 67bp
chrX 57405196 57405196 1 + C A CESC 57405181 + 57405161 57405201 41 CGTTATGCTGAAGACCTGGCCCCCATGTTGAAGGTCATGGC CGTTATGCTGAAGACCTGGCCCCCATGTTGAAGGTAATGGC < 41bp 1 0.474676463233406 1 0.150585651397705 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57405181 chrX:57405196 synonymous SNV . 0 36 hm5C_associated_SNPs_19018 0 0 0 0 1 FAAH2 chrX:57405219 5'GT 57405219 Upstream 24bp
chr9 7174651 7174651 1 + G A CESC 7174666 + 7174646 7174686 41 TTTAAGAATGAATATGTGGCCGACCCTGTATACCGCACTTT TTTAAAAATGAATATGTGGCCGACCCTGTATACCGCACTTT < 41bp 1 0.125382506180739 1 0.0372592508792877 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM4C ENSG00000107077 CDS Human protein_coding chr9:7174666 chr9:7174651 synonymous SNV . 0 6 hm5C_associated_SNPs_19020 0 0 0 0 1 KDM4C chr9:7174553 3'AG 7174553 Downstream 99bp
chr19 36227608 36227608 1 + G A CESC 36227620 + 36227600 36227640 41 CGAGCTCTGAGGAAGAGCCTCCATCCCCAGATGATAAAGAG CGAGCTCTAAGGAAGAGCCTCCATCCCCAGATGATAAAGAG < 41bp 1 0.00583525844337153 1 0.0968704223632812 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36227620 chr19:36227608 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_19024 0 0 1 0 1 KMT2B chr19:36227591 3'AG 36227591 Downstream 18bp
chr2 160031609 160031609 1 + G A CESC 160031614 + 160031594 160031634 41 AGCCCCAACTACAGAGCATGCTGAGCCTCCGATCCTGTGTG AGCCCCAACTACAGAACATGCTGAGCCTCCGATCCTGTGTG < 41bp 1 0.496790031674688 1 0.208282828330994 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160031614 chr2:160031609 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_19025 0 0 0 0 1 TANC1 chr2:160031695 5'GT 160031695 Upstream 87bp
chr16 29811297 29811297 1 + G A CESC 29811295 + 29811275 29811315 41 CCACCAGAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGGA CCACCAGAGGCAAAGAGAGCCCAAGGCCCTGAGGAAGAGGA < 41bp 1 0.128091912854324 1 0.589030623435974 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811295 chr16:29811297 nonsynonymous SNV 0.953 0 23 hm5C_associated_SNPs_19026 0 0 1 0 2 KIF22 chr16:29811234 3'AG 29811234 Downstream 64bp
chr16 29811297 29811297 1 + G A CESC 29811295 + 29811275 29811315 41 CCACCAGAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGGA CCACCAGAGGCAAAGAGAGCCCAAGGCCCTGAGGAAGAGGA < 41bp 1 0.128091912854324 1 0.589030623435974 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811295 chr16:29811297 nonsynonymous SNV 0.953 0 23 hm5C_associated_SNPs_19026 0 0 1 0 2 KIF22 chr16:29811369 5'GT 29811369 Upstream 73bp
chr16 29811297 29811297 1 + G A CESC 29811301 + 29811281 29811321 41 GAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGGAGATCGG GAGGCAAAGAGAGCCCAAGGCCCTGAGGAAGAGGAGATCGG < 41bp 1 0.161859056337637 1 0.130485534667969 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811301 chr16:29811297 nonsynonymous SNV 0.953 0 17 hm5C_associated_SNPs_19027 0 0 1 0 2 KIF22 chr16:29811234 3'AG 29811234 Downstream 64bp
chr16 29811297 29811297 1 + G A CESC 29811301 + 29811281 29811321 41 GAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGGAGATCGG GAGGCAAAGAGAGCCCAAGGCCCTGAGGAAGAGGAGATCGG < 41bp 1 0.161859056337637 1 0.130485534667969 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811301 chr16:29811297 nonsynonymous SNV 0.953 0 17 hm5C_associated_SNPs_19027 0 0 1 0 2 KIF22 chr16:29811369 5'GT 29811369 Upstream 73bp
chr15 91456130 91456130 1 + C T CESC 91456118 + 91456098 91456138 41 TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCCCGTGCTGCG TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCCTGTGCTGCG < 41bp 1 0.646862779985419 1 0.886131763458252 experiment 0.706274440029163 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91456118 chr15:91456130 synonymous SNV . 0 33 hm5C_associated_SNPs_19028 0 0 1 1 2 MAN2A2 chr15:91456107 3'AG 91456107 Downstream 24bp
chr15 91456130 91456130 1 + C T CESC 91456118 + 91456098 91456138 41 TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCCCGTGCTGCG TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCCTGTGCTGCG < 41bp 1 0.646862779985419 1 0.886131763458252 experiment 0.706274440029163 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91456118 chr15:91456130 synonymous SNV . 0 33 hm5C_associated_SNPs_19028 0 0 1 1 2 MAN2A2 chr15:91456221 5'GT 91456221 Upstream 92bp
chr9 6498126 6498126 1 + G C CESC 6498113 + 6498093 6498133 41 GTTGAACCTGCTCCTTGGACCTCTGAAGGAATAGAACGGTC GTTGAACCTGCTCCTTGGACCTCTGAAGGAATACAACGGTC < 41bp 1 0.40763841933586 1 0.144914120435715 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UHRF2 ENSG00000147854 CDS Human protein_coding chr9:6498113 chr9:6498126 nonsynonymous SNV 0.998 2 34 hm5C_associated_SNPs_19029 0 0 1 0 1 UHRF2 chr9:6498158 5'GT 6498158 Upstream 33bp
chr9 6498126 6498126 1 + G C CESC 6498115 + 6498095 6498135 41 TGAACCTGCTCCTTGGACCTCTGAAGGAATAGAACGGTCAA TGAACCTGCTCCTTGGACCTCTGAAGGAATACAACGGTCAA < 41bp 1 0.718510890369223 1 0.766703367233276 experiment 0.562978219261555 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UHRF2 ENSG00000147854 CDS Human protein_coding chr9:6498115 chr9:6498126 nonsynonymous SNV 0.998 2 32 hm5C_associated_SNPs_19030 0 0 1 0 1 UHRF2 chr9:6498158 5'GT 6498158 Upstream 33bp
chr1 214503534 214503534 1 + C A CHOL 214503545 + 214503525 214503565 41 TATTGATCTCCTGTACCCAACGGAAGATAGAAATGACCGGT TATTGATCTACTGTACCCAACGGAAGATAGAAATGACCGGT < 41bp 1 0.618147523133954 1 0.630851745605469 experiment 0.763704953732092 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214503545 chr1:214503534 synonymous SNV . 0 10 hm5C_associated_SNPs_19032 0 0 1 0 2 SMYD2 chr1:214503511 3'AG 214503511 Downstream 24bp
chr1 214503534 214503534 1 + C A CHOL 214503545 + 214503525 214503565 41 TATTGATCTCCTGTACCCAACGGAAGATAGAAATGACCGGT TATTGATCTACTGTACCCAACGGAAGATAGAAATGACCGGT < 41bp 1 0.618147523133954 1 0.630851745605469 experiment 0.763704953732092 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214503545 chr1:214503534 synonymous SNV . 0 10 hm5C_associated_SNPs_19032 0 0 1 0 2 SMYD2 chr1:214503621 5'GT 214503621 Upstream 88bp
chr3 184039802 184039802 1 + A T CHOL 184039793 + 184039773 184039813 41 AGCAGGAGAAGCAGGAGAAGCTGAGAGTGAGAAAGGAGGAG AGCAGGAGAAGCAGGAGAAGCTGAGAGTGTGAAAGGAGGAG < 41bp 1 0.506075922816277 1 0.388317376375198 experiment 0.987848154367445 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184039793 chr3:184039802 nonsynonymous SNV 0.998 1 30 hm5C_associated_SNPs_19033 0 0 1 0 1 EIF4G1 chr3:184039891 5'GT 184039891 Upstream 90bp
chr17 73738739 73738739 1 + G C CHOL 73738719 + 73738699 73738739 41 AGCTGGTGGACGTACGGGTGCCCCTCTTTATCCGGCCTGAG AGCTGGTGGACGTACGGGTGCCCCTCTTTATCCGGCCTGAC < 41bp 1 0.125454918081622 1 0.0190183818340302 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73738719 chr17:73738739 nonsynonymous SNV 0.965 1 41 hm5C_associated_SNPs_19034 0 0 0 0 1 ITGB4 chr17:73738663 3'AG 73738663 Downstream 77bp
chr5 147498034 147498034 1 + A T CHOL 147498044 + 147498024 147498064 41 CAAATGAAAAATGGAAGACTCAGCTGTACTCGGGAGAGTGA CAAATGAAAATTGGAAGACTCAGCTGTACTCGGGAGAGTGA < 41bp 1 0.420332559344689 1 0.319054901599884 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147498044 chr5:147498034 nonsynonymous SNV 0.908 1 11 hm5C_associated_SNPs_19035 0 0 0 0 2 SPINK5 chr5:147498000 3'AG 147498000 Downstream 35bp
chr5 147498034 147498034 1 + A T CHOL 147498044 + 147498024 147498064 41 CAAATGAAAAATGGAAGACTCAGCTGTACTCGGGAGAGTGA CAAATGAAAATTGGAAGACTCAGCTGTACTCGGGAGAGTGA < 41bp 1 0.420332559344689 1 0.319054901599884 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147498044 chr5:147498034 nonsynonymous SNV 0.908 1 11 hm5C_associated_SNPs_19035 0 0 0 0 2 SPINK5 chr5:147498127 5'GT 147498127 Upstream 94bp
chr11 111933226 111933226 1 + G A CHOL 111933230 + 111933210 111933250 41 TTGCTGAGTTTAGAAAGTACCTTGAAAAACCTATCACTATG TTGCTGAGTTTAGAAAATACCTTGAAAAACCTATCACTATG < 41bp 1 0.65230600874497 1 0.334891527891159 experiment 0.695387982510061 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DLAT ENSG00000150768 CDS Human protein_coding chr11:111933230 chr11:111933226 synonymous SNV . 0 17 hm5C_associated_SNPs_19036 0 0 0 0 1 DLAT chr11:111933130 3'AG 111933130 Downstream 97bp
chr19 12014751 12014751 1 + T C CHOL 12014742 + 12014722 12014762 41 AAAAGTTGGAAAGACCAGAACATTGAATATGAGTACCAAAA AAAAGTTGGAAAGACCAGAACATTGAATACGAGTACCAAAA < 41bp 1 0.118955717365832 1 0.355690985918045 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF69 ENSG00000198429 CDS Human protein_coding chr19:12014742 chr19:12014751 synonymous SNV . 0 30 hm5C_associated_SNPs_19037 0 0 0 0 2 ZNF69 chr19:12014720 3'AG 12014720 Downstream 32bp
chr19 12014751 12014751 1 + T C CHOL 12014742 + 12014722 12014762 41 AAAAGTTGGAAAGACCAGAACATTGAATATGAGTACCAAAA AAAAGTTGGAAAGACCAGAACATTGAATACGAGTACCAAAA < 41bp 1 0.118955717365832 1 0.355690985918045 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF69 ENSG00000198429 CDS Human protein_coding chr19:12014742 chr19:12014751 synonymous SNV . 0 30 hm5C_associated_SNPs_19037 0 0 0 0 2 ZNF69 chr19:12014780 5'GT 12014780 Upstream 30bp
chr16 23578342 23578342 1 + A C CHOL 23578358 + 23578338 23578378 41 TAAAAAATGTGGTCAGTGAACCTATCGAAGGACATGAAGAC TAAACAATGTGGTCAGTGAACCTATCGAAGGACATGAAGAC < 41bp 1 0.0628918076735347 1 0.0790891051292419 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBFD1 ENSG00000103353 CDS Human protein_coding chr16:23578358 chr16:23578342 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_19038 0 0 1 0 2 UBFD1 chr16:23578308 3'AG 23578308 Downstream 35bp
chr16 23578342 23578342 1 + A C CHOL 23578358 + 23578338 23578378 41 TAAAAAATGTGGTCAGTGAACCTATCGAAGGACATGAAGAC TAAACAATGTGGTCAGTGAACCTATCGAAGGACATGAAGAC < 41bp 1 0.0628918076735347 1 0.0790891051292419 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBFD1 ENSG00000103353 CDS Human protein_coding chr16:23578358 chr16:23578342 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_19038 0 0 1 0 2 UBFD1 chr16:23578390 5'GT 23578390 Upstream 49bp
chr1 40724003 40724003 1 + C T CHOL 40724018 + 40723998 40724038 41 ATCTTCGGGGCCGTGCTGCTCTTTTCCTGGACAGTGTATCT ATCTTTGGGGCCGTGCTGCTCTTTTCCTGGACAGTGTATCT < 41bp 1 0.217211482818211 1 0.0241536200046539 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMPSTE24 ENSG00000084073 CDS Human protein_coding chr1:40724018 chr1:40724003 synonymous SNV . 0 6 hm5C_associated_SNPs_19039 0 0 1 0 1 ZMPSTE24 chr1:40724066 5'GT 40724066 Upstream 64bp
chr19 10941703 10941703 1 + G A CHOL 10941683 + 10941663 10941703 41 CCCTGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCG CCCTGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCA < 41bp 1 0.0606413730427595 1 0.0314130187034607 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941683 chr19:10941703 nonsynonymous SNV 0.999 4 41 hm5C_associated_SNPs_19040 0 0 1 0 2 DNM2 chr19:10941654 3'AG 10941654 Downstream 50bp
chr19 10941703 10941703 1 + G A CHOL 10941683 + 10941663 10941703 41 CCCTGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCG CCCTGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCA < 41bp 1 0.0606413730427595 1 0.0314130187034607 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941683 chr19:10941703 nonsynonymous SNV 0.999 4 41 hm5C_associated_SNPs_19040 0 0 1 0 2 DNM2 chr19:10941657 3'AG 10941657 Downstream 47bp
chr19 10941703 10941703 1 + G A CHOL 10941684 + 10941664 10941704 41 CCTGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGA CCTGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCAA < 41bp 1 0.73308948434138 1 0.248834162950516 experiment 0.53382103131724 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941684 chr19:10941703 nonsynonymous SNV 0.999 4 40 hm5C_associated_SNPs_19041 0 0 1 0 2 DNM2 chr19:10941654 3'AG 10941654 Downstream 50bp
chr19 10941703 10941703 1 + G A CHOL 10941684 + 10941664 10941704 41 CCTGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGA CCTGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCAA < 41bp 1 0.73308948434138 1 0.248834162950516 experiment 0.53382103131724 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941684 chr19:10941703 nonsynonymous SNV 0.999 4 40 hm5C_associated_SNPs_19041 0 0 1 0 2 DNM2 chr19:10941657 3'AG 10941657 Downstream 47bp
chr19 10941703 10941703 1 + G A CHOL 10941686 + 10941666 10941706 41 TGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGC TGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCAAGC < 41bp 1 0.0573751079466254 1 0.0730002820491791 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941686 chr19:10941703 nonsynonymous SNV 0.999 4 38 hm5C_associated_SNPs_19042 0 0 1 0 2 DNM2 chr19:10941654 3'AG 10941654 Downstream 50bp
chr19 10941703 10941703 1 + G A CHOL 10941686 + 10941666 10941706 41 TGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGC TGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCAAGC < 41bp 1 0.0573751079466254 1 0.0730002820491791 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941686 chr19:10941703 nonsynonymous SNV 0.999 4 38 hm5C_associated_SNPs_19042 0 0 1 0 2 DNM2 chr19:10941657 3'AG 10941657 Downstream 47bp
chr19 10941703 10941703 1 + G A CHOL 10941687 + 10941667 10941707 41 GCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGCC GCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCAAGCC < 41bp 1 0.234459438575317 1 0.103074252605438 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941687 chr19:10941703 nonsynonymous SNV 0.999 4 37 hm5C_associated_SNPs_19043 0 0 1 0 2 DNM2 chr19:10941654 3'AG 10941654 Downstream 50bp
chr19 10941703 10941703 1 + G A CHOL 10941687 + 10941667 10941707 41 GCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGCC GCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCAAGCC < 41bp 1 0.234459438575317 1 0.103074252605438 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941687 chr19:10941703 nonsynonymous SNV 0.999 4 37 hm5C_associated_SNPs_19043 0 0 1 0 2 DNM2 chr19:10941657 3'AG 10941657 Downstream 47bp
chr19 33581730 33581730 1 + G T CHOL 33581723 + 33581703 33581743 41 TTTGTGTCTTCACGACAGAACAGAGCAGACAAATCTGTTCT TTTGTGTCTTCACGACAGAACAGAGCATACAAATCTGTTCT < 41bp 1 0.375899738186441 1 0.49689045548439 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33581723 chr19:33581730 nonsynonymous SNV 0.999 4 28 hm5C_associated_SNPs_19046 0 0 1 0 2 GPATCH1 chr19:33581686 3'AG 33581686 Downstream 45bp
chr19 33581730 33581730 1 + G T CHOL 33581723 + 33581703 33581743 41 TTTGTGTCTTCACGACAGAACAGAGCAGACAAATCTGTTCT TTTGTGTCTTCACGACAGAACAGAGCATACAAATCTGTTCT < 41bp 1 0.375899738186441 1 0.49689045548439 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33581723 chr19:33581730 nonsynonymous SNV 0.999 4 28 hm5C_associated_SNPs_19046 0 0 1 0 2 GPATCH1 chr19:33581771 5'GT 33581771 Upstream 42bp
chrX 70516449 70516449 1 + C T CHOL 70516440 + 70516420 70516460 41 CTCGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT CTCGTCCTGTGACTGTGGAGCCCATGGACTAGTTAGATGAT < 41bp 1 0.0873231655848774 1 0.066047340631485 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516440 chrX:70516449 stopgain 1.000 1 30 hm5C_associated_SNPs_19047 0 0 1 0 2 NONO chrX:70516415 3'AG 70516415 Downstream 35bp
chrX 70516449 70516449 1 + C T CHOL 70516440 + 70516420 70516460 41 CTCGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT CTCGTCCTGTGACTGTGGAGCCCATGGACTAGTTAGATGAT < 41bp 1 0.0873231655848774 1 0.066047340631485 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516440 chrX:70516449 stopgain 1.000 1 30 hm5C_associated_SNPs_19047 0 0 1 0 2 NONO chrX:70516510 5'GT 70516510 Upstream 62bp
chr1 11897068 11897068 1 + C G CHOL 11897086 + 11897066 11897106 41 TCCTCACCCGGGCTGGCGAGCAGCGCAAACGGAGCCAGTCC TCGTCACCCGGGCTGGCGAGCAGCGCAAACGGAGCCAGTCC < 41bp 1 0.701865123601192 1 0.846120238304138 experiment 0.596269752797616 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11897086 chr1:11897068 nonsynonymous SNV 0.980 1 3 hm5C_associated_SNPs_19048 0 0 1 0 1 CLCN6 chr1:11897056 3'AG 11897056 Downstream 13bp
chr2 32613960 32613960 1 + T C CHOL 32613943 + 32613923 32613963 41 GTGGCGTCCTCAGTGATGGACAGATTGTCTTACCTCTTACC GTGGCGTCCTCAGTGATGGACAGATTGTCTTACCTCTCACC < 41bp 1 0.122480895156573 1 0.774440944194794 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32613943 chr2:32613960 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_19050 0 0 1 0 1 BIRC6 chr2:32614011 5'GT 32614011 Upstream 52bp
chr19 45162133 45162133 1 + G T CHOL 45162132 + 45162112 45162152 41 TCTATTGGTCCAAATGTTCCCGTGAGGTCCTTTGGCACTGT TCTATTGGTCCAAATGTTCCCTTGAGGTCCTTTGGCACTGT < 41bp 1 0.600295259420434 1 0.295389711856842 experiment 0.799409481159131 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45162132 chr19:45162133 nonsynonymous SNV 0.005 2 22 hm5C_associated_SNPs_19051 0 0 1 0 1 PVR chr19:45162168 5'GT 45162168 Upstream 36bp
chr19 45162133 45162133 1 + G T CHOL 45162140 + 45162120 45162160 41 TCCAAATGTTCCCGTGAGGTCCTTTGGCACTGTCATCTGTG TCCAAATGTTCCCTTGAGGTCCTTTGGCACTGTCATCTGTG < 41bp 1 0.0211693660725368 1 0.0224297642707825 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45162140 chr19:45162133 nonsynonymous SNV 0.005 2 14 hm5C_associated_SNPs_19052 0 0 1 0 1 PVR chr19:45162168 5'GT 45162168 Upstream 36bp
chr8 145535402 145535402 1 + A G CHOL 145535406 + 145535386 145535426 41 GCCCCCTCCCCAGCCTACAGCAGCTCCAGCCTCTACGCCCC GCCCCCTCCCCAGCCTGCAGCAGCTCCAGCCTCTACGCCCC < 41bp 1 0.321995630254099 1 0.219299614429474 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSF1 ENSG00000185122 CDS Human protein_coding chr8:145535406 chr8:145535402 nonsynonymous SNV 0.993 2 17 hm5C_associated_SNPs_19053 0 0 1 0 1 HSF1 chr8:145535386 3'AG 145535386 Downstream 17bp
chr12 31242081 31242081 1 + G A CHOL 31242078 + 31242058 31242098 41 TCGGCTGGTCTCCCTTGGCTCCCGGCAGGTAAACAGTAGCC TCGGCTGGTCTCCCTTGGCTCCCAGCAGGTAAACAGTAGCC < 41bp 1 0.29517479364466 1 0.110836625099182 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31242078 chr12:31242081 nonsynonymous SNV 0.439 3 24 hm5C_associated_SNPs_19054 1 0 1 0 1 DDX11 chr12:31242085 5'GT 31242085 Upstream 5bp
chr12 31242073 31242073 1 + T C CHOL 31242078 + 31242058 31242098 41 TCGGCTGGTCTCCCTTGGCTCCCGGCAGGTAAACAGTAGCC TCGGCTGGTCTCCCTCGGCTCCCGGCAGGTAAACAGTAGCC < 41bp 1 0.466460313823319 1 0.198191732168198 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31242078 chr12:31242073 synonymous SNV . 0 16 hm5C_associated_SNPs_19055 0 0 1 0 1 DDX11 chr12:31242085 5'GT 31242085 Upstream 13bp
chr7 150704218 150704218 1 + G A CHOL 150704202 + 150704182 150704222 41 CACCCCAGGTTCTGTGTGTTCGGGCTCGGCTCCCGGGCATA CACCCCAGGTTCTGTGTGTTCGGGCTCGGCTCCCGGACATA < 41bp 1 0.743608097843208 1 0.927751243114471 experiment 0.512783804313585 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control NOS3 ENSG00000164867 CDS Human protein_coding chr7:150704202 chr7:150704218 nonsynonymous SNV 0.930 2 37 hm5C_associated_SNPs_19056 0 0 0 0 1 NOS3 chr7:150704190 3'AG 150704190 Downstream 29bp
chr19 11141508 11141508 1 + G T CHOL 11141506 + 11141486 11141526 41 AGCACCCGGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGGC AGCACCCGGGCTGGGGGGCTCGTCCTGAACCTCCAGTCGGC < 41bp 1 0.198529373958849 1 0.342818677425385 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141506 chr19:11141508 nonsynonymous SNV 0.955 5 23 hm5C_associated_SNPs_19057 0 0 1 0 1 SMARCA4 chr19:11141569 5'GT 11141569 Upstream 62bp
chr2 128861520 128861520 1 + A C CHOL 128861524 + 128861504 128861544 41 AGTGAGTTTTTAGCAGAAGACAGTCAAGAGAAATTTTGGAA AGTGAGTTTTTAGCAGCAGACAGTCAAGAGAAATTTTGGAA < 41bp 1 0.0644234461250075 1 0.226362317800522 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128861524 chr2:128861520 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_19058 0 0 1 0 2 UGGT1 chr2:128861506 3'AG 128861506 Downstream 15bp
chr2 128861520 128861520 1 + A C CHOL 128861524 + 128861504 128861544 41 AGTGAGTTTTTAGCAGAAGACAGTCAAGAGAAATTTTGGAA AGTGAGTTTTTAGCAGCAGACAGTCAAGAGAAATTTTGGAA < 41bp 1 0.0644234461250075 1 0.226362317800522 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128861524 chr2:128861520 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_19058 0 0 1 0 2 UGGT1 chr2:128861588 5'GT 128861588 Upstream 69bp
chr1 161130441 161130441 1 + C T CHOL 161130429 + 161130409 161130449 41 GGTCCAGCCTGTGGTGTCCACAATGCCCCAGGCCTCTGAGC GGTCCAGCCTGTGGTGTCCACAATGCCCCAGGTCTCTGAGC < 41bp 1 0.670737192576784 1 0.481158852577209 experiment 0.658525614846432 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161130429 chr1:161130441 nonsynonymous SNV 0.998 1 33 hm5C_associated_SNPs_19059 0 0 1 0 1 USP21 chr1:161130410 3'AG 161130410 Downstream 32bp
chr19 49593594 49593594 1 + A G COAD 49593585 + 49593565 49593605 41 TCCTCCAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGA TCCTCCAACTCGTGCTGAAACCCGAGAGGGGCGCATGGAGA < 41bp 1 0.711300700631267 1 0.368705630302429 experiment 0.577398598737465 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593585 chr19:49593594 nonsynonymous SNV 0.998 4 30 hm5C_associated_SNPs_19060 0 0 1 0 2 SNRNP70 chr19:49593548 3'AG 49593548 Downstream 47bp
chr19 49593594 49593594 1 + A G COAD 49593585 + 49593565 49593605 41 TCCTCCAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGA TCCTCCAACTCGTGCTGAAACCCGAGAGGGGCGCATGGAGA < 41bp 1 0.711300700631267 1 0.368705630302429 experiment 0.577398598737465 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593585 chr19:49593594 nonsynonymous SNV 0.998 4 30 hm5C_associated_SNPs_19060 0 0 1 0 2 SNRNP70 chr19:49593610 5'GT 49593610 Upstream 17bp
chr19 49593594 49593594 1 + A G COAD 49593586 + 49593566 49593606 41 CCTCCAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGAG CCTCCAACTCGTGCTGAAACCCGAGAGGGGCGCATGGAGAG < 41bp 1 0.517676634482095 1 0.760877728462219 experiment 0.96464673103581 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593586 chr19:49593594 nonsynonymous SNV 0.998 4 29 hm5C_associated_SNPs_19061 0 0 1 0 2 SNRNP70 chr19:49593548 3'AG 49593548 Downstream 47bp
chr19 49593594 49593594 1 + A G COAD 49593586 + 49593566 49593606 41 CCTCCAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGAG CCTCCAACTCGTGCTGAAACCCGAGAGGGGCGCATGGAGAG < 41bp 1 0.517676634482095 1 0.760877728462219 experiment 0.96464673103581 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593586 chr19:49593594 nonsynonymous SNV 0.998 4 29 hm5C_associated_SNPs_19061 0 0 1 0 2 SNRNP70 chr19:49593610 5'GT 49593610 Upstream 17bp
chr19 49593594 49593594 1 + A G COAD 49593596 + 49593576 49593616 41 GTGCTGAAACCCGAGAGGAGCGCATGGAGAGGAAAGTATGT GTGCTGAAACCCGAGAGGGGCGCATGGAGAGGAAAGTATGT < 41bp 1 0.177451414339677 1 0.364840388298035 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593596 chr19:49593594 nonsynonymous SNV 0.998 4 19 hm5C_associated_SNPs_19062 0 0 1 0 2 SNRNP70 chr19:49593548 3'AG 49593548 Downstream 47bp
chr19 49593594 49593594 1 + A G COAD 49593596 + 49593576 49593616 41 GTGCTGAAACCCGAGAGGAGCGCATGGAGAGGAAAGTATGT GTGCTGAAACCCGAGAGGGGCGCATGGAGAGGAAAGTATGT < 41bp 1 0.177451414339677 1 0.364840388298035 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593596 chr19:49593594 nonsynonymous SNV 0.998 4 19 hm5C_associated_SNPs_19062 0 0 1 0 2 SNRNP70 chr19:49593610 5'GT 49593610 Upstream 17bp
chr19 49593594 49593594 1 + A G COAD 49593598 + 49593578 49593618 41 GCTGAAACCCGAGAGGAGCGCATGGAGAGGAAAGTATGTCA GCTGAAACCCGAGAGGGGCGCATGGAGAGGAAAGTATGTCA < 41bp 1 0.476391077111799 1 0.328505098819733 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593598 chr19:49593594 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_19063 0 0 1 0 2 SNRNP70 chr19:49593548 3'AG 49593548 Downstream 47bp
chr19 49593594 49593594 1 + A G COAD 49593598 + 49593578 49593618 41 GCTGAAACCCGAGAGGAGCGCATGGAGAGGAAAGTATGTCA GCTGAAACCCGAGAGGGGCGCATGGAGAGGAAAGTATGTCA < 41bp 1 0.476391077111799 1 0.328505098819733 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593598 chr19:49593594 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_19063 0 0 1 0 2 SNRNP70 chr19:49593610 5'GT 49593610 Upstream 17bp
chr10 43971236 43971236 1 + C A COAD 43971248 + 43971228 43971268 41 GGACTCTGCTCAGAGGACCCCGTACAGAGACATGATGCTGG GGACTCTGATCAGAGGACCCCGTACAGAGACATGATGCTGG < 41bp 1 0.376734469705026 1 0.235965341329575 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF487 ENSG00000243660 CDS Human protein_coding chr10:43971248 chr10:43971236 nonsynonymous SNV . 0 9 hm5C_associated_SNPs_19064 0 0 0 0 2 ZNF487 chr10:43971169 3'AG 43971169 Downstream 68bp
chr10 43971236 43971236 1 + C A COAD 43971248 + 43971228 43971268 41 GGACTCTGCTCAGAGGACCCCGTACAGAGACATGATGCTGG GGACTCTGATCAGAGGACCCCGTACAGAGACATGATGCTGG < 41bp 1 0.376734469705026 1 0.235965341329575 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF487 ENSG00000243660 CDS Human protein_coding chr10:43971248 chr10:43971236 nonsynonymous SNV . 0 9 hm5C_associated_SNPs_19064 0 0 0 0 2 ZNF487 chr10:43971295 5'GT 43971295 Upstream 60bp
chr11 68846030 68846030 1 + G T COAD 68846028 + 68846008 68846048 41 GCCACTACTACTTTGACTACCTGGGGAACCTCATCGCCCTG GCCACTACTACTTTGACTACCTTGGGAACCTCATCGCCCTG < 41bp 1 0.480260768763777 1 0.230260998010635 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68846028 chr11:68846030 synonymous SNV . 0 23 hm5C_associated_SNPs_19068 0 0 1 2 2 TPCN2 chr11:68845950 3'AG 68845950 Downstream 81bp
chr11 68846030 68846030 1 + G T COAD 68846028 + 68846008 68846048 41 GCCACTACTACTTTGACTACCTGGGGAACCTCATCGCCCTG GCCACTACTACTTTGACTACCTTGGGAACCTCATCGCCCTG < 41bp 1 0.480260768763777 1 0.230260998010635 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68846028 chr11:68846030 synonymous SNV . 0 23 hm5C_associated_SNPs_19068 0 0 1 2 2 TPCN2 chr11:68846069 5'GT 68846069 Upstream 40bp
chr2 119732133 119732133 1 + G C COAD 119732128 + 119732108 119732148 41 CCCCAAGGCCCACCGGGAGTCAAGGGAGAGGCGGGTGAGTA CCCCAAGGCCCACCGGGAGTCAAGGCAGAGGCGGGTGAGTA < 41bp 1 0.707941542699513 1 0.683101236820221 experiment 0.584116914600974 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MARCO ENSG00000019169 CDS Human protein_coding chr2:119732128 chr2:119732133 nonsynonymous SNV 0.990 4 26 hm5C_associated_SNPs_19070 0 0 0 0 2 MARCO chr2:119732097 3'AG 119732097 Downstream 37bp
chr2 119732133 119732133 1 + G C COAD 119732128 + 119732108 119732148 41 CCCCAAGGCCCACCGGGAGTCAAGGGAGAGGCGGGTGAGTA CCCCAAGGCCCACCGGGAGTCAAGGCAGAGGCGGGTGAGTA < 41bp 1 0.707941542699513 1 0.683101236820221 experiment 0.584116914600974 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MARCO ENSG00000019169 CDS Human protein_coding chr2:119732128 chr2:119732133 nonsynonymous SNV 0.990 4 26 hm5C_associated_SNPs_19070 0 0 0 0 2 MARCO chr2:119732141 5'GT 119732141 Upstream 9bp
chr3 14905701 14905701 1 + G A COAD 14905692 + 14905672 14905712 41 TCGGCAGCCCCCAAAGAGGACCTTACGTCGGATGAAGAGCA TCGGCAGCCCCCAAAGAGGACCTTACGTCAGATGAAGAGCA < 41bp 1 0.0273392810782934 1 0.0375505089759827 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FGD5 ENSG00000154783 CDS Human protein_coding chr3:14905692 chr3:14905701 synonymous SNV . 0 30 hm5C_associated_SNPs_19071 0 0 0 0 2 FGD5 chr3:14905635 3'AG 14905635 Downstream 67bp
chr3 14905701 14905701 1 + G A COAD 14905692 + 14905672 14905712 41 TCGGCAGCCCCCAAAGAGGACCTTACGTCGGATGAAGAGCA TCGGCAGCCCCCAAAGAGGACCTTACGTCAGATGAAGAGCA < 41bp 1 0.0273392810782934 1 0.0375505089759827 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FGD5 ENSG00000154783 CDS Human protein_coding chr3:14905692 chr3:14905701 synonymous SNV . 0 30 hm5C_associated_SNPs_19071 0 0 0 0 2 FGD5 chr3:14905767 5'GT 14905767 Upstream 67bp
chr19 34292090 34292090 1 + C T COAD 34292109 + 34292089 34292129 41 CCGGCTGTCTCTCACCCGGTCGCCTGTGTCTCCCCTGGCTG CTGGCTGTCTCTCACCCGGTCGCCTGTGTCTCCCCTGGCTG < 41bp 1 0.58129784824804 1 0.0872621834278107 experiment 0.837404303503921 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34292109 chr19:34292090 nonsynonymous SNV 0.998 4 2 hm5C_associated_SNPs_19072 0 0 1 0 1 KCTD15 chr19:34292072 3'AG 34292072 Downstream 19bp
chr1 154248123 154248123 1 + T C COAD 154248129 + 154248109 154248149 41 CCTCCAGCCCTGGATGATGCCTTTTCCATCCTGGACTTATT CCTCCAGCCCTGGACGATGCCTTTTCCATCCTGGACTTATT < 41bp 1 0.0903345405467035 1 0.0425158441066742 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HAX1 ENSG00000143575 CDS Human protein_coding chr1:154248129 chr1:154248123 synonymous SNV . 0 15 hm5C_associated_SNPs_19073 0 0 1 0 1 HAX1 chr1:154248092 3'AG 154248092 Downstream 32bp
chr1 109743447 109743447 1 + C T COAD 109743434 + 109743414 109743454 41 GCCAGCAGCTGACAGCTGCGCCATCATGGAAGGCGAGGATG GCCAGCAGCTGACAGCTGCGCCATCATGGAAGGTGAGGATG < 41bp 1 0.0551154574040082 1 0.10423555970192 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109743434 chr1:109743447 synonymous SNV . 0 34 hm5C_associated_SNPs_19074 0 0 0 0 1 KIAA1324 chr1:109743357 3'AG 109743357 Downstream 91bp
chr8 145139713 145139713 1 + C T COAD 145139712 + 145139692 145139732 41 TACTTGCTCCCCGGCCTCTCCCGCTTCGTCTCCATCGGCCT TACTTGCTCCCCGGCCTCTCCTGCTTCGTCTCCATCGGCCT < 41bp 1 0.511019540257914 1 0.164278149604797 experiment 0.977960919484173 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139712 chr8:145139713 nonsynonymous SNV 0.990 3 22 hm5C_associated_SNPs_19075 0 0 0 0 1 GPAA1 chr8:145139625 3'AG 145139625 Downstream 89bp
chr12 123028753 123028753 1 + T C COAD 123028737 + 123028717 123028757 41 AATCAAGTCCAGTTTTATTTCTACTGAAAATTATCATACTC AATCAAGTCCAGTTTTATTTCTACTGAAAATTATCACACTC < 41bp 1 0.337105426438195 1 0.527902483940125 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123028737 chr12:123028753 synonymous SNV . 0 37 hm5C_associated_SNPs_19076 0 0 1 0 2 KNTC1 chr12:123028706 3'AG 123028706 Downstream 48bp
chr12 123028753 123028753 1 + T C COAD 123028737 + 123028717 123028757 41 AATCAAGTCCAGTTTTATTTCTACTGAAAATTATCATACTC AATCAAGTCCAGTTTTATTTCTACTGAAAATTATCACACTC < 41bp 1 0.337105426438195 1 0.527902483940125 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123028737 chr12:123028753 synonymous SNV . 0 37 hm5C_associated_SNPs_19076 0 0 1 0 2 KNTC1 chr12:123028816 5'GT 123028816 Upstream 64bp
chrX 103411571 103411571 1 + C T COAD 103411562 + 103411542 103411582 41 CCTCCTCGCGGGGTGGGCACCTGCCCGAGCGAGGAGCCGGG CCTCCTCGCGGGGTGGGCACCTGCCCGAGTGAGGAGCCGGG < 41bp 1 0.765153882403755 1 0.0839024186134338 experiment 0.46969223519249 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM199X ENSG00000123575 CDS Human protein_coding chrX:103411562 chrX:103411571 synonymous SNV . 0 30 hm5C_associated_SNPs_19077 0 0 1 0 1 FAM199X chrX:103411663 5'GT 103411663 Upstream 93bp
chr17 57733219 57733219 1 + G A COAD 57733217 + 57733197 57733237 41 TTGATTTTCTTTCTGTAGATCAGTGAAAAGCATGATGTGGT TTGATTTTCTTTCTGTAGATCAATGAAAAGCATGATGTGGT < 41bp 1 0.0476871524344951 1 0.275144845247269 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57733217 chr17:57733219 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_19078 0 0 1 0 1 CLTC chr17:57733215 3'AG 57733215 Downstream 5bp
chr7 142459799 142459799 1 + C T COAD 142459781 + 142459761 142459801 41 CTCTCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCAT CTCTCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACTAT < 41bp 1 0.672292223144994 1 0.779423236846924 experiment 0.655415553710012 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459781 chr7:142459799 synonymous SNV . 0 39 hm5C_associated_SNPs_19079 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 80bp
chr7 142459799 142459799 1 + C T COAD 142459784 + 142459764 142459804 41 TCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTC TCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACTATCTC < 41bp 1 0.553764075511332 1 0.244832932949066 experiment 0.892471848977336 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459784 chr7:142459799 synonymous SNV . 0 36 hm5C_associated_SNPs_19080 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 80bp
chr7 142459799 142459799 1 + C T COAD 142459786 + 142459766 142459806 41 CTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTC CTCACGTGCAGTAATCAACGCCCGCGTGTCCACTATCTCTC < 41bp 1 0.478744795158668 1 0.106430023908615 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459786 chr7:142459799 synonymous SNV . 0 34 hm5C_associated_SNPs_19081 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 80bp
chr7 142459799 142459799 1 + C T COAD 142459787 + 142459767 142459807 41 TCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCT TCACGTGCAGTAATCAACGCCCGCGTGTCCACTATCTCTCT < 41bp 1 0.513074228281448 1 0.136171907186508 experiment 0.973851543437104 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459787 chr7:142459799 synonymous SNV . 0 33 hm5C_associated_SNPs_19082 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 80bp
chr7 142459799 142459799 1 + C T COAD 142459788 + 142459768 142459808 41 CACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCTG CACGTGCAGTAATCAACGCCCGCGTGTCCACTATCTCTCTG < 41bp 1 0.766039048542059 1 0.160543620586395 experiment 0.467921902915883 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459788 chr7:142459799 synonymous SNV . 0 32 hm5C_associated_SNPs_19083 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 80bp
chr7 142459799 142459799 1 + C T COAD 142459790 + 142459770 142459810 41 CGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCC CGTGCAGTAATCAACGCCCGCGTGTCCACTATCTCTCTGCC < 41bp 1 0.399350174873016 1 0.159793674945831 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459790 chr7:142459799 synonymous SNV . 0 30 hm5C_associated_SNPs_19084 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 80bp
chr7 142459799 142459799 1 + C T COAD 142459795 + 142459775 142459815 41 AGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCG AGTAATCAACGCCCGCGTGTCCACTATCTCTCTGCCCACCG < 41bp 1 0.432250132111378 1 0.09854456782341 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459795 chr7:142459799 synonymous SNV . 0 25 hm5C_associated_SNPs_19085 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 80bp
chr7 142459799 142459799 1 + C T COAD 142459796 + 142459776 142459816 41 GTAATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGC GTAATCAACGCCCGCGTGTCCACTATCTCTCTGCCCACCGC < 41bp 1 0.786022418185367 1 0.145454674959183 experiment 0.427955163629265 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459796 chr7:142459799 synonymous SNV . 0 24 hm5C_associated_SNPs_19086 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 80bp
chr7 142459799 142459799 1 + C T COAD 142459798 + 142459778 142459818 41 AATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCC AATCAACGCCCGCGTGTCCACTATCTCTCTGCCCACCGCCC < 41bp 1 0.331545315906767 1 0.0351950228214264 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459798 chr7:142459799 synonymous SNV . 0 22 hm5C_associated_SNPs_19087 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 80bp
chr7 142459799 142459799 1 + C T COAD 142459802 + 142459782 142459822 41 AACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCC AACGCCCGCGTGTCCACTATCTCTCTGCCCACCGCCCCTCC < 41bp 1 0.52317271494587 1 0.24093958735466 experiment 0.953654570108261 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459802 chr7:142459799 synonymous SNV . 0 18 hm5C_associated_SNPs_19088 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 80bp
chr7 142459799 142459799 1 + C T COAD 142459804 + 142459784 142459824 41 CGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAG CGCCCGCGTGTCCACTATCTCTCTGCCCACCGCCCCTCCAG < 41bp 1 0.692924373629363 1 0.282211899757385 experiment 0.614151252741275 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459804 chr7:142459799 synonymous SNV . 0 16 hm5C_associated_SNPs_19089 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 80bp
chr7 142459799 142459799 1 + C T COAD 142459806 + 142459786 142459826 41 CCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCC CCCGCGTGTCCACTATCTCTCTGCCCACCGCCCCTCCAGCC < 41bp 1 0.608846608704581 1 0.370394229888916 experiment 0.782306782590839 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459806 chr7:142459799 synonymous SNV . 0 14 hm5C_associated_SNPs_19090 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 80bp
chr7 142459799 142459799 1 + C T COAD 142459809 + 142459789 142459829 41 GCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACT GCGTGTCCACTATCTCTCTGCCCACCGCCCCTCCAGCCACT < 41bp 1 0.156954897412299 1 0.0361928045749664 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459809 chr7:142459799 synonymous SNV . 0 11 hm5C_associated_SNPs_19091 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 80bp
chr7 142459799 142459799 1 + C T COAD 142459810 + 142459790 142459830 41 CGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTG CGTGTCCACTATCTCTCTGCCCACCGCCCCTCCAGCCACTG < 41bp 1 0.214126250549293 1 0.0385346710681915 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459810 chr7:142459799 synonymous SNV . 0 10 hm5C_associated_SNPs_19092 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 80bp
chr7 142459799 142459799 1 + C T COAD 142459811 + 142459791 142459831 41 GTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGG GTGTCCACTATCTCTCTGCCCACCGCCCCTCCAGCCACTGG < 41bp 1 0.668707221714661 1 0.039907306432724 experiment 0.662585556570678 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459811 chr7:142459799 synonymous SNV . 0 9 hm5C_associated_SNPs_19093 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 80bp
chr7 142459799 142459799 1 + C T COAD 142459813 + 142459793 142459833 41 GTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCA GTCCACTATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCA < 41bp 1 0.274024114297266 1 0.113823771476746 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459813 chr7:142459799 synonymous SNV . 0 7 hm5C_associated_SNPs_19094 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 80bp
chr7 142459799 142459799 1 + C T COAD 142459814 + 142459794 142459834 41 TCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCAC TCCACTATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCAC < 41bp 1 0.50392387796627 1 0.16686424612999 experiment 0.992152244067461 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459814 chr7:142459799 synonymous SNV . 0 6 hm5C_associated_SNPs_19095 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 80bp
chr7 142459799 142459799 1 + C T COAD 142459816 + 142459796 142459836 41 CACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGA CACTATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGA < 41bp 1 0.247704706499695 1 0.191295981407166 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459816 chr7:142459799 synonymous SNV . 0 4 hm5C_associated_SNPs_19096 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 80bp
chr7 142459799 142459799 1 + C T COAD 142459817 + 142459797 142459837 41 ACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAA ACTATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAA < 41bp 1 0.132676528241309 1 0.352782905101776 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459817 chr7:142459799 synonymous SNV . 0 3 hm5C_associated_SNPs_19097 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 80bp
chr7 142459799 142459799 1 + C T COAD 142459818 + 142459798 142459838 41 CCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAG CTATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAG < 41bp 1 0.112091195757316 1 0.309674948453903 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459818 chr7:142459799 synonymous SNV . 0 2 hm5C_associated_SNPs_19098 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 80bp
chr7 142459799 142459799 1 + C T COAD 142459819 + 142459799 142459839 41 CATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGT TATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGT < 41bp 1 0.678981076490912 1 0.935839235782623 experiment 0.642037847018176 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459819 chr7:142459799 synonymous SNV . 0 1 hm5C_associated_SNPs_19099 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 80bp
chrX 107909796 107909796 1 + T C COAD 107909782 + 107909762 107909802 41 GCGAAAAAGGCAAACCCGGTCAAGATGGTATTCCTGGACCA GCGAAAAAGGCAAACCCGGTCAAGATGGTATTCCCGGACCA < 41bp 1 0.762939046876341 1 0.750156998634338 experiment 0.474121906247318 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107909782 chrX:107909796 synonymous SNV . 0 35 hm5C_associated_SNPs_19100 0 0 1 0 2 COL4A5 chrX:107909726 3'AG 107909726 Downstream 71bp
chrX 107909796 107909796 1 + T C COAD 107909782 + 107909762 107909802 41 GCGAAAAAGGCAAACCCGGTCAAGATGGTATTCCTGGACCA GCGAAAAAGGCAAACCCGGTCAAGATGGTATTCCCGGACCA < 41bp 1 0.762939046876341 1 0.750156998634338 experiment 0.474121906247318 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107909782 chrX:107909796 synonymous SNV . 0 35 hm5C_associated_SNPs_19100 0 0 1 0 2 COL4A5 chrX:107909824 5'GT 107909824 Upstream 29bp
chr5 141353245 141353245 1 + T C COAD 141353260 + 141353240 141353280 41 GTCTGTCCAAGGTGGAGAAACCAGGATCTATTTGGATTTGC GTCTGCCCAAGGTGGAGAAACCAGGATCTATTTGGATTTGC < 41bp 1 0.552065913956679 1 0.106529206037521 experiment 0.895868172086642 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF14 ENSG00000013561 CDS Human antisense chr5:141353260 chr5:141353245 nonsynonymous SNV 1.000 0 6 hm5C_associated_SNPs_19101 0 0 1 0 2 RNF14 chr5:141353148 3'AG 141353148 Downstream 98bp
chr5 141353245 141353245 1 + T C COAD 141353260 + 141353240 141353280 41 GTCTGTCCAAGGTGGAGAAACCAGGATCTATTTGGATTTGC GTCTGCCCAAGGTGGAGAAACCAGGATCTATTTGGATTTGC < 41bp 1 0.552065913956679 1 0.106529206037521 experiment 0.895868172086642 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF14 ENSG00000013561 CDS Human protein_coding chr5:141353260 chr5:141353245 nonsynonymous SNV 1.000 0 6 hm5C_associated_SNPs_19101 0 0 1 0 2 RNF14 chr5:141353307 5'GT 141353307 Upstream 63bp
chrX 152037427 152037427 1 + T G COAD 152037426 + 152037406 152037446 41 GCCCCCAAGTACCACATCCCCTACTGGGTGGCCTACTACCT GCCCCCAAGTACCACATCCCCGACTGGGTGGCCTACTACCT < 41bp 1 0.604172212035597 1 0.0284517705440521 experiment 0.791655575928806 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NSDHL ENSG00000147383 CDS Human protein_coding chrX:152037426 chrX:152037427 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_19104 0 0 1 0 1 NSDHL chrX:152037328 3'AG 152037328 Downstream 100bp
chr11 68177405 68177405 1 + C T COAD 68177413 + 68177393 68177433 41 CGCCTTCATGAACGGGAGCTCGGTGGAGCACGTGGTGGAGT CGCCTTCATGAATGGGAGCTCGGTGGAGCACGTGGTGGAGT < 41bp 1 0.448739310552339 1 0.69089812040329 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68177413 chr11:68177405 synonymous SNV . 0 13 hm5C_associated_SNPs_19105 0 0 0 0 1 LRP5 chr11:68177382 3'AG 68177382 Downstream 24bp
chr14 102466397 102466397 1 + C T COAD 102466414 + 102466394 102466434 41 GGACGACAGAGAGAAGTGTGCAAAGGCCAAGGAGGCGCTGG GGATGACAGAGAGAAGTGTGCAAAGGCCAAGGAGGCGCTGG < 41bp 1 0.214779675333768 1 0.578078627586365 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466414 chr14:102466397 synonymous SNV . 0 4 hm5C_associated_SNPs_19106 0 0 1 0 2 DYNC1H1 chr14:102466326 3'AG 102466326 Downstream 72bp
chr14 102466397 102466397 1 + C T COAD 102466414 + 102466394 102466434 41 GGACGACAGAGAGAAGTGTGCAAAGGCCAAGGAGGCGCTGG GGATGACAGAGAGAAGTGTGCAAAGGCCAAGGAGGCGCTGG < 41bp 1 0.214779675333768 1 0.578078627586365 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466414 chr14:102466397 synonymous SNV . 0 4 hm5C_associated_SNPs_19106 0 0 1 0 2 DYNC1H1 chr14:102466481 5'GT 102466481 Upstream 85bp
chr3 183898757 183898757 1 + C T COAD 183898739 + 183898719 183898759 41 ATGAGCTCTTCCTGGATGTGCTGGAGAGTGTGAACCTGCTC ATGAGCTCTTCCTGGATGTGCTGGAGAGTGTGAACCTGTTC < 41bp 1 0.79110136068719 1 0.587756097316742 experiment 0.417797278625621 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183898739 chr3:183898757 nonsynonymous SNV 0.999 4 39 hm5C_associated_SNPs_19108 0 0 1 0 1 AP2M1 chr3:183898772 5'GT 183898772 Upstream 16bp
chr1 225284937 225284937 1 + C T COAD 225284922 + 225284902 225284942 41 TTTATCTTGAACCAGTCTTTCATTCTTCAGAAATACGAAGG TTTATCTTGAACCAGTCTTTCATTCTTCAGAAATATGAAGG < 41bp 1 0.0186216693967212 1 0.0647811889648438 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DNAH14 ENSG00000185842 CDS Human protein_coding chr1:225284922 chr1:225284937 stopgain 0.990 0 36 hm5C_associated_SNPs_19109 0 0 0 0 1 DNAH14 chr1:225284941 5'GT 225284941 Upstream 5bp
chr13 52293442 52293442 1 + G A COAD 52293456 + 52293436 52293476 41 GGCAGCGCCTGGGAGGTTATCGGACCAGTGCTGTGGCCTCA GGCAGCACCTGGGAGGTTATCGGACCAGTGCTGTGGCCTCA < 41bp 1 0.558483630234335 1 0.927771210670471 experiment 0.883032739531329 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDFY2 ENSG00000139668 CDS Human protein_coding chr13:52293456 chr13:52293442 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_19111 0 0 1 0 1 WDFY2 chr13:52293484 5'GT 52293484 Upstream 43bp
chr12 101680190 101680190 1 + C T COAD 101680176 + 101680156 101680196 41 GTTTTTTTTGACTATCACCTCGATCCTGGAGACTCAGGACA GTTTTTTTTGACTATCACCTCGATCCTGGAGACTTAGGACA < 41bp 1 0.0893826561955516 1 0.126728713512421 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101680176 chr12:101680190 stopgain 1.000 0 35 hm5C_associated_SNPs_19112 0 0 1 0 2 UTP20 chr12:101680099 3'AG 101680099 Downstream 92bp
chr12 101680190 101680190 1 + C T COAD 101680176 + 101680156 101680196 41 GTTTTTTTTGACTATCACCTCGATCCTGGAGACTCAGGACA GTTTTTTTTGACTATCACCTCGATCCTGGAGACTTAGGACA < 41bp 1 0.0893826561955516 1 0.126728713512421 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101680176 chr12:101680190 stopgain 1.000 0 35 hm5C_associated_SNPs_19112 0 0 1 0 2 UTP20 chr12:101680287 5'GT 101680287 Upstream 98bp
chr3 33183922 33183922 1 + A T COAD 33183934 + 33183914 33183954 41 CTCTTGGAACTGGAGGAGACCAGCTAGCCCACAGCAACCAA CTCTTGGATCTGGAGGAGACCAGCTAGCCCACAGCAACCAA < 41bp 1 0.440130191132268 1 0.113033831119537 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CRTAP ENSG00000170275 CDS Human protein_coding chr3:33183934 chr3:33183922 nonsynonymous SNV 0.949 0 9 hm5C_associated_SNPs_19113 0 0 1 0 1 CRTAP chr3:33183887 3'AG 33183887 Downstream 36bp
chr3 47456472 47456472 1 - G T COAD 47456479 - 47456459 47456499 41 GGCCTTTTGTCCTCAGGGACCCCAGGGCGGGGCAGTTCCCC GGCCTTTTGTCCTCAGGGACCCCAGGGAGGGGCAGTTCCCC < 41bp 1 0.153864263363168 1 0.111864924430847 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SCAP ENSG00000114650 CDS Human protein_coding chr3:47456479 chr3:47456472 synonymous SNV . 0 28 hm5C_associated_SNPs_19114 0 0 1 0 1 SCAP chr3:47456483 3'AG 47456483 Downstream 12bp
chr2 37475354 37475354 1 + A C COAD 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATATGTTAATGAATCCAACGAAGATGGGAGAGAGA < 41bp 1 0.10888559822759 1 0.325759053230286 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475354 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_19115 0 0 1 3 1 NDUFAF7 chr2:37475278 3'AG 37475278 Downstream 77bp
chr2 37475354 37475354 1 + A C COAD 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATATGTTAATGAATCCAACGAAGATGGGAGAGAGAT < 41bp 1 0.475908014237201 1 0.248678803443909 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475354 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_19116 0 0 1 3 1 NDUFAF7 chr2:37475278 3'AG 37475278 Downstream 77bp
chr3 150289802 150289802 1 + C T COAD 150289790 + 150289770 150289810 41 AGTTTGGAATTCTAGTTCTACTGAGTTTTGTGCTGTATATG AGTTTGGAATTCTAGTTCTACTGAGTTTTGTGTTGTATATG < 41bp 1 0.544080398037776 1 0.17607319355011 experiment 0.911839203924448 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF2A ENSG00000144895 CDS Human protein_coding chr3:150289790 chr3:150289802 nonsynonymous SNV 0.997 0 33 hm5C_associated_SNPs_19120 0 0 1 0 1 EIF2A chr3:150289745 3'AG 150289745 Downstream 58bp
chr1 118499758 118499758 1 + G A COAD 118499775 + 118499755 118499795 41 AACGAATTCATTCAGCTGGGCTCTGATGTTGAACTTATATG AACAAATTCATTCAGCTGGGCTCTGATGTTGAACTTATATG < 41bp 1 0.148695776358549 1 0.0592679679393768 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR3 ENSG00000065183 CDS Human protein_coding chr1:118499775 chr1:118499758 nonsynonymous SNV 0.721 0 4 hm5C_associated_SNPs_19126 0 0 1 0 2 WDR3 chr1:118499691 3'AG 118499691 Downstream 68bp
chr1 118499758 118499758 1 + G A COAD 118499775 + 118499755 118499795 41 AACGAATTCATTCAGCTGGGCTCTGATGTTGAACTTATATG AACAAATTCATTCAGCTGGGCTCTGATGTTGAACTTATATG < 41bp 1 0.148695776358549 1 0.0592679679393768 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR3 ENSG00000065183 CDS Human protein_coding chr1:118499775 chr1:118499758 nonsynonymous SNV 0.721 0 4 hm5C_associated_SNPs_19126 0 0 1 0 2 WDR3 chr1:118499819 5'GT 118499819 Upstream 62bp
chr1 44878381 44878381 1 + T A COAD 44878373 + 44878353 44878393 41 ATCGGGAAGCCTCATCTAGCCCAGAGGATCGGAATGACAGA ATCGGGAAGCCTCATCTAGCCCAGAGGAACGGAATGACAGA < 41bp 1 0.484640419738627 1 0.279859185218811 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878373 chr1:44878381 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_19129 0 0 1 0 1 RNF220 chr1:44878394 5'GT 44878394 Upstream 14bp
chr1 44878381 44878381 1 + T A COAD 44878382 + 44878362 44878402 41 CCTCATCTAGCCCAGAGGATCGGAATGACAGATGTAAGTAC CCTCATCTAGCCCAGAGGAACGGAATGACAGATGTAAGTAC < 41bp 1 0.658083941541611 1 0.422470837831497 experiment 0.683832116916779 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878382 chr1:44878381 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_19130 0 0 1 0 1 RNF220 chr1:44878394 5'GT 44878394 Upstream 14bp
chr20 30366755 30366755 1 + G T COAD 30366771 + 30366751 30366791 41 AACAGATATCATTTGAGGAGCAAGAAGGATGATATTAGTAA AACATATATCATTTGAGGAGCAAGAAGGATGATATTAGTAA < 41bp 1 0.44402472971295 1 0.321256518363953 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30366771 chr20:30366755 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_19132 0 0 1 0 1 TPX2 chr20:30366787 5'GT 30366787 Upstream 33bp
chr17 79652702 79652702 1 + C T COAD 79652714 + 79652694 79652734 41 GACCTGATCCGCCAAGGGGACACACAGTGAGTTAGCGGGGC GACCTGATTCGCCAAGGGGACACACAGTGAGTTAGCGGGGC < 41bp 1 0.21751902267479 1 0.163092046976089 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79652714 chr17:79652702 synonymous SNV . 0 9 hm5C_associated_SNPs_19134 0 0 1 0 2 HGS chr17:79652635 3'AG 79652635 Downstream 68bp
chr17 79652702 79652702 1 + C T COAD 79652714 + 79652694 79652734 41 GACCTGATCCGCCAAGGGGACACACAGTGAGTTAGCGGGGC GACCTGATTCGCCAAGGGGACACACAGTGAGTTAGCGGGGC < 41bp 1 0.21751902267479 1 0.163092046976089 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79652714 chr17:79652702 synonymous SNV . 0 9 hm5C_associated_SNPs_19134 0 0 1 0 2 HGS chr17:79652719 5'GT 79652719 Upstream 18bp
chr11 65402839 65402839 1 + C T COAD 65402834 + 65402814 65402854 41 CAACACGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATG CAACACGCCCTCCCTGCTGGCGCTGTGCCATGTCCTGGATG < 41bp 1 0.139358763411736 1 0.048319548368454 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402834 chr11:65402839 nonsynonymous SNV 0.996 4 26 hm5C_associated_SNPs_19135 0 0 1 0 1 PCNX3 chr11:65402919 5'GT 65402919 Upstream 81bp
chr11 65402839 65402839 1 + C T COAD 65402836 + 65402816 65402856 41 ACACGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGAT ACACGCCCTCCCTGCTGGCGCTGTGCCATGTCCTGGATGAT < 41bp 1 0.0629624824244801 1 0.0723572075366974 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402836 chr11:65402839 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_19136 0 0 1 0 1 PCNX3 chr11:65402919 5'GT 65402919 Upstream 81bp
chr11 65402839 65402839 1 + C T COAD 65402841 + 65402821 65402861 41 CCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCCTC CCCTCCCTGCTGGCGCTGTGCCATGTCCTGGATGATGCCTC < 41bp 1 0.0634898625887116 1 0.127528667449951 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402841 chr11:65402839 nonsynonymous SNV 0.996 4 19 hm5C_associated_SNPs_19137 0 0 1 0 1 PCNX3 chr11:65402919 5'GT 65402919 Upstream 81bp
chr11 65402839 65402839 1 + C T COAD 65402842 + 65402822 65402862 41 CCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCCTCC CCTCCCTGCTGGCGCTGTGCCATGTCCTGGATGATGCCTCC < 41bp 1 0.130088402806578 1 0.373545110225677 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402842 chr11:65402839 nonsynonymous SNV 0.996 4 18 hm5C_associated_SNPs_19138 0 0 1 0 1 PCNX3 chr11:65402919 5'GT 65402919 Upstream 81bp
chr6 35715391 35715391 1 + G T COAD 35715401 + 35715381 35715421 41 TGGCACAGAAGAATGACCTTCTCTATGACATTCTCAACTGC TGGCACAGAATAATGACCTTCTCTATGACATTCTCAACTGC < 41bp 1 0.481057986182596 1 0.842925786972046 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ARMC12 ENSG00000157343 CDS Human protein_coding chr6:35715401 chr6:35715391 nonsynonymous SNV 0.999 1 11 hm5C_associated_SNPs_19139 0 0 0 0 2 ARMC12 chr6:35715353 3'AG 35715353 Downstream 39bp
chr6 35715391 35715391 1 + G T COAD 35715401 + 35715381 35715421 41 TGGCACAGAAGAATGACCTTCTCTATGACATTCTCAACTGC TGGCACAGAATAATGACCTTCTCTATGACATTCTCAACTGC < 41bp 1 0.481057986182596 1 0.842925786972046 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ARMC12 ENSG00000157343 CDS Human protein_coding chr6:35715401 chr6:35715391 nonsynonymous SNV 0.999 1 11 hm5C_associated_SNPs_19139 0 0 0 0 2 ARMC12 chr6:35715424 5'GT 35715424 Upstream 34bp
chr3 155628648 155628648 1 + G T COAD 155628644 + 155628624 155628664 41 CTTGAGTGTATTCGAGAGATCAAAGAGAGAGTAGGCACGTC CTTGAGTGTATTCGAGAGATCAAATAGAGAGTAGGCACGTC < 41bp 1 0.337205732178715 1 0.130421429872513 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GMPS ENSG00000163655 CDS Human protein_coding chr3:155628644 chr3:155628648 stopgain 0.998 1 25 hm5C_associated_SNPs_19141 0 0 1 0 1 GMPS chr3:155628674 5'GT 155628674 Upstream 27bp
chr16 4700474 4700474 1 + G A COAD 4700472 + 4700452 4700492 41 GATCTGAACTTCCTGGGCAGCCGCCCGGTCCAGGTGGGTCT GATCTGAACTTCCTGGGCAGCCACCCGGTCCAGGTGGGTCT < 41bp 1 0.0618634703234344 1 0.0633126795291901 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MGRN1 ENSG00000102858 CDS Human protein_coding chr16:4700472 chr16:4700474 nonsynonymous SNV 0.600 4 23 hm5C_associated_SNPs_19142 0 0 1 0 1 MGRN1 chr16:4700484 5'GT 4700484 Upstream 11bp
chr22 38282822 38282822 1 + C A COAD 38282832 + 38282812 38282852 41 ATGGGGATTTCTTCATCCGTCAGATCCACAAATTTGAGGAG ATGGGGATTTATTCATCCGTCAGATCCACAAATTTGAGGAG < 41bp 1 0.403258155830633 1 0.658248841762543 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3L ENSG00000100129 CDS Human protein_coding chr22:38282832 chr22:38282822 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_19143 0 0 1 0 2 EIF3L chr22:38282772 3'AG 38282772 Downstream 51bp
chr22 38282822 38282822 1 + C A COAD 38282832 + 38282812 38282852 41 ATGGGGATTTCTTCATCCGTCAGATCCACAAATTTGAGGAG ATGGGGATTTATTCATCCGTCAGATCCACAAATTTGAGGAG < 41bp 1 0.403258155830633 1 0.658248841762543 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3L ENSG00000100129 CDS Human protein_coding chr22:38282832 chr22:38282822 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_19143 0 0 1 0 2 EIF3L chr22:38282852 5'GT 38282852 Upstream 31bp
chr10 118305632 118305632 1 + C A COAD 118305648 + 118305628 118305668 41 ACTGCTGCTGGGAGCAGTAGCAGGTAAGAAAACAAATAAAT ACTGATGCTGGGAGCAGTAGCAGGTAAGAAAACAAATAAAT < 41bp 1 0.717990507914023 1 0.816380798816681 experiment 0.564018984171955 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118305648 chr10:118305632 nonsynonymous SNV 0.990 2 5 hm5C_associated_SNPs_19144 0 0 0 0 2 PNLIP chr10:118305605 3'AG 118305605 Downstream 28bp
chr10 118305632 118305632 1 + C A COAD 118305648 + 118305628 118305668 41 ACTGCTGCTGGGAGCAGTAGCAGGTAAGAAAACAAATAAAT ACTGATGCTGGGAGCAGTAGCAGGTAAGAAAACAAATAAAT < 41bp 1 0.717990507914023 1 0.816380798816681 experiment 0.564018984171955 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118305648 chr10:118305632 nonsynonymous SNV 0.990 2 5 hm5C_associated_SNPs_19144 0 0 0 0 2 PNLIP chr10:118305650 5'GT 118305650 Upstream 19bp
chr6 3152726 3152726 1 + C T COAD 3152743 + 3152723 3152763 41 CTGCATTTGATGCCAGAAGGCAAACACAACCTGCATTTGCG CTGTATTTGATGCCAGAAGGCAAACACAACCTGCATTTGCG < 41bp 1 0.116678875720697 1 0.420662045478821 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BPHL ENSG00000137274 CDS Human protein_coding chr6:3152743 chr6:3152726 nonsynonymous SNV 0.999 1 4 hm5C_associated_SNPs_19145 0 0 1 0 1 BPHL chr6:3152722 3'AG 3152722 Downstream 5bp
chr9 134064461 134064461 1 + A G COAD 134064468 + 134064448 134064488 41 AATAAATTCCCTTAAGCCATCTGGGCCTACACCAGCATCCG AATAAATTCCCTTGAGCCATCTGGGCCTACACCAGCATCCG < 41bp 1 0.588606127793228 1 0.739716470241547 experiment 0.822787744413544 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP214 ENSG00000126883 CDS Human protein_coding chr9:134064468 chr9:134064461 nonsynonymous SNV 0.931 3 14 hm5C_associated_SNPs_19146 0 0 1 2 2 NUP214 chr9:134064440 3'AG 134064440 Downstream 22bp
chr9 134064461 134064461 1 + A G COAD 134064468 + 134064448 134064488 41 AATAAATTCCCTTAAGCCATCTGGGCCTACACCAGCATCCG AATAAATTCCCTTGAGCCATCTGGGCCTACACCAGCATCCG < 41bp 1 0.588606127793228 1 0.739716470241547 experiment 0.822787744413544 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP214 ENSG00000126883 CDS Human protein_coding chr9:134064468 chr9:134064461 nonsynonymous SNV 0.931 3 14 hm5C_associated_SNPs_19146 0 0 1 2 2 NUP214 chr9:134064518 5'GT 134064518 Upstream 58bp
chr4 79437039 79437039 1 + C T COAD 79437053 + 79437033 79437073 41 AGCGTGCGAGAGCCGAAGACCATCCAGCTCTACAAACACCT AGCGTGTGAGAGCCGAAGACCATCCAGCTCTACAAACACCT < 41bp 1 0.0523888385837216 1 0.0840206742286682 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79437053 chr4:79437039 stopgain 0.272 1 7 hm5C_associated_SNPs_19147 0 0 1 0 1 FRAS1 chr4:79436953 3'AG 79436953 Downstream 87bp
chr14 21963418 21963418 1 + T G COAD 21963398 + 21963378 21963418 41 CTTCTCACAGGTTGAGTCTCCTTCTCAGATGGATGTTGAAT CTTCTCACAGGTTGAGTCTCCTTCTCAGATGGATGTTGAAG < 41bp 1 0.106124277697675 1 0.0305834412574768 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOX4 ENSG00000092203 CDS Human protein_coding chr14:21963398 chr14:21963418 nonsynonymous SNV 1.000 0 41 hm5C_associated_SNPs_19148 0 0 1 0 1 TOX4 chr14:21963388 3'AG 21963388 Downstream 31bp
chr15 69006921 69006921 1 + C T COAD 69006906 + 69006886 69006926 41 CTTCTCCCTCAGGAGGACCTCTCCATGCCCCTGATCGAAGA CTTCTCCCTCAGGAGGACCTCTCCATGCCCCTGATTGAAGA < 41bp 1 0.772582448428657 1 0.969016432762146 experiment 0.454835103142686 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CORO2B ENSG00000103647 CDS Human protein_coding chr15:69006906 chr15:69006921 synonymous SNV . 0 36 hm5C_associated_SNPs_19151 0 0 0 0 2 CORO2B chr15:69006898 3'AG 69006898 Downstream 24bp
chr15 69006921 69006921 1 + C T COAD 69006906 + 69006886 69006926 41 CTTCTCCCTCAGGAGGACCTCTCCATGCCCCTGATCGAAGA CTTCTCCCTCAGGAGGACCTCTCCATGCCCCTGATTGAAGA < 41bp 1 0.772582448428657 1 0.969016432762146 experiment 0.454835103142686 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CORO2B ENSG00000103647 CDS Human protein_coding chr15:69006906 chr15:69006921 synonymous SNV . 0 36 hm5C_associated_SNPs_19151 0 0 0 0 2 CORO2B chr15:69007002 5'GT 69007002 Upstream 82bp
chr2 189858184 189858184 1 + C A COAD 189858166 + 189858146 189858186 41 ACCTGGACCTCAGGGACACGCTGGTGCTCAAGGTCCTCCTG ACCTGGACCTCAGGGACACGCTGGTGCTCAAGGTCCTCATG < 41bp 1 0.652353831147488 1 0.153252094984055 experiment 0.695292337705023 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189858166 chr2:189858184 nonsynonymous SNV 0.994 4 39 hm5C_associated_SNPs_19152 0 0 0 0 1 COL3A1 chr2:189858185 5'GT 189858185 Upstream 2bp
chr19 14574934 14574934 1 + C T COAD 14574942 + 14574922 14574962 41 CTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCCCATCGAGC CTCAGAAGAGCTTGCGGGATCCTCCTTCCAGCCCATCGAGC < 41bp 1 0.0584138640879924 1 0.182464390993118 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574942 chr19:14574934 nonsynonymous SNV 0.016 0 13 hm5C_associated_SNPs_19153 0 0 1 0 2 PKN1 chr19:14574872 3'AG 14574872 Downstream 63bp
chr19 14574934 14574934 1 + C T COAD 14574942 + 14574922 14574962 41 CTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCCCATCGAGC CTCAGAAGAGCTTGCGGGATCCTCCTTCCAGCCCATCGAGC < 41bp 1 0.0584138640879924 1 0.182464390993118 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574942 chr19:14574934 nonsynonymous SNV 0.016 0 13 hm5C_associated_SNPs_19153 0 0 1 0 2 PKN1 chr19:14574965 5'GT 14574965 Upstream 32bp
chr12 62938743 62938743 1 + A C COAD 62938730 + 62938710 62938750 41 ATGGGGAGCAGAAGCTTTAACTTCTCTTATTAAAGCAGGAT ATGGGGAGCAGAAGCTTTAACTTCTCTTATTAACGCAGGAT < 41bp 1 0.216997939369292 1 0.26512411236763 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62938730 chr12:62938743 nonsynonymous SNV 0.997 4 34 hm5C_associated_SNPs_19157 0 0 1 0 2 MON2 chr12:62938678 3'AG 62938678 Downstream 66bp
chr12 62938743 62938743 1 + A C COAD 62938730 + 62938710 62938750 41 ATGGGGAGCAGAAGCTTTAACTTCTCTTATTAAAGCAGGAT ATGGGGAGCAGAAGCTTTAACTTCTCTTATTAACGCAGGAT < 41bp 1 0.216997939369292 1 0.26512411236763 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62938730 chr12:62938743 nonsynonymous SNV 0.997 4 34 hm5C_associated_SNPs_19157 0 0 1 0 2 MON2 chr12:62938788 5'GT 62938788 Upstream 46bp
chr15 63866324 63866324 1 + G A COAD 63866342 + 63866322 63866362 41 CAGAATCTAGAAAGTTTGATCCATTCCTAGGTAAGATATAT CAAAATCTAGAAAGTTTGATCCATTCCTAGGTAAGATATAT < 41bp 1 0.016054118645578 1 0.0899722576141357 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP3 ENSG00000140455 CDS Human protein_coding chr15:63866342 chr15:63866324 nonsynonymous SNV 0.999 2 3 hm5C_associated_SNPs_19158 0 0 1 1 2 USP3 chr15:63866245 3'AG 63866245 Downstream 80bp
chr15 63866324 63866324 1 + G A COAD 63866342 + 63866322 63866362 41 CAGAATCTAGAAAGTTTGATCCATTCCTAGGTAAGATATAT CAAAATCTAGAAAGTTTGATCCATTCCTAGGTAAGATATAT < 41bp 1 0.016054118645578 1 0.0899722576141357 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP3 ENSG00000140455 CDS Human protein_coding chr15:63866342 chr15:63866324 nonsynonymous SNV 0.999 2 3 hm5C_associated_SNPs_19158 0 0 1 1 2 USP3 chr15:63866351 5'GT 63866351 Upstream 28bp
chr2 27440801 27440801 1 + G A COAD 27440789 + 27440769 27440809 41 ACCCCGAGGCCCTCACCGATCCCTCCTACAAGGCACAGATC ACCCCGAGGCCCTCACCGATCCCTCCTACAAGACACAGATC < 41bp 1 0.0420758146333295 1 0.277431845664978 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27440789 chr2:27440801 nonsynonymous SNV 0.994 3 33 hm5C_associated_SNPs_19159 0 0 1 0 1 CAD chr2:27440884 5'GT 27440884 Upstream 84bp
chr1 162740231 162740231 1 + G A COAD 162740248 + 162740228 162740268 41 TTCGCCCTGACTACCAGGAGCCATCCAGGCTGATACGAAAA TTCACCCTGACTACCAGGAGCCATCCAGGCTGATACGAAAA < 41bp 1 0.0150402350262516 1 0.059980720281601 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162740248 chr1:162740231 nonsynonymous SNV 0.998 1 4 hm5C_associated_SNPs_19160 0 0 0 0 1 DDR2 chr1:162740302 5'GT 162740302 Upstream 72bp
chr9 72879294 72879294 1 + C T COAD 72879285 + 72879265 72879305 41 GATCGTTGGAGCCAATGGAACAGGGAAGTCGAGCATTGTGT GATCGTTGGAGCCAATGGAACAGGGAAGTTGAGCATTGTGT < 41bp 1 0.773110922756758 1 0.740669786930084 experiment 0.453778154486483 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMC5 ENSG00000198887 CDS Human protein_coding chr9:72879285 chr9:72879294 nonsynonymous SNV 0.958 5 30 hm5C_associated_SNPs_19162 0 0 1 0 2 SMC5 chr9:72879220 3'AG 72879220 Downstream 75bp
chr9 72879294 72879294 1 + C T COAD 72879285 + 72879265 72879305 41 GATCGTTGGAGCCAATGGAACAGGGAAGTCGAGCATTGTGT GATCGTTGGAGCCAATGGAACAGGGAAGTTGAGCATTGTGT < 41bp 1 0.773110922756758 1 0.740669786930084 experiment 0.453778154486483 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMC5 ENSG00000198887 CDS Human protein_coding chr9:72879285 chr9:72879294 nonsynonymous SNV 0.958 5 30 hm5C_associated_SNPs_19162 0 0 1 0 2 SMC5 chr9:72879361 5'GT 72879361 Upstream 68bp
chr2 138762743 138762743 1 + C A COAD 138762727 + 138762707 138762747 41 GTATTATGTAAAAGACATCCCAGCTACCCTGAAATTCTTCC GTATTATGTAAAAGACATCCCAGCTACCCTGAAATTATTCC < 41bp 1 0.247818474199714 1 0.353600829839706 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HNMT ENSG00000150540 CDS Human protein_coding chr2:138762727 chr2:138762743 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_19163 0 0 1 0 2 HNMT chr2:138762702 3'AG 138762702 Downstream 42bp
chr2 138762743 138762743 1 + C A COAD 138762727 + 138762707 138762747 41 GTATTATGTAAAAGACATCCCAGCTACCCTGAAATTCTTCC GTATTATGTAAAAGACATCCCAGCTACCCTGAAATTATTCC < 41bp 1 0.247818474199714 1 0.353600829839706 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HNMT ENSG00000150540 CDS Human protein_coding chr2:138762727 chr2:138762743 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_19163 0 0 1 0 2 HNMT chr2:138762795 5'GT 138762795 Upstream 53bp
chr11 10774310 10774310 1 + C A COAD 10774299 + 10774279 10774319 41 CAGGAACACACACAACTGCACATATGGATTGCTTTGGCGGT CAGGAACACACACAACTGCACATATGGATTGATTTGGCGGT < 41bp 1 0.0720905746322475 1 0.0445173382759094 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CTR9 ENSG00000198730 CDS Human protein_coding chr11:10774299 chr11:10774310 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_19164 0 0 0 0 2 CTR9 chr11:10774219 3'AG 10774219 Downstream 92bp
chr11 10774310 10774310 1 + C A COAD 10774299 + 10774279 10774319 41 CAGGAACACACACAACTGCACATATGGATTGCTTTGGCGGT CAGGAACACACACAACTGCACATATGGATTGATTTGGCGGT < 41bp 1 0.0720905746322475 1 0.0445173382759094 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CTR9 ENSG00000198730 CDS Human protein_coding chr11:10774299 chr11:10774310 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_19164 0 0 0 0 2 CTR9 chr11:10774317 5'GT 10774317 Upstream 8bp
chr19 49469171 49469171 1 + A G COAD 49469156 + 49469136 49469176 41 ACCAGCGTGGCGGCCGCGCTCTCTTCCAGGACATCAAGGTA ACCAGCGTGGCGGCCGCGCTCTCTTCCAGGACATCGAGGTA < 41bp 1 0.415968600907625 1 0.136418610811234 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469156 chr19:49469171 nonsynonymous SNV 0.569 0 36 hm5C_associated_SNPs_19166 0 0 1 0 1 FTL chr19:49469173 5'GT 49469173 Upstream 3bp
chr19 49469171 49469171 1 + A G COAD 49469161 + 49469141 49469181 41 CGTGGCGGCCGCGCTCTCTTCCAGGACATCAAGGTAACTAG CGTGGCGGCCGCGCTCTCTTCCAGGACATCGAGGTAACTAG < 41bp 1 0.681665743923662 1 0.803046584129333 experiment 0.636668512152677 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469161 chr19:49469171 nonsynonymous SNV 0.569 0 31 hm5C_associated_SNPs_19167 0 0 1 0 1 FTL chr19:49469173 5'GT 49469173 Upstream 3bp
chr21 46900063 46900063 1 + A G COAD 46900048 + 46900028 46900068 41 GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACGACAAGC GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACGGCAAGC < 41bp 1 0.0592770102491058 1 0.060441642999649 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900048 chr21:46900063 nonsynonymous SNV 0.877 3 36 hm5C_associated_SNPs_19168 0 0 0 0 2 COL18A1 chr21:46899984 3'AG 46899984 Downstream 80bp
chr21 46900063 46900063 1 + A G COAD 46900048 + 46900028 46900068 41 GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACGACAAGC GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACGGCAAGC < 41bp 1 0.0592770102491058 1 0.060441642999649 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900048 chr21:46900063 nonsynonymous SNV 0.877 3 36 hm5C_associated_SNPs_19168 0 0 0 0 2 COL18A1 chr21:46900070 5'GT 46900070 Upstream 8bp
chrX 68059878 68059878 1 + C T COAD 68059888 + 68059868 68059908 41 GTCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT GTCAAGATGGTCACACAGGCCCCTGGTAGTCGGGGCTCCCT < 41bp 1 0.174507985964225 1 0.080784946680069 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059888 chrX:68059878 nonsynonymous SNV 0.736 1 11 hm5C_associated_SNPs_19169 0 0 0 0 2 EFNB1 chrX:68059803 3'AG 68059803 Downstream 76bp
chrX 68059878 68059878 1 + C T COAD 68059888 + 68059868 68059908 41 GTCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT GTCAAGATGGTCACACAGGCCCCTGGTAGTCGGGGCTCCCT < 41bp 1 0.174507985964225 1 0.080784946680069 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059888 chrX:68059878 nonsynonymous SNV 0.736 1 11 hm5C_associated_SNPs_19169 0 0 0 0 2 EFNB1 chrX:68059931 5'GT 68059931 Upstream 54bp
chr6 147830463 147830463 1 + G T COAD 147830460 + 147830440 147830480 41 CCCAAACTGAAGCTGAAGATCATGATCAGGGATAAGCTCGT CCCAAACTGAAGCTGAAGATCATTATCAGGGATAAGCTCGT < 41bp 1 0.361740853401063 1 0.0756921768188477 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SAMD5 ENSG00000203727 CDS Human protein_coding chr6:147830460 chr6:147830463 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_19171 0 0 0 0 1 SAMD5 chr6:147830523 5'GT 147830523 Upstream 61bp
chr15 25213166 25213166 1 + G T COAD 25213171 + 25213151 25213191 41 GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA GGCATTCTTAGCTGATACACCAAGAGGTGGTTAAAGCCATA < 41bp 1 0.79141259696883 1 0.367035746574402 experiment 0.41717480606234 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNURF ENSG00000214265;ENSG00000273173 CDS Human other chr15:25213171 chr15:25213166 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_19172 0 0 0 0 2 SNURF chr15:25213079 3'AG 25213079 Downstream 88bp
chr15 25213166 25213166 1 + G T COAD 25213171 + 25213151 25213191 41 GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA GGCATTCTTAGCTGATACACCAAGAGGTGGTTAAAGCCATA < 41bp 1 0.79141259696883 1 0.367035746574402 experiment 0.41717480606234 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNURF ENSG00000214265;ENSG00000273173 CDS Human other chr15:25213171 chr15:25213166 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_19172 0 0 0 0 2 SNHG14 chr15:25213229 5'GT 25213229 Upstream 64bp
chr22 42042972 42042972 1 + G T COAD 42042976 + 42042956 42042996 41 TCCAGAAGGCTCTCAAGCCTCCTCCAATAAAGCTCTATCGG TCCAGAAGGCTCTCAATCCTCCTCCAATAAAGCTCTATCGG < 41bp 1 0.13448940973726 1 0.392212569713593 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42042976 chr22:42042972 nonsynonymous SNV 0.357 4 17 hm5C_associated_SNPs_19177 0 0 1 0 1 XRCC6 chr22:42042900 3'AG 42042900 Downstream 73bp
chr15 90617494 90617494 1 + C T COAD 90617476 + 90617456 90617496 41 AAGGGCAACCTGAGCCGGCACATGAAGGTCAAGCATGGCGT AAGGGCAACCTGAGCCGGCACATGAAGGTCAAGCATGGTGT < 41bp 1 0.430577415118398 1 0.182442873716354 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF710 ENSG00000140548 CDS Human protein_coding chr15:90617476 chr15:90617494 synonymous SNV . 0 39 hm5C_associated_SNPs_19178 0 0 1 0 1 ZNF710 chr15:90617522 5'GT 90617522 Upstream 29bp
chr17 71239108 71239108 1 + C T COAD 71239105 + 71239085 71239125 41 ACGATGCTCTTCACAGGATACTTCGTCCTGTGTTGTAGCTG ACGATGCTCTTCACAGGATACTTTGTCCTGTGTTGTAGCTG < 41bp 1 0.19691800652301 1 0.0166423320770264 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71239105 chr17:71239108 synonymous SNV . 0 24 hm5C_associated_SNPs_19179 0 0 1 0 2 C17orf80 chr17:71239035 3'AG 71239035 Downstream 74bp
chr17 71239108 71239108 1 + C T COAD 71239105 + 71239085 71239125 41 ACGATGCTCTTCACAGGATACTTCGTCCTGTGTTGTAGCTG ACGATGCTCTTCACAGGATACTTTGTCCTGTGTTGTAGCTG < 41bp 1 0.19691800652301 1 0.0166423320770264 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71239105 chr17:71239108 synonymous SNV . 0 24 hm5C_associated_SNPs_19179 0 0 1 0 2 C17orf80 chr17:71239142 5'GT 71239142 Upstream 35bp
chr1 183103801 183103801 1 + G A COAD 183103802 + 183103782 183103822 41 TTGCTTTTCACAGAATGAAGCAAATAACATAAAGATGGAAG TTGCTTTTCACAGAATGAAACAAATAACATAAAGATGGAAG < 41bp 1 0.038256596782195 1 0.513730823993683 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183103802 chr1:183103801 nonsynonymous SNV 0.998 1 20 hm5C_associated_SNPs_19180 0 0 1 0 1 LAMC1 chr1:183103795 3'AG 183103795 Downstream 7bp
chr2 158157417 158157417 1 + A G COAD 158157419 + 158157399 158157439 41 ACCTCACCCAGCAAAGGGAGCTGCGAAAGAAACTGAAGTGC ACCTCACCCAGCAAAGGGGGCTGCGAAAGAAACTGAAGTGC < 41bp 1 0.4869306744777 1 0.172513782978058 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT5 ENSG00000136542 CDS Human protein_coding chr2:158157419 chr2:158157417 nonsynonymous SNV 0.990 0 19 hm5C_associated_SNPs_19181 0 0 0 0 1 GALNT5 chr2:158157511 5'GT 158157511 Upstream 95bp
chr17 4435901 4435901 1 + G A COAD 4435915 + 4435895 4435935 41 CTAAAAGGGGTCATGCCGACCAGCTCGGGGACCAGCTCAAG CTAAAAAGGGTCATGCCGACCAGCTCGGGGACCAGCTCAAG < 41bp 1 0.337110384452338 1 0.305902719497681 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4435915 chr17:4435901 nonsynonymous SNV 0.921 3 7 hm5C_associated_SNPs_19182 0 0 0 0 2 SPNS2 chr17:4435837 3'AG 4435837 Downstream 65bp
chr17 4435901 4435901 1 + G A COAD 4435915 + 4435895 4435935 41 CTAAAAGGGGTCATGCCGACCAGCTCGGGGACCAGCTCAAG CTAAAAAGGGTCATGCCGACCAGCTCGGGGACCAGCTCAAG < 41bp 1 0.337110384452338 1 0.305902719497681 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4435915 chr17:4435901 nonsynonymous SNV 0.921 3 7 hm5C_associated_SNPs_19182 0 0 0 0 2 SPNS2 chr17:4435979 5'GT 4435979 Upstream 79bp
chr19 54969690 54969690 1 + A G COAD 54969680 + 54969660 54969700 41 GATCGGGAGCGCAAGGTCGCCCTCAAGGCCATGATCAAAAC GATCGGGAGCGCAAGGTCGCCCTCAAGGCCGTGATCAAAAC < 41bp 1 0.120627919091601 1 0.28127783536911 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54969680 chr19:54969690 nonsynonymous SNV 0.999 1 31 hm5C_associated_SNPs_19188 0 0 1 0 1 LENG8 chr19:54969700 5'GT 54969700 Upstream 11bp
chr16 28970042 28970042 1 + A G COAD 28970039 + 28970019 28970059 41 TTGTTGTCCCCATCCCTAGTCGGAGCCCCTGCAGAGTGTGG TTGTTGTCCCCATCCCTAGTCGGGGCCCCTGCAGAGTGTGG < 41bp 1 0.735498207522999 1 0.932407855987549 experiment 0.529003584954003 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28970039 chr16:28970042 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_19189 0 0 1 0 1 NFATC2IP chr16:28970038 3'AG 28970038 Downstream 5bp
chr1 16778426 16778426 1 + A G COAD 16778415 + 16778395 16778435 41 GCTGAGCCTGCTTCCCCCTCCCCCAGGGGGGAAAACCTCCA GCTGAGCCTGCTTCCCCCTCCCCCAGGGGGGGAAACCTCCA < 41bp 1 0.739081132349245 1 0.383174419403076 experiment 0.521837735301511 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778415 chr1:16778426 nonsynonymous SNV 0.906 1 32 hm5C_associated_SNPs_19190 0 0 1 0 2 NECAP2 chr1:16778333 3'AG 16778333 Downstream 94bp
chr1 16778426 16778426 1 + A G COAD 16778415 + 16778395 16778435 41 GCTGAGCCTGCTTCCCCCTCCCCCAGGGGGGAAAACCTCCA GCTGAGCCTGCTTCCCCCTCCCCCAGGGGGGGAAACCTCCA < 41bp 1 0.739081132349245 1 0.383174419403076 experiment 0.521837735301511 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778415 chr1:16778426 nonsynonymous SNV 0.906 1 32 hm5C_associated_SNPs_19190 0 0 1 0 2 NECAP2 chr1:16778510 5'GT 16778510 Upstream 85bp
chr1 16778426 16778426 1 + A G COAD 16778416 + 16778396 16778436 41 CTGAGCCTGCTTCCCCCTCCCCCAGGGGGGAAAACCTCCAC CTGAGCCTGCTTCCCCCTCCCCCAGGGGGGGAAACCTCCAC < 41bp 1 0.678056908606644 1 0.502085387706757 experiment 0.643886182786712 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778416 chr1:16778426 nonsynonymous SNV 0.906 1 31 hm5C_associated_SNPs_19191 0 0 1 0 2 NECAP2 chr1:16778333 3'AG 16778333 Downstream 94bp
chr1 16778426 16778426 1 + A G COAD 16778416 + 16778396 16778436 41 CTGAGCCTGCTTCCCCCTCCCCCAGGGGGGAAAACCTCCAC CTGAGCCTGCTTCCCCCTCCCCCAGGGGGGGAAACCTCCAC < 41bp 1 0.678056908606644 1 0.502085387706757 experiment 0.643886182786712 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778416 chr1:16778426 nonsynonymous SNV 0.906 1 31 hm5C_associated_SNPs_19191 0 0 1 0 2 NECAP2 chr1:16778510 5'GT 16778510 Upstream 85bp
chr1 16778426 16778426 1 + A G COAD 16778417 + 16778397 16778437 41 TGAGCCTGCTTCCCCCTCCCCCAGGGGGGAAAACCTCCACC TGAGCCTGCTTCCCCCTCCCCCAGGGGGGGAAACCTCCACC < 41bp 1 0.71950325389472 1 0.41720986366272 experiment 0.56099349221056 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778417 chr1:16778426 nonsynonymous SNV 0.906 1 30 hm5C_associated_SNPs_19192 0 0 1 0 2 NECAP2 chr1:16778333 3'AG 16778333 Downstream 94bp
chr1 16778426 16778426 1 + A G COAD 16778417 + 16778397 16778437 41 TGAGCCTGCTTCCCCCTCCCCCAGGGGGGAAAACCTCCACC TGAGCCTGCTTCCCCCTCCCCCAGGGGGGGAAACCTCCACC < 41bp 1 0.71950325389472 1 0.41720986366272 experiment 0.56099349221056 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778417 chr1:16778426 nonsynonymous SNV 0.906 1 30 hm5C_associated_SNPs_19192 0 0 1 0 2 NECAP2 chr1:16778510 5'GT 16778510 Upstream 85bp
chr4 160264476 160264476 1 + A G COAD 160264487 + 160264467 160264507 41 TGAGAAGCTAAGGATGATTGCAAAAGAAATTCGTCACGTTG TGAGAAGCTGAGGATGATTGCAAAAGAAATTCGTCACGTTG < 41bp 1 0.672128487898212 1 0.724372684955597 experiment 0.655743024203575 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160264487 chr4:160264476 synonymous SNV . 0 10 hm5C_associated_SNPs_19194 0 0 1 0 2 RAPGEF2 chr4:160264433 3'AG 160264433 Downstream 44bp
chr4 160264476 160264476 1 + A G COAD 160264487 + 160264467 160264507 41 TGAGAAGCTAAGGATGATTGCAAAAGAAATTCGTCACGTTG TGAGAAGCTGAGGATGATTGCAAAAGAAATTCGTCACGTTG < 41bp 1 0.672128487898212 1 0.724372684955597 experiment 0.655743024203575 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160264487 chr4:160264476 synonymous SNV . 0 10 hm5C_associated_SNPs_19194 0 0 1 0 2 RAPGEF2 chr4:160264556 5'GT 160264556 Upstream 81bp
chr12 95681545 95681545 1 + T G COAD 95681551 + 95681531 95681571 41 AAATTAAAGTTGATTCAGCCCCACGTTCAAGCAAGCAACAA AAATTAAAGTTGATGCAGCCCCACGTTCAAGCAAGCAACAA < 41bp 1 0.476157075621064 1 0.0341781377792358 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VEZT ENSG00000028203 CDS Human protein_coding chr12:95681551 chr12:95681545 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_19195 0 0 0 0 1 VEZT chr12:95681633 5'GT 95681633 Upstream 89bp
chr12 132588983 132588983 1 + C T COAD 132588965 + 132588945 132588985 41 AGCCCAGTCCGGGGCCGGGGCAGGCCTTGCAGAATGTGCGT AGCCCAGTCCGGGGCCGGGGCAGGCCTTGCAGAATGTGTGT < 41bp 1 0.581068096812652 1 0.503284573554993 experiment 0.837863806374696 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588965 chr12:132588983 nonsynonymous SNV 0.327 3 39 hm5C_associated_SNPs_19196 0 0 1 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 61bp
chr12 132588983 132588983 1 + C T COAD 132588993 + 132588973 132589013 41 GCAGAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCC GCAGAATGTGTGTGCAGGTGCCCCTGGCCCTGGGCTGGGCC < 41bp 1 0.256982387688842 1 0.0426687598228455 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588993 chr12:132588983 nonsynonymous SNV 0.327 3 11 hm5C_associated_SNPs_19197 0 0 1 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 61bp
chr12 132588983 132588983 1 + C T COAD 132588994 + 132588974 132589014 41 CAGAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCT CAGAATGTGTGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCT < 41bp 1 0.223960249676631 1 0.0312614440917969 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588994 chr12:132588983 nonsynonymous SNV 0.327 3 10 hm5C_associated_SNPs_19198 0 0 1 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 61bp
chr12 132588983 132588983 1 + C T COAD 132588995 + 132588975 132589015 41 AGAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTC AGAATGTGTGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTC < 41bp 1 0.308028746641791 1 0.0877669453620911 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588995 chr12:132588983 nonsynonymous SNV 0.327 3 9 hm5C_associated_SNPs_19199 0 0 1 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 61bp
chr12 132588983 132588983 1 + C T COAD 132588996 + 132588976 132589016 41 GAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCT GAATGTGTGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCT < 41bp 1 0.532371082573595 1 0.289343625307083 experiment 0.93525783485281 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588996 chr12:132588983 nonsynonymous SNV 0.327 3 8 hm5C_associated_SNPs_19200 0 0 1 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 61bp
chr12 132588983 132588983 1 + C T COAD 132589000 + 132588980 132589020 41 GTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAG GTGTGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAG < 41bp 1 0.27792595235868 1 0.198803216218948 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132589000 chr12:132588983 nonsynonymous SNV 0.327 3 4 hm5C_associated_SNPs_19201 0 0 1 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 61bp
chr12 132588983 132588983 1 + C T COAD 132589001 + 132588981 132589021 41 TGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAGC TGTGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAGC < 41bp 1 0.386837288890342 1 0.618892967700958 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132589001 chr12:132588983 nonsynonymous SNV 0.327 3 3 hm5C_associated_SNPs_19202 0 0 1 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 61bp
chr11 75279869 75279869 1 + G A COAD 75279855 + 75279835 75279875 41 CGGTCCTATACCGTGGGTGTCATGATGATGCACCGGACAGG CGGTCCTATACCGTGGGTGTCATGATGATGCACCAGACAGG < 41bp 1 0.545533548194266 1 0.249376326799393 experiment 0.908932903611467 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279855 chr11:75279869 nonsynonymous SNV 0.999 2 35 hm5C_associated_SNPs_19203 0 0 1 0 2 SERPINH1 chr11:75279776 3'AG 75279776 Downstream 94bp
chr11 75279869 75279869 1 + G A COAD 75279855 + 75279835 75279875 41 CGGTCCTATACCGTGGGTGTCATGATGATGCACCGGACAGG CGGTCCTATACCGTGGGTGTCATGATGATGCACCAGACAGG < 41bp 1 0.545533548194266 1 0.249376326799393 experiment 0.908932903611467 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279855 chr11:75279869 nonsynonymous SNV 0.999 2 35 hm5C_associated_SNPs_19203 0 0 1 0 2 SERPINH1 chr11:75279874 5'GT 75279874 Upstream 6bp
chr3 47032979 47032979 1 + G A COAD 47032971 + 47032951 47032991 41 TGCGGGGCTGGAGCCGTGGGCCAGCCCCGGACCCGTGCCTA TGCGGGGCTGGAGCCGTGGGCCAGCCCCAGACCCGTGCCTA < 41bp 1 0.125946193743921 1 0.65755957365036 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032971 chr3:47032979 synonymous SNV . 0 29 hm5C_associated_SNPs_19204 0 0 0 0 1 NBEAL2 chr3:47032896 3'AG 47032896 Downstream 84bp
chr3 47032979 47032979 1 + G A COAD 47032972 + 47032952 47032992 41 GCGGGGCTGGAGCCGTGGGCCAGCCCCGGACCCGTGCCTAG GCGGGGCTGGAGCCGTGGGCCAGCCCCAGACCCGTGCCTAG < 41bp 1 0.30294113241028 1 0.868809640407562 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032972 chr3:47032979 synonymous SNV . 0 28 hm5C_associated_SNPs_19205 0 0 0 0 1 NBEAL2 chr3:47032896 3'AG 47032896 Downstream 84bp
chr3 47032979 47032979 1 + G A COAD 47032975 + 47032955 47032995 41 GGGCTGGAGCCGTGGGCCAGCCCCGGACCCGTGCCTAGTGC GGGCTGGAGCCGTGGGCCAGCCCCAGACCCGTGCCTAGTGC < 41bp 1 0.479822979309669 1 0.151509016752243 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032975 chr3:47032979 synonymous SNV . 0 25 hm5C_associated_SNPs_19206 0 0 0 0 1 NBEAL2 chr3:47032896 3'AG 47032896 Downstream 84bp
chr3 47032979 47032979 1 + G A COAD 47032976 + 47032956 47032996 41 GGCTGGAGCCGTGGGCCAGCCCCGGACCCGTGCCTAGTGCC GGCTGGAGCCGTGGGCCAGCCCCAGACCCGTGCCTAGTGCC < 41bp 1 0.216931530855632 1 0.647651553153992 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032976 chr3:47032979 synonymous SNV . 0 24 hm5C_associated_SNPs_19207 0 0 0 0 1 NBEAL2 chr3:47032896 3'AG 47032896 Downstream 84bp
chr3 47032979 47032979 1 + G A COAD 47032977 + 47032957 47032997 41 GCTGGAGCCGTGGGCCAGCCCCGGACCCGTGCCTAGTGCCA GCTGGAGCCGTGGGCCAGCCCCAGACCCGTGCCTAGTGCCA < 41bp 1 0.535018145268165 1 0.510604918003082 experiment 0.92996370946367 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032977 chr3:47032979 synonymous SNV . 0 23 hm5C_associated_SNPs_19208 0 0 0 0 1 NBEAL2 chr3:47032896 3'AG 47032896 Downstream 84bp
chr3 47032979 47032979 1 + G A COAD 47032978 + 47032958 47032998 41 CTGGAGCCGTGGGCCAGCCCCGGACCCGTGCCTAGTGCCAC CTGGAGCCGTGGGCCAGCCCCAGACCCGTGCCTAGTGCCAC < 41bp 1 0.271617187516175 1 0.721880733966827 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032978 chr3:47032979 synonymous SNV . 0 22 hm5C_associated_SNPs_19209 0 0 0 0 1 NBEAL2 chr3:47032896 3'AG 47032896 Downstream 84bp
chr3 31658482 31658482 1 + A G COAD 31658471 + 31658451 31658491 41 TCTTGCAGTATCTGAGAGACCGATTAACAAAACAAGAGTTC TCTTGCAGTATCTGAGAGACCGATTAACAAAGCAAGAGTTC < 41bp 1 0.312553303298285 1 0.293170511722565 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STT3B ENSG00000163527 CDS Human protein_coding chr3:31658471 chr3:31658482 synonymous SNV . 0 32 hm5C_associated_SNPs_19222 0 0 1 0 2 STT3B chr3:31658421 3'AG 31658421 Downstream 62bp
chr3 31658482 31658482 1 + A G COAD 31658471 + 31658451 31658491 41 TCTTGCAGTATCTGAGAGACCGATTAACAAAACAAGAGTTC TCTTGCAGTATCTGAGAGACCGATTAACAAAGCAAGAGTTC < 41bp 1 0.312553303298285 1 0.293170511722565 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STT3B ENSG00000163527 CDS Human protein_coding chr3:31658471 chr3:31658482 synonymous SNV . 0 32 hm5C_associated_SNPs_19222 0 0 1 0 2 STT3B chr3:31658567 5'GT 31658567 Upstream 86bp
chr5 139893011 139893011 1 + G A COAD 139893005 + 139892985 139893025 41 TTGTGAAGGCTAAAGACCAGCAAGCTGCAGAAGCAAATAAG TTGTGAAGGCTAAAGACCAGCAAGCTACAGAAGCAAATAAG < 41bp 1 0.177506612548483 1 0.465480446815491 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139893005 chr5:139893011 nonsynonymous SNV 0.997 3 27 hm5C_associated_SNPs_19223 0 0 1 0 2 ANKHD1;ANKHD1-EIF4EBP3 chr5:139892948 3'AG 139892948 Downstream 64bp
chr5 139893011 139893011 1 + G A COAD 139893005 + 139892985 139893025 41 TTGTGAAGGCTAAAGACCAGCAAGCTGCAGAAGCAAATAAG TTGTGAAGGCTAAAGACCAGCAAGCTACAGAAGCAAATAAG < 41bp 1 0.177506612548483 1 0.465480446815491 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139893005 chr5:139893011 nonsynonymous SNV 0.997 3 27 hm5C_associated_SNPs_19223 0 0 1 0 2 ANKHD1;ANKHD1-EIF4EBP3 chr5:139893064 5'GT 139893064 Upstream 54bp
chr1 43900106 43900106 1 + C T COAD 43900109 + 43900089 43900129 41 CTGAGTGTCGCCACCTGCAGCAGCTCCTGGTGAGGCGAGTT CTGAGTGTCGCCACCTGTAGCAGCTCCTGGTGAGGCGAGTT < 41bp 1 0.145133732244385 1 0.444077521562576 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43900109 chr1:43900106 stopgain 1.000 1 18 hm5C_associated_SNPs_19224 0 0 1 0 2 SZT2 chr1:43900057 3'AG 43900057 Downstream 50bp
chr1 43900106 43900106 1 + C T COAD 43900109 + 43900089 43900129 41 CTGAGTGTCGCCACCTGCAGCAGCTCCTGGTGAGGCGAGTT CTGAGTGTCGCCACCTGTAGCAGCTCCTGGTGAGGCGAGTT < 41bp 1 0.145133732244385 1 0.444077521562576 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43900109 chr1:43900106 stopgain 1.000 1 18 hm5C_associated_SNPs_19224 0 0 1 0 2 SZT2 chr1:43900156 5'GT 43900156 Upstream 51bp
chr6 41557797 41557797 1 + G A COAD 41557781 + 41557761 41557801 41 TTCCCAGATGGTCTCGTGCACCCCCCGACCTCGGCCGCAGC TTCCCAGATGGTCTCGTGCACCCCCCGACCTCGGCCACAGC < 41bp 1 0.110182142694698 1 0.0318504869937897 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41557781 chr6:41557797 nonsynonymous SNV 0.388 3 37 hm5C_associated_SNPs_19225 0 0 1 0 2 FOXP4 chr6:41557701 3'AG 41557701 Downstream 97bp
chr6 41557797 41557797 1 + G A COAD 41557781 + 41557761 41557801 41 TTCCCAGATGGTCTCGTGCACCCCCCGACCTCGGCCGCAGC TTCCCAGATGGTCTCGTGCACCCCCCGACCTCGGCCACAGC < 41bp 1 0.110182142694698 1 0.0318504869937897 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41557781 chr6:41557797 nonsynonymous SNV 0.388 3 37 hm5C_associated_SNPs_19225 0 0 1 0 2 FOXP4 chr6:41557737 3'AG 41557737 Downstream 61bp
chr9 2186139 2186139 1 + C T COAD 2186154 + 2186134 2186174 41 GAGTGCCCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGAGG GAGTGTCCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGAGG < 41bp 1 0.226526333162229 1 0.0902314484119415 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2186154 chr9:2186139 nonsynonymous SNV 0.998 1 6 hm5C_associated_SNPs_19226 0 0 1 0 1 SMARCA2 chr9:2186096 3'AG 2186096 Downstream 44bp
chr9 2186139 2186139 1 + C T COAD 2186155 + 2186135 2186175 41 AGTGCCCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGAGGA AGTGTCCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGAGGA < 41bp 1 0.310851358833779 1 0.728354454040527 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2186155 chr9:2186139 nonsynonymous SNV 0.998 1 5 hm5C_associated_SNPs_19227 0 0 1 0 1 SMARCA2 chr9:2186096 3'AG 2186096 Downstream 44bp
chr17 38142927 38142927 1 + G A COAD 38142926 + 38142906 38142946 41 GAAGCCTATCTCCAACTCCTCGTGGTCATCTTCATGATGAA GAAGCCTATCTCCAACTCCTCATGGTCATCTTCATGATGAA < 41bp 1 0.331353034285213 1 0.0825774073600769 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38142926 chr17:38142927 nonsynonymous SNV 0.782 1 22 hm5C_associated_SNPs_19228 0 0 1 0 2 PSMD3 chr17:38142828 3'AG 38142828 Downstream 100bp
chr17 38142927 38142927 1 + G A COAD 38142926 + 38142906 38142946 41 GAAGCCTATCTCCAACTCCTCGTGGTCATCTTCATGATGAA GAAGCCTATCTCCAACTCCTCATGGTCATCTTCATGATGAA < 41bp 1 0.331353034285213 1 0.0825774073600769 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38142926 chr17:38142927 nonsynonymous SNV 0.782 1 22 hm5C_associated_SNPs_19228 0 0 1 0 2 PSMD3 chr17:38142965 5'GT 38142965 Upstream 39bp
chr19 30499995 30499995 1 + C T COAD 30500003 + 30499983 30500023 41 CAAATGTGAATGCGATGCATCAAGTAACAGACTCTCATACT CAAATGTGAATGTGATGCATCAAGTAACAGACTCTCATACT < 41bp 1 0.524228726853102 1 0.191622018814087 experiment 0.951542546293797 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control URI1 ENSG00000105176 CDS Human protein_coding chr19:30500003 chr19:30499995 nonsynonymous SNV 0.003 0 13 hm5C_associated_SNPs_19229 0 0 1 0 1 URI1 chr19:30499912 3'AG 30499912 Downstream 84bp
chr19 18968311 18968311 1 + C T COAD 18968319 + 18968299 18968339 41 CAACATCTTCTACGAGGGCTCCCTCCAGAATGGTGTCACTG CAACATCTTCTATGAGGGCTCCCTCCAGAATGGTGTCACTG < 41bp 1 0.0265102096739236 1 0.0556504726409912 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18968319 chr19:18968311 synonymous SNV . 0 13 hm5C_associated_SNPs_19230 0 0 1 0 1 UPF1 chr19:18968342 5'GT 18968342 Upstream 32bp
chr6 32134500 32134500 1 + C T COAD 32134481 + 32134461 32134501 41 CGGGCGCTGTGTTCCAGGACCATGTACCGCGTTATGTGGCG CGGGCGCTGTGTTCCAGGACCATGTACCGCGTTATGTGGTG < 41bp 1 0.197577943611863 1 0.125144213438034 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134481 chr6:32134500 nonsynonymous SNV 0.937 3 40 hm5C_associated_SNPs_19231 0 0 1 0 2 EGFL8 chr6:32134478 3'AG 32134478 Downstream 23bp
chr6 32134500 32134500 1 + C T COAD 32134481 + 32134461 32134501 41 CGGGCGCTGTGTTCCAGGACCATGTACCGCGTTATGTGGCG CGGGCGCTGTGTTCCAGGACCATGTACCGCGTTATGTGGTG < 41bp 1 0.197577943611863 1 0.125144213438034 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134481 chr6:32134500 nonsynonymous SNV 0.937 3 40 hm5C_associated_SNPs_19231 0 0 1 0 2 EGFL8 chr6:32134587 5'GT 32134587 Upstream 88bp
chr19 41811655 41811655 1 + A T COAD 41811651 + 41811631 41811671 41 CACAGCCCCACCGCCTCCACCTCCACCACCACCTGCCTACA CACAGCCCCACCGCCTCCACCTCCTCCACCACCTGCCTACA < 41bp 1 0.295122896833052 1 0.264297634363174 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41811651 chr19:41811655 synonymous SNV 0.962 0 25 hm5C_associated_SNPs_19232 0 0 1 0 1 HNRNPUL1 chr19:41811581 3'AG 41811581 Downstream 75bp
chr11 73078717 73078717 1 + T C COAD 73078714 + 73078694 73078734 41 AGGCCTAAAATGCTGGTTATCAGTGGAGGTGATGGCTATGA AGGCCTAAAATGCTGGTTATCAGCGGAGGTGATGGCTATGA < 41bp 1 0.62808101794672 1 0.796654880046844 experiment 0.743837964106561 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73078714 chr11:73078717 synonymous SNV . 0 24 hm5C_associated_SNPs_19233 0 0 0 0 1 ARHGEF17 chr11:73078629 3'AG 73078629 Downstream 89bp
chr12 31242070 31242070 1 + C T COAD 31242078 + 31242058 31242098 41 TCGGCTGGTCTCCCTTGGCTCCCGGCAGGTAAACAGTAGCC TCGGCTGGTCTCTCTTGGCTCCCGGCAGGTAAACAGTAGCC < 41bp 1 0.453747566943936 1 0.233781278133392 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31242078 chr12:31242070 synonymous SNV . 0 13 hm5C_associated_SNPs_19234 0 0 1 0 1 DDX11 chr12:31242085 5'GT 31242085 Upstream 16bp
chr2 167108302 167108302 1 - C T COAD 167108313 - 167108293 167108333 41 AGAAGAAGCAGAGGCTGAACCTATGAATTCCGATGAGCCAG AGAAGAAGCAGAGGCTGAACCTATGAATTCCAATGAGCCAG < 41bp 1 0.405400920038072 1 0.538301408290863 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SCN9A ENSG00000169432 CDS Human protein_coding chr2:167108313 chr2:167108302 nonsynonymous SNV 0.978 2 32 hm5C_associated_SNPs_19236 0 0 1 0 2 SCN9A chr2:167108275 5'GT 167108275 Upstream 28bp
chr2 167108302 167108302 1 - C T COAD 167108313 - 167108293 167108333 41 AGAAGAAGCAGAGGCTGAACCTATGAATTCCGATGAGCCAG AGAAGAAGCAGAGGCTGAACCTATGAATTCCAATGAGCCAG < 41bp 1 0.405400920038072 1 0.538301408290863 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SCN9A ENSG00000169432 CDS Human protein_coding chr2:167108313 chr2:167108302 nonsynonymous SNV 0.978 2 32 hm5C_associated_SNPs_19236 0 0 1 0 2 SCN9A chr2:167108395 3'AG 167108395 Downstream 94bp
chr19 58757774 58757774 1 + G T COAD 58757778 + 58757758 58757798 41 TGACACTGGAGACCTGGGAGCATATTGTCTCCCTGGGTAAG TGACACTGGAGACCTGTGAGCATATTGTCTCCCTGGGTAAG < 41bp 1 0.261688994448973 1 0.0678814947605133 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58757778 chr19:58757774 nonsynonymous SNV 0.062 0 17 hm5C_associated_SNPs_19237 0 0 1 0 1 ZNF544 chr19:58757793 5'GT 58757793 Upstream 20bp
chr17 41570084 41570084 1 + G A COAD 41570095 + 41570075 41570115 41 GTCGAAGCCGAGATCGAAACCGAGATCGAGACAGAGATAGG GTCGAAGCCAAGATCGAAACCGAGATCGAGACAGAGATAGG < 41bp 1 0.782407624530167 1 0.79532778263092 experiment 0.435184750939666 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41570095 chr17:41570084 nonsynonymous SNV 0.979 0 10 hm5C_associated_SNPs_19243 0 0 1 0 1 DHX8 chr17:41570049 3'AG 41570049 Downstream 36bp
chr10 73562768 73562768 1 + G T COAD 73562773 + 73562753 73562793 41 GGTCATCACCATGATGGCCACTGACCAGGATGAAGGTCCCA GGTCATCACCATGATTGCCACTGACCAGGATGAAGGTCCCA < 41bp 1 0.0900488315403909 1 0.0591524839401245 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH23 ENSG00000107736 CDS Human protein_coding chr10:73562773 chr10:73562768 nonsynonymous SNV 1.000 0 16 hm5C_associated_SNPs_19244 0 0 0 0 1 CDH23 chr10:73562832 5'GT 73562832 Upstream 65bp
chr16 57787128 57787128 1 + C A COAD 57787133 + 57787113 57787153 41 CCAACCCCAGCGCCCCCCTCCGGCGCATCTATGAGCGGCCC CCAACCCCAGCGCCCACCTCCGGCGCATCTATGAGCGGCCC < 41bp 1 0.648698661847295 1 0.78538191318512 experiment 0.702602676305409 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57787133 chr16:57787128 nonsynonymous SNV 0.003 1 16 hm5C_associated_SNPs_19245 0 0 0 0 1 KATNB1 chr16:57787179 5'GT 57787179 Upstream 52bp
chr16 1411904 1411904 1 + G A COAD 1411910 + 1411890 1411930 41 GCCCGTTCCACAACGTGACCCAGCACGAGCAGACCTTCCGC GCCCGTTCCACAACATGACCCAGCACGAGCAGACCTTCCGC < 41bp 1 0.794104761981283 1 0.801838874816895 experiment 0.411790476037433 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GNPTG ENSG00000090581 CDS Human protein_coding chr16:1411910 chr16:1411904 nonsynonymous SNV 0.992 5 15 hm5C_associated_SNPs_19246 0 0 1 0 2 GNPTG chr16:1411873 3'AG 1411873 Downstream 32bp
chr16 1411904 1411904 1 + G A COAD 1411910 + 1411890 1411930 41 GCCCGTTCCACAACGTGACCCAGCACGAGCAGACCTTCCGC GCCCGTTCCACAACATGACCCAGCACGAGCAGACCTTCCGC < 41bp 1 0.794104761981283 1 0.801838874816895 experiment 0.411790476037433 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GNPTG ENSG00000090581 CDS Human protein_coding chr16:1411910 chr16:1411904 nonsynonymous SNV 0.992 5 15 hm5C_associated_SNPs_19246 0 0 1 0 2 GNPTG chr16:1411956 5'GT 1411956 Upstream 53bp
chr1 879180 879180 1 + C T COAD 879184 + 879164 879204 41 GCCCGCCCTCAAGATCCGGGCCCAGGTGAGACGCTGGGGAG GCCCGCCCTCAAGATCTGGGCCCAGGTGAGACGCTGGGGAG < 41bp 1 0.490429591833839 1 0.315983176231384 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879184 chr1:879180 nonsynonymous SNV 0.663 4 17 hm5C_associated_SNPs_19247 0 0 0 0 1 SAMD11 chr1:879188 5'GT 879188 Upstream 9bp
chr1 879180 879180 1 + C T COAD 879185 + 879165 879205 41 CCCGCCCTCAAGATCCGGGCCCAGGTGAGACGCTGGGGAGT CCCGCCCTCAAGATCTGGGCCCAGGTGAGACGCTGGGGAGT < 41bp 1 0.421649786831178 1 0.407609075307846 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879185 chr1:879180 nonsynonymous SNV 0.663 4 16 hm5C_associated_SNPs_19248 0 0 0 0 1 SAMD11 chr1:879188 5'GT 879188 Upstream 9bp
chr1 879180 879180 1 + C T COAD 879186 + 879166 879206 41 CCGCCCTCAAGATCCGGGCCCAGGTGAGACGCTGGGGAGTG CCGCCCTCAAGATCTGGGCCCAGGTGAGACGCTGGGGAGTG < 41bp 1 0.630530427990771 1 0.455974191427231 experiment 0.738939144018459 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879186 chr1:879180 nonsynonymous SNV 0.663 4 15 hm5C_associated_SNPs_19249 0 0 0 0 1 SAMD11 chr1:879188 5'GT 879188 Upstream 9bp
chr4 126337744 126337744 1 + C T COAD 126337729 + 126337709 126337749 41 GAGTAACACAGAGTCTGGATCGGGAAACAAAAGAGCGCTTT GAGTAACACAGAGTCTGGATCGGGAAACAAAAGAGTGCTTT < 41bp 1 0.578926114031173 1 0.931861579418182 experiment 0.842147771937654 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126337729 chr4:126337744 nonsynonymous SNV 0.003 2 36 hm5C_associated_SNPs_19250 0 0 0 0 1 FAT4 chr4:126337777 5'GT 126337777 Upstream 34bp
chr11 67818115 67818115 1 + G A COAD 67818104 + 67818084 67818124 41 GGTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGC GGTGATGGAGGGACTCTCAGCCTTCCTGCACACCCTGCGGC < 41bp 1 0.0378584397788592 1 0.485622823238373 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818104 chr11:67818115 nonsynonymous SNV 0.983 3 32 hm5C_associated_SNPs_19255 0 0 1 0 2 TCIRG1 chr11:67818131 5'GT 67818131 Upstream 17bp
chr11 67818115 67818115 1 + G A COAD 67818104 + 67818084 67818124 41 GGTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGC GGTGATGGAGGGACTCTCAGCCTTCCTGCACACCCTGCGGC < 41bp 1 0.0378584397788592 1 0.485622823238373 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818104 chr11:67818115 nonsynonymous SNV 0.983 3 32 hm5C_associated_SNPs_19255 0 0 1 0 2 TCIRG1 chr11:67818208 5'GT 67818208 Upstream 94bp
chr11 67818115 67818115 1 + G A COAD 67818105 + 67818085 67818125 41 GTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGCT GTGATGGAGGGACTCTCAGCCTTCCTGCACACCCTGCGGCT < 41bp 1 0.152499267930062 1 0.614853620529175 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818105 chr11:67818115 nonsynonymous SNV 0.983 3 31 hm5C_associated_SNPs_19256 0 0 1 0 2 TCIRG1 chr11:67818131 5'GT 67818131 Upstream 17bp
chr11 67818115 67818115 1 + G A COAD 67818105 + 67818085 67818125 41 GTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGCT GTGATGGAGGGACTCTCAGCCTTCCTGCACACCCTGCGGCT < 41bp 1 0.152499267930062 1 0.614853620529175 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818105 chr11:67818115 nonsynonymous SNV 0.983 3 31 hm5C_associated_SNPs_19256 0 0 1 0 2 TCIRG1 chr11:67818208 5'GT 67818208 Upstream 94bp
chr1 7796527 7796527 1 + C T COAD 7796544 + 7796524 7796564 41 TTCCGCGGAATGACCCTACTCCACCTGGCCGCTGCCCAGGG TTCTGCGGAATGACCCTACTCCACCTGGCCGCTGCCCAGGG < 41bp 1 0.27928224566241 1 0.239354640245438 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMTA1 ENSG00000171735 CDS Human protein_coding chr1:7796544 chr1:7796527 nonsynonymous SNV 0.928 4 4 hm5C_associated_SNPs_19257 0 0 1 0 1 CAMTA1 chr1:7796600 5'GT 7796600 Upstream 74bp
chr11 111575828 111575828 1 + C T COAD 111575822 + 111575802 111575842 41 AGCAGAGACTTGATGGCCGCCAGCGTCGGCCTAGCACCATT AGCAGAGACTTGATGGCCGCCAGCGTTGGCCTAGCACCATT < 41bp 1 0.658386614432233 1 0.606493890285492 experiment 0.683226771135534 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control SIK2 ENSG00000170145 CDS Human protein_coding chr11:111575822 chr11:111575828 nonsynonymous SNV 0.983 4 27 hm5C_associated_SNPs_19258 0 0 0 0 1 SIK2 chr11:111575863 5'GT 111575863 Upstream 36bp
chr19 19646176 19646176 1 + C T COAD 19646174 + 19646154 19646194 41 ACCCACCATCTTCTACCCCACACGCTCGCTGGACCTGCTGC ACCCACCATCTTCTACCCCACATGCTCGCTGGACCTGCTGC < 41bp 1 0.139719786073222 1 0.043874204158783 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control YJEFN3 ENSG00000250067;ENSG00000258674 CDS Human other chr19:19646174 chr19:19646176 nonsynonymous SNV 0.037 4 23 hm5C_associated_SNPs_19259 0 0 1 0 2 YJEFN3 chr19:19646146 3'AG 19646146 Downstream 31bp
chr19 19646176 19646176 1 + C T COAD 19646174 + 19646154 19646194 41 ACCCACCATCTTCTACCCCACACGCTCGCTGGACCTGCTGC ACCCACCATCTTCTACCCCACATGCTCGCTGGACCTGCTGC < 41bp 1 0.139719786073222 1 0.043874204158783 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control YJEFN3 ENSG00000250067;ENSG00000258674 CDS Human other chr19:19646174 chr19:19646176 nonsynonymous SNV 0.037 4 23 hm5C_associated_SNPs_19259 0 0 1 0 2 YJEFN3 chr19:19646259 5'GT 19646259 Upstream 84bp
chr11 86947694 86947694 1 + C T COAD 86947706 + 86947686 86947726 41 TTGTTTTGCATCACAGCTGCCATGTACATGTTCTTTTTCAG TTGTTTTGTATCACAGCTGCCATGTACATGTTCTTTTTCAG < 41bp 1 0.0525744090773568 1 0.0397069156169891 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM135 ENSG00000166575 CDS Human protein_coding chr11:86947706 chr11:86947694 synonymous SNV . 0 9 hm5C_associated_SNPs_19260 0 0 1 0 2 TMEM135 chr11:86947680 3'AG 86947680 Downstream 15bp
chr11 86947694 86947694 1 + C T COAD 86947706 + 86947686 86947726 41 TTGTTTTGCATCACAGCTGCCATGTACATGTTCTTTTTCAG TTGTTTTGTATCACAGCTGCCATGTACATGTTCTTTTTCAG < 41bp 1 0.0525744090773568 1 0.0397069156169891 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM135 ENSG00000166575 CDS Human protein_coding chr11:86947706 chr11:86947694 synonymous SNV . 0 9 hm5C_associated_SNPs_19260 0 0 1 0 2 TMEM135 chr11:86947726 5'GT 86947726 Upstream 33bp
chr6 13616700 13616700 1 + A G COAD 13616704 + 13616684 13616724 41 CATTCCAAAAGAAAAGAAAACTCCTTCCAGACACTATTTTG CATTCCAAAAGAAAAGGAAACTCCTTCCAGACACTATTTTG < 41bp 1 0.317464542991144 1 0.104735612869263 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOL7 ENSG00000225921 CDS Human protein_coding chr6:13616704 chr6:13616700 synonymous SNV . 0 17 hm5C_associated_SNPs_19264 0 0 1 0 2 NOL7 chr6:13616695 3'AG 13616695 Downstream 6bp
chr6 13616700 13616700 1 + A G COAD 13616704 + 13616684 13616724 41 CATTCCAAAAGAAAAGAAAACTCCTTCCAGACACTATTTTG CATTCCAAAAGAAAAGGAAACTCCTTCCAGACACTATTTTG < 41bp 1 0.317464542991144 1 0.104735612869263 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOL7 ENSG00000225921 CDS Human protein_coding chr6:13616704 chr6:13616700 synonymous SNV . 0 17 hm5C_associated_SNPs_19264 0 0 1 0 2 NOL7 chr6:13616753 5'GT 13616753 Upstream 54bp
chr1 155106006 155106006 1 + G T COAD 155106004 + 155105984 155106024 41 CCCATCCACCAGCATGAAGACCGCTGCTTGAGGTTGAAGGT CCCATCCACCAGCATGAAGACCTCTGCTTGAGGTTGAAGGT < 41bp 1 0.0518522286365555 1 0.106829732656479 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNA1 ENSG00000169242 CDS Human protein_coding chr1:155106004 chr1:155106006 nonsynonymous SNV 0.866 2 23 hm5C_associated_SNPs_19266 0 0 1 0 2 EFNA1 chr1:155105979 3'AG 155105979 Downstream 28bp
chr1 155106006 155106006 1 + G T COAD 155106004 + 155105984 155106024 41 CCCATCCACCAGCATGAAGACCGCTGCTTGAGGTTGAAGGT CCCATCCACCAGCATGAAGACCTCTGCTTGAGGTTGAAGGT < 41bp 1 0.0518522286365555 1 0.106829732656479 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNA1 ENSG00000169242 CDS Human protein_coding chr1:155106004 chr1:155106006 nonsynonymous SNV 0.866 2 23 hm5C_associated_SNPs_19266 0 0 1 0 2 EFNA1 chr1:155106044 5'GT 155106044 Upstream 39bp
chr10 75871773 75871773 1 + C G COAD 75871762 + 75871742 75871782 41 GTCCCCCCTGACATGGAAGACGATTACGAACCTGAGCTGCT GTCCCCCCTGACATGGAAGACGATTACGAACGTGAGCTGCT < 41bp 1 0.0978466366300264 1 0.143677294254303 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75871762 chr10:75871773 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_19267 1 0 1 0 1 VCL chr10:75871870 5'GT 75871870 Upstream 98bp
chr8 56864609 56864609 1 + G T COAD 56864624 + 56864604 56864644 41 TAATGGGGGCTATTACATCTCTCCACGAATCACTTTTCCCT TAATGTGGGCTATTACATCTCTCCACGAATCACTTTTCCCT < 41bp 1 0.712168339248166 1 0.93351674079895 experiment 0.575663321503669 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56864624 chr8:56864609 nonsynonymous SNV 0.995 4 6 hm5C_associated_SNPs_19272 0 0 1 0 2 LYN chr8:56864525 3'AG 56864525 Downstream 85bp
chr8 56864609 56864609 1 + G T COAD 56864624 + 56864604 56864644 41 TAATGGGGGCTATTACATCTCTCCACGAATCACTTTTCCCT TAATGTGGGCTATTACATCTCTCCACGAATCACTTTTCCCT < 41bp 1 0.712168339248166 1 0.93351674079895 experiment 0.575663321503669 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56864624 chr8:56864609 nonsynonymous SNV 0.995 4 6 hm5C_associated_SNPs_19272 0 0 1 0 2 LYN chr8:56864674 5'GT 56864674 Upstream 66bp
chr9 131218469 131218469 1 + G A COAD 131218480 + 131218460 131218500 41 CCATGGCACGACCCTGGCCTCCGACTTCAACGACTTCATAA CCATGGCACAACCCTGGCCTCCGACTTCAACGACTTCATAA < 41bp 1 0.207880587727687 1 0.0407792031764984 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ODF2 ENSG00000136811 CDS Human protein_coding chr9:131218480 chr9:131218469 synonymous SNV . 0 10 hm5C_associated_SNPs_19273 0 0 1 0 1 ODF2 chr9:131218534 5'GT 131218534 Upstream 66bp
chr7 98563387 98563387 1 + A G COAD 98563380 + 98563360 98563400 41 ACGCGCCTGGCAGTGATGAGCATGGAGATGCGGAAGAACTT ACGCGCCTGGCAGTGATGAGCATGGAGGTGCGGAAGAACTT < 41bp 1 0.209216952076538 1 0.332551419734955 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98563380 chr7:98563387 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_19276 0 0 1 0 1 TRRAP chr7:98563319 3'AG 98563319 Downstream 69bp
chr3 119198925 119198925 1 + C T COAD 119198909 + 119198889 119198929 41 TTGTTGAAGACATCAGAGTACCATGATATCATGTATCCTGC TTGTTGAAGACATCAGAGTACCATGATATCATGTATTCTGC < 41bp 1 0.389516169959905 1 0.0941370129585266 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119198909 chr3:119198925 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_19277 0 0 0 0 2 POGLUT1 chr3:119198898 3'AG 119198898 Downstream 28bp
chr3 119198925 119198925 1 + C T COAD 119198909 + 119198889 119198929 41 TTGTTGAAGACATCAGAGTACCATGATATCATGTATCCTGC TTGTTGAAGACATCAGAGTACCATGATATCATGTATTCTGC < 41bp 1 0.389516169959905 1 0.0941370129585266 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119198909 chr3:119198925 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_19277 0 0 0 0 2 POGLUT1 chr3:119199019 5'GT 119199019 Upstream 95bp
chr16 66976106 66976106 1 + G A COAD 66976124 + 66976104 66976144 41 GCGGACTCCATGTTTGTGATCCCTGCACTCCAAGTAGCACA GCAGACTCCATGTTTGTGATCCCTGCACTCCAAGTAGCACA < 41bp 1 0.0935781720440251 1 0.0307653844356537 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CES2 ENSG00000172831 CDS Human protein_coding chr16:66976124 chr16:66976106 synonymous SNV . 0 3 hm5C_associated_SNPs_19278 0 0 1 0 1 CES2 chr16:66976008 3'AG 66976008 Downstream 99bp
chr11 65396091 65396091 1 + G A COAD 65396110 + 65396090 65396130 41 CGTTTCGTGCTGACCTACATCGCGCCCTGGCAGATCACCTG CATTTCGTGCTGACCTACATCGCGCCCTGGCAGATCACCTG < 41bp 1 0.458768486526883 1 0.665815472602844 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65396110 chr11:65396091 nonsynonymous SNV 0.960 3 2 hm5C_associated_SNPs_19279 0 0 1 0 2 PCNX3 chr11:65396066 3'AG 65396066 Downstream 26bp
chr11 65396091 65396091 1 + G A COAD 65396110 + 65396090 65396130 41 CGTTTCGTGCTGACCTACATCGCGCCCTGGCAGATCACCTG CATTTCGTGCTGACCTACATCGCGCCCTGGCAGATCACCTG < 41bp 1 0.458768486526883 1 0.665815472602844 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65396110 chr11:65396091 nonsynonymous SNV 0.960 3 2 hm5C_associated_SNPs_19279 0 0 1 0 2 PCNX3 chr11:65396174 5'GT 65396174 Upstream 84bp
chr10 93695423 93695423 1 + C T COAD 93695421 + 93695401 93695441 41 TTTGTTATTTCAGGCTAGATCGCCTTTTTATTTTACTGGAT TTTGTTATTTCAGGCTAGATCGTCTTTTTATTTTACTGGAT < 41bp 1 0.20380251012319 1 0.292532444000244 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93695421 chr10:93695423 synonymous SNV . 0 23 hm5C_associated_SNPs_19282 0 0 1 0 1 BTAF1 chr10:93695414 3'AG 93695414 Downstream 10bp
chr1 171759661 171759661 1 + C T COAD 171759671 + 171759651 171759691 41 CCTGCAGCCCCGGGGCAGTCCATTGATAAGAGTTACCTGTG CCTGCAGCCCTGGGGCAGTCCATTGATAAGAGTTACCTGTG < 41bp 1 0.319687816510331 1 0.0561214089393616 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171759671 chr1:171759661 nonsynonymous SNV 0.533 1 11 hm5C_associated_SNPs_19284 0 0 0 0 2 METTL13 chr1:171759592 3'AG 171759592 Downstream 70bp
chr1 171759661 171759661 1 + C T COAD 171759671 + 171759651 171759691 41 CCTGCAGCCCCGGGGCAGTCCATTGATAAGAGTTACCTGTG CCTGCAGCCCTGGGGCAGTCCATTGATAAGAGTTACCTGTG < 41bp 1 0.319687816510331 1 0.0561214089393616 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171759671 chr1:171759661 nonsynonymous SNV 0.533 1 11 hm5C_associated_SNPs_19284 0 0 0 0 2 METTL13 chr1:171759756 5'GT 171759756 Upstream 96bp
chr3 169953102 169953102 1 + C T COAD 169953106 + 169953086 169953126 41 TGTGTTCTTTTGACAACGAACAGCTCTTCACCATGAAATGG TGTGTTCTTTTGACAATGAACAGCTCTTCACCATGAAATGG < 41bp 1 0.496889650156844 1 0.0670566260814667 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:169953106 chr3:169953102 synonymous SNV . 0 17 hm5C_associated_SNPs_19286 0 0 1 0 2 PRKCI chr3:169953018 3'AG 169953018 Downstream 85bp
chr3 169953102 169953102 1 + C T COAD 169953106 + 169953086 169953126 41 TGTGTTCTTTTGACAACGAACAGCTCTTCACCATGAAATGG TGTGTTCTTTTGACAATGAACAGCTCTTCACCATGAAATGG < 41bp 1 0.496889650156844 1 0.0670566260814667 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:169953106 chr3:169953102 synonymous SNV . 0 17 hm5C_associated_SNPs_19286 0 0 1 0 2 PRKCI chr3:169953139 5'GT 169953139 Upstream 38bp
chr21 47842021 47842021 1 + C T COAD 47842001 + 47841981 47842021 41 GTTTCAGCCGCTGCCGGAAGCCATGAAGGAGAAGGAAGTGC GTTTCAGCCGCTGCCGGAAGCCATGAAGGAGAAGGAAGTGT < 41bp 1 0.0476674001819257 1 0.396171808242798 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47842001 chr21:47842021 nonsynonymous SNV 0.003 0 41 hm5C_associated_SNPs_19289 1 0 1 0 1 PCNT chr21:47842038 5'GT 47842038 Upstream 18bp
chr21 47769622 47769622 1 + A G COAD 47769611 + 47769591 47769631 41 TTTCTAGGGGCCCTTAGGAACCTGGAGAGTCATCATCAAGC TTTCTAGGGGCCCTTAGGAACCTGGAGAGTCGTCATCAAGC < 41bp 1 0.0756302259937096 1 0.162389099597931 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47769611 chr21:47769622 nonsynonymous SNV 0.008 1 32 hm5C_associated_SNPs_19290 0 0 1 0 1 PCNT chr21:47769598 3'AG 47769598 Downstream 25bp
chr19 33581726 33581726 1 + A G COAD 33581723 + 33581703 33581743 41 TTTGTGTCTTCACGACAGAACAGAGCAGACAAATCTGTTCT TTTGTGTCTTCACGACAGAACAGGGCAGACAAATCTGTTCT < 41bp 1 0.643162758624754 1 0.797497391700745 experiment 0.713674482750493 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33581723 chr19:33581726 synonymous SNV . 0 24 hm5C_associated_SNPs_19291 0 0 1 0 2 GPATCH1 chr19:33581686 3'AG 33581686 Downstream 41bp
chr19 33581726 33581726 1 + A G COAD 33581723 + 33581703 33581743 41 TTTGTGTCTTCACGACAGAACAGAGCAGACAAATCTGTTCT TTTGTGTCTTCACGACAGAACAGGGCAGACAAATCTGTTCT < 41bp 1 0.643162758624754 1 0.797497391700745 experiment 0.713674482750493 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33581723 chr19:33581726 synonymous SNV . 0 24 hm5C_associated_SNPs_19291 0 0 1 0 2 GPATCH1 chr19:33581771 5'GT 33581771 Upstream 46bp
chrX 133511666 133511666 1 + C T COAD 133511658 + 133511638 133511678 41 TTTAAAAATCATGTCAAGCTCAGTTGAACAGAAAAAAGGGC TTTAAAAATCATGTCAAGCTCAGTTGAATAGAAAAAAGGGC < 41bp 1 0.222060621855524 1 0.398138523101807 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHF6 ENSG00000156531 CDS Human protein_coding chrX:133511658 chrX:133511666 stopgain 1.000 1 29 hm5C_associated_SNPs_19292 0 0 1 0 1 PHF6 chrX:133511602 3'AG 133511602 Downstream 65bp
chr12 101674933 101674933 1 + G A COAD 101674915 + 101674895 101674935 41 TTCTTACATTTGCTGAACGACTGGGGAATGTTAATATTGAT TTCTTACATTTGCTGAACGACTGGGGAATGTTAATATTAAT < 41bp 1 0.332971241450965 1 0.335434317588806 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101674915 chr12:101674933 nonsynonymous SNV 0.999 3 39 hm5C_associated_SNPs_19293 0 0 1 0 2 UTP20 chr12:101674894 3'AG 101674894 Downstream 40bp
chr12 101674933 101674933 1 + G A COAD 101674915 + 101674895 101674935 41 TTCTTACATTTGCTGAACGACTGGGGAATGTTAATATTGAT TTCTTACATTTGCTGAACGACTGGGGAATGTTAATATTAAT < 41bp 1 0.332971241450965 1 0.335434317588806 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101674915 chr12:101674933 nonsynonymous SNV 0.999 3 39 hm5C_associated_SNPs_19293 0 0 1 0 2 UTP20 chr12:101674974 5'GT 101674974 Upstream 42bp
chr19 4013016 4013016 1 + G T COAD 4013020 + 4013000 4013040 41 ACGAGCTCGTCACCAGGGCCCTCCAGCTGGTGCAGTTTGAC ACGAGCTCGTCACCAGTGCCCTCCAGCTGGTGCAGTTTGAC < 41bp 1 0.606043355830389 1 0.739099144935608 experiment 0.787913288339222 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PIAS4 ENSG00000105229 CDS Human protein_coding chr19:4013020 chr19:4013016 nonsynonymous SNV 0.973 4 17 hm5C_associated_SNPs_19294 0 0 1 0 1 PIAS4 chr19:4012921 3'AG 4012921 Downstream 96bp
chr10 103291065 103291065 1 + A G COAD 103291084 + 103291064 103291104 41 TATCCTAAAATTATACAAGACATTGAGGTAAGAATCTATGT TGTCCTAAAATTATACAAGACATTGAGGTAAGAATCTATGT < 41bp 1 0.061760218422982 1 0.0174383223056793 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BTRC ENSG00000166167 CDS Human protein_coding chr10:103291084 chr10:103291065 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_19295 0 0 1 0 2 BTRC chr10:103290994 3'AG 103290994 Downstream 72bp
chr10 103291065 103291065 1 + A G COAD 103291084 + 103291064 103291104 41 TATCCTAAAATTATACAAGACATTGAGGTAAGAATCTATGT TGTCCTAAAATTATACAAGACATTGAGGTAAGAATCTATGT < 41bp 1 0.061760218422982 1 0.0174383223056793 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BTRC ENSG00000166167 CDS Human protein_coding chr10:103291084 chr10:103291065 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_19295 0 0 1 0 2 BTRC chr10:103291090 5'GT 103291090 Upstream 26bp
chr19 54967154 54967154 1 + G A COAD 54967152 + 54967132 54967172 41 TGCTGTATTCTCAGGCTGACCCGGGAGCCTGTGGCTGAGAG TGCTGTATTCTCAGGCTGACCCAGGAGCCTGTGGCTGAGAG < 41bp 1 0.35064688931904 1 0.485144704580307 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54967152 chr19:54967154 nonsynonymous SNV 0.985 0 23 hm5C_associated_SNPs_19296 0 0 1 0 1 LENG8 chr19:54967146 3'AG 54967146 Downstream 9bp
chr9 33026975 33026975 1 + G C COAD 33026973 + 33026953 33026993 41 TTGGAGGAGGAGGAAGGATGCAGAGAGAAAGGAGAGGTAAG TTGGAGGAGGAGGAAGGATGCACAGAGAAAGGAGAGGTAAG < 41bp 1 0.596726564341537 1 0.522157967090607 experiment 0.806546871316927 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DNAJA1 ENSG00000086061 CDS Human protein_coding chr9:33026973 chr9:33026975 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_19299 0 0 1 0 1 DNAJA1 chr9:33026988 5'GT 33026988 Upstream 14bp
chr1 27088712 27088712 1 + G A COAD 27088714 + 27088694 27088734 41 GCTCAGCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA GCTCAGCCTTATCTCCGCATCAGCCTTCCGGAGGACAGATA < 41bp 1 0.282542203813245 1 0.0762328207492828 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27088714 chr1:27088712 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_19300 0 0 1 0 2 ARID1A chr1:27088643 3'AG 27088643 Downstream 70bp
chr1 27088712 27088712 1 + G A COAD 27088714 + 27088694 27088734 41 GCTCAGCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA GCTCAGCCTTATCTCCGCATCAGCCTTCCGGAGGACAGATA < 41bp 1 0.282542203813245 1 0.0762328207492828 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27088714 chr1:27088712 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_19300 0 0 1 0 2 ARID1A chr1:27088810 5'GT 27088810 Upstream 99bp
chr11 107917094 107917094 1 + G A COAD 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGTTTATTAAGCAAGCACAGACAGTAAGTTCTACATGC < 41bp 1 0.223632520608126 1 0.2604740858078 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917094 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_19301 0 0 1 1 2 CUL5 chr11:107916997 3'AG 107916997 Downstream 98bp
chr11 107917094 107917094 1 + G A COAD 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGTTTATTAAGCAAGCACAGACAGTAAGTTCTACATGC < 41bp 1 0.223632520608126 1 0.2604740858078 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917094 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_19301 0 0 1 1 2 CUL5 chr11:107917096 5'GT 107917096 Upstream 3bp
chr19 17887061 17887061 1 + C T COAD 17887060 + 17887040 17887080 41 CCCACTTTGTCCACAGGGCACCATGAAACGCCATTCTTCAC CCCACTTTGTCCACAGGGCACTATGAAACGCCATTCTTCAC < 41bp 1 0.158537138081199 1 0.0288088917732239 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17887060 chr19:17887061 synonymous SNV . 0 22 hm5C_associated_SNPs_19302 0 0 1 0 2 FCHO1 chr19:17887056 3'AG 17887056 Downstream 6bp
chr19 17887061 17887061 1 + C T COAD 17887060 + 17887040 17887080 41 CCCACTTTGTCCACAGGGCACCATGAAACGCCATTCTTCAC CCCACTTTGTCCACAGGGCACTATGAAACGCCATTCTTCAC < 41bp 1 0.158537138081199 1 0.0288088917732239 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17887060 chr19:17887061 synonymous SNV . 0 22 hm5C_associated_SNPs_19302 0 0 1 0 2 FCHO1 chr19:17887080 5'GT 17887080 Upstream 20bp
chr20 47707365 47707365 1 + G A COAD 47707353 + 47707333 47707373 41 CAAGGTTTTTATCTTCTAAACAGTATAATAGAGCACATGCC CAAGGTTTTTATCTTCTAAACAGTATAATAGAACACATGCC < 41bp 1 0.437245203487189 1 0.530844986438751 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CSE1L ENSG00000124207 CDS Human protein_coding chr20:47707353 chr20:47707365 synonymous SNV . 0 33 hm5C_associated_SNPs_19303 0 0 1 0 2 CSE1L chr20:47707279 3'AG 47707279 Downstream 87bp
chr20 47707365 47707365 1 + G A COAD 47707353 + 47707333 47707373 41 CAAGGTTTTTATCTTCTAAACAGTATAATAGAGCACATGCC CAAGGTTTTTATCTTCTAAACAGTATAATAGAACACATGCC < 41bp 1 0.437245203487189 1 0.530844986438751 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CSE1L ENSG00000124207 CDS Human protein_coding chr20:47707353 chr20:47707365 synonymous SNV . 0 33 hm5C_associated_SNPs_19303 0 0 1 0 2 CSE1L chr20:47707376 5'GT 47707376 Upstream 12bp
chr16 29708349 29708349 1 + C T COAD 29708330 + 29708310 29708350 41 CCAGCAGGCGGTGCGGGCGGCCAGACAGGCGGCTGACTTCA CCAGCAGGCGGTGCGGGCGGCCAGACAGGCGGCTGACTTTA < 41bp 1 0.502304673661988 1 0.304864019155502 experiment 0.995390652676024 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29708330 chr16:29708349 synonymous SNV . 0 40 hm5C_associated_SNPs_19304 0 0 1 0 2 QPRT chr16:29708317 3'AG 29708317 Downstream 33bp
chr16 29708349 29708349 1 + C T COAD 29708330 + 29708310 29708350 41 CCAGCAGGCGGTGCGGGCGGCCAGACAGGCGGCTGACTTCA CCAGCAGGCGGTGCGGGCGGCCAGACAGGCGGCTGACTTTA < 41bp 1 0.502304673661988 1 0.304864019155502 experiment 0.995390652676024 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29708330 chr16:29708349 synonymous SNV . 0 40 hm5C_associated_SNPs_19304 0 0 1 0 2 QPRT chr16:29708448 5'GT 29708448 Upstream 100bp
chr5 10387137 10387137 1 + C T COAD 10387150 + 10387130 10387170 41 CTGGCTCCGTGAGCTCACTACTGACGCTGCCATTAGATATG CTGGCTCTGTGAGCTCACTACTGACGCTGCCATTAGATATG < 41bp 1 0.294496913195178 1 0.0984874665737152 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10387150 chr5:10387137 synonymous SNV . 0 8 hm5C_associated_SNPs_19306 0 0 1 0 2 MARCH6 chr5:10387106 3'AG 10387106 Downstream 32bp
chr5 10387137 10387137 1 + C T COAD 10387150 + 10387130 10387170 41 CTGGCTCCGTGAGCTCACTACTGACGCTGCCATTAGATATG CTGGCTCTGTGAGCTCACTACTGACGCTGCCATTAGATATG < 41bp 1 0.294496913195178 1 0.0984874665737152 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10387150 chr5:10387137 synonymous SNV . 0 8 hm5C_associated_SNPs_19306 0 0 1 0 2 MARCH6 chr5:10387178 5'GT 10387178 Upstream 42bp
chr22 50861978 50861978 1 + C A COAD 50861963 + 50861943 50861983 41 CCCGTCTGCATGGCGCCCGCCTCATGGCAGCACTGCTGCAC CCCGTCTGCATGGCGCCCGCCTCATGGCAGCACTGATGCAC < 41bp 1 0.427623373866137 1 0.145799249410629 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50861963 chr22:50861978 nonsynonymous SNV 0.990 3 36 hm5C_associated_SNPs_19307 0 0 1 0 2 PPP6R2 chr22:50861891 3'AG 50861891 Downstream 88bp
chr22 50861978 50861978 1 + C A COAD 50861963 + 50861943 50861983 41 CCCGTCTGCATGGCGCCCGCCTCATGGCAGCACTGCTGCAC CCCGTCTGCATGGCGCCCGCCTCATGGCAGCACTGATGCAC < 41bp 1 0.427623373866137 1 0.145799249410629 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50861963 chr22:50861978 nonsynonymous SNV 0.990 3 36 hm5C_associated_SNPs_19307 0 0 1 0 2 PPP6R2 chr22:50862043 5'GT 50862043 Upstream 66bp
chr7 69064869 69064869 1 + G A COAD 69064849 + 69064829 69064869 41 TCCTCCGCCCCGTCCCGGCCCAGACCCCCGCGGAGGAAGCG TCCTCCGCCCCGTCCCGGCCCAGACCCCCGCGGAGGAAGCA < 41bp 1 0.155738183694645 1 0.0447830259799957 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69064849 chr7:69064869 nonsynonymous SNV 0.998 3 41 hm5C_associated_SNPs_19308 0 0 0 0 1 AUTS2 chr7:69064948 5'GT 69064948 Upstream 80bp
chr16 67319381 67319381 1 + G A COAD 67319380 + 67319360 67319400 41 TCCACTGCCACTTCTTCCTGCGTGAGCTGGAGGCTTGCACC TCCACTGCCACTTCTTCCTGCATGAGCTGGAGGCTTGCACC < 41bp 1 0.361157807254005 1 0.161538153886795 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67319380 chr16:67319381 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_19309 0 0 1 0 1 PLEKHG4 chr16:67319439 5'GT 67319439 Upstream 59bp
chr19 42855641 42855641 1 + C A COAD 42855632 + 42855612 42855652 41 TCTAGCCAGTGCGCCTGGTGCCAGTCCACCCACACCTGCTT TCTAGCCAGTGCGCCTGGTGCCAGTCCACACACACCTGCTT < 41bp 1 0.102240566046612 1 0.167270392179489 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42855632 chr19:42855641 synonymous SNV . 0 30 hm5C_associated_SNPs_19310 0 0 0 0 2 MEGF8 chr19:42855581 3'AG 42855581 Downstream 61bp
chr19 42855641 42855641 1 + C A COAD 42855632 + 42855612 42855652 41 TCTAGCCAGTGCGCCTGGTGCCAGTCCACCCACACCTGCTT TCTAGCCAGTGCGCCTGGTGCCAGTCCACACACACCTGCTT < 41bp 1 0.102240566046612 1 0.167270392179489 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42855632 chr19:42855641 synonymous SNV . 0 30 hm5C_associated_SNPs_19310 0 0 0 0 2 MEGF8 chr19:42855712 5'GT 42855712 Upstream 72bp
chr14 102476268 102476268 1 + C T COAD 102476275 + 102476255 102476295 41 TGAACCCTGGCTACGCGGGCCGGTCTAACCTTCCTGACAAC TGAACCCTGGCTATGCGGGCCGGTCTAACCTTCCTGACAAC < 41bp 1 0.040271529101288 1 0.230808734893799 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102476275 chr14:102476268 synonymous SNV . 0 14 hm5C_associated_SNPs_19311 0 0 1 0 1 DYNC1H1 chr14:102476180 3'AG 102476180 Downstream 89bp
chr4 44680723 44680723 1 + G C COAD 44680704 + 44680684 44680724 41 CGCGCCACGAGCCACTGGGGCCGCGCTTCTGGTGGCCCCGG CGCGCCACGAGCCACTGGGGCCGCGCTTCTGGTGGCCCCCG < 41bp 1 0.694580440032374 1 0.311735689640045 experiment 0.610839119935253 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GUF1 ENSG00000151806 CDS Human protein_coding chr4:44680704 chr4:44680723 synonymous SNV . 0 40 hm5C_associated_SNPs_19312 0 0 0 0 1 GUF1 chr4:44680804 5'GT 44680804 Upstream 82bp
chr4 44680723 44680723 1 + G C COAD 44680719 + 44680699 44680739 41 TGGGGCCGCGCTTCTGGTGGCCCCGGGGCCCCGGTCCGCGC TGGGGCCGCGCTTCTGGTGGCCCCCGGGCCCCGGTCCGCGC < 41bp 1 0.526460410834763 1 0.114087849855423 experiment 0.947079178330474 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GUF1 ENSG00000151806 CDS Human protein_coding chr4:44680719 chr4:44680723 synonymous SNV . 0 25 hm5C_associated_SNPs_19313 0 0 0 0 1 GUF1 chr4:44680804 5'GT 44680804 Upstream 82bp
chr4 44680723 44680723 1 + G C COAD 44680720 + 44680700 44680740 41 GGGGCCGCGCTTCTGGTGGCCCCGGGGCCCCGGTCCGCGCC GGGGCCGCGCTTCTGGTGGCCCCCGGGCCCCGGTCCGCGCC < 41bp 1 0.728341949143892 1 0.622697710990906 experiment 0.543316101712216 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GUF1 ENSG00000151806 CDS Human protein_coding chr4:44680720 chr4:44680723 synonymous SNV . 0 24 hm5C_associated_SNPs_19314 0 0 0 0 1 GUF1 chr4:44680804 5'GT 44680804 Upstream 82bp
chr5 150867568 150867568 1 + G A COAD 150867554 + 150867534 150867574 41 CTCCCTGCAGGCATCTTGGCCATCCTCATCCCCCGCCTGGA CTCCCTGCAGGCATCTTGGCCATCCTCATCCCCCACCTGGA < 41bp 1 0.0766336959881679 1 0.0280804932117462 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150867554 chr5:150867568 nonsynonymous SNV 1.000 0 35 hm5C_associated_SNPs_19315 0 0 0 0 1 SLC36A1 chr5:150867544 3'AG 150867544 Downstream 25bp
chr1 16785425 16785425 1 + G A COAD 16785430 + 16785410 16785450 41 GACTTCTGGGAAGGCGCTCCCTCATCTGGGCCAAAGGAAGG GACTTCTGGGAAGGCACTCCCTCATCTGGGCCAAAGGAAGG < 41bp 1 0.541008932899322 1 0.142171174287796 experiment 0.917982134201356 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16785430 chr1:16785425 synonymous SNV . 0 16 hm5C_associated_SNPs_19316 0 0 1 0 1 NECAP2 chr1:16785337 3'AG 16785337 Downstream 89bp
chr1 22332162 22332162 1 + C A COAD 22332166 + 22332146 22332186 41 TGCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTG TGCCTGCAGGAGGGATATGACCTACCAGGTGGTGTTGGGTG < 41bp 1 0.0799546752657108 1 0.134816557168961 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332166 chr1:22332162 nonsynonymous SNV 0.003 1 17 hm5C_associated_SNPs_19317 0 0 0 0 1 CELA3A chr1:22332155 3'AG 22332155 Downstream 8bp
chr1 22332162 22332162 1 + C A COAD 22332167 + 22332147 22332187 41 GCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTGA GCCTGCAGGAGGGATATGACCTACCAGGTGGTGTTGGGTGA < 41bp 1 0.511253172127235 1 0.0525862276554108 experiment 0.977493655745531 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332167 chr1:22332162 nonsynonymous SNV 0.003 1 16 hm5C_associated_SNPs_19318 0 0 0 0 1 CELA3A chr1:22332155 3'AG 22332155 Downstream 8bp
chr1 22332162 22332162 1 + C A COAD 22332170 + 22332150 22332190 41 TGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTGAGTA TGCAGGAGGGATATGACCTACCAGGTGGTGTTGGGTGAGTA < 41bp 1 0.446792995658333 1 0.373599976301193 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332170 chr1:22332162 nonsynonymous SNV 0.003 1 13 hm5C_associated_SNPs_19319 0 0 0 0 1 CELA3A chr1:22332155 3'AG 22332155 Downstream 8bp
chr12 27835607 27835607 1 + G A COAD 27835622 + 27835602 27835642 41 GGGTTGATGGTCGAATGCTACATTACATGACTGTTGTAAGT GGGTTAATGGTCGAATGCTACATTACATGACTGTTGTAAGT < 41bp 1 0.20798896015511 1 0.176267266273499 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27835622 chr12:27835607 nonsynonymous SNV 0.992 3 6 hm5C_associated_SNPs_19320 0 0 1 0 2 PPFIBP1 chr12:27835548 3'AG 27835548 Downstream 60bp
chr12 27835607 27835607 1 + G A COAD 27835622 + 27835602 27835642 41 GGGTTGATGGTCGAATGCTACATTACATGACTGTTGTAAGT GGGTTAATGGTCGAATGCTACATTACATGACTGTTGTAAGT < 41bp 1 0.20798896015511 1 0.176267266273499 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27835622 chr12:27835607 nonsynonymous SNV 0.992 3 6 hm5C_associated_SNPs_19320 0 0 1 0 2 PPFIBP1 chr12:27835636 5'GT 27835636 Upstream 30bp
chr16 28994545 28994545 1 + C T COAD 28994555 + 28994535 28994575 41 GCTCCACCGCCGAGGCCTTCCAGATCGTGCTGTCCCACCTG GCTCCACCGCTGAGGCCTTCCAGATCGTGCTGTCCCACCTG < 41bp 1 0.645743261940762 1 0.885396242141724 experiment 0.708513476118475 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28994555 chr16:28994545 synonymous SNV . 0 11 hm5C_associated_SNPs_19327 0 0 1 0 2 SPNS1 chr16:28994513 3'AG 28994513 Downstream 33bp
chr16 28994545 28994545 1 + C T COAD 28994555 + 28994535 28994575 41 GCTCCACCGCCGAGGCCTTCCAGATCGTGCTGTCCCACCTG GCTCCACCGCTGAGGCCTTCCAGATCGTGCTGTCCCACCTG < 41bp 1 0.645743261940762 1 0.885396242141724 experiment 0.708513476118475 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28994555 chr16:28994545 synonymous SNV . 0 11 hm5C_associated_SNPs_19327 0 0 1 0 2 SPNS1 chr16:28994611 5'GT 28994611 Upstream 67bp
chr3 25542766 25542766 1 + C G COAD 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACCAGGAATCGATGCGAATACTGTCGACTCCAGAAGTGCTT < 41bp 1 0.288226697520176 1 0.100298523902893 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542766 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_19328 0 0 1 0 2 RARB chr3:25542673 3'AG 25542673 Downstream 94bp
chr3 25542766 25542766 1 + C G COAD 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACCAGGAATCGATGCGAATACTGTCGACTCCAGAAGTGCTT < 41bp 1 0.288226697520176 1 0.100298523902893 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542766 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_19328 0 0 1 0 2 RARB chr3:25542814 5'GT 25542814 Upstream 49bp
chr18 48604706 48604706 1 + G A COAD 48604710 + 48604690 48604730 41 TTTTGTGAAAGGCTGGGGACCGGATTACCCAAGACAGAGCA TTTTGTGAAAGGCTGGAGACCGGATTACCCAAGACAGAGCA < 41bp 1 0.50002800962329 1 0.627629995346069 experiment 0.99994398075342 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48604710 chr18:48604706 nonsynonymous SNV 0.996 5 17 hm5C_associated_SNPs_19329 0 0 1 0 1 SMAD4 chr18:48604626 3'AG 48604626 Downstream 81bp
chr12 7177215 7177215 1 + G A COAD 7177213 + 7177193 7177233 41 ACAGAGGATAATTGGAGGATCCGATGCAGATATTAAAAACT ACAGAGGATAATTGGAGGATCCAATGCAGATATTAAAAACT < 41bp 1 0.0657959418862459 1 0.138580858707428 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C1S ENSG00000182326 CDS Human protein_coding chr12:7177213 chr12:7177215 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_19333 0 0 0 0 1 C1S chr12:7177159 3'AG 7177159 Downstream 57bp
chr7 44747515 44747515 1 + G A COAD 44747498 + 44747478 44747518 41 GTATGCCGGCCGGGACCCAGCGGCTGCTCCAGCCACCGGCA GTATGCCGGCCGGGACCCAGCGGCTGCTCCAGCCACCAGCA < 41bp 1 0.760544434291905 1 0.783935785293579 experiment 0.478911131416191 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44747498 chr7:44747515 nonsynonymous SNV 0.986 4 38 hm5C_associated_SNPs_19335 0 0 1 0 1 OGDH chr7:44747478 3'AG 44747478 Downstream 38bp
chr1 53420447 53420447 1 + A G COAD 53420465 + 53420445 53420485 41 AGAAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT AGGAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT < 41bp 1 0.394704023480897 1 0.179698199033737 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53420465 chr1:53420447 nonsynonymous SNV 0.999 3 3 hm5C_associated_SNPs_19337 0 0 1 1 2 SCP2 chr1:53420412 3'AG 53420412 Downstream 36bp
chr1 53420447 53420447 1 + A G COAD 53420465 + 53420445 53420485 41 AGAAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT AGGAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT < 41bp 1 0.394704023480897 1 0.179698199033737 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53420465 chr1:53420447 nonsynonymous SNV 0.999 3 3 hm5C_associated_SNPs_19337 0 0 1 1 2 SCP2 chr1:53420476 5'GT 53420476 Upstream 30bp
chr6 36175100 36175100 1 + A G COAD 36175115 + 36175095 36175135 41 GCAGGATGAGAAGACAAGTGCAGTGAAGGAGGAGCTGAAGT GCAGGGTGAGAAGACAAGTGCAGTGAAGGAGGAGCTGAAGT < 41bp 1 0.255181481668304 1 0.499629020690918 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36175115 chr6:36175100 nonsynonymous SNV 0.987 3 6 hm5C_associated_SNPs_19338 0 0 1 0 1 BRPF3 chr6:36175090 3'AG 36175090 Downstream 11bp
chr2 203157515 203157515 1 + G T COAD 203157511 + 203157491 203157531 41 TTATACTAGGTGATTGAAATCTCTGAATATCGAACCCAGCT TTATACTAGGTGATTGAAATCTCTTAATATCGAACCCAGCT < 41bp 1 0.310499822590475 1 0.231705695390701 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOP58 ENSG00000055044 CDS Human protein_coding chr2:203157511 chr2:203157515 stopgain 0.993 1 25 hm5C_associated_SNPs_19339 0 0 1 0 1 NOP58 chr2:203157500 3'AG 203157500 Downstream 16bp
chr2 203157515 203157515 1 + G T COAD 203157513 + 203157493 203157533 41 ATACTAGGTGATTGAAATCTCTGAATATCGAACCCAGCTCT ATACTAGGTGATTGAAATCTCTTAATATCGAACCCAGCTCT < 41bp 1 0.591144861523928 1 0.577799141407013 experiment 0.817710276952145 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOP58 ENSG00000055044 CDS Human protein_coding chr2:203157513 chr2:203157515 stopgain 0.993 1 23 hm5C_associated_SNPs_19340 0 0 1 0 1 NOP58 chr2:203157500 3'AG 203157500 Downstream 16bp
chr17 7836621 7836621 1 + T C COAD 7836604 + 7836584 7836624 41 CCGCCTCATGAAGGGTTAGACGGCTTCGCCCAAGAATTGAG CCGCCTCATGAAGGGTTAGACGGCTTCGCCCAAGAATCGAG < 41bp 1 0.572986121223362 1 0.293002486228943 experiment 0.854027757553275 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNTROB ENSG00000170037 CDS Human protein_coding chr17:7836604 chr17:7836621 nonsynonymous SNV 0.963 3 38 hm5C_associated_SNPs_19341 0 0 1 0 1 CNTROB chr17:7836667 5'GT 7836667 Upstream 47bp
chr3 101311560 101311560 1 + A C COAD 101311550 + 101311530 101311570 41 ATAACCAGAAGCTGTGGGAGCGAAATATAAAATCTCATCTT ATAACCAGAAGCTGTGGGAGCGAAATATAACATCTCATCTT < 41bp 1 0.744987840494502 1 0.533668696880341 experiment 0.510024319010997 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNP ENSG00000081154 CDS Human protein_coding chr3:101311550 chr3:101311560 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_19342 0 0 1 0 1 PCNP chr3:101311471 3'AG 101311471 Downstream 90bp
chr8 143782019 143782019 1 + A C COAD 143782018 + 143781998 143782038 41 ACGCCAACCTGACTGCGAGACAACGAGATCCAGAGGACTCC ACGCCAACCTGACTGCGAGACCACGAGATCCAGAGGACTCC < 41bp 1 0.397475661700531 1 0.0720551908016205 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LY6K ENSG00000160886 CDS Human protein_coding chr8:143782018 chr8:143782019 nonsynonymous SNV 0.190 1 22 hm5C_associated_SNPs_19343 0 0 1 0 1 LY6K chr8:143782048 5'GT 143782048 Upstream 30bp
chr22 30074255 30074255 1 + C A COAD 30074250 + 30074230 30074270 41 TTCAACCTCATTGGTGACAGCCTGTCTTTCGACTTCAAAGA TTCAACCTCATTGGTGACAGCCTGTATTTCGACTTCAAAGA < 41bp 1 0.110460261569148 1 0.14758625626564 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30074250 chr22:30074255 nonsynonymous SNV 0.997 4 26 hm5C_associated_SNPs_19344 0 0 1 0 2 NF2 chr22:30074185 3'AG 30074185 Downstream 71bp
chr22 30074255 30074255 1 + C A COAD 30074250 + 30074230 30074270 41 TTCAACCTCATTGGTGACAGCCTGTCTTTCGACTTCAAAGA TTCAACCTCATTGGTGACAGCCTGTATTTCGACTTCAAAGA < 41bp 1 0.110460261569148 1 0.14758625626564 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30074250 chr22:30074255 nonsynonymous SNV 0.997 4 26 hm5C_associated_SNPs_19344 0 0 1 0 2 NF2 chr22:30074312 5'GT 30074312 Upstream 58bp
chr1 186047319 186047319 1 + G T COAD 186047314 + 186047294 186047334 41 ATGTGTGGCTGTGAATGAGGCTGGAGAAGATTCCCTTCAAT ATGTGTGGCTGTGAATGAGGCTGGATAAGATTCCCTTCAAT < 41bp 1 0.355745748780427 1 0.825096249580383 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HMCN1 ENSG00000143341 CDS Human protein_coding chr1:186047314 chr1:186047319 stopgain 1.000 1 26 hm5C_associated_SNPs_19346 0 0 0 0 2 HMCN1 chr1:186047239 3'AG 186047239 Downstream 81bp
chr1 186047319 186047319 1 + G T COAD 186047314 + 186047294 186047334 41 ATGTGTGGCTGTGAATGAGGCTGGAGAAGATTCCCTTCAAT ATGTGTGGCTGTGAATGAGGCTGGATAAGATTCCCTTCAAT < 41bp 1 0.355745748780427 1 0.825096249580383 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HMCN1 ENSG00000143341 CDS Human protein_coding chr1:186047314 chr1:186047319 stopgain 1.000 1 26 hm5C_associated_SNPs_19346 0 0 0 0 2 HMCN1 chr1:186047352 5'GT 186047352 Upstream 34bp
chr10 17276737 17276737 1 + C T COAD 17276740 + 17276720 17276760 41 GGAACAATGACGCCCTGCGCCAGGCAAAGCAGGAGTCCACT GGAACAATGACGCCCTGTGCCAGGCAAAGCAGGAGTCCACT < 41bp 1 0.57338620703187 1 0.608495652675629 experiment 0.85322758593626 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276740 chr10:17276737 nonsynonymous SNV 0.997 5 18 hm5C_associated_SNPs_19347 0 0 1 0 2 VIM chr10:17276692 3'AG 17276692 Downstream 46bp
chr10 17276737 17276737 1 + C T COAD 17276740 + 17276720 17276760 41 GGAACAATGACGCCCTGCGCCAGGCAAAGCAGGAGTCCACT GGAACAATGACGCCCTGTGCCAGGCAAAGCAGGAGTCCACT < 41bp 1 0.57338620703187 1 0.608495652675629 experiment 0.85322758593626 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276740 chr10:17276737 nonsynonymous SNV 0.997 5 18 hm5C_associated_SNPs_19347 0 0 1 0 2 VIM chr10:17276817 5'GT 17276817 Upstream 81bp
chr10 17276737 17276737 1 + C T COAD 17276757 + 17276737 17276777 41 CGCCAGGCAAAGCAGGAGTCCACTGAGTACCGGAGACAGGT TGCCAGGCAAAGCAGGAGTCCACTGAGTACCGGAGACAGGT < 41bp 1 0.290174414969855 1 0.132398396730423 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276757 chr10:17276737 nonsynonymous SNV 0.997 5 1 hm5C_associated_SNPs_19348 0 0 1 0 2 VIM chr10:17276692 3'AG 17276692 Downstream 46bp
chr10 17276737 17276737 1 + C T COAD 17276757 + 17276737 17276777 41 CGCCAGGCAAAGCAGGAGTCCACTGAGTACCGGAGACAGGT TGCCAGGCAAAGCAGGAGTCCACTGAGTACCGGAGACAGGT < 41bp 1 0.290174414969855 1 0.132398396730423 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276757 chr10:17276737 nonsynonymous SNV 0.997 5 1 hm5C_associated_SNPs_19348 0 0 1 0 2 VIM chr10:17276817 5'GT 17276817 Upstream 81bp
chr11 107917076 107917076 1 + T C COAD 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGCTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC < 41bp 1 0.421888566805512 1 0.399980247020721 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917076 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_19349 0 0 1 1 2 CUL5 chr11:107916997 3'AG 107916997 Downstream 80bp
chr11 107917076 107917076 1 + T C COAD 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGCTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC < 41bp 1 0.421888566805512 1 0.399980247020721 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917076 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_19349 0 0 1 1 2 CUL5 chr11:107917096 5'GT 107917096 Upstream 21bp
chr18 8114823 8114823 1 + A G COAD 8114803 + 8114783 8114823 41 ACACAGGAAACCAAAATAGACTGTGTCCAAGTGGCCACAAA ACACAGGAAACCAAAATAGACTGTGTCCAAGTGGCCACAAG < 41bp 1 0.174654527079759 1 0.0297829210758209 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:8114803 chr18:8114823 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_19350 0 0 1 0 2 PTPRM chr18:8114789 3'AG 8114789 Downstream 35bp
chr18 8114823 8114823 1 + A G COAD 8114803 + 8114783 8114823 41 ACACAGGAAACCAAAATAGACTGTGTCCAAGTGGCCACAAA ACACAGGAAACCAAAATAGACTGTGTCCAAGTGGCCACAAG < 41bp 1 0.174654527079759 1 0.0297829210758209 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:8114803 chr18:8114823 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_19350 0 0 1 0 2 PTPRM chr18:8114825 5'GT 8114825 Upstream 3bp
chrX 70362053 70362053 1 + A G COAD 70362071 + 70362051 70362091 41 ATATTTGGACGCTACTGAGCCACCTGGAGGAACTGCTTGTG ATGTTTGGACGCTACTGAGCCACCTGGAGGAACTGCTTGTG < 41bp 1 0.452189284322752 1 0.276103258132935 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70362071 chrX:70362053 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_19351 0 0 1 0 1 MED12 chrX:70362025 3'AG 70362025 Downstream 29bp
chr1 120254720 120254720 1 + T C COAD 120254703 + 120254683 120254723 41 ACAGCCTGGACCCTTGCTGCCGGAAGATCTTGCAAGATGGA ACAGCCTGGACCCTTGCTGCCGGAAGATCTTGCAAGACGGA < 41bp 1 0.728845397561699 1 0.759811818599701 experiment 0.542309204876601 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120254703 chr1:120254720 synonymous SNV . 0 38 hm5C_associated_SNPs_19352 0 0 1 0 1 PHGDH chr1:120254783 5'GT 120254783 Upstream 64bp
chr7 27833978 27833978 1 + A G COAD 27833973 + 27833953 27833993 41 TAATGTCTTCACAAAGAAAACGGGGAATCAGCAGAAAGTGA TAATGTCTTCACAAAGAAAACGGGGGATCAGCAGAAAGTGA < 41bp 1 0.773305009334613 1 0.728629767894745 experiment 0.453389981330774 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27833973 chr7:27833978 nonsynonymous SNV 0.971 0 26 hm5C_associated_SNPs_19353 0 0 1 0 2 TAX1BP1 chr7:27833942 3'AG 27833942 Downstream 37bp
chr7 27833978 27833978 1 + A G COAD 27833973 + 27833953 27833993 41 TAATGTCTTCACAAAGAAAACGGGGAATCAGCAGAAAGTGA TAATGTCTTCACAAAGAAAACGGGGGATCAGCAGAAAGTGA < 41bp 1 0.773305009334613 1 0.728629767894745 experiment 0.453389981330774 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27833973 chr7:27833978 nonsynonymous SNV 0.971 0 26 hm5C_associated_SNPs_19353 0 0 1 0 2 TAX1BP1 chr7:27834065 5'GT 27834065 Upstream 88bp
chr15 93528753 93528753 1 + A G COAD 93528742 + 93528722 93528762 41 TCTCAGGCTCAGACAAATGACAGTGACTCTGACACTGAGTC TCTCAGGCTCAGACAAATGACAGTGACTCTGGCACTGAGTC < 41bp 1 0.248802107647081 1 0.0567079782485962 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93528742 chr15:93528753 nonsynonymous SNV 0.997 2 32 hm5C_associated_SNPs_19354 0 0 1 0 1 CHD2 chr15:93528728 3'AG 93528728 Downstream 26bp
chr16 27760999 27760999 1 + C T COAD 27761012 + 27760992 27761032 41 GTGCCTTCGACCGCTCCCACCGGGGACGCATCTCCAACACG GTGCCTTTGACCGCTCCCACCGGGGACGCATCTCCAACACG < 41bp 1 0.568305537749561 1 0.886900782585144 experiment 0.863388924500878 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27761012 chr16:27760999 synonymous SNV . 0 8 hm5C_associated_SNPs_19355 0 0 0 0 1 KIAA0556 chr16:27760905 3'AG 27760905 Downstream 95bp
chr4 26407847 26407847 1 + T G COAD 26407834 + 26407814 26407854 41 ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCAT ATTTAAAAGAGCGAGGGGATCAAACAGTACTTAGTCTTCAT < 41bp 1 0.320441409805513 1 0.194055557250977 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBPJ ENSG00000168214 CDS Human protein_coding chr4:26407834 chr4:26407847 nonsynonymous SNV 1.000 5 34 hm5C_associated_SNPs_19357 0 0 1 0 2 RBPJ chr4:26407797 3'AG 26407797 Downstream 51bp
chr4 26407847 26407847 1 + T G COAD 26407834 + 26407814 26407854 41 ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCAT ATTTAAAAGAGCGAGGGGATCAAACAGTACTTAGTCTTCAT < 41bp 1 0.320441409805513 1 0.194055557250977 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBPJ ENSG00000168214 CDS Human protein_coding chr4:26407834 chr4:26407847 nonsynonymous SNV 1.000 5 34 hm5C_associated_SNPs_19357 0 0 1 0 2 RBPJ chr4:26407892 5'GT 26407892 Upstream 46bp
chr10 75557825 75557825 1 + A G COAD 75557805 + 75557785 75557825 41 CTGGCTCTCACGTACTTATTCTTCCCACGTTTCCTGGATTA CTGGCTCTCACGTACTTATTCTTCCCACGTTTCCTGGATTG < 41bp 1 0.111474831604807 1 0.22045624256134 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75557805 chr10:75557825 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_19358 0 0 1 0 1 ZSWIM8 chr10:75557828 5'GT 75557828 Upstream 4bp
chr8 26223885 26223885 1 + T G COAD 26223878 + 26223858 26223898 41 TGTTCACTGTATGAAAATGACTGCATATTTGACAAATTTGA TGTTCACTGTATGAAAATGACTGCATAGTTGACAAATTTGA < 41bp 1 0.506079999002433 1 0.0772775709629059 experiment 0.987840001995135 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223878 chr8:26223885 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_19359 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 55bp
chr8 26223885 26223885 1 + T G COAD 26223878 + 26223858 26223898 41 TGTTCACTGTATGAAAATGACTGCATATTTGACAAATTTGA TGTTCACTGTATGAAAATGACTGCATAGTTGACAAATTTGA < 41bp 1 0.506079999002433 1 0.0772775709629059 experiment 0.987840001995135 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223878 chr8:26223885 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_19359 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 38bp
chr8 26223885 26223885 1 + T G COAD 26223881 + 26223861 26223901 41 TCACTGTATGAAAATGACTGCATATTTGACAAATTTGAATG TCACTGTATGAAAATGACTGCATAGTTGACAAATTTGAATG < 41bp 1 0.137130447781031 1 0.115013241767883 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223881 chr8:26223885 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_19360 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 55bp
chr8 26223885 26223885 1 + T G COAD 26223881 + 26223861 26223901 41 TCACTGTATGAAAATGACTGCATATTTGACAAATTTGAATG TCACTGTATGAAAATGACTGCATAGTTGACAAATTTGAATG < 41bp 1 0.137130447781031 1 0.115013241767883 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223881 chr8:26223885 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_19360 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 38bp
chr8 26223885 26223885 1 + T G COAD 26223890 + 26223870 26223910 41 GAAAATGACTGCATATTTGACAAATTTGAATGTTGTTGGAA GAAAATGACTGCATAGTTGACAAATTTGAATGTTGTTGGAA < 41bp 1 0.226981336069359 1 0.330736845731735 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223890 chr8:26223885 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_19361 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 55bp
chr8 26223885 26223885 1 + T G COAD 26223890 + 26223870 26223910 41 GAAAATGACTGCATATTTGACAAATTTGAATGTTGTTGGAA GAAAATGACTGCATAGTTGACAAATTTGAATGTTGTTGGAA < 41bp 1 0.226981336069359 1 0.330736845731735 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223890 chr8:26223885 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_19361 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 38bp
chr12 94563003 94563003 1 + T C COAD 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATCCATTCCGACCTGACATCCGTCTATGGCACCGTGGTAAT < 41bp 1 0.141046698443456 1 0.15627846121788 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94563003 synonymous SNV . 0 24 hm5C_associated_SNPs_19362 0 0 1 0 2 PLXNC1 chr12:94562929 3'AG 94562929 Downstream 75bp
chr12 94563003 94563003 1 + T C COAD 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATCCATTCCGACCTGACATCCGTCTATGGCACCGTGGTAAT < 41bp 1 0.141046698443456 1 0.15627846121788 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94563003 synonymous SNV . 0 24 hm5C_associated_SNPs_19362 0 0 1 0 2 PLXNC1 chr12:94563069 5'GT 94563069 Upstream 67bp
chr9 100418018 100418018 1 + T G COAD 100418035 + 100418015 100418055 41 AACTTCCAGTTCCGTTGGAGCTGGGAAGATTGGTAAGTGAT AACGTCCAGTTCCGTTGGAGCTGGGAAGATTGGTAAGTGAT < 41bp 1 0.568249831344989 1 0.695029020309448 experiment 0.863500337310022 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100418035 chr9:100418018 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_19363 0 0 1 0 2 NCBP1 chr9:100417984 3'AG 100417984 Downstream 35bp
chr9 100418018 100418018 1 + T G COAD 100418035 + 100418015 100418055 41 AACTTCCAGTTCCGTTGGAGCTGGGAAGATTGGTAAGTGAT AACGTCCAGTTCCGTTGGAGCTGGGAAGATTGGTAAGTGAT < 41bp 1 0.568249831344989 1 0.695029020309448 experiment 0.863500337310022 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100418035 chr9:100418018 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_19363 0 0 1 0 2 NCBP1 chr9:100418046 5'GT 100418046 Upstream 29bp
chr3 4776946 4776946 1 + G A COAD 4776929 + 4776909 4776949 41 TCACCTTGACAAGGAGGGGGCTTCCAATCTAGTTATCGACC TCACCTTGACAAGGAGGGGGCTTCCAATCTAGTTATCAACC < 41bp 1 0.0224907510440298 1 0.0835446417331696 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4776929 chr3:4776946 nonsynonymous SNV 0.855 5 38 hm5C_associated_SNPs_19364 0 0 1 0 2 ITPR1 chr3:4776848 3'AG 4776848 Downstream 99bp
chr3 4776946 4776946 1 + G A COAD 4776929 + 4776909 4776949 41 TCACCTTGACAAGGAGGGGGCTTCCAATCTAGTTATCGACC TCACCTTGACAAGGAGGGGGCTTCCAATCTAGTTATCAACC < 41bp 1 0.0224907510440298 1 0.0835446417331696 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4776929 chr3:4776946 nonsynonymous SNV 0.855 5 38 hm5C_associated_SNPs_19364 0 0 1 0 2 ITPR1 chr3:4777038 5'GT 4777038 Upstream 93bp
chr20 42249524 42249524 1 + G T COAD 42249532 + 42249512 42249552 41 TGGCTCACGACAGGAGACATCCACCTAAACCAGATTGATGC TGGCTCACGACATGAGACATCCACCTAAACCAGATTGATGC < 41bp 1 0.115605848658441 1 0.0567057728767395 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFT52 ENSG00000101052 CDS Human protein_coding chr20:42249532 chr20:42249524 stopgain 0.791 0 13 hm5C_associated_SNPs_19366 0 0 1 0 1 IFT52 chr20:42249497 3'AG 42249497 Downstream 28bp
chr12 22208509 22208509 1 + G A COAD 22208514 + 22208494 22208534 41 TCTCTGTTGTGAGACGCCATCAGTTTCGATGGAGTGAAATT TCTCTGTTGTGAGACACCATCAGTTTCGATGGAGTGAAATT < 41bp 1 0.346034440483047 1 0.158171236515045 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208514 chr12:22208509 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_19367 0 0 1 0 1 CMAS chr12:22208544 5'GT 22208544 Upstream 36bp
chr7 129029019 129029019 1 + G T COAD 129029013 + 129028993 129029033 41 TCAAACAGGCAGAGTTTGGACGAAGAGAAATTGAAATTGCT TCAAACAGGCAGAGTTTGGACGAAGATAAATTGAAATTGCT < 41bp 1 0.297904467369258 1 0.305179834365845 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129029013 chr7:129029019 stopgain 1.000 1 27 hm5C_associated_SNPs_19368 0 0 1 0 1 AHCYL2 chr7:129029040 5'GT 129029040 Upstream 22bp
chr2 216995653 216995653 1 + G T COAD 216995648 + 216995628 216995668 41 TCTCTAAAGTGGATGAGGAACAAATGAAATATAAATCGGAG TCTCTAAAGTGGATGAGGAACAAATTAAATATAAATCGGAG < 41bp 1 0.325811627146229 1 0.476486444473267 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout XRCC5 ENSG00000079246 CDS Human protein_coding chr2:216995648 chr2:216995653 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_19369 0 0 1 0 1 XRCC5 chr2:216995710 5'GT 216995710 Upstream 58bp
chr7 134215408 134215408 1 + A C COAD 134215396 + 134215376 134215416 41 CTTTTCTTTTGCCTTTCAGTCTCCTCTTGGCAAAGTGAAAG CTTTTCTTTTGCCTTTCAGTCTCCTCTTGGCACAGTGAAAG < 41bp 1 0.279557284960692 1 0.31738018989563 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134215396 chr7:134215408 nonsynonymous SNV 0.185 0 33 hm5C_associated_SNPs_19370 0 0 1 0 1 AKR1B10 chr7:134215395 3'AG 134215395 Downstream 14bp
chr5 158696002 158696002 1 + G A COAD 158695994 + 158695974 158696014 41 CACACTTTCAGAAGATGATACTGTGCTCGATCTCAAACAGT CACACTTTCAGAAGATGATACTGTGCTCAATCTCAAACAGT < 41bp 1 0.320575039057658 1 0.0968188941478729 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBLCP1 ENSG00000164332 CDS Human protein_coding chr5:158695994 chr5:158696002 nonsynonymous SNV 0.964 2 29 hm5C_associated_SNPs_19371 0 0 1 0 1 UBLCP1 chr5:158696077 5'GT 158696077 Upstream 76bp
chr3 142422794 142422794 1 + G T COAD 142422814 + 142422794 142422834 41 GAAGGGAATTCAACACTTACCCTGGCATTGGTATGGCAGCT TAAGGGAATTCAACACTTACCCTGGCATTGGTATGGCAGCT < 41bp 1 0.302823689630959 1 0.148215532302856 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLS1 ENSG00000120756 CDS Human protein_coding chr3:142422814 chr3:142422794 stopgain 1.000 1 1 hm5C_associated_SNPs_19372 0 0 1 0 2 PLS1 chr3:142422710 3'AG 142422710 Downstream 85bp
chr3 142422794 142422794 1 + G T COAD 142422814 + 142422794 142422834 41 GAAGGGAATTCAACACTTACCCTGGCATTGGTATGGCAGCT TAAGGGAATTCAACACTTACCCTGGCATTGGTATGGCAGCT < 41bp 1 0.302823689630959 1 0.148215532302856 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLS1 ENSG00000120756 CDS Human protein_coding chr3:142422814 chr3:142422794 stopgain 1.000 1 1 hm5C_associated_SNPs_19372 0 0 1 0 2 PLS1 chr3:142422843 5'GT 142422843 Upstream 50bp
chr2 86968155 86968155 1 + A G COAD 86968142 + 86968122 86968162 41 TTCAAAAATTGGCCTCCGACCACAAAGACATCCACAGCAGT TTCAAAAATTGGCCTCCGACCACAAAGACATCCGCAGCAGT < 41bp 1 0.42374515581464 1 0.740948379039764 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RMND5A ENSG00000153561 CDS Human protein_coding chr2:86968142 chr2:86968155 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_19374 0 0 0 0 1 RMND5A chr2:86968192 5'GT 86968192 Upstream 38bp
chr16 56501925 56501925 1 + C A COAD 56501910 + 56501890 56501930 41 TTGAAGAAAGTTCTGAAATTCTCCTGAAGGAGTTTCTTAAG TTGAAGAAAGTTCTGAAATTCTCCTGAAGGAGTTTATTAAG < 41bp 1 0.540315558653331 1 0.925218939781189 experiment 0.919368882693338 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGFOD1 ENSG00000087263 CDS Human protein_coding chr16:56501910 chr16:56501925 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_19375 0 0 1 0 1 OGFOD1 chr16:56501930 5'GT 56501930 Upstream 6bp
chr10 17272655 17272655 1 + G A COAD 17272665 + 17272645 17272685 41 TCAGATTGCAGGAGGAGATGCTTCAGAGAGAGGAAGCCGAA TCAGATTGCAAGAGGAGATGCTTCAGAGAGAGGAAGCCGAA < 41bp 1 0.468847916370163 1 0.219377368688583 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout VIM ENSG00000026025 CDS Human protein_coding chr10:17272665 chr10:17272655 synonymous SNV . 0 11 hm5C_associated_SNPs_19376 0 0 1 0 2 VIM chr10:17272649 3'AG 17272649 Downstream 7bp
chr10 17272655 17272655 1 + G A COAD 17272665 + 17272645 17272685 41 TCAGATTGCAGGAGGAGATGCTTCAGAGAGAGGAAGCCGAA TCAGATTGCAAGAGGAGATGCTTCAGAGAGAGGAAGCCGAA < 41bp 1 0.468847916370163 1 0.219377368688583 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout VIM ENSG00000026025 CDS Human protein_coding chr10:17272665 chr10:17272655 synonymous SNV . 0 11 hm5C_associated_SNPs_19376 0 0 1 0 2 VIM chr10:17272709 5'GT 17272709 Upstream 55bp
chr11 65391072 65391072 1 + A G COAD 65391061 + 65391041 65391081 41 AAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGCCT AAGGGCTTCTTCACTGACATCTGGGTCTTCCGGTTCTGCCT < 41bp 1 0.579609595124013 1 0.499529093503952 experiment 0.840780809751975 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65391061 chr11:65391072 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_19377 0 0 1 0 1 PCNX3 chr11:65391115 5'GT 65391115 Upstream 44bp
chr15 65855202 65855202 1 + G A COAD 65855212 + 65855192 65855232 41 CTGACTGTGCGATTCTGTATCTTGGGAAAAGGCAAGTAAGA CTGACTGTGCAATTCTGTATCTTGGGAAAAGGCAAGTAAGA < 41bp 1 0.485342982647659 1 0.400516837835312 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HACD3 ENSG00000074696 CDS Human protein_coding chr15:65855212 chr15:65855202 nonsynonymous SNV 0.995 3 11 hm5C_associated_SNPs_19378 0 0 1 0 1 HACD3 chr15:65855112 3'AG 65855112 Downstream 91bp
chr17 4797387 4797387 1 + G A COAD 4797367 + 4797347 4797387 41 ACCCAGCCCCCATACGGGGGCGGCACCATGGTGGTCCAGCG ACCCAGCCCCCATACGGGGGCGGCACCATGGTGGTCCAGCA < 41bp 1 0.439405465520621 1 0.261125862598419 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797367 chr17:4797387 nonsynonymous SNV 0.997 3 41 hm5C_associated_SNPs_19379 0 0 1 0 1 MINK1 chr17:4797388 5'GT 4797388 Upstream 2bp
chr5 68490518 68490518 1 + G A COAD 68490522 + 68490502 68490542 41 GCAAGAAAAGCAAATCGAAGCGTATGTTATATTTAAAAATT GCAAGAAAAGCAAATCAAAGCGTATGTTATATTTAAAAATT < 41bp 1 0.199586682707258 1 0.212669193744659 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CENPH ENSG00000153044 CDS Human protein_coding chr5:68490522 chr5:68490518 nonsynonymous SNV 0.932 2 17 hm5C_associated_SNPs_19380 0 0 0 0 1 CENPH chr5:68490474 3'AG 68490474 Downstream 45bp
chr5 66432400 66432400 1 + A G COAD 66432398 + 66432378 66432418 41 TTCTTCCTTCTAGATGAGATCAACTGGCCTGAGAAGGATGA TTCTTCCTTCTAGATGAGATCAGCTGGCCTGAGAAGGATGA < 41bp 1 0.138443686305914 1 0.209422558546066 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAST4 ENSG00000069020 CDS Human protein_coding chr5:66432398 chr5:66432400 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_19381 0 0 1 0 2 MAST4 chr5:66432391 3'AG 66432391 Downstream 10bp
chr5 66432400 66432400 1 + A G COAD 66432398 + 66432378 66432418 41 TTCTTCCTTCTAGATGAGATCAACTGGCCTGAGAAGGATGA TTCTTCCTTCTAGATGAGATCAGCTGGCCTGAGAAGGATGA < 41bp 1 0.138443686305914 1 0.209422558546066 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAST4 ENSG00000069020 CDS Human protein_coding chr5:66432398 chr5:66432400 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_19381 0 0 1 0 2 MAST4 chr5:66432492 5'GT 66432492 Upstream 93bp
chr11 48142739 48142739 1 + G A COAD 48142738 + 48142718 48142758 41 CATCACAGGCTTACGTCCAGCGACTTCATATGTATTCTCCA CATCACAGGCTTACGTCCAGCAACTTCATATGTATTCTCCA < 41bp 1 0.139436906597865 1 0.0363475382328033 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48142738 chr11:48142739 synonymous SNV . 0 22 hm5C_associated_SNPs_19382 0 0 0 0 1 PTPRJ chr11:48142818 5'GT 48142818 Upstream 80bp
chr3 50614572 50614572 1 + C T COAD 50614569 + 50614549 50614589 41 CCCCTCATTCTGGAGGTGGGCTGCGGATCAGGAGCCATCTC CCCCTCATTCTGGAGGTGGGCTGTGGATCAGGAGCCATCTC < 41bp 1 0.517410111866762 1 0.0791099667549133 experiment 0.965179776266475 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614569 chr3:50614572 synonymous SNV . 0 24 hm5C_associated_SNPs_19383 0 0 0 0 2 HEMK1 chr3:50614483 3'AG 50614483 Downstream 90bp
chr3 50614572 50614572 1 + C T COAD 50614569 + 50614549 50614589 41 CCCCTCATTCTGGAGGTGGGCTGCGGATCAGGAGCCATCTC CCCCTCATTCTGGAGGTGGGCTGTGGATCAGGAGCCATCTC < 41bp 1 0.517410111866762 1 0.0791099667549133 experiment 0.965179776266475 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614569 chr3:50614572 synonymous SNV . 0 24 hm5C_associated_SNPs_19383 0 0 0 0 2 HEMK1 chr3:50614617 5'GT 50614617 Upstream 46bp
chr8 100182336 100182336 1 + A G COAD 100182330 + 100182310 100182350 41 GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAGC GATCTTACTGCTTACCTGTACCAGTTGTTCCCTCTTTCAGC < 41bp 1 0.0815522941462324 1 0.0640579462051392 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100182330 chr8:100182336 nonsynonymous SNV 0.998 0 27 hm5C_associated_SNPs_19384 0 0 1 0 2 VPS13B chr8:100182267 3'AG 100182267 Downstream 70bp
chr8 100182336 100182336 1 + A G COAD 100182330 + 100182310 100182350 41 GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAGC GATCTTACTGCTTACCTGTACCAGTTGTTCCCTCTTTCAGC < 41bp 1 0.0815522941462324 1 0.0640579462051392 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100182330 chr8:100182336 nonsynonymous SNV 0.998 0 27 hm5C_associated_SNPs_19384 0 0 1 0 2 VPS13B chr8:100182391 5'GT 100182391 Upstream 56bp
chr11 65978616 65978616 1 + C A COAD 65978630 + 65978610 65978650 41 TCATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGC TCATTTACTTAAGCGAGATGCCAACAAGCTGCAGATCATGC < 41bp 1 0.0134988741987436 1 0.0959980189800262 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978630 chr11:65978616 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_19385 0 0 1 0 1 PACS1 chr11:65978605 3'AG 65978605 Downstream 12bp
chr11 65978616 65978616 1 + C A COAD 65978631 + 65978611 65978651 41 CATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGCT CATTTACTTAAGCGAGATGCCAACAAGCTGCAGATCATGCT < 41bp 1 0.319553925211044 1 0.382912576198578 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978631 chr11:65978616 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_19386 0 0 1 0 1 PACS1 chr11:65978605 3'AG 65978605 Downstream 12bp
chr1 28600559 28600559 1 + C T COAD 28600565 + 28600545 28600585 41 CCTCAGCTGACATCCTGGAGCCCTCTCCACACCCAGACATG CCTCAGCTGACATCTTGGAGCCCTCTCCACACCCAGACATG < 41bp 1 0.0236534435605204 1 0.0295820534229279 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SESN2 ENSG00000130766 CDS Human protein_coding chr1:28600565 chr1:28600559 synonymous SNV . 0 15 hm5C_associated_SNPs_19387 0 0 1 0 1 SESN2 chr1:28600551 3'AG 28600551 Downstream 9bp
chr7 102995377 102995377 1 + G T COAD 102995366 + 102995346 102995386 41 AAGTTGAAGATGACATTCAGCAACTTCTCAAGAAAATTAAT AAGTTGAAGATGACATTCAGCAACTTCTCAATAAAATTAAT < 41bp 1 0.311260497207512 1 0.0943071842193604 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMC2 ENSG00000161057 CDS Human protein_coding chr7:102995366 chr7:102995377 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_19389 0 0 1 0 1 PSMC2 chr7:102995396 5'GT 102995396 Upstream 20bp
chr4 56291563 56291563 1 + G A COAD 56291562 + 56291542 56291582 41 GTGACAATCATAGGAGGCATCGTTTTTTTGGCGTTTGCATT GTGACAATCATAGGAGGCATCATTTTTTTGGCGTTTGCATT < 41bp 1 0.0864393196679213 1 0.132103383541107 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TMEM165 ENSG00000134851 CDS Human protein_coding chr4:56291562 chr4:56291563 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_19390 0 0 1 0 1 TMEM165 chr4:56291543 3'AG 56291543 Downstream 21bp
chr10 118306811 118306811 1 + G T COAD 118306831 + 118306811 118306851 41 GAAGTTTGCTACGAAAGACTCGGCTGCTTCAGTGATGACTC TAAGTTTGCTACGAAAGACTCGGCTGCTTCAGTGATGACTC < 41bp 1 0.671069287105849 1 0.202677756547928 experiment 0.657861425788302 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306831 chr10:118306811 stopgain 0.997 1 1 hm5C_associated_SNPs_19394 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 6bp
chr5 176468200 176468200 1 + T G COAD 176468185 + 176468165 176468205 41 AACACCCAGTGTAAGGTTTGCTGCGCCTTGCTTATTTCTGA AACACCCAGTGTAAGGTTTGCTGCGCCTTGCTTATGTCTGA < 41bp 1 0.515723323866401 1 0.104960232973099 experiment 0.968553352267198 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF346 ENSG00000113761 CDS Human protein_coding chr5:176468185 chr5:176468200 nonsynonymous SNV 0.976 3 36 hm5C_associated_SNPs_19395 0 0 1 0 2 ZNF346 chr5:176468127 3'AG 176468127 Downstream 74bp
chr5 176468200 176468200 1 + T G COAD 176468185 + 176468165 176468205 41 AACACCCAGTGTAAGGTTTGCTGCGCCTTGCTTATTTCTGA AACACCCAGTGTAAGGTTTGCTGCGCCTTGCTTATGTCTGA < 41bp 1 0.515723323866401 1 0.104960232973099 experiment 0.968553352267198 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF346 ENSG00000113761 CDS Human protein_coding chr5:176468185 chr5:176468200 nonsynonymous SNV 0.976 3 36 hm5C_associated_SNPs_19395 0 0 1 0 2 ZNF346 chr5:176468230 5'GT 176468230 Upstream 31bp
chr4 42020145 42020145 1 + G T COAD 42020141 + 42020121 42020161 41 TTTACAGCAGAAGGTATAGGCACAGAACTCAAAGCTCCACT TTTACAGCAGAAGGTATAGGCACATAACTCAAAGCTCCACT < 41bp 1 0.36386580890573 1 0.0623792111873627 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42020141 chr4:42020145 stopgain 0.771 0 25 hm5C_associated_SNPs_19396 0 0 1 0 2 SLC30A9 chr4:42020128 3'AG 42020128 Downstream 18bp
chr4 42020145 42020145 1 + G T COAD 42020141 + 42020121 42020161 41 TTTACAGCAGAAGGTATAGGCACAGAACTCAAAGCTCCACT TTTACAGCAGAAGGTATAGGCACATAACTCAAAGCTCCACT < 41bp 1 0.36386580890573 1 0.0623792111873627 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42020141 chr4:42020145 stopgain 0.771 0 25 hm5C_associated_SNPs_19396 0 0 1 0 2 SLC30A9 chr4:42020187 5'GT 42020187 Upstream 43bp
chr4 42020145 42020145 1 + G T COAD 42020143 + 42020123 42020163 41 TACAGCAGAAGGTATAGGCACAGAACTCAAAGCTCCACTTA TACAGCAGAAGGTATAGGCACATAACTCAAAGCTCCACTTA < 41bp 1 0.419502299816418 1 0.0995650291442871 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42020143 chr4:42020145 stopgain 0.771 0 23 hm5C_associated_SNPs_19397 0 0 1 0 2 SLC30A9 chr4:42020128 3'AG 42020128 Downstream 18bp
chr4 42020145 42020145 1 + G T COAD 42020143 + 42020123 42020163 41 TACAGCAGAAGGTATAGGCACAGAACTCAAAGCTCCACTTA TACAGCAGAAGGTATAGGCACATAACTCAAAGCTCCACTTA < 41bp 1 0.419502299816418 1 0.0995650291442871 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42020143 chr4:42020145 stopgain 0.771 0 23 hm5C_associated_SNPs_19397 0 0 1 0 2 SLC30A9 chr4:42020187 5'GT 42020187 Upstream 43bp
chr19 2343247 2343247 1 + T C COAD 2343242 + 2343222 2343262 41 CTCCAGGATGCCCTGGGCATCGCCTTCTGCCTCTACATGCT CTCCAGGATGCCCTGGGCATCGCCTCCTGCCTCTACATGCT < 41bp 1 0.31566207179026 1 0.148010939359665 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPPL2B ENSG00000005206 ncRNA_exonic Human protein_coding chr19:2343242 chr19:2343247 . 0.999 3 26 hm5C_associated_SNPs_19398 0 0 1 0 2 SPPL2B chr19:2343209 3'AG 2343209 Downstream 39bp
chr19 2343247 2343247 1 + T C COAD 2343242 + 2343222 2343262 41 CTCCAGGATGCCCTGGGCATCGCCTTCTGCCTCTACATGCT CTCCAGGATGCCCTGGGCATCGCCTCCTGCCTCTACATGCT < 41bp 1 0.31566207179026 1 0.148010939359665 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPPL2B ENSG00000005206 ncRNA_exonic Human protein_coding chr19:2343242 chr19:2343247 . 0.999 3 26 hm5C_associated_SNPs_19398 0 0 1 0 2 SPPL2B chr19:2343290 5'GT 2343290 Upstream 44bp
chr2 32339825 32339825 1 + T G COAD 32339810 + 32339790 32339830 41 GGATCTGCAGGCCTTTCAGGCCACCATAGAGCACCTAGTTA GGATCTGCAGGCCTTTCAGGCCACCATAGAGCACCGAGTTA < 41bp 1 0.0969304323284405 1 0.0487041771411896 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32339810 chr2:32339825 synonymous SNV . 0 36 hm5C_associated_SNPs_19399 0 0 1 0 1 SPAST chr2:32339894 5'GT 32339894 Upstream 70bp
chr2 32339825 32339825 1 + T G COAD 32339811 + 32339791 32339831 41 GATCTGCAGGCCTTTCAGGCCACCATAGAGCACCTAGTTAC GATCTGCAGGCCTTTCAGGCCACCATAGAGCACCGAGTTAC < 41bp 1 0.771913724531257 1 0.15081924200058 experiment 0.456172550937486 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32339811 chr2:32339825 synonymous SNV . 0 35 hm5C_associated_SNPs_19400 0 0 1 0 1 SPAST chr2:32339894 5'GT 32339894 Upstream 70bp
chr2 32339825 32339825 1 + T G COAD 32339813 + 32339793 32339833 41 TCTGCAGGCCTTTCAGGCCACCATAGAGCACCTAGTTACAG TCTGCAGGCCTTTCAGGCCACCATAGAGCACCGAGTTACAG < 41bp 1 0.261000719367733 1 0.0398304462432861 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32339813 chr2:32339825 synonymous SNV . 0 33 hm5C_associated_SNPs_19401 0 0 1 0 1 SPAST chr2:32339894 5'GT 32339894 Upstream 70bp
chr7 135291515 135291515 1 + G T COAD 135291502 + 135291482 135291522 41 GTGATTTCTGCATTAAGGATCAGAACTTGAAAAGAAATTAG GTGATTTCTGCATTAAGGATCAGAACTTGAAAATAAATTAG < 41bp 1 0.185299620212655 1 0.526934087276459 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135291502 chr7:135291515 nonsynonymous SNV 0.552 0 34 hm5C_associated_SNPs_19402 0 0 1 0 1 NUP205 chr7:135291499 3'AG 135291499 Downstream 17bp
chr16 55527087 55527087 1 + G A COAD 55527074 + 55527054 55527094 41 CAGGTGTTCTCCCCAGGGGCCTCTCCTGACATTGACCTTGG CAGGTGTTCTCCCCAGGGGCCTCTCCTGACATTAACCTTGG < 41bp 1 0.0844255559824162 1 0.0999368131160736 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP2 ENSG00000087245 CDS Human protein_coding chr16:55527074 chr16:55527087 nonsynonymous SNV 0.430 0 34 hm5C_associated_SNPs_19403 0 0 0 0 1 MMP2 chr16:55527070 3'AG 55527070 Downstream 18bp
chr7 102109447 102109447 1 + G A COAD 102109445 + 102109425 102109465 41 GGCTTCTGCTGCGGGGTCATCCGAGCCCACAAGAAGGCCAT GGCTTCTGCTGCGGGGTCATCCAAGCCCACAAGAAGGCCAT < 41bp 1 0.266570044854815 1 0.756158590316772 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102109445 chr7:102109447 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_19404 0 0 1 0 1 LRWD1 chr7:102109509 5'GT 102109509 Upstream 63bp
chr8 121259951 121259951 1 + G T COAD 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATATAAT < 41bp 1 0.371247175092459 1 0.0820191502571106 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259951 nonsynonymous SNV 0.973 4 38 hm5C_associated_SNPs_19407 0 0 0 0 2 COL14A1 chr8:121259852 3'AG 121259852 Downstream 100bp
chr8 121259951 121259951 1 + G T COAD 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATATAAT < 41bp 1 0.371247175092459 1 0.0820191502571106 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259951 nonsynonymous SNV 0.973 4 38 hm5C_associated_SNPs_19407 0 0 0 0 2 COL14A1 chr8:121259974 5'GT 121259974 Upstream 24bp
chr22 40762493 40762493 1 + C T COAD 40762482 + 40762462 40762502 41 AGGTGTATCCCCTGTTAAAACCATATGAAAGCGTGATGAAG AGGTGTATCCCCTGTTAAAACCATATGAAAGTGTGATGAAG < 41bp 1 0.393452688627861 1 0.132406115531921 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ADSL ENSG00000239900 CDS Human protein_coding chr22:40762482 chr22:40762493 synonymous SNV . 0 32 hm5C_associated_SNPs_19408 0 0 1 0 1 ADSL chr22:40762440 3'AG 40762440 Downstream 54bp
chr20 37662910 37662910 1 + G T COAD 37662905 + 37662885 37662925 41 CTACATGAGAGATGTGACTGCCATTGAATCGGCCTGGCTGT CTACATGAGAGATGTGACTGCCATTTAATCGGCCTGGCTGT < 41bp 1 0.0544600078275772 1 0.0557839274406433 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX35 ENSG00000101452 CDS Human protein_coding chr20:37662905 chr20:37662910 stopgain 0.997 1 26 hm5C_associated_SNPs_19409 0 0 1 0 1 DHX35 chr20:37662960 5'GT 37662960 Upstream 51bp
chr11 114273576 114273576 1 + A G COAD 114273562 + 114273542 114273582 41 CATTTTAGGAAGTAGTCATGCCCCACAAGATGTCAGTTTGT CATTTTAGGAAGTAGTCATGCCCCACAAGATGTCGGTTTGT < 41bp 1 0.522973506002198 1 0.12270188331604 experiment 0.954052987995604 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273562 chr11:114273576 nonsynonymous SNV 0.976 0 35 hm5C_associated_SNPs_19411 0 0 1 0 3 RBM7 chr11:114273550 3'AG 114273550 Downstream 27bp
chr11 114273576 114273576 1 + A G COAD 114273562 + 114273542 114273582 41 CATTTTAGGAAGTAGTCATGCCCCACAAGATGTCAGTTTGT CATTTTAGGAAGTAGTCATGCCCCACAAGATGTCGGTTTGT < 41bp 1 0.522973506002198 1 0.12270188331604 experiment 0.954052987995604 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273562 chr11:114273576 nonsynonymous SNV 0.976 0 35 hm5C_associated_SNPs_19411 0 0 1 0 3 RBM7 chr11:114273554 3'AG 114273554 Downstream 23bp
chr11 114273576 114273576 1 + A G COAD 114273562 + 114273542 114273582 41 CATTTTAGGAAGTAGTCATGCCCCACAAGATGTCAGTTTGT CATTTTAGGAAGTAGTCATGCCCCACAAGATGTCGGTTTGT < 41bp 1 0.522973506002198 1 0.12270188331604 experiment 0.954052987995604 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273562 chr11:114273576 nonsynonymous SNV 0.976 0 35 hm5C_associated_SNPs_19411 0 0 1 0 3 RBM7 chr11:114273637 5'GT 114273637 Upstream 62bp
chr11 114273576 114273576 1 + A G COAD 114273563 + 114273543 114273583 41 ATTTTAGGAAGTAGTCATGCCCCACAAGATGTCAGTTTGTC ATTTTAGGAAGTAGTCATGCCCCACAAGATGTCGGTTTGTC < 41bp 1 0.162596549081644 1 0.165751606225967 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273563 chr11:114273576 nonsynonymous SNV 0.976 0 34 hm5C_associated_SNPs_19412 0 0 1 0 3 RBM7 chr11:114273550 3'AG 114273550 Downstream 27bp
chr11 114273576 114273576 1 + A G COAD 114273563 + 114273543 114273583 41 ATTTTAGGAAGTAGTCATGCCCCACAAGATGTCAGTTTGTC ATTTTAGGAAGTAGTCATGCCCCACAAGATGTCGGTTTGTC < 41bp 1 0.162596549081644 1 0.165751606225967 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273563 chr11:114273576 nonsynonymous SNV 0.976 0 34 hm5C_associated_SNPs_19412 0 0 1 0 3 RBM7 chr11:114273554 3'AG 114273554 Downstream 23bp
chr11 114273576 114273576 1 + A G COAD 114273563 + 114273543 114273583 41 ATTTTAGGAAGTAGTCATGCCCCACAAGATGTCAGTTTGTC ATTTTAGGAAGTAGTCATGCCCCACAAGATGTCGGTTTGTC < 41bp 1 0.162596549081644 1 0.165751606225967 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273563 chr11:114273576 nonsynonymous SNV 0.976 0 34 hm5C_associated_SNPs_19412 0 0 1 0 3 RBM7 chr11:114273637 5'GT 114273637 Upstream 62bp
chr11 114273576 114273576 1 + A G COAD 114273583 + 114273563 114273603 41 CCCACAAGATGTCAGTTTGTCATATCCCCAACATCATGTTG CCCACAAGATGTCGGTTTGTCATATCCCCAACATCATGTTG < 41bp 1 0.3726065424054 1 0.167359471321106 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273583 chr11:114273576 nonsynonymous SNV 0.976 0 14 hm5C_associated_SNPs_19413 0 0 1 0 3 RBM7 chr11:114273550 3'AG 114273550 Downstream 27bp
chr11 114273576 114273576 1 + A G COAD 114273583 + 114273563 114273603 41 CCCACAAGATGTCAGTTTGTCATATCCCCAACATCATGTTG CCCACAAGATGTCGGTTTGTCATATCCCCAACATCATGTTG < 41bp 1 0.3726065424054 1 0.167359471321106 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273583 chr11:114273576 nonsynonymous SNV 0.976 0 14 hm5C_associated_SNPs_19413 0 0 1 0 3 RBM7 chr11:114273554 3'AG 114273554 Downstream 23bp
chr11 114273576 114273576 1 + A G COAD 114273583 + 114273563 114273603 41 CCCACAAGATGTCAGTTTGTCATATCCCCAACATCATGTTG CCCACAAGATGTCGGTTTGTCATATCCCCAACATCATGTTG < 41bp 1 0.3726065424054 1 0.167359471321106 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273583 chr11:114273576 nonsynonymous SNV 0.976 0 14 hm5C_associated_SNPs_19413 0 0 1 0 3 RBM7 chr11:114273637 5'GT 114273637 Upstream 62bp
chr11 114273576 114273576 1 + A G COAD 114273589 + 114273569 114273609 41 AGATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATT AGATGTCGGTTTGTCATATCCCCAACATCATGTTGGAAATT < 41bp 1 0.675109324681436 1 0.119529694318771 experiment 0.649781350637128 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273589 chr11:114273576 nonsynonymous SNV 0.976 0 8 hm5C_associated_SNPs_19414 0 0 1 0 3 RBM7 chr11:114273550 3'AG 114273550 Downstream 27bp
chr11 114273576 114273576 1 + A G COAD 114273589 + 114273569 114273609 41 AGATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATT AGATGTCGGTTTGTCATATCCCCAACATCATGTTGGAAATT < 41bp 1 0.675109324681436 1 0.119529694318771 experiment 0.649781350637128 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273589 chr11:114273576 nonsynonymous SNV 0.976 0 8 hm5C_associated_SNPs_19414 0 0 1 0 3 RBM7 chr11:114273554 3'AG 114273554 Downstream 23bp
chr11 114273576 114273576 1 + A G COAD 114273589 + 114273569 114273609 41 AGATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATT AGATGTCGGTTTGTCATATCCCCAACATCATGTTGGAAATT < 41bp 1 0.675109324681436 1 0.119529694318771 experiment 0.649781350637128 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273589 chr11:114273576 nonsynonymous SNV 0.976 0 8 hm5C_associated_SNPs_19414 0 0 1 0 3 RBM7 chr11:114273637 5'GT 114273637 Upstream 62bp
chr11 114273576 114273576 1 + A G COAD 114273590 + 114273570 114273610 41 GATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTC GATGTCGGTTTGTCATATCCCCAACATCATGTTGGAAATTC < 41bp 1 0.319738602323492 1 0.246921896934509 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273590 chr11:114273576 nonsynonymous SNV 0.976 0 7 hm5C_associated_SNPs_19415 0 0 1 0 3 RBM7 chr11:114273550 3'AG 114273550 Downstream 27bp
chr11 114273576 114273576 1 + A G COAD 114273590 + 114273570 114273610 41 GATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTC GATGTCGGTTTGTCATATCCCCAACATCATGTTGGAAATTC < 41bp 1 0.319738602323492 1 0.246921896934509 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273590 chr11:114273576 nonsynonymous SNV 0.976 0 7 hm5C_associated_SNPs_19415 0 0 1 0 3 RBM7 chr11:114273554 3'AG 114273554 Downstream 23bp
chr11 114273576 114273576 1 + A G COAD 114273590 + 114273570 114273610 41 GATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTC GATGTCGGTTTGTCATATCCCCAACATCATGTTGGAAATTC < 41bp 1 0.319738602323492 1 0.246921896934509 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273590 chr11:114273576 nonsynonymous SNV 0.976 0 7 hm5C_associated_SNPs_19415 0 0 1 0 3 RBM7 chr11:114273637 5'GT 114273637 Upstream 62bp
chr11 114273576 114273576 1 + A G COAD 114273591 + 114273571 114273611 41 ATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTCA ATGTCGGTTTGTCATATCCCCAACATCATGTTGGAAATTCA < 41bp 1 0.711820930076237 1 0.25401371717453 experiment 0.576358139847526 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273591 chr11:114273576 nonsynonymous SNV 0.976 0 6 hm5C_associated_SNPs_19416 0 0 1 0 3 RBM7 chr11:114273550 3'AG 114273550 Downstream 27bp
chr11 114273576 114273576 1 + A G COAD 114273591 + 114273571 114273611 41 ATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTCA ATGTCGGTTTGTCATATCCCCAACATCATGTTGGAAATTCA < 41bp 1 0.711820930076237 1 0.25401371717453 experiment 0.576358139847526 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273591 chr11:114273576 nonsynonymous SNV 0.976 0 6 hm5C_associated_SNPs_19416 0 0 1 0 3 RBM7 chr11:114273554 3'AG 114273554 Downstream 23bp
chr11 114273576 114273576 1 + A G COAD 114273591 + 114273571 114273611 41 ATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTCA ATGTCGGTTTGTCATATCCCCAACATCATGTTGGAAATTCA < 41bp 1 0.711820930076237 1 0.25401371717453 experiment 0.576358139847526 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273591 chr11:114273576 nonsynonymous SNV 0.976 0 6 hm5C_associated_SNPs_19416 0 0 1 0 3 RBM7 chr11:114273637 5'GT 114273637 Upstream 62bp
chr11 114273576 114273576 1 + A G COAD 114273594 + 114273574 114273614 41 TCAGTTTGTCATATCCCCAACATCATGTTGGAAATTCAAGC TCGGTTTGTCATATCCCCAACATCATGTTGGAAATTCAAGC < 41bp 1 0.457865523908607 1 0.0931016504764557 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273594 chr11:114273576 nonsynonymous SNV 0.976 0 3 hm5C_associated_SNPs_19417 0 0 1 0 3 RBM7 chr11:114273550 3'AG 114273550 Downstream 27bp
chr11 114273576 114273576 1 + A G COAD 114273594 + 114273574 114273614 41 TCAGTTTGTCATATCCCCAACATCATGTTGGAAATTCAAGC TCGGTTTGTCATATCCCCAACATCATGTTGGAAATTCAAGC < 41bp 1 0.457865523908607 1 0.0931016504764557 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273594 chr11:114273576 nonsynonymous SNV 0.976 0 3 hm5C_associated_SNPs_19417 0 0 1 0 3 RBM7 chr11:114273554 3'AG 114273554 Downstream 23bp
chr11 114273576 114273576 1 + A G COAD 114273594 + 114273574 114273614 41 TCAGTTTGTCATATCCCCAACATCATGTTGGAAATTCAAGC TCGGTTTGTCATATCCCCAACATCATGTTGGAAATTCAAGC < 41bp 1 0.457865523908607 1 0.0931016504764557 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273594 chr11:114273576 nonsynonymous SNV 0.976 0 3 hm5C_associated_SNPs_19417 0 0 1 0 3 RBM7 chr11:114273637 5'GT 114273637 Upstream 62bp
chr20 39797439 39797439 1 + C T COAD 39797451 + 39797431 39797471 41 TACAAGGCCCAGAGGGAGGACGAGCTGACCTTCATCAAGAG TACAAGGCTCAGAGGGAGGACGAGCTGACCTTCATCAAGAG < 41bp 1 0.28721525702328 1 0.5980424284935 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39797451 chr20:39797439 synonymous SNV . 0 9 hm5C_associated_SNPs_19418 0 0 1 0 1 PLCG1 chr20:39797510 5'GT 39797510 Upstream 72bp
chr1 220964909 220964909 1 + A C COAD 220964927 + 220964907 220964947 41 TGACCTGCGATGGTGACACCCTGACTCTCAGTGCAGCCTAC TGCCCTGCGATGGTGACACCCTGACTCTCAGTGCAGCCTAC < 41bp 1 0.463388345614385 1 0.118251293897629 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC1 ENSG00000186205 CDS Human protein_coding chr1:220964927 chr1:220964909 nonsynonymous SNV 0.979 3 3 hm5C_associated_SNPs_19419 0 0 1 0 2 MARC1 chr1:220964833 3'AG 220964833 Downstream 77bp
chr1 220964909 220964909 1 + A C COAD 220964927 + 220964907 220964947 41 TGACCTGCGATGGTGACACCCTGACTCTCAGTGCAGCCTAC TGCCCTGCGATGGTGACACCCTGACTCTCAGTGCAGCCTAC < 41bp 1 0.463388345614385 1 0.118251293897629 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC1 ENSG00000186205 CDS Human protein_coding chr1:220964927 chr1:220964909 nonsynonymous SNV 0.979 3 3 hm5C_associated_SNPs_19419 0 0 1 0 2 MARC1 chr1:220965006 5'GT 220965006 Upstream 98bp
chr11 46747422 46747422 1 + C A COAD 46747436 + 46747416 46747456 41 TCAAGTCACTGTAGCGATGACTCCACGCTCCGAAGGCTCCA TCAAGTAACTGTAGCGATGACTCCACGCTCCGAAGGCTCCA < 41bp 1 0.739438302027747 1 0.962910175323486 experiment 0.521123395944507 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control F2 ENSG00000180210 CDS Human protein_coding chr11:46747436 chr11:46747422 synonymous SNV . 0 7 hm5C_associated_SNPs_19420 0 0 0 0 1 F2 chr11:46747409 3'AG 46747409 Downstream 14bp
chr11 95546134 95546134 1 + C T COAD 95546139 + 95546119 95546159 41 CTTCAAGATAAGATTCGACGCTTGGAACTTGAGAGGATTCA CTTCAAGATAAGATTTGACGCTTGGAACTTGAGAGGATTCA < 41bp 1 0.459065593193087 1 0.0649937689304352 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CEP57 ENSG00000166037 CDS Human protein_coding chr11:95546139 chr11:95546134 stopgain 1.000 1 16 hm5C_associated_SNPs_19421 1 0 1 0 3 CEP57 chr11:95546068 3'AG 95546068 Downstream 67bp
chr11 95546134 95546134 1 + C T COAD 95546139 + 95546119 95546159 41 CTTCAAGATAAGATTCGACGCTTGGAACTTGAGAGGATTCA CTTCAAGATAAGATTTGACGCTTGGAACTTGAGAGGATTCA < 41bp 1 0.459065593193087 1 0.0649937689304352 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CEP57 ENSG00000166037 CDS Human protein_coding chr11:95546139 chr11:95546134 stopgain 1.000 1 16 hm5C_associated_SNPs_19421 1 0 1 0 3 CEP57 chr11:95546096 3'AG 95546096 Downstream 39bp
chr11 95546134 95546134 1 + C T COAD 95546139 + 95546119 95546159 41 CTTCAAGATAAGATTCGACGCTTGGAACTTGAGAGGATTCA CTTCAAGATAAGATTTGACGCTTGGAACTTGAGAGGATTCA < 41bp 1 0.459065593193087 1 0.0649937689304352 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CEP57 ENSG00000166037 CDS Human protein_coding chr11:95546139 chr11:95546134 stopgain 1.000 1 16 hm5C_associated_SNPs_19421 1 0 1 0 3 CEP57 chr11:95546116 3'AG 95546116 Downstream 19bp
chr5 128440938 128440938 1 + C A COAD 128440946 + 128440926 128440966 41 TACCCTAAAGGTCTTGGGAGCACGGTTCAAGAAATTGATTT TACCCTAAAGGTATTGGGAGCACGGTTCAAGAAATTGATTT < 41bp 1 0.602962388956561 1 0.454040825366974 experiment 0.794075222086879 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128440946 chr5:128440938 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_19422 0 0 1 0 1 ISOC1 chr5:128440878 3'AG 128440878 Downstream 61bp
chr3 50257588 50257588 1 + C T COAD 50257570 + 50257550 50257590 41 TTGAGCTTCATCATCATTGACTGGGCCTCAGGGACCAGCCG TTGAGCTTCATCATCATTGACTGGGCCTCAGGGACCAGTCG < 41bp 1 0.581280879631893 1 0.361448287963867 experiment 0.837438240736214 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50257570 chr3:50257588 . . 0 39 hm5C_associated_SNPs_19424 0 0 1 0 1 SLC38A3 chr3:50257505 3'AG 50257505 Downstream 84bp
chr15 59350594 59350594 1 + C T COAD 59350579 + 59350559 59350599 41 TACTGTAGTACCAACCACTTCTGCAAGAATGGAATCACAAG TACTGTAGTACCAACCACTTCTGCAAGAATGGAATTACAAG < 41bp 1 0.552216001219229 1 0.598207116127014 experiment 0.895567997561542 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RNF111 ENSG00000157450 CDS Human protein_coding chr15:59350579 chr15:59350594 nonsynonymous SNV 0.998 2 36 hm5C_associated_SNPs_19425 0 0 1 0 1 RNF111 chr15:59350555 3'AG 59350555 Downstream 40bp
chr9 72003158 72003158 1 + G T COAD 72003140 + 72003120 72003160 41 ACTGGATCTGGCTGCAGTGACTCTGAGGAGAGGCTTGAGAT ACTGGATCTGGCTGCAGTGACTCTGAGGAGAGGCTTGATAT < 41bp 1 0.570501642615228 1 0.349725127220154 experiment 0.858996714769544 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM189A2 ENSG00000135063 CDS Human protein_coding chr9:72003140 chr9:72003158 nonsynonymous SNV 0.031 1 39 hm5C_associated_SNPs_19426 0 0 0 0 1 FAM189A2 chr9:72003074 3'AG 72003074 Downstream 85bp
chr5 64082392 64082392 1 + T G COAD 64082382 + 64082362 64082402 41 TCCTTTTGATGACATCATTCCAAGGGAAATTAAAAGGCTGA TCCTTTTGATGACATCATTCCAAGGGAAATGAAAAGGCTGA < 41bp 1 0.454296141351361 1 0.825393915176392 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64082382 chr5:64082392 nonsynonymous SNV 0.972 1 31 hm5C_associated_SNPs_19427 0 0 1 0 2 CWC27 chr5:64082351 3'AG 64082351 Downstream 42bp
chr5 64082392 64082392 1 + T G COAD 64082382 + 64082362 64082402 41 TCCTTTTGATGACATCATTCCAAGGGAAATTAAAAGGCTGA TCCTTTTGATGACATCATTCCAAGGGAAATGAAAAGGCTGA < 41bp 1 0.454296141351361 1 0.825393915176392 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64082382 chr5:64082392 nonsynonymous SNV 0.972 1 31 hm5C_associated_SNPs_19427 0 0 1 0 2 CWC27 chr5:64082454 5'GT 64082454 Upstream 63bp
chr11 64054336 64054336 1 + A C COAD 64054320 + 64054300 64054340 41 CCCGTCTGCCTGCAGTTCTTCACCTTGACGCTTATGAACCT CCCGTCTGCCTGCAGTTCTTCACCTTGACGCTTATGCACCT < 41bp 1 0.352578046187504 1 0.27825129032135 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPR137 ENSG00000173264 CDS Human protein_coding chr11:64054320 chr11:64054336 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_19428 0 0 1 0 1 GPR137 chr11:64054353 5'GT 64054353 Upstream 18bp
chr16 11066819 11066819 1 + A G COAD 11066834 + 11066814 11066854 41 GCACTACATCCGAGATAAAACTGCTGTTCCTTACTTCTCCA GCACTGCATCCGAGATAAAACTGCTGTTCCTTACTTCTCCA < 41bp 1 0.411952682490639 1 0.0276484787464142 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11066834 chr16:11066819 nonsynonymous SNV 0.999 4 6 hm5C_associated_SNPs_19429 0 0 1 0 2 CLEC16A chr16:11066795 3'AG 11066795 Downstream 25bp
chr16 11066819 11066819 1 + A G COAD 11066834 + 11066814 11066854 41 GCACTACATCCGAGATAAAACTGCTGTTCCTTACTTCTCCA GCACTGCATCCGAGATAAAACTGCTGTTCCTTACTTCTCCA < 41bp 1 0.411952682490639 1 0.0276484787464142 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11066834 chr16:11066819 nonsynonymous SNV 0.999 4 6 hm5C_associated_SNPs_19429 0 0 1 0 2 CLEC16A chr16:11066918 5'GT 11066918 Upstream 100bp
chr11 66238792 66238792 1 + G A COAD 66238806 + 66238786 66238826 41 GCCAACGGGGTGAAGCCAGACGTCATGCACCACATCTCCAC GCCAACAGGGTGAAGCCAGACGTCATGCACCACATCTCCAC < 41bp 1 0.764134177478316 1 0.22414419054985 experiment 0.471731645043368 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PELI3 ENSG00000174516 CDS Human protein_coding chr11:66238806 chr11:66238792 nonsynonymous SNV 0.987 4 7 hm5C_associated_SNPs_19430 0 0 0 0 1 PELI3 chr11:66238713 3'AG 66238713 Downstream 80bp
chr2 100007156 100007156 1 + A C COAD 100007146 + 100007126 100007166 41 AGGCCTCCTGTTACCTCCTCCTATGAAGGAATTACGAGTGA AGGCCTCCTGTTACCTCCTCCTATGAAGGACTTACGAGTGA < 41bp 1 0.326589613275862 1 0.216611117124557 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:100007146 chr2:100007156 nonsynonymous SNV 1.000 0 31 hm5C_associated_SNPs_19431 0 0 1 0 1 EIF5B chr2:100007168 5'GT 100007168 Upstream 13bp
chr1 27630278 27630278 1 + C A COAD 27630272 + 27630252 27630292 41 ACCACGGATATCAAAGAGGCCAATTTCTTTGGCAGGTCCGA ACCACGGATATCAAAGAGGCCAATTTATTTGGCAGGTCCGA < 41bp 1 0.0639708565971758 1 0.148474901914597 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27630272 chr1:27630278 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_19432 0 0 0 1 1 WDTC1 chr1:27630286 5'GT 27630286 Upstream 9bp
chr1 12061554 12061554 1 + T C COAD 12061544 + 12061524 12061564 41 TCCCAGGCCGGGGACCGCATCTTCTTTGTGTCTGCTAAGGA TCCCAGGCCGGGGACCGCATCTTCTTTGTGCCTGCTAAGGA < 41bp 1 0.31657386268396 1 0.0713164508342743 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061544 chr1:12061554 nonsynonymous SNV 0.999 5 31 hm5C_associated_SNPs_19433 0 0 1 0 2 MFN2 chr1:12061458 3'AG 12061458 Downstream 97bp
chr1 12061554 12061554 1 + T C COAD 12061544 + 12061524 12061564 41 TCCCAGGCCGGGGACCGCATCTTCTTTGTGTCTGCTAAGGA TCCCAGGCCGGGGACCGCATCTTCTTTGTGCCTGCTAAGGA < 41bp 1 0.31657386268396 1 0.0713164508342743 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061544 chr1:12061554 nonsynonymous SNV 0.999 5 31 hm5C_associated_SNPs_19433 0 0 1 0 2 MFN2 chr1:12061611 5'GT 12061611 Upstream 58bp
chr15 72855836 72855836 1 + A C COAD 72855834 + 72855814 72855854 41 TTCGCTGCAAATGTGGGCGCCAATTTTGGTAAGCAAGTGAT TTCGCTGCAAATGTGGGCGCCACTTTTGGTAAGCAAGTGAT < 41bp 1 0.0910392318774425 1 0.161845207214355 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARIH1 ENSG00000166233 CDS Human protein_coding chr15:72855834 chr15:72855836 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_19434 0 0 1 0 1 ARIH1 chr15:72855841 5'GT 72855841 Upstream 6bp
chr12 53671311 53671311 1 + A G COAD 53671316 + 53671296 53671336 41 GAGGAATTTGAAGTCAATGACCTGAACTATGAAGATAAACT GAGGAATTTGAAGTCGATGACCTGAACTATGAAGATAAACT < 41bp 1 0.0707197509883705 1 0.0586913228034973 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53671316 chr12:53671311 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_19435 0 0 1 0 1 ESPL1 chr12:53671392 5'GT 53671392 Upstream 82bp
chr4 126337719 126337719 1 + G T COAD 126337729 + 126337709 126337749 41 GAGTAACACAGAGTCTGGATCGGGAAACAAAAGAGCGCTTT GAGTAACACATAGTCTGGATCGGGAAACAAAAGAGCGCTTT < 41bp 1 0.622321446556297 1 0.920305967330933 experiment 0.755357106887407 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126337729 chr4:126337719 nonsynonymous SNV 0.916 2 11 hm5C_associated_SNPs_19436 0 0 1 0 1 FAT4 chr4:126337777 5'GT 126337777 Upstream 59bp
chr17 28754463 28754463 1 + G A COAD 28754477 + 28754457 28754497 41 TGAACCGAAATTTCCCAGACCAGTTTGTTCAGATCACAGAT TGAACCAAAATTTCCCAGACCAGTTTGTTCAGATCACAGAT < 41bp 1 0.122158153942423 1 0.0711123943328857 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28754477 chr17:28754463 nonsynonymous SNV 0.992 4 7 hm5C_associated_SNPs_19437 0 0 0 0 1 CPD chr17:28754409 3'AG 28754409 Downstream 55bp
chr5 6746337 6746337 1 + G T COAD 6746347 + 6746327 6746367 41 TTGCATCCAAGAATTGATGCCCGGAGAGCTGATGAAAACCT TTGCATCCAATAATTGATGCCCGGAGAGCTGATGAAAACCT < 41bp 1 0.378847637846471 1 0.295552372932434 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6746347 chr5:6746337 nonsynonymous SNV 0.999 3 11 hm5C_associated_SNPs_19438 0 0 1 0 1 PAPD7 chr5:6746327 3'AG 6746327 Downstream 11bp
chr1 39775920 39775920 1 + C T COAD 39775933 + 39775913 39775953 41 CTAGCTTCGATCCTCAGCACCAGGGGAGTGCCATCAGATTA CTAGCTTTGATCCTCAGCACCAGGGGAGTGCCATCAGATTA < 41bp 1 0.236849168115583 1 0.74539977312088 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39775933 chr1:39775920 stopgain 0.542 0 8 hm5C_associated_SNPs_19442 0 0 1 0 1 MACF1 chr1:39775917 3'AG 39775917 Downstream 4bp
chr3 39104659 39104659 1 + T C COAD 39104645 + 39104625 39104665 41 CTTTTCACAGCCGGTCGAGACTCTATCATAAGAATATGGAG CTTTTCACAGCCGGTCGAGACTCTATCATAAGAACATGGAG < 41bp 1 0.576342021139748 1 0.919161438941956 experiment 0.847315957720503 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39104645 chr3:39104659 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_19443 0 0 1 0 1 WDR48 chr3:39104681 5'GT 39104681 Upstream 23bp
chr4 146463818 146463818 1 + C T COAD 146463820 + 146463800 146463840 41 TGGACACAAACATGATGGCGCCTCCCCTGCCCTCAGAAATC TGGACACAAACATGATGGTGCCTCCCCTGCCCTCAGAAATC < 41bp 1 0.018871890328085 1 0.0569944977760315 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146463820 chr4:146463818 nonsynonymous SNV 0.973 1 19 hm5C_associated_SNPs_19444 0 0 0 0 2 SMAD1 chr4:146463734 3'AG 146463734 Downstream 85bp
chr4 146463818 146463818 1 + C T COAD 146463820 + 146463800 146463840 41 TGGACACAAACATGATGGCGCCTCCCCTGCCCTCAGAAATC TGGACACAAACATGATGGTGCCTCCCCTGCCCTCAGAAATC < 41bp 1 0.018871890328085 1 0.0569944977760315 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146463820 chr4:146463818 nonsynonymous SNV 0.973 1 19 hm5C_associated_SNPs_19444 0 0 0 0 2 SMAD1 chr4:146463850 5'GT 146463850 Upstream 33bp
chr1 155255670 155255670 1 + G A COAD 155255657 + 155255637 155255677 41 TCTCGTGGTGCGTGAGGGCTCCGTGGGGAGGAAGATGTACT TCTCGTGGTGCGTGAGGGCTCCGTGGGGAGGAAAATGTACT < 41bp 1 0.301458072869858 1 0.322904348373413 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HCN3 ENSG00000143630 CDS Human protein_coding chr1:155255657 chr1:155255670 synonymous SNV . 0 34 hm5C_associated_SNPs_19445 0 0 0 0 1 HCN3 chr1:155255755 5'GT 155255755 Upstream 86bp
chr7 142460364 142460364 1 + T C COAD 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATCA < 41bp 1 0.0397227903326115 1 0.182513356208801 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460364 synonymous SNV . 0 40 hm5C_associated_SNPs_19446 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 83bp
chr7 142460364 142460364 1 + T C COAD 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATCA < 41bp 1 0.0397227903326115 1 0.182513356208801 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460364 synonymous SNV . 0 40 hm5C_associated_SNPs_19446 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 55bp
chr7 142460364 142460364 1 + T C COAD 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATCAC < 41bp 1 0.274928024962448 1 0.489937663078308 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460364 synonymous SNV . 0 39 hm5C_associated_SNPs_19447 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 83bp
chr7 142460364 142460364 1 + T C COAD 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATCAC < 41bp 1 0.274928024962448 1 0.489937663078308 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460364 synonymous SNV . 0 39 hm5C_associated_SNPs_19447 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 55bp
chr7 142460364 142460364 1 + T C COAD 142460348 + 142460328 142460368 41 CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATCACCA < 41bp 1 0.0247478794950498 1 0.0949923396110535 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460348 chr7:142460364 synonymous SNV . 0 37 hm5C_associated_SNPs_19448 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 83bp
chr7 142460364 142460364 1 + T C COAD 142460348 + 142460328 142460368 41 CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATCACCA < 41bp 1 0.0247478794950498 1 0.0949923396110535 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460348 chr7:142460364 synonymous SNV . 0 37 hm5C_associated_SNPs_19448 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 55bp
chr7 142460364 142460364 1 + T C COAD 142460349 + 142460329 142460369 41 CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATCACCAG < 41bp 1 0.270980433197384 1 0.247778505086899 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460349 chr7:142460364 synonymous SNV . 0 36 hm5C_associated_SNPs_19449 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 83bp
chr7 142460364 142460364 1 + T C COAD 142460349 + 142460329 142460369 41 CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATCACCAG < 41bp 1 0.270980433197384 1 0.247778505086899 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460349 chr7:142460364 synonymous SNV . 0 36 hm5C_associated_SNPs_19449 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 55bp
chr7 142460364 142460364 1 + T C COAD 142460352 + 142460332 142460372 41 GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATCACCAGCAA < 41bp 1 0.363265654472155 1 0.551122605800629 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460352 chr7:142460364 synonymous SNV . 0 33 hm5C_associated_SNPs_19450 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 83bp
chr7 142460364 142460364 1 + T C COAD 142460352 + 142460332 142460372 41 GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATCACCAGCAA < 41bp 1 0.363265654472155 1 0.551122605800629 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460352 chr7:142460364 synonymous SNV . 0 33 hm5C_associated_SNPs_19450 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 55bp
chr7 142460364 142460364 1 + T C COAD 142460353 + 142460333 142460373 41 CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC CTAAGTGTGAAGCCTCCTACCCTGGAAAGATCACCAGCAAC < 41bp 1 0.280607419174325 1 0.523404240608215 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460353 chr7:142460364 synonymous SNV . 0 32 hm5C_associated_SNPs_19451 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 83bp
chr7 142460364 142460364 1 + T C COAD 142460353 + 142460333 142460373 41 CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC CTAAGTGTGAAGCCTCCTACCCTGGAAAGATCACCAGCAAC < 41bp 1 0.280607419174325 1 0.523404240608215 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460353 chr7:142460364 synonymous SNV . 0 32 hm5C_associated_SNPs_19451 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 55bp
chr7 142460364 142460364 1 + T C COAD 142460366 + 142460346 142460386 41 CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG CTCCTACCCTGGAAAGATCACCAGCAACATGTTCTGTGTGG < 41bp 1 0.168305226137808 1 0.148340165615082 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460366 chr7:142460364 synonymous SNV . 0 19 hm5C_associated_SNPs_19452 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 83bp
chr7 142460364 142460364 1 + T C COAD 142460366 + 142460346 142460386 41 CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG CTCCTACCCTGGAAAGATCACCAGCAACATGTTCTGTGTGG < 41bp 1 0.168305226137808 1 0.148340165615082 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460366 chr7:142460364 synonymous SNV . 0 19 hm5C_associated_SNPs_19452 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 55bp
chr7 142460364 142460364 1 + T C COAD 142460367 + 142460347 142460387 41 TCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG TCCTACCCTGGAAAGATCACCAGCAACATGTTCTGTGTGGG < 41bp 1 0.558886087241536 1 0.555880486965179 experiment 0.882227825516929 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460367 chr7:142460364 synonymous SNV . 0 18 hm5C_associated_SNPs_19453 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 83bp
chr7 142460364 142460364 1 + T C COAD 142460367 + 142460347 142460387 41 TCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG TCCTACCCTGGAAAGATCACCAGCAACATGTTCTGTGTGGG < 41bp 1 0.558886087241536 1 0.555880486965179 experiment 0.882227825516929 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460367 chr7:142460364 synonymous SNV . 0 18 hm5C_associated_SNPs_19453 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 55bp
chr7 142460364 142460364 1 + T C COAD 142460370 + 142460350 142460390 41 TACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT TACCCTGGAAAGATCACCAGCAACATGTTCTGTGTGGGCTT < 41bp 1 0.484365498735542 1 0.524269998073578 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460370 chr7:142460364 synonymous SNV . 0 15 hm5C_associated_SNPs_19454 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 83bp
chr7 142460364 142460364 1 + T C COAD 142460370 + 142460350 142460390 41 TACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT TACCCTGGAAAGATCACCAGCAACATGTTCTGTGTGGGCTT < 41bp 1 0.484365498735542 1 0.524269998073578 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460370 chr7:142460364 synonymous SNV . 0 15 hm5C_associated_SNPs_19454 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 55bp
chr7 142460364 142460364 1 + T C COAD 142460373 + 142460353 142460393 41 CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT CCTGGAAAGATCACCAGCAACATGTTCTGTGTGGGCTTCCT < 41bp 1 0.263218579021508 1 0.0682689249515533 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460373 chr7:142460364 synonymous SNV . 0 12 hm5C_associated_SNPs_19455 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 83bp
chr7 142460364 142460364 1 + T C COAD 142460373 + 142460353 142460393 41 CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT CCTGGAAAGATCACCAGCAACATGTTCTGTGTGGGCTTCCT < 41bp 1 0.263218579021508 1 0.0682689249515533 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460373 chr7:142460364 synonymous SNV . 0 12 hm5C_associated_SNPs_19455 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 55bp
chr7 142460364 142460364 1 + T C COAD 142460379 + 142460359 142460399 41 AAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG AAGATCACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG < 41bp 1 0.32923412137661 1 0.358394086360931 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460379 chr7:142460364 synonymous SNV . 0 6 hm5C_associated_SNPs_19456 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 83bp
chr7 142460364 142460364 1 + T C COAD 142460379 + 142460359 142460399 41 AAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG AAGATCACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG < 41bp 1 0.32923412137661 1 0.358394086360931 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460379 chr7:142460364 synonymous SNV . 0 6 hm5C_associated_SNPs_19456 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 55bp
chr2 118579619 118579619 1 + T C COAD 118579611 + 118579591 118579631 41 TCAACATCATTGTGGCCACACCAGGCCGTCTGCTGGACCAT TCAACATCATTGTGGCCACACCAGGCCGCCTGCTGGACCAT < 41bp 1 0.544471557385138 1 0.143178582191467 experiment 0.911056885229725 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579611 chr2:118579619 synonymous SNV . 0 29 hm5C_associated_SNPs_19461 0 0 1 0 1 DDX18 chr2:118579637 5'GT 118579637 Upstream 19bp
chr12 57892319 57892319 1 + A C COAD 57892311 + 57892291 57892331 41 GGACTAACCCCCCAGGAGATCTGCGACAAGTACCACATCAT GGACTAACCCCCCAGGAGATCTGCGACACGTACCACATCAT < 41bp 1 0.608133140404908 1 0.291155636310577 experiment 0.783733719190184 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARS ENSG00000166986 CDS Human protein_coding chr12:57892311 chr12:57892319 nonsynonymous SNV 0.969 4 29 hm5C_associated_SNPs_19462 0 0 1 0 1 MARS chr12:57892406 5'GT 57892406 Upstream 88bp
chr6 149691192 149691192 1 + T C COAD 149691182 + 149691162 149691202 41 TTCAGGTTTTACATGACCTGCGACAAAAATTCCCTGAAGTA TTCAGGTTTTACATGACCTGCGACAAAAATCCCCTGAAGTA < 41bp 1 0.571800780560525 1 0.148864388465881 experiment 0.856398438878949 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAB2 ENSG00000055208 CDS Human protein_coding chr6:149691182 chr6:149691192 nonsynonymous SNV 1.000 5 31 hm5C_associated_SNPs_19463 0 0 1 0 1 TAB2 chr6:149691235 5'GT 149691235 Upstream 44bp
chr1 22307592 22307592 1 + G A COAD 22307575 + 22307555 22307595 41 GTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCCCGAGC GTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCCCAAGC < 41bp 1 0.569947548139683 1 0.122711390256882 experiment 0.860104903720633 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307575 chr1:22307592 nonsynonymous SNV 0.479 2 38 hm5C_associated_SNPs_19464 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 62bp
chr1 22307592 22307592 1 + G A COAD 22307575 + 22307555 22307595 41 GTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCCCGAGC GTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCCCAAGC < 41bp 1 0.569947548139683 1 0.122711390256882 experiment 0.860104903720633 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307575 chr1:22307592 nonsynonymous SNV 0.479 2 38 hm5C_associated_SNPs_19464 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 74bp
chr1 22307592 22307592 1 + G A COAD 22307588 + 22307568 22307608 41 GACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT GACCGTGCTGTGAAGGAGGGCCCCAAGCAGGTGATCCCCAT < 41bp 1 0.344613465195194 1 0.15925070643425 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307588 chr1:22307592 nonsynonymous SNV 0.479 2 25 hm5C_associated_SNPs_19465 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 62bp
chr1 22307592 22307592 1 + G A COAD 22307588 + 22307568 22307608 41 GACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT GACCGTGCTGTGAAGGAGGGCCCCAAGCAGGTGATCCCCAT < 41bp 1 0.344613465195194 1 0.15925070643425 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307588 chr1:22307592 nonsynonymous SNV 0.479 2 25 hm5C_associated_SNPs_19465 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 74bp
chr1 22307592 22307592 1 + G A COAD 22307589 + 22307569 22307609 41 ACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC ACCGTGCTGTGAAGGAGGGCCCCAAGCAGGTGATCCCCATC < 41bp 1 0.332295472626908 1 0.243320286273956 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307589 chr1:22307592 nonsynonymous SNV 0.479 2 24 hm5C_associated_SNPs_19466 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 62bp
chr1 22307592 22307592 1 + G A COAD 22307589 + 22307569 22307609 41 ACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC ACCGTGCTGTGAAGGAGGGCCCCAAGCAGGTGATCCCCATC < 41bp 1 0.332295472626908 1 0.243320286273956 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307589 chr1:22307592 nonsynonymous SNV 0.479 2 24 hm5C_associated_SNPs_19466 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 74bp
chr1 22307592 22307592 1 + G A COAD 22307590 + 22307570 22307610 41 CCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA CCGTGCTGTGAAGGAGGGCCCCAAGCAGGTGATCCCCATCA < 41bp 1 0.280554529719657 1 0.0675018131732941 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307590 chr1:22307592 nonsynonymous SNV 0.479 2 23 hm5C_associated_SNPs_19467 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 62bp
chr1 22307592 22307592 1 + G A COAD 22307590 + 22307570 22307610 41 CCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA CCGTGCTGTGAAGGAGGGCCCCAAGCAGGTGATCCCCATCA < 41bp 1 0.280554529719657 1 0.0675018131732941 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307590 chr1:22307592 nonsynonymous SNV 0.479 2 23 hm5C_associated_SNPs_19467 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 74bp
chr1 22307592 22307592 1 + G A COAD 22307591 + 22307571 22307611 41 CGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA CGTGCTGTGAAGGAGGGCCCCAAGCAGGTGATCCCCATCAA < 41bp 1 0.541679029227593 1 0.0930134057998657 experiment 0.916641941544814 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307591 chr1:22307592 nonsynonymous SNV 0.479 2 22 hm5C_associated_SNPs_19468 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 62bp
chr1 22307592 22307592 1 + G A COAD 22307591 + 22307571 22307611 41 CGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA CGTGCTGTGAAGGAGGGCCCCAAGCAGGTGATCCCCATCAA < 41bp 1 0.541679029227593 1 0.0930134057998657 experiment 0.916641941544814 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307591 chr1:22307592 nonsynonymous SNV 0.479 2 22 hm5C_associated_SNPs_19468 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 74bp
chr1 22307592 22307592 1 + G A COAD 22307603 + 22307583 22307623 41 GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCT GAGGGCCCCAAGCAGGTGATCCCCATCAACTCTGGGGACCT < 41bp 1 0.364014989368427 1 0.0581323504447937 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307603 chr1:22307592 nonsynonymous SNV 0.479 2 10 hm5C_associated_SNPs_19469 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 62bp
chr1 22307592 22307592 1 + G A COAD 22307603 + 22307583 22307623 41 GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCT GAGGGCCCCAAGCAGGTGATCCCCATCAACTCTGGGGACCT < 41bp 1 0.364014989368427 1 0.0581323504447937 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307603 chr1:22307592 nonsynonymous SNV 0.479 2 10 hm5C_associated_SNPs_19469 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 74bp
chr1 22307592 22307592 1 + G A COAD 22307604 + 22307584 22307624 41 AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTC AGGGCCCCAAGCAGGTGATCCCCATCAACTCTGGGGACCTC < 41bp 1 0.0688194708473813 1 0.0717503428459167 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307604 chr1:22307592 nonsynonymous SNV 0.479 2 9 hm5C_associated_SNPs_19470 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 62bp
chr1 22307592 22307592 1 + G A COAD 22307604 + 22307584 22307624 41 AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTC AGGGCCCCAAGCAGGTGATCCCCATCAACTCTGGGGACCTC < 41bp 1 0.0688194708473813 1 0.0717503428459167 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307604 chr1:22307592 nonsynonymous SNV 0.479 2 9 hm5C_associated_SNPs_19470 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 74bp
chr1 22307592 22307592 1 + G A COAD 22307605 + 22307585 22307625 41 GGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTCT GGGCCCCAAGCAGGTGATCCCCATCAACTCTGGGGACCTCT < 41bp 1 0.0327977472849822 1 0.121854931116104 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307605 chr1:22307592 nonsynonymous SNV 0.479 2 8 hm5C_associated_SNPs_19471 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 62bp
chr1 22307592 22307592 1 + G A COAD 22307605 + 22307585 22307625 41 GGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTCT GGGCCCCAAGCAGGTGATCCCCATCAACTCTGGGGACCTCT < 41bp 1 0.0327977472849822 1 0.121854931116104 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307605 chr1:22307592 nonsynonymous SNV 0.479 2 8 hm5C_associated_SNPs_19471 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 74bp
chr1 22307592 22307592 1 + G A COAD 22307606 + 22307586 22307626 41 GGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTCTT GGCCCCAAGCAGGTGATCCCCATCAACTCTGGGGACCTCTT < 41bp 1 0.314395344756747 1 0.340014010667801 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307606 chr1:22307592 nonsynonymous SNV 0.479 2 7 hm5C_associated_SNPs_19472 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 62bp
chr1 22307592 22307592 1 + G A COAD 22307606 + 22307586 22307626 41 GGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTCTT GGCCCCAAGCAGGTGATCCCCATCAACTCTGGGGACCTCTT < 41bp 1 0.314395344756747 1 0.340014010667801 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307606 chr1:22307592 nonsynonymous SNV 0.479 2 7 hm5C_associated_SNPs_19472 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 74bp
chr1 22307592 22307592 1 + G A COAD 22307612 + 22307592 22307632 41 GAGCAGGTGATCCCCATCAACTCTGGGGACCTCTTTGTGCA AAGCAGGTGATCCCCATCAACTCTGGGGACCTCTTTGTGCA < 41bp 1 0.527070713893492 1 0.712099254131317 experiment 0.945858572213016 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307612 chr1:22307592 nonsynonymous SNV 0.479 2 1 hm5C_associated_SNPs_19473 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 62bp
chr1 22307592 22307592 1 + G A COAD 22307612 + 22307592 22307632 41 GAGCAGGTGATCCCCATCAACTCTGGGGACCTCTTTGTGCA AAGCAGGTGATCCCCATCAACTCTGGGGACCTCTTTGTGCA < 41bp 1 0.527070713893492 1 0.712099254131317 experiment 0.945858572213016 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307612 chr1:22307592 nonsynonymous SNV 0.479 2 1 hm5C_associated_SNPs_19473 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 74bp
chr3 126736356 126736356 1 + G A COAD 126736355 + 126736335 126736375 41 GCCCACCAGAGCTGGGGGAGCGGCCGGATGAGCTGGGCTTC GCCCACCAGAGCTGGGGGAGCAGCCGGATGAGCTGGGCTTC < 41bp 1 0.332063942315267 1 0.86019241809845 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126736355 chr3:126736356 nonsynonymous SNV 0.825 1 22 hm5C_associated_SNPs_19474 0 0 1 0 1 PLXNA1 chr3:126736268 3'AG 126736268 Downstream 89bp
chr2 170804118 170804118 1 + A T COAD 170804126 + 170804106 170804146 41 TTAGTGTCAAACATGCGACACTTTATAAACTATGTTAGAGT TTAGTGTCAAACTTGCGACACTTTATAAACTATGTTAGAGT < 41bp 1 0.0730556047090031 1 0.0820217132568359 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBR3 ENSG00000144357 CDS Human protein_coding chr2:170804126 chr2:170804118 nonsynonymous SNV 0.999 0 13 hm5C_associated_SNPs_19475 0 0 0 1 1 UBR3 chr2:170804052 3'AG 170804052 Downstream 67bp
chr7 150725664 150725664 1 + C T COAD 150725672 + 150725652 150725692 41 GCAGGCTGCTACCGCCCCTCCGCTTCCAGACATTCTCAGCT GCAGGCTGCTACTGCCCCTCCGCTTCCAGACATTCTCAGCT < 41bp 1 0.133790267126984 1 0.319047689437866 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150725672 chr7:150725664 nonsynonymous SNV 0.001 1 13 hm5C_associated_SNPs_19476 0 0 1 0 1 ABCB8 chr7:150725697 5'GT 150725697 Upstream 34bp
chr17 71239086 71239086 1 + C T COAD 71239105 + 71239085 71239125 41 ACGATGCTCTTCACAGGATACTTCGTCCTGTGTTGTAGCTG ATGATGCTCTTCACAGGATACTTCGTCCTGTGTTGTAGCTG < 41bp 1 0.36517298116137 1 0.0284791886806488 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71239105 chr17:71239086 nonsynonymous SNV 0.812 3 2 hm5C_associated_SNPs_19477 0 0 1 0 2 C17orf80 chr17:71239035 3'AG 71239035 Downstream 52bp
chr17 71239086 71239086 1 + C T COAD 71239105 + 71239085 71239125 41 ACGATGCTCTTCACAGGATACTTCGTCCTGTGTTGTAGCTG ATGATGCTCTTCACAGGATACTTCGTCCTGTGTTGTAGCTG < 41bp 1 0.36517298116137 1 0.0284791886806488 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71239105 chr17:71239086 nonsynonymous SNV 0.812 3 2 hm5C_associated_SNPs_19477 0 0 1 0 2 C17orf80 chr17:71239142 5'GT 71239142 Upstream 57bp
chr12 6618894 6618894 1 + G A COAD 6618914 + 6618894 6618934 41 GCCTTTCGAGCTCAGGGGCCCCTGGCTATGCTGCAGCACTT ACCTTTCGAGCTCAGGGGCCCCTGGCTATGCTGCAGCACTT < 41bp 1 0.126159840663052 1 0.130006164312363 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6618914 chr12:6618894 nonsynonymous SNV 0.993 1 1 hm5C_associated_SNPs_19478 0 0 1 0 2 NCAPD2 chr12:6618883 3'AG 6618883 Downstream 12bp
chr12 6618894 6618894 1 + G A COAD 6618914 + 6618894 6618934 41 GCCTTTCGAGCTCAGGGGCCCCTGGCTATGCTGCAGCACTT ACCTTTCGAGCTCAGGGGCCCCTGGCTATGCTGCAGCACTT < 41bp 1 0.126159840663052 1 0.130006164312363 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6618914 chr12:6618894 nonsynonymous SNV 0.993 1 1 hm5C_associated_SNPs_19478 0 0 1 0 2 NCAPD2 chr12:6618958 5'GT 6618958 Upstream 65bp
chr7 155532685 155532685 1 + C T COAD 155532698 + 155532678 155532718 41 CAGCAGCCGGATGCAGTGCCCCCAGCGCCAGGGGCTCCGGC CAGCAGCTGGATGCAGTGCCCCCAGCGCCAGGGGCTCCGGC < 41bp 1 0.300375792304171 1 0.320761442184448 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM33 ENSG00000184863 CDS Human protein_coding chr7:155532698 chr7:155532685 nonsynonymous SNV 0.880 4 8 hm5C_associated_SNPs_19479 0 0 1 0 1 RBM33 chr7:155532720 5'GT 155532720 Upstream 36bp
chr22 32445969 32445969 1 + T C COAD 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGGACTGTTGGAGGCTTCCTCCTGGCAGGCCGAAGTATGGT < 41bp 1 0.281131398267245 1 0.410694390535355 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445969 nonsynonymous SNV 0.999 3 19 hm5C_associated_SNPs_19481 0 0 0 0 2 SLC5A1 chr22:32445930 3'AG 32445930 Downstream 40bp
chr22 32445969 32445969 1 + T C COAD 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGGACTGTTGGAGGCTTCCTCCTGGCAGGCCGAAGTATGGT < 41bp 1 0.281131398267245 1 0.410694390535355 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445969 nonsynonymous SNV 0.999 3 19 hm5C_associated_SNPs_19481 0 0 0 0 2 SLC5A1 chr22:32446001 5'GT 32446001 Upstream 33bp
chr9 117063988 117063988 1 + C A COAD 117063993 + 117063973 117064013 41 CCCCAGAGGGCGGCCCGGCCCCCCGGTAGGTAACTGAGTGC CCCCAGAGGGCGGCCAGGCCCCCCGGTAGGTAACTGAGTGC < 41bp 1 0.408132368821325 1 0.220725566148758 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117063993 chr9:117063988 synonymous SNV . 0 16 hm5C_associated_SNPs_19482 0 0 1 0 1 COL27A1 chr9:117063997 5'GT 117063997 Upstream 10bp
chr16 57714236 57714236 1 + G A COAD 57714235 + 57714215 57714255 41 GAGGTCAGACCTGAGGGGACCGTGTGCTGCTGTGACCACCT GAGGTCAGACCTGAGGGGACCATGTGCTGCTGTGACCACCT < 41bp 1 0.319141341760212 1 0.10656726360321 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714235 chr16:57714236 nonsynonymous SNV 0.007 3 22 hm5C_associated_SNPs_19483 0 0 0 0 2 ADGRG3 chr16:57714177 3'AG 57714177 Downstream 60bp
chr16 57714236 57714236 1 + G A COAD 57714235 + 57714215 57714255 41 GAGGTCAGACCTGAGGGGACCGTGTGCTGCTGTGACCACCT GAGGTCAGACCTGAGGGGACCATGTGCTGCTGTGACCACCT < 41bp 1 0.319141341760212 1 0.10656726360321 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714235 chr16:57714236 nonsynonymous SNV 0.007 3 22 hm5C_associated_SNPs_19483 0 0 0 0 2 ADGRG3 chr16:57714277 5'GT 57714277 Upstream 42bp
chr17 40840916 40840916 1 + A T COAD 40840909 + 40840889 40840929 41 TCCAGGTTGTCCCAAGCCAGCCAGTCGATGGGACTGCCACT TCCAGGTTGTCCCAAGCCAGCCAGTCGTTGGGACTGCCACT < 41bp 1 0.146213843745973 1 0.0960389077663422 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40840909 chr17:40840916 synonymous SNV . 0 28 hm5C_associated_SNPs_19484 0 0 0 0 1 CNTNAP1 chr17:40840894 3'AG 40840894 Downstream 23bp
chr15 101448629 101448629 1 + G A COAD 101448616 + 101448596 101448636 41 CTTCCATTCTTTTCTAGGATCAACTGCTACAACGCCCTCTA CTTCCATTCTTTTCTAGGATCAACTGCTACAACACCCTCTA < 41bp 1 0.325845069978609 1 0.0750451683998108 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101448616 chr15:101448629 nonsynonymous SNV 0.223 3 34 hm5C_associated_SNPs_19485 0 0 0 0 2 ALDH1A3 chr15:101448613 3'AG 101448613 Downstream 17bp
chr15 101448629 101448629 1 + G A COAD 101448616 + 101448596 101448636 41 CTTCCATTCTTTTCTAGGATCAACTGCTACAACGCCCTCTA CTTCCATTCTTTTCTAGGATCAACTGCTACAACACCCTCTA < 41bp 1 0.325845069978609 1 0.0750451683998108 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101448616 chr15:101448629 nonsynonymous SNV 0.223 3 34 hm5C_associated_SNPs_19485 0 0 0 0 2 ALDH1A3 chr15:101448687 5'GT 101448687 Upstream 59bp
chr14 71434934 71434934 1 + G A COAD 71434922 + 71434902 71434942 41 GTCACGTTTTCAGATTGGATCTGGTTCCTCGCGTCTTGGAA GTCACGTTTTCAGATTGGATCTGGTTCCTCGCATCTTGGAA < 41bp 1 0.15515746546452 1 0.403951704502106 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71434922 chr14:71434934 nonsynonymous SNV 0.998 4 33 hm5C_associated_SNPs_19486 0 0 1 0 2 PCNX1 chr14:71434915 3'AG 71434915 Downstream 20bp
chr14 71434934 71434934 1 + G A COAD 71434922 + 71434902 71434942 41 GTCACGTTTTCAGATTGGATCTGGTTCCTCGCGTCTTGGAA GTCACGTTTTCAGATTGGATCTGGTTCCTCGCATCTTGGAA < 41bp 1 0.15515746546452 1 0.403951704502106 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71434922 chr14:71434934 nonsynonymous SNV 0.998 4 33 hm5C_associated_SNPs_19486 0 0 1 0 2 PCNX1 chr14:71434960 5'GT 71434960 Upstream 27bp
chr17 47119662 47119662 1 + G A COAD 47119678 + 47119658 47119698 41 CATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGA CATCAAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGA < 41bp 1 0.124611040691689 1 0.2184057533741 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119678 chr17:47119662 nonsynonymous SNV 0.995 3 5 hm5C_associated_SNPs_19487 0 0 1 0 1 IGF2BP1 chr17:47119604 3'AG 47119604 Downstream 59bp
chr17 47119662 47119662 1 + G A COAD 47119679 + 47119659 47119699 41 ATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGAA ATCAAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGAA < 41bp 1 0.338444754269074 1 0.296951651573181 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119679 chr17:47119662 nonsynonymous SNV 0.995 3 4 hm5C_associated_SNPs_19488 0 0 1 0 1 IGF2BP1 chr17:47119604 3'AG 47119604 Downstream 59bp
chr19 18543839 18543839 1 + G A COAD 18543840 + 18543820 18543860 41 GAACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTG GAACCCCATCGGGCAGGGCACCGGCAGGGCTAATGTGAGTG < 41bp 1 0.172299327982922 1 0.148181319236755 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543840 chr19:18543839 nonsynonymous SNV 0.136 0 20 hm5C_associated_SNPs_19493 0 0 1 0 2 SSBP4 chr19:18543783 3'AG 18543783 Downstream 57bp
chr19 18543839 18543839 1 + G A COAD 18543840 + 18543820 18543860 41 GAACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTG GAACCCCATCGGGCAGGGCACCGGCAGGGCTAATGTGAGTG < 41bp 1 0.172299327982922 1 0.148181319236755 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543840 chr19:18543839 nonsynonymous SNV 0.136 0 20 hm5C_associated_SNPs_19493 0 0 1 0 2 SSBP4 chr19:18543853 5'GT 18543853 Upstream 15bp
chr19 18543839 18543839 1 + G A COAD 18543841 + 18543821 18543861 41 AACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTGG AACCCCATCGGGCAGGGCACCGGCAGGGCTAATGTGAGTGG < 41bp 1 0.732077266159542 1 0.486918330192566 experiment 0.535845467680915 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543841 chr19:18543839 nonsynonymous SNV 0.136 0 19 hm5C_associated_SNPs_19494 0 0 1 0 2 SSBP4 chr19:18543783 3'AG 18543783 Downstream 57bp
chr19 18543839 18543839 1 + G A COAD 18543841 + 18543821 18543861 41 AACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTGG AACCCCATCGGGCAGGGCACCGGCAGGGCTAATGTGAGTGG < 41bp 1 0.732077266159542 1 0.486918330192566 experiment 0.535845467680915 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543841 chr19:18543839 nonsynonymous SNV 0.136 0 19 hm5C_associated_SNPs_19494 0 0 1 0 2 SSBP4 chr19:18543853 5'GT 18543853 Upstream 15bp
chr5 102345565 102345565 1 + C T COAD 102345555 + 102345535 102345575 41 GGGGAAATTATAGACATCTTCAAGCCAGTGCGCAAGGTATT GGGGAAATTATAGACATCTTCAAGCCAGTGTGCAAGGTATT < 41bp 1 0.211847969336389 1 0.26028910279274 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PAM ENSG00000145730 CDS Human protein_coding chr5:102345555 chr5:102345565 nonsynonymous SNV 0.902 4 31 hm5C_associated_SNPs_19496 0 0 0 0 1 PAM chr5:102345570 5'GT 102345570 Upstream 6bp
chr1 110171400 110171400 1 + C T COAD 110171392 + 110171372 110171412 41 CATGCACCGCGTGCACTCCCCCAACGTGCGCTGGCTGGTGC CATGCACCGCGTGCACTCCCCCAACGTGTGCTGGCTGGTGC < 41bp 1 0.216588543609584 1 0.378523826599121 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110171392 chr1:110171400 nonsynonymous SNV 1.000 5 29 hm5C_associated_SNPs_19497 0 0 0 0 1 AMPD2 chr1:110171428 5'GT 110171428 Upstream 29bp
chr20 42341721 42341721 1 + C T COAD 42341738 + 42341718 42341758 41 TGTCCACACTGCCCAAGTCTCTATCCTTGGTAAGGCTTCTG TGTTCACACTGCCCAAGTCTCTATCCTTGGTAAGGCTTCTG < 41bp 1 0.0876228817810876 1 0.110028773546219 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42341738 chr20:42341721 nonsynonymous SNV 0.781 0 4 hm5C_associated_SNPs_19498 0 0 1 0 2 MYBL2 chr20:42341642 3'AG 42341642 Downstream 80bp
chr20 42341721 42341721 1 + C T COAD 42341738 + 42341718 42341758 41 TGTCCACACTGCCCAAGTCTCTATCCTTGGTAAGGCTTCTG TGTTCACACTGCCCAAGTCTCTATCCTTGGTAAGGCTTCTG < 41bp 1 0.0876228817810876 1 0.110028773546219 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42341738 chr20:42341721 nonsynonymous SNV 0.781 0 4 hm5C_associated_SNPs_19498 0 0 1 0 2 MYBL2 chr20:42341746 5'GT 42341746 Upstream 26bp
chr11 44092823 44092823 1 + C T COAD 44092826 + 44092806 44092846 41 GGCATCATTAACTTGGGCACCAGTGAGAACAAACTCTGCTT GGCATCATTAACTTGGGTACCAGTGAGAACAAACTCTGCTT < 41bp 1 0.486265038557209 1 0.655535638332367 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACCS ENSG00000110455 CDS Human protein_coding chr11:44092826 chr11:44092823 synonymous SNV . 0 18 hm5C_associated_SNPs_19499 0 0 1 0 2 ACCS chr11:44092806 3'AG 44092806 Downstream 18bp
chr11 44092823 44092823 1 + C T COAD 44092826 + 44092806 44092846 41 GGCATCATTAACTTGGGCACCAGTGAGAACAAACTCTGCTT GGCATCATTAACTTGGGTACCAGTGAGAACAAACTCTGCTT < 41bp 1 0.486265038557209 1 0.655535638332367 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACCS ENSG00000110455 CDS Human protein_coding chr11:44092826 chr11:44092823 synonymous SNV . 0 18 hm5C_associated_SNPs_19499 0 0 1 0 2 ACCS chr11:44092865 5'GT 44092865 Upstream 43bp
chr5 10411478 10411478 1 + A G COAD 10411473 + 10411453 10411493 41 ATTCTTATTTATTGGGAGACCAGGAAGAAAATGAAAACAGT ATTCTTATTTATTGGGAGACCAGGAGGAAAATGAAAACAGT < 41bp 1 0.673420865754575 1 0.712770342826843 experiment 0.653158268490849 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10411473 chr5:10411478 synonymous SNV . 0 26 hm5C_associated_SNPs_19500 0 0 1 0 1 MARCH6 chr5:10411445 3'AG 10411445 Downstream 34bp
chr19 12734580 12734580 1 + T C COAD 12734581 + 12734561 12734601 41 GTGGGCTCTGCTGGCTCCTTCACAGAAGAAACTCTACAGAG GTGGGCTCTGCTGGCTCCTCCACAGAAGAAACTCTACAGAG < 41bp 1 0.599528875486703 1 0.730029225349426 experiment 0.800942249026594 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF791 ENSG00000173875 CDS Human protein_coding chr19:12734581 chr19:12734580 nonsynonymous SNV 0.973 3 20 hm5C_associated_SNPs_19501 0 0 1 0 2 ZNF791 chr19:12734514 3'AG 12734514 Downstream 67bp
chr19 12734580 12734580 1 + T C COAD 12734581 + 12734561 12734601 41 GTGGGCTCTGCTGGCTCCTTCACAGAAGAAACTCTACAGAG GTGGGCTCTGCTGGCTCCTCCACAGAAGAAACTCTACAGAG < 41bp 1 0.599528875486703 1 0.730029225349426 experiment 0.800942249026594 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF791 ENSG00000173875 CDS Human protein_coding chr19:12734581 chr19:12734580 nonsynonymous SNV 0.973 3 20 hm5C_associated_SNPs_19501 0 0 1 0 2 ZNF791 chr19:12734640 5'GT 12734640 Upstream 61bp
chr11 985532 985532 1 + G A COAD 985545 + 985525 985565 41 CCAACGCGAAGAATGCCGTGCTCTTCGAGGCCATCAGCTTA CCAACGCAAAGAATGCCGTGCTCTTCGAGGCCATCAGCTTA < 41bp 1 0.0480101828036929 1 0.0590404570102692 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:985545 chr11:985532 synonymous SNV . 0 8 hm5C_associated_SNPs_19503 0 0 1 0 2 AP2A2 chr11:985435 3'AG 985435 Downstream 98bp
chr11 985532 985532 1 + G A COAD 985545 + 985525 985565 41 CCAACGCGAAGAATGCCGTGCTCTTCGAGGCCATCAGCTTA CCAACGCAAAGAATGCCGTGCTCTTCGAGGCCATCAGCTTA < 41bp 1 0.0480101828036929 1 0.0590404570102692 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:985545 chr11:985532 synonymous SNV . 0 8 hm5C_associated_SNPs_19503 0 0 1 0 2 AP2A2 chr11:985582 5'GT 985582 Upstream 51bp
chr5 172386920 172386920 1 + G A COAD 172386906 + 172386886 172386926 41 AATCCCTTCGTTACCTCGGACCGCAGTAAAAACCGCAAACG AATCCCTTCGTTACCTCGGACCGCAGTAAAAACCACAAACG < 41bp 1 0.630349822278422 1 0.272429913282394 experiment 0.739300355443155 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL26L1 ENSG00000037241 CDS Human protein_coding chr5:172386906 chr5:172386920 nonsynonymous SNV 0.708 1 35 hm5C_associated_SNPs_19504 0 0 1 0 1 RPL26L1 chr5:172386868 3'AG 172386868 Downstream 53bp
chr12 53516946 53516946 1 + T C COAD 53516960 + 53516940 53516980 41 TTCTGCTTCGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT TTCTGCCTCGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT < 41bp 1 0.144119677878003 1 0.0625842809677124 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53516960 chr12:53516946 nonsynonymous SNV 0.994 1 7 hm5C_associated_SNPs_19505 0 0 0 0 2 SOAT2 chr12:53516865 3'AG 53516865 Downstream 82bp
chr12 53516946 53516946 1 + T C COAD 53516960 + 53516940 53516980 41 TTCTGCTTCGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT TTCTGCCTCGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT < 41bp 1 0.144119677878003 1 0.0625842809677124 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53516960 chr12:53516946 nonsynonymous SNV 0.994 1 7 hm5C_associated_SNPs_19505 0 0 0 0 2 SOAT2 chr12:53517000 5'GT 53517000 Upstream 55bp
chr20 61450603 61450603 1 + G A COAD 61450587 + 61450567 61450607 41 TGCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAAC TGCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGAAAAC < 41bp 1 0.32623567035839 1 0.092151939868927 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450587 chr20:61450603 synonymous SNV . 0 37 hm5C_associated_SNPs_19506 0 0 1 0 2 COL9A3 chr20:61450574 3'AG 61450574 Downstream 30bp
chr20 61450603 61450603 1 + G A COAD 61450587 + 61450567 61450607 41 TGCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAAC TGCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGAAAAC < 41bp 1 0.32623567035839 1 0.092151939868927 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450587 chr20:61450603 synonymous SNV . 0 37 hm5C_associated_SNPs_19506 0 0 1 0 2 COL9A3 chr20:61450645 5'GT 61450645 Upstream 43bp
chr20 61450603 61450603 1 + G A COAD 61450588 + 61450568 61450608 41 GCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAACC GCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGAAAACC < 41bp 1 0.175503594585563 1 0.237881541252136 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450588 chr20:61450603 synonymous SNV . 0 36 hm5C_associated_SNPs_19507 0 0 1 0 2 COL9A3 chr20:61450574 3'AG 61450574 Downstream 30bp
chr20 61450603 61450603 1 + G A COAD 61450588 + 61450568 61450608 41 GCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAACC GCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGAAAACC < 41bp 1 0.175503594585563 1 0.237881541252136 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450588 chr20:61450603 synonymous SNV . 0 36 hm5C_associated_SNPs_19507 0 0 1 0 2 COL9A3 chr20:61450645 5'GT 61450645 Upstream 43bp
chr17 48156857 48156857 1 + G C COAD 48156868 + 48156848 48156888 41 ATCCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCTGGCT ATCCAGGGGCAGGCCAGGGCCCCCCACCTGTCACTCTGGCT < 41bp 1 0.0590874771437347 1 0.239337712526321 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48156868 chr17:48156857 nonsynonymous SNV 0.999 0 10 hm5C_associated_SNPs_19508 0 0 0 0 2 ITGA3 chr17:48156799 3'AG 48156799 Downstream 59bp
chr17 48156857 48156857 1 + G C COAD 48156868 + 48156848 48156888 41 ATCCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCTGGCT ATCCAGGGGCAGGCCAGGGCCCCCCACCTGTCACTCTGGCT < 41bp 1 0.0590874771437347 1 0.239337712526321 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48156868 chr17:48156857 nonsynonymous SNV 0.999 0 10 hm5C_associated_SNPs_19508 0 0 0 0 2 ITGA3 chr17:48156921 5'GT 48156921 Upstream 65bp
chr17 48156857 48156857 1 + G C COAD 48156870 + 48156850 48156890 41 CCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCTGGCTGC CCAGGGGCAGGCCAGGGCCCCCCACCTGTCACTCTGGCTGC < 41bp 1 0.0980145218235696 1 0.116953521966934 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48156870 chr17:48156857 nonsynonymous SNV 0.999 0 8 hm5C_associated_SNPs_19509 0 0 0 0 2 ITGA3 chr17:48156799 3'AG 48156799 Downstream 59bp
chr17 48156857 48156857 1 + G C COAD 48156870 + 48156850 48156890 41 CCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCTGGCTGC CCAGGGGCAGGCCAGGGCCCCCCACCTGTCACTCTGGCTGC < 41bp 1 0.0980145218235696 1 0.116953521966934 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48156870 chr17:48156857 nonsynonymous SNV 0.999 0 8 hm5C_associated_SNPs_19509 0 0 0 0 2 ITGA3 chr17:48156921 5'GT 48156921 Upstream 65bp
chr12 27788002 27788002 1 + C A COAD 27788020 + 27788000 27788040 41 CCCAGATTCAACAGCAGAAACGCTTGTTGAATGGCTTCAGA CCAAGATTCAACAGCAGAAACGCTTGTTGAATGGCTTCAGA < 41bp 1 0.315873273532157 1 0.200463116168976 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27788020 chr12:27788002 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_19510 0 0 1 0 1 PPFIBP1 chr12:27788048 5'GT 27788048 Upstream 47bp
chr7 128407566 128407566 1 + C T COAD 128407572 + 128407552 128407592 41 GGGTAAAGACAGAGCGAGAGCAGTTTGTTGAGTTTCGGGAT GGGTAAAGACAGAGTGAGAGCAGTTTGTTGAGTTTCGGGAT < 41bp 1 0.471077694695644 1 0.186092525720596 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALU ENSG00000128595 CDS Human protein_coding chr7:128407572 chr7:128407566 stopgain 0.998 1 15 hm5C_associated_SNPs_19513 0 0 1 0 1 CALU chr7:128407510 3'AG 128407510 Downstream 57bp
chr11 95561127 95561127 1 + G A COAD 95561126 + 95561106 95561146 41 GTAACACCTCCCTCCTCCAACGGTATTAATGAGGAGTTGTC GTAACACCTCCCTCCTCCAACAGTATTAATGAGGAGTTGTC < 41bp 1 0.594105513999683 1 0.142979264259338 experiment 0.811788972000633 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP57 ENSG00000166037 CDS Human protein_coding chr11:95561126 chr11:95561127 nonsynonymous SNV 0.049 0 22 hm5C_associated_SNPs_19514 0 0 1 0 1 CEP57 chr11:95561191 5'GT 95561191 Upstream 65bp
chr18 21098870 21098870 1 + G A COAD 21098888 + 21098868 21098908 41 ATGTTCTCTTCTTGAGGCATCATTCTCGGACCTCCAACAGC ATATTCTCTTCTTGAGGCATCATTCTCGGACCTCCAACAGC < 41bp 1 0.0625996601961816 1 0.0533639192581177 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21098888 chr18:21098870 nonsynonymous SNV 0.828 0 3 hm5C_associated_SNPs_19515 0 0 1 0 2 C18orf8 chr18:21098854 3'AG 21098854 Downstream 17bp
chr18 21098870 21098870 1 + G A COAD 21098888 + 21098868 21098908 41 ATGTTCTCTTCTTGAGGCATCATTCTCGGACCTCCAACAGC ATATTCTCTTCTTGAGGCATCATTCTCGGACCTCCAACAGC < 41bp 1 0.0625996601961816 1 0.0533639192581177 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21098888 chr18:21098870 nonsynonymous SNV 0.828 0 3 hm5C_associated_SNPs_19515 0 0 1 0 2 C18orf8 chr18:21098943 5'GT 21098943 Upstream 74bp
chr19 2343237 2343237 1 + G A COAD 2343242 + 2343222 2343262 41 CTCCAGGATGCCCTGGGCATCGCCTTCTGCCTCTACATGCT CTCCAGGATGCCCTGAGCATCGCCTTCTGCCTCTACATGCT < 41bp 1 0.350049273928795 1 0.0768775045871735 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPPL2B ENSG00000005206 ncRNA_exonic Human protein_coding chr19:2343242 chr19:2343237 . 0.988 3 16 hm5C_associated_SNPs_19516 0 0 1 0 2 SPPL2B chr19:2343209 3'AG 2343209 Downstream 29bp
chr19 2343237 2343237 1 + G A COAD 2343242 + 2343222 2343262 41 CTCCAGGATGCCCTGGGCATCGCCTTCTGCCTCTACATGCT CTCCAGGATGCCCTGAGCATCGCCTTCTGCCTCTACATGCT < 41bp 1 0.350049273928795 1 0.0768775045871735 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPPL2B ENSG00000005206 ncRNA_exonic Human protein_coding chr19:2343242 chr19:2343237 . 0.988 3 16 hm5C_associated_SNPs_19516 0 0 1 0 2 SPPL2B chr19:2343290 5'GT 2343290 Upstream 54bp
chr19 41239114 41239114 1 + C T COAD 41239094 + 41239074 41239114 41 GGAAGAGGAGCTAGTGAAGGCACGGGAACGTCCCCGTCCCC GGAAGAGGAGCTAGTGAAGGCACGGGAACGTCCCCGTCCCT < 41bp 1 0.761831380459457 1 0.729471921920776 experiment 0.476337239081087 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITPKC ENSG00000086544 CDS Human protein_coding chr19:41239094 chr19:41239114 nonsynonymous SNV 0.965 4 41 hm5C_associated_SNPs_19517 0 0 1 0 1 ITPKC chr19:41239065 3'AG 41239065 Downstream 50bp
chr12 110456190 110456190 1 + C T COAD 110456173 + 110456153 110456193 41 CCTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATC CCTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGTATC < 41bp 1 0.380719438618989 1 0.605301380157471 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110456173 chr12:110456190 synonymous SNV . 0 38 hm5C_associated_SNPs_19518 0 0 1 1 1 ANKRD13A chr12:110456150 3'AG 110456150 Downstream 41bp
chr12 110456190 110456190 1 + C T COAD 110456174 + 110456154 110456194 41 CTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATCT CTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGTATCT < 41bp 1 0.311366857362149 1 0.151655048131943 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110456174 chr12:110456190 synonymous SNV . 0 37 hm5C_associated_SNPs_19519 0 0 1 1 1 ANKRD13A chr12:110456150 3'AG 110456150 Downstream 41bp
chr5 122154692 122154692 1 + T C COAD 122154694 + 122154674 122154714 41 TCAGAACTACTTAGTGACTACATTCGTCTTATTGCTGCAGT TCAGAACTACTTAGTGACCACATTCGTCTTATTGCTGCAGT < 41bp 1 0.0519121622772961 1 0.106340914964676 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNX2 ENSG00000205302 CDS Human protein_coding chr5:122154694 chr5:122154692 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_19521 0 0 1 0 1 SNX2 chr5:122154718 5'GT 122154718 Upstream 27bp
chr2 228162516 228162516 1 + G A COAD 228162527 + 228162507 228162547 41 GTCTGCCCGGTGCAATTATCCCTGGCCAGACAGGAAATCGT GTCTGCCCGATGCAATTATCCCTGGCCAGACAGGAAATCGT < 41bp 1 0.13152570388228 1 0.107028275728226 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228162527 chr2:228162516 nonsynonymous SNV 0.385 5 10 hm5C_associated_SNPs_19522 0 0 0 0 1 COL4A3 chr2:228162575 5'GT 228162575 Upstream 60bp
chr1 28600553 28600553 1 + G A COAD 28600565 + 28600545 28600585 41 CCTCAGCTGACATCCTGGAGCCCTCTCCACACCCAGACATG CCTCAGCTAACATCCTGGAGCCCTCTCCACACCCAGACATG < 41bp 1 0.018457690670957 1 0.0191808342933655 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SESN2 ENSG00000130766 CDS Human protein_coding chr1:28600565 chr1:28600553 nonsynonymous SNV 0.252 3 9 hm5C_associated_SNPs_19523 0 0 1 0 1 SESN2 chr1:28600551 3'AG 28600551 Downstream 3bp
chr17 16329474 16329474 1 + C A COAD 16329457 + 16329437 16329477 41 GAGTTTTCAGGACTGAGCCACCTTTCCCGAAAGTTCACCGA GAGTTTTCAGGACTGAGCCACCTTTCCCGAAAGTTCAACGA < 41bp 1 0.00835955864033064 1 0.0494561791419983 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16329457 chr17:16329474 nonsynonymous SNV 0.934 5 38 hm5C_associated_SNPs_19524 0 0 0 0 1 TRPV2 chr17:16329413 3'AG 16329413 Downstream 62bp
chr3 184021823 184021823 1 + T C COAD 184021833 + 184021813 184021853 41 GACTATGTTCTCCACAACAGCAACACCATGAGACTTGGTTC GACTATGTTCCCCACAACAGCAACACCATGAGACTTGGTTC < 41bp 1 0.565992419263414 1 0.329997926950455 experiment 0.868015161473171 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184021833 chr3:184021823 nonsynonymous SNV 0.999 2 11 hm5C_associated_SNPs_19525 0 0 1 0 2 PSMD2 chr3:184021735 3'AG 184021735 Downstream 89bp
chr3 184021823 184021823 1 + T C COAD 184021833 + 184021813 184021853 41 GACTATGTTCTCCACAACAGCAACACCATGAGACTTGGTTC GACTATGTTCCCCACAACAGCAACACCATGAGACTTGGTTC < 41bp 1 0.565992419263414 1 0.329997926950455 experiment 0.868015161473171 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184021833 chr3:184021823 nonsynonymous SNV 0.999 2 11 hm5C_associated_SNPs_19525 0 0 1 0 2 PSMD2 chr3:184021862 5'GT 184021862 Upstream 40bp
chr11 74336521 74336521 1 + G A COAD 74336519 + 74336499 74336539 41 AAAAATAGTGGAGCAGCCTACAGTGTCTGTCACGGAACCAA AAAAATAGTGGAGCAGCCTACAATGTCTGTCACGGAACCAA < 41bp 1 0.336743400553412 1 0.371417939662933 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD3 ENSG00000077514 CDS Human protein_coding chr11:74336519 chr11:74336521 nonsynonymous SNV 0.993 0 23 hm5C_associated_SNPs_19526 0 0 1 0 2 POLD3 chr11:74336453 3'AG 74336453 Downstream 69bp
chr11 74336521 74336521 1 + G A COAD 74336519 + 74336499 74336539 41 AAAAATAGTGGAGCAGCCTACAGTGTCTGTCACGGAACCAA AAAAATAGTGGAGCAGCCTACAATGTCTGTCACGGAACCAA < 41bp 1 0.336743400553412 1 0.371417939662933 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD3 ENSG00000077514 CDS Human protein_coding chr11:74336519 chr11:74336521 nonsynonymous SNV 0.993 0 23 hm5C_associated_SNPs_19526 0 0 1 0 2 POLD3 chr11:74336618 5'GT 74336618 Upstream 98bp
chr11 68204433 68204433 1 + C T COAD 68204450 + 68204430 68204470 41 CCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG CCCTGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG < 41bp 1 0.139293652133777 1 0.0968851745128632 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204450 chr11:68204433 synonymous SNV . 0 4 hm5C_associated_SNPs_19527 0 0 0 0 2 LRP5 chr11:68204357 3'AG 68204357 Downstream 77bp
chr11 68204433 68204433 1 + C T COAD 68204450 + 68204430 68204470 41 CCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG CCCTGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG < 41bp 1 0.139293652133777 1 0.0968851745128632 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204450 chr11:68204433 synonymous SNV . 0 4 hm5C_associated_SNPs_19527 0 0 0 0 2 LRP5 chr11:68204467 5'GT 68204467 Upstream 35bp
chr11 68204433 68204433 1 + C T COAD 68204451 + 68204431 68204471 41 CCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTGA CCTGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTGA < 41bp 1 0.45155790203668 1 0.582846164703369 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204451 chr11:68204433 synonymous SNV . 0 3 hm5C_associated_SNPs_19528 0 0 0 0 2 LRP5 chr11:68204357 3'AG 68204357 Downstream 77bp
chr11 68204433 68204433 1 + C T COAD 68204451 + 68204431 68204471 41 CCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTGA CCTGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTGA < 41bp 1 0.45155790203668 1 0.582846164703369 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204451 chr11:68204433 synonymous SNV . 0 3 hm5C_associated_SNPs_19528 0 0 0 0 2 LRP5 chr11:68204467 5'GT 68204467 Upstream 35bp
chr9 133954631 133954631 1 + A G COAD 133954635 + 133954615 133954655 41 CCACTGAGGCTGCCCGAACCCTCCAGACTGCTGCCCAGGCG CCACTGAGGCTGCCCGGACCCTCCAGACTGCTGCCCAGGCG < 41bp 1 0.781408066487492 1 0.880521178245544 experiment 0.437183867025015 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133954635 chr9:133954631 synonymous SNV . 0 17 hm5C_associated_SNPs_19531 0 0 0 0 1 LAMC3 chr9:133954685 5'GT 133954685 Upstream 55bp
chr19 7620147 7620147 1 + G A COAD 7620146 + 7620126 7620166 41 CCATCCCAGCATGAGCTCTACGAGAAGGTTTTCTCCAGGCG CCATCCCAGCATGAGCTCTACAAGAAGGTTTTCTCCAGGCG < 41bp 1 0.620878534250833 1 0.186141908168793 experiment 0.758242931498334 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620146 chr19:7620147 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_19532 0 0 1 0 1 PNPLA6 chr19:7620135 3'AG 7620135 Downstream 13bp
chr19 7620147 7620147 1 + G A COAD 7620161 + 7620141 7620181 41 CTCTACGAGAAGGTTTTCTCCAGGCGCGCGGACCGGCACAG CTCTACAAGAAGGTTTTCTCCAGGCGCGCGGACCGGCACAG < 41bp 1 0.666009424772872 1 0.919839859008789 experiment 0.667981150454255 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620161 chr19:7620147 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_19533 0 0 1 0 1 PNPLA6 chr19:7620135 3'AG 7620135 Downstream 13bp
chr8 27288488 27288488 1 + C T COAD 27288507 + 27288487 27288527 41 CCGGCTTCGCCAACATCGACCAGGAGACCTACCGCTGTGAA CTGGCTTCGCCAACATCGACCAGGAGACCTACCGCTGTGAA < 41bp 1 0.713710530075467 1 0.973294496536255 experiment 0.572578939849066 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTK2B ENSG00000120899 CDS Human protein_coding chr8:27288507 chr8:27288488 synonymous SNV . 0 2 hm5C_associated_SNPs_19534 0 0 1 0 1 PTK2B chr8:27288533 5'GT 27288533 Upstream 46bp
chr13 111111152 111111152 1 + C T COAD 111111171 + 111111151 111111191 41 ACGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAG ATGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAG < 41bp 1 0.28228760280017 1 0.74571692943573 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111171 chr13:111111152 synonymous SNV . 0 2 hm5C_associated_SNPs_19535 0 0 0 0 1 COL4A2 chr13:111111118 3'AG 111111118 Downstream 35bp
chr13 111111152 111111152 1 + C T COAD 111111172 + 111111152 111111192 41 CGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAGG TGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAGG < 41bp 1 0.702422368619576 1 0.919315874576569 experiment 0.595155262760847 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111172 chr13:111111152 synonymous SNV . 0 1 hm5C_associated_SNPs_19536 0 0 0 0 1 COL4A2 chr13:111111118 3'AG 111111118 Downstream 35bp
chr16 31235536 31235536 1 + G A COAD 31235556 + 31235536 31235576 41 GCACCCGAGCCTGGTGGTGTCTTCCTCTGGCCGCCGCGTGG ACACCCGAGCCTGGTGGTGTCTTCCTCTGGCCGCCGCGTGG < 41bp 1 0.267835510398057 1 0.0841374695301056 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31235556 chr16:31235536 synonymous SNV . 0 1 hm5C_associated_SNPs_19537 0 0 1 0 1 TRIM72 chr16:31235502 3'AG 31235502 Downstream 35bp
chr8 25149615 25149615 1 + T C COAD 25149611 + 25149591 25149631 41 ATCGAGTGGCGGTCCCAGATCCTGTCTGGGACGCTCCCCAA ATCGAGTGGCGGTCCCAGATCCTGCCTGGGACGCTCCCCAA < 41bp 1 0.295095754733313 1 0.747626721858978 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25149611 chr8:25149615 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_19538 0 0 1 0 2 DOCK5 chr8:25149540 3'AG 25149540 Downstream 76bp
chr8 25149615 25149615 1 + T C COAD 25149611 + 25149591 25149631 41 ATCGAGTGGCGGTCCCAGATCCTGTCTGGGACGCTCCCCAA ATCGAGTGGCGGTCCCAGATCCTGCCTGGGACGCTCCCCAA < 41bp 1 0.295095754733313 1 0.747626721858978 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25149611 chr8:25149615 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_19538 0 0 1 0 2 DOCK5 chr8:25149688 5'GT 25149688 Upstream 74bp
chrX 149671754 149671754 1 + C T COAD 149671740 + 149671720 149671760 41 GGGCAGCTGGGATCCGAAGGCCTGGAGGCAGGTGCCCGCTC GGGCAGCTGGGATCCGAAGGCCTGGAGGCAGGTGTCCGCTC < 41bp 1 0.482011997834043 1 0.517258524894714 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149671740 chrX:149671754 nonsynonymous SNV 0.997 3 35 hm5C_associated_SNPs_19539 0 0 0 0 1 MAMLD1 chrX:149671787 5'GT 149671787 Upstream 34bp
chrX 149671754 149671754 1 + C T COAD 149671748 + 149671728 149671768 41 GGGATCCGAAGGCCTGGAGGCAGGTGCCCGCTCCACTACTG GGGATCCGAAGGCCTGGAGGCAGGTGTCCGCTCCACTACTG < 41bp 1 0.768838818615912 1 0.809158265590668 experiment 0.462322362768176 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149671748 chrX:149671754 nonsynonymous SNV 0.997 3 27 hm5C_associated_SNPs_19540 0 0 0 0 1 MAMLD1 chrX:149671787 5'GT 149671787 Upstream 34bp
chr19 54649749 54649749 1 + C G COAD 54649752 + 54649732 54649772 41 ACCACCTCCAGCTCTCCCATCCCGCCCAGCCCAGCCAACTG ACCACCTCCAGCTCTCCGATCCCGCCCAGCCCAGCCAACTG < 41bp 1 0.224372476698649 1 0.487461417913437 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54649752 chr19:54649749 synonymous SNV . 0 18 hm5C_associated_SNPs_19541 0 0 1 0 1 CNOT3 chr19:54649779 5'GT 54649779 Upstream 31bp
chrX 48925560 48925560 1 + A G COAD 48925566 + 48925546 48925586 41 GGGCCAGGCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCC GGGCCAGGCGCTGTGCGGGGCCCCCAGCCAGGCGCCACTCC < 41bp 1 0.0974417849196309 1 0.0710498690605164 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925566 chrX:48925560 nonsynonymous SNV 0.987 3 15 hm5C_associated_SNPs_19542 0 0 0 0 1 CCDC120 chrX:48925626 5'GT 48925626 Upstream 67bp
chrX 48925560 48925560 1 + A G COAD 48925567 + 48925547 48925587 41 GGCCAGGCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCC GGCCAGGCGCTGTGCGGGGCCCCCAGCCAGGCGCCACTCCC < 41bp 1 0.498141386818053 1 0.298236399888992 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925567 chrX:48925560 nonsynonymous SNV 0.987 3 14 hm5C_associated_SNPs_19543 0 0 0 0 1 CCDC120 chrX:48925626 5'GT 48925626 Upstream 67bp
chrX 48925560 48925560 1 + A G COAD 48925568 + 48925548 48925588 41 GCCAGGCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCA GCCAGGCGCTGTGCGGGGCCCCCAGCCAGGCGCCACTCCCA < 41bp 1 0.245548145698184 1 0.139086902141571 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925568 chrX:48925560 nonsynonymous SNV 0.987 3 13 hm5C_associated_SNPs_19544 0 0 0 0 1 CCDC120 chrX:48925626 5'GT 48925626 Upstream 67bp
chrX 48925560 48925560 1 + A G COAD 48925569 + 48925549 48925589 41 CCAGGCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCAC CCAGGCGCTGTGCGGGGCCCCCAGCCAGGCGCCACTCCCAC < 41bp 1 0.207599386219111 1 0.442592054605484 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925569 chrX:48925560 nonsynonymous SNV 0.987 3 12 hm5C_associated_SNPs_19545 0 0 0 0 1 CCDC120 chrX:48925626 5'GT 48925626 Upstream 67bp
chrX 48925560 48925560 1 + A G COAD 48925570 + 48925550 48925590 41 CAGGCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCACA CAGGCGCTGTGCGGGGCCCCCAGCCAGGCGCCACTCCCACA < 41bp 1 0.373529955156794 1 0.492123246192932 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925570 chrX:48925560 nonsynonymous SNV 0.987 3 11 hm5C_associated_SNPs_19546 0 0 0 0 1 CCDC120 chrX:48925626 5'GT 48925626 Upstream 67bp
chrX 48925560 48925560 1 + A G COAD 48925573 + 48925553 48925593 41 GCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCACACTC GCGCTGTGCGGGGCCCCCAGCCAGGCGCCACTCCCACACTC < 41bp 1 0.564391975308089 1 0.885848879814148 experiment 0.871216049383823 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925573 chrX:48925560 nonsynonymous SNV 0.987 3 8 hm5C_associated_SNPs_19547 0 0 0 0 1 CCDC120 chrX:48925626 5'GT 48925626 Upstream 67bp
chrX 48925560 48925560 1 + A G COAD 48925574 + 48925554 48925594 41 CGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCACACTCG CGCTGTGCGGGGCCCCCAGCCAGGCGCCACTCCCACACTCG < 41bp 1 0.604437592057262 1 0.942014992237091 experiment 0.791124815885475 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925574 chrX:48925560 nonsynonymous SNV 0.987 3 7 hm5C_associated_SNPs_19548 0 0 0 0 1 CCDC120 chrX:48925626 5'GT 48925626 Upstream 67bp
chr1 228496002 228496002 1 + G C COAD 228496008 + 228495988 228496028 41 CACACCCTGCGGCTGAAGGGCGTGACGCCCGAGGACGCTGG CACACCCTGCGGCTCAAGGGCGTGACGCCCGAGGACGCTGG < 41bp 1 0.104313134801688 1 0.658092141151428 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496008 chr1:228496002 synonymous SNV . 0 15 hm5C_associated_SNPs_19549 0 0 0 0 1 OBSCN chr1:228496084 5'GT 228496084 Upstream 83bp
chr1 228496002 228496002 1 + G C COAD 228496015 + 228495995 228496035 41 TGCGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTC TGCGGCTCAAGGGCGTGACGCCCGAGGACGCTGGCACTGTC < 41bp 1 0.144964252000724 1 0.700299263000488 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496015 chr1:228496002 synonymous SNV . 0 8 hm5C_associated_SNPs_19550 0 0 0 0 1 OBSCN chr1:228496084 5'GT 228496084 Upstream 83bp
chr1 228496002 228496002 1 + G C COAD 228496016 + 228495996 228496036 41 GCGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCT GCGGCTCAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCT < 41bp 1 0.0712023625881616 1 0.510619282722473 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496016 chr1:228496002 synonymous SNV . 0 7 hm5C_associated_SNPs_19551 0 0 0 0 1 OBSCN chr1:228496084 5'GT 228496084 Upstream 83bp
chr1 228496002 228496002 1 + G C COAD 228496017 + 228495997 228496037 41 CGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCTC CGGCTCAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCTC < 41bp 1 0.210566759472297 1 0.880940854549408 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496017 chr1:228496002 synonymous SNV . 0 6 hm5C_associated_SNPs_19552 0 0 0 0 1 OBSCN chr1:228496084 5'GT 228496084 Upstream 83bp
chr10 60580160 60580160 1 + A C COAD 60580149 + 60580129 60580169 41 ATCGATCTTCAGACATTCCTCACTCTCACAGATCAGGATCT ATCGATCTTCAGACATTCCTCACTCTCACAGCTCAGGATCT < 41bp 1 0.0907959278675374 1 0.108972370624542 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60580149 chr10:60580160 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_19554 0 0 1 0 2 BICC1 chr10:60580129 3'AG 60580129 Downstream 32bp
chr10 60580160 60580160 1 + A C COAD 60580149 + 60580129 60580169 41 ATCGATCTTCAGACATTCCTCACTCTCACAGATCAGGATCT ATCGATCTTCAGACATTCCTCACTCTCACAGCTCAGGATCT < 41bp 1 0.0907959278675374 1 0.108972370624542 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60580149 chr10:60580160 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_19554 0 0 1 0 2 BICC1 chr10:60580228 5'GT 60580228 Upstream 69bp
chr7 130021519 130021519 1 + C T COAD 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCTGAGT < 41bp 1 0.179335705130744 1 0.0719693005084991 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021519 stopgain 0.899 1 37 hm5C_associated_SNPs_19555 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 49bp
chr7 130021519 130021519 1 + C T COAD 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCTGAGT < 41bp 1 0.179335705130744 1 0.0719693005084991 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021519 stopgain 0.899 1 37 hm5C_associated_SNPs_19555 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 3bp
chr7 130021519 130021519 1 + C T COAD 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCTGAGTGC < 41bp 1 0.208881785218373 1 0.0313260555267334 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021519 stopgain 0.899 1 35 hm5C_associated_SNPs_19556 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 49bp
chr7 130021519 130021519 1 + C T COAD 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCTGAGTGC < 41bp 1 0.208881785218373 1 0.0313260555267334 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021519 stopgain 0.899 1 35 hm5C_associated_SNPs_19556 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 3bp
chr7 130021519 130021519 1 + C T COAD 130021506 + 130021486 130021526 41 GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCTGAGTGCC < 41bp 1 0.434526720548304 1 0.518277883529663 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021506 chr7:130021519 stopgain 0.899 1 34 hm5C_associated_SNPs_19557 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 49bp
chr7 130021519 130021519 1 + C T COAD 130021506 + 130021486 130021526 41 GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCTGAGTGCC < 41bp 1 0.434526720548304 1 0.518277883529663 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021506 chr7:130021519 stopgain 0.899 1 34 hm5C_associated_SNPs_19557 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 3bp
chr7 130021519 130021519 1 + C T COAD 130021507 + 130021487 130021527 41 GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC GGCCTGCCCACCCTGGCTCCCCCATCGACGTCTGAGTGCCC < 41bp 1 0.0994683185014242 1 0.0669406652450562 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021507 chr7:130021519 stopgain 0.899 1 33 hm5C_associated_SNPs_19558 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 49bp
chr7 130021519 130021519 1 + C T COAD 130021507 + 130021487 130021527 41 GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC GGCCTGCCCACCCTGGCTCCCCCATCGACGTCTGAGTGCCC < 41bp 1 0.0994683185014242 1 0.0669406652450562 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021507 chr7:130021519 stopgain 0.899 1 33 hm5C_associated_SNPs_19558 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 3bp
chr7 130021519 130021519 1 + C T COAD 130021508 + 130021488 130021528 41 GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT GCCTGCCCACCCTGGCTCCCCCATCGACGTCTGAGTGCCCT < 41bp 1 0.0605153482890077 1 0.220983594655991 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021508 chr7:130021519 stopgain 0.899 1 32 hm5C_associated_SNPs_19559 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 49bp
chr7 130021519 130021519 1 + C T COAD 130021508 + 130021488 130021528 41 GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT GCCTGCCCACCCTGGCTCCCCCATCGACGTCTGAGTGCCCT < 41bp 1 0.0605153482890077 1 0.220983594655991 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021508 chr7:130021519 stopgain 0.899 1 32 hm5C_associated_SNPs_19559 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 3bp
chr7 130021519 130021519 1 + C T COAD 130021509 + 130021489 130021529 41 CCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT CCTGCCCACCCTGGCTCCCCCATCGACGTCTGAGTGCCCTT < 41bp 1 0.346104808286123 1 0.195549219846725 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021509 chr7:130021519 stopgain 0.899 1 31 hm5C_associated_SNPs_19560 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 49bp
chr7 130021519 130021519 1 + C T COAD 130021509 + 130021489 130021529 41 CCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT CCTGCCCACCCTGGCTCCCCCATCGACGTCTGAGTGCCCTT < 41bp 1 0.346104808286123 1 0.195549219846725 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021509 chr7:130021519 stopgain 0.899 1 31 hm5C_associated_SNPs_19560 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 3bp
chr7 130021519 130021519 1 + C T COAD 130021515 + 130021495 130021535 41 CACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAG CACCCTGGCTCCCCCATCGACGTCTGAGTGCCCTTCCCCAG < 41bp 1 0.515746014667457 1 0.26461923122406 experiment 0.968507970665085 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021515 chr7:130021519 stopgain 0.899 1 25 hm5C_associated_SNPs_19561 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 49bp
chr7 130021519 130021519 1 + C T COAD 130021515 + 130021495 130021535 41 CACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAG CACCCTGGCTCCCCCATCGACGTCTGAGTGCCCTTCCCCAG < 41bp 1 0.515746014667457 1 0.26461923122406 experiment 0.968507970665085 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021515 chr7:130021519 stopgain 0.899 1 25 hm5C_associated_SNPs_19561 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 3bp
chr7 130021519 130021519 1 + C T COAD 130021518 + 130021498 130021538 41 CCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCAT CCTGGCTCCCCCATCGACGTCTGAGTGCCCTTCCCCAGCAT < 41bp 1 0.724230252020081 1 0.459531337022781 experiment 0.551539495959837 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021518 chr7:130021519 stopgain 0.899 1 22 hm5C_associated_SNPs_19562 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 49bp
chr7 130021519 130021519 1 + C T COAD 130021518 + 130021498 130021538 41 CCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCAT CCTGGCTCCCCCATCGACGTCTGAGTGCCCTTCCCCAGCAT < 41bp 1 0.724230252020081 1 0.459531337022781 experiment 0.551539495959837 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021518 chr7:130021519 stopgain 0.899 1 22 hm5C_associated_SNPs_19562 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 3bp
chr7 130021519 130021519 1 + C T COAD 130021525 + 130021505 130021545 41 CCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCG CCCCCATCGACGTCTGAGTGCCCTTCCCCAGCATCCAGGCG < 41bp 1 0.0688254995967481 1 0.0230735838413239 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021525 chr7:130021519 stopgain 0.899 1 15 hm5C_associated_SNPs_19563 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 49bp
chr7 130021519 130021519 1 + C T COAD 130021525 + 130021505 130021545 41 CCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCG CCCCCATCGACGTCTGAGTGCCCTTCCCCAGCATCCAGGCG < 41bp 1 0.0688254995967481 1 0.0230735838413239 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021525 chr7:130021519 stopgain 0.899 1 15 hm5C_associated_SNPs_19563 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 3bp
chr7 130021519 130021519 1 + C T COAD 130021526 + 130021506 130021546 41 CCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGG CCCCATCGACGTCTGAGTGCCCTTCCCCAGCATCCAGGCGG < 41bp 1 0.025581734959122 1 0.0635367929935455 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021526 chr7:130021519 stopgain 0.899 1 14 hm5C_associated_SNPs_19564 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 49bp
chr7 130021519 130021519 1 + C T COAD 130021526 + 130021506 130021546 41 CCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGG CCCCATCGACGTCTGAGTGCCCTTCCCCAGCATCCAGGCGG < 41bp 1 0.025581734959122 1 0.0635367929935455 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021526 chr7:130021519 stopgain 0.899 1 14 hm5C_associated_SNPs_19564 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 3bp
chr7 130021519 130021519 1 + C T COAD 130021527 + 130021507 130021547 41 CCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGT CCCATCGACGTCTGAGTGCCCTTCCCCAGCATCCAGGCGGT < 41bp 1 0.164771749152678 1 0.0603552758693695 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021527 chr7:130021519 stopgain 0.899 1 13 hm5C_associated_SNPs_19565 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 49bp
chr7 130021519 130021519 1 + C T COAD 130021527 + 130021507 130021547 41 CCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGT CCCATCGACGTCTGAGTGCCCTTCCCCAGCATCCAGGCGGT < 41bp 1 0.164771749152678 1 0.0603552758693695 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021527 chr7:130021519 stopgain 0.899 1 13 hm5C_associated_SNPs_19565 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 3bp
chr7 130021519 130021519 1 + C T COAD 130021530 + 130021510 130021550 41 ATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAA ATCGACGTCTGAGTGCCCTTCCCCAGCATCCAGGCGGTCAA < 41bp 1 0.684184668066656 1 0.560113131999969 experiment 0.631630663866688 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021530 chr7:130021519 stopgain 0.899 1 10 hm5C_associated_SNPs_19566 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 49bp
chr7 130021519 130021519 1 + C T COAD 130021530 + 130021510 130021550 41 ATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAA ATCGACGTCTGAGTGCCCTTCCCCAGCATCCAGGCGGTCAA < 41bp 1 0.684184668066656 1 0.560113131999969 experiment 0.631630663866688 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021530 chr7:130021519 stopgain 0.899 1 10 hm5C_associated_SNPs_19566 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 3bp
chr7 130021519 130021519 1 + C T COAD 130021531 + 130021511 130021551 41 TCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAG TCGACGTCTGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAG < 41bp 1 0.350354546280163 1 0.387180030345917 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021531 chr7:130021519 stopgain 0.899 1 9 hm5C_associated_SNPs_19567 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 49bp
chr7 130021519 130021519 1 + C T COAD 130021531 + 130021511 130021551 41 TCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAG TCGACGTCTGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAG < 41bp 1 0.350354546280163 1 0.387180030345917 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021531 chr7:130021519 stopgain 0.899 1 9 hm5C_associated_SNPs_19567 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 3bp
chr7 130021519 130021519 1 + C T COAD 130021532 + 130021512 130021552 41 CGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGA CGACGTCTGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGA < 41bp 1 0.362342322794676 1 0.164808005094528 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021532 chr7:130021519 stopgain 0.899 1 8 hm5C_associated_SNPs_19568 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 49bp
chr7 130021519 130021519 1 + C T COAD 130021532 + 130021512 130021552 41 CGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGA CGACGTCTGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGA < 41bp 1 0.362342322794676 1 0.164808005094528 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021532 chr7:130021519 stopgain 0.899 1 8 hm5C_associated_SNPs_19568 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 3bp
chr7 130021519 130021519 1 + C T COAD 130021536 + 130021516 130021556 41 GTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT GTCTGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT < 41bp 1 0.157838012642367 1 0.0695635080337524 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021536 chr7:130021519 stopgain 0.899 1 4 hm5C_associated_SNPs_19569 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 49bp
chr7 130021519 130021519 1 + C T COAD 130021536 + 130021516 130021556 41 GTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT GTCTGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT < 41bp 1 0.157838012642367 1 0.0695635080337524 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021536 chr7:130021519 stopgain 0.899 1 4 hm5C_associated_SNPs_19569 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 3bp
chr7 130021519 130021519 1 + C T COAD 130021539 + 130021519 130021559 41 CGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCT TGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCT < 41bp 1 0.398012159172782 1 0.324582874774933 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021539 chr7:130021519 stopgain 0.899 1 1 hm5C_associated_SNPs_19570 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 49bp
chr7 130021519 130021519 1 + C T COAD 130021539 + 130021519 130021559 41 CGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCT TGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCT < 41bp 1 0.398012159172782 1 0.324582874774933 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021539 chr7:130021519 stopgain 0.899 1 1 hm5C_associated_SNPs_19570 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 3bp
chr7 98497050 98497050 1 + C T COAD 98497067 + 98497047 98497087 41 TTCCATCATTCCGAGGGGATCACTTTCTCTGAAAGTGTTGG TTCTATCATTCCGAGGGGATCACTTTCTCTGAAAGTGTTGG < 41bp 1 0.0322564768069464 1 0.0962260961532593 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98497067 chr7:98497050 synonymous SNV . 0 4 hm5C_associated_SNPs_19571 0 0 1 0 2 TRRAP chr7:98497045 3'AG 98497045 Downstream 6bp
chr7 98497050 98497050 1 + C T COAD 98497067 + 98497047 98497087 41 TTCCATCATTCCGAGGGGATCACTTTCTCTGAAAGTGTTGG TTCTATCATTCCGAGGGGATCACTTTCTCTGAAAGTGTTGG < 41bp 1 0.0322564768069464 1 0.0962260961532593 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98497067 chr7:98497050 synonymous SNV . 0 4 hm5C_associated_SNPs_19571 0 0 1 0 2 TRRAP chr7:98497122 5'GT 98497122 Upstream 73bp
chr16 56792463 56792463 1 + G A COAD 56792462 + 56792442 56792482 41 TCACATAGGTCAGTTCTCCTCGGGTCTCGGGGACTTGACAT TCACATAGGTCAGTTCTCCTCAGGTCTCGGGGACTTGACAT < 41bp 1 0.74063378281269 1 0.908152341842651 experiment 0.518732434374619 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP93 ENSG00000102900 CDS Human protein_coding chr16:56792462 chr16:56792463 nonsynonymous SNV 0.319 2 22 hm5C_associated_SNPs_19572 0 0 1 0 1 NUP93 chr16:56792450 3'AG 56792450 Downstream 14bp
chr16 89977042 89977042 1 + C T COAD 89977054 + 89977034 89977074 41 TCTTCTTCCGGTCACTGTTGCCAAACTATACCATGGAGGTA TCTTCTTCTGGTCACTGTTGCCAAACTATACCATGGAGGTA < 41bp 1 0.289787691662862 1 0.296983063220978 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89977054 chr16:89977042 nonsynonymous SNV 0.037 4 9 hm5C_associated_SNPs_19574 0 0 1 0 2 TCF25 chr16:89976999 3'AG 89976999 Downstream 44bp
chr16 89977042 89977042 1 + C T COAD 89977054 + 89977034 89977074 41 TCTTCTTCCGGTCACTGTTGCCAAACTATACCATGGAGGTA TCTTCTTCTGGTCACTGTTGCCAAACTATACCATGGAGGTA < 41bp 1 0.289787691662862 1 0.296983063220978 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89977054 chr16:89977042 nonsynonymous SNV 0.037 4 9 hm5C_associated_SNPs_19574 0 0 1 0 2 TCF25 chr16:89977071 5'GT 89977071 Upstream 30bp
chr1 876651 876651 1 + C T COAD 876631 + 876611 876651 41 GTCAGCGTCGGAAGCAGGGCCTGGCTCAGCACCGGGAGGGC GTCAGCGTCGGAAGCAGGGCCTGGCTCAGCACCGGGAGGGT < 41bp 1 0.672078389769791 1 0.383477687835693 experiment 0.655843220460419 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:876631 chr1:876651 synonymous SNV 0.016 0 41 hm5C_associated_SNPs_19575 0 0 1 0 1 SAMD11 chr1:876686 5'GT 876686 Upstream 36bp
chr2 219676971 219676971 1 + G A COAD 219676979 + 219676959 219676999 41 GGTACCAGCTGCGCCAGGCTCTGAACCAGCGGTTGCTGAAG GGTACCAGCTGCACCAGGCTCTGAACCAGCGGTTGCTGAAG < 41bp 1 0.737409704665498 1 0.784596562385559 experiment 0.525180590669005 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219676979 chr2:219676971 nonsynonymous SNV 0.998 5 13 hm5C_associated_SNPs_19576 0 0 1 0 1 CYP27A1 chr2:219676945 3'AG 219676945 Downstream 27bp
chr7 5643530 5643530 1 + G A COAD 5643510 + 5643490 5643530 41 ACAGGGGACTCAGAGCTCTTCCTCATGAAGCTCATCAACCG ACAGGGGACTCAGAGCTCTTCCTCATGAAGCTCATCAACCA < 41bp 1 0.340432332440768 1 0.0629790127277374 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5643510 chr7:5643530 nonsynonymous SNV 0.963 2 41 hm5C_associated_SNPs_19577 0 0 1 0 1 FSCN1 chr7:5643494 3'AG 5643494 Downstream 37bp
chr19 50334614 50334614 1 + G A COAD 50334624 + 50334604 50334644 41 CCCAGGAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAG CCCAGGAGGGATGAGCGGCCCTTCCCCAGCCCAGCTGGGAG < 41bp 1 0.215421508687646 1 0.199333250522614 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334624 chr19:50334614 nonsynonymous SNV 0.827 2 11 hm5C_associated_SNPs_19578 0 0 1 0 1 MED25 chr19:50334590 3'AG 50334590 Downstream 25bp
chr19 50334614 50334614 1 + G A COAD 50334629 + 50334609 50334649 41 GAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAGCCCCA GAGGGATGAGCGGCCCTTCCCCAGCCCAGCTGGGAGCCCCA < 41bp 1 0.465728620492691 1 0.243229418992996 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334629 chr19:50334614 nonsynonymous SNV 0.827 2 6 hm5C_associated_SNPs_19579 0 0 1 0 1 MED25 chr19:50334590 3'AG 50334590 Downstream 25bp
chr17 37676239 37676239 1 + C A COAD 37676240 + 37676220 37676260 41 CAGCACTTGATTTATTGGACCACATGCTGACACTAGATCCT CAGCACTTGATTTATTGGAACACATGCTGACACTAGATCCT < 41bp 1 0.132179445116993 1 0.0449666380882263 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDK12 ENSG00000167258 CDS Human protein_coding chr17:37676240 chr17:37676239 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_19580 0 0 1 0 1 CDK12 chr17:37676209 3'AG 37676209 Downstream 31bp
chr13 20233194 20233194 1 + G A COAD 20233203 + 20233183 20233223 41 GGATGAAGTTGGAAGATTTCCAAAAGCACCTTGATGGGAAA GGATGAAGTTGAAAGATTTCCAAAAGCACCTTGATGGGAAA < 41bp 1 0.692814751475586 1 0.802286326885223 experiment 0.614370497048828 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MPHOSPH8 ENSG00000196199 CDS Human protein_coding chr13:20233203 chr13:20233194 nonsynonymous SNV 0.760 4 12 hm5C_associated_SNPs_19581 0 0 1 0 2 MPHOSPH8 chr13:20233135 3'AG 20233135 Downstream 60bp
chr13 20233194 20233194 1 + G A COAD 20233203 + 20233183 20233223 41 GGATGAAGTTGGAAGATTTCCAAAAGCACCTTGATGGGAAA GGATGAAGTTGAAAGATTTCCAAAAGCACCTTGATGGGAAA < 41bp 1 0.692814751475586 1 0.802286326885223 experiment 0.614370497048828 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MPHOSPH8 ENSG00000196199 CDS Human protein_coding chr13:20233203 chr13:20233194 nonsynonymous SNV 0.760 4 12 hm5C_associated_SNPs_19581 0 0 1 0 2 MPHOSPH8 chr13:20233260 5'GT 20233260 Upstream 67bp
chr19 50912138 50912138 1 + C T COAD 50912125 + 50912105 50912145 41 CCACAACCTGTGTTACACCACGCTCCTTCGGCCCGGGACTG CCACAACCTGTGTTACACCACGCTCCTTCGGCCTGGGACTG < 41bp 1 0.180685071619708 1 0.0387570858001709 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912125 chr19:50912138 synonymous SNV . 0 34 hm5C_associated_SNPs_19582 2 0 1 0 2 POLD1 chr19:50912042 3'AG 50912042 Downstream 97bp
chr19 50912138 50912138 1 + C T COAD 50912125 + 50912105 50912145 41 CCACAACCTGTGTTACACCACGCTCCTTCGGCCCGGGACTG CCACAACCTGTGTTACACCACGCTCCTTCGGCCTGGGACTG < 41bp 1 0.180685071619708 1 0.0387570858001709 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912125 chr19:50912138 synonymous SNV . 0 34 hm5C_associated_SNPs_19582 2 0 1 0 2 POLD1 chr19:50912158 5'GT 50912158 Upstream 21bp
chr8 54793589 54793589 1 + A G COAD 54793600 + 54793580 54793620 41 GCACGGCGGACGGAGGCGAGCCGGCCGGGGCTTCCTCCCCG GCACGGCGGGCGGAGGCGAGCCGGCCGGGGCTTCCTCCCCG < 41bp 1 0.728863680606878 1 0.501587867736816 experiment 0.542272638786244 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RGS20 ENSG00000147509 CDS Human protein_coding chr8:54793600 chr8:54793589 nonsynonymous SNV 0.437 0 10 hm5C_associated_SNPs_19583 0 0 1 0 1 RGS20 chr8:54793644 5'GT 54793644 Upstream 56bp
chr11 67787207 67787207 1 + C T COAD 67787211 + 67787191 67787231 41 TTGCTGTGGTGCTGGGCGGGCCCCAGGAGACGGGGCAGCTG TTGCTGTGGTGCTGGGTGGGCCCCAGGAGACGGGGCAGCTG < 41bp 1 0.47385486400538 1 0.365920394659042 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67787211 chr11:67787207 synonymous SNV . 0 17 hm5C_associated_SNPs_19585 0 0 0 0 2 ALDH3B1 chr11:67787184 3'AG 67787184 Downstream 24bp
chr11 67787207 67787207 1 + C T COAD 67787211 + 67787191 67787231 41 TTGCTGTGGTGCTGGGCGGGCCCCAGGAGACGGGGCAGCTG TTGCTGTGGTGCTGGGTGGGCCCCAGGAGACGGGGCAGCTG < 41bp 1 0.47385486400538 1 0.365920394659042 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67787211 chr11:67787207 synonymous SNV . 0 17 hm5C_associated_SNPs_19585 0 0 0 0 2 ALDH3B1 chr11:67787265 5'GT 67787265 Upstream 59bp
chr11 67787207 67787207 1 + C T COAD 67787212 + 67787192 67787232 41 TGCTGTGGTGCTGGGCGGGCCCCAGGAGACGGGGCAGCTGC TGCTGTGGTGCTGGGTGGGCCCCAGGAGACGGGGCAGCTGC < 41bp 1 0.249467321905068 1 0.549837112426758 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67787212 chr11:67787207 synonymous SNV . 0 16 hm5C_associated_SNPs_19586 0 0 0 0 2 ALDH3B1 chr11:67787184 3'AG 67787184 Downstream 24bp
chr11 67787207 67787207 1 + C T COAD 67787212 + 67787192 67787232 41 TGCTGTGGTGCTGGGCGGGCCCCAGGAGACGGGGCAGCTGC TGCTGTGGTGCTGGGTGGGCCCCAGGAGACGGGGCAGCTGC < 41bp 1 0.249467321905068 1 0.549837112426758 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67787212 chr11:67787207 synonymous SNV . 0 16 hm5C_associated_SNPs_19586 0 0 0 0 2 ALDH3B1 chr11:67787265 5'GT 67787265 Upstream 59bp
chrX 107868980 107868980 1 + G A COAD 107868973 + 107868953 107868993 41 GTCTCCCTGGACAGCCAGGTCTTATAGGACCTCCTGGACTT GTCTCCCTGGACAGCCAGGTCTTATAGAACCTCCTGGACTT < 41bp 1 0.167107723918341 1 0.0420470237731934 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107868973 chrX:107868980 nonsynonymous SNV 0.997 5 28 hm5C_associated_SNPs_19587 0 0 0 0 2 COL4A5 chrX:107868935 3'AG 107868935 Downstream 46bp
chrX 107868980 107868980 1 + G A COAD 107868973 + 107868953 107868993 41 GTCTCCCTGGACAGCCAGGTCTTATAGGACCTCCTGGACTT GTCTCCCTGGACAGCCAGGTCTTATAGAACCTCCTGGACTT < 41bp 1 0.167107723918341 1 0.0420470237731934 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107868973 chrX:107868980 nonsynonymous SNV 0.997 5 28 hm5C_associated_SNPs_19587 0 0 0 0 2 COL4A5 chrX:107869024 5'GT 107869024 Upstream 45bp
chr12 113872002 113872002 1 + C T COAD 113872014 + 113871994 113872034 41 AGAATGTCCCCCCGTTTGACCACCCCCTAATATGGTAAGGC AGAATGTCTCCCCGTTTGACCACCCCCTAATATGGTAAGGC < 41bp 1 0.162979698274707 1 0.159820824861526 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SDSL ENSG00000139410 CDS Human protein_coding chr12:113872014 chr12:113872002 nonsynonymous SNV 0.033 1 9 hm5C_associated_SNPs_19588 0 0 0 0 2 SDSL chr12:113871939 3'AG 113871939 Downstream 64bp
chr12 113872002 113872002 1 + C T COAD 113872014 + 113871994 113872034 41 AGAATGTCCCCCCGTTTGACCACCCCCTAATATGGTAAGGC AGAATGTCTCCCCGTTTGACCACCCCCTAATATGGTAAGGC < 41bp 1 0.162979698274707 1 0.159820824861526 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SDSL ENSG00000139410 CDS Human protein_coding chr12:113872014 chr12:113872002 nonsynonymous SNV 0.033 1 9 hm5C_associated_SNPs_19588 0 0 0 0 2 SDSL chr12:113872027 5'GT 113872027 Upstream 26bp
chr6 3015773 3015773 1 + T C COAD 3015789 + 3015769 3015809 41 GCTGTACTGGTTCAGCGTGCCAGCCATCCTGAAGGGCTGGA GCTGCACTGGTTCAGCGTGCCAGCCATCCTGAAGGGCTGGA < 41bp 1 0.425548224657342 1 0.0793637335300446 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NQO2 ENSG00000124588 CDS Human protein_coding chr6:3015789 chr6:3015773 nonsynonymous SNV 0.836 2 5 hm5C_associated_SNPs_19589 0 0 1 0 1 NQO2 chr6:3015764 3'AG 3015764 Downstream 10bp
chr1 116916048 116916048 1 + C T COAD 116916028 + 116916008 116916048 41 CGCGGCAGCCCTAGCTCCCTCCACTTGGCTCCCCTGGTCCC CGCGGCAGCCCTAGCTCCCTCCACTTGGCTCCCCTGGTCCT < 41bp 1 0.354126727225705 1 0.187892109155655 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP1A1 ENSG00000269279 CDS Human other chr1:116916028 chr1:116916048 nonsynonymous SNV . 0 41 hm5C_associated_SNPs_19592 0 0 1 0 1 ATP1A1 chr1:116916145 5'GT 116916145 Upstream 98bp
chr9 139244095 139244095 1 + G A COAD 139244104 + 139244084 139244124 41 AGCAGGGACTCGCTACCCCTCCCCGTGAGGAGCAGGAAGTA AGCAGGGACTCACTACCCCTCCCCGTGAGGAGCAGGAAGTA < 41bp 1 0.291062317623684 1 0.197894126176834 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139244104 chr9:139244095 synonymous SNV . 0 12 hm5C_associated_SNPs_19593 0 0 0 0 1 GPSM1 chr9:139244039 3'AG 139244039 Downstream 57bp
chr3 184039155 184039155 1 + G A COAD 184039162 + 184039142 184039182 41 CCCAGCCTTCGTCGCCTTCTCCGACCCCATCACCATCCCCA CCCAGCCTTCGTCACCTTCTCCGACCCCATCACCATCCCCA < 41bp 1 0.217690658633294 1 0.359680593013763 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184039162 chr3:184039155 synonymous SNV . 0 14 hm5C_associated_SNPs_19594 0 0 1 0 1 EIF4G1 chr3:184039070 3'AG 184039070 Downstream 86bp
chr3 184039155 184039155 1 + G A COAD 184039163 + 184039143 184039183 41 CCAGCCTTCGTCGCCTTCTCCGACCCCATCACCATCCCCAG CCAGCCTTCGTCACCTTCTCCGACCCCATCACCATCCCCAG < 41bp 1 0.320911734506678 1 0.776067495346069 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184039163 chr3:184039155 synonymous SNV . 0 13 hm5C_associated_SNPs_19595 0 0 1 0 1 EIF4G1 chr3:184039070 3'AG 184039070 Downstream 86bp
chr7 73609162 73609162 1 + C T COAD 73609171 + 73609151 73609191 41 TTCAGAGATGGCCCTCCCCTCCGTGGATCCAACATGGATTT TTCAGAGATGGTCCTCCCCTCCGTGGATCCAACATGGATTT < 41bp 1 0.477763253846125 1 0.167983710765839 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4H ENSG00000106682 CDS Human protein_coding chr7:73609171 chr7:73609162 synonymous SNV . 0 12 hm5C_associated_SNPs_19596 0 0 1 0 2 EIF4H chr7:73609071 3'AG 73609071 Downstream 92bp
chr7 73609162 73609162 1 + C T COAD 73609171 + 73609151 73609191 41 TTCAGAGATGGCCCTCCCCTCCGTGGATCCAACATGGATTT TTCAGAGATGGTCCTCCCCTCCGTGGATCCAACATGGATTT < 41bp 1 0.477763253846125 1 0.167983710765839 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4H ENSG00000106682 CDS Human protein_coding chr7:73609171 chr7:73609162 synonymous SNV . 0 12 hm5C_associated_SNPs_19596 0 0 1 0 2 EIF4H chr7:73609208 5'GT 73609208 Upstream 47bp
chr17 4905829 4905829 1 + G A COAD 4905833 + 4905813 4905853 41 AGTCGGGGTTCTCTGCGGGTCCGGGAGCACCCCATCCTGGG AGTCGGGGTTCTCTGCAGGTCCGGGAGCACCCCATCCTGGG < 41bp 1 0.565010607815559 1 0.609167039394379 experiment 0.869978784368882 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905833 chr17:4905829 nonsynonymous SNV 0.997 3 17 hm5C_associated_SNPs_19597 0 0 1 0 1 KIF1C chr17:4905759 3'AG 4905759 Downstream 71bp
chr17 79652704 79652704 1 + G A COAD 79652714 + 79652694 79652734 41 GACCTGATCCGCCAAGGGGACACACAGTGAGTTAGCGGGGC GACCTGATCCACCAAGGGGACACACAGTGAGTTAGCGGGGC < 41bp 1 0.193782508111973 1 0.239881336688995 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79652714 chr17:79652704 nonsynonymous SNV 0.991 4 11 hm5C_associated_SNPs_19601 0 0 1 0 2 HGS chr17:79652635 3'AG 79652635 Downstream 70bp
chr17 79652704 79652704 1 + G A COAD 79652714 + 79652694 79652734 41 GACCTGATCCGCCAAGGGGACACACAGTGAGTTAGCGGGGC GACCTGATCCACCAAGGGGACACACAGTGAGTTAGCGGGGC < 41bp 1 0.193782508111973 1 0.239881336688995 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79652714 chr17:79652704 nonsynonymous SNV 0.991 4 11 hm5C_associated_SNPs_19601 0 0 1 0 2 HGS chr17:79652719 5'GT 79652719 Upstream 16bp
chr2 204082014 204082014 1 + G A COAD 204082013 + 204081993 204082033 41 TTCTCGAAAATTTTGGGGATCGAGCAAGCGGCTCAGCCAGA TTCTCGAAAATTTTGGGGATCAAGCAAGCGGCTCAGCCAGA < 41bp 1 0.187456975769036 1 0.258446902036667 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204082013 chr2:204082014 synonymous SNV . 0 22 hm5C_associated_SNPs_19602 0 0 1 0 1 NBEAL1 chr2:204081976 3'AG 204081976 Downstream 39bp
chr19 3192531 3192531 1 + G A COAD 3192513 + 3192493 3192533 41 GGAGGCGCGCACGATGGCGGCGGAGGTGCTGAGCCGCCGCT GGAGGCGCGCACGATGGCGGCGGAGGTGCTGAGCCGCCACT < 41bp 1 0.719335835751332 1 0.819395422935486 experiment 0.561328328497337 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCLN ENSG00000125912 CDS Human protein_coding chr19:3192513 chr19:3192531 nonsynonymous SNV 0.999 2 39 hm5C_associated_SNPs_19603 0 0 0 0 1 NCLN chr19:3192468 3'AG 3192468 Downstream 64bp
chr10 104129689 104129689 1 + G A COAD 104129695 + 104129675 104129715 41 GTCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCA GTCTAGTGTTCGGGACCCATCCACTGAAAACCAAGAGGCCA < 41bp 1 0.205252475258337 1 0.718380928039551 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129695 chr10:104129689 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_19604 0 0 1 0 2 GBF1 chr10:104129618 3'AG 104129618 Downstream 72bp
chr10 104129689 104129689 1 + G A COAD 104129695 + 104129675 104129715 41 GTCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCA GTCTAGTGTTCGGGACCCATCCACTGAAAACCAAGAGGCCA < 41bp 1 0.205252475258337 1 0.718380928039551 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129695 chr10:104129689 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_19604 0 0 1 0 2 GBF1 chr10:104129741 5'GT 104129741 Upstream 53bp
chr10 104129689 104129689 1 + G A COAD 104129696 + 104129676 104129716 41 TCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCAA TCTAGTGTTCGGGACCCATCCACTGAAAACCAAGAGGCCAA < 41bp 1 0.481895324469914 1 0.597578287124634 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129696 chr10:104129689 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_19605 0 0 1 0 2 GBF1 chr10:104129618 3'AG 104129618 Downstream 72bp
chr10 104129689 104129689 1 + G A COAD 104129696 + 104129676 104129716 41 TCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCAA TCTAGTGTTCGGGACCCATCCACTGAAAACCAAGAGGCCAA < 41bp 1 0.481895324469914 1 0.597578287124634 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129696 chr10:104129689 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_19605 0 0 1 0 2 GBF1 chr10:104129741 5'GT 104129741 Upstream 53bp
chr1 978673 978673 1 + C T COAD 978683 + 978663 978703 41 GCGACGTGTGCTGTGAAGAACGGGCAGGCAGCGTGTGAATG GCGACGTGTGTTGTGAAGAACGGGCAGGCAGCGTGTGAATG < 41bp 1 0.375902035402266 1 0.150994628667831 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:978683 chr1:978673 nonsynonymous SNV 0.064 0 11 hm5C_associated_SNPs_19606 0 0 1 0 1 AGRN chr1:978619 3'AG 978619 Downstream 55bp
chr21 46931095 46931095 1 + G A COAD 46931104 + 46931084 46931124 41 GCCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC GCCCGGGGCACACATCTTCTCCTTTGACGGCAAGGACGTCC < 41bp 1 0.0414166683253917 1 0.0856748521327972 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931104 chr21:46931095 nonsynonymous SNV 0.536 4 12 hm5C_associated_SNPs_19607 0 0 1 0 2 COL18A1 chr21:46931025 3'AG 46931025 Downstream 71bp
chr21 46931095 46931095 1 + G A COAD 46931104 + 46931084 46931124 41 GCCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC GCCCGGGGCACACATCTTCTCCTTTGACGGCAAGGACGTCC < 41bp 1 0.0414166683253917 1 0.0856748521327972 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931104 chr21:46931095 nonsynonymous SNV 0.536 4 12 hm5C_associated_SNPs_19607 0 0 1 0 2 COL18A1 chr21:46931140 5'GT 46931140 Upstream 46bp
chr21 46931095 46931095 1 + G A COAD 46931105 + 46931085 46931125 41 CCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT CCCGGGGCACACATCTTCTCCTTTGACGGCAAGGACGTCCT < 41bp 1 0.0654541759238277 1 0.0712566673755646 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931105 chr21:46931095 nonsynonymous SNV 0.536 4 11 hm5C_associated_SNPs_19608 0 0 1 0 2 COL18A1 chr21:46931025 3'AG 46931025 Downstream 71bp
chr21 46931095 46931095 1 + G A COAD 46931105 + 46931085 46931125 41 CCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT CCCGGGGCACACATCTTCTCCTTTGACGGCAAGGACGTCCT < 41bp 1 0.0654541759238277 1 0.0712566673755646 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931105 chr21:46931095 nonsynonymous SNV 0.536 4 11 hm5C_associated_SNPs_19608 0 0 1 0 2 COL18A1 chr21:46931140 5'GT 46931140 Upstream 46bp
chr17 37359320 37359320 1 + T A COAD 37359313 + 37359293 37359333 41 TGAGGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATAC TGAGGAGAATGAGGATTTTGCGCCGGCAGCTCAGAAGATAC < 41bp 1 0.796521538468777 1 0.0837273001670837 experiment 0.406956923062445 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359313 chr17:37359320 nonsynonymous SNV 0.441 4 28 hm5C_associated_SNPs_19609 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 79bp
chr17 37359320 37359320 1 + T A COAD 37359313 + 37359293 37359333 41 TGAGGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATAC TGAGGAGAATGAGGATTTTGCGCCGGCAGCTCAGAAGATAC < 41bp 1 0.796521538468777 1 0.0837273001670837 experiment 0.406956923062445 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359313 chr17:37359320 nonsynonymous SNV 0.441 4 28 hm5C_associated_SNPs_19609 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 43bp
chr17 37359320 37359320 1 + T A COAD 37359316 + 37359296 37359336 41 GGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGT GGAGAATGAGGATTTTGCGCCGGCAGCTCAGAAGATACCGT < 41bp 1 0.703463354592221 1 0.469786167144775 experiment 0.593073290815558 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359316 chr17:37359320 nonsynonymous SNV 0.441 4 25 hm5C_associated_SNPs_19610 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 79bp
chr17 37359320 37359320 1 + T A COAD 37359316 + 37359296 37359336 41 GGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGT GGAGAATGAGGATTTTGCGCCGGCAGCTCAGAAGATACCGT < 41bp 1 0.703463354592221 1 0.469786167144775 experiment 0.593073290815558 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359316 chr17:37359320 nonsynonymous SNV 0.441 4 25 hm5C_associated_SNPs_19610 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 43bp
chr17 37359320 37359320 1 + T A COAD 37359319 + 37359299 37359339 41 GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAA GAATGAGGATTTTGCGCCGGCAGCTCAGAAGATACCGTGAA < 41bp 1 0.384482990394726 1 0.235493212938309 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359319 chr17:37359320 nonsynonymous SNV 0.441 4 22 hm5C_associated_SNPs_19611 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 79bp
chr17 37359320 37359320 1 + T A COAD 37359319 + 37359299 37359339 41 GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAA GAATGAGGATTTTGCGCCGGCAGCTCAGAAGATACCGTGAA < 41bp 1 0.384482990394726 1 0.235493212938309 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359319 chr17:37359320 nonsynonymous SNV 0.441 4 22 hm5C_associated_SNPs_19611 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 43bp
chr17 37359320 37359320 1 + T A COAD 37359322 + 37359302 37359342 41 TGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCT TGAGGATTTTGCGCCGGCAGCTCAGAAGATACCGTGAATCT < 41bp 1 0.511754031034775 1 0.174792647361755 experiment 0.97649193793045 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359322 chr17:37359320 nonsynonymous SNV 0.441 4 19 hm5C_associated_SNPs_19612 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 79bp
chr17 37359320 37359320 1 + T A COAD 37359322 + 37359302 37359342 41 TGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCT TGAGGATTTTGCGCCGGCAGCTCAGAAGATACCGTGAATCT < 41bp 1 0.511754031034775 1 0.174792647361755 experiment 0.97649193793045 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359322 chr17:37359320 nonsynonymous SNV 0.441 4 19 hm5C_associated_SNPs_19612 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 43bp
chr17 37359320 37359320 1 + T A COAD 37359333 + 37359313 37359353 41 CGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGA CGCCGGCAGCTCAGAAGATACCGTGAATCTAAGAAGATCGA < 41bp 1 0.217247126552062 1 0.228010207414627 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359333 chr17:37359320 nonsynonymous SNV 0.441 4 8 hm5C_associated_SNPs_19613 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 79bp
chr17 37359320 37359320 1 + T A COAD 37359333 + 37359313 37359353 41 CGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGA CGCCGGCAGCTCAGAAGATACCGTGAATCTAAGAAGATCGA < 41bp 1 0.217247126552062 1 0.228010207414627 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359333 chr17:37359320 nonsynonymous SNV 0.441 4 8 hm5C_associated_SNPs_19613 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 43bp
chr11 66136050 66136050 1 - C T COAD 66136059 - 66136039 66136079 41 GCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTT GCACCCTCTTCCTCAGCGGCCAGGGCCTGACTGGGATCTTT < 41bp 1 0.481751817726002 1 0.728572010993958 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC29A2 ENSG00000174669 CDS Human protein_coding chr11:66136059 chr11:66136050 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_19614 0 0 1 0 2 SLC29A2 chr11:66136008 5'GT 66136008 Upstream 43bp
chr11 66136050 66136050 1 - C T COAD 66136059 - 66136039 66136079 41 GCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTT GCACCCTCTTCCTCAGCGGCCAGGGCCTGACTGGGATCTTT < 41bp 1 0.481751817726002 1 0.728572010993958 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC29A2 ENSG00000174669 CDS Human protein_coding chr11:66136059 chr11:66136050 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_19614 0 0 1 0 2 SLC29A2 chr11:66136142 3'AG 66136142 Downstream 93bp
chr1 11080584 11080584 1 + C T COAD 11080572 + 11080552 11080592 41 GAGGATGAGCTGCGGGAGTTCTTCTCTCAGTACGGGGATGT GAGGATGAGCTGCGGGAGTTCTTCTCTCAGTATGGGGATGT < 41bp 1 0.519509063874428 1 0.0350258946418762 experiment 0.960981872251144 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TARDBP ENSG00000120948 CDS Human protein_coding chr1:11080572 chr1:11080584 synonymous SNV . 0 33 hm5C_associated_SNPs_19615 0 0 1 0 2 TARDBP chr1:11080486 3'AG 11080486 Downstream 99bp
chr1 11080584 11080584 1 + C T COAD 11080572 + 11080552 11080592 41 GAGGATGAGCTGCGGGAGTTCTTCTCTCAGTACGGGGATGT GAGGATGAGCTGCGGGAGTTCTTCTCTCAGTATGGGGATGT < 41bp 1 0.519509063874428 1 0.0350258946418762 experiment 0.960981872251144 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TARDBP ENSG00000120948 CDS Human protein_coding chr1:11080572 chr1:11080584 synonymous SNV . 0 33 hm5C_associated_SNPs_19615 0 0 1 0 2 TARDBP chr1:11080656 5'GT 11080656 Upstream 73bp
chr6 158449875 158449875 1 + C G COAD 158449888 + 158449868 158449908 41 ATCACTGCCACTGACTTTTACCCTCTTCAGGAAGAGGCCAA ATCACTGGCACTGACTTTTACCCTCTTCAGGAAGAGGCCAA < 41bp 1 0.0628654771223201 1 0.0402891337871552 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158449888 chr6:158449875 nonsynonymous SNV 0.201 0 8 hm5C_associated_SNPs_19617 0 0 1 4 1 SYNJ2 chr6:158449788 3'AG 158449788 Downstream 88bp
chr20 37168565 37168565 1 + C T COAD 37168578 + 37168558 37168598 41 TCTGTGTCTGGCTGACAGAGCACCCTGATATGCTTGATGAA TCTGTGTTTGGCTGACAGAGCACCCTGATATGCTTGATGAA < 41bp 1 0.18664559492365 1 0.131997883319855 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37168578 chr20:37168565 synonymous SNV . 0 8 hm5C_associated_SNPs_19618 0 0 1 0 1 RALGAPB chr20:37168601 5'GT 37168601 Upstream 37bp
chrX 128691347 128691347 1 + G A COAD 128691345 + 128691325 128691365 41 GGGGACTGGATCAGAGAGCGCCGCTTTGAAATCCCTGATGA GGGGACTGGATCAGAGAGCGCCACTTTGAAATCCCTGATGA < 41bp 1 0.240446099859204 1 0.0455695986747742 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128691345 chrX:128691347 nonsynonymous SNV 0.807 1 23 hm5C_associated_SNPs_19619 0 0 1 0 2 OCRL chrX:128691302 3'AG 128691302 Downstream 46bp
chrX 128691347 128691347 1 + G A COAD 128691345 + 128691325 128691365 41 GGGGACTGGATCAGAGAGCGCCGCTTTGAAATCCCTGATGA GGGGACTGGATCAGAGAGCGCCACTTTGAAATCCCTGATGA < 41bp 1 0.240446099859204 1 0.0455695986747742 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128691345 chrX:128691347 nonsynonymous SNV 0.807 1 23 hm5C_associated_SNPs_19619 0 0 1 0 2 OCRL chrX:128691412 5'GT 128691412 Upstream 66bp
chr19 50912085 50912085 1 + T C COAD 50912092 + 50912072 50912112 41 CTTCTCCTCGCTGTACCCGTCCATCATGATGGCCCACAACC CTTCTCCTCGCTGCACCCGTCCATCATGATGGCCCACAACC < 41bp 1 0.0240249045342005 1 0.0375967621803284 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912092 chr19:50912085 nonsynonymous SNV 0.991 4 14 hm5C_associated_SNPs_19621 0 0 1 0 2 POLD1 chr19:50912042 3'AG 50912042 Downstream 44bp
chr19 50912085 50912085 1 + T C COAD 50912092 + 50912072 50912112 41 CTTCTCCTCGCTGTACCCGTCCATCATGATGGCCCACAACC CTTCTCCTCGCTGCACCCGTCCATCATGATGGCCCACAACC < 41bp 1 0.0240249045342005 1 0.0375967621803284 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912092 chr19:50912085 nonsynonymous SNV 0.991 4 14 hm5C_associated_SNPs_19621 0 0 1 0 2 POLD1 chr19:50912158 5'GT 50912158 Upstream 74bp
chr19 14020737 14020737 1 + C T COAD 14020742 + 14020722 14020762 41 GGCTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCA GGCTTTGGTCGGGGGTCAGCCCCCAGCCCTGGAGAAGCTCA < 41bp 1 0.44775625830122 1 0.747197449207306 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020742 chr19:14020737 synonymous SNV . 0 16 hm5C_associated_SNPs_19622 0 0 1 0 1 CC2D1A chr19:14020771 5'GT 14020771 Upstream 35bp
chr19 14020737 14020737 1 + C T COAD 14020743 + 14020723 14020763 41 GCTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAA GCTTTGGTCGGGGGTCAGCCCCCAGCCCTGGAGAAGCTCAA < 41bp 1 0.263359571079005 1 0.509347498416901 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020743 chr19:14020737 synonymous SNV . 0 15 hm5C_associated_SNPs_19623 0 0 1 0 1 CC2D1A chr19:14020771 5'GT 14020771 Upstream 35bp
chr19 14020737 14020737 1 + C T COAD 14020744 + 14020724 14020764 41 CTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAA CTTTGGTCGGGGGTCAGCCCCCAGCCCTGGAGAAGCTCAAA < 41bp 1 0.131976777530847 1 0.410099476575851 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020744 chr19:14020737 synonymous SNV . 0 14 hm5C_associated_SNPs_19624 0 0 1 0 1 CC2D1A chr19:14020771 5'GT 14020771 Upstream 35bp
chr19 14020737 14020737 1 + C T COAD 14020745 + 14020725 14020765 41 TTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAAG TTTGGTCGGGGGTCAGCCCCCAGCCCTGGAGAAGCTCAAAG < 41bp 1 0.446048095780597 1 0.43679141998291 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020745 chr19:14020737 synonymous SNV . 0 13 hm5C_associated_SNPs_19625 0 0 1 0 1 CC2D1A chr19:14020771 5'GT 14020771 Upstream 35bp
chr14 90867640 90867640 1 + C T COAD 90867648 + 90867628 90867668 41 TGATAAAGATGGCGATGGCACCATCACAACAAAGGAACTTG TGATAAAGATGGTGATGGCACCATCACAACAAAGGAACTTG < 41bp 1 0.0675624595270005 1 0.0989518761634827 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CALM1 ENSG00000198668 CDS Human protein_coding chr14:90867648 chr14:90867640 synonymous SNV . 0 13 hm5C_associated_SNPs_19626 1 0 1 0 1 CALM1 chr14:90867603 3'AG 90867603 Downstream 38bp
chr14 90867640 90867640 1 + C T COAD 90867649 + 90867629 90867669 41 GATAAAGATGGCGATGGCACCATCACAACAAAGGAACTTGG GATAAAGATGGTGATGGCACCATCACAACAAAGGAACTTGG < 41bp 1 0.436883489435176 1 0.382104426622391 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CALM1 ENSG00000198668 CDS Human protein_coding chr14:90867649 chr14:90867640 synonymous SNV . 0 12 hm5C_associated_SNPs_19627 1 0 1 0 1 CALM1 chr14:90867603 3'AG 90867603 Downstream 38bp
chr12 6646155 6646155 1 + C G COAD 6646142 + 6646122 6646162 41 CGCTGAGTACGTCGTGGAGTCCACTGGCGTCTTCACCACCA CGCTGAGTACGTCGTGGAGTCCACTGGCGTCTTGACCACCA < 41bp 1 0.446230483050657 1 0.161671191453934 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6646142 chr12:6646155 nonsynonymous SNV 0.998 2 34 hm5C_associated_SNPs_19628 0 0 1 0 2 GAPDH chr12:6646086 3'AG 6646086 Downstream 70bp
chr12 6646155 6646155 1 + C G COAD 6646142 + 6646122 6646162 41 CGCTGAGTACGTCGTGGAGTCCACTGGCGTCTTCACCACCA CGCTGAGTACGTCGTGGAGTCCACTGGCGTCTTGACCACCA < 41bp 1 0.446230483050657 1 0.161671191453934 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6646142 chr12:6646155 nonsynonymous SNV 0.998 2 34 hm5C_associated_SNPs_19628 0 0 1 0 2 GAPDH chr12:6646176 5'GT 6646176 Upstream 22bp
chr7 155532689 155532689 1 + T C COAD 155532698 + 155532678 155532718 41 CAGCAGCCGGATGCAGTGCCCCCAGCGCCAGGGGCTCCGGC CAGCAGCCGGACGCAGTGCCCCCAGCGCCAGGGGCTCCGGC < 41bp 1 0.314229905178768 1 0.340981900691986 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM33 ENSG00000184863 CDS Human protein_coding chr7:155532698 chr7:155532689 nonsynonymous SNV 0.975 1 12 hm5C_associated_SNPs_19629 0 0 1 0 1 RBM33 chr7:155532720 5'GT 155532720 Upstream 32bp
chr16 2569578 2569578 1 + C T COAD 2569563 + 2569543 2569583 41 AGCTTCCTCCAGCTGGGCGCCGGCCTGAGCGTGGGCCTGAG AGCTTCCTCCAGCTGGGCGCCGGCCTGAGCGTGGGTCTGAG < 41bp 1 0.393471155578327 1 0.664148271083832 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V0C ENSG00000185883 CDS Human protein_coding chr16:2569563 chr16:2569578 synonymous SNV . 0 36 hm5C_associated_SNPs_19630 0 0 1 0 1 ATP6V0C chr16:2569542 3'AG 2569542 Downstream 37bp
chr9 137021693 137021693 1 + A T COAD 137021694 + 137021674 137021714 41 TTCAGACGAAAGAGATTGTACAGAAACTACAAGGCCACACA TTCAGACGAAAGAGATTGTTCAGAAACTACAAGGCCACACA < 41bp 1 0.704262062018088 1 0.582120299339294 experiment 0.591475875963824 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR5 ENSG00000196363 CDS Human protein_coding chr9:137021694 chr9:137021693 synonymous SNV . 0 20 hm5C_associated_SNPs_19631 0 0 1 0 2 WDR5 chr9:137021628 3'AG 137021628 Downstream 66bp
chr9 137021693 137021693 1 + A T COAD 137021694 + 137021674 137021714 41 TTCAGACGAAAGAGATTGTACAGAAACTACAAGGCCACACA TTCAGACGAAAGAGATTGTTCAGAAACTACAAGGCCACACA < 41bp 1 0.704262062018088 1 0.582120299339294 experiment 0.591475875963824 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR5 ENSG00000196363 CDS Human protein_coding chr9:137021694 chr9:137021693 synonymous SNV . 0 20 hm5C_associated_SNPs_19631 0 0 1 0 2 WDR5 chr9:137021715 5'GT 137021715 Upstream 23bp
chr5 71648502 71648502 1 + A G COAD 71648516 + 71648496 71648536 41 TGGAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA TGGAAAGCCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA < 41bp 1 0.418146270790024 1 0.562787592411041 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71648516 chr5:71648502 nonsynonymous SNV 0.068 0 7 hm5C_associated_SNPs_19632 0 0 1 0 2 PTCD2 chr5:71648468 3'AG 71648468 Downstream 35bp
chr5 71648502 71648502 1 + A G COAD 71648516 + 71648496 71648536 41 TGGAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA TGGAAAGCCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA < 41bp 1 0.418146270790024 1 0.562787592411041 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71648516 chr5:71648502 nonsynonymous SNV 0.068 0 7 hm5C_associated_SNPs_19632 0 0 1 0 2 PTCD2 chr5:71648581 5'GT 71648581 Upstream 80bp
chr3 196533536 196533536 1 + G A COAD 196533533 + 196533513 196533553 41 ACTGCTCCTCCCGTTATTGCCCCGCGACCGGATCATACGAA ACTGCTCCTCCCGTTATTGCCCCACGACCGGATCATACGAA < 41bp 1 0.255238956746157 1 0.643704414367676 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAK2 ENSG00000180370 CDS Human protein_coding chr3:196533533 chr3:196533536 synonymous SNV . 0 24 hm5C_associated_SNPs_19633 0 0 1 0 2 PAK2 chr3:196533450 3'AG 196533450 Downstream 87bp
chr3 196533536 196533536 1 + G A COAD 196533533 + 196533513 196533553 41 ACTGCTCCTCCCGTTATTGCCCCGCGACCGGATCATACGAA ACTGCTCCTCCCGTTATTGCCCCACGACCGGATCATACGAA < 41bp 1 0.255238956746157 1 0.643704414367676 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAK2 ENSG00000180370 CDS Human protein_coding chr3:196533533 chr3:196533536 synonymous SNV . 0 24 hm5C_associated_SNPs_19633 0 0 1 0 2 PAK2 chr3:196533557 5'GT 196533557 Upstream 22bp
chr15 63340901 63340901 1 + G A COAD 63340906 + 63340886 63340926 41 GAGAGGAAGCTGAGGGAGACCGTAAGGGATACACCCATCAC GAGAGGAAGCTGAGGAAGACCGTAAGGGATACACCCATCAC < 41bp 1 0.739262810167497 1 0.29947766661644 experiment 0.521474379665007 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPM1 ENSG00000140416 CDS Human protein_coding chr15:63340906 chr15:63340901 nonsynonymous SNV 1.000 0 16 hm5C_associated_SNPs_19634 0 0 1 0 1 TPM1 chr15:63340906 5'GT 63340906 Upstream 6bp
chr22 22040820 22040820 1 + A C COAD 22040825 + 22040805 22040845 41 TTCACCTCCACCGCGATGGTCCCGGAGACCACACATGAAGC TTCACCTCCACCGCGCTGGTCCCGGAGACCACACATGAAGC < 41bp 1 0.291396219125371 1 0.197975695133209 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040825 chr22:22040820 nonsynonymous SNV 0.030 2 16 hm5C_associated_SNPs_19636 0 0 1 0 2 PPIL2 chr22:22040772 3'AG 22040772 Downstream 49bp
chr22 22040820 22040820 1 + A C COAD 22040825 + 22040805 22040845 41 TTCACCTCCACCGCGATGGTCCCGGAGACCACACATGAAGC TTCACCTCCACCGCGCTGGTCCCGGAGACCACACATGAAGC < 41bp 1 0.291396219125371 1 0.197975695133209 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040825 chr22:22040820 nonsynonymous SNV 0.030 2 16 hm5C_associated_SNPs_19636 0 0 1 0 2 PPIL2 chr22:22040847 5'GT 22040847 Upstream 28bp
chr22 42273334 42273334 1 + C T COAD 42273332 + 42273312 42273352 41 TCCTGTGCCTCTCCTTTAACCCCCTGACTTCCCTGCTGCAG TCCTGTGCCTCTCCTTTAACCCTCTGACTTCCCTGCTGCAG < 41bp 1 0.0926865451922525 1 0.0191623270511627 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42273332 chr22:42273334 synonymous SNV . 0 23 hm5C_associated_SNPs_19637 0 0 1 0 1 SREBF2 chr22:42273425 5'GT 42273425 Upstream 92bp
chr3 25542773 25542773 1 + G A COAD 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACCAGGAATCGATGCCAATACTATCGACTCCAGAAGTGCTT < 41bp 1 0.172839097671543 1 0.0728573501110077 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542773 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_19638 0 0 1 0 1 RARB chr3:25542814 5'GT 25542814 Upstream 42bp
chr15 63354448 63354448 1 + T A COAD 63354456 + 63354436 63354476 41 ATGAGGAAGAGATCAAGGTCCTTTCCGACAAGCTGAAGGAG ATGAGGAAGAGAACAAGGTCCTTTCCGACAAGCTGAAGGAG < 41bp 1 0.0577551336996088 1 0.152798503637314 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPM1 ENSG00000140416 CDS Human protein_coding chr15:63354456 chr15:63354448 nonsynonymous SNV 1.000 5 13 hm5C_associated_SNPs_19639 0 0 1 0 2 TPM1 chr15:63354414 3'AG 63354414 Downstream 35bp
chr15 63354448 63354448 1 + T A COAD 63354456 + 63354436 63354476 41 ATGAGGAAGAGATCAAGGTCCTTTCCGACAAGCTGAAGGAG ATGAGGAAGAGAACAAGGTCCTTTCCGACAAGCTGAAGGAG < 41bp 1 0.0577551336996088 1 0.152798503637314 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPM1 ENSG00000140416 CDS Human protein_coding chr15:63354456 chr15:63354448 nonsynonymous SNV 1.000 5 13 hm5C_associated_SNPs_19639 0 0 1 0 2 TPM1 chr15:63354476 5'GT 63354476 Upstream 29bp
chr16 3707246 3707246 1 + G T COAD 3707253 + 3707233 3707273 41 AGACCCTCCCAGTGGTCATCCATCCGCCTGTGGACAAGCCC AGACCCTCCCAGTTGTCATCCATCCGCCTGTGGACAAGCCC < 41bp 1 0.120747560402106 1 0.0894695818424225 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707253 chr16:3707246 nonsynonymous SNV 0.824 4 14 hm5C_associated_SNPs_19640 0 0 1 0 2 DNASE1 chr16:3707188 3'AG 3707188 Downstream 59bp
chr16 3707246 3707246 1 + G T COAD 3707253 + 3707233 3707273 41 AGACCCTCCCAGTGGTCATCCATCCGCCTGTGGACAAGCCC AGACCCTCCCAGTTGTCATCCATCCGCCTGTGGACAAGCCC < 41bp 1 0.120747560402106 1 0.0894695818424225 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707253 chr16:3707246 nonsynonymous SNV 0.824 4 14 hm5C_associated_SNPs_19640 0 0 1 0 2 DNASE1 chr16:3707342 5'GT 3707342 Upstream 97bp
chr8 48641569 48641569 1 + T A COAD 48641587 + 48641567 48641607 41 CCTGGACTGCCGCTCAAGACCGCAGTGCAGAGTGAAGGTCA CCAGGACTGCCGCTCAAGACCGCAGTGCAGAGTGAAGGTCA < 41bp 1 0.645022369571168 1 0.218952864408493 experiment 0.709955260857664 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPIDR ENSG00000164808 CDS Human protein_coding chr8:48641587 chr8:48641569 nonsynonymous SNV 0.989 4 3 hm5C_associated_SNPs_19644 0 0 1 0 3 SPIDR chr8:48641495 3'AG 48641495 Downstream 75bp
chr8 48641569 48641569 1 + T A COAD 48641587 + 48641567 48641607 41 CCTGGACTGCCGCTCAAGACCGCAGTGCAGAGTGAAGGTCA CCAGGACTGCCGCTCAAGACCGCAGTGCAGAGTGAAGGTCA < 41bp 1 0.645022369571168 1 0.218952864408493 experiment 0.709955260857664 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPIDR ENSG00000164808 CDS Human protein_coding chr8:48641587 chr8:48641569 nonsynonymous SNV 0.989 4 3 hm5C_associated_SNPs_19644 0 0 1 0 3 SPIDR chr8:48641609 5'GT 48641609 Upstream 41bp
chr8 48641569 48641569 1 + T A COAD 48641587 + 48641567 48641607 41 CCTGGACTGCCGCTCAAGACCGCAGTGCAGAGTGAAGGTCA CCAGGACTGCCGCTCAAGACCGCAGTGCAGAGTGAAGGTCA < 41bp 1 0.645022369571168 1 0.218952864408493 experiment 0.709955260857664 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPIDR ENSG00000164808 CDS Human protein_coding chr8:48641587 chr8:48641569 nonsynonymous SNV 0.989 4 3 hm5C_associated_SNPs_19644 0 0 1 0 3 SPIDR chr8:48641664 5'GT 48641664 Upstream 96bp
chr19 42406708 42406708 1 + T A COAD 42406702 + 42406682 42406722 41 GTTTGATGGTGCTGAGGGCTCCTGGTTCCAGAAAATCTCCT GTTTGATGGTGCTGAGGGCTCCTGGTACCAGAAAATCTCCT < 41bp 1 0.258006022239778 1 0.351497828960419 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42406702 chr19:42406708 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_19646 0 0 1 0 1 ARHGEF1 chr19:42406683 3'AG 42406683 Downstream 26bp
chr9 139244090 139244090 1 + G A COAD 139244104 + 139244084 139244124 41 AGCAGGGACTCGCTACCCCTCCCCGTGAGGAGCAGGAAGTA AGCAGGAACTCGCTACCCCTCCCCGTGAGGAGCAGGAAGTA < 41bp 1 0.368344880417664 1 0.430926203727722 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139244104 chr9:139244090 nonsynonymous SNV 0.942 1 7 hm5C_associated_SNPs_19649 0 0 1 0 1 GPSM1 chr9:139244039 3'AG 139244039 Downstream 52bp
chr1 150280539 150280539 1 + G A COAD 150280549 + 150280529 150280569 41 ATTATGAGAAGCCATGCCGCCGGCGACAGAGGGAAAGCTAT ATTATGAGAAACCATGCCGCCGGCGACAGAGGGAAAGCTAT < 41bp 1 0.675265837227999 1 0.64592981338501 experiment 0.649468325544002 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPS21 ENSG00000187145 CDS Human other chr1:150280549 chr1:150280539 synonymous SNV . 0 11 hm5C_associated_SNPs_19650 0 0 1 0 1 MRPS21 chr1:150280482 3'AG 150280482 Downstream 58bp
chr22 42273331 42273331 1 + C T COAD 42273332 + 42273312 42273352 41 TCCTGTGCCTCTCCTTTAACCCCCTGACTTCCCTGCTGCAG TCCTGTGCCTCTCCTTTAATCCCCTGACTTCCCTGCTGCAG < 41bp 1 0.303825408462937 1 0.0500078201293945 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42273332 chr22:42273331 synonymous SNV . 0 20 hm5C_associated_SNPs_19653 0 0 1 0 2 SREBF2 chr22:42273233 3'AG 42273233 Downstream 99bp
chr22 42273331 42273331 1 + C T COAD 42273332 + 42273312 42273352 41 TCCTGTGCCTCTCCTTTAACCCCCTGACTTCCCTGCTGCAG TCCTGTGCCTCTCCTTTAATCCCCTGACTTCCCTGCTGCAG < 41bp 1 0.303825408462937 1 0.0500078201293945 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42273332 chr22:42273331 synonymous SNV . 0 20 hm5C_associated_SNPs_19653 0 0 1 0 2 SREBF2 chr22:42273425 5'GT 42273425 Upstream 95bp
chr11 46396322 46396322 1 + G A COAD 46396330 + 46396310 46396350 41 CTCCAGTGTGATGGAATGGACTTGACTCCCAAGATCCAGGA CTCCAGTGTGATAGAATGGACTTGACTCCCAAGATCCAGGA < 41bp 1 0.381468264404203 1 0.0507414042949677 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46396330 chr11:46396322 nonsynonymous SNV 0.946 4 13 hm5C_associated_SNPs_19654 0 0 1 0 1 DGKZ chr11:46396389 5'GT 46396389 Upstream 68bp
chr19 45260402 45260402 1 + C T COAD 45260397 + 45260377 45260417 41 CCGCTCACCTGGCGTGCGAGCACCGCAGCCCGACCTGCCTG CCGCTCACCTGGCGTGCGAGCACCGTAGCCCGACCTGCCTG < 41bp 1 0.749516950815362 1 0.545888543128967 experiment 0.500966098369277 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCL3 ENSG00000069399 CDS Human protein_coding chr19:45260397 chr19:45260402 synonymous SNV . 0 26 hm5C_associated_SNPs_19655 0 0 0 0 1 BCL3 chr19:45260478 5'GT 45260478 Upstream 77bp
chr1 109342878 109342878 1 + C T COAD 109342888 + 109342868 109342908 41 AAAAGAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGA AAAAGAATGGTCATATTGTTCCCAGTGTCCAGCAGTATGGA < 41bp 1 0.497010624768971 1 0.0275307595729828 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109342888 chr1:109342878 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_19656 0 0 0 0 2 STXBP3 chr1:109342842 3'AG 109342842 Downstream 37bp
chr1 109342878 109342878 1 + C T COAD 109342888 + 109342868 109342908 41 AAAAGAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGA AAAAGAATGGTCATATTGTTCCCAGTGTCCAGCAGTATGGA < 41bp 1 0.497010624768971 1 0.0275307595729828 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109342888 chr1:109342878 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_19656 0 0 0 0 2 STXBP3 chr1:109342927 5'GT 109342927 Upstream 50bp
chr1 109342878 109342878 1 + C T COAD 109342889 + 109342869 109342909 41 AAAGAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGAA AAAGAATGGTCATATTGTTCCCAGTGTCCAGCAGTATGGAA < 41bp 1 0.382629520711448 1 0.0530332922935486 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109342889 chr1:109342878 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_19657 0 0 0 0 2 STXBP3 chr1:109342842 3'AG 109342842 Downstream 37bp
chr1 109342878 109342878 1 + C T COAD 109342889 + 109342869 109342909 41 AAAGAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGAA AAAGAATGGTCATATTGTTCCCAGTGTCCAGCAGTATGGAA < 41bp 1 0.382629520711448 1 0.0530332922935486 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109342889 chr1:109342878 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_19657 0 0 0 0 2 STXBP3 chr1:109342927 5'GT 109342927 Upstream 50bp
chr12 57597296 57597296 1 + G A COAD 57597276 + 57597256 57597296 41 GACGCCGACTGCATGGACGGCAGCGACGAGGAGGCCTGCGG GACGCCGACTGCATGGACGGCAGCGACGAGGAGGCCTGCGA < 41bp 1 0.204167693565062 1 0.373159855604172 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57597276 chr12:57597296 nonsynonymous SNV 0.977 1 41 hm5C_associated_SNPs_19658 0 0 1 0 1 LRP1 chr12:57597304 5'GT 57597304 Upstream 9bp
chr6 31914178 31914178 1 + C T COAD 31914162 + 31914142 31914182 41 CTCTTCAGGTGTGACCACCACTCCATGGTCTTTGGCCCGGC CTCTTCAGGTGTGACCACCACTCCATGGTCTTTGGCTCGGC < 41bp 1 0.692826648047639 1 0.983625531196594 experiment 0.614346703904721 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control CFB ENSG00000243649;ENSG00000244255 CDS Human other chr6:31914162 chr6:31914178 synonymous SNV . 0 37 hm5C_associated_SNPs_19659 0 0 1 0 1 CFB chr6:31914150 3'AG 31914150 Downstream 29bp
chr12 107254074 107254074 1 + T C COAD 107254054 + 107254034 107254074 41 CTGTTTTTGCAGTGGATAGTCTGCTGAAATACACTGGCTAT CTGTTTTTGCAGTGGATAGTCTGCTGAAATACACTGGCTAC < 41bp 1 0.677750755736086 1 0.608401894569397 experiment 0.644498488527827 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107254054 chr12:107254074 synonymous SNV . 0 41 hm5C_associated_SNPs_19660 0 0 1 0 1 RIC8B chr12:107254046 3'AG 107254046 Downstream 29bp
chrX 48457292 48457292 1 + G T COAD 48457272 + 48457252 48457292 41 CCAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTG CCAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTT < 41bp 1 0.635745677463278 1 0.901914358139038 experiment 0.728508645073445 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457272 chrX:48457292 nonsynonymous SNV 0.998 1 41 hm5C_associated_SNPs_19661 0 0 1 0 1 WDR13 chrX:48457345 5'GT 48457345 Upstream 54bp
chrX 48457292 48457292 1 + G T COAD 48457273 + 48457253 48457293 41 CAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTGC CAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTTC < 41bp 1 0.641662078455246 1 0.722640573978424 experiment 0.716675843089507 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457273 chrX:48457292 nonsynonymous SNV 0.998 1 40 hm5C_associated_SNPs_19662 0 0 1 0 1 WDR13 chrX:48457345 5'GT 48457345 Upstream 54bp
chr10 70101358 70101358 1 + A G COAD 70101359 + 70101339 70101379 41 AAGAACATCGATATATTGAACTCTTCTTGAATTCTACTCCT AAGAACATCGATATATTGAGCTCTTCTTGAATTCTACTCCT < 41bp 1 0.272361517432439 1 0.0424448251724243 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPH3 ENSG00000096746 CDS Human protein_coding chr10:70101359 chr10:70101358 synonymous SNV . 0 20 hm5C_associated_SNPs_19665 0 0 1 0 2 HNRNPH3 chr10:70101342 3'AG 70101342 Downstream 17bp
chr10 70101358 70101358 1 + A G COAD 70101359 + 70101339 70101379 41 AAGAACATCGATATATTGAACTCTTCTTGAATTCTACTCCT AAGAACATCGATATATTGAGCTCTTCTTGAATTCTACTCCT < 41bp 1 0.272361517432439 1 0.0424448251724243 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPH3 ENSG00000096746 CDS Human protein_coding chr10:70101359 chr10:70101358 synonymous SNV . 0 20 hm5C_associated_SNPs_19665 0 0 1 0 2 HNRNPH3 chr10:70101437 5'GT 70101437 Upstream 80bp
chr3 51624522 51624522 1 + A T COAD 51624531 + 51624511 51624551 41 GGAGGAGGAGGAGGAGGTGGCAGTGGAGGAGTGTGACAGGG GGAGGAGGAGGTGGAGGTGGCAGTGGAGGAGTGTGACAGGG < 41bp 1 0.665447612606056 1 0.686289489269257 experiment 0.669104774787888 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51624531 chr3:51624522 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_19666 0 0 1 0 1 RAD54L2 chr3:51624575 5'GT 51624575 Upstream 54bp
chr16 722937 722937 1 + A C COAD 722951 + 722931 722971 41 CATTACATGGACGGGCAGACCCCCTGCCTCTTTGTCTCCTC CATTACCTGGACGGGCAGACCCCCTGCCTCTTTGTCTCCTC < 41bp 1 0.339544883786577 1 0.249110460281372 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:722951 chr16:722937 nonsynonymous SNV 0.951 1 7 hm5C_associated_SNPs_19668 0 0 1 0 1 RHOT2 chr16:722928 3'AG 722928 Downstream 10bp
chr15 32921003 32921003 1 + G C COAD 32920986 + 32920966 32921006 41 CAGAACACCTTCTATTACACCTCAAGAAGAAAGAATTGGTA CAGAACACCTTCTATTACACCTCAAGAAGAAAGAATTCGTA < 41bp 1 0.425591033429792 1 0.351754784584045 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP11A ENSG00000198826 CDS Human protein_coding chr15:32920986 chr15:32921003 nonsynonymous SNV 0.019 3 38 hm5C_associated_SNPs_19669 0 0 0 0 2 ARHGAP11A chr15:32920929 3'AG 32920929 Downstream 75bp
chr15 32921003 32921003 1 + G C COAD 32920986 + 32920966 32921006 41 CAGAACACCTTCTATTACACCTCAAGAAGAAAGAATTGGTA CAGAACACCTTCTATTACACCTCAAGAAGAAAGAATTCGTA < 41bp 1 0.425591033429792 1 0.351754784584045 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP11A ENSG00000198826 CDS Human protein_coding chr15:32920986 chr15:32921003 nonsynonymous SNV 0.019 3 38 hm5C_associated_SNPs_19669 0 0 0 0 2 ARHGAP11A chr15:32921003 5'GT 32921003 Upstream 1bp
chr8 41355101 41355101 1 + G A COAD 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTCGGCGACCAGTCATATCTCGAAGGTTGT < 41bp 1 0.168173102639989 1 0.188007533550262 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355101 nonsynonymous SNV 0.968 1 19 hm5C_associated_SNPs_19670 0 0 1 2 2 GOLGA7 chr8:41355028 3'AG 41355028 Downstream 74bp
chr8 41355101 41355101 1 + G A COAD 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTCGGCGACCAGTCATATCTCGAAGGTTGT < 41bp 1 0.168173102639989 1 0.188007533550262 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355101 nonsynonymous SNV 0.968 1 19 hm5C_associated_SNPs_19670 0 0 1 2 2 GOLGA7 chr8:41355180 5'GT 41355180 Upstream 80bp
chr8 124146381 124146381 1 + G A COAD 124146369 + 124146349 124146389 41 CATAGGTATATATGAGAGATCGAGAAATTGCTGCCACAGCC CATAGGTATATATGAGAGATCGAGAAATTGCTACCACAGCC < 41bp 1 0.798241898340973 1 0.622787773609161 experiment 0.403516203318055 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124146369 chr8:124146381 nonsynonymous SNV 0.994 0 33 hm5C_associated_SNPs_19672 0 0 1 0 2 TBC1D31 chr8:124146354 3'AG 124146354 Downstream 28bp
chr8 124146381 124146381 1 + G A COAD 124146369 + 124146349 124146389 41 CATAGGTATATATGAGAGATCGAGAAATTGCTGCCACAGCC CATAGGTATATATGAGAGATCGAGAAATTGCTACCACAGCC < 41bp 1 0.798241898340973 1 0.622787773609161 experiment 0.403516203318055 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124146369 chr8:124146381 nonsynonymous SNV 0.994 0 33 hm5C_associated_SNPs_19672 0 0 1 0 2 TBC1D31 chr8:124146446 5'GT 124146446 Upstream 66bp
chr13 31903690 31903690 1 + C T COAD 31903694 + 31903674 31903714 41 CATCAAGTTCCCATATCGTTCCACAAACACTGGAACATCGA CATCAAGTTCCCATATTGTTCCACAAACACTGGAACATCGA < 41bp 1 0.428641577292033 1 0.129657834768295 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31903694 chr13:31903690 nonsynonymous SNV 0.927 4 17 hm5C_associated_SNPs_19673 0 0 0 2 1 B3GLCT chr13:31903638 3'AG 31903638 Downstream 53bp
chr12 131488796 131488796 1 + G A COAD 131488788 + 131488768 131488808 41 TTCCTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCA TTCCTCCCATTACCGCTTCCCGGCCCACAGGCAGAGCTTCA < 41bp 1 0.215391763513902 1 0.473623096942902 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488788 chr12:131488796 nonsynonymous SNV 0.024 4 29 hm5C_associated_SNPs_19674 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 46bp
chr12 131488796 131488796 1 + G A COAD 131488791 + 131488771 131488811 41 CTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCC CTCCCATTACCGCTTCCCGGCCCACAGGCAGAGCTTCATCC < 41bp 1 0.0360613180033132 1 0.0239941775798798 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488791 chr12:131488796 nonsynonymous SNV 0.024 4 26 hm5C_associated_SNPs_19675 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 46bp
chr12 131488796 131488796 1 + G A COAD 131488792 + 131488772 131488812 41 TCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCA TCCCATTACCGCTTCCCGGCCCACAGGCAGAGCTTCATCCA < 41bp 1 0.317936962068999 1 0.133228093385696 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488792 chr12:131488796 nonsynonymous SNV 0.024 4 25 hm5C_associated_SNPs_19676 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 46bp
chr12 131488796 131488796 1 + G A COAD 131488793 + 131488773 131488813 41 CCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAG CCCATTACCGCTTCCCGGCCCACAGGCAGAGCTTCATCCAG < 41bp 1 0.414246000474428 1 0.148070096969604 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488793 chr12:131488796 nonsynonymous SNV 0.024 4 24 hm5C_associated_SNPs_19677 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 46bp
chr12 131488796 131488796 1 + G A COAD 131488795 + 131488775 131488815 41 CATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAGAT CATTACCGCTTCCCGGCCCACAGGCAGAGCTTCATCCAGAT < 41bp 1 0.46201417388814 1 0.795790791511536 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488795 chr12:131488796 nonsynonymous SNV 0.024 4 22 hm5C_associated_SNPs_19678 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 46bp
chr12 131488796 131488796 1 + G A COAD 131488799 + 131488779 131488819 41 ACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAGATCCCC ACCGCTTCCCGGCCCACAGGCAGAGCTTCATCCAGATCCCC < 41bp 1 0.425656439698631 1 0.680865883827209 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488799 chr12:131488796 nonsynonymous SNV 0.024 4 18 hm5C_associated_SNPs_19679 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 46bp
chr19 579609 579609 1 + C T COAD 579629 + 579609 579649 41 CGTGGTGCTGAAGGAGGACGCGCTGCCCGGCCAGAAAACGG TGTGGTGCTGAAGGAGGACGCGCTGCCCGGCCAGAAAACGG < 41bp 1 0.454694494364171 1 0.436221361160278 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579629 chr19:579609 synonymous SNV . 0 1 hm5C_associated_SNPs_19681 0 0 1 0 1 BSG chr19:579656 5'GT 579656 Upstream 48bp
chr16 2079755 2079755 1 + G A COAD 2079750 + 2079730 2079770 41 CCGAAGCCAGACTGGGCACACACCGGCAGCCACAGCTCCGA CCGAAGCCAGACTGGGCACACACCGACAGCCACAGCTCCGA < 41bp 1 0.644030381207458 1 0.0919854342937469 experiment 0.711939237585083 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC9A3R2 ENSG00000065054 CDS Human protein_coding chr16:2079750 chr16:2079755 nonsynonymous SNV 0.000 0 26 hm5C_associated_SNPs_19682 0 0 1 0 1 SLC9A3R2 chr16:2079783 5'GT 2079783 Upstream 29bp
chr3 184042675 184042675 1 + C T COAD 184042681 + 184042661 184042701 41 GGCAGGCAGAGGAACGAGGACGCCTGAAGGAAGAGCTGGAA GGCAGGCAGAGGAATGAGGACGCCTGAAGGAAGAGCTGGAA < 41bp 1 0.476973377875804 1 0.582316100597382 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042681 chr3:184042675 stopgain 0.991 0 15 hm5C_associated_SNPs_19687 0 0 1 0 1 EIF4G1 chr3:184042666 3'AG 184042666 Downstream 10bp
chr3 184042675 184042675 1 + C T COAD 184042684 + 184042664 184042704 41 AGGCAGAGGAACGAGGACGCCTGAAGGAAGAGCTGGAAGAG AGGCAGAGGAATGAGGACGCCTGAAGGAAGAGCTGGAAGAG < 41bp 1 0.760990278721218 1 0.68169766664505 experiment 0.478019442557564 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042684 chr3:184042675 stopgain 0.991 0 12 hm5C_associated_SNPs_19688 0 0 1 0 1 EIF4G1 chr3:184042666 3'AG 184042666 Downstream 10bp
chr5 148808549 148808549 1 + A G COAD 148808551 + 148808531 148808571 41 GTTGGGAGTCTGAGATGAAGCACTGTAGCTCAGGAAGAGAG GTTGGGAGTCTGAGATGAGGCACTGTAGCTCAGGAAGAGAG < 41bp 1 0.463530891098651 1 0.144989401102066 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CARMN;MIR143 ENSG00000208035 ncRNA_exonic Human other chr5:148808551 chr5:148808549 . . 0 19 hm5C_associated_SNPs_19689 0 0 1 0 1 CARMN chr5:148808602 5'GT 148808602 Upstream 54bp
chr5 148808549 148808549 1 + A G COAD 148808553 + 148808533 148808573 41 TGGGAGTCTGAGATGAAGCACTGTAGCTCAGGAAGAGAGAA TGGGAGTCTGAGATGAGGCACTGTAGCTCAGGAAGAGAGAA < 41bp 1 0.347478486064196 1 0.0452137291431427 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CARMN;MIR143 ENSG00000208035 ncRNA_exonic Human other chr5:148808553 chr5:148808549 . . 0 17 hm5C_associated_SNPs_19690 0 0 1 0 1 CARMN chr5:148808602 5'GT 148808602 Upstream 54bp
chr5 148808549 148808549 1 + A G COAD 148808559 + 148808539 148808579 41 TCTGAGATGAAGCACTGTAGCTCAGGAAGAGAGAAGTTGTT TCTGAGATGAGGCACTGTAGCTCAGGAAGAGAGAAGTTGTT < 41bp 1 0.64502519192434 1 0.0480276346206665 experiment 0.709949616151319 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CARMN;MIR143 ENSG00000208035 ncRNA_exonic Human other chr5:148808559 chr5:148808549 . . 0 11 hm5C_associated_SNPs_19691 0 0 1 0 1 CARMN chr5:148808602 5'GT 148808602 Upstream 54bp
chr9 129458212 129458212 1 + C T COAD 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGCCCCTATGGCAGCAGCGACCCCTTCCAGCAGGG < 41bp 1 0.556227234771055 1 0.652734398841858 experiment 0.88754553045789 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458212 synonymous SNV . 0 15 hm5C_associated_SNPs_19692 0 0 0 0 3 LMX1B chr9:129458118 3'AG 129458118 Downstream 95bp
chr9 129458212 129458212 1 + C T COAD 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGCCCCTATGGCAGCAGCGACCCCTTCCAGCAGGG < 41bp 1 0.556227234771055 1 0.652734398841858 experiment 0.88754553045789 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458212 synonymous SNV . 0 15 hm5C_associated_SNPs_19692 0 0 0 0 3 LMX1B chr9:129458261 5'GT 129458261 Upstream 50bp
chr9 129458212 129458212 1 + C T COAD 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGCCCCTATGGCAGCAGCGACCCCTTCCAGCAGGG < 41bp 1 0.556227234771055 1 0.652734398841858 experiment 0.88754553045789 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458212 synonymous SNV . 0 15 hm5C_associated_SNPs_19692 0 0 0 0 3 LMX1B chr9:129458282 5'GT 129458282 Upstream 71bp
chrX 57405161 57405161 1 + C T COAD 57405181 + 57405161 57405201 41 CGTTATGCTGAAGACCTGGCCCCCATGTTGAAGGTCATGGC TGTTATGCTGAAGACCTGGCCCCCATGTTGAAGGTCATGGC < 41bp 1 0.532413668223638 1 0.238593965768814 experiment 0.935172663552724 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57405181 chrX:57405161 nonsynonymous SNV 0.237 3 1 hm5C_associated_SNPs_19693 0 0 0 0 2 FAAH2 chrX:57405084 3'AG 57405084 Downstream 78bp
chrX 57405161 57405161 1 + C T COAD 57405181 + 57405161 57405201 41 CGTTATGCTGAAGACCTGGCCCCCATGTTGAAGGTCATGGC TGTTATGCTGAAGACCTGGCCCCCATGTTGAAGGTCATGGC < 41bp 1 0.532413668223638 1 0.238593965768814 experiment 0.935172663552724 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57405181 chrX:57405161 nonsynonymous SNV 0.237 3 1 hm5C_associated_SNPs_19693 0 0 0 0 2 FAAH2 chrX:57405219 5'GT 57405219 Upstream 59bp
chr6 160481649 160481649 1 + G T COAD 160481661 + 160481641 160481681 41 AAATTCCTGCATCAAGATATCGACTCTGGGCAAGGGATCCG AAATTCCTTCATCAAGATATCGACTCTGGGCAAGGGATCCG < 41bp 1 0.139230178086723 1 0.36960780620575 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160481661 chr6:160481649 synonymous SNV . 0 9 hm5C_associated_SNPs_19694 0 0 1 0 1 IGF2R chr6:160481579 3'AG 160481579 Downstream 71bp
chrX 37984553 37984553 1 + A G COAD 37984551 + 37984531 37984571 41 GATTGTTTTTTCTCATGCAGCTACCTGCTCCCTGATGATAG GATTGTTTTTTCTCATGCAGCTGCCTGCTCCCTGATGATAG < 41bp 1 0.168312614463708 1 0.106380522251129 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37984551 chrX:37984553 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_19695 0 0 0 0 1 SYTL5 chrX:37984551 3'AG 37984551 Downstream 3bp
chr10 103291074 103291074 1 + T G COAD 103291084 + 103291064 103291104 41 TATCCTAAAATTATACAAGACATTGAGGTAAGAATCTATGT TATCCTAAAAGTATACAAGACATTGAGGTAAGAATCTATGT < 41bp 1 0.0594281935377365 1 0.0188096165657043 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BTRC ENSG00000166167 CDS Human protein_coding chr10:103291084 chr10:103291074 nonsynonymous SNV 0.999 4 11 hm5C_associated_SNPs_19696 0 0 1 0 2 BTRC chr10:103290994 3'AG 103290994 Downstream 81bp
chr10 103291074 103291074 1 + T G COAD 103291084 + 103291064 103291104 41 TATCCTAAAATTATACAAGACATTGAGGTAAGAATCTATGT TATCCTAAAAGTATACAAGACATTGAGGTAAGAATCTATGT < 41bp 1 0.0594281935377365 1 0.0188096165657043 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BTRC ENSG00000166167 CDS Human protein_coding chr10:103291084 chr10:103291074 nonsynonymous SNV 0.999 4 11 hm5C_associated_SNPs_19696 0 0 1 0 2 BTRC chr10:103291090 5'GT 103291090 Upstream 17bp
chr11 67815433 67815433 1 + C T COAD 67815417 + 67815397 67815437 41 CACCGGTGTCTTCCTGGGACCCTACCCCTTTGGCATCGATC CACCGGTGTCTTCCTGGGACCCTACCCCTTTGGCATTGATC < 41bp 1 0.00777699490768512 1 0.0396702885627747 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815417 chr11:67815433 synonymous SNV . 0 37 hm5C_associated_SNPs_19697 0 0 0 0 2 TCIRG1 chr11:67815349 3'AG 67815349 Downstream 85bp
chr11 67815433 67815433 1 + C T COAD 67815417 + 67815397 67815437 41 CACCGGTGTCTTCCTGGGACCCTACCCCTTTGGCATCGATC CACCGGTGTCTTCCTGGGACCCTACCCCTTTGGCATTGATC < 41bp 1 0.00777699490768512 1 0.0396702885627747 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815417 chr11:67815433 synonymous SNV . 0 37 hm5C_associated_SNPs_19697 0 0 0 0 2 TCIRG1 chr11:67815439 5'GT 67815439 Upstream 7bp
chr11 67815433 67815433 1 + C T COAD 67815437 + 67815417 67815457 41 CCTACCCCTTTGGCATCGATCCTGTGAGTCCTGGGATGGAG CCTACCCCTTTGGCATTGATCCTGTGAGTCCTGGGATGGAG < 41bp 1 0.213628749428339 1 0.144443154335022 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815437 chr11:67815433 synonymous SNV . 0 17 hm5C_associated_SNPs_19698 0 0 0 0 2 TCIRG1 chr11:67815349 3'AG 67815349 Downstream 85bp
chr11 67815433 67815433 1 + C T COAD 67815437 + 67815417 67815457 41 CCTACCCCTTTGGCATCGATCCTGTGAGTCCTGGGATGGAG CCTACCCCTTTGGCATTGATCCTGTGAGTCCTGGGATGGAG < 41bp 1 0.213628749428339 1 0.144443154335022 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815437 chr11:67815433 synonymous SNV . 0 17 hm5C_associated_SNPs_19698 0 0 0 0 2 TCIRG1 chr11:67815439 5'GT 67815439 Upstream 7bp
chr21 37781679 37781679 1 + G A COAD 37781678 + 37781658 37781698 41 AATTAATCCATTAGGCCCATCGCTCATCTTCCATGTCCTGG AATTAATCCATTAGGCCCATCACTCATCTTCCATGTCCTGG < 41bp 1 0.0919376987370309 1 0.0479721128940582 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37781678 chr21:37781679 nonsynonymous SNV 0.596 1 22 hm5C_associated_SNPs_19699 0 0 0 0 2 CHAF1B chr21:37781672 3'AG 37781672 Downstream 8bp
chr21 37781679 37781679 1 + G A COAD 37781678 + 37781658 37781698 41 AATTAATCCATTAGGCCCATCGCTCATCTTCCATGTCCTGG AATTAATCCATTAGGCCCATCACTCATCTTCCATGTCCTGG < 41bp 1 0.0919376987370309 1 0.0479721128940582 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37781678 chr21:37781679 nonsynonymous SNV 0.596 1 22 hm5C_associated_SNPs_19699 0 0 0 0 2 CHAF1B chr21:37781763 5'GT 37781763 Upstream 85bp
chr20 2635158 2635158 1 + G A COAD 2635143 + 2635123 2635163 41 TACTCTTGGGAGTTGGGGATCCCAAGATTGGTGCCGCAATA TACTCTTGGGAGTTGGGGATCCCAAGATTGGTGCCACAATA < 41bp 1 0.55487594392449 1 0.196308076381683 experiment 0.89024811215102 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635143 chr20:2635158 nonsynonymous SNV 0.976 1 36 hm5C_associated_SNPs_19700 0 0 1 0 2 NOP56 chr20:2635060 3'AG 2635060 Downstream 99bp
chr20 2635158 2635158 1 + G A COAD 2635143 + 2635123 2635163 41 TACTCTTGGGAGTTGGGGATCCCAAGATTGGTGCCGCAATA TACTCTTGGGAGTTGGGGATCCCAAGATTGGTGCCACAATA < 41bp 1 0.55487594392449 1 0.196308076381683 experiment 0.89024811215102 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635143 chr20:2635158 nonsynonymous SNV 0.976 1 36 hm5C_associated_SNPs_19700 0 0 1 0 2 NOP56 chr20:2635221 5'GT 2635221 Upstream 64bp
chr20 2635158 2635158 1 + G A COAD 2635157 + 2635137 2635177 41 GGGGATCCCAAGATTGGTGCCGCAATACAGGAGGAGTTAGG GGGGATCCCAAGATTGGTGCCACAATACAGGAGGAGTTAGG < 41bp 1 0.524511698274936 1 0.20717790722847 experiment 0.950976603450127 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635157 chr20:2635158 nonsynonymous SNV 0.976 1 22 hm5C_associated_SNPs_19701 0 0 1 0 2 NOP56 chr20:2635060 3'AG 2635060 Downstream 99bp
chr20 2635158 2635158 1 + G A COAD 2635157 + 2635137 2635177 41 GGGGATCCCAAGATTGGTGCCGCAATACAGGAGGAGTTAGG GGGGATCCCAAGATTGGTGCCACAATACAGGAGGAGTTAGG < 41bp 1 0.524511698274936 1 0.20717790722847 experiment 0.950976603450127 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635157 chr20:2635158 nonsynonymous SNV 0.976 1 22 hm5C_associated_SNPs_19701 0 0 1 0 2 NOP56 chr20:2635221 5'GT 2635221 Upstream 64bp
chr2 162091890 162091890 1 + C T COAD 162091882 + 162091862 162091902 41 AAGCCCTTTCCTAATCAAGACAGTGACTCGGTGGTACTAAG AAGCCCTTTCCTAATCAAGACAGTGACTTGGTGGTACTAAG < 41bp 1 0.330987642685577 1 0.138175904750824 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TANK ENSG00000136560 CDS Human protein_coding chr2:162091882 chr2:162091890 nonsynonymous SNV 0.917 0 29 hm5C_associated_SNPs_19702 0 0 1 0 1 TANK chr2:162091853 3'AG 162091853 Downstream 38bp
chr3 184021822 184021822 1 + C A COAD 184021833 + 184021813 184021853 41 GACTATGTTCTCCACAACAGCAACACCATGAGACTTGGTTC GACTATGTTATCCACAACAGCAACACCATGAGACTTGGTTC < 41bp 1 0.537175838805881 1 0.368222445249557 experiment 0.925648322388238 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184021833 chr3:184021822 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_19703 0 0 1 0 2 PSMD2 chr3:184021735 3'AG 184021735 Downstream 88bp
chr3 184021822 184021822 1 + C A COAD 184021833 + 184021813 184021853 41 GACTATGTTCTCCACAACAGCAACACCATGAGACTTGGTTC GACTATGTTATCCACAACAGCAACACCATGAGACTTGGTTC < 41bp 1 0.537175838805881 1 0.368222445249557 experiment 0.925648322388238 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184021833 chr3:184021822 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_19703 0 0 1 0 2 PSMD2 chr3:184021862 5'GT 184021862 Upstream 41bp
chr8 126034024 126034024 1 + G A COAD 126034007 + 126033987 126034027 41 TATTACAGATTGTCTCCTAACCCTCTAGTTTTAATTGGACA TATTACAGATTGTCTCCTAACCCTCTAGTTTTAATTGAACA < 41bp 1 0.0373449882646356 1 0.0474207699298859 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SQLE ENSG00000104549 CDS Human protein_coding chr8:126034007 chr8:126034024 nonsynonymous SNV 0.792 3 38 hm5C_associated_SNPs_19704 0 0 1 0 1 SQLE chr8:126033995 3'AG 126033995 Downstream 30bp
chr8 94717161 94717161 1 + G T COAD 94717170 + 94717150 94717190 41 CAACACTCACAGCAAGGAATCGAGAAGCTAAGCAATTAACT CAACACTCACATCAAGGAATCGAGAAGCTAAGCAATTAACT < 41bp 1 0.758756255659809 1 0.804935932159424 experiment 0.482487488680382 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM92A ENSG00000188343 CDS Human protein_coding chr8:94717170 chr8:94717161 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_19707 0 0 0 0 1 FAM92A chr8:94717137 3'AG 94717137 Downstream 25bp
chr1 23408772 23408772 1 + C A COAD 23408765 + 23408745 23408785 41 TGATCCCTGGGCTCGGGGCTCTTATTCCTATGTTGCTGCAG TGATCCCTGGGCTCGGGGCTCTTATTCATATGTTGCTGCAG < 41bp 1 0.127601448281764 1 0.14509305357933 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1A ENSG00000004487 CDS Human protein_coding chr1:23408765 chr1:23408772 synonymous SNV . 0 28 hm5C_associated_SNPs_19708 0 0 1 0 2 KDM1A chr1:23408713 3'AG 23408713 Downstream 60bp
chr1 23408772 23408772 1 + C A COAD 23408765 + 23408745 23408785 41 TGATCCCTGGGCTCGGGGCTCTTATTCCTATGTTGCTGCAG TGATCCCTGGGCTCGGGGCTCTTATTCATATGTTGCTGCAG < 41bp 1 0.127601448281764 1 0.14509305357933 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1A ENSG00000004487 CDS Human protein_coding chr1:23408765 chr1:23408772 synonymous SNV . 0 28 hm5C_associated_SNPs_19708 0 0 1 0 2 KDM1A chr1:23408859 5'GT 23408859 Upstream 88bp
chr3 52237955 52237955 1 + G T COAD 52237938 + 52237918 52237958 41 TGAAAACCGATGGAGGGGATCCCAGTGGACTGCTGAAGAAC TGAAAACCGATGGAGGGGATCCCAGTGGACTGCTGAATAAC < 41bp 1 0.360881847317076 1 0.0937609076499939 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52237938 chr3:52237955 nonsynonymous SNV 0.994 1 38 hm5C_associated_SNPs_19710 0 0 1 0 2 ALAS1 chr3:52237879 3'AG 52237879 Downstream 77bp
chr3 52237955 52237955 1 + G T COAD 52237938 + 52237918 52237958 41 TGAAAACCGATGGAGGGGATCCCAGTGGACTGCTGAAGAAC TGAAAACCGATGGAGGGGATCCCAGTGGACTGCTGAATAAC < 41bp 1 0.360881847317076 1 0.0937609076499939 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52237938 chr3:52237955 nonsynonymous SNV 0.994 1 38 hm5C_associated_SNPs_19710 0 0 1 0 2 ALAS1 chr3:52238028 5'GT 52238028 Upstream 74bp
chr2 27258560 27258560 1 + C A COAD 27258544 + 27258524 27258564 41 GCAGCAGGGTCTCTGGAGCTCTTTTTTGACCACTGTCTGTT GCAGCAGGGTCTCTGGAGCTCTTTTTTGACCACTGTATGTT < 41bp 1 0.12804429236674 1 0.0468843579292297 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27258544 chr2:27258560 nonsynonymous SNV 0.994 0 37 hm5C_associated_SNPs_19712 0 0 1 0 2 TMEM214 chr2:27258462 3'AG 27258462 Downstream 99bp
chr2 27258560 27258560 1 + C A COAD 27258544 + 27258524 27258564 41 GCAGCAGGGTCTCTGGAGCTCTTTTTTGACCACTGTCTGTT GCAGCAGGGTCTCTGGAGCTCTTTTTTGACCACTGTATGTT < 41bp 1 0.12804429236674 1 0.0468843579292297 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27258544 chr2:27258560 nonsynonymous SNV 0.994 0 37 hm5C_associated_SNPs_19712 0 0 1 0 2 TMEM214 chr2:27258596 5'GT 27258596 Upstream 37bp
chrX 48399814 48399814 1 + G A COAD 48399810 + 48399790 48399830 41 GTGTTGCAGCACATCCTCATCCGAGCCTTTGATTTGAGTGG GTGTTGCAGCACATCCTCATCCGAACCTTTGATTTGAGTGG < 41bp 1 0.496495783483329 1 0.405364185571671 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399810 chrX:48399814 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_19713 0 0 0 0 3 TBC1D25 chrX:48399721 3'AG 48399721 Downstream 94bp
chrX 48399814 48399814 1 + G A COAD 48399810 + 48399790 48399830 41 GTGTTGCAGCACATCCTCATCCGAGCCTTTGATTTGAGTGG GTGTTGCAGCACATCCTCATCCGAACCTTTGATTTGAGTGG < 41bp 1 0.496495783483329 1 0.405364185571671 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399810 chrX:48399814 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_19713 0 0 0 0 3 TBC1D25 chrX:48399830 5'GT 48399830 Upstream 17bp
chrX 48399814 48399814 1 + G A COAD 48399810 + 48399790 48399830 41 GTGTTGCAGCACATCCTCATCCGAGCCTTTGATTTGAGTGG GTGTTGCAGCACATCCTCATCCGAACCTTTGATTTGAGTGG < 41bp 1 0.496495783483329 1 0.405364185571671 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399810 chrX:48399814 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_19713 0 0 0 0 3 TBC1D25 chrX:48399901 5'GT 48399901 Upstream 88bp
chr5 71499406 71499406 1 + G T COAD 71499412 + 71499392 71499432 41 CCAGGAACTACCAAGACGACCAAGTCATCTGCTGTGCCCCC CCAGGAACTACCAATACGACCAAGTCATCTGCTGTGCCCCC < 41bp 1 0.209231266140505 1 0.839129209518433 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71499412 chr5:71499406 nonsynonymous SNV 0.705 4 15 hm5C_associated_SNPs_19714 0 0 1 0 1 MAP1B chr5:71499390 3'AG 71499390 Downstream 17bp
chr8 22862116 22862116 1 + G A COAD 22862102 + 22862082 22862122 41 GCTGGCCACGCATGTGCCCACAGTATGGGCCATCGACCAAT GCTGGCCACGCATGTGCCCACAGTATGGGCCATCAACCAAT < 41bp 1 0.653243154630163 1 0.101958334445953 experiment 0.693513690739673 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22862102 chr8:22862116 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_19715 0 0 0 0 1 RHOBTB2 chr8:22862139 5'GT 22862139 Upstream 24bp
chr1 154947236 154947236 1 + A C COAD 154947230 + 154947210 154947250 41 AACCGAGCGATCATGTCGCACAAACAAATTTACTATTCGGA AACCGAGCGATCATGTCGCACAAACACATTTACTATTCGGA < 41bp 1 0.0739223711454852 1 0.0730399787425995 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CKS1B ENSG00000173207 CDS Human protein_coding chr1:154947230 chr1:154947236 nonsynonymous SNV 0.996 2 27 hm5C_associated_SNPs_19716 0 0 1 0 1 CKS1B chr1:154947280 5'GT 154947280 Upstream 45bp
chr9 79996924 79996924 1 + G A COAD 79996920 + 79996900 79996940 41 AGACTTCTGAAGTGGAGAGTCTGCGACCTCCTCGGTTCTTC AGACTTCTGAAGTGGAGAGTCTGCAACCTCCTCGGTTCTTC < 41bp 1 0.558466004781052 1 0.654876947402954 experiment 0.883067990437896 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VPS13A ENSG00000197969 CDS Human protein_coding chr9:79996920 chr9:79996924 nonsynonymous SNV 0.985 4 25 hm5C_associated_SNPs_19728 0 0 1 0 2 VPS13A chr9:79996892 3'AG 79996892 Downstream 33bp
chr9 79996924 79996924 1 + G A COAD 79996920 + 79996900 79996940 41 AGACTTCTGAAGTGGAGAGTCTGCGACCTCCTCGGTTCTTC AGACTTCTGAAGTGGAGAGTCTGCAACCTCCTCGGTTCTTC < 41bp 1 0.558466004781052 1 0.654876947402954 experiment 0.883067990437896 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VPS13A ENSG00000197969 CDS Human protein_coding chr9:79996920 chr9:79996924 nonsynonymous SNV 0.985 4 25 hm5C_associated_SNPs_19728 0 0 1 0 2 VPS13A chr9:79997003 5'GT 79997003 Upstream 80bp
chr10 93756295 93756295 1 + T C COAD 93756310 + 93756290 93756330 41 CAGTGTCAAACAAGAGGGTGCAATTGAAGCACTTGCCTGTA CAGTGCCAAACAAGAGGGTGCAATTGAAGCACTTGCCTGTA < 41bp 1 0.110095085736136 1 0.0485715568065643 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93756310 chr10:93756295 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_19730 0 0 1 0 1 BTAF1 chr10:93756327 5'GT 93756327 Upstream 33bp
chr2 86360314 86360314 1 + G A COAD 86360303 + 86360283 86360323 41 TTTTTGCCTTCATCACAGTTCCAAGTTCTTCGATTTGATTT TTTTTGCCTTCATCACAGTTCCAAGTTCTTCAATTTGATTT < 41bp 1 0.0924328539573511 1 0.0436755418777466 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86360303 chr2:86360314 nonsynonymous SNV 0.562 0 32 hm5C_associated_SNPs_19731 0 0 1 0 2 PTCD3 chr2:86360301 3'AG 86360301 Downstream 14bp
chr2 86360314 86360314 1 + G A COAD 86360303 + 86360283 86360323 41 TTTTTGCCTTCATCACAGTTCCAAGTTCTTCGATTTGATTT TTTTTGCCTTCATCACAGTTCCAAGTTCTTCAATTTGATTT < 41bp 1 0.0924328539573511 1 0.0436755418777466 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86360303 chr2:86360314 nonsynonymous SNV 0.562 0 32 hm5C_associated_SNPs_19731 0 0 1 0 2 PTCD3 chr2:86360379 5'GT 86360379 Upstream 66bp
chr8 104452462 104452462 1 + G A COAD 104452461 + 104452441 104452481 41 GATCTGATGAAATGAACATTCGCCTGTGGAAAGCTAATGCT GATCTGATGAAATGAACATTCACCTGTGGAAAGCTAATGCT < 41bp 1 0.715294148581891 1 0.0759576261043549 experiment 0.569411702836218 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104452461 chr8:104452462 nonsynonymous SNV 0.992 3 22 hm5C_associated_SNPs_19733 0 0 1 0 1 DCAF13 chr8:104452364 3'AG 104452364 Downstream 99bp
chr6 151258063 151258063 1 + G A COAD 151258052 + 151258032 151258072 41 CCTGCTTGAGGCAGCCTTCCCAAGGACCGACGTTTGGAGTG CCTGCTTGAGGCAGCCTTCCCAAGGACCGACATTTGGAGTG < 41bp 1 0.772355849791967 1 0.962890446186066 experiment 0.455288300416066 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MTHFD1L ENSG00000120254 CDS Human protein_coding chr6:151258052 chr6:151258063 synonymous SNV . 0 32 hm5C_associated_SNPs_19734 0 0 1 0 1 MTHFD1L chr6:151258076 5'GT 151258076 Upstream 14bp
chr12 51117091 51117091 1 + C A COAD 51117087 + 51117067 51117107 41 CCTCACGGCCACGCTGCCCACTGTCCGAATGATTGTTGATG CCTCACGGCCACGCTGCCCACTGTACGAATGATTGTTGATG < 41bp 1 0.406762893099224 1 0.160151481628418 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51117087 chr12:51117091 synonymous SNV . 0 25 hm5C_associated_SNPs_19737 0 0 1 0 1 DIP2B chr12:51117106 5'GT 51117106 Upstream 16bp
chr16 29810042 29810042 1 + T C COAD 29810025 + 29810005 29810045 41 TGCCGAGGGCCGGCCATGGGCCCTTTCTGTCACCATGTCTT TGCCGAGGGCCGGCCATGGGCCCTTTCTGTCACCATGCCTT < 41bp 1 0.147574446473851 1 0.0231205523014069 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29810025 chr16:29810042 nonsynonymous SNV 0.999 3 38 hm5C_associated_SNPs_19738 0 0 1 0 1 KIF22 chr16:29810068 5'GT 29810068 Upstream 27bp
chr4 103522084 103522084 1 + C T COAD 103522101 + 103522081 103522121 41 ATTCTCAACTTGTGAGGGATCTACTAGAAGTCACATCTGGT ATTTTCAACTTGTGAGGGATCTACTAGAAGTCACATCTGGT < 41bp 1 0.154170978016259 1 0.37762451171875 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103522101 chr4:103522084 nonsynonymous SNV 0.966 0 4 hm5C_associated_SNPs_19740 0 0 1 0 1 NFKB1 chr4:103522166 5'GT 103522166 Upstream 83bp
chr16 16230342 16230342 1 + T C COAD 16230338 + 16230318 16230358 41 CTCTTCTCTCTGAACAGGACCCTGTTTTGTTTTCGGGTTCC CTCTTCTCTCTGAACAGGACCCTGCTTTGTTTTCGGGTTCC < 41bp 1 0.0276913063363746 1 0.134663552045822 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16230338 chr16:16230342 nonsynonymous SNV 0.608 3 25 hm5C_associated_SNPs_19743 0 0 0 0 1 ABCC1 chr16:16230335 3'AG 16230335 Downstream 8bp
chr12 101711340 101711340 1 + C T COAD 101711330 + 101711310 101711350 41 AAAAGGCAAAGGGATGGTGGCAGAGGAAATCGAAGAGGAAC AAAAGGCAAAGGGATGGTGGCAGAGGAAATTGAAGAGGAAC < 41bp 1 0.330214534907348 1 0.664908170700073 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711330 chr12:101711340 synonymous SNV . 0 31 hm5C_associated_SNPs_19744 0 0 1 0 1 UTP20 chr12:101711256 3'AG 101711256 Downstream 85bp
chr12 101711340 101711340 1 + C T COAD 101711351 + 101711331 101711371 41 AGAGGAAATCGAAGAGGAACCTGCCGCAGGAGATGATGAAG AGAGGAAATTGAAGAGGAACCTGCCGCAGGAGATGATGAAG < 41bp 1 0.359783965859502 1 0.693605959415436 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711351 chr12:101711340 synonymous SNV . 0 10 hm5C_associated_SNPs_19745 0 0 1 0 1 UTP20 chr12:101711256 3'AG 101711256 Downstream 85bp
chr12 101711340 101711340 1 + C T COAD 101711354 + 101711334 101711374 41 GGAAATCGAAGAGGAACCTGCCGCAGGAGATGATGAAGAGT GGAAATTGAAGAGGAACCTGCCGCAGGAGATGATGAAGAGT < 41bp 1 0.274217829181684 1 0.501982629299164 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711354 chr12:101711340 synonymous SNV . 0 7 hm5C_associated_SNPs_19746 0 0 1 0 1 UTP20 chr12:101711256 3'AG 101711256 Downstream 85bp
chr12 101711340 101711340 1 + C T COAD 101711355 + 101711335 101711375 41 GAAATCGAAGAGGAACCTGCCGCAGGAGATGATGAAGAGTT GAAATTGAAGAGGAACCTGCCGCAGGAGATGATGAAGAGTT < 41bp 1 0.426185784574688 1 0.592441201210022 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711355 chr12:101711340 synonymous SNV . 0 6 hm5C_associated_SNPs_19747 0 0 1 0 1 UTP20 chr12:101711256 3'AG 101711256 Downstream 85bp
chr12 101711340 101711340 1 + C T COAD 101711357 + 101711337 101711377 41 AATCGAAGAGGAACCTGCCGCAGGAGATGATGAAGAGTTGG AATTGAAGAGGAACCTGCCGCAGGAGATGATGAAGAGTTGG < 41bp 1 0.74983971419212 1 0.836866974830627 experiment 0.500320571615759 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711357 chr12:101711340 synonymous SNV . 0 4 hm5C_associated_SNPs_19748 0 0 1 0 1 UTP20 chr12:101711256 3'AG 101711256 Downstream 85bp
chr1 198233281 198233281 1 + A C COAD 198233263 + 198233243 198233283 41 TTATTTTCTCAGCAACTCAACCATCCAAATGTAATAAAATA TTATTTTCTCAGCAACTCAACCATCCAAATGTAATAAACTA < 41bp 1 0.0142907209415921 1 0.137663185596466 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233263 chr1:198233281 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_19749 0 0 1 0 2 NEK7 chr1:198233255 3'AG 198233255 Downstream 27bp
chr1 198233281 198233281 1 + A C COAD 198233263 + 198233243 198233283 41 TTATTTTCTCAGCAACTCAACCATCCAAATGTAATAAAATA TTATTTTCTCAGCAACTCAACCATCCAAATGTAATAAACTA < 41bp 1 0.0142907209415921 1 0.137663185596466 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233263 chr1:198233281 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_19749 0 0 1 0 2 NEK7 chr1:198233365 5'GT 198233365 Upstream 85bp
chr1 198233281 198233281 1 + A C COAD 198233296 + 198233276 198233316 41 ATAAAATATTATGCATCATTCATTGAAGATAATGAACTAAA ATAAACTATTATGCATCATTCATTGAAGATAATGAACTAAA < 41bp 1 0.109682073976884 1 0.302419394254684 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233296 chr1:198233281 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_19750 0 0 1 0 2 NEK7 chr1:198233255 3'AG 198233255 Downstream 27bp
chr1 198233281 198233281 1 + A C COAD 198233296 + 198233276 198233316 41 ATAAAATATTATGCATCATTCATTGAAGATAATGAACTAAA ATAAACTATTATGCATCATTCATTGAAGATAATGAACTAAA < 41bp 1 0.109682073976884 1 0.302419394254684 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233296 chr1:198233281 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_19750 0 0 1 0 2 NEK7 chr1:198233365 5'GT 198233365 Upstream 85bp
chr22 38352844 38352844 1 + G A COAD 38352831 + 38352811 38352851 41 GAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT GAGGATGAAGGGCTAGATGACTTGGAGAATGCCAAAGAGGT < 41bp 1 0.477569057320976 1 0.194418340921402 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352831 chr22:38352844 nonsynonymous SNV 0.925 1 34 hm5C_associated_SNPs_19751 0 0 1 0 3 POLR2F chr22:38352780 3'AG 38352780 Downstream 65bp
chr22 38352844 38352844 1 + G A COAD 38352831 + 38352811 38352851 41 GAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT GAGGATGAAGGGCTAGATGACTTGGAGAATGCCAAAGAGGT < 41bp 1 0.477569057320976 1 0.194418340921402 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352831 chr22:38352844 nonsynonymous SNV 0.925 1 34 hm5C_associated_SNPs_19751 0 0 1 0 3 POLR2F chr22:38352849 5'GT 38352849 Upstream 6bp
chr22 38352844 38352844 1 + G A COAD 38352831 + 38352811 38352851 41 GAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT GAGGATGAAGGGCTAGATGACTTGGAGAATGCCAAAGAGGT < 41bp 1 0.477569057320976 1 0.194418340921402 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352831 chr22:38352844 nonsynonymous SNV 0.925 1 34 hm5C_associated_SNPs_19751 0 0 1 0 3 POLR2F chr22:38352908 5'GT 38352908 Upstream 65bp
chr22 38352844 38352844 1 + G A COAD 38352843 + 38352823 38352863 41 CTAGATGACTTGGAGAATGCCGAAGAGGTCAGTATTCAGCC CTAGATGACTTGGAGAATGCCAAAGAGGTCAGTATTCAGCC < 41bp 1 0.587676181847692 1 0.520115494728088 experiment 0.824647636304617 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352843 chr22:38352844 nonsynonymous SNV 0.925 1 22 hm5C_associated_SNPs_19752 0 0 1 0 3 POLR2F chr22:38352780 3'AG 38352780 Downstream 65bp
chr22 38352844 38352844 1 + G A COAD 38352843 + 38352823 38352863 41 CTAGATGACTTGGAGAATGCCGAAGAGGTCAGTATTCAGCC CTAGATGACTTGGAGAATGCCAAAGAGGTCAGTATTCAGCC < 41bp 1 0.587676181847692 1 0.520115494728088 experiment 0.824647636304617 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352843 chr22:38352844 nonsynonymous SNV 0.925 1 22 hm5C_associated_SNPs_19752 0 0 1 0 3 POLR2F chr22:38352849 5'GT 38352849 Upstream 6bp
chr22 38352844 38352844 1 + G A COAD 38352843 + 38352823 38352863 41 CTAGATGACTTGGAGAATGCCGAAGAGGTCAGTATTCAGCC CTAGATGACTTGGAGAATGCCAAAGAGGTCAGTATTCAGCC < 41bp 1 0.587676181847692 1 0.520115494728088 experiment 0.824647636304617 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352843 chr22:38352844 nonsynonymous SNV 0.925 1 22 hm5C_associated_SNPs_19752 0 0 1 0 3 POLR2F chr22:38352908 5'GT 38352908 Upstream 65bp
chr8 107752665 107752665 1 + G A COAD 107752684 + 107752664 107752704 41 CGAACAATGACAGGTTTAGACACCCCAGTGCTGATGGTGAT CAAACAATGACAGGTTTAGACACCCCAGTGCTGATGGTGAT < 41bp 1 0.333522924229847 1 0.182835131883621 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107752684 chr8:107752665 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_19754 0 0 1 1 2 OXR1 chr8:107752571 3'AG 107752571 Downstream 95bp
chr8 107752665 107752665 1 + G A COAD 107752684 + 107752664 107752704 41 CGAACAATGACAGGTTTAGACACCCCAGTGCTGATGGTGAT CAAACAATGACAGGTTTAGACACCCCAGTGCTGATGGTGAT < 41bp 1 0.333522924229847 1 0.182835131883621 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107752684 chr8:107752665 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_19754 0 0 1 1 2 OXR1 chr8:107752723 5'GT 107752723 Upstream 59bp
chr17 47119664 47119664 1 + G T COAD 47119678 + 47119658 47119698 41 CATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGA CATCGATAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGA < 41bp 1 0.109777329204083 1 0.221370816230774 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119678 chr17:47119664 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_19755 0 0 1 0 1 IGF2BP1 chr17:47119604 3'AG 47119604 Downstream 61bp
chr17 47119664 47119664 1 + G T COAD 47119679 + 47119659 47119699 41 ATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGAA ATCGATAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGAA < 41bp 1 0.332899117684689 1 0.212129563093185 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119679 chr17:47119664 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_19756 0 0 1 0 1 IGF2BP1 chr17:47119604 3'AG 47119604 Downstream 61bp
chr7 150704192 150704192 1 + T G COAD 150704202 + 150704182 150704222 41 CACCCCAGGTTCTGTGTGTTCGGGCTCGGCTCCCGGGCATA CACCCCAGGTGCTGTGTGTTCGGGCTCGGCTCCCGGGCATA < 41bp 1 0.793126930081047 1 0.911242544651031 experiment 0.413746139837907 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control NOS3 ENSG00000164867 CDS Human protein_coding chr7:150704202 chr7:150704192 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_19757 0 0 0 0 1 NOS3 chr7:150704190 3'AG 150704190 Downstream 3bp
chr3 62189577 62189577 1 + G A COAD 62189585 + 62189565 62189605 41 AGCCTATGTCCCGCGGGGACCGATTTTCTGAAGACAGCAGA AGCCTATGTCCCACGGGGACCGATTTTCTGAAGACAGCAGA < 41bp 1 0.083514622700546 1 0.0912807881832123 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:62189585 chr3:62189577 nonsynonymous SNV 0.872 1 13 hm5C_associated_SNPs_19758 0 0 0 0 1 PTPRG chr3:62189624 5'GT 62189624 Upstream 48bp
chr7 4002347 4002347 1 + G A COAD 4002345 + 4002325 4002365 41 CCATCTCCATCAGCAGGCTCCAGAATCCTCGATACAAAGTG CCATCTCCATCAGCAGGCTCCAAAATCCTCGATACAAAGTG < 41bp 1 0.141550849009048 1 0.234192967414856 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDK1 ENSG00000146555 CDS Human protein_coding chr7:4002345 chr7:4002347 synonymous SNV . 0 23 hm5C_associated_SNPs_19760 0 0 1 0 1 SDK1 chr7:4002289 3'AG 4002289 Downstream 59bp
chr2 135883788 135883788 1 + G A COAD 135883796 + 135883776 135883816 41 CCTCATCTGACCGAAGGGATCATTGTGGATAATGATGTTTA CCTCATCTGACCAAAGGGATCATTGTGGATAATGATGTTTA < 41bp 1 0.116585997571818 1 0.0839249193668365 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RAB3GAP1 ENSG00000115839 CDS Human protein_coding chr2:135883796 chr2:135883788 nonsynonymous SNV 0.915 4 13 hm5C_associated_SNPs_19761 0 0 1 0 2 RAB3GAP1 chr2:135883751 3'AG 135883751 Downstream 38bp
chr2 135883788 135883788 1 + G A COAD 135883796 + 135883776 135883816 41 CCTCATCTGACCGAAGGGATCATTGTGGATAATGATGTTTA CCTCATCTGACCAAAGGGATCATTGTGGATAATGATGTTTA < 41bp 1 0.116585997571818 1 0.0839249193668365 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RAB3GAP1 ENSG00000115839 CDS Human protein_coding chr2:135883796 chr2:135883788 nonsynonymous SNV 0.915 4 13 hm5C_associated_SNPs_19761 0 0 1 0 2 RAB3GAP1 chr2:135883819 5'GT 135883819 Upstream 32bp
chr12 13232900 13232900 1 + G A COAD 13232896 + 13232876 13232916 41 CCAAAATTGGCCGTGGGGAGCTGCGAAGATTTCTCTCTAGG CCAAAATTGGCCGTGGGGAGCTGCAAAGATTTCTCTCTAGG < 41bp 1 0.66996269731816 1 0.285153120756149 experiment 0.66007460536368 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234B ENSG00000084444 CDS Human protein_coding chr12:13232896 chr12:13232900 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_19762 0 0 1 1 1 FAM234B chr12:13232943 5'GT 13232943 Upstream 44bp
chr19 42855623 42855623 1 + C T COAD 42855632 + 42855612 42855652 41 TCTAGCCAGTGCGCCTGGTGCCAGTCCACCCACACCTGCTT TCTAGCCAGTGTGCCTGGTGCCAGTCCACCCACACCTGCTT < 41bp 1 0.0908721421503405 1 0.0859840214252472 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42855632 chr19:42855623 synonymous SNV . 0 12 hm5C_associated_SNPs_19763 0 0 1 0 2 MEGF8 chr19:42855581 3'AG 42855581 Downstream 43bp
chr19 42855623 42855623 1 + C T COAD 42855632 + 42855612 42855652 41 TCTAGCCAGTGCGCCTGGTGCCAGTCCACCCACACCTGCTT TCTAGCCAGTGTGCCTGGTGCCAGTCCACCCACACCTGCTT < 41bp 1 0.0908721421503405 1 0.0859840214252472 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42855632 chr19:42855623 synonymous SNV . 0 12 hm5C_associated_SNPs_19763 0 0 1 0 2 MEGF8 chr19:42855712 5'GT 42855712 Upstream 90bp
chr2 224824263 224824263 1 + G A COAD 224824275 + 224824255 224824295 41 GAGAAGCCGAACTGGGATTACCATGCAGAAATACAAGCTTT GAGAAGCCAAACTGGGATTACCATGCAGAAATACAAGCTTT < 41bp 1 0.127348156968072 1 0.242820084095001 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224824275 chr2:224824263 synonymous SNV . 0 9 hm5C_associated_SNPs_19764 0 0 1 0 1 MRPL44 chr2:224824251 3'AG 224824251 Downstream 13bp
chr6 72003252 72003252 1 + G A COAD 72003257 + 72003237 72003277 41 ACTTCAAAGATATCCGATATCAAAATGACTTGAGCAATCTT ACTTCAAAGATATCCAATATCAAAATGACTTGAGCAATCTT < 41bp 1 0.652288131873508 1 0.377761662006378 experiment 0.695423736252983 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OGFRL1 ENSG00000119900 CDS Human protein_coding chr6:72003257 chr6:72003252 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_19765 0 0 1 0 2 OGFRL1 chr6:72003236 3'AG 72003236 Downstream 17bp
chr6 72003252 72003252 1 + G A COAD 72003257 + 72003237 72003277 41 ACTTCAAAGATATCCGATATCAAAATGACTTGAGCAATCTT ACTTCAAAGATATCCAATATCAAAATGACTTGAGCAATCTT < 41bp 1 0.652288131873508 1 0.377761662006378 experiment 0.695423736252983 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OGFRL1 ENSG00000119900 CDS Human protein_coding chr6:72003257 chr6:72003252 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_19765 0 0 1 0 2 OGFRL1 chr6:72003314 5'GT 72003314 Upstream 63bp
chr7 149422526 149422526 1 + G A COAD 149422538 + 149422518 149422558 41 CCAGCCAGGAGACTCTAGGTCTCAGAAGCCTGAACTGCAAC CCAGCCAGAAGACTCTAGGTCTCAGAAGCCTGAACTGCAAC < 41bp 1 0.294263821457176 1 0.428112715482712 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149422538 chr7:149422526 nonsynonymous SNV 0.038 4 9 hm5C_associated_SNPs_19766 0 0 0 0 1 KRBA1 chr7:149422579 5'GT 149422579 Upstream 54bp
chr1 154304480 154304480 1 + A C COAD 154304485 + 154304465 154304505 41 TGGGCTGTGTTACATAGAGACAGCAGAACTTGATGGGTAAG TGGGCTGTGTTACATCGAGACAGCAGAACTTGATGGGTAAG < 41bp 1 0.628082232886653 1 0.382967114448547 experiment 0.743835534226694 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154304485 chr1:154304480 synonymous SNV . 0 16 hm5C_associated_SNPs_19767 0 0 1 0 2 ATP8B2 chr1:154304430 3'AG 154304430 Downstream 51bp
chr1 154304480 154304480 1 + A C COAD 154304485 + 154304465 154304505 41 TGGGCTGTGTTACATAGAGACAGCAGAACTTGATGGGTAAG TGGGCTGTGTTACATCGAGACAGCAGAACTTGATGGGTAAG < 41bp 1 0.628082232886653 1 0.382967114448547 experiment 0.743835534226694 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154304485 chr1:154304480 synonymous SNV . 0 16 hm5C_associated_SNPs_19767 0 0 1 0 2 ATP8B2 chr1:154304500 5'GT 154304500 Upstream 21bp
chr9 131455942 131455942 1 + C T COAD 131455929 + 131455909 131455949 41 TCATTTAGGATTTGACGAAACGTTCGAGTCAAACGCAGAAT TCATTTAGGATTTGACGAAACGTTCGAGTCAAATGCAGAAT < 41bp 1 0.111549179623361 1 0.0575315058231354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SET ENSG00000119335 CDS Human protein_coding chr9:131455929 chr9:131455942 nonsynonymous SNV 0.998 1 34 hm5C_associated_SNPs_19768 0 0 1 1 1 SET chr9:131455917 3'AG 131455917 Downstream 26bp
chr8 124811872 124811872 1 + G A COAD 124811871 + 124811851 124811891 41 TGTCCAAAGGTACAAGACTTCGAAAACTGCCAGATATATTT TGTCCAAAGGTACAAGACTTCAAAAACTGCCAGATATATTT < 41bp 1 0.688490233442589 1 0.475653320550919 experiment 0.623019533114823 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124811871 chr8:124811872 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_19769 0 0 1 0 1 FAM91A1 chr8:124811894 5'GT 124811894 Upstream 23bp
chr8 145139718 145139718 1 + C T COAD 145139712 + 145139692 145139732 41 TACTTGCTCCCCGGCCTCTCCCGCTTCGTCTCCATCGGCCT TACTTGCTCCCCGGCCTCTCCCGCTTTGTCTCCATCGGCCT < 41bp 1 0.333332738212198 1 0.105329096317291 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139712 chr8:145139718 synonymous SNV . 0 27 hm5C_associated_SNPs_19770 0 0 0 0 1 GPAA1 chr8:145139625 3'AG 145139625 Downstream 94bp
chr12 56347543 56347543 1 + C A COAD 56347561 + 56347541 56347581 41 TTCTTGAGCTAAGGGGGACACCCTTGGCCTCCAAGCCAGCC TTATTGAGCTAAGGGGGACACCCTTGGCCTCCAAGCCAGCC < 41bp 1 0.250824776097565 1 0.0615386962890625 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56347561 chr12:56347543 nonsynonymous SNV 0.887 1 3 hm5C_associated_SNPs_19771 0 0 1 0 1 DGKA chr12:56347469 3'AG 56347469 Downstream 75bp
chr1 233482322 233482322 1 + G A COAD 233482335 + 233482315 233482355 41 GGCCCCCGAAGTGATCAAGTCTTCCTTGTTTTCTAAGGGAA GGCCCCCAAAGTGATCAAGTCTTCCTTGTTTTCTAAGGGAA < 41bp 1 0.133437851416527 1 0.0670621395111084 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233482335 chr1:233482322 nonsynonymous SNV 0.960 5 8 hm5C_associated_SNPs_19772 0 0 0 0 1 MAP3K21 chr1:233482368 5'GT 233482368 Upstream 47bp
chr15 101447437 101447437 1 + G A COAD 101447426 + 101447406 101447446 41 ACTCACAGCAGCCGTGTTCACAAAAAATCTCGACAAAGCCC ACTCACAGCAGCCGTGTTCACAAAAAATCTCAACAAAGCCC < 41bp 1 0.755246767055557 1 0.396737605333328 experiment 0.489506465888885 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101447426 chr15:101447437 nonsynonymous SNV 0.984 2 32 hm5C_associated_SNPs_19775 0 0 0 0 1 ALDH1A3 chr15:101447483 5'GT 101447483 Upstream 47bp
chr5 72187658 72187658 1 + C T COAD 72187646 + 72187626 72187666 41 ATTGTAAATAGGAATATATTCAGATGCTAATGCCTCCACTG ATTGTAAATAGGAATATATTCAGATGCTAATGTCTCCACTG < 41bp 1 0.596292159051243 1 0.801020920276642 experiment 0.807415681897515 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187646 chr5:72187658 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_19776 0 0 1 0 2 TNPO1 chr5:72187637 3'AG 72187637 Downstream 22bp
chr5 72187658 72187658 1 + C T COAD 72187646 + 72187626 72187666 41 ATTGTAAATAGGAATATATTCAGATGCTAATGCCTCCACTG ATTGTAAATAGGAATATATTCAGATGCTAATGTCTCCACTG < 41bp 1 0.596292159051243 1 0.801020920276642 experiment 0.807415681897515 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187646 chr5:72187658 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_19776 0 0 1 0 2 TNPO1 chr5:72187723 5'GT 72187723 Upstream 66bp
chr5 72187658 72187658 1 + C T COAD 72187652 + 72187632 72187672 41 AATAGGAATATATTCAGATGCTAATGCCTCCACTGATCCAG AATAGGAATATATTCAGATGCTAATGTCTCCACTGATCCAG < 41bp 1 0.273068046470681 1 0.0739661455154419 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187652 chr5:72187658 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_19777 0 0 1 0 2 TNPO1 chr5:72187637 3'AG 72187637 Downstream 22bp
chr5 72187658 72187658 1 + C T COAD 72187652 + 72187632 72187672 41 AATAGGAATATATTCAGATGCTAATGCCTCCACTGATCCAG AATAGGAATATATTCAGATGCTAATGTCTCCACTGATCCAG < 41bp 1 0.273068046470681 1 0.0739661455154419 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187652 chr5:72187658 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_19777 0 0 1 0 2 TNPO1 chr5:72187723 5'GT 72187723 Upstream 66bp
chr5 72187658 72187658 1 + C T COAD 72187659 + 72187639 72187679 41 ATATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGA ATATATTCAGATGCTAATGTCTCCACTGATCCAGAAATGGA < 41bp 1 0.494494750514969 1 0.918358206748962 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187659 chr5:72187658 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_19778 0 0 1 0 2 TNPO1 chr5:72187637 3'AG 72187637 Downstream 22bp
chr5 72187658 72187658 1 + C T COAD 72187659 + 72187639 72187679 41 ATATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGA ATATATTCAGATGCTAATGTCTCCACTGATCCAGAAATGGA < 41bp 1 0.494494750514969 1 0.918358206748962 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187659 chr5:72187658 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_19778 0 0 1 0 2 TNPO1 chr5:72187723 5'GT 72187723 Upstream 66bp
chr5 72187658 72187658 1 + C T COAD 72187661 + 72187641 72187681 41 ATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAAC ATATTCAGATGCTAATGTCTCCACTGATCCAGAAATGGAAC < 41bp 1 0.122732896035422 1 0.107120424509048 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187661 chr5:72187658 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_19779 0 0 1 0 2 TNPO1 chr5:72187637 3'AG 72187637 Downstream 22bp
chr5 72187658 72187658 1 + C T COAD 72187661 + 72187641 72187681 41 ATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAAC ATATTCAGATGCTAATGTCTCCACTGATCCAGAAATGGAAC < 41bp 1 0.122732896035422 1 0.107120424509048 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187661 chr5:72187658 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_19779 0 0 1 0 2 TNPO1 chr5:72187723 5'GT 72187723 Upstream 66bp
chr5 72187658 72187658 1 + C T COAD 72187662 + 72187642 72187682 41 TATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAACA TATTCAGATGCTAATGTCTCCACTGATCCAGAAATGGAACA < 41bp 1 0.182444494455049 1 0.270195811986923 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187662 chr5:72187658 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_19780 0 0 1 0 2 TNPO1 chr5:72187637 3'AG 72187637 Downstream 22bp
chr5 72187658 72187658 1 + C T COAD 72187662 + 72187642 72187682 41 TATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAACA TATTCAGATGCTAATGTCTCCACTGATCCAGAAATGGAACA < 41bp 1 0.182444494455049 1 0.270195811986923 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187662 chr5:72187658 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_19780 0 0 1 0 2 TNPO1 chr5:72187723 5'GT 72187723 Upstream 66bp
chr5 72187658 72187658 1 + C T COAD 72187664 + 72187644 72187684 41 TTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAACATG TTCAGATGCTAATGTCTCCACTGATCCAGAAATGGAACATG < 41bp 1 0.206568259754855 1 0.0753190219402313 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187664 chr5:72187658 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_19781 0 0 1 0 2 TNPO1 chr5:72187637 3'AG 72187637 Downstream 22bp
chr5 72187658 72187658 1 + C T COAD 72187664 + 72187644 72187684 41 TTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAACATG TTCAGATGCTAATGTCTCCACTGATCCAGAAATGGAACATG < 41bp 1 0.206568259754855 1 0.0753190219402313 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187664 chr5:72187658 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_19781 0 0 1 0 2 TNPO1 chr5:72187723 5'GT 72187723 Upstream 66bp
chr5 72187658 72187658 1 + C T COAD 72187669 + 72187649 72187689 41 ATGCTAATGCCTCCACTGATCCAGAAATGGAACATGTTAAA ATGCTAATGTCTCCACTGATCCAGAAATGGAACATGTTAAA < 41bp 1 0.489985234038513 1 0.820715665817261 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187669 chr5:72187658 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_19782 0 0 1 0 2 TNPO1 chr5:72187637 3'AG 72187637 Downstream 22bp
chr5 72187658 72187658 1 + C T COAD 72187669 + 72187649 72187689 41 ATGCTAATGCCTCCACTGATCCAGAAATGGAACATGTTAAA ATGCTAATGTCTCCACTGATCCAGAAATGGAACATGTTAAA < 41bp 1 0.489985234038513 1 0.820715665817261 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187669 chr5:72187658 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_19782 0 0 1 0 2 TNPO1 chr5:72187723 5'GT 72187723 Upstream 66bp
chr5 72187658 72187658 1 + C T COAD 72187670 + 72187650 72187690 41 TGCTAATGCCTCCACTGATCCAGAAATGGAACATGTTAAAG TGCTAATGTCTCCACTGATCCAGAAATGGAACATGTTAAAG < 41bp 1 0.620455032264837 1 0.534485697746277 experiment 0.759089935470326 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187670 chr5:72187658 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_19783 0 0 1 0 2 TNPO1 chr5:72187637 3'AG 72187637 Downstream 22bp
chr5 72187658 72187658 1 + C T COAD 72187670 + 72187650 72187690 41 TGCTAATGCCTCCACTGATCCAGAAATGGAACATGTTAAAG TGCTAATGTCTCCACTGATCCAGAAATGGAACATGTTAAAG < 41bp 1 0.620455032264837 1 0.534485697746277 experiment 0.759089935470326 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187670 chr5:72187658 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_19783 0 0 1 0 2 TNPO1 chr5:72187723 5'GT 72187723 Upstream 66bp
chr11 95561132 95561132 1 + T G COAD 95561126 + 95561106 95561146 41 GTAACACCTCCCTCCTCCAACGGTATTAATGAGGAGTTGTC GTAACACCTCCCTCCTCCAACGGTATGAATGAGGAGTTGTC < 41bp 1 0.6078590605732 1 0.310861706733704 experiment 0.7842818788536 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP57 ENSG00000166037 CDS Human protein_coding chr11:95561126 chr11:95561132 nonsynonymous SNV 0.105 0 27 hm5C_associated_SNPs_19785 0 0 1 0 1 CEP57 chr11:95561191 5'GT 95561191 Upstream 60bp
chr2 86968148 86968148 1 + G T COAD 86968142 + 86968122 86968162 41 TTCAAAAATTGGCCTCCGACCACAAAGACATCCACAGCAGT TTCAAAAATTGGCCTCCGACCACAAATACATCCACAGCAGT < 41bp 1 0.427325635936648 1 0.714226305484772 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RMND5A ENSG00000153561 CDS Human protein_coding chr2:86968142 chr2:86968148 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_19786 0 0 0 0 2 RMND5A chr2:86968050 3'AG 86968050 Downstream 99bp
chr2 86968148 86968148 1 + G T COAD 86968142 + 86968122 86968162 41 TTCAAAAATTGGCCTCCGACCACAAAGACATCCACAGCAGT TTCAAAAATTGGCCTCCGACCACAAATACATCCACAGCAGT < 41bp 1 0.427325635936648 1 0.714226305484772 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RMND5A ENSG00000153561 CDS Human protein_coding chr2:86968142 chr2:86968148 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_19786 0 0 0 0 2 RMND5A chr2:86968192 5'GT 86968192 Upstream 45bp
chr8 143782013 143782013 1 + C T COAD 143782018 + 143781998 143782038 41 ACGCCAACCTGACTGCGAGACAACGAGATCCAGAGGACTCC ACGCCAACCTGACTGTGAGACAACGAGATCCAGAGGACTCC < 41bp 1 0.686675769724399 1 0.0853424966335297 experiment 0.626648460551202 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LY6K ENSG00000160886 CDS Human protein_coding chr8:143782018 chr8:143782013 nonsynonymous SNV 0.125 0 16 hm5C_associated_SNPs_19787 0 0 1 0 1 LY6K chr8:143782048 5'GT 143782048 Upstream 36bp
chr12 107237706 107237706 1 + G A COAD 107237701 + 107237681 107237721 41 TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTCAAAGA TGTTCCCGAGCCCATCGAAACATCCAAAAATTTCTCAAAGA < 41bp 1 0.128671473970378 1 0.221647083759308 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107237701 chr12:107237706 nonsynonymous SNV 0.993 4 26 hm5C_associated_SNPs_19789 0 0 0 1 2 RIC8B chr12:107237630 3'AG 107237630 Downstream 77bp
chr12 107237706 107237706 1 + G A COAD 107237701 + 107237681 107237721 41 TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTCAAAGA TGTTCCCGAGCCCATCGAAACATCCAAAAATTTCTCAAAGA < 41bp 1 0.128671473970378 1 0.221647083759308 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107237701 chr12:107237706 nonsynonymous SNV 0.993 4 26 hm5C_associated_SNPs_19789 0 0 0 1 2 RIC8B chr12:107237725 5'GT 107237725 Upstream 20bp
chr16 1394258 1394258 1 + C A COAD 1394270 + 1394250 1394290 41 TTCCAACCCTCCTTTGAGATCTGCCCCTTCGAGTCGGAGCT TTCCAACCATCCTTTGAGATCTGCCCCTTCGAGTCGGAGCT < 41bp 1 0.175203013635263 1 0.155116826295853 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1394270 chr16:1394258 synonymous SNV . 0 9 hm5C_associated_SNPs_19791 0 0 0 0 2 BAIAP3 chr16:1394228 3'AG 1394228 Downstream 31bp
chr16 1394258 1394258 1 + C A COAD 1394270 + 1394250 1394290 41 TTCCAACCCTCCTTTGAGATCTGCCCCTTCGAGTCGGAGCT TTCCAACCATCCTTTGAGATCTGCCCCTTCGAGTCGGAGCT < 41bp 1 0.175203013635263 1 0.155116826295853 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1394270 chr16:1394258 synonymous SNV . 0 9 hm5C_associated_SNPs_19791 0 0 0 0 2 BAIAP3 chr16:1394318 5'GT 1394318 Upstream 61bp
chr1 109772139 109772139 1 + A G COAD 109772124 + 109772104 109772144 41 GGAGCGGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCC GGAGCGGATAAAGTTGGAAGCAGAGCGGTTTGAGAGCCTCC < 41bp 1 0.622503036173608 1 0.847208321094513 experiment 0.754993927652783 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SARS ENSG00000031698 CDS Human protein_coding chr1:109772124 chr1:109772139 nonsynonymous SNV 0.996 0 36 hm5C_associated_SNPs_19793 0 0 1 0 1 SARS chr1:109772194 5'GT 109772194 Upstream 56bp
chr1 109772139 109772139 1 + A G COAD 109772129 + 109772109 109772149 41 GGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCCGAGAG GGATAAAGTTGGAAGCAGAGCGGTTTGAGAGCCTCCGAGAG < 41bp 1 0.549610953455488 1 0.304604649543762 experiment 0.900778093089025 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SARS ENSG00000031698 CDS Human protein_coding chr1:109772129 chr1:109772139 nonsynonymous SNV 0.996 0 31 hm5C_associated_SNPs_19794 0 0 1 0 1 SARS chr1:109772194 5'GT 109772194 Upstream 56bp
chr9 91083295 91083295 1 + C T COAD 91083287 + 91083267 91083307 41 TTTTTTTTTTTAATCCCCAGCGACATCTCGAATCAGCGATG TTTTTTTTTTTAATCCCCAGCGACATCTTGAATCAGCGATG < 41bp 1 0.333441667927077 1 0.441511482000351 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPIN1 ENSG00000106723 CDS Human protein_coding chr9:91083287 chr9:91083295 stopgain 0.612 0 29 hm5C_associated_SNPs_19795 0 0 1 0 1 SPIN1 chr9:91083287 3'AG 91083287 Downstream 9bp
chr8 104343622 104343622 1 + T C COAD 104343630 + 104343610 104343650 41 AGAGCAACAATTTGCAGGTCCCCAGTTCTTCAGAACCAAGC AGAGCAACAATTCGCAGGTCCCCAGTTCTTCAGAACCAAGC < 41bp 1 0.243253250329792 1 0.0627421140670776 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FZD6 ENSG00000164930 CDS Human protein_coding chr8:104343630 chr8:104343622 nonsynonymous SNV 0.728 0 13 hm5C_associated_SNPs_19796 0 0 1 0 1 FZD6 chr8:104343569 3'AG 104343569 Downstream 54bp
chr8 124811865 124811865 1 + A G COAD 124811871 + 124811851 124811891 41 TGTCCAAAGGTACAAGACTTCGAAAACTGCCAGATATATTT TGTCCAAAGGTACAGGACTTCGAAAACTGCCAGATATATTT < 41bp 1 0.715420352373028 1 0.717802464962006 experiment 0.569159295253943 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124811871 chr8:124811865 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_19797 0 0 1 0 1 FAM91A1 chr8:124811894 5'GT 124811894 Upstream 30bp
chr1 53420454 53420454 1 + G C COAD 53420465 + 53420445 53420485 41 AGAAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT AGAAGATGACTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT < 41bp 1 0.367534661542813 1 0.183730065822601 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53420465 chr1:53420454 nonsynonymous SNV 0.822 1 10 hm5C_associated_SNPs_19799 0 0 1 0 2 SCP2 chr1:53420412 3'AG 53420412 Downstream 43bp
chr1 53420454 53420454 1 + G C COAD 53420465 + 53420445 53420485 41 AGAAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT AGAAGATGACTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT < 41bp 1 0.367534661542813 1 0.183730065822601 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53420465 chr1:53420454 nonsynonymous SNV 0.822 1 10 hm5C_associated_SNPs_19799 0 0 1 0 2 SCP2 chr1:53420476 5'GT 53420476 Upstream 23bp
chr7 65610471 65610471 1 + C T COAD 65610481 + 65610461 65610501 41 CCTGTGACTGCTGTGGAGATCCAGCTGGTGAGTGAAGGGCG CCTGTGACTGTTGTGGAGATCCAGCTGGTGAGTGAAGGGCG < 41bp 1 0.576697146955096 1 0.432409405708313 experiment 0.846605706089808 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CRCP ENSG00000241258;ENSG00000249319 CDS Human other chr7:65610481 chr7:65610471 nonsynonymous SNV 0.972 3 11 hm5C_associated_SNPs_19800 0 0 1 3 2 CRCP chr7:65610430 3'AG 65610430 Downstream 42bp
chr7 65610471 65610471 1 + C T COAD 65610481 + 65610461 65610501 41 CCTGTGACTGCTGTGGAGATCCAGCTGGTGAGTGAAGGGCG CCTGTGACTGTTGTGGAGATCCAGCTGGTGAGTGAAGGGCG < 41bp 1 0.576697146955096 1 0.432409405708313 experiment 0.846605706089808 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CRCP ENSG00000241258;ENSG00000249319 CDS Human other chr7:65610481 chr7:65610471 nonsynonymous SNV 0.972 3 11 hm5C_associated_SNPs_19800 0 0 1 3 2 CRCP chr7:65610487 5'GT 65610487 Upstream 17bp
chr7 101960924 101960924 1 + G A COAD 101960919 + 101960899 101960939 41 CCCACTGGAGTCAGGGGGCTCGGCCGACATCACCCTTCGCA CCCACTGGAGTCAGGGGGCTCGGCCAACATCACCCTTCGCA < 41bp 1 0.408875814088751 1 0.679640889167786 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SH2B2 ENSG00000160999 CDS Human protein_coding chr7:101960919 chr7:101960924 nonsynonymous SNV 0.291 2 26 hm5C_associated_SNPs_19801 0 0 0 0 1 SH2B2 chr7:101960969 5'GT 101960969 Upstream 46bp
chr9 131298738 131298738 1 + G A COAD 131298744 + 131298724 131298764 41 TATCATCCAGCTCCGGTGGCCATATGGAAACCGACAGGAGG TATCATCCAGCTCCAGTGGCCATATGGAAACCGACAGGAGG < 41bp 1 0.0964740396263618 1 0.151069939136505 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLE1 ENSG00000119392 CDS Human protein_coding chr9:131298744 chr9:131298738 nonsynonymous SNV 0.995 0 15 hm5C_associated_SNPs_19802 0 0 0 0 1 GLE1 chr9:131298763 5'GT 131298763 Upstream 26bp
chr9 135942520 135942520 1 + G A COAD 135942509 + 135942489 135942529 41 GGGTTGCCCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTC GGGTTGCCCTGTGGGTGATGCCGCCAGGATGACCCAGTGTC < 41bp 1 0.1893876561312 1 0.124866485595703 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942509 chr9:135942520 nonsynonymous SNV 0.956 3 32 hm5C_associated_SNPs_19805 0 0 1 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 46bp
chr9 135942520 135942520 1 + G A COAD 135942512 + 135942492 135942532 41 TTGCCCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTCTGA TTGCCCTGTGGGTGATGCCGCCAGGATGACCCAGTGTCTGA < 41bp 1 0.437589703619267 1 0.413534045219421 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942512 chr9:135942520 nonsynonymous SNV 0.956 3 29 hm5C_associated_SNPs_19806 0 0 1 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 46bp
chr9 135942520 135942520 1 + G A COAD 135942521 + 135942501 135942541 41 GGGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTG GGGTGATGCCGCCAGGATGACCCAGTGTCTGAAGGTTACTG < 41bp 1 0.315074595520656 1 0.0358794331550598 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942521 chr9:135942520 nonsynonymous SNV 0.956 3 20 hm5C_associated_SNPs_19807 0 0 1 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 46bp
chr9 135942520 135942520 1 + G A COAD 135942522 + 135942502 135942542 41 GGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTGA GGTGATGCCGCCAGGATGACCCAGTGTCTGAAGGTTACTGA < 41bp 1 0.4812011365173 1 0.391193956136703 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942522 chr9:135942520 nonsynonymous SNV 0.956 3 19 hm5C_associated_SNPs_19808 0 0 1 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 46bp
chr9 135942520 135942520 1 + G A COAD 135942523 + 135942503 135942543 41 GTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTGAT GTGATGCCGCCAGGATGACCCAGTGTCTGAAGGTTACTGAT < 41bp 1 0.434595146523855 1 0.616484403610229 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942523 chr9:135942520 nonsynonymous SNV 0.956 3 18 hm5C_associated_SNPs_19809 0 0 1 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 46bp
chr9 135942520 135942520 1 + G A COAD 135942539 + 135942519 135942559 41 GGCCCAGTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGC GACCCAGTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGC < 41bp 1 0.564906128315826 1 0.0393069982528687 experiment 0.870187743368348 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942539 chr9:135942520 nonsynonymous SNV 0.956 3 2 hm5C_associated_SNPs_19810 0 0 1 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 46bp
chr10 72324246 72324246 1 + C T COAD 72324236 + 72324216 72324256 41 TACCTCCACCTGGAGAAGGCCGACTCCTGGCAGAGGCCCTT TACCTCCACCTGGAGAAGGCCGACTCCTGGTAGAGGCCCTT < 41bp 1 0.143416046023176 1 0.461002051830292 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72324236 chr10:72324246 stopgain 0.990 1 31 hm5C_associated_SNPs_19811 0 0 1 0 1 PALD1 chr10:72324275 5'GT 72324275 Upstream 30bp
chr5 72201211 72201211 1 + C T COAD 72201196 + 72201176 72201216 41 GTTTCTCTGACCAGTTTCCTCTTCCCTTAAAAGAGCGTCTT GTTTCTCTGACCAGTTTCCTCTTCCCTTAAAAGAGTGTCTT < 41bp 1 0.170521193017412 1 0.41856837272644 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72201196 chr5:72201211 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_19812 0 0 1 0 1 TNPO1 chr5:72201130 3'AG 72201130 Downstream 82bp
chrX 53223831 53223831 1 - T C COAD 53223826 - 53223806 53223846 41 GCCCAGTCCACTGGCATCATCGAGCACGGCCTCCTCTACAA GCCCAGTCCACTGGCGTCATCGAGCACGGCCTCCTCTACAA < 41bp 1 0.611709167607299 1 0.920989274978638 experiment 0.776581664785402 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KDM5C ENSG00000126012 CDS Human protein_coding chrX:53223826 chrX:53223831 synonymous SNV . 0 16 hm5C_associated_SNPs_19813 0 0 1 0 1 KDM5C chrX:53223920 3'AG 53223920 Downstream 90bp
chr19 40704317 40704317 1 + G A COAD 40704298 + 40704278 40704318 41 ACAGTCCTGATCCTGGAGGCCATCGAGAACCACAACCTCGC ACAGTCCTGATCCTGGAGGCCATCGAGAACCACAACCTCAC < 41bp 1 0.149869916039624 1 0.0874300897121429 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40704298 chr19:40704317 nonsynonymous SNV 0.999 0 40 hm5C_associated_SNPs_19814 0 0 0 0 1 MAP3K10 chr19:40704282 3'AG 40704282 Downstream 36bp
chr7 44741172 44741172 1 + C T COAD 44741191 + 44741171 44741211 41 GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC GTGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC < 41bp 1 0.199445253518432 1 0.707032561302185 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44741191 chr7:44741172 nonsynonymous SNV 0.997 5 2 hm5C_associated_SNPs_19815 0 0 1 0 2 OGDH chr7:44741142 3'AG 44741142 Downstream 31bp
chr7 44741172 44741172 1 + C T COAD 44741191 + 44741171 44741211 41 GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC GTGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC < 41bp 1 0.199445253518432 1 0.707032561302185 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44741191 chr7:44741172 nonsynonymous SNV 0.997 5 2 hm5C_associated_SNPs_19815 0 0 1 0 2 OGDH chr7:44741214 5'GT 44741214 Upstream 43bp
chr9 116971982 116971982 1 + G A COAD 116971985 + 116971965 116972005 41 GGCTCCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAA GGCTCCCAGGGCTCTTCAGCCTGCCAGGGTCTGATGGAGAA < 41bp 1 0.165048248518803 1 0.345970690250397 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971985 chr9:116971982 nonsynonymous SNV 0.989 4 18 hm5C_associated_SNPs_19816 0 0 1 0 2 COL27A1 chr9:116971955 3'AG 116971955 Downstream 28bp
chr9 116971982 116971982 1 + G A COAD 116971985 + 116971965 116972005 41 GGCTCCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAA GGCTCCCAGGGCTCTTCAGCCTGCCAGGGTCTGATGGAGAA < 41bp 1 0.165048248518803 1 0.345970690250397 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971985 chr9:116971982 nonsynonymous SNV 0.989 4 18 hm5C_associated_SNPs_19816 0 0 1 0 2 COL27A1 chr9:116972008 5'GT 116972008 Upstream 27bp
chr9 116971982 116971982 1 + G A COAD 116971988 + 116971968 116972008 41 TCCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACGA TCCCAGGGCTCTTCAGCCTGCCAGGGTCTGATGGAGAACGA < 41bp 1 0.149253872567295 1 0.773936092853546 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971988 chr9:116971982 nonsynonymous SNV 0.989 4 15 hm5C_associated_SNPs_19817 0 0 1 0 2 COL27A1 chr9:116971955 3'AG 116971955 Downstream 28bp
chr9 116971982 116971982 1 + G A COAD 116971988 + 116971968 116972008 41 TCCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACGA TCCCAGGGCTCTTCAGCCTGCCAGGGTCTGATGGAGAACGA < 41bp 1 0.149253872567295 1 0.773936092853546 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971988 chr9:116971982 nonsynonymous SNV 0.989 4 15 hm5C_associated_SNPs_19817 0 0 1 0 2 COL27A1 chr9:116972008 5'GT 116972008 Upstream 27bp
chr9 116971982 116971982 1 + G A COAD 116971989 + 116971969 116972009 41 CCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACGAG CCCAGGGCTCTTCAGCCTGCCAGGGTCTGATGGAGAACGAG < 41bp 1 0.281388220789576 1 0.679240465164185 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971989 chr9:116971982 nonsynonymous SNV 0.989 4 14 hm5C_associated_SNPs_19818 0 0 1 0 2 COL27A1 chr9:116971955 3'AG 116971955 Downstream 28bp
chr9 116971982 116971982 1 + G A COAD 116971989 + 116971969 116972009 41 CCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACGAG CCCAGGGCTCTTCAGCCTGCCAGGGTCTGATGGAGAACGAG < 41bp 1 0.281388220789576 1 0.679240465164185 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971989 chr9:116971982 nonsynonymous SNV 0.989 4 14 hm5C_associated_SNPs_19818 0 0 1 0 2 COL27A1 chr9:116972008 5'GT 116972008 Upstream 27bp
chr17 41345565 41345565 1 + A G COAD 41345576 + 41345556 41345596 41 TATCATAGTAGATCCTTTCCCCTCCGAAGAGAGCCCTGATA TATCATAGTGGATCCTTTCCCCTCCGAAGAGAGCCCTGATA < 41bp 1 0.167109578690087 1 0.385305523872375 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41345576 chr17:41345565 synonymous SNV . 0 10 hm5C_associated_SNPs_19819 0 0 1 0 1 NBR1 chr17:41345655 5'GT 41345655 Upstream 91bp
chr19 14512321 14512321 1 + C A COAD 14512320 + 14512300 14512340 41 CTTGAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA CTTGAAGATATCATGAGGATCATGGCCAAGAGCCTGCCTAA < 41bp 1 0.527825590664819 1 0.103241831064224 experiment 0.944348818670363 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14512320 chr19:14512321 nonsynonymous SNV 0.001 3 22 hm5C_associated_SNPs_19820 0 0 1 0 1 ADGRE5 chr19:14512375 5'GT 14512375 Upstream 55bp
chr1 6681491 6681491 1 + G A COAD 6681488 + 6681468 6681508 41 CAGATGACGATTCCTGGGACCTCGTGACCTGCTTCTGCATG CAGATGACGATTCCTGGGACCTCATGACCTGCTTCTGCATG < 41bp 1 0.206064383879523 1 0.00625073909759521 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF13 ENSG00000116273 CDS Human protein_coding chr1:6681488 chr1:6681491 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_19822 0 0 1 0 1 PHF13 chr1:6681471 3'AG 6681471 Downstream 21bp
chr14 96998735 96998735 1 + A T COAD 96998728 + 96998708 96998748 41 CATTGACAACTTCAGGTTAACTCTGAGAGCTATCAAACTAT CATTGACAACTTCAGGTTAACTCTGAGTGCTATCAAACTAT < 41bp 1 0.505166377863486 1 0.0705487728118896 experiment 0.989667244273027 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:96998728 chr14:96998735 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_19823 0 0 1 0 2 PAPOLA chr14:96998668 3'AG 96998668 Downstream 68bp
chr14 96998735 96998735 1 + A T COAD 96998728 + 96998708 96998748 41 CATTGACAACTTCAGGTTAACTCTGAGAGCTATCAAACTAT CATTGACAACTTCAGGTTAACTCTGAGTGCTATCAAACTAT < 41bp 1 0.505166377863486 1 0.0705487728118896 experiment 0.989667244273027 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:96998728 chr14:96998735 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_19823 0 0 1 0 2 PAPOLA chr14:96998757 5'GT 96998757 Upstream 23bp
chr1 41215348 41215348 1 + G A COAD 41215344 + 41215324 41215364 41 TTCACACAGAAGATAACAAGCGCCGGACTCTACAGGTATTA TTCACACAGAAGATAACAAGCGCCAGACTCTACAGGTATTA < 41bp 1 0.743054521050309 1 0.425836771726608 experiment 0.513890957899382 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NFYC ENSG00000066136 CDS Human protein_coding chr1:41215344 chr1:41215348 nonsynonymous SNV 0.990 4 25 hm5C_associated_SNPs_19824 0 0 1 0 1 NFYC chr1:41215358 5'GT 41215358 Upstream 11bp
chr1 171527219 171527219 1 + A G COAD 171527220 + 171527200 171527240 41 ACAGTCACATGGCACTCTGACAGCTGAATTATGGGATAACA ACAGTCACATGGCACTCTGGCAGCTGAATTATGGGATAACA < 41bp 1 0.269258789972442 1 0.334479421377182 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171527220 chr1:171527219 nonsynonymous SNV 0.989 0 20 hm5C_associated_SNPs_19828 0 0 1 0 1 PRRC2C chr1:171527282 5'GT 171527282 Upstream 64bp
chr12 112321467 112321467 1 + G A COAD 112321465 + 112321445 112321485 41 TTTTACTCCAAACACCACAGCCGGACTATCCCAAAGGATAT TTTTACTCCAAACACCACAGCCAGACTATCCCAAAGGATAT < 41bp 1 0.254942832978757 1 0.110167950391769 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPKAPK5 ENSG00000089022 CDS Human protein_coding chr12:112321465 chr12:112321467 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_19830 0 0 1 0 1 MAPKAPK5 chr12:112321385 3'AG 112321385 Downstream 83bp
chr12 112321467 112321467 1 + G A COAD 112321470 + 112321450 112321490 41 CTCCAAACACCACAGCCGGACTATCCCAAAGGATATGCGAA CTCCAAACACCACAGCCAGACTATCCCAAAGGATATGCGAA < 41bp 1 0.0560072657331333 1 0.177148729562759 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPKAPK5 ENSG00000089022 CDS Human protein_coding chr12:112321470 chr12:112321467 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_19831 0 0 1 0 1 MAPKAPK5 chr12:112321385 3'AG 112321385 Downstream 83bp
chr16 81053859 81053859 1 + G A COAD 81053845 + 81053825 81053865 41 CCGTACGCCTTCACGTCCTCCTCCATGCTGAGGCGCAATAC CCGTACGCCTTCACGTCCTCCTCCATGCTGAGGCACAATAC < 41bp 1 0.773559172785667 1 0.918947577476501 experiment 0.452881654428667 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CENPN ENSG00000166451 CDS Human protein_coding chr16:81053845 chr16:81053859 nonsynonymous SNV 0.002 1 35 hm5C_associated_SNPs_19832 0 0 1 0 1 CENPN chr16:81053881 5'GT 81053881 Upstream 23bp
chr12 132326262 132326262 1 + G A COAD 132326257 + 132326237 132326277 41 GTGGCCGCTGCACACTCCATCATGCGGCCGTACTACCAGGG GTGGCCGCTGCACACTCCATCATGCAGCCGTACTACCAGGG < 41bp 1 0.198162748866457 1 0.570099771022797 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132326257 chr12:132326262 nonsynonymous SNV 0.270 0 26 hm5C_associated_SNPs_19833 0 0 0 0 2 MMP17 chr12:132326169 3'AG 132326169 Downstream 94bp
chr12 132326262 132326262 1 + G A COAD 132326257 + 132326237 132326277 41 GTGGCCGCTGCACACTCCATCATGCGGCCGTACTACCAGGG GTGGCCGCTGCACACTCCATCATGCAGCCGTACTACCAGGG < 41bp 1 0.198162748866457 1 0.570099771022797 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132326257 chr12:132326262 nonsynonymous SNV 0.270 0 26 hm5C_associated_SNPs_19833 0 0 0 0 2 MMP17 chr12:132326345 5'GT 132326345 Upstream 84bp
chr1 39888087 39888087 1 + G T COAD 39888071 + 39888051 39888091 41 TCAGAAAGAACAAGTGGATCCTCTTCAGATGAAATTGCAGC TCAGAAAGAACAAGTGGATCCTCTTCAGATGAAATTTCAGC < 41bp 1 0.0283162211182888 1 0.192198157310486 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39888071 chr1:39888087 nonsynonymous SNV 0.999 3 37 hm5C_associated_SNPs_19834 0 0 1 0 1 MACF1 chr1:39888046 3'AG 39888046 Downstream 42bp
chr11 71939506 71939506 1 + C T COAD 71939492 + 71939472 71939512 41 TGTGTGCGCCCTGCTTCTTCCTGTAGAGGGTGAGCGAGAGC TGTGTGCGCCCTGCTTCTTCCTGTAGAGGGTGAGTGAGAGC < 41bp 1 0.628330547759138 1 0.705841600894928 experiment 0.743338904481723 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71939492 chr11:71939506 stopgain 0.873 1 35 hm5C_associated_SNPs_19835 0 0 1 0 1 INPPL1 chr11:71939542 5'GT 71939542 Upstream 37bp
chr1 145663167 145663167 1 + C T COAD 145663168 + 145663148 145663188 41 GTCTTTACTAGCTTTGGGGCCATTTGGATCACACGATGTTT GTCTTTACTAGCTTTGGGGTCATTTGGATCACACGATGTTT < 41bp 1 0.0313023617947198 1 0.0487439036369324 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF115 ENSG00000121848 CDS Human other chr1:145663168 chr1:145663167 synonymous SNV . 0 20 hm5C_associated_SNPs_19842 0 0 1 0 1 RNF115 chr1:145663159 3'AG 145663159 Downstream 9bp
chr7 100867230 100867230 1 + G A COAD 100867232 + 100867212 100867252 41 CTGCAGGTGTCTGAAGTGGACTGTGTGAGCCTGGGCATTCC CTGCAGGTGTCTGAAGTGAACTGTGTGAGCCTGGGCATTCC < 41bp 1 0.738340385973267 1 0.203435957431793 experiment 0.523319228053466 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100867232 chr7:100867230 stopgain 0.991 1 19 hm5C_associated_SNPs_19843 0 0 1 0 1 ZNHIT1 chr7:100867218 3'AG 100867218 Downstream 13bp
chr7 100867230 100867230 1 + G A COAD 100867242 + 100867222 100867262 41 CTGAAGTGGACTGTGTGAGCCTGGGCATTCCCAGAGAGGAA CTGAAGTGAACTGTGTGAGCCTGGGCATTCCCAGAGAGGAA < 41bp 1 0.732362733285964 1 0.171965599060059 experiment 0.535274533428071 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100867242 chr7:100867230 stopgain 0.991 1 9 hm5C_associated_SNPs_19844 0 0 1 0 1 ZNHIT1 chr7:100867218 3'AG 100867218 Downstream 13bp
chr10 75830535 75830535 1 + T C COAD 75830552 + 75830532 75830572 41 TCCTCTCTGGAACATCAGACCTGCTCCTTACCTTCGATGAG TCCCCTCTGGAACATCAGACCTGCTCCTTACCTTCGATGAG < 41bp 1 0.329063844300994 1 0.0345292985439301 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75830552 chr10:75830535 nonsynonymous SNV 0.996 4 4 hm5C_associated_SNPs_19845 0 0 1 0 1 VCL chr10:75830578 5'GT 75830578 Upstream 44bp
chr19 45975931 45975931 1 + C T COAD 45975941 + 45975921 45975961 41 AGATCCCCTACGAAGAGGGGCCCGGGCCGGGCCCGCTGGCG AGATCCCCTATGAAGAGGGGCCCGGGCCGGGCCCGCTGGCG < 41bp 1 0.421687963725743 1 0.31423231959343 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975941 chr19:45975931 synonymous SNV . 0 11 hm5C_associated_SNPs_19846 0 0 0 0 1 FOSB chr19:45975964 5'GT 45975964 Upstream 34bp
chr19 45975931 45975931 1 + C T COAD 45975942 + 45975922 45975962 41 GATCCCCTACGAAGAGGGGCCCGGGCCGGGCCCGCTGGCGG GATCCCCTATGAAGAGGGGCCCGGGCCGGGCCCGCTGGCGG < 41bp 1 0.647935696817135 1 0.518009185791016 experiment 0.704128606365731 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975942 chr19:45975931 synonymous SNV . 0 10 hm5C_associated_SNPs_19847 0 0 0 0 1 FOSB chr19:45975964 5'GT 45975964 Upstream 34bp
chr19 45975931 45975931 1 + C T COAD 45975943 + 45975923 45975963 41 ATCCCCTACGAAGAGGGGCCCGGGCCGGGCCCGCTGGCGGA ATCCCCTATGAAGAGGGGCCCGGGCCGGGCCCGCTGGCGGA < 41bp 1 0.721966973616165 1 0.793200731277466 experiment 0.55606605276767 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975943 chr19:45975931 synonymous SNV . 0 9 hm5C_associated_SNPs_19848 0 0 0 0 1 FOSB chr19:45975964 5'GT 45975964 Upstream 34bp
chr1 109803848 109803848 1 + C T COAD 109803866 + 109803846 109803886 41 CGCGGCCTGCGCCAGCGTTTCCACTTCACCCTGGCCCTCTC CGTGGCCTGCGCCAGCGTTTCCACTTCACCCTGGCCCTCTC < 41bp 1 0.175472475391602 1 0.33540678024292 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109803866 chr1:109803848 synonymous SNV . 0 3 hm5C_associated_SNPs_19849 0 0 1 0 1 CELSR2 chr1:109803886 5'GT 109803886 Upstream 39bp
chr12 132400513 132400513 1 + T C COAD 132400500 + 132400480 132400520 41 TGCCGCCTGCACAGCGCCCCCAACCTGTCTGACTTGCACGT TGCCGCCTGCACAGCGCCCCCAACCTGTCTGACCTGCACGT < 41bp 1 0.221488851074296 1 0.113116055727005 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ULK1 ENSG00000177169 CDS Human protein_coding chr12:132400500 chr12:132400513 synonymous SNV . 0 34 hm5C_associated_SNPs_19850 0 0 1 0 1 ULK1 chr12:132400436 3'AG 132400436 Downstream 78bp
chr14 73576075 73576075 1 + C T COAD 73576058 + 73576038 73576078 41 TCACTTTTACAGAGGAAGTGCTCTTCAGAAAAGGTTGCGTG TCACTTTTACAGAGGAAGTGCTCTTCAGAAAAGGTTGTGTG < 41bp 1 0.0944222552452767 1 0.0988493263721466 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73576058 chr14:73576075 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_19851 0 0 1 0 1 RBM25 chr14:73576050 3'AG 73576050 Downstream 26bp
chr14 73576075 73576075 1 + C T COAD 73576060 + 73576040 73576080 41 ACTTTTACAGAGGAAGTGCTCTTCAGAAAAGGTTGCGTGAT ACTTTTACAGAGGAAGTGCTCTTCAGAAAAGGTTGTGTGAT < 41bp 1 0.553176503920816 1 0.264403343200684 experiment 0.893646992158368 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73576060 chr14:73576075 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_19852 0 0 1 0 1 RBM25 chr14:73576050 3'AG 73576050 Downstream 26bp
chr19 19638843 19638843 1 + C T COAD 19638852 + 19638832 19638872 41 TCCACACAACCCGCTGGGTGCCCCCCTTGATCGGGGAGCTG TCCACACAACCTGCTGGGTGCCCCCCTTGATCGGGGAGCTG < 41bp 1 0.114956962461149 1 0.039694756269455 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19638852 chr19:19638843 nonsynonymous SNV 0.377 4 12 hm5C_associated_SNPs_19855 0 0 1 0 2 NDUFA13 chr19:19638816 3'AG 19638816 Downstream 28bp
chr19 19638843 19638843 1 + C T COAD 19638852 + 19638832 19638872 41 TCCACACAACCCGCTGGGTGCCCCCCTTGATCGGGGAGCTG TCCACACAACCTGCTGGGTGCCCCCCTTGATCGGGGAGCTG < 41bp 1 0.114956962461149 1 0.039694756269455 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19638852 chr19:19638843 nonsynonymous SNV 0.377 4 12 hm5C_associated_SNPs_19855 0 0 1 0 2 NDUFA13 chr19:19638925 5'GT 19638925 Upstream 83bp
chr14 75746599 75746599 1 + C T COAD 75746582 + 75746562 75746602 41 CCTTCTGTTTTGTTCTAGGACTTCTGCACGGACCTGGCCGT CCTTCTGTTTTGTTCTAGGACTTCTGCACGGACCTGGTCGT < 41bp 1 0.177200683583836 1 0.0185528993606567 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746582 chr14:75746599 nonsynonymous SNV 0.981 0 38 hm5C_associated_SNPs_19856 0 0 1 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 20bp
chr14 75746599 75746599 1 + C T COAD 75746590 + 75746570 75746610 41 TTTGTTCTAGGACTTCTGCACGGACCTGGCCGTCTCCAGTG TTTGTTCTAGGACTTCTGCACGGACCTGGTCGTCTCCAGTG < 41bp 1 0.418926907171918 1 0.165351539850235 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746590 chr14:75746599 nonsynonymous SNV 0.981 0 30 hm5C_associated_SNPs_19857 0 0 1 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 20bp
chr14 75746599 75746599 1 + C T COAD 75746594 + 75746574 75746614 41 TTCTAGGACTTCTGCACGGACCTGGCCGTCTCCAGTGCCAA TTCTAGGACTTCTGCACGGACCTGGTCGTCTCCAGTGCCAA < 41bp 1 0.215671228740254 1 0.10753932595253 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746594 chr14:75746599 nonsynonymous SNV 0.981 0 26 hm5C_associated_SNPs_19858 0 0 1 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 20bp
chr14 75746599 75746599 1 + C T COAD 75746595 + 75746575 75746615 41 TCTAGGACTTCTGCACGGACCTGGCCGTCTCCAGTGCCAAC TCTAGGACTTCTGCACGGACCTGGTCGTCTCCAGTGCCAAC < 41bp 1 0.560883116750792 1 0.0788122415542603 experiment 0.878233766498416 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746595 chr14:75746599 nonsynonymous SNV 0.981 0 25 hm5C_associated_SNPs_19859 0 0 1 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 20bp
chr14 75746599 75746599 1 + C T COAD 75746600 + 75746580 75746620 41 GACTTCTGCACGGACCTGGCCGTCTCCAGTGCCAACTTCAT GACTTCTGCACGGACCTGGTCGTCTCCAGTGCCAACTTCAT < 41bp 1 0.0851974095351506 1 0.037002295255661 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746600 chr14:75746599 nonsynonymous SNV 0.981 0 20 hm5C_associated_SNPs_19860 0 0 1 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 20bp
chr14 75746599 75746599 1 + C T COAD 75746605 + 75746585 75746625 41 CTGCACGGACCTGGCCGTCTCCAGTGCCAACTTCATTCCCA CTGCACGGACCTGGTCGTCTCCAGTGCCAACTTCATTCCCA < 41bp 1 0.395048525990696 1 0.246343225240707 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746605 chr14:75746599 nonsynonymous SNV 0.981 0 15 hm5C_associated_SNPs_19861 0 0 1 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 20bp
chr14 75746599 75746599 1 + C T COAD 75746606 + 75746586 75746626 41 TGCACGGACCTGGCCGTCTCCAGTGCCAACTTCATTCCCAC TGCACGGACCTGGTCGTCTCCAGTGCCAACTTCATTCCCAC < 41bp 1 0.453106760624916 1 0.81266975402832 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746606 chr14:75746599 nonsynonymous SNV 0.981 0 14 hm5C_associated_SNPs_19862 0 0 1 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 20bp
chr14 75746599 75746599 1 + C T COAD 75746611 + 75746591 75746631 41 GGACCTGGCCGTCTCCAGTGCCAACTTCATTCCCACGGTCA GGACCTGGTCGTCTCCAGTGCCAACTTCATTCCCACGGTCA < 41bp 1 0.0674477231258913 1 0.0567258298397064 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746611 chr14:75746599 nonsynonymous SNV 0.981 0 9 hm5C_associated_SNPs_19863 0 0 1 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 20bp
chr14 75746599 75746599 1 + C T COAD 75746612 + 75746592 75746632 41 GACCTGGCCGTCTCCAGTGCCAACTTCATTCCCACGGTCAC GACCTGGTCGTCTCCAGTGCCAACTTCATTCCCACGGTCAC < 41bp 1 0.28765995949241 1 0.145311832427979 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746612 chr14:75746599 nonsynonymous SNV 0.981 0 8 hm5C_associated_SNPs_19864 0 0 1 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 20bp
chr14 75746599 75746599 1 + C T COAD 75746615 + 75746595 75746635 41 CTGGCCGTCTCCAGTGCCAACTTCATTCCCACGGTCACTGC CTGGTCGTCTCCAGTGCCAACTTCATTCCCACGGTCACTGC < 41bp 1 0.554517272205697 1 0.425160646438599 experiment 0.890965455588606 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746615 chr14:75746599 nonsynonymous SNV 0.981 0 5 hm5C_associated_SNPs_19865 0 0 1 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 20bp
chr14 75746599 75746599 1 + C T COAD 75746618 + 75746598 75746638 41 GCCGTCTCCAGTGCCAACTTCATTCCCACGGTCACTGCCAT GTCGTCTCCAGTGCCAACTTCATTCCCACGGTCACTGCCAT < 41bp 1 0.030707153654926 1 0.573199331760406 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746618 chr14:75746599 nonsynonymous SNV 0.981 0 2 hm5C_associated_SNPs_19866 0 0 1 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 20bp
chr20 62521229 62521229 1 + C T COAD 62521246 + 62521226 62521266 41 GAACGGCAGTGACAACCTCCCTTCCTCAGCGGGGAGTGGTG GAATGGCAGTGACAACCTCCCTTCCTCAGCGGGGAGTGGTG < 41bp 1 0.235406037825065 1 0.0503987073898315 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TPD52L2 ENSG00000101150 CDS Human protein_coding chr20:62521246 chr20:62521229 synonymous SNV 0.971 0 4 hm5C_associated_SNPs_19867 0 0 1 0 1 TPD52L2 chr20:62521203 3'AG 62521203 Downstream 27bp
chr16 67006817 67006817 1 + G A COAD 67006809 + 67006789 67006829 41 CCCAATTCAACCAGGCGGAACAATATCTGGAGATCAACCCA CCCAATTCAACCAGGCGGAACAATATCTAGAGATCAACCCA < 41bp 1 0.268001301920251 1 0.218219369649887 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:67006809 chr16:67006817 synonymous SNV . 0 29 hm5C_associated_SNPs_19868 0 0 1 0 1 CES3 chr16:67006757 3'AG 67006757 Downstream 61bp
chr6 125550343 125550343 1 + G C COAD 125550344 + 125550324 125550364 41 GAGATAAAACAAAAACTCGGCATGAACCTGATGAATGAATT GAGATAAAACAAAAACTCGCCATGAACCTGATGAATGAATT < 41bp 1 0.249308268807236 1 0.0699096918106079 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPD52L1 ENSG00000111907 CDS Human protein_coding chr6:125550344 chr6:125550343 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_19869 0 0 1 0 2 TPD52L1 chr6:125550264 3'AG 125550264 Downstream 80bp
chr6 125550343 125550343 1 + G C COAD 125550344 + 125550324 125550364 41 GAGATAAAACAAAAACTCGGCATGAACCTGATGAATGAATT GAGATAAAACAAAAACTCGCCATGAACCTGATGAATGAATT < 41bp 1 0.249308268807236 1 0.0699096918106079 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPD52L1 ENSG00000111907 CDS Human protein_coding chr6:125550344 chr6:125550343 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_19869 0 0 1 0 2 TPD52L1 chr6:125550412 5'GT 125550412 Upstream 70bp
chr3 58092595 58092595 1 + G C COAD 58092593 + 58092573 58092613 41 AGCCACGGGAGGCTACAACCCTGATCTGGTGAATCAGCTGC AGCCACGGGAGGCTACAACCCTCATCTGGTGAATCAGCTGC < 41bp 1 0.324934037900224 1 0.504129230976105 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58092593 chr3:58092595 nonsynonymous SNV 0.994 5 23 hm5C_associated_SNPs_19873 0 0 1 0 1 FLNB chr3:58092600 5'GT 58092600 Upstream 6bp
chr3 58092595 58092595 1 + G C COAD 58092598 + 58092578 58092618 41 CGGGAGGCTACAACCCTGATCTGGTGAATCAGCTGCTGTGC CGGGAGGCTACAACCCTCATCTGGTGAATCAGCTGCTGTGC < 41bp 1 0.508729157192465 1 0.381053566932678 experiment 0.982541685615069 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58092598 chr3:58092595 nonsynonymous SNV 0.994 5 18 hm5C_associated_SNPs_19874 0 0 1 0 1 FLNB chr3:58092600 5'GT 58092600 Upstream 6bp
chr19 806463 806463 1 + G T COAD 806443 + 806423 806463 41 ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCG ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCT < 41bp 1 0.383823480061708 1 0.0255390107631683 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806443 chr19:806463 synonymous SNV . 0 41 hm5C_associated_SNPs_19877 0 0 1 0 2 PTBP1 chr19:806408 3'AG 806408 Downstream 56bp
chr19 806463 806463 1 + G T COAD 806443 + 806423 806463 41 ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCG ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCT < 41bp 1 0.383823480061708 1 0.0255390107631683 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806443 chr19:806463 synonymous SNV . 0 41 hm5C_associated_SNPs_19877 0 0 1 0 2 PTBP1 chr19:806556 5'GT 806556 Upstream 94bp
chr19 806463 806463 1 + G T COAD 806444 + 806424 806464 41 CGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG CGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCTG < 41bp 1 0.537348726471577 1 0.152504503726959 experiment 0.925302547056845 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806444 chr19:806463 synonymous SNV . 0 40 hm5C_associated_SNPs_19878 0 0 1 0 2 PTBP1 chr19:806408 3'AG 806408 Downstream 56bp
chr19 806463 806463 1 + G T COAD 806444 + 806424 806464 41 CGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG CGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCTG < 41bp 1 0.537348726471577 1 0.152504503726959 experiment 0.925302547056845 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806444 chr19:806463 synonymous SNV . 0 40 hm5C_associated_SNPs_19878 0 0 1 0 2 PTBP1 chr19:806556 5'GT 806556 Upstream 94bp
chr19 806463 806463 1 + G T COAD 806445 + 806425 806465 41 GTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGC GTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCTGC < 41bp 1 0.5278837487041 1 0.457901239395142 experiment 0.944232502591801 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806445 chr19:806463 synonymous SNV . 0 39 hm5C_associated_SNPs_19879 0 0 1 0 2 PTBP1 chr19:806408 3'AG 806408 Downstream 56bp
chr19 806463 806463 1 + G T COAD 806445 + 806425 806465 41 GTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGC GTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCTGC < 41bp 1 0.5278837487041 1 0.457901239395142 experiment 0.944232502591801 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806445 chr19:806463 synonymous SNV . 0 39 hm5C_associated_SNPs_19879 0 0 1 0 2 PTBP1 chr19:806556 5'GT 806556 Upstream 94bp
chr19 806463 806463 1 + G T COAD 806446 + 806426 806466 41 TCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCG TCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCTGCG < 41bp 1 0.736693062104939 1 0.379019945859909 experiment 0.526613875790121 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806446 chr19:806463 synonymous SNV . 0 38 hm5C_associated_SNPs_19880 0 0 1 0 2 PTBP1 chr19:806408 3'AG 806408 Downstream 56bp
chr19 806463 806463 1 + G T COAD 806446 + 806426 806466 41 TCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCG TCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCTGCG < 41bp 1 0.736693062104939 1 0.379019945859909 experiment 0.526613875790121 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806446 chr19:806463 synonymous SNV . 0 38 hm5C_associated_SNPs_19880 0 0 1 0 2 PTBP1 chr19:806556 5'GT 806556 Upstream 94bp
chr19 806463 806463 1 + G T COAD 806450 + 806430 806470 41 CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGG CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCTGCGGCGG < 41bp 1 0.0676208691593954 1 0.10689914226532 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806450 chr19:806463 synonymous SNV . 0 34 hm5C_associated_SNPs_19881 0 0 1 0 2 PTBP1 chr19:806408 3'AG 806408 Downstream 56bp
chr19 806463 806463 1 + G T COAD 806450 + 806430 806470 41 CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGG CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCTGCGGCGG < 41bp 1 0.0676208691593954 1 0.10689914226532 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806450 chr19:806463 synonymous SNV . 0 34 hm5C_associated_SNPs_19881 0 0 1 0 2 PTBP1 chr19:806556 5'GT 806556 Upstream 94bp
chr19 806463 806463 1 + G T COAD 806451 + 806431 806471 41 GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGGC GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCTGCGGCGGC < 41bp 1 0.205688488143172 1 0.128438472747803 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806451 chr19:806463 synonymous SNV . 0 33 hm5C_associated_SNPs_19882 0 0 1 0 2 PTBP1 chr19:806408 3'AG 806408 Downstream 56bp
chr19 806463 806463 1 + G T COAD 806451 + 806431 806471 41 GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGGC GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCTGCGGCGGC < 41bp 1 0.205688488143172 1 0.128438472747803 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806451 chr19:806463 synonymous SNV . 0 33 hm5C_associated_SNPs_19882 0 0 1 0 2 PTBP1 chr19:806556 5'GT 806556 Upstream 94bp
chr19 11123732 11123732 1 + G A COAD 11123747 + 11123727 11123767 41 ATCACGTACCTCATGGAGCACAAACGCATCAATGGGCCCTT ATCACATACCTCATGGAGCACAAACGCATCAATGGGCCCTT < 41bp 1 0.166808554655197 1 0.0679062902927399 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11123747 chr19:11123732 synonymous SNV . 0 6 hm5C_associated_SNPs_19883 0 0 1 0 1 SMARCA4 chr19:11123788 5'GT 11123788 Upstream 57bp
chr22 32498100 32498100 1 + C A COAD 32498104 + 32498084 32498124 41 GGGAGCTGCATGGAGCCCAGCAACTGTCCCACGATTATCTG GGGAGCTGCATGGAGCACAGCAACTGTCCCACGATTATCTG < 41bp 1 0.337311787067937 1 0.0918062627315521 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32498104 chr22:32498100 nonsynonymous SNV 0.946 3 17 hm5C_associated_SNPs_19885 0 0 0 0 1 SLC5A1 chr22:32498009 3'AG 32498009 Downstream 92bp
chrX 153008757 153008757 1 + G A COAD 153008774 + 153008754 153008794 41 GACGCGGGCATTGCCCTGCTCTCCATCACCCACCGGCCCTC GACACGGGCATTGCCCTGCTCTCCATCACCCACCGGCCCTC < 41bp 1 0.77668065161402 1 0.919561743736267 experiment 0.44663869677196 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153008774 chrX:153008757 nonsynonymous SNV 0.816 2 4 hm5C_associated_SNPs_19886 0 0 1 1 2 ABCD1 chrX:153008675 3'AG 153008675 Downstream 83bp
chrX 153008757 153008757 1 + G A COAD 153008774 + 153008754 153008794 41 GACGCGGGCATTGCCCTGCTCTCCATCACCCACCGGCCCTC GACACGGGCATTGCCCTGCTCTCCATCACCCACCGGCCCTC < 41bp 1 0.77668065161402 1 0.919561743736267 experiment 0.44663869677196 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153008774 chrX:153008757 nonsynonymous SNV 0.816 2 4 hm5C_associated_SNPs_19886 0 0 1 1 2 ABCD1 chrX:153008800 5'GT 153008800 Upstream 44bp
chrX 21995187 21995187 1 + C A COAD 21995205 + 21995185 21995225 41 ACCCATAGTGCGAGGAGGAGCCATCGACAGATACTGGCCCA ACACATAGTGCGAGGAGGAGCCATCGACAGATACTGGCCCA < 41bp 1 0.157176460252246 1 0.443859785795212 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMS ENSG00000102172 CDS Human protein_coding chrX:21995205 chrX:21995187 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_19887 0 0 1 0 1 SMS chrX:21995179 3'AG 21995179 Downstream 9bp
chr11 73073120 73073120 1 + G A COAD 73073111 + 73073091 73073131 41 TGTGCGGCTCCCACCCTGAACAGCTGCCCGGAGCCCTCGCC TGTGCGGCTCCCACCCTGAACAGCTGCCCAGAGCCCTCGCC < 41bp 1 0.414137933604669 1 0.383868396282196 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73073111 chr11:73073120 synonymous SNV . 0 30 hm5C_associated_SNPs_19888 0 0 1 0 1 ARHGEF17 chr11:73073085 3'AG 73073085 Downstream 36bp
chr19 10897276 10897276 1 + C A COAD 10897279 + 10897259 10897299 41 GGGAGTCGCTGCCGGCCCTACGTAGCAAACTACAGAGCCAG GGGAGTCGCTGCCGGCCATACGTAGCAAACTACAGAGCCAG < 41bp 1 0.273157928498065 1 0.244822442531586 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10897279 chr19:10897276 nonsynonymous SNV 0.115 1 18 hm5C_associated_SNPs_19889 0 0 1 0 1 DNM2 chr19:10897240 3'AG 10897240 Downstream 37bp
chr16 88780611 88780611 1 + C A COAD 88780612 + 88780592 88780632 41 AGGCTGCAGACCCAGTTCCCCTCCACTGTCAGCACTGTGTA AGGCTGCAGACCCAGTTCCACTCCACTGTCAGCACTGTGTA < 41bp 1 0.70743833382815 1 0.874043703079224 experiment 0.5851233323437 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88780612 chr16:88780611 nonsynonymous SNV 0.906 4 20 hm5C_associated_SNPs_19890 0 0 1 0 2 CTU2 chr16:88780544 3'AG 88780544 Downstream 68bp
chr16 88780611 88780611 1 + C A COAD 88780612 + 88780592 88780632 41 AGGCTGCAGACCCAGTTCCCCTCCACTGTCAGCACTGTGTA AGGCTGCAGACCCAGTTCCACTCCACTGTCAGCACTGTGTA < 41bp 1 0.70743833382815 1 0.874043703079224 experiment 0.5851233323437 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88780612 chr16:88780611 nonsynonymous SNV 0.906 4 20 hm5C_associated_SNPs_19890 0 0 1 0 2 CTU2 chr16:88780635 5'GT 88780635 Upstream 25bp
chr5 68692323 68692323 1 + T A COAD 68692324 + 68692304 68692344 41 TCATTGCCAAGGAGGAGGATCAAGTTTTCGACCCTTGCACA TCATTGCCAAGGAGGAGGAACAAGTTTTCGACCCTTGCACA < 41bp 1 0.611617820591463 1 0.413990288972855 experiment 0.776764358817075 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD17 ENSG00000152942 CDS Human protein_coding chr5:68692324 chr5:68692323 nonsynonymous SNV 1.000 0 20 hm5C_associated_SNPs_19891 0 0 1 0 2 RAD17 chr5:68692224 3'AG 68692224 Downstream 100bp
chr5 68692323 68692323 1 + T A COAD 68692324 + 68692304 68692344 41 TCATTGCCAAGGAGGAGGATCAAGTTTTCGACCCTTGCACA TCATTGCCAAGGAGGAGGAACAAGTTTTCGACCCTTGCACA < 41bp 1 0.611617820591463 1 0.413990288972855 experiment 0.776764358817075 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD17 ENSG00000152942 CDS Human protein_coding chr5:68692324 chr5:68692323 nonsynonymous SNV 1.000 0 20 hm5C_associated_SNPs_19891 0 0 1 0 2 RAD17 chr5:68692373 5'GT 68692373 Upstream 51bp
chr1 16046284 16046284 1 + A G COAD 16046286 + 16046266 16046306 41 ACTACTACAAACCTCAGTACCTGCTGGACTTTGAAGACCGC ACTACTACAAACCTCAGTGCCTGCTGGACTTTGAAGACCGC < 41bp 1 0.232330096891153 1 0.333332479000092 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16046286 chr1:16046284 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_19892 0 0 1 0 1 PLEKHM2 chr1:16046229 3'AG 16046229 Downstream 56bp
chr2 128867285 128867285 1 + T C COAD 128867287 + 128867267 128867307 41 GAAGACTTGTGAATCTGATACCCTTGAGGCTCTTCTACTGA GAAGACTTGTGAATCTGACACCCTTGAGGCTCTTCTACTGA < 41bp 1 0.0427943010891544 1 0.0876602232456207 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128867287 chr2:128867285 synonymous SNV . 0 19 hm5C_associated_SNPs_19895 0 0 1 0 2 UGGT1 chr2:128867208 3'AG 128867208 Downstream 78bp
chr2 128867285 128867285 1 + T C COAD 128867287 + 128867267 128867307 41 GAAGACTTGTGAATCTGATACCCTTGAGGCTCTTCTACTGA GAAGACTTGTGAATCTGACACCCTTGAGGCTCTTCTACTGA < 41bp 1 0.0427943010891544 1 0.0876602232456207 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128867287 chr2:128867285 synonymous SNV . 0 19 hm5C_associated_SNPs_19895 0 0 1 0 2 UGGT1 chr2:128867320 5'GT 128867320 Upstream 36bp
chrX 41075213 41075213 1 + A G COAD 41075229 + 41075209 41075249 41 CTAAAGCGATTTGACTATGACTGGGAAAGAGAATGTGCAAT CTAAGGCGATTTGACTATGACTGGGAAAGAGAATGTGCAAT < 41bp 1 0.38244337341899 1 0.124890595674515 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41075229 chrX:41075213 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_19896 0 0 1 0 1 USP9X chrX:41075152 3'AG 41075152 Downstream 62bp
chr20 57289627 57289627 1 + C G COAD 57289631 + 57289611 57289651 41 CCTAGGACCGAGACAACAGCCCCAGCTCCTGTGCTGGCCTC CCTAGGACCGAGACAAGAGCCCCAGCTCCTGTGCTGGCCTC < 41bp 1 0.416030841954214 1 0.383446782827377 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57289631 chr20:57289627 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_19897 0 0 1 0 2 NPEPL1 chr20:57289616 3'AG 57289616 Downstream 12bp
chr20 57289627 57289627 1 + C G COAD 57289631 + 57289611 57289651 41 CCTAGGACCGAGACAACAGCCCCAGCTCCTGTGCTGGCCTC CCTAGGACCGAGACAAGAGCCCCAGCTCCTGTGCTGGCCTC < 41bp 1 0.416030841954214 1 0.383446782827377 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57289631 chr20:57289627 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_19897 0 0 1 0 2 NPEPL1 chr20:57289726 5'GT 57289726 Upstream 100bp
chr13 48936984 48936984 1 + G A COAD 48936995 + 48936975 48937015 41 GTTCACCTCGAACACCCAGGCGAGGTCAGAACAGGAGTGCA GTTCACCTCAAACACCCAGGCGAGGTCAGAACAGGAGTGCA < 41bp 1 0.578528397538926 1 0.86787474155426 experiment 0.842943204922147 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RB1 ENSG00000139687 CDS Human protein_coding chr13:48936995 chr13:48936984 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_19898 0 0 0 0 1 RB1 chr13:48936951 3'AG 48936951 Downstream 34bp
chr8 37554688 37554688 1 + C T COAD 37554680 + 37554660 37554700 41 CAGCTGGACGCCAAGAAGAGCCCCTTGGCGCTGCTGGCTCA CAGCTGGACGCCAAGAAGAGCCCCTTGGTGCTGCTGGCTCA < 41bp 1 0.15763199155111 1 0.0920411050319672 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF703 ENSG00000183779 CDS Human protein_coding chr8:37554680 chr8:37554688 nonsynonymous SNV 0.997 2 29 hm5C_associated_SNPs_19899 0 0 1 0 1 ZNF703 chr8:37554663 3'AG 37554663 Downstream 26bp
chrX 48564955 48564955 1 + G A COAD 48564940 + 48564920 48564960 41 TCATAGACAACCTTGACGAGCGGCTGCCCCGCATCGCTTTC TCATAGACAACCTTGACGAGCGGCTGCCCCGCATCACTTTC < 41bp 1 0.38688798861062 1 0.180110812187195 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SUV39H1 ENSG00000101945 CDS Human protein_coding chrX:48564940 chrX:48564955 nonsynonymous SNV 0.225 4 36 hm5C_associated_SNPs_19901 0 0 1 0 1 SUV39H1 chrX:48565018 5'GT 48565018 Upstream 64bp
chr3 127323812 127323812 1 + G A COAD 127323809 + 127323789 127323829 41 GAGCGGGCCACGGAGGACGGCGAGGAGGACGAGGAGATGAT GAGCGGGCCACGGAGGACGGCGAAGAGGACGAGGAGATGAT < 41bp 1 0.423156401872171 1 0.528241515159607 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127323809 chr3:127323812 synonymous SNV . 0 24 hm5C_associated_SNPs_19903 0 0 1 0 2 MCM2 chr3:127323720 3'AG 127323720 Downstream 93bp
chr3 127323812 127323812 1 + G A COAD 127323809 + 127323789 127323829 41 GAGCGGGCCACGGAGGACGGCGAGGAGGACGAGGAGATGAT GAGCGGGCCACGGAGGACGGCGAAGAGGACGAGGAGATGAT < 41bp 1 0.423156401872171 1 0.528241515159607 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127323809 chr3:127323812 synonymous SNV . 0 24 hm5C_associated_SNPs_19903 0 0 1 0 2 MCM2 chr3:127323739 3'AG 127323739 Downstream 74bp
chr16 3707755 3707755 1 + G A COAD 3707766 + 3707746 3707786 41 CGAGGCGCCGTTGTTCCCGACTCGGCTCTTCCCTTTAACTT CGAGGCGCCATTGTTCCCGACTCGGCTCTTCCCTTTAACTT < 41bp 1 0.578005061485437 1 0.439653128385544 experiment 0.843989877029126 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707766 chr16:3707755 nonsynonymous SNV 0.002 0 10 hm5C_associated_SNPs_19905 0 0 0 0 2 DNASE1 chr16:3707721 3'AG 3707721 Downstream 35bp
chr16 3707755 3707755 1 + G A COAD 3707766 + 3707746 3707786 41 CGAGGCGCCGTTGTTCCCGACTCGGCTCTTCCCTTTAACTT CGAGGCGCCATTGTTCCCGACTCGGCTCTTCCCTTTAACTT < 41bp 1 0.578005061485437 1 0.439653128385544 experiment 0.843989877029126 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707766 chr16:3707755 nonsynonymous SNV 0.002 0 10 hm5C_associated_SNPs_19905 0 0 0 0 2 DNASE1 chr16:3707817 5'GT 3707817 Upstream 63bp
chr11 120352054 120352054 1 + C A COAD 120352068 + 120352048 120352088 41 GCAGCCCATGACAGGCATCCCTGCTGTGGAATCCACCCACC GCAGCCAATGACAGGCATCCCTGCTGTGGAATCCACCCACC < 41bp 1 0.663152699340942 1 0.145150929689407 experiment 0.673694601318117 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120352068 chr11:120352054 synonymous SNV . 0 7 hm5C_associated_SNPs_19907 0 0 1 0 1 ARHGEF12 chr11:120351969 3'AG 120351969 Downstream 86bp
chr22 45822020 45822020 1 + C T COAD 45822019 + 45821999 45822039 41 CAGGAGCAGCTGGAGCAGATCCGCCTAGTCCAGAAGCAGCA CAGGAGCAGCTGGAGCAGATCTGCCTAGTCCAGAAGCAGCA < 41bp 1 0.605040299801183 1 0.393037438392639 experiment 0.789919400397634 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIBC2 ENSG00000128408 CDS Human protein_coding chr22:45822019 chr22:45822020 nonsynonymous SNV 0.673 1 22 hm5C_associated_SNPs_19908 0 0 0 0 1 RIBC2 chr22:45822055 5'GT 45822055 Upstream 36bp
chr16 30736394 30736394 1 + T C COAD 30736401 + 30736381 30736421 41 CACCTCGTTCCCCTTTTTATCTGGTAAGTTTTACTTCCTCA CACCTCGTTCCCCCTTTTATCTGGTAAGTTTTACTTCCTCA < 41bp 1 0.398818731919249 1 0.242666363716125 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30736401 chr16:30736394 synonymous SNV . 0 14 hm5C_associated_SNPs_19909 0 0 1 0 1 SRCAP chr16:30736403 5'GT 30736403 Upstream 10bp
chr10 71154812 71154812 1 + C A COAD 71154804 + 71154784 71154824 41 CCTCTTCCGAGGGCAGATCTCTGAGACGCTGAAGACCCGGG CCTCTTCCGAGGGCAGATCTCTGAGACGATGAAGACCCGGG < 41bp 1 0.709310492838712 1 0.737887024879456 experiment 0.581379014322577 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HK1 ENSG00000156515 CDS Human protein_coding chr10:71154804 chr10:71154812 nonsynonymous SNV 0.998 5 29 hm5C_associated_SNPs_19913 0 0 1 0 1 HK1 chr10:71154861 5'GT 71154861 Upstream 50bp
chr5 118861658 118861658 1 + T G COAD 118861674 + 118861654 118861694 41 TTTCTGCCAGGCGTGTGTTACAGCAGTTTGCAGATAATGAT TTTCGGCCAGGCGTGTGTTACAGCAGTTTGCAGATAATGAT < 41bp 1 0.799244735969092 1 0.0969680845737457 experiment 0.401510528061816 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118861674 chr5:118861658 synonymous SNV . 0 5 hm5C_associated_SNPs_19914 0 0 1 0 2 HSD17B4 chr5:118861612 3'AG 118861612 Downstream 47bp
chr5 118861658 118861658 1 + T G COAD 118861674 + 118861654 118861694 41 TTTCTGCCAGGCGTGTGTTACAGCAGTTTGCAGATAATGAT TTTCGGCCAGGCGTGTGTTACAGCAGTTTGCAGATAATGAT < 41bp 1 0.799244735969092 1 0.0969680845737457 experiment 0.401510528061816 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118861674 chr5:118861658 synonymous SNV . 0 5 hm5C_associated_SNPs_19914 0 0 1 0 2 HSD17B4 chr5:118861718 5'GT 118861718 Upstream 61bp
chr19 50755952 50755952 1 + C T COAD 50755957 + 50755937 50755977 41 CCCTCTGAATGACAACGTCGCAGCCTTGCTCCACCAGAGCA CCCTCTGAATGACAATGTCGCAGCCTTGCTCCACCAGAGCA < 41bp 1 0.168500246739467 1 0.314361363649368 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50755957 chr19:50755952 synonymous SNV . 0 16 hm5C_associated_SNPs_19915 0 0 1 0 2 MYH14 chr19:50755896 3'AG 50755896 Downstream 57bp
chr19 50755952 50755952 1 + C T COAD 50755957 + 50755937 50755977 41 CCCTCTGAATGACAACGTCGCAGCCTTGCTCCACCAGAGCA CCCTCTGAATGACAATGTCGCAGCCTTGCTCCACCAGAGCA < 41bp 1 0.168500246739467 1 0.314361363649368 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50755957 chr19:50755952 synonymous SNV . 0 16 hm5C_associated_SNPs_19915 0 0 1 0 2 MYH14 chr19:50756010 5'GT 50756010 Upstream 59bp
chr5 176524306 176524306 1 + C T COAD 176524296 + 176524276 176524316 41 CGCCCCACCTCTCGCAGGTACGGGCTGATGCGTGAGTGCTG CGCCCCACCTCTCGCAGGTACGGGCTGATGTGTGAGTGCTG < 41bp 1 0.487084354410108 1 0.527297735214233 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176524296 chr5:176524306 nonsynonymous SNV 0.917 5 31 hm5C_associated_SNPs_19919 0 0 1 0 2 FGFR4 chr5:176524293 3'AG 176524293 Downstream 14bp
chr5 176524306 176524306 1 + C T COAD 176524296 + 176524276 176524316 41 CGCCCCACCTCTCGCAGGTACGGGCTGATGCGTGAGTGCTG CGCCCCACCTCTCGCAGGTACGGGCTGATGTGTGAGTGCTG < 41bp 1 0.487084354410108 1 0.527297735214233 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176524296 chr5:176524306 nonsynonymous SNV 0.917 5 31 hm5C_associated_SNPs_19919 0 0 1 0 2 FGFR4 chr5:176524398 5'GT 176524398 Upstream 93bp
chr21 45534104 45534104 1 + C T COAD 45534115 + 45534095 45534135 41 TCTGTGCTGCACCACTTCCACTTCAAGGGCTCTGTGCACAG TCTGTGCTGTACCACTTCCACTTCAAGGGCTCTGTGCACAG < 41bp 1 0.757219967683839 1 0.471945226192474 experiment 0.485560064632322 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45534115 chr21:45534104 nonsynonymous SNV 0.987 3 10 hm5C_associated_SNPs_19922 0 0 1 0 2 PWP2 chr21:45534060 3'AG 45534060 Downstream 45bp
chr21 45534104 45534104 1 + C T COAD 45534115 + 45534095 45534135 41 TCTGTGCTGCACCACTTCCACTTCAAGGGCTCTGTGCACAG TCTGTGCTGTACCACTTCCACTTCAAGGGCTCTGTGCACAG < 41bp 1 0.757219967683839 1 0.471945226192474 experiment 0.485560064632322 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45534115 chr21:45534104 nonsynonymous SNV 0.987 3 10 hm5C_associated_SNPs_19922 0 0 1 0 2 PWP2 chr21:45534159 5'GT 45534159 Upstream 56bp
chr16 67006804 67006804 1 + C T COAD 67006809 + 67006789 67006829 41 CCCAATTCAACCAGGCGGAACAATATCTGGAGATCAACCCA CCCAATTCAACCAGGTGGAACAATATCTGGAGATCAACCCA < 41bp 1 0.292985023339967 1 0.391093730926514 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:67006809 chr16:67006804 nonsynonymous SNV 0.000 0 16 hm5C_associated_SNPs_19924 0 0 1 0 1 CES3 chr16:67006757 3'AG 67006757 Downstream 48bp
chr19 45851943 45851943 1 + T C COAD 45851950 + 45851930 45851970 41 CAGACCTTCTCCATGATGCCCTGCAGATCCGGGAGCAGACG CAGACCTTCTCCACGATGCCCTGCAGATCCGGGAGCAGACG < 41bp 1 0.539620409107062 1 0.310265839099884 experiment 0.920759181785876 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLC3 ENSG00000104892 CDS Human protein_coding chr19:45851950 chr19:45851943 synonymous SNV . 0 14 hm5C_associated_SNPs_19926 0 0 0 0 2 KLC3 chr19:45851904 3'AG 45851904 Downstream 40bp
chr19 45851943 45851943 1 + T C COAD 45851950 + 45851930 45851970 41 CAGACCTTCTCCATGATGCCCTGCAGATCCGGGAGCAGACG CAGACCTTCTCCACGATGCCCTGCAGATCCGGGAGCAGACG < 41bp 1 0.539620409107062 1 0.310265839099884 experiment 0.920759181785876 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLC3 ENSG00000104892 CDS Human protein_coding chr19:45851950 chr19:45851943 synonymous SNV . 0 14 hm5C_associated_SNPs_19926 0 0 0 0 2 KLC3 chr19:45851991 5'GT 45851991 Upstream 49bp
chr2 228148563 228148563 1 + G T COAD 228148543 + 228148523 228148563 41 CATTGGCCCTCCAGGGCCCCCTGGGAACCCAGGCACACCAG CATTGGCCCTCCAGGGCCCCCTGGGAACCCAGGCACACCAT < 41bp 1 0.617836399352924 1 0.502206861972809 experiment 0.764327201294151 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228148543 chr2:228148563 nonsynonymous SNV 0.053 5 41 hm5C_associated_SNPs_19929 0 0 0 0 2 COL4A3 chr2:228148483 3'AG 228148483 Downstream 81bp
chr2 228148563 228148563 1 + G T COAD 228148543 + 228148523 228148563 41 CATTGGCCCTCCAGGGCCCCCTGGGAACCCAGGCACACCAG CATTGGCCCTCCAGGGCCCCCTGGGAACCCAGGCACACCAT < 41bp 1 0.617836399352924 1 0.502206861972809 experiment 0.764327201294151 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228148543 chr2:228148563 nonsynonymous SNV 0.053 5 41 hm5C_associated_SNPs_19929 0 0 0 0 2 COL4A3 chr2:228148572 5'GT 228148572 Upstream 10bp
chr11 66812106 66812106 1 + C A COAD 66812087 + 66812067 66812107 41 GCCGATGCTGTGGGGGAGATCCTGCTCTCCCTCAGCTACCT GCCGATGCTGTGGGGGAGATCCTGCTCTCCCTCAGCTACAT < 41bp 1 0.300266963961324 1 0.126070767641068 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SYT12 ENSG00000173227 CDS Human protein_coding chr11:66812087 chr11:66812106 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_19930 0 0 0 0 2 SYT12 chr11:66812064 3'AG 66812064 Downstream 43bp
chr11 66812106 66812106 1 + C A COAD 66812087 + 66812067 66812107 41 GCCGATGCTGTGGGGGAGATCCTGCTCTCCCTCAGCTACCT GCCGATGCTGTGGGGGAGATCCTGCTCTCCCTCAGCTACAT < 41bp 1 0.300266963961324 1 0.126070767641068 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SYT12 ENSG00000173227 CDS Human protein_coding chr11:66812087 chr11:66812106 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_19930 0 0 0 0 2 SYT12 chr11:66812184 5'GT 66812184 Upstream 79bp
chr1 109170856 109170856 1 + C T COAD 109170852 + 109170832 109170872 41 CTGTGGACATTCTAGAACATCAAGCTATGCAAGTCAGCAGT CTGTGGACATTCTAGAACATCAAGTTATGCAAGTCAGCAGT < 41bp 1 0.649945919852057 1 0.399292796850204 experiment 0.700108160295886 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM102B ENSG00000162636 CDS Human protein_coding chr1:109170852 chr1:109170856 synonymous SNV . 0 25 hm5C_associated_SNPs_19932 0 0 0 0 2 FAM102B chr1:109170789 3'AG 109170789 Downstream 68bp
chr1 109170856 109170856 1 + C T COAD 109170852 + 109170832 109170872 41 CTGTGGACATTCTAGAACATCAAGCTATGCAAGTCAGCAGT CTGTGGACATTCTAGAACATCAAGTTATGCAAGTCAGCAGT < 41bp 1 0.649945919852057 1 0.399292796850204 experiment 0.700108160295886 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM102B ENSG00000162636 CDS Human protein_coding chr1:109170852 chr1:109170856 synonymous SNV . 0 25 hm5C_associated_SNPs_19932 0 0 0 0 2 FAM102B chr1:109170884 5'GT 109170884 Upstream 29bp
chr1 40922640 40922640 1 + A G COAD 40922642 + 40922622 40922662 41 GTTAACCTTCAAGGACGTATCTGTGGACTTCACTCAGGAGG GTTAACCTTCAAGGACGTGTCTGTGGACTTCACTCAGGAGG < 41bp 1 0.616530491536937 1 0.503971338272095 experiment 0.766939016926127 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZFP69B ENSG00000187801 CDS Human protein_coding chr1:40922642 chr1:40922640 nonsynonymous SNV 0.981 0 19 hm5C_associated_SNPs_19933 0 0 0 0 1 ZFP69B chr1:40922617 3'AG 40922617 Downstream 24bp
chr9 100773658 100773658 1 + A G COAD 100773650 + 100773630 100773670 41 GATGTAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGA GATGTAGAAGGGGATGAGGACGACGATGGAGTCAGTGAGGA < 41bp 1 0.717407773079644 1 0.611680269241333 experiment 0.565184453840712 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773650 chr9:100773658 nonsynonymous SNV 0.807 3 29 hm5C_associated_SNPs_19934 0 0 1 0 1 ANP32B chr9:100773671 5'GT 100773671 Upstream 14bp
chr9 100773658 100773658 1 + A G COAD 100773653 + 100773633 100773673 41 GTAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGAGGT GTAGAAGGGGATGAGGACGACGATGGAGTCAGTGAGGAGGT < 41bp 1 0.533156427638524 1 0.436489820480347 experiment 0.933687144722951 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773653 chr9:100773658 nonsynonymous SNV 0.807 3 26 hm5C_associated_SNPs_19935 0 0 1 0 1 ANP32B chr9:100773671 5'GT 100773671 Upstream 14bp
chr9 100773658 100773658 1 + A G COAD 100773662 + 100773642 100773682 41 GATGAGGACGACGATGAAGTCAGTGAGGAGGTCAGTGCAGC GATGAGGACGACGATGGAGTCAGTGAGGAGGTCAGTGCAGC < 41bp 1 0.640920649539254 1 0.58675342798233 experiment 0.718158700921491 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773662 chr9:100773658 nonsynonymous SNV 0.807 3 17 hm5C_associated_SNPs_19936 0 0 1 0 1 ANP32B chr9:100773671 5'GT 100773671 Upstream 14bp
chr17 14095457 14095457 1 + G C COAD 14095450 + 14095430 14095470 41 TACACACCACTGAAAAGGATCAGCATTGCCAACACATGGGT TACACACCACTGAAAAGGATCAGCATTCCCAACACATGGGT < 41bp 1 0.667177309629424 1 0.394823640584946 experiment 0.665645380741151 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COX10 ENSG00000006695 CDS Human protein_coding chr17:14095450 chr17:14095457 nonsynonymous SNV 0.950 2 28 hm5C_associated_SNPs_19937 0 0 0 0 1 COX10 chr17:14095538 5'GT 14095538 Upstream 82bp
chr17 7467090 7467090 1 + C T COAD 7467100 + 7467080 7467120 41 TCCAAAGTCTCCTCTGGACCCTGACTCGGGTAAGGTGGGAA TCCAAAGTCTTCTCTGGACCCTGACTCGGGTAAGGTGGGAA < 41bp 1 0.384382681973676 1 0.0897980332374573 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SENP3 ENSG00000161956 CDS Human protein_coding chr17:7467100 chr17:7467090 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_19938 0 0 1 0 1 SENP3 chr17:7467108 5'GT 7467108 Upstream 19bp
chr2 197541360 197541360 1 + C T COAD 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTGTGCAAAAAGAGCTGTTAGAATCAACTATTGCA < 41bp 1 0.136921294804079 1 0.0728147923946381 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541360 synonymous SNV . 0 24 hm5C_associated_SNPs_19940 0 0 1 7 2 CCDC150 chr2:197541278 3'AG 197541278 Downstream 83bp
chr2 197541360 197541360 1 + C T COAD 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTGTGCAAAAAGAGCTGTTAGAATCAACTATTGCA < 41bp 1 0.136921294804079 1 0.0728147923946381 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541360 synonymous SNV . 0 24 hm5C_associated_SNPs_19940 0 0 1 7 2 CCDC150 chr2:197541455 5'GT 197541455 Upstream 96bp
chr22 31998602 31998602 1 + C T COAD 31998614 + 31998594 31998634 41 CCATCCTTCACGCAGAGCGACAGCTTCTGTATAGGTCTTGG CCATCCTTTACGCAGAGCGACAGCTTCTGTATAGGTCTTGG < 41bp 1 0.179713738592798 1 0.182030022144318 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SFI1 ENSG00000198089 CDS Human protein_coding chr22:31998614 chr22:31998602 nonsynonymous SNV 0.294 2 9 hm5C_associated_SNPs_19943 0 0 0 0 1 SFI1 chr22:31998593 3'AG 31998593 Downstream 10bp
chr16 85682273 85682273 1 + C T COAD 85682293 + 85682273 85682313 41 CCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTC TCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTC < 41bp 1 0.165704730924878 1 0.071210116147995 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85682293 chr16:85682273 synonymous SNV . 0 1 hm5C_associated_SNPs_19944 0 0 1 0 1 GSE1 chr16:85682357 5'GT 85682357 Upstream 85bp
chr2 113953763 113953763 1 + G A COAD 113953757 + 113953737 113953777 41 ACAGCCAGACCTGAGAAGGCCCAGCCGTCCCTGCCAGCTGG ACAGCCAGACCTGAGAAGGCCCAGCCATCCCTGCCAGCTGG < 41bp 1 0.111749205229063 1 0.0814476609230042 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PSD4 ENSG00000125637 CDS Human protein_coding chr2:113953757 chr2:113953763 synonymous SNV . 0 27 hm5C_associated_SNPs_19945 0 0 1 0 1 PSD4 chr2:113953724 3'AG 113953724 Downstream 40bp
chr2 27292983 27292983 1 + G T COAD 27292979 + 27292959 27292999 41 GGCTGCCTCAGGCCAGGCCCCCACGGCCCCGCTCTGCCCCT GGCTGCCTCAGGCCAGGCCCCCACTGCCCCGCTCTGCCCCT < 41bp 1 0.178449018754096 1 0.13066378235817 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27292979 chr2:27292983 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_19946 0 0 0 0 1 AGBL5 chr2:27292960 3'AG 27292960 Downstream 24bp
chr17 7814196 7814196 1 + C T COAD 7814192 + 7814172 7814212 41 CGCCGGGTCCCTACGCTACACCTCCGGGGTACGGGGCGGCC CGCCGGGTCCCTACGCTACACCTCTGGGGTACGGGGCGGCC < 41bp 1 0.14560299403189 1 0.0220582187175751 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7814192 chr17:7814196 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_19947 0 0 0 0 2 CHD3 chr17:7814165 3'AG 7814165 Downstream 32bp
chr17 7814196 7814196 1 + C T COAD 7814192 + 7814172 7814212 41 CGCCGGGTCCCTACGCTACACCTCCGGGGTACGGGGCGGCC CGCCGGGTCCCTACGCTACACCTCTGGGGTACGGGGCGGCC < 41bp 1 0.14560299403189 1 0.0220582187175751 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7814192 chr17:7814196 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_19947 0 0 0 0 2 CHD3 chr17:7814291 5'GT 7814291 Upstream 96bp
chr15 91312368 91312368 1 + T A COAD 91312388 + 91312368 91312408 41 TGCAAGTAACAGACTCATTTCTACTCTGGAGAATCTCTATG AGCAAGTAACAGACTCATTTCTACTCTGGAGAATCTCTATG < 41bp 1 0.36232804035525 1 0.0507834255695343 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91312388 chr15:91312368 stopgain 0.999 1 1 hm5C_associated_SNPs_19948 0 0 1 0 2 BLM chr15:91312363 3'AG 91312363 Downstream 6bp
chr15 91312368 91312368 1 + T A COAD 91312388 + 91312368 91312408 41 TGCAAGTAACAGACTCATTTCTACTCTGGAGAATCTCTATG AGCAAGTAACAGACTCATTTCTACTCTGGAGAATCTCTATG < 41bp 1 0.36232804035525 1 0.0507834255695343 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91312388 chr15:91312368 stopgain 0.999 1 1 hm5C_associated_SNPs_19948 0 0 1 0 2 BLM chr15:91312461 5'GT 91312461 Upstream 94bp
chr15 69003153 69003153 1 + G A COAD 69003148 + 69003128 69003168 41 CTGGAGCTGCACGGGCACAGCCGGCGTGTGGGGCTGGTCGA CTGGAGCTGCACGGGCACAGCCGGCATGTGGGGCTGGTCGA < 41bp 1 0.514733775053664 1 0.476945549249649 experiment 0.970532449892673 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CORO2B ENSG00000103647 CDS Human protein_coding chr15:69003148 chr15:69003153 nonsynonymous SNV 0.998 4 26 hm5C_associated_SNPs_19949 0 0 0 0 2 CORO2B chr15:69003071 3'AG 69003071 Downstream 83bp
chr15 69003153 69003153 1 + G A COAD 69003148 + 69003128 69003168 41 CTGGAGCTGCACGGGCACAGCCGGCGTGTGGGGCTGGTCGA CTGGAGCTGCACGGGCACAGCCGGCATGTGGGGCTGGTCGA < 41bp 1 0.514733775053664 1 0.476945549249649 experiment 0.970532449892673 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CORO2B ENSG00000103647 CDS Human protein_coding chr15:69003148 chr15:69003153 nonsynonymous SNV 0.998 4 26 hm5C_associated_SNPs_19949 0 0 0 0 2 CORO2B chr15:69003220 5'GT 69003220 Upstream 68bp
chrX 49031025 49031025 1 + C T COAD 49031034 + 49031014 49031054 41 CCTGCAGACCCCGCAGATGGCCCGGTGTAGGCGAACTTCCC CCTGCAGACCCTGCAGATGGCCCGGTGTAGGCGAACTTCCC < 41bp 1 0.524200758965498 1 0.145536541938782 experiment 0.951598482069005 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLP2 ENSG00000102007 CDS Human protein_coding chrX:49031034 chrX:49031025 synonymous SNV . 0 12 hm5C_associated_SNPs_19950 0 0 1 0 1 PLP2 chrX:49031021 3'AG 49031021 Downstream 5bp
chr11 64137816 64137816 1 + C A COAD 64137798 + 64137778 64137818 41 AAAATCCGCGAGGGGCGCTTCTCCCTTGACGGGGAGGCCTG AAAATCCGCGAGGGGCGCTTCTCCCTTGACGGGGAGGCATG < 41bp 1 0.410794913811791 1 0.37556067109108 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137798 chr11:64137816 synonymous SNV . 0 39 hm5C_associated_SNPs_19951 0 0 0 0 2 RPS6KA4 chr11:64137760 3'AG 64137760 Downstream 57bp
chr11 64137816 64137816 1 + C A COAD 64137798 + 64137778 64137818 41 AAAATCCGCGAGGGGCGCTTCTCCCTTGACGGGGAGGCCTG AAAATCCGCGAGGGGCGCTTCTCCCTTGACGGGGAGGCATG < 41bp 1 0.410794913811791 1 0.37556067109108 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137798 chr11:64137816 synonymous SNV . 0 39 hm5C_associated_SNPs_19951 0 0 0 0 2 RPS6KA4 chr11:64137856 5'GT 64137856 Upstream 41bp
chrX 107911660 107911660 1 + C T COAD 107911644 + 107911624 107911664 41 TTCACGGTTTCCCTGGTGTGCAGGGTCCCCCAGGCCCTCCT TTCACGGTTTCCCTGGTGTGCAGGGTCCCCCAGGCCTTCCT < 41bp 1 0.792884865108325 1 0.83343780040741 experiment 0.414230269783349 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107911644 chrX:107911660 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_19952 0 0 1 0 1 COL4A5 chrX:107911734 5'GT 107911734 Upstream 75bp
chr9 133511424 133511424 1 + C T COAD 133511425 + 133511405 133511445 41 TCCTCAGGCCAGCTCCCCACCGGACTACACAATGGCCTGGG TCCTCAGGCCAGCTCCCCATCGGACTACACAATGGCCTGGG < 41bp 1 0.764202136789308 1 0.879482448101044 experiment 0.471595726421384 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133511425 chr9:133511424 nonsynonymous SNV 0.971 3 20 hm5C_associated_SNPs_19953 0 0 1 0 2 FUBP3 chr9:133511386 3'AG 133511386 Downstream 39bp
chr9 133511424 133511424 1 + C T COAD 133511425 + 133511405 133511445 41 TCCTCAGGCCAGCTCCCCACCGGACTACACAATGGCCTGGG TCCTCAGGCCAGCTCCCCATCGGACTACACAATGGCCTGGG < 41bp 1 0.764202136789308 1 0.879482448101044 experiment 0.471595726421384 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133511425 chr9:133511424 nonsynonymous SNV 0.971 3 20 hm5C_associated_SNPs_19953 0 0 1 0 2 FUBP3 chr9:133511513 5'GT 133511513 Upstream 90bp
chr4 57881723 57881723 1 + G A COAD 57881714 + 57881694 57881734 41 GAGGGAGATTCGGATCTATACGGATGCAGGCCGTATTTGTA GAGGGAGATTCGGATCTATACGGATGCAGACCGTATTTGTA < 41bp 1 0.612762259552058 1 0.6893430352211 experiment 0.774475480895884 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57881714 chr4:57881723 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_19954 0 0 1 0 2 POLR2B chr4:57881668 3'AG 57881668 Downstream 56bp
chr4 57881723 57881723 1 + G A COAD 57881714 + 57881694 57881734 41 GAGGGAGATTCGGATCTATACGGATGCAGGCCGTATTTGTA GAGGGAGATTCGGATCTATACGGATGCAGACCGTATTTGTA < 41bp 1 0.612762259552058 1 0.6893430352211 experiment 0.774475480895884 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57881714 chr4:57881723 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_19954 0 0 1 0 2 POLR2B chr4:57881822 5'GT 57881822 Upstream 100bp
chr5 52204801 52204801 1 + T C COAD 52204817 + 52204797 52204837 41 CTAGTCGGAGCCCCTATGTACATGGGAACAGAGAAGGAGGA CTAGCCGGAGCCCCTATGTACATGGGAACAGAGAAGGAGGA < 41bp 1 0.361471554266018 1 0.441655337810516 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ITGA1 ENSG00000213949 CDS Human protein_coding chr5:52204817 chr5:52204801 nonsynonymous SNV 0.997 2 5 hm5C_associated_SNPs_19955 0 0 1 0 2 ITGA1 chr5:52204728 3'AG 52204728 Downstream 74bp
chr5 52204801 52204801 1 + T C COAD 52204817 + 52204797 52204837 41 CTAGTCGGAGCCCCTATGTACATGGGAACAGAGAAGGAGGA CTAGCCGGAGCCCCTATGTACATGGGAACAGAGAAGGAGGA < 41bp 1 0.361471554266018 1 0.441655337810516 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ITGA1 ENSG00000213949 CDS Human protein_coding chr5:52204817 chr5:52204801 nonsynonymous SNV 0.997 2 5 hm5C_associated_SNPs_19955 0 0 1 0 2 ITGA1 chr5:52204871 5'GT 52204871 Upstream 71bp
chr4 41621301 41621301 1 + C T COAD 41621300 + 41621280 41621320 41 GGCGGACTTCCCATGGTGAGCCGAAATCAGCAGTGCCTTTT GGCGGACTTCCCATGGTGAGCTGAAATCAGCAGTGCCTTTT < 41bp 1 0.789710629232048 1 0.287856310606003 experiment 0.420578741535904 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41621300 chr4:41621301 nonsynonymous SNV 0.215 0 22 hm5C_associated_SNPs_19956 0 0 0 0 1 LIMCH1 chr4:41621205 3'AG 41621205 Downstream 97bp
chr3 47040856 47040856 1 + C T COAD 47040844 + 47040824 47040864 41 AGAATGAGCGGCTACCTGAGCGGAGCCGCCAGCGCCTCCGG AGAATGAGCGGCTACCTGAGCGGAGCCGCCAGTGCCTCCGG < 41bp 1 0.569731947904992 1 0.895214796066284 experiment 0.860536104190016 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47040844 chr3:47040856 nonsynonymous SNV 0.728 4 33 hm5C_associated_SNPs_19964 0 0 1 0 1 NBEAL2 chr3:47040805 3'AG 47040805 Downstream 52bp
chr3 140140051 140140051 1 + A G COAD 140140054 + 140140034 140140074 41 CTACGACTGTGGACAGAAGCCCGCTGCTCAGGACACCCTGG CTACGACTGTGGACAGAGGCCCGCTGCTCAGGACACCCTGG < 41bp 1 0.175232083784449 1 0.169714838266373 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLSTN2 ENSG00000158258 CDS Human protein_coding chr3:140140054 chr3:140140051 nonsynonymous SNV 0.966 1 18 hm5C_associated_SNPs_19966 0 0 0 0 2 CLSTN2 chr3:140139967 3'AG 140139967 Downstream 85bp
chr3 140140051 140140051 1 + A G COAD 140140054 + 140140034 140140074 41 CTACGACTGTGGACAGAAGCCCGCTGCTCAGGACACCCTGG CTACGACTGTGGACAGAGGCCCGCTGCTCAGGACACCCTGG < 41bp 1 0.175232083784449 1 0.169714838266373 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLSTN2 ENSG00000158258 CDS Human protein_coding chr3:140140054 chr3:140140051 nonsynonymous SNV 0.966 1 18 hm5C_associated_SNPs_19966 0 0 0 0 2 CLSTN2 chr3:140140116 5'GT 140140116 Upstream 66bp
chr3 127786412 127786412 1 + T C COAD 127786410 + 127786390 127786430 41 ATGCTGGGCTCCTGTGCATTCTTCTCCAAAACGTGGATTGA ATGCTGGGCTCCTGTGCATTCTCCTCCAAAACGTGGATTGA < 41bp 1 0.546891646401759 1 0.60553777217865 experiment 0.906216707196481 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SEC61A1 ENSG00000058262 CDS Human protein_coding chr3:127786410 chr3:127786412 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_19967 0 0 1 0 1 SEC61A1 chr3:127786455 5'GT 127786455 Upstream 44bp
chr14 105177433 105177433 1 + C T COAD 105177427 + 105177407 105177447 41 CCCTCCCAGGGCAGCCACACCGGTGACGCCGACGGCTTCAA CCCTCCCAGGGCAGCCACACCGGTGATGCCGACGGCTTCAA < 41bp 1 0.530847043424777 1 0.48493629693985 experiment 0.938305913150445 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105177427 chr14:105177433 synonymous SNV . 0 27 hm5C_associated_SNPs_19970 0 0 1 0 2 INF2 chr14:105177416 3'AG 105177416 Downstream 18bp
chr14 105177433 105177433 1 + C T COAD 105177427 + 105177407 105177447 41 CCCTCCCAGGGCAGCCACACCGGTGACGCCGACGGCTTCAA CCCTCCCAGGGCAGCCACACCGGTGATGCCGACGGCTTCAA < 41bp 1 0.530847043424777 1 0.48493629693985 experiment 0.938305913150445 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105177427 chr14:105177433 synonymous SNV . 0 27 hm5C_associated_SNPs_19970 0 0 1 0 2 INF2 chr14:105177523 5'GT 105177523 Upstream 91bp
chr1 206653223 206653223 1 + C T COAD 206653240 + 206653220 206653260 41 GGACGTCCCCAAGTTCGTCCCCAAAGTGGACCTGCAGGCGG GGATGTCCCCAAGTTCGTCCCCAAAGTGGACCTGCAGGCGG < 41bp 1 0.440732737442841 1 0.269654452800751 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IKBKE ENSG00000143466 CDS Human other chr1:206653240 chr1:206653223 synonymous SNV . 0 4 hm5C_associated_SNPs_19971 0 0 0 0 2 IKBKE chr1:206653213 3'AG 206653213 Downstream 11bp
chr1 206653223 206653223 1 + C T COAD 206653240 + 206653220 206653260 41 GGACGTCCCCAAGTTCGTCCCCAAAGTGGACCTGCAGGCGG GGATGTCCCCAAGTTCGTCCCCAAAGTGGACCTGCAGGCGG < 41bp 1 0.440732737442841 1 0.269654452800751 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IKBKE ENSG00000143466 CDS Human other chr1:206653240 chr1:206653223 synonymous SNV . 0 4 hm5C_associated_SNPs_19971 0 0 0 0 2 IKBKE chr1:206653277 5'GT 206653277 Upstream 55bp
chr10 93605608 93605608 1 + C T COAD 93605612 + 93605592 93605632 41 AGCAGCCCAAAAGGGACGAACACAGCTTTGTGCTTTGTTGC AGCAGCCCAAAAGGGATGAACACAGCTTTGTGCTTTGTTGC < 41bp 1 0.442119271456137 1 0.355812549591064 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TNKS2 ENSG00000107854 CDS Human protein_coding chr10:93605612 chr10:93605608 stopgain 1.000 1 17 hm5C_associated_SNPs_19972 0 0 1 0 2 TNKS2 chr10:93605509 3'AG 93605509 Downstream 100bp
chr10 93605608 93605608 1 + C T COAD 93605612 + 93605592 93605632 41 AGCAGCCCAAAAGGGACGAACACAGCTTTGTGCTTTGTTGC AGCAGCCCAAAAGGGATGAACACAGCTTTGTGCTTTGTTGC < 41bp 1 0.442119271456137 1 0.355812549591064 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TNKS2 ENSG00000107854 CDS Human protein_coding chr10:93605612 chr10:93605608 stopgain 1.000 1 17 hm5C_associated_SNPs_19972 0 0 1 0 2 TNKS2 chr10:93605697 5'GT 93605697 Upstream 90bp
chr9 6498129 6498129 1 + C T COAD 6498113 + 6498093 6498133 41 GTTGAACCTGCTCCTTGGACCTCTGAAGGAATAGAACGGTC GTTGAACCTGCTCCTTGGACCTCTGAAGGAATAGAATGGTC < 41bp 1 0.361350553728597 1 0.149571895599365 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UHRF2 ENSG00000147854 CDS Human protein_coding chr9:6498113 chr9:6498129 nonsynonymous SNV 0.988 5 37 hm5C_associated_SNPs_19973 0 0 1 0 1 UHRF2 chr9:6498158 5'GT 6498158 Upstream 30bp
chr9 6498129 6498129 1 + C T COAD 6498115 + 6498095 6498135 41 TGAACCTGCTCCTTGGACCTCTGAAGGAATAGAACGGTCAA TGAACCTGCTCCTTGGACCTCTGAAGGAATAGAATGGTCAA < 41bp 1 0.715730504204079 1 0.720943987369537 experiment 0.568538991591842 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UHRF2 ENSG00000147854 CDS Human protein_coding chr9:6498115 chr9:6498129 nonsynonymous SNV 0.988 5 35 hm5C_associated_SNPs_19974 0 0 1 0 1 UHRF2 chr9:6498158 5'GT 6498158 Upstream 30bp
chr19 18254666 18254666 1 + C A COAD 18254659 + 18254639 18254679 41 CAGCCCATCTCTCCTGAATACCATCAGCCTGGACACAATGC CAGCCCATCTCTCCTGAATACCATCAGACTGGACACAATGC < 41bp 1 0.0130115307366319 1 0.0196704864501953 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18254659 chr19:18254666 nonsynonymous SNV 0.027 1 28 hm5C_associated_SNPs_19975 0 0 1 0 1 MAST3 chr19:18254573 3'AG 18254573 Downstream 94bp
chr12 68043708 68043708 1 + G A COAD 68043712 + 68043692 68043732 41 CCGGGCCAGCAACGCTGCCGCCGCAGCCCACACGGTGAGAC CCGGGCCAGCAACGCTACCGCCGCAGCCCACACGGTGAGAC < 41bp 1 0.797738237697624 1 0.217308670282364 experiment 0.404523524604752 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYRK2 ENSG00000127334 CDS Human protein_coding chr12:68043712 chr12:68043708 nonsynonymous SNV 0.934 0 17 hm5C_associated_SNPs_19976 0 0 0 0 1 DYRK2 chr12:68043725 5'GT 68043725 Upstream 18bp
chr17 57771129 57771129 1 + C T COAD 57771132 + 57771112 57771152 41 GCAGGACCCAGTGTTGCCGTCCCTCCCCAGGCACCTTTTGG GCAGGACCCAGTGTTGCTGTCCCTCCCCAGGCACCTTTTGG < 41bp 1 0.0499405840927334 1 0.111594915390015 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57771132 chr17:57771129 synonymous SNV . 0 18 hm5C_associated_SNPs_19979 0 0 1 0 1 CLTC chr17:57771089 3'AG 57771089 Downstream 41bp
chr7 44806214 44806214 1 + G C COAD 44806215 + 44806195 44806235 41 CTGCCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCC CTGCCACAGGCGTGATGGGCCCCCCCAGCATGTCTGGAGCC < 41bp 1 0.120922598145251 1 0.208457320928574 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806215 chr7:44806214 synonymous SNV . 0 20 hm5C_associated_SNPs_19980 0 0 0 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 49bp
chr7 44806214 44806214 1 + G C COAD 44806216 + 44806196 44806236 41 TGCCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCG TGCCACAGGCGTGATGGGCCCCCCCAGCATGTCTGGAGCCG < 41bp 1 0.161019445348141 1 0.163625478744507 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806216 chr7:44806214 synonymous SNV . 0 19 hm5C_associated_SNPs_19981 0 0 0 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 49bp
chr7 44806214 44806214 1 + G C COAD 44806217 + 44806197 44806237 41 GCCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGG GCCACAGGCGTGATGGGCCCCCCCAGCATGTCTGGAGCCGG < 41bp 1 0.472686086802004 1 0.405827581882477 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806217 chr7:44806214 synonymous SNV . 0 18 hm5C_associated_SNPs_19982 0 0 0 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 49bp
chr7 44806214 44806214 1 + G C COAD 44806218 + 44806198 44806238 41 CCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGGG CCACAGGCGTGATGGGCCCCCCCAGCATGTCTGGAGCCGGG < 41bp 1 0.153032429364366 1 0.149999469518661 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806218 chr7:44806214 synonymous SNV . 0 17 hm5C_associated_SNPs_19983 0 0 0 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 49bp
chr7 44806214 44806214 1 + G C COAD 44806219 + 44806199 44806239 41 CACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGGGG CACAGGCGTGATGGGCCCCCCCAGCATGTCTGGAGCCGGGG < 41bp 1 0.102130940538247 1 0.437460839748383 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806219 chr7:44806214 synonymous SNV . 0 16 hm5C_associated_SNPs_19984 0 0 0 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 49bp
chr5 33466994 33466994 1 + G A COAD 33466993 + 33466973 33467013 41 TAGGTACGACAACAATTCCACGATGCCAAATTCATGGCAGA TAGGTACGACAACAATTCCACAATGCCAAATTCATGGCAGA < 41bp 1 0.136054061231353 1 0.0644717514514923 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33466993 chr5:33466994 nonsynonymous SNV 0.991 1 22 hm5C_associated_SNPs_19985 0 0 1 0 2 TARS chr5:33466976 3'AG 33466976 Downstream 19bp
chr5 33466994 33466994 1 + G A COAD 33466993 + 33466973 33467013 41 TAGGTACGACAACAATTCCACGATGCCAAATTCATGGCAGA TAGGTACGACAACAATTCCACAATGCCAAATTCATGGCAGA < 41bp 1 0.136054061231353 1 0.0644717514514923 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33466993 chr5:33466994 nonsynonymous SNV 0.991 1 22 hm5C_associated_SNPs_19985 0 0 1 0 2 TARS chr5:33467090 5'GT 33467090 Upstream 97bp
chr19 7528751 7528751 1 + G A COAD 7528733 + 7528713 7528753 41 TCCAGAGCCTGATCTGCAGGCAGCTGGGCAGCGCCAACGGC TCCAGAGCCTGATCTGCAGGCAGCTGGGCAGCGCCAACAGC < 41bp 1 0.333272128946114 1 0.35319995880127 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7528733 chr19:7528751 nonsynonymous SNV 0.000 0 39 hm5C_associated_SNPs_19986 0 0 0 0 1 ARHGEF18 chr19:7528704 3'AG 7528704 Downstream 48bp
chr3 10320692 10320692 1 + C T COAD 10320677 + 10320657 10320697 41 CCCTCACCTTGGCTGCCTTGCGTGAGAACACCAGTCGCCTC CCCTCACCTTGGCTGCCTTGCGTGAGAACACCAGTTGCCTC < 41bp 1 0.718923611277298 1 0.794757485389709 experiment 0.562152777445404 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TATDN2 ENSG00000157014 CDS Human other chr3:10320677 chr3:10320692 nonsynonymous SNV 0.998 3 36 hm5C_associated_SNPs_19988 0 0 1 0 2 TATDN2 chr3:10320718 5'GT 10320718 Upstream 27bp
chr3 10320692 10320692 1 + C T COAD 10320677 + 10320657 10320697 41 CCCTCACCTTGGCTGCCTTGCGTGAGAACACCAGTCGCCTC CCCTCACCTTGGCTGCCTTGCGTGAGAACACCAGTTGCCTC < 41bp 1 0.718923611277298 1 0.794757485389709 experiment 0.562152777445404 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TATDN2 ENSG00000157014 CDS Human protein_coding chr3:10320677 chr3:10320692 nonsynonymous SNV 0.998 3 36 hm5C_associated_SNPs_19988 0 0 1 0 2 TATDN2 chr3:10320747 5'GT 10320747 Upstream 56bp
chr3 10320692 10320692 1 + C T COAD 10320688 + 10320668 10320708 41 GCTGCCTTGCGTGAGAACACCAGTCGCCTCTACAGTCTTTA GCTGCCTTGCGTGAGAACACCAGTTGCCTCTACAGTCTTTA < 41bp 1 0.244116505915154 1 0.0887820422649384 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TATDN2 ENSG00000157014 CDS Human other chr3:10320688 chr3:10320692 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_19989 0 0 1 0 2 TATDN2 chr3:10320718 5'GT 10320718 Upstream 27bp
chr3 10320692 10320692 1 + C T COAD 10320688 + 10320668 10320708 41 GCTGCCTTGCGTGAGAACACCAGTCGCCTCTACAGTCTTTA GCTGCCTTGCGTGAGAACACCAGTTGCCTCTACAGTCTTTA < 41bp 1 0.244116505915154 1 0.0887820422649384 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TATDN2 ENSG00000157014 CDS Human protein_coding chr3:10320688 chr3:10320692 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_19989 0 0 1 0 2 TATDN2 chr3:10320747 5'GT 10320747 Upstream 56bp
chr2 224824277 224824277 1 + A G COAD 224824275 + 224824255 224824295 41 GAGAAGCCGAACTGGGATTACCATGCAGAAATACAAGCTTT GAGAAGCCGAACTGGGATTACCGTGCAGAAATACAAGCTTT < 41bp 1 0.241934431678783 1 0.254765152931213 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224824275 chr2:224824277 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_19990 0 0 1 0 1 MRPL44 chr2:224824251 3'AG 224824251 Downstream 27bp
chr14 102476255 102476255 1 + T C COAD 102476275 + 102476255 102476295 41 TGAACCCTGGCTACGCGGGCCGGTCTAACCTTCCTGACAAC CGAACCCTGGCTACGCGGGCCGGTCTAACCTTCCTGACAAC < 41bp 1 0.0417893825950733 1 0.379304647445679 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102476275 chr14:102476255 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_19998 0 0 1 0 1 DYNC1H1 chr14:102476180 3'AG 102476180 Downstream 76bp
chrX 69353957 69353957 1 + G A COAD 69353952 + 69353932 69353972 41 CTTGGACCTCCTTGAGAAGGCTGCCGAAATGTTATCGCAGC CTTGGACCTCCTTGAGAAGGCTGCCAAAATGTTATCGCAGC < 41bp 1 0.405651149393795 1 0.186804354190826 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69353952 chrX:69353957 nonsynonymous SNV 1.000 0 26 hm5C_associated_SNPs_19999 0 0 1 0 1 IGBP1 chrX:69353985 5'GT 69353985 Upstream 29bp
chrX 69353957 69353957 1 + G A COAD 69353956 + 69353936 69353976 41 GACCTCCTTGAGAAGGCTGCCGAAATGTTATCGCAGCTCGA GACCTCCTTGAGAAGGCTGCCAAAATGTTATCGCAGCTCGA < 41bp 1 0.472984460855502 1 0.638658225536346 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69353956 chrX:69353957 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_20000 0 0 1 0 1 IGBP1 chrX:69353985 5'GT 69353985 Upstream 29bp
chrX 69353957 69353957 1 + G A COAD 69353969 + 69353949 69353989 41 AGGCTGCCGAAATGTTATCGCAGCTCGACTTGTTCAGGTAT AGGCTGCCAAAATGTTATCGCAGCTCGACTTGTTCAGGTAT < 41bp 1 0.301271798320144 1 0.731661677360535 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69353969 chrX:69353957 nonsynonymous SNV 1.000 0 9 hm5C_associated_SNPs_20001 0 0 1 0 1 IGBP1 chrX:69353985 5'GT 69353985 Upstream 29bp
chr7 142458438 142458438 1 + G A COAD 142458431 + 142458411 142458451 41 GCCCCCTTTGATGATGATGACAAGATCGTTGGGGGCTACAA GCCCCCTTTGATGATGATGACAAGATCATTGGGGGCTACAA < 41bp 1 0.67550361703951 1 0.471082925796509 experiment 0.64899276592098 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458431 chr7:142458438 nonsynonymous SNV 0.308 2 28 hm5C_associated_SNPs_20002 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 33bp
chr7 142458438 142458438 1 + G A COAD 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATGACAAGATCATTGGGGGCTACAACTGTGA < 41bp 1 0.176291319187533 1 0.0576739907264709 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458438 nonsynonymous SNV 0.308 2 22 hm5C_associated_SNPs_20003 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 33bp
chr7 142458438 142458438 1 + G A COAD 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCATTGGGGGCTACAACTGTGAGGAGAATTC < 41bp 1 0.280270419245981 1 0.432224154472351 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458438 nonsynonymous SNV 0.308 2 13 hm5C_associated_SNPs_20004 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 33bp
chr7 142458438 142458438 1 + G A COAD 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCATTGGGGGCTACAACTGTGAGGAGAATTCTGT < 41bp 1 0.150072011116548 1 0.187459796667099 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458438 nonsynonymous SNV 0.308 2 10 hm5C_associated_SNPs_20005 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 33bp
chr7 142458438 142458438 1 + G A COAD 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCATTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC < 41bp 1 0.454449056089084 1 0.368124067783356 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458438 nonsynonymous SNV 0.308 2 7 hm5C_associated_SNPs_20006 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 33bp
chr11 68177394 68177394 1 + G A COAD 68177413 + 68177393 68177433 41 CGCCTTCATGAACGGGAGCTCGGTGGAGCACGTGGTGGAGT CACCTTCATGAACGGGAGCTCGGTGGAGCACGTGGTGGAGT < 41bp 1 0.42944430955734 1 0.640528798103333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68177413 chr11:68177394 nonsynonymous SNV 0.983 4 2 hm5C_associated_SNPs_20010 0 0 0 0 1 LRP5 chr11:68177382 3'AG 68177382 Downstream 13bp
chr19 36594101 36594101 1 + G A COAD 36594096 + 36594076 36594116 41 GCTGAAGAGACCCTGGAGGCCTGGCGCCCACCACGTGAGTG GCTGAAGAGACCCTGGAGGCCTGGCACCCACCACGTGAGTG < 41bp 1 0.418180241328286 1 0.127460151910782 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36594096 chr19:36594101 nonsynonymous SNV 0.001 0 26 hm5C_associated_SNPs_20011 0 0 1 0 2 WDR62 chr19:36594058 3'AG 36594058 Downstream 44bp
chr19 36594101 36594101 1 + G A COAD 36594096 + 36594076 36594116 41 GCTGAAGAGACCCTGGAGGCCTGGCGCCCACCACGTGAGTG GCTGAAGAGACCCTGGAGGCCTGGCACCCACCACGTGAGTG < 41bp 1 0.418180241328286 1 0.127460151910782 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36594096 chr19:36594101 nonsynonymous SNV 0.001 0 26 hm5C_associated_SNPs_20011 0 0 1 0 2 WDR62 chr19:36594109 5'GT 36594109 Upstream 9bp
chr3 40499433 40499433 1 + C A COAD 40499425 + 40499405 40499445 41 GGCCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAA GGCCGGGTGGCCTATGTCTCCTTTGGACATCATGCCGGAAA < 41bp 1 0.407076707270807 1 0.0434713363647461 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL14 ENSG00000188846 CDS Human protein_coding chr3:40499425 chr3:40499433 nonsynonymous SNV 0.995 3 29 hm5C_associated_SNPs_20016 0 0 1 0 1 RPL14 chr3:40499381 3'AG 40499381 Downstream 53bp
chr9 79996932 79996932 1 + C T COAD 79996920 + 79996900 79996940 41 AGACTTCTGAAGTGGAGAGTCTGCGACCTCCTCGGTTCTTC AGACTTCTGAAGTGGAGAGTCTGCGACCTCCTTGGTTCTTC < 41bp 1 0.438889797791884 1 0.324905395507812 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VPS13A ENSG00000197969 CDS Human protein_coding chr9:79996920 chr9:79996932 nonsynonymous SNV 0.991 4 33 hm5C_associated_SNPs_20018 0 0 1 0 2 VPS13A chr9:79996892 3'AG 79996892 Downstream 41bp
chr9 79996932 79996932 1 + C T COAD 79996920 + 79996900 79996940 41 AGACTTCTGAAGTGGAGAGTCTGCGACCTCCTCGGTTCTTC AGACTTCTGAAGTGGAGAGTCTGCGACCTCCTTGGTTCTTC < 41bp 1 0.438889797791884 1 0.324905395507812 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VPS13A ENSG00000197969 CDS Human protein_coding chr9:79996920 chr9:79996932 nonsynonymous SNV 0.991 4 33 hm5C_associated_SNPs_20018 0 0 1 0 2 VPS13A chr9:79997003 5'GT 79997003 Upstream 72bp
chr3 66431205 66431205 1 - G A COAD 66431223 - 66431203 66431243 41 TGGACTGTTACTCCAGGGGACAAGCCTTCCACCCCCAGCCT TGGACTGTTACTCCAGGGGACAAGCCTTCCACCCCCAGTCT < 41bp 1 0.197798243224544 1 0.137196272611618 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66431223 chr3:66431205 nonsynonymous SNV 0.750 0 39 hm5C_associated_SNPs_20019 0 0 1 0 1 LRIG1 chr3:66431285 3'AG 66431285 Downstream 81bp
chr6 42974732 42974732 1 + C T COAD 42974749 + 42974729 42974769 41 CCACTCAGTGACCTCAAATTCAAGGAGGTGAAGCGGGCAGG CCATTCAGTGACCTCAAATTCAAGGAGGTGAAGCGGGCAGG < 41bp 1 0.758891782832681 1 0.741716265678406 experiment 0.482216434334638 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974749 chr6:42974732 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_20020 0 0 1 0 2 PPP2R5D chr6:42974649 3'AG 42974649 Downstream 84bp
chr6 42974732 42974732 1 + C T COAD 42974749 + 42974729 42974769 41 CCACTCAGTGACCTCAAATTCAAGGAGGTGAAGCGGGCAGG CCATTCAGTGACCTCAAATTCAAGGAGGTGAAGCGGGCAGG < 41bp 1 0.758891782832681 1 0.741716265678406 experiment 0.482216434334638 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974749 chr6:42974732 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_20020 0 0 1 0 2 PPP2R5D chr6:42974672 3'AG 42974672 Downstream 61bp
chr1 8030968 8030968 1 + G T COAD 8030955 + 8030935 8030975 41 TTGGTTTTCTTTTCACTAGTCTGCTGCTGTGAAGGAGATAC TTGGTTTTCTTTTCACTAGTCTGCTGCTGTGAATGAGATAC < 41bp 1 0.356485133773992 1 0.31263941526413 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PARK7 ENSG00000116288 CDS Human protein_coding chr1:8030955 chr1:8030968 nonsynonymous SNV 0.937 2 34 hm5C_associated_SNPs_20023 0 0 1 0 2 PARK7 chr1:8030954 3'AG 8030954 Downstream 15bp
chr1 8030968 8030968 1 + G T COAD 8030955 + 8030935 8030975 41 TTGGTTTTCTTTTCACTAGTCTGCTGCTGTGAAGGAGATAC TTGGTTTTCTTTTCACTAGTCTGCTGCTGTGAATGAGATAC < 41bp 1 0.356485133773992 1 0.31263941526413 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PARK7 ENSG00000116288 CDS Human protein_coding chr1:8030955 chr1:8030968 nonsynonymous SNV 0.937 2 34 hm5C_associated_SNPs_20023 0 0 1 0 2 PARK7 chr1:8031023 5'GT 8031023 Upstream 56bp
chr1 8030968 8030968 1 + G T COAD 8030961 + 8030941 8030981 41 TTCTTTTCACTAGTCTGCTGCTGTGAAGGAGATACTGAAGG TTCTTTTCACTAGTCTGCTGCTGTGAATGAGATACTGAAGG < 41bp 1 0.172802364569385 1 0.399786442518234 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PARK7 ENSG00000116288 CDS Human protein_coding chr1:8030961 chr1:8030968 nonsynonymous SNV 0.937 2 28 hm5C_associated_SNPs_20024 0 0 1 0 2 PARK7 chr1:8030954 3'AG 8030954 Downstream 15bp
chr1 8030968 8030968 1 + G T COAD 8030961 + 8030941 8030981 41 TTCTTTTCACTAGTCTGCTGCTGTGAAGGAGATACTGAAGG TTCTTTTCACTAGTCTGCTGCTGTGAATGAGATACTGAAGG < 41bp 1 0.172802364569385 1 0.399786442518234 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PARK7 ENSG00000116288 CDS Human protein_coding chr1:8030961 chr1:8030968 nonsynonymous SNV 0.937 2 28 hm5C_associated_SNPs_20024 0 0 1 0 2 PARK7 chr1:8031023 5'GT 8031023 Upstream 56bp
chr7 130021607 130021607 1 + C T COAD 130021587 + 130021567 130021607 41 CACGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGTC CACGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGTT < 41bp 1 0.638967709505607 1 0.0842543244361877 experiment 0.722064580988787 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021587 chr7:130021607 nonsynonymous SNV 0.260 0 41 hm5C_associated_SNPs_20025 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 72bp
chr7 130021607 130021607 1 + C T COAD 130021587 + 130021567 130021607 41 CACGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGTC CACGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGTT < 41bp 1 0.638967709505607 1 0.0842543244361877 experiment 0.722064580988787 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021587 chr7:130021607 nonsynonymous SNV 0.260 0 41 hm5C_associated_SNPs_20025 0 0 0 0 2 CPA1 chr7:130021704 5'GT 130021704 Upstream 98bp
chr7 130021607 130021607 1 + C T COAD 130021593 + 130021573 130021613 41 ATCAGCTATGAGACCATGATCGAGGACGTGCAGTCGCTGCT ATCAGCTATGAGACCATGATCGAGGACGTGCAGTTGCTGCT < 41bp 1 0.795520965621793 1 0.942874431610107 experiment 0.408958068756414 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021593 chr7:130021607 nonsynonymous SNV 0.260 0 35 hm5C_associated_SNPs_20026 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 72bp
chr7 130021607 130021607 1 + C T COAD 130021593 + 130021573 130021613 41 ATCAGCTATGAGACCATGATCGAGGACGTGCAGTCGCTGCT ATCAGCTATGAGACCATGATCGAGGACGTGCAGTTGCTGCT < 41bp 1 0.795520965621793 1 0.942874431610107 experiment 0.408958068756414 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021593 chr7:130021607 nonsynonymous SNV 0.260 0 35 hm5C_associated_SNPs_20026 0 0 0 0 2 CPA1 chr7:130021704 5'GT 130021704 Upstream 98bp
chr11 985555 985555 1 + C T COAD 985545 + 985525 985565 41 CCAACGCGAAGAATGCCGTGCTCTTCGAGGCCATCAGCTTA CCAACGCGAAGAATGCCGTGCTCTTCGAGGTCATCAGCTTA < 41bp 1 0.0455028880690693 1 0.05155149102211 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:985545 chr11:985555 nonsynonymous SNV 0.966 3 31 hm5C_associated_SNPs_20028 0 0 1 0 1 AP2A2 chr11:985582 5'GT 985582 Upstream 28bp
chr3 184106414 184106414 1 + A G COAD 184106407 + 184106387 184106427 41 CCCACCCCCAGCTGGGGGACCCCATGCAGGCTGATGGGCCC CCCACCCCCAGCTGGGGGACCCCATGCGGGCTGATGGGCCC < 41bp 1 0.216934628234135 1 0.242753475904465 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHRD ENSG00000090539 CDS Human protein_coding chr3:184106407 chr3:184106414 nonsynonymous SNV 0.999 3 28 hm5C_associated_SNPs_20029 0 0 1 0 1 CHRD chr3:184106375 3'AG 184106375 Downstream 40bp
chr1 168014205 168014205 1 + T C COAD 168014224 + 168014204 168014244 41 TTGATCGCTCTTGTGGGGTTCCAGAAGAATCTGCTTCATCT TCGATCGCTCTTGTGGGGTTCCAGAAGAATCTGCTTCATCT < 41bp 1 0.423883156094655 1 0.493910104036331 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DCAF6 ENSG00000143164 CDS Human protein_coding chr1:168014224 chr1:168014205 synonymous SNV . 0 2 hm5C_associated_SNPs_20030 0 0 1 0 1 DCAF6 chr1:168014138 3'AG 168014138 Downstream 68bp
chr5 154173700 154173700 1 + T C COAD 154173686 + 154173666 154173706 41 TTGACTACCAGTTTGGCTACCGAAAGTTTGATGGTGTGGAG TTGACTACCAGTTTGGCTACCGAAAGTTTGATGGCGTGGAG < 41bp 1 0.601695208774468 1 0.727991104125977 experiment 0.796609582451065 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154173686 chr5:154173700 synonymous SNV . 0 35 hm5C_associated_SNPs_20037 0 0 1 0 1 LARP1 chr5:154173660 3'AG 154173660 Downstream 41bp
chr1 145115793 145115793 1 + G A COAD 145115809 + 145115789 145115829 41 ATGCGAAGTACTTGAACATGCATTCCACTTATGCCAAACTT ATGCAAAGTACTTGAACATGCATTCCACTTATGCCAAACTT < 41bp 1 0.0446615942081931 1 0.0670027732849121 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC22B ENSG00000223380 ncRNA_exonic Human other chr1:145115809 chr1:145115793 . . 0 5 hm5C_associated_SNPs_20038 0 0 1 0 1 SEC22B chr1:145115735 3'AG 145115735 Downstream 59bp
chrX 149905124 149905124 1 + T C COAD 149905115 + 149905095 149905135 41 GTGCTTACCCAAATGCAGAACTTGTGTTCTTGGAGATCCAC GTGCTTACCCAAATGCAGAACTTGTGTTCCTGGAGATCCAC < 41bp 1 0.173912092264073 1 0.0315197706222534 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149905115 chrX:149905124 synonymous SNV . 0 30 hm5C_associated_SNPs_20039 0 0 1 0 1 MTMR1 chrX:149905067 3'AG 149905067 Downstream 58bp
chr12 132588943 132588943 1 + G A COAD 132588930 + 132588910 132588950 41 CTTGTCCCAGCAGGTCCAGACCCAGAGTCCCACGCAGCCCA CTTGTCCCAGCAGGTCCAGACCCAGAGTCCCACACAGCCCA < 41bp 1 0.206078782412945 1 0.722334325313568 experiment 1 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588930 chr12:132588943 synonymous SNV . 0 34 hm5C_associated_SNPs_20040 0 0 0 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 21bp
chr12 132588943 132588943 1 + G A COAD 132588948 + 132588928 132588968 41 GACCCAGAGTCCCACGCAGCCCAGTCCGGGGCCGGGGCAGG GACCCAGAGTCCCACACAGCCCAGTCCGGGGCCGGGGCAGG < 41bp 1 0.243580923227843 1 0.0839950144290924 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588948 chr12:132588943 synonymous SNV . 0 16 hm5C_associated_SNPs_20041 0 0 0 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 21bp
chr12 132588943 132588943 1 + G A COAD 132588949 + 132588929 132588969 41 ACCCAGAGTCCCACGCAGCCCAGTCCGGGGCCGGGGCAGGC ACCCAGAGTCCCACACAGCCCAGTCCGGGGCCGGGGCAGGC < 41bp 1 0.221534481130446 1 0.0994040668010712 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588949 chr12:132588943 synonymous SNV . 0 15 hm5C_associated_SNPs_20042 0 0 0 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 21bp
chr12 132588943 132588943 1 + G A COAD 132588953 + 132588933 132588973 41 AGAGTCCCACGCAGCCCAGTCCGGGGCCGGGGCAGGCCTTG AGAGTCCCACACAGCCCAGTCCGGGGCCGGGGCAGGCCTTG < 41bp 1 0.667925821528192 1 0.882842421531677 experiment 0.664148356943615 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588953 chr12:132588943 synonymous SNV . 0 11 hm5C_associated_SNPs_20043 0 0 0 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 21bp
chr12 132588943 132588943 1 + G A COAD 132588954 + 132588934 132588974 41 GAGTCCCACGCAGCCCAGTCCGGGGCCGGGGCAGGCCTTGC GAGTCCCACACAGCCCAGTCCGGGGCCGGGGCAGGCCTTGC < 41bp 1 0.770448425603281 1 0.876036047935486 experiment 0.459103148793438 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588954 chr12:132588943 synonymous SNV . 0 10 hm5C_associated_SNPs_20044 0 0 0 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 21bp
chr12 132588943 132588943 1 + G A COAD 132588959 + 132588939 132588979 41 CCACGCAGCCCAGTCCGGGGCCGGGGCAGGCCTTGCAGAAT CCACACAGCCCAGTCCGGGGCCGGGGCAGGCCTTGCAGAAT < 41bp 1 0.561826106632798 1 0.617883265018463 experiment 0.876347786734404 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588959 chr12:132588943 synonymous SNV . 0 5 hm5C_associated_SNPs_20045 0 0 0 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 21bp
chr12 132588943 132588943 1 + G A COAD 132588960 + 132588940 132588980 41 CACGCAGCCCAGTCCGGGGCCGGGGCAGGCCTTGCAGAATG CACACAGCCCAGTCCGGGGCCGGGGCAGGCCTTGCAGAATG < 41bp 1 0.784892725437401 1 0.816598653793335 experiment 0.430214549125198 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588960 chr12:132588943 synonymous SNV . 0 4 hm5C_associated_SNPs_20046 0 0 0 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 21bp
chr2 182785345 182785345 1 + G A COAD 182785364 + 182785344 182785384 41 CGCTGATAACTTGTCATGCCCTTCTCCATTGAATGTAATGG CACTGATAACTTGTCATGCCCTTCTCCATTGAATGTAATGG < 41bp 1 0.0492740376875939 1 0.0385544300079346 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182785364 chr2:182785345 nonsynonymous SNV 0.997 0 2 hm5C_associated_SNPs_20051 0 0 1 0 3 SSFA2 chr2:182785324 3'AG 182785324 Downstream 22bp
chr2 182785345 182785345 1 + G A COAD 182785364 + 182785344 182785384 41 CGCTGATAACTTGTCATGCCCTTCTCCATTGAATGTAATGG CACTGATAACTTGTCATGCCCTTCTCCATTGAATGTAATGG < 41bp 1 0.0492740376875939 1 0.0385544300079346 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182785364 chr2:182785345 nonsynonymous SNV 0.997 0 2 hm5C_associated_SNPs_20051 0 0 1 0 3 SSFA2 chr2:182785377 5'GT 182785377 Upstream 33bp
chr2 182785345 182785345 1 + G A COAD 182785364 + 182785344 182785384 41 CGCTGATAACTTGTCATGCCCTTCTCCATTGAATGTAATGG CACTGATAACTTGTCATGCCCTTCTCCATTGAATGTAATGG < 41bp 1 0.0492740376875939 1 0.0385544300079346 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182785364 chr2:182785345 nonsynonymous SNV 0.997 0 2 hm5C_associated_SNPs_20051 0 0 1 0 3 SSFA2 chr2:182785389 5'GT 182785389 Upstream 45bp
chr1 27088723 27088723 1 + G T COAD 27088714 + 27088694 27088734 41 GCTCAGCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA GCTCAGCCTTATCTCCGCGTCAGCCTTCCTGAGGACAGATA < 41bp 1 0.210650613557823 1 0.0427128672599792 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27088714 chr1:27088723 stopgain 0.968 1 30 hm5C_associated_SNPs_20052 0 0 1 0 2 ARID1A chr1:27088643 3'AG 27088643 Downstream 81bp
chr1 27088723 27088723 1 + G T COAD 27088714 + 27088694 27088734 41 GCTCAGCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA GCTCAGCCTTATCTCCGCGTCAGCCTTCCTGAGGACAGATA < 41bp 1 0.210650613557823 1 0.0427128672599792 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27088714 chr1:27088723 stopgain 0.968 1 30 hm5C_associated_SNPs_20052 0 0 1 0 2 ARID1A chr1:27088810 5'GT 27088810 Upstream 88bp
chrX 21995188 21995188 1 + C T COAD 21995205 + 21995185 21995225 41 ACCCATAGTGCGAGGAGGAGCCATCGACAGATACTGGCCCA ACCTATAGTGCGAGGAGGAGCCATCGACAGATACTGGCCCA < 41bp 1 0.158922938720189 1 0.402995020151138 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMS ENSG00000102172 CDS Human protein_coding chrX:21995205 chrX:21995188 synonymous SNV . 0 4 hm5C_associated_SNPs_20053 0 0 1 0 1 SMS chrX:21995179 3'AG 21995179 Downstream 10bp
chr2 167108307 167108307 1 - T A COAD 167108313 - 167108293 167108333 41 AGAAGAAGCAGAGGCTGAACCTATGAATTCCGATGAGCCAG AGAAGAAGCAGAGGCTGAACCTATGATTTCCGATGAGCCAG < 41bp 1 0.446498561866186 1 0.445526033639908 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SCN9A ENSG00000169432 CDS Human protein_coding chr2:167108313 chr2:167108307 nonsynonymous SNV 0.993 2 27 hm5C_associated_SNPs_20054 0 0 0 0 2 SCN9A chr2:167108275 5'GT 167108275 Upstream 33bp
chr2 167108307 167108307 1 - T A COAD 167108313 - 167108293 167108333 41 AGAAGAAGCAGAGGCTGAACCTATGAATTCCGATGAGCCAG AGAAGAAGCAGAGGCTGAACCTATGATTTCCGATGAGCCAG < 41bp 1 0.446498561866186 1 0.445526033639908 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SCN9A ENSG00000169432 CDS Human protein_coding chr2:167108313 chr2:167108307 nonsynonymous SNV 0.993 2 27 hm5C_associated_SNPs_20054 0 0 0 0 2 SCN9A chr2:167108395 3'AG 167108395 Downstream 89bp
chr19 50334643 50334643 1 + A T COAD 50334624 + 50334604 50334644 41 CCCAGGAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAG CCCAGGAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGTG < 41bp 1 0.236219044138439 1 0.113843023777008 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334624 chr19:50334643 synonymous SNV . 0 40 hm5C_associated_SNPs_20056 0 0 1 0 2 MED25 chr19:50334590 3'AG 50334590 Downstream 54bp
chr19 50334643 50334643 1 + A T COAD 50334624 + 50334604 50334644 41 CCCAGGAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAG CCCAGGAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGTG < 41bp 1 0.236219044138439 1 0.113843023777008 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334624 chr19:50334643 synonymous SNV . 0 40 hm5C_associated_SNPs_20056 0 0 1 0 2 MED25 chr19:50334718 5'GT 50334718 Upstream 76bp
chr19 50334643 50334643 1 + A T COAD 50334629 + 50334609 50334649 41 GAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAGCCCCA GAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGTGCCCCA < 41bp 1 0.509457399717331 1 0.482234239578247 experiment 0.981085200565339 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334629 chr19:50334643 synonymous SNV . 0 35 hm5C_associated_SNPs_20057 0 0 1 0 2 MED25 chr19:50334590 3'AG 50334590 Downstream 54bp
chr19 50334643 50334643 1 + A T COAD 50334629 + 50334609 50334649 41 GAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAGCCCCA GAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGTGCCCCA < 41bp 1 0.509457399717331 1 0.482234239578247 experiment 0.981085200565339 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334629 chr19:50334643 synonymous SNV . 0 35 hm5C_associated_SNPs_20057 0 0 1 0 2 MED25 chr19:50334718 5'GT 50334718 Upstream 76bp
chr2 181927532 181927532 1 + G A COAD 181927542 + 181927522 181927562 41 TCCTCTGGTTGGAAGCATAGCCACTCAGTATTTGACCAACA TCCTCTGGTTAGAAGCATAGCCACTCAGTATTTGACCAACA < 41bp 1 0.110717410972083 1 0.0249004662036896 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBE2E3 ENSG00000170035 CDS Human protein_coding chr2:181927542 chr2:181927532 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_20058 0 0 1 0 1 UBE2E3 chr2:181927518 3'AG 181927518 Downstream 15bp
chr2 233697641 233697641 1 + G A COAD 233697652 + 233697632 233697672 41 GCTGCGGATGGAAGAGGAGGCAGCCAGACTCCGGCATGAGG GCTGCGGATAGAAGAGGAGGCAGCCAGACTCCGGCATGAGG < 41bp 1 0.257103495264247 1 0.218017518520355 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233697652 chr2:233697641 nonsynonymous SNV 0.997 2 10 hm5C_associated_SNPs_20060 0 0 1 0 1 GIGYF2 chr2:233697567 3'AG 233697567 Downstream 75bp
chr2 233697641 233697641 1 + G A COAD 233697656 + 233697636 233697676 41 CGGATGGAAGAGGAGGCAGCCAGACTCCGGCATGAGGAAGA CGGATAGAAGAGGAGGCAGCCAGACTCCGGCATGAGGAAGA < 41bp 1 0.30702568023745 1 0.320342749357224 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233697656 chr2:233697641 nonsynonymous SNV 0.997 2 6 hm5C_associated_SNPs_20061 0 0 1 0 1 GIGYF2 chr2:233697567 3'AG 233697567 Downstream 75bp
chr2 214149285 214149285 1 + C T COAD 214149300 + 214149280 214149320 41 GCAGCCGGGGACGCGAGGGACACGGCGGACGCGGTGGCGGC GCAGCTGGGGACGCGAGGGACACGGCGGACGCGGTGGCGGC < 41bp 1 0.737854482801113 1 0.495069354772568 experiment 0.524291034397774 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPAG16 ENSG00000144451 CDS Human protein_coding chr2:214149300 chr2:214149285 synonymous SNV . 0 6 hm5C_associated_SNPs_20062 0 0 1 0 1 SPAG16 chr2:214149343 5'GT 214149343 Upstream 59bp
chr7 33014908 33014908 1 + G A COAD 33014888 + 33014868 33014908 41 GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCG GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCA < 41bp 1 0.512518409789494 1 0.779320776462555 experiment 0.974963180421011 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014888 chr7:33014908 nonsynonymous SNV 1.000 5 41 hm5C_associated_SNPs_20063 0 0 0 0 1 FKBP9 chr7:33014983 5'GT 33014983 Upstream 76bp
chr7 33014908 33014908 1 + G A COAD 33014892 + 33014872 33014912 41 AGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCGGACC AGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCAGACC < 41bp 1 0.0738345075734175 1 0.075361430644989 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014892 chr7:33014908 nonsynonymous SNV 1.000 5 37 hm5C_associated_SNPs_20064 0 0 0 0 1 FKBP9 chr7:33014983 5'GT 33014983 Upstream 76bp
chr16 78143679 78143679 1 + G A COAD 78143695 + 78143675 78143715 41 ATTTGCCATACGGATGGGAACAAGAAACTGATGAGAACGGA ATTTACCATACGGATGGGAACAAGAAACTGATGAGAACGGA < 41bp 1 0.386850363671917 1 0.539565980434418 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WWOX ENSG00000186153 CDS Human protein_coding chr16:78143695 chr16:78143679 nonsynonymous SNV 0.997 0 5 hm5C_associated_SNPs_20067 0 0 1 0 2 WWOX chr16:78143675 3'AG 78143675 Downstream 5bp
chr16 78143679 78143679 1 + G A COAD 78143695 + 78143675 78143715 41 ATTTGCCATACGGATGGGAACAAGAAACTGATGAGAACGGA ATTTACCATACGGATGGGAACAAGAAACTGATGAGAACGGA < 41bp 1 0.386850363671917 1 0.539565980434418 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WWOX ENSG00000186153 CDS Human protein_coding chr16:78143695 chr16:78143679 nonsynonymous SNV 0.997 0 5 hm5C_associated_SNPs_20067 0 0 1 0 2 WWOX chr16:78143732 5'GT 78143732 Upstream 54bp
chr1 10412707 10412707 1 + C A COAD 10412691 + 10412671 10412711 41 TTTTATCCTTTCTTTTAGGTCGTATTCGGAATAAGCCTGAG TTTTATCCTTTCTTTTAGGTCGTATTCGGAATAAGCATGAG < 41bp 1 0.0485827043081883 1 0.128809720277786 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10412691 chr1:10412707 nonsynonymous SNV 0.989 4 37 hm5C_associated_SNPs_20068 0 0 1 0 2 KIF1B chr1:10412689 3'AG 10412689 Downstream 19bp
chr1 10412707 10412707 1 + C A COAD 10412691 + 10412671 10412711 41 TTTTATCCTTTCTTTTAGGTCGTATTCGGAATAAGCCTGAG TTTTATCCTTTCTTTTAGGTCGTATTCGGAATAAGCATGAG < 41bp 1 0.0485827043081883 1 0.128809720277786 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10412691 chr1:10412707 nonsynonymous SNV 0.989 4 37 hm5C_associated_SNPs_20068 0 0 1 0 2 KIF1B chr1:10412794 5'GT 10412794 Upstream 88bp
chr15 25220542 25220542 1 + A G COAD 25220529 + 25220509 25220549 41 TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGA TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGGCTATAGA < 41bp 1 0.66043163382841 1 0.526533186435699 experiment 0.67913673234318 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25220529 chr15:25220542 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_20069 0 0 1 3 1 SNRPN chr15:25220505 3'AG 25220505 Downstream 38bp
chr19 10789837 10789837 1 + G A COAD 10789854 + 10789834 10789874 41 CTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG CTCACGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG < 41bp 1 0.0797976392194437 1 0.0793872177600861 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789854 chr19:10789837 nonsynonymous SNV 0.804 4 4 hm5C_associated_SNPs_20070 0 0 1 0 2 ILF3 chr19:10789773 3'AG 10789773 Downstream 65bp
chr19 10789837 10789837 1 + G A COAD 10789854 + 10789834 10789874 41 CTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG CTCACGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG < 41bp 1 0.0797976392194437 1 0.0793872177600861 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789854 chr19:10789837 nonsynonymous SNV 0.804 4 4 hm5C_associated_SNPs_20070 0 0 1 0 2 ILF3 chr19:10789868 5'GT 10789868 Upstream 32bp
chr19 10789837 10789837 1 + G A COAD 10789855 + 10789835 10789875 41 TCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC TCACGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC < 41bp 1 0.0352608069857691 1 0.090662956237793 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789855 chr19:10789837 nonsynonymous SNV 0.804 4 3 hm5C_associated_SNPs_20071 0 0 1 0 2 ILF3 chr19:10789773 3'AG 10789773 Downstream 65bp
chr19 10789837 10789837 1 + G A COAD 10789855 + 10789835 10789875 41 TCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC TCACGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC < 41bp 1 0.0352608069857691 1 0.090662956237793 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789855 chr19:10789837 nonsynonymous SNV 0.804 4 3 hm5C_associated_SNPs_20071 0 0 1 0 2 ILF3 chr19:10789868 5'GT 10789868 Upstream 32bp
chr8 37978473 37978473 1 + G A COAD 37978454 + 37978434 37978474 41 TTTTTCCTTTCTGCAGTGACCCTTTGTTTTCTGCTCAGCGC TTTTTCCTTTCTGCAGTGACCCTTTGTTTTCTGCTCAGCAC < 41bp 1 0.0569180394715675 1 0.0740212798118591 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ASH2L ENSG00000129691 CDS Human protein_coding chr8:37978454 chr8:37978473 nonsynonymous SNV 0.998 3 40 hm5C_associated_SNPs_20073 0 0 1 0 1 ASH2L chr8:37978450 3'AG 37978450 Downstream 24bp
chr14 39645301 39645301 1 + C T COAD 39645306 + 39645286 39645326 41 ATCCAAGCCAGATTGCTGGCCCTTTCTGGTCCTGGTGGAGG ATCCAAGCCAGATTGTTGGCCCTTTCTGGTCCTGGTGGAGG < 41bp 1 0.0264727761703018 1 0.0175952613353729 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PNN ENSG00000100941 CDS Human protein_coding chr14:39645306 chr14:39645301 synonymous SNV . 0 16 hm5C_associated_SNPs_20074 0 0 1 0 2 PNN chr14:39645282 3'AG 39645282 Downstream 20bp
chr14 39645301 39645301 1 + C T COAD 39645306 + 39645286 39645326 41 ATCCAAGCCAGATTGCTGGCCCTTTCTGGTCCTGGTGGAGG ATCCAAGCCAGATTGTTGGCCCTTTCTGGTCCTGGTGGAGG < 41bp 1 0.0264727761703018 1 0.0175952613353729 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PNN ENSG00000100941 CDS Human protein_coding chr14:39645306 chr14:39645301 synonymous SNV . 0 16 hm5C_associated_SNPs_20074 0 0 1 0 2 PNN chr14:39645353 5'GT 39645353 Upstream 53bp
chr11 125513698 125513698 1 + C T COAD 125513690 + 125513670 125513710 41 TTTGTTTTCTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTT TTTGTTTTCTTTTTTAGGGGCAAAAAGGTCCCGAGTCACTT < 41bp 1 0.361374514515325 1 0.222907096147537 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513690 chr11:125513698 nonsynonymous SNV 0.998 0 29 hm5C_associated_SNPs_20075 0 0 1 2 2 CHEK1 chr11:125513687 3'AG 125513687 Downstream 12bp
chr11 125513698 125513698 1 + C T COAD 125513690 + 125513670 125513710 41 TTTGTTTTCTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTT TTTGTTTTCTTTTTTAGGGGCAAAAAGGTCCCGAGTCACTT < 41bp 1 0.361374514515325 1 0.222907096147537 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513690 chr11:125513698 nonsynonymous SNV 0.998 0 29 hm5C_associated_SNPs_20075 0 0 1 2 2 CHEK1 chr11:125513795 5'GT 125513795 Upstream 98bp
chr11 125513698 125513698 1 + C T COAD 125513699 + 125513679 125513719 41 TTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTG TTTTTTAGGGGCAAAAAGGTCCCGAGTCACTTCAGGTGGTG < 41bp 1 0.734824226130195 1 0.396350800991058 experiment 0.53035154773961 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513699 chr11:125513698 nonsynonymous SNV 0.998 0 20 hm5C_associated_SNPs_20076 0 0 1 2 2 CHEK1 chr11:125513687 3'AG 125513687 Downstream 12bp
chr11 125513698 125513698 1 + C T COAD 125513699 + 125513679 125513719 41 TTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTG TTTTTTAGGGGCAAAAAGGTCCCGAGTCACTTCAGGTGGTG < 41bp 1 0.734824226130195 1 0.396350800991058 experiment 0.53035154773961 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513699 chr11:125513698 nonsynonymous SNV 0.998 0 20 hm5C_associated_SNPs_20076 0 0 1 2 2 CHEK1 chr11:125513795 5'GT 125513795 Upstream 98bp
chr11 125513698 125513698 1 + C T COAD 125513700 + 125513680 125513720 41 TTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGT TTTTTAGGGGCAAAAAGGTCCCGAGTCACTTCAGGTGGTGT < 41bp 1 0.115764065383215 1 0.228569030761719 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513700 chr11:125513698 nonsynonymous SNV 0.998 0 19 hm5C_associated_SNPs_20077 0 0 1 2 2 CHEK1 chr11:125513687 3'AG 125513687 Downstream 12bp
chr11 125513698 125513698 1 + C T COAD 125513700 + 125513680 125513720 41 TTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGT TTTTTAGGGGCAAAAAGGTCCCGAGTCACTTCAGGTGGTGT < 41bp 1 0.115764065383215 1 0.228569030761719 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513700 chr11:125513698 nonsynonymous SNV 0.998 0 19 hm5C_associated_SNPs_20077 0 0 1 2 2 CHEK1 chr11:125513795 5'GT 125513795 Upstream 98bp
chr11 125513698 125513698 1 + C T COAD 125513701 + 125513681 125513721 41 TTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGTG TTTTAGGGGCAAAAAGGTCCCGAGTCACTTCAGGTGGTGTG < 41bp 1 0.541165286526444 1 0.527314603328705 experiment 0.917669426947112 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513701 chr11:125513698 nonsynonymous SNV 0.998 0 18 hm5C_associated_SNPs_20078 0 0 1 2 2 CHEK1 chr11:125513687 3'AG 125513687 Downstream 12bp
chr11 125513698 125513698 1 + C T COAD 125513701 + 125513681 125513721 41 TTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGTG TTTTAGGGGCAAAAAGGTCCCGAGTCACTTCAGGTGGTGTG < 41bp 1 0.541165286526444 1 0.527314603328705 experiment 0.917669426947112 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513701 chr11:125513698 nonsynonymous SNV 0.998 0 18 hm5C_associated_SNPs_20078 0 0 1 2 2 CHEK1 chr11:125513795 5'GT 125513795 Upstream 98bp
chr19 4359976 4359976 1 + G A COAD 4359996 + 4359976 4360016 41 GGCGTCCTCAAGCAGGGGAGCTGAGCCTTCCAGGGCAGGGT AGCGTCCTCAAGCAGGGGAGCTGAGCCTTCCAGGGCAGGGT < 41bp 1 0.305890342393331 1 0.285427510738373 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MPND ENSG00000008382 CDS Human protein_coding chr19:4359996 chr19:4359976 nonsynonymous SNV 0.000 0 1 hm5C_associated_SNPs_20080 0 0 0 0 1 MPND chr19:4359913 3'AG 4359913 Downstream 64bp
chr19 45260401 45260401 1 + G A COAD 45260397 + 45260377 45260417 41 CCGCTCACCTGGCGTGCGAGCACCGCAGCCCGACCTGCCTG CCGCTCACCTGGCGTGCGAGCACCACAGCCCGACCTGCCTG < 41bp 1 0.790979434092795 1 0.6459881067276 experiment 0.41804113181441 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCL3 ENSG00000069399 CDS Human protein_coding chr19:45260397 chr19:45260401 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_20082 0 0 0 0 1 BCL3 chr19:45260478 5'GT 45260478 Upstream 78bp
chr1 100740462 100740462 1 + C A COAD 100740467 + 100740447 100740487 41 ATAAATTTAACTGAGCGTGGCTGTGTGACTAAGATATATGG ATAAATTTAACTGAGAGTGGCTGTGTGACTAAGATATATGG < 41bp 1 0.244641294180508 1 0.12459471821785 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RTCA ENSG00000137996 CDS Human protein_coding chr1:100740467 chr1:100740462 nonsynonymous SNV 0.960 2 16 hm5C_associated_SNPs_20083 0 0 1 0 2 RTCA chr1:100740380 3'AG 100740380 Downstream 83bp
chr1 100740462 100740462 1 + C A COAD 100740467 + 100740447 100740487 41 ATAAATTTAACTGAGCGTGGCTGTGTGACTAAGATATATGG ATAAATTTAACTGAGAGTGGCTGTGTGACTAAGATATATGG < 41bp 1 0.244641294180508 1 0.12459471821785 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RTCA ENSG00000137996 CDS Human protein_coding chr1:100740467 chr1:100740462 nonsynonymous SNV 0.960 2 16 hm5C_associated_SNPs_20083 0 0 1 0 2 RTCA chr1:100740521 5'GT 100740521 Upstream 60bp
chr6 42044971 42044971 1 + G T COAD 42044969 + 42044949 42044989 41 GTGAAGAAGCCCAAGATCCGCAGGAAGAAGTGAGTTGGAGG GTGAAGAAGCCCAAGATCCGCATGAAGAAGTGAGTTGGAGG < 41bp 1 0.651562720393714 1 0.325345158576965 experiment 0.696874559212572 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control|28418038;GSE74771;RNA-BisSeq;293T;Control TAF8 ENSG00000137413 CDS Human protein_coding chr6:42044969 chr6:42044971 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_20086 0 0 1 3 1 TAF8 chr6:42044977 5'GT 42044977 Upstream 7bp
chr19 17450321 17450321 1 + G A COAD 17450306 + 17450286 17450326 41 CCGTGACGTGCTGGAGACCCCAGTCGACCTGGCCGGATTTC CCGTGACGTGCTGGAGACCCCAGTCGACCTGGCCGAATTTC < 41bp 1 0.311478258190804 1 0.80468612909317 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17450306 chr19:17450321 nonsynonymous SNV 0.989 4 36 hm5C_associated_SNPs_20087 0 0 1 0 1 GTPBP3 chr19:17450243 3'AG 17450243 Downstream 79bp
chr16 50655563 50655563 1 + A G COAD 50655547 + 50655527 50655567 41 GAGAAGACTGACGGGCTGGGCAGCGGAGATGAGAAGAAGAT GAGAAGACTGACGGGCTGGGCAGCGGAGATGAGAAGGAGAT < 41bp 1 0.519550656598775 1 0.570928871631622 experiment 0.960898686802451 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NKD1 ENSG00000140807 CDS Human protein_coding chr16:50655547 chr16:50655563 nonsynonymous SNV 0.868 1 37 hm5C_associated_SNPs_20089 0 0 1 0 2 NKD1 chr16:50655513 3'AG 50655513 Downstream 51bp
chr16 50655563 50655563 1 + A G COAD 50655547 + 50655527 50655567 41 GAGAAGACTGACGGGCTGGGCAGCGGAGATGAGAAGAAGAT GAGAAGACTGACGGGCTGGGCAGCGGAGATGAGAAGGAGAT < 41bp 1 0.519550656598775 1 0.570928871631622 experiment 0.960898686802451 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NKD1 ENSG00000140807 CDS Human protein_coding chr16:50655547 chr16:50655563 nonsynonymous SNV 0.868 1 37 hm5C_associated_SNPs_20089 0 0 1 0 2 NKD1 chr16:50655619 5'GT 50655619 Upstream 57bp
chr1 62914240 62914240 1 + T C COAD 62914259 + 62914239 62914279 41 CTGCCATCATTATACTGAAGCTGAACGAAGTCTTTTGTTTG CCGCCATCATTATACTGAAGCTGAACGAAGTCTTTTGTTTG < 41bp 1 0.303607359404079 1 0.184524178504944 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control USP1 ENSG00000162607 CDS Human protein_coding chr1:62914259 chr1:62914240 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_20090 0 0 1 0 1 USP1 chr1:62914337 5'GT 62914337 Upstream 98bp
chr6 125550342 125550342 1 + G A COAD 125550344 + 125550324 125550364 41 GAGATAAAACAAAAACTCGGCATGAACCTGATGAATGAATT GAGATAAAACAAAAACTCAGCATGAACCTGATGAATGAATT < 41bp 1 0.28502503772 1 0.128740251064301 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPD52L1 ENSG00000111907 CDS Human protein_coding chr6:125550344 chr6:125550342 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_20095 0 0 1 0 2 TPD52L1 chr6:125550264 3'AG 125550264 Downstream 79bp
chr6 125550342 125550342 1 + G A COAD 125550344 + 125550324 125550364 41 GAGATAAAACAAAAACTCGGCATGAACCTGATGAATGAATT GAGATAAAACAAAAACTCAGCATGAACCTGATGAATGAATT < 41bp 1 0.28502503772 1 0.128740251064301 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPD52L1 ENSG00000111907 CDS Human protein_coding chr6:125550344 chr6:125550342 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_20095 0 0 1 0 2 TPD52L1 chr6:125550412 5'GT 125550412 Upstream 71bp
chr3 184717501 184717501 1 + A G COAD 184717491 + 184717471 184717511 41 CTTCGTTTTGCAGCTGTGGCCATTTGTATCACTCATTCTGC CTTCGTTTTGCAGCTGTGGCCATTTGTATCGCTCATTCTGC < 41bp 1 0.0337659602139439 1 0.0345844924449921 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VPS8 ENSG00000156931 CDS Human protein_coding chr3:184717491 chr3:184717501 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_20096 0 0 1 0 1 VPS8 chr3:184717484 3'AG 184717484 Downstream 18bp
chr4 3495183 3495183 1 + G A COAD 3495163 + 3495143 3495183 41 CAGGCGGCCCCCACGCGGGGCCACCCCCGGCTTTCTTTTCG CAGGCGGCCCCCACGCGGGGCCACCCCCGGCTTTCTTTTCA < 41bp 1 0.0247385978018227 1 0.0385319292545319 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOK7 ENSG00000175920 CDS Human protein_coding chr4:3495163 chr4:3495183 synonymous SNV . 0 41 hm5C_associated_SNPs_20097 0 0 1 0 1 DOK7 chr4:3495210 5'GT 3495210 Upstream 28bp
chr4 3495183 3495183 1 + G A COAD 3495164 + 3495144 3495184 41 AGGCGGCCCCCACGCGGGGCCACCCCCGGCTTTCTTTTCGG AGGCGGCCCCCACGCGGGGCCACCCCCGGCTTTCTTTTCAG < 41bp 1 0.165603168744008 1 0.141847401857376 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOK7 ENSG00000175920 CDS Human protein_coding chr4:3495164 chr4:3495183 synonymous SNV . 0 40 hm5C_associated_SNPs_20098 0 0 1 0 1 DOK7 chr4:3495210 5'GT 3495210 Upstream 28bp
chr7 45108055 45108055 1 + G T COAD 45108058 + 45108038 45108078 41 TCAGCCCAGGACCCAGGGATCTCCCCCAGCCAGAGTCTGTG TCAGCCCAGGACCCAGGTATCTCCCCCAGCCAGAGTCTGTG < 41bp 1 0.344305360054767 1 0.0766543447971344 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45108058 chr7:45108055 synonymous SNV . 0 18 hm5C_associated_SNPs_20099 0 0 0 0 1 CCM2 chr7:45108042 3'AG 45108042 Downstream 14bp
chr4 178262720 178262720 1 + C T COAD 178262712 + 178262692 178262732 41 TCAGTGCCACTGCAGAATAACTGTGTGCCGCTTTGGGGACA TCAGTGCCACTGCAGAATAACTGTGTGCTGCTTTGGGGACA < 41bp 1 0.547703094311034 1 0.0611368715763092 experiment 0.904593811377933 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178262712 chr4:178262720 nonsynonymous SNV 0.981 3 29 hm5C_associated_SNPs_20101 0 0 1 0 2 NEIL3 chr4:178262630 3'AG 178262630 Downstream 91bp
chr4 178262720 178262720 1 + C T COAD 178262712 + 178262692 178262732 41 TCAGTGCCACTGCAGAATAACTGTGTGCCGCTTTGGGGACA TCAGTGCCACTGCAGAATAACTGTGTGCTGCTTTGGGGACA < 41bp 1 0.547703094311034 1 0.0611368715763092 experiment 0.904593811377933 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178262712 chr4:178262720 nonsynonymous SNV 0.981 3 29 hm5C_associated_SNPs_20101 0 0 1 0 2 NEIL3 chr4:178262796 5'GT 178262796 Upstream 77bp
chr4 178262720 178262720 1 + C T COAD 178262719 + 178262699 178262739 41 CACTGCAGAATAACTGTGTGCCGCTTTGGGGACAATAACAG CACTGCAGAATAACTGTGTGCTGCTTTGGGGACAATAACAG < 41bp 1 0.401994781834639 1 0.226697027683258 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178262719 chr4:178262720 nonsynonymous SNV 0.981 3 22 hm5C_associated_SNPs_20102 0 0 1 0 2 NEIL3 chr4:178262630 3'AG 178262630 Downstream 91bp
chr4 178262720 178262720 1 + C T COAD 178262719 + 178262699 178262739 41 CACTGCAGAATAACTGTGTGCCGCTTTGGGGACAATAACAG CACTGCAGAATAACTGTGTGCTGCTTTGGGGACAATAACAG < 41bp 1 0.401994781834639 1 0.226697027683258 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178262719 chr4:178262720 nonsynonymous SNV 0.981 3 22 hm5C_associated_SNPs_20102 0 0 1 0 2 NEIL3 chr4:178262796 5'GT 178262796 Upstream 77bp
chr4 178262720 178262720 1 + C T COAD 178262731 + 178262711 178262751 41 ACTGTGTGCCGCTTTGGGGACAATAACAGAATGACATATTT ACTGTGTGCTGCTTTGGGGACAATAACAGAATGACATATTT < 41bp 1 0.381544393502922 1 0.197655230760574 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178262731 chr4:178262720 nonsynonymous SNV 0.981 3 10 hm5C_associated_SNPs_20103 0 0 1 0 2 NEIL3 chr4:178262630 3'AG 178262630 Downstream 91bp
chr4 178262720 178262720 1 + C T COAD 178262731 + 178262711 178262751 41 ACTGTGTGCCGCTTTGGGGACAATAACAGAATGACATATTT ACTGTGTGCTGCTTTGGGGACAATAACAGAATGACATATTT < 41bp 1 0.381544393502922 1 0.197655230760574 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178262731 chr4:178262720 nonsynonymous SNV 0.981 3 10 hm5C_associated_SNPs_20103 0 0 1 0 2 NEIL3 chr4:178262796 5'GT 178262796 Upstream 77bp
chr19 10561295 10561295 1 + G A COAD 10561299 + 10561279 10561319 41 GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA GCGGTCCCCGCTGGGCAGCCCCACCCCTGTCTGCAAGGCCA < 41bp 1 0.0462046535995386 1 0.106450408697128 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561299 chr19:10561295 nonsynonymous SNV 0.801 0 17 hm5C_associated_SNPs_20104 0 0 0 0 2 PDE4A chr19:10561279 3'AG 10561279 Downstream 17bp
chr19 10561295 10561295 1 + G A COAD 10561299 + 10561279 10561319 41 GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA GCGGTCCCCGCTGGGCAGCCCCACCCCTGTCTGCAAGGCCA < 41bp 1 0.0462046535995386 1 0.106450408697128 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561299 chr19:10561295 nonsynonymous SNV 0.801 0 17 hm5C_associated_SNPs_20104 0 0 0 0 2 PDE4A chr19:10561328 5'GT 10561328 Upstream 34bp
chr7 33014891 33014891 1 + G A COAD 33014888 + 33014868 33014908 41 GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCG GTTCAGATTCACACCTATTTCAAACCCCCGAGTTGCCCTCG < 41bp 1 0.283067605328425 1 0.41394716501236 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014888 chr7:33014891 synonymous SNV . 0 24 hm5C_associated_SNPs_20105 0 0 1 0 2 FKBP9 chr7:33014794 3'AG 33014794 Downstream 98bp
chr7 33014891 33014891 1 + G A COAD 33014888 + 33014868 33014908 41 GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCG GTTCAGATTCACACCTATTTCAAACCCCCGAGTTGCCCTCG < 41bp 1 0.283067605328425 1 0.41394716501236 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014888 chr7:33014891 synonymous SNV . 0 24 hm5C_associated_SNPs_20105 0 0 1 0 2 FKBP9 chr7:33014983 5'GT 33014983 Upstream 93bp
chr7 33014891 33014891 1 + G A COAD 33014892 + 33014872 33014912 41 AGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCGGACC AGATTCACACCTATTTCAAACCCCCGAGTTGCCCTCGGACC < 41bp 1 0.10022018041456 1 0.195621609687805 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014892 chr7:33014891 synonymous SNV . 0 20 hm5C_associated_SNPs_20106 0 0 1 0 2 FKBP9 chr7:33014794 3'AG 33014794 Downstream 98bp
chr7 33014891 33014891 1 + G A COAD 33014892 + 33014872 33014912 41 AGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCGGACC AGATTCACACCTATTTCAAACCCCCGAGTTGCCCTCGGACC < 41bp 1 0.10022018041456 1 0.195621609687805 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014892 chr7:33014891 synonymous SNV . 0 20 hm5C_associated_SNPs_20106 0 0 1 0 2 FKBP9 chr7:33014983 5'GT 33014983 Upstream 93bp
chr19 58904801 58904801 1 + G A COAD 58904813 + 58904793 58904833 41 GGCGCGCCGGGACTGTGAGACGACAGGCTGTGGATGTGTCC GGCGCGCCAGGACTGTGAGACGACAGGCTGTGGATGTGTCC < 41bp 1 0.770604671546543 1 0.729804217815399 experiment 0.458790656906915 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904813 chr19:58904801 nonsynonymous SNV 0.966 2 9 hm5C_associated_SNPs_20107 0 0 1 0 2 RPS5 chr19:58904726 3'AG 58904726 Downstream 76bp
chr19 58904801 58904801 1 + G A COAD 58904813 + 58904793 58904833 41 GGCGCGCCGGGACTGTGAGACGACAGGCTGTGGATGTGTCC GGCGCGCCAGGACTGTGAGACGACAGGCTGTGGATGTGTCC < 41bp 1 0.770604671546543 1 0.729804217815399 experiment 0.458790656906915 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904813 chr19:58904801 nonsynonymous SNV 0.966 2 9 hm5C_associated_SNPs_20107 0 0 1 0 2 RPS5 chr19:58904854 5'GT 58904854 Upstream 54bp
chr14 105959056 105959056 1 + C T COAD 105959051 + 105959031 105959071 41 TGGTGTCCAGTCAGCAGGAGCAGTGCGCCCTCCTGAGCAAG TGGTGTCCAGTCAGCAGGAGCAGTGTGCCCTCCTGAGCAAG < 41bp 1 0.360920667031728 1 0.253744125366211 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105959051 chr14:105959056 synonymous SNV . 0 26 hm5C_associated_SNPs_20111 0 0 1 0 1 C14orf80 chr14:105959071 5'GT 105959071 Upstream 16bp
chrX 100088459 100088459 1 + C T COAD 100088446 + 100088426 100088466 41 AACATGGGGGCGGTTGTCCCCCAGGGATCCAGACAGGTATG AACATGGGGGCGGTTGTCCCCCAGGGATCCAGATAGGTATG < 41bp 1 0.604565912131732 1 0.39952278137207 experiment 0.790868175736537 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100088446 chrX:100088459 stopgain 0.999 1 34 hm5C_associated_SNPs_20112 0 0 1 0 1 CSTF2 chrX:100088461 5'GT 100088461 Upstream 3bp
chr11 123989023 123989023 1 + T C COAD 123989020 + 123989000 123989040 41 CCAACCTGGGTCGAAGGCGGCAGTCACCCTGAAGTATGTGC CCAACCTGGGTCGAAGGCGGCAGCCACCCTGAAGTATGTGC < 41bp 1 0.313502829874653 1 0.44953727722168 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VWA5A ENSG00000110002 CDS Human protein_coding chr11:123989020 chr11:123989023 nonsynonymous SNV 0.857 1 24 hm5C_associated_SNPs_20113 0 0 0 0 1 VWA5A chr11:123989118 5'GT 123989118 Upstream 96bp
chr1 109811555 109811555 1 + C T COAD 109811544 + 109811524 109811564 41 CAAAGGGAACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGG CAAAGGGAACTTTGCTGGGGCCAAGCTGCCCTGCTACGAGG < 41bp 1 0.0558088918844443 1 0.0892964005470276 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811544 chr1:109811555 nonsynonymous SNV 0.997 2 32 hm5C_associated_SNPs_20116 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 54bp
chr1 109811555 109811555 1 + C T COAD 109811544 + 109811524 109811564 41 CAAAGGGAACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGG CAAAGGGAACTTTGCTGGGGCCAAGCTGCCCTGCTACGAGG < 41bp 1 0.0558088918844443 1 0.0892964005470276 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811544 chr1:109811555 nonsynonymous SNV 0.997 2 32 hm5C_associated_SNPs_20116 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 76bp
chr1 109811555 109811555 1 + C T COAD 109811552 + 109811532 109811572 41 ACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGT ACTTTGCTGGGGCCAAGCTGCCCTGCTACGAGGCCCTGCGT < 41bp 1 0.105212528405906 1 0.0899826288223267 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811552 chr1:109811555 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_20117 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 54bp
chr1 109811555 109811555 1 + C T COAD 109811552 + 109811532 109811572 41 ACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGT ACTTTGCTGGGGCCAAGCTGCCCTGCTACGAGGCCCTGCGT < 41bp 1 0.105212528405906 1 0.0899826288223267 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811552 chr1:109811555 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_20117 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 76bp
chr1 109811555 109811555 1 + C T COAD 109811553 + 109811533 109811573 41 CTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTG CTTTGCTGGGGCCAAGCTGCCCTGCTACGAGGCCCTGCGTG < 41bp 1 0.100267921796298 1 0.231831401586533 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811553 chr1:109811555 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_20118 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 54bp
chr1 109811555 109811555 1 + C T COAD 109811553 + 109811533 109811573 41 CTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTG CTTTGCTGGGGCCAAGCTGCCCTGCTACGAGGCCCTGCGTG < 41bp 1 0.100267921796298 1 0.231831401586533 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811553 chr1:109811555 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_20118 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 76bp
chr1 109811555 109811555 1 + C T COAD 109811554 + 109811534 109811574 41 TTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGG TTTGCTGGGGCCAAGCTGCCCTGCTACGAGGCCCTGCGTGG < 41bp 1 0.308997171225815 1 0.169762581586838 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811554 chr1:109811555 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_20119 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 54bp
chr1 109811555 109811555 1 + C T COAD 109811554 + 109811534 109811574 41 TTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGG TTTGCTGGGGCCAAGCTGCCCTGCTACGAGGCCCTGCGTGG < 41bp 1 0.308997171225815 1 0.169762581586838 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811554 chr1:109811555 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_20119 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 76bp
chr19 42392911 42392911 1 + C T COAD 42392901 + 42392881 42392921 41 CCCACCTCATGGCCCTCCTGCAGCACGTGGCCCTGCAGTTT CCCACCTCATGGCCCTCCTGCAGCACGTGGTCCTGCAGTTT < 41bp 1 0.50825043707905 1 0.235457986593246 experiment 0.983499125841899 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42392901 chr19:42392911 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_20120 0 0 1 0 2 ARHGEF1 chr19:42392823 3'AG 42392823 Downstream 89bp
chr19 42392911 42392911 1 + C T COAD 42392901 + 42392881 42392921 41 CCCACCTCATGGCCCTCCTGCAGCACGTGGCCCTGCAGTTT CCCACCTCATGGCCCTCCTGCAGCACGTGGTCCTGCAGTTT < 41bp 1 0.50825043707905 1 0.235457986593246 experiment 0.983499125841899 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42392901 chr19:42392911 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_20120 0 0 1 0 2 ARHGEF1 chr19:42392936 5'GT 42392936 Upstream 26bp
chr11 65824768 65824768 1 + T G COAD 65824781 + 65824761 65824801 41 GCCCCACTCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCC GCCCCACGCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCC < 41bp 1 0.415390194365648 1 0.0558830797672272 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824781 chr11:65824768 synonymous SNV . 0 8 hm5C_associated_SNPs_20121 0 0 1 0 2 SF3B2 chr11:65824737 3'AG 65824737 Downstream 32bp
chr11 65824768 65824768 1 + T G COAD 65824781 + 65824761 65824801 41 GCCCCACTCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCC GCCCCACGCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCC < 41bp 1 0.415390194365648 1 0.0558830797672272 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824781 chr11:65824768 synonymous SNV . 0 8 hm5C_associated_SNPs_20121 0 0 1 0 2 SF3B2 chr11:65824846 5'GT 65824846 Upstream 79bp
chr11 65824768 65824768 1 + T G COAD 65824782 + 65824762 65824802 41 CCCCACTCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCCC CCCCACGCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCCC < 41bp 1 0.344607770927409 1 0.145737648010254 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824782 chr11:65824768 synonymous SNV . 0 7 hm5C_associated_SNPs_20122 0 0 1 0 2 SF3B2 chr11:65824737 3'AG 65824737 Downstream 32bp
chr11 65824768 65824768 1 + T G COAD 65824782 + 65824762 65824802 41 CCCCACTCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCCC CCCCACGCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCCC < 41bp 1 0.344607770927409 1 0.145737648010254 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824782 chr11:65824768 synonymous SNV . 0 7 hm5C_associated_SNPs_20122 0 0 1 0 2 SF3B2 chr11:65824846 5'GT 65824846 Upstream 79bp
chr1 44458013 44458013 1 + C T COAD 44458016 + 44457996 44458036 41 TCTTGCGCCAGGAGCTCCGGCAGTTGCTCCAGGGTCTCCGC TCTTGCGCCAGGAGCTCTGGCAGTTGCTCCAGGGTCTCCGC < 41bp 1 0.47122466640723 1 0.404122412204742 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC24 ENSG00000159214 CDS Human protein_coding chr1:44458016 chr1:44458013 nonsynonymous SNV 0.989 1 18 hm5C_associated_SNPs_20123 0 0 1 0 2 CCDC24 chr1:44457992 3'AG 44457992 Downstream 22bp
chr1 44458013 44458013 1 + C T COAD 44458016 + 44457996 44458036 41 TCTTGCGCCAGGAGCTCCGGCAGTTGCTCCAGGGTCTCCGC TCTTGCGCCAGGAGCTCTGGCAGTTGCTCCAGGGTCTCCGC < 41bp 1 0.47122466640723 1 0.404122412204742 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC24 ENSG00000159214 CDS Human protein_coding chr1:44458016 chr1:44458013 nonsynonymous SNV 0.989 1 18 hm5C_associated_SNPs_20123 0 0 1 0 2 CCDC24 chr1:44458059 5'GT 44458059 Upstream 47bp
chr11 75279852 75279852 1 + T C COAD 75279855 + 75279835 75279875 41 CGGTCCTATACCGTGGGTGTCATGATGATGCACCGGACAGG CGGTCCTATACCGTGGGCGTCATGATGATGCACCGGACAGG < 41bp 1 0.469512019866871 1 0.127346634864807 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279855 chr11:75279852 synonymous SNV . 0 18 hm5C_associated_SNPs_20124 0 0 1 0 2 SERPINH1 chr11:75279776 3'AG 75279776 Downstream 77bp
chr11 75279852 75279852 1 + T C COAD 75279855 + 75279835 75279875 41 CGGTCCTATACCGTGGGTGTCATGATGATGCACCGGACAGG CGGTCCTATACCGTGGGCGTCATGATGATGCACCGGACAGG < 41bp 1 0.469512019866871 1 0.127346634864807 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279855 chr11:75279852 synonymous SNV . 0 18 hm5C_associated_SNPs_20124 0 0 1 0 2 SERPINH1 chr11:75279874 5'GT 75279874 Upstream 23bp
chr6 31637105 31637105 1 + A G COAD 31637092 + 31637072 31637112 41 CTGCTGAGTCTGGCTGTCTCCCAGGCCTTTCAGACATCCCA CTGCTGAGTCTGGCTGTCTCCCAGGCCTTTCAGGCATCCCA < 41bp 1 0.533231828928572 1 0.555281460285187 experiment 0.933536342142856 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CSNK2B ENSG00000204435;ENSG00000263020 CDS Human other chr6:31637092 chr6:31637105 nonsynonymous SNV 0.999 4 34 hm5C_associated_SNPs_20125 0 0 1 0 1 CSNK2B chr6:31637096 3'AG 31637096 Downstream 10bp
chr11 68204387 68204387 1 + C T COAD 68204395 + 68204375 68204415 41 AGTTCCGGTGTGCGAGCGGCCAGTGTGTCCTCATCAAACAG AGTTCCGGTGTGTGAGCGGCCAGTGTGTCCTCATCAAACAG < 41bp 1 0.386269423243584 1 0.384737610816956 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204395 chr11:68204387 nonsynonymous SNV 0.961 1 13 hm5C_associated_SNPs_20126 0 0 0 0 2 LRP5 chr11:68204357 3'AG 68204357 Downstream 31bp
chr11 68204387 68204387 1 + C T COAD 68204395 + 68204375 68204415 41 AGTTCCGGTGTGCGAGCGGCCAGTGTGTCCTCATCAAACAG AGTTCCGGTGTGTGAGCGGCCAGTGTGTCCTCATCAAACAG < 41bp 1 0.386269423243584 1 0.384737610816956 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204395 chr11:68204387 nonsynonymous SNV 0.961 1 13 hm5C_associated_SNPs_20126 0 0 0 0 2 LRP5 chr11:68204467 5'GT 68204467 Upstream 81bp
chr19 50002830 50002830 1 + C T COAD 50002815 + 50002795 50002835 41 CAGTGGGCGAGTGCCGGCCTCTGAGCAAGACAGTGCGCTTC CAGTGGGCGAGTGCCGGCCTCTGAGCAAGACAGTGTGCTTC < 41bp 1 0.793838942402911 1 0.525702059268951 experiment 0.412322115194177 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS11 ENSG00000142534 CDS Human protein_coding chr19:50002815 chr19:50002830 nonsynonymous SNV 0.997 2 36 hm5C_associated_SNPs_20127 0 0 1 0 1 RPS11 chr19:50002769 3'AG 50002769 Downstream 62bp
chr10 94822668 94822668 1 + C T COAD 94822648 + 94822628 94822668 41 CGCGCATCCTGCTGGGGTTGCGGCTGGACGAGGCGCAGTGC CGCGCATCCTGCTGGGGTTGCGGCTGGACGAGGCGCAGTGT < 41bp 1 0.649606609114018 1 0.458012402057648 experiment 0.700786781771964 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94822648 chr10:94822668 synonymous SNV . 0 41 hm5C_associated_SNPs_20128 0 0 0 0 1 CYP26C1 chr10:94822752 5'GT 94822752 Upstream 85bp
chr10 94822668 94822668 1 + C T COAD 94822661 + 94822641 94822681 41 GGGGTTGCGGCTGGACGAGGCGCAGTGCGCCACGCTGGCCC GGGGTTGCGGCTGGACGAGGCGCAGTGTGCCACGCTGGCCC < 41bp 1 0.710881577168022 1 0.51695054769516 experiment 0.578236845663956 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94822661 chr10:94822668 synonymous SNV . 0 28 hm5C_associated_SNPs_20129 0 0 0 0 1 CYP26C1 chr10:94822752 5'GT 94822752 Upstream 85bp
chr10 94822668 94822668 1 + C T COAD 94822663 + 94822643 94822683 41 GGTTGCGGCTGGACGAGGCGCAGTGCGCCACGCTGGCCCGG GGTTGCGGCTGGACGAGGCGCAGTGTGCCACGCTGGCCCGG < 41bp 1 0.759265776568234 1 0.656604290008545 experiment 0.481468446863531 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94822663 chr10:94822668 synonymous SNV . 0 26 hm5C_associated_SNPs_20130 0 0 0 0 1 CYP26C1 chr10:94822752 5'GT 94822752 Upstream 85bp
chrX 152770762 152770762 1 + T C COAD 152770746 + 152770726 152770766 41 CTGACACCACGCTGCTGGACCTGCAGAACAACGACATCTCC CTGACACCACGCTGCTGGACCTGCAGAACAACGACACCTCC < 41bp 1 0.695450233787387 1 0.473468989133835 experiment 0.609099532425225 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BGN ENSG00000182492 CDS Human protein_coding chrX:152770746 chrX:152770762 nonsynonymous SNV 0.675 4 37 hm5C_associated_SNPs_20134 0 0 0 0 2 BGN chrX:152770696 3'AG 152770696 Downstream 67bp
chrX 152770762 152770762 1 + T C COAD 152770746 + 152770726 152770766 41 CTGACACCACGCTGCTGGACCTGCAGAACAACGACATCTCC CTGACACCACGCTGCTGGACCTGCAGAACAACGACACCTCC < 41bp 1 0.695450233787387 1 0.473468989133835 experiment 0.609099532425225 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BGN ENSG00000182492 CDS Human protein_coding chrX:152770746 chrX:152770762 nonsynonymous SNV 0.675 4 37 hm5C_associated_SNPs_20134 0 0 0 0 2 BGN chrX:152770808 5'GT 152770808 Upstream 47bp
chr6 147635041 147635041 1 + C T COAD 147635039 + 147635019 147635059 41 GATATCCTATATTTGAAAATCCCTACCCTTTGAGTATACAT GATATCCTATATTTGAAAATCCTTACCCTTTGAGTATACAT < 41bp 1 0.025806190846426 1 0.0763802528381348 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP5 ENSG00000164506 CDS Human protein_coding chr6:147635039 chr6:147635041 synonymous SNV . 0 23 hm5C_associated_SNPs_20136 0 0 1 0 1 STXBP5 chr6:147635020 3'AG 147635020 Downstream 22bp
chr10 118314737 118314737 1 + C T COAD 118314721 + 118314701 118314741 41 GCAGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATT GCAGAACCTTGCTTTCAGGGCACACCTGAATTAGTCTGATT < 41bp 1 0.231574197459371 1 0.0612398982048035 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314721 chr10:118314737 stopgain 0.993 1 37 hm5C_associated_SNPs_20137 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 73bp
chr10 118314737 118314737 1 + C T COAD 118314723 + 118314703 118314743 41 AGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGG AGAACCTTGCTTTCAGGGCACACCTGAATTAGTCTGATTGG < 41bp 1 0.458665353941323 1 0.0710181295871735 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314723 chr10:118314737 stopgain 0.993 1 35 hm5C_associated_SNPs_20138 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 73bp
chr10 118314737 118314737 1 + C T COAD 118314725 + 118314705 118314745 41 AACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGAC AACCTTGCTTTCAGGGCACACCTGAATTAGTCTGATTGGAC < 41bp 1 0.251900175645672 1 0.184662699699402 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314725 chr10:118314737 stopgain 0.993 1 33 hm5C_associated_SNPs_20139 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 73bp
chr10 118314737 118314737 1 + C T COAD 118314726 + 118314706 118314746 41 ACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGACC ACCTTGCTTTCAGGGCACACCTGAATTAGTCTGATTGGACC < 41bp 1 0.734167180769188 1 0.733257532119751 experiment 0.531665638461625 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314726 chr10:118314737 stopgain 0.993 1 32 hm5C_associated_SNPs_20140 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 73bp
chr10 118314737 118314737 1 + C T COAD 118314736 + 118314716 118314756 41 CAGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGC CAGGGCACACCTGAATTAGTCTGATTGGACCCCAGCGATGC < 41bp 1 0.635927955128509 1 0.2503562271595 experiment 0.728144089742982 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314736 chr10:118314737 stopgain 0.993 1 22 hm5C_associated_SNPs_20141 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 73bp
chr10 118314737 118314737 1 + C T COAD 118314745 + 118314725 118314765 41 CCTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGT CCTGAATTAGTCTGATTGGACCCCAGCGATGCCAAATTTGT < 41bp 1 0.516559346130805 1 0.0908315181732178 experiment 0.966881307738389 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314745 chr10:118314737 stopgain 0.993 1 13 hm5C_associated_SNPs_20142 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 73bp
chr10 118314737 118314737 1 + C T COAD 118314746 + 118314726 118314766 41 CTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTG CTGAATTAGTCTGATTGGACCCCAGCGATGCCAAATTTGTG < 41bp 1 0.129352519341746 1 0.189301609992981 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314746 chr10:118314737 stopgain 0.993 1 12 hm5C_associated_SNPs_20143 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 73bp
chr10 118314737 118314737 1 + C T COAD 118314747 + 118314727 118314767 41 TGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGG TGAATTAGTCTGATTGGACCCCAGCGATGCCAAATTTGTGG < 41bp 1 0.30352049788328 1 0.239408224821091 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314747 chr10:118314737 stopgain 0.993 1 11 hm5C_associated_SNPs_20144 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 73bp
chr10 118314737 118314737 1 + C T COAD 118314748 + 118314728 118314768 41 GAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGA GAATTAGTCTGATTGGACCCCAGCGATGCCAAATTTGTGGA < 41bp 1 0.702859595579087 1 0.238926231861115 experiment 0.594280808841825 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314748 chr10:118314737 stopgain 0.993 1 10 hm5C_associated_SNPs_20145 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 73bp
chr10 118314737 118314737 1 + C T COAD 118314751 + 118314731 118314771 41 TTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGATGT TTAGTCTGATTGGACCCCAGCGATGCCAAATTTGTGGATGT < 41bp 1 0.282685771450206 1 0.120546668767929 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314751 chr10:118314737 stopgain 0.993 1 7 hm5C_associated_SNPs_20146 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 73bp
chr10 118314737 118314737 1 + C T COAD 118314756 + 118314736 118314776 41 CCGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTC CTGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTC < 41bp 1 0.321077228458256 1 0.0481625199317932 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314756 chr10:118314737 stopgain 0.993 1 2 hm5C_associated_SNPs_20147 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 73bp
chr10 118314737 118314737 1 + C T COAD 118314757 + 118314737 118314777 41 CGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTCA TGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTCA < 41bp 1 0.405699278533519 1 0.247578114271164 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314757 chr10:118314737 stopgain 0.993 1 1 hm5C_associated_SNPs_20148 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 73bp
chr12 110032874 110032874 1 + C T COAD 110032880 + 110032860 110032900 41 CTGAATGCCCTCGGCGTGGGCCACGCCTCTCTGGACCAGCT CTGAATGCCCTCGGTGTGGGCCACGCCTCTCTGGACCAGCT < 41bp 1 0.185917716503921 1 0.107460975646973 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MVK ENSG00000110921 CDS Human protein_coding chr12:110032880 chr12:110032874 synonymous SNV . 0 15 hm5C_associated_SNPs_20149 0 0 1 0 1 MVK chr12:110032833 3'AG 110032833 Downstream 42bp
chr7 5338891 5338891 1 + G A COAD 5338900 + 5338880 5338920 41 TGCACCGCTACGTGGTGGCGCGGGTGATCTGGGCCGACATG TGCACCGCTACATGGTGGCGCGGGTGATCTGGGCCGACATG < 41bp 1 0.490616217932603 1 0.298700273036957 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5338900 chr7:5338891 nonsynonymous SNV 0.941 1 12 hm5C_associated_SNPs_20150 0 0 0 0 1 SLC29A4 chr7:5338871 3'AG 5338871 Downstream 21bp
chr11 13399894 13399894 1 + G T COAD 13399900 + 13399880 13399920 41 GTAGGTGGCCCAAAGAGGACCCACCCCACTGTTCCAGGGAT GTAGGTGGCCCAAATAGGACCCACCCCACTGTTCCAGGGAT < 41bp 1 0.088800568471209 1 0.120292842388153 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARNTL ENSG00000133794 CDS Human protein_coding chr11:13399900 chr11:13399894 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_20151 0 0 1 0 1 ARNTL chr11:13399884 3'AG 13399884 Downstream 11bp
chr4 6596420 6596420 1 + C T COAD 6596403 + 6596383 6596423 41 CTACTTCCGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG CTACTTCCGTGCCCTGCACGCTCTCAATGTCACCTGGTGTG < 41bp 1 0.14380516840654 1 0.0302923619747162 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6596403 chr4:6596420 nonsynonymous SNV 0.016 1 38 hm5C_associated_SNPs_20153 0 0 1 0 2 MAN2B2 chr4:6596348 3'AG 6596348 Downstream 73bp
chr4 6596420 6596420 1 + C T COAD 6596403 + 6596383 6596423 41 CTACTTCCGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG CTACTTCCGTGCCCTGCACGCTCTCAATGTCACCTGGTGTG < 41bp 1 0.14380516840654 1 0.0302923619747162 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6596403 chr4:6596420 nonsynonymous SNV 0.016 1 38 hm5C_associated_SNPs_20153 0 0 1 0 2 MAN2B2 chr4:6596459 5'GT 6596459 Upstream 40bp
chr11 6414487 6414487 1 + G A COAD 6414500 + 6414480 6414520 41 GGTCTCCGCCTCATCTCTCTCAATATGAATTTTTGTTCCCG GGTCTCCACCTCATCTCTCTCAATATGAATTTTTGTTCCCG < 41bp 1 0.424806203771086 1 0.647922933101654 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6414500 chr11:6414487 nonsynonymous SNV 1.000 5 8 hm5C_associated_SNPs_20154 0 0 1 1 1 SMPD1 chr11:6414446 3'AG 6414446 Downstream 42bp
chr16 675983 675983 1 + G A COAD 675974 + 675954 675994 41 AGCGGCAGGTCCCGACGGAGCAGGCCCGCGCGTACGCAGAG AGCGGCAGGTCCCGACGGAGCAGGCCCGCACGTACGCAGAG < 41bp 1 0.571053108486026 1 0.781880855560303 experiment 0.857893783027947 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675974 chr16:675983 nonsynonymous SNV 0.002 1 30 hm5C_associated_SNPs_20155 0 0 0 0 2 RAB40C chr16:675899 3'AG 675899 Downstream 85bp
chr16 675983 675983 1 + G A COAD 675974 + 675954 675994 41 AGCGGCAGGTCCCGACGGAGCAGGCCCGCGCGTACGCAGAG AGCGGCAGGTCCCGACGGAGCAGGCCCGCACGTACGCAGAG < 41bp 1 0.571053108486026 1 0.781880855560303 experiment 0.857893783027947 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675974 chr16:675983 nonsynonymous SNV 0.002 1 30 hm5C_associated_SNPs_20155 0 0 0 0 2 RAB40C chr16:675956 3'AG 675956 Downstream 28bp
chr16 22335865 22335865 1 + C A COAD 22335864 + 22335844 22335884 41 GGACTTCCTGGAGCACATGGCCGTGGTGAGGATCAACAAAG GGACTTCCTGGAGCACATGGCAGTGGTGAGGATCAACAAAG < 41bp 1 0.530980105436354 1 0.321810364723206 experiment 0.938039789127292 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22335864 chr16:22335865 synonymous SNV . 0 22 hm5C_associated_SNPs_20158 0 0 1 0 1 POLR3E chr16:22335824 3'AG 22335824 Downstream 42bp
chr19 54969678 54969678 1 + G A COAD 54969680 + 54969660 54969700 41 GATCGGGAGCGCAAGGTCGCCCTCAAGGCCATGATCAAAAC GATCGGGAGCGCAAGGTCACCCTCAAGGCCATGATCAAAAC < 41bp 1 0.161402812235213 1 0.151391625404358 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54969680 chr19:54969678 nonsynonymous SNV 0.998 3 19 hm5C_associated_SNPs_20159 0 0 1 0 1 LENG8 chr19:54969700 5'GT 54969700 Upstream 23bp
chr19 36370320 36370320 1 + C T COAD 36370340 + 36370320 36370360 41 CGCTTCCTGGAGGAACGACCCTGACCCGGCCCCCTTCACCC TGCTTCCTGGAGGAACGACCCTGACCCGGCCCCCTTCACCC < 41bp 1 0.437686839615756 1 0.0586024820804596 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APLP1 ENSG00000105290 CDS Human protein_coding chr19:36370340 chr19:36370320 nonsynonymous SNV 1.000 5 1 hm5C_associated_SNPs_20162 0 0 1 0 1 APLP1 chr19:36370245 3'AG 36370245 Downstream 76bp
chr2 127453576 127453576 1 + G A COAD 127453565 + 127453545 127453585 41 GTCCTAGTCTCCCTCCTCTTCGTCATGCTGCGCTACATGTA GTCCTAGTCTCCCTCCTCTTCGTCATGCTGCACTACATGTA < 41bp 1 0.692544252668855 1 0.424920201301575 experiment 0.614911494662289 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control GYPC ENSG00000136732 CDS Human protein_coding chr2:127453565 chr2:127453576 nonsynonymous SNV 0.003 0 32 hm5C_associated_SNPs_20163 0 0 1 2 1 GYPC chr2:127453522 3'AG 127453522 Downstream 55bp
chr11 65156922 65156922 1 + G A COAD 65156938 + 65156918 65156958 41 CACCGCGCTGTCCGCGAGGTCCTGCAGCTTCCAGACATCGC CACCACGCTGTCCGCGAGGTCCTGCAGCTTCCAGACATCGC < 41bp 1 0.0673241420408564 1 0.0715934932231903 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65156938 chr11:65156922 nonsynonymous SNV 0.966 2 5 hm5C_associated_SNPs_20165 0 0 0 0 2 FRMD8 chr11:65156832 3'AG 65156832 Downstream 91bp
chr11 65156922 65156922 1 + G A COAD 65156938 + 65156918 65156958 41 CACCGCGCTGTCCGCGAGGTCCTGCAGCTTCCAGACATCGC CACCACGCTGTCCGCGAGGTCCTGCAGCTTCCAGACATCGC < 41bp 1 0.0673241420408564 1 0.0715934932231903 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65156938 chr11:65156922 nonsynonymous SNV 0.966 2 5 hm5C_associated_SNPs_20165 0 0 0 0 2 FRMD8 chr11:65156999 5'GT 65156999 Upstream 78bp
chr5 10411484 10411484 1 + T C COAD 10411473 + 10411453 10411493 41 ATTCTTATTTATTGGGAGACCAGGAAGAAAATGAAAACAGT ATTCTTATTTATTGGGAGACCAGGAAGAAAACGAAAACAGT < 41bp 1 0.577766218871868 1 0.750838041305542 experiment 0.844467562256263 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10411473 chr5:10411484 synonymous SNV . 0 32 hm5C_associated_SNPs_20167 0 0 1 0 1 MARCH6 chr5:10411445 3'AG 10411445 Downstream 40bp
chr17 67515559 67515559 1 + G A COAD 67515562 + 67515542 67515582 41 CTGTCACCTTTTATGGCGCACTGTTTCGGGAGGTAGGTGAC CTGTCACCTTTTATGGCACACTGTTTCGGGAGGTAGGTGAC < 41bp 1 0.250188822163535 1 0.0393846035003662 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K6 ENSG00000108984 CDS Human protein_coding chr17:67515562 chr17:67515559 nonsynonymous SNV 0.986 3 18 hm5C_associated_SNPs_20168 0 0 1 0 1 MAP2K6 chr17:67515573 5'GT 67515573 Upstream 15bp
chr2 189873894 189873894 1 + A C COAD 189873898 + 189873878 189873918 41 GATGGTTCTCGTAAAAACCCCGCTAGAAACTGCAGAGACCT GATGGTTCTCGTAAAACCCCCGCTAGAAACTGCAGAGACCT < 41bp 1 0.284943665357055 1 0.19341653585434 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189873898 chr2:189873894 nonsynonymous SNV 0.997 1 17 hm5C_associated_SNPs_20170 0 0 0 0 1 COL3A1 chr2:189873947 5'GT 189873947 Upstream 54bp
chr1 156876652 156876652 1 + C T COAD 156876640 + 156876620 156876660 41 TGCGATCCCCAGACTGGAGCCTGCTTCTGCCCCGCAGAGAG TGCGATCCCCAGACTGGAGCCTGCTTCTGCCCTGCAGAGAG < 41bp 1 0.338088596934687 1 0.185085475444794 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156876640 chr1:156876652 synonymous SNV . 0 33 hm5C_associated_SNPs_20171 0 0 0 0 1 PEAR1 chr1:156876672 5'GT 156876672 Upstream 21bp
chr1 46739342 46739342 1 + T C COAD 46739322 + 46739302 46739342 41 TGCTGGTCCTGGATTATATTCTGGCGGTGACCCGAAGCCGT TGCTGGTCCTGGATTATATTCTGGCGGTGACCCGAAGCCGC < 41bp 1 0.725370052126368 1 0.50407737493515 experiment 0.549259895747264 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739322 chr1:46739342 synonymous SNV . 0 41 hm5C_associated_SNPs_20172 0 0 1 0 2 RAD54L chr1:46739296 3'AG 46739296 Downstream 47bp
chr1 46739342 46739342 1 + T C COAD 46739322 + 46739302 46739342 41 TGCTGGTCCTGGATTATATTCTGGCGGTGACCCGAAGCCGT TGCTGGTCCTGGATTATATTCTGGCGGTGACCCGAAGCCGC < 41bp 1 0.725370052126368 1 0.50407737493515 experiment 0.549259895747264 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739322 chr1:46739342 synonymous SNV . 0 41 hm5C_associated_SNPs_20172 0 0 1 0 2 RAD54L chr1:46739419 5'GT 46739419 Upstream 78bp
chr10 43604481 43604481 1 + C T COAD 43604501 + 43604481 43604521 41 CTGGTTCTCAACCGGAACCTCTCCATCTCGGAGAACCGCAC TTGGTTCTCAACCGGAACCTCTCCATCTCGGAGAACCGCAC < 41bp 1 0.658229472227978 1 0.954377830028534 experiment 0.683541055544044 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RET ENSG00000165731 CDS Human protein_coding chr10:43604501 chr10:43604481 synonymous SNV . 0 1 hm5C_associated_SNPs_20173 1 0 0 0 1 RET chr10:43604479 3'AG 43604479 Downstream 3bp
chr19 45797675 45797675 1 + G T COAD 45797692 + 45797672 45797712 41 TGAGCGCCCGTCACTGTTGCCAAATGGGAAAGAAAACAGGT TGATCGCCCGTCACTGTTGCCAAATGGGAAAGAAAACAGGT < 41bp 1 0.228842209846479 1 0.816802203655243 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45797692 chr19:45797675 nonsynonymous SNV 0.977 1 4 hm5C_associated_SNPs_20174 0 0 1 0 2 MARK4 chr19:45797607 3'AG 45797607 Downstream 69bp
chr19 45797675 45797675 1 + G T COAD 45797692 + 45797672 45797712 41 TGAGCGCCCGTCACTGTTGCCAAATGGGAAAGAAAACAGGT TGATCGCCCGTCACTGTTGCCAAATGGGAAAGAAAACAGGT < 41bp 1 0.228842209846479 1 0.816802203655243 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45797692 chr19:45797675 nonsynonymous SNV 0.977 1 4 hm5C_associated_SNPs_20174 0 0 1 0 2 MARK4 chr19:45797710 5'GT 45797710 Upstream 36bp
chr2 239257977 239257977 1 + G A COAD 239257989 + 239257969 239258009 41 AATTCCTCGGCCTGGGAGTGCAAGACCAGCCCCTCCCCGGG AATTCCTCAGCCTGGGAGTGCAAGACCAGCCCCTCCCCGGG < 41bp 1 0.778764145622035 1 0.581801414489746 experiment 0.442471708755929 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239257989 chr2:239257977 nonsynonymous SNV 0.971 4 9 hm5C_associated_SNPs_20175 0 0 1 0 2 TRAF3IP1 chr2:239257966 3'AG 239257966 Downstream 12bp
chr2 239257977 239257977 1 + G A COAD 239257989 + 239257969 239258009 41 AATTCCTCGGCCTGGGAGTGCAAGACCAGCCCCTCCCCGGG AATTCCTCAGCCTGGGAGTGCAAGACCAGCCCCTCCCCGGG < 41bp 1 0.778764145622035 1 0.581801414489746 experiment 0.442471708755929 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239257989 chr2:239257977 nonsynonymous SNV 0.971 4 9 hm5C_associated_SNPs_20175 0 0 1 0 2 TRAF3IP1 chr2:239258049 5'GT 239258049 Upstream 73bp
chr17 4685827 4685827 1 + C T COAD 4685815 + 4685795 4685835 41 CAGATGCTGCGCTCGGTCTTCTCCTCGGCGTTCGGGGTGCT CAGATGCTGCGCTCGGTCTTCTCCTCGGCGTTTGGGGTGCT < 41bp 1 0.407338402086912 1 0.436673521995544 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TM4SF5 ENSG00000142484 CDS Human protein_coding chr17:4685815 chr17:4685827 synonymous SNV . 0 33 hm5C_associated_SNPs_20176 0 0 1 0 1 TM4SF5 chr17:4685798 3'AG 4685798 Downstream 30bp
chrX 47774360 47774360 1 + T G COAD 47774348 + 47774328 47774368 41 AAATTTGGAATTAAGCCTTCCCAGAGGAGAATTTCTGGGAA AAATTTGGAATTAAGCCTTCCCAGAGGAGAATGTCTGGGAA < 41bp 1 0.226383131420784 1 0.592284679412842 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF81 ENSG00000197779 CDS Human protein_coding chrX:47774348 chrX:47774360 nonsynonymous SNV 0.759 0 33 hm5C_associated_SNPs_20177 0 0 0 0 1 ZNF81 chrX:47774323 3'AG 47774323 Downstream 38bp
chr6 139487470 139487470 1 + C T COAD 139487463 + 139487443 139487483 41 GATCTGCAGCTTCGGTAGGCCGGTGGACCTGGAGAAGGACG GATCTGCAGCTTCGGTAGGCCGGTGGATCTGGAGAAGGACG < 41bp 1 0.530876897993428 1 0.513662934303284 experiment 0.938246204013143 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECA ENSG00000112406 CDS Human protein_coding chr6:139487463 chr6:139487470 synonymous SNV . 0 28 hm5C_associated_SNPs_20178 0 0 1 0 1 HECA chr6:139487421 3'AG 139487421 Downstream 50bp
chr19 1978445 1978445 1 + C T COAD 1978465 + 1978445 1978485 41 CGATCAAGTCCCGGGCCCCGCAGCTGCACCTGGAGTACCGG TGATCAAGTCCCGGGCCCCGCAGCTGCACCTGGAGTACCGG < 41bp 1 0.461730765032173 1 0.775980472564697 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1978465 chr19:1978445 nonsynonymous SNV 0.966 2 1 hm5C_associated_SNPs_20180 0 0 1 0 2 CSNK1G2 chr19:1978441 3'AG 1978441 Downstream 5bp
chr19 1978445 1978445 1 + C T COAD 1978465 + 1978445 1978485 41 CGATCAAGTCCCGGGCCCCGCAGCTGCACCTGGAGTACCGG TGATCAAGTCCCGGGCCCCGCAGCTGCACCTGGAGTACCGG < 41bp 1 0.461730765032173 1 0.775980472564697 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1978465 chr19:1978445 nonsynonymous SNV 0.966 2 1 hm5C_associated_SNPs_20180 0 0 1 0 2 CSNK1G2 chr19:1978510 5'GT 1978510 Upstream 66bp
chr5 7889311 7889311 1 + T C COAD 7889293 + 7889273 7889313 41 GTGCAGTAAACAAGGGGCAGCCGATTATAGCCGCTTTGTAC GTGCAGTAAACAAGGGGCAGCCGATTATAGCCGCTTTGCAC < 41bp 1 0.224233241508487 1 0.110122352838516 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7889293 chr5:7889311 nonsynonymous SNV 0.002 1 39 hm5C_associated_SNPs_20181 0 0 1 1 1 MTRR chr5:7889388 5'GT 7889388 Upstream 78bp
chr1 78001623 78001623 1 + T C COAD 78001612 + 78001592 78001632 41 CTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGTGGACGACAC CTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGCGGACGACAC < 41bp 1 0.370552992081492 1 0.440526396036148 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001612 chr1:78001623 nonsynonymous SNV 0.000 0 32 hm5C_associated_SNPs_20182 0 0 0 0 1 AK5 chr1:78001532 3'AG 78001532 Downstream 92bp
chr16 70509358 70509358 1 + T C COAD 70509347 + 70509327 70509367 41 CTGCTCCGCACCTTCGGGGGCGGCTTTGAGCTGCACACCTG CTGCTCCGCACCTTCGGGGGCGGCTTTGAGCCGCACACCTG < 41bp 1 0.382970111469673 1 0.36390945315361 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FUK ENSG00000157353 CDS Human protein_coding chr16:70509347 chr16:70509358 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_20183 0 0 1 0 1 FUK chr16:70509396 5'GT 70509396 Upstream 39bp
chr19 13930237 13930237 1 + G A COAD 13930238 + 13930218 13930258 41 CCCATGCACACCTGTGCCCGCTACCTGTTCACCGCACTGCT CCCATGCACACCTGTGCCCACTACCTGTTCACCGCACTGCT < 41bp 1 0.156162167971747 1 0.0408629477024078 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13930238 chr19:13930237 nonsynonymous SNV 0.968 1 20 hm5C_associated_SNPs_20185 0 0 1 0 2 ZSWIM4 chr19:13930171 3'AG 13930171 Downstream 67bp
chr19 13930237 13930237 1 + G A COAD 13930238 + 13930218 13930258 41 CCCATGCACACCTGTGCCCGCTACCTGTTCACCGCACTGCT CCCATGCACACCTGTGCCCACTACCTGTTCACCGCACTGCT < 41bp 1 0.156162167971747 1 0.0408629477024078 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13930238 chr19:13930237 nonsynonymous SNV 0.968 1 20 hm5C_associated_SNPs_20185 0 0 1 0 2 ZSWIM4 chr19:13930306 5'GT 13930306 Upstream 70bp
chr2 130939973 130939973 1 + C T COAD 130939957 + 130939937 130939977 41 CGGCGGAAGAAGGTGCTGAGCACCGAGGAGATGGAGCTGTA CGGCGGAAGAAGGTGCTGAGCACCGAGGAGATGGAGTTGTA < 41bp 1 0.616605639049083 1 0.193442434072495 experiment 0.766788721901835 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MZT2B ENSG00000152082 CDS Human protein_coding chr2:130939957 chr2:130939973 synonymous SNV . 0 37 hm5C_associated_SNPs_20187 0 0 1 0 1 MZT2B chr2:130940025 5'GT 130940025 Upstream 53bp
chr2 189458720 189458720 1 + G A COAD 189458701 + 189458681 189458721 41 GGGACTAACTCTTGAAGGCACAGTATTTTGTCTCGACCCGT GGGACTAACTCTTGAAGGCACAGTATTTTGTCTCGACCCAT < 41bp 1 0.61055792879926 1 0.112538546323776 experiment 0.77888414240148 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GULP1 ENSG00000144366 CDS Human protein_coding chr2:189458701 chr2:189458720 synonymous SNV . 0 40 hm5C_associated_SNPs_20188 0 0 1 0 1 GULP1 chr2:189458667 3'AG 189458667 Downstream 54bp
chr2 189458720 189458720 1 + G A COAD 189458714 + 189458694 189458734 41 GAAGGCACAGTATTTTGTCTCGACCCGTTAGACAGTAGGTG GAAGGCACAGTATTTTGTCTCGACCCATTAGACAGTAGGTG < 41bp 1 0.320207044873536 1 0.329787701368332 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GULP1 ENSG00000144366 CDS Human protein_coding chr2:189458714 chr2:189458720 synonymous SNV . 0 27 hm5C_associated_SNPs_20189 0 0 1 0 1 GULP1 chr2:189458667 3'AG 189458667 Downstream 54bp
chr13 52293457 52293457 1 + G A COAD 52293456 + 52293436 52293476 41 GGCAGCGCCTGGGAGGTTATCGGACCAGTGCTGTGGCCTCA GGCAGCGCCTGGGAGGTTATCAGACCAGTGCTGTGGCCTCA < 41bp 1 0.48844207275262 1 0.882612228393555 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDFY2 ENSG00000139668 CDS Human protein_coding chr13:52293456 chr13:52293457 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_20190 0 0 1 0 1 WDFY2 chr13:52293484 5'GT 52293484 Upstream 28bp
chr8 95885679 95885679 1 + G A COAD 95885659 + 95885639 95885679 41 CCAGGCAGGAGCTGTGTGTTCTGACTTCTTTAACAAGGCTG CCAGGCAGGAGCTGTGTGTTCTGACTTCTTTAACAAGGCTA < 41bp 1 0.606656112171103 1 0.171868026256561 experiment 0.786687775657793 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INTS8 ENSG00000164941 CDS Human protein_coding chr8:95885659 chr8:95885679 nonsynonymous SNV 0.999 4 41 hm5C_associated_SNPs_20192 0 0 1 0 2 INTS8 chr8:95885602 3'AG 95885602 Downstream 78bp
chr8 95885679 95885679 1 + G A COAD 95885659 + 95885639 95885679 41 CCAGGCAGGAGCTGTGTGTTCTGACTTCTTTAACAAGGCTG CCAGGCAGGAGCTGTGTGTTCTGACTTCTTTAACAAGGCTA < 41bp 1 0.606656112171103 1 0.171868026256561 experiment 0.786687775657793 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INTS8 ENSG00000164941 CDS Human protein_coding chr8:95885659 chr8:95885679 nonsynonymous SNV 0.999 4 41 hm5C_associated_SNPs_20192 0 0 1 0 2 INTS8 chr8:95885705 5'GT 95885705 Upstream 27bp
chr10 287975 287975 1 + G A COAD 287976 + 287956 287996 41 TCCAGATACCTAATCATGAGCTGGTTTGGGCTAAAATGAAA TCCAGATACCTAATCATGAACTGGTTTGGGCTAAAATGAAA < 41bp 1 0.50051135294069 1 0.153655201196671 experiment 0.998977294118621 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZMYND11 ENSG00000015171 CDS Human protein_coding chr10:287976 chr10:287975 synonymous SNV . 0 20 hm5C_associated_SNPs_20193 0 0 1 0 1 ZMYND11 chr10:287961 3'AG 287961 Downstream 15bp
chr10 103292173 103292173 1 + G A COAD 103292177 + 103292157 103292197 41 ATAGTAAGCGGCCTTCGAGACAACACAATCAAGGTGAGGTC ATAGTAAGCGGCCTTCAAGACAACACAATCAAGGTGAGGTC < 41bp 1 0.609638939029339 1 0.262453019618988 experiment 0.780722121941322 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BTRC ENSG00000166167 CDS Human protein_coding chr10:103292177 chr10:103292173 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_20194 0 0 0 0 1 BTRC chr10:103292189 5'GT 103292189 Upstream 17bp
chr9 97767846 97767846 1 + A C COAD 97767847 + 97767827 97767867 41 ACGAAATGGATTGGAGTGAACCGGAGACCCCGAAAACGGAA ACGAAATGGATTGGAGTGACCCGGAGACCCCGAAAACGGAA < 41bp 1 0.658528383161823 1 0.734252035617828 experiment 0.682943233676354 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf3 ENSG00000148120 CDS Human protein_coding chr9:97767847 chr9:97767846 nonsynonymous SNV 0.814 2 20 hm5C_associated_SNPs_20195 0 0 1 0 2 C9orf3 chr9:97767824 3'AG 97767824 Downstream 23bp
chr9 97767846 97767846 1 + A C COAD 97767847 + 97767827 97767867 41 ACGAAATGGATTGGAGTGAACCGGAGACCCCGAAAACGGAA ACGAAATGGATTGGAGTGACCCGGAGACCCCGAAAACGGAA < 41bp 1 0.658528383161823 1 0.734252035617828 experiment 0.682943233676354 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf3 ENSG00000148120 CDS Human protein_coding chr9:97767847 chr9:97767846 nonsynonymous SNV 0.814 2 20 hm5C_associated_SNPs_20195 0 0 1 0 2 C9orf3 chr9:97767898 5'GT 97767898 Upstream 53bp
chr2 204053285 204053285 1 + A G COAD 204053265 + 204053245 204053285 41 TGGCTATAAACAGAGGGGACCAGCTGCAGTAGAGGCACTCA TGGCTATAAACAGAGGGGACCAGCTGCAGTAGAGGCACTCG < 41bp 1 0.148502526022557 1 0.486796587705612 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204053265 chr2:204053285 nonsynonymous SNV 0.996 5 41 hm5C_associated_SNPs_20196 0 0 0 0 2 NBEAL1 chr2:204053195 3'AG 204053195 Downstream 91bp
chr2 204053285 204053285 1 + A G COAD 204053265 + 204053245 204053285 41 TGGCTATAAACAGAGGGGACCAGCTGCAGTAGAGGCACTCA TGGCTATAAACAGAGGGGACCAGCTGCAGTAGAGGCACTCG < 41bp 1 0.148502526022557 1 0.486796587705612 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204053265 chr2:204053285 nonsynonymous SNV 0.996 5 41 hm5C_associated_SNPs_20196 0 0 0 0 2 NBEAL1 chr2:204053312 5'GT 204053312 Upstream 28bp
chr7 99621873 99621873 1 + G A COAD 99621875 + 99621855 99621895 41 TTTGACCTTCATCACGAGGCCACCCAGTCCCACTTCAAACA TTTGACCTTCATCACGAGACCACCCAGTCCCACTTCAAACA < 41bp 1 0.317356986487522 1 0.0715994238853455 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99621875 chr7:99621873 nonsynonymous SNV 0.964 0 19 hm5C_associated_SNPs_20197 0 0 1 0 2 ZKSCAN1 chr7:99621777 3'AG 99621777 Downstream 97bp
chr7 99621873 99621873 1 + G A COAD 99621875 + 99621855 99621895 41 TTTGACCTTCATCACGAGGCCACCCAGTCCCACTTCAAACA TTTGACCTTCATCACGAGACCACCCAGTCCCACTTCAAACA < 41bp 1 0.317356986487522 1 0.0715994238853455 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99621875 chr7:99621873 nonsynonymous SNV 0.964 0 19 hm5C_associated_SNPs_20197 0 0 1 0 2 ZKSCAN1 chr7:99621930 5'GT 99621930 Upstream 58bp
chr3 57898181 57898181 1 + A C COAD 57898199 + 57898179 57898219 41 AGAGATGAATTGCTTAGTGCCCGAGATGAAATTTTGCTCCT AGCGATGAATTGCTTAGTGCCCGAGATGAAATTTTGCTCCT < 41bp 1 0.579949404499702 1 0.754823684692383 experiment 0.840101191000596 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLMAP ENSG00000163681 CDS Human protein_coding chr3:57898199 chr3:57898181 nonsynonymous SNV 0.989 1 3 hm5C_associated_SNPs_20198 0 0 1 0 1 SLMAP chr3:57898108 3'AG 57898108 Downstream 74bp
chr22 21345925 21345925 1 + G A COAD 21345926 + 21345906 21345946 41 TGTACCCCCAGGTGGACACGCATCCCAACTGAACACCTGCT TGTACCCCCAGGTGGACACACATCCCAACTGAACACCTGCT < 41bp 1 0.0574001077080899 1 0.0876547694206238 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21345926 chr22:21345925 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_20200 0 0 1 0 1 LZTR1 chr22:21345917 3'AG 21345917 Downstream 9bp
chr7 5644956 5644956 1 + G A COAD 5644976 + 5644956 5644996 41 GGCGACACTCCTGTGGACTTCTTCTTCGAGTTCTGCGACTA AGCGACACTCCTGTGGACTTCTTCTTCGAGTTCTGCGACTA < 41bp 1 0.230654783329136 1 0.183800637722015 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5644976 chr7:5644956 nonsynonymous SNV 0.955 0 1 hm5C_associated_SNPs_20202 0 0 1 1 1 FSCN1 chr7:5644903 3'AG 5644903 Downstream 54bp
chr19 11145689 11145689 1 + G A COAD 11145669 + 11145649 11145689 41 CATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACG CATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACA < 41bp 1 0.196785217959161 1 0.144530385732651 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145669 chr19:11145689 nonsynonymous SNV 0.464 4 41 hm5C_associated_SNPs_20203 0 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 100bp
chr19 11145689 11145689 1 + G A COAD 11145672 + 11145652 11145692 41 GGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACGACG GGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACAACG < 41bp 1 0.591752329720875 1 0.521915912628174 experiment 0.81649534055825 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145672 chr19:11145689 nonsynonymous SNV 0.464 4 38 hm5C_associated_SNPs_20204 0 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 100bp
chr19 11145689 11145689 1 + G A COAD 11145691 + 11145671 11145711 41 TCGTGGATCATCAAGGACGACGCGGAGGTGGAGCGGCTGAC TCGTGGATCATCAAGGACAACGCGGAGGTGGAGCGGCTGAC < 41bp 1 0.746125720128292 1 0.6867436170578 experiment 0.507748559743415 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145691 chr19:11145689 nonsynonymous SNV 0.464 4 19 hm5C_associated_SNPs_20205 0 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 100bp
chr19 11145689 11145689 1 + G A COAD 11145704 + 11145684 11145724 41 AGGACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAG AGGACAACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAG < 41bp 1 0.473288650001019 1 0.517554402351379 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145704 chr19:11145689 nonsynonymous SNV 0.464 4 6 hm5C_associated_SNPs_20206 0 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 100bp
chr19 11145689 11145689 1 + G A COAD 11145707 + 11145687 11145727 41 ACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAGGAG ACAACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAGGAG < 41bp 1 0.222537161482395 1 0.246035575866699 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145707 chr19:11145689 nonsynonymous SNV 0.464 4 3 hm5C_associated_SNPs_20207 0 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 100bp
chr19 10893717 10893717 1 + A C COAD 10893721 + 10893701 10893741 41 CTGGCAGCTGAGAGGAAGTTCTTCCTCTCCCACCCGGCCTA CTGGCAGCTGAGAGGACGTTCTTCCTCTCCCACCCGGCCTA < 41bp 1 0.180642926482493 1 0.115686297416687 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10893721 chr19:10893717 nonsynonymous SNV 0.996 4 17 hm5C_associated_SNPs_20211 0 0 1 0 1 DNM2 chr19:10893796 5'GT 10893796 Upstream 80bp
chr1 53420462 53420462 1 + A G COAD 53420465 + 53420445 53420485 41 AGAAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT AGAAGATGAGTAAGGGAGGCCTTGGAATAAAAGTGAGTGTT < 41bp 1 0.307514968564535 1 0.183474898338318 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53420465 chr1:53420462 nonsynonymous SNV 0.004 3 18 hm5C_associated_SNPs_20212 0 0 1 1 2 SCP2 chr1:53420412 3'AG 53420412 Downstream 51bp
chr1 53420462 53420462 1 + A G COAD 53420465 + 53420445 53420485 41 AGAAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT AGAAGATGAGTAAGGGAGGCCTTGGAATAAAAGTGAGTGTT < 41bp 1 0.307514968564535 1 0.183474898338318 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53420465 chr1:53420462 nonsynonymous SNV 0.004 3 18 hm5C_associated_SNPs_20212 0 0 1 1 2 SCP2 chr1:53420476 5'GT 53420476 Upstream 15bp
chr2 42909547 42909547 1 + G A COAD 42909544 + 42909524 42909564 41 TCATTTTGTTTCTTTAGTTTCACGCTATGGATACATTGTAT TCATTTTGTTTCTTTAGTTTCACACTATGGATACATTGTAT < 41bp 1 0.0587374311710698 1 0.165441006422043 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MTA3 ENSG00000057935 CDS Human protein_coding chr2:42909544 chr2:42909547 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_20213 0 0 1 0 1 MTA3 chr2:42909541 3'AG 42909541 Downstream 7bp
chr16 70589098 70589098 1 + G A COAD 70589086 + 70589066 70589106 41 TTGCCCTGACAGGAGGAGAGCTGGTCTATTTCGAGATGGAT TTGCCCTGACAGGAGGAGAGCTGGTCTATTTCAAGATGGAT < 41bp 1 0.209837980338373 1 0.180598556995392 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589086 chr16:70589098 nonsynonymous SNV 0.996 4 33 hm5C_associated_SNPs_20214 0 0 1 0 1 SF3B3 chr16:70589109 5'GT 70589109 Upstream 12bp
chr16 70589098 70589098 1 + G A COAD 70589091 + 70589071 70589111 41 CTGACAGGAGGAGAGCTGGTCTATTTCGAGATGGATCCTGT CTGACAGGAGGAGAGCTGGTCTATTTCAAGATGGATCCTGT < 41bp 1 0.0782239318343613 1 0.0823500156402588 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589091 chr16:70589098 nonsynonymous SNV 0.996 4 28 hm5C_associated_SNPs_20215 0 0 1 0 1 SF3B3 chr16:70589109 5'GT 70589109 Upstream 12bp
chrX 41075247 41075247 1 + A T COAD 41075229 + 41075209 41075249 41 CTAAAGCGATTTGACTATGACTGGGAAAGAGAATGTGCAAT CTAAAGCGATTTGACTATGACTGGGAAAGAGAATGTGCTAT < 41bp 1 0.378960159238685 1 0.242537409067154 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41075229 chrX:41075247 synonymous SNV . 0 39 hm5C_associated_SNPs_20217 0 0 1 0 1 USP9X chrX:41075152 3'AG 41075152 Downstream 96bp
chr2 119732137 119732137 1 + G A COAD 119732128 + 119732108 119732148 41 CCCCAAGGCCCACCGGGAGTCAAGGGAGAGGCGGGTGAGTA CCCCAAGGCCCACCGGGAGTCAAGGGAGAAGCGGGTGAGTA < 41bp 1 0.795701549103593 1 0.87251079082489 experiment 0.408596901792815 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MARCO ENSG00000019169 CDS Human protein_coding chr2:119732128 chr2:119732137 synonymous SNV . 0 30 hm5C_associated_SNPs_20218 0 0 0 0 2 MARCO chr2:119732097 3'AG 119732097 Downstream 41bp
chr2 119732137 119732137 1 + G A COAD 119732128 + 119732108 119732148 41 CCCCAAGGCCCACCGGGAGTCAAGGGAGAGGCGGGTGAGTA CCCCAAGGCCCACCGGGAGTCAAGGGAGAAGCGGGTGAGTA < 41bp 1 0.795701549103593 1 0.87251079082489 experiment 0.408596901792815 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MARCO ENSG00000019169 CDS Human protein_coding chr2:119732128 chr2:119732137 synonymous SNV . 0 30 hm5C_associated_SNPs_20218 0 0 0 0 2 MARCO chr2:119732141 5'GT 119732141 Upstream 5bp
chr21 40191440 40191440 1 + C A COAD 40191451 + 40191431 40191471 41 TCCCAAAGACCACGACTCCCCTGAGAACGGTGCGGACAGCT TCCCAAAGAACACGACTCCCCTGAGAACGGTGCGGACAGCT < 41bp 1 0.541512849161963 1 0.430762946605682 experiment 0.916974301676074 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191451 chr21:40191440 nonsynonymous SNV 0.034 0 10 hm5C_associated_SNPs_20221 0 0 1 0 1 ETS2 chr21:40191427 3'AG 40191427 Downstream 14bp
chr14 53226459 53226459 1 + T C COAD 53226460 + 53226440 53226480 41 AATCCTAATGCTGGATTTGTCCATCAACTTCAGGTAACTTT AATCCTAATGCTGGATTTGCCCATCAACTTCAGGTAACTTT < 41bp 1 0.0614838551550069 1 0.290076613426208 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STYX ENSG00000198252 CDS Human protein_coding chr14:53226460 chr14:53226459 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_20222 0 0 1 0 2 STYX chr14:53226400 3'AG 53226400 Downstream 60bp
chr14 53226459 53226459 1 + T C COAD 53226460 + 53226440 53226480 41 AATCCTAATGCTGGATTTGTCCATCAACTTCAGGTAACTTT AATCCTAATGCTGGATTTGCCCATCAACTTCAGGTAACTTT < 41bp 1 0.0614838551550069 1 0.290076613426208 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STYX ENSG00000198252 CDS Human protein_coding chr14:53226460 chr14:53226459 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_20222 0 0 1 0 2 STYX chr14:53226472 5'GT 53226472 Upstream 14bp
chr14 53226459 53226459 1 + T C COAD 53226470 + 53226450 53226490 41 CTGGATTTGTCCATCAACTTCAGGTAACTTTTCTTCCTCTT CTGGATTTGCCCATCAACTTCAGGTAACTTTTCTTCCTCTT < 41bp 1 0.544088065239978 1 0.7628413438797 experiment 0.911823869520044 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control STYX ENSG00000198252 CDS Human protein_coding chr14:53226470 chr14:53226459 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_20223 0 0 1 0 2 STYX chr14:53226400 3'AG 53226400 Downstream 60bp
chr14 53226459 53226459 1 + T C COAD 53226470 + 53226450 53226490 41 CTGGATTTGTCCATCAACTTCAGGTAACTTTTCTTCCTCTT CTGGATTTGCCCATCAACTTCAGGTAACTTTTCTTCCTCTT < 41bp 1 0.544088065239978 1 0.7628413438797 experiment 0.911823869520044 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control STYX ENSG00000198252 CDS Human protein_coding chr14:53226470 chr14:53226459 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_20223 0 0 1 0 2 STYX chr14:53226472 5'GT 53226472 Upstream 14bp
chr20 62366598 62366598 1 + C G COAD 62366599 + 62366579 62366619 41 CTGGACCAGTGTGTGGAGACCCTGCAGAAGCAGACCAGGGT CTGGACCAGTGTGTGGAGAGCCTGCAGAAGCAGACCAGGGT < 41bp 1 0.0695836071003268 1 0.443540096282959 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZGPAT ENSG00000197114;ENSG00000273154 CDS Human other chr20:62366599 chr20:62366598 nonsynonymous SNV 0.013 1 20 hm5C_associated_SNPs_20225 0 0 1 0 2 ZGPAT chr20:62366511 3'AG 62366511 Downstream 88bp
chr20 62366598 62366598 1 + C G COAD 62366599 + 62366579 62366619 41 CTGGACCAGTGTGTGGAGACCCTGCAGAAGCAGACCAGGGT CTGGACCAGTGTGTGGAGAGCCTGCAGAAGCAGACCAGGGT < 41bp 1 0.0695836071003268 1 0.443540096282959 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZGPAT ENSG00000197114;ENSG00000273154 CDS Human other chr20:62366599 chr20:62366598 nonsynonymous SNV 0.013 1 20 hm5C_associated_SNPs_20225 0 0 1 0 2 ZGPAT chr20:62366588 3'AG 62366588 Downstream 11bp
chr2 162242082 162242082 1 + G A COAD 162242075 + 162242055 162242095 41 GGGTCACTTAAACAAGCCATCTATCCAGGTATTGCCTATAT GGGTCACTTAAACAAGCCATCTATCCAAGTATTGCCTATAT < 41bp 1 0.081705485142934 1 0.267526358366013 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMD14 ENSG00000115233 CDS Human protein_coding chr2:162242075 chr2:162242082 synonymous SNV . 0 28 hm5C_associated_SNPs_20226 0 0 1 0 1 PSMD14 chr2:162242082 5'GT 162242082 Upstream 1bp
chr22 46611214 46611214 1 + C T COAD 46611227 + 46611207 46611247 41 GTCCACGCGTGTGAAGGCTGCAAGGTAGAGGGGAGCTGGAA GTCCACGTGTGTGAAGGCTGCAAGGTAGAGGGGAGCTGGAA < 41bp 1 0.72351972402327 1 0.423186719417572 experiment 0.55296055195346 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPARA ENSG00000186951 CDS Human protein_coding chr22:46611227 chr22:46611214 nonsynonymous SNV 0.918 5 8 hm5C_associated_SNPs_20227 0 0 1 0 1 PPARA chr22:46611230 5'GT 46611230 Upstream 17bp
chr6 31593370 31593370 1 + C T COAD 31593350 + 31593330 31593370 41 GGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGC GGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGT < 41bp 1 0.53681996426197 1 0.255204319953918 experiment 0.92636007147606 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593350 chr6:31593370 synonymous SNV . 0 41 hm5C_associated_SNPs_20229 0 0 1 1 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 19bp
chr6 31593370 31593370 1 + C T COAD 31593351 + 31593331 31593371 41 GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCG GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGTG < 41bp 1 0.386938764480967 1 0.0896115005016327 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593351 chr6:31593370 synonymous SNV . 0 40 hm5C_associated_SNPs_20230 0 0 1 1 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 19bp
chr6 31593370 31593370 1 + C T COAD 31593352 + 31593332 31593372 41 CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGG CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGTGG < 41bp 1 0.343746388630413 1 0.101510733366013 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593352 chr6:31593370 synonymous SNV . 0 39 hm5C_associated_SNPs_20231 0 0 1 1 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 19bp
chr6 31593370 31593370 1 + C T COAD 31593353 + 31593333 31593373 41 TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGGA TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGTGGA < 41bp 1 0.289890815152502 1 0.327859133481979 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593353 chr6:31593370 synonymous SNV . 0 38 hm5C_associated_SNPs_20232 0 0 1 1 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 19bp
chr6 31593370 31593370 1 + C T COAD 31593388 + 31593368 31593408 41 CGCGGAATGATGCCGCCTTTCGTGAGTCTTGGTGTCTTGTC CGTGGAATGATGCCGCCTTTCGTGAGTCTTGGTGTCTTGTC < 41bp 1 0.667985829078255 1 0.736867547035217 experiment 0.66402834184349 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593388 chr6:31593370 synonymous SNV . 0 3 hm5C_associated_SNPs_20233 0 0 1 1 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 19bp
chr3 49713566 49713566 1 + G A COAD 49713571 + 49713551 49713591 41 AAGCGCCCCAAGGCCGAGTCCTTCTTTCAGACCAAAGCCTT AAGCGCCCCAAGGCCAAGTCCTTCTTTCAGACCAAAGCCTT < 41bp 1 0.185584742628792 1 0.0916586220264435 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49713571 chr3:49713566 nonsynonymous SNV 0.985 1 16 hm5C_associated_SNPs_20241 0 0 1 0 2 APEH chr3:49713489 3'AG 49713489 Downstream 78bp
chr3 49713566 49713566 1 + G A COAD 49713571 + 49713551 49713591 41 AAGCGCCCCAAGGCCGAGTCCTTCTTTCAGACCAAAGCCTT AAGCGCCCCAAGGCCAAGTCCTTCTTTCAGACCAAAGCCTT < 41bp 1 0.185584742628792 1 0.0916586220264435 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49713571 chr3:49713566 nonsynonymous SNV 0.985 1 16 hm5C_associated_SNPs_20241 0 0 1 0 2 APEH chr3:49713652 5'GT 49713652 Upstream 87bp
chr1 22307561 22307561 1 + C T COAD 22307567 + 22307547 22307587 41 CAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGG CAGGTGGTGTTGGGTGAGTACGACCGTGCTGTGAAGGAGGG < 41bp 1 0.398730251457939 1 0.487068176269531 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307567 chr1:22307561 synonymous SNV . 0 15 hm5C_associated_SNPs_20242 0 0 0 0 1 CELA3B chr1:22307531 3'AG 22307531 Downstream 31bp
chr1 22307561 22307561 1 + C T COAD 22307570 + 22307550 22307590 41 GTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCC GTGGTGTTGGGTGAGTACGACCGTGCTGTGAAGGAGGGCCC < 41bp 1 0.258387887033949 1 0.578733742237091 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307570 chr1:22307561 synonymous SNV . 0 12 hm5C_associated_SNPs_20243 0 0 0 0 1 CELA3B chr1:22307531 3'AG 22307531 Downstream 31bp
chr1 22307561 22307561 1 + C T COAD 22307575 + 22307555 22307595 41 GTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCCCGAGC GTTGGGTGAGTACGACCGTGCTGTGAAGGAGGGCCCCGAGC < 41bp 1 0.547001582939934 1 0.101135909557343 experiment 0.905996834120132 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307575 chr1:22307561 synonymous SNV . 0 7 hm5C_associated_SNPs_20244 0 0 0 0 1 CELA3B chr1:22307531 3'AG 22307531 Downstream 31bp
chr12 104340405 104340405 1 + G A COAD 104340419 + 104340399 104340439 41 CTATGCGAGTCAGAAGAAAACATTTGAAATTAATCCCAGAC CTATGCAAGTCAGAAGAAAACATTTGAAATTAATCCCAGAC < 41bp 1 0.117938222734995 1 0.224143326282501 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340419 chr12:104340405 synonymous SNV . 0 7 hm5C_associated_SNPs_20247 0 0 1 0 2 HSP90B1 chr12:104340396 3'AG 104340396 Downstream 10bp
chr12 104340405 104340405 1 + G A COAD 104340419 + 104340399 104340439 41 CTATGCGAGTCAGAAGAAAACATTTGAAATTAATCCCAGAC CTATGCAAGTCAGAAGAAAACATTTGAAATTAATCCCAGAC < 41bp 1 0.117938222734995 1 0.224143326282501 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340419 chr12:104340405 synonymous SNV . 0 7 hm5C_associated_SNPs_20247 0 0 1 0 2 HSP90B1 chr12:104340474 5'GT 104340474 Upstream 70bp
chr17 61489398 61489398 1 + G A COAD 61489416 + 61489396 61489436 41 ACGTTGACTACAGTGGAATGCGCCCTTTGGATAGGGCAGTG ACATTGACTACAGTGGAATGCGCCCTTTGGATAGGGCAGTG < 41bp 1 0.333560741744543 1 0.134626418352127 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TANC2 ENSG00000170921 CDS Human protein_coding chr17:61489416 chr17:61489398 nonsynonymous SNV 0.996 2 3 hm5C_associated_SNPs_20248 0 0 1 0 2 TANC2 chr17:61489359 3'AG 61489359 Downstream 40bp
chr17 61489398 61489398 1 + G A COAD 61489416 + 61489396 61489436 41 ACGTTGACTACAGTGGAATGCGCCCTTTGGATAGGGCAGTG ACATTGACTACAGTGGAATGCGCCCTTTGGATAGGGCAGTG < 41bp 1 0.333560741744543 1 0.134626418352127 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TANC2 ENSG00000170921 CDS Human protein_coding chr17:61489416 chr17:61489398 nonsynonymous SNV 0.996 2 3 hm5C_associated_SNPs_20248 0 0 1 0 2 TANC2 chr17:61489491 5'GT 61489491 Upstream 94bp
chr2 209190006 209190006 1 + C T COAD 209190000 + 209189980 209190020 41 GTTTTTGTTTGTAGAACAAACCAAGACACTGATGTTTTTTG GTTTTTGTTTGTAGAACAAACCAAGATACTGATGTTTTTTG < 41bp 1 0.121222636481473 1 0.0904053151607513 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PIKFYVE ENSG00000115020 CDS Human protein_coding chr2:209190000 chr2:209190006 nonsynonymous SNV 0.965 4 27 hm5C_associated_SNPs_20253 0 0 1 0 1 PIKFYVE chr2:209189994 3'AG 209189994 Downstream 13bp
chr19 39215150 39215150 1 + G A COAD 39215157 + 39215137 39215177 41 GAGCACCTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGT GAGCACCTGCGCCACCAGTTCGCCAGCCAGGCCAATGTTGT < 41bp 1 0.711394993299504 1 0.670987606048584 experiment 0.577210013400992 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215157 chr19:39215150 nonsynonymous SNV 0.997 1 14 hm5C_associated_SNPs_20255 0 0 1 0 2 ACTN4 chr19:39215071 3'AG 39215071 Downstream 80bp
chr19 39215150 39215150 1 + G A COAD 39215157 + 39215137 39215177 41 GAGCACCTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGT GAGCACCTGCGCCACCAGTTCGCCAGCCAGGCCAATGTTGT < 41bp 1 0.711394993299504 1 0.670987606048584 experiment 0.577210013400992 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215157 chr19:39215150 nonsynonymous SNV 0.997 1 14 hm5C_associated_SNPs_20255 0 0 1 0 2 ACTN4 chr19:39215205 5'GT 39215205 Upstream 56bp
chr19 39215150 39215150 1 + G A COAD 39215163 + 39215143 39215183 41 CTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC CTGCGCCACCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC < 41bp 1 0.272062147695756 1 0.753510177135468 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215163 chr19:39215150 nonsynonymous SNV 0.997 1 8 hm5C_associated_SNPs_20256 0 0 1 0 2 ACTN4 chr19:39215071 3'AG 39215071 Downstream 80bp
chr19 39215150 39215150 1 + G A COAD 39215163 + 39215143 39215183 41 CTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC CTGCGCCACCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC < 41bp 1 0.272062147695756 1 0.753510177135468 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215163 chr19:39215150 nonsynonymous SNV 0.997 1 8 hm5C_associated_SNPs_20256 0 0 1 0 2 ACTN4 chr19:39215205 5'GT 39215205 Upstream 56bp
chr19 39215150 39215150 1 + G A COAD 39215169 + 39215149 39215189 41 CGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCCCTGGAT CACCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCCCTGGAT < 41bp 1 0.234754892708547 1 0.0907601416110992 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215169 chr19:39215150 nonsynonymous SNV 0.997 1 2 hm5C_associated_SNPs_20257 0 0 1 0 2 ACTN4 chr19:39215071 3'AG 39215071 Downstream 80bp
chr19 39215150 39215150 1 + G A COAD 39215169 + 39215149 39215189 41 CGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCCCTGGAT CACCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCCCTGGAT < 41bp 1 0.234754892708547 1 0.0907601416110992 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215169 chr19:39215150 nonsynonymous SNV 0.997 1 2 hm5C_associated_SNPs_20257 0 0 1 0 2 ACTN4 chr19:39215205 5'GT 39215205 Upstream 56bp
chr17 37676270 37676270 1 + T C COAD 37676272 + 37676252 37676292 41 CTAGATCCTAGTAAGCGGTGCACAGCTGAACAGACCCTACA CTAGATCCTAGTAAGCGGCGCACAGCTGAACAGACCCTACA < 41bp 1 0.191148507055652 1 0.105416268110275 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37676272 chr17:37676270 nonsynonymous SNV 0.995 4 19 hm5C_associated_SNPs_20259 0 0 1 0 1 CDK12 chr17:37676209 3'AG 37676209 Downstream 62bp
chr7 4002325 4002325 1 + C T COAD 4002345 + 4002325 4002365 41 CCATCTCCATCAGCAGGCTCCAGAATCCTCGATACAAAGTG TCATCTCCATCAGCAGGCTCCAGAATCCTCGATACAAAGTG < 41bp 1 0.213274127268501 1 0.450427293777466 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDK1 ENSG00000146555 CDS Human protein_coding chr7:4002345 chr7:4002325 nonsynonymous SNV 0.611 1 1 hm5C_associated_SNPs_20260 0 0 1 0 1 SDK1 chr7:4002289 3'AG 4002289 Downstream 37bp
chr6 31601226 31601226 1 + C T COAD 31601218 + 31601198 31601238 41 CCCACCTCCCAGCAGTTCTGCTGTCTTCCGCCTGGACCAAG CCCACCTCCCAGCAGTTCTGCTGTCTTCTGCCTGGACCAAG < 41bp 1 0.30637808319419 1 0.0874298810958862 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31601218 chr6:31601226 nonsynonymous SNV 0.999 3 29 hm5C_associated_SNPs_20262 0 0 1 0 1 PRRC2A chr6:31601156 3'AG 31601156 Downstream 71bp
chr7 75687295 75687295 1 + C T COAD 75687304 + 75687284 75687324 41 CAGGCATGACCCGGGACGACCTGTTCAACACCAATGCCACG CAGGCATGACCTGGGACGACCTGTTCAACACCAATGCCACG < 41bp 1 0.185380419897113 1 0.293315708637238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MDH2 ENSG00000146701 CDS Human protein_coding chr7:75687304 chr7:75687295 nonsynonymous SNV 0.966 5 12 hm5C_associated_SNPs_20263 0 0 1 0 1 MDH2 chr7:75687287 3'AG 75687287 Downstream 9bp
chr1 12009947 12009947 1 + A G COAD 12009955 + 12009935 12009975 41 GAGGATCTGGTCATTCTCTTCGCAGACAGGTAGGTGGGTCA GAGGATCTGGTCGTTCTCTTCGCAGACAGGTAGGTGGGTCA < 41bp 1 0.628944182635848 1 0.868554592132568 experiment 0.742111634728303 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12009955 chr1:12009947 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_20264 0 0 1 0 1 PLOD1 chr1:12009963 5'GT 12009963 Upstream 17bp
chr2 172951506 172951506 1 + G A COAD 172951509 + 172951489 172951529 41 CAGGCTTTGAACCGGAGGTTCCAGCAAACTCAGTACCTAGC CAGGCTTTGAACCGGAGATTCCAGCAAACTCAGTACCTAGC < 41bp 1 0.187101956463017 1 0.157639861106873 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DLX1 ENSG00000144355 CDS Human protein_coding chr2:172951509 chr2:172951506 synonymous SNV . 0 18 hm5C_associated_SNPs_20269 0 0 0 0 1 DLX1 chr2:172951581 5'GT 172951581 Upstream 76bp
chr7 77214878 77214878 1 + C T COAD 77214877 + 77214857 77214897 41 TAGATCATTGTAATGGCCTGCCGAGAATTTGAGATGGGAAG TAGATCATTGTAATGGCCTGCTGAGAATTTGAGATGGGAAG < 41bp 1 0.274276082835196 1 0.40167498588562 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77214877 chr7:77214878 stopgain 1.000 1 22 hm5C_associated_SNPs_20270 0 0 1 1 1 PTPN12 chr7:77214860 3'AG 77214860 Downstream 19bp
chr3 47046765 47046765 1 + C T COAD 47046776 + 47046756 47046796 41 TACCTCATCCGCGTGGAGCCCTTCACCTCCCTGCACGTCCA TACCTCATCTGCGTGGAGCCCTTCACCTCCCTGCACGTCCA < 41bp 1 0.248230574792923 1 0.194359838962555 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47046776 chr3:47046765 nonsynonymous SNV 0.982 5 10 hm5C_associated_SNPs_20271 0 0 1 0 2 NBEAL2 chr3:47046671 3'AG 47046671 Downstream 95bp
chr3 47046765 47046765 1 + C T COAD 47046776 + 47046756 47046796 41 TACCTCATCCGCGTGGAGCCCTTCACCTCCCTGCACGTCCA TACCTCATCTGCGTGGAGCCCTTCACCTCCCTGCACGTCCA < 41bp 1 0.248230574792923 1 0.194359838962555 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47046776 chr3:47046765 nonsynonymous SNV 0.982 5 10 hm5C_associated_SNPs_20271 0 0 1 0 2 NBEAL2 chr3:47046811 5'GT 47046811 Upstream 47bp
chr5 179146762 179146762 1 + C T COAD 179146752 + 179146732 179146772 41 TGATGAGCCTGAGTACGTACCTGATCCAGACGCAGAGAAAC TGATGAGCCTGAGTACGTACCTGATCCAGATGCAGAGAAAC < 41bp 1 0.380584226987507 1 0.0581400394439697 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179146752 chr5:179146762 synonymous SNV . 0 31 hm5C_associated_SNPs_20272 0 0 1 0 2 CANX chr5:179146669 3'AG 179146669 Downstream 94bp
chr5 179146762 179146762 1 + C T COAD 179146752 + 179146732 179146772 41 TGATGAGCCTGAGTACGTACCTGATCCAGACGCAGAGAAAC TGATGAGCCTGAGTACGTACCTGATCCAGATGCAGAGAAAC < 41bp 1 0.380584226987507 1 0.0581400394439697 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179146752 chr5:179146762 synonymous SNV . 0 31 hm5C_associated_SNPs_20272 0 0 1 0 2 CANX chr5:179146782 5'GT 179146782 Upstream 21bp
chr5 179146762 179146762 1 + C T COAD 179146764 + 179146744 179146784 41 GTACGTACCTGATCCAGACGCAGAGAAACCTGAGGATTGGT GTACGTACCTGATCCAGATGCAGAGAAACCTGAGGATTGGT < 41bp 1 0.477032036977418 1 0.690922558307648 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179146764 chr5:179146762 synonymous SNV . 0 19 hm5C_associated_SNPs_20273 0 0 1 0 2 CANX chr5:179146669 3'AG 179146669 Downstream 94bp
chr5 179146762 179146762 1 + C T COAD 179146764 + 179146744 179146784 41 GTACGTACCTGATCCAGACGCAGAGAAACCTGAGGATTGGT GTACGTACCTGATCCAGATGCAGAGAAACCTGAGGATTGGT < 41bp 1 0.477032036977418 1 0.690922558307648 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179146764 chr5:179146762 synonymous SNV . 0 19 hm5C_associated_SNPs_20273 0 0 1 0 2 CANX chr5:179146782 5'GT 179146782 Upstream 21bp
chr5 179146762 179146762 1 + C T COAD 179146773 + 179146753 179146793 41 TGATCCAGACGCAGAGAAACCTGAGGATTGGTAAGAACTTC TGATCCAGATGCAGAGAAACCTGAGGATTGGTAAGAACTTC < 41bp 1 0.69024785706616 1 0.362887024879456 experiment 0.619504285867679 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179146773 chr5:179146762 synonymous SNV . 0 10 hm5C_associated_SNPs_20274 0 0 1 0 2 CANX chr5:179146669 3'AG 179146669 Downstream 94bp
chr5 179146762 179146762 1 + C T COAD 179146773 + 179146753 179146793 41 TGATCCAGACGCAGAGAAACCTGAGGATTGGTAAGAACTTC TGATCCAGATGCAGAGAAACCTGAGGATTGGTAAGAACTTC < 41bp 1 0.69024785706616 1 0.362887024879456 experiment 0.619504285867679 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179146773 chr5:179146762 synonymous SNV . 0 10 hm5C_associated_SNPs_20274 0 0 1 0 2 CANX chr5:179146782 5'GT 179146782 Upstream 21bp
chr5 156816258 156816258 1 + C T COAD 156816259 + 156816239 156816279 41 CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTGAC CGGCTGTGCTGTGGCCTGTTCATGTTCGAGGTCATCCTGAC < 41bp 1 0.369536152042735 1 0.366831243038177 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816259 chr5:156816258 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_20275 0 0 0 0 1 CYFIP2 chr5:156816197 3'AG 156816197 Downstream 62bp
chr1 171519301 171519301 1 + T C COAD 171519315 + 171519295 171519335 41 TGGTTTTACTGAAGTGGTATCCAAAAAACAACAAAAACGTT TGGTTTCACTGAAGTGGTATCCAAAAAACAACAAAAACGTT < 41bp 1 0.0935775721244656 1 0.711390376091003 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171519315 chr1:171519301 synonymous SNV . 0 7 hm5C_associated_SNPs_20276 0 0 1 0 2 PRRC2C chr1:171519225 3'AG 171519225 Downstream 77bp
chr1 171519301 171519301 1 + T C COAD 171519315 + 171519295 171519335 41 TGGTTTTACTGAAGTGGTATCCAAAAAACAACAAAAACGTT TGGTTTCACTGAAGTGGTATCCAAAAAACAACAAAAACGTT < 41bp 1 0.0935775721244656 1 0.711390376091003 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171519315 chr1:171519301 synonymous SNV . 0 7 hm5C_associated_SNPs_20276 0 0 1 0 2 PRRC2C chr1:171519379 5'GT 171519379 Upstream 79bp
chr2 74086418 74086418 1 + A G COAD 74086431 + 74086411 74086451 41 AGTGTCGACCTACACACTCACTGCTCTTACCAGATGATGTT AGTGTCGGCCTACACACTCACTGCTCTTACCAGATGATGTT < 41bp 1 0.513596510359217 1 0.145746529102325 experiment 0.972806979281565 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STAMBP ENSG00000124356 CDS Human protein_coding chr2:74086431 chr2:74086418 nonsynonymous SNV 0.590 5 8 hm5C_associated_SNPs_20277 0 0 1 0 2 STAMBP chr2:74086381 3'AG 74086381 Downstream 38bp
chr2 74086418 74086418 1 + A G COAD 74086431 + 74086411 74086451 41 AGTGTCGACCTACACACTCACTGCTCTTACCAGATGATGTT AGTGTCGGCCTACACACTCACTGCTCTTACCAGATGATGTT < 41bp 1 0.513596510359217 1 0.145746529102325 experiment 0.972806979281565 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STAMBP ENSG00000124356 CDS Human protein_coding chr2:74086431 chr2:74086418 nonsynonymous SNV 0.590 5 8 hm5C_associated_SNPs_20277 0 0 1 0 2 STAMBP chr2:74086493 5'GT 74086493 Upstream 76bp
chr17 57644022 57644022 1 + T C COAD 57644036 + 57644016 57644056 41 AGGAACTACTCCAACTTTTCCTATTCAGAAACAAAGAAAAA AGGAACCACTCCAACTTTTCCTATTCAGAAACAAAGAAAAA < 41bp 1 0.110255316054699 1 0.0646267533302307 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX40 ENSG00000108406 CDS Human protein_coding chr17:57644036 chr17:57644022 synonymous SNV . 0 7 hm5C_associated_SNPs_20278 0 0 1 0 2 DHX40 chr17:57643988 3'AG 57643988 Downstream 35bp
chr17 57644022 57644022 1 + T C COAD 57644036 + 57644016 57644056 41 AGGAACTACTCCAACTTTTCCTATTCAGAAACAAAGAAAAA AGGAACCACTCCAACTTTTCCTATTCAGAAACAAAGAAAAA < 41bp 1 0.110255316054699 1 0.0646267533302307 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX40 ENSG00000108406 CDS Human protein_coding chr17:57644036 chr17:57644022 synonymous SNV . 0 7 hm5C_associated_SNPs_20278 0 0 1 0 2 DHX40 chr17:57644070 5'GT 57644070 Upstream 49bp
chr10 62547923 62547923 1 + A T COAD 62547929 + 62547909 62547949 41 ATGACAAAGGAACAATTAAACTGGCTGATTTTGGCCTTGCC ATGACAAAGGAACATTTAAACTGGCTGATTTTGGCCTTGCC < 41bp 1 0.792435378869003 1 0.209714561700821 experiment 0.415129242261994 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDK1 ENSG00000170312 CDS Human protein_coding chr10:62547929 chr10:62547923 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_20281 0 0 1 1 1 CDK1 chr10:62547992 5'GT 62547992 Upstream 70bp
chr1 46496755 46496755 1 + C T COAD 46496735 + 46496715 46496755 41 CACAGAGAGTGACTCAAGCCCTCCAATGACAGTGCGACGCC CACAGAGAGTGACTCAAGCCCTCCAATGACAGTGCGACGCT < 41bp 1 0.747410414177803 1 0.96817409992218 experiment 0.505179171644394 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MAST2 ENSG00000086015 CDS Human protein_coding chr1:46496735 chr1:46496755 nonsynonymous SNV 0.363 2 41 hm5C_associated_SNPs_20282 0 0 0 0 1 MAST2 chr1:46496679 3'AG 46496679 Downstream 77bp
chr14 35739797 35739797 1 + T C COAD 35739796 + 35739776 35739816 41 TTTCCAGGATCAAAACTAACCTTTCAGGTAATGGTACCTGT TTTCCAGGATCAAAACTAACCCTTCAGGTAATGGTACCTGT < 41bp 1 0.0286463761703007 1 0.0645766854286194 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIAA0391 ENSG00000100890;ENSG00000258790 CDS Human other chr14:35739796 chr14:35739797 nonsynonymous SNV 0.757 1 22 hm5C_associated_SNPs_20283 0 0 1 0 1 KIAA0391 chr14:35739802 5'GT 35739802 Upstream 6bp
chr2 238944554 238944554 1 + A G COAD 238944540 + 238944520 238944560 41 ATCTTTTGAATTTTGATGATCCACTGAATATTGAAGCTGCA ATCTTTTGAATTTTGATGATCCACTGAATATTGAGGCTGCA < 41bp 1 0.102883303471584 1 0.0441645383834839 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE2F ENSG00000184182;ENSG00000258984 CDS Human other chr2:238944540 chr2:238944554 synonymous SNV . 0 35 hm5C_associated_SNPs_20284 0 0 1 1 2 UBE2F chr2:238944519 3'AG 238944519 Downstream 36bp
chr2 238944554 238944554 1 + A G COAD 238944540 + 238944520 238944560 41 ATCTTTTGAATTTTGATGATCCACTGAATATTGAAGCTGCA ATCTTTTGAATTTTGATGATCCACTGAATATTGAGGCTGCA < 41bp 1 0.102883303471584 1 0.0441645383834839 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE2F ENSG00000184182;ENSG00000258984 CDS Human other chr2:238944540 chr2:238944554 synonymous SNV . 0 35 hm5C_associated_SNPs_20284 0 0 1 1 2 UBE2F chr2:238944581 5'GT 238944581 Upstream 28bp
chr1 36028881 36028881 1 + G A COAD 36028874 + 36028854 36028894 41 GATCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAGT GATCCTGATCAAGGAAGGGGCCCCCTCACTTCTGTGCAAGT < 41bp 1 0.0528160344274274 1 0.108620882034302 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028874 chr1:36028881 synonymous SNV . 0 28 hm5C_associated_SNPs_20285 0 0 1 0 1 NCDN chr1:36028803 3'AG 36028803 Downstream 79bp
chr1 36028881 36028881 1 + G A COAD 36028876 + 36028856 36028896 41 TCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAGTAT TCCTGATCAAGGAAGGGGCCCCCTCACTTCTGTGCAAGTAT < 41bp 1 0.0184048387446868 1 0.0658325552940369 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028876 chr1:36028881 synonymous SNV . 0 26 hm5C_associated_SNPs_20286 0 0 1 0 1 NCDN chr1:36028803 3'AG 36028803 Downstream 79bp
chr17 37070664 37070664 1 + C T COAD 37070657 + 37070637 37070677 41 GGAGCCAGAGCGTCGGGATTCACAGGACGGCAGCAGCTACC GGAGCCAGAGCGTCGGGATTCACAGGATGGCAGCAGCTACC < 41bp 1 0.764515209997049 1 0.263450145721436 experiment 0.470969580005903 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LASP1 ENSG00000002834 CDS Human protein_coding chr17:37070657 chr17:37070664 synonymous SNV . 0 28 hm5C_associated_SNPs_20287 0 0 1 0 2 LASP1 chr17:37070578 3'AG 37070578 Downstream 87bp
chr17 37070664 37070664 1 + C T COAD 37070657 + 37070637 37070677 41 GGAGCCAGAGCGTCGGGATTCACAGGACGGCAGCAGCTACC GGAGCCAGAGCGTCGGGATTCACAGGATGGCAGCAGCTACC < 41bp 1 0.764515209997049 1 0.263450145721436 experiment 0.470969580005903 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LASP1 ENSG00000002834 CDS Human protein_coding chr17:37070657 chr17:37070664 synonymous SNV . 0 28 hm5C_associated_SNPs_20287 0 0 1 0 2 LASP1 chr17:37070728 5'GT 37070728 Upstream 65bp
chr12 104340404 104340404 1 + C T COAD 104340419 + 104340399 104340439 41 CTATGCGAGTCAGAAGAAAACATTTGAAATTAATCCCAGAC CTATGTGAGTCAGAAGAAAACATTTGAAATTAATCCCAGAC < 41bp 1 0.107311617177927 1 0.223862409591675 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340419 chr12:104340404 nonsynonymous SNV 0.944 2 6 hm5C_associated_SNPs_20288 0 0 1 0 2 HSP90B1 chr12:104340396 3'AG 104340396 Downstream 9bp
chr12 104340404 104340404 1 + C T COAD 104340419 + 104340399 104340439 41 CTATGCGAGTCAGAAGAAAACATTTGAAATTAATCCCAGAC CTATGTGAGTCAGAAGAAAACATTTGAAATTAATCCCAGAC < 41bp 1 0.107311617177927 1 0.223862409591675 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340419 chr12:104340404 nonsynonymous SNV 0.944 2 6 hm5C_associated_SNPs_20288 0 0 1 0 2 HSP90B1 chr12:104340474 5'GT 104340474 Upstream 71bp
chr2 71795342 71795342 1 + G A COAD 71795352 + 71795332 71795372 41 GGGAACTGGGGCACAACGGGCCTCACCTACCCCAAGTTTTC GGGAACTGGGACACAACGGGCCTCACCTACCCCAAGTTTTC < 41bp 1 0.104549534295809 1 0.0532882809638977 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71795352 chr2:71795342 nonsynonymous SNV 1.000 5 11 hm5C_associated_SNPs_20289 0 0 0 0 1 DYSF chr2:71795302 3'AG 71795302 Downstream 41bp
chr5 76355504 76355504 1 + C T COAD 76355496 + 76355476 76355516 41 TCCAAAATATAAAGATAGAGCTGGAAAACGTAGGGAGCAGG TCCAAAATATAAAGATAGAGCTGGAAAATGTAGGGAGCAGG < 41bp 1 0.750457276898992 1 0.430005520582199 experiment 0.499085446202015 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76355496 chr5:76355504 nonsynonymous SNV 0.991 4 29 hm5C_associated_SNPs_20290 0 0 1 0 2 AGGF1 chr5:76355441 3'AG 76355441 Downstream 64bp
chr5 76355504 76355504 1 + C T COAD 76355496 + 76355476 76355516 41 TCCAAAATATAAAGATAGAGCTGGAAAACGTAGGGAGCAGG TCCAAAATATAAAGATAGAGCTGGAAAATGTAGGGAGCAGG < 41bp 1 0.750457276898992 1 0.430005520582199 experiment 0.499085446202015 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76355496 chr5:76355504 nonsynonymous SNV 0.991 4 29 hm5C_associated_SNPs_20290 0 0 1 0 2 AGGF1 chr5:76355568 5'GT 76355568 Upstream 65bp
chr5 76355504 76355504 1 + C T COAD 76355513 + 76355493 76355533 41 GAGCTGGAAAACGTAGGGAGCAGGTTGGAAGTGAAGGAACT GAGCTGGAAAATGTAGGGAGCAGGTTGGAAGTGAAGGAACT < 41bp 1 0.378704782602793 1 0.315804660320282 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76355513 chr5:76355504 nonsynonymous SNV 0.991 4 12 hm5C_associated_SNPs_20291 0 0 1 0 2 AGGF1 chr5:76355441 3'AG 76355441 Downstream 64bp
chr5 76355504 76355504 1 + C T COAD 76355513 + 76355493 76355533 41 GAGCTGGAAAACGTAGGGAGCAGGTTGGAAGTGAAGGAACT GAGCTGGAAAATGTAGGGAGCAGGTTGGAAGTGAAGGAACT < 41bp 1 0.378704782602793 1 0.315804660320282 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76355513 chr5:76355504 nonsynonymous SNV 0.991 4 12 hm5C_associated_SNPs_20291 0 0 1 0 2 AGGF1 chr5:76355568 5'GT 76355568 Upstream 65bp
chr15 69729055 69729055 1 + A G COAD 69729054 + 69729034 69729074 41 ATGATGATTGATGAGTTTAACAAACAATGTAAGGGCAAAAC ATGATGATTGATGAGTTTAACGAACAATGTAAGGGCAAAAC < 41bp 1 0.227814695618642 1 0.477668404579163 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69729054 chr15:69729055 nonsynonymous SNV 0.355 1 22 hm5C_associated_SNPs_20292 0 0 1 0 1 KIF23 chr15:69729061 5'GT 69729061 Upstream 7bp
chr17 27011893 27011893 1 + G T COAD 27011913 + 27011893 27011933 41 GGTGAAGGAGAAGTGACAGACTTCCTTCGACTGCCCCATTT TGTGAAGGAGAAGTGACAGACTTCCTTCGACTGCCCCATTT < 41bp 1 0.354211639997321 1 0.0717877447605133 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27011913 chr17:27011893 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_20295 0 0 1 0 1 SUPT6H chr17:27011862 3'AG 27011862 Downstream 32bp
chr2 202141605 202141605 1 + T C COAD 202141594 + 202141574 202141614 41 AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAATCA AAAAGCAAACCTCGGGGATACTGTCTGATCACCAACAATCA < 41bp 1 0.24630830274723 1 0.152496874332428 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CASP8 ENSG00000064012 CDS Human protein_coding chr2:202141594 chr2:202141605 nonsynonymous SNV 0.989 3 32 hm5C_associated_SNPs_20297 0 0 1 0 1 CASP8 chr2:202141550 3'AG 202141550 Downstream 56bp
chr5 65321796 65321796 1 + G A COAD 65321797 + 65321777 65321817 41 ATAATTACTTACAGCAGTTGCCCCCAGAGGTAATGTATTTT ATAATTACTTACAGCAGTTACCCCCAGAGGTAATGTATTTT < 41bp 1 0.0523851579764549 1 0.0542656779289246 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ERBIN ENSG00000112851 CDS Human protein_coding chr5:65321797 chr5:65321796 synonymous SNV . 0 20 hm5C_associated_SNPs_20298 0 0 1 0 1 ERBIN chr5:65321805 5'GT 65321805 Upstream 10bp
chr11 45926273 45926273 1 + C T COAD 45926276 + 45926256 45926296 41 TTGTCACCTGTAGATTGCCACCACCCGCCGGCTCACCGTGC TTGTCACCTGTAGATTGTCACCACCCGCCGGCTCACCGTGC < 41bp 1 0.0558214719953082 1 0.148487359285355 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926276 chr11:45926273 nonsynonymous SNV 0.988 1 18 hm5C_associated_SNPs_20300 0 0 0 0 1 MAPK8IP1 chr11:45926269 3'AG 45926269 Downstream 5bp
chr11 45926273 45926273 1 + C T COAD 45926280 + 45926260 45926300 41 CACCTGTAGATTGCCACCACCCGCCGGCTCACCGTGCACTT CACCTGTAGATTGTCACCACCCGCCGGCTCACCGTGCACTT < 41bp 1 0.101916640250703 1 0.0335186123847961 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926280 chr11:45926273 nonsynonymous SNV 0.988 1 14 hm5C_associated_SNPs_20301 0 0 0 0 1 MAPK8IP1 chr11:45926269 3'AG 45926269 Downstream 5bp
chr11 45926273 45926273 1 + C T COAD 45926291 + 45926271 45926311 41 TGCCACCACCCGCCGGCTCACCGTGCACTTTAACCCGCCCT TGTCACCACCCGCCGGCTCACCGTGCACTTTAACCCGCCCT < 41bp 1 0.155005126746354 1 0.320929080247879 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926291 chr11:45926273 nonsynonymous SNV 0.988 1 3 hm5C_associated_SNPs_20302 0 0 0 0 1 MAPK8IP1 chr11:45926269 3'AG 45926269 Downstream 5bp
chr11 64802605 64802605 1 + G A COAD 64802597 + 64802577 64802617 41 TCCTGCCACCCCCTCTGATCCCCACCCCGCCCCCTGATGAC TCCTGCCACCCCCTCTGATCCCCACCCCACCCCCTGATGAC < 41bp 1 0.100900695547811 1 0.045934796333313 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802597 chr11:64802605 synonymous SNV . 0 29 hm5C_associated_SNPs_20303 0 0 1 0 1 SNX15 chr11:64802678 5'GT 64802678 Upstream 74bp
chr11 64802605 64802605 1 + G A COAD 64802598 + 64802578 64802618 41 CCTGCCACCCCCTCTGATCCCCACCCCGCCCCCTGATGACC CCTGCCACCCCCTCTGATCCCCACCCCACCCCCTGATGACC < 41bp 1 0.0777654666138144 1 0.170918166637421 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802598 chr11:64802605 synonymous SNV . 0 28 hm5C_associated_SNPs_20304 0 0 1 0 1 SNX15 chr11:64802678 5'GT 64802678 Upstream 74bp
chr11 64802605 64802605 1 + G A COAD 64802599 + 64802579 64802619 41 CTGCCACCCCCTCTGATCCCCACCCCGCCCCCTGATGACCC CTGCCACCCCCTCTGATCCCCACCCCACCCCCTGATGACCC < 41bp 1 0.202712787404237 1 0.2653848528862 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802599 chr11:64802605 synonymous SNV . 0 27 hm5C_associated_SNPs_20305 0 0 1 0 1 SNX15 chr11:64802678 5'GT 64802678 Upstream 74bp
chr11 64802605 64802605 1 + G A COAD 64802601 + 64802581 64802621 41 GCCACCCCCTCTGATCCCCACCCCGCCCCCTGATGACCCCC GCCACCCCCTCTGATCCCCACCCCACCCCCTGATGACCCCC < 41bp 1 0.282346287865061 1 0.576901078224182 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802601 chr11:64802605 synonymous SNV . 0 25 hm5C_associated_SNPs_20306 0 0 1 0 1 SNX15 chr11:64802678 5'GT 64802678 Upstream 74bp
chr11 64802605 64802605 1 + G A COAD 64802602 + 64802582 64802622 41 CCACCCCCTCTGATCCCCACCCCGCCCCCTGATGACCCCCG CCACCCCCTCTGATCCCCACCCCACCCCCTGATGACCCCCG < 41bp 1 0.0536135867129301 1 0.579707980155945 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802602 chr11:64802605 synonymous SNV . 0 24 hm5C_associated_SNPs_20307 0 0 1 0 1 SNX15 chr11:64802678 5'GT 64802678 Upstream 74bp
chr11 64802605 64802605 1 + G A COAD 64802603 + 64802583 64802623 41 CACCCCCTCTGATCCCCACCCCGCCCCCTGATGACCCCCGG CACCCCCTCTGATCCCCACCCCACCCCCTGATGACCCCCGG < 41bp 1 0.0926727625896077 1 0.535406112670898 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802603 chr11:64802605 synonymous SNV . 0 23 hm5C_associated_SNPs_20308 0 0 1 0 1 SNX15 chr11:64802678 5'GT 64802678 Upstream 74bp
chr11 64802605 64802605 1 + G A COAD 64802604 + 64802584 64802624 41 ACCCCCTCTGATCCCCACCCCGCCCCCTGATGACCCCCGGC ACCCCCTCTGATCCCCACCCCACCCCCTGATGACCCCCGGC < 41bp 1 0.197577854980612 1 0.46421292424202 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802604 chr11:64802605 synonymous SNV . 0 22 hm5C_associated_SNPs_20309 0 0 1 0 1 SNX15 chr11:64802678 5'GT 64802678 Upstream 74bp
chrX 47518322 47518322 1 - G A COAD 47518340 - 47518320 47518360 41 GGTCTTCCCCCTCCCCACTCCCCAGGAGCCCATCATGGCGA GGTCTTCCCCCTCCCCACTCCCCAGGAGCCCATCATGGTGA < 41bp 1 0.426815257173605 1 0.511027812957764 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UXT ENSG00000126756 CDS Human protein_coding chrX:47518340 chrX:47518322 nonsynonymous SNV 0.999 1 39 hm5C_associated_SNPs_20316 0 0 1 0 2 UXT chrX:47518229 5'GT 47518229 Upstream 94bp
chrX 47518322 47518322 1 - G A COAD 47518340 - 47518320 47518360 41 GGTCTTCCCCCTCCCCACTCCCCAGGAGCCCATCATGGCGA GGTCTTCCCCCTCCCCACTCCCCAGGAGCCCATCATGGTGA < 41bp 1 0.426815257173605 1 0.511027812957764 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UXT ENSG00000126756 CDS Human protein_coding chrX:47518340 chrX:47518322 nonsynonymous SNV 0.999 1 39 hm5C_associated_SNPs_20316 0 0 1 0 2 UXT chrX:47518335 3'AG 47518335 Downstream 14bp
chr14 35579797 35579797 1 - T C COAD 35579783 - 35579763 35579803 41 ATTAAGAGAGGAATCAAGAGCTGTCTTTCTACAAAGAAAAA ATTAAGGGAGGAATCAAGAGCTGTCTTTCTACAAAGAAAAA < 41bp 1 0.216949184499864 1 0.126964718103409 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP2R3C ENSG00000092020 CDS Human protein_coding chr14:35579783 chr14:35579797 synonymous SNV . 0 7 hm5C_associated_SNPs_20317 0 0 1 0 2 PPP2R3C chr14:35579731 5'GT 35579731 Upstream 67bp
chr14 35579797 35579797 1 - T C COAD 35579783 - 35579763 35579803 41 ATTAAGAGAGGAATCAAGAGCTGTCTTTCTACAAAGAAAAA ATTAAGGGAGGAATCAAGAGCTGTCTTTCTACAAAGAAAAA < 41bp 1 0.216949184499864 1 0.126964718103409 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP2R3C ENSG00000092020 CDS Human protein_coding chr14:35579783 chr14:35579797 synonymous SNV . 0 7 hm5C_associated_SNPs_20317 0 0 1 0 2 PPP2R3C chr14:35579835 3'AG 35579835 Downstream 39bp
chr22 19492973 19492973 1 + G A COAD 19492963 + 19492943 19492983 41 CGGAACGAGGATGAGGAGAACACACTCTCCGTGGACTGCAC CGGAACGAGGATGAGGAGAACACACTCTCCATGGACTGCAC < 41bp 1 0.42057121455218 1 0.100354731082916 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19492963 chr22:19492973 nonsynonymous SNV 0.320 2 31 hm5C_associated_SNPs_20318 0 0 1 0 2 CDC45 chr22:19492885 3'AG 19492885 Downstream 89bp
chr22 19492973 19492973 1 + G A COAD 19492963 + 19492943 19492983 41 CGGAACGAGGATGAGGAGAACACACTCTCCGTGGACTGCAC CGGAACGAGGATGAGGAGAACACACTCTCCATGGACTGCAC < 41bp 1 0.42057121455218 1 0.100354731082916 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19492963 chr22:19492973 nonsynonymous SNV 0.320 2 31 hm5C_associated_SNPs_20318 0 0 1 0 2 CDC45 chr22:19493004 5'GT 19493004 Upstream 32bp
chr16 4902929 4902929 1 + C T COAD 4902930 + 4902910 4902950 41 TTGGTAGCCATGTCGGAGCCCCACAGGGTCCAGTTCACCTC TTGGTAGCCATGTCGGAGCTCCACAGGGTCCAGTTCACCTC < 41bp 1 0.435906320574566 1 0.417858600616455 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN1 ENSG00000118900 CDS Human protein_coding chr16:4902930 chr16:4902929 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_20320 0 0 1 0 1 UBN1 chr16:4902880 3'AG 4902880 Downstream 50bp
chr21 45736382 45736382 1 + C T COAD 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACGTGCAGCGGGGAGGGATGCCCTCTGCCTTCGACCGGATC < 41bp 1 0.0818261014507796 1 0.0711767077445984 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736382 nonsynonymous SNV 0.394 4 19 hm5C_associated_SNPs_20321 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 68bp
chr21 45736382 45736382 1 + C T COAD 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACGTGCAGCGGGGAGGGATGCCCTCTGCCTTCGACCGGATC < 41bp 1 0.0818261014507796 1 0.0711767077445984 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736382 nonsynonymous SNV 0.394 4 19 hm5C_associated_SNPs_20321 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 26bp
chr21 45736382 45736382 1 + C T COAD 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CGTGCAGCGGGGAGGGATGCCCTCTGCCTTCGACCGGATCC < 41bp 1 0.114063583481054 1 0.0476594567298889 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736382 nonsynonymous SNV 0.394 4 18 hm5C_associated_SNPs_20322 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 68bp
chr21 45736382 45736382 1 + C T COAD 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CGTGCAGCGGGGAGGGATGCCCTCTGCCTTCGACCGGATCC < 41bp 1 0.114063583481054 1 0.0476594567298889 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736382 nonsynonymous SNV 0.394 4 18 hm5C_associated_SNPs_20322 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 26bp
chr21 45736382 45736382 1 + C T COAD 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT GTGCAGCGGGGAGGGATGCCCTCTGCCTTCGACCGGATCCT < 41bp 1 0.428704248943339 1 0.265622556209564 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736382 nonsynonymous SNV 0.394 4 17 hm5C_associated_SNPs_20323 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 68bp
chr21 45736382 45736382 1 + C T COAD 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT GTGCAGCGGGGAGGGATGCCCTCTGCCTTCGACCGGATCCT < 41bp 1 0.428704248943339 1 0.265622556209564 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736382 nonsynonymous SNV 0.394 4 17 hm5C_associated_SNPs_20323 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 26bp
chr17 79414120 79414120 1 + C T COAD 79414114 + 79414094 79414134 41 GGCCTGGGCTTCTCCCTACCCTCAGACGTGCACTCTTCTAA GGCCTGGGCTTCTCCCTACCCTCAGATGTGCACTCTTCTAA < 41bp 1 0.398886823535925 1 0.411034524440765 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79414114 chr17:79414120 synonymous SNV . 0 27 hm5C_associated_SNPs_20324 0 0 1 0 1 BAHCC1 chr17:79414062 3'AG 79414062 Downstream 59bp
chr2 47205968 47205968 1 + G A COAD 47205958 + 47205938 47205978 41 ATAACAGCACGTCGAGGCATCTGAAAGGCTGTCACCCGCTT ATAACAGCACGTCGAGGCATCTGAAAGGCTATCACCCGCTT < 41bp 1 0.611246755052652 1 0.854187488555908 experiment 0.777506489894697 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47205958 chr2:47205968 nonsynonymous SNV 0.010 0 31 hm5C_associated_SNPs_20325 0 0 1 0 2 TTC7A chr2:47205931 3'AG 47205931 Downstream 38bp
chr2 47205968 47205968 1 + G A COAD 47205958 + 47205938 47205978 41 ATAACAGCACGTCGAGGCATCTGAAAGGCTGTCACCCGCTT ATAACAGCACGTCGAGGCATCTGAAAGGCTATCACCCGCTT < 41bp 1 0.611246755052652 1 0.854187488555908 experiment 0.777506489894697 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47205958 chr2:47205968 nonsynonymous SNV 0.010 0 31 hm5C_associated_SNPs_20325 0 0 1 0 2 TTC7A chr2:47206046 5'GT 47206046 Upstream 79bp
chr17 38318158 38318158 1 + C T COAD 38318147 + 38318127 38318167 41 GCACTGTGACTGGAGAGAGGCAAAGTGGGGACGGACAGGTT GCACTGTGACTGGAGAGAGGCAAAGTGGGGATGGACAGGTT < 41bp 1 0.576089849889054 1 0.74694299697876 experiment 0.847820300221893 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318147 chr17:38318158 synonymous SNV . 0 32 hm5C_associated_SNPs_20327 0 0 1 0 1 CASC3 chr17:38318164 5'GT 38318164 Upstream 7bp
chr16 83251054 83251054 1 + C T COAD 83251057 + 83251037 83251077 41 AATGAGAACACAGGGAGCGTCTCCGTGACACGGACCTTGGA AATGAGAACACAGGGAGTGTCTCCGTGACACGGACCTTGGA < 41bp 1 0.525910486562052 1 0.936938524246216 experiment 0.948179026875897 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:83251057 chr16:83251054 synonymous SNV . 0 18 hm5C_associated_SNPs_20330 0 0 0 0 1 CDH13 chr16:83251102 5'GT 83251102 Upstream 49bp
chr20 32665039 32665039 1 + C T COAD 32665025 + 32665005 32665045 41 ACGACGGCGATGAGGAAGGGCTCCTGACACACAGCGAGGAA ACGACGGCGATGAGGAAGGGCTCCTGACACACAGTGAGGAA < 41bp 1 0.526738015212847 1 0.204658627510071 experiment 0.946523969574305 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32665025 chr20:32665039 synonymous SNV . 0 35 hm5C_associated_SNPs_20333 0 0 1 0 1 RALY chr20:32665051 5'GT 32665051 Upstream 13bp
chr20 32665039 32665039 1 + C T COAD 32665027 + 32665007 32665047 41 GACGGCGATGAGGAAGGGCTCCTGACACACAGCGAGGAAGA GACGGCGATGAGGAAGGGCTCCTGACACACAGTGAGGAAGA < 41bp 1 0.525806496887512 1 0.130016654729843 experiment 0.948387006224977 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32665027 chr20:32665039 synonymous SNV . 0 33 hm5C_associated_SNPs_20334 0 0 1 0 1 RALY chr20:32665051 5'GT 32665051 Upstream 13bp
chr20 32665039 32665039 1 + C T COAD 32665034 + 32665014 32665054 41 ATGAGGAAGGGCTCCTGACACACAGCGAGGAAGAGCTGGTG ATGAGGAAGGGCTCCTGACACACAGTGAGGAAGAGCTGGTG < 41bp 1 0.788992938446317 1 0.307323843240738 experiment 0.422014123107366 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32665034 chr20:32665039 synonymous SNV . 0 26 hm5C_associated_SNPs_20335 0 0 1 0 1 RALY chr20:32665051 5'GT 32665051 Upstream 13bp
chr20 32665039 32665039 1 + C T COAD 32665036 + 32665016 32665056 41 GAGGAAGGGCTCCTGACACACAGCGAGGAAGAGCTGGTGAG GAGGAAGGGCTCCTGACACACAGTGAGGAAGAGCTGGTGAG < 41bp 1 0.697211950338757 1 0.410638839006424 experiment 0.605576099322487 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32665036 chr20:32665039 synonymous SNV . 0 24 hm5C_associated_SNPs_20336 0 0 1 0 1 RALY chr20:32665051 5'GT 32665051 Upstream 13bp
chr3 52237926 52237926 1 + G A COAD 52237938 + 52237918 52237958 41 TGAAAACCGATGGAGGGGATCCCAGTGGACTGCTGAAGAAC TGAAAACCAATGGAGGGGATCCCAGTGGACTGCTGAAGAAC < 41bp 1 0.310895163737215 1 0.156965434551239 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52237938 chr3:52237926 nonsynonymous SNV 0.190 1 9 hm5C_associated_SNPs_20337 0 0 1 0 1 ALAS1 chr3:52237879 3'AG 52237879 Downstream 48bp
chr15 57554304 57554304 1 + C T COAD 57554318 + 57554298 57554338 41 ACTCATCGGGAAGACTCTGTCAGTCTCAATGGCAATCATTC ACTCATTGGGAAGACTCTGTCAGTCTCAATGGCAATCATTC < 41bp 1 0.207275055842216 1 0.258539855480194 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554318 chr15:57554304 nonsynonymous SNV 0.998 3 7 hm5C_associated_SNPs_20341 0 0 1 0 1 TCF12 chr15:57554292 3'AG 57554292 Downstream 13bp
chr13 27216439 27216439 1 + G A COAD 27216436 + 27216416 27216456 41 AGTGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAG AGTGAAGAGGAACATTGAGCCCCAGCACTTGTGCCGGGGAG < 41bp 1 0.286057327431301 1 0.411589354276657 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216436 chr13:27216439 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_20343 0 0 1 0 1 WASF3 chr13:27216398 3'AG 27216398 Downstream 42bp
chr13 27216439 27216439 1 + G A COAD 27216437 + 27216417 27216457 41 GTGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGC GTGAAGAGGAACATTGAGCCCCAGCACTTGTGCCGGGGAGC < 41bp 1 0.137904988470083 1 0.496980339288712 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216437 chr13:27216439 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_20344 0 0 1 0 1 WASF3 chr13:27216398 3'AG 27216398 Downstream 42bp
chr13 27216439 27216439 1 + G A COAD 27216438 + 27216418 27216458 41 TGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCT TGAAGAGGAACATTGAGCCCCAGCACTTGTGCCGGGGAGCT < 41bp 1 0.514121038360233 1 0.475714147090912 experiment 0.971757923279533 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216438 chr13:27216439 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_20345 0 0 1 0 1 WASF3 chr13:27216398 3'AG 27216398 Downstream 42bp
chr13 27216439 27216439 1 + G A COAD 27216441 + 27216421 27216461 41 AGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCTCTG AGAGGAACATTGAGCCCCAGCACTTGTGCCGGGGAGCTCTG < 41bp 1 0.269299401409525 1 0.0953908264636993 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216441 chr13:27216439 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_20346 0 0 1 0 1 WASF3 chr13:27216398 3'AG 27216398 Downstream 42bp
chr13 27216439 27216439 1 + G A COAD 27216450 + 27216430 27216470 41 TTGAGCCCCGGCACTTGTGCCGGGGAGCTCTGCCTGAAGGG TTGAGCCCCAGCACTTGTGCCGGGGAGCTCTGCCTGAAGGG < 41bp 1 0.714594175706776 1 0.870404481887817 experiment 0.570811648586448 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216450 chr13:27216439 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_20347 0 0 1 0 1 WASF3 chr13:27216398 3'AG 27216398 Downstream 42bp
chr17 79668137 79668137 1 + G A COAD 79668148 + 79668128 79668168 41 CTACATCGCGGGGCAGCAGCCCATGTACCAGCAGGTGAGCC CTACATCGCAGGGCAGCAGCCCATGTACCAGCAGGTGAGCC < 41bp 1 0.176704058211066 1 0.35558420419693 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79668148 chr17:79668137 synonymous SNV . 0 10 hm5C_associated_SNPs_20348 0 0 1 0 2 HGS chr17:79668075 3'AG 79668075 Downstream 63bp
chr17 79668137 79668137 1 + G A COAD 79668148 + 79668128 79668168 41 CTACATCGCGGGGCAGCAGCCCATGTACCAGCAGGTGAGCC CTACATCGCAGGGCAGCAGCCCATGTACCAGCAGGTGAGCC < 41bp 1 0.176704058211066 1 0.35558420419693 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79668148 chr17:79668137 synonymous SNV . 0 10 hm5C_associated_SNPs_20348 0 0 1 0 2 HGS chr17:79668161 5'GT 79668161 Upstream 25bp
chr1 151237890 151237890 1 + G T COAD 151237878 + 151237858 151237898 41 TTTCCTCCCCAGGAGGTGAACACAGAAAAGCTGACAGCCTT TTTCCTCCCCAGGAGGTGAACACAGAAAAGCTTACAGCCTT < 41bp 1 0.670454026644106 1 0.391178101301193 experiment 0.659091946711787 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151237878 chr1:151237890 synonymous SNV . 0 33 hm5C_associated_SNPs_20349 0 0 0 0 1 PSMD4 chr1:151237870 3'AG 151237870 Downstream 21bp
chrX 70517238 70517238 1 + C T COAD 70517240 + 70517220 70517260 41 TTTTTAGATTTGATGAGGCGCCAAGAAGAACTTCGGAGGAT TTTTTAGATTTGATGAGGTGCCAAGAAGAACTTCGGAGGAT < 41bp 1 0.156609704190935 1 0.209668815135956 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NONO ENSG00000147140 CDS Human protein_coding chrX:70517240 chrX:70517238 nonsynonymous SNV 0.998 2 19 hm5C_associated_SNPs_20350 0 0 1 0 2 NONO chrX:70517227 3'AG 70517227 Downstream 12bp
chrX 70517238 70517238 1 + C T COAD 70517240 + 70517220 70517260 41 TTTTTAGATTTGATGAGGCGCCAAGAAGAACTTCGGAGGAT TTTTTAGATTTGATGAGGTGCCAAGAAGAACTTCGGAGGAT < 41bp 1 0.156609704190935 1 0.209668815135956 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NONO ENSG00000147140 CDS Human protein_coding chrX:70517240 chrX:70517238 nonsynonymous SNV 0.998 2 19 hm5C_associated_SNPs_20350 0 0 1 0 2 NONO chrX:70517311 5'GT 70517311 Upstream 74bp
chrX 70517238 70517238 1 + C T COAD 70517241 + 70517221 70517261 41 TTTTAGATTTGATGAGGCGCCAAGAAGAACTTCGGAGGATG TTTTAGATTTGATGAGGTGCCAAGAAGAACTTCGGAGGATG < 41bp 1 0.786247910068836 1 0.401810109615326 experiment 0.427504179862327 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NONO ENSG00000147140 CDS Human protein_coding chrX:70517241 chrX:70517238 nonsynonymous SNV 0.998 2 18 hm5C_associated_SNPs_20351 0 0 1 0 2 NONO chrX:70517227 3'AG 70517227 Downstream 12bp
chrX 70517238 70517238 1 + C T COAD 70517241 + 70517221 70517261 41 TTTTAGATTTGATGAGGCGCCAAGAAGAACTTCGGAGGATG TTTTAGATTTGATGAGGTGCCAAGAAGAACTTCGGAGGATG < 41bp 1 0.786247910068836 1 0.401810109615326 experiment 0.427504179862327 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NONO ENSG00000147140 CDS Human protein_coding chrX:70517241 chrX:70517238 nonsynonymous SNV 0.998 2 18 hm5C_associated_SNPs_20351 0 0 1 0 2 NONO chrX:70517311 5'GT 70517311 Upstream 74bp
chrX 70517238 70517238 1 + C T COAD 70517253 + 70517233 70517273 41 TGAGGCGCCAAGAAGAACTTCGGAGGATGGAAGAGCTGCAC TGAGGTGCCAAGAAGAACTTCGGAGGATGGAAGAGCTGCAC < 41bp 1 0.66215627730128 1 0.837612211704254 experiment 0.675687445397441 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517253 chrX:70517238 nonsynonymous SNV 0.998 2 6 hm5C_associated_SNPs_20352 0 0 1 0 2 NONO chrX:70517227 3'AG 70517227 Downstream 12bp
chrX 70517238 70517238 1 + C T COAD 70517253 + 70517233 70517273 41 TGAGGCGCCAAGAAGAACTTCGGAGGATGGAAGAGCTGCAC TGAGGTGCCAAGAAGAACTTCGGAGGATGGAAGAGCTGCAC < 41bp 1 0.66215627730128 1 0.837612211704254 experiment 0.675687445397441 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517253 chrX:70517238 nonsynonymous SNV 0.998 2 6 hm5C_associated_SNPs_20352 0 0 1 0 2 NONO chrX:70517311 5'GT 70517311 Upstream 74bp
chr11 73068163 73068163 1 + C T COAD 73068165 + 73068145 73068185 41 AAGTCAGGCTCCCTGCGGCGCAGCTCCATGAGCCTGTGAGT AAGTCAGGCTCCCTGCGGTGCAGCTCCATGAGCCTGTGAGT < 41bp 1 0.110406832491195 1 0.0318382978439331 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73068165 chr11:73068163 nonsynonymous SNV 0.998 2 19 hm5C_associated_SNPs_20353 0 0 1 0 2 ARHGEF17 chr11:73068070 3'AG 73068070 Downstream 94bp
chr11 73068163 73068163 1 + C T COAD 73068165 + 73068145 73068185 41 AAGTCAGGCTCCCTGCGGCGCAGCTCCATGAGCCTGTGAGT AAGTCAGGCTCCCTGCGGTGCAGCTCCATGAGCCTGTGAGT < 41bp 1 0.110406832491195 1 0.0318382978439331 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73068165 chr11:73068163 nonsynonymous SNV 0.998 2 19 hm5C_associated_SNPs_20353 0 0 1 0 2 ARHGEF17 chr11:73068179 5'GT 73068179 Upstream 17bp
chr12 112926260 112926260 1 + C T COAD 112926274 + 112926254 112926294 41 ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTTAT ATTGGCTGGACAGGGACGTTCATTGTGATTGATATTCTTAT < 41bp 1 0.147707421963071 1 0.022661954164505 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926274 chr12:112926260 nonsynonymous SNV 1.000 5 7 hm5C_associated_SNPs_20354 0 0 1 0 2 PTPN11 chr12:112926247 3'AG 112926247 Downstream 14bp
chr12 112926260 112926260 1 + C T COAD 112926274 + 112926254 112926294 41 ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTTAT ATTGGCTGGACAGGGACGTTCATTGTGATTGATATTCTTAT < 41bp 1 0.147707421963071 1 0.022661954164505 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926274 chr12:112926260 nonsynonymous SNV 1.000 5 7 hm5C_associated_SNPs_20354 0 0 1 0 2 PTPN11 chr12:112926314 5'GT 112926314 Upstream 55bp
chr3 10123065 10123065 1 + A G COAD 10123048 + 10123028 10123068 41 AGTGTTTAGCTGCTGAGAATCACGGTGTAGTTGATGGACCA AGTGTTTAGCTGCTGAGAATCACGGTGTAGTTGATGGGCCA < 41bp 1 0.687113329835146 1 0.851265788078308 experiment 0.625773340329707 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10123048 chr3:10123065 synonymous SNV . 0 38 hm5C_associated_SNPs_20355 0 0 1 0 1 FANCD2 chr3:10123148 5'GT 10123148 Upstream 84bp
chrX 105855866 105855866 1 + A C COAD 105855849 + 105855829 105855869 41 CCAGGAGAAACCAGAGAGGCCTTTAAGAGGCGGGAAGAGTC CCAGGAGAAACCAGAGAGGCCTTTAAGAGGCGGGAAGCGTC < 41bp 1 0.241011602969578 1 0.0947081446647644 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105855849 chrX:105855866 nonsynonymous SNV 0.998 1 38 hm5C_associated_SNPs_20356 0 0 0 0 1 CXorf57 chrX:105855953 5'GT 105855953 Upstream 88bp
chr19 38780810 38780810 1 + G A COAD 38780801 + 38780781 38780821 41 CACTGGGCCTTGCCGTGCATCCTTCCCACGCTGGTACTTTG CACTGGGCCTTGCCGTGCATCCTTCCCACACTGGTACTTTG < 41bp 1 0.0149712939339739 1 0.0782611966133118 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPINT2 ENSG00000167642;ENSG00000267748 CDS Human other chr19:38780801 chr19:38780810 nonsynonymous SNV 0.981 4 30 hm5C_associated_SNPs_20357 0 0 1 0 1 SPINT2 chr19:38780759 3'AG 38780759 Downstream 52bp
chr19 36594064 36594064 1 + G T COAD 36594068 + 36594048 36594088 41 GTGCCTGCAGGTCCTCGCTGCAGGGAAGGCTGAAGAGACCC GTGCCTGCAGGTCCTCTCTGCAGGGAAGGCTGAAGAGACCC < 41bp 1 0.65206291861407 1 0.85818076133728 experiment 0.695874162771861 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36594068 chr19:36594064 nonsynonymous SNV 0.015 0 17 hm5C_associated_SNPs_20359 0 0 1 0 2 WDR62 chr19:36594058 3'AG 36594058 Downstream 7bp
chr19 36594064 36594064 1 + G T COAD 36594068 + 36594048 36594088 41 GTGCCTGCAGGTCCTCGCTGCAGGGAAGGCTGAAGAGACCC GTGCCTGCAGGTCCTCTCTGCAGGGAAGGCTGAAGAGACCC < 41bp 1 0.65206291861407 1 0.85818076133728 experiment 0.695874162771861 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36594068 chr19:36594064 nonsynonymous SNV 0.015 0 17 hm5C_associated_SNPs_20359 0 0 1 0 2 WDR62 chr19:36594109 5'GT 36594109 Upstream 46bp
chr7 150761824 150761824 1 + G A COAD 150761806 + 150761786 150761826 41 GCCAGCGAGGCTGAGGGGGCCCGGGCTCTCACTCAGCCGTC GCCAGCGAGGCTGAGGGGGCCCGGGCTCTCACTCAGCCATC < 41bp 1 0.55175495202526 1 0.439953625202179 experiment 0.896490095949479 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150761806 chr7:150761824 synonymous SNV . 0 39 hm5C_associated_SNPs_20360 0 0 1 0 1 SLC4A2 chr7:150761854 5'GT 150761854 Upstream 31bp
chr19 11141504 11141504 1 + C T COAD 11141506 + 11141486 11141526 41 AGCACCCGGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGGC AGCACCCGGGCTGGGGGGTTCGGCCTGAACCTCCAGTCGGC < 41bp 1 0.46091602095854 1 0.742279052734375 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141506 chr19:11141504 nonsynonymous SNV 0.981 4 19 hm5C_associated_SNPs_20361 0 0 1 0 2 SMARCA4 chr19:11141406 3'AG 11141406 Downstream 99bp
chr19 11141504 11141504 1 + C T COAD 11141506 + 11141486 11141526 41 AGCACCCGGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGGC AGCACCCGGGCTGGGGGGTTCGGCCTGAACCTCCAGTCGGC < 41bp 1 0.46091602095854 1 0.742279052734375 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141506 chr19:11141504 nonsynonymous SNV 0.981 4 19 hm5C_associated_SNPs_20361 0 0 1 0 2 SMARCA4 chr19:11141569 5'GT 11141569 Upstream 66bp
chr16 1818241 1818241 1 + G T COAD 1818253 + 1818233 1818273 41 CCCGTCCCGGGGGCATCATCCACGTGTATGGCGATGACAGC CCCGTCCCTGGGGCATCATCCACGTGTATGGCGATGACAGC < 41bp 1 0.472304644992073 1 0.62525337934494 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1818253 chr16:1818241 nonsynonymous SNV 0.834 4 9 hm5C_associated_SNPs_20362 0 0 1 0 1 MAPK8IP3 chr16:1818200 3'AG 1818200 Downstream 42bp
chr17 1637429 1637429 1 + G A COAD 1637447 + 1637427 1637467 41 GCGTCTTCTTCGTGGGCCAGCTTGAGGCCCCGCAGCACGTG GCATCTTCTTCGTGGGCCAGCTTGAGGCCCCGCAGCACGTG < 41bp 1 0.554039521671953 1 0.260300844907761 experiment 0.891920956656093 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1637447 chr17:1637429 nonsynonymous SNV 0.873 0 3 hm5C_associated_SNPs_20363 0 0 0 0 1 WDR81 chr17:1637510 5'GT 1637510 Upstream 82bp
chr10 75548512 75548512 1 + C A COAD 75548529 + 75548509 75548549 41 ACCCACCAGTGCCTGAGCAGCTACAGCTCCGAATTGCTTTT ACCAACCAGTGCCTGAGCAGCTACAGCTCCGAATTGCTTTT < 41bp 1 0.585925451270077 1 0.479830294847488 experiment 0.828149097459846 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75548529 chr10:75548512 nonsynonymous SNV 0.996 2 4 hm5C_associated_SNPs_20364 0 0 0 0 2 ZSWIM8 chr10:75548428 3'AG 75548428 Downstream 85bp
chr10 75548512 75548512 1 + C A COAD 75548529 + 75548509 75548549 41 ACCCACCAGTGCCTGAGCAGCTACAGCTCCGAATTGCTTTT ACCAACCAGTGCCTGAGCAGCTACAGCTCCGAATTGCTTTT < 41bp 1 0.585925451270077 1 0.479830294847488 experiment 0.828149097459846 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75548529 chr10:75548512 nonsynonymous SNV 0.996 2 4 hm5C_associated_SNPs_20364 0 0 0 0 2 ZSWIM8 chr10:75548581 5'GT 75548581 Upstream 70bp
chr8 145736255 145736255 1 + G A COAD 145736271 + 145736251 145736291 41 ATGCGCTGCAGCCAGCTGGCCCCCAGGGCCCTGCAGGTGAG ATGCACTGCAGCCAGCTGGCCCCCAGGGCCCTGCAGGTGAG < 41bp 1 0.375765449953392 1 0.324513167142868 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145736271 chr8:145736255 nonsynonymous SNV 0.990 0 5 hm5C_associated_SNPs_20366 0 0 1 0 1 MFSD3 chr8:145736286 5'GT 145736286 Upstream 32bp
chr9 131247109 131247109 1 + C T COAD 131247090 + 131247070 131247110 41 AAAGAGAGCTTGAAGAAGGCCATCCGAGCCCAGAAGGAGCG AAAGAGAGCTTGAAGAAGGCCATCCGAGCCCAGAAGGAGTG < 41bp 1 0.170690928195931 1 0.153223872184753 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ODF2 ENSG00000136811 CDS Human protein_coding chr9:131247090 chr9:131247109 stopgain 1.000 1 40 hm5C_associated_SNPs_20368 0 0 1 0 1 ODF2 chr9:131247165 5'GT 131247165 Upstream 57bp
chr9 131247109 131247109 1 + C T COAD 131247094 + 131247074 131247114 41 AGAGCTTGAAGAAGGCCATCCGAGCCCAGAAGGAGCGAGCC AGAGCTTGAAGAAGGCCATCCGAGCCCAGAAGGAGTGAGCC < 41bp 1 0.337286493469185 1 0.421514242887497 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ODF2 ENSG00000136811 CDS Human protein_coding chr9:131247094 chr9:131247109 stopgain 1.000 1 36 hm5C_associated_SNPs_20369 0 0 1 0 1 ODF2 chr9:131247165 5'GT 131247165 Upstream 57bp
chr10 51863874 51863874 1 + G A COAD 51863880 + 51863860 51863900 41 AGCTCCCCACGTTGGTTTCCCTGTTTGATGATGAAGATGAA AGCTCCCCACGTTGATTTCCCTGTTTGATGATGAAGATGAA < 41bp 1 0.126735141358839 1 0.0665976703166962 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WASHC2A ENSG00000099290 CDS Human protein_coding chr10:51863880 chr10:51863874 nonsynonymous SNV 0.285 1 15 hm5C_associated_SNPs_20370 0 0 1 0 2 WASHC2A chr10:51863802 3'AG 51863802 Downstream 73bp
chr10 51863874 51863874 1 + G A COAD 51863880 + 51863860 51863900 41 AGCTCCCCACGTTGGTTTCCCTGTTTGATGATGAAGATGAA AGCTCCCCACGTTGATTTCCCTGTTTGATGATGAAGATGAA < 41bp 1 0.126735141358839 1 0.0665976703166962 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WASHC2A ENSG00000099290 CDS Human protein_coding chr10:51863880 chr10:51863874 nonsynonymous SNV 0.285 1 15 hm5C_associated_SNPs_20370 0 0 1 0 2 WASHC2A chr10:51863903 5'GT 51863903 Upstream 30bp
chr6 74502407 74502407 1 + C T COAD 74502417 + 74502397 74502437 41 TGCCTTATGGCTGTGGTGAACAGAACATGATAAATTTTGCT TGCCTTATGGTTGTGGTGAACAGAACATGATAAATTTTGCT < 41bp 1 0.383953286960165 1 0.454790830612183 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD109 ENSG00000156535 CDS Human protein_coding chr6:74502417 chr6:74502407 synonymous SNV . 0 11 hm5C_associated_SNPs_20372 0 0 0 0 1 CD109 chr6:74502349 3'AG 74502349 Downstream 59bp
chr16 30664136 30664136 1 + G A COAD 30664142 + 30664122 30664162 41 TGCCTCGCCACCCCGGCAGGCCGGGTGGTCCTCGCAGGCCA TGCCTCGCCACCCCAGCAGGCCGGGTGGTCCTCGCAGGCCA < 41bp 1 0.701180482601629 1 0.555185496807098 experiment 0.597639034796742 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRR14 ENSG00000156858 CDS Human protein_coding chr16:30664142 chr16:30664136 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_20373 0 0 1 0 2 PRR14 chr16:30664042 3'AG 30664042 Downstream 95bp
chr16 30664136 30664136 1 + G A COAD 30664142 + 30664122 30664162 41 TGCCTCGCCACCCCGGCAGGCCGGGTGGTCCTCGCAGGCCA TGCCTCGCCACCCCAGCAGGCCGGGTGGTCCTCGCAGGCCA < 41bp 1 0.701180482601629 1 0.555185496807098 experiment 0.597639034796742 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRR14 ENSG00000156858 CDS Human protein_coding chr16:30664142 chr16:30664136 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_20373 0 0 1 0 2 PRR14 chr16:30664163 5'GT 30664163 Upstream 28bp
chr14 23794460 23794460 1 + C T COAD 23794459 + 23794439 23794479 41 CTCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCATG CTCCTTCTTTCTTCCAGGGGCTGGGCTAGAGCGACATCATG < 41bp 1 0.468807333832895 1 0.126746952533722 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23794459 chr14:23794460 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_20374 0 0 1 0 1 BCL2L2-PABPN1;PABPN1 chr14:23794456 3'AG 23794456 Downstream 5bp
chr12 551007 551007 1 + G A COAD 551010 + 550990 551030 41 CCGTGACAGCAATAGACGGGCACATAAGATACAAGGAGAAC CCGTGACAGCAATAGACAGGCACATAAGATACAAGGAGAAC < 41bp 1 0.32901086987511 1 0.121663391590118 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC77 ENSG00000120647 CDS Human protein_coding chr12:551010 chr12:551007 nonsynonymous SNV 0.953 2 18 hm5C_associated_SNPs_20375 0 0 1 0 1 CCDC77 chr12:550940 3'AG 550940 Downstream 68bp
chr17 78090772 78090772 1 + C A COAD 78090785 + 78090765 78090805 41 AGGTTCCCCAAGGACTCTAGCACCTGGACTGTGGACCACCA AGGTTCCACAAGGACTCTAGCACCTGGACTGTGGACCACCA < 41bp 1 0.418339952281631 1 0.141388833522797 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78090785 chr17:78090772 nonsynonymous SNV 0.450 5 8 hm5C_associated_SNPs_20376 0 0 1 0 1 GAA chr17:78090767 3'AG 78090767 Downstream 6bp
chr11 45882546 45882546 1 + C T COAD 45882565 + 45882545 45882585 41 ACGACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGT ATGACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGT < 41bp 1 0.0251669975465308 1 0.0463276505470276 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45882565 chr11:45882546 synonymous SNV . 0 2 hm5C_associated_SNPs_20378 0 0 1 0 1 CRY2 chr11:45882583 5'GT 45882583 Upstream 38bp
chr11 45882546 45882546 1 + C T COAD 45882566 + 45882546 45882586 41 CGACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGTG TGACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGTG < 41bp 1 0.0451407054253739 1 0.052418977022171 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45882566 chr11:45882546 synonymous SNV . 0 1 hm5C_associated_SNPs_20379 0 0 1 0 1 CRY2 chr11:45882583 5'GT 45882583 Upstream 38bp
chr17 78079646 78079646 1 + G T COAD 78079642 + 78079622 78079662 41 ACTCTACAGCGTGGAGTTCTCCGAGGAGCCCTTCGGGGTGA ACTCTACAGCGTGGAGTTCTCCGATGAGCCCTTCGGGGTGA < 41bp 1 0.656459040459782 1 0.651852548122406 experiment 0.687081919080436 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GAA ENSG00000171298 CDS Human protein_coding chr17:78079642 chr17:78079646 nonsynonymous SNV 0.962 1 25 hm5C_associated_SNPs_20380 0 0 1 0 2 GAA chr17:78079548 3'AG 78079548 Downstream 99bp
chr17 78079646 78079646 1 + G T COAD 78079642 + 78079622 78079662 41 ACTCTACAGCGTGGAGTTCTCCGAGGAGCCCTTCGGGGTGA ACTCTACAGCGTGGAGTTCTCCGATGAGCCCTTCGGGGTGA < 41bp 1 0.656459040459782 1 0.651852548122406 experiment 0.687081919080436 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GAA ENSG00000171298 CDS Human protein_coding chr17:78079642 chr17:78079646 nonsynonymous SNV 0.962 1 25 hm5C_associated_SNPs_20380 0 0 1 0 2 GAA chr17:78079693 5'GT 78079693 Upstream 48bp
chr7 72409183 72409183 1 + C T COAD 72409185 + 72409165 72409205 41 TCTAGCCCAGCCTCCTCCCGCTCCCAGACACCGGAGAGGCC TCTAGCCCAGCCTCCTCCTGCTCCCAGACACCGGAGAGGCC < 41bp 1 0.0969434426188042 1 0.140928268432617 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POM121 ENSG00000196313 CDS Human protein_coding chr7:72409185 chr7:72409183 nonsynonymous SNV 0.841 0 19 hm5C_associated_SNPs_20381 0 0 1 0 2 POM121 chr7:72409129 3'AG 72409129 Downstream 55bp
chr7 72409183 72409183 1 + C T COAD 72409185 + 72409165 72409205 41 TCTAGCCCAGCCTCCTCCCGCTCCCAGACACCGGAGAGGCC TCTAGCCCAGCCTCCTCCTGCTCCCAGACACCGGAGAGGCC < 41bp 1 0.0969434426188042 1 0.140928268432617 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POM121 ENSG00000196313 CDS Human protein_coding chr7:72409185 chr7:72409183 nonsynonymous SNV 0.841 0 19 hm5C_associated_SNPs_20381 0 0 1 0 2 POM121 chr7:72409220 5'GT 72409220 Upstream 38bp
chr16 56867237 56867237 1 + C T COAD 56867224 + 56867204 56867244 41 GCAGTTGCCTTTCTTTTCCGCATGGAGCGGCTGCGCTGCCA GCAGTTGCCTTTCTTTTCCGCATGGAGCGGCTGTGCTGCCA < 41bp 1 0.471000918657349 1 0.299403160810471 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP93 ENSG00000102900 CDS Human protein_coding chr16:56867224 chr16:56867237 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_20382 0 0 1 0 1 NUP93 chr16:56867318 5'GT 56867318 Upstream 82bp
chr11 64022440 64022440 1 + T C COAD 64022456 + 64022436 64022476 41 ACGGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTT ACGGCGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTT < 41bp 1 0.363774620565953 1 0.0838344693183899 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022456 chr11:64022440 nonsynonymous SNV 0.994 3 5 hm5C_associated_SNPs_20383 0 0 1 0 3 PLCB3 chr11:64022370 3'AG 64022370 Downstream 71bp
chr11 64022440 64022440 1 + T C COAD 64022456 + 64022436 64022476 41 ACGGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTT ACGGCGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTT < 41bp 1 0.363774620565953 1 0.0838344693183899 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022456 chr11:64022440 nonsynonymous SNV 0.994 3 5 hm5C_associated_SNPs_20383 0 0 1 0 3 PLCB3 chr11:64022424 3'AG 64022424 Downstream 17bp
chr11 64022440 64022440 1 + T C COAD 64022456 + 64022436 64022476 41 ACGGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTT ACGGCGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTT < 41bp 1 0.363774620565953 1 0.0838344693183899 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022456 chr11:64022440 nonsynonymous SNV 0.994 3 5 hm5C_associated_SNPs_20383 0 0 1 0 3 PLCB3 chr11:64022510 5'GT 64022510 Upstream 71bp
chr11 64022440 64022440 1 + T C COAD 64022457 + 64022437 64022477 41 CGGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTTG CGGCGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTTG < 41bp 1 0.328854510332004 1 0.538246393203735 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022457 chr11:64022440 nonsynonymous SNV 0.994 3 4 hm5C_associated_SNPs_20384 0 0 1 0 3 PLCB3 chr11:64022370 3'AG 64022370 Downstream 71bp
chr11 64022440 64022440 1 + T C COAD 64022457 + 64022437 64022477 41 CGGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTTG CGGCGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTTG < 41bp 1 0.328854510332004 1 0.538246393203735 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022457 chr11:64022440 nonsynonymous SNV 0.994 3 4 hm5C_associated_SNPs_20384 0 0 1 0 3 PLCB3 chr11:64022424 3'AG 64022424 Downstream 17bp
chr11 64022440 64022440 1 + T C COAD 64022457 + 64022437 64022477 41 CGGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTTG CGGCGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTTG < 41bp 1 0.328854510332004 1 0.538246393203735 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022457 chr11:64022440 nonsynonymous SNV 0.994 3 4 hm5C_associated_SNPs_20384 0 0 1 0 3 PLCB3 chr11:64022510 5'GT 64022510 Upstream 71bp
chr11 64022440 64022440 1 + T C COAD 64022458 + 64022438 64022478 41 GGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTTGA GGCGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTTGA < 41bp 1 0.597332201055009 1 0.796933710575104 experiment 0.805335597889982 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022458 chr11:64022440 nonsynonymous SNV 0.994 3 3 hm5C_associated_SNPs_20385 0 0 1 0 3 PLCB3 chr11:64022370 3'AG 64022370 Downstream 71bp
chr11 64022440 64022440 1 + T C COAD 64022458 + 64022438 64022478 41 GGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTTGA GGCGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTTGA < 41bp 1 0.597332201055009 1 0.796933710575104 experiment 0.805335597889982 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022458 chr11:64022440 nonsynonymous SNV 0.994 3 3 hm5C_associated_SNPs_20385 0 0 1 0 3 PLCB3 chr11:64022424 3'AG 64022424 Downstream 17bp
chr11 64022440 64022440 1 + T C COAD 64022458 + 64022438 64022478 41 GGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTTGA GGCGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTTGA < 41bp 1 0.597332201055009 1 0.796933710575104 experiment 0.805335597889982 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022458 chr11:64022440 nonsynonymous SNV 0.994 3 3 hm5C_associated_SNPs_20385 0 0 1 0 3 PLCB3 chr11:64022510 5'GT 64022510 Upstream 71bp
chr19 17424898 17424898 1 + G A COAD 17424890 + 17424870 17424910 41 CAATTTTAGTCGATTTCACGCGGACTCCGTGTGCAAAGCCT CAATTTTAGTCGATTTCACGCGGACTCCATGTGCAAAGCCT < 41bp 1 0.200047409533456 1 0.180500090122223 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDA1 ENSG00000130311 CDS Human protein_coding chr19:17424890 chr19:17424898 nonsynonymous SNV 0.923 0 29 hm5C_associated_SNPs_20386 0 0 1 0 2 DDA1 chr19:17424832 3'AG 17424832 Downstream 67bp
chr19 17424898 17424898 1 + G A COAD 17424890 + 17424870 17424910 41 CAATTTTAGTCGATTTCACGCGGACTCCGTGTGCAAAGCCT CAATTTTAGTCGATTTCACGCGGACTCCATGTGCAAAGCCT < 41bp 1 0.200047409533456 1 0.180500090122223 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDA1 ENSG00000130311 CDS Human protein_coding chr19:17424890 chr19:17424898 nonsynonymous SNV 0.923 0 29 hm5C_associated_SNPs_20386 0 0 1 0 2 DDA1 chr19:17424912 5'GT 17424912 Upstream 15bp
chr3 14508088 14508088 1 + C T COAD 14508078 + 14508058 14508098 41 TGCTCCTGGTGCTGCTGGTCCGAGGGCTGACGCTGCCGGGC TGCTCCTGGTGCTGCTGGTCCGAGGGCTGATGCTGCCGGGC < 41bp 1 0.798882694241657 1 0.954917550086975 experiment 0.402234611516685 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14508078 chr3:14508088 nonsynonymous SNV 0.852 3 31 hm5C_associated_SNPs_20387 0 0 1 0 2 SLC6A6 chr3:14508024 3'AG 14508024 Downstream 65bp
chr3 14508088 14508088 1 + C T COAD 14508078 + 14508058 14508098 41 TGCTCCTGGTGCTGCTGGTCCGAGGGCTGACGCTGCCGGGC TGCTCCTGGTGCTGCTGGTCCGAGGGCTGATGCTGCCGGGC < 41bp 1 0.798882694241657 1 0.954917550086975 experiment 0.402234611516685 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14508078 chr3:14508088 nonsynonymous SNV 0.852 3 31 hm5C_associated_SNPs_20387 0 0 1 0 2 SLC6A6 chr3:14508158 5'GT 14508158 Upstream 71bp
chr16 30664157 30664157 1 + A C COAD 30664142 + 30664122 30664162 41 TGCCTCGCCACCCCGGCAGGCCGGGTGGTCCTCGCAGGCCA TGCCTCGCCACCCCGGCAGGCCGGGTGGTCCTCGCCGGCCA < 41bp 1 0.736358444115396 1 0.747065365314484 experiment 0.527283111769208 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRR14 ENSG00000156858 CDS Human protein_coding chr16:30664142 chr16:30664157 nonsynonymous SNV 0.296 1 36 hm5C_associated_SNPs_20391 0 0 1 0 1 PRR14 chr16:30664163 5'GT 30664163 Upstream 7bp
chr11 66238799 66238799 1 + A C COAD 66238806 + 66238786 66238826 41 GCCAACGGGGTGAAGCCAGACGTCATGCACCACATCTCCAC GCCAACGGGGTGACGCCAGACGTCATGCACCACATCTCCAC < 41bp 1 0.773057897421641 1 0.340150654315948 experiment 0.453884205156718 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PELI3 ENSG00000174516 CDS Human protein_coding chr11:66238806 chr11:66238799 nonsynonymous SNV 0.994 3 14 hm5C_associated_SNPs_20392 0 0 0 0 1 PELI3 chr11:66238713 3'AG 66238713 Downstream 87bp
chr19 4950626 4950626 1 + G A COAD 4950627 + 4950607 4950647 41 CTGACTCTCCCTGCAGGGCGCTGGCTCTCAACTGCTTTGCT CTGACTCTCCCTGCAGGGCACTGGCTCTCAACTGCTTTGCT < 41bp 1 0.231473803864244 1 0.040188193321228 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4950627 chr19:4950626 . . 0 20 hm5C_associated_SNPs_20393 0 0 0 0 1 UHRF1 chr19:4950623 3'AG 4950623 Downstream 4bp
chr19 4950626 4950626 1 + G A COAD 4950631 + 4950611 4950651 41 CTCTCCCTGCAGGGCGCTGGCTCTCAACTGCTTTGCTCCCA CTCTCCCTGCAGGGCACTGGCTCTCAACTGCTTTGCTCCCA < 41bp 1 0.173691773175392 1 0.125470250844955 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4950631 chr19:4950626 . . 0 16 hm5C_associated_SNPs_20394 0 0 0 0 1 UHRF1 chr19:4950623 3'AG 4950623 Downstream 4bp
chr12 57599418 57599418 1 + G A COAD 57599419 + 57599399 57599439 41 CGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGACGC CGGCCACCTCTGCAGCTGCACTCGGAACTTCATGAAGACGC < 41bp 1 0.271804405861094 1 0.310987412929535 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599419 chr12:57599418 nonsynonymous SNV 0.952 1 20 hm5C_associated_SNPs_20395 0 0 0 0 2 LRP1 chr12:57599341 3'AG 57599341 Downstream 78bp
chr12 57599418 57599418 1 + G A COAD 57599419 + 57599399 57599439 41 CGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGACGC CGGCCACCTCTGCAGCTGCACTCGGAACTTCATGAAGACGC < 41bp 1 0.271804405861094 1 0.310987412929535 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599419 chr12:57599418 nonsynonymous SNV 0.952 1 20 hm5C_associated_SNPs_20395 0 0 0 0 2 LRP1 chr12:57599460 5'GT 57599460 Upstream 43bp
chr1 24022311 24022311 1 + C T COAD 24022327 + 24022307 24022347 41 TCAGCATCGCAGACAAGAAGCGCAGGACAGGCTGCATTGGG TCAGTATCGCAGACAAGAAGCGCAGGACAGGCTGCATTGGG < 41bp 1 0.772968459536555 1 0.528222978115082 experiment 0.454063080926891 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022327 chr1:24022311 synonymous SNV . 0 5 hm5C_associated_SNPs_20398 0 0 1 0 2 RPL11 chr1:24022288 3'AG 24022288 Downstream 24bp
chr1 24022311 24022311 1 + C T COAD 24022327 + 24022307 24022347 41 TCAGCATCGCAGACAAGAAGCGCAGGACAGGCTGCATTGGG TCAGTATCGCAGACAAGAAGCGCAGGACAGGCTGCATTGGG < 41bp 1 0.772968459536555 1 0.528222978115082 experiment 0.454063080926891 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022327 chr1:24022311 synonymous SNV . 0 5 hm5C_associated_SNPs_20398 0 0 1 0 2 RPL11 chr1:24022398 5'GT 24022398 Upstream 88bp
chr7 98563362 98563362 1 + G A COAD 98563380 + 98563360 98563400 41 ACGCGCCTGGCAGTGATGAGCATGGAGATGCGGAAGAACTT ACACGCCTGGCAGTGATGAGCATGGAGATGCGGAAGAACTT < 41bp 1 0.186986330902807 1 0.453477591276169 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98563380 chr7:98563362 synonymous SNV . 0 3 hm5C_associated_SNPs_20399 0 0 1 0 1 TRRAP chr7:98563319 3'AG 98563319 Downstream 44bp
chr4 77631386 77631386 1 + C A COAD 77631393 + 77631373 77631413 41 CTCACCTCTGGCCCCCAGCACAGGAAAGCAGCGTGGTCAGG CTCACCTCTGGCCACCAGCACAGGAAAGCAGCGTGGTCAGG < 41bp 1 0.581618173607859 1 0.381953537464142 experiment 0.836763652784283 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77631393 chr4:77631386 nonsynonymous SNV 0.631 1 14 hm5C_associated_SNPs_20400 0 0 0 0 2 SHROOM3 chr4:77631309 3'AG 77631309 Downstream 78bp
chr4 77631386 77631386 1 + C A COAD 77631393 + 77631373 77631413 41 CTCACCTCTGGCCCCCAGCACAGGAAAGCAGCGTGGTCAGG CTCACCTCTGGCCACCAGCACAGGAAAGCAGCGTGGTCAGG < 41bp 1 0.581618173607859 1 0.381953537464142 experiment 0.836763652784283 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77631393 chr4:77631386 nonsynonymous SNV 0.631 1 14 hm5C_associated_SNPs_20400 0 0 0 0 2 SHROOM3 chr4:77631440 5'GT 77631440 Upstream 55bp
chr22 39826105 39826105 1 + C T COAD 39826113 + 39826093 39826133 41 CTCTTCCGCTCCCGGCCCGCCCACTCGCTCCCGCCTGGCGA CTCTTCCGCTCCTGGCCCGCCCACTCGCTCCCGCCTGGCGA < 41bp 1 0.0960514361837501 1 0.175361067056656 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TAB1 ENSG00000100324 CDS Human protein_coding chr22:39826113 chr22:39826105 nonsynonymous SNV 0.818 3 13 hm5C_associated_SNPs_20401 0 0 1 0 1 TAB1 chr22:39826020 3'AG 39826020 Downstream 86bp
chr1 242030154 242030154 1 + G C COAD 242030150 + 242030130 242030170 41 AGCCTGCCCATTCAAGAAGTCATAGTTGGGATGACAAAACA AGCCTGCCCATTCAAGAAGTCATACTTGGGATGACAAAACA < 41bp 1 0.0899707707542036 1 0.0602223575115204 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXO1 ENSG00000174371 CDS Human protein_coding chr1:242030150 chr1:242030154 nonsynonymous SNV 0.980 0 25 hm5C_associated_SNPs_20402 0 0 1 0 1 EXO1 chr1:242030132 3'AG 242030132 Downstream 23bp
chr19 45261559 45261559 1 + G A COAD 45261574 + 45261554 45261594 41 TCAGCGTCCGGCCGCGGGCTCCTCCCGCTGGTGCGCACGCT TCAGCATCCGGCCGCGGGCTCCTCCCGCTGGTGCGCACGCT < 41bp 1 0.0530675222630886 1 0.113949418067932 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCL3 ENSG00000069399 CDS Human protein_coding chr19:45261574 chr19:45261559 synonymous SNV . 0 6 hm5C_associated_SNPs_20403 0 0 0 0 1 BCL3 chr19:45261503 3'AG 45261503 Downstream 57bp
chr7 130020953 130020953 1 + G A COAD 130020965 + 130020945 130020985 41 GGTGCTCCGAATCTCTGTAGCCGATGAGGCCCAGGTACAGA GGTGCTCCAAATCTCTGTAGCCGATGAGGCCCAGGTACAGA < 41bp 1 0.243437000291704 1 0.0738238096237183 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130020965 chr7:130020953 nonsynonymous SNV 0.998 4 9 hm5C_associated_SNPs_20405 0 0 0 0 2 CPA1 chr7:130020939 3'AG 130020939 Downstream 15bp
chr7 130020953 130020953 1 + G A COAD 130020965 + 130020945 130020985 41 GGTGCTCCGAATCTCTGTAGCCGATGAGGCCCAGGTACAGA GGTGCTCCAAATCTCTGTAGCCGATGAGGCCCAGGTACAGA < 41bp 1 0.243437000291704 1 0.0738238096237183 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130020965 chr7:130020953 nonsynonymous SNV 0.998 4 9 hm5C_associated_SNPs_20405 0 0 0 0 2 CPA1 chr7:130021020 5'GT 130021020 Upstream 68bp
chr9 133507350 133507350 1 + C T COAD 133507332 + 133507312 133507352 41 CTTTTACCTTTTCCCAGTACCTTTCCTCCAAGGAGCTCCGG CTTTTACCTTTTCCCAGTACCTTTCCTCCAAGGAGCTCTGG < 41bp 1 0.0501011486299542 1 0.0295866131782532 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133507332 chr9:133507350 synonymous SNV . 0 39 hm5C_associated_SNPs_20407 0 0 1 0 2 FUBP3 chr9:133507329 3'AG 133507329 Downstream 22bp
chr9 133507350 133507350 1 + C T COAD 133507332 + 133507312 133507352 41 CTTTTACCTTTTCCCAGTACCTTTCCTCCAAGGAGCTCCGG CTTTTACCTTTTCCCAGTACCTTTCCTCCAAGGAGCTCTGG < 41bp 1 0.0501011486299542 1 0.0295866131782532 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133507332 chr9:133507350 synonymous SNV . 0 39 hm5C_associated_SNPs_20407 0 0 1 0 2 FUBP3 chr9:133507409 5'GT 133507409 Upstream 60bp
chr12 62931428 62931428 1 + C T COAD 62931443 + 62931423 62931463 41 CTTGGCGCATTGCCATGGGGCTGTTCTTGGAACATCATGGC CTTGGTGCATTGCCATGGGGCTGTTCTTGGAACATCATGGC < 41bp 1 0.15719390597384 1 0.0482230484485626 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62931443 chr12:62931428 nonsynonymous SNV 0.934 3 6 hm5C_associated_SNPs_20408 0 0 1 0 2 MON2 chr12:62931382 3'AG 62931382 Downstream 47bp
chr12 62931428 62931428 1 + C T COAD 62931443 + 62931423 62931463 41 CTTGGCGCATTGCCATGGGGCTGTTCTTGGAACATCATGGC CTTGGTGCATTGCCATGGGGCTGTTCTTGGAACATCATGGC < 41bp 1 0.15719390597384 1 0.0482230484485626 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62931443 chr12:62931428 nonsynonymous SNV 0.934 3 6 hm5C_associated_SNPs_20408 0 0 1 0 2 MON2 chr12:62931486 5'GT 62931486 Upstream 59bp
chr6 13591965 13591965 1 + G A COAD 13591954 + 13591934 13591974 41 CCGTCCCGGGTGTGGGAGTTCTACCACTACCGGCGGGAGGT CCGTCCCGGGTGTGGGAGTTCTACCACTACCAGCGGGAGGT < 41bp 1 0.622425042381748 1 0.158976465463638 experiment 0.755149915236504 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SIRT5 ENSG00000124523 CDS Human protein_coding chr6:13591954 chr6:13591965 nonsynonymous SNV 0.999 4 32 hm5C_associated_SNPs_20409 0 0 0 0 1 SIRT5 chr6:13591901 3'AG 13591901 Downstream 65bp
chr6 37141795 37141795 1 + G A COAD 37141808 + 37141788 37141828 41 CATGGATGCAAGATGTTCTCCTGCCCCAGGAAACTGCTGAG CATGGATACAAGATGTTCTCCTGCCCCAGGAAACTGCTGAG < 41bp 1 0.291003874152232 1 0.232919752597809 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PIM1 ENSG00000137193 CDS Human protein_coding chr6:37141808 chr6:37141795 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_20410 0 0 1 0 1 PIM1 chr6:37141710 3'AG 37141710 Downstream 86bp
chrX 9661224 9661224 1 + C T COAD 9661244 + 9661224 9661264 41 CGGTTTTGCAAGAATATGGACGGAAGATGGTGAGTTCTGTG TGGTTTTGCAAGAATATGGACGGAAGATGGTGAGTTCTGTG < 41bp 1 0.47554989301033 1 0.219690501689911 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBL1X ENSG00000101849 CDS Human protein_coding chrX:9661244 chrX:9661224 synonymous SNV . 0 1 hm5C_associated_SNPs_20411 0 0 1 0 2 TBL1X chrX:9661189 3'AG 9661189 Downstream 36bp
chrX 9661224 9661224 1 + C T COAD 9661244 + 9661224 9661264 41 CGGTTTTGCAAGAATATGGACGGAAGATGGTGAGTTCTGTG TGGTTTTGCAAGAATATGGACGGAAGATGGTGAGTTCTGTG < 41bp 1 0.47554989301033 1 0.219690501689911 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBL1X ENSG00000101849 CDS Human protein_coding chrX:9661244 chrX:9661224 synonymous SNV . 0 1 hm5C_associated_SNPs_20411 0 0 1 0 2 TBL1X chrX:9661252 5'GT 9661252 Upstream 29bp
chr11 763825 763825 1 + G A COAD 763823 + 763803 763843 41 ATTGTCATGGGCGCCTCCTTCCGCAACACGGGCGAGATCAA ATTGTCATGGGCGCCTCCTTCCACAACACGGGCGAGATCAA < 41bp 1 0.670849413590688 1 0.600056946277618 experiment 0.658301172818624 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TALDO1 ENSG00000177156 CDS Human protein_coding chr11:763823 chr11:763825 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_20412 0 0 1 0 1 TALDO1 chr11:763747 3'AG 763747 Downstream 79bp
chr19 12923928 12923928 1 + C T COAD 12923946 + 12923926 12923966 41 CACGTGGAGCCTGTGTTCGGCTTCCCCCAGTTTGTCCGGTT CATGTGGAGCCTGTGTTCGGCTTCCCCCAGTTTGTCCGGTT < 41bp 1 0.134050102637272 1 0.0636387169361115 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12923946 chr19:12923928 synonymous SNV . 0 3 hm5C_associated_SNPs_20413 0 0 1 0 2 RNASEH2A chr19:12923897 3'AG 12923897 Downstream 32bp
chr19 12923928 12923928 1 + C T COAD 12923946 + 12923926 12923966 41 CACGTGGAGCCTGTGTTCGGCTTCCCCCAGTTTGTCCGGTT CATGTGGAGCCTGTGTTCGGCTTCCCCCAGTTTGTCCGGTT < 41bp 1 0.134050102637272 1 0.0636387169361115 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12923946 chr19:12923928 synonymous SNV . 0 3 hm5C_associated_SNPs_20413 0 0 1 0 2 RNASEH2A chr19:12924020 5'GT 12924020 Upstream 93bp
chr3 9788110 9788110 1 + G A COAD 9788101 + 9788081 9788121 41 CCCAGGAAGCCCGAGAGCATCTCTACCTCGTCCTCTTCTTT CCCAGGAAGCCCGAGAGCATCTCTACCTCATCCTCTTCTTT < 41bp 1 0.485794678589103 1 0.281896829605103 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9788101 chr3:9788110 nonsynonymous SNV 0.995 3 30 hm5C_associated_SNPs_20414 0 0 1 0 1 BRPF1 chr3:9788138 5'GT 9788138 Upstream 29bp
chr21 45217901 45217901 1 + C T COAD 45217920 + 45217900 45217940 41 GCGTCGGACAGTGATGAGTCCTCTGAGGGTGGTGAGCGTGG GTGTCGGACAGTGATGAGTCCTCTGAGGGTGGTGAGCGTGG < 41bp 1 0.367214662645675 1 0.297252178192139 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217920 chr21:45217901 nonsynonymous SNV 0.000 0 2 hm5C_associated_SNPs_20415 0 0 1 0 1 RRP1 chr21:45217981 5'GT 45217981 Upstream 81bp
chr12 53343318 53343318 1 - C T COAD 53343306 - 53343286 53343326 41 GACCTGGGGTCCCTTCTTCTCCAAGTGCTCCCGGATTTTGC GACCTGGGATCCCTTCTTCTCCAAGTGCTCCCGGATTTTGC < 41bp 1 0.404473985789667 1 0.347249805927277 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KRT18 ENSG00000111057 CDS Human other chr12:53343306 chr12:53343318 nonsynonymous SNV 0.998 2 9 hm5C_associated_SNPs_20420 0 0 0 0 1 KRT18 chr12:53343240 5'GT 53343240 Upstream 79bp
chr12 113867027 113867027 1 + G A COAD 113867026 + 113867006 113867046 41 CTGGGCATTCCTGCCACCATCGTGCTCCCCGAGAGCACCTC CTGGGCATTCCTGCCACCATCATGCTCCCCGAGAGCACCTC < 41bp 1 0.452737989496483 1 0.448094993829727 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SDSL ENSG00000139410 CDS Human protein_coding chr12:113867026 chr12:113867027 nonsynonymous SNV 0.875 5 22 hm5C_associated_SNPs_20421 0 0 0 0 2 SDSL chr12:113866965 3'AG 113866965 Downstream 63bp
chr12 113867027 113867027 1 + G A COAD 113867026 + 113867006 113867046 41 CTGGGCATTCCTGCCACCATCGTGCTCCCCGAGAGCACCTC CTGGGCATTCCTGCCACCATCATGCTCCCCGAGAGCACCTC < 41bp 1 0.452737989496483 1 0.448094993829727 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SDSL ENSG00000139410 CDS Human protein_coding chr12:113867026 chr12:113867027 nonsynonymous SNV 0.875 5 22 hm5C_associated_SNPs_20421 0 0 0 0 2 SDSL chr12:113867104 5'GT 113867104 Upstream 78bp
chr7 156746891 156746891 1 + G A COAD 156746911 + 156746891 156746931 41 GCTCTCATGGGTGCCTGCGTCACTGCCTCGGCCATGCCCAG ACTCTCATGGGTGCCTGCGTCACTGCCTCGGCCATGCCCAG < 41bp 1 0.553597443495317 1 0.448525130748749 experiment 0.892805113009366 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NOM1 ENSG00000146909 CDS Human protein_coding chr7:156746911 chr7:156746891 nonsynonymous SNV 0.000 0 1 hm5C_associated_SNPs_20422 0 0 1 0 1 NOM1 chr7:156746797 3'AG 156746797 Downstream 95bp
chr2 113243553 113243553 1 + C T COAD 113243539 + 113243519 113243559 41 GGTGAATTACTACAGGGGTGCTGACAAACTGTGTCGCAAAG GGTGAATTACTACAGGGGTGCTGACAAACTGTGTTGCAAAG < 41bp 1 0.238228025069472 1 0.190762549638748 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113243539 chr2:113243553 nonsynonymous SNV 0.998 4 35 hm5C_associated_SNPs_20425 0 0 1 0 2 TTL chr2:113243494 3'AG 113243494 Downstream 60bp
chr2 113243553 113243553 1 + C T COAD 113243539 + 113243519 113243559 41 GGTGAATTACTACAGGGGTGCTGACAAACTGTGTCGCAAAG GGTGAATTACTACAGGGGTGCTGACAAACTGTGTTGCAAAG < 41bp 1 0.238228025069472 1 0.190762549638748 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113243539 chr2:113243553 nonsynonymous SNV 0.998 4 35 hm5C_associated_SNPs_20425 0 0 1 0 2 TTL chr2:113243572 5'GT 113243572 Upstream 20bp
chr14 105814903 105814903 1 + G A COAD 105814915 + 105814895 105814935 41 TGGTGATCGCTGTCAAGATGCAGGTGAGGCCGCTTGTGACC TGGTGATCACTGTCAAGATGCAGGTGAGGCCGCTTGTGACC < 41bp 1 0.535390550787517 1 0.592350661754608 experiment 0.929218898424967 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PACS2 ENSG00000179364 CDS Human protein_coding chr14:105814915 chr14:105814903 nonsynonymous SNV 0.915 3 9 hm5C_associated_SNPs_20430 0 0 1 0 2 PACS2 chr14:105814830 3'AG 105814830 Downstream 74bp
chr14 105814903 105814903 1 + G A COAD 105814915 + 105814895 105814935 41 TGGTGATCGCTGTCAAGATGCAGGTGAGGCCGCTTGTGACC TGGTGATCACTGTCAAGATGCAGGTGAGGCCGCTTGTGACC < 41bp 1 0.535390550787517 1 0.592350661754608 experiment 0.929218898424967 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PACS2 ENSG00000179364 CDS Human protein_coding chr14:105814915 chr14:105814903 nonsynonymous SNV 0.915 3 9 hm5C_associated_SNPs_20430 0 0 1 0 2 PACS2 chr14:105814917 5'GT 105814917 Upstream 15bp
chr2 220149398 220149398 1 + G A COAD 220149415 + 220149395 220149435 41 CGCGAGCAGCAGCCGTCAGTCACTTCCAGGTCTGGGGGCAC CGCAAGCAGCAGCCGTCAGTCACTTCCAGGTCTGGGGGCAC < 41bp 1 0.472967662138611 1 0.470569103956223 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220149415 chr2:220149398 nonsynonymous SNV 0.999 1 4 hm5C_associated_SNPs_20431 1 0 1 0 1 DNAJB2 chr2:220149354 3'AG 220149354 Downstream 45bp
chr12 69082833 69082833 1 + C T COAD 69082818 + 69082798 69082838 41 CTGCACGGAAACAGAGTGCTCAGAAAAGAGTTTTACGTATC CTGCACGGAAACAGAGTGCTCAGAAAAGAGTTTTATGTATC < 41bp 1 0.703356860684358 1 0.581282198429108 experiment 0.593286278631284 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69082818 chr12:69082833 nonsynonymous SNV 0.997 0 36 hm5C_associated_SNPs_20432 0 0 1 0 2 NUP107 chr12:69082742 3'AG 69082742 Downstream 92bp
chr12 69082833 69082833 1 + C T COAD 69082818 + 69082798 69082838 41 CTGCACGGAAACAGAGTGCTCAGAAAAGAGTTTTACGTATC CTGCACGGAAACAGAGTGCTCAGAAAAGAGTTTTATGTATC < 41bp 1 0.703356860684358 1 0.581282198429108 experiment 0.593286278631284 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69082818 chr12:69082833 nonsynonymous SNV 0.997 0 36 hm5C_associated_SNPs_20432 0 0 1 0 2 NUP107 chr12:69082833 5'GT 69082833 Upstream 1bp
chr6 29911973 29911973 1 + T C COAD 29911960 + 29911940 29911980 41 CATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCC CATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCCTCTACCC < 41bp 1 0.697257949618817 1 0.463398456573486 experiment 0.605484100762366 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911960 chr6:29911973 nonsynonymous SNV 0.009 1 34 hm5C_associated_SNPs_20433 0 0 0 0 1 HLA-A chr6:29911899 3'AG 29911899 Downstream 75bp
chr1 116940623 116940623 1 + A G COAD 116940615 + 116940595 116940635 41 GAGATAGTGTTTGCCAGGACCTCCCCTCAGCAGAAGCTCAT GAGATAGTGTTTGCCAGGACCTCCCCTCGGCAGAAGCTCAT < 41bp 1 0.256128798032654 1 0.278666526079178 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116940615 chr1:116940623 nonsynonymous SNV 1.000 5 29 hm5C_associated_SNPs_20434 0 0 1 0 1 ATP1A1 chr1:116940660 5'GT 116940660 Upstream 38bp
chr10 73039801 73039801 1 + C T COAD 73039798 + 73039778 73039818 41 CAGGAAGGCCTGGATGAGGCCACCGGTGAGCCCGCCCCACT CAGGAAGGCCTGGATGAGGCCACTGGTGAGCCCGCCCCACT < 41bp 1 0.490860943065502 1 0.13699808716774 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UNC5B ENSG00000107731 CDS Human protein_coding chr10:73039798 chr10:73039801 synonymous SNV . 0 24 hm5C_associated_SNPs_20437 0 0 1 0 1 UNC5B chr10:73039802 5'GT 73039802 Upstream 2bp
chr2 101186042 101186042 1 + G A COAD 101186044 + 101186024 101186064 41 TCCTTGTTTTGTGCAGACGGCGGAGACTGGCTGAGTGGAAA TCCTTGTTTTGTGCAGACAGCGGAGACTGGCTGAGTGGAAA < 41bp 1 0.674998179284603 1 0.835071921348572 experiment 0.650003641430794 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PDCL3 ENSG00000115539 CDS Human protein_coding chr2:101186044 chr2:101186042 nonsynonymous SNV 0.858 0 19 hm5C_associated_SNPs_20438 0 0 1 0 1 PDCL3 chr2:101186040 3'AG 101186040 Downstream 3bp
chr3 39431979 39431979 1 + T C COAD 39431995 + 39431975 39432015 41 GGCCTTTGGAAAGGGATGTCCCCTGTAAGCTGCCATCTGGG GGCCCTTGGAAAGGGATGTCCCCTGTAAGCTGCCATCTGGG < 41bp 1 0.290093420800664 1 0.147310763597488 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431995 chr3:39431979 nonsynonymous SNV 1.000 5 5 hm5C_associated_SNPs_20439 0 0 1 0 2 SLC25A38 chr3:39431914 3'AG 39431914 Downstream 66bp
chr3 39431979 39431979 1 + T C COAD 39431995 + 39431975 39432015 41 GGCCTTTGGAAAGGGATGTCCCCTGTAAGCTGCCATCTGGG GGCCCTTGGAAAGGGATGTCCCCTGTAAGCTGCCATCTGGG < 41bp 1 0.290093420800664 1 0.147310763597488 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431995 chr3:39431979 nonsynonymous SNV 1.000 5 5 hm5C_associated_SNPs_20439 0 0 1 0 2 SLC25A38 chr3:39431998 5'GT 39431998 Upstream 20bp
chr3 14905695 14905695 1 + T G COAD 14905692 + 14905672 14905712 41 TCGGCAGCCCCCAAAGAGGACCTTACGTCGGATGAAGAGCA TCGGCAGCCCCCAAAGAGGACCTGACGTCGGATGAAGAGCA < 41bp 1 0.116537284479071 1 0.1018006503582 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FGD5 ENSG00000154783 CDS Human protein_coding chr3:14905692 chr3:14905695 synonymous SNV . 0 24 hm5C_associated_SNPs_20440 0 0 0 0 2 FGD5 chr3:14905635 3'AG 14905635 Downstream 61bp
chr3 14905695 14905695 1 + T G COAD 14905692 + 14905672 14905712 41 TCGGCAGCCCCCAAAGAGGACCTTACGTCGGATGAAGAGCA TCGGCAGCCCCCAAAGAGGACCTGACGTCGGATGAAGAGCA < 41bp 1 0.116537284479071 1 0.1018006503582 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FGD5 ENSG00000154783 CDS Human protein_coding chr3:14905692 chr3:14905695 synonymous SNV . 0 24 hm5C_associated_SNPs_20440 0 0 0 0 2 FGD5 chr3:14905767 5'GT 14905767 Upstream 73bp
chr5 38885488 38885488 1 + C T COAD 38885507 + 38885487 38885527 41 CCGAGGACTTCAAGACTTTGCACTGTACTTGGGATCCTGGG CTGAGGACTTCAAGACTTTGCACTGTACTTGGGATCCTGGG < 41bp 1 0.364722329821229 1 0.0508376061916351 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OSMR ENSG00000145623 CDS Human protein_coding chr5:38885507 chr5:38885488 synonymous SNV . 0 2 hm5C_associated_SNPs_20443 0 0 1 0 2 OSMR chr5:38885451 3'AG 38885451 Downstream 38bp
chr5 38885488 38885488 1 + C T COAD 38885507 + 38885487 38885527 41 CCGAGGACTTCAAGACTTTGCACTGTACTTGGGATCCTGGG CTGAGGACTTCAAGACTTTGCACTGTACTTGGGATCCTGGG < 41bp 1 0.364722329821229 1 0.0508376061916351 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OSMR ENSG00000145623 CDS Human protein_coding chr5:38885507 chr5:38885488 synonymous SNV . 0 2 hm5C_associated_SNPs_20443 0 0 1 0 2 OSMR chr5:38885586 5'GT 38885586 Upstream 99bp
chr19 39979213 39979213 1 + C T COAD 39979223 + 39979203 39979243 41 ACGTGCGAACCGTGCTGGAGCACTATGCCCTGGAGGATGAC ACGTGCGAACTGTGCTGGAGCACTATGCCCTGGAGGATGAC < 41bp 1 0.475872043084985 1 0.10144305229187 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TIMM50 ENSG00000105197 CDS Human protein_coding chr19:39979223 chr19:39979213 synonymous SNV . 0 11 hm5C_associated_SNPs_20444 0 0 1 0 2 TIMM50 chr19:39979179 3'AG 39979179 Downstream 35bp
chr19 39979213 39979213 1 + C T COAD 39979223 + 39979203 39979243 41 ACGTGCGAACCGTGCTGGAGCACTATGCCCTGGAGGATGAC ACGTGCGAACTGTGCTGGAGCACTATGCCCTGGAGGATGAC < 41bp 1 0.475872043084985 1 0.10144305229187 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TIMM50 ENSG00000105197 CDS Human protein_coding chr19:39979223 chr19:39979213 synonymous SNV . 0 11 hm5C_associated_SNPs_20444 0 0 1 0 2 TIMM50 chr19:39979285 5'GT 39979285 Upstream 73bp
chr14 104124098 104124098 1 + C T COAD 104124107 + 104124087 104124127 41 AAATATGATGACGACATTTCCCCATCCGTGAGTGGCTCTGT AAATATGATGATGACATTTCCCCATCCGTGAGTGGCTCTGT < 41bp 1 0.0922975985790376 1 0.301946014165878 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104124107 chr14:104124098 synonymous SNV . 0 12 hm5C_associated_SNPs_20445 0 0 1 0 1 KLC1 chr14:104124113 5'GT 104124113 Upstream 16bp
chr14 104124098 104124098 1 + C T COAD 104124108 + 104124088 104124128 41 AATATGATGACGACATTTCCCCATCCGTGAGTGGCTCTGTA AATATGATGATGACATTTCCCCATCCGTGAGTGGCTCTGTA < 41bp 1 0.0439431764364009 1 0.253572583198547 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104124108 chr14:104124098 synonymous SNV . 0 11 hm5C_associated_SNPs_20446 0 0 1 0 1 KLC1 chr14:104124113 5'GT 104124113 Upstream 16bp
chr14 104124098 104124098 1 + C T COAD 104124112 + 104124092 104124132 41 TGATGACGACATTTCCCCATCCGTGAGTGGCTCTGTAGCAA TGATGATGACATTTCCCCATCCGTGAGTGGCTCTGTAGCAA < 41bp 1 0.139927305269547 1 0.345561325550079 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104124112 chr14:104124098 synonymous SNV . 0 7 hm5C_associated_SNPs_20447 0 0 1 0 1 KLC1 chr14:104124113 5'GT 104124113 Upstream 16bp
chr19 39948323 39948323 1 + G A COAD 39948343 + 39948323 39948363 41 GATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA AATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA < 41bp 1 0.252896781463905 1 0.164279043674469 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948343 chr19:39948323 nonsynonymous SNV 0.872 3 1 hm5C_associated_SNPs_20448 0 0 1 0 2 SUPT5H chr19:39948315 3'AG 39948315 Downstream 9bp
chr19 39948323 39948323 1 + G A COAD 39948343 + 39948323 39948363 41 GATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA AATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA < 41bp 1 0.252896781463905 1 0.164279043674469 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948343 chr19:39948323 nonsynonymous SNV 0.872 3 1 hm5C_associated_SNPs_20448 0 0 1 0 2 SUPT5H chr19:39948380 5'GT 39948380 Upstream 58bp
chr7 45662255 45662255 1 + T C COAD 45662274 + 45662254 45662294 41 GTTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG GCTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG < 41bp 1 0.444582377458638 1 0.596491813659668 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45662274 chr7:45662255 synonymous SNV . 0 2 hm5C_associated_SNPs_20454 0 0 1 0 2 ADCY1 chr7:45662231 3'AG 45662231 Downstream 25bp
chr7 45662255 45662255 1 + T C COAD 45662274 + 45662254 45662294 41 GTTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG GCTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG < 41bp 1 0.444582377458638 1 0.596491813659668 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45662274 chr7:45662255 synonymous SNV . 0 2 hm5C_associated_SNPs_20454 0 0 1 0 2 ADCY1 chr7:45662342 5'GT 45662342 Upstream 88bp
chr12 6637242 6637242 1 + A G COAD 6637255 + 6637235 6637275 41 CTTGGCAAGTTCTGCATGATCAGGTAGGCCGTGGGGTTGGT CTTGGCAGGTTCTGCATGATCAGGTAGGCCGTGGGGTTGGT < 41bp 1 0.752587661349536 1 0.54904305934906 experiment 0.494824677300927 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6637255 chr12:6637242 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_20455 0 0 1 0 1 NCAPD2 chr12:6637257 5'GT 6637257 Upstream 16bp
chr19 49593597 49593597 1 + G A COAD 49593585 + 49593565 49593605 41 TCCTCCAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGA TCCTCCAACTCGTGCTGAAACCCGAGAGGAGCACATGGAGA < 41bp 1 0.700198233608072 1 0.34480345249176 experiment 0.599603532783857 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593585 chr19:49593597 nonsynonymous SNV 0.997 4 33 hm5C_associated_SNPs_20456 0 0 1 0 2 SNRNP70 chr19:49593548 3'AG 49593548 Downstream 50bp
chr19 49593597 49593597 1 + G A COAD 49593585 + 49593565 49593605 41 TCCTCCAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGA TCCTCCAACTCGTGCTGAAACCCGAGAGGAGCACATGGAGA < 41bp 1 0.700198233608072 1 0.34480345249176 experiment 0.599603532783857 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593585 chr19:49593597 nonsynonymous SNV 0.997 4 33 hm5C_associated_SNPs_20456 0 0 1 0 2 SNRNP70 chr19:49593610 5'GT 49593610 Upstream 14bp
chr19 49593597 49593597 1 + G A COAD 49593586 + 49593566 49593606 41 CCTCCAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGAG CCTCCAACTCGTGCTGAAACCCGAGAGGAGCACATGGAGAG < 41bp 1 0.479167208578751 1 0.726839482784271 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593586 chr19:49593597 nonsynonymous SNV 0.997 4 32 hm5C_associated_SNPs_20457 0 0 1 0 2 SNRNP70 chr19:49593548 3'AG 49593548 Downstream 50bp
chr19 49593597 49593597 1 + G A COAD 49593586 + 49593566 49593606 41 CCTCCAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGAG CCTCCAACTCGTGCTGAAACCCGAGAGGAGCACATGGAGAG < 41bp 1 0.479167208578751 1 0.726839482784271 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593586 chr19:49593597 nonsynonymous SNV 0.997 4 32 hm5C_associated_SNPs_20457 0 0 1 0 2 SNRNP70 chr19:49593610 5'GT 49593610 Upstream 14bp
chr19 49593597 49593597 1 + G A COAD 49593596 + 49593576 49593616 41 GTGCTGAAACCCGAGAGGAGCGCATGGAGAGGAAAGTATGT GTGCTGAAACCCGAGAGGAGCACATGGAGAGGAAAGTATGT < 41bp 1 0.186565131416864 1 0.397282183170319 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593596 chr19:49593597 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_20458 0 0 1 0 2 SNRNP70 chr19:49593548 3'AG 49593548 Downstream 50bp
chr19 49593597 49593597 1 + G A COAD 49593596 + 49593576 49593616 41 GTGCTGAAACCCGAGAGGAGCGCATGGAGAGGAAAGTATGT GTGCTGAAACCCGAGAGGAGCACATGGAGAGGAAAGTATGT < 41bp 1 0.186565131416864 1 0.397282183170319 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593596 chr19:49593597 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_20458 0 0 1 0 2 SNRNP70 chr19:49593610 5'GT 49593610 Upstream 14bp
chr19 49593597 49593597 1 + G A COAD 49593598 + 49593578 49593618 41 GCTGAAACCCGAGAGGAGCGCATGGAGAGGAAAGTATGTCA GCTGAAACCCGAGAGGAGCACATGGAGAGGAAAGTATGTCA < 41bp 1 0.555740691192923 1 0.360303103923798 experiment 0.888518617614155 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593598 chr19:49593597 nonsynonymous SNV 0.997 4 20 hm5C_associated_SNPs_20459 0 0 1 0 2 SNRNP70 chr19:49593548 3'AG 49593548 Downstream 50bp
chr19 49593597 49593597 1 + G A COAD 49593598 + 49593578 49593618 41 GCTGAAACCCGAGAGGAGCGCATGGAGAGGAAAGTATGTCA GCTGAAACCCGAGAGGAGCACATGGAGAGGAAAGTATGTCA < 41bp 1 0.555740691192923 1 0.360303103923798 experiment 0.888518617614155 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593598 chr19:49593597 nonsynonymous SNV 0.997 4 20 hm5C_associated_SNPs_20459 0 0 1 0 2 SNRNP70 chr19:49593610 5'GT 49593610 Upstream 14bp
chr1 28862501 28862501 1 + C T COAD 28862499 + 28862479 28862519 41 TTGCCATCTCCCATGAGGGCCACGTGTACGGCTTCGGCCTC TTGCCATCTCCCATGAGGGCCATGTGTACGGCTTCGGCCTC < 41bp 1 0.317962931963195 1 0.0629045963287354 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28862499 chr1:28862501 synonymous SNV . 0 23 hm5C_associated_SNPs_20460 0 0 1 0 1 RCC1 chr1:28862538 5'GT 28862538 Upstream 38bp
chr1 28862501 28862501 1 + C T COAD 28862519 + 28862499 28862539 41 CACGTGTACGGCTTCGGCCTCTCCAACTACCATCAGCTTGG CATGTGTACGGCTTCGGCCTCTCCAACTACCATCAGCTTGG < 41bp 1 0.752009588082072 1 0.922838270664215 experiment 0.495980823835856 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28862519 chr1:28862501 synonymous SNV . 0 3 hm5C_associated_SNPs_20461 0 0 1 0 1 RCC1 chr1:28862538 5'GT 28862538 Upstream 38bp
chr2 101549387 101549387 1 + C T COAD 101549381 + 101549361 101549401 41 CTCTTTTCTAGAAGTCTCAGCGCAAACGGAAATCTGTGACA CTCTTTTCTAGAAGTCTCAGCGCAAATGGAAATCTGTGACA < 41bp 1 0.382223554479768 1 0.706917703151703 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101549381 chr2:101549387 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_20462 0 0 1 0 2 NPAS2 chr2:101549372 3'AG 101549372 Downstream 16bp
chr2 101549387 101549387 1 + C T COAD 101549381 + 101549361 101549401 41 CTCTTTTCTAGAAGTCTCAGCGCAAACGGAAATCTGTGACA CTCTTTTCTAGAAGTCTCAGCGCAAATGGAAATCTGTGACA < 41bp 1 0.382223554479768 1 0.706917703151703 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101549381 chr2:101549387 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_20462 0 0 1 0 2 NPAS2 chr2:101549463 5'GT 101549463 Upstream 77bp
chr1 161751784 161751784 1 + G A COAD 161751776 + 161751756 161751796 41 GACATTTGGGACATCAACAACCAAATCTGTACAGGTAATTA GACATTTGGGACATCAACAACCAAATCTATACAGGTAATTA < 41bp 1 0.158087398468044 1 0.0671840906143188 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161751776 chr1:161751784 nonsynonymous SNV 0.994 0 29 hm5C_associated_SNPs_20464 0 0 1 0 2 ATF6 chr1:161751702 3'AG 161751702 Downstream 83bp
chr1 161751784 161751784 1 + G A COAD 161751776 + 161751756 161751796 41 GACATTTGGGACATCAACAACCAAATCTGTACAGGTAATTA GACATTTGGGACATCAACAACCAAATCTATACAGGTAATTA < 41bp 1 0.158087398468044 1 0.0671840906143188 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161751776 chr1:161751784 nonsynonymous SNV 0.994 0 29 hm5C_associated_SNPs_20464 0 0 1 0 2 ATF6 chr1:161751789 5'GT 161751789 Upstream 6bp
chr15 32920978 32920978 1 + T G COAD 32920986 + 32920966 32921006 41 CAGAACACCTTCTATTACACCTCAAGAAGAAAGAATTGGTA CAGAACACCTTCGATTACACCTCAAGAAGAAAGAATTGGTA < 41bp 1 0.467150480685619 1 0.555000782012939 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP11A ENSG00000198826 CDS Human protein_coding chr15:32920986 chr15:32920978 synonymous SNV . 0 13 hm5C_associated_SNPs_20466 0 0 1 0 2 ARHGAP11A chr15:32920929 3'AG 32920929 Downstream 50bp
chr15 32920978 32920978 1 + T G COAD 32920986 + 32920966 32921006 41 CAGAACACCTTCTATTACACCTCAAGAAGAAAGAATTGGTA CAGAACACCTTCGATTACACCTCAAGAAGAAAGAATTGGTA < 41bp 1 0.467150480685619 1 0.555000782012939 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP11A ENSG00000198826 CDS Human protein_coding chr15:32920986 chr15:32920978 synonymous SNV . 0 13 hm5C_associated_SNPs_20466 0 0 1 0 2 ARHGAP11A chr15:32921003 5'GT 32921003 Upstream 26bp
chr17 3563926 3563926 1 + C T COAD 3563941 + 3563921 3563961 41 GCGCGCACAGGCTCTGGCAGCCGTCTCAGGCAGGACTGGGC GCGCGTACAGGCTCTGGCAGCCGTCTCAGGCAGGACTGGGC < 41bp 1 0.102217412262068 1 0.139604359865189 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CTNS ENSG00000040531 CDS Human protein_coding chr17:3563941 chr17:3563926 synonymous SNV . 0 6 hm5C_associated_SNPs_20468 0 0 0 0 1 CTNS chr17:3563911 3'AG 3563911 Downstream 16bp
chr17 3563926 3563926 1 + C T COAD 3563942 + 3563922 3563962 41 CGCGCACAGGCTCTGGCAGCCGTCTCAGGCAGGACTGGGCA CGCGTACAGGCTCTGGCAGCCGTCTCAGGCAGGACTGGGCA < 41bp 1 0.254272405385348 1 0.29515939950943 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CTNS ENSG00000040531 CDS Human protein_coding chr17:3563942 chr17:3563926 synonymous SNV . 0 5 hm5C_associated_SNPs_20469 0 0 0 0 1 CTNS chr17:3563911 3'AG 3563911 Downstream 16bp
chr9 100757037 100757037 1 + T G COAD 100757048 + 100757028 100757068 41 TTTCAAATCTCCCCAAGCTGCCTAAATTGAAAAAGGTAAGT TTTCAAATCGCCCCAAGCTGCCTAAATTGAAAAAGGTAAGT < 41bp 1 0.111407542636807 1 0.0994461178779602 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100757048 chr9:100757037 nonsynonymous SNV 0.985 4 10 hm5C_associated_SNPs_20473 0 0 1 0 1 ANP32B chr9:100757062 5'GT 100757062 Upstream 26bp
chr9 114296071 114296071 1 + A C COAD 114296051 + 114296031 114296071 41 TTGAAGGATGTAGCTGTGAACTTTTCAAGAGGAGAGTGGAA TTGAAGGATGTAGCTGTGAACTTTTCAAGAGGAGAGTGGAC < 41bp 1 0.0584567634886293 1 0.0368918180465698 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF483 ENSG00000173258 CDS Human protein_coding chr9:114296051 chr9:114296071 nonsynonymous SNV 0.790 0 41 hm5C_associated_SNPs_20474 0 0 0 0 2 ZNF483 chr9:114296019 3'AG 114296019 Downstream 53bp
chr9 114296071 114296071 1 + A C COAD 114296051 + 114296031 114296071 41 TTGAAGGATGTAGCTGTGAACTTTTCAAGAGGAGAGTGGAA TTGAAGGATGTAGCTGTGAACTTTTCAAGAGGAGAGTGGAC < 41bp 1 0.0584567634886293 1 0.0368918180465698 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF483 ENSG00000173258 CDS Human protein_coding chr9:114296051 chr9:114296071 nonsynonymous SNV 0.790 0 41 hm5C_associated_SNPs_20474 0 0 0 0 2 ZNF483 chr9:114296145 5'GT 114296145 Upstream 75bp
chr4 20568891 20568891 1 + T C COAD 20568888 + 20568868 20568908 41 TTTGAATTAATTTTCAGGTCCTGTGGATGTCAATATTCTAG TTTGAATTAATTTTCAGGTCCTGCGGATGTCAATATTCTAG < 41bp 1 0.172456469899101 1 0.119452655315399 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568888 chr4:20568891 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_20475 0 0 0 0 1 SLIT2 chr4:20568885 3'AG 20568885 Downstream 7bp
chr16 72048541 72048541 1 + G A COAD 72048554 + 72048534 72048574 41 GTCTTCCGCCTCCCTGAGGACCAAGCTGTCATTAACAGGTA GTCTTCCACCTCCCTGAGGACCAAGCTGTCATTAACAGGTA < 41bp 1 0.212389666184233 1 0.0471792817115784 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHODH ENSG00000102967 CDS Human protein_coding chr16:72048554 chr16:72048541 nonsynonymous SNV 0.971 5 8 hm5C_associated_SNPs_20476 0 0 1 3 1 DHODH chr16:72048571 5'GT 72048571 Upstream 31bp
chr16 72048541 72048541 1 + G A COAD 72048555 + 72048535 72048575 41 TCTTCCGCCTCCCTGAGGACCAAGCTGTCATTAACAGGTAG TCTTCCACCTCCCTGAGGACCAAGCTGTCATTAACAGGTAG < 41bp 1 0.417208767885187 1 0.361894905567169 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHODH ENSG00000102967 CDS Human protein_coding chr16:72048555 chr16:72048541 nonsynonymous SNV 0.971 5 7 hm5C_associated_SNPs_20477 0 0 1 3 1 DHODH chr16:72048571 5'GT 72048571 Upstream 31bp
chr16 72048541 72048541 1 + G A COAD 72048559 + 72048539 72048579 41 CCGCCTCCCTGAGGACCAAGCTGTCATTAACAGGTAGGTGA CCACCTCCCTGAGGACCAAGCTGTCATTAACAGGTAGGTGA < 41bp 1 0.263632984898471 1 0.0613999962806702 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHODH ENSG00000102967 CDS Human protein_coding chr16:72048559 chr16:72048541 nonsynonymous SNV 0.971 5 3 hm5C_associated_SNPs_20478 0 0 1 3 1 DHODH chr16:72048571 5'GT 72048571 Upstream 31bp
chr16 2122324 2122324 1 + C A COAD 2122321 + 2122301 2122341 41 TAAAGTGCTCATCTTTACTTCCCCTTGCAGTGTGGACCAGC TAAAGTGCTCATCTTTACTTCCCATTGCAGTGTGGACCAGC < 41bp 1 0.0791515205844313 1 0.0275648236274719 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2122321 chr16:2122324 nonsynonymous SNV 0.406 4 24 hm5C_associated_SNPs_20479 0 0 1 0 2 TSC2 chr16:2122242 3'AG 2122242 Downstream 83bp
chr16 2122324 2122324 1 + C A COAD 2122321 + 2122301 2122341 41 TAAAGTGCTCATCTTTACTTCCCCTTGCAGTGTGGACCAGC TAAAGTGCTCATCTTTACTTCCCATTGCAGTGTGGACCAGC < 41bp 1 0.0791515205844313 1 0.0275648236274719 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2122321 chr16:2122324 nonsynonymous SNV 0.406 4 24 hm5C_associated_SNPs_20479 0 0 1 0 2 TSC2 chr16:2122364 5'GT 2122364 Upstream 41bp
chr20 37570738 37570738 1 + T C COAD 37570736 + 37570716 37570756 41 TCTCAATTTCTGGATATGTGCATGGATCTGAAAGTTCATCC TCTCAATTTCTGGATATGTGCACGGATCTGAAAGTTCATCC < 41bp 1 0.721225905721582 1 0.11173751950264 experiment 0.557548188556837 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM83D ENSG00000101447 CDS Human protein_coding chr20:37570736 chr20:37570738 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_20480 0 0 1 0 1 FAM83D chr20:37570769 5'GT 37570769 Upstream 32bp
chr14 104638914 104638914 1 + C T COAD 104638925 + 104638905 104638945 41 CCCCTAGGCCGAAGTCTGCTCGGGGACCGTGGCCGACGTGC CCCCTAGGCTGAAGTCTGCTCGGGGACCGTGGCCGACGTGC < 41bp 1 0.747354739036198 1 0.922887206077576 experiment 0.505290521927604 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104638925 chr14:104638914 synonymous SNV . 0 10 hm5C_associated_SNPs_20481 0 0 0 0 2 KIF26A chr14:104638912 3'AG 104638912 Downstream 3bp
chr14 104638914 104638914 1 + C T COAD 104638925 + 104638905 104638945 41 CCCCTAGGCCGAAGTCTGCTCGGGGACCGTGGCCGACGTGC CCCCTAGGCTGAAGTCTGCTCGGGGACCGTGGCCGACGTGC < 41bp 1 0.747354739036198 1 0.922887206077576 experiment 0.505290521927604 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104638925 chr14:104638914 synonymous SNV . 0 10 hm5C_associated_SNPs_20481 0 0 0 0 2 KIF26A chr14:104639005 5'GT 104639005 Upstream 92bp
chr16 1823715 1823715 1 + A C COAD 1823707 + 1823687 1823727 41 TCCTCTCCCCCGGTCCCAGCCATCCTGGAAGACGCCGGTGC TCCTCTCCCCCGGTCCCAGCCATCCTGGCAGACGCCGGTGC < 41bp 1 0.159227394601065 1 0.271699607372284 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EME2 ENSG00000197774 CDS Human protein_coding chr16:1823707 chr16:1823715 nonsynonymous SNV 0.785 3 29 hm5C_associated_SNPs_20482 0 0 1 0 1 EME2 chr16:1823706 3'AG 1823706 Downstream 10bp
chr2 9528458 9528458 1 + C A COAD 9528446 + 9528426 9528466 41 AGTCCCAACCGGCGGGAAGACCGGCCCATCAGCTTCTACCA AGTCCCAACCGGCGGGAAGACCGGCCCATCAGATTCTACCA < 41bp 1 0.424659679834315 1 0.526585519313812 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ASAP2 ENSG00000151693 CDS Human protein_coding chr2:9528446 chr2:9528458 nonsynonymous SNV 0.999 4 33 hm5C_associated_SNPs_20483 0 0 1 0 1 ASAP2 chr2:9528423 3'AG 9528423 Downstream 36bp
chr20 60701443 60701443 1 + G A COAD 60701448 + 60701428 60701468 41 GGCGCCCTACGGCCCGCTGGCGGCCAGCTCCCTGCTCAGCC GGCGCCCTACGGCCCACTGGCGGCCAGCTCCCTGCTCAGCC < 41bp 1 0.675039488676507 1 0.452198296785355 experiment 0.649921022646985 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSM14B ENSG00000149657 CDS Human protein_coding chr20:60701448 chr20:60701443 synonymous SNV . 0 16 hm5C_associated_SNPs_20484 0 0 1 0 2 LSM14B chr20:60701360 3'AG 60701360 Downstream 84bp
chr20 60701443 60701443 1 + G A COAD 60701448 + 60701428 60701468 41 GGCGCCCTACGGCCCGCTGGCGGCCAGCTCCCTGCTCAGCC GGCGCCCTACGGCCCACTGGCGGCCAGCTCCCTGCTCAGCC < 41bp 1 0.675039488676507 1 0.452198296785355 experiment 0.649921022646985 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSM14B ENSG00000149657 CDS Human protein_coding chr20:60701448 chr20:60701443 synonymous SNV . 0 16 hm5C_associated_SNPs_20484 0 0 1 0 2 LSM14B chr20:60701495 5'GT 60701495 Upstream 53bp
chr14 20943232 20943232 1 + G A COAD 20943217 + 20943197 20943237 41 GAGATAATTCAACCTGTGTCCTAGGTTTGGAGATCGTTTCC GAGATAATTCAACCTGTGTCCTAGGTTTGGAGATCATTTCC < 41bp 1 0.483608872228358 1 0.304251432418823 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNP ENSG00000198805 CDS Human protein_coding chr14:20943217 chr14:20943232 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_20485 0 0 1 0 1 PNP chr14:20943221 3'AG 20943221 Downstream 12bp
chr16 23700975 23700975 1 + G A COAD 23700976 + 23700956 23700996 41 CTGCACCTCAGCAACGGCAGCGTGCAGATCAACTTCTTCCA CTGCACCTCAGCAACGGCAACGTGCAGATCAACTTCTTCCA < 41bp 1 0.233215549075734 1 0.334613859653473 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700976 chr16:23700975 nonsynonymous SNV 0.913 2 20 hm5C_associated_SNPs_20486 0 0 1 0 1 PLK1 chr16:23700997 5'GT 23700997 Upstream 23bp
chrX 41201825 41201825 1 + G A COAD 41201835 + 41201815 41201855 41 AAATTTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATC AAATTTGAACATGGTGGAAACAGTCGCTGGTGTGACAAATC < 41bp 1 0.251223123826827 1 0.129067212343216 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201835 chrX:41201825 nonsynonymous SNV 0.997 3 11 hm5C_associated_SNPs_20487 0 0 1 0 2 DDX3X chrX:41201748 3'AG 41201748 Downstream 78bp
chrX 41201825 41201825 1 + G A COAD 41201835 + 41201815 41201855 41 AAATTTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATC AAATTTGAACATGGTGGAAACAGTCGCTGGTGTGACAAATC < 41bp 1 0.251223123826827 1 0.129067212343216 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201835 chrX:41201825 nonsynonymous SNV 0.997 3 11 hm5C_associated_SNPs_20487 0 0 1 0 2 DDX3X chrX:41201906 5'GT 41201906 Upstream 82bp
chrX 41201825 41201825 1 + G A COAD 41201839 + 41201819 41201859 41 TTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATCAGAT TTGAACATGGTGGAAACAGTCGCTGGTGTGACAAATCAGAT < 41bp 1 0.711096708849929 1 0.159530758857727 experiment 0.577806582300142 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201839 chrX:41201825 nonsynonymous SNV 0.997 3 7 hm5C_associated_SNPs_20488 0 0 1 0 2 DDX3X chrX:41201748 3'AG 41201748 Downstream 78bp
chrX 41201825 41201825 1 + G A COAD 41201839 + 41201819 41201859 41 TTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATCAGAT TTGAACATGGTGGAAACAGTCGCTGGTGTGACAAATCAGAT < 41bp 1 0.711096708849929 1 0.159530758857727 experiment 0.577806582300142 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201839 chrX:41201825 nonsynonymous SNV 0.997 3 7 hm5C_associated_SNPs_20488 0 0 1 0 2 DDX3X chrX:41201906 5'GT 41201906 Upstream 82bp
chr3 49720279 49720279 1 + C T COAD 49720263 + 49720243 49720283 41 TTCCTGGGGCTGCAACAGCTCGGTGTCTTGCAGGTGCGTGG TTCCTGGGGCTGCAACAGCTCGGTGTCTTGCAGGTGTGTGG < 41bp 1 0.405120365654572 1 0.513238728046417 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49720263 chr3:49720279 synonymous SNV . 0 37 hm5C_associated_SNPs_20491 0 0 1 0 3 APEH chr3:49720261 3'AG 49720261 Downstream 19bp
chr3 49720279 49720279 1 + C T COAD 49720263 + 49720243 49720283 41 TTCCTGGGGCTGCAACAGCTCGGTGTCTTGCAGGTGCGTGG TTCCTGGGGCTGCAACAGCTCGGTGTCTTGCAGGTGTGTGG < 41bp 1 0.405120365654572 1 0.513238728046417 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49720263 chr3:49720279 synonymous SNV . 0 37 hm5C_associated_SNPs_20491 0 0 1 0 3 APEH chr3:49720276 3'AG 49720276 Downstream 4bp
chr3 49720279 49720279 1 + C T COAD 49720263 + 49720243 49720283 41 TTCCTGGGGCTGCAACAGCTCGGTGTCTTGCAGGTGCGTGG TTCCTGGGGCTGCAACAGCTCGGTGTCTTGCAGGTGTGTGG < 41bp 1 0.405120365654572 1 0.513238728046417 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49720263 chr3:49720279 synonymous SNV . 0 37 hm5C_associated_SNPs_20491 0 0 1 0 3 APEH chr3:49720378 5'GT 49720378 Upstream 100bp
chr1 24996685 24996685 1 + C T COAD 24996673 + 24996653 24996693 41 CTCCCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAA CTCCCGATCTGTCTCCGGGTCTCCTGAGCCAGTAGCTAAAA < 41bp 1 0.565716979042106 1 0.104140728712082 experiment 0.868566041915789 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996673 chr1:24996685 nonsynonymous SNV 0.999 1 33 hm5C_associated_SNPs_20494 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 75bp
chr1 24996685 24996685 1 + C T COAD 24996676 + 24996656 24996696 41 CCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGC CCGATCTGTCTCCGGGTCTCCTGAGCCAGTAGCTAAAAAGC < 41bp 1 0.578346269987622 1 0.543878138065338 experiment 0.843307460024757 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996676 chr1:24996685 nonsynonymous SNV 0.999 1 30 hm5C_associated_SNPs_20495 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 75bp
chr1 24996685 24996685 1 + C T COAD 24996681 + 24996661 24996701 41 CTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCA CTGTCTCCGGGTCTCCTGAGCCAGTAGCTAAAAAGCCCCCA < 41bp 1 0.331943879140862 1 0.38462969660759 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996681 chr1:24996685 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_20496 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 75bp
chr1 24996685 24996685 1 + C T COAD 24996688 + 24996668 24996708 41 CGGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTC CGGGTCTCCTGAGCCAGTAGCTAAAAAGCCCCCAGCACCTC < 41bp 1 0.731472203720931 1 0.477102220058441 experiment 0.537055592558137 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996688 chr1:24996685 nonsynonymous SNV 0.999 1 18 hm5C_associated_SNPs_20497 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 75bp
chr1 24996685 24996685 1 + C T COAD 24996696 + 24996676 24996716 41 CTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCC CTGAGCCAGTAGCTAAAAAGCCCCCAGCACCTCCATCCCCC < 41bp 1 0.361679130517757 1 0.0699065327644348 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996696 chr1:24996685 nonsynonymous SNV 0.999 1 10 hm5C_associated_SNPs_20498 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 75bp
chr1 24996685 24996685 1 + C T COAD 24996697 + 24996677 24996717 41 TGAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCCG TGAGCCAGTAGCTAAAAAGCCCCCAGCACCTCCATCCCCCG < 41bp 1 0.679942642530642 1 0.110869556665421 experiment 0.640114714938716 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996697 chr1:24996685 nonsynonymous SNV 0.999 1 9 hm5C_associated_SNPs_20499 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 75bp
chr1 24996685 24996685 1 + C T COAD 24996698 + 24996678 24996718 41 GAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGT GAGCCAGTAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGT < 41bp 1 0.241181083056882 1 0.0824381709098816 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996698 chr1:24996685 nonsynonymous SNV 0.999 1 8 hm5C_associated_SNPs_20500 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 75bp
chr1 24996685 24996685 1 + C T COAD 24996703 + 24996683 24996723 41 AGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGT AGTAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGT < 41bp 1 0.284399323054235 1 0.122780114412308 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996703 chr1:24996685 nonsynonymous SNV 0.999 1 3 hm5C_associated_SNPs_20501 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 75bp
chr1 24996685 24996685 1 + C T COAD 24996705 + 24996685 24996725 41 CAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGTCT TAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGTCT < 41bp 1 0.0529747263009247 1 0.0174517631530762 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996705 chr1:24996685 nonsynonymous SNV 0.999 1 1 hm5C_associated_SNPs_20502 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 75bp
chr1 198231755 198231755 1 + A G COAD 198231736 + 198231716 198231756 41 AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATGG < 41bp 1 0.166525003481408 1 0.104774653911591 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231736 chr1:198231755 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_20507 0 0 0 0 2 NEK7 chr1:198231705 3'AG 198231705 Downstream 51bp
chr1 198231755 198231755 1 + A G COAD 198231736 + 198231716 198231756 41 AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATGG < 41bp 1 0.166525003481408 1 0.104774653911591 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231736 chr1:198231755 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_20507 0 0 0 0 2 NEK7 chr1:198231767 5'GT 198231767 Upstream 13bp
chr1 198231755 198231755 1 + A G COAD 198231746 + 198231726 198231766 41 AAAGCACGTGCTGATTGCATCAAAGAAATAGATCTTCTTAA AAAGCACGTGCTGATTGCATCAAAGAAATGGATCTTCTTAA < 41bp 1 0.316769495802762 1 0.615060687065125 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231746 chr1:198231755 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_20508 0 0 0 0 2 NEK7 chr1:198231705 3'AG 198231705 Downstream 51bp
chr1 198231755 198231755 1 + A G COAD 198231746 + 198231726 198231766 41 AAAGCACGTGCTGATTGCATCAAAGAAATAGATCTTCTTAA AAAGCACGTGCTGATTGCATCAAAGAAATGGATCTTCTTAA < 41bp 1 0.316769495802762 1 0.615060687065125 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231746 chr1:198231755 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_20508 0 0 0 0 2 NEK7 chr1:198231767 5'GT 198231767 Upstream 13bp
chr1 198231755 198231755 1 + A G COAD 198231762 + 198231742 198231782 41 GCATCAAAGAAATAGATCTTCTTAAGGTAATTAATGAACTG GCATCAAAGAAATGGATCTTCTTAAGGTAATTAATGAACTG < 41bp 1 0.496250794804002 1 0.164832890033722 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231762 chr1:198231755 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_20509 0 0 0 0 2 NEK7 chr1:198231705 3'AG 198231705 Downstream 51bp
chr1 198231755 198231755 1 + A G COAD 198231762 + 198231742 198231782 41 GCATCAAAGAAATAGATCTTCTTAAGGTAATTAATGAACTG GCATCAAAGAAATGGATCTTCTTAAGGTAATTAATGAACTG < 41bp 1 0.496250794804002 1 0.164832890033722 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231762 chr1:198231755 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_20509 0 0 0 0 2 NEK7 chr1:198231767 5'GT 198231767 Upstream 13bp
chr12 121858086 121858086 1 + T C COAD 121858092 + 121858072 121858112 41 ACAGAAGATGATGATGACGACGATGATGAGGATGATGATGA ACAGAAGATGATGACGACGACGATGATGAGGATGATGATGA < 41bp 1 0.363145974774843 1 0.290982663631439 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNF34 ENSG00000170633 CDS Human protein_coding chr12:121858092 chr12:121858086 synonymous SNV . 0 15 hm5C_associated_SNPs_20510 0 0 1 0 2 RNF34 chr12:121858045 3'AG 121858045 Downstream 42bp
chr12 121858086 121858086 1 + T C COAD 121858092 + 121858072 121858112 41 ACAGAAGATGATGATGACGACGATGATGAGGATGATGATGA ACAGAAGATGATGACGACGACGATGATGAGGATGATGATGA < 41bp 1 0.363145974774843 1 0.290982663631439 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNF34 ENSG00000170633 CDS Human protein_coding chr12:121858092 chr12:121858086 synonymous SNV . 0 15 hm5C_associated_SNPs_20510 0 0 1 0 2 RNF34 chr12:121858137 5'GT 121858137 Upstream 52bp
chr21 38853079 38853079 1 + T C COAD 38853089 + 38853069 38853109 41 GAAAAGTGGATGGATCGTTACGAAATTGACTCCTTGATAGG GAAAAGTGGACGGATCGTTACGAAATTGACTCCTTGATAGG < 41bp 1 0.630850823396587 1 0.766120195388794 experiment 0.738298353206825 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38853089 chr21:38853079 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_20511 0 0 1 0 1 DYRK1A chr21:38853128 5'GT 38853128 Upstream 50bp
chr15 22945047 22945047 1 + C T COAD 22945057 + 22945037 22945077 41 CAGGTGGTCACGGGCTCGGGCCGCCAGGAGGCCCAGAAGAC CAGGTGGTCATGGGCTCGGGCCGCCAGGAGGCCCAGAAGAC < 41bp 1 0.167372198284732 1 0.162616163492203 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22945057 chr15:22945047 nonsynonymous SNV . 0 11 hm5C_associated_SNPs_20513 0 0 1 0 1 CYFIP1 chr15:22945040 3'AG 22945040 Downstream 8bp
chr7 142460327 142460327 1 + G A COAD 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAA < 41bp 1 0.210878748724131 1 0.0886127054691315 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460327 nonsynonymous SNV 0.000 2 41 hm5C_associated_SNPs_20514 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 46bp
chr7 142460327 142460327 1 + G A COAD 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAA < 41bp 1 0.210878748724131 1 0.0886127054691315 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460327 nonsynonymous SNV 0.000 2 41 hm5C_associated_SNPs_20514 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 92bp
chr7 142460327 142460327 1 + G A COAD 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAACCAGGCTA < 41bp 1 0.44801677688428 1 0.339534997940063 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460327 nonsynonymous SNV 0.000 2 33 hm5C_associated_SNPs_20515 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 46bp
chr7 142460327 142460327 1 + G A COAD 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAACCAGGCTA < 41bp 1 0.44801677688428 1 0.339534997940063 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460327 nonsynonymous SNV 0.000 2 33 hm5C_associated_SNPs_20515 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 92bp
chr7 142460327 142460327 1 + G A COAD 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGGATGCTCCTGTGCTGAACCAGGCTAAG < 41bp 1 0.251075505922477 1 0.159035176038742 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460327 nonsynonymous SNV 0.000 2 31 hm5C_associated_SNPs_20516 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 46bp
chr7 142460327 142460327 1 + G A COAD 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGGATGCTCCTGTGCTGAACCAGGCTAAG < 41bp 1 0.251075505922477 1 0.159035176038742 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460327 nonsynonymous SNV 0.000 2 31 hm5C_associated_SNPs_20516 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 92bp
chr7 142460327 142460327 1 + G A COAD 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGGATGCTCCTGTGCTGAACCAGGCTAAGT < 41bp 1 0.462772494267543 1 0.208800733089447 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460327 nonsynonymous SNV 0.000 2 30 hm5C_associated_SNPs_20517 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 46bp
chr7 142460327 142460327 1 + G A COAD 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGGATGCTCCTGTGCTGAACCAGGCTAAGT < 41bp 1 0.462772494267543 1 0.208800733089447 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460327 nonsynonymous SNV 0.000 2 30 hm5C_associated_SNPs_20517 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 92bp
chr7 142460327 142460327 1 + G A COAD 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATGCTCCTGTGCTGAACCAGGCTAAGTGTGAA < 41bp 1 0.606536858755723 1 0.149352729320526 experiment 0.786926282488554 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460327 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_20518 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 46bp
chr7 142460327 142460327 1 + G A COAD 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATGCTCCTGTGCTGAACCAGGCTAAGTGTGAA < 41bp 1 0.606536858755723 1 0.149352729320526 experiment 0.786926282488554 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460327 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_20518 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 92bp
chr7 142460327 142460327 1 + G A COAD 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTCCTGTGCTGAACCAGGCTAAGTGTGAAGCCTC < 41bp 1 0.366374160347501 1 0.147318631410599 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460327 nonsynonymous SNV 0.000 2 20 hm5C_associated_SNPs_20519 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 46bp
chr7 142460327 142460327 1 + G A COAD 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTCCTGTGCTGAACCAGGCTAAGTGTGAAGCCTC < 41bp 1 0.366374160347501 1 0.147318631410599 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460327 nonsynonymous SNV 0.000 2 20 hm5C_associated_SNPs_20519 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 92bp
chr7 142460327 142460327 1 + G A COAD 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTCCTGTGCTGAACCAGGCTAAGTGTGAAGCCTCC < 41bp 1 0.604187327573883 1 0.664072811603546 experiment 0.791625344852233 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460327 nonsynonymous SNV 0.000 2 19 hm5C_associated_SNPs_20520 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 46bp
chr7 142460327 142460327 1 + G A COAD 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTCCTGTGCTGAACCAGGCTAAGTGTGAAGCCTCC < 41bp 1 0.604187327573883 1 0.664072811603546 experiment 0.791625344852233 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460327 nonsynonymous SNV 0.000 2 19 hm5C_associated_SNPs_20520 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 92bp
chr7 142460327 142460327 1 + G A COAD 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTGTGCTGAACCAGGCTAAGTGTGAAGCCTCCTACC < 41bp 1 0.39479300826976 1 0.0891532599925995 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460327 nonsynonymous SNV 0.000 2 15 hm5C_associated_SNPs_20521 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 46bp
chr7 142460327 142460327 1 + G A COAD 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTGTGCTGAACCAGGCTAAGTGTGAAGCCTCCTACC < 41bp 1 0.39479300826976 1 0.0891532599925995 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460327 nonsynonymous SNV 0.000 2 15 hm5C_associated_SNPs_20521 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 92bp
chr7 142460327 142460327 1 + G A COAD 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAACCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA < 41bp 1 0.0388572103420721 1 0.153243720531464 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460327 nonsynonymous SNV 0.000 2 3 hm5C_associated_SNPs_20522 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 46bp
chr7 142460327 142460327 1 + G A COAD 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAACCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA < 41bp 1 0.0388572103420721 1 0.153243720531464 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460327 nonsynonymous SNV 0.000 2 3 hm5C_associated_SNPs_20522 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 92bp
chr7 142460327 142460327 1 + G A COAD 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AACCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC < 41bp 1 0.235701270534826 1 0.50637024641037 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460327 nonsynonymous SNV 0.000 2 2 hm5C_associated_SNPs_20523 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 46bp
chr7 142460327 142460327 1 + G A COAD 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AACCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC < 41bp 1 0.235701270534826 1 0.50637024641037 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460327 nonsynonymous SNV 0.000 2 2 hm5C_associated_SNPs_20523 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 92bp
chr6 160477541 160477541 1 + C T COAD 160477524 + 160477504 160477544 41 CTGTGGAACACAGAGGCTGCCTGTCCCATTCAGACAACGAC CTGTGGAACACAGAGGCTGCCTGTCCCATTCAGACAATGAC < 41bp 1 0.032220178181498 1 0.0757785737514496 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160477524 chr6:160477541 nonsynonymous SNV 0.074 0 38 hm5C_associated_SNPs_20524 0 0 1 0 2 IGF2R chr6:160477456 3'AG 160477456 Downstream 86bp
chr6 160477541 160477541 1 + C T COAD 160477524 + 160477504 160477544 41 CTGTGGAACACAGAGGCTGCCTGTCCCATTCAGACAACGAC CTGTGGAACACAGAGGCTGCCTGTCCCATTCAGACAATGAC < 41bp 1 0.032220178181498 1 0.0757785737514496 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160477524 chr6:160477541 nonsynonymous SNV 0.074 0 38 hm5C_associated_SNPs_20524 0 0 1 0 2 IGF2R chr6:160477557 5'GT 160477557 Upstream 17bp
chr11 61916012 61916012 1 + G A COAD 61915994 + 61915974 61916014 41 TGCGGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAGGAG TGCGGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAGAAG < 41bp 1 0.589645229074367 1 0.704985618591309 experiment 0.820709541851266 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61915994 chr11:61916012 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_20525 0 0 1 0 1 INCENP chr11:61915948 3'AG 61915948 Downstream 65bp
chr11 61916012 61916012 1 + G A COAD 61915997 + 61915977 61916017 41 GGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAGGAGAAG GGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAGAAGAAG < 41bp 1 0.349949657853287 1 0.569162607192993 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61915997 chr11:61916012 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_20526 0 0 1 0 1 INCENP chr11:61915948 3'AG 61915948 Downstream 65bp
chr17 12028670 12028670 1 + G T COAD 12028682 + 12028662 12028702 41 GATGTCTGGAGTTTGGGGATCACATTGGTATGTTTATGCTG GATGTCTGTAGTTTGGGGATCACATTGGTATGTTTATGCTG < 41bp 1 0.383231020534006 1 0.169388860464096 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12028682 chr17:12028670 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_20527 0 0 1 0 2 MAP2K4 chr17:12028611 3'AG 12028611 Downstream 60bp
chr17 12028670 12028670 1 + G T COAD 12028682 + 12028662 12028702 41 GATGTCTGGAGTTTGGGGATCACATTGGTATGTTTATGCTG GATGTCTGTAGTTTGGGGATCACATTGGTATGTTTATGCTG < 41bp 1 0.383231020534006 1 0.169388860464096 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12028682 chr17:12028670 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_20527 0 0 1 0 2 MAP2K4 chr17:12028688 5'GT 12028688 Upstream 19bp
chr19 17273174 17273174 1 + C T COAD 17273167 + 17273147 17273187 41 TCTGTGTCCACAGGCCATCACTGCCCGCGACTCCATGGCCA TCTGTGTCCACAGGCCATCACTGCCCGTGACTCCATGGCCA < 41bp 1 0.240516863465168 1 0.13729602098465 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17273167 chr19:17273174 synonymous SNV . 0 28 hm5C_associated_SNPs_20528 0 0 1 0 1 MYO9B chr19:17273160 3'AG 17273160 Downstream 15bp
chr3 42264530 42264530 1 + T G COAD 42264511 + 42264491 42264531 41 GGTGGCCACACCATGCACTCCACGGAGACTGAGCCTGGCTG GGTGGCCACACCATGCACTCCACGGAGACTGAGCCTGGCGG < 41bp 1 0.526571258991064 1 0.387465059757233 experiment 0.946857482017872 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42264511 chr3:42264530 synonymous SNV . 0 40 hm5C_associated_SNPs_20529 0 0 1 0 1 TRAK1 chr3:42264434 3'AG 42264434 Downstream 97bp
chr1 228468281 228468281 1 + C T COAD 228468289 + 228468269 228468309 41 TCCGCAGAGGAGCGCGGCACCCTGGCCCTGCAGTGTGAAGT TCCGCAGAGGAGTGCGGCACCCTGGCCCTGCAGTGTGAAGT < 41bp 1 0.0518551986074202 1 0.078603208065033 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228468289 chr1:228468281 nonsynonymous SNV 0.001 3 13 hm5C_associated_SNPs_20532 0 0 0 0 1 OBSCN chr1:228468231 3'AG 228468231 Downstream 51bp
chr5 139866560 139866560 1 + G A COAD 139866547 + 139866527 139866567 41 TGAGTTGACTTTTTAGGTGCCACGTGTGCCAACGCATACAC TGAGTTGACTTTTTAGGTGCCACGTGTGCCAACACATACAC < 41bp 1 0.449823249284672 1 0.186759859323502 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139866547 chr5:139866560 synonymous SNV . 0 34 hm5C_associated_SNPs_20533 0 0 1 0 2 ANKHD1;ANKHD1-EIF4EBP3 chr5:139866543 3'AG 139866543 Downstream 18bp
chr5 139866560 139866560 1 + G A COAD 139866547 + 139866527 139866567 41 TGAGTTGACTTTTTAGGTGCCACGTGTGCCAACGCATACAC TGAGTTGACTTTTTAGGTGCCACGTGTGCCAACACATACAC < 41bp 1 0.449823249284672 1 0.186759859323502 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139866547 chr5:139866560 synonymous SNV . 0 34 hm5C_associated_SNPs_20533 0 0 1 0 2 ANKHD1;ANKHD1-EIF4EBP3 chr5:139866645 5'GT 139866645 Upstream 86bp
chr9 91083305 91083305 1 + A G COAD 91083287 + 91083267 91083307 41 TTTTTTTTTTTAATCCCCAGCGACATCTCGAATCAGCGATG TTTTTTTTTTTAATCCCCAGCGACATCTCGAATCAGCGGTG < 41bp 1 0.365403521278532 1 0.641505897045135 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPIN1 ENSG00000106723 CDS Human protein_coding chr9:91083287 chr9:91083305 nonsynonymous SNV 0.987 1 39 hm5C_associated_SNPs_20535 0 0 1 0 1 SPIN1 chr9:91083287 3'AG 91083287 Downstream 19bp
chr2 238976790 238976790 1 + C T COAD 238976802 + 238976782 238976822 41 AATCTTCACTTCCGGGGGCACTGAGGTAAAGCTTCTGAACA AATCTTCATTTCCGGGGGCACTGAGGTAAAGCTTCTGAACA < 41bp 1 0.396815331803532 1 0.17165008187294 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCLY ENSG00000132330 CDS Human protein_coding chr2:238976802 chr2:238976790 nonsynonymous SNV 0.650 5 9 hm5C_associated_SNPs_20536 0 0 1 0 2 SCLY chr2:238976706 3'AG 238976706 Downstream 85bp
chr2 238976790 238976790 1 + C T COAD 238976802 + 238976782 238976822 41 AATCTTCACTTCCGGGGGCACTGAGGTAAAGCTTCTGAACA AATCTTCATTTCCGGGGGCACTGAGGTAAAGCTTCTGAACA < 41bp 1 0.396815331803532 1 0.17165008187294 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCLY ENSG00000132330 CDS Human protein_coding chr2:238976802 chr2:238976790 nonsynonymous SNV 0.650 5 9 hm5C_associated_SNPs_20536 0 0 1 0 2 SCLY chr2:238976806 5'GT 238976806 Upstream 17bp
chr13 26956983 26956983 1 + T C COAD 26956984 + 26956964 26957004 41 TTTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAA TTTTAGTTATGGGTGAAGGCCCTGAGCGAGGAAGAGTAAAA < 41bp 1 0.181524382894622 1 0.105451673269272 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CDK8 ENSG00000132964 CDS Human protein_coding chr13:26956984 chr13:26956983 synonymous SNV . 0 20 hm5C_associated_SNPs_20538 0 0 1 0 2 CDK8 chr13:26956951 3'AG 26956951 Downstream 33bp
chr13 26956983 26956983 1 + T C COAD 26956984 + 26956964 26957004 41 TTTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAA TTTTAGTTATGGGTGAAGGCCCTGAGCGAGGAAGAGTAAAA < 41bp 1 0.181524382894622 1 0.105451673269272 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CDK8 ENSG00000132964 CDS Human protein_coding chr13:26956984 chr13:26956983 synonymous SNV . 0 20 hm5C_associated_SNPs_20538 0 0 1 0 2 CDK8 chr13:26957008 5'GT 26957008 Upstream 26bp
chr2 32673990 32673990 1 + C A COAD 32673982 + 32673962 32674002 41 GTCAGATGAAATTGATTTATCAGATGTCCTTTCAGGTAGTG GTCAGATGAAATTGATTTATCAGATGTCATTTCAGGTAGTG < 41bp 1 0.144969131090884 1 0.414455533027649 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673982 chr2:32673990 nonsynonymous SNV 0.999 1 29 hm5C_associated_SNPs_20542 0 0 1 0 1 BIRC6 chr2:32673996 5'GT 32673996 Upstream 7bp
chr2 32673990 32673990 1 + C A COAD 32673989 + 32673969 32674009 41 GAAATTGATTTATCAGATGTCCTTTCAGGTAGTGATTTCTT GAAATTGATTTATCAGATGTCATTTCAGGTAGTGATTTCTT < 41bp 1 0.0131628747405202 1 0.0210238099098206 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673989 chr2:32673990 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_20543 0 0 1 0 1 BIRC6 chr2:32673996 5'GT 32673996 Upstream 7bp
chr2 32673990 32673990 1 + C A COAD 32673994 + 32673974 32674014 41 TGATTTATCAGATGTCCTTTCAGGTAGTGATTTCTTTTATT TGATTTATCAGATGTCATTTCAGGTAGTGATTTCTTTTATT < 41bp 1 0.189517249950655 1 0.258821070194244 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673994 chr2:32673990 nonsynonymous SNV 0.999 1 17 hm5C_associated_SNPs_20544 0 0 1 0 1 BIRC6 chr2:32673996 5'GT 32673996 Upstream 7bp
chr15 25213177 25213177 1 + G C COAD 25213171 + 25213151 25213191 41 GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA GGCATTCTTAGCTGAGACACCAAGAGCTGGTTAAAGCCATA < 41bp 1 0.778622662256221 1 0.493186950683594 experiment 0.442754675487558 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNURF ENSG00000214265;ENSG00000273173 CDS Human other chr15:25213171 chr15:25213177 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_20546 0 0 0 2 2 SNURF chr15:25213079 3'AG 25213079 Downstream 99bp
chr15 25213177 25213177 1 + G C COAD 25213171 + 25213151 25213191 41 GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA GGCATTCTTAGCTGAGACACCAAGAGCTGGTTAAAGCCATA < 41bp 1 0.778622662256221 1 0.493186950683594 experiment 0.442754675487558 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNURF ENSG00000214265;ENSG00000273173 CDS Human other chr15:25213171 chr15:25213177 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_20546 0 0 0 2 2 SNHG14 chr15:25213229 5'GT 25213229 Upstream 53bp
chr16 31235570 31235570 1 + C T COAD 31235556 + 31235536 31235576 41 GCACCCGAGCCTGGTGGTGTCTTCCTCTGGCCGCCGCGTGG GCACCCGAGCCTGGTGGTGTCTTCCTCTGGCCGCTGCGTGG < 41bp 1 0.276708987976032 1 0.0725590884685516 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31235556 chr16:31235570 nonsynonymous SNV 0.974 0 35 hm5C_associated_SNPs_20548 0 0 0 0 1 TRIM72 chr16:31235502 3'AG 31235502 Downstream 69bp
chr21 38865413 38865413 1 + G A COAD 38865404 + 38865384 38865424 41 CCTTGCCATTGATATGTGGTCCCTCGGGTGTATTTTGGTTG CCTTGCCATTGATATGTGGTCCCTCGGGTATATTTTGGTTG < 41bp 1 0.123494660122221 1 0.0566667914390564 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38865404 chr21:38865413 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_20549 0 0 1 0 2 DYRK1A chr21:38865319 3'AG 38865319 Downstream 95bp
chr21 38865413 38865413 1 + G A COAD 38865404 + 38865384 38865424 41 CCTTGCCATTGATATGTGGTCCCTCGGGTGTATTTTGGTTG CCTTGCCATTGATATGTGGTCCCTCGGGTATATTTTGGTTG < 41bp 1 0.123494660122221 1 0.0566667914390564 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38865404 chr21:38865413 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_20549 0 0 1 0 2 DYRK1A chr21:38865465 5'GT 38865465 Upstream 53bp
chr3 58092574 58092574 1 + G A COAD 58092593 + 58092573 58092613 41 AGCCACGGGAGGCTACAACCCTGATCTGGTGAATCAGCTGC AACCACGGGAGGCTACAACCCTGATCTGGTGAATCAGCTGC < 41bp 1 0.356152102931296 1 0.220216125249863 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58092593 chr3:58092574 nonsynonymous SNV 0.488 2 2 hm5C_associated_SNPs_20550 0 0 1 0 1 FLNB chr3:58092600 5'GT 58092600 Upstream 27bp
chr11 6629279 6629279 1 + C T COAD 6629293 + 6629273 6629313 41 AAGGGACGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCC AAGGGATGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCC < 41bp 1 0.24775960783338 1 0.392025291919708 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6629293 chr11:6629279 synonymous SNV . 0 7 hm5C_associated_SNPs_20552 0 0 1 0 1 ILK chr11:6629276 3'AG 6629276 Downstream 4bp
chr11 6629279 6629279 1 + C T COAD 6629294 + 6629274 6629314 41 AGGGACGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCCG AGGGATGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCCG < 41bp 1 0.212075107100917 1 0.0995577573776245 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6629294 chr11:6629279 synonymous SNV . 0 6 hm5C_associated_SNPs_20553 0 0 1 0 1 ILK chr11:6629276 3'AG 6629276 Downstream 4bp
chr20 2844843 2844843 1 + C T COAD 2844855 + 2844835 2844875 41 ATGAGCCACGCTCAGGGGAGCAGGTACCCCTTCTCCTAAAG ATGAGCCATGCTCAGGGGAGCAGGTACCCCTTCTCCTAAAG < 41bp 1 0.500159242630505 1 0.436193019151688 experiment 0.99968151473899 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2844855 chr20:2844843 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_20556 0 0 1 0 1 VPS16 chr20:2844933 5'GT 2844933 Upstream 91bp
chr9 71842728 71842728 1 + C T COAD 71842734 + 71842714 71842754 41 CTCCAGAGGAGAGACGTCATCAGTATTCTGATTATGATTAT CTCCAGAGGAGAGATGTCATCAGTATTCTGATTATGATTAT < 41bp 1 0.608040590058577 1 0.534609854221344 experiment 0.783918819882845 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TJP2 ENSG00000119139 CDS Human protein_coding chr9:71842734 chr9:71842728 nonsynonymous SNV 0.997 3 15 hm5C_associated_SNPs_20557 1 0 1 0 2 TJP2 chr9:71842681 3'AG 71842681 Downstream 48bp
chr9 71842728 71842728 1 + C T COAD 71842734 + 71842714 71842754 41 CTCCAGAGGAGAGACGTCATCAGTATTCTGATTATGATTAT CTCCAGAGGAGAGATGTCATCAGTATTCTGATTATGATTAT < 41bp 1 0.608040590058577 1 0.534609854221344 experiment 0.783918819882845 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TJP2 ENSG00000119139 CDS Human protein_coding chr9:71842734 chr9:71842728 nonsynonymous SNV 0.997 3 15 hm5C_associated_SNPs_20557 1 0 1 0 2 TJP2 chr9:71842789 5'GT 71842789 Upstream 62bp
chr1 26885393 26885393 1 + C T COAD 26885380 + 26885360 26885400 41 GCCACCGGCCTGATGGAAGACGACGGCAAGCCTCGTGCCCC GCCACCGGCCTGATGGAAGACGACGGCAAGCCTTGTGCCCC < 41bp 1 0.750981832271709 1 0.704191088676453 experiment 0.498036335456582 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26885380 chr1:26885393 nonsynonymous SNV 0.736 0 34 hm5C_associated_SNPs_20559 0 0 1 0 2 RPS6KA1 chr1:26885298 3'AG 26885298 Downstream 96bp
chr1 26885393 26885393 1 + C T COAD 26885380 + 26885360 26885400 41 GCCACCGGCCTGATGGAAGACGACGGCAAGCCTCGTGCCCC GCCACCGGCCTGATGGAAGACGACGGCAAGCCTTGTGCCCC < 41bp 1 0.750981832271709 1 0.704191088676453 experiment 0.498036335456582 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26885380 chr1:26885393 nonsynonymous SNV 0.736 0 34 hm5C_associated_SNPs_20559 0 0 1 0 2 RPS6KA1 chr1:26885428 5'GT 26885428 Upstream 36bp
chr6 42975948 42975948 1 + C T COAD 42975958 + 42975938 42975978 41 GGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGAG GGTTCATCTATGAGACGGAGCATCACAACGGGATTGCTGAG < 41bp 1 0.295615273540018 1 0.0487948358058929 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975958 chr6:42975948 synonymous SNV . 0 11 hm5C_associated_SNPs_20562 0 0 1 0 2 PPP2R5D chr6:42975939 3'AG 42975939 Downstream 10bp
chr6 42975948 42975948 1 + C T COAD 42975958 + 42975938 42975978 41 GGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGAG GGTTCATCTATGAGACGGAGCATCACAACGGGATTGCTGAG < 41bp 1 0.295615273540018 1 0.0487948358058929 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975958 chr6:42975948 synonymous SNV . 0 11 hm5C_associated_SNPs_20562 0 0 1 0 2 PPP2R5D chr6:42975998 5'GT 42975998 Upstream 51bp
chr1 37947355 37947355 1 + A G COAD 37947350 + 37947330 37947370 41 GGGATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGG GGGATCGTGGTTTCCAACGACACATGCCGTGACCTCCAAGG < 41bp 1 0.339007708010199 1 0.346810162067413 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947350 chr1:37947355 nonsynonymous SNV 0.840 4 26 hm5C_associated_SNPs_20563 0 0 0 0 1 ZC3H12A chr1:37947436 5'GT 37947436 Upstream 82bp
chr1 37947355 37947355 1 + A G COAD 37947352 + 37947332 37947372 41 GATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGGCG GATCGTGGTTTCCAACGACACATGCCGTGACCTCCAAGGCG < 41bp 1 0.319408180234867 1 0.149364799261093 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947352 chr1:37947355 nonsynonymous SNV 0.840 4 24 hm5C_associated_SNPs_20564 0 0 0 0 1 ZC3H12A chr1:37947436 5'GT 37947436 Upstream 82bp
chr16 77233391 77233391 1 + G T COAD 77233404 + 77233384 77233424 41 GCCAGAAGCTACTGAGGAGGCTGAAGGTAGTGAGGGCAAGT GCCAGAATCTACTGAGGAGGCTGAAGGTAGTGAGGGCAAGT < 41bp 1 0.780947284761593 1 0.370511651039124 experiment 0.438105430476813 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYCE1L ENSG00000205078 CDS Human protein_coding chr16:77233404 chr16:77233391 nonsynonymous SNV 0.001 0 8 hm5C_associated_SNPs_20565 0 0 1 0 1 SYCE1L chr16:77233409 5'GT 77233409 Upstream 19bp
chr17 72306157 72306157 1 + T C COAD 72306164 + 72306144 72306184 41 CCCCTTCAATAGGTGTGTGACGAGGCCCTCTTCTGCCTCCG CCCCTTCAATAGGCGTGTGACGAGGCCCTCTTCTGCCTCCG < 41bp 1 0.780694722287354 1 0.867522418498993 experiment 0.438610555425291 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72306164 chr17:72306157 nonsynonymous SNV 0.975 4 14 hm5C_associated_SNPs_20567 0 0 0 4 1 DNAI2 chr17:72306156 3'AG 72306156 Downstream 2bp
chr21 35169850 35169850 1 + G A COAD 35169864 + 35169844 35169884 41 TGGGTCGGCTTTTCCATCAACACCAAGAACCAGCTAAGCCA TGGGTCAGCTTTTCCATCAACACCAAGAACCAGCTAAGCCA < 41bp 1 0.798622202455603 1 0.266461670398712 experiment 0.402755595088794 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ITSN1 ENSG00000205726 CDS Human protein_coding chr21:35169864 chr21:35169850 nonsynonymous SNV 0.997 1 7 hm5C_associated_SNPs_20568 0 0 1 0 1 ITSN1 chr21:35169912 5'GT 35169912 Upstream 63bp
chr10 3176689 3176689 1 + T C COAD 3176685 + 3176665 3176705 41 CCACCAACAGGGTGGGGCACCCTCTCCATTTGATAGAAACT CCACCAACAGGGTGGGGCACCCTCCCCATTTGATAGAAACT < 41bp 1 0.00675278564875763 1 0.11449933052063 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PFKP ENSG00000067057 CDS Human protein_coding chr10:3176685 chr10:3176689 synonymous SNV . 0 25 hm5C_associated_SNPs_20571 0 0 1 0 1 PFKP chr10:3176774 5'GT 3176774 Upstream 86bp
chr10 3176689 3176689 1 + T C COAD 3176688 + 3176668 3176708 41 CCAACAGGGTGGGGCACCCTCTCCATTTGATAGAAACTTTG CCAACAGGGTGGGGCACCCTCCCCATTTGATAGAAACTTTG < 41bp 1 0.462380599013996 1 0.737730860710144 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PFKP ENSG00000067057 CDS Human protein_coding chr10:3176688 chr10:3176689 synonymous SNV . 0 22 hm5C_associated_SNPs_20572 0 0 1 0 1 PFKP chr10:3176774 5'GT 3176774 Upstream 86bp
chr15 69003140 69003140 1 + G A COAD 69003148 + 69003128 69003168 41 CTGGAGCTGCACGGGCACAGCCGGCGTGTGGGGCTGGTCGA CTGGAGCTGCACAGGCACAGCCGGCGTGTGGGGCTGGTCGA < 41bp 1 0.517248820752494 1 0.651085734367371 experiment 0.965502358495012 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CORO2B ENSG00000103647 CDS Human protein_coding chr15:69003148 chr15:69003140 nonsynonymous SNV 0.992 4 13 hm5C_associated_SNPs_20573 0 0 0 0 2 CORO2B chr15:69003071 3'AG 69003071 Downstream 70bp
chr15 69003140 69003140 1 + G A COAD 69003148 + 69003128 69003168 41 CTGGAGCTGCACGGGCACAGCCGGCGTGTGGGGCTGGTCGA CTGGAGCTGCACAGGCACAGCCGGCGTGTGGGGCTGGTCGA < 41bp 1 0.517248820752494 1 0.651085734367371 experiment 0.965502358495012 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CORO2B ENSG00000103647 CDS Human protein_coding chr15:69003148 chr15:69003140 nonsynonymous SNV 0.992 4 13 hm5C_associated_SNPs_20573 0 0 0 0 2 CORO2B chr15:69003220 5'GT 69003220 Upstream 81bp
chr22 32889242 32889242 1 + G A COAD 32889253 + 32889233 32889273 41 TCCTGTGGAGGTTTTTATATCTGCGTGATTTTCGAGGTGAT TCCTGTGGAAGTTTTTATATCTGCGTGATTTTCGAGGTGAT < 41bp 1 0.530411392636174 1 0.248434334993362 experiment 0.939177214727651 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32889253 chr22:32889242 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_20574 0 0 1 0 1 FBXO7 chr22:32889268 5'GT 32889268 Upstream 27bp
chr8 68074138 68074138 1 + T C COAD 68074141 + 68074121 68074161 41 GTTGACAGCATCATACGTTCCTTTATTCATGTATGTACTTT GTTGACAGCATCATACGCTCCTTTATTCATGTATGTACTTT < 41bp 1 0.153968555705857 1 0.0297565758228302 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68074141 chr8:68074138 synonymous SNV . 0 18 hm5C_associated_SNPs_20575 0 0 0 0 2 CSPP1 chr8:68074046 3'AG 68074046 Downstream 93bp
chr8 68074138 68074138 1 + T C COAD 68074141 + 68074121 68074161 41 GTTGACAGCATCATACGTTCCTTTATTCATGTATGTACTTT GTTGACAGCATCATACGCTCCTTTATTCATGTATGTACTTT < 41bp 1 0.153968555705857 1 0.0297565758228302 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68074141 chr8:68074138 synonymous SNV . 0 18 hm5C_associated_SNPs_20575 0 0 0 0 2 CSPP1 chr8:68074150 5'GT 68074150 Upstream 13bp
chr10 91465094 91465094 1 + T G COAD 91465083 + 91465063 91465103 41 TTTTAATCAAGAGGGAGTACCTCGACCATCTTATGTTTTTA TTTTAATCAAGAGGGAGTACCTCGACCATCTGATGTTTTTA < 41bp 1 0.744718975266933 1 0.77349990606308 experiment 0.510562049466135 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF20B ENSG00000138182 CDS Human protein_coding chr10:91465083 chr10:91465094 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_20576 0 0 1 0 1 KIF20B chr10:91465051 3'AG 91465051 Downstream 44bp
chr1 33957280 33957280 1 + A G COAD 33957260 + 33957240 33957280 41 ATGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGGCCCCA ATGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGGCCCCG < 41bp 1 0.249532665865082 1 0.079774796962738 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957260 chr1:33957280 synonymous SNV . 0 41 hm5C_associated_SNPs_20580 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 23bp
chr1 33957280 33957280 1 + A G COAD 33957261 + 33957241 33957281 41 TGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGGCCCCAG TGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGGCCCCGG < 41bp 1 0.579791986617449 1 0.369622826576233 experiment 0.840416026765102 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957261 chr1:33957280 synonymous SNV . 0 40 hm5C_associated_SNPs_20581 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 23bp
chr1 33957280 33957280 1 + A G COAD 33957276 + 33957256 33957296 41 GGGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTC GGGGCCCAGGATTGCAGGGGCCCCGGCTCTGTTCCAGAGTC < 41bp 1 0.314585931238859 1 0.166040182113647 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957276 chr1:33957280 synonymous SNV . 0 25 hm5C_associated_SNPs_20582 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 23bp
chr1 33957280 33957280 1 + A G COAD 33957277 + 33957257 33957297 41 GGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCG GGGCCCAGGATTGCAGGGGCCCCGGCTCTGTTCCAGAGTCG < 41bp 1 0.447636382686215 1 0.130373179912567 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957277 chr1:33957280 synonymous SNV . 0 24 hm5C_associated_SNPs_20583 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 23bp
chr1 33957280 33957280 1 + A G COAD 33957278 + 33957258 33957298 41 GGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGT GGCCCAGGATTGCAGGGGCCCCGGCTCTGTTCCAGAGTCGT < 41bp 1 0.181054740486296 1 0.154533177614212 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957278 chr1:33957280 synonymous SNV . 0 23 hm5C_associated_SNPs_20584 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 23bp
chr1 33957280 33957280 1 + A G COAD 33957279 + 33957259 33957299 41 GCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGTA GCCCAGGATTGCAGGGGCCCCGGCTCTGTTCCAGAGTCGTA < 41bp 1 0.463545866462925 1 0.0932438373565674 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957279 chr1:33957280 synonymous SNV . 0 22 hm5C_associated_SNPs_20585 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 23bp
chr7 4002355 4002355 1 + G A COAD 4002345 + 4002325 4002365 41 CCATCTCCATCAGCAGGCTCCAGAATCCTCGATACAAAGTG CCATCTCCATCAGCAGGCTCCAGAATCCTCAATACAAAGTG < 41bp 1 0.220829466704185 1 0.420408248901367 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDK1 ENSG00000146555 CDS Human protein_coding chr7:4002345 chr7:4002355 nonsynonymous SNV 0.582 4 31 hm5C_associated_SNPs_20586 0 0 1 0 1 SDK1 chr7:4002289 3'AG 4002289 Downstream 67bp
chr7 30961752 30961752 1 + C T COAD 30961771 + 30961751 30961791 41 GCGTGCTGGCTACTACCGACCGGAGGCGCCGTGACCTTGGT GTGTGCTGGCTACTACCGACCGGAGGCGCCGTGACCTTGGT < 41bp 1 0.760097934641283 1 0.900869011878967 experiment 0.479804130717435 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AQP1 ENSG00000240583;ENSG00000250424 CDS Human other chr7:30961771 chr7:30961752 synonymous SNV . 0 2 hm5C_associated_SNPs_20587 0 0 1 0 2 AQP1 chr7:30961681 3'AG 30961681 Downstream 72bp
chr7 30961752 30961752 1 + C T COAD 30961771 + 30961751 30961791 41 GCGTGCTGGCTACTACCGACCGGAGGCGCCGTGACCTTGGT GTGTGCTGGCTACTACCGACCGGAGGCGCCGTGACCTTGGT < 41bp 1 0.760097934641283 1 0.900869011878967 experiment 0.479804130717435 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AQP1 ENSG00000240583;ENSG00000250424 CDS Human other chr7:30961771 chr7:30961752 synonymous SNV . 0 2 hm5C_associated_SNPs_20587 0 0 1 0 2 AQP1 chr7:30961845 5'GT 30961845 Upstream 94bp
chr12 46215250 46215250 1 + A T COAD 46215264 + 46215244 46215284 41 GAGAAGACTGATAGAGACTTCGTTAAGGTAAATCATTTTAA GAGAAGTCTGATAGAGACTTCGTTAAGGTAAATCATTTTAA < 41bp 1 0.0750800339388374 1 0.155941158533096 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID2 ENSG00000189079 CDS Human protein_coding chr12:46215264 chr12:46215250 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_20589 0 0 1 0 2 ARID2 chr12:46215203 3'AG 46215203 Downstream 48bp
chr12 46215250 46215250 1 + A T COAD 46215264 + 46215244 46215284 41 GAGAAGACTGATAGAGACTTCGTTAAGGTAAATCATTTTAA GAGAAGTCTGATAGAGACTTCGTTAAGGTAAATCATTTTAA < 41bp 1 0.0750800339388374 1 0.155941158533096 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID2 ENSG00000189079 CDS Human protein_coding chr12:46215264 chr12:46215250 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_20589 0 0 1 0 2 ARID2 chr12:46215270 5'GT 46215270 Upstream 21bp
chr11 65403915 65403915 1 + C A COAD 65403903 + 65403883 65403923 41 CACCAGGCCCTGGCTGGGGGCCGCGGTCCTCCCTGAGTGGC CACCAGGCCCTGGCTGGGGGCCGCGGTCCTCCATGAGTGGC < 41bp 1 0.160017210843158 1 0.355351865291595 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403903 chr11:65403915 nonsynonymous SNV 0.918 0 33 hm5C_associated_SNPs_20591 0 0 1 0 1 PCNX3 chr11:65403862 3'AG 65403862 Downstream 54bp
chr11 65403915 65403915 1 + C A COAD 65403904 + 65403884 65403924 41 ACCAGGCCCTGGCTGGGGGCCGCGGTCCTCCCTGAGTGGCT ACCAGGCCCTGGCTGGGGGCCGCGGTCCTCCATGAGTGGCT < 41bp 1 0.423165680264005 1 0.546309292316437 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403904 chr11:65403915 nonsynonymous SNV 0.918 0 32 hm5C_associated_SNPs_20592 0 0 1 0 1 PCNX3 chr11:65403862 3'AG 65403862 Downstream 54bp
chr15 73996759 73996759 1 + C T COAD 73996758 + 73996738 73996778 41 GCGAATGGCACCTACAGCTGCCTGGTGCGCAACCCCGTGCT GCGAATGGCACCTACAGCTGCTTGGTGCGCAACCCCGTGCT < 41bp 1 0.461191929005095 1 0.219303488731384 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD276 ENSG00000103855 CDS Human protein_coding chr15:73996758 chr15:73996759 synonymous SNV . 0 22 hm5C_associated_SNPs_20593 0 0 1 0 1 CD276 chr15:73996813 5'GT 73996813 Upstream 55bp
chr1 150257012 150257012 1 + G A COAD 150257011 + 150256991 150257031 41 AACGTCATTTTCACAGGGAACGTTACCTAGGAACCTTGCTA AACGTCATTTTCACAGGGAACATTACCTAGGAACCTTGCTA < 41bp 1 0.101920664848111 1 0.0728173851966858 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CIART ENSG00000159208 CDS Human protein_coding chr1:150257011 chr1:150257012 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_20595 0 0 0 0 1 CIART chr1:150257007 3'AG 150257007 Downstream 6bp
chrX 153628249 153628249 1 + T C COAD 153628229 + 153628209 153628249 41 CATATCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCAT CATATCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCAC < 41bp 1 0.387440225909348 1 0.0593574047088623 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628229 chrX:153628249 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_20597 0 0 1 0 1 RPL10 chrX:153628282 5'GT 153628282 Upstream 34bp
chr16 712760 712760 1 + C T COAD 712768 + 712748 712788 41 GGACATGGGCGTCGTGGGCACCACGGCGGGCACGCTGTGGT GGACATGGGCGTTGTGGGCACCACGGCGGGCACGCTGTGGT < 41bp 1 0.211178232945622 1 0.383971214294434 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:712768 chr16:712760 synonymous SNV . 0 13 hm5C_associated_SNPs_20599 0 0 1 0 3 WDR90 chr16:712673 3'AG 712673 Downstream 88bp
chr16 712760 712760 1 + C T COAD 712768 + 712748 712788 41 GGACATGGGCGTCGTGGGCACCACGGCGGGCACGCTGTGGT GGACATGGGCGTTGTGGGCACCACGGCGGGCACGCTGTGGT < 41bp 1 0.211178232945622 1 0.383971214294434 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:712768 chr16:712760 synonymous SNV . 0 13 hm5C_associated_SNPs_20599 0 0 1 0 3 WDR90 chr16:712679 3'AG 712679 Downstream 82bp
chr16 712760 712760 1 + C T COAD 712768 + 712748 712788 41 GGACATGGGCGTCGTGGGCACCACGGCGGGCACGCTGTGGT GGACATGGGCGTTGTGGGCACCACGGCGGGCACGCTGTGGT < 41bp 1 0.211178232945622 1 0.383971214294434 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:712768 chr16:712760 synonymous SNV . 0 13 hm5C_associated_SNPs_20599 0 0 1 0 3 WDR90 chr16:712844 5'GT 712844 Upstream 85bp
chr7 94917903 94917903 1 + A G COAD 94917917 + 94917897 94917937 41 CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA CCGTTCGGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA < 41bp 1 0.559156134698586 1 0.150697857141495 experiment 0.881687730602829 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917917 chr7:94917903 nonsynonymous SNV 0.130 0 7 hm5C_associated_SNPs_20600 0 0 1 0 1 PPP1R9A chr7:94917848 3'AG 94917848 Downstream 56bp
chr7 819716 819716 1 + A G COAD 819711 + 819691 819731 41 TCCTACTATCAGAGCAGTGTCCAGTACCTGTACCGAGAGTT TCCTACTATCAGAGCAGTGTCCAGTGCCTGTACCGAGAGTT < 41bp 1 0.193226215698245 1 0.247268527746201 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:819711 chr7:819716 nonsynonymous SNV 0.359 1 26 hm5C_associated_SNPs_20601 0 0 1 0 1 DNAAF5 chr7:819781 5'GT 819781 Upstream 66bp
chr16 66998553 66998553 1 + T C COAD 66998564 + 66998544 66998584 41 GCAGGGCTGTTCCACAGAGCCATCACACAGAGTGGGGTCAT GCAGGGCTGCTCCACAGAGCCATCACACAGAGTGGGGTCAT < 41bp 1 0.449470602114277 1 0.268282532691956 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:66998564 chr16:66998553 nonsynonymous SNV 0.848 3 10 hm5C_associated_SNPs_20602 0 0 1 0 2 CES3 chr16:66998526 3'AG 66998526 Downstream 28bp
chr16 66998553 66998553 1 + T C COAD 66998564 + 66998544 66998584 41 GCAGGGCTGTTCCACAGAGCCATCACACAGAGTGGGGTCAT GCAGGGCTGCTCCACAGAGCCATCACACAGAGTGGGGTCAT < 41bp 1 0.449470602114277 1 0.268282532691956 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:66998564 chr16:66998553 nonsynonymous SNV 0.848 3 10 hm5C_associated_SNPs_20602 0 0 1 0 2 CES3 chr16:66998630 5'GT 66998630 Upstream 78bp
chr12 94563012 94563012 1 + C A COAD 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATCCATTCCGACCTGACATCCGTTTATGGCACAGTGGTAAT < 41bp 1 0.0543131290638909 1 0.0652722418308258 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94563012 synonymous SNV . 0 33 hm5C_associated_SNPs_20604 0 0 1 0 2 PLXNC1 chr12:94562929 3'AG 94562929 Downstream 84bp
chr12 94563012 94563012 1 + C A COAD 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATCCATTCCGACCTGACATCCGTTTATGGCACAGTGGTAAT < 41bp 1 0.0543131290638909 1 0.0652722418308258 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94563012 synonymous SNV . 0 33 hm5C_associated_SNPs_20604 0 0 1 0 2 PLXNC1 chr12:94563069 5'GT 94563069 Upstream 58bp
chr6 30610597 30610597 1 + C T COAD 30610600 + 30610580 30610620 41 AACAGGGCCCCTCGCCGCGCCACACCTCCAGCCCACCCACC AACAGGGCCCCTCGCCGTGCCACACCTCCAGCCCACCCACC < 41bp 1 0.358394815759453 1 0.285632908344269 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ATAT1 ENSG00000137343 CDS Human protein_coding chr6:30610600 chr6:30610597 synonymous SNV . 0 18 hm5C_associated_SNPs_20605 0 0 0 0 1 ATAT1 chr6:30610545 3'AG 30610545 Downstream 53bp
chr13 114175031 114175031 1 + C T COAD 114175039 + 114175019 114175059 41 CATACAGGCGGGCGCCAGTGCATCTTCTAGGTAAACGCTTT CATACAGGCGGGTGCCAGTGCATCTTCTAGGTAAACGCTTT < 41bp 1 0.211856118400238 1 0.260081648826599 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114175039 chr13:114175031 synonymous SNV . 0 13 hm5C_associated_SNPs_20606 0 0 1 0 1 TMCO3 chr13:114175048 5'GT 114175048 Upstream 18bp
chr19 4960710 4960710 1 + C A COAD 4960706 + 4960686 4960726 41 TTTCGGGCACAGGTGTTCAGCTGCCCTGCCTGCCGCTACGA TTTCGGGCACAGGTGTTCAGCTGCACTGCCTGCCGCTACGA < 41bp 1 0.773252828403505 1 0.120672583580017 experiment 0.453494343192989 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4960706 chr19:4960710 . 0.712 3 25 hm5C_associated_SNPs_20607 0 0 0 0 1 UHRF1 chr19:4960668 3'AG 4960668 Downstream 43bp
chr12 95897881 95897881 1 + C T COAD 95897862 + 95897842 95897882 41 GTGCTGGAATTGATGTTCGTCTGTGTGATGTTGGTGAGGCC GTGCTGGAATTGATGTTCGTCTGTGTGATGTTGGTGAGGTC < 41bp 1 0.465782554050298 1 0.52300900220871 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95897862 chr12:95897881 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_20608 0 0 1 0 1 METAP2 chr12:95897937 5'GT 95897937 Upstream 57bp
chr12 95897881 95897881 1 + C T COAD 95897882 + 95897862 95897902 41 CTGTGTGATGTTGGTGAGGCCATCCAAGAAGTTATGGAGTC CTGTGTGATGTTGGTGAGGTCATCCAAGAAGTTATGGAGTC < 41bp 1 0.258528124967239 1 0.154890418052673 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95897882 chr12:95897881 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_20609 0 0 1 0 1 METAP2 chr12:95897937 5'GT 95897937 Upstream 57bp
chr1 63282307 63282307 1 + A T COAD 63282293 + 63282273 63282313 41 CGGGATGTACAATAGAGGATCACGTAATTGCAGGAAATGTA CGGGATGTACAATAGAGGATCACGTAATTGCAGGTAATGTA < 41bp 1 0.489382418131068 1 0.151971101760864 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATG4C ENSG00000125703 CDS Human protein_coding chr1:63282293 chr1:63282307 synonymous SNV . 0 35 hm5C_associated_SNPs_20611 0 0 1 0 1 ATG4C chr1:63282246 3'AG 63282246 Downstream 62bp
chr9 135117321 135117321 1 + C T COAD 135117309 + 135117289 135117329 41 CTGTGCCAGAACGGAGGCACCTGCCTGCAGAACCAGCGCTG CTGTGCCAGAACGGAGGCACCTGCCTGCAGAATCAGCGCTG < 41bp 1 0.610710730209363 1 0.253417491912842 experiment 0.778578539581275 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NTNG2 ENSG00000196358 CDS Human protein_coding chr9:135117309 chr9:135117321 synonymous SNV . 0 33 hm5C_associated_SNPs_20614 0 0 0 0 1 NTNG2 chr9:135117263 3'AG 135117263 Downstream 59bp
chr17 17041254 17041254 1 + G A COAD 17041237 + 17041217 17041257 41 CTGTCTCTTCCAGAGGAGAGCGCCATGAGTAGCGACCGCAT CTGTCTCTTCCAGAGGAGAGCGCCATGAGTAGCGACCACAT < 41bp 1 0.533823962729351 1 0.696266770362854 experiment 0.932352074541299 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17041237 chr17:17041254 nonsynonymous SNV 0.901 1 38 hm5C_associated_SNPs_20615 0 0 1 0 1 MPRIP chr17:17041230 3'AG 17041230 Downstream 25bp
chr20 30381750 30381750 1 + C A COAD 30381751 + 30381731 30381771 41 AAGAACTGTGGAAATATGCCCTTTCTCGTTTGATTCTCGAG AAGAACTGTGGAAATATGCACTTTCTCGTTTGATTCTCGAG < 41bp 1 0.0306226452726664 1 0.0496317446231842 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30381751 chr20:30381750 nonsynonymous SNV 0.878 3 20 hm5C_associated_SNPs_20616 0 0 1 0 2 TPX2 chr20:30381651 3'AG 30381651 Downstream 100bp
chr20 30381750 30381750 1 + C A COAD 30381751 + 30381731 30381771 41 AAGAACTGTGGAAATATGCCCTTTCTCGTTTGATTCTCGAG AAGAACTGTGGAAATATGCACTTTCTCGTTTGATTCTCGAG < 41bp 1 0.0306226452726664 1 0.0496317446231842 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30381751 chr20:30381750 nonsynonymous SNV 0.878 3 20 hm5C_associated_SNPs_20616 0 0 1 0 2 TPX2 chr20:30381827 5'GT 30381827 Upstream 78bp
chr4 123260555 123260555 1 + G A COAD 123260543 + 123260523 123260563 41 GAGTGGAACAAAGACTTCTGCTAGCAAAACTGGAATACCAG GAGTGGAACAAAGACTTCTGCTAGCAAAACTGAAATACCAG < 41bp 1 0.115952347600657 1 0.410685420036316 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123260543 chr4:123260555 nonsynonymous SNV 0.998 1 33 hm5C_associated_SNPs_20617 0 0 1 0 1 KIAA1109 chr4:123260563 5'GT 123260563 Upstream 9bp
chr5 52177801 52177801 1 + G A COAD 52177818 + 52177798 52177838 41 ATAGTCCAGAGAGGTGGCCGCCAGACTATGACAGCTCTTGG ATAATCCAGAGAGGTGGCCGCCAGACTATGACAGCTCTTGG < 41bp 1 0.342201785072218 1 0.388006120920181 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA1 ENSG00000213949 CDS Human protein_coding chr5:52177818 chr5:52177801 nonsynonymous SNV 0.973 1 4 hm5C_associated_SNPs_20618 0 0 0 2 2 ITGA1 chr5:52177705 3'AG 52177705 Downstream 97bp
chr5 52177801 52177801 1 + G A COAD 52177818 + 52177798 52177838 41 ATAGTCCAGAGAGGTGGCCGCCAGACTATGACAGCTCTTGG ATAATCCAGAGAGGTGGCCGCCAGACTATGACAGCTCTTGG < 41bp 1 0.342201785072218 1 0.388006120920181 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA1 ENSG00000213949 CDS Human protein_coding chr5:52177818 chr5:52177801 nonsynonymous SNV 0.973 1 4 hm5C_associated_SNPs_20618 0 0 0 2 2 ITGA1 chr5:52177853 5'GT 52177853 Upstream 53bp
chr12 121858089 121858089 1 + C T COAD 121858092 + 121858072 121858112 41 ACAGAAGATGATGATGACGACGATGATGAGGATGATGATGA ACAGAAGATGATGATGATGACGATGATGAGGATGATGATGA < 41bp 1 0.452975450740462 1 0.224586695432663 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNF34 ENSG00000170633 CDS Human protein_coding chr12:121858092 chr12:121858089 synonymous SNV . 0 18 hm5C_associated_SNPs_20620 0 0 1 0 2 RNF34 chr12:121858045 3'AG 121858045 Downstream 45bp
chr12 121858089 121858089 1 + C T COAD 121858092 + 121858072 121858112 41 ACAGAAGATGATGATGACGACGATGATGAGGATGATGATGA ACAGAAGATGATGATGATGACGATGATGAGGATGATGATGA < 41bp 1 0.452975450740462 1 0.224586695432663 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNF34 ENSG00000170633 CDS Human protein_coding chr12:121858092 chr12:121858089 synonymous SNV . 0 18 hm5C_associated_SNPs_20620 0 0 1 0 2 RNF34 chr12:121858137 5'GT 121858137 Upstream 49bp
chr19 45495560 45495560 1 + G A COAD 45495555 + 45495535 45495575 41 AAGTCTGTGGCCCACCTTCCCTGGCGCATGCTCACCTACAA AAGTCTGTGGCCCACCTTCCCTGGCACATGCTCACCTACAA < 41bp 1 0.691360883169444 1 0.629426419734955 experiment 0.617278233661112 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45495555 chr19:45495560 nonsynonymous SNV 0.991 4 26 hm5C_associated_SNPs_20621 0 0 1 0 1 CLPTM1 chr19:45495658 5'GT 45495658 Upstream 99bp
chr16 722987 722987 1 + C T COAD 723004 + 722984 723024 41 GCCCGAAGGTGTCGCGGTGTCTGGCCCATCACCGGCCGAGT GCCTGAAGGTGTCGCGGTGTCTGGCCCATCACCGGCCGAGT < 41bp 1 0.732266521089317 1 0.304885864257812 experiment 0.535466957821366 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:723004 chr16:722987 synonymous SNV . 0 4 hm5C_associated_SNPs_20622 0 0 1 0 1 RHOT2 chr16:722928 3'AG 722928 Downstream 60bp
chr6 29797279 29797279 1 + C T COAD 29797286 + 29797266 29797306 41 GGCTTCTACCCTGCGGAGATCATACTGACCTGGCAGCGGGA GGCTTCTACCCTGTGGAGATCATACTGACCTGGCAGCGGGA < 41bp 1 0.151394449683581 1 0.135508835315704 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HLA-G ENSG00000204632 CDS Human protein_coding chr6:29797286 chr6:29797279 nonsynonymous SNV 0.488 1 14 hm5C_associated_SNPs_20625 0 0 0 0 1 HLA-G chr6:29797195 3'AG 29797195 Downstream 85bp
chr19 42848895 42848895 1 + G A COAD 42848907 + 42848887 42848927 41 TTCGTCACGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT TTCGTCACATCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT < 41bp 1 0.247186438634617 1 0.118346184492111 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42848907 chr19:42848895 synonymous SNV . 0 9 hm5C_associated_SNPs_20626 0 0 1 0 2 MEGF8 chr19:42848822 3'AG 42848822 Downstream 74bp
chr19 42848895 42848895 1 + G A COAD 42848907 + 42848887 42848927 41 TTCGTCACGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT TTCGTCACATCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT < 41bp 1 0.247186438634617 1 0.118346184492111 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42848907 chr19:42848895 synonymous SNV . 0 9 hm5C_associated_SNPs_20626 0 0 1 0 2 MEGF8 chr19:42848985 5'GT 42848985 Upstream 91bp
chr20 37161487 37161487 1 + C G COAD 37161476 + 37161456 37161496 41 GACTCCCGATAGTGAGAGACCTGCTCAAGCTCTCTTAAGAG GACTCCCGATAGTGAGAGACCTGCTCAAGCTGTCTTAAGAG < 41bp 1 0.305805371648698 1 0.539831936359406 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37161476 chr20:37161487 nonsynonymous SNV 0.998 3 32 hm5C_associated_SNPs_20627 0 0 1 0 1 RALGAPB chr20:37161502 5'GT 37161502 Upstream 16bp
chr8 98699740 98699740 1 + G C COAD 98699751 + 98699731 98699771 41 GGTTCATTGGATTCAACTATCCCTGGGATAGAAAATACCAT GGTTCATTGCATTCAACTATCCCTGGGATAGAAAATACCAT < 41bp 1 0.209494057161512 1 0.0763855576515198 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98699751 chr8:98699740 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_20628 0 0 1 0 2 MTDH chr8:98699657 3'AG 98699657 Downstream 84bp
chr8 98699740 98699740 1 + G C COAD 98699751 + 98699731 98699771 41 GGTTCATTGGATTCAACTATCCCTGGGATAGAAAATACCAT GGTTCATTGCATTCAACTATCCCTGGGATAGAAAATACCAT < 41bp 1 0.209494057161512 1 0.0763855576515198 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98699751 chr8:98699740 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_20628 0 0 1 0 2 MTDH chr8:98699833 5'GT 98699833 Upstream 94bp
chr11 68204451 68204451 1 + C T COAD 68204450 + 68204430 68204470 41 CCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG CCCCGACTGTATCGACGGCTCTGACGAGCTCATGTGTGGTG < 41bp 1 0.308921000958796 1 0.122800171375275 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204450 chr11:68204451 synonymous SNV . 0 22 hm5C_associated_SNPs_20629 0 0 1 0 2 LRP5 chr11:68204357 3'AG 68204357 Downstream 95bp
chr11 68204451 68204451 1 + C T COAD 68204450 + 68204430 68204470 41 CCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG CCCCGACTGTATCGACGGCTCTGACGAGCTCATGTGTGGTG < 41bp 1 0.308921000958796 1 0.122800171375275 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204450 chr11:68204451 synonymous SNV . 0 22 hm5C_associated_SNPs_20629 0 0 1 0 2 LRP5 chr11:68204467 5'GT 68204467 Upstream 17bp
chr20 3802796 3802796 1 + G T COAD 3802800 + 3802780 3802820 41 CTCATTCACACCTTGAGGGCCCCGAATACTGAGGACACGGG CTCATTCACACCTTGATGGCCCCGAATACTGAGGACACGGG < 41bp 1 0.472182722324264 1 0.0345503091812134 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5S1 ENSG00000125843 CDS Human protein_coding chr20:3802800 chr20:3802796 nonsynonymous SNV 0.637 1 17 hm5C_associated_SNPs_20632 0 0 1 0 1 AP5S1 chr20:3802749 3'AG 3802749 Downstream 48bp
chr9 131247124 131247124 1 + G A COAD 131247109 + 131247089 131247129 41 CCATCCGAGCCCAGAAGGAGCGAGCCGAGAAGAGCGAGGAG CCATCCGAGCCCAGAAGGAGCGAGCCGAGAAGAGCAAGGAG < 41bp 1 0.414530617949719 1 0.458017706871033 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ODF2 ENSG00000136811 CDS Human protein_coding chr9:131247109 chr9:131247124 nonsynonymous SNV 0.953 4 36 hm5C_associated_SNPs_20633 0 0 1 0 1 ODF2 chr9:131247165 5'GT 131247165 Upstream 42bp
chr16 12450129 12450129 1 + G A COAD 12450135 + 12450115 12450155 41 GCTCATCGATCTCCGGGGACCGGTGAGTGTTTCCCCAACCC GCTCATCGATCTCCAGGGACCGGTGAGTGTTTCCCCAACCC < 41bp 1 0.378749185193781 1 0.469673842191696 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12450135 chr16:12450129 nonsynonymous SNV 0.870 2 15 hm5C_associated_SNPs_20634 0 0 1 0 1 SNX29 chr16:12450136 5'GT 12450136 Upstream 8bp
chr5 6652014 6652014 1 + C T COAD 6652008 + 6651988 6652028 41 AAAGCCTATGCCACTGTTGGCGTGTACAATGGCGATTATGT AAAGCCTATGCCACTGTTGGCGTGTATAATGGCGATTATGT < 41bp 1 0.170654673967252 1 0.2676802277565 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6652008 chr5:6652014 nonsynonymous SNV 0.000 0 27 hm5C_associated_SNPs_20636 0 0 0 0 1 SRD5A1 chr5:6651955 3'AG 6651955 Downstream 60bp
chr11 4091345 4091345 1 + C A COAD 4091338 + 4091318 4091358 41 GGCTGCTGGTTTGCCTATATCCAGAACCGTTACTCCAAGGA GGCTGCTGGTTTGCCTATATCCAGAACAGTTACTCCAAGGA < 41bp 1 0.666280368419584 1 0.710178852081299 experiment 0.667439263160832 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STIM1 ENSG00000167323 CDS Human protein_coding chr11:4091338 chr11:4091345 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_20637 0 0 1 0 2 STIM1 chr11:4091256 3'AG 4091256 Downstream 90bp
chr11 4091345 4091345 1 + C A COAD 4091338 + 4091318 4091358 41 GGCTGCTGGTTTGCCTATATCCAGAACCGTTACTCCAAGGA GGCTGCTGGTTTGCCTATATCCAGAACAGTTACTCCAAGGA < 41bp 1 0.666280368419584 1 0.710178852081299 experiment 0.667439263160832 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STIM1 ENSG00000167323 CDS Human protein_coding chr11:4091338 chr11:4091345 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_20637 0 0 1 0 2 STIM1 chr11:4091433 5'GT 4091433 Upstream 89bp
chr10 43289389 43289389 1 + G A COAD 43289408 + 43289388 43289428 41 CGCTGTTTTCTGATTCCAAGCCACTTGGGTCAGAGGATATA CACTGTTTTCTGATTCCAAGCCACTTGGGTCAGAGGATATA < 41bp 1 0.103371550777373 1 0.0493552684783936 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMS1 ENSG00000165733 CDS Human protein_coding chr10:43289408 chr10:43289389 synonymous SNV . 0 2 hm5C_associated_SNPs_20638 0 0 1 0 1 BMS1 chr10:43289300 3'AG 43289300 Downstream 90bp
chr10 43285945 43285945 1 + A G COAD 43285946 + 43285926 43285966 41 ATTAAAACACAGGTTCTGGACGGAAGTTTACCCGGTACGAA ATTAAAACACAGGTTCTGGGCGGAAGTTTACCCGGTACGAA < 41bp 1 0.67620881984564 1 0.456951797008514 experiment 0.647582360308721 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BMS1 ENSG00000165733 CDS Human protein_coding chr10:43285946 chr10:43285945 nonsynonymous SNV 0.978 2 20 hm5C_associated_SNPs_20639 0 0 1 0 1 BMS1 chr10:43285959 5'GT 43285959 Upstream 15bp
chr17 40936555 40936555 1 + C T COAD 40936572 + 40936552 40936592 41 CTCCGAGTGCCAGAATGCCGCGCAAATCTACCGCAAGGTCA CTCTGAGTGCCAGAATGCCGCGCAAATCTACCGCAAGGTCA < 41bp 1 0.617160296653893 1 0.246440708637238 experiment 0.765679406692215 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WNK4 ENSG00000126562 CDS Human protein_coding chr17:40936572 chr17:40936555 synonymous SNV . 0 4 hm5C_associated_SNPs_20641 0 0 1 0 1 WNK4 chr17:40936597 5'GT 40936597 Upstream 43bp
chr7 150704217 150704217 1 + G T COAD 150704202 + 150704182 150704222 41 CACCCCAGGTTCTGTGTGTTCGGGCTCGGCTCCCGGGCATA CACCCCAGGTTCTGTGTGTTCGGGCTCGGCTCCCGTGCATA < 41bp 1 0.746370787471314 1 0.922142744064331 experiment 0.507258425057372 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control NOS3 ENSG00000164867 CDS Human protein_coding chr7:150704202 chr7:150704217 synonymous SNV . 0 36 hm5C_associated_SNPs_20642 0 0 0 0 1 NOS3 chr7:150704190 3'AG 150704190 Downstream 28bp
chr19 35504557 35504557 1 + C T COAD 35504562 + 35504542 35504582 41 CGTGGCCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGA CGTGGCCATGTCACGTCCAACCTTTCCCGAGCCAGCAGCGA < 41bp 1 0.0226448082254931 1 0.0727641582489014 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504562 chr19:35504557 nonsynonymous SNV 0.552 3 16 hm5C_associated_SNPs_20643 0 0 1 0 1 GRAMD1A chr19:35504595 5'GT 35504595 Upstream 39bp
chr19 35504557 35504557 1 + C T COAD 35504567 + 35504547 35504587 41 CCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGACGCAG CCATGTCACGTCCAACCTTTCCCGAGCCAGCAGCGACGCAG < 41bp 1 0.770608970307606 1 0.157795161008835 experiment 0.458782059384789 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504567 chr19:35504557 nonsynonymous SNV 0.552 3 11 hm5C_associated_SNPs_20644 0 0 1 0 1 GRAMD1A chr19:35504595 5'GT 35504595 Upstream 39bp
chr1 155582059 155582059 1 + G A COAD 155582039 + 155582019 155582059 41 GCGCGAAGGCGGCAGAGCTGCTACAAGATGAATATTCAGGG GCGCGAAGGCGGCAGAGCTGCTACAAGATGAATATTCAGGA < 41bp 1 0.781451685468288 1 0.398893088102341 experiment 0.437096629063424 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582039 chr1:155582059 synonymous SNV . 0 41 hm5C_associated_SNPs_20645 0 0 1 0 2 MSTO1 chr1:155581973 3'AG 155581973 Downstream 87bp
chr1 155582059 155582059 1 + G A COAD 155582039 + 155582019 155582059 41 GCGCGAAGGCGGCAGAGCTGCTACAAGATGAATATTCAGGG GCGCGAAGGCGGCAGAGCTGCTACAAGATGAATATTCAGGA < 41bp 1 0.781451685468288 1 0.398893088102341 experiment 0.437096629063424 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582039 chr1:155582059 synonymous SNV . 0 41 hm5C_associated_SNPs_20645 0 0 1 0 2 MSTO1 chr1:155582107 5'GT 155582107 Upstream 49bp
chr16 67578985 67578985 1 + G A COAD 67578992 + 67578972 67579012 41 CAGTATGGTGCCCGCCTCTCCCTGCGCCAGCCAGGCTTGGC CAGTATGGTGCCCACCTCTCCCTGCGCCAGCCAGGCTTGGC < 41bp 1 0.0835954505176507 1 0.0959350764751434 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578992 chr16:67578985 nonsynonymous SNV 0.994 2 14 hm5C_associated_SNPs_20646 0 0 1 0 1 RIPOR1 chr16:67579020 5'GT 67579020 Upstream 36bp
chr12 57552324 57552324 1 + C T COAD 57552333 + 57552313 57552353 41 CTGGACTTCCACGCTGAGACCGGCTTCATCTACTTTGCCGA CTGGACTTCCATGCTGAGACCGGCTTCATCTACTTTGCCGA < 41bp 1 0.107909987626193 1 0.336542129516602 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57552333 chr12:57552324 synonymous SNV . 0 12 hm5C_associated_SNPs_20647 0 0 0 0 1 LRP1 chr12:57552421 5'GT 57552421 Upstream 98bp
chr1 162745477 162745477 1 + G A COAD 162745469 + 162745449 162745489 41 TTTCTTAAGGAGATAAAGATCATGTCTCGGCTCAAGGACCC TTTCTTAAGGAGATAAAGATCATGTCTCAGCTCAAGGACCC < 41bp 1 0.272199060982949 1 0.0844174325466156 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162745469 chr1:162745477 nonsynonymous SNV 0.987 5 29 hm5C_associated_SNPs_20649 0 0 0 0 1 DDR2 chr1:162745442 3'AG 162745442 Downstream 36bp
chr4 110581398 110581398 1 + T C COAD 110581382 + 110581362 110581402 41 ATTTATAGACATGGCCTTCCCTTGGTAACACTTACCTTGCC ATTTATAGACATGGCCTTCCCTTGGTAACACTTACCCTGCC < 41bp 1 0.67912379193408 1 0.709373593330383 experiment 0.64175241613184 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCUB ENSG00000005059 CDS Human protein_coding chr4:110581382 chr4:110581398 synonymous SNV . 0 37 hm5C_associated_SNPs_20650 0 0 1 0 1 MCUB chr4:110581351 3'AG 110581351 Downstream 48bp
chr6 161519333 161519333 1 + C T COAD 161519314 + 161519294 161519334 41 TTTCTTCTTGTCTTAGCACTCGGAGCATGCCTTCCGACGCG TTTCTTCTTGTCTTAGCACTCGGAGCATGCCTTCCGACGTG < 41bp 1 0.748452164464571 1 0.967903256416321 experiment 0.503095671070857 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161519314 chr6:161519333 nonsynonymous SNV 0.027 0 40 hm5C_associated_SNPs_20654 0 0 1 0 1 MAP3K4 chr6:161519310 3'AG 161519310 Downstream 24bp
chr9 96411465 96411465 1 + C T COAD 96411460 + 96411440 96411480 41 GCACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCGAG GCACCAACCGCAAGCGGGTCCTCAATGTCACCAACCTCGAG < 41bp 1 0.577233316739802 1 0.632687211036682 experiment 0.845533366520395 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96411460 chr9:96411465 synonymous SNV . 0 26 hm5C_associated_SNPs_20655 0 0 1 0 1 PHF2 chr9:96411494 5'GT 96411494 Upstream 30bp
chr18 641425 641425 1 + C T COAD 641423 + 641403 641443 41 TGGCCAGATTCTCCAGATGACCCGGAAGCACTTGGAGGACA TGGCCAGATTCTCCAGATGACCTGGAAGCACTTGGAGGACA < 41bp 1 0.387359210423341 1 0.0546078979969025 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CLUL1 ENSG00000079101 CDS Human protein_coding chr18:641423 chr18:641425 nonsynonymous SNV 0.682 3 23 hm5C_associated_SNPs_20656 0 0 0 0 1 CLUL1 chr18:641327 3'AG 641327 Downstream 99bp
chrX 107909786 107909786 1 + A T COAD 107909782 + 107909762 107909802 41 GCGAAAAAGGCAAACCCGGTCAAGATGGTATTCCTGGACCA GCGAAAAAGGCAAACCCGGTCAAGTTGGTATTCCTGGACCA < 41bp 1 0.461584217354181 1 0.45640230178833 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107909782 chrX:107909786 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_20658 0 0 1 0 2 COL4A5 chrX:107909726 3'AG 107909726 Downstream 61bp
chrX 107909786 107909786 1 + A T COAD 107909782 + 107909762 107909802 41 GCGAAAAAGGCAAACCCGGTCAAGATGGTATTCCTGGACCA GCGAAAAAGGCAAACCCGGTCAAGTTGGTATTCCTGGACCA < 41bp 1 0.461584217354181 1 0.45640230178833 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107909782 chrX:107909786 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_20658 0 0 1 0 2 COL4A5 chrX:107909824 5'GT 107909824 Upstream 39bp
chr12 54675966 54675966 1 + T G COAD 54675973 + 54675953 54675993 41 ACCTAAGAGATTATTTTGAACAGTATGGAAAAATTGAAGTG ACCTAAGAGATTAGTTTGAACAGTATGGAAAAATTGAAGTG < 41bp 1 0.6187379450155 1 0.362755805253983 experiment 0.762524109968999 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675973 chr12:54675966 stopgain 1.000 1 14 hm5C_associated_SNPs_20659 0 0 0 3 1 HNRNPA1 chr12:54675874 3'AG 54675874 Downstream 93bp
chr19 10789839 10789839 1 + G A COAD 10789854 + 10789834 10789874 41 CTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG CTCGCATGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG < 41bp 1 0.0843414990971623 1 0.0509595274925232 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789854 chr19:10789839 nonsynonymous SNV 0.863 4 6 hm5C_associated_SNPs_20660 0 0 1 0 2 ILF3 chr19:10789773 3'AG 10789773 Downstream 67bp
chr19 10789839 10789839 1 + G A COAD 10789854 + 10789834 10789874 41 CTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG CTCGCATGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG < 41bp 1 0.0843414990971623 1 0.0509595274925232 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789854 chr19:10789839 nonsynonymous SNV 0.863 4 6 hm5C_associated_SNPs_20660 0 0 1 0 2 ILF3 chr19:10789868 5'GT 10789868 Upstream 30bp
chr19 10789839 10789839 1 + G A COAD 10789855 + 10789835 10789875 41 TCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC TCGCATGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC < 41bp 1 0.0350541083248323 1 0.104661911725998 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789855 chr19:10789839 nonsynonymous SNV 0.863 4 5 hm5C_associated_SNPs_20661 0 0 1 0 2 ILF3 chr19:10789773 3'AG 10789773 Downstream 67bp
chr19 10789839 10789839 1 + G A COAD 10789855 + 10789835 10789875 41 TCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC TCGCATGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC < 41bp 1 0.0350541083248323 1 0.104661911725998 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789855 chr19:10789839 nonsynonymous SNV 0.863 4 5 hm5C_associated_SNPs_20661 0 0 1 0 2 ILF3 chr19:10789868 5'GT 10789868 Upstream 30bp
chr16 2286845 2286845 1 + G A COAD 2286855 + 2286835 2286875 41 TCTGCTGGCCGCACTCTGGGCGCTGGAAGCCGCCGGGACCG TCTGCTGGCCACACTCTGGGCGCTGGAAGCCGCCGGGACCG < 41bp 1 0.621562157626847 1 0.379062086343765 experiment 0.756875684746307 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNASE1L2 ENSG00000167968 CDS Human lincRNA chr16:2286855 chr16:2286845 nonsynonymous SNV 0.001 0 11 hm5C_associated_SNPs_20662 0 0 0 0 2 DNASE1L2 chr16:2286779 3'AG 2286779 Downstream 67bp
chr16 2286845 2286845 1 + G A COAD 2286855 + 2286835 2286875 41 TCTGCTGGCCGCACTCTGGGCGCTGGAAGCCGCCGGGACCG TCTGCTGGCCACACTCTGGGCGCTGGAAGCCGCCGGGACCG < 41bp 1 0.621562157626847 1 0.379062086343765 experiment 0.756875684746307 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNASE1L2 ENSG00000167968 CDS Human lincRNA chr16:2286855 chr16:2286845 nonsynonymous SNV 0.001 0 11 hm5C_associated_SNPs_20662 0 0 0 0 2 DNASE1L2 chr16:2286802 3'AG 2286802 Downstream 44bp
chr5 148808540 148808540 1 + C A COAD 148808551 + 148808531 148808571 41 GTTGGGAGTCTGAGATGAAGCACTGTAGCTCAGGAAGAGAG GTTGGGAGTATGAGATGAAGCACTGTAGCTCAGGAAGAGAG < 41bp 1 0.507909577009986 1 0.171170264482498 experiment 0.984180845980029 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CARMN;MIR143 ENSG00000208035 ncRNA_exonic Human other chr5:148808551 chr5:148808540 . . 0 10 hm5C_associated_SNPs_20663 0 0 1 0 2 CARMN chr5:148808446 3'AG 148808446 Downstream 95bp
chr5 148808540 148808540 1 + C A COAD 148808551 + 148808531 148808571 41 GTTGGGAGTCTGAGATGAAGCACTGTAGCTCAGGAAGAGAG GTTGGGAGTATGAGATGAAGCACTGTAGCTCAGGAAGAGAG < 41bp 1 0.507909577009986 1 0.171170264482498 experiment 0.984180845980029 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CARMN;MIR143 ENSG00000208035 ncRNA_exonic Human other chr5:148808551 chr5:148808540 . . 0 10 hm5C_associated_SNPs_20663 0 0 1 0 2 CARMN chr5:148808602 5'GT 148808602 Upstream 63bp
chr5 148808540 148808540 1 + C A COAD 148808553 + 148808533 148808573 41 TGGGAGTCTGAGATGAAGCACTGTAGCTCAGGAAGAGAGAA TGGGAGTATGAGATGAAGCACTGTAGCTCAGGAAGAGAGAA < 41bp 1 0.413306288133534 1 0.0541495978832245 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CARMN;MIR143 ENSG00000208035 ncRNA_exonic Human other chr5:148808553 chr5:148808540 . . 0 8 hm5C_associated_SNPs_20664 0 0 1 0 2 CARMN chr5:148808446 3'AG 148808446 Downstream 95bp
chr5 148808540 148808540 1 + C A COAD 148808553 + 148808533 148808573 41 TGGGAGTCTGAGATGAAGCACTGTAGCTCAGGAAGAGAGAA TGGGAGTATGAGATGAAGCACTGTAGCTCAGGAAGAGAGAA < 41bp 1 0.413306288133534 1 0.0541495978832245 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CARMN;MIR143 ENSG00000208035 ncRNA_exonic Human other chr5:148808553 chr5:148808540 . . 0 8 hm5C_associated_SNPs_20664 0 0 1 0 2 CARMN chr5:148808602 5'GT 148808602 Upstream 63bp
chr5 148808540 148808540 1 + C A COAD 148808559 + 148808539 148808579 41 TCTGAGATGAAGCACTGTAGCTCAGGAAGAGAGAAGTTGTT TATGAGATGAAGCACTGTAGCTCAGGAAGAGAGAAGTTGTT < 41bp 1 0.576720572050364 1 0.0562585890293121 experiment 0.846558855899272 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CARMN;MIR143 ENSG00000208035 ncRNA_exonic Human other chr5:148808559 chr5:148808540 . . 0 2 hm5C_associated_SNPs_20665 0 0 1 0 2 CARMN chr5:148808446 3'AG 148808446 Downstream 95bp
chr5 148808540 148808540 1 + C A COAD 148808559 + 148808539 148808579 41 TCTGAGATGAAGCACTGTAGCTCAGGAAGAGAGAAGTTGTT TATGAGATGAAGCACTGTAGCTCAGGAAGAGAGAAGTTGTT < 41bp 1 0.576720572050364 1 0.0562585890293121 experiment 0.846558855899272 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CARMN;MIR143 ENSG00000208035 ncRNA_exonic Human other chr5:148808559 chr5:148808540 . . 0 2 hm5C_associated_SNPs_20665 0 0 1 0 2 CARMN chr5:148808602 5'GT 148808602 Upstream 63bp
chr11 86947708 86947708 1 + T C COAD 86947706 + 86947686 86947726 41 TTGTTTTGCATCACAGCTGCCATGTACATGTTCTTTTTCAG TTGTTTTGCATCACAGCTGCCACGTACATGTTCTTTTTCAG < 41bp 1 0.148173443405363 1 0.0432851314544678 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM135 ENSG00000166575 CDS Human protein_coding chr11:86947706 chr11:86947708 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_20666 0 0 1 0 2 TMEM135 chr11:86947680 3'AG 86947680 Downstream 29bp
chr11 86947708 86947708 1 + T C COAD 86947706 + 86947686 86947726 41 TTGTTTTGCATCACAGCTGCCATGTACATGTTCTTTTTCAG TTGTTTTGCATCACAGCTGCCACGTACATGTTCTTTTTCAG < 41bp 1 0.148173443405363 1 0.0432851314544678 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM135 ENSG00000166575 CDS Human protein_coding chr11:86947706 chr11:86947708 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_20666 0 0 1 0 2 TMEM135 chr11:86947726 5'GT 86947726 Upstream 19bp
chr3 31658470 31658470 1 + C G COAD 31658471 + 31658451 31658491 41 TCTTGCAGTATCTGAGAGACCGATTAACAAAACAAGAGTTC TCTTGCAGTATCTGAGAGAGCGATTAACAAAACAAGAGTTC < 41bp 1 0.283059465267731 1 0.238721609115601 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STT3B ENSG00000163527 CDS Human protein_coding chr3:31658471 chr3:31658470 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_20667 0 0 1 0 2 STT3B chr3:31658421 3'AG 31658421 Downstream 50bp
chr3 31658470 31658470 1 + C G COAD 31658471 + 31658451 31658491 41 TCTTGCAGTATCTGAGAGACCGATTAACAAAACAAGAGTTC TCTTGCAGTATCTGAGAGAGCGATTAACAAAACAAGAGTTC < 41bp 1 0.283059465267731 1 0.238721609115601 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STT3B ENSG00000163527 CDS Human protein_coding chr3:31658471 chr3:31658470 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_20667 0 0 1 0 2 STT3B chr3:31658567 5'GT 31658567 Upstream 98bp
chr12 57588466 57588466 1 + G T COAD 57588474 + 57588454 57588494 41 TGAACATGGCGAGGACGAGACCCACTGCAGTGAGTGACCAC TGAACATGGCGATGACGAGACCCACTGCAGTGAGTGACCAC < 41bp 1 0.0306553093828467 1 0.0389719903469086 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57588474 chr12:57588466 nonsynonymous SNV 0.997 1 13 hm5C_associated_SNPs_20672 0 0 1 0 1 LRP1 chr12:57588482 5'GT 57588482 Upstream 17bp
chr17 48153045 48153045 1 + C T COAD 48153033 + 48153013 48153053 41 CGCTTTGCCGGCAGTGAGTCCGCTGTCTTCCACGGCTTCTT CGCTTTGCCGGCAGTGAGTCCGCTGTCTTCCATGGCTTCTT < 41bp 1 0.334515405757669 1 0.259822189807892 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48153033 chr17:48153045 synonymous SNV . 0 33 hm5C_associated_SNPs_20673 0 0 0 0 2 ITGA3 chr17:48152963 3'AG 48152963 Downstream 83bp
chr17 48153045 48153045 1 + C T COAD 48153033 + 48153013 48153053 41 CGCTTTGCCGGCAGTGAGTCCGCTGTCTTCCACGGCTTCTT CGCTTTGCCGGCAGTGAGTCCGCTGTCTTCCATGGCTTCTT < 41bp 1 0.334515405757669 1 0.259822189807892 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48153033 chr17:48153045 synonymous SNV . 0 33 hm5C_associated_SNPs_20673 0 0 0 0 2 ITGA3 chr17:48153099 5'GT 48153099 Upstream 55bp
chr8 28608183 28608183 1 + C T COAD 28608178 + 28608158 28608198 41 TCTCTCCCGTTTCCAGGTGACCTCACGGTGGACATTCCGAT TCTCTCCCGTTTCCAGGTGACCTCATGGTGGACATTCCGAT < 41bp 1 0.109640470177221 1 0.03302001953125 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EXTL3 ENSG00000012232 CDS Human protein_coding chr8:28608178 chr8:28608183 nonsynonymous SNV 0.310 4 26 hm5C_associated_SNPs_20674 0 0 1 0 1 EXTL3 chr8:28608174 3'AG 28608174 Downstream 10bp
chr17 77755566 77755566 1 + C T COAD 77755547 + 77755527 77755567 41 GAGGCAAGAGGCCGAGAGGCCGGCCAAGGAAGCTCACTGCC GAGGCAAGAGGCCGAGAGGCCGGCCAAGGAAGCTCACTGTC < 41bp 1 0.462391380393632 1 0.382382929325104 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755547 chr17:77755566 nonsynonymous SNV 0.003 0 40 hm5C_associated_SNPs_20675 0 0 1 0 2 CBX2 chr17:77755495 3'AG 77755495 Downstream 72bp
chr17 77755566 77755566 1 + C T COAD 77755547 + 77755527 77755567 41 GAGGCAAGAGGCCGAGAGGCCGGCCAAGGAAGCTCACTGCC GAGGCAAGAGGCCGAGAGGCCGGCCAAGGAAGCTCACTGTC < 41bp 1 0.462391380393632 1 0.382382929325104 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755547 chr17:77755566 nonsynonymous SNV 0.003 0 40 hm5C_associated_SNPs_20675 0 0 1 0 2 CBX2 chr17:77755600 5'GT 77755600 Upstream 35bp
chr11 66238807 66238807 1 + G A COAD 66238806 + 66238786 66238826 41 GCCAACGGGGTGAAGCCAGACGTCATGCACCACATCTCCAC GCCAACGGGGTGAAGCCAGACATCATGCACCACATCTCCAC < 41bp 1 0.708401090526363 1 0.0953847467899323 experiment 0.583197818947275 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PELI3 ENSG00000174516 CDS Human protein_coding chr11:66238806 chr11:66238807 nonsynonymous SNV 0.964 1 22 hm5C_associated_SNPs_20676 0 0 0 0 1 PELI3 chr11:66238713 3'AG 66238713 Downstream 95bp
chr16 89970553 89970553 1 + G C COAD 89970558 + 89970538 89970578 41 TGCTCGAGTCTTGCAGTGTGCGGCCCGACGCCAGCGTTTCC TGCTCGAGTCTTGCACTGTGCGGCCCGACGCCAGCGTTTCC < 41bp 1 0.428830337701615 1 0.334426581859589 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89970558 chr16:89970553 nonsynonymous SNV 0.105 1 16 hm5C_associated_SNPs_20677 0 0 1 0 2 TCF25 chr16:89970526 3'AG 89970526 Downstream 28bp
chr16 89970553 89970553 1 + G C COAD 89970558 + 89970538 89970578 41 TGCTCGAGTCTTGCAGTGTGCGGCCCGACGCCAGCGTTTCC TGCTCGAGTCTTGCACTGTGCGGCCCGACGCCAGCGTTTCC < 41bp 1 0.428830337701615 1 0.334426581859589 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89970558 chr16:89970553 nonsynonymous SNV 0.105 1 16 hm5C_associated_SNPs_20677 0 0 1 0 2 TCF25 chr16:89970613 5'GT 89970613 Upstream 61bp
chr5 149406394 149406394 1 + G A COAD 149406376 + 149406356 149406396 41 CATGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAG CATGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCAAG < 41bp 1 0.458810279946377 1 0.151879549026489 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406376 chr5:149406394 nonsynonymous SNV 0.989 1 39 hm5C_associated_SNPs_20678 0 0 1 0 1 HMGXB3 chr5:149406444 5'GT 149406444 Upstream 51bp
chr5 149406394 149406394 1 + G A COAD 149406377 + 149406357 149406397 41 ATGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGG ATGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCAAGG < 41bp 1 0.160782136043345 1 0.156894147396088 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406377 chr5:149406394 nonsynonymous SNV 0.989 1 38 hm5C_associated_SNPs_20679 0 0 1 0 1 HMGXB3 chr5:149406444 5'GT 149406444 Upstream 51bp
chr5 149406394 149406394 1 + G A COAD 149406378 + 149406358 149406398 41 TGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGGC TGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCAAGGC < 41bp 1 0.120750828489363 1 0.220010548830032 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406378 chr5:149406394 nonsynonymous SNV 0.989 1 37 hm5C_associated_SNPs_20680 0 0 1 0 1 HMGXB3 chr5:149406444 5'GT 149406444 Upstream 51bp
chr5 149406394 149406394 1 + G A COAD 149406379 + 149406359 149406399 41 GAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGGCA GAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCAAGGCA < 41bp 1 0.127474065562194 1 0.47307762503624 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406379 chr5:149406394 nonsynonymous SNV 0.989 1 36 hm5C_associated_SNPs_20681 0 0 1 0 1 HMGXB3 chr5:149406444 5'GT 149406444 Upstream 51bp
chr5 149406394 149406394 1 + G A COAD 149406393 + 149406373 149406413 41 CAGCCCCAGTTAACGTGGGGCGAGGCAGCAGCATGGGACTG CAGCCCCAGTTAACGTGGGGCAAGGCAGCAGCATGGGACTG < 41bp 1 0.36386616153645 1 0.485583573579788 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406393 chr5:149406394 nonsynonymous SNV 0.989 1 22 hm5C_associated_SNPs_20682 0 0 1 0 1 HMGXB3 chr5:149406444 5'GT 149406444 Upstream 51bp
chr14 105927197 105927197 1 + C T COAD 105927186 + 105927166 105927206 41 TGCCGCAGGGCGGGCCCGTGCTCTGCAGGGACGAGATGGAG TGCCGCAGGGCGGGCCCGTGCTCTGCAGGGATGAGATGGAG < 41bp 1 0.508106075290282 1 0.430985391139984 experiment 0.983787849419436 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105927186 chr14:105927197 synonymous SNV . 0 32 hm5C_associated_SNPs_20684 0 0 1 0 1 MTA1 chr14:105927102 3'AG 105927102 Downstream 96bp
chr19 46519603 46519603 1 + C T COAD 46519595 + 46519575 46519615 41 GGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTTTGTGAA GGTGGTCGCGCGCTCCGCTTCGACCCCATGGCCTTTGTGAA < 41bp 1 0.248994196320307 1 0.378118008375168 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46519595 chr19:46519603 nonsynonymous SNV 0.999 3 29 hm5C_associated_SNPs_20686 0 0 0 0 2 CCDC61 chr19:46519576 3'AG 46519576 Downstream 28bp
chr19 46519603 46519603 1 + C T COAD 46519595 + 46519575 46519615 41 GGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTTTGTGAA GGTGGTCGCGCGCTCCGCTTCGACCCCATGGCCTTTGTGAA < 41bp 1 0.248994196320307 1 0.378118008375168 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46519595 chr19:46519603 nonsynonymous SNV 0.999 3 29 hm5C_associated_SNPs_20686 0 0 0 0 2 CCDC61 chr19:46519651 5'GT 46519651 Upstream 49bp
chr6 148808782 148808782 1 + G A COAD 148808768 + 148808748 148808788 41 AGCTCAAGGAATACGAGGCCCAGCACCGGCAGTCGGCTGCC AGCTCAAGGAATACGAGGCCCAGCACCGGCAGTCAGCTGCC < 41bp 1 0.586154188957405 1 0.432416528463364 experiment 0.827691622085189 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SASH1 ENSG00000111961 CDS Human protein_coding chr6:148808768 chr6:148808782 synonymous SNV . 0 35 hm5C_associated_SNPs_20688 0 0 0 0 2 SASH1 chr6:148808750 3'AG 148808750 Downstream 33bp
chr6 148808782 148808782 1 + G A COAD 148808768 + 148808748 148808788 41 AGCTCAAGGAATACGAGGCCCAGCACCGGCAGTCGGCTGCC AGCTCAAGGAATACGAGGCCCAGCACCGGCAGTCAGCTGCC < 41bp 1 0.586154188957405 1 0.432416528463364 experiment 0.827691622085189 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SASH1 ENSG00000111961 CDS Human protein_coding chr6:148808768 chr6:148808782 synonymous SNV . 0 35 hm5C_associated_SNPs_20688 0 0 0 0 2 SASH1 chr6:148808851 5'GT 148808851 Upstream 70bp
chr1 162469795 162469795 1 + C T COAD 162469797 + 162469777 162469817 41 TCTCCAAATGTGCCATCACGCTGTCTGTTGCTTGAACTCCT TCTCCAAATGTGCCATCATGCTGTCTGTTGCTTGAACTCCT < 41bp 1 0.312111334838514 1 0.506470680236816 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162469797 chr1:162469795 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_20690 0 0 1 0 1 UHMK1 chr1:162469745 3'AG 162469745 Downstream 51bp
chr6 30856994 30856994 1 + C T COAD 30857005 + 30856985 30857025 41 GAGCAGTGACGGGGATGGGGCCTGGTGCCCCGCAGGGTCGG GAGCAGTGATGGGGATGGGGCCTGGTGCCCCGCAGGGTCGG < 41bp 1 0.294694893032719 1 0.389248043298721 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDR1 ENSG00000204580 CDS Human protein_coding chr6:30857005 chr6:30856994 synonymous SNV . 0 10 hm5C_associated_SNPs_20693 0 0 1 0 1 DDR1 chr6:30856979 3'AG 30856979 Downstream 16bp
chr19 42814474 42814474 1 + G T COAD 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATATCCCTGATCAAGTCCCAGAGCA < 41bp 1 0.226563105801351 1 0.179033696651459 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814474 nonsynonymous SNV 0.000 0 20 hm5C_associated_SNPs_20694 0 0 0 3 1 PRR19 chr19:42814423 3'AG 42814423 Downstream 52bp
chr17 41585012 41585012 1 + G A COAD 41585007 + 41584987 41585027 41 GATCATCATGTTGGACGAGGCACATGAGAGGACAATTCACA GATCATCATGTTGGACGAGGCACATAAGAGGACAATTCACA < 41bp 1 0.22737445941745 1 0.118501275777817 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41585007 chr17:41585012 nonsynonymous SNV 0.726 4 26 hm5C_associated_SNPs_20695 0 0 1 0 1 DHX8 chr17:41585056 5'GT 41585056 Upstream 45bp
chr17 79425713 79425713 1 + C T COAD 79425696 + 79425676 79425716 41 GGCCACACGCAACGCCAAGGCCATCCTGGGGAAGGGCCGGA GGCCACACGCAACGCCAAGGCCATCCTGGGGAAGGGCTGGA < 41bp 1 0.0188490017223262 1 0.0357722043991089 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79425696 chr17:79425713 nonsynonymous SNV 0.692 3 38 hm5C_associated_SNPs_20697 0 0 0 0 2 BAHCC1 chr17:79425647 3'AG 79425647 Downstream 67bp
chr17 79425713 79425713 1 + C T COAD 79425696 + 79425676 79425716 41 GGCCACACGCAACGCCAAGGCCATCCTGGGGAAGGGCCGGA GGCCACACGCAACGCCAAGGCCATCCTGGGGAAGGGCTGGA < 41bp 1 0.0188490017223262 1 0.0357722043991089 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79425696 chr17:79425713 nonsynonymous SNV 0.692 3 38 hm5C_associated_SNPs_20697 0 0 0 0 2 BAHCC1 chr17:79425751 5'GT 79425751 Upstream 39bp
chrX 153641559 153641559 1 + G T COAD 153641548 + 153641528 153641568 41 CTTTCCTGTCCTCTAGGGATCCTGAAACTCCGCCACATCTG CTTTCCTGTCCTCTAGGGATCCTGAAACTCCTCCACATCTG < 41bp 1 0.353034361279031 1 0.100788027048111 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAZ ENSG00000102125 CDS Human protein_coding chrX:153641548 chrX:153641559 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_20699 0 0 1 0 2 TAZ chrX:153641544 3'AG 153641544 Downstream 16bp
chrX 153641559 153641559 1 + G T COAD 153641548 + 153641528 153641568 41 CTTTCCTGTCCTCTAGGGATCCTGAAACTCCGCCACATCTG CTTTCCTGTCCTCTAGGGATCCTGAAACTCCTCCACATCTG < 41bp 1 0.353034361279031 1 0.100788027048111 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAZ ENSG00000102125 CDS Human protein_coding chrX:153641548 chrX:153641559 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_20699 0 0 1 0 2 TAZ chrX:153641589 5'GT 153641589 Upstream 31bp
chr19 11141565 11141565 1 + A C COAD 11141582 + 11141562 11141602 41 CTCACCAGGTAAAAGCGGGCCGGGCCCCAGGTCGAGGAGAA CTCCCCAGGTAAAAGCGGGCCGGGCCCCAGGTCGAGGAGAA < 41bp 1 0.202960838849361 1 0.347396731376648 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141582 chr19:11141565 nonsynonymous SNV 0.999 4 4 hm5C_associated_SNPs_20701 0 0 1 0 1 SMARCA4 chr19:11141569 5'GT 11141569 Upstream 5bp
chr2 46803717 46803717 1 + C T COAD 46803731 + 46803711 46803751 41 AGATGACCCCAAAACTTTAGCAAGACTGAATGATATGAAAG AGATGATCCCAAAACTTTAGCAAGACTGAATGATATGAAAG < 41bp 1 0.647989727544266 1 0.541305661201477 experiment 0.704020544911468 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHOQ ENSG00000119729 CDS Human protein_coding chr2:46803731 chr2:46803717 synonymous SNV . 0 7 hm5C_associated_SNPs_20703 0 0 1 0 2 RHOQ chr2:46803700 3'AG 46803700 Downstream 18bp
chr2 46803717 46803717 1 + C T COAD 46803731 + 46803711 46803751 41 AGATGACCCCAAAACTTTAGCAAGACTGAATGATATGAAAG AGATGATCCCAAAACTTTAGCAAGACTGAATGATATGAAAG < 41bp 1 0.647989727544266 1 0.541305661201477 experiment 0.704020544911468 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHOQ ENSG00000119729 CDS Human protein_coding chr2:46803731 chr2:46803717 synonymous SNV . 0 7 hm5C_associated_SNPs_20703 0 0 1 0 2 RHOQ chr2:46803795 5'GT 46803795 Upstream 79bp
chr11 63719956 63719956 1 + T C COAD 63719969 + 63719949 63719989 41 TACCTCATCGCGTGGGAAAACAGCTCCGTCCCTGTTGCCTT TACCTCACCGCGTGGGAAAACAGCTCCGTCCCTGTTGCCTT < 41bp 1 0.612259259100026 1 0.718236207962036 experiment 0.775481481799948 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAA40 ENSG00000110583 CDS Human protein_coding chr11:63719969 chr11:63719956 nonsynonymous SNV 0.991 2 8 hm5C_associated_SNPs_20704 0 0 1 0 2 NAA40 chr11:63719879 3'AG 63719879 Downstream 78bp
chr11 63719956 63719956 1 + T C COAD 63719969 + 63719949 63719989 41 TACCTCATCGCGTGGGAAAACAGCTCCGTCCCTGTTGCCTT TACCTCACCGCGTGGGAAAACAGCTCCGTCCCTGTTGCCTT < 41bp 1 0.612259259100026 1 0.718236207962036 experiment 0.775481481799948 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAA40 ENSG00000110583 CDS Human protein_coding chr11:63719969 chr11:63719956 nonsynonymous SNV 0.991 2 8 hm5C_associated_SNPs_20704 0 0 1 0 2 NAA40 chr11:63720037 5'GT 63720037 Upstream 82bp
chr6 29976018 29976018 1 + C T COAD 29976024 + 29976004 29976044 41 AACATGAGGCATAACGAGGTCCTGGGTTCTGGGCTTCTACC AACATGAGGCATAATGAGGTCCTGGGTTCTGGGCTTCTACC < 41bp 1 0.174321535738081 1 0.239664971828461 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-J ENSG00000204622 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:29976024 chr6:29976018 . . 0 15 hm5C_associated_SNPs_20707 0 0 0 0 1 HLA-J chr6:29975966 3'AG 29975966 Downstream 53bp
chr6 29976018 29976018 1 + C T COAD 29976025 + 29976005 29976045 41 ACATGAGGCATAACGAGGTCCTGGGTTCTGGGCTTCTACCC ACATGAGGCATAATGAGGTCCTGGGTTCTGGGCTTCTACCC < 41bp 1 0.523043487840369 1 0.719613909721375 experiment 0.953913024319262 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HLA-J ENSG00000204622 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:29976025 chr6:29976018 . . 0 14 hm5C_associated_SNPs_20708 0 0 0 0 1 HLA-J chr6:29975966 3'AG 29975966 Downstream 53bp
chr11 126124304 126124304 1 + C T COAD 126124316 + 126124296 126124336 41 TATCAGAACGTGCTCAGGAACACTGAAGTCATGGTGAGTGG TATCAGAATGTGCTCAGGAACACTGAAGTCATGGTGAGTGG < 41bp 1 0.661040193463112 1 0.0582033097743988 experiment 0.677919613073775 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAM118B ENSG00000197798 CDS Human protein_coding chr11:126124316 chr11:126124304 synonymous SNV . 0 9 hm5C_associated_SNPs_20710 0 0 1 0 1 FAM118B chr11:126124328 5'GT 126124328 Upstream 25bp
chr12 31242360 31242360 1 + G A COAD 31242340 + 31242320 31242360 41 TTTCTCCTTTGCTGCAGAACCTTTGTGTAAATGAAGACGTG TTTCTCCTTTGCTGCAGAACCTTTGTGTAAATGAAGACGTA < 41bp 1 0.178886487055053 1 0.100646138191223 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31242340 chr12:31242360 synonymous SNV . 0 41 hm5C_associated_SNPs_20714 0 0 1 0 2 DDX11 chr12:31242337 3'AG 31242337 Downstream 24bp
chr12 31242360 31242360 1 + G A COAD 31242340 + 31242320 31242360 41 TTTCTCCTTTGCTGCAGAACCTTTGTGTAAATGAAGACGTG TTTCTCCTTTGCTGCAGAACCTTTGTGTAAATGAAGACGTA < 41bp 1 0.178886487055053 1 0.100646138191223 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31242340 chr12:31242360 synonymous SNV . 0 41 hm5C_associated_SNPs_20714 0 0 1 0 2 DDX11 chr12:31242424 5'GT 31242424 Upstream 65bp
chr6 31594935 31594935 1 + G A COAD 31594939 + 31594919 31594959 41 CTACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC CTACCCCCACCTCACCAGGGCCCCGCCGGGAACTGGGGCCC < 41bp 1 0.314963511691248 1 0.0947019755840302 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594939 chr6:31594935 nonsynonymous SNV 0.995 1 17 hm5C_associated_SNPs_20715 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 41bp
chr6 31594935 31594935 1 + G A COAD 31594940 + 31594920 31594960 41 TACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC TACCCCCACCTCACCAGGGCCCCGCCGGGAACTGGGGCCCC < 41bp 1 0.266620200037898 1 0.111638307571411 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594940 chr6:31594935 nonsynonymous SNV 0.995 1 16 hm5C_associated_SNPs_20716 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 41bp
chr6 31594935 31594935 1 + G A COAD 31594941 + 31594921 31594961 41 ACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC ACCCCCACCTCACCAGGGCCCCGCCGGGAACTGGGGCCCCC < 41bp 1 0.325194310945789 1 0.167896419763565 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594941 chr6:31594935 nonsynonymous SNV 0.995 1 15 hm5C_associated_SNPs_20717 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 41bp
chr6 31594935 31594935 1 + G A COAD 31594942 + 31594922 31594962 41 CCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCC CCCCCACCTCACCAGGGCCCCGCCGGGAACTGGGGCCCCCC < 41bp 1 0.549831242520772 1 0.479517370462418 experiment 0.900337514958457 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594942 chr6:31594935 nonsynonymous SNV 0.995 1 14 hm5C_associated_SNPs_20718 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 41bp
chr11 108206581 108206581 1 + G A COAD 108206601 + 108206581 108206621 41 GACCTGAGACAAGATGCTGTCATGCAACAGGTCTTCCAGAT AACCTGAGACAAGATGCTGTCATGCAACAGGTCTTCCAGAT < 41bp 1 0.176483462405723 1 0.204371392726898 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108206601 chr11:108206581 nonsynonymous SNV 1.000 5 1 hm5C_associated_SNPs_20720 0 0 1 0 1 ATM chr11:108206572 3'AG 108206572 Downstream 10bp
chr16 449400 449400 1 + G A COAD 449415 + 449395 449435 41 TTGCCGAGCACTACCAGGACCTGCGGAGGAAGCCCTTCTAC TTGCCAAGCACTACCAGGACCTGCGGAGGAAGCCCTTCTAC < 41bp 1 0.743650257665356 1 0.390757918357849 experiment 0.512699484669289 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NME4 ENSG00000103202 CDS Human protein_coding chr16:449415 chr16:449400 nonsynonymous SNV 0.778 0 6 hm5C_associated_SNPs_20722 0 0 1 0 1 NME4 chr16:449379 3'AG 449379 Downstream 22bp
chr2 227729833 227729833 1 + G A COAD 227729840 + 227729820 227729860 41 GAGCTGTGCTGTAGGTTTCTCAGGTAAGGGAGACAAAATTT GAGCTGTGCTGTAAGTTTCTCAGGTAAGGGAGACAAAATTT < 41bp 1 0.653636499310703 1 0.492668092250824 experiment 0.692727001378594 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RHBDD1 ENSG00000144468 CDS Human protein_coding chr2:227729840 chr2:227729833 nonsynonymous SNV 0.938 5 14 hm5C_associated_SNPs_20723 0 0 1 0 1 RHBDD1 chr2:227729842 5'GT 227729842 Upstream 10bp
chr7 73731907 73731907 1 + G A COAD 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AAGCCCAGCGGCCTGAAGCCCCCCAGCCGTGGGGGGAAGCA < 41bp 1 0.393373121759545 1 0.276349872350693 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731907 nonsynonymous SNV 0.979 1 25 hm5C_associated_SNPs_20724 0 0 0 0 2 CLIP2 chr7:73731810 3'AG 73731810 Downstream 98bp
chr7 73731907 73731907 1 + G A COAD 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AAGCCCAGCGGCCTGAAGCCCCCCAGCCGTGGGGGGAAGCA < 41bp 1 0.393373121759545 1 0.276349872350693 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731907 nonsynonymous SNV 0.979 1 25 hm5C_associated_SNPs_20724 0 0 0 0 2 CLIP2 chr7:73731997 5'GT 73731997 Upstream 91bp
chr7 73731907 73731907 1 + G A COAD 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC AGCCCAGCGGCCTGAAGCCCCCCAGCCGTGGGGGGAAGCAC < 41bp 1 0.20554132657255 1 0.0744117498397827 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731907 nonsynonymous SNV 0.979 1 24 hm5C_associated_SNPs_20725 0 0 0 0 2 CLIP2 chr7:73731810 3'AG 73731810 Downstream 98bp
chr7 73731907 73731907 1 + G A COAD 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC AGCCCAGCGGCCTGAAGCCCCCCAGCCGTGGGGGGAAGCAC < 41bp 1 0.20554132657255 1 0.0744117498397827 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731907 nonsynonymous SNV 0.979 1 24 hm5C_associated_SNPs_20725 0 0 0 0 2 CLIP2 chr7:73731997 5'GT 73731997 Upstream 91bp
chr7 73731907 73731907 1 + G A COAD 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT GCCCAGCGGCCTGAAGCCCCCCAGCCGTGGGGGGAAGCACT < 41bp 1 0.0982482867925179 1 0.23232427239418 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731907 nonsynonymous SNV 0.979 1 23 hm5C_associated_SNPs_20726 0 0 0 0 2 CLIP2 chr7:73731810 3'AG 73731810 Downstream 98bp
chr7 73731907 73731907 1 + G A COAD 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT GCCCAGCGGCCTGAAGCCCCCCAGCCGTGGGGGGAAGCACT < 41bp 1 0.0982482867925179 1 0.23232427239418 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731907 nonsynonymous SNV 0.979 1 23 hm5C_associated_SNPs_20726 0 0 0 0 2 CLIP2 chr7:73731997 5'GT 73731997 Upstream 91bp
chr7 73731907 73731907 1 + G A COAD 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC CCCAGCGGCCTGAAGCCCCCCAGCCGTGGGGGGAAGCACTC < 41bp 1 0.343846647390804 1 0.331148386001587 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731907 nonsynonymous SNV 0.979 1 22 hm5C_associated_SNPs_20727 0 0 0 0 2 CLIP2 chr7:73731810 3'AG 73731810 Downstream 98bp
chr7 73731907 73731907 1 + G A COAD 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC CCCAGCGGCCTGAAGCCCCCCAGCCGTGGGGGGAAGCACTC < 41bp 1 0.343846647390804 1 0.331148386001587 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731907 nonsynonymous SNV 0.979 1 22 hm5C_associated_SNPs_20727 0 0 0 0 2 CLIP2 chr7:73731997 5'GT 73731997 Upstream 91bp
chr10 129866475 129866475 1 + T C COAD 129866472 + 129866452 129866492 41 CTTCGGAGTGCCTTTTACCCCCATTGGGATGCTGAAGTTCC CTTCGGAGTGCCTTTTACCCCCACTGGGATGCTGAAGTTCC < 41bp 1 0.208866457753524 1 0.0620485544204712 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRE ENSG00000132334 CDS Human protein_coding chr10:129866472 chr10:129866475 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_20728 0 0 0 3 1 PTPRE chr10:129866387 3'AG 129866387 Downstream 89bp
chr1 230384963 230384963 1 + A G COAD 230384969 + 230384949 230384989 41 ATTCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCC ATTCAAGTGGGATTGCATGACGCCTGAGCAGAGAAGGTCCC < 41bp 1 0.528431795550796 1 0.390819668769836 experiment 0.943136408898408 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384969 chr1:230384963 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_20730 0 0 1 0 2 GALNT2 chr1:230384930 3'AG 230384930 Downstream 34bp
chr1 230384963 230384963 1 + A G COAD 230384969 + 230384949 230384989 41 ATTCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCC ATTCAAGTGGGATTGCATGACGCCTGAGCAGAGAAGGTCCC < 41bp 1 0.528431795550796 1 0.390819668769836 experiment 0.943136408898408 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384969 chr1:230384963 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_20730 0 0 1 0 2 GALNT2 chr1:230385017 5'GT 230385017 Upstream 55bp
chr1 230384963 230384963 1 + A G COAD 230384971 + 230384951 230384991 41 TCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCCGG TCAAGTGGGATTGCATGACGCCTGAGCAGAGAAGGTCCCGG < 41bp 1 0.366958723857119 1 0.0735989511013031 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384971 chr1:230384963 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_20731 0 0 1 0 2 GALNT2 chr1:230384930 3'AG 230384930 Downstream 34bp
chr1 230384963 230384963 1 + A G COAD 230384971 + 230384951 230384991 41 TCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCCGG TCAAGTGGGATTGCATGACGCCTGAGCAGAGAAGGTCCCGG < 41bp 1 0.366958723857119 1 0.0735989511013031 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384971 chr1:230384963 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_20731 0 0 1 0 2 GALNT2 chr1:230385017 5'GT 230385017 Upstream 55bp
chrX 11781098 11781098 1 + A G COAD 11781084 + 11781064 11781104 41 CACGTTATGCCACATGCCAACATGAACGTGCATTATATCCC CACGTTATGCCACATGCCAACATGAACGTGCATTGTATCCC < 41bp 1 0.594364357339142 1 0.0483740866184235 experiment 0.811271285321717 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MSL3 ENSG00000005302 CDS Human protein_coding chrX:11781084 chrX:11781098 nonsynonymous SNV 0.999 2 35 hm5C_associated_SNPs_20732 0 0 1 0 1 MSL3 chrX:11781116 5'GT 11781116 Upstream 19bp
chr12 110032884 110032884 1 + G A COAD 110032880 + 110032860 110032900 41 CTGAATGCCCTCGGCGTGGGCCACGCCTCTCTGGACCAGCT CTGAATGCCCTCGGCGTGGGCCACACCTCTCTGGACCAGCT < 41bp 1 0.285995988125116 1 0.121234834194183 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MVK ENSG00000110921 CDS Human protein_coding chr12:110032880 chr12:110032884 nonsynonymous SNV 0.235 1 25 hm5C_associated_SNPs_20733 0 0 1 0 1 MVK chr12:110032833 3'AG 110032833 Downstream 52bp
chr7 140379043 140379043 1 + G A COAD 140379056 + 140379036 140379076 41 CCTCTGCGCCCCTTTGTCACCAGAGAAGTCTTGGTGGAAAC CCTCTGCACCCCTTTGTCACCAGAGAAGTCTTGGTGGAAAC < 41bp 1 0.570935841063828 1 0.734023034572601 experiment 0.858128317872344 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140379056 chr7:140379043 nonsynonymous SNV 0.883 0 8 hm5C_associated_SNPs_20734 0 0 1 0 2 ADCK2 chr7:140378955 3'AG 140378955 Downstream 89bp
chr7 140379043 140379043 1 + G A COAD 140379056 + 140379036 140379076 41 CCTCTGCGCCCCTTTGTCACCAGAGAAGTCTTGGTGGAAAC CCTCTGCACCCCTTTGTCACCAGAGAAGTCTTGGTGGAAAC < 41bp 1 0.570935841063828 1 0.734023034572601 experiment 0.858128317872344 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140379056 chr7:140379043 nonsynonymous SNV 0.883 0 8 hm5C_associated_SNPs_20734 0 0 1 0 2 ADCK2 chr7:140379083 5'GT 140379083 Upstream 41bp
chr10 43971260 43971260 1 + T C COAD 43971248 + 43971228 43971268 41 GGACTCTGCTCAGAGGACCCCGTACAGAGACATGATGCTGG GGACTCTGCTCAGAGGACCCCGTACAGAGACACGATGCTGG < 41bp 1 0.391649731862259 1 0.343517273664474 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF487 ENSG00000243660 CDS Human protein_coding chr10:43971248 chr10:43971260 nonsynonymous SNV 0.052 1 33 hm5C_associated_SNPs_20735 0 0 0 0 2 ZNF487 chr10:43971169 3'AG 43971169 Downstream 92bp
chr10 43971260 43971260 1 + T C COAD 43971248 + 43971228 43971268 41 GGACTCTGCTCAGAGGACCCCGTACAGAGACATGATGCTGG GGACTCTGCTCAGAGGACCCCGTACAGAGACACGATGCTGG < 41bp 1 0.391649731862259 1 0.343517273664474 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF487 ENSG00000243660 CDS Human protein_coding chr10:43971248 chr10:43971260 nonsynonymous SNV 0.052 1 33 hm5C_associated_SNPs_20735 0 0 0 0 2 ZNF487 chr10:43971295 5'GT 43971295 Upstream 36bp
chr6 43155545 43155545 1 + C T COAD 43155540 + 43155520 43155560 41 CTCAGTAGTCGATTTGAGGGCAGCACTCTCAATGACCTGCT CTCAGTAGTCGATTTGAGGGCAGCATTCTCAATGACCTGCT < 41bp 1 0.594234426116058 1 0.129862308502197 experiment 0.811531147767884 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43155540 chr6:43155545 nonsynonymous SNV 0.968 1 26 hm5C_associated_SNPs_20736 0 0 0 0 1 CUL9 chr6:43155451 3'AG 43155451 Downstream 95bp
chr3 50091791 50091791 1 + C T COAD 50091805 + 50091785 50091825 41 TGGGCACCGATCTTCCTGTTCATTCTGCAAGAACCCAAGAG TGGGCATCGATCTTCCTGTTCATTCTGCAAGAACCCAAGAG < 41bp 1 0.0589785914824919 1 0.0194380879402161 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50091805 chr3:50091791 nonsynonymous SNV . 0 7 hm5C_associated_SNPs_20739 0 0 1 0 1 RBM6 chr3:50091828 5'GT 50091828 Upstream 38bp
chr13 114203838 114203838 1 + A G COAD 114203825 + 114203805 114203845 41 TGCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCA TGCAATCACGAGGTGTGTGCCCAGACCGGAGAGGCGGTCCA < 41bp 1 0.718825351065627 1 0.199345588684082 experiment 0.562349297868746 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114203825 chr13:114203838 synonymous SNV . 0 34 hm5C_associated_SNPs_20740 0 0 0 0 1 TMCO3 chr13:114203740 3'AG 114203740 Downstream 99bp
chr13 114203838 114203838 1 + A G COAD 114203826 + 114203806 114203846 41 GCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCAG GCAATCACGAGGTGTGTGCCCAGACCGGAGAGGCGGTCCAG < 41bp 1 0.629846424906257 1 0.210719019174576 experiment 0.740307150187486 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114203826 chr13:114203838 synonymous SNV . 0 33 hm5C_associated_SNPs_20741 0 0 0 0 1 TMCO3 chr13:114203740 3'AG 114203740 Downstream 99bp
chr8 104452459 104452459 1 + T A COAD 104452461 + 104452441 104452481 41 GATCTGATGAAATGAACATTCGCCTGTGGAAAGCTAATGCT GATCTGATGAAATGAACAATCGCCTGTGGAAAGCTAATGCT < 41bp 1 0.775959332662013 1 0.425932675600052 experiment 0.448081334675974 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104452461 chr8:104452459 nonsynonymous SNV 0.998 4 19 hm5C_associated_SNPs_20742 0 0 1 0 1 DCAF13 chr8:104452364 3'AG 104452364 Downstream 96bp
chr14 105936304 105936304 1 + T C COAD 105936285 + 105936265 105936305 41 CGGCGGCGGATGAACTGGATCGACGCCCCGGATGACGTGTT CGGCGGCGGATGAACTGGATCGACGCCCCGGATGACGTGCT < 41bp 1 0.508479975769267 1 0.678425908088684 experiment 0.983040048461467 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936285 chr14:105936304 nonsynonymous SNV 0.989 1 40 hm5C_associated_SNPs_20744 0 0 1 1 1 MTA1 chr14:105936329 5'GT 105936329 Upstream 26bp
chr14 105936304 105936304 1 + T C COAD 105936315 + 105936295 105936335 41 GATGACGTGTTCTACATGGCCACAGAGGAGACCAGGTGGGG GATGACGTGCTCTACATGGCCACAGAGGAGACCAGGTGGGG < 41bp 1 0.557400716677323 1 0.757834672927856 experiment 0.885198566645354 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936315 chr14:105936304 nonsynonymous SNV 0.989 1 10 hm5C_associated_SNPs_20745 0 0 1 1 1 MTA1 chr14:105936329 5'GT 105936329 Upstream 26bp
chr14 105936304 105936304 1 + T C COAD 105936317 + 105936297 105936337 41 TGACGTGTTCTACATGGCCACAGAGGAGACCAGGTGGGGCC TGACGTGCTCTACATGGCCACAGAGGAGACCAGGTGGGGCC < 41bp 1 0.62621413888414 1 0.744315326213837 experiment 0.74757172223172 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936317 chr14:105936304 nonsynonymous SNV 0.989 1 8 hm5C_associated_SNPs_20746 0 0 1 1 1 MTA1 chr14:105936329 5'GT 105936329 Upstream 26bp
chr9 35389883 35389883 1 + G A COAD 35389874 + 35389854 35389894 41 ACCTCCAGAGGAACAAGGGCCCAGCATTCGGAACCTGGATT ACCTCCAGAGGAACAAGGGCCCAGCATTCAGAACCTGGATT < 41bp 1 0.0762310902433622 1 0.104371607303619 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UNC13B ENSG00000198722 CDS Human protein_coding chr9:35389874 chr9:35389883 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_20748 0 0 1 0 2 UNC13B chr9:35389843 3'AG 35389843 Downstream 41bp
chr9 35389883 35389883 1 + G A COAD 35389874 + 35389854 35389894 41 ACCTCCAGAGGAACAAGGGCCCAGCATTCGGAACCTGGATT ACCTCCAGAGGAACAAGGGCCCAGCATTCAGAACCTGGATT < 41bp 1 0.0762310902433622 1 0.104371607303619 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UNC13B ENSG00000198722 CDS Human protein_coding chr9:35389874 chr9:35389883 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_20748 0 0 1 0 2 UNC13B chr9:35389970 5'GT 35389970 Upstream 88bp
chr7 87005027 87005027 1 + A G COAD 87005024 + 87005004 87005044 41 CAGCATTAACTAGTGAGGAGCGAACTCGATGGGCTAAGGTT CAGCATTAACTAGTGAGGAGCGAGCTCGATGGGCTAAGGTT < 41bp 1 0.331125428162424 1 0.422387301921844 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CROT ENSG00000005469 CDS Human protein_coding chr7:87005024 chr7:87005027 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_20752 0 0 1 0 2 CROT chr7:87004948 3'AG 87004948 Downstream 80bp
chr7 87005027 87005027 1 + A G COAD 87005024 + 87005004 87005044 41 CAGCATTAACTAGTGAGGAGCGAACTCGATGGGCTAAGGTT CAGCATTAACTAGTGAGGAGCGAGCTCGATGGGCTAAGGTT < 41bp 1 0.331125428162424 1 0.422387301921844 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CROT ENSG00000005469 CDS Human protein_coding chr7:87005024 chr7:87005027 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_20752 0 0 1 0 2 CROT chr7:87005041 5'GT 87005041 Upstream 15bp
chr19 51227336 51227336 1 + G T COAD 51227338 + 51227318 51227358 41 CCCACCCCTGAGGACATCGTCACTTACATCCGTGAGTAACC CCCACCCCTGAGGACATCTTCACTTACATCCGTGAGTAACC < 41bp 1 0.175515614572128 1 0.0460518300533295 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CLEC11A ENSG00000105472 CDS Human protein_coding chr19:51227338 chr19:51227336 nonsynonymous SNV 0.870 0 19 hm5C_associated_SNPs_20753 0 0 0 0 1 CLEC11A chr19:51227348 5'GT 51227348 Upstream 13bp
chr12 71977626 71977626 1 + G A COAD 71977616 + 71977596 71977636 41 GAACATGCTCACGGGAGTCTCCAGTGCCGTGCTGGCTGGTG GAACATGCTCACGGGAGTCTCCAGTGCCGTACTGGCTGGTG < 41bp 1 0.465961649866001 1 0.804587841033936 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LGR5 ENSG00000139292 CDS Human protein_coding chr12:71977616 chr12:71977626 synonymous SNV . 0 31 hm5C_associated_SNPs_20755 0 0 1 0 1 LGR5 chr12:71977692 5'GT 71977692 Upstream 67bp
chr14 51057728 51057728 1 + C T COAD 51057723 + 51057703 51057743 41 TTTTTCATGGAGAGGTGGATCTGAGCGAGAGACCACAGGAA TTTTTCATGGAGAGGTGGATCTGAGTGAGAGACCACAGGAA < 41bp 1 0.726718897561285 1 0.268705070018768 experiment 0.546562204877431 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATL1 ENSG00000198513 CDS Human protein_coding chr14:51057723 chr14:51057728 stopgain 0.997 1 26 hm5C_associated_SNPs_20756 0 0 0 0 2 ATL1 chr14:51057659 3'AG 51057659 Downstream 70bp
chr14 51057728 51057728 1 + C T COAD 51057723 + 51057703 51057743 41 TTTTTCATGGAGAGGTGGATCTGAGCGAGAGACCACAGGAA TTTTTCATGGAGAGGTGGATCTGAGTGAGAGACCACAGGAA < 41bp 1 0.726718897561285 1 0.268705070018768 experiment 0.546562204877431 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATL1 ENSG00000198513 CDS Human protein_coding chr14:51057723 chr14:51057728 stopgain 0.997 1 26 hm5C_associated_SNPs_20756 0 0 0 0 2 ATL1 chr14:51057793 5'GT 51057793 Upstream 66bp
chr16 30096341 30096341 1 + G T COAD 30096347 + 30096327 30096367 41 CCCCAAGAGACACGGGGCATCCCCTCCAAGAAGCCCGTGGC CCCCAAGAGACACGTGGCATCCCCTCCAAGAAGCCCGTGGC < 41bp 1 0.316594357873112 1 0.239750683307648 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP4C ENSG00000149923 CDS Human protein_coding chr16:30096347 chr16:30096341 synonymous SNV . 0 15 hm5C_associated_SNPs_20757 0 0 1 1 1 PPP4C chr16:30096254 3'AG 30096254 Downstream 88bp
chr11 244741 244741 1 + G A COAD 244747 + 244727 244767 41 TAAAATTAAACATCGGGGACCTACAGGTTACAAAGGTGAGA TAAAATTAAACATCAGGGACCTACAGGTTACAAAGGTGAGA < 41bp 1 0.316884040433787 1 0.15288171172142 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMD13 ENSG00000185627 CDS Human protein_coding chr11:244747 chr11:244741 nonsynonymous SNV 0.968 2 15 hm5C_associated_SNPs_20758 0 0 1 0 2 PSMD13 chr11:244675 3'AG 244675 Downstream 67bp
chr11 244741 244741 1 + G A COAD 244747 + 244727 244767 41 TAAAATTAAACATCGGGGACCTACAGGTTACAAAGGTGAGA TAAAATTAAACATCAGGGACCTACAGGTTACAAAGGTGAGA < 41bp 1 0.316884040433787 1 0.15288171172142 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMD13 ENSG00000185627 CDS Human protein_coding chr11:244747 chr11:244741 nonsynonymous SNV 0.968 2 15 hm5C_associated_SNPs_20758 0 0 1 0 2 PSMD13 chr11:244761 5'GT 244761 Upstream 21bp
chr19 1295783 1295783 1 + C G COAD 1295771 + 1295751 1295791 41 GCCCGCGGCGCCCGGGGGGCCGCTCAAGTTCTCGGAGAAGT GCCCGCGGCGCCCGGGGGGCCGCTCAAGTTCTGGGAGAAGT < 41bp 1 0.137211908256527 1 0.426900446414948 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EFNA2 ENSG00000099617 CDS Human protein_coding chr19:1295771 chr19:1295783 nonsynonymous SNV 0.995 4 33 hm5C_associated_SNPs_20764 0 0 0 0 1 EFNA2 chr19:1295857 5'GT 1295857 Upstream 75bp
chr11 118403848 118403848 1 + G A COAD 118403838 + 118403818 118403858 41 TCACCAACCACACGGTGCAGCTGCAGCTCCGCAGCCTGGCA TCACCAACCACACGGTGCAGCTGCAGCTCCACAGCCTGGCA < 41bp 1 0.725143300554843 1 0.786434352397919 experiment 0.549713398890313 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118403838 chr11:118403848 nonsynonymous SNV 0.997 0 31 hm5C_associated_SNPs_20765 0 0 0 0 1 TMEM25 chr11:118403922 5'GT 118403922 Upstream 75bp
chr6 144747512 144747512 1 + G A COAD 144747498 + 144747478 144747518 41 AGATCCTGCTCAGCTGGGTGCGTCAGACCACCAGGCCCTAC AGATCCTGCTCAGCTGGGTGCGTCAGACCACCAGACCCTAC < 41bp 1 0.258791656425398 1 0.115828961133957 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144747498 chr6:144747512 synonymous SNV . 0 35 hm5C_associated_SNPs_20766 0 0 1 0 2 UTRN chr6:144747423 3'AG 144747423 Downstream 90bp
chr6 144747512 144747512 1 + G A COAD 144747498 + 144747478 144747518 41 AGATCCTGCTCAGCTGGGTGCGTCAGACCACCAGGCCCTAC AGATCCTGCTCAGCTGGGTGCGTCAGACCACCAGACCCTAC < 41bp 1 0.258791656425398 1 0.115828961133957 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144747498 chr6:144747512 synonymous SNV . 0 35 hm5C_associated_SNPs_20766 0 0 1 0 2 UTRN chr6:144747595 5'GT 144747595 Upstream 84bp
chr14 102445749 102445749 1 + C T COAD 102445731 + 102445711 102445751 41 CAGCTCCGGGTCCTTACACTCAGTGAAGACTCGCCCTACGA CAGCTCCGGGTCCTTACACTCAGTGAAGACTCGCCCTATGA < 41bp 1 0.203208279956009 1 0.605157017707825 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102445731 chr14:102445749 synonymous SNV . 0 39 hm5C_associated_SNPs_20767 0 0 1 0 2 DYNC1H1 chr14:102445656 3'AG 102445656 Downstream 94bp
chr14 102445749 102445749 1 + C T COAD 102445731 + 102445711 102445751 41 CAGCTCCGGGTCCTTACACTCAGTGAAGACTCGCCCTACGA CAGCTCCGGGTCCTTACACTCAGTGAAGACTCGCCCTATGA < 41bp 1 0.203208279956009 1 0.605157017707825 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102445731 chr14:102445749 synonymous SNV . 0 39 hm5C_associated_SNPs_20767 0 0 1 0 2 DYNC1H1 chr14:102445829 5'GT 102445829 Upstream 81bp
chr20 44526685 44526685 1 + C T COAD 44526703 + 44526683 44526723 41 GACAGCGGGGAGCAGATTGCCGGCTTCGTGAAGGAGTTCTC GATAGCGGGGAGCAGATTGCCGGCTTCGTGAAGGAGTTCTC < 41bp 1 0.726051472757657 1 0.709046125411987 experiment 0.547897054484687 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44526703 chr20:44526685 synonymous SNV . 0 3 hm5C_associated_SNPs_20769 0 0 1 0 2 CTSA chr20:44526644 3'AG 44526644 Downstream 42bp
chr20 44526685 44526685 1 + C T COAD 44526703 + 44526683 44526723 41 GACAGCGGGGAGCAGATTGCCGGCTTCGTGAAGGAGTTCTC GATAGCGGGGAGCAGATTGCCGGCTTCGTGAAGGAGTTCTC < 41bp 1 0.726051472757657 1 0.709046125411987 experiment 0.547897054484687 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44526703 chr20:44526685 synonymous SNV . 0 3 hm5C_associated_SNPs_20769 0 0 1 0 2 CTSA chr20:44526748 5'GT 44526748 Upstream 64bp
chr5 176468195 176468195 1 + C T COAD 176468185 + 176468165 176468205 41 AACACCCAGTGTAAGGTTTGCTGCGCCTTGCTTATTTCTGA AACACCCAGTGTAAGGTTTGCTGCGCCTTGTTTATTTCTGA < 41bp 1 0.426910484551455 1 0.119156390428543 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF346 ENSG00000113761 CDS Human protein_coding chr5:176468185 chr5:176468195 nonsynonymous SNV 0.937 4 31 hm5C_associated_SNPs_20770 0 0 1 0 2 ZNF346 chr5:176468127 3'AG 176468127 Downstream 69bp
chr5 176468195 176468195 1 + C T COAD 176468185 + 176468165 176468205 41 AACACCCAGTGTAAGGTTTGCTGCGCCTTGCTTATTTCTGA AACACCCAGTGTAAGGTTTGCTGCGCCTTGTTTATTTCTGA < 41bp 1 0.426910484551455 1 0.119156390428543 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF346 ENSG00000113761 CDS Human protein_coding chr5:176468185 chr5:176468195 nonsynonymous SNV 0.937 4 31 hm5C_associated_SNPs_20770 0 0 1 0 2 ZNF346 chr5:176468230 5'GT 176468230 Upstream 36bp
chr19 45801166 45801166 1 + C A COAD 45801148 + 45801128 45801168 41 CCCATGAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCCCC CCCATGAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCACC < 41bp 1 0.349444360676973 1 0.265886813402176 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801148 chr19:45801166 nonsynonymous SNV 0.992 0 39 hm5C_associated_SNPs_20771 0 0 1 0 1 MARK4 chr19:45801212 5'GT 45801212 Upstream 47bp
chr19 45801166 45801166 1 + C A COAD 45801149 + 45801129 45801169 41 CCATGAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCCCCA CCATGAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCACCA < 41bp 1 0.355073937990103 1 0.157553374767303 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801149 chr19:45801166 nonsynonymous SNV 0.992 0 38 hm5C_associated_SNPs_20772 0 0 1 0 1 MARK4 chr19:45801212 5'GT 45801212 Upstream 47bp
chr19 45801166 45801166 1 + C A COAD 45801152 + 45801132 45801172 41 TGAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCCCCACCA TGAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCACCACCA < 41bp 1 0.53162106113114 1 0.792040228843689 experiment 0.93675787773772 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801152 chr19:45801166 nonsynonymous SNV 0.992 0 35 hm5C_associated_SNPs_20773 0 0 1 0 1 MARK4 chr19:45801212 5'GT 45801212 Upstream 47bp
chr19 45801166 45801166 1 + C A COAD 45801153 + 45801133 45801173 41 GAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCCCCACCAC GAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCACCACCAC < 41bp 1 0.635736500663341 1 0.931148409843445 experiment 0.728526998673318 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801153 chr19:45801166 nonsynonymous SNV 0.992 0 34 hm5C_associated_SNPs_20774 0 0 1 0 1 MARK4 chr19:45801212 5'GT 45801212 Upstream 47bp
chr17 37360385 37360385 1 + C T COAD 37360369 + 37360349 37360389 41 AAGGTGAAGGGGAATGTGTTCAAAAACAAGCGGATTCTCAT AAGGTGAAGGGGAATGTGTTCAAAAACAAGCGGATTTTCAT < 41bp 1 0.60767556218297 1 0.366752326488495 experiment 0.784648875634061 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360369 chr17:37360385 nonsynonymous SNV 0.997 3 37 hm5C_associated_SNPs_20775 0 0 1 0 2 RPL19 chr17:37360330 3'AG 37360330 Downstream 56bp
chr17 37360385 37360385 1 + C T COAD 37360369 + 37360349 37360389 41 AAGGTGAAGGGGAATGTGTTCAAAAACAAGCGGATTCTCAT AAGGTGAAGGGGAATGTGTTCAAAAACAAGCGGATTTTCAT < 41bp 1 0.60767556218297 1 0.366752326488495 experiment 0.784648875634061 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360369 chr17:37360385 nonsynonymous SNV 0.997 3 37 hm5C_associated_SNPs_20775 0 0 1 0 2 RPL19 chr17:37360440 5'GT 37360440 Upstream 56bp
chr9 96411440 96411440 1 + G A COAD 96411460 + 96411440 96411480 41 GCACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCGAG ACACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCGAG < 41bp 1 0.472142893507484 1 0.36801078915596 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96411460 chr9:96411440 nonsynonymous SNV 0.995 1 1 hm5C_associated_SNPs_20776 0 0 1 0 2 PHF2 chr9:96411353 3'AG 96411353 Downstream 88bp
chr9 96411440 96411440 1 + G A COAD 96411460 + 96411440 96411480 41 GCACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCGAG ACACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCGAG < 41bp 1 0.472142893507484 1 0.36801078915596 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96411460 chr9:96411440 nonsynonymous SNV 0.995 1 1 hm5C_associated_SNPs_20776 0 0 1 0 2 PHF2 chr9:96411494 5'GT 96411494 Upstream 55bp
chr7 70252226 70252226 1 + C T COAD 70252228 + 70252208 70252248 41 GTTCGGCCACAAGGATGGCCCCAGTGTGCAGAACTTTAGCA GTTCGGCCACAAGGATGGTCCCAGTGTGCAGAACTTTAGCA < 41bp 1 0.142859920684513 1 0.0729041397571564 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:70252228 chr7:70252226 synonymous SNV . 0 19 hm5C_associated_SNPs_20777 0 0 1 0 1 AUTS2 chr7:70252195 3'AG 70252195 Downstream 32bp
chr4 3184085 3184085 1 + T C COAD 3184095 + 3184075 3184115 41 TTATAGGTGTTGGAGATGTTCATTCTTGTCCTGCAGCAGTG TTATAGGTGTCGGAGATGTTCATTCTTGTCCTGCAGCAGTG < 41bp 1 0.0669426654413366 1 0.0802604258060455 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3184095 chr4:3184085 nonsynonymous SNV 0.984 3 11 hm5C_associated_SNPs_20778 0 0 1 0 1 HTT chr4:3184081 3'AG 3184081 Downstream 5bp
chr11 18380169 18380169 1 + G A COAD 18380158 + 18380138 18380178 41 GACATTTCTGGTCCTGCTTTCCTGTTAATACGCCATTCCTA GACATTTCTGGTCCTGCTTTCCTGTTAATACACCATTCCTA < 41bp 1 0.143813540063265 1 0.0982573628425598 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GTF2H1 ENSG00000110768 CDS Human protein_coding chr11:18380158 chr11:18380169 synonymous SNV . 0 32 hm5C_associated_SNPs_20780 0 0 1 0 2 GTF2H1 chr11:18380072 3'AG 18380072 Downstream 98bp
chr11 18380169 18380169 1 + G A COAD 18380158 + 18380138 18380178 41 GACATTTCTGGTCCTGCTTTCCTGTTAATACGCCATTCCTA GACATTTCTGGTCCTGCTTTCCTGTTAATACACCATTCCTA < 41bp 1 0.143813540063265 1 0.0982573628425598 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GTF2H1 ENSG00000110768 CDS Human protein_coding chr11:18380158 chr11:18380169 synonymous SNV . 0 32 hm5C_associated_SNPs_20780 0 0 1 0 2 GTF2H1 chr11:18380187 5'GT 18380187 Upstream 19bp
chr1 97771751 97771751 1 - C T COAD 97771744 - 97771724 97771764 41 TATTGTGAGCATCGCAAGAGCTGCAAAGGAAGGTAAGAACT TATTGTGAGCATCACAAGAGCTGCAAAGGAAGGTAAGAACT < 41bp 1 0.571359574365244 1 0.310385942459106 experiment 0.857280851269512 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPYD ENSG00000188641 CDS Human protein_coding chr1:97771744 chr1:97771751 nonsynonymous SNV 0.999 4 14 hm5C_associated_SNPs_20781 1 0 0 0 1 DPYD chr1:97771733 5'GT 97771733 Upstream 19bp
chr16 19184800 19184800 1 + C T COAD 19184812 + 19184792 19184832 41 GGACCTGCCGGCACTGCTGTCAGAAGTGCTACGAGTCCAGC GGACCTGCTGGCACTGCTGTCAGAAGTGCTACGAGTCCAGC < 41bp 1 0.789922132995605 1 0.898391842842102 experiment 0.420155734008791 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYT17 ENSG00000103528 CDS Human protein_coding chr16:19184812 chr16:19184800 nonsynonymous SNV 0.978 2 9 hm5C_associated_SNPs_20782 0 0 0 0 1 SYT17 chr16:19184752 3'AG 19184752 Downstream 49bp
chr1 164790823 164790823 1 + G T COAD 164790815 + 164790795 164790835 41 ATCAGCCAGACAGGAGGATACAGTGATGGACTCGCAGCCAG ATCAGCCAGACAGGAGGATACAGTGATGTACTCGCAGCCAG < 41bp 1 0.678763109735108 1 0.435832232236862 experiment 0.642473780529784 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164790815 chr1:164790823 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_20783 0 0 1 0 1 PBX1 chr1:164790774 3'AG 164790774 Downstream 50bp
chr14 35649922 35649922 1 + A T COAD 35649907 + 35649887 35649927 41 ATTTGAGAACTTCATAAAATCTCGTCCTCCTTTTGATGTTG ATTTGAGAACTTCATAAAATCTCGTCCTCCTTTTGTTGTTG < 41bp 1 0.504438423941485 1 0.169967621564865 experiment 0.991123152117031 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA0391 ENSG00000100890;ENSG00000258790 CDS Human other chr14:35649907 chr14:35649922 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_20784 0 0 1 0 2 KIAA0391 chr14:35649876 3'AG 35649876 Downstream 47bp
chr14 35649922 35649922 1 + A T COAD 35649907 + 35649887 35649927 41 ATTTGAGAACTTCATAAAATCTCGTCCTCCTTTTGATGTTG ATTTGAGAACTTCATAAAATCTCGTCCTCCTTTTGTTGTTG < 41bp 1 0.504438423941485 1 0.169967621564865 experiment 0.991123152117031 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA0391 ENSG00000100890;ENSG00000258790 CDS Human other chr14:35649907 chr14:35649922 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_20784 0 0 1 0 2 KIAA0391 chr14:35649983 5'GT 35649983 Upstream 62bp
chr7 5643529 5643529 1 + C T COAD 5643510 + 5643490 5643530 41 ACAGGGGACTCAGAGCTCTTCCTCATGAAGCTCATCAACCG ACAGGGGACTCAGAGCTCTTCCTCATGAAGCTCATCAACTG < 41bp 1 0.367117765765315 1 0.0687339305877686 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5643510 chr7:5643529 nonsynonymous SNV 0.971 3 40 hm5C_associated_SNPs_20788 0 0 1 0 1 FSCN1 chr7:5643494 3'AG 5643494 Downstream 36bp
chr2 27302046 27302046 1 + C T COAD 27302048 + 27302028 27302068 41 ACACAGGTTCCAGTGGGGCCCTCAGCCCCGGGGGGCCCCAG ACACAGGTTCCAGTGGGGTCCTCAGCCCCGGGGGGCCCCAG < 41bp 1 0.537454286839729 1 0.292233288288116 experiment 0.925091426320541 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302048 chr2:27302046 nonsynonymous SNV 0.071 0 19 hm5C_associated_SNPs_20789 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 58bp
chr2 27302046 27302046 1 + C T COAD 27302063 + 27302043 27302083 41 GGGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCC GGGTCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCC < 41bp 1 0.367635368186749 1 0.0798784196376801 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302063 chr2:27302046 nonsynonymous SNV 0.071 0 4 hm5C_associated_SNPs_20790 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 58bp
chr2 27302046 27302046 1 + C T COAD 27302064 + 27302044 27302084 41 GGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCC GGTCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCC < 41bp 1 0.36869609048386 1 0.599306583404541 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302064 chr2:27302046 nonsynonymous SNV 0.071 0 3 hm5C_associated_SNPs_20791 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 58bp
chr2 27302046 27302046 1 + C T COAD 27302065 + 27302045 27302085 41 GCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCG GTCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCG < 41bp 1 0.628453120729614 1 0.738491177558899 experiment 0.743093758540771 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302065 chr2:27302046 nonsynonymous SNV 0.071 0 2 hm5C_associated_SNPs_20792 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 58bp
chr2 27302046 27302046 1 + C T COAD 27302066 + 27302046 27302086 41 CCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCGG TCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCGG < 41bp 1 0.635599175820158 1 0.808544814586639 experiment 0.728801648359684 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302066 chr2:27302046 nonsynonymous SNV 0.071 0 1 hm5C_associated_SNPs_20793 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 58bp
chr1 203821349 203821349 1 + T C COAD 203821365 + 203821345 203821385 41 AGCATGAAAACTCGCCGACTCAGCTCTGCCTCAACAGGAAA AGCACGAAAACTCGCCGACTCAGCTCTGCCTCAACAGGAAA < 41bp 1 0.486116702139321 1 0.261055171489716 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203821365 chr1:203821349 nonsynonymous SNV 0.095 0 5 hm5C_associated_SNPs_20794 0 0 0 0 1 ZC3H11A chr1:203821269 3'AG 203821269 Downstream 81bp
chr20 1902317 1902317 1 + A G COAD 1902319 + 1902299 1902339 41 ACGTCACCTTGCAGGGGGACCCTCTTCGTGGGACTGCCAAC ACGTCACCTTGCAGGGGGGCCCTCTTCGTGGGACTGCCAAC < 41bp 1 0.0552360461440926 1 0.0191630125045776 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1902319 chr20:1902317 nonsynonymous SNV 0.020 0 19 hm5C_associated_SNPs_20795 0 0 0 0 1 SIRPA chr20:1902358 5'GT 1902358 Upstream 42bp
chr2 70122252 70122252 1 + C T COAD 70122272 + 70122252 70122292 41 CGGGAGAGAGAACGCAGGCGCCGAGAAAGGTCCAGGTCTCG TGGGAGAGAGAACGCAGGCGCCGAGAAAGGTCCAGGTCTCG < 41bp 1 0.778756814538902 1 0.571089744567871 experiment 0.442486370922195 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70122272 chr2:70122252 nonsynonymous SNV 0.950 3 1 hm5C_associated_SNPs_20797 0 0 1 0 2 SNRNP27 chr2:70122226 3'AG 70122226 Downstream 27bp
chr2 70122252 70122252 1 + C T COAD 70122272 + 70122252 70122292 41 CGGGAGAGAGAACGCAGGCGCCGAGAAAGGTCCAGGTCTCG TGGGAGAGAGAACGCAGGCGCCGAGAAAGGTCCAGGTCTCG < 41bp 1 0.778756814538902 1 0.571089744567871 experiment 0.442486370922195 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70122272 chr2:70122252 nonsynonymous SNV 0.950 3 1 hm5C_associated_SNPs_20797 0 0 1 0 2 SNRNP27 chr2:70122346 5'GT 70122346 Upstream 95bp
chr5 54720592 54720592 1 + T G COAD 54720581 + 54720561 54720601 41 CAAGAGAGATATTGTGTTTGCTGCCAGCCTCTACTTGTAGA CAAGAGAGATATTGTGTTTGCTGCCAGCCTCGACTTGTAGA < 41bp 1 0.273415766530839 1 0.124786466360092 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54720581 chr5:54720592 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_20798 0 0 1 0 1 SKIV2L2 chr5:54720548 3'AG 54720548 Downstream 45bp
chr6 109763755 109763755 1 + G A COAD 109763767 + 109763747 109763787 41 TCCATGCCGAATACAATCGACAGAAGGACATCTACCTAGCA TCCATGCCAAATACAATCGACAGAAGGACATCTACCTAGCA < 41bp 1 0.447559828188561 1 0.327658116817474 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109763767 chr6:109763755 nonsynonymous SNV 0.996 4 9 hm5C_associated_SNPs_20802 0 0 0 0 2 SMPD2 chr6:109763746 3'AG 109763746 Downstream 10bp
chr6 109763755 109763755 1 + G A COAD 109763767 + 109763747 109763787 41 TCCATGCCGAATACAATCGACAGAAGGACATCTACCTAGCA TCCATGCCAAATACAATCGACAGAAGGACATCTACCTAGCA < 41bp 1 0.447559828188561 1 0.327658116817474 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109763767 chr6:109763755 nonsynonymous SNV 0.996 4 9 hm5C_associated_SNPs_20802 0 0 0 0 2 SMPD2 chr6:109763828 5'GT 109763828 Upstream 74bp
chr4 8284238 8284238 1 + G A COAD 8284228 + 8284208 8284248 41 GCTGACGTGGTGGAGAAGATCGCACCAGCCGTGGTCCACAT GCTGACGTGGTGGAGAAGATCGCACCAGCCATGGTCCACAT < 41bp 1 0.645750693901244 1 0.185940802097321 experiment 0.708498612197512 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8284228 chr4:8284238 nonsynonymous SNV 0.989 5 31 hm5C_associated_SNPs_20803 0 0 0 0 2 HTRA3 chr4:8284164 3'AG 8284164 Downstream 75bp
chr4 8284238 8284238 1 + G A COAD 8284228 + 8284208 8284248 41 GCTGACGTGGTGGAGAAGATCGCACCAGCCGTGGTCCACAT GCTGACGTGGTGGAGAAGATCGCACCAGCCATGGTCCACAT < 41bp 1 0.645750693901244 1 0.185940802097321 experiment 0.708498612197512 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8284228 chr4:8284238 nonsynonymous SNV 0.989 5 31 hm5C_associated_SNPs_20803 0 0 0 0 2 HTRA3 chr4:8284263 5'GT 8284263 Upstream 26bp
chr7 142459652 142459652 1 + C T COAD 142459632 + 142459612 142459652 41 CCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGAGCAC CCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGAGCAT < 41bp 1 0.798346041026821 1 0.796095371246338 experiment 0.403307917946358 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459632 chr7:142459652 synonymous SNV . 0 41 hm5C_associated_SNPs_20806 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 28bp
chr7 142459652 142459652 1 + C T COAD 142459650 + 142459630 142459670 41 TCCAGGTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAG TCCAGGTGAGACTGGGAGAGCATAACATCGAAGTCCTGGAG < 41bp 1 0.737927214565541 1 0.264453291893005 experiment 0.524145570868918 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459650 chr7:142459652 synonymous SNV . 0 23 hm5C_associated_SNPs_20807 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 28bp
chr7 142459652 142459652 1 + C T COAD 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTGAGACTGGGAGAGCATAACATCGAAGTCCTGGAGGGGAA < 41bp 1 0.753702761565061 1 0.0989099442958832 experiment 0.492594476869879 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459652 synonymous SNV . 0 18 hm5C_associated_SNPs_20808 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 28bp
chr7 142459652 142459652 1 + C T COAD 142459658 + 142459638 142459678 41 AGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAATGA AGACTGGGAGAGCATAACATCGAAGTCCTGGAGGGGAATGA < 41bp 1 0.742402255107802 1 0.490651398897171 experiment 0.515195489784395 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459658 chr7:142459652 synonymous SNV . 0 15 hm5C_associated_SNPs_20809 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 28bp
chr7 142459652 142459652 1 + C T COAD 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCATAACATCGAAGTCCTGGAGGGGAATGAGCAGTT < 41bp 1 0.538418094486882 1 0.413948088884354 experiment 0.923163811026236 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459652 synonymous SNV . 0 9 hm5C_associated_SNPs_20810 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 28bp
chr15 29385301 29385301 1 + G T COAD 29385286 + 29385266 29385306 41 GCCCTCCTTCAGTTCCAGGGCCCTGCGAACCAGAAGACCTC GCCCTCCTTCAGTTCCAGGGCCCTGCGAACCAGAATACCTC < 41bp 1 0.0609837501263555 1 0.272961795330048 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APBA2 ENSG00000034053 CDS Human protein_coding chr15:29385286 chr15:29385301 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_20811 0 0 1 0 1 APBA2 chr15:29385278 3'AG 29385278 Downstream 24bp
chr19 7620161 7620161 1 + C T COAD 7620146 + 7620126 7620166 41 CCATCCCAGCATGAGCTCTACGAGAAGGTTTTCTCCAGGCG CCATCCCAGCATGAGCTCTACGAGAAGGTTTTCTCTAGGCG < 41bp 1 0.625596465340382 1 0.41898500919342 experiment 0.748807069319237 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620146 chr19:7620161 synonymous SNV . 0 36 hm5C_associated_SNPs_20813 0 0 1 0 2 PNPLA6 chr19:7620135 3'AG 7620135 Downstream 27bp
chr19 7620161 7620161 1 + C T COAD 7620146 + 7620126 7620166 41 CCATCCCAGCATGAGCTCTACGAGAAGGTTTTCTCCAGGCG CCATCCCAGCATGAGCTCTACGAGAAGGTTTTCTCTAGGCG < 41bp 1 0.625596465340382 1 0.41898500919342 experiment 0.748807069319237 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620146 chr19:7620161 synonymous SNV . 0 36 hm5C_associated_SNPs_20813 0 0 1 0 2 PNPLA6 chr19:7620253 5'GT 7620253 Upstream 93bp
chr19 11114031 11114031 1 + G A COAD 11114029 + 11114009 11114049 41 TTTCTAGGTATGAAGTAGCTCCGAGGTCTGATAGTGAAGAA TTTCTAGGTATGAAGTAGCTCCAAGGTCTGATAGTGAAGAA < 41bp 1 0.161363649126119 1 0.393238991498947 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114029 chr19:11114031 synonymous SNV . 0 23 hm5C_associated_SNPs_20815 0 0 1 0 2 SMARCA4 chr19:11114016 3'AG 11114016 Downstream 16bp
chr19 11114031 11114031 1 + G A COAD 11114029 + 11114009 11114049 41 TTTCTAGGTATGAAGTAGCTCCGAGGTCTGATAGTGAAGAA TTTCTAGGTATGAAGTAGCTCCAAGGTCTGATAGTGAAGAA < 41bp 1 0.161363649126119 1 0.393238991498947 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114029 chr19:11114031 synonymous SNV . 0 23 hm5C_associated_SNPs_20815 0 0 1 0 2 SMARCA4 chr19:11114073 5'GT 11114073 Upstream 43bp
chr19 11114031 11114031 1 + G A COAD 11114036 + 11114016 11114056 41 GTATGAAGTAGCTCCGAGGTCTGATAGTGAAGAAAGTGGCT GTATGAAGTAGCTCCAAGGTCTGATAGTGAAGAAAGTGGCT < 41bp 1 0.132548447778968 1 0.114153295755386 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114036 chr19:11114031 synonymous SNV . 0 16 hm5C_associated_SNPs_20816 0 0 1 0 2 SMARCA4 chr19:11114016 3'AG 11114016 Downstream 16bp
chr19 11114031 11114031 1 + G A COAD 11114036 + 11114016 11114056 41 GTATGAAGTAGCTCCGAGGTCTGATAGTGAAGAAAGTGGCT GTATGAAGTAGCTCCAAGGTCTGATAGTGAAGAAAGTGGCT < 41bp 1 0.132548447778968 1 0.114153295755386 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114036 chr19:11114031 synonymous SNV . 0 16 hm5C_associated_SNPs_20816 0 0 1 0 2 SMARCA4 chr19:11114073 5'GT 11114073 Upstream 43bp
chr1 984306 984306 1 + C A COAD 984297 + 984277 984317 41 GCCGCTCCTTCCTGGCCTTCCCCACTCTCCGCGCCTACCAC GCCGCTCCTTCCTGGCCTTCCCCACTCTCAGCGCCTACCAC < 41bp 1 0.106216134509276 1 0.0437875092029572 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984297 chr1:984306 nonsynonymous SNV 0.107 0 30 hm5C_associated_SNPs_20817 0 0 1 0 1 AGRN chr1:984247 3'AG 984247 Downstream 60bp
chr1 183094636 183094636 1 + G T COAD 183094656 + 183094636 183094676 41 GCTTGTGACCCTGGATTCTACAATCTGCAGAGTGGGCAAGG TCTTGTGACCCTGGATTCTACAATCTGCAGAGTGGGCAAGG < 41bp 1 0.147850609510086 1 0.162043899297714 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183094656 chr1:183094636 nonsynonymous SNV 0.130 0 1 hm5C_associated_SNPs_20818 0 0 1 0 1 LAMC1 chr1:183094685 5'GT 183094685 Upstream 50bp
chr6 131904598 131904598 1 + G A COAD 131904583 + 131904563 131904603 41 GCACACCAGTCGTGGGAGGTCTGACATACAGAGAAGGTCTC GCACACCAGTCGTGGGAGGTCTGACATACAGAGAAAGTCTC < 41bp 1 0.498917519464332 1 0.133423775434494 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARG1 ENSG00000118520 CDS Human protein_coding chr6:131904583 chr6:131904598 nonsynonymous SNV 1.000 5 36 hm5C_associated_SNPs_20819 0 0 1 0 1 ARG1 chr6:131904631 5'GT 131904631 Upstream 34bp
chr6 36569545 36569545 1 + G A COAD 36569553 + 36569533 36569573 41 AAATCACAAGCCGTCCCGATCCTTCTCTAGGTCTCGTAGGT AAATCACAAGCCATCCCGATCCTTCTCTAGGTCTCGTAGGT < 41bp 1 0.018451802608114 1 0.0380212962627411 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36569553 chr6:36569545 synonymous SNV . 0 13 hm5C_associated_SNPs_20820 0 0 1 0 2 SRSF3 chr6:36569485 3'AG 36569485 Downstream 61bp
chr6 36569545 36569545 1 + G A COAD 36569553 + 36569533 36569573 41 AAATCACAAGCCGTCCCGATCCTTCTCTAGGTCTCGTAGGT AAATCACAAGCCATCCCGATCCTTCTCTAGGTCTCGTAGGT < 41bp 1 0.018451802608114 1 0.0380212962627411 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36569553 chr6:36569545 synonymous SNV . 0 13 hm5C_associated_SNPs_20820 0 0 1 0 2 SRSF3 chr6:36569571 5'GT 36569571 Upstream 27bp
chr2 27263669 27263669 1 + C T COAD 27263686 + 27263666 27263706 41 TTTCTTGGACTGGGCACTTGCCCTGATATCCCAGCAGTAGG TTTTTTGGACTGGGCACTTGCCCTGATATCCCAGCAGTAGG < 41bp 1 0.26943631113814 1 0.0518357157707214 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27263686 chr2:27263669 synonymous SNV . 0 4 hm5C_associated_SNPs_20821 0 0 1 0 1 TMEM214 chr2:27263579 3'AG 27263579 Downstream 91bp
chr7 129950655 129950655 1 + C T COAD 129950671 + 129950651 129950691 41 GCTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTG GCTCTGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTG < 41bp 1 0.567868892498094 1 0.0762216746807098 experiment 0.864262215003812 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950671 chr7:129950655 synonymous SNV . 0 5 hm5C_associated_SNPs_20822 0 0 0 0 1 CPA4 chr7:129950627 3'AG 129950627 Downstream 29bp
chr7 129950655 129950655 1 + C T COAD 129950672 + 129950652 129950692 41 CTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTGG CTCTGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTGG < 41bp 1 0.0977425317553244 1 0.0763348937034607 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950672 chr7:129950655 synonymous SNV . 0 4 hm5C_associated_SNPs_20823 0 0 0 0 1 CPA4 chr7:129950627 3'AG 129950627 Downstream 29bp
chr17 37360859 37360859 1 + G A COAD 37360846 + 37360826 37360866 41 CCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCATCA CCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAAATCATCA < 41bp 1 0.29325025674819 1 0.342692792415619 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360846 chr17:37360859 synonymous SNV . 0 34 hm5C_associated_SNPs_20824 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 82bp
chr17 37360859 37360859 1 + G A COAD 37360862 + 37360842 37360882 41 CAGGCCAAGAAGGAGGAGATCATCAAGACTTTATCCAAGGA CAGGCCAAGAAGGAGGAAATCATCAAGACTTTATCCAAGGA < 41bp 1 0.619029867034412 1 0.174684196710587 experiment 0.761940265931175 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360862 chr17:37360859 synonymous SNV . 0 18 hm5C_associated_SNPs_20825 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 82bp
chr17 37360859 37360859 1 + G A COAD 37360876 + 37360856 37360896 41 GGAGATCATCAAGACTTTATCCAAGGAGGAAGAGACCAAGA GGAAATCATCAAGACTTTATCCAAGGAGGAAGAGACCAAGA < 41bp 1 0.497510270092984 1 0.817286252975464 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360876 chr17:37360859 synonymous SNV . 0 4 hm5C_associated_SNPs_20826 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 82bp
chr16 2011256 2011256 1 + G C COAD 2011268 + 2011248 2011288 41 CATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGG CATCATGTCCATGTATGAAGCCGAAATGCAGTGGAAGAGGG < 41bp 1 0.554927005318693 1 0.36777126789093 experiment 0.890145989362614 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011268 chr16:2011256 nonsynonymous SNV 0.060 4 9 hm5C_associated_SNPs_20827 0 0 1 0 1 NDUFB10 chr16:2011292 5'GT 2011292 Upstream 37bp
chr16 2011256 2011256 1 + G C COAD 2011269 + 2011249 2011289 41 ATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGGA ATCATGTCCATGTATGAAGCCGAAATGCAGTGGAAGAGGGA < 41bp 1 0.538543669519361 1 0.470113694667816 experiment 0.922912660961277 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011269 chr16:2011256 nonsynonymous SNV 0.060 4 8 hm5C_associated_SNPs_20828 0 0 1 0 1 NDUFB10 chr16:2011292 5'GT 2011292 Upstream 37bp
chr16 2011256 2011256 1 + G C COAD 2011276 + 2011256 2011296 41 GCATGTATGAAGCCGAAATGCAGTGGAAGAGGGACTAGTAC CCATGTATGAAGCCGAAATGCAGTGGAAGAGGGACTAGTAC < 41bp 1 0.689180479157338 1 0.590249300003052 experiment 0.621639041685323 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011276 chr16:2011256 nonsynonymous SNV 0.060 4 1 hm5C_associated_SNPs_20829 0 0 1 0 1 NDUFB10 chr16:2011292 5'GT 2011292 Upstream 37bp
chr10 60580132 60580132 1 + G A COAD 60580149 + 60580129 60580169 41 ATCGATCTTCAGACATTCCTCACTCTCACAGATCAGGATCT ATCAATCTTCAGACATTCCTCACTCTCACAGATCAGGATCT < 41bp 1 0.0843026967202713 1 0.0954337120056152 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60580149 chr10:60580132 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_20830 0 0 1 0 2 BICC1 chr10:60580129 3'AG 60580129 Downstream 4bp
chr10 60580132 60580132 1 + G A COAD 60580149 + 60580129 60580169 41 ATCGATCTTCAGACATTCCTCACTCTCACAGATCAGGATCT ATCAATCTTCAGACATTCCTCACTCTCACAGATCAGGATCT < 41bp 1 0.0843026967202713 1 0.0954337120056152 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60580149 chr10:60580132 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_20830 0 0 1 0 2 BICC1 chr10:60580228 5'GT 60580228 Upstream 97bp
chr9 138678124 138678124 1 + G T COAD 138678113 + 138678093 138678133 41 GGGGCCCTGGGGCTCCCGCGCTGGCACCGGAGGCAGCTCCC GGGGCCCTGGGGCTCCCGCGCTGGCACCGGATGCAGCTCCC < 41bp 1 0.650342512714267 1 0.145150691270828 experiment 0.699314974571466 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNT1 ENSG00000107147 CDS Human protein_coding chr9:138678113 chr9:138678124 nonsynonymous SNV 0.079 0 32 hm5C_associated_SNPs_20833 0 0 0 0 1 KCNT1 chr9:138678043 3'AG 138678043 Downstream 82bp
chr5 61669589 61669589 1 + T C COAD 61669583 + 61669563 61669603 41 ATAATGCACCATCCACCAAACCAGATTGATGACTTAGAGAC ATAATGCACCATCCACCAAACCAGATCGATGACTTAGAGAC < 41bp 1 0.61615523296855 1 0.237308740615845 experiment 0.7676895340629 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF2A ENSG00000068796 CDS Human protein_coding chr5:61669583 chr5:61669589 synonymous SNV . 0 27 hm5C_associated_SNPs_20834 0 0 1 0 1 KIF2A chr5:61669664 5'GT 61669664 Upstream 76bp
chr12 52636889 52636889 1 + C A COAD 52636873 + 52636853 52636893 41 AATGAGATTTCAGAGATGAACCGGGCCATCCAGAGGCTGCA AATGAGATTTCAGAGATGAACCGGGCCATCCAGAGGATGCA < 41bp 1 0.347024362155308 1 0.223008841276169 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636873 chr12:52636889 nonsynonymous SNV 0.999 3 37 hm5C_associated_SNPs_20835 0 0 1 0 2 KRT7 chr12:52636796 3'AG 52636796 Downstream 94bp
chr12 52636889 52636889 1 + C A COAD 52636873 + 52636853 52636893 41 AATGAGATTTCAGAGATGAACCGGGCCATCCAGAGGCTGCA AATGAGATTTCAGAGATGAACCGGGCCATCCAGAGGATGCA < 41bp 1 0.347024362155308 1 0.223008841276169 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636873 chr12:52636889 nonsynonymous SNV 0.999 3 37 hm5C_associated_SNPs_20835 0 0 1 0 2 KRT7 chr12:52636921 5'GT 52636921 Upstream 33bp
chr12 52636889 52636889 1 + C A COAD 52636909 + 52636889 52636929 41 CTGCAGGCTGAGATCGACAACATCAAGAACCAGGTGGGACA ATGCAGGCTGAGATCGACAACATCAAGAACCAGGTGGGACA < 41bp 1 0.381510602763357 1 0.0664180815219879 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636909 chr12:52636889 nonsynonymous SNV 0.999 3 1 hm5C_associated_SNPs_20836 0 0 1 0 2 KRT7 chr12:52636796 3'AG 52636796 Downstream 94bp
chr12 52636889 52636889 1 + C A COAD 52636909 + 52636889 52636929 41 CTGCAGGCTGAGATCGACAACATCAAGAACCAGGTGGGACA ATGCAGGCTGAGATCGACAACATCAAGAACCAGGTGGGACA < 41bp 1 0.381510602763357 1 0.0664180815219879 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636909 chr12:52636889 nonsynonymous SNV 0.999 3 1 hm5C_associated_SNPs_20836 0 0 1 0 2 KRT7 chr12:52636921 5'GT 52636921 Upstream 33bp
chr3 62189599 62189599 1 + C T COAD 62189585 + 62189565 62189605 41 AGCCTATGTCCCGCGGGGACCGATTTTCTGAAGACAGCAGA AGCCTATGTCCCGCGGGGACCGATTTTCTGAAGATAGCAGA < 41bp 1 0.103471706007246 1 0.198648363351822 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:62189585 chr3:62189599 synonymous SNV . 0 35 hm5C_associated_SNPs_20839 0 0 0 0 1 PTPRG chr3:62189624 5'GT 62189624 Upstream 26bp
chr11 64137808 64137808 1 + G A COAD 64137798 + 64137778 64137818 41 AAAATCCGCGAGGGGCGCTTCTCCCTTGACGGGGAGGCCTG AAAATCCGCGAGGGGCGCTTCTCCCTTGACAGGGAGGCCTG < 41bp 1 0.513819939744828 1 0.632405996322632 experiment 0.972360120510345 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137798 chr11:64137808 nonsynonymous SNV 0.997 3 31 hm5C_associated_SNPs_20840 0 0 0 0 2 RPS6KA4 chr11:64137760 3'AG 64137760 Downstream 49bp
chr11 64137808 64137808 1 + G A COAD 64137798 + 64137778 64137818 41 AAAATCCGCGAGGGGCGCTTCTCCCTTGACGGGGAGGCCTG AAAATCCGCGAGGGGCGCTTCTCCCTTGACAGGGAGGCCTG < 41bp 1 0.513819939744828 1 0.632405996322632 experiment 0.972360120510345 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137798 chr11:64137808 nonsynonymous SNV 0.997 3 31 hm5C_associated_SNPs_20840 0 0 0 0 2 RPS6KA4 chr11:64137856 5'GT 64137856 Upstream 49bp
chr19 13930222 13930222 1 + T C COAD 13930238 + 13930218 13930258 41 CCCATGCACACCTGTGCCCGCTACCTGTTCACCGCACTGCT CCCACGCACACCTGTGCCCGCTACCTGTTCACCGCACTGCT < 41bp 1 0.133125980932731 1 0.0529041588306427 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13930238 chr19:13930222 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_20841 0 0 1 0 2 ZSWIM4 chr19:13930171 3'AG 13930171 Downstream 52bp
chr19 13930222 13930222 1 + T C COAD 13930238 + 13930218 13930258 41 CCCATGCACACCTGTGCCCGCTACCTGTTCACCGCACTGCT CCCACGCACACCTGTGCCCGCTACCTGTTCACCGCACTGCT < 41bp 1 0.133125980932731 1 0.0529041588306427 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13930238 chr19:13930222 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_20841 0 0 1 0 2 ZSWIM4 chr19:13930306 5'GT 13930306 Upstream 85bp
chr20 23350274 23350274 1 + G A COAD 23350279 + 23350259 23350299 41 TTCACCCAGCTCAACGCCCTCCAGCGCCACCGCCGCATCCA TTCACCCAGCTCAACACCCTCCAGCGCCACCGCCGCATCCA < 41bp 1 0.460787591352086 1 0.414491176605225 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350279 chr20:23350274 nonsynonymous SNV 0.977 3 16 hm5C_associated_SNPs_20842 0 0 0 0 1 GZF1 chr20:23350221 3'AG 23350221 Downstream 54bp
chr19 48832635 48832635 1 + A G COAD 48832653 + 48832633 48832673 41 TCATGGTGCTCTCCCTCATTCTCTGCTGTCTCTCCTTCATC TCGTGGTGCTCTCCCTCATTCTCTGCTGTCTCTCCTTCATC < 41bp 1 0.5051507559903 1 0.0742425620555878 experiment 0.9896984880194 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EMP3 ENSG00000142227 CDS Human protein_coding chr19:48832653 chr19:48832635 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_20843 0 0 1 0 1 EMP3 chr19:48832609 3'AG 48832609 Downstream 27bp
chr1 154215749 154215749 1 + G A COAD 154215745 + 154215725 154215765 41 TGTGTCTTCAGTGCCTCTGCCTGCGGAGAATGTGACAATCA TGTGTCTTCAGTGCCTCTGCCTGCAGAGAATGTGACAATCA < 41bp 1 0.760837840684373 1 0.767014622688293 experiment 0.478324318631253 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154215745 chr1:154215749 synonymous SNV . 0 25 hm5C_associated_SNPs_20844 0 0 1 0 1 UBAP2L chr1:154215693 3'AG 154215693 Downstream 57bp
chr10 12162803 12162803 1 + G A COAD 12162801 + 12162781 12162821 41 TATAGCTCCGTCTGGTGGGCCGGCCCCCTTTGCCAGTACCC TATAGCTCCGTCTGGTGGGCCGACCCCCTTTGCCAGTACCC < 41bp 1 0.09991564698927 1 0.667125582695007 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12162801 chr10:12162803 synonymous SNV . 0 23 hm5C_associated_SNPs_20845 0 0 1 0 1 DHTKD1 chr10:12162786 3'AG 12162786 Downstream 18bp
chr16 12618656 12618656 1 + G T COAD 12618659 + 12618639 12618679 41 CCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC CCCCGAGTTCGCTGCCATCCCCAAGAAGGAGACCCTCATCC < 41bp 1 0.224746656337702 1 0.467459440231323 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12618659 chr16:12618656 nonsynonymous SNV 0.573 0 18 hm5C_associated_SNPs_20847 0 0 0 0 2 SNX29 chr16:12618559 3'AG 12618559 Downstream 98bp
chr16 12618656 12618656 1 + G T COAD 12618659 + 12618639 12618679 41 CCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC CCCCGAGTTCGCTGCCATCCCCAAGAAGGAGACCCTCATCC < 41bp 1 0.224746656337702 1 0.467459440231323 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12618659 chr16:12618656 nonsynonymous SNV 0.573 0 18 hm5C_associated_SNPs_20847 0 0 0 0 2 SNX29 chr16:12618698 5'GT 12618698 Upstream 43bp
chr19 7682688 7682688 1 + G A COAD 7682691 + 7682671 7682711 41 ATCCTCTTTCGCGACTCGAGCTGCCAGTTCCGGGCGCTCTA ATCCTCTTTCGCGACTCAAGCTGCCAGTTCCGGGCGCTCTA < 41bp 1 0.318858908801586 1 0.152687251567841 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7682691 chr19:7682688 synonymous SNV . 0 18 hm5C_associated_SNPs_20853 0 0 0 0 1 CAMSAP3 chr19:7682638 3'AG 7682638 Downstream 51bp
chr19 41711920 41711920 1 + C T COAD 41711910 + 41711890 41711930 41 TCCATCCTGCATGACCCCAACATCTTCAAGCACCCAGAAGA TCCATCCTGCATGACCCCAACATCTTCAAGTACCCAGAAGA < 41bp 1 0.0811595622068732 1 0.126604735851288 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41711910 chr19:41711920 nonsynonymous SNV 0.014 0 31 hm5C_associated_SNPs_20854 0 0 0 0 2 CYP2S1 chr19:41711863 3'AG 41711863 Downstream 58bp
chr19 41711920 41711920 1 + C T COAD 41711910 + 41711890 41711930 41 TCCATCCTGCATGACCCCAACATCTTCAAGCACCCAGAAGA TCCATCCTGCATGACCCCAACATCTTCAAGTACCCAGAAGA < 41bp 1 0.0811595622068732 1 0.126604735851288 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41711910 chr19:41711920 nonsynonymous SNV 0.014 0 31 hm5C_associated_SNPs_20854 0 0 0 0 2 CYP2S1 chr19:41712004 5'GT 41712004 Upstream 85bp
chr16 675981 675981 1 + G A COAD 675974 + 675954 675994 41 AGCGGCAGGTCCCGACGGAGCAGGCCCGCGCGTACGCAGAG AGCGGCAGGTCCCGACGGAGCAGGCCCACGCGTACGCAGAG < 41bp 1 0.53934188047409 1 0.836148977279663 experiment 0.92131623905182 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675974 chr16:675981 nonsynonymous SNV 0.007 3 28 hm5C_associated_SNPs_20855 0 0 0 0 2 RAB40C chr16:675899 3'AG 675899 Downstream 83bp
chr16 675981 675981 1 + G A COAD 675974 + 675954 675994 41 AGCGGCAGGTCCCGACGGAGCAGGCCCGCGCGTACGCAGAG AGCGGCAGGTCCCGACGGAGCAGGCCCACGCGTACGCAGAG < 41bp 1 0.53934188047409 1 0.836148977279663 experiment 0.92131623905182 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675974 chr16:675981 nonsynonymous SNV 0.007 3 28 hm5C_associated_SNPs_20855 0 0 0 0 2 RAB40C chr16:675956 3'AG 675956 Downstream 26bp
chr21 46931094 46931094 1 + C T COAD 46931104 + 46931084 46931124 41 GCCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC GCCCGGGGCATGCATCTTCTCCTTTGACGGCAAGGACGTCC < 41bp 1 0.0570109599313957 1 0.136313140392303 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931104 chr21:46931094 nonsynonymous SNV 0.451 4 11 hm5C_associated_SNPs_20857 0 0 1 0 2 COL18A1 chr21:46931025 3'AG 46931025 Downstream 70bp
chr21 46931094 46931094 1 + C T COAD 46931104 + 46931084 46931124 41 GCCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC GCCCGGGGCATGCATCTTCTCCTTTGACGGCAAGGACGTCC < 41bp 1 0.0570109599313957 1 0.136313140392303 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931104 chr21:46931094 nonsynonymous SNV 0.451 4 11 hm5C_associated_SNPs_20857 0 0 1 0 2 COL18A1 chr21:46931140 5'GT 46931140 Upstream 47bp
chr21 46931094 46931094 1 + C T COAD 46931105 + 46931085 46931125 41 CCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT CCCGGGGCATGCATCTTCTCCTTTGACGGCAAGGACGTCCT < 41bp 1 0.0718554087788708 1 0.0528660118579865 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931105 chr21:46931094 nonsynonymous SNV 0.451 4 10 hm5C_associated_SNPs_20858 0 0 1 0 2 COL18A1 chr21:46931025 3'AG 46931025 Downstream 70bp
chr21 46931094 46931094 1 + C T COAD 46931105 + 46931085 46931125 41 CCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT CCCGGGGCATGCATCTTCTCCTTTGACGGCAAGGACGTCCT < 41bp 1 0.0718554087788708 1 0.0528660118579865 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931105 chr21:46931094 nonsynonymous SNV 0.451 4 10 hm5C_associated_SNPs_20858 0 0 1 0 2 COL18A1 chr21:46931140 5'GT 46931140 Upstream 47bp
chr19 32973074 32973074 1 + C T COAD 32973083 + 32973063 32973103 41 AACCTGCCTCCCTACGTGGCCTACTTCACCAGAGTGTTCCA AACCTGCCTCCTTACGTGGCCTACTTCACCAGAGTGTTCCA < 41bp 1 0.187783901293585 1 0.138640701770782 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DPY19L3 ENSG00000178904 CDS Human protein_coding chr19:32973083 chr19:32973074 synonymous SNV . 0 12 hm5C_associated_SNPs_20860 0 0 1 0 1 DPY19L3 chr19:32972985 3'AG 32972985 Downstream 90bp
chr7 45688317 45688317 1 + G A COAD 45688321 + 45688301 45688341 41 GGACTGCTACTACTGCGTGTCGGGCCTCACCCAGCCCAAGA GGACTGCTACTACTGCATGTCGGGCCTCACCCAGCCCAAGA < 41bp 1 0.505019283456155 1 0.785029768943787 experiment 0.98996143308769 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45688321 chr7:45688317 nonsynonymous SNV 0.625 5 17 hm5C_associated_SNPs_20861 0 0 1 0 2 ADCY1 chr7:45688269 3'AG 45688269 Downstream 49bp
chr7 45688317 45688317 1 + G A COAD 45688321 + 45688301 45688341 41 GGACTGCTACTACTGCGTGTCGGGCCTCACCCAGCCCAAGA GGACTGCTACTACTGCATGTCGGGCCTCACCCAGCCCAAGA < 41bp 1 0.505019283456155 1 0.785029768943787 experiment 0.98996143308769 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45688321 chr7:45688317 nonsynonymous SNV 0.625 5 17 hm5C_associated_SNPs_20861 0 0 1 0 2 ADCY1 chr7:45688396 5'GT 45688396 Upstream 80bp
chr17 48595059 48595059 1 + G A COAD 48595045 + 48595025 48595065 41 TTAAGAGAATTGCACTTGCTCGAGGGAACACCCAGGTTTGT TTAAGAGAATTGCACTTGCTCGAGGGAACACCCAAGTTTGT < 41bp 1 0.71616924159857 1 0.782077193260193 experiment 0.567661516802859 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MYCBPAP ENSG00000136449 CDS Human protein_coding chr17:48595045 chr17:48595059 synonymous SNV . 0 35 hm5C_associated_SNPs_20862 0 0 0 0 1 MYCBPAP chr17:48595059 5'GT 48595059 Upstream 1bp
chr14 64596886 64596886 1 + G T COAD 64596874 + 64596854 64596894 41 TGTTGCAAGGCATGGTGGAACTGGTGAAGATTGGGAAGGAA TGTTGCAAGGCATGGTGGAACTGGTGAAGATTTGGAAGGAA < 41bp 1 0.259581581517001 1 0.352611154317856 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64596874 chr14:64596886 nonsynonymous SNV 0.912 4 33 hm5C_associated_SNPs_20864 0 0 1 0 1 SYNE2 chr14:64596966 5'GT 64596966 Upstream 81bp
chr16 30773899 30773899 1 + C T COAD 30773908 + 30773888 30773928 41 CGCGCCGCCGGCGACGGGGGCTCAGGGCCCCCGGAAAAGAA CGCGCCGCCGGTGACGGGGGCTCAGGGCCCCCGGAAAAGAA < 41bp 1 0.347585894933465 1 0.450242012739182 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30773908 chr16:30773899 synonymous SNV . 0 12 hm5C_associated_SNPs_20865 0 0 1 0 1 RNF40 chr16:30773998 5'GT 30773998 Upstream 100bp
chr16 30773899 30773899 1 + C T COAD 30773915 + 30773895 30773935 41 CCGGCGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCTGAGT CCGGTGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCTGAGT < 41bp 1 0.107070019014939 1 0.299264460802078 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30773915 chr16:30773899 synonymous SNV . 0 5 hm5C_associated_SNPs_20866 0 0 1 0 1 RNF40 chr16:30773998 5'GT 30773998 Upstream 100bp
chr16 30773899 30773899 1 + C T COAD 30773916 + 30773896 30773936 41 CGGCGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCTGAGTC CGGTGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCTGAGTC < 41bp 1 0.356197985339558 1 0.479425042867661 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30773916 chr16:30773899 synonymous SNV . 0 4 hm5C_associated_SNPs_20867 0 0 1 0 1 RNF40 chr16:30773998 5'GT 30773998 Upstream 100bp
chr16 30773899 30773899 1 + C T COAD 30773917 + 30773897 30773937 41 GGCGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCTGAGTCG GGTGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCTGAGTCG < 41bp 1 0.601164452751593 1 0.736515164375305 experiment 0.797671094496814 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30773917 chr16:30773899 synonymous SNV . 0 3 hm5C_associated_SNPs_20868 0 0 1 0 1 RNF40 chr16:30773998 5'GT 30773998 Upstream 100bp
chr16 30773899 30773899 1 + C T COAD 30773918 + 30773898 30773938 41 GCGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCTGAGTCGT GTGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCTGAGTCGT < 41bp 1 0.645449042893932 1 0.666687071323395 experiment 0.709101914212135 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30773918 chr16:30773899 synonymous SNV . 0 2 hm5C_associated_SNPs_20869 0 0 1 0 1 RNF40 chr16:30773998 5'GT 30773998 Upstream 100bp
chr1 109803855 109803855 1 + C T COAD 109803866 + 109803846 109803886 41 CGCGGCCTGCGCCAGCGTTTCCACTTCACCCTGGCCCTCTC CGCGGCCTGTGCCAGCGTTTCCACTTCACCCTGGCCCTCTC < 41bp 1 0.150991289460705 1 0.219131022691727 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109803866 chr1:109803855 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_20870 0 0 1 0 1 CELSR2 chr1:109803886 5'GT 109803886 Upstream 32bp
chr16 2489444 2489444 1 + G A COAD 2489428 + 2489408 2489448 41 GGATGTCTGACCAGCTCCTACCTCCTCTGGGAAAGCGACAG GGATGTCTGACCAGCTCCTACCTCCTCTGGGAAAGCAACAG < 41bp 1 0.0255866082456101 1 0.0690689086914062 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCNF ENSG00000162063 CDS Human protein_coding chr16:2489428 chr16:2489444 nonsynonymous SNV 0.787 0 37 hm5C_associated_SNPs_20871 0 0 1 0 2 CCNF chr16:2489354 3'AG 2489354 Downstream 91bp
chr16 2489444 2489444 1 + G A COAD 2489428 + 2489408 2489448 41 GGATGTCTGACCAGCTCCTACCTCCTCTGGGAAAGCGACAG GGATGTCTGACCAGCTCCTACCTCCTCTGGGAAAGCAACAG < 41bp 1 0.0255866082456101 1 0.0690689086914062 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCNF ENSG00000162063 CDS Human protein_coding chr16:2489428 chr16:2489444 nonsynonymous SNV 0.787 0 37 hm5C_associated_SNPs_20871 0 0 1 0 2 CCNF chr16:2489458 5'GT 2489458 Upstream 15bp
chr17 80426678 80426678 1 + T G COAD 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGTGCTGGTAGTGTCGGTGTGTCCTCAATCTTTGC < 41bp 1 0.58009520039915 1 0.898734629154205 experiment 0.8398095992017 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426678 synonymous SNV . 0 22 hm5C_associated_SNPs_20875 0 0 1 0 2 NARF chr17:80426640 3'AG 80426640 Downstream 39bp
chr17 80426678 80426678 1 + T G COAD 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGTGCTGGTAGTGTCGGTGTGTCCTCAATCTTTGC < 41bp 1 0.58009520039915 1 0.898734629154205 experiment 0.8398095992017 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426678 synonymous SNV . 0 22 hm5C_associated_SNPs_20875 0 0 1 0 2 NARF chr17:80426772 5'GT 80426772 Upstream 95bp
chr16 85698705 85698705 1 + C T COAD 85698720 + 85698700 85698740 41 CTCTCCGAGGGACAGTCCTGCCGTCTCCCTGAGTGGTAAGG CTCTCTGAGGGACAGTCCTGCCGTCTCCCTGAGTGGTAAGG < 41bp 1 0.0251465558898153 1 0.0853056609630585 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85698720 chr16:85698705 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_20878 0 0 1 0 2 GSE1 chr16:85698621 3'AG 85698621 Downstream 85bp
chr16 85698705 85698705 1 + C T COAD 85698720 + 85698700 85698740 41 CTCTCCGAGGGACAGTCCTGCCGTCTCCCTGAGTGGTAAGG CTCTCTGAGGGACAGTCCTGCCGTCTCCCTGAGTGGTAAGG < 41bp 1 0.0251465558898153 1 0.0853056609630585 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85698720 chr16:85698705 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_20878 0 0 1 0 2 GSE1 chr16:85698734 5'GT 85698734 Upstream 30bp
chr16 85698705 85698705 1 + C T COAD 85698721 + 85698701 85698741 41 TCTCCGAGGGACAGTCCTGCCGTCTCCCTGAGTGGTAAGGG TCTCTGAGGGACAGTCCTGCCGTCTCCCTGAGTGGTAAGGG < 41bp 1 0.134936028589066 1 0.124894857406616 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85698721 chr16:85698705 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_20879 0 0 1 0 2 GSE1 chr16:85698621 3'AG 85698621 Downstream 85bp
chr16 85698705 85698705 1 + C T COAD 85698721 + 85698701 85698741 41 TCTCCGAGGGACAGTCCTGCCGTCTCCCTGAGTGGTAAGGG TCTCTGAGGGACAGTCCTGCCGTCTCCCTGAGTGGTAAGGG < 41bp 1 0.134936028589066 1 0.124894857406616 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85698721 chr16:85698705 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_20879 0 0 1 0 2 GSE1 chr16:85698734 5'GT 85698734 Upstream 30bp
chr12 118462787 118462787 1 + C T COAD 118462801 + 118462781 118462821 41 GTTCCCCGCCTGGAACATGTCGTGGAAGAAGAGAAGTGAGT GTTCCCTGCCTGGAACATGTCGTGGAAGAAGAGAAGTGAGT < 41bp 1 0.70066437277428 1 0.349407494068146 experiment 0.59867125445144 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RFC5 ENSG00000111445 CDS Human protein_coding chr12:118462801 chr12:118462787 nonsynonymous SNV 0.986 3 7 hm5C_associated_SNPs_20883 0 0 1 0 1 RFC5 chr12:118462815 5'GT 118462815 Upstream 29bp
chr19 45261569 45261569 1 + G A COAD 45261574 + 45261554 45261594 41 TCAGCGTCCGGCCGCGGGCTCCTCCCGCTGGTGCGCACGCT TCAGCGTCCGGCCGCAGGCTCCTCCCGCTGGTGCGCACGCT < 41bp 1 0.0499324209612214 1 0.104048013687134 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCL3 ENSG00000069399 CDS Human protein_coding chr19:45261574 chr19:45261569 nonsynonymous SNV 0.999 3 16 hm5C_associated_SNPs_20887 0 0 0 0 1 BCL3 chr19:45261503 3'AG 45261503 Downstream 67bp
chr3 184104656 184104656 1 + G A COAD 184104655 + 184104635 184104675 41 ACGAACGGTGATCTGTGACCCGGTGGTGTGCCCACCGCCCA ACGAACGGTGATCTGTGACCCAGTGGTGTGCCCACCGCCCA < 41bp 1 0.697117293826324 1 0.712969720363617 experiment 0.605765412347351 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CHRD ENSG00000090539 CDS Human protein_coding chr3:184104655 chr3:184104656 synonymous SNV . 0 22 hm5C_associated_SNPs_20889 0 0 1 0 2 CHRD chr3:184104633 3'AG 184104633 Downstream 24bp
chr3 184104656 184104656 1 + G A COAD 184104655 + 184104635 184104675 41 ACGAACGGTGATCTGTGACCCGGTGGTGTGCCCACCGCCCA ACGAACGGTGATCTGTGACCCAGTGGTGTGCCCACCGCCCA < 41bp 1 0.697117293826324 1 0.712969720363617 experiment 0.605765412347351 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CHRD ENSG00000090539 CDS Human protein_coding chr3:184104655 chr3:184104656 synonymous SNV . 0 22 hm5C_associated_SNPs_20889 0 0 1 0 2 CHRD chr3:184104726 5'GT 184104726 Upstream 71bp
chr1 55072919 55072919 1 + C T COAD 55072914 + 55072894 55072934 41 GGACTTCGTGATCCTGGCCTCGAGGCGGAAGCCTTGTGACA GGACTTCGTGATCCTGGCCTCGAGGTGGAAGCCTTGTGACA < 41bp 1 0.764516700105838 1 0.90405535697937 experiment 0.470966599788323 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55072914 chr1:55072919 nonsynonymous SNV 0.959 5 26 hm5C_associated_SNPs_20890 0 0 0 0 1 ACOT11 chr1:55072938 5'GT 55072938 Upstream 20bp
chr17 47119661 47119661 1 + C T COAD 47119678 + 47119658 47119698 41 CATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGA CATTGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGA < 41bp 1 0.13582959114391 1 0.211308389902115 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119678 chr17:47119661 synonymous SNV . 0 4 hm5C_associated_SNPs_20891 0 0 1 0 1 IGF2BP1 chr17:47119604 3'AG 47119604 Downstream 58bp
chr17 47119661 47119661 1 + C T COAD 47119679 + 47119659 47119699 41 ATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGAA ATTGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGAA < 41bp 1 0.378514612540593 1 0.231577962636948 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119679 chr17:47119661 synonymous SNV . 0 3 hm5C_associated_SNPs_20892 0 0 1 0 1 IGF2BP1 chr17:47119604 3'AG 47119604 Downstream 58bp
chr19 50338288 50338288 1 + G A COAD 50338268 + 50338248 50338288 41 CTGCGTGCACTTCCCCCACACGGCGCCCTGTGAGGTGCGCG CTGCGTGCACTTCCCCCACACGGCGCCCTGTGAGGTGCGCA < 41bp 1 0.581898192509978 1 0.827581584453583 experiment 0.836203614980044 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50338268 chr19:50338288 nonsynonymous SNV 0.817 4 41 hm5C_associated_SNPs_20893 0 0 0 0 1 MED25 chr19:50338243 3'AG 50338243 Downstream 46bp
chr2 220350109 220350109 1 + C T COAD 220350113 + 220350093 220350133 41 CCGCTGGGGCTTCTCTCGGCCGCGGAAGGACAAGGGGTTAT CCGCTGGGGCTTCTCTTGGCCGCGGAAGGACAAGGGGTTAT < 41bp 1 0.503198628624069 1 0.655869483947754 experiment 0.993602742751862 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220350113 chr2:220350109 nonsynonymous SNV 0.865 1 17 hm5C_associated_SNPs_20897 0 0 0 0 2 SPEG chr2:220350068 3'AG 220350068 Downstream 42bp
chr2 220350109 220350109 1 + C T COAD 220350113 + 220350093 220350133 41 CCGCTGGGGCTTCTCTCGGCCGCGGAAGGACAAGGGGTTAT CCGCTGGGGCTTCTCTTGGCCGCGGAAGGACAAGGGGTTAT < 41bp 1 0.503198628624069 1 0.655869483947754 experiment 0.993602742751862 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220350113 chr2:220350109 nonsynonymous SNV 0.865 1 17 hm5C_associated_SNPs_20897 0 0 0 0 2 SPEG chr2:220350199 5'GT 220350199 Upstream 91bp
chr17 67515570 67515570 1 + G T COAD 67515562 + 67515542 67515582 41 CTGTCACCTTTTATGGCGCACTGTTTCGGGAGGTAGGTGAC CTGTCACCTTTTATGGCGCACTGTTTCGTGAGGTAGGTGAC < 41bp 1 0.158599819002575 1 0.0423873662948608 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K6 ENSG00000108984 CDS Human protein_coding chr17:67515562 chr17:67515570 synonymous SNV . 0 29 hm5C_associated_SNPs_20900 0 0 1 0 1 MAP2K6 chr17:67515573 5'GT 67515573 Upstream 4bp
chr1 6505931 6505931 1 + C T COAD 6505928 + 6505908 6505948 41 GCCTCCTGTAGGACCACAGGCAGCTGACATCTACATGCAGA GCCTCCTGTAGGACCACAGGCAGTTGACATCTACATGCAGA < 41bp 1 0.170776019491227 1 0.457861661911011 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ESPN ENSG00000187017 CDS Human protein_coding chr1:6505928 chr1:6505931 nonsynonymous SNV 0.132 2 24 hm5C_associated_SNPs_20901 0 0 1 0 1 ESPN chr1:6505995 5'GT 6505995 Upstream 65bp
chr1 32620270 32620270 1 + G A COAD 32620253 + 32620233 32620273 41 TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAG TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACAAAG < 41bp 1 0.209994352105163 1 0.105906367301941 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620253 chr1:32620270 nonsynonymous SNV 0.999 4 38 hm5C_associated_SNPs_20902 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 82bp
chr1 32620270 32620270 1 + G A COAD 32620253 + 32620233 32620273 41 TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAG TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACAAAG < 41bp 1 0.209994352105163 1 0.105906367301941 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620253 chr1:32620270 nonsynonymous SNV 0.999 4 38 hm5C_associated_SNPs_20902 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 53bp
chr1 32620270 32620270 1 + G A COAD 32620254 + 32620234 32620274 41 ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAGA ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACAAAGA < 41bp 1 0.251891752736365 1 0.352325081825256 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620254 chr1:32620270 nonsynonymous SNV 0.999 4 37 hm5C_associated_SNPs_20903 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 82bp
chr1 32620270 32620270 1 + G A COAD 32620254 + 32620234 32620274 41 ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAGA ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACAAAGA < 41bp 1 0.251891752736365 1 0.352325081825256 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620254 chr1:32620270 nonsynonymous SNV 0.999 4 37 hm5C_associated_SNPs_20903 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 53bp
chr13 77661742 77661742 1 - G A COAD 77661728 - 77661708 77661748 41 TAATGTCATCCAAACCACTTCTCTCCATGATATTCTGTGGC TAATGTTATCCAAACCACTTCTCTCCATGATATTCTGTGGC < 41bp 1 0.0278919719452489 1 0.456948816776276 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MYCBP2 ENSG00000005810 CDS Human protein_coding chr13:77661728 chr13:77661742 synonymous SNV . 0 7 hm5C_associated_SNPs_20904 0 0 1 0 1 MYCBP2 chr13:77661768 3'AG 77661768 Downstream 27bp
chr2 232035370 232035370 1 + G A COAD 232035362 + 232035342 232035382 41 ACCTGTGGCAGCACATGGCCCAAAAATCGAGGAGGAGGAAC ACCTGTGGCAGCACATGGCCCAAAAATCAAGGAGGAGGAAC < 41bp 1 0.619843229918959 1 0.0628629922866821 experiment 0.760313540162082 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMD1 ENSG00000173692 CDS Human protein_coding chr2:232035362 chr2:232035370 nonsynonymous SNV 0.984 1 29 hm5C_associated_SNPs_20905 0 0 1 0 2 PSMD1 chr2:232035280 3'AG 232035280 Downstream 91bp
chr2 232035370 232035370 1 + G A COAD 232035362 + 232035342 232035382 41 ACCTGTGGCAGCACATGGCCCAAAAATCGAGGAGGAGGAAC ACCTGTGGCAGCACATGGCCCAAAAATCAAGGAGGAGGAAC < 41bp 1 0.619843229918959 1 0.0628629922866821 experiment 0.760313540162082 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMD1 ENSG00000173692 CDS Human protein_coding chr2:232035362 chr2:232035370 nonsynonymous SNV 0.984 1 29 hm5C_associated_SNPs_20905 0 0 1 0 2 PSMD1 chr2:232035435 5'GT 232035435 Upstream 66bp
chr10 122625220 122625220 1 + T C COAD 122625218 + 122625198 122625238 41 AACTTTACGTGTTCGAAGATCTTATAATAACATTTTTACCA AACTTTACGTGTTCGAAGATCTCATAATAACATTTTTACCA < 41bp 1 0.193188333269041 1 0.222042292356491 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122625218 chr10:122625220 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_20908 0 0 1 0 2 WDR11 chr10:122625142 3'AG 122625142 Downstream 79bp
chr10 122625220 122625220 1 + T C COAD 122625218 + 122625198 122625238 41 AACTTTACGTGTTCGAAGATCTTATAATAACATTTTTACCA AACTTTACGTGTTCGAAGATCTCATAATAACATTTTTACCA < 41bp 1 0.193188333269041 1 0.222042292356491 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122625218 chr10:122625220 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_20908 0 0 1 0 2 WDR11 chr10:122625256 5'GT 122625256 Upstream 37bp
chr10 122625220 122625220 1 + T C COAD 122625228 + 122625208 122625248 41 GTTCGAAGATCTTATAATAACATTTTTACCACTTCAAATGA GTTCGAAGATCTCATAATAACATTTTTACCACTTCAAATGA < 41bp 1 0.118889733247106 1 0.107596635818481 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122625228 chr10:122625220 nonsynonymous SNV 1.000 0 13 hm5C_associated_SNPs_20909 0 0 1 0 2 WDR11 chr10:122625142 3'AG 122625142 Downstream 79bp
chr10 122625220 122625220 1 + T C COAD 122625228 + 122625208 122625248 41 GTTCGAAGATCTTATAATAACATTTTTACCACTTCAAATGA GTTCGAAGATCTCATAATAACATTTTTACCACTTCAAATGA < 41bp 1 0.118889733247106 1 0.107596635818481 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122625228 chr10:122625220 nonsynonymous SNV 1.000 0 13 hm5C_associated_SNPs_20909 0 0 1 0 2 WDR11 chr10:122625256 5'GT 122625256 Upstream 37bp
chr15 45427484 45427484 1 + G T COAD 45427487 + 45427467 45427507 41 GTCCCAGCAATCCCCGGGACCCGGTGAGGCGGGGAAGGCGG GTCCCAGCAATCCCCGGTACCCGGTGAGGCGGGGAAGGCGG < 41bp 1 0.551200638892975 1 0.412852674722672 experiment 0.89759872221405 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45427487 chr15:45427484 nonsynonymous SNV 0.995 2 18 hm5C_associated_SNPs_20910 0 0 0 0 1 DUOX1 chr15:45427489 5'GT 45427489 Upstream 6bp
chr15 45427483 45427483 1 + G T COAD 45427487 + 45427467 45427507 41 GTCCCAGCAATCCCCGGGACCCGGTGAGGCGGGGAAGGCGG GTCCCAGCAATCCCCGTGACCCGGTGAGGCGGGGAAGGCGG < 41bp 1 0.540522490795497 1 0.451283723115921 experiment 0.918955018409006 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45427487 chr15:45427483 synonymous SNV . 0 17 hm5C_associated_SNPs_20911 0 0 0 0 1 DUOX1 chr15:45427489 5'GT 45427489 Upstream 7bp
chr7 142459661 142459661 1 + A C COAD 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTGAGACTGGGAGAGCACAACATCGACGTCCTGGAGGGGAA < 41bp 1 0.649964711688966 1 0.103840619325638 experiment 0.700070576622069 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459661 nonsynonymous SNV 0.195 1 27 hm5C_associated_SNPs_20912 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 37bp
chr7 142459661 142459661 1 + A C COAD 142459658 + 142459638 142459678 41 AGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAATGA AGACTGGGAGAGCACAACATCGACGTCCTGGAGGGGAATGA < 41bp 1 0.792598569454129 1 0.211161136627197 experiment 0.414802861091742 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459658 chr7:142459661 nonsynonymous SNV 0.195 1 24 hm5C_associated_SNPs_20913 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 37bp
chr7 142459661 142459661 1 + A C COAD 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCACAACATCGACGTCCTGGAGGGGAATGAGCAGTT < 41bp 1 0.445103179736186 1 0.307300806045532 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459661 nonsynonymous SNV 0.195 1 18 hm5C_associated_SNPs_20914 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 37bp
chr7 142459661 142459661 1 + A C COAD 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG ACGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG < 41bp 1 0.568853124269807 1 0.217536687850952 experiment 0.862293751460385 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459661 nonsynonymous SNV 0.195 1 2 hm5C_associated_SNPs_20915 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 37bp
chr8 48962476 48962476 1 + C T COAD 48962459 + 48962439 48962479 41 CCTGAAAGTAGAATGTGGACCTAAATACCCAGAAGCTCCTC CCTGAAAGTAGAATGTGGACCTAAATACCCAGAAGCTTCTC < 41bp 1 0.798103209558822 1 0.267650604248047 experiment 0.403793580882357 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBE2V2 ENSG00000169139 CDS Human protein_coding chr8:48962459 chr8:48962476 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_20917 0 0 1 0 2 UBE2V2 chr8:48962413 3'AG 48962413 Downstream 64bp
chr8 48962476 48962476 1 + C T COAD 48962459 + 48962439 48962479 41 CCTGAAAGTAGAATGTGGACCTAAATACCCAGAAGCTCCTC CCTGAAAGTAGAATGTGGACCTAAATACCCAGAAGCTTCTC < 41bp 1 0.798103209558822 1 0.267650604248047 experiment 0.403793580882357 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBE2V2 ENSG00000169139 CDS Human protein_coding chr8:48962459 chr8:48962476 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_20917 0 0 1 0 2 UBE2V2 chr8:48962538 5'GT 48962538 Upstream 63bp
chr4 5733335 5733335 1 + C T COAD 5733343 + 5733323 5733363 41 AGGTTTCTCAGCCGCACCTTCCTCCGGGTGAACGCCTTCCC AGGTTTCTCAGCTGCACCTTCCTCCGGGTGAACGCCTTCCC < 41bp 1 0.0425861955183283 1 0.0902552306652069 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EVC ENSG00000072840 CDS Human protein_coding chr4:5733343 chr4:5733335 nonsynonymous SNV 0.023 0 13 hm5C_associated_SNPs_20919 0 0 1 0 1 EVC chr4:5733384 5'GT 5733384 Upstream 50bp
chr4 99341184 99341184 1 + A G COAD 99341204 + 99341184 99341224 41 AAGATGTTATCAGCTGGGGTCACAGAGGCAGTTTTGAAATT GAGATGTTATCAGCTGGGGTCACAGAGGCAGTTTTGAAATT < 41bp 1 0.304027202732342 1 0.314304232597351 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99341204 chr4:99341184 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_20920 0 0 0 0 1 RAP1GDS1 chr4:99341170 3'AG 99341170 Downstream 15bp
chr12 104492158 104492158 1 + C T COAD 104492140 + 104492120 104492160 41 GAAAGAGACTCCTTCAAATCCAGTGGCCACAGTGAAAGCGG GAAAGAGACTCCTTCAAATCCAGTGGCCACAGTGAAAGTGG < 41bp 1 0.466733016970438 1 0.437508314847946 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104492140 chr12:104492158 nonsynonymous SNV 0.979 0 39 hm5C_associated_SNPs_20921 0 0 0 0 1 HCFC2 chr12:104492121 3'AG 104492121 Downstream 38bp
chr7 141341093 141341093 1 + A G COAD 141341103 + 141341083 141341123 41 CACGGGACCTACAGAGAGACCTCCCAATGAACCAGAGGAGA CACGGGACCTGCAGAGAGACCTCCCAATGAACCAGAGGAGA < 41bp 1 0.339476234966565 1 0.134291917085648 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGK ENSG00000006530 CDS Human protein_coding chr7:141341103 chr7:141341093 nonsynonymous SNV 0.996 0 11 hm5C_associated_SNPs_20922 0 0 1 0 1 AGK chr7:141341048 3'AG 141341048 Downstream 46bp
chr8 17419501 17419501 1 + C T COAD 17419497 + 17419477 17419517 41 TCTTGACCACTTACGGAGTTCATGCCATCACCAGGCTGGAG TCTTGACCACTTACGGAGTTCATGTCATCACCAGGCTGGAG < 41bp 1 0.314957959174109 1 0.0810132026672363 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17419497 chr8:17419501 nonsynonymous SNV 0.014 1 25 hm5C_associated_SNPs_20923 0 0 1 0 1 SLC7A2 chr8:17419453 3'AG 17419453 Downstream 49bp
chr7 142459627 142459627 1 + G T COAD 142459625 + 142459605 142459645 41 ATGCCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGG ATGCCTGCCCTGCCCATCAGCCTCATCCAGGTGAGACTGGG < 41bp 1 0.226878351676157 1 0.1024409532547 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459625 chr7:142459627 nonsynonymous SNV 0.686 3 23 hm5C_associated_SNPs_20924 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 3bp
chr7 142459627 142459627 1 + G T COAD 142459626 + 142459606 142459646 41 TGCCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGA TGCCTGCCCTGCCCATCAGCCTCATCCAGGTGAGACTGGGA < 41bp 1 0.269434964849247 1 0.181664943695068 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459626 chr7:142459627 nonsynonymous SNV 0.686 3 22 hm5C_associated_SNPs_20925 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 3bp
chr7 142459627 142459627 1 + G T COAD 142459628 + 142459608 142459648 41 CCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGA CCTGCCCTGCCCATCAGCCTCATCCAGGTGAGACTGGGAGA < 41bp 1 0.306314898510415 1 0.087552934885025 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459628 chr7:142459627 nonsynonymous SNV 0.686 3 20 hm5C_associated_SNPs_20926 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 3bp
chr7 142459627 142459627 1 + G T COAD 142459631 + 142459611 142459651 41 GCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGAGCA GCCCTGCCCATCAGCCTCATCCAGGTGAGACTGGGAGAGCA < 41bp 1 0.615646926792619 1 0.857844233512878 experiment 0.768706146414762 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459631 chr7:142459627 nonsynonymous SNV 0.686 3 17 hm5C_associated_SNPs_20927 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 3bp
chr1 233489657 233489657 1 + C T COAD 233489675 + 233489655 233489695 41 GCCCATTCCATCCACCTGCCCTGAGCCGTTTGCCAAGCTCA GCTCATTCCATCCACCTGCCCTGAGCCGTTTGCCAAGCTCA < 41bp 1 0.375152767062372 1 0.133218854665756 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233489675 chr1:233489657 nonsynonymous SNV 0.785 5 3 hm5C_associated_SNPs_20928 0 0 1 0 1 MAP3K21 chr1:233489701 5'GT 233489701 Upstream 45bp
chr15 69718690 69718690 1 + G A COAD 69718677 + 69718657 69718697 41 ATTTCTCTGTTGTCCTAGGCCAGAAAAAGAGACGTATTGCT ATTTCTCTGTTGTCCTAGGCCAGAAAAAGAGACATATTGCT < 41bp 1 0.516184320989485 1 0.544972121715546 experiment 0.96763135802103 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69718677 chr15:69718690 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_20929 0 0 1 0 1 KIF23 chr15:69718675 3'AG 69718675 Downstream 16bp
chr16 56667676 56667676 1 + C T COAD 56667667 + 56667647 56667687 41 TCCCCTTCTTCCCCAGGCTGCTGCTCCTGCTGCCCCGTGGG TCCCCTTCTTCCCCAGGCTGCTGCTCCTGTTGCCCCGTGGG < 41bp 1 0.22601403759929 1 0.111606806516647 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MT1M ENSG00000205364 CDS Human protein_coding chr16:56667667 chr16:56667676 synonymous SNV . 0 30 hm5C_associated_SNPs_20930 0 0 0 2 1 MT1M chr16:56667663 3'AG 56667663 Downstream 14bp
chr5 137735620 137735620 1 + A G COAD 137735614 + 137735594 137735634 41 GTGATGTGTGTGAAACAACTCTCTTCAACATCCACTGGGTT GTGATGTGTGTGAAACAACTCTCTTCGACATCCACTGGGTT < 41bp 1 0.130096418497052 1 0.0544739067554474 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM3B ENSG00000120733 CDS Human protein_coding chr5:137735614 chr5:137735620 nonsynonymous SNV 0.999 4 27 hm5C_associated_SNPs_20931 0 0 1 0 2 KDM3B chr5:137735549 3'AG 137735549 Downstream 72bp
chr5 137735620 137735620 1 + A G COAD 137735614 + 137735594 137735634 41 GTGATGTGTGTGAAACAACTCTCTTCAACATCCACTGGGTT GTGATGTGTGTGAAACAACTCTCTTCGACATCCACTGGGTT < 41bp 1 0.130096418497052 1 0.0544739067554474 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM3B ENSG00000120733 CDS Human protein_coding chr5:137735614 chr5:137735620 nonsynonymous SNV 0.999 4 27 hm5C_associated_SNPs_20931 0 0 1 0 2 KDM3B chr5:137735701 5'GT 137735701 Upstream 82bp
chr11 130013309 130013309 1 + C A COAD 130013308 + 130013288 130013328 41 AGAACCATGGCTATGAGAACCCCACCTACAAATACCTGGAG AGAACCATGGCTATGAGAACCACACCTACAAATACCTGGAG < 41bp 1 0.30230367946996 1 0.561814904212952 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130013308 chr11:130013309 nonsynonymous SNV 0.980 5 22 hm5C_associated_SNPs_20932 0 0 1 0 1 APLP2 chr11:130013242 3'AG 130013242 Downstream 68bp
chr6 158497751 158497751 1 + C T COAD 158497757 + 158497737 158497777 41 CAAGCGACAAATGCCGCACCCCCGCCTGGACAGACAGGGTG CAAGCGACAAATGCTGCACCCCCGCCTGGACAGACAGGGTG < 41bp 1 0.167018302379776 1 0.107027411460876 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158497757 chr6:158497751 nonsynonymous SNV 0.948 4 15 hm5C_associated_SNPs_20933 0 0 1 0 2 SYNJ2 chr6:158497658 3'AG 158497658 Downstream 94bp
chr6 158497751 158497751 1 + C T COAD 158497757 + 158497737 158497777 41 CAAGCGACAAATGCCGCACCCCCGCCTGGACAGACAGGGTG CAAGCGACAAATGCTGCACCCCCGCCTGGACAGACAGGGTG < 41bp 1 0.167018302379776 1 0.107027411460876 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158497757 chr6:158497751 nonsynonymous SNV 0.948 4 15 hm5C_associated_SNPs_20933 0 0 1 0 2 SYNJ2 chr6:158497814 5'GT 158497814 Upstream 64bp
chr6 158497751 158497751 1 + C T COAD 158497758 + 158497738 158497778 41 AAGCGACAAATGCCGCACCCCCGCCTGGACAGACAGGGTGC AAGCGACAAATGCTGCACCCCCGCCTGGACAGACAGGGTGC < 41bp 1 0.128821677701193 1 0.157418459653854 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158497758 chr6:158497751 nonsynonymous SNV 0.948 4 14 hm5C_associated_SNPs_20934 0 0 1 0 2 SYNJ2 chr6:158497658 3'AG 158497658 Downstream 94bp
chr6 158497751 158497751 1 + C T COAD 158497758 + 158497738 158497778 41 AAGCGACAAATGCCGCACCCCCGCCTGGACAGACAGGGTGC AAGCGACAAATGCTGCACCCCCGCCTGGACAGACAGGGTGC < 41bp 1 0.128821677701193 1 0.157418459653854 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158497758 chr6:158497751 nonsynonymous SNV 0.948 4 14 hm5C_associated_SNPs_20934 0 0 1 0 2 SYNJ2 chr6:158497814 5'GT 158497814 Upstream 64bp
chr12 53685788 53685788 1 + G T COAD 53685807 + 53685787 53685827 41 GGGAAAGCATGCCCAGCCTCCAAGCACTGCCTGTCACCCGG GTGAAAGCATGCCCAGCCTCCAAGCACTGCCTGTCACCCGG < 41bp 1 0.320888568687586 1 0.345775902271271 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53685807 chr12:53685788 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_20935 0 0 1 0 2 ESPL1 chr12:53685768 3'AG 53685768 Downstream 21bp
chr12 53685788 53685788 1 + G T COAD 53685807 + 53685787 53685827 41 GGGAAAGCATGCCCAGCCTCCAAGCACTGCCTGTCACCCGG GTGAAAGCATGCCCAGCCTCCAAGCACTGCCTGTCACCCGG < 41bp 1 0.320888568687586 1 0.345775902271271 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53685807 chr12:53685788 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_20935 0 0 1 0 2 ESPL1 chr12:53685872 5'GT 53685872 Upstream 85bp
chr11 33358677 33358677 1 + T C COAD 33358660 + 33358640 33358680 41 CTCAAGGTTTGCCAGGAGAACAGTTGTTAAATGTGGGTACT CTCAAGGTTTGCCAGGAGAACAGTTGTTAAATGTGGGCACT < 41bp 1 0.229046695348191 1 0.124679148197174 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HIPK3 ENSG00000110422 CDS Human protein_coding chr11:33358660 chr11:33358677 synonymous SNV . 0 38 hm5C_associated_SNPs_20937 0 0 1 0 2 HIPK3 chr11:33358621 3'AG 33358621 Downstream 57bp
chr11 33358677 33358677 1 + T C COAD 33358660 + 33358640 33358680 41 CTCAAGGTTTGCCAGGAGAACAGTTGTTAAATGTGGGTACT CTCAAGGTTTGCCAGGAGAACAGTTGTTAAATGTGGGCACT < 41bp 1 0.229046695348191 1 0.124679148197174 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HIPK3 ENSG00000110422 CDS Human protein_coding chr11:33358660 chr11:33358677 synonymous SNV . 0 38 hm5C_associated_SNPs_20937 0 0 1 0 2 HIPK3 chr11:33358740 5'GT 33358740 Upstream 64bp
chr7 55259434 55259434 1 + G A COAD 55259432 + 55259412 55259452 41 GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGA GGCATGAACTACTTGGAGGACCATCGCTTGGTGCACCGCGA < 41bp 1 0.0474997313550034 1 0.262443482875824 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55259432 chr7:55259434 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_20938 0 0 1 0 1 EGFR chr7:55259412 3'AG 55259412 Downstream 23bp
chr1 27088697 27088697 1 + C A COAD 27088714 + 27088694 27088734 41 GCTCAGCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA GCTAAGCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA < 41bp 1 0.221878236706639 1 0.077915221452713 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27088714 chr1:27088697 stopgain 0.990 1 4 hm5C_associated_SNPs_20940 0 0 1 0 1 ARID1A chr1:27088643 3'AG 27088643 Downstream 55bp
chr2 101622468 101622468 1 + A T COAD 101622449 + 101622429 101622469 41 CATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAG CATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGTG < 41bp 1 0.190103988494571 1 0.400793313980103 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622449 chr2:101622468 nonsynonymous SNV 0.999 2 40 hm5C_associated_SNPs_20941 0 0 1 0 2 RPL31 chr2:101622421 3'AG 101622421 Downstream 48bp
chr2 101622468 101622468 1 + A T COAD 101622449 + 101622429 101622469 41 CATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAG CATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGTG < 41bp 1 0.190103988494571 1 0.400793313980103 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622449 chr2:101622468 nonsynonymous SNV 0.999 2 40 hm5C_associated_SNPs_20941 0 0 1 0 2 RPL31 chr2:101622533 5'GT 101622533 Upstream 66bp
chr2 101622468 101622468 1 + A T COAD 101622453 + 101622433 101622473 41 CCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGGATG CCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGTGGATG < 41bp 1 0.73170515167981 1 0.698485136032104 experiment 0.536589696640381 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622453 chr2:101622468 nonsynonymous SNV 0.999 2 36 hm5C_associated_SNPs_20942 0 0 1 0 2 RPL31 chr2:101622421 3'AG 101622421 Downstream 48bp
chr2 101622468 101622468 1 + A T COAD 101622453 + 101622433 101622473 41 CCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGGATG CCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGTGGATG < 41bp 1 0.73170515167981 1 0.698485136032104 experiment 0.536589696640381 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622453 chr2:101622468 nonsynonymous SNV 0.999 2 36 hm5C_associated_SNPs_20942 0 0 1 0 2 RPL31 chr2:101622533 5'GT 101622533 Upstream 66bp
chr2 101622468 101622468 1 + A T COAD 101622461 + 101622441 101622481 41 GTGTGCGGCTGTCCAGAAAACGTAATGAGGATGAAGATTCA GTGTGCGGCTGTCCAGAAAACGTAATGTGGATGAAGATTCA < 41bp 1 0.711292413045651 1 0.455773085355759 experiment 0.577415173908698 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622461 chr2:101622468 nonsynonymous SNV 0.999 2 28 hm5C_associated_SNPs_20943 0 0 1 0 2 RPL31 chr2:101622421 3'AG 101622421 Downstream 48bp
chr2 101622468 101622468 1 + A T COAD 101622461 + 101622441 101622481 41 GTGTGCGGCTGTCCAGAAAACGTAATGAGGATGAAGATTCA GTGTGCGGCTGTCCAGAAAACGTAATGTGGATGAAGATTCA < 41bp 1 0.711292413045651 1 0.455773085355759 experiment 0.577415173908698 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622461 chr2:101622468 nonsynonymous SNV 0.999 2 28 hm5C_associated_SNPs_20943 0 0 1 0 2 RPL31 chr2:101622533 5'GT 101622533 Upstream 66bp
chr19 48179165 48179165 1 + G A COAD 48179146 + 48179126 48179166 41 CTGGATAATCCCGGGGAGGCCCAAAGTGCCTTCTATGAAGG CTGGATAATCCCGGGGAGGCCCAAAGTGCCTTCTATGAAAG < 41bp 1 0.155945184876516 1 0.614430606365204 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BICRA ENSG00000063169 CDS Human protein_coding chr19:48179146 chr19:48179165 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_20944 0 0 1 0 2 BICRA chr19:48179108 3'AG 48179108 Downstream 58bp
chr19 48179165 48179165 1 + G A COAD 48179146 + 48179126 48179166 41 CTGGATAATCCCGGGGAGGCCCAAAGTGCCTTCTATGAAGG CTGGATAATCCCGGGGAGGCCCAAAGTGCCTTCTATGAAAG < 41bp 1 0.155945184876516 1 0.614430606365204 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BICRA ENSG00000063169 CDS Human protein_coding chr19:48179146 chr19:48179165 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_20944 0 0 1 0 2 BICRA chr19:48179173 5'GT 48179173 Upstream 9bp
chr6 161519332 161519332 1 + G A COAD 161519314 + 161519294 161519334 41 TTTCTTCTTGTCTTAGCACTCGGAGCATGCCTTCCGACGCG TTTCTTCTTGTCTTAGCACTCGGAGCATGCCTTCCGACACG < 41bp 1 0.706716009039153 1 0.960439682006836 experiment 0.586567981921694 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161519314 chr6:161519332 nonsynonymous SNV 0.022 0 39 hm5C_associated_SNPs_20945 0 0 1 0 1 MAP3K4 chr6:161519310 3'AG 161519310 Downstream 23bp
chr1 220964945 220964945 1 + T G COAD 220964927 + 220964907 220964947 41 TGACCTGCGATGGTGACACCCTGACTCTCAGTGCAGCCTAC TGACCTGCGATGGTGACACCCTGACTCTCAGTGCAGCCGAC < 41bp 1 0.429095936255199 1 0.145555824041367 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC1 ENSG00000186205 CDS Human protein_coding chr1:220964927 chr1:220964945 nonsynonymous SNV 0.998 0 39 hm5C_associated_SNPs_20946 0 0 1 0 1 MARC1 chr1:220965006 5'GT 220965006 Upstream 62bp
chr1 220964945 220964945 1 + T G COAD 220964933 + 220964913 220964953 41 GCGATGGTGACACCCTGACTCTCAGTGCAGCCTACACAAAG GCGATGGTGACACCCTGACTCTCAGTGCAGCCGACACAAAG < 41bp 1 0.700351592115221 1 0.501465260982513 experiment 0.599296815769559 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC1 ENSG00000186205 CDS Human protein_coding chr1:220964933 chr1:220964945 nonsynonymous SNV 0.998 0 33 hm5C_associated_SNPs_20947 0 0 1 0 1 MARC1 chr1:220965006 5'GT 220965006 Upstream 62bp
chr19 7589943 7589943 1 + G A COAD 7589936 + 7589916 7589956 41 CACCCCCAGAAGAGGAAGACCTTCGCCGTCGTCTCAAATAC CACCCCCAGAAGAGGAAGACCTTCGCCATCGTCTCAAATAC < 41bp 1 0.310369215405765 1 0.181242257356644 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7589936 chr19:7589943 nonsynonymous SNV 0.985 4 28 hm5C_associated_SNPs_20950 0 0 1 0 1 MCOLN1 chr19:7589847 3'AG 7589847 Downstream 97bp
chr19 45974486 45974486 1 + G A COAD 45974494 + 45974474 45974514 41 AGCGAAGGGTGCGCCGGGAACGAAATAAACTAGCAGCAGCT AGCGAAGGGTGCACCGGGAACGAAATAAACTAGCAGCAGCT < 41bp 1 0.66608760826416 1 0.473102778196335 experiment 0.667824783471681 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45974494 chr19:45974486 nonsynonymous SNV 0.998 4 13 hm5C_associated_SNPs_20951 0 0 0 0 2 FOSB chr19:45974452 3'AG 45974452 Downstream 35bp
chr19 45974486 45974486 1 + G A COAD 45974494 + 45974474 45974514 41 AGCGAAGGGTGCGCCGGGAACGAAATAAACTAGCAGCAGCT AGCGAAGGGTGCACCGGGAACGAAATAAACTAGCAGCAGCT < 41bp 1 0.66608760826416 1 0.473102778196335 experiment 0.667824783471681 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45974494 chr19:45974486 nonsynonymous SNV 0.998 4 13 hm5C_associated_SNPs_20951 0 0 0 0 2 FOSB chr19:45974559 5'GT 45974559 Upstream 74bp
chr9 131455957 131455957 1 + G A COAD 131455942 + 131455922 131455962 41 GACGAAACGTTCGAGTCAAACGCAGAATAAAGCCAGCAGGA GACGAAACGTTCGAGTCAAACGCAGAATAAAGCCAACAGGA < 41bp 1 0.784574856525354 1 0.618277788162231 experiment 0.430850286949293 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SET ENSG00000119335 CDS Human protein_coding chr9:131455942 chr9:131455957 nonsynonymous SNV 1.000 0 36 hm5C_associated_SNPs_20952 0 0 1 1 1 SET chr9:131455917 3'AG 131455917 Downstream 41bp
chr1 78001627 78001627 1 + C T COAD 78001612 + 78001592 78001632 41 CTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGTGGACGACAC CTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGTGGATGACAC < 41bp 1 0.353689372592684 1 0.470032870769501 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001612 chr1:78001627 synonymous SNV . 0 36 hm5C_associated_SNPs_20953 0 0 0 0 1 AK5 chr1:78001532 3'AG 78001532 Downstream 96bp
chr1 54670693 54670693 1 + G A COAD 54670699 + 54670679 54670719 41 ATTACCTCAAAGGTGTAAAGCAGGCCCTCTGGCTCACCAAG ATTACCTCAAAGGTATAAAGCAGGCCCTCTGGCTCACCAAG < 41bp 1 0.374881088521347 1 0.649189710617065 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MRPL37 ENSG00000116221 CDS Human protein_coding chr1:54670699 chr1:54670693 nonsynonymous SNV 0.912 1 15 hm5C_associated_SNPs_20956 0 0 1 0 1 MRPL37 chr1:54670691 3'AG 54670691 Downstream 3bp
chr12 31244686 31244686 1 + G A COAD 31244687 + 31244667 31244707 41 CTATCAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGG CTATCAGATGCTGCTGCATACGGCCACTCGGCAGGCCGCGG < 41bp 1 0.605957015455605 1 0.275212496519089 experiment 0.788085969088789 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244687 chr12:31244686 nonsynonymous SNV 0.290 0 20 hm5C_associated_SNPs_20957 0 0 1 0 1 DDX11 chr12:31244653 3'AG 31244653 Downstream 34bp
chr12 31244686 31244686 1 + G A COAD 31244691 + 31244671 31244711 41 CAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGGGCAT CAGATGCTGCTGCATACGGCCACTCGGCAGGCCGCGGGCAT < 41bp 1 0.226120456403945 1 0.033778965473175 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244691 chr12:31244686 nonsynonymous SNV 0.290 0 16 hm5C_associated_SNPs_20958 0 0 1 0 1 DDX11 chr12:31244653 3'AG 31244653 Downstream 34bp
chr3 126724993 126724993 1 + G A COAD 126725001 + 126724981 126725021 41 TCTGTGGACTTCGTCTTCTACAACTGCAGCGTCCACCAGTC TCTGTGGACTTCATCTTCTACAACTGCAGCGTCCACCAGTC < 41bp 1 0.208777985344973 1 0.216783136129379 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126725001 chr3:126724993 nonsynonymous SNV 0.998 0 13 hm5C_associated_SNPs_20960 0 0 1 0 2 PLXNA1 chr3:126724922 3'AG 126724922 Downstream 72bp
chr3 126724993 126724993 1 + G A COAD 126725001 + 126724981 126725021 41 TCTGTGGACTTCGTCTTCTACAACTGCAGCGTCCACCAGTC TCTGTGGACTTCATCTTCTACAACTGCAGCGTCCACCAGTC < 41bp 1 0.208777985344973 1 0.216783136129379 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126725001 chr3:126724993 nonsynonymous SNV 0.998 0 13 hm5C_associated_SNPs_20960 0 0 1 0 2 PLXNA1 chr3:126725021 5'GT 126725021 Upstream 29bp
chr21 44152048 44152048 1 + G A COAD 44152044 + 44152024 44152064 41 AGGGCTGCTACCAGGAAGGCCAGCGCATCCCTCCAGGTAAC AGGGCTGCTACCAGGAAGGCCAGCACATCCCTCCAGGTAAC < 41bp 1 0.756627049148367 1 0.177804082632065 experiment 0.486745901703266 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDE9A ENSG00000160191 CDS Human protein_coding chr21:44152044 chr21:44152048 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_20961 0 0 0 0 1 PDE9A chr21:44152059 5'GT 44152059 Upstream 12bp
chr2 27663746 27663746 1 + C A COAD 27663756 + 27663736 27663776 41 GTGACATCACCTGTCGTGCCCCCCTCTGTCAAGACTCCGAC GTGACATCACATGTCGTGCCCCCCTCTGTCAAGACTCCGAC < 41bp 1 0.23359408973323 1 0.0167120397090912 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663756 chr2:27663746 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_20963 0 0 0 0 2 NRBP1 chr2:27663672 3'AG 27663672 Downstream 75bp
chr2 27663746 27663746 1 + C A COAD 27663756 + 27663736 27663776 41 GTGACATCACCTGTCGTGCCCCCCTCTGTCAAGACTCCGAC GTGACATCACATGTCGTGCCCCCCTCTGTCAAGACTCCGAC < 41bp 1 0.23359408973323 1 0.0167120397090912 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663756 chr2:27663746 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_20963 0 0 0 0 2 NRBP1 chr2:27663807 5'GT 27663807 Upstream 62bp
chr19 58906065 58906065 1 + A G COAD 58906069 + 58906049 58906089 41 GGCTCCTCGAACTCCTATGCCATTAAGAAGAAGGACGAGCT GGCTCCTCGAACTCCTGTGCCATTAAGAAGAAGGACGAGCT < 41bp 1 0.194632415575259 1 0.0768926441669464 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906069 chr19:58906065 nonsynonymous SNV 0.999 4 17 hm5C_associated_SNPs_20965 0 0 1 0 1 RPS5 chr19:58906049 3'AG 58906049 Downstream 17bp
chr22 29695767 29695767 1 + G T COAD 29695781 + 29695761 29695801 41 CCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG CCCTGGTGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG < 41bp 1 0.385495724449795 1 0.214234828948975 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695781 chr22:29695767 synonymous SNV . 0 7 hm5C_associated_SNPs_20966 0 0 1 0 1 EWSR1 chr22:29695841 5'GT 29695841 Upstream 75bp
chr14 102466429 102466429 1 + C T COAD 102466414 + 102466394 102466434 41 GGACGACAGAGAGAAGTGTGCAAAGGCCAAGGAGGCGCTGG GGACGACAGAGAGAAGTGTGCAAAGGCCAAGGAGGTGCTGG < 41bp 1 0.184433382319026 1 0.595104157924652 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466414 chr14:102466429 nonsynonymous SNV 0.950 4 36 hm5C_associated_SNPs_20967 0 0 1 0 1 DYNC1H1 chr14:102466481 5'GT 102466481 Upstream 53bp
chr7 92020506 92020506 1 + C T COAD 92020521 + 92020501 92020541 41 GAAGACCTTGCCCAGAAAGTCAATAGGCCTTACCTTCGCAC GAAGATCTTGCCCAGAAAGTCAATAGGCCTTACCTTCGCAC < 41bp 1 0.5618375867715 1 0.164506286382675 experiment 0.876324826457001 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:92020521 chr7:92020506 synonymous SNV . 0 6 hm5C_associated_SNPs_20968 0 0 1 0 1 ANKIB1 chr7:92020480 3'AG 92020480 Downstream 27bp
chr1 44071227 44071227 1 + T C COAD 44071222 + 44071202 44071242 41 GGTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGG GGTTCTACATTGTTGTGGTGCCCATCGACCGTGTGGGCGGG < 41bp 1 0.0648904351408582 1 0.0541650354862213 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44071222 chr1:44071227 synonymous SNV . 0 26 hm5C_associated_SNPs_20969 0 0 1 0 2 PTPRF chr1:44071200 3'AG 44071200 Downstream 28bp
chr1 44071227 44071227 1 + T C COAD 44071222 + 44071202 44071242 41 GGTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGG GGTTCTACATTGTTGTGGTGCCCATCGACCGTGTGGGCGGG < 41bp 1 0.0648904351408582 1 0.0541650354862213 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44071222 chr1:44071227 synonymous SNV . 0 26 hm5C_associated_SNPs_20969 0 0 1 0 2 PTPRF chr1:44071293 5'GT 44071293 Upstream 67bp
chr1 44071227 44071227 1 + T C COAD 44071223 + 44071203 44071243 41 GTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGGA GTTCTACATTGTTGTGGTGCCCATCGACCGTGTGGGCGGGA < 41bp 1 0.0346422777713279 1 0.137199401855469 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44071223 chr1:44071227 synonymous SNV . 0 25 hm5C_associated_SNPs_20970 0 0 1 0 2 PTPRF chr1:44071200 3'AG 44071200 Downstream 28bp
chr1 44071227 44071227 1 + T C COAD 44071223 + 44071203 44071243 41 GTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGGA GTTCTACATTGTTGTGGTGCCCATCGACCGTGTGGGCGGGA < 41bp 1 0.0346422777713279 1 0.137199401855469 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44071223 chr1:44071227 synonymous SNV . 0 25 hm5C_associated_SNPs_20970 0 0 1 0 2 PTPRF chr1:44071293 5'GT 44071293 Upstream 67bp
chr5 179004135 179004135 1 + G T COAD 179004115 + 179004095 179004135 41 CCCTCTACCTTAAGGATGTGCAGGATCTTGATGGTGGCAAG CCCTCTACCTTAAGGATGTGCAGGATCTTGATGGTGGCAAT < 41bp 1 0.740493610164583 1 0.515209317207336 experiment 0.519012779670834 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179004115 chr5:179004135 nonsynonymous SNV 0.983 0 41 hm5C_associated_SNPs_20971 0 0 0 0 2 RUFY1 chr5:179004076 3'AG 179004076 Downstream 60bp
chr5 179004135 179004135 1 + G T COAD 179004115 + 179004095 179004135 41 CCCTCTACCTTAAGGATGTGCAGGATCTTGATGGTGGCAAG CCCTCTACCTTAAGGATGTGCAGGATCTTGATGGTGGCAAT < 41bp 1 0.740493610164583 1 0.515209317207336 experiment 0.519012779670834 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179004115 chr5:179004135 nonsynonymous SNV 0.983 0 41 hm5C_associated_SNPs_20971 0 0 0 0 2 RUFY1 chr5:179004137 5'GT 179004137 Upstream 3bp
chrX 48457784 48457784 1 + G A COAD 48457772 + 48457752 48457792 41 TGATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTG TGATCCTCGGGCCCTGGGGGCCCGTGGGCACCATCGTTCTG < 41bp 1 0.313060258676583 1 0.0420770347118378 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457772 chrX:48457784 nonsynonymous SNV 0.994 3 33 hm5C_associated_SNPs_20972 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 67bp
chrX 48457784 48457784 1 + G A COAD 48457773 + 48457753 48457793 41 GATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGT GATCCTCGGGCCCTGGGGGCCCGTGGGCACCATCGTTCTGT < 41bp 1 0.289485772648582 1 0.211584538221359 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457773 chrX:48457784 nonsynonymous SNV 0.994 3 32 hm5C_associated_SNPs_20973 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 67bp
chrX 48457784 48457784 1 + G A COAD 48457774 + 48457754 48457794 41 ATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGTC ATCCTCGGGCCCTGGGGGCCCGTGGGCACCATCGTTCTGTC < 41bp 1 0.727067256313557 1 0.398830473423004 experiment 0.545865487372885 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457774 chrX:48457784 nonsynonymous SNV 0.994 3 31 hm5C_associated_SNPs_20974 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 67bp
chr19 13248341 13248341 1 + G A COAD 13248325 + 13248305 13248345 41 AACAGCTGCGGCACCGGCATCCGCTCTTCTACCAACGATCC AACAGCTGCGGCACCGGCATCCGCTCTTCTACCAACAATCC < 41bp 1 0.12969266303324 1 0.0815125107765198 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NACC1 ENSG00000160877 CDS Human protein_coding chr19:13248325 chr19:13248341 nonsynonymous SNV 0.424 2 37 hm5C_associated_SNPs_20975 0 0 1 0 1 NACC1 chr19:13248292 3'AG 13248292 Downstream 50bp
chr3 9976245 9976245 1 + T C COAD 9976249 + 9976229 9976269 41 AGTCTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGC AGTCTTCTCCCCCGCCCCAGCCCCATCCGTGTCATACCTGC < 41bp 1 0.474472728265417 1 0.165260553359985 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976249 chr3:9976245 synonymous SNV . 0 17 hm5C_associated_SNPs_20976 0 0 1 0 1 CRELD1 chr3:9976296 5'GT 9976296 Upstream 52bp
chr3 9976245 9976245 1 + T C COAD 9976251 + 9976231 9976271 41 TCTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGCCG TCTTCTCCCCCGCCCCAGCCCCATCCGTGTCATACCTGCCG < 41bp 1 0.0357540018579389 1 0.0380202531814575 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976251 chr3:9976245 synonymous SNV . 0 15 hm5C_associated_SNPs_20977 0 0 1 0 1 CRELD1 chr3:9976296 5'GT 9976296 Upstream 52bp
chr3 9976245 9976245 1 + T C COAD 9976252 + 9976232 9976272 41 CTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGCCGG CTTCTCCCCCGCCCCAGCCCCATCCGTGTCATACCTGCCGG < 41bp 1 0.199397220176887 1 0.230963051319122 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976252 chr3:9976245 synonymous SNV . 0 14 hm5C_associated_SNPs_20978 0 0 1 0 1 CRELD1 chr3:9976296 5'GT 9976296 Upstream 52bp
chr8 22064483 22064483 1 + C T COAD 22064464 + 22064444 22064484 41 AAGGAGTGCACGTGGGCCATCTCCAGCACCCCCGGGCACCG AAGGAGTGCACGTGGGCCATCTCCAGCACCCCCGGGCACTG < 41bp 1 0.72885219378715 1 0.866109848022461 experiment 0.5422956124257 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22064464 chr8:22064483 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_20979 0 0 0 0 1 BMP1 chr8:22064494 5'GT 22064494 Upstream 12bp
chr18 29116355 29116355 1 + T C COAD 29116350 + 29116330 29116370 41 GTTTCTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAA GTTTCTCCGTCATTGACAAACCACCCGGCATGGCAGAAAAA < 41bp 1 0.0882102832614394 1 0.0896272957324982 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116350 chr18:29116355 synonymous SNV . 0 26 hm5C_associated_SNPs_20980 0 0 1 0 1 DSG2 chr18:29116392 5'GT 29116392 Upstream 38bp
chr18 29116355 29116355 1 + T C COAD 29116354 + 29116334 29116374 41 CTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAATGGA CTCCGTCATTGACAAACCACCCGGCATGGCAGAAAAATGGA < 41bp 1 0.2161685631634 1 0.193851143121719 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116354 chr18:29116355 synonymous SNV . 0 22 hm5C_associated_SNPs_20981 0 0 1 0 1 DSG2 chr18:29116392 5'GT 29116392 Upstream 38bp
chr18 29116355 29116355 1 + T C COAD 29116363 + 29116343 29116383 41 TGACAAACCACCTGGCATGGCAGAAAAATGGAAAATAGCAC TGACAAACCACCCGGCATGGCAGAAAAATGGAAAATAGCAC < 41bp 1 0.571061937592053 1 0.359875530004501 experiment 0.857876124815894 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116363 chr18:29116355 synonymous SNV . 0 13 hm5C_associated_SNPs_20982 0 0 1 0 1 DSG2 chr18:29116392 5'GT 29116392 Upstream 38bp
chr3 61975335 61975335 1 + T C COAD 61975349 + 61975329 61975369 41 CTAGTGTCAGCTGTGGGGGCCGTCACCAGTCTCCTATTGAC CTAGTGCCAGCTGTGGGGGCCGTCACCAGTCTCCTATTGAC < 41bp 1 0.184405834086623 1 0.19068843126297 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:61975349 chr3:61975335 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_20984 0 0 1 0 1 PTPRG chr3:61975299 3'AG 61975299 Downstream 37bp
chr6 33179725 33179725 1 + C T COAD 33179728 + 33179708 33179748 41 TTGCCCAGCCTGGAGGGCGTCAGTGAAAAGCAGTACACCAT TTGCCCAGCCTGGAGGGTGTCAGTGAAAAGCAGTACACCAT < 41bp 1 0.64974866503201 1 0.166161507368088 experiment 0.70050266993598 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RING1 ENSG00000204227 CDS Human protein_coding chr6:33179728 chr6:33179725 synonymous SNV . 0 18 hm5C_associated_SNPs_20985 0 0 1 0 1 RING1 chr6:33179779 5'GT 33179779 Upstream 55bp
chr7 127342544 127342544 1 + T C COAD 127342535 + 127342515 127342555 41 AGTGTGGTCAGGGCCCTGCTCCTCCCAGATTACTACCTGGT AGTGTGGTCAGGGCCCTGCTCCTCCCAGACTACTACCTGGT < 41bp 1 0.0511992407896513 1 0.0559619963169098 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SND1 ENSG00000197157 CDS Human protein_coding chr7:127342535 chr7:127342544 synonymous SNV . 0 30 hm5C_associated_SNPs_20986 0 0 1 0 2 SND1 chr7:127342489 3'AG 127342489 Downstream 56bp
chr7 127342544 127342544 1 + T C COAD 127342535 + 127342515 127342555 41 AGTGTGGTCAGGGCCCTGCTCCTCCCAGATTACTACCTGGT AGTGTGGTCAGGGCCCTGCTCCTCCCAGACTACTACCTGGT < 41bp 1 0.0511992407896513 1 0.0559619963169098 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SND1 ENSG00000197157 CDS Human protein_coding chr7:127342535 chr7:127342544 synonymous SNV . 0 30 hm5C_associated_SNPs_20986 0 0 1 0 2 SND1 chr7:127342580 5'GT 127342580 Upstream 37bp
chr10 95262965 95262965 1 + C A COAD 95262979 + 95262959 95262999 41 GAAGGCCAGATATAGTACTACCACATTGCTTGAACAGCTGG GAAGGCAAGATATAGTACTACCACATTGCTTGAACAGCTGG < 41bp 1 0.47416722902498 1 0.0793690383434296 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP55 ENSG00000138180 CDS Human protein_coding chr10:95262979 chr10:95262965 synonymous SNV . 0 7 hm5C_associated_SNPs_20988 0 0 1 0 1 CEP55 chr10:95262870 3'AG 95262870 Downstream 96bp
chr10 95262965 95262965 1 + C A COAD 95262980 + 95262960 95263000 41 AAGGCCAGATATAGTACTACCACATTGCTTGAACAGCTGGA AAGGCAAGATATAGTACTACCACATTGCTTGAACAGCTGGA < 41bp 1 0.394722621521926 1 0.101385235786438 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP55 ENSG00000138180 CDS Human protein_coding chr10:95262980 chr10:95262965 synonymous SNV . 0 6 hm5C_associated_SNPs_20989 0 0 1 0 1 CEP55 chr10:95262870 3'AG 95262870 Downstream 96bp
chr10 95262965 95262965 1 + C A COAD 95262982 + 95262962 95263002 41 GGCCAGATATAGTACTACCACATTGCTTGAACAGCTGGAAG GGCAAGATATAGTACTACCACATTGCTTGAACAGCTGGAAG < 41bp 1 0.271081084345031 1 0.168268829584122 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP55 ENSG00000138180 CDS Human protein_coding chr10:95262982 chr10:95262965 synonymous SNV . 0 4 hm5C_associated_SNPs_20990 0 0 1 0 1 CEP55 chr10:95262870 3'AG 95262870 Downstream 96bp
chr19 46003801 46003801 1 + G T COAD 46003784 + 46003764 46003804 41 ACTCTGGCCTCAGAGGACATCCCAGATTTACCTCCTGGGGG ACTCTGGCCTCAGAGGACATCCCAGATTTACCTCCTGTGGG < 41bp 1 0.349835782310929 1 0.373935461044312 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control PPM1N ENSG00000213889 CDS Human protein_coding chr19:46003784 chr19:46003801 nonsynonymous SNV 0.998 3 38 hm5C_associated_SNPs_20991 0 0 0 0 2 PPM1N chr19:46003714 3'AG 46003714 Downstream 88bp
chr19 46003801 46003801 1 + G T COAD 46003784 + 46003764 46003804 41 ACTCTGGCCTCAGAGGACATCCCAGATTTACCTCCTGGGGG ACTCTGGCCTCAGAGGACATCCCAGATTTACCTCCTGTGGG < 41bp 1 0.349835782310929 1 0.373935461044312 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control PPM1N ENSG00000213889 CDS Human protein_coding chr19:46003784 chr19:46003801 nonsynonymous SNV 0.998 3 38 hm5C_associated_SNPs_20991 0 0 0 0 2 PPM1N chr19:46003819 5'GT 46003819 Upstream 19bp
chr2 27595509 27595509 1 + C T COAD 27595510 + 27595490 27595530 41 CTTCGGAAGGAGTATGGGGCCAATGTGCTTCCTGCATTCCC CTTCGGAAGGAGTATGGGGTCAATGTGCTTCCTGCATTCCC < 41bp 1 0.452536632454035 1 0.222383409738541 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SNX17 ENSG00000115234 CDS Human protein_coding chr2:27595510 chr2:27595509 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_20992 0 0 1 0 2 SNX17 chr2:27595490 3'AG 27595490 Downstream 20bp
chr2 27595509 27595509 1 + C T COAD 27595510 + 27595490 27595530 41 CTTCGGAAGGAGTATGGGGCCAATGTGCTTCCTGCATTCCC CTTCGGAAGGAGTATGGGGTCAATGTGCTTCCTGCATTCCC < 41bp 1 0.452536632454035 1 0.222383409738541 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SNX17 ENSG00000115234 CDS Human protein_coding chr2:27595510 chr2:27595509 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_20992 0 0 1 0 2 SNX17 chr2:27595607 5'GT 27595607 Upstream 99bp
chr16 58074002 58074002 1 + G A COAD 58073989 + 58073969 58074009 41 CCGTTTGATGGCACCGGTGGCTTTCTGGCCCACGCCTATTT CCGTTTGATGGCACCGGTGGCTTTCTGGCCCACACCTATTT < 41bp 1 0.0542160858283162 1 0.0553499162197113 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MMP15 ENSG00000102996 CDS Human protein_coding chr16:58073989 chr16:58074002 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_20993 0 0 0 0 1 MMP15 chr16:58074086 5'GT 58074086 Upstream 85bp
chr1 242052807 242052807 1 + C A COAD 242052812 + 242052792 242052832 41 AAGAAACCCCTGTCCCCAGTCAGAGATAACATCCAACTAAC AAGAAACCCCTGTCCACAGTCAGAGATAACATCCAACTAAC < 41bp 1 0.699337484353487 1 0.935187518596649 experiment 0.601325031293025 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EXO1 ENSG00000174371 CDS Human other chr1:242052812 chr1:242052807 nonsynonymous SNV 0.990 4 16 hm5C_associated_SNPs_20995 0 0 1 1 2 EXO1;EXO1 chr1:242052767 3'AG 242052767 Downstream 41bp
chr1 242052807 242052807 1 + C A COAD 242052812 + 242052792 242052832 41 AAGAAACCCCTGTCCCCAGTCAGAGATAACATCCAACTAAC AAGAAACCCCTGTCCACAGTCAGAGATAACATCCAACTAAC < 41bp 1 0.699337484353487 1 0.935187518596649 experiment 0.601325031293025 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EXO1 ENSG00000174371 CDS Human protein_coding chr1:242052812 chr1:242052807 nonsynonymous SNV 0.990 4 16 hm5C_associated_SNPs_20995 0 0 1 1 2 EXO1 chr1:242052769 3'AG 242052769 Downstream 39bp
chr10 13251099 13251099 1 + G A COAD 13251100 + 13251080 13251120 41 TTCTGTTTCAGTAACTGTGGCCTCTACAAATGGGAACGGGA TTCTGTTTCAGTAACTGTGACCTCTACAAATGGGAACGGGA < 41bp 1 0.0312095457369788 1 0.122495174407959 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM10 ENSG00000065328 CDS Human protein_coding chr10:13251100 chr10:13251099 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_21000 0 0 1 0 2 MCM10 chr10:13251091 3'AG 13251091 Downstream 9bp
chr10 13251099 13251099 1 + G A COAD 13251100 + 13251080 13251120 41 TTCTGTTTCAGTAACTGTGGCCTCTACAAATGGGAACGGGA TTCTGTTTCAGTAACTGTGACCTCTACAAATGGGAACGGGA < 41bp 1 0.0312095457369788 1 0.122495174407959 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM10 ENSG00000065328 CDS Human protein_coding chr10:13251100 chr10:13251099 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_21000 0 0 1 0 2 MCM10 chr10:13251133 5'GT 13251133 Upstream 35bp
chr10 13251099 13251099 1 + G A COAD 13251101 + 13251081 13251121 41 TCTGTTTCAGTAACTGTGGCCTCTACAAATGGGAACGGGAC TCTGTTTCAGTAACTGTGACCTCTACAAATGGGAACGGGAC < 41bp 1 0.315574805664326 1 0.750568389892578 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM10 ENSG00000065328 CDS Human protein_coding chr10:13251101 chr10:13251099 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_21001 0 0 1 0 2 MCM10 chr10:13251091 3'AG 13251091 Downstream 9bp
chr10 13251099 13251099 1 + G A COAD 13251101 + 13251081 13251121 41 TCTGTTTCAGTAACTGTGGCCTCTACAAATGGGAACGGGAC TCTGTTTCAGTAACTGTGACCTCTACAAATGGGAACGGGAC < 41bp 1 0.315574805664326 1 0.750568389892578 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM10 ENSG00000065328 CDS Human protein_coding chr10:13251101 chr10:13251099 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_21001 0 0 1 0 2 MCM10 chr10:13251133 5'GT 13251133 Upstream 35bp
chr10 13251099 13251099 1 + G A COAD 13251116 + 13251096 13251136 41 GTGGCCTCTACAAATGGGAACGGGACGGAATGCTAAAGGTA GTGACCTCTACAAATGGGAACGGGACGGAATGCTAAAGGTA < 41bp 1 0.539905930861604 1 0.600476145744324 experiment 0.920188138276793 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM10 ENSG00000065328 CDS Human protein_coding chr10:13251116 chr10:13251099 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_21002 0 0 1 0 2 MCM10 chr10:13251091 3'AG 13251091 Downstream 9bp
chr10 13251099 13251099 1 + G A COAD 13251116 + 13251096 13251136 41 GTGGCCTCTACAAATGGGAACGGGACGGAATGCTAAAGGTA GTGACCTCTACAAATGGGAACGGGACGGAATGCTAAAGGTA < 41bp 1 0.539905930861604 1 0.600476145744324 experiment 0.920188138276793 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM10 ENSG00000065328 CDS Human protein_coding chr10:13251116 chr10:13251099 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_21002 0 0 1 0 2 MCM10 chr10:13251133 5'GT 13251133 Upstream 35bp
chr8 56922493 56922493 1 + G A COAD 56922491 + 56922471 56922511 41 AACTAATGCCGACGTGATGACCGCCCTGTCCCAGGGCTACA AACTAATGCCGACGTGATGACCACCCTGTCCCAGGGCTACA < 41bp 1 0.152363927250803 1 0.019383430480957 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56922491 chr8:56922493 nonsynonymous SNV 0.979 2 23 hm5C_associated_SNPs_21003 0 0 1 0 1 LYN chr8:56922467 3'AG 56922467 Downstream 27bp
chr5 92923702 92923702 1 + C T COAD 92923717 + 92923697 92923737 41 AACGGCCACTGCTACCTGTCCGGCTACATCTCGCTGCTGCT AACGGTCACTGCTACCTGTCCGGCTACATCTCGCTGCTGCT < 41bp 1 0.356195570970117 1 0.240815430879593 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NR2F1 ENSG00000175745 CDS Human protein_coding chr5:92923717 chr5:92923702 synonymous SNV . 0 6 hm5C_associated_SNPs_21004 0 0 1 0 1 NR2F1 chr5:92923623 3'AG 92923623 Downstream 80bp
chr7 40102523 40102523 1 + G A COAD 40102521 + 40102501 40102541 41 CCAGCCATTGATGTATGGAGCTGTGGGTAAGATAGCCTTAT CCAGCCATTGATGTATGGAGCTATGGGTAAGATAGCCTTAT < 41bp 1 0.147725652673597 1 0.362623661756516 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:40102521 chr7:40102523 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_21005 0 0 1 0 2 CDK13 chr7:40102425 3'AG 40102425 Downstream 99bp
chr7 40102523 40102523 1 + G A COAD 40102521 + 40102501 40102541 41 CCAGCCATTGATGTATGGAGCTGTGGGTAAGATAGCCTTAT CCAGCCATTGATGTATGGAGCTATGGGTAAGATAGCCTTAT < 41bp 1 0.147725652673597 1 0.362623661756516 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:40102521 chr7:40102523 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_21005 0 0 1 0 2 CDK13 chr7:40102526 5'GT 40102526 Upstream 4bp
chr6 118015231 118015231 1 + G A COAD 118015223 + 118015203 118015243 41 GCCATTTGGCAGTGAAGGTGCTGTCTCCGGAAGATGGAAAA GCCATTTGGCAGTGAAGGTGCTGTCTCCAGAAGATGGAAAA < 41bp 1 0.186901530314668 1 0.104342639446259 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUS1 ENSG00000153989 CDS Human protein_coding chr6:118015223 chr6:118015231 synonymous SNV . 0 29 hm5C_associated_SNPs_21006 0 0 0 0 1 NUS1 chr6:118015194 3'AG 118015194 Downstream 38bp
chr9 130164926 130164926 1 + C T COAD 130164924 + 130164904 130164944 41 ATGTGCTTCATGCCCGAGACCCCGCGCTTCCTGCTGACTCA ATGTGCTTCATGCCCGAGACCCTGCGCTTCCTGCTGACTCA < 41bp 1 0.117899085488609 1 0.0687520205974579 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A8 ENSG00000136856 CDS Human protein_coding chr9:130164924 chr9:130164926 nonsynonymous SNV 0.983 5 23 hm5C_associated_SNPs_21007 0 0 1 0 1 SLC2A8 chr9:130164836 3'AG 130164836 Downstream 91bp
chr12 122252101 122252101 1 + G A COAD 122252118 + 122252098 122252138 41 CATGGTGGTGACCCCAGGAGCGGCAGCCGTGGCAGCCCCTT CATAGTGGTGACCCCAGGAGCGGCAGCCGTGGCAGCCCCTT < 41bp 1 0.777858973564939 1 0.70367819070816 experiment 0.444282052870122 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD1B ENSG00000139718 CDS Human protein_coding chr12:122252118 chr12:122252101 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_21008 0 0 1 0 1 SETD1B chr12:122252012 3'AG 122252012 Downstream 90bp
chr6 15511627 15511627 1 + G A COAD 15511609 + 15511589 15511629 41 CCAATGGCACCCCAGGGCTGCAGATGCTGGAAAGCAACGTC CCAATGGCACCCCAGGGCTGCAGATGCTGGAAAGCAACATC < 41bp 1 0.191178771582869 1 0.327233552932739 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JARID2 ENSG00000008083 CDS Human protein_coding chr6:15511609 chr6:15511627 nonsynonymous SNV 0.996 1 39 hm5C_associated_SNPs_21009 0 0 1 0 1 JARID2 chr6:15511632 5'GT 15511632 Upstream 6bp
chr19 40883710 40883710 1 + C T COAD 40883722 + 40883702 40883742 41 GTGGTCCCCGCGGATGAGGCCCAGGCTCGAATCCCATATGC GTGGTCCCTGCGGATGAGGCCCAGGCTCGAATCCCATATGC < 41bp 1 0.481993169237879 1 0.356693178415298 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40883722 chr19:40883710 synonymous SNV . 0 9 hm5C_associated_SNPs_21010 0 0 1 0 2 PLD3 chr19:40883693 3'AG 40883693 Downstream 18bp
chr19 40883710 40883710 1 + C T COAD 40883722 + 40883702 40883742 41 GTGGTCCCCGCGGATGAGGCCCAGGCTCGAATCCCATATGC GTGGTCCCTGCGGATGAGGCCCAGGCTCGAATCCCATATGC < 41bp 1 0.481993169237879 1 0.356693178415298 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40883722 chr19:40883710 synonymous SNV . 0 9 hm5C_associated_SNPs_21010 0 0 1 0 2 PLD3 chr19:40883792 5'GT 40883792 Upstream 83bp
chr19 40883710 40883710 1 + C T COAD 40883723 + 40883703 40883743 41 TGGTCCCCGCGGATGAGGCCCAGGCTCGAATCCCATATGCC TGGTCCCTGCGGATGAGGCCCAGGCTCGAATCCCATATGCC < 41bp 1 0.370856387276075 1 0.450406938791275 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40883723 chr19:40883710 synonymous SNV . 0 8 hm5C_associated_SNPs_21011 0 0 1 0 2 PLD3 chr19:40883693 3'AG 40883693 Downstream 18bp
chr19 40883710 40883710 1 + C T COAD 40883723 + 40883703 40883743 41 TGGTCCCCGCGGATGAGGCCCAGGCTCGAATCCCATATGCC TGGTCCCTGCGGATGAGGCCCAGGCTCGAATCCCATATGCC < 41bp 1 0.370856387276075 1 0.450406938791275 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40883723 chr19:40883710 synonymous SNV . 0 8 hm5C_associated_SNPs_21011 0 0 1 0 2 PLD3 chr19:40883792 5'GT 40883792 Upstream 83bp
chr19 13054434 13054434 1 + C T COAD 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGTGTAAC < 41bp 1 0.577656846599707 1 0.646363377571106 experiment 0.844686306800585 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054434 synonymous SNV . 0 36 hm5C_associated_SNPs_21012 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 84bp
chr19 13054434 13054434 1 + C T COAD 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGTGTAAC < 41bp 1 0.577656846599707 1 0.646363377571106 experiment 0.844686306800585 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054434 synonymous SNV . 0 36 hm5C_associated_SNPs_21012 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 10bp
chr19 13054434 13054434 1 + C T COAD 13054427 + 13054407 13054447 41 TGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA TGAGGAGTTTGGCAACGAGACGTGGGGTGTAACAAAGGTGA < 41bp 1 0.685814459330005 1 0.360713005065918 experiment 0.628371081339989 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054427 chr19:13054434 synonymous SNV . 0 28 hm5C_associated_SNPs_21013 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 84bp
chr19 13054434 13054434 1 + C T COAD 13054427 + 13054407 13054447 41 TGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA TGAGGAGTTTGGCAACGAGACGTGGGGTGTAACAAAGGTGA < 41bp 1 0.685814459330005 1 0.360713005065918 experiment 0.628371081339989 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054427 chr19:13054434 synonymous SNV . 0 28 hm5C_associated_SNPs_21013 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 10bp
chr12 112229168 112229168 1 + C T COAD 112229155 + 112229135 112229175 41 ACATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATT ACATTGTGCCTGGATTTGGCCCCACGGCTGGGGTCGCCATT < 41bp 1 0.129495024665549 1 0.027579128742218 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229155 chr12:112229168 nonsynonymous SNV 0.169 2 34 hm5C_associated_SNPs_21014 0 0 1 0 2 ALDH2 chr12:112229110 3'AG 112229110 Downstream 59bp
chr12 112229168 112229168 1 + C T COAD 112229155 + 112229135 112229175 41 ACATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATT ACATTGTGCCTGGATTTGGCCCCACGGCTGGGGTCGCCATT < 41bp 1 0.129495024665549 1 0.027579128742218 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human protein_coding chr12:112229155 chr12:112229168 nonsynonymous SNV 0.169 2 34 hm5C_associated_SNPs_21014 0 0 1 0 2 ALDH2 chr12:112229223 5'GT 112229223 Upstream 56bp
chr12 112229168 112229168 1 + C T COAD 112229156 + 112229136 112229176 41 CATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTG CATTGTGCCTGGATTTGGCCCCACGGCTGGGGTCGCCATTG < 41bp 1 0.298295215756612 1 0.0642690062522888 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229156 chr12:112229168 nonsynonymous SNV 0.169 2 33 hm5C_associated_SNPs_21015 0 0 1 0 2 ALDH2 chr12:112229110 3'AG 112229110 Downstream 59bp
chr12 112229168 112229168 1 + C T COAD 112229156 + 112229136 112229176 41 CATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTG CATTGTGCCTGGATTTGGCCCCACGGCTGGGGTCGCCATTG < 41bp 1 0.298295215756612 1 0.0642690062522888 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human protein_coding chr12:112229156 chr12:112229168 nonsynonymous SNV 0.169 2 33 hm5C_associated_SNPs_21015 0 0 1 0 2 ALDH2 chr12:112229223 5'GT 112229223 Upstream 56bp
chr12 112229168 112229168 1 + C T COAD 112229157 + 112229137 112229177 41 ATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTGC ATTGTGCCTGGATTTGGCCCCACGGCTGGGGTCGCCATTGC < 41bp 1 0.77813883100856 1 0.432345032691956 experiment 0.443722337982881 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229157 chr12:112229168 nonsynonymous SNV 0.169 2 32 hm5C_associated_SNPs_21016 0 0 1 0 2 ALDH2 chr12:112229110 3'AG 112229110 Downstream 59bp
chr12 112229168 112229168 1 + C T COAD 112229157 + 112229137 112229177 41 ATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTGC ATTGTGCCTGGATTTGGCCCCACGGCTGGGGTCGCCATTGC < 41bp 1 0.77813883100856 1 0.432345032691956 experiment 0.443722337982881 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human protein_coding chr12:112229157 chr12:112229168 nonsynonymous SNV 0.169 2 32 hm5C_associated_SNPs_21016 0 0 1 0 2 ALDH2 chr12:112229223 5'GT 112229223 Upstream 56bp
chr12 112229168 112229168 1 + C T COAD 112229169 + 112229149 112229189 41 TTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGGA TTTGGCCCCACGGCTGGGGTCGCCATTGCCTCCCATGAGGA < 41bp 1 0.796953964723484 1 0.774539232254028 experiment 0.406092070553032 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229169 chr12:112229168 nonsynonymous SNV 0.169 2 20 hm5C_associated_SNPs_21017 0 0 1 0 2 ALDH2 chr12:112229110 3'AG 112229110 Downstream 59bp
chr12 112229168 112229168 1 + C T COAD 112229169 + 112229149 112229189 41 TTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGGA TTTGGCCCCACGGCTGGGGTCGCCATTGCCTCCCATGAGGA < 41bp 1 0.796953964723484 1 0.774539232254028 experiment 0.406092070553032 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human protein_coding chr12:112229169 chr12:112229168 nonsynonymous SNV 0.169 2 20 hm5C_associated_SNPs_21017 0 0 1 0 2 ALDH2 chr12:112229223 5'GT 112229223 Upstream 56bp
chr20 44673678 44673678 1 + G A COAD 44673677 + 44673657 44673697 41 TCTCCATGGGTAATTGTCATCGGATCCTTCTTCTCCACCTG TCTCCATGGGTAATTGTCATCAGATCCTTCTTCTCCACCTG < 41bp 1 0.500217797052004 1 0.580166399478912 experiment 0.999564405895991 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44673677 chr20:44673678 nonsynonymous SNV 0.976 5 22 hm5C_associated_SNPs_21018 0 0 0 0 1 SLC12A5 chr20:44673605 3'AG 44673605 Downstream 74bp
chr2 74315075 74315075 1 + G A COAD 74315067 + 74315047 74315087 41 CTCATCCTGGCCTGGGAGGGCATTCCCCGTAGCCTCGGAGA CTCATCCTGGCCTGGGAGGGCATTCCCCATAGCCTCGGAGA < 41bp 1 0.0241474503354726 1 0.0900512039661407 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74315067 chr2:74315075 nonsynonymous SNV 0.997 1 29 hm5C_associated_SNPs_21019 0 0 1 0 1 TET3 chr2:74315165 5'GT 74315165 Upstream 91bp
chr17 4923886 4923886 1 + C T COAD 4923870 + 4923850 4923890 41 TGGAACGGGAACGAGGGGTCCCCCCACCCCCAGGACCGCCC TGGAACGGGAACGAGGGGTCCCCCCACCCCCAGGACTGCCC < 41bp 1 0.111662064466374 1 0.067194938659668 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4923870 chr17:4923886 nonsynonymous SNV 0.949 1 37 hm5C_associated_SNPs_21020 0 0 1 0 2 KIF1C chr17:4923787 3'AG 4923787 Downstream 100bp
chr17 4923886 4923886 1 + C T COAD 4923870 + 4923850 4923890 41 TGGAACGGGAACGAGGGGTCCCCCCACCCCCAGGACCGCCC TGGAACGGGAACGAGGGGTCCCCCCACCCCCAGGACTGCCC < 41bp 1 0.111662064466374 1 0.067194938659668 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4923870 chr17:4923886 nonsynonymous SNV 0.949 1 37 hm5C_associated_SNPs_21020 0 0 1 0 2 KIF1C chr17:4923973 5'GT 4923973 Upstream 88bp
chr16 57171187 57171187 1 + C T COAD 57171175 + 57171155 57171195 41 CCGGTTTGCGGCCCAGGCCACACAACAGCGGACGGCCACGG CCGGTTTGCGGCCCAGGCCACACAACAGCGGATGGCCACGG < 41bp 1 0.636298487921362 1 0.233324527740479 experiment 0.727403024157276 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57171175 chr16:57171187 nonsynonymous SNV 0.749 0 33 hm5C_associated_SNPs_21021 0 0 1 0 1 CPNE2 chr16:57171194 5'GT 57171194 Upstream 8bp
chr1 40424484 40424484 1 + C T COAD 40424495 + 40424475 40424515 41 TGCCTGGGTCGCCTTATGCCCTGGTGAGTAGAATATGCCCC TGCCTGGGTTGCCTTATGCCCTGGTGAGTAGAATATGCCCC < 41bp 1 0.736204531857135 1 0.245765626430511 experiment 0.527590936285729 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40424495 chr1:40424484 nonsynonymous SNV 0.995 5 10 hm5C_associated_SNPs_21022 0 0 0 0 1 MFSD2A chr1:40424497 5'GT 40424497 Upstream 14bp
chr17 4859401 4859401 1 + G A COAD 4859382 + 4859362 4859402 41 GCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGT GCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGAT < 41bp 1 0.512370927814856 1 0.0810806453227997 experiment 0.975258144370288 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859382 chr17:4859401 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_21024 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 40bp
chr17 4859401 4859401 1 + G A COAD 4859382 + 4859362 4859402 41 GCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGT GCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGAT < 41bp 1 0.512370927814856 1 0.0810806453227997 experiment 0.975258144370288 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859382 chr17:4859401 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_21024 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 38bp
chr17 4859401 4859401 1 + G A COAD 4859385 + 4859365 4859405 41 GTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAA GTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGATCAA < 41bp 1 0.439739992267118 1 0.135647833347321 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859385 chr17:4859401 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_21025 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 40bp
chr17 4859401 4859401 1 + G A COAD 4859385 + 4859365 4859405 41 GTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAA GTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGATCAA < 41bp 1 0.439739992267118 1 0.135647833347321 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859385 chr17:4859401 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_21025 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 38bp
chr17 4859401 4859401 1 + G A COAD 4859389 + 4859369 4859409 41 AGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAG AGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGATCAACCAG < 41bp 1 0.775876885208205 1 0.575413227081299 experiment 0.448246229583591 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859389 chr17:4859401 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_21026 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 40bp
chr17 4859401 4859401 1 + G A COAD 4859389 + 4859369 4859409 41 AGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAG AGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGATCAACCAG < 41bp 1 0.775876885208205 1 0.575413227081299 experiment 0.448246229583591 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859389 chr17:4859401 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_21026 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 38bp
chr17 4859401 4859401 1 + G A COAD 4859392 + 4859372 4859412 41 AGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAGATC AGAAGGCCTGCAACTGTCTGCTGCTGAAGATCAACCAGATC < 41bp 1 0.416857295537955 1 0.202319979667664 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859392 chr17:4859401 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_21027 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 40bp
chr17 4859401 4859401 1 + G A COAD 4859392 + 4859372 4859412 41 AGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAGATC AGAAGGCCTGCAACTGTCTGCTGCTGAAGATCAACCAGATC < 41bp 1 0.416857295537955 1 0.202319979667664 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859392 chr17:4859401 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_21027 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 38bp
chr17 4859401 4859401 1 + G A COAD 4859403 + 4859383 4859423 41 AACTGTCTGCTGCTGAAGGTCAACCAGATCGGCTCGGTGAC AACTGTCTGCTGCTGAAGATCAACCAGATCGGCTCGGTGAC < 41bp 1 0.487378685846739 1 0.338927328586578 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859403 chr17:4859401 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_21028 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 40bp
chr17 4859401 4859401 1 + G A COAD 4859403 + 4859383 4859423 41 AACTGTCTGCTGCTGAAGGTCAACCAGATCGGCTCGGTGAC AACTGTCTGCTGCTGAAGATCAACCAGATCGGCTCGGTGAC < 41bp 1 0.487378685846739 1 0.338927328586578 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859403 chr17:4859401 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_21028 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 38bp
chr16 56792470 56792470 1 + G A COAD 56792462 + 56792442 56792482 41 TCACATAGGTCAGTTCTCCTCGGGTCTCGGGGACTTGACAT TCACATAGGTCAGTTCTCCTCGGGTCTCAGGGACTTGACAT < 41bp 1 0.767086105323765 1 0.922167897224426 experiment 0.46582778935247 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP93 ENSG00000102900 CDS Human protein_coding chr16:56792462 chr16:56792470 nonsynonymous SNV 0.918 1 29 hm5C_associated_SNPs_21029 0 0 1 0 2 NUP93 chr16:56792450 3'AG 56792450 Downstream 21bp
chr16 56792470 56792470 1 + G A COAD 56792462 + 56792442 56792482 41 TCACATAGGTCAGTTCTCCTCGGGTCTCGGGGACTTGACAT TCACATAGGTCAGTTCTCCTCGGGTCTCAGGGACTTGACAT < 41bp 1 0.767086105323765 1 0.922167897224426 experiment 0.46582778935247 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP93 ENSG00000102900 CDS Human protein_coding chr16:56792462 chr16:56792470 nonsynonymous SNV 0.918 1 29 hm5C_associated_SNPs_21029 0 0 1 0 2 NUP93 chr16:56792567 5'GT 56792567 Upstream 98bp
chr9 131830103 131830103 1 + C T COAD 131830119 + 131830099 131830139 41 CCTGCGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGG CCTGTGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGG < 41bp 1 0.203628421906195 1 0.114457696676254 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830119 chr9:131830103 nonsynonymous SNV 0.988 4 5 hm5C_associated_SNPs_21030 0 0 1 0 2 MIGA2 chr9:131830052 3'AG 131830052 Downstream 52bp
chr9 131830103 131830103 1 + C T COAD 131830119 + 131830099 131830139 41 CCTGCGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGG CCTGTGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGG < 41bp 1 0.203628421906195 1 0.114457696676254 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830119 chr9:131830103 nonsynonymous SNV 0.988 4 5 hm5C_associated_SNPs_21030 0 0 1 0 2 MIGA2 chr9:131830150 5'GT 131830150 Upstream 48bp
chr9 131830103 131830103 1 + C T COAD 131830120 + 131830100 131830140 41 CTGCGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGGA CTGTGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGGA < 41bp 1 0.390649495558351 1 0.221457451581955 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830120 chr9:131830103 nonsynonymous SNV 0.988 4 4 hm5C_associated_SNPs_21031 0 0 1 0 2 MIGA2 chr9:131830052 3'AG 131830052 Downstream 52bp
chr9 131830103 131830103 1 + C T COAD 131830120 + 131830100 131830140 41 CTGCGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGGA CTGTGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGGA < 41bp 1 0.390649495558351 1 0.221457451581955 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830120 chr9:131830103 nonsynonymous SNV 0.988 4 4 hm5C_associated_SNPs_21031 0 0 1 0 2 MIGA2 chr9:131830150 5'GT 131830150 Upstream 48bp
chr5 176083806 176083806 1 + G A COAD 176083814 + 176083794 176083834 41 TTCATGGGCATCGCCCTCCTCCAGGTACCCTTGTGGCCCCA TTCATGGGCATCACCCTCCTCCAGGTACCCTTGTGGCCCCA < 41bp 1 0.649080559064239 1 0.921611070632935 experiment 0.701838881871522 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176083814 chr5:176083806 nonsynonymous SNV 0.839 4 13 hm5C_associated_SNPs_21032 0 0 1 0 1 TSPAN17 chr5:176083817 5'GT 176083817 Upstream 12bp
chr7 150761825 150761825 1 + T C COAD 150761806 + 150761786 150761826 41 GCCAGCGAGGCTGAGGGGGCCCGGGCTCTCACTCAGCCGTC GCCAGCGAGGCTGAGGGGGCCCGGGCTCTCACTCAGCCGCC < 41bp 1 0.561524691885148 1 0.50299471616745 experiment 0.876950616229704 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150761806 chr7:150761825 nonsynonymous SNV 0.001 0 40 hm5C_associated_SNPs_21033 0 0 1 0 1 SLC4A2 chr7:150761854 5'GT 150761854 Upstream 30bp
chr10 43289388 43289388 1 + C T COAD 43289408 + 43289388 43289428 41 CGCTGTTTTCTGATTCCAAGCCACTTGGGTCAGAGGATATA TGCTGTTTTCTGATTCCAAGCCACTTGGGTCAGAGGATATA < 41bp 1 0.120987324027558 1 0.0545578896999359 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMS1 ENSG00000165733 CDS Human protein_coding chr10:43289408 chr10:43289388 nonsynonymous SNV 0.503 1 1 hm5C_associated_SNPs_21034 0 0 1 0 1 BMS1 chr10:43289300 3'AG 43289300 Downstream 89bp
chr16 29993194 29993194 1 + G A COAD 29993182 + 29993162 29993202 41 CCCTCCTGTGACTTTCAGGTCTGAGTACTTCCGGAATTTTG CCCTCCTGTGACTTTCAGGTCTGAGTACTTCCAGAATTTTG < 41bp 1 0.311925939726053 1 0.25924351811409 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29993182 chr16:29993194 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_21035 0 0 1 0 2 TAOK2 chr16:29993180 3'AG 29993180 Downstream 15bp
chr16 29993194 29993194 1 + G A COAD 29993182 + 29993162 29993202 41 CCCTCCTGTGACTTTCAGGTCTGAGTACTTCCGGAATTTTG CCCTCCTGTGACTTTCAGGTCTGAGTACTTCCAGAATTTTG < 41bp 1 0.311925939726053 1 0.25924351811409 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29993182 chr16:29993194 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_21035 0 0 1 0 2 TAOK2 chr16:29993261 5'GT 29993261 Upstream 68bp
chr21 44189193 44189193 1 + A C COAD 44189185 + 44189165 44189205 41 CTGTGGCACCGTTCATGGACCGAGACAAAGTGACCAAGGCC CTGTGGCACCGTTCATGGACCGAGACAACGTGACCAAGGCC < 41bp 1 0.79013992375943 1 0.459311723709106 experiment 0.419720152481141 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDE9A ENSG00000160191 CDS Human protein_coding chr21:44189185 chr21:44189193 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_21037 0 0 0 0 2 PDE9A chr21:44189137 3'AG 44189137 Downstream 57bp
chr21 44189193 44189193 1 + A C COAD 44189185 + 44189165 44189205 41 CTGTGGCACCGTTCATGGACCGAGACAAAGTGACCAAGGCC CTGTGGCACCGTTCATGGACCGAGACAACGTGACCAAGGCC < 41bp 1 0.79013992375943 1 0.459311723709106 experiment 0.419720152481141 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDE9A ENSG00000160191 CDS Human protein_coding chr21:44189185 chr21:44189193 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_21037 0 0 0 0 2 PDE9A chr21:44189265 5'GT 44189265 Upstream 73bp
chr7 4824629 4824629 1 + G A COAD 4824610 + 4824590 4824630 41 CCTCTGCCGGCCGCCTGCTGCCGCCCCGGGAGCGGCTTCGG CCTCTGCCGGCCGCCTGCTGCCGCCCCGGGAGCGGCTTCAG < 41bp 1 0.180158061336505 1 0.217550188302994 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824610 chr7:4824629 nonsynonymous SNV 0.998 3 40 hm5C_associated_SNPs_21038 2 0 1 0 2 AP5Z1 chr7:4824539 3'AG 4824539 Downstream 91bp
chr7 4824629 4824629 1 + G A COAD 4824610 + 4824590 4824630 41 CCTCTGCCGGCCGCCTGCTGCCGCCCCGGGAGCGGCTTCGG CCTCTGCCGGCCGCCTGCTGCCGCCCCGGGAGCGGCTTCAG < 41bp 1 0.180158061336505 1 0.217550188302994 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824610 chr7:4824629 nonsynonymous SNV 0.998 3 40 hm5C_associated_SNPs_21038 2 0 1 0 2 AP5Z1 chr7:4824679 5'GT 4824679 Upstream 51bp
chr19 50753904 50753904 1 + C T COAD 50753921 + 50753901 50753941 41 CTGCGGGATCAGGCCGACTTCAGTGTTCTCCACTACGCGGG CTGTGGGATCAGGCCGACTTCAGTGTTCTCCACTACGCGGG < 41bp 1 0.665564016097385 1 0.555975437164307 experiment 0.66887196780523 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50753921 chr19:50753904 nonsynonymous SNV 0.998 4 4 hm5C_associated_SNPs_21039 0 0 0 0 1 MYH14 chr19:50753945 5'GT 50753945 Upstream 42bp
chr9 96026308 96026308 1 + C T COAD 96026292 + 96026272 96026312 41 TCGACTTGGACGGGGACGCACCCGATGAAATTGCCACGTAT TCGACTTGGACGGGGACGCACCCGATGAAATTGCCATGTAT < 41bp 1 0.435376478654015 1 0.468665450811386 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WNK2 ENSG00000165238 CDS Human protein_coding chr9:96026292 chr9:96026308 nonsynonymous SNV 0.129 4 37 hm5C_associated_SNPs_21040 0 0 1 0 1 WNK2 chr9:96026315 5'GT 96026315 Upstream 8bp
chr5 151183531 151183531 1 + G A COAD 151183550 + 151183530 151183570 41 CGCCTTCGGGGACCTGGAGGCCCTCGAGGTGGGCTGGGTGG CACCTTCGGGGACCTGGAGGCCCTCGAGGTGGGCTGGGTGG < 41bp 1 0.314315508520506 1 0.451910495758057 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control G3BP1 ENSG00000145907 CDS Human protein_coding chr5:151183550 chr5:151183531 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_21041 0 0 1 0 1 G3BP1 chr5:151183446 3'AG 151183446 Downstream 86bp
chr11 252542 252542 1 + C T COAD 252522 + 252502 252542 41 CAGATCAAGGGAATGAAGGACCGCCTGGAGTTCTGGTGCAC CAGATCAAGGGAATGAAGGACCGCCTGGAGTTCTGGTGCAT < 41bp 1 0.157428248276569 1 0.216649830341339 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMD13 ENSG00000185627 CDS Human protein_coding chr11:252522 chr11:252542 nonsynonymous SNV 0.730 2 41 hm5C_associated_SNPs_21042 0 0 1 0 1 PSMD13 chr11:252505 3'AG 252505 Downstream 38bp
chr11 252542 252542 1 + C T COAD 252540 + 252520 252560 41 GACCGCCTGGAGTTCTGGTGCACGGATGTGAAGAGCATGGA GACCGCCTGGAGTTCTGGTGCATGGATGTGAAGAGCATGGA < 41bp 1 0.584686128768553 1 0.0806431174278259 experiment 0.830627742462894 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMD13 ENSG00000185627 CDS Human protein_coding chr11:252540 chr11:252542 nonsynonymous SNV 0.730 2 23 hm5C_associated_SNPs_21043 0 0 1 0 1 PSMD13 chr11:252505 3'AG 252505 Downstream 38bp
chr19 14153385 14153385 1 + G A COAD 14153384 + 14153364 14153404 41 AAAGAAGAGGATTTGTGGGGCGAGTGGAGCCCCATTTTGTC AAAGAAGAGGATTTGTGGGGCAAGTGGAGCCCCATTTTGTC < 41bp 1 0.282762824227795 1 0.411930561065674 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control IL27RA ENSG00000104998 CDS Human protein_coding chr19:14153384 chr19:14153385 nonsynonymous SNV 0.707 1 22 hm5C_associated_SNPs_21044 0 0 0 0 1 IL27RA chr19:14153424 5'GT 14153424 Upstream 40bp
chr19 14153385 14153385 1 + G A COAD 14153393 + 14153373 14153413 41 GATTTGTGGGGCGAGTGGAGCCCCATTTTGTCCTTCCAGAC GATTTGTGGGGCAAGTGGAGCCCCATTTTGTCCTTCCAGAC < 41bp 1 0.393260691172067 1 0.16132190823555 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control IL27RA ENSG00000104998 CDS Human protein_coding chr19:14153393 chr19:14153385 nonsynonymous SNV 0.707 1 13 hm5C_associated_SNPs_21045 0 0 0 0 1 IL27RA chr19:14153424 5'GT 14153424 Upstream 40bp
chr19 14153385 14153385 1 + G A COAD 14153394 + 14153374 14153414 41 ATTTGTGGGGCGAGTGGAGCCCCATTTTGTCCTTCCAGACA ATTTGTGGGGCAAGTGGAGCCCCATTTTGTCCTTCCAGACA < 41bp 1 0.197076127125055 1 0.156873673200607 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control IL27RA ENSG00000104998 CDS Human protein_coding chr19:14153394 chr19:14153385 nonsynonymous SNV 0.707 1 12 hm5C_associated_SNPs_21046 0 0 0 0 1 IL27RA chr19:14153424 5'GT 14153424 Upstream 40bp
chr19 14153385 14153385 1 + G A COAD 14153395 + 14153375 14153415 41 TTTGTGGGGCGAGTGGAGCCCCATTTTGTCCTTCCAGACAC TTTGTGGGGCAAGTGGAGCCCCATTTTGTCCTTCCAGACAC < 41bp 1 0.161969668501273 1 0.0441607534885406 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control IL27RA ENSG00000104998 CDS Human protein_coding chr19:14153395 chr19:14153385 nonsynonymous SNV 0.707 1 11 hm5C_associated_SNPs_21047 0 0 0 0 1 IL27RA chr19:14153424 5'GT 14153424 Upstream 40bp
chr19 14153385 14153385 1 + G A COAD 14153396 + 14153376 14153416 41 TTGTGGGGCGAGTGGAGCCCCATTTTGTCCTTCCAGACACC TTGTGGGGCAAGTGGAGCCCCATTTTGTCCTTCCAGACACC < 41bp 1 0.0603075687963875 1 0.0561413168907166 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control IL27RA ENSG00000104998 CDS Human protein_coding chr19:14153396 chr19:14153385 nonsynonymous SNV 0.707 1 10 hm5C_associated_SNPs_21048 0 0 0 0 1 IL27RA chr19:14153424 5'GT 14153424 Upstream 40bp
chr16 56501908 56501908 1 + T A COAD 56501910 + 56501890 56501930 41 TTGAAGAAAGTTCTGAAATTCTCCTGAAGGAGTTTCTTAAG TTGAAGAAAGTTCTGAAAATCTCCTGAAGGAGTTTCTTAAG < 41bp 1 0.608562684413246 1 0.906788408756256 experiment 0.782874631173508 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGFOD1 ENSG00000087263 CDS Human protein_coding chr16:56501910 chr16:56501908 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_21050 0 0 1 0 2 OGFOD1 chr16:56501817 3'AG 56501817 Downstream 92bp
chr16 56501908 56501908 1 + T A COAD 56501910 + 56501890 56501930 41 TTGAAGAAAGTTCTGAAATTCTCCTGAAGGAGTTTCTTAAG TTGAAGAAAGTTCTGAAAATCTCCTGAAGGAGTTTCTTAAG < 41bp 1 0.608562684413246 1 0.906788408756256 experiment 0.782874631173508 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGFOD1 ENSG00000087263 CDS Human protein_coding chr16:56501910 chr16:56501908 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_21050 0 0 1 0 2 OGFOD1 chr16:56501930 5'GT 56501930 Upstream 23bp
chr19 14153416 14153416 1 + C T COAD 14153396 + 14153376 14153416 41 TTGTGGGGCGAGTGGAGCCCCATTTTGTCCTTCCAGACACC TTGTGGGGCGAGTGGAGCCCCATTTTGTCCTTCCAGACACT < 41bp 1 0.0593762224868444 1 0.0562309920787811 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control IL27RA ENSG00000104998 CDS Human protein_coding chr19:14153396 chr19:14153416 nonsynonymous SNV 0.012 0 41 hm5C_associated_SNPs_21051 0 0 0 0 1 IL27RA chr19:14153424 5'GT 14153424 Upstream 9bp
chrX 70360552 70360552 1 + G A COAD 70360532 + 70360512 70360552 41 ACCCATGATAAGTACCATGACTCCAATGAGTGCCCAGGGCG ACCCATGATAAGTACCATGACTCCAATGAGTGCCCAGGGCA < 41bp 1 0.747925008557113 1 0.902923047542572 experiment 0.504149982885775 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout MED12 ENSG00000184634 CDS Human protein_coding chrX:70360532 chrX:70360552 nonsynonymous SNV 0.995 0 41 hm5C_associated_SNPs_21053 0 0 1 0 1 MED12 chrX:70360485 3'AG 70360485 Downstream 68bp
chr3 66430821 66430821 1 - C T COAD 66430812 - 66430792 66430832 41 GTCCAGAGCGCGCGGAAGCCCAGTACTTGCTTGTTTCCAAT GTCCAGAGCGCACGGAAGCCCAGTACTTGCTTGTTTCCAAT < 41bp 1 0.480578340439052 1 0.22758537530899 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430812 chr3:66430821 nonsynonymous SNV 0.000 0 12 hm5C_associated_SNPs_21054 0 0 0 0 1 LRIG1 chr3:66430913 3'AG 66430913 Downstream 93bp
chr19 4493761 4493761 1 + C T COAD 4493768 + 4493748 4493788 41 GCCAAGCCTGAGCCGGTGGCCATGGCGCGGTCGGCGTCCTC GCCAAGCCTGAGCTGGTGGCCATGGCGCGGTCGGCGTCCTC < 41bp 1 0.396870204314031 1 0.390543162822723 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4493768 chr19:4493761 nonsynonymous SNV 0.021 0 14 hm5C_associated_SNPs_21057 0 0 1 0 2 HDGFL2 chr19:4493700 3'AG 4493700 Downstream 62bp
chr19 4493761 4493761 1 + C T COAD 4493768 + 4493748 4493788 41 GCCAAGCCTGAGCCGGTGGCCATGGCGCGGTCGGCGTCCTC GCCAAGCCTGAGCTGGTGGCCATGGCGCGGTCGGCGTCCTC < 41bp 1 0.396870204314031 1 0.390543162822723 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4493768 chr19:4493761 nonsynonymous SNV 0.021 0 14 hm5C_associated_SNPs_21057 0 0 1 0 2 HDGFL2 chr19:4493859 5'GT 4493859 Upstream 99bp
chr1 26136187 26136187 1 + T C COAD 26136177 + 26136157 26136197 41 GATCCCCTTCCCCACAGGATCCATGCCGAGTTCCAGCTCAG GATCCCCTTCCCCACAGGATCCATGCCGAGCTCCAGCTCAG < 41bp 1 0.128509730333239 1 0.0390692353248596 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136177 chr1:26136187 nonsynonymous SNV 0.983 5 31 hm5C_associated_SNPs_21058 0 0 1 0 1 SELENON chr1:26136174 3'AG 26136174 Downstream 14bp
chr16 560768 560768 1 + G A COAD 560748 + 560728 560768 41 CCCGGCGTCAGAAGGAGCTCCTGTGCAAGATGGAGAGGGAG CCCGGCGTCAGAAGGAGCTCCTGTGCAAGATGGAGAGGGAA < 41bp 1 0.139461976833476 1 0.47238028049469 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:560748 chr16:560768 synonymous SNV . 0 41 hm5C_associated_SNPs_21060 0 0 1 0 1 RAB11FIP3 chr16:560800 5'GT 560800 Upstream 33bp
chr19 46887123 46887123 1 + G A COAD 46887105 + 46887085 46887125 41 CTCCTCAACATATTCGAGCTCAACGGTTTACCCTCGGAGAC CTCCTCAACATATTCGAGCTCAACGGTTTACCCTCGGAAAC < 41bp 1 0.566939323563152 1 0.114431500434875 experiment 0.866121352873696 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46887105 chr19:46887123 synonymous SNV . 0 39 hm5C_associated_SNPs_21062 0 0 1 0 3 PPP5C chr19:46887037 3'AG 46887037 Downstream 87bp
chr19 46887123 46887123 1 + G A COAD 46887105 + 46887085 46887125 41 CTCCTCAACATATTCGAGCTCAACGGTTTACCCTCGGAGAC CTCCTCAACATATTCGAGCTCAACGGTTTACCCTCGGAAAC < 41bp 1 0.566939323563152 1 0.114431500434875 experiment 0.866121352873696 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46887105 chr19:46887123 synonymous SNV . 0 39 hm5C_associated_SNPs_21062 0 0 1 0 3 PPP5C chr19:46887041 3'AG 46887041 Downstream 83bp
chr19 46887123 46887123 1 + G A COAD 46887105 + 46887085 46887125 41 CTCCTCAACATATTCGAGCTCAACGGTTTACCCTCGGAGAC CTCCTCAACATATTCGAGCTCAACGGTTTACCCTCGGAAAC < 41bp 1 0.566939323563152 1 0.114431500434875 experiment 0.866121352873696 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46887105 chr19:46887123 synonymous SNV . 0 39 hm5C_associated_SNPs_21062 0 0 1 0 3 PPP5C chr19:46887135 5'GT 46887135 Upstream 13bp
chr19 39948328 39948328 1 + G A COAD 39948343 + 39948323 39948363 41 GATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA GATGAATATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA < 41bp 1 0.265752361855078 1 0.173847705125809 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948343 chr19:39948328 synonymous SNV . 0 6 hm5C_associated_SNPs_21064 0 0 1 0 2 SUPT5H chr19:39948315 3'AG 39948315 Downstream 14bp
chr19 39948328 39948328 1 + G A COAD 39948343 + 39948323 39948363 41 GATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA GATGAATATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA < 41bp 1 0.265752361855078 1 0.173847705125809 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948343 chr19:39948328 synonymous SNV . 0 6 hm5C_associated_SNPs_21064 0 0 1 0 2 SUPT5H chr19:39948380 5'GT 39948380 Upstream 53bp
chr19 39948328 39948328 1 + G A COAD 39948344 + 39948324 39948364 41 ATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGAG ATGAATATGAGGACGAGGACCAGTGGGAGGATGGAGCAGAG < 41bp 1 0.506813531501027 1 0.241517126560211 experiment 0.986372936997946 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948344 chr19:39948328 synonymous SNV . 0 5 hm5C_associated_SNPs_21065 0 0 1 0 2 SUPT5H chr19:39948315 3'AG 39948315 Downstream 14bp
chr19 39948328 39948328 1 + G A COAD 39948344 + 39948324 39948364 41 ATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGAG ATGAATATGAGGACGAGGACCAGTGGGAGGATGGAGCAGAG < 41bp 1 0.506813531501027 1 0.241517126560211 experiment 0.986372936997946 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948344 chr19:39948328 synonymous SNV . 0 5 hm5C_associated_SNPs_21065 0 0 1 0 2 SUPT5H chr19:39948380 5'GT 39948380 Upstream 53bp
chr7 40102463 40102463 1 + G A COAD 40102465 + 40102445 40102485 41 TAATTACTTTATGGTACCGTCCACCTGAACTGCTACTGGGA TAATTACTTTATGGTACCATCCACCTGAACTGCTACTGGGA < 41bp 1 0.054628555742865 1 0.231039971113205 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:40102465 chr7:40102463 nonsynonymous SNV 0.997 3 19 hm5C_associated_SNPs_21066 0 0 1 0 2 CDK13 chr7:40102425 3'AG 40102425 Downstream 39bp
chr7 40102463 40102463 1 + G A COAD 40102465 + 40102445 40102485 41 TAATTACTTTATGGTACCGTCCACCTGAACTGCTACTGGGA TAATTACTTTATGGTACCATCCACCTGAACTGCTACTGGGA < 41bp 1 0.054628555742865 1 0.231039971113205 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:40102465 chr7:40102463 nonsynonymous SNV 0.997 3 19 hm5C_associated_SNPs_21066 0 0 1 0 2 CDK13 chr7:40102526 5'GT 40102526 Upstream 64bp
chr2 73477030 73477030 1 + G A COAD 73477026 + 73477006 73477046 41 ATGCCAGGTGTTTGAAGAGACCCAGATTGGAGGCGAGAGGT ATGCCAGGTGTTTGAAGAGACCCAAATTGGAGGCGAGAGGT < 41bp 1 0.634384957480044 1 0.53596431016922 experiment 0.731230085039913 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT7 ENSG00000135624 CDS Human protein_coding chr2:73477026 chr2:73477030 synonymous SNV . 0 25 hm5C_associated_SNPs_21067 0 0 1 0 2 CCT7 chr2:73476947 3'AG 73476947 Downstream 84bp
chr2 73477030 73477030 1 + G A COAD 73477026 + 73477006 73477046 41 ATGCCAGGTGTTTGAAGAGACCCAGATTGGAGGCGAGAGGT ATGCCAGGTGTTTGAAGAGACCCAAATTGGAGGCGAGAGGT < 41bp 1 0.634384957480044 1 0.53596431016922 experiment 0.731230085039913 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT7 ENSG00000135624 CDS Human protein_coding chr2:73477026 chr2:73477030 synonymous SNV . 0 25 hm5C_associated_SNPs_21067 0 0 1 0 2 CCT7 chr2:73477044 5'GT 73477044 Upstream 15bp
chr11 126215295 126215295 1 + G A COAD 126215278 + 126215258 126215298 41 GCTACCGGATGAAGGGAGACCATCTGCGAGTATACCTGCAC GCTACCGGATGAAGGGAGACCATCTGCGAGTATACCTACAC < 41bp 1 0.275698310126948 1 0.140413582324982 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DCPS ENSG00000110063 CDS Human protein_coding chr11:126215278 chr11:126215295 synonymous SNV . 0 38 hm5C_associated_SNPs_21068 0 0 1 0 1 DCPS chr11:126215242 3'AG 126215242 Downstream 54bp
chr11 61503230 61503230 1 + C T COAD 61503225 + 61503205 61503245 41 CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTGAGCG CCCAAGGATGCCCTGACTGACCTGATGGGTGATGCTGAGCG < 41bp 1 0.308497663031281 1 0.0694326758384705 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503225 chr11:61503230 nonsynonymous SNV 0.945 4 26 hm5C_associated_SNPs_21070 0 0 0 0 2 DAGLA chr11:61503211 3'AG 61503211 Downstream 20bp
chr11 61503230 61503230 1 + C T COAD 61503225 + 61503205 61503245 41 CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTGAGCG CCCAAGGATGCCCTGACTGACCTGATGGGTGATGCTGAGCG < 41bp 1 0.308497663031281 1 0.0694326758384705 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503225 chr11:61503230 nonsynonymous SNV 0.945 4 26 hm5C_associated_SNPs_21070 0 0 0 0 2 DAGLA chr11:61503288 5'GT 61503288 Upstream 59bp
chr19 4037381 4037381 1 + G A COAD 4037380 + 4037360 4037400 41 GCCTCGCCCCAGGCTCCTCTCGAAGATCCTGAGCGAGTGTG GCCTCGCCCCAGGCTCCTCTCAAAGATCCTGAGCGAGTGTG < 41bp 1 0.506254036679483 1 0.174300372600555 experiment 0.987491926641035 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PIAS4 ENSG00000105229 CDS Human protein_coding chr19:4037380 chr19:4037381 synonymous SNV . 0 22 hm5C_associated_SNPs_21075 0 0 1 0 1 PIAS4 chr19:4037372 3'AG 4037372 Downstream 10bp
chr12 56532018 56532018 1 + C T COAD 56531999 + 56531979 56532019 41 GAGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCG GAGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGTG < 41bp 1 0.0615347657234708 1 0.521020352840424 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56531999 chr12:56532018 nonsynonymous SNV 0.974 0 40 hm5C_associated_SNPs_21076 0 0 1 0 2 ESYT1 chr12:56531967 3'AG 56531967 Downstream 52bp
chr12 56532018 56532018 1 + C T COAD 56531999 + 56531979 56532019 41 GAGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCG GAGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGTG < 41bp 1 0.0615347657234708 1 0.521020352840424 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56531999 chr12:56532018 nonsynonymous SNV 0.974 0 40 hm5C_associated_SNPs_21076 0 0 1 0 2 ESYT1 chr12:56532056 5'GT 56532056 Upstream 39bp
chr12 56532018 56532018 1 + C T COAD 56532000 + 56531980 56532020 41 AGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCGT AGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGTGT < 41bp 1 0.502852179754615 1 0.540765821933746 experiment 0.99429564049077 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532000 chr12:56532018 nonsynonymous SNV 0.974 0 39 hm5C_associated_SNPs_21077 0 0 1 0 2 ESYT1 chr12:56531967 3'AG 56531967 Downstream 52bp
chr12 56532018 56532018 1 + C T COAD 56532000 + 56531980 56532020 41 AGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCGT AGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGTGT < 41bp 1 0.502852179754615 1 0.540765821933746 experiment 0.99429564049077 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532000 chr12:56532018 nonsynonymous SNV 0.974 0 39 hm5C_associated_SNPs_21077 0 0 1 0 2 ESYT1 chr12:56532056 5'GT 56532056 Upstream 39bp
chr19 3151799 3151799 1 + G A COAD 3151786 + 3151766 3151806 41 CTCCGCAGCCGCATGCCCACCACTGGCATCAACGAGTACTG CTCCGCAGCCGCATGCCCACCACTGGCATCAACAAGTACTG < 41bp 1 0.369162467765529 1 0.0591885149478912 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNA15 ENSG00000060558 CDS Human protein_coding chr19:3151786 chr19:3151799 nonsynonymous SNV 0.998 5 34 hm5C_associated_SNPs_21078 0 0 0 0 2 GNA15 chr19:3151705 3'AG 3151705 Downstream 95bp
chr19 3151799 3151799 1 + G A COAD 3151786 + 3151766 3151806 41 CTCCGCAGCCGCATGCCCACCACTGGCATCAACGAGTACTG CTCCGCAGCCGCATGCCCACCACTGGCATCAACAAGTACTG < 41bp 1 0.369162467765529 1 0.0591885149478912 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNA15 ENSG00000060558 CDS Human protein_coding chr19:3151786 chr19:3151799 nonsynonymous SNV 0.998 5 34 hm5C_associated_SNPs_21078 0 0 0 0 2 GNA15 chr19:3151833 5'GT 3151833 Upstream 35bp
chr12 101674904 101674904 1 + T G COAD 101674915 + 101674895 101674935 41 TTCTTACATTTGCTGAACGACTGGGGAATGTTAATATTGAT TTCTTACATGTGCTGAACGACTGGGGAATGTTAATATTGAT < 41bp 1 0.372653390918184 1 0.273505926132202 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101674915 chr12:101674904 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_21079 0 0 1 0 2 UTP20 chr12:101674894 3'AG 101674894 Downstream 11bp
chr12 101674904 101674904 1 + T G COAD 101674915 + 101674895 101674935 41 TTCTTACATTTGCTGAACGACTGGGGAATGTTAATATTGAT TTCTTACATGTGCTGAACGACTGGGGAATGTTAATATTGAT < 41bp 1 0.372653390918184 1 0.273505926132202 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101674915 chr12:101674904 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_21079 0 0 1 0 2 UTP20 chr12:101674974 5'GT 101674974 Upstream 71bp
chr12 112321465 112321465 1 + C T COAD 112321470 + 112321450 112321490 41 CTCCAAACACCACAGCCGGACTATCCCAAAGGATATGCGAA CTCCAAACACCACAGTCGGACTATCCCAAAGGATATGCGAA < 41bp 1 0.039787094541236 1 0.153089553117752 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPKAPK5 ENSG00000089022 CDS Human protein_coding chr12:112321470 chr12:112321465 synonymous SNV . 0 16 hm5C_associated_SNPs_21080 0 0 1 0 1 MAPKAPK5 chr12:112321385 3'AG 112321385 Downstream 81bp
chr22 31266628 31266628 1 + C T COAD 31266632 + 31266612 31266652 41 GAAGGTGGTGAATGAGCGGGCCACCCTCTTCCGCATCACAT GAAGGTGGTGAATGAGTGGGCCACCCTCTTCCGCATCACAT < 41bp 1 0.0564111538786829 1 0.1009401679039 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OSBP2 ENSG00000184792 CDS Human protein_coding chr22:31266632 chr22:31266628 nonsynonymous SNV 0.986 4 17 hm5C_associated_SNPs_21083 0 0 0 0 1 OSBP2 chr22:31266669 5'GT 31266669 Upstream 42bp
chr19 39911719 39911719 1 + G A COAD 39911718 + 39911698 39911738 41 CTGTGTCCTCCCCGCAGAGCCGGTGAAGGACCCTTATGTCA CTGTGTCCTCCCCGCAGAGCCAGTGAAGGACCCTTATGTCA < 41bp 1 0.285209219640567 1 0.488523125648499 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39911718 chr19:39911719 synonymous SNV . 0 22 hm5C_associated_SNPs_21084 0 0 1 0 2 PLEKHG2 chr19:39911715 3'AG 39911715 Downstream 5bp
chr19 39911719 39911719 1 + G A COAD 39911718 + 39911698 39911738 41 CTGTGTCCTCCCCGCAGAGCCGGTGAAGGACCCTTATGTCA CTGTGTCCTCCCCGCAGAGCCAGTGAAGGACCCTTATGTCA < 41bp 1 0.285209219640567 1 0.488523125648499 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39911718 chr19:39911719 synonymous SNV . 0 22 hm5C_associated_SNPs_21084 0 0 1 0 2 PLEKHG2 chr19:39911753 5'GT 39911753 Upstream 35bp
chr2 118582628 118582628 1 + A G COAD 118582619 + 118582599 118582639 41 CTTCTTTTCATCTTGTATGTCTGTGAAATACCACTATGAGT CTTCTTTTCATCTTGTATGTCTGTGAAATGCCACTATGAGT < 41bp 1 0.390476453675902 1 0.164324015378952 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118582619 chr2:118582628 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_21085 0 0 1 0 1 DDX18 chr2:118582677 5'GT 118582677 Upstream 50bp
chr7 5269320 5269320 1 + C T COAD 5269313 + 5269293 5269333 41 CTGCCCCTTAGTCACTCAGACATACGGCGCAGCTGCAGGAA CTGCCCCTTAGTCACTCAGACATACGGTGCAGCTGCAGGAA < 41bp 1 0.122744346055699 1 0.0646177232265472 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5269313 chr7:5269320 synonymous SNV . 0 28 hm5C_associated_SNPs_21086 0 0 1 0 3 WIPI2 chr7:5269239 3'AG 5269239 Downstream 82bp
chr7 5269320 5269320 1 + C T COAD 5269313 + 5269293 5269333 41 CTGCCCCTTAGTCACTCAGACATACGGCGCAGCTGCAGGAA CTGCCCCTTAGTCACTCAGACATACGGTGCAGCTGCAGGAA < 41bp 1 0.122744346055699 1 0.0646177232265472 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5269313 chr7:5269320 synonymous SNV . 0 28 hm5C_associated_SNPs_21086 0 0 1 0 3 WIPI2 chr7:5269336 5'GT 5269336 Upstream 17bp
chr7 5269320 5269320 1 + C T COAD 5269313 + 5269293 5269333 41 CTGCCCCTTAGTCACTCAGACATACGGCGCAGCTGCAGGAA CTGCCCCTTAGTCACTCAGACATACGGTGCAGCTGCAGGAA < 41bp 1 0.122744346055699 1 0.0646177232265472 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5269313 chr7:5269320 synonymous SNV . 0 28 hm5C_associated_SNPs_21086 0 0 1 0 3 WIPI2 chr7:5269369 5'GT 5269369 Upstream 50bp
chrX 150565810 150565810 1 + C T COAD 150565821 + 150565801 150565841 41 GGCGCTGAACGCACTGCAGCCTCCTGAGTTCAGGTAGCCCT GGCGCTGAATGCACTGCAGCCTCCTGAGTTCAGGTAGCCCT < 41bp 1 0.789032221002766 1 0.171735405921936 experiment 0.421935557994468 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VMA21 ENSG00000160131 CDS Human protein_coding chrX:150565821 chrX:150565810 synonymous SNV . 0 10 hm5C_associated_SNPs_21087 0 0 1 0 1 VMA21 chrX:150565833 5'GT 150565833 Upstream 24bp
chr2 36668428 36668428 1 + G A COAD 36668446 + 36668426 36668466 41 CCGCTGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATT CCACTGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATT < 41bp 1 0.663865056206047 1 0.713518142700195 experiment 0.672269887587907 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36668446 chr2:36668428 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_21089 0 0 1 0 1 CRIM1 chr2:36668401 3'AG 36668401 Downstream 28bp
chr2 36668428 36668428 1 + G A COAD 36668448 + 36668428 36668468 41 GCTGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATTCT ACTGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATTCT < 41bp 1 0.515288136804075 1 0.566323399543762 experiment 0.96942372639185 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36668448 chr2:36668428 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_21090 0 0 1 0 1 CRIM1 chr2:36668401 3'AG 36668401 Downstream 28bp
chr21 46888602 46888602 1 + A C COAD 46888598 + 46888578 46888618 41 TACGTGGACTGTGAGGAGTTCCAGAGAATGCCGCTTGCTCG TACGTGGACTGTGAGGAGTTCCAGCGAATGCCGCTTGCTCG < 41bp 1 0.120791370316417 1 0.561692655086517 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46888598 chr21:46888602 synonymous SNV . 0 25 hm5C_associated_SNPs_21091 0 0 1 0 1 COL18A1 chr21:46888700 5'GT 46888700 Upstream 99bp
chr1 22331997 22331997 1 + A G COAD 22331978 + 22331958 22331998 41 AAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCAT AAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCGT < 41bp 1 0.758956019287505 1 0.482559323310852 experiment 0.48208796142499 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331978 chr1:22331997 nonsynonymous SNV 0.028 0 40 hm5C_associated_SNPs_21092 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 58bp
chr1 22331997 22331997 1 + A G COAD 22331978 + 22331958 22331998 41 AAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCAT AAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCGT < 41bp 1 0.758956019287505 1 0.482559323310852 experiment 0.48208796142499 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331978 chr1:22331997 nonsynonymous SNV 0.028 0 40 hm5C_associated_SNPs_21092 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 41bp
chr1 22331997 22331997 1 + A G COAD 22331980 + 22331960 22332000 41 AAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCATCG AAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCGTCG < 41bp 1 0.548854185495008 1 0.200711905956268 experiment 0.902291629009984 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331980 chr1:22331997 nonsynonymous SNV 0.028 0 38 hm5C_associated_SNPs_21093 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 58bp
chr1 22331997 22331997 1 + A G COAD 22331980 + 22331960 22332000 41 AAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCATCG AAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCGTCG < 41bp 1 0.548854185495008 1 0.200711905956268 experiment 0.902291629009984 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331980 chr1:22331997 nonsynonymous SNV 0.028 0 38 hm5C_associated_SNPs_21093 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 41bp
chr1 22331997 22331997 1 + A G COAD 22331987 + 22331967 22332007 41 AGCTTCTACCACACGTGTGGCGGTAGCCTCATCGCCCCCGA AGCTTCTACCACACGTGTGGCGGTAGCCTCGTCGCCCCCGA < 41bp 1 0.760537882871165 1 0.636154234409332 experiment 0.47892423425767 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331987 chr1:22331997 nonsynonymous SNV 0.028 0 31 hm5C_associated_SNPs_21094 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 58bp
chr1 22331997 22331997 1 + A G COAD 22331987 + 22331967 22332007 41 AGCTTCTACCACACGTGTGGCGGTAGCCTCATCGCCCCCGA AGCTTCTACCACACGTGTGGCGGTAGCCTCGTCGCCCCCGA < 41bp 1 0.760537882871165 1 0.636154234409332 experiment 0.47892423425767 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331987 chr1:22331997 nonsynonymous SNV 0.028 0 31 hm5C_associated_SNPs_21094 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 41bp
chr1 22331997 22331997 1 + A G COAD 22331993 + 22331973 22332013 41 TACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGT TACCACACGTGTGGCGGTAGCCTCGTCGCCCCCGATTGGGT < 41bp 1 0.21359435555934 1 0.0776982605457306 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331993 chr1:22331997 nonsynonymous SNV 0.028 0 25 hm5C_associated_SNPs_21095 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 58bp
chr1 22331997 22331997 1 + A G COAD 22331993 + 22331973 22332013 41 TACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGT TACCACACGTGTGGCGGTAGCCTCGTCGCCCCCGATTGGGT < 41bp 1 0.21359435555934 1 0.0776982605457306 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331993 chr1:22331997 nonsynonymous SNV 0.028 0 25 hm5C_associated_SNPs_21095 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 41bp
chr1 22331997 22331997 1 + A G COAD 22331994 + 22331974 22332014 41 ACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTT ACCACACGTGTGGCGGTAGCCTCGTCGCCCCCGATTGGGTT < 41bp 1 0.776606350321687 1 0.176110863685608 experiment 0.446787299356627 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331994 chr1:22331997 nonsynonymous SNV 0.028 0 24 hm5C_associated_SNPs_21096 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 58bp
chr1 22331997 22331997 1 + A G COAD 22331994 + 22331974 22332014 41 ACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTT ACCACACGTGTGGCGGTAGCCTCGTCGCCCCCGATTGGGTT < 41bp 1 0.776606350321687 1 0.176110863685608 experiment 0.446787299356627 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331994 chr1:22331997 nonsynonymous SNV 0.028 0 24 hm5C_associated_SNPs_21096 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 41bp
chr1 22331997 22331997 1 + A G COAD 22331996 + 22331976 22332016 41 CACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGT CACACGTGTGGCGGTAGCCTCGTCGCCCCCGATTGGGTTGT < 41bp 1 0.435404680005316 1 0.291360974311829 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331996 chr1:22331997 nonsynonymous SNV 0.028 0 22 hm5C_associated_SNPs_21097 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 58bp
chr1 22331997 22331997 1 + A G COAD 22331996 + 22331976 22332016 41 CACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGT CACACGTGTGGCGGTAGCCTCGTCGCCCCCGATTGGGTTGT < 41bp 1 0.435404680005316 1 0.291360974311829 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331996 chr1:22331997 nonsynonymous SNV 0.028 0 22 hm5C_associated_SNPs_21097 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 41bp
chr1 22331997 22331997 1 + A G COAD 22331999 + 22331979 22332019 41 ACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGAC ACGTGTGGCGGTAGCCTCGTCGCCCCCGATTGGGTTGTGAC < 41bp 1 0.394736563015581 1 0.474165946245193 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331999 chr1:22331997 nonsynonymous SNV 0.028 0 19 hm5C_associated_SNPs_21098 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 58bp
chr1 22331997 22331997 1 + A G COAD 22331999 + 22331979 22332019 41 ACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGAC ACGTGTGGCGGTAGCCTCGTCGCCCCCGATTGGGTTGTGAC < 41bp 1 0.394736563015581 1 0.474165946245193 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331999 chr1:22331997 nonsynonymous SNV 0.028 0 19 hm5C_associated_SNPs_21098 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 41bp
chr1 22331997 22331997 1 + A G COAD 22332001 + 22331981 22332021 41 GTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTG GTGTGGCGGTAGCCTCGTCGCCCCCGATTGGGTTGTGACTG < 41bp 1 0.359043760247477 1 0.257616221904755 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332001 chr1:22331997 nonsynonymous SNV 0.028 0 17 hm5C_associated_SNPs_21099 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 58bp
chr1 22331997 22331997 1 + A G COAD 22332001 + 22331981 22332021 41 GTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTG GTGTGGCGGTAGCCTCGTCGCCCCCGATTGGGTTGTGACTG < 41bp 1 0.359043760247477 1 0.257616221904755 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332001 chr1:22331997 nonsynonymous SNV 0.028 0 17 hm5C_associated_SNPs_21099 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 41bp
chr1 22331997 22331997 1 + A G COAD 22332002 + 22331982 22332022 41 TGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGC TGTGGCGGTAGCCTCGTCGCCCCCGATTGGGTTGTGACTGC < 41bp 1 0.603362161684656 1 0.732857584953308 experiment 0.793275676630688 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332002 chr1:22331997 nonsynonymous SNV 0.028 0 16 hm5C_associated_SNPs_21100 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 58bp
chr1 22331997 22331997 1 + A G COAD 22332002 + 22331982 22332022 41 TGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGC TGTGGCGGTAGCCTCGTCGCCCCCGATTGGGTTGTGACTGC < 41bp 1 0.603362161684656 1 0.732857584953308 experiment 0.793275676630688 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332002 chr1:22331997 nonsynonymous SNV 0.028 0 16 hm5C_associated_SNPs_21100 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 41bp
chr1 22331997 22331997 1 + A G COAD 22332003 + 22331983 22332023 41 GTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCC GTGGCGGTAGCCTCGTCGCCCCCGATTGGGTTGTGACTGCC < 41bp 1 0.762506024804272 1 0.141188859939575 experiment 0.474987950391455 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332003 chr1:22331997 nonsynonymous SNV 0.028 0 15 hm5C_associated_SNPs_21101 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 58bp
chr1 22331997 22331997 1 + A G COAD 22332003 + 22331983 22332023 41 GTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCC GTGGCGGTAGCCTCGTCGCCCCCGATTGGGTTGTGACTGCC < 41bp 1 0.762506024804272 1 0.141188859939575 experiment 0.474987950391455 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332003 chr1:22331997 nonsynonymous SNV 0.028 0 15 hm5C_associated_SNPs_21101 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 41bp
chr1 22331997 22331997 1 + A G COAD 22332004 + 22331984 22332024 41 TGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCG TGGCGGTAGCCTCGTCGCCCCCGATTGGGTTGTGACTGCCG < 41bp 1 0.224103596850803 1 0.083147257566452 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332004 chr1:22331997 nonsynonymous SNV 0.028 0 14 hm5C_associated_SNPs_21102 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 58bp
chr1 22331997 22331997 1 + A G COAD 22332004 + 22331984 22332024 41 TGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCG TGGCGGTAGCCTCGTCGCCCCCGATTGGGTTGTGACTGCCG < 41bp 1 0.224103596850803 1 0.083147257566452 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332004 chr1:22331997 nonsynonymous SNV 0.028 0 14 hm5C_associated_SNPs_21102 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 41bp
chr1 22331997 22331997 1 + A G COAD 22332005 + 22331985 22332025 41 GGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGG GGCGGTAGCCTCGTCGCCCCCGATTGGGTTGTGACTGCCGG < 41bp 1 0.452735000697728 1 0.433496713638306 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332005 chr1:22331997 nonsynonymous SNV 0.028 0 13 hm5C_associated_SNPs_21103 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 58bp
chr1 22331997 22331997 1 + A G COAD 22332005 + 22331985 22332025 41 GGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGG GGCGGTAGCCTCGTCGCCCCCGATTGGGTTGTGACTGCCGG < 41bp 1 0.452735000697728 1 0.433496713638306 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332005 chr1:22331997 nonsynonymous SNV 0.028 0 13 hm5C_associated_SNPs_21103 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 41bp
chr3 38417643 38417643 1 + G A COAD 38417623 + 38417603 38417643 41 TGCAGCTTTAAAAATGGCTCCCTCATGAGAGAGAAGATCCG TGCAGCTTTAAAAATGGCTCCCTCATGAGAGAGAAGATCCA < 41bp 1 0.0560589754263469 1 0.0736116170883179 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XYLB ENSG00000093217 CDS Human protein_coding chr3:38417623 chr3:38417643 nonsynonymous SNV 0.430 5 41 hm5C_associated_SNPs_21104 0 0 1 0 2 XYLB chr3:38417608 3'AG 38417608 Downstream 36bp
chr3 38417643 38417643 1 + G A COAD 38417623 + 38417603 38417643 41 TGCAGCTTTAAAAATGGCTCCCTCATGAGAGAGAAGATCCG TGCAGCTTTAAAAATGGCTCCCTCATGAGAGAGAAGATCCA < 41bp 1 0.0560589754263469 1 0.0736116170883179 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XYLB ENSG00000093217 CDS Human protein_coding chr3:38417623 chr3:38417643 nonsynonymous SNV 0.430 5 41 hm5C_associated_SNPs_21104 0 0 1 0 2 XYLB chr3:38417723 5'GT 38417723 Upstream 81bp
chr16 90030983 90030983 1 + G A COAD 90030968 + 90030948 90030988 41 GTCTGTGTGCGCCGACTGCTCCGCGGTCTTCCACAGGTGGG GTCTGTGTGCGCCGACTGCTCCGCGGTCTTCCACAAGTGGG < 41bp 1 0.796014494989507 1 0.166559249162674 experiment 0.407971010020986 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90030968 chr16:90030983 nonsynonymous SNV 0.993 1 36 hm5C_associated_SNPs_21105 0 0 1 0 1 DEF8 chr16:90030983 5'GT 90030983 Upstream 1bp
chr15 100215617 100215617 1 + C T COAD 100215637 + 100215617 100215657 41 CACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGTC TACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGTC < 41bp 1 0.311373321025375 1 0.508222341537476 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEF2A ENSG00000068305 CDS Human protein_coding chr15:100215637 chr15:100215617 synonymous SNV . 0 1 hm5C_associated_SNPs_21106 0 0 1 0 2 MEF2A chr15:100215604 3'AG 100215604 Downstream 14bp
chr15 100215617 100215617 1 + C T COAD 100215637 + 100215617 100215657 41 CACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGTC TACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGTC < 41bp 1 0.311373321025375 1 0.508222341537476 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEF2A ENSG00000068305 CDS Human protein_coding chr15:100215637 chr15:100215617 synonymous SNV . 0 1 hm5C_associated_SNPs_21106 0 0 1 0 2 MEF2A chr15:100215663 5'GT 100215663 Upstream 47bp
chr2 109347926 109347926 1 + T A COAD 109347910 + 109347890 109347930 41 CCAAACTTTTCCCAGGAAGTCCTGCAATTTATAAACTAAAG CCAAACTTTTCCCAGGAAGTCCTGCAATTTATAAACAAAAG < 41bp 1 0.043002639329474 1 0.173730224370956 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347910 chr2:109347926 nonsynonymous SNV 0.979 3 37 hm5C_associated_SNPs_21107 0 0 0 0 1 RANBP2 chr2:109347930 5'GT 109347930 Upstream 5bp
chr2 109347926 109347926 1 + T A COAD 109347911 + 109347891 109347931 41 CAAACTTTTCCCAGGAAGTCCTGCAATTTATAAACTAAAGG CAAACTTTTCCCAGGAAGTCCTGCAATTTATAAACAAAAGG < 41bp 1 0.307464975678996 1 0.289895057678223 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347911 chr2:109347926 nonsynonymous SNV 0.979 3 36 hm5C_associated_SNPs_21108 0 0 0 0 1 RANBP2 chr2:109347930 5'GT 109347930 Upstream 5bp
chr2 109347926 109347926 1 + T A COAD 109347925 + 109347905 109347945 41 GAAGTCCTGCAATTTATAAACTAAAGGTAAACAAACAAAAC GAAGTCCTGCAATTTATAAACAAAAGGTAAACAAACAAAAC < 41bp 1 0.477960630140224 1 0.56523472070694 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347925 chr2:109347926 nonsynonymous SNV 0.979 3 22 hm5C_associated_SNPs_21109 0 0 0 0 1 RANBP2 chr2:109347930 5'GT 109347930 Upstream 5bp
chr10 75871827 75871827 1 + C T COAD 75871841 + 75871821 75871861 41 TGGCCGCGGCTCAGTCCTTGCATCGGGAAGCTACCAAGTGG TGGCCGTGGCTCAGTCCTTGCATCGGGAAGCTACCAAGTGG < 41bp 1 0.339072780436454 1 0.120084375143051 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75871841 chr10:75871827 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_21110 0 0 0 0 1 VCL chr10:75871870 5'GT 75871870 Upstream 44bp
chr1 45973941 45973941 1 + C T COAD 45973929 + 45973909 45973949 41 TCATTGCTGACTACGAGGTGCACCCCAACCGACGCCCCAAG TCATTGCTGACTACGAGGTGCACCCCAACCGATGCCCCAAG < 41bp 1 0.232376257133707 1 0.048687607049942 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMACHC ENSG00000132763 CDS Human protein_coding chr1:45973929 chr1:45973941 nonsynonymous SNV 0.977 5 33 hm5C_associated_SNPs_21112 1 0 1 0 2 MMACHC chr1:45973884 3'AG 45973884 Downstream 58bp
chr1 45973941 45973941 1 + C T COAD 45973929 + 45973909 45973949 41 TCATTGCTGACTACGAGGTGCACCCCAACCGACGCCCCAAG TCATTGCTGACTACGAGGTGCACCCCAACCGATGCCCCAAG < 41bp 1 0.232376257133707 1 0.048687607049942 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMACHC ENSG00000132763 CDS Human protein_coding chr1:45973929 chr1:45973941 nonsynonymous SNV 0.977 5 33 hm5C_associated_SNPs_21112 1 0 1 0 2 MMACHC chr1:45974036 5'GT 45974036 Upstream 96bp
chr16 50261779 50261779 1 + G A COAD 50261765 + 50261745 50261785 41 GTTAGGATTCCGATGCAACACCATGCAAAACCCCGAAACAG GTTAGGATTCCGATGCAACACCATGCAAAACCCCAAAACAG < 41bp 1 0.224552192189938 1 0.608963489532471 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAPD5 ENSG00000121274 CDS Human protein_coding chr16:50261765 chr16:50261779 synonymous SNV . 0 35 hm5C_associated_SNPs_21113 0 0 1 0 1 PAPD5 chr16:50261750 3'AG 50261750 Downstream 30bp
chr15 40756131 40756131 1 + G A COAD 40756137 + 40756117 40756157 41 ACAATCCGAGTCCGGGACACCGTCCTTCTCAAATCAGGCCC ACAATCCGAGTCCGAGACACCGTCCTTCTCAAATCAGGCCC < 41bp 1 0.241718988710027 1 0.0947480797767639 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40756137 chr15:40756131 synonymous SNV . 0 15 hm5C_associated_SNPs_21114 0 0 0 0 2 BAHD1 chr15:40756060 3'AG 40756060 Downstream 72bp
chr15 40756131 40756131 1 + G A COAD 40756137 + 40756117 40756157 41 ACAATCCGAGTCCGGGACACCGTCCTTCTCAAATCAGGCCC ACAATCCGAGTCCGAGACACCGTCCTTCTCAAATCAGGCCC < 41bp 1 0.241718988710027 1 0.0947480797767639 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40756137 chr15:40756131 synonymous SNV . 0 15 hm5C_associated_SNPs_21114 0 0 0 0 2 BAHD1 chr15:40756219 5'GT 40756219 Upstream 89bp
chr19 36124656 36124656 1 + C T COAD 36124636 + 36124616 36124656 41 GGCCTAGGCCTGGGGTTGGGCCTGAAAGAGAAGGAAGAGGC GGCCTAGGCCTGGGGTTGGGCCTGAAAGAGAAGGAAGAGGT < 41bp 1 0.531131199892682 1 0.244213461875916 experiment 0.937737600214636 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124636 chr19:36124656 nonsynonymous SNV 0.996 0 41 hm5C_associated_SNPs_21115 0 0 1 0 1 RBM42 chr19:36124589 3'AG 36124589 Downstream 68bp
chr17 79671702 79671702 1 + G T COAD 79671721 + 79671701 79671741 41 GGGTGGTGTGATGTCTGGGGCTGTCCCTGCTGCAGCAGCCC GTGTGGTGTGATGTCTGGGGCTGTCCCTGCTGCAGCAGCCC < 41bp 1 0.106952421944727 1 0.0668188333511353 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79671721 chr17:79671702 nonsynonymous SNV 0.024 4 2 hm5C_associated_SNPs_21116 0 0 1 0 2 MRPL12 chr17:79671663 3'AG 79671663 Downstream 40bp
chr17 79671702 79671702 1 + G T COAD 79671721 + 79671701 79671741 41 GGGTGGTGTGATGTCTGGGGCTGTCCCTGCTGCAGCAGCCC GTGTGGTGTGATGTCTGGGGCTGTCCCTGCTGCAGCAGCCC < 41bp 1 0.106952421944727 1 0.0668188333511353 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79671721 chr17:79671702 nonsynonymous SNV 0.024 4 2 hm5C_associated_SNPs_21116 0 0 1 0 2 MRPL12 chr17:79671746 5'GT 79671746 Upstream 45bp
chr10 35854955 35854955 1 + G A COAD 35854964 + 35854944 35854984 41 TTTGCAGGAACGAGCTAGAGCGACAGTTTCTTGAATTGCTG TTTGCAGGAACAAGCTAGAGCGACAGTTTCTTGAATTGCTG < 41bp 1 0.543504089854992 1 0.278145253658295 experiment 0.912991820290017 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCNY ENSG00000108100 CDS Human protein_coding chr10:35854964 chr10:35854955 nonsynonymous SNV 0.992 3 12 hm5C_associated_SNPs_21118 0 0 1 0 1 CCNY chr10:35854951 3'AG 35854951 Downstream 5bp
chr16 30975430 30975430 1 + C T COAD 30975417 + 30975397 30975437 41 CCTGCTCTGTCGCTCTAGGCCGAATCCCGCCGCCGCTCTTC CCTGCTCTGTCGCTCTAGGCCGAATCCCGCCGCTGCTCTTC < 41bp 1 0.21120062649177 1 0.202542185783386 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30975417 chr16:30975430 nonsynonymous SNV 0.995 3 34 hm5C_associated_SNPs_21119 0 0 1 0 1 SETD1A chr16:30975415 3'AG 30975415 Downstream 16bp
chr19 17392883 17392883 1 + T C COAD 17392879 + 17392859 17392899 41 TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCGCGGAC TTTGCAGGGCAGTAGAGGAGCTGCCGCGCTGCGGCGCGGAC < 41bp 1 0.45360564560903 1 0.252821385860443 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17392879 chr19:17392883 nonsynonymous SNV 0.716 4 25 hm5C_associated_SNPs_21121 0 0 1 0 2 ANKLE1 chr19:17392866 3'AG 17392866 Downstream 18bp
chr19 17392883 17392883 1 + T C COAD 17392879 + 17392859 17392899 41 TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCGCGGAC TTTGCAGGGCAGTAGAGGAGCTGCCGCGCTGCGGCGCGGAC < 41bp 1 0.45360564560903 1 0.252821385860443 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANKLE1 ENSG00000160117 CDS Human other chr19:17392879 chr19:17392883 nonsynonymous SNV 0.716 4 25 hm5C_associated_SNPs_21121 0 0 1 0 2 ANKLE1 chr19:17392871 3'AG 17392871 Downstream 13bp
chr6 107100424 107100424 1 + A C COAD 107100423 + 107100403 107100443 41 ATTCATGCTTCCCAGTTTGGCAGATGTGAGCAAACTATGTA ATTCATGCTTCCCAGTTTGGCCGATGTGAGCAAACTATGTA < 41bp 1 0.259961810830874 1 0.143926978111267 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control QRSL1 ENSG00000130348 CDS Human protein_coding chr6:107100423 chr6:107100424 synonymous SNV . 0 22 hm5C_associated_SNPs_21122 0 0 1 0 2 QRSL1 chr6:107100342 3'AG 107100342 Downstream 83bp
chr6 107100424 107100424 1 + A C COAD 107100423 + 107100403 107100443 41 ATTCATGCTTCCCAGTTTGGCAGATGTGAGCAAACTATGTA ATTCATGCTTCCCAGTTTGGCCGATGTGAGCAAACTATGTA < 41bp 1 0.259961810830874 1 0.143926978111267 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control QRSL1 ENSG00000130348 CDS Human protein_coding chr6:107100423 chr6:107100424 synonymous SNV . 0 22 hm5C_associated_SNPs_21122 0 0 1 0 2 QRSL1 chr6:107100457 5'GT 107100457 Upstream 34bp
chr4 1018713 1018713 1 + C T COAD 1018696 + 1018676 1018716 41 TCCTCTCGCTCTTGCAGACCCAAAACCGCCAGGGCCACCTG TCCTCTCGCTCTTGCAGACCCAAAACCGCCAGGGCCATCTG < 41bp 1 0.630983902761169 1 0.22291362285614 experiment 0.738032194477661 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FGFRL1 ENSG00000127418 CDS Human protein_coding chr4:1018696 chr4:1018713 nonsynonymous SNV 0.073 0 38 hm5C_associated_SNPs_21123 0 0 1 0 1 FGFRL1 chr4:1018693 3'AG 1018693 Downstream 21bp
chr16 70509341 70509341 1 + C T COAD 70509347 + 70509327 70509367 41 CTGCTCCGCACCTTCGGGGGCGGCTTTGAGCTGCACACCTG CTGCTCCGCACCTTTGGGGGCGGCTTTGAGCTGCACACCTG < 41bp 1 0.413374376216956 1 0.414639115333557 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FUK ENSG00000157353 CDS Human protein_coding chr16:70509347 chr16:70509341 synonymous SNV . 0 15 hm5C_associated_SNPs_21126 0 0 1 0 2 FUK chr16:70509253 3'AG 70509253 Downstream 89bp
chr16 70509341 70509341 1 + C T COAD 70509347 + 70509327 70509367 41 CTGCTCCGCACCTTCGGGGGCGGCTTTGAGCTGCACACCTG CTGCTCCGCACCTTTGGGGGCGGCTTTGAGCTGCACACCTG < 41bp 1 0.413374376216956 1 0.414639115333557 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FUK ENSG00000157353 CDS Human protein_coding chr16:70509347 chr16:70509341 synonymous SNV . 0 15 hm5C_associated_SNPs_21126 0 0 1 0 2 FUK chr16:70509396 5'GT 70509396 Upstream 56bp
chr1 24979099 24979099 1 + G T COAD 24979097 + 24979077 24979117 41 CTTCTCACACTCGACCTAGACGGCGCCATAGATCCCGATCA CTTCTCACACTCGACCTAGACGTCGCCATAGATCCCGATCA < 41bp 1 0.393273953353938 1 0.340868562459946 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24979097 chr1:24979099 synonymous SNV . 0 23 hm5C_associated_SNPs_21127 0 0 1 0 1 SRRM1 chr1:24979119 5'GT 24979119 Upstream 21bp
chr6 7572263 7572263 1 + T C COAD 7572244 + 7572224 7572264 41 AGGATGACTCTCAAAAACCTCCCTCTAGCAGACCAGGGATC AGGATGACTCTCAAAAACCTCCCTCTAGCAGACCAGGGACC < 41bp 1 0.0340350088039412 1 0.0659577250480652 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572244 chr6:7572263 nonsynonymous SNV 0.418 0 40 hm5C_associated_SNPs_21128 0 0 1 0 1 DSP chr6:7572301 5'GT 7572301 Upstream 39bp
chr19 41135394 41135394 1 + G A COAD 41135396 + 41135376 41135416 41 CCTTCCGCTGCATCTGCCGCCCGGGATTCGCACCCACGCAC CCTTCCGCTGCATCTGCCACCCGGGATTCGCACCCACGCAC < 41bp 1 0.635030753903843 1 0.896353840827942 experiment 0.729938492192314 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41135396 chr19:41135394 nonsynonymous SNV 0.035 1 19 hm5C_associated_SNPs_21129 0 0 1 0 1 LTBP4 chr19:41135301 3'AG 41135301 Downstream 94bp
chr1 46073985 46073985 1 + G A COAD 46073974 + 46073954 46073994 41 GATAGCTGCTAATGAAGAGACACAAGAGAGAGAAGAACAGA GATAGCTGCTAATGAAGAGACACAAGAGAGAAAAGAACAGA < 41bp 1 0.67193828163513 1 0.504048466682434 experiment 0.656123436729741 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NASP ENSG00000132780 CDS Human protein_coding chr1:46073974 chr1:46073985 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_21130 0 0 1 0 1 NASP chr1:46074009 5'GT 46074009 Upstream 25bp
chr1 46073985 46073985 1 + G A COAD 46073991 + 46073971 46074011 41 AGACACAAGAGAGAGAAGAACAGATGAAAGAGGGTGAAGGT AGACACAAGAGAGAAAAGAACAGATGAAAGAGGGTGAAGGT < 41bp 1 0.523986950897477 1 0.638064444065094 experiment 0.952026098205045 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NASP ENSG00000132780 CDS Human protein_coding chr1:46073991 chr1:46073985 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_21131 0 0 1 0 1 NASP chr1:46074009 5'GT 46074009 Upstream 25bp
chr11 65826382 65826382 1 + C T COAD 65826372 + 65826352 65826392 41 CGAGGGGTGTCCTCTGAGAGCTCTGGGGACCGGGAGAAAGA CGAGGGGTGTCCTCTGAGAGCTCTGGGGACTGGGAGAAAGA < 41bp 1 0.455442286028717 1 0.470812827348709 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65826372 chr11:65826382 nonsynonymous SNV 0.991 2 31 hm5C_associated_SNPs_21132 0 0 1 0 1 SF3B2 chr11:65826301 3'AG 65826301 Downstream 82bp
chr8 145065693 145065693 1 + A G COAD 145065698 + 145065678 145065718 41 AAGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTTC AAGGGGGCTACCCCCGGGGGCCATATCCCCAGAGCCCCTTC < 41bp 1 0.213198020408098 1 0.0583626329898834 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065698 chr8:145065693 nonsynonymous SNV 0.893 0 16 hm5C_associated_SNPs_21135 0 0 1 0 1 GRINA chr8:145065770 5'GT 145065770 Upstream 78bp
chr8 145065693 145065693 1 + A G COAD 145065699 + 145065679 145065719 41 AGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTTCC AGGGGGCTACCCCCGGGGGCCATATCCCCAGAGCCCCTTCC < 41bp 1 0.170403536616743 1 0.154354065656662 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065699 chr8:145065693 nonsynonymous SNV 0.893 0 15 hm5C_associated_SNPs_21136 0 0 1 0 1 GRINA chr8:145065770 5'GT 145065770 Upstream 78bp
chr22 42280888 42280888 1 + C T COAD 42280873 + 42280853 42280893 41 TCCTGCAGGATCCGCCTGTTCCGATGTACACATGGCGTTGT TCCTGCAGGATCCGCCTGTTCCGATGTACACATGGTGTTGT < 41bp 1 0.277419888639602 1 0.165903717279434 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42280873 chr22:42280888 nonsynonymous SNV 0.680 3 36 hm5C_associated_SNPs_21138 0 0 1 0 1 SREBF2 chr22:42280846 3'AG 42280846 Downstream 43bp
chr12 71977624 71977624 1 + G A COAD 71977616 + 71977596 71977636 41 GAACATGCTCACGGGAGTCTCCAGTGCCGTGCTGGCTGGTG GAACATGCTCACGGGAGTCTCCAGTGCCATGCTGGCTGGTG < 41bp 1 0.421914924993203 1 0.683469414710999 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LGR5 ENSG00000139292 CDS Human protein_coding chr12:71977616 chr12:71977624 nonsynonymous SNV 0.004 1 29 hm5C_associated_SNPs_21141 0 0 1 0 1 LGR5 chr12:71977692 5'GT 71977692 Upstream 69bp
chr2 211525367 211525367 1 + T C COAD 211525357 + 211525337 211525377 41 ATTGGACCATCCCATAATTCCTGCTGACTATGTTGCAATTA ATTGGACCATCCCATAATTCCTGCTGACTACGTTGCAATTA < 41bp 1 0.349943431592483 1 0.0398069024085999 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211525357 chr2:211525367 synonymous SNV . 0 31 hm5C_associated_SNPs_21142 0 0 1 0 1 CPS1 chr2:211525379 5'GT 211525379 Upstream 13bp
chr19 50902126 50902126 1 + G A COAD 50902140 + 50902120 50902160 41 GCGGCGGCCAGGCCCAGGGCCCGGGGTGCCCCCAAAGCGGG GCGGCGACCAGGCCCAGGGCCCGGGGTGCCCCCAAAGCGGG < 41bp 1 0.548211864068166 1 0.730579316616058 experiment 0.903576271863667 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50902140 chr19:50902126 synonymous SNV . 0 7 hm5C_associated_SNPs_21143 0 0 1 0 1 POLD1 chr19:50902105 3'AG 50902105 Downstream 22bp
chr19 50902126 50902126 1 + G A COAD 50902141 + 50902121 50902161 41 CGGCGGCCAGGCCCAGGGCCCGGGGTGCCCCCAAAGCGGGC CGGCGACCAGGCCCAGGGCCCGGGGTGCCCCCAAAGCGGGC < 41bp 1 0.761318604866063 1 0.851008534431458 experiment 0.477362790267875 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50902141 chr19:50902126 synonymous SNV . 0 6 hm5C_associated_SNPs_21144 0 0 1 0 1 POLD1 chr19:50902105 3'AG 50902105 Downstream 22bp
chrX 48372958 48372958 1 + A G COAD 48372950 + 48372930 48372970 41 AGCCACTGAATGTGGAGCTGCCTCGGTCAATGGTGGAAGTT AGCCACTGAATGTGGAGCTGCCTCGGTCGATGGTGGAAGTT < 41bp 1 0.0907908855189887 1 0.102125555276871 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PORCN ENSG00000102312 CDS Human protein_coding chrX:48372950 chrX:48372958 synonymous SNV . 0 29 hm5C_associated_SNPs_21145 0 0 0 0 2 PORCN chrX:48372913 3'AG 48372913 Downstream 46bp
chrX 48372958 48372958 1 + A G COAD 48372950 + 48372930 48372970 41 AGCCACTGAATGTGGAGCTGCCTCGGTCAATGGTGGAAGTT AGCCACTGAATGTGGAGCTGCCTCGGTCGATGGTGGAAGTT < 41bp 1 0.0907908855189887 1 0.102125555276871 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PORCN ENSG00000102312 CDS Human protein_coding chrX:48372950 chrX:48372958 synonymous SNV . 0 29 hm5C_associated_SNPs_21145 0 0 0 0 2 PORCN chrX:48373013 5'GT 48373013 Upstream 56bp
chr1 26883496 26883496 1 + A G COAD 26883509 + 26883489 26883529 41 AAGCTATACCGTCGTGAGATCAAGCCACCCTTCAAGCCAGC AAGCTATGCCGTCGTGAGATCAAGCCACCCTTCAAGCCAGC < 41bp 1 0.287250581672401 1 0.697667419910431 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26883509 chr1:26883496 nonsynonymous SNV 0.935 2 8 hm5C_associated_SNPs_21146 0 0 1 0 1 RPS6KA1 chr1:26883489 3'AG 26883489 Downstream 8bp
chr2 32666440 32666440 1 + G A COAD 32666438 + 32666418 32666458 41 AATGAAAATACAAGTGGCACCCGTAAATCTGAAAACCTCCG AATGAAAATACAAGTGGCACCCATAAATCTGAAAACCTCCG < 41bp 1 0.0260662581430005 1 0.2214075922966 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32666438 chr2:32666440 nonsynonymous SNV 0.973 1 23 hm5C_associated_SNPs_21147 0 0 1 0 2 BIRC6 chr2:32666397 3'AG 32666397 Downstream 44bp
chr2 32666440 32666440 1 + G A COAD 32666438 + 32666418 32666458 41 AATGAAAATACAAGTGGCACCCGTAAATCTGAAAACCTCCG AATGAAAATACAAGTGGCACCCATAAATCTGAAAACCTCCG < 41bp 1 0.0260662581430005 1 0.2214075922966 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32666438 chr2:32666440 nonsynonymous SNV 0.973 1 23 hm5C_associated_SNPs_21147 0 0 1 0 2 BIRC6 chr2:32666530 5'GT 32666530 Upstream 91bp
chr1 65147714 65147714 1 + G A COAD 65147716 + 65147696 65147736 41 ACTCGGTTTATAGCTGCGGTCATCGAACGACATGCACACAG ACTCGGTTTATAGCTGCGATCATCGAACGACATGCACACAG < 41bp 1 0.468498976557224 1 0.492029517889023 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65147716 chr1:65147714 nonsynonymous SNV 0.976 1 19 hm5C_associated_SNPs_21148 0 0 0 0 2 CACHD1 chr1:65147688 3'AG 65147688 Downstream 27bp
chr1 65147714 65147714 1 + G A COAD 65147716 + 65147696 65147736 41 ACTCGGTTTATAGCTGCGGTCATCGAACGACATGCACACAG ACTCGGTTTATAGCTGCGATCATCGAACGACATGCACACAG < 41bp 1 0.468498976557224 1 0.492029517889023 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65147716 chr1:65147714 nonsynonymous SNV 0.976 1 19 hm5C_associated_SNPs_21148 0 0 0 0 2 CACHD1 chr1:65147789 5'GT 65147789 Upstream 76bp
chr12 124239081 124239081 1 + G A COAD 124239064 + 124239044 124239084 41 CTCCTACCTGAGGCTCTGGGCGCTTAGCCTGGCTCACGCAC CTCCTACCTGAGGCTCTGGGCGCTTAGCCTGGCTCACACAC < 41bp 1 0.271394087098168 1 0.099140077829361 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124239064 chr12:124239081 nonsynonymous SNV 0.961 5 38 hm5C_associated_SNPs_21149 0 0 1 0 1 ATP6V0A2 chr12:124239084 5'GT 124239084 Upstream 4bp
chr7 73770923 73770923 1 + C T COAD 73770922 + 73770902 73770942 41 CGTCAGCTCTGTGGCCTCCTCCGTGGGGGGTCGGCCCAGCC CGTCAGCTCTGTGGCCTCCTCTGTGGGGGGTCGGCCCAGCC < 41bp 1 0.526944318832851 1 0.694785714149475 experiment 0.946111362334298 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73770922 chr7:73770923 synonymous SNV . 0 22 hm5C_associated_SNPs_21151 0 0 0 0 1 CLIP2 chr7:73770953 5'GT 73770953 Upstream 31bp
chr22 42262915 42262915 1 + A G COAD 42262909 + 42262889 42262929 41 AACAGCTGTGTAGCTCCTTTCCTGGCAGTGGTGGTAGTGGT AACAGCTGTGTAGCTCCTTTCCTGGCGGTGGTGGTAGTGGT < 41bp 1 0.150229895369388 1 0.213263690471649 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42262909 chr22:42262915 nonsynonymous SNV 0.212 0 27 hm5C_associated_SNPs_21154 0 0 1 0 1 SREBF2 chr22:42262835 3'AG 42262835 Downstream 81bp
chrX 48417378 48417378 1 + C T COAD 48417383 + 48417363 48417403 41 CATCACTGACGACTGCCGCCCTGCCCTTTACACAGTCCATC CATCACTGACGACTGTCGCCCTGCCCTTTACACAGTCCATC < 41bp 1 0.191792462107121 1 0.0442826747894287 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48417383 chrX:48417378 nonsynonymous SNV 0.984 0 16 hm5C_associated_SNPs_21155 0 0 1 0 2 TBC1D25 chrX:48417285 3'AG 48417285 Downstream 94bp
chrX 48417378 48417378 1 + C T COAD 48417383 + 48417363 48417403 41 CATCACTGACGACTGCCGCCCTGCCCTTTACACAGTCCATC CATCACTGACGACTGTCGCCCTGCCCTTTACACAGTCCATC < 41bp 1 0.191792462107121 1 0.0442826747894287 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48417383 chrX:48417378 nonsynonymous SNV 0.984 0 16 hm5C_associated_SNPs_21155 0 0 1 0 2 TBC1D25 chrX:48417412 5'GT 48417412 Upstream 35bp
chr6 32134865 32134865 1 + C T COAD 32134883 + 32134863 32134903 41 GACGTGGATGAATGTAGGACCAGCATCACCCTCTGCTCGCA GATGTGGATGAATGTAGGACCAGCATCACCCTCTGCTCGCA < 41bp 1 0.504397495138335 1 0.429908394813538 experiment 0.99120500972333 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134883 chr6:32134865 synonymous SNV . 0 3 hm5C_associated_SNPs_21156 0 0 0 0 1 EGFL8 chr6:32134864 3'AG 32134864 Downstream 2bp
chr1 110559004 110559004 1 + C T COAD 110558996 + 110558976 110559016 41 CTCTCCAAAGCTGGGAAGCTCTGTGTTCCGGCCATGAACGT CTCTCCAAAGCTGGGAAGCTCTGTGTTCTGGCCATGAACGT < 41bp 1 0.466733550460475 1 0.0671622455120087 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient AHCYL1 ENSG00000168710 CDS Human protein_coding chr1:110558996 chr1:110559004 nonsynonymous SNV 0.982 5 29 hm5C_associated_SNPs_21157 0 0 1 0 2 AHCYL1 chr1:110558966 3'AG 110558966 Downstream 39bp
chr1 110559004 110559004 1 + C T COAD 110558996 + 110558976 110559016 41 CTCTCCAAAGCTGGGAAGCTCTGTGTTCCGGCCATGAACGT CTCTCCAAAGCTGGGAAGCTCTGTGTTCTGGCCATGAACGT < 41bp 1 0.466733550460475 1 0.0671622455120087 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient AHCYL1 ENSG00000168710 CDS Human protein_coding chr1:110558996 chr1:110559004 nonsynonymous SNV 0.982 5 29 hm5C_associated_SNPs_21157 0 0 1 0 2 AHCYL1 chr1:110559082 5'GT 110559082 Upstream 79bp
chr11 120099669 120099669 1 + T G COAD 120099678 + 120099658 120099698 41 ACGGGAAGCCCTGCGTCTGCCGCTATGGCCTGAGCCTGGCC ACGGGAAGCCCGGCGTCTGCCGCTATGGCCTGAGCCTGGCC < 41bp 1 0.760701465953151 1 0.869125008583069 experiment 0.478597068093698 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OAF ENSG00000184232 CDS Human protein_coding chr11:120099678 chr11:120099669 nonsynonymous SNV 0.104 4 12 hm5C_associated_SNPs_21158 0 0 0 0 1 OAF chr11:120099577 3'AG 120099577 Downstream 93bp
chr11 120099669 120099669 1 + T G COAD 120099680 + 120099660 120099700 41 GGGAAGCCCTGCGTCTGCCGCTATGGCCTGAGCCTGGCCTG GGGAAGCCCGGCGTCTGCCGCTATGGCCTGAGCCTGGCCTG < 41bp 1 0.561534364716553 1 0.549838781356812 experiment 0.876931270566895 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OAF ENSG00000184232 CDS Human protein_coding chr11:120099680 chr11:120099669 nonsynonymous SNV 0.104 4 10 hm5C_associated_SNPs_21159 0 0 0 0 1 OAF chr11:120099577 3'AG 120099577 Downstream 93bp
chr2 202141582 202141582 1 + A G COAD 202141594 + 202141574 202141614 41 AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAATCA AAAAGCAAGCCTCGGGGATACTGTCTGATCATCAACAATCA < 41bp 1 0.316301072263737 1 0.273353666067123 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CASP8 ENSG00000064012 CDS Human protein_coding chr2:202141594 chr2:202141582 nonsynonymous SNV 0.878 0 9 hm5C_associated_SNPs_21161 0 0 1 0 1 CASP8 chr2:202141550 3'AG 202141550 Downstream 33bp
chr21 38117418 38117418 1 + C A COAD 38117415 + 38117395 38117435 41 CCGGCGAACACTGCTAGGCACAGCCTGGTGCCAAGCTACGA CCGGCGAACACTGCTAGGCACAGACTGGTGCCAAGCTACGA < 41bp 1 0.223972603431494 1 0.204629719257355 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIM2 ENSG00000159263 CDS Human protein_coding chr21:38117415 chr21:38117418 nonsynonymous SNV 0.006 1 24 hm5C_associated_SNPs_21162 0 0 0 0 1 SIM2 chr21:38117437 5'GT 38117437 Upstream 20bp
chr14 24617679 24617679 1 + T C COAD 24617684 + 24617664 24617704 41 CTGGGGAGCCCAGCCTAACTCAAGTAAGTTTGAGGACCCCC CTGGGGAGCCCAGCCCAACTCAAGTAAGTTTGAGGACCCCC < 41bp 1 0.383498841046875 1 0.379353165626526 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617684 chr14:24617679 nonsynonymous SNV 0.033 1 16 hm5C_associated_SNPs_21163 0 0 1 0 1 RNF31 chr14:24617686 5'GT 24617686 Upstream 8bp
chr22 42042975 42042975 1 + T C COAD 42042976 + 42042956 42042996 41 TCCAGAAGGCTCTCAAGCCTCCTCCAATAAAGCTCTATCGG TCCAGAAGGCTCTCAAGCCCCCTCCAATAAAGCTCTATCGG < 41bp 1 0.0745788963910086 1 0.243395268917084 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42042976 chr22:42042975 synonymous SNV . 0 20 hm5C_associated_SNPs_21165 0 0 1 0 1 XRCC6 chr22:42042900 3'AG 42042900 Downstream 76bp
chrX 10180628 10180628 1 + G A COAD 10180611 + 10180591 10180631 41 TACCATCACCATGACTGGATCATCTTCAGGAACTGGTGCAG TACCATCACCATGACTGGATCATCTTCAGGAACTGGTACAG < 41bp 1 0.177928985859423 1 0.0790988504886627 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10180611 chrX:10180628 nonsynonymous SNV 0.998 5 38 hm5C_associated_SNPs_21166 0 0 0 0 1 CLCN4 chrX:10180693 5'GT 10180693 Upstream 66bp
chr11 118405277 118405277 1 + T C COAD 118405286 + 118405266 118405306 41 AGCGTGAGCAGTGATGAGATCTGGCTCTGAGCCGAGGGCGA AGCGTGAGCAGCGATGAGATCTGGCTCTGAGCCGAGGGCGA < 41bp 1 0.607481359605798 1 0.458403885364532 experiment 0.785037280788404 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118405286 chr11:118405277 synonymous SNV . 0 12 hm5C_associated_SNPs_21169 0 0 1 0 1 TMEM25 chr11:118405222 3'AG 118405222 Downstream 56bp
chr11 118405277 118405277 1 + T C COAD 118405290 + 118405270 118405310 41 TGAGCAGTGATGAGATCTGGCTCTGAGCCGAGGGCGAGACA TGAGCAGCGATGAGATCTGGCTCTGAGCCGAGGGCGAGACA < 41bp 1 0.301954586295442 1 0.060281366109848 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118405290 chr11:118405277 synonymous SNV . 0 8 hm5C_associated_SNPs_21170 0 0 1 0 1 TMEM25 chr11:118405222 3'AG 118405222 Downstream 56bp
chr11 118405277 118405277 1 + T C COAD 118405292 + 118405272 118405312 41 AGCAGTGATGAGATCTGGCTCTGAGCCGAGGGCGAGACAGG AGCAGCGATGAGATCTGGCTCTGAGCCGAGGGCGAGACAGG < 41bp 1 0.616057937881851 1 0.170052498579025 experiment 0.767884124236298 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118405292 chr11:118405277 synonymous SNV . 0 6 hm5C_associated_SNPs_21171 0 0 1 0 1 TMEM25 chr11:118405222 3'AG 118405222 Downstream 56bp
chr16 70509348 70509348 1 + G A COAD 70509347 + 70509327 70509367 41 CTGCTCCGCACCTTCGGGGGCGGCTTTGAGCTGCACACCTG CTGCTCCGCACCTTCGGGGGCAGCTTTGAGCTGCACACCTG < 41bp 1 0.362170201058777 1 0.303028285503387 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FUK ENSG00000157353 CDS Human protein_coding chr16:70509347 chr16:70509348 nonsynonymous SNV 0.776 4 22 hm5C_associated_SNPs_21172 0 0 1 0 2 FUK chr16:70509253 3'AG 70509253 Downstream 96bp
chr16 70509348 70509348 1 + G A COAD 70509347 + 70509327 70509367 41 CTGCTCCGCACCTTCGGGGGCGGCTTTGAGCTGCACACCTG CTGCTCCGCACCTTCGGGGGCAGCTTTGAGCTGCACACCTG < 41bp 1 0.362170201058777 1 0.303028285503387 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FUK ENSG00000157353 CDS Human protein_coding chr16:70509347 chr16:70509348 nonsynonymous SNV 0.776 4 22 hm5C_associated_SNPs_21172 0 0 1 0 2 FUK chr16:70509396 5'GT 70509396 Upstream 49bp
chr11 75280007 75280007 1 + G A COAD 75279988 + 75279968 75280008 41 TCCGCTCCTCTCCCAGGCCTCTACAACTACTACGACGACGA TCCGCTCCTCTCCCAGGCCTCTACAACTACTACGACGACAA < 41bp 1 0.568083100635948 1 0.832947850227356 experiment 0.863833798728104 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279988 chr11:75280007 nonsynonymous SNV 0.947 1 40 hm5C_associated_SNPs_21173 0 0 1 0 1 SERPINH1 chr11:75279984 3'AG 75279984 Downstream 24bp
chr11 75280007 75280007 1 + G A COAD 75280006 + 75279986 75280026 41 CTCTACAACTACTACGACGACGAGAAGGAAAAGCTGCAAAT CTCTACAACTACTACGACGACAAGAAGGAAAAGCTGCAAAT < 41bp 1 0.728792804055332 1 0.519886493682861 experiment 0.542414391889337 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75280006 chr11:75280007 nonsynonymous SNV 0.947 1 22 hm5C_associated_SNPs_21174 0 0 1 0 1 SERPINH1 chr11:75279984 3'AG 75279984 Downstream 24bp
chr17 6012943 6012943 1 + T A COAD 6012962 + 6012942 6012982 41 ATTCTCAGGGGCTGGGAATGCTACTGTGCTTACCCTACCCC AATCTCAGGGGCTGGGAATGCTACTGTGCTTACCCTACCCC < 41bp 1 0.599850823257624 1 0.435378402471542 experiment 0.800298353484752 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WSCD1 ENSG00000179314 CDS Human protein_coding chr17:6012962 chr17:6012943 nonsynonymous SNV 0.992 1 2 hm5C_associated_SNPs_21175 0 0 1 0 1 WSCD1 chr17:6012927 3'AG 6012927 Downstream 17bp
chr13 93879789 93879789 1 + C T COAD 93879771 + 93879751 93879791 41 GCTGCTGCTCTCCCTCCCCGCCGGGGCGGATGTGAAGGCTC GCTGCTGCTCTCCCTCCCCGCCGGGGCGGATGTGAAGGTTC < 41bp 1 0.57437866373525 1 0.802209675312042 experiment 0.851242672529499 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPC6 ENSG00000183098 CDS Human protein_coding chr13:93879771 chr13:93879789 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_21176 0 0 1 0 1 GPC6 chr13:93879869 5'GT 93879869 Upstream 81bp
chr7 134552485 134552485 1 + A G COAD 134552471 + 134552451 134552491 41 CATCATCTGGTCTCCCTGAACCTGAAATCACACCATGGATG CATCATCTGGTCTCCCTGAACCTGAAATCACACCGTGGATG < 41bp 1 0.458356802599252 1 0.242856711149216 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CALD1 ENSG00000122786 CDS Human protein_coding chr7:134552471 chr7:134552485 nonsynonymous SNV 0.978 2 35 hm5C_associated_SNPs_21178 0 0 1 0 2 CALD1 chr7:134552444 3'AG 134552444 Downstream 42bp
chr7 134552485 134552485 1 + A G COAD 134552471 + 134552451 134552491 41 CATCATCTGGTCTCCCTGAACCTGAAATCACACCATGGATG CATCATCTGGTCTCCCTGAACCTGAAATCACACCGTGGATG < 41bp 1 0.458356802599252 1 0.242856711149216 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CALD1 ENSG00000122786 CDS Human protein_coding chr7:134552471 chr7:134552485 nonsynonymous SNV 0.978 2 35 hm5C_associated_SNPs_21178 0 0 1 0 2 CALD1 chr7:134552555 5'GT 134552555 Upstream 71bp
chr1 161751757 161751757 1 + A G COAD 161751776 + 161751756 161751796 41 GACATTTGGGACATCAACAACCAAATCTGTACAGGTAATTA GGCATTTGGGACATCAACAACCAAATCTGTACAGGTAATTA < 41bp 1 0.181838701282624 1 0.138510763645172 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161751776 chr1:161751757 nonsynonymous SNV 0.984 0 2 hm5C_associated_SNPs_21180 0 0 1 0 2 ATF6 chr1:161751702 3'AG 161751702 Downstream 56bp
chr1 161751757 161751757 1 + A G COAD 161751776 + 161751756 161751796 41 GACATTTGGGACATCAACAACCAAATCTGTACAGGTAATTA GGCATTTGGGACATCAACAACCAAATCTGTACAGGTAATTA < 41bp 1 0.181838701282624 1 0.138510763645172 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161751776 chr1:161751757 nonsynonymous SNV 0.984 0 2 hm5C_associated_SNPs_21180 0 0 1 0 2 ATF6 chr1:161751789 5'GT 161751789 Upstream 33bp
chr7 128483327 128483327 1 + C T COAD 128483319 + 128483299 128483339 41 CCTTCCACATCAAGGTGGACCCATCCCACGATGCCAGCAAA CCTTCCACATCAAGGTGGACCCATCCCATGATGCCAGCAAA < 41bp 1 0.0108606200990859 1 0.160033196210861 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128483319 chr7:128483327 synonymous SNV . 0 29 hm5C_associated_SNPs_21181 0 0 0 0 2 FLNC chr7:128483283 3'AG 128483283 Downstream 45bp
chr7 128483327 128483327 1 + C T COAD 128483319 + 128483299 128483339 41 CCTTCCACATCAAGGTGGACCCATCCCACGATGCCAGCAAA CCTTCCACATCAAGGTGGACCCATCCCATGATGCCAGCAAA < 41bp 1 0.0108606200990859 1 0.160033196210861 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128483319 chr7:128483327 synonymous SNV . 0 29 hm5C_associated_SNPs_21181 0 0 0 0 2 FLNC chr7:128483373 5'GT 128483373 Upstream 47bp
chr1 32627990 32627990 1 + G A COAD 32628006 + 32627986 32628026 41 TCTCGCCTACTCTTCAGCAGCGACTCGGACTTGCTGGCAGA TCTCACCTACTCTTCAGCAGCGACTCGGACTTGCTGGCAGA < 41bp 1 0.287347359167707 1 0.0953533947467804 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32628006 chr1:32627990 nonsynonymous SNV 0.997 1 5 hm5C_associated_SNPs_21182 0 0 1 0 1 KPNA6 chr1:32627962 3'AG 32627962 Downstream 29bp
chr3 49053238 49053238 1 - C T COAD 49053243 - 49053223 49053263 41 TACTACAACCGGGTACACATCCTGGGGGTGAGCACACAGCA TACTACAACCGGGTACACATCCTGGAGGTGAGCACACAGCA < 41bp 1 0.233366747093644 1 0.55369645357132 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control DALRD3 ENSG00000178149 CDS Human protein_coding chr3:49053243 chr3:49053238 nonsynonymous SNV 0.967 3 26 hm5C_associated_SNPs_21185 0 0 0 0 2 DALRD3 chr3:49053237 5'GT 49053237 Upstream 2bp
chr3 49053238 49053238 1 - C T COAD 49053243 - 49053223 49053263 41 TACTACAACCGGGTACACATCCTGGGGGTGAGCACACAGCA TACTACAACCGGGTACACATCCTGGAGGTGAGCACACAGCA < 41bp 1 0.233366747093644 1 0.55369645357132 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control DALRD3 ENSG00000178149 CDS Human protein_coding chr3:49053243 chr3:49053238 nonsynonymous SNV 0.967 3 26 hm5C_associated_SNPs_21185 0 0 0 0 2 DALRD3 chr3:49053305 3'AG 49053305 Downstream 68bp
chr3 49053238 49053238 1 - C T COAD 49053246 - 49053226 49053266 41 TCCTACTACAACCGGGTACACATCCTGGGGGTGAGCACACA TCCTACTACAACCGGGTACACATCCTGGAGGTGAGCACACA < 41bp 1 0.108421335229762 1 0.155161172151566 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control DALRD3 ENSG00000178149 CDS Human protein_coding chr3:49053246 chr3:49053238 nonsynonymous SNV 0.967 3 29 hm5C_associated_SNPs_21186 0 0 0 0 2 DALRD3 chr3:49053237 5'GT 49053237 Upstream 2bp
chr3 49053238 49053238 1 - C T COAD 49053246 - 49053226 49053266 41 TCCTACTACAACCGGGTACACATCCTGGGGGTGAGCACACA TCCTACTACAACCGGGTACACATCCTGGAGGTGAGCACACA < 41bp 1 0.108421335229762 1 0.155161172151566 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control DALRD3 ENSG00000178149 CDS Human protein_coding chr3:49053246 chr3:49053238 nonsynonymous SNV 0.967 3 29 hm5C_associated_SNPs_21186 0 0 0 0 2 DALRD3 chr3:49053305 3'AG 49053305 Downstream 68bp
chr3 49053238 49053238 1 - C T COAD 49053248 - 49053228 49053268 41 GCTCCTACTACAACCGGGTACACATCCTGGGGGTGAGCACA GCTCCTACTACAACCGGGTACACATCCTGGAGGTGAGCACA < 41bp 1 0.12375450724544 1 0.178695529699326 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control DALRD3 ENSG00000178149 CDS Human protein_coding chr3:49053248 chr3:49053238 nonsynonymous SNV 0.967 3 31 hm5C_associated_SNPs_21187 0 0 0 0 2 DALRD3 chr3:49053237 5'GT 49053237 Upstream 2bp
chr3 49053238 49053238 1 - C T COAD 49053248 - 49053228 49053268 41 GCTCCTACTACAACCGGGTACACATCCTGGGGGTGAGCACA GCTCCTACTACAACCGGGTACACATCCTGGAGGTGAGCACA < 41bp 1 0.12375450724544 1 0.178695529699326 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control DALRD3 ENSG00000178149 CDS Human protein_coding chr3:49053248 chr3:49053238 nonsynonymous SNV 0.967 3 31 hm5C_associated_SNPs_21187 0 0 0 0 2 DALRD3 chr3:49053305 3'AG 49053305 Downstream 68bp
chr10 115661632 115661632 1 + C T COAD 115661650 + 115661630 115661670 41 CTCGTAGGAGGAGAAAGAGACCCCATGGTAATGACAGTCAC CTTGTAGGAGGAGAAAGAGACCCCATGGTAATGACAGTCAC < 41bp 1 0.791366608667657 1 0.320175319910049 experiment 0.417266782664687 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115661650 chr10:115661632 synonymous SNV . 0 3 hm5C_associated_SNPs_21190 0 0 1 0 1 NHLRC2 chr10:115661656 5'GT 115661656 Upstream 25bp
chr10 115661632 115661632 1 + C T COAD 115661651 + 115661631 115661671 41 TCGTAGGAGGAGAAAGAGACCCCATGGTAATGACAGTCACT TTGTAGGAGGAGAAAGAGACCCCATGGTAATGACAGTCACT < 41bp 1 0.232867277617681 1 0.322580635547638 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115661651 chr10:115661632 synonymous SNV . 0 2 hm5C_associated_SNPs_21191 0 0 1 0 1 NHLRC2 chr10:115661656 5'GT 115661656 Upstream 25bp
chr2 189873899 189873899 1 + G A COAD 189873898 + 189873878 189873918 41 GATGGTTCTCGTAAAAACCCCGCTAGAAACTGCAGAGACCT GATGGTTCTCGTAAAAACCCCACTAGAAACTGCAGAGACCT < 41bp 1 0.273667977787477 1 0.174733579158783 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189873898 chr2:189873899 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_21192 2 0 0 0 1 COL3A1 chr2:189873947 5'GT 189873947 Upstream 49bp
chr14 104139512 104139512 1 + G A COAD 104139522 + 104139502 104139542 41 TGGCTAAGACGAAAAATAACCTGGTGTGTTGACTGCACAGC TGGCTAAGACAAAAAATAACCTGGTGTGTTGACTGCACAGC < 41bp 1 0.714616367211534 1 0.36435329914093 experiment 0.570767265576932 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104139522 chr14:104139512 synonymous SNV . 0 11 hm5C_associated_SNPs_21193 0 0 1 0 1 KLC1 chr14:104139524 5'GT 104139524 Upstream 13bp
chr7 90355881 90355881 1 + A T COAD 90355889 + 90355869 90355909 41 TTCTTTTCTCAGATATGTGTCACAAAGATGTCTACACGGAA TTCTTTTCTCAGTTATGTGTCACAAAGATGTCTACACGGAA < 41bp 1 0.340956695259015 1 0.188469409942627 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355889 chr7:90355881 nonsynonymous SNV 0.977 1 13 hm5C_associated_SNPs_21204 0 0 0 0 1 CDK14 chr7:90355881 3'AG 90355881 Downstream 1bp
chr7 90355881 90355881 1 + A T COAD 90355891 + 90355871 90355911 41 CTTTTCTCAGATATGTGTCACAAAGATGTCTACACGGAACT CTTTTCTCAGTTATGTGTCACAAAGATGTCTACACGGAACT < 41bp 1 0.165211648020585 1 0.130004405975342 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355891 chr7:90355881 nonsynonymous SNV 0.977 1 11 hm5C_associated_SNPs_21205 0 0 0 0 1 CDK14 chr7:90355881 3'AG 90355881 Downstream 1bp
chr7 90355881 90355881 1 + A T COAD 90355900 + 90355880 90355920 41 GATATGTGTCACAAAGATGTCTACACGGAACTGCCAGGGAA GTTATGTGTCACAAAGATGTCTACACGGAACTGCCAGGGAA < 41bp 1 0.584619864018329 1 0.0938813388347626 experiment 0.830760271963343 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355900 chr7:90355881 nonsynonymous SNV 0.977 1 2 hm5C_associated_SNPs_21206 0 0 0 0 1 CDK14 chr7:90355881 3'AG 90355881 Downstream 1bp
chr7 142459866 142459866 1 + G A COAD 142459847 + 142459827 142459867 41 ACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACACTGC ACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACACTAC < 41bp 1 0.760378295120907 1 0.379279375076294 experiment 0.479243409758185 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459847 chr7:142459866 nonsynonymous SNV 0.029 1 40 hm5C_associated_SNPs_21207 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 13bp
chr7 142459866 142459866 1 + G A COAD 142459862 + 142459842 142459882 41 CTCATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGA CTCATCTCTGGCTGGGGCAACACTACGAGCTCTGGCGGTGA < 41bp 1 0.467455917828761 1 0.249523133039474 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459862 chr7:142459866 nonsynonymous SNV 0.029 1 25 hm5C_associated_SNPs_21208 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 13bp
chr7 142459866 142459866 1 + G A COAD 142459864 + 142459844 142459884 41 CATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGT CATCTCTGGCTGGGGCAACACTACGAGCTCTGGCGGTGAGT < 41bp 1 0.597771966651575 1 0.428041756153107 experiment 0.80445606669685 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459864 chr7:142459866 nonsynonymous SNV 0.029 1 23 hm5C_associated_SNPs_21209 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 13bp
chr7 142459866 142459866 1 + G A COAD 142459867 + 142459847 142459887 41 CTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGG CTCTGGCTGGGGCAACACTACGAGCTCTGGCGGTGAGTGGG < 41bp 1 0.428650163798374 1 0.364958584308624 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459867 chr7:142459866 nonsynonymous SNV 0.029 1 20 hm5C_associated_SNPs_21210 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 13bp
chr7 142459866 142459866 1 + G A COAD 142459871 + 142459851 142459891 41 GGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCC GGCTGGGGCAACACTACGAGCTCTGGCGGTGAGTGGGACCC < 41bp 1 0.386594637704386 1 0.272782534360886 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459871 chr7:142459866 nonsynonymous SNV 0.029 1 16 hm5C_associated_SNPs_21211 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 13bp
chr7 142459866 142459866 1 + G A COAD 142459873 + 142459853 142459893 41 CTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCCTT CTGGGGCAACACTACGAGCTCTGGCGGTGAGTGGGACCCTT < 41bp 1 0.585550759456401 1 0.436529964208603 experiment 0.828898481087199 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459873 chr7:142459866 nonsynonymous SNV 0.029 1 14 hm5C_associated_SNPs_21212 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 13bp
chr7 142459866 142459866 1 + G A COAD 142459877 + 142459857 142459897 41 GGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCCTTAGTC GGCAACACTACGAGCTCTGGCGGTGAGTGGGACCCTTAGTC < 41bp 1 0.435787845153433 1 0.804041028022766 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459877 chr7:142459866 nonsynonymous SNV 0.029 1 10 hm5C_associated_SNPs_21213 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 13bp
chr16 30440430 30440430 1 - G A COAD 30440424 - 30440404 30440444 41 AGTTCCATCAGCCTCGGAATCTCCTCCTGGCCTTGGTTGGG AGTTCCATCAGCCTTGGAATCTCCTCCTGGCCTTGGTTGGG < 41bp 1 0.514390025088552 1 0.714076578617096 experiment 0.971219949822895 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCTPP1 ENSG00000179958 CDS Human protein_coding chr16:30440424 chr16:30440430 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_21217 0 0 1 0 2 DCTPP1 chr16:30440378 5'GT 30440378 Upstream 53bp
chr16 30440430 30440430 1 - G A COAD 30440424 - 30440404 30440444 41 AGTTCCATCAGCCTCGGAATCTCCTCCTGGCCTTGGTTGGG AGTTCCATCAGCCTTGGAATCTCCTCCTGGCCTTGGTTGGG < 41bp 1 0.514390025088552 1 0.714076578617096 experiment 0.971219949822895 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCTPP1 ENSG00000179958 CDS Human protein_coding chr16:30440424 chr16:30440430 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_21217 0 0 1 0 2 DCTPP1 chr16:30440488 3'AG 30440488 Downstream 59bp
chr9 37770015 37770015 1 + C T COAD 37769995 + 37769975 37770015 41 CCTTGGAAACCCTTGTGTACCTGACTCCTGACTCAGAACAC CCTTGGAAACCCTTGTGTACCTGACTCCTGACTCAGAACAT < 41bp 1 0.39773015293669 1 0.0446921586990356 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37769995 chr9:37770015 synonymous SNV . 0 41 hm5C_associated_SNPs_21218 0 0 1 1 2 TRMT10B chr9:37769938 3'AG 37769938 Downstream 78bp
chr9 37770015 37770015 1 + C T COAD 37769995 + 37769975 37770015 41 CCTTGGAAACCCTTGTGTACCTGACTCCTGACTCAGAACAC CCTTGGAAACCCTTGTGTACCTGACTCCTGACTCAGAACAT < 41bp 1 0.39773015293669 1 0.0446921586990356 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37769995 chr9:37770015 synonymous SNV . 0 41 hm5C_associated_SNPs_21218 0 0 1 1 2 TRMT10B chr9:37770016 5'GT 37770016 Upstream 2bp
chr9 37770015 37770015 1 + C T COAD 37770013 + 37769993 37770033 41 ACCTGACTCCTGACTCAGAACACGGTATGTAGTTGAATGCA ACCTGACTCCTGACTCAGAACATGGTATGTAGTTGAATGCA < 41bp 1 0.446633434175581 1 0.44210210442543 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37770013 chr9:37770015 synonymous SNV . 0 23 hm5C_associated_SNPs_21219 0 0 1 1 2 TRMT10B chr9:37769938 3'AG 37769938 Downstream 78bp
chr9 37770015 37770015 1 + C T COAD 37770013 + 37769993 37770033 41 ACCTGACTCCTGACTCAGAACACGGTATGTAGTTGAATGCA ACCTGACTCCTGACTCAGAACATGGTATGTAGTTGAATGCA < 41bp 1 0.446633434175581 1 0.44210210442543 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37770013 chr9:37770015 synonymous SNV . 0 23 hm5C_associated_SNPs_21219 0 0 1 1 2 TRMT10B chr9:37770016 5'GT 37770016 Upstream 2bp
chr20 60962969 60962969 1 + T C COAD 60962981 + 60962961 60963001 41 TCGTAGGATGGTGAGTGTTTCCCTGGGCTTTGCTCATCACT TCGTAGGACGGTGAGTGTTTCCCTGGGCTTTGCTCATCACT < 41bp 1 0.279452257625002 1 0.118180990219116 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS21 ENSG00000171858 CDS Human protein_coding chr20:60962981 chr20:60962969 nonsynonymous SNV 0.999 3 9 hm5C_associated_SNPs_21221 0 0 1 0 2 RPS21 chr20:60962899 3'AG 60962899 Downstream 71bp
chr20 60962969 60962969 1 + T C COAD 60962981 + 60962961 60963001 41 TCGTAGGATGGTGAGTGTTTCCCTGGGCTTTGCTCATCACT TCGTAGGACGGTGAGTGTTTCCCTGGGCTTTGCTCATCACT < 41bp 1 0.279452257625002 1 0.118180990219116 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS21 ENSG00000171858 CDS Human protein_coding chr20:60962981 chr20:60962969 nonsynonymous SNV 0.999 3 9 hm5C_associated_SNPs_21221 0 0 1 0 2 RPS21 chr20:60962970 5'GT 60962970 Upstream 2bp
chr1 156702198 156702198 1 + G A COAD 156702193 + 156702173 156702213 41 CTGGAGAACCCCAGCCAGAGCTCCCGACTAACAGCTCCATT CTGGAGAACCCCAGCCAGAGCTCCCAACTAACAGCTCCATT < 41bp 1 0.33149003806506 1 0.191849648952484 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156702193 chr1:156702198 nonsynonymous SNV 0.996 0 26 hm5C_associated_SNPs_21222 0 0 1 0 1 RRNAD1 chr1:156702265 5'GT 156702265 Upstream 68bp
chr17 7401131 7401131 1 + C T COAD 7401133 + 7401113 7401153 41 GACCAGGTTGGCGTGCCCCGCTCCATTGCTGCCAACATGAC GACCAGGTTGGCGTGCCCTGCTCCATTGCTGCCAACATGAC < 41bp 1 0.71580831663632 1 0.955549716949463 experiment 0.568383366727359 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR2A ENSG00000181222 CDS Human protein_coding chr17:7401133 chr17:7401131 nonsynonymous SNV 0.995 3 19 hm5C_associated_SNPs_21224 0 0 1 0 1 POLR2A chr17:7401189 5'GT 7401189 Upstream 59bp
chr19 45165067 45165067 1 + G T COAD 45165047 + 45165027 45165067 41 GAGCAGAGAGAACAGCTCTTCCCAGGATCCACAGACAGAGG GAGCAGAGAGAACAGCTCTTCCCAGGATCCACAGACAGAGT < 41bp 1 0.250949652776723 1 0.14600870013237 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45165047 chr19:45165067 nonsynonymous SNV 0.002 3 41 hm5C_associated_SNPs_21227 0 0 1 0 1 PVR chr19:45165007 3'AG 45165007 Downstream 61bp
chr19 45165067 45165067 1 + G T COAD 45165058 + 45165038 45165078 41 ACAGCTCTTCCCAGGATCCACAGACAGAGGGCACAAGGTGA ACAGCTCTTCCCAGGATCCACAGACAGAGTGCACAAGGTGA < 41bp 1 0.213965088100793 1 0.301909506320953 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45165058 chr19:45165067 nonsynonymous SNV 0.002 3 30 hm5C_associated_SNPs_21228 0 0 1 0 1 PVR chr19:45165007 3'AG 45165007 Downstream 61bp
chr19 45165067 45165067 1 + G T COAD 45165071 + 45165051 45165091 41 GGATCCACAGACAGAGGGCACAAGGTGACAGCGTCGGGACT GGATCCACAGACAGAGTGCACAAGGTGACAGCGTCGGGACT < 41bp 1 0.712497944257891 1 0.677631497383118 experiment 0.575004111484219 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45165071 chr19:45165067 nonsynonymous SNV 0.002 3 17 hm5C_associated_SNPs_21229 0 0 1 0 1 PVR chr19:45165007 3'AG 45165007 Downstream 61bp
chr19 45165067 45165067 1 + G T COAD 45165079 + 45165059 45165099 41 AGACAGAGGGCACAAGGTGACAGCGTCGGGACTGAGAGGGG AGACAGAGTGCACAAGGTGACAGCGTCGGGACTGAGAGGGG < 41bp 1 0.736189538640738 1 0.484210312366486 experiment 0.527620922718524 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45165079 chr19:45165067 nonsynonymous SNV 0.002 3 9 hm5C_associated_SNPs_21230 0 0 1 0 1 PVR chr19:45165007 3'AG 45165007 Downstream 61bp
chr19 50906852 50906852 1 + A T COAD 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CGTACCTCATCTCTCGGGCCCAGACCCTCTAGGTGAGGGCT < 41bp 1 0.0683168216152871 1 0.208764910697937 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906852 stopgain 0.996 1 30 hm5C_associated_SNPs_21232 0 0 1 3 1 POLD1 chr19:50906854 5'GT 50906854 Upstream 3bp
chr19 50906852 50906852 1 + A T COAD 50906851 + 50906831 50906871 41 ATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCTGGGCAGGT ATCTCTCGGGCCCAGACCCTCTAGGTGAGGGCTGGGCAGGT < 41bp 1 0.660981640971446 1 0.741741836071014 experiment 0.678036718057107 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906851 chr19:50906852 stopgain 0.996 1 22 hm5C_associated_SNPs_21233 0 0 1 3 1 POLD1 chr19:50906854 5'GT 50906854 Upstream 3bp
chr16 31196294 31196294 1 + T C COAD 31196312 + 31196292 31196332 41 AGTGGTGGTGGCAGTGGTGGCGGTTATGGCAATCAAGACCA AGCGGTGGTGGCAGTGGTGGCGGTTATGGCAATCAAGACCA < 41bp 1 0.566816798755213 1 0.53452867269516 experiment 0.866366402489574 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control FUS ENSG00000089280 CDS Human protein_coding chr16:31196312 chr16:31196294 synonymous SNV . 0 3 hm5C_associated_SNPs_21234 0 0 1 0 1 FUS chr16:31196260 3'AG 31196260 Downstream 35bp
chr12 3149347 3149347 1 + C T COAD 3149330 + 3149310 3149350 41 ACCGCATCCACCGGTCCCCGCTCTGTGAGTACATGATCAAC ACCGCATCCACCGGTCCCCGCTCTGTGAGTACATGATTAAC < 41bp 1 0.142867591569405 1 0.447629988193512 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3149330 chr12:3149347 synonymous SNV . 0 38 hm5C_associated_SNPs_21235 0 0 1 0 2 TEAD4 chr12:3149273 3'AG 3149273 Downstream 75bp
chr12 3149347 3149347 1 + C T COAD 3149330 + 3149310 3149350 41 ACCGCATCCACCGGTCCCCGCTCTGTGAGTACATGATCAAC ACCGCATCCACCGGTCCCCGCTCTGTGAGTACATGATTAAC < 41bp 1 0.142867591569405 1 0.447629988193512 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3149330 chr12:3149347 synonymous SNV . 0 38 hm5C_associated_SNPs_21235 0 0 1 0 2 TEAD4 chr12:3149425 5'GT 3149425 Upstream 79bp
chr1 46871982 46871982 1 + T G COAD 46871992 + 46871972 46872012 41 CGAGCCCTGCTGTGTGAGGACATGTTCCGCTTGGACCCCAC CGAGCCCTGCGGTGTGAGGACATGTTCCGCTTGGACCCCAC < 41bp 1 0.413304750440139 1 0.131112545728683 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAH ENSG00000117480 CDS Human protein_coding chr1:46871992 chr1:46871982 nonsynonymous SNV 0.971 1 11 hm5C_associated_SNPs_21236 0 0 0 0 2 FAAH chr1:46871916 3'AG 46871916 Downstream 67bp
chr1 46871982 46871982 1 + T G COAD 46871992 + 46871972 46872012 41 CGAGCCCTGCTGTGTGAGGACATGTTCCGCTTGGACCCCAC CGAGCCCTGCGGTGTGAGGACATGTTCCGCTTGGACCCCAC < 41bp 1 0.413304750440139 1 0.131112545728683 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAH ENSG00000117480 CDS Human protein_coding chr1:46871992 chr1:46871982 nonsynonymous SNV 0.971 1 11 hm5C_associated_SNPs_21236 0 0 0 0 2 FAAH chr1:46872040 5'GT 46872040 Upstream 59bp
chr14 102499697 102499697 1 + C T COAD 102499701 + 102499681 102499721 41 GACAACCAGCAGAAGGCCAACGAGGTGGAGCAGATGATCCG GACAACCAGCAGAAGGTCAACGAGGTGGAGCAGATGATCCG < 41bp 1 0.351939953558782 1 0.759434223175049 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102499701 chr14:102499697 nonsynonymous SNV 0.997 1 17 hm5C_associated_SNPs_21237 0 0 1 0 1 DYNC1H1 chr14:102499606 3'AG 102499606 Downstream 92bp
chr5 176522651 176522651 1 + C A COAD 176522657 + 176522637 176522677 41 GAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGGTCTCCT GAGCAGTGAGGGGCAGCTCTCCTTCCCAGTCCTGGTCTCCT < 41bp 1 0.0443860503881013 1 0.074124276638031 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522657 chr5:176522651 nonsynonymous SNV 0.449 2 15 hm5C_associated_SNPs_21239 0 0 1 0 1 FGFR4 chr5:176522724 5'GT 176522724 Upstream 74bp
chr14 68042182 68042182 1 + A C COAD 68042177 + 68042157 68042197 41 ATCTTCTACTACTATCGGAGCCATGAGGACAAGGTACTTCT ATCTTCTACTACTATCGGAGCCATGCGGACAAGGTACTTCT < 41bp 1 0.0319939013228803 1 0.0617979168891907 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68042177 chr14:68042182 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_21240 0 0 1 0 2 PLEKHH1 chr14:68042109 3'AG 68042109 Downstream 74bp
chr14 68042182 68042182 1 + A C COAD 68042177 + 68042157 68042197 41 ATCTTCTACTACTATCGGAGCCATGAGGACAAGGTACTTCT ATCTTCTACTACTATCGGAGCCATGCGGACAAGGTACTTCT < 41bp 1 0.0319939013228803 1 0.0617979168891907 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68042177 chr14:68042182 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_21240 0 0 1 0 2 PLEKHH1 chr14:68042189 5'GT 68042189 Upstream 8bp
chr4 15008959 15008959 1 + C A COAD 15008941 + 15008921 15008961 41 TTCCCTAGCCTCTTCTGAAACAGTCTCCCTGGAGCAACCAT TTCCCTAGCCTCTTCTGAAACAGTCTCCCTGGAGCAACAAT < 41bp 1 0.169216283971315 1 0.0897606909275055 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15008941 chr4:15008959 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_21242 0 0 0 0 1 CPEB2 chr4:15008929 3'AG 15008929 Downstream 31bp
chr22 32445975 32445975 1 + G A COAD 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGGACTGTTGGAGGCTTCTTCCTGACAGGCCGAAGTATGGT < 41bp 1 0.38383741670314 1 0.25482451915741 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445975 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_21243 0 0 0 0 2 SLC5A1 chr22:32445930 3'AG 32445930 Downstream 46bp
chr22 32445975 32445975 1 + G A COAD 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGGACTGTTGGAGGCTTCTTCCTGACAGGCCGAAGTATGGT < 41bp 1 0.38383741670314 1 0.25482451915741 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445975 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_21243 0 0 0 0 2 SLC5A1 chr22:32446001 5'GT 32446001 Upstream 27bp
chr11 65827422 65827422 1 + T G COAD 65827410 + 65827390 65827430 41 CAAACGGGGCATTGAGAAGCCCCCCTTCGAGCTGCCAGACT CAAACGGGGCATTGAGAAGCCCCCCTTCGAGCGGCCAGACT < 41bp 1 0.164050399046785 1 0.0402333736419678 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827410 chr11:65827422 nonsynonymous SNV 0.998 4 33 hm5C_associated_SNPs_21244 0 0 1 0 1 SF3B2 chr11:65827480 5'GT 65827480 Upstream 59bp
chr20 30898885 30898885 1 + T C COAD 30898904 + 30898884 30898924 41 TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGAGAAA TCGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGAGAAA < 41bp 1 0.509503283050138 1 0.368216991424561 experiment 0.980993433899724 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898904 chr20:30898885 synonymous SNV . 0 2 hm5C_associated_SNPs_21245 0 0 1 0 2 KIF3B chr20:30898832 3'AG 30898832 Downstream 54bp
chr20 30898885 30898885 1 + T C COAD 30898904 + 30898884 30898924 41 TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGAGAAA TCGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGAGAAA < 41bp 1 0.509503283050138 1 0.368216991424561 experiment 0.980993433899724 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898904 chr20:30898885 synonymous SNV . 0 2 hm5C_associated_SNPs_21245 0 0 1 0 2 KIF3B chr20:30898984 5'GT 30898984 Upstream 100bp
chr7 150765114 150765114 1 + C T COAD 150765104 + 150765084 150765124 41 CACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCG CACGTGGCCTCCCTCTCCTTCCGCAGTCTCTTGGAGCTCCG < 41bp 1 0.525630587876841 1 0.508496642112732 experiment 0.948738824246318 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765104 chr7:150765114 synonymous SNV . 0 31 hm5C_associated_SNPs_21246 0 0 1 0 1 SLC4A2 chr7:150765141 5'GT 150765141 Upstream 28bp
chr7 150765114 150765114 1 + C T COAD 150765105 + 150765085 150765125 41 ACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCGC ACGTGGCCTCCCTCTCCTTCCGCAGTCTCTTGGAGCTCCGC < 41bp 1 0.488814112477215 1 0.685255408287048 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765105 chr7:150765114 synonymous SNV . 0 30 hm5C_associated_SNPs_21247 0 0 1 0 1 SLC4A2 chr7:150765141 5'GT 150765141 Upstream 28bp
chr10 94757358 94757358 1 + T C COAD 94757363 + 94757343 94757383 41 AGTTTAACTTAGATGTCATACAGTGTGAATGTAAGTACTAT AGTTTAACTTAGATGCCATACAGTGTGAATGTAAGTACTAT < 41bp 1 0.20934229687425 1 0.141951501369476 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC6 ENSG00000138190 CDS Human protein_coding chr10:94757363 chr10:94757358 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_21248 0 0 1 1 1 EXOC6 chr10:94757372 5'GT 94757372 Upstream 15bp
chr22 42273351 42273351 1 + A G COAD 42273332 + 42273312 42273352 41 TCCTGTGCCTCTCCTTTAACCCCCTGACTTCCCTGCTGCAG TCCTGTGCCTCTCCTTTAACCCCCTGACTTCCCTGCTGCGG < 41bp 1 0.232544722911131 1 0.0381689667701721 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42273332 chr22:42273351 nonsynonymous SNV 0.996 0 40 hm5C_associated_SNPs_21249 0 0 1 0 1 SREBF2 chr22:42273425 5'GT 42273425 Upstream 75bp
chr13 111156531 111156531 1 + G A COAD 111156524 + 111156504 111156544 41 GGGCTCCAGGGAAAGCTGGGCCCCAAGGAAGAGGTGGTGTG GGGCTCCAGGGAAAGCTGGGCCCCAAGAAAGAGGTGGTGTG < 41bp 1 0.104832986973733 1 0.163715392351151 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111156524 chr13:111156531 nonsynonymous SNV 0.997 5 28 hm5C_associated_SNPs_21250 0 0 1 0 2 COL4A2 chr13:111156495 3'AG 111156495 Downstream 37bp
chr13 111156531 111156531 1 + G A COAD 111156524 + 111156504 111156544 41 GGGCTCCAGGGAAAGCTGGGCCCCAAGGAAGAGGTGGTGTG GGGCTCCAGGGAAAGCTGGGCCCCAAGAAAGAGGTGGTGTG < 41bp 1 0.104832986973733 1 0.163715392351151 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111156524 chr13:111156531 nonsynonymous SNV 0.997 5 28 hm5C_associated_SNPs_21250 0 0 1 0 2 COL4A2 chr13:111156611 5'GT 111156611 Upstream 81bp
chr13 111156531 111156531 1 + G A COAD 111156527 + 111156507 111156547 41 CTCCAGGGAAAGCTGGGCCCCAAGGAAGAGGTGGTGTGTCT CTCCAGGGAAAGCTGGGCCCCAAGAAAGAGGTGGTGTGTCT < 41bp 1 0.366382643377201 1 0.36821186542511 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111156527 chr13:111156531 nonsynonymous SNV 0.997 5 25 hm5C_associated_SNPs_21251 0 0 1 0 2 COL4A2 chr13:111156495 3'AG 111156495 Downstream 37bp
chr13 111156531 111156531 1 + G A COAD 111156527 + 111156507 111156547 41 CTCCAGGGAAAGCTGGGCCCCAAGGAAGAGGTGGTGTGTCT CTCCAGGGAAAGCTGGGCCCCAAGAAAGAGGTGGTGTGTCT < 41bp 1 0.366382643377201 1 0.36821186542511 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111156527 chr13:111156531 nonsynonymous SNV 0.997 5 25 hm5C_associated_SNPs_21251 0 0 1 0 2 COL4A2 chr13:111156611 5'GT 111156611 Upstream 81bp
chrX 70344184 70344184 1 + T C COAD 70344193 + 70344173 70344213 41 TTTGATGATCCTGCCGATGACCCAGAGCACAAGGAGGCTGA TTTGATGATCCCGCCGATGACCCAGAGCACAAGGAGGCTGA < 41bp 1 0.400411652983458 1 0.101434111595154 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70344193 chrX:70344184 synonymous SNV . 0 12 hm5C_associated_SNPs_21252 0 0 1 0 1 MED12 chrX:70344238 5'GT 70344238 Upstream 55bp
chr11 71946463 71946463 1 + C T COAD 71946459 + 71946439 71946479 41 GCTCCATGAAGGTGCGGGTGCCCACGGAGCGCCTGGGCACC GCTCCATGAAGGTGCGGGTGCCCATGGAGCGCCTGGGCACC < 41bp 1 0.151934482487358 1 0.0787728726863861 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946459 chr11:71946463 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_21253 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 33bp
chr11 71946463 71946463 1 + C T COAD 71946460 + 71946440 71946480 41 CTCCATGAAGGTGCGGGTGCCCACGGAGCGCCTGGGCACCC CTCCATGAAGGTGCGGGTGCCCATGGAGCGCCTGGGCACCC < 41bp 1 0.169982803613556 1 0.0974763035774231 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946460 chr11:71946463 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_21254 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 33bp
chr11 71946463 71946463 1 + C T COAD 71946461 + 71946441 71946481 41 TCCATGAAGGTGCGGGTGCCCACGGAGCGCCTGGGCACCCG TCCATGAAGGTGCGGGTGCCCATGGAGCGCCTGGGCACCCG < 41bp 1 0.687574126205146 1 0.484471380710602 experiment 0.624851747589708 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946461 chr11:71946463 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_21255 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 33bp
chr11 71946463 71946463 1 + C T COAD 71946476 + 71946456 71946496 41 GTGCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGG GTGCCCATGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGG < 41bp 1 0.446711642456497 1 0.0574996471405029 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946476 chr11:71946463 nonsynonymous SNV 0.997 2 8 hm5C_associated_SNPs_21256 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 33bp
chr11 71946463 71946463 1 + C T COAD 71946478 + 71946458 71946498 41 GCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTG GCCCATGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTG < 41bp 1 0.381503080346307 1 0.0913842916488647 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946478 chr11:71946463 nonsynonymous SNV 0.997 2 6 hm5C_associated_SNPs_21257 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 33bp
chr11 71946463 71946463 1 + C T COAD 71946479 + 71946459 71946499 41 CCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTGG CCCATGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTGG < 41bp 1 0.187997047257427 1 0.478575736284256 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946479 chr11:71946463 nonsynonymous SNV 0.997 2 5 hm5C_associated_SNPs_21258 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 33bp
chr11 71946463 71946463 1 + C T COAD 71946480 + 71946460 71946500 41 CCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTGGG CCATGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTGGG < 41bp 1 0.75846273735803 1 0.536078929901123 experiment 0.48307452528394 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946480 chr11:71946463 nonsynonymous SNV 0.997 2 4 hm5C_associated_SNPs_21259 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 33bp
chrX 110951604 110951604 1 + C T COAD 110951614 + 110951594 110951634 41 TTGCCTCTTTCGGGCCATTTCGGAGCAGGTAAAAGGAAAAC TTGCCTCTTTTGGGCCATTTCGGAGCAGGTAAAAGGAAAAC < 41bp 1 0.738175600327326 1 0.849924564361572 experiment 0.523648799345348 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG13 ENSG00000101901 CDS Human protein_coding chrX:110951614 chrX:110951604 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_21260 0 0 1 0 1 ALG13 chrX:110951621 5'GT 110951621 Upstream 18bp
chrX 110951604 110951604 1 + C T COAD 110951619 + 110951599 110951639 41 TCTTTCGGGCCATTTCGGAGCAGGTAAAAGGAAAACATATC TCTTTTGGGCCATTTCGGAGCAGGTAAAAGGAAAACATATC < 41bp 1 0.512082480574957 1 0.844595551490784 experiment 0.975835038850087 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG13 ENSG00000101901 CDS Human protein_coding chrX:110951619 chrX:110951604 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_21261 0 0 1 0 1 ALG13 chrX:110951621 5'GT 110951621 Upstream 18bp
chr19 47491293 47491293 1 + A G COAD 47491274 + 47491254 47491294 41 ACGGAAGGCATCTACCGGGTCAGCGGGAACAAGTCTGAGAT ACGGAAGGCATCTACCGGGTCAGCGGGAACAAGTCTGAGGT < 41bp 1 0.557692493408008 1 0.621991693973541 experiment 0.884615013183983 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491274 chr19:47491293 nonsynonymous SNV 0.993 1 40 hm5C_associated_SNPs_21262 0 0 1 0 2 ARHGAP35 chr19:47491246 3'AG 47491246 Downstream 48bp
chr19 47491293 47491293 1 + A G COAD 47491274 + 47491254 47491294 41 ACGGAAGGCATCTACCGGGTCAGCGGGAACAAGTCTGAGAT ACGGAAGGCATCTACCGGGTCAGCGGGAACAAGTCTGAGGT < 41bp 1 0.557692493408008 1 0.621991693973541 experiment 0.884615013183983 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491274 chr19:47491293 nonsynonymous SNV 0.993 1 40 hm5C_associated_SNPs_21262 0 0 1 0 2 ARHGAP35 chr19:47491323 5'GT 47491323 Upstream 31bp
chr19 47491293 47491293 1 + A G COAD 47491283 + 47491263 47491303 41 ATCTACCGGGTCAGCGGGAACAAGTCTGAGATGGAGAGTCT ATCTACCGGGTCAGCGGGAACAAGTCTGAGGTGGAGAGTCT < 41bp 1 0.333232060282846 1 0.214171260595322 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491283 chr19:47491293 nonsynonymous SNV 0.993 1 31 hm5C_associated_SNPs_21263 0 0 1 0 2 ARHGAP35 chr19:47491246 3'AG 47491246 Downstream 48bp
chr19 47491293 47491293 1 + A G COAD 47491283 + 47491263 47491303 41 ATCTACCGGGTCAGCGGGAACAAGTCTGAGATGGAGAGTCT ATCTACCGGGTCAGCGGGAACAAGTCTGAGGTGGAGAGTCT < 41bp 1 0.333232060282846 1 0.214171260595322 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491283 chr19:47491293 nonsynonymous SNV 0.993 1 31 hm5C_associated_SNPs_21263 0 0 1 0 2 ARHGAP35 chr19:47491323 5'GT 47491323 Upstream 31bp
chr11 489666 489666 1 + C T COAD 489680 + 489660 489700 41 CTCCTGCGGCTCGTCTTCTTCGTGAACGTGGGTGGCGTGGC CTCCTGTGGCTCGTCTTCTTCGTGAACGTGGGTGGCGTGGC < 41bp 1 0.735653580451918 1 0.851369142532349 experiment 0.528692839096165 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control PTDSS2 ENSG00000174915 CDS Human protein_coding chr11:489680 chr11:489666 nonsynonymous SNV 0.871 4 7 hm5C_associated_SNPs_21265 0 0 0 0 2 PTDSS2 chr11:489588 3'AG 489588 Downstream 79bp
chr11 489666 489666 1 + C T COAD 489680 + 489660 489700 41 CTCCTGCGGCTCGTCTTCTTCGTGAACGTGGGTGGCGTGGC CTCCTGTGGCTCGTCTTCTTCGTGAACGTGGGTGGCGTGGC < 41bp 1 0.735653580451918 1 0.851369142532349 experiment 0.528692839096165 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control PTDSS2 ENSG00000174915 CDS Human protein_coding chr11:489680 chr11:489666 nonsynonymous SNV 0.871 4 7 hm5C_associated_SNPs_21265 0 0 0 0 2 PTDSS2 chr11:489733 5'GT 489733 Upstream 68bp
chr19 45260389 45260389 1 + C T COAD 45260397 + 45260377 45260417 41 CCGCTCACCTGGCGTGCGAGCACCGCAGCCCGACCTGCCTG CCGCTCACCTGGTGTGCGAGCACCGCAGCCCGACCTGCCTG < 41bp 1 0.685256673040648 1 0.23627308011055 experiment 0.629486653918703 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCL3 ENSG00000069399 CDS Human protein_coding chr19:45260397 chr19:45260389 nonsynonymous SNV 0.982 4 13 hm5C_associated_SNPs_21267 0 0 0 0 1 BCL3 chr19:45260478 5'GT 45260478 Upstream 90bp
chr6 44219828 44219828 1 + G A COAD 44219814 + 44219794 44219834 41 CTTCGAGGTGGTATATATGACCGAGCCCATTGACGAGTACT CTTCGAGGTGGTATATATGACCGAGCCCATTGACAAGTACT < 41bp 1 0.310169364321415 1 0.176223248243332 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219814 chr6:44219828 nonsynonymous SNV 0.981 3 35 hm5C_associated_SNPs_21268 0 0 1 0 1 HSP90AB1 chr6:44219736 3'AG 44219736 Downstream 93bp
chr6 44219828 44219828 1 + G A COAD 44219827 + 44219807 44219847 41 TATATGACCGAGCCCATTGACGAGTACTGTGTGCAGCAGCT TATATGACCGAGCCCATTGACAAGTACTGTGTGCAGCAGCT < 41bp 1 0.607353474663266 1 0.278866142034531 experiment 0.785293050673467 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219827 chr6:44219828 nonsynonymous SNV 0.981 3 22 hm5C_associated_SNPs_21269 0 0 1 0 1 HSP90AB1 chr6:44219736 3'AG 44219736 Downstream 93bp
chr6 44219828 44219828 1 + G A COAD 44219833 + 44219813 44219853 41 ACCGAGCCCATTGACGAGTACTGTGTGCAGCAGCTCAAGGA ACCGAGCCCATTGACAAGTACTGTGTGCAGCAGCTCAAGGA < 41bp 1 0.517155841469814 1 0.0437709391117096 experiment 0.965688317060373 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219833 chr6:44219828 nonsynonymous SNV 0.981 3 16 hm5C_associated_SNPs_21270 0 0 1 0 1 HSP90AB1 chr6:44219736 3'AG 44219736 Downstream 93bp
chr6 44219828 44219828 1 + G A COAD 44219840 + 44219820 44219860 41 CCATTGACGAGTACTGTGTGCAGCAGCTCAAGGAATTTGAT CCATTGACAAGTACTGTGTGCAGCAGCTCAAGGAATTTGAT < 41bp 1 0.577618427337151 1 0.167949378490448 experiment 0.844763145325699 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219840 chr6:44219828 nonsynonymous SNV 0.981 3 9 hm5C_associated_SNPs_21271 0 0 1 0 1 HSP90AB1 chr6:44219736 3'AG 44219736 Downstream 93bp
chr6 44219828 44219828 1 + G A COAD 44219846 + 44219826 44219866 41 ACGAGTACTGTGTGCAGCAGCTCAAGGAATTTGATGGGAAG ACAAGTACTGTGTGCAGCAGCTCAAGGAATTTGATGGGAAG < 41bp 1 0.754335485204844 1 0.46266707777977 experiment 0.491329029590312 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219846 chr6:44219828 nonsynonymous SNV 0.981 3 3 hm5C_associated_SNPs_21272 0 0 1 0 1 HSP90AB1 chr6:44219736 3'AG 44219736 Downstream 93bp
chr5 153709265 153709265 1 + G A COAD 153709248 + 153709228 153709268 41 CAGTGTGCTCAATCGCTCGCCTCCAGAGCTGGTCGCCGAGA CAGTGTGCTCAATCGCTCGCCTCCAGAGCTGGTCGCCAAGA < 41bp 1 0.648627647382025 1 0.919338941574097 experiment 0.702744705235951 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153709248 chr5:153709265 nonsynonymous SNV 0.910 3 38 hm5C_associated_SNPs_21274 0 0 0 0 1 GALNT10 chr5:153709298 5'GT 153709298 Upstream 34bp
chr1 32691779 32691779 1 + G A COAD 32691784 + 32691764 32691804 41 GACTCCAGGAAAGCAGCTGGCCCTTCTCAAGACCAATTCGG GACTCCAGGAAAGCAACTGGCCCTTCTCAAGACCAATTCGG < 41bp 1 0.136060737607683 1 0.0296127200126648 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF3I ENSG00000084623 CDS Human protein_coding chr1:32691784 chr1:32691779 synonymous SNV . 0 16 hm5C_associated_SNPs_21275 0 0 1 0 1 EIF3I chr1:32691772 3'AG 32691772 Downstream 8bp
chr7 99702556 99702556 1 + C T COAD 99702547 + 99702527 99702567 41 GAGATTCGGCTCAAGAGCTTCCTTCCTAGCGGCTCTGGTGA GAGATTCGGCTCAAGAGCTTCCTTCCTAGTGGCTCTGGTGA < 41bp 1 0.0174602120797548 1 0.0800391137599945 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99702547 chr7:99702556 synonymous SNV . 0 30 hm5C_associated_SNPs_21276 0 0 1 0 2 AP4M1 chr7:99702497 3'AG 99702497 Downstream 60bp
chr7 99702556 99702556 1 + C T COAD 99702547 + 99702527 99702567 41 GAGATTCGGCTCAAGAGCTTCCTTCCTAGCGGCTCTGGTGA GAGATTCGGCTCAAGAGCTTCCTTCCTAGTGGCTCTGGTGA < 41bp 1 0.0174602120797548 1 0.0800391137599945 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99702547 chr7:99702556 synonymous SNV . 0 30 hm5C_associated_SNPs_21276 0 0 1 0 2 AP4M1 chr7:99702563 5'GT 99702563 Upstream 8bp
chr11 75280000 75280000 1 + C T COAD 75279988 + 75279968 75280008 41 TCCGCTCCTCTCCCAGGCCTCTACAACTACTACGACGACGA TCCGCTCCTCTCCCAGGCCTCTACAACTACTATGACGACGA < 41bp 1 0.557865083505675 1 0.852529644966125 experiment 0.88426983298865 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279988 chr11:75280000 synonymous SNV . 0 33 hm5C_associated_SNPs_21278 0 0 1 0 1 SERPINH1 chr11:75279984 3'AG 75279984 Downstream 17bp
chr11 75280000 75280000 1 + C T COAD 75280006 + 75279986 75280026 41 CTCTACAACTACTACGACGACGAGAAGGAAAAGCTGCAAAT CTCTACAACTACTATGACGACGAGAAGGAAAAGCTGCAAAT < 41bp 1 0.763368515691037 1 0.552509248256683 experiment 0.473262968617925 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75280006 chr11:75280000 synonymous SNV . 0 15 hm5C_associated_SNPs_21279 0 0 1 0 1 SERPINH1 chr11:75279984 3'AG 75279984 Downstream 17bp
chr15 91035818 91035818 1 + C T COAD 91035817 + 91035797 91035837 41 GTACCGACAGAGGAGAAAGGCCGAACTAGTGAAACTGCAAC GTACCGACAGAGGAGAAAGGCTGAACTAGTGAAACTGCAAC < 41bp 1 0.557911884187812 1 0.233673244714737 experiment 0.884176231624375 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IQGAP1 ENSG00000140575 CDS Human protein_coding chr15:91035817 chr15:91035818 synonymous SNV . 0 22 hm5C_associated_SNPs_21281 0 0 1 0 1 IQGAP1 chr15:91035777 3'AG 91035777 Downstream 42bp
chr16 1825289 1825289 1 + C T COAD 1825308 + 1825288 1825328 41 GCGGGGAGGAATGGTCACCTCTGCTCAGGTCTCGCCAGCAC GTGGGGAGGAATGGTCACCTCTGCTCAGGTCTCGCCAGCAC < 41bp 1 0.761135245275972 1 0.276362836360931 experiment 0.477729509448057 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EME2 ENSG00000197774 CDS Human protein_coding chr16:1825308 chr16:1825289 synonymous SNV . 0 2 hm5C_associated_SNPs_21282 0 0 1 0 1 EME2 chr16:1825240 3'AG 1825240 Downstream 50bp
chr7 150765102 150765102 1 + T C COAD 150765104 + 150765084 150765124 41 CACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCG CACGTGGCCTCCCTCTCCCTCCGCAGTCTCCTGGAGCTCCG < 41bp 1 0.595423292104976 1 0.553608179092407 experiment 0.809153415790047 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765104 chr7:150765102 nonsynonymous SNV 0.996 2 19 hm5C_associated_SNPs_21283 0 0 1 0 1 SLC4A2 chr7:150765141 5'GT 150765141 Upstream 40bp
chr7 150765102 150765102 1 + T C COAD 150765105 + 150765085 150765125 41 ACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCGC ACGTGGCCTCCCTCTCCCTCCGCAGTCTCCTGGAGCTCCGC < 41bp 1 0.442074787249162 1 0.760238587856293 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765105 chr7:150765102 nonsynonymous SNV 0.996 2 18 hm5C_associated_SNPs_21284 0 0 1 0 1 SLC4A2 chr7:150765141 5'GT 150765141 Upstream 40bp
chr19 1453530 1453530 1 + C T COAD 1453533 + 1453513 1453553 41 GAGGGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAG GAGGGCAGCCCAGTACATGGCTCCGGGCCCTCCAAGGACAG < 41bp 1 0.389436554654945 1 0.553388714790344 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453533 chr19:1453530 synonymous SNV . 0 18 hm5C_associated_SNPs_21285 0 0 0 0 1 APC2 chr19:1453610 5'GT 1453610 Upstream 81bp
chr19 1453530 1453530 1 + C T COAD 1453535 + 1453515 1453555 41 GGGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCT GGGCAGCCCAGTACATGGCTCCGGGCCCTCCAAGGACAGCT < 41bp 1 0.187054642813911 1 0.7112717628479 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453535 chr19:1453530 synonymous SNV . 0 16 hm5C_associated_SNPs_21286 0 0 0 0 1 APC2 chr19:1453610 5'GT 1453610 Upstream 81bp
chr19 1453530 1453530 1 + C T COAD 1453536 + 1453516 1453556 41 GGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCTT GGCAGCCCAGTACATGGCTCCGGGCCCTCCAAGGACAGCTT < 41bp 1 0.196943024783374 1 0.668942213058472 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453536 chr19:1453530 synonymous SNV . 0 15 hm5C_associated_SNPs_21287 0 0 0 0 1 APC2 chr19:1453610 5'GT 1453610 Upstream 81bp
chr19 1453530 1453530 1 + C T COAD 1453540 + 1453520 1453560 41 GCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCTTTGGG GCCCAGTACATGGCTCCGGGCCCTCCAAGGACAGCTTTGGG < 41bp 1 0.013961888140364 1 0.0636919438838959 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453540 chr19:1453530 synonymous SNV . 0 11 hm5C_associated_SNPs_21288 0 0 0 0 1 APC2 chr19:1453610 5'GT 1453610 Upstream 81bp
chr19 1453530 1453530 1 + C T COAD 1453541 + 1453521 1453561 41 CCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCTTTGGGG CCCAGTACATGGCTCCGGGCCCTCCAAGGACAGCTTTGGGG < 41bp 1 0.01441357905748 1 0.0920652747154236 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453541 chr19:1453530 synonymous SNV . 0 10 hm5C_associated_SNPs_21289 0 0 0 0 1 APC2 chr19:1453610 5'GT 1453610 Upstream 81bp
chr6 43417214 43417214 1 + C T COAD 43417228 + 43417208 43417248 41 CAGCTGCTCCAGCAGACCATCTGCAAACGCTTTGCCAACAA CAGCTGTTCCAGCAGACCATCTGCAAACGCTTTGCCAACAA < 41bp 1 0.76892379672168 1 0.877745270729065 experiment 0.462152406556641 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43417228 chr6:43417214 nonsynonymous SNV 0.998 4 7 hm5C_associated_SNPs_21290 0 0 1 0 2 ABCC10 chr6:43417160 3'AG 43417160 Downstream 55bp
chr6 43417214 43417214 1 + C T COAD 43417228 + 43417208 43417248 41 CAGCTGCTCCAGCAGACCATCTGCAAACGCTTTGCCAACAA CAGCTGTTCCAGCAGACCATCTGCAAACGCTTTGCCAACAA < 41bp 1 0.76892379672168 1 0.877745270729065 experiment 0.462152406556641 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43417228 chr6:43417214 nonsynonymous SNV 0.998 4 7 hm5C_associated_SNPs_21290 0 0 1 0 2 ABCC10 chr6:43417272 5'GT 43417272 Upstream 59bp
chr19 17887057 17887057 1 + G A COAD 17887060 + 17887040 17887080 41 CCCACTTTGTCCACAGGGCACCATGAAACGCCATTCTTCAC CCCACTTTGTCCACAGGACACCATGAAACGCCATTCTTCAC < 41bp 1 0.0907364529152056 1 0.0377376675605774 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17887060 chr19:17887057 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_21293 0 0 1 0 2 FCHO1 chr19:17887056 3'AG 17887056 Downstream 2bp
chr19 17887057 17887057 1 + G A COAD 17887060 + 17887040 17887080 41 CCCACTTTGTCCACAGGGCACCATGAAACGCCATTCTTCAC CCCACTTTGTCCACAGGACACCATGAAACGCCATTCTTCAC < 41bp 1 0.0907364529152056 1 0.0377376675605774 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17887060 chr19:17887057 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_21293 0 0 1 0 2 FCHO1 chr19:17887080 5'GT 17887080 Upstream 24bp
chr11 45882569 45882569 1 + C T COAD 45882565 + 45882545 45882585 41 ACGACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGT ACGACGAGACCTACGGCGTGCCCTTCCTGGAGGAGCTGGGT < 41bp 1 0.038091160818984 1 0.0399195849895477 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45882565 chr11:45882569 nonsynonymous SNV 0.994 2 25 hm5C_associated_SNPs_21294 0 0 1 0 1 CRY2 chr11:45882583 5'GT 45882583 Upstream 15bp
chr11 45882569 45882569 1 + C T COAD 45882566 + 45882546 45882586 41 CGACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGTG CGACGAGACCTACGGCGTGCCCTTCCTGGAGGAGCTGGGTG < 41bp 1 0.0187387071984877 1 0.0332096219062805 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45882566 chr11:45882569 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_21295 0 0 1 0 1 CRY2 chr11:45882583 5'GT 45882583 Upstream 15bp
chr19 44732672 44732672 1 + G T COAD 44732653 + 44732633 44732673 41 TCTCCAGGGAGGAACTGCGACTGCTCGATCTTACCCAGAGG TCTCCAGGGAGGAACTGCGACTGCTCGATCTTACCCAGATG < 41bp 1 0.657877746646365 1 0.236258119344711 experiment 0.68424450670727 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF227 ENSG00000131115 CDS Human protein_coding chr19:44732653 chr19:44732672 nonsynonymous SNV 0.888 2 40 hm5C_associated_SNPs_21296 0 0 1 0 3 ZNF227 chr19:44732599 3'AG 44732599 Downstream 74bp
chr19 44732672 44732672 1 + G T COAD 44732653 + 44732633 44732673 41 TCTCCAGGGAGGAACTGCGACTGCTCGATCTTACCCAGAGG TCTCCAGGGAGGAACTGCGACTGCTCGATCTTACCCAGATG < 41bp 1 0.657877746646365 1 0.236258119344711 experiment 0.68424450670727 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF227 ENSG00000131115 CDS Human protein_coding chr19:44732653 chr19:44732672 nonsynonymous SNV 0.888 2 40 hm5C_associated_SNPs_21296 0 0 1 0 3 ZNF227 chr19:44732640 3'AG 44732640 Downstream 33bp
chr19 44732672 44732672 1 + G T COAD 44732653 + 44732633 44732673 41 TCTCCAGGGAGGAACTGCGACTGCTCGATCTTACCCAGAGG TCTCCAGGGAGGAACTGCGACTGCTCGATCTTACCCAGATG < 41bp 1 0.657877746646365 1 0.236258119344711 experiment 0.68424450670727 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF227 ENSG00000131115 CDS Human protein_coding chr19:44732653 chr19:44732672 nonsynonymous SNV 0.888 2 40 hm5C_associated_SNPs_21296 0 0 1 0 3 ZNF227 chr19:44732725 5'GT 44732725 Upstream 54bp
chr11 34129840 34129840 1 + G T COAD 34129843 + 34129823 34129863 41 AGTAGCTGAGCGGCAAAGATCTCTCTTTGTTGTAGTTGGGG AGTAGCTGAGCGGCAAATATCTCTCTTTGTTGTAGTTGGGG < 41bp 1 0.271759313582372 1 0.109573721885681 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129843 chr11:34129840 nonsynonymous SNV 0.994 4 18 hm5C_associated_SNPs_21298 0 0 1 0 2 NAT10 chr11:34129758 3'AG 34129758 Downstream 83bp
chr11 34129840 34129840 1 + G T COAD 34129843 + 34129823 34129863 41 AGTAGCTGAGCGGCAAAGATCTCTCTTTGTTGTAGTTGGGG AGTAGCTGAGCGGCAAATATCTCTCTTTGTTGTAGTTGGGG < 41bp 1 0.271759313582372 1 0.109573721885681 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129843 chr11:34129840 nonsynonymous SNV 0.994 4 18 hm5C_associated_SNPs_21298 0 0 1 0 2 NAT10 chr11:34129880 5'GT 34129880 Upstream 41bp
chr15 29385292 29385292 1 + G A COAD 29385286 + 29385266 29385306 41 GCCCTCCTTCAGTTCCAGGGCCCTGCGAACCAGAAGACCTC GCCCTCCTTCAGTTCCAGGGCCCTGCAAACCAGAAGACCTC < 41bp 1 0.0674557265350844 1 0.403642982244492 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APBA2 ENSG00000034053 CDS Human protein_coding chr15:29385286 chr15:29385292 nonsynonymous SNV 0.986 3 27 hm5C_associated_SNPs_21299 0 0 1 0 1 APBA2 chr15:29385278 3'AG 29385278 Downstream 15bp
chr4 146576305 146576305 1 + C T COAD 146576316 + 146576296 146576336 41 TAGGTAATTCGTATTTCTGCCCGAAGTGGAGAGGGGATCTC TAGGTAATTTGTATTTCTGCCCGAAGTGGAGAGGGGATCTC < 41bp 1 0.558577947267233 1 0.105020552873611 experiment 0.882844105465534 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MMAA ENSG00000151611 CDS Human protein_coding chr4:146576316 chr4:146576305 nonsynonymous SNV 0.997 5 10 hm5C_associated_SNPs_21300 0 0 0 0 1 MMAA chr4:146576299 3'AG 146576299 Downstream 7bp
chr17 37650845 37650845 1 + C T COAD 37650826 + 37650806 37650846 41 CTAGACAATGAGAAAGAGGGCTTCCCAATCACAGCCATTCG CTAGACAATGAGAAAGAGGGCTTCCCAATCACAGCCATTTG < 41bp 1 0.0615049326231982 1 0.0350470244884491 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37650826 chr17:37650845 nonsynonymous SNV 0.998 4 40 hm5C_associated_SNPs_21302 0 0 1 0 1 CDK12 chr17:37650777 3'AG 37650777 Downstream 69bp
chr1 78325044 78325044 1 + A G COAD 78325041 + 78325021 78325061 41 GGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA GGAGACAGTGATTTTCTTGCCAAGCTTCACTGTATTCGACA < 41bp 1 0.399853747371745 1 0.193935185670853 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78325041 chr1:78325044 synonymous SNV . 0 24 hm5C_associated_SNPs_21303 0 0 0 1 2 MIGA1 chr1:78324999 3'AG 78324999 Downstream 46bp
chr1 78325044 78325044 1 + A G COAD 78325041 + 78325021 78325061 41 GGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA GGAGACAGTGATTTTCTTGCCAAGCTTCACTGTATTCGACA < 41bp 1 0.399853747371745 1 0.193935185670853 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78325041 chr1:78325044 synonymous SNV . 0 24 hm5C_associated_SNPs_21303 0 0 0 1 2 MIGA1 chr1:78325071 5'GT 78325071 Upstream 28bp
chr1 228470930 228470930 1 + C T COAD 228470936 + 228470916 228470956 41 CTCAAGGACGCGGGCGAGTACACGTGTGAGGTGGAGGCTTC CTCAAGGACGCGGGTGAGTACACGTGTGAGGTGGAGGCTTC < 41bp 1 0.202268180374265 1 0.262878060340881 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228470936 chr1:228470930 synonymous SNV . 0 15 hm5C_associated_SNPs_21304 0 0 0 0 1 OBSCN chr1:228470985 5'GT 228470985 Upstream 56bp
chr10 70968411 70968411 1 + G T COAD 70968402 + 70968382 70968422 41 ATGCCAGCCTTATTCGAGATCTCCAGAAAGAACTAGATGGT ATGCCAGCCTTATTCGAGATCTCCAGAAATAACTAGATGGT < 41bp 1 0.729940923178751 1 0.864943861961365 experiment 0.540118153642498 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SUPV3L1 ENSG00000156502 CDS Human protein_coding chr10:70968402 chr10:70968411 stopgain 0.993 1 30 hm5C_associated_SNPs_21306 0 0 1 0 1 SUPV3L1 chr10:70968356 3'AG 70968356 Downstream 56bp
chr4 44680726 44680726 1 + G A COAD 44680719 + 44680699 44680739 41 TGGGGCCGCGCTTCTGGTGGCCCCGGGGCCCCGGTCCGCGC TGGGGCCGCGCTTCTGGTGGCCCCGGGACCCCGGTCCGCGC < 41bp 1 0.771833518536432 1 0.199148535728455 experiment 0.456332962927136 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GUF1 ENSG00000151806 CDS Human protein_coding chr4:44680719 chr4:44680726 synonymous SNV . 0 28 hm5C_associated_SNPs_21307 0 0 0 0 1 GUF1 chr4:44680804 5'GT 44680804 Upstream 79bp
chr1 158988024 158988024 1 + G A COAD 158988036 + 158988016 158988056 41 CAGAACCCGAAAACAGTGGCCAAATGTCAGGTAACTCCCAG CAGAACCCAAAAACAGTGGCCAAATGTCAGGTAACTCCCAG < 41bp 1 0.272767642410078 1 0.690911531448364 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout IFI16 ENSG00000163565 CDS Human protein_coding chr1:158988036 chr1:158988024 synonymous SNV . 0 9 hm5C_associated_SNPs_21308 0 0 0 0 1 IFI16 chr1:158988019 3'AG 158988019 Downstream 6bp
chr1 47838753 47838753 1 + G A COAD 47838752 + 47838732 47838772 41 GGGAAGGCAGATGTATCTTTCGTTCTCTTTTTTGACTGTAA GGGAAGGCAGATGTATCTTTCATTCTCTTTTTTGACTGTAA < 41bp 1 0.120365995108156 1 0.227583110332489 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control CMPK1 ENSG00000162368 CDS Human protein_coding chr1:47838752 chr1:47838753 nonsynonymous SNV 0.989 1 22 hm5C_associated_SNPs_21311 0 0 1 2 1 CMPK1 chr1:47838779 5'GT 47838779 Upstream 27bp
chr5 72192904 72192904 1 + T G COAD 72192921 + 72192901 72192941 41 ATATTCCTATGGTGTTGCACCAGCTTGTAGAAATCATTAAC ATAGTCCTATGGTGTTGCACCAGCTTGTAGAAATCATTAAC < 41bp 1 0.356331978146424 1 0.0981483161449432 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72192921 chr5:72192904 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_21312 0 0 1 0 2 TNPO1 chr5:72192883 3'AG 72192883 Downstream 22bp
chr5 72192904 72192904 1 + T G COAD 72192921 + 72192901 72192941 41 ATATTCCTATGGTGTTGCACCAGCTTGTAGAAATCATTAAC ATAGTCCTATGGTGTTGCACCAGCTTGTAGAAATCATTAAC < 41bp 1 0.356331978146424 1 0.0981483161449432 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72192921 chr5:72192904 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_21312 0 0 1 0 2 TNPO1 chr5:72192978 5'GT 72192978 Upstream 75bp
chr12 44166753 44166753 1 + A G COAD 44166754 + 44166734 44166774 41 TTATGAATTGAAGAATGTCACAAATAACTTTGATGAACGAC TTATGAATTGAAGAATGTCGCAAATAACTTTGATGAACGAC < 41bp 1 0.198814942705288 1 0.571263611316681 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IRAK4 ENSG00000198001 CDS Human protein_coding chr12:44166754 chr12:44166753 nonsynonymous SNV 0.945 4 20 hm5C_associated_SNPs_21313 0 0 0 0 1 IRAK4 chr12:44166715 3'AG 44166715 Downstream 39bp
chr3 25542760 25542760 1 + C T COAD 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACCAGGAATTGATGCCAATACTGTCGACTCCAGAAGTGCTT < 41bp 1 0.258392889448804 1 0.0941940248012543 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542760 stopgain 1.000 1 10 hm5C_associated_SNPs_21314 0 0 1 0 2 RARB chr3:25542673 3'AG 25542673 Downstream 88bp
chr3 25542760 25542760 1 + C T COAD 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACCAGGAATTGATGCCAATACTGTCGACTCCAGAAGTGCTT < 41bp 1 0.258392889448804 1 0.0941940248012543 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542760 stopgain 1.000 1 10 hm5C_associated_SNPs_21314 0 0 1 0 2 RARB chr3:25542814 5'GT 25542814 Upstream 55bp
chr19 1440375 1440375 1 + G A COAD 1440359 + 1440339 1440379 41 CTCCCGCAGCCCGAGATGATCGGCCACTACCTGGGCGAGTT CTCCCGCAGCCCGAGATGATCGGCCACTACCTGGGCAAGTT < 41bp 1 0.619343727402533 1 0.65852963924408 experiment 0.761312545194935 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPS15 ENSG00000115268 CDS Human protein_coding chr19:1440359 chr19:1440375 nonsynonymous SNV 0.999 1 37 hm5C_associated_SNPs_21316 0 0 1 0 1 RPS15 chr19:1440348 3'AG 1440348 Downstream 28bp
chr2 174224139 174224139 1 + G A COAD 174224138 + 174224118 174224158 41 CCAAGGCCAGATGTCACTAACGAACTGGCCGGTATTTTTCA CCAAGGCCAGATGTCACTAACAAACTGGCCGGTATTTTTCA < 41bp 1 0.290104720876645 1 0.331636011600494 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CDCA7 ENSG00000144354 CDS Human protein_coding chr2:174224138 chr2:174224139 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_21317 0 0 1 0 2 CDCA7 chr2:174224115 3'AG 174224115 Downstream 25bp
chr2 174224139 174224139 1 + G A COAD 174224138 + 174224118 174224158 41 CCAAGGCCAGATGTCACTAACGAACTGGCCGGTATTTTTCA CCAAGGCCAGATGTCACTAACAAACTGGCCGGTATTTTTCA < 41bp 1 0.290104720876645 1 0.331636011600494 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CDCA7 ENSG00000144354 CDS Human protein_coding chr2:174224138 chr2:174224139 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_21317 0 0 1 0 2 CDCA7 chr2:174224219 5'GT 174224219 Upstream 81bp
chr6 90331663 90331663 1 + G A COAD 90331647 + 90331627 90331667 41 TTTGCCTCCTTCAGGTCTTGCGCTTCAGTCGTGGGCGAAGC TTTGCCTCCTTCAGGTCTTGCGCTTCAGTCGTGGGCAAAGC < 41bp 1 0.139754476697938 1 0.110112637281418 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKRD6 ENSG00000083099;ENSG00000135299 CDS Human other chr6:90331647 chr6:90331663 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_21321 0 0 0 0 2 ANKRD6 chr6:90331641 3'AG 90331641 Downstream 23bp
chr6 90331663 90331663 1 + G A COAD 90331647 + 90331627 90331667 41 TTTGCCTCCTTCAGGTCTTGCGCTTCAGTCGTGGGCGAAGC TTTGCCTCCTTCAGGTCTTGCGCTTCAGTCGTGGGCAAAGC < 41bp 1 0.139754476697938 1 0.110112637281418 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKRD6 ENSG00000083099;ENSG00000135299 CDS Human protein_coding chr6:90331647 chr6:90331663 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_21321 0 0 0 0 2 ANKRD6 chr6:90331745 5'GT 90331745 Upstream 83bp
chr19 50880880 50880880 1 + G A COAD 50880899 + 50880879 50880919 41 CGAGTTCCCTGGATACCCCCCTGCCTGGTGAGTGACTCTCT CAAGTTCCCTGGATACCCCCCTGCCTGGTGAGTGACTCTCT < 41bp 1 0.169732604720986 1 0.564473986625671 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50880899 chr19:50880880 synonymous SNV . 0 2 hm5C_associated_SNPs_21322 0 0 1 0 2 NR1H2 chr19:50880844 3'AG 50880844 Downstream 37bp
chr19 50880880 50880880 1 + G A COAD 50880899 + 50880879 50880919 41 CGAGTTCCCTGGATACCCCCCTGCCTGGTGAGTGACTCTCT CAAGTTCCCTGGATACCCCCCTGCCTGGTGAGTGACTCTCT < 41bp 1 0.169732604720986 1 0.564473986625671 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50880899 chr19:50880880 synonymous SNV . 0 2 hm5C_associated_SNPs_21322 0 0 1 0 2 NR1H2 chr19:50880905 5'GT 50880905 Upstream 26bp
chr1 223943197 223943197 1 + A G COAD 223943200 + 223943180 223943220 41 AGACACATTCTGGATGAACCCTCAGTACCTGATCAAGCTGG AGACACATTCTGGATGAGCCCTCAGTACCTGATCAAGCTGG < 41bp 1 0.567696243996293 1 0.356120467185974 experiment 0.864607512007414 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943200 chr1:223943197 nonsynonymous SNV 1.000 5 18 hm5C_associated_SNPs_21323 0 0 0 0 1 CAPN2 chr1:223943182 3'AG 223943182 Downstream 16bp
chr1 223943197 223943197 1 + A G COAD 223943207 + 223943187 223943227 41 TTCTGGATGAACCCTCAGTACCTGATCAAGCTGGAGGAGGA TTCTGGATGAGCCCTCAGTACCTGATCAAGCTGGAGGAGGA < 41bp 1 0.431492126026889 1 0.0527171492576599 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943207 chr1:223943197 nonsynonymous SNV 1.000 5 11 hm5C_associated_SNPs_21324 0 0 0 0 1 CAPN2 chr1:223943182 3'AG 223943182 Downstream 16bp
chr15 64448279 64448279 1 - G T COAD 64448264 - 64448244 64448284 41 GTGATCATCGCAGACTGCGGCAAGATCGAGGTGGAGAAGCC GTGATAATCGCAGACTGCGGCAAGATCGAGGTGGAGAAGCC < 41bp 1 0.74437436451372 1 0.597470045089722 experiment 0.51125127097256 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PPIB ENSG00000166794 CDS Human protein_coding chr15:64448264 chr15:64448279 synonymous SNV . 0 6 hm5C_associated_SNPs_21325 0 0 1 0 1 PPIB chr15:64448344 3'AG 64448344 Downstream 66bp
chr15 64448279 64448279 1 - G T COAD 64448270 - 64448250 64448290 41 AAGGATGTGATCATCGCAGACTGCGGCAAGATCGAGGTGGA AAGGATGTGATAATCGCAGACTGCGGCAAGATCGAGGTGGA < 41bp 1 0.683510562815277 1 0.49492484331131 experiment 0.632978874369446 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPIB ENSG00000166794 CDS Human protein_coding chr15:64448270 chr15:64448279 synonymous SNV . 0 12 hm5C_associated_SNPs_21326 0 0 1 0 1 PPIB chr15:64448344 3'AG 64448344 Downstream 66bp
chr15 64448279 64448279 1 - G T COAD 64448276 - 64448256 64448296 41 CCCCTGAAGGATGTGATCATCGCAGACTGCGGCAAGATCGA CCCCTGAAGGATGTGATAATCGCAGACTGCGGCAAGATCGA < 41bp 1 0.796977090846774 1 0.571016132831573 experiment 0.406045818306452 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PPIB ENSG00000166794 CDS Human protein_coding chr15:64448276 chr15:64448279 synonymous SNV . 0 18 hm5C_associated_SNPs_21327 0 0 1 0 1 PPIB chr15:64448344 3'AG 64448344 Downstream 66bp
chr15 64448279 64448279 1 - G T COAD 64448294 - 64448274 64448314 41 ACAGACAGCCGGGATAAACCCCTGAAGGATGTGATCATCGC ACAGACAGCCGGGATAAACCCCTGAAGGATGTGATAATCGC < 41bp 1 0.576292870098663 1 0.144448757171631 experiment 0.847414259802674 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PPIB ENSG00000166794 CDS Human protein_coding chr15:64448294 chr15:64448279 synonymous SNV . 0 36 hm5C_associated_SNPs_21328 0 0 1 0 1 PPIB chr15:64448344 3'AG 64448344 Downstream 66bp
chr1 110210762 110210762 1 + A G COAD 110210743 + 110210723 110210763 41 ACAGCAACCAGCACCATGCCCATGACACTGGGGTACTGGAA ACAGCAACCAGCACCATGCCCATGACACTGGGGTACTGGGA < 41bp 1 0.629465081300299 1 0.130838602781296 experiment 0.741069837399402 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GSTM2 ENSG00000213366 CDS Human protein_coding chr1:110210743 chr1:110210762 nonsynonymous SNV 0.044 0 40 hm5C_associated_SNPs_21329 0 0 1 0 1 GSTM2 chr1:110210773 5'GT 110210773 Upstream 12bp
chr7 44741173 44741173 1 + G A COAD 44741191 + 44741171 44741211 41 GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC GCACCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC < 41bp 1 0.198264067020326 1 0.533280730247498 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44741191 chr7:44741173 nonsynonymous SNV 0.998 5 3 hm5C_associated_SNPs_21330 0 0 1 0 2 OGDH chr7:44741142 3'AG 44741142 Downstream 32bp
chr7 44741173 44741173 1 + G A COAD 44741191 + 44741171 44741211 41 GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC GCACCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC < 41bp 1 0.198264067020326 1 0.533280730247498 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44741191 chr7:44741173 nonsynonymous SNV 0.998 5 3 hm5C_associated_SNPs_21330 0 0 1 0 2 OGDH chr7:44741214 5'GT 44741214 Upstream 42bp
chr10 5494322 5494322 1 + C A COAD 5494328 + 5494308 5494348 41 TTTCTTTTTTAAGTCATTTACCCTTCGTGGTGACCACAGAT TTTCTTTTTTAAGTAATTTACCCTTCGTGGTGACCACAGAT < 41bp 1 0.0731852432105732 1 0.0642848014831543 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NET1 ENSG00000173848 CDS Human protein_coding chr10:5494328 chr10:5494322 stopgain 0.998 0 15 hm5C_associated_SNPs_21331 0 0 1 0 1 NET1 chr10:5494321 3'AG 5494321 Downstream 2bp
chr6 29911295 29911295 1 + C T COAD 29911277 + 29911257 29911297 41 GGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGG GGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAATGG < 41bp 1 0.545551802394517 1 0.125044256448746 experiment 0.908896395210966 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911277 chr6:29911295 synonymous SNV . 0 39 hm5C_associated_SNPs_21332 0 0 1 0 1 HLA-A chr6:29911320 5'GT 29911320 Upstream 26bp
chr6 29911295 29911295 1 + C T COAD 29911278 + 29911258 29911298 41 GCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGG GCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAATGGG < 41bp 1 0.403768716019174 1 0.404350399971008 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911278 chr6:29911295 synonymous SNV . 0 38 hm5C_associated_SNPs_21333 0 0 1 0 1 HLA-A chr6:29911320 5'GT 29911320 Upstream 26bp
chr17 74944092 74944092 1 + G A COAD 74944107 + 74944087 74944127 41 GCACCGACACCTGCCTGGACCACGGGCTAATCTGTGAGCCC GCACCAACACCTGCCTGGACCACGGGCTAATCTGTGAGCCC < 41bp 1 0.75184143814139 1 0.805047392845154 experiment 0.496317123717219 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MGAT5B ENSG00000167889 CDS Human protein_coding chr17:74944107 chr17:74944092 nonsynonymous SNV 0.963 3 6 hm5C_associated_SNPs_21334 0 0 1 0 1 MGAT5B chr17:74944168 5'GT 74944168 Upstream 77bp
chr1 156761579 156761579 1 + G A COAD 156761563 + 156761543 156761583 41 CAGGAAATTGCCCCAGATGCCTCCTTCATCGATGACGAAGC CAGGAAATTGCCCCAGATGCCTCCTTCATCGATGACAAAGC < 41bp 1 0.461211641393345 1 0.400873988866806 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156761563 chr1:156761579 nonsynonymous SNV 0.999 3 37 hm5C_associated_SNPs_21335 0 0 0 0 2 PRCC chr1:156761489 3'AG 156761489 Downstream 91bp
chr1 156761579 156761579 1 + G A COAD 156761563 + 156761543 156761583 41 CAGGAAATTGCCCCAGATGCCTCCTTCATCGATGACGAAGC CAGGAAATTGCCCCAGATGCCTCCTTCATCGATGACAAAGC < 41bp 1 0.461211641393345 1 0.400873988866806 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156761563 chr1:156761579 nonsynonymous SNV 0.999 3 37 hm5C_associated_SNPs_21335 0 0 0 0 2 PRCC chr1:156761584 5'GT 156761584 Upstream 6bp
chr2 233708895 233708895 1 + C T COAD 233708896 + 233708876 233708916 41 GAGATCCAGCAGGAAGAGGCCAGGCAAATGCAAAAGCAGCA GAGATCCAGCAGGAAGAGGTCAGGCAAATGCAAAAGCAGCA < 41bp 1 0.298930393227144 1 0.730758666992188 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233708896 chr2:233708895 nonsynonymous SNV 0.998 1 20 hm5C_associated_SNPs_21337 0 0 1 0 1 GIGYF2 chr2:233708965 5'GT 233708965 Upstream 71bp
chr9 37501727 37501727 1 + C T COAD 37501742 + 37501722 37501762 41 AATTTCGGATTCTATGAAGGCGAAGATTACTGCATATGTGA AATTTTGGATTCTATGAAGGCGAAGATTACTGCATATGTGA < 41bp 1 0.342011760581501 1 0.340872526168823 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1E ENSG00000137054 CDS Human protein_coding chr9:37501742 chr9:37501727 nonsynonymous SNV 0.989 4 6 hm5C_associated_SNPs_21340 0 0 1 0 1 POLR1E chr9:37501710 3'AG 37501710 Downstream 18bp
chr19 45974495 45974495 1 + G A COAD 45974494 + 45974474 45974514 41 AGCGAAGGGTGCGCCGGGAACGAAATAAACTAGCAGCAGCT AGCGAAGGGTGCGCCGGGAACAAAATAAACTAGCAGCAGCT < 41bp 1 0.688624432810725 1 0.506480932235718 experiment 0.622751134378549 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45974494 chr19:45974495 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_21342 0 0 0 0 2 FOSB chr19:45974452 3'AG 45974452 Downstream 44bp
chr19 45974495 45974495 1 + G A COAD 45974494 + 45974474 45974514 41 AGCGAAGGGTGCGCCGGGAACGAAATAAACTAGCAGCAGCT AGCGAAGGGTGCGCCGGGAACAAAATAAACTAGCAGCAGCT < 41bp 1 0.688624432810725 1 0.506480932235718 experiment 0.622751134378549 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45974494 chr19:45974495 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_21342 0 0 0 0 2 FOSB chr19:45974559 5'GT 45974559 Upstream 65bp
chr11 82878524 82878524 1 + G A COAD 82878517 + 82878497 82878537 41 ACTTCCTTGTTGTTGTGCATCAAATTCGACAGCTATTTCAG ACTTCCTTGTTGTTGTGCATCAAATTCAACAGCTATTTCAG < 41bp 1 0.299872053813285 1 0.447575628757477 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCF11 ENSG00000165494 CDS Human protein_coding chr11:82878517 chr11:82878524 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_21343 0 0 1 0 2 PCF11 chr11:82878457 3'AG 82878457 Downstream 68bp
chr11 82878524 82878524 1 + G A COAD 82878517 + 82878497 82878537 41 ACTTCCTTGTTGTTGTGCATCAAATTCGACAGCTATTTCAG ACTTCCTTGTTGTTGTGCATCAAATTCAACAGCTATTTCAG < 41bp 1 0.299872053813285 1 0.447575628757477 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCF11 ENSG00000165494 CDS Human protein_coding chr11:82878517 chr11:82878524 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_21343 0 0 1 0 2 PCF11 chr11:82878547 5'GT 82878547 Upstream 24bp
chr21 30701851 30701851 1 + G A COAD 30701844 + 30701824 30701864 41 ATGCACAACGGATAATTTCACTGTCTCGAAATGATTTTCAG ATGCACAACGGATAATTTCACTGTCTCAAAATGATTTTCAG < 41bp 1 0.162673858083715 1 0.218050301074982 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BACH1 ENSG00000156273 CDS Human protein_coding chr21:30701844 chr21:30701851 nonsynonymous SNV 0.999 5 28 hm5C_associated_SNPs_21344 0 0 1 0 1 BACH1 chr21:30701808 3'AG 30701808 Downstream 44bp
chr15 99673043 99673043 1 + C T COAD 99673023 + 99673003 99673043 41 GGAGCTCTCGGTGTGTCTGACCGTGGTTCCTGGAGAGACGC GGAGCTCTCGGTGTGTCTGACCGTGGTTCCTGGAGAGACGT < 41bp 1 0.213752628669609 1 0.086933970451355 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99673023 chr15:99673043 nonsynonymous SNV 0.000 0 41 hm5C_associated_SNPs_21345 0 0 1 0 1 SYNM chr15:99672955 3'AG 99672955 Downstream 89bp
chr1 93307405 93307405 1 + C T COAD 93307419 + 93307399 93307439 41 CAGGAGCGGGCTGCTGAGAGCTAAACCCAGCAATTTTCTAT CAGGAGTGGGCTGCTGAGAGCTAAACCCAGCAATTTTCTAT < 41bp 1 0.445526945638644 1 0.169617056846619 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL5 ENSG00000122406 CDS Human protein_coding chr1:93307419 chr1:93307405 nonsynonymous SNV 0.998 1 7 hm5C_associated_SNPs_21346 0 0 1 0 1 RPL5 chr1:93307323 3'AG 93307323 Downstream 83bp
chr4 110442694 110442694 1 + G A COAD 110442700 + 110442680 110442720 41 TCCAACAGGTGGCCGTGTGTCTGTATTTCAGACACAGTTAC TCCAACAGGTGGCCATGTGTCTGTATTTCAGACACAGTTAC < 41bp 1 0.786074323582439 1 0.582481980323792 experiment 0.427851352835121 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SEC24B ENSG00000138802 CDS Human protein_coding chr4:110442700 chr4:110442694 nonsynonymous SNV 0.999 4 15 hm5C_associated_SNPs_21349 0 0 1 0 1 SEC24B chr4:110442782 5'GT 110442782 Upstream 89bp
chr7 23207602 23207602 1 + A G COAD 23207600 + 23207580 23207620 41 TGTGGTGGAAGTTTAGGAAACAATGTTTCTGGGAGAGTGCT TGTGGTGGAAGTTTAGGAAACAGTGTTTCTGGGAGAGTGCT < 41bp 1 0.46185139328493 1 0.141606569290161 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLHL7 ENSG00000122550 CDS Human protein_coding chr7:23207600 chr7:23207602 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_21352 0 0 1 0 1 KLHL7 chr7:23207656 5'GT 23207656 Upstream 55bp
chr10 71243599 71243599 1 + G A COAD 71243594 + 71243574 71243614 41 TGGTCTCCTTCATTGGTGTGCTGGCGTCCCTCCGTGACAAC TGGTCTCCTTCATTGGTGTGCTGGCATCCCTCCGTGACAAC < 41bp 1 0.417669902431523 1 0.121469736099243 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243594 chr10:71243599 synonymous SNV . 0 26 hm5C_associated_SNPs_21353 0 0 1 0 1 TSPAN15 chr10:71243632 5'GT 71243632 Upstream 34bp
chr10 71243599 71243599 1 + G A COAD 71243598 + 71243578 71243618 41 CTCCTTCATTGGTGTGCTGGCGTCCCTCCGTGACAACCTGT CTCCTTCATTGGTGTGCTGGCATCCCTCCGTGACAACCTGT < 41bp 1 0.0913654558452393 1 0.0988269150257111 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243598 chr10:71243599 synonymous SNV . 0 22 hm5C_associated_SNPs_21354 0 0 1 0 1 TSPAN15 chr10:71243632 5'GT 71243632 Upstream 34bp
chr10 71243599 71243599 1 + G A COAD 71243601 + 71243581 71243621 41 CTTCATTGGTGTGCTGGCGTCCCTCCGTGACAACCTGTACC CTTCATTGGTGTGCTGGCATCCCTCCGTGACAACCTGTACC < 41bp 1 0.0765823898413094 1 0.362498641014099 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243601 chr10:71243599 synonymous SNV . 0 19 hm5C_associated_SNPs_21355 0 0 1 0 1 TSPAN15 chr10:71243632 5'GT 71243632 Upstream 34bp
chr10 71243599 71243599 1 + G A COAD 71243606 + 71243586 71243626 41 TTGGTGTGCTGGCGTCCCTCCGTGACAACCTGTACCTTCTC TTGGTGTGCTGGCATCCCTCCGTGACAACCTGTACCTTCTC < 41bp 1 0.56807178705772 1 0.400925487279892 experiment 0.86385642588456 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243606 chr10:71243599 synonymous SNV . 0 14 hm5C_associated_SNPs_21356 0 0 1 0 1 TSPAN15 chr10:71243632 5'GT 71243632 Upstream 34bp
chr17 66033478 66033478 1 + T C COAD 66033483 + 66033463 66033503 41 CTTTTCTCAAGGAAATGAGGCGTCGCAGAATAGAGGTCAAT CTTTTCTCAAGGAAACGAGGCGTCGCAGAATAGAGGTCAAT < 41bp 1 0.134770477527321 1 0.0992160737514496 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033483 chr17:66033478 nonsynonymous SNV 0.158 1 16 hm5C_associated_SNPs_21357 0 0 1 0 1 KPNA2 chr17:66033474 3'AG 66033474 Downstream 5bp
chr17 66033478 66033478 1 + T C COAD 66033486 + 66033466 66033506 41 TTCTCAAGGAAATGAGGCGTCGCAGAATAGAGGTCAATGTG TTCTCAAGGAAACGAGGCGTCGCAGAATAGAGGTCAATGTG < 41bp 1 0.684365395600188 1 0.170803755521774 experiment 0.631269208799624 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033486 chr17:66033478 nonsynonymous SNV 0.158 1 13 hm5C_associated_SNPs_21358 0 0 1 0 1 KPNA2 chr17:66033474 3'AG 66033474 Downstream 5bp
chr17 66033478 66033478 1 + T C COAD 66033488 + 66033468 66033508 41 CTCAAGGAAATGAGGCGTCGCAGAATAGAGGTCAATGTGGA CTCAAGGAAACGAGGCGTCGCAGAATAGAGGTCAATGTGGA < 41bp 1 0.731793176242571 1 0.734330952167511 experiment 0.536413647514858 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033488 chr17:66033478 nonsynonymous SNV 0.158 1 11 hm5C_associated_SNPs_21359 0 0 1 0 1 KPNA2 chr17:66033474 3'AG 66033474 Downstream 5bp
chr22 32270370 32270370 1 + G A COAD 32270365 + 32270345 32270385 41 ACGTGGAGGGGATCCAGACACAGGCGATGGCCATTGACATC ACGTGGAGGGGATCCAGACACAGGCAATGGCCATTGACATC < 41bp 1 0.740844423708545 1 0.645016312599182 experiment 0.51831115258291 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32270365 chr22:32270370 synonymous SNV . 0 26 hm5C_associated_SNPs_21361 0 0 1 0 1 DEPDC5 chr22:32270391 5'GT 32270391 Upstream 22bp
chr22 24468432 24468432 1 + G A COAD 24468439 + 24468419 24468459 41 CTCTGTGCCACCAGCAGCAGCTCCAAAACCCAGCGGAGGAA CTCTGTGCCACCAACAGCAGCTCCAAAACCCAGCGGAGGAA < 41bp 1 0.351034660799569 1 0.77521687746048 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24468439 chr22:24468432 synonymous SNV . 0 14 hm5C_associated_SNPs_21362 0 0 1 0 1 CABIN1 chr22:24468460 5'GT 24468460 Upstream 29bp
chr16 700039 700039 1 + G A COAD 700031 + 700011 700051 41 CGTGTATCGCATTCGGGGCTCAGTCTCTGCCGCCAACTACA CGTGTATCGCATTCGGGGCTCAGTCTCTACCGCCAACTACA < 41bp 1 0.0979442396742572 1 0.0280691683292389 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:700031 chr16:700039 nonsynonymous SNV 0.004 3 29 hm5C_associated_SNPs_21363 0 0 1 0 1 WDR90 chr16:699991 3'AG 699991 Downstream 49bp
chr15 45353307 45353307 1 + A G COAD 45353327 + 45353307 45353347 41 ATGAATTCTGCAAGATGGGCCGATACAATCTGTCACCTTCC GTGAATTCTGCAAGATGGGCCGATACAATCTGTCACCTTCC < 41bp 1 0.236225221426707 1 0.355215072631836 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SORD ENSG00000140263 CDS Human protein_coding chr15:45353327 chr15:45353307 nonsynonymous SNV 0.415 1 1 hm5C_associated_SNPs_21364 0 0 1 0 1 SORD chr15:45353265 3'AG 45353265 Downstream 43bp
chr6 7880269 7880269 1 + G A COAD 7880280 + 7880260 7880300 41 TACTGTGATGGAGAATGCTCCTTCCCACTCAACGCACACAT TACTGTGATAGAGAATGCTCCTTCCCACTCAACGCACACAT < 41bp 1 0.089883274785155 1 0.0498296022415161 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BMP6 ENSG00000153162 CDS Human protein_coding chr6:7880280 chr6:7880269 nonsynonymous SNV 0.998 5 10 hm5C_associated_SNPs_21365 0 0 1 0 2 BMP6 chr6:7880224 3'AG 7880224 Downstream 46bp
chr6 7880269 7880269 1 + G A COAD 7880280 + 7880260 7880300 41 TACTGTGATGGAGAATGCTCCTTCCCACTCAACGCACACAT TACTGTGATAGAGAATGCTCCTTCCCACTCAACGCACACAT < 41bp 1 0.089883274785155 1 0.0498296022415161 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BMP6 ENSG00000153162 CDS Human protein_coding chr6:7880280 chr6:7880269 nonsynonymous SNV 0.998 5 10 hm5C_associated_SNPs_21365 0 0 1 0 2 BMP6 chr6:7880334 5'GT 7880334 Upstream 66bp
chr22 51133222 51133222 1 + C A COAD 51133206 + 51133186 51133226 41 ATGCCCCCTTACCCCAGTACCATTCAGGGAAACCCCCAGCT ATGCCCCCTTACCCCAGTACCATTCAGGGAAACCCCAAGCT < 41bp 1 0.0234805462897815 1 0.0365417003631592 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51133206 chr22:51133222 synonymous SNV . 0 37 hm5C_associated_SNPs_21366 0 0 0 0 1 SHANK3 chr22:51133203 3'AG 51133203 Downstream 20bp
chr12 79689918 79689918 1 + G A COAD 79689904 + 79689884 79689924 41 CGCCTTGGACATGGGGGGCACATCTGATCCTTACGTGAAAG CGCCTTGGACATGGGGGGCACATCTGATCCTTACATGAAAG < 41bp 1 0.166462930461549 1 0.204011410474777 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYT1 ENSG00000067715 CDS Human protein_coding chr12:79689904 chr12:79689918 nonsynonymous SNV 0.994 4 35 hm5C_associated_SNPs_21367 0 0 0 0 2 SYT1 chr12:79689849 3'AG 79689849 Downstream 70bp
chr12 79689918 79689918 1 + G A COAD 79689904 + 79689884 79689924 41 CGCCTTGGACATGGGGGGCACATCTGATCCTTACGTGAAAG CGCCTTGGACATGGGGGGCACATCTGATCCTTACATGAAAG < 41bp 1 0.166462930461549 1 0.204011410474777 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYT1 ENSG00000067715 CDS Human protein_coding chr12:79689904 chr12:79689918 nonsynonymous SNV 0.994 4 35 hm5C_associated_SNPs_21367 0 0 0 0 2 SYT1 chr12:79690016 5'GT 79690016 Upstream 99bp
chr19 12014761 12014761 1 + A C COAD 12014742 + 12014722 12014762 41 AAAAGTTGGAAAGACCAGAACATTGAATATGAGTACCAAAA AAAAGTTGGAAAGACCAGAACATTGAATATGAGTACCAACA < 41bp 1 0.0897841015084729 1 0.172506839036942 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF69 ENSG00000198429 CDS Human protein_coding chr19:12014742 chr19:12014761 nonsynonymous SNV 0.002 0 40 hm5C_associated_SNPs_21369 0 0 0 0 2 ZNF69 chr19:12014720 3'AG 12014720 Downstream 42bp
chr19 12014761 12014761 1 + A C COAD 12014742 + 12014722 12014762 41 AAAAGTTGGAAAGACCAGAACATTGAATATGAGTACCAAAA AAAAGTTGGAAAGACCAGAACATTGAATATGAGTACCAACA < 41bp 1 0.0897841015084729 1 0.172506839036942 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF69 ENSG00000198429 CDS Human protein_coding chr19:12014742 chr19:12014761 nonsynonymous SNV 0.002 0 40 hm5C_associated_SNPs_21369 0 0 0 0 2 ZNF69 chr19:12014780 5'GT 12014780 Upstream 20bp
chr1 164790828 164790828 1 + G A COAD 164790815 + 164790795 164790835 41 ATCAGCCAGACAGGAGGATACAGTGATGGACTCGCAGCCAG ATCAGCCAGACAGGAGGATACAGTGATGGACTCACAGCCAG < 41bp 1 0.670259164635937 1 0.204720765352249 experiment 0.659481670728125 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164790815 chr1:164790828 nonsynonymous SNV 1.000 0 34 hm5C_associated_SNPs_21370 0 0 1 0 1 PBX1 chr1:164790774 3'AG 164790774 Downstream 55bp
chr4 128748511 128748511 1 + A C COAD 128748508 + 128748488 128748528 41 ACATGGAGCATGAAGAGAGACCAAAAGCCTTAAATGACTTG ACATGGAGCATGAAGAGAGACCACAAGCCTTAAATGACTTG < 41bp 1 0.379256072446809 1 0.136954247951508 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4L ENSG00000164070 CDS Human protein_coding chr4:128748508 chr4:128748511 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_21371 0 0 1 0 2 HSPA4L chr4:128748460 3'AG 128748460 Downstream 52bp
chr4 128748511 128748511 1 + A C COAD 128748508 + 128748488 128748528 41 ACATGGAGCATGAAGAGAGACCAAAAGCCTTAAATGACTTG ACATGGAGCATGAAGAGAGACCACAAGCCTTAAATGACTTG < 41bp 1 0.379256072446809 1 0.136954247951508 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4L ENSG00000164070 CDS Human protein_coding chr4:128748508 chr4:128748511 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_21371 0 0 1 0 2 HSPA4L chr4:128748579 5'GT 128748579 Upstream 69bp
chr11 70260753 70260753 1 + G T COAD 70260737 + 70260717 70260757 41 TTCGGAGGCAAGTTTGGTGTCCAGATGGACAGAGTTGATCA TTCGGAGGCAAGTTTGGTGTCCAGATGGACAGAGTTTATCA < 41bp 1 0.693447750202371 1 0.306219875812531 experiment 0.613104499595259 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70260737 chr11:70260753 nonsynonymous SNV 0.996 4 37 hm5C_associated_SNPs_21372 0 0 1 0 1 CTTN chr11:70260758 5'GT 70260758 Upstream 6bp
chr13 77570183 77570183 1 + C T COAD 77570189 + 77570169 77570209 41 TGGTGTAATCAAGGCGCTGCCTGCTTTTTTGAGGGAATTGA TGGTGTAATCAAGGTGCTGCCTGCTTTTTTGAGGGAATTGA < 41bp 1 0.651604195493075 1 0.152753949165344 experiment 0.696791609013849 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLN5 ENSG00000102805 CDS Human protein_coding chr13:77570189 chr13:77570183 synonymous SNV . 0 15 hm5C_associated_SNPs_21373 0 0 1 0 1 CLN5 chr13:77570262 5'GT 77570262 Upstream 80bp
chr2 159477782 159477782 1 + C T COAD 159477801 + 159477781 159477821 41 TCTTATTCCGACAGTGGATACCAGGAAGCAGGGAGTTTCCA TTTTATTCCGACAGTGGATACCAGGAAGCAGGGAGTTTCCA < 41bp 1 0.233070440879627 1 0.0879938006401062 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKP4 ENSG00000144283 CDS Human protein_coding chr2:159477801 chr2:159477782 nonsynonymous SNV 0.998 4 2 hm5C_associated_SNPs_21375 0 0 1 0 1 PKP4 chr2:159477743 3'AG 159477743 Downstream 40bp
chr22 29439408 29439408 1 + G A COAD 29439389 + 29439369 29439409 41 TCAACAAGCAGAAAGTGGCTCGAGCAAGGATCCAGCACCGC TCAACAAGCAGAAAGTGGCTCGAGCAAGGATCCAGCACCAC < 41bp 1 0.334407915862384 1 0.387622058391571 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29439389 chr22:29439408 nonsynonymous SNV 0.999 3 40 hm5C_associated_SNPs_21376 0 0 1 0 1 ZNRF3 chr22:29439418 5'GT 29439418 Upstream 11bp
chr1 117641458 117641458 1 + T G COAD 117641459 + 117641439 117641479 41 AGCTGTCTTCTAACAGGAATCCATCACTTGAAGATCAAGCT AGCTGTCTTCTAACAGGAAGCCATCACTTGAAGATCAAGCT < 41bp 1 0.0186149500051744 1 0.289916455745697 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117641459 chr1:117641458 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_21377 0 0 1 0 2 TTF2 chr1:117641455 3'AG 117641455 Downstream 4bp
chr1 117641458 117641458 1 + T G COAD 117641459 + 117641439 117641479 41 AGCTGTCTTCTAACAGGAATCCATCACTTGAAGATCAAGCT AGCTGTCTTCTAACAGGAAGCCATCACTTGAAGATCAAGCT < 41bp 1 0.0186149500051744 1 0.289916455745697 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117641459 chr1:117641458 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_21377 0 0 1 0 2 TTF2 chr1:117641529 5'GT 117641529 Upstream 72bp
chr3 155628663 155628663 1 + T C COAD 155628644 + 155628624 155628664 41 CTTGAGTGTATTCGAGAGATCAAAGAGAGAGTAGGCACGTC CTTGAGTGTATTCGAGAGATCAAAGAGAGAGTAGGCACGCC < 41bp 1 0.503719480381879 1 0.409269988536835 experiment 0.992561039236243 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GMPS ENSG00000163655 CDS Human protein_coding chr3:155628644 chr3:155628663 nonsynonymous SNV 0.999 2 40 hm5C_associated_SNPs_21378 0 0 1 0 1 GMPS chr3:155628674 5'GT 155628674 Upstream 12bp
chr6 42986629 42986629 1 + G A COAD 42986648 + 42986628 42986668 41 CGAAGGGGAAGGGGCCATGTCCCCGCCGGCGCCAGTGCTGC CAAAGGGGAAGGGGCCATGTCCCCGCCGGCGCCAGTGCTGC < 41bp 1 0.457488561118072 1 0.621697247028351 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLHDC3 ENSG00000124702 CDS Human protein_coding chr6:42986648 chr6:42986629 synonymous SNV . 0 2 hm5C_associated_SNPs_21379 0 0 1 0 1 KLHDC3 chr6:42986709 5'GT 42986709 Upstream 81bp
chr1 33138398 33138398 1 + C A COAD 33138407 + 33138387 33138427 41 TTCAGTTTATTCATGGTGGTCATACTGCCAAGATATCTGAT TTCAGTTTATTAATGGTGGTCATACTGCCAAGATATCTGAT < 41bp 1 0.0516718574101557 1 0.14948832988739 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBBP4 ENSG00000162521 CDS Human protein_coding chr1:33138407 chr1:33138398 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_21380 0 0 1 0 1 RBBP4 chr1:33138392 3'AG 33138392 Downstream 7bp
chr8 143782022 143782022 1 + G A COAD 143782018 + 143781998 143782038 41 ACGCCAACCTGACTGCGAGACAACGAGATCCAGAGGACTCC ACGCCAACCTGACTGCGAGACAACAAGATCCAGAGGACTCC < 41bp 1 0.757555294653415 1 0.0523216724395752 experiment 0.484889410693169 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LY6K ENSG00000160886 CDS Human protein_coding chr8:143782018 chr8:143782022 nonsynonymous SNV 0.150 0 25 hm5C_associated_SNPs_21382 0 0 1 0 1 LY6K chr8:143782048 5'GT 143782048 Upstream 27bp
chr9 88571307 88571307 1 + C T COAD 88571292 + 88571272 88571312 41 TAGAATTAAAGTTGGGAGAACTACTTCATGATAAGCTGTAA TAGAATTAAAGTTGGGAGAACTACTTCATGATAAGTTGTAA < 41bp 1 0.0712114269660352 1 0.304441571235657 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAA35 ENSG00000135040 CDS Human protein_coding chr9:88571292 chr9:88571307 synonymous SNV . 0 36 hm5C_associated_SNPs_21383 0 0 1 0 2 NAA35 chr9:88571275 3'AG 88571275 Downstream 33bp
chr9 88571307 88571307 1 + C T COAD 88571292 + 88571272 88571312 41 TAGAATTAAAGTTGGGAGAACTACTTCATGATAAGCTGTAA TAGAATTAAAGTTGGGAGAACTACTTCATGATAAGTTGTAA < 41bp 1 0.0712114269660352 1 0.304441571235657 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAA35 ENSG00000135040 CDS Human protein_coding chr9:88571292 chr9:88571307 synonymous SNV . 0 36 hm5C_associated_SNPs_21383 0 0 1 0 2 NAA35 chr9:88571308 5'GT 88571308 Upstream 2bp
chr1 24022315 24022315 1 + G A COAD 24022327 + 24022307 24022347 41 TCAGCATCGCAGACAAGAAGCGCAGGACAGGCTGCATTGGG TCAGCATCACAGACAAGAAGCGCAGGACAGGCTGCATTGGG < 41bp 1 0.718261366884751 1 0.393714636564255 experiment 0.563477266230497 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022327 chr1:24022315 nonsynonymous SNV 0.999 1 9 hm5C_associated_SNPs_21384 0 0 1 0 2 RPL11 chr1:24022288 3'AG 24022288 Downstream 28bp
chr1 24022315 24022315 1 + G A COAD 24022327 + 24022307 24022347 41 TCAGCATCGCAGACAAGAAGCGCAGGACAGGCTGCATTGGG TCAGCATCACAGACAAGAAGCGCAGGACAGGCTGCATTGGG < 41bp 1 0.718261366884751 1 0.393714636564255 experiment 0.563477266230497 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022327 chr1:24022315 nonsynonymous SNV 0.999 1 9 hm5C_associated_SNPs_21384 0 0 1 0 2 RPL11 chr1:24022398 5'GT 24022398 Upstream 84bp
chr12 57167928 57167928 1 + A G COAD 57167934 + 57167914 57167954 41 CTACTCAGTGGGTGAAGGAGCATGTGGGGGACAGAGGTATG CTACTCAGTGGGTGGAGGAGCATGTGGGGGACAGAGGTATG < 41bp 1 0.501064625438892 1 0.358309298753738 experiment 0.997870749122216 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSD17B6 ENSG00000025423 CDS Human protein_coding chr12:57167934 chr12:57167928 nonsynonymous SNV 0.989 1 15 hm5C_associated_SNPs_21385 0 0 1 0 1 HSD17B6 chr12:57167949 5'GT 57167949 Upstream 22bp
chr10 128817067 128817067 1 + G A COAD 128817082 + 128817062 128817102 41 GGCTCGAAAAACAGGGTTTCCGGAGATAATCATGCCTGGTA GGCTCAAAAAACAGGGTTTCCGGAGATAATCATGCCTGGTA < 41bp 1 0.493770442002837 1 0.88224995136261 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:128817082 chr10:128817067 nonsynonymous SNV 0.697 4 6 hm5C_associated_SNPs_21386 0 0 1 0 2 DOCK1 chr10:128816974 3'AG 128816974 Downstream 94bp
chr10 128817067 128817067 1 + G A COAD 128817082 + 128817062 128817102 41 GGCTCGAAAAACAGGGTTTCCGGAGATAATCATGCCTGGTA GGCTCAAAAAACAGGGTTTCCGGAGATAATCATGCCTGGTA < 41bp 1 0.493770442002837 1 0.88224995136261 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:128817082 chr10:128817067 nonsynonymous SNV 0.697 4 6 hm5C_associated_SNPs_21386 0 0 1 0 2 DOCK1 chr10:128817099 5'GT 128817099 Upstream 33bp
chr7 4796811 4796811 1 + T C COAD 4796801 + 4796781 4796821 41 TCCTGCTTCCGCACCCCCTTCGGGCCTCTGTCCTCAAGGTA TCCTGCTTCCGCACCCCCTTCGGGCCTCTGCCCTCAAGGTA < 41bp 1 0.409005192162172 1 0.830329060554504 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4796801 chr7:4796811 nonsynonymous SNV 0.988 5 31 hm5C_associated_SNPs_21387 0 0 1 0 1 FOXK1 chr7:4796818 5'GT 4796818 Upstream 8bp
chr11 45882547 45882547 1 + G A COAD 45882565 + 45882545 45882585 41 ACGACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGT ACAACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGT < 41bp 1 0.0256035043286811 1 0.0481784641742706 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45882565 chr11:45882547 nonsynonymous SNV 0.087 1 3 hm5C_associated_SNPs_21388 0 0 1 0 1 CRY2 chr11:45882583 5'GT 45882583 Upstream 37bp
chr11 45882547 45882547 1 + G A COAD 45882566 + 45882546 45882586 41 CGACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGTG CAACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGTG < 41bp 1 0.0402020467821302 1 0.0525535345077515 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45882566 chr11:45882547 nonsynonymous SNV 0.087 1 2 hm5C_associated_SNPs_21389 0 0 1 0 1 CRY2 chr11:45882583 5'GT 45882583 Upstream 37bp
chrX 107097885 107097885 1 + A G COAD 107097904 + 107097884 107097924 41 GAACTAGAAAATCAAATGGCCAAACTAATACAGATCTGCCA GGACTAGAAAATCAAATGGCCAAACTAATACAGATCTGCCA < 41bp 1 0.132444020523793 1 0.14060765504837 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MID2 ENSG00000080561 CDS Human protein_coding chrX:107097904 chrX:107097885 nonsynonymous SNV 0.997 3 2 hm5C_associated_SNPs_21392 0 0 0 0 2 MID2 chrX:107097839 3'AG 107097839 Downstream 47bp
chrX 107097885 107097885 1 + A G COAD 107097904 + 107097884 107097924 41 GAACTAGAAAATCAAATGGCCAAACTAATACAGATCTGCCA GGACTAGAAAATCAAATGGCCAAACTAATACAGATCTGCCA < 41bp 1 0.132444020523793 1 0.14060765504837 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MID2 ENSG00000080561 CDS Human protein_coding chrX:107097904 chrX:107097885 nonsynonymous SNV 0.997 3 2 hm5C_associated_SNPs_21392 0 0 0 0 2 MID2 chrX:107097934 5'GT 107097934 Upstream 50bp
chr10 73567731 73567731 1 + G T COAD 73567716 + 73567696 73567736 41 TTCTGGCCATCCACTACTTCCGGGCCCTTGCCAACGACTCT TTCTGGCCATCCACTACTTCCGGGCCCTTGCCAACTACTCT < 41bp 1 0.168950272078085 1 0.731848835945129 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH23 ENSG00000107736 CDS Human protein_coding chr10:73567716 chr10:73567731 nonsynonymous SNV 0.996 3 36 hm5C_associated_SNPs_21394 0 0 0 0 1 CDH23 chr10:73567764 5'GT 73567764 Upstream 34bp
chr1 153701125 153701125 1 + G T COAD 153701109 + 153701089 153701129 41 TTCCCGGCTCCTGGCTGCAGCCATGGAGTTGCAGAAGGGAA TTCCCGGCTCCTGGCTGCAGCCATGGAGTTGCAGAATGGAA < 41bp 1 0.110745655980692 1 0.273824036121368 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control INTS3 ENSG00000143624 CDS Human protein_coding chr1:153701109 chr1:153701125 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_21395 0 0 0 0 1 INTS3 chr1:153701029 3'AG 153701029 Downstream 97bp
chr16 70509330 70509330 1 + C A COAD 70509347 + 70509327 70509367 41 CTGCTCCGCACCTTCGGGGGCGGCTTTGAGCTGCACACCTG CTGATCCGCACCTTCGGGGGCGGCTTTGAGCTGCACACCTG < 41bp 1 0.409813762528256 1 0.392835170030594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FUK ENSG00000157353 CDS Human protein_coding chr16:70509347 chr16:70509330 nonsynonymous SNV 0.168 1 4 hm5C_associated_SNPs_21396 0 0 1 0 2 FUK chr16:70509253 3'AG 70509253 Downstream 78bp
chr16 70509330 70509330 1 + C A COAD 70509347 + 70509327 70509367 41 CTGCTCCGCACCTTCGGGGGCGGCTTTGAGCTGCACACCTG CTGATCCGCACCTTCGGGGGCGGCTTTGAGCTGCACACCTG < 41bp 1 0.409813762528256 1 0.392835170030594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FUK ENSG00000157353 CDS Human protein_coding chr16:70509347 chr16:70509330 nonsynonymous SNV 0.168 1 4 hm5C_associated_SNPs_21396 0 0 1 0 2 FUK chr16:70509396 5'GT 70509396 Upstream 67bp
chr10 124813266 124813266 1 + C T COAD 124813278 + 124813258 124813298 41 AAGCATATCGATGCAGAATACTGACGTCTATAGGAGTGGGA AAGCATATTGATGCAGAATACTGACGTCTATAGGAGTGGGA < 41bp 1 0.377766868261077 1 0.158118188381195 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACADSB ENSG00000196177 CDS Human protein_coding chr10:124813278 chr10:124813266 synonymous SNV . 0 9 hm5C_associated_SNPs_21397 0 0 1 0 1 ACADSB chr10:124813211 3'AG 124813211 Downstream 56bp
chr11 74329760 74329760 1 + G T COAD 74329746 + 74329726 74329766 41 ACCTGCATCCAAGCAGGTTTCCCAGCAGCCCAAAGGAATTA ACCTGCATCCAAGCAGGTTTCCCAGCAGCCCAAATGAATTA < 41bp 1 0.498722671193798 1 0.248010694980621 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329746 chr11:74329760 stopgain 1.000 1 35 hm5C_associated_SNPs_21398 0 0 1 0 1 POLD3 chr11:74329849 5'GT 74329849 Upstream 90bp
chr11 74329760 74329760 1 + G T COAD 74329747 + 74329727 74329767 41 CCTGCATCCAAGCAGGTTTCCCAGCAGCCCAAAGGAATTAT CCTGCATCCAAGCAGGTTTCCCAGCAGCCCAAATGAATTAT < 41bp 1 0.247732443200171 1 0.152605295181274 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329747 chr11:74329760 stopgain 1.000 1 34 hm5C_associated_SNPs_21399 0 0 1 0 1 POLD3 chr11:74329849 5'GT 74329849 Upstream 90bp
chr11 74329760 74329760 1 + G T COAD 74329751 + 74329731 74329771 41 CATCCAAGCAGGTTTCCCAGCAGCCCAAAGGAATTATGGGA CATCCAAGCAGGTTTCCCAGCAGCCCAAATGAATTATGGGA < 41bp 1 0.29664619415106 1 0.561517417430878 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329751 chr11:74329760 stopgain 1.000 1 30 hm5C_associated_SNPs_21400 0 0 1 0 1 POLD3 chr11:74329849 5'GT 74329849 Upstream 90bp
chr11 74329760 74329760 1 + G T COAD 74329754 + 74329734 74329774 41 CCAAGCAGGTTTCCCAGCAGCCCAAAGGAATTATGGGAATG CCAAGCAGGTTTCCCAGCAGCCCAAATGAATTATGGGAATG < 41bp 1 0.506821091204581 1 0.151649385690689 experiment 0.986357817590839 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329754 chr11:74329760 stopgain 1.000 1 27 hm5C_associated_SNPs_21401 0 0 1 0 1 POLD3 chr11:74329849 5'GT 74329849 Upstream 90bp
chr2 175268834 175268834 1 + G A COAD 175268839 + 175268819 175268859 41 CTTTGAAAATAGAGGGAGTTCGTAATATTTCTAATCAACTT CTTTGAAAATAGAGGAAGTTCGTAATATTTCTAATCAACTT < 41bp 1 0.624402710298028 1 0.364207923412323 experiment 0.751194579403944 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SCRN3 ENSG00000144306 CDS Human protein_coding chr2:175268839 chr2:175268834 nonsynonymous SNV 0.992 4 16 hm5C_associated_SNPs_21402 0 0 0 0 1 SCRN3 chr2:175268831 3'AG 175268831 Downstream 4bp
chr4 141300287 141300287 1 + G T COAD 141300277 + 141300257 141300297 41 GAATTTTTCTTATTGTAGACCATTCCTCAAGAATTTTGTAT GAATTTTTCTTATTGTAGACCATTCCTCAATAATTTTGTAT < 41bp 1 0.0210917555982419 1 0.0381871461868286 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCOC ENSG00000153130 CDS Human protein_coding chr4:141300277 chr4:141300287 nonsynonymous SNV 0.018 2 31 hm5C_associated_SNPs_21405 0 0 1 0 2 SCOC chr4:141300275 3'AG 141300275 Downstream 13bp
chr4 141300287 141300287 1 + G T COAD 141300277 + 141300257 141300297 41 GAATTTTTCTTATTGTAGACCATTCCTCAAGAATTTTGTAT GAATTTTTCTTATTGTAGACCATTCCTCAATAATTTTGTAT < 41bp 1 0.0210917555982419 1 0.0381871461868286 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCOC ENSG00000153130 CDS Human protein_coding chr4:141300277 chr4:141300287 nonsynonymous SNV 0.018 2 31 hm5C_associated_SNPs_21405 0 0 1 0 2 SCOC chr4:141300346 5'GT 141300346 Upstream 60bp
chr9 5747485 5747485 1 + C T COAD 5747494 + 5747474 5747514 41 TACTTGGACATCGGCATTGGCATGTTGTACAGGTAAATCTT TACTTGGACATTGGCATTGGCATGTTGTACAGGTAAATCTT < 41bp 1 0.203750178307961 1 0.210411131381989 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RIC1 ENSG00000107036 CDS Human protein_coding chr9:5747494 chr9:5747485 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_21406 0 0 1 0 1 RIC1 chr9:5747505 5'GT 5747505 Upstream 21bp
chr5 7889295 7889295 1 + G A COAD 7889293 + 7889273 7889313 41 GTGCAGTAAACAAGGGGCAGCCGATTATAGCCGCTTTGTAC GTGCAGTAAACAAGGGGCAGCCAATTATAGCCGCTTTGTAC < 41bp 1 0.124612857362421 1 0.0679202377796173 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7889293 chr5:7889295 nonsynonymous SNV 0.013 4 23 hm5C_associated_SNPs_21409 0 0 0 0 2 MTRR chr5:7889208 3'AG 7889208 Downstream 88bp
chr5 7889295 7889295 1 + G A COAD 7889293 + 7889273 7889313 41 GTGCAGTAAACAAGGGGCAGCCGATTATAGCCGCTTTGTAC GTGCAGTAAACAAGGGGCAGCCAATTATAGCCGCTTTGTAC < 41bp 1 0.124612857362421 1 0.0679202377796173 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7889293 chr5:7889295 nonsynonymous SNV 0.013 4 23 hm5C_associated_SNPs_21409 0 0 0 0 2 MTRR chr5:7889388 5'GT 7889388 Upstream 94bp
chr19 42406145 42406145 1 + A G COAD 42406149 + 42406129 42406169 41 TTGGAGGAGCTGCAGAACATCTTCCCCAGCCTGGACGAGCT TTGGAGGAGCTGCAGAGCATCTTCCCCAGCCTGGACGAGCT < 41bp 1 0.107134821286807 1 0.194925397634506 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42406149 chr19:42406145 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_21410 0 0 1 0 1 ARHGEF1 chr19:42406183 5'GT 42406183 Upstream 39bp
chr3 50091793 50091793 1 + G A COAD 50091805 + 50091785 50091825 41 TGGGCACCGATCTTCCTGTTCATTCTGCAAGAACCCAAGAG TGGGCACCAATCTTCCTGTTCATTCTGCAAGAACCCAAGAG < 41bp 1 0.0479286480601481 1 0.0196280181407928 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50091805 chr3:50091793 nonsynonymous SNV 0.983 0 9 hm5C_associated_SNPs_21412 0 0 1 0 1 RBM6 chr3:50091828 5'GT 50091828 Upstream 36bp
chr3 141644455 141644455 1 + A C COAD 141644475 + 141644455 141644495 41 AGATTGATGGATCAGCCAACCTAAAAAGTCAGGATGATCGT CGATTGATGGATCAGCCAACCTAAAAAGTCAGGATGATCGT < 41bp 1 0.687961553581538 1 0.4543417096138 experiment 0.624076892836923 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141644475 chr3:141644455 nonsynonymous SNV 0.885 3 1 hm5C_associated_SNPs_21414 0 0 1 6 1 ATP1B3 chr3:141644373 3'AG 141644373 Downstream 83bp
chr19 54969677 54969677 1 + C T COAD 54969680 + 54969660 54969700 41 GATCGGGAGCGCAAGGTCGCCCTCAAGGCCATGATCAAAAC GATCGGGAGCGCAAGGTTGCCCTCAAGGCCATGATCAAAAC < 41bp 1 0.18046639622833 1 0.210039585828781 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54969680 chr19:54969677 synonymous SNV . 0 18 hm5C_associated_SNPs_21416 0 0 1 0 1 LENG8 chr19:54969700 5'GT 54969700 Upstream 24bp
chr12 62931429 62931429 1 + G A COAD 62931443 + 62931423 62931463 41 CTTGGCGCATTGCCATGGGGCTGTTCTTGGAACATCATGGC CTTGGCACATTGCCATGGGGCTGTTCTTGGAACATCATGGC < 41bp 1 0.162876678537092 1 0.0297220945358276 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62931443 chr12:62931429 synonymous SNV . 0 7 hm5C_associated_SNPs_21418 0 0 1 0 2 MON2 chr12:62931382 3'AG 62931382 Downstream 48bp
chr12 62931429 62931429 1 + G A COAD 62931443 + 62931423 62931463 41 CTTGGCGCATTGCCATGGGGCTGTTCTTGGAACATCATGGC CTTGGCACATTGCCATGGGGCTGTTCTTGGAACATCATGGC < 41bp 1 0.162876678537092 1 0.0297220945358276 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62931443 chr12:62931429 synonymous SNV . 0 7 hm5C_associated_SNPs_21418 0 0 1 0 2 MON2 chr12:62931486 5'GT 62931486 Upstream 58bp
chr7 142459804 142459804 1 + C A COAD 142459784 + 142459764 142459804 41 TCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTC TCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTA < 41bp 1 0.620001167613872 1 0.235833466053009 experiment 0.759997664772256 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459784 chr7:142459804 nonsynonymous SNV 0.004 5 41 hm5C_associated_SNPs_21419 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 75bp
chr7 142459804 142459804 1 + C A COAD 142459786 + 142459766 142459806 41 CTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTC CTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTATC < 41bp 1 0.44746153033111 1 0.0501893162727356 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459786 chr7:142459804 nonsynonymous SNV 0.004 5 39 hm5C_associated_SNPs_21420 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 75bp
chr7 142459804 142459804 1 + C A COAD 142459787 + 142459767 142459807 41 TCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCT TCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTATCT < 41bp 1 0.48771664822388 1 0.0813611447811127 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459787 chr7:142459804 nonsynonymous SNV 0.004 5 38 hm5C_associated_SNPs_21421 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 75bp
chr7 142459804 142459804 1 + C A COAD 142459788 + 142459768 142459808 41 CACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCTG CACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTATCTG < 41bp 1 0.727195888368494 1 0.035441130399704 experiment 0.545608223263013 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459788 chr7:142459804 nonsynonymous SNV 0.004 5 37 hm5C_associated_SNPs_21422 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 75bp
chr7 142459804 142459804 1 + C A COAD 142459790 + 142459770 142459810 41 CGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCC CGTGCAGTAATCAACGCCCGCGTGTCCACCATCTATCTGCC < 41bp 1 0.401360063520532 1 0.152843236923218 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459790 chr7:142459804 nonsynonymous SNV 0.004 5 35 hm5C_associated_SNPs_21423 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 75bp
chr7 142459804 142459804 1 + C A COAD 142459795 + 142459775 142459815 41 AGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCG AGTAATCAACGCCCGCGTGTCCACCATCTATCTGCCCACCG < 41bp 1 0.352415294911434 1 0.110317587852478 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459795 chr7:142459804 nonsynonymous SNV 0.004 5 30 hm5C_associated_SNPs_21424 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 75bp
chr7 142459804 142459804 1 + C A COAD 142459798 + 142459778 142459818 41 AATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCC AATCAACGCCCGCGTGTCCACCATCTATCTGCCCACCGCCC < 41bp 1 0.208145889119693 1 0.0593501031398773 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459798 chr7:142459804 nonsynonymous SNV 0.004 5 27 hm5C_associated_SNPs_21425 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 75bp
chr7 142459804 142459804 1 + C A COAD 142459799 + 142459779 142459819 41 ATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCC ATCAACGCCCGCGTGTCCACCATCTATCTGCCCACCGCCCC < 41bp 1 0.470076145173761 1 0.242048978805542 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459799 chr7:142459804 nonsynonymous SNV 0.004 5 26 hm5C_associated_SNPs_21426 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 75bp
chr7 142459804 142459804 1 + C A COAD 142459802 + 142459782 142459822 41 AACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCC AACGCCCGCGTGTCCACCATCTATCTGCCCACCGCCCCTCC < 41bp 1 0.399964453378537 1 0.265989124774933 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459802 chr7:142459804 nonsynonymous SNV 0.004 5 23 hm5C_associated_SNPs_21427 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 75bp
chr7 142459804 142459804 1 + C A COAD 142459806 + 142459786 142459826 41 CCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCC CCCGCGTGTCCACCATCTATCTGCCCACCGCCCCTCCAGCC < 41bp 1 0.632582246958623 1 0.454701989889145 experiment 0.734835506082754 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459806 chr7:142459804 nonsynonymous SNV 0.004 5 19 hm5C_associated_SNPs_21428 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 75bp
chr7 142459804 142459804 1 + C A COAD 142459809 + 142459789 142459829 41 GCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACT GCGTGTCCACCATCTATCTGCCCACCGCCCCTCCAGCCACT < 41bp 1 0.175681580755575 1 0.0344131290912628 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459809 chr7:142459804 nonsynonymous SNV 0.004 5 16 hm5C_associated_SNPs_21429 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 75bp
chr7 142459804 142459804 1 + C A COAD 142459810 + 142459790 142459830 41 CGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTG CGTGTCCACCATCTATCTGCCCACCGCCCCTCCAGCCACTG < 41bp 1 0.217305836137938 1 0.0542556643486023 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459810 chr7:142459804 nonsynonymous SNV 0.004 5 15 hm5C_associated_SNPs_21430 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 75bp
chr7 142459804 142459804 1 + C A COAD 142459811 + 142459791 142459831 41 GTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGG GTGTCCACCATCTATCTGCCCACCGCCCCTCCAGCCACTGG < 41bp 1 0.672236115930153 1 0.0410313010215759 experiment 0.655527768139695 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459811 chr7:142459804 nonsynonymous SNV 0.004 5 14 hm5C_associated_SNPs_21431 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 75bp
chr7 142459804 142459804 1 + C A COAD 142459813 + 142459793 142459833 41 GTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCA GTCCACCATCTATCTGCCCACCGCCCCTCCAGCCACTGGCA < 41bp 1 0.272822122220701 1 0.113057315349579 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459813 chr7:142459804 nonsynonymous SNV 0.004 5 12 hm5C_associated_SNPs_21432 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 75bp
chr7 142459804 142459804 1 + C A COAD 142459814 + 142459794 142459834 41 TCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCAC TCCACCATCTATCTGCCCACCGCCCCTCCAGCCACTGGCAC < 41bp 1 0.509472024669368 1 0.0934563279151917 experiment 0.981055950661263 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459814 chr7:142459804 nonsynonymous SNV 0.004 5 11 hm5C_associated_SNPs_21433 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 75bp
chr7 142459804 142459804 1 + C A COAD 142459816 + 142459796 142459836 41 CACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGA CACCATCTATCTGCCCACCGCCCCTCCAGCCACTGGCACGA < 41bp 1 0.256541132609554 1 0.200944125652313 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459816 chr7:142459804 nonsynonymous SNV 0.004 5 9 hm5C_associated_SNPs_21434 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 75bp
chr7 142459804 142459804 1 + C A COAD 142459817 + 142459797 142459837 41 ACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAA ACCATCTATCTGCCCACCGCCCCTCCAGCCACTGGCACGAA < 41bp 1 0.133849131824835 1 0.138438582420349 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459817 chr7:142459804 nonsynonymous SNV 0.004 5 8 hm5C_associated_SNPs_21435 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 75bp
chr7 142459804 142459804 1 + C A COAD 142459818 + 142459798 142459838 41 CCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAG CCATCTATCTGCCCACCGCCCCTCCAGCCACTGGCACGAAG < 41bp 1 0.146898637919564 1 0.234081625938416 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459818 chr7:142459804 nonsynonymous SNV 0.004 5 7 hm5C_associated_SNPs_21436 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 75bp
chr7 142459804 142459804 1 + C A COAD 142459819 + 142459799 142459839 41 CATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGT CATCTATCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGT < 41bp 1 0.701716170281054 1 0.918388605117798 experiment 0.596567659437892 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459819 chr7:142459804 nonsynonymous SNV 0.004 5 6 hm5C_associated_SNPs_21437 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 75bp
chr7 142459804 142459804 1 + C A COAD 142459821 + 142459801 142459841 41 TCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGC TCTATCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGC < 41bp 1 0.291515838136267 1 0.494764477014542 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459821 chr7:142459804 nonsynonymous SNV 0.004 5 4 hm5C_associated_SNPs_21438 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 75bp
chr7 142459804 142459804 1 + C A COAD 142459822 + 142459802 142459842 41 CTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCC CTATCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCC < 41bp 1 0.397983108585377 1 0.447665959596634 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459822 chr7:142459804 nonsynonymous SNV 0.004 5 3 hm5C_associated_SNPs_21439 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 75bp
chr4 76720859 76720859 1 + C A COAD 76720851 + 76720831 76720871 41 CAATTGTCCCATTGCAGTAACGCATTTTCTTCACAATTCAG CAATTGTCCCATTGCAGTAACGCATTTTATTCACAATTCAG < 41bp 1 0.191044083381172 1 0.0612104535102844 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USO1 ENSG00000138768 CDS Human protein_coding chr4:76720851 chr4:76720859 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_21440 0 0 1 0 2 USO1 chr4:76720775 3'AG 76720775 Downstream 85bp
chr4 76720859 76720859 1 + C A COAD 76720851 + 76720831 76720871 41 CAATTGTCCCATTGCAGTAACGCATTTTCTTCACAATTCAG CAATTGTCCCATTGCAGTAACGCATTTTATTCACAATTCAG < 41bp 1 0.191044083381172 1 0.0612104535102844 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USO1 ENSG00000138768 CDS Human protein_coding chr4:76720851 chr4:76720859 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_21440 0 0 1 0 2 USO1 chr4:76720885 5'GT 76720885 Upstream 27bp
chr19 14512311 14512311 1 + C A COAD 14512320 + 14512300 14512340 41 CTTGAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA CTTGAAGATATAATGAGGATCCTGGCCAAGAGCCTGCCTAA < 41bp 1 0.238606467521177 1 0.0483613014221191 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14512320 chr19:14512311 synonymous SNV . 0 12 hm5C_associated_SNPs_21441 0 0 1 0 1 ADGRE5 chr19:14512375 5'GT 14512375 Upstream 65bp
chr13 52293466 52293466 1 + C T COAD 52293456 + 52293436 52293476 41 GGCAGCGCCTGGGAGGTTATCGGACCAGTGCTGTGGCCTCA GGCAGCGCCTGGGAGGTTATCGGACCAGTGTTGTGGCCTCA < 41bp 1 0.477549305770621 1 0.901172637939453 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDFY2 ENSG00000139668 CDS Human protein_coding chr13:52293456 chr13:52293466 nonsynonymous SNV 0.988 2 31 hm5C_associated_SNPs_21442 0 0 1 0 1 WDFY2 chr13:52293484 5'GT 52293484 Upstream 19bp
chr8 124219663 124219663 1 + G A COAD 124219661 + 124219641 124219681 41 GCAGGCAGCCACCCCGGTACCCGAAGTGTGTCCGCGTCTTC GCAGGCAGCCACCCCGGTACCCAAAGTGTGTCCGCGTCTTC < 41bp 1 0.675944745764501 1 0.208119720220566 experiment 0.648110508470998 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM83A ENSG00000147689 CDS Human protein_coding chr8:124219661 chr8:124219663 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_21443 0 0 1 0 1 FAM83A chr8:124219665 5'GT 124219665 Upstream 3bp
chr4 42024887 42024887 1 + G A COAD 42024868 + 42024848 42024888 41 TCTCTAGTGATCTAGAACAACTTCGAAAAATCAGACGACGA TCTCTAGTGATCTAGAACAACTTCGAAAAATCAGACGACAA < 41bp 1 0.372640638154111 1 0.267078638076782 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42024868 chr4:42024887 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_21444 0 0 1 0 2 SLC30A9 chr4:42024855 3'AG 42024855 Downstream 33bp
chr4 42024887 42024887 1 + G A COAD 42024868 + 42024848 42024888 41 TCTCTAGTGATCTAGAACAACTTCGAAAAATCAGACGACGA TCTCTAGTGATCTAGAACAACTTCGAAAAATCAGACGACAA < 41bp 1 0.372640638154111 1 0.267078638076782 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42024868 chr4:42024887 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_21444 0 0 1 0 2 SLC30A9 chr4:42024947 5'GT 42024947 Upstream 61bp
chr5 33466980 33466980 1 + G A COAD 33466993 + 33466973 33467013 41 TAGGTACGACAACAATTCCACGATGCCAAATTCATGGCAGA TAGGTACAACAACAATTCCACGATGCCAAATTCATGGCAGA < 41bp 1 0.145515982548766 1 0.105035245418549 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33466993 chr5:33466980 nonsynonymous SNV 0.997 1 8 hm5C_associated_SNPs_21445 0 0 1 0 1 TARS chr5:33466976 3'AG 33466976 Downstream 5bp
chr10 91532533 91532533 1 + A G COAD 91532517 + 91532497 91532537 41 CAAGTAAAGAAAATGTGTCTCAACCAAAACGAGCCAAACGG CAAGTAAAGAAAATGTGTCTCAACCAAAACGAGCCAGACGG < 41bp 1 0.304553285375495 1 0.503808438777924 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control KIF20B ENSG00000138182 CDS Human protein_coding chr10:91532517 chr10:91532533 nonsynonymous SNV 0.991 3 37 hm5C_associated_SNPs_21446 0 0 1 0 2 KIF20B chr10:91532446 3'AG 91532446 Downstream 88bp
chr10 91532533 91532533 1 + A G COAD 91532517 + 91532497 91532537 41 CAAGTAAAGAAAATGTGTCTCAACCAAAACGAGCCAAACGG CAAGTAAAGAAAATGTGTCTCAACCAAAACGAGCCAGACGG < 41bp 1 0.304553285375495 1 0.503808438777924 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control KIF20B ENSG00000138182 CDS Human protein_coding chr10:91532517 chr10:91532533 nonsynonymous SNV 0.991 3 37 hm5C_associated_SNPs_21446 0 0 1 0 2 KIF20B chr10:91532588 5'GT 91532588 Upstream 56bp
chr21 45736396 45736396 1 + G A COAD 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCAACCGGA < 41bp 1 0.374553897094168 1 0.336008489131927 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736396 nonsynonymous SNV 0.662 5 35 hm5C_associated_SNPs_21447 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 82bp
chr21 45736396 45736396 1 + G A COAD 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCAACCGGA < 41bp 1 0.374553897094168 1 0.336008489131927 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736396 nonsynonymous SNV 0.662 5 35 hm5C_associated_SNPs_21447 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 12bp
chr21 45736396 45736396 1 + G A COAD 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCAACCGGATC < 41bp 1 0.0847944129907426 1 0.119255483150482 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736396 nonsynonymous SNV 0.662 5 33 hm5C_associated_SNPs_21448 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 82bp
chr21 45736396 45736396 1 + G A COAD 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCAACCGGATC < 41bp 1 0.0847944129907426 1 0.119255483150482 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736396 nonsynonymous SNV 0.662 5 33 hm5C_associated_SNPs_21448 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 12bp
chr21 45736396 45736396 1 + G A COAD 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCAACCGGATCC < 41bp 1 0.0801170541311789 1 0.06883904337883 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736396 nonsynonymous SNV 0.662 5 32 hm5C_associated_SNPs_21449 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 82bp
chr21 45736396 45736396 1 + G A COAD 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCAACCGGATCC < 41bp 1 0.0801170541311789 1 0.06883904337883 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736396 nonsynonymous SNV 0.662 5 32 hm5C_associated_SNPs_21449 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 12bp
chr21 45736396 45736396 1 + G A COAD 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT GTGCAGCGGGGAGGGACGCCCTCTGCCTTCAACCGGATCCT < 41bp 1 0.408520049874708 1 0.291873931884766 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736396 nonsynonymous SNV 0.662 5 31 hm5C_associated_SNPs_21450 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 82bp
chr21 45736396 45736396 1 + G A COAD 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT GTGCAGCGGGGAGGGACGCCCTCTGCCTTCAACCGGATCCT < 41bp 1 0.408520049874708 1 0.291873931884766 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736396 nonsynonymous SNV 0.662 5 31 hm5C_associated_SNPs_21450 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 12bp
chr2 45879498 45879498 1 + G A COAD 45879512 + 45879492 45879532 41 CACGATGCCCCCATAGGCTACGACGACTTCGTGGCCAACTG CACGATACCCCCATAGGCTACGACGACTTCGTGGCCAACTG < 41bp 1 0.318347492929677 1 0.168233394622803 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKCE ENSG00000171132 CDS Human protein_coding chr2:45879512 chr2:45879498 nonsynonymous SNV 0.998 1 7 hm5C_associated_SNPs_21451 0 0 1 0 1 PRKCE chr2:45879587 5'GT 45879587 Upstream 90bp
chr4 154318411 154318411 1 + G A COAD 154318425 + 154318405 154318445 41 CACTTCGAGACCAAAGGGAACAGCTAAAGGCAGAAGTAGAA CACTTCAAGACCAAAGGGAACAGCTAAAGGCAGAAGTAGAA < 41bp 1 0.300892452089389 1 0.281884759664536 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MND1 ENSG00000121211 CDS Human protein_coding chr4:154318425 chr4:154318411 nonsynonymous SNV 0.855 0 7 hm5C_associated_SNPs_21452 0 0 1 0 2 MND1 chr4:154318371 3'AG 154318371 Downstream 41bp
chr4 154318411 154318411 1 + G A COAD 154318425 + 154318405 154318445 41 CACTTCGAGACCAAAGGGAACAGCTAAAGGCAGAAGTAGAA CACTTCAAGACCAAAGGGAACAGCTAAAGGCAGAAGTAGAA < 41bp 1 0.300892452089389 1 0.281884759664536 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MND1 ENSG00000121211 CDS Human protein_coding chr4:154318425 chr4:154318411 nonsynonymous SNV 0.855 0 7 hm5C_associated_SNPs_21452 0 0 1 0 2 MND1 chr4:154318485 5'GT 154318485 Upstream 75bp
chr16 56362619 56362619 1 + C A COAD 56362604 + 56362584 56362624 41 AGACACCGAGCCCTTCTCTGCAGAGCTGCTTTCTGCCATGA AGACACCGAGCCCTTCTCTGCAGAGCTGCTTTCTGACATGA < 41bp 1 0.434209986458295 1 0.565219640731812 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control GNAO1 ENSG00000087258 CDS Human protein_coding chr16:56362604 chr16:56362619 nonsynonymous SNV 0.985 3 36 hm5C_associated_SNPs_21453 0 0 0 0 2 GNAO1 chr16:56362543 3'AG 56362543 Downstream 77bp
chr16 56362619 56362619 1 + C A COAD 56362604 + 56362584 56362624 41 AGACACCGAGCCCTTCTCTGCAGAGCTGCTTTCTGCCATGA AGACACCGAGCCCTTCTCTGCAGAGCTGCTTTCTGACATGA < 41bp 1 0.434209986458295 1 0.565219640731812 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control GNAO1 ENSG00000087258 CDS Human protein_coding chr16:56362604 chr16:56362619 nonsynonymous SNV 0.985 3 36 hm5C_associated_SNPs_21453 0 0 0 0 2 GNAO1 chr16:56362703 5'GT 56362703 Upstream 85bp
chr3 127786399 127786399 1 + T C COAD 127786410 + 127786390 127786430 41 ATGCTGGGCTCCTGTGCATTCTTCTCCAAAACGTGGATTGA ATGCTGGGCCCCTGTGCATTCTTCTCCAAAACGTGGATTGA < 41bp 1 0.264825056023607 1 0.381560742855072 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SEC61A1 ENSG00000058262 CDS Human protein_coding chr3:127786410 chr3:127786399 nonsynonymous SNV 0.876 2 10 hm5C_associated_SNPs_21454 0 0 1 0 1 SEC61A1 chr3:127786455 5'GT 127786455 Upstream 57bp
chr1 93988962 93988962 1 + C T COAD 93988959 + 93988939 93988979 41 AGTTAAATGACTATGCAGGACAGCGAGAAGTTGTAGCAGAA AGTTAAATGACTATGCAGGACAGTGAGAAGTTGTAGCAGAA < 41bp 1 0.360565272173362 1 0.165816247463226 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FNBP1L ENSG00000137942 CDS Human protein_coding chr1:93988959 chr1:93988962 stopgain 1.000 1 24 hm5C_associated_SNPs_21455 0 0 1 0 2 FNBP1L chr1:93988901 3'AG 93988901 Downstream 62bp
chr1 93988962 93988962 1 + C T COAD 93988959 + 93988939 93988979 41 AGTTAAATGACTATGCAGGACAGCGAGAAGTTGTAGCAGAA AGTTAAATGACTATGCAGGACAGTGAGAAGTTGTAGCAGAA < 41bp 1 0.360565272173362 1 0.165816247463226 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FNBP1L ENSG00000137942 CDS Human protein_coding chr1:93988959 chr1:93988962 stopgain 1.000 1 24 hm5C_associated_SNPs_21455 0 0 1 0 2 FNBP1L chr1:93989048 5'GT 93989048 Upstream 87bp
chr5 179137044 179137044 1 + G T COAD 179137028 + 179137008 179137048 41 GCCAGATGCAGATCTGAAGACCTATTTTACTGATAAGAAAA GCCAGATGCAGATCTGAAGACCTATTTTACTGATAATAAAA < 41bp 1 0.0600962736739053 1 0.0819166600704193 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179137028 chr5:179137044 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_21456 0 0 1 0 1 CANX chr5:179137066 5'GT 179137066 Upstream 23bp
chr2 192141729 192141729 1 + G A COAD 192141711 + 192141691 192141731 41 GAACCTCTCAATGAGGAGACCTTCATCAACAACCTCAAGAA GAACCTCTCAATGAGGAGACCTTCATCAACAACCTCAAAAA < 41bp 1 0.365217392209723 1 0.124571055173874 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYO1B ENSG00000128641 CDS Human protein_coding chr2:192141711 chr2:192141729 synonymous SNV . 0 39 hm5C_associated_SNPs_21457 0 0 1 0 1 MYO1B chr2:192141756 5'GT 192141756 Upstream 28bp
chr1 70700410 70700410 1 + C G COAD 70700412 + 70700392 70700432 41 CACTGGCTGCTTTGGGGGCTCCTACTCTTGATCCTGCCCTT CACTGGCTGCTTTGGGGGGTCCTACTCTTGATCCTGCCCTT < 41bp 1 0.281157820406932 1 0.130056172609329 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70700412 chr1:70700410 nonsynonymous SNV 0.998 1 19 hm5C_associated_SNPs_21459 0 0 1 0 2 SRSF11 chr1:70700379 3'AG 70700379 Downstream 32bp
chr1 70700410 70700410 1 + C G COAD 70700412 + 70700392 70700432 41 CACTGGCTGCTTTGGGGGCTCCTACTCTTGATCCTGCCCTT CACTGGCTGCTTTGGGGGGTCCTACTCTTGATCCTGCCCTT < 41bp 1 0.281157820406932 1 0.130056172609329 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70700412 chr1:70700410 nonsynonymous SNV 0.998 1 19 hm5C_associated_SNPs_21459 0 0 1 0 2 SRSF11 chr1:70700471 5'GT 70700471 Upstream 62bp
chr14 100950404 100950404 1 + C A COAD 100950419 + 100950399 100950439 41 AACATCTTTTTATGTGGAGGCTTCAGCTCTGAAATGAAAGC AACATATTTTTATGTGGAGGCTTCAGCTCTGAAATGAAAGC < 41bp 1 0.176846161425975 1 0.321317136287689 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR25 ENSG00000176473 CDS Human protein_coding chr14:100950419 chr14:100950404 synonymous SNV . 0 6 hm5C_associated_SNPs_21461 0 0 0 0 2 WDR25 chr14:100950331 3'AG 100950331 Downstream 74bp
chr14 100950404 100950404 1 + C A COAD 100950419 + 100950399 100950439 41 AACATCTTTTTATGTGGAGGCTTCAGCTCTGAAATGAAAGC AACATATTTTTATGTGGAGGCTTCAGCTCTGAAATGAAAGC < 41bp 1 0.176846161425975 1 0.321317136287689 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR25 ENSG00000176473 CDS Human protein_coding chr14:100950419 chr14:100950404 synonymous SNV . 0 6 hm5C_associated_SNPs_21461 0 0 0 0 2 WDR25 chr14:100950461 5'GT 100950461 Upstream 58bp
chrX 64956698 64956698 1 + A G COAD 64956685 + 64956665 64956705 41 TGGAAAATGAGAAGAAGAAGCGTGAAATGGCAGAGAAGGAG TGGAAAATGAGAAGAAGAAGCGTGAAATGGCAGGGAAGGAG < 41bp 1 0.58178139500506 1 0.563531279563904 experiment 0.83643720998988 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956685 chrX:64956698 nonsynonymous SNV 0.998 3 34 hm5C_associated_SNPs_21462 0 0 1 0 2 MSN chrX:64956657 3'AG 64956657 Downstream 42bp
chrX 64956698 64956698 1 + A G COAD 64956685 + 64956665 64956705 41 TGGAAAATGAGAAGAAGAAGCGTGAAATGGCAGAGAAGGAG TGGAAAATGAGAAGAAGAAGCGTGAAATGGCAGGGAAGGAG < 41bp 1 0.58178139500506 1 0.563531279563904 experiment 0.83643720998988 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956685 chrX:64956698 nonsynonymous SNV 0.998 3 34 hm5C_associated_SNPs_21462 0 0 1 0 2 MSN chrX:64956787 5'GT 64956787 Upstream 90bp
chrX 64956698 64956698 1 + A G COAD 64956695 + 64956675 64956715 41 GAAGAAGAAGCGTGAAATGGCAGAGAAGGAGAAAGAGAAGA GAAGAAGAAGCGTGAAATGGCAGGGAAGGAGAAAGAGAAGA < 41bp 1 0.748846314132169 1 0.646152555942535 experiment 0.502307371735661 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956695 chrX:64956698 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_21463 0 0 1 0 2 MSN chrX:64956657 3'AG 64956657 Downstream 42bp
chrX 64956698 64956698 1 + A G COAD 64956695 + 64956675 64956715 41 GAAGAAGAAGCGTGAAATGGCAGAGAAGGAGAAAGAGAAGA GAAGAAGAAGCGTGAAATGGCAGGGAAGGAGAAAGAGAAGA < 41bp 1 0.748846314132169 1 0.646152555942535 experiment 0.502307371735661 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956695 chrX:64956698 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_21463 0 0 1 0 2 MSN chrX:64956787 5'GT 64956787 Upstream 90bp
chr3 9489384 9489384 1 + A C COAD 9489393 + 9489373 9489413 41 ATTGCTGCAGAAAAACTAGTCCCCAAGCCACCTCCAGCAAA ATTGCTGCAGACAAACTAGTCCCCAAGCCACCTCCAGCAAA < 41bp 1 0.542962418640555 1 0.113795667886734 experiment 0.91407516271889 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SETD5 ENSG00000168137 CDS Human protein_coding chr3:9489393 chr3:9489384 nonsynonymous SNV 1.000 5 12 hm5C_associated_SNPs_21464 0 0 1 0 1 SETD5 chr3:9489370 3'AG 9489370 Downstream 15bp
chr11 73068164 73068164 1 + G A COAD 73068165 + 73068145 73068185 41 AAGTCAGGCTCCCTGCGGCGCAGCTCCATGAGCCTGTGAGT AAGTCAGGCTCCCTGCGGCACAGCTCCATGAGCCTGTGAGT < 41bp 1 0.129506441828612 1 0.0574177801609039 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73068165 chr11:73068164 nonsynonymous SNV 0.999 4 20 hm5C_associated_SNPs_21465 0 0 1 0 2 ARHGEF17 chr11:73068070 3'AG 73068070 Downstream 95bp
chr11 73068164 73068164 1 + G A COAD 73068165 + 73068145 73068185 41 AAGTCAGGCTCCCTGCGGCGCAGCTCCATGAGCCTGTGAGT AAGTCAGGCTCCCTGCGGCACAGCTCCATGAGCCTGTGAGT < 41bp 1 0.129506441828612 1 0.0574177801609039 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73068165 chr11:73068164 nonsynonymous SNV 0.999 4 20 hm5C_associated_SNPs_21465 0 0 1 0 2 ARHGEF17 chr11:73068179 5'GT 73068179 Upstream 16bp
chr1 171519335 171519335 1 + T C COAD 171519315 + 171519295 171519335 41 TGGTTTTACTGAAGTGGTATCCAAAAAACAACAAAAACGTT TGGTTTTACTGAAGTGGTATCCAAAAAACAACAAAAACGTC < 41bp 1 0.10057368256707 1 0.741185307502747 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171519315 chr1:171519335 synonymous SNV . 0 41 hm5C_associated_SNPs_21466 0 0 1 0 1 PRRC2C chr1:171519379 5'GT 171519379 Upstream 45bp
chr11 113126684 113126684 1 + C T COAD 113126689 + 113126669 113126709 41 CAAGCAGGATGACGGCGGCTCCCCCATCAGACACTATCTGG CAAGCAGGATGACGGTGGCTCCCCCATCAGACACTATCTGG < 41bp 1 0.0912043667520578 1 0.0665747821331024 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113126689 chr11:113126684 synonymous SNV . 0 16 hm5C_associated_SNPs_21468 0 0 0 0 1 NCAM1 chr11:113126723 5'GT 113126723 Upstream 40bp
chr1 114450784 114450784 1 + G A COAD 114450803 + 114450783 114450823 41 CGAAAACACCCACAACATAACATAAAGATTGGTGAGTTGTT CAAAAACACCCACAACATAACATAAAGATTGGTGAGTTGTT < 41bp 1 0.28761102348387 1 0.0924536287784576 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCLRE1B ENSG00000118655 CDS Human protein_coding chr1:114450803 chr1:114450784 nonsynonymous SNV 0.914 0 2 hm5C_associated_SNPs_21470 0 0 1 0 1 DCLRE1B chr1:114450813 5'GT 114450813 Upstream 30bp
chr19 35530575 35530575 1 + G T COAD 35530583 + 35530563 35530603 41 TGAAAGCAAAGAGAACTGCACGGGCGTCCAGGTGGCCGAAT TGAAAGCAAAGATAACTGCACGGGCGTCCAGGTGGCCGAAT < 41bp 1 0.576914944187307 1 0.50132143497467 experiment 0.846170111625385 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCN1B ENSG00000105711 CDS Human protein_coding chr19:35530583 chr19:35530575 nonsynonymous SNV 0.999 1 13 hm5C_associated_SNPs_21471 0 0 0 0 2 SCN1B chr19:35530539 3'AG 35530539 Downstream 37bp
chr19 35530575 35530575 1 + G T COAD 35530583 + 35530563 35530603 41 TGAAAGCAAAGAGAACTGCACGGGCGTCCAGGTGGCCGAAT TGAAAGCAAAGATAACTGCACGGGCGTCCAGGTGGCCGAAT < 41bp 1 0.576914944187307 1 0.50132143497467 experiment 0.846170111625385 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCN1B ENSG00000105711 CDS Human protein_coding chr19:35530583 chr19:35530575 nonsynonymous SNV 0.999 1 13 hm5C_associated_SNPs_21471 0 0 0 0 2 SCN1B chr19:35530610 5'GT 35530610 Upstream 36bp
chr7 139094363 139094363 1 + G T COAD 139094348 + 139094328 139094368 41 AGGAGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAG AGGAGAAAAGAAACCAGGAACGGCTGAAACGAAGATAAGAG < 41bp 1 0.506929175665854 1 0.351795077323914 experiment 0.986141648668291 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094348 chr7:139094363 stopgain 1.000 1 36 hm5C_associated_SNPs_21473 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 55bp
chr7 139094363 139094363 1 + G T COAD 139094348 + 139094328 139094368 41 AGGAGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAG AGGAGAAAAGAAACCAGGAACGGCTGAAACGAAGATAAGAG < 41bp 1 0.506929175665854 1 0.351795077323914 experiment 0.986141648668291 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094348 chr7:139094363 stopgain 1.000 1 36 hm5C_associated_SNPs_21473 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 38bp
chr7 139094363 139094363 1 + G T COAD 139094351 + 139094331 139094371 41 AGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGA AGAAAAGAAACCAGGAACGGCTGAAACGAAGATAAGAGAGA < 41bp 1 0.52678348837188 1 0.438538461923599 experiment 0.94643302325624 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094351 chr7:139094363 stopgain 1.000 1 33 hm5C_associated_SNPs_21474 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 55bp
chr7 139094363 139094363 1 + G T COAD 139094351 + 139094331 139094371 41 AGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGA AGAAAAGAAACCAGGAACGGCTGAAACGAAGATAAGAGAGA < 41bp 1 0.52678348837188 1 0.438538461923599 experiment 0.94643302325624 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094351 chr7:139094363 stopgain 1.000 1 33 hm5C_associated_SNPs_21474 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 38bp
chr7 139094363 139094363 1 + G T COAD 139094357 + 139094337 139094377 41 GAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGAGAGAGA GAAACCAGGAACGGCTGAAACGAAGATAAGAGAGAGAGAGA < 41bp 1 0.673133203753169 1 0.698159396648407 experiment 0.653733592493663 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094357 chr7:139094363 stopgain 1.000 1 27 hm5C_associated_SNPs_21475 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 55bp
chr7 139094363 139094363 1 + G T COAD 139094357 + 139094337 139094377 41 GAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGAGAGAGA GAAACCAGGAACGGCTGAAACGAAGATAAGAGAGAGAGAGA < 41bp 1 0.673133203753169 1 0.698159396648407 experiment 0.653733592493663 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094357 chr7:139094363 stopgain 1.000 1 27 hm5C_associated_SNPs_21475 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 38bp
chr1 242030149 242030149 1 + T C COAD 242030150 + 242030130 242030170 41 AGCCTGCCCATTCAAGAAGTCATAGTTGGGATGACAAAACA AGCCTGCCCATTCAAGAAGCCATAGTTGGGATGACAAAACA < 41bp 1 0.195544424405565 1 0.0657819211483002 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXO1 ENSG00000174371 CDS Human protein_coding chr1:242030150 chr1:242030149 synonymous SNV . 0 20 hm5C_associated_SNPs_21477 0 0 1 0 1 EXO1 chr1:242030132 3'AG 242030132 Downstream 18bp
chr1 3646683 3646683 1 + C T COAD 3646695 + 3646675 3646715 41 GCACAGTTCGGCAGCTACACCCAACCTGGGGCCCGTGGGTG GCACAGTTTGGCAGCTACACCCAACCTGGGGCCCGTGGGTG < 41bp 1 0.181603887821932 1 0.420346975326538 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TP73 ENSG00000078900 CDS Human protein_coding chr1:3646695 chr1:3646683 nonsynonymous SNV 0.010 1 9 hm5C_associated_SNPs_21478 0 0 0 0 1 TP73 chr1:3646712 5'GT 3646712 Upstream 30bp
chr2 32800267 32800267 1 + G A COAD 32800281 + 32800261 32800301 41 CTGCTGGAATTGCTTCGGGCCATTGCTTCTTGTGCTGCCAT CTGCTGAAATTGCTTCGGGCCATTGCTTCTTGTGCTGCCAT < 41bp 1 0.0379342771466209 1 0.122171849012375 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32800281 chr2:32800267 nonsynonymous SNV 0.997 3 7 hm5C_associated_SNPs_21479 0 0 1 0 1 BIRC6 chr2:32800223 3'AG 32800223 Downstream 45bp
chr5 32093031 32093031 1 + C A COAD 32093044 + 32093024 32093064 41 TTCTAGTCTCAGCGGGGGACCAGCAAAGATTACAGTCTGTT TTCTAGTATCAGCGGGGGACCAGCAAAGATTACAGTCTGTT < 41bp 1 0.149049559857833 1 0.517552435398102 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32093044 chr5:32093031 synonymous SNV . 0 8 hm5C_associated_SNPs_21480 0 0 0 0 2 PDZD2 chr5:32093013 3'AG 32093013 Downstream 19bp
chr5 32093031 32093031 1 + C A COAD 32093044 + 32093024 32093064 41 TTCTAGTCTCAGCGGGGGACCAGCAAAGATTACAGTCTGTT TTCTAGTATCAGCGGGGGACCAGCAAAGATTACAGTCTGTT < 41bp 1 0.149049559857833 1 0.517552435398102 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32093044 chr5:32093031 synonymous SNV . 0 8 hm5C_associated_SNPs_21480 0 0 0 0 2 PDZD2 chr5:32093130 5'GT 32093130 Upstream 100bp
chr7 129046288 129046288 1 + A G COAD 129046285 + 129046265 129046305 41 TGTATGTAACTGAAATTGACCCCATCTGTGCCCTGCAAGCC TGTATGTAACTGAAATTGACCCCGTCTGTGCCCTGCAAGCC < 41bp 1 0.269507718611059 1 0.0375047624111176 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129046285 chr7:129046288 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_21481 0 0 0 0 2 AHCYL2 chr7:129046219 3'AG 129046219 Downstream 70bp
chr7 129046288 129046288 1 + A G COAD 129046285 + 129046265 129046305 41 TGTATGTAACTGAAATTGACCCCATCTGTGCCCTGCAAGCC TGTATGTAACTGAAATTGACCCCGTCTGTGCCCTGCAAGCC < 41bp 1 0.269507718611059 1 0.0375047624111176 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129046285 chr7:129046288 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_21481 0 0 0 0 2 AHCYL2 chr7:129046307 5'GT 129046307 Upstream 20bp
chr5 130726772 130726772 1 + G A COAD 130726785 + 130726765 130726805 41 TGGATACGAAGGCGGGATAGCCCTGGTCCTTTCTCCAGTGA TGGATACAAAGGCGGGATAGCCCTGGTCCTTTCTCCAGTGA < 41bp 1 0.521209314156956 1 0.119771957397461 experiment 0.957581371686088 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDC42SE2 ENSG00000158985 CDS Human protein_coding chr5:130726785 chr5:130726772 synonymous SNV . 0 8 hm5C_associated_SNPs_21483 0 0 1 0 2 CDC42SE2 chr5:130726686 3'AG 130726686 Downstream 87bp
chr5 130726772 130726772 1 + G A COAD 130726785 + 130726765 130726805 41 TGGATACGAAGGCGGGATAGCCCTGGTCCTTTCTCCAGTGA TGGATACAAAGGCGGGATAGCCCTGGTCCTTTCTCCAGTGA < 41bp 1 0.521209314156956 1 0.119771957397461 experiment 0.957581371686088 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDC42SE2 ENSG00000158985 CDS Human protein_coding chr5:130726785 chr5:130726772 synonymous SNV . 0 8 hm5C_associated_SNPs_21483 0 0 1 0 2 CDC42SE2 chr5:130726801 5'GT 130726801 Upstream 30bp
chr14 100594937 100594937 1 + C T COAD 100594949 + 100594929 100594969 41 CCCCCCACCCCCAGTCCCACCTCCACCCACTGGGGCTACCC CCCCCCACTCCCAGTCCCACCTCCACCCACTGGGGCTACCC < 41bp 1 0.700218257720848 1 0.921761751174927 experiment 0.599563484558305 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EVL ENSG00000196405 CDS Human protein_coding chr14:100594949 chr14:100594937 nonsynonymous SNV 0.954 1 9 hm5C_associated_SNPs_21484 0 0 0 0 1 EVL chr14:100594856 3'AG 100594856 Downstream 82bp
chr1 168014214 168014214 1 + T C COAD 168014224 + 168014204 168014244 41 TTGATCGCTCTTGTGGGGTTCCAGAAGAATCTGCTTCATCT TTGATCGCTCCTGTGGGGTTCCAGAAGAATCTGCTTCATCT < 41bp 1 0.39582916803499 1 0.474137127399445 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DCAF6 ENSG00000143164 CDS Human protein_coding chr1:168014224 chr1:168014214 synonymous SNV . 0 11 hm5C_associated_SNPs_21485 0 0 1 0 1 DCAF6 chr1:168014138 3'AG 168014138 Downstream 77bp
chr18 48604717 48604717 1 + C G COAD 48604710 + 48604690 48604730 41 TTTTGTGAAAGGCTGGGGACCGGATTACCCAAGACAGAGCA TTTTGTGAAAGGCTGGGGACCGGATTAGCCAAGACAGAGCA < 41bp 1 0.482256560135884 1 0.632801651954651 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48604710 chr18:48604717 stopgain 1.000 1 28 hm5C_associated_SNPs_21486 0 0 1 0 1 SMAD4 chr18:48604626 3'AG 48604626 Downstream 92bp
chr18 2751361 2751361 1 + G A COAD 2751377 + 2751357 2751397 41 AGCTGTCTACCAGTGGGAACCGACCCCCAGCAAATGTGAGT AGCTATCTACCAGTGGGAACCGACCCCCAGCAAATGTGAGT < 41bp 1 0.146025089404906 1 0.466603130102158 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMCHD1 ENSG00000101596 CDS Human protein_coding chr18:2751377 chr18:2751361 synonymous SNV . 0 5 hm5C_associated_SNPs_21487 0 0 1 0 2 SMCHD1 chr18:2751276 3'AG 2751276 Downstream 86bp
chr18 2751361 2751361 1 + G A COAD 2751377 + 2751357 2751397 41 AGCTGTCTACCAGTGGGAACCGACCCCCAGCAAATGTGAGT AGCTATCTACCAGTGGGAACCGACCCCCAGCAAATGTGAGT < 41bp 1 0.146025089404906 1 0.466603130102158 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMCHD1 ENSG00000101596 CDS Human protein_coding chr18:2751377 chr18:2751361 synonymous SNV . 0 5 hm5C_associated_SNPs_21487 0 0 1 0 2 SMCHD1 chr18:2751391 5'GT 2751391 Upstream 31bp
chr16 81053826 81053826 1 + C T COAD 81053845 + 81053825 81053865 41 CCGTACGCCTTCACGTCCTCCTCCATGCTGAGGCGCAATAC CTGTACGCCTTCACGTCCTCCTCCATGCTGAGGCGCAATAC < 41bp 1 0.78697458256576 1 0.919452786445618 experiment 0.42605083486848 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CENPN ENSG00000166451 CDS Human protein_coding chr16:81053845 chr16:81053826 nonsynonymous SNV 0.106 3 2 hm5C_associated_SNPs_21488 0 0 1 0 1 CENPN chr16:81053881 5'GT 81053881 Upstream 56bp
chr12 110457028 110457028 1 + G A COAD 110457008 + 110456988 110457028 41 GTCACCACCGAACGCTTCGACCTTTCCCAAGAAATGGAGCG GTCACCACCGAACGCTTCGACCTTTCCCAAGAAATGGAGCA < 41bp 1 0.0139172734935249 1 0.0654219686985016 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110457008 chr12:110457028 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_21490 0 0 1 1 1 ANKRD13A chr12:110456944 3'AG 110456944 Downstream 85bp
chr1 230379147 230379147 1 + G A COAD 230379152 + 230379132 230379172 41 AATGAGCACTGGCTGGAGCCCCTCCTGGAAAGGGTGGCGGA AATGAGCACTGGCTGAAGCCCCTCCTGGAAAGGGTGGCGGA < 41bp 1 0.0719049641685656 1 0.098885178565979 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230379152 chr1:230379147 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_21491 0 0 1 0 2 GALNT2 chr1:230379052 3'AG 230379052 Downstream 96bp
chr1 230379147 230379147 1 + G A COAD 230379152 + 230379132 230379172 41 AATGAGCACTGGCTGGAGCCCCTCCTGGAAAGGGTGGCGGA AATGAGCACTGGCTGAAGCCCCTCCTGGAAAGGGTGGCGGA < 41bp 1 0.0719049641685656 1 0.098885178565979 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230379152 chr1:230379147 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_21491 0 0 1 0 2 GALNT2 chr1:230379173 5'GT 230379173 Upstream 27bp
chr7 98563390 98563390 1 + C T COAD 98563380 + 98563360 98563400 41 ACGCGCCTGGCAGTGATGAGCATGGAGATGCGGAAGAACTT ACGCGCCTGGCAGTGATGAGCATGGAGATGTGGAAGAACTT < 41bp 1 0.162231347450355 1 0.385553896427155 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98563380 chr7:98563390 nonsynonymous SNV 0.998 4 31 hm5C_associated_SNPs_21492 0 0 1 0 1 TRRAP chr7:98563319 3'AG 98563319 Downstream 72bp
chr6 144782343 144782343 1 + C T COAD 144782344 + 144782324 144782364 41 AATAAACAGAACTGAAGGGCCAACCTGGACATGCATATCTG AATAAACAGAACTGAAGGGTCAACCTGGACATGCATATCTG < 41bp 1 0.0498264360246731 1 0.112891912460327 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144782344 chr6:144782343 synonymous SNV . 0 20 hm5C_associated_SNPs_21493 0 0 1 0 1 UTRN chr6:144782333 3'AG 144782333 Downstream 11bp
chr7 43591841 43591841 1 + G A COAD 43591843 + 43591823 43591863 41 TGTAGACTCGAGGCTGGTGTCCGTGTTTGATGCCAGGGAGC TGTAGACTCGAGGCTGGTATCCGTGTTTGATGCCAGGGAGC < 41bp 1 0.210981113023713 1 0.612351417541504 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43591843 chr7:43591841 synonymous SNV . 0 19 hm5C_associated_SNPs_21494 0 0 0 0 2 HECW1 chr7:43591821 3'AG 43591821 Downstream 21bp
chr7 43591841 43591841 1 + G A COAD 43591843 + 43591823 43591863 41 TGTAGACTCGAGGCTGGTGTCCGTGTTTGATGCCAGGGAGC TGTAGACTCGAGGCTGGTATCCGTGTTTGATGCCAGGGAGC < 41bp 1 0.210981113023713 1 0.612351417541504 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43591843 chr7:43591841 synonymous SNV . 0 19 hm5C_associated_SNPs_21494 0 0 0 0 2 HECW1 chr7:43591935 5'GT 43591935 Upstream 95bp
chr15 25220524 25220524 1 + A G COAD 25220529 + 25220509 25220549 41 TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGA TTGGCAAGAGTAGCAGGATGCTGCAGCACATTGACTATAGA < 41bp 1 0.641117452562414 1 0.520973026752472 experiment 0.717765094875172 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25220529 chr15:25220524 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_21495 0 0 0 2 1 SNRPN chr15:25220505 3'AG 25220505 Downstream 20bp
chr7 158734631 158734631 1 + G A COAD 158734618 + 158734598 158734638 41 CTTTCTTCCTGGTCATAGGCCGGCTGTTCGGACGGAAGCAT CTTTCTTCCTGGTCATAGGCCGGCTGTTCGGACAGAAGCAT < 41bp 1 0.443266236086719 1 0.43527352809906 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR60 ENSG00000126870 CDS Human protein_coding chr7:158734618 chr7:158734631 nonsynonymous SNV 0.026 4 34 hm5C_associated_SNPs_21498 0 0 1 0 1 WDR60 chr7:158734616 3'AG 158734616 Downstream 16bp
chr7 72409179 72409179 1 + C A COAD 72409185 + 72409165 72409205 41 TCTAGCCCAGCCTCCTCCCGCTCCCAGACACCGGAGAGGCC TCTAGCCCAGCCTCATCCCGCTCCCAGACACCGGAGAGGCC < 41bp 1 0.0965145675504916 1 0.153634399175644 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POM121 ENSG00000196313 CDS Human protein_coding chr7:72409185 chr7:72409179 synonymous SNV . 0 15 hm5C_associated_SNPs_21499 0 0 1 0 2 POM121 chr7:72409129 3'AG 72409129 Downstream 51bp
chr7 72409179 72409179 1 + C A COAD 72409185 + 72409165 72409205 41 TCTAGCCCAGCCTCCTCCCGCTCCCAGACACCGGAGAGGCC TCTAGCCCAGCCTCATCCCGCTCCCAGACACCGGAGAGGCC < 41bp 1 0.0965145675504916 1 0.153634399175644 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POM121 ENSG00000196313 CDS Human protein_coding chr7:72409185 chr7:72409179 synonymous SNV . 0 15 hm5C_associated_SNPs_21499 0 0 1 0 2 POM121 chr7:72409220 5'GT 72409220 Upstream 42bp
chr18 8819069 8819069 1 + G A COAD 8819061 + 8819041 8819081 41 CCAGGGAAGCCTCCGCATGCCCCGTCCAGTGGCCATGTGGC CCAGGGAAGCCTCCGCATGCCCCGTCCAATGGCCATGTGGC < 41bp 1 0.172999013907055 1 0.0809758901596069 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8819061 chr18:8819069 nonsynonymous SNV 0.000 0 29 hm5C_associated_SNPs_21500 0 0 0 0 1 MTCL1 chr18:8819045 3'AG 8819045 Downstream 25bp
chr7 43591835 43591835 1 + G A COAD 43591843 + 43591823 43591863 41 TGTAGACTCGAGGCTGGTGTCCGTGTTTGATGCCAGGGAGC TGTAGACTCGAGACTGGTGTCCGTGTTTGATGCCAGGGAGC < 41bp 1 0.133698255358718 1 0.195550322532654 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43591843 chr7:43591835 synonymous SNV . 0 13 hm5C_associated_SNPs_21501 0 0 0 0 1 HECW1 chr7:43591821 3'AG 43591821 Downstream 15bp
chr12 6979509 6979509 1 + A G COAD 6979504 + 6979484 6979524 41 CTTCCTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGG CTTCCTTGTGGGTGGTGCTTCCCTCGAGCCCGAATTCGTGG < 41bp 1 0.177062532904147 1 0.0461088120937347 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979504 chr12:6979509 nonsynonymous SNV 0.996 2 26 hm5C_associated_SNPs_21505 0 0 1 0 1 TPI1 chr12:6979429 3'AG 6979429 Downstream 81bp
chr12 6979509 6979509 1 + A G COAD 6979508 + 6979488 6979528 41 CTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGGACAT CTTGTGGGTGGTGCTTCCCTCGAGCCCGAATTCGTGGACAT < 41bp 1 0.657611457973428 1 0.798855781555176 experiment 0.684777084053145 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979508 chr12:6979509 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_21506 0 0 1 0 1 TPI1 chr12:6979429 3'AG 6979429 Downstream 81bp
chr1 45268976 45268976 1 + G A COAD 45268980 + 45268960 45269000 41 CCCTATCAGCAGCTGCGTGACAGTCCCAGACCTGACACCCC CCCTATCAGCAGCTGCATGACAGTCCCAGACCTGACACCCC < 41bp 1 0.240409608160871 1 0.422540217638016 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45268980 chr1:45268976 nonsynonymous SNV 0.959 0 17 hm5C_associated_SNPs_21507 0 0 0 0 1 PLK3 chr1:45268940 3'AG 45268940 Downstream 37bp
chr17 33324842 33324842 1 + A G COAD 33324843 + 33324823 33324863 41 CTCAGAAATGAAGCGAGTCACAGTAAGTGAAGACCCTATGC CTCAGAAATGAAGCGAGTCGCAGTAAGTGAAGACCCTATGC < 41bp 1 0.619106891285323 1 0.683338522911072 experiment 0.761786217429354 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33324843 chr17:33324842 nonsynonymous SNV 0.931 0 20 hm5C_associated_SNPs_21509 0 0 1 0 2 LIG3 chr17:33324757 3'AG 33324757 Downstream 86bp
chr17 33324842 33324842 1 + A G COAD 33324843 + 33324823 33324863 41 CTCAGAAATGAAGCGAGTCACAGTAAGTGAAGACCCTATGC CTCAGAAATGAAGCGAGTCGCAGTAAGTGAAGACCCTATGC < 41bp 1 0.619106891285323 1 0.683338522911072 experiment 0.761786217429354 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33324843 chr17:33324842 nonsynonymous SNV 0.931 0 20 hm5C_associated_SNPs_21509 0 0 1 0 2 LIG3 chr17:33324844 5'GT 33324844 Upstream 3bp
chr8 100182331 100182331 1 + C A COAD 100182330 + 100182310 100182350 41 GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAGC GATCTTACTGCTTACCTGTACAAGTTATTCCCTCTTTCAGC < 41bp 1 0.163975989043413 1 0.155690491199493 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100182330 chr8:100182331 nonsynonymous SNV 0.988 2 22 hm5C_associated_SNPs_21510 0 0 1 0 2 VPS13B chr8:100182267 3'AG 100182267 Downstream 65bp
chr8 100182331 100182331 1 + C A COAD 100182330 + 100182310 100182350 41 GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAGC GATCTTACTGCTTACCTGTACAAGTTATTCCCTCTTTCAGC < 41bp 1 0.163975989043413 1 0.155690491199493 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100182330 chr8:100182331 nonsynonymous SNV 0.988 2 22 hm5C_associated_SNPs_21510 0 0 1 0 2 VPS13B chr8:100182391 5'GT 100182391 Upstream 61bp
chr1 201174412 201174412 1 + T C COAD 201174417 + 201174397 201174437 41 GGTGAGGGGGGCACGTTTCTCAGACATGGGCCCCTATTCGC GGTGAGGGGGGCACGCTTCTCAGACATGGGCCCCTATTCGC < 41bp 1 0.685410039691526 1 0.751786708831787 experiment 0.629179920616949 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201174417 chr1:201174412 synonymous SNV . 0 16 hm5C_associated_SNPs_21512 0 0 0 0 1 IGFN1 chr1:201174482 5'GT 201174482 Upstream 71bp
chr19 39950201 39950201 1 + A T COAD 39950216 + 39950196 39950236 41 TAGGGATCCCAATCTGTGGACTGTCAAATGTAAGGTATGTG TAGGGTTCCCAATCTGTGGACTGTCAAATGTAAGGTATGTG < 41bp 1 0.0314546931305208 1 0.0857913196086884 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950216 chr19:39950201 nonsynonymous SNV 0.965 4 6 hm5C_associated_SNPs_21513 0 0 1 0 2 SUPT5H chr19:39950199 3'AG 39950199 Downstream 3bp
chr19 39950201 39950201 1 + A T COAD 39950216 + 39950196 39950236 41 TAGGGATCCCAATCTGTGGACTGTCAAATGTAAGGTATGTG TAGGGTTCCCAATCTGTGGACTGTCAAATGTAAGGTATGTG < 41bp 1 0.0314546931305208 1 0.0857913196086884 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950216 chr19:39950201 nonsynonymous SNV 0.965 4 6 hm5C_associated_SNPs_21513 0 0 1 0 2 SUPT5H chr19:39950229 5'GT 39950229 Upstream 29bp
chr19 39950201 39950201 1 + A T COAD 39950220 + 39950200 39950240 41 GATCCCAATCTGTGGACTGTCAAATGTAAGGTATGTGCTCT GTTCCCAATCTGTGGACTGTCAAATGTAAGGTATGTGCTCT < 41bp 1 0.43282125474412 1 0.820258498191833 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950220 chr19:39950201 nonsynonymous SNV 0.965 4 2 hm5C_associated_SNPs_21514 0 0 1 0 2 SUPT5H chr19:39950199 3'AG 39950199 Downstream 3bp
chr19 39950201 39950201 1 + A T COAD 39950220 + 39950200 39950240 41 GATCCCAATCTGTGGACTGTCAAATGTAAGGTATGTGCTCT GTTCCCAATCTGTGGACTGTCAAATGTAAGGTATGTGCTCT < 41bp 1 0.43282125474412 1 0.820258498191833 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950220 chr19:39950201 nonsynonymous SNV 0.965 4 2 hm5C_associated_SNPs_21514 0 0 1 0 2 SUPT5H chr19:39950229 5'GT 39950229 Upstream 29bp
chr22 29695770 29695770 1 + G C COAD 29695781 + 29695761 29695801 41 CCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG CCCTGGGGGCCCCCCTGGACCTTTGATGGAACAGATGGGAG < 41bp 1 0.405065926262223 1 0.147102952003479 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695781 chr22:29695770 synonymous SNV . 0 10 hm5C_associated_SNPs_21515 0 0 1 0 1 EWSR1 chr22:29695841 5'GT 29695841 Upstream 72bp
chr6 84629139 84629139 1 + C A COAD 84629154 + 84629134 84629174 41 AGACTCTTTAGTCACCATTGCCATATATACTAAACAGAAGG AGACTATTTAGTCACCATTGCCATATATACTAAACAGAAGG < 41bp 1 0.104734648244769 1 0.509474754333496 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYB5R4 ENSG00000065615 CDS Human protein_coding chr6:84629154 chr6:84629139 nonsynonymous SNV 0.962 1 6 hm5C_associated_SNPs_21518 0 0 1 0 2 CYB5R4 chr6:84629116 3'AG 84629116 Downstream 24bp
chr6 84629139 84629139 1 + C A COAD 84629154 + 84629134 84629174 41 AGACTCTTTAGTCACCATTGCCATATATACTAAACAGAAGG AGACTATTTAGTCACCATTGCCATATATACTAAACAGAAGG < 41bp 1 0.104734648244769 1 0.509474754333496 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYB5R4 ENSG00000065615 CDS Human protein_coding chr6:84629154 chr6:84629139 nonsynonymous SNV 0.962 1 6 hm5C_associated_SNPs_21518 0 0 1 0 2 CYB5R4 chr6:84629173 5'GT 84629173 Upstream 35bp
chr14 102502958 102502958 1 + C T COAD 102502965 + 102502945 102502985 41 GTGCACTGAGATTCGGTAACCCCCTTCTGGTCCAGGTTGGT GTGCACTGAGATTTGGTAACCCCCTTCTGGTCCAGGTTGGT < 41bp 1 0.0362114391661291 1 0.0564897656440735 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102502965 chr14:102502958 synonymous SNV . 0 14 hm5C_associated_SNPs_21519 1 0 1 0 1 DYNC1H1 chr14:102502979 5'GT 102502979 Upstream 22bp
chr14 102502958 102502958 1 + C T COAD 102502967 + 102502947 102502987 41 GCACTGAGATTCGGTAACCCCCTTCTGGTCCAGGTTGGTGT GCACTGAGATTTGGTAACCCCCTTCTGGTCCAGGTTGGTGT < 41bp 1 0.00915632850289631 1 0.0286121666431427 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102502967 chr14:102502958 synonymous SNV . 0 12 hm5C_associated_SNPs_21520 1 0 1 0 1 DYNC1H1 chr14:102502979 5'GT 102502979 Upstream 22bp
chr6 158900912 158900912 1 + G A COAD 158900920 + 158900900 158900940 41 CAGCAGGCCATCGCCAGCACCTTGCGTGAGGACAAGGACGT CAGCAGGCCATCACCAGCACCTTGCGTGAGGACAAGGACGT < 41bp 1 0.139918051620846 1 0.125069707632065 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TULP4 ENSG00000130338 CDS Human protein_coding chr6:158900920 chr6:158900912 nonsynonymous SNV 0.995 2 13 hm5C_associated_SNPs_21522 0 0 1 0 1 TULP4 chr6:158901007 5'GT 158901007 Upstream 96bp
chr3 127325561 127325561 1 + C T COAD 127325576 + 127325556 127325596 41 AATTTCGTCCTGGGTCCTTTCTGCCAGTCCCAGAACCAGGA AATTTTGTCCTGGGTCCTTTCTGCCAGTCCCAGAACCAGGA < 41bp 1 0.518765879867231 1 0.661551833152771 experiment 0.962468240265538 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127325576 chr3:127325561 synonymous SNV . 0 6 hm5C_associated_SNPs_21524 0 0 1 0 1 MCM2 chr3:127325660 5'GT 127325660 Upstream 100bp
chr1 156351627 156351627 1 + G A COAD 156351618 + 156351598 156351638 41 TCCACATCCAAAATGCAGCGCTGGCTGGAGGGGTTGTGGTG TCCACATCCAAAATGCAGCGCTGGCTGGAAGGGTTGTGGTG < 41bp 1 0.377702213248573 1 0.103717744350433 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHBG ENSG00000132677 CDS Human protein_coding chr1:156351618 chr1:156351627 nonsynonymous SNV 0.905 2 30 hm5C_associated_SNPs_21525 0 0 0 0 2 RHBG chr1:156351597 3'AG 156351597 Downstream 31bp
chr1 156351627 156351627 1 + G A COAD 156351618 + 156351598 156351638 41 TCCACATCCAAAATGCAGCGCTGGCTGGAGGGGTTGTGGTG TCCACATCCAAAATGCAGCGCTGGCTGGAAGGGTTGTGGTG < 41bp 1 0.377702213248573 1 0.103717744350433 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHBG ENSG00000132677 CDS Human protein_coding chr1:156351618 chr1:156351627 nonsynonymous SNV 0.905 2 30 hm5C_associated_SNPs_21525 0 0 0 0 2 RHBG chr1:156351718 5'GT 156351718 Upstream 92bp
chr3 111705829 111705829 1 + C T COAD 111705815 + 111705795 111705835 41 TGCTTCATGCTGCAATTGCACGACCAGAGAAGGTCGTGGCT TGCTTCATGCTGCAATTGCACGACCAGAGAAGGTTGTGGCT < 41bp 1 0.498955349096243 1 0.128005564212799 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111705815 chr3:111705829 synonymous SNV . 0 35 hm5C_associated_SNPs_21526 0 0 0 0 2 ABHD10 chr3:111705761 3'AG 111705761 Downstream 69bp
chr3 111705829 111705829 1 + C T COAD 111705815 + 111705795 111705835 41 TGCTTCATGCTGCAATTGCACGACCAGAGAAGGTCGTGGCT TGCTTCATGCTGCAATTGCACGACCAGAGAAGGTTGTGGCT < 41bp 1 0.498955349096243 1 0.128005564212799 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111705815 chr3:111705829 synonymous SNV . 0 35 hm5C_associated_SNPs_21526 0 0 0 0 2 ABHD10 chr3:111705898 5'GT 111705898 Upstream 70bp
chr2 233681635 233681635 1 + C T COAD 233681615 + 233681595 233681635 41 AAGAGAGGCAGAAATGAGGGCAAAACGGGAAGAGGAAGAGC AAGAGAGGCAGAAATGAGGGCAAAACGGGAAGAGGAAGAGT < 41bp 1 0.238218319615128 1 0.418687343597412 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233681615 chr2:233681635 stopgain 1.000 1 41 hm5C_associated_SNPs_21527 0 0 1 0 1 GIGYF2 chr2:233681581 3'AG 233681581 Downstream 55bp
chr2 228162509 228162509 1 + C T COAD 228162527 + 228162507 228162547 41 GTCTGCCCGGTGCAATTATCCCTGGCCAGACAGGAAATCGT GTTTGCCCGGTGCAATTATCCCTGGCCAGACAGGAAATCGT < 41bp 1 0.17641490345086 1 0.142980962991714 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228162527 chr2:228162509 synonymous SNV . 0 3 hm5C_associated_SNPs_21528 0 0 0 0 1 COL4A3 chr2:228162575 5'GT 228162575 Upstream 67bp
chr1 161761932 161761932 1 + A C COAD 161761929 + 161761909 161761949 41 TCCAGAAAATGGACTGACTCCAAAGAAAAAAATTCAGGTGA TCCAGAAAATGGACTGACTCCAACGAAAAAAATTCAGGTGA < 41bp 1 0.492026231367015 1 0.670128166675568 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161761929 chr1:161761932 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_21529 0 0 1 0 1 ATF6 chr1:161761914 3'AG 161761914 Downstream 19bp
chr3 13672917 13672917 1 + G A COAD 13672900 + 13672880 13672920 41 TCAACGTGCCAGGGAGCTACCAGTGTGCATGCCCTGAGCAG TCAACGTGCCAGGGAGCTACCAGTGTGCATGCCCTGAACAG < 41bp 1 0.609269067951223 1 0.456299781799316 experiment 0.781461864097554 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13672900 chr3:13672917 synonymous SNV . 0 38 hm5C_associated_SNPs_21530 0 0 0 0 1 FBLN2 chr3:13672829 3'AG 13672829 Downstream 89bp
chr4 170616794 170616794 1 + C A COAD 170616800 + 170616780 170616820 41 AGCTGCAGGGGTTTCTGTAGCTTTTGGTGCACCAATTGGAG AGCTGCAGGGGTTTATGTAGCTTTTGGTGCACCAATTGGAG < 41bp 1 0.129121638119174 1 0.0768114328384399 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLCN3 ENSG00000109572 CDS Human protein_coding chr4:170616800 chr4:170616794 nonsynonymous SNV 0.997 5 15 hm5C_associated_SNPs_21531 0 0 1 0 2 CLCN3 chr4:170616763 3'AG 170616763 Downstream 32bp
chr4 170616794 170616794 1 + C A COAD 170616800 + 170616780 170616820 41 AGCTGCAGGGGTTTCTGTAGCTTTTGGTGCACCAATTGGAG AGCTGCAGGGGTTTATGTAGCTTTTGGTGCACCAATTGGAG < 41bp 1 0.129121638119174 1 0.0768114328384399 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLCN3 ENSG00000109572 CDS Human protein_coding chr4:170616800 chr4:170616794 nonsynonymous SNV 0.997 5 15 hm5C_associated_SNPs_21531 0 0 1 0 2 CLCN3 chr4:170616843 5'GT 170616843 Upstream 50bp
chr7 74146987 74146987 1 + C T COAD 74146969 + 74146949 74146989 41 CTCGCCTGGAGAGGATATTACTTGCAAAGGAAAGGATTCGT CTCGCCTGGAGAGGATATTACTTGCAAAGGAAAGGATTTGT < 41bp 1 0.195806489605536 1 0.0379040837287903 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2I ENSG00000077809 CDS Human other chr7:74146969 chr7:74146987 nonsynonymous SNV 0.997 2 39 hm5C_associated_SNPs_21533 0 0 0 0 1 GTF2I chr7:74147003 5'GT 74147003 Upstream 17bp
chr10 93695422 93695422 1 + G A COAD 93695421 + 93695401 93695441 41 TTTGTTATTTCAGGCTAGATCGCCTTTTTATTTTACTGGAT TTTGTTATTTCAGGCTAGATCACCTTTTTATTTTACTGGAT < 41bp 1 0.400826848188061 1 0.460180133581161 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93695421 chr10:93695422 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_21535 0 0 1 0 1 BTAF1 chr10:93695414 3'AG 93695414 Downstream 9bp
chr22 39125532 39125532 1 + G A COAD 39125541 + 39125521 39125561 41 ATGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGA ATGCAGTCGACAAAAAAGGGCCCCCTGACGAAACGAGACGA < 41bp 1 0.0363771630558176 1 0.130174160003662 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125541 chr22:39125532 synonymous SNV . 0 12 hm5C_associated_SNPs_21552 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 66bp
chr22 39125532 39125532 1 + G A COAD 39125542 + 39125522 39125562 41 TGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAG TGCAGTCGACAAAAAAGGGCCCCCTGACGAAACGAGACGAG < 41bp 1 0.0503607832783514 1 0.227067023515701 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125542 chr22:39125532 synonymous SNV . 0 11 hm5C_associated_SNPs_21553 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 66bp
chr22 39125532 39125532 1 + G A COAD 39125543 + 39125523 39125563 41 GCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGG GCAGTCGACAAAAAAGGGCCCCCTGACGAAACGAGACGAGG < 41bp 1 0.0207330194252621 1 0.135247617959976 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125543 chr22:39125532 synonymous SNV . 0 10 hm5C_associated_SNPs_21554 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 66bp
chr22 39125532 39125532 1 + G A COAD 39125544 + 39125524 39125564 41 CAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGG CAGTCGACAAAAAAGGGCCCCCTGACGAAACGAGACGAGGG < 41bp 1 0.0648919872149775 1 0.199277728796005 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125544 chr22:39125532 synonymous SNV . 0 9 hm5C_associated_SNPs_21555 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 66bp
chr22 39125532 39125532 1 + G A COAD 39125545 + 39125525 39125565 41 AGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGGG AGTCGACAAAAAAGGGCCCCCTGACGAAACGAGACGAGGGG < 41bp 1 0.146438003005078 1 0.358564674854279 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125545 chr22:39125532 synonymous SNV . 0 8 hm5C_associated_SNPs_21556 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 66bp
chr2 136511744 136511744 1 + T C COAD 136511732 + 136511712 136511752 41 TTCATTAAACTGTACAGATCCTGTAGTGTGTGTTCCATCCA TTCATTAAACTGTACAGATCCTGTAGTGTGTGCTCCATCCA < 41bp 1 0.55190152932167 1 0.100958079099655 experiment 0.89619694135666 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBXN4 ENSG00000144224 CDS Human protein_coding chr2:136511732 chr2:136511744 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_21560 0 0 1 0 1 UBXN4 chr2:136511729 3'AG 136511729 Downstream 16bp
chr2 97007521 97007521 1 + A C COAD 97007527 + 97007507 97007547 41 CCCAGTCCTCGAAGACTTTCCTCAGAATGACGATGAGAAGG CCCAGTCCTCGAAGCCTTTCCTCAGAATGACGATGAGAAGG < 41bp 1 0.597947410156787 1 0.660038471221924 experiment 0.804105179686426 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCAPH ENSG00000121152 CDS Human protein_coding chr2:97007527 chr2:97007521 nonsynonymous SNV 0.999 1 15 hm5C_associated_SNPs_21561 0 0 1 0 1 NCAPH chr2:97007452 3'AG 97007452 Downstream 70bp
chr13 33349185 33349185 1 + C T COAD 33349182 + 33349162 33349202 41 GGCGAAGTGCTAAAAGGGAACGGCGATGAACAAATGTAATT GGCGAAGTGCTAAAAGGGAACGGTGATGAACAAATGTAATT < 41bp 1 0.273121611548839 1 0.386828541755676 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDS5B ENSG00000083642 CDS Human protein_coding chr13:33349182 chr13:33349185 stopgain 0.994 0 24 hm5C_associated_SNPs_21562 0 0 0 0 1 PDS5B chr13:33349155 3'AG 33349155 Downstream 31bp
chr12 13232899 13232899 1 + C T COAD 13232896 + 13232876 13232916 41 CCAAAATTGGCCGTGGGGAGCTGCGAAGATTTCTCTCTAGG CCAAAATTGGCCGTGGGGAGCTGTGAAGATTTCTCTCTAGG < 41bp 1 0.314202467918896 1 0.110538274049759 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234B ENSG00000084444 CDS Human protein_coding chr12:13232896 chr12:13232899 stopgain 1.000 0 24 hm5C_associated_SNPs_21563 0 0 1 1 1 FAM234B chr12:13232943 5'GT 13232943 Upstream 45bp
chr1 100480953 100480953 1 + A G COAD 100480954 + 100480934 100480974 41 TCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTC TCAGGGATATAACCGACTGGCCTGGATAGTAGTTGTTCTTC < 41bp 1 0.233606102241822 1 0.0483535528182983 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC35A3 ENSG00000117620 CDS Human protein_coding chr1:100480954 chr1:100480953 nonsynonymous SNV 0.997 1 20 hm5C_associated_SNPs_21565 0 0 1 0 2 SLC35A3 chr1:100480858 3'AG 100480858 Downstream 96bp
chr1 100480953 100480953 1 + A G COAD 100480954 + 100480934 100480974 41 TCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTC TCAGGGATATAACCGACTGGCCTGGATAGTAGTTGTTCTTC < 41bp 1 0.233606102241822 1 0.0483535528182983 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC35A3 ENSG00000117620 CDS Human protein_coding chr1:100480954 chr1:100480953 nonsynonymous SNV 0.997 1 20 hm5C_associated_SNPs_21565 0 0 1 0 2 SLC35A3 chr1:100480976 5'GT 100480976 Upstream 24bp
chr9 132630298 132630298 1 + C T COAD 132630317 + 132630297 132630337 41 TCCTTCGCTGCCTGATGGACCAGCTGCACGAGGAGCTCAAG TTCTTCGCTGCCTGATGGACCAGCTGCACGAGGAGCTCAAG < 41bp 1 0.373384221366782 1 0.548511803150177 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP20 ENSG00000136878 CDS Human protein_coding chr9:132630317 chr9:132630298 synonymous SNV . 0 2 hm5C_associated_SNPs_21566 0 0 1 0 1 USP20 chr9:132630284 3'AG 132630284 Downstream 15bp
chr1 35879610 35879610 1 + C A COAD 35879615 + 35879595 35879635 41 TAGATAACATTTTTACTGAGCCCTATTCCAGATTTATGATT TAGATAACATTTTTAATGAGCCCTATTCCAGATTTATGATT < 41bp 1 0.0857613876704323 1 0.0244598686695099 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35879615 chr1:35879610 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_21568 0 0 1 0 2 ZMYM4 chr1:35879573 3'AG 35879573 Downstream 38bp
chr1 35879610 35879610 1 + C A COAD 35879615 + 35879595 35879635 41 TAGATAACATTTTTACTGAGCCCTATTCCAGATTTATGATT TAGATAACATTTTTAATGAGCCCTATTCCAGATTTATGATT < 41bp 1 0.0857613876704323 1 0.0244598686695099 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35879615 chr1:35879610 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_21568 0 0 1 0 2 ZMYM4 chr1:35879684 5'GT 35879684 Upstream 75bp
chr1 35879610 35879610 1 + C A COAD 35879623 + 35879603 35879643 41 ATTTTTACTGAGCCCTATTCCAGATTTATGATTGAACTTAC ATTTTTAATGAGCCCTATTCCAGATTTATGATTGAACTTAC < 41bp 1 0.377902347243603 1 0.531129539012909 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35879623 chr1:35879610 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_21569 0 0 1 0 2 ZMYM4 chr1:35879573 3'AG 35879573 Downstream 38bp
chr1 35879610 35879610 1 + C A COAD 35879623 + 35879603 35879643 41 ATTTTTACTGAGCCCTATTCCAGATTTATGATTGAACTTAC ATTTTTAATGAGCCCTATTCCAGATTTATGATTGAACTTAC < 41bp 1 0.377902347243603 1 0.531129539012909 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35879623 chr1:35879610 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_21569 0 0 1 0 2 ZMYM4 chr1:35879684 5'GT 35879684 Upstream 75bp
chr3 123348391 123348391 1 + C T COAD 123348379 + 123348359 123348399 41 GGCATCGTCGGAGATCTCATCGAATGCCTCGTCGTCGAAGT GGCATCGTCGGAGATCTCATCGAATGCCTCGTTGTCGAAGT < 41bp 1 0.550623735305411 1 0.477219641208649 experiment 0.898752529389178 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYLK ENSG00000065534 CDS Human protein_coding chr3:123348379 chr3:123348391 nonsynonymous SNV 0.953 3 33 hm5C_associated_SNPs_21570 0 0 0 0 1 MYLK chr3:123348341 3'AG 123348341 Downstream 51bp
chr2 220346370 220346370 1 + G A COAD 220346365 + 220346345 220346385 41 CTCATTCATTCACAGGAGACCTACCGCAGAAGAGACCCTAG CTCATTCATTCACAGGAGACCTACCACAGAAGAGACCCTAG < 41bp 1 0.0230368045249359 1 0.0872533023357391 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220346365 chr2:220346370 nonsynonymous SNV 0.873 0 26 hm5C_associated_SNPs_21571 0 0 0 0 2 SPEG chr2:220346360 3'AG 220346360 Downstream 11bp
chr2 220346370 220346370 1 + G A COAD 220346365 + 220346345 220346385 41 CTCATTCATTCACAGGAGACCTACCGCAGAAGAGACCCTAG CTCATTCATTCACAGGAGACCTACCACAGAAGAGACCCTAG < 41bp 1 0.0230368045249359 1 0.0872533023357391 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220346365 chr2:220346370 nonsynonymous SNV 0.873 0 26 hm5C_associated_SNPs_21571 0 0 0 0 2 SPEG chr2:220346402 5'GT 220346402 Upstream 33bp
chr7 157000225 157000225 1 + G A COAD 157000240 + 157000220 157000260 41 ATAACGAATTCTTCGGTGATCCCATAGAAGGTAAGGATTTT ATAACAAATTCTTCGGTGATCCCATAGAAGGTAAGGATTTT < 41bp 1 0.0411053864421985 1 0.155094742774963 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE3C ENSG00000009335 CDS Human protein_coding chr7:157000240 chr7:157000225 nonsynonymous SNV 0.890 4 6 hm5C_associated_SNPs_21572 0 0 1 0 1 UBE3C chr7:157000249 5'GT 157000249 Upstream 25bp
chr11 65418133 65418133 1 + C T COAD 65418138 + 65418118 65418158 41 GAGAGTGCAGCCACACGCCTCCTCCTGGCCTCCAAGCAGCT GAGAGTGCAGCCACATGCCTCCTCCTGGCCTCCAAGCAGCT < 41bp 1 0.017562042734096 1 0.11321234703064 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIPA1 ENSG00000213445 CDS Human protein_coding chr11:65418138 chr11:65418133 nonsynonymous SNV 0.961 4 16 hm5C_associated_SNPs_21574 0 0 0 0 1 SIPA1 chr11:65418040 3'AG 65418040 Downstream 94bp
chr11 65418133 65418133 1 + C T COAD 65418139 + 65418119 65418159 41 AGAGTGCAGCCACACGCCTCCTCCTGGCCTCCAAGCAGCTG AGAGTGCAGCCACATGCCTCCTCCTGGCCTCCAAGCAGCTG < 41bp 1 0.256587386408365 1 0.11897549033165 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIPA1 ENSG00000213445 CDS Human protein_coding chr11:65418139 chr11:65418133 nonsynonymous SNV 0.961 4 15 hm5C_associated_SNPs_21575 0 0 0 0 1 SIPA1 chr11:65418040 3'AG 65418040 Downstream 94bp
chr12 53454467 53454467 1 + G A COAD 53454477 + 53454457 53454497 41 AGCACCCGGCGACAGGACACCAGGTCCCCCACCTCAGCGCC AGCACCCGGCAACAGGACACCAGGTCCCCCACCTCAGCGCC < 41bp 1 0.548334470188495 1 0.753087222576141 experiment 0.90333105962301 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TNS2 ENSG00000111077 CDS Human protein_coding chr12:53454477 chr12:53454467 nonsynonymous SNV 0.960 1 11 hm5C_associated_SNPs_21576 0 0 0 0 1 TNS2 chr12:53454459 3'AG 53454459 Downstream 9bp
chr19 4475344 4475344 1 + G A COAD 4475343 + 4475323 4475363 41 ATCTTTTTCTTTGGCACACACGAAACGTAAGTGTCCCCTTC ATCTTTTTCTTTGGCACACACAAAACGTAAGTGTCCCCTTC < 41bp 1 0.480809858789227 1 0.384396404027939 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4475343 chr19:4475344 nonsynonymous SNV 0.986 3 22 hm5C_associated_SNPs_21577 0 0 1 0 2 HDGFL2 chr19:4475272 3'AG 4475272 Downstream 73bp
chr19 4475344 4475344 1 + G A COAD 4475343 + 4475323 4475363 41 ATCTTTTTCTTTGGCACACACGAAACGTAAGTGTCCCCTTC ATCTTTTTCTTTGGCACACACAAAACGTAAGTGTCCCCTTC < 41bp 1 0.480809858789227 1 0.384396404027939 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4475343 chr19:4475344 nonsynonymous SNV 0.986 3 22 hm5C_associated_SNPs_21577 0 0 1 0 2 HDGFL2 chr19:4475348 5'GT 4475348 Upstream 5bp
chr19 4475344 4475344 1 + G A COAD 4475348 + 4475328 4475368 41 TTTCTTTGGCACACACGAAACGTAAGTGTCCCCTTCTGGGG TTTCTTTGGCACACACAAAACGTAAGTGTCCCCTTCTGGGG < 41bp 1 0.49662579349439 1 0.179060399532318 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4475348 chr19:4475344 nonsynonymous SNV 0.986 3 17 hm5C_associated_SNPs_21578 0 0 1 0 2 HDGFL2 chr19:4475272 3'AG 4475272 Downstream 73bp
chr19 4475344 4475344 1 + G A COAD 4475348 + 4475328 4475368 41 TTTCTTTGGCACACACGAAACGTAAGTGTCCCCTTCTGGGG TTTCTTTGGCACACACAAAACGTAAGTGTCCCCTTCTGGGG < 41bp 1 0.49662579349439 1 0.179060399532318 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4475348 chr19:4475344 nonsynonymous SNV 0.986 3 17 hm5C_associated_SNPs_21578 0 0 1 0 2 HDGFL2 chr19:4475348 5'GT 4475348 Upstream 5bp
chr7 114655785 114655785 1 + C T COAD 114655776 + 114655756 114655796 41 TGTATCCTGGCTTGCTTGTTCTGCGAATTCCTGACCCTTTG TGTATCCTGGCTTGCTTGTTCTGCGAATTTCTGACCCTTTG < 41bp 1 0.743915385159424 1 0.339720547199249 experiment 0.512169229681152 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MDFIC ENSG00000135272 CDS Human protein_coding chr7:114655776 chr7:114655785 synonymous SNV . 0 30 hm5C_associated_SNPs_21579 0 0 1 0 1 MDFIC chr7:114655742 3'AG 114655742 Downstream 44bp
chr12 62938732 62938732 1 + T C COAD 62938730 + 62938710 62938750 41 ATGGGGAGCAGAAGCTTTAACTTCTCTTATTAAAGCAGGAT ATGGGGAGCAGAAGCTTTAACTCCTCTTATTAAAGCAGGAT < 41bp 1 0.418214214331502 1 0.480733633041382 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62938730 chr12:62938732 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_21580 0 0 1 0 2 MON2 chr12:62938678 3'AG 62938678 Downstream 55bp
chr12 62938732 62938732 1 + T C COAD 62938730 + 62938710 62938750 41 ATGGGGAGCAGAAGCTTTAACTTCTCTTATTAAAGCAGGAT ATGGGGAGCAGAAGCTTTAACTCCTCTTATTAAAGCAGGAT < 41bp 1 0.418214214331502 1 0.480733633041382 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62938730 chr12:62938732 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_21580 0 0 1 0 2 MON2 chr12:62938788 5'GT 62938788 Upstream 57bp
chr10 114918433 114918433 1 + C T COAD 114918428 + 114918408 114918448 41 TTTGTTCTTTTTTTTCAGAACACAGCGAATGTTTCCTAAAT TTTGTTCTTTTTTTTCAGAACACAGTGAATGTTTCCTAAAT < 41bp 1 0.331625231175118 1 0.167408108711243 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114918428 chr10:114918433 synonymous SNV . 0 26 hm5C_associated_SNPs_21581 0 0 1 0 2 TCF7L2 chr10:114918426 3'AG 114918426 Downstream 8bp
chr10 114918433 114918433 1 + C T COAD 114918428 + 114918408 114918448 41 TTTGTTCTTTTTTTTCAGAACACAGCGAATGTTTCCTAAAT TTTGTTCTTTTTTTTCAGAACACAGTGAATGTTTCCTAAAT < 41bp 1 0.331625231175118 1 0.167408108711243 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114918428 chr10:114918433 synonymous SNV . 0 26 hm5C_associated_SNPs_21581 0 0 1 0 2 TCF7L2 chr10:114918476 5'GT 114918476 Upstream 44bp
chr5 56526785 56526785 1 + G A COAD 56526784 + 56526764 56526804 41 GCTTTGATTCTGCTATTGGGCGTCCTAATGGAGGTAAAATT GCTTTGATTCTGCTATTGGGCATCCTAATGGAGGTAAAATT < 41bp 1 0.173895391090825 1 0.0663838982582092 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56526784 chr5:56526785 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_21583 0 0 1 1 1 GPBP1 chr5:56526796 5'GT 56526796 Upstream 12bp
chr10 5963497 5963497 1 + G A COAD 5963508 + 5963488 5963528 41 CGGGTGACGGAAGGGGAATTCCCTTCAAGGATACATTTGAT CGGGTGACGAAAGGGGAATTCCCTTCAAGGATACATTTGAT < 41bp 1 0.0854712638380611 1 0.229276478290558 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963508 chr10:5963497 nonsynonymous SNV 0.775 1 10 hm5C_associated_SNPs_21585 0 0 1 0 2 FBXO18 chr10:5963411 3'AG 5963411 Downstream 87bp
chr10 5963497 5963497 1 + G A COAD 5963508 + 5963488 5963528 41 CGGGTGACGGAAGGGGAATTCCCTTCAAGGATACATTTGAT CGGGTGACGAAAGGGGAATTCCCTTCAAGGATACATTTGAT < 41bp 1 0.0854712638380611 1 0.229276478290558 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963508 chr10:5963497 nonsynonymous SNV 0.775 1 10 hm5C_associated_SNPs_21585 0 0 1 0 2 FBXO18 chr10:5963532 5'GT 5963532 Upstream 36bp
chr10 5963497 5963497 1 + G A COAD 5963513 + 5963493 5963533 41 GACGGAAGGGGAATTCCCTTCAAGGATACATTTGATTGGGG GACGAAAGGGGAATTCCCTTCAAGGATACATTTGATTGGGG < 41bp 1 0.643172066618687 1 0.819425642490387 experiment 0.713655866762625 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963513 chr10:5963497 nonsynonymous SNV 0.775 1 5 hm5C_associated_SNPs_21586 0 0 1 0 2 FBXO18 chr10:5963411 3'AG 5963411 Downstream 87bp
chr10 5963497 5963497 1 + G A COAD 5963513 + 5963493 5963533 41 GACGGAAGGGGAATTCCCTTCAAGGATACATTTGATTGGGG GACGAAAGGGGAATTCCCTTCAAGGATACATTTGATTGGGG < 41bp 1 0.643172066618687 1 0.819425642490387 experiment 0.713655866762625 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963513 chr10:5963497 nonsynonymous SNV 0.775 1 5 hm5C_associated_SNPs_21586 0 0 1 0 2 FBXO18 chr10:5963532 5'GT 5963532 Upstream 36bp
chr1 173454561 173454561 1 + A G COAD 173454543 + 173454523 173454563 41 AGAGCCCACAGAAAAGTTACCTTTTCCCATCATCGATGATA AGAGCCCACAGAAAAGTTACCTTTTCCCATCATCGATGGTA < 41bp 1 0.0809931435682452 1 0.019411712884903 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173454543 chr1:173454561 nonsynonymous SNV 0.787 3 39 hm5C_associated_SNPs_21588 0 0 1 0 2 PRDX6 chr1:173454500 3'AG 173454500 Downstream 62bp
chr1 173454561 173454561 1 + A G COAD 173454543 + 173454523 173454563 41 AGAGCCCACAGAAAAGTTACCTTTTCCCATCATCGATGATA AGAGCCCACAGAAAAGTTACCTTTTCCCATCATCGATGGTA < 41bp 1 0.0809931435682452 1 0.019411712884903 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173454543 chr1:173454561 nonsynonymous SNV 0.787 3 39 hm5C_associated_SNPs_21588 0 0 1 0 2 PRDX6 chr1:173454646 5'GT 173454646 Upstream 86bp
chr8 23147914 23147914 1 + G A COAD 23147913 + 23147893 23147933 41 GTGGCAGAGGAGGAAGAGGACGAAGAGGAGGTGGAAGAGGA GTGGCAGAGGAGGAAGAGGACAAAGAGGAGGTGGAAGAGGA < 41bp 1 0.574448707368536 1 0.560296058654785 experiment 0.851102585262928 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control R3HCC1 ENSG00000104679 CDS Human protein_coding chr8:23147913 chr8:23147914 nonsynonymous SNV 0.021 0 22 hm5C_associated_SNPs_21590 0 0 1 0 1 R3HCC1 chr8:23147982 5'GT 23147982 Upstream 69bp
chrX 7171331 7171331 1 + G A COAD 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACAA < 41bp 1 0.304876698537281 1 0.0543593764305115 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171331 nonsynonymous SNV 0.990 5 40 hm5C_associated_SNPs_21591 0 0 0 0 1 STS chrX:7171237 3'AG 7171237 Downstream 95bp
chr7 73604164 73604164 1 + C T COAD 73604152 + 73604132 73604172 41 TATTTTCCCTTTATCATTAGCTGTTGGGCGATCGGTCACTT TATTTTCCCTTTATCATTAGCTGTTGGGCGATTGGTCACTT < 41bp 1 0.213310766100287 1 0.0206409990787506 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4H ENSG00000106682 CDS Human protein_coding chr7:73604152 chr7:73604164 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_21592 0 0 1 0 2 EIF4H chr7:73604152 3'AG 73604152 Downstream 13bp
chr7 73604164 73604164 1 + C T COAD 73604152 + 73604132 73604172 41 TATTTTCCCTTTATCATTAGCTGTTGGGCGATCGGTCACTT TATTTTCCCTTTATCATTAGCTGTTGGGCGATTGGTCACTT < 41bp 1 0.213310766100287 1 0.0206409990787506 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4H ENSG00000106682 CDS Human protein_coding chr7:73604152 chr7:73604164 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_21592 0 0 1 0 2 EIF4H chr7:73604248 5'GT 73604248 Upstream 85bp
chr19 5144306 5144306 1 + G T COAD 5144297 + 5144277 5144317 41 GTGTCCCTAGGCCAGGTGGTCATCACCAAGAACCGCAACGG GTGTCCCTAGGCCAGGTGGTCATCACCAATAACCGCAACGG < 41bp 1 0.338057643397298 1 0.170823186635971 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM4B ENSG00000127663 CDS Human protein_coding chr19:5144297 chr19:5144306 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_21593 0 0 1 0 1 KDM4B chr19:5144259 3'AG 5144259 Downstream 48bp
chr15 64410415 64410415 1 + C A COAD 64410406 + 64410386 64410426 41 TTCTCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCC TTCTCTTCCTCCTCAGGAAGCCACAAATTATTCGAAGCCCC < 41bp 1 0.229509661369647 1 0.254152685403824 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410406 chr15:64410415 nonsynonymous SNV 0.955 0 30 hm5C_associated_SNPs_21595 0 0 1 0 3 SNX1 chr15:64410316 3'AG 64410316 Downstream 100bp
chr15 64410415 64410415 1 + C A COAD 64410406 + 64410386 64410426 41 TTCTCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCC TTCTCTTCCTCCTCAGGAAGCCACAAATTATTCGAAGCCCC < 41bp 1 0.229509661369647 1 0.254152685403824 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410406 chr15:64410415 nonsynonymous SNV 0.955 0 30 hm5C_associated_SNPs_21595 0 0 1 0 3 SNX1 chr15:64410402 3'AG 64410402 Downstream 14bp
chr15 64410415 64410415 1 + C A COAD 64410406 + 64410386 64410426 41 TTCTCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCC TTCTCTTCCTCCTCAGGAAGCCACAAATTATTCGAAGCCCC < 41bp 1 0.229509661369647 1 0.254152685403824 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410406 chr15:64410415 nonsynonymous SNV 0.955 0 30 hm5C_associated_SNPs_21595 0 0 1 0 3 SNX1 chr15:64410443 5'GT 64410443 Upstream 29bp
chr15 64410415 64410415 1 + C A COAD 64410409 + 64410389 64410429 41 TCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCCAGC TCTTCCTCCTCAGGAAGCCACAAATTATTCGAAGCCCCAGC < 41bp 1 0.20053575623685 1 0.242576569318771 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410409 chr15:64410415 nonsynonymous SNV 0.955 0 27 hm5C_associated_SNPs_21596 0 0 1 0 3 SNX1 chr15:64410316 3'AG 64410316 Downstream 100bp
chr15 64410415 64410415 1 + C A COAD 64410409 + 64410389 64410429 41 TCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCCAGC TCTTCCTCCTCAGGAAGCCACAAATTATTCGAAGCCCCAGC < 41bp 1 0.20053575623685 1 0.242576569318771 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410409 chr15:64410415 nonsynonymous SNV 0.955 0 27 hm5C_associated_SNPs_21596 0 0 1 0 3 SNX1 chr15:64410402 3'AG 64410402 Downstream 14bp
chr15 64410415 64410415 1 + C A COAD 64410409 + 64410389 64410429 41 TCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCCAGC TCTTCCTCCTCAGGAAGCCACAAATTATTCGAAGCCCCAGC < 41bp 1 0.20053575623685 1 0.242576569318771 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410409 chr15:64410415 nonsynonymous SNV 0.955 0 27 hm5C_associated_SNPs_21596 0 0 1 0 3 SNX1 chr15:64410443 5'GT 64410443 Upstream 29bp
chr14 74424903 74424903 1 + C T COAD 74424923 + 74424903 74424943 41 CCATTTCCTATGGCCGACTCCAGCCCTTGGGTTCATATTAC TCATTTCCTATGGCCGACTCCAGCCCTTGGGTTCATATTAC < 41bp 1 0.408302598707614 1 0.188233017921448 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ6 ENSG00000119723 CDS Human protein_coding chr14:74424923 chr14:74424903 nonsynonymous SNV 0.990 0 1 hm5C_associated_SNPs_21597 0 0 1 0 2 COQ6 chr14:74424850 3'AG 74424850 Downstream 54bp
chr14 74424903 74424903 1 + C T COAD 74424923 + 74424903 74424943 41 CCATTTCCTATGGCCGACTCCAGCCCTTGGGTTCATATTAC TCATTTCCTATGGCCGACTCCAGCCCTTGGGTTCATATTAC < 41bp 1 0.408302598707614 1 0.188233017921448 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ6 ENSG00000119723 CDS Human protein_coding chr14:74424923 chr14:74424903 nonsynonymous SNV 0.990 0 1 hm5C_associated_SNPs_21597 0 0 1 0 2 COQ6 chr14:74424980 5'GT 74424980 Upstream 78bp
chr7 92020537 92020537 1 + C T COAD 92020521 + 92020501 92020541 41 GAAGACCTTGCCCAGAAAGTCAATAGGCCTTACCTTCGCAC GAAGACCTTGCCCAGAAAGTCAATAGGCCTTACCTTTGCAC < 41bp 1 0.509112527487692 1 0.167878895998001 experiment 0.981774945024615 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:92020521 chr7:92020537 nonsynonymous SNV 0.996 1 37 hm5C_associated_SNPs_21598 0 0 0 0 1 ANKIB1 chr7:92020480 3'AG 92020480 Downstream 58bp
chr2 54858671 54858671 1 + A C COAD 54858664 + 54858644 54858684 41 CTCCACAAGATGTGGGAGAACAGACAAAATCTCCTATCCCA CTCCACAAGATGTGGGAGAACAGACAACATCTCCTATCCCA < 41bp 1 0.300117871075326 1 0.474072575569153 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54858664 chr2:54858671 nonsynonymous SNV 0.787 0 28 hm5C_associated_SNPs_21599 0 0 1 0 1 SPTBN1 chr2:54858748 5'GT 54858748 Upstream 78bp
chr20 42089365 42089365 1 + C T COAD 42089358 + 42089338 42089378 41 TCCAGTTCCAGGTCGCGGAGCAAAGGTCGATCACGTTCTCG TCCAGTTCCAGGTCGCGGAGCAAAGGTTGATCACGTTCTCG < 41bp 1 0.45328343861816 1 0.383377909660339 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089358 chr20:42089365 stopgain 1.000 1 28 hm5C_associated_SNPs_21600 0 0 1 0 1 SRSF6 chr20:42089343 3'AG 42089343 Downstream 23bp
chr9 117053105 117053105 1 + G A COAD 117053104 + 117053084 117053124 41 TAACAGGGGGAGCAGGGAGACGATGGGGACCCTGGCCCCAT TAACAGGGGGAGCAGGGAGACAATGGGGACCCTGGCCCCAT < 41bp 1 0.333354340578629 1 0.691415011882782 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117053104 chr9:117053105 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_21601 0 0 1 0 2 COL27A1 chr9:117053090 3'AG 117053090 Downstream 16bp
chr9 117053105 117053105 1 + G A COAD 117053104 + 117053084 117053124 41 TAACAGGGGGAGCAGGGAGACGATGGGGACCCTGGCCCCAT TAACAGGGGGAGCAGGGAGACAATGGGGACCCTGGCCCCAT < 41bp 1 0.333354340578629 1 0.691415011882782 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117053104 chr9:117053105 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_21601 0 0 1 0 2 COL27A1 chr9:117053197 5'GT 117053197 Upstream 93bp
chr12 104332151 104332151 1 + G A COAD 104332136 + 104332116 104332156 41 AGACTGAAACTGTTGAGGAGCCCATGGAGGAAGAAGAAGCA AGACTGAAACTGTTGAGGAGCCCATGGAGGAAGAAAAAGCA < 41bp 1 0.101965929190679 1 0.14827099442482 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104332136 chr12:104332151 nonsynonymous SNV 0.996 1 36 hm5C_associated_SNPs_21603 0 0 1 0 3 HSP90B1 chr12:104332118 3'AG 104332118 Downstream 34bp
chr12 104332151 104332151 1 + G A COAD 104332136 + 104332116 104332156 41 AGACTGAAACTGTTGAGGAGCCCATGGAGGAAGAAGAAGCA AGACTGAAACTGTTGAGGAGCCCATGGAGGAAGAAAAAGCA < 41bp 1 0.101965929190679 1 0.14827099442482 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104332136 chr12:104332151 nonsynonymous SNV 0.996 1 36 hm5C_associated_SNPs_21603 0 0 1 0 3 HSP90B1 chr12:104332195 5'GT 104332195 Upstream 45bp
chr12 104332151 104332151 1 + G A COAD 104332136 + 104332116 104332156 41 AGACTGAAACTGTTGAGGAGCCCATGGAGGAAGAAGAAGCA AGACTGAAACTGTTGAGGAGCCCATGGAGGAAGAAAAAGCA < 41bp 1 0.101965929190679 1 0.14827099442482 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104332136 chr12:104332151 nonsynonymous SNV 0.996 1 36 hm5C_associated_SNPs_21603 0 0 1 0 3 HSP90B1 chr12:104332237 5'GT 104332237 Upstream 87bp
chr4 8284229 8284229 1 + G A COAD 8284228 + 8284208 8284248 41 GCTGACGTGGTGGAGAAGATCGCACCAGCCGTGGTCCACAT GCTGACGTGGTGGAGAAGATCACACCAGCCGTGGTCCACAT < 41bp 1 0.559185285204584 1 0.137204438447952 experiment 0.881629429590832 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8284228 chr4:8284229 nonsynonymous SNV 0.878 5 22 hm5C_associated_SNPs_21604 0 0 0 0 2 HTRA3 chr4:8284164 3'AG 8284164 Downstream 66bp
chr4 8284229 8284229 1 + G A COAD 8284228 + 8284208 8284248 41 GCTGACGTGGTGGAGAAGATCGCACCAGCCGTGGTCCACAT GCTGACGTGGTGGAGAAGATCACACCAGCCGTGGTCCACAT < 41bp 1 0.559185285204584 1 0.137204438447952 experiment 0.881629429590832 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8284228 chr4:8284229 nonsynonymous SNV 0.878 5 22 hm5C_associated_SNPs_21604 0 0 0 0 2 HTRA3 chr4:8284263 5'GT 8284263 Upstream 35bp
chr19 10403702 10403702 1 + C T COAD 10403699 + 10403679 10403719 41 CCCCGGCTAGACGATTCGGACTGCCCCAGGAGTTGGACGTG CCCCGGCTAGACGATTCGGACTGTCCCAGGAGTTGGACGTG < 41bp 1 0.133522716038837 1 0.0788630843162537 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ICAM5 ENSG00000105376 CDS Human protein_coding chr19:10403699 chr19:10403702 synonymous SNV . 0 24 hm5C_associated_SNPs_21605 0 0 1 0 1 ICAM5 chr19:10403674 3'AG 10403674 Downstream 29bp
chr11 2797241 2797241 1 + G T COAD 2797253 + 2797233 2797273 41 ACTCGCAGGGCCACCTCAACCTCATGGTGCGCATCAAGGAG ACTCGCAGTGCCACCTCAACCTCATGGTGCGCATCAAGGAG < 41bp 1 0.44964403020454 1 0.369449317455292 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2797253 chr11:2797241 nonsynonymous SNV 1.000 5 9 hm5C_associated_SNPs_21615 0 0 0 0 2 KCNQ1 chr11:2797190 3'AG 2797190 Downstream 52bp
chr11 2797241 2797241 1 + G T COAD 2797253 + 2797233 2797273 41 ACTCGCAGGGCCACCTCAACCTCATGGTGCGCATCAAGGAG ACTCGCAGTGCCACCTCAACCTCATGGTGCGCATCAAGGAG < 41bp 1 0.44964403020454 1 0.369449317455292 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2797253 chr11:2797241 nonsynonymous SNV 1.000 5 9 hm5C_associated_SNPs_21615 0 0 0 0 2 KCNQ1 chr11:2797284 5'GT 2797284 Upstream 44bp
chr16 70163012 70163012 1 + T C COAD 70163015 + 70162995 70163035 41 CTTGCCCTGGCAAGTGCTGCCTCCCAAAATGGTGAGCAGGT CTTGCCCTGGCAAGTGCCGCCTCCCAAAATGGTGAGCAGGT < 41bp 1 0.128004079604861 1 0.349769651889801 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70163015 chr16:70163012 synonymous SNV . 0 18 hm5C_associated_SNPs_21618 0 0 0 0 1 PDPR chr16:70163025 5'GT 70163025 Upstream 14bp
chr15 72855816 72855816 1 + C T COAD 72855834 + 72855814 72855854 41 TTCGCTGCAAATGTGGGCGCCAATTTTGGTAAGCAAGTGAT TTTGCTGCAAATGTGGGCGCCAATTTTGGTAAGCAAGTGAT < 41bp 1 0.0770976338492111 1 0.15314045548439 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARIH1 ENSG00000166233 CDS Human protein_coding chr15:72855834 chr15:72855816 nonsynonymous SNV 1.000 2 3 hm5C_associated_SNPs_21619 0 0 1 0 2 ARIH1 chr15:72855735 3'AG 72855735 Downstream 82bp
chr15 72855816 72855816 1 + C T COAD 72855834 + 72855814 72855854 41 TTCGCTGCAAATGTGGGCGCCAATTTTGGTAAGCAAGTGAT TTTGCTGCAAATGTGGGCGCCAATTTTGGTAAGCAAGTGAT < 41bp 1 0.0770976338492111 1 0.15314045548439 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARIH1 ENSG00000166233 CDS Human protein_coding chr15:72855834 chr15:72855816 nonsynonymous SNV 1.000 2 3 hm5C_associated_SNPs_21619 0 0 1 0 2 ARIH1 chr15:72855841 5'GT 72855841 Upstream 26bp
chr16 27642469 27642469 1 + C T COAD 27642481 + 27642461 27642501 41 TCCAGCGCCGAGGATGGCACCAGGTCTGGAGACTGTGGCCC TCCAGCGCTGAGGATGGCACCAGGTCTGGAGACTGTGGCCC < 41bp 1 0.605877694950461 1 0.405539870262146 experiment 0.788244610099078 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27642481 chr16:27642469 stopgain 0.999 1 9 hm5C_associated_SNPs_21620 0 0 1 0 2 KIAA0556 chr16:27642386 3'AG 27642386 Downstream 84bp
chr16 27642469 27642469 1 + C T COAD 27642481 + 27642461 27642501 41 TCCAGCGCCGAGGATGGCACCAGGTCTGGAGACTGTGGCCC TCCAGCGCTGAGGATGGCACCAGGTCTGGAGACTGTGGCCC < 41bp 1 0.605877694950461 1 0.405539870262146 experiment 0.788244610099078 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27642481 chr16:27642469 stopgain 0.999 1 9 hm5C_associated_SNPs_21620 0 0 1 0 2 KIAA0556 chr16:27642483 5'GT 27642483 Upstream 15bp
chr1 205238152 205238152 1 + C T COAD 205238166 + 205238146 205238186 41 CCTGGACGTGCCCGATGGGGCACCGGACCCCCAGCGGACCA CCTGGATGTGCCCGATGGGGCACCGGACCCCCAGCGGACCA < 41bp 1 0.766496346573859 1 0.227075010538101 experiment 0.467007306852281 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TMCC2 ENSG00000133069 CDS Human protein_coding chr1:205238166 chr1:205238152 synonymous SNV . 0 7 hm5C_associated_SNPs_21621 0 0 0 0 1 TMCC2 chr1:205238078 3'AG 205238078 Downstream 75bp
chr21 37785221 37785221 1 + C T COAD 37785214 + 37785194 37785234 41 TGCCTTCCTGGCCATTTCTTCCACGGACGGTTACTGCTCAT TGCCTTCCTGGCCATTTCTTCCACGGATGGTTACTGCTCAT < 41bp 1 0.340324242988301 1 0.209428578615189 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37785214 chr21:37785221 synonymous SNV . 0 28 hm5C_associated_SNPs_21625 0 0 1 0 1 CHAF1B chr21:37785182 3'AG 37785182 Downstream 40bp
chr9 137021685 137021685 1 + G C COAD 137021694 + 137021674 137021714 41 TTCAGACGAAAGAGATTGTACAGAAACTACAAGGCCACACA TTCAGACGAAACAGATTGTACAGAAACTACAAGGCCACACA < 41bp 1 0.62851266241138 1 0.380642056465149 experiment 0.74297467517724 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR5 ENSG00000196363 CDS Human protein_coding chr9:137021694 chr9:137021685 nonsynonymous SNV 0.990 1 12 hm5C_associated_SNPs_21627 0 0 1 0 2 WDR5 chr9:137021628 3'AG 137021628 Downstream 58bp
chr9 137021685 137021685 1 + G C COAD 137021694 + 137021674 137021714 41 TTCAGACGAAAGAGATTGTACAGAAACTACAAGGCCACACA TTCAGACGAAACAGATTGTACAGAAACTACAAGGCCACACA < 41bp 1 0.62851266241138 1 0.380642056465149 experiment 0.74297467517724 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR5 ENSG00000196363 CDS Human protein_coding chr9:137021694 chr9:137021685 nonsynonymous SNV 0.990 1 12 hm5C_associated_SNPs_21627 0 0 1 0 2 WDR5 chr9:137021715 5'GT 137021715 Upstream 31bp
chrX 2641394 2641394 1 + A G COAD 2641380 + 2641360 2641400 41 GGAGGCAGTGATGGTGGAGGCAGCCACAGGAAAGAAGGGGA GGAGGCAGTGATGGTGGAGGCAGCCACAGGAAAGGAGGGGA < 41bp 1 0.400523658833123 1 0.706116080284119 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD99 ENSG00000002586 CDS Human protein_coding chrX:2641380 chrX:2641394 nonsynonymous SNV 0.052 0 35 hm5C_associated_SNPs_21629 0 0 1 0 1 CD99 chrX:2641355 3'AG 2641355 Downstream 40bp
chrX 2641394 2641394 1 + A G COAD 2641383 + 2641363 2641403 41 GGCAGTGATGGTGGAGGCAGCCACAGGAAAGAAGGGGAAGA GGCAGTGATGGTGGAGGCAGCCACAGGAAAGGAGGGGAAGA < 41bp 1 0.325370565661545 1 0.432011872529984 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CD99 ENSG00000002586 CDS Human protein_coding chrX:2641383 chrX:2641394 nonsynonymous SNV 0.052 0 32 hm5C_associated_SNPs_21630 0 0 1 0 1 CD99 chrX:2641355 3'AG 2641355 Downstream 40bp
chrX 2641394 2641394 1 + A G COAD 2641384 + 2641364 2641404 41 GCAGTGATGGTGGAGGCAGCCACAGGAAAGAAGGGGAAGAG GCAGTGATGGTGGAGGCAGCCACAGGAAAGGAGGGGAAGAG < 41bp 1 0.583363734286616 1 0.654635727405548 experiment 0.833272531426768 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CD99 ENSG00000002586 CDS Human protein_coding chrX:2641384 chrX:2641394 nonsynonymous SNV 0.052 0 31 hm5C_associated_SNPs_21631 0 0 1 0 1 CD99 chrX:2641355 3'AG 2641355 Downstream 40bp
chr14 105355856 105355856 1 + G A COAD 105355874 + 105355854 105355894 41 ACGAGGCGCCGGCAGCAGGGCTCGGATTACACGTCCACCTC ACAAGGCGCCGGCAGCAGGGCTCGGATTACACGTCCACCTC < 41bp 1 0.521066054240592 1 0.218214333057404 experiment 0.957867891518817 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEP170B ENSG00000099814 CDS Human protein_coding chr14:105355874 chr14:105355856 synonymous SNV . 0 3 hm5C_associated_SNPs_21632 0 0 1 0 1 CEP170B chr14:105355852 3'AG 105355852 Downstream 5bp
chr4 146463808 146463808 1 + A G COAD 146463820 + 146463800 146463840 41 TGGACACAAACATGATGGCGCCTCCCCTGCCCTCAGAAATC TGGACACAGACATGATGGCGCCTCCCCTGCCCTCAGAAATC < 41bp 1 0.0263546712195915 1 0.110284388065338 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146463820 chr4:146463808 nonsynonymous SNV 0.998 2 9 hm5C_associated_SNPs_21633 0 0 0 0 2 SMAD1 chr4:146463734 3'AG 146463734 Downstream 75bp
chr4 146463808 146463808 1 + A G COAD 146463820 + 146463800 146463840 41 TGGACACAAACATGATGGCGCCTCCCCTGCCCTCAGAAATC TGGACACAGACATGATGGCGCCTCCCCTGCCCTCAGAAATC < 41bp 1 0.0263546712195915 1 0.110284388065338 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146463820 chr4:146463808 nonsynonymous SNV 0.998 2 9 hm5C_associated_SNPs_21633 0 0 0 0 2 SMAD1 chr4:146463850 5'GT 146463850 Upstream 43bp
chr9 106876984 106876984 1 + G C COAD 106876976 + 106876956 106876996 41 AACTTTTGTATTTCAGGGATCCAGAGAAGAACTGGAATAGA AACTTTTGTATTTCAGGGATCCAGAGAACAACTGGAATAGA < 41bp 1 0.289359479438838 1 0.372290909290314 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMC2 ENSG00000136824 CDS Human protein_coding chr9:106876976 chr9:106876984 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_21634 0 0 1 0 1 SMC2 chr9:106876972 3'AG 106876972 Downstream 13bp
chr5 86645041 86645041 1 + C G COAD 86645061 + 86645041 86645081 41 CTGCAGTTTTCTTGTGAGGCCCTCAGATAATACTCCTGGCG GTGCAGTTTTCTTGTGAGGCCCTCAGATAATACTCCTGGCG < 41bp 1 0.16189064021191 1 0.141083419322968 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RASA1 ENSG00000145715 CDS Human protein_coding chr5:86645061 chr5:86645041 synonymous SNV . 0 1 hm5C_associated_SNPs_21635 0 0 1 0 1 RASA1 chr5:86645031 3'AG 86645031 Downstream 11bp
chr17 7836596 7836596 1 + G A COAD 7836604 + 7836584 7836624 41 CCGCCTCATGAAGGGTTAGACGGCTTCGCCCAAGAATTGAG CCGCCTCATGAAAGGTTAGACGGCTTCGCCCAAGAATTGAG < 41bp 1 0.46024179854714 1 0.243248581886292 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNTROB ENSG00000170037 CDS Human protein_coding chr17:7836604 chr17:7836596 nonsynonymous SNV 0.003 0 13 hm5C_associated_SNPs_21636 0 0 1 0 1 CNTROB chr17:7836667 5'GT 7836667 Upstream 72bp
chr7 44806254 44806254 1 + G T COAD 44806243 + 44806223 44806263 41 CATGTCTGGAGCCGGGGAGGCCCCAGAACCAGCTCTGGACG CATGTCTGGAGCCGGGGAGGCCCCAGAACCATCTCTGGACG < 41bp 1 0.560589886493581 1 0.516435444355011 experiment 0.878820227012838 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806243 chr7:44806254 nonsynonymous SNV 0.880 0 32 hm5C_associated_SNPs_21637 0 0 1 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 9bp
chr7 44806254 44806254 1 + G T COAD 44806244 + 44806224 44806264 41 ATGTCTGGAGCCGGGGAGGCCCCAGAACCAGCTCTGGACGT ATGTCTGGAGCCGGGGAGGCCCCAGAACCATCTCTGGACGT < 41bp 1 0.329691780961648 1 0.243260115385056 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806244 chr7:44806254 nonsynonymous SNV 0.880 0 31 hm5C_associated_SNPs_21638 0 0 1 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 9bp
chr7 44806254 44806254 1 + G T COAD 44806245 + 44806225 44806265 41 TGTCTGGAGCCGGGGAGGCCCCAGAACCAGCTCTGGACGTG TGTCTGGAGCCGGGGAGGCCCCAGAACCATCTCTGGACGTG < 41bp 1 0.541042636199557 1 0.264454960823059 experiment 0.917914727600886 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806245 chr7:44806254 nonsynonymous SNV 0.880 0 30 hm5C_associated_SNPs_21639 0 0 1 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 9bp
chr7 44806254 44806254 1 + G T COAD 44806246 + 44806226 44806266 41 GTCTGGAGCCGGGGAGGCCCCAGAACCAGCTCTGGACGTGA GTCTGGAGCCGGGGAGGCCCCAGAACCATCTCTGGACGTGA < 41bp 1 0.70101583850859 1 0.586799919605255 experiment 0.59796832298282 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806246 chr7:44806254 nonsynonymous SNV 0.880 0 29 hm5C_associated_SNPs_21640 0 0 1 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 9bp
chr9 33912043 33912043 1 + C A COAD 33912033 + 33912013 33912053 41 CCCAGCCAATGTCGATGCTTCAGTTATGTTCAGGAAATGGA CCCAGCCAATGTCGATGCTTCAGTTATGTTAAGGAAATGGA < 41bp 1 0.154003764227126 1 0.0804048478603363 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33912033 chr9:33912043 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_21641 0 0 1 0 2 UBE2R2 chr9:33911962 3'AG 33911962 Downstream 82bp
chr9 33912043 33912043 1 + C A COAD 33912033 + 33912013 33912053 41 CCCAGCCAATGTCGATGCTTCAGTTATGTTCAGGAAATGGA CCCAGCCAATGTCGATGCTTCAGTTATGTTAAGGAAATGGA < 41bp 1 0.154003764227126 1 0.0804048478603363 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33912033 chr9:33912043 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_21641 0 0 1 0 2 UBE2R2 chr9:33912096 5'GT 33912096 Upstream 54bp
chr19 50912817 50912817 1 + G A COAD 50912807 + 50912787 50912827 41 AGCTGGCCAAGGAGACAGACCCCCTCCGGCGCCAGGTCCTG AGCTGGCCAAGGAGACAGACCCCCTCCGGCACCAGGTCCTG < 41bp 1 0.188954749621026 1 0.0136010348796844 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912807 chr19:50912817 nonsynonymous SNV 0.995 3 31 hm5C_associated_SNPs_21642 0 0 1 0 1 POLD1 chr19:50912776 3'AG 50912776 Downstream 42bp
chr19 50912817 50912817 1 + G A COAD 50912813 + 50912793 50912833 41 CCAAGGAGACAGACCCCCTCCGGCGCCAGGTCCTGGATGGA CCAAGGAGACAGACCCCCTCCGGCACCAGGTCCTGGATGGA < 41bp 1 0.625312409902193 1 0.765428066253662 experiment 0.749375180195614 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912813 chr19:50912817 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_21643 0 0 1 0 1 POLD1 chr19:50912776 3'AG 50912776 Downstream 42bp
chr16 66977822 66977822 1 + C T COAD 66977830 + 66977810 66977850 41 ACCTACAGCCTGCGGTGGGCCGGGCTCTGAAGGCCCACAGG ACCTACAGCCTGTGGTGGGCCGGGCTCTGAAGGCCCACAGG < 41bp 1 0.766105381782156 1 0.730630338191986 experiment 0.467789236435687 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CES2 ENSG00000172831 CDS Human protein_coding chr16:66977830 chr16:66977822 nonsynonymous SNV 0.027 0 13 hm5C_associated_SNPs_21644 0 0 1 0 1 CES2 chr16:66977742 3'AG 66977742 Downstream 81bp
chr1 45973939 45973939 1 + G A COAD 45973929 + 45973909 45973949 41 TCATTGCTGACTACGAGGTGCACCCCAACCGACGCCCCAAG TCATTGCTGACTACGAGGTGCACCCCAACCAACGCCCCAAG < 41bp 1 0.249062620120748 1 0.0347805619239807 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMACHC ENSG00000132763 CDS Human protein_coding chr1:45973929 chr1:45973939 nonsynonymous SNV 0.973 5 31 hm5C_associated_SNPs_21646 0 0 1 0 2 MMACHC chr1:45973884 3'AG 45973884 Downstream 56bp
chr1 45973939 45973939 1 + G A COAD 45973929 + 45973909 45973949 41 TCATTGCTGACTACGAGGTGCACCCCAACCGACGCCCCAAG TCATTGCTGACTACGAGGTGCACCCCAACCAACGCCCCAAG < 41bp 1 0.249062620120748 1 0.0347805619239807 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMACHC ENSG00000132763 CDS Human protein_coding chr1:45973929 chr1:45973939 nonsynonymous SNV 0.973 5 31 hm5C_associated_SNPs_21646 0 0 1 0 2 MMACHC chr1:45974036 5'GT 45974036 Upstream 98bp
chr1 22333994 22333994 1 + C T COAD 22333990 + 22333970 22334010 41 ATGGTGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGT ATGGTGTGTGCTGGAGGGTACATCTGCTCCGGCTGCAACGT < 41bp 1 0.287594130771837 1 0.109822958707809 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333990 chr1:22333994 nonsynonymous SNV 0.005 1 25 hm5C_associated_SNPs_21647 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 15bp
chr1 22333994 22333994 1 + C T COAD 22333993 + 22333973 22334013 41 GTGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAG GTGTGTGCTGGAGGGTACATCTGCTCCGGCTGCAACGTGAG < 41bp 1 0.663305270108768 1 0.298627316951752 experiment 0.673389459782463 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333993 chr1:22333994 nonsynonymous SNV 0.005 1 22 hm5C_associated_SNPs_21648 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 15bp
chr1 22333994 22333994 1 + C T COAD 22333998 + 22333978 22334018 41 TGCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAGTCAGC TGCTGGAGGGTACATCTGCTCCGGCTGCAACGTGAGTCAGC < 41bp 1 0.445004749570411 1 0.276171773672104 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333998 chr1:22333994 nonsynonymous SNV 0.005 1 17 hm5C_associated_SNPs_21649 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 15bp
chr1 22333994 22333994 1 + C T COAD 22333999 + 22333979 22334019 41 GCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAGTCAGCT GCTGGAGGGTACATCTGCTCCGGCTGCAACGTGAGTCAGCT < 41bp 1 0.531958610495838 1 0.199096411466599 experiment 0.936082779008324 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333999 chr1:22333994 nonsynonymous SNV 0.005 1 16 hm5C_associated_SNPs_21650 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 15bp
chr1 22333994 22333994 1 + C T COAD 22334002 + 22333982 22334022 41 GGAGGGTACATCCGCTCCGGCTGCAACGTGAGTCAGCTCTT GGAGGGTACATCTGCTCCGGCTGCAACGTGAGTCAGCTCTT < 41bp 1 0.664385404499398 1 0.230264931917191 experiment 0.671229191001204 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22334002 chr1:22333994 nonsynonymous SNV 0.005 1 13 hm5C_associated_SNPs_21651 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 15bp
chr1 22333994 22333994 1 + C T COAD 22334005 + 22333985 22334025 41 GGGTACATCCGCTCCGGCTGCAACGTGAGTCAGCTCTTACC GGGTACATCTGCTCCGGCTGCAACGTGAGTCAGCTCTTACC < 41bp 1 0.525364709844055 1 0.196414738893509 experiment 0.949270580311889 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22334005 chr1:22333994 nonsynonymous SNV 0.005 1 10 hm5C_associated_SNPs_21652 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 15bp
chr19 10940902 10940902 1 + C T COAD 10940900 + 10940880 10940920 41 GGCCCCCCCTGATTCCTGTTCCCGTGGGGGCAGCAGCCTCC GGCCCCCCCTGATTCCTGTTCCTGTGGGGGCAGCAGCCTCC < 41bp 1 0.190906575899888 1 0.0740089118480682 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940900 chr19:10940902 synonymous SNV . 0 23 hm5C_associated_SNPs_21653 1 0 1 0 1 DNM2 chr19:10940803 3'AG 10940803 Downstream 100bp
chr19 10940902 10940902 1 + C T COAD 10940901 + 10940881 10940921 41 GCCCCCCCTGATTCCTGTTCCCGTGGGGGCAGCAGCCTCCT GCCCCCCCTGATTCCTGTTCCTGTGGGGGCAGCAGCCTCCT < 41bp 1 0.521939337925716 1 0.207538962364197 experiment 0.956121324148568 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940901 chr19:10940902 synonymous SNV . 0 22 hm5C_associated_SNPs_21654 1 0 1 0 1 DNM2 chr19:10940803 3'AG 10940803 Downstream 100bp
chr21 45534105 45534105 1 + A G COAD 45534115 + 45534095 45534135 41 TCTGTGCTGCACCACTTCCACTTCAAGGGCTCTGTGCACAG TCTGTGCTGCGCCACTTCCACTTCAAGGGCTCTGTGCACAG < 41bp 1 0.774860593524923 1 0.717414557933807 experiment 0.450278812950153 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45534115 chr21:45534105 nonsynonymous SNV 0.987 3 11 hm5C_associated_SNPs_21655 0 0 1 0 2 PWP2 chr21:45534060 3'AG 45534060 Downstream 46bp
chr21 45534105 45534105 1 + A G COAD 45534115 + 45534095 45534135 41 TCTGTGCTGCACCACTTCCACTTCAAGGGCTCTGTGCACAG TCTGTGCTGCGCCACTTCCACTTCAAGGGCTCTGTGCACAG < 41bp 1 0.774860593524923 1 0.717414557933807 experiment 0.450278812950153 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45534115 chr21:45534105 nonsynonymous SNV 0.987 3 11 hm5C_associated_SNPs_21655 0 0 1 0 2 PWP2 chr21:45534159 5'GT 45534159 Upstream 55bp
chr9 139730247 139730247 1 + G A COAD 139730261 + 139730241 139730281 41 CGCCACGCTGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGG CGCCACACTGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGG < 41bp 1 0.542351534783662 1 0.892047882080078 experiment 0.915296930432675 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139730261 chr9:139730247 synonymous SNV . 0 7 hm5C_associated_SNPs_21657 0 0 1 0 2 RABL6 chr9:139730194 3'AG 139730194 Downstream 54bp
chr9 139730247 139730247 1 + G A COAD 139730261 + 139730241 139730281 41 CGCCACGCTGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGG CGCCACACTGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGG < 41bp 1 0.542351534783662 1 0.892047882080078 experiment 0.915296930432675 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139730261 chr9:139730247 synonymous SNV . 0 7 hm5C_associated_SNPs_21657 0 0 1 0 2 RABL6 chr9:139730297 5'GT 139730297 Upstream 51bp
chr6 159086547 159086547 1 + C T COAD 159086565 + 159086545 159086585 41 GGCGCCGTGTGCCGGGGCTGCAGCCACCGCGTGTGTGCCCA GGTGCCGTGTGCCGGGGCTGCAGCCACCGCGTGTGTGCCCA < 41bp 1 0.659074091396754 1 0.523190975189209 experiment 0.681851817206492 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159086565 chr6:159086547 synonymous SNV . 0 3 hm5C_associated_SNPs_21658 0 0 0 0 1 SYTL3 chr6:159086645 5'GT 159086645 Upstream 99bp
chr11 722484 722484 1 + C T COAD 722478 + 722458 722498 41 TCCCGAGATGCCGTGGACTTCCTGCGCGGCCACCTGGTCCC TCCCGAGATGCCGTGGACTTCCTGCGTGGCCACCTGGTCCC < 41bp 1 0.325101280137441 1 0.107087254524231 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722478 chr11:722484 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_21660 0 0 1 0 2 EPS8L2 chr11:722401 3'AG 722401 Downstream 84bp
chr11 722484 722484 1 + C T COAD 722478 + 722458 722498 41 TCCCGAGATGCCGTGGACTTCCTGCGCGGCCACCTGGTCCC TCCCGAGATGCCGTGGACTTCCTGCGTGGCCACCTGGTCCC < 41bp 1 0.325101280137441 1 0.107087254524231 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722478 chr11:722484 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_21660 0 0 1 0 2 EPS8L2 chr11:722549 5'GT 722549 Upstream 66bp
chr12 58109596 58109596 1 + C T COAD 58109602 + 58109582 58109622 41 ATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTATGTGCT ATCGATCGCGTGGATGAGCCCTTGTCCTGCTCTTATGTGCT < 41bp 1 0.383112490950858 1 0.0361058413982391 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient OS9 ENSG00000135506 CDS Human protein_coding chr12:58109602 chr12:58109596 synonymous SNV . 0 15 hm5C_associated_SNPs_21661 0 0 1 0 1 OS9 chr12:58109543 3'AG 58109543 Downstream 54bp
chr12 57575018 57575018 1 + G A COAD 57575017 + 57574997 57575037 41 TGCCCACGTCAGAGACGACCCGCTCCTGCATGTGCACAGCC TGCCCACGTCAGAGACGACCCACTCCTGCATGTGCACAGCC < 41bp 1 0.0810134526198741 1 0.0814922451972961 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57575017 chr12:57575018 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_21663 0 0 1 0 1 LRP1 chr12:57574940 3'AG 57574940 Downstream 79bp
chr6 44274745 44274745 1 - C T COAD 44274726 - 44274706 44274746 41 CGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC CATCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC < 41bp 1 0.466793251579927 1 0.83631706237793 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human protein_coding chr6:44274726 chr6:44274745 nonsynonymous SNV 0.992 5 2 hm5C_associated_SNPs_21664 0 0 1 0 2 AARS2 chr6:44274660 5'GT 44274660 Upstream 86bp
chr6 44274745 44274745 1 - C T COAD 44274726 - 44274706 44274746 41 CGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC CATCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC < 41bp 1 0.466793251579927 1 0.83631706237793 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human other chr6:44274726 chr6:44274745 nonsynonymous SNV 0.992 5 2 hm5C_associated_SNPs_21664 0 0 1 0 2 AARS2 chr6:44274768 3'AG 44274768 Downstream 24bp
chr13 111111209 111111209 1 + C T COAD 111111217 + 111111197 111111237 41 CGCAGGCATCAACGGGGAGCCGGGGAGGAAAGGGGACAGAG CGCAGGCATCAATGGGGAGCCGGGGAGGAAAGGGGACAGAG < 41bp 1 0.706900772430871 1 0.839855313301086 experiment 0.586198455138258 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111217 chr13:111111209 synonymous SNV . 0 13 hm5C_associated_SNPs_21665 0 0 0 0 2 COL4A2 chr13:111111118 3'AG 111111118 Downstream 92bp
chr13 111111209 111111209 1 + C T COAD 111111217 + 111111197 111111237 41 CGCAGGCATCAACGGGGAGCCGGGGAGGAAAGGGGACAGAG CGCAGGCATCAATGGGGAGCCGGGGAGGAAAGGGGACAGAG < 41bp 1 0.706900772430871 1 0.839855313301086 experiment 0.586198455138258 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111217 chr13:111111209 synonymous SNV . 0 13 hm5C_associated_SNPs_21665 0 0 0 0 2 COL4A2 chr13:111111281 5'GT 111111281 Upstream 73bp
chr4 6642902 6642902 1 + A G COAD 6642888 + 6642868 6642908 41 GGCCAAGAGGTGCGAGAAGGCCGAGGAGAAGGCCAAGGAGA GGCCAAGAGGTGCGAGAAGGCCGAGGAGAAGGCCGAGGAGA < 41bp 1 0.759279882378159 1 0.744000375270844 experiment 0.481440235243682 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRFAP1 ENSG00000179010 CDS Human protein_coding chr4:6642888 chr4:6642902 nonsynonymous SNV 0.947 1 35 hm5C_associated_SNPs_21666 0 0 1 0 1 MRFAP1 chr4:6642985 5'GT 6642985 Upstream 84bp
chr7 150704193 150704193 1 + C T COAD 150704202 + 150704182 150704222 41 CACCCCAGGTTCTGTGTGTTCGGGCTCGGCTCCCGGGCATA CACCCCAGGTTTTGTGTGTTCGGGCTCGGCTCCCGGGCATA < 41bp 1 0.740781134373578 1 0.855966448783875 experiment 0.518437731252845 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control NOS3 ENSG00000164867 CDS Human protein_coding chr7:150704202 chr7:150704193 synonymous SNV . 0 12 hm5C_associated_SNPs_21667 0 0 0 0 1 NOS3 chr7:150704190 3'AG 150704190 Downstream 4bp
chr1 16358268 16358268 1 + G A COAD 16358254 + 16358234 16358274 41 TGAACCACAGCATCACCACACTGGCCAAGGACACGCCGCTG TGAACCACAGCATCACCACACTGGCCAAGGACACACCGCTG < 41bp 1 0.417056905457073 1 0.593327820301056 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16358254 chr1:16358268 synonymous SNV . 0 35 hm5C_associated_SNPs_21670 0 0 0 0 3 CLCNKA chr1:16358205 3'AG 16358205 Downstream 64bp
chr1 16358268 16358268 1 + G A COAD 16358254 + 16358234 16358274 41 TGAACCACAGCATCACCACACTGGCCAAGGACACGCCGCTG TGAACCACAGCATCACCACACTGGCCAAGGACACACCGCTG < 41bp 1 0.417056905457073 1 0.593327820301056 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16358254 chr1:16358268 synonymous SNV . 0 35 hm5C_associated_SNPs_21670 0 0 0 0 3 CLCNKA chr1:16358289 5'GT 16358289 Upstream 22bp
chr1 16358268 16358268 1 + G A COAD 16358254 + 16358234 16358274 41 TGAACCACAGCATCACCACACTGGCCAAGGACACGCCGCTG TGAACCACAGCATCACCACACTGGCCAAGGACACACCGCTG < 41bp 1 0.417056905457073 1 0.593327820301056 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16358254 chr1:16358268 synonymous SNV . 0 35 hm5C_associated_SNPs_21670 0 0 0 0 3 CLCNKA chr1:16358338 5'GT 16358338 Upstream 71bp
chr11 67202550 67202550 1 + G A COAD 67202549 + 67202529 67202569 41 TCTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG TCTACCTCCACTCCTGCCACCACCGCCGCCCTCGACCACCG < 41bp 1 0.70909657143031 1 0.317344486713409 experiment 0.58180685713938 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202549 chr11:67202550 synonymous SNV . 0 22 hm5C_associated_SNPs_21671 0 0 1 0 1 RPS6KB2 chr11:67202460 3'AG 67202460 Downstream 91bp
chr11 67202550 67202550 1 + G A COAD 67202551 + 67202531 67202571 41 TACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCGCC TACCTCCACTCCTGCCACCACCGCCGCCCTCGACCACCGCC < 41bp 1 0.357645336897268 1 0.190523743629456 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202551 chr11:67202550 synonymous SNV . 0 20 hm5C_associated_SNPs_21672 0 0 1 0 1 RPS6KB2 chr11:67202460 3'AG 67202460 Downstream 91bp
chr11 67202550 67202550 1 + G A COAD 67202555 + 67202535 67202575 41 TCCACTCCTGCCACCGCCGCCGCCCTCGACCACCGCCCCTC TCCACTCCTGCCACCACCGCCGCCCTCGACCACCGCCCCTC < 41bp 1 0.622271597910281 1 0.222388625144958 experiment 0.755456804179438 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202555 chr11:67202550 synonymous SNV . 0 16 hm5C_associated_SNPs_21673 0 0 1 0 1 RPS6KB2 chr11:67202460 3'AG 67202460 Downstream 91bp
chr20 39721181 39721181 1 + C A COAD 39721195 + 39721175 39721215 41 ATTTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT ATTTGCACCACCATATGAGCCTCTTCCAGAGAATGTCAAGT < 41bp 1 0.100197390313904 1 0.0352682173252106 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721195 chr20:39721181 synonymous SNV . 0 7 hm5C_associated_SNPs_21677 0 0 1 3 2 TOP1 chr20:39721112 3'AG 39721112 Downstream 70bp
chr20 39721181 39721181 1 + C A COAD 39721195 + 39721175 39721215 41 ATTTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT ATTTGCACCACCATATGAGCCTCTTCCAGAGAATGTCAAGT < 41bp 1 0.100197390313904 1 0.0352682173252106 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721195 chr20:39721181 synonymous SNV . 0 7 hm5C_associated_SNPs_21677 0 0 1 3 2 TOP1 chr20:39721227 5'GT 39721227 Upstream 47bp
chr15 63358179 63358179 1 + C T COAD 63358189 + 63358169 63358209 41 TGTCTATTCTCCAGCTGACCCTGGTTCTCTCTCTTAGCATC TGTCTATTCTTCAGCTGACCCTGGTTCTCTCTCTTAGCATC < 41bp 1 0.516206587373086 1 0.108930230140686 experiment 0.967586825253827 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TPM1 ENSG00000140416 CDS Human protein_coding chr15:63358189 chr15:63358179 nonsynonymous SNV 0.602 2 11 hm5C_associated_SNPs_21678 0 0 1 0 1 TPM1 chr15:63358095 3'AG 63358095 Downstream 85bp
chr15 63358179 63358179 1 + C T COAD 63358195 + 63358175 63358215 41 TTCTCCAGCTGACCCTGGTTCTCTCTCTTAGCATCCTGCCT TTCTTCAGCTGACCCTGGTTCTCTCTCTTAGCATCCTGCCT < 41bp 1 0.114511674060045 1 0.0443845987319946 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPM1 ENSG00000140416 CDS Human protein_coding chr15:63358195 chr15:63358179 nonsynonymous SNV 0.602 2 5 hm5C_associated_SNPs_21679 0 0 1 0 1 TPM1 chr15:63358095 3'AG 63358095 Downstream 85bp
chr7 5336823 5336823 1 + C T COAD 5336820 + 5336800 5336840 41 CACGACGTTGTCGCCGGGGACGTCCACTTCGTAAGTGCGCA CACGACGTTGTCGCCGGGGACGTTCACTTCGTAAGTGCGCA < 41bp 1 0.0349921875482977 1 0.0635756552219391 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5336820 chr7:5336823 synonymous SNV . 0 24 hm5C_associated_SNPs_21680 0 0 1 0 1 SLC29A4 chr7:5336829 5'GT 5336829 Upstream 7bp
chr1 21771647 21771647 1 + C T COAD 21771644 + 21771624 21771664 41 AGGCCCTGATGTAGAAACTTCCCCATTCGGTGCACCAAGAG AGGCCCTGATGTAGAAACTTCCCTATTCGGTGCACCAAGAG < 41bp 1 0.283461270952681 1 0.296848237514496 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBPF3 ENSG00000142794 CDS Human protein_coding chr1:21771644 chr1:21771647 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_21681 0 0 1 0 1 NBPF3 chr1:21771712 5'GT 21771712 Upstream 66bp
chr3 4776937 4776937 1 + C A COAD 4776929 + 4776909 4776949 41 TCACCTTGACAAGGAGGGGGCTTCCAATCTAGTTATCGACC TCACCTTGACAAGGAGGGGGCTTCCAATATAGTTATCGACC < 41bp 1 0.0226176248701017 1 0.0920966863632202 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4776929 chr3:4776937 nonsynonymous SNV 0.984 5 29 hm5C_associated_SNPs_21684 0 0 1 0 1 ITPR1 chr3:4776848 3'AG 4776848 Downstream 90bp
chr1 45808613 45808613 1 + G A COAD 45808600 + 45808580 45808620 41 ATCCTTCCAGCATGAGGGACCATATTGATTACCGCTGCTGC ATCCTTCCAGCATGAGGGACCATATTGATTACCACTGCTGC < 41bp 1 0.0962581955528892 1 0.0473159849643707 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TOE1 ENSG00000132773 CDS Human protein_coding chr1:45808600 chr1:45808613 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_21686 0 0 1 1 1 TOE1 chr1:45808515 3'AG 45808515 Downstream 99bp
chr13 93879772 93879772 1 + C T COAD 93879771 + 93879751 93879791 41 GCTGCTGCTCTCCCTCCCCGCCGGGGCGGATGTGAAGGCTC GCTGCTGCTCTCCCTCCCCGCTGGGGCGGATGTGAAGGCTC < 41bp 1 0.727634719089821 1 0.894984602928162 experiment 0.544730561820359 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPC6 ENSG00000183098 CDS Human protein_coding chr13:93879771 chr13:93879772 synonymous SNV . 0 22 hm5C_associated_SNPs_21687 0 0 1 0 1 GPC6 chr13:93879869 5'GT 93879869 Upstream 98bp
chr11 61252184 61252184 1 + C T COAD 61252171 + 61252151 61252191 41 TCCTCCCAGGTCCGGAAGGTCCATTTCGACACCCAGGAGCA TCCTCCCAGGTCCGGAAGGTCCATTTCGACACCTAGGAGCA < 41bp 1 0.103319705387553 1 0.0580916106700897 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61252171 chr11:61252184 stopgain 0.995 0 34 hm5C_associated_SNPs_21688 0 0 0 0 1 PPP1R32 chr11:61252160 3'AG 61252160 Downstream 25bp
chrX 152088926 152088926 1 + C T COAD 152088929 + 152088909 152088949 41 CCCCGGGAGCACTCCTACGTCCTGTCAGCGGCCAAGAAGAG CCCCGGGAGCACTCCTATGTCCTGTCAGCGGCCAAGAAGAG < 41bp 1 0.211155668524118 1 0.113571554422379 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152088929 chrX:152088926 synonymous SNV . 0 18 hm5C_associated_SNPs_21689 0 0 0 0 1 ZNF185 chrX:152088955 5'GT 152088955 Upstream 30bp
chr1 223934705 223934705 1 + C T COAD 223934719 + 223934699 223934739 41 GATCAACGGATGCTATGAAGCGCTATCAGGGGGTGCCACCA GATCAATGGATGCTATGAAGCGCTATCAGGGGGTGCCACCA < 41bp 1 0.742143655257172 1 0.660180330276489 experiment 0.515712689485655 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223934719 chr1:223934705 synonymous SNV . 0 7 hm5C_associated_SNPs_21690 0 0 1 0 1 CAPN2 chr1:223934699 3'AG 223934699 Downstream 7bp
chr1 223934705 223934705 1 + C T COAD 223934721 + 223934701 223934741 41 TCAACGGATGCTATGAAGCGCTATCAGGGGGTGCCACCACT TCAATGGATGCTATGAAGCGCTATCAGGGGGTGCCACCACT < 41bp 1 0.0655229726604789 1 0.064136415719986 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223934721 chr1:223934705 synonymous SNV . 0 5 hm5C_associated_SNPs_21691 0 0 1 0 1 CAPN2 chr1:223934699 3'AG 223934699 Downstream 7bp
chr2 85598241 85598241 1 + G A COAD 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGACTCGCCGCCCTCCGACACTACCTCT < 41bp 1 0.369796373685449 1 0.271815210580826 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598241 synonymous SNV . 0 16 hm5C_associated_SNPs_21692 0 0 0 1 1 ELMOD3 chr2:85598209 3'AG 85598209 Downstream 33bp
chr2 85598241 85598241 1 + G A COAD 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGACTCGCCGCCCTCCGACACTACCTCTTCGGG < 41bp 1 0.691612576399922 1 0.803031206130981 experiment 0.616774847200155 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598241 synonymous SNV . 0 11 hm5C_associated_SNPs_21693 0 0 0 1 1 ELMOD3 chr2:85598209 3'AG 85598209 Downstream 33bp
chr2 121554970 121554970 1 + T C COAD 121554962 + 121554942 121554982 41 AAAAGTGGGATCCTGGAGGCCGCTGGCTTCCCCGACCCGGG AAAAGTGGGATCCTGGAGGCCGCTGGCTCCCCCGACCCGGG < 41bp 1 0.310229946578531 1 0.559940218925476 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GLI2 ENSG00000074047 CDS Human protein_coding chr2:121554962 chr2:121554970 nonsynonymous SNV 0.825 3 29 hm5C_associated_SNPs_21695 0 0 0 0 1 GLI2 chr2:121555044 5'GT 121555044 Upstream 75bp
chr3 51315089 51315089 1 + C T COAD 51315093 + 51315073 51315113 41 TGGAGAGCCTCCTGGACGTGCTCTTGCAGACTCTGCTCACC TGGAGAGCCTCCTGGATGTGCTCTTGCAGACTCTGCTCACC < 41bp 1 0.128353176659507 1 0.0677226483821869 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DOCK3 ENSG00000088538 CDS Human protein_coding chr3:51315093 chr3:51315089 synonymous SNV . 0 17 hm5C_associated_SNPs_21707 0 0 1 0 2 DOCK3 chr3:51315039 3'AG 51315039 Downstream 51bp
chr3 51315089 51315089 1 + C T COAD 51315093 + 51315073 51315113 41 TGGAGAGCCTCCTGGACGTGCTCTTGCAGACTCTGCTCACC TGGAGAGCCTCCTGGATGTGCTCTTGCAGACTCTGCTCACC < 41bp 1 0.128353176659507 1 0.0677226483821869 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DOCK3 ENSG00000088538 CDS Human protein_coding chr3:51315093 chr3:51315089 synonymous SNV . 0 17 hm5C_associated_SNPs_21707 0 0 1 0 2 DOCK3 chr3:51315185 5'GT 51315185 Upstream 97bp
chr13 111287911 111287911 1 + G A COAD 111287910 + 111287890 111287930 41 GTGGTCCAGAAAGGAGAGCGCGACATCCTCTCCAACGGCCA GTGGTCCAGAAAGGAGAGCGCAACATCCTCTCCAACGGCCA < 41bp 1 0.690660604881182 1 0.152411878108978 experiment 0.618678790237637 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NAXD ENSG00000213995 CDS Human protein_coding chr13:111287910 chr13:111287911 nonsynonymous SNV 0.004 4 22 hm5C_associated_SNPs_21708 0 0 1 0 2 NAXD chr13:111287815 3'AG 111287815 Downstream 97bp
chr13 111287911 111287911 1 + G A COAD 111287910 + 111287890 111287930 41 GTGGTCCAGAAAGGAGAGCGCGACATCCTCTCCAACGGCCA GTGGTCCAGAAAGGAGAGCGCAACATCCTCTCCAACGGCCA < 41bp 1 0.690660604881182 1 0.152411878108978 experiment 0.618678790237637 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NAXD ENSG00000213995 CDS Human protein_coding chr13:111287910 chr13:111287911 nonsynonymous SNV 0.004 4 22 hm5C_associated_SNPs_21708 0 0 1 0 2 NAXD chr13:111287820 3'AG 111287820 Downstream 92bp
chr4 78086980 78086980 1 + G A COAD 78086960 + 78086940 78086980 41 CTTTTTCTCTTTAGTGAGGACTCTTGTGAAGATATGAGTTG CTTTTTCTCTTTAGTGAGGACTCTTGTGAAGATATGAGTTA < 41bp 1 0.165036385857009 1 0.2591632604599 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCNG2 ENSG00000138764 CDS Human protein_coding chr4:78086960 chr4:78086980 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_21709 0 0 1 0 1 CCNG2 chr4:78086954 3'AG 78086954 Downstream 27bp
chr9 131247126 131247126 1 + G T COAD 131247109 + 131247089 131247129 41 CCATCCGAGCCCAGAAGGAGCGAGCCGAGAAGAGCGAGGAG CCATCCGAGCCCAGAAGGAGCGAGCCGAGAAGAGCGATGAG < 41bp 1 0.407000356087603 1 0.510841488838196 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ODF2 ENSG00000136811 CDS Human protein_coding chr9:131247109 chr9:131247126 nonsynonymous SNV 0.932 4 38 hm5C_associated_SNPs_21710 0 0 1 0 1 ODF2 chr9:131247165 5'GT 131247165 Upstream 40bp
chr5 10263288 10263288 1 + G A COAD 10263299 + 10263279 10263319 41 TTTGCCGACGCACTGGAGGTCATCCCCATGGCCCTCTCTGA TTTGCCGACACACTGGAGGTCATCCCCATGGCCCTCTCTGA < 41bp 1 0.0998781612215391 1 0.054828017950058 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10263299 chr5:10263288 nonsynonymous SNV 0.006 4 10 hm5C_associated_SNPs_21712 0 0 1 0 1 CCT5 chr5:10263246 3'AG 10263246 Downstream 43bp
chr3 61975365 61975365 1 + T C COAD 61975349 + 61975329 61975369 41 CTAGTGTCAGCTGTGGGGGCCGTCACCAGTCTCCTATTGAC CTAGTGTCAGCTGTGGGGGCCGTCACCAGTCTCCTACTGAC < 41bp 1 0.205930376668183 1 0.184089571237564 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:61975349 chr3:61975365 nonsynonymous SNV 0.997 1 37 hm5C_associated_SNPs_21713 0 0 1 0 1 PTPRG chr3:61975299 3'AG 61975299 Downstream 67bp
chr19 4268630 4268630 1 + C T COAD 4268640 + 4268620 4268660 41 TGACGCCTGGCGCGTCCTCCCTGAGCCAACTGGGTGCATAC TGACGCCTGGTGCGTCCTCCCTGAGCCAACTGGGTGCATAC < 41bp 1 0.764945869643838 1 0.502533853054047 experiment 0.470108260712324 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC94 ENSG00000105248 CDS Human protein_coding chr19:4268640 chr19:4268630 synonymous SNV . 0 11 hm5C_associated_SNPs_21715 0 0 1 0 1 CCDC94 chr19:4268581 3'AG 4268581 Downstream 50bp
chr1 155033946 155033946 1 + C A COAD 155033936 + 155033916 155033956 41 CCCCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG CCCCCCCTTCCAGGCCGCTGCCGCCTGACCATGTGTCCAAG < 41bp 1 0.220807260232344 1 0.274939805269241 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155033936 chr1:155033946 nonsynonymous SNV 0.998 3 31 hm5C_associated_SNPs_21716 0 0 1 0 3 ADAM15 chr1:155033891 3'AG 155033891 Downstream 56bp
chr1 155033946 155033946 1 + C A COAD 155033936 + 155033916 155033956 41 CCCCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG CCCCCCCTTCCAGGCCGCTGCCGCCTGACCATGTGTCCAAG < 41bp 1 0.220807260232344 1 0.274939805269241 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155033936 chr1:155033946 nonsynonymous SNV 0.998 3 31 hm5C_associated_SNPs_21716 0 0 1 0 3 ADAM15 chr1:155033894 3'AG 155033894 Downstream 53bp
chr1 155033946 155033946 1 + C A COAD 155033936 + 155033916 155033956 41 CCCCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG CCCCCCCTTCCAGGCCGCTGCCGCCTGACCATGTGTCCAAG < 41bp 1 0.220807260232344 1 0.274939805269241 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155033936 chr1:155033946 nonsynonymous SNV 0.998 3 31 hm5C_associated_SNPs_21716 0 0 1 0 3 ADAM15 chr1:155033965 5'GT 155033965 Upstream 20bp
chr22 42042964 42042964 1 + G T COAD 42042976 + 42042956 42042996 41 TCCAGAAGGCTCTCAAGCCTCCTCCAATAAAGCTCTATCGG TCCAGAAGTCTCTCAAGCCTCCTCCAATAAAGCTCTATCGG < 41bp 1 0.0797976727678391 1 0.224242150783539 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42042976 chr22:42042964 nonsynonymous SNV 0.861 3 9 hm5C_associated_SNPs_21719 0 0 1 0 1 XRCC6 chr22:42042900 3'AG 42042900 Downstream 65bp
chr17 53852170 53852170 1 + G T COAD 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTCTATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT < 41bp 1 0.288001746518068 1 0.117260336875916 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852170 nonsynonymous SNV 0.998 4 6 hm5C_associated_SNPs_21721 0 0 1 3 2 PCTP chr17:53852153 3'AG 53852153 Downstream 18bp
chr17 53852170 53852170 1 + G T COAD 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTCTATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT < 41bp 1 0.288001746518068 1 0.117260336875916 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852170 nonsynonymous SNV 0.998 4 6 hm5C_associated_SNPs_21721 0 0 1 3 2 PCTP chr17:53852220 5'GT 53852220 Upstream 51bp
chr3 11596306 11596306 1 + G A COAD 11596287 + 11596267 11596307 41 CTCCCCTTCTCCATGCAGATCTGGGACATGAGCGATGATGA CTCCCCTTCTCCATGCAGATCTGGGACATGAGCGATGATAA < 41bp 1 0.607311861176282 1 0.543082594871521 experiment 0.785376277647436 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATG7 ENSG00000197548 CDS Human protein_coding chr3:11596287 chr3:11596306 nonsynonymous SNV 0.489 3 40 hm5C_associated_SNPs_21722 0 0 1 0 1 ATG7 chr3:11596285 3'AG 11596285 Downstream 22bp
chr3 17056270 17056270 1 + C T COAD 17056251 + 17056231 17056271 41 GCCTCTCCTCTGTGGCCAATCTCATGCAGTGCATGTTGGCG GCCTCTCCTCTGTGGCCAATCTCATGCAGTGCATGTTGGTG < 41bp 1 0.562324878900311 1 0.148534685373306 experiment 0.875350242199379 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCL2 ENSG00000154822 CDS Human protein_coding chr3:17056251 chr3:17056270 nonsynonymous SNV 0.880 1 40 hm5C_associated_SNPs_21723 0 0 0 0 1 PLCL2 chr3:17056200 3'AG 17056200 Downstream 71bp
chr19 54631736 54631736 1 + G A COAD 54631719 + 54631699 54631739 41 CGGCTGGGGCTGACGGAGATCCGGAAGCAGGCCAACCGTAT CGGCTGGGGCTGACGGAGATCCGGAAGCAGGCCAACCATAT < 41bp 1 0.780935053760038 1 0.699302017688751 experiment 0.438129892479924 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54631719 chr19:54631736 nonsynonymous SNV 0.984 5 38 hm5C_associated_SNPs_21724 0 0 1 0 2 PRPF31 chr19:54631680 3'AG 54631680 Downstream 57bp
chr19 54631736 54631736 1 + G A COAD 54631719 + 54631699 54631739 41 CGGCTGGGGCTGACGGAGATCCGGAAGCAGGCCAACCGTAT CGGCTGGGGCTGACGGAGATCCGGAAGCAGGCCAACCATAT < 41bp 1 0.780935053760038 1 0.699302017688751 experiment 0.438129892479924 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54631719 chr19:54631736 nonsynonymous SNV 0.984 5 38 hm5C_associated_SNPs_21724 0 0 1 0 2 PRPF31 chr19:54631752 5'GT 54631752 Upstream 17bp
chr19 54631736 54631736 1 + G A COAD 54631730 + 54631710 54631750 41 GACGGAGATCCGGAAGCAGGCCAACCGTATGAGCTTCGGAG GACGGAGATCCGGAAGCAGGCCAACCATATGAGCTTCGGAG < 41bp 1 0.0928509581792803 1 0.119075268507004 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54631730 chr19:54631736 nonsynonymous SNV 0.984 5 27 hm5C_associated_SNPs_21725 0 0 1 0 2 PRPF31 chr19:54631680 3'AG 54631680 Downstream 57bp
chr19 54631736 54631736 1 + G A COAD 54631730 + 54631710 54631750 41 GACGGAGATCCGGAAGCAGGCCAACCGTATGAGCTTCGGAG GACGGAGATCCGGAAGCAGGCCAACCATATGAGCTTCGGAG < 41bp 1 0.0928509581792803 1 0.119075268507004 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54631730 chr19:54631736 nonsynonymous SNV 0.984 5 27 hm5C_associated_SNPs_21725 0 0 1 0 2 PRPF31 chr19:54631752 5'GT 54631752 Upstream 17bp
chr19 54631736 54631736 1 + G A COAD 54631731 + 54631711 54631751 41 ACGGAGATCCGGAAGCAGGCCAACCGTATGAGCTTCGGAGA ACGGAGATCCGGAAGCAGGCCAACCATATGAGCTTCGGAGA < 41bp 1 0.284180553666371 1 0.0682839155197144 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54631731 chr19:54631736 nonsynonymous SNV 0.984 5 26 hm5C_associated_SNPs_21726 0 0 1 0 2 PRPF31 chr19:54631680 3'AG 54631680 Downstream 57bp
chr19 54631736 54631736 1 + G A COAD 54631731 + 54631711 54631751 41 ACGGAGATCCGGAAGCAGGCCAACCGTATGAGCTTCGGAGA ACGGAGATCCGGAAGCAGGCCAACCATATGAGCTTCGGAGA < 41bp 1 0.284180553666371 1 0.0682839155197144 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54631731 chr19:54631736 nonsynonymous SNV 0.984 5 26 hm5C_associated_SNPs_21726 0 0 1 0 2 PRPF31 chr19:54631752 5'GT 54631752 Upstream 17bp
chr19 54631736 54631736 1 + G A COAD 54631735 + 54631715 54631755 41 AGATCCGGAAGCAGGCCAACCGTATGAGCTTCGGAGAGGTC AGATCCGGAAGCAGGCCAACCATATGAGCTTCGGAGAGGTC < 41bp 1 0.145869912789041 1 0.153338491916656 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54631735 chr19:54631736 nonsynonymous SNV 0.984 5 22 hm5C_associated_SNPs_21727 0 0 1 0 2 PRPF31 chr19:54631680 3'AG 54631680 Downstream 57bp
chr19 54631736 54631736 1 + G A COAD 54631735 + 54631715 54631755 41 AGATCCGGAAGCAGGCCAACCGTATGAGCTTCGGAGAGGTC AGATCCGGAAGCAGGCCAACCATATGAGCTTCGGAGAGGTC < 41bp 1 0.145869912789041 1 0.153338491916656 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54631735 chr19:54631736 nonsynonymous SNV 0.984 5 22 hm5C_associated_SNPs_21727 0 0 1 0 2 PRPF31 chr19:54631752 5'GT 54631752 Upstream 17bp
chr19 54631736 54631736 1 + G A COAD 54631743 + 54631723 54631763 41 AAGCAGGCCAACCGTATGAGCTTCGGAGAGGTCAGACTCCC AAGCAGGCCAACCATATGAGCTTCGGAGAGGTCAGACTCCC < 41bp 1 0.33408603037653 1 0.050141841173172 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54631743 chr19:54631736 nonsynonymous SNV 0.984 5 14 hm5C_associated_SNPs_21728 0 0 1 0 2 PRPF31 chr19:54631680 3'AG 54631680 Downstream 57bp
chr19 54631736 54631736 1 + G A COAD 54631743 + 54631723 54631763 41 AAGCAGGCCAACCGTATGAGCTTCGGAGAGGTCAGACTCCC AAGCAGGCCAACCATATGAGCTTCGGAGAGGTCAGACTCCC < 41bp 1 0.33408603037653 1 0.050141841173172 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54631743 chr19:54631736 nonsynonymous SNV 0.984 5 14 hm5C_associated_SNPs_21728 0 0 1 0 2 PRPF31 chr19:54631752 5'GT 54631752 Upstream 17bp
chr19 54631736 54631736 1 + G A COAD 54631746 + 54631726 54631766 41 CAGGCCAACCGTATGAGCTTCGGAGAGGTCAGACTCCCAGA CAGGCCAACCATATGAGCTTCGGAGAGGTCAGACTCCCAGA < 41bp 1 0.641038873865038 1 0.710952281951904 experiment 0.717922252269925 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54631746 chr19:54631736 nonsynonymous SNV 0.984 5 11 hm5C_associated_SNPs_21729 0 0 1 0 2 PRPF31 chr19:54631680 3'AG 54631680 Downstream 57bp
chr19 54631736 54631736 1 + G A COAD 54631746 + 54631726 54631766 41 CAGGCCAACCGTATGAGCTTCGGAGAGGTCAGACTCCCAGA CAGGCCAACCATATGAGCTTCGGAGAGGTCAGACTCCCAGA < 41bp 1 0.641038873865038 1 0.710952281951904 experiment 0.717922252269925 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54631746 chr19:54631736 nonsynonymous SNV 0.984 5 11 hm5C_associated_SNPs_21729 0 0 1 0 2 PRPF31 chr19:54631752 5'GT 54631752 Upstream 17bp
chr22 39078403 39078403 1 + G A COAD 39078388 + 39078368 39078408 41 AGATGTTTCCGGAGAGGGTCCGGTCCGCGGCCGGAGCCACT AGATGTTTCCGGAGAGGGTCCGGTCCGCGGCCGGAACCACT < 41bp 1 0.319445004846113 1 0.515018165111542 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078388 chr22:39078403 nonsynonymous SNV 0.998 1 36 hm5C_associated_SNPs_21730 0 0 1 0 2 TOMM22 chr22:39078328 3'AG 39078328 Downstream 76bp
chr22 39078403 39078403 1 + G A COAD 39078388 + 39078368 39078408 41 AGATGTTTCCGGAGAGGGTCCGGTCCGCGGCCGGAGCCACT AGATGTTTCCGGAGAGGGTCCGGTCCGCGGCCGGAACCACT < 41bp 1 0.319445004846113 1 0.515018165111542 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078388 chr22:39078403 nonsynonymous SNV 0.998 1 36 hm5C_associated_SNPs_21730 0 0 1 0 2 TOMM22 chr22:39078446 5'GT 39078446 Upstream 44bp
chr19 18976564 18976564 1 + C A COAD 18976545 + 18976525 18976565 41 ATCTCCATGAGCCAGCCTTCCCAGATGAGCCAGCCCGGCCT ATCTCCATGAGCCAGCCTTCCCAGATGAGCCAGCCCGGCAT < 41bp 1 0.747382643909781 1 0.238314062356949 experiment 0.505234712180437 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18976545 chr19:18976564 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_21731 0 0 1 0 1 UPF1 chr19:18976587 5'GT 18976587 Upstream 24bp
chr12 52636842 52636842 1 + G A COAD 52636840 + 52636820 52636860 41 GGGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGAT GGGAAGCATGGGGACGACCTCCAGAATACCCGGAATGAGAT < 41bp 1 0.494697165912319 1 0.729472398757935 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636840 chr12:52636842 nonsynonymous SNV 0.298 2 23 hm5C_associated_SNPs_21732 0 0 0 0 2 KRT7 chr12:52636796 3'AG 52636796 Downstream 47bp
chr12 52636842 52636842 1 + G A COAD 52636840 + 52636820 52636860 41 GGGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGAT GGGAAGCATGGGGACGACCTCCAGAATACCCGGAATGAGAT < 41bp 1 0.494697165912319 1 0.729472398757935 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636840 chr12:52636842 nonsynonymous SNV 0.298 2 23 hm5C_associated_SNPs_21732 0 0 0 0 2 KRT7 chr12:52636921 5'GT 52636921 Upstream 80bp
chr12 52636842 52636842 1 + G A COAD 52636841 + 52636821 52636861 41 GGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGATT GGAAGCATGGGGACGACCTCCAGAATACCCGGAATGAGATT < 41bp 1 0.600032561608572 1 0.877696990966797 experiment 0.799934876782856 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636841 chr12:52636842 nonsynonymous SNV 0.298 2 22 hm5C_associated_SNPs_21733 0 0 0 0 2 KRT7 chr12:52636796 3'AG 52636796 Downstream 47bp
chr12 52636842 52636842 1 + G A COAD 52636841 + 52636821 52636861 41 GGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGATT GGAAGCATGGGGACGACCTCCAGAATACCCGGAATGAGATT < 41bp 1 0.600032561608572 1 0.877696990966797 experiment 0.799934876782856 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636841 chr12:52636842 nonsynonymous SNV 0.298 2 22 hm5C_associated_SNPs_21733 0 0 0 0 2 KRT7 chr12:52636921 5'GT 52636921 Upstream 80bp
chr2 118579618 118579618 1 + G A COAD 118579611 + 118579591 118579631 41 TCAACATCATTGTGGCCACACCAGGCCGTCTGCTGGACCAT TCAACATCATTGTGGCCACACCAGGCCATCTGCTGGACCAT < 41bp 1 0.499974289134511 1 0.112006306648254 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579611 chr2:118579618 nonsynonymous SNV 0.988 3 28 hm5C_associated_SNPs_21734 0 0 1 0 1 DDX18 chr2:118579637 5'GT 118579637 Upstream 20bp
chr9 136217511 136217511 1 + G T COAD 136217530 + 136217510 136217550 41 AGGGAAAGGCAAGACTGGGACGTCTAGTCCACAGGAAGACC ATGGAAAGGCAAGACTGGGACGTCTAGTCCACAGGAAGACC < 41bp 1 0.245783928184156 1 0.0460740327835083 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136217530 chr9:136217511 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_21735 0 0 1 0 2 RPL7A chr9:136217452 3'AG 136217452 Downstream 60bp
chr9 136217511 136217511 1 + G T COAD 136217530 + 136217510 136217550 41 AGGGAAAGGCAAGACTGGGACGTCTAGTCCACAGGAAGACC ATGGAAAGGCAAGACTGGGACGTCTAGTCCACAGGAAGACC < 41bp 1 0.245783928184156 1 0.0460740327835083 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136217530 chr9:136217511 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_21735 0 0 1 0 2 RPL7A chr9:136217582 5'GT 136217582 Upstream 72bp
chr19 42796600 42796600 1 + G A COAD 42796582 + 42796562 42796602 41 TAGGCTTCACCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTG TAGGCTTCACCTCGCTGGGGCCCAGCGGCCCCGCCTTCATG < 41bp 1 0.0536465389530143 1 0.0868628919124603 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796582 chr19:42796600 nonsynonymous SNV 0.962 4 39 hm5C_associated_SNPs_21736 0 0 0 0 1 CIC chr19:42796618 5'GT 42796618 Upstream 19bp
chr19 42796600 42796600 1 + G A COAD 42796583 + 42796563 42796603 41 AGGCTTCACCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGC AGGCTTCACCTCGCTGGGGCCCAGCGGCCCCGCCTTCATGC < 41bp 1 0.157524270975082 1 0.345081865787506 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796583 chr19:42796600 nonsynonymous SNV 0.962 4 38 hm5C_associated_SNPs_21737 0 0 0 0 1 CIC chr19:42796618 5'GT 42796618 Upstream 19bp
chr19 42796600 42796600 1 + G A COAD 42796590 + 42796570 42796610 41 ACCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCT ACCTCGCTGGGGCCCAGCGGCCCCGCCTTCATGCAGCCCCT < 41bp 1 0.186859229471193 1 0.182291448116302 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796590 chr19:42796600 nonsynonymous SNV 0.962 4 31 hm5C_associated_SNPs_21738 0 0 0 0 1 CIC chr19:42796618 5'GT 42796618 Upstream 19bp
chr19 42796600 42796600 1 + G A COAD 42796591 + 42796571 42796611 41 CCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCTG CCTCGCTGGGGCCCAGCGGCCCCGCCTTCATGCAGCCCCTG < 41bp 1 0.208479570107504 1 0.0776559710502625 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796591 chr19:42796600 nonsynonymous SNV 0.962 4 30 hm5C_associated_SNPs_21739 0 0 0 0 1 CIC chr19:42796618 5'GT 42796618 Upstream 19bp
chr19 42796600 42796600 1 + G A COAD 42796592 + 42796572 42796612 41 CTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCTGC CTCGCTGGGGCCCAGCGGCCCCGCCTTCATGCAGCCCCTGC < 41bp 1 0.151140271952011 1 0.0931181013584137 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796592 chr19:42796600 nonsynonymous SNV 0.962 4 29 hm5C_associated_SNPs_21740 0 0 0 0 1 CIC chr19:42796618 5'GT 42796618 Upstream 19bp
chr19 42796600 42796600 1 + G A COAD 42796593 + 42796573 42796613 41 TCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCTGCT TCGCTGGGGCCCAGCGGCCCCGCCTTCATGCAGCCCCTGCT < 41bp 1 0.319680919065579 1 0.368123322725296 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796593 chr19:42796600 nonsynonymous SNV 0.962 4 28 hm5C_associated_SNPs_21741 0 0 0 0 1 CIC chr19:42796618 5'GT 42796618 Upstream 19bp
chr9 135942539 135942539 1 + C T COAD 135942521 + 135942501 135942541 41 GGGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTG GGGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTATTG < 41bp 1 0.253718673093335 1 0.0440284907817841 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942521 chr9:135942539 nonsynonymous SNV 0.336 4 39 hm5C_associated_SNPs_21742 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 65bp
chr9 135942539 135942539 1 + C T COAD 135942522 + 135942502 135942542 41 GGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTGA GGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTATTGA < 41bp 1 0.367940717568126 1 0.345148205757141 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942522 chr9:135942539 nonsynonymous SNV 0.336 4 38 hm5C_associated_SNPs_21743 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 65bp
chr9 135942539 135942539 1 + C T COAD 135942523 + 135942503 135942543 41 GTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTGAT GTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTATTGAT < 41bp 1 0.297706386187519 1 0.157770663499832 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942523 chr9:135942539 nonsynonymous SNV 0.336 4 37 hm5C_associated_SNPs_21744 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 65bp
chr9 135942539 135942539 1 + C T COAD 135942544 + 135942524 135942564 41 AGTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCC AGTGTCTGAAGGTTATTGATCCCCGAGCCCTGACGCTGGCC < 41bp 1 0.398054377072375 1 0.140174567699432 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942544 chr9:135942539 nonsynonymous SNV 0.336 4 16 hm5C_associated_SNPs_21745 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 65bp
chr9 135942539 135942539 1 + C T COAD 135942545 + 135942525 135942565 41 GTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCCT GTGTCTGAAGGTTATTGATCCCCGAGCCCTGACGCTGGCCT < 41bp 1 0.682624901523819 1 0.093866229057312 experiment 0.634750196952363 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942545 chr9:135942539 nonsynonymous SNV 0.336 4 15 hm5C_associated_SNPs_21746 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 65bp
chr9 135942539 135942539 1 + C T COAD 135942546 + 135942526 135942566 41 TGTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCCTA TGTCTGAAGGTTATTGATCCCCGAGCCCTGACGCTGGCCTA < 41bp 1 0.552585770946301 1 0.645807504653931 experiment 0.894828458107398 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942546 chr9:135942539 nonsynonymous SNV 0.336 4 14 hm5C_associated_SNPs_21747 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 65bp
chr9 135942539 135942539 1 + C T COAD 135942547 + 135942527 135942567 41 GTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCCTAT GTCTGAAGGTTATTGATCCCCGAGCCCTGACGCTGGCCTAT < 41bp 1 0.633650376487345 1 0.454409331083298 experiment 0.732699247025309 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942547 chr9:135942539 nonsynonymous SNV 0.336 4 13 hm5C_associated_SNPs_21748 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 65bp
chr9 135942539 135942539 1 + C T COAD 135942552 + 135942532 135942572 41 AAGGTTACTGATCCCCGAGCCCTGACGCTGGCCTATAAGGT AAGGTTATTGATCCCCGAGCCCTGACGCTGGCCTATAAGGT < 41bp 1 0.193818077031724 1 0.386031121015549 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135942552 chr9:135942539 nonsynonymous SNV 0.336 4 8 hm5C_associated_SNPs_21749 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 65bp
chr9 135942539 135942539 1 + C T COAD 135942553 + 135942533 135942573 41 AGGTTACTGATCCCCGAGCCCTGACGCTGGCCTATAAGGTG AGGTTATTGATCCCCGAGCCCTGACGCTGGCCTATAAGGTG < 41bp 1 0.325766326335237 1 0.0686376094818115 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135942553 chr9:135942539 nonsynonymous SNV 0.336 4 7 hm5C_associated_SNPs_21750 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 65bp
chrX 70517784 70517784 1 + A T COAD 70517781 + 70517761 70517801 41 AGGATTCAAGGGAACCTTCCCTGATGCGGTATATCTCCCAT AGGATTCAAGGGAACCTTCCCTGTTGCGGTATATCTCCCAT < 41bp 1 0.452949153669734 1 0.0988571345806122 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517781 chrX:70517784 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_21751 0 0 1 0 2 NONO chrX:70517686 3'AG 70517686 Downstream 99bp
chrX 70517784 70517784 1 + A T COAD 70517781 + 70517761 70517801 41 AGGATTCAAGGGAACCTTCCCTGATGCGGTATATCTCCCAT AGGATTCAAGGGAACCTTCCCTGTTGCGGTATATCTCCCAT < 41bp 1 0.452949153669734 1 0.0988571345806122 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517781 chrX:70517784 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_21751 0 0 1 0 2 NONO chrX:70517788 5'GT 70517788 Upstream 5bp
chrX 70517783 70517783 1 + G T COAD 70517781 + 70517761 70517801 41 AGGATTCAAGGGAACCTTCCCTGATGCGGTATATCTCCCAT AGGATTCAAGGGAACCTTCCCTTATGCGGTATATCTCCCAT < 41bp 1 0.283085729745391 1 0.0705422163009644 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517781 chrX:70517783 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_21753 0 0 1 0 2 NONO chrX:70517686 3'AG 70517686 Downstream 98bp
chrX 70517783 70517783 1 + G T COAD 70517781 + 70517761 70517801 41 AGGATTCAAGGGAACCTTCCCTGATGCGGTATATCTCCCAT AGGATTCAAGGGAACCTTCCCTTATGCGGTATATCTCCCAT < 41bp 1 0.283085729745391 1 0.0705422163009644 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517781 chrX:70517783 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_21753 0 0 1 0 2 NONO chrX:70517788 5'GT 70517788 Upstream 6bp
chr20 23350277 23350277 1 + C A COAD 23350279 + 23350259 23350299 41 TTCACCCAGCTCAACGCCCTCCAGCGCCACCGCCGCATCCA TTCACCCAGCTCAACGCCATCCAGCGCCACCGCCGCATCCA < 41bp 1 0.480914587917784 1 0.627912819385529 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350279 chr20:23350277 nonsynonymous SNV 0.984 4 19 hm5C_associated_SNPs_21754 0 0 0 0 1 GZF1 chr20:23350221 3'AG 23350221 Downstream 57bp
chr7 128491319 128491319 1 + A T COAD 128491320 + 128491300 128491340 41 TTCTATGTGGATGCCATCAACAGCCGCCATGTCAGTGCCTA TTCTATGTGGATGCCATCATCAGCCGCCATGTCAGTGCCTA < 41bp 1 0.414895220579047 1 0.881879270076752 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128491320 chr7:128491319 nonsynonymous SNV 1.000 5 20 hm5C_associated_SNPs_21755 0 0 1 0 2 FLNC chr7:128491286 3'AG 128491286 Downstream 34bp
chr7 128491319 128491319 1 + A T COAD 128491320 + 128491300 128491340 41 TTCTATGTGGATGCCATCAACAGCCGCCATGTCAGTGCCTA TTCTATGTGGATGCCATCATCAGCCGCCATGTCAGTGCCTA < 41bp 1 0.414895220579047 1 0.881879270076752 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128491320 chr7:128491319 nonsynonymous SNV 1.000 5 20 hm5C_associated_SNPs_21755 0 0 1 0 2 FLNC chr7:128491414 5'GT 128491414 Upstream 96bp
chr21 37781673 37781673 1 + C A COAD 37781678 + 37781658 37781698 41 AATTAATCCATTAGGCCCATCGCTCATCTTCCATGTCCTGG AATTAATCCATTAGGACCATCGCTCATCTTCCATGTCCTGG < 41bp 1 0.123765970848422 1 0.0507002174854279 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37781678 chr21:37781673 nonsynonymous SNV 0.385 4 16 hm5C_associated_SNPs_21756 0 0 0 0 2 CHAF1B chr21:37781672 3'AG 37781672 Downstream 2bp
chr21 37781673 37781673 1 + C A COAD 37781678 + 37781658 37781698 41 AATTAATCCATTAGGCCCATCGCTCATCTTCCATGTCCTGG AATTAATCCATTAGGACCATCGCTCATCTTCCATGTCCTGG < 41bp 1 0.123765970848422 1 0.0507002174854279 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37781678 chr21:37781673 nonsynonymous SNV 0.385 4 16 hm5C_associated_SNPs_21756 0 0 0 0 2 CHAF1B chr21:37781763 5'GT 37781763 Upstream 91bp
chr17 12028668 12028668 1 + T C COAD 12028682 + 12028662 12028702 41 GATGTCTGGAGTTTGGGGATCACATTGGTATGTTTATGCTG GATGTCCGGAGTTTGGGGATCACATTGGTATGTTTATGCTG < 41bp 1 0.45408098623122 1 0.128567934036255 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12028682 chr17:12028668 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_21757 0 0 1 0 2 MAP2K4 chr17:12028611 3'AG 12028611 Downstream 58bp
chr17 12028668 12028668 1 + T C COAD 12028682 + 12028662 12028702 41 GATGTCTGGAGTTTGGGGATCACATTGGTATGTTTATGCTG GATGTCCGGAGTTTGGGGATCACATTGGTATGTTTATGCTG < 41bp 1 0.45408098623122 1 0.128567934036255 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12028682 chr17:12028668 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_21757 0 0 1 0 2 MAP2K4 chr17:12028688 5'GT 12028688 Upstream 21bp
chr18 44626631 44626631 1 + G T COAD 44626629 + 44626609 44626649 41 TTTTTGGCTGTTTCAGGAGACTGAGGGCTACTCAGGCTCAG TTTTTGGCTGTTTCAGGAGACTTAGGGCTACTCAGGCTCAG < 41bp 1 0.398912187930183 1 0.319915056228638 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control KATNAL2 ENSG00000167216 CDS Human protein_coding chr18:44626629 chr18:44626631 stopgain 0.959 1 23 hm5C_associated_SNPs_21758 0 0 0 0 2 KATNAL2 chr18:44626625 3'AG 44626625 Downstream 7bp
chr18 44626631 44626631 1 + G T COAD 44626629 + 44626609 44626649 41 TTTTTGGCTGTTTCAGGAGACTGAGGGCTACTCAGGCTCAG TTTTTGGCTGTTTCAGGAGACTTAGGGCTACTCAGGCTCAG < 41bp 1 0.398912187930183 1 0.319915056228638 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control KATNAL2 ENSG00000167216 CDS Human protein_coding chr18:44626629 chr18:44626631 stopgain 0.959 1 23 hm5C_associated_SNPs_21758 0 0 0 0 2 KATNAL2 chr18:44626727 5'GT 44626727 Upstream 97bp
chr7 128486398 128486398 1 + C T COAD 128486405 + 128486385 128486425 41 AGGTCGCTGTGCCCAAGAGCCCCTTCCGAGTGGGCGTGACC AGGTCGCTGTGCCTAAGAGCCCCTTCCGAGTGGGCGTGACC < 41bp 1 0.0217944100841227 1 0.0274174511432648 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486405 chr7:128486398 synonymous SNV . 0 14 hm5C_associated_SNPs_21765 0 0 1 0 1 FLNC chr7:128486355 3'AG 128486355 Downstream 44bp
chr9 139747579 139747579 1 + C A COAD 139747567 + 139747547 139747587 41 CCAGCAGCAGGGTCCTCAGGCTGGGCCTGGGTCCCCAACCA CCAGCAGCAGGGTCCTCAGGCTGGGCCTGGGTACCCAACCA < 41bp 1 0.748049408444426 1 0.682729423046112 experiment 0.503901183111147 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139747567 chr9:139747579 synonymous SNV . 0 33 hm5C_associated_SNPs_21766 0 0 1 0 2 MAMDC4 chr9:139747554 3'AG 139747554 Downstream 26bp
chr9 139747579 139747579 1 + C A COAD 139747567 + 139747547 139747587 41 CCAGCAGCAGGGTCCTCAGGCTGGGCCTGGGTCCCCAACCA CCAGCAGCAGGGTCCTCAGGCTGGGCCTGGGTACCCAACCA < 41bp 1 0.748049408444426 1 0.682729423046112 experiment 0.503901183111147 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139747567 chr9:139747579 synonymous SNV . 0 33 hm5C_associated_SNPs_21766 0 0 1 0 2 MAMDC4 chr9:139747661 5'GT 139747661 Upstream 83bp
chr1 160323964 160323964 1 + C A COAD 160323975 + 160323955 160323995 41 TGCTGTCATCCTCAGGAGGCCAAATCAGTCCCAGCCTCTCC TGCTGTCATACTCAGGAGGCCAAATCAGTCCCAGCCTCTCC < 41bp 1 0.246346387987415 1 0.12285777926445 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCSTN ENSG00000162736 CDS Human protein_coding chr1:160323975 chr1:160323964 synonymous SNV . 0 10 hm5C_associated_SNPs_21768 0 0 1 0 1 NCSTN chr1:160323908 3'AG 160323908 Downstream 57bp
chrX 2777918 2777918 1 + G A COAD 2777923 + 2777903 2777943 41 GTCGTCCACTTTTTGGGGTCCATGAAACCTTGGAACTACAA GTCGTCCACTTTTTGAGGTCCATGAAACCTTGGAACTACAA < 41bp 1 0.275240513576667 1 0.179896503686905 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GYG2 ENSG00000056998 CDS Human protein_coding chrX:2777923 chrX:2777918 nonsynonymous SNV 0.166 4 16 hm5C_associated_SNPs_21769 0 0 0 0 1 GYG2 chrX:2777884 3'AG 2777884 Downstream 35bp
chr18 74620330 74620330 1 + C T COAD 74620335 + 74620315 74620355 41 AGCCTCGATAGATGACAGCACTGTAGACCAGCAGAGCATGC AGCCTCGATAGATGATAGCACTGTAGACCAGCAGAGCATGC < 41bp 1 0.461835542033731 1 0.208657830953598 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74620335 chr18:74620330 synonymous SNV . 0 16 hm5C_associated_SNPs_21774 0 0 1 0 1 ZNF236 chr18:74620276 3'AG 74620276 Downstream 55bp
chr14 23778031 23778031 1 + T G COAD 23778051 + 23778031 23778071 41 TTCACAGCTCTATACGGGGACGGGGCCCTGGAGGAGGCGCG GTCACAGCTCTATACGGGGACGGGGCCCTGGAGGAGGCGCG < 41bp 1 0.689924589990357 1 0.89295619726181 experiment 0.620150820019285 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCL2L2 ENSG00000129473 CDS Human protein_coding chr14:23778051 chr14:23778031 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_21777 0 0 1 0 1 BCL2L2 chr14:23778025 3'AG 23778025 Downstream 7bp
chr2 183616840 183616840 1 + A G COAD 183616850 + 183616830 183616870 41 AGTTACGAAGAGCATCAAATCTTCTTTATGGTCAGCTTAAG AGTTACGAAGGGCATCAAATCTTCTTTATGGTCAGCTTAAG < 41bp 1 0.425589180857087 1 0.254802405834198 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183616850 chr2:183616840 synonymous SNV . 0 11 hm5C_associated_SNPs_21778 0 0 1 0 2 DNAJC10 chr2:183616799 3'AG 183616799 Downstream 42bp
chr2 183616840 183616840 1 + A G COAD 183616850 + 183616830 183616870 41 AGTTACGAAGAGCATCAAATCTTCTTTATGGTCAGCTTAAG AGTTACGAAGGGCATCAAATCTTCTTTATGGTCAGCTTAAG < 41bp 1 0.425589180857087 1 0.254802405834198 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183616850 chr2:183616840 synonymous SNV . 0 11 hm5C_associated_SNPs_21778 0 0 1 0 2 DNAJC10 chr2:183616915 5'GT 183616915 Upstream 76bp
chr11 210611 210611 1 + G A COAD 210603 + 210583 210623 41 CTTTACCGACACCTGGGGACCCTTCTCCGGCACTGTGTGAT CTTTACCGACACCTGGGGACCCTTCTCCAGCACTGTGTGAT < 41bp 1 0.0123753486556758 1 0.0606067776679993 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:210603 chr11:210611 nonsynonymous SNV 0.920 3 29 hm5C_associated_SNPs_21779 0 0 1 0 2 RIC8A chr11:210571 3'AG 210571 Downstream 41bp
chr11 210611 210611 1 + G A COAD 210603 + 210583 210623 41 CTTTACCGACACCTGGGGACCCTTCTCCGGCACTGTGTGAT CTTTACCGACACCTGGGGACCCTTCTCCAGCACTGTGTGAT < 41bp 1 0.0123753486556758 1 0.0606067776679993 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:210603 chr11:210611 nonsynonymous SNV 0.920 3 29 hm5C_associated_SNPs_21779 0 0 1 0 2 RIC8A chr11:210662 5'GT 210662 Upstream 52bp
chr1 156255380 156255380 1 + G A COAD 156255378 + 156255358 156255398 41 CCGAAGACGATGCCAACCTGCTGCCTGAGAAAGCGGCCCGT CCGAAGACGATGCCAACCTGCTACCTGAGAAAGCGGCCCGT < 41bp 1 0.243629909654467 1 0.102375239133835 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM79 ENSG00000163472 CDS Human protein_coding chr1:156255378 chr1:156255380 synonymous SNV . 0 23 hm5C_associated_SNPs_21780 0 0 1 0 1 TMEM79 chr1:156255316 3'AG 156255316 Downstream 65bp
chr1 984307 984307 1 + G A COAD 984297 + 984277 984317 41 GCCGCTCCTTCCTGGCCTTCCCCACTCTCCGCGCCTACCAC GCCGCTCCTTCCTGGCCTTCCCCACTCTCCACGCCTACCAC < 41bp 1 0.118804862459393 1 0.105666905641556 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984297 chr1:984307 nonsynonymous SNV 0.107 2 31 hm5C_associated_SNPs_21781 0 0 1 0 1 AGRN chr1:984247 3'AG 984247 Downstream 61bp
chr1 228246784 228246784 1 + C T COAD 228246782 + 228246762 228246802 41 TGGTCGCAACCCGACTTCCGCGCCATCGGTGACTTCCTCAA TGGTCGCAACCCGACTTCCGCGTCATCGGTGACTTCCTCAA < 41bp 1 0.460138893473625 1 0.375212132930756 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WNT3A ENSG00000154342 CDS Human protein_coding chr1:228246782 chr1:228246784 nonsynonymous SNV 0.927 0 23 hm5C_associated_SNPs_21782 0 0 0 0 1 WNT3A chr1:228246687 3'AG 228246687 Downstream 98bp
chr6 30877253 30877253 1 + T C COAD 30877252 + 30877232 30877272 41 AGAACTGGGTGATGCGGATGCTCTTTCTGGAGCAGCCTTTG AGAACTGGGTGATGCGGATGCCCTTTCTGGAGCAGCCTTTG < 41bp 1 0.186012219232183 1 0.0337693989276886 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2H4 ENSG00000213780 CDS Human protein_coding chr6:30877252 chr6:30877253 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_21783 0 0 1 0 2 GTF2H4 chr6:30877212 3'AG 30877212 Downstream 42bp
chr6 30877253 30877253 1 + T C COAD 30877252 + 30877232 30877272 41 AGAACTGGGTGATGCGGATGCTCTTTCTGGAGCAGCCTTTG AGAACTGGGTGATGCGGATGCCCTTTCTGGAGCAGCCTTTG < 41bp 1 0.186012219232183 1 0.0337693989276886 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2H4 ENSG00000213780 CDS Human protein_coding chr6:30877252 chr6:30877253 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_21783 0 0 1 0 2 GTF2H4 chr6:30877316 5'GT 30877316 Upstream 64bp
chr19 14562786 14562786 1 + C T COAD 14562777 + 14562757 14562797 41 CGCCCAGCCCGGGGCCTTTACAGCCGAAGCGGAAGCCTCAG CGCCCAGCCCGGGGCCTTTACAGCCGAAGTGGAAGCCTCAG < 41bp 1 0.52866822001171 1 0.756251037120819 experiment 0.942663559976581 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562777 chr19:14562786 synonymous SNV . 0 30 hm5C_associated_SNPs_21790 0 0 1 0 1 PKN1 chr19:14562835 5'GT 14562835 Upstream 50bp
chrX 205508 205508 1 + C A COAD 205500 + 205480 205520 41 AACAAGGCCTTGCCCTGCATCACGCGCCCTGTCGTGCTGAA AACAAGGCCTTGCCCTGCATCACGCGCCATGTCGTGCTGAA < 41bp 1 0.48326010992496 1 0.198588818311691 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:205500 chrX:205508 nonsynonymous SNV 0.004 4 29 hm5C_associated_SNPs_21792 0 0 1 0 1 PLCXD1 chrX:205536 5'GT 205536 Upstream 29bp
chr1 222837361 222837361 1 + C T COAD 222837353 + 222837333 222837373 41 TCTGCAGGTTAATATGGCTCCAAAAGGGCCCCCTCCTTTCC TCTGCAGGTTAATATGGCTCCAAAAGGGTCCCCTCCTTTCC < 41bp 1 0.551439127903416 1 0.275359332561493 experiment 0.897121744193169 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MIA3 ENSG00000154305 CDS Human protein_coding chr1:222837353 chr1:222837361 nonsynonymous SNV 0.988 3 29 hm5C_associated_SNPs_21793 0 0 1 0 1 MIA3 chr1:222837340 3'AG 222837340 Downstream 22bp
chr9 19336771 19336771 1 + A G COAD 19336770 + 19336750 19336790 41 ATGATGCTAACAATGGGGAGCACACAGTCTTCGTCAGAGAT ATGATGCTAACAATGGGGAGCGCACAGTCTTCGTCAGAGAT < 41bp 1 0.059103813167974 1 0.213537216186523 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DENND4C ENSG00000137145 CDS Human protein_coding chr9:19336770 chr9:19336771 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_21794 0 0 1 0 1 DENND4C chr9:19336830 5'GT 19336830 Upstream 60bp
chr16 816651 816651 1 + G A COAD 816657 + 816637 816677 41 CCACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCC CCACAAGGCTCCTCAGCGGCCCCTCCCACAGGTGGCCACCC < 41bp 1 0.0171148442083467 1 0.116686791181564 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816657 chr16:816651 nonsynonymous SNV 0.016 0 15 hm5C_associated_SNPs_21796 0 0 0 0 1 MSLN chr16:816644 3'AG 816644 Downstream 8bp
chr16 816651 816651 1 + G A COAD 816658 + 816638 816678 41 CACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCCT CACAAGGCTCCTCAGCGGCCCCTCCCACAGGTGGCCACCCT < 41bp 1 0.00842070287795712 1 0.0563094913959503 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816658 chr16:816651 nonsynonymous SNV 0.016 0 14 hm5C_associated_SNPs_21797 0 0 0 0 1 MSLN chr16:816644 3'AG 816644 Downstream 8bp
chr11 108559729 108559729 1 + T C COAD 108559748 + 108559728 108559768 41 ATTCCTTTTTGAGAAGCCATCTGAAGAAGAAGAGCATTGTA ACTCCTTTTTGAGAAGCCATCTGAAGAAGAAGAGCATTGTA < 41bp 1 0.636632842715652 1 0.879376709461212 experiment 0.726734314568696 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX10 ENSG00000178105 CDS Human protein_coding chr11:108559748 chr11:108559729 synonymous SNV . 0 2 hm5C_associated_SNPs_21798 0 0 1 0 2 DDX10 chr11:108559663 3'AG 108559663 Downstream 67bp
chr11 108559729 108559729 1 + T C COAD 108559748 + 108559728 108559768 41 ATTCCTTTTTGAGAAGCCATCTGAAGAAGAAGAGCATTGTA ACTCCTTTTTGAGAAGCCATCTGAAGAAGAAGAGCATTGTA < 41bp 1 0.636632842715652 1 0.879376709461212 experiment 0.726734314568696 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX10 ENSG00000178105 CDS Human protein_coding chr11:108559748 chr11:108559729 synonymous SNV . 0 2 hm5C_associated_SNPs_21798 0 0 1 0 2 DDX10 chr11:108559789 5'GT 108559789 Upstream 61bp
chr2 99179969 99179969 1 + A G COAD 99179968 + 99179948 99179988 41 TACCCGCTGCTGACCACTCTCACCGACTGCGTGGCCATGAT TACCCGCTGCTGACCACTCTCGCCGACTGCGTGGCCATGAT < 41bp 1 0.718262083390743 1 0.827971220016479 experiment 0.563475833218514 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99179968 chr2:99179969 nonsynonymous SNV 0.993 1 22 hm5C_associated_SNPs_21799 0 0 1 0 1 INPP4A chr2:99179928 3'AG 99179928 Downstream 42bp
chr1 145115798 145115798 1 + A G COAD 145115809 + 145115789 145115829 41 ATGCGAAGTACTTGAACATGCATTCCACTTATGCCAAACTT ATGCGAAGTGCTTGAACATGCATTCCACTTATGCCAAACTT < 41bp 1 0.0545823390427078 1 0.0908592045307159 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC22B ENSG00000223380 ncRNA_exonic Human other chr1:145115809 chr1:145115798 . . 0 10 hm5C_associated_SNPs_21800 0 0 1 0 1 SEC22B chr1:145115735 3'AG 145115735 Downstream 64bp
chrX 41201832 41201832 1 + A G COAD 41201835 + 41201815 41201855 41 AAATTTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATC AAATTTGAACGTGGTGGGAACAGTCGCTGGTGTGACAAATC < 41bp 1 0.199886346363723 1 0.179742872714996 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201835 chrX:41201832 synonymous SNV . 0 18 hm5C_associated_SNPs_21801 0 0 1 0 2 DDX3X chrX:41201748 3'AG 41201748 Downstream 85bp
chrX 41201832 41201832 1 + A G COAD 41201835 + 41201815 41201855 41 AAATTTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATC AAATTTGAACGTGGTGGGAACAGTCGCTGGTGTGACAAATC < 41bp 1 0.199886346363723 1 0.179742872714996 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201835 chrX:41201832 synonymous SNV . 0 18 hm5C_associated_SNPs_21801 0 0 1 0 2 DDX3X chrX:41201906 5'GT 41201906 Upstream 75bp
chrX 41201832 41201832 1 + A G COAD 41201839 + 41201819 41201859 41 TTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATCAGAT TTGAACGTGGTGGGAACAGTCGCTGGTGTGACAAATCAGAT < 41bp 1 0.736501487172302 1 0.258240938186646 experiment 0.526997025655397 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201839 chrX:41201832 synonymous SNV . 0 14 hm5C_associated_SNPs_21802 0 0 1 0 2 DDX3X chrX:41201748 3'AG 41201748 Downstream 85bp
chrX 41201832 41201832 1 + A G COAD 41201839 + 41201819 41201859 41 TTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATCAGAT TTGAACGTGGTGGGAACAGTCGCTGGTGTGACAAATCAGAT < 41bp 1 0.736501487172302 1 0.258240938186646 experiment 0.526997025655397 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201839 chrX:41201832 synonymous SNV . 0 14 hm5C_associated_SNPs_21802 0 0 1 0 2 DDX3X chrX:41201906 5'GT 41201906 Upstream 75bp
chrX 41201832 41201832 1 + A G COAD 41201850 + 41201830 41201870 41 GGAAACAGTCGCTGGTGTGACAAATCAGATGAAGATGATTG GGGAACAGTCGCTGGTGTGACAAATCAGATGAAGATGATTG < 41bp 1 0.301604919093348 1 0.562578678131104 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201850 chrX:41201832 synonymous SNV . 0 3 hm5C_associated_SNPs_21803 0 0 1 0 2 DDX3X chrX:41201748 3'AG 41201748 Downstream 85bp
chrX 41201832 41201832 1 + A G COAD 41201850 + 41201830 41201870 41 GGAAACAGTCGCTGGTGTGACAAATCAGATGAAGATGATTG GGGAACAGTCGCTGGTGTGACAAATCAGATGAAGATGATTG < 41bp 1 0.301604919093348 1 0.562578678131104 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201850 chrX:41201832 synonymous SNV . 0 3 hm5C_associated_SNPs_21803 0 0 1 0 2 DDX3X chrX:41201906 5'GT 41201906 Upstream 75bp
chr8 27288527 27288527 1 + A T COAD 27288507 + 27288487 27288527 41 CCGGCTTCGCCAACATCGACCAGGAGACCTACCGCTGTGAA CCGGCTTCGCCAACATCGACCAGGAGACCTACCGCTGTGAT < 41bp 1 0.709861497789623 1 0.972589492797852 experiment 0.580277004420754 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTK2B ENSG00000120899 CDS Human protein_coding chr8:27288507 chr8:27288527 nonsynonymous SNV 0.998 1 41 hm5C_associated_SNPs_21804 0 0 1 0 1 PTK2B chr8:27288533 5'GT 27288533 Upstream 7bp
chr9 6477715 6477715 1 + C A COAD 6477719 + 6477699 6477739 41 GGTGGGAAACATGAACCCAACATGCAGCTTCTGTGTGATGA GGTGGGAAACATGAACACAACATGCAGCTTCTGTGTGATGA < 41bp 1 0.244477966169168 1 0.10742861032486 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UHRF2 ENSG00000147854 CDS Human protein_coding chr9:6477719 chr9:6477715 nonsynonymous SNV 0.995 5 17 hm5C_associated_SNPs_21805 0 0 1 0 2 UHRF2 chr9:6477622 3'AG 6477622 Downstream 94bp
chr9 6477715 6477715 1 + C A COAD 6477719 + 6477699 6477739 41 GGTGGGAAACATGAACCCAACATGCAGCTTCTGTGTGATGA GGTGGGAAACATGAACACAACATGCAGCTTCTGTGTGATGA < 41bp 1 0.244477966169168 1 0.10742861032486 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UHRF2 ENSG00000147854 CDS Human protein_coding chr9:6477719 chr9:6477715 nonsynonymous SNV 0.995 5 17 hm5C_associated_SNPs_21805 0 0 1 0 2 UHRF2 chr9:6477808 5'GT 6477808 Upstream 94bp
chr9 139848656 139848656 1 + G T COAD 139848675 + 139848655 139848695 41 GGGCAGAGCTCAGGGCCTCTCGGATGACAACATCGTCTTCC GTGCAGAGCTCAGGGCCTCTCGGATGACAACATCGTCTTCC < 41bp 1 0.773653026245282 1 0.858181059360504 experiment 0.452693947509436 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control LCN12 ENSG00000184925 CDS Human protein_coding chr9:139848675 chr9:139848656 nonsynonymous SNV 0.003 2 2 hm5C_associated_SNPs_21806 0 0 0 0 2 LCN12 chr9:139848606 3'AG 139848606 Downstream 51bp
chr9 139848656 139848656 1 + G T COAD 139848675 + 139848655 139848695 41 GGGCAGAGCTCAGGGCCTCTCGGATGACAACATCGTCTTCC GTGCAGAGCTCAGGGCCTCTCGGATGACAACATCGTCTTCC < 41bp 1 0.773653026245282 1 0.858181059360504 experiment 0.452693947509436 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control LCN12 ENSG00000184925 CDS Human protein_coding chr9:139848675 chr9:139848656 nonsynonymous SNV 0.003 2 2 hm5C_associated_SNPs_21806 0 0 0 0 2 LCN12 chr9:139848707 5'GT 139848707 Upstream 52bp
chr2 127453545 127453545 1 + G A COAD 127453565 + 127453545 127453585 41 GTCCTAGTCTCCCTCCTCTTCGTCATGCTGCGCTACATGTA ATCCTAGTCTCCCTCCTCTTCGTCATGCTGCGCTACATGTA < 41bp 1 0.692709707064333 1 0.312312722206116 experiment 0.614580585871333 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control GYPC ENSG00000136732 CDS Human protein_coding chr2:127453565 chr2:127453545 nonsynonymous SNV 0.015 0 1 hm5C_associated_SNPs_21807 0 0 1 0 1 GYPC chr2:127453522 3'AG 127453522 Downstream 24bp
chr1 156105741 156105741 1 + G A COAD 156105721 + 156105701 156105741 41 AAGGAGGCGAAGCTTCGAGACCTGGAGGACTCACTGGCCCG AAGGAGGCGAAGCTTCGAGACCTGGAGGACTCACTGGCCCA < 41bp 1 0.365890492655439 1 0.288898766040802 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156105721 chr1:156105741 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_21808 1 0 1 0 1 LMNA chr1:156105692 3'AG 156105692 Downstream 50bp
chr1 156105741 156105741 1 + G A COAD 156105730 + 156105710 156105750 41 AAGCTTCGAGACCTGGAGGACTCACTGGCCCGTGAGCGGGA AAGCTTCGAGACCTGGAGGACTCACTGGCCCATGAGCGGGA < 41bp 1 0.278920808055111 1 0.168026775121689 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156105730 chr1:156105741 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_21809 1 0 1 0 1 LMNA chr1:156105692 3'AG 156105692 Downstream 50bp
chr10 102114305 102114305 1 + G A COAD 102114310 + 102114290 102114330 41 GTTGGCTGCTTGTGCGCAAACACCCAGCTGTCAAAGAGAAG GTTGGCTGCTTGTGCACAAACACCCAGCTGTCAAAGAGAAG < 41bp 1 0.449560189275971 1 0.0514573752880096 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCD ENSG00000099194 CDS Human protein_coding chr10:102114310 chr10:102114305 nonsynonymous SNV 0.998 4 16 hm5C_associated_SNPs_21810 0 0 1 0 1 SCD chr10:102114389 5'GT 102114389 Upstream 85bp
chr13 113719271 113719271 1 + A G COAD 113719251 + 113719231 113719271 41 TGTTTTCTCTGTCCCCAAGGCCATCGAAAGTTTCGCCCTCA TGTTTTCTCTGTCCCCAAGGCCATCGAAAGTTTCGCCCTCG < 41bp 1 0.0197521752215655 1 0.0925667881965637 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113719251 chr13:113719271 nonsynonymous SNV 0.273 1 41 hm5C_associated_SNPs_21811 0 0 0 0 1 MCF2L chr13:113719250 3'AG 113719250 Downstream 22bp
chr3 52245357 52245357 1 + C T COAD 52245356 + 52245336 52245376 41 CACGAGTTCTCTGATTGACACCGTACGGTCCTATGCTGCTG CACGAGTTCTCTGATTGACACTGTACGGTCCTATGCTGCTG < 41bp 1 0.687230551125436 1 0.185940980911255 experiment 0.625538897749128 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245356 chr3:52245357 synonymous SNV . 0 22 hm5C_associated_SNPs_21812 0 0 1 0 1 ALAS1 chr3:52245299 3'AG 52245299 Downstream 59bp
chr3 52245357 52245357 1 + C T COAD 52245361 + 52245341 52245381 41 GTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGGCTTC GTTCTCTGATTGACACTGTACGGTCCTATGCTGCTGGCTTC < 41bp 1 0.36378057664908 1 0.356512904167175 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245361 chr3:52245357 synonymous SNV . 0 17 hm5C_associated_SNPs_21813 0 0 1 0 1 ALAS1 chr3:52245299 3'AG 52245299 Downstream 59bp
chr1 22307647 22307647 1 + G A COAD 22307631 + 22307611 22307651 41 ACTCTGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCG ACTCTGGGGACCTCTTTGTGCATCCACTCTGGAACCACTCG < 41bp 1 0.0965074492888825 1 0.442067176103592 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307631 chr1:22307647 nonsynonymous SNV 0.000 1 37 hm5C_associated_SNPs_21814 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 19bp
chr1 22307647 22307647 1 + G A COAD 22307634 + 22307614 22307654 41 CTGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGT CTGGGGACCTCTTTGTGCATCCACTCTGGAACCACTCGTGT < 41bp 1 0.115234156883008 1 0.0504336655139923 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307634 chr1:22307647 nonsynonymous SNV 0.000 1 34 hm5C_associated_SNPs_21815 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 19bp
chr1 22307647 22307647 1 + G A COAD 22307635 + 22307615 22307655 41 TGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTG TGGGGACCTCTTTGTGCATCCACTCTGGAACCACTCGTGTG < 41bp 1 0.136963561272658 1 0.0694879591464996 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307635 chr1:22307647 nonsynonymous SNV 0.000 1 33 hm5C_associated_SNPs_21816 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 19bp
chr1 22307647 22307647 1 + G A COAD 22307637 + 22307617 22307657 41 GGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG GGGACCTCTTTGTGCATCCACTCTGGAACCACTCGTGTGTG < 41bp 1 0.317903382794619 1 0.0936289727687836 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307637 chr1:22307647 nonsynonymous SNV 0.000 1 31 hm5C_associated_SNPs_21817 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 19bp
chr1 22307647 22307647 1 + G A COAD 22307639 + 22307619 22307659 41 GACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTGTGGC GACCTCTTTGTGCATCCACTCTGGAACCACTCGTGTGTGGC < 41bp 1 0.645502206331175 1 0.80822741985321 experiment 0.708995587337651 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307639 chr1:22307647 nonsynonymous SNV 0.000 1 29 hm5C_associated_SNPs_21818 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 19bp
chr1 22307647 22307647 1 + G A COAD 22307645 + 22307625 22307665 41 TTTGTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGG TTTGTGCATCCACTCTGGAACCACTCGTGTGTGGCCTGTGG < 41bp 1 0.0662663348742613 1 0.0281187891960144 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307645 chr1:22307647 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_21819 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 19bp
chr1 22307647 22307647 1 + G A COAD 22307646 + 22307626 22307666 41 TTGTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGGG TTGTGCATCCACTCTGGAACCACTCGTGTGTGGCCTGTGGG < 41bp 1 0.15342869789838 1 0.12420192360878 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307646 chr1:22307647 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_21820 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 19bp
chr1 22307647 22307647 1 + G A COAD 22307648 + 22307628 22307668 41 GTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGGGTG GTGCATCCACTCTGGAACCACTCGTGTGTGGCCTGTGGGTG < 41bp 1 0.492968595046055 1 0.319446116685867 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307648 chr1:22307647 nonsynonymous SNV 0.000 1 20 hm5C_associated_SNPs_21821 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 19bp
chr22 23615298 23615298 1 + C T COAD 23615317 + 23615297 23615337 41 ACGAGGAGCACGCTGGTCCTCCATGTAAGTCACAGCGCCCC ATGAGGAGCACGCTGGTCCTCCATGTAAGTCACAGCGCCCC < 41bp 1 0.170813258154678 1 0.0878108441829681 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23615317 chr22:23615298 nonsynonymous SNV 0.855 3 2 hm5C_associated_SNPs_21823 0 0 1 0 2 BCR chr22:23615268 3'AG 23615268 Downstream 31bp
chr22 23615298 23615298 1 + C T COAD 23615317 + 23615297 23615337 41 ACGAGGAGCACGCTGGTCCTCCATGTAAGTCACAGCGCCCC ATGAGGAGCACGCTGGTCCTCCATGTAAGTCACAGCGCCCC < 41bp 1 0.170813258154678 1 0.0878108441829681 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23615317 chr22:23615298 nonsynonymous SNV 0.855 3 2 hm5C_associated_SNPs_21823 0 0 1 0 2 BCR chr22:23615320 5'GT 23615320 Upstream 23bp
chr16 31131779 31131779 1 + C T COAD 31131787 + 31131767 31131807 41 GAGCAGCCTGAGCGCAAGATCACTCGCAACCAAAAGCGCAA GAGCAGCCTGAGTGCAAGATCACTCGCAACCAAAAGCGCAA < 41bp 1 0.26886360007624 1 0.0538331568241119 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KAT8 ENSG00000103510 CDS Human protein_coding chr16:31131787 chr16:31131779 nonsynonymous SNV 0.994 3 13 hm5C_associated_SNPs_21824 0 0 1 0 1 KAT8 chr16:31131835 5'GT 31131835 Upstream 57bp
chr16 697855 697855 1 + T C COAD 697836 + 697816 697856 41 GCCCAGCCGGTGAGGGCGGGCCAAGGCCTGTGCAGTACGTG GCCCAGCCGGTGAGGGCGGGCCAAGGCCTGTGCAGTACGCG < 41bp 1 0.154387248548178 1 0.350325644016266 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MCRIP2 ENSG00000172366 CDS Human protein_coding chr16:697836 chr16:697855 nonsynonymous SNV 0.984 0 40 hm5C_associated_SNPs_21825 0 0 1 0 1 MCRIP2 chr16:697783 3'AG 697783 Downstream 73bp
chr16 697855 697855 1 + T C COAD 697837 + 697817 697857 41 CCCAGCCGGTGAGGGCGGGCCAAGGCCTGTGCAGTACGTGG CCCAGCCGGTGAGGGCGGGCCAAGGCCTGTGCAGTACGCGG < 41bp 1 0.700279715532955 1 0.692773461341858 experiment 0.59944056893409 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MCRIP2 ENSG00000172366 CDS Human protein_coding chr16:697837 chr16:697855 nonsynonymous SNV 0.984 0 39 hm5C_associated_SNPs_21826 0 0 1 0 1 MCRIP2 chr16:697783 3'AG 697783 Downstream 73bp
chr2 75081444 75081444 1 + C T COAD 75081425 + 75081405 75081445 41 TTCCTCCTTTTTCAGGTTGACCAGTATCTCTACCACATGCG TTCCTCCTTTTTCAGGTTGACCAGTATCTCTACCACATGTG < 41bp 1 0.0941316991035289 1 0.0798017084598541 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HK2 ENSG00000159399 CDS Human protein_coding chr2:75081425 chr2:75081444 nonsynonymous SNV 0.998 4 40 hm5C_associated_SNPs_21827 0 0 1 0 1 HK2 chr2:75081420 3'AG 75081420 Downstream 25bp
chr3 184102457 184102457 1 + T C COAD 184102443 + 184102423 184102463 41 AGAGCTTCGGGGGCACGTGGCTGCCCTGCCCTACTGTGGGC AGAGCTTCGGGGGCACGTGGCTGCCCTGCCCTACCGTGGGC < 41bp 1 0.375077243498891 1 0.144035249948502 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHRD ENSG00000090539 CDS Human protein_coding chr3:184102443 chr3:184102457 nonsynonymous SNV 0.994 2 35 hm5C_associated_SNPs_21828 0 0 1 0 1 CHRD chr3:184102481 5'GT 184102481 Upstream 25bp
chr18 77457893 77457893 1 + C T COAD 77457896 + 77457876 77457916 41 GAAGAGAAGACCAGCAGCGACTGCACCGAAACCGGAAGCTG GAAGAGAAGACCAGCAGTGACTGCACCGAAACCGGAAGCTG < 41bp 1 0.714899076527104 1 0.747507691383362 experiment 0.570201846945792 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77457896 chr18:77457893 stopgain 0.886 1 18 hm5C_associated_SNPs_21830 0 0 0 0 2 CTDP1 chr18:77457860 3'AG 77457860 Downstream 34bp
chr18 77457893 77457893 1 + C T COAD 77457896 + 77457876 77457916 41 GAAGAGAAGACCAGCAGCGACTGCACCGAAACCGGAAGCTG GAAGAGAAGACCAGCAGTGACTGCACCGAAACCGGAAGCTG < 41bp 1 0.714899076527104 1 0.747507691383362 experiment 0.570201846945792 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77457896 chr18:77457893 stopgain 0.886 1 18 hm5C_associated_SNPs_21830 0 0 0 0 2 CTDP1 chr18:77457988 5'GT 77457988 Upstream 96bp
chr16 67914066 67914066 1 + C T COAD 67914050 + 67914030 67914070 41 AGTGGCAGCCTTCAGGCAAGCCCGCGTGGCCTCCTGCCTGG AGTGGCAGCCTTCAGGCAAGCCCGCGTGGCCTCCTGTCTGG < 41bp 1 0.600906242434176 1 0.122797429561615 experiment 0.798187515131647 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914050 chr16:67914066 nonsynonymous SNV 0.003 0 37 hm5C_associated_SNPs_21831 0 0 1 0 1 EDC4 chr16:67914119 5'GT 67914119 Upstream 54bp
chr17 38151735 38151735 1 + G A COAD 38151726 + 38151706 38151746 41 CGAATCTCCTTGGCTGACATCGCCCAGAAGCTGCAGTTGGA CGAATCTCCTTGGCTGACATCGCCCAGAAACTGCAGTTGGA < 41bp 1 0.32261942203456 1 0.500120043754578 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38151726 chr17:38151735 synonymous SNV . 0 30 hm5C_associated_SNPs_21832 0 0 1 0 2 PSMD3 chr17:38151677 3'AG 38151677 Downstream 59bp
chr17 38151735 38151735 1 + G A COAD 38151726 + 38151706 38151746 41 CGAATCTCCTTGGCTGACATCGCCCAGAAGCTGCAGTTGGA CGAATCTCCTTGGCTGACATCGCCCAGAAACTGCAGTTGGA < 41bp 1 0.32261942203456 1 0.500120043754578 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38151726 chr17:38151735 synonymous SNV . 0 30 hm5C_associated_SNPs_21832 0 0 1 0 2 PSMD3 chr17:38151780 5'GT 38151780 Upstream 46bp
chr12 69115898 69115898 1 + A G COAD 69115884 + 69115864 69115904 41 TCCCGTTGTTTCTTTTGAAGCTGGACGTTAGAAAAGGTTTT TCCCGTTGTTTCTTTTGAAGCTGGACGTTAGAAAGGGTTTT < 41bp 1 0.71249193935613 1 0.152739256620407 experiment 0.57501612128774 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69115884 chr12:69115898 nonsynonymous SNV 0.977 1 35 hm5C_associated_SNPs_21833 0 0 1 0 2 NUP107 chr12:69115884 3'AG 69115884 Downstream 15bp
chr12 69115898 69115898 1 + A G COAD 69115884 + 69115864 69115904 41 TCCCGTTGTTTCTTTTGAAGCTGGACGTTAGAAAAGGTTTT TCCCGTTGTTTCTTTTGAAGCTGGACGTTAGAAAGGGTTTT < 41bp 1 0.71249193935613 1 0.152739256620407 experiment 0.57501612128774 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69115884 chr12:69115898 nonsynonymous SNV 0.977 1 35 hm5C_associated_SNPs_21833 0 0 1 0 2 NUP107 chr12:69115932 5'GT 69115932 Upstream 35bp
chr11 65403956 65403956 1 + G A COAD 65403939 + 65403919 65403959 41 GTGGCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGG GTGGCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAATGG < 41bp 1 0.0467409918445074 1 0.210631191730499 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403939 chr11:65403956 synonymous SNV . 0 38 hm5C_associated_SNPs_21838 0 0 1 0 1 PCNX3 chr11:65403862 3'AG 65403862 Downstream 95bp
chr11 65403956 65403956 1 + G A COAD 65403940 + 65403920 65403960 41 TGGCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGC TGGCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAATGGC < 41bp 1 0.145006249451805 1 0.386810302734375 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403940 chr11:65403956 synonymous SNV . 0 37 hm5C_associated_SNPs_21839 0 0 1 0 1 PCNX3 chr11:65403862 3'AG 65403862 Downstream 95bp
chr11 65403956 65403956 1 + G A COAD 65403941 + 65403921 65403961 41 GGCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCC GGCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAATGGCC < 41bp 1 0.0531257420592098 1 0.157098263502121 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403941 chr11:65403956 synonymous SNV . 0 36 hm5C_associated_SNPs_21840 0 0 1 0 1 PCNX3 chr11:65403862 3'AG 65403862 Downstream 95bp
chr11 65403956 65403956 1 + G A COAD 65403942 + 65403922 65403962 41 GCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCCT GCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAATGGCCT < 41bp 1 0.070924923828129 1 0.182521909475327 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403942 chr11:65403956 synonymous SNV . 0 35 hm5C_associated_SNPs_21841 0 0 1 0 1 PCNX3 chr11:65403862 3'AG 65403862 Downstream 95bp
chr11 65403956 65403956 1 + G A COAD 65403943 + 65403923 65403963 41 CTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCCTC CTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAATGGCCTC < 41bp 1 0.293570003064381 1 0.346371620893478 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403943 chr11:65403956 synonymous SNV . 0 34 hm5C_associated_SNPs_21842 0 0 1 0 1 PCNX3 chr11:65403862 3'AG 65403862 Downstream 95bp
chr1 10479771 10479771 1 + G A DLBC 10479787 + 10479767 10479807 41 CCATGGTGGCACCGTGTCATCCTCGTCATACAATGCCTGAT CCATAGTGGCACCGTGTCATCCTCGTCATACAATGCCTGAT < 41bp 1 0.252297172914782 1 0.0704939663410187 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PGD ENSG00000142657 CDS Human protein_coding chr1:10479787 chr1:10479771 nonsynonymous SNV 0.809 4 5 hm5C_associated_SNPs_21849 0 0 1 0 1 PGD chr1:10479687 3'AG 10479687 Downstream 85bp
chr2 27456274 27456274 1 + G A DLBC 27456273 + 27456253 27456293 41 ACATGGCCATGGCGTTGCATCGGCAGCAGTGCCGGGTGCTG ACATGGCCATGGCGTTGCATCAGCAGCAGTGCCGGGTGCTG < 41bp 1 0.744062100305495 1 0.608198881149292 experiment 0.511875799389009 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27456273 chr2:27456274 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_21850 0 0 1 0 1 CAD chr2:27456180 3'AG 27456180 Downstream 95bp
chr8 38899582 38899582 1 + C A DLBC 38899577 + 38899557 38899597 41 CTGATGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTG CTGATGAAGCCTATAGTGCTCCCTCATGTGGTAATAAGTTG < 41bp 1 0.110068948419507 1 0.141840428113937 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38899577 chr8:38899582 synonymous SNV . 0 26 hm5C_associated_SNPs_21852 0 0 1 0 1 ADAM9 chr8:38899636 5'GT 38899636 Upstream 55bp
chr8 38899582 38899582 1 + C A DLBC 38899581 + 38899561 38899601 41 TGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTGGTGG TGAAGCCTATAGTGCTCCCTCATGTGGTAATAAGTTGGTGG < 41bp 1 0.380547083099482 1 0.476463288068771 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38899581 chr8:38899582 synonymous SNV . 0 22 hm5C_associated_SNPs_21853 0 0 1 0 1 ADAM9 chr8:38899636 5'GT 38899636 Upstream 55bp
chr3 183855505 183855505 1 + G T DLBC 183855522 + 183855502 183855542 41 GATGCCAAGGCTTTGGTGCGCTCTGACTTTCTTCTGGTGTA GATTCCAAGGCTTTGGTGCGCTCTGACTTTCTTCTGGTGTA < 41bp 1 0.414598883231567 1 0.0832209289073944 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183855522 chr3:183855505 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_21854 0 0 1 0 2 EIF2B5 chr3:183855408 3'AG 183855408 Downstream 98bp
chr3 183855505 183855505 1 + G T DLBC 183855522 + 183855502 183855542 41 GATGCCAAGGCTTTGGTGCGCTCTGACTTTCTTCTGGTGTA GATTCCAAGGCTTTGGTGCGCTCTGACTTTCTTCTGGTGTA < 41bp 1 0.414598883231567 1 0.0832209289073944 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183855522 chr3:183855505 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_21854 0 0 1 0 2 EIF2B5 chr3:183855593 5'GT 183855593 Upstream 89bp
chr7 129064932 129064932 1 + C T DLBC 129064943 + 129064923 129064963 41 TTTACAATGCTCCTGAGGGTCGCTATAAGCAGGATGTCTAC TTTACAATGTTCCTGAGGGTCGCTATAAGCAGGATGTCTAC < 41bp 1 0.598371672676699 1 0.485393553972244 experiment 0.803256654646601 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064943 chr7:129064932 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_21855 0 0 0 0 2 AHCYL2 chr7:129064904 3'AG 129064904 Downstream 29bp
chr7 129064932 129064932 1 + C T DLBC 129064943 + 129064923 129064963 41 TTTACAATGCTCCTGAGGGTCGCTATAAGCAGGATGTCTAC TTTACAATGTTCCTGAGGGTCGCTATAAGCAGGATGTCTAC < 41bp 1 0.598371672676699 1 0.485393553972244 experiment 0.803256654646601 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064943 chr7:129064932 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_21855 0 0 0 0 2 AHCYL2 chr7:129064982 5'GT 129064982 Upstream 51bp
chr19 40711082 40711082 1 + G A DLBC 40711074 + 40711054 40711094 41 CGGCCAGATTTCGGTAGCATCTTGAAGCGGCTTGAAGTCAT CGGCCAGATTTCGGTAGCATCTTGAAGCAGCTTGAAGTCAT < 41bp 1 0.510553242959567 1 0.721762299537659 experiment 0.978893514080865 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40711074 chr19:40711082 nonsynonymous SNV 0.978 1 29 hm5C_associated_SNPs_21863 0 0 1 0 1 MAP3K10 chr19:40711028 3'AG 40711028 Downstream 55bp
chr5 139917069 139917069 1 + C T DLBC 139917055 + 139917035 139917075 41 GATACCTCCCCCAATTGGAACAGAGAGACTGGCCCGAATTC GATACCTCCCCCAATTGGAACAGAGAGACTGGCCTGAATTC < 41bp 1 0.287320946357742 1 0.518351256847382 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139917055 chr5:139917069 stopgain 0.996 1 35 hm5C_associated_SNPs_21864 0 0 1 0 1 ANKHD1;ANKHD1-EIF4EBP3 chr5:139916974 3'AG 139916974 Downstream 96bp
chr19 36218067 36218067 1 + C T DLBC 36218061 + 36218041 36218081 41 TCTTCCCTTTCTCTAGGAAACTACTGCCCGATCTGTACACG TCTTCCCTTTCTCTAGGAAACTACTGTCCGATCTGTACACG < 41bp 1 0.128395328979995 1 0.146018832921982 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36218061 chr19:36218067 synonymous SNV . 0 27 hm5C_associated_SNPs_21867 0 0 1 0 1 KMT2B chr19:36218057 3'AG 36218057 Downstream 11bp
chr19 36218067 36218067 1 + C T DLBC 36218064 + 36218044 36218084 41 TCCCTTTCTCTAGGAAACTACTGCCCGATCTGTACACGCTG TCCCTTTCTCTAGGAAACTACTGTCCGATCTGTACACGCTG < 41bp 1 0.0316365943510925 1 0.0634905397891998 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36218064 chr19:36218067 synonymous SNV . 0 24 hm5C_associated_SNPs_21868 0 0 1 0 1 KMT2B chr19:36218057 3'AG 36218057 Downstream 11bp
chr11 6629314 6629314 1 + G A DLBC 6629294 + 6629274 6629314 41 AGGGACGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCCG AGGGACGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCCA < 41bp 1 0.197427596606697 1 0.142735838890076 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6629294 chr11:6629314 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_21869 0 0 1 0 1 ILK chr11:6629276 3'AG 6629276 Downstream 39bp
chr19 10571742 10571742 1 + T A DLBC 10571761 + 10571741 10571781 41 ATCACCCTGGGGTCTCCAACCAGTTCCTCATCAACACCAGT AACACCCTGGGGTCTCCAACCAGTTCCTCATCAACACCAGT < 41bp 1 0.110908464941886 1 0.452166050672531 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10571761 chr19:10571742 nonsynonymous SNV 0.995 4 2 hm5C_associated_SNPs_21870 0 0 0 0 2 PDE4A chr19:10571680 3'AG 10571680 Downstream 63bp
chr19 10571742 10571742 1 + T A DLBC 10571761 + 10571741 10571781 41 ATCACCCTGGGGTCTCCAACCAGTTCCTCATCAACACCAGT AACACCCTGGGGTCTCCAACCAGTTCCTCATCAACACCAGT < 41bp 1 0.110908464941886 1 0.452166050672531 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10571761 chr19:10571742 nonsynonymous SNV 0.995 4 2 hm5C_associated_SNPs_21870 0 0 0 0 2 PDE4A chr19:10571779 5'GT 10571779 Upstream 38bp
chr16 57171163 57171163 1 + C G DLBC 57171175 + 57171155 57171195 41 CCGGTTTGCGGCCCAGGCCACACAACAGCGGACGGCCACGG CCGGTTTGGGGCCCAGGCCACACAACAGCGGACGGCCACGG < 41bp 1 0.689204619476191 1 0.340458512306213 experiment 0.621590761047618 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57171175 chr16:57171163 nonsynonymous SNV 0.971 4 9 hm5C_associated_SNPs_21871 0 0 1 0 1 CPNE2 chr16:57171194 5'GT 57171194 Upstream 32bp
chr19 46878959 46878959 1 + C T DLBC 46878977 + 46878957 46878997 41 GGCGACGAGCACAAGCGCTCCGTGGTGGACTCGCTGGACAT GGTGACGAGCACAAGCGCTCCGTGGTGGACTCGCTGGACAT < 41bp 1 0.564572098683584 1 0.522122383117676 experiment 0.870855802632832 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46878977 chr19:46878959 synonymous SNV . 0 3 hm5C_associated_SNPs_21872 0 0 1 0 2 PPP5C chr19:46878861 3'AG 46878861 Downstream 99bp
chr19 46878959 46878959 1 + C T DLBC 46878977 + 46878957 46878997 41 GGCGACGAGCACAAGCGCTCCGTGGTGGACTCGCTGGACAT GGTGACGAGCACAAGCGCTCCGTGGTGGACTCGCTGGACAT < 41bp 1 0.564572098683584 1 0.522122383117676 experiment 0.870855802632832 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46878977 chr19:46878959 synonymous SNV . 0 3 hm5C_associated_SNPs_21872 0 0 1 0 2 PPP5C chr19:46879008 5'GT 46879008 Upstream 50bp
chr22 20079074 20079074 1 + C T DLBC 20079093 + 20079073 20079113 41 GCAGGCGGAGTCCGAGAGGCCCATCTTGCCAGCCAATCAGA GTAGGCGGAGTCCGAGAGGCCCATCTTGCCAGCCAATCAGA < 41bp 1 0.0577504799900684 1 0.102650672197342 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGCR8 ENSG00000128191 CDS Human protein_coding chr22:20079093 chr22:20079074 stopgain 0.986 1 2 hm5C_associated_SNPs_21873 0 0 1 0 1 DGCR8 chr22:20079155 5'GT 20079155 Upstream 82bp
chr1 116206843 116206843 1 + C T DLBC 116206847 + 116206827 116206867 41 CACGCTGCAGGTGGTCCGCTCCACCGATGGCGAGTCCCGCT CACGCTGCAGGTGGTCTGCTCCACCGATGGCGAGTCCCGCT < 41bp 1 0.231687245676976 1 0.106278896331787 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VANGL1 ENSG00000173218 CDS Human protein_coding chr1:116206847 chr1:116206843 nonsynonymous SNV 0.995 5 17 hm5C_associated_SNPs_21874 0 0 0 0 1 VANGL1 chr1:116206889 5'GT 116206889 Upstream 47bp
chr17 28766060 28766060 1 + G A DLBC 28766053 + 28766033 28766073 41 TGTATCCTAATGAATATTTTCCTCATGGAATAACAAATGGA TGTATCCTAATGAATATTTTCCTCATGAAATAACAAATGGA < 41bp 1 0.0974410682868526 1 0.296499133110046 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28766053 chr17:28766060 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_21877 0 0 1 0 2 CPD chr17:28765993 3'AG 28765993 Downstream 68bp
chr17 28766060 28766060 1 + G A DLBC 28766053 + 28766033 28766073 41 TGTATCCTAATGAATATTTTCCTCATGGAATAACAAATGGA TGTATCCTAATGAATATTTTCCTCATGAAATAACAAATGGA < 41bp 1 0.0974410682868526 1 0.296499133110046 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28766053 chr17:28766060 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_21877 0 0 1 0 2 CPD chr17:28766095 5'GT 28766095 Upstream 36bp
chr9 80942972 80942972 1 + C T DLBC 80942983 + 80942963 80943003 41 TCAGTTGTCCAGTGGAGCCCCAAAATAGAAGCAAGATGAAT TCAGTTGTCTAGTGGAGCCCCAAAATAGAAGCAAGATGAAT < 41bp 1 0.407638677365545 1 0.418498247861862 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80942983 chr9:80942972 nonsynonymous SNV 0.905 3 10 hm5C_associated_SNPs_21878 0 0 1 0 1 PSAT1 chr9:80942967 3'AG 80942967 Downstream 6bp
chr11 47600867 47600867 1 + C T DLBC 47600875 + 47600855 47600895 41 GAGGCGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATG GAGGCGGGAGAGTGCCGGGGCCGACACGCGCCGTGAGTATG < 41bp 1 0.0901457766753647 1 0.126409322023392 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600875 chr11:47600867 synonymous SNV . 0 13 hm5C_associated_SNPs_21879 0 0 1 0 2 NDUFS3 chr11:47600821 3'AG 47600821 Downstream 47bp
chr11 47600867 47600867 1 + C T DLBC 47600875 + 47600855 47600895 41 GAGGCGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATG GAGGCGGGAGAGTGCCGGGGCCGACACGCGCCGTGAGTATG < 41bp 1 0.0901457766753647 1 0.126409322023392 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600875 chr11:47600867 synonymous SNV . 0 13 hm5C_associated_SNPs_21879 0 0 1 0 2 NDUFS3 chr11:47600886 5'GT 47600886 Upstream 20bp
chr11 47600867 47600867 1 + C T DLBC 47600876 + 47600856 47600896 41 AGGCGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATGT AGGCGGGAGAGTGCCGGGGCCGACACGCGCCGTGAGTATGT < 41bp 1 0.766948943555594 1 0.314371943473816 experiment 0.466102112888812 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600876 chr11:47600867 synonymous SNV . 0 12 hm5C_associated_SNPs_21880 0 0 1 0 2 NDUFS3 chr11:47600821 3'AG 47600821 Downstream 47bp
chr11 47600867 47600867 1 + C T DLBC 47600876 + 47600856 47600896 41 AGGCGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATGT AGGCGGGAGAGTGCCGGGGCCGACACGCGCCGTGAGTATGT < 41bp 1 0.766948943555594 1 0.314371943473816 experiment 0.466102112888812 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600876 chr11:47600867 synonymous SNV . 0 12 hm5C_associated_SNPs_21880 0 0 1 0 2 NDUFS3 chr11:47600886 5'GT 47600886 Upstream 20bp
chr11 47600867 47600867 1 + C T DLBC 47600885 + 47600865 47600905 41 AGCGCCGGGGCCGACACGCGCCGTGAGTATGTGCGGGCAGC AGTGCCGGGGCCGACACGCGCCGTGAGTATGTGCGGGCAGC < 41bp 1 0.292460624938251 1 0.0927632749080658 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600885 chr11:47600867 synonymous SNV . 0 3 hm5C_associated_SNPs_21881 0 0 1 0 2 NDUFS3 chr11:47600821 3'AG 47600821 Downstream 47bp
chr11 47600867 47600867 1 + C T DLBC 47600885 + 47600865 47600905 41 AGCGCCGGGGCCGACACGCGCCGTGAGTATGTGCGGGCAGC AGTGCCGGGGCCGACACGCGCCGTGAGTATGTGCGGGCAGC < 41bp 1 0.292460624938251 1 0.0927632749080658 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600885 chr11:47600867 synonymous SNV . 0 3 hm5C_associated_SNPs_21881 0 0 1 0 2 NDUFS3 chr11:47600886 5'GT 47600886 Upstream 20bp
chr11 47600867 47600867 1 + C T DLBC 47600886 + 47600866 47600906 41 GCGCCGGGGCCGACACGCGCCGTGAGTATGTGCGGGCAGCG GTGCCGGGGCCGACACGCGCCGTGAGTATGTGCGGGCAGCG < 41bp 1 0.732459651378214 1 0.146098703145981 experiment 0.535080697243572 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600886 chr11:47600867 synonymous SNV . 0 2 hm5C_associated_SNPs_21882 0 0 1 0 2 NDUFS3 chr11:47600821 3'AG 47600821 Downstream 47bp
chr11 47600867 47600867 1 + C T DLBC 47600886 + 47600866 47600906 41 GCGCCGGGGCCGACACGCGCCGTGAGTATGTGCGGGCAGCG GTGCCGGGGCCGACACGCGCCGTGAGTATGTGCGGGCAGCG < 41bp 1 0.732459651378214 1 0.146098703145981 experiment 0.535080697243572 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600886 chr11:47600867 synonymous SNV . 0 2 hm5C_associated_SNPs_21882 0 0 1 0 2 NDUFS3 chr11:47600886 5'GT 47600886 Upstream 20bp
chr7 33014897 33014897 1 + G A DLBC 33014888 + 33014868 33014908 41 GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCG GTTCAGATTCACACCTATTTCAAGCCCCCAAGTTGCCCTCG < 41bp 1 0.522378243752995 1 0.765441238880157 experiment 0.95524351249401 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014888 chr7:33014897 synonymous SNV . 0 30 hm5C_associated_SNPs_21883 0 0 0 0 1 FKBP9 chr7:33014983 5'GT 33014983 Upstream 87bp
chr7 33014897 33014897 1 + G A DLBC 33014892 + 33014872 33014912 41 AGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCGGACC AGATTCACACCTATTTCAAGCCCCCAAGTTGCCCTCGGACC < 41bp 1 0.0625762374516001 1 0.0628682374954224 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014892 chr7:33014897 synonymous SNV . 0 26 hm5C_associated_SNPs_21884 0 0 0 0 1 FKBP9 chr7:33014983 5'GT 33014983 Upstream 87bp
chr2 202141597 202141597 1 + T A DLBC 202141594 + 202141574 202141614 41 AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAATCA AAAAGCAAACCTCGGGGATACTGACTGATCATCAACAATCA < 41bp 1 0.377242378943362 1 0.228742122650146 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CASP8 ENSG00000064012 CDS Human protein_coding chr2:202141594 chr2:202141597 stopgain 0.993 0 24 hm5C_associated_SNPs_21885 0 0 1 1 1 CASP8 chr2:202141550 3'AG 202141550 Downstream 48bp
chr2 109367754 109367754 1 + C T DLBC 109367752 + 109367732 109367772 41 CACATAATGGTAGTCTTCAGCACCTTACTTGGCTTGGCTTA CACATAATGGTAGTCTTCAGCATCTTACTTGGCTTGGCTTA < 41bp 1 0.121355272882988 1 0.233026504516602 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109367752 chr2:109367754 synonymous SNV . 0 23 hm5C_associated_SNPs_21886 0 0 0 0 1 RANBP2 chr2:109367720 3'AG 109367720 Downstream 35bp
chr22 26291160 26291160 1 + G A DLBC 26291140 + 26291120 26291160 41 CAGCAGACGAGTGGCAGATGCGCTTCGACTGTGCTCAGATG CAGCAGACGAGTGGCAGATGCGCTTCGACTGTGCTCAGATA < 41bp 1 0.0888763790093249 1 0.341787844896317 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26291140 chr22:26291160 nonsynonymous SNV 0.999 0 41 hm5C_associated_SNPs_21887 0 0 1 0 3 MYO18B chr22:26291123 3'AG 26291123 Downstream 38bp
chr22 26291160 26291160 1 + G A DLBC 26291140 + 26291120 26291160 41 CAGCAGACGAGTGGCAGATGCGCTTCGACTGTGCTCAGATG CAGCAGACGAGTGGCAGATGCGCTTCGACTGTGCTCAGATA < 41bp 1 0.0888763790093249 1 0.341787844896317 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26291140 chr22:26291160 nonsynonymous SNV 0.999 0 41 hm5C_associated_SNPs_21887 0 0 1 0 3 MYO18B chr22:26291126 3'AG 26291126 Downstream 35bp
chr22 26291160 26291160 1 + G A DLBC 26291140 + 26291120 26291160 41 CAGCAGACGAGTGGCAGATGCGCTTCGACTGTGCTCAGATG CAGCAGACGAGTGGCAGATGCGCTTCGACTGTGCTCAGATA < 41bp 1 0.0888763790093249 1 0.341787844896317 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26291140 chr22:26291160 nonsynonymous SNV 0.999 0 41 hm5C_associated_SNPs_21887 0 0 1 0 3 MYO18B chr22:26291247 5'GT 26291247 Upstream 88bp
chr4 155665953 155665953 1 + A C DLBC 155665967 + 155665947 155665987 41 CTGTGGAACAACTGCGAGCACTTCGTGACCTACTGCAGATA CTGTGGCACAACTGCGAGCACTTCGTGACCTACTGCAGATA < 41bp 1 0.356251098487465 1 0.104438066482544 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRAT ENSG00000121207 CDS Human protein_coding chr4:155665967 chr4:155665953 nonsynonymous SNV 0.998 1 7 hm5C_associated_SNPs_21889 0 0 0 0 1 LRAT chr4:155666018 5'GT 155666018 Upstream 66bp
chr1 22835092 22835092 1 + G T DLBC 22835072 + 22835052 22835092 41 TGGTTCAGGTGGTTTCAATTCTCTGATATCAGCAGTTCTAG TGGTTCAGGTGGTTTCAATTCTCTGATATCAGCAGTTCTAT < 41bp 1 0.404460496027855 1 0.559640944004059 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22835072 chr1:22835092 stopgain 0.997 1 41 hm5C_associated_SNPs_21890 0 0 1 0 1 ZBTB40 chr1:22835023 3'AG 22835023 Downstream 70bp
chr20 62521256 62521256 1 + G A DLBC 62521246 + 62521226 62521266 41 GAACGGCAGTGACAACCTCCCTTCCTCAGCGGGGAGTGGTG GAACGGCAGTGACAACCTCCCTTCCTCAGCAGGGAGTGGTG < 41bp 1 0.255565573749034 1 0.0535944104194641 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TPD52L2 ENSG00000101150 CDS Human protein_coding chr20:62521246 chr20:62521256 synonymous SNV 0.004 0 31 hm5C_associated_SNPs_21893 0 0 1 0 1 TPD52L2 chr20:62521203 3'AG 62521203 Downstream 54bp
chr1 155288031 155288031 1 + C T DLBC 155288044 + 155288024 155288064 41 TGAAGCTCTATTGCCGGGAGCAGCCCTATTACCTGAACCTG TGAAGCTTTATTGCCGGGAGCAGCCCTATTACCTGAACCTG < 41bp 1 0.302804959387091 1 0.216095685958862 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155288044 chr1:155288031 synonymous SNV . 0 8 hm5C_associated_SNPs_21894 0 0 1 0 2 FDPS chr1:155287960 3'AG 155287960 Downstream 72bp
chr1 155288031 155288031 1 + C T DLBC 155288044 + 155288024 155288064 41 TGAAGCTCTATTGCCGGGAGCAGCCCTATTACCTGAACCTG TGAAGCTTTATTGCCGGGAGCAGCCCTATTACCTGAACCTG < 41bp 1 0.302804959387091 1 0.216095685958862 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155288044 chr1:155288031 synonymous SNV . 0 8 hm5C_associated_SNPs_21894 0 0 1 0 2 FDPS chr1:155288082 5'GT 155288082 Upstream 52bp
chr10 60549152 60549152 1 + G A DLBC 60549151 + 60549131 60549171 41 TTTCAGTATCATTTAAACAGCGTTCCCGAATGTATGGTGCT TTTCAGTATCATTTAAACAGCATTCCCGAATGTATGGTGCT < 41bp 1 0.00963085707602562 1 0.0253060758113861 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60549151 chr10:60549152 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_21895 0 0 1 0 1 BICC1 chr10:60549216 5'GT 60549216 Upstream 65bp
chr22 26242205 26242205 1 + C T DLBC 26242222 + 26242202 26242242 41 TGCCGCGGTGAGGAGGAAAGCCCCGTGCTCCCAGATCAAGC TGCTGCGGTGAGGAGGAAAGCCCCGTGCTCCCAGATCAAGC < 41bp 1 0.307250864998261 1 0.202112942934036 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26242222 chr22:26242205 synonymous SNV . 0 4 hm5C_associated_SNPs_21896 0 0 0 0 1 MYO18B chr22:26242250 5'GT 26242250 Upstream 46bp
chr7 102937911 102937911 1 + C T DLBC 102937920 + 102937900 102937940 41 AGCAGAAATGGCGGCTGCGGCGGCTCGAGTGGTGTTGTCAT AGCAGAAATGGTGGCTGCGGCGGCTCGAGTGGTGTTGTCAT < 41bp 1 0.659003044488857 1 0.760976493358612 experiment 0.681993911022285 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PMPCB ENSG00000105819 CDS Human protein_coding chr7:102937920 chr7:102937911 nonsynonymous SNV 0.755 1 12 hm5C_associated_SNPs_21904 0 0 1 0 1 PMPCB chr7:102938005 5'GT 102938005 Upstream 95bp
chr4 103806567 103806567 1 + A T DLBC 103806576 + 103806556 103806596 41 CAGCTTATTGTAGGTGTTGGCGTTCTAAAACGGTAAGATGT CAGCTTATTGTTGGTGTTGGCGTTCTAAAACGGTAAGATGT < 41bp 1 0.0770756279908166 1 0.483580112457275 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CISD2 ENSG00000145354 CDS Human protein_coding chr4:103806576 chr4:103806567 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_21908 0 0 1 0 1 CISD2 chr4:103806587 5'GT 103806587 Upstream 21bp
chr5 177565199 177565199 1 + C T DLBC 177565214 + 177565194 177565234 41 GTGAGCGGAGCCTGGAGGAGCTGCTGCACTACGTGGGCCAG GTGAGTGGAGCCTGGAGGAGCTGCTGCACTACGTGGGCCAG < 41bp 1 0.687121459801304 1 0.286632239818573 experiment 0.625757080397393 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RMND5B ENSG00000145916 CDS Human protein_coding chr5:177565214 chr5:177565199 nonsynonymous SNV 0.974 3 6 hm5C_associated_SNPs_21909 0 0 1 0 1 RMND5B chr5:177565259 5'GT 177565259 Upstream 61bp
chr11 8016899 8016899 1 + C G DLBC 8016893 + 8016873 8016913 41 GTTCCCGATGACTTTGAGACCATGCTCAACAGCAACATCAA GTTCCCGATGACTTTGAGACCATGCTGAACAGCAACATCAA < 41bp 1 0.211225570492905 1 0.153440296649933 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF3F ENSG00000175390 CDS Human protein_coding chr11:8016893 chr11:8016899 synonymous SNV . 0 27 hm5C_associated_SNPs_21913 0 0 1 0 2 EIF3F chr11:8016801 3'AG 8016801 Downstream 99bp
chr11 8016899 8016899 1 + C G DLBC 8016893 + 8016873 8016913 41 GTTCCCGATGACTTTGAGACCATGCTCAACAGCAACATCAA GTTCCCGATGACTTTGAGACCATGCTGAACAGCAACATCAA < 41bp 1 0.211225570492905 1 0.153440296649933 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF3F ENSG00000175390 CDS Human protein_coding chr11:8016893 chr11:8016899 synonymous SNV . 0 27 hm5C_associated_SNPs_21913 0 0 1 0 2 EIF3F chr11:8016914 5'GT 8016914 Upstream 16bp
chr19 39948337 39948337 1 + C T DLBC 39948343 + 39948323 39948363 41 GATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA GATGAGTATGAGGATGAGGACCAGTGGGAGGATGGAGCAGA < 41bp 1 0.256774489466289 1 0.108244180679321 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948343 chr19:39948337 synonymous SNV . 0 15 hm5C_associated_SNPs_21914 0 0 1 0 2 SUPT5H chr19:39948315 3'AG 39948315 Downstream 23bp
chr19 39948337 39948337 1 + C T DLBC 39948343 + 39948323 39948363 41 GATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA GATGAGTATGAGGATGAGGACCAGTGGGAGGATGGAGCAGA < 41bp 1 0.256774489466289 1 0.108244180679321 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948343 chr19:39948337 synonymous SNV . 0 15 hm5C_associated_SNPs_21914 0 0 1 0 2 SUPT5H chr19:39948380 5'GT 39948380 Upstream 44bp
chr19 39948337 39948337 1 + C T DLBC 39948344 + 39948324 39948364 41 ATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGAG ATGAGTATGAGGATGAGGACCAGTGGGAGGATGGAGCAGAG < 41bp 1 0.509985891527622 1 0.328000962734222 experiment 0.980028216944756 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948344 chr19:39948337 synonymous SNV . 0 14 hm5C_associated_SNPs_21915 0 0 1 0 2 SUPT5H chr19:39948315 3'AG 39948315 Downstream 23bp
chr19 39948337 39948337 1 + C T DLBC 39948344 + 39948324 39948364 41 ATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGAG ATGAGTATGAGGATGAGGACCAGTGGGAGGATGGAGCAGAG < 41bp 1 0.509985891527622 1 0.328000962734222 experiment 0.980028216944756 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948344 chr19:39948337 synonymous SNV . 0 14 hm5C_associated_SNPs_21915 0 0 1 0 2 SUPT5H chr19:39948380 5'GT 39948380 Upstream 44bp
chr1 248039254 248039254 1 + C T DLBC 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGAGTCTGCTCTTGACCGCTGACCTGCGCAGTGTGCA < 41bp 1 0.50063761700264 1 0.207221150398254 experiment 0.99872476599472 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039254 synonymous SNV . 0 24 hm5C_associated_SNPs_21916 0 0 0 0 2 TRIM58 chr1:248039202 3'AG 248039202 Downstream 53bp
chr1 248039254 248039254 1 + C T DLBC 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGAGTCTGCTCTTGACCGCTGACCTGCGCAGTGTGCA < 41bp 1 0.50063761700264 1 0.207221150398254 experiment 0.99872476599472 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039254 synonymous SNV . 0 24 hm5C_associated_SNPs_21916 0 0 0 0 2 TRIM58 chr1:248039339 5'GT 248039339 Upstream 86bp
chr15 45427482 45427482 1 + G A DLBC 45427487 + 45427467 45427507 41 GTCCCAGCAATCCCCGGGACCCGGTGAGGCGGGGAAGGCGG GTCCCAGCAATCCCCAGGACCCGGTGAGGCGGGGAAGGCGG < 41bp 1 0.442421700132191 1 0.500493764877319 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45427487 chr15:45427482 nonsynonymous SNV 0.989 4 16 hm5C_associated_SNPs_21927 0 0 0 0 1 DUOX1 chr15:45427489 5'GT 45427489 Upstream 8bp
chr1 63282305 63282305 1 + G A DLBC 63282293 + 63282273 63282313 41 CGGGATGTACAATAGAGGATCACGTAATTGCAGGAAATGTA CGGGATGTACAATAGAGGATCACGTAATTGCAAGAAATGTA < 41bp 1 0.439018581868937 1 0.164164960384369 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATG4C ENSG00000125703 CDS Human protein_coding chr1:63282293 chr1:63282305 nonsynonymous SNV 0.996 1 33 hm5C_associated_SNPs_21929 0 0 1 0 1 ATG4C chr1:63282246 3'AG 63282246 Downstream 60bp
chrX 41075218 41075218 1 + T G DLBC 41075229 + 41075209 41075249 41 CTAAAGCGATTTGACTATGACTGGGAAAGAGAATGTGCAAT CTAAAGCGAGTTGACTATGACTGGGAAAGAGAATGTGCAAT < 41bp 1 0.381763376502144 1 0.269764184951782 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41075229 chrX:41075218 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_21932 0 0 1 0 1 USP9X chrX:41075152 3'AG 41075152 Downstream 67bp
chr8 92090650 92090650 1 + A G ESCA 92090658 + 92090638 92090678 41 ATTGAAAACTTAACAGGAGCCAGACATATGGAAAGTGAGAA ATTGAAAACTTAGCAGGAGCCAGACATATGGAAAGTGAGAA < 41bp 1 0.546396978854764 1 0.616359889507294 experiment 0.907206042290472 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OTUD6B ENSG00000155100 CDS Human protein_coding chr8:92090658 chr8:92090650 nonsynonymous SNV 0.979 0 13 hm5C_associated_SNPs_21934 0 0 1 0 1 OTUD6B chr8:92090584 3'AG 92090584 Downstream 67bp
chr8 98837299 98837299 1 + G A ESCA 98837312 + 98837292 98837332 41 TTGATTAGCTGTGTTTGGAACTGCTACCGATACATCAATGG TTGATTAACTGTGTTTGGAACTGCTACCGATACATCAATGG < 41bp 1 0.21089162907845 1 0.0541039109230042 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAPTM4B ENSG00000104341 CDS Human protein_coding chr8:98837312 chr8:98837299 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_21935 0 0 1 0 1 LAPTM4B chr8:98837381 5'GT 98837381 Upstream 83bp
chr7 4824612 4824612 1 + G A ESCA 4824600 + 4824580 4824620 41 TCCGCCACCTCCTCTGCCGGCCGCCTGCTGCCGCCCCGGGA TCCGCCACCTCCTCTGCCGGCCGCCTGCTGCCACCCCGGGA < 41bp 1 0.12181379480591 1 0.201610207557678 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824600 chr7:4824612 synonymous SNV . 0 33 hm5C_associated_SNPs_21936 0 0 1 0 2 AP5Z1 chr7:4824539 3'AG 4824539 Downstream 74bp
chr7 4824612 4824612 1 + G A ESCA 4824600 + 4824580 4824620 41 TCCGCCACCTCCTCTGCCGGCCGCCTGCTGCCGCCCCGGGA TCCGCCACCTCCTCTGCCGGCCGCCTGCTGCCACCCCGGGA < 41bp 1 0.12181379480591 1 0.201610207557678 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824600 chr7:4824612 synonymous SNV . 0 33 hm5C_associated_SNPs_21936 0 0 1 0 2 AP5Z1 chr7:4824679 5'GT 4824679 Upstream 68bp
chr7 4824612 4824612 1 + G A ESCA 4824610 + 4824590 4824630 41 CCTCTGCCGGCCGCCTGCTGCCGCCCCGGGAGCGGCTTCGG CCTCTGCCGGCCGCCTGCTGCCACCCCGGGAGCGGCTTCGG < 41bp 1 0.0998877309591912 1 0.124804854393005 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824610 chr7:4824612 synonymous SNV . 0 23 hm5C_associated_SNPs_21937 0 0 1 0 2 AP5Z1 chr7:4824539 3'AG 4824539 Downstream 74bp
chr7 4824612 4824612 1 + G A ESCA 4824610 + 4824590 4824630 41 CCTCTGCCGGCCGCCTGCTGCCGCCCCGGGAGCGGCTTCGG CCTCTGCCGGCCGCCTGCTGCCACCCCGGGAGCGGCTTCGG < 41bp 1 0.0998877309591912 1 0.124804854393005 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824610 chr7:4824612 synonymous SNV . 0 23 hm5C_associated_SNPs_21937 0 0 1 0 2 AP5Z1 chr7:4824679 5'GT 4824679 Upstream 68bp
chr6 158492679 158492679 1 + G A ESCA 158492660 + 158492640 158492680 41 AGCCATCGACACAGTGAAGACGGGCATGGGGGGCAAGGCGG AGCCATCGACACAGTGAAGACGGGCATGGGGGGCAAGGCAG < 41bp 1 0.729116632992492 1 0.66722047328949 experiment 0.541766734015016 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158492660 chr6:158492679 synonymous SNV . 0 40 hm5C_associated_SNPs_21940 0 0 1 0 1 SYNJ2 chr6:158492634 3'AG 158492634 Downstream 46bp
chr3 148562324 148562324 1 + T G ESCA 148562304 + 148562284 148562324 41 GTGAGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTT GTGAGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTG < 41bp 1 0.109858657767263 1 0.0925153493881226 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562304 chr3:148562324 nonsynonymous SNV 0.991 4 41 hm5C_associated_SNPs_21941 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 60bp
chr3 148562324 148562324 1 + T G ESCA 148562304 + 148562284 148562324 41 GTGAGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTT GTGAGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTG < 41bp 1 0.109858657767263 1 0.0925153493881226 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562304 chr3:148562324 nonsynonymous SNV 0.991 4 41 hm5C_associated_SNPs_21941 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 52bp
chr3 148562324 148562324 1 + T G ESCA 148562307 + 148562287 148562327 41 AGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTAT AGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTGTAT < 41bp 1 0.672896465396387 1 0.751876413822174 experiment 0.654207069207226 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562307 chr3:148562324 nonsynonymous SNV 0.991 4 38 hm5C_associated_SNPs_21942 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 60bp
chr3 148562324 148562324 1 + T G ESCA 148562307 + 148562287 148562327 41 AGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTAT AGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTGTAT < 41bp 1 0.672896465396387 1 0.751876413822174 experiment 0.654207069207226 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562307 chr3:148562324 nonsynonymous SNV 0.991 4 38 hm5C_associated_SNPs_21942 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 52bp
chr3 148562324 148562324 1 + T G ESCA 148562309 + 148562289 148562329 41 ATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGT ATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTGTATGT < 41bp 1 0.777543992003608 1 0.542323052883148 experiment 0.444912015992784 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562309 chr3:148562324 nonsynonymous SNV 0.991 4 36 hm5C_associated_SNPs_21943 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 60bp
chr3 148562324 148562324 1 + T G ESCA 148562309 + 148562289 148562329 41 ATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGT ATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTGTATGT < 41bp 1 0.777543992003608 1 0.542323052883148 experiment 0.444912015992784 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562309 chr3:148562324 nonsynonymous SNV 0.991 4 36 hm5C_associated_SNPs_21943 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 52bp
chr3 148562324 148562324 1 + T G ESCA 148562312 + 148562292 148562332 41 CAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGTCCT CAAGTGACAGAGCTTCTCGACAAGTTAGACTTGTATGTCCT < 41bp 1 0.423878539874253 1 0.10693234205246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562312 chr3:148562324 nonsynonymous SNV 0.991 4 33 hm5C_associated_SNPs_21944 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 60bp
chr3 148562324 148562324 1 + T G ESCA 148562312 + 148562292 148562332 41 CAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGTCCT CAAGTGACAGAGCTTCTCGACAAGTTAGACTTGTATGTCCT < 41bp 1 0.423878539874253 1 0.10693234205246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562312 chr3:148562324 nonsynonymous SNV 0.991 4 33 hm5C_associated_SNPs_21944 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 52bp
chr3 148562324 148562324 1 + T G ESCA 148562321 + 148562301 148562341 41 GAGCTTCTCGACAAGTTAGACTTTTATGTCCTGCCTGTGCT GAGCTTCTCGACAAGTTAGACTTGTATGTCCTGCCTGTGCT < 41bp 1 0.352239524245264 1 0.0325766205787659 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562321 chr3:148562324 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_21945 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 60bp
chr3 148562324 148562324 1 + T G ESCA 148562321 + 148562301 148562341 41 GAGCTTCTCGACAAGTTAGACTTTTATGTCCTGCCTGTGCT GAGCTTCTCGACAAGTTAGACTTGTATGTCCTGCCTGTGCT < 41bp 1 0.352239524245264 1 0.0325766205787659 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562321 chr3:148562324 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_21945 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 52bp
chr3 148562324 148562324 1 + T G ESCA 148562330 + 148562310 148562350 41 GACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGA GACAAGTTAGACTTGTATGTCCTGCCTGTGCTCAATATTGA < 41bp 1 0.0861878051601267 1 0.0413023829460144 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562330 chr3:148562324 nonsynonymous SNV 0.991 4 15 hm5C_associated_SNPs_21946 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 60bp
chr3 148562324 148562324 1 + T G ESCA 148562330 + 148562310 148562350 41 GACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGA GACAAGTTAGACTTGTATGTCCTGCCTGTGCTCAATATTGA < 41bp 1 0.0861878051601267 1 0.0413023829460144 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562330 chr3:148562324 nonsynonymous SNV 0.991 4 15 hm5C_associated_SNPs_21946 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 52bp
chr3 148562324 148562324 1 + T G ESCA 148562331 + 148562311 148562351 41 ACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGAT ACAAGTTAGACTTGTATGTCCTGCCTGTGCTCAATATTGAT < 41bp 1 0.261172597326754 1 0.0919526219367981 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562331 chr3:148562324 nonsynonymous SNV 0.991 4 14 hm5C_associated_SNPs_21947 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 60bp
chr3 148562324 148562324 1 + T G ESCA 148562331 + 148562311 148562351 41 ACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGAT ACAAGTTAGACTTGTATGTCCTGCCTGTGCTCAATATTGAT < 41bp 1 0.261172597326754 1 0.0919526219367981 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562331 chr3:148562324 nonsynonymous SNV 0.991 4 14 hm5C_associated_SNPs_21947 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 52bp
chr3 148562324 148562324 1 + T G ESCA 148562334 + 148562314 148562354 41 AGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGC AGTTAGACTTGTATGTCCTGCCTGTGCTCAATATTGATGGC < 41bp 1 0.123823371350544 1 0.0687502026557922 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562334 chr3:148562324 nonsynonymous SNV 0.991 4 11 hm5C_associated_SNPs_21948 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 60bp
chr3 148562324 148562324 1 + T G ESCA 148562334 + 148562314 148562354 41 AGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGC AGTTAGACTTGTATGTCCTGCCTGTGCTCAATATTGATGGC < 41bp 1 0.123823371350544 1 0.0687502026557922 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562334 chr3:148562324 nonsynonymous SNV 0.991 4 11 hm5C_associated_SNPs_21948 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 52bp
chr3 148562324 148562324 1 + T G ESCA 148562335 + 148562315 148562355 41 GTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGCT GTTAGACTTGTATGTCCTGCCTGTGCTCAATATTGATGGCT < 41bp 1 0.40164731595463 1 0.314592659473419 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562335 chr3:148562324 nonsynonymous SNV 0.991 4 10 hm5C_associated_SNPs_21949 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 60bp
chr3 148562324 148562324 1 + T G ESCA 148562335 + 148562315 148562355 41 GTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGCT GTTAGACTTGTATGTCCTGCCTGTGCTCAATATTGATGGCT < 41bp 1 0.40164731595463 1 0.314592659473419 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562335 chr3:148562324 nonsynonymous SNV 0.991 4 10 hm5C_associated_SNPs_21949 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 52bp
chr3 148562324 148562324 1 + T G ESCA 148562342 + 148562322 148562362 41 TTTTATGTCCTGCCTGTGCTCAATATTGATGGCTACATCTA TTGTATGTCCTGCCTGTGCTCAATATTGATGGCTACATCTA < 41bp 1 0.627686278959274 1 0.200549989938736 experiment 0.744627442081453 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562342 chr3:148562324 nonsynonymous SNV 0.991 4 3 hm5C_associated_SNPs_21950 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 60bp
chr3 148562324 148562324 1 + T G ESCA 148562342 + 148562322 148562362 41 TTTTATGTCCTGCCTGTGCTCAATATTGATGGCTACATCTA TTGTATGTCCTGCCTGTGCTCAATATTGATGGCTACATCTA < 41bp 1 0.627686278959274 1 0.200549989938736 experiment 0.744627442081453 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562342 chr3:148562324 nonsynonymous SNV 0.991 4 3 hm5C_associated_SNPs_21950 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 52bp
chr17 4926854 4926854 1 + G A ESCA 4926871 + 4926851 4926891 41 ACCGCATGCCGTCAGCCCGGCCCCCCTCGCCACCACTGTCA ACCACATGCCGTCAGCCCGGCCCCCCTCGCCACCACTGTCA < 41bp 1 0.0710061756540799 1 0.0309507846832275 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926871 chr17:4926854 nonsynonymous SNV 0.006 0 4 hm5C_associated_SNPs_21951 0 0 1 0 1 KIF1C chr17:4926763 3'AG 4926763 Downstream 92bp
chr17 4926854 4926854 1 + G A ESCA 4926874 + 4926854 4926894 41 GCATGCCGTCAGCCCGGCCCCCCTCGCCACCACTGTCAAGC ACATGCCGTCAGCCCGGCCCCCCTCGCCACCACTGTCAAGC < 41bp 1 0.080146948365823 1 0.0328373312950134 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926874 chr17:4926854 nonsynonymous SNV 0.006 0 1 hm5C_associated_SNPs_21952 0 0 1 0 1 KIF1C chr17:4926763 3'AG 4926763 Downstream 92bp
chr14 52417395 52417395 1 + C T ESCA 52417401 + 52417381 52417421 41 TCTATCCAGCACTCCGATGGCCAGCAACAACACCGCCAGCA TCTATCCAGCACTCTGATGGCCAGCAACAACACCGCCAGCA < 41bp 1 0.324823504866521 1 0.335916757583618 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNG2 ENSG00000186469 CDS Human protein_coding chr14:52417401 chr14:52417395 nonsynonymous SNV 0.050 1 15 hm5C_associated_SNPs_21963 0 0 0 0 1 GNG2 chr14:52417483 5'GT 52417483 Upstream 89bp
chr12 57627884 57627884 1 + A G ESCA 57627865 + 57627845 57627885 41 TTTATAGATGAAGGGGTCAACATTGGCTTAGAGGTGAAGAG TTTATAGATGAAGGGGTCAACATTGGCTTAGAGGTGAAGGG < 41bp 1 0.244153287120526 1 0.180903285741806 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57627865 chr12:57627884 nonsynonymous SNV 0.731 0 40 hm5C_associated_SNPs_21964 0 0 1 0 2 SHMT2 chr12:57627786 3'AG 57627786 Downstream 99bp
chr12 57627884 57627884 1 + A G ESCA 57627865 + 57627845 57627885 41 TTTATAGATGAAGGGGTCAACATTGGCTTAGAGGTGAAGAG TTTATAGATGAAGGGGTCAACATTGGCTTAGAGGTGAAGGG < 41bp 1 0.244153287120526 1 0.180903285741806 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57627865 chr12:57627884 nonsynonymous SNV 0.731 0 40 hm5C_associated_SNPs_21964 0 0 1 0 2 SHMT2 chr12:57627893 5'GT 57627893 Upstream 10bp
chr20 3893116 3893116 1 + G A ESCA 3893135 + 3893115 3893155 41 GGAACTTTTTTTGGTCTCTGCTGTCTTCTTACTGGCTGTAC GAAACTTTTTTTGGTCTCTGCTGTCTTCTTACTGGCTGTAC < 41bp 1 0.118244791185157 1 0.127828240394592 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PANK2 ENSG00000125779 CDS Human protein_coding chr20:3893135 chr20:3893116 nonsynonymous SNV 1.000 5 2 hm5C_associated_SNPs_21965 0 0 1 0 1 PANK2 chr20:3893105 3'AG 3893105 Downstream 12bp
chrX 41198321 41198321 1 + C T ESCA 41198304 + 41198284 41198324 41 TTTAGAAGGGCGCTATATTCCTCCTCATTTAAGGAACCGAG TTTAGAAGGGCGCTATATTCCTCCTCATTTAAGGAACTGAG < 41bp 1 0.313706110648108 1 0.318354457616806 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41198304 chrX:41198321 stopgain 0.987 1 38 hm5C_associated_SNPs_21966 0 0 1 0 2 DDX3X chrX:41198289 3'AG 41198289 Downstream 33bp
chrX 41198321 41198321 1 + C T ESCA 41198304 + 41198284 41198324 41 TTTAGAAGGGCGCTATATTCCTCCTCATTTAAGGAACCGAG TTTAGAAGGGCGCTATATTCCTCCTCATTTAAGGAACTGAG < 41bp 1 0.313706110648108 1 0.318354457616806 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41198304 chrX:41198321 stopgain 0.987 1 38 hm5C_associated_SNPs_21966 0 0 1 0 2 DDX3X chrX:41198336 5'GT 41198336 Upstream 16bp
chr20 30526987 30526987 1 + G T ESCA 30526975 + 30526955 30526995 41 AGGGAGAAGCGAGTCGGGGGCTTTGACCTCATGTGGAATGA AGGGAGAAGCGAGTCGGGGGCTTTGACCTCATTTGGAATGA < 41bp 1 0.230777494826948 1 0.0621107816696167 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30526975 chr20:30526987 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_21967 0 0 0 0 1 TTLL9 chr20:30526945 3'AG 30526945 Downstream 43bp
chr11 107966314 107966314 1 + G A ESCA 107966308 + 107966288 107966328 41 ATTTGGAGGTAACCACGTTTCAGCTCGCTGTATTGTTTGCA ATTTGGAGGTAACCACGTTTCAGCTCACTGTATTGTTTGCA < 41bp 1 0.481793966105311 1 0.554778695106506 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL5 ENSG00000166266 CDS Human protein_coding chr11:107966308 chr11:107966314 nonsynonymous SNV 0.994 3 27 hm5C_associated_SNPs_21968 0 0 1 0 1 CUL5 chr11:107966257 3'AG 107966257 Downstream 58bp
chr14 105959065 105959065 1 + G T ESCA 105959051 + 105959031 105959071 41 TGGTGTCCAGTCAGCAGGAGCAGTGCGCCCTCCTGAGCAAG TGGTGTCCAGTCAGCAGGAGCAGTGCGCCCTCCTTAGCAAG < 41bp 1 0.320249277715721 1 0.26678329706192 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105959051 chr14:105959065 synonymous SNV . 0 35 hm5C_associated_SNPs_21972 0 0 0 0 1 C14orf80 chr14:105959071 5'GT 105959071 Upstream 7bp
chrX 21869646 21869646 1 + C T ESCA 21869650 + 21869630 21869670 41 CCTGGTATAAATTTACCCGTCAATCAACTGACCTATTTCTT CCTGGTATAAATTTACTCGTCAATCAACTGACCTATTTCTT < 41bp 1 0.100235592546525 1 0.0702112019062042 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MBTPS2 ENSG00000012174 CDS Human protein_coding chrX:21869650 chrX:21869646 nonsynonymous SNV 0.997 5 17 hm5C_associated_SNPs_21975 0 0 1 0 2 MBTPS2 chrX:21869627 3'AG 21869627 Downstream 20bp
chrX 21869646 21869646 1 + C T ESCA 21869650 + 21869630 21869670 41 CCTGGTATAAATTTACCCGTCAATCAACTGACCTATTTCTT CCTGGTATAAATTTACTCGTCAATCAACTGACCTATTTCTT < 41bp 1 0.100235592546525 1 0.0702112019062042 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MBTPS2 ENSG00000012174 CDS Human protein_coding chrX:21869650 chrX:21869646 nonsynonymous SNV 0.997 5 17 hm5C_associated_SNPs_21975 0 0 1 0 2 MBTPS2 chrX:21869730 5'GT 21869730 Upstream 85bp
chr7 142459717 142459717 1 + A G ESCA 142459703 + 142459683 142459723 41 TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGA TTCATCAATGCAGCCAAGATCATCCGCCACCCCCGATACGA < 41bp 1 0.332375890318514 1 0.104833275079727 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459703 chr7:142459717 nonsynonymous SNV 0.003 0 35 hm5C_associated_SNPs_21976 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 93bp
chr7 142459717 142459717 1 + A G ESCA 142459706 + 142459686 142459726 41 ATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAG ATCAATGCAGCCAAGATCATCCGCCACCCCCGATACGACAG < 41bp 1 0.312996281397155 1 0.464460045099258 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459706 chr7:142459717 nonsynonymous SNV 0.003 0 32 hm5C_associated_SNPs_21977 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 93bp
chr7 142459717 142459717 1 + A G ESCA 142459707 + 142459687 142459727 41 TCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGG TCAATGCAGCCAAGATCATCCGCCACCCCCGATACGACAGG < 41bp 1 0.749746027524382 1 0.539346516132355 experiment 0.500507944951237 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459707 chr7:142459717 nonsynonymous SNV 0.003 0 31 hm5C_associated_SNPs_21978 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 93bp
chr7 142459717 142459717 1 + A G ESCA 142459709 + 142459689 142459729 41 AATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA AATGCAGCCAAGATCATCCGCCACCCCCGATACGACAGGAA < 41bp 1 0.112446005434302 1 0.112465620040894 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459709 chr7:142459717 nonsynonymous SNV 0.003 0 29 hm5C_associated_SNPs_21979 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 93bp
chr7 142459717 142459717 1 + A G ESCA 142459710 + 142459690 142459730 41 ATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG ATGCAGCCAAGATCATCCGCCACCCCCGATACGACAGGAAG < 41bp 1 0.20149402711711 1 0.148545444011688 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459710 chr7:142459717 nonsynonymous SNV 0.003 0 28 hm5C_associated_SNPs_21980 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 93bp
chr7 142459717 142459717 1 + A G ESCA 142459712 + 142459692 142459732 41 GCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC GCAGCCAAGATCATCCGCCACCCCCGATACGACAGGAAGAC < 41bp 1 0.177175439566829 1 0.0658681988716125 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459712 chr7:142459717 nonsynonymous SNV 0.003 0 26 hm5C_associated_SNPs_21981 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 93bp
chr7 142459717 142459717 1 + A G ESCA 142459713 + 142459693 142459733 41 CAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT CAGCCAAGATCATCCGCCACCCCCGATACGACAGGAAGACT < 41bp 1 0.355340372024491 1 0.443891257047653 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459713 chr7:142459717 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_21982 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 93bp
chr7 142459717 142459717 1 + A G ESCA 142459714 + 142459694 142459734 41 AGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC AGCCAAGATCATCCGCCACCCCCGATACGACAGGAAGACTC < 41bp 1 0.693286221244037 1 0.293168604373932 experiment 0.613427557511926 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459714 chr7:142459717 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_21983 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 93bp
chr7 142459717 142459717 1 + A G ESCA 142459715 + 142459695 142459735 41 GCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCT GCCAAGATCATCCGCCACCCCCGATACGACAGGAAGACTCT < 41bp 1 0.332061800539703 1 0.19916620850563 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459715 chr7:142459717 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_21984 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 93bp
chr7 142459717 142459717 1 + A G ESCA 142459716 + 142459696 142459736 41 CCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCTG CCAAGATCATCCGCCACCCCCGATACGACAGGAAGACTCTG < 41bp 1 0.483948895420251 1 0.136003047227859 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459716 chr7:142459717 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_21985 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 93bp
chr7 142459717 142459717 1 + A G ESCA 142459732 + 142459712 142459752 41 CCCCCAATACGACAGGAAGACTCTGAACAATGACATCATGT CCCCCGATACGACAGGAAGACTCTGAACAATGACATCATGT < 41bp 1 0.51671172818764 1 0.204587042331696 experiment 0.96657654362472 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459732 chr7:142459717 nonsynonymous SNV 0.003 0 6 hm5C_associated_SNPs_21986 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 93bp
chr19 42814490 42814490 1 + A T ESCA 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCTGAGCA < 41bp 1 0.161348702947285 1 0.22471085190773 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814490 synonymous SNV . 0 36 hm5C_associated_SNPs_21987 0 0 0 4 1 PRR19 chr19:42814423 3'AG 42814423 Downstream 68bp
chr10 103919295 103919295 1 + G T ESCA 103919298 + 103919278 103919318 41 CCAGTGACGAGGAAGAGGAGCAAAAAAAACCCATGAAAAAT CCAGTGACGAGGAAGAGTAGCAAAAAAAACCCATGAAAAAT < 41bp 1 0.639619299988617 1 0.588473796844482 experiment 0.720761400022767 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919298 chr10:103919295 stopgain 0.597 0 18 hm5C_associated_SNPs_21988 0 0 1 0 1 NOLC1 chr10:103919325 5'GT 103919325 Upstream 31bp
chr11 64032910 64032910 1 + C T ESCA 64032900 + 64032880 64032920 41 CATCAGCGGAAGGCAGTCACCCTCACCCGCCGCCTGCTGGA CATCAGCGGAAGGCAGTCACCCTCACCCGCTGCCTGCTGGA < 41bp 1 0.178619291937204 1 0.0774054527282715 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64032900 chr11:64032910 nonsynonymous SNV 0.787 2 31 hm5C_associated_SNPs_21989 0 0 0 0 1 PLCB3 chr11:64032974 5'GT 64032974 Upstream 65bp
chr18 12725469 12725469 1 + G C ESCA 12725465 + 12725445 12725485 41 ACCCCACAGTATCTGCCTCACGGTGGAAAATACCAAGTTCT ACCCCACAGTATCTGCCTCACGGTCGAAAATACCAAGTTCT < 41bp 1 0.656699137030937 1 0.370460033416748 experiment 0.686601725938126 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMG2 ENSG00000128789 CDS Human protein_coding chr18:12725465 chr18:12725469 nonsynonymous SNV 0.822 4 25 hm5C_associated_SNPs_21990 0 0 1 0 1 PSMG2 chr18:12725438 3'AG 12725438 Downstream 32bp
chr19 5691620 5691620 1 + C G ESCA 5691613 + 5691593 5691633 41 ACTGGCCGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGAG ACTGGCCGCCATGAGGAAAGCTGCTGCGAAGAAAGACTGAG < 41bp 1 0.660826074425941 1 0.425768256187439 experiment 0.678347851148118 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RPL36 ENSG00000130255 CDS Human protein_coding chr19:5691613 chr19:5691620 synonymous SNV . 0 28 hm5C_associated_SNPs_21991 0 0 1 0 1 RPL36 chr19:5691543 3'AG 5691543 Downstream 78bp
chr19 5691620 5691620 1 + C G ESCA 5691640 + 5691620 5691660 41 CAAGAAAGACTGAGCCCCTCCCCTGCCCTCTCCCTGAAATA GAAGAAAGACTGAGCCCCTCCCCTGCCCTCTCCCTGAAATA < 41bp 1 0.135497028254983 1 0.0973810255527496 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL36 ENSG00000130255 CDS Human protein_coding chr19:5691640 chr19:5691620 synonymous SNV . 0 1 hm5C_associated_SNPs_21992 0 0 1 0 1 RPL36 chr19:5691543 3'AG 5691543 Downstream 78bp
chr19 54942076 54942076 1 + C T ESCA 54942079 + 54942059 54942099 41 TGTGCCTCAGTTCCCTTCAGCGCAGGTCGGTGGGTGGGCGC TGTGCCTCAGTTCCCTTTAGCGCAGGTCGGTGGGTGGGCGC < 41bp 1 0.783106403945291 1 0.561883985996246 experiment 0.433787192109419 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54942079 chr19:54942076 nonsynonymous SNV 0.495 1 18 hm5C_associated_SNPs_21994 0 0 0 0 2 TTYH1 chr19:54941991 3'AG 54941991 Downstream 86bp
chr19 54942076 54942076 1 + C T ESCA 54942079 + 54942059 54942099 41 TGTGCCTCAGTTCCCTTCAGCGCAGGTCGGTGGGTGGGCGC TGTGCCTCAGTTCCCTTTAGCGCAGGTCGGTGGGTGGGCGC < 41bp 1 0.783106403945291 1 0.561883985996246 experiment 0.433787192109419 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54942079 chr19:54942076 nonsynonymous SNV 0.495 1 18 hm5C_associated_SNPs_21994 0 0 0 0 2 TTYH1 chr19:54942083 5'GT 54942083 Upstream 8bp
chr11 68705794 68705794 1 + G A ESCA 68705792 + 68705772 68705812 41 TTCTGCCAGCTCTGCAGCCGCCGCTACTGCCTCAGCCACCA TTCTGCCAGCTCTGCAGCCGCCACTACTGCCTCAGCCACCA < 41bp 1 0.135227834021432 1 0.070393294095993 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68705792 chr11:68705794 nonsynonymous SNV 0.926 2 23 hm5C_associated_SNPs_21995 0 0 1 0 1 IGHMBP2 chr11:68705822 5'GT 68705822 Upstream 29bp
chr21 42629162 42629162 1 + G A ESCA 42629163 + 42629143 42629183 41 TTTCCCCATCCACAAATGCGCTGGTGATCGGTGCCACGGTG TTTCCCCATCCACAAATGCACTGGTGATCGGTGCCACGGTG < 41bp 1 0.578875983335514 1 0.130164921283722 experiment 0.842248033328972 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BACE2 ENSG00000182240 CDS Human protein_coding chr21:42629163 chr21:42629162 synonymous SNV . 0 20 hm5C_associated_SNPs_21996 0 0 1 0 2 BACE2 chr21:42629085 3'AG 42629085 Downstream 78bp
chr21 42629162 42629162 1 + G A ESCA 42629163 + 42629143 42629183 41 TTTCCCCATCCACAAATGCGCTGGTGATCGGTGCCACGGTG TTTCCCCATCCACAAATGCACTGGTGATCGGTGCCACGGTG < 41bp 1 0.578875983335514 1 0.130164921283722 experiment 0.842248033328972 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BACE2 ENSG00000182240 CDS Human protein_coding chr21:42629163 chr21:42629162 synonymous SNV . 0 20 hm5C_associated_SNPs_21996 0 0 1 0 2 BACE2 chr21:42629253 5'GT 42629253 Upstream 92bp
chr2 101598834 101598834 1 + G A ESCA 101598827 + 101598807 101598847 41 CAGCTCTGCCTGGTCCAGGACTCCAACGTCCAGGTGATCCC CAGCTCTGCCTGGTCCAGGACTCCAACATCCAGGTGATCCC < 41bp 1 0.672141268807088 1 0.977090954780579 experiment 0.655717462385824 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101598827 chr2:101598834 nonsynonymous SNV 0.875 0 28 hm5C_associated_SNPs_21997 0 0 1 0 1 NPAS2 chr2:101598839 5'GT 101598839 Upstream 6bp
chr15 74335396 74335396 1 + C A ESCA 74335388 + 74335368 74335408 41 TGACCTCCAGCTGGAAGGCCCCAGCACCCTCAGGGTCCTGG TGACCTCCAGCTGGAAGGCCCCAGCACCATCAGGGTCCTGG < 41bp 1 0.159990368775343 1 0.185105681419373 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74335388 chr15:74335396 nonsynonymous SNV 0.129 2 29 hm5C_associated_SNPs_21998 0 0 0 1 2 PML chr15:74335330 3'AG 74335330 Downstream 67bp
chr15 74335396 74335396 1 + C A ESCA 74335388 + 74335368 74335408 41 TGACCTCCAGCTGGAAGGCCCCAGCACCCTCAGGGTCCTGG TGACCTCCAGCTGGAAGGCCCCAGCACCATCAGGGTCCTGG < 41bp 1 0.159990368775343 1 0.185105681419373 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74335388 chr15:74335396 nonsynonymous SNV 0.129 2 29 hm5C_associated_SNPs_21998 0 0 0 1 2 PML chr15:74335480 5'GT 74335480 Upstream 85bp
chr16 1550422 1550422 1 + C T ESCA 1550440 + 1550420 1550460 41 CACGTCAGCAAGGCTGTCCTCATCTGCCTGGCGCAACTCGG CATGTCAGCAAGGCTGTCCTCATCTGCCTGGCGCAACTCGG < 41bp 1 0.355498623248697 1 0.127169132232666 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1550440 chr16:1550422 synonymous SNV . 0 3 hm5C_associated_SNPs_21999 0 0 1 0 2 TELO2 chr16:1550348 3'AG 1550348 Downstream 75bp
chr16 1550422 1550422 1 + C T ESCA 1550440 + 1550420 1550460 41 CACGTCAGCAAGGCTGTCCTCATCTGCCTGGCGCAACTCGG CATGTCAGCAAGGCTGTCCTCATCTGCCTGGCGCAACTCGG < 41bp 1 0.355498623248697 1 0.127169132232666 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1550440 chr16:1550422 synonymous SNV . 0 3 hm5C_associated_SNPs_21999 0 0 1 0 2 TELO2 chr16:1550489 5'GT 1550489 Upstream 68bp
chr19 6151730 6151730 1 + C T ESCA 6151718 + 6151698 6151738 41 GTTTGCTTTTTCCTTCCCAGCTGGGTTTGGAGCGTTTCCAC GTTTGCTTTTTCCTTCCCAGCTGGGTTTGGAGTGTTTCCAC < 41bp 1 0.767873601340671 1 0.556576192378998 experiment 0.464252797318659 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ACSBG2 ENSG00000130377 CDS Human protein_coding chr19:6151718 chr19:6151730 nonsynonymous SNV 0.996 2 33 hm5C_associated_SNPs_22001 0 0 0 0 2 ACSBG2 chr19:6151718 3'AG 6151718 Downstream 13bp
chr19 6151730 6151730 1 + C T ESCA 6151718 + 6151698 6151738 41 GTTTGCTTTTTCCTTCCCAGCTGGGTTTGGAGCGTTTCCAC GTTTGCTTTTTCCTTCCCAGCTGGGTTTGGAGTGTTTCCAC < 41bp 1 0.767873601340671 1 0.556576192378998 experiment 0.464252797318659 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ACSBG2 ENSG00000130377 CDS Human protein_coding chr19:6151718 chr19:6151730 nonsynonymous SNV 0.996 2 33 hm5C_associated_SNPs_22001 0 0 0 0 2 ACSBG2 chr19:6151806 5'GT 6151806 Upstream 77bp
chr2 231931656 231931656 1 + A G ESCA 231931662 + 231931642 231931682 41 CAAACAATGTGTGGAAAATGCAGATTTGCCTGAAGGAGAAA CAAACAATGTGTGGGAAATGCAGATTTGCCTGAAGGAGAAA < 41bp 1 0.356877105887351 1 0.439303815364838 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231931662 chr2:231931656 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_22003 0 0 1 0 1 PSMD1 chr2:231931620 3'AG 231931620 Downstream 37bp
chr20 23350283 23350283 1 + C T ESCA 23350279 + 23350259 23350299 41 TTCACCCAGCTCAACGCCCTCCAGCGCCACCGCCGCATCCA TTCACCCAGCTCAACGCCCTCCAGTGCCACCGCCGCATCCA < 41bp 1 0.559356495560574 1 0.593837082386017 experiment 0.881287008878852 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350279 chr20:23350283 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_22006 0 0 0 0 2 GZF1 chr20:23350221 3'AG 23350221 Downstream 63bp
chr20 23350283 23350283 1 + C T ESCA 23350279 + 23350259 23350299 41 TTCACCCAGCTCAACGCCCTCCAGCGCCACCGCCGCATCCA TTCACCCAGCTCAACGCCCTCCAGTGCCACCGCCGCATCCA < 41bp 1 0.559356495560574 1 0.593837082386017 experiment 0.881287008878852 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350279 chr20:23350283 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_22006 0 0 0 0 2 GZF1 chr20:23350378 5'GT 23350378 Upstream 96bp
chr16 727386 727386 1 + C T ESCA 727382 + 727362 727402 41 TGCTCTACCTGGCAGGCGTGCTGGCAGGTGAGGCAGGCGCG TGCTCTACCTGGCAGGCGTGCTGGTAGGTGAGGCAGGCGCG < 41bp 1 0.581797129393673 1 0.421425551176071 experiment 0.836405741212655 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RHBDL1 ENSG00000103269 CDS Human protein_coding chr16:727382 chr16:727386 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_22007 0 0 1 0 1 RHBDL1 chr16:727388 5'GT 727388 Upstream 3bp
chr9 35733097 35733097 1 + C T ESCA 35733112 + 35733092 35733132 41 CATGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTAT CATGATCACACCTACTCCCTCCCACGGGAAACTGTCTCTAT < 41bp 1 0.133004221679311 1 0.0683805346488953 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733112 chr9:35733097 synonymous SNV . 0 6 hm5C_associated_SNPs_22008 0 0 1 0 1 CREB3 chr9:35733140 5'GT 35733140 Upstream 44bp
chr9 35733097 35733097 1 + C T ESCA 35733113 + 35733093 35733133 41 ATGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTATG ATGATCACACCTACTCCCTCCCACGGGAAACTGTCTCTATG < 41bp 1 0.145008372190736 1 0.154749184846878 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733113 chr9:35733097 synonymous SNV . 0 5 hm5C_associated_SNPs_22009 0 0 1 0 1 CREB3 chr9:35733140 5'GT 35733140 Upstream 44bp
chr11 13399889 13399889 1 + C A ESCA 13399900 + 13399880 13399920 41 GTAGGTGGCCCAAAGAGGACCCACCCCACTGTTCCAGGGAT GTAGGTGGCACAAAGAGGACCCACCCCACTGTTCCAGGGAT < 41bp 1 0.0762565856792682 1 0.139331221580505 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARNTL ENSG00000133794 CDS Human protein_coding chr11:13399900 chr11:13399889 nonsynonymous SNV 1.000 0 10 hm5C_associated_SNPs_22010 0 0 0 0 1 ARNTL chr11:13399884 3'AG 13399884 Downstream 6bp
chr8 104343649 104343649 1 + G A ESCA 104343630 + 104343610 104343650 41 AGAGCAACAATTTGCAGGTCCCCAGTTCTTCAGAACCAAGC AGAGCAACAATTTGCAGGTCCCCAGTTCTTCAGAACCAAAC < 41bp 1 0.244817478905627 1 0.0546992421150208 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FZD6 ENSG00000164930 CDS Human protein_coding chr8:104343630 chr8:104343649 nonsynonymous SNV 0.972 0 40 hm5C_associated_SNPs_22012 0 0 1 0 1 FZD6 chr8:104343569 3'AG 104343569 Downstream 81bp
chr8 104343649 104343649 1 + G A ESCA 104343665 + 104343645 104343685 41 CCAAGCAGCCTCAAAGGTTCCACATCTCTGCTTGTTCACCC CCAAACAGCCTCAAAGGTTCCACATCTCTGCTTGTTCACCC < 41bp 1 0.496916820177834 1 0.0559030175209045 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FZD6 ENSG00000164930 CDS Human protein_coding chr8:104343665 chr8:104343649 nonsynonymous SNV 0.972 0 5 hm5C_associated_SNPs_22013 0 0 1 0 1 FZD6 chr8:104343569 3'AG 104343569 Downstream 81bp
chr1 26772909 26772909 1 + G A ESCA 26772901 + 26772881 26772921 41 AGCTGATTGCACAAGCTGTACAGGCCACGAAGAACTACAAC AGCTGATTGCACAAGCTGTACAGGCCACAAAGAACTACAAC < 41bp 1 0.392862091305955 1 0.635603308677673 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26772901 chr1:26772909 synonymous SNV . 0 29 hm5C_associated_SNPs_22014 0 0 0 0 1 DHDDS chr1:26772923 5'GT 26772923 Upstream 15bp
chr1 26772909 26772909 1 + G A ESCA 26772908 + 26772888 26772928 41 TGCACAAGCTGTACAGGCCACGAAGAACTACAACAAGTAAG TGCACAAGCTGTACAGGCCACAAAGAACTACAACAAGTAAG < 41bp 1 0.249951812091052 1 0.444805800914764 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26772908 chr1:26772909 synonymous SNV . 0 22 hm5C_associated_SNPs_22015 0 0 0 0 1 DHDDS chr1:26772923 5'GT 26772923 Upstream 15bp
chr10 112657823 112657823 1 + C T ESCA 112657840 + 112657820 112657860 41 GGTCGTCTTAAACCAGAGAGCTACTGAATATAAGAACTCTT GGTTGTCTTAAACCAGAGAGCTACTGAATATAAGAACTCTT < 41bp 1 0.219552793716729 1 0.150420188903809 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDCD4 ENSG00000150593 CDS Human protein_coding chr10:112657840 chr10:112657823 nonsynonymous SNV 0.998 2 4 hm5C_associated_SNPs_22016 0 0 1 0 1 PDCD4 chr10:112657786 3'AG 112657786 Downstream 38bp
chr3 130672710 130672710 1 + A C ESCA 130672711 + 130672691 130672731 41 CAGCTTGACAGGTGAGACAACGCCTTGTTCTAAGGTGACAG CAGCTTGACAGGTGAGACACCGCCTTGTTCTAAGGTGACAG < 41bp 1 0.653986067054109 1 0.0651845633983612 experiment 0.692027865891781 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130672711 chr3:130672710 nonsynonymous SNV 0.997 3 20 hm5C_associated_SNPs_22017 0 0 1 0 1 ATP2C1 chr3:130672665 3'AG 130672665 Downstream 46bp
chr12 2783715 2783715 1 + G C ESCA 2783718 + 2783698 2783738 41 GCCCTGCAGGGAACCTAGAACAAGCCAATGAGGAGCTGCGG GCCCTGCAGGGAACCTACAACAAGCCAATGAGGAGCTGCGG < 41bp 1 0.291436807630924 1 0.776152729988098 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CACNA1C ENSG00000151067 CDS Human protein_coding chr12:2783718 chr12:2783715 nonsynonymous SNV 0.978 5 18 hm5C_associated_SNPs_22019 0 0 0 0 3 CACNA1C chr12:2783650 3'AG 2783650 Downstream 66bp
chr12 2783715 2783715 1 + G C ESCA 2783718 + 2783698 2783738 41 GCCCTGCAGGGAACCTAGAACAAGCCAATGAGGAGCTGCGG GCCCTGCAGGGAACCTACAACAAGCCAATGAGGAGCTGCGG < 41bp 1 0.291436807630924 1 0.776152729988098 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CACNA1C ENSG00000151067 CDS Human protein_coding chr12:2783718 chr12:2783715 nonsynonymous SNV 0.978 5 18 hm5C_associated_SNPs_22019 0 0 0 0 3 CACNA1C chr12:2783707 3'AG 2783707 Downstream 9bp
chr12 2783715 2783715 1 + G C ESCA 2783718 + 2783698 2783738 41 GCCCTGCAGGGAACCTAGAACAAGCCAATGAGGAGCTGCGG GCCCTGCAGGGAACCTACAACAAGCCAATGAGGAGCTGCGG < 41bp 1 0.291436807630924 1 0.776152729988098 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CACNA1C ENSG00000151067 CDS Human protein_coding chr12:2783718 chr12:2783715 nonsynonymous SNV 0.978 5 18 hm5C_associated_SNPs_22019 0 0 0 0 3 CACNA1C chr12:2783808 5'GT 2783808 Upstream 94bp
chr20 30358170 30358170 1 + G A ESCA 30358151 + 30358131 30358171 41 ATTTCTCTACCATAGAAGATCTCTTAGGCTTTCTGCTCAGA ATTTCTCTACCATAGAAGATCTCTTAGGCTTTCTGCTCAAA < 41bp 1 0.0800953285753323 1 0.0586842000484467 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30358151 chr20:30358170 synonymous SNV . 0 40 hm5C_associated_SNPs_22020 0 0 1 0 1 TPX2 chr20:30358146 3'AG 30358146 Downstream 25bp
chr17 18137986 18137986 1 + A G ESCA 18138006 + 18137986 18138026 41 AACAAGATTCTGTGGCGGAACTGTGAATCTGGGTAGGTCGA GACAAGATTCTGTGGCGGAACTGTGAATCTGGGTAGGTCGA < 41bp 1 0.269430322510856 1 0.497923403978348 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18138006 chr17:18137986 nonsynonymous SNV 0.998 1 1 hm5C_associated_SNPs_22022 0 0 1 0 2 LLGL1 chr17:18137963 3'AG 18137963 Downstream 24bp
chr17 18137986 18137986 1 + A G ESCA 18138006 + 18137986 18138026 41 AACAAGATTCTGTGGCGGAACTGTGAATCTGGGTAGGTCGA GACAAGATTCTGTGGCGGAACTGTGAATCTGGGTAGGTCGA < 41bp 1 0.269430322510856 1 0.497923403978348 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18138006 chr17:18137986 nonsynonymous SNV 0.998 1 1 hm5C_associated_SNPs_22022 0 0 1 0 2 LLGL1 chr17:18138017 5'GT 18138017 Upstream 32bp
chr19 11152145 11152145 1 + C T ESCA 11152165 + 11152145 11152185 41 CGGCCGCCTGCCGAGAAACTCTCCCCTAACCCACCCAACCT TGGCCGCCTGCCGAGAAACTCTCCCCTAACCCACCCAACCT < 41bp 1 0.374143506947602 1 0.372045189142227 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11152165 chr19:11152145 nonsynonymous SNV 0.996 4 1 hm5C_associated_SNPs_22023 0 0 1 0 1 SMARCA4 chr19:11152236 5'GT 11152236 Upstream 92bp
chr22 24204366 24204366 1 + T C ESCA 24204381 + 24204361 24204401 41 ACCTCTCTATCATCAATGCCCCGACCTTGGTATGTATCCTC ACCTCCCTATCATCAATGCCCCGACCTTGGTATGTATCCTC < 41bp 1 0.0750087493235044 1 0.0487202107906342 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24204381 chr22:24204366 nonsynonymous SNV 0.995 3 6 hm5C_associated_SNPs_22029 0 0 1 0 2 SLC2A11 chr22:24204291 3'AG 24204291 Downstream 76bp
chr22 24204366 24204366 1 + T C ESCA 24204381 + 24204361 24204401 41 ACCTCTCTATCATCAATGCCCCGACCTTGGTATGTATCCTC ACCTCCCTATCATCAATGCCCCGACCTTGGTATGTATCCTC < 41bp 1 0.0750087493235044 1 0.0487202107906342 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460 CDS Human other chr22:24204381 chr22:24204366 nonsynonymous SNV 0.995 3 6 hm5C_associated_SNPs_22029 0 0 1 0 2 SLC2A11 chr22:24204389 5'GT 24204389 Upstream 24bp
chr22 24204366 24204366 1 + T C ESCA 24204382 + 24204362 24204402 41 CCTCTCTATCATCAATGCCCCGACCTTGGTATGTATCCTCT CCTCCCTATCATCAATGCCCCGACCTTGGTATGTATCCTCT < 41bp 1 0.147442771794508 1 0.168306708335876 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24204382 chr22:24204366 nonsynonymous SNV 0.995 3 5 hm5C_associated_SNPs_22030 0 0 1 0 2 SLC2A11 chr22:24204291 3'AG 24204291 Downstream 76bp
chr22 24204366 24204366 1 + T C ESCA 24204382 + 24204362 24204402 41 CCTCTCTATCATCAATGCCCCGACCTTGGTATGTATCCTCT CCTCCCTATCATCAATGCCCCGACCTTGGTATGTATCCTCT < 41bp 1 0.147442771794508 1 0.168306708335876 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460 CDS Human other chr22:24204382 chr22:24204366 nonsynonymous SNV 0.995 3 5 hm5C_associated_SNPs_22030 0 0 1 0 2 SLC2A11 chr22:24204389 5'GT 24204389 Upstream 24bp
chr22 24204366 24204366 1 + T C ESCA 24204386 + 24204366 24204406 41 TCTATCATCAATGCCCCGACCTTGGTATGTATCCTCTCTGG CCTATCATCAATGCCCCGACCTTGGTATGTATCCTCTCTGG < 41bp 1 0.501192800959586 1 0.0429338812828064 experiment 0.997614398080827 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24204386 chr22:24204366 nonsynonymous SNV 0.995 3 1 hm5C_associated_SNPs_22031 0 0 1 0 2 SLC2A11 chr22:24204291 3'AG 24204291 Downstream 76bp
chr22 24204366 24204366 1 + T C ESCA 24204386 + 24204366 24204406 41 TCTATCATCAATGCCCCGACCTTGGTATGTATCCTCTCTGG CCTATCATCAATGCCCCGACCTTGGTATGTATCCTCTCTGG < 41bp 1 0.501192800959586 1 0.0429338812828064 experiment 0.997614398080827 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460 CDS Human other chr22:24204386 chr22:24204366 nonsynonymous SNV 0.995 3 1 hm5C_associated_SNPs_22031 0 0 1 0 2 SLC2A11 chr22:24204389 5'GT 24204389 Upstream 24bp
chr15 76630258 76630258 1 + C T ESCA 76630260 + 76630240 76630280 41 GTACCTGGACGAGACGTGCACGTGCTTCGTGAGAGACGGGA GTACCTGGACGAGACGTGTACGTGCTTCGTGAGAGACGGGA < 41bp 1 0.308327253449199 1 0.206024438142776 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ISL2 ENSG00000159556 CDS Human protein_coding chr15:76630260 chr15:76630258 synonymous SNV . 0 19 hm5C_associated_SNPs_22034 0 0 1 0 1 ISL2 chr15:76630308 5'GT 76630308 Upstream 51bp
chr7 99780445 99780445 1 + G A ESCA 99780447 + 99780427 99780467 41 TTCAATGCTGTGAAAGCCGCCAAAAGTGACATGCAGGTAAA TTCAATGCTGTGAAAGCCACCAAAAGTGACATGCAGGTAAA < 41bp 1 0.549162178696132 1 0.516759157180786 experiment 0.901675642607736 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG3 ENSG00000066923 CDS Human protein_coding chr7:99780447 chr7:99780445 nonsynonymous SNV 0.993 3 19 hm5C_associated_SNPs_22035 0 0 0 0 2 STAG3 chr7:99780346 3'AG 99780346 Downstream 100bp
chr7 99780445 99780445 1 + G A ESCA 99780447 + 99780427 99780467 41 TTCAATGCTGTGAAAGCCGCCAAAAGTGACATGCAGGTAAA TTCAATGCTGTGAAAGCCACCAAAAGTGACATGCAGGTAAA < 41bp 1 0.549162178696132 1 0.516759157180786 experiment 0.901675642607736 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG3 ENSG00000066923 CDS Human protein_coding chr7:99780447 chr7:99780445 nonsynonymous SNV 0.993 3 19 hm5C_associated_SNPs_22035 0 0 0 0 2 STAG3 chr7:99780462 5'GT 99780462 Upstream 18bp
chr12 8196342 8196342 1 + A G ESCA 8196351 + 8196331 8196371 41 TTTCCCGAAAGAGAAGACACCCTCCAGATGATGATGTAAGT TTTCCCGAAAGGGAAGACACCCTCCAGATGATGATGTAAGT < 41bp 1 0.0249142685225737 1 0.0906901359558105 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXJ2 ENSG00000065970 CDS Human protein_coding chr12:8196351 chr12:8196342 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_22037 0 0 1 0 1 FOXJ2 chr12:8196365 5'GT 8196365 Upstream 24bp
chr12 104492126 104492126 1 + G T ESCA 104492140 + 104492120 104492160 41 GAAAGAGACTCCTTCAAATCCAGTGGCCACAGTGAAAGCGG GAAAGATACTCCTTCAAATCCAGTGGCCACAGTGAAAGCGG < 41bp 1 0.458264270621265 1 0.463323950767517 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104492140 chr12:104492126 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_22038 0 0 1 0 1 HCFC2 chr12:104492121 3'AG 104492121 Downstream 6bp
chr9 80858446 80858446 1 + C T ESCA 80858436 + 80858416 80858456 41 GAGTCTTCGCTATAGGAGACCTGATCTTGACTGTATGGCTG GAGTCTTCGCTATAGGAGACCTGATCTTGATTGTATGGCTG < 41bp 1 0.309104129251962 1 0.0736338496208191 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP78 ENSG00000148019 CDS Human protein_coding chr9:80858436 chr9:80858446 synonymous SNV . 0 31 hm5C_associated_SNPs_22039 0 0 1 0 1 CEP78 chr9:80858378 3'AG 80858378 Downstream 69bp
chr19 18053577 18053577 1 + C T ESCA 18053574 + 18053554 18053594 41 CGGCAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCC CGGCAAGGCGCCGCGGGTGGCCATGTCCAGCAAGGTCACCC < 41bp 1 0.211061045402692 1 0.0779160559177399 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18053574 chr19:18053577 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_22041 0 0 1 0 1 CCDC124 chr19:18053654 5'GT 18053654 Upstream 78bp
chr19 18053577 18053577 1 + C T ESCA 18053575 + 18053555 18053595 41 GGCAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCCG GGCAAGGCGCCGCGGGTGGCCATGTCCAGCAAGGTCACCCG < 41bp 1 0.497464363322472 1 0.442425042390823 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18053575 chr19:18053577 nonsynonymous SNV 0.007 0 23 hm5C_associated_SNPs_22042 0 0 1 0 1 CCDC124 chr19:18053654 5'GT 18053654 Upstream 78bp
chr1 109773544 109773544 1 + C T ESCA 109773540 + 109773520 109773560 41 GAGGATTTGGGGTGATTGTACAGTCAGGAAGAAGTACTCTC GAGGATTTGGGGTGATTGTACAGTTAGGAAGAAGTACTCTC < 41bp 1 0.379372145448737 1 0.158663004636765 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SARS ENSG00000031698 CDS Human protein_coding chr1:109773540 chr1:109773544 synonymous SNV . 0 25 hm5C_associated_SNPs_22043 0 0 1 0 2 SARS chr1:109773500 3'AG 109773500 Downstream 45bp
chr1 109773544 109773544 1 + C T ESCA 109773540 + 109773520 109773560 41 GAGGATTTGGGGTGATTGTACAGTCAGGAAGAAGTACTCTC GAGGATTTGGGGTGATTGTACAGTTAGGAAGAAGTACTCTC < 41bp 1 0.379372145448737 1 0.158663004636765 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SARS ENSG00000031698 CDS Human protein_coding chr1:109773540 chr1:109773544 synonymous SNV . 0 25 hm5C_associated_SNPs_22043 0 0 1 0 2 SARS chr1:109773643 5'GT 109773643 Upstream 100bp
chr16 14972668 14972668 1 + G A ESCA 14972674 + 14972654 14972694 41 TGACCCAGGACAACGGCATTCTGACATTCTCAAACCTGGTA TGACCCAGGACAACAGCATTCTGACATTCTCAAACCTGGTA < 41bp 1 0.288262107170391 1 0.0720533728599548 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972674 chr16:14972668 nonsynonymous SNV 0.988 4 15 hm5C_associated_SNPs_22044 0 0 0 0 2 NOMO1 chr16:14972578 3'AG 14972578 Downstream 91bp
chr16 14972668 14972668 1 + G A ESCA 14972674 + 14972654 14972694 41 TGACCCAGGACAACGGCATTCTGACATTCTCAAACCTGGTA TGACCCAGGACAACAGCATTCTGACATTCTCAAACCTGGTA < 41bp 1 0.288262107170391 1 0.0720533728599548 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972674 chr16:14972668 nonsynonymous SNV 0.988 4 15 hm5C_associated_SNPs_22044 0 0 0 0 2 NOMO1 chr16:14972691 5'GT 14972691 Upstream 24bp
chr16 14972668 14972668 1 + G A ESCA 14972678 + 14972658 14972698 41 CCAGGACAACGGCATTCTGACATTCTCAAACCTGGTAACGT CCAGGACAACAGCATTCTGACATTCTCAAACCTGGTAACGT < 41bp 1 0.0456569979177707 1 0.0114022195339203 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972678 chr16:14972668 nonsynonymous SNV 0.988 4 11 hm5C_associated_SNPs_22045 0 0 0 0 2 NOMO1 chr16:14972578 3'AG 14972578 Downstream 91bp
chr16 14972668 14972668 1 + G A ESCA 14972678 + 14972658 14972698 41 CCAGGACAACGGCATTCTGACATTCTCAAACCTGGTAACGT CCAGGACAACAGCATTCTGACATTCTCAAACCTGGTAACGT < 41bp 1 0.0456569979177707 1 0.0114022195339203 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972678 chr16:14972668 nonsynonymous SNV 0.988 4 11 hm5C_associated_SNPs_22045 0 0 0 0 2 NOMO1 chr16:14972691 5'GT 14972691 Upstream 24bp
chr16 14972668 14972668 1 + G A ESCA 14972682 + 14972662 14972702 41 GACAACGGCATTCTGACATTCTCAAACCTGGTAACGTGTTC GACAACAGCATTCTGACATTCTCAAACCTGGTAACGTGTTC < 41bp 1 0.593835270233515 1 0.881101250648499 experiment 0.812329459532971 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972682 chr16:14972668 nonsynonymous SNV 0.988 4 7 hm5C_associated_SNPs_22046 0 0 0 0 2 NOMO1 chr16:14972578 3'AG 14972578 Downstream 91bp
chr16 14972668 14972668 1 + G A ESCA 14972682 + 14972662 14972702 41 GACAACGGCATTCTGACATTCTCAAACCTGGTAACGTGTTC GACAACAGCATTCTGACATTCTCAAACCTGGTAACGTGTTC < 41bp 1 0.593835270233515 1 0.881101250648499 experiment 0.812329459532971 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972682 chr16:14972668 nonsynonymous SNV 0.988 4 7 hm5C_associated_SNPs_22046 0 0 0 0 2 NOMO1 chr16:14972691 5'GT 14972691 Upstream 24bp
chr19 10823277 10823277 1 + C T ESCA 10823292 + 10823272 10823312 41 ATGTTCGACTGCGTCTTCCCCACACGGACAGCGGTGAGGCT ATGTTTGACTGCGTCTTCCCCACACGGACAGCGGTGAGGCT < 41bp 1 0.263341622121219 1 0.0679230988025665 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10823292 chr19:10823277 synonymous SNV . 0 6 hm5C_associated_SNPs_22047 0 0 1 0 2 QTRT1 chr19:10823229 3'AG 10823229 Downstream 49bp
chr19 10823277 10823277 1 + C T ESCA 10823292 + 10823272 10823312 41 ATGTTCGACTGCGTCTTCCCCACACGGACAGCGGTGAGGCT ATGTTTGACTGCGTCTTCCCCACACGGACAGCGGTGAGGCT < 41bp 1 0.263341622121219 1 0.0679230988025665 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10823292 chr19:10823277 synonymous SNV . 0 6 hm5C_associated_SNPs_22047 0 0 1 0 2 QTRT1 chr19:10823304 5'GT 10823304 Upstream 28bp
chr15 91456129 91456129 1 + C T ESCA 91456118 + 91456098 91456138 41 TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCCCGTGCTGCG TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCTCGTGCTGCG < 41bp 1 0.682958074577971 1 0.852319836616516 experiment 0.634083850844058 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91456118 chr15:91456129 nonsynonymous SNV 0.833 4 32 hm5C_associated_SNPs_22048 0 0 1 1 2 MAN2A2 chr15:91456107 3'AG 91456107 Downstream 23bp
chr15 91456129 91456129 1 + C T ESCA 91456118 + 91456098 91456138 41 TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCCCGTGCTGCG TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCTCGTGCTGCG < 41bp 1 0.682958074577971 1 0.852319836616516 experiment 0.634083850844058 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91456118 chr15:91456129 nonsynonymous SNV 0.833 4 32 hm5C_associated_SNPs_22048 0 0 1 1 2 MAN2A2 chr15:91456221 5'GT 91456221 Upstream 93bp
chr8 145692681 145692681 1 + G T ESCA 145692679 + 145692659 145692699 41 GGGGGAGGCAGGCCCTGCTCCAGGGGACTCAGCCAGCCCCT GGGGGAGGCAGGCCCTGCTCCATGGGACTCAGCCAGCCCCT < 41bp 1 0.680392004305086 1 0.735656261444092 experiment 0.639215991389828 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145692679 chr8:145692681 nonsynonymous SNV 0.987 3 23 hm5C_associated_SNPs_22050 0 0 0 0 2 KIFC2 chr8:145692586 3'AG 145692586 Downstream 96bp
chr8 145692681 145692681 1 + G T ESCA 145692679 + 145692659 145692699 41 GGGGGAGGCAGGCCCTGCTCCAGGGGACTCAGCCAGCCCCT GGGGGAGGCAGGCCCTGCTCCATGGGACTCAGCCAGCCCCT < 41bp 1 0.680392004305086 1 0.735656261444092 experiment 0.639215991389828 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145692679 chr8:145692681 nonsynonymous SNV 0.987 3 23 hm5C_associated_SNPs_22050 0 0 0 0 2 KIFC2 chr8:145692724 5'GT 145692724 Upstream 44bp
chr12 6644003 6644003 1 + G T ESCA 6643991 + 6643971 6644011 41 CGCAGCCGAGCCACATCGCTCAGACACCATGGGGAAGGTGA CGCAGCCGAGCCACATCGCTCAGACACCATGGTGAAGGTGA < 41bp 1 0.251049370106281 1 0.201416909694672 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6643991 chr12:6644003 nonsynonymous SNV 0.615 0 33 hm5C_associated_SNPs_22051 0 0 1 0 2 GAPDH chr12:6643976 3'AG 6643976 Downstream 28bp
chr12 6644003 6644003 1 + G T ESCA 6643991 + 6643971 6644011 41 CGCAGCCGAGCCACATCGCTCAGACACCATGGGGAAGGTGA CGCAGCCGAGCCACATCGCTCAGACACCATGGTGAAGGTGA < 41bp 1 0.251049370106281 1 0.201416909694672 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6643991 chr12:6644003 nonsynonymous SNV 0.615 0 33 hm5C_associated_SNPs_22051 0 0 1 0 2 GAPDH chr12:6644027 5'GT 6644027 Upstream 25bp
chr19 806462 806462 1 + C T ESCA 806442 + 806422 806462 41 AACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGC AACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGT < 41bp 1 0.301194210777348 1 0.0571145117282867 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806442 chr19:806462 nonsynonymous SNV 0.010 0 41 hm5C_associated_SNPs_22052 0 0 1 0 2 PTBP1 chr19:806408 3'AG 806408 Downstream 55bp
chr19 806462 806462 1 + C T ESCA 806442 + 806422 806462 41 AACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGC AACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGT < 41bp 1 0.301194210777348 1 0.0571145117282867 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806442 chr19:806462 nonsynonymous SNV 0.010 0 41 hm5C_associated_SNPs_22052 0 0 1 0 2 PTBP1 chr19:806556 5'GT 806556 Upstream 95bp
chr19 806462 806462 1 + C T ESCA 806443 + 806423 806463 41 ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCG ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGTG < 41bp 1 0.442108363705898 1 0.0215251743793488 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806443 chr19:806462 nonsynonymous SNV 0.010 0 40 hm5C_associated_SNPs_22053 0 0 1 0 2 PTBP1 chr19:806408 3'AG 806408 Downstream 55bp
chr19 806462 806462 1 + C T ESCA 806443 + 806423 806463 41 ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCG ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGTG < 41bp 1 0.442108363705898 1 0.0215251743793488 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806443 chr19:806462 nonsynonymous SNV 0.010 0 40 hm5C_associated_SNPs_22053 0 0 1 0 2 PTBP1 chr19:806556 5'GT 806556 Upstream 95bp
chr19 806462 806462 1 + C T ESCA 806444 + 806424 806464 41 CGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG CGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGTGG < 41bp 1 0.475919000492258 1 0.167927891016006 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806444 chr19:806462 nonsynonymous SNV 0.010 0 39 hm5C_associated_SNPs_22054 0 0 1 0 2 PTBP1 chr19:806408 3'AG 806408 Downstream 55bp
chr19 806462 806462 1 + C T ESCA 806444 + 806424 806464 41 CGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG CGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGTGG < 41bp 1 0.475919000492258 1 0.167927891016006 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806444 chr19:806462 nonsynonymous SNV 0.010 0 39 hm5C_associated_SNPs_22054 0 0 1 0 2 PTBP1 chr19:806556 5'GT 806556 Upstream 95bp
chr19 806462 806462 1 + C T ESCA 806445 + 806425 806465 41 GTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGC GTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGTGGC < 41bp 1 0.470400493520915 1 0.433876693248749 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806445 chr19:806462 nonsynonymous SNV 0.010 0 38 hm5C_associated_SNPs_22055 0 0 1 0 2 PTBP1 chr19:806408 3'AG 806408 Downstream 55bp
chr19 806462 806462 1 + C T ESCA 806445 + 806425 806465 41 GTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGC GTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGTGGC < 41bp 1 0.470400493520915 1 0.433876693248749 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806445 chr19:806462 nonsynonymous SNV 0.010 0 38 hm5C_associated_SNPs_22055 0 0 1 0 2 PTBP1 chr19:806556 5'GT 806556 Upstream 95bp
chr19 806462 806462 1 + C T ESCA 806446 + 806426 806466 41 TCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCG TCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGTGGCG < 41bp 1 0.719575078313046 1 0.450169682502747 experiment 0.560849843373909 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806446 chr19:806462 nonsynonymous SNV 0.010 0 37 hm5C_associated_SNPs_22056 0 0 1 0 2 PTBP1 chr19:806408 3'AG 806408 Downstream 55bp
chr19 806462 806462 1 + C T ESCA 806446 + 806426 806466 41 TCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCG TCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGTGGCG < 41bp 1 0.719575078313046 1 0.450169682502747 experiment 0.560849843373909 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806446 chr19:806462 nonsynonymous SNV 0.010 0 37 hm5C_associated_SNPs_22056 0 0 1 0 2 PTBP1 chr19:806556 5'GT 806556 Upstream 95bp
chr19 806462 806462 1 + C T ESCA 806450 + 806430 806470 41 CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGG CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGTGGCGGCGG < 41bp 1 0.0668725721874232 1 0.178160905838013 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806450 chr19:806462 nonsynonymous SNV 0.010 0 33 hm5C_associated_SNPs_22057 0 0 1 0 2 PTBP1 chr19:806408 3'AG 806408 Downstream 55bp
chr19 806462 806462 1 + C T ESCA 806450 + 806430 806470 41 CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGG CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGTGGCGGCGG < 41bp 1 0.0668725721874232 1 0.178160905838013 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806450 chr19:806462 nonsynonymous SNV 0.010 0 33 hm5C_associated_SNPs_22057 0 0 1 0 2 PTBP1 chr19:806556 5'GT 806556 Upstream 95bp
chr19 806462 806462 1 + C T ESCA 806451 + 806431 806471 41 GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGGC GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGTGGCGGCGGC < 41bp 1 0.212714379780819 1 0.183665215969086 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806451 chr19:806462 nonsynonymous SNV 0.010 0 32 hm5C_associated_SNPs_22058 0 0 1 0 2 PTBP1 chr19:806408 3'AG 806408 Downstream 55bp
chr19 806462 806462 1 + C T ESCA 806451 + 806431 806471 41 GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGGC GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGTGGCGGCGGC < 41bp 1 0.212714379780819 1 0.183665215969086 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806451 chr19:806462 nonsynonymous SNV 0.010 0 32 hm5C_associated_SNPs_22058 0 0 1 0 2 PTBP1 chr19:806556 5'GT 806556 Upstream 95bp
chr3 16312569 16312569 1 + C T ESCA 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTCAGCACTTTGCGCCACCTTATTCTAACCAGGTGA < 41bp 1 0.227309827298311 1 0.0677489638328552 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312569 nonsynonymous SNV 0.026 1 28 hm5C_associated_SNPs_22059 0 0 1 0 1 OXNAD1 chr3:16312578 5'GT 16312578 Upstream 10bp
chr1 23236980 23236980 1 + C T ESCA 23236971 + 23236951 23236991 41 TGGACTGTTGGCAGAAGGACCGCAACCACCGGCCCAAGTTC TGGACTGTTGGCAGAAGGACCGCAACCACTGGCCCAAGTTC < 41bp 1 0.450900276474889 1 0.381707668304443 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23236971 chr1:23236980 nonsynonymous SNV 0.998 5 30 hm5C_associated_SNPs_22060 0 0 0 0 1 EPHB2 chr1:23237068 5'GT 23237068 Upstream 89bp
chr1 163042230 163042230 1 + T A ESCA 163042250 + 163042230 163042270 41 TGATTCCTGTGAACACAATTCTTCCCACAACAAGAAGGACA AGATTCCTGTGAACACAATTCTTCCCACAACAAGAAGGACA < 41bp 1 0.120929028716206 1 0.0626991093158722 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RGS4 ENSG00000117152 CDS Human protein_coding chr1:163042250 chr1:163042230 synonymous SNV . 0 1 hm5C_associated_SNPs_22062 0 0 0 0 2 RGS4 chr1:163042185 3'AG 163042185 Downstream 46bp
chr1 163042230 163042230 1 + T A ESCA 163042250 + 163042230 163042270 41 TGATTCCTGTGAACACAATTCTTCCCACAACAAGAAGGACA AGATTCCTGTGAACACAATTCTTCCCACAACAAGAAGGACA < 41bp 1 0.120929028716206 1 0.0626991093158722 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RGS4 ENSG00000117152 CDS Human protein_coding chr1:163042250 chr1:163042230 synonymous SNV . 0 1 hm5C_associated_SNPs_22062 0 0 0 0 2 RGS4 chr1:163042289 5'GT 163042289 Upstream 60bp
chr19 10789847 10789847 1 + C T ESCA 10789854 + 10789834 10789874 41 CTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG CTCGCGTGCCCACTTGGGGTCCCCTCCGAGGCTGGGTAAGG < 41bp 1 0.0832642834037425 1 0.0820710062980652 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789854 chr19:10789847 synonymous SNV . 0 14 hm5C_associated_SNPs_22063 0 0 1 0 2 ILF3 chr19:10789773 3'AG 10789773 Downstream 75bp
chr19 10789847 10789847 1 + C T ESCA 10789854 + 10789834 10789874 41 CTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG CTCGCGTGCCCACTTGGGGTCCCCTCCGAGGCTGGGTAAGG < 41bp 1 0.0832642834037425 1 0.0820710062980652 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789854 chr19:10789847 synonymous SNV . 0 14 hm5C_associated_SNPs_22063 0 0 1 0 2 ILF3 chr19:10789868 5'GT 10789868 Upstream 22bp
chr19 10789847 10789847 1 + C T ESCA 10789855 + 10789835 10789875 41 TCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC TCGCGTGCCCACTTGGGGTCCCCTCCGAGGCTGGGTAAGGC < 41bp 1 0.0360555522503535 1 0.0905439555644989 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789855 chr19:10789847 synonymous SNV . 0 13 hm5C_associated_SNPs_22064 0 0 1 0 2 ILF3 chr19:10789773 3'AG 10789773 Downstream 75bp
chr19 10789847 10789847 1 + C T ESCA 10789855 + 10789835 10789875 41 TCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC TCGCGTGCCCACTTGGGGTCCCCTCCGAGGCTGGGTAAGGC < 41bp 1 0.0360555522503535 1 0.0905439555644989 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789855 chr19:10789847 synonymous SNV . 0 13 hm5C_associated_SNPs_22064 0 0 1 0 2 ILF3 chr19:10789868 5'GT 10789868 Upstream 22bp
chr17 62525459 62525459 1 + C G ESCA 62525477 + 62525457 62525497 41 CTCCAGTTAACAAACACAAACAGTTCCACTTGGAGAGAAAA CTGCAGTTAACAAACACAAACAGTTCCACTTGGAGAGAAAA < 41bp 1 0.155996189585507 1 0.195197641849518 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP95 ENSG00000258890 CDS Human protein_coding chr17:62525477 chr17:62525459 nonsynonymous SNV 0.481 1 3 hm5C_associated_SNPs_22065 0 0 1 0 2 CEP95 chr17:62525406 3'AG 62525406 Downstream 54bp
chr17 62525459 62525459 1 + C G ESCA 62525477 + 62525457 62525497 41 CTCCAGTTAACAAACACAAACAGTTCCACTTGGAGAGAAAA CTGCAGTTAACAAACACAAACAGTTCCACTTGGAGAGAAAA < 41bp 1 0.155996189585507 1 0.195197641849518 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP95 ENSG00000258890 CDS Human protein_coding chr17:62525477 chr17:62525459 nonsynonymous SNV 0.481 1 3 hm5C_associated_SNPs_22065 0 0 1 0 2 CEP95 chr17:62525545 5'GT 62525545 Upstream 87bp
chr1 164789343 164789343 1 + A T ESCA 164789352 + 164789332 164789372 41 TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA TCAAACTCTGGTGATTTGTTCATGAGCGTGCAGTCACTCAA < 41bp 1 0.586069049769059 1 0.191355288028717 experiment 0.827861900461881 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789352 chr1:164789343 synonymous SNV . 0 12 hm5C_associated_SNPs_22066 0 0 0 0 2 PBX1 chr1:164789309 3'AG 164789309 Downstream 35bp
chr1 164789343 164789343 1 + A T ESCA 164789352 + 164789332 164789372 41 TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA TCAAACTCTGGTGATTTGTTCATGAGCGTGCAGTCACTCAA < 41bp 1 0.586069049769059 1 0.191355288028717 experiment 0.827861900461881 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789352 chr1:164789343 synonymous SNV . 0 12 hm5C_associated_SNPs_22066 0 0 0 0 2 PBX1 chr1:164789421 5'GT 164789421 Upstream 79bp
chr15 69003150 69003150 1 + G A ESCA 69003148 + 69003128 69003168 41 CTGGAGCTGCACGGGCACAGCCGGCGTGTGGGGCTGGTCGA CTGGAGCTGCACGGGCACAGCCAGCGTGTGGGGCTGGTCGA < 41bp 1 0.448426009628495 1 0.42527836561203 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CORO2B ENSG00000103647 CDS Human protein_coding chr15:69003148 chr15:69003150 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_22067 0 0 0 0 2 CORO2B chr15:69003071 3'AG 69003071 Downstream 80bp
chr15 69003150 69003150 1 + G A ESCA 69003148 + 69003128 69003168 41 CTGGAGCTGCACGGGCACAGCCGGCGTGTGGGGCTGGTCGA CTGGAGCTGCACGGGCACAGCCAGCGTGTGGGGCTGGTCGA < 41bp 1 0.448426009628495 1 0.42527836561203 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CORO2B ENSG00000103647 CDS Human protein_coding chr15:69003148 chr15:69003150 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_22067 0 0 0 0 2 CORO2B chr15:69003220 5'GT 69003220 Upstream 71bp
chr6 31638955 31638955 1 + G A ESCA 31638959 + 31638939 31638979 41 TTCCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAAGAC TTCCCGACATCCGGACATGCCACTTCTGCCTCGTAGAAGAC < 41bp 1 0.363361030465076 1 0.046382874250412 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LY6G5B ENSG00000240053;ENSG00000263020 CDS Human other chr6:31638959 chr6:31638955 nonsynonymous SNV 0.196 0 17 hm5C_associated_SNPs_22069 0 0 1 0 1 LY6G5B chr6:31638933 3'AG 31638933 Downstream 23bp
chr6 31638955 31638955 1 + G A ESCA 31638961 + 31638941 31638981 41 CCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAAGACCC CCCGACATCCGGACATGCCACTTCTGCCTCGTAGAAGACCC < 41bp 1 0.332648894374739 1 0.0381271541118622 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LY6G5B ENSG00000240053;ENSG00000263020 CDS Human other chr6:31638961 chr6:31638955 nonsynonymous SNV 0.196 0 15 hm5C_associated_SNPs_22070 0 0 1 0 1 LY6G5B chr6:31638933 3'AG 31638933 Downstream 23bp
chr19 45260408 45260408 1 + G C ESCA 45260397 + 45260377 45260417 41 CCGCTCACCTGGCGTGCGAGCACCGCAGCCCGACCTGCCTG CCGCTCACCTGGCGTGCGAGCACCGCAGCCCCACCTGCCTG < 41bp 1 0.670911264110946 1 0.278014838695526 experiment 0.658177471778107 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCL3 ENSG00000069399 CDS Human protein_coding chr19:45260397 chr19:45260408 synonymous SNV . 0 32 hm5C_associated_SNPs_22072 0 0 0 0 1 BCL3 chr19:45260478 5'GT 45260478 Upstream 71bp
chr11 597555 597555 1 + G A ESCA 597568 + 597548 597588 41 TCTCCACGGCCAGGAGGGTCCAGGTGGGTGGCCCAGCCCTG TCTCCACAGCCAGGAGGGTCCAGGTGGGTGGCCCAGCCCTG < 41bp 1 0.71885910538021 1 0.793864846229553 experiment 0.562281789239579 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:597568 chr11:597555 synonymous SNV . 0 8 hm5C_associated_SNPs_22073 0 0 1 0 1 PHRF1 chr11:597570 5'GT 597570 Upstream 16bp
chr14 21462709 21462709 1 + A T ESCA 21462722 + 21462702 21462742 41 GTGGTTCAGAATCTGGGGAGCCTTATATTCCAGGTGTCTTT GTGGTTCTGAATCTGGGGAGCCTTATATTCCAGGTGTCTTT < 41bp 1 0.0793411261396483 1 0.015850841999054 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL17 ENSG00000165792 CDS Human protein_coding chr14:21462722 chr14:21462709 synonymous SNV . 0 8 hm5C_associated_SNPs_22074 0 0 1 0 1 METTL17 chr14:21462702 3'AG 21462702 Downstream 8bp
chr1 36028834 36028834 1 + G A ESCA 36028846 + 36028826 36028866 41 ACCTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAG ACCTGACCATTGAAGATGGGCCCCGGGAGATCCTGATCAAG < 41bp 1 0.216109549012321 1 0.096791684627533 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028846 chr1:36028834 nonsynonymous SNV 0.107 1 9 hm5C_associated_SNPs_22075 0 0 1 0 1 NCDN chr1:36028803 3'AG 36028803 Downstream 32bp
chr1 36028834 36028834 1 + G A ESCA 36028847 + 36028827 36028867 41 CCTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAGG CCTGACCATTGAAGATGGGCCCCGGGAGATCCTGATCAAGG < 41bp 1 0.308574508597665 1 0.183249324560165 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028847 chr1:36028834 nonsynonymous SNV 0.107 1 8 hm5C_associated_SNPs_22076 0 0 1 0 1 NCDN chr1:36028803 3'AG 36028803 Downstream 32bp
chr1 36028834 36028834 1 + G A ESCA 36028848 + 36028828 36028868 41 CTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAGGA CTGACCATTGAAGATGGGCCCCGGGAGATCCTGATCAAGGA < 41bp 1 0.464777922391329 1 0.464704573154449 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028848 chr1:36028834 nonsynonymous SNV 0.107 1 7 hm5C_associated_SNPs_22077 0 0 1 0 1 NCDN chr1:36028803 3'AG 36028803 Downstream 32bp
chr19 52714685 52714685 1 + G A ESCA 52714692 + 52714672 52714712 41 CGCACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCG CGCACCTCGGCCTACGGCCTCTTCTCCGTCTGCTACCCCCG < 41bp 1 0.390377984968584 1 0.0599322617053986 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52714692 chr19:52714685 nonsynonymous SNV 0.993 4 14 hm5C_associated_SNPs_22078 0 0 1 0 1 PPP2R1A chr19:52714745 5'GT 52714745 Upstream 61bp
chr19 52714685 52714685 1 + G A ESCA 52714695 + 52714675 52714715 41 ACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCGAGT ACCTCGGCCTACGGCCTCTTCTCCGTCTGCTACCCCCGAGT < 41bp 1 0.748650143222817 1 0.892284452915192 experiment 0.502699713554366 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52714695 chr19:52714685 nonsynonymous SNV 0.993 4 11 hm5C_associated_SNPs_22079 0 0 1 0 1 PPP2R1A chr19:52714745 5'GT 52714745 Upstream 61bp
chr7 100867224 100867224 1 + G A ESCA 100867232 + 100867212 100867252 41 CTGCAGGTGTCTGAAGTGGACTGTGTGAGCCTGGGCATTCC CTGCAGGTGTCTAAAGTGGACTGTGTGAGCCTGGGCATTCC < 41bp 1 0.606549247047665 1 0.0596912205219269 experiment 0.78690150590467 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100867232 chr7:100867224 synonymous SNV . 0 13 hm5C_associated_SNPs_22080 0 0 1 0 1 ZNHIT1 chr7:100867218 3'AG 100867218 Downstream 7bp
chr7 100867224 100867224 1 + G A ESCA 100867242 + 100867222 100867262 41 CTGAAGTGGACTGTGTGAGCCTGGGCATTCCCAGAGAGGAA CTAAAGTGGACTGTGTGAGCCTGGGCATTCCCAGAGAGGAA < 41bp 1 0.774511257040265 1 0.265451550483704 experiment 0.45097748591947 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100867242 chr7:100867224 synonymous SNV . 0 3 hm5C_associated_SNPs_22081 0 0 1 0 1 ZNHIT1 chr7:100867218 3'AG 100867218 Downstream 7bp
chr3 170110118 170110118 1 + G T ESCA 170110100 + 170110080 170110120 41 GAGGCCGATAGGCAAGAACTCCAAGATGAACTCAGACAGGA GAGGCCGATAGGCAAGAACTCCAAGATGAACTCAGACATGA < 41bp 1 0.492021411889352 1 0.322549015283585 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIL ENSG00000136603 CDS Human protein_coding chr3:170110100 chr3:170110118 nonsynonymous SNV 0.993 2 39 hm5C_associated_SNPs_22082 0 0 1 0 1 SKIL chr3:170110047 3'AG 170110047 Downstream 72bp
chr3 170110118 170110118 1 + G T ESCA 170110110 + 170110090 170110130 41 GGCAAGAACTCCAAGATGAACTCAGACAGGAACGGGAAGCA GGCAAGAACTCCAAGATGAACTCAGACATGAACGGGAAGCA < 41bp 1 0.598554371637362 1 0.180947780609131 experiment 0.802891256725276 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIL ENSG00000136603 CDS Human protein_coding chr3:170110110 chr3:170110118 nonsynonymous SNV 0.993 2 29 hm5C_associated_SNPs_22083 0 0 1 0 1 SKIL chr3:170110047 3'AG 170110047 Downstream 72bp
chr5 145641103 145641103 1 + C A ESCA 145641091 + 145641071 145641111 41 AGGTTGCTTTTAAGGGTGACCCAGAAGCAGCCCTAATCCAA AGGTTGCTTTTAAGGGTGACCCAGAAGCAGCCATAATCCAA < 41bp 1 0.379630556143979 1 0.241732627153397 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM27 ENSG00000091009 CDS Human protein_coding chr5:145641091 chr5:145641103 nonsynonymous SNV 0.956 3 33 hm5C_associated_SNPs_22084 0 0 1 0 1 RBM27 chr5:145641073 3'AG 145641073 Downstream 31bp
chr6 43168191 43168191 1 + C T ESCA 43168200 + 43168180 43168220 41 CTGGGCCAGATCGAAGACCACAGACGAACCCACCAACCCAT CTGGGCCAGATTGAAGACCACAGACGAACCCACCAACCCAT < 41bp 1 0.224488278324292 1 0.302490472793579 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CUL9 ENSG00000112659 CDS Human protein_coding chr6:43168200 chr6:43168191 synonymous SNV . 0 12 hm5C_associated_SNPs_22085 0 0 0 0 1 CUL9 chr6:43168174 3'AG 43168174 Downstream 18bp
chr3 20019889 20019889 1 + G A ESCA 20019890 + 20019870 20019910 41 TGTAAATGAAATATTCATGGCAATAGGTAAGATTAATATCT TGTAAATGAAATATTCATGACAATAGGTAAGATTAATATCT < 41bp 1 0.236159101610772 1 0.161831438541412 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019890 chr3:20019889 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_22086 0 0 0 3 2 RAB5A chr3:20019802 3'AG 20019802 Downstream 88bp
chr3 20019889 20019889 1 + G A ESCA 20019890 + 20019870 20019910 41 TGTAAATGAAATATTCATGGCAATAGGTAAGATTAATATCT TGTAAATGAAATATTCATGACAATAGGTAAGATTAATATCT < 41bp 1 0.236159101610772 1 0.161831438541412 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019890 chr3:20019889 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_22086 0 0 0 3 2 RAB5A chr3:20019895 5'GT 20019895 Upstream 7bp
chr8 121301870 121301870 1 + T G ESCA 121301861 + 121301841 121301881 41 ACCTAGCTACACATTGTTGTCAGTGAGACTTTGGTCAAAGT ACCTAGCTACACATTGTTGTCAGTGAGACGTTGGTCAAAGT < 41bp 1 0.202305040339604 1 0.193993300199509 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121301861 chr8:121301870 synonymous SNV . 0 30 hm5C_associated_SNPs_22087 0 0 0 0 1 COL14A1 chr8:121301847 3'AG 121301847 Downstream 24bp
chr1 180059910 180059910 1 + G C ESCA 180059896 + 180059876 180059916 41 ACTAACAGAGTCAGAACGTTCCAGAGGATCCCTGGAGTCTA ACTAACAGAGTCAGAACGTTCCAGAGGATCCCTGCAGTCTA < 41bp 1 0.511722223486102 1 0.480455905199051 experiment 0.976555553027796 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180059896 chr1:180059910 nonsynonymous SNV 0.899 2 35 hm5C_associated_SNPs_22088 0 0 1 0 2 CEP350 chr1:180059849 3'AG 180059849 Downstream 62bp
chr1 180059910 180059910 1 + G C ESCA 180059896 + 180059876 180059916 41 ACTAACAGAGTCAGAACGTTCCAGAGGATCCCTGGAGTCTA ACTAACAGAGTCAGAACGTTCCAGAGGATCCCTGCAGTCTA < 41bp 1 0.511722223486102 1 0.480455905199051 experiment 0.976555553027796 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180059896 chr1:180059910 nonsynonymous SNV 0.899 2 35 hm5C_associated_SNPs_22088 0 0 1 0 2 CEP350 chr1:180059931 5'GT 180059931 Upstream 22bp
chr15 22945048 22945048 1 + G T ESCA 22945057 + 22945037 22945077 41 CAGGTGGTCACGGGCTCGGGCCGCCAGGAGGCCCAGAAGAC CAGGTGGTCACTGGCTCGGGCCGCCAGGAGGCCCAGAAGAC < 41bp 1 0.125491289065672 1 0.127256989479065 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22945057 chr15:22945048 synonymous SNV . 0 12 hm5C_associated_SNPs_22089 0 0 1 0 1 CYFIP1 chr15:22945040 3'AG 22945040 Downstream 9bp
chr16 5121961 5121961 1 + G A ESCA 5121942 + 5121922 5121962 41 GCGCTGGCGCCGGGGGCGGGCGGCCCGGCATGTAGTAGCGG GCGCTGGCGCCGGGGGCGGGCGGCCCGGCATGTAGTAGCAG < 41bp 1 0.439823182806747 1 0.435712486505508 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5121942 chr16:5121961 synonymous SNV . 0 40 hm5C_associated_SNPs_22090 0 0 1 0 1 ALG1 chr16:5122058 5'GT 5122058 Upstream 98bp
chr16 5121961 5121961 1 + G A ESCA 5121945 + 5121925 5121965 41 CTGGCGCCGGGGGCGGGCGGCCCGGCATGTAGTAGCGGTGG CTGGCGCCGGGGGCGGGCGGCCCGGCATGTAGTAGCAGTGG < 41bp 1 0.505130573023096 1 0.363696098327637 experiment 0.989738853953808 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5121945 chr16:5121961 synonymous SNV . 0 37 hm5C_associated_SNPs_22091 0 0 1 0 1 ALG1 chr16:5122058 5'GT 5122058 Upstream 98bp
chr16 5121961 5121961 1 + G A ESCA 5121946 + 5121926 5121966 41 TGGCGCCGGGGGCGGGCGGCCCGGCATGTAGTAGCGGTGGT TGGCGCCGGGGGCGGGCGGCCCGGCATGTAGTAGCAGTGGT < 41bp 1 0.380840178110472 1 0.693167209625244 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5121946 chr16:5121961 synonymous SNV . 0 36 hm5C_associated_SNPs_22092 0 0 1 0 1 ALG1 chr16:5122058 5'GT 5122058 Upstream 98bp
chr8 92090640 92090640 1 + T C ESCA 92090658 + 92090638 92090678 41 ATTGAAAACTTAACAGGAGCCAGACATATGGAAAGTGAGAA ATCGAAAACTTAACAGGAGCCAGACATATGGAAAGTGAGAA < 41bp 1 0.44332554354136 1 0.391882419586182 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OTUD6B ENSG00000155100 CDS Human protein_coding chr8:92090658 chr8:92090640 synonymous SNV . 0 3 hm5C_associated_SNPs_22093 0 0 1 0 1 OTUD6B chr8:92090584 3'AG 92090584 Downstream 57bp
chr19 13054423 13054423 1 + G A ESCA 13054404 + 13054384 13054424 41 ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACAA < 41bp 1 0.634784764364257 1 0.183927237987518 experiment 0.730430471271487 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054404 chr19:13054423 nonsynonymous SNV 0.973 1 40 hm5C_associated_SNPs_22094 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 73bp
chr19 13054423 13054423 1 + G A ESCA 13054404 + 13054384 13054424 41 ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACAA < 41bp 1 0.634784764364257 1 0.183927237987518 experiment 0.730430471271487 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054404 chr19:13054423 nonsynonymous SNV 0.973 1 40 hm5C_associated_SNPs_22094 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 21bp
chr19 13054423 13054423 1 + G A ESCA 13054406 + 13054386 13054426 41 CACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGAGA CACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACAAGA < 41bp 1 0.716219087333614 1 0.398428320884705 experiment 0.567561825332772 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054406 chr19:13054423 nonsynonymous SNV 0.973 1 38 hm5C_associated_SNPs_22095 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 73bp
chr19 13054423 13054423 1 + G A ESCA 13054406 + 13054386 13054426 41 CACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGAGA CACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACAAGA < 41bp 1 0.716219087333614 1 0.398428320884705 experiment 0.567561825332772 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054406 chr19:13054423 nonsynonymous SNV 0.973 1 38 hm5C_associated_SNPs_22095 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 21bp
chr19 13054423 13054423 1 + G A ESCA 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTGAGGAGTTTGGCAACAAGACGTGGGGCGTAAC < 41bp 1 0.754873076168334 1 0.425011992454529 experiment 0.490253847663331 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054423 nonsynonymous SNV 0.973 1 25 hm5C_associated_SNPs_22096 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 73bp
chr19 13054423 13054423 1 + G A ESCA 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTGAGGAGTTTGGCAACAAGACGTGGGGCGTAAC < 41bp 1 0.754873076168334 1 0.425011992454529 experiment 0.490253847663331 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054423 nonsynonymous SNV 0.973 1 25 hm5C_associated_SNPs_22096 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 21bp
chr19 13054423 13054423 1 + G A ESCA 13054427 + 13054407 13054447 41 TGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA TGAGGAGTTTGGCAACAAGACGTGGGGCGTAACAAAGGTGA < 41bp 1 0.741656599936281 1 0.437646627426147 experiment 0.516686800127438 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054427 chr19:13054423 nonsynonymous SNV 0.973 1 17 hm5C_associated_SNPs_22097 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 73bp
chr19 13054423 13054423 1 + G A ESCA 13054427 + 13054407 13054447 41 TGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA TGAGGAGTTTGGCAACAAGACGTGGGGCGTAACAAAGGTGA < 41bp 1 0.741656599936281 1 0.437646627426147 experiment 0.516686800127438 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054427 chr19:13054423 nonsynonymous SNV 0.973 1 17 hm5C_associated_SNPs_22097 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 21bp
chr18 74625774 74625774 1 + A G ESCA 74625764 + 74625744 74625784 41 TGAAGCAGCATGTGCGGTCGCACACCGGGGAAAAGCCCTAC TGAAGCAGCATGTGCGGTCGCACACCGGGGGAAAGCCCTAC < 41bp 1 0.306200238978473 1 0.0665511190891266 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74625764 chr18:74625774 nonsynonymous SNV 0.980 4 31 hm5C_associated_SNPs_22098 0 0 0 0 2 ZNF236 chr18:74625703 3'AG 74625703 Downstream 72bp
chr18 74625774 74625774 1 + A G ESCA 74625764 + 74625744 74625784 41 TGAAGCAGCATGTGCGGTCGCACACCGGGGAAAAGCCCTAC TGAAGCAGCATGTGCGGTCGCACACCGGGGGAAAGCCCTAC < 41bp 1 0.306200238978473 1 0.0665511190891266 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74625764 chr18:74625774 nonsynonymous SNV 0.980 4 31 hm5C_associated_SNPs_22098 0 0 0 0 2 ZNF236 chr18:74625854 5'GT 74625854 Upstream 81bp
chr19 50169243 50169243 1 + G C ESCA 50169236 + 50169216 50169256 41 CCCGGCCCAGTGCGCAGGCGCGGGAAAGTTGAACTAATAAA CCCGGCCCAGTGCGCAGGCGCGGGAAACTTGAACTAATAAA < 41bp 1 0.730928679189407 1 0.748269259929657 experiment 0.538142641621186 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCL2L12 ENSG00000126453 CDS Human protein_coding chr19:50169236 chr19:50169243 nonsynonymous SNV 0.999 3 28 hm5C_associated_SNPs_22099 0 0 0 0 1 BCL2L12 chr19:50169324 5'GT 50169324 Upstream 82bp
chr16 12662432 12662432 1 + C T ESCA 12662431 + 12662411 12662451 41 TTCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGA TTCCCGCTTCCCCAAACTGTCTCGGGGTCAGCCCCGGGAGA < 41bp 1 0.557527142397002 1 0.653680503368378 experiment 0.884945715205996 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662431 chr16:12662432 synonymous SNV . 0 22 hm5C_associated_SNPs_22100 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 70bp
chr16 12662432 12662432 1 + C T ESCA 12662433 + 12662413 12662453 41 CCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGACC CCCGCTTCCCCAAACTGTCTCGGGGTCAGCCCCGGGAGACC < 41bp 1 0.522952083313185 1 0.95572429895401 experiment 0.95409583337363 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662433 chr16:12662432 synonymous SNV . 0 20 hm5C_associated_SNPs_22101 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 70bp
chr16 12662432 12662432 1 + C T ESCA 12662443 + 12662423 12662463 41 CAAACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAACGTGG CAAACTGTCTCGGGGTCAGCCCCGGGAGACCCGCAACGTGG < 41bp 1 0.361674338712153 1 0.548347651958466 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662443 chr16:12662432 synonymous SNV . 0 10 hm5C_associated_SNPs_22102 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 70bp
chr16 12662432 12662432 1 + C T ESCA 12662444 + 12662424 12662464 41 AAACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAACGTGGA AAACTGTCTCGGGGTCAGCCCCGGGAGACCCGCAACGTGGA < 41bp 1 0.216951223210242 1 0.794898152351379 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662444 chr16:12662432 synonymous SNV . 0 9 hm5C_associated_SNPs_22103 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 70bp
chr16 12662432 12662432 1 + C T ESCA 12662445 + 12662425 12662465 41 AACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAACGTGGAG AACTGTCTCGGGGTCAGCCCCGGGAGACCCGCAACGTGGAG < 41bp 1 0.703370653388874 1 0.893453359603882 experiment 0.593258693222252 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662445 chr16:12662432 synonymous SNV . 0 8 hm5C_associated_SNPs_22104 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 70bp
chr6 170632194 170632194 1 + G A ESCA 170632211 + 170632191 170632231 41 GCAGAAAGCTACCTGGTGTACAACATCATGAGCAGTGGAGA GCAAAAAGCTACCTGGTGTACAACATCATGAGCAGTGGAGA < 41bp 1 0.521337845325533 1 0.122299343347549 experiment 0.957324309348935 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM120B ENSG00000112584 CDS Human protein_coding chr6:170632211 chr6:170632194 nonsynonymous SNV 0.523 3 4 hm5C_associated_SNPs_22105 0 0 0 0 1 FAM120B chr6:170632167 3'AG 170632167 Downstream 28bp
chr1 200817241 200817241 1 + C A ESCA 200817245 + 200817225 200817265 41 CTCCAAACCGAGGAATCACTCGTTCTATTAGTAATGAAGGA CTCCAAACCGAGGAATAACTCGTTCTATTAGTAATGAAGGA < 41bp 1 0.0876240275333686 1 0.544316470623016 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200817245 chr1:200817241 synonymous SNV . 0 17 hm5C_associated_SNPs_22108 0 0 1 0 1 CAMSAP2 chr1:200817160 3'AG 200817160 Downstream 82bp
chr20 61292523 61292523 1 + C T ESCA 61292526 + 61292506 61292546 41 AAACCATCAGAGACCTGCCTCTGTAAGGACCGGAGTCGGGA AAACCATCAGAGACCTGTCTCTGTAAGGACCGGAGTCGGGA < 41bp 1 0.460953751077654 1 0.402170062065125 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61292526 chr20:61292523 nonsynonymous SNV 0.719 2 18 hm5C_associated_SNPs_22113 0 0 1 1 1 SLCO4A1 chr20:61292527 5'GT 61292527 Upstream 5bp
chr22 23596130 23596130 1 + A T ESCA 23596125 + 23596105 23596145 41 AGCAGCAAGGGCAGGGGCAGCCGGGATGCGCTGGTCTCGGG AGCAGCAAGGGCAGGGGCAGCCGGGTTGCGCTGGTCTCGGG < 41bp 1 0.677886115924666 1 0.775119781494141 experiment 0.644227768150667 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23596125 chr22:23596130 nonsynonymous SNV 0.631 3 26 hm5C_associated_SNPs_22114 0 0 1 0 1 BCR chr22:23596167 5'GT 23596167 Upstream 38bp
chr1 2330933 2330933 1 + C T ESCA 2330951 + 2330931 2330971 41 TCCTTCCTTAATGGAAGACTCAGGTAGGGTAGCGGCTGTGC TCTTTCCTTAATGGAAGACTCAGGTAGGGTAGCGGCTGTGC < 41bp 1 0.780321583381396 1 0.474068462848663 experiment 0.439356833237207 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RER1 ENSG00000157916 CDS Human protein_coding chr1:2330951 chr1:2330933 nonsynonymous SNV 0.999 4 3 hm5C_associated_SNPs_22115 0 0 1 0 1 RER1 chr1:2330953 5'GT 2330953 Upstream 21bp
chr22 24237106 24237106 1 + G T ESCA 24237096 + 24237076 24237116 41 TACAGCAAGCTGCTGTGCGGCCTGCTGGCCGAGCGCCTGCG TACAGCAAGCTGCTGTGCGGCCTGCTGGCCTAGCGCCTGCG < 41bp 1 0.112844389867542 1 0.0822210013866425 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237096 chr22:24237106 stopgain 0.973 1 31 hm5C_associated_SNPs_22116 0 0 1 0 1 MIF chr22:24237131 5'GT 24237131 Upstream 26bp
chr22 24237106 24237106 1 + G T ESCA 24237109 + 24237089 24237129 41 TGTGCGGCCTGCTGGCCGAGCGCCTGCGCATCAGCCCGGAC TGTGCGGCCTGCTGGCCTAGCGCCTGCGCATCAGCCCGGAC < 41bp 1 0.669682042380514 1 0.173516005277634 experiment 0.660635915238971 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237109 chr22:24237106 stopgain 0.973 1 18 hm5C_associated_SNPs_22117 0 0 1 0 1 MIF chr22:24237131 5'GT 24237131 Upstream 26bp
chr22 24237106 24237106 1 + G T ESCA 24237117 + 24237097 24237137 41 CTGCTGGCCGAGCGCCTGCGCATCAGCCCGGACAGGTACGC CTGCTGGCCTAGCGCCTGCGCATCAGCCCGGACAGGTACGC < 41bp 1 0.567583018625638 1 0.174225598573685 experiment 0.864833962748725 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237117 chr22:24237106 stopgain 0.973 1 10 hm5C_associated_SNPs_22118 0 0 1 0 1 MIF chr22:24237131 5'GT 24237131 Upstream 26bp
chr22 24237106 24237106 1 + G T ESCA 24237120 + 24237100 24237140 41 CTGGCCGAGCGCCTGCGCATCAGCCCGGACAGGTACGCGGA CTGGCCTAGCGCCTGCGCATCAGCCCGGACAGGTACGCGGA < 41bp 1 0.524970614864057 1 0.357412576675415 experiment 0.950058770271886 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237120 chr22:24237106 stopgain 0.973 1 7 hm5C_associated_SNPs_22119 0 0 1 0 1 MIF chr22:24237131 5'GT 24237131 Upstream 26bp
chr15 40509785 40509785 1 + G T ESCA 40509796 + 40509776 40509816 41 GTGCAGCTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGT GTGCAGCTGTATGTTTTTACCCTCAGCGGCTTTCGGACTGT < 41bp 1 0.330106641322102 1 0.0616757273674011 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BUB1B ENSG00000156970 CDS Human protein_coding chr15:40509796 chr15:40509785 nonsynonymous SNV 0.995 2 10 hm5C_associated_SNPs_22127 0 0 1 0 2 BUB1B chr15:40509697 3'AG 40509697 Downstream 89bp
chr15 40509785 40509785 1 + G T ESCA 40509796 + 40509776 40509816 41 GTGCAGCTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGT GTGCAGCTGTATGTTTTTACCCTCAGCGGCTTTCGGACTGT < 41bp 1 0.330106641322102 1 0.0616757273674011 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BUB1B ENSG00000156970 CDS Human other chr15:40509796 chr15:40509785 nonsynonymous SNV 0.995 2 10 hm5C_associated_SNPs_22127 0 0 1 0 2 BUB1B chr15:40509868 5'GT 40509868 Upstream 84bp
chr15 40509785 40509785 1 + G T ESCA 40509802 + 40509782 40509822 41 CTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGTACAGAT CTGTATGTTTTTACCCTCAGCGGCTTTCGGACTGTACAGAT < 41bp 1 0.365554031563449 1 0.582546353340149 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BUB1B ENSG00000156970 CDS Human protein_coding chr15:40509802 chr15:40509785 nonsynonymous SNV 0.995 2 4 hm5C_associated_SNPs_22128 0 0 1 0 2 BUB1B chr15:40509697 3'AG 40509697 Downstream 89bp
chr15 40509785 40509785 1 + G T ESCA 40509802 + 40509782 40509822 41 CTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGTACAGAT CTGTATGTTTTTACCCTCAGCGGCTTTCGGACTGTACAGAT < 41bp 1 0.365554031563449 1 0.582546353340149 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BUB1B ENSG00000156970 CDS Human other chr15:40509802 chr15:40509785 nonsynonymous SNV 0.995 2 4 hm5C_associated_SNPs_22128 0 0 1 0 2 BUB1B chr15:40509868 5'GT 40509868 Upstream 84bp
chr7 142457375 142457375 1 + C G ESCA 142457358 + 142457338 142457378 41 GAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTG GAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTGGTG < 41bp 1 0.0382867590790145 1 0.0283523499965668 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457358 chr7:142457375 nonsynonymous SNV 0.046 1 38 hm5C_associated_SNPs_22129 0 0 0 1 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 1bp
chr7 142457375 142457375 1 + C G ESCA 142457359 + 142457339 142457379 41 AATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTGA AATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTGGTGA < 41bp 1 0.174388506006905 1 0.317447125911713 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457359 chr7:142457375 nonsynonymous SNV 0.046 1 37 hm5C_associated_SNPs_22130 0 0 0 1 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 1bp
chr7 142457375 142457375 1 + C G ESCA 142457367 + 142457347 142457387 41 CCTGATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATG CCTGATCCTTACCTTTGTGGCAGCTGCTGGTGAGTATCATG < 41bp 1 0.335676629416038 1 0.170626759529114 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457367 chr7:142457375 nonsynonymous SNV 0.046 1 29 hm5C_associated_SNPs_22131 0 0 0 1 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 1bp
chr7 142457375 142457375 1 + C G ESCA 142457370 + 142457350 142457390 41 GATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCC GATCCTTACCTTTGTGGCAGCTGCTGGTGAGTATCATGCCC < 41bp 1 0.395646456349332 1 0.204790323972702 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457370 chr7:142457375 nonsynonymous SNV 0.046 1 26 hm5C_associated_SNPs_22132 0 0 0 1 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 1bp
chr7 142457375 142457375 1 + C G ESCA 142457373 + 142457353 142457393 41 CCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCCTGC CCTTACCTTTGTGGCAGCTGCTGGTGAGTATCATGCCCTGC < 41bp 1 0.638695516594574 1 0.32762399315834 experiment 0.722608966810853 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457373 chr7:142457375 nonsynonymous SNV 0.046 1 23 hm5C_associated_SNPs_22133 0 0 0 1 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 1bp
chr22 42032238 42032238 1 + A G ESCA 42032243 + 42032223 42032263 41 ATATTTACGTCTTACAGGAGCTGGATAATCCAGGTCAGTAA ATATTTACGTCTTACGGGAGCTGGATAATCCAGGTCAGTAA < 41bp 1 0.72402986123915 1 0.476130306720734 experiment 0.551940277521699 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control XRCC6;XRCC6 ENSG00000196419;ENSG00000196419 exonic;splicing Human protein_coding chr22:42032243 chr22:42032238 nonsynonymous SNV 0.999 4 16 hm5C_associated_SNPs_22134 0 0 1 0 1 XRCC6 chr22:42032255 5'GT 42032255 Upstream 18bp
chr19 50158059 50158059 1 + G T ESCA 50158043 + 50158023 50158063 41 CTGGGGGGCTGCGGTTCGACCCCCCCCACCCCCACCGGGCT CTGGGGGGCTGCGGTTCGACCCCCCCCACCCCCACCTGGCT < 41bp 1 0.106303238480293 1 0.125693291425705 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50158043 chr19:50158059 nonsynonymous SNV 0.974 4 37 hm5C_associated_SNPs_22136 0 0 1 0 1 SCAF1 chr19:50158127 5'GT 50158127 Upstream 69bp
chr3 183882071 183882071 1 + G A ESCA 183882074 + 183882054 183882094 41 GCTGGTGTCAGCTGAGGGCTCACACCCAGACCCAGCCCCCT GCTGGTGTCAGCTGAGGACTCACACCCAGACCCAGCCCCCT < 41bp 1 0.337662489208882 1 0.288376331329346 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DVL3 ENSG00000161202 CDS Human protein_coding chr3:183882074 chr3:183882071 nonsynonymous SNV 0.997 4 18 hm5C_associated_SNPs_22137 0 0 1 0 1 DVL3 chr3:183882055 3'AG 183882055 Downstream 17bp
chr20 3564710 3564710 1 + A G ESCA 3564722 + 3564702 3564742 41 GGAATGGTATACGATGAGCACCTGCCCCCGTAAGTGAAAAA GGAATGGTGTACGATGAGCACCTGCCCCCGTAAGTGAAAAA < 41bp 1 0.041832730421973 1 0.177984535694122 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATRN ENSG00000088812 CDS Human protein_coding chr20:3564722 chr20:3564710 nonsynonymous SNV 0.994 3 9 hm5C_associated_SNPs_22138 0 0 1 0 1 ATRN chr20:3564730 5'GT 3564730 Upstream 21bp
chrX 153627911 153627911 1 + G A ESCA 153627896 + 153627876 153627916 41 ATGAGTTTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT ATGAGTTTCCGCTTTGTGGCCACATGGTGTCAGATAAATAT < 41bp 1 0.249648014394724 1 0.445799082517624 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627896 chrX:153627911 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_22139 0 0 1 0 2 RPL10 chrX:153627828 3'AG 153627828 Downstream 84bp
chrX 153627911 153627911 1 + G A ESCA 153627896 + 153627876 153627916 41 ATGAGTTTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT ATGAGTTTCCGCTTTGTGGCCACATGGTGTCAGATAAATAT < 41bp 1 0.249648014394724 1 0.445799082517624 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627896 chrX:153627911 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_22139 0 0 1 0 2 RPL10 chrX:153627935 5'GT 153627935 Upstream 25bp
chr6 31708323 31708323 1 + C T ESCA 31708322 + 31708302 31708342 41 CCTCCTCCGGCTTCCCCAGCCCGGCCCCAGTGCCGGGCCCC CCTCCTCCGGCTTCCCCAGCCTGGCCCCAGTGCCGGGCCCC < 41bp 1 0.421719389813207 1 0.396922320127487 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MSH5 ENSG00000204410;ENSG00000255152 CDS Human other chr6:31708322 chr6:31708323 nonsynonymous SNV 0.371 0 22 hm5C_associated_SNPs_22140 0 0 1 0 2 MSH5-SAPCD1 chr6:31708231 3'AG 31708231 Downstream 93bp
chr6 31708323 31708323 1 + C T ESCA 31708322 + 31708302 31708342 41 CCTCCTCCGGCTTCCCCAGCCCGGCCCCAGTGCCGGGCCCC CCTCCTCCGGCTTCCCCAGCCTGGCCCCAGTGCCGGGCCCC < 41bp 1 0.421719389813207 1 0.396922320127487 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MSH5 ENSG00000204410;ENSG00000255152 CDS Human other chr6:31708322 chr6:31708323 nonsynonymous SNV 0.371 0 22 hm5C_associated_SNPs_22140 0 0 1 0 2 MSH5 chr6:31708390 5'GT 31708390 Upstream 68bp
chr12 104492154 104492154 1 + A T ESCA 104492140 + 104492120 104492160 41 GAAAGAGACTCCTTCAAATCCAGTGGCCACAGTGAAAGCGG GAAAGAGACTCCTTCAAATCCAGTGGCCACAGTGTAAGCGG < 41bp 1 0.563052640764914 1 0.452411890029907 experiment 0.873894718470172 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104492140 chr12:104492154 stopgain 0.956 0 35 hm5C_associated_SNPs_22141 0 0 0 0 1 HCFC2 chr12:104492121 3'AG 104492121 Downstream 34bp
chr20 39795158 39795158 1 + G T ESCA 39795148 + 39795128 39795168 41 GAGCCTGACCAGAGCACAGGCTGAGCACATGCTAATGCGCG GAGCCTGACCAGAGCACAGGCTGAGCACATTCTAATGCGCG < 41bp 1 0.321149486432559 1 0.248672395944595 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39795148 chr20:39795158 nonsynonymous SNV 0.991 3 31 hm5C_associated_SNPs_22146 0 0 0 0 2 PLCG1 chr20:39795116 3'AG 39795116 Downstream 43bp
chr20 39795158 39795158 1 + G T ESCA 39795148 + 39795128 39795168 41 GAGCCTGACCAGAGCACAGGCTGAGCACATGCTAATGCGCG GAGCCTGACCAGAGCACAGGCTGAGCACATTCTAATGCGCG < 41bp 1 0.321149486432559 1 0.248672395944595 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39795148 chr20:39795158 nonsynonymous SNV 0.991 3 31 hm5C_associated_SNPs_22146 0 0 0 0 2 PLCG1 chr20:39795235 5'GT 39795235 Upstream 78bp
chr1 154215741 154215741 1 + C G ESCA 154215745 + 154215725 154215765 41 TGTGTCTTCAGTGCCTCTGCCTGCGGAGAATGTGACAATCA TGTGTCTTCAGTGCCTGTGCCTGCGGAGAATGTGACAATCA < 41bp 1 0.609638791334067 1 0.394097447395325 experiment 0.780722417331867 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154215745 chr1:154215741 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_22147 0 0 1 0 1 UBAP2L chr1:154215693 3'AG 154215693 Downstream 49bp
chr2 232573421 232573421 1 + C G ESCA 232573427 + 232573407 232573447 41 GTGCCCCACCATGTCAGACGCAGCCGTAGACACCAGCTCCG GTGCCCCACCATGTGAGACGCAGCCGTAGACACCAGCTCCG < 41bp 1 0.640325752114176 1 0.365342646837234 experiment 0.719348495771649 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232573427 chr2:232573421 stopgain 0.999 0 15 hm5C_associated_SNPs_22148 0 0 1 0 1 PTMA chr2:232573461 5'GT 232573461 Upstream 41bp
chr2 232573421 232573421 1 + C G ESCA 232573430 + 232573410 232573450 41 CCCCACCATGTCAGACGCAGCCGTAGACACCAGCTCCGAAA CCCCACCATGTGAGACGCAGCCGTAGACACCAGCTCCGAAA < 41bp 1 0.545452027740186 1 0.300918936729431 experiment 0.909095944519628 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232573430 chr2:232573421 stopgain 0.999 0 12 hm5C_associated_SNPs_22149 0 0 1 0 1 PTMA chr2:232573461 5'GT 232573461 Upstream 41bp
chr2 232573421 232573421 1 + C G ESCA 232573440 + 232573420 232573460 41 TCAGACGCAGCCGTAGACACCAGCTCCGAAATCACCACCAA TGAGACGCAGCCGTAGACACCAGCTCCGAAATCACCACCAA < 41bp 1 0.725152988391545 1 0.434954285621643 experiment 0.54969402321691 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232573440 chr2:232573421 stopgain 0.999 0 2 hm5C_associated_SNPs_22150 0 0 1 0 1 PTMA chr2:232573461 5'GT 232573461 Upstream 41bp
chr19 45162124 45162124 1 + A G ESCA 45162132 + 45162112 45162152 41 TCTATTGGTCCAAATGTTCCCGTGAGGTCCTTTGGCACTGT TCTATTGGTCCAGATGTTCCCGTGAGGTCCTTTGGCACTGT < 41bp 1 0.728767345947169 1 0.593393921852112 experiment 0.542465308105662 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45162132 chr19:45162124 nonsynonymous SNV 0.000 1 13 hm5C_associated_SNPs_22151 0 0 1 0 1 PVR chr19:45162168 5'GT 45162168 Upstream 45bp
chr19 45162124 45162124 1 + A G ESCA 45162140 + 45162120 45162160 41 TCCAAATGTTCCCGTGAGGTCCTTTGGCACTGTCATCTGTG TCCAGATGTTCCCGTGAGGTCCTTTGGCACTGTCATCTGTG < 41bp 1 0.0274694707269061 1 0.0441912114620209 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45162140 chr19:45162124 nonsynonymous SNV 0.000 1 5 hm5C_associated_SNPs_22152 0 0 1 0 1 PVR chr19:45162168 5'GT 45162168 Upstream 45bp
chr3 66419918 66419918 1 + A C ESCA 66419929 + 66419909 66419949 41 TGCCGCTGCAGTCACCACCCCTCTAGACGTGGCAAAGACAA TGCCGCTGCCGTCACCACCCCTCTAGACGTGGCAAAGACAA < 41bp 1 0.437824611901647 1 0.845970630645752 experiment 1 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control SLC25A26 ENSG00000144741 CDS Human protein_coding chr3:66419929 chr3:66419918 synonymous SNV . 0 10 hm5C_associated_SNPs_22153 0 0 1 0 2 SLC25A26 chr3:66419902 3'AG 66419902 Downstream 17bp
chr3 66419918 66419918 1 + A C ESCA 66419929 + 66419909 66419949 41 TGCCGCTGCAGTCACCACCCCTCTAGACGTGGCAAAGACAA TGCCGCTGCCGTCACCACCCCTCTAGACGTGGCAAAGACAA < 41bp 1 0.437824611901647 1 0.845970630645752 experiment 1 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control SLC25A26 ENSG00000144741 CDS Human protein_coding chr3:66419929 chr3:66419918 synonymous SNV . 0 10 hm5C_associated_SNPs_22153 0 0 1 0 2 SLC25A26 chr3:66419966 5'GT 66419966 Upstream 49bp
chr12 13232915 13232915 1 + G C ESCA 13232896 + 13232876 13232916 41 CCAAAATTGGCCGTGGGGAGCTGCGAAGATTTCTCTCTAGG CCAAAATTGGCCGTGGGGAGCTGCGAAGATTTCTCTCTACG < 41bp 1 0.52722015181533 1 0.213467180728912 experiment 0.945559696369339 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234B ENSG00000084444 CDS Human protein_coding chr12:13232896 chr12:13232915 nonsynonymous SNV 0.995 4 40 hm5C_associated_SNPs_22158 0 0 0 1 1 FAM234B chr12:13232943 5'GT 13232943 Upstream 29bp
chr7 129046266 129046266 1 + G T ESCA 129046285 + 129046265 129046305 41 TGTATGTAACTGAAATTGACCCCATCTGTGCCCTGCAAGCC TTTATGTAACTGAAATTGACCCCATCTGTGCCCTGCAAGCC < 41bp 1 0.117911267163725 1 0.0366106331348419 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129046285 chr7:129046266 synonymous SNV . 0 2 hm5C_associated_SNPs_22159 0 0 1 0 2 AHCYL2 chr7:129046219 3'AG 129046219 Downstream 48bp
chr7 129046266 129046266 1 + G T ESCA 129046285 + 129046265 129046305 41 TGTATGTAACTGAAATTGACCCCATCTGTGCCCTGCAAGCC TTTATGTAACTGAAATTGACCCCATCTGTGCCCTGCAAGCC < 41bp 1 0.117911267163725 1 0.0366106331348419 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129046285 chr7:129046266 synonymous SNV . 0 2 hm5C_associated_SNPs_22159 0 0 1 0 2 AHCYL2 chr7:129046307 5'GT 129046307 Upstream 42bp
chr1 168154083 168154083 1 + G T ESCA 168154103 + 168154083 168154123 41 GGGAACCTTACTTGGAGAATCTCTTAAGTTAAAGGTAAATC TGGAACCTTACTTGGAGAATCTCTTAAGTTAAAGGTAAATC < 41bp 1 0.23452677856384 1 0.0886828303337097 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TIPRL ENSG00000143155 CDS Human protein_coding chr1:168154103 chr1:168154083 nonsynonymous SNV 0.993 3 1 hm5C_associated_SNPs_22162 0 0 1 0 2 TIPRL chr1:168154017 3'AG 168154017 Downstream 67bp
chr1 168154083 168154083 1 + G T ESCA 168154103 + 168154083 168154123 41 GGGAACCTTACTTGGAGAATCTCTTAAGTTAAAGGTAAATC TGGAACCTTACTTGGAGAATCTCTTAAGTTAAAGGTAAATC < 41bp 1 0.23452677856384 1 0.0886828303337097 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TIPRL ENSG00000143155 CDS Human protein_coding chr1:168154103 chr1:168154083 nonsynonymous SNV 0.993 3 1 hm5C_associated_SNPs_22162 0 0 1 0 2 TIPRL chr1:168154116 5'GT 168154116 Upstream 34bp
chr12 21207483 21207483 1 + G T ESCA 21207493 + 21207473 21207513 41 GCTTGTACAAGGAAATCTTACGTTTATTTTGTAATTCAAGT GCTTGTACAATGAAATCTTACGTTTATTTTGTAATTCAAGT < 41bp 1 0.0806465111492169 1 0.0696620941162109 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21207493 chr12:21207483 nonsynonymous SNV 0.003 0 11 hm5C_associated_SNPs_22163 0 0 0 0 2 SLCO1B7 chr12:21207386 3'AG 21207386 Downstream 98bp
chr12 21207483 21207483 1 + G T ESCA 21207493 + 21207473 21207513 41 GCTTGTACAAGGAAATCTTACGTTTATTTTGTAATTCAAGT GCTTGTACAATGAAATCTTACGTTTATTTTGTAATTCAAGT < 41bp 1 0.0806465111492169 1 0.0696620941162109 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21207493 chr12:21207483 nonsynonymous SNV 0.003 0 11 hm5C_associated_SNPs_22163 0 0 0 0 2 SLCO1B7 chr12:21207570 5'GT 21207570 Upstream 88bp
chr16 29810459 29810459 1 + G A ESCA 29810478 + 29810458 29810498 41 CGGCTCAACCAGCGCTCCTCCCGCAGTCATGCTGTGCTCCT CAGCTCAACCAGCGCTCCTCCCGCAGTCATGCTGTGCTCCT < 41bp 1 0.615998948232472 1 0.142852038145065 experiment 0.768002103535055 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29810478 chr16:29810459 nonsynonymous SNV 1.000 0 2 hm5C_associated_SNPs_22164 0 0 0 0 1 KIF22 chr16:29810505 5'GT 29810505 Upstream 47bp
chr16 29810459 29810459 1 + G A ESCA 29810479 + 29810459 29810499 41 GGCTCAACCAGCGCTCCTCCCGCAGTCATGCTGTGCTCCTG AGCTCAACCAGCGCTCCTCCCGCAGTCATGCTGTGCTCCTG < 41bp 1 0.756940388612751 1 0.637076020240784 experiment 0.486119222774497 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29810479 chr16:29810459 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_22165 0 0 0 0 1 KIF22 chr16:29810505 5'GT 29810505 Upstream 47bp
chr19 41807528 41807528 1 + G A ESCA 41807534 + 41807514 41807554 41 TTTGTCCCACTGACGAGGACCTAAAAGACCGAACAATAAAG TTTGTCCCACTGACAAGGACCTAAAAGACCGAACAATAAAG < 41bp 1 0.335191764872285 1 0.181960910558701 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41807534 chr19:41807528 nonsynonymous SNV 0.996 4 15 hm5C_associated_SNPs_22166 0 0 1 0 2 HNRNPUL1 chr19:41807441 3'AG 41807441 Downstream 88bp
chr19 41807528 41807528 1 + G A ESCA 41807534 + 41807514 41807554 41 TTTGTCCCACTGACGAGGACCTAAAAGACCGAACAATAAAG TTTGTCCCACTGACAAGGACCTAAAAGACCGAACAATAAAG < 41bp 1 0.335191764872285 1 0.181960910558701 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41807534 chr19:41807528 nonsynonymous SNV 0.996 4 15 hm5C_associated_SNPs_22166 0 0 1 0 2 HNRNPUL1 chr19:41807609 5'GT 41807609 Upstream 82bp
chr3 184106421 184106421 1 + T C ESCA 184106407 + 184106387 184106427 41 CCCACCCCCAGCTGGGGGACCCCATGCAGGCTGATGGGCCC CCCACCCCCAGCTGGGGGACCCCATGCAGGCTGACGGGCCC < 41bp 1 0.20073021272677 1 0.129803776741028 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHRD ENSG00000090539 CDS Human protein_coding chr3:184106407 chr3:184106421 synonymous SNV . 0 35 hm5C_associated_SNPs_22167 0 0 1 0 1 CHRD chr3:184106375 3'AG 184106375 Downstream 47bp
chr6 53660182 53660182 1 + T A ESCA 53660192 + 53660172 53660212 41 GAGCTGCTGCTGGACGCCAACCAGCTCCGCGAGCTGCCCGA GAGCTGCTGCAGGACGCCAACCAGCTCCGCGAGCTGCCCGA < 41bp 1 0.508881431978997 1 0.237465113401413 experiment 0.982237136042006 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53660192 chr6:53660182 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_22168 0 0 0 0 1 LRRC1 chr6:53660213 5'GT 53660213 Upstream 32bp
chrX 154005130 154005130 1 + G A ESCA 154005114 + 154005094 154005134 41 GAAGAAGAAGAAGAAGAAAGCAAAAGAGGTAGAATTGGTTT GAAGAAGAAGAAGAAGAAAGCAAAAGAGGTAGAATTAGTTT < 41bp 1 0.709611778620872 1 0.510643839836121 experiment 0.580776442758257 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DKC1 ENSG00000130826 CDS Human protein_coding chrX:154005114 chrX:154005130 synonymous SNV . 0 37 hm5C_associated_SNPs_22169 0 0 1 0 1 DKC1 chrX:154005074 3'AG 154005074 Downstream 57bp
chrX 154005130 154005130 1 + G A ESCA 154005135 + 154005115 154005155 41 AAAAGAGGTAGAATTGGTTTCTGAGTAGTGAAGGCCACTTG AAAAGAGGTAGAATTAGTTTCTGAGTAGTGAAGGCCACTTG < 41bp 1 0.637270628817031 1 0.539683163166046 experiment 0.725458742365938 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DKC1 ENSG00000130826 CDS Human protein_coding chrX:154005135 chrX:154005130 synonymous SNV . 0 16 hm5C_associated_SNPs_22170 0 0 1 0 1 DKC1 chrX:154005074 3'AG 154005074 Downstream 57bp
chr6 73332285 73332285 1 + G A ESCA 73332282 + 73332262 73332302 41 GTACAACGTGCTGGAGAGACCCCGCGGCTGGGCGTTCATCT GTACAACGTGCTGGAGAGACCCCACGGCTGGGCGTTCATCT < 41bp 1 0.196147889653492 1 0.24203622341156 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KCNQ5 ENSG00000185760 CDS Human protein_coding chr6:73332282 chr6:73332285 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_22171 0 0 0 0 1 KCNQ5 chr6:73332315 5'GT 73332315 Upstream 31bp
chr13 27216440 27216440 1 + G A ESCA 27216436 + 27216416 27216456 41 AGTGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAG AGTGAAGAGGAACATTGAGCCCCGACACTTGTGCCGGGGAG < 41bp 1 0.651603526382532 1 0.457972764968872 experiment 0.696792947234936 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216436 chr13:27216440 synonymous SNV . 0 25 hm5C_associated_SNPs_22174 0 0 1 0 1 WASF3 chr13:27216398 3'AG 27216398 Downstream 43bp
chr13 27216440 27216440 1 + G A ESCA 27216437 + 27216417 27216457 41 GTGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGC GTGAAGAGGAACATTGAGCCCCGACACTTGTGCCGGGGAGC < 41bp 1 0.0945234657365612 1 0.489723443984985 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216437 chr13:27216440 synonymous SNV . 0 24 hm5C_associated_SNPs_22175 0 0 1 0 1 WASF3 chr13:27216398 3'AG 27216398 Downstream 43bp
chr13 27216440 27216440 1 + G A ESCA 27216438 + 27216418 27216458 41 TGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCT TGAAGAGGAACATTGAGCCCCGACACTTGTGCCGGGGAGCT < 41bp 1 0.434213670726278 1 0.329796999692917 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216438 chr13:27216440 synonymous SNV . 0 23 hm5C_associated_SNPs_22176 0 0 1 0 1 WASF3 chr13:27216398 3'AG 27216398 Downstream 43bp
chr13 27216440 27216440 1 + G A ESCA 27216441 + 27216421 27216461 41 AGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCTCTG AGAGGAACATTGAGCCCCGACACTTGTGCCGGGGAGCTCTG < 41bp 1 0.255508848027965 1 0.0860132873058319 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216441 chr13:27216440 synonymous SNV . 0 20 hm5C_associated_SNPs_22177 0 0 1 0 1 WASF3 chr13:27216398 3'AG 27216398 Downstream 43bp
chr13 27216440 27216440 1 + G A ESCA 27216450 + 27216430 27216470 41 TTGAGCCCCGGCACTTGTGCCGGGGAGCTCTGCCTGAAGGG TTGAGCCCCGACACTTGTGCCGGGGAGCTCTGCCTGAAGGG < 41bp 1 0.739925198217992 1 0.872113823890686 experiment 0.520149603564016 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216450 chr13:27216440 synonymous SNV . 0 11 hm5C_associated_SNPs_22178 0 0 1 0 1 WASF3 chr13:27216398 3'AG 27216398 Downstream 43bp
chr1 93988967 93988967 1 + A C ESCA 93988959 + 93988939 93988979 41 AGTTAAATGACTATGCAGGACAGCGAGAAGTTGTAGCAGAA AGTTAAATGACTATGCAGGACAGCGAGACGTTGTAGCAGAA < 41bp 1 0.575677436908341 1 0.239980399608612 experiment 0.848645126183317 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FNBP1L ENSG00000137942 CDS Human protein_coding chr1:93988959 chr1:93988967 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_22180 0 0 1 0 2 FNBP1L chr1:93988901 3'AG 93988901 Downstream 67bp
chr1 93988967 93988967 1 + A C ESCA 93988959 + 93988939 93988979 41 AGTTAAATGACTATGCAGGACAGCGAGAAGTTGTAGCAGAA AGTTAAATGACTATGCAGGACAGCGAGACGTTGTAGCAGAA < 41bp 1 0.575677436908341 1 0.239980399608612 experiment 0.848645126183317 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FNBP1L ENSG00000137942 CDS Human protein_coding chr1:93988959 chr1:93988967 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_22180 0 0 1 0 2 FNBP1L chr1:93989048 5'GT 93989048 Upstream 82bp
chr19 55817695 55817695 1 + G A ESCA 55817715 + 55817695 55817735 41 GTCTTCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTC ATCTTCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTC < 41bp 1 0.113961598349523 1 0.167536675930023 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55817715 chr19:55817695 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_22182 0 0 0 0 1 BRSK1 chr19:55817620 3'AG 55817620 Downstream 76bp
chr6 160481680 160481680 1 + C T ESCA 160481661 + 160481641 160481681 41 AAATTCCTGCATCAAGATATCGACTCTGGGCAAGGGATCCG AAATTCCTGCATCAAGATATCGACTCTGGGCAAGGGATCTG < 41bp 1 0.184973074562655 1 0.254718065261841 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160481661 chr6:160481680 stopgain 0.930 0 40 hm5C_associated_SNPs_22183 0 0 1 0 1 IGF2R chr6:160481749 5'GT 160481749 Upstream 70bp
chr11 120317153 120317153 1 + C T ESCA 120317136 + 120317116 120317156 41 GAGAAGACCTGAGCTCATTCCTGAGGATCTGCATCGCCACT GAGAAGACCTGAGCTCATTCCTGAGGATCTGCATCGCTACT < 41bp 1 0.349677481413439 1 0.383312284946442 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120317136 chr11:120317153 nonsynonymous SNV 0.999 2 38 hm5C_associated_SNPs_22184 0 0 1 0 2 ARHGEF12 chr11:120317112 3'AG 120317112 Downstream 42bp
chr11 120317153 120317153 1 + C T ESCA 120317136 + 120317116 120317156 41 GAGAAGACCTGAGCTCATTCCTGAGGATCTGCATCGCCACT GAGAAGACCTGAGCTCATTCCTGAGGATCTGCATCGCTACT < 41bp 1 0.349677481413439 1 0.383312284946442 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120317136 chr11:120317153 nonsynonymous SNV 0.999 2 38 hm5C_associated_SNPs_22184 0 0 1 0 2 ARHGEF12 chr11:120317217 5'GT 120317217 Upstream 65bp
chr1 6642271 6642271 1 + G A ESCA 6642276 + 6642256 6642296 41 GCAGCTGAGCCTGCTGAGAACAGAAAAGGTACAGCGGTGCC GCAGCTGAGCCTGCTAAGAACAGAAAAGGTACAGCGGTGCC < 41bp 1 0.764728786983071 1 0.645432651042938 experiment 0.470542426033858 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6642276 chr1:6642271 nonsynonymous SNV 0.998 0 16 hm5C_associated_SNPs_22185 0 0 1 0 1 ZBTB48 chr1:6642359 5'GT 6642359 Upstream 89bp
chr11 68125233 68125233 1 + A T ESCA 68125248 + 68125228 68125268 41 TGACCATCGACCTGGAGGAGCAGAAGCTCTACTGGGCTGAC TGACCTTCGACCTGGAGGAGCAGAAGCTCTACTGGGCTGAC < 41bp 1 0.455140885972006 1 0.73647153377533 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68125248 chr11:68125233 nonsynonymous SNV 0.997 3 6 hm5C_associated_SNPs_22186 0 0 1 0 1 LRP5 chr11:68125315 5'GT 68125315 Upstream 83bp
chr6 33653581 33653581 1 + G C ESCA 33653599 + 33653579 33653619 41 GTGAGAACCACAACCGGGACCTGCAGGTGAGTGCCTCGCCA GTCAGAACCACAACCGGGACCTGCAGGTGAGTGCCTCGCCA < 41bp 1 0.664419652019428 1 0.353342026472092 experiment 0.671160695961143 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33653599 chr6:33653581 nonsynonymous SNV 0.979 5 3 hm5C_associated_SNPs_22187 0 0 1 0 1 ITPR3 chr6:33653604 5'GT 33653604 Upstream 24bp
chr22 26242238 26242238 1 + C G ESCA 26242222 + 26242202 26242242 41 TGCCGCGGTGAGGAGGAAAGCCCCGTGCTCCCAGATCAAGC TGCCGCGGTGAGGAGGAAAGCCCCGTGCTCCCAGATGAAGC < 41bp 1 0.296903699855675 1 0.251311957836151 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26242222 chr22:26242238 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_22188 0 0 0 0 1 MYO18B chr22:26242250 5'GT 26242250 Upstream 13bp
chr11 46895129 46895129 1 - G A ESCA 46895143 - 46895123 46895163 41 ACACTGGGCTCTCCCCAAGGCGAGCAGACCTGAACGGCAGC ACACTGGGCTCTCCCCAAGGCGAGCAGACCTGAATGGCAGC < 41bp 1 0.19453163156714 1 0.551026880741119 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP4 ENSG00000134569 CDS Human protein_coding chr11:46895143 chr11:46895129 synonymous SNV . 0 35 hm5C_associated_SNPs_22189 0 0 1 0 1 LRP4 chr11:46895144 3'AG 46895144 Downstream 16bp
chr17 65905779 65905779 1 + C T ESCA 65905785 + 65905765 65905805 41 AATAAAAATAGAGCCTGATTCTGAAAAAGATGAGGTAAAAG AATAAAAATAGAGCTTGATTCTGAAAAAGATGAGGTAAAAG < 41bp 1 0.425105024519386 1 0.726307511329651 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65905785 chr17:65905779 nonsynonymous SNV 0.945 0 15 hm5C_associated_SNPs_22191 0 0 1 0 2 BPTF chr17:65905698 3'AG 65905698 Downstream 82bp
chr17 65905779 65905779 1 + C T ESCA 65905785 + 65905765 65905805 41 AATAAAAATAGAGCCTGATTCTGAAAAAGATGAGGTAAAAG AATAAAAATAGAGCTTGATTCTGAAAAAGATGAGGTAAAAG < 41bp 1 0.425105024519386 1 0.726307511329651 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65905785 chr17:65905779 nonsynonymous SNV 0.945 0 15 hm5C_associated_SNPs_22191 0 0 1 0 2 BPTF chr17:65905877 5'GT 65905877 Upstream 99bp
chr19 50912814 50912814 1 + G A ESCA 50912807 + 50912787 50912827 41 AGCTGGCCAAGGAGACAGACCCCCTCCGGCGCCAGGTCCTG AGCTGGCCAAGGAGACAGACCCCCTCCAGCGCCAGGTCCTG < 41bp 1 0.159349317039599 1 0.0230896174907684 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912807 chr19:50912814 nonsynonymous SNV 0.993 2 28 hm5C_associated_SNPs_22193 1 0 1 0 1 POLD1 chr19:50912776 3'AG 50912776 Downstream 39bp
chr19 50912814 50912814 1 + G A ESCA 50912813 + 50912793 50912833 41 CCAAGGAGACAGACCCCCTCCGGCGCCAGGTCCTGGATGGA CCAAGGAGACAGACCCCCTCCAGCGCCAGGTCCTGGATGGA < 41bp 1 0.426850790666138 1 0.649918854236603 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912813 chr19:50912814 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_22194 1 0 1 0 1 POLD1 chr19:50912776 3'AG 50912776 Downstream 39bp
chr9 91930118 91930118 1 + A G ESCA 91930099 + 91930079 91930119 41 TAACAGGCATGTTATGTTACCCAGAGAACTTTCCAAACAAG TAACAGGCATGTTATGTTACCCAGAGAACTTTCCAAACAGG < 41bp 1 0.601350362219801 1 0.248172223567963 experiment 0.797299275560398 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CKS2 ENSG00000123975 CDS Human protein_coding chr9:91930099 chr9:91930118 synonymous SNV . 0 40 hm5C_associated_SNPs_22195 0 0 1 0 2 CKS2 chr9:91930085 3'AG 91930085 Downstream 34bp
chr9 91930118 91930118 1 + A G ESCA 91930099 + 91930079 91930119 41 TAACAGGCATGTTATGTTACCCAGAGAACTTTCCAAACAAG TAACAGGCATGTTATGTTACCCAGAGAACTTTCCAAACAGG < 41bp 1 0.601350362219801 1 0.248172223567963 experiment 0.797299275560398 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CKS2 ENSG00000123975 CDS Human protein_coding chr9:91930099 chr9:91930118 synonymous SNV . 0 40 hm5C_associated_SNPs_22195 0 0 1 0 2 CKS2 chr9:91930212 5'GT 91930212 Upstream 95bp
chr9 91930118 91930118 1 + A G ESCA 91930100 + 91930080 91930120 41 AACAGGCATGTTATGTTACCCAGAGAACTTTCCAAACAAGT AACAGGCATGTTATGTTACCCAGAGAACTTTCCAAACAGGT < 41bp 1 0.52654876797654 1 0.572045683860779 experiment 0.946902464046921 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CKS2 ENSG00000123975 CDS Human protein_coding chr9:91930100 chr9:91930118 synonymous SNV . 0 39 hm5C_associated_SNPs_22196 0 0 1 0 2 CKS2 chr9:91930085 3'AG 91930085 Downstream 34bp
chr9 91930118 91930118 1 + A G ESCA 91930100 + 91930080 91930120 41 AACAGGCATGTTATGTTACCCAGAGAACTTTCCAAACAAGT AACAGGCATGTTATGTTACCCAGAGAACTTTCCAAACAGGT < 41bp 1 0.52654876797654 1 0.572045683860779 experiment 0.946902464046921 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CKS2 ENSG00000123975 CDS Human protein_coding chr9:91930100 chr9:91930118 synonymous SNV . 0 39 hm5C_associated_SNPs_22196 0 0 1 0 2 CKS2 chr9:91930212 5'GT 91930212 Upstream 95bp
chr12 53685797 53685797 1 + G A ESCA 53685807 + 53685787 53685827 41 GGGAAAGCATGCCCAGCCTCCAAGCACTGCCTGTCACCCGG GGGAAAGCATACCCAGCCTCCAAGCACTGCCTGTCACCCGG < 41bp 1 0.287977297825538 1 0.375829219818115 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53685807 chr12:53685797 nonsynonymous SNV 0.998 0 11 hm5C_associated_SNPs_22197 0 0 0 0 2 ESPL1 chr12:53685768 3'AG 53685768 Downstream 30bp
chr12 53685797 53685797 1 + G A ESCA 53685807 + 53685787 53685827 41 GGGAAAGCATGCCCAGCCTCCAAGCACTGCCTGTCACCCGG GGGAAAGCATACCCAGCCTCCAAGCACTGCCTGTCACCCGG < 41bp 1 0.287977297825538 1 0.375829219818115 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53685807 chr12:53685797 nonsynonymous SNV 0.998 0 11 hm5C_associated_SNPs_22197 0 0 0 0 2 ESPL1 chr12:53685872 5'GT 53685872 Upstream 76bp
chr20 42695425 42695425 1 + C T ESCA 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCTATCCAA < 41bp 1 0.424748541022886 1 0.110459685325623 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695425 nonsynonymous SNV 0.918 1 35 hm5C_associated_SNPs_22198 0 0 0 0 2 TOX2 chr20:42695370 3'AG 42695370 Downstream 56bp
chr20 42695425 42695425 1 + C T ESCA 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCTATCCAA < 41bp 1 0.424748541022886 1 0.110459685325623 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695425 nonsynonymous SNV 0.918 1 35 hm5C_associated_SNPs_22198 0 0 0 0 2 TOX2 chr20:42695497 5'GT 42695497 Upstream 73bp
chr15 36984338 36984338 1 + C T ESCA 36984350 + 36984330 36984370 41 ATTGTGAACGACTGCTGTTACGGACCACTAGTGGACTGCAT ATTGTGAATGACTGCTGTTACGGACCACTAGTGGACTGCAT < 41bp 1 0.49434958891814 1 0.815479755401611 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36984350 chr15:36984338 synonymous SNV . 0 9 hm5C_associated_SNPs_22199 0 0 0 0 2 C15orf41 chr15:36984327 3'AG 36984327 Downstream 12bp
chr15 36984338 36984338 1 + C T ESCA 36984350 + 36984330 36984370 41 ATTGTGAACGACTGCTGTTACGGACCACTAGTGGACTGCAT ATTGTGAATGACTGCTGTTACGGACCACTAGTGGACTGCAT < 41bp 1 0.49434958891814 1 0.815479755401611 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36984350 chr15:36984338 synonymous SNV . 0 9 hm5C_associated_SNPs_22199 0 0 0 0 2 C15orf41 chr15:36984376 5'GT 36984376 Upstream 39bp
chr21 33040846 33040846 1 + C T ESCA 33040833 + 33040813 33040853 41 AGGTGGAAATGAAGAAAGTACAAAGACAGGAAACGCTGGAA AGGTGGAAATGAAGAAAGTACAAAGACAGGAAATGCTGGAA < 41bp 1 0.647242788169217 1 0.345230102539062 experiment 0.705514423661566 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SOD1 ENSG00000142168 CDS Human protein_coding chr21:33040833 chr21:33040846 synonymous SNV . 0 34 hm5C_associated_SNPs_22200 0 0 1 0 1 SOD1 chr21:33040784 3'AG 33040784 Downstream 63bp
chr8 22862121 22862121 1 + A G ESCA 22862102 + 22862082 22862122 41 GCTGGCCACGCATGTGCCCACAGTATGGGCCATCGACCAAT GCTGGCCACGCATGTGCCCACAGTATGGGCCATCGACCAGT < 41bp 1 0.670148012971052 1 0.170883327722549 experiment 0.659703974057896 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22862102 chr8:22862121 synonymous SNV . 0 40 hm5C_associated_SNPs_22201 0 0 0 0 1 RHOBTB2 chr8:22862139 5'GT 22862139 Upstream 19bp
chr5 86669996 86669996 1 + T C ESCA 86670013 + 86669993 86670033 41 TTTTACATATTGAAGAAGCCCATAAACTCCCAGTAAAACAT TTTCACATATTGAAGAAGCCCATAAACTCCCAGTAAAACAT < 41bp 1 0.203766806602451 1 0.256947875022888 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RASA1 ENSG00000145715 CDS Human protein_coding chr5:86670013 chr5:86669996 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_22202 0 0 0 2 1 RASA1 chr5:86669980 3'AG 86669980 Downstream 17bp
chr19 49964929 49964929 1 + G A ESCA 49964910 + 49964890 49964930 41 GCCCTCGTGCCCCCGGCCTCCCCGGCGCCCCTCCTCCTGGC GCCCTCGTGCCCCCGGCCTCCCCGGCGCCCCTCCTCCTGAC < 41bp 1 0.708711848019391 1 0.53389310836792 experiment 0.582576303961217 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49964910 chr19:49964929 nonsynonymous SNV 0.888 4 40 hm5C_associated_SNPs_22204 0 0 1 0 1 ALDH16A1 chr19:49964876 3'AG 49964876 Downstream 54bp
chr2 46608780 46608780 1 + G A ESCA 46608795 + 46608775 46608815 41 AGTCCGGCCATGGTAGCCCTCTCCAACAAGCTGAAGCTGAA AGTCCAGCCATGGTAGCCCTCTCCAACAAGCTGAAGCTGAA < 41bp 1 0.712410523206036 1 0.984783411026001 experiment 0.575178953587928 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46608795 chr2:46608780 synonymous SNV . 0 6 hm5C_associated_SNPs_22206 0 0 1 0 2 EPAS1 chr2:46608735 3'AG 46608735 Downstream 46bp
chr2 46608780 46608780 1 + G A ESCA 46608795 + 46608775 46608815 41 AGTCCGGCCATGGTAGCCCTCTCCAACAAGCTGAAGCTGAA AGTCCAGCCATGGTAGCCCTCTCCAACAAGCTGAAGCTGAA < 41bp 1 0.712410523206036 1 0.984783411026001 experiment 0.575178953587928 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46608795 chr2:46608780 synonymous SNV . 0 6 hm5C_associated_SNPs_22206 0 0 1 0 2 EPAS1 chr2:46608861 5'GT 46608861 Upstream 82bp
chr14 61275047 61275047 1 + C T ESCA 61275055 + 61275035 61275075 41 TAATGCAGTTTTCAACTTGACCAACAATGTGGATTTGGACA TAATGCAGTTTTTAACTTGACCAACAATGTGGATTTGGACA < 41bp 1 0.0614132731357404 1 0.0540232360363007 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61275055 chr14:61275047 synonymous SNV . 0 13 hm5C_associated_SNPs_22207 0 0 1 0 2 MNAT1 chr14:61275043 3'AG 61275043 Downstream 5bp
chr14 61275047 61275047 1 + C T ESCA 61275055 + 61275035 61275075 41 TAATGCAGTTTTCAACTTGACCAACAATGTGGATTTGGACA TAATGCAGTTTTTAACTTGACCAACAATGTGGATTTGGACA < 41bp 1 0.0614132731357404 1 0.0540232360363007 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61275055 chr14:61275047 synonymous SNV . 0 13 hm5C_associated_SNPs_22207 0 0 1 0 2 MNAT1 chr14:61275146 5'GT 61275146 Upstream 100bp
chr14 61275047 61275047 1 + C T ESCA 61275056 + 61275036 61275076 41 AATGCAGTTTTCAACTTGACCAACAATGTGGATTTGGACAA AATGCAGTTTTTAACTTGACCAACAATGTGGATTTGGACAA < 41bp 1 0.707741175370179 1 0.322123140096664 experiment 0.584517649259643 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61275056 chr14:61275047 synonymous SNV . 0 12 hm5C_associated_SNPs_22208 0 0 1 0 2 MNAT1 chr14:61275043 3'AG 61275043 Downstream 5bp
chr14 61275047 61275047 1 + C T ESCA 61275056 + 61275036 61275076 41 AATGCAGTTTTCAACTTGACCAACAATGTGGATTTGGACAA AATGCAGTTTTTAACTTGACCAACAATGTGGATTTGGACAA < 41bp 1 0.707741175370179 1 0.322123140096664 experiment 0.584517649259643 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61275056 chr14:61275047 synonymous SNV . 0 12 hm5C_associated_SNPs_22208 0 0 1 0 2 MNAT1 chr14:61275146 5'GT 61275146 Upstream 100bp
chr6 30312963 30312963 1 + G A ESCA 30312944 + 30312924 30312964 41 CGGGAGGCCCTGGAGCGCGGCGGTGATGGCGGGGCCGGTGA CGGGAGGCCCTGGAGCGCGGCGGTGATGGCGGGGCCGGTAA < 41bp 1 0.553666201961373 1 0.523993194103241 experiment 0.892667596077255 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPP21 ENSG00000241370 CDS Human protein_coding chr6:30312944 chr6:30312963 synonymous SNV . 0 40 hm5C_associated_SNPs_22212 0 0 1 0 1 RPP21 chr6:30313005 5'GT 30313005 Upstream 43bp
chr19 42793154 42793154 1 + C T ESCA 42793148 + 42793128 42793168 41 GCTACACACAGTTGGGGGACCTGGCTCAGCCCGGCCCCGAG GCTACACACAGTTGGGGGACCTGGCTTAGCCCGGCCCCGAG < 41bp 1 0.683246763500597 1 0.847815215587616 experiment 0.633506472998806 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42793148 chr19:42793154 nonsynonymous SNV 0.998 2 27 hm5C_associated_SNPs_22213 0 0 1 0 1 CIC chr19:42793242 5'GT 42793242 Upstream 89bp
chr19 42793154 42793154 1 + C T ESCA 42793173 + 42793153 42793193 41 TCAGCCCGGCCCCGAGCTTTCTCCCACAGCGGGGTACACAG TTAGCCCGGCCCCGAGCTTTCTCCCACAGCGGGGTACACAG < 41bp 1 0.487692445284336 1 0.233020633459091 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42793173 chr19:42793154 nonsynonymous SNV 0.998 2 2 hm5C_associated_SNPs_22214 0 0 1 0 1 CIC chr19:42793242 5'GT 42793242 Upstream 89bp
chr1 230379135 230379135 1 + G C ESCA 230379152 + 230379132 230379172 41 AATGAGCACTGGCTGGAGCCCCTCCTGGAAAGGGTGGCGGA AATCAGCACTGGCTGGAGCCCCTCCTGGAAAGGGTGGCGGA < 41bp 1 0.0769070817871455 1 0.109193712472916 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230379152 chr1:230379135 nonsynonymous SNV 0.996 1 4 hm5C_associated_SNPs_22215 0 0 1 0 2 GALNT2 chr1:230379052 3'AG 230379052 Downstream 84bp
chr1 230379135 230379135 1 + G C ESCA 230379152 + 230379132 230379172 41 AATGAGCACTGGCTGGAGCCCCTCCTGGAAAGGGTGGCGGA AATCAGCACTGGCTGGAGCCCCTCCTGGAAAGGGTGGCGGA < 41bp 1 0.0769070817871455 1 0.109193712472916 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230379152 chr1:230379135 nonsynonymous SNV 0.996 1 4 hm5C_associated_SNPs_22215 0 0 1 0 2 GALNT2 chr1:230379173 5'GT 230379173 Upstream 39bp
chr12 31244709 31244709 1 + C A ESCA 31244691 + 31244671 31244711 41 CAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGGGCAT CAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGGGAAT < 41bp 1 0.192997781270083 1 0.083298921585083 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244691 chr12:31244709 synonymous SNV . 0 39 hm5C_associated_SNPs_22216 0 0 1 0 2 DDX11 chr12:31244653 3'AG 31244653 Downstream 57bp
chr12 31244709 31244709 1 + C A ESCA 31244691 + 31244671 31244711 41 CAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGGGCAT CAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGGGAAT < 41bp 1 0.192997781270083 1 0.083298921585083 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244691 chr12:31244709 synonymous SNV . 0 39 hm5C_associated_SNPs_22216 0 0 1 0 2 DDX11 chr12:31244805 5'GT 31244805 Upstream 97bp
chr3 188242454 188242454 1 + G T ESCA 188242472 + 188242452 188242492 41 GGGGAATCCCGGAGGCAAGACACTTGAGGAGAGGCGCTCCA GGTGAATCCCGGAGGCAAGACACTTGAGGAGAGGCGCTCCA < 41bp 1 0.200686123813346 1 0.0292876064777374 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LPP ENSG00000145012 CDS Human protein_coding chr3:188242472 chr3:188242454 nonsynonymous SNV 0.798 0 3 hm5C_associated_SNPs_22217 0 0 1 0 1 LPP chr3:188242453 3'AG 188242453 Downstream 2bp
chr16 55523591 55523591 1 + A T ESCA 55523610 + 55523590 55523630 41 AAGGTGCCCCCTGTGTCTTCCCCTTCACTTTCCTGGGCAAC ATGGTGCCCCCTGTGTCTTCCCCTTCACTTTCCTGGGCAAC < 41bp 1 0.0459297777759881 1 0.514484405517578 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP2 ENSG00000087245 CDS Human protein_coding chr16:55523610 chr16:55523591 nonsynonymous SNV 0.996 1 2 hm5C_associated_SNPs_22219 0 0 0 0 1 MMP2 chr16:55523563 3'AG 55523563 Downstream 29bp
chr11 119045959 119045959 1 + G C ESCA 119045961 + 119045941 119045981 41 GCTGCCTCTGCGGGCTCTGCCTCTGCTCTTCAACCTGATCA GCTGCCTCTGCGGGCTCTCCCTCTGCTCTTCAACCTGATCA < 41bp 1 0.391542308176394 1 0.733453273773193 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119045961 chr11:119045959 synonymous SNV . 0 19 hm5C_associated_SNPs_22220 0 0 0 0 1 NLRX1 chr11:119045983 5'GT 119045983 Upstream 25bp
chr1 164790798 164790798 1 + A G ESCA 164790815 + 164790795 164790835 41 ATCAGCCAGACAGGAGGATACAGTGATGGACTCGCAGCCAG ATCGGCCAGACAGGAGGATACAGTGATGGACTCGCAGCCAG < 41bp 1 0.725199861822806 1 0.334543377161026 experiment 0.549600276354388 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164790815 chr1:164790798 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_22221 0 0 1 0 1 PBX1 chr1:164790774 3'AG 164790774 Downstream 25bp
chr22 31592935 31592935 1 + C G ESCA 31592933 + 31592913 31592953 41 CTGTTTCAGAGAGAAGACCCCTCCTCGTCCTCAAGGACAGA CTGTTTCAGAGAGAAGACCCCTGCTCGTCCTCAAGGACAGA < 41bp 1 0.14560189424962 1 0.0799185931682587 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF185 ENSG00000138942 CDS Human protein_coding chr22:31592933 chr22:31592935 nonsynonymous SNV 0.976 5 23 hm5C_associated_SNPs_22222 0 0 1 0 2 RNF185 chr22:31592922 3'AG 31592922 Downstream 14bp
chr22 31592935 31592935 1 + C G ESCA 31592933 + 31592913 31592953 41 CTGTTTCAGAGAGAAGACCCCTCCTCGTCCTCAAGGACAGA CTGTTTCAGAGAGAAGACCCCTGCTCGTCCTCAAGGACAGA < 41bp 1 0.14560189424962 1 0.0799185931682587 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF185 ENSG00000138942 CDS Human protein_coding chr22:31592933 chr22:31592935 nonsynonymous SNV 0.976 5 23 hm5C_associated_SNPs_22222 0 0 1 0 2 RNF185 chr22:31592976 5'GT 31592976 Upstream 42bp
chr11 61491028 61491028 1 + C T ESCA 61491024 + 61491004 61491044 41 ACCAAGAGGAGGCAGCGTAACCTGCGGACCTACAACCTGCG ACCAAGAGGAGGCAGCGTAACCTGTGGACCTACAACCTGCG < 41bp 1 0.137297101627835 1 0.0983123481273651 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61491024 chr11:61491028 nonsynonymous SNV 0.988 3 25 hm5C_associated_SNPs_22224 0 0 0 0 1 DAGLA chr11:61491044 5'GT 61491044 Upstream 17bp
chr1 214794199 214794199 1 + T G ESCA 214794185 + 214794165 214794205 41 TGGGGAACAAGAGGTGACTCCAAGTCGATCAACTTTGCAAA TGGGGAACAAGAGGTGACTCCAAGTCGATCAACTGTGCAAA < 41bp 1 0.307751373033303 1 0.269824922084808 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214794185 chr1:214794199 nonsynonymous SNV 0.050 0 35 hm5C_associated_SNPs_22225 0 0 1 0 1 CENPF chr1:214794289 5'GT 214794289 Upstream 91bp
chr1 214794199 214794199 1 + T G ESCA 214794190 + 214794170 214794210 41 AACAAGAGGTGACTCCAAGTCGATCAACTTTGCAAATAGGG AACAAGAGGTGACTCCAAGTCGATCAACTGTGCAAATAGGG < 41bp 1 0.0917175114371709 1 0.331129282712936 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214794190 chr1:214794199 nonsynonymous SNV 0.050 0 30 hm5C_associated_SNPs_22226 0 0 1 0 1 CENPF chr1:214794289 5'GT 214794289 Upstream 91bp
chr17 36920394 36920394 1 + A T ESCA 36920409 + 36920389 36920429 41 CCACCAGGACACTGAAGGCCCGAATGGACTAACCCTGTTCC CCACCTGGACACTGAAGGCCCGAATGGACTAACCCTGTTCC < 41bp 1 0.411668648169754 1 0.322823584079742 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PSMB3 ENSG00000108294 CDS Human other chr17:36920409 chr17:36920394 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_22228 0 0 1 0 1 PSMB3 chr17:36920372 3'AG 36920372 Downstream 23bp
chr5 167826550 167826550 1 + C A ESCA 167826565 + 167826545 167826585 41 AAGAGCGTGGCTTTCAGACCCTGAAGAAGTAAGTACACCCT AAGAGAGTGGCTTTCAGACCCTGAAGAAGTAAGTACACCCT < 41bp 1 0.689706833514335 1 0.243661314249039 experiment 0.62058633297133 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WWC1 ENSG00000113645 CDS Human protein_coding chr5:167826565 chr5:167826550 nonsynonymous SNV 0.998 1 6 hm5C_associated_SNPs_22230 0 0 1 0 2 WWC1 chr5:167826493 3'AG 167826493 Downstream 58bp
chr5 167826550 167826550 1 + C A ESCA 167826565 + 167826545 167826585 41 AAGAGCGTGGCTTTCAGACCCTGAAGAAGTAAGTACACCCT AAGAGAGTGGCTTTCAGACCCTGAAGAAGTAAGTACACCCT < 41bp 1 0.689706833514335 1 0.243661314249039 experiment 0.62058633297133 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WWC1 ENSG00000113645 CDS Human protein_coding chr5:167826565 chr5:167826550 nonsynonymous SNV 0.998 1 6 hm5C_associated_SNPs_22230 0 0 1 0 2 WWC1 chr5:167826572 5'GT 167826572 Upstream 23bp
chr10 81841630 81841630 1 + C G ESCA 81841623 + 81841603 81841643 41 GTCTTCTGGCCTCAGAGTATCCCTTATCAGAACCTTGGGCC GTCTTCTGGCCTCAGAGTATCCCTTATGAGAACCTTGGGCC < 41bp 1 0.332282959665424 1 0.0382408201694489 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM254 ENSG00000133678 CDS Human protein_coding chr10:81841623 chr10:81841630 nonsynonymous SNV 0.995 0 28 hm5C_associated_SNPs_22232 0 0 1 0 2 TMEM254 chr10:81841597 3'AG 81841597 Downstream 34bp
chr10 81841630 81841630 1 + C G ESCA 81841623 + 81841603 81841643 41 GTCTTCTGGCCTCAGAGTATCCCTTATCAGAACCTTGGGCC GTCTTCTGGCCTCAGAGTATCCCTTATGAGAACCTTGGGCC < 41bp 1 0.332282959665424 1 0.0382408201694489 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM254 ENSG00000133678 CDS Human protein_coding chr10:81841623 chr10:81841630 nonsynonymous SNV 0.995 0 28 hm5C_associated_SNPs_22232 0 0 1 0 2 TMEM254 chr10:81841700 5'GT 81841700 Upstream 71bp
chr5 173378899 173378899 1 + A G ESCA 173378893 + 173378873 173378913 41 ATGGTTCACAGCCACTTGACCCACGAAAAACTATATTTGTT ATGGTTCACAGCCACTTGACCCACGAGAAACTATATTTGTT < 41bp 1 0.161350339631109 1 0.18205800652504 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173378893 chr5:173378899 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_22233 0 0 0 0 2 CPEB4 chr5:173378827 3'AG 173378827 Downstream 73bp
chr5 173378899 173378899 1 + A G ESCA 173378893 + 173378873 173378913 41 ATGGTTCACAGCCACTTGACCCACGAAAAACTATATTTGTT ATGGTTCACAGCCACTTGACCCACGAGAAACTATATTTGTT < 41bp 1 0.161350339631109 1 0.18205800652504 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173378893 chr5:173378899 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_22233 0 0 0 0 2 CPEB4 chr5:173378941 5'GT 173378941 Upstream 43bp
chr2 74154136 74154136 1 + C T ESCA 74154149 + 74154129 74154169 41 GCCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAA GCCTGCATGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAA < 41bp 1 0.696025515297146 1 0.260513305664062 experiment 0.607948969405709 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154149 chr2:74154136 synonymous SNV . 0 8 hm5C_associated_SNPs_22234 0 0 1 0 1 DGUOK chr2:74154179 5'GT 74154179 Upstream 44bp
chr2 74154136 74154136 1 + C T ESCA 74154151 + 74154131 74154171 41 CTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAAGG CTGCATGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAAGG < 41bp 1 0.753946190982638 1 0.373765468597412 experiment 0.492107618034724 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154151 chr2:74154136 synonymous SNV . 0 6 hm5C_associated_SNPs_22235 0 0 1 0 1 DGUOK chr2:74154179 5'GT 74154179 Upstream 44bp
chr2 74154136 74154136 1 + C T ESCA 74154152 + 74154132 74154172 41 TGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAAGGC TGCATGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAAGGC < 41bp 1 0.762007967054815 1 0.607613861560822 experiment 0.47598406589037 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154152 chr2:74154136 synonymous SNV . 0 5 hm5C_associated_SNPs_22236 0 0 1 0 1 DGUOK chr2:74154179 5'GT 74154179 Upstream 44bp
chr20 49195805 49195805 1 + G T ESCA 49195806 + 49195786 49195826 41 CAGACAGCCGACCAGCTGCGCTTCTCCTACCTGGCTGTGAT CAGACAGCCGACCAGCTGCTCTTCTCCTACCTGGCTGTGAT < 41bp 1 0.132615021486289 1 0.0461380779743195 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49195806 chr20:49195805 nonsynonymous SNV 0.998 5 20 hm5C_associated_SNPs_22237 0 0 1 0 1 PTPN1 chr20:49195866 5'GT 49195866 Upstream 62bp
chr22 47072525 47072525 1 + C G ESCA 47072518 + 47072498 47072538 41 ACAAGGTCCTGTCTGTCCTCCCAGGCTCAGGCATGGGGATT ACAAGGTCCTGTCTGTCCTCCCAGGCTGAGGCATGGGGATT < 41bp 1 0.184215054559136 1 0.415474027395248 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRAMD4 ENSG00000075240 CDS Human protein_coding chr22:47072518 chr22:47072525 stopgain 0.993 0 28 hm5C_associated_SNPs_22238 0 0 0 0 2 GRAMD4 chr22:47072497 3'AG 47072497 Downstream 29bp
chr22 47072525 47072525 1 + C G ESCA 47072518 + 47072498 47072538 41 ACAAGGTCCTGTCTGTCCTCCCAGGCTCAGGCATGGGGATT ACAAGGTCCTGTCTGTCCTCCCAGGCTGAGGCATGGGGATT < 41bp 1 0.184215054559136 1 0.415474027395248 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRAMD4 ENSG00000075240 CDS Human protein_coding chr22:47072518 chr22:47072525 stopgain 0.993 0 28 hm5C_associated_SNPs_22238 0 0 0 0 2 GRAMD4 chr22:47072565 5'GT 47072565 Upstream 41bp
chr12 131488770 131488770 1 + C T ESCA 131488788 + 131488768 131488808 41 TTCCTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCA TTTCTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCA < 41bp 1 0.253299661630018 1 0.507368445396423 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488788 chr12:131488770 nonsynonymous SNV 0.001 0 3 hm5C_associated_SNPs_22239 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 72bp
chr11 65396307 65396307 1 + G C ESCA 65396293 + 65396273 65396313 41 CCTTGACTGTGGCTCAGACTCGGCCATGCTGTTCGTCCAGG CCTTGACTGTGGCTCAGACTCGGCCATGCTGTTCCTCCAGG < 41bp 1 0.614576995930354 1 0.671729505062103 experiment 0.770846008139292 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65396293 chr11:65396307 nonsynonymous SNV 0.896 0 35 hm5C_associated_SNPs_22240 0 0 1 0 1 PCNX3 chr11:65396290 3'AG 65396290 Downstream 18bp
chr12 109547654 109547654 1 + G A ESCA 109547637 + 109547617 109547657 41 TTCTTGATCTTTTTCAGAAGCGGCACCATGTACTACAGACG TTCTTGATCTTTTTCAGAAGCGGCACCATGTACTACAAACG < 41bp 1 0.56227013972678 1 0.326792150735855 experiment 0.875459720546441 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109547637 chr12:109547654 synonymous SNV . 0 38 hm5C_associated_SNPs_22241 0 0 1 0 1 UNG chr12:109547634 3'AG 109547634 Downstream 21bp
chr12 109547654 109547654 1 + G A ESCA 109547670 + 109547650 109547690 41 TACAGACGGCTCATCCCTCCCCTTTGTCAGTGTATAGAGGG TACAAACGGCTCATCCCTCCCCTTTGTCAGTGTATAGAGGG < 41bp 1 0.0403853448991574 1 0.0626024603843689 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109547670 chr12:109547654 synonymous SNV . 0 5 hm5C_associated_SNPs_22242 0 0 1 0 1 UNG chr12:109547634 3'AG 109547634 Downstream 21bp
chr3 111705797 111705797 1 + C T ESCA 111705815 + 111705795 111705835 41 TGCTTCATGCTGCAATTGCACGACCAGAGAAGGTCGTGGCT TGTTTCATGCTGCAATTGCACGACCAGAGAAGGTCGTGGCT < 41bp 1 0.541116306921714 1 0.172331631183624 experiment 0.917767386156573 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111705815 chr3:111705797 nonsynonymous SNV 0.997 0 3 hm5C_associated_SNPs_22245 0 0 1 0 1 ABHD10 chr3:111705761 3'AG 111705761 Downstream 37bp
chr20 48568670 48568670 1 + G A ESCA 48568680 + 48568660 48568700 41 CTCCATCATCGACCAGTGAGCAGAGTCCGTGCTTGCTATCT CTCCATCATCAACCAGTGAGCAGAGTCCGTGCTTGCTATCT < 41bp 1 0.63769188045972 1 0.558053612709045 experiment 0.724616239080561 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF114 ENSG00000124226 CDS Human protein_coding chr20:48568680 chr20:48568670 nonsynonymous SNV 0.475 5 11 hm5C_associated_SNPs_22246 0 0 1 1 1 RNF114 chr20:48568613 3'AG 48568613 Downstream 58bp
chr1 155032745 155032745 1 + T C ESCA 155032751 + 155032731 155032771 41 GTCCTGGTGATGCTTGGTGCCAGCTACTGGTACCGTGCCCG GTCCTGGTGATGCTCGGTGCCAGCTACTGGTACCGTGCCCG < 41bp 1 0.576613660839941 1 0.621900320053101 experiment 0.846772678320117 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155032751 chr1:155032745 synonymous SNV . 0 15 hm5C_associated_SNPs_22248 0 0 1 0 2 ADAM15 chr1:155032681 3'AG 155032681 Downstream 65bp
chr1 155032745 155032745 1 + T C ESCA 155032751 + 155032731 155032771 41 GTCCTGGTGATGCTTGGTGCCAGCTACTGGTACCGTGCCCG GTCCTGGTGATGCTCGGTGCCAGCTACTGGTACCGTGCCCG < 41bp 1 0.576613660839941 1 0.621900320053101 experiment 0.846772678320117 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155032751 chr1:155032745 synonymous SNV . 0 15 hm5C_associated_SNPs_22248 0 0 1 0 2 ADAM15 chr1:155032819 5'GT 155032819 Upstream 75bp
chr11 124502084 124502084 1 + C T ESCA 124502089 + 124502069 124502109 41 GTAGATACTCACCTGCAGCACTTGAAGTCTCCATCACAGGG GTAGATACTCACCTGTAGCACTTGAAGTCTCCATCACAGGG < 41bp 1 0.61557069857651 1 0.126835942268372 experiment 0.768858602846979 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502089 chr11:124502084 stopgain 0.970 1 16 hm5C_associated_SNPs_22251 0 0 1 12 1 TBRG1 chr11:124501989 3'AG 124501989 Downstream 96bp
chr8 56864612 56864612 1 + G A ESCA 56864624 + 56864604 56864644 41 TAATGGGGGCTATTACATCTCTCCACGAATCACTTTTCCCT TAATGGGGACTATTACATCTCTCCACGAATCACTTTTCCCT < 41bp 1 0.670144617929983 1 0.884369552135468 experiment 0.659710764140034 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56864624 chr8:56864612 nonsynonymous SNV 0.987 5 9 hm5C_associated_SNPs_22252 0 0 1 0 2 LYN chr8:56864525 3'AG 56864525 Downstream 88bp
chr8 56864612 56864612 1 + G A ESCA 56864624 + 56864604 56864644 41 TAATGGGGGCTATTACATCTCTCCACGAATCACTTTTCCCT TAATGGGGACTATTACATCTCTCCACGAATCACTTTTCCCT < 41bp 1 0.670144617929983 1 0.884369552135468 experiment 0.659710764140034 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56864624 chr8:56864612 nonsynonymous SNV 0.987 5 9 hm5C_associated_SNPs_22252 0 0 1 0 2 LYN chr8:56864674 5'GT 56864674 Upstream 63bp
chr21 38117396 38117396 1 + C A ESCA 38117415 + 38117395 38117435 41 CCGGCGAACACTGCTAGGCACAGCCTGGTGCCAAGCTACGA CAGGCGAACACTGCTAGGCACAGCCTGGTGCCAAGCTACGA < 41bp 1 0.22860253695606 1 0.136603862047195 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIM2 ENSG00000159263 CDS Human protein_coding chr21:38117415 chr21:38117396 nonsynonymous SNV 0.029 3 2 hm5C_associated_SNPs_22253 0 0 1 0 1 SIM2 chr21:38117437 5'GT 38117437 Upstream 42bp
chr6 35438036 35438036 1 + G A ESCA 35438048 + 35438028 35438068 41 TAAATAAGGCAGGAAAGTTCCCTTCCCTGCTCACACACAAC TAAATAAGACAGGAAAGTTCCCTTCCCTGCTCACACACAAC < 41bp 1 0.0203224405684487 1 0.1176997423172 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL10A ENSG00000198755 CDS Human protein_coding chr6:35438048 chr6:35438036 nonsynonymous SNV 0.992 2 9 hm5C_associated_SNPs_22254 0 0 1 0 2 RPL10A chr6:35437956 3'AG 35437956 Downstream 81bp
chr6 35438036 35438036 1 + G A ESCA 35438048 + 35438028 35438068 41 TAAATAAGGCAGGAAAGTTCCCTTCCCTGCTCACACACAAC TAAATAAGACAGGAAAGTTCCCTTCCCTGCTCACACACAAC < 41bp 1 0.0203224405684487 1 0.1176997423172 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL10A ENSG00000198755 CDS Human protein_coding chr6:35438048 chr6:35438036 nonsynonymous SNV 0.992 2 9 hm5C_associated_SNPs_22254 0 0 1 0 2 RPL10A chr6:35438128 5'GT 35438128 Upstream 93bp
chr19 36229256 36229256 1 + G A ESCA 36229257 + 36229237 36229277 41 ATGCATGGCAATGCCGCCCGCTTCATCAACCACTCCTGTGA ATGCATGGCAATGCCGCCCACTTCATCAACCACTCCTGTGA < 41bp 1 0.211272608364465 1 0.629633903503418 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36229257 chr19:36229256 nonsynonymous SNV 0.996 5 20 hm5C_associated_SNPs_22255 0 0 1 0 1 KMT2B chr19:36229183 3'AG 36229183 Downstream 74bp
chr1 150483621 150483621 1 + C T ESCA 150483635 + 150483615 150483655 41 TATTCCCGCTGCTGCCACTGCCGCAGCCACACAAACCGCCT TATTCCTGCTGCTGCCACTGCCGCAGCCACACAAACCGCCT < 41bp 1 0.609705853642638 1 0.65549099445343 experiment 0.780588292714723 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ECM1 ENSG00000143369 CDS Human protein_coding chr1:150483635 chr1:150483621 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_22256 0 0 1 0 1 ECM1 chr1:150483674 5'GT 150483674 Upstream 54bp
chr16 1545436 1545436 1 + G A ESCA 1545447 + 1545427 1545467 41 CGCAGTGTCGGCAGCAGACGCAGCCCGGCTTCATCCTGCTC CGCAGTGTCAGCAGCAGACGCAGCCCGGCTTCATCCTGCTC < 41bp 1 0.397530856451026 1 0.137066662311554 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1545447 chr16:1545436 nonsynonymous SNV 0.016 1 10 hm5C_associated_SNPs_22258 0 0 0 0 1 TELO2 chr16:1545347 3'AG 1545347 Downstream 90bp
chrX 48564745 48564745 1 + C T ESCA 48564763 + 48564743 48564783 41 GACGTGTACACCGTGGATGCCGCCTACTATGGCAACATCTC GATGTGTACACCGTGGATGCCGCCTACTATGGCAACATCTC < 41bp 1 0.30496785499508 1 0.40756493806839 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SUV39H1 ENSG00000101945 CDS Human protein_coding chrX:48564763 chrX:48564745 nonsynonymous SNV . 0 3 hm5C_associated_SNPs_22259 0 0 1 0 1 SUV39H1 chrX:48564656 3'AG 48564656 Downstream 90bp
chr5 179147423 179147423 1 + A G ESCA 179147414 + 179147394 179147434 41 TACCTCCGTAGGGATGAAGACATGGATGGAGAATGGGAGGC TACCTCCGTAGGGATGAAGACATGGATGGGGAATGGGAGGC < 41bp 1 0.593221857738931 1 0.492015987634659 experiment 0.813556284522138 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179147414 chr5:179147423 synonymous SNV . 0 30 hm5C_associated_SNPs_22274 0 0 1 0 1 CANX chr5:179147405 3'AG 179147405 Downstream 19bp
chr15 81221497 81221497 1 + G T ESCA 81221501 + 81221481 81221521 41 TTGGACCATAGCGGAAGGACCCTCCCTATAGGCCAGTAGGT TTGGACCATAGCGGAATGACCCTCCCTATAGGCCAGTAGGT < 41bp 1 0.0208800044730045 1 0.0357131063938141 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81221501 chr15:81221497 nonsynonymous SNV 0.956 4 17 hm5C_associated_SNPs_22276 0 0 1 0 1 CEMIP chr15:81221515 5'GT 81221515 Upstream 19bp
chr15 81221497 81221497 1 + G T ESCA 81221505 + 81221485 81221525 41 ACCATAGCGGAAGGACCCTCCCTATAGGCCAGTAGGTTTGC ACCATAGCGGAATGACCCTCCCTATAGGCCAGTAGGTTTGC < 41bp 1 0.0229154405166437 1 0.366643965244293 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81221505 chr15:81221497 nonsynonymous SNV 0.956 4 13 hm5C_associated_SNPs_22277 0 0 1 0 1 CEMIP chr15:81221515 5'GT 81221515 Upstream 19bp
chrX 153677073 153677073 1 + G C ESCA 153677085 + 153677065 153677105 41 CTGCGGCAGGAGTGGGAAGCCAAGCAGGAGAAGATCAAGAG CTGCGGCACGAGTGGGAAGCCAAGCAGGAGAAGATCAAGAG < 41bp 1 0.624446682325769 1 0.620571196079254 experiment 0.751106635348462 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout FAM50A ENSG00000071859 CDS Human protein_coding chrX:153677085 chrX:153677073 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_22281 0 0 1 0 1 FAM50A chrX:153677038 3'AG 153677038 Downstream 36bp
chr9 137708901 137708901 1 + T G ESCA 137708906 + 137708886 137708926 41 TACTGGTGAACCAGGTCCATCGGGGCCTCCAGGAAAAAGGG TACTGGTGAACCAGGGCCATCGGGGCCTCCAGGAAAAAGGG < 41bp 1 0.339996680614098 1 0.854381799697876 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137708906 chr9:137708901 synonymous SNV . 0 16 hm5C_associated_SNPs_22282 0 0 0 0 1 COL5A1 chr9:137708872 3'AG 137708872 Downstream 30bp
chr2 30756135 30756135 1 + G C ESCA 30756147 + 30756127 30756167 41 TCAGATTGGAGAAAATTTGCCTCAAAGCGAGTCTCAAAGGT TCAGATTGCAGAAAATTTGCCTCAAAGCGAGTCTCAAAGGT < 41bp 1 0.641279070356255 1 0.589769780635834 experiment 0.71744185928749 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LCLAT1 ENSG00000172954 CDS Human protein_coding chr2:30756147 chr2:30756135 nonsynonymous SNV 0.897 1 9 hm5C_associated_SNPs_22283 0 0 1 0 1 LCLAT1 chr2:30756180 5'GT 30756180 Upstream 46bp
chr22 32889259 32889259 1 + G A ESCA 32889253 + 32889233 32889273 41 TCCTGTGGAGGTTTTTATATCTGCGTGATTTTCGAGGTGAT TCCTGTGGAGGTTTTTATATCTGCGTAATTTTCGAGGTGAT < 41bp 1 0.587747585050685 1 0.338546276092529 experiment 0.824504829898629 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32889253 chr22:32889259 nonsynonymous SNV 0.994 4 27 hm5C_associated_SNPs_22286 0 0 1 0 1 FBXO7 chr22:32889268 5'GT 32889268 Upstream 10bp
chr20 57289051 57289051 1 + A G ESCA 57289032 + 57289012 57289052 41 AACAGCGCTGAGTGGGAGGCCGCCTGTGTGAAGGCGGGCAG AACAGCGCTGAGTGGGAGGCCGCCTGTGTGAAGGCGGGCGG < 41bp 1 0.771555655765922 1 0.717571556568146 experiment 0.456888688468156 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57289032 chr20:57289051 nonsynonymous SNV 0.467 2 40 hm5C_associated_SNPs_22287 0 0 1 0 2 NPEPL1 chr20:57288973 3'AG 57288973 Downstream 79bp
chr20 57289051 57289051 1 + A G ESCA 57289032 + 57289012 57289052 41 AACAGCGCTGAGTGGGAGGCCGCCTGTGTGAAGGCGGGCAG AACAGCGCTGAGTGGGAGGCCGCCTGTGTGAAGGCGGGCGG < 41bp 1 0.771555655765922 1 0.717571556568146 experiment 0.456888688468156 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57289032 chr20:57289051 nonsynonymous SNV 0.467 2 40 hm5C_associated_SNPs_22287 0 0 1 0 2 NPEPL1 chr20:57289149 5'GT 57289149 Upstream 99bp
chr12 73012754 73012754 1 + C T ESCA 73012771 + 73012751 73012791 41 CTGCCAGCCGAGCTCTTTATCCTCTAGATAAATTACTGGAC CTGTCAGCCGAGCTCTTTATCCTCTAGATAAATTACTGGAC < 41bp 1 0.104747645251248 1 0.281250774860382 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRHDE ENSG00000072657 CDS Human protein_coding chr12:73012771 chr12:73012754 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_22288 0 0 0 0 2 TRHDE chr12:73012671 3'AG 73012671 Downstream 84bp
chr12 73012754 73012754 1 + C T ESCA 73012771 + 73012751 73012791 41 CTGCCAGCCGAGCTCTTTATCCTCTAGATAAATTACTGGAC CTGTCAGCCGAGCTCTTTATCCTCTAGATAAATTACTGGAC < 41bp 1 0.104747645251248 1 0.281250774860382 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRHDE ENSG00000072657 CDS Human protein_coding chr12:73012771 chr12:73012754 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_22288 0 0 0 0 2 TRHDE chr12:73012818 5'GT 73012818 Upstream 65bp
chr5 169015490 169015490 1 + G A ESCA 169015481 + 169015461 169015501 41 AAGAGGCTGAAGAAGAGCGACTAAAAGCTGCACAGTATGGT AAGAGGCTGAAGAAGAGCGACTAAAAGCTACACAGTATGGT < 41bp 1 0.429038262409548 1 0.296162486076355 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169015481 chr5:169015490 nonsynonymous SNV 0.891 4 30 hm5C_associated_SNPs_22289 0 0 1 0 3 SPDL1 chr5:169015398 3'AG 169015398 Downstream 93bp
chr5 169015490 169015490 1 + G A ESCA 169015481 + 169015461 169015501 41 AAGAGGCTGAAGAAGAGCGACTAAAAGCTGCACAGTATGGT AAGAGGCTGAAGAAGAGCGACTAAAAGCTACACAGTATGGT < 41bp 1 0.429038262409548 1 0.296162486076355 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169015481 chr5:169015490 nonsynonymous SNV 0.891 4 30 hm5C_associated_SNPs_22289 0 0 1 0 3 SPDL1 chr5:169015494 5'GT 169015494 Upstream 5bp
chr5 169015490 169015490 1 + G A ESCA 169015481 + 169015461 169015501 41 AAGAGGCTGAAGAAGAGCGACTAAAAGCTGCACAGTATGGT AAGAGGCTGAAGAAGAGCGACTAAAAGCTACACAGTATGGT < 41bp 1 0.429038262409548 1 0.296162486076355 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169015481 chr5:169015490 nonsynonymous SNV 0.891 4 30 hm5C_associated_SNPs_22289 0 0 1 0 3 SPDL1 chr5:169015579 5'GT 169015579 Upstream 90bp
chr2 55191165 55191165 1 + C T ESCA 55191153 + 55191133 55191173 41 CAAGGTGAGCTTGGGCCATGCGGCCAGGTGTGCAGCCTACA CAAGGTGAGCTTGGGCCATGCGGCCAGGTGTGTAGCCTACA < 41bp 1 0.23195405758879 1 0.417245507240295 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EML6 ENSG00000214595 CDS Human protein_coding chr2:55191153 chr2:55191165 nonsynonymous SNV 0.992 1 33 hm5C_associated_SNPs_22290 0 0 0 0 1 EML6 chr2:55191122 3'AG 55191122 Downstream 44bp
chr6 74502432 74502432 1 + T G ESCA 74502417 + 74502397 74502437 41 TGCCTTATGGCTGTGGTGAACAGAACATGATAAATTTTGCT TGCCTTATGGCTGTGGTGAACAGAACATGATAAATGTTGCT < 41bp 1 0.405530259299075 1 0.521087050437927 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD109 ENSG00000156535 CDS Human protein_coding chr6:74502417 chr6:74502432 nonsynonymous SNV 0.776 4 36 hm5C_associated_SNPs_22292 0 0 0 0 2 CD109 chr6:74502349 3'AG 74502349 Downstream 84bp
chr6 74502432 74502432 1 + T G ESCA 74502417 + 74502397 74502437 41 TGCCTTATGGCTGTGGTGAACAGAACATGATAAATTTTGCT TGCCTTATGGCTGTGGTGAACAGAACATGATAAATGTTGCT < 41bp 1 0.405530259299075 1 0.521087050437927 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD109 ENSG00000156535 CDS Human protein_coding chr6:74502417 chr6:74502432 nonsynonymous SNV 0.776 4 36 hm5C_associated_SNPs_22292 0 0 0 0 2 CD109 chr6:74502525 5'GT 74502525 Upstream 94bp
chr12 52695793 52695793 1 + C G ESCA 52695783 + 52695763 52695803 41 GCCCGGCCGCTGCTGCATCACCGCCGCCCCCTACCGTGGCA GCCCGGCCGCTGCTGCATCACCGCCGCCCCGTACCGTGGCA < 41bp 1 0.43121944451665 1 0.168270140886307 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KRT86 ENSG00000170442 CDS Human protein_coding chr12:52695783 chr12:52695793 synonymous SNV . 0 31 hm5C_associated_SNPs_22294 0 0 0 0 1 KRT86 chr12:52695697 3'AG 52695697 Downstream 97bp
chr11 67787219 67787219 1 + G C ESCA 67787211 + 67787191 67787231 41 TTGCTGTGGTGCTGGGCGGGCCCCAGGAGACGGGGCAGCTG TTGCTGTGGTGCTGGGCGGGCCCCAGGACACGGGGCAGCTG < 41bp 1 0.40156865584882 1 0.308894157409668 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67787211 chr11:67787219 nonsynonymous SNV 0.997 0 29 hm5C_associated_SNPs_22295 0 0 0 0 2 ALDH3B1 chr11:67787184 3'AG 67787184 Downstream 36bp
chr11 67787219 67787219 1 + G C ESCA 67787211 + 67787191 67787231 41 TTGCTGTGGTGCTGGGCGGGCCCCAGGAGACGGGGCAGCTG TTGCTGTGGTGCTGGGCGGGCCCCAGGACACGGGGCAGCTG < 41bp 1 0.40156865584882 1 0.308894157409668 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67787211 chr11:67787219 nonsynonymous SNV 0.997 0 29 hm5C_associated_SNPs_22295 0 0 0 0 2 ALDH3B1 chr11:67787265 5'GT 67787265 Upstream 47bp
chr11 67787219 67787219 1 + G C ESCA 67787212 + 67787192 67787232 41 TGCTGTGGTGCTGGGCGGGCCCCAGGAGACGGGGCAGCTGC TGCTGTGGTGCTGGGCGGGCCCCAGGACACGGGGCAGCTGC < 41bp 1 0.22165035003508 1 0.482812225818634 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67787212 chr11:67787219 nonsynonymous SNV 0.997 0 28 hm5C_associated_SNPs_22296 0 0 0 0 2 ALDH3B1 chr11:67787184 3'AG 67787184 Downstream 36bp
chr11 67787219 67787219 1 + G C ESCA 67787212 + 67787192 67787232 41 TGCTGTGGTGCTGGGCGGGCCCCAGGAGACGGGGCAGCTGC TGCTGTGGTGCTGGGCGGGCCCCAGGACACGGGGCAGCTGC < 41bp 1 0.22165035003508 1 0.482812225818634 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67787212 chr11:67787219 nonsynonymous SNV 0.997 0 28 hm5C_associated_SNPs_22296 0 0 0 0 2 ALDH3B1 chr11:67787265 5'GT 67787265 Upstream 47bp
chr10 5955768 5955768 1 + A G ESCA 5955758 + 5955738 5955778 41 TATCTTCAGGAGAATTCCTGCACTCAGGCCACAAAAGTTAA TATCTTCAGGAGAATTCCTGCACTCAGGCCGCAAAAGTTAA < 41bp 1 0.0551108007095293 1 0.0674555897712708 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5955758 chr10:5955768 nonsynonymous SNV 0.640 0 31 hm5C_associated_SNPs_22297 0 0 1 0 1 FBXO18 chr10:5955710 3'AG 5955710 Downstream 59bp
chr9 139753531 139753531 1 + C T ESCA 139753528 + 139753508 139753548 41 TGTGGGGCGCAGGCGGGCATCGGCGGCACCAGTGGCTGGAG TGTGGGGCGCAGGCGGGCATCGGTGGCACCAGTGGCTGGAG < 41bp 1 0.775153033337564 1 0.928479611873627 experiment 0.449693933324873 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139753528 chr9:139753531 nonsynonymous SNV 0.313 2 24 hm5C_associated_SNPs_22299 0 0 1 0 2 MAMDC4 chr9:139753457 3'AG 139753457 Downstream 75bp
chr9 139753531 139753531 1 + C T ESCA 139753528 + 139753508 139753548 41 TGTGGGGCGCAGGCGGGCATCGGCGGCACCAGTGGCTGGAG TGTGGGGCGCAGGCGGGCATCGGTGGCACCAGTGGCTGGAG < 41bp 1 0.775153033337564 1 0.928479611873627 experiment 0.449693933324873 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139753528 chr9:139753531 nonsynonymous SNV 0.313 2 24 hm5C_associated_SNPs_22299 0 0 1 0 2 MAMDC4 chr9:139753584 5'GT 139753584 Upstream 54bp
chr20 57480483 57480483 1 + C T ESCA 57480488 + 57480468 57480508 41 GAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA GAGGATGAAGGAGTGTGTGCCTGCTACGAACGCTCCAACGA < 41bp 1 0.521042189273757 1 0.36413511633873 experiment 0.957915621452485 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480488 chr20:57480483 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_22312 0 0 1 2 2 GNAS chr20:57480438 3'AG 57480438 Downstream 46bp
chr20 57480483 57480483 1 + C T ESCA 57480488 + 57480468 57480508 41 GAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA GAGGATGAAGGAGTGTGTGCCTGCTACGAACGCTCCAACGA < 41bp 1 0.521042189273757 1 0.36413511633873 experiment 0.957915621452485 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480488 chr20:57480483 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_22312 0 0 1 2 2 GNAS chr20:57480535 5'GT 57480535 Upstream 53bp
chr9 137987773 137987773 1 + G A ESCA 137987790 + 137987770 137987810 41 TACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTC TACATGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTC < 41bp 1 0.259466135444897 1 0.357764422893524 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137987790 chr9:137987773 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_22314 0 0 0 0 2 OLFM1 chr9:137987710 3'AG 137987710 Downstream 64bp
chr9 137987773 137987773 1 + G A ESCA 137987790 + 137987770 137987810 41 TACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTC TACATGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTC < 41bp 1 0.259466135444897 1 0.357764422893524 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137987790 chr9:137987773 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_22314 0 0 0 0 2 OLFM1 chr9:137987865 5'GT 137987865 Upstream 93bp
chr9 137987773 137987773 1 + G A ESCA 137987791 + 137987771 137987811 41 ACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTCC ACATGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTCC < 41bp 1 0.387612874809754 1 0.67207133769989 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137987791 chr9:137987773 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_22315 0 0 0 0 2 OLFM1 chr9:137987710 3'AG 137987710 Downstream 64bp
chr9 137987773 137987773 1 + G A ESCA 137987791 + 137987771 137987811 41 ACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTCC ACATGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTCC < 41bp 1 0.387612874809754 1 0.67207133769989 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137987791 chr9:137987773 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_22315 0 0 0 0 2 OLFM1 chr9:137987865 5'GT 137987865 Upstream 93bp
chr7 74146952 74146952 1 + G T ESCA 74146969 + 74146949 74146989 41 CTCGCCTGGAGAGGATATTACTTGCAAAGGAAAGGATTCGT CTCTCCTGGAGAGGATATTACTTGCAAAGGAAAGGATTCGT < 41bp 1 0.208445483816026 1 0.0358745455741882 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2I ENSG00000077809 CDS Human other chr7:74146969 chr7:74146952 nonsynonymous SNV 0.982 3 4 hm5C_associated_SNPs_22316 0 0 0 0 1 GTF2I chr7:74147003 5'GT 74147003 Upstream 52bp
chr19 58369950 58369950 1 + G A ESCA 58369959 + 58369939 58369979 41 TTCAGGTTGTTGGTGTGGATCAAAAGATGAGGAGGCACCTT TTCAGGTTGTTAGTGTGGATCAAAAGATGAGGAGGCACCTT < 41bp 1 0.622746110130724 1 0.758945941925049 experiment 0.754507779738552 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF587 ENSG00000198466;ENSG00000268750 CDS Human other chr19:58369959 chr19:58369950 stopgain 0.042 0 12 hm5C_associated_SNPs_22317 0 0 0 0 1 ZNF587 chr19:58369944 3'AG 58369944 Downstream 7bp
chr7 130021558 130021558 1 + C G ESCA 130021539 + 130021519 130021559 41 CGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCT CGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTGT < 41bp 1 0.394476838242996 1 0.28162145614624 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021539 chr7:130021558 nonsynonymous SNV 0.067 4 40 hm5C_associated_SNPs_22318 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 88bp
chr7 130021558 130021558 1 + C G ESCA 130021539 + 130021519 130021559 41 CGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCT CGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTGT < 41bp 1 0.394476838242996 1 0.28162145614624 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021539 chr7:130021558 nonsynonymous SNV 0.067 4 40 hm5C_associated_SNPs_22318 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 23bp
chr7 130021558 130021558 1 + C G ESCA 130021540 + 130021520 130021560 41 GAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCTG GAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTGTG < 41bp 1 0.67417820329631 1 0.771281719207764 experiment 0.65164359340738 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021540 chr7:130021558 nonsynonymous SNV 0.067 4 39 hm5C_associated_SNPs_22319 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 88bp
chr7 130021558 130021558 1 + C G ESCA 130021540 + 130021520 130021560 41 GAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCTG GAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTGTG < 41bp 1 0.67417820329631 1 0.771281719207764 experiment 0.65164359340738 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021540 chr7:130021558 nonsynonymous SNV 0.067 4 39 hm5C_associated_SNPs_22319 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 23bp
chr7 130021558 130021558 1 + C G ESCA 130021544 + 130021524 130021564 41 GCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCTGGAGT GCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTGTGGAGT < 41bp 1 0.189080667790872 1 0.428538084030151 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021544 chr7:130021558 nonsynonymous SNV 0.067 4 35 hm5C_associated_SNPs_22320 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 88bp
chr7 130021558 130021558 1 + C G ESCA 130021544 + 130021524 130021564 41 GCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCTGGAGT GCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTGTGGAGT < 41bp 1 0.189080667790872 1 0.428538084030151 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021544 chr7:130021558 nonsynonymous SNV 0.067 4 35 hm5C_associated_SNPs_22320 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 23bp
chr7 130021558 130021558 1 + C G ESCA 130021548 + 130021528 130021568 41 TTCCCCAGCATCCAGGCGGTCAAGATCTTTCTGGAGTCCCA TTCCCCAGCATCCAGGCGGTCAAGATCTTTGTGGAGTCCCA < 41bp 1 0.757546444622394 1 0.405759036540985 experiment 0.484907110755213 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021548 chr7:130021558 nonsynonymous SNV 0.067 4 31 hm5C_associated_SNPs_22321 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 88bp
chr7 130021558 130021558 1 + C G ESCA 130021548 + 130021528 130021568 41 TTCCCCAGCATCCAGGCGGTCAAGATCTTTCTGGAGTCCCA TTCCCCAGCATCCAGGCGGTCAAGATCTTTGTGGAGTCCCA < 41bp 1 0.757546444622394 1 0.405759036540985 experiment 0.484907110755213 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021548 chr7:130021558 nonsynonymous SNV 0.067 4 31 hm5C_associated_SNPs_22321 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 23bp
chr7 130021558 130021558 1 + C G ESCA 130021554 + 130021534 130021574 41 AGCATCCAGGCGGTCAAGATCTTTCTGGAGTCCCACGGCAT AGCATCCAGGCGGTCAAGATCTTTGTGGAGTCCCACGGCAT < 41bp 1 0.380863753763253 1 0.0768716335296631 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021554 chr7:130021558 nonsynonymous SNV 0.067 4 25 hm5C_associated_SNPs_22322 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 88bp
chr7 130021558 130021558 1 + C G ESCA 130021554 + 130021534 130021574 41 AGCATCCAGGCGGTCAAGATCTTTCTGGAGTCCCACGGCAT AGCATCCAGGCGGTCAAGATCTTTGTGGAGTCCCACGGCAT < 41bp 1 0.380863753763253 1 0.0768716335296631 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021554 chr7:130021558 nonsynonymous SNV 0.067 4 25 hm5C_associated_SNPs_22322 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 23bp
chr7 130021558 130021558 1 + C G ESCA 130021565 + 130021545 130021585 41 GGTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGA GGTCAAGATCTTTGTGGAGTCCCACGGCATCAGCTATGAGA < 41bp 1 0.19745858505617 1 0.0826540291309357 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021565 chr7:130021558 nonsynonymous SNV 0.067 4 14 hm5C_associated_SNPs_22323 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 88bp
chr7 130021558 130021558 1 + C G ESCA 130021565 + 130021545 130021585 41 GGTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGA GGTCAAGATCTTTGTGGAGTCCCACGGCATCAGCTATGAGA < 41bp 1 0.19745858505617 1 0.0826540291309357 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021565 chr7:130021558 nonsynonymous SNV 0.067 4 14 hm5C_associated_SNPs_22323 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 23bp
chr7 130021558 130021558 1 + C G ESCA 130021566 + 130021546 130021586 41 GTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGAC GTCAAGATCTTTGTGGAGTCCCACGGCATCAGCTATGAGAC < 41bp 1 0.407990670138166 1 0.49773296713829 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021566 chr7:130021558 nonsynonymous SNV 0.067 4 13 hm5C_associated_SNPs_22324 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 88bp
chr7 130021558 130021558 1 + C G ESCA 130021566 + 130021546 130021586 41 GTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGAC GTCAAGATCTTTGTGGAGTCCCACGGCATCAGCTATGAGAC < 41bp 1 0.407990670138166 1 0.49773296713829 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021566 chr7:130021558 nonsynonymous SNV 0.067 4 13 hm5C_associated_SNPs_22324 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 23bp
chr7 130021558 130021558 1 + C G ESCA 130021567 + 130021547 130021587 41 TCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACC TCAAGATCTTTGTGGAGTCCCACGGCATCAGCTATGAGACC < 41bp 1 0.748363435855834 1 0.457686364650726 experiment 0.503273128288333 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021567 chr7:130021558 nonsynonymous SNV 0.067 4 12 hm5C_associated_SNPs_22325 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 88bp
chr7 130021558 130021558 1 + C G ESCA 130021567 + 130021547 130021587 41 TCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACC TCAAGATCTTTGTGGAGTCCCACGGCATCAGCTATGAGACC < 41bp 1 0.748363435855834 1 0.457686364650726 experiment 0.503273128288333 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021567 chr7:130021558 nonsynonymous SNV 0.067 4 12 hm5C_associated_SNPs_22325 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 23bp
chr7 130021558 130021558 1 + C G ESCA 130021569 + 130021549 130021589 41 AAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACCAT AAGATCTTTGTGGAGTCCCACGGCATCAGCTATGAGACCAT < 41bp 1 0.746708077401728 1 0.76643693447113 experiment 0.506583845196543 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021569 chr7:130021558 nonsynonymous SNV 0.067 4 10 hm5C_associated_SNPs_22326 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 88bp
chr7 130021558 130021558 1 + C G ESCA 130021569 + 130021549 130021589 41 AAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACCAT AAGATCTTTGTGGAGTCCCACGGCATCAGCTATGAGACCAT < 41bp 1 0.746708077401728 1 0.76643693447113 experiment 0.506583845196543 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021569 chr7:130021558 nonsynonymous SNV 0.067 4 10 hm5C_associated_SNPs_22326 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 23bp
chr7 130021558 130021558 1 + C G ESCA 130021572 + 130021552 130021592 41 ATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGAT ATCTTTGTGGAGTCCCACGGCATCAGCTATGAGACCATGAT < 41bp 1 0.378654837107548 1 0.454795092344284 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021572 chr7:130021558 nonsynonymous SNV 0.067 4 7 hm5C_associated_SNPs_22327 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 88bp
chr7 130021558 130021558 1 + C G ESCA 130021572 + 130021552 130021592 41 ATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGAT ATCTTTGTGGAGTCCCACGGCATCAGCTATGAGACCATGAT < 41bp 1 0.378654837107548 1 0.454795092344284 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021572 chr7:130021558 nonsynonymous SNV 0.067 4 7 hm5C_associated_SNPs_22327 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 23bp
chr7 130021558 130021558 1 + C G ESCA 130021575 + 130021555 130021595 41 TTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGA TTTGTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGA < 41bp 1 0.688084520029682 1 0.428153216838837 experiment 0.623830959940636 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021575 chr7:130021558 nonsynonymous SNV 0.067 4 4 hm5C_associated_SNPs_22328 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 88bp
chr7 130021558 130021558 1 + C G ESCA 130021575 + 130021555 130021595 41 TTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGA TTTGTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGA < 41bp 1 0.688084520029682 1 0.428153216838837 experiment 0.623830959940636 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021575 chr7:130021558 nonsynonymous SNV 0.067 4 4 hm5C_associated_SNPs_22328 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 23bp
chr7 130021558 130021558 1 + C G ESCA 130021578 + 130021558 130021598 41 CTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGAGGA GTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGAGGA < 41bp 1 0.463141724769016 1 0.158509075641632 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021578 chr7:130021558 nonsynonymous SNV 0.067 4 1 hm5C_associated_SNPs_22329 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 88bp
chr7 130021558 130021558 1 + C G ESCA 130021578 + 130021558 130021598 41 CTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGAGGA GTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGAGGA < 41bp 1 0.463141724769016 1 0.158509075641632 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021578 chr7:130021558 nonsynonymous SNV 0.067 4 1 hm5C_associated_SNPs_22329 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 23bp
chr2 217364062 217364062 1 + A T ESCA 217364052 + 217364032 217364072 41 GGGACCCGCTATGGGGCCTCCCTCCGGAAAATGGTGAAGAA GGGACCCGCTATGGGGCCTCCCTCCGGAAATTGGTGAAGAA < 41bp 1 0.110667542628645 1 0.190938293933868 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364052 chr2:217364062 nonsynonymous SNV 1.000 0 31 hm5C_associated_SNPs_22330 0 0 1 0 2 RPL37A chr2:217363993 3'AG 217363993 Downstream 70bp
chr2 217364062 217364062 1 + A T ESCA 217364052 + 217364032 217364072 41 GGGACCCGCTATGGGGCCTCCCTCCGGAAAATGGTGAAGAA GGGACCCGCTATGGGGCCTCCCTCCGGAAATTGGTGAAGAA < 41bp 1 0.110667542628645 1 0.190938293933868 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364052 chr2:217364062 nonsynonymous SNV 1.000 0 31 hm5C_associated_SNPs_22330 0 0 1 0 2 RPL37A chr2:217364121 5'GT 217364121 Upstream 60bp
chr22 32889257 32889257 1 + G C ESCA 32889253 + 32889233 32889273 41 TCCTGTGGAGGTTTTTATATCTGCGTGATTTTCGAGGTGAT TCCTGTGGAGGTTTTTATATCTGCCTGATTTTCGAGGTGAT < 41bp 1 0.289535369509558 1 0.1242555975914 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32889253 chr22:32889257 nonsynonymous SNV 0.975 4 25 hm5C_associated_SNPs_22331 0 0 1 0 1 FBXO7 chr22:32889268 5'GT 32889268 Upstream 12bp
chr1 22333434 22333434 1 + C G ESCA 22333421 + 22333401 22333441 41 CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCGTCACTCC < 41bp 1 0.09991611822045 1 0.162553995847702 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333421 chr1:22333434 synonymous SNV . 0 34 hm5C_associated_SNPs_22332 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 64bp
chr1 22333434 22333434 1 + C G ESCA 22333421 + 22333401 22333441 41 CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCGTCACTCC < 41bp 1 0.09991611822045 1 0.162553995847702 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333421 chr1:22333434 synonymous SNV . 0 34 hm5C_associated_SNPs_22332 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 74bp
chr1 22333434 22333434 1 + C G ESCA 22333422 + 22333402 22333442 41 AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCGTCACTCCC < 41bp 1 0.318675252507838 1 0.470996022224426 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333422 chr1:22333434 synonymous SNV . 0 33 hm5C_associated_SNPs_22333 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 64bp
chr1 22333434 22333434 1 + C G ESCA 22333422 + 22333402 22333442 41 AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCGTCACTCCC < 41bp 1 0.318675252507838 1 0.470996022224426 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333422 chr1:22333434 synonymous SNV . 0 33 hm5C_associated_SNPs_22333 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 74bp
chr1 22333434 22333434 1 + C G ESCA 22333425 + 22333405 22333445 41 GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC GCCCAGCTGGGAGATGCCGTCCAGCTCGCGTCACTCCCTCC < 41bp 1 0.376023081493322 1 0.217841893434525 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333425 chr1:22333434 synonymous SNV . 0 30 hm5C_associated_SNPs_22334 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 64bp
chr1 22333434 22333434 1 + C G ESCA 22333425 + 22333405 22333445 41 GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC GCCCAGCTGGGAGATGCCGTCCAGCTCGCGTCACTCCCTCC < 41bp 1 0.376023081493322 1 0.217841893434525 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333425 chr1:22333434 synonymous SNV . 0 30 hm5C_associated_SNPs_22334 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 74bp
chr1 22333434 22333434 1 + C G ESCA 22333426 + 22333406 22333446 41 CCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCC CCCAGCTGGGAGATGCCGTCCAGCTCGCGTCACTCCCTCCC < 41bp 1 0.567113866591964 1 0.541480720043182 experiment 0.865772266816073 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333426 chr1:22333434 synonymous SNV . 0 29 hm5C_associated_SNPs_22335 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 64bp
chr1 22333434 22333434 1 + C G ESCA 22333426 + 22333406 22333446 41 CCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCC CCCAGCTGGGAGATGCCGTCCAGCTCGCGTCACTCCCTCCC < 41bp 1 0.567113866591964 1 0.541480720043182 experiment 0.865772266816073 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333426 chr1:22333434 synonymous SNV . 0 29 hm5C_associated_SNPs_22335 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 74bp
chr1 22333434 22333434 1 + C G ESCA 22333429 + 22333409 22333449 41 AGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCT AGCTGGGAGATGCCGTCCAGCTCGCGTCACTCCCTCCCGCT < 41bp 1 0.719294792836726 1 0.579834222793579 experiment 0.561410414326547 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333429 chr1:22333434 synonymous SNV . 0 26 hm5C_associated_SNPs_22336 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 64bp
chr1 22333434 22333434 1 + C G ESCA 22333429 + 22333409 22333449 41 AGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCT AGCTGGGAGATGCCGTCCAGCTCGCGTCACTCCCTCCCGCT < 41bp 1 0.719294792836726 1 0.579834222793579 experiment 0.561410414326547 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333429 chr1:22333434 synonymous SNV . 0 26 hm5C_associated_SNPs_22336 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 74bp
chr1 22333434 22333434 1 + C G ESCA 22333433 + 22333413 22333453 41 GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG GGGAGATGCCGTCCAGCTCGCGTCACTCCCTCCCGCTGGTG < 41bp 1 0.570434970858376 1 0.454955607652664 experiment 0.859130058283248 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333433 chr1:22333434 synonymous SNV . 0 22 hm5C_associated_SNPs_22337 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 64bp
chr1 22333434 22333434 1 + C G ESCA 22333433 + 22333413 22333453 41 GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG GGGAGATGCCGTCCAGCTCGCGTCACTCCCTCCCGCTGGTG < 41bp 1 0.570434970858376 1 0.454955607652664 experiment 0.859130058283248 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333433 chr1:22333434 synonymous SNV . 0 22 hm5C_associated_SNPs_22337 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 74bp
chr1 22333434 22333434 1 + C G ESCA 22333436 + 22333416 22333456 41 AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA AGATGCCGTCCAGCTCGCGTCACTCCCTCCCGCTGGTGACA < 41bp 1 0.101257568311253 1 0.161202549934387 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333436 chr1:22333434 synonymous SNV . 0 19 hm5C_associated_SNPs_22338 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 64bp
chr1 22333434 22333434 1 + C G ESCA 22333436 + 22333416 22333456 41 AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA AGATGCCGTCCAGCTCGCGTCACTCCCTCCCGCTGGTGACA < 41bp 1 0.101257568311253 1 0.161202549934387 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333436 chr1:22333434 synonymous SNV . 0 19 hm5C_associated_SNPs_22338 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 74bp
chr1 22333434 22333434 1 + C G ESCA 22333438 + 22333418 22333458 41 ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC ATGCCGTCCAGCTCGCGTCACTCCCTCCCGCTGGTGACATC < 41bp 1 0.329834141583401 1 0.0847916007041931 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333438 chr1:22333434 synonymous SNV . 0 17 hm5C_associated_SNPs_22339 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 64bp
chr1 22333434 22333434 1 + C G ESCA 22333438 + 22333418 22333458 41 ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC ATGCCGTCCAGCTCGCGTCACTCCCTCCCGCTGGTGACATC < 41bp 1 0.329834141583401 1 0.0847916007041931 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333438 chr1:22333434 synonymous SNV . 0 17 hm5C_associated_SNPs_22339 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 74bp
chr1 22333434 22333434 1 + C G ESCA 22333440 + 22333420 22333460 41 GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT GCCGTCCAGCTCGCGTCACTCCCTCCCGCTGGTGACATCCT < 41bp 1 0.0983190388017366 1 0.0554751455783844 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333440 chr1:22333434 synonymous SNV . 0 15 hm5C_associated_SNPs_22340 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 64bp
chr1 22333434 22333434 1 + C G ESCA 22333440 + 22333420 22333460 41 GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT GCCGTCCAGCTCGCGTCACTCCCTCCCGCTGGTGACATCCT < 41bp 1 0.0983190388017366 1 0.0554751455783844 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333440 chr1:22333434 synonymous SNV . 0 15 hm5C_associated_SNPs_22340 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 74bp
chr1 22333434 22333434 1 + C G ESCA 22333441 + 22333421 22333461 41 CCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTT CCGTCCAGCTCGCGTCACTCCCTCCCGCTGGTGACATCCTT < 41bp 1 0.0650815671528859 1 0.0307623147964478 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333441 chr1:22333434 synonymous SNV . 0 14 hm5C_associated_SNPs_22341 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 64bp
chr1 22333434 22333434 1 + C G ESCA 22333441 + 22333421 22333461 41 CCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTT CCGTCCAGCTCGCGTCACTCCCTCCCGCTGGTGACATCCTT < 41bp 1 0.0650815671528859 1 0.0307623147964478 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333441 chr1:22333434 synonymous SNV . 0 14 hm5C_associated_SNPs_22341 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 74bp
chr1 22333434 22333434 1 + C G ESCA 22333442 + 22333422 22333462 41 CGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTC CGTCCAGCTCGCGTCACTCCCTCCCGCTGGTGACATCCTTC < 41bp 1 0.46256586238108 1 0.100387394428253 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333442 chr1:22333434 synonymous SNV . 0 13 hm5C_associated_SNPs_22342 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 64bp
chr1 22333434 22333434 1 + C G ESCA 22333442 + 22333422 22333462 41 CGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTC CGTCCAGCTCGCGTCACTCCCTCCCGCTGGTGACATCCTTC < 41bp 1 0.46256586238108 1 0.100387394428253 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333442 chr1:22333434 synonymous SNV . 0 13 hm5C_associated_SNPs_22342 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 74bp
chr1 22333434 22333434 1 + C G ESCA 22333444 + 22333424 22333464 41 TCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCC TCCAGCTCGCGTCACTCCCTCCCGCTGGTGACATCCTTCCC < 41bp 1 0.370497204973474 1 0.250780463218689 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333444 chr1:22333434 synonymous SNV . 0 11 hm5C_associated_SNPs_22343 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 64bp
chr1 22333434 22333434 1 + C G ESCA 22333444 + 22333424 22333464 41 TCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCC TCCAGCTCGCGTCACTCCCTCCCGCTGGTGACATCCTTCCC < 41bp 1 0.370497204973474 1 0.250780463218689 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333444 chr1:22333434 synonymous SNV . 0 11 hm5C_associated_SNPs_22343 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 74bp
chr1 22333434 22333434 1 + C G ESCA 22333445 + 22333425 22333465 41 CCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCA CCAGCTCGCGTCACTCCCTCCCGCTGGTGACATCCTTCCCA < 41bp 1 0.341985552565093 1 0.559699952602386 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333445 chr1:22333434 synonymous SNV . 0 10 hm5C_associated_SNPs_22344 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 64bp
chr1 22333434 22333434 1 + C G ESCA 22333445 + 22333425 22333465 41 CCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCA CCAGCTCGCGTCACTCCCTCCCGCTGGTGACATCCTTCCCA < 41bp 1 0.341985552565093 1 0.559699952602386 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333445 chr1:22333434 synonymous SNV . 0 10 hm5C_associated_SNPs_22344 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 74bp
chr1 22333434 22333434 1 + C G ESCA 22333446 + 22333426 22333466 41 CAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCAA CAGCTCGCGTCACTCCCTCCCGCTGGTGACATCCTTCCCAA < 41bp 1 0.708617106116796 1 0.839885711669922 experiment 0.582765787766407 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333446 chr1:22333434 synonymous SNV . 0 9 hm5C_associated_SNPs_22345 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 64bp
chr1 22333434 22333434 1 + C G ESCA 22333446 + 22333426 22333466 41 CAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCAA CAGCTCGCGTCACTCCCTCCCGCTGGTGACATCCTTCCCAA < 41bp 1 0.708617106116796 1 0.839885711669922 experiment 0.582765787766407 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333446 chr1:22333434 synonymous SNV . 0 9 hm5C_associated_SNPs_22345 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 74bp
chr16 67914539 67914539 1 + G A ESCA 67914550 + 67914530 67914570 41 CCCCTAGCCGCACTCGTTCCCCTGATGTCATCTCCTCAGCT CCCCTAGCCACACTCGTTCCCCTGATGTCATCTCCTCAGCT < 41bp 1 0.365124275412766 1 0.110576182603836 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914550 chr16:67914539 nonsynonymous SNV 0.747 4 10 hm5C_associated_SNPs_22348 0 0 0 0 1 EDC4 chr16:67914460 3'AG 67914460 Downstream 80bp
chr14 52417396 52417396 1 + G A ESCA 52417401 + 52417381 52417421 41 TCTATCCAGCACTCCGATGGCCAGCAACAACACCGCCAGCA TCTATCCAGCACTCCAATGGCCAGCAACAACACCGCCAGCA < 41bp 1 0.321256160576121 1 0.381422251462936 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNG2 ENSG00000186469 CDS Human protein_coding chr14:52417401 chr14:52417396 synonymous SNV . 0 16 hm5C_associated_SNPs_22349 0 0 0 0 1 GNG2 chr14:52417483 5'GT 52417483 Upstream 88bp
chr20 5958593 5958593 1 + A C ESCA 5958574 + 5958554 5958594 41 TGTTTGTGGTAACACCACGACCACCTCTGGTCTGACGGTAA TGTTTGTGGTAACACCACGACCACCTCTGGTCTGACGGTCA < 41bp 1 0.087741575992355 1 0.240261882543564 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCM8 ENSG00000125885 CDS Human protein_coding chr20:5958574 chr20:5958593 synonymous SNV . 0 40 hm5C_associated_SNPs_22352 0 0 0 0 2 MCM8 chr20:5958522 3'AG 5958522 Downstream 72bp
chr20 5958593 5958593 1 + A C ESCA 5958574 + 5958554 5958594 41 TGTTTGTGGTAACACCACGACCACCTCTGGTCTGACGGTAA TGTTTGTGGTAACACCACGACCACCTCTGGTCTGACGGTCA < 41bp 1 0.087741575992355 1 0.240261882543564 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCM8 ENSG00000125885 CDS Human protein_coding chr20:5958574 chr20:5958593 synonymous SNV . 0 40 hm5C_associated_SNPs_22352 0 0 0 0 2 MCM8 chr20:5958663 5'GT 5958663 Upstream 71bp
chr1 12061834 12061834 1 + C G ESCA 12061838 + 12061818 12061858 41 CCTCCTAGGGGGCGCTCTCGCAGAAGGCTTTCAAGTGAGGA CCTCCTAGGGGGCGCTGTCGCAGAAGGCTTTCAAGTGAGGA < 41bp 1 0.749231016835958 1 0.749988198280334 experiment 0.501537966328083 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061838 chr1:12061834 nonsynonymous SNV 0.998 3 17 hm5C_associated_SNPs_22353 0 0 1 0 2 MFN2 chr1:12061826 3'AG 12061826 Downstream 9bp
chr1 12061834 12061834 1 + C G ESCA 12061838 + 12061818 12061858 41 CCTCCTAGGGGGCGCTCTCGCAGAAGGCTTTCAAGTGAGGA CCTCCTAGGGGGCGCTGTCGCAGAAGGCTTTCAAGTGAGGA < 41bp 1 0.749231016835958 1 0.749988198280334 experiment 0.501537966328083 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061838 chr1:12061834 nonsynonymous SNV 0.998 3 17 hm5C_associated_SNPs_22353 0 0 1 0 2 MFN2 chr1:12061893 5'GT 12061893 Upstream 60bp
chr6 158870089 158870089 1 + C T ESCA 158870090 + 158870070 158870110 41 TGCCACGGCAGAATGCTGGCCCACGTCCTCTTGCACGAGTC TGCCACGGCAGAATGCTGGTCCACGTCCTCTTGCACGAGTC < 41bp 1 0.175551842505789 1 0.115646094083786 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TULP4 ENSG00000130338 CDS Human protein_coding chr6:158870090 chr6:158870089 nonsynonymous SNV 0.996 4 20 hm5C_associated_SNPs_22355 0 0 1 0 1 TULP4 chr6:158870028 3'AG 158870028 Downstream 62bp
chr11 65396125 65396125 1 + C T ESCA 65396110 + 65396090 65396130 41 CGTTTCGTGCTGACCTACATCGCGCCCTGGCAGATCACCTG CGTTTCGTGCTGACCTACATCGCGCCCTGGCAGATTACCTG < 41bp 1 0.433044810846526 1 0.640671253204346 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65396110 chr11:65396125 synonymous SNV . 0 36 hm5C_associated_SNPs_22366 0 0 1 0 2 PCNX3 chr11:65396066 3'AG 65396066 Downstream 60bp
chr11 65396125 65396125 1 + C T ESCA 65396110 + 65396090 65396130 41 CGTTTCGTGCTGACCTACATCGCGCCCTGGCAGATCACCTG CGTTTCGTGCTGACCTACATCGCGCCCTGGCAGATTACCTG < 41bp 1 0.433044810846526 1 0.640671253204346 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65396110 chr11:65396125 synonymous SNV . 0 36 hm5C_associated_SNPs_22366 0 0 1 0 2 PCNX3 chr11:65396174 5'GT 65396174 Upstream 50bp
chr19 42373777 42373777 1 + A G ESCA 42373769 + 42373749 42373789 41 TGACCCTTCCCTCCCCACAGCGGCCGCAAACTGACACCTCA TGACCCTTCCCTCCCCACAGCGGCCGCAGACTGACACCTCA < 41bp 1 0.240821123054564 1 0.515654385089874 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373769 chr19:42373777 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_22367 0 0 1 0 2 RPS19 chr19:42373769 3'AG 42373769 Downstream 9bp
chr19 42373777 42373777 1 + A G ESCA 42373769 + 42373749 42373789 41 TGACCCTTCCCTCCCCACAGCGGCCGCAAACTGACACCTCA TGACCCTTCCCTCCCCACAGCGGCCGCAGACTGACACCTCA < 41bp 1 0.240821123054564 1 0.515654385089874 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373769 chr19:42373777 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_22367 0 0 1 0 2 RPS19 chr19:42373823 5'GT 42373823 Upstream 47bp
chr19 42373777 42373777 1 + A G ESCA 42373772 + 42373752 42373792 41 CCCTTCCCTCCCCACAGCGGCCGCAAACTGACACCTCAGGG CCCTTCCCTCCCCACAGCGGCCGCAGACTGACACCTCAGGG < 41bp 1 0.272776445471914 1 0.329760789871216 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373772 chr19:42373777 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_22368 0 0 1 0 2 RPS19 chr19:42373769 3'AG 42373769 Downstream 9bp
chr19 42373777 42373777 1 + A G ESCA 42373772 + 42373752 42373792 41 CCCTTCCCTCCCCACAGCGGCCGCAAACTGACACCTCAGGG CCCTTCCCTCCCCACAGCGGCCGCAGACTGACACCTCAGGG < 41bp 1 0.272776445471914 1 0.329760789871216 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373772 chr19:42373777 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_22368 0 0 1 0 2 RPS19 chr19:42373823 5'GT 42373823 Upstream 47bp
chr19 42373777 42373777 1 + A G ESCA 42373779 + 42373759 42373799 41 CTCCCCACAGCGGCCGCAAACTGACACCTCAGGGACAAAGA CTCCCCACAGCGGCCGCAGACTGACACCTCAGGGACAAAGA < 41bp 1 0.285635627974022 1 0.288530349731445 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373779 chr19:42373777 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_22369 0 0 1 0 2 RPS19 chr19:42373769 3'AG 42373769 Downstream 9bp
chr19 42373777 42373777 1 + A G ESCA 42373779 + 42373759 42373799 41 CTCCCCACAGCGGCCGCAAACTGACACCTCAGGGACAAAGA CTCCCCACAGCGGCCGCAGACTGACACCTCAGGGACAAAGA < 41bp 1 0.285635627974022 1 0.288530349731445 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373779 chr19:42373777 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_22369 0 0 1 0 2 RPS19 chr19:42373823 5'GT 42373823 Upstream 47bp
chr19 42373777 42373777 1 + A G ESCA 42373785 + 42373765 42373805 41 ACAGCGGCCGCAAACTGACACCTCAGGGACAAAGAGATCTG ACAGCGGCCGCAGACTGACACCTCAGGGACAAAGAGATCTG < 41bp 1 0.359666391216999 1 0.138155162334442 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373785 chr19:42373777 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_22370 0 0 1 0 2 RPS19 chr19:42373769 3'AG 42373769 Downstream 9bp
chr19 42373777 42373777 1 + A G ESCA 42373785 + 42373765 42373805 41 ACAGCGGCCGCAAACTGACACCTCAGGGACAAAGAGATCTG ACAGCGGCCGCAGACTGACACCTCAGGGACAAAGAGATCTG < 41bp 1 0.359666391216999 1 0.138155162334442 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373785 chr19:42373777 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_22370 0 0 1 0 2 RPS19 chr19:42373823 5'GT 42373823 Upstream 47bp
chr19 42373777 42373777 1 + A G ESCA 42373794 + 42373774 42373814 41 GCAAACTGACACCTCAGGGACAAAGAGATCTGGACAGAATC GCAGACTGACACCTCAGGGACAAAGAGATCTGGACAGAATC < 41bp 1 0.300405187164097 1 0.30560439825058 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373794 chr19:42373777 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_22371 0 0 1 0 2 RPS19 chr19:42373769 3'AG 42373769 Downstream 9bp
chr19 42373777 42373777 1 + A G ESCA 42373794 + 42373774 42373814 41 GCAAACTGACACCTCAGGGACAAAGAGATCTGGACAGAATC GCAGACTGACACCTCAGGGACAAAGAGATCTGGACAGAATC < 41bp 1 0.300405187164097 1 0.30560439825058 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373794 chr19:42373777 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_22371 0 0 1 0 2 RPS19 chr19:42373823 5'GT 42373823 Upstream 47bp
chr17 28712032 28712032 1 + G A ESCA 28712048 + 28712028 28712068 41 GCATGGTGGCTCAGTGGTAGCAAGCTATCCTTTTGATGATT GCATAGTGGCTCAGTGGTAGCAAGCTATCCTTTTGATGATT < 41bp 1 0.416070794278813 1 0.253881633281708 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28712048 chr17:28712032 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_22372 0 0 1 0 1 CPD chr17:28712007 3'AG 28712007 Downstream 26bp
chr5 139866549 139866549 1 + C T ESCA 139866547 + 139866527 139866567 41 TGAGTTGACTTTTTAGGTGCCACGTGTGCCAACGCATACAC TGAGTTGACTTTTTAGGTGCCATGTGTGCCAACGCATACAC < 41bp 1 0.221807295679892 1 0.123194843530655 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139866547 chr5:139866549 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_22375 0 0 1 0 2 ANKHD1;ANKHD1-EIF4EBP3 chr5:139866543 3'AG 139866543 Downstream 7bp
chr5 139866549 139866549 1 + C T ESCA 139866547 + 139866527 139866567 41 TGAGTTGACTTTTTAGGTGCCACGTGTGCCAACGCATACAC TGAGTTGACTTTTTAGGTGCCATGTGTGCCAACGCATACAC < 41bp 1 0.221807295679892 1 0.123194843530655 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139866547 chr5:139866549 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_22375 0 0 1 0 2 ANKHD1;ANKHD1-EIF4EBP3 chr5:139866645 5'GT 139866645 Upstream 97bp
chr4 5733348 5733348 1 + G T ESCA 5733343 + 5733323 5733363 41 AGGTTTCTCAGCCGCACCTTCCTCCGGGTGAACGCCTTCCC AGGTTTCTCAGCCGCACCTTCCTCCTGGTGAACGCCTTCCC < 41bp 1 0.0391483449968735 1 0.0601702630519867 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EVC ENSG00000072840 CDS Human protein_coding chr4:5733343 chr4:5733348 nonsynonymous SNV 0.026 1 26 hm5C_associated_SNPs_22376 0 0 1 0 1 EVC chr4:5733384 5'GT 5733384 Upstream 37bp
chr12 105519884 105519884 1 + G T ESCA 105519876 + 105519856 105519896 41 ATTTGCACATAGTATTCGGTCAATTTTTGCAAATGTAGAAG ATTTGCACATAGTATTCGGTCAATTTTTTCAAATGTAGAAG < 41bp 1 0.148390203048411 1 0.100989192724228 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519876 chr12:105519884 nonsynonymous SNV 0.999 0 29 hm5C_associated_SNPs_22377 0 0 1 0 1 WASHC4 chr12:105519905 5'GT 105519905 Upstream 22bp
chr12 105519884 105519884 1 + G T ESCA 105519885 + 105519865 105519905 41 TAGTATTCGGTCAATTTTTGCAAATGTAGAAGCCAAACTTG TAGTATTCGGTCAATTTTTTCAAATGTAGAAGCCAAACTTG < 41bp 1 0.413908290532244 1 0.760771095752716 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519885 chr12:105519884 nonsynonymous SNV 0.999 0 20 hm5C_associated_SNPs_22378 0 0 1 0 1 WASHC4 chr12:105519905 5'GT 105519905 Upstream 22bp
chr12 105519884 105519884 1 + G T ESCA 105519898 + 105519878 105519918 41 ATTTTTGCAAATGTAGAAGCCAAACTTGGTAATGTAAATCG ATTTTTTCAAATGTAGAAGCCAAACTTGGTAATGTAAATCG < 41bp 1 0.166367082343042 1 0.0910443365573883 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519898 chr12:105519884 nonsynonymous SNV 0.999 0 7 hm5C_associated_SNPs_22379 0 0 1 0 1 WASHC4 chr12:105519905 5'GT 105519905 Upstream 22bp
chr12 105519884 105519884 1 + G T ESCA 105519902 + 105519882 105519922 41 TTGCAAATGTAGAAGCCAAACTTGGTAATGTAAATCGCATT TTTCAAATGTAGAAGCCAAACTTGGTAATGTAAATCGCATT < 41bp 1 0.490069387763752 1 0.109992235898972 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519902 chr12:105519884 nonsynonymous SNV 0.999 0 3 hm5C_associated_SNPs_22380 0 0 1 0 1 WASHC4 chr12:105519905 5'GT 105519905 Upstream 22bp
chr16 14972669 14972669 1 + G A ESCA 14972674 + 14972654 14972694 41 TGACCCAGGACAACGGCATTCTGACATTCTCAAACCTGGTA TGACCCAGGACAACGACATTCTGACATTCTCAAACCTGGTA < 41bp 1 0.273764805909908 1 0.0896047055721283 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972674 chr16:14972669 nonsynonymous SNV 0.989 4 16 hm5C_associated_SNPs_22381 0 0 0 0 2 NOMO1 chr16:14972578 3'AG 14972578 Downstream 92bp
chr16 14972669 14972669 1 + G A ESCA 14972674 + 14972654 14972694 41 TGACCCAGGACAACGGCATTCTGACATTCTCAAACCTGGTA TGACCCAGGACAACGACATTCTGACATTCTCAAACCTGGTA < 41bp 1 0.273764805909908 1 0.0896047055721283 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972674 chr16:14972669 nonsynonymous SNV 0.989 4 16 hm5C_associated_SNPs_22381 0 0 0 0 2 NOMO1 chr16:14972691 5'GT 14972691 Upstream 23bp
chr16 14972669 14972669 1 + G A ESCA 14972678 + 14972658 14972698 41 CCAGGACAACGGCATTCTGACATTCTCAAACCTGGTAACGT CCAGGACAACGACATTCTGACATTCTCAAACCTGGTAACGT < 41bp 1 0.0384811628823164 1 0.0115659832954407 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972678 chr16:14972669 nonsynonymous SNV 0.989 4 12 hm5C_associated_SNPs_22382 0 0 0 0 2 NOMO1 chr16:14972578 3'AG 14972578 Downstream 92bp
chr16 14972669 14972669 1 + G A ESCA 14972678 + 14972658 14972698 41 CCAGGACAACGGCATTCTGACATTCTCAAACCTGGTAACGT CCAGGACAACGACATTCTGACATTCTCAAACCTGGTAACGT < 41bp 1 0.0384811628823164 1 0.0115659832954407 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972678 chr16:14972669 nonsynonymous SNV 0.989 4 12 hm5C_associated_SNPs_22382 0 0 0 0 2 NOMO1 chr16:14972691 5'GT 14972691 Upstream 23bp
chr16 14972669 14972669 1 + G A ESCA 14972682 + 14972662 14972702 41 GACAACGGCATTCTGACATTCTCAAACCTGGTAACGTGTTC GACAACGACATTCTGACATTCTCAAACCTGGTAACGTGTTC < 41bp 1 0.541247213730643 1 0.840597748756409 experiment 0.917505572538715 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972682 chr16:14972669 nonsynonymous SNV 0.989 4 8 hm5C_associated_SNPs_22383 0 0 0 0 2 NOMO1 chr16:14972578 3'AG 14972578 Downstream 92bp
chr16 14972669 14972669 1 + G A ESCA 14972682 + 14972662 14972702 41 GACAACGGCATTCTGACATTCTCAAACCTGGTAACGTGTTC GACAACGACATTCTGACATTCTCAAACCTGGTAACGTGTTC < 41bp 1 0.541247213730643 1 0.840597748756409 experiment 0.917505572538715 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972682 chr16:14972669 nonsynonymous SNV 0.989 4 8 hm5C_associated_SNPs_22383 0 0 0 0 2 NOMO1 chr16:14972691 5'GT 14972691 Upstream 23bp
chr1 173454551 173454551 1 + A G ESCA 173454543 + 173454523 173454563 41 AGAGCCCACAGAAAAGTTACCTTTTCCCATCATCGATGATA AGAGCCCACAGAAAAGTTACCTTTTCCCGTCATCGATGATA < 41bp 1 0.0788600619242509 1 0.0266428291797638 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173454543 chr1:173454551 nonsynonymous SNV 0.998 2 29 hm5C_associated_SNPs_22386 0 0 1 0 2 PRDX6 chr1:173454500 3'AG 173454500 Downstream 52bp
chr1 173454551 173454551 1 + A G ESCA 173454543 + 173454523 173454563 41 AGAGCCCACAGAAAAGTTACCTTTTCCCATCATCGATGATA AGAGCCCACAGAAAAGTTACCTTTTCCCGTCATCGATGATA < 41bp 1 0.0788600619242509 1 0.0266428291797638 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173454543 chr1:173454551 nonsynonymous SNV 0.998 2 29 hm5C_associated_SNPs_22386 0 0 1 0 2 PRDX6 chr1:173454646 5'GT 173454646 Upstream 96bp
chr16 84035467 84035467 1 + G A GBM 84035478 + 84035458 84035498 41 TTCCGGCACGTCAAGGTGGACACACTGAGCCAGCCTGAGGC TTCCGGCACATCAAGGTGGACACACTGAGCCAGCCTGAGGC < 41bp 1 0.26998319934479 1 0.109562188386917 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NECAB2 ENSG00000103154 CDS Human protein_coding chr16:84035478 chr16:84035467 nonsynonymous SNV 0.765 0 10 hm5C_associated_SNPs_22387 0 0 0 0 2 NECAB2 chr16:84035430 3'AG 84035430 Downstream 38bp
chr16 84035467 84035467 1 + G A GBM 84035478 + 84035458 84035498 41 TTCCGGCACGTCAAGGTGGACACACTGAGCCAGCCTGAGGC TTCCGGCACATCAAGGTGGACACACTGAGCCAGCCTGAGGC < 41bp 1 0.26998319934479 1 0.109562188386917 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NECAB2 ENSG00000103154 CDS Human protein_coding chr16:84035478 chr16:84035467 nonsynonymous SNV 0.765 0 10 hm5C_associated_SNPs_22387 0 0 0 0 2 NECAB2 chr16:84035521 5'GT 84035521 Upstream 55bp
chr8 145151572 145151572 1 + T A GBM 145151587 + 145151567 145151607 41 TCTACTTCAACCCCTACTTTCCTGGCCAGGCCATTGCCATG TCTACATCAACCCCTACTTTCCTGGCCAGGCCATTGCCATG < 41bp 1 0.31516858157247 1 0.129632145166397 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151587 chr8:145151572 nonsynonymous SNV 0.998 4 6 hm5C_associated_SNPs_22388 0 0 1 0 2 CYC1 chr8:145151487 3'AG 145151487 Downstream 86bp
chr8 145151572 145151572 1 + T A GBM 145151587 + 145151567 145151607 41 TCTACTTCAACCCCTACTTTCCTGGCCAGGCCATTGCCATG TCTACATCAACCCCTACTTTCCTGGCCAGGCCATTGCCATG < 41bp 1 0.31516858157247 1 0.129632145166397 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151587 chr8:145151572 nonsynonymous SNV 0.998 4 6 hm5C_associated_SNPs_22388 0 0 1 0 2 CYC1 chr8:145151647 5'GT 145151647 Upstream 76bp
chr12 112910837 112910837 1 + C G GBM 112910843 + 112910823 112910863 41 AGATATAAAAACATCCTGCCCTGTAAGTATCAATATTCCGC AGATATAAAAACATGCTGCCCTGTAAGTATCAATATTCCGC < 41bp 1 0.274193535909351 1 0.0906911790370941 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112910843 chr12:112910837 nonsynonymous SNV 0.997 5 15 hm5C_associated_SNPs_22390 2 0 0 0 2 PTPN11 chr12:112910748 3'AG 112910748 Downstream 90bp
chr12 112910837 112910837 1 + C G GBM 112910843 + 112910823 112910863 41 AGATATAAAAACATCCTGCCCTGTAAGTATCAATATTCCGC AGATATAAAAACATGCTGCCCTGTAAGTATCAATATTCCGC < 41bp 1 0.274193535909351 1 0.0906911790370941 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112910843 chr12:112910837 nonsynonymous SNV 0.997 5 15 hm5C_associated_SNPs_22390 2 0 0 0 2 PTPN11 chr12:112910844 5'GT 112910844 Upstream 8bp
chr3 42242460 42242460 1 + C T GBM 42242472 + 42242452 42242492 41 CCCCGGTCCAGCTTCTACGGCAGCGACATAGGCAACGTCGT CCCCGGTCTAGCTTCTACGGCAGCGACATAGGCAACGTCGT < 41bp 1 0.359515031318188 1 0.0950988531112671 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42242472 chr3:42242460 synonymous SNV . 0 9 hm5C_associated_SNPs_22391 0 0 0 0 1 TRAK1 chr3:42242546 5'GT 42242546 Upstream 87bp
chr5 162898195 162898195 1 + C T GBM 162898209 + 162898189 162898229 41 AGTTTTCTGAAAATGGTAACCAGAAGAATTTGAGAATTCTA AGTTTTTTGAAAATGGTAACCAGAAGAATTTGAGAATTCTA < 41bp 1 0.64117359306848 1 0.745211362838745 experiment 0.71765281386304 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMMR ENSG00000072571 CDS Human protein_coding chr5:162898209 chr5:162898195 nonsynonymous SNV 0.997 1 7 hm5C_associated_SNPs_22394 0 0 0 0 1 HMMR chr5:162898191 3'AG 162898191 Downstream 5bp
chr13 24858276 24858276 1 + C T GBM 24858291 + 24858271 24858311 41 AGTTTCTTCAGATGGAGGTACTGAGCCCTCTGCCTTAGTGG AGTTTTTTCAGATGGAGGTACTGAGCCCTCTGCCTTAGTGG < 41bp 1 0.147422786356976 1 0.267778396606445 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPATA13 ENSG00000182957;ENSG00000273167 CDS Human other chr13:24858291 chr13:24858276 nonsynonymous SNV 0.972 0 6 hm5C_associated_SNPs_22396 0 0 1 0 1 SPATA13 chr13:24858273 3'AG 24858273 Downstream 4bp
chr3 39127018 39127018 1 + G A GBM 39127026 + 39127006 39127046 41 TGAATTTAGGAGGACTTTTACTCCAAGCACTCCTGGAATAT TGAATTTAGGAGAACTTTTACTCCAAGCACTCCTGGAATAT < 41bp 1 0.731470717712788 1 0.927609384059906 experiment 0.537058564574423 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39127026 chr3:39127018 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_22397 0 0 1 0 2 WDR48 chr3:39127006 3'AG 39127006 Downstream 13bp
chr3 39127018 39127018 1 + G A GBM 39127026 + 39127006 39127046 41 TGAATTTAGGAGGACTTTTACTCCAAGCACTCCTGGAATAT TGAATTTAGGAGAACTTTTACTCCAAGCACTCCTGGAATAT < 41bp 1 0.731470717712788 1 0.927609384059906 experiment 0.537058564574423 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39127026 chr3:39127018 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_22397 0 0 1 0 2 WDR48 chr3:39127101 5'GT 39127101 Upstream 84bp
chr12 117426535 117426535 1 + T C GBM 117426534 + 117426514 117426554 41 CAGTAGCCGCTGCTGGAGATCTGATGTACCTGCTCAAAGCC CAGTAGCCGCTGCTGGAGATCCGATGTACCTGCTCAAAGCC < 41bp 1 0.253350953784949 1 0.391889899969101 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117426534 chr12:117426535 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_22398 0 0 0 0 1 FBXW8 chr12:117426468 3'AG 117426468 Downstream 68bp
chr6 7594065 7594065 1 + T A GBM 7594067 + 7594047 7594087 41 ATTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGTACCAT ATTGAGGAAAATGGGCTAAACCAAAGAAGAAGAGGTACCAT < 41bp 1 0.514977913735632 1 0.394603967666626 experiment 0.970044172528736 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7594067 chr6:7594065 stopgain 0.994 1 19 hm5C_associated_SNPs_22399 0 0 1 1 2 SNRNP48 chr6:7593967 3'AG 7593967 Downstream 99bp
chr6 7594065 7594065 1 + T A GBM 7594067 + 7594047 7594087 41 ATTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGTACCAT ATTGAGGAAAATGGGCTAAACCAAAGAAGAAGAGGTACCAT < 41bp 1 0.514977913735632 1 0.394603967666626 experiment 0.970044172528736 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7594067 chr6:7594065 stopgain 0.994 1 19 hm5C_associated_SNPs_22399 0 0 1 1 2 SNRNP48 chr6:7594080 5'GT 7594080 Upstream 16bp
chr6 7594065 7594065 1 + T A GBM 7594068 + 7594048 7594088 41 TTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGTACCATA TTGAGGAAAATGGGCTAAACCAAAGAAGAAGAGGTACCATA < 41bp 1 0.621469011372945 1 0.662728905677795 experiment 0.75706197725411 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7594068 chr6:7594065 stopgain 0.994 1 18 hm5C_associated_SNPs_22400 0 0 1 1 2 SNRNP48 chr6:7593967 3'AG 7593967 Downstream 99bp
chr6 7594065 7594065 1 + T A GBM 7594068 + 7594048 7594088 41 TTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGTACCATA TTGAGGAAAATGGGCTAAACCAAAGAAGAAGAGGTACCATA < 41bp 1 0.621469011372945 1 0.662728905677795 experiment 0.75706197725411 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7594068 chr6:7594065 stopgain 0.994 1 18 hm5C_associated_SNPs_22400 0 0 1 1 2 SNRNP48 chr6:7594080 5'GT 7594080 Upstream 16bp
chr7 100200148 100200148 1 + C T GBM 100200134 + 100200114 100200154 41 CCCTCCTCACTGCCTGCGCCCTGCTGCCTTTTGCCCAGGGC CCCTCCTCACTGCCTGCGCCCTGCTGCCTTTTGCTCAGGGC < 41bp 1 0.270781605816162 1 0.154189974069595 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100200134 chr7:100200148 synonymous SNV . 0 35 hm5C_associated_SNPs_22401 0 0 1 0 1 PCOLCE chr7:100200174 5'GT 100200174 Upstream 27bp
chr19 3151776 3151776 1 + G A GBM 3151786 + 3151766 3151806 41 CTCCGCAGCCGCATGCCCACCACTGGCATCAACGAGTACTG CTCCGCAGCCACATGCCCACCACTGGCATCAACGAGTACTG < 41bp 1 0.378075046190903 1 0.0447452962398529 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNA15 ENSG00000060558 CDS Human protein_coding chr19:3151786 chr19:3151776 nonsynonymous SNV 0.980 3 11 hm5C_associated_SNPs_22402 0 0 0 0 2 GNA15 chr19:3151705 3'AG 3151705 Downstream 72bp
chr19 3151776 3151776 1 + G A GBM 3151786 + 3151766 3151806 41 CTCCGCAGCCGCATGCCCACCACTGGCATCAACGAGTACTG CTCCGCAGCCACATGCCCACCACTGGCATCAACGAGTACTG < 41bp 1 0.378075046190903 1 0.0447452962398529 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNA15 ENSG00000060558 CDS Human protein_coding chr19:3151786 chr19:3151776 nonsynonymous SNV 0.980 3 11 hm5C_associated_SNPs_22402 0 0 0 0 2 GNA15 chr19:3151833 5'GT 3151833 Upstream 58bp
chr7 142459677 142459677 1 + G A GBM 142459658 + 142459638 142459678 41 AGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAATGA AGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAATAA < 41bp 1 0.755515546914724 1 0.485622376203537 experiment 0.488968906170551 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459658 chr7:142459677 nonsynonymous SNV 0.168 5 40 hm5C_associated_SNPs_22403 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 53bp
chr7 142459677 142459677 1 + G A GBM 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCACAACATCGAAGTCCTGGAGGGGAATAAGCAGTT < 41bp 1 0.511685952429781 1 0.364190697669983 experiment 0.976628095140438 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459677 nonsynonymous SNV 0.168 5 34 hm5C_associated_SNPs_22404 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 53bp
chr7 142459677 142459677 1 + G A GBM 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG AAGTCCTGGAGGGGAATAAGCAGTTCATCAATGCAGCCAAG < 41bp 1 0.608066562989852 1 0.336292386054993 experiment 0.783866874020295 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459677 nonsynonymous SNV 0.168 5 18 hm5C_associated_SNPs_22405 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 53bp
chr7 142459677 142459677 1 + G A GBM 142459685 + 142459665 142459705 41 CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT CTGGAGGGGAATAAGCAGTTCATCAATGCAGCCAAGATCAT < 41bp 1 0.597434548327356 1 0.0553243160247803 experiment 0.805130903345288 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459685 chr7:142459677 nonsynonymous SNV 0.168 5 13 hm5C_associated_SNPs_22406 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 53bp
chr7 142459677 142459677 1 + G A GBM 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAGGGGAATAAGCAGTTCATCAATGCAGCCAAGATCATCCG < 41bp 1 0.631853112447881 1 0.210549771785736 experiment 0.736293775104239 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459677 nonsynonymous SNV 0.168 5 10 hm5C_associated_SNPs_22407 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 53bp
chr7 142459677 142459677 1 + G A GBM 142459693 + 142459673 142459713 41 GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC GAATAAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC < 41bp 1 0.528316439188403 1 0.0289740562438965 experiment 0.943367121623193 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459693 chr7:142459677 nonsynonymous SNV 0.168 5 5 hm5C_associated_SNPs_22408 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 53bp
chr7 142459677 142459677 1 + G A GBM 142459696 + 142459676 142459716 41 TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC TAAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC < 41bp 1 0.361430482268459 1 0.317424535751343 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459696 chr7:142459677 nonsynonymous SNV 0.168 5 2 hm5C_associated_SNPs_22409 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 53bp
chr3 40499435 40499435 1 + C T GBM 40499425 + 40499405 40499445 41 GGCCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAA GGCCGGGTGGCCTATGTCTCCTTTGGACCTTATGCCGGAAA < 41bp 1 0.34338788516336 1 0.0951830446720123 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL14 ENSG00000188846 CDS Human protein_coding chr3:40499425 chr3:40499435 nonsynonymous SNV 0.997 0 31 hm5C_associated_SNPs_22410 0 0 1 0 1 RPL14 chr3:40499381 3'AG 40499381 Downstream 55bp
chr12 31236915 31236915 1 + C A GBM 31236904 + 31236884 31236924 41 GTCTTCTTCCTGCGAAGGGGCTGCAGGCACCCCGAGGCCTG GTCTTCTTCCTGCGAAGGGGCTGCAGGCACCACGAGGCCTG < 41bp 1 0.716132320294317 1 0.441344380378723 experiment 0.567735359411366 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31236904 chr12:31236915 nonsynonymous SNV 0.006 0 32 hm5C_associated_SNPs_22411 0 0 1 0 1 DDX11 chr12:31236995 5'GT 31236995 Upstream 81bp
chr12 109604769 109604769 1 + C T GBM 109604784 + 109604764 109604804 41 TCACACGCTTTGGGGGGGATCGGGTCATCGAGAAGGTACAG TCACATGCTTTGGGGGGGATCGGGTCATCGAGAAGGTACAG < 41bp 1 0.538423168062154 1 0.726835191249847 experiment 0.923153663875691 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109604784 chr12:109604769 nonsynonymous SNV 0.972 3 6 hm5C_associated_SNPs_22414 0 0 1 0 1 ACACB chr12:109604798 5'GT 109604798 Upstream 30bp
chr19 14150321 14150321 1 + C T GBM 14150320 + 14150300 14150340 41 CCCCGCCTCTCTCCTCACAGCCGTTCCAACAAAACCCAGAC CCCCGCCTCTCTCCTCACAGCTGTTCCAACAAAACCCAGAC < 41bp 1 0.158439111911224 1 0.270017027854919 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IL27RA ENSG00000104998 CDS Human protein_coding chr19:14150320 chr19:14150321 nonsynonymous SNV 0.033 2 22 hm5C_associated_SNPs_22415 0 0 0 0 1 IL27RA chr19:14150320 3'AG 14150320 Downstream 2bp
chr19 11559895 11559895 1 + T C GBM 11559894 + 11559874 11559914 41 CCCTGTGTCTCTCACAGCACCTGGGGCTCATGGATTGGCCC CCCTGTGTCTCTCACAGCACCCGGGGCTCATGGATTGGCCC < 41bp 1 0.524703646265194 1 0.818843245506287 experiment 0.950592707469612 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11559894 chr19:11559895 nonsynonymous SNV 0.979 3 22 hm5C_associated_SNPs_22417 0 0 1 0 2 PRKCSH chr19:11559891 3'AG 11559891 Downstream 5bp
chr19 11559895 11559895 1 + T C GBM 11559894 + 11559874 11559914 41 CCCTGTGTCTCTCACAGCACCTGGGGCTCATGGATTGGCCC CCCTGTGTCTCTCACAGCACCCGGGGCTCATGGATTGGCCC < 41bp 1 0.524703646265194 1 0.818843245506287 experiment 0.950592707469612 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11559894 chr19:11559895 nonsynonymous SNV 0.979 3 22 hm5C_associated_SNPs_22417 0 0 1 0 2 PRKCSH chr19:11559990 5'GT 11559990 Upstream 96bp
chr1 29069013 29069013 1 + G A GBM 29069000 + 29068980 29069020 41 CTCCTATTCTTTGGGTGAAGCTGCTTGGTCTACGGGGGGTG CTCCTATTCTTTGGGTGAAGCTGCTTGGTCTACAGGGGGTG < 41bp 1 0.462592745903147 1 0.263247966766357 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29069000 chr1:29069013 synonymous SNV . 0 34 hm5C_associated_SNPs_22418 0 0 1 0 1 YTHDF2 chr1:29068915 3'AG 29068915 Downstream 99bp
chr9 130569495 130569495 1 + G T GBM 130569510 + 130569490 130569530 41 TGGCAGCTGTGTCTCCATGCCCCCCTACTTCCGCTTCCTGA TGGCATCTGTGTCTCCATGCCCCCCTACTTCCGCTTCCTGA < 41bp 1 0.0873673089599582 1 0.0568917989730835 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FPGS ENSG00000136877 CDS Human protein_coding chr9:130569510 chr9:130569495 nonsynonymous SNV 0.968 0 6 hm5C_associated_SNPs_22420 0 0 1 0 2 FPGS chr9:130569488 3'AG 130569488 Downstream 8bp
chr9 130569495 130569495 1 + G T GBM 130569510 + 130569490 130569530 41 TGGCAGCTGTGTCTCCATGCCCCCCTACTTCCGCTTCCTGA TGGCATCTGTGTCTCCATGCCCCCCTACTTCCGCTTCCTGA < 41bp 1 0.0873673089599582 1 0.0568917989730835 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FPGS ENSG00000136877 CDS Human protein_coding chr9:130569510 chr9:130569495 nonsynonymous SNV 0.968 0 6 hm5C_associated_SNPs_22420 0 0 1 0 2 FPGS chr9:130569565 5'GT 130569565 Upstream 71bp
chr22 32881138 32881138 1 + C T GBM 32881149 + 32881129 32881169 41 TCCTCTCTGCGAGGGCAGCTCCGCTACTCTCACCTGTGTGC TCCTCTCTGTGAGGGCAGCTCCGCTACTCTCACCTGTGTGC < 41bp 1 0.46377989017603 1 0.123495310544968 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32881149 chr22:32881138 synonymous SNV . 0 10 hm5C_associated_SNPs_22421 0 0 1 0 2 FBXO7 chr22:32881055 3'AG 32881055 Downstream 84bp
chr22 32881138 32881138 1 + C T GBM 32881149 + 32881129 32881169 41 TCCTCTCTGCGAGGGCAGCTCCGCTACTCTCACCTGTGTGC TCCTCTCTGTGAGGGCAGCTCCGCTACTCTCACCTGTGTGC < 41bp 1 0.46377989017603 1 0.123495310544968 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32881149 chr22:32881138 synonymous SNV . 0 10 hm5C_associated_SNPs_22421 0 0 1 0 2 FBXO7 chr22:32881196 5'GT 32881196 Upstream 59bp
chr7 100466151 100466151 1 + C T GBM 100466155 + 100466135 100466175 41 CCTCCTGCCTACCGCACGGGCTCCCTGAAGCCAAATCCAGC CCTCCTGCCTACCGCATGGGCTCCCTGAAGCCAAATCCAGC < 41bp 1 0.229651244735571 1 0.02152019739151 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100466155 chr7:100466151 nonsynonymous SNV 0.002 0 17 hm5C_associated_SNPs_22422 0 0 0 0 1 TRIP6 chr7:100466117 3'AG 100466117 Downstream 35bp
chr5 53815370 53815370 1 + G T GBM 53815367 + 53815347 53815387 41 TAGCGCTGTATCAGGGGCATCTGGCTAACTTCCCGGACATC TAGCGCTGTATCAGGGGCATCTGTCTAACTTCCCGGACATC < 41bp 1 0.107631797969547 1 0.0899492800235748 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SNX18 ENSG00000178996 CDS Human protein_coding chr5:53815367 chr5:53815370 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_22423 0 0 1 0 1 SNX18 chr5:53815403 5'GT 53815403 Upstream 34bp
chr6 74475666 74475666 1 + G A GBM 74475665 + 74475645 74475685 41 ACCATTAGGTGAAGGTAACTCGTGCTGATGGCAACCAACTG ACCATTAGGTGAAGGTAACTCATGCTGATGGCAACCAACTG < 41bp 1 0.245638151801101 1 0.415159374475479 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD109 ENSG00000156535 CDS Human protein_coding chr6:74475665 chr6:74475666 nonsynonymous SNV 0.963 0 22 hm5C_associated_SNPs_22425 0 0 0 0 1 CD109 chr6:74475653 3'AG 74475653 Downstream 14bp
chr16 56970708 56970708 1 + C T GBM 56970702 + 56970682 56970722 41 GGAAGTTCTTCGGAACCTTTCTTCCCCTGGATGGGAAAACA GGAAGTTCTTCGGAACCTTTCTTCCCTTGGATGGGAAAACA < 41bp 1 0.278900664623936 1 0.32782781124115 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56970702 chr16:56970708 nonsynonymous SNV 0.969 0 27 hm5C_associated_SNPs_22426 0 0 1 0 1 HERPUD1 chr16:56970729 5'GT 56970729 Upstream 22bp
chr1 32502583 32502583 1 + C A GBM 32502589 + 32502569 32502609 41 TACCTGAACCCTCTCGTGGACGTGGGGTGCCAGTGAGAGGC TACCTGAACCCTCTAGTGGACGTGGGGTGCCAGTGAGAGGC < 41bp 1 0.769215512729897 1 0.581679940223694 experiment 0.461568974540206 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502589 chr1:32502583 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_22427 0 0 1 0 2 KHDRBS1 chr1:32502511 3'AG 32502511 Downstream 73bp
chr1 32502583 32502583 1 + C A GBM 32502589 + 32502569 32502609 41 TACCTGAACCCTCTCGTGGACGTGGGGTGCCAGTGAGAGGC TACCTGAACCCTCTAGTGGACGTGGGGTGCCAGTGAGAGGC < 41bp 1 0.769215512729897 1 0.581679940223694 experiment 0.461568974540206 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502589 chr1:32502583 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_22427 0 0 1 0 2 KHDRBS1 chr1:32502644 5'GT 32502644 Upstream 62bp
chr1 32502583 32502583 1 + C A GBM 32502598 + 32502578 32502618 41 CCTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCT CCTCTAGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCT < 41bp 1 0.613940531029756 1 0.397175878286362 experiment 0.772118937940489 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502598 chr1:32502583 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_22428 0 0 1 0 2 KHDRBS1 chr1:32502511 3'AG 32502511 Downstream 73bp
chr1 32502583 32502583 1 + C A GBM 32502598 + 32502578 32502618 41 CCTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCT CCTCTAGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCT < 41bp 1 0.613940531029756 1 0.397175878286362 experiment 0.772118937940489 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502598 chr1:32502583 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_22428 0 0 1 0 2 KHDRBS1 chr1:32502644 5'GT 32502644 Upstream 62bp
chr5 162932707 162932707 1 + G A GBM 162932723 + 162932703 162932743 41 GGGAGAAAGAGCTCTCTATACACTTTGTTCCCGGGAGCTGT GGGAAAAAGAGCTCTCTATACACTTTGTTCCCGGGAGCTGT < 41bp 1 0.475371195883393 1 0.0518599450588226 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAT2B ENSG00000038274 CDS Human protein_coding chr5:162932723 chr5:162932707 synonymous SNV . 0 5 hm5C_associated_SNPs_22430 0 0 1 0 1 MAT2B chr5:162932755 5'GT 162932755 Upstream 49bp
chr17 30692370 30692370 1 + G A GBM 30692372 + 30692352 30692392 41 TGCCCCCACCTGTTCCACGTCCTGGAATTCCTCCAATGACT TGCCCCCACCTGTTCCACATCCTGGAATTCCTCCAATGACT < 41bp 1 0.295223463831812 1 0.435990959405899 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30692372 chr17:30692370 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_22431 0 0 1 0 1 ZNF207 chr17:30692349 3'AG 30692349 Downstream 22bp
chr17 30692370 30692370 1 + G A GBM 30692381 + 30692361 30692401 41 CTGTTCCACGTCCTGGAATTCCTCCAATGACTCAAGCACAG CTGTTCCACATCCTGGAATTCCTCCAATGACTCAAGCACAG < 41bp 1 0.103715312152896 1 0.235163450241089 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30692381 chr17:30692370 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_22432 0 0 1 0 1 ZNF207 chr17:30692349 3'AG 30692349 Downstream 22bp
chr11 34129864 34129864 1 + A C GBM 34129866 + 34129846 34129886 41 TCTTTGTTGTAGTTGGGGATCGAGGAAAAGATCAGGTATGG TCTTTGTTGTAGTTGGGGCTCGAGGAAAAGATCAGGTATGG < 41bp 1 0.629734334641259 1 0.860260426998138 experiment 0.740531330717481 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129866 chr11:34129864 nonsynonymous SNV 0.820 4 19 hm5C_associated_SNPs_22433 0 0 1 0 1 NAT10 chr11:34129880 5'GT 34129880 Upstream 17bp
chr17 41477126 41477126 1 + C T GBM 41477110 + 41477090 41477130 41 CTTAGCTCACTATGGGGAACCACTTGACTGAGATGGCGCCC CTTAGCTCACTATGGGGAACCACTTGACTGAGATGGTGCCC < 41bp 1 0.362399461558241 1 0.166762977838516 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ARL4D ENSG00000175906 CDS Human protein_coding chr17:41477110 chr17:41477126 nonsynonymous SNV 0.954 1 37 hm5C_associated_SNPs_22435 0 0 0 0 1 ARL4D chr17:41477029 3'AG 41477029 Downstream 98bp
chr4 159627828 159627828 1 + G A GBM 159627823 + 159627803 159627843 41 GCCAGCCAAGGATTGCACACCTATTGAGTATCCAAAACCCG GCCAGCCAAGGATTGCACACCTATTAAGTATCCAAAACCCG < 41bp 1 0.112382038966547 1 0.0887579321861267 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ETFDH ENSG00000171503 CDS Human protein_coding chr4:159627823 chr4:159627828 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_22436 0 0 1 0 1 ETFDH chr4:159627781 3'AG 159627781 Downstream 48bp
chr19 40711067 40711067 1 + G T GBM 40711074 + 40711054 40711094 41 CGGCCAGATTTCGGTAGCATCTTGAAGCGGCTTGAAGTCAT CGGCCAGATTTCGTTAGCATCTTGAAGCGGCTTGAAGTCAT < 41bp 1 0.47329641697257 1 0.7316575050354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40711074 chr19:40711067 nonsynonymous SNV 0.880 1 14 hm5C_associated_SNPs_22437 0 0 0 0 1 MAP3K10 chr19:40711028 3'AG 40711028 Downstream 40bp
chr7 104750925 104750925 1 + G A GBM 104750943 + 104750923 104750963 41 GGGGGAGAATCACCATGTGTCTCATGTTCACCGAGTCATGT GGAGGAGAATCACCATGTGTCTCATGTTCACCGAGTCATGT < 41bp 1 0.302045996375592 1 0.0169373750686646 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2E ENSG00000005483 CDS Human protein_coding chr7:104750943 chr7:104750925 synonymous SNV . 0 3 hm5C_associated_SNPs_22438 0 0 1 0 1 KMT2E chr7:104750924 3'AG 104750924 Downstream 2bp
chr18 13056646 13056646 1 + G A GBM 13056650 + 13056630 13056670 41 TCCTGTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCAT TCCTGTGCCGTCTGTTAGTACAAACTGTGGAATTGAACCAT < 41bp 1 0.133516349502371 1 0.248621881008148 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056650 chr18:13056646 nonsynonymous SNV 0.001 0 17 hm5C_associated_SNPs_22439 0 0 1 0 1 CEP192 chr18:13056697 5'GT 13056697 Upstream 52bp
chr18 13056646 13056646 1 + G A GBM 13056654 + 13056634 13056674 41 GTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCATGGGA GTGCCGTCTGTTAGTACAAACTGTGGAATTGAACCATGGGA < 41bp 1 0.249993342135894 1 0.12364250421524 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056654 chr18:13056646 nonsynonymous SNV 0.001 0 13 hm5C_associated_SNPs_22440 0 0 1 0 1 CEP192 chr18:13056697 5'GT 13056697 Upstream 52bp
chr1 47838725 47838725 1 + C T GBM 47838724 + 47838704 47838744 41 CCTTCAAGGATGGAACAAGACCATGGATGGGAAGGCAGATG CCTTCAAGGATGGAACAAGACTATGGATGGGAAGGCAGATG < 41bp 1 0.670887813908961 1 0.0541785061359406 experiment 0.658224372182077 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CMPK1 ENSG00000162368 CDS Human protein_coding chr1:47838724 chr1:47838725 synonymous SNV . 0 22 hm5C_associated_SNPs_22441 0 0 1 2 2 CMPK1 chr1:47838627 3'AG 47838627 Downstream 99bp
chr1 47838725 47838725 1 + C T GBM 47838724 + 47838704 47838744 41 CCTTCAAGGATGGAACAAGACCATGGATGGGAAGGCAGATG CCTTCAAGGATGGAACAAGACTATGGATGGGAAGGCAGATG < 41bp 1 0.670887813908961 1 0.0541785061359406 experiment 0.658224372182077 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CMPK1 ENSG00000162368 CDS Human protein_coding chr1:47838724 chr1:47838725 synonymous SNV . 0 22 hm5C_associated_SNPs_22441 0 0 1 2 2 CMPK1 chr1:47838779 5'GT 47838779 Upstream 55bp
chr17 40651020 40651020 1 + C T GBM 40651016 + 40650996 40651036 41 ATGTCTGTTATCCTTGGTATCATCCATATGCTGTTTGGAGT ATGTCTGTTATCCTTGGTATCATCTATATGCTGTTTGGAGT < 41bp 1 0.185339091367201 1 0.130621463060379 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40651016 chr17:40651020 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_22442 0 0 1 0 2 ATP6V0A1 chr17:40650942 3'AG 40650942 Downstream 79bp
chr17 40651020 40651020 1 + C T GBM 40651016 + 40650996 40651036 41 ATGTCTGTTATCCTTGGTATCATCCATATGCTGTTTGGAGT ATGTCTGTTATCCTTGGTATCATCTATATGCTGTTTGGAGT < 41bp 1 0.185339091367201 1 0.130621463060379 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40651016 chr17:40651020 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_22442 0 0 1 0 2 ATP6V0A1 chr17:40651060 5'GT 40651060 Upstream 41bp
chr17 40651020 40651020 1 + C T GBM 40651019 + 40650999 40651039 41 TCTGTTATCCTTGGTATCATCCATATGCTGTTTGGAGTCAG TCTGTTATCCTTGGTATCATCTATATGCTGTTTGGAGTCAG < 41bp 1 0.612503060836252 1 0.63115793466568 experiment 0.774993878327496 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40651019 chr17:40651020 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_22443 0 0 1 0 2 ATP6V0A1 chr17:40650942 3'AG 40650942 Downstream 79bp
chr17 40651020 40651020 1 + C T GBM 40651019 + 40650999 40651039 41 TCTGTTATCCTTGGTATCATCCATATGCTGTTTGGAGTCAG TCTGTTATCCTTGGTATCATCTATATGCTGTTTGGAGTCAG < 41bp 1 0.612503060836252 1 0.63115793466568 experiment 0.774993878327496 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40651019 chr17:40651020 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_22443 0 0 1 0 2 ATP6V0A1 chr17:40651060 5'GT 40651060 Upstream 41bp
chr17 40651020 40651020 1 + C T GBM 40651026 + 40651006 40651046 41 TCCTTGGTATCATCCATATGCTGTTTGGAGTCAGCCTGAGT TCCTTGGTATCATCTATATGCTGTTTGGAGTCAGCCTGAGT < 41bp 1 0.154027012036562 1 0.0653258562088013 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40651026 chr17:40651020 nonsynonymous SNV 0.997 3 15 hm5C_associated_SNPs_22444 0 0 1 0 2 ATP6V0A1 chr17:40650942 3'AG 40650942 Downstream 79bp
chr17 40651020 40651020 1 + C T GBM 40651026 + 40651006 40651046 41 TCCTTGGTATCATCCATATGCTGTTTGGAGTCAGCCTGAGT TCCTTGGTATCATCTATATGCTGTTTGGAGTCAGCCTGAGT < 41bp 1 0.154027012036562 1 0.0653258562088013 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40651026 chr17:40651020 nonsynonymous SNV 0.997 3 15 hm5C_associated_SNPs_22444 0 0 1 0 2 ATP6V0A1 chr17:40651060 5'GT 40651060 Upstream 41bp
chr2 217366127 217366127 1 + G A GBM 217366129 + 217366109 217366149 41 GGAGTTGAAAGACCAGTAGACGCTCCTCTACTCTTTGAGAC GGAGTTGAAAGACCAGTAAACGCTCCTCTACTCTTTGAGAC < 41bp 1 0.520091121870764 1 0.206044852733612 experiment 0.959817756258472 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217366129 chr2:217366127 synonymous SNV . 0 19 hm5C_associated_SNPs_22445 0 0 1 1 1 RPL37A chr2:217366064 3'AG 217366064 Downstream 64bp
chr3 138329863 138329863 1 + G C GBM 138329875 + 138329855 138329895 41 TATCTCCGGACTCTGCCACTCTGAGGTTAGTGCCCTGCCCA TATCTCCGCACTCTGCCACTCTGAGGTTAGTGCCCTGCCCA < 41bp 1 0.724848708802926 1 0.848543763160706 experiment 0.550302582394147 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAIM ENSG00000158234 CDS Human protein_coding chr3:138329875 chr3:138329863 nonsynonymous SNV 0.006 0 9 hm5C_associated_SNPs_22446 0 0 1 0 1 FAIM chr3:138329879 5'GT 138329879 Upstream 17bp
chr7 66262470 66262470 1 + T C GBM 66262475 + 66262455 66262495 41 TGATGAGAAGAAAGATCTTGCCATTCAAAAGAGAATCAGGT TGATGAGAAGAAAGACCTTGCCATTCAAAAGAGAATCAGGT < 41bp 1 0.014397987543916 1 0.0852509140968323 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABGEF1 ENSG00000154710;ENSG00000243335 CDS Human other chr7:66262475 chr7:66262470 synonymous SNV . 0 16 hm5C_associated_SNPs_22447 0 0 0 0 1 RABGEF1 chr7:66262493 5'GT 66262493 Upstream 24bp
chr7 66262470 66262470 1 + T C GBM 66262476 + 66262456 66262496 41 GATGAGAAGAAAGATCTTGCCATTCAAAAGAGAATCAGGTA GATGAGAAGAAAGACCTTGCCATTCAAAAGAGAATCAGGTA < 41bp 1 0.0526250011934538 1 0.196610301733017 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABGEF1 ENSG00000154710;ENSG00000243335 CDS Human other chr7:66262476 chr7:66262470 synonymous SNV . 0 15 hm5C_associated_SNPs_22448 0 0 0 0 1 RABGEF1 chr7:66262493 5'GT 66262493 Upstream 24bp
chr1 183495733 183495733 1 + A T GBM 183495750 + 183495730 183495770 41 GTTATTACAAGAACTGTGTACAGTATTTAATGTAGATTTAC GTTTTTACAAGAACTGTGTACAGTATTTAATGTAGATTTAC < 41bp 1 0.251470363188592 1 0.0394307076931 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMG7 ENSG00000116698 CDS Human protein_coding chr1:183495750 chr1:183495733 nonsynonymous SNV 0.993 4 4 hm5C_associated_SNPs_22449 0 0 1 0 1 SMG7 chr1:183495731 3'AG 183495731 Downstream 3bp
chr19 18966740 18966740 1 + G A GBM 18966735 + 18966715 18966755 41 TGCCCCAATGGTGTTGCAGGCCGGTGCTGGTGTGTGCTCCG TGCCCCAATGGTGTTGCAGGCCGGTACTGGTGTGTGCTCCG < 41bp 1 0.254782280204397 1 0.238762766122818 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18966735 chr19:18966740 synonymous SNV . 0 26 hm5C_associated_SNPs_22450 0 0 1 0 1 UPF1 chr19:18966734 3'AG 18966734 Downstream 7bp
chr10 35495832 35495832 1 + G T GBM 35495841 + 35495821 35495861 41 AGCTGCCACTGGTGACATGCCAACTTACCAGATCCGAGCTC AGCTGCCACTGTTGACATGCCAACTTACCAGATCCGAGCTC < 41bp 1 0.704644666918269 1 0.200579732656479 experiment 0.590710666163463 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CREM ENSG00000095794 CDS Human protein_coding chr10:35495841 chr10:35495832 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_22451 0 0 0 0 1 CREM chr10:35495823 3'AG 35495823 Downstream 10bp
chr16 67572621 67572621 1 + G A GBM 67572603 + 67572583 67572623 41 CGGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCG CGGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCACG < 41bp 1 0.0677152702394382 1 0.183292269706726 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572603 chr16:67572621 nonsynonymous SNV 0.020 0 39 hm5C_associated_SNPs_22458 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 59bp
chr16 67572621 67572621 1 + G A GBM 67572603 + 67572583 67572623 41 CGGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCG CGGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCACG < 41bp 1 0.0677152702394382 1 0.183292269706726 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572603 chr16:67572621 nonsynonymous SNV 0.020 0 39 hm5C_associated_SNPs_22458 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 47bp
chr16 67572621 67572621 1 + G A GBM 67572604 + 67572584 67572624 41 GGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGC GGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCACGC < 41bp 1 0.532884209883628 1 0.383412688970566 experiment 0.934231580232745 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572604 chr16:67572621 nonsynonymous SNV 0.020 0 38 hm5C_associated_SNPs_22459 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 59bp
chr16 67572621 67572621 1 + G A GBM 67572604 + 67572584 67572624 41 GGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGC GGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCACGC < 41bp 1 0.532884209883628 1 0.383412688970566 experiment 0.934231580232745 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572604 chr16:67572621 nonsynonymous SNV 0.020 0 38 hm5C_associated_SNPs_22459 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 47bp
chr16 67572621 67572621 1 + G A GBM 67572605 + 67572585 67572625 41 GTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCT GTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCACGCT < 41bp 1 0.136267640506176 1 0.257583737373352 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572605 chr16:67572621 nonsynonymous SNV 0.020 0 37 hm5C_associated_SNPs_22460 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 59bp
chr16 67572621 67572621 1 + G A GBM 67572605 + 67572585 67572625 41 GTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCT GTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCACGCT < 41bp 1 0.136267640506176 1 0.257583737373352 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572605 chr16:67572621 nonsynonymous SNV 0.020 0 37 hm5C_associated_SNPs_22460 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 47bp
chr16 67572621 67572621 1 + G A GBM 67572606 + 67572586 67572626 41 TCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTC TCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCACGCTC < 41bp 1 0.453722351557152 1 0.331787586212158 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572606 chr16:67572621 nonsynonymous SNV 0.020 0 36 hm5C_associated_SNPs_22461 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 59bp
chr16 67572621 67572621 1 + G A GBM 67572606 + 67572586 67572626 41 TCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTC TCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCACGCTC < 41bp 1 0.453722351557152 1 0.331787586212158 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572606 chr16:67572621 nonsynonymous SNV 0.020 0 36 hm5C_associated_SNPs_22461 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 47bp
chr16 67572621 67572621 1 + G A GBM 67572607 + 67572587 67572627 41 CTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTCT CTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCACGCTCT < 41bp 1 0.767470344810608 1 0.681441366672516 experiment 0.465059310378784 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572607 chr16:67572621 nonsynonymous SNV 0.020 0 35 hm5C_associated_SNPs_22462 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 59bp
chr16 67572621 67572621 1 + G A GBM 67572607 + 67572587 67572627 41 CTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTCT CTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCACGCTCT < 41bp 1 0.767470344810608 1 0.681441366672516 experiment 0.465059310378784 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572607 chr16:67572621 nonsynonymous SNV 0.020 0 35 hm5C_associated_SNPs_22462 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 47bp
chr17 7476181 7476181 1 + C T GBM 7476180 + 7476160 7476200 41 ATGTCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCA ATGTCTGCGAGCCAGGATTCCTGGTAAGAAAGGCATTTGCA < 41bp 1 0.595918914463193 1 0.118013113737106 experiment 0.808162171073613 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7476180 chr17:7476181 stopgain 0.996 0 22 hm5C_associated_SNPs_22463 0 0 1 0 1 EIF4A1 chr17:7476182 5'GT 7476182 Upstream 2bp
chr19 2850673 2850673 1 + A G GBM 2850663 + 2850643 2850683 41 TGGATTCTGCTCAGAGGGACCTCTACAGAGATGTGATGCTG TGGATTCTGCTCAGAGGGACCTCTACAGAGGTGTGATGCTG < 41bp 1 0.518106859103414 1 0.896350383758545 experiment 0.963786281793172 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF555 ENSG00000186300 CDS Human protein_coding chr19:2850663 chr19:2850673 nonsynonymous SNV 0.973 1 31 hm5C_associated_SNPs_22464 0 0 0 0 2 ZNF555 chr19:2850585 3'AG 2850585 Downstream 89bp
chr19 2850673 2850673 1 + A G GBM 2850663 + 2850643 2850683 41 TGGATTCTGCTCAGAGGGACCTCTACAGAGATGTGATGCTG TGGATTCTGCTCAGAGGGACCTCTACAGAGGTGTGATGCTG < 41bp 1 0.518106859103414 1 0.896350383758545 experiment 0.963786281793172 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF555 ENSG00000186300 CDS Human protein_coding chr19:2850663 chr19:2850673 nonsynonymous SNV 0.973 1 31 hm5C_associated_SNPs_22464 0 0 0 0 2 ZNF555 chr19:2850711 5'GT 2850711 Upstream 39bp
chr5 53815350 53815350 1 + C T GBM 53815367 + 53815347 53815387 41 TAGCGCTGTATCAGGGGCATCTGGCTAACTTCCCGGACATC TAGTGCTGTATCAGGGGCATCTGGCTAACTTCCCGGACATC < 41bp 1 0.37080312017677 1 0.340247392654419 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SNX18 ENSG00000178996 CDS Human protein_coding chr5:53815367 chr5:53815350 nonsynonymous SNV 0.996 2 4 hm5C_associated_SNPs_22466 0 0 1 0 1 SNX18 chr5:53815403 5'GT 53815403 Upstream 54bp
chr20 18143041 18143041 1 + G A GBM 18143056 + 18143036 18143076 41 AAGGCGATGGAGTCATAGACCCAGGGATGGAGTACGTCCCA AAGGCAATGGAGTCATAGACCCAGGGATGGAGTACGTCCCA < 41bp 1 0.717013231090438 1 0.821077346801758 experiment 0.565973537819124 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control KAT14 ENSG00000149474 CDS Human protein_coding chr20:18143056 chr20:18143041 nonsynonymous SNV 0.995 1 6 hm5C_associated_SNPs_22468 0 0 0 0 1 KAT14 chr20:18143021 3'AG 18143021 Downstream 21bp
chr4 38055938 38055938 1 + G A GBM 38055933 + 38055913 38055953 41 AGTAGCCACCCCGCAGAAGGCGTGCGATTCTTCCAGCAGAT AGTAGCCACCCCGCAGAAGGCGTGCAATTCTTCCAGCAGAT < 41bp 1 0.321235516846517 1 0.489081352949142 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBC1D1 ENSG00000065882 CDS Human protein_coding chr4:38055933 chr4:38055938 nonsynonymous SNV 0.028 1 26 hm5C_associated_SNPs_22474 0 0 0 0 1 TBC1D1 chr4:38055959 5'GT 38055959 Upstream 22bp
chr1 26885383 26885383 1 + C T GBM 26885380 + 26885360 26885400 41 GCCACCGGCCTGATGGAAGACGACGGCAAGCCTCGTGCCCC GCCACCGGCCTGATGGAAGACGATGGCAAGCCTCGTGCCCC < 41bp 1 0.574701402177707 1 0.512524247169495 experiment 0.850597195644586 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26885380 chr1:26885383 synonymous SNV . 0 24 hm5C_associated_SNPs_22475 0 0 1 0 2 RPS6KA1 chr1:26885298 3'AG 26885298 Downstream 86bp
chr1 26885383 26885383 1 + C T GBM 26885380 + 26885360 26885400 41 GCCACCGGCCTGATGGAAGACGACGGCAAGCCTCGTGCCCC GCCACCGGCCTGATGGAAGACGATGGCAAGCCTCGTGCCCC < 41bp 1 0.574701402177707 1 0.512524247169495 experiment 0.850597195644586 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26885380 chr1:26885383 synonymous SNV . 0 24 hm5C_associated_SNPs_22475 0 0 1 0 2 RPS6KA1 chr1:26885428 5'GT 26885428 Upstream 46bp
chr7 129093096 129093096 1 + C T GBM 129093106 + 129093086 129093126 41 ATTCAGAGGTCGATGTGCTACACTGGTCCAGGTACAACTGC ATTCAGAGGTTGATGTGCTACACTGGTCCAGGTACAACTGC < 41bp 1 0.629622326092623 1 0.115285933017731 experiment 0.740755347814753 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129093106 chr7:129093096 synonymous SNV . 0 11 hm5C_associated_SNPs_22476 0 0 1 0 2 STRIP2 chr7:129093068 3'AG 129093068 Downstream 29bp
chr7 129093096 129093096 1 + C T GBM 129093106 + 129093086 129093126 41 ATTCAGAGGTCGATGTGCTACACTGGTCCAGGTACAACTGC ATTCAGAGGTTGATGTGCTACACTGGTCCAGGTACAACTGC < 41bp 1 0.629622326092623 1 0.115285933017731 experiment 0.740755347814753 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129093106 chr7:129093096 synonymous SNV . 0 11 hm5C_associated_SNPs_22476 0 0 1 0 2 STRIP2 chr7:129093188 5'GT 129093188 Upstream 93bp
chr11 722150 722150 1 + C T GBM 722139 + 722119 722159 41 CCAGCGCCGCGGAGCTCGTGCACTTCCTCTTCGGGCCTCTG CCAGCGCCGCGGAGCTCGTGCACTTCCTCTTTGGGCCTCTG < 41bp 1 0.125525176661353 1 0.0484163761138916 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722139 chr11:722150 synonymous SNV . 0 32 hm5C_associated_SNPs_22477 0 0 1 0 2 EPS8L2 chr11:722091 3'AG 722091 Downstream 60bp
chr11 722150 722150 1 + C T GBM 722139 + 722119 722159 41 CCAGCGCCGCGGAGCTCGTGCACTTCCTCTTCGGGCCTCTG CCAGCGCCGCGGAGCTCGTGCACTTCCTCTTTGGGCCTCTG < 41bp 1 0.125525176661353 1 0.0484163761138916 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722139 chr11:722150 synonymous SNV . 0 32 hm5C_associated_SNPs_22477 0 0 1 0 2 EPS8L2 chr11:722165 5'GT 722165 Upstream 16bp
chr11 722150 722150 1 + C T GBM 722163 + 722143 722183 41 TCCTCTTCGGGCCTCTGGACCTGGTGCCTGGGGCCGGGCGG TCCTCTTTGGGCCTCTGGACCTGGTGCCTGGGGCCGGGCGG < 41bp 1 0.769393210280233 1 0.5978182554245 experiment 0.461213579439534 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722163 chr11:722150 synonymous SNV . 0 8 hm5C_associated_SNPs_22478 0 0 1 0 2 EPS8L2 chr11:722091 3'AG 722091 Downstream 60bp
chr11 722150 722150 1 + C T GBM 722163 + 722143 722183 41 TCCTCTTCGGGCCTCTGGACCTGGTGCCTGGGGCCGGGCGG TCCTCTTTGGGCCTCTGGACCTGGTGCCTGGGGCCGGGCGG < 41bp 1 0.769393210280233 1 0.5978182554245 experiment 0.461213579439534 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722163 chr11:722150 synonymous SNV . 0 8 hm5C_associated_SNPs_22478 0 0 1 0 2 EPS8L2 chr11:722165 5'GT 722165 Upstream 16bp
chr11 2424076 2424076 1 + C T GBM 2424079 + 2424059 2424099 41 CCCTCACCCCCGTCAGGCCTCCTCCCAGCCACGGTGCAGCC CCCTCACCCCCGTCAGGTCTCCTCCCAGCCACGGTGCAGCC < 41bp 1 0.0667449141351794 1 0.0356303453445435 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSSC4 ENSG00000184281 CDS Human protein_coding chr11:2424079 chr11:2424076 synonymous SNV . 0 18 hm5C_associated_SNPs_22491 0 0 1 0 1 TSSC4 chr11:2424075 3'AG 2424075 Downstream 2bp
chr5 125820109 125820109 1 + A C GBM 125820118 + 125820098 125820138 41 CCATGCGACAGAATCCCAAACAGTTCTGAATGTCTCCAAGG CCATGCGACAGCATCCCAAACAGTTCTGAATGTCTCCAAGG < 41bp 1 0.322108428886175 1 0.108068615198135 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRAMD2B ENSG00000155324 CDS Human protein_coding chr5:125820118 chr5:125820109 nonsynonymous SNV 0.962 2 12 hm5C_associated_SNPs_22492 0 0 0 4 2 GRAMD2B chr5:125820091 3'AG 125820091 Downstream 19bp
chr5 125820109 125820109 1 + A C GBM 125820118 + 125820098 125820138 41 CCATGCGACAGAATCCCAAACAGTTCTGAATGTCTCCAAGG CCATGCGACAGCATCCCAAACAGTTCTGAATGTCTCCAAGG < 41bp 1 0.322108428886175 1 0.108068615198135 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRAMD2B ENSG00000155324 CDS Human protein_coding chr5:125820118 chr5:125820109 nonsynonymous SNV 0.962 2 12 hm5C_associated_SNPs_22492 0 0 0 4 2 GRAMD2B chr5:125820094 3'AG 125820094 Downstream 16bp
chr6 43168195 43168195 1 + G T GBM 43168200 + 43168180 43168220 41 CTGGGCCAGATCGAAGACCACAGACGAACCCACCAACCCAT CTGGGCCAGATCGAATACCACAGACGAACCCACCAACCCAT < 41bp 1 0.253239297846094 1 0.244447410106659 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CUL9 ENSG00000112659 CDS Human protein_coding chr6:43168200 chr6:43168195 nonsynonymous SNV 0.997 4 16 hm5C_associated_SNPs_22493 0 0 0 0 1 CUL9 chr6:43168174 3'AG 43168174 Downstream 22bp
chr15 93486285 93486285 1 + G A GBM 93486284 + 93486264 93486304 41 AACTTCAAGAAAAAAGAGGACGAAATCAAACAATGGTATAT AACTTCAAGAAAAAAGAGGACAAAATCAAACAATGGTATAT < 41bp 1 0.161457254264217 1 0.263472974300385 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93486284 chr15:93486285 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_22494 0 0 1 3 1 CHD2 chr15:93486298 5'GT 93486298 Upstream 14bp
chr12 57970134 57970134 1 + A C GBM 57970126 + 57970106 57970146 41 GCCCGGCTCCGGGACGAGATCAACGAGAAGCAGAAGACCAT GCCCGGCTCCGGGACGAGATCAACGAGACGCAGAAGACCAT < 41bp 1 0.636296786026059 1 0.661532461643219 experiment 0.727406427947882 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF5A ENSG00000155980 CDS Human protein_coding chr12:57970126 chr12:57970134 nonsynonymous SNV 0.989 5 29 hm5C_associated_SNPs_22496 0 0 0 0 1 KIF5A chr12:57970052 3'AG 57970052 Downstream 83bp
chr6 30545865 30545865 1 + C T GBM 30545872 + 30545852 30545892 41 GCAAAAAAAAAAGCGAGATACCCGAAAAGGCAGGCGGAAGA GCAAAAAAAAAAGTGAGATACCCGAAAAGGCAGGCGGAAGA < 41bp 1 0.445120876828568 1 0.499826908111572 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30545872 chr6:30545865 stopgain 0.998 0 14 hm5C_associated_SNPs_22497 0 0 1 0 2 ABCF1 chr6:30545850 3'AG 30545850 Downstream 16bp
chr6 30545865 30545865 1 + C T GBM 30545872 + 30545852 30545892 41 GCAAAAAAAAAAGCGAGATACCCGAAAAGGCAGGCGGAAGA GCAAAAAAAAAAGTGAGATACCCGAAAAGGCAGGCGGAAGA < 41bp 1 0.445120876828568 1 0.499826908111572 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30545872 chr6:30545865 stopgain 0.998 0 14 hm5C_associated_SNPs_22497 0 0 1 0 2 ABCF1 chr6:30545853 3'AG 30545853 Downstream 13bp
chr10 60549155 60549155 1 + C T GBM 60549151 + 60549131 60549171 41 TTTCAGTATCATTTAAACAGCGTTCCCGAATGTATGGTGCT TTTCAGTATCATTTAAACAGCGTTTCCGAATGTATGGTGCT < 41bp 1 0.0160440925323874 1 0.0241343677043915 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60549151 chr10:60549155 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_22498 0 0 1 0 1 BICC1 chr10:60549216 5'GT 60549216 Upstream 62bp
chr1 192779341 192779341 1 + C A GBM 192779358 + 192779338 192779378 41 TTCCTCTACTCCTGGGAAGCCCAAAACCGGCAAAAAAAGCA TTCATCTACTCCTGGGAAGCCCAAAACCGGCAAAAAAAGCA < 41bp 1 0.276921847809396 1 0.59360259771347 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RGS2 ENSG00000116741 CDS Human protein_coding chr1:192779358 chr1:192779341 synonymous SNV . 0 4 hm5C_associated_SNPs_22499 0 0 1 0 2 RGS2 chr1:192779296 3'AG 192779296 Downstream 46bp
chr1 192779341 192779341 1 + C A GBM 192779358 + 192779338 192779378 41 TTCCTCTACTCCTGGGAAGCCCAAAACCGGCAAAAAAAGCA TTCATCTACTCCTGGGAAGCCCAAAACCGGCAAAAAAAGCA < 41bp 1 0.276921847809396 1 0.59360259771347 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RGS2 ENSG00000116741 CDS Human protein_coding chr1:192779358 chr1:192779341 synonymous SNV . 0 4 hm5C_associated_SNPs_22499 0 0 1 0 2 RGS2 chr1:192779397 5'GT 192779397 Upstream 57bp
chr3 39104641 39104641 1 + G A GBM 39104645 + 39104625 39104665 41 CTTTTCACAGCCGGTCGAGACTCTATCATAAGAATATGGAG CTTTTCACAGCCGGTCAAGACTCTATCATAAGAATATGGAG < 41bp 1 0.613742096281343 1 0.888551235198975 experiment 0.772515807437314 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39104645 chr3:39104641 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_22500 0 0 1 0 1 WDR48 chr3:39104681 5'GT 39104681 Upstream 41bp
chr3 14487247 14487247 1 + T G GBM 14487265 + 14487245 14487285 41 TTTATTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTT TTGATTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTT < 41bp 1 0.192582280105612 1 0.382622539997101 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487265 chr3:14487247 nonsynonymous SNV 0.999 1 3 hm5C_associated_SNPs_22501 0 0 1 1 1 SLC6A6 chr3:14487225 3'AG 14487225 Downstream 23bp
chr7 40102501 40102501 1 + C G GBM 40102521 + 40102501 40102541 41 CCAGCCATTGATGTATGGAGCTGTGGGTAAGATAGCCTTAT GCAGCCATTGATGTATGGAGCTGTGGGTAAGATAGCCTTAT < 41bp 1 0.25573609675494 1 0.433857381343842 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:40102521 chr7:40102501 nonsynonymous SNV 0.991 3 1 hm5C_associated_SNPs_22502 0 0 1 0 2 CDK13 chr7:40102425 3'AG 40102425 Downstream 77bp
chr7 40102501 40102501 1 + C G GBM 40102521 + 40102501 40102541 41 CCAGCCATTGATGTATGGAGCTGTGGGTAAGATAGCCTTAT GCAGCCATTGATGTATGGAGCTGTGGGTAAGATAGCCTTAT < 41bp 1 0.25573609675494 1 0.433857381343842 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:40102521 chr7:40102501 nonsynonymous SNV 0.991 3 1 hm5C_associated_SNPs_22502 0 0 1 0 2 CDK13 chr7:40102526 5'GT 40102526 Upstream 26bp
chr7 135291531 135291531 1 + C T GBM 135291549 + 135291529 135291569 41 TTCGTCATGAAACAAGAATCCACATCTTGAATCTTCTCATT TTTGTCATGAAACAAGAATCCACATCTTGAATCTTCTCATT < 41bp 1 0.24541440151174 1 0.0614909827709198 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135291549 chr7:135291531 nonsynonymous SNV 0.770 2 3 hm5C_associated_SNPs_22504 0 0 1 0 1 NUP205 chr7:135291499 3'AG 135291499 Downstream 33bp
chr6 117859970 117859970 1 + C T GBM 117859950 + 117859930 117859970 41 ACAGTAGCAACAACCACAAACCACGAGAGTGGCTGGAGATC ACAGTAGCAACAACCACAAACCACGAGAGTGGCTGGAGATT < 41bp 1 0.242778583238382 1 0.100281029939651 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117859950 chr6:117859970 synonymous SNV . 0 41 hm5C_associated_SNPs_22505 0 0 0 0 1 DCBLD1 chr6:117859998 5'GT 117859998 Upstream 29bp
chrX 69354394 69354394 1 + G A GBM 69354374 + 69354354 69354394 41 CTCCTTTTTGCTCTTCCAGCCGAAATGAAGATTTGGAAGAG CTCCTTTTTGCTCTTCCAGCCGAAATGAAGATTTGGAAGAA < 41bp 1 0.555544318482541 1 0.847776055335999 experiment 0.888911363034917 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69354374 chrX:69354394 synonymous SNV . 0 41 hm5C_associated_SNPs_22506 0 0 1 0 1 IGBP1 chrX:69354373 3'AG 69354373 Downstream 22bp
chr19 50296295 50296295 1 + G T GBM 50296286 + 50296266 50296306 41 GTCAGCCTCATCACCTGTCTCTGCAAGAAGAACCCAGATGA GTCAGCCTCATCACCTGTCTCTGCAAGAATAACCCAGATGA < 41bp 1 0.789595662561244 1 0.772589445114136 experiment 0.420808674877511 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50296286 chr19:50296295 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_22507 0 0 1 0 2 AP2A1 chr19:50296293 3'AG 50296293 Downstream 3bp
chr19 50296295 50296295 1 + G T GBM 50296286 + 50296266 50296306 41 GTCAGCCTCATCACCTGTCTCTGCAAGAAGAACCCAGATGA GTCAGCCTCATCACCTGTCTCTGCAAGAATAACCCAGATGA < 41bp 1 0.789595662561244 1 0.772589445114136 experiment 0.420808674877511 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50296286 chr19:50296295 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_22507 0 0 1 0 2 AP2A1 chr19:50296349 5'GT 50296349 Upstream 55bp
chr12 105538170 105538170 1 + G T GBM 105538150 + 105538130 105538170 41 AAAGCTGGATGACCGAAACCCTTTCAAAGTTGGCATGAAAG AAAGCTGGATGACCGAAACCCTTTCAAAGTTGGCATGAAAT < 41bp 1 0.0428636073693348 1 0.121939361095428 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105538150 chr12:105538170 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_22508 0 0 1 0 1 WASHC4 chr12:105538233 5'GT 105538233 Upstream 64bp
chr10 1118122 1118122 1 + G A GBM 1118127 + 1118107 1118147 41 AAGCGCAAGTTGTTCGACTGCTCGCCAAACAAAACAGAAGC AAGCGCAAGTTGTTCAACTGCTCGCCAAACAAAACAGAAGC < 41bp 1 0.276636268710254 1 0.531671583652496 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR37 ENSG00000047056 CDS Human protein_coding chr10:1118127 chr10:1118122 synonymous SNV . 0 16 hm5C_associated_SNPs_22509 0 0 1 1 1 WDR37 chr10:1118056 3'AG 1118056 Downstream 67bp
chr7 4794998 4794998 1 + C T GBM 4795002 + 4794982 4795022 41 CCCTACTACCGGACGGCCGACAAAGGCTGGCAGGTGAAGCC CCCTACTACCGGACGGTCGACAAAGGCTGGCAGGTGAAGCC < 41bp 1 0.27101617962125 1 0.816519260406494 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4795002 chr7:4794998 nonsynonymous SNV 0.276 5 17 hm5C_associated_SNPs_22510 0 0 1 0 1 FOXK1 chr7:4795014 5'GT 4795014 Upstream 17bp
chrX 48372956 48372956 1 + T G GBM 48372950 + 48372930 48372970 41 AGCCACTGAATGTGGAGCTGCCTCGGTCAATGGTGGAAGTT AGCCACTGAATGTGGAGCTGCCTCGGGCAATGGTGGAAGTT < 41bp 1 0.0732200137983955 1 0.107996642589569 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PORCN ENSG00000102312 CDS Human protein_coding chrX:48372950 chrX:48372956 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_22511 0 0 0 0 2 PORCN chrX:48372913 3'AG 48372913 Downstream 44bp
chrX 48372956 48372956 1 + T G GBM 48372950 + 48372930 48372970 41 AGCCACTGAATGTGGAGCTGCCTCGGTCAATGGTGGAAGTT AGCCACTGAATGTGGAGCTGCCTCGGGCAATGGTGGAAGTT < 41bp 1 0.0732200137983955 1 0.107996642589569 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PORCN ENSG00000102312 CDS Human protein_coding chrX:48372950 chrX:48372956 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_22511 0 0 0 0 2 PORCN chrX:48373013 5'GT 48373013 Upstream 58bp
chr22 30074260 30074260 1 + G A GBM 30074250 + 30074230 30074270 41 TTCAACCTCATTGGTGACAGCCTGTCTTTCGACTTCAAAGA TTCAACCTCATTGGTGACAGCCTGTCTTTCAACTTCAAAGA < 41bp 1 0.102754546692602 1 0.0788628756999969 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30074250 chr22:30074260 nonsynonymous SNV 0.996 4 31 hm5C_associated_SNPs_22512 0 0 1 0 2 NF2 chr22:30074185 3'AG 30074185 Downstream 76bp
chr22 30074260 30074260 1 + G A GBM 30074250 + 30074230 30074270 41 TTCAACCTCATTGGTGACAGCCTGTCTTTCGACTTCAAAGA TTCAACCTCATTGGTGACAGCCTGTCTTTCAACTTCAAAGA < 41bp 1 0.102754546692602 1 0.0788628756999969 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30074250 chr22:30074260 nonsynonymous SNV 0.996 4 31 hm5C_associated_SNPs_22512 0 0 1 0 2 NF2 chr22:30074312 5'GT 30074312 Upstream 53bp
chr4 119631200 119631200 1 + G T GBM 119631220 + 119631200 119631240 41 GAAACATATGCATCCTATTTCAGTGCTCCTAATTCCTACTT TAAACATATGCATCCTATTTCAGTGCTCCTAATTCCTACTT < 41bp 1 0.500189092380504 1 0.233778387308121 experiment 0.999621815238993 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control METTL14 ENSG00000145388 CDS Human protein_coding chr4:119631220 chr4:119631200 stopgain 0.999 1 1 hm5C_associated_SNPs_22513 0 0 1 0 1 METTL14 chr4:119631153 3'AG 119631153 Downstream 48bp
chr5 1034387 1034387 1 + G A GBM 1034388 + 1034368 1034408 41 TCGGTGGAGGAGGACGACCGCCAGGAGTGGACGTTCACGCT TCGGTGGAGGAGGACGACCACCAGGAGTGGACGTTCACGCT < 41bp 1 0.432528514713867 1 0.75111198425293 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1034388 chr5:1034387 nonsynonymous SNV 0.040 0 20 hm5C_associated_SNPs_22515 0 0 0 0 2 NKD2 chr5:1034350 3'AG 1034350 Downstream 38bp
chr5 1034387 1034387 1 + G A GBM 1034388 + 1034368 1034408 41 TCGGTGGAGGAGGACGACCGCCAGGAGTGGACGTTCACGCT TCGGTGGAGGAGGACGACCACCAGGAGTGGACGTTCACGCT < 41bp 1 0.432528514713867 1 0.75111198425293 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1034388 chr5:1034387 nonsynonymous SNV 0.040 0 20 hm5C_associated_SNPs_22515 0 0 0 0 2 NKD2 chr5:1034445 5'GT 1034445 Upstream 59bp
chr19 45493732 45493732 1 + C T GBM 45493744 + 45493724 45493764 41 CAGTCATTCGTGGTCCTCCTCTACATCCTGGACAACGAGAC CAGTCATTTGTGGTCCTCCTCTACATCCTGGACAACGAGAC < 41bp 1 0.70608032167563 1 0.631477653980255 experiment 0.58783935664874 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45493744 chr19:45493732 synonymous SNV . 0 9 hm5C_associated_SNPs_22517 0 0 1 0 1 CLPTM1 chr19:45493653 3'AG 45493653 Downstream 80bp
chr12 56361680 56361680 1 + C A GBM 56361667 + 56361647 56361687 41 TGAGGGTGTGCCCAGTACTGCCATCCGAGAGATCTCTCTGC TGAGGGTGTGCCCAGTACTGCCATCCGAGAGATATCTCTGC < 41bp 1 0.0358608166897677 1 0.257896095514297 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK2 ENSG00000123374 CDS Human protein_coding chr12:56361667 chr12:56361680 synonymous SNV . 0 34 hm5C_associated_SNPs_22520 0 0 1 0 2 CDK2 chr12:56361641 3'AG 56361641 Downstream 40bp
chr12 56361680 56361680 1 + C A GBM 56361667 + 56361647 56361687 41 TGAGGGTGTGCCCAGTACTGCCATCCGAGAGATCTCTCTGC TGAGGGTGTGCCCAGTACTGCCATCCGAGAGATATCTCTGC < 41bp 1 0.0358608166897677 1 0.257896095514297 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK2 ENSG00000123374 CDS Human protein_coding chr12:56361667 chr12:56361680 synonymous SNV . 0 34 hm5C_associated_SNPs_22520 0 0 1 0 2 CDK2 chr12:56361718 5'GT 56361718 Upstream 39bp
chr12 56361680 56361680 1 + C A GBM 56361668 + 56361648 56361688 41 GAGGGTGTGCCCAGTACTGCCATCCGAGAGATCTCTCTGCT GAGGGTGTGCCCAGTACTGCCATCCGAGAGATATCTCTGCT < 41bp 1 0.213744329897664 1 0.065961629152298 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK2 ENSG00000123374 CDS Human protein_coding chr12:56361668 chr12:56361680 synonymous SNV . 0 33 hm5C_associated_SNPs_22521 0 0 1 0 2 CDK2 chr12:56361641 3'AG 56361641 Downstream 40bp
chr12 56361680 56361680 1 + C A GBM 56361668 + 56361648 56361688 41 GAGGGTGTGCCCAGTACTGCCATCCGAGAGATCTCTCTGCT GAGGGTGTGCCCAGTACTGCCATCCGAGAGATATCTCTGCT < 41bp 1 0.213744329897664 1 0.065961629152298 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK2 ENSG00000123374 CDS Human protein_coding chr12:56361668 chr12:56361680 synonymous SNV . 0 33 hm5C_associated_SNPs_22521 0 0 1 0 2 CDK2 chr12:56361718 5'GT 56361718 Upstream 39bp
chr2 29344297 29344297 1 + C T GBM 29344282 + 29344262 29344302 41 TAGAGGACCTTCCAGATTTTCCATTAGAAGGAAATCCTTTG TAGAGGACCTTCCAGATTTTCCATTAGAAGGAAATTCTTTG < 41bp 1 0.0576261387234818 1 0.0858077108860016 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29344282 chr2:29344297 nonsynonymous SNV 0.593 0 36 hm5C_associated_SNPs_22522 0 0 1 1 1 CLIP4 chr2:29344387 5'GT 29344387 Upstream 91bp
chr6 33169562 33169562 1 + T G GBM 33169566 + 33169546 33169586 41 TCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCCCCGTGGA TCAGCAGCTCCATTTTGTGTCCTCTTCCTTATCCCCGTGGA < 41bp 1 0.107717919118908 1 0.0401052236557007 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33169566 chr6:33169562 nonsynonymous SNV 0.997 3 17 hm5C_associated_SNPs_22523 0 0 1 0 2 SLC39A7 chr6:33169522 3'AG 33169522 Downstream 41bp
chr6 33169562 33169562 1 + T G GBM 33169566 + 33169546 33169586 41 TCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCCCCGTGGA TCAGCAGCTCCATTTTGTGTCCTCTTCCTTATCCCCGTGGA < 41bp 1 0.107717919118908 1 0.0401052236557007 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33169566 chr6:33169562 nonsynonymous SNV 0.997 3 17 hm5C_associated_SNPs_22523 0 0 1 0 2 SLC39A7 chr6:33169538 3'AG 33169538 Downstream 25bp
chr1 22336336 22336336 1 + G A GBM 22336318 + 22336298 22336338 41 GGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGAC GGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCATCAAC < 41bp 1 0.732226592686225 1 0.273189604282379 experiment 0.535546814627551 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336318 chr1:22336336 nonsynonymous SNV 0.812 0 39 hm5C_associated_SNPs_22524 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 15bp
chr1 22336336 22336336 1 + G A GBM 22336323 + 22336303 22336343 41 CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCAACTGGAT < 41bp 1 0.578653843405638 1 0.194479584693909 experiment 0.842692313188724 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336323 chr1:22336336 nonsynonymous SNV 0.812 0 34 hm5C_associated_SNPs_22525 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 15bp
chr1 22336336 22336336 1 + G A GBM 22336326 + 22336306 22336346 41 ACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGA ACGGTGTTCACTCGAGTCTCCGCCTTCATCAACTGGATTGA < 41bp 1 0.436003669654125 1 0.047990471124649 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336326 chr1:22336336 nonsynonymous SNV 0.812 0 31 hm5C_associated_SNPs_22526 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 15bp
chr1 22336336 22336336 1 + G A GBM 22336329 + 22336309 22336349 41 GTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGA GTGTTCACTCGAGTCTCCGCCTTCATCAACTGGATTGAGGA < 41bp 1 0.350901595243424 1 0.764822423458099 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336329 chr1:22336336 nonsynonymous SNV 0.812 0 28 hm5C_associated_SNPs_22527 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 15bp
chr1 22336336 22336336 1 + G A GBM 22336332 + 22336312 22336352 41 TTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGT TTCACTCGAGTCTCCGCCTTCATCAACTGGATTGAGGAGGT < 41bp 1 0.497378882853205 1 0.307883381843567 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336332 chr1:22336336 nonsynonymous SNV 0.812 0 25 hm5C_associated_SNPs_22528 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 15bp
chr1 22336336 22336336 1 + G A GBM 22336335 + 22336315 22336355 41 ACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGTGAG ACTCGAGTCTCCGCCTTCATCAACTGGATTGAGGAGGTGAG < 41bp 1 0.609569560247841 1 0.500301837921143 experiment 0.780860879504319 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336335 chr1:22336336 nonsynonymous SNV 0.812 0 22 hm5C_associated_SNPs_22529 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 15bp
chr16 57486775 57486775 1 + G A GBM 57486774 + 57486754 57486794 41 GTGAGGAGCAGTTGCAGCACCGCATCCTGACGGCAGCCCTT GTGAGGAGCAGTTGCAGCACCACATCCTGACGGCAGCCCTT < 41bp 1 0.555883455599327 1 0.815593719482422 experiment 0.888233088801346 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57486774 chr16:57486775 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_22531 1 0 1 0 2 COQ9 chr16:57486713 3'AG 57486713 Downstream 63bp
chr16 57486775 57486775 1 + G A GBM 57486774 + 57486754 57486794 41 GTGAGGAGCAGTTGCAGCACCGCATCCTGACGGCAGCCCTT GTGAGGAGCAGTTGCAGCACCACATCCTGACGGCAGCCCTT < 41bp 1 0.555883455599327 1 0.815593719482422 experiment 0.888233088801346 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57486774 chr16:57486775 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_22531 1 0 1 0 2 COQ9 chr16:57486848 5'GT 57486848 Upstream 74bp
chr5 134154667 134154667 1 + G A GBM 134154670 + 134154650 134154690 41 AAGAACCCAAGGAAGGCGAGCGGAAGATTTACTTGGCAATT AAGAACCCAAGGAAGGCAAGCGGAAGATTTACTTGGCAATT < 41bp 1 0.714160288913061 1 0.775851845741272 experiment 0.571679422173878 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134154670 chr5:134154667 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_22533 0 0 1 0 1 DDX46 chr5:134154694 5'GT 134154694 Upstream 28bp
chr17 4859425 4859425 1 + G A GBM 4859423 + 4859403 4859443 41 CAACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAG CAACCAGATCGGCTCGGTGACCAAATCGATCCAGGCGTGAG < 41bp 1 0.389630915145416 1 0.119606345891953 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859423 chr17:4859425 nonsynonymous SNV 0.641 2 23 hm5C_associated_SNPs_22534 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 64bp
chr17 4859425 4859425 1 + G A GBM 4859423 + 4859403 4859443 41 CAACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAG CAACCAGATCGGCTCGGTGACCAAATCGATCCAGGCGTGAG < 41bp 1 0.389630915145416 1 0.119606345891953 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859423 chr17:4859425 nonsynonymous SNV 0.641 2 23 hm5C_associated_SNPs_22534 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 14bp
chr17 4859425 4859425 1 + G A GBM 4859424 + 4859404 4859444 41 AACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAGT AACCAGATCGGCTCGGTGACCAAATCGATCCAGGCGTGAGT < 41bp 1 0.341219010061976 1 0.663475573062897 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859424 chr17:4859425 nonsynonymous SNV 0.641 2 22 hm5C_associated_SNPs_22535 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 64bp
chr17 4859425 4859425 1 + G A GBM 4859424 + 4859404 4859444 41 AACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAGT AACCAGATCGGCTCGGTGACCAAATCGATCCAGGCGTGAGT < 41bp 1 0.341219010061976 1 0.663475573062897 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859424 chr17:4859425 nonsynonymous SNV 0.641 2 22 hm5C_associated_SNPs_22535 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 14bp
chr1 28279757 28279757 1 + T C GBM 28279755 + 28279735 28279775 41 TCTATGCTGCTTTGGGAAATCATGATTTTCACCCCAAAAAC TCTATGCTGCTTTGGGAAATCACGATTTTCACCCCAAAAAC < 41bp 1 0.789048247847735 1 0.745369553565979 experiment 0.421903504304531 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMPDL3B ENSG00000130768 CDS Human protein_coding chr1:28279755 chr1:28279757 synonymous SNV . 0 23 hm5C_associated_SNPs_22536 0 0 0 0 1 SMPDL3B chr1:28279726 3'AG 28279726 Downstream 32bp
chr19 35501038 35501038 1 + G A GBM 35501031 + 35501011 35501051 41 TGCAGCGTGAGATCCTGCTCCAGGGCCGCCTCTACCTCTCT TGCAGCGTGAGATCCTGCTCCAGGGCCACCTCTACCTCTCT < 41bp 1 0.663024500111681 1 0.898587942123413 experiment 0.673950999776638 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35501031 chr19:35501038 nonsynonymous SNV 1.000 5 28 hm5C_associated_SNPs_22538 0 0 1 0 2 GRAMD1A chr19:35500996 3'AG 35500996 Downstream 43bp
chr19 35501038 35501038 1 + G A GBM 35501031 + 35501011 35501051 41 TGCAGCGTGAGATCCTGCTCCAGGGCCGCCTCTACCTCTCT TGCAGCGTGAGATCCTGCTCCAGGGCCACCTCTACCTCTCT < 41bp 1 0.663024500111681 1 0.898587942123413 experiment 0.673950999776638 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35501031 chr19:35501038 nonsynonymous SNV 1.000 5 28 hm5C_associated_SNPs_22538 0 0 1 0 2 GRAMD1A chr19:35501099 5'GT 35501099 Upstream 62bp
chr10 99327873 99327873 1 + T C GBM 99327885 + 99327865 99327905 41 ATCCTGGATGGAGCCAGCATCACCCTGCCTCATGGTAAGTG ATCCTGGACGGAGCCAGCATCACCCTGCCTCATGGTAAGTG < 41bp 1 0.389029672702474 1 0.0565467476844788 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBTD1 ENSG00000165886 CDS Human protein_coding chr10:99327885 chr10:99327873 synonymous SNV . 0 9 hm5C_associated_SNPs_22541 0 0 0 0 1 UBTD1 chr10:99327898 5'GT 99327898 Upstream 26bp
chr7 128486389 128486389 1 + C T GBM 128486405 + 128486385 128486425 41 AGGTCGCTGTGCCCAAGAGCCCCTTCCGAGTGGGCGTGACC AGGTTGCTGTGCCCAAGAGCCCCTTCCGAGTGGGCGTGACC < 41bp 1 0.0225025286035274 1 0.0272628962993622 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486405 chr7:128486389 synonymous SNV . 0 5 hm5C_associated_SNPs_22542 0 0 1 0 1 FLNC chr7:128486355 3'AG 128486355 Downstream 35bp
chr5 139917073 139917073 1 + T A GBM 139917055 + 139917035 139917075 41 GATACCTCCCCCAATTGGAACAGAGAGACTGGCCCGAATTC GATACCTCCCCCAATTGGAACAGAGAGACTGGCCCGAAATC < 41bp 1 0.26851109633959 1 0.486939817667007 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139917055 chr5:139917073 nonsynonymous SNV 0.998 4 39 hm5C_associated_SNPs_22549 0 0 1 0 1 ANKHD1;ANKHD1-EIF4EBP3 chr5:139916974 3'AG 139916974 Downstream 100bp
chr22 30038260 30038260 1 + G A GBM 30038248 + 30038228 30038268 41 CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACACCGTCCAG < 41bp 1 0.658857409242081 1 0.581557035446167 experiment 0.682285181515839 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30038248 chr22:30038260 nonsynonymous SNV 0.457 4 33 hm5C_associated_SNPs_22550 0 0 1 0 2 NF2 chr22:30038191 3'AG 30038191 Downstream 70bp
chr22 30038260 30038260 1 + G A GBM 30038248 + 30038228 30038268 41 CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACACCGTCCAG < 41bp 1 0.658857409242081 1 0.581557035446167 experiment 0.682285181515839 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30038248 chr22:30038260 nonsynonymous SNV 0.457 4 33 hm5C_associated_SNPs_22550 0 0 1 0 2 NF2 chr22:30038274 5'GT 30038274 Upstream 15bp
chr15 64418385 64418385 1 + C T GBM 64418395 + 64418375 64418415 41 AGAATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTC AGAATGGCTTTATTGTCCCTCCGCCCCCGGAGAAGAGCCTC < 41bp 1 0.106631930116983 1 0.262977004051208 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418395 chr15:64418385 synonymous SNV . 0 11 hm5C_associated_SNPs_22551 0 0 1 0 1 SNX1 chr15:64418419 5'GT 64418419 Upstream 35bp
chr15 64418385 64418385 1 + C T GBM 64418396 + 64418376 64418416 41 GAATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTCA GAATGGCTTTATTGTCCCTCCGCCCCCGGAGAAGAGCCTCA < 41bp 1 0.191078818755604 1 0.548911869525909 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418396 chr15:64418385 synonymous SNV . 0 10 hm5C_associated_SNPs_22552 0 0 1 0 1 SNX1 chr15:64418419 5'GT 64418419 Upstream 35bp
chr15 64418385 64418385 1 + C T GBM 64418398 + 64418378 64418418 41 ATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTCATA ATGGCTTTATTGTCCCTCCGCCCCCGGAGAAGAGCCTCATA < 41bp 1 0.142852229694944 1 0.108212649822235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418398 chr15:64418385 synonymous SNV . 0 8 hm5C_associated_SNPs_22553 0 0 1 0 1 SNX1 chr15:64418419 5'GT 64418419 Upstream 35bp
chr11 61252177 61252177 1 + C T GBM 61252163 + 61252143 61252183 41 GCCCTTCTTCCTCCCAGGTCCGGAAGGTCCATTTCGACACC GCCCTTCTTCCTCCCAGGTCCGGAAGGTCCATTTTGACACC < 41bp 1 0.795279962231813 1 0.710768043994904 experiment 0.409440075536375 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61252163 chr11:61252177 synonymous SNV . 0 35 hm5C_associated_SNPs_22554 0 0 0 0 1 PPP1R32 chr11:61252160 3'AG 61252160 Downstream 18bp
chr11 61252177 61252177 1 + C T GBM 61252171 + 61252151 61252191 41 TCCTCCCAGGTCCGGAAGGTCCATTTCGACACCCAGGAGCA TCCTCCCAGGTCCGGAAGGTCCATTTTGACACCCAGGAGCA < 41bp 1 0.142343594124454 1 0.0357209742069244 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61252171 chr11:61252177 synonymous SNV . 0 27 hm5C_associated_SNPs_22555 0 0 0 0 1 PPP1R32 chr11:61252160 3'AG 61252160 Downstream 18bp
chr19 45797651 45797651 1 + T G GBM 45797648 + 45797628 45797668 41 ATGACCCGCAGAAACACCTACGTTTGCACAGAACGCCCGGG ATGACCCGCAGAAACACCTACGTGTGCACAGAACGCCCGGG < 41bp 1 0.202453101689119 1 0.268726408481598 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45797648 chr19:45797651 synonymous SNV . 0 24 hm5C_associated_SNPs_22556 0 0 1 0 2 MARK4 chr19:45797607 3'AG 45797607 Downstream 45bp
chr19 45797651 45797651 1 + T G GBM 45797648 + 45797628 45797668 41 ATGACCCGCAGAAACACCTACGTTTGCACAGAACGCCCGGG ATGACCCGCAGAAACACCTACGTGTGCACAGAACGCCCGGG < 41bp 1 0.202453101689119 1 0.268726408481598 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45797648 chr19:45797651 synonymous SNV . 0 24 hm5C_associated_SNPs_22556 0 0 1 0 2 MARK4 chr19:45797710 5'GT 45797710 Upstream 60bp
chr20 5154267 5154267 1 + G A GBM 5154273 + 5154253 5154293 41 GCAGATGATACCCCGGAGGTCCTCAATAGGGCCCTTTCCAA GCAGATGATACCCCAGAGGTCCTCAATAGGGCCCTTTCCAA < 41bp 1 0.187018042825879 1 0.0531316697597504 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDS2 ENSG00000101290 CDS Human protein_coding chr20:5154273 chr20:5154267 synonymous SNV . 0 15 hm5C_associated_SNPs_22560 0 0 1 0 2 CDS2 chr20:5154169 3'AG 5154169 Downstream 99bp
chr20 5154267 5154267 1 + G A GBM 5154273 + 5154253 5154293 41 GCAGATGATACCCCGGAGGTCCTCAATAGGGCCCTTTCCAA GCAGATGATACCCCAGAGGTCCTCAATAGGGCCCTTTCCAA < 41bp 1 0.187018042825879 1 0.0531316697597504 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDS2 ENSG00000101290 CDS Human protein_coding chr20:5154273 chr20:5154267 synonymous SNV . 0 15 hm5C_associated_SNPs_22560 0 0 1 0 2 CDS2 chr20:5154305 5'GT 5154305 Upstream 39bp
chrX 129159308 129159308 1 + G A GBM 129159311 + 129159291 129159331 41 AAATATCAGACTGGGGAGTACCTGACAGAGCAAGAAGACGA AAATATCAGACTGGGGAATACCTGACAGAGCAAGAAGACGA < 41bp 1 0.181098196087018 1 0.115467399358749 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129159311 chrX:129159308 synonymous SNV . 0 18 hm5C_associated_SNPs_22562 0 0 1 0 1 BCORL1 chrX:129159354 5'GT 129159354 Upstream 47bp
chr2 54872404 54872404 1 + C T GBM 54872413 + 54872393 54872433 41 AAGAAGGAGATCGAAGAGCTCCAAAGCCAAGCCCAGGCCCT AAGAAGGAGATTGAAGAGCTCCAAAGCCAAGCCCAGGCCCT < 41bp 1 0.254107655765503 1 0.102052271366119 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872413 chr2:54872404 synonymous SNV . 0 12 hm5C_associated_SNPs_22565 0 0 1 0 1 SPTBN1 chr2:54872366 3'AG 54872366 Downstream 39bp
chr2 54872404 54872404 1 + C T GBM 54872420 + 54872400 54872440 41 AGATCGAAGAGCTCCAAAGCCAAGCCCAGGCCCTGAGTCAG AGATTGAAGAGCTCCAAAGCCAAGCCCAGGCCCTGAGTCAG < 41bp 1 0.300633400706417 1 0.53986257314682 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872420 chr2:54872404 synonymous SNV . 0 5 hm5C_associated_SNPs_22566 0 0 1 0 1 SPTBN1 chr2:54872366 3'AG 54872366 Downstream 39bp
chr3 57294017 57294017 1 + C T GBM 57294032 + 57294012 57294052 41 AGAATCGCATTTATTAGTCACTTGTGACTGTTTAAAGTAAG AGAATTGCATTTATTAGTCACTTGTGACTGTTTAAAGTAAG < 41bp 1 0.125160025863239 1 0.0864229500293732 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control APPL1 ENSG00000157500 CDS Human protein_coding chr3:57294032 chr3:57294017 nonsynonymous SNV 0.999 3 6 hm5C_associated_SNPs_22567 0 0 1 0 1 APPL1 chr3:57294047 5'GT 57294047 Upstream 31bp
chr17 20135090 20135090 1 + G A GBM 20135081 + 20135061 20135101 41 TTATTTCTAGGTAGTGTGATCAAGCTGGAGGAACAGAAGTC TTATTTCTAGGTAGTGTGATCAAGCTGGAAGAACAGAAGTC < 41bp 1 0.287031181250522 1 0.495704114437103 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135081 chr17:20135090 synonymous SNV . 0 30 hm5C_associated_SNPs_22568 0 0 1 0 2 SPECC1 chr17:20135071 3'AG 20135071 Downstream 20bp
chr17 20135090 20135090 1 + G A GBM 20135081 + 20135061 20135101 41 TTATTTCTAGGTAGTGTGATCAAGCTGGAGGAACAGAAGTC TTATTTCTAGGTAGTGTGATCAAGCTGGAAGAACAGAAGTC < 41bp 1 0.287031181250522 1 0.495704114437103 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135081 chr17:20135090 synonymous SNV . 0 30 hm5C_associated_SNPs_22568 0 0 1 0 2 SPECC1 chr17:20135144 5'GT 20135144 Upstream 55bp
chr17 20135090 20135090 1 + G A GBM 20135094 + 20135074 20135114 41 GTGTGATCAAGCTGGAGGAACAGAAGTCAGACCTGGAGAGG GTGTGATCAAGCTGGAAGAACAGAAGTCAGACCTGGAGAGG < 41bp 1 0.676896443918359 1 0.262619107961655 experiment 0.646207112163283 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135094 chr17:20135090 synonymous SNV . 0 17 hm5C_associated_SNPs_22569 0 0 1 0 2 SPECC1 chr17:20135071 3'AG 20135071 Downstream 20bp
chr17 20135090 20135090 1 + G A GBM 20135094 + 20135074 20135114 41 GTGTGATCAAGCTGGAGGAACAGAAGTCAGACCTGGAGAGG GTGTGATCAAGCTGGAAGAACAGAAGTCAGACCTGGAGAGG < 41bp 1 0.676896443918359 1 0.262619107961655 experiment 0.646207112163283 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135094 chr17:20135090 synonymous SNV . 0 17 hm5C_associated_SNPs_22569 0 0 1 0 2 SPECC1 chr17:20135144 5'GT 20135144 Upstream 55bp
chr17 20135090 20135090 1 + G A GBM 20135101 + 20135081 20135121 41 CAAGCTGGAGGAACAGAAGTCAGACCTGGAGAGGCAGCTGA CAAGCTGGAAGAACAGAAGTCAGACCTGGAGAGGCAGCTGA < 41bp 1 0.188952194966483 1 0.151825547218323 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135101 chr17:20135090 synonymous SNV . 0 10 hm5C_associated_SNPs_22570 0 0 1 0 2 SPECC1 chr17:20135071 3'AG 20135071 Downstream 20bp
chr17 20135090 20135090 1 + G A GBM 20135101 + 20135081 20135121 41 CAAGCTGGAGGAACAGAAGTCAGACCTGGAGAGGCAGCTGA CAAGCTGGAAGAACAGAAGTCAGACCTGGAGAGGCAGCTGA < 41bp 1 0.188952194966483 1 0.151825547218323 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135101 chr17:20135090 synonymous SNV . 0 10 hm5C_associated_SNPs_22570 0 0 1 0 2 SPECC1 chr17:20135144 5'GT 20135144 Upstream 55bp
chr17 40840915 40840915 1 + G A GBM 40840909 + 40840889 40840929 41 TCCAGGTTGTCCCAAGCCAGCCAGTCGATGGGACTGCCACT TCCAGGTTGTCCCAAGCCAGCCAGTCAATGGGACTGCCACT < 41bp 1 0.138835315781306 1 0.0751968324184418 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40840909 chr17:40840915 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_22571 0 0 0 0 1 CNTNAP1 chr17:40840894 3'AG 40840894 Downstream 22bp
chr16 57243040 57243040 1 + G T GBM 57243043 + 57243023 57243063 41 GAGTTATTCCACTGGAAGATCCACTGGGACCAGCTGTTATA GAGTTATTCCACTGGAATATCCACTGGGACCAGCTGTTATA < 41bp 1 0.213680489603058 1 0.0871851742267609 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57243043 chr16:57243040 nonsynonymous SNV 0.997 5 18 hm5C_associated_SNPs_22572 0 0 1 0 2 RSPRY1 chr16:57242987 3'AG 57242987 Downstream 54bp
chr16 57243040 57243040 1 + G T GBM 57243043 + 57243023 57243063 41 GAGTTATTCCACTGGAAGATCCACTGGGACCAGCTGTTATA GAGTTATTCCACTGGAATATCCACTGGGACCAGCTGTTATA < 41bp 1 0.213680489603058 1 0.0871851742267609 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57243043 chr16:57243040 nonsynonymous SNV 0.997 5 18 hm5C_associated_SNPs_22572 0 0 1 0 2 RSPRY1 chr16:57243099 5'GT 57243099 Upstream 60bp
chr1 145518146 145518146 1 + G T GBM 145518156 + 145518136 145518176 41 GTTGTCCTGAGATTCTGCATCACTGTTAGTCACCTCAATCG GTTGTCCTGATATTCTGCATCACTGTTAGTCACCTCAATCG < 41bp 1 0.225964053953401 1 0.0460611879825592 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PEX11B ENSG00000131779 CDS Human protein_coding chr1:145518156 chr1:145518146 nonsynonymous SNV . 0 11 hm5C_associated_SNPs_22573 0 0 1 0 1 PEX11B chr1:145518071 3'AG 145518071 Downstream 76bp
chr11 67160985 67160985 1 + C T GBM 67160984 + 67160964 67161004 41 CAGTCTTTCCTGTCTGTCTTCCGCTCACTGGCGATGCTGGA CAGTCTTTCCTGTCTGTCTTCTGCTCACTGGCGATGCTGGA < 41bp 1 0.261559936730888 1 0.455168038606644 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD9A ENSG00000172613 CDS Human protein_coding chr11:67160984 chr11:67160985 nonsynonymous SNV 0.945 4 22 hm5C_associated_SNPs_22574 0 0 1 0 2 RAD9A chr11:67160967 3'AG 67160967 Downstream 19bp
chr11 67160985 67160985 1 + C T GBM 67160984 + 67160964 67161004 41 CAGTCTTTCCTGTCTGTCTTCCGCTCACTGGCGATGCTGGA CAGTCTTTCCTGTCTGTCTTCTGCTCACTGGCGATGCTGGA < 41bp 1 0.261559936730888 1 0.455168038606644 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD9A ENSG00000172613 CDS Human protein_coding chr11:67160984 chr11:67160985 nonsynonymous SNV 0.945 4 22 hm5C_associated_SNPs_22574 0 0 1 0 2 RAD9A chr11:67161081 5'GT 67161081 Upstream 97bp
chr1 162040020 162040020 1 + T C GBM 162040009 + 162039989 162040029 41 AACCTTGTGGACGATGGGCACGACCTGCGGATCCCCTTGCA AACCTTGTGGACGATGGGCACGACCTGCGGACCCCCTTGCA < 41bp 1 0.299251522278906 1 0.363204479217529 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOS1AP ENSG00000198929 CDS Human protein_coding chr1:162040009 chr1:162040020 nonsynonymous SNV 0.999 3 32 hm5C_associated_SNPs_22575 0 0 1 0 1 NOS1AP chr1:162040072 5'GT 162040072 Upstream 53bp
chr5 176520478 176520478 1 + C T GBM 176520483 + 176520463 176520503 41 GCGTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCCGGCCTCG GCGTCTCTCCTCCAGTGGCCCCGCCTTGCTCGCCGGCCTCG < 41bp 1 0.147655102968534 1 0.0563865005970001 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176520483 chr5:176520478 nonsynonymous SNV 0.283 0 16 hm5C_associated_SNPs_22576 0 0 1 0 3 FGFR4 chr5:176520407 3'AG 176520407 Downstream 72bp
chr5 176520478 176520478 1 + C T GBM 176520483 + 176520463 176520503 41 GCGTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCCGGCCTCG GCGTCTCTCCTCCAGTGGCCCCGCCTTGCTCGCCGGCCTCG < 41bp 1 0.147655102968534 1 0.0563865005970001 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176520483 chr5:176520478 nonsynonymous SNV 0.283 0 16 hm5C_associated_SNPs_22576 0 0 1 0 3 FGFR4 chr5:176520502 5'GT 176520502 Upstream 25bp
chr5 176520478 176520478 1 + C T GBM 176520483 + 176520463 176520503 41 GCGTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCCGGCCTCG GCGTCTCTCCTCCAGTGGCCCCGCCTTGCTCGCCGGCCTCG < 41bp 1 0.147655102968534 1 0.0563865005970001 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176520483 chr5:176520478 nonsynonymous SNV 0.283 0 16 hm5C_associated_SNPs_22576 0 0 1 0 3 FGFR4 chr5:176520552 5'GT 176520552 Upstream 75bp
chr11 47289884 47289884 1 + A G GBM 47289881 + 47289861 47289901 41 ATATGTGGAAGCCCTGCATGCCTACGTCTCCATCCACCATC ATATGTGGAAGCCCTGCATGCCTGCGTCTCCATCCACCATC < 41bp 1 0.189272397685277 1 0.0236691832542419 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47289881 chr11:47289884 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_22577 0 0 1 0 2 NR1H3 chr11:47289812 3'AG 47289812 Downstream 73bp
chr11 47289884 47289884 1 + A G GBM 47289881 + 47289861 47289901 41 ATATGTGGAAGCCCTGCATGCCTACGTCTCCATCCACCATC ATATGTGGAAGCCCTGCATGCCTGCGTCTCCATCCACCATC < 41bp 1 0.189272397685277 1 0.0236691832542419 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47289881 chr11:47289884 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_22577 0 0 1 0 2 NR1H3 chr11:47289906 5'GT 47289906 Upstream 23bp
chr11 47289884 47289884 1 + A G GBM 47289902 + 47289882 47289922 41 CTACGTCTCCATCCACCATCCCCATGTGAGTCTCCCCATGG CTGCGTCTCCATCCACCATCCCCATGTGAGTCTCCCCATGG < 41bp 1 0.186327347332967 1 0.408744156360626 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47289902 chr11:47289884 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_22578 0 0 1 0 2 NR1H3 chr11:47289812 3'AG 47289812 Downstream 73bp
chr11 47289884 47289884 1 + A G GBM 47289902 + 47289882 47289922 41 CTACGTCTCCATCCACCATCCCCATGTGAGTCTCCCCATGG CTGCGTCTCCATCCACCATCCCCATGTGAGTCTCCCCATGG < 41bp 1 0.186327347332967 1 0.408744156360626 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47289902 chr11:47289884 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_22578 0 0 1 0 2 NR1H3 chr11:47289906 5'GT 47289906 Upstream 23bp
chr19 38633332 38633332 1 + A G GBM 38633337 + 38633317 38633357 41 CCACCTACGTGAGATACAAGCCATCCCCAGAAAGGTCAGCC CCACCTACGTGAGATGCAAGCCATCCCCAGAAAGGTCAGCC < 41bp 1 0.0112704963498152 1 0.422033131122589 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38633337 chr19:38633332 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_22579 0 0 0 0 1 SIPA1L3 chr19:38633350 5'GT 38633350 Upstream 19bp
chr1 151374077 151374077 1 + G T GBM 151374064 + 151374044 151374084 41 AGGTGTTGAAATAGAGGGACCATTGTCTACAGAGACCAACT AGGTGTTGAAATAGAGGGACCATTGTCTACAGATACCAACT < 41bp 1 0.111090706792158 1 0.11722406744957 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMB4 ENSG00000159377 CDS Human protein_coding chr1:151374064 chr1:151374077 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_22580 0 0 1 0 2 PSMB4 chr1:151374018 3'AG 151374018 Downstream 60bp
chr1 151374077 151374077 1 + G T GBM 151374064 + 151374044 151374084 41 AGGTGTTGAAATAGAGGGACCATTGTCTACAGAGACCAACT AGGTGTTGAAATAGAGGGACCATTGTCTACAGATACCAACT < 41bp 1 0.111090706792158 1 0.11722406744957 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMB4 ENSG00000159377 CDS Human protein_coding chr1:151374064 chr1:151374077 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_22580 0 0 1 0 2 PSMB4 chr1:151374106 5'GT 151374106 Upstream 30bp
chr17 37872568 37872568 1 + G A GBM 37872587 + 37872567 37872607 41 GGCCTGCCACCAGCTGTGCGCCCGAGGGCACTGCTGGGGTC GACCTGCCACCAGCTGTGCGCCCGAGGGCACTGCTGGGGTC < 41bp 1 0.799079439451448 1 0.598849475383759 experiment 0.401841121097104 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37872587 chr17:37872568 nonsynonymous SNV 0.059 0 2 hm5C_associated_SNPs_22581 0 0 1 0 1 ERBB2 chr17:37872554 3'AG 37872554 Downstream 15bp
chr13 53039487 53039487 1 + G T GBM 53039491 + 53039471 53039511 41 GATTAAAAATATTCCAGATGCCAAAAAGCTTGTTAAGTATT GATTAAAAATATTCCATATGCCAAAAAGCTTGTTAAGTATT < 41bp 1 0.266928341262036 1 0.149742096662521 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CKAP2 ENSG00000136108 CDS Human protein_coding chr13:53039491 chr13:53039487 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_22582 0 0 1 0 1 CKAP2 chr13:53039430 3'AG 53039430 Downstream 58bp
chr19 3119218 3119218 1 + G T GBM 3119221 + 3119201 3119241 41 CAGAACCGGATGGAGGAGAGCAAAGCCCTGTTCCGGACCAT CAGAACCGGATGGAGGATAGCAAAGCCCTGTTCCGGACCAT < 41bp 1 0.393011177321995 1 0.466029137372971 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GNA11 ENSG00000088256 CDS Human protein_coding chr19:3119221 chr19:3119218 nonsynonymous SNV 0.993 5 18 hm5C_associated_SNPs_22583 0 0 1 0 1 GNA11 chr19:3119204 3'AG 3119204 Downstream 15bp
chr11 61503224 61503224 1 + A G GBM 61503225 + 61503205 61503245 41 CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTGAGCG CCCAAGGATGCCCTGACTGGCCTGACGGGTGATGCTGAGCG < 41bp 1 0.218748378911637 1 0.0968572199344635 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503225 chr11:61503224 nonsynonymous SNV 0.987 4 20 hm5C_associated_SNPs_22584 0 0 0 0 2 DAGLA chr11:61503211 3'AG 61503211 Downstream 14bp
chr11 61503224 61503224 1 + A G GBM 61503225 + 61503205 61503245 41 CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTGAGCG CCCAAGGATGCCCTGACTGGCCTGACGGGTGATGCTGAGCG < 41bp 1 0.218748378911637 1 0.0968572199344635 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503225 chr11:61503224 nonsynonymous SNV 0.987 4 20 hm5C_associated_SNPs_22584 0 0 0 0 2 DAGLA chr11:61503288 5'GT 61503288 Upstream 65bp
chr19 39398202 39398202 1 + G A GBM 39398207 + 39398187 39398227 41 ACCCCATCCTCGCCCGCCTCCTCCGTGCACACGGAGCCCCT ACCCCATCCTCGCCCACCTCCTCCGTGCACACGGAGCCCCT < 41bp 1 0.788744653822174 1 0.816341757774353 experiment 0.422510692355651 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39398207 chr19:39398202 nonsynonymous SNV 0.979 0 16 hm5C_associated_SNPs_22585 0 0 1 0 1 NFKBIB chr19:39398299 5'GT 39398299 Upstream 98bp
chr7 4794990 4794990 1 + C T GBM 4795002 + 4794982 4795022 41 CCCTACTACCGGACGGCCGACAAAGGCTGGCAGGTGAAGCC CCCTACTATCGGACGGCCGACAAAGGCTGGCAGGTGAAGCC < 41bp 1 0.237929626572687 1 0.54475325345993 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4795002 chr7:4794990 synonymous SNV . 0 9 hm5C_associated_SNPs_22588 0 0 1 0 1 FOXK1 chr7:4795014 5'GT 4795014 Upstream 25bp
chr11 126279186 126279186 1 + G A GBM 126279193 + 126279173 126279213 41 GTTTCTGGAAACAGCCTCCCCTCATCTGGGATGTCAATCCT GTTTCTGGAAACAACCTCCCCTCATCTGGGATGTCAATCCT < 41bp 1 0.313972542105821 1 0.116438269615173 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ST3GAL4 ENSG00000110080 CDS Human protein_coding chr11:126279193 chr11:126279186 synonymous SNV . 0 14 hm5C_associated_SNPs_22589 0 0 1 0 1 ST3GAL4 chr11:126279163 3'AG 126279163 Downstream 24bp
chr15 22955251 22955251 1 + C T GBM 22955235 + 22955215 22955255 41 AAGGACCCCAAGAGCGGCTTCGACATAAAAGTACCACGCCG AAGGACCCCAAGAGCGGCTTCGACATAAAAGTACCATGCCG < 41bp 1 0.744954659169034 1 0.510834574699402 experiment 0.510090681661932 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22955235 chr15:22955251 nonsynonymous SNV . 0 37 hm5C_associated_SNPs_22590 0 0 1 0 1 CYFIP1 chr15:22955280 5'GT 22955280 Upstream 30bp
chr4 52740458 52740458 1 + C A GBM 52740449 + 52740429 52740469 41 TTTTGTAGGAAGTCTGCGGTCTTGCAGTTCTTCAGACTGCT TTTTGTAGGAAGTCTGCGGTCTTGCAGTTATTCAGACTGCT < 41bp 1 0.223902196340122 1 0.0580459535121918 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DCUN1D4 ENSG00000109184 CDS Human protein_coding chr4:52740449 chr4:52740458 nonsynonymous SNV 0.998 1 30 hm5C_associated_SNPs_22591 0 0 1 1 2 DCUN1D4 chr4:52740437 3'AG 52740437 Downstream 22bp
chr4 52740458 52740458 1 + C A GBM 52740449 + 52740429 52740469 41 TTTTGTAGGAAGTCTGCGGTCTTGCAGTTCTTCAGACTGCT TTTTGTAGGAAGTCTGCGGTCTTGCAGTTATTCAGACTGCT < 41bp 1 0.223902196340122 1 0.0580459535121918 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DCUN1D4 ENSG00000109184 CDS Human protein_coding chr4:52740449 chr4:52740458 nonsynonymous SNV 0.998 1 30 hm5C_associated_SNPs_22591 0 0 1 1 2 DCUN1D4 chr4:52740551 5'GT 52740551 Upstream 94bp
chr1 94964161 94964161 1 + C T GBM 94964179 + 94964159 94964199 41 TTCGATCTGGGGCTAATGTTCTAATTTGTGGTCCAAATGGC TTTGATCTGGGGCTAATGTTCTAATTTGTGGTCCAAATGGC < 41bp 1 0.563048393432145 1 0.209808140993118 experiment 0.87390321313571 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94964179 chr1:94964161 stopgain 0.999 0 3 hm5C_associated_SNPs_22595 0 0 1 0 2 ABCD3 chr1:94964158 3'AG 94964158 Downstream 4bp
chr1 94964161 94964161 1 + C T GBM 94964179 + 94964159 94964199 41 TTCGATCTGGGGCTAATGTTCTAATTTGTGGTCCAAATGGC TTTGATCTGGGGCTAATGTTCTAATTTGTGGTCCAAATGGC < 41bp 1 0.563048393432145 1 0.209808140993118 experiment 0.87390321313571 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94964179 chr1:94964161 stopgain 0.999 0 3 hm5C_associated_SNPs_22595 0 0 1 0 2 ABCD3 chr1:94964235 5'GT 94964235 Upstream 75bp
chr7 128445491 128445491 1 + G T GBM 128445505 + 128445485 128445525 41 AGAAATGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGT AGAAATTGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGT < 41bp 1 0.165889388361434 1 0.292534410953522 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445505 chr7:128445491 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_22597 0 0 1 0 2 CCDC136 chr7:128445413 3'AG 128445413 Downstream 79bp
chr7 128445491 128445491 1 + G T GBM 128445505 + 128445485 128445525 41 AGAAATGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGT AGAAATTGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGT < 41bp 1 0.165889388361434 1 0.292534410953522 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445505 chr7:128445491 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_22597 0 0 1 0 2 CCDC136 chr7:128445578 5'GT 128445578 Upstream 88bp
chr7 128445491 128445491 1 + G T GBM 128445510 + 128445490 128445530 41 TGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGTTACGG TTGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGTTACGG < 41bp 1 0.337702138090947 1 0.374267727136612 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445510 chr7:128445491 nonsynonymous SNV 1.000 0 2 hm5C_associated_SNPs_22598 0 0 1 0 2 CCDC136 chr7:128445413 3'AG 128445413 Downstream 79bp
chr7 128445491 128445491 1 + G T GBM 128445510 + 128445490 128445530 41 TGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGTTACGG TTGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGTTACGG < 41bp 1 0.337702138090947 1 0.374267727136612 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445510 chr7:128445491 nonsynonymous SNV 1.000 0 2 hm5C_associated_SNPs_22598 0 0 1 0 2 CCDC136 chr7:128445578 5'GT 128445578 Upstream 88bp
chr15 22862986 22862986 1 + A G GBM 22863000 + 22862980 22863020 41 TGATGTATGTGTGGATAGATCATCGGAATCTGTGACATGCC TGATGTGTGTGTGGATAGATCATCGGAATCTGTGACATGCC < 41bp 1 0.443433657872303 1 0.0760754346847534 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBGCP5 ENSG00000153575 CDS Human other chr15:22863000 chr15:22862986 synonymous SNV . 0 7 hm5C_associated_SNPs_22599 0 0 1 0 1 TUBGCP5 chr15:22862935 3'AG 22862935 Downstream 52bp
chr17 30692352 30692352 1 + T G GBM 30692372 + 30692352 30692392 41 TGCCCCCACCTGTTCCACGTCCTGGAATTCCTCCAATGACT GGCCCCCACCTGTTCCACGTCCTGGAATTCCTCCAATGACT < 41bp 1 0.261336504202298 1 0.267658710479736 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30692372 chr17:30692352 nonsynonymous SNV 0.976 2 1 hm5C_associated_SNPs_22600 0 0 1 0 1 ZNF207 chr17:30692349 3'AG 30692349 Downstream 4bp
chr12 48528823 48528823 1 + T G GBM 48528825 + 48528805 48528845 41 CAGAAGACATCAAGAATGTTCGTATGAATGAAGCCAGAGAG CAGAAGACATCAAGAATGGTCGTATGAATGAAGCCAGAGAG < 41bp 1 0.22890894249323 1 0.195775479078293 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PFKM ENSG00000152556 splicing Human protein_coding chr12:48528825 chr12:48528823 . 0.195 0 19 hm5C_associated_SNPs_22603 0 0 1 0 1 PFKM chr12:48528726 3'AG 48528726 Downstream 98bp
chr1 161179354 161179354 1 + C A GBM 161179358 + 161179338 161179378 41 CTTGGGGCCATGACCCCTTTCTTCTGGCTGTTTGAAGAAAG CTTGGGGCCATGACCCATTTCTTCTGGCTGTTTGAAGAAAG < 41bp 1 0.295782480171854 1 0.13319993019104 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161179358 chr1:161179354 nonsynonymous SNV 0.998 5 17 hm5C_associated_SNPs_22604 0 0 1 0 2 NDUFS2 chr1:161179273 3'AG 161179273 Downstream 82bp
chr1 161179354 161179354 1 + C A GBM 161179358 + 161179338 161179378 41 CTTGGGGCCATGACCCCTTTCTTCTGGCTGTTTGAAGAAAG CTTGGGGCCATGACCCATTTCTTCTGGCTGTTTGAAGAAAG < 41bp 1 0.295782480171854 1 0.13319993019104 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161179358 chr1:161179354 nonsynonymous SNV 0.998 5 17 hm5C_associated_SNPs_22604 0 0 1 0 2 NDUFS2 chr1:161179385 5'GT 161179385 Upstream 32bp
chr19 13063818 13063818 1 + C A GBM 13063834 + 13063814 13063854 41 AGAACTTGGCTGCCAACTTCCTCCTGAGTCAGAACTTTGAT AGAAATTGGCTGCCAACTTCCTCCTGAGTCAGAACTTTGAT < 41bp 1 0.510760307593144 1 0.837677419185638 experiment 0.978479384813712 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD23A ENSG00000179262 CDS Human protein_coding chr19:13063834 chr19:13063818 nonsynonymous SNV 0.999 3 5 hm5C_associated_SNPs_22605 0 0 1 0 1 RAD23A chr19:13063750 3'AG 13063750 Downstream 69bp
chr6 74502429 74502429 1 + A C GBM 74502417 + 74502397 74502437 41 TGCCTTATGGCTGTGGTGAACAGAACATGATAAATTTTGCT TGCCTTATGGCTGTGGTGAACAGAACATGATACATTTTGCT < 41bp 1 0.405644214919373 1 0.622949063777924 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD109 ENSG00000156535 CDS Human protein_coding chr6:74502417 chr6:74502429 nonsynonymous SNV 0.465 0 33 hm5C_associated_SNPs_22606 0 0 0 0 2 CD109 chr6:74502349 3'AG 74502349 Downstream 81bp
chr6 74502429 74502429 1 + A C GBM 74502417 + 74502397 74502437 41 TGCCTTATGGCTGTGGTGAACAGAACATGATAAATTTTGCT TGCCTTATGGCTGTGGTGAACAGAACATGATACATTTTGCT < 41bp 1 0.405644214919373 1 0.622949063777924 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD109 ENSG00000156535 CDS Human protein_coding chr6:74502417 chr6:74502429 nonsynonymous SNV 0.465 0 33 hm5C_associated_SNPs_22606 0 0 0 0 2 CD109 chr6:74502525 5'GT 74502525 Upstream 97bp
chr19 38780793 38780793 1 + C A GBM 38780801 + 38780781 38780821 41 CACTGGGCCTTGCCGTGCATCCTTCCCACGCTGGTACTTTG CACTGGGCCTTGACGTGCATCCTTCCCACGCTGGTACTTTG < 41bp 1 0.0126129282788349 1 0.0807620286941528 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPINT2 ENSG00000167642;ENSG00000267748 CDS Human other chr19:38780801 chr19:38780793 stopgain 0.780 1 13 hm5C_associated_SNPs_22608 0 0 1 0 1 SPINT2 chr19:38780759 3'AG 38780759 Downstream 35bp
chr2 10022847 10022847 1 + G A GBM 10022851 + 10022831 10022871 41 ACAGGTTTGTTGAAGAGGACCATATTCCTTACATAAATGCT ACAGGTTTGTTGAAGAAGACCATATTCCTTACATAAATGCT < 41bp 1 0.0541752487490136 1 0.126997977495193 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAF1B ENSG00000115750 CDS Human protein_coding chr2:10022851 chr2:10022847 nonsynonymous SNV . 0 17 hm5C_associated_SNPs_22609 0 0 1 0 2 TAF1B chr2:10022835 3'AG 10022835 Downstream 13bp
chr2 10022847 10022847 1 + G A GBM 10022851 + 10022831 10022871 41 ACAGGTTTGTTGAAGAGGACCATATTCCTTACATAAATGCT ACAGGTTTGTTGAAGAAGACCATATTCCTTACATAAATGCT < 41bp 1 0.0541752487490136 1 0.126997977495193 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAF1B ENSG00000115750 CDS Human protein_coding chr2:10022851 chr2:10022847 nonsynonymous SNV . 0 17 hm5C_associated_SNPs_22609 0 0 1 0 2 TAF1B chr2:10022934 5'GT 10022934 Upstream 88bp
chr11 210615 210615 1 + C A GBM 210603 + 210583 210623 41 CTTTACCGACACCTGGGGACCCTTCTCCGGCACTGTGTGAT CTTTACCGACACCTGGGGACCCTTCTCCGGCAATGTGTGAT < 41bp 1 0.0120282185506887 1 0.0652305781841278 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:210603 chr11:210615 nonsynonymous SNV 0.907 1 33 hm5C_associated_SNPs_22611 0 0 1 0 2 RIC8A chr11:210571 3'AG 210571 Downstream 45bp
chr11 210615 210615 1 + C A GBM 210603 + 210583 210623 41 CTTTACCGACACCTGGGGACCCTTCTCCGGCACTGTGTGAT CTTTACCGACACCTGGGGACCCTTCTCCGGCAATGTGTGAT < 41bp 1 0.0120282185506887 1 0.0652305781841278 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:210603 chr11:210615 nonsynonymous SNV 0.907 1 33 hm5C_associated_SNPs_22611 0 0 1 0 2 RIC8A chr11:210662 5'GT 210662 Upstream 48bp
chr11 121495965 121495965 1 + C T GBM 121495977 + 121495957 121495997 41 CCATCCTGCTGTACGATGAGCTGGGGTCTGGTGAGTTGCGA CCATCCTGTTGTACGATGAGCTGGGGTCTGGTGAGTTGCGA < 41bp 1 0.483715412867975 1 0.420775443315506 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SORL1 ENSG00000137642 CDS Human protein_coding chr11:121495977 chr11:121495965 synonymous SNV . 0 9 hm5C_associated_SNPs_22613 0 0 1 0 1 SORL1 chr11:121495986 5'GT 121495986 Upstream 22bp
chr16 3712025 3712025 1 - C T GBM 3712045 - 3712025 3712065 41 CCTGCGCATGCAGCAGCTGGCCAAGACCCAGGAGGAGCGCG CCTGCGCATGCAGCAGCTGGCCAAGACCCAGGAGGAGCGCA < 41bp 1 0.272973938436825 1 0.173111766576767 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712045 chr16:3712025 nonsynonymous SNV 0.755 1 41 hm5C_associated_SNPs_22614 0 0 1 0 1 TRAP1 chr16:3711988 5'GT 3711988 Upstream 38bp
chr19 1053474 1053474 1 + C T GBM 1053481 + 1053461 1053501 41 AGAGCTAGACACGCGGCTGGCGGAGCTGAGGCTCACTGGCT AGAGCTAGACACGTGGCTGGCGGAGCTGAGGCTCACTGGCT < 41bp 1 0.477470142536967 1 0.876803040504456 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1053481 chr19:1053474 nonsynonymous SNV 0.007 4 14 hm5C_associated_SNPs_22622 0 0 0 0 1 ABCA7 chr19:1053530 5'GT 1053530 Upstream 57bp
chr1 228495994 228495994 1 + C T GBM 228496008 + 228495988 228496028 41 CACACCCTGCGGCTGAAGGGCGTGACGCCCGAGGACGCTGG CACACCTTGCGGCTGAAGGGCGTGACGCCCGAGGACGCTGG < 41bp 1 0.100068018773817 1 0.603531539440155 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496008 chr1:228495994 synonymous SNV . 0 7 hm5C_associated_SNPs_22623 0 0 0 0 1 OBSCN chr1:228496084 5'GT 228496084 Upstream 91bp
chr17 41561526 41561526 1 + C T GBM 41561537 + 41561517 41561557 41 CTGGACAATCACTTGGGGATCAACGACAAGGACCTTGGTGA CTGGACAATTACTTGGGGATCAACGACAAGGACCTTGGTGA < 41bp 1 0.534189050952576 1 0.411558300256729 experiment 0.931621898094849 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41561537 chr17:41561526 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_22624 0 0 1 0 1 DHX8 chr17:41561553 5'GT 41561553 Upstream 28bp
chr19 12924237 12924237 1 + G A GBM 12924232 + 12924212 12924252 41 CAAGCCCGTCCCCGTTCTTCCCACCGATATTTCCTGGAACG CAAGCCCGTCCCCGTTCTTCCCACCAATATTTCCTGGAACG < 41bp 1 0.116369355896048 1 0.0832952558994293 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924232 chr19:12924237 nonsynonymous SNV 0.058 2 26 hm5C_associated_SNPs_22625 0 0 1 0 1 RNASEH2A chr19:12924142 3'AG 12924142 Downstream 96bp
chr19 12924237 12924237 1 + G A GBM 12924253 + 12924233 12924273 41 CACCGATATTTCCTGGAACGCGGCCTGGAGTCAGCAACCAG CACCAATATTTCCTGGAACGCGGCCTGGAGTCAGCAACCAG < 41bp 1 0.588049260301688 1 0.357743382453918 experiment 0.823901479396624 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924253 chr19:12924237 nonsynonymous SNV 0.058 2 5 hm5C_associated_SNPs_22626 0 0 1 0 1 RNASEH2A chr19:12924142 3'AG 12924142 Downstream 96bp
chr20 34832800 34832800 1 + C A GBM 34832788 + 34832768 34832808 41 TACCACCAGCTTGGTGAGATCCCCGCTGACTTCTTCGTAGA TACCACCAGCTTGGTGAGATCCCCGCTGACTTATTCGTAGA < 41bp 1 0.388953724840817 1 0.635536134243011 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control AAR2 ENSG00000131043 CDS Human protein_coding chr20:34832788 chr20:34832800 nonsynonymous SNV 0.996 3 33 hm5C_associated_SNPs_22627 0 0 1 0 1 AAR2 chr20:34832848 5'GT 34832848 Upstream 49bp
chr12 110032871 110032871 1 + C T GBM 110032880 + 110032860 110032900 41 CTGAATGCCCTCGGCGTGGGCCACGCCTCTCTGGACCAGCT CTGAATGCCCTTGGCGTGGGCCACGCCTCTCTGGACCAGCT < 41bp 1 0.160005014664271 1 0.116679489612579 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MVK ENSG00000110921 CDS Human protein_coding chr12:110032880 chr12:110032871 synonymous SNV . 0 12 hm5C_associated_SNPs_22628 1 0 1 0 1 MVK chr12:110032833 3'AG 110032833 Downstream 39bp
chr8 1791522 1791522 1 + C A GBM 1791535 + 1791515 1791555 41 GCAGGAGCTCCTTCCCTTAACAGAGCTGAGAGAGGCATCTG GCAGGAGATCCTTCCCTTAACAGAGCTGAGAGAGGCATCTG < 41bp 1 0.685290537169975 1 0.387626200914383 experiment 0.62941892566005 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1791535 chr8:1791522 nonsynonymous SNV 0.000 1 8 hm5C_associated_SNPs_22629 0 0 1 0 2 ARHGEF10 chr8:1791519 3'AG 1791519 Downstream 4bp
chr8 1791522 1791522 1 + C A GBM 1791535 + 1791515 1791555 41 GCAGGAGCTCCTTCCCTTAACAGAGCTGAGAGAGGCATCTG GCAGGAGATCCTTCCCTTAACAGAGCTGAGAGAGGCATCTG < 41bp 1 0.685290537169975 1 0.387626200914383 experiment 0.62941892566005 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1791535 chr8:1791522 nonsynonymous SNV 0.000 1 8 hm5C_associated_SNPs_22629 0 0 1 0 2 ARHGEF10 chr8:1791602 5'GT 1791602 Upstream 81bp
chr2 70164468 70164468 1 + G A GBM 70164486 + 70164466 70164506 41 AGGATCCGGATGGACAGCATCGGCTCCACCGTCTCCTCGGA AGAATCCGGATGGACAGCATCGGCTCCACCGTCTCCTCGGA < 41bp 1 0.758115171442552 1 0.35790342092514 experiment 0.483769657114896 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MXD1 ENSG00000059728 CDS Human protein_coding chr2:70164486 chr2:70164468 synonymous SNV . 0 3 hm5C_associated_SNPs_22630 0 0 1 0 1 MXD1 chr2:70164526 5'GT 70164526 Upstream 59bp
chr10 70968397 70968397 1 + G A GBM 70968402 + 70968382 70968422 41 ATGCCAGCCTTATTCGAGATCTCCAGAAAGAACTAGATGGT ATGCCAGCCTTATTCAAGATCTCCAGAAAGAACTAGATGGT < 41bp 1 0.758263998135816 1 0.900284349918365 experiment 0.483472003728367 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SUPV3L1 ENSG00000156502 CDS Human protein_coding chr10:70968402 chr10:70968397 nonsynonymous SNV 0.902 3 16 hm5C_associated_SNPs_22631 0 0 1 0 1 SUPV3L1 chr10:70968356 3'AG 70968356 Downstream 42bp
chr3 169953103 169953103 1 + G A GBM 169953106 + 169953086 169953126 41 TGTGTTCTTTTGACAACGAACAGCTCTTCACCATGAAATGG TGTGTTCTTTTGACAACAAACAGCTCTTCACCATGAAATGG < 41bp 1 0.547287000129407 1 0.245655387639999 experiment 0.905425999741187 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:169953106 chr3:169953103 nonsynonymous SNV 0.655 1 18 hm5C_associated_SNPs_22632 0 0 1 0 2 PRKCI chr3:169953018 3'AG 169953018 Downstream 86bp
chr3 169953103 169953103 1 + G A GBM 169953106 + 169953086 169953126 41 TGTGTTCTTTTGACAACGAACAGCTCTTCACCATGAAATGG TGTGTTCTTTTGACAACAAACAGCTCTTCACCATGAAATGG < 41bp 1 0.547287000129407 1 0.245655387639999 experiment 0.905425999741187 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:169953106 chr3:169953103 nonsynonymous SNV 0.655 1 18 hm5C_associated_SNPs_22632 0 0 1 0 2 PRKCI chr3:169953139 5'GT 169953139 Upstream 37bp
chr7 129939210 129939210 1 + G A GBM 129939222 + 129939202 129939242 41 ATCCCAGGGCTTAGAGTACGCAGTGACAATTGAGGACCTGC ATCCCAGGACTTAGAGTACGCAGTGACAATTGAGGACCTGC < 41bp 1 0.476577648777482 1 0.283393114805222 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129939222 chr7:129939210 nonsynonymous SNV 0.571 1 9 hm5C_associated_SNPs_22633 0 0 0 0 1 CPA4 chr7:129939244 5'GT 129939244 Upstream 35bp
chr7 43591831 43591831 1 + C T GBM 43591843 + 43591823 43591863 41 TGTAGACTCGAGGCTGGTGTCCGTGTTTGATGCCAGGGAGC TGTAGACTTGAGGCTGGTGTCCGTGTTTGATGCCAGGGAGC < 41bp 1 0.181433776265969 1 0.321035623550415 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43591843 chr7:43591831 nonsynonymous SNV 0.964 2 9 hm5C_associated_SNPs_22634 0 0 0 0 1 HECW1 chr7:43591821 3'AG 43591821 Downstream 11bp
chr3 41275099 41275099 1 + G A GBM 41275104 + 41275084 41275124 41 TCACCTGTGCAGCTGGAATTCTTTCTAACCTCACTTGCAAT TCACCTGTGCAGCTGAAATTCTTTCTAACCTCACTTGCAAT < 41bp 1 0.100570993778169 1 0.228108555078506 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41275104 chr3:41275099 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_22635 0 0 1 0 1 CTNNB1 chr3:41275020 3'AG 41275020 Downstream 80bp
chr11 44193288 44193288 1 + C A GBM 44193285 + 44193265 44193305 41 TGAAGAATGGAATGACCCTCCTGCTGTGGTAAGTGAATTCC TGAAGAATGGAATGACCCTCCTGATGTGGTAAGTGAATTCC < 41bp 1 0.482027194524968 1 0.235567897558212 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44193285 chr11:44193288 nonsynonymous SNV 0.900 1 24 hm5C_associated_SNPs_22636 0 0 1 0 2 EXT2 chr11:44193224 3'AG 44193224 Downstream 65bp
chr11 44193288 44193288 1 + C A GBM 44193285 + 44193265 44193305 41 TGAAGAATGGAATGACCCTCCTGCTGTGGTAAGTGAATTCC TGAAGAATGGAATGACCCTCCTGATGTGGTAAGTGAATTCC < 41bp 1 0.482027194524968 1 0.235567897558212 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44193285 chr11:44193288 nonsynonymous SNV 0.900 1 24 hm5C_associated_SNPs_22636 0 0 1 0 2 EXT2 chr11:44193292 5'GT 44193292 Upstream 5bp
chrX 135067833 135067833 1 + G A GBM 135067817 + 135067797 135067837 41 GGCGGCGGAGAGGCTAGAGCCATGGACGAGGAGATCGTGTC GGCGGCGGAGAGGCTAGAGCCATGGACGAGGAGATCATGTC < 41bp 1 0.697803409668467 1 0.760688066482544 experiment 0.604393180663066 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135067817 chrX:135067833 nonsynonymous SNV 0.997 0 37 hm5C_associated_SNPs_22638 0 0 1 0 1 SLC9A6 chrX:135067762 3'AG 135067762 Downstream 72bp
chr15 89849322 89849322 1 + T A GBM 89849336 + 89849316 89849356 41 CATTTTTCCACGAGCTGGTGCAGACAGCTCTGCCATCAGGC CATTTTACCACGAGCTGGTGCAGACAGCTCTGCCATCAGGC < 41bp 1 0.146748229493496 1 0.326030164957047 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FANCI ENSG00000140525 CDS Human protein_coding chr15:89849336 chr15:89849322 nonsynonymous SNV 0.996 2 7 hm5C_associated_SNPs_22639 0 0 1 0 2 FANCI chr15:89849238 3'AG 89849238 Downstream 85bp
chr15 89849322 89849322 1 + T A GBM 89849336 + 89849316 89849356 41 CATTTTTCCACGAGCTGGTGCAGACAGCTCTGCCATCAGGC CATTTTACCACGAGCTGGTGCAGACAGCTCTGCCATCAGGC < 41bp 1 0.146748229493496 1 0.326030164957047 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FANCI ENSG00000140525 CDS Human protein_coding chr15:89849336 chr15:89849322 nonsynonymous SNV 0.996 2 7 hm5C_associated_SNPs_22639 0 0 1 0 2 FANCI chr15:89849241 3'AG 89849241 Downstream 82bp
chr9 6498120 6498120 1 + G T GBM 6498113 + 6498093 6498133 41 GTTGAACCTGCTCCTTGGACCTCTGAAGGAATAGAACGGTC GTTGAACCTGCTCCTTGGACCTCTGAATGAATAGAACGGTC < 41bp 1 0.359780840096876 1 0.0962094068527222 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UHRF2 ENSG00000147854 CDS Human protein_coding chr9:6498113 chr9:6498120 stopgain 1.000 1 28 hm5C_associated_SNPs_22640 0 0 1 0 1 UHRF2 chr9:6498158 5'GT 6498158 Upstream 39bp
chr9 6498120 6498120 1 + G T GBM 6498115 + 6498095 6498135 41 TGAACCTGCTCCTTGGACCTCTGAAGGAATAGAACGGTCAA TGAACCTGCTCCTTGGACCTCTGAATGAATAGAACGGTCAA < 41bp 1 0.688012904126492 1 0.772886276245117 experiment 0.623974191747017 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UHRF2 ENSG00000147854 CDS Human protein_coding chr9:6498115 chr9:6498120 stopgain 1.000 1 26 hm5C_associated_SNPs_22641 0 0 1 0 1 UHRF2 chr9:6498158 5'GT 6498158 Upstream 39bp
chr10 93600321 93600321 1 + C A GBM 93600328 + 93600308 93600348 41 TGTCCTTCAGAAACTGTGTACTGTTCAGAGTGTCAACTGCA TGTCCTTCAGAAAATGTGTACTGTTCAGAGTGTCAACTGCA < 41bp 1 0.0706214796620734 1 0.0288072824478149 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TNKS2 ENSG00000107854 CDS Human protein_coding chr10:93600328 chr10:93600321 nonsynonymous SNV 0.998 1 14 hm5C_associated_SNPs_22642 0 0 1 0 1 TNKS2 chr10:93600318 3'AG 93600318 Downstream 4bp
chr7 135333182 135333182 1 + G T GBM 135333200 + 135333180 135333220 41 GAGAATCACTACAAAAGAAACTTCTGGACATTGAAGGATTA GATAATCACTACAAAAGAAACTTCTGGACATTGAAGGATTA < 41bp 1 0.0759965632164197 1 0.181997925043106 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135333200 chr7:135333182 stopgain 1.000 1 3 hm5C_associated_SNPs_22643 0 0 1 1 1 NUP205 chr7:135333152 3'AG 135333152 Downstream 31bp
chrX 2641360 2641360 1 + G T GBM 2641365 + 2641345 2641385 41 TGTCTTGCAGGAAAAGGAGGCAGTGATGGTGGAGGCAGCCA TGTCTTGCAGGAAAATGAGGCAGTGATGGTGGAGGCAGCCA < 41bp 1 0.32168110425359 1 0.451893866062164 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD99 ENSG00000002586 CDS Human protein_coding chrX:2641365 chrX:2641360 stopgain 0.002 0 16 hm5C_associated_SNPs_22646 0 0 1 0 1 CD99 chrX:2641355 3'AG 2641355 Downstream 6bp
chrX 2641360 2641360 1 + G T GBM 2641380 + 2641360 2641400 41 GGAGGCAGTGATGGTGGAGGCAGCCACAGGAAAGAAGGGGA TGAGGCAGTGATGGTGGAGGCAGCCACAGGAAAGAAGGGGA < 41bp 1 0.334543927290002 1 0.54912132024765 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD99 ENSG00000002586 CDS Human protein_coding chrX:2641380 chrX:2641360 stopgain 0.002 0 1 hm5C_associated_SNPs_22647 0 0 1 0 1 CD99 chrX:2641355 3'AG 2641355 Downstream 6bp
chr20 37632428 37632428 1 + C A GBM 37632421 + 37632401 37632441 41 GAAACTGTTGTGTCGATGCTCATCGAGCAGGCTCGAGCACT GAAACTGTTGTGTCGATGCTCATCGAGAAGGCTCGAGCACT < 41bp 1 0.330100512679031 1 0.0897463858127594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX35 ENSG00000101452 CDS Human protein_coding chr20:37632421 chr20:37632428 nonsynonymous SNV 0.896 1 28 hm5C_associated_SNPs_22648 0 0 1 0 1 DHX35 chr20:37632392 3'AG 37632392 Downstream 37bp
chr2 192141643 192141643 1 + A T GBM 192141649 + 192141629 192141669 41 AAATGGAGGTGAAAACCTCACTTCTGGACAATATGATTGGA AAATGGAGGTGAAATCCTCACTTCTGGACAATATGATTGGA < 41bp 1 0.215198385555562 1 0.26721778512001 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MYO1B ENSG00000128641 CDS Human protein_coding chr2:192141649 chr2:192141643 nonsynonymous SNV 0.920 0 15 hm5C_associated_SNPs_22649 0 0 1 0 1 MYO1B chr2:192141613 3'AG 192141613 Downstream 31bp
chr11 65402835 65402835 1 + G A GBM 65402834 + 65402814 65402854 41 CAACACGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATG CAACACGCCCTCCCTGCTGGCACTGCGCCATGTCCTGGATG < 41bp 1 0.0879763060239635 1 0.0304461419582367 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402834 chr11:65402835 synonymous SNV . 0 22 hm5C_associated_SNPs_22652 0 0 1 0 1 PCNX3 chr11:65402919 5'GT 65402919 Upstream 85bp
chr11 65402835 65402835 1 + G A GBM 65402836 + 65402816 65402856 41 ACACGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGAT ACACGCCCTCCCTGCTGGCACTGCGCCATGTCCTGGATGAT < 41bp 1 0.161472167727477 1 0.245578765869141 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402836 chr11:65402835 synonymous SNV . 0 20 hm5C_associated_SNPs_22653 0 0 1 0 1 PCNX3 chr11:65402919 5'GT 65402919 Upstream 85bp
chr11 65402835 65402835 1 + G A GBM 65402839 + 65402819 65402859 41 CGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCC CGCCCTCCCTGCTGGCACTGCGCCATGTCCTGGATGATGCC < 41bp 1 0.312817056104366 1 0.922525763511658 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402839 chr11:65402835 synonymous SNV . 0 17 hm5C_associated_SNPs_22654 0 0 1 0 1 PCNX3 chr11:65402919 5'GT 65402919 Upstream 85bp
chr11 65402835 65402835 1 + G A GBM 65402841 + 65402821 65402861 41 CCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCCTC CCCTCCCTGCTGGCACTGCGCCATGTCCTGGATGATGCCTC < 41bp 1 0.065248134491904 1 0.108941733837128 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402841 chr11:65402835 synonymous SNV . 0 15 hm5C_associated_SNPs_22655 0 0 1 0 1 PCNX3 chr11:65402919 5'GT 65402919 Upstream 85bp
chr11 65402835 65402835 1 + G A GBM 65402842 + 65402822 65402862 41 CCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCCTCC CCTCCCTGCTGGCACTGCGCCATGTCCTGGATGATGCCTCC < 41bp 1 0.0703737984774781 1 0.403270244598389 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402842 chr11:65402835 synonymous SNV . 0 14 hm5C_associated_SNPs_22656 0 0 1 0 1 PCNX3 chr11:65402919 5'GT 65402919 Upstream 85bp
chr14 23239044 23239044 1 + G A GBM 23239030 + 23239010 23239050 41 TGCCCGCTGCCTGATTTTTCCTCTCATCGTGACGGGCCAGC TGCCCGCTGCCTGATTTTTCCTCTCATCGTGACGAGCCAGC < 41bp 1 0.27086887381643 1 0.0369770228862762 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXA1L ENSG00000155463 CDS Human protein_coding chr14:23239030 chr14:23239044 nonsynonymous SNV 0.994 3 35 hm5C_associated_SNPs_22657 0 0 1 0 1 OXA1L chr14:23239000 3'AG 23239000 Downstream 45bp
chr11 65561705 65561705 1 + C T GBM 65561686 + 65561666 65561706 41 CACTTGACAGACCCCCAGAGCAGAGACCATGGCTTCCTGCG CACTTGACAGACCCCCAGAGCAGAGACCATGGCTTCCTGTG < 41bp 1 0.483294131884482 1 0.551103413105011 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient OVOL1 ENSG00000172818 CDS Human protein_coding chr11:65561686 chr11:65561705 nonsynonymous SNV 0.999 1 40 hm5C_associated_SNPs_22658 0 0 0 0 1 OVOL1 chr11:65561719 5'GT 65561719 Upstream 15bp
chrX 69519003 69519003 1 + G A GBM 69519014 + 69518994 69519034 41 GCCCATCTCGTGAGAAAGCTCAAATAAATATACGAGAGGAT GCCCATCTCATGAGAAAGCTCAAATAAATATACGAGAGGAT < 41bp 1 0.124845844573048 1 0.260612726211548 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69519014 chrX:69519003 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_22661 0 0 0 0 2 KIF4A chrX:69518963 3'AG 69518963 Downstream 41bp
chrX 69519003 69519003 1 + G A GBM 69519014 + 69518994 69519034 41 GCCCATCTCGTGAGAAAGCTCAAATAAATATACGAGAGGAT GCCCATCTCATGAGAAAGCTCAAATAAATATACGAGAGGAT < 41bp 1 0.124845844573048 1 0.260612726211548 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69519014 chrX:69519003 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_22661 0 0 0 0 2 KIF4A chrX:69519052 5'GT 69519052 Upstream 50bp
chr2 38908538 38908538 1 + C T GBM 38908545 + 38908525 38908565 41 ACACCCTGGATGGCGGAGAGCTCATAGTCAACTACAGAGCA ACACCCTGGATGGTGGAGAGCTCATAGTCAACTACAGAGCA < 41bp 1 0.307888666524754 1 0.0449953377246857 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GALM ENSG00000143891 CDS Human protein_coding chr2:38908545 chr2:38908538 synonymous SNV . 0 14 hm5C_associated_SNPs_22663 0 0 0 0 1 GALM chr2:38908628 5'GT 38908628 Upstream 91bp
chr11 113126681 113126681 1 + C T GBM 113126689 + 113126669 113126709 41 CAAGCAGGATGACGGCGGCTCCCCCATCAGACACTATCTGG CAAGCAGGATGATGGCGGCTCCCCCATCAGACACTATCTGG < 41bp 1 0.086093723272323 1 0.0662932693958282 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113126689 chr11:113126681 synonymous SNV . 0 13 hm5C_associated_SNPs_22664 0 0 0 0 1 NCAM1 chr11:113126723 5'GT 113126723 Upstream 43bp
chr6 42974763 42974763 1 + G A GBM 42974749 + 42974729 42974769 41 CCACTCAGTGACCTCAAATTCAAGGAGGTGAAGCGGGCAGG CCACTCAGTGACCTCAAATTCAAGGAGGTGAAGCAGGCAGG < 41bp 1 0.751098829485175 1 0.784631133079529 experiment 0.497802341029649 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974749 chr6:42974763 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_22665 0 0 1 0 2 PPP2R5D chr6:42974672 3'AG 42974672 Downstream 92bp
chr6 42974763 42974763 1 + G A GBM 42974749 + 42974729 42974769 41 CCACTCAGTGACCTCAAATTCAAGGAGGTGAAGCGGGCAGG CCACTCAGTGACCTCAAATTCAAGGAGGTGAAGCAGGCAGG < 41bp 1 0.751098829485175 1 0.784631133079529 experiment 0.497802341029649 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974749 chr6:42974763 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_22665 0 0 1 0 2 PPP2R5D chr6:42974848 5'GT 42974848 Upstream 86bp
chr6 42974763 42974763 1 + G A GBM 42974762 + 42974742 42974782 41 TCAAATTCAAGGAGGTGAAGCGGGCAGGACTCAACGAGATG TCAAATTCAAGGAGGTGAAGCAGGCAGGACTCAACGAGATG < 41bp 1 0.540050473667842 1 0.446137964725494 experiment 0.919899052664317 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974762 chr6:42974763 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_22666 0 0 1 0 2 PPP2R5D chr6:42974672 3'AG 42974672 Downstream 92bp
chr6 42974763 42974763 1 + G A GBM 42974762 + 42974742 42974782 41 TCAAATTCAAGGAGGTGAAGCGGGCAGGACTCAACGAGATG TCAAATTCAAGGAGGTGAAGCAGGCAGGACTCAACGAGATG < 41bp 1 0.540050473667842 1 0.446137964725494 experiment 0.919899052664317 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974762 chr6:42974763 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_22666 0 0 1 0 2 PPP2R5D chr6:42974848 5'GT 42974848 Upstream 86bp
chr6 42974763 42974763 1 + G A GBM 42974771 + 42974751 42974791 41 AGGAGGTGAAGCGGGCAGGACTCAACGAGATGGTGGAGTAC AGGAGGTGAAGCAGGCAGGACTCAACGAGATGGTGGAGTAC < 41bp 1 0.584317655248648 1 0.796674728393555 experiment 0.831364689502704 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974771 chr6:42974763 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_22667 0 0 1 0 2 PPP2R5D chr6:42974672 3'AG 42974672 Downstream 92bp
chr6 42974763 42974763 1 + G A GBM 42974771 + 42974751 42974791 41 AGGAGGTGAAGCGGGCAGGACTCAACGAGATGGTGGAGTAC AGGAGGTGAAGCAGGCAGGACTCAACGAGATGGTGGAGTAC < 41bp 1 0.584317655248648 1 0.796674728393555 experiment 0.831364689502704 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974771 chr6:42974763 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_22667 0 0 1 0 2 PPP2R5D chr6:42974848 5'GT 42974848 Upstream 86bp
chr11 988608 988608 1 + C T GBM 988594 + 988574 988614 41 GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGCGACCGC GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGTGACCGC < 41bp 1 0.710230516823358 1 0.465513527393341 experiment 0.579538966353283 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:988594 chr11:988608 synonymous SNV . 0 35 hm5C_associated_SNPs_22668 0 0 1 0 2 AP2A2 chr11:988552 3'AG 988552 Downstream 57bp
chr11 988608 988608 1 + C T GBM 988594 + 988574 988614 41 GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGCGACCGC GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGTGACCGC < 41bp 1 0.710230516823358 1 0.465513527393341 experiment 0.579538966353283 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:988594 chr11:988608 synonymous SNV . 0 35 hm5C_associated_SNPs_22668 0 0 1 0 2 AP2A2 chr11:988689 5'GT 988689 Upstream 82bp
chr12 104336876 104336876 1 + C T GBM 104336862 + 104336842 104336882 41 AATTTTGTAGGCTGAATCTTCTCCATTTGTTGAGCGACTTC AATTTTGTAGGCTGAATCTTCTCCATTTGTTGAGTGACTTC < 41bp 1 0.75868157749118 1 0.933836460113525 experiment 0.482636845017639 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104336862 chr12:104336876 stopgain 1.000 1 35 hm5C_associated_SNPs_22669 0 0 1 0 1 HSP90B1 chr12:104336852 3'AG 104336852 Downstream 25bp
chr19 42796588 42796588 1 + G A GBM 42796582 + 42796562 42796602 41 TAGGCTTCACCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTG TAGGCTTCACCTCGCTGGGGCCCAGCAGCCCCGCCTTCGTG < 41bp 1 0.0564389288425103 1 0.0940048396587372 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796582 chr19:42796588 nonsynonymous SNV 0.919 4 27 hm5C_associated_SNPs_22670 0 0 0 0 1 CIC chr19:42796618 5'GT 42796618 Upstream 31bp
chr19 42796588 42796588 1 + G A GBM 42796583 + 42796563 42796603 41 AGGCTTCACCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGC AGGCTTCACCTCGCTGGGGCCCAGCAGCCCCGCCTTCGTGC < 41bp 1 0.123376450697542 1 0.209338039159775 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796583 chr19:42796588 nonsynonymous SNV 0.919 4 26 hm5C_associated_SNPs_22671 0 0 0 0 1 CIC chr19:42796618 5'GT 42796618 Upstream 31bp
chr19 42796588 42796588 1 + G A GBM 42796590 + 42796570 42796610 41 ACCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCT ACCTCGCTGGGGCCCAGCAGCCCCGCCTTCGTGCAGCCCCT < 41bp 1 0.218026878298868 1 0.237317442893982 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796590 chr19:42796588 nonsynonymous SNV 0.919 4 19 hm5C_associated_SNPs_22672 0 0 0 0 1 CIC chr19:42796618 5'GT 42796618 Upstream 31bp
chr19 42796588 42796588 1 + G A GBM 42796591 + 42796571 42796611 41 CCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCTG CCTCGCTGGGGCCCAGCAGCCCCGCCTTCGTGCAGCCCCTG < 41bp 1 0.27325882251123 1 0.122922658920288 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796591 chr19:42796588 nonsynonymous SNV 0.919 4 18 hm5C_associated_SNPs_22673 0 0 0 0 1 CIC chr19:42796618 5'GT 42796618 Upstream 31bp
chr19 42796588 42796588 1 + G A GBM 42796592 + 42796572 42796612 41 CTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCTGC CTCGCTGGGGCCCAGCAGCCCCGCCTTCGTGCAGCCCCTGC < 41bp 1 0.186184378330938 1 0.106479585170746 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796592 chr19:42796588 nonsynonymous SNV 0.919 4 17 hm5C_associated_SNPs_22674 0 0 0 0 1 CIC chr19:42796618 5'GT 42796618 Upstream 31bp
chr19 42796588 42796588 1 + G A GBM 42796593 + 42796573 42796613 41 TCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCTGCT TCGCTGGGGCCCAGCAGCCCCGCCTTCGTGCAGCCCCTGCT < 41bp 1 0.329896349842237 1 0.3144411444664 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796593 chr19:42796588 nonsynonymous SNV 0.919 4 16 hm5C_associated_SNPs_22675 0 0 0 0 1 CIC chr19:42796618 5'GT 42796618 Upstream 31bp
chr3 8607236 8607236 1 + C T GBM 8607252 + 8607232 8607272 41 GAGCCGCTGGTGGACCTCATCTACTTCTGGAAGGATGGTGC GAGCTGCTGGTGGACCTCATCTACTTCTGGAAGGATGGTGC < 41bp 1 0.576190949425166 1 0.679127156734467 experiment 0.847618101149667 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LMCD1 ENSG00000071282 CDS Human protein_coding chr3:8607252 chr3:8607236 nonsynonymous SNV 0.975 3 5 hm5C_associated_SNPs_22677 0 0 0 0 1 LMCD1 chr3:8607333 5'GT 8607333 Upstream 98bp
chr19 39944053 39944053 1 + G A GBM 39944044 + 39944024 39944064 41 GCAGTGAGAAAGAAGAAGAGCCTGAGGACGAAGAGGAGGAG GCAGTGAGAAAGAAGAAGAGCCTGAGGACAAAGAGGAGGAG < 41bp 1 0.30581904235062 1 0.14451140165329 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944044 chr19:39944053 nonsynonymous SNV 0.976 2 30 hm5C_associated_SNPs_22678 0 0 1 0 1 SUPT5H chr19:39943996 3'AG 39943996 Downstream 58bp
chr3 124160808 124160808 1 + G A GBM 124160800 + 124160780 124160820 41 TGTCTTTCGCAGGCCTGCACCCTGGCTCGGCGGAATGCTGA TGTCTTTCGCAGGCCTGCACCCTGGCTCAGCGGAATGCTGA < 41bp 1 0.105319015147625 1 0.356142401695251 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient KALRN ENSG00000160145 CDS Human protein_coding chr3:124160800 chr3:124160808 nonsynonymous SNV 0.747 3 29 hm5C_associated_SNPs_22679 0 0 0 0 2 KALRN chr3:124160792 3'AG 124160792 Downstream 17bp
chr3 124160808 124160808 1 + G A GBM 124160800 + 124160780 124160820 41 TGTCTTTCGCAGGCCTGCACCCTGGCTCGGCGGAATGCTGA TGTCTTTCGCAGGCCTGCACCCTGGCTCAGCGGAATGCTGA < 41bp 1 0.105319015147625 1 0.356142401695251 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient KALRN ENSG00000160145 CDS Human protein_coding chr3:124160800 chr3:124160808 nonsynonymous SNV 0.747 3 29 hm5C_associated_SNPs_22679 0 0 0 0 2 KALRN chr3:124160906 5'GT 124160906 Upstream 99bp
chrX 47102865 47102865 1 + C T GBM 47102871 + 47102851 47102891 41 TTCCTGTCTACCTGCGGGAGCGCACCCCTGCCCGTGACTAC TTCCTGTCTACCTGTGGGAGCGCACCCCTGCCCGTGACTAC < 41bp 1 0.139415954579793 1 0.144634395837784 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47102871 chrX:47102865 nonsynonymous SNV 0.998 4 15 hm5C_associated_SNPs_22680 0 0 1 0 1 USP11 chrX:47102795 3'AG 47102795 Downstream 71bp
chr19 39944022 39944022 1 + G A GBM 39944021 + 39944001 39944041 41 CGAAGAGCGGCGGAGTGCAGCGGGCAGTGAGAAAGAAGAAG CGAAGAGCGGCGGAGTGCAGCAGGCAGTGAGAAAGAAGAAG < 41bp 1 0.57748492933296 1 0.806784451007843 experiment 0.84503014133408 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944021 chr19:39944022 synonymous SNV . 0 22 hm5C_associated_SNPs_22682 0 0 1 0 1 SUPT5H chr19:39943996 3'AG 39943996 Downstream 27bp
chr19 39944022 39944022 1 + G A GBM 39944025 + 39944005 39944045 41 GAGCGGCGGAGTGCAGCGGGCAGTGAGAAAGAAGAAGAGCC GAGCGGCGGAGTGCAGCAGGCAGTGAGAAAGAAGAAGAGCC < 41bp 1 0.445755155830932 1 0.612486600875854 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944025 chr19:39944022 synonymous SNV . 0 18 hm5C_associated_SNPs_22683 0 0 1 0 1 SUPT5H chr19:39943996 3'AG 39943996 Downstream 27bp
chr1 117638845 117638845 1 + C T GBM 117638864 + 117638844 117638884 41 GCCACCATCGATGGCTCTGTCAATCCCAAGCAGAGAATGGA GTCACCATCGATGGCTCTGTCAATCCCAAGCAGAGAATGGA < 41bp 1 0.119947459019403 1 0.370049595832825 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117638864 chr1:117638845 nonsynonymous SNV 0.998 1 2 hm5C_associated_SNPs_22684 0 0 1 0 1 TTF2 chr1:117638921 5'GT 117638921 Upstream 77bp
chr1 46871972 46871972 1 + C T GBM 46871992 + 46871972 46872012 41 CGAGCCCTGCTGTGTGAGGACATGTTCCGCTTGGACCCCAC TGAGCCCTGCTGTGTGAGGACATGTTCCGCTTGGACCCCAC < 41bp 1 0.399555521263078 1 0.0904349386692047 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAH ENSG00000117480 CDS Human protein_coding chr1:46871992 chr1:46871972 stopgain 0.670 0 1 hm5C_associated_SNPs_22685 0 0 0 0 2 FAAH chr1:46871916 3'AG 46871916 Downstream 57bp
chr1 46871972 46871972 1 + C T GBM 46871992 + 46871972 46872012 41 CGAGCCCTGCTGTGTGAGGACATGTTCCGCTTGGACCCCAC TGAGCCCTGCTGTGTGAGGACATGTTCCGCTTGGACCCCAC < 41bp 1 0.399555521263078 1 0.0904349386692047 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAH ENSG00000117480 CDS Human protein_coding chr1:46871992 chr1:46871972 stopgain 0.670 0 1 hm5C_associated_SNPs_22685 0 0 0 0 2 FAAH chr1:46872040 5'GT 46872040 Upstream 69bp
chr11 45923593 45923593 1 + A T GBM 45923602 + 45923582 45923622 41 GTGTCTCGATCATCCTCACCCCTGAAGACAGGTAAGTCAGG GTGTCTCGATCTTCCTCACCCCTGAAGACAGGTAAGTCAGG < 41bp 1 0.11873340449785 1 0.247918605804443 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923602 chr11:45923593 synonymous SNV . 0 12 hm5C_associated_SNPs_22686 0 0 0 0 2 MAPK8IP1 chr11:45923531 3'AG 45923531 Downstream 63bp
chr11 45923593 45923593 1 + A T GBM 45923602 + 45923582 45923622 41 GTGTCTCGATCATCCTCACCCCTGAAGACAGGTAAGTCAGG GTGTCTCGATCTTCCTCACCCCTGAAGACAGGTAAGTCAGG < 41bp 1 0.11873340449785 1 0.247918605804443 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923602 chr11:45923593 synonymous SNV . 0 12 hm5C_associated_SNPs_22686 0 0 0 0 2 MAPK8IP1 chr11:45923612 5'GT 45923612 Upstream 20bp
chr15 41554976 41554976 1 + G A GBM 41554985 + 41554965 41555005 41 TAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCGC TAAACTTCCGTAGATTCATGCGAACTTTGGCTCATTTCCGC < 41bp 1 0.211711661700155 1 0.186836272478104 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHP1 ENSG00000187446 CDS Human protein_coding chr15:41554985 chr15:41554976 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_22692 0 0 1 0 1 CHP1 chr15:41554954 3'AG 41554954 Downstream 23bp
chr19 10886491 10886491 1 + G A GBM 10886497 + 10886477 10886517 41 CAGTTCATCAGCCGGGAGAGCAGCCTCATTCTGGCTGTCAC CAGTTCATCAGCCGAGAGAGCAGCCTCATTCTGGCTGTCAC < 41bp 1 0.216349751467003 1 0.122377097606659 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10886497 chr19:10886491 synonymous SNV . 0 15 hm5C_associated_SNPs_22693 0 0 1 1 1 DNM2 chr19:10886582 5'GT 10886582 Upstream 92bp
chr9 116750662 116750662 1 + G A GBM 116750645 + 116750625 116750665 41 GAGCACCAAGGTGGAGGGCCCAGAGCCAGTGCCAGCCGAGG GAGCACCAAGGTGGAGGGCCCAGAGCCAGTGCCAGCCAAGG < 41bp 1 0.39055903579006 1 0.397984981536865 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116750645 chr9:116750662 nonsynonymous SNV 0.785 0 38 hm5C_associated_SNPs_22694 0 0 1 0 1 ZNF618 chr9:116750601 3'AG 116750601 Downstream 62bp
chr19 34868415 34868415 1 + G A GBM 34868408 + 34868388 34868428 41 CATCTTCGCCCCTGTGCCAGCGTGTCCGGAGCGGTGACTGG CATCTTCGCCCCTGTGCCAGCGTGTCCAGAGCGGTGACTGG < 41bp 1 0.218274852404006 1 0.591677308082581 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868408 chr19:34868415 nonsynonymous SNV 0.986 4 28 hm5C_associated_SNPs_22696 0 0 1 0 1 GPI chr19:34868491 5'GT 34868491 Upstream 77bp
chr19 34868415 34868415 1 + G A GBM 34868413 + 34868393 34868433 41 TCGCCCCTGTGCCAGCGTGTCCGGAGCGGTGACTGGAAGGG TCGCCCCTGTGCCAGCGTGTCCAGAGCGGTGACTGGAAGGG < 41bp 1 0.568260970176269 1 0.407204896211624 experiment 0.863478059647462 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868413 chr19:34868415 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_22697 0 0 1 0 1 GPI chr19:34868491 5'GT 34868491 Upstream 77bp
chr6 30857024 30857024 1 + G A GBM 30857005 + 30856985 30857025 41 GAGCAGTGACGGGGATGGGGCCTGGTGCCCCGCAGGGTCGG GAGCAGTGACGGGGATGGGGCCTGGTGCCCCGCAGGGTCAG < 41bp 1 0.298583534708145 1 0.310500621795654 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDR1 ENSG00000204580 CDS Human protein_coding chr6:30857005 chr6:30857024 synonymous SNV . 0 40 hm5C_associated_SNPs_22698 0 0 1 0 1 DDR1 chr6:30856979 3'AG 30856979 Downstream 46bp
chr2 242431066 242431066 1 + C A GBM 242431077 + 242431057 242431097 41 CCAGCGTGTCCAGGGCAGACCACAGTGCAGCTGTCGAGGTA CCAGCGTGTACAGGGCAGACCACAGTGCAGCTGTCGAGGTA < 41bp 1 0.574516597496385 1 0.190668076276779 experiment 0.85096680500723 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FARP2 ENSG00000006607 CDS Human protein_coding chr2:242431077 chr2:242431066 nonsynonymous SNV 0.984 4 10 hm5C_associated_SNPs_22699 0 0 1 0 1 FARP2 chr2:242431094 5'GT 242431094 Upstream 29bp
chr17 7401132 7401132 1 + G A GBM 7401133 + 7401113 7401153 41 GACCAGGTTGGCGTGCCCCGCTCCATTGCTGCCAACATGAC GACCAGGTTGGCGTGCCCCACTCCATTGCTGCCAACATGAC < 41bp 1 0.760712267677142 1 0.937876224517822 experiment 0.478575464645715 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR2A ENSG00000181222 CDS Human protein_coding chr17:7401133 chr17:7401132 nonsynonymous SNV 0.998 3 20 hm5C_associated_SNPs_22701 0 0 1 0 1 POLR2A chr17:7401189 5'GT 7401189 Upstream 58bp
chr9 130549815 130549815 1 + C T GBM 130549823 + 130549803 130549843 41 ATTACAGCCTTGCGGGAGATCAAGATCCTTCAGCTTCTAAA ATTACAGCCTTGTGGGAGATCAAGATCCTTCAGCTTCTAAA < 41bp 1 0.781672496816087 1 0.693881273269653 experiment 0.436655006367827 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK9 ENSG00000136807 CDS Human protein_coding chr9:130549823 chr9:130549815 nonsynonymous SNV 0.999 4 13 hm5C_associated_SNPs_22702 0 0 1 0 2 CDK9 chr9:130549797 3'AG 130549797 Downstream 19bp
chr9 130549815 130549815 1 + C T GBM 130549823 + 130549803 130549843 41 ATTACAGCCTTGCGGGAGATCAAGATCCTTCAGCTTCTAAA ATTACAGCCTTGTGGGAGATCAAGATCCTTCAGCTTCTAAA < 41bp 1 0.781672496816087 1 0.693881273269653 experiment 0.436655006367827 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK9 ENSG00000136807 CDS Human protein_coding chr9:130549823 chr9:130549815 nonsynonymous SNV 0.999 4 13 hm5C_associated_SNPs_22702 0 0 1 0 2 CDK9 chr9:130549887 5'GT 130549887 Upstream 73bp
chr9 35660940 35660940 1 + C T GBM 35660941 + 35660921 35660961 41 ATCTCTCCCCACACAGAGGCCAGCAGACCTCTTCCTGAGGA ATCTCTCCCCACACAGAGGTCAGCAGACCTCTTCCTGAGGA < 41bp 1 0.771617563356243 1 0.218071728944778 experiment 0.456764873287515 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC107 ENSG00000159884 CDS Human protein_coding chr9:35660941 chr9:35660940 nonsynonymous SNV 0.898 0 20 hm5C_associated_SNPs_22705 0 0 0 1 1 CCDC107 chr9:35660937 3'AG 35660937 Downstream 4bp
chr10 6265943 6265943 1 + C T GBM 6265930 + 6265910 6265950 41 TTCAATTTCAGAGGAGATGCCCTACCTGAAATGCCCTCTTC TTCAATTTCAGAGGAGATGCCCTACCTGAAATGTCCTCTTC < 41bp 1 0.0376338096122034 1 0.0417560636997223 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6265930 chr10:6265943 synonymous SNV . 0 34 hm5C_associated_SNPs_22706 0 0 1 0 2 PFKFB3 chr10:6265921 3'AG 6265921 Downstream 23bp
chr10 6265943 6265943 1 + C T GBM 6265930 + 6265910 6265950 41 TTCAATTTCAGAGGAGATGCCCTACCTGAAATGCCCTCTTC TTCAATTTCAGAGGAGATGCCCTACCTGAAATGTCCTCTTC < 41bp 1 0.0376338096122034 1 0.0417560636997223 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6265930 chr10:6265943 synonymous SNV . 0 34 hm5C_associated_SNPs_22706 0 0 1 0 2 PFKFB3 chr10:6265983 5'GT 6265983 Upstream 41bp
chr15 78838067 78838067 1 + C T GBM 78838052 + 78838032 78838072 41 TTTCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGG TTTCAGCTCTATCAGAGTGACCCTAGTGGAAATTATGGGGG < 41bp 1 0.547878959369124 1 0.0918323397636414 experiment 0.904242081261751 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMA4 ENSG00000041357 CDS Human protein_coding chr15:78838052 chr15:78838067 synonymous SNV . 0 36 hm5C_associated_SNPs_22707 0 0 1 0 2 PSMA4 chr15:78837976 3'AG 78837976 Downstream 92bp
chr15 78838067 78838067 1 + C T GBM 78838052 + 78838032 78838072 41 TTTCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGG TTTCAGCTCTATCAGAGTGACCCTAGTGGAAATTATGGGGG < 41bp 1 0.547878959369124 1 0.0918323397636414 experiment 0.904242081261751 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMA4 ENSG00000041357 CDS Human protein_coding chr15:78838052 chr15:78838067 synonymous SNV . 0 36 hm5C_associated_SNPs_22707 0 0 1 0 2 PSMA4 chr15:78838106 5'GT 78838106 Upstream 40bp
chr15 78838067 78838067 1 + C T GBM 78838053 + 78838033 78838073 41 TTCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGGA TTCAGCTCTATCAGAGTGACCCTAGTGGAAATTATGGGGGA < 41bp 1 0.218995414603346 1 0.136565089225769 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMA4 ENSG00000041357 CDS Human protein_coding chr15:78838053 chr15:78838067 synonymous SNV . 0 35 hm5C_associated_SNPs_22708 0 0 1 0 2 PSMA4 chr15:78837976 3'AG 78837976 Downstream 92bp
chr15 78838067 78838067 1 + C T GBM 78838053 + 78838033 78838073 41 TTCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGGA TTCAGCTCTATCAGAGTGACCCTAGTGGAAATTATGGGGGA < 41bp 1 0.218995414603346 1 0.136565089225769 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMA4 ENSG00000041357 CDS Human protein_coding chr15:78838053 chr15:78838067 synonymous SNV . 0 35 hm5C_associated_SNPs_22708 0 0 1 0 2 PSMA4 chr15:78838106 5'GT 78838106 Upstream 40bp
chr15 78838067 78838067 1 + C T GBM 78838054 + 78838034 78838074 41 TCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGGAT TCAGCTCTATCAGAGTGACCCTAGTGGAAATTATGGGGGAT < 41bp 1 0.66564434581275 1 0.114345341920853 experiment 0.6687113083745 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMA4 ENSG00000041357 CDS Human protein_coding chr15:78838054 chr15:78838067 synonymous SNV . 0 34 hm5C_associated_SNPs_22709 0 0 1 0 2 PSMA4 chr15:78837976 3'AG 78837976 Downstream 92bp
chr15 78838067 78838067 1 + C T GBM 78838054 + 78838034 78838074 41 TCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGGAT TCAGCTCTATCAGAGTGACCCTAGTGGAAATTATGGGGGAT < 41bp 1 0.66564434581275 1 0.114345341920853 experiment 0.6687113083745 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMA4 ENSG00000041357 CDS Human protein_coding chr15:78838054 chr15:78838067 synonymous SNV . 0 34 hm5C_associated_SNPs_22709 0 0 1 0 2 PSMA4 chr15:78838106 5'GT 78838106 Upstream 40bp
chr12 53516970 53516970 1 + G A GBM 53516960 + 53516940 53516980 41 TTCTGCTTCGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT TTCTGCTTCGTCCTGGGGTTCTTCTATCCCATCATGCTGAT < 41bp 1 0.144469106640876 1 0.0318364202976227 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53516960 chr12:53516970 nonsynonymous SNV 0.996 0 31 hm5C_associated_SNPs_22711 0 0 0 0 1 SOAT2 chr12:53517000 5'GT 53517000 Upstream 31bp
chr1 110561677 110561677 1 + G A GBM 110561676 + 110561656 110561696 41 CTCTCTTACCTTTCCAGGGTCGTCTACTCAATTTGAGCTGC CTCTCTTACCTTTCCAGGGTCATCTACTCAATTTGAGCTGC < 41bp 1 0.110972494006931 1 0.0448278486728668 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL1 ENSG00000168710 CDS Human protein_coding chr1:110561676 chr1:110561677 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_22713 0 0 1 0 1 AHCYL1 chr1:110561741 5'GT 110561741 Upstream 65bp
chr4 8294059 8294059 1 + C T GBM 8294067 + 8294047 8294087 41 GTACGGGAACTCCGGGGGACCACTGGTGAACCTGGTAAGTG GTACGGGAACTCTGGGGGACCACTGGTGAACCTGGTAAGTG < 41bp 1 0.388311710601752 1 0.361923515796661 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8294067 chr4:8294059 synonymous SNV . 0 13 hm5C_associated_SNPs_22714 0 0 0 0 2 HTRA3 chr4:8294048 3'AG 8294048 Downstream 12bp
chr4 8294059 8294059 1 + C T GBM 8294067 + 8294047 8294087 41 GTACGGGAACTCCGGGGGACCACTGGTGAACCTGGTAAGTG GTACGGGAACTCTGGGGGACCACTGGTGAACCTGGTAAGTG < 41bp 1 0.388311710601752 1 0.361923515796661 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8294067 chr4:8294059 synonymous SNV . 0 13 hm5C_associated_SNPs_22714 0 0 0 0 2 HTRA3 chr4:8294080 5'GT 8294080 Upstream 22bp
chr19 10823284 10823284 1 + G A GBM 10823292 + 10823272 10823312 41 ATGTTCGACTGCGTCTTCCCCACACGGACAGCGGTGAGGCT ATGTTCGACTGCATCTTCCCCACACGGACAGCGGTGAGGCT < 41bp 1 0.188370266570212 1 0.0784645080566406 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10823292 chr19:10823284 nonsynonymous SNV 0.953 3 13 hm5C_associated_SNPs_22715 0 0 1 0 2 QTRT1 chr19:10823229 3'AG 10823229 Downstream 56bp
chr19 10823284 10823284 1 + G A GBM 10823292 + 10823272 10823312 41 ATGTTCGACTGCGTCTTCCCCACACGGACAGCGGTGAGGCT ATGTTCGACTGCATCTTCCCCACACGGACAGCGGTGAGGCT < 41bp 1 0.188370266570212 1 0.0784645080566406 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10823292 chr19:10823284 nonsynonymous SNV 0.953 3 13 hm5C_associated_SNPs_22715 0 0 1 0 2 QTRT1 chr19:10823304 5'GT 10823304 Upstream 21bp
chr1 63282295 63282295 1 + C T GBM 63282293 + 63282273 63282313 41 CGGGATGTACAATAGAGGATCACGTAATTGCAGGAAATGTA CGGGATGTACAATAGAGGATCATGTAATTGCAGGAAATGTA < 41bp 1 0.19878494114356 1 0.083753377199173 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATG4C ENSG00000125703 CDS Human protein_coding chr1:63282293 chr1:63282295 synonymous SNV . 0 23 hm5C_associated_SNPs_22716 0 0 1 0 1 ATG4C chr1:63282246 3'AG 63282246 Downstream 50bp
chr2 9621457 9621457 1 + C T GBM 9621454 + 9621434 9621474 41 CATTCCCCTGGAGGAGTACGCTGCGAACCTAAAGAGCATGG CATTCCCCTGGAGGAGTACGCTGTGAACCTAAAGAGCATGG < 41bp 1 0.672363570411505 1 0.176544576883316 experiment 0.65527285917699 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IAH1 ENSG00000134330 CDS Human protein_coding chr2:9621454 chr2:9621457 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_22717 0 0 1 1 1 IAH1 chr2:9621415 3'AG 9621415 Downstream 43bp
chr17 47119680 47119680 1 + G A GBM 47119678 + 47119658 47119698 41 CATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGA CATCGAGAATTGTTGCAGGGCCAAGCAGGAAATAATGAAGA < 41bp 1 0.0792972374781506 1 0.24129530787468 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119678 chr17:47119680 nonsynonymous SNV 0.990 4 23 hm5C_associated_SNPs_22718 0 0 1 0 1 IGF2BP1 chr17:47119604 3'AG 47119604 Downstream 77bp
chr17 47119680 47119680 1 + G A GBM 47119679 + 47119659 47119699 41 ATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGAA ATCGAGAATTGTTGCAGGGCCAAGCAGGAAATAATGAAGAA < 41bp 1 0.298415086603104 1 0.253014177083969 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119679 chr17:47119680 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_22719 0 0 1 0 1 IGF2BP1 chr17:47119604 3'AG 47119604 Downstream 77bp
chr3 52325024 52325024 1 + G A GBM 52325038 + 52325018 52325058 41 GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG GGGTGCAGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG < 41bp 1 0.588241286294685 1 0.786017179489136 experiment 0.823517427410629 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52325038 chr3:52325024 synonymous SNV . 0 7 hm5C_associated_SNPs_22720 0 0 1 0 1 GLYCTK chr3:52324976 3'AG 52324976 Downstream 49bp
chr1 977058 977058 1 + C T GBM 977045 + 977025 977065 41 GGGGCCGCCCGGGGTCTCCTCCTGCAGAAAGTGCGCTCCGG GGGGCCGCCCGGGGTCTCCTCCTGCAGAAAGTGTGCTCCGG < 41bp 1 0.100250629716647 1 0.50959575176239 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:977045 chr1:977058 nonsynonymous SNV 0.946 3 34 hm5C_associated_SNPs_22724 0 0 1 0 1 AGRN chr1:977082 5'GT 977082 Upstream 25bp
chr10 43604497 43604497 1 + A T GBM 43604501 + 43604481 43604521 41 CTGGTTCTCAACCGGAACCTCTCCATCTCGGAGAACCGCAC CTGGTTCTCAACCGGATCCTCTCCATCTCGGAGAACCGCAC < 41bp 1 0.67097969763625 1 0.943675637245178 experiment 0.6580406047275 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RET ENSG00000165731 CDS Human protein_coding chr10:43604501 chr10:43604497 nonsynonymous SNV 0.257 2 17 hm5C_associated_SNPs_22726 0 0 1 0 1 RET chr10:43604479 3'AG 43604479 Downstream 19bp
chr1 116940613 116940613 1 + A G GBM 116940615 + 116940595 116940635 41 GAGATAGTGTTTGCCAGGACCTCCCCTCAGCAGAAGCTCAT GAGATAGTGTTTGCCAGGGCCTCCCCTCAGCAGAAGCTCAT < 41bp 1 0.199482733882505 1 0.128271877765656 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116940615 chr1:116940613 nonsynonymous SNV 1.000 3 19 hm5C_associated_SNPs_22727 0 0 1 0 1 ATP1A1 chr1:116940660 5'GT 116940660 Upstream 48bp
chr1 179876983 179876983 1 + G A GBM 179876984 + 179876964 179877004 41 ACTTCACAGCTCATGATAAGCAACCTTCAGTGCTAAGTAAG ACTTCACAGCTCATGATAAACAACCTTCAGTGCTAAGTAAG < 41bp 1 0.32938749922356 1 0.203705281019211 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TOR1AIP1 ENSG00000143337 CDS Human protein_coding chr1:179876984 chr1:179876983 synonymous SNV . 0 20 hm5C_associated_SNPs_22730 0 0 1 0 2 TOR1AIP1 chr1:179876958 3'AG 179876958 Downstream 26bp
chr1 179876983 179876983 1 + G A GBM 179876984 + 179876964 179877004 41 ACTTCACAGCTCATGATAAGCAACCTTCAGTGCTAAGTAAG ACTTCACAGCTCATGATAAACAACCTTCAGTGCTAAGTAAG < 41bp 1 0.32938749922356 1 0.203705281019211 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TOR1AIP1 ENSG00000143337 CDS Human protein_coding chr1:179876984 chr1:179876983 synonymous SNV . 0 20 hm5C_associated_SNPs_22730 0 0 1 0 2 TOR1AIP1 chr1:179876999 5'GT 179876999 Upstream 17bp
chr22 25019109 25019109 1 + C T GBM 25019089 + 25019069 25019109 41 TGCAGGGGGCATTGTGACAGCTGAGGACCTGAACAACTACC TGCAGGGGGCATTGTGACAGCTGAGGACCTGAACAACTACT < 41bp 1 0.518409172292761 1 0.334731221199036 experiment 0.963181655414477 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GGT1 ENSG00000100031 CDS Human protein_coding chr22:25019089 chr22:25019109 nonsynonymous SNV 0.912 1 41 hm5C_associated_SNPs_22731 0 0 0 0 1 GGT1 chr22:25019074 3'AG 25019074 Downstream 36bp
chr19 48954443 48954443 1 + C T GBM 48954428 + 48954408 48954448 41 AGCTGGAGCCGCCGGGAGCCCTTCCTGCTCAGTGGCGGGGA AGCTGGAGCCGCCGGGAGCCCTTCCTGCTCAGTGGTGGGGA < 41bp 1 0.232245655739985 1 0.341845214366913 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRWD1 ENSG00000105447 CDS Human protein_coding chr19:48954428 chr19:48954443 synonymous SNV . 0 36 hm5C_associated_SNPs_22732 0 0 1 0 1 GRWD1 chr19:48954488 5'GT 48954488 Upstream 46bp
chr7 128486412 128486412 1 + G A GBM 128486405 + 128486385 128486425 41 AGGTCGCTGTGCCCAAGAGCCCCTTCCGAGTGGGCGTGACC AGGTCGCTGTGCCCAAGAGCCCCTTCCAAGTGGGCGTGACC < 41bp 1 0.0207994257200362 1 0.0403722822666168 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486405 chr7:128486412 nonsynonymous SNV 0.991 3 28 hm5C_associated_SNPs_22733 1 0 1 0 1 FLNC chr7:128486355 3'AG 128486355 Downstream 58bp
chr17 79990839 79990839 1 + G A GBM 79990825 + 79990805 79990845 41 TCCCACCTTTTTCCCAAGGACGTCTTTCTGATCTGCTTCTC TCCCACCTTTTTCCCAAGGACGTCTTTCTGATCTACTTCTC < 41bp 1 0.180165786305939 1 0.056683748960495 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAC3 ENSG00000169750 CDS Human protein_coding chr17:79990825 chr17:79990839 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_22735 0 0 1 0 2 RAC3 chr17:79990823 3'AG 79990823 Downstream 17bp
chr17 79990839 79990839 1 + G A GBM 79990825 + 79990805 79990845 41 TCCCACCTTTTTCCCAAGGACGTCTTTCTGATCTGCTTCTC TCCCACCTTTTTCCCAAGGACGTCTTTCTGATCTACTTCTC < 41bp 1 0.180165786305939 1 0.056683748960495 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAC3 ENSG00000169750 CDS Human protein_coding chr17:79990825 chr17:79990839 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_22735 0 0 1 0 2 RAC3 chr17:79990885 5'GT 79990885 Upstream 47bp
chr7 44148536 44148536 1 + G A GBM 44148521 + 44148501 44148541 41 ACTATTACTTTGGGCCTCCTCCGCCCCAGAAGCCCGATGCT ACTATTACTTTGGGCCTCCTCCGCCCCAGAAGCCCAATGCT < 41bp 1 0.172759694939601 1 0.617817163467407 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44148521 chr7:44148536 nonsynonymous SNV 0.010 2 36 hm5C_associated_SNPs_22737 0 0 0 0 2 AEBP1 chr7:44148498 3'AG 44148498 Downstream 39bp
chr7 44148536 44148536 1 + G A GBM 44148521 + 44148501 44148541 41 ACTATTACTTTGGGCCTCCTCCGCCCCAGAAGCCCGATGCT ACTATTACTTTGGGCCTCCTCCGCCCCAGAAGCCCAATGCT < 41bp 1 0.172759694939601 1 0.617817163467407 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44148521 chr7:44148536 nonsynonymous SNV 0.010 2 36 hm5C_associated_SNPs_22737 0 0 0 0 2 AEBP1 chr7:44148575 5'GT 44148575 Upstream 40bp
chr6 27806760 27806760 1 + G A GBM 27806746 + 27806726 27806766 41 AGACGGCCGTGCGCCTGCTGCTGCCAGGGGAGCTGGCCAAG AGACGGCCGTGCGCCTGCTGCTGCCAGGGGAGCTAGCCAAG < 41bp 1 0.604153012095187 1 0.207083731889725 experiment 0.791693975809627 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806746 chr6:27806760 synonymous SNV . 0 35 hm5C_associated_SNPs_22738 0 0 1 0 2 HIST1H2BN chr6:27806816 5'GT 27806816 Upstream 57bp
chr6 27806760 27806760 1 + G A GBM 27806746 + 27806726 27806766 41 AGACGGCCGTGCGCCTGCTGCTGCCAGGGGAGCTGGCCAAG AGACGGCCGTGCGCCTGCTGCTGCCAGGGGAGCTAGCCAAG < 41bp 1 0.604153012095187 1 0.207083731889725 experiment 0.791693975809627 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806746 chr6:27806760 synonymous SNV . 0 35 hm5C_associated_SNPs_22738 0 0 1 0 2 HIST1H2BN chr6:27806843 5'GT 27806843 Upstream 84bp
chrX 54838631 54838631 1 + C A GBM 54838641 + 54838621 54838661 41 AGAATGACCACTTGTACATTCTTCTCAGCACCTTAGAGCCC AGAATGACCAATTGTACATTCTTCTCAGCACCTTAGAGCCC < 41bp 1 0.129012718763052 1 0.080108255147934 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54838641 chrX:54838631 nonsynonymous SNV 0.975 3 11 hm5C_associated_SNPs_22741 0 0 1 0 2 MAGED2 chrX:54838590 3'AG 54838590 Downstream 42bp
chrX 54838631 54838631 1 + C A GBM 54838641 + 54838621 54838661 41 AGAATGACCACTTGTACATTCTTCTCAGCACCTTAGAGCCC AGAATGACCAATTGTACATTCTTCTCAGCACCTTAGAGCCC < 41bp 1 0.129012718763052 1 0.080108255147934 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54838641 chrX:54838631 nonsynonymous SNV 0.975 3 11 hm5C_associated_SNPs_22741 0 0 1 0 2 MAGED2 chrX:54838684 5'GT 54838684 Upstream 54bp
chr2 10264898 10264898 1 + T C GBM 10264882 + 10264862 10264902 41 GAAGTTCAGATTACAGAAGCCCGCTGTTTCTATGGCTTCCA GAAGTTCAGATTACAGAAGCCCGCTGTTTCTATGGCCTCCA < 41bp 1 0.251428070286731 1 0.0773168504238129 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RRM2 ENSG00000171848 CDS Human protein_coding chr2:10264882 chr2:10264898 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_22746 0 0 0 0 2 RRM2 chr2:10264844 3'AG 10264844 Downstream 55bp
chr2 10264898 10264898 1 + T C GBM 10264882 + 10264862 10264902 41 GAAGTTCAGATTACAGAAGCCCGCTGTTTCTATGGCTTCCA GAAGTTCAGATTACAGAAGCCCGCTGTTTCTATGGCCTCCA < 41bp 1 0.251428070286731 1 0.0773168504238129 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RRM2 ENSG00000171848 CDS Human protein_coding chr2:10264882 chr2:10264898 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_22746 0 0 0 0 2 RRM2 chr2:10264977 5'GT 10264977 Upstream 80bp
chr19 39398200 39398200 1 + C T GBM 39398207 + 39398187 39398227 41 ACCCCATCCTCGCCCGCCTCCTCCGTGCACACGGAGCCCCT ACCCCATCCTCGCTCGCCTCCTCCGTGCACACGGAGCCCCT < 41bp 1 0.791563410755097 1 0.458749920129776 experiment 0.416873178489806 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39398207 chr19:39398200 synonymous SNV . 0 14 hm5C_associated_SNPs_22750 0 0 1 0 1 NFKBIB chr19:39398299 5'GT 39398299 Upstream 100bp
chr1 145325981 145325981 1 + G A GBM 145325991 + 145325971 145326011 41 GATGAGAAAGGGCCTGAAGTCTTGCAAGACTCACTGGATAG GATGAGAAAGAGCCTGAAGTCTTGCAAGACTCACTGGATAG < 41bp 1 0.161460117871666 1 0.107846617698669 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NBPF10 ENSG00000163386 CDS Human other chr1:145325991 chr1:145325981 nonsynonymous SNV . 0 11 hm5C_associated_SNPs_22751 0 0 0 0 1 NBPF10 chr1:145325952 3'AG 145325952 Downstream 30bp
chr19 10823297 10823297 1 + G A GBM 10823292 + 10823272 10823312 41 ATGTTCGACTGCGTCTTCCCCACACGGACAGCGGTGAGGCT ATGTTCGACTGCGTCTTCCCCACACAGACAGCGGTGAGGCT < 41bp 1 0.189350627193704 1 0.0931949019432068 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10823292 chr19:10823297 nonsynonymous SNV 0.929 3 26 hm5C_associated_SNPs_22752 0 0 1 0 2 QTRT1 chr19:10823229 3'AG 10823229 Downstream 69bp
chr19 10823297 10823297 1 + G A GBM 10823292 + 10823272 10823312 41 ATGTTCGACTGCGTCTTCCCCACACGGACAGCGGTGAGGCT ATGTTCGACTGCGTCTTCCCCACACAGACAGCGGTGAGGCT < 41bp 1 0.189350627193704 1 0.0931949019432068 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10823292 chr19:10823297 nonsynonymous SNV 0.929 3 26 hm5C_associated_SNPs_22752 0 0 1 0 2 QTRT1 chr19:10823304 5'GT 10823304 Upstream 8bp
chr1 7796551 7796551 1 + G A GBM 7796544 + 7796524 7796564 41 TTCCGCGGAATGACCCTACTCCACCTGGCCGCTGCCCAGGG TTCCGCGGAATGACCCTACTCCACCTGACCGCTGCCCAGGG < 41bp 1 0.265125135925401 1 0.406592071056366 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMTA1 ENSG00000171735 CDS Human protein_coding chr1:7796544 chr1:7796551 nonsynonymous SNV 0.997 4 28 hm5C_associated_SNPs_22754 0 0 1 0 1 CAMTA1 chr1:7796600 5'GT 7796600 Upstream 50bp
chr12 101711355 101711355 1 + C T GBM 101711340 + 101711320 101711360 41 GGGATGGTGGCAGAGGAAATCGAAGAGGAACCTGCCGCAGG GGGATGGTGGCAGAGGAAATCGAAGAGGAACCTGCTGCAGG < 41bp 1 0.651425400045708 1 0.85453075170517 experiment 0.697149199908584 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711340 chr12:101711355 synonymous SNV . 0 36 hm5C_associated_SNPs_22755 0 0 1 0 2 UTP20 chr12:101711256 3'AG 101711256 Downstream 100bp
chr12 101711355 101711355 1 + C T GBM 101711340 + 101711320 101711360 41 GGGATGGTGGCAGAGGAAATCGAAGAGGAACCTGCCGCAGG GGGATGGTGGCAGAGGAAATCGAAGAGGAACCTGCTGCAGG < 41bp 1 0.651425400045708 1 0.85453075170517 experiment 0.697149199908584 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711340 chr12:101711355 synonymous SNV . 0 36 hm5C_associated_SNPs_22755 0 0 1 0 2 UTP20 chr12:101711441 5'GT 101711441 Upstream 87bp
chr12 101711355 101711355 1 + C T GBM 101711351 + 101711331 101711371 41 AGAGGAAATCGAAGAGGAACCTGCCGCAGGAGATGATGAAG AGAGGAAATCGAAGAGGAACCTGCTGCAGGAGATGATGAAG < 41bp 1 0.446739014053192 1 0.665351390838623 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711351 chr12:101711355 synonymous SNV . 0 25 hm5C_associated_SNPs_22756 0 0 1 0 2 UTP20 chr12:101711256 3'AG 101711256 Downstream 100bp
chr12 101711355 101711355 1 + C T GBM 101711351 + 101711331 101711371 41 AGAGGAAATCGAAGAGGAACCTGCCGCAGGAGATGATGAAG AGAGGAAATCGAAGAGGAACCTGCTGCAGGAGATGATGAAG < 41bp 1 0.446739014053192 1 0.665351390838623 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711351 chr12:101711355 synonymous SNV . 0 25 hm5C_associated_SNPs_22756 0 0 1 0 2 UTP20 chr12:101711441 5'GT 101711441 Upstream 87bp
chr12 101711355 101711355 1 + C T GBM 101711354 + 101711334 101711374 41 GGAAATCGAAGAGGAACCTGCCGCAGGAGATGATGAAGAGT GGAAATCGAAGAGGAACCTGCTGCAGGAGATGATGAAGAGT < 41bp 1 0.537051447031218 1 0.667464792728424 experiment 0.925897105937564 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711354 chr12:101711355 synonymous SNV . 0 22 hm5C_associated_SNPs_22757 0 0 1 0 2 UTP20 chr12:101711256 3'AG 101711256 Downstream 100bp
chr12 101711355 101711355 1 + C T GBM 101711354 + 101711334 101711374 41 GGAAATCGAAGAGGAACCTGCCGCAGGAGATGATGAAGAGT GGAAATCGAAGAGGAACCTGCTGCAGGAGATGATGAAGAGT < 41bp 1 0.537051447031218 1 0.667464792728424 experiment 0.925897105937564 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711354 chr12:101711355 synonymous SNV . 0 22 hm5C_associated_SNPs_22757 0 0 1 0 2 UTP20 chr12:101711441 5'GT 101711441 Upstream 87bp
chr12 101711355 101711355 1 + C T GBM 101711357 + 101711337 101711377 41 AATCGAAGAGGAACCTGCCGCAGGAGATGATGAAGAGTTGG AATCGAAGAGGAACCTGCTGCAGGAGATGATGAAGAGTTGG < 41bp 1 0.743188149238286 1 0.79108989238739 experiment 0.513623701523428 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711357 chr12:101711355 synonymous SNV . 0 19 hm5C_associated_SNPs_22758 0 0 1 0 2 UTP20 chr12:101711256 3'AG 101711256 Downstream 100bp
chr12 101711355 101711355 1 + C T GBM 101711357 + 101711337 101711377 41 AATCGAAGAGGAACCTGCCGCAGGAGATGATGAAGAGTTGG AATCGAAGAGGAACCTGCTGCAGGAGATGATGAAGAGTTGG < 41bp 1 0.743188149238286 1 0.79108989238739 experiment 0.513623701523428 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711357 chr12:101711355 synonymous SNV . 0 19 hm5C_associated_SNPs_22758 0 0 1 0 2 UTP20 chr12:101711441 5'GT 101711441 Upstream 87bp
chr16 67572596 67572596 1 + G A GBM 67572603 + 67572583 67572623 41 CGGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCG CGGTCTTCAGCCCACCGGGGCCCCCACGGAAGCCCCCCGCG < 41bp 1 0.0577753004957944 1 0.15443217754364 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572603 chr16:67572596 synonymous SNV . 0 14 hm5C_associated_SNPs_22760 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 34bp
chr16 67572596 67572596 1 + G A GBM 67572603 + 67572583 67572623 41 CGGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCG CGGTCTTCAGCCCACCGGGGCCCCCACGGAAGCCCCCCGCG < 41bp 1 0.0577753004957944 1 0.15443217754364 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572603 chr16:67572596 synonymous SNV . 0 14 hm5C_associated_SNPs_22760 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 22bp
chr16 67572596 67572596 1 + G A GBM 67572604 + 67572584 67572624 41 GGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGC GGTCTTCAGCCCACCGGGGCCCCCACGGAAGCCCCCCGCGC < 41bp 1 0.451847623289268 1 0.367152452468872 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572604 chr16:67572596 synonymous SNV . 0 13 hm5C_associated_SNPs_22761 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 34bp
chr16 67572596 67572596 1 + G A GBM 67572604 + 67572584 67572624 41 GGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGC GGTCTTCAGCCCACCGGGGCCCCCACGGAAGCCCCCCGCGC < 41bp 1 0.451847623289268 1 0.367152452468872 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572604 chr16:67572596 synonymous SNV . 0 13 hm5C_associated_SNPs_22761 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 22bp
chr16 67572596 67572596 1 + G A GBM 67572605 + 67572585 67572625 41 GTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCT GTCTTCAGCCCACCGGGGCCCCCACGGAAGCCCCCCGCGCT < 41bp 1 0.120542321372419 1 0.345785349607468 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572605 chr16:67572596 synonymous SNV . 0 12 hm5C_associated_SNPs_22762 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 34bp
chr16 67572596 67572596 1 + G A GBM 67572605 + 67572585 67572625 41 GTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCT GTCTTCAGCCCACCGGGGCCCCCACGGAAGCCCCCCGCGCT < 41bp 1 0.120542321372419 1 0.345785349607468 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572605 chr16:67572596 synonymous SNV . 0 12 hm5C_associated_SNPs_22762 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 22bp
chr16 67572596 67572596 1 + G A GBM 67572606 + 67572586 67572626 41 TCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTC TCTTCAGCCCACCGGGGCCCCCACGGAAGCCCCCCGCGCTC < 41bp 1 0.453133779365057 1 0.287953317165375 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572606 chr16:67572596 synonymous SNV . 0 11 hm5C_associated_SNPs_22763 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 34bp
chr16 67572596 67572596 1 + G A GBM 67572606 + 67572586 67572626 41 TCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTC TCTTCAGCCCACCGGGGCCCCCACGGAAGCCCCCCGCGCTC < 41bp 1 0.453133779365057 1 0.287953317165375 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572606 chr16:67572596 synonymous SNV . 0 11 hm5C_associated_SNPs_22763 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 22bp
chr16 67572596 67572596 1 + G A GBM 67572607 + 67572587 67572627 41 CTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTCT CTTCAGCCCACCGGGGCCCCCACGGAAGCCCCCCGCGCTCT < 41bp 1 0.750674077289552 1 0.782069683074951 experiment 0.498651845420896 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572607 chr16:67572596 synonymous SNV . 0 10 hm5C_associated_SNPs_22764 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 34bp
chr16 67572596 67572596 1 + G A GBM 67572607 + 67572587 67572627 41 CTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTCT CTTCAGCCCACCGGGGCCCCCACGGAAGCCCCCCGCGCTCT < 41bp 1 0.750674077289552 1 0.782069683074951 experiment 0.498651845420896 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572607 chr16:67572596 synonymous SNV . 0 10 hm5C_associated_SNPs_22764 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 22bp
chr9 129458214 129458214 1 + G A GBM 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGCCCCTACGACAGCAGCGACCCCTTCCAGCAGGG < 41bp 1 0.601347024591791 1 0.600004971027374 experiment 0.797305950816418 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458214 nonsynonymous SNV 0.917 2 17 hm5C_associated_SNPs_22765 0 0 0 0 3 LMX1B chr9:129458118 3'AG 129458118 Downstream 97bp
chr9 129458214 129458214 1 + G A GBM 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGCCCCTACGACAGCAGCGACCCCTTCCAGCAGGG < 41bp 1 0.601347024591791 1 0.600004971027374 experiment 0.797305950816418 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458214 nonsynonymous SNV 0.917 2 17 hm5C_associated_SNPs_22765 0 0 0 0 3 LMX1B chr9:129458261 5'GT 129458261 Upstream 48bp
chr9 129458214 129458214 1 + G A GBM 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGCCCCTACGACAGCAGCGACCCCTTCCAGCAGGG < 41bp 1 0.601347024591791 1 0.600004971027374 experiment 0.797305950816418 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458214 nonsynonymous SNV 0.917 2 17 hm5C_associated_SNPs_22765 0 0 0 0 3 LMX1B chr9:129458282 5'GT 129458282 Upstream 69bp
chr1 31897702 31897702 1 + G A GBM 31897691 + 31897671 31897711 41 ATGCTCTGCGTGAGCAGCAGCCGGGACCCCCGGGCTGCCAT ATGCTCTGCGTGAGCAGCAGCCGGGACCCCCAGGCTGCCAT < 41bp 1 0.679931166136295 1 0.872019052505493 experiment 0.640137667727409 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31897691 chr1:31897702 nonsynonymous SNV 0.831 4 32 hm5C_associated_SNPs_22767 0 0 1 0 1 SERINC2 chr1:31897720 5'GT 31897720 Upstream 19bp
chr11 61631211 61631211 1 + C T GBM 61631203 + 61631183 61631223 41 CAGCCACCTGCAACGTGGAGCAGTCCTTCTTCAACGACTGG CAGCCACCTGCAACGTGGAGCAGTCCTTTTTCAACGACTGG < 41bp 1 0.0277733927319981 1 0.336548149585724 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61631203 chr11:61631211 synonymous SNV . 0 29 hm5C_associated_SNPs_22768 0 0 1 0 2 FADS2 chr11:61631179 3'AG 61631179 Downstream 33bp
chr11 61631211 61631211 1 + C T GBM 61631203 + 61631183 61631223 41 CAGCCACCTGCAACGTGGAGCAGTCCTTCTTCAACGACTGG CAGCCACCTGCAACGTGGAGCAGTCCTTTTTCAACGACTGG < 41bp 1 0.0277733927319981 1 0.336548149585724 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61631203 chr11:61631211 synonymous SNV . 0 29 hm5C_associated_SNPs_22768 0 0 1 0 2 FADS2 chr11:61631258 5'GT 61631258 Upstream 48bp
chr2 128867271 128867271 1 + A G GBM 128867287 + 128867267 128867307 41 GAAGACTTGTGAATCTGATACCCTTGAGGCTCTTCTACTGA GAAGGCTTGTGAATCTGATACCCTTGAGGCTCTTCTACTGA < 41bp 1 0.0435439589332206 1 0.0645526349544525 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128867287 chr2:128867271 nonsynonymous SNV 0.993 0 5 hm5C_associated_SNPs_22769 0 0 1 0 2 UGGT1 chr2:128867208 3'AG 128867208 Downstream 64bp
chr2 128867271 128867271 1 + A G GBM 128867287 + 128867267 128867307 41 GAAGACTTGTGAATCTGATACCCTTGAGGCTCTTCTACTGA GAAGGCTTGTGAATCTGATACCCTTGAGGCTCTTCTACTGA < 41bp 1 0.0435439589332206 1 0.0645526349544525 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128867287 chr2:128867271 nonsynonymous SNV 0.993 0 5 hm5C_associated_SNPs_22769 0 0 1 0 2 UGGT1 chr2:128867320 5'GT 128867320 Upstream 50bp
chr12 95877031 95877031 1 + G A GBM 95877015 + 95876995 95877035 41 AGATGGCGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAA AGATGGCGATGGAGATGGAGCAACTGGAAAGAAGAAAAAAA < 41bp 1 0.333463057462786 1 0.360905647277832 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout METAP2 ENSG00000111142 CDS Human protein_coding chr12:95877015 chr12:95877031 synonymous SNV . 0 37 hm5C_associated_SNPs_22770 0 0 1 0 2 METAP2 chr12:95876991 3'AG 95876991 Downstream 41bp
chr12 95877031 95877031 1 + G A GBM 95877015 + 95876995 95877035 41 AGATGGCGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAA AGATGGCGATGGAGATGGAGCAACTGGAAAGAAGAAAAAAA < 41bp 1 0.333463057462786 1 0.360905647277832 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout METAP2 ENSG00000111142 CDS Human protein_coding chr12:95877015 chr12:95877031 synonymous SNV . 0 37 hm5C_associated_SNPs_22770 0 0 1 0 2 METAP2 chr12:95877056 5'GT 95877056 Upstream 26bp
chr19 13051173 13051173 1 + G T GBM 13051158 + 13051138 13051178 41 GAGTCCGGCTCCTTGGAAGACGATTGGGACTTCCTGCCACC GAGTCCGGCTCCTTGGAAGACGATTGGGACTTCCTTCCACC < 41bp 1 0.322305552724869 1 0.309778839349747 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051158 chr19:13051173 synonymous SNV . 0 36 hm5C_associated_SNPs_22771 0 0 1 0 1 CALR chr19:13051266 5'GT 13051266 Upstream 94bp
chr19 13051173 13051173 1 + G T GBM 13051171 + 13051151 13051191 41 TGGAAGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAG TGGAAGACGATTGGGACTTCCTTCCACCCAAGAAGATAAAG < 41bp 1 0.122909121322613 1 0.125648349523544 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051171 chr19:13051173 synonymous SNV . 0 23 hm5C_associated_SNPs_22772 0 0 1 0 1 CALR chr19:13051266 5'GT 13051266 Upstream 94bp
chr19 13051173 13051173 1 + G T GBM 13051175 + 13051155 13051195 41 AGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAGGATC AGACGATTGGGACTTCCTTCCACCCAAGAAGATAAAGGATC < 41bp 1 0.398708703373437 1 0.293612778186798 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051175 chr19:13051173 synonymous SNV . 0 19 hm5C_associated_SNPs_22773 0 0 1 0 1 CALR chr19:13051266 5'GT 13051266 Upstream 94bp
chr2 11300636 11300636 1 + C T GBM 11300656 + 11300636 11300676 41 CGCTGACCTACCTGGAGTACCCCATCCTCATCGCGCAAGGT TGCTGACCTACCTGGAGTACCCCATCCTCATCGCGCAAGGT < 41bp 1 0.197515968967083 1 0.19433605670929 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11300656 chr2:11300636 nonsynonymous SNV 0.753 1 1 hm5C_associated_SNPs_22774 0 0 1 0 2 PQLC3 chr2:11300592 3'AG 11300592 Downstream 45bp
chr2 11300636 11300636 1 + C T GBM 11300656 + 11300636 11300676 41 CGCTGACCTACCTGGAGTACCCCATCCTCATCGCGCAAGGT TGCTGACCTACCTGGAGTACCCCATCCTCATCGCGCAAGGT < 41bp 1 0.197515968967083 1 0.19433605670929 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11300656 chr2:11300636 nonsynonymous SNV 0.753 1 1 hm5C_associated_SNPs_22774 0 0 1 0 2 PQLC3 chr2:11300674 5'GT 11300674 Upstream 39bp
chr3 184021749 184021749 1 + T C GBM 184021744 + 184021724 184021764 41 GCTCTTTGTAGTCAGGAGCTCTTCTTGCCTGTGGCATAGTG GCTCTTTGTAGTCAGGAGCTCTTCTCGCCTGTGGCATAGTG < 41bp 1 0.114774331272754 1 0.139977902173996 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184021744 chr3:184021749 synonymous SNV . 0 26 hm5C_associated_SNPs_22775 0 0 1 0 1 PSMD2 chr3:184021735 3'AG 184021735 Downstream 15bp
chr6 36564707 36564707 1 + C T GBM 36564724 + 36564704 36564744 41 TCCCCGAGATGCAGCTGATGCAGTCCGAGAGCTAGATGGAA TCCTCGAGATGCAGCTGATGCAGTCCGAGAGCTAGATGGAA < 41bp 1 0.259686846328752 1 0.204795509576797 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36564724 chr6:36564707 synonymous SNV . 0 4 hm5C_associated_SNPs_22777 0 0 1 0 1 SRSF3 chr6:36564745 5'GT 36564745 Upstream 39bp
chr3 184042686 184042686 1 + G T GBM 184042675 + 184042655 184042695 41 GTGAATGGCAGGCAGAGGAACGAGGACGCCTGAAGGAAGAG GTGAATGGCAGGCAGAGGAACGAGGACGCCTTAAGGAAGAG < 41bp 1 0.612277056560979 1 0.557397305965424 experiment 0.775445886878042 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042675 chr3:184042686 synonymous SNV . 0 32 hm5C_associated_SNPs_22778 0 0 1 0 1 EIF4G1 chr3:184042666 3'AG 184042666 Downstream 21bp
chr3 184042686 184042686 1 + G T GBM 184042681 + 184042661 184042701 41 GGCAGGCAGAGGAACGAGGACGCCTGAAGGAAGAGCTGGAA GGCAGGCAGAGGAACGAGGACGCCTTAAGGAAGAGCTGGAA < 41bp 1 0.46067850701713 1 0.426222860813141 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042681 chr3:184042686 synonymous SNV . 0 26 hm5C_associated_SNPs_22779 0 0 1 0 1 EIF4G1 chr3:184042666 3'AG 184042666 Downstream 21bp
chr3 184042686 184042686 1 + G T GBM 184042684 + 184042664 184042704 41 AGGCAGAGGAACGAGGACGCCTGAAGGAAGAGCTGGAAGAG AGGCAGAGGAACGAGGACGCCTTAAGGAAGAGCTGGAAGAG < 41bp 1 0.515401382863695 1 0.466239184141159 experiment 0.969197234272611 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042684 chr3:184042686 synonymous SNV . 0 23 hm5C_associated_SNPs_22780 0 0 1 0 1 EIF4G1 chr3:184042666 3'AG 184042666 Downstream 21bp
chr1 248039235 248039235 1 + C T GBM 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCTGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA < 41bp 1 0.691976986683217 1 0.406234562397003 experiment 0.616046026633566 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039235 nonsynonymous SNV 0.005 4 5 hm5C_associated_SNPs_22781 0 0 0 0 1 TRIM58 chr1:248039202 3'AG 248039202 Downstream 34bp
chr17 57738898 57738898 1 + T C GBM 57738906 + 57738886 57738926 41 ACTTTGGTATCCTTTTGGACCAGGGACAGCTCAACAAATAC ACTTTGGTATCCCTTTGGACCAGGGACAGCTCAACAAATAC < 41bp 1 0.629166476426427 1 0.74748158454895 experiment 0.741667047147146 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57738906 chr17:57738898 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_22782 0 0 1 0 1 CLTC chr17:57738804 3'AG 57738804 Downstream 95bp
chrX 47098522 47098522 1 + G A GBM 47098540 + 47098520 47098560 41 AGGGGACCAGGACTCCAGCACCTTCCCTGGCTGCATCAACA AGAGGACCAGGACTCCAGCACCTTCCCTGGCTGCATCAACA < 41bp 1 0.00704018875086204 1 0.0632175803184509 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47098540 chrX:47098522 nonsynonymous SNV 1.000 0 3 hm5C_associated_SNPs_22783 0 0 0 0 1 USP11 chrX:47098578 5'GT 47098578 Upstream 57bp
chr1 7845640 7845640 1 + G A GBM 7845627 + 7845607 7845647 41 GCCCTCAACTATGCTCTCCGCTGTGTCCACAGCGTTCAAGG GCCCTCAACTATGCTCTCCGCTGTGTCCACAGCATTCAAGG < 41bp 1 0.336400911578411 1 0.119688600301743 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PER3 ENSG00000049246 CDS Human protein_coding chr1:7845627 chr1:7845640 nonsynonymous SNV 0.997 3 34 hm5C_associated_SNPs_22784 0 0 0 0 1 PER3 chr1:7845646 5'GT 7845646 Upstream 7bp
chr14 76638263 76638263 1 + T C GBM 76638267 + 76638247 76638287 41 TAATCTTCTGCCCAAGTGGGCTCCTGATCATTGTTCTGAAG TAATCTTCTGCCCAAGCGGGCTCCTGATCATTGTTCTGAAG < 41bp 1 0.229022283244076 1 0.106115698814392 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GPATCH2L ENSG00000089916 CDS Human protein_coding chr14:76638267 chr14:76638263 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_22785 0 0 1 0 2 GPATCH2L chr14:76638186 3'AG 76638186 Downstream 78bp
chr14 76638263 76638263 1 + T C GBM 76638267 + 76638247 76638287 41 TAATCTTCTGCCCAAGTGGGCTCCTGATCATTGTTCTGAAG TAATCTTCTGCCCAAGCGGGCTCCTGATCATTGTTCTGAAG < 41bp 1 0.229022283244076 1 0.106115698814392 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GPATCH2L ENSG00000089916 CDS Human protein_coding chr14:76638267 chr14:76638263 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_22785 0 0 1 0 2 GPATCH2L chr14:76638362 5'GT 76638362 Upstream 100bp
chr5 176687001 176687001 1 + C T GBM 176686992 + 176686972 176687012 41 CTGATTTTCCTGCTTTAGGTCGGTTGATGCGCTGTGTCCGC CTGATTTTCCTGCTTTAGGTCGGTTGATGTGCTGTGTCCGC < 41bp 1 0.0933015890093635 1 0.400841385126114 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176686992 chr5:176687001 nonsynonymous SNV 0.996 5 30 hm5C_associated_SNPs_22786 0 0 1 0 1 NSD1 chr5:176686990 3'AG 176686990 Downstream 12bp
chr7 130020970 130020970 1 + G A GBM 130020965 + 130020945 130020985 41 GGTGCTCCGAATCTCTGTAGCCGATGAGGCCCAGGTACAGA GGTGCTCCGAATCTCTGTAGCCGATAAGGCCCAGGTACAGA < 41bp 1 0.234054301720417 1 0.0936456024646759 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130020965 chr7:130020970 nonsynonymous SNV 0.172 2 26 hm5C_associated_SNPs_22787 0 0 0 0 2 CPA1 chr7:130020939 3'AG 130020939 Downstream 32bp
chr7 130020970 130020970 1 + G A GBM 130020965 + 130020945 130020985 41 GGTGCTCCGAATCTCTGTAGCCGATGAGGCCCAGGTACAGA GGTGCTCCGAATCTCTGTAGCCGATAAGGCCCAGGTACAGA < 41bp 1 0.234054301720417 1 0.0936456024646759 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130020965 chr7:130020970 nonsynonymous SNV 0.172 2 26 hm5C_associated_SNPs_22787 0 0 0 0 2 CPA1 chr7:130021020 5'GT 130021020 Upstream 51bp
chr19 58772931 58772931 1 + G C GBM 58772944 + 58772924 58772964 41 AGAAGTGGCCCTGGAGAGACCCCCTTCAGATGTGAGGAACG AGAAGTGCCCCTGGAGAGACCCCCTTCAGATGTGAGGAACG < 41bp 1 0.196389095505007 1 0.164288461208344 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58772944 chr19:58772931 nonsynonymous SNV 0.000 1 8 hm5C_associated_SNPs_22788 0 0 1 0 1 ZNF544 chr19:58772922 3'AG 58772922 Downstream 10bp
chr22 38074643 38074643 1 + G A GBM 38074635 + 38074615 38074655 41 AGCAGCGGGAGGCTGTCTTTCCCTTCCAGCCTGGAAGTGTT AGCAGCGGGAGGCTGTCTTTCCCTTCCAACCTGGAAGTGTT < 41bp 1 0.193626946144624 1 0.271161019802094 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LGALS1 ENSG00000100097 CDS Human protein_coding chr22:38074635 chr22:38074643 synonymous SNV . 0 29 hm5C_associated_SNPs_22789 0 0 1 0 1 LGALS1 chr22:38074661 5'GT 38074661 Upstream 19bp
chr22 38074643 38074643 1 + G A GBM 38074636 + 38074616 38074656 41 GCAGCGGGAGGCTGTCTTTCCCTTCCAGCCTGGAAGTGTTG GCAGCGGGAGGCTGTCTTTCCCTTCCAACCTGGAAGTGTTG < 41bp 1 0.04896998677076 1 0.360706478357315 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LGALS1 ENSG00000100097 CDS Human protein_coding chr22:38074636 chr22:38074643 synonymous SNV . 0 28 hm5C_associated_SNPs_22790 0 0 1 0 1 LGALS1 chr22:38074661 5'GT 38074661 Upstream 19bp
chr22 38074643 38074643 1 + G A GBM 38074637 + 38074617 38074657 41 CAGCGGGAGGCTGTCTTTCCCTTCCAGCCTGGAAGTGTTGC CAGCGGGAGGCTGTCTTTCCCTTCCAACCTGGAAGTGTTGC < 41bp 1 0.23185215319469 1 0.383107244968414 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LGALS1 ENSG00000100097 CDS Human protein_coding chr22:38074637 chr22:38074643 synonymous SNV . 0 27 hm5C_associated_SNPs_22791 0 0 1 0 1 LGALS1 chr22:38074661 5'GT 38074661 Upstream 19bp
chr9 123898173 123898173 1 + A G GBM 123898159 + 123898139 123898179 41 TGCAGCAGACCCAGGGAGATCTCAGTGCCTATGAAGCTGAG TGCAGCAGACCCAGGGAGATCTCAGTGCCTATGAGGCTGAG < 41bp 1 0.67211634832243 1 0.422617703676224 experiment 0.655767303355139 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNTRL ENSG00000119397 CDS Human protein_coding chr9:123898159 chr9:123898173 synonymous SNV . 0 35 hm5C_associated_SNPs_22793 0 0 1 0 2 CNTRL chr9:123898084 3'AG 123898084 Downstream 90bp
chr9 123898173 123898173 1 + A G GBM 123898159 + 123898139 123898179 41 TGCAGCAGACCCAGGGAGATCTCAGTGCCTATGAAGCTGAG TGCAGCAGACCCAGGGAGATCTCAGTGCCTATGAGGCTGAG < 41bp 1 0.67211634832243 1 0.422617703676224 experiment 0.655767303355139 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNTRL ENSG00000119397 CDS Human protein_coding chr9:123898159 chr9:123898173 synonymous SNV . 0 35 hm5C_associated_SNPs_22793 0 0 1 0 2 CNTRL chr9:123898260 5'GT 123898260 Upstream 88bp
chr3 101520152 101520152 1 + G A GBM 101520149 + 101520129 101520169 41 GTTTGTTTCCTCCCAGGTGACAGGAATTAGCCGAAATCCCT GTTTGTTTCCTCCCAGGTGACAGAAATTAGCCGAAATCCCT < 41bp 1 0.695670853874024 1 0.659478306770325 experiment 0.608658292251952 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NXPE3 ENSG00000144815 CDS Human protein_coding chr3:101520149 chr3:101520152 nonsynonymous SNV 0.418 0 24 hm5C_associated_SNPs_22797 0 0 1 0 1 NXPE3 chr3:101520079 3'AG 101520079 Downstream 74bp
chr16 31487442 31487442 1 + G A GBM 31487435 + 31487415 31487455 41 TCTTCGAGAAGGATGGAGCCCCCTTCTGCCCCGAGTGCTAC TCTTCGAGAAGGATGGAGCCCCCTTCTACCCCGAGTGCTAC < 41bp 1 0.0996139746422927 1 0.0513380169868469 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TGFB1I1 ENSG00000140682 CDS Human protein_coding chr16:31487435 chr16:31487442 nonsynonymous SNV 0.979 5 28 hm5C_associated_SNPs_22798 0 0 0 0 1 TGFB1I1 chr16:31487506 5'GT 31487506 Upstream 65bp
chr5 149755836 149755836 1 + C T GBM 149755829 + 149755809 149755849 41 CCAGAGACCAGCAGAGGATTCTTCAAGCAGTGAGGAATCAG CCAGAGACCAGCAGAGGATTCTTCAAGTAGTGAGGAATCAG < 41bp 1 0.340960153440196 1 0.245932757854462 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149755829 chr5:149755836 synonymous SNV . 0 28 hm5C_associated_SNPs_22799 0 0 1 0 1 TCOF1 chr5:149755893 5'GT 149755893 Upstream 58bp
chr5 149755836 149755836 1 + C T GBM 149755847 + 149755827 149755867 41 TTCTTCAAGCAGTGAGGAATCAGATAGTGAGGAAGAGAAGA TTCTTCAAGTAGTGAGGAATCAGATAGTGAGGAAGAGAAGA < 41bp 1 0.345270904979112 1 0.473303407430649 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149755847 chr5:149755836 synonymous SNV . 0 10 hm5C_associated_SNPs_22800 0 0 1 0 1 TCOF1 chr5:149755893 5'GT 149755893 Upstream 58bp
chr17 41585024 41585024 1 + C A GBM 41585007 + 41584987 41585027 41 GATCATCATGTTGGACGAGGCACATGAGAGGACAATTCACA GATCATCATGTTGGACGAGGCACATGAGAGGACAATTAACA < 41bp 1 0.279566889452708 1 0.197767227888107 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41585007 chr17:41585024 nonsynonymous SNV 0.996 1 38 hm5C_associated_SNPs_22801 0 0 1 0 1 DHX8 chr17:41585056 5'GT 41585056 Upstream 33bp
chr19 18232701 18232701 1 + G C GBM 18232699 + 18232679 18232719 41 TAGTCCTCGGAATTTCTCGGCTGCCTCTGCCCTAAATTTCC TAGTCCTCGGAATTTCTCGGCTCCCTCTGCCCTAAATTTCC < 41bp 1 0.057857357547356 1 0.138559341430664 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST3 ENSG00000099308 CDS Human protein_coding chr19:18232699 chr19:18232701 nonsynonymous SNV 0.184 0 23 hm5C_associated_SNPs_22802 0 0 1 0 2 MAST3 chr19:18232660 3'AG 18232660 Downstream 42bp
chr19 18232701 18232701 1 + G C GBM 18232699 + 18232679 18232719 41 TAGTCCTCGGAATTTCTCGGCTGCCTCTGCCCTAAATTTCC TAGTCCTCGGAATTTCTCGGCTCCCTCTGCCCTAAATTTCC < 41bp 1 0.057857357547356 1 0.138559341430664 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST3 ENSG00000099308 CDS Human protein_coding chr19:18232699 chr19:18232701 nonsynonymous SNV 0.184 0 23 hm5C_associated_SNPs_22802 0 0 1 0 2 MAST3 chr19:18232732 5'GT 18232732 Upstream 32bp
chr11 118950008 118950008 1 + C A GBM 118949993 + 118949973 118950013 41 ACCCGTATCCGCCAGGAGATCCAAGAGCTCAAGGCCAGGTA ACCCGTATCCGCCAGGAGATCCAAGAGCTCAAGGCAAGGTA < 41bp 1 0.420285664660665 1 0.323863983154297 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VPS11 ENSG00000160695 CDS Human protein_coding chr11:118949993 chr11:118950008 synonymous SNV . 0 36 hm5C_associated_SNPs_22803 0 0 1 0 1 VPS11 chr11:118950010 5'GT 118950010 Upstream 3bp
chr19 34292103 34292103 1 + C T GBM 34292109 + 34292089 34292129 41 CCGGCTGTCTCTCACCCGGTCGCCTGTGTCTCCCCTGGCTG CCGGCTGTCTCTCATCCGGTCGCCTGTGTCTCCCCTGGCTG < 41bp 1 0.590769574764334 1 0.0612784922122955 experiment 0.818460850471331 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34292109 chr19:34292103 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_22804 0 0 1 0 1 KCTD15 chr19:34292072 3'AG 34292072 Downstream 32bp
chr19 50906832 50906832 1 + T C GBM 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CGTACCTCACCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT < 41bp 1 0.0779431883126172 1 0.150748312473297 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906832 nonsynonymous SNV 0.999 1 10 hm5C_associated_SNPs_22808 0 0 1 0 2 POLD1 chr19:50906750 3'AG 50906750 Downstream 83bp
chr19 50906832 50906832 1 + T C GBM 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CGTACCTCACCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT < 41bp 1 0.0779431883126172 1 0.150748312473297 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906832 nonsynonymous SNV 0.999 1 10 hm5C_associated_SNPs_22808 0 0 1 0 2 POLD1 chr19:50906854 5'GT 50906854 Upstream 23bp
chr19 50906832 50906832 1 + T C GBM 50906851 + 50906831 50906871 41 ATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCTGGGCAGGT ACCTCTCGGGCCCAGACCCTCAAGGTGAGGGCTGGGCAGGT < 41bp 1 0.685862276313499 1 0.889750182628632 experiment 0.628275447373001 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906851 chr19:50906832 nonsynonymous SNV 0.999 1 2 hm5C_associated_SNPs_22809 0 0 1 0 2 POLD1 chr19:50906750 3'AG 50906750 Downstream 83bp
chr19 50906832 50906832 1 + T C GBM 50906851 + 50906831 50906871 41 ATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCTGGGCAGGT ACCTCTCGGGCCCAGACCCTCAAGGTGAGGGCTGGGCAGGT < 41bp 1 0.685862276313499 1 0.889750182628632 experiment 0.628275447373001 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906851 chr19:50906832 nonsynonymous SNV 0.999 1 2 hm5C_associated_SNPs_22809 0 0 1 0 2 POLD1 chr19:50906854 5'GT 50906854 Upstream 23bp
chr5 10387160 10387160 1 + C G GBM 10387150 + 10387130 10387170 41 CTGGCTCCGTGAGCTCACTACTGACGCTGCCATTAGATATG CTGGCTCCGTGAGCTCACTACTGACGCTGCGATTAGATATG < 41bp 1 0.249733280473604 1 0.116332441568375 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10387150 chr5:10387160 nonsynonymous SNV 0.998 4 31 hm5C_associated_SNPs_22810 0 0 1 0 2 MARCH6 chr5:10387106 3'AG 10387106 Downstream 55bp
chr5 10387160 10387160 1 + C G GBM 10387150 + 10387130 10387170 41 CTGGCTCCGTGAGCTCACTACTGACGCTGCCATTAGATATG CTGGCTCCGTGAGCTCACTACTGACGCTGCGATTAGATATG < 41bp 1 0.249733280473604 1 0.116332441568375 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10387150 chr5:10387160 nonsynonymous SNV 0.998 4 31 hm5C_associated_SNPs_22810 0 0 1 0 2 MARCH6 chr5:10387178 5'GT 10387178 Upstream 19bp
chr14 104135871 104135871 1 + C A GBM 104135852 + 104135832 104135872 41 GTGTTTTTCCATTTAGGGATCAGAATAAATACAAAGATGCA GTGTTTTTCCATTTAGGGATCAGAATAAATACAAAGATGAA < 41bp 1 0.254027273343639 1 0.620356917381287 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104135852 chr14:104135871 nonsynonymous SNV 0.985 5 40 hm5C_associated_SNPs_22811 0 0 1 0 2 KLC1 chr14:104135848 3'AG 104135848 Downstream 24bp
chr14 104135871 104135871 1 + C A GBM 104135852 + 104135832 104135872 41 GTGTTTTTCCATTTAGGGATCAGAATAAATACAAAGATGCA GTGTTTTTCCATTTAGGGATCAGAATAAATACAAAGATGAA < 41bp 1 0.254027273343639 1 0.620356917381287 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104135852 chr14:104135871 nonsynonymous SNV 0.985 5 40 hm5C_associated_SNPs_22811 0 0 1 0 2 KLC1 chr14:104135935 5'GT 104135935 Upstream 65bp
chr1 10425617 10425617 1 + G C GBM 10425628 + 10425608 10425648 41 ACTACCTTTGAAAGCGCCATCACACCTAGCGAGAGCAGTGG ACTACCTTTCAAAGCGCCATCACACCTAGCGAGAGCAGTGG < 41bp 1 0.0900305786367085 1 0.0934891998767853 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10425628 chr1:10425617 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_22812 0 0 0 0 1 KIF1B chr1:10425706 5'GT 10425706 Upstream 90bp
chr19 50728931 50728931 1 + A G GBM 50728929 + 50728909 50728949 41 TGAAGAATGACAACTCCTCCCGATTCGTGAGTGCCAGGGGT TGAAGAATGACAACTCCTCCCGGTTCGTGAGTGCCAGGGGT < 41bp 1 0.141658568203333 1 0.402524471282959 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50728929 chr19:50728931 synonymous SNV . 0 23 hm5C_associated_SNPs_22813 0 0 0 0 1 MYH14 chr19:50728934 5'GT 50728934 Upstream 4bp
chr1 27269376 27269376 1 + C A GBM 27269371 + 27269351 27269391 41 GCCCTATGCAGCTGGCGGTCCCTTTCTGTGTGAACTTCCGG GCCCTATGCAGCTGGCGGTCCCTTTATGTGTGAACTTCCGG < 41bp 1 0.0159399601073785 1 0.0124955475330353 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUDC ENSG00000090273 CDS Human protein_coding chr1:27269371 chr1:27269376 nonsynonymous SNV 0.271 1 26 hm5C_associated_SNPs_22814 0 0 1 0 1 NUDC chr1:27269362 3'AG 27269362 Downstream 15bp
chr12 8196362 8196362 1 + T C GBM 8196351 + 8196331 8196371 41 TTTCCCGAAAGAGAAGACACCCTCCAGATGATGATGTAAGT TTTCCCGAAAGAGAAGACACCCTCCAGATGACGATGTAAGT < 41bp 1 0.0166196331494138 1 0.0477424263954163 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXJ2 ENSG00000065970 CDS Human protein_coding chr12:8196351 chr12:8196362 synonymous SNV . 0 32 hm5C_associated_SNPs_22815 0 0 0 0 1 FOXJ2 chr12:8196365 5'GT 8196365 Upstream 4bp
chr12 53412635 53412635 1 + G T GBM 53412624 + 53412604 53412644 41 CGATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCA CGATGACGATGTGTATAGGGCGCCTCCAATTTACCGTTCCA < 41bp 1 0.378001948952907 1 0.0358216762542725 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412624 chr12:53412635 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_22817 0 0 1 0 1 EIF4B chr12:53412582 3'AG 53412582 Downstream 54bp
chr12 53412635 53412635 1 + G T GBM 53412626 + 53412606 53412646 41 ATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATC ATGACGATGTGTATAGGGCGCCTCCAATTTACCGTTCCATC < 41bp 1 0.0453645548221381 1 0.03049236536026 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412626 chr12:53412635 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_22818 0 0 1 0 1 EIF4B chr12:53412582 3'AG 53412582 Downstream 54bp
chr15 39876521 39876521 1 + G T GBM 39876541 + 39876521 39876561 41 GGCCAATGAGCTGAGGCGGCCTCCCCTATGCTATCACAACG TGCCAATGAGCTGAGGCGGCCTCCCCTATGCTATCACAACG < 41bp 1 0.153948090061367 1 0.261841237545013 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control THBS1 ENSG00000137801 CDS Human protein_coding chr15:39876541 chr15:39876521 nonsynonymous SNV 0.996 1 1 hm5C_associated_SNPs_22819 0 0 1 0 1 THBS1 chr15:39876501 3'AG 39876501 Downstream 21bp
chr2 113325658 113325658 1 + C T GBM 113325644 + 113325624 113325664 41 ATTGTTCCTTTTTACCACTCCTTGTAGACTGGTACGGCCTG ATTGTTCCTTTTTACCACTCCTTGTAGACTGGTATGGCCTG < 41bp 1 0.196377435822389 1 0.258165597915649 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113325644 chr2:113325658 nonsynonymous SNV 0.977 4 35 hm5C_associated_SNPs_22821 0 0 1 0 1 POLR1B chr2:113325714 5'GT 113325714 Upstream 57bp
chr6 44107303 44107303 1 + C T GBM 44107298 + 44107278 44107318 41 TGCTGGTGGTTGTGGGCGTCCTCTCCGTAGGCATCGTGCTG TGCTGGTGGTTGTGGGCGTCCTCTCTGTAGGCATCGTGCTG < 41bp 1 0.414153490942273 1 0.197348058223724 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44107298 chr6:44107303 synonymous SNV . 0 26 hm5C_associated_SNPs_22823 0 0 1 0 2 TMEM63B chr6:44107204 3'AG 44107204 Downstream 100bp
chr6 44107303 44107303 1 + C T GBM 44107298 + 44107278 44107318 41 TGCTGGTGGTTGTGGGCGTCCTCTCCGTAGGCATCGTGCTG TGCTGGTGGTTGTGGGCGTCCTCTCTGTAGGCATCGTGCTG < 41bp 1 0.414153490942273 1 0.197348058223724 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44107298 chr6:44107303 synonymous SNV . 0 26 hm5C_associated_SNPs_22823 0 0 1 0 2 TMEM63B chr6:44107346 5'GT 44107346 Upstream 44bp
chr6 44107303 44107303 1 + C T GBM 44107300 + 44107280 44107320 41 CTGGTGGTTGTGGGCGTCCTCTCCGTAGGCATCGTGCTGCC CTGGTGGTTGTGGGCGTCCTCTCTGTAGGCATCGTGCTGCC < 41bp 1 0.794153249011225 1 0.536719918251038 experiment 0.411693501977551 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44107300 chr6:44107303 synonymous SNV . 0 24 hm5C_associated_SNPs_22824 0 0 1 0 2 TMEM63B chr6:44107204 3'AG 44107204 Downstream 100bp
chr6 44107303 44107303 1 + C T GBM 44107300 + 44107280 44107320 41 CTGGTGGTTGTGGGCGTCCTCTCCGTAGGCATCGTGCTGCC CTGGTGGTTGTGGGCGTCCTCTCTGTAGGCATCGTGCTGCC < 41bp 1 0.794153249011225 1 0.536719918251038 experiment 0.411693501977551 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44107300 chr6:44107303 synonymous SNV . 0 24 hm5C_associated_SNPs_22824 0 0 1 0 2 TMEM63B chr6:44107346 5'GT 44107346 Upstream 44bp
chr19 41128384 41128384 1 + G A GBM 41128394 + 41128374 41128414 41 CCCCTGCCCCGCCGACCCAGCACACCTAGGCAGGGCCCTGT CCCCTGCCCCACCGACCCAGCACACCTAGGCAGGGCCCTGT < 41bp 1 0.18641428568474 1 0.0317881405353546 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41128394 chr19:41128384 nonsynonymous SNV 0.052 2 11 hm5C_associated_SNPs_22825 0 0 1 0 1 LTBP4 chr19:41128306 3'AG 41128306 Downstream 79bp
chr2 119732140 119732140 1 + G A GBM 119732128 + 119732108 119732148 41 CCCCAAGGCCCACCGGGAGTCAAGGGAGAGGCGGGTGAGTA CCCCAAGGCCCACCGGGAGTCAAGGGAGAGGCAGGTGAGTA < 41bp 1 0.798465695425731 1 0.814805865287781 experiment 0.403068609148537 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MARCO ENSG00000019169 CDS Human protein_coding chr2:119732128 chr2:119732140 synonymous SNV . 0 33 hm5C_associated_SNPs_22827 0 0 0 0 2 MARCO chr2:119732097 3'AG 119732097 Downstream 44bp
chr2 119732140 119732140 1 + G A GBM 119732128 + 119732108 119732148 41 CCCCAAGGCCCACCGGGAGTCAAGGGAGAGGCGGGTGAGTA CCCCAAGGCCCACCGGGAGTCAAGGGAGAGGCAGGTGAGTA < 41bp 1 0.798465695425731 1 0.814805865287781 experiment 0.403068609148537 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MARCO ENSG00000019169 CDS Human protein_coding chr2:119732128 chr2:119732140 synonymous SNV . 0 33 hm5C_associated_SNPs_22827 0 0 0 0 2 MARCO chr2:119732141 5'GT 119732141 Upstream 2bp
chr6 33633622 33633622 1 + C T GBM 33633637 + 33633617 33633657 41 TCATCCAGCTGCTGGAAGACCTGGTGTTCTTTGTCAGCGAT TCATCTAGCTGCTGGAAGACCTGGTGTTCTTTGTCAGCGAT < 41bp 1 0.495210378049566 1 0.19605627655983 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33633637 chr6:33633622 stopgain 1.000 1 6 hm5C_associated_SNPs_22828 0 0 1 0 1 ITPR3 chr6:33633612 3'AG 33633612 Downstream 11bp
chr22 44372062 44372062 1 + C T GBM 44372056 + 44372036 44372076 41 CGGACATTCACTGAAATCATCTCTTTCGGTAACGGTTTCTC CGGACATTCACTGAAATCATCTCTTTTGGTAACGGTTTCTC < 41bp 1 0.157399290203097 1 0.244761615991592 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44372056 chr22:44372062 nonsynonymous SNV 0.993 2 27 hm5C_associated_SNPs_22829 0 0 1 0 1 SAMM50 chr22:44372063 5'GT 44372063 Upstream 2bp
chr22 44372062 44372062 1 + C T GBM 44372058 + 44372038 44372078 41 GACATTCACTGAAATCATCTCTTTCGGTAACGGTTTCTCTT GACATTCACTGAAATCATCTCTTTTGGTAACGGTTTCTCTT < 41bp 1 0.0540644895666157 1 0.145290940999985 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44372058 chr22:44372062 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_22830 0 0 1 0 1 SAMM50 chr22:44372063 5'GT 44372063 Upstream 2bp
chr5 912022 912022 1 + G A GBM 912029 + 912009 912049 41 CGTGGCCTTCGTGGACAGGGCTGACATCAAGCAGTACATTG CGTGGCCTTCGTGAACAGGGCTGACATCAAGCAGTACATTG < 41bp 1 0.315535807125981 1 0.0256483554840088 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:912029 chr5:912022 nonsynonymous SNV 0.972 5 14 hm5C_associated_SNPs_22840 0 0 1 0 2 TRIP13 chr5:911958 3'AG 911958 Downstream 65bp
chr5 912022 912022 1 + G A GBM 912029 + 912009 912049 41 CGTGGCCTTCGTGGACAGGGCTGACATCAAGCAGTACATTG CGTGGCCTTCGTGAACAGGGCTGACATCAAGCAGTACATTG < 41bp 1 0.315535807125981 1 0.0256483554840088 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:912029 chr5:912022 nonsynonymous SNV 0.972 5 14 hm5C_associated_SNPs_22840 0 0 1 0 2 TRIP13 chr5:912111 5'GT 912111 Upstream 90bp
chr19 55817715 55817715 1 + C A GBM 55817719 + 55817699 55817739 41 TCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTCCTCT TCCAAAAGCCCGTCCGATTCCAGGTGGACATCAGCTCCTCT < 41bp 1 0.754035681619991 1 0.893652200698853 experiment 0.491928636760019 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55817719 chr19:55817715 synonymous SNV . 0 17 hm5C_associated_SNPs_22844 0 0 1 0 1 BRSK1 chr19:55817620 3'AG 55817620 Downstream 96bp
chr15 74917256 74917256 1 + G A GBM 74917240 + 74917220 74917260 41 TCTGTTTCCTTCCCGGGTACCAGAGGGAAGTCTCAGGTTGC TCTGTTTCCTTCCCGGGTACCAGAGGGAAGTCTCAGATTGC < 41bp 1 0.315960124876826 1 0.85140073299408 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLK3 ENSG00000179335 CDS Human other chr15:74917240 chr15:74917256 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_22845 0 0 1 0 2 CLK3 chr15:74917243 3'AG 74917243 Downstream 14bp
chr15 74917256 74917256 1 + G A GBM 74917240 + 74917220 74917260 41 TCTGTTTCCTTCCCGGGTACCAGAGGGAAGTCTCAGGTTGC TCTGTTTCCTTCCCGGGTACCAGAGGGAAGTCTCAGATTGC < 41bp 1 0.315960124876826 1 0.85140073299408 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLK3 ENSG00000179335 CDS Human protein_coding chr15:74917240 chr15:74917256 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_22845 0 0 1 0 2 CLK3 chr15:74917245 3'AG 74917245 Downstream 12bp
chr11 67378032 67378032 1 + G A GBM 67378025 + 67378005 67378045 41 AAGCCCCGCCTGAAGCCCCCCTTCCCCGCAGACGTGGGTAA AAGCCCCGCCTGAAGCCCCCCTTCCCCACAGACGTGGGTAA < 41bp 1 0.108423700232786 1 0.339995443820953 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67378025 chr11:67378032 nonsynonymous SNV 0.145 5 28 hm5C_associated_SNPs_22846 0 0 1 0 1 NDUFV1 chr11:67378041 5'GT 67378041 Upstream 10bp
chr15 57526304 57526304 1 + C A GBM 57526295 + 57526275 57526315 41 AGGTGATGCACTTGGAAAGGCTTTGGCATCTGTGAGTATTG AGGTGATGCACTTGGAAAGGCTTTGGCATATGTGAGTATTG < 41bp 1 0.120473619915855 1 0.0500891804695129 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57526295 chr15:57526304 nonsynonymous SNV 0.998 4 30 hm5C_associated_SNPs_22847 0 0 1 0 2 TCF12 chr15:57526241 3'AG 57526241 Downstream 64bp
chr15 57526304 57526304 1 + C A GBM 57526295 + 57526275 57526315 41 AGGTGATGCACTTGGAAAGGCTTTGGCATCTGTGAGTATTG AGGTGATGCACTTGGAAAGGCTTTGGCATATGTGAGTATTG < 41bp 1 0.120473619915855 1 0.0500891804695129 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57526295 chr15:57526304 nonsynonymous SNV 0.998 4 30 hm5C_associated_SNPs_22847 0 0 1 0 2 TCF12 chr15:57526305 5'GT 57526305 Upstream 2bp
chr19 50027849 50027849 1 + G A GBM 50027862 + 50027842 50027882 41 ACCCTCCGGAGCTGCAACTTCGGTTCCTGCGGAATGGGCTG ACCCTCCAGAGCTGCAACTTCGGTTCCTGCGGAATGGGCTG < 41bp 1 0.475641410348139 1 0.746031582355499 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCGRT ENSG00000104870 CDS Human protein_coding chr19:50027862 chr19:50027849 synonymous SNV . 0 8 hm5C_associated_SNPs_22848 0 0 1 0 1 FCGRT chr19:50027764 3'AG 50027764 Downstream 86bp
chr5 54640967 54640967 1 + C T GBM 54640986 + 54640966 54641006 41 TCGAGATGCAGGTGATTTGGCCAAAGGAGACCAGAAAGGGC TTGAGATGCAGGTGATTTGGCCAAAGGAGACCAGAAAGGGC < 41bp 1 0.497280450673027 1 0.641986668109894 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54640986 chr5:54640967 stopgain 1.000 1 2 hm5C_associated_SNPs_22850 0 0 1 0 1 SKIV2L2 chr5:54641024 5'GT 54641024 Upstream 58bp
chr1 206902132 206902132 1 + G A GBM 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCCGCACATCGTACGAATCGTGGATGTGTACGAGAATCT < 41bp 1 0.602220038091721 1 0.338716685771942 experiment 0.795559923816557 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902132 synonymous SNV . 0 18 hm5C_associated_SNPs_22854 0 0 1 0 2 MAPKAPK2 chr1:206902055 3'AG 206902055 Downstream 78bp
chr1 206902132 206902132 1 + G A GBM 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCCGCACATCGTACGAATCGTGGATGTGTACGAGAATCT < 41bp 1 0.602220038091721 1 0.338716685771942 experiment 0.795559923816557 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902132 synonymous SNV . 0 18 hm5C_associated_SNPs_22854 0 0 1 0 2 MAPKAPK2 chr1:206902194 5'GT 206902194 Upstream 63bp
chr9 95869973 95869973 1 + C T GBM 95869992 + 95869972 95870012 41 CCGCCTGGTGCAGGACACGCCTTTCCTGACAGGCCATGGGC CTGCCTGGTGCAGGACACGCCTTTCCTGACAGGCCATGGGC < 41bp 1 0.0542075868233845 1 0.0534083247184753 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARD19 ENSG00000165233 CDS Human protein_coding chr9:95869992 chr9:95869973 nonsynonymous SNV 0.998 4 2 hm5C_associated_SNPs_22855 0 0 1 0 1 CARD19 chr9:95869956 3'AG 95869956 Downstream 18bp
chr17 79668136 79668136 1 + C T GBM 79668148 + 79668128 79668168 41 CTACATCGCGGGGCAGCAGCCCATGTACCAGCAGGTGAGCC CTACATCGTGGGGCAGCAGCCCATGTACCAGCAGGTGAGCC < 41bp 1 0.223038261872852 1 0.286565184593201 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79668148 chr17:79668136 nonsynonymous SNV 0.258 0 9 hm5C_associated_SNPs_22856 0 0 1 0 2 HGS chr17:79668075 3'AG 79668075 Downstream 62bp
chr17 79668136 79668136 1 + C T GBM 79668148 + 79668128 79668168 41 CTACATCGCGGGGCAGCAGCCCATGTACCAGCAGGTGAGCC CTACATCGTGGGGCAGCAGCCCATGTACCAGCAGGTGAGCC < 41bp 1 0.223038261872852 1 0.286565184593201 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79668148 chr17:79668136 nonsynonymous SNV 0.258 0 9 hm5C_associated_SNPs_22856 0 0 1 0 2 HGS chr17:79668161 5'GT 79668161 Upstream 26bp
chr12 95868051 95868051 1 + G T GBM 95868059 + 95868039 95868079 41 CTCTACGGCTGAGGAAGCAGCCAAGAAAAAAAGACGAAAGA CTCTACGGCTGATGAAGCAGCCAAGAAAAAAAGACGAAAGA < 41bp 1 0.279349601110993 1 0.508952021598816 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95868059 chr12:95868051 nonsynonymous SNV 0.980 2 13 hm5C_associated_SNPs_22857 0 0 1 0 1 METAP2 chr12:95868106 5'GT 95868106 Upstream 56bp
chr19 50338286 50338286 1 + G A GBM 50338268 + 50338248 50338288 41 CTGCGTGCACTTCCCCCACACGGCGCCCTGTGAGGTGCGCG CTGCGTGCACTTCCCCCACACGGCGCCCTGTGAGGTGCACG < 41bp 1 0.558464831951727 1 0.752507150173187 experiment 0.883070336096545 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50338268 chr19:50338286 nonsynonymous SNV 0.802 5 39 hm5C_associated_SNPs_22858 0 0 0 0 1 MED25 chr19:50338243 3'AG 50338243 Downstream 44bp
chr14 23070604 23070604 1 + C T GBM 23070600 + 23070580 23070620 41 GCTGGCTGAGTAGCTGGCTGCCCACGTGGCGCCCCACTTCC GCTGGCTGAGTAGCTGGCTGCCCATGTGGCGCCCCACTTCC < 41bp 1 0.392851597541633 1 0.152500182390213 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23070600 chr14:23070604 nonsynonymous SNV 0.884 2 25 hm5C_associated_SNPs_22859 0 0 1 0 1 ABHD4 chr14:23070572 3'AG 23070572 Downstream 33bp
chr1 183083807 183083807 1 + G A GBM 183083799 + 183083779 183083819 41 TGTGAGAGGTGCCGAGAGAACTTCTTCCGCCTTGGCAACAA TGTGAGAGGTGCCGAGAGAACTTCTTCCACCTTGGCAACAA < 41bp 1 0.418565000395794 1 0.160152912139893 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183083799 chr1:183083807 nonsynonymous SNV 0.993 4 29 hm5C_associated_SNPs_22860 0 0 1 0 1 LAMC1 chr1:183083854 5'GT 183083854 Upstream 48bp
chr1 206902127 206902127 1 + G A GBM 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCCGCACATCATACGGATCGTGGATGTGTACGAGAATCT < 41bp 1 0.418005058729851 1 0.219996631145477 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902127 nonsynonymous SNV 0.670 2 13 hm5C_associated_SNPs_22861 0 0 1 0 2 MAPKAPK2 chr1:206902055 3'AG 206902055 Downstream 73bp
chr1 206902127 206902127 1 + G A GBM 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCCGCACATCATACGGATCGTGGATGTGTACGAGAATCT < 41bp 1 0.418005058729851 1 0.219996631145477 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902127 nonsynonymous SNV 0.670 2 13 hm5C_associated_SNPs_22861 0 0 1 0 2 MAPKAPK2 chr1:206902194 5'GT 206902194 Upstream 68bp
chr3 50255188 50255188 1 + G T GBM 50255191 + 50255171 50255211 41 AACTTCAGCCACGTGGAGATCGTGAAGGAGAAGGTGCAGCT AACTTCAGCCACGTGGATATCGTGAAGGAGAAGGTGCAGCT < 41bp 1 0.782600547303968 1 0.566436648368835 experiment 0.434798905392064 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50255191 chr3:50255188 . 0.010 0 18 hm5C_associated_SNPs_22862 0 0 0 0 2 SLC38A3 chr3:50255108 3'AG 50255108 Downstream 81bp
chr3 50255188 50255188 1 + G T GBM 50255191 + 50255171 50255211 41 AACTTCAGCCACGTGGAGATCGTGAAGGAGAAGGTGCAGCT AACTTCAGCCACGTGGATATCGTGAAGGAGAAGGTGCAGCT < 41bp 1 0.782600547303968 1 0.566436648368835 experiment 0.434798905392064 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50255191 chr3:50255188 . 0.010 0 18 hm5C_associated_SNPs_22862 0 0 0 0 2 SLC38A3 chr3:50255272 5'GT 50255272 Upstream 85bp
chr20 23350291 23350291 1 + C T GBM 23350279 + 23350259 23350299 41 TTCACCCAGCTCAACGCCCTCCAGCGCCACCGCCGCATCCA TTCACCCAGCTCAACGCCCTCCAGCGCCACCGTCGCATCCA < 41bp 1 0.470570606550557 1 0.669760227203369 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350279 chr20:23350291 synonymous SNV . 0 33 hm5C_associated_SNPs_22863 0 0 0 0 2 GZF1 chr20:23350221 3'AG 23350221 Downstream 71bp
chr20 23350291 23350291 1 + C T GBM 23350279 + 23350259 23350299 41 TTCACCCAGCTCAACGCCCTCCAGCGCCACCGCCGCATCCA TTCACCCAGCTCAACGCCCTCCAGCGCCACCGTCGCATCCA < 41bp 1 0.470570606550557 1 0.669760227203369 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350279 chr20:23350291 synonymous SNV . 0 33 hm5C_associated_SNPs_22863 0 0 0 0 2 GZF1 chr20:23350378 5'GT 23350378 Upstream 88bp
chr19 39979214 39979214 1 + G A GBM 39979223 + 39979203 39979243 41 ACGTGCGAACCGTGCTGGAGCACTATGCCCTGGAGGATGAC ACGTGCGAACCATGCTGGAGCACTATGCCCTGGAGGATGAC < 41bp 1 0.391509701725005 1 0.0630949437618256 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TIMM50 ENSG00000105197 CDS Human protein_coding chr19:39979223 chr19:39979214 nonsynonymous SNV 0.946 3 12 hm5C_associated_SNPs_22864 0 0 1 0 2 TIMM50 chr19:39979179 3'AG 39979179 Downstream 36bp
chr19 39979214 39979214 1 + G A GBM 39979223 + 39979203 39979243 41 ACGTGCGAACCGTGCTGGAGCACTATGCCCTGGAGGATGAC ACGTGCGAACCATGCTGGAGCACTATGCCCTGGAGGATGAC < 41bp 1 0.391509701725005 1 0.0630949437618256 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TIMM50 ENSG00000105197 CDS Human protein_coding chr19:39979223 chr19:39979214 nonsynonymous SNV 0.946 3 12 hm5C_associated_SNPs_22864 0 0 1 0 2 TIMM50 chr19:39979285 5'GT 39979285 Upstream 72bp
chr17 1634184 1634184 1 + G A GBM 1634199 + 1634179 1634219 41 CGCCCGCCTGTATGGGGAGCCTGTCCTCACCTACCAGTACC CGCCCACCTGTATGGGGAGCCTGTCCTCACCTACCAGTACC < 41bp 1 0.100093238258645 1 0.0833939909934998 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1634199 chr17:1634184 nonsynonymous SNV 0.693 0 6 hm5C_associated_SNPs_22865 0 0 1 0 1 WDR81 chr17:1634239 5'GT 1634239 Upstream 56bp
chr18 46284697 46284697 1 + C T GBM 46284696 + 46284676 46284716 41 AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGCGG AACGTAAAGACAGTATTCTTCTCGAGCGCATCGGGGAGCGG < 41bp 1 0.741154990503141 1 0.717924356460571 experiment 0.517690018993719 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284696 chr18:46284697 nonsynonymous SNV 0.038 1 22 hm5C_associated_SNPs_22866 0 0 0 0 2 CTIF chr18:46284776 5'GT 46284776 Upstream 80bp
chr18 46284697 46284697 1 + C T GBM 46284696 + 46284676 46284716 41 AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGCGG AACGTAAAGACAGTATTCTTCTCGAGCGCATCGGGGAGCGG < 41bp 1 0.741154990503141 1 0.717924356460571 experiment 0.517690018993719 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284696 chr18:46284697 nonsynonymous SNV 0.038 1 22 hm5C_associated_SNPs_22866 0 0 0 0 2 CTIF chr18:46284782 5'GT 46284782 Upstream 86bp
chr19 42839498 42839498 1 + C T GBM 42839497 + 42839477 42839517 41 CCTCGTCCTATACAACTTCTCCGCCAACACCTGGGAGTCTT CCTCGTCCTATACAACTTCTCTGCCAACACCTGGGAGTCTT < 41bp 1 0.250440772014992 1 0.340606391429901 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42839497 chr19:42839498 synonymous SNV . 0 22 hm5C_associated_SNPs_22867 0 0 1 0 2 MEGF8 chr19:42839449 3'AG 42839449 Downstream 50bp
chr19 42839498 42839498 1 + C T GBM 42839497 + 42839477 42839517 41 CCTCGTCCTATACAACTTCTCCGCCAACACCTGGGAGTCTT CCTCGTCCTATACAACTTCTCTGCCAACACCTGGGAGTCTT < 41bp 1 0.250440772014992 1 0.340606391429901 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42839497 chr19:42839498 synonymous SNV . 0 22 hm5C_associated_SNPs_22867 0 0 1 0 2 MEGF8 chr19:42839537 5'GT 42839537 Upstream 40bp
chr12 31242059 31242059 1 + C T GBM 31242078 + 31242058 31242098 41 TCGGCTGGTCTCCCTTGGCTCCCGGCAGGTAAACAGTAGCC TTGGCTGGTCTCCCTTGGCTCCCGGCAGGTAAACAGTAGCC < 41bp 1 0.449885330038308 1 0.288096606731415 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31242078 chr12:31242059 nonsynonymous SNV 0.001 4 2 hm5C_associated_SNPs_22868 0 0 1 0 1 DDX11 chr12:31242085 5'GT 31242085 Upstream 27bp
chr5 177019589 177019589 1 + G A GBM 177019580 + 177019560 177019600 41 CCCTGCTTCCCTCAAGGAAACTACCGGACGCAGCTGTATGA CCCTGCTTCCCTCAAGGAAACTACCGGACACAGCTGTATGA < 41bp 1 0.363006117178649 1 0.0874879062175751 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019580 chr5:177019589 synonymous SNV . 0 30 hm5C_associated_SNPs_22870 0 0 1 0 2 TMED9 chr5:177019576 3'AG 177019576 Downstream 14bp
chr5 177019589 177019589 1 + G A GBM 177019580 + 177019560 177019600 41 CCCTGCTTCCCTCAAGGAAACTACCGGACGCAGCTGTATGA CCCTGCTTCCCTCAAGGAAACTACCGGACACAGCTGTATGA < 41bp 1 0.363006117178649 1 0.0874879062175751 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019580 chr5:177019589 synonymous SNV . 0 30 hm5C_associated_SNPs_22870 0 0 1 0 2 TMED9 chr5:177019676 5'GT 177019676 Upstream 88bp
chr5 177019589 177019589 1 + G A GBM 177019588 + 177019568 177019608 41 CCCTCAAGGAAACTACCGGACGCAGCTGTATGACAAGCAGC CCCTCAAGGAAACTACCGGACACAGCTGTATGACAAGCAGC < 41bp 1 0.525360589937378 1 0.137803882360458 experiment 0.949278820125244 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019588 chr5:177019589 synonymous SNV . 0 22 hm5C_associated_SNPs_22871 0 0 1 0 2 TMED9 chr5:177019576 3'AG 177019576 Downstream 14bp
chr5 177019589 177019589 1 + G A GBM 177019588 + 177019568 177019608 41 CCCTCAAGGAAACTACCGGACGCAGCTGTATGACAAGCAGC CCCTCAAGGAAACTACCGGACACAGCTGTATGACAAGCAGC < 41bp 1 0.525360589937378 1 0.137803882360458 experiment 0.949278820125244 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019588 chr5:177019589 synonymous SNV . 0 22 hm5C_associated_SNPs_22871 0 0 1 0 2 TMED9 chr5:177019676 5'GT 177019676 Upstream 88bp
chr5 177019589 177019589 1 + G A GBM 177019593 + 177019573 177019613 41 AAGGAAACTACCGGACGCAGCTGTATGACAAGCAGCGGGAG AAGGAAACTACCGGACACAGCTGTATGACAAGCAGCGGGAG < 41bp 1 0.758336373305663 1 0.598385095596313 experiment 0.483327253388673 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019593 chr5:177019589 synonymous SNV . 0 17 hm5C_associated_SNPs_22872 0 0 1 0 2 TMED9 chr5:177019576 3'AG 177019576 Downstream 14bp
chr5 177019589 177019589 1 + G A GBM 177019593 + 177019573 177019613 41 AAGGAAACTACCGGACGCAGCTGTATGACAAGCAGCGGGAG AAGGAAACTACCGGACACAGCTGTATGACAAGCAGCGGGAG < 41bp 1 0.758336373305663 1 0.598385095596313 experiment 0.483327253388673 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019593 chr5:177019589 synonymous SNV . 0 17 hm5C_associated_SNPs_22872 0 0 1 0 2 TMED9 chr5:177019676 5'GT 177019676 Upstream 88bp
chr5 177019589 177019589 1 + G A GBM 177019601 + 177019581 177019621 41 TACCGGACGCAGCTGTATGACAAGCAGCGGGAGGAGTACCA TACCGGACACAGCTGTATGACAAGCAGCGGGAGGAGTACCA < 41bp 1 0.514517024476252 1 0.495074301958084 experiment 0.970965951047496 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019601 chr5:177019589 synonymous SNV . 0 9 hm5C_associated_SNPs_22873 0 0 1 0 2 TMED9 chr5:177019576 3'AG 177019576 Downstream 14bp
chr5 177019589 177019589 1 + G A GBM 177019601 + 177019581 177019621 41 TACCGGACGCAGCTGTATGACAAGCAGCGGGAGGAGTACCA TACCGGACACAGCTGTATGACAAGCAGCGGGAGGAGTACCA < 41bp 1 0.514517024476252 1 0.495074301958084 experiment 0.970965951047496 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019601 chr5:177019589 synonymous SNV . 0 9 hm5C_associated_SNPs_22873 0 0 1 0 2 TMED9 chr5:177019676 5'GT 177019676 Upstream 88bp
chr5 131940547 131940547 1 + A G GBM 131940539 + 131940519 131940559 41 ATCGTAAGCTTATACAGGACCAGCAGGAACAGATTCAACAT ATCGTAAGCTTATACAGGACCAGCAGGAGCAGATTCAACAT < 41bp 1 0.696748563879538 1 0.179740399122238 experiment 0.606502872240923 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131940539 chr5:131940547 synonymous SNV . 0 29 hm5C_associated_SNPs_22874 0 0 1 0 1 RAD50 chr5:131940498 3'AG 131940498 Downstream 50bp
chr15 76630252 76630252 1 + G T GBM 76630260 + 76630240 76630280 41 GTACCTGGACGAGACGTGCACGTGCTTCGTGAGAGACGGGA GTACCTGGACGATACGTGCACGTGCTTCGTGAGAGACGGGA < 41bp 1 0.26600978264759 1 0.252146333456039 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ISL2 ENSG00000159556 CDS Human protein_coding chr15:76630260 chr15:76630252 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_22875 0 0 1 0 1 ISL2 chr15:76630308 5'GT 76630308 Upstream 57bp
chr1 43917153 43917153 1 - A G GBM 43917159 - 43917139 43917179 41 AGCCCAGCAGCCCCGGAGAGCTGAATTTCCCCTATCTGTTT AGCCCAGCAGCCCCGGAGAGCTGAATCTCCCCTATCTGTTT < 41bp 1 0.611527942640379 1 0.325560688972473 experiment 0.776944114719241 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HYI ENSG00000178922 CDS Human protein_coding chr1:43917159 chr1:43917153 nonsynonymous SNV 0.991 2 27 hm5C_associated_SNPs_22876 0 0 1 0 3 HYI chr1:43917081 5'GT 43917081 Upstream 73bp
chr1 43917153 43917153 1 - A G GBM 43917159 - 43917139 43917179 41 AGCCCAGCAGCCCCGGAGAGCTGAATTTCCCCTATCTGTTT AGCCCAGCAGCCCCGGAGAGCTGAATCTCCCCTATCTGTTT < 41bp 1 0.611527942640379 1 0.325560688972473 experiment 0.776944114719241 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HYI ENSG00000178922 CDS Human protein_coding chr1:43917159 chr1:43917153 nonsynonymous SNV 0.991 2 27 hm5C_associated_SNPs_22876 0 0 1 0 3 HYI chr1:43917099 5'GT 43917099 Upstream 55bp
chr1 43917153 43917153 1 - A G GBM 43917159 - 43917139 43917179 41 AGCCCAGCAGCCCCGGAGAGCTGAATTTCCCCTATCTGTTT AGCCCAGCAGCCCCGGAGAGCTGAATCTCCCCTATCTGTTT < 41bp 1 0.611527942640379 1 0.325560688972473 experiment 0.776944114719241 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HYI ENSG00000178922 CDS Human protein_coding chr1:43917159 chr1:43917153 nonsynonymous SNV 0.991 2 27 hm5C_associated_SNPs_22876 0 0 1 0 3 HYI chr1:43917215 3'AG 43917215 Downstream 63bp
chr21 44450022 44450022 1 + G A GBM 44450012 + 44449992 44450032 41 TGCCGCAGGAGCTGTTGTCACCATCACCACGCCCGTGAACA TGCCGCAGGAGCTGTTGTCACCATCACCACACCCGTGAACA < 41bp 1 0.0745026041075308 1 0.294167220592499 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PKNOX1 ENSG00000160199 CDS Human protein_coding chr21:44450012 chr21:44450022 synonymous SNV . 0 31 hm5C_associated_SNPs_22877 0 0 0 0 1 PKNOX1 chr21:44450000 3'AG 44450000 Downstream 23bp
chr17 47004377 47004377 1 + C T GBM 47004386 + 47004366 47004406 41 CCCTCTTGATGCGCCTGGGACTGATACGTCAGAAAGTGCTG CCCTCTTGATGTGCCTGGGACTGATACGTCAGAAAGTGCTG < 41bp 1 0.244763351120992 1 0.131470680236816 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE2Z ENSG00000159202 CDS Human protein_coding chr17:47004386 chr17:47004377 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_22878 0 0 1 0 1 UBE2Z chr17:47004326 3'AG 47004326 Downstream 52bp
chr17 33932748 33932748 1 + C A GBM 33932759 + 33932739 33932779 41 CGTAGTGAACTGTATGCAGACTGACAATCTGGAACTAAAGA CGTAGTGAAATGTATGCAGACTGACAATCTGGAACTAAAGA < 41bp 1 0.124918521308821 1 0.0213044285774231 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP2B1 ENSG00000006125 CDS Human protein_coding chr17:33932759 chr17:33932748 nonsynonymous SNV 0.999 1 10 hm5C_associated_SNPs_22879 0 0 1 0 1 AP2B1 chr17:33932724 3'AG 33932724 Downstream 25bp
chr17 47004360 47004360 1 + A G GBM 47004350 + 47004330 47004370 41 CTTTTGGAGAGAAGCGGGGCCACTTTGACTACCAGTCCCTC CTTTTGGAGAGAAGCGGGGCCACTTTGACTGCCAGTCCCTC < 41bp 1 0.209847595799193 1 0.0727498531341553 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE2Z ENSG00000159202 CDS Human protein_coding chr17:47004350 chr17:47004360 nonsynonymous SNV 1.000 5 31 hm5C_associated_SNPs_22881 0 0 1 0 1 UBE2Z chr17:47004326 3'AG 47004326 Downstream 35bp
chr12 132325349 132325349 1 + C T GBM 132325361 + 132325341 132325381 41 CACCACACCGCCGGGGACACCCACTTTGACGATGACGAGGC CACCACACTGCCGGGGACACCCACTTTGACGATGACGAGGC < 41bp 1 0.223948662188515 1 0.273419797420502 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132325361 chr12:132325349 synonymous SNV . 0 9 hm5C_associated_SNPs_22882 0 0 0 0 1 MMP17 chr12:132325401 5'GT 132325401 Upstream 53bp
chr1 207498012 207498012 1 + G A GBM 207498032 + 207498012 207498052 41 GTTACAGAAGAGAACCTTCTCTATCACCAAAACTAACTTGC ATTACAGAAGAGAACCTTCTCTATCACCAAAACTAACTTGC < 41bp 1 0.22863351634413 1 0.0970371961593628 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CD55 ENSG00000196352 CDS Human protein_coding chr1:207498032 chr1:207498012 nonsynonymous SNV 0.004 4 1 hm5C_associated_SNPs_22883 0 0 1 0 2 CD55 chr1:207498012 3'AG 207498012 Downstream 1bp
chr1 207498012 207498012 1 + G A GBM 207498032 + 207498012 207498052 41 GTTACAGAAGAGAACCTTCTCTATCACCAAAACTAACTTGC ATTACAGAAGAGAACCTTCTCTATCACCAAAACTAACTTGC < 41bp 1 0.22863351634413 1 0.0970371961593628 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CD55 ENSG00000196352 CDS Human protein_coding chr1:207498032 chr1:207498012 nonsynonymous SNV 0.004 4 1 hm5C_associated_SNPs_22883 0 0 1 0 2 CD55 chr1:207498095 5'GT 207498095 Upstream 84bp
chr6 33633655 33633655 1 + G A GBM 33633637 + 33633617 33633657 41 TCATCCAGCTGCTGGAAGACCTGGTGTTCTTTGTCAGCGAT TCATCCAGCTGCTGGAAGACCTGGTGTTCTTTGTCAGCAAT < 41bp 1 0.462018296269442 1 0.153171181678772 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33633637 chr6:33633655 nonsynonymous SNV 0.978 4 39 hm5C_associated_SNPs_22884 0 0 1 0 2 ITPR3 chr6:33633612 3'AG 33633612 Downstream 44bp
chr6 33633655 33633655 1 + G A GBM 33633637 + 33633617 33633657 41 TCATCCAGCTGCTGGAAGACCTGGTGTTCTTTGTCAGCGAT TCATCCAGCTGCTGGAAGACCTGGTGTTCTTTGTCAGCAAT < 41bp 1 0.462018296269442 1 0.153171181678772 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33633637 chr6:33633655 nonsynonymous SNV 0.978 4 39 hm5C_associated_SNPs_22884 0 0 1 0 2 ITPR3 chr6:33633753 5'GT 33633753 Upstream 99bp
chr3 184039151 184039151 1 + C T GBM 184039162 + 184039142 184039182 41 CCCAGCCTTCGTCGCCTTCTCCGACCCCATCACCATCCCCA CCCAGCCTTTGTCGCCTTCTCCGACCCCATCACCATCCCCA < 41bp 1 0.260048351196711 1 0.331364512443542 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184039162 chr3:184039151 nonsynonymous SNV 0.995 3 10 hm5C_associated_SNPs_22885 0 0 1 0 1 EIF4G1 chr3:184039070 3'AG 184039070 Downstream 82bp
chr3 184039151 184039151 1 + C T GBM 184039163 + 184039143 184039183 41 CCAGCCTTCGTCGCCTTCTCCGACCCCATCACCATCCCCAG CCAGCCTTTGTCGCCTTCTCCGACCCCATCACCATCCCCAG < 41bp 1 0.411987473623114 1 0.801078200340271 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184039163 chr3:184039151 nonsynonymous SNV 0.995 3 9 hm5C_associated_SNPs_22886 0 0 1 0 1 EIF4G1 chr3:184039070 3'AG 184039070 Downstream 82bp
chr2 228398390 228398390 1 + G T GBM 228398373 + 228398353 228398393 41 TTCCCAGAGTCATCAAACAGCATCAGCTGTTAGTAAAGTTT TTCCCAGAGTCATCAAACAGCATCAGCTGTTAGTAAATTTT < 41bp 1 0.348634423540948 1 0.0653312206268311 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGFG1 ENSG00000173744 CDS Human protein_coding chr2:228398373 chr2:228398390 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_22887 0 0 1 0 1 AGFG1 chr2:228398474 5'GT 228398474 Upstream 85bp
chr3 17056231 17056231 1 + G A GBM 17056251 + 17056231 17056271 41 GCCTCTCCTCTGTGGCCAATCTCATGCAGTGCATGTTGGCG ACCTCTCCTCTGTGGCCAATCTCATGCAGTGCATGTTGGCG < 41bp 1 0.512800315160789 1 0.161517381668091 experiment 0.974399369678421 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCL2 ENSG00000154822 CDS Human protein_coding chr3:17056251 chr3:17056231 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_22888 0 0 1 0 1 PLCL2 chr3:17056200 3'AG 17056200 Downstream 32bp
chr20 3802814 3802814 1 + A G GBM 3802800 + 3802780 3802820 41 CTCATTCACACCTTGAGGGCCCCGAATACTGAGGACACGGG CTCATTCACACCTTGAGGGCCCCGAATACTGAGGGCACGGG < 41bp 1 0.423557904359947 1 0.0489690005779266 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5S1 ENSG00000125843 CDS Human protein_coding chr20:3802800 chr20:3802814 nonsynonymous SNV 0.039 0 35 hm5C_associated_SNPs_22890 0 0 1 0 1 AP5S1 chr20:3802749 3'AG 3802749 Downstream 66bp
chr3 39431077 39431077 1 + G A GBM 39431076 + 39431056 39431096 41 CTCTGGATCTCCTTAAAACACGCCTGCAAACCCTCCAGCCC CTCTGGATCTCCTTAAAACACACCTGCAAACCCTCCAGCCC < 41bp 1 0.767150517157046 1 0.0838597118854523 experiment 0.465698965685908 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431076 chr3:39431077 nonsynonymous SNV 0.987 4 22 hm5C_associated_SNPs_22891 2 0 0 0 2 SLC25A38 chr3:39430986 3'AG 39430986 Downstream 92bp
chr3 39431077 39431077 1 + G A GBM 39431076 + 39431056 39431096 41 CTCTGGATCTCCTTAAAACACGCCTGCAAACCCTCCAGCCC CTCTGGATCTCCTTAAAACACACCTGCAAACCCTCCAGCCC < 41bp 1 0.767150517157046 1 0.0838597118854523 experiment 0.465698965685908 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431076 chr3:39431077 nonsynonymous SNV 0.987 4 22 hm5C_associated_SNPs_22891 2 0 0 0 2 SLC25A38 chr3:39431107 5'GT 39431107 Upstream 31bp
chr11 119045948 119045948 1 + C A GBM 119045961 + 119045941 119045981 41 GCTGCCTCTGCGGGCTCTGCCTCTGCTCTTCAACCTGATCA GCTGCCTATGCGGGCTCTGCCTCTGCTCTTCAACCTGATCA < 41bp 1 0.364927116599647 1 0.261979043483734 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119045961 chr11:119045948 nonsynonymous SNV 0.978 3 8 hm5C_associated_SNPs_22892 0 0 0 0 1 NLRX1 chr11:119045983 5'GT 119045983 Upstream 36bp
chr7 98589837 98589837 1 + A G GBM 98589838 + 98589818 98589858 41 TGAAAATAGAACAGCGGGAACGCTACAAGAGCGGTACGTCT TGAAAATAGAACAGCGGGAGCGCTACAAGAGCGGTACGTCT < 41bp 1 0.16493409420434 1 0.480531632900238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98589838 chr7:98589837 synonymous SNV . 0 20 hm5C_associated_SNPs_22896 0 0 0 0 2 TRRAP chr7:98589760 3'AG 98589760 Downstream 78bp
chr7 98589837 98589837 1 + A G GBM 98589838 + 98589818 98589858 41 TGAAAATAGAACAGCGGGAACGCTACAAGAGCGGTACGTCT TGAAAATAGAACAGCGGGAGCGCTACAAGAGCGGTACGTCT < 41bp 1 0.16493409420434 1 0.480531632900238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98589838 chr7:98589837 synonymous SNV . 0 20 hm5C_associated_SNPs_22896 0 0 0 0 2 TRRAP chr7:98589850 5'GT 98589850 Upstream 14bp
chr1 224553692 224553692 1 + C T GBM 224553676 + 224553656 224553696 41 CTTCTCAACTTACCTGTTGCCACTTGGAATATATATCGGTG CTTCTCAACTTACCTGTTGCCACTTGGAATATATATTGGTG < 41bp 1 0.264947798822209 1 0.381448715925217 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNIH4 ENSG00000143771 CDS Human protein_coding chr1:224553676 chr1:224553692 stopgain 0.999 2 37 hm5C_associated_SNPs_22897 0 0 1 0 1 CNIH4 chr1:224553693 5'GT 224553693 Upstream 2bp
chr9 97767852 97767852 1 + G T GBM 97767847 + 97767827 97767867 41 ACGAAATGGATTGGAGTGAACCGGAGACCCCGAAAACGGAA ACGAAATGGATTGGAGTGAACCGGATACCCCGAAAACGGAA < 41bp 1 0.625180918517232 1 0.532237946987152 experiment 0.749638162965535 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf3 ENSG00000148120 CDS Human protein_coding chr9:97767847 chr9:97767852 nonsynonymous SNV 0.894 3 26 hm5C_associated_SNPs_22898 0 0 1 0 2 C9orf3 chr9:97767824 3'AG 97767824 Downstream 29bp
chr9 97767852 97767852 1 + G T GBM 97767847 + 97767827 97767867 41 ACGAAATGGATTGGAGTGAACCGGAGACCCCGAAAACGGAA ACGAAATGGATTGGAGTGAACCGGATACCCCGAAAACGGAA < 41bp 1 0.625180918517232 1 0.532237946987152 experiment 0.749638162965535 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf3 ENSG00000148120 CDS Human protein_coding chr9:97767847 chr9:97767852 nonsynonymous SNV 0.894 3 26 hm5C_associated_SNPs_22898 0 0 1 0 2 C9orf3 chr9:97767898 5'GT 97767898 Upstream 47bp
chrX 107814694 107814694 1 + C T GBM 107814691 + 107814671 107814711 41 GTTTTCCTGGTTTACAGGGTCCTCCAGTAAGTTATAAAATT GTTTTCCTGGTTTACAGGGTCCTTCAGTAAGTTATAAAATT < 41bp 1 0.00400761248632255 1 0.0218939483165741 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107814691 chrX:107814694 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_22899 0 0 1 0 2 COL4A5 chrX:107814643 3'AG 107814643 Downstream 52bp
chrX 107814694 107814694 1 + C T GBM 107814691 + 107814671 107814711 41 GTTTTCCTGGTTTACAGGGTCCTCCAGTAAGTTATAAAATT GTTTTCCTGGTTTACAGGGTCCTTCAGTAAGTTATAAAATT < 41bp 1 0.00400761248632255 1 0.0218939483165741 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107814691 chrX:107814694 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_22899 0 0 1 0 2 COL4A5 chrX:107814696 5'GT 107814696 Upstream 3bp
chr11 61584149 61584149 1 + G A GBM 61584155 + 61584135 61584175 41 CTCGCACCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGT CTCGCACCCTGAGCACTGGGCCACCTCGTCCCAGGTGAAGT < 41bp 1 0.031534014335105 1 0.0493794977664948 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584155 chr11:61584149 nonsynonymous SNV 0.819 3 15 hm5C_associated_SNPs_22900 0 0 1 0 1 FADS1;FADS2 chr11:61584168 5'GT 61584168 Upstream 20bp
chr11 61584149 61584149 1 + G A GBM 61584156 + 61584136 61584176 41 TCGCACCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTA TCGCACCCTGAGCACTGGGCCACCTCGTCCCAGGTGAAGTA < 41bp 1 0.165437087141444 1 0.059850811958313 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584156 chr11:61584149 nonsynonymous SNV 0.819 3 14 hm5C_associated_SNPs_22901 0 0 1 0 1 FADS1;FADS2 chr11:61584168 5'GT 61584168 Upstream 20bp
chr11 61584149 61584149 1 + G A GBM 61584158 + 61584138 61584178 41 GCACCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGC GCACCCTGAGCACTGGGCCACCTCGTCCCAGGTGAAGTAGC < 41bp 1 0.0734566750862709 1 0.0579234659671783 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584158 chr11:61584149 nonsynonymous SNV 0.819 3 12 hm5C_associated_SNPs_22902 0 0 1 0 1 FADS1;FADS2 chr11:61584168 5'GT 61584168 Upstream 20bp
chr11 61584149 61584149 1 + G A GBM 61584159 + 61584139 61584179 41 CACCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGCG CACCCTGAGCACTGGGCCACCTCGTCCCAGGTGAAGTAGCG < 41bp 1 0.379943132477334 1 0.226368874311447 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584159 chr11:61584149 nonsynonymous SNV 0.819 3 11 hm5C_associated_SNPs_22903 0 0 1 0 1 FADS1;FADS2 chr11:61584168 5'GT 61584168 Upstream 20bp
chr11 61584149 61584149 1 + G A GBM 61584161 + 61584141 61584181 41 CCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGCGCG CCCTGAGCACTGGGCCACCTCGTCCCAGGTGAAGTAGCGCG < 41bp 1 0.223173535037796 1 0.445814937353134 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584161 chr11:61584149 nonsynonymous SNV 0.819 3 9 hm5C_associated_SNPs_22904 0 0 1 0 1 FADS1;FADS2 chr11:61584168 5'GT 61584168 Upstream 20bp
chr11 61584149 61584149 1 + G A GBM 61584164 + 61584144 61584184 41 TGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGCGCGGGG TGAGCACTGGGCCACCTCGTCCCAGGTGAAGTAGCGCGGGG < 41bp 1 0.452046887354591 1 0.78781920671463 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584164 chr11:61584149 nonsynonymous SNV 0.819 3 6 hm5C_associated_SNPs_22905 0 0 1 0 1 FADS1;FADS2 chr11:61584168 5'GT 61584168 Upstream 20bp
chr11 61584149 61584149 1 + G A GBM 61584165 + 61584145 61584185 41 GAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGCGCGGGGT GAGCACTGGGCCACCTCGTCCCAGGTGAAGTAGCGCGGGGT < 41bp 1 0.430428516653429 1 0.817209959030151 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584165 chr11:61584149 nonsynonymous SNV 0.819 3 5 hm5C_associated_SNPs_22906 0 0 1 0 1 FADS1;FADS2 chr11:61584168 5'GT 61584168 Upstream 20bp
chr7 142561955 142561955 1 + C T GBM 142561972 + 142561952 142561992 41 TACCGTCAGGCTGAGGAGCCCGACAGCCCTGACAGCGTTTC TACTGTCAGGCTGAGGAGCCCGACAGCCCTGACAGCGTTTC < 41bp 1 0.720587885302799 1 0.153075575828552 experiment 0.558824229394401 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142561972 chr7:142561955 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_22907 0 0 0 0 1 EPHB6 chr7:142562020 5'GT 142562020 Upstream 66bp
chr15 25222149 25222149 1 + C T GBM 25222166 + 25222146 25222186 41 TGTCCGAGGAGTTGGGGGACCATCCCAGCAGGTGAGGAACC TGTTCGAGGAGTTGGGGGACCATCCCAGCAGGTGAGGAACC < 41bp 1 0.134702079794535 1 0.221936404705048 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25222166 chr15:25222149 synonymous SNV . 0 4 hm5C_associated_SNPs_22908 0 0 1 0 1 SNRPN chr15:25222176 5'GT 25222176 Upstream 28bp
chr15 80450503 80450503 1 + C A GBM 80450510 + 80450490 80450530 41 AACACCAGGATGTCTTCAATCAGGTAGGACATTGTGAAACG AACACCAGGATGTATTCAATCAGGTAGGACATTGTGAAACG < 41bp 1 0.64752128305105 1 0.544570744037628 experiment 0.704957433897901 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAH ENSG00000103876 CDS Human protein_coding chr15:80450510 chr15:80450503 synonymous SNV . 0 14 hm5C_associated_SNPs_22909 0 0 1 0 1 FAH chr15:80450512 5'GT 80450512 Upstream 10bp
chr5 33455769 33455769 1 + G T GBM 33455756 + 33455736 33455776 41 AGAAAATCATTAAAGAAAAACAAGCTTTTGAAAGACTGGAA AGAAAATCATTAAAGAAAAACAAGCTTTTGAAATACTGGAA < 41bp 1 0.305728720486169 1 0.312661230564117 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33455756 chr5:33455769 nonsynonymous SNV 0.997 4 34 hm5C_associated_SNPs_22912 0 0 1 0 2 TARS chr5:33455692 3'AG 33455692 Downstream 78bp
chr5 33455769 33455769 1 + G T GBM 33455756 + 33455736 33455776 41 AGAAAATCATTAAAGAAAAACAAGCTTTTGAAAGACTGGAA AGAAAATCATTAAAGAAAAACAAGCTTTTGAAATACTGGAA < 41bp 1 0.305728720486169 1 0.312661230564117 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33455756 chr5:33455769 nonsynonymous SNV 0.997 4 34 hm5C_associated_SNPs_22912 0 0 1 0 2 TARS chr5:33455809 5'GT 33455809 Upstream 41bp
chr4 123260537 123260537 1 + C A GBM 123260543 + 123260523 123260563 41 GAGTGGAACAAAGACTTCTGCTAGCAAAACTGGAATACCAG GAGTGGAACAAAGAATTCTGCTAGCAAAACTGGAATACCAG < 41bp 1 0.119484747318636 1 0.168009340763092 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123260543 chr4:123260537 nonsynonymous SNV 0.998 0 15 hm5C_associated_SNPs_22913 0 0 1 0 1 KIAA1109 chr4:123260563 5'GT 123260563 Upstream 27bp
chr20 19937366 19937366 1 + G A GBM 19937385 + 19937365 19937405 41 CGGCTCCTCCACACCCACCCCATATGGCTGCAGCTGAGTCT CAGCTCCTCCACACCCACCCCATATGGCTGCAGCTGAGTCT < 41bp 1 0.146303989094062 1 0.215769171714783 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIN2 ENSG00000132669 CDS Human protein_coding chr20:19937385 chr20:19937366 nonsynonymous SNV 0.995 1 2 hm5C_associated_SNPs_22914 0 0 0 0 1 RIN2 chr20:19937451 5'GT 19937451 Upstream 86bp
chr7 91735020 91735020 1 + C T GBM 91735017 + 91734997 91735037 41 AATTTTTGGTTCGACGGTGGCATCGAGTCACAGGTTCTGTT AATTTTTGGTTCGACGGTGGCATTGAGTCACAGGTTCTGTT < 41bp 1 0.061354559578008 1 0.145340830087662 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91735017 chr7:91735020 stopgain 0.997 0 24 hm5C_associated_SNPs_22915 0 0 1 0 2 AKAP9 chr7:91734992 3'AG 91734992 Downstream 29bp
chr7 91735020 91735020 1 + C T GBM 91735017 + 91734997 91735037 41 AATTTTTGGTTCGACGGTGGCATCGAGTCACAGGTTCTGTT AATTTTTGGTTCGACGGTGGCATTGAGTCACAGGTTCTGTT < 41bp 1 0.061354559578008 1 0.145340830087662 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91735017 chr7:91735020 stopgain 0.997 0 24 hm5C_associated_SNPs_22915 0 0 1 0 2 AKAP9 chr7:91735077 5'GT 91735077 Upstream 58bp
chr11 48134396 48134396 1 + G T GBM 48134404 + 48134384 48134424 41 CTTTCATAAACAGAATGGAACTGGAACACCTCAGGTGGAAA CTTTCATAAACATAATGGAACTGGAACACCTCAGGTGGAAA < 41bp 1 0.493805229330742 1 0.35454648733139 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48134404 chr11:48134396 nonsynonymous SNV 0.002 0 13 hm5C_associated_SNPs_22916 0 0 1 0 1 PTPRJ chr11:48134299 3'AG 48134299 Downstream 98bp
chr7 135291554 135291554 1 + C A GBM 135291549 + 135291529 135291569 41 TTCGTCATGAAACAAGAATCCACATCTTGAATCTTCTCATT TTCGTCATGAAACAAGAATCCACATATTGAATCTTCTCATT < 41bp 1 0.252667358592442 1 0.109789729118347 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135291549 chr7:135291554 synonymous SNV . 0 26 hm5C_associated_SNPs_22917 0 0 1 0 1 NUP205 chr7:135291499 3'AG 135291499 Downstream 56bp
chr12 123875317 123875317 1 + C A GBM 123875303 + 123875283 123875323 41 AAGTCAAATGCCAGGGGAAACCATTAGCCGGAATCTACAGG AAGTCAAATGCCAGGGGAAACCATTAGCCGGAATATACAGG < 41bp 1 0.0468692664379921 1 0.0654144287109375 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KMT5A ENSG00000183955 CDS Human protein_coding chr12:123875303 chr12:123875317 nonsynonymous SNV . 0 35 hm5C_associated_SNPs_22919 0 0 0 0 1 KMT5A chr12:123875333 5'GT 123875333 Upstream 17bp
chr12 123875317 123875317 1 + C A GBM 123875304 + 123875284 123875324 41 AGTCAAATGCCAGGGGAAACCATTAGCCGGAATCTACAGGA AGTCAAATGCCAGGGGAAACCATTAGCCGGAATATACAGGA < 41bp 1 0.594557887500652 1 0.361106395721436 experiment 0.810884224998696 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KMT5A ENSG00000183955 CDS Human protein_coding chr12:123875304 chr12:123875317 nonsynonymous SNV . 0 34 hm5C_associated_SNPs_22920 0 0 0 0 1 KMT5A chr12:123875333 5'GT 123875333 Upstream 17bp
chr20 47639675 47639675 1 + C T GBM 47639658 + 47639638 47639678 41 TTGATACAGACCATTGACAACATTGTGTTCTACCCTGCGAC TTGATACAGACCATTGACAACATTGTGTTCTACCCTGTGAC < 41bp 1 0.0893341727698255 1 0.107313334941864 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47639658 chr20:47639675 nonsynonymous SNV 0.415 3 38 hm5C_associated_SNPs_22922 0 0 1 0 2 ARFGEF2 chr20:47639588 3'AG 47639588 Downstream 88bp
chr20 47639675 47639675 1 + C T GBM 47639658 + 47639638 47639678 41 TTGATACAGACCATTGACAACATTGTGTTCTACCCTGCGAC TTGATACAGACCATTGACAACATTGTGTTCTACCCTGTGAC < 41bp 1 0.0893341727698255 1 0.107313334941864 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47639658 chr20:47639675 nonsynonymous SNV 0.415 3 38 hm5C_associated_SNPs_22922 0 0 1 0 2 ARFGEF2 chr20:47639718 5'GT 47639718 Upstream 44bp
chr19 6374343 6374343 1 + C A GBM 6374323 + 6374303 6374343 41 CCCCGGCCAGACCCTGCTCTCCTCCGTGCACGTGCTGGACC CCCCGGCCAGACCCTGCTCTCCTCCGTGCACGTGCTGGACA < 41bp 1 0.201658861709931 1 0.0887159705162048 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALKBH7 ENSG00000125652 CDS Human protein_coding chr19:6374323 chr19:6374343 nonsynonymous SNV 0.997 4 41 hm5C_associated_SNPs_22923 0 0 1 0 1 ALKBH7 chr19:6374387 5'GT 6374387 Upstream 45bp
chr18 56063406 56063406 1 + C T GBM 56063414 + 56063394 56063434 41 TGCAGCTTTAATCGCCTTGACTTACCTCCATATGAAACCTT TGCAGCTTTAATTGCCTTGACTTACCTCCATATGAAACCTT < 41bp 1 0.0389363488262936 1 0.064290463924408 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NEDD4L ENSG00000049759 CDS Human protein_coding chr18:56063414 chr18:56063406 nonsynonymous SNV 0.999 4 13 hm5C_associated_SNPs_22924 0 0 1 0 1 NEDD4L chr18:56063399 3'AG 56063399 Downstream 8bp
chr12 121858093 121858093 1 + G A GBM 121858092 + 121858072 121858112 41 ACAGAAGATGATGATGACGACGATGATGAGGATGATGATGA ACAGAAGATGATGATGACGACAATGATGAGGATGATGATGA < 41bp 1 0.30754225910848 1 0.172055512666702 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNF34 ENSG00000170633 CDS Human protein_coding chr12:121858092 chr12:121858093 nonsynonymous SNV 0.044 0 22 hm5C_associated_SNPs_22925 0 0 1 0 2 RNF34 chr12:121858045 3'AG 121858045 Downstream 49bp
chr12 121858093 121858093 1 + G A GBM 121858092 + 121858072 121858112 41 ACAGAAGATGATGATGACGACGATGATGAGGATGATGATGA ACAGAAGATGATGATGACGACAATGATGAGGATGATGATGA < 41bp 1 0.30754225910848 1 0.172055512666702 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNF34 ENSG00000170633 CDS Human protein_coding chr12:121858092 chr12:121858093 nonsynonymous SNV 0.044 0 22 hm5C_associated_SNPs_22925 0 0 1 0 2 RNF34 chr12:121858137 5'GT 121858137 Upstream 45bp
chr19 810782 810782 1 + G A GBM 810787 + 810767 810807 41 AACCACGACCTCGGGGAGAACCACCACCTGCGGGTCTCCTT AACCACGACCTCGGGAAGAACCACCACCTGCGGGTCTCCTT < 41bp 1 0.151729629602782 1 0.188664972782135 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:810787 chr19:810782 nonsynonymous SNV 0.997 1 16 hm5C_associated_SNPs_22926 0 0 1 0 1 PTBP1 chr19:810694 3'AG 810694 Downstream 89bp
chr17 64783079 64783079 1 + C A GBM 64783073 + 64783053 64783093 41 AAAATCCTTGTCCAAGGAGGCTGTTTCTGTCTGCAAAGGAG AAAATCCTTGTCCAAGGAGGCTGTTTATGTCTGCAAAGGAG < 41bp 1 0.0468105131578975 1 0.259233474731445 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64783073 chr17:64783079 nonsynonymous SNV 0.970 2 27 hm5C_associated_SNPs_22929 0 0 1 0 2 PRKCA chr17:64782985 3'AG 64782985 Downstream 95bp
chr17 64783079 64783079 1 + C A GBM 64783073 + 64783053 64783093 41 AAAATCCTTGTCCAAGGAGGCTGTTTCTGTCTGCAAAGGAG AAAATCCTTGTCCAAGGAGGCTGTTTATGTCTGCAAAGGAG < 41bp 1 0.0468105131578975 1 0.259233474731445 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64783073 chr17:64783079 nonsynonymous SNV 0.970 2 27 hm5C_associated_SNPs_22929 0 0 1 0 2 PRKCA chr17:64783092 5'GT 64783092 Upstream 14bp
chr6 33380542 33380542 1 + G A GBM 33380523 + 33380503 33380543 41 TTGTGTCTGTCGCTCTGAGACTGTGGTCCCTGGGAACCGGC TTGTGTCTGTCGCTCTGAGACTGTGGTCCCTGGGAACCGAC < 41bp 1 0.433201720632094 1 0.135435968637466 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF1 ENSG00000112511 CDS Human protein_coding chr6:33380523 chr6:33380542 synonymous SNV . 0 40 hm5C_associated_SNPs_22930 0 0 1 2 2 PHF1 chr6:33380475 3'AG 33380475 Downstream 68bp
chr6 33380542 33380542 1 + G A GBM 33380523 + 33380503 33380543 41 TTGTGTCTGTCGCTCTGAGACTGTGGTCCCTGGGAACCGGC TTGTGTCTGTCGCTCTGAGACTGTGGTCCCTGGGAACCGAC < 41bp 1 0.433201720632094 1 0.135435968637466 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF1 ENSG00000112511 CDS Human protein_coding chr6:33380523 chr6:33380542 synonymous SNV . 0 40 hm5C_associated_SNPs_22930 0 0 1 2 2 PHF1 chr6:33380570 5'GT 33380570 Upstream 29bp
chr7 135258552 135258552 1 + G A GBM 135258571 + 135258551 135258591 41 AGCTGTTGAGCTTCTTCTTGCTGGTAGGTTGACATTTAACT AACTGTTGAGCTTCTTCTTGCTGGTAGGTTGACATTTAACT < 41bp 1 0.212807849487171 1 0.118764460086823 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135258571 chr7:135258552 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_22931 0 0 1 2 1 NUP205 chr7:135258573 5'GT 135258573 Upstream 22bp
chr3 141644464 141644464 1 + G T GBM 141644475 + 141644455 141644495 41 AGATTGATGGATCAGCCAACCTAAAAAGTCAGGATGATCGT AGATTGATGTATCAGCCAACCTAAAAAGTCAGGATGATCGT < 41bp 1 0.695922907730122 1 0.416225969791412 experiment 0.608154184539756 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141644475 chr3:141644464 nonsynonymous SNV 0.385 4 10 hm5C_associated_SNPs_22932 0 0 1 0 1 ATP1B3 chr3:141644373 3'AG 141644373 Downstream 92bp
chr1 92769550 92769550 1 + C A GBM 92769553 + 92769533 92769573 41 GGGGAGGTTCATTACACCTGCTCACTACAGTGATGTCGTGG GGGGAGGTTCATTACACATGCTCACTACAGTGATGTCGTGG < 41bp 1 0.256567730941705 1 0.0762902796268463 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPAP2 ENSG00000122484 CDS Human protein_coding chr1:92769553 chr1:92769550 nonsynonymous SNV 0.996 3 18 hm5C_associated_SNPs_22933 0 0 1 1 2 RPAP2 chr1:92769534 3'AG 92769534 Downstream 17bp
chr1 92769550 92769550 1 + C A GBM 92769553 + 92769533 92769573 41 GGGGAGGTTCATTACACCTGCTCACTACAGTGATGTCGTGG GGGGAGGTTCATTACACATGCTCACTACAGTGATGTCGTGG < 41bp 1 0.256567730941705 1 0.0762902796268463 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPAP2 ENSG00000122484 CDS Human protein_coding chr1:92769553 chr1:92769550 nonsynonymous SNV 0.996 3 18 hm5C_associated_SNPs_22933 0 0 1 1 2 RPAP2 chr1:92769632 5'GT 92769632 Upstream 83bp
chr9 95869974 95869974 1 + G A GBM 95869992 + 95869972 95870012 41 CCGCCTGGTGCAGGACACGCCTTTCCTGACAGGCCATGGGC CCACCTGGTGCAGGACACGCCTTTCCTGACAGGCCATGGGC < 41bp 1 0.0559258095612369 1 0.0723204910755157 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARD19 ENSG00000165233 CDS Human protein_coding chr9:95869992 chr9:95869974 nonsynonymous SNV 0.998 4 3 hm5C_associated_SNPs_22934 0 0 1 0 1 CARD19 chr9:95869956 3'AG 95869956 Downstream 19bp
chr16 67914549 67914549 1 + C T GBM 67914550 + 67914530 67914570 41 CCCCTAGCCGCACTCGTTCCCCTGATGTCATCTCCTCAGCT CCCCTAGCCGCACTCGTTCTCCTGATGTCATCTCCTCAGCT < 41bp 1 0.512467955372668 1 0.471185833215714 experiment 0.975064089254664 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914550 chr16:67914549 synonymous SNV . 0 20 hm5C_associated_SNPs_22935 0 0 1 0 1 EDC4 chr16:67914460 3'AG 67914460 Downstream 90bp
chr22 22025308 22025308 1 + T C GBM 22025316 + 22025296 22025336 41 CAGCCCTTTGTCTACCCAGTCTGCACTCCCGATGGCATCGT CAGCCCTTTGTCCACCCAGTCTGCACTCCCGATGGCATCGT < 41bp 1 0.558109116833226 1 0.467713981866837 experiment 0.883781766333547 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22025316 chr22:22025308 nonsynonymous SNV 0.975 1 13 hm5C_associated_SNPs_22937 0 0 1 0 2 PPIL2 chr22:22025286 3'AG 22025286 Downstream 23bp
chr22 22025308 22025308 1 + T C GBM 22025316 + 22025296 22025336 41 CAGCCCTTTGTCTACCCAGTCTGCACTCCCGATGGCATCGT CAGCCCTTTGTCCACCCAGTCTGCACTCCCGATGGCATCGT < 41bp 1 0.558109116833226 1 0.467713981866837 experiment 0.883781766333547 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22025316 chr22:22025308 nonsynonymous SNV 0.975 1 13 hm5C_associated_SNPs_22937 0 0 1 0 2 PPIL2 chr22:22025348 5'GT 22025348 Upstream 41bp
chr6 138727171 138727171 1 + G T GBM 138727165 + 138727145 138727185 41 CGTGGAGCCTGGTTCAGGTCCTTTTAGTGAGTCTACCATTA CGTGGAGCCTGGTTCAGGTCCTTTTATTGAGTCTACCATTA < 41bp 1 0.100758633584619 1 0.019841730594635 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HEBP2;HEBP2 ENSG00000051620;ENSG00000051620 exonic;splicing Human protein_coding chr6:138727165 chr6:138727171 nonsynonymous SNV 0.999 3 27 hm5C_associated_SNPs_22938 0 0 1 0 1 HEBP2 chr6:138727108 3'AG 138727108 Downstream 64bp
chr6 1391312 1391312 1 + A G GBM 1391304 + 1391284 1391324 41 CACTCCAGCATGTCCTCCTACTCGCTGGAGCAGAGCTACTT CACTCCAGCATGTCCTCCTACTCGCTGGGGCAGAGCTACTT < 41bp 1 0.467599667152339 1 0.242214858531952 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXF2 ENSG00000137273 CDS Human protein_coding chr6:1391304 chr6:1391312 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_22939 0 0 1 0 1 FOXF2 chr6:1391353 5'GT 1391353 Upstream 42bp
chr3 148562321 148562321 1 + C A GBM 148562304 + 148562284 148562324 41 GTGAGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTT GTGAGATCCAAGTGACAGAGCTTCTCGACAAGTTAGAATTT < 41bp 1 0.0925319866321057 1 0.0845984518527985 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562304 chr3:148562321 nonsynonymous SNV 0.983 1 38 hm5C_associated_SNPs_22941 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 57bp
chr3 148562321 148562321 1 + C A GBM 148562304 + 148562284 148562324 41 GTGAGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTT GTGAGATCCAAGTGACAGAGCTTCTCGACAAGTTAGAATTT < 41bp 1 0.0925319866321057 1 0.0845984518527985 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562304 chr3:148562321 nonsynonymous SNV 0.983 1 38 hm5C_associated_SNPs_22941 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 55bp
chr3 148562321 148562321 1 + C A GBM 148562307 + 148562287 148562327 41 AGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTAT AGATCCAAGTGACAGAGCTTCTCGACAAGTTAGAATTTTAT < 41bp 1 0.599174906458144 1 0.73429262638092 experiment 0.801650187083712 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562307 chr3:148562321 nonsynonymous SNV 0.983 1 35 hm5C_associated_SNPs_22942 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 57bp
chr3 148562321 148562321 1 + C A GBM 148562307 + 148562287 148562327 41 AGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTAT AGATCCAAGTGACAGAGCTTCTCGACAAGTTAGAATTTTAT < 41bp 1 0.599174906458144 1 0.73429262638092 experiment 0.801650187083712 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562307 chr3:148562321 nonsynonymous SNV 0.983 1 35 hm5C_associated_SNPs_22942 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 55bp
chr3 148562321 148562321 1 + C A GBM 148562309 + 148562289 148562329 41 ATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGT ATCCAAGTGACAGAGCTTCTCGACAAGTTAGAATTTTATGT < 41bp 1 0.735373810705432 1 0.621111452579498 experiment 0.529252378589137 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562309 chr3:148562321 nonsynonymous SNV 0.983 1 33 hm5C_associated_SNPs_22943 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 57bp
chr3 148562321 148562321 1 + C A GBM 148562309 + 148562289 148562329 41 ATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGT ATCCAAGTGACAGAGCTTCTCGACAAGTTAGAATTTTATGT < 41bp 1 0.735373810705432 1 0.621111452579498 experiment 0.529252378589137 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562309 chr3:148562321 nonsynonymous SNV 0.983 1 33 hm5C_associated_SNPs_22943 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 55bp
chr3 148562321 148562321 1 + C A GBM 148562312 + 148562292 148562332 41 CAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGTCCT CAAGTGACAGAGCTTCTCGACAAGTTAGAATTTTATGTCCT < 41bp 1 0.434961145528031 1 0.103492707014084 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562312 chr3:148562321 nonsynonymous SNV 0.983 1 30 hm5C_associated_SNPs_22944 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 57bp
chr3 148562321 148562321 1 + C A GBM 148562312 + 148562292 148562332 41 CAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGTCCT CAAGTGACAGAGCTTCTCGACAAGTTAGAATTTTATGTCCT < 41bp 1 0.434961145528031 1 0.103492707014084 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562312 chr3:148562321 nonsynonymous SNV 0.983 1 30 hm5C_associated_SNPs_22944 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 55bp
chr3 148562321 148562321 1 + C A GBM 148562330 + 148562310 148562350 41 GACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGA GACAAGTTAGAATTTTATGTCCTGCCTGTGCTCAATATTGA < 41bp 1 0.0739136962273508 1 0.0505400002002716 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562330 chr3:148562321 nonsynonymous SNV 0.983 1 12 hm5C_associated_SNPs_22945 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 57bp
chr3 148562321 148562321 1 + C A GBM 148562330 + 148562310 148562350 41 GACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGA GACAAGTTAGAATTTTATGTCCTGCCTGTGCTCAATATTGA < 41bp 1 0.0739136962273508 1 0.0505400002002716 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562330 chr3:148562321 nonsynonymous SNV 0.983 1 12 hm5C_associated_SNPs_22945 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 55bp
chr3 148562321 148562321 1 + C A GBM 148562331 + 148562311 148562351 41 ACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGAT ACAAGTTAGAATTTTATGTCCTGCCTGTGCTCAATATTGAT < 41bp 1 0.228068401868842 1 0.0822024941444397 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562331 chr3:148562321 nonsynonymous SNV 0.983 1 11 hm5C_associated_SNPs_22946 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 57bp
chr3 148562321 148562321 1 + C A GBM 148562331 + 148562311 148562351 41 ACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGAT ACAAGTTAGAATTTTATGTCCTGCCTGTGCTCAATATTGAT < 41bp 1 0.228068401868842 1 0.0822024941444397 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562331 chr3:148562321 nonsynonymous SNV 0.983 1 11 hm5C_associated_SNPs_22946 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 55bp
chr3 148562321 148562321 1 + C A GBM 148562334 + 148562314 148562354 41 AGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGC AGTTAGAATTTTATGTCCTGCCTGTGCTCAATATTGATGGC < 41bp 1 0.129793539307416 1 0.0370416045188904 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562334 chr3:148562321 nonsynonymous SNV 0.983 1 8 hm5C_associated_SNPs_22947 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 57bp
chr3 148562321 148562321 1 + C A GBM 148562334 + 148562314 148562354 41 AGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGC AGTTAGAATTTTATGTCCTGCCTGTGCTCAATATTGATGGC < 41bp 1 0.129793539307416 1 0.0370416045188904 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562334 chr3:148562321 nonsynonymous SNV 0.983 1 8 hm5C_associated_SNPs_22947 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 55bp
chr3 148562321 148562321 1 + C A GBM 148562335 + 148562315 148562355 41 GTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGCT GTTAGAATTTTATGTCCTGCCTGTGCTCAATATTGATGGCT < 41bp 1 0.432665100378774 1 0.213112771511078 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562335 chr3:148562321 nonsynonymous SNV 0.983 1 7 hm5C_associated_SNPs_22948 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 57bp
chr3 148562321 148562321 1 + C A GBM 148562335 + 148562315 148562355 41 GTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGCT GTTAGAATTTTATGTCCTGCCTGTGCTCAATATTGATGGCT < 41bp 1 0.432665100378774 1 0.213112771511078 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562335 chr3:148562321 nonsynonymous SNV 0.983 1 7 hm5C_associated_SNPs_22948 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 55bp
chr3 148562321 148562321 1 + C A GBM 148562340 + 148562320 148562360 41 ACTTTTATGTCCTGCCTGTGCTCAATATTGATGGCTACATC AATTTTATGTCCTGCCTGTGCTCAATATTGATGGCTACATC < 41bp 1 0.7596621583648 1 0.22741624712944 experiment 0.480675683270401 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562340 chr3:148562321 nonsynonymous SNV 0.983 1 2 hm5C_associated_SNPs_22949 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 57bp
chr3 148562321 148562321 1 + C A GBM 148562340 + 148562320 148562360 41 ACTTTTATGTCCTGCCTGTGCTCAATATTGATGGCTACATC AATTTTATGTCCTGCCTGTGCTCAATATTGATGGCTACATC < 41bp 1 0.7596621583648 1 0.22741624712944 experiment 0.480675683270401 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562340 chr3:148562321 nonsynonymous SNV 0.983 1 2 hm5C_associated_SNPs_22949 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 55bp
chr11 70181755 70181755 1 + G A GBM 70181768 + 70181748 70181788 41 ATGAGAGGCTTCAACTTCATCTTAAAGAGAGAATGGCTGCT ATGAGAGACTTCAACTTCATCTTAAAGAGAGAATGGCTGCT < 41bp 1 0.224700802367916 1 0.245926976203918 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70181768 chr11:70181755 synonymous SNV . 0 8 hm5C_associated_SNPs_22954 0 0 1 1 2 PPFIA1 chr11:70181669 3'AG 70181669 Downstream 87bp
chr11 70181755 70181755 1 + G A GBM 70181768 + 70181748 70181788 41 ATGAGAGGCTTCAACTTCATCTTAAAGAGAGAATGGCTGCT ATGAGAGACTTCAACTTCATCTTAAAGAGAGAATGGCTGCT < 41bp 1 0.224700802367916 1 0.245926976203918 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70181768 chr11:70181755 synonymous SNV . 0 8 hm5C_associated_SNPs_22954 0 0 1 1 2 PPFIA1 chr11:70181800 5'GT 70181800 Upstream 46bp
chr11 43411222 43411222 1 + A C GBM 43411217 + 43411197 43411237 41 AACAGAAACAATTAGTTGCTCAAAAAATTCACATAGAAGAG AACAGAAACAATTAGTTGCTCAAAACATTCACATAGAAGAG < 41bp 1 0.377889945856441 1 0.30573707818985 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTC17 ENSG00000052841 CDS Human protein_coding chr11:43411217 chr11:43411222 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_22955 0 0 1 0 1 TTC17 chr11:43411202 3'AG 43411202 Downstream 21bp
chr1 109804157 109804157 1 + G A GBM 109804156 + 109804136 109804176 41 TTTGCCACAAAGGAGCGCGACGGGTTGCTGTTGTACAATGG TTTGCCACAAAGGAGCGCGACAGGTTGCTGTTGTACAATGG < 41bp 1 0.218489901636067 1 0.14321756362915 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109804156 chr1:109804157 nonsynonymous SNV 0.870 4 22 hm5C_associated_SNPs_22956 0 0 1 0 2 CELSR2 chr1:109804135 3'AG 109804135 Downstream 23bp
chr1 109804157 109804157 1 + G A GBM 109804156 + 109804136 109804176 41 TTTGCCACAAAGGAGCGCGACGGGTTGCTGTTGTACAATGG TTTGCCACAAAGGAGCGCGACAGGTTGCTGTTGTACAATGG < 41bp 1 0.218489901636067 1 0.14321756362915 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109804156 chr1:109804157 nonsynonymous SNV 0.870 4 22 hm5C_associated_SNPs_22956 0 0 1 0 2 CELSR2 chr1:109804250 5'GT 109804250 Upstream 94bp
chr6 168363191 168363191 1 + G C GBM 168363202 + 168363182 168363222 41 GCGAGGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG GCGAGGCAACAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG < 41bp 1 0.260764257099303 1 0.548432230949402 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363202 chr6:168363191 nonsynonymous SNV 0.101 4 10 hm5C_associated_SNPs_22958 0 0 1 0 3 AFDN chr6:168363113 3'AG 168363113 Downstream 79bp
chr6 168363191 168363191 1 + G C GBM 168363202 + 168363182 168363222 41 GCGAGGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG GCGAGGCAACAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG < 41bp 1 0.260764257099303 1 0.548432230949402 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363202 chr6:168363191 nonsynonymous SNV 0.101 4 10 hm5C_associated_SNPs_22958 0 0 1 0 3 AFDN chr6:168363119 3'AG 168363119 Downstream 73bp
chr6 168363191 168363191 1 + G C GBM 168363202 + 168363182 168363222 41 GCGAGGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG GCGAGGCAACAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG < 41bp 1 0.260764257099303 1 0.548432230949402 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363202 chr6:168363191 nonsynonymous SNV 0.101 4 10 hm5C_associated_SNPs_22958 0 0 1 0 3 AFDN chr6:168363247 5'GT 168363247 Upstream 57bp
chr1 22333423 22333423 1 + G A GBM 22333404 + 22333384 22333424 41 CTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGT CTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCAT < 41bp 1 0.288563658018518 1 0.159157246351242 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333404 chr1:22333423 nonsynonymous SNV 0.243 3 40 hm5C_associated_SNPs_22959 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 53bp
chr1 22333423 22333423 1 + G A GBM 22333404 + 22333384 22333424 41 CTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGT CTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCAT < 41bp 1 0.288563658018518 1 0.159157246351242 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333404 chr1:22333423 nonsynonymous SNV 0.243 3 40 hm5C_associated_SNPs_22959 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 85bp
chr1 22333423 22333423 1 + G A GBM 22333406 + 22333386 22333426 41 CATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCC CATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCATCC < 41bp 1 0.33787923856757 1 0.0488027036190033 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333406 chr1:22333423 nonsynonymous SNV 0.243 3 38 hm5C_associated_SNPs_22960 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 53bp
chr1 22333423 22333423 1 + G A GBM 22333406 + 22333386 22333426 41 CATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCC CATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCATCC < 41bp 1 0.33787923856757 1 0.0488027036190033 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333406 chr1:22333423 nonsynonymous SNV 0.243 3 38 hm5C_associated_SNPs_22960 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 85bp
chr1 22333423 22333423 1 + G A GBM 22333407 + 22333387 22333427 41 ATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCCA ATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCATCCA < 41bp 1 0.243245868070818 1 0.152420431375504 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333407 chr1:22333423 nonsynonymous SNV 0.243 3 37 hm5C_associated_SNPs_22961 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 53bp
chr1 22333423 22333423 1 + G A GBM 22333407 + 22333387 22333427 41 ATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCCA ATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCATCCA < 41bp 1 0.243245868070818 1 0.152420431375504 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333407 chr1:22333423 nonsynonymous SNV 0.243 3 37 hm5C_associated_SNPs_22961 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 85bp
chr1 22333423 22333423 1 + G A GBM 22333408 + 22333388 22333428 41 TCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCCAG TCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCATCCAG < 41bp 1 0.668937372830471 1 0.389288663864136 experiment 0.662125254339058 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333408 chr1:22333423 nonsynonymous SNV 0.243 3 36 hm5C_associated_SNPs_22962 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 53bp
chr1 22333423 22333423 1 + G A GBM 22333408 + 22333388 22333428 41 TCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCCAG TCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCATCCAG < 41bp 1 0.668937372830471 1 0.389288663864136 experiment 0.662125254339058 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333408 chr1:22333423 nonsynonymous SNV 0.243 3 36 hm5C_associated_SNPs_22962 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 85bp
chr1 22333423 22333423 1 + G A GBM 22333421 + 22333401 22333441 41 CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC CAGCGCCCAGCTGGGAGATGCCATCCAGCTCGCCTCACTCC < 41bp 1 0.0612798570626656 1 0.0258382856845856 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333421 chr1:22333423 nonsynonymous SNV 0.243 3 23 hm5C_associated_SNPs_22963 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 53bp
chr1 22333423 22333423 1 + G A GBM 22333421 + 22333401 22333441 41 CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC CAGCGCCCAGCTGGGAGATGCCATCCAGCTCGCCTCACTCC < 41bp 1 0.0612798570626656 1 0.0258382856845856 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333421 chr1:22333423 nonsynonymous SNV 0.243 3 23 hm5C_associated_SNPs_22963 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 85bp
chr1 22333423 22333423 1 + G A GBM 22333422 + 22333402 22333442 41 AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC AGCGCCCAGCTGGGAGATGCCATCCAGCTCGCCTCACTCCC < 41bp 1 0.291317184198637 1 0.162711173295975 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333422 chr1:22333423 nonsynonymous SNV 0.243 3 22 hm5C_associated_SNPs_22964 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 53bp
chr1 22333423 22333423 1 + G A GBM 22333422 + 22333402 22333442 41 AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC AGCGCCCAGCTGGGAGATGCCATCCAGCTCGCCTCACTCCC < 41bp 1 0.291317184198637 1 0.162711173295975 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333422 chr1:22333423 nonsynonymous SNV 0.243 3 22 hm5C_associated_SNPs_22964 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 85bp
chr1 22333423 22333423 1 + G A GBM 22333425 + 22333405 22333445 41 GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC GCCCAGCTGGGAGATGCCATCCAGCTCGCCTCACTCCCTCC < 41bp 1 0.463482490550631 1 0.864352941513062 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333425 chr1:22333423 nonsynonymous SNV 0.243 3 19 hm5C_associated_SNPs_22965 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 53bp
chr1 22333423 22333423 1 + G A GBM 22333425 + 22333405 22333445 41 GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC GCCCAGCTGGGAGATGCCATCCAGCTCGCCTCACTCCCTCC < 41bp 1 0.463482490550631 1 0.864352941513062 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333425 chr1:22333423 nonsynonymous SNV 0.243 3 19 hm5C_associated_SNPs_22965 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 85bp
chr1 22333423 22333423 1 + G A GBM 22333426 + 22333406 22333446 41 CCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCC CCCAGCTGGGAGATGCCATCCAGCTCGCCTCACTCCCTCCC < 41bp 1 0.647780830505257 1 0.739835858345032 experiment 0.704438338989486 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333426 chr1:22333423 nonsynonymous SNV 0.243 3 18 hm5C_associated_SNPs_22966 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 53bp
chr1 22333423 22333423 1 + G A GBM 22333426 + 22333406 22333446 41 CCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCC CCCAGCTGGGAGATGCCATCCAGCTCGCCTCACTCCCTCCC < 41bp 1 0.647780830505257 1 0.739835858345032 experiment 0.704438338989486 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333426 chr1:22333423 nonsynonymous SNV 0.243 3 18 hm5C_associated_SNPs_22966 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 85bp
chr1 22333423 22333423 1 + G A GBM 22333429 + 22333409 22333449 41 AGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCT AGCTGGGAGATGCCATCCAGCTCGCCTCACTCCCTCCCGCT < 41bp 1 0.629388699387016 1 0.328613996505737 experiment 0.741222601225968 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333429 chr1:22333423 nonsynonymous SNV 0.243 3 15 hm5C_associated_SNPs_22967 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 53bp
chr1 22333423 22333423 1 + G A GBM 22333429 + 22333409 22333449 41 AGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCT AGCTGGGAGATGCCATCCAGCTCGCCTCACTCCCTCCCGCT < 41bp 1 0.629388699387016 1 0.328613996505737 experiment 0.741222601225968 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333429 chr1:22333423 nonsynonymous SNV 0.243 3 15 hm5C_associated_SNPs_22967 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 85bp
chr1 22333423 22333423 1 + G A GBM 22333431 + 22333411 22333451 41 CTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGG CTGGGAGATGCCATCCAGCTCGCCTCACTCCCTCCCGCTGG < 41bp 1 0.641500846041797 1 0.515120983123779 experiment 0.716998307916406 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333431 chr1:22333423 nonsynonymous SNV 0.243 3 13 hm5C_associated_SNPs_22968 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 53bp
chr1 22333423 22333423 1 + G A GBM 22333431 + 22333411 22333451 41 CTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGG CTGGGAGATGCCATCCAGCTCGCCTCACTCCCTCCCGCTGG < 41bp 1 0.641500846041797 1 0.515120983123779 experiment 0.716998307916406 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333431 chr1:22333423 nonsynonymous SNV 0.243 3 13 hm5C_associated_SNPs_22968 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 85bp
chr1 22333423 22333423 1 + G A GBM 22333433 + 22333413 22333453 41 GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG GGGAGATGCCATCCAGCTCGCCTCACTCCCTCCCGCTGGTG < 41bp 1 0.245173987745755 1 0.143548429012299 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333433 chr1:22333423 nonsynonymous SNV 0.243 3 11 hm5C_associated_SNPs_22969 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 53bp
chr1 22333423 22333423 1 + G A GBM 22333433 + 22333413 22333453 41 GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG GGGAGATGCCATCCAGCTCGCCTCACTCCCTCCCGCTGGTG < 41bp 1 0.245173987745755 1 0.143548429012299 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333433 chr1:22333423 nonsynonymous SNV 0.243 3 11 hm5C_associated_SNPs_22969 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 85bp
chr1 22333423 22333423 1 + G A GBM 22333434 + 22333414 22333454 41 GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA GGAGATGCCATCCAGCTCGCCTCACTCCCTCCCGCTGGTGA < 41bp 1 0.175805167287364 1 0.178592652082443 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333434 chr1:22333423 nonsynonymous SNV 0.243 3 10 hm5C_associated_SNPs_22970 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 53bp
chr1 22333423 22333423 1 + G A GBM 22333434 + 22333414 22333454 41 GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA GGAGATGCCATCCAGCTCGCCTCACTCCCTCCCGCTGGTGA < 41bp 1 0.175805167287364 1 0.178592652082443 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333434 chr1:22333423 nonsynonymous SNV 0.243 3 10 hm5C_associated_SNPs_22970 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 85bp
chr1 22333423 22333423 1 + G A GBM 22333436 + 22333416 22333456 41 AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA AGATGCCATCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA < 41bp 1 0.106685761096618 1 0.162424147129059 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333436 chr1:22333423 nonsynonymous SNV 0.243 3 8 hm5C_associated_SNPs_22971 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 53bp
chr1 22333423 22333423 1 + G A GBM 22333436 + 22333416 22333456 41 AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA AGATGCCATCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA < 41bp 1 0.106685761096618 1 0.162424147129059 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333436 chr1:22333423 nonsynonymous SNV 0.243 3 8 hm5C_associated_SNPs_22971 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 85bp
chr1 22333423 22333423 1 + G A GBM 22333438 + 22333418 22333458 41 ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC ATGCCATCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC < 41bp 1 0.344793475681887 1 0.0807304978370667 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333438 chr1:22333423 nonsynonymous SNV 0.243 3 6 hm5C_associated_SNPs_22972 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 53bp
chr1 22333423 22333423 1 + G A GBM 22333438 + 22333418 22333458 41 ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC ATGCCATCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC < 41bp 1 0.344793475681887 1 0.0807304978370667 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333438 chr1:22333423 nonsynonymous SNV 0.243 3 6 hm5C_associated_SNPs_22972 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 85bp
chr1 22333423 22333423 1 + G A GBM 22333440 + 22333420 22333460 41 GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT GCCATCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT < 41bp 1 0.0981137804512978 1 0.104019165039062 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333440 chr1:22333423 nonsynonymous SNV 0.243 3 4 hm5C_associated_SNPs_22973 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 53bp
chr1 22333423 22333423 1 + G A GBM 22333440 + 22333420 22333460 41 GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT GCCATCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT < 41bp 1 0.0981137804512978 1 0.104019165039062 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333440 chr1:22333423 nonsynonymous SNV 0.243 3 4 hm5C_associated_SNPs_22973 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 85bp
chr1 22333423 22333423 1 + G A GBM 22333441 + 22333421 22333461 41 CCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTT CCATCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTT < 41bp 1 0.0548121309359509 1 0.0468075573444366 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333441 chr1:22333423 nonsynonymous SNV 0.243 3 3 hm5C_associated_SNPs_22974 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 53bp
chr1 22333423 22333423 1 + G A GBM 22333441 + 22333421 22333461 41 CCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTT CCATCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTT < 41bp 1 0.0548121309359509 1 0.0468075573444366 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333441 chr1:22333423 nonsynonymous SNV 0.243 3 3 hm5C_associated_SNPs_22974 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 85bp
chr1 22333423 22333423 1 + G A GBM 22333442 + 22333422 22333462 41 CGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTC CATCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTC < 41bp 1 0.39589652194216 1 0.319704592227936 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333442 chr1:22333423 nonsynonymous SNV 0.243 3 2 hm5C_associated_SNPs_22975 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 53bp
chr1 22333423 22333423 1 + G A GBM 22333442 + 22333422 22333462 41 CGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTC CATCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTC < 41bp 1 0.39589652194216 1 0.319704592227936 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333442 chr1:22333423 nonsynonymous SNV 0.243 3 2 hm5C_associated_SNPs_22975 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 85bp
chr6 150290460 150290460 1 + T G GBM 150290478 + 150290458 150290498 41 AATTTTTGATGTACTGGGAACAAATGCTGGATCCAACAAGT AAGTTTTGATGTACTGGGAACAAATGCTGGATCCAACAAGT < 41bp 1 0.215228722947102 1 0.32590651512146 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ULBP1 ENSG00000111981 CDS Human protein_coding chr6:150290478 chr6:150290460 nonsynonymous SNV 0.001 2 3 hm5C_associated_SNPs_22976 0 0 0 0 1 ULBP1 chr6:150290496 5'GT 150290496 Upstream 37bp
chr1 26883501 26883501 1 + C T GBM 26883509 + 26883489 26883529 41 AAGCTATACCGTCGTGAGATCAAGCCACCCTTCAAGCCAGC AAGCTATACCGTTGTGAGATCAAGCCACCCTTCAAGCCAGC < 41bp 1 0.245508602393854 1 0.687900722026825 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26883509 chr1:26883501 nonsynonymous SNV 0.992 4 13 hm5C_associated_SNPs_22977 0 0 1 0 1 RPS6KA1 chr1:26883489 3'AG 26883489 Downstream 13bp
chr6 87865454 87865454 1 + G T GBM 87865437 + 87865417 87865457 41 GCGGGAGAGCCGGGTACCGGCCGTGGAAGCGGCCACCGACT GCGGGAGAGCCGGGTACCGGCCGTGGAAGCGGCCACCTACT < 41bp 1 0.435734975773683 1 0.312638431787491 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF292 ENSG00000188994 CDS Human protein_coding chr6:87865437 chr6:87865454 nonsynonymous SNV 0.879 1 38 hm5C_associated_SNPs_22978 0 0 1 0 1 ZNF292 chr6:87865477 5'GT 87865477 Upstream 24bp
chrX 96212894 96212894 1 + G T GBM 96212876 + 96212856 96212896 41 TCCAGGTCCTCCTGCAGCACCTCCATTGCCAGGTGTAGGGC TCCAGGTCCTCCTGCAGCACCTCCATTGCCAGGTGTAGTGC < 41bp 1 0.698094662670068 1 0.882717132568359 experiment 0.603810674659864 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control DIAPH2 ENSG00000147202 CDS Human protein_coding chrX:96212876 chrX:96212894 nonsynonymous SNV 0.013 0 39 hm5C_associated_SNPs_22981 0 0 0 0 1 DIAPH2 chrX:96212827 3'AG 96212827 Downstream 68bp
chr16 89759824 89759824 1 + G A GBM 89759823 + 89759803 89759843 41 CAGCGGATTTCGGCCTGGCCCGGGCCTATGGTGTCCCAGTA CAGCGGATTTCGGCCTGGCCCAGGCCTATGGTGTCCCAGTA < 41bp 1 0.575585648681713 1 0.817821741104126 experiment 0.848828702636573 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CDK10 ENSG00000185324 CDS Human protein_coding chr16:89759823 chr16:89759824 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_22982 0 0 1 0 2 CDK10 chr16:89759806 3'AG 89759806 Downstream 19bp
chr16 89759824 89759824 1 + G A GBM 89759823 + 89759803 89759843 41 CAGCGGATTTCGGCCTGGCCCGGGCCTATGGTGTCCCAGTA CAGCGGATTTCGGCCTGGCCCAGGCCTATGGTGTCCCAGTA < 41bp 1 0.575585648681713 1 0.817821741104126 experiment 0.848828702636573 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CDK10 ENSG00000185324 CDS Human protein_coding chr16:89759823 chr16:89759824 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_22982 0 0 1 0 2 CDK10 chr16:89759875 5'GT 89759875 Upstream 52bp
chr5 176519769 176519769 1 + G A GBM 176519758 + 176519738 176519778 41 ATTCCATCGGCCTCTCCTACCAGTCTGCCTGGCTCACGGTG ATTCCATCGGCCTCTCCTACCAGTCTGCCTGACTCACGGTG < 41bp 1 0.307253895566494 1 0.195961594581604 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176519758 chr5:176519769 stopgain 0.998 1 32 hm5C_associated_SNPs_22983 0 0 1 0 1 FGFR4 chr5:176519785 5'GT 176519785 Upstream 17bp
chr20 35862424 35862424 1 + G T GBM 35862428 + 35862408 35862448 41 CTCCCCATCATTCAGTGGATCCGGATTGGTGCCAATGTCTC CTCCCCATCATTCAGTTGATCCGGATTGGTGCCAATGTCTC < 41bp 1 0.564858621869767 1 0.523806571960449 experiment 0.870282756260465 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35862428 chr20:35862424 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_22984 0 0 1 0 2 RPN2 chr20:35862423 3'AG 35862423 Downstream 2bp
chr20 35862424 35862424 1 + G T GBM 35862428 + 35862408 35862448 41 CTCCCCATCATTCAGTGGATCCGGATTGGTGCCAATGTCTC CTCCCCATCATTCAGTTGATCCGGATTGGTGCCAATGTCTC < 41bp 1 0.564858621869767 1 0.523806571960449 experiment 0.870282756260465 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35862428 chr20:35862424 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_22984 0 0 1 0 2 RPN2 chr20:35862498 5'GT 35862498 Upstream 75bp
chr17 27000493 27000493 1 + G A GBM 27000491 + 27000471 27000511 41 GATGAAGGCGAGGTGGTACCCCGAGTCACCAAGAAATTTGT GATGAAGGCGAGGTGGTACCCCAAGTCACCAAGAAATTTGT < 41bp 1 0.305225247937907 1 0.471307277679443 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27000491 chr17:27000493 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_22985 0 0 1 0 1 SUPT6H chr17:27000528 5'GT 27000528 Upstream 36bp
chr7 100777094 100777094 1 + C T GBM 100777083 + 100777063 100777103 41 CTTATGAAAAAGAGGTGCCTCTCTCTGCCCTCACCAACATT CTTATGAAAAAGAGGTGCCTCTCTCTGCCCTTACCAACATT < 41bp 1 0.148058198999114 1 0.268760323524475 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100777083 chr7:100777094 synonymous SNV . 0 32 hm5C_associated_SNPs_22986 0 0 1 0 1 SERPINE1 chr7:100777174 5'GT 100777174 Upstream 81bp
chr7 100777094 100777094 1 + C T GBM 100777087 + 100777067 100777107 41 TGAAAAAGAGGTGCCTCTCTCTGCCCTCACCAACATTCTGA TGAAAAAGAGGTGCCTCTCTCTGCCCTTACCAACATTCTGA < 41bp 1 0.48696797394787 1 0.461164683103561 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100777087 chr7:100777094 synonymous SNV . 0 28 hm5C_associated_SNPs_22987 0 0 1 0 1 SERPINE1 chr7:100777174 5'GT 100777174 Upstream 81bp
chr7 66489935 66489935 1 + G T GBM 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGTACCATCAGAGCCTAAATTCCATT < 41bp 1 0.521108289937427 1 0.131463557481766 experiment 0.957783420125147 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489935 nonsynonymous SNV 0.087 1 18 hm5C_associated_SNPs_22988 0 0 0 0 2 TYW1 chr7:66489887 3'AG 66489887 Downstream 49bp
chr7 66489935 66489935 1 + G T GBM 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGTACCATCAGAGCCTAAATTCCATT < 41bp 1 0.521108289937427 1 0.131463557481766 experiment 0.957783420125147 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489935 nonsynonymous SNV 0.087 1 18 hm5C_associated_SNPs_22988 0 0 0 0 2 TYW1 chr7:66490009 5'GT 66490009 Upstream 75bp
chr20 60882680 60882680 1 + C T GBM 60882662 + 60882642 60882682 41 CTCTTCGCAGCTCCCGGAGCCAGTCGGCAGCGGTCACCCCG CTCTTCGCAGCTCCCGGAGCCAGTCGGCAGCGGTCACCTCG < 41bp 1 0.302726443807576 1 0.514996588230133 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882662 chr20:60882680 nonsynonymous SNV 0.954 1 39 hm5C_associated_SNPs_22989 0 0 1 0 1 ADRM1 chr20:60882652 3'AG 60882652 Downstream 29bp
chr11 314342 314342 1 + G A GBM 314324 + 314304 314344 41 TCTTCTTGAACTGGTGCTGTCTGGGCTTCATAGCATTCGCC TCTTCTTGAACTGGTGCTGTCTGGGCTTCATAGCATTCACC < 41bp 1 0.793916699092592 1 0.411554336547852 experiment 0.412166601814815 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control IFITM1 ENSG00000185885 CDS Human protein_coding chr11:314324 chr11:314342 nonsynonymous SNV 0.001 1 39 hm5C_associated_SNPs_22990 0 0 1 0 1 IFITM1 chr11:314356 5'GT 314356 Upstream 15bp
chr17 65735126 65735126 1 + G A GBM 65735123 + 65735103 65735143 41 GACATCCCAGCACAGCATATCACGGTAAGTGTTCATACAAG GACATCCCAGCACAGCATATCACAGTAAGTGTTCATACAAG < 41bp 1 0.496954772994055 1 0.288639783859253 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65735123 chr17:65735126 synonymous SNV . 0 24 hm5C_associated_SNPs_22991 0 0 1 0 2 NOL11 chr17:65735048 3'AG 65735048 Downstream 79bp
chr17 65735126 65735126 1 + G A GBM 65735123 + 65735103 65735143 41 GACATCCCAGCACAGCATATCACGGTAAGTGTTCATACAAG GACATCCCAGCACAGCATATCACAGTAAGTGTTCATACAAG < 41bp 1 0.496954772994055 1 0.288639783859253 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65735123 chr17:65735126 synonymous SNV . 0 24 hm5C_associated_SNPs_22991 0 0 1 0 2 NOL11 chr17:65735126 5'GT 65735126 Upstream 1bp
chr17 33328359 33328359 1 + T C GBM 33328374 + 33328354 33328394 41 TTCCCTCGCTGCACCCGAATCCGAGATGATAAGGACTGGAA TTCCCCCGCTGCACCCGAATCCGAGATGATAAGGACTGGAA < 41bp 1 0.422779306404397 1 0.667318761348724 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33328374 chr17:33328359 synonymous SNV . 0 6 hm5C_associated_SNPs_22992 0 0 0 0 2 LIG3 chr17:33328276 3'AG 33328276 Downstream 84bp
chr17 33328359 33328359 1 + T C GBM 33328374 + 33328354 33328394 41 TTCCCTCGCTGCACCCGAATCCGAGATGATAAGGACTGGAA TTCCCCCGCTGCACCCGAATCCGAGATGATAAGGACTGGAA < 41bp 1 0.422779306404397 1 0.667318761348724 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33328374 chr17:33328359 synonymous SNV . 0 6 hm5C_associated_SNPs_22992 0 0 0 0 2 LIG3 chr17:33328422 5'GT 33328422 Upstream 64bp
chr1 22329556 22329556 1 + C T GBM 22329560 + 22329540 22329580 41 GTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCA GTCCATGGTGAGGATGTGGTCCCCTACAGCTGGCCCTGGCA < 41bp 1 0.267227280460079 1 0.0791512131690979 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329560 chr1:22329556 nonsynonymous SNV 0.868 1 17 hm5C_associated_SNPs_22993 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 61bp
chr1 22329556 22329556 1 + C T GBM 22329560 + 22329540 22329580 41 GTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCA GTCCATGGTGAGGATGTGGTCCCCTACAGCTGGCCCTGGCA < 41bp 1 0.267227280460079 1 0.0791512131690979 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329560 chr1:22329556 nonsynonymous SNV 0.868 1 17 hm5C_associated_SNPs_22993 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 26bp
chr1 22329556 22329556 1 + C T GBM 22329561 + 22329541 22329581 41 TCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAG TCCATGGTGAGGATGTGGTCCCCTACAGCTGGCCCTGGCAG < 41bp 1 0.255058525483838 1 0.221019387245178 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329561 chr1:22329556 nonsynonymous SNV 0.868 1 16 hm5C_associated_SNPs_22994 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 61bp
chr1 22329556 22329556 1 + C T GBM 22329561 + 22329541 22329581 41 TCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAG TCCATGGTGAGGATGTGGTCCCCTACAGCTGGCCCTGGCAG < 41bp 1 0.255058525483838 1 0.221019387245178 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329561 chr1:22329556 nonsynonymous SNV 0.868 1 16 hm5C_associated_SNPs_22994 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 26bp
chr1 22329556 22329556 1 + C T GBM 22329562 + 22329542 22329582 41 CCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGG CCATGGTGAGGATGTGGTCCCCTACAGCTGGCCCTGGCAGG < 41bp 1 0.0553917298057694 1 0.217006742954254 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329562 chr1:22329556 nonsynonymous SNV 0.868 1 15 hm5C_associated_SNPs_22995 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 61bp
chr1 22329556 22329556 1 + C T GBM 22329562 + 22329542 22329582 41 CCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGG CCATGGTGAGGATGTGGTCCCCTACAGCTGGCCCTGGCAGG < 41bp 1 0.0553917298057694 1 0.217006742954254 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329562 chr1:22329556 nonsynonymous SNV 0.868 1 15 hm5C_associated_SNPs_22995 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 26bp
chr1 22329556 22329556 1 + C T GBM 22329563 + 22329543 22329583 41 CATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGT CATGGTGAGGATGTGGTCCCCTACAGCTGGCCCTGGCAGGT < 41bp 1 0.730340357264935 1 0.610136926174164 experiment 0.53931928547013 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329563 chr1:22329556 nonsynonymous SNV 0.868 1 14 hm5C_associated_SNPs_22996 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 61bp
chr1 22329556 22329556 1 + C T GBM 22329563 + 22329543 22329583 41 CATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGT CATGGTGAGGATGTGGTCCCCTACAGCTGGCCCTGGCAGGT < 41bp 1 0.730340357264935 1 0.610136926174164 experiment 0.53931928547013 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329563 chr1:22329556 nonsynonymous SNV 0.868 1 14 hm5C_associated_SNPs_22996 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 26bp
chr1 22329556 22329556 1 + C T GBM 22329566 + 22329546 22329586 41 GGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAG GGTGAGGATGTGGTCCCCTACAGCTGGCCCTGGCAGGTAAG < 41bp 1 0.56125240472907 1 0.344043374061584 experiment 0.87749519054186 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329566 chr1:22329556 nonsynonymous SNV 0.868 1 11 hm5C_associated_SNPs_22997 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 61bp
chr1 22329556 22329556 1 + C T GBM 22329566 + 22329546 22329586 41 GGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAG GGTGAGGATGTGGTCCCCTACAGCTGGCCCTGGCAGGTAAG < 41bp 1 0.56125240472907 1 0.344043374061584 experiment 0.87749519054186 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329566 chr1:22329556 nonsynonymous SNV 0.868 1 11 hm5C_associated_SNPs_22997 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 26bp
chr1 22329556 22329556 1 + C T GBM 22329569 + 22329549 22329589 41 GAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGC GAGGATGTGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGC < 41bp 1 0.372003293345547 1 0.428740411996841 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329569 chr1:22329556 nonsynonymous SNV 0.868 1 8 hm5C_associated_SNPs_22998 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 61bp
chr1 22329556 22329556 1 + C T GBM 22329569 + 22329549 22329589 41 GAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGC GAGGATGTGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGC < 41bp 1 0.372003293345547 1 0.428740411996841 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329569 chr1:22329556 nonsynonymous SNV 0.868 1 8 hm5C_associated_SNPs_22998 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 26bp
chr1 22329556 22329556 1 + C T GBM 22329573 + 22329553 22329593 41 ATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATA ATGTGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATA < 41bp 1 0.0824643624588094 1 0.0231782793998718 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329573 chr1:22329556 nonsynonymous SNV 0.868 1 4 hm5C_associated_SNPs_22999 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 61bp
chr1 22329556 22329556 1 + C T GBM 22329573 + 22329553 22329593 41 ATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATA ATGTGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATA < 41bp 1 0.0824643624588094 1 0.0231782793998718 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329573 chr1:22329556 nonsynonymous SNV 0.868 1 4 hm5C_associated_SNPs_22999 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 26bp
chr1 22329556 22329556 1 + C T GBM 22329574 + 22329554 22329594 41 TGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAG TGTGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAG < 41bp 1 0.0989985883605804 1 0.0668187439441681 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329574 chr1:22329556 nonsynonymous SNV 0.868 1 3 hm5C_associated_SNPs_23000 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 61bp
chr1 22329556 22329556 1 + C T GBM 22329574 + 22329554 22329594 41 TGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAG TGTGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAG < 41bp 1 0.0989985883605804 1 0.0668187439441681 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329574 chr1:22329556 nonsynonymous SNV 0.868 1 3 hm5C_associated_SNPs_23000 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 26bp
chr1 22329556 22329556 1 + C T GBM 22329575 + 22329555 22329595 41 GCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAGC GTGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAGC < 41bp 1 0.26400354865598 1 0.0828120410442352 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329575 chr1:22329556 nonsynonymous SNV 0.868 1 2 hm5C_associated_SNPs_23001 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 61bp
chr1 22329556 22329556 1 + C T GBM 22329575 + 22329555 22329595 41 GCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAGC GTGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAGC < 41bp 1 0.26400354865598 1 0.0828120410442352 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329575 chr1:22329556 nonsynonymous SNV 0.868 1 2 hm5C_associated_SNPs_23001 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 26bp
chr19 45912970 45912970 1 - A G GBM 45912980 - 45912960 45913000 41 TTCTCCCTCCCATCCAGGCCCGGAGGCTGTTTGATGTCCTG TTCTCCCTCCCATCCAGGCCCGGAGGCTGTCTGATGTCCTG < 41bp 1 0.468236828067477 1 0.449113488197327 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ERCC1 ENSG00000012061 CDS Human protein_coding chr19:45912980 chr19:45912970 nonsynonymous SNV 0.984 0 31 hm5C_associated_SNPs_23004 0 0 0 0 1 ERCC1 chr19:45912983 3'AG 45912983 Downstream 14bp
chr1 6271141 6271141 1 + C T GBM 6271142 + 6271122 6271162 41 GCCACTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTG GCCACTGCTGCTGCTGGGGTCACGTCGGGTGGCAGCTGCTG < 41bp 1 0.460103261699067 1 0.249319285154343 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF207 ENSG00000158286 CDS Human protein_coding chr1:6271142 chr1:6271141 nonsynonymous SNV 0.548 0 20 hm5C_associated_SNPs_23005 0 0 1 0 2 RNF207 chr1:6271081 3'AG 6271081 Downstream 61bp
chr1 6271141 6271141 1 + C T GBM 6271142 + 6271122 6271162 41 GCCACTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTG GCCACTGCTGCTGCTGGGGTCACGTCGGGTGGCAGCTGCTG < 41bp 1 0.460103261699067 1 0.249319285154343 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF207 ENSG00000158286 CDS Human protein_coding chr1:6271142 chr1:6271141 nonsynonymous SNV 0.548 0 20 hm5C_associated_SNPs_23005 0 0 1 0 2 RNF207 chr1:6271178 5'GT 6271178 Upstream 38bp
chr2 36764638 36764638 1 + C T GBM 36764635 + 36764615 36764655 41 CGACCGTCAGCTGCCCCCCTCTGCCCTGTGTTGAGCCCATC CGACCGTCAGCTGCCCCCCTCTGTCCTGTGTTGAGCCCATC < 41bp 1 0.156975976384732 1 0.353804349899292 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36764635 chr2:36764638 nonsynonymous SNV 0.907 3 24 hm5C_associated_SNPs_23006 0 0 0 0 1 CRIM1 chr2:36764689 5'GT 36764689 Upstream 52bp
chr15 69652448 69652448 1 + T C GBM 69652440 + 69652420 69652460 41 ATGCTGAGCCTGAAGCTCCCCAGGCTGTTTAGCATAGACCA ATGCTGAGCCTGAAGCTCCCCAGGCTGTCTAGCATAGACCA < 41bp 1 0.661221604862177 1 0.781709313392639 experiment 0.677556790275645 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69652440 chr15:69652448 nonsynonymous SNV 0.022 1 29 hm5C_associated_SNPs_23007 0 0 0 0 1 PAQR5 chr15:69652470 5'GT 69652470 Upstream 23bp
chr10 128810562 128810562 1 + G A GBM 128810545 + 128810525 128810565 41 AGCCGCTGAACATGTCATCCCGTTTTTCACCCAGGGTGGCA AGCCGCTGAACATGTCATCCCGTTTTTCACCCAGGGTAGCA < 41bp 1 0.0610467783599185 1 0.01605623960495 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DOCK1 ENSG00000150760 CDS Human antisense chr10:128810545 chr10:128810562 synonymous SNV . 0 38 hm5C_associated_SNPs_23008 0 0 1 0 2 DOCK1 chr10:128810496 3'AG 128810496 Downstream 67bp
chr10 128810562 128810562 1 + G A GBM 128810545 + 128810525 128810565 41 AGCCGCTGAACATGTCATCCCGTTTTTCACCCAGGGTGGCA AGCCGCTGAACATGTCATCCCGTTTTTCACCCAGGGTAGCA < 41bp 1 0.0610467783599185 1 0.01605623960495 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:128810545 chr10:128810562 synonymous SNV . 0 38 hm5C_associated_SNPs_23008 0 0 1 0 2 DOCK1 chr10:128810559 3'AG 128810559 Downstream 4bp
chr15 91358357 91358357 1 + T C GBM 91358341 + 91358321 91358361 41 TCACATTTCAGGGGGTCTGCCACATGTAGAAAGATATCTTC TCACATTTCAGGGGGTCTGCCACATGTAGAAAGATACCTTC < 41bp 1 0.453067808328448 1 0.503970682621002 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91358341 chr15:91358357 nonsynonymous SNV 0.004 0 37 hm5C_associated_SNPs_23016 1 0 1 0 1 BLM chr15:91358332 3'AG 91358332 Downstream 26bp
chr15 91358357 91358357 1 + T C GBM 91358367 + 91358347 91358387 41 TAGAAAGATATCTTCCAAAACGAAATCCTCCAGCATCATTG TAGAAAGATACCTTCCAAAACGAAATCCTCCAGCATCATTG < 41bp 1 0.648378838851225 1 0.0550813674926758 experiment 0.70324232229755 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91358367 chr15:91358357 nonsynonymous SNV 0.004 0 11 hm5C_associated_SNPs_23017 1 0 1 0 1 BLM chr15:91358332 3'AG 91358332 Downstream 26bp
chr2 219677652 219677652 1 + A C GBM 219677655 + 219677635 219677675 41 TTGCTTTCACAGGGAAGAAGCTGATTGATGAGAAGCTCGAA TTGCTTTCACAGGGAAGCAGCTGATTGATGAGAAGCTCGAA < 41bp 1 0.214400811550647 1 0.104777783155441 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219677655 chr2:219677652 nonsynonymous SNV 0.996 0 18 hm5C_associated_SNPs_23018 0 0 1 0 1 CYP27A1 chr2:219677647 3'AG 219677647 Downstream 6bp
chr3 9976243 9976243 1 + C A GBM 9976249 + 9976229 9976269 41 AGTCTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGC AGTCTTCTCCCCCGACTCAGCCCCATCCGTGTCATACCTGC < 41bp 1 0.510392679486097 1 0.149735063314438 experiment 0.979214641027806 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976249 chr3:9976243 nonsynonymous SNV 0.055 0 15 hm5C_associated_SNPs_23025 0 0 1 0 1 CRELD1 chr3:9976296 5'GT 9976296 Upstream 54bp
chr3 9976243 9976243 1 + C A GBM 9976251 + 9976231 9976271 41 TCTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGCCG TCTTCTCCCCCGACTCAGCCCCATCCGTGTCATACCTGCCG < 41bp 1 0.0316432458421591 1 0.0389211773872375 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976251 chr3:9976243 nonsynonymous SNV 0.055 0 13 hm5C_associated_SNPs_23026 0 0 1 0 1 CRELD1 chr3:9976296 5'GT 9976296 Upstream 54bp
chr3 9976243 9976243 1 + C A GBM 9976252 + 9976232 9976272 41 CTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGCCGG CTTCTCCCCCGACTCAGCCCCATCCGTGTCATACCTGCCGG < 41bp 1 0.177158875633906 1 0.236741662025452 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976252 chr3:9976243 nonsynonymous SNV 0.055 0 12 hm5C_associated_SNPs_23027 0 0 1 0 1 CRELD1 chr3:9976296 5'GT 9976296 Upstream 54bp
chr20 55968365 55968365 1 + C G GBM 55968352 + 55968332 55968372 41 TAGGCTTTGCCATTGGGGTGCAGCAGCTGCACCCCACCTTG TAGGCTTTGCCATTGGGGTGCAGCAGCTGCACCGCACCTTG < 41bp 1 0.452228377159081 1 0.348135381937027 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968352 chr20:55968365 nonsynonymous SNV 0.982 4 34 hm5C_associated_SNPs_23028 0 0 1 0 2 RBM38 chr20:55968335 3'AG 55968335 Downstream 31bp
chr20 55968365 55968365 1 + C G GBM 55968352 + 55968332 55968372 41 TAGGCTTTGCCATTGGGGTGCAGCAGCTGCACCCCACCTTG TAGGCTTTGCCATTGGGGTGCAGCAGCTGCACCGCACCTTG < 41bp 1 0.452228377159081 1 0.348135381937027 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968352 chr20:55968365 nonsynonymous SNV 0.982 4 34 hm5C_associated_SNPs_23028 0 0 1 0 2 RBM38 chr20:55968389 5'GT 55968389 Upstream 25bp
chr20 55968365 55968365 1 + C G GBM 55968361 + 55968341 55968381 41 CCATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGG CCATTGGGGTGCAGCAGCTGCACCGCACCTTGATCCAGCGG < 41bp 1 0.27797974174315 1 0.263059079647064 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968361 chr20:55968365 nonsynonymous SNV 0.982 4 25 hm5C_associated_SNPs_23029 0 0 1 0 2 RBM38 chr20:55968335 3'AG 55968335 Downstream 31bp
chr20 55968365 55968365 1 + C G GBM 55968361 + 55968341 55968381 41 CCATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGG CCATTGGGGTGCAGCAGCTGCACCGCACCTTGATCCAGCGG < 41bp 1 0.27797974174315 1 0.263059079647064 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968361 chr20:55968365 nonsynonymous SNV 0.982 4 25 hm5C_associated_SNPs_23029 0 0 1 0 2 RBM38 chr20:55968389 5'GT 55968389 Upstream 25bp
chr20 55968365 55968365 1 + C G GBM 55968363 + 55968343 55968383 41 ATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGAC ATTGGGGTGCAGCAGCTGCACCGCACCTTGATCCAGCGGAC < 41bp 1 0.423018584085818 1 0.259656518697739 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968363 chr20:55968365 nonsynonymous SNV 0.982 4 23 hm5C_associated_SNPs_23030 0 0 1 0 2 RBM38 chr20:55968335 3'AG 55968335 Downstream 31bp
chr20 55968365 55968365 1 + C G GBM 55968363 + 55968343 55968383 41 ATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGAC ATTGGGGTGCAGCAGCTGCACCGCACCTTGATCCAGCGGAC < 41bp 1 0.423018584085818 1 0.259656518697739 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968363 chr20:55968365 nonsynonymous SNV 0.982 4 23 hm5C_associated_SNPs_23030 0 0 1 0 2 RBM38 chr20:55968389 5'GT 55968389 Upstream 25bp
chr20 55968365 55968365 1 + C G GBM 55968364 + 55968344 55968384 41 TTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACT TTGGGGTGCAGCAGCTGCACCGCACCTTGATCCAGCGGACT < 41bp 1 0.0675879750372186 1 0.153093636035919 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968364 chr20:55968365 nonsynonymous SNV 0.982 4 22 hm5C_associated_SNPs_23031 0 0 1 0 2 RBM38 chr20:55968335 3'AG 55968335 Downstream 31bp
chr20 55968365 55968365 1 + C G GBM 55968364 + 55968344 55968384 41 TTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACT TTGGGGTGCAGCAGCTGCACCGCACCTTGATCCAGCGGACT < 41bp 1 0.0675879750372186 1 0.153093636035919 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968364 chr20:55968365 nonsynonymous SNV 0.982 4 22 hm5C_associated_SNPs_23031 0 0 1 0 2 RBM38 chr20:55968389 5'GT 55968389 Upstream 25bp
chr20 55968365 55968365 1 + C G GBM 55968366 + 55968346 55968386 41 GGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACTTA GGGGTGCAGCAGCTGCACCGCACCTTGATCCAGCGGACTTA < 41bp 1 0.211856332363652 1 0.0660496950149536 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968366 chr20:55968365 nonsynonymous SNV 0.982 4 20 hm5C_associated_SNPs_23032 0 0 1 0 2 RBM38 chr20:55968335 3'AG 55968335 Downstream 31bp
chr20 55968365 55968365 1 + C G GBM 55968366 + 55968346 55968386 41 GGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACTTA GGGGTGCAGCAGCTGCACCGCACCTTGATCCAGCGGACTTA < 41bp 1 0.211856332363652 1 0.0660496950149536 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968366 chr20:55968365 nonsynonymous SNV 0.982 4 20 hm5C_associated_SNPs_23032 0 0 1 0 2 RBM38 chr20:55968389 5'GT 55968389 Upstream 25bp
chr4 79399128 79399128 1 + G A GBM 79399112 + 79399092 79399132 41 GAATTCACCCAGGCGAAGGTCATTATCAACGATACCGAGGA GAATTCACCCAGGCGAAGGTCATTATCAACGATACCAAGGA < 41bp 1 0.070132986999483 1 0.0905697345733643 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79399112 chr4:79399128 nonsynonymous SNV 0.318 3 37 hm5C_associated_SNPs_23033 0 0 1 0 1 FRAS1 chr4:79399215 5'GT 79399215 Upstream 88bp
chr17 48433460 48433460 1 + G A GBM 48433472 + 48433452 48433492 41 TTCCACACGGTGCTGGAGAACAGCCTGGCCTGTGAGACCCT TTCCACACAGTGCTGGAGAACAGCCTGGCCTGTGAGACCCT < 41bp 1 0.333790970979409 1 0.299581617116928 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48433472 chr17:48433460 synonymous SNV . 0 9 hm5C_associated_SNPs_23034 0 0 1 0 1 XYLT2 chr17:48433446 3'AG 48433446 Downstream 15bp
chr9 131088069 131088069 1 + G A GBM 131088068 + 131088048 131088088 41 TGCCTTTCAGGGAGCGTCCCCGGATTTCGACATCCACCCTC TGCCTTTCAGGGAGCGTCCCCAGATTTCGACATCCACCCTC < 41bp 1 0.730241601501646 1 0.613592982292175 experiment 0.539516796996707 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COQ4 ENSG00000167113 CDS Human protein_coding chr9:131088068 chr9:131088069 nonsynonymous SNV 0.802 4 22 hm5C_associated_SNPs_23035 0 0 1 0 2 COQ4 chr9:131088058 3'AG 131088058 Downstream 12bp
chr9 131088069 131088069 1 + G A GBM 131088068 + 131088048 131088088 41 TGCCTTTCAGGGAGCGTCCCCGGATTTCGACATCCACCCTC TGCCTTTCAGGGAGCGTCCCCAGATTTCGACATCCACCCTC < 41bp 1 0.730241601501646 1 0.613592982292175 experiment 0.539516796996707 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COQ4 ENSG00000167113 CDS Human protein_coding chr9:131088068 chr9:131088069 nonsynonymous SNV 0.802 4 22 hm5C_associated_SNPs_23035 0 0 1 0 2 COQ4 chr9:131088160 5'GT 131088160 Upstream 92bp
chr22 32445981 32445981 1 + C T GBM 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGGACTGTTGGAGGCTTCTTCCTGGCAGGCTGAAGTATGGT < 41bp 1 0.229469427432736 1 0.35995477437973 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445981 stopgain 1.000 1 31 hm5C_associated_SNPs_23036 0 0 0 0 2 SLC5A1 chr22:32445930 3'AG 32445930 Downstream 52bp
chr22 32445981 32445981 1 + C T GBM 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGGACTGTTGGAGGCTTCTTCCTGGCAGGCTGAAGTATGGT < 41bp 1 0.229469427432736 1 0.35995477437973 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445981 stopgain 1.000 1 31 hm5C_associated_SNPs_23036 0 0 0 0 2 SLC5A1 chr22:32446001 5'GT 32446001 Upstream 21bp
chr5 179150743 179150743 1 + C T GBM 179150759 + 179150739 179150779 41 CTTCCTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAA CTTCTTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAA < 41bp 1 0.13537896387047 1 0.227688908576965 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179150759 chr5:179150743 nonsynonymous SNV 0.561 1 5 hm5C_associated_SNPs_23037 0 0 1 0 2 CANX chr5:179150661 3'AG 179150661 Downstream 83bp
chr5 179150743 179150743 1 + C T GBM 179150759 + 179150739 179150779 41 CTTCCTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAA CTTCTTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAA < 41bp 1 0.13537896387047 1 0.227688908576965 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179150759 chr5:179150743 nonsynonymous SNV 0.561 1 5 hm5C_associated_SNPs_23037 0 0 1 0 2 CANX chr5:179150780 5'GT 179150780 Upstream 38bp
chr5 179150743 179150743 1 + C T GBM 179150760 + 179150740 179150780 41 TTCCTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAAG TTCTTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAAG < 41bp 1 0.274664196145383 1 0.197727650403976 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179150760 chr5:179150743 nonsynonymous SNV 0.561 1 4 hm5C_associated_SNPs_23038 0 0 1 0 2 CANX chr5:179150661 3'AG 179150661 Downstream 83bp
chr5 179150743 179150743 1 + C T GBM 179150760 + 179150740 179150780 41 TTCCTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAAG TTCTTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAAG < 41bp 1 0.274664196145383 1 0.197727650403976 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179150760 chr5:179150743 nonsynonymous SNV 0.561 1 4 hm5C_associated_SNPs_23038 0 0 1 0 2 CANX chr5:179150780 5'GT 179150780 Upstream 38bp
chr19 14674829 14674829 1 + C T GBM 14674819 + 14674799 14674839 41 CCTAACAGAGTACGCGGGGCCCCTTTTCATCTACCTGCTCT CCTAACAGAGTACGCGGGGCCCCTTTTCATTTACCTGCTCT < 41bp 1 0.108607427793551 1 0.0783370733261108 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TECR ENSG00000099797 CDS Human protein_coding chr19:14674819 chr19:14674829 synonymous SNV . 0 31 hm5C_associated_SNPs_23039 0 0 1 0 2 TECR chr19:14674794 3'AG 14674794 Downstream 36bp
chr19 14674829 14674829 1 + C T GBM 14674819 + 14674799 14674839 41 CCTAACAGAGTACGCGGGGCCCCTTTTCATCTACCTGCTCT CCTAACAGAGTACGCGGGGCCCCTTTTCATTTACCTGCTCT < 41bp 1 0.108607427793551 1 0.0783370733261108 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TECR ENSG00000099797 CDS Human protein_coding chr19:14674819 chr19:14674829 synonymous SNV . 0 31 hm5C_associated_SNPs_23039 0 0 1 0 2 TECR chr19:14674909 5'GT 14674909 Upstream 81bp
chr19 14674829 14674829 1 + C T GBM 14674820 + 14674800 14674840 41 CTAACAGAGTACGCGGGGCCCCTTTTCATCTACCTGCTCTT CTAACAGAGTACGCGGGGCCCCTTTTCATTTACCTGCTCTT < 41bp 1 0.0304293413407903 1 0.0248109996318817 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TECR ENSG00000099797 CDS Human protein_coding chr19:14674820 chr19:14674829 synonymous SNV . 0 30 hm5C_associated_SNPs_23040 0 0 1 0 2 TECR chr19:14674794 3'AG 14674794 Downstream 36bp
chr19 14674829 14674829 1 + C T GBM 14674820 + 14674800 14674840 41 CTAACAGAGTACGCGGGGCCCCTTTTCATCTACCTGCTCTT CTAACAGAGTACGCGGGGCCCCTTTTCATTTACCTGCTCTT < 41bp 1 0.0304293413407903 1 0.0248109996318817 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TECR ENSG00000099797 CDS Human protein_coding chr19:14674820 chr19:14674829 synonymous SNV . 0 30 hm5C_associated_SNPs_23040 0 0 1 0 2 TECR chr19:14674909 5'GT 14674909 Upstream 81bp
chr3 40499407 40499407 1 + C T GBM 40499425 + 40499405 40499445 41 GGCCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAA GGTCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAA < 41bp 1 0.44607238149991 1 0.0867933332920074 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL14 ENSG00000188846 CDS Human protein_coding chr3:40499425 chr3:40499407 synonymous SNV . 0 3 hm5C_associated_SNPs_23041 0 0 1 0 1 RPL14 chr3:40499381 3'AG 40499381 Downstream 27bp
chr5 150639411 150639411 1 + C T GBM 150639408 + 150639388 150639428 41 ACTCTGGAGCCTGACCCCATCATCGTTCCTGGAAATGTGAC ACTCTGGAGCCTGACCCCATCATTGTTCCTGGAAATGTGAC < 41bp 1 0.302958136568806 1 0.109937757253647 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GM2A ENSG00000196743 CDS Human protein_coding chr5:150639408 chr5:150639411 synonymous SNV . 0 24 hm5C_associated_SNPs_23042 0 0 1 0 1 GM2A chr5:150639477 5'GT 150639477 Upstream 67bp
chr11 605204 605204 1 + A G GBM 605217 + 605197 605237 41 GTGTTGAAGCCAGTGGAGCCCTCTTTGGGGCTGCTGAGAGC GTGTTGAGGCCAGTGGAGCCCTCTTTGGGGCTGCTGAGAGC < 41bp 1 0.429368728276839 1 0.751663327217102 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:605217 chr11:605204 nonsynonymous SNV 0.034 0 8 hm5C_associated_SNPs_23043 0 0 1 0 1 PHRF1 chr11:605300 5'GT 605300 Upstream 97bp
chr22 41735890 41735890 1 + C A GBM 41735900 + 41735880 41735920 41 CCCGTGTTCCCCGGCGGGACCCCACTGCTACCACCTGTGGT CCCGTGTTCCACGGCGGGACCCCACTGCTACCACCTGTGGT < 41bp 1 0.0709426571889368 1 0.163995623588562 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41735900 chr22:41735890 nonsynonymous SNV 0.951 3 11 hm5C_associated_SNPs_23044 0 0 1 0 1 ZC3H7B chr22:41735820 3'AG 41735820 Downstream 71bp
chr19 46878972 46878972 1 + C T GBM 46878977 + 46878957 46878997 41 GGCGACGAGCACAAGCGCTCCGTGGTGGACTCGCTGGACAT GGCGACGAGCACAAGTGCTCCGTGGTGGACTCGCTGGACAT < 41bp 1 0.543654829489213 1 0.624387800693512 experiment 0.912690341021575 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46878977 chr19:46878972 nonsynonymous SNV 0.540 2 16 hm5C_associated_SNPs_23045 0 0 1 0 1 PPP5C chr19:46879008 5'GT 46879008 Upstream 37bp
chr16 16150146 16150146 1 + C T GBM 16150150 + 16150130 16150170 41 CCTGGGTCTGCACGCCCTTTCTGGTGAGTGAAGCCACATTT CCTGGGTCTGCACGCCTTTTCTGGTGAGTGAAGCCACATTT < 41bp 1 0.745990928299972 1 0.498034983873367 experiment 0.508018143400056 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16150150 chr16:16150146 synonymous SNV . 0 17 hm5C_associated_SNPs_23047 0 0 1 0 1 ABCC1 chr16:16150152 5'GT 16150152 Upstream 7bp
chr7 100485931 100485931 1 + C G GBM 100485923 + 100485903 100485943 41 CACAGGAGGCCCTCCATACCCCCATGCCCCGTATGGTGCTG CACAGGAGGCCCTCCATACCCCCATGCCGCGTATGGTGCTG < 41bp 1 0.43927887739129 1 0.224176794290543 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100485923 chr7:100485931 nonsynonymous SNV 0.108 1 29 hm5C_associated_SNPs_23048 0 0 1 0 2 SRRT chr7:100485878 3'AG 100485878 Downstream 54bp
chr7 100485931 100485931 1 + C G GBM 100485923 + 100485903 100485943 41 CACAGGAGGCCCTCCATACCCCCATGCCCCGTATGGTGCTG CACAGGAGGCCCTCCATACCCCCATGCCGCGTATGGTGCTG < 41bp 1 0.43927887739129 1 0.224176794290543 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100485923 chr7:100485931 nonsynonymous SNV 0.108 1 29 hm5C_associated_SNPs_23048 0 0 1 0 2 SRRT chr7:100486004 5'GT 100486004 Upstream 74bp
chr13 113719256 113719256 1 + G A GBM 113719251 + 113719231 113719271 41 TGTTTTCTCTGTCCCCAAGGCCATCGAAAGTTTCGCCCTCA TGTTTTCTCTGTCCCCAAGGCCATCAAAAGTTTCGCCCTCA < 41bp 1 0.0142743602225276 1 0.111308038234711 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113719251 chr13:113719256 nonsynonymous SNV 0.054 4 26 hm5C_associated_SNPs_23049 0 0 1 0 1 MCF2L chr13:113719250 3'AG 113719250 Downstream 7bp
chr1 163306614 163306614 1 + G A GBM 163306605 + 163306585 163306625 41 ATTCACTTCAGAGAAGCATGCCGTGAAACGTATATGGAATT ATTCACTTCAGAGAAGCATGCCGTGAAACATATATGGAATT < 41bp 1 0.158223079091634 1 0.330177307128906 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUF2 ENSG00000143228 CDS Human protein_coding chr1:163306605 chr1:163306614 synonymous SNV . 0 30 hm5C_associated_SNPs_23050 0 0 1 0 2 NUF2 chr1:163306541 3'AG 163306541 Downstream 74bp
chr1 163306614 163306614 1 + G A GBM 163306605 + 163306585 163306625 41 ATTCACTTCAGAGAAGCATGCCGTGAAACGTATATGGAATT ATTCACTTCAGAGAAGCATGCCGTGAAACATATATGGAATT < 41bp 1 0.158223079091634 1 0.330177307128906 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUF2 ENSG00000143228 CDS Human protein_coding chr1:163306605 chr1:163306614 synonymous SNV . 0 30 hm5C_associated_SNPs_23050 0 0 1 0 2 NUF2 chr1:163306638 5'GT 163306638 Upstream 25bp
chr17 48757178 48757178 1 + G A GBM 48757176 + 48757156 48757196 41 CAGGTGACATTTGCTCTGAACTGGATGATACGAATGATGTC CAGGTGACATTTGCTCTGAACTAGATGATACGAATGATGTC < 41bp 1 0.452665692960203 1 0.434590816497803 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48757176 chr17:48757178 stopgain 0.996 1 23 hm5C_associated_SNPs_23051 0 0 0 0 2 ABCC3 chr17:48757159 3'AG 48757159 Downstream 20bp
chr17 48757178 48757178 1 + G A GBM 48757176 + 48757156 48757196 41 CAGGTGACATTTGCTCTGAACTGGATGATACGAATGATGTC CAGGTGACATTTGCTCTGAACTAGATGATACGAATGATGTC < 41bp 1 0.452665692960203 1 0.434590816497803 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48757176 chr17:48757178 stopgain 0.996 1 23 hm5C_associated_SNPs_23051 0 0 0 0 2 ABCC3 chr17:48757260 5'GT 48757260 Upstream 83bp
chr21 44450011 44450011 1 + A G GBM 44450012 + 44449992 44450032 41 TGCCGCAGGAGCTGTTGTCACCATCACCACGCCCGTGAACA TGCCGCAGGAGCTGTTGTCGCCATCACCACGCCCGTGAACA < 41bp 1 0.0584524910588618 1 0.197430402040482 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PKNOX1 ENSG00000160199 CDS Human protein_coding chr21:44450012 chr21:44450011 nonsynonymous SNV 0.748 1 20 hm5C_associated_SNPs_23052 0 0 0 0 1 PKNOX1 chr21:44450000 3'AG 44450000 Downstream 12bp
chr10 128830507 128830507 1 + G A GBM 128830517 + 128830497 128830537 41 AGCATGCAGAGCCTTGGGAGCTGCACCATTAGCAAGGACTC AGCATGCAGAACCTTGGGAGCTGCACCATTAGCAAGGACTC < 41bp 1 0.428154111610895 1 0.252163708209991 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:128830517 chr10:128830507 nonsynonymous SNV 0.989 1 11 hm5C_associated_SNPs_23053 0 0 1 0 1 DOCK1 chr10:128830584 5'GT 128830584 Upstream 78bp
chr12 51108366 51108366 1 + G A GBM 51108355 + 51108335 51108375 41 ATACATGTGTGACAAACTTGCCAAAGCCCCGGCAAAAACAA ATACATGTGTGACAAACTTGCCAAAGCCCCGACAAAAACAA < 41bp 1 0.195243243156256 1 0.237670332193375 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51108355 chr12:51108366 synonymous SNV . 0 32 hm5C_associated_SNPs_23054 0 0 0 0 1 DIP2B chr12:51108379 5'GT 51108379 Upstream 14bp
chrX 153627886 153627886 1 + G A GBM 153627896 + 153627876 153627916 41 ATGAGTTTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT ATGAGTTTCCACTTTGTGGCCACATGGTGTCAGATGAATAT < 41bp 1 0.24286856285992 1 0.495407044887543 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627896 chrX:153627886 synonymous SNV . 0 11 hm5C_associated_SNPs_23056 0 0 1 0 2 RPL10 chrX:153627828 3'AG 153627828 Downstream 59bp
chrX 153627886 153627886 1 + G A GBM 153627896 + 153627876 153627916 41 ATGAGTTTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT ATGAGTTTCCACTTTGTGGCCACATGGTGTCAGATGAATAT < 41bp 1 0.24286856285992 1 0.495407044887543 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627896 chrX:153627886 synonymous SNV . 0 11 hm5C_associated_SNPs_23056 0 0 1 0 2 RPL10 chrX:153627935 5'GT 153627935 Upstream 50bp
chr19 6151731 6151731 1 + G A GBM 6151718 + 6151698 6151738 41 GTTTGCTTTTTCCTTCCCAGCTGGGTTTGGAGCGTTTCCAC GTTTGCTTTTTCCTTCCCAGCTGGGTTTGGAGCATTTCCAC < 41bp 1 0.752226853060354 1 0.534548282623291 experiment 0.495546293879292 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ACSBG2 ENSG00000130377 CDS Human protein_coding chr19:6151718 chr19:6151731 nonsynonymous SNV 0.997 0 34 hm5C_associated_SNPs_23057 0 0 0 0 2 ACSBG2 chr19:6151718 3'AG 6151718 Downstream 14bp
chr19 6151731 6151731 1 + G A GBM 6151718 + 6151698 6151738 41 GTTTGCTTTTTCCTTCCCAGCTGGGTTTGGAGCGTTTCCAC GTTTGCTTTTTCCTTCCCAGCTGGGTTTGGAGCATTTCCAC < 41bp 1 0.752226853060354 1 0.534548282623291 experiment 0.495546293879292 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ACSBG2 ENSG00000130377 CDS Human protein_coding chr19:6151718 chr19:6151731 nonsynonymous SNV 0.997 0 34 hm5C_associated_SNPs_23057 0 0 0 0 2 ACSBG2 chr19:6151806 5'GT 6151806 Upstream 76bp
chr12 105519878 105519878 1 + A G GBM 105519876 + 105519856 105519896 41 ATTTGCACATAGTATTCGGTCAATTTTTGCAAATGTAGAAG ATTTGCACATAGTATTCGGTCAGTTTTTGCAAATGTAGAAG < 41bp 1 0.243234021675019 1 0.0981546342372894 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519876 chr12:105519878 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_23058 0 0 1 0 2 WASHC4 chr12:105519782 3'AG 105519782 Downstream 97bp
chr12 105519878 105519878 1 + A G GBM 105519876 + 105519856 105519896 41 ATTTGCACATAGTATTCGGTCAATTTTTGCAAATGTAGAAG ATTTGCACATAGTATTCGGTCAGTTTTTGCAAATGTAGAAG < 41bp 1 0.243234021675019 1 0.0981546342372894 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519876 chr12:105519878 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_23058 0 0 1 0 2 WASHC4 chr12:105519905 5'GT 105519905 Upstream 28bp
chr12 105519878 105519878 1 + A G GBM 105519885 + 105519865 105519905 41 TAGTATTCGGTCAATTTTTGCAAATGTAGAAGCCAAACTTG TAGTATTCGGTCAGTTTTTGCAAATGTAGAAGCCAAACTTG < 41bp 1 0.378215958084302 1 0.303459465503693 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519885 chr12:105519878 nonsynonymous SNV 0.999 0 14 hm5C_associated_SNPs_23059 0 0 1 0 2 WASHC4 chr12:105519782 3'AG 105519782 Downstream 97bp
chr12 105519878 105519878 1 + A G GBM 105519885 + 105519865 105519905 41 TAGTATTCGGTCAATTTTTGCAAATGTAGAAGCCAAACTTG TAGTATTCGGTCAGTTTTTGCAAATGTAGAAGCCAAACTTG < 41bp 1 0.378215958084302 1 0.303459465503693 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519885 chr12:105519878 nonsynonymous SNV 0.999 0 14 hm5C_associated_SNPs_23059 0 0 1 0 2 WASHC4 chr12:105519905 5'GT 105519905 Upstream 28bp
chr12 105519878 105519878 1 + A G GBM 105519898 + 105519878 105519918 41 ATTTTTGCAAATGTAGAAGCCAAACTTGGTAATGTAAATCG GTTTTTGCAAATGTAGAAGCCAAACTTGGTAATGTAAATCG < 41bp 1 0.211086921933359 1 0.101297736167908 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519898 chr12:105519878 nonsynonymous SNV 0.999 0 1 hm5C_associated_SNPs_23060 0 0 1 0 2 WASHC4 chr12:105519782 3'AG 105519782 Downstream 97bp
chr12 105519878 105519878 1 + A G GBM 105519898 + 105519878 105519918 41 ATTTTTGCAAATGTAGAAGCCAAACTTGGTAATGTAAATCG GTTTTTGCAAATGTAGAAGCCAAACTTGGTAATGTAAATCG < 41bp 1 0.211086921933359 1 0.101297736167908 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519898 chr12:105519878 nonsynonymous SNV 0.999 0 1 hm5C_associated_SNPs_23060 0 0 1 0 2 WASHC4 chr12:105519905 5'GT 105519905 Upstream 28bp
chr3 47041686 47041686 1 + G T GBM 47041673 + 47041653 47041693 41 CCTTTGACCTGGGCCTGGAACGGTCTAGTGTAGGATCAGGC CCTTTGACCTGGGCCTGGAACGGTCTAGTGTAGTATCAGGC < 41bp 1 0.111181853920511 1 0.709576010704041 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041673 chr3:47041686 nonsynonymous SNV 0.132 1 34 hm5C_associated_SNPs_23061 0 0 1 0 1 NBEAL2 chr3:47041686 3'AG 47041686 Downstream 1bp
chr2 46609718 46609718 1 + G A GBM 46609709 + 46609689 46609729 41 GCCACCCAGTACCAGGACTACAGCCTGTCGTCAGCCCACAA GCCACCCAGTACCAGGACTACAGCCTGTCATCAGCCCACAA < 41bp 1 0.378074185483464 1 0.108287572860718 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46609709 chr2:46609718 synonymous SNV . 0 30 hm5C_associated_SNPs_23062 0 0 1 0 1 EPAS1 chr2:46609737 5'GT 46609737 Upstream 20bp
chr15 22969226 22969226 1 + C T GBM 22969231 + 22969211 22969251 41 AGCCGGTACCTGACGCTGGACGGCTTCGACGCCATGTTCCG AGCCGGTACCTGACGTTGGACGGCTTCGACGCCATGTTCCG < 41bp 1 0.511155775865704 1 0.261859208345413 experiment 0.977688448268591 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22969231 chr15:22969226 synonymous SNV . 0 16 hm5C_associated_SNPs_23065 0 0 1 0 1 CYFIP1 chr15:22969163 3'AG 22969163 Downstream 64bp
chr5 6651998 6651998 1 + C T GBM 6652008 + 6651988 6652028 41 AAAGCCTATGCCACTGTTGGCGTGTACAATGGCGATTATGT AAAGCCTATGTCACTGTTGGCGTGTACAATGGCGATTATGT < 41bp 1 0.135604641096871 1 0.128128081560135 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6652008 chr5:6651998 nonsynonymous SNV 0.002 2 11 hm5C_associated_SNPs_23066 0 0 1 0 1 SRD5A1 chr5:6651955 3'AG 6651955 Downstream 44bp
chr11 73074847 73074847 1 + C T GBM 73074840 + 73074820 73074860 41 ATCCGTGACCGCAGGAACAGCATGAAGCTCCAGCATGCGGC ATCCGTGACCGCAGGAACAGCATGAAGTTCCAGCATGCGGC < 41bp 1 0.38864884191212 1 0.163143575191498 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73074840 chr11:73074847 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_23067 0 0 1 0 1 ARHGEF17 chr11:73074878 5'GT 73074878 Upstream 32bp
chr3 58067448 58067448 1 + G C GBM 58067455 + 58067435 58067475 41 CCAAGCTCAAGCCGGGGGCTCCTCTCAAACCCAAACTCAAC CCAAGCTCAAGCCCGGGGCTCCTCTCAAACCCAAACTCAAC < 41bp 1 0.014456608218596 1 0.0318981111049652 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58067455 chr3:58067448 synonymous SNV . 0 14 hm5C_associated_SNPs_23068 0 0 1 0 2 FLNB chr3:58067356 3'AG 58067356 Downstream 93bp
chr3 58067448 58067448 1 + G C GBM 58067455 + 58067435 58067475 41 CCAAGCTCAAGCCGGGGGCTCCTCTCAAACCCAAACTCAAC CCAAGCTCAAGCCCGGGGCTCCTCTCAAACCCAAACTCAAC < 41bp 1 0.014456608218596 1 0.0318981111049652 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58067455 chr3:58067448 synonymous SNV . 0 14 hm5C_associated_SNPs_23068 0 0 1 0 2 FLNB chr3:58067503 5'GT 58067503 Upstream 56bp
chr3 58067448 58067448 1 + G C GBM 58067456 + 58067436 58067476 41 CAAGCTCAAGCCGGGGGCTCCTCTCAAACCCAAACTCAACC CAAGCTCAAGCCCGGGGCTCCTCTCAAACCCAAACTCAACC < 41bp 1 0.0419385297045123 1 0.200260102748871 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58067456 chr3:58067448 synonymous SNV . 0 13 hm5C_associated_SNPs_23069 0 0 1 0 2 FLNB chr3:58067356 3'AG 58067356 Downstream 93bp
chr3 58067448 58067448 1 + G C GBM 58067456 + 58067436 58067476 41 CAAGCTCAAGCCGGGGGCTCCTCTCAAACCCAAACTCAACC CAAGCTCAAGCCCGGGGCTCCTCTCAAACCCAAACTCAACC < 41bp 1 0.0419385297045123 1 0.200260102748871 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58067456 chr3:58067448 synonymous SNV . 0 13 hm5C_associated_SNPs_23069 0 0 1 0 2 FLNB chr3:58067503 5'GT 58067503 Upstream 56bp
chr11 61898029 61898029 1 + G A GBM 61898018 + 61897998 61898038 41 CAGGGCGAGCAGAAGGCTTGCCAAGAAGACTGCCGAAGAGC CAGGGCGAGCAGAAGGCTTGCCAAGAAGACTACCGAAGAGC < 41bp 1 0.161405415145976 1 0.156053632497787 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61898018 chr11:61898029 nonsynonymous SNV 0.144 0 32 hm5C_associated_SNPs_23070 0 0 1 0 1 INCENP chr11:61898062 5'GT 61898062 Upstream 34bp
chr1 145518168 145518168 1 + C T GBM 145518156 + 145518136 145518176 41 GTTGTCCTGAGATTCTGCATCACTGTTAGTCACCTCAATCG GTTGTCCTGAGATTCTGCATCACTGTTAGTCATCTCAATCG < 41bp 1 0.225496552260232 1 0.0369031727313995 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PEX11B ENSG00000131779 CDS Human protein_coding chr1:145518156 chr1:145518168 synonymous SNV . 0 33 hm5C_associated_SNPs_23071 0 0 1 0 1 PEX11B chr1:145518071 3'AG 145518071 Downstream 98bp
chr6 26091740 26091740 1 + G T GBM 26091728 + 26091708 26091748 41 GGAAAGGCACAAGATTCGGGCCAGGCAGAACAGGGCCTACC GGAAAGGCACAAGATTCGGGCCAGGCAGAACATGGCCTACC < 41bp 1 0.335050922938622 1 0.288356721401215 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26091728 chr6:26091740 nonsynonymous SNV 0.974 3 33 hm5C_associated_SNPs_23072 0 0 0 0 1 HFE chr6:26091817 5'GT 26091817 Upstream 78bp
chr6 26091740 26091740 1 + G T GBM 26091729 + 26091709 26091749 41 GAAAGGCACAAGATTCGGGCCAGGCAGAACAGGGCCTACCT GAAAGGCACAAGATTCGGGCCAGGCAGAACATGGCCTACCT < 41bp 1 0.445527251536599 1 0.382254153490067 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26091729 chr6:26091740 nonsynonymous SNV 0.974 3 32 hm5C_associated_SNPs_23073 0 0 0 0 1 HFE chr6:26091817 5'GT 26091817 Upstream 78bp
chr10 73039785 73039785 1 + G T GBM 73039798 + 73039778 73039818 41 CAGGAAGGCCTGGATGAGGCCACCGGTGAGCCCGCCCCACT CAGGAAGTCCTGGATGAGGCCACCGGTGAGCCCGCCCCACT < 41bp 1 0.673073516122581 1 0.585698306560516 experiment 0.653852967754837 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UNC5B ENSG00000107731 CDS Human protein_coding chr10:73039798 chr10:73039785 nonsynonymous SNV 0.997 1 8 hm5C_associated_SNPs_23074 0 0 1 0 1 UNC5B chr10:73039802 5'GT 73039802 Upstream 18bp
chr1 155288033 155288033 1 + A G GBM 155288044 + 155288024 155288064 41 TGAAGCTCTATTGCCGGGAGCAGCCCTATTACCTGAACCTG TGAAGCTCTGTTGCCGGGAGCAGCCCTATTACCTGAACCTG < 41bp 1 0.324547354708735 1 0.345382511615753 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155288044 chr1:155288033 nonsynonymous SNV 0.997 1 10 hm5C_associated_SNPs_23076 0 0 1 0 2 FDPS chr1:155287960 3'AG 155287960 Downstream 74bp
chr1 155288033 155288033 1 + A G GBM 155288044 + 155288024 155288064 41 TGAAGCTCTATTGCCGGGAGCAGCCCTATTACCTGAACCTG TGAAGCTCTGTTGCCGGGAGCAGCCCTATTACCTGAACCTG < 41bp 1 0.324547354708735 1 0.345382511615753 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155288044 chr1:155288033 nonsynonymous SNV 0.997 1 10 hm5C_associated_SNPs_23076 0 0 1 0 2 FDPS chr1:155288082 5'GT 155288082 Upstream 50bp
chr22 29695792 29695792 1 + C A GBM 29695781 + 29695761 29695801 41 CCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG CCCTGGGGGGCCCCCTGGACCTTTGATGGAAAAGATGGGAG < 41bp 1 0.434522213551693 1 0.170402020215988 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695781 chr22:29695792 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_23077 0 0 1 0 1 EWSR1 chr22:29695841 5'GT 29695841 Upstream 50bp
chr1 231700308 231700308 1 + C T GBM 231700298 + 231700278 231700318 41 CCTCTGATGCACAGGATAAGCAGTTTGGTACTTGGAGACTG CCTCTGATGCACAGGATAAGCAGTTTGGTATTTGGAGACTG < 41bp 1 0.448663234834167 1 0.0553272366523743 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TSNAX ENSG00000116918 CDS Human protein_coding chr1:231700298 chr1:231700308 nonsynonymous SNV 0.810 2 31 hm5C_associated_SNPs_23078 0 0 1 0 1 TSNAX chr1:231700274 3'AG 231700274 Downstream 35bp
chr9 131196696 131196696 1 + G A GBM 131196705 + 131196685 131196725 41 ACAGCTACCTCGGACGGAAGCAGGTGAACCCTGAGAAGGAG ACAGCTACCTCAGACGGAAGCAGGTGAACCCTGAGAAGGAG < 41bp 1 0.542911536107551 1 0.853305578231812 experiment 0.914176927784898 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131196705 chr9:131196696 nonsynonymous SNV 0.900 4 12 hm5C_associated_SNPs_23080 0 0 1 0 1 CERCAM chr9:131196689 3'AG 131196689 Downstream 8bp
chr11 43413469 43413469 1 + C A GBM 43413476 + 43413456 43413496 41 GGAGTATAGATGACATAGGTCACCTCATTCATGAAGGCCTA GGAGTATAGATGAAATAGGTCACCTCATTCATGAAGGCCTA < 41bp 1 0.306295433099138 1 0.0431027114391327 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TTC17 ENSG00000052841 CDS Human protein_coding chr11:43413476 chr11:43413469 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_23084 0 0 1 0 1 TTC17 chr11:43413502 5'GT 43413502 Upstream 34bp
chr20 2843940 2843940 1 + G A GBM 2843957 + 2843937 2843977 41 CTCGTGTTGCGGAGACTTTACCCCCTGGCCATCCAGATATG CTCATGTTGCGGAGACTTTACCCCCTGGCCATCCAGATATG < 41bp 1 0.259758523814754 1 0.0860644578933716 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2843957 chr20:2843940 nonsynonymous SNV 0.999 4 4 hm5C_associated_SNPs_23085 0 0 0 1 1 VPS16 chr20:2843936 3'AG 2843936 Downstream 5bp
chr16 27760994 27760994 1 + G T GBM 27761012 + 27760992 27761032 41 GTGCCTTCGACCGCTCCCACCGGGGACGCATCTCCAACACG GTTCCTTCGACCGCTCCCACCGGGGACGCATCTCCAACACG < 41bp 1 0.581662235112718 1 0.92294454574585 experiment 0.836675529774564 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27761012 chr16:27760994 nonsynonymous SNV 0.990 0 3 hm5C_associated_SNPs_23086 0 0 0 0 1 KIAA0556 chr16:27760905 3'AG 27760905 Downstream 90bp
chr5 17275370 17275370 1 + C T GBM 17275381 + 17275361 17275401 41 CAATGTGAACGACGAGAAAGCCAAGGAGAAAGACAAGAAGG CAATGTGAATGACGAGAAAGCCAAGGAGAAAGACAAGAAGG < 41bp 1 0.391049605783987 1 0.516731858253479 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275381 chr5:17275370 synonymous SNV . 0 10 hm5C_associated_SNPs_23087 0 0 1 0 1 BASP1 chr5:17275317 3'AG 17275317 Downstream 54bp
chr22 32234828 32234828 1 + C T GBM 32234816 + 32234796 32234836 41 CGCCCCCGCTGAGCAGTAGCCCACTCTATAGCCGAGGTGAG CGCCCCCGCTGAGCAGTAGCCCACTCTATAGCTGAGGTGAG < 41bp 1 0.143490832395689 1 0.0738464891910553 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32234816 chr22:32234828 stopgain 0.998 1 33 hm5C_associated_SNPs_23088 0 0 0 0 1 DEPDC5 chr22:32234831 5'GT 32234831 Upstream 4bp
chr11 120352059 120352059 1 + C T GBM 120352068 + 120352048 120352088 41 GCAGCCCATGACAGGCATCCCTGCTGTGGAATCCACCCACC GCAGCCCATGATAGGCATCCCTGCTGTGGAATCCACCCACC < 41bp 1 0.578144568828821 1 0.0980882048606873 experiment 0.843710862342357 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120352068 chr11:120352059 nonsynonymous SNV 0.005 1 12 hm5C_associated_SNPs_23089 0 0 1 0 1 ARHGEF12 chr11:120351969 3'AG 120351969 Downstream 91bp
chr14 105936268 105936268 1 + C T GBM 105936253 + 105936233 105936273 41 TGATCCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGCGGCGG TGATCCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGTGGCGG < 41bp 1 0.199267342759794 1 0.0962875485420227 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936253 chr14:105936268 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_23090 0 0 1 0 2 MTA1 chr14:105936178 3'AG 105936178 Downstream 91bp
chr14 105936268 105936268 1 + C T GBM 105936253 + 105936233 105936273 41 TGATCCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGCGGCGG TGATCCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGTGGCGG < 41bp 1 0.199267342759794 1 0.0962875485420227 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936253 chr14:105936268 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_23090 0 0 1 0 2 MTA1 chr14:105936329 5'GT 105936329 Upstream 62bp
chr14 105936268 105936268 1 + C T GBM 105936255 + 105936235 105936275 41 ATCCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGCGGCGGAT ATCCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGTGGCGGAT < 41bp 1 0.53072075464455 1 0.257138133049011 experiment 0.9385584907109 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936255 chr14:105936268 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_23091 0 0 1 0 2 MTA1 chr14:105936178 3'AG 105936178 Downstream 91bp
chr14 105936268 105936268 1 + C T GBM 105936255 + 105936235 105936275 41 ATCCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGCGGCGGAT ATCCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGTGGCGGAT < 41bp 1 0.53072075464455 1 0.257138133049011 experiment 0.9385584907109 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936255 chr14:105936268 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_23091 0 0 1 0 2 MTA1 chr14:105936329 5'GT 105936329 Upstream 62bp
chr14 105936268 105936268 1 + C T GBM 105936265 + 105936245 105936285 41 GCTCCCTGCCCCCAGTCAAGCGGCGGCGGATGAACTGGATC GCTCCCTGCCCCCAGTCAAGCGGTGGCGGATGAACTGGATC < 41bp 1 0.61098622742138 1 0.686614811420441 experiment 0.77802754515724 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936265 chr14:105936268 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_23092 0 0 1 0 2 MTA1 chr14:105936178 3'AG 105936178 Downstream 91bp
chr14 105936268 105936268 1 + C T GBM 105936265 + 105936245 105936285 41 GCTCCCTGCCCCCAGTCAAGCGGCGGCGGATGAACTGGATC GCTCCCTGCCCCCAGTCAAGCGGTGGCGGATGAACTGGATC < 41bp 1 0.61098622742138 1 0.686614811420441 experiment 0.77802754515724 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936265 chr14:105936268 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_23092 0 0 1 0 2 MTA1 chr14:105936329 5'GT 105936329 Upstream 62bp
chr14 105936268 105936268 1 + C T GBM 105936285 + 105936265 105936305 41 CGGCGGCGGATGAACTGGATCGACGCCCCGGATGACGTGTT CGGTGGCGGATGAACTGGATCGACGCCCCGGATGACGTGTT < 41bp 1 0.543264432705592 1 0.50993424654007 experiment 0.913471134588815 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936285 chr14:105936268 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_23093 0 0 1 0 2 MTA1 chr14:105936178 3'AG 105936178 Downstream 91bp
chr14 105936268 105936268 1 + C T GBM 105936285 + 105936265 105936305 41 CGGCGGCGGATGAACTGGATCGACGCCCCGGATGACGTGTT CGGTGGCGGATGAACTGGATCGACGCCCCGGATGACGTGTT < 41bp 1 0.543264432705592 1 0.50993424654007 experiment 0.913471134588815 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936285 chr14:105936268 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_23093 0 0 1 0 2 MTA1 chr14:105936329 5'GT 105936329 Upstream 62bp
chr12 58109576 58109576 1 + G A GBM 58109596 + 58109576 58109616 41 GACTACATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTA AACTACATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTA < 41bp 1 0.431616085370223 1 0.625046014785767 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OS9 ENSG00000135506 CDS Human protein_coding chr12:58109596 chr12:58109576 nonsynonymous SNV 0.998 3 1 hm5C_associated_SNPs_23094 0 0 1 0 1 OS9 chr12:58109543 3'AG 58109543 Downstream 34bp
chr19 17626983 17626983 1 + C T GBM 17626993 + 17626973 17627013 41 TGGCTGCAGACGCATCTTCTCTCCAGACTGCCGATCCCAGA TGGCTGCAGATGCATCTTCTCTCCAGACTGCCGATCCCAGA < 41bp 1 0.794492735900441 1 0.915041446685791 experiment 0.411014528199117 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PGLS ENSG00000130313 CDS Human protein_coding chr19:17626993 chr19:17626983 nonsynonymous SNV 0.243 2 11 hm5C_associated_SNPs_23095 0 0 1 0 1 PGLS chr19:17626982 3'AG 17626982 Downstream 2bp
chr7 134215407 134215407 1 + A G GBM 134215396 + 134215376 134215416 41 CTTTTCTTTTGCCTTTCAGTCTCCTCTTGGCAAAGTGAAAG CTTTTCTTTTGCCTTTCAGTCTCCTCTTGGCGAAGTGAAAG < 41bp 1 0.269998597673646 1 0.372850239276886 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134215396 chr7:134215407 nonsynonymous SNV 0.102 0 32 hm5C_associated_SNPs_23096 0 0 1 0 1 AKR1B10 chr7:134215395 3'AG 134215395 Downstream 13bp
chr2 27456321 27456321 1 + G A GBM 27456304 + 27456284 27456324 41 CCGGGTGCTGGGCACCTCCCCTGAAGCCATTGACTCGGCTG CCGGGTGCTGGGCACCTCCCCTGAAGCCATTGACTCGACTG < 41bp 1 0.671352117262179 1 0.320110350847244 experiment 0.657295765475642 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27456304 chr2:27456321 nonsynonymous SNV 0.910 5 38 hm5C_associated_SNPs_23097 0 0 1 0 1 CAD chr2:27456404 5'GT 27456404 Upstream 84bp
chr11 14666553 14666553 1 + G A GBM 14666571 + 14666551 14666591 41 TTGCAAAATATTCAGGAGACCGTCGTTGCCTTGTATTTCCA TTACAAAATATTCAGGAGACCGTCGTTGCCTTGTATTTCCA < 41bp 1 0.187843321831872 1 0.0992560684680939 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE3B ENSG00000152270 CDS Human protein_coding chr11:14666571 chr11:14666553 nonsynonymous SNV 0.886 0 3 hm5C_associated_SNPs_23098 0 0 1 0 1 PDE3B chr11:14666599 5'GT 14666599 Upstream 47bp
chr2 233684613 233684613 1 + A G GBM 233684612 + 233684592 233684632 41 AAGAGGAAGAAAGACAGCAGCAAGAAGAAGCTCTTAGAAGA AAGAGGAAGAAAGACAGCAGCGAGAAGAAGCTCTTAGAAGA < 41bp 1 0.691938426846069 1 0.706699073314667 experiment 0.616123146307863 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233684612 chr2:233684613 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_23099 0 0 1 0 1 GIGYF2 chr2:233684537 3'AG 233684537 Downstream 77bp
chr2 233684613 233684613 1 + A G GBM 233684622 + 233684602 233684642 41 AAGACAGCAGCAAGAAGAAGCTCTTAGAAGACTGGAAGAGA AAGACAGCAGCGAGAAGAAGCTCTTAGAAGACTGGAAGAGA < 41bp 1 0.149111450814432 1 0.191605299711227 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233684622 chr2:233684613 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_23100 0 0 1 0 1 GIGYF2 chr2:233684537 3'AG 233684537 Downstream 77bp
chr2 128867298 128867298 1 + C A GBM 128867287 + 128867267 128867307 41 GAAGACTTGTGAATCTGATACCCTTGAGGCTCTTCTACTGA GAAGACTTGTGAATCTGATACCCTTGAGGCTATTCTACTGA < 41bp 1 0.0422321637607687 1 0.0741803050041199 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128867287 chr2:128867298 nonsynonymous SNV 0.186 1 32 hm5C_associated_SNPs_23102 0 0 1 0 2 UGGT1 chr2:128867208 3'AG 128867208 Downstream 91bp
chr2 128867298 128867298 1 + C A GBM 128867287 + 128867267 128867307 41 GAAGACTTGTGAATCTGATACCCTTGAGGCTCTTCTACTGA GAAGACTTGTGAATCTGATACCCTTGAGGCTATTCTACTGA < 41bp 1 0.0422321637607687 1 0.0741803050041199 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128867287 chr2:128867298 nonsynonymous SNV 0.186 1 32 hm5C_associated_SNPs_23102 0 0 1 0 2 UGGT1 chr2:128867320 5'GT 128867320 Upstream 23bp
chr7 129394920 129394920 1 + G A GBM 129394901 + 129394881 129394921 41 ATGTACCAGACTGTGGTGACCAGCCTCGCCCAGGGCAACGG ATGTACCAGACTGTGGTGACCAGCCTCGCCCAGGGCAACAG < 41bp 1 0.621882559402356 1 0.187761157751083 experiment 0.756234881195287 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NRF1 ENSG00000106459 CDS Human protein_coding chr7:129394901 chr7:129394920 nonsynonymous SNV 0.998 1 40 hm5C_associated_SNPs_23103 0 0 1 0 1 NRF1 chr7:129394858 3'AG 129394858 Downstream 63bp
chr16 68331157 68331157 1 + C T GBM 68331160 + 68331140 68331180 41 CTATCACCAGAGGCACCCAGCAGCTTTGCTTTTGTGTCCTG CTATCACCAGAGGCACCTAGCAGCTTTGCTTTTGTGTCCTG < 41bp 1 0.545887575274411 1 0.562118113040924 experiment 0.908224849451179 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC7A6 ENSG00000103064 CDS Human protein_coding chr16:68331160 chr16:68331157 stopgain 0.995 1 18 hm5C_associated_SNPs_23104 0 0 1 0 1 SLC7A6 chr16:68331137 3'AG 68331137 Downstream 21bp
chr16 731823 731823 1 + G T GBM 731817 + 731797 731837 41 CTGGAAGAGTGCCAGCGAAACCACGAGGGTGATGAGGACGA CTGGAAGAGTGCCAGCGAAACCACGATGGTGATGAGGACGA < 41bp 1 0.414474301866063 1 0.148663848638535 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STUB1 ENSG00000103266 CDS Human protein_coding chr16:731817 chr16:731823 nonsynonymous SNV 0.997 0 27 hm5C_associated_SNPs_23105 0 0 1 0 2 STUB1 chr16:731793 3'AG 731793 Downstream 31bp
chr16 731823 731823 1 + G T GBM 731817 + 731797 731837 41 CTGGAAGAGTGCCAGCGAAACCACGAGGGTGATGAGGACGA CTGGAAGAGTGCCAGCGAAACCACGATGGTGATGAGGACGA < 41bp 1 0.414474301866063 1 0.148663848638535 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STUB1 ENSG00000103266 CDS Human protein_coding chr16:731817 chr16:731823 nonsynonymous SNV 0.997 0 27 hm5C_associated_SNPs_23105 0 0 1 0 2 STUB1 chr16:731880 5'GT 731880 Upstream 58bp
chrX 77378404 77378404 1 + T A GBM 77378418 + 77378398 77378438 41 TGGTGGTGGAATGGCTTTTACCTTCCTTAAGGTGCTCAACA TGGTGGAGGAATGGCTTTTACCTTCCTTAAGGTGCTCAACA < 41bp 1 0.0488952602715474 1 0.26745742559433 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378418 chrX:77378404 synonymous SNV . 0 7 hm5C_associated_SNPs_23106 0 0 1 0 2 PGK1 chrX:77378332 3'AG 77378332 Downstream 73bp
chrX 77378404 77378404 1 + T A GBM 77378418 + 77378398 77378438 41 TGGTGGTGGAATGGCTTTTACCTTCCTTAAGGTGCTCAACA TGGTGGAGGAATGGCTTTTACCTTCCTTAAGGTGCTCAACA < 41bp 1 0.0488952602715474 1 0.26745742559433 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378418 chrX:77378404 synonymous SNV . 0 7 hm5C_associated_SNPs_23106 0 0 1 0 2 PGK1 chrX:77378446 5'GT 77378446 Upstream 43bp
chr5 147585617 147585617 1 + G A GBM 147585619 + 147585599 147585639 41 GTGTCTTCAGTCAGGGAGGACAGGTCAGTGCCTATTTTTAT GTGTCTTCAGTCAGGGAGAACAGGTCAGTGCCTATTTTTAT < 41bp 1 0.652032979539774 1 0.563299536705017 experiment 0.695934040920452 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPINK6 ENSG00000178172 CDS Human protein_coding chr5:147585619 chr5:147585617 nonsynonymous SNV 0.701 0 19 hm5C_associated_SNPs_23110 0 0 0 0 2 SPINK6 chr5:147585599 3'AG 147585599 Downstream 19bp
chr5 147585617 147585617 1 + G A GBM 147585619 + 147585599 147585639 41 GTGTCTTCAGTCAGGGAGGACAGGTCAGTGCCTATTTTTAT GTGTCTTCAGTCAGGGAGAACAGGTCAGTGCCTATTTTTAT < 41bp 1 0.652032979539774 1 0.563299536705017 experiment 0.695934040920452 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPINK6 ENSG00000178172 CDS Human protein_coding chr5:147585619 chr5:147585617 nonsynonymous SNV 0.701 0 19 hm5C_associated_SNPs_23110 0 0 0 0 2 SPINK6 chr5:147585621 5'GT 147585621 Upstream 5bp
chr1 179310423 179310423 1 + G T GBM 179310411 + 179310391 179310431 41 TGTGTTAGCATATACACTGCCACCAGCTTCCCGGTTCATCA TGTGTTAGCATATACACTGCCACCAGCTTCCCTGTTCATCA < 41bp 1 0.732040460694884 1 0.144783794879913 experiment 0.535919078610233 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SOAT1 ENSG00000057252 CDS Human protein_coding chr1:179310411 chr1:179310423 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_23111 0 0 1 0 1 SOAT1 chr1:179310445 5'GT 179310445 Upstream 23bp
chr11 126143239 126143239 1 + G A GBM 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTAGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA < 41bp 1 0.489521203365099 1 0.1925890147686 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143239 synonymous SNV . 0 4 hm5C_associated_SNPs_23112 0 0 1 0 2 FOXRED1 chr11:126143211 3'AG 126143211 Downstream 29bp
chr11 126143239 126143239 1 + G A GBM 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTAGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA < 41bp 1 0.489521203365099 1 0.1925890147686 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143239 synonymous SNV . 0 4 hm5C_associated_SNPs_23112 0 0 1 0 2 FOXRED1 chr11:126143231 3'AG 126143231 Downstream 9bp
chr7 142460295 142460295 1 + C T GBM 142460282 + 142460262 142460302 41 TCTCTTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGC TCTCTTCCTGATCCTCACAGCCGACTACCCAGATGAGCTGC < 41bp 1 0.103839293429668 1 0.227426111698151 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460282 chr7:142460295 synonymous SNV . 0 34 hm5C_associated_SNPs_23113 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 14bp
chr7 142460295 142460295 1 + C T GBM 142460283 + 142460263 142460303 41 CTCTTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGCA CTCTTCCTGATCCTCACAGCCGACTACCCAGATGAGCTGCA < 41bp 1 0.177989038934271 1 0.407208353281021 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460283 chr7:142460295 synonymous SNV . 0 33 hm5C_associated_SNPs_23114 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 14bp
chr7 142460295 142460295 1 + C T GBM 142460286 + 142460266 142460306 41 TTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTG TTCCTGATCCTCACAGCCGACTACCCAGATGAGCTGCAGTG < 41bp 1 0.0969338274941445 1 0.124966204166412 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460286 chr7:142460295 synonymous SNV . 0 30 hm5C_associated_SNPs_23115 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 14bp
chr7 142460295 142460295 1 + C T GBM 142460289 + 142460269 142460309 41 CTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCT CTGATCCTCACAGCCGACTACCCAGATGAGCTGCAGTGCCT < 41bp 1 0.171449709205806 1 0.408946007490158 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460289 chr7:142460295 synonymous SNV . 0 27 hm5C_associated_SNPs_23116 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 14bp
chr7 142460295 142460295 1 + C T GBM 142460290 + 142460270 142460310 41 TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTG TGATCCTCACAGCCGACTACCCAGATGAGCTGCAGTGCCTG < 41bp 1 0.491637866122042 1 0.640694558620453 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460290 chr7:142460295 synonymous SNV . 0 26 hm5C_associated_SNPs_23117 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 14bp
chr7 142460295 142460295 1 + C T GBM 142460291 + 142460271 142460311 41 GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGG GATCCTCACAGCCGACTACCCAGATGAGCTGCAGTGCCTGG < 41bp 1 0.548851017588772 1 0.706177532672882 experiment 0.902297964822455 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460291 chr7:142460295 synonymous SNV . 0 25 hm5C_associated_SNPs_23118 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 14bp
chr7 142460295 142460295 1 + C T GBM 142460299 + 142460279 142460319 41 CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT CAGCCGACTACCCAGATGAGCTGCAGTGCCTGGATGCTCCT < 41bp 1 0.713650249682942 1 0.122036069631577 experiment 0.572699500634115 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460299 chr7:142460295 synonymous SNV . 0 17 hm5C_associated_SNPs_23119 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 14bp
chr7 142460295 142460295 1 + C T GBM 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGATGAGCTGCAGTGCCTGGATGCTCCTGTG < 41bp 1 0.283718803520401 1 0.198862165212631 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460295 synonymous SNV . 0 14 hm5C_associated_SNPs_23120 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 14bp
chr7 142460295 142460295 1 + C T GBM 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGATGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG < 41bp 1 0.226460912547505 1 0.115151464939117 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460295 synonymous SNV . 0 9 hm5C_associated_SNPs_23121 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 14bp
chr7 142460295 142460295 1 + C T GBM 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA TGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA < 41bp 1 0.451683962762298 1 0.30585965514183 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460295 synonymous SNV . 0 1 hm5C_associated_SNPs_23122 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 14bp
chr8 22037908 22037908 1 + C T GBM 22037894 + 22037874 22037914 41 CTCACAGCCTGTGGAGAGACCCTGCAAGACAGCACAGGCAA CTCACAGCCTGTGGAGAGACCCTGCAAGACAGCATAGGCAA < 41bp 1 0.102706427773966 1 0.197547316551208 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037894 chr8:22037908 nonsynonymous SNV 0.986 1 35 hm5C_associated_SNPs_23125 0 0 0 0 2 BMP1 chr8:22037881 3'AG 22037881 Downstream 28bp
chr8 22037908 22037908 1 + C T GBM 22037894 + 22037874 22037914 41 CTCACAGCCTGTGGAGAGACCCTGCAAGACAGCACAGGCAA CTCACAGCCTGTGGAGAGACCCTGCAAGACAGCATAGGCAA < 41bp 1 0.102706427773966 1 0.197547316551208 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037894 chr8:22037908 nonsynonymous SNV 0.986 1 35 hm5C_associated_SNPs_23125 0 0 0 0 2 BMP1 chr8:22037996 5'GT 22037996 Upstream 89bp
chr2 216190036 216190036 1 + G A GBM 216190020 + 216190000 216190040 41 AGTGGCTTCTCCAGGTGTAACTGTTGAGGAGGCTGTGGAGC AGTGGCTTCTCCAGGTGTAACTGTTGAGGAGGCTGTAGAGC < 41bp 1 0.348903245851499 1 0.129114180803299 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216190020 chr2:216190036 synonymous SNV . 0 37 hm5C_associated_SNPs_23127 0 0 1 0 1 ATIC chr2:216190052 5'GT 216190052 Upstream 17bp
chr22 24466765 24466765 1 + G A GBM 24466762 + 24466742 24466782 41 CTGTACTAGGACTCCTTGCTCCGGCTGAAGGACTATCGGCA CTGTACTAGGACTCCTTGCTCCGACTGAAGGACTATCGGCA < 41bp 1 0.0755133228254924 1 0.743984818458557 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24466762 chr22:24466765 synonymous SNV . 0 24 hm5C_associated_SNPs_23128 0 0 1 0 1 CABIN1 chr22:24466751 3'AG 24466751 Downstream 15bp
chr22 24466765 24466765 1 + G A GBM 24466763 + 24466743 24466783 41 TGTACTAGGACTCCTTGCTCCGGCTGAAGGACTATCGGCAG TGTACTAGGACTCCTTGCTCCGACTGAAGGACTATCGGCAG < 41bp 1 0.28169324477542 1 0.29466450214386 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24466763 chr22:24466765 synonymous SNV . 0 23 hm5C_associated_SNPs_23129 0 0 1 0 1 CABIN1 chr22:24466751 3'AG 24466751 Downstream 15bp
chr22 24466765 24466765 1 + G A GBM 24466766 + 24466746 24466786 41 ACTAGGACTCCTTGCTCCGGCTGAAGGACTATCGGCAGTGT ACTAGGACTCCTTGCTCCGACTGAAGGACTATCGGCAGTGT < 41bp 1 0.545331934792319 1 0.42811793088913 experiment 0.909336130415361 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24466766 chr22:24466765 synonymous SNV . 0 20 hm5C_associated_SNPs_23130 0 0 1 0 1 CABIN1 chr22:24466751 3'AG 24466751 Downstream 15bp
chr19 41111402 41111402 1 + G A GBM 41111411 + 41111391 41111431 41 GGCCCTTGGGAGGAGGCGGACGCTGAGGCGGTGGCGCGGGC GGCCCTTGGGAAGAGGCGGACGCTGAGGCGGTGGCGCGGGC < 41bp 1 0.551930989527806 1 0.492002993822098 experiment 0.896138020944388 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41111411 chr19:41111402 synonymous SNV . 0 12 hm5C_associated_SNPs_23131 0 0 1 0 1 LTBP4 chr19:41111311 3'AG 41111311 Downstream 92bp
chr19 41084426 41084426 1 + C A GBM 41084423 + 41084403 41084443 41 TCTTCTTGTGGAAACGTCCTCTTCAATGGTTACCTGCCGCC TCTTCTTGTGGAAACGTCCTCTTAAATGGTTACCTGCCGCC < 41bp 1 0.434953567956631 1 0.583484768867493 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41084423 chr19:41084426 stopgain 1.000 3 24 hm5C_associated_SNPs_23132 0 0 1 0 1 SHKBP1 chr19:41084448 5'GT 41084448 Upstream 23bp
chr1 26885365 26885365 1 + C T GBM 26885380 + 26885360 26885400 41 GCCACCGGCCTGATGGAAGACGACGGCAAGCCTCGTGCCCC GCCACTGGCCTGATGGAAGACGACGGCAAGCCTCGTGCCCC < 41bp 1 0.772888403120975 1 0.563632190227509 experiment 0.45422319375805 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26885380 chr1:26885365 synonymous SNV . 0 6 hm5C_associated_SNPs_23141 0 0 1 0 2 RPS6KA1 chr1:26885298 3'AG 26885298 Downstream 68bp
chr1 26885365 26885365 1 + C T GBM 26885380 + 26885360 26885400 41 GCCACCGGCCTGATGGAAGACGACGGCAAGCCTCGTGCCCC GCCACTGGCCTGATGGAAGACGACGGCAAGCCTCGTGCCCC < 41bp 1 0.772888403120975 1 0.563632190227509 experiment 0.45422319375805 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26885380 chr1:26885365 synonymous SNV . 0 6 hm5C_associated_SNPs_23141 0 0 1 0 2 RPS6KA1 chr1:26885428 5'GT 26885428 Upstream 64bp
chr16 67578997 67578997 1 + G A GBM 67578992 + 67578972 67579012 41 CAGTATGGTGCCCGCCTCTCCCTGCGCCAGCCAGGCTTGGC CAGTATGGTGCCCGCCTCTCCCTGCACCAGCCAGGCTTGGC < 41bp 1 0.0804556514324442 1 0.264137327671051 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578992 chr16:67578997 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_23142 0 0 1 0 1 RIPOR1 chr16:67579020 5'GT 67579020 Upstream 24bp
chr6 31637206 31637206 1 + G A GBM 31637187 + 31637167 31637207 41 AAGTCATCAAGACACCATCACACGGATGGCGCCTACTTCGG AAGTCATCAAGACACCATCACACGGATGGCGCCTACTTCAG < 41bp 1 0.771799566742908 1 0.101768970489502 experiment 0.456400866514185 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CSNK2B ENSG00000204435;ENSG00000263020 CDS Human other chr6:31637187 chr6:31637206 nonsynonymous SNV 0.996 4 40 hm5C_associated_SNPs_23143 0 0 1 0 1 CSNK2B chr6:31637285 5'GT 31637285 Upstream 80bp
chr11 126143242 126143242 1 + C T GBM 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCTGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA < 41bp 1 0.478002479910502 1 0.270557343959808 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143242 synonymous SNV . 0 7 hm5C_associated_SNPs_23144 0 0 1 0 2 FOXRED1 chr11:126143211 3'AG 126143211 Downstream 32bp
chr11 126143242 126143242 1 + C T GBM 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCTGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA < 41bp 1 0.478002479910502 1 0.270557343959808 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143242 synonymous SNV . 0 7 hm5C_associated_SNPs_23144 0 0 1 0 2 FOXRED1 chr11:126143231 3'AG 126143231 Downstream 12bp
chr7 130021608 130021608 1 + G A GBM 130021593 + 130021573 130021613 41 ATCAGCTATGAGACCATGATCGAGGACGTGCAGTCGCTGCT ATCAGCTATGAGACCATGATCGAGGACGTGCAGTCACTGCT < 41bp 1 0.793269110200476 1 0.951992630958557 experiment 0.413461779599048 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021593 chr7:130021608 synonymous SNV . 0 36 hm5C_associated_SNPs_23145 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 73bp
chr7 130021608 130021608 1 + G A GBM 130021593 + 130021573 130021613 41 ATCAGCTATGAGACCATGATCGAGGACGTGCAGTCGCTGCT ATCAGCTATGAGACCATGATCGAGGACGTGCAGTCACTGCT < 41bp 1 0.793269110200476 1 0.951992630958557 experiment 0.413461779599048 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021593 chr7:130021608 synonymous SNV . 0 36 hm5C_associated_SNPs_23145 0 0 0 0 2 CPA1 chr7:130021704 5'GT 130021704 Upstream 97bp
chr2 216995664 216995664 1 + C T GBM 216995648 + 216995628 216995668 41 TCTCTAAAGTGGATGAGGAACAAATGAAATATAAATCGGAG TCTCTAAAGTGGATGAGGAACAAATGAAATATAAATTGGAG < 41bp 1 0.336832638998427 1 0.478262215852737 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout XRCC5 ENSG00000079246 CDS Human protein_coding chr2:216995648 chr2:216995664 nonsynonymous SNV 0.979 0 37 hm5C_associated_SNPs_23149 0 0 1 0 1 XRCC5 chr2:216995710 5'GT 216995710 Upstream 47bp
chr2 220097297 220097297 1 + A G GBM 220097293 + 220097273 220097313 41 GACACTGGATCGGGAGAGGGCTACATTTGAGAAGTTGAGCC GACACTGGATCGGGAGAGGGCTACGTTTGAGAAGTTGAGCC < 41bp 1 0.654135758225371 1 0.541342735290527 experiment 0.691728483549257 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220097293 chr2:220097297 synonymous SNV . 0 25 hm5C_associated_SNPs_23151 0 0 1 0 1 ANKZF1 chr2:220097212 3'AG 220097212 Downstream 86bp
chr16 56970705 56970705 1 + C A GBM 56970702 + 56970682 56970722 41 GGAAGTTCTTCGGAACCTTTCTTCCCCTGGATGGGAAAACA GGAAGTTCTTCGGAACCTTTCTTACCCTGGATGGGAAAACA < 41bp 1 0.209181725537996 1 0.192314773797989 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56970702 chr16:56970705 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_23152 0 0 1 0 1 HERPUD1 chr16:56970729 5'GT 56970729 Upstream 25bp
chr2 220097276 220097276 1 + A G GBM 220097293 + 220097273 220097313 41 GACACTGGATCGGGAGAGGGCTACATTTGAGAAGTTGAGCC GACGCTGGATCGGGAGAGGGCTACATTTGAGAAGTTGAGCC < 41bp 1 0.779027675198186 1 0.845437407493591 experiment 0.441944649603629 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220097293 chr2:220097276 synonymous SNV . 0 4 hm5C_associated_SNPs_23154 0 0 1 0 1 ANKZF1 chr2:220097212 3'AG 220097212 Downstream 65bp
chr6 26091215 26091215 1 + G A GBM 26091207 + 26091187 26091227 41 TCGCCGTGTGGAGCCCCGAACTCCATGGGTTTCCAGTAGAA TCGCCGTGTGGAGCCCCGAACTCCATGGATTTCCAGTAGAA < 41bp 1 0.785689227561246 1 0.912990033626556 experiment 0.428621544877507 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26091207 chr6:26091215 nonsynonymous SNV 0.031 0 29 hm5C_associated_SNPs_23155 0 0 0 0 1 HFE chr6:26091138 3'AG 26091138 Downstream 78bp
chr1 24996658 24996658 1 + G A GBM 24996652 + 24996632 24996672 41 GTCTGTAAGAAGGGTCTCATCCTCCCGATCTGTCTCCGGGT GTCTGTAAGAAGGGTCTCATCCTCCCAATCTGTCTCCGGGT < 41bp 1 0.185957194201404 1 0.049877256155014 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996652 chr1:24996658 nonsynonymous SNV 0.969 2 27 hm5C_associated_SNPs_23156 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 48bp
chr1 24996658 24996658 1 + G A GBM 24996653 + 24996633 24996673 41 TCTGTAAGAAGGGTCTCATCCTCCCGATCTGTCTCCGGGTC TCTGTAAGAAGGGTCTCATCCTCCCAATCTGTCTCCGGGTC < 41bp 1 0.72823296677976 1 0.39053738117218 experiment 0.54353406644048 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996653 chr1:24996658 nonsynonymous SNV 0.969 2 26 hm5C_associated_SNPs_23157 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 48bp
chr1 24996658 24996658 1 + G A GBM 24996673 + 24996653 24996693 41 CTCCCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAA CTCCCAATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAA < 41bp 1 0.558272767260607 1 0.0307576358318329 experiment 0.883454465478786 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996673 chr1:24996658 nonsynonymous SNV 0.969 2 6 hm5C_associated_SNPs_23158 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 48bp
chr1 24996658 24996658 1 + G A GBM 24996676 + 24996656 24996696 41 CCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGC CCAATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGC < 41bp 1 0.628975568277123 1 0.30437907576561 experiment 0.742048863445754 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996676 chr1:24996658 nonsynonymous SNV 0.969 2 3 hm5C_associated_SNPs_23159 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 48bp
chr14 97014175 97014175 1 + A G GBM 97014156 + 97014136 97014176 41 TATAGGCAAGCAATAAACAGCAAGATGTTTGAGGTGGATAT TATAGGCAAGCAATAAACAGCAAGATGTTTGAGGTGGATGT < 41bp 1 0.529182206424222 1 0.233920693397522 experiment 0.941635587151555 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97014156 chr14:97014175 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_23163 0 0 1 0 2 PAPOLA chr14:97014134 3'AG 97014134 Downstream 42bp
chr14 97014175 97014175 1 + A G GBM 97014156 + 97014136 97014176 41 TATAGGCAAGCAATAAACAGCAAGATGTTTGAGGTGGATAT TATAGGCAAGCAATAAACAGCAAGATGTTTGAGGTGGATGT < 41bp 1 0.529182206424222 1 0.233920693397522 experiment 0.941635587151555 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97014156 chr14:97014175 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_23163 0 0 1 0 2 PAPOLA chr14:97014255 5'GT 97014255 Upstream 81bp
chr3 184648327 184648327 1 + G T GBM 184648321 + 184648301 184648341 41 GACACAGTGCAGAGGAGAAGCAGTCTGTATGGCAGAAAGCA GACACAGTGCAGAGGAGAAGCAGTCTTTATGGCAGAAAGCA < 41bp 1 0.125388488312282 1 0.296919763088226 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS8 ENSG00000156931 CDS Human protein_coding chr3:184648321 chr3:184648327 nonsynonymous SNV 0.993 1 27 hm5C_associated_SNPs_23164 0 0 1 0 2 VPS8 chr3:184648258 3'AG 184648258 Downstream 70bp
chr3 184648327 184648327 1 + G T GBM 184648321 + 184648301 184648341 41 GACACAGTGCAGAGGAGAAGCAGTCTGTATGGCAGAAAGCA GACACAGTGCAGAGGAGAAGCAGTCTTTATGGCAGAAAGCA < 41bp 1 0.125388488312282 1 0.296919763088226 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS8 ENSG00000156931 CDS Human protein_coding chr3:184648321 chr3:184648327 nonsynonymous SNV 0.993 1 27 hm5C_associated_SNPs_23164 0 0 1 0 2 VPS8 chr3:184648356 5'GT 184648356 Upstream 30bp
chr10 14896134 14896134 1 + C A GBM 14896127 + 14896107 14896147 41 CTATGTTTTTAATTTAGATCCTTCAAACATGATGTGAGAGG CTATGTTTTTAATTTAGATCCTTCAAAAATGATGTGAGAGG < 41bp 1 0.173579707264252 1 0.415853708982468 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSPA14 ENSG00000187522 CDS Human protein_coding chr10:14896127 chr10:14896134 nonsynonymous SNV 0.974 2 28 hm5C_associated_SNPs_23169 0 0 1 0 1 HSPA14 chr10:14896124 3'AG 14896124 Downstream 11bp
chr7 33014896 33014896 1 + C A GBM 33014888 + 33014868 33014908 41 GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCG GTTCAGATTCACACCTATTTCAAGCCCCAGAGTTGCCCTCG < 41bp 1 0.533546415641378 1 0.789648473262787 experiment 0.932907168717244 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014888 chr7:33014896 nonsynonymous SNV 0.940 0 29 hm5C_associated_SNPs_23174 0 0 0 0 1 FKBP9 chr7:33014983 5'GT 33014983 Upstream 88bp
chr7 33014896 33014896 1 + C A GBM 33014892 + 33014872 33014912 41 AGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCGGACC AGATTCACACCTATTTCAAGCCCCAGAGTTGCCCTCGGACC < 41bp 1 0.36002970797244 1 0.264664471149445 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014892 chr7:33014896 nonsynonymous SNV 0.940 0 25 hm5C_associated_SNPs_23175 0 0 0 0 1 FKBP9 chr7:33014983 5'GT 33014983 Upstream 88bp
chr19 18961017 18961017 1 + G A GBM 18961004 + 18960984 18961024 41 TGTCGCAACGTCTTCCTCCTCGGCTTCATCCCGGCCAAAGC TGTCGCAACGTCTTCCTCCTCGGCTTCATCCCGACCAAAGC < 41bp 1 0.562590416279872 1 0.817958235740662 experiment 0.874819167440257 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18961004 chr19:18961017 nonsynonymous SNV 0.848 4 34 hm5C_associated_SNPs_23176 0 0 1 0 1 UPF1 chr19:18961051 5'GT 18961051 Upstream 35bp
chr1 171519332 171519332 1 + C T GBM 171519315 + 171519295 171519335 41 TGGTTTTACTGAAGTGGTATCCAAAAAACAACAAAAACGTT TGGTTTTACTGAAGTGGTATCCAAAAAACAACAAAAATGTT < 41bp 1 0.076175944828442 1 0.740661382675171 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171519315 chr1:171519332 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_23177 0 0 1 0 1 PRRC2C chr1:171519379 5'GT 171519379 Upstream 48bp
chr19 4950641 4950641 1 + C G GBM 4950627 + 4950607 4950647 41 CTGACTCTCCCTGCAGGGCGCTGGCTCTCAACTGCTTTGCT CTGACTCTCCCTGCAGGGCGCTGGCTCTCAACTGGTTTGCT < 41bp 1 0.193096081858307 1 0.073163777589798 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4950627 chr19:4950641 . 0.447 3 35 hm5C_associated_SNPs_23180 0 0 0 0 1 UHRF1 chr19:4950623 3'AG 4950623 Downstream 19bp
chr19 4950641 4950641 1 + C G GBM 4950631 + 4950611 4950651 41 CTCTCCCTGCAGGGCGCTGGCTCTCAACTGCTTTGCTCCCA CTCTCCCTGCAGGGCGCTGGCTCTCAACTGGTTTGCTCCCA < 41bp 1 0.173753322040629 1 0.180054008960724 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4950631 chr19:4950641 . 0.447 3 31 hm5C_associated_SNPs_23181 0 0 0 0 1 UHRF1 chr19:4950623 3'AG 4950623 Downstream 19bp
chr14 23239012 23239012 1 + C T GBM 23239030 + 23239010 23239050 41 TGCCCGCTGCCTGATTTTTCCTCTCATCGTGACGGGCCAGC TGTCCGCTGCCTGATTTTTCCTCTCATCGTGACGGGCCAGC < 41bp 1 0.342896175163161 1 0.0425302088260651 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXA1L ENSG00000155463 CDS Human protein_coding chr14:23239030 chr14:23239012 nonsynonymous SNV 0.988 3 3 hm5C_associated_SNPs_23184 0 0 1 0 1 OXA1L chr14:23239000 3'AG 23239000 Downstream 13bp
chr2 167056293 167056293 1 - C T GBM 167056285 - 167056265 167056305 41 CCAGGATTGGCCGAATCCTACGTCTAGTCAAAGGAGCAAAG CCAGGATTGGCCAAATCCTACGTCTAGTCAAAGGAGCAAAG < 41bp 1 0.132637491731681 1 0.0363812744617462 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SCN9A ENSG00000169432 CDS Human protein_coding chr2:167056285 chr2:167056293 nonsynonymous SNV 0.768 5 13 hm5C_associated_SNPs_23185 0 0 0 0 1 SCN9A chr2:167056374 3'AG 167056374 Downstream 82bp
chr22 20079086 20079086 1 + G A GBM 20079093 + 20079073 20079113 41 GCAGGCGGAGTCCGAGAGGCCCATCTTGCCAGCCAATCAGA GCAGGCGGAGTCCAAGAGGCCCATCTTGCCAGCCAATCAGA < 41bp 1 0.0479973878963221 1 0.062752366065979 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGCR8 ENSG00000128191 CDS Human protein_coding chr22:20079093 chr22:20079086 nonsynonymous SNV 0.958 1 14 hm5C_associated_SNPs_23186 0 0 1 0 1 DGCR8 chr22:20079155 5'GT 20079155 Upstream 70bp
chr3 52237939 52237939 1 + C T GBM 52237938 + 52237918 52237958 41 TGAAAACCGATGGAGGGGATCCCAGTGGACTGCTGAAGAAC TGAAAACCGATGGAGGGGATCTCAGTGGACTGCTGAAGAAC < 41bp 1 0.655017188005016 1 0.300185084342957 experiment 0.689965623989968 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52237938 chr3:52237939 nonsynonymous SNV 0.204 1 22 hm5C_associated_SNPs_23187 0 0 1 0 2 ALAS1 chr3:52237879 3'AG 52237879 Downstream 61bp
chr3 52237939 52237939 1 + C T GBM 52237938 + 52237918 52237958 41 TGAAAACCGATGGAGGGGATCCCAGTGGACTGCTGAAGAAC TGAAAACCGATGGAGGGGATCTCAGTGGACTGCTGAAGAAC < 41bp 1 0.655017188005016 1 0.300185084342957 experiment 0.689965623989968 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52237938 chr3:52237939 nonsynonymous SNV 0.204 1 22 hm5C_associated_SNPs_23187 0 0 1 0 2 ALAS1 chr3:52238028 5'GT 52238028 Upstream 90bp
chr16 56867244 56867244 1 + A G GBM 56867224 + 56867204 56867244 41 GCAGTTGCCTTTCTTTTCCGCATGGAGCGGCTGCGCTGCCA GCAGTTGCCTTTCTTTTCCGCATGGAGCGGCTGCGCTGCCG < 41bp 1 0.49631908450105 1 0.12014964222908 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP93 ENSG00000102900 CDS Human protein_coding chr16:56867224 chr16:56867244 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_23188 0 0 1 0 1 NUP93 chr16:56867318 5'GT 56867318 Upstream 75bp
chr12 6618912 6618912 1 + C T GBM 6618914 + 6618894 6618934 41 GCCTTTCGAGCTCAGGGGCCCCTGGCTATGCTGCAGCACTT GCCTTTCGAGCTCAGGGGTCCCTGGCTATGCTGCAGCACTT < 41bp 1 0.129104836859806 1 0.101226806640625 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6618914 chr12:6618912 nonsynonymous SNV 0.958 0 19 hm5C_associated_SNPs_23189 0 0 1 0 2 NCAPD2 chr12:6618883 3'AG 6618883 Downstream 30bp
chr12 6618912 6618912 1 + C T GBM 6618914 + 6618894 6618934 41 GCCTTTCGAGCTCAGGGGCCCCTGGCTATGCTGCAGCACTT GCCTTTCGAGCTCAGGGGTCCCTGGCTATGCTGCAGCACTT < 41bp 1 0.129104836859806 1 0.101226806640625 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6618914 chr12:6618912 nonsynonymous SNV 0.958 0 19 hm5C_associated_SNPs_23189 0 0 1 0 2 NCAPD2 chr12:6618958 5'GT 6618958 Upstream 47bp
chr7 140379047 140379047 1 + C T GBM 140379056 + 140379036 140379076 41 CCTCTGCGCCCCTTTGTCACCAGAGAAGTCTTGGTGGAAAC CCTCTGCGCCCTTTTGTCACCAGAGAAGTCTTGGTGGAAAC < 41bp 1 0.558324115567962 1 0.685140252113342 experiment 0.883351768864075 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140379056 chr7:140379047 synonymous SNV . 0 12 hm5C_associated_SNPs_23190 0 0 1 0 2 ADCK2 chr7:140378955 3'AG 140378955 Downstream 93bp
chr7 140379047 140379047 1 + C T GBM 140379056 + 140379036 140379076 41 CCTCTGCGCCCCTTTGTCACCAGAGAAGTCTTGGTGGAAAC CCTCTGCGCCCTTTTGTCACCAGAGAAGTCTTGGTGGAAAC < 41bp 1 0.558324115567962 1 0.685140252113342 experiment 0.883351768864075 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140379056 chr7:140379047 synonymous SNV . 0 12 hm5C_associated_SNPs_23190 0 0 1 0 2 ADCK2 chr7:140379083 5'GT 140379083 Upstream 37bp
chr12 110474083 110474083 1 + T C GBM 110474069 + 110474049 110474089 41 ACATTTGTCTTTGCCAGGAACTTTCAGGACCAGCTTCGAAT ACATTTGTCTTTGCCAGGAACTTTCAGGACCAGCCTCGAAT < 41bp 1 0.0362559954481559 1 0.0379354953765869 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110474069 chr12:110474083 nonsynonymous SNV 0.998 0 35 hm5C_associated_SNPs_23191 0 0 1 0 2 ANKRD13A chr12:110474066 3'AG 110474066 Downstream 18bp
chr12 110474083 110474083 1 + T C GBM 110474069 + 110474049 110474089 41 ACATTTGTCTTTGCCAGGAACTTTCAGGACCAGCTTCGAAT ACATTTGTCTTTGCCAGGAACTTTCAGGACCAGCCTCGAAT < 41bp 1 0.0362559954481559 1 0.0379354953765869 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110474069 chr12:110474083 nonsynonymous SNV 0.998 0 35 hm5C_associated_SNPs_23191 0 0 1 0 2 ANKRD13A chr12:110474133 5'GT 110474133 Upstream 51bp
chr7 135312778 135312778 1 + C T GBM 135312770 + 135312750 135312790 41 TCATCCCTACCCCAGTGGATCGCTACCGCCAGATTCTCCTC TCATCCCTACCCCAGTGGATCGCTACCGTCAGATTCTCCTC < 41bp 1 0.486846184061189 1 0.0886625647544861 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135312770 chr7:135312778 synonymous SNV . 0 29 hm5C_associated_SNPs_23192 0 0 1 0 2 NUP205 chr7:135312721 3'AG 135312721 Downstream 58bp
chr7 135312778 135312778 1 + C T GBM 135312770 + 135312750 135312790 41 TCATCCCTACCCCAGTGGATCGCTACCGCCAGATTCTCCTC TCATCCCTACCCCAGTGGATCGCTACCGTCAGATTCTCCTC < 41bp 1 0.486846184061189 1 0.0886625647544861 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135312770 chr7:135312778 synonymous SNV . 0 29 hm5C_associated_SNPs_23192 0 0 1 0 2 NUP205 chr7:135312859 5'GT 135312859 Upstream 82bp
chrX 129173191 129173191 1 + G A GBM 129173210 + 129173190 129173230 41 GGCTACCTACTCGGGTCAGACAGCCATGAAGCTGGCCAGCA GACTACCTACTCGGGTCAGACAGCCATGAAGCTGGCCAGCA < 41bp 1 0.356018550459258 1 0.567987680435181 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129173210 chrX:129173191 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_23193 0 0 1 0 2 BCORL1 chrX:129173112 3'AG 129173112 Downstream 80bp
chrX 129173191 129173191 1 + G A GBM 129173210 + 129173190 129173230 41 GGCTACCTACTCGGGTCAGACAGCCATGAAGCTGGCCAGCA GACTACCTACTCGGGTCAGACAGCCATGAAGCTGGCCAGCA < 41bp 1 0.356018550459258 1 0.567987680435181 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129173210 chrX:129173191 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_23193 0 0 1 0 2 BCORL1 chrX:129173257 5'GT 129173257 Upstream 67bp
chr15 66797685 66797685 1 - G T GBM 66797669 - 66797649 66797689 41 GCCGCTCCCACATCCCGCCCCAATGTGAGAGCGGTACCGGA GCCGATCCCACATCCCGCCCCAATGTGAGAGCGGTACCGGA < 41bp 1 0.423058206661415 1 0.136068284511566 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZWILCH ENSG00000174442 CDS Human other chr15:66797669 chr15:66797685 nonsynonymous SNV 0.001 0 5 hm5C_associated_SNPs_23194 0 0 0 0 1 ZWILCH chr15:66797666 5'GT 66797666 Upstream 20bp
chr15 66797685 66797685 1 - G T GBM 66797670 - 66797650 66797690 41 AGCCGCTCCCACATCCCGCCCCAATGTGAGAGCGGTACCGG AGCCGATCCCACATCCCGCCCCAATGTGAGAGCGGTACCGG < 41bp 1 0.25741980361571 1 0.102843403816223 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZWILCH ENSG00000174442 CDS Human other chr15:66797670 chr15:66797685 nonsynonymous SNV 0.001 0 6 hm5C_associated_SNPs_23195 0 0 0 0 1 ZWILCH chr15:66797666 5'GT 66797666 Upstream 20bp
chr15 66797685 66797685 1 - G T GBM 66797671 - 66797651 66797691 41 CAGCCGCTCCCACATCCCGCCCCAATGTGAGAGCGGTACCG CAGCCGATCCCACATCCCGCCCCAATGTGAGAGCGGTACCG < 41bp 1 0.393829640226478 1 0.204090565443039 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZWILCH ENSG00000174442 CDS Human other chr15:66797671 chr15:66797685 nonsynonymous SNV 0.001 0 7 hm5C_associated_SNPs_23196 0 0 0 0 1 ZWILCH chr15:66797666 5'GT 66797666 Upstream 20bp
chr11 10774300 10774300 1 + A G GBM 10774299 + 10774279 10774319 41 CAGGAACACACACAACTGCACATATGGATTGCTTTGGCGGT CAGGAACACACACAACTGCACGTATGGATTGCTTTGGCGGT < 41bp 1 0.0848447928180342 1 0.0312488377094269 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CTR9 ENSG00000198730 CDS Human protein_coding chr11:10774299 chr11:10774300 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_23198 0 0 1 0 2 CTR9 chr11:10774219 3'AG 10774219 Downstream 82bp
chr11 10774300 10774300 1 + A G GBM 10774299 + 10774279 10774319 41 CAGGAACACACACAACTGCACATATGGATTGCTTTGGCGGT CAGGAACACACACAACTGCACGTATGGATTGCTTTGGCGGT < 41bp 1 0.0848447928180342 1 0.0312488377094269 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CTR9 ENSG00000198730 CDS Human protein_coding chr11:10774299 chr11:10774300 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_23198 0 0 1 0 2 CTR9 chr11:10774317 5'GT 10774317 Upstream 18bp
chr11 10774300 10774300 1 + A G GBM 10774310 + 10774290 10774330 41 ACAACTGCACATATGGATTGCTTTGGCGGTCAGTATTCATG ACAACTGCACGTATGGATTGCTTTGGCGGTCAGTATTCATG < 41bp 1 0.0852487711694153 1 0.0105448067188263 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTR9 ENSG00000198730 CDS Human protein_coding chr11:10774310 chr11:10774300 nonsynonymous SNV 0.998 1 11 hm5C_associated_SNPs_23199 0 0 1 0 2 CTR9 chr11:10774219 3'AG 10774219 Downstream 82bp
chr11 10774300 10774300 1 + A G GBM 10774310 + 10774290 10774330 41 ACAACTGCACATATGGATTGCTTTGGCGGTCAGTATTCATG ACAACTGCACGTATGGATTGCTTTGGCGGTCAGTATTCATG < 41bp 1 0.0852487711694153 1 0.0105448067188263 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTR9 ENSG00000198730 CDS Human protein_coding chr11:10774310 chr11:10774300 nonsynonymous SNV 0.998 1 11 hm5C_associated_SNPs_23199 0 0 1 0 2 CTR9 chr11:10774317 5'GT 10774317 Upstream 18bp
chr2 242683167 242683167 1 + C T GBM 242683180 + 242683160 242683200 41 CAACCAACGCTGGAGGCCTGCGGTTTCTTCGATATGGCTCA CAACCAATGCTGGAGGCCTGCGGTTTCTTCGATATGGCTCA < 41bp 1 0.381355097269896 1 0.504148662090302 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242683180 chr2:242683167 nonsynonymous SNV . 0 8 hm5C_associated_SNPs_23205 0 0 1 0 1 D2HGDH chr2:242683230 5'GT 242683230 Upstream 64bp
chr6 133844286 133844286 1 + T C GBM 133844283 + 133844263 133844303 41 TAGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTG TAGTTTAGGAGGTGCTTTCCCCACTGAGAATATTTACAGTG < 41bp 1 0.19448322376491 1 0.422466069459915 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844283 chr6:133844286 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_23206 0 0 0 0 2 EYA4 chr6:133844194 3'AG 133844194 Downstream 93bp
chr6 133844286 133844286 1 + T C GBM 133844283 + 133844263 133844303 41 TAGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTG TAGTTTAGGAGGTGCTTTCCCCACTGAGAATATTTACAGTG < 41bp 1 0.19448322376491 1 0.422466069459915 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844283 chr6:133844286 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_23206 0 0 0 0 2 EYA4 chr6:133844315 5'GT 133844315 Upstream 30bp
chr6 133844286 133844286 1 + T C GBM 133844284 + 133844264 133844304 41 AGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTGC AGTTTAGGAGGTGCTTTCCCCACTGAGAATATTTACAGTGC < 41bp 1 0.233419339639509 1 0.316433101892471 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844284 chr6:133844286 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_23207 0 0 0 0 2 EYA4 chr6:133844194 3'AG 133844194 Downstream 93bp
chr6 133844286 133844286 1 + T C GBM 133844284 + 133844264 133844304 41 AGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTGC AGTTTAGGAGGTGCTTTCCCCACTGAGAATATTTACAGTGC < 41bp 1 0.233419339639509 1 0.316433101892471 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844284 chr6:133844286 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_23207 0 0 0 0 2 EYA4 chr6:133844315 5'GT 133844315 Upstream 30bp
chr7 157041143 157041143 1 + G A GBM 157041160 + 157041140 157041180 41 GTGGACATTCACCACCTCGCCTCCCTAGACCCTGAGGTGTA GTGAACATTCACCACCTCGCCTCCCTAGACCCTGAGGTGTA < 41bp 1 0.322942011912317 1 0.547413289546967 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE3C ENSG00000009335 CDS Human protein_coding chr7:157041160 chr7:157041143 nonsynonymous SNV 0.976 2 4 hm5C_associated_SNPs_23208 0 0 1 0 1 UBE3C chr7:157041062 3'AG 157041062 Downstream 82bp
chr18 77802161 77802161 1 + T C GBM 77802159 + 77802139 77802179 41 CTTTTGATGTCCCAGCAGACCCTGAGGAATGTGCCACCGAT CTTTTGATGTCCCAGCAGACCCCGAGGAATGTGCCACCGAT < 41bp 1 0.7817240727764 1 0.573329329490662 experiment 0.4365518544472 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBFA ENSG00000101546 CDS Human protein_coding chr18:77802159 chr18:77802161 nonsynonymous SNV 0.182 3 23 hm5C_associated_SNPs_23210 0 0 1 0 2 RBFA chr18:77802135 3'AG 77802135 Downstream 27bp
chr18 77802161 77802161 1 + T C GBM 77802159 + 77802139 77802179 41 CTTTTGATGTCCCAGCAGACCCTGAGGAATGTGCCACCGAT CTTTTGATGTCCCAGCAGACCCCGAGGAATGTGCCACCGAT < 41bp 1 0.7817240727764 1 0.573329329490662 experiment 0.4365518544472 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBFA ENSG00000101546 CDS Human protein_coding chr18:77802159 chr18:77802161 nonsynonymous SNV 0.182 3 23 hm5C_associated_SNPs_23210 0 0 1 0 2 RBFA chr18:77802219 5'GT 77802219 Upstream 59bp
chr14 23070613 23070613 1 + C T GBM 23070600 + 23070580 23070620 41 GCTGGCTGAGTAGCTGGCTGCCCACGTGGCGCCCCACTTCC GCTGGCTGAGTAGCTGGCTGCCCACGTGGCGCCTCACTTCC < 41bp 1 0.297664485867172 1 0.156561553478241 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23070600 chr14:23070613 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_23211 0 0 1 0 1 ABHD4 chr14:23070572 3'AG 23070572 Downstream 42bp
chr19 54621969 54621969 1 + T C GBM 54621957 + 54621937 54621977 41 TTCTCCTTTCCTACAGTTTGCTGAGATTATGATGAAGATTG TTCTCCTTTCCTACAGTTTGCTGAGATTATGACGAAGATTG < 41bp 1 0.275665929080682 1 0.0819819271564484 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54621957 chr19:54621969 nonsynonymous SNV 1.000 0 33 hm5C_associated_SNPs_23212 0 0 1 0 2 PRPF31 chr19:54621953 3'AG 54621953 Downstream 17bp
chr19 54621969 54621969 1 + T C GBM 54621957 + 54621937 54621977 41 TTCTCCTTTCCTACAGTTTGCTGAGATTATGATGAAGATTG TTCTCCTTTCCTACAGTTTGCTGAGATTATGACGAAGATTG < 41bp 1 0.275665929080682 1 0.0819819271564484 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54621957 chr19:54621969 nonsynonymous SNV 1.000 0 33 hm5C_associated_SNPs_23212 0 0 1 0 2 PRPF31 chr19:54622013 5'GT 54622013 Upstream 45bp
chr3 4774885 4774885 1 + C T GBM 4774884 + 4774864 4774904 41 CCCACTGTCAGCAGGAGGACCCGGCAAGCCCGGGGGAGGAG CCCACTGTCAGCAGGAGGACCTGGCAAGCCCGGGGGAGGAG < 41bp 1 0.281888167372067 1 0.277482539415359 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4774884 chr3:4774885 synonymous SNV . 0 22 hm5C_associated_SNPs_23213 0 0 1 0 1 ITPR1 chr3:4774904 5'GT 4774904 Upstream 20bp
chr3 130672707 130672707 1 + A G GBM 130672711 + 130672691 130672731 41 CAGCTTGACAGGTGAGACAACGCCTTGTTCTAAGGTGACAG CAGCTTGACAGGTGAGGCAACGCCTTGTTCTAAGGTGACAG < 41bp 1 0.628484517287792 1 0.0854204595088959 experiment 0.743030965424416 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130672711 chr3:130672707 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_23214 0 0 1 0 1 ATP2C1 chr3:130672665 3'AG 130672665 Downstream 43bp
chrX 49853380 49853380 1 + G A GBM 49853386 + 49853366 49853406 41 CCTCTTTATCCCTAGCATGGCTGTTGGTGCTATAGCAGGTC CCTCTTTATCCCTAACATGGCTGTTGGTGCTATAGCAGGTC < 41bp 1 0.159059135035015 1 0.0998833179473877 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLCN5 ENSG00000171365 CDS Human protein_coding chrX:49853386 chrX:49853380 nonsynonymous SNV 1.000 5 15 hm5C_associated_SNPs_23220 0 0 0 0 1 CLCN5 chrX:49853355 3'AG 49853355 Downstream 26bp
chr8 124787442 124787442 1 + C A GBM 124787439 + 124787419 124787459 41 TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGCT TATGAGGAACTGCTAAAGTACAGACGAGATCATCTCATGCT < 41bp 1 0.352883039349034 1 0.364339470863342 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787439 chr8:124787442 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_23222 0 0 0 0 2 FAM91A1 chr8:124787387 3'AG 124787387 Downstream 56bp
chr8 124787442 124787442 1 + C A GBM 124787439 + 124787419 124787459 41 TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGCT TATGAGGAACTGCTAAAGTACAGACGAGATCATCTCATGCT < 41bp 1 0.352883039349034 1 0.364339470863342 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787439 chr8:124787442 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_23222 0 0 0 0 2 FAM91A1 chr8:124787538 5'GT 124787538 Upstream 97bp
chr11 61915978 61915978 1 + G T GBM 61915982 + 61915962 61916002 41 GGGAGAAGGCCCTGCGGCTGCAGAAGGAGCAGCTGCAGAGG GGGAGAAGGCCCTGCGTCTGCAGAAGGAGCAGCTGCAGAGG < 41bp 1 0.795199614882272 1 0.598429203033447 experiment 0.409600770235456 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61915982 chr11:61915978 synonymous SNV . 0 17 hm5C_associated_SNPs_23223 0 0 1 0 1 INCENP chr11:61915948 3'AG 61915948 Downstream 31bp
chr11 61915978 61915978 1 + G T GBM 61915991 + 61915971 61916011 41 CCCTGCGGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAG CCCTGCGTCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAG < 41bp 1 0.223336808380967 1 0.219943106174469 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61915991 chr11:61915978 synonymous SNV . 0 8 hm5C_associated_SNPs_23224 0 0 1 0 1 INCENP chr11:61915948 3'AG 61915948 Downstream 31bp
chr11 61915978 61915978 1 + G T GBM 61915994 + 61915974 61916014 41 TGCGGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAGGAG TGCGTCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAGGAG < 41bp 1 0.553727901216472 1 0.65637594461441 experiment 0.892544197567055 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61915994 chr11:61915978 synonymous SNV . 0 5 hm5C_associated_SNPs_23225 0 0 1 0 1 INCENP chr11:61915948 3'AG 61915948 Downstream 31bp
chr11 61915978 61915978 1 + G T GBM 61915997 + 61915977 61916017 41 GGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAGGAGAAG GTCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAGGAGAAG < 41bp 1 0.37117391248368 1 0.4947569668293 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61915997 chr11:61915978 synonymous SNV . 0 2 hm5C_associated_SNPs_23226 0 0 1 0 1 INCENP chr11:61915948 3'AG 61915948 Downstream 31bp
chr2 232576621 232576621 1 + G T HNSC 232576618 + 232576598 232576638 41 AGAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTA AGAATGAGGAAAATGGGGAGCAGTAGGCTGACAATGAGGTA < 41bp 1 0.435628536724046 1 0.402423739433289 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576618 chr2:232576621 stopgain 0.999 0 24 hm5C_associated_SNPs_23228 0 0 1 0 3 PTMA chr2:232576597 3'AG 232576597 Downstream 25bp
chr2 232576621 232576621 1 + G T HNSC 232576618 + 232576598 232576638 41 AGAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTA AGAATGAGGAAAATGGGGAGCAGTAGGCTGACAATGAGGTA < 41bp 1 0.435628536724046 1 0.402423739433289 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576618 chr2:232576621 stopgain 0.999 0 24 hm5C_associated_SNPs_23228 0 0 1 0 3 PTMA chr2:232576600 3'AG 232576600 Downstream 22bp
chr2 232576621 232576621 1 + G T HNSC 232576618 + 232576598 232576638 41 AGAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTA AGAATGAGGAAAATGGGGAGCAGTAGGCTGACAATGAGGTA < 41bp 1 0.435628536724046 1 0.402423739433289 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576618 chr2:232576621 stopgain 0.999 0 24 hm5C_associated_SNPs_23228 0 0 1 0 3 PTMA chr2:232576693 5'GT 232576693 Upstream 73bp
chr2 232576621 232576621 1 + G T HNSC 232576625 + 232576605 232576645 41 GGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAG GGAAAATGGGGAGCAGTAGGCTGACAATGAGGTAGACGAAG < 41bp 1 0.397026811274273 1 0.277562320232391 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232576625 chr2:232576621 stopgain 0.999 0 17 hm5C_associated_SNPs_23229 0 0 1 0 3 PTMA chr2:232576597 3'AG 232576597 Downstream 25bp
chr2 232576621 232576621 1 + G T HNSC 232576625 + 232576605 232576645 41 GGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAG GGAAAATGGGGAGCAGTAGGCTGACAATGAGGTAGACGAAG < 41bp 1 0.397026811274273 1 0.277562320232391 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232576625 chr2:232576621 stopgain 0.999 0 17 hm5C_associated_SNPs_23229 0 0 1 0 3 PTMA chr2:232576600 3'AG 232576600 Downstream 22bp
chr2 232576621 232576621 1 + G T HNSC 232576625 + 232576605 232576645 41 GGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAG GGAAAATGGGGAGCAGTAGGCTGACAATGAGGTAGACGAAG < 41bp 1 0.397026811274273 1 0.277562320232391 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232576625 chr2:232576621 stopgain 0.999 0 17 hm5C_associated_SNPs_23229 0 0 1 0 3 PTMA chr2:232576693 5'GT 232576693 Upstream 73bp
chr2 232576621 232576621 1 + G T HNSC 232576641 + 232576621 232576661 41 GAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGG TAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGG < 41bp 1 0.48602990541228 1 0.34844845533371 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232576641 chr2:232576621 stopgain 0.999 0 1 hm5C_associated_SNPs_23230 0 0 1 0 3 PTMA chr2:232576597 3'AG 232576597 Downstream 25bp
chr2 232576621 232576621 1 + G T HNSC 232576641 + 232576621 232576661 41 GAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGG TAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGG < 41bp 1 0.48602990541228 1 0.34844845533371 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232576641 chr2:232576621 stopgain 0.999 0 1 hm5C_associated_SNPs_23230 0 0 1 0 3 PTMA chr2:232576600 3'AG 232576600 Downstream 22bp
chr2 232576621 232576621 1 + G T HNSC 232576641 + 232576621 232576661 41 GAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGG TAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGG < 41bp 1 0.48602990541228 1 0.34844845533371 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232576641 chr2:232576621 stopgain 0.999 0 1 hm5C_associated_SNPs_23230 0 0 1 0 3 PTMA chr2:232576693 5'GT 232576693 Upstream 73bp
chr8 21960135 21960135 1 + G A HNSC 21960138 + 21960118 21960158 41 CGGGCCAGGCTCCTGGGGAGCAGTGAGTACCAAGGGTGCCA CGGGCCAGGCTCCTGGGAAGCAGTGAGTACCAAGGGTGCCA < 41bp 1 0.45905870109401 1 0.742861926555634 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21960138 chr8:21960135 nonsynonymous SNV 0.999 0 18 hm5C_associated_SNPs_23231 0 0 1 0 2 FAM160B2 chr8:21960039 3'AG 21960039 Downstream 97bp
chr8 21960135 21960135 1 + G A HNSC 21960138 + 21960118 21960158 41 CGGGCCAGGCTCCTGGGGAGCAGTGAGTACCAAGGGTGCCA CGGGCCAGGCTCCTGGGAAGCAGTGAGTACCAAGGGTGCCA < 41bp 1 0.45905870109401 1 0.742861926555634 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21960138 chr8:21960135 nonsynonymous SNV 0.999 0 18 hm5C_associated_SNPs_23231 0 0 1 0 2 FAM160B2 chr8:21960139 5'GT 21960139 Upstream 5bp
chr12 112590581 112590581 1 + G A HNSC 112590564 + 112590544 112590584 41 GCCTTCCAAGCAACAGGGAGCTGGGGATGCAGAAGAGGAAG GCCTTCCAAGCAACAGGGAGCTGGGGATGCAGAAGAGAAAG < 41bp 1 0.684524822584203 1 0.503264486789703 experiment 0.630950354831595 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112590564 chr12:112590581 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_23232 0 0 1 0 1 TRAFD1 chr12:112590539 3'AG 112590539 Downstream 43bp
chr11 605232 605232 1 + G A HNSC 605217 + 605197 605237 41 GTGTTGAAGCCAGTGGAGCCCTCTTTGGGGCTGCTGAGAGC GTGTTGAAGCCAGTGGAGCCCTCTTTGGGGCTGCTAAGAGC < 41bp 1 0.370452485249657 1 0.584210991859436 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:605217 chr11:605232 synonymous SNV . 0 36 hm5C_associated_SNPs_23234 0 0 1 0 1 PHRF1 chr11:605300 5'GT 605300 Upstream 69bp
chr7 142459656 142459656 1 + A G HNSC 142459652 + 142459632 142459672 41 CAGGTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGG CAGGTGAGACTGGGAGAGCACAACGTCGAAGTCCTGGAGGG < 41bp 1 0.788575580811012 1 0.344606995582581 experiment 0.422848838377976 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459652 chr7:142459656 nonsynonymous SNV 0.727 2 25 hm5C_associated_SNPs_23235 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 32bp
chr7 142459656 142459656 1 + A G HNSC 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTGAGACTGGGAGAGCACAACGTCGAAGTCCTGGAGGGGAA < 41bp 1 0.716403123749858 1 0.191617637872696 experiment 0.567193752500284 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459656 nonsynonymous SNV 0.727 2 22 hm5C_associated_SNPs_23236 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 32bp
chr7 142459656 142459656 1 + A G HNSC 142459658 + 142459638 142459678 41 AGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAATGA AGACTGGGAGAGCACAACGTCGAAGTCCTGGAGGGGAATGA < 41bp 1 0.697455264592244 1 0.352843046188354 experiment 0.605089470815512 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459658 chr7:142459656 nonsynonymous SNV 0.727 2 19 hm5C_associated_SNPs_23237 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 32bp
chr7 142459656 142459656 1 + A G HNSC 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCACAACGTCGAAGTCCTGGAGGGGAATGAGCAGTT < 41bp 1 0.583901006577735 1 0.543307542800903 experiment 0.83219798684453 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459656 nonsynonymous SNV 0.727 2 13 hm5C_associated_SNPs_23238 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 32bp
chr5 908535 908535 1 + C T HNSC 908541 + 908521 908561 41 TCAGATGCCATCCGCGTGGTCAATGCTGTCTTGACCCAAAT TCAGATGCCATCCGTGTGGTCAATGCTGTCTTGACCCAAAT < 41bp 1 0.369678838966784 1 0.154636085033417 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908541 chr5:908535 synonymous SNV . 0 15 hm5C_associated_SNPs_23239 0 0 1 0 2 TRIP13 chr5:908470 3'AG 908470 Downstream 66bp
chr5 908535 908535 1 + C T HNSC 908541 + 908521 908561 41 TCAGATGCCATCCGCGTGGTCAATGCTGTCTTGACCCAAAT TCAGATGCCATCCGTGTGGTCAATGCTGTCTTGACCCAAAT < 41bp 1 0.369678838966784 1 0.154636085033417 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908541 chr5:908535 synonymous SNV . 0 15 hm5C_associated_SNPs_23239 0 0 1 0 2 TRIP13 chr5:908576 5'GT 908576 Upstream 42bp
chr1 57161705 57161705 1 + A G HNSC 57161696 + 57161676 57161716 41 CCCTCCCATTTGATGATGAGCATGTACCTACGTTATTTAAG CCCTCCCATTTGATGATGAGCATGTACCTGCGTTATTTAAG < 41bp 1 0.164179092851371 1 0.0378483831882477 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57161696 chr1:57161705 nonsynonymous SNV 0.374 2 30 hm5C_associated_SNPs_23241 0 0 1 0 1 PRKAA2 chr1:57161608 3'AG 57161608 Downstream 98bp
chr11 118516501 118516501 1 + G A HNSC 118516515 + 118516495 118516535 41 GATGCTGAAAGAGGCTCATGCAGAGAAGAACCGGCTCATGG GATGCTAAAAGAGGCTCATGCAGAGAAGAACCGGCTCATGG < 41bp 1 0.646501349872367 1 0.76174533367157 experiment 0.706997300255266 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118516515 chr11:118516501 synonymous SNV . 0 7 hm5C_associated_SNPs_23242 0 0 1 0 1 PHLDB1 chr11:118516453 3'AG 118516453 Downstream 49bp
chr3 155628611 155628611 1 + G A HNSC 155628593 + 155628573 155628613 41 CTTTATGATATAGCTGGATGCAGTGGAACCTTCACCGTGCA CTTTATGATATAGCTGGATGCAGTGGAACCTTCACCGTACA < 41bp 1 0.443691528779464 1 0.470602810382843 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GMPS ENSG00000163655 CDS Human protein_coding chr3:155628593 chr3:155628611 synonymous SNV . 0 39 hm5C_associated_SNPs_23243 0 0 1 0 1 GMPS chr3:155628674 5'GT 155628674 Upstream 64bp
chr17 28961071 28961071 1 + G C HNSC 28961053 + 28961033 28961073 41 TATGACTATAAGAACAAACTCATCTTCGCAATATCTGTGAC TATGACTATAAGAACAAACTCATCTTCGCAATATCTGTCAC < 41bp 1 0.0751458585615982 1 0.100877463817596 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC107133515 ENSG00000214719;ENSG00000250462 ncRNA_exonic Human other chr17:28961053 chr17:28961071 . . 0 39 hm5C_associated_SNPs_23244 0 0 1 1 1 LOC107133515 chr17:28961012 3'AG 28961012 Downstream 60bp
chr4 174242759 174242759 1 + C T HNSC 174242739 + 174242719 174242759 41 TGTGTTTTCCAGAACCTGCACAGATTTACTCATATTCCTTC TGTGTTTTCCAGAACCTGCACAGATTTACTCATATTCCTTT < 41bp 1 0.251930322280083 1 0.120232582092285 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT7 ENSG00000109586 CDS Human protein_coding chr4:174242739 chr4:174242759 nonsynonymous SNV 0.998 1 41 hm5C_associated_SNPs_23245 0 0 1 0 1 GALNT7 chr4:174242731 3'AG 174242731 Downstream 29bp
chr1 223943283 223943283 1 + C G HNSC 223943279 + 223943259 223943299 41 TGCACCTTCCTGGTGGGGCTCATTCAGAAGCACCGACGGCG TGCACCTTCCTGGTGGGGCTCATTGAGAAGCACCGACGGCG < 41bp 1 0.21416597140712 1 0.096655011177063 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943279 chr1:223943283 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_23247 0 0 1 0 1 CAPN2 chr1:223943351 5'GT 223943351 Upstream 69bp
chr1 223943283 223943283 1 + C G HNSC 223943292 + 223943272 223943312 41 TGGGGCTCATTCAGAAGCACCGACGGCGGCAGAGGAAGATG TGGGGCTCATTGAGAAGCACCGACGGCGGCAGAGGAAGATG < 41bp 1 0.669611810420313 1 0.369115471839905 experiment 0.660776379159373 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943292 chr1:223943283 nonsynonymous SNV 0.998 5 12 hm5C_associated_SNPs_23248 0 0 1 0 1 CAPN2 chr1:223943351 5'GT 223943351 Upstream 69bp
chr1 223943283 223943283 1 + C G HNSC 223943301 + 223943281 223943321 41 TTCAGAAGCACCGACGGCGGCAGAGGAAGATGGGCGAGGAC TTGAGAAGCACCGACGGCGGCAGAGGAAGATGGGCGAGGAC < 41bp 1 0.72485044351297 1 0.601225972175598 experiment 0.550299112974059 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943301 chr1:223943283 nonsynonymous SNV 0.998 5 3 hm5C_associated_SNPs_23249 0 0 1 0 1 CAPN2 chr1:223943351 5'GT 223943351 Upstream 69bp
chr2 217364725 217364725 1 + G C HNSC 217364705 + 217364685 217364725 41 GACGAGCTGTGGGGATCTGGCACTGTGGTTCCTGCATGAAG GACGAGCTGTGGGGATCTGGCACTGTGGTTCCTGCATGAAC < 41bp 1 0.69107932416575 1 0.189842402935028 experiment 0.6178413516685 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364705 chr2:217364725 nonsynonymous SNV 0.903 1 41 hm5C_associated_SNPs_23253 0 0 1 0 2 RPL37A chr2:217364672 3'AG 217364672 Downstream 54bp
chr2 217364725 217364725 1 + G C HNSC 217364705 + 217364685 217364725 41 GACGAGCTGTGGGGATCTGGCACTGTGGTTCCTGCATGAAG GACGAGCTGTGGGGATCTGGCACTGTGGTTCCTGCATGAAC < 41bp 1 0.69107932416575 1 0.189842402935028 experiment 0.6178413516685 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364705 chr2:217364725 nonsynonymous SNV 0.903 1 41 hm5C_associated_SNPs_23253 0 0 1 0 2 RPL37A chr2:217364754 5'GT 217364754 Upstream 30bp
chr2 217364725 217364725 1 + G C HNSC 217364733 + 217364713 217364753 41 TTCCTGCATGAAGACAGTGGCTGGCGGTGCCTGGACGTACA TTCCTGCATGAACACAGTGGCTGGCGGTGCCTGGACGTACA < 41bp 1 0.700842859313601 1 0.191708832979202 experiment 0.598314281372799 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364733 chr2:217364725 nonsynonymous SNV 0.903 1 13 hm5C_associated_SNPs_23254 0 0 1 0 2 RPL37A chr2:217364672 3'AG 217364672 Downstream 54bp
chr2 217364725 217364725 1 + G C HNSC 217364733 + 217364713 217364753 41 TTCCTGCATGAAGACAGTGGCTGGCGGTGCCTGGACGTACA TTCCTGCATGAACACAGTGGCTGGCGGTGCCTGGACGTACA < 41bp 1 0.700842859313601 1 0.191708832979202 experiment 0.598314281372799 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364733 chr2:217364725 nonsynonymous SNV 0.903 1 13 hm5C_associated_SNPs_23254 0 0 1 0 2 RPL37A chr2:217364754 5'GT 217364754 Upstream 30bp
chr2 217364725 217364725 1 + G C HNSC 217364737 + 217364717 217364757 41 TGCATGAAGACAGTGGCTGGCGGTGCCTGGACGTACAAGTG TGCATGAACACAGTGGCTGGCGGTGCCTGGACGTACAAGTG < 41bp 1 0.602606834807942 1 0.488430768251419 experiment 0.794786330384116 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364737 chr2:217364725 nonsynonymous SNV 0.903 1 9 hm5C_associated_SNPs_23255 0 0 1 0 2 RPL37A chr2:217364672 3'AG 217364672 Downstream 54bp
chr2 217364725 217364725 1 + G C HNSC 217364737 + 217364717 217364757 41 TGCATGAAGACAGTGGCTGGCGGTGCCTGGACGTACAAGTG TGCATGAACACAGTGGCTGGCGGTGCCTGGACGTACAAGTG < 41bp 1 0.602606834807942 1 0.488430768251419 experiment 0.794786330384116 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364737 chr2:217364725 nonsynonymous SNV 0.903 1 9 hm5C_associated_SNPs_23255 0 0 1 0 2 RPL37A chr2:217364754 5'GT 217364754 Upstream 30bp
chr2 217364725 217364725 1 + G C HNSC 217364742 + 217364722 217364762 41 GAAGACAGTGGCTGGCGGTGCCTGGACGTACAAGTGAGTCT GAACACAGTGGCTGGCGGTGCCTGGACGTACAAGTGAGTCT < 41bp 1 0.33982162459807 1 0.360063135623932 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364742 chr2:217364725 nonsynonymous SNV 0.903 1 4 hm5C_associated_SNPs_23256 0 0 1 0 2 RPL37A chr2:217364672 3'AG 217364672 Downstream 54bp
chr2 217364725 217364725 1 + G C HNSC 217364742 + 217364722 217364762 41 GAAGACAGTGGCTGGCGGTGCCTGGACGTACAAGTGAGTCT GAACACAGTGGCTGGCGGTGCCTGGACGTACAAGTGAGTCT < 41bp 1 0.33982162459807 1 0.360063135623932 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364742 chr2:217364725 nonsynonymous SNV 0.903 1 4 hm5C_associated_SNPs_23256 0 0 1 0 2 RPL37A chr2:217364754 5'GT 217364754 Upstream 30bp
chr2 136537915 136537915 1 + G A HNSC 136537910 + 136537890 136537930 41 GACTTCAGTGAGAGTAACATCGTCAGAACCCCCAAACCCTG GACTTCAGTGAGAGTAACATCGTCAAAACCCCCAAACCCTG < 41bp 1 0.76604792636791 1 0.691784977912903 experiment 0.46790414726418 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBXN4 ENSG00000144224 CDS Human protein_coding chr2:136537910 chr2:136537915 nonsynonymous SNV 0.074 1 26 hm5C_associated_SNPs_23257 0 0 1 0 1 UBXN4 chr2:136537955 5'GT 136537955 Upstream 41bp
chr1 156142792 156142792 1 + G A HNSC 156142796 + 156142776 156142816 41 CTTGTCATGTACCTGGGAACCAGTGAGTAAAGAGTTCCGGG CTTGTCATGTACCTGGAAACCAGTGAGTAAAGAGTTCCGGG < 41bp 1 0.578219290549718 1 0.700400471687317 experiment 0.843561418900563 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156142796 chr1:156142792 nonsynonymous SNV 0.975 4 17 hm5C_associated_SNPs_23258 0 0 0 0 1 SEMA4A chr1:156142797 5'GT 156142797 Upstream 6bp
chr19 50002790 50002790 1 + C T HNSC 50002809 + 50002789 50002829 41 TCGTCACAGTGGGCGAGTGCCGGCCTCTGAGCAAGACAGTG TTGTCACAGTGGGCGAGTGCCGGCCTCTGAGCAAGACAGTG < 41bp 1 0.545073248984029 1 0.426436901092529 experiment 0.909853502031942 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS11 ENSG00000142534 CDS Human protein_coding chr19:50002809 chr19:50002790 synonymous SNV . 0 2 hm5C_associated_SNPs_23261 0 0 1 0 1 RPS11 chr19:50002769 3'AG 50002769 Downstream 22bp
chr2 153494169 153494169 1 + G A HNSC 153494168 + 153494148 153494188 41 TCTTCTTTCCTGTCTTTGTCCGGTTTGTGAAAGCATATAAG TCTTCTTTCCTGTCTTTGTCCAGTTTGTGAAAGCATATAAG < 41bp 1 0.144728666891662 1 0.170269906520844 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153494168 chr2:153494169 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_23262 0 0 0 0 2 FMNL2 chr2:153494087 3'AG 153494087 Downstream 83bp
chr2 153494169 153494169 1 + G A HNSC 153494168 + 153494148 153494188 41 TCTTCTTTCCTGTCTTTGTCCGGTTTGTGAAAGCATATAAG TCTTCTTTCCTGTCTTTGTCCAGTTTGTGAAAGCATATAAG < 41bp 1 0.144728666891662 1 0.170269906520844 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153494168 chr2:153494169 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_23262 0 0 0 0 2 FMNL2 chr2:153494188 5'GT 153494188 Upstream 20bp
chr19 45797632 45797632 1 + C T HNSC 45797648 + 45797628 45797668 41 ATGACCCGCAGAAACACCTACGTTTGCACAGAACGCCCGGG ATGATCCGCAGAAACACCTACGTTTGCACAGAACGCCCGGG < 41bp 1 0.047475198875157 1 0.0609906911849976 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45797648 chr19:45797632 nonsynonymous SNV 0.999 4 5 hm5C_associated_SNPs_23263 0 0 1 0 2 MARK4 chr19:45797607 3'AG 45797607 Downstream 26bp
chr19 45797632 45797632 1 + C T HNSC 45797648 + 45797628 45797668 41 ATGACCCGCAGAAACACCTACGTTTGCACAGAACGCCCGGG ATGATCCGCAGAAACACCTACGTTTGCACAGAACGCCCGGG < 41bp 1 0.047475198875157 1 0.0609906911849976 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45797648 chr19:45797632 nonsynonymous SNV 0.999 4 5 hm5C_associated_SNPs_23263 0 0 1 0 2 MARK4 chr19:45797710 5'GT 45797710 Upstream 79bp
chr6 31598918 31598918 1 + G A HNSC 31598935 + 31598915 31598955 41 GGAGCGAGACTCCTCCAGTACCTCCCCCACCACCCTATCTG GGAACGAGACTCCTCCAGTACCTCCCCCACCACCCTATCTG < 41bp 1 0.100419766401215 1 0.0350587069988251 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31598935 chr6:31598918 nonsynonymous SNV 0.992 2 4 hm5C_associated_SNPs_23266 0 0 1 0 1 PRRC2A chr6:31598916 3'AG 31598916 Downstream 3bp
chr19 11141507 11141507 1 + G T HNSC 11141506 + 11141486 11141526 41 AGCACCCGGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGGC AGCACCCGGGCTGGGGGGCTCTGCCTGAACCTCCAGTCGGC < 41bp 1 0.428207999637468 1 0.292483627796173 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141506 chr19:11141507 nonsynonymous SNV 0.960 5 22 hm5C_associated_SNPs_23267 0 0 1 0 1 SMARCA4 chr19:11141569 5'GT 11141569 Upstream 63bp
chr10 103291078 103291078 1 + A T HNSC 103291084 + 103291064 103291104 41 TATCCTAAAATTATACAAGACATTGAGGTAAGAATCTATGT TATCCTAAAATTATTCAAGACATTGAGGTAAGAATCTATGT < 41bp 1 0.0529305546808117 1 0.0465764999389648 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BTRC ENSG00000166167 CDS Human protein_coding chr10:103291084 chr10:103291078 synonymous SNV . 0 15 hm5C_associated_SNPs_23268 0 0 1 0 2 BTRC chr10:103290994 3'AG 103290994 Downstream 85bp
chr10 103291078 103291078 1 + A T HNSC 103291084 + 103291064 103291104 41 TATCCTAAAATTATACAAGACATTGAGGTAAGAATCTATGT TATCCTAAAATTATTCAAGACATTGAGGTAAGAATCTATGT < 41bp 1 0.0529305546808117 1 0.0465764999389648 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BTRC ENSG00000166167 CDS Human protein_coding chr10:103291084 chr10:103291078 synonymous SNV . 0 15 hm5C_associated_SNPs_23268 0 0 1 0 2 BTRC chr10:103291090 5'GT 103291090 Upstream 13bp
chr3 108353773 108353773 1 + G T HNSC 108353763 + 108353743 108353783 41 AAAGTTGCTGTGTTTATTTCCATAAAATTTGCTGGAAAAAG AAAGTTGCTGTGTTTATTTCCATAAAATTTTCTGGAAAAAG < 41bp 1 0.142200911452504 1 0.452269107103348 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108353763 chr3:108353773 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_23269 0 0 1 0 1 DZIP3 chr3:108353819 5'GT 108353819 Upstream 47bp
chr19 11105592 11105592 1 + C A HNSC 11105582 + 11105562 11105602 41 TCACAGGCAAAATCCAGAAGCTGACCAAGGCAGTGGCCACG TCACAGGCAAAATCCAGAAGCTGACCAAGGAAGTGGCCACG < 41bp 1 0.153027378129113 1 0.210264325141907 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11105582 chr19:11105592 nonsynonymous SNV 0.992 4 31 hm5C_associated_SNPs_23270 0 0 1 0 2 SMARCA4 chr19:11105504 3'AG 11105504 Downstream 89bp
chr19 11105592 11105592 1 + C A HNSC 11105582 + 11105562 11105602 41 TCACAGGCAAAATCCAGAAGCTGACCAAGGCAGTGGCCACG TCACAGGCAAAATCCAGAAGCTGACCAAGGAAGTGGCCACG < 41bp 1 0.153027378129113 1 0.210264325141907 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11105582 chr19:11105592 nonsynonymous SNV 0.992 4 31 hm5C_associated_SNPs_23270 0 0 1 0 2 SMARCA4 chr19:11105677 5'GT 11105677 Upstream 86bp
chr14 65194605 65194605 1 + C T HNSC 65194597 + 65194577 65194617 41 CCCGTTCAACAGCCGGGCAGCGGCAGGGCCTGCACACCACA CCCGTTCAACAGCCGGGCAGCGGCAGGGTCTGCACACCACA < 41bp 1 0.662913071993579 1 0.728903353214264 experiment 0.674173856012843 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65194597 chr14:65194605 nonsynonymous SNV 0.000 0 29 hm5C_associated_SNPs_23271 0 0 0 0 1 PLEKHG3 chr14:65194700 5'GT 65194700 Upstream 96bp
chrX 135106627 135106627 1 + C T HNSC 135106613 + 135106593 135106633 41 TGGGTATTTGGTGGTGGCACCACTGCAATGCTGTCATGCTT TGGGTATTTGGTGGTGGCACCACTGCAATGCTGTTATGCTT < 41bp 1 0.305103006555702 1 0.741466403007507 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135106613 chrX:135106627 nonsynonymous SNV 0.998 2 35 hm5C_associated_SNPs_23274 0 0 1 0 1 SLC9A6 chrX:135106642 5'GT 135106642 Upstream 16bp
chr17 1747901 1747901 1 + C T HNSC 1747884 + 1747864 1747904 41 GTTTTCAGCTTTCATGTTGGCGACACAGTTGAACCCTCTCG GTTTTCAGCTTTCATGTTGGCGACACAGTTGAACCCTTTCG < 41bp 1 0.587113998255689 1 0.174499571323395 experiment 0.825772003488623 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPA1 ENSG00000132383 CDS Human protein_coding chr17:1747884 chr17:1747901 nonsynonymous SNV 0.071 4 38 hm5C_associated_SNPs_23276 0 0 1 0 2 RPA1 chr17:1747872 3'AG 1747872 Downstream 30bp
chr17 1747901 1747901 1 + C T HNSC 1747884 + 1747864 1747904 41 GTTTTCAGCTTTCATGTTGGCGACACAGTTGAACCCTCTCG GTTTTCAGCTTTCATGTTGGCGACACAGTTGAACCCTTTCG < 41bp 1 0.587113998255689 1 0.174499571323395 experiment 0.825772003488623 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPA1 ENSG00000132383 CDS Human protein_coding chr17:1747884 chr17:1747901 nonsynonymous SNV 0.071 4 38 hm5C_associated_SNPs_23276 0 0 1 0 2 RPA1 chr17:1747980 5'GT 1747980 Upstream 80bp
chr14 96998720 96998720 1 + C T HNSC 96998728 + 96998708 96998748 41 CATTGACAACTTCAGGTTAACTCTGAGAGCTATCAAACTAT CATTGACAACTTTAGGTTAACTCTGAGAGCTATCAAACTAT < 41bp 1 0.507098067711416 1 0.0590348541736603 experiment 0.985803864577169 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:96998728 chr14:96998720 synonymous SNV . 0 13 hm5C_associated_SNPs_23278 0 0 1 0 2 PAPOLA chr14:96998668 3'AG 96998668 Downstream 53bp
chr14 96998720 96998720 1 + C T HNSC 96998728 + 96998708 96998748 41 CATTGACAACTTCAGGTTAACTCTGAGAGCTATCAAACTAT CATTGACAACTTTAGGTTAACTCTGAGAGCTATCAAACTAT < 41bp 1 0.507098067711416 1 0.0590348541736603 experiment 0.985803864577169 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:96998728 chr14:96998720 synonymous SNV . 0 13 hm5C_associated_SNPs_23278 0 0 1 0 2 PAPOLA chr14:96998757 5'GT 96998757 Upstream 38bp
chr1 162745470 162745470 1 + A G HNSC 162745469 + 162745449 162745489 41 TTTCTTAAGGAGATAAAGATCATGTCTCGGCTCAAGGACCC TTTCTTAAGGAGATAAAGATCGTGTCTCGGCTCAAGGACCC < 41bp 1 0.327055424894335 1 0.138633400201797 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162745469 chr1:162745470 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_23279 0 0 0 0 1 DDR2 chr1:162745442 3'AG 162745442 Downstream 29bp
chr7 142561964 142561964 1 + G A HNSC 142561972 + 142561952 142561992 41 TACCGTCAGGCTGAGGAGCCCGACAGCCCTGACAGCGTTTC TACCGTCAGGCTAAGGAGCCCGACAGCCCTGACAGCGTTTC < 41bp 1 0.645316976080055 1 0.118663728237152 experiment 0.70936604783989 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142561972 chr7:142561964 nonsynonymous SNV 0.978 1 13 hm5C_associated_SNPs_23280 0 0 0 0 1 EPHB6 chr7:142562020 5'GT 142562020 Upstream 57bp
chr8 48885504 48885504 1 + G C HNSC 48885502 + 48885482 48885522 41 ACCTGGTCGCACTGTACTACCAGAGCGAGGAGCAGGCAGAG ACCTGGTCGCACTGTACTACCACAGCGAGGAGCAGGCAGAG < 41bp 1 0.686983342341811 1 0.095167487859726 experiment 0.626033315316379 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48885502 chr8:48885504 nonsynonymous SNV 0.966 2 23 hm5C_associated_SNPs_23281 0 0 1 0 1 MCM4 chr8:48885417 3'AG 48885417 Downstream 88bp
chr10 75525644 75525644 1 + G T HNSC 75525655 + 75525635 75525675 41 GGCTCTTATGAATTCTTGGCCACTGTAGATTACTGCAAGGT GGCTCTTATTAATTCTTGGCCACTGTAGATTACTGCAAGGT < 41bp 1 0.21538758359059 1 0.10268434882164 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75525655 chr10:75525644 stopgain 1.000 1 10 hm5C_associated_SNPs_23283 0 0 1 0 2 SEC24C chr10:75525558 3'AG 75525558 Downstream 87bp
chr10 75525644 75525644 1 + G T HNSC 75525655 + 75525635 75525675 41 GGCTCTTATGAATTCTTGGCCACTGTAGATTACTGCAAGGT GGCTCTTATTAATTCTTGGCCACTGTAGATTACTGCAAGGT < 41bp 1 0.21538758359059 1 0.10268434882164 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75525655 chr10:75525644 stopgain 1.000 1 10 hm5C_associated_SNPs_23283 0 0 1 0 2 SEC24C chr10:75525673 5'GT 75525673 Upstream 30bp
chr3 44903512 44903512 1 + G C HNSC 44903511 + 44903491 44903531 41 TCCGCACCTCCAGGCGGGTGCGATGCGGCGCCGCTTTTGGG TCCGCACCTCCAGGCGGGTGCCATGCGGCGCCGCTTTTGGG < 41bp 1 0.248206162067397 1 0.071842223405838 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM42 ENSG00000169964 CDS Human protein_coding chr3:44903511 chr3:44903512 synonymous SNV . 0 22 hm5C_associated_SNPs_23284 0 0 0 0 1 TMEM42 chr3:44903608 5'GT 44903608 Upstream 97bp
chr7 91714839 91714839 1 + A T HNSC 91714852 + 91714832 91714872 41 TGAAGGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATA TGAAGGCTTGCAGGTGCTTTCTCTCACTGAGTCTCCCTATA < 41bp 1 0.251305532323452 1 0.0358345210552216 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714852 chr7:91714839 nonsynonymous SNV 0.997 1 8 hm5C_associated_SNPs_23285 0 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 31bp
chr7 91714839 91714839 1 + A T HNSC 91714856 + 91714836 91714876 41 GGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATAGTGA GGCTTGCAGGTGCTTTCTCTCACTGAGTCTCCCTATAGTGA < 41bp 1 0.411342547327187 1 0.0955713987350464 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714856 chr7:91714839 nonsynonymous SNV 0.997 1 4 hm5C_associated_SNPs_23286 0 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 31bp
chr21 38117419 38117419 1 + C T HNSC 38117415 + 38117395 38117435 41 CCGGCGAACACTGCTAGGCACAGCCTGGTGCCAAGCTACGA CCGGCGAACACTGCTAGGCACAGCTTGGTGCCAAGCTACGA < 41bp 1 0.344496288990516 1 0.113015651702881 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIM2 ENSG00000159263 CDS Human protein_coding chr21:38117415 chr21:38117419 synonymous SNV . 0 25 hm5C_associated_SNPs_23288 0 0 0 0 1 SIM2 chr21:38117437 5'GT 38117437 Upstream 19bp
chr10 12191690 12191690 1 + C T HNSC 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT AATCATTGAAGTTGGAGATACACTGAAAGATAGAGCTTTAT < 41bp 1 0.30631299639295 1 0.0715384483337402 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191690 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_23291 0 0 1 4 2 SEC61A2 chr10:12191594 3'AG 12191594 Downstream 97bp
chr10 12191690 12191690 1 + C T HNSC 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT AATCATTGAAGTTGGAGATACACTGAAAGATAGAGCTTTAT < 41bp 1 0.30631299639295 1 0.0715384483337402 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191690 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_23291 0 0 1 4 2 SEC61A2 chr10:12191725 5'GT 12191725 Upstream 36bp
chr7 128407640 128407640 1 + C T HNSC 128407641 + 128407621 128407661 41 AAGAGACCAAAGACTGGATCCTTCCCTCAGACTATGATCAT AAGAGACCAAAGACTGGATTCTTCCCTCAGACTATGATCAT < 41bp 1 0.195407061153699 1 0.0385686755180359 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CALU ENSG00000128595 CDS Human protein_coding chr7:128407641 chr7:128407640 synonymous SNV . 0 20 hm5C_associated_SNPs_23293 0 0 1 0 1 CALU chr7:128407709 5'GT 128407709 Upstream 70bp
chr7 128407640 128407640 1 + C T HNSC 128407644 + 128407624 128407664 41 AGACCAAAGACTGGATCCTTCCCTCAGACTATGATCATGCA AGACCAAAGACTGGATTCTTCCCTCAGACTATGATCATGCA < 41bp 1 0.146279453834625 1 0.22507432103157 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CALU ENSG00000128595 CDS Human protein_coding chr7:128407644 chr7:128407640 synonymous SNV . 0 17 hm5C_associated_SNPs_23294 0 0 1 0 1 CALU chr7:128407709 5'GT 128407709 Upstream 70bp
chr1 249210815 249210815 1 + G A HNSC 249210825 + 249210805 249210845 41 GTCATTGCTGGGAGAGGTATCCACTCAAAGGTGAAGTCTGC GTCATTGCTGAGAGAGGTATCCACTCAAAGGTGAAGTCTGC < 41bp 1 0.185693966868236 1 0.245109289884567 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249210825 chr1:249210815 nonsynonymous SNV 0.002 0 11 hm5C_associated_SNPs_23295 0 0 1 0 1 PGBD2 chr1:249210801 3'AG 249210801 Downstream 15bp
chr14 102502959 102502959 1 + G A HNSC 102502965 + 102502945 102502985 41 GTGCACTGAGATTCGGTAACCCCCTTCTGGTCCAGGTTGGT GTGCACTGAGATTCAGTAACCCCCTTCTGGTCCAGGTTGGT < 41bp 1 0.0371480911024584 1 0.0274159908294678 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102502965 chr14:102502959 nonsynonymous SNV 0.050 4 15 hm5C_associated_SNPs_23297 0 0 1 0 1 DYNC1H1 chr14:102502979 5'GT 102502979 Upstream 21bp
chr14 102502959 102502959 1 + G A HNSC 102502967 + 102502947 102502987 41 GCACTGAGATTCGGTAACCCCCTTCTGGTCCAGGTTGGTGT GCACTGAGATTCAGTAACCCCCTTCTGGTCCAGGTTGGTGT < 41bp 1 0.00807271974962705 1 0.0250576138496399 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102502967 chr14:102502959 nonsynonymous SNV 0.050 4 13 hm5C_associated_SNPs_23298 0 0 1 0 1 DYNC1H1 chr14:102502979 5'GT 102502979 Upstream 21bp
chr7 2613121 2613121 1 + A G HNSC 2613101 + 2613081 2613121 41 GAAAAAGAAGATATGTATGACGAGATTATTGAGTTAAAGAA GAAAAAGAAGATATGTATGACGAGATTATTGAGTTAAAGAG < 41bp 1 0.485554879832475 1 0.560850560665131 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IQCE ENSG00000106012 CDS Human protein_coding chr7:2613101 chr7:2613121 nonsynonymous SNV 0.999 3 41 hm5C_associated_SNPs_23304 0 0 0 0 2 IQCE chr7:2613052 3'AG 2613052 Downstream 70bp
chr7 2613121 2613121 1 + A G HNSC 2613101 + 2613081 2613121 41 GAAAAAGAAGATATGTATGACGAGATTATTGAGTTAAAGAA GAAAAAGAAGATATGTATGACGAGATTATTGAGTTAAAGAG < 41bp 1 0.485554879832475 1 0.560850560665131 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IQCE ENSG00000106012 CDS Human protein_coding chr7:2613101 chr7:2613121 nonsynonymous SNV 0.999 3 41 hm5C_associated_SNPs_23304 0 0 0 0 2 IQCE chr7:2613122 5'GT 2613122 Upstream 2bp
chr11 61897977 61897977 1 + C T HNSC 61897996 + 61897976 61898016 41 CCAAACAGGAAAGTGTTGTCCGCAGGGCGAGCAGAAGGCTT CTAAACAGGAAAGTGTTGTCCGCAGGGCGAGCAGAAGGCTT < 41bp 1 0.531207612142431 1 0.559327065944672 experiment 0.937584775715138 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61897996 chr11:61897977 synonymous SNV . 0 2 hm5C_associated_SNPs_23312 0 0 1 0 1 INCENP chr11:61898062 5'GT 61898062 Upstream 86bp
chr16 70575702 70575702 1 + G A HNSC 70575721 + 70575701 70575741 41 TGAGTTGGACAGCCTCTCTCCCATTCTGTTTTGCCAGGTTG TAAGTTGGACAGCCTCTCTCCCATTCTGTTTTGCCAGGTTG < 41bp 1 0.0309589560716515 1 0.0712500214576721 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70575721 chr16:70575702 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_23315 0 0 1 0 1 SF3B3 chr16:70575737 5'GT 70575737 Upstream 36bp
chr9 108377582 108377582 1 + G A HNSC 108377587 + 108377567 108377607 41 TGATGATAACACTGTGGAAGCTGTGGCCTTTCGGAAGAGTG TGATGATAACACTGTAGAAGCTGTGGCCTTTCGGAAGAGTG < 41bp 1 0.260881809737653 1 0.14705491065979 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FKTN ENSG00000106692 CDS Human protein_coding chr9:108377587 chr9:108377582 synonymous SNV . 0 16 hm5C_associated_SNPs_23316 0 0 1 0 1 FKTN chr9:108377559 3'AG 108377559 Downstream 24bp
chr16 68104954 68104954 1 + C G HNSC 68104973 + 68104953 68104993 41 TCTTCCTCAAGGAGGGTCTGCGGCCCCTGGAGGAGGTCATG TGTTCCTCAAGGAGGGTCTGCGGCCCCTGGAGGAGGTCATG < 41bp 1 0.197199004356714 1 0.427280247211456 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68104973 chr16:68104954 nonsynonymous SNV 0.989 2 2 hm5C_associated_SNPs_23317 0 0 1 0 1 DUS2 chr16:68105011 5'GT 68105011 Upstream 58bp
chr1 82372826 82372826 1 + G T HNSC 82372824 + 82372804 82372844 41 TTGAGAGCGCTAACTATGGTCGGACGGATGACAAGATTTGT TTGAGAGCGCTAACTATGGTCGTACGGATGACAAGATTTGT < 41bp 1 0.0919246819370884 1 0.136998176574707 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRL2 ENSG00000117114 CDS Human protein_coding chr1:82372824 chr1:82372826 synonymous SNV . 0 23 hm5C_associated_SNPs_23318 0 0 1 0 1 ADGRL2 chr1:82372915 5'GT 82372915 Upstream 90bp
chr13 76393647 76393647 1 + C T HNSC 76393641 + 76393621 76393661 41 TGAGAAGTCTAAGAGAAGCTCTAAGACGTTTAAGGAAATGC TGAGAAGTCTAAGAGAAGCTCTAAGATGTTTAAGGAAATGC < 41bp 1 0.334199684724297 1 0.195094674825668 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76393641 chr13:76393647 nonsynonymous SNV 0.989 4 27 hm5C_associated_SNPs_23323 0 0 1 0 1 LMO7 chr13:76393671 5'GT 76393671 Upstream 25bp
chr12 113872019 113872019 1 + C A HNSC 113872014 + 113871994 113872034 41 AGAATGTCCCCCCGTTTGACCACCCCCTAATATGGTAAGGC AGAATGTCCCCCCGTTTGACCACCCACTAATATGGTAAGGC < 41bp 1 0.177413045636692 1 0.0879810154438019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SDSL ENSG00000139410 CDS Human protein_coding chr12:113872014 chr12:113872019 synonymous SNV . 0 26 hm5C_associated_SNPs_23324 0 0 0 0 2 SDSL chr12:113871939 3'AG 113871939 Downstream 81bp
chr12 113872019 113872019 1 + C A HNSC 113872014 + 113871994 113872034 41 AGAATGTCCCCCCGTTTGACCACCCCCTAATATGGTAAGGC AGAATGTCCCCCCGTTTGACCACCCACTAATATGGTAAGGC < 41bp 1 0.177413045636692 1 0.0879810154438019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SDSL ENSG00000139410 CDS Human protein_coding chr12:113872014 chr12:113872019 synonymous SNV . 0 26 hm5C_associated_SNPs_23324 0 0 0 0 2 SDSL chr12:113872027 5'GT 113872027 Upstream 9bp
chr6 43096998 43096998 1 + C T HNSC 43096986 + 43096966 43097006 41 GAAGCCCGCAGTGCCAACGCCTCCTTCAACATCAAATGTGA GAAGCCCGCAGTGCCAACGCCTCCTTCAACATTAAATGTGA < 41bp 1 0.172811435163159 1 0.769067049026489 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTK7 ENSG00000112655 CDS Human protein_coding chr6:43096986 chr6:43096998 synonymous SNV . 0 33 hm5C_associated_SNPs_23326 0 0 1 0 1 PTK7 chr6:43097002 5'GT 43097002 Upstream 5bp
chr19 4950635 4950635 1 + C G HNSC 4950627 + 4950607 4950647 41 CTGACTCTCCCTGCAGGGCGCTGGCTCTCAACTGCTTTGCT CTGACTCTCCCTGCAGGGCGCTGGCTCTGAACTGCTTTGCT < 41bp 1 0.222562518219115 1 0.0919357538223267 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4950627 chr19:4950635 . . 0 29 hm5C_associated_SNPs_23327 0 0 0 0 1 UHRF1 chr19:4950623 3'AG 4950623 Downstream 13bp
chr19 4950635 4950635 1 + C G HNSC 4950631 + 4950611 4950651 41 CTCTCCCTGCAGGGCGCTGGCTCTCAACTGCTTTGCTCCCA CTCTCCCTGCAGGGCGCTGGCTCTGAACTGCTTTGCTCCCA < 41bp 1 0.438390598136412 1 0.264455199241638 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4950631 chr19:4950635 . . 0 25 hm5C_associated_SNPs_23328 0 0 0 0 1 UHRF1 chr19:4950623 3'AG 4950623 Downstream 13bp
chr15 40862066 40862066 1 + A G HNSC 40862046 + 40862026 40862066 41 CACGTCTTCAGTACCGAGTTCCGAGCTCAGCCCCTGGCCTA CACGTCTTCAGTACCGAGTTCCGAGCTCAGCCCCTGGCCTG < 41bp 1 0.353320693233818 1 0.475253641605377 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPUSD2 ENSG00000166133 CDS Human protein_coding chr15:40862046 chr15:40862066 nonsynonymous SNV 0.951 4 41 hm5C_associated_SNPs_23331 0 0 0 0 1 RPUSD2 chr15:40862142 5'GT 40862142 Upstream 77bp
chr15 40862066 40862066 1 + A G HNSC 40862047 + 40862027 40862067 41 ACGTCTTCAGTACCGAGTTCCGAGCTCAGCCCCTGGCCTAC ACGTCTTCAGTACCGAGTTCCGAGCTCAGCCCCTGGCCTGC < 41bp 1 0.497005946165495 1 0.872754991054535 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPUSD2 ENSG00000166133 CDS Human protein_coding chr15:40862047 chr15:40862066 nonsynonymous SNV 0.951 4 40 hm5C_associated_SNPs_23332 0 0 0 0 1 RPUSD2 chr15:40862142 5'GT 40862142 Upstream 77bp
chr16 85687969 85687969 1 + C T HNSC 85687966 + 85687946 85687986 41 TCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGC TCAGGAGAAGGCAGGGGGACCAGTCATCCCCTCGCACCTGC < 41bp 1 0.341751225580333 1 0.321201056241989 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85687966 chr16:85687969 nonsynonymous SNV 0.932 1 24 hm5C_associated_SNPs_23333 0 0 1 0 2 GSE1 chr16:85687884 3'AG 85687884 Downstream 86bp
chr16 85687969 85687969 1 + C T HNSC 85687966 + 85687946 85687986 41 TCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGC TCAGGAGAAGGCAGGGGGACCAGTCATCCCCTCGCACCTGC < 41bp 1 0.341751225580333 1 0.321201056241989 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85687966 chr16:85687969 nonsynonymous SNV 0.932 1 24 hm5C_associated_SNPs_23333 0 0 1 0 2 GSE1 chr16:85688056 5'GT 85688056 Upstream 88bp
chr12 57604642 57604642 1 + T C HNSC 57604652 + 57604632 57604672 41 CCCGGCTTCCTGGGCGACCGCTGCCAGTACCGTGAGTGAGC CCCGGCTTCCCGGGCGACCGCTGCCAGTACCGTGAGTGAGC < 41bp 1 0.165460235894903 1 0.276858448982239 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57604652 chr12:57604642 nonsynonymous SNV 0.993 0 11 hm5C_associated_SNPs_23334 0 0 1 0 1 LRP1 chr12:57604662 5'GT 57604662 Upstream 21bp
chr16 85687968 85687968 1 + G T HNSC 85687966 + 85687946 85687986 41 TCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGC TCAGGAGAAGGCAGGGGGACCATCCATCCCCTCGCACCTGC < 41bp 1 0.22424216135692 1 0.227503389120102 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85687966 chr16:85687968 nonsynonymous SNV 0.902 1 23 hm5C_associated_SNPs_23335 0 0 1 0 2 GSE1 chr16:85687884 3'AG 85687884 Downstream 85bp
chr16 85687968 85687968 1 + G T HNSC 85687966 + 85687946 85687986 41 TCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGC TCAGGAGAAGGCAGGGGGACCATCCATCCCCTCGCACCTGC < 41bp 1 0.22424216135692 1 0.227503389120102 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85687966 chr16:85687968 nonsynonymous SNV 0.902 1 23 hm5C_associated_SNPs_23335 0 0 1 0 2 GSE1 chr16:85688056 5'GT 85688056 Upstream 89bp
chr1 31811836 31811836 1 + C T HNSC 31811833 + 31811813 31811853 41 GATAGAATAAAAGTATCCCTCTCCATGAAGGTTGTCAATCA GATAGAATAAAAGTATCCCTCTCTATGAAGGTTGTCAATCA < 41bp 1 0.590780884676064 1 0.944318413734436 experiment 0.818438230647871 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZCCHC17 ENSG00000121766 CDS Human protein_coding chr1:31811833 chr1:31811836 synonymous SNV . 0 24 hm5C_associated_SNPs_23336 0 0 1 0 2 ZCCHC17 chr1:31811804 3'AG 31811804 Downstream 33bp
chr1 31811836 31811836 1 + C T HNSC 31811833 + 31811813 31811853 41 GATAGAATAAAAGTATCCCTCTCCATGAAGGTTGTCAATCA GATAGAATAAAAGTATCCCTCTCTATGAAGGTTGTCAATCA < 41bp 1 0.590780884676064 1 0.944318413734436 experiment 0.818438230647871 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZCCHC17 ENSG00000121766 CDS Human protein_coding chr1:31811833 chr1:31811836 synonymous SNV . 0 24 hm5C_associated_SNPs_23336 0 0 1 0 2 ZCCHC17 chr1:31811895 5'GT 31811895 Upstream 60bp
chr3 183885461 183885461 1 + G T HNSC 183885453 + 183885433 183885473 41 CCTGAATCAGGGTTGGAGGTCCGTGACCGCATGTGGCTCAA CCTGAATCAGGGTTGGAGGTCCGTGACCTCATGTGGCTCAA < 41bp 1 0.248155893575506 1 0.274539232254028 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DVL3 ENSG00000161202 CDS Human protein_coding chr3:183885453 chr3:183885461 nonsynonymous SNV 0.999 4 29 hm5C_associated_SNPs_23337 0 0 1 0 2 DVL3 chr3:183885368 3'AG 183885368 Downstream 94bp
chr3 183885461 183885461 1 + G T HNSC 183885453 + 183885433 183885473 41 CCTGAATCAGGGTTGGAGGTCCGTGACCGCATGTGGCTCAA CCTGAATCAGGGTTGGAGGTCCGTGACCTCATGTGGCTCAA < 41bp 1 0.248155893575506 1 0.274539232254028 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DVL3 ENSG00000161202 CDS Human protein_coding chr3:183885453 chr3:183885461 nonsynonymous SNV 0.999 4 29 hm5C_associated_SNPs_23337 0 0 1 0 2 DVL3 chr3:183885499 5'GT 183885499 Upstream 39bp
chr5 154179521 154179521 1 + G T HNSC 154179534 + 154179514 154179554 41 AGGGCCTGTCTGCCAGCCTGCCTGACCTGGATTCTGAGAAC AGGGCCTTTCTGCCAGCCTGCCTGACCTGGATTCTGAGAAC < 41bp 1 0.231566861602933 1 0.142346143722534 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154179534 chr5:154179521 synonymous SNV . 0 8 hm5C_associated_SNPs_23338 0 0 1 0 1 LARP1 chr5:154179602 5'GT 154179602 Upstream 82bp
chr17 64785040 64785040 1 + G A HNSC 64785043 + 64785023 64785063 41 CATGCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAA CATGCCTTCTTCCGGAGAATCGACTGGGAAAAACTGGAGAA < 41bp 1 0.400296379333093 1 0.429358661174774 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785043 chr17:64785040 synonymous SNV . 0 18 hm5C_associated_SNPs_23339 0 0 1 0 2 PRKCA chr17:64784957 3'AG 64784957 Downstream 84bp
chr17 64785040 64785040 1 + G A HNSC 64785043 + 64785023 64785063 41 CATGCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAA CATGCCTTCTTCCGGAGAATCGACTGGGAAAAACTGGAGAA < 41bp 1 0.400296379333093 1 0.429358661174774 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785043 chr17:64785040 synonymous SNV . 0 18 hm5C_associated_SNPs_23339 0 0 1 0 2 PRKCA chr17:64785097 5'GT 64785097 Upstream 58bp
chr17 64785040 64785040 1 + G A HNSC 64785046 + 64785026 64785066 41 GCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAACAG GCCTTCTTCCGGAGAATCGACTGGGAAAAACTGGAGAACAG < 41bp 1 0.602193719894929 1 0.482806235551834 experiment 0.795612560210142 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785046 chr17:64785040 synonymous SNV . 0 15 hm5C_associated_SNPs_23340 0 0 1 0 2 PRKCA chr17:64784957 3'AG 64784957 Downstream 84bp
chr17 64785040 64785040 1 + G A HNSC 64785046 + 64785026 64785066 41 GCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAACAG GCCTTCTTCCGGAGAATCGACTGGGAAAAACTGGAGAACAG < 41bp 1 0.602193719894929 1 0.482806235551834 experiment 0.795612560210142 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785046 chr17:64785040 synonymous SNV . 0 15 hm5C_associated_SNPs_23340 0 0 1 0 2 PRKCA chr17:64785097 5'GT 64785097 Upstream 58bp
chr12 111744752 111744752 1 + G T HNSC 111744768 + 111744748 111744788 41 CTCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACA CTCGTGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACA < 41bp 1 0.242055451679098 1 0.181320518255234 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744768 chr12:111744752 nonsynonymous SNV 0.042 3 5 hm5C_associated_SNPs_23341 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 28bp
chr12 111744752 111744752 1 + G T HNSC 111744769 + 111744749 111744789 41 TCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAG TCGTGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAG < 41bp 1 0.295059212358451 1 0.342361718416214 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744769 chr12:111744752 nonsynonymous SNV 0.042 3 4 hm5C_associated_SNPs_23342 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 28bp
chr2 86947840 86947840 1 + A T HNSC 86947846 + 86947826 86947866 41 GAAGGTGCTGCACAAGTTCTCAGGCTACGGGCAGCTGTGCG GAAGGTGCTGCACATGTTCTCAGGCTACGGGCAGCTGTGCG < 41bp 1 0.760045485434363 1 0.940584421157837 experiment 0.479909029131274 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control RMND5A ENSG00000153561 CDS Human protein_coding chr2:86947846 chr2:86947840 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_23343 0 0 1 0 1 RMND5A chr2:86947932 5'GT 86947932 Upstream 93bp
chr2 101622470 101622470 1 + G A HNSC 101622453 + 101622433 101622473 41 CCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGGATG CCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGAATG < 41bp 1 0.738416974570882 1 0.576389789581299 experiment 0.523166050858236 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622453 chr2:101622470 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_23345 0 0 1 0 2 RPL31 chr2:101622421 3'AG 101622421 Downstream 50bp
chr2 101622470 101622470 1 + G A HNSC 101622453 + 101622433 101622473 41 CCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGGATG CCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGAATG < 41bp 1 0.738416974570882 1 0.576389789581299 experiment 0.523166050858236 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622453 chr2:101622470 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_23345 0 0 1 0 2 RPL31 chr2:101622533 5'GT 101622533 Upstream 64bp
chr2 101622470 101622470 1 + G A HNSC 101622461 + 101622441 101622481 41 GTGTGCGGCTGTCCAGAAAACGTAATGAGGATGAAGATTCA GTGTGCGGCTGTCCAGAAAACGTAATGAGAATGAAGATTCA < 41bp 1 0.715365952934077 1 0.394184738397598 experiment 0.569268094131846 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622461 chr2:101622470 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_23346 0 0 1 0 2 RPL31 chr2:101622421 3'AG 101622421 Downstream 50bp
chr2 101622470 101622470 1 + G A HNSC 101622461 + 101622441 101622481 41 GTGTGCGGCTGTCCAGAAAACGTAATGAGGATGAAGATTCA GTGTGCGGCTGTCCAGAAAACGTAATGAGAATGAAGATTCA < 41bp 1 0.715365952934077 1 0.394184738397598 experiment 0.569268094131846 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622461 chr2:101622470 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_23346 0 0 1 0 2 RPL31 chr2:101622533 5'GT 101622533 Upstream 64bp
chr14 103802212 103802212 1 + C G HNSC 103802231 + 103802211 103802251 41 TCAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATG TGAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATG < 41bp 1 0.175960401397421 1 0.0521022379398346 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103802231 chr14:103802212 synonymous SNV . 0 2 hm5C_associated_SNPs_23348 0 0 1 0 1 EIF5 chr14:103802269 5'GT 103802269 Upstream 58bp
chr1 120283058 120283058 1 + G A HNSC 120283038 + 120283018 120283058 41 CAGGCCCTTACCAGTGCCTTCTCTCCACACACCAAGCCTTG CAGGCCCTTACCAGTGCCTTCTCTCCACACACCAAGCCTTA < 41bp 1 0.11746517598488 1 0.452867269515991 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120283038 chr1:120283058 stopgain 1.000 1 41 hm5C_associated_SNPs_23349 0 0 1 0 1 PHGDH chr1:120283009 3'AG 120283009 Downstream 50bp
chr1 228401943 228401943 1 + G A HNSC 228401926 + 228401906 228401946 41 GGCGGTGCGCGTGGGCGACACGGCTATGTTTTGCGTGGAGC GGCGGTGCGCGTGGGCGACACGGCTATGTTTTGCGTGAAGC < 41bp 1 0.185456347694808 1 0.593474328517914 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228401926 chr1:228401943 nonsynonymous SNV 0.866 3 38 hm5C_associated_SNPs_23350 0 0 1 0 1 OBSCN chr1:228401875 3'AG 228401875 Downstream 69bp
chr12 53664573 53664573 1 + G A HNSC 53664581 + 53664561 53664601 41 ACGGACCACATGGGGATGACCGGTTAGTGCCCTGGGTCCCA ACGGACCACATGAGGATGACCGGTTAGTGCCCTGGGTCCCA < 41bp 1 0.250324729406655 1 0.665262222290039 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53664581 chr12:53664573 nonsynonymous SNV 0.983 0 13 hm5C_associated_SNPs_23351 0 0 1 0 1 ESPL1 chr12:53664582 5'GT 53664582 Upstream 10bp
chr16 2569563 2569563 1 + C T HNSC 2569545 + 2569525 2569565 41 TCTCTTCTCGCCCCCAGGAGCTTCCTCCAGCTGGGCGCCGG TCTCTTCTCGCCCCCAGGAGCTTCCTCCAGCTGGGCGCTGG < 41bp 1 0.227401318629868 1 0.0377614498138428 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V0C ENSG00000185883 CDS Human protein_coding chr16:2569545 chr16:2569563 synonymous SNV . 0 39 hm5C_associated_SNPs_23354 0 0 1 0 1 ATP6V0C chr16:2569542 3'AG 2569542 Downstream 22bp
chr1 104115869 104115869 1 + A G HNSC 104115875 + 104115855 104115895 41 TATCGAGAACTACAATGATGCTACTCAGGTAAATTTTTTTA TATCGAGAACTACAGTGATGCTACTCAGGTAAATTTTTTTA < 41bp 1 0.240602863102944 1 0.0789848566055298 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AMY2B ENSG00000240038 CDS Human protein_coding chr1:104115875 chr1:104115869 nonsynonymous SNV 0.200 1 15 hm5C_associated_SNPs_23355 0 0 0 0 1 AMY2B chr1:104115882 5'GT 104115882 Upstream 14bp
chr1 906558 906558 1 + G A HNSC 906564 + 906544 906584 41 GCTGTCTGTGCCTCGAGGGTCAAGCTGCAGCACCTGCCCGC GCTGTCTGTGCCTCAAGGGTCAAGCTGCAGCACCTGCCCGC < 41bp 1 0.605540751653021 1 0.385301530361176 experiment 0.788918496693958 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:906564 chr1:906558 synonymous SNV . 0 15 hm5C_associated_SNPs_23356 0 0 0 0 2 PLEKHN1 chr1:906493 3'AG 906493 Downstream 66bp
chr1 906558 906558 1 + G A HNSC 906564 + 906544 906584 41 GCTGTCTGTGCCTCGAGGGTCAAGCTGCAGCACCTGCCCGC GCTGTCTGTGCCTCAAGGGTCAAGCTGCAGCACCTGCCCGC < 41bp 1 0.605540751653021 1 0.385301530361176 experiment 0.788918496693958 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:906564 chr1:906558 synonymous SNV . 0 15 hm5C_associated_SNPs_23356 0 0 0 0 2 PLEKHN1 chr1:906588 5'GT 906588 Upstream 31bp
chr1 17272863 17272863 1 + C T HNSC 17272843 + 17272823 17272863 41 GACTCCCTGTCCAAGCTGAGCGCCCTCAACGAGAGCCTTGC GACTCCCTGTCCAAGCTGAGCGCCCTCAACGAGAGCCTTGT < 41bp 1 0.123092686645936 1 0.0646290481090546 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CROCC ENSG00000058453 CDS Human protein_coding chr1:17272843 chr1:17272863 nonsynonymous SNV 0.967 3 41 hm5C_associated_SNPs_23357 0 0 0 0 1 CROCC chr1:17272900 5'GT 17272900 Upstream 38bp
chr11 65402557 65402557 1 + C T HNSC 65402544 + 65402524 65402564 41 TTGCCGACATGGACCTGCTTCACCGCGTTGTGGCGCCTGGG TTGCCGACATGGACCTGCTTCACCGCGTTGTGGTGCCTGGG < 41bp 1 0.253064864232948 1 0.109040290117264 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402544 chr11:65402557 nonsynonymous SNV 0.127 1 34 hm5C_associated_SNPs_23358 0 0 1 0 1 PCNX3 chr11:65402591 5'GT 65402591 Upstream 35bp
chr9 139563123 139563123 1 + C T HNSC 139563111 + 139563091 139563131 41 ACCTGCGACGGGCACCGGGCCTGCAGCACCTACCGGTGAGT ACCTGCGACGGGCACCGGGCCTGCAGCACCTATCGGTGAGT < 41bp 1 0.685653270584456 1 0.16651064157486 experiment 0.628693458831088 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EGFL7 ENSG00000172889 CDS Human protein_coding chr9:139563111 chr9:139563123 synonymous SNV . 0 33 hm5C_associated_SNPs_23360 0 0 0 0 1 EGFL7 chr9:139563125 5'GT 139563125 Upstream 3bp
chr7 44801094 44801094 1 + T C HNSC 44801091 + 44801071 44801111 41 CGGCTGACCTTCCCTGTGCGCGATGGGGTGGTCCTGGAGCC CGGCTGACCTTCCCTGTGCGCGACGGGGTGGTCCTGGAGCC < 41bp 1 0.578175691716852 1 0.640409529209137 experiment 0.843648616566296 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44801091 chr7:44801094 synonymous SNV . 0 24 hm5C_associated_SNPs_23361 0 0 1 0 2 ZMIZ2 chr7:44801048 3'AG 44801048 Downstream 47bp
chr7 44801094 44801094 1 + T C HNSC 44801091 + 44801071 44801111 41 CGGCTGACCTTCCCTGTGCGCGATGGGGTGGTCCTGGAGCC CGGCTGACCTTCCCTGTGCGCGACGGGGTGGTCCTGGAGCC < 41bp 1 0.578175691716852 1 0.640409529209137 experiment 0.843648616566296 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44801091 chr7:44801094 synonymous SNV . 0 24 hm5C_associated_SNPs_23361 0 0 1 0 2 ZMIZ2 chr7:44801192 5'GT 44801192 Upstream 99bp
chr8 145151332 145151332 1 + T C HNSC 145151319 + 145151299 145151339 41 GTTCGACTATTTCCCAAAACCATACCCCAACAGTGAGGCTG GTTCGACTATTTCCCAAAACCATACCCCAACAGCGAGGCTG < 41bp 1 0.16658855971989 1 0.0430470407009125 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151319 chr8:145151332 synonymous SNV . 0 34 hm5C_associated_SNPs_23362 0 0 1 0 2 CYC1 chr8:145151240 3'AG 145151240 Downstream 93bp
chr8 145151332 145151332 1 + T C HNSC 145151319 + 145151299 145151339 41 GTTCGACTATTTCCCAAAACCATACCCCAACAGTGAGGCTG GTTCGACTATTTCCCAAAACCATACCCCAACAGCGAGGCTG < 41bp 1 0.16658855971989 1 0.0430470407009125 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151319 chr8:145151332 synonymous SNV . 0 34 hm5C_associated_SNPs_23362 0 0 1 0 2 CYC1 chr8:145151397 5'GT 145151397 Upstream 66bp
chr3 183369021 183369021 1 + A G HNSC 183369020 + 183369000 183369040 41 CATGAAGCAAGACGGTACCACATACTTGGGAATGAAATGAT CATGAAGCAAGACGGTACCACGTACTTGGGAATGAAATGAT < 41bp 1 0.13138443391305 1 0.222517848014832 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLHL24 ENSG00000114796 CDS Human protein_coding chr3:183369020 chr3:183369021 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_23363 0 0 1 0 1 KLHL24 chr3:183369064 5'GT 183369064 Upstream 44bp
chr16 30096327 30096327 1 + C T HNSC 30096347 + 30096327 30096367 41 CCCCAAGAGACACGGGGCATCCCCTCCAAGAAGCCCGTGGC TCCCAAGAGACACGGGGCATCCCCTCCAAGAAGCCCGTGGC < 41bp 1 0.321934975065975 1 0.118390947580338 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP4C ENSG00000149923 CDS Human protein_coding chr16:30096347 chr16:30096327 nonsynonymous SNV 0.999 2 1 hm5C_associated_SNPs_23364 0 0 1 1 1 PPP4C chr16:30096254 3'AG 30096254 Downstream 74bp
chr8 98657027 98657027 1 + C T HNSC 98657015 + 98656995 98657035 41 CAAGCGGGAGGAGGCGGCGGCCGTGCCGGCCGCGGCCCCCG CAAGCGGGAGGAGGCGGCGGCCGTGCCGGCCGTGGCCCCCG < 41bp 1 0.568767910594769 1 0.560298323631287 experiment 0.862464178810461 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98657015 chr8:98657027 nonsynonymous SNV 0.002 0 33 hm5C_associated_SNPs_23365 0 0 1 0 1 MTDH chr8:98657115 5'GT 98657115 Upstream 89bp
chr8 98657027 98657027 1 + C T HNSC 98657016 + 98656996 98657036 41 AAGCGGGAGGAGGCGGCGGCCGTGCCGGCCGCGGCCCCCGA AAGCGGGAGGAGGCGGCGGCCGTGCCGGCCGTGGCCCCCGA < 41bp 1 0.795887503648337 1 0.884409308433533 experiment 0.408224992703327 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98657016 chr8:98657027 nonsynonymous SNV 0.002 0 32 hm5C_associated_SNPs_23366 0 0 1 0 1 MTDH chr8:98657115 5'GT 98657115 Upstream 89bp
chr8 98657027 98657027 1 + C T HNSC 98657024 + 98657004 98657044 41 GGAGGCGGCGGCCGTGCCGGCCGCGGCCCCCGACGACCTGG GGAGGCGGCGGCCGTGCCGGCCGTGGCCCCCGACGACCTGG < 41bp 1 0.621796205758056 1 0.498929679393768 experiment 0.756407588483888 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98657024 chr8:98657027 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_23367 0 0 1 0 1 MTDH chr8:98657115 5'GT 98657115 Upstream 89bp
chr8 98657027 98657027 1 + C T HNSC 98657025 + 98657005 98657045 41 GAGGCGGCGGCCGTGCCGGCCGCGGCCCCCGACGACCTGGC GAGGCGGCGGCCGTGCCGGCCGTGGCCCCCGACGACCTGGC < 41bp 1 0.668710467400798 1 0.661360144615173 experiment 0.662579065198405 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98657025 chr8:98657027 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_23368 0 0 1 0 1 MTDH chr8:98657115 5'GT 98657115 Upstream 89bp
chrX 107925107 107925107 1 + A T HNSC 107925116 + 107925096 107925136 41 CCAAGGACCTCAAGGCTTACCAGGTACCAATGCAGATCATC CCAAGGACCTCTAGGCTTACCAGGTACCAATGCAGATCATC < 41bp 1 0.303994465565013 1 0.833474636077881 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107925116 chrX:107925107 nonsynonymous SNV 0.990 2 12 hm5C_associated_SNPs_23369 0 0 1 0 1 COL4A5 chrX:107925118 5'GT 107925118 Upstream 12bp
chr2 47205965 47205965 1 + G A HNSC 47205958 + 47205938 47205978 41 ATAACAGCACGTCGAGGCATCTGAAAGGCTGTCACCCGCTT ATAACAGCACGTCGAGGCATCTGAAAGACTGTCACCCGCTT < 41bp 1 0.552423482692349 1 0.810165584087372 experiment 0.895153034615301 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47205958 chr2:47205965 nonsynonymous SNV 0.876 2 28 hm5C_associated_SNPs_23371 0 0 1 0 2 TTC7A chr2:47205931 3'AG 47205931 Downstream 35bp
chr2 47205965 47205965 1 + G A HNSC 47205958 + 47205938 47205978 41 ATAACAGCACGTCGAGGCATCTGAAAGGCTGTCACCCGCTT ATAACAGCACGTCGAGGCATCTGAAAGACTGTCACCCGCTT < 41bp 1 0.552423482692349 1 0.810165584087372 experiment 0.895153034615301 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47205958 chr2:47205965 nonsynonymous SNV 0.876 2 28 hm5C_associated_SNPs_23371 0 0 1 0 2 TTC7A chr2:47206046 5'GT 47206046 Upstream 82bp
chr5 5303769 5303769 1 + C A HNSC 5303760 + 5303740 5303780 41 CCAACCCCTCGGCCAGAGCGCAGCTGCTGCCCGACGCTGTC CCAACCCCTCGGCCAGAGCGCAGCTGCTGACCGACGCTGTC < 41bp 1 0.479745379554084 1 0.103218674659729 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5303760 chr5:5303769 nonsynonymous SNV 0.104 2 30 hm5C_associated_SNPs_23373 0 0 0 0 1 ADAMTS16 chr5:5303685 3'AG 5303685 Downstream 85bp
chr14 70235548 70235548 1 + A G HNSC 70235528 + 70235508 70235548 41 TTTGTAGGGTTACTATTGAACATGCTAGGGCTCGGTCACGA TTTGTAGGGTTACTATTGAACATGCTAGGGCTCGGTCACGG < 41bp 1 0.448512153750625 1 0.224020153284073 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRSF5 ENSG00000100650 CDS Human protein_coding chr14:70235528 chr14:70235548 synonymous SNV . 0 41 hm5C_associated_SNPs_23374 0 0 1 0 1 SRSF5 chr14:70235613 5'GT 70235613 Upstream 66bp
chr14 70235548 70235548 1 + A G HNSC 70235540 + 70235520 70235560 41 CTATTGAACATGCTAGGGCTCGGTCACGAGGTGGAAGAGGT CTATTGAACATGCTAGGGCTCGGTCACGGGGTGGAAGAGGT < 41bp 1 0.180855820223406 1 0.278237223625183 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRSF5 ENSG00000100650 CDS Human protein_coding chr14:70235540 chr14:70235548 synonymous SNV . 0 29 hm5C_associated_SNPs_23375 0 0 1 0 1 SRSF5 chr14:70235613 5'GT 70235613 Upstream 66bp
chr6 4935984 4935984 1 + G A HNSC 4935980 + 4935960 4936000 41 CTTGTTATCCACAAAGTCCTCAGAGAATAACTCACTAAATC CTTGTTATCCACAAAGTCCTCAGAAAATAACTCACTAAATC < 41bp 1 0.764844895314069 1 0.731609702110291 experiment 0.470310209371862 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDYL ENSG00000153046 CDS Human protein_coding chr6:4935980 chr6:4935984 synonymous SNV . 0 25 hm5C_associated_SNPs_23377 0 0 1 0 1 CDYL chr6:4936005 5'GT 4936005 Upstream 22bp
chr16 67917557 67917557 1 + G A HNSC 67917568 + 67917548 67917588 41 ACCCTGCCCGCTCTCCCAGCCTGTGCTCCTTTCCCTCATCC ACCCTGCCCACTCTCCCAGCCTGTGCTCCTTTCCCTCATCC < 41bp 1 0.270834933051518 1 0.0825860798358917 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67917568 chr16:67917557 synonymous SNV . 0 10 hm5C_associated_SNPs_23378 0 0 1 0 2 EDC4 chr16:67917471 3'AG 67917471 Downstream 87bp
chr16 67917557 67917557 1 + G A HNSC 67917568 + 67917548 67917588 41 ACCCTGCCCGCTCTCCCAGCCTGTGCTCCTTTCCCTCATCC ACCCTGCCCACTCTCCCAGCCTGTGCTCCTTTCCCTCATCC < 41bp 1 0.270834933051518 1 0.0825860798358917 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67917568 chr16:67917557 synonymous SNV . 0 10 hm5C_associated_SNPs_23378 0 0 1 0 2 EDC4 chr16:67917634 5'GT 67917634 Upstream 78bp
chr19 40704316 40704316 1 + C T HNSC 40704298 + 40704278 40704318 41 ACAGTCCTGATCCTGGAGGCCATCGAGAACCACAACCTCGC ACAGTCCTGATCCTGGAGGCCATCGAGAACCACAACCTTGC < 41bp 1 0.132256416491228 1 0.0632995069026947 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40704298 chr19:40704316 synonymous SNV . 0 39 hm5C_associated_SNPs_23382 0 0 0 0 1 MAP3K10 chr19:40704282 3'AG 40704282 Downstream 35bp
chr6 158449877 158449877 1 + A G HNSC 158449888 + 158449868 158449908 41 ATCACTGCCACTGACTTTTACCCTCTTCAGGAAGAGGCCAA ATCACTGCCGCTGACTTTTACCCTCTTCAGGAAGAGGCCAA < 41bp 1 0.061037416471311 1 0.0554773807525635 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158449888 chr6:158449877 nonsynonymous SNV 0.122 0 10 hm5C_associated_SNPs_23386 0 0 1 4 1 SYNJ2 chr6:158449788 3'AG 158449788 Downstream 90bp
chr11 85977185 85977185 1 + T C HNSC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTCGGAGGATCAATTCAAAGAGAATGATGAA < 41bp 1 0.166450851904556 1 0.141456812620163 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977185 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_23389 0 0 1 0 2 EED chr11:85977125 3'AG 85977125 Downstream 61bp
chr11 85977185 85977185 1 + T C HNSC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTCGGAGGATCAATTCAAAGAGAATGATGAA < 41bp 1 0.166450851904556 1 0.141456812620163 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977185 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_23389 0 0 1 0 2 EED chr11:85977258 5'GT 85977258 Upstream 74bp
chr9 35733425 35733425 1 + G A HNSC 35733405 + 35733385 35733425 41 TACCCTAGGAGATTGCTAGGCTAGTACTGACAGATGAGGAG TACCCTAGGAGATTGCTAGGCTAGTACTGACAGATGAGGAA < 41bp 1 0.322406465480865 1 0.147081583738327 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733405 chr9:35733425 synonymous SNV . 0 41 hm5C_associated_SNPs_23392 0 0 1 0 2 CREB3 chr9:35733393 3'AG 35733393 Downstream 33bp
chr9 35733425 35733425 1 + G A HNSC 35733405 + 35733385 35733425 41 TACCCTAGGAGATTGCTAGGCTAGTACTGACAGATGAGGAG TACCCTAGGAGATTGCTAGGCTAGTACTGACAGATGAGGAA < 41bp 1 0.322406465480865 1 0.147081583738327 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733405 chr9:35733425 synonymous SNV . 0 41 hm5C_associated_SNPs_23392 0 0 1 0 2 CREB3 chr9:35733482 5'GT 35733482 Upstream 58bp
chr9 35733425 35733425 1 + G A HNSC 35733411 + 35733391 35733431 41 AGGAGATTGCTAGGCTAGTACTGACAGATGAGGAGAAGAGT AGGAGATTGCTAGGCTAGTACTGACAGATGAGGAAAAGAGT < 41bp 1 0.157048717519844 1 0.458234697580338 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733411 chr9:35733425 synonymous SNV . 0 35 hm5C_associated_SNPs_23393 0 0 1 0 2 CREB3 chr9:35733393 3'AG 35733393 Downstream 33bp
chr9 35733425 35733425 1 + G A HNSC 35733411 + 35733391 35733431 41 AGGAGATTGCTAGGCTAGTACTGACAGATGAGGAGAAGAGT AGGAGATTGCTAGGCTAGTACTGACAGATGAGGAAAAGAGT < 41bp 1 0.157048717519844 1 0.458234697580338 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733411 chr9:35733425 synonymous SNV . 0 35 hm5C_associated_SNPs_23393 0 0 1 0 2 CREB3 chr9:35733482 5'GT 35733482 Upstream 58bp
chr9 35733425 35733425 1 + G A HNSC 35733415 + 35733395 35733435 41 GATTGCTAGGCTAGTACTGACAGATGAGGAGAAGAGTCTAT GATTGCTAGGCTAGTACTGACAGATGAGGAAAAGAGTCTAT < 41bp 1 0.405195837118633 1 0.162561476230621 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733415 chr9:35733425 synonymous SNV . 0 31 hm5C_associated_SNPs_23394 0 0 1 0 2 CREB3 chr9:35733393 3'AG 35733393 Downstream 33bp
chr9 35733425 35733425 1 + G A HNSC 35733415 + 35733395 35733435 41 GATTGCTAGGCTAGTACTGACAGATGAGGAGAAGAGTCTAT GATTGCTAGGCTAGTACTGACAGATGAGGAAAAGAGTCTAT < 41bp 1 0.405195837118633 1 0.162561476230621 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733415 chr9:35733425 synonymous SNV . 0 31 hm5C_associated_SNPs_23394 0 0 1 0 2 CREB3 chr9:35733482 5'GT 35733482 Upstream 58bp
chr14 105355926 105355926 1 + C T HNSC 105355938 + 105355918 105355958 41 ACGGCTCCCCCAAACACACACGCTCCCACACCTCAACAGCC ACGGCTCCTCCAAACACACACGCTCCCACACCTCAACAGCC < 41bp 1 0.0372251676862084 1 0.160391509532928 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP170B ENSG00000099814 CDS Human protein_coding chr14:105355938 chr14:105355926 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_23399 0 0 1 0 1 CEP170B chr14:105355852 3'AG 105355852 Downstream 75bp
chr3 128631364 128631364 1 + C G HNSC 128631356 + 128631336 128631376 41 CTTTTCCTTCCCAGATGCTCCAGAAAACCTAGATGAGCAGA CTTTTCCTTCCCAGATGCTCCAGAAAACGTAGATGAGCAGA < 41bp 1 0.544700978128268 1 0.539043545722961 experiment 0.910598043743463 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128631356 chr3:128631364 nonsynonymous SNV 0.995 1 29 hm5C_associated_SNPs_23400 0 0 1 0 1 ACAD9 chr3:128631350 3'AG 128631350 Downstream 15bp
chr20 57246299 57246299 1 + C T HNSC 57246308 + 57246288 57246328 41 ATTGTACAGTCCATTTCTGACCTGAATGAAATATTCAGGGA ATTGTACAGTCTATTTCTGACCTGAATGAAATATTCAGGGA < 41bp 1 0.401685687444916 1 0.184350699186325 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control STX16 ENSG00000124222;ENSG00000254995 CDS Human other chr20:57246308 chr20:57246299 synonymous SNV . 0 12 hm5C_associated_SNPs_23402 0 0 1 0 1 STX16 chr20:57246353 5'GT 57246353 Upstream 55bp
chr5 137735605 137735605 1 + G A HNSC 137735614 + 137735594 137735634 41 GTGATGTGTGTGAAACAACTCTCTTCAACATCCACTGGGTT GTGATGTGTGTAAAACAACTCTCTTCAACATCCACTGGGTT < 41bp 1 0.0936673256741547 1 0.058974951505661 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM3B ENSG00000120733 CDS Human protein_coding chr5:137735614 chr5:137735605 nonsynonymous SNV 0.999 4 12 hm5C_associated_SNPs_23403 0 0 1 0 2 KDM3B chr5:137735549 3'AG 137735549 Downstream 57bp
chr5 137735605 137735605 1 + G A HNSC 137735614 + 137735594 137735634 41 GTGATGTGTGTGAAACAACTCTCTTCAACATCCACTGGGTT GTGATGTGTGTAAAACAACTCTCTTCAACATCCACTGGGTT < 41bp 1 0.0936673256741547 1 0.058974951505661 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM3B ENSG00000120733 CDS Human protein_coding chr5:137735614 chr5:137735605 nonsynonymous SNV 0.999 4 12 hm5C_associated_SNPs_23403 0 0 1 0 2 KDM3B chr5:137735701 5'GT 137735701 Upstream 97bp
chr17 73564865 73564865 1 + G C HNSC 73564860 + 73564840 73564880 41 TCTCTTTTTCTAGGAGTGGCCAATTGATGGTGGCACCAGCC TCTCTTTTTCTAGGAGTGGCCAATTCATGGTGGCACCAGCC < 41bp 1 0.0638271862355193 1 0.488553166389465 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73564860 chr17:73564865 nonsynonymous SNV 0.709 3 26 hm5C_associated_SNPs_23404 0 0 1 0 1 LLGL2 chr17:73564853 3'AG 73564853 Downstream 13bp
chr15 63481934 63481934 1 + C T HNSC 63481916 + 63481896 63481936 41 CTGTTCCGCTTCTCAGAGGACGCCTTCAACACCACCTTCAT CTGTTCCGCTTCTCAGAGGACGCCTTCAACACCACCTTTAT < 41bp 1 0.570976887214416 1 0.143310725688934 experiment 0.858046225571168 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RAB8B ENSG00000166128 CDS Human protein_coding chr15:63481916 chr15:63481934 synonymous SNV . 0 39 hm5C_associated_SNPs_23405 0 0 1 0 1 RAB8B chr15:63481947 5'GT 63481947 Upstream 14bp
chr12 132325377 132325377 1 + G A HNSC 132325361 + 132325341 132325381 41 CACCACACCGCCGGGGACACCCACTTTGACGATGACGAGGC CACCACACCGCCGGGGACACCCACTTTGACGATGACAAGGC < 41bp 1 0.1942027208955 1 0.175704210996628 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132325361 chr12:132325377 nonsynonymous SNV 0.003 4 37 hm5C_associated_SNPs_23416 0 0 1 0 1 MMP17 chr12:132325401 5'GT 132325401 Upstream 25bp
chr8 30332300 30332300 1 + G C HNSC 30332319 + 30332299 30332339 41 GGACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACCT GCACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACCT < 41bp 1 0.0747154332295687 1 0.0420100092887878 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RBPMS ENSG00000157110 CDS Human protein_coding chr8:30332319 chr8:30332300 synonymous SNV . 0 2 hm5C_associated_SNPs_23417 0 0 1 0 2 RBPMS chr8:30332295 3'AG 30332295 Downstream 6bp
chr8 30332300 30332300 1 + G C HNSC 30332319 + 30332299 30332339 41 GGACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACCT GCACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACCT < 41bp 1 0.0747154332295687 1 0.0420100092887878 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RBPMS ENSG00000157110 CDS Human protein_coding chr8:30332319 chr8:30332300 synonymous SNV . 0 2 hm5C_associated_SNPs_23417 0 0 1 0 2 RBPMS chr8:30332372 5'GT 30332372 Upstream 73bp
chr9 72003134 72003134 1 + C T HNSC 72003140 + 72003120 72003160 41 ACTGGATCTGGCTGCAGTGACTCTGAGGAGAGGCTTGAGAT ACTGGATCTGGCTGTAGTGACTCTGAGGAGAGGCTTGAGAT < 41bp 1 0.547923463817118 1 0.342570096254349 experiment 0.904153072365764 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM189A2 ENSG00000135063 CDS Human protein_coding chr9:72003140 chr9:72003134 nonsynonymous SNV 0.969 1 15 hm5C_associated_SNPs_23418 0 0 0 0 1 FAM189A2 chr9:72003074 3'AG 72003074 Downstream 61bp
chr7 5643496 5643496 1 + G C HNSC 5643505 + 5643485 5643525 41 CTGGGACAGGGGACTCAGAGCTCTTCCTCATGAAGCTCATC CTGGGACAGGGCACTCAGAGCTCTTCCTCATGAAGCTCATC < 41bp 1 0.104539438639524 1 0.0604011416435242 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5643505 chr7:5643496 nonsynonymous SNV 0.252 1 12 hm5C_associated_SNPs_23419 0 0 1 0 1 FSCN1 chr7:5643494 3'AG 5643494 Downstream 3bp
chr7 5643496 5643496 1 + G C HNSC 5643510 + 5643490 5643530 41 ACAGGGGACTCAGAGCTCTTCCTCATGAAGCTCATCAACCG ACAGGGCACTCAGAGCTCTTCCTCATGAAGCTCATCAACCG < 41bp 1 0.324362841963497 1 0.0590589940547943 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5643510 chr7:5643496 nonsynonymous SNV 0.252 1 7 hm5C_associated_SNPs_23420 0 0 1 0 1 FSCN1 chr7:5643494 3'AG 5643494 Downstream 3bp
chr1 22336270 22336270 1 + G T HNSC 22336262 + 22336242 22336282 41 CTGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTG CTGGCAGGTCCACGGTGTGACCAGCTTTTTTTCTGCCTTTG < 41bp 1 0.277608383913837 1 0.130176842212677 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336262 chr1:22336270 nonsynonymous SNV 0.595 3 29 hm5C_associated_SNPs_23421 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 81bp
chr1 22336270 22336270 1 + G T HNSC 22336263 + 22336243 22336283 41 TGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGG TGGCAGGTCCACGGTGTGACCAGCTTTTTTTCTGCCTTTGG < 41bp 1 0.608072269404615 1 0.292660534381866 experiment 0.783855461190769 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336263 chr1:22336270 nonsynonymous SNV 0.595 3 28 hm5C_associated_SNPs_23422 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 81bp
chr1 22336270 22336270 1 + G T HNSC 22336266 + 22336246 22336286 41 CAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTG CAGGTCCACGGTGTGACCAGCTTTTTTTCTGCCTTTGGCTG < 41bp 1 0.0677079804713907 1 0.0431039929389954 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336266 chr1:22336270 nonsynonymous SNV 0.595 3 25 hm5C_associated_SNPs_23423 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 81bp
chr1 22336270 22336270 1 + G T HNSC 22336274 + 22336254 22336294 41 CGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCA CGGTGTGACCAGCTTTTTTTCTGCCTTTGGCTGCAACTTCA < 41bp 1 0.652681934740926 1 0.163330376148224 experiment 0.694636130518149 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336274 chr1:22336270 nonsynonymous SNV 0.595 3 17 hm5C_associated_SNPs_23424 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 81bp
chr1 22336270 22336270 1 + G T HNSC 22336277 + 22336257 22336297 41 TGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCT TGTGACCAGCTTTTTTTCTGCCTTTGGCTGCAACTTCATCT < 41bp 1 0.0371843386502488 1 0.0245248973369598 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336277 chr1:22336270 nonsynonymous SNV 0.595 3 14 hm5C_associated_SNPs_23425 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 81bp
chr1 22336270 22336270 1 + G T HNSC 22336278 + 22336258 22336298 41 GTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCTG GTGACCAGCTTTTTTTCTGCCTTTGGCTGCAACTTCATCTG < 41bp 1 0.277310439753024 1 0.0740772783756256 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336278 chr1:22336270 nonsynonymous SNV 0.595 3 13 hm5C_associated_SNPs_23426 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 81bp
chr1 22336270 22336270 1 + G T HNSC 22336284 + 22336264 22336304 41 AGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCC AGCTTTTTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCC < 41bp 1 0.767017382781736 1 0.452816188335419 experiment 0.465965234436528 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336284 chr1:22336270 nonsynonymous SNV 0.595 3 7 hm5C_associated_SNPs_23427 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 81bp
chr1 22336270 22336270 1 + G T HNSC 22336287 + 22336267 22336307 41 TTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCAC TTTTTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCAC < 41bp 1 0.226950041310072 1 0.0732473433017731 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336287 chr1:22336270 nonsynonymous SNV 0.595 3 4 hm5C_associated_SNPs_23428 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 81bp
chr1 22336270 22336270 1 + G T HNSC 22336290 + 22336270 22336310 41 GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT TTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT < 41bp 1 0.551775652228795 1 0.782853722572327 experiment 0.896448695542411 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336290 chr1:22336270 nonsynonymous SNV 0.595 3 1 hm5C_associated_SNPs_23429 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 81bp
chr19 18729276 18729276 1 + G C HNSC 18729284 + 18729264 18729304 41 ACCCTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCCAGGT ACCCTGGTGACCCCGCCTGGCCAGCACCTCAAGTTCCAGGT < 41bp 1 0.190507390078409 1 0.230303764343262 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM59L ENSG00000105696 CDS Human protein_coding chr19:18729284 chr19:18729276 nonsynonymous SNV 0.033 4 13 hm5C_associated_SNPs_23430 0 0 1 0 2 TMEM59L chr19:18729185 3'AG 18729185 Downstream 92bp
chr19 18729276 18729276 1 + G C HNSC 18729284 + 18729264 18729304 41 ACCCTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCCAGGT ACCCTGGTGACCCCGCCTGGCCAGCACCTCAAGTTCCAGGT < 41bp 1 0.190507390078409 1 0.230303764343262 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM59L ENSG00000105696 CDS Human protein_coding chr19:18729284 chr19:18729276 nonsynonymous SNV 0.033 4 13 hm5C_associated_SNPs_23430 0 0 1 0 2 TMEM59L chr19:18729302 5'GT 18729302 Upstream 27bp
chr1 36028893 36028893 1 + G C HNSC 36028874 + 36028854 36028894 41 GATCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAGT GATCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAACT < 41bp 1 0.0574892740992142 1 0.10185369849205 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028874 chr1:36028893 nonsynonymous SNV 0.999 1 40 hm5C_associated_SNPs_23431 0 0 1 0 1 NCDN chr1:36028803 3'AG 36028803 Downstream 91bp
chr1 36028893 36028893 1 + G C HNSC 36028876 + 36028856 36028896 41 TCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAGTAT TCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAACTAT < 41bp 1 0.0266134554779177 1 0.0817557573318481 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028876 chr1:36028893 nonsynonymous SNV 0.999 1 38 hm5C_associated_SNPs_23432 0 0 1 0 1 NCDN chr1:36028803 3'AG 36028803 Downstream 91bp
chr17 4797380 4797380 1 + G A HNSC 4797367 + 4797347 4797387 41 ACCCAGCCCCCATACGGGGGCGGCACCATGGTGGTCCAGCG ACCCAGCCCCCATACGGGGGCGGCACCATGGTGATCCAGCG < 41bp 1 0.416408810300008 1 0.149186849594116 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797367 chr17:4797380 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_23433 0 0 1 0 2 MINK1 chr17:4797283 3'AG 4797283 Downstream 98bp
chr17 4797380 4797380 1 + G A HNSC 4797367 + 4797347 4797387 41 ACCCAGCCCCCATACGGGGGCGGCACCATGGTGGTCCAGCG ACCCAGCCCCCATACGGGGGCGGCACCATGGTGATCCAGCG < 41bp 1 0.416408810300008 1 0.149186849594116 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797367 chr17:4797380 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_23433 0 0 1 0 2 MINK1 chr17:4797388 5'GT 4797388 Upstream 9bp
chrX 150156302 150156302 1 + C T HNSC 150156311 + 150156291 150156331 41 AAAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGG AAAGGGTCCTGTTAAAGTTGCCCGGAAAAAGGTGGAAGAGG < 41bp 1 0.442725930698929 1 0.108238399028778 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156311 chrX:150156302 nonsynonymous SNV 0.992 1 12 hm5C_associated_SNPs_23434 0 0 1 0 1 HMGB3 chrX:150156250 3'AG 150156250 Downstream 53bp
chrX 150156302 150156302 1 + C T HNSC 150156312 + 150156292 150156332 41 AAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGA AAGGGTCCTGTTAAAGTTGCCCGGAAAAAGGTGGAAGAGGA < 41bp 1 0.648866604615123 1 0.52464497089386 experiment 0.702266790769754 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156312 chrX:150156302 nonsynonymous SNV 0.992 1 11 hm5C_associated_SNPs_23435 0 0 1 0 1 HMGB3 chrX:150156250 3'AG 150156250 Downstream 53bp
chrX 150156302 150156302 1 + C T HNSC 150156313 + 150156293 150156333 41 AGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGAA AGGGTCCTGTTAAAGTTGCCCGGAAAAAGGTGGAAGAGGAA < 41bp 1 0.675385332223843 1 0.59221351146698 experiment 0.649229335552314 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156313 chrX:150156302 nonsynonymous SNV 0.992 1 10 hm5C_associated_SNPs_23436 0 0 1 0 1 HMGB3 chrX:150156250 3'AG 150156250 Downstream 53bp
chr1 46739822 46739822 1 + C T HNSC 46739819 + 46739799 46739839 41 TCCCCCTTCAGGTACTTATACGTCCGCCTGGATGGCACGAT TCCCCCTTCAGGTACTTATACGTTCGCCTGGATGGCACGAT < 41bp 1 0.0738481254295178 1 0.0704800486564636 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739819 chr1:46739822 synonymous SNV . 0 24 hm5C_associated_SNPs_23438 0 0 1 0 2 RAD54L chr1:46739810 3'AG 46739810 Downstream 13bp
chr1 46739822 46739822 1 + C T HNSC 46739819 + 46739799 46739839 41 TCCCCCTTCAGGTACTTATACGTCCGCCTGGATGGCACGAT TCCCCCTTCAGGTACTTATACGTTCGCCTGGATGGCACGAT < 41bp 1 0.0738481254295178 1 0.0704800486564636 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739819 chr1:46739822 synonymous SNV . 0 24 hm5C_associated_SNPs_23438 0 0 1 0 2 RAD54L chr1:46739888 5'GT 46739888 Upstream 67bp
chr5 908529 908529 1 + C T HNSC 908541 + 908521 908561 41 TCAGATGCCATCCGCGTGGTCAATGCTGTCTTGACCCAAAT TCAGATGCTATCCGCGTGGTCAATGCTGTCTTGACCCAAAT < 41bp 1 0.388444528326143 1 0.218799561262131 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908541 chr5:908529 synonymous SNV . 0 9 hm5C_associated_SNPs_23440 0 0 1 0 2 TRIP13 chr5:908470 3'AG 908470 Downstream 60bp
chr5 908529 908529 1 + C T HNSC 908541 + 908521 908561 41 TCAGATGCCATCCGCGTGGTCAATGCTGTCTTGACCCAAAT TCAGATGCTATCCGCGTGGTCAATGCTGTCTTGACCCAAAT < 41bp 1 0.388444528326143 1 0.218799561262131 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908541 chr5:908529 synonymous SNV . 0 9 hm5C_associated_SNPs_23440 0 0 1 0 2 TRIP13 chr5:908576 5'GT 908576 Upstream 48bp
chr19 2097286 2097286 1 + T G HNSC 2097268 + 2097248 2097288 41 CAGCCCGGGAGAAGCTGGACCAAGTGGCGACAGCAGTGTAC CAGCCCGGGAGAAGCTGGACCAAGTGGCGACAGCAGTGGAC < 41bp 1 0.629666785011191 1 0.540236353874207 experiment 0.740666429977619 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IZUMO4 ENSG00000099840 CDS Human protein_coding chr19:2097268 chr19:2097286 nonsynonymous SNV 0.865 2 39 hm5C_associated_SNPs_23443 0 0 1 0 2 IZUMO4 chr19:2097251 3'AG 2097251 Downstream 36bp
chr19 2097286 2097286 1 + T G HNSC 2097268 + 2097248 2097288 41 CAGCCCGGGAGAAGCTGGACCAAGTGGCGACAGCAGTGTAC CAGCCCGGGAGAAGCTGGACCAAGTGGCGACAGCAGTGGAC < 41bp 1 0.629666785011191 1 0.540236353874207 experiment 0.740666429977619 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IZUMO4 ENSG00000099840 CDS Human protein_coding chr19:2097268 chr19:2097286 nonsynonymous SNV 0.865 2 39 hm5C_associated_SNPs_23443 0 0 1 0 2 IZUMO4 chr19:2097331 5'GT 2097331 Upstream 46bp
chr10 94757357 94757357 1 + G A HNSC 94757363 + 94757343 94757383 41 AGTTTAACTTAGATGTCATACAGTGTGAATGTAAGTACTAT AGTTTAACTTAGATATCATACAGTGTGAATGTAAGTACTAT < 41bp 1 0.222287563143649 1 0.134468615055084 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC6 ENSG00000138190 CDS Human protein_coding chr10:94757363 chr10:94757357 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_23444 0 0 1 1 1 EXOC6 chr10:94757372 5'GT 94757372 Upstream 16bp
chr10 17276720 17276720 1 + G A HNSC 17276740 + 17276720 17276760 41 GGAACAATGACGCCCTGCGCCAGGCAAAGCAGGAGTCCACT AGAACAATGACGCCCTGCGCCAGGCAAAGCAGGAGTCCACT < 41bp 1 0.451634714663675 1 0.763182282447815 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276740 chr10:17276720 nonsynonymous SNV 0.998 3 1 hm5C_associated_SNPs_23447 0 0 1 0 2 VIM chr10:17276692 3'AG 17276692 Downstream 29bp
chr10 17276720 17276720 1 + G A HNSC 17276740 + 17276720 17276760 41 GGAACAATGACGCCCTGCGCCAGGCAAAGCAGGAGTCCACT AGAACAATGACGCCCTGCGCCAGGCAAAGCAGGAGTCCACT < 41bp 1 0.451634714663675 1 0.763182282447815 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276740 chr10:17276720 nonsynonymous SNV 0.998 3 1 hm5C_associated_SNPs_23447 0 0 1 0 2 VIM chr10:17276817 5'GT 17276817 Upstream 98bp
chr2 27663754 27663754 1 + C T HNSC 27663756 + 27663736 27663776 41 GTGACATCACCTGTCGTGCCCCCCTCTGTCAAGACTCCGAC GTGACATCACCTGTCGTGTCCCCCTCTGTCAAGACTCCGAC < 41bp 1 0.231782453464096 1 0.0164843797683716 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663756 chr2:27663754 nonsynonymous SNV 0.999 1 19 hm5C_associated_SNPs_23448 0 0 0 0 2 NRBP1 chr2:27663672 3'AG 27663672 Downstream 83bp
chr2 27663754 27663754 1 + C T HNSC 27663756 + 27663736 27663776 41 GTGACATCACCTGTCGTGCCCCCCTCTGTCAAGACTCCGAC GTGACATCACCTGTCGTGTCCCCCTCTGTCAAGACTCCGAC < 41bp 1 0.231782453464096 1 0.0164843797683716 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663756 chr2:27663754 nonsynonymous SNV 0.999 1 19 hm5C_associated_SNPs_23448 0 0 0 0 2 NRBP1 chr2:27663807 5'GT 27663807 Upstream 54bp
chr3 44442777 44442777 1 + A G HNSC 44442795 + 44442775 44442815 41 TTATTCTCACCAAAGCTCAGCAGGCAAGAGAGAACATGAAA TTGTTCTCACCAAAGCTCAGCAGGCAAGAGAGAACATGAAA < 41bp 1 0.321441116227855 1 0.182885199785233 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCAIM ENSG00000179152 CDS Human protein_coding chr3:44442795 chr3:44442777 nonsynonymous SNV 0.765 2 3 hm5C_associated_SNPs_23449 0 0 1 0 1 TCAIM chr3:44442695 3'AG 44442695 Downstream 83bp
chr20 25205869 25205869 1 + G A HNSC 25205875 + 25205855 25205895 41 GAGACACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT GAGACACAGCCGCAAAGCAGCCCCTTCTCATGCATGGACCT < 41bp 1 0.177453346087712 1 0.0213847458362579 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25205875 chr20:25205869 nonsynonymous SNV 0.001 1 15 hm5C_associated_SNPs_23451 0 0 1 0 3 ENTPD6 chr20:25205798 3'AG 25205798 Downstream 72bp
chr20 25205869 25205869 1 + G A HNSC 25205875 + 25205855 25205895 41 GAGACACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT GAGACACAGCCGCAAAGCAGCCCCTTCTCATGCATGGACCT < 41bp 1 0.177453346087712 1 0.0213847458362579 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25205875 chr20:25205869 nonsynonymous SNV 0.001 1 15 hm5C_associated_SNPs_23451 0 0 1 0 3 ENTPD6 chr20:25205841 3'AG 25205841 Downstream 29bp
chr20 25205869 25205869 1 + G A HNSC 25205875 + 25205855 25205895 41 GAGACACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT GAGACACAGCCGCAAAGCAGCCCCTTCTCATGCATGGACCT < 41bp 1 0.177453346087712 1 0.0213847458362579 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25205875 chr20:25205869 nonsynonymous SNV 0.001 1 15 hm5C_associated_SNPs_23451 0 0 1 0 3 ENTPD6 chr20:25205953 5'GT 25205953 Upstream 85bp
chr17 38142913 38142913 1 + A G HNSC 38142926 + 38142906 38142946 41 GAAGCCTATCTCCAACTCCTCGTGGTCATCTTCATGATGAA GAAGCCTGTCTCCAACTCCTCGTGGTCATCTTCATGATGAA < 41bp 1 0.414276087679778 1 0.146660327911377 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38142926 chr17:38142913 nonsynonymous SNV 0.968 5 8 hm5C_associated_SNPs_23452 0 0 1 0 2 PSMD3 chr17:38142828 3'AG 38142828 Downstream 86bp
chr17 38142913 38142913 1 + A G HNSC 38142926 + 38142906 38142946 41 GAAGCCTATCTCCAACTCCTCGTGGTCATCTTCATGATGAA GAAGCCTGTCTCCAACTCCTCGTGGTCATCTTCATGATGAA < 41bp 1 0.414276087679778 1 0.146660327911377 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38142926 chr17:38142913 nonsynonymous SNV 0.968 5 8 hm5C_associated_SNPs_23452 0 0 1 0 2 PSMD3 chr17:38142965 5'GT 38142965 Upstream 53bp
chr19 54621975 54621975 1 + T C HNSC 54621957 + 54621937 54621977 41 TTCTCCTTTCCTACAGTTTGCTGAGATTATGATGAAGATTG TTCTCCTTTCCTACAGTTTGCTGAGATTATGATGAAGACTG < 41bp 1 0.304395700490145 1 0.134231626987457 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54621957 chr19:54621975 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_23453 0 0 1 0 2 PRPF31 chr19:54621953 3'AG 54621953 Downstream 23bp
chr19 54621975 54621975 1 + T C HNSC 54621957 + 54621937 54621977 41 TTCTCCTTTCCTACAGTTTGCTGAGATTATGATGAAGATTG TTCTCCTTTCCTACAGTTTGCTGAGATTATGATGAAGACTG < 41bp 1 0.304395700490145 1 0.134231626987457 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54621957 chr19:54621975 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_23453 0 0 1 0 2 PRPF31 chr19:54622013 5'GT 54622013 Upstream 39bp
chr3 196545014 196545014 1 + A T HNSC 196545016 + 196544996 196545036 41 ACTTTTGGGAATGGAAGGATCTGTTAAGCTCAGTGAGTAAC ACTTTTGGGAATGGAAGGTTCTGTTAAGCTCAGTGAGTAAC < 41bp 1 0.234731029949997 1 0.0833050012588501 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PAK2 ENSG00000180370 CDS Human protein_coding chr3:196545016 chr3:196545014 synonymous SNV . 0 19 hm5C_associated_SNPs_23454 0 0 1 0 1 PAK2 chr3:196545027 5'GT 196545027 Upstream 14bp
chr2 66691249 66691249 1 + G A HNSC 66691259 + 66691239 66691279 41 AGCCCTCTTGGAACAGAGATCATGATGACACGGCATCTACT AGCCCTCTTGAAACAGAGATCATGATGACACGGCATCTACT < 41bp 1 0.503667307278218 1 0.196590423583984 experiment 0.992665385443564 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66691259 chr2:66691249 stopgain 1.000 1 11 hm5C_associated_SNPs_23455 0 0 0 1 1 MEIS1 chr2:66691241 3'AG 66691241 Downstream 9bp
chr1 240492727 240492727 1 + T A HNSC 240492713 + 240492693 240492733 41 CCTGTTCCAGTCCACATTTTCAGAAAGCATTTGCTCAATTC CCTGTTCCAGTCCACATTTTCAGAAAGCATTTGCACAATTC < 41bp 1 0.493159441343642 1 0.842207551002502 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FMN2 ENSG00000155816 CDS Human protein_coding chr1:240492713 chr1:240492727 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_23456 0 0 0 0 2 FMN2 chr1:240492639 3'AG 240492639 Downstream 89bp
chr1 240492727 240492727 1 + T A HNSC 240492713 + 240492693 240492733 41 CCTGTTCCAGTCCACATTTTCAGAAAGCATTTGCTCAATTC CCTGTTCCAGTCCACATTTTCAGAAAGCATTTGCACAATTC < 41bp 1 0.493159441343642 1 0.842207551002502 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FMN2 ENSG00000155816 CDS Human protein_coding chr1:240492713 chr1:240492727 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_23456 0 0 0 0 2 FMN2 chr1:240492768 5'GT 240492768 Upstream 42bp
chr9 112705583 112705583 1 + G A HNSC 112705590 + 112705570 112705610 41 TGAGCTTGTGTCCGGGAGGCCGGTCTCAGACACCACAGAGC TGAGCTTGTGTCCAGGAGGCCGGTCTCAGACACCACAGAGC < 41bp 1 0.078238036403087 1 0.253633558750153 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PALM2 ENSG00000157654;ENSG00000243444 CDS Human other chr9:112705590 chr9:112705583 nonsynonymous SNV 0.849 3 14 hm5C_associated_SNPs_23458 0 0 0 0 1 PALM2 chr9:112705661 5'GT 112705661 Upstream 79bp
chr19 49652940 49652940 1 + C T HNSC 49652931 + 49652911 49652951 41 TCGTTCGGCTGCAGCGGGAGCCCTGGGCTCTCCGGGGCTCC TCGTTCGGCTGCAGCGGGAGCCCTGGGCTTTCCGGGGCTCC < 41bp 1 0.113774318617225 1 0.146800011396408 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652931 chr19:49652940 nonsynonymous SNV 0.993 1 30 hm5C_associated_SNPs_23459 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 36bp
chr19 49652940 49652940 1 + C T HNSC 49652932 + 49652912 49652952 41 CGTTCGGCTGCAGCGGGAGCCCTGGGCTCTCCGGGGCTCCC CGTTCGGCTGCAGCGGGAGCCCTGGGCTTTCCGGGGCTCCC < 41bp 1 0.206512626787666 1 0.698428392410278 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652932 chr19:49652940 nonsynonymous SNV 0.993 1 29 hm5C_associated_SNPs_23460 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 36bp
chr19 49652940 49652940 1 + C T HNSC 49652948 + 49652928 49652968 41 GAGCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAG GAGCCCTGGGCTTTCCGGGGCTCCCTCTCCGCAAGCTGCAG < 41bp 1 0.0816343000315051 1 0.119139701128006 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652948 chr19:49652940 nonsynonymous SNV 0.993 1 13 hm5C_associated_SNPs_23461 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 36bp
chr19 49652940 49652940 1 + C T HNSC 49652950 + 49652930 49652970 41 GCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCC GCCCTGGGCTTTCCGGGGCTCCCTCTCCGCAAGCTGCAGCC < 41bp 1 0.0616728706736312 1 0.0577175915241241 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652950 chr19:49652940 nonsynonymous SNV 0.993 1 11 hm5C_associated_SNPs_23462 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 36bp
chr19 49652940 49652940 1 + C T HNSC 49652951 + 49652931 49652971 41 CCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCCA CCCTGGGCTTTCCGGGGCTCCCTCTCCGCAAGCTGCAGCCA < 41bp 1 0.0448314312186465 1 0.0351525247097015 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652951 chr19:49652940 nonsynonymous SNV 0.993 1 10 hm5C_associated_SNPs_23463 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 36bp
chr19 49652940 49652940 1 + C T HNSC 49652952 + 49652932 49652972 41 CCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCCAG CCTGGGCTTTCCGGGGCTCCCTCTCCGCAAGCTGCAGCCAG < 41bp 1 0.238628525338815 1 0.575424015522003 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652952 chr19:49652940 nonsynonymous SNV 0.993 1 9 hm5C_associated_SNPs_23464 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 36bp
chr17 40817761 40817761 1 + C T HNSC 40817780 + 40817760 40817800 41 TCATCGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC TTATCGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC < 41bp 1 0.331542069099308 1 0.0369589626789093 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817780 chr17:40817761 synonymous SNV . 0 2 hm5C_associated_SNPs_23465 0 0 0 0 2 TUBG2 chr17:40817696 3'AG 40817696 Downstream 66bp
chr17 40817761 40817761 1 + C T HNSC 40817780 + 40817760 40817800 41 TCATCGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC TTATCGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC < 41bp 1 0.331542069099308 1 0.0369589626789093 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817780 chr17:40817761 synonymous SNV . 0 2 hm5C_associated_SNPs_23465 0 0 0 0 2 TUBG2 chr17:40817845 5'GT 40817845 Upstream 85bp
chr19 49652942 49652942 1 + C T HNSC 49652931 + 49652911 49652951 41 TCGTTCGGCTGCAGCGGGAGCCCTGGGCTCTCCGGGGCTCC TCGTTCGGCTGCAGCGGGAGCCCTGGGCTCTTCGGGGCTCC < 41bp 1 0.153503619472866 1 0.0707582831382751 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652931 chr19:49652942 nonsynonymous SNV 0.987 0 32 hm5C_associated_SNPs_23466 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 34bp
chr19 49652942 49652942 1 + C T HNSC 49652932 + 49652912 49652952 41 CGTTCGGCTGCAGCGGGAGCCCTGGGCTCTCCGGGGCTCCC CGTTCGGCTGCAGCGGGAGCCCTGGGCTCTTCGGGGCTCCC < 41bp 1 0.178234573153079 1 0.393839955329895 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652932 chr19:49652942 nonsynonymous SNV 0.987 0 31 hm5C_associated_SNPs_23467 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 34bp
chr19 49652942 49652942 1 + C T HNSC 49652933 + 49652913 49652953 41 GTTCGGCTGCAGCGGGAGCCCTGGGCTCTCCGGGGCTCCCT GTTCGGCTGCAGCGGGAGCCCTGGGCTCTTCGGGGCTCCCT < 41bp 1 0.797551736855852 1 0.753436863422394 experiment 0.404896526288296 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652933 chr19:49652942 nonsynonymous SNV 0.987 0 30 hm5C_associated_SNPs_23468 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 34bp
chr19 49652942 49652942 1 + C T HNSC 49652948 + 49652928 49652968 41 GAGCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAG GAGCCCTGGGCTCTTCGGGGCTCCCTCTCCGCAAGCTGCAG < 41bp 1 0.0810413900026414 1 0.107333481311798 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652948 chr19:49652942 nonsynonymous SNV 0.987 0 15 hm5C_associated_SNPs_23469 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 34bp
chr19 49652942 49652942 1 + C T HNSC 49652950 + 49652930 49652970 41 GCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCC GCCCTGGGCTCTTCGGGGCTCCCTCTCCGCAAGCTGCAGCC < 41bp 1 0.0594528736727868 1 0.047562450170517 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652950 chr19:49652942 nonsynonymous SNV 0.987 0 13 hm5C_associated_SNPs_23470 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 34bp
chr19 49652942 49652942 1 + C T HNSC 49652951 + 49652931 49652971 41 CCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCCA CCCTGGGCTCTTCGGGGCTCCCTCTCCGCAAGCTGCAGCCA < 41bp 1 0.0385618713017915 1 0.0451708436012268 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652951 chr19:49652942 nonsynonymous SNV 0.987 0 12 hm5C_associated_SNPs_23471 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 34bp
chr19 49652942 49652942 1 + C T HNSC 49652952 + 49652932 49652972 41 CCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCCAG CCTGGGCTCTTCGGGGCTCCCTCTCCGCAAGCTGCAGCCAG < 41bp 1 0.232389090686947 1 0.591199576854706 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652952 chr19:49652942 nonsynonymous SNV 0.987 0 11 hm5C_associated_SNPs_23472 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 34bp
chr7 129093089 129093089 1 + C T HNSC 129093106 + 129093086 129093126 41 ATTCAGAGGTCGATGTGCTACACTGGTCCAGGTACAACTGC ATTTAGAGGTCGATGTGCTACACTGGTCCAGGTACAACTGC < 41bp 1 0.623012987534434 1 0.188028156757355 experiment 0.753974024931132 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129093106 chr7:129093089 nonsynonymous SNV 0.998 0 4 hm5C_associated_SNPs_23477 0 0 1 0 2 STRIP2 chr7:129093068 3'AG 129093068 Downstream 22bp
chr7 129093089 129093089 1 + C T HNSC 129093106 + 129093086 129093126 41 ATTCAGAGGTCGATGTGCTACACTGGTCCAGGTACAACTGC ATTTAGAGGTCGATGTGCTACACTGGTCCAGGTACAACTGC < 41bp 1 0.623012987534434 1 0.188028156757355 experiment 0.753974024931132 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129093106 chr7:129093089 nonsynonymous SNV 0.998 0 4 hm5C_associated_SNPs_23477 0 0 1 0 2 STRIP2 chr7:129093188 5'GT 129093188 Upstream 100bp
chr12 112227669 112227669 1 + C A HNSC 112227678 + 112227658 112227698 41 GGGAAAACCATCCCCATTGACGGAGACTTCTTCAGCTACAC GGGAAAACCATACCCATTGACGGAGACTTCTTCAGCTACAC < 41bp 1 0.712242217096554 1 0.860057473182678 experiment 0.575515565806892 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112227678 chr12:112227669 synonymous SNV . 0 12 hm5C_associated_SNPs_23478 0 0 1 0 2 ALDH2 chr12:112227627 3'AG 112227627 Downstream 43bp
chr12 112227669 112227669 1 + C A HNSC 112227678 + 112227658 112227698 41 GGGAAAACCATCCCCATTGACGGAGACTTCTTCAGCTACAC GGGAAAACCATACCCATTGACGGAGACTTCTTCAGCTACAC < 41bp 1 0.712242217096554 1 0.860057473182678 experiment 0.575515565806892 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112227678 chr12:112227669 synonymous SNV . 0 12 hm5C_associated_SNPs_23478 0 0 1 0 2 ALDH2 chr12:112227738 5'GT 112227738 Upstream 70bp
chr19 10897294 10897294 1 + A T HNSC 10897279 + 10897259 10897299 41 GGGAGTCGCTGCCGGCCCTACGTAGCAAACTACAGAGCCAG GGGAGTCGCTGCCGGCCCTACGTAGCAAACTACAGTGCCAG < 41bp 1 0.198656608070019 1 0.157701969146729 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10897279 chr19:10897294 nonsynonymous SNV 1.000 5 36 hm5C_associated_SNPs_23479 0 0 1 0 2 DNM2 chr19:10897240 3'AG 10897240 Downstream 55bp
chr19 10897294 10897294 1 + A T HNSC 10897279 + 10897259 10897299 41 GGGAGTCGCTGCCGGCCCTACGTAGCAAACTACAGAGCCAG GGGAGTCGCTGCCGGCCCTACGTAGCAAACTACAGTGCCAG < 41bp 1 0.198656608070019 1 0.157701969146729 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10897279 chr19:10897294 nonsynonymous SNV 1.000 5 36 hm5C_associated_SNPs_23479 0 0 1 0 2 DNM2 chr19:10897382 5'GT 10897382 Upstream 89bp
chr6 31601231 31601231 1 + G A HNSC 31601218 + 31601198 31601238 41 CCCACCTCCCAGCAGTTCTGCTGTCTTCCGCCTGGACCAAG CCCACCTCCCAGCAGTTCTGCTGTCTTCCGCCTAGACCAAG < 41bp 1 0.282103854566859 1 0.109017789363861 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31601218 chr6:31601231 synonymous SNV . 0 34 hm5C_associated_SNPs_23481 0 0 1 0 1 PRRC2A chr6:31601156 3'AG 31601156 Downstream 76bp
chr12 6618931 6618931 1 + A C HNSC 6618914 + 6618894 6618934 41 GCCTTTCGAGCTCAGGGGCCCCTGGCTATGCTGCAGCACTT GCCTTTCGAGCTCAGGGGCCCCTGGCTATGCTGCAGCCCTT < 41bp 1 0.143352283254319 1 0.0866802334785461 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6618914 chr12:6618931 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_23482 0 0 1 0 2 NCAPD2 chr12:6618883 3'AG 6618883 Downstream 49bp
chr12 6618931 6618931 1 + A C HNSC 6618914 + 6618894 6618934 41 GCCTTTCGAGCTCAGGGGCCCCTGGCTATGCTGCAGCACTT GCCTTTCGAGCTCAGGGGCCCCTGGCTATGCTGCAGCCCTT < 41bp 1 0.143352283254319 1 0.0866802334785461 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6618914 chr12:6618931 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_23482 0 0 1 0 2 NCAPD2 chr12:6618958 5'GT 6618958 Upstream 28bp
chr2 74782758 74782758 1 + G T HNSC 74782770 + 74782750 74782790 41 GCCCTGGAGATGCTGGAGAACTCCTTGTACAGCCCTACCTG GCCCTGGATATGCTGGAGAACTCCTTGTACAGCCCTACCTG < 41bp 1 0.447429743561997 1 0.442048162221909 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DOK1 ENSG00000115325 CDS Human protein_coding chr2:74782770 chr2:74782758 nonsynonymous SNV 1.000 0 9 hm5C_associated_SNPs_23484 0 0 1 0 3 DOK1 chr2:74782702 3'AG 74782702 Downstream 57bp
chr2 74782758 74782758 1 + G T HNSC 74782770 + 74782750 74782790 41 GCCCTGGAGATGCTGGAGAACTCCTTGTACAGCCCTACCTG GCCCTGGATATGCTGGAGAACTCCTTGTACAGCCCTACCTG < 41bp 1 0.447429743561997 1 0.442048162221909 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DOK1 ENSG00000115325 CDS Human protein_coding chr2:74782770 chr2:74782758 nonsynonymous SNV 1.000 0 9 hm5C_associated_SNPs_23484 0 0 1 0 3 DOK1 chr2:74782706 3'AG 74782706 Downstream 53bp
chr2 74782758 74782758 1 + G T HNSC 74782770 + 74782750 74782790 41 GCCCTGGAGATGCTGGAGAACTCCTTGTACAGCCCTACCTG GCCCTGGATATGCTGGAGAACTCCTTGTACAGCCCTACCTG < 41bp 1 0.447429743561997 1 0.442048162221909 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DOK1 ENSG00000115325 CDS Human protein_coding chr2:74782770 chr2:74782758 nonsynonymous SNV 1.000 0 9 hm5C_associated_SNPs_23484 0 0 1 0 3 DOK1 chr2:74782795 5'GT 74782795 Upstream 38bp
chr1 45218850 45218850 1 + G A HNSC 45218831 + 45218811 45218851 41 CACTAGGCCTTCCTGCCCTGCAGTGGCTGAAATACCATTGA CACTAGGCCTTCCTGCCCTGCAGTGGCTGAAATACCATTAA < 41bp 1 0.368719743133769 1 0.275592625141144 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF2C ENSG00000142945 CDS Human protein_coding chr1:45218831 chr1:45218850 synonymous SNV . 0 40 hm5C_associated_SNPs_23485 0 0 1 0 2 KIF2C chr1:45218804 3'AG 45218804 Downstream 47bp
chr1 45218850 45218850 1 + G A HNSC 45218831 + 45218811 45218851 41 CACTAGGCCTTCCTGCCCTGCAGTGGCTGAAATACCATTGA CACTAGGCCTTCCTGCCCTGCAGTGGCTGAAATACCATTAA < 41bp 1 0.368719743133769 1 0.275592625141144 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF2C ENSG00000142945 CDS Human protein_coding chr1:45218831 chr1:45218850 synonymous SNV . 0 40 hm5C_associated_SNPs_23485 0 0 1 0 2 KIF2C chr1:45218926 5'GT 45218926 Upstream 77bp
chr1 45218850 45218850 1 + G A HNSC 45218837 + 45218817 45218857 41 GCCTTCCTGCCCTGCAGTGGCTGAAATACCATTGAGGATGG GCCTTCCTGCCCTGCAGTGGCTGAAATACCATTAAGGATGG < 41bp 1 0.793364266624292 1 0.206846445798874 experiment 0.413271466751415 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF2C ENSG00000142945 CDS Human protein_coding chr1:45218837 chr1:45218850 synonymous SNV . 0 34 hm5C_associated_SNPs_23486 0 0 1 0 2 KIF2C chr1:45218804 3'AG 45218804 Downstream 47bp
chr1 45218850 45218850 1 + G A HNSC 45218837 + 45218817 45218857 41 GCCTTCCTGCCCTGCAGTGGCTGAAATACCATTGAGGATGG GCCTTCCTGCCCTGCAGTGGCTGAAATACCATTAAGGATGG < 41bp 1 0.793364266624292 1 0.206846445798874 experiment 0.413271466751415 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF2C ENSG00000142945 CDS Human protein_coding chr1:45218837 chr1:45218850 synonymous SNV . 0 34 hm5C_associated_SNPs_23486 0 0 1 0 2 KIF2C chr1:45218926 5'GT 45218926 Upstream 77bp
chr1 45218850 45218850 1 + G A HNSC 45218845 + 45218825 45218865 41 GCCCTGCAGTGGCTGAAATACCATTGAGGATGGTCAGCGAG GCCCTGCAGTGGCTGAAATACCATTAAGGATGGTCAGCGAG < 41bp 1 0.164443580990498 1 0.0601127743721008 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF2C ENSG00000142945 CDS Human protein_coding chr1:45218845 chr1:45218850 synonymous SNV . 0 26 hm5C_associated_SNPs_23487 0 0 1 0 2 KIF2C chr1:45218804 3'AG 45218804 Downstream 47bp
chr1 45218850 45218850 1 + G A HNSC 45218845 + 45218825 45218865 41 GCCCTGCAGTGGCTGAAATACCATTGAGGATGGTCAGCGAG GCCCTGCAGTGGCTGAAATACCATTAAGGATGGTCAGCGAG < 41bp 1 0.164443580990498 1 0.0601127743721008 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF2C ENSG00000142945 CDS Human protein_coding chr1:45218845 chr1:45218850 synonymous SNV . 0 26 hm5C_associated_SNPs_23487 0 0 1 0 2 KIF2C chr1:45218926 5'GT 45218926 Upstream 77bp
chr1 45218850 45218850 1 + G A HNSC 45218862 + 45218842 45218882 41 ATACCATTGAGGATGGTCAGCGAGGAGATGGAAGAGCAAGT ATACCATTAAGGATGGTCAGCGAGGAGATGGAAGAGCAAGT < 41bp 1 0.501632265061875 1 0.530737161636353 experiment 0.996735469876249 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF2C ENSG00000142945 CDS Human protein_coding chr1:45218862 chr1:45218850 synonymous SNV . 0 9 hm5C_associated_SNPs_23488 0 0 1 0 2 KIF2C chr1:45218804 3'AG 45218804 Downstream 47bp
chr1 45218850 45218850 1 + G A HNSC 45218862 + 45218842 45218882 41 ATACCATTGAGGATGGTCAGCGAGGAGATGGAAGAGCAAGT ATACCATTAAGGATGGTCAGCGAGGAGATGGAAGAGCAAGT < 41bp 1 0.501632265061875 1 0.530737161636353 experiment 0.996735469876249 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF2C ENSG00000142945 CDS Human protein_coding chr1:45218862 chr1:45218850 synonymous SNV . 0 9 hm5C_associated_SNPs_23488 0 0 1 0 2 KIF2C chr1:45218926 5'GT 45218926 Upstream 77bp
chr2 204078305 204078305 1 + G C HNSC 204078310 + 204078290 204078330 41 GTTTGTGTCACCAAAGAATACAGCCATATTCTTGTAGGTTT GTTTGTGTCACCAAACAATACAGCCATATTCTTGTAGGTTT < 41bp 1 0.262212284150686 1 0.0697667300701141 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204078310 chr2:204078305 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_23489 0 0 0 0 2 NBEAL1 chr2:204078241 3'AG 204078241 Downstream 65bp
chr2 204078305 204078305 1 + G C HNSC 204078310 + 204078290 204078330 41 GTTTGTGTCACCAAAGAATACAGCCATATTCTTGTAGGTTT GTTTGTGTCACCAAACAATACAGCCATATTCTTGTAGGTTT < 41bp 1 0.262212284150686 1 0.0697667300701141 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204078310 chr2:204078305 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_23489 0 0 0 0 2 NBEAL1 chr2:204078376 5'GT 204078376 Upstream 72bp
chr3 184045463 184045463 1 + G C HNSC 184045472 + 184045452 184045492 41 AGGCTATCATTGAGGAATATCTCCATCTCAATGACATGAAA AGGCTATCATTCAGGAATATCTCCATCTCAATGACATGAAA < 41bp 1 0.740543202892029 1 0.859813213348389 experiment 0.518913594215942 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184045472 chr3:184045463 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_23490 0 0 1 0 2 EIF4G1 chr3:184045374 3'AG 184045374 Downstream 90bp
chr3 184045463 184045463 1 + G C HNSC 184045472 + 184045452 184045492 41 AGGCTATCATTGAGGAATATCTCCATCTCAATGACATGAAA AGGCTATCATTCAGGAATATCTCCATCTCAATGACATGAAA < 41bp 1 0.740543202892029 1 0.859813213348389 experiment 0.518913594215942 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184045472 chr3:184045463 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_23490 0 0 1 0 2 EIF4G1 chr3:184045492 5'GT 184045492 Upstream 30bp
chr8 61757439 61757439 1 + G C HNSC 61757430 + 61757410 61757450 41 ATTTGCTTTGCAGTTGGGGACGGTGGACAGACATTCTTTCC ATTTGCTTTGCAGTTGGGGACGGTGGACACACATTCTTTCC < 41bp 1 0.200293098215033 1 0.517277896404266 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHD7 ENSG00000171316 CDS Human protein_coding chr8:61757430 chr8:61757439 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_23491 0 0 1 0 1 CHD7 chr8:61757423 3'AG 61757423 Downstream 17bp
chr11 67787208 67787208 1 + G A HNSC 67787211 + 67787191 67787231 41 TTGCTGTGGTGCTGGGCGGGCCCCAGGAGACGGGGCAGCTG TTGCTGTGGTGCTGGGCAGGCCCCAGGAGACGGGGCAGCTG < 41bp 1 0.502345076312946 1 0.53596031665802 experiment 0.995309847374108 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67787211 chr11:67787208 nonsynonymous SNV 0.784 2 18 hm5C_associated_SNPs_23492 0 0 0 0 2 ALDH3B1 chr11:67787184 3'AG 67787184 Downstream 25bp
chr11 67787208 67787208 1 + G A HNSC 67787211 + 67787191 67787231 41 TTGCTGTGGTGCTGGGCGGGCCCCAGGAGACGGGGCAGCTG TTGCTGTGGTGCTGGGCAGGCCCCAGGAGACGGGGCAGCTG < 41bp 1 0.502345076312946 1 0.53596031665802 experiment 0.995309847374108 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67787211 chr11:67787208 nonsynonymous SNV 0.784 2 18 hm5C_associated_SNPs_23492 0 0 0 0 2 ALDH3B1 chr11:67787265 5'GT 67787265 Upstream 58bp
chr11 67787208 67787208 1 + G A HNSC 67787212 + 67787192 67787232 41 TGCTGTGGTGCTGGGCGGGCCCCAGGAGACGGGGCAGCTGC TGCTGTGGTGCTGGGCAGGCCCCAGGAGACGGGGCAGCTGC < 41bp 1 0.276414428844028 1 0.553558826446533 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67787212 chr11:67787208 nonsynonymous SNV 0.784 2 17 hm5C_associated_SNPs_23493 0 0 0 0 2 ALDH3B1 chr11:67787184 3'AG 67787184 Downstream 25bp
chr11 67787208 67787208 1 + G A HNSC 67787212 + 67787192 67787232 41 TGCTGTGGTGCTGGGCGGGCCCCAGGAGACGGGGCAGCTGC TGCTGTGGTGCTGGGCAGGCCCCAGGAGACGGGGCAGCTGC < 41bp 1 0.276414428844028 1 0.553558826446533 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67787212 chr11:67787208 nonsynonymous SNV 0.784 2 17 hm5C_associated_SNPs_23493 0 0 0 0 2 ALDH3B1 chr11:67787265 5'GT 67787265 Upstream 58bp
chr2 157406233 157406233 1 + C A HNSC 157406248 + 157406228 157406268 41 ACCCCCAGACAGGGAAAGTGCGTGTGAGCGGCGCACGGTGC ACCCCAAGACAGGGAAAGTGCGTGTGAGCGGCGCACGGTGC < 41bp 1 0.636850892207703 1 0.441954374313354 experiment 0.726298215584594 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157406248 chr2:157406233 nonsynonymous SNV 0.633 0 6 hm5C_associated_SNPs_23495 0 0 0 1 1 GPD2 chr2:157406284 5'GT 157406284 Upstream 52bp
chr11 67376948 67376948 1 + G C HNSC 67376960 + 67376940 67376980 41 TGAACGCAGACGAGGGGGAGCCGGGCACCTGCAAGGACCGG TGAACGCACACGAGGGGGAGCCGGGCACCTGCAAGGACCGG < 41bp 1 0.41380717256798 1 0.72754430770874 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67376960 chr11:67376948 nonsynonymous SNV 0.935 5 9 hm5C_associated_SNPs_23498 0 0 1 0 1 NDUFV1 chr11:67376923 3'AG 67376923 Downstream 26bp
chr12 73012775 73012775 1 + T C HNSC 73012771 + 73012751 73012791 41 CTGCCAGCCGAGCTCTTTATCCTCTAGATAAATTACTGGAC CTGCCAGCCGAGCTCTTTATCCTCCAGATAAATTACTGGAC < 41bp 1 0.0786936187312215 1 0.303368717432022 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRHDE ENSG00000072657 CDS Human protein_coding chr12:73012771 chr12:73012775 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_23499 0 0 0 0 1 TRHDE chr12:73012818 5'GT 73012818 Upstream 44bp
chr12 53849783 53849783 1 + G T HNSC 53849767 + 53849747 53849787 41 TTCAAAGCCTTTGCTATGATCATTGACAAACTGGAAGAGGT TTCAAAGCCTTTGCTATGATCATTGACAAACTGGAATAGGT < 41bp 1 0.167816755603889 1 0.0826996564865112 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PCBP2 ENSG00000197111 CDS Human protein_coding chr12:53849767 chr12:53849783 stopgain 1.000 1 37 hm5C_associated_SNPs_23501 0 0 1 0 1 PCBP2 chr12:53849785 5'GT 53849785 Upstream 3bp
chr18 56402442 56402442 1 + G C HNSC 56402451 + 56402431 56402471 41 AAGGTGTCAAGGAGCAGAAGCTTTTGAAATCCAGCATTCTG AAGGTGTCAAGCAGCAGAAGCTTTTGAAATCCAGCATTCTG < 41bp 1 0.0326024820442014 1 0.0194087624549866 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MALT1 ENSG00000172175 CDS Human protein_coding chr18:56402451 chr18:56402442 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_23502 0 0 1 0 1 MALT1 chr18:56402434 3'AG 56402434 Downstream 9bp
chr5 72798854 72798854 1 + G C HNSC 72798844 + 72798824 72798864 41 CATTACAGGCCATGCTGAGACAAAGCAGCTGACAGAAATGC CATTACAGGCCATGCTGAGACAAAGCAGCTCACAGAAATGC < 41bp 1 0.628008105109288 1 0.394893407821655 experiment 0.743983789781423 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTF3 ENSG00000145741 CDS Human protein_coding chr5:72798844 chr5:72798854 synonymous SNV . 0 31 hm5C_associated_SNPs_23503 0 0 1 1 1 BTF3 chr5:72798942 5'GT 72798942 Upstream 89bp
chr20 35176500 35176500 1 + A G HNSC 35176493 + 35176473 35176513 41 AGCGAGGCCCCGGGGCCCATCAACTTCACCATGTTCCTCAC AGCGAGGCCCCGGGGCCCATCAACTTCGCCATGTTCCTCAC < 41bp 1 0.594822099929152 1 0.783656716346741 experiment 0.810355800141696 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MYL9 ENSG00000101335 CDS Human protein_coding chr20:35176493 chr20:35176500 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_23504 0 0 0 0 2 MYL9 chr20:35176435 3'AG 35176435 Downstream 66bp
chr20 35176500 35176500 1 + A G HNSC 35176493 + 35176473 35176513 41 AGCGAGGCCCCGGGGCCCATCAACTTCACCATGTTCCTCAC AGCGAGGCCCCGGGGCCCATCAACTTCGCCATGTTCCTCAC < 41bp 1 0.594822099929152 1 0.783656716346741 experiment 0.810355800141696 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MYL9 ENSG00000101335 CDS Human protein_coding chr20:35176493 chr20:35176500 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_23504 0 0 0 0 2 MYL9 chr20:35176596 5'GT 35176596 Upstream 97bp
chr1 161173235 161173235 1 + G A HNSC 161173246 + 161173226 161173266 41 GAGGTGTTCGGCAGTGGCAGCCAGATGTGGAATGGGCACAG GAGGTGTTCAGCAGTGGCAGCCAGATGTGGAATGGGCACAG < 41bp 1 0.643115949624547 1 0.716034710407257 experiment 0.713768100750907 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161173246 chr1:161173235 nonsynonymous SNV 0.998 2 10 hm5C_associated_SNPs_23505 0 0 1 0 2 NDUFS2 chr1:161173193 3'AG 161173193 Downstream 43bp
chr1 161173235 161173235 1 + G A HNSC 161173246 + 161173226 161173266 41 GAGGTGTTCGGCAGTGGCAGCCAGATGTGGAATGGGCACAG GAGGTGTTCAGCAGTGGCAGCCAGATGTGGAATGGGCACAG < 41bp 1 0.643115949624547 1 0.716034710407257 experiment 0.713768100750907 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161173246 chr1:161173235 nonsynonymous SNV 0.998 2 10 hm5C_associated_SNPs_23505 0 0 1 0 2 NDUFS2 chr1:161173333 5'GT 161173333 Upstream 99bp
chr2 27900722 27900722 1 + G A HNSC 27900703 + 27900683 27900723 41 TGTCCCGGAAGAAACTTCACCTGAGAACTTTTGAACTGAGG TGTCCCGGAAGAAACTTCACCTGAGAACTTTTGAACTGAAG < 41bp 1 0.27799542561184 1 0.246346920728683 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27900703 chr2:27900722 nonsynonymous SNV 0.995 1 40 hm5C_associated_SNPs_23506 0 0 1 0 1 SLC4A1AP chr2:27900791 5'GT 27900791 Upstream 70bp
chr19 42848890 42848890 1 + G T HNSC 42848907 + 42848887 42848927 41 TTCGTCACGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT TTCTTCACGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT < 41bp 1 0.313850928965124 1 0.147659748792648 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42848907 chr19:42848890 nonsynonymous SNV 0.456 3 4 hm5C_associated_SNPs_23507 0 0 1 0 2 MEGF8 chr19:42848822 3'AG 42848822 Downstream 69bp
chr19 42848890 42848890 1 + G T HNSC 42848907 + 42848887 42848927 41 TTCGTCACGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT TTCTTCACGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT < 41bp 1 0.313850928965124 1 0.147659748792648 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42848907 chr19:42848890 nonsynonymous SNV 0.456 3 4 hm5C_associated_SNPs_23507 0 0 1 0 2 MEGF8 chr19:42848985 5'GT 42848985 Upstream 96bp
chr1 874667 874667 1 + T C HNSC 874684 + 874664 874704 41 TGCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGAC TGCCGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGAC < 41bp 1 0.534006468595848 1 0.437510311603546 experiment 0.931987062808304 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874684 chr1:874667 nonsynonymous SNV 0.025 3 4 hm5C_associated_SNPs_23508 0 0 0 0 1 SAMD11 chr1:874652 3'AG 874652 Downstream 16bp
chr1 874667 874667 1 + T C HNSC 874685 + 874665 874705 41 GCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGACC GCCGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGACC < 41bp 1 0.555171264381146 1 0.450270980596542 experiment 0.889657471237707 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874685 chr1:874667 nonsynonymous SNV 0.025 3 3 hm5C_associated_SNPs_23509 0 0 0 0 1 SAMD11 chr1:874652 3'AG 874652 Downstream 16bp
chr16 30664127 30664127 1 + C T HNSC 30664142 + 30664122 30664162 41 TGCCTCGCCACCCCGGCAGGCCGGGTGGTCCTCGCAGGCCA TGCCTTGCCACCCCGGCAGGCCGGGTGGTCCTCGCAGGCCA < 41bp 1 0.703059877554173 1 0.565787672996521 experiment 0.593880244891653 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRR14 ENSG00000156858 CDS Human protein_coding chr16:30664142 chr16:30664127 nonsynonymous SNV 0.009 0 6 hm5C_associated_SNPs_23510 0 0 1 0 2 PRR14 chr16:30664042 3'AG 30664042 Downstream 86bp
chr16 30664127 30664127 1 + C T HNSC 30664142 + 30664122 30664162 41 TGCCTCGCCACCCCGGCAGGCCGGGTGGTCCTCGCAGGCCA TGCCTTGCCACCCCGGCAGGCCGGGTGGTCCTCGCAGGCCA < 41bp 1 0.703059877554173 1 0.565787672996521 experiment 0.593880244891653 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRR14 ENSG00000156858 CDS Human protein_coding chr16:30664142 chr16:30664127 nonsynonymous SNV 0.009 0 6 hm5C_associated_SNPs_23510 0 0 1 0 2 PRR14 chr16:30664163 5'GT 30664163 Upstream 37bp
chr18 13057631 13057631 1 + G C HNSC 13057639 + 13057619 13057659 41 CATGCTTGCTGTGTCGGGATCGCTTCCCAGACCCTCCTCAG CATGCTTGCTGTCTCGGGATCGCTTCCCAGACCCTCCTCAG < 41bp 1 0.265381151496458 1 0.126980096101761 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13057639 chr18:13057631 nonsynonymous SNV 0.954 2 13 hm5C_associated_SNPs_23511 0 0 1 0 1 CEP192 chr18:13057584 3'AG 13057584 Downstream 48bp
chr21 40191453 40191453 1 + G A HNSC 40191451 + 40191431 40191471 41 TCCCAAAGACCACGACTCCCCTGAGAACGGTGCGGACAGCT TCCCAAAGACCACGACTCCCCTAAGAACGGTGCGGACAGCT < 41bp 1 0.431986747747161 1 0.23714604973793 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191451 chr21:40191453 nonsynonymous SNV 0.023 0 23 hm5C_associated_SNPs_23512 0 0 1 0 1 ETS2 chr21:40191427 3'AG 40191427 Downstream 27bp
chr5 112868689 112868689 1 + G C HNSC 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA CGCTGTGGCTGAAAGAGTTGCCGCAGACAGACGGGAAAGGA < 41bp 1 0.522112043643562 1 0.1002456843853 experiment 0.955775912712875 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868689 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_23513 0 0 1 0 1 YTHDC2 chr5:112868742 5'GT 112868742 Upstream 54bp
chr5 112868689 112868689 1 + G C HNSC 112868683 + 112868663 112868703 41 GCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT GCTGTGGCTGAAAGAGTTGCCGCAGACAGACGGGAAAGGAT < 41bp 1 0.595966157194087 1 0.749688506126404 experiment 0.808067685611826 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868683 chr5:112868689 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_23514 0 0 1 0 1 YTHDC2 chr5:112868742 5'GT 112868742 Upstream 54bp
chr3 150321201 150321201 1 + G C HNSC 150321221 + 150321201 150321241 41 GAGGCCTCGGCCAATCTGGGCGGCGTGCCCAGCAAGAGATT CAGGCCTCGGCCAATCTGGGCGGCGTGCCCAGCAAGAGATT < 41bp 1 0.766078626312435 1 0.425613224506378 experiment 0.467842747375129 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SELENOT ENSG00000198843 CDS Human protein_coding chr3:150321221 chr3:150321201 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_23515 0 0 1 0 1 SELENOT chr3:150321286 5'GT 150321286 Upstream 86bp
chr19 15222217 15222217 1 + G A HNSC 15222222 + 15222202 15222242 41 GCGGTCTGCCTATCTGAGGACCTGTACCCCGATATCAATGT GCGGTCTGCCTATCTAAGGACCTGTACCCCGATATCAATGT < 41bp 1 0.0515601003342745 1 0.0242379009723663 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15222222 chr19:15222217 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_23516 0 0 0 0 2 SYDE1 chr19:15222124 3'AG 15222124 Downstream 94bp
chr19 15222217 15222217 1 + G A HNSC 15222222 + 15222202 15222242 41 GCGGTCTGCCTATCTGAGGACCTGTACCCCGATATCAATGT GCGGTCTGCCTATCTAAGGACCTGTACCCCGATATCAATGT < 41bp 1 0.0515601003342745 1 0.0242379009723663 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15222222 chr19:15222217 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_23516 0 0 0 0 2 SYDE1 chr19:15222250 5'GT 15222250 Upstream 34bp
chr3 160137327 160137327 1 + G T HNSC 160137312 + 160137292 160137332 41 AAAAAAATCTGGCAGGATTCCAGGAATATATGGAAGATTGG AAAAAAATCTGGCAGGATTCCAGGAATATATGGAATATTGG < 41bp 1 0.781958189905079 1 0.460602998733521 experiment 0.436083620189841 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160137312 chr3:160137327 nonsynonymous SNV 0.998 5 36 hm5C_associated_SNPs_23517 0 0 1 0 1 SMC4 chr3:160137331 5'GT 160137331 Upstream 5bp
chr5 153760021 153760021 1 + G A HNSC 153760010 + 153759990 153760030 41 ATCTCTTGGCTTCTTCAGACCGCATTGCTCGGAACCGCAAG ATCTCTTGGCTTCTTCAGACCGCATTGCTCGAAACCGCAAG < 41bp 1 0.190839523771658 1 0.119844615459442 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153760010 chr5:153760021 synonymous SNV . 0 32 hm5C_associated_SNPs_23518 0 0 1 0 1 GALNT10 chr5:153760008 3'AG 153760008 Downstream 14bp
chr5 153760021 153760021 1 + G A HNSC 153760024 + 153760004 153760044 41 TCAGACCGCATTGCTCGGAACCGCAAGACCATTGTGTGCCC TCAGACCGCATTGCTCGAAACCGCAAGACCATTGTGTGCCC < 41bp 1 0.503401812792606 1 0.233085989952087 experiment 0.993196374414787 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153760024 chr5:153760021 synonymous SNV . 0 18 hm5C_associated_SNPs_23519 0 0 1 0 1 GALNT10 chr5:153760008 3'AG 153760008 Downstream 14bp
chr15 65152104 65152104 1 + C G HNSC 65152098 + 65152078 65152118 41 CCATCTTGCCCACAGGTCAGCGACATCAAATTCCAGGCACC CCATCTTGCCCACAGGTCAGCGACATGAAATTCCAGGCACC < 41bp 1 0.50044760275586 1 0.406839609146118 experiment 0.999104794488279 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHO2 ENSG00000241839;ENSG00000249240 CDS Human other chr15:65152098 chr15:65152104 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_23521 0 0 0 0 2 PLEKHO2 chr15:65152093 3'AG 65152093 Downstream 12bp
chr15 65152104 65152104 1 + C G HNSC 65152098 + 65152078 65152118 41 CCATCTTGCCCACAGGTCAGCGACATCAAATTCCAGGCACC CCATCTTGCCCACAGGTCAGCGACATGAAATTCCAGGCACC < 41bp 1 0.50044760275586 1 0.406839609146118 experiment 0.999104794488279 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHO2 ENSG00000241839;ENSG00000249240 CDS Human other chr15:65152098 chr15:65152104 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_23521 0 0 0 0 2 PLEKHO2 chr15:65152197 5'GT 65152197 Upstream 94bp
chrX 41000592 41000592 1 + G A HNSC 41000586 + 41000566 41000606 41 TCAATGGAAAGATGAATGCACTGAATGAAGTTAATAAGGTG TCAATGGAAAGATGAATGCACTGAATAAAGTTAATAAGGTG < 41bp 1 0.268278702790841 1 0.468676626682281 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41000586 chrX:41000592 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_23522 0 0 1 0 2 USP9X chrX:41000546 3'AG 41000546 Downstream 47bp
chrX 41000592 41000592 1 + G A HNSC 41000586 + 41000566 41000606 41 TCAATGGAAAGATGAATGCACTGAATGAAGTTAATAAGGTG TCAATGGAAAGATGAATGCACTGAATAAAGTTAATAAGGTG < 41bp 1 0.268278702790841 1 0.468676626682281 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41000586 chrX:41000592 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_23522 0 0 1 0 2 USP9X chrX:41000684 5'GT 41000684 Upstream 93bp
chr16 29994478 29994478 1 + C G HNSC 29994488 + 29994468 29994508 41 ATCAGCGCCTCCAGCCAGAGCAGCTCCGTCAACAGCCTAGC ATCAGCGCCTGCAGCCAGAGCAGCTCCGTCAACAGCCTAGC < 41bp 1 0.332474411462859 1 0.269552230834961 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994488 chr16:29994478 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_23523 0 0 1 0 1 TAOK2 chr16:29994393 3'AG 29994393 Downstream 86bp
chr16 29994478 29994478 1 + C G HNSC 29994493 + 29994473 29994513 41 CGCCTCCAGCCAGAGCAGCTCCGTCAACAGCCTAGCAGATG CGCCTGCAGCCAGAGCAGCTCCGTCAACAGCCTAGCAGATG < 41bp 1 0.0805092087886834 1 0.225979715585709 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994493 chr16:29994478 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_23524 0 0 1 0 1 TAOK2 chr16:29994393 3'AG 29994393 Downstream 86bp
chrX 71401627 71401627 1 + G A HNSC 71401639 + 71401619 71401659 41 AACAACAAGCTTCCAAGATGCCGCCCAAAGGAAAAAGTGGT AACAACAAACTTCCAAGATGCCGCCCAAAGGAAAAAGTGGT < 41bp 1 0.100816543136876 1 0.257991313934326 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PIN4 ENSG00000102309 CDS Human protein_coding chrX:71401639 chrX:71401627 nonsynonymous SNV 0.000 0 9 hm5C_associated_SNPs_23525 0 0 0 0 1 PIN4 chrX:71401678 5'GT 71401678 Upstream 52bp
chr16 57786709 57786709 1 + G C HNSC 57786697 + 57786677 57786717 41 TCGCCTGGCCCAGGAGCGTCCTCTTCAACCCAGACGGCTGC TCGCCTGGCCCAGGAGCGTCCTCTTCAACCCACACGGCTGC < 41bp 1 0.19554549202509 1 0.191257864236832 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57786697 chr16:57786709 nonsynonymous SNV 0.925 5 33 hm5C_associated_SNPs_23526 0 0 1 0 1 KATNB1 chr16:57786690 3'AG 57786690 Downstream 20bp
chr16 57786709 57786709 1 + G C HNSC 57786702 + 57786682 57786722 41 TGGCCCAGGAGCGTCCTCTTCAACCCAGACGGCTGCTGCCT TGGCCCAGGAGCGTCCTCTTCAACCCACACGGCTGCTGCCT < 41bp 1 0.397799218561598 1 0.19084706902504 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57786702 chr16:57786709 nonsynonymous SNV 0.925 5 28 hm5C_associated_SNPs_23527 0 0 1 0 1 KATNB1 chr16:57786690 3'AG 57786690 Downstream 20bp
chr9 139749723 139749723 1 + G A HNSC 139749738 + 139749718 139749758 41 GGGCAGACAGGCCCGGGGGGCGTCGTGGGTCTGGACGACCT GGGCAAACAGGCCCGGGGGGCGTCGTGGGTCTGGACGACCT < 41bp 1 0.199350782466324 1 0.358616292476654 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139749738 chr9:139749723 synonymous SNV . 0 6 hm5C_associated_SNPs_23528 0 0 1 0 2 MAMDC4 chr9:139749706 3'AG 139749706 Downstream 18bp
chr9 139749723 139749723 1 + G A HNSC 139749738 + 139749718 139749758 41 GGGCAGACAGGCCCGGGGGGCGTCGTGGGTCTGGACGACCT GGGCAAACAGGCCCGGGGGGCGTCGTGGGTCTGGACGACCT < 41bp 1 0.199350782466324 1 0.358616292476654 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139749738 chr9:139749723 synonymous SNV . 0 6 hm5C_associated_SNPs_23528 0 0 1 0 2 MAMDC4 chr9:139749790 5'GT 139749790 Upstream 68bp
chr2 233671317 233671317 1 + A T HNSC 233671297 + 233671277 233671317 41 GTGTGATGAAAGCTTCCAACCTCTTGGCGATATCATGAAAA GTGTGATGAAAGCTTCCAACCTCTTGGCGATATCATGAAAT < 41bp 1 0.202339822647834 1 0.325406134128571 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671297 chr2:233671317 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_23529 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 51bp
chr17 34001260 34001260 1 + G A HNSC 34001266 + 34001246 34001286 41 ACTCACCGCCAAGGGCACATCTATATGGAAATGAACTTCAC ACTCACCGCCAAGGACACATCTATATGGAAATGAACTTCAC < 41bp 1 0.545919632744562 1 0.60204416513443 experiment 0.908160734510877 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP2B1 ENSG00000006125 CDS Human protein_coding chr17:34001266 chr17:34001260 synonymous SNV . 0 15 hm5C_associated_SNPs_23530 0 0 1 0 2 AP2B1 chr17:34001195 3'AG 34001195 Downstream 66bp
chr17 34001260 34001260 1 + G A HNSC 34001266 + 34001246 34001286 41 ACTCACCGCCAAGGGCACATCTATATGGAAATGAACTTCAC ACTCACCGCCAAGGACACATCTATATGGAAATGAACTTCAC < 41bp 1 0.545919632744562 1 0.60204416513443 experiment 0.908160734510877 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP2B1 ENSG00000006125 CDS Human protein_coding chr17:34001266 chr17:34001260 synonymous SNV . 0 15 hm5C_associated_SNPs_23530 0 0 1 0 2 AP2B1 chr17:34001340 5'GT 34001340 Upstream 81bp
chr16 30998261 30998261 1 + G A HNSC 30998260 + 30998240 30998280 41 ACTTCTACCGCCAGGGCCTGCGCCTGGGAGGTTGGCTCTTC ACTTCTACCGCCAGGGCCTGCACCTGGGAGGTTGGCTCTTC < 41bp 1 0.608490231349962 1 0.207854092121124 experiment 0.783019537300076 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSD3B7 ENSG00000099377 CDS Human protein_coding chr16:30998260 chr16:30998261 nonsynonymous SNV 0.695 4 22 hm5C_associated_SNPs_23532 0 0 0 0 1 HSD3B7 chr16:30998323 5'GT 30998323 Upstream 63bp
chr6 147525760 147525760 1 + G A HNSC 147525772 + 147525752 147525792 41 TCCGCCTGGGAACCGGGAGCCGGAGATCCAGGAAACGCTCC TCCGCCTGAGAACCGGGAGCCGGAGATCCAGGAAACGCTCC < 41bp 1 0.680705713764537 1 0.927506625652313 experiment 0.638588572470927 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STXBP5 ENSG00000164506 CDS Human protein_coding chr6:147525772 chr6:147525760 nonsynonymous SNV 0.989 1 9 hm5C_associated_SNPs_23536 0 0 1 0 1 STXBP5 chr6:147525818 5'GT 147525818 Upstream 59bp
chr1 27088729 27088729 1 + C T HNSC 27088714 + 27088694 27088734 41 GCTCAGCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA GCTCAGCCTTATCTCCGCGTCAGCCTTCCGGAGGATAGATA < 41bp 1 0.196289032944718 1 0.0512232184410095 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27088714 chr1:27088729 stopgain 1.000 1 36 hm5C_associated_SNPs_23537 0 0 1 0 2 ARID1A chr1:27088643 3'AG 27088643 Downstream 87bp
chr1 27088729 27088729 1 + C T HNSC 27088714 + 27088694 27088734 41 GCTCAGCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA GCTCAGCCTTATCTCCGCGTCAGCCTTCCGGAGGATAGATA < 41bp 1 0.196289032944718 1 0.0512232184410095 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27088714 chr1:27088729 stopgain 1.000 1 36 hm5C_associated_SNPs_23537 0 0 1 0 2 ARID1A chr1:27088810 5'GT 27088810 Upstream 82bp
chr4 41652416 41652416 1 + G A HNSC 41652424 + 41652404 41652444 41 TTATAGGTAGACGGGAAAGTCAGTGTGAATGGAGAGACGGT TTATAGGTAGACAGGAAAGTCAGTGTGAATGGAGAGACGGT < 41bp 1 0.264627398523394 1 0.360642313957214 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41652424 chr4:41652416 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_23538 0 0 1 0 1 LIMCH1 chr4:41652410 3'AG 41652410 Downstream 7bp
chr5 176520484 176520484 1 + C T HNSC 176520483 + 176520463 176520503 41 GCGTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCCGGCCTCG GCGTCTCTCCTCCAGCGGCCCTGCCTTGCTCGCCGGCCTCG < 41bp 1 0.309882468431465 1 0.0616801083087921 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176520483 chr5:176520484 nonsynonymous SNV 0.043 1 22 hm5C_associated_SNPs_23539 0 0 1 0 3 FGFR4 chr5:176520407 3'AG 176520407 Downstream 78bp
chr5 176520484 176520484 1 + C T HNSC 176520483 + 176520463 176520503 41 GCGTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCCGGCCTCG GCGTCTCTCCTCCAGCGGCCCTGCCTTGCTCGCCGGCCTCG < 41bp 1 0.309882468431465 1 0.0616801083087921 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176520483 chr5:176520484 nonsynonymous SNV 0.043 1 22 hm5C_associated_SNPs_23539 0 0 1 0 3 FGFR4 chr5:176520502 5'GT 176520502 Upstream 19bp
chr5 176520484 176520484 1 + C T HNSC 176520483 + 176520463 176520503 41 GCGTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCCGGCCTCG GCGTCTCTCCTCCAGCGGCCCTGCCTTGCTCGCCGGCCTCG < 41bp 1 0.309882468431465 1 0.0616801083087921 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176520483 chr5:176520484 nonsynonymous SNV 0.043 1 22 hm5C_associated_SNPs_23539 0 0 1 0 3 FGFR4 chr5:176520552 5'GT 176520552 Upstream 69bp
chrX 47069517 47069517 1 + G C HNSC 47069520 + 47069500 47069540 41 TGCACAACTTCCCTCCTGACCAGGTAATGCCCAGTTGTTGG TGCACAACTTCCCTCCTCACCAGGTAATGCCCAGTTGTTGG < 41bp 1 0.492377866168078 1 0.634246408939362 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UBA1 ENSG00000130985 CDS Human protein_coding chrX:47069520 chrX:47069517 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_23541 0 0 1 0 1 UBA1 chrX:47069522 5'GT 47069522 Upstream 6bp
chr5 176710792 176710792 1 + G A HNSC 176710791 + 176710771 176710811 41 TTCTTTTGGAATTCTAGGACCGAATCATTGATGCTGGTCCC TTCTTTTGGAATTCTAGGACCAAATCATTGATGCTGGTCCC < 41bp 1 0.0647591237436759 1 0.268729597330093 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176710791 chr5:176710792 nonsynonymous SNV 0.996 5 22 hm5C_associated_SNPs_23542 2 0 1 0 1 NSD1 chr5:176710788 3'AG 176710788 Downstream 5bp
chr16 29811305 29811305 1 + G A HNSC 29811295 + 29811275 29811315 41 CCACCAGAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGGA CCACCAGAGGCAAAGAGAGCCCGAGGCCCTAAGGAAGAGGA < 41bp 1 0.240024646722217 1 0.785466432571411 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811295 chr16:29811305 nonsynonymous SNV 0.996 0 31 hm5C_associated_SNPs_23543 0 0 1 0 2 KIF22 chr16:29811234 3'AG 29811234 Downstream 72bp
chr16 29811305 29811305 1 + G A HNSC 29811295 + 29811275 29811315 41 CCACCAGAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGGA CCACCAGAGGCAAAGAGAGCCCGAGGCCCTAAGGAAGAGGA < 41bp 1 0.240024646722217 1 0.785466432571411 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811295 chr16:29811305 nonsynonymous SNV 0.996 0 31 hm5C_associated_SNPs_23543 0 0 1 0 2 KIF22 chr16:29811369 5'GT 29811369 Upstream 65bp
chr16 29811305 29811305 1 + G A HNSC 29811301 + 29811281 29811321 41 GAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGGAGATCGG GAGGCAAAGAGAGCCCGAGGCCCTAAGGAAGAGGAGATCGG < 41bp 1 0.234688386853639 1 0.169519543647766 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811301 chr16:29811305 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_23544 0 0 1 0 2 KIF22 chr16:29811234 3'AG 29811234 Downstream 72bp
chr16 29811305 29811305 1 + G A HNSC 29811301 + 29811281 29811321 41 GAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGGAGATCGG GAGGCAAAGAGAGCCCGAGGCCCTAAGGAAGAGGAGATCGG < 41bp 1 0.234688386853639 1 0.169519543647766 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811301 chr16:29811305 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_23544 0 0 1 0 2 KIF22 chr16:29811369 5'GT 29811369 Upstream 65bp
chr1 22332233 22332233 1 + C G HNSC 22332213 + 22332193 22332233 41 ACCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC ACCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATG < 41bp 1 0.684168252093887 1 0.332476198673248 experiment 0.631663495812226 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332213 chr1:22332233 nonsynonymous SNV 0.911 4 41 hm5C_associated_SNPs_23545 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 79bp
chr1 22332233 22332233 1 + C G HNSC 22332213 + 22332193 22332233 41 ACCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC ACCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATG < 41bp 1 0.684168252093887 1 0.332476198673248 experiment 0.631663495812226 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332213 chr1:22332233 nonsynonymous SNV 0.911 4 41 hm5C_associated_SNPs_23545 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 57bp
chr1 22332233 22332233 1 + C G HNSC 22332214 + 22332194 22332234 41 CCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA CCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATGA < 41bp 1 0.548651191400044 1 0.310924887657166 experiment 0.902697617199913 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332214 chr1:22332233 nonsynonymous SNV 0.911 4 40 hm5C_associated_SNPs_23546 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 79bp
chr1 22332233 22332233 1 + C G HNSC 22332214 + 22332194 22332234 41 CCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA CCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATGA < 41bp 1 0.548651191400044 1 0.310924887657166 experiment 0.902697617199913 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332214 chr1:22332233 nonsynonymous SNV 0.911 4 40 hm5C_associated_SNPs_23546 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 57bp
chr1 22332233 22332233 1 + C G HNSC 22332215 + 22332195 22332235 41 CTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA CTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATGAA < 41bp 1 0.6746227605979 1 0.205919355154037 experiment 0.6507544788042 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332215 chr1:22332233 nonsynonymous SNV 0.911 4 39 hm5C_associated_SNPs_23547 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 79bp
chr1 22332233 22332233 1 + C G HNSC 22332215 + 22332195 22332235 41 CTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA CTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATGAA < 41bp 1 0.6746227605979 1 0.205919355154037 experiment 0.6507544788042 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332215 chr1:22332233 nonsynonymous SNV 0.911 4 39 hm5C_associated_SNPs_23547 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 57bp
chr1 22332233 22332233 1 + C G HNSC 22332227 + 22332207 22332247 41 GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCT GAGGGCCCCGAGCAGGTGATCCCCATGAACTCTGAGGAGCT < 41bp 1 0.55134518790485 1 0.104128539562225 experiment 0.8973096241903 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332227 chr1:22332233 nonsynonymous SNV 0.911 4 27 hm5C_associated_SNPs_23548 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 79bp
chr1 22332233 22332233 1 + C G HNSC 22332227 + 22332207 22332247 41 GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCT GAGGGCCCCGAGCAGGTGATCCCCATGAACTCTGAGGAGCT < 41bp 1 0.55134518790485 1 0.104128539562225 experiment 0.8973096241903 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332227 chr1:22332233 nonsynonymous SNV 0.911 4 27 hm5C_associated_SNPs_23548 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 57bp
chr1 22332233 22332233 1 + C G HNSC 22332228 + 22332208 22332248 41 AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTG AGGGCCCCGAGCAGGTGATCCCCATGAACTCTGAGGAGCTG < 41bp 1 0.214500652130858 1 0.0480100214481354 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332228 chr1:22332233 nonsynonymous SNV 0.911 4 26 hm5C_associated_SNPs_23549 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 79bp
chr1 22332233 22332233 1 + C G HNSC 22332228 + 22332208 22332248 41 AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTG AGGGCCCCGAGCAGGTGATCCCCATGAACTCTGAGGAGCTG < 41bp 1 0.214500652130858 1 0.0480100214481354 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332228 chr1:22332233 nonsynonymous SNV 0.911 4 26 hm5C_associated_SNPs_23549 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 57bp
chr1 22332233 22332233 1 + C G HNSC 22332229 + 22332209 22332249 41 GGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGT GGGCCCCGAGCAGGTGATCCCCATGAACTCTGAGGAGCTGT < 41bp 1 0.215340608834583 1 0.203267008066177 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332229 chr1:22332233 nonsynonymous SNV 0.911 4 25 hm5C_associated_SNPs_23550 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 79bp
chr1 22332233 22332233 1 + C G HNSC 22332229 + 22332209 22332249 41 GGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGT GGGCCCCGAGCAGGTGATCCCCATGAACTCTGAGGAGCTGT < 41bp 1 0.215340608834583 1 0.203267008066177 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332229 chr1:22332233 nonsynonymous SNV 0.911 4 25 hm5C_associated_SNPs_23550 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 57bp
chr1 22332233 22332233 1 + C G HNSC 22332230 + 22332210 22332250 41 GGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTT GGCCCCGAGCAGGTGATCCCCATGAACTCTGAGGAGCTGTT < 41bp 1 0.623206373148099 1 0.356407225131989 experiment 0.753587253703802 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332230 chr1:22332233 nonsynonymous SNV 0.911 4 24 hm5C_associated_SNPs_23551 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 79bp
chr1 22332233 22332233 1 + C G HNSC 22332230 + 22332210 22332250 41 GGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTT GGCCCCGAGCAGGTGATCCCCATGAACTCTGAGGAGCTGTT < 41bp 1 0.623206373148099 1 0.356407225131989 experiment 0.753587253703802 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332230 chr1:22332233 nonsynonymous SNV 0.911 4 24 hm5C_associated_SNPs_23551 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 57bp
chr1 22332233 22332233 1 + C G HNSC 22332236 + 22332216 22332256 41 GAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGTGCA GAGCAGGTGATCCCCATGAACTCTGAGGAGCTGTTTGTGCA < 41bp 1 0.576169350881702 1 0.16187971830368 experiment 0.847661298236596 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332236 chr1:22332233 nonsynonymous SNV 0.911 4 18 hm5C_associated_SNPs_23552 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 79bp
chr1 22332233 22332233 1 + C G HNSC 22332236 + 22332216 22332256 41 GAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGTGCA GAGCAGGTGATCCCCATGAACTCTGAGGAGCTGTTTGTGCA < 41bp 1 0.576169350881702 1 0.16187971830368 experiment 0.847661298236596 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332236 chr1:22332233 nonsynonymous SNV 0.911 4 18 hm5C_associated_SNPs_23552 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 57bp
chr1 22332233 22332233 1 + C G HNSC 22332246 + 22332226 22332266 41 TCCCCATCAACTCTGAGGAGCTGTTTGTGCATCCACTCTGG TCCCCATGAACTCTGAGGAGCTGTTTGTGCATCCACTCTGG < 41bp 1 0.272522375645643 1 0.116419166326523 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332246 chr1:22332233 nonsynonymous SNV 0.911 4 8 hm5C_associated_SNPs_23553 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 79bp
chr1 22332233 22332233 1 + C G HNSC 22332246 + 22332226 22332266 41 TCCCCATCAACTCTGAGGAGCTGTTTGTGCATCCACTCTGG TCCCCATGAACTCTGAGGAGCTGTTTGTGCATCCACTCTGG < 41bp 1 0.272522375645643 1 0.116419166326523 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332246 chr1:22332233 nonsynonymous SNV 0.911 4 8 hm5C_associated_SNPs_23553 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 57bp
chr10 51863892 51863892 1 + G A HNSC 51863880 + 51863860 51863900 41 AGCTCCCCACGTTGGTTTCCCTGTTTGATGATGAAGATGAA AGCTCCCCACGTTGGTTTCCCTGTTTGATGATAAAGATGAA < 41bp 1 0.124779778964558 1 0.227379411458969 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WASHC2A ENSG00000099290 CDS Human protein_coding chr10:51863880 chr10:51863892 nonsynonymous SNV 0.997 3 33 hm5C_associated_SNPs_23554 0 0 0 0 2 WASHC2A chr10:51863802 3'AG 51863802 Downstream 91bp
chr10 51863892 51863892 1 + G A HNSC 51863880 + 51863860 51863900 41 AGCTCCCCACGTTGGTTTCCCTGTTTGATGATGAAGATGAA AGCTCCCCACGTTGGTTTCCCTGTTTGATGATAAAGATGAA < 41bp 1 0.124779778964558 1 0.227379411458969 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WASHC2A ENSG00000099290 CDS Human protein_coding chr10:51863880 chr10:51863892 nonsynonymous SNV 0.997 3 33 hm5C_associated_SNPs_23554 0 0 0 0 2 WASHC2A chr10:51863903 5'GT 51863903 Upstream 12bp
chr1 233482347 233482347 1 + C G HNSC 233482335 + 233482315 233482355 41 GGCCCCCGAAGTGATCAAGTCTTCCTTGTTTTCTAAGGGAA GGCCCCCGAAGTGATCAAGTCTTCCTTGTTTTGTAAGGGAA < 41bp 1 0.139125460180242 1 0.116422474384308 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233482335 chr1:233482347 nonsynonymous SNV 0.994 5 33 hm5C_associated_SNPs_23555 0 0 1 0 1 MAP3K21 chr1:233482368 5'GT 233482368 Upstream 22bp
chr6 142519629 142519629 1 + C G HNSC 142519636 + 142519616 142519656 41 CACTCAGCCAACTCAGCCATCATCATCTTCAACTTATGACC CACTCAGCCAACTGAGCCATCATCATCTTCAACTTATGACC < 41bp 1 0.574335197454975 1 0.217449486255646 experiment 0.85132960509005 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient VTA1 ENSG00000009844 CDS Human protein_coding chr6:142519636 chr6:142519629 nonsynonymous SNV 0.997 0 14 hm5C_associated_SNPs_23569 0 0 1 0 1 VTA1 chr6:142519576 3'AG 142519576 Downstream 54bp
chr12 6979496 6979496 1 + T C HNSC 6979504 + 6979484 6979524 41 CTTCCTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGG CTTCCTTGTGGGCGGTGCTTCCCTCAAGCCCGAATTCGTGG < 41bp 1 0.131280406712829 1 0.0333411395549774 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979504 chr12:6979496 synonymous SNV . 0 13 hm5C_associated_SNPs_23570 0 0 1 0 1 TPI1 chr12:6979429 3'AG 6979429 Downstream 68bp
chr12 6979496 6979496 1 + T C HNSC 6979508 + 6979488 6979528 41 CTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGGACAT CTTGTGGGCGGTGCTTCCCTCAAGCCCGAATTCGTGGACAT < 41bp 1 0.589081321775144 1 0.899112462997437 experiment 0.821837356449711 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979508 chr12:6979496 synonymous SNV . 0 9 hm5C_associated_SNPs_23571 0 0 1 0 1 TPI1 chr12:6979429 3'AG 6979429 Downstream 68bp
chr1 183495741 183495741 1 + A G HNSC 183495750 + 183495730 183495770 41 GTTATTACAAGAACTGTGTACAGTATTTAATGTAGATTTAC GTTATTACAAGGACTGTGTACAGTATTTAATGTAGATTTAC < 41bp 1 0.295022953000612 1 0.0332200527191162 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMG7 ENSG00000116698 CDS Human protein_coding chr1:183495750 chr1:183495741 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_23572 0 0 1 0 1 SMG7 chr1:183495731 3'AG 183495731 Downstream 11bp
chr1 155106009 155106009 1 + G A HNSC 155106004 + 155105984 155106024 41 CCCATCCACCAGCATGAAGACCGCTGCTTGAGGTTGAAGGT CCCATCCACCAGCATGAAGACCGCTACTTGAGGTTGAAGGT < 41bp 1 0.138362238877611 1 0.180885076522827 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNA1 ENSG00000169242 CDS Human protein_coding chr1:155106004 chr1:155106009 nonsynonymous SNV 0.967 5 26 hm5C_associated_SNPs_23573 0 0 1 0 2 EFNA1 chr1:155105979 3'AG 155105979 Downstream 31bp
chr1 155106009 155106009 1 + G A HNSC 155106004 + 155105984 155106024 41 CCCATCCACCAGCATGAAGACCGCTGCTTGAGGTTGAAGGT CCCATCCACCAGCATGAAGACCGCTACTTGAGGTTGAAGGT < 41bp 1 0.138362238877611 1 0.180885076522827 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNA1 ENSG00000169242 CDS Human protein_coding chr1:155106004 chr1:155106009 nonsynonymous SNV 0.967 5 26 hm5C_associated_SNPs_23573 0 0 1 0 2 EFNA1 chr1:155106044 5'GT 155106044 Upstream 36bp
chr11 117280361 117280361 1 + G A HNSC 117280351 + 117280331 117280371 41 CAGTCGACTCAACCCCGAGTCTCACCTCCCGCAAGATCCAC CAGTCGACTCAACCCCGAGTCTCACCTCCCACAAGATCCAC < 41bp 1 0.169274817379812 1 0.0293587446212769 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP164 ENSG00000110274 CDS Human protein_coding chr11:117280351 chr11:117280361 nonsynonymous SNV 0.000 0 31 hm5C_associated_SNPs_23577 0 0 0 0 1 CEP164 chr11:117280334 3'AG 117280334 Downstream 28bp
chr19 3119235 3119235 1 + G A HNSC 3119221 + 3119201 3119241 41 CAGAACCGGATGGAGGAGAGCAAAGCCCTGTTCCGGACCAT CAGAACCGGATGGAGGAGAGCAAAGCCCTGTTCCAGACCAT < 41bp 1 0.276145022552385 1 0.366033017635345 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GNA11 ENSG00000088256 CDS Human protein_coding chr19:3119221 chr19:3119235 nonsynonymous SNV 0.990 1 35 hm5C_associated_SNPs_23579 0 0 1 0 1 GNA11 chr19:3119204 3'AG 3119204 Downstream 32bp
chr5 65105442 65105442 1 + G A HNSC 65105431 + 65105411 65105451 41 GAAAATTGGGTGTGGGACGTCGATTCCCTCCGAAGATTGTC GAAAATTGGGTGTGGGACGTCGATTCCCTCCAAAGATTGTC < 41bp 1 0.120050253828455 1 0.296836614608765 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLN ENSG00000123213 CDS Human protein_coding chr5:65105431 chr5:65105442 nonsynonymous SNV 0.994 1 32 hm5C_associated_SNPs_23580 0 0 1 0 1 NLN chr5:65105528 5'GT 65105528 Upstream 87bp
chr5 43650623 43650623 1 + T C HNSC 43650617 + 43650597 43650637 41 GGTTGGCACTGATGGGAGGACATTTGTATCCTTCCACAACT GGTTGGCACTGATGGGAGGACATTTGCATCCTTCCACAACT < 41bp 1 0.135141726991381 1 0.0290204286575317 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43650617 chr5:43650623 nonsynonymous SNV 0.994 1 27 hm5C_associated_SNPs_23581 0 0 1 0 2 NNT chr5:43650579 3'AG 43650579 Downstream 45bp
chr5 43650623 43650623 1 + T C HNSC 43650617 + 43650597 43650637 41 GGTTGGCACTGATGGGAGGACATTTGTATCCTTCCACAACT GGTTGGCACTGATGGGAGGACATTTGCATCCTTCCACAACT < 41bp 1 0.135141726991381 1 0.0290204286575317 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43650617 chr5:43650623 nonsynonymous SNV 0.994 1 27 hm5C_associated_SNPs_23581 0 0 1 0 2 NNT chr5:43650689 5'GT 43650689 Upstream 67bp
chr2 9528450 9528450 1 + C T HNSC 9528446 + 9528426 9528466 41 AGTCCCAACCGGCGGGAAGACCGGCCCATCAGCTTCTACCA AGTCCCAACCGGCGGGAAGACCGGTCCATCAGCTTCTACCA < 41bp 1 0.537476092104064 1 0.305991113185883 experiment 0.925047815791872 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ASAP2 ENSG00000151693 CDS Human protein_coding chr2:9528446 chr2:9528450 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_23582 0 0 1 0 1 ASAP2 chr2:9528423 3'AG 9528423 Downstream 28bp
chr14 23070609 23070609 1 + C T HNSC 23070600 + 23070580 23070620 41 GCTGGCTGAGTAGCTGGCTGCCCACGTGGCGCCCCACTTCC GCTGGCTGAGTAGCTGGCTGCCCACGTGGTGCCCCACTTCC < 41bp 1 0.266185667226093 1 0.212364077568054 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23070600 chr14:23070609 nonsynonymous SNV 0.998 1 30 hm5C_associated_SNPs_23584 0 0 1 0 1 ABHD4 chr14:23070572 3'AG 23070572 Downstream 38bp
chr22 46239047 46239047 1 + A G HNSC 46239049 + 46239029 46239069 41 CTGAAATCTACTAGAGACACCCCTAAGCCAGTAAGTACCCT CTGAAATCTACTAGAGACGCCCCTAAGCCAGTAAGTACCCT < 41bp 1 0.122984035735859 1 0.145946681499481 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATXN10 ENSG00000130638 CDS Human protein_coding chr22:46239049 chr22:46239047 nonsynonymous SNV 0.002 0 19 hm5C_associated_SNPs_23586 0 0 1 0 1 ATXN10 chr22:46239058 5'GT 46239058 Upstream 12bp
chr11 57575889 57575889 1 + C T HNSC 57575904 + 57575884 57575924 41 CTCTGCGTCAAGAGAAGGCTCTTTCTGCCATAGCTGACCTC CTCTGTGTCAAGAGAAGGCTCTTTCTGCCATAGCTGACCTC < 41bp 1 0.0903378581723821 1 0.0673407912254333 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57575904 chr11:57575889 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_23587 0 0 1 0 1 CTNND1 chr11:57575862 3'AG 57575862 Downstream 28bp
chr1 26136267 26136267 1 + C T HNSC 26136269 + 26136249 26136289 41 CATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCC CATCATCCTCTCCAAAGATGCCACCCACGTCCGCGACTTCC < 41bp 1 0.0407452325558459 1 0.0585837066173553 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136269 chr1:26136267 synonymous SNV . 0 19 hm5C_associated_SNPs_23588 0 0 1 0 2 SELENON chr1:26136174 3'AG 26136174 Downstream 94bp
chr1 26136267 26136267 1 + C T HNSC 26136269 + 26136249 26136289 41 CATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCC CATCATCCTCTCCAAAGATGCCACCCACGTCCGCGACTTCC < 41bp 1 0.0407452325558459 1 0.0585837066173553 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136269 chr1:26136267 synonymous SNV . 0 19 hm5C_associated_SNPs_23588 0 0 1 0 2 SELENON chr1:26136311 5'GT 26136311 Upstream 45bp
chr1 26136267 26136267 1 + C T HNSC 26136270 + 26136250 26136290 41 ATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCG ATCATCCTCTCCAAAGATGCCACCCACGTCCGCGACTTCCG < 41bp 1 0.173585808931669 1 0.0296973884105682 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136270 chr1:26136267 synonymous SNV . 0 18 hm5C_associated_SNPs_23589 0 0 1 0 2 SELENON chr1:26136174 3'AG 26136174 Downstream 94bp
chr1 26136267 26136267 1 + C T HNSC 26136270 + 26136250 26136290 41 ATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCG ATCATCCTCTCCAAAGATGCCACCCACGTCCGCGACTTCCG < 41bp 1 0.173585808931669 1 0.0296973884105682 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136270 chr1:26136267 synonymous SNV . 0 18 hm5C_associated_SNPs_23589 0 0 1 0 2 SELENON chr1:26136311 5'GT 26136311 Upstream 45bp
chr1 26136267 26136267 1 + C T HNSC 26136273 + 26136253 26136293 41 ATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCT ATCCTCTCCAAAGATGCCACCCACGTCCGCGACTTCCGGCT < 41bp 1 0.11682452025264 1 0.126838862895966 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136273 chr1:26136267 synonymous SNV . 0 15 hm5C_associated_SNPs_23590 0 0 1 0 2 SELENON chr1:26136174 3'AG 26136174 Downstream 94bp
chr1 26136267 26136267 1 + C T HNSC 26136273 + 26136253 26136293 41 ATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCT ATCCTCTCCAAAGATGCCACCCACGTCCGCGACTTCCGGCT < 41bp 1 0.11682452025264 1 0.126838862895966 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136273 chr1:26136267 synonymous SNV . 0 15 hm5C_associated_SNPs_23590 0 0 1 0 2 SELENON chr1:26136311 5'GT 26136311 Upstream 45bp
chr1 26136267 26136267 1 + C T HNSC 26136274 + 26136254 26136294 41 TCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCTC TCCTCTCCAAAGATGCCACCCACGTCCGCGACTTCCGGCTC < 41bp 1 0.507910260727476 1 0.135833889245987 experiment 0.984179478545048 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136274 chr1:26136267 synonymous SNV . 0 14 hm5C_associated_SNPs_23591 0 0 1 0 2 SELENON chr1:26136174 3'AG 26136174 Downstream 94bp
chr1 26136267 26136267 1 + C T HNSC 26136274 + 26136254 26136294 41 TCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCTC TCCTCTCCAAAGATGCCACCCACGTCCGCGACTTCCGGCTC < 41bp 1 0.507910260727476 1 0.135833889245987 experiment 0.984179478545048 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136274 chr1:26136267 synonymous SNV . 0 14 hm5C_associated_SNPs_23591 0 0 1 0 2 SELENON chr1:26136311 5'GT 26136311 Upstream 45bp
chr10 94109493 94109493 1 + A G HNSC 94109496 + 94109476 94109516 41 CAGATCATGTCTCTGCTACTCGAATCTTGTGTGGAGCCCTT CAGATCATGTCTCTGCTGCTCGAATCTTGTGTGGAGCCCTT < 41bp 1 0.339959527243575 1 0.196446180343628 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH5 ENSG00000198060 CDS Human protein_coding chr10:94109496 chr10:94109493 nonsynonymous SNV 0.998 1 18 hm5C_associated_SNPs_23592 0 0 1 0 1 MARCH5 chr10:94109428 3'AG 94109428 Downstream 66bp
chr17 65735667 65735667 1 + G A HNSC 65735673 + 65735653 65735693 41 TTCCTGTACCTGAAGTGTAGCGAAAATGCTACTATGACTCT TTCCTGTACCTGAAATGTAGCGAAAATGCTACTATGACTCT < 41bp 1 0.652290589247688 1 0.687578856945038 experiment 0.695418821504623 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65735673 chr17:65735667 synonymous SNV . 0 15 hm5C_associated_SNPs_23596 0 0 1 0 2 NOL11 chr17:65735632 3'AG 65735632 Downstream 36bp
chr17 65735667 65735667 1 + G A HNSC 65735673 + 65735653 65735693 41 TTCCTGTACCTGAAGTGTAGCGAAAATGCTACTATGACTCT TTCCTGTACCTGAAATGTAGCGAAAATGCTACTATGACTCT < 41bp 1 0.652290589247688 1 0.687578856945038 experiment 0.695418821504623 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65735673 chr17:65735667 synonymous SNV . 0 15 hm5C_associated_SNPs_23596 0 0 1 0 2 NOL11 chr17:65735724 5'GT 65735724 Upstream 58bp
chr20 37144935 37144935 1 + T C HNSC 37144939 + 37144919 37144959 41 GCAAGAATTGAATCAGTATCCCTGCCTTAAACATCTGCCTC GCAAGAATTGAATCAGCATCCCTGCCTTAAACATCTGCCTC < 41bp 1 0.10366367357344 1 0.140672743320465 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37144939 chr20:37144935 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_23597 0 0 1 0 1 RALGAPB chr20:37145013 5'GT 37145013 Upstream 79bp
chr17 4859899 4859899 1 + G A HNSC 4859885 + 4859865 4859905 41 CAGGTGCAAACTGGCTCAGTCTAATGGCTGGGGGGTGATGG CAGGTGCAAACTGGCTCAGTCTAATGGCTGGGGGATGATGG < 41bp 1 0.312665285051515 1 0.13178938627243 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859885 chr17:4859899 nonsynonymous SNV 0.996 4 35 hm5C_associated_SNPs_23599 0 0 1 0 2 ENO3 chr17:4859868 3'AG 4859868 Downstream 32bp
chr17 4859899 4859899 1 + G A HNSC 4859885 + 4859865 4859905 41 CAGGTGCAAACTGGCTCAGTCTAATGGCTGGGGGGTGATGG CAGGTGCAAACTGGCTCAGTCTAATGGCTGGGGGATGATGG < 41bp 1 0.312665285051515 1 0.13178938627243 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859885 chr17:4859899 nonsynonymous SNV 0.996 4 35 hm5C_associated_SNPs_23599 0 0 1 0 2 ENO3 chr17:4859976 5'GT 4859976 Upstream 78bp
chr7 129064949 129064949 1 + A G HNSC 129064943 + 129064923 129064963 41 TTTACAATGCTCCTGAGGGTCGCTATAAGCAGGATGTCTAC TTTACAATGCTCCTGAGGGTCGCTATGAGCAGGATGTCTAC < 41bp 1 0.609728072709574 1 0.764081478118896 experiment 0.780543854580853 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064943 chr7:129064949 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_23606 0 0 0 0 2 AHCYL2 chr7:129064904 3'AG 129064904 Downstream 46bp
chr7 129064949 129064949 1 + A G HNSC 129064943 + 129064923 129064963 41 TTTACAATGCTCCTGAGGGTCGCTATAAGCAGGATGTCTAC TTTACAATGCTCCTGAGGGTCGCTATGAGCAGGATGTCTAC < 41bp 1 0.609728072709574 1 0.764081478118896 experiment 0.780543854580853 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064943 chr7:129064949 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_23606 0 0 0 0 2 AHCYL2 chr7:129064982 5'GT 129064982 Upstream 34bp
chr9 131846992 131846992 1 + T G HNSC 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTCAGCCCTGGATTTGTCATCGTCGGTTTCGTGACCCT < 41bp 1 0.55111534087748 1 0.435487568378448 experiment 0.897769318245041 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131846992 nonsynonymous SNV 0.920 1 14 hm5C_associated_SNPs_23607 0 0 1 0 2 DOLPP1 chr9:131846947 3'AG 131846947 Downstream 46bp
chr9 131846992 131846992 1 + T G HNSC 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTCAGCCCTGGATTTGTCATCGTCGGTTTCGTGACCCT < 41bp 1 0.55111534087748 1 0.435487568378448 experiment 0.897769318245041 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131846992 nonsynonymous SNV 0.920 1 14 hm5C_associated_SNPs_23607 0 0 1 0 2 DOLPP1 chr9:131847047 5'GT 131847047 Upstream 56bp
chr5 128440948 128440948 1 + C T HNSC 128440946 + 128440926 128440966 41 TACCCTAAAGGTCTTGGGAGCACGGTTCAAGAAATTGATTT TACCCTAAAGGTCTTGGGAGCATGGTTCAAGAAATTGATTT < 41bp 1 0.35012795387669 1 0.35261207818985 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128440946 chr5:128440948 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_23609 0 0 1 0 1 ISOC1 chr5:128440878 3'AG 128440878 Downstream 71bp
chr16 3712055 3712055 1 - G A HNSC 3712045 - 3712025 3712065 41 CCTGCGCATGCAGCAGCTGGCCAAGACCCAGGAGGAGCGCG CCTGCGCATGTAGCAGCTGGCCAAGACCCAGGAGGAGCGCG < 41bp 1 0.284871799386461 1 0.306971162557602 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712045 chr16:3712055 stopgain 1.000 1 11 hm5C_associated_SNPs_23610 0 0 1 0 2 TRAP1 chr16:3711988 5'GT 3711988 Upstream 68bp
chr16 3712055 3712055 1 - G A HNSC 3712045 - 3712025 3712065 41 CCTGCGCATGCAGCAGCTGGCCAAGACCCAGGAGGAGCGCG CCTGCGCATGTAGCAGCTGGCCAAGACCCAGGAGGAGCGCG < 41bp 1 0.284871799386461 1 0.306971162557602 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712045 chr16:3712055 stopgain 1.000 1 11 hm5C_associated_SNPs_23610 0 0 1 0 2 TRAP1 chr16:3712133 3'AG 3712133 Downstream 79bp
chr16 3712055 3712055 1 - G A HNSC 3712049 - 3712029 3712069 41 ACTTCCTGCGCATGCAGCAGCTGGCCAAGACCCAGGAGGAG ACTTCCTGCGCATGTAGCAGCTGGCCAAGACCCAGGAGGAG < 41bp 1 0.517694750395805 1 0.788605272769928 experiment 0.964610499208389 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712049 chr16:3712055 stopgain 1.000 1 15 hm5C_associated_SNPs_23611 0 0 1 0 2 TRAP1 chr16:3711988 5'GT 3711988 Upstream 68bp
chr16 3712055 3712055 1 - G A HNSC 3712049 - 3712029 3712069 41 ACTTCCTGCGCATGCAGCAGCTGGCCAAGACCCAGGAGGAG ACTTCCTGCGCATGTAGCAGCTGGCCAAGACCCAGGAGGAG < 41bp 1 0.517694750395805 1 0.788605272769928 experiment 0.964610499208389 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712049 chr16:3712055 stopgain 1.000 1 15 hm5C_associated_SNPs_23611 0 0 1 0 2 TRAP1 chr16:3712133 3'AG 3712133 Downstream 79bp
chr16 3712055 3712055 1 - G A HNSC 3712061 - 3712041 3712081 41 GGGCTGCCCGCCACTTCCTGCGCATGCAGCAGCTGGCCAAG GGGCTGCCCGCCACTTCCTGCGCATGTAGCAGCTGGCCAAG < 41bp 1 0.62276636825412 1 0.0842702090740204 experiment 0.754467263491761 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712061 chr16:3712055 stopgain 1.000 1 27 hm5C_associated_SNPs_23612 0 0 1 0 2 TRAP1 chr16:3711988 5'GT 3711988 Upstream 68bp
chr16 3712055 3712055 1 - G A HNSC 3712061 - 3712041 3712081 41 GGGCTGCCCGCCACTTCCTGCGCATGCAGCAGCTGGCCAAG GGGCTGCCCGCCACTTCCTGCGCATGTAGCAGCTGGCCAAG < 41bp 1 0.62276636825412 1 0.0842702090740204 experiment 0.754467263491761 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712061 chr16:3712055 stopgain 1.000 1 27 hm5C_associated_SNPs_23612 0 0 1 0 2 TRAP1 chr16:3712133 3'AG 3712133 Downstream 79bp
chr16 3712055 3712055 1 - G A HNSC 3712068 - 3712048 3712088 41 GAGATGGGGGCTGCCCGCCACTTCCTGCGCATGCAGCAGCT GAGATGGGGGCTGCCCGCCACTTCCTGCGCATGTAGCAGCT < 41bp 1 0.323443111851471 1 0.627379357814789 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712068 chr16:3712055 stopgain 1.000 1 34 hm5C_associated_SNPs_23613 0 0 1 0 2 TRAP1 chr16:3711988 5'GT 3711988 Upstream 68bp
chr16 3712055 3712055 1 - G A HNSC 3712068 - 3712048 3712088 41 GAGATGGGGGCTGCCCGCCACTTCCTGCGCATGCAGCAGCT GAGATGGGGGCTGCCCGCCACTTCCTGCGCATGTAGCAGCT < 41bp 1 0.323443111851471 1 0.627379357814789 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712068 chr16:3712055 stopgain 1.000 1 34 hm5C_associated_SNPs_23613 0 0 1 0 2 TRAP1 chr16:3712133 3'AG 3712133 Downstream 79bp
chr16 3712055 3712055 1 - G A HNSC 3712074 - 3712054 3712094 41 GTGCTGGAGATGGGGGCTGCCCGCCACTTCCTGCGCATGCA GTGCTGGAGATGGGGGCTGCCCGCCACTTCCTGCGCATGTA < 41bp 1 0.493989227693304 1 0.197330206632614 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712074 chr16:3712055 stopgain 1.000 1 40 hm5C_associated_SNPs_23614 0 0 1 0 2 TRAP1 chr16:3711988 5'GT 3711988 Upstream 68bp
chr16 3712055 3712055 1 - G A HNSC 3712074 - 3712054 3712094 41 GTGCTGGAGATGGGGGCTGCCCGCCACTTCCTGCGCATGCA GTGCTGGAGATGGGGGCTGCCCGCCACTTCCTGCGCATGTA < 41bp 1 0.493989227693304 1 0.197330206632614 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712074 chr16:3712055 stopgain 1.000 1 40 hm5C_associated_SNPs_23614 0 0 1 0 2 TRAP1 chr16:3712133 3'AG 3712133 Downstream 79bp
chr14 102445732 102445732 1 + A G HNSC 102445731 + 102445711 102445751 41 CAGCTCCGGGTCCTTACACTCAGTGAAGACTCGCCCTACGA CAGCTCCGGGTCCTTACACTCGGTGAAGACTCGCCCTACGA < 41bp 1 0.255873689943035 1 0.823917150497437 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102445731 chr14:102445732 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_23615 0 0 1 0 2 DYNC1H1 chr14:102445656 3'AG 102445656 Downstream 77bp
chr14 102445732 102445732 1 + A G HNSC 102445731 + 102445711 102445751 41 CAGCTCCGGGTCCTTACACTCAGTGAAGACTCGCCCTACGA CAGCTCCGGGTCCTTACACTCGGTGAAGACTCGCCCTACGA < 41bp 1 0.255873689943035 1 0.823917150497437 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102445731 chr14:102445732 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_23615 0 0 1 0 2 DYNC1H1 chr14:102445829 5'GT 102445829 Upstream 98bp
chr1 43903291 43903291 1 + C T HNSC 43903277 + 43903257 43903297 41 CTTTCCCAGGCTCCTAGAGACATCCTGCAGTGACCGGCCAT CTTTCCCAGGCTCCTAGAGACATCCTGCAGTGACTGGCCAT < 41bp 1 0.0506767727775506 1 0.0317246913909912 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43903277 chr1:43903291 nonsynonymous SNV 0.923 2 35 hm5C_associated_SNPs_23616 0 0 0 0 1 SZT2 chr1:43903266 3'AG 43903266 Downstream 26bp
chr5 65118660 65118660 1 + G T HNSC 65118652 + 65118632 65118672 41 AATCCTGAAACCTGGGGGATCTCTGGACGGCATGGACATGC AATCCTGAAACCTGGGGGATCTCTGGACTGCATGGACATGC < 41bp 1 0.361363496945878 1 0.189240783452988 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NLN ENSG00000123213 CDS Human protein_coding chr5:65118652 chr5:65118660 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_23617 0 0 1 0 1 NLN chr5:65118609 3'AG 65118609 Downstream 52bp
chr5 176710803 176710803 1 + G A HNSC 176710791 + 176710771 176710811 41 TTCTTTTGGAATTCTAGGACCGAATCATTGATGCTGGTCCC TTCTTTTGGAATTCTAGGACCGAATCATTGATACTGGTCCC < 41bp 1 0.0766587117415199 1 0.241399437189102 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176710791 chr5:176710803 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_23618 0 0 1 0 1 NSD1 chr5:176710788 3'AG 176710788 Downstream 16bp
chr2 71795363 71795363 1 + C A HNSC 71795352 + 71795332 71795372 41 GGGAACTGGGGCACAACGGGCCTCACCTACCCCAAGTTTTC GGGAACTGGGGCACAACGGGCCTCACCTACCACAAGTTTTC < 41bp 1 0.114444542324304 1 0.0980856716632843 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71795352 chr2:71795363 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_23619 0 0 0 0 1 DYSF chr2:71795302 3'AG 71795302 Downstream 62bp
chr16 57485028 57485028 1 + G C HNSC 57485048 + 57485028 57485068 41 GAAGCAGCAGCCTCCCAACTCATTTTCTCAGCAGCATTCTG CAAGCAGCAGCCTCCCAACTCATTTTCTCAGCAGCATTCTG < 41bp 1 0.109742669451532 1 0.0326958000659943 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57485048 chr16:57485028 nonsynonymous SNV 0.993 0 1 hm5C_associated_SNPs_23620 0 0 1 0 2 COQ9 chr16:57484952 3'AG 57484952 Downstream 77bp
chr16 57485028 57485028 1 + G C HNSC 57485048 + 57485028 57485068 41 GAAGCAGCAGCCTCCCAACTCATTTTCTCAGCAGCATTCTG CAAGCAGCAGCCTCCCAACTCATTTTCTCAGCAGCATTCTG < 41bp 1 0.109742669451532 1 0.0326958000659943 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57485048 chr16:57485028 nonsynonymous SNV 0.993 0 1 hm5C_associated_SNPs_23620 0 0 1 0 2 COQ9 chr16:57485120 5'GT 57485120 Upstream 93bp
chr5 102472513 102472513 1 + C T HNSC 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATCAATGACTTGAATATGCAGTATTTCATACAAGATAGG < 41bp 1 0.432244354591953 1 0.164623320102692 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472513 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_23621 0 0 1 2 2 PPIP5K2 chr5:102472436 3'AG 102472436 Downstream 78bp
chr5 102472513 102472513 1 + C T HNSC 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATCAATGACTTGAATATGCAGTATTTCATACAAGATAGG < 41bp 1 0.432244354591953 1 0.164623320102692 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472513 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_23621 0 0 1 2 2 PPIP5K2 chr5:102472526 5'GT 102472526 Upstream 14bp
chr9 2186186 2186186 1 + G A HNSC 2186182 + 2186162 2186202 41 GAAGAGAGTGAGGATGAAAGCAATGAAGAGGAGGAAGAGGA GAAGAGAGTGAGGATGAAAGCAATAAAGAGGAGGAAGAGGA < 41bp 1 0.473999258377491 1 0.238843768835068 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2186182 chr9:2186186 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_23623 0 0 1 0 1 SMARCA2 chr9:2186096 3'AG 2186096 Downstream 91bp
chr17 12016649 12016649 1 + G A HNSC 12016646 + 12016626 12016666 41 TGTGGACTCTATTGCCAAGACAAGAGATGCTGGCTGTAGGC TGTGGACTCTATTGCCAAGACAAAAGATGCTGGCTGTAGGC < 41bp 1 0.791623366918026 1 0.398810565471649 experiment 0.416753266163948 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12016646 chr17:12016649 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_23624 0 0 1 0 2 MAP2K4 chr17:12016550 3'AG 12016550 Downstream 100bp
chr17 12016649 12016649 1 + G A HNSC 12016646 + 12016626 12016666 41 TGTGGACTCTATTGCCAAGACAAGAGATGCTGGCTGTAGGC TGTGGACTCTATTGCCAAGACAAAAGATGCTGGCTGTAGGC < 41bp 1 0.791623366918026 1 0.398810565471649 experiment 0.416753266163948 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12016646 chr17:12016649 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_23624 0 0 1 0 2 MAP2K4 chr17:12016677 5'GT 12016677 Upstream 29bp
chr11 6412670 6412670 1 + G A HNSC 6412678 + 6412658 6412698 41 GTGCAATCTGCTGAAGATAGCACCACCTGCCGTGTGCCAAT GTGCAATCTGCTAAAGATAGCACCACCTGCCGTGTGCCAAT < 41bp 1 0.594073793567355 1 0.229750514030457 experiment 0.81185241286529 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6412678 chr11:6412670 synonymous SNV . 0 13 hm5C_associated_SNPs_23627 0 0 0 1 3 SMPD1 chr11:6412614 3'AG 6412614 Downstream 57bp
chr11 6412670 6412670 1 + G A HNSC 6412678 + 6412658 6412698 41 GTGCAATCTGCTGAAGATAGCACCACCTGCCGTGTGCCAAT GTGCAATCTGCTAAAGATAGCACCACCTGCCGTGTGCCAAT < 41bp 1 0.594073793567355 1 0.229750514030457 experiment 0.81185241286529 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6412678 chr11:6412670 synonymous SNV . 0 13 hm5C_associated_SNPs_23627 0 0 0 1 3 SMPD1 chr11:6412617 3'AG 6412617 Downstream 54bp
chr11 6412670 6412670 1 + G A HNSC 6412678 + 6412658 6412698 41 GTGCAATCTGCTGAAGATAGCACCACCTGCCGTGTGCCAAT GTGCAATCTGCTAAAGATAGCACCACCTGCCGTGTGCCAAT < 41bp 1 0.594073793567355 1 0.229750514030457 experiment 0.81185241286529 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6412678 chr11:6412670 synonymous SNV . 0 13 hm5C_associated_SNPs_23627 0 0 0 1 3 SMPD1 chr11:6412733 5'GT 6412733 Upstream 64bp
chr2 233671332 233671332 1 + C T HNSC 233671347 + 233671327 233671367 41 GGGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATG GGGTTTCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATG < 41bp 1 0.129000723205626 1 0.0683043897151947 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671347 chr2:233671332 nonsynonymous SNV 0.998 5 6 hm5C_associated_SNPs_23628 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 36bp
chr2 233671332 233671332 1 + C T HNSC 233671348 + 233671328 233671368 41 GGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGG GGTTTCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGG < 41bp 1 0.192804414992795 1 0.158861249685287 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671348 chr2:233671332 nonsynonymous SNV 0.998 5 5 hm5C_associated_SNPs_23629 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 36bp
chr2 233671332 233671332 1 + C T HNSC 233671351 + 233671331 233671371 41 TCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAA TTCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAA < 41bp 1 0.0853990043109158 1 0.341053009033203 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671351 chr2:233671332 nonsynonymous SNV 0.998 5 2 hm5C_associated_SNPs_23630 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 36bp
chr19 48220235 48220235 1 + C T HNSC 48220221 + 48220201 48220241 41 GCAACGCCCTCGTCGTGGACCCGGACAAGCCCTTCCGCAAA GCAACGCCCTCGTCGTGGACCCGGACAAGCCCTTTCGCAAA < 41bp 1 0.550963921920719 1 0.564184367656708 experiment 0.898072156158561 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EHD2 ENSG00000024422 CDS Human protein_coding chr19:48220221 chr19:48220235 synonymous SNV . 0 35 hm5C_associated_SNPs_23631 0 0 0 0 1 EHD2 chr19:48220273 5'GT 48220273 Upstream 39bp
chr18 29116340 29116340 1 + C G HNSC 29116350 + 29116330 29116370 41 GTTTCTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAA GTTTCTCCGTGATTGACAAACCACCTGGCATGGCAGAAAAA < 41bp 1 0.134311224427132 1 0.145808339118958 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116350 chr18:29116340 synonymous SNV . 0 11 hm5C_associated_SNPs_23632 0 0 1 0 1 DSG2 chr18:29116392 5'GT 29116392 Upstream 53bp
chr18 29116340 29116340 1 + C G HNSC 29116354 + 29116334 29116374 41 CTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAATGGA CTCCGTGATTGACAAACCACCTGGCATGGCAGAAAAATGGA < 41bp 1 0.461789158323217 1 0.119473367929459 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116354 chr18:29116340 synonymous SNV . 0 7 hm5C_associated_SNPs_23633 0 0 1 0 1 DSG2 chr18:29116392 5'GT 29116392 Upstream 53bp
chr3 47451515 47451515 1 + G A HNSC 47451521 + 47451501 47451541 41 CAGGAGACCCCCCTGAGGAGCTGCGCAGCCTCCCCCCTGAC CAGGAGACCCCCCTAAGGAGCTGCGCAGCCTCCCCCCTGAC < 41bp 1 0.519585501533264 1 0.319505244493484 experiment 0.960828996933472 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47451521 chr3:47451515 nonsynonymous SNV 0.574 3 15 hm5C_associated_SNPs_23635 0 0 1 0 1 PTPN23 chr3:47451418 3'AG 47451418 Downstream 98bp
chr12 8196363 8196363 1 + G A HNSC 8196351 + 8196331 8196371 41 TTTCCCGAAAGAGAAGACACCCTCCAGATGATGATGTAAGT TTTCCCGAAAGAGAAGACACCCTCCAGATGATAATGTAAGT < 41bp 1 0.0181714279093078 1 0.0843708217144012 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXJ2 ENSG00000065970 CDS Human protein_coding chr12:8196351 chr12:8196363 nonsynonymous SNV 0.977 1 33 hm5C_associated_SNPs_23639 0 0 0 0 1 FOXJ2 chr12:8196365 5'GT 8196365 Upstream 3bp
chr14 21963395 21963395 1 + C G HNSC 21963397 + 21963377 21963417 41 TCTTCTCACAGGTTGAGTCTCCTTCTCAGATGGATGTTGAA TCTTCTCACAGGTTGAGTGTCCTTCTCAGATGGATGTTGAA < 41bp 1 0.0185690989811523 1 0.0477499663829803 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOX4 ENSG00000092203 CDS Human protein_coding chr14:21963397 chr14:21963395 nonsynonymous SNV 0.998 1 19 hm5C_associated_SNPs_23640 0 0 1 0 1 TOX4 chr14:21963388 3'AG 21963388 Downstream 8bp
chr14 21963395 21963395 1 + C G HNSC 21963398 + 21963378 21963418 41 CTTCTCACAGGTTGAGTCTCCTTCTCAGATGGATGTTGAAT CTTCTCACAGGTTGAGTGTCCTTCTCAGATGGATGTTGAAT < 41bp 1 0.0903286193412967 1 0.0311934649944305 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOX4 ENSG00000092203 CDS Human protein_coding chr14:21963398 chr14:21963395 nonsynonymous SNV 0.998 1 18 hm5C_associated_SNPs_23641 0 0 1 0 1 TOX4 chr14:21963388 3'AG 21963388 Downstream 8bp
chr1 26883512 26883512 1 + G A HNSC 26883509 + 26883489 26883529 41 AAGCTATACCGTCGTGAGATCAAGCCACCCTTCAAGCCAGC AAGCTATACCGTCGTGAGATCAAACCACCCTTCAAGCCAGC < 41bp 1 0.107808774291026 1 0.337651193141937 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26883509 chr1:26883512 synonymous SNV . 0 24 hm5C_associated_SNPs_23646 0 0 1 0 1 RPS6KA1 chr1:26883489 3'AG 26883489 Downstream 24bp
chr11 46400012 46400012 1 + G T HNSC 46400025 + 46400005 46400045 41 AGGTGAAGAGCTGATTGAGGCTGCCAAGAGGAACGACTTCT AGGTGAATAGCTGATTGAGGCTGCCAAGAGGAACGACTTCT < 41bp 1 0.148853613496753 1 0.0688655972480774 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46400025 chr11:46400012 stopgain 1.000 0 8 hm5C_associated_SNPs_23647 0 0 1 0 2 DGKZ chr11:46400007 3'AG 46400007 Downstream 6bp
chr11 46400012 46400012 1 + G T HNSC 46400025 + 46400005 46400045 41 AGGTGAAGAGCTGATTGAGGCTGCCAAGAGGAACGACTTCT AGGTGAATAGCTGATTGAGGCTGCCAAGAGGAACGACTTCT < 41bp 1 0.148853613496753 1 0.0688655972480774 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46400025 chr11:46400012 stopgain 1.000 0 8 hm5C_associated_SNPs_23647 0 0 1 0 2 DGKZ chr11:46400050 5'GT 46400050 Upstream 39bp
chr16 70575707 70575707 1 + G A HNSC 70575721 + 70575701 70575741 41 TGAGTTGGACAGCCTCTCTCCCATTCTGTTTTGCCAGGTTG TGAGTTAGACAGCCTCTCTCCCATTCTGTTTTGCCAGGTTG < 41bp 1 0.0378802240669931 1 0.0654820203781128 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70575721 chr16:70575707 synonymous SNV . 0 7 hm5C_associated_SNPs_23652 0 0 1 0 1 SF3B3 chr16:70575737 5'GT 70575737 Upstream 31bp
chr8 48874211 48874211 1 + T C HNSC 48874231 + 48874211 48874251 41 TTTCCAGCCCTCCCCAAATGCATTCTTCAGGTGCGTGTCTG CTTCCAGCCCTCCCCAAATGCATTCTTCAGGTGCGTGTCTG < 41bp 1 0.0910876436187767 1 0.0322157442569733 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874231 chr8:48874211 nonsynonymous SNV 0.565 1 1 hm5C_associated_SNPs_23653 0 0 1 0 1 MCM4 chr8:48874240 5'GT 48874240 Upstream 30bp
chr19 15224386 15224386 1 + G A HNSC 15224376 + 15224356 15224396 41 CCTGTCTCCCTTCAGATCCCCGCCTGCCCCGACAATCTCCA CCTGTCTCCCTTCAGATCCCCGCCTGCCCCAACAATCTCCA < 41bp 1 0.239940060997928 1 0.0813676118850708 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15224376 chr19:15224386 nonsynonymous SNV 0.001 0 31 hm5C_associated_SNPs_23654 0 0 1 0 1 SYDE1 chr19:15224371 3'AG 15224371 Downstream 16bp
chr5 21491520 21491520 1 + A G HNSC 21491518 + 21491498 21491538 41 TCAGAAAACAAAGTCGTGGACAACCAGGCTGGGACCCAGGG TCAGAAAACAAAGTCGTGGACAGCCAGGCTGGGACCCAGGG < 41bp 1 0.238487082905927 1 0.123423993587494 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21491518 chr5:21491520 . . 0 23 hm5C_associated_SNPs_23656 0 0 1 0 2 GUSBP1 chr5:21491430 3'AG 21491430 Downstream 91bp
chr5 21491520 21491520 1 + A G HNSC 21491518 + 21491498 21491538 41 TCAGAAAACAAAGTCGTGGACAACCAGGCTGGGACCCAGGG TCAGAAAACAAAGTCGTGGACAGCCAGGCTGGGACCCAGGG < 41bp 1 0.238487082905927 1 0.123423993587494 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21491518 chr5:21491520 . . 0 23 hm5C_associated_SNPs_23656 0 0 1 0 2 GUSBP1 chr5:21491617 5'GT 21491617 Upstream 98bp
chr11 722485 722485 1 + G A HNSC 722478 + 722458 722498 41 TCCCGAGATGCCGTGGACTTCCTGCGCGGCCACCTGGTCCC TCCCGAGATGCCGTGGACTTCCTGCGCAGCCACCTGGTCCC < 41bp 1 0.238250833059072 1 0.0949169397354126 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722478 chr11:722485 nonsynonymous SNV 0.237 2 28 hm5C_associated_SNPs_23657 0 0 1 0 2 EPS8L2 chr11:722401 3'AG 722401 Downstream 85bp
chr11 722485 722485 1 + G A HNSC 722478 + 722458 722498 41 TCCCGAGATGCCGTGGACTTCCTGCGCGGCCACCTGGTCCC TCCCGAGATGCCGTGGACTTCCTGCGCAGCCACCTGGTCCC < 41bp 1 0.238250833059072 1 0.0949169397354126 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722478 chr11:722485 nonsynonymous SNV 0.237 2 28 hm5C_associated_SNPs_23657 0 0 1 0 2 EPS8L2 chr11:722549 5'GT 722549 Upstream 65bp
chr12 27788028 27788028 1 + G C HNSC 27788020 + 27788000 27788040 41 CCCAGATTCAACAGCAGAAACGCTTGTTGAATGGCTTCAGA CCCAGATTCAACAGCAGAAACGCTTGTTCAATGGCTTCAGA < 41bp 1 0.320564714734478 1 0.0701539218425751 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27788020 chr12:27788028 nonsynonymous SNV 0.628 2 29 hm5C_associated_SNPs_23658 0 0 1 0 1 PPFIBP1 chr12:27788048 5'GT 27788048 Upstream 21bp
chr12 104335647 104335647 1 + A T HNSC 104335627 + 104335607 104335647 41 AAGGTGGACTCAGATGATCTCCCCTTGAATGTTTCCCGCGA AAGGTGGACTCAGATGATCTCCCCTTGAATGTTTCCCGCGT < 41bp 1 0.326486273248703 1 0.44223827123642 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104335627 chr12:104335647 nonsynonymous SNV 0.988 4 41 hm5C_associated_SNPs_23659 0 0 1 0 2 HSP90B1 chr12:104335610 3'AG 104335610 Downstream 38bp
chr12 104335647 104335647 1 + A T HNSC 104335627 + 104335607 104335647 41 AAGGTGGACTCAGATGATCTCCCCTTGAATGTTTCCCGCGA AAGGTGGACTCAGATGATCTCCCCTTGAATGTTTCCCGCGT < 41bp 1 0.326486273248703 1 0.44223827123642 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104335627 chr12:104335647 nonsynonymous SNV 0.988 4 41 hm5C_associated_SNPs_23659 0 0 1 0 2 HSP90B1 chr12:104335675 5'GT 104335675 Upstream 29bp
chr12 112229161 112229161 1 + G T HNSC 112229155 + 112229135 112229175 41 ACATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATT ACATTGTGCCTGGATTTGGCCCCACGTCTGGGGCCGCCATT < 41bp 1 0.152524362744852 1 0.0296044051647186 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229155 chr12:112229161 nonsynonymous SNV 0.007 2 27 hm5C_associated_SNPs_23660 0 0 1 0 2 ALDH2 chr12:112229110 3'AG 112229110 Downstream 52bp
chr12 112229161 112229161 1 + G T HNSC 112229155 + 112229135 112229175 41 ACATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATT ACATTGTGCCTGGATTTGGCCCCACGTCTGGGGCCGCCATT < 41bp 1 0.152524362744852 1 0.0296044051647186 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human protein_coding chr12:112229155 chr12:112229161 nonsynonymous SNV 0.007 2 27 hm5C_associated_SNPs_23660 0 0 1 0 2 ALDH2 chr12:112229223 5'GT 112229223 Upstream 63bp
chr12 112229161 112229161 1 + G T HNSC 112229156 + 112229136 112229176 41 CATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTG CATTGTGCCTGGATTTGGCCCCACGTCTGGGGCCGCCATTG < 41bp 1 0.261809412834105 1 0.0599614977836609 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229156 chr12:112229161 nonsynonymous SNV 0.007 2 26 hm5C_associated_SNPs_23661 0 0 1 0 2 ALDH2 chr12:112229110 3'AG 112229110 Downstream 52bp
chr12 112229161 112229161 1 + G T HNSC 112229156 + 112229136 112229176 41 CATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTG CATTGTGCCTGGATTTGGCCCCACGTCTGGGGCCGCCATTG < 41bp 1 0.261809412834105 1 0.0599614977836609 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human protein_coding chr12:112229156 chr12:112229161 nonsynonymous SNV 0.007 2 26 hm5C_associated_SNPs_23661 0 0 1 0 2 ALDH2 chr12:112229223 5'GT 112229223 Upstream 63bp
chr12 112229161 112229161 1 + G T HNSC 112229157 + 112229137 112229177 41 ATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTGC ATTGTGCCTGGATTTGGCCCCACGTCTGGGGCCGCCATTGC < 41bp 1 0.560000932214036 1 0.300073713064194 experiment 0.879998135571928 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229157 chr12:112229161 nonsynonymous SNV 0.007 2 25 hm5C_associated_SNPs_23662 0 0 1 0 2 ALDH2 chr12:112229110 3'AG 112229110 Downstream 52bp
chr12 112229161 112229161 1 + G T HNSC 112229157 + 112229137 112229177 41 ATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTGC ATTGTGCCTGGATTTGGCCCCACGTCTGGGGCCGCCATTGC < 41bp 1 0.560000932214036 1 0.300073713064194 experiment 0.879998135571928 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human protein_coding chr12:112229157 chr12:112229161 nonsynonymous SNV 0.007 2 25 hm5C_associated_SNPs_23662 0 0 1 0 2 ALDH2 chr12:112229223 5'GT 112229223 Upstream 63bp
chr12 112229161 112229161 1 + G T HNSC 112229168 + 112229148 112229188 41 ATTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGG ATTTGGCCCCACGTCTGGGGCCGCCATTGCCTCCCATGAGG < 41bp 1 0.150466876205632 1 0.0572701096534729 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229168 chr12:112229161 nonsynonymous SNV 0.007 2 14 hm5C_associated_SNPs_23663 0 0 1 0 2 ALDH2 chr12:112229110 3'AG 112229110 Downstream 52bp
chr12 112229161 112229161 1 + G T HNSC 112229168 + 112229148 112229188 41 ATTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGG ATTTGGCCCCACGTCTGGGGCCGCCATTGCCTCCCATGAGG < 41bp 1 0.150466876205632 1 0.0572701096534729 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human protein_coding chr12:112229168 chr12:112229161 nonsynonymous SNV 0.007 2 14 hm5C_associated_SNPs_23663 0 0 1 0 2 ALDH2 chr12:112229223 5'GT 112229223 Upstream 63bp
chr12 112229161 112229161 1 + G T HNSC 112229169 + 112229149 112229189 41 TTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGGA TTTGGCCCCACGTCTGGGGCCGCCATTGCCTCCCATGAGGA < 41bp 1 0.695657192659609 1 0.312583863735199 experiment 0.608685614680782 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229169 chr12:112229161 nonsynonymous SNV 0.007 2 13 hm5C_associated_SNPs_23664 0 0 1 0 2 ALDH2 chr12:112229110 3'AG 112229110 Downstream 52bp
chr12 112229161 112229161 1 + G T HNSC 112229169 + 112229149 112229189 41 TTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGGA TTTGGCCCCACGTCTGGGGCCGCCATTGCCTCCCATGAGGA < 41bp 1 0.695657192659609 1 0.312583863735199 experiment 0.608685614680782 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human protein_coding chr12:112229169 chr12:112229161 nonsynonymous SNV 0.007 2 13 hm5C_associated_SNPs_23664 0 0 1 0 2 ALDH2 chr12:112229223 5'GT 112229223 Upstream 63bp
chr5 131973799 131973799 1 + G A HNSC 131973793 + 131973773 131973813 41 ATATTGAATACATAGAAATACGGTCTGATGCCGATGAAAAT ATATTGAATACATAGAAATACGGTCTAATGCCGATGAAAAT < 41bp 1 0.0878739856598559 1 0.384994029998779 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131973793 chr5:131973799 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_23665 0 0 1 0 1 RAD50 chr5:131973773 3'AG 131973773 Downstream 27bp
chr19 49967959 49967959 1 + A T HNSC 49967942 + 49967922 49967962 41 CCTGCCCGGCTGTCCTGCCTCTCCAAGAACCTGAACTATGA CCTGCCCGGCTGTCCTGCCTCTCCAAGAACCTGAACTTTGA < 41bp 1 0.760659000500626 1 0.957231938838959 experiment 0.478681998998748 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ALDH16A1 ENSG00000161618 CDS Human other chr19:49967942 chr19:49967959 nonsynonymous SNV 0.797 2 38 hm5C_associated_SNPs_23668 0 0 0 0 2 ALDH16A1 chr19:49967889 3'AG 49967889 Downstream 71bp
chr19 49967959 49967959 1 + A T HNSC 49967942 + 49967922 49967962 41 CCTGCCCGGCTGTCCTGCCTCTCCAAGAACCTGAACTATGA CCTGCCCGGCTGTCCTGCCTCTCCAAGAACCTGAACTTTGA < 41bp 1 0.760659000500626 1 0.957231938838959 experiment 0.478681998998748 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49967942 chr19:49967959 nonsynonymous SNV 0.797 2 38 hm5C_associated_SNPs_23668 0 0 0 0 2 ALDH16A1 chr19:49968019 5'GT 49968019 Upstream 61bp
chr12 132546772 132546772 1 + C T HNSC 132546776 + 132546756 132546796 41 AACGACTCAGGGTGTTCGAGCGGTCACTTCTGTGACAGCCT AACGACTCAGGGTGTTTGAGCGGTCACTTCTGTGACAGCCT < 41bp 1 0.0821868772199644 1 0.501779556274414 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546776 chr12:132546772 stopgain 0.990 1 17 hm5C_associated_SNPs_23669 0 0 1 0 1 EP400 chr12:132546868 5'GT 132546868 Upstream 97bp
chr20 30366776 30366776 1 + A G HNSC 30366771 + 30366751 30366791 41 AACAGATATCATTTGAGGAGCAAGAAGGATGATATTAGTAA AACAGATATCATTTGAGGAGCAAGAGGGATGATATTAGTAA < 41bp 1 0.559487816329075 1 0.432372808456421 experiment 0.88102436734185 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30366771 chr20:30366776 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_23670 0 0 1 0 1 TPX2 chr20:30366787 5'GT 30366787 Upstream 12bp
chr11 557947 557947 1 - G A HNSC 557932 - 557912 557952 41 TGCCTCCTGCAGCTGGCCCGCTCCTCGTGGGTGGGCCGCAT TGCCTTCTGCAGCTGGCCCGCTCCTCGTGGGTGGGCCGCAT < 41bp 1 0.300529055514099 1 0.357796609401703 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMNTD2 ENSG00000185522 CDS Human protein_coding chr11:557932 chr11:557947 synonymous SNV . 0 6 hm5C_associated_SNPs_23672 0 0 0 0 2 LMNTD2 chr11:557884 5'GT 557884 Upstream 64bp
chr11 557947 557947 1 - G A HNSC 557932 - 557912 557952 41 TGCCTCCTGCAGCTGGCCCGCTCCTCGTGGGTGGGCCGCAT TGCCTTCTGCAGCTGGCCCGCTCCTCGTGGGTGGGCCGCAT < 41bp 1 0.300529055514099 1 0.357796609401703 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMNTD2 ENSG00000185522 CDS Human protein_coding chr11:557932 chr11:557947 synonymous SNV . 0 6 hm5C_associated_SNPs_23672 0 0 0 0 2 LMNTD2 chr11:558039 3'AG 558039 Downstream 93bp
chr2 85133166 85133166 1 + G A HNSC 85133155 + 85133135 85133175 41 TAAGAAAATGGCAGACAAACCAGACATGGGGGAAATCGCCA TAAGAAAATGGCAGACAAACCAGACATGGGGAAAATCGCCA < 41bp 1 0.443666571702849 1 0.118658393621445 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMSB10 ENSG00000034510 CDS Human protein_coding chr2:85133155 chr2:85133166 nonsynonymous SNV 0.999 2 32 hm5C_associated_SNPs_23673 0 0 1 0 1 TMSB10 chr2:85133127 3'AG 85133127 Downstream 40bp
chr1 36315806 36315806 1 + A G HNSC 36315787 + 36315767 36315807 41 AGTGGCAATGTACCAGCAGGCACTACAGTGGATAGTACCAT AGTGGCAATGTACCAGCAGGCACTACAGTGGATAGTACCGT < 41bp 1 0.337022420499874 1 0.204346001148224 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AGO4 ENSG00000134698 CDS Human protein_coding chr1:36315787 chr1:36315806 nonsynonymous SNV 0.998 0 40 hm5C_associated_SNPs_23674 0 0 1 0 2 AGO4 chr1:36315758 3'AG 36315758 Downstream 49bp
chr1 36315806 36315806 1 + A G HNSC 36315787 + 36315767 36315807 41 AGTGGCAATGTACCAGCAGGCACTACAGTGGATAGTACCAT AGTGGCAATGTACCAGCAGGCACTACAGTGGATAGTACCGT < 41bp 1 0.337022420499874 1 0.204346001148224 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AGO4 ENSG00000134698 CDS Human protein_coding chr1:36315787 chr1:36315806 nonsynonymous SNV 0.998 0 40 hm5C_associated_SNPs_23674 0 0 1 0 2 AGO4 chr1:36315859 5'GT 36315859 Upstream 54bp
chr1 218504373 218504373 1 + C A HNSC 218504390 + 218504370 218504410 41 GGACAAGGAAAGTGATGGGCCAGATGACAGCAGACCAGAAT GGAAAAGGAAAGTGATGGGCCAGATGACAGCAGACCAGAAT < 41bp 1 0.407971990465249 1 0.575928151607513 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RRP15 ENSG00000067533 CDS Human protein_coding chr1:218504390 chr1:218504373 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_23675 0 0 1 0 1 RRP15 chr1:218504290 3'AG 218504290 Downstream 84bp
chr8 77619832 77619832 1 + G A HNSC 77619825 + 77619805 77619845 41 TCCGGCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCC TCCGGCTTGCCAGTGGTCAGCTAATGGATGATGACCTGTCC < 41bp 1 0.194690388160669 1 0.591627061367035 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77619825 chr8:77619832 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_23676 0 0 0 0 1 ZFHX4 chr8:77619781 3'AG 77619781 Downstream 52bp
chr9 138662904 138662904 1 + G T HNSC 138662890 + 138662870 138662910 41 GGGCCTTCTCGGGGCAGGGGCTGCACGAGGGTCCGGCCCGC GGGCCTTCTCGGGGCAGGGGCTGCACGAGGGTCCTGCCCGC < 41bp 1 0.741856797809974 1 0.777100563049316 experiment 0.516286404380051 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control KCNT1 ENSG00000107147 CDS Human protein_coding chr9:138662890 chr9:138662904 synonymous SNV . 0 35 hm5C_associated_SNPs_23677 0 0 0 0 1 KCNT1 chr9:138662941 5'GT 138662941 Upstream 38bp
chr6 130381238 130381238 1 + G T HNSC 130381222 + 130381202 130381242 41 AAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGCGTGGA AAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGCTTGGA < 41bp 1 0.467675556755397 1 0.280316114425659 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130381222 chr6:130381238 nonsynonymous SNV 0.907 3 37 hm5C_associated_SNPs_23678 0 0 1 0 2 L3MBTL3 chr6:130381181 3'AG 130381181 Downstream 58bp
chr6 130381238 130381238 1 + G T HNSC 130381222 + 130381202 130381242 41 AAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGCGTGGA AAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGCTTGGA < 41bp 1 0.467675556755397 1 0.280316114425659 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130381222 chr6:130381238 nonsynonymous SNV 0.907 3 37 hm5C_associated_SNPs_23678 0 0 1 0 2 L3MBTL3 chr6:130381285 5'GT 130381285 Upstream 48bp
chr12 101012273 101012273 1 + G C HNSC 101012291 + 101012271 101012311 41 TTGAGTTAGAAGAGACTTTGCTTAATACTTCTGGGCCTGAA TTCAGTTAGAAGAGACTTTGCTTAATACTTCTGGGCCTGAA < 41bp 1 0.53754493911855 1 0.428421705961227 experiment 0.9249101217629 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:101012291 chr12:101012273 nonsynonymous SNV 1.000 2 3 hm5C_associated_SNPs_23679 0 0 1 0 2 GAS2L3 chr12:101012227 3'AG 101012227 Downstream 47bp
chr12 101012273 101012273 1 + G C HNSC 101012291 + 101012271 101012311 41 TTGAGTTAGAAGAGACTTTGCTTAATACTTCTGGGCCTGAA TTCAGTTAGAAGAGACTTTGCTTAATACTTCTGGGCCTGAA < 41bp 1 0.53754493911855 1 0.428421705961227 experiment 0.9249101217629 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:101012291 chr12:101012273 nonsynonymous SNV 1.000 2 3 hm5C_associated_SNPs_23679 0 0 1 0 2 GAS2L3 chr12:101012365 5'GT 101012365 Upstream 93bp
chr13 50586100 50586100 1 + C G HNSC 50586083 + 50586063 50586103 41 TCTGGTAGGATGTGATGGAGCTGCTTGAAGAAGATCTCACA TCTGGTAGGATGTGATGGAGCTGCTTGAAGAAGATCTGACA < 41bp 1 0.380396647188502 1 0.0578592717647552 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIM13 ENSG00000204977 CDS Human protein_coding chr13:50586083 chr13:50586100 synonymous SNV . 0 38 hm5C_associated_SNPs_23680 0 0 1 0 1 TRIM13 chr13:50586071 3'AG 50586071 Downstream 30bp
chr11 75508295 75508295 1 + G C HNSC 75508290 + 75508270 75508310 41 CATCATCGTGGTCGGGGGTGCGGCTGAGTCTCTGAGCTCCA CATCATCGTGGTCGGGGGTGCGGCTCAGTCTCTGAGCTCCA < 41bp 1 0.381685210910685 1 0.237920820713043 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75508290 chr11:75508295 nonsynonymous SNV 0.997 4 26 hm5C_associated_SNPs_23681 0 0 1 0 2 DGAT2 chr11:75508203 3'AG 75508203 Downstream 93bp
chr11 75508295 75508295 1 + G C HNSC 75508290 + 75508270 75508310 41 CATCATCGTGGTCGGGGGTGCGGCTGAGTCTCTGAGCTCCA CATCATCGTGGTCGGGGGTGCGGCTCAGTCTCTGAGCTCCA < 41bp 1 0.381685210910685 1 0.237920820713043 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75508290 chr11:75508295 nonsynonymous SNV 0.997 4 26 hm5C_associated_SNPs_23681 0 0 1 0 2 DGAT2 chr11:75508377 5'GT 75508377 Upstream 83bp
chr3 183882067 183882067 1 + G A HNSC 183882074 + 183882054 183882094 41 GCTGGTGTCAGCTGAGGGCTCACACCCAGACCCAGCCCCCT GCTGGTGTCAGCTAAGGGCTCACACCCAGACCCAGCCCCCT < 41bp 1 0.203788309907946 1 0.0501206815242767 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DVL3 ENSG00000161202 CDS Human protein_coding chr3:183882074 chr3:183882067 nonsynonymous SNV 0.976 2 14 hm5C_associated_SNPs_23683 0 0 1 0 1 DVL3 chr3:183882055 3'AG 183882055 Downstream 13bp
chr17 79080653 79080653 1 + G T HNSC 79080643 + 79080623 79080663 41 CGCCGCCTCCCGGGCCTTCCCCGCCCAGACGGCCAGCGGCT CGCCGCCTCCCGGGCCTTCCCCGCCCAGACTGCCAGCGGCT < 41bp 1 0.395245401309874 1 0.209671437740326 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080643 chr17:79080653 synonymous SNV . 0 31 hm5C_associated_SNPs_23687 0 0 1 0 1 BAIAP2 chr17:79080707 5'GT 79080707 Upstream 55bp
chr17 79080653 79080653 1 + G T HNSC 79080644 + 79080624 79080664 41 GCCGCCTCCCGGGCCTTCCCCGCCCAGACGGCCAGCGGCTT GCCGCCTCCCGGGCCTTCCCCGCCCAGACTGCCAGCGGCTT < 41bp 1 0.540487006069488 1 0.120441198348999 experiment 0.919025987861024 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080644 chr17:79080653 synonymous SNV . 0 30 hm5C_associated_SNPs_23688 0 0 1 0 1 BAIAP2 chr17:79080707 5'GT 79080707 Upstream 55bp
chr15 42579976 42579976 1 + G C HNSC 42579991 + 42579971 42580011 41 GATTTGAAGTTCCGGATGTCCTCACAAGCAAGCCAAGCACT GATTTCAAGTTCCGGATGTCCTCACAAGCAAGCCAAGCACT < 41bp 1 0.226949476822789 1 0.323035955429077 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GANC ENSG00000214013 CDS Human protein_coding chr15:42579991 chr15:42579976 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_23690 0 0 0 0 2 GANC chr15:42579889 3'AG 42579889 Downstream 88bp
chr15 42579976 42579976 1 + G C HNSC 42579991 + 42579971 42580011 41 GATTTGAAGTTCCGGATGTCCTCACAAGCAAGCCAAGCACT GATTTCAAGTTCCGGATGTCCTCACAAGCAAGCCAAGCACT < 41bp 1 0.226949476822789 1 0.323035955429077 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GANC ENSG00000214013 CDS Human protein_coding chr15:42579991 chr15:42579976 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_23690 0 0 0 0 2 GANC chr15:42580016 5'GT 42580016 Upstream 41bp
chr19 34859488 34859488 1 + G T HNSC 34859485 + 34859465 34859505 41 TATATCCTGACCGTAATCCCCAGGGTCGAGCCGTGCTGCAC TATATCCTGACCGTAATCCCCAGTGTCGAGCCGTGCTGCAC < 41bp 1 0.330550036443258 1 0.221190065145493 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34859485 chr19:34859488 nonsynonymous SNV 0.018 3 24 hm5C_associated_SNPs_23691 0 0 1 0 1 GPI chr19:34859488 3'AG 34859488 Downstream 1bp
chr1 183519946 183519946 1 + C G HNSC 183519963 + 183519943 183519983 41 GCTCTCCTCCAACACACAACCATAATTCTGTTCCATTCTCC GCTGTCCTCCAACACACAACCATAATTCTGTTCCATTCTCC < 41bp 1 0.37446648568898 1 0.15685510635376 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMG7 ENSG00000116698 CDS Human protein_coding chr1:183519963 chr1:183519946 nonsynonymous SNV 0.999 4 4 hm5C_associated_SNPs_23692 0 0 1 0 1 SMG7 chr1:183519886 3'AG 183519886 Downstream 61bp
chr1 39908187 39908187 1 + G C HNSC 39908204 + 39908184 39908224 41 AGAGACCAATAAGTGGAGACCCAAAAGTCATTGAAGTTGAG AGACACCAATAAGTGGAGACCCAAAAGTCATTGAAGTTGAG < 41bp 1 0.0565123405318971 1 0.256118655204773 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39908204 chr1:39908187 nonsynonymous SNV 0.999 3 4 hm5C_associated_SNPs_23693 0 0 1 0 1 MACF1 chr1:39908239 5'GT 39908239 Upstream 53bp
chr11 67047151 67047151 1 + G C HNSC 67047163 + 67047143 67047183 41 AGAAGCAGGTGCCTCCGGATCTCTTCCAGGTGTGTGCCTCC AGAAGCAGCTGCCTCCGGATCTCTTCCAGGTGTGTGCCTCC < 41bp 1 0.138342751673263 1 0.422125726938248 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67047163 chr11:67047151 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_23695 0 0 1 0 2 GRK2 chr11:67047097 3'AG 67047097 Downstream 55bp
chr11 67047151 67047151 1 + G C HNSC 67047163 + 67047143 67047183 41 AGAAGCAGGTGCCTCCGGATCTCTTCCAGGTGTGTGCCTCC AGAAGCAGCTGCCTCCGGATCTCTTCCAGGTGTGTGCCTCC < 41bp 1 0.138342751673263 1 0.422125726938248 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67047163 chr11:67047151 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_23695 0 0 1 0 2 GRK2 chr11:67047171 5'GT 67047171 Upstream 21bp
chr19 46198710 46198710 1 + C T HNSC 46198713 + 46198693 46198733 41 AGTTCCTGGAGGCCACGCTGCGGTCCCTGACAGCAGGTTGG AGTTCCTGGAGGCCACGTTGCGGTCCCTGACAGCAGGTTGG < 41bp 1 0.210182962849258 1 0.547072350978851 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPCTL ENSG00000011478 CDS Human protein_coding chr19:46198713 chr19:46198710 synonymous SNV . 0 18 hm5C_associated_SNPs_23696 0 0 1 0 1 QPCTL chr19:46198695 3'AG 46198695 Downstream 16bp
chr14 89069315 89069315 1 + C G HNSC 89069326 + 89069306 89069346 41 CTGCAGCCTCAAACAAGGGACTCAGAGGTCTCCTCCACCCA CTGCAGCCTGAAACAAGGGACTCAGAGGTCTCCTCCACCCA < 41bp 1 0.48757307449876 1 0.169774025678635 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89069326 chr14:89069315 stopgain 1.000 0 10 hm5C_associated_SNPs_23697 0 0 1 0 2 ZC3H14 chr14:89069389 5'GT 89069389 Upstream 75bp
chr14 89069315 89069315 1 + C G HNSC 89069326 + 89069306 89069346 41 CTGCAGCCTCAAACAAGGGACTCAGAGGTCTCCTCCACCCA CTGCAGCCTGAAACAAGGGACTCAGAGGTCTCCTCCACCCA < 41bp 1 0.48757307449876 1 0.169774025678635 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89069326 chr14:89069315 stopgain 1.000 0 10 hm5C_associated_SNPs_23697 0 0 1 0 2 ZC3H14 chr14:89069404 5'GT 89069404 Upstream 90bp
chr1 220279318 220279318 1 + G T HNSC 220279315 + 220279295 220279335 41 TTACCTGCAAATCATGTGACCATGGCAAAAGGAACGGGATT TTACCTGCAAATCATGTGACCATTGCAAAAGGAACGGGATT < 41bp 1 0.0485292740003557 1 0.185761004686356 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IARS2 ENSG00000067704 CDS Human protein_coding chr1:220279315 chr1:220279318 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_23700 0 0 1 0 2 IARS2 chr1:220279233 3'AG 220279233 Downstream 86bp
chr1 220279318 220279318 1 + G T HNSC 220279315 + 220279295 220279335 41 TTACCTGCAAATCATGTGACCATGGCAAAAGGAACGGGATT TTACCTGCAAATCATGTGACCATTGCAAAAGGAACGGGATT < 41bp 1 0.0485292740003557 1 0.185761004686356 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IARS2 ENSG00000067704 CDS Human protein_coding chr1:220279315 chr1:220279318 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_23700 0 0 1 0 2 IARS2 chr1:220279402 5'GT 220279402 Upstream 85bp
chr9 37486777 37486777 1 + C T HNSC 37486792 + 37486772 37486812 41 CCAACCCCAGGAAGAGGAATCAACGGATCCTGGTAAGTGAA CCAACTCCAGGAAGAGGAATCAACGGATCCTGGTAAGTGAA < 41bp 1 0.559878346421916 1 0.721273899078369 experiment 0.880243307156167 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1E ENSG00000137054 CDS Human protein_coding chr9:37486792 chr9:37486777 nonsynonymous SNV 0.917 4 6 hm5C_associated_SNPs_23701 0 0 1 0 2 POLR1E chr9:37486700 3'AG 37486700 Downstream 78bp
chr9 37486777 37486777 1 + C T HNSC 37486792 + 37486772 37486812 41 CCAACCCCAGGAAGAGGAATCAACGGATCCTGGTAAGTGAA CCAACTCCAGGAAGAGGAATCAACGGATCCTGGTAAGTGAA < 41bp 1 0.559878346421916 1 0.721273899078369 experiment 0.880243307156167 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1E ENSG00000137054 CDS Human protein_coding chr9:37486792 chr9:37486777 nonsynonymous SNV 0.917 4 6 hm5C_associated_SNPs_23701 0 0 1 0 2 POLR1E chr9:37486803 5'GT 37486803 Upstream 27bp
chr4 3101073 3101073 1 + G A HNSC 3101067 + 3101047 3101087 41 TTTCTGCTGTGCAGTGATGACGCAGAGTCAGATGTCAGGAT TTTCTGCTGTGCAGTGATGACGCAGAATCAGATGTCAGGAT < 41bp 1 0.378511858584568 1 0.362113922834396 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3101067 chr4:3101073 synonymous SNV . 0 27 hm5C_associated_SNPs_23702 0 0 1 0 2 HTT chr4:3101001 3'AG 3101001 Downstream 73bp
chr4 3101073 3101073 1 + G A HNSC 3101067 + 3101047 3101087 41 TTTCTGCTGTGCAGTGATGACGCAGAGTCAGATGTCAGGAT TTTCTGCTGTGCAGTGATGACGCAGAATCAGATGTCAGGAT < 41bp 1 0.378511858584568 1 0.362113922834396 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3101067 chr4:3101073 synonymous SNV . 0 27 hm5C_associated_SNPs_23702 0 0 1 0 2 HTT chr4:3101121 5'GT 3101121 Upstream 49bp
chr11 73078705 73078705 1 + G T HNSC 73078714 + 73078694 73078734 41 AGGCCTAAAATGCTGGTTATCAGTGGAGGTGATGGCTATGA AGGCCTAAAATTCTGGTTATCAGTGGAGGTGATGGCTATGA < 41bp 1 0.347561733513361 1 0.47732862830162 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73078714 chr11:73078705 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_23703 0 0 0 0 1 ARHGEF17 chr11:73078629 3'AG 73078629 Downstream 77bp
chr1 249210841 249210841 1 + T A HNSC 249210825 + 249210805 249210845 41 GTCATTGCTGGGAGAGGTATCCACTCAAAGGTGAAGTCTGC GTCATTGCTGGGAGAGGTATCCACTCAAAGGTGAAGACTGC < 41bp 1 0.20612735025541 1 0.562894940376282 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249210825 chr1:249210841 nonsynonymous SNV 0.038 0 37 hm5C_associated_SNPs_23704 0 0 0 0 1 PGBD2 chr1:249210801 3'AG 249210801 Downstream 41bp
chr3 12616417 12616417 1 + G C HNSC 12616427 + 12616407 12616447 41 GAGGAGATTTGGGATTCTCTCCAATTGCAATCACACGTACT GAGGAGATTTCGGATTCTCTCCAATTGCAATCACACGTACT < 41bp 1 0.246314245105705 1 0.344011425971985 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MKRN2 ENSG00000075975 CDS Human protein_coding chr3:12616427 chr3:12616417 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_23706 0 0 1 0 1 MKRN2 chr3:12616505 5'GT 12616505 Upstream 89bp
chr9 35389887 35389887 1 + C A HNSC 35389874 + 35389854 35389894 41 ACCTCCAGAGGAACAAGGGCCCAGCATTCGGAACCTGGATT ACCTCCAGAGGAACAAGGGCCCAGCATTCGGAAACTGGATT < 41bp 1 0.0584235889096742 1 0.163974344730377 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UNC13B ENSG00000198722 CDS Human protein_coding chr9:35389874 chr9:35389887 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_23707 0 0 1 0 2 UNC13B chr9:35389843 3'AG 35389843 Downstream 45bp
chr9 35389887 35389887 1 + C A HNSC 35389874 + 35389854 35389894 41 ACCTCCAGAGGAACAAGGGCCCAGCATTCGGAACCTGGATT ACCTCCAGAGGAACAAGGGCCCAGCATTCGGAAACTGGATT < 41bp 1 0.0584235889096742 1 0.163974344730377 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UNC13B ENSG00000198722 CDS Human protein_coding chr9:35389874 chr9:35389887 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_23707 0 0 1 0 2 UNC13B chr9:35389970 5'GT 35389970 Upstream 84bp
chr11 117152363 117152363 1 + G A HNSC 117152351 + 117152331 117152371 41 CATATCCAGTTAGTGAGGAACGGAGCCAAGCTGAGCAGCCT CATATCCAGTTAGTGAGGAACGGAGCCAAGCTAAGCAGCCT < 41bp 1 0.548346804285917 1 0.609443843364716 experiment 0.903306391428166 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152351 chr11:117152363 synonymous SNV . 0 33 hm5C_associated_SNPs_23708 0 0 1 0 2 RNF214 chr11:117152316 3'AG 117152316 Downstream 48bp
chr11 117152363 117152363 1 + G A HNSC 117152351 + 117152331 117152371 41 CATATCCAGTTAGTGAGGAACGGAGCCAAGCTGAGCAGCCT CATATCCAGTTAGTGAGGAACGGAGCCAAGCTAAGCAGCCT < 41bp 1 0.548346804285917 1 0.609443843364716 experiment 0.903306391428166 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152351 chr11:117152363 synonymous SNV . 0 33 hm5C_associated_SNPs_23708 0 0 1 0 2 RNF214 chr11:117152414 5'GT 117152414 Upstream 52bp
chr9 100127991 100127991 1 + G T HNSC 100128003 + 100127983 100128023 41 CTCTGGGAGAGCAGTGAGAACCTGCTGACAGTCGCAGAGGT CTCTGGGATAGCAGTGAGAACCTGCTGACAGTCGCAGAGGT < 41bp 1 0.138071530380686 1 0.354977458715439 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100128003 chr9:100127991 nonsynonymous SNV 0.981 0 9 hm5C_associated_SNPs_23709 0 0 0 1 2 CCDC180 chr9:100127955 3'AG 100127955 Downstream 37bp
chr9 100127991 100127991 1 + G T HNSC 100128003 + 100127983 100128023 41 CTCTGGGAGAGCAGTGAGAACCTGCTGACAGTCGCAGAGGT CTCTGGGATAGCAGTGAGAACCTGCTGACAGTCGCAGAGGT < 41bp 1 0.138071530380686 1 0.354977458715439 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100128003 chr9:100127991 nonsynonymous SNV 0.981 0 9 hm5C_associated_SNPs_23709 0 0 0 1 2 CCDC180 chr9:100128021 5'GT 100128021 Upstream 31bp
chr2 179247226 179247226 1 + C T HNSC 179247214 + 179247194 179247234 41 TGAAGACAACACCAGTGTTGCAGACAATATTTCTCGGCAAA TGAAGACAACACCAGTGTTGCAGACAATATTTTTCGGCAAA < 41bp 1 0.10596168524808 1 0.154042541980743 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179247214 chr2:179247226 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_23710 0 0 1 0 2 OSBPL6 chr2:179247147 3'AG 179247147 Downstream 80bp
chr2 179247226 179247226 1 + C T HNSC 179247214 + 179247194 179247234 41 TGAAGACAACACCAGTGTTGCAGACAATATTTCTCGGCAAA TGAAGACAACACCAGTGTTGCAGACAATATTTTTCGGCAAA < 41bp 1 0.10596168524808 1 0.154042541980743 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179247214 chr2:179247226 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_23710 0 0 1 0 2 OSBPL6 chr2:179247234 5'GT 179247234 Upstream 9bp
chr2 167056284 167056284 1 - C T HNSC 167056285 - 167056265 167056305 41 CCAGGATTGGCCGAATCCTACGTCTAGTCAAAGGAGCAAAG CCAGGATTGGCCGAATCCTACATCTAGTCAAAGGAGCAAAG < 41bp 1 0.143211808756236 1 0.0410421192646027 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SCN9A ENSG00000169432 CDS Human protein_coding chr2:167056285 chr2:167056284 nonsynonymous SNV 0.922 5 22 hm5C_associated_SNPs_23711 0 0 0 0 1 SCN9A chr2:167056374 3'AG 167056374 Downstream 91bp
chr7 150773105 150773105 1 + G A HNSC 150773103 + 150773083 150773123 41 CTGTCTCCGCCCCCCAGGTCCGGACCCTCCGTATGCACCTG CTGTCTCCGCCCCCCAGGTCCGAACCCTCCGTATGCACCTG < 41bp 1 0.179973939365223 1 0.102335602045059 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150773103 chr7:150773105 synonymous SNV . 0 23 hm5C_associated_SNPs_23712 0 0 1 0 1 SLC4A2 chr7:150773100 3'AG 150773100 Downstream 6bp
chr4 1941403 1941403 1 + A G HNSC 1941384 + 1941364 1941404 41 CCAAAATTATTTTACAGCAACGAAAAATCTGTCTGATGCAT CCAAAATTATTTTACAGCAACGAAAAATCTGTCTGATGCGT < 41bp 1 0.233946921917771 1 0.412023961544037 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD2 ENSG00000109685 CDS Human protein_coding chr4:1941384 chr4:1941403 nonsynonymous SNV . 0 40 hm5C_associated_SNPs_23713 0 0 1 0 1 NSD2 chr4:1941381 3'AG 1941381 Downstream 23bp
chr5 176709508 176709508 1 + G T HNSC 176709496 + 176709476 176709516 41 TGAATGAGTATGTGGGTGAGCTTATAGATGAAGAAGAATGC TGAATGAGTATGTGGGTGAGCTTATAGATGAATAAGAATGC < 41bp 1 0.0358735243980727 1 0.0368396937847137 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176709496 chr5:176709508 stopgain 1.000 1 33 hm5C_associated_SNPs_23715 0 0 1 0 1 NSD1 chr5:176709582 5'GT 176709582 Upstream 75bp
chrX 70514351 70514351 1 + G A HNSC 70514364 + 70514344 70514384 41 GACAGATGCAGTGAAGGCTCCTTCCTGCTAACCACGTAAGT GACAGATACAGTGAAGGCTCCTTCCTGCTAACCACGTAAGT < 41bp 1 0.0863675451954383 1 0.0980836749076843 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70514364 chrX:70514351 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_23716 0 0 1 0 1 NONO chrX:70514378 5'GT 70514378 Upstream 28bp
chr17 7160292 7160292 1 + G T HNSC 7160303 + 7160283 7160323 41 ACCCTGGGCGGTACCATGGGCCAGGCCTCGGCCCACATCCT ACCCTGGGCTGTACCATGGGCCAGGCCTCGGCCCACATCCT < 41bp 1 0.434857710798564 1 0.129424393177032 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160303 chr17:7160292 nonsynonymous SNV 0.043 3 10 hm5C_associated_SNPs_23717 0 0 1 0 1 ELP5 chr17:7160357 5'GT 7160357 Upstream 66bp
chr17 7160292 7160292 1 + G T HNSC 7160304 + 7160284 7160324 41 CCCTGGGCGGTACCATGGGCCAGGCCTCGGCCCACATCCTG CCCTGGGCTGTACCATGGGCCAGGCCTCGGCCCACATCCTG < 41bp 1 0.667140184603239 1 0.56186830997467 experiment 0.665719630793522 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160304 chr17:7160292 nonsynonymous SNV 0.043 3 9 hm5C_associated_SNPs_23718 0 0 1 0 1 ELP5 chr17:7160357 5'GT 7160357 Upstream 66bp
chr11 33094117 33094117 1 + G A HNSC 33094103 + 33094083 33094123 41 CAGTCCCTGGGGGACTCAGTCCAGTTCAGAGAGAGCTGGAG CAGTCCCTGGGGGACTCAGTCCAGTTCAGAGAGAACTGGAG < 41bp 1 0.333889639954974 1 0.555554628372192 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33094103 chr11:33094117 synonymous SNV . 0 35 hm5C_associated_SNPs_23720 0 0 0 0 2 TCP11L1 chr11:33094020 3'AG 33094020 Downstream 98bp
chr11 33094117 33094117 1 + G A HNSC 33094103 + 33094083 33094123 41 CAGTCCCTGGGGGACTCAGTCCAGTTCAGAGAGAGCTGGAG CAGTCCCTGGGGGACTCAGTCCAGTTCAGAGAGAACTGGAG < 41bp 1 0.333889639954974 1 0.555554628372192 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33094103 chr11:33094117 synonymous SNV . 0 35 hm5C_associated_SNPs_23720 0 0 0 0 2 TCP11L1 chr11:33094199 5'GT 33094199 Upstream 83bp
chr11 33094117 33094117 1 + G A HNSC 33094118 + 33094098 33094138 41 TCAGTCCAGTTCAGAGAGAGCTGGAGGAAGTTGCTATTAAA TCAGTCCAGTTCAGAGAGAACTGGAGGAAGTTGCTATTAAA < 41bp 1 0.793975566071773 1 0.616592705249786 experiment 0.412048867856455 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33094118 chr11:33094117 synonymous SNV . 0 20 hm5C_associated_SNPs_23721 0 0 0 0 2 TCP11L1 chr11:33094020 3'AG 33094020 Downstream 98bp
chr11 33094117 33094117 1 + G A HNSC 33094118 + 33094098 33094138 41 TCAGTCCAGTTCAGAGAGAGCTGGAGGAAGTTGCTATTAAA TCAGTCCAGTTCAGAGAGAACTGGAGGAAGTTGCTATTAAA < 41bp 1 0.793975566071773 1 0.616592705249786 experiment 0.412048867856455 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33094118 chr11:33094117 synonymous SNV . 0 20 hm5C_associated_SNPs_23721 0 0 0 0 2 TCP11L1 chr11:33094199 5'GT 33094199 Upstream 83bp
chr17 30692368 30692368 1 + A T HNSC 30692372 + 30692352 30692392 41 TGCCCCCACCTGTTCCACGTCCTGGAATTCCTCCAATGACT TGCCCCCACCTGTTCCTCGTCCTGGAATTCCTCCAATGACT < 41bp 1 0.270611629895325 1 0.301835119724274 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30692372 chr17:30692368 synonymous SNV . 0 17 hm5C_associated_SNPs_23722 0 0 1 0 1 ZNF207 chr17:30692349 3'AG 30692349 Downstream 20bp
chr17 30692368 30692368 1 + A T HNSC 30692381 + 30692361 30692401 41 CTGTTCCACGTCCTGGAATTCCTCCAATGACTCAAGCACAG CTGTTCCTCGTCCTGGAATTCCTCCAATGACTCAAGCACAG < 41bp 1 0.133093846185874 1 0.447373569011688 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30692381 chr17:30692368 synonymous SNV . 0 8 hm5C_associated_SNPs_23723 0 0 1 0 1 ZNF207 chr17:30692349 3'AG 30692349 Downstream 20bp
chr6 163984541 163984541 1 + C T HNSC 163984557 + 163984537 163984577 41 CCTGCGTACTCCTACGCCAGCTGGCCCTACCATAATGCCTT CCTGTGTACTCCTACGCCAGCTGGCCCTACCATAATGCCTT < 41bp 1 0.391937227859411 1 0.167358607053757 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QKI ENSG00000112531 CDS Human protein_coding chr6:163984557 chr6:163984541 nonsynonymous SNV 0.999 2 5 hm5C_associated_SNPs_23726 0 0 1 0 2 QKI chr6:163984452 3'AG 163984452 Downstream 90bp
chr6 163984541 163984541 1 + C T HNSC 163984557 + 163984537 163984577 41 CCTGCGTACTCCTACGCCAGCTGGCCCTACCATAATGCCTT CCTGTGTACTCCTACGCCAGCTGGCCCTACCATAATGCCTT < 41bp 1 0.391937227859411 1 0.167358607053757 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QKI ENSG00000112531 CDS Human protein_coding chr6:163984557 chr6:163984541 nonsynonymous SNV 0.999 2 5 hm5C_associated_SNPs_23726 0 0 1 0 2 QKI chr6:163984476 3'AG 163984476 Downstream 66bp
chr19 39870622 39870622 1 + A G HNSC 39870630 + 39870610 39870650 41 TCACGGAGACGCAGAAGAAACGGCTGCTATCCTGGAAACAG TCACGGAGACGCGGAAGAAACGGCTGCTATCCTGGAAACAG < 41bp 1 0.728469650241268 1 0.51733535528183 experiment 0.543060699517463 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39870630 chr19:39870622 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_23727 0 0 1 0 1 SAMD4B chr19:39870606 3'AG 39870606 Downstream 17bp
chr11 763813 763813 1 + G A HNSC 763823 + 763803 763843 41 ATTGTCATGGGCGCCTCCTTCCGCAACACGGGCGAGATCAA ATTGTCATGGACGCCTCCTTCCGCAACACGGGCGAGATCAA < 41bp 1 0.758430971140363 1 0.771373271942139 experiment 0.483138057719275 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TALDO1 ENSG00000177156 CDS Human protein_coding chr11:763823 chr11:763813 nonsynonymous SNV 0.999 5 11 hm5C_associated_SNPs_23728 0 0 1 0 1 TALDO1 chr11:763747 3'AG 763747 Downstream 67bp
chr2 162091951 162091951 1 + A G HNSC 162091953 + 162091933 162091973 41 AGTATGTGAATTCTGTCAAGCAGTTTTCCCACCATCCATTA AGTATGTGAATTCTGTCAGGCAGTTTTCCCACCATCCATTA < 41bp 1 0.442820826938938 1 0.0297448337078094 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TANK ENSG00000136560 CDS Human protein_coding chr2:162091953 chr2:162091951 synonymous SNV . 0 19 hm5C_associated_SNPs_23731 0 0 1 0 1 TANK chr2:162091853 3'AG 162091853 Downstream 99bp
chrX 70787355 70787355 1 + G A HNSC 70787359 + 70787339 70787379 41 CCCTATTTTAGATTCTGAAGCGTGTTCCCAATAGTGTACTC CCCTATTTTAGATTCTAAAGCGTGTTCCCAATAGTGTACTC < 41bp 1 0.251349263637792 1 0.078940361738205 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70787359 chrX:70787355 synonymous SNV . 0 17 hm5C_associated_SNPs_23732 0 0 1 0 1 OGT chrX:70787350 3'AG 70787350 Downstream 6bp
chr6 33380521 33380521 1 + G C HNSC 33380523 + 33380503 33380543 41 TTGTGTCTGTCGCTCTGAGACTGTGGTCCCTGGGAACCGGC TTGTGTCTGTCGCTCTGACACTGTGGTCCCTGGGAACCGGC < 41bp 1 0.474828755790475 1 0.0696415305137634 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF1 ENSG00000112511 CDS Human protein_coding chr6:33380523 chr6:33380521 nonsynonymous SNV 0.999 1 19 hm5C_associated_SNPs_23734 0 0 1 0 2 PHF1 chr6:33380475 3'AG 33380475 Downstream 47bp
chr6 33380521 33380521 1 + G C HNSC 33380523 + 33380503 33380543 41 TTGTGTCTGTCGCTCTGAGACTGTGGTCCCTGGGAACCGGC TTGTGTCTGTCGCTCTGACACTGTGGTCCCTGGGAACCGGC < 41bp 1 0.474828755790475 1 0.0696415305137634 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF1 ENSG00000112511 CDS Human protein_coding chr6:33380523 chr6:33380521 nonsynonymous SNV 0.999 1 19 hm5C_associated_SNPs_23734 0 0 1 0 2 PHF1 chr6:33380570 5'GT 33380570 Upstream 50bp
chr12 53849719 53849719 1 + C T HNSC 53849736 + 53849716 53849756 41 TATCACTTTGGCTGGACCCACTAATGCCATCTTCAAAGCCT TATTACTTTGGCTGGACCCACTAATGCCATCTTCAAAGCCT < 41bp 1 0.315226622259773 1 0.104443222284317 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PCBP2 ENSG00000197111 CDS Human protein_coding chr12:53849736 chr12:53849719 synonymous SNV . 0 4 hm5C_associated_SNPs_23735 0 0 1 0 1 PCBP2 chr12:53849785 5'GT 53849785 Upstream 67bp
chr11 9459832 9459832 1 + G A HNSC 9459830 + 9459810 9459850 41 AGCTGAAGATGATGATGAAACCGGTAAGGGATTTTCAATGG AGCTGAAGATGATGATGAAACCAGTAAGGGATTTTCAATGG < 41bp 1 0.442182284424396 1 0.139099270105362 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9459830 chr11:9459832 nonsynonymous SNV 0.717 1 23 hm5C_associated_SNPs_23736 0 0 1 0 1 IPO7 chr11:9459832 5'GT 9459832 Upstream 1bp
chr11 9459832 9459832 1 + G A HNSC 9459831 + 9459811 9459851 41 GCTGAAGATGATGATGAAACCGGTAAGGGATTTTCAATGGA GCTGAAGATGATGATGAAACCAGTAAGGGATTTTCAATGGA < 41bp 1 0.683142427944159 1 0.336188673973083 experiment 0.633715144111682 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9459831 chr11:9459832 nonsynonymous SNV 0.717 1 22 hm5C_associated_SNPs_23737 0 0 1 0 1 IPO7 chr11:9459832 5'GT 9459832 Upstream 1bp
chr7 98609784 98609784 1 + G T HNSC 98609794 + 98609774 98609814 41 TCTCTCGGCCGCCGGGCAGCCAGAGAACATGGACAGCCAGC TCTCTCGGCCTCCGGGCAGCCAGAGAACATGGACAGCCAGC < 41bp 1 0.304777064839248 1 0.889688372612 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98609794 chr7:98609784 nonsynonymous SNV 0.022 1 11 hm5C_associated_SNPs_23739 0 0 1 0 1 TRRAP chr7:98609694 3'AG 98609694 Downstream 91bp
chr16 30960744 30960744 1 + C G HNSC 30960753 + 30960733 30960773 41 CAGTCAGCACTCGCTGCGGGCGCTCAGCTGGCGCCGCCTCT CAGTCAGCACTGGCTGCGGGCGCTCAGCTGGCGCCGCCTCT < 41bp 1 0.158272581162563 1 0.0651813149452209 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ORAI3 ENSG00000175938 CDS Human protein_coding chr16:30960753 chr16:30960744 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_23740 0 0 1 0 1 ORAI3 chr16:30960838 5'GT 30960838 Upstream 95bp
chr16 30960744 30960744 1 + C G HNSC 30960757 + 30960737 30960777 41 CAGCACTCGCTGCGGGCGCTCAGCTGGCGCCGCCTCTACCT CAGCACTGGCTGCGGGCGCTCAGCTGGCGCCGCCTCTACCT < 41bp 1 0.748256647415243 1 0.8041090965271 experiment 0.503486705169514 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ORAI3 ENSG00000175938 CDS Human protein_coding chr16:30960757 chr16:30960744 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_23741 0 0 1 0 1 ORAI3 chr16:30960838 5'GT 30960838 Upstream 95bp
chr2 204053284 204053284 1 + C G HNSC 204053265 + 204053245 204053285 41 TGGCTATAAACAGAGGGGACCAGCTGCAGTAGAGGCACTCA TGGCTATAAACAGAGGGGACCAGCTGCAGTAGAGGCACTGA < 41bp 1 0.140419946274898 1 0.567487001419067 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204053265 chr2:204053284 synonymous SNV . 0 40 hm5C_associated_SNPs_23742 0 0 0 0 2 NBEAL1 chr2:204053195 3'AG 204053195 Downstream 90bp
chr2 204053284 204053284 1 + C G HNSC 204053265 + 204053245 204053285 41 TGGCTATAAACAGAGGGGACCAGCTGCAGTAGAGGCACTCA TGGCTATAAACAGAGGGGACCAGCTGCAGTAGAGGCACTGA < 41bp 1 0.140419946274898 1 0.567487001419067 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204053265 chr2:204053284 synonymous SNV . 0 40 hm5C_associated_SNPs_23742 0 0 0 0 2 NBEAL1 chr2:204053312 5'GT 204053312 Upstream 29bp
chr7 150933597 150933597 1 + G T HNSC 150933611 + 150933591 150933631 41 CCGAAGGTACCCTCATGTACCGGCTCCACAAACGCTTCAGC CCGAAGTTACCCTCATGTACCGGCTCCACAAACGCTTCAGC < 41bp 1 0.325457400831817 1 0.541434347629547 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150933611 chr7:150933597 nonsynonymous SNV 0.990 1 7 hm5C_associated_SNPs_23744 0 0 1 0 1 CHPF2 chr7:150933676 5'GT 150933676 Upstream 80bp
chr7 150933597 150933597 1 + G T HNSC 150933614 + 150933594 150933634 41 AAGGTACCCTCATGTACCGGCTCCACAAACGCTTCAGCGCT AAGTTACCCTCATGTACCGGCTCCACAAACGCTTCAGCGCT < 41bp 1 0.388432688849233 1 0.923477649688721 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150933614 chr7:150933597 nonsynonymous SNV 0.990 1 4 hm5C_associated_SNPs_23745 0 0 1 0 1 CHPF2 chr7:150933676 5'GT 150933676 Upstream 80bp
chr7 150933597 150933597 1 + G T HNSC 150933616 + 150933596 150933636 41 GGTACCCTCATGTACCGGCTCCACAAACGCTTCAGCGCTCT GTTACCCTCATGTACCGGCTCCACAAACGCTTCAGCGCTCT < 41bp 1 0.262814593461245 1 0.16693851351738 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150933616 chr7:150933597 nonsynonymous SNV 0.990 1 2 hm5C_associated_SNPs_23746 0 0 1 0 1 CHPF2 chr7:150933676 5'GT 150933676 Upstream 80bp
chr7 135328051 135328051 1 + A T HNSC 135328068 + 135328048 135328088 41 GACAGAGTGTCAGCAAGCTACAAAATGTAGAGCAGCTTCCC GACTGAGTGTCAGCAAGCTACAAAATGTAGAGCAGCTTCCC < 41bp 1 0.468528112051728 1 0.188907444477081 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135328068 chr7:135328051 nonsynonymous SNV 0.979 1 4 hm5C_associated_SNPs_23748 0 0 1 0 1 NUP205 chr7:135328106 5'GT 135328106 Upstream 56bp
chr9 110073972 110073972 1 + T C HNSC 110073977 + 110073957 110073997 41 TTGTAGTACATCGGGTGATTCTTCTCGGTCAAACCTTTTTG TTGTAGTACATCGGGCGATTCTTCTCGGTCAAACCTTTTTG < 41bp 1 0.153295475594236 1 0.0990540087223053 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD23B ENSG00000119318 CDS Human protein_coding chr9:110073977 chr9:110073972 synonymous SNV . 0 16 hm5C_associated_SNPs_23749 0 0 1 0 2 RAD23B chr9:110073963 3'AG 110073963 Downstream 10bp
chr9 110073972 110073972 1 + T C HNSC 110073977 + 110073957 110073997 41 TTGTAGTACATCGGGTGATTCTTCTCGGTCAAACCTTTTTG TTGTAGTACATCGGGCGATTCTTCTCGGTCAAACCTTTTTG < 41bp 1 0.153295475594236 1 0.0990540087223053 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD23B ENSG00000119318 CDS Human protein_coding chr9:110073977 chr9:110073972 synonymous SNV . 0 16 hm5C_associated_SNPs_23749 0 0 1 0 2 RAD23B chr9:110074018 5'GT 110074018 Upstream 47bp
chr9 131088088 131088088 1 + C G HNSC 131088068 + 131088048 131088088 41 TGCCTTTCAGGGAGCGTCCCCGGATTTCGACATCCACCCTC TGCCTTTCAGGGAGCGTCCCCGGATTTCGACATCCACCCTG < 41bp 1 0.768175233539309 1 0.516229569911957 experiment 0.463649532921382 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COQ4 ENSG00000167113 CDS Human protein_coding chr9:131088068 chr9:131088088 synonymous SNV . 0 41 hm5C_associated_SNPs_23750 0 0 1 0 2 COQ4 chr9:131088058 3'AG 131088058 Downstream 31bp
chr9 131088088 131088088 1 + C G HNSC 131088068 + 131088048 131088088 41 TGCCTTTCAGGGAGCGTCCCCGGATTTCGACATCCACCCTC TGCCTTTCAGGGAGCGTCCCCGGATTTCGACATCCACCCTG < 41bp 1 0.768175233539309 1 0.516229569911957 experiment 0.463649532921382 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COQ4 ENSG00000167113 CDS Human protein_coding chr9:131088068 chr9:131088088 synonymous SNV . 0 41 hm5C_associated_SNPs_23750 0 0 1 0 2 COQ4 chr9:131088160 5'GT 131088160 Upstream 73bp
chr6 30547713 30547713 1 + A G HNSC 30547729 + 30547709 30547749 41 CCGTATCTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAG CCGTGTCTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAG < 41bp 1 0.0692655501069853 1 0.0719242990016937 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30547729 chr6:30547713 synonymous SNV . 0 5 hm5C_associated_SNPs_23752 0 0 1 0 2 ABCF1 chr6:30547708 3'AG 30547708 Downstream 6bp
chr6 30547713 30547713 1 + A G HNSC 30547729 + 30547709 30547749 41 CCGTATCTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAG CCGTGTCTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAG < 41bp 1 0.0692655501069853 1 0.0719242990016937 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30547729 chr6:30547713 synonymous SNV . 0 5 hm5C_associated_SNPs_23752 0 0 1 0 2 ABCF1 chr6:30547782 5'GT 30547782 Upstream 70bp
chr5 86670020 86670020 1 + T A HNSC 86670013 + 86669993 86670033 41 TTTTACATATTGAAGAAGCCCATAAACTCCCAGTAAAACAT TTTTACATATTGAAGAAGCCCATAAACACCCAGTAAAACAT < 41bp 1 0.204349336065802 1 0.206301242113113 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RASA1 ENSG00000145715 CDS Human protein_coding chr5:86670013 chr5:86670020 nonsynonymous SNV 0.998 5 28 hm5C_associated_SNPs_23753 0 0 0 0 1 RASA1 chr5:86669980 3'AG 86669980 Downstream 41bp
chr17 73489130 73489130 1 + G T HNSC 73489149 + 73489129 73489169 41 CGGCGGCCTCCCCTCAGCCACATGATCAGCCTCTTCATTAA CTGCGGCCTCCCCTCAGCCACATGATCAGCCTCTTCATTAA < 41bp 1 0.489856749378713 1 0.109845280647278 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73489149 chr17:73489130 nonsynonymous SNV 0.990 3 2 hm5C_associated_SNPs_23754 0 0 1 0 1 TMEM94 chr17:73489183 5'GT 73489183 Upstream 54bp
chr17 7983186 7983186 1 + C G HNSC 7983202 + 7983182 7983222 41 GGATCAGGCCGGGGTTGACGCCGTTGAGGTACTGGTACCCA GGATGAGGCCGGGGTTGACGCCGTTGAGGTACTGGTACCCA < 41bp 1 0.439066543262344 1 0.325142800807953 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALOX12B ENSG00000179477 CDS Human protein_coding chr17:7983202 chr17:7983186 synonymous SNV . 0 5 hm5C_associated_SNPs_23755 0 0 1 0 1 ALOX12B chr17:7983123 3'AG 7983123 Downstream 64bp
chr1 3342265 3342265 1 + G A HNSC 3342250 + 3342230 3342270 41 AAGTGCCACCTGTGCAACCGCTGCTTCGGGCAGCAGACCAA AAGTGCCACCTGTGCAACCGCTGCTTCGGGCAGCAAACCAA < 41bp 1 0.308748109745866 1 0.318960905075073 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3342250 chr1:3342265 synonymous SNV . 0 36 hm5C_associated_SNPs_23756 0 0 0 0 1 PRDM16 chr1:3342314 5'GT 3342314 Upstream 50bp
chr2 99156097 99156097 1 + C A HNSC 99156084 + 99156064 99156104 41 GATGGCAGAGAGCGTGCTCTCCCTGCACGTGCCCCGGCAGT GATGGCAGAGAGCGTGCTCTCCCTGCACGTGCCACGGCAGT < 41bp 1 0.297370427870052 1 0.810474693775177 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99156084 chr2:99156097 synonymous SNV . 0 34 hm5C_associated_SNPs_23757 0 0 1 0 1 INPP4A chr2:99156138 5'GT 99156138 Upstream 42bp
chr20 60881334 60881334 1 + G T HNSC 60881329 + 60881309 60881349 41 CAACCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCA CAACCCCCCGATGCCTGGGGCGCTGTGGGCCAGCGGAAGCA < 41bp 1 0.216726070605381 1 0.324277430772781 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60881329 chr20:60881334 nonsynonymous SNV 0.062 4 26 hm5C_associated_SNPs_23761 0 0 1 0 2 ADRM1 chr20:60881253 3'AG 60881253 Downstream 82bp
chr20 60881334 60881334 1 + G T HNSC 60881329 + 60881309 60881349 41 CAACCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCA CAACCCCCCGATGCCTGGGGCGCTGTGGGCCAGCGGAAGCA < 41bp 1 0.216726070605381 1 0.324277430772781 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60881329 chr20:60881334 nonsynonymous SNV 0.062 4 26 hm5C_associated_SNPs_23761 0 0 1 0 2 ADRM1 chr20:60881376 5'GT 60881376 Upstream 43bp
chr20 60881334 60881334 1 + G T HNSC 60881331 + 60881311 60881351 41 ACCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCAGC ACCCCCCGATGCCTGGGGCGCTGTGGGCCAGCGGAAGCAGC < 41bp 1 0.463326396668795 1 0.145142734050751 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60881331 chr20:60881334 nonsynonymous SNV 0.062 4 24 hm5C_associated_SNPs_23762 0 0 1 0 2 ADRM1 chr20:60881253 3'AG 60881253 Downstream 82bp
chr20 60881334 60881334 1 + G T HNSC 60881331 + 60881311 60881351 41 ACCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCAGC ACCCCCCGATGCCTGGGGCGCTGTGGGCCAGCGGAAGCAGC < 41bp 1 0.463326396668795 1 0.145142734050751 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60881331 chr20:60881334 nonsynonymous SNV 0.062 4 24 hm5C_associated_SNPs_23762 0 0 1 0 2 ADRM1 chr20:60881376 5'GT 60881376 Upstream 43bp
chr6 144875972 144875972 1 + C G HNSC 144875991 + 144875971 144876011 41 TCTATATTCTTCAGCAAGCCCGACGGGATCCACTCACCAAA TGTATATTCTTCAGCAAGCCCGACGGGATCCACTCACCAAA < 41bp 1 0.225156506534659 1 0.344850599765778 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144875991 chr6:144875972 synonymous SNV . 0 2 hm5C_associated_SNPs_23763 0 0 1 0 1 UTRN chr6:144876029 5'GT 144876029 Upstream 58bp
chr9 100079383 100079383 1 + C G HNSC 100079373 + 100079353 100079393 41 AACTATGCCCTGCTGGGCAACCGGAAGGCTCTCGCCCAGCT AACTATGCCCTGCTGGGCAACCGGAAGGCTGTCGCCCAGCT < 41bp 1 0.656613038600738 1 0.657958030700684 experiment 0.686773922798524 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100079373 chr9:100079383 nonsynonymous SNV 0.956 0 31 hm5C_associated_SNPs_23764 0 0 1 0 1 CCDC180 chr9:100079347 3'AG 100079347 Downstream 37bp
chr5 72187641 72187641 1 + A G HNSC 72187646 + 72187626 72187666 41 ATTGTAAATAGGAATATATTCAGATGCTAATGCCTCCACTG ATTGTAAATAGGAATGTATTCAGATGCTAATGCCTCCACTG < 41bp 1 0.613616301347868 1 0.86452978849411 experiment 0.772767397304263 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187646 chr5:72187641 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_23768 0 0 1 0 2 TNPO1 chr5:72187637 3'AG 72187637 Downstream 5bp
chr5 72187641 72187641 1 + A G HNSC 72187646 + 72187626 72187666 41 ATTGTAAATAGGAATATATTCAGATGCTAATGCCTCCACTG ATTGTAAATAGGAATGTATTCAGATGCTAATGCCTCCACTG < 41bp 1 0.613616301347868 1 0.86452978849411 experiment 0.772767397304263 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187646 chr5:72187641 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_23768 0 0 1 0 2 TNPO1 chr5:72187723 5'GT 72187723 Upstream 83bp
chr5 72187641 72187641 1 + A G HNSC 72187652 + 72187632 72187672 41 AATAGGAATATATTCAGATGCTAATGCCTCCACTGATCCAG AATAGGAATGTATTCAGATGCTAATGCCTCCACTGATCCAG < 41bp 1 0.26745839516255 1 0.0864552855491638 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187652 chr5:72187641 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_23769 0 0 1 0 2 TNPO1 chr5:72187637 3'AG 72187637 Downstream 5bp
chr5 72187641 72187641 1 + A G HNSC 72187652 + 72187632 72187672 41 AATAGGAATATATTCAGATGCTAATGCCTCCACTGATCCAG AATAGGAATGTATTCAGATGCTAATGCCTCCACTGATCCAG < 41bp 1 0.26745839516255 1 0.0864552855491638 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187652 chr5:72187641 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_23769 0 0 1 0 2 TNPO1 chr5:72187723 5'GT 72187723 Upstream 83bp
chr5 72187641 72187641 1 + A G HNSC 72187658 + 72187638 72187678 41 AATATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGG AATGTATTCAGATGCTAATGCCTCCACTGATCCAGAAATGG < 41bp 1 0.0170780230481543 1 0.235787063837051 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187658 chr5:72187641 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_23770 0 0 1 0 2 TNPO1 chr5:72187637 3'AG 72187637 Downstream 5bp
chr5 72187641 72187641 1 + A G HNSC 72187658 + 72187638 72187678 41 AATATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGG AATGTATTCAGATGCTAATGCCTCCACTGATCCAGAAATGG < 41bp 1 0.0170780230481543 1 0.235787063837051 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187658 chr5:72187641 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_23770 0 0 1 0 2 TNPO1 chr5:72187723 5'GT 72187723 Upstream 83bp
chr5 72187641 72187641 1 + A G HNSC 72187659 + 72187639 72187679 41 ATATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGA ATGTATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGA < 41bp 1 0.436256760157826 1 0.890514016151428 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187659 chr5:72187641 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_23771 0 0 1 0 2 TNPO1 chr5:72187637 3'AG 72187637 Downstream 5bp
chr5 72187641 72187641 1 + A G HNSC 72187659 + 72187639 72187679 41 ATATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGA ATGTATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGA < 41bp 1 0.436256760157826 1 0.890514016151428 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187659 chr5:72187641 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_23771 0 0 1 0 2 TNPO1 chr5:72187723 5'GT 72187723 Upstream 83bp
chr5 72187641 72187641 1 + A G HNSC 72187661 + 72187641 72187681 41 ATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAAC GTATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAAC < 41bp 1 0.0883010635645194 1 0.0791474878787994 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187661 chr5:72187641 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_23772 0 0 1 0 2 TNPO1 chr5:72187637 3'AG 72187637 Downstream 5bp
chr5 72187641 72187641 1 + A G HNSC 72187661 + 72187641 72187681 41 ATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAAC GTATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAAC < 41bp 1 0.0883010635645194 1 0.0791474878787994 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187661 chr5:72187641 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_23772 0 0 1 0 2 TNPO1 chr5:72187723 5'GT 72187723 Upstream 83bp
chr22 38209492 38209492 1 + C T HNSC 38209473 + 38209453 38209493 41 TCACTGCCTCCCTCCAGGCCCTGCTGACCCCAGAGGACGCA TCACTGCCTCCCTCCAGGCCCTGCTGACCCCAGAGGACGTA < 41bp 1 0.378983499707573 1 0.0408859550952911 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GCAT ENSG00000100116 CDS Human protein_coding chr22:38209473 chr22:38209492 nonsynonymous SNV 0.344 5 40 hm5C_associated_SNPs_23773 0 0 1 0 1 GCAT chr22:38209470 3'AG 38209470 Downstream 23bp
chr7 150737355 150737355 1 + G T HNSC 150737364 + 150737344 150737384 41 TTTTCTGACAGGTCCATGGCCAACCTCTCTGTCCTGTTTGG TTTTCTGACAGTTCCATGGCCAACCTCTCTGTCCTGTTTGG < 41bp 1 0.124850493265311 1 0.0283587574958801 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150737364 chr7:150737355 nonsynonymous SNV 0.965 2 12 hm5C_associated_SNPs_23774 0 0 1 0 2 ABCB8 chr7:150737355 3'AG 150737355 Downstream 1bp
chr7 150737355 150737355 1 + G T HNSC 150737364 + 150737344 150737384 41 TTTTCTGACAGGTCCATGGCCAACCTCTCTGTCCTGTTTGG TTTTCTGACAGTTCCATGGCCAACCTCTCTGTCCTGTTTGG < 41bp 1 0.124850493265311 1 0.0283587574958801 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150737364 chr7:150737355 nonsynonymous SNV 0.965 2 12 hm5C_associated_SNPs_23774 0 0 1 0 2 ABCB8 chr7:150737388 5'GT 150737388 Upstream 34bp
chr1 109342874 109342874 1 + A G HNSC 109342888 + 109342868 109342908 41 AAAAGAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGA AAAAGAGTGGCCATATTGTTCCCAGTGTCCAGCAGTATGGA < 41bp 1 0.463775317862798 1 0.0179977118968964 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109342888 chr1:109342874 synonymous SNV . 0 7 hm5C_associated_SNPs_23775 0 0 0 0 2 STXBP3 chr1:109342842 3'AG 109342842 Downstream 33bp
chr1 109342874 109342874 1 + A G HNSC 109342888 + 109342868 109342908 41 AAAAGAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGA AAAAGAGTGGCCATATTGTTCCCAGTGTCCAGCAGTATGGA < 41bp 1 0.463775317862798 1 0.0179977118968964 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109342888 chr1:109342874 synonymous SNV . 0 7 hm5C_associated_SNPs_23775 0 0 0 0 2 STXBP3 chr1:109342927 5'GT 109342927 Upstream 54bp
chr1 109342874 109342874 1 + A G HNSC 109342889 + 109342869 109342909 41 AAAGAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGAA AAAGAGTGGCCATATTGTTCCCAGTGTCCAGCAGTATGGAA < 41bp 1 0.394318874480954 1 0.0463108122348785 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109342889 chr1:109342874 synonymous SNV . 0 6 hm5C_associated_SNPs_23776 0 0 0 0 2 STXBP3 chr1:109342842 3'AG 109342842 Downstream 33bp
chr1 109342874 109342874 1 + A G HNSC 109342889 + 109342869 109342909 41 AAAGAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGAA AAAGAGTGGCCATATTGTTCCCAGTGTCCAGCAGTATGGAA < 41bp 1 0.394318874480954 1 0.0463108122348785 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109342889 chr1:109342874 synonymous SNV . 0 6 hm5C_associated_SNPs_23776 0 0 0 0 2 STXBP3 chr1:109342927 5'GT 109342927 Upstream 54bp
chr14 68191267 68191267 1 + C T HNSC 68191265 + 68191245 68191285 41 GTGGTGATCACTGGCGCCAACACGGGCATTGGCAAGGAGAC GTGGTGATCACTGGCGCCAACATGGGCATTGGCAAGGAGAC < 41bp 1 0.57155225442971 1 0.37426769733429 experiment 0.85689549114058 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RDH12 ENSG00000139988 CDS Human protein_coding chr14:68191265 chr14:68191267 nonsynonymous SNV 0.987 5 23 hm5C_associated_SNPs_23778 1 0 0 0 2 RDH12 chr14:68191190 3'AG 68191190 Downstream 78bp
chr14 68191267 68191267 1 + C T HNSC 68191265 + 68191245 68191285 41 GTGGTGATCACTGGCGCCAACACGGGCATTGGCAAGGAGAC GTGGTGATCACTGGCGCCAACATGGGCATTGGCAAGGAGAC < 41bp 1 0.57155225442971 1 0.37426769733429 experiment 0.85689549114058 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RDH12 ENSG00000139988 CDS Human protein_coding chr14:68191265 chr14:68191267 nonsynonymous SNV 0.987 5 23 hm5C_associated_SNPs_23778 1 0 0 0 2 RDH12 chr14:68191308 5'GT 68191308 Upstream 42bp
chr3 184104641 184104641 1 + G A HNSC 184104655 + 184104635 184104675 41 ACGAACGGTGATCTGTGACCCGGTGGTGTGCCCACCGCCCA ACGAACAGTGATCTGTGACCCGGTGGTGTGCCCACCGCCCA < 41bp 1 0.756269317916352 1 0.754326164722443 experiment 0.487461364167297 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CHRD ENSG00000090539 CDS Human protein_coding chr3:184104655 chr3:184104641 synonymous SNV . 0 7 hm5C_associated_SNPs_23780 0 0 1 0 2 CHRD chr3:184104633 3'AG 184104633 Downstream 9bp
chr3 184104641 184104641 1 + G A HNSC 184104655 + 184104635 184104675 41 ACGAACGGTGATCTGTGACCCGGTGGTGTGCCCACCGCCCA ACGAACAGTGATCTGTGACCCGGTGGTGTGCCCACCGCCCA < 41bp 1 0.756269317916352 1 0.754326164722443 experiment 0.487461364167297 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CHRD ENSG00000090539 CDS Human protein_coding chr3:184104655 chr3:184104641 synonymous SNV . 0 7 hm5C_associated_SNPs_23780 0 0 1 0 2 CHRD chr3:184104726 5'GT 184104726 Upstream 86bp
chr17 30321584 30321584 1 + A G HNSC 30321586 + 30321566 30321606 41 TTACATTTTTGTTGCAGTATCATCCAAAAGGTGCTAGGATA TTACATTTTTGTTGCAGTGTCATCCAAAAGGTGCTAGGATA < 41bp 1 0.0775833687547708 1 0.178715616464615 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SUZ12 ENSG00000178691 CDS Human protein_coding chr17:30321586 chr17:30321584 nonsynonymous SNV 0.996 1 19 hm5C_associated_SNPs_23782 0 0 1 0 1 SUZ12 chr17:30321583 3'AG 30321583 Downstream 2bp
chr19 42373230 42373230 1 + G A HNSC 42373215 + 42373195 42373235 41 CAGCCACTTCAGCCGAGGCTCCAAGAGTGTGGCCCGCCGGG CAGCCACTTCAGCCGAGGCTCCAAGAGTGTGGCCCACCGGG < 41bp 1 0.259732072217287 1 0.197692215442657 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373215 chr19:42373230 nonsynonymous SNV 0.966 2 36 hm5C_associated_SNPs_23783 0 0 1 0 1 RPS19 chr19:42373284 5'GT 42373284 Upstream 55bp
chr19 42373230 42373230 1 + G A HNSC 42373228 + 42373208 42373248 41 CGAGGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCT CGAGGCTCCAAGAGTGTGGCCCACCGGGTCCTCCAAGCCCT < 41bp 1 0.17498399727765 1 0.0383783578872681 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373228 chr19:42373230 nonsynonymous SNV 0.966 2 23 hm5C_associated_SNPs_23784 0 0 1 0 1 RPS19 chr19:42373284 5'GT 42373284 Upstream 55bp
chr19 42373230 42373230 1 + G A HNSC 42373231 + 42373211 42373251 41 GGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCTGGA GGCTCCAAGAGTGTGGCCCACCGGGTCCTCCAAGCCCTGGA < 41bp 1 0.656725004053571 1 0.644806385040283 experiment 0.686549991892857 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373231 chr19:42373230 nonsynonymous SNV 0.966 2 20 hm5C_associated_SNPs_23785 0 0 1 0 1 RPS19 chr19:42373284 5'GT 42373284 Upstream 55bp
chr19 42373230 42373230 1 + G A HNSC 42373237 + 42373217 42373257 41 AAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCTGGAGGGGCT AAGAGTGTGGCCCACCGGGTCCTCCAAGCCCTGGAGGGGCT < 41bp 1 0.0428760385724925 1 0.0668787360191345 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373237 chr19:42373230 nonsynonymous SNV 0.966 2 14 hm5C_associated_SNPs_23786 0 0 1 0 1 RPS19 chr19:42373284 5'GT 42373284 Upstream 55bp
chr18 29116334 29116334 1 + C G HNSC 29116350 + 29116330 29116370 41 GTTTCTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAA GTTTGTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAA < 41bp 1 0.140548337161618 1 0.100990951061249 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116350 chr18:29116334 nonsynonymous SNV 0.581 4 5 hm5C_associated_SNPs_23787 0 0 1 0 1 DSG2 chr18:29116392 5'GT 29116392 Upstream 59bp
chr18 29116334 29116334 1 + C G HNSC 29116354 + 29116334 29116374 41 CTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAATGGA GTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAATGGA < 41bp 1 0.474164338837356 1 0.132568359375 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116354 chr18:29116334 nonsynonymous SNV 0.581 4 1 hm5C_associated_SNPs_23788 0 0 1 0 1 DSG2 chr18:29116392 5'GT 29116392 Upstream 59bp
chr17 38512358 38512358 1 + G A HNSC 38512361 + 38512341 38512381 41 GAGGGCCTGGACACTCTGAGCGGACAGCCGGGGGGTGGGGG GAGGGCCTGGACACTCTAAGCGGACAGCCGGGGGGTGGGGG < 41bp 1 0.436069664271756 1 0.710037887096405 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RARA ENSG00000131759 CDS Human protein_coding chr17:38512361 chr17:38512358 synonymous SNV . 0 18 hm5C_associated_SNPs_23789 0 0 1 0 1 RARA chr17:38512261 3'AG 38512261 Downstream 98bp
chr10 75542190 75542190 1 + G C HNSC 75542205 + 75542185 75542225 41 GCCGCGAGGGCTCAGGTGACCGATGGCTCCTGGGGTGCTTT GCCGCCAGGGCTCAGGTGACCGATGGCTCCTGGGGTGCTTT < 41bp 1 0.735014929772123 1 0.723623991012573 experiment 0.529970140455754 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CHCHD1 ENSG00000172586 CDS Human protein_coding chr10:75542205 chr10:75542190 synonymous SNV . 0 6 hm5C_associated_SNPs_23790 0 0 1 0 1 CHCHD1 chr10:75542199 5'GT 75542199 Upstream 10bp
chr12 6635459 6635459 1 + C G HNSC 6635453 + 6635433 6635473 41 CGTTGTCTTGCTCTCCACAGCCTTCTCTGGGCAAACGTCAC CGTTGTCTTGCTCTCCACAGCCTTCTGTGGGCAAACGTCAC < 41bp 1 0.0100541851406095 1 0.0853741466999054 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6635453 chr12:6635459 nonsynonymous SNV 0.873 1 27 hm5C_associated_SNPs_23791 0 0 1 0 2 NCAPD2 chr12:6635453 3'AG 6635453 Downstream 7bp
chr12 6635459 6635459 1 + C G HNSC 6635453 + 6635433 6635473 41 CGTTGTCTTGCTCTCCACAGCCTTCTCTGGGCAAACGTCAC CGTTGTCTTGCTCTCCACAGCCTTCTGTGGGCAAACGTCAC < 41bp 1 0.0100541851406095 1 0.0853741466999054 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6635453 chr12:6635459 nonsynonymous SNV 0.873 1 27 hm5C_associated_SNPs_23791 0 0 1 0 2 NCAPD2 chr12:6635537 5'GT 6635537 Upstream 79bp
chr11 118495765 118495765 1 + C G HNSC 118495754 + 118495734 118495774 41 CAGGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCT CAGGGGGCCGAGCCCCTGGGCCCCCCTACAGGCCTGTTCCT < 41bp 1 0.0883390126769589 1 0.0501334071159363 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495754 chr11:118495765 nonsynonymous SNV 0.392 0 32 hm5C_associated_SNPs_23792 0 0 1 0 1 PHLDB1 chr11:118495775 5'GT 118495775 Upstream 11bp
chr11 118495765 118495765 1 + C G HNSC 118495755 + 118495735 118495775 41 AGGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTG AGGGGGCCGAGCCCCTGGGCCCCCCTACAGGCCTGTTCCTG < 41bp 1 0.116799259550496 1 0.0552924871444702 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495755 chr11:118495765 nonsynonymous SNV 0.392 0 31 hm5C_associated_SNPs_23793 0 0 1 0 1 PHLDB1 chr11:118495775 5'GT 118495775 Upstream 11bp
chr11 118495765 118495765 1 + C G HNSC 118495756 + 118495736 118495776 41 GGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGG GGGGGCCGAGCCCCTGGGCCCCCCTACAGGCCTGTTCCTGG < 41bp 1 0.192099915216118 1 0.149046897888184 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495756 chr11:118495765 nonsynonymous SNV 0.392 0 30 hm5C_associated_SNPs_23794 0 0 1 0 1 PHLDB1 chr11:118495775 5'GT 118495775 Upstream 11bp
chr11 118495765 118495765 1 + C G HNSC 118495757 + 118495737 118495777 41 GGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGGT GGGGCCGAGCCCCTGGGCCCCCCTACAGGCCTGTTCCTGGT < 41bp 1 0.258654245382959 1 0.103819340467453 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495757 chr11:118495765 nonsynonymous SNV 0.392 0 29 hm5C_associated_SNPs_23795 0 0 1 0 1 PHLDB1 chr11:118495775 5'GT 118495775 Upstream 11bp
chr11 118495765 118495765 1 + C G HNSC 118495758 + 118495738 118495778 41 GGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGGTA GGGCCGAGCCCCTGGGCCCCCCTACAGGCCTGTTCCTGGTA < 41bp 1 0.0572200698823861 1 0.512029409408569 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495758 chr11:118495765 nonsynonymous SNV 0.392 0 28 hm5C_associated_SNPs_23796 0 0 1 0 1 PHLDB1 chr11:118495775 5'GT 118495775 Upstream 11bp
chr1 44433317 44433317 1 + G C HNSC 44433322 + 44433302 44433342 41 TCACACTGCTGTGCCGGGGTCTCCATGGCACAGATTACACA TCACACTGCTGTGCCCGGGTCTCCATGGCACAGATTACACA < 41bp 1 0.684718533935874 1 0.904116153717041 experiment 0.630562932128252 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control IPO13 ENSG00000117408 CDS Human protein_coding chr1:44433322 chr1:44433317 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_23797 0 0 1 0 1 IPO13 chr1:44433258 3'AG 44433258 Downstream 60bp
chr2 29006792 29006792 1 + A G HNSC 29006781 + 29006761 29006801 41 TTTTATTTATAGGATTGTCACCAGACCTGCAATCTATGGAG TTTTATTTATAGGATTGTCACCAGACCTGCAGTCTATGGAG < 41bp 1 0.570740027583895 1 0.567758917808533 experiment 0.858519944832211 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1CB ENSG00000213639 CDS Human protein_coding chr2:29006781 chr2:29006792 synonymous SNV . 0 32 hm5C_associated_SNPs_23798 0 0 1 0 2 PPP1CB chr2:29006773 3'AG 29006773 Downstream 20bp
chr2 29006792 29006792 1 + A G HNSC 29006781 + 29006761 29006801 41 TTTTATTTATAGGATTGTCACCAGACCTGCAATCTATGGAG TTTTATTTATAGGATTGTCACCAGACCTGCAGTCTATGGAG < 41bp 1 0.570740027583895 1 0.567758917808533 experiment 0.858519944832211 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1CB ENSG00000213639 CDS Human protein_coding chr2:29006781 chr2:29006792 synonymous SNV . 0 32 hm5C_associated_SNPs_23798 0 0 1 0 2 PPP1CB chr2:29006844 5'GT 29006844 Upstream 53bp
chr17 49247332 49247332 1 + G A HNSC 49247315 + 49247295 49247335 41 GAGGTCTGGGAGGGGCTGAACGTGGTGAAGACAGGCCGAGT GAGGTCTGGGAGGGGCTGAACGTGGTGAAGACAGGCCAAGT < 41bp 1 0.604526814789231 1 0.495444238185883 experiment 0.790946370421539 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49247315 chr17:49247332 nonsynonymous SNV 0.930 3 38 hm5C_associated_SNPs_23799 0 0 1 0 2 NME1-NME2;NME2 chr17:49247298 3'AG 49247298 Downstream 35bp
chr17 49247332 49247332 1 + G A HNSC 49247315 + 49247295 49247335 41 GAGGTCTGGGAGGGGCTGAACGTGGTGAAGACAGGCCGAGT GAGGTCTGGGAGGGGCTGAACGTGGTGAAGACAGGCCAAGT < 41bp 1 0.604526814789231 1 0.495444238185883 experiment 0.790946370421539 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49247315 chr17:49247332 nonsynonymous SNV 0.930 3 38 hm5C_associated_SNPs_23799 0 0 1 0 2 NME1-NME2;NME2 chr17:49247410 5'GT 49247410 Upstream 79bp
chr17 27067575 27067575 1 + C G HNSC 27067581 + 27067561 27067601 41 GTTGTATGTGGTATCGATTCCTCCATGATCCTCACTGTGCC GTTGTATGTGGTATGGATTCCTCCATGATCCTCACTGTGCC < 41bp 1 0.790718711157615 1 0.966020822525024 experiment 0.41856257768477 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NEK8 ENSG00000160602 CDS Human protein_coding chr17:27067581 chr17:27067575 nonsynonymous SNV 0.647 3 15 hm5C_associated_SNPs_23800 0 0 1 0 2 NEK8 chr17:27067481 3'AG 27067481 Downstream 95bp
chr17 27067575 27067575 1 + C G HNSC 27067581 + 27067561 27067601 41 GTTGTATGTGGTATCGATTCCTCCATGATCCTCACTGTGCC GTTGTATGTGGTATGGATTCCTCCATGATCCTCACTGTGCC < 41bp 1 0.790718711157615 1 0.966020822525024 experiment 0.41856257768477 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NEK8 ENSG00000160602 CDS Human protein_coding chr17:27067581 chr17:27067575 nonsynonymous SNV 0.647 3 15 hm5C_associated_SNPs_23800 0 0 1 0 2 NEK8 chr17:27067631 5'GT 27067631 Upstream 57bp
chr7 97833482 97833482 1 + G T HNSC 97833471 + 97833451 97833491 41 CCAGCTTTTCCCTCACACACCTGACCGACTCGGACATCGAG CCAGCTTTTCCCTCACACACCTGACCGACTCTGACATCGAG < 41bp 1 0.162679659302709 1 0.0653347671031952 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97833471 chr7:97833482 synonymous SNV . 0 32 hm5C_associated_SNPs_23801 0 0 0 0 1 LMTK2 chr7:97833498 5'GT 97833498 Upstream 17bp
chr15 74240200 74240200 1 + G T HNSC 74240213 + 74240193 74240233 41 TGCCAGTGGATCGACATAACCGACGTGCAGCCTGGGAACTA TGCCAGTTGATCGACATAACCGACGTGCAGCCTGGGAACTA < 41bp 1 0.68939799786209 1 0.1915502846241 experiment 0.621204004275821 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LOXL1 ENSG00000129038 CDS Human protein_coding chr15:74240213 chr15:74240200 nonsynonymous SNV 0.987 4 8 hm5C_associated_SNPs_23802 0 0 0 0 2 LOXL1 chr15:74240148 3'AG 74240148 Downstream 53bp
chr15 74240200 74240200 1 + G T HNSC 74240213 + 74240193 74240233 41 TGCCAGTGGATCGACATAACCGACGTGCAGCCTGGGAACTA TGCCAGTTGATCGACATAACCGACGTGCAGCCTGGGAACTA < 41bp 1 0.68939799786209 1 0.1915502846241 experiment 0.621204004275821 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LOXL1 ENSG00000129038 CDS Human protein_coding chr15:74240213 chr15:74240200 nonsynonymous SNV 0.987 4 8 hm5C_associated_SNPs_23802 0 0 0 0 2 LOXL1 chr15:74240243 5'GT 74240243 Upstream 44bp
chr11 123474230 123474230 1 + G T HNSC 123474241 + 123474221 123474261 41 CCCCCTGACGACGACTTCAACACAATGGGGTGAGTGAGGCC CCCCCTGACTACGACTTCAACACAATGGGGTGAGTGAGGCC < 41bp 1 0.775344447338684 1 0.463626801967621 experiment 0.449311105322632 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123474241 chr11:123474230 nonsynonymous SNV 0.971 3 10 hm5C_associated_SNPs_23803 0 0 0 0 2 GRAMD1B chr11:123474134 3'AG 123474134 Downstream 97bp
chr11 123474230 123474230 1 + G T HNSC 123474241 + 123474221 123474261 41 CCCCCTGACGACGACTTCAACACAATGGGGTGAGTGAGGCC CCCCCTGACTACGACTTCAACACAATGGGGTGAGTGAGGCC < 41bp 1 0.775344447338684 1 0.463626801967621 experiment 0.449311105322632 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123474241 chr11:123474230 nonsynonymous SNV 0.971 3 10 hm5C_associated_SNPs_23803 0 0 0 0 2 GRAMD1B chr11:123474249 5'GT 123474249 Upstream 20bp
chr2 120124575 120124575 1 + C A HNSC 120124570 + 120124550 120124590 41 GCCAGTGCAATCTGGGCGATCGCTTCCTGGTCCTCGCCTCC GCCAGTGCAATCTGGGCGATCGCTTACTGGTCCTCGCCTCC < 41bp 1 0.284483338962409 1 0.119028300046921 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DBI ENSG00000155368 UTR5 Human protein_coding chr2:120124570 chr2:120124575 . . 0 26 hm5C_associated_SNPs_23804 0 0 1 0 2 DBI chr2:120124636 5'GT 120124636 Upstream 62bp
chr2 120124575 120124575 1 + C A HNSC 120124570 + 120124550 120124590 41 GCCAGTGCAATCTGGGCGATCGCTTCCTGGTCCTCGCCTCC GCCAGTGCAATCTGGGCGATCGCTTACTGGTCCTCGCCTCC < 41bp 1 0.284483338962409 1 0.119028300046921 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DBI ENSG00000155368 UTR5 Human protein_coding chr2:120124570 chr2:120124575 . . 0 26 hm5C_associated_SNPs_23804 0 0 1 0 2 DBI chr2:120124666 5'GT 120124666 Upstream 92bp
chr8 100182343 100182343 1 + C G HNSC 100182330 + 100182310 100182350 41 GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAGC GATCTTACTGCTTACCTGTACCAGTTATTCCCTGTTTCAGC < 41bp 1 0.073191086339573 1 0.120881170034409 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100182330 chr8:100182343 nonsynonymous SNV 0.998 2 34 hm5C_associated_SNPs_23805 0 0 1 0 2 VPS13B chr8:100182267 3'AG 100182267 Downstream 77bp
chr8 100182343 100182343 1 + C G HNSC 100182330 + 100182310 100182350 41 GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAGC GATCTTACTGCTTACCTGTACCAGTTATTCCCTGTTTCAGC < 41bp 1 0.073191086339573 1 0.120881170034409 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100182330 chr8:100182343 nonsynonymous SNV 0.998 2 34 hm5C_associated_SNPs_23805 0 0 1 0 2 VPS13B chr8:100182391 5'GT 100182391 Upstream 49bp
chr1 235600733 235600733 1 + G T HNSC 235600742 + 235600722 235600762 41 AAGCAGAGACGGCGCGACTACTCATTATCGCCAGCATTGGC AAGCAGAGACGTCGCGACTACTCATTATCGCCAGCATTGGC < 41bp 1 0.496784460824425 1 0.0647241473197937 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235600742 chr1:235600733 nonsynonymous SNV 0.001 0 12 hm5C_associated_SNPs_23807 0 0 1 0 1 TBCE chr1:235600637 3'AG 235600637 Downstream 97bp
chrX 9652149 9652149 1 + C T HNSC 9652130 + 9652110 9652150 41 GGATTGAGAGCCACATCAGCCAGTCCAACATCAATGGGACG GGATTGAGAGCCACATCAGCCAGTCCAACATCAATGGGATG < 41bp 1 0.108985744452374 1 0.58643251657486 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBL1X ENSG00000101849 CDS Human protein_coding chrX:9652130 chrX:9652149 nonsynonymous SNV 0.974 2 40 hm5C_associated_SNPs_23809 0 0 0 0 2 TBL1X chrX:9652083 3'AG 9652083 Downstream 67bp
chrX 9652149 9652149 1 + C T HNSC 9652130 + 9652110 9652150 41 GGATTGAGAGCCACATCAGCCAGTCCAACATCAATGGGACG GGATTGAGAGCCACATCAGCCAGTCCAACATCAATGGGATG < 41bp 1 0.108985744452374 1 0.58643251657486 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBL1X ENSG00000101849 CDS Human protein_coding chrX:9652130 chrX:9652149 nonsynonymous SNV 0.974 2 40 hm5C_associated_SNPs_23809 0 0 0 0 2 TBL1X chrX:9652228 5'GT 9652228 Upstream 80bp
chr11 209939 209939 1 + T C HNSC 209927 + 209907 209947 41 GCTCCTTCCTTCCCAAGAGACTGAGCGGGCCATGGAGATCC GCTCCTTCCTTCCCAAGAGACTGAGCGGGCCACGGAGATCC < 41bp 1 0.581217317301734 1 0.334607839584351 experiment 0.837565365396532 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:209927 chr11:209939 nonsynonymous SNV 0.991 2 33 hm5C_associated_SNPs_23812 0 0 1 0 1 RIC8A chr11:210000 5'GT 210000 Upstream 62bp
chr7 142458409 142458409 1 + C T HNSC 142458412 + 142458392 142458432 41 CATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACA CATCTCCACTCCAGTTGTTGCCCCCTTTGATGATGATGACA < 41bp 1 0.0280777780606842 1 0.289799094200134 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458412 chr7:142458409 nonsynonymous SNV 0.112 3 18 hm5C_associated_SNPs_23813 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 4bp
chr7 142458409 142458409 1 + C T HNSC 142458413 + 142458393 142458433 41 ATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAA ATCTCCACTCCAGTTGTTGCCCCCTTTGATGATGATGACAA < 41bp 1 0.0712574568906007 1 0.172885805368423 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458413 chr7:142458409 nonsynonymous SNV 0.112 3 17 hm5C_associated_SNPs_23814 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 4bp
chr7 142458409 142458409 1 + C T HNSC 142458414 + 142458394 142458434 41 TCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAG TCTCCACTCCAGTTGTTGCCCCCTTTGATGATGATGACAAG < 41bp 1 0.030522419714203 1 0.151766628026962 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458414 chr7:142458409 nonsynonymous SNV 0.112 3 16 hm5C_associated_SNPs_23815 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 4bp
chr7 142458409 142458409 1 + C T HNSC 142458415 + 142458395 142458435 41 CTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGA CTCCACTCCAGTTGTTGCCCCCTTTGATGATGATGACAAGA < 41bp 1 0.00284973872535754 1 0.0682011544704437 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458415 chr7:142458409 nonsynonymous SNV 0.112 3 15 hm5C_associated_SNPs_23816 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 4bp
chr7 142458409 142458409 1 + C T HNSC 142458416 + 142458396 142458436 41 TCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGAT TCCACTCCAGTTGTTGCCCCCTTTGATGATGATGACAAGAT < 41bp 1 0.0440464128476645 1 0.0783901214599609 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458416 chr7:142458409 nonsynonymous SNV 0.112 3 14 hm5C_associated_SNPs_23817 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 4bp
chr10 31812948 31812948 1 + C A HNSC 31812931 + 31812911 31812951 41 GAATGACTCTGATTCTACACCGCCCAAAAAGAAAATGCGGA GAATGACTCTGATTCTACACCGCCCAAAAAGAAAATGAGGA < 41bp 1 0.254973306142583 1 0.265950620174408 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZEB1 ENSG00000148516 CDS Human protein_coding chr10:31812931 chr10:31812948 synonymous SNV . 0 38 hm5C_associated_SNPs_23818 0 0 1 0 1 ZEB1 chr10:31812861 3'AG 31812861 Downstream 88bp
chr1 28861634 28861634 1 + G A HNSC 28861637 + 28861617 28861657 41 TGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGCCTCA TGCAGGTGCAGCTGGATATGCCTGTGGTAAAGGTGGCCTCA < 41bp 1 0.357647673457926 1 0.315275281667709 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28861637 chr1:28861634 nonsynonymous SNV 0.015 0 18 hm5C_associated_SNPs_23820 0 0 1 0 2 RCC1 chr1:28861562 3'AG 28861562 Downstream 73bp
chr1 28861634 28861634 1 + G A HNSC 28861637 + 28861617 28861657 41 TGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGCCTCA TGCAGGTGCAGCTGGATATGCCTGTGGTAAAGGTGGCCTCA < 41bp 1 0.357647673457926 1 0.315275281667709 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28861637 chr1:28861634 nonsynonymous SNV 0.015 0 18 hm5C_associated_SNPs_23820 0 0 1 0 2 RCC1 chr1:28861658 5'GT 28861658 Upstream 25bp
chr2 233273006 233273006 1 + G T HNSC 233272995 + 233272975 233273015 41 AGGTGATCCTAGGTGGAGGCCGAAAGTACATGTTTCCCATG AGGTGATCCTAGGTGGAGGCCGAAAGTACATTTTTCCCATG < 41bp 1 0.665446848704857 1 0.366143345832825 experiment 0.669106302590286 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233272995 chr2:233273006 nonsynonymous SNV 0.370 3 32 hm5C_associated_SNPs_23821 0 0 0 0 1 ALPPL2 chr2:233272977 3'AG 233272977 Downstream 30bp
chr1 44878355 44878355 1 + C T HNSC 44878350 + 44878330 44878370 41 TGCTGTCTCTGGCCTCATTTCTGATCGGGAAGCCTCATCTA TGCTGTCTCTGGCCTCATTTCTGATTGGGAAGCCTCATCTA < 41bp 1 0.565309006403463 1 0.798585295677185 experiment 0.869381987193075 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878350 chr1:44878355 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_23822 0 0 1 0 1 RNF220 chr1:44878394 5'GT 44878394 Upstream 40bp
chr1 44878355 44878355 1 + C T HNSC 44878373 + 44878353 44878393 41 ATCGGGAAGCCTCATCTAGCCCAGAGGATCGGAATGACAGA ATTGGGAAGCCTCATCTAGCCCAGAGGATCGGAATGACAGA < 41bp 1 0.506774486382585 1 0.22364404797554 experiment 0.98645102723483 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878373 chr1:44878355 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_23823 0 0 1 0 1 RNF220 chr1:44878394 5'GT 44878394 Upstream 40bp
chr10 94773979 94773979 1 + A G HNSC 94773982 + 94773962 94774002 41 TCTGAGCCTGTGCCAGGATTCCAGGGGGATACCCTGCAGCT TCTGAGCCTGTGCCAGGGTTCCAGGGGGATACCCTGCAGCT < 41bp 1 0.63056989179689 1 0.790661871433258 experiment 0.738860216406221 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control EXOC6 ENSG00000138190 CDS Human protein_coding chr10:94773982 chr10:94773979 synonymous SNV . 0 18 hm5C_associated_SNPs_23824 0 0 1 0 1 EXOC6 chr10:94774024 5'GT 94774024 Upstream 46bp
chr3 184648306 184648306 1 + A T HNSC 184648321 + 184648301 184648341 41 GACACAGTGCAGAGGAGAAGCAGTCTGTATGGCAGAAAGCA GACACTGTGCAGAGGAGAAGCAGTCTGTATGGCAGAAAGCA < 41bp 1 0.103538214369866 1 0.332906037569046 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS8 ENSG00000156931 CDS Human protein_coding chr3:184648321 chr3:184648306 nonsynonymous SNV 0.998 3 6 hm5C_associated_SNPs_23826 0 0 1 0 2 VPS8 chr3:184648258 3'AG 184648258 Downstream 49bp
chr3 184648306 184648306 1 + A T HNSC 184648321 + 184648301 184648341 41 GACACAGTGCAGAGGAGAAGCAGTCTGTATGGCAGAAAGCA GACACTGTGCAGAGGAGAAGCAGTCTGTATGGCAGAAAGCA < 41bp 1 0.103538214369866 1 0.332906037569046 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS8 ENSG00000156931 CDS Human protein_coding chr3:184648321 chr3:184648306 nonsynonymous SNV 0.998 3 6 hm5C_associated_SNPs_23826 0 0 1 0 2 VPS8 chr3:184648356 5'GT 184648356 Upstream 51bp
chr13 24858302 24858302 1 + G T HNSC 24858291 + 24858271 24858311 41 AGTTTCTTCAGATGGAGGTACTGAGCCCTCTGCCTTAGTGG AGTTTCTTCAGATGGAGGTACTGAGCCCTCTTCCTTAGTGG < 41bp 1 0.154201118113062 1 0.323364615440369 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPATA13 ENSG00000182957;ENSG00000273167 CDS Human other chr13:24858291 chr13:24858302 nonsynonymous SNV 0.719 0 32 hm5C_associated_SNPs_23827 0 0 1 0 1 SPATA13 chr13:24858273 3'AG 24858273 Downstream 30bp
chr19 50912134 50912134 1 + G A HNSC 50912125 + 50912105 50912145 41 CCACAACCTGTGTTACACCACGCTCCTTCGGCCCGGGACTG CCACAACCTGTGTTACACCACGCTCCTTCAGCCCGGGACTG < 41bp 1 0.186532658782493 1 0.0524135529994965 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912125 chr19:50912134 nonsynonymous SNV 0.068 0 30 hm5C_associated_SNPs_23828 1 0 1 0 2 POLD1 chr19:50912042 3'AG 50912042 Downstream 93bp
chr19 50912134 50912134 1 + G A HNSC 50912125 + 50912105 50912145 41 CCACAACCTGTGTTACACCACGCTCCTTCGGCCCGGGACTG CCACAACCTGTGTTACACCACGCTCCTTCAGCCCGGGACTG < 41bp 1 0.186532658782493 1 0.0524135529994965 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912125 chr19:50912134 nonsynonymous SNV 0.068 0 30 hm5C_associated_SNPs_23828 1 0 1 0 2 POLD1 chr19:50912158 5'GT 50912158 Upstream 25bp
chr16 46960923 46960923 1 + G A HNSC 46960906 + 46960886 46960926 41 AGACTGGCATCTGTGTCGTGCCCGGCAGTGGCTTTGGGCAG AGACTGGCATCTGTGTCGTGCCCGGCAGTGGCTTTGGACAG < 41bp 1 0.331761877079614 1 0.0881169140338898 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPT2 ENSG00000166123 CDS Human protein_coding chr16:46960906 chr16:46960923 synonymous SNV . 0 38 hm5C_associated_SNPs_23829 0 0 1 0 2 GPT2 chr16:46960837 3'AG 46960837 Downstream 87bp
chr16 46960923 46960923 1 + G A HNSC 46960906 + 46960886 46960926 41 AGACTGGCATCTGTGTCGTGCCCGGCAGTGGCTTTGGGCAG AGACTGGCATCTGTGTCGTGCCCGGCAGTGGCTTTGGACAG < 41bp 1 0.331761877079614 1 0.0881169140338898 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPT2 ENSG00000166123 CDS Human protein_coding chr16:46960906 chr16:46960923 synonymous SNV . 0 38 hm5C_associated_SNPs_23829 0 0 1 0 2 GPT2 chr16:46960949 5'GT 46960949 Upstream 27bp
chr13 61084005 61084005 1 + C G HNSC 61083991 + 61083971 61084011 41 TAATGGCAACAACTTAGAAGCAGCACTGAACGTACTTCTTA TAATGGCAACAACTTAGAAGCAGCACTGAACGTAGTTCTTA < 41bp 1 0.721894327287317 1 0.277125477790833 experiment 0.556211345425366 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61083991 chr13:61084005 nonsynonymous SNV 0.974 4 35 hm5C_associated_SNPs_23830 0 0 1 0 1 TDRD3 chr13:61084053 5'GT 61084053 Upstream 49bp
chr19 50339143 50339143 1 + C T HNSC 50339146 + 50339126 50339166 41 CTCCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAAC CTCCTGGACCCATCCTTTGGCCCCAGAACCCTGGGGCCAAC < 41bp 1 0.497240907447486 1 0.113131880760193 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339146 chr19:50339143 nonsynonymous SNV 0.998 3 18 hm5C_associated_SNPs_23831 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 60bp
chr19 50339143 50339143 1 + C T HNSC 50339147 + 50339127 50339167 41 TCCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACC TCCTGGACCCATCCTTTGGCCCCAGAACCCTGGGGCCAACC < 41bp 1 0.177438025805819 1 0.0579069554805756 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339147 chr19:50339143 nonsynonymous SNV 0.998 3 17 hm5C_associated_SNPs_23832 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 60bp
chr19 50339143 50339143 1 + C T HNSC 50339148 + 50339128 50339168 41 CCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACCC CCTGGACCCATCCTTTGGCCCCAGAACCCTGGGGCCAACCC < 41bp 1 0.443978945397262 1 0.0949753224849701 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339148 chr19:50339143 nonsynonymous SNV 0.998 3 16 hm5C_associated_SNPs_23833 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 60bp
chr19 50339143 50339143 1 + C T HNSC 50339149 + 50339129 50339169 41 CTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACCCT CTGGACCCATCCTTTGGCCCCAGAACCCTGGGGCCAACCCT < 41bp 1 0.443619532128233 1 0.148937791585922 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339149 chr19:50339143 nonsynonymous SNV 0.998 3 15 hm5C_associated_SNPs_23834 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 60bp
chr19 50339143 50339143 1 + C T HNSC 50339162 + 50339142 50339182 41 TCGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCC TTGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCC < 41bp 1 0.0154895177581773 1 0.0361185073852539 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339162 chr19:50339143 nonsynonymous SNV 0.998 3 2 hm5C_associated_SNPs_23835 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 60bp
chr19 50339143 50339143 1 + C T HNSC 50339163 + 50339143 50339183 41 CGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCCT TGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCCT < 41bp 1 0.113951230137179 1 0.0475023984909058 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339163 chr19:50339143 nonsynonymous SNV 0.998 3 1 hm5C_associated_SNPs_23836 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 60bp
chr12 124144433 124144433 1 + G A HNSC 124144415 + 124144395 124144435 41 AGTTCATGTTGACTACAGGGCTGCTTGCTTCTGTCATCGAA AGTTCATGTTGACTACAGGGCTGCTTGCTTCTGTCATCAAA < 41bp 1 0.362730717634237 1 0.0412617325782776 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2H3 ENSG00000111358 CDS Human protein_coding chr12:124144415 chr12:124144433 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_23837 0 0 1 0 2 GTF2H3 chr12:124144342 3'AG 124144342 Downstream 92bp
chr12 124144433 124144433 1 + G A HNSC 124144415 + 124144395 124144435 41 AGTTCATGTTGACTACAGGGCTGCTTGCTTCTGTCATCGAA AGTTCATGTTGACTACAGGGCTGCTTGCTTCTGTCATCAAA < 41bp 1 0.362730717634237 1 0.0412617325782776 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2H3 ENSG00000111358 CDS Human protein_coding chr12:124144415 chr12:124144433 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_23837 0 0 1 0 2 GTF2H3 chr12:124144477 5'GT 124144477 Upstream 45bp
chr17 33321390 33321390 1 + T G HNSC 33321403 + 33321383 33321423 41 AGGTGCATAAGAATGGAGACCACTTCAGCTACTTCAGCCGC AGGTGCAGAAGAATGGAGACCACTTCAGCTACTTCAGCCGC < 41bp 1 0.252250760419552 1 0.0698825418949127 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33321403 chr17:33321390 nonsynonymous SNV 1.000 5 8 hm5C_associated_SNPs_23839 0 0 1 0 1 LIG3 chr17:33321295 3'AG 33321295 Downstream 96bp
chr5 179153693 179153693 1 + A G HNSC 179153689 + 179153669 179153709 41 CTTCTGTCTTAGAAGAGAAACAGAAAAGTGATGCTGAAGAA CTTCTGTCTTAGAAGAGAAACAGAGAAGTGATGCTGAAGAA < 41bp 1 0.532101214143523 1 0.452913403511047 experiment 0.935797571712955 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179153689 chr5:179153693 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_23840 0 0 1 0 2 CANX chr5:179153681 3'AG 179153681 Downstream 13bp
chr5 179153693 179153693 1 + A G HNSC 179153689 + 179153669 179153709 41 CTTCTGTCTTAGAAGAGAAACAGAAAAGTGATGCTGAAGAA CTTCTGTCTTAGAAGAGAAACAGAGAAGTGATGCTGAAGAA < 41bp 1 0.532101214143523 1 0.452913403511047 experiment 0.935797571712955 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179153689 chr5:179153693 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_23840 0 0 1 0 2 CANX chr5:179153760 5'GT 179153760 Upstream 68bp
chr5 179153693 179153693 1 + A G HNSC 179153702 + 179153682 179153722 41 AGAGAAACAGAAAAGTGATGCTGAAGAAGATGGTGGCACTG AGAGAAACAGAGAAGTGATGCTGAAGAAGATGGTGGCACTG < 41bp 1 0.769969609943835 1 0.432688534259796 experiment 0.460060780112329 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179153702 chr5:179153693 nonsynonymous SNV 0.998 0 12 hm5C_associated_SNPs_23841 0 0 1 0 2 CANX chr5:179153681 3'AG 179153681 Downstream 13bp
chr5 179153693 179153693 1 + A G HNSC 179153702 + 179153682 179153722 41 AGAGAAACAGAAAAGTGATGCTGAAGAAGATGGTGGCACTG AGAGAAACAGAGAAGTGATGCTGAAGAAGATGGTGGCACTG < 41bp 1 0.769969609943835 1 0.432688534259796 experiment 0.460060780112329 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179153702 chr5:179153693 nonsynonymous SNV 0.998 0 12 hm5C_associated_SNPs_23841 0 0 1 0 2 CANX chr5:179153760 5'GT 179153760 Upstream 68bp
chr9 133738189 133738189 1 + G T HNSC 133738171 + 133738151 133738191 41 TCTACGTCTCCTCCGAGAGCCGCTTCAACACCCTGGCCGAG TCTACGTCTCCTCCGAGAGCCGCTTCAACACCCTGGCCTAG < 41bp 1 0.116313198931886 1 0.200679332017899 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133738171 chr9:133738189 stopgain 0.861 1 39 hm5C_associated_SNPs_23842 0 0 1 0 1 ABL1 chr9:133738150 3'AG 133738150 Downstream 40bp
chr17 59482066 59482066 1 + C T HNSC 59482065 + 59482045 59482085 41 CTCGTCGTGCGACCCTCCCCCCGCGCGGGAACCACCCACCT CTCGTCGTGCGACCCTCCCCCTGCGCGGGAACCACCCACCT < 41bp 1 0.664799930499548 1 0.714439511299133 experiment 0.670400139000904 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBX2 ENSG00000121068 CDS Human protein_coding chr17:59482065 chr17:59482066 synonymous SNV . 0 22 hm5C_associated_SNPs_23843 0 0 0 0 2 TBX2 chr17:59481967 3'AG 59481967 Downstream 100bp
chr17 59482066 59482066 1 + C T HNSC 59482065 + 59482045 59482085 41 CTCGTCGTGCGACCCTCCCCCCGCGCGGGAACCACCCACCT CTCGTCGTGCGACCCTCCCCCTGCGCGGGAACCACCCACCT < 41bp 1 0.664799930499548 1 0.714439511299133 experiment 0.670400139000904 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBX2 ENSG00000121068 CDS Human protein_coding chr17:59482065 chr17:59482066 synonymous SNV . 0 22 hm5C_associated_SNPs_23843 0 0 0 0 2 TBX2 chr17:59482130 5'GT 59482130 Upstream 65bp
chr11 64978326 64978326 1 + A G HNSC 64978306 + 64978286 64978326 41 ATTTTTCAAAACTCTGGACACAGATCTGGATGGAGTTGTGA ATTTTTCAAAACTCTGGACACAGATCTGGATGGAGTTGTGG < 41bp 1 0.147763642743766 1 0.0594829916954041 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64978306 chr11:64978326 nonsynonymous SNV 0.980 0 41 hm5C_associated_SNPs_23844 0 0 1 0 2 CAPN1 chr11:64978285 3'AG 64978285 Downstream 42bp
chr11 64978326 64978326 1 + A G HNSC 64978306 + 64978286 64978326 41 ATTTTTCAAAACTCTGGACACAGATCTGGATGGAGTTGTGA ATTTTTCAAAACTCTGGACACAGATCTGGATGGAGTTGTGG < 41bp 1 0.147763642743766 1 0.0594829916954041 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64978306 chr11:64978326 nonsynonymous SNV 0.980 0 41 hm5C_associated_SNPs_23844 0 0 1 0 2 CAPN1 chr11:64978343 5'GT 64978343 Upstream 18bp
chr20 44045291 44045291 1 + T A HNSC 44045286 + 44045266 44045306 41 GGGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGT GGGGCCACCCTTCCTGCAGGCCCCAACAGGTGCAGAGCTGT < 41bp 1 0.595662926667093 1 0.113614499568939 experiment 0.808674146665814 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045286 chr20:44045291 nonsynonymous SNV 0.996 1 26 hm5C_associated_SNPs_23845 0 0 1 0 3 PIGT chr20:44045294 5'GT 44045294 Upstream 4bp
chr20 44045291 44045291 1 + T A HNSC 44045286 + 44045266 44045306 41 GGGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGT GGGGCCACCCTTCCTGCAGGCCCCAACAGGTGCAGAGCTGT < 41bp 1 0.595662926667093 1 0.113614499568939 experiment 0.808674146665814 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045286 chr20:44045291 nonsynonymous SNV 0.996 1 26 hm5C_associated_SNPs_23845 0 0 1 0 3 PIGT chr20:44045304 5'GT 44045304 Upstream 14bp
chr20 44045291 44045291 1 + T A HNSC 44045286 + 44045266 44045306 41 GGGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGT GGGGCCACCCTTCCTGCAGGCCCCAACAGGTGCAGAGCTGT < 41bp 1 0.595662926667093 1 0.113614499568939 experiment 0.808674146665814 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045286 chr20:44045291 nonsynonymous SNV 0.996 1 26 hm5C_associated_SNPs_23845 0 0 1 0 3 PIGT chr20:44045334 5'GT 44045334 Upstream 44bp
chr20 44045291 44045291 1 + T A HNSC 44045287 + 44045267 44045307 41 GGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTG GGGCCACCCTTCCTGCAGGCCCCAACAGGTGCAGAGCTGTG < 41bp 1 0.442993534024434 1 0.16219174861908 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045287 chr20:44045291 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_23846 0 0 1 0 3 PIGT chr20:44045294 5'GT 44045294 Upstream 4bp
chr20 44045291 44045291 1 + T A HNSC 44045287 + 44045267 44045307 41 GGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTG GGGCCACCCTTCCTGCAGGCCCCAACAGGTGCAGAGCTGTG < 41bp 1 0.442993534024434 1 0.16219174861908 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045287 chr20:44045291 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_23846 0 0 1 0 3 PIGT chr20:44045304 5'GT 44045304 Upstream 14bp
chr20 44045291 44045291 1 + T A HNSC 44045287 + 44045267 44045307 41 GGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTG GGGCCACCCTTCCTGCAGGCCCCAACAGGTGCAGAGCTGTG < 41bp 1 0.442993534024434 1 0.16219174861908 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045287 chr20:44045291 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_23846 0 0 1 0 3 PIGT chr20:44045334 5'GT 44045334 Upstream 44bp
chr20 44045291 44045291 1 + T A HNSC 44045288 + 44045268 44045308 41 GGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTGG GGCCACCCTTCCTGCAGGCCCCAACAGGTGCAGAGCTGTGG < 41bp 1 0.205913488801158 1 0.342660844326019 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045288 chr20:44045291 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_23847 0 0 1 0 3 PIGT chr20:44045294 5'GT 44045294 Upstream 4bp
chr20 44045291 44045291 1 + T A HNSC 44045288 + 44045268 44045308 41 GGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTGG GGCCACCCTTCCTGCAGGCCCCAACAGGTGCAGAGCTGTGG < 41bp 1 0.205913488801158 1 0.342660844326019 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045288 chr20:44045291 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_23847 0 0 1 0 3 PIGT chr20:44045304 5'GT 44045304 Upstream 14bp
chr20 44045291 44045291 1 + T A HNSC 44045288 + 44045268 44045308 41 GGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTGG GGCCACCCTTCCTGCAGGCCCCAACAGGTGCAGAGCTGTGG < 41bp 1 0.205913488801158 1 0.342660844326019 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045288 chr20:44045291 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_23847 0 0 1 0 3 PIGT chr20:44045334 5'GT 44045334 Upstream 44bp
chr2 173451102 173451102 1 + C A HNSC 173451098 + 173451078 173451118 41 CCAAGACCTCGTGTTGAGACCTCCCGCGCAGTGCCTCTGGT CCAAGACCTCGTGTTGAGACCTCCAGCGCAGTGCCTCTGGT < 41bp 1 0.775457915248676 1 0.948456048965454 experiment 0.449084169502649 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK1 ENSG00000152256 CDS Human protein_coding chr2:173451098 chr2:173451102 nonsynonymous SNV 0.162 1 25 hm5C_associated_SNPs_23848 0 0 1 0 2 PDK1 chr2:173451006 3'AG 173451006 Downstream 97bp
chr2 173451102 173451102 1 + C A HNSC 173451098 + 173451078 173451118 41 CCAAGACCTCGTGTTGAGACCTCCCGCGCAGTGCCTCTGGT CCAAGACCTCGTGTTGAGACCTCCAGCGCAGTGCCTCTGGT < 41bp 1 0.775457915248676 1 0.948456048965454 experiment 0.449084169502649 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK1 ENSG00000152256 CDS Human protein_coding chr2:173451098 chr2:173451102 nonsynonymous SNV 0.162 1 25 hm5C_associated_SNPs_23848 0 0 1 0 2 PDK1 chr2:173451116 5'GT 173451116 Upstream 15bp
chr12 44166765 44166765 1 + G A HNSC 44166754 + 44166734 44166774 41 TTATGAATTGAAGAATGTCACAAATAACTTTGATGAACGAC TTATGAATTGAAGAATGTCACAAATAACTTTAATGAACGAC < 41bp 1 0.216964388563155 1 0.39663690328598 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IRAK4 ENSG00000198001 CDS Human protein_coding chr12:44166754 chr12:44166765 nonsynonymous SNV 0.995 2 32 hm5C_associated_SNPs_23849 0 0 1 0 1 IRAK4 chr12:44166715 3'AG 44166715 Downstream 51bp
chr4 159627834 159627834 1 + C G HNSC 159627823 + 159627803 159627843 41 GCCAGCCAAGGATTGCACACCTATTGAGTATCCAAAACCCG GCCAGCCAAGGATTGCACACCTATTGAGTATGCAAAACCCG < 41bp 1 0.155080491005368 1 0.0906568169593811 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ETFDH ENSG00000171503 CDS Human protein_coding chr4:159627823 chr4:159627834 nonsynonymous SNV 0.996 5 32 hm5C_associated_SNPs_23850 0 0 0 0 1 ETFDH chr4:159627781 3'AG 159627781 Downstream 54bp
chr2 27662654 27662654 1 + C T HNSC 27662638 + 27662618 27662658 41 TGTTTCCTTTTCTAGGAGTTCATTCAAAAGTGCCTGCAGTC TGTTTCCTTTTCTAGGAGTTCATTCAAAAGTGCCTGTAGTC < 41bp 1 0.0466727743894173 1 0.0635263621807098 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27662638 chr2:27662654 stopgain 1.000 1 37 hm5C_associated_SNPs_23851 0 0 1 0 1 NRBP1 chr2:27662633 3'AG 27662633 Downstream 22bp
chr15 96875682 96875682 1 + C A HNSC 96875664 + 96875644 96875684 41 AAGCGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGCGC AAGCGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGAGC < 41bp 1 0.497611518640926 1 0.470450818538666 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NR2F2 ENSG00000185551 CDS Human protein_coding chr15:96875664 chr15:96875682 synonymous SNV . 0 39 hm5C_associated_SNPs_23852 0 0 1 0 1 NR2F2 chr15:96875776 5'GT 96875776 Upstream 95bp
chr16 24826581 24826581 1 + C T HNSC 24826598 + 24826578 24826618 41 CCACGTGCCAAATCGCCTAACGGCTCTAGCAGTGTTAATTG CCATGTGCCAAATCGCCTAACGGCTCTAGCAGTGTTAATTG < 41bp 1 0.42216024419345 1 0.141025215387344 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24826598 chr16:24826581 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_23853 0 0 1 0 1 TNRC6A chr16:24826626 5'GT 24826626 Upstream 46bp
chr9 129974476 129974476 1 + G A HNSC 129974474 + 129974454 129974494 41 TGCCCACCATGGAGGGGCCTCTGAGAAGAAAAACCCTGCTC TGCCCACCATGGAGGGGCCTCTAAGAAGAAAAACCCTGCTC < 41bp 1 0.447991607842316 1 0.424405694007874 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RALGPS1 ENSG00000136828 CDS Human protein_coding chr9:129974474 chr9:129974476 synonymous SNV . 0 23 hm5C_associated_SNPs_23854 0 0 1 0 2 RALGPS1 chr9:129974410 3'AG 129974410 Downstream 67bp
chr9 129974476 129974476 1 + G A HNSC 129974474 + 129974454 129974494 41 TGCCCACCATGGAGGGGCCTCTGAGAAGAAAAACCCTGCTC TGCCCACCATGGAGGGGCCTCTAAGAAGAAAAACCCTGCTC < 41bp 1 0.447991607842316 1 0.424405694007874 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RALGPS1 ENSG00000136828 CDS Human protein_coding chr9:129974474 chr9:129974476 synonymous SNV . 0 23 hm5C_associated_SNPs_23854 0 0 1 0 2 RALGPS1 chr9:129974515 5'GT 129974515 Upstream 40bp
chr19 14512333 14512333 1 + C T HNSC 14512320 + 14512300 14512340 41 CTTGAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA CTTGAAGATATCATGAGGATCCTGGCCAAGAGCTTGCCTAA < 41bp 1 0.258145975923654 1 0.0665218532085419 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14512320 chr19:14512333 synonymous SNV . 0 34 hm5C_associated_SNPs_23855 0 0 1 0 1 ADGRE5 chr19:14512375 5'GT 14512375 Upstream 43bp
chr7 129046276 129046276 1 + G A HNSC 129046285 + 129046265 129046305 41 TGTATGTAACTGAAATTGACCCCATCTGTGCCCTGCAAGCC TGTATGTAACTAAAATTGACCCCATCTGTGCCCTGCAAGCC < 41bp 1 0.0895083586649911 1 0.0345128178596497 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129046285 chr7:129046276 nonsynonymous SNV 0.998 5 12 hm5C_associated_SNPs_23856 0 0 1 0 2 AHCYL2 chr7:129046219 3'AG 129046219 Downstream 58bp
chr7 129046276 129046276 1 + G A HNSC 129046285 + 129046265 129046305 41 TGTATGTAACTGAAATTGACCCCATCTGTGCCCTGCAAGCC TGTATGTAACTAAAATTGACCCCATCTGTGCCCTGCAAGCC < 41bp 1 0.0895083586649911 1 0.0345128178596497 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129046285 chr7:129046276 nonsynonymous SNV 0.998 5 12 hm5C_associated_SNPs_23856 0 0 1 0 2 AHCYL2 chr7:129046307 5'GT 129046307 Upstream 32bp
chr5 149754329 149754329 1 + G A HNSC 149754323 + 149754303 149754343 41 GCGGGGAAGCGGGAGGAGGACTCGCAGAGCAGCAGCGAGGA GCGGGGAAGCGGGAGGAGGACTCGCAAAGCAGCAGCGAGGA < 41bp 1 0.583299627975167 1 0.270928919315338 experiment 0.833400744049666 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754323 chr5:149754329 synonymous SNV . 0 27 hm5C_associated_SNPs_23857 0 0 1 0 1 TCOF1 chr5:149754374 5'GT 149754374 Upstream 46bp
chr5 149754329 149754329 1 + G A HNSC 149754325 + 149754305 149754345 41 GGGGAAGCGGGAGGAGGACTCGCAGAGCAGCAGCGAGGAAT GGGGAAGCGGGAGGAGGACTCGCAAAGCAGCAGCGAGGAAT < 41bp 1 0.79500206317588 1 0.488126009702682 experiment 0.40999587364824 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754325 chr5:149754329 synonymous SNV . 0 25 hm5C_associated_SNPs_23858 0 0 1 0 1 TCOF1 chr5:149754374 5'GT 149754374 Upstream 46bp
chr5 149754329 149754329 1 + G A HNSC 149754335 + 149754315 149754355 41 GAGGAGGACTCGCAGAGCAGCAGCGAGGAATCGGACAGTGA GAGGAGGACTCGCAAAGCAGCAGCGAGGAATCGGACAGTGA < 41bp 1 0.53817263603784 1 0.325180172920227 experiment 0.923654727924321 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754335 chr5:149754329 synonymous SNV . 0 15 hm5C_associated_SNPs_23859 0 0 1 0 1 TCOF1 chr5:149754374 5'GT 149754374 Upstream 46bp
chr11 118267058 118267058 1 + C T HNSC 118267077 + 118267057 118267097 41 CCCCTCACCATGGACCAGATCCGGCCAAACACAGAACTAAA CTCCTCACCATGGACCAGATCCGGCCAAACACAGAACTAAA < 41bp 1 0.216523790865439 1 0.284682959318161 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UBE4A ENSG00000110344 CDS Human protein_coding chr11:118267077 chr11:118267058 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_23861 0 0 1 0 1 UBE4A chr11:118267029 3'AG 118267029 Downstream 30bp
chr2 189458684 189458684 1 + A T HNSC 189458701 + 189458681 189458721 41 GGGACTAACTCTTGAAGGCACAGTATTTTGTCTCGACCCGT GGGTCTAACTCTTGAAGGCACAGTATTTTGTCTCGACCCGT < 41bp 1 0.596566234559943 1 0.0931767225265503 experiment 0.806867530880114 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GULP1 ENSG00000144366 CDS Human protein_coding chr2:189458701 chr2:189458684 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_23862 0 0 1 2 1 GULP1 chr2:189458667 3'AG 189458667 Downstream 18bp
chr11 118267059 118267059 1 + C T HNSC 118267077 + 118267057 118267097 41 CCCCTCACCATGGACCAGATCCGGCCAAACACAGAACTAAA CCTCTCACCATGGACCAGATCCGGCCAAACACAGAACTAAA < 41bp 1 0.242147759748033 1 0.248868972063065 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UBE4A ENSG00000110344 CDS Human protein_coding chr11:118267077 chr11:118267059 synonymous SNV . 0 3 hm5C_associated_SNPs_23863 0 0 1 0 1 UBE4A chr11:118267029 3'AG 118267029 Downstream 31bp
chr13 76382245 76382245 1 + C G HNSC 76382234 + 76382214 76382254 41 GGAACTACCGTGCCTCCCATCAGTTTCACCCCTGGCCCCTG GGAACTACCGTGCCTCCCATCAGTTTCACCCGTGGCCCCTG < 41bp 1 0.271524194405342 1 0.823404610157013 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76382234 chr13:76382245 nonsynonymous SNV 0.919 4 32 hm5C_associated_SNPs_23880 0 0 1 0 1 LMO7 chr13:76382335 5'GT 76382335 Upstream 91bp
chr10 43316394 43316394 1 + C T HNSC 43316391 + 43316371 43316411 41 TTTCCTTTAAGGCCCTATCACTCCACAGGGAACTGGTTTCT TTTCCTTTAAGGCCCTATCACTCTACAGGGAACTGGTTTCT < 41bp 1 0.465628686426088 1 0.846824169158936 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BMS1 ENSG00000165733 CDS Human protein_coding chr10:43316391 chr10:43316394 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_23881 0 0 1 0 2 BMS1 chr10:43316382 3'AG 43316382 Downstream 13bp
chr10 43316394 43316394 1 + C T HNSC 43316391 + 43316371 43316411 41 TTTCCTTTAAGGCCCTATCACTCCACAGGGAACTGGTTTCT TTTCCTTTAAGGCCCTATCACTCTACAGGGAACTGGTTTCT < 41bp 1 0.465628686426088 1 0.846824169158936 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BMS1 ENSG00000165733 CDS Human protein_coding chr10:43316391 chr10:43316394 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_23881 0 0 1 0 2 BMS1 chr10:43316440 5'GT 43316440 Upstream 47bp
chr3 49742512 49742512 1 + C T HNSC 49742520 + 49742500 49742540 41 CAACCGCTTCCTCAGCACAGCGGCTGTGAGCCTCATGACCC CAACCGCTTCCTTAGCACAGCGGCTGTGAGCCTCATGACCC < 41bp 1 0.443539150150453 1 0.198510527610779 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49742520 chr3:49742512 synonymous SNV . 0 13 hm5C_associated_SNPs_23882 0 0 1 0 1 RNF123 chr3:49742417 3'AG 49742417 Downstream 96bp
chr14 105355876 105355876 1 + C T HNSC 105355874 + 105355854 105355894 41 ACGAGGCGCCGGCAGCAGGGCTCGGATTACACGTCCACCTC ACGAGGCGCCGGCAGCAGGGCTTGGATTACACGTCCACCTC < 41bp 1 0.266806332673823 1 0.111169129610062 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEP170B ENSG00000099814 CDS Human protein_coding chr14:105355874 chr14:105355876 nonsynonymous SNV 0.991 3 23 hm5C_associated_SNPs_23884 0 0 1 0 1 CEP170B chr14:105355852 3'AG 105355852 Downstream 25bp
chr20 32217677 32217677 1 + C T HNSC 32217687 + 32217667 32217707 41 CCGAGTTGGTCTCCAGGCAGCACAGCCCTGGGAGTGCAGAT CCGAGTTGGTTTCCAGGCAGCACAGCCCTGGGAGTGCAGAT < 41bp 1 0.295469190443659 1 0.0861987173557281 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CBFA2T2 ENSG00000078699 CDS Human protein_coding chr20:32217687 chr20:32217677 synonymous SNV . 0 11 hm5C_associated_SNPs_23885 0 0 1 0 1 CBFA2T2 chr20:32217720 5'GT 32217720 Upstream 44bp
chr20 32217677 32217677 1 + C T HNSC 32217689 + 32217669 32217709 41 GAGTTGGTCTCCAGGCAGCACAGCCCTGGGAGTGCAGATTC GAGTTGGTTTCCAGGCAGCACAGCCCTGGGAGTGCAGATTC < 41bp 1 0.401923116347318 1 0.0373454093933105 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CBFA2T2 ENSG00000078699 CDS Human protein_coding chr20:32217689 chr20:32217677 synonymous SNV . 0 9 hm5C_associated_SNPs_23886 0 0 1 0 1 CBFA2T2 chr20:32217720 5'GT 32217720 Upstream 44bp
chr9 131897100 131897100 1 + C T HNSC 131897102 + 131897082 131897122 41 GCAGCCTTCGCTGCTTTCCTCTGCTGTCTCTGCAAGATTGG GCAGCCTTCGCTGCTTTCTTCTGCTGTCTCTGCAAGATTGG < 41bp 1 0.486581427926211 1 0.359908640384674 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPA ENSG00000119383 CDS Human protein_coding chr9:131897102 chr9:131897100 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_23887 0 0 1 0 2 PTPA chr9:131897074 3'AG 131897074 Downstream 27bp
chr9 131897100 131897100 1 + C T HNSC 131897102 + 131897082 131897122 41 GCAGCCTTCGCTGCTTTCCTCTGCTGTCTCTGCAAGATTGG GCAGCCTTCGCTGCTTTCTTCTGCTGTCTCTGCAAGATTGG < 41bp 1 0.486581427926211 1 0.359908640384674 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPA ENSG00000119383 CDS Human protein_coding chr9:131897102 chr9:131897100 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_23887 0 0 1 0 2 PTPA chr9:131897173 5'GT 131897173 Upstream 74bp
chr4 103500169 103500169 1 + G A HNSC 103500160 + 103500140 103500180 41 CTGGCAGCTTCACAAGGCGCCTGGAACCCGTGGTATCAGAC CTGGCAGCTTCACAAGGCGCCTGGAACCCATGGTATCAGAC < 41bp 1 0.623743836411979 1 0.302279770374298 experiment 0.752512327176043 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103500160 chr4:103500169 nonsynonymous SNV 0.805 4 30 hm5C_associated_SNPs_23888 0 0 1 0 1 NFKB1 chr4:103500196 5'GT 103500196 Upstream 28bp
chr12 50822793 50822793 1 + A G HNSC 50822799 + 50822779 50822819 41 TGAAACCACAAGAAATACTACAGGCATTGAAGAATCAACTG TGAAACCACAAGAAGTACTACAGGCATTGAAGAATCAACTG < 41bp 1 0.483536181517206 1 0.308820068836212 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LARP4 ENSG00000161813 CDS Human protein_coding chr12:50822799 chr12:50822793 nonsynonymous SNV 0.928 0 15 hm5C_associated_SNPs_23890 0 0 1 0 2 LARP4 chr12:50822718 3'AG 50822718 Downstream 76bp
chr12 50822793 50822793 1 + A G HNSC 50822799 + 50822779 50822819 41 TGAAACCACAAGAAATACTACAGGCATTGAAGAATCAACTG TGAAACCACAAGAAGTACTACAGGCATTGAAGAATCAACTG < 41bp 1 0.483536181517206 1 0.308820068836212 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LARP4 ENSG00000161813 CDS Human protein_coding chr12:50822799 chr12:50822793 nonsynonymous SNV 0.928 0 15 hm5C_associated_SNPs_23890 0 0 1 0 2 LARP4 chr12:50822873 5'GT 50822873 Upstream 81bp
chr22 29684679 29684679 1 + G C HNSC 29684675 + 29684655 29684695 41 TTTCCGGACCAGGAGAGAACCGGAGCATGAGTGGCCCTGAT TTTCCGGACCAGGAGAGAACCGGACCATGAGTGGCCCTGAT < 41bp 1 0.636710209563778 1 0.912412166595459 experiment 0.726579580872444 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29684675 chr22:29684679 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_23891 0 0 1 0 2 EWSR1 chr22:29684595 3'AG 29684595 Downstream 85bp
chr22 29684679 29684679 1 + G C HNSC 29684675 + 29684655 29684695 41 TTTCCGGACCAGGAGAGAACCGGAGCATGAGTGGCCCTGAT TTTCCGGACCAGGAGAGAACCGGACCATGAGTGGCCCTGAT < 41bp 1 0.636710209563778 1 0.912412166595459 experiment 0.726579580872444 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29684675 chr22:29684679 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_23891 0 0 1 0 2 EWSR1 chr22:29684775 5'GT 29684775 Upstream 97bp
chr19 541375 541375 1 + T C HNSC 541393 + 541373 541413 41 CGTGACGGCGTGAAGGTGCCCACCACGCTGGCCGAGTACTG CGCGACGGCGTGAAGGTGCCCACCACGCTGGCCGAGTACTG < 41bp 1 0.719086338545279 1 0.0710590481758118 experiment 0.561827322909441 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC34 ENSG00000099804 CDS Human protein_coding chr19:541393 chr19:541375 nonsynonymous SNV 0.078 0 3 hm5C_associated_SNPs_23893 0 0 1 0 1 CDC34 chr19:541339 3'AG 541339 Downstream 37bp
chr7 73969543 73969543 1 + G T HNSC 73969540 + 73969520 73969560 41 GAGGGAGTCAAAGAGCCCATCATGGATAGTCAAGGTACCCA GAGGGAGTCAAAGAGCCCATCATTGATAGTCAAGGTACCCA < 41bp 1 0.118342444264372 1 0.0689175128936768 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73969540 chr7:73969543 nonsynonymous SNV 0.013 0 24 hm5C_associated_SNPs_23894 0 0 1 0 2 GTF2IRD1 chr7:73969504 3'AG 73969504 Downstream 40bp
chr7 73969543 73969543 1 + G T HNSC 73969540 + 73969520 73969560 41 GAGGGAGTCAAAGAGCCCATCATGGATAGTCAAGGTACCCA GAGGGAGTCAAAGAGCCCATCATTGATAGTCAAGGTACCCA < 41bp 1 0.118342444264372 1 0.0689175128936768 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73969540 chr7:73969543 nonsynonymous SNV 0.013 0 24 hm5C_associated_SNPs_23894 0 0 1 0 2 GTF2IRD1 chr7:73969553 5'GT 73969553 Upstream 11bp
chr5 131953939 131953939 1 + A T HNSC 131953938 + 131953918 131953958 41 GATGATTGTTATGAGGACAACAGAACTTGTGAACAAGGATC GATGATTGTTATGAGGACAACTGAACTTGTGAACAAGGATC < 41bp 1 0.495094395703063 1 0.382280707359314 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131953938 chr5:131953939 synonymous SNV . 0 22 hm5C_associated_SNPs_23895 0 0 1 0 1 RAD50 chr5:131953986 5'GT 131953986 Upstream 48bp
chr2 99179952 99179952 1 + C T HNSC 99179968 + 99179948 99179988 41 TACCCGCTGCTGACCACTCTCACCGACTGCGTGGCCATGAT TACCTGCTGCTGACCACTCTCACCGACTGCGTGGCCATGAT < 41bp 1 0.661275919576841 1 0.318508148193359 experiment 0.677448160846318 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99179968 chr2:99179952 nonsynonymous SNV 0.950 4 5 hm5C_associated_SNPs_23896 0 0 1 0 1 INPP4A chr2:99179928 3'AG 99179928 Downstream 25bp
chr2 97008569 97008569 1 + G C HNSC 97008573 + 97008553 97008593 41 TAAACAGAAAGACACCGAACCAACCAACTTTAAAGTAAGAA TAAACAGAAAGACACCCAACCAACCAACTTTAAAGTAAGAA < 41bp 1 0.0597752906179768 1 0.237188935279846 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCAPH ENSG00000121152 CDS Human protein_coding chr2:97008573 chr2:97008569 nonsynonymous SNV 0.671 4 17 hm5C_associated_SNPs_23897 0 0 1 0 2 NCAPH chr2:97008494 3'AG 97008494 Downstream 76bp
chr2 97008569 97008569 1 + G C HNSC 97008573 + 97008553 97008593 41 TAAACAGAAAGACACCGAACCAACCAACTTTAAAGTAAGAA TAAACAGAAAGACACCCAACCAACCAACTTTAAAGTAAGAA < 41bp 1 0.0597752906179768 1 0.237188935279846 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCAPH ENSG00000121152 CDS Human protein_coding chr2:97008573 chr2:97008569 nonsynonymous SNV 0.671 4 17 hm5C_associated_SNPs_23897 0 0 1 0 2 NCAPH chr2:97008586 5'GT 97008586 Upstream 18bp
chr4 20568976 20568976 1 + C T HNSC 20568982 + 20568962 20569002 41 AGTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGG AGTGATCCAGTTGATTTTTACCGATGCACCTGTCCATATGG < 41bp 1 0.111701796976624 1 0.47745344042778 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568982 chr4:20568976 synonymous SNV . 0 15 hm5C_associated_SNPs_23898 0 0 1 0 2 SLIT2 chr4:20568885 3'AG 20568885 Downstream 92bp
chr4 20568976 20568976 1 + C T HNSC 20568982 + 20568962 20569002 41 AGTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGG AGTGATCCAGTTGATTTTTACCGATGCACCTGTCCATATGG < 41bp 1 0.111701796976624 1 0.47745344042778 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568982 chr4:20568976 synonymous SNV . 0 15 hm5C_associated_SNPs_23898 0 0 1 0 2 SLIT2 chr4:20569009 5'GT 20569009 Upstream 34bp
chr4 20568976 20568976 1 + C T HNSC 20568983 + 20568963 20569003 41 GTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGGT GTGATCCAGTTGATTTTTACCGATGCACCTGTCCATATGGT < 41bp 1 0.145167993666608 1 0.590771079063416 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568983 chr4:20568976 synonymous SNV . 0 14 hm5C_associated_SNPs_23899 0 0 1 0 2 SLIT2 chr4:20568885 3'AG 20568885 Downstream 92bp
chr4 20568976 20568976 1 + C T HNSC 20568983 + 20568963 20569003 41 GTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGGT GTGATCCAGTTGATTTTTACCGATGCACCTGTCCATATGGT < 41bp 1 0.145167993666608 1 0.590771079063416 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568983 chr4:20568976 synonymous SNV . 0 14 hm5C_associated_SNPs_23899 0 0 1 0 2 SLIT2 chr4:20569009 5'GT 20569009 Upstream 34bp
chr4 1017629 1017629 1 + C T HNSC 1017627 + 1017607 1017647 41 CGACCGCGCTTCACACAGCCCTCCAAGATGAGGCGCCGGGT CGACCGCGCTTCACACAGCCCTTCAAGATGAGGCGCCGGGT < 41bp 1 0.42905159040726 1 0.548427700996399 experiment 1 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control FGFRL1 ENSG00000127418 CDS Human protein_coding chr4:1017627 chr4:1017629 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_23901 0 0 1 0 1 FGFRL1 chr4:1017605 3'AG 1017605 Downstream 25bp
chr4 87691069 87691069 1 + G C HNSC 87691057 + 87691037 87691077 41 GCTCTTTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTG GCTCTTTCCTGGACAGCCAGCAGCAGAAAGTGCAAAAATTG < 41bp 1 0.370308388492594 1 0.639880657196045 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPN13 ENSG00000163629 CDS Human protein_coding chr4:87691057 chr4:87691069 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_23902 0 0 0 0 1 PTPN13 chr4:87691136 5'GT 87691136 Upstream 68bp
chr4 87691069 87691069 1 + G C HNSC 87691060 + 87691040 87691080 41 CTTTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTGATG CTTTCCTGGACAGCCAGCAGCAGAAAGTGCAAAAATTGATG < 41bp 1 0.275165653333273 1 0.471859335899353 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN13 ENSG00000163629 CDS Human protein_coding chr4:87691060 chr4:87691069 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_23903 0 0 0 0 1 PTPN13 chr4:87691136 5'GT 87691136 Upstream 68bp
chr3 120315376 120315376 1 + G A HNSC 120315381 + 120315361 120315401 41 ACGATCCCAACCGCCGAGGGCTCATCGTGAGTGTGGGGCCT ACGATCCCAACCGCCAAGGGCTCATCGTGAGTGTGGGGCCT < 41bp 1 0.465998803774395 1 0.064334511756897 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFB4 ENSG00000065518 CDS Human protein_coding chr3:120315381 chr3:120315376 nonsynonymous SNV 0.025 0 16 hm5C_associated_SNPs_23905 0 0 1 0 1 NDUFB4 chr3:120315386 5'GT 120315386 Upstream 11bp
chr12 112940025 112940025 1 + T C HNSC 112940029 + 112940009 112940049 41 GTGGAGATCAGAGCCCTCTCCCGCCTTGTACTCCAACGCCA GTGGAGATCAGAGCCCCCTCCCGCCTTGTACTCCAACGCCA < 41bp 1 0.293297739043281 1 0.224377363920212 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112940029 chr12:112940025 synonymous SNV . 0 17 hm5C_associated_SNPs_23906 0 0 1 0 1 PTPN11 chr12:112939948 3'AG 112939948 Downstream 78bp
chr12 112940027 112940027 1 + T C HNSC 112940029 + 112940009 112940049 41 GTGGAGATCAGAGCCCTCTCCCGCCTTGTACTCCAACGCCA GTGGAGATCAGAGCCCTCCCCCGCCTTGTACTCCAACGCCA < 41bp 1 0.348380278705815 1 0.222508370876312 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112940029 chr12:112940027 nonsynonymous SNV 0.997 2 19 hm5C_associated_SNPs_23907 0 0 1 0 1 PTPN11 chr12:112939948 3'AG 112939948 Downstream 80bp
chr9 131247076 131247076 1 + A T HNSC 131247090 + 131247070 131247110 41 AAAGAGAGCTTGAAGAAGGCCATCCGAGCCCAGAAGGAGCG AAAGAGTGCTTGAAGAAGGCCATCCGAGCCCAGAAGGAGCG < 41bp 1 0.126623052455193 1 0.142958670854568 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ODF2 ENSG00000136811 CDS Human protein_coding chr9:131247090 chr9:131247076 nonsynonymous SNV 0.557 1 7 hm5C_associated_SNPs_23908 0 0 1 0 2 ODF2 chr9:131246980 3'AG 131246980 Downstream 97bp
chr9 131247076 131247076 1 + A T HNSC 131247090 + 131247070 131247110 41 AAAGAGAGCTTGAAGAAGGCCATCCGAGCCCAGAAGGAGCG AAAGAGTGCTTGAAGAAGGCCATCCGAGCCCAGAAGGAGCG < 41bp 1 0.126623052455193 1 0.142958670854568 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ODF2 ENSG00000136811 CDS Human protein_coding chr9:131247090 chr9:131247076 nonsynonymous SNV 0.557 1 7 hm5C_associated_SNPs_23908 0 0 1 0 2 ODF2 chr9:131247165 5'GT 131247165 Upstream 90bp
chr9 131247076 131247076 1 + A T HNSC 131247094 + 131247074 131247114 41 AGAGCTTGAAGAAGGCCATCCGAGCCCAGAAGGAGCGAGCC AGTGCTTGAAGAAGGCCATCCGAGCCCAGAAGGAGCGAGCC < 41bp 1 0.431215886548302 1 0.743545830249786 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ODF2 ENSG00000136811 CDS Human protein_coding chr9:131247094 chr9:131247076 nonsynonymous SNV 0.557 1 3 hm5C_associated_SNPs_23909 0 0 1 0 2 ODF2 chr9:131246980 3'AG 131246980 Downstream 97bp
chr9 131247076 131247076 1 + A T HNSC 131247094 + 131247074 131247114 41 AGAGCTTGAAGAAGGCCATCCGAGCCCAGAAGGAGCGAGCC AGTGCTTGAAGAAGGCCATCCGAGCCCAGAAGGAGCGAGCC < 41bp 1 0.431215886548302 1 0.743545830249786 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ODF2 ENSG00000136811 CDS Human protein_coding chr9:131247094 chr9:131247076 nonsynonymous SNV 0.557 1 3 hm5C_associated_SNPs_23909 0 0 1 0 2 ODF2 chr9:131247165 5'GT 131247165 Upstream 90bp
chr16 85689393 85689393 1 + G A HNSC 85689403 + 85689383 85689423 41 CCCCACCCCCGGCTCCCTGCCCCCACTGCACCCATCAGCGA CCCCACCCCCAGCTCCCTGCCCCCACTGCACCCATCAGCGA < 41bp 1 0.488976230768856 1 0.124807596206665 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85689403 chr16:85689393 nonsynonymous SNV 0.465 1 11 hm5C_associated_SNPs_23910 0 0 1 0 1 GSE1 chr16:85689332 3'AG 85689332 Downstream 62bp
chr17 41154796 41154796 1 + G C HNSC 41154779 + 41154759 41154799 41 ACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAAGAGA ACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAACAGA < 41bp 1 0.518860876987435 1 0.37147980928421 experiment 0.96227824602513 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL27 ENSG00000131469 CDS Human protein_coding chr17:41154779 chr17:41154796 nonsynonymous SNV 0.986 2 38 hm5C_associated_SNPs_23911 0 0 1 0 1 RPL27 chr17:41154800 5'GT 41154800 Upstream 5bp
chr1 78001608 78001608 1 + G A HNSC 78001588 + 78001568 78001608 41 TCGGCAGACACCATGACCAACCGCCTTCTCCAAAGGAGCCG TCGGCAGACACCATGACCAACCGCCTTCTCCAAAGGAGCCA < 41bp 1 0.149549389623042 1 0.0533345341682434 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001588 chr1:78001608 nonsynonymous SNV 0.522 0 41 hm5C_associated_SNPs_23912 0 0 0 0 1 AK5 chr1:78001532 3'AG 78001532 Downstream 77bp
chr1 78001608 78001608 1 + G A HNSC 78001612 + 78001592 78001632 41 CTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGTGGACGACAC CTTCTCCAAAGGAGCCAGAGCAGCCTGCCTGTGGACGACAC < 41bp 1 0.44334197526132 1 0.383168041706085 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001612 chr1:78001608 nonsynonymous SNV 0.522 0 17 hm5C_associated_SNPs_23913 0 0 0 0 1 AK5 chr1:78001532 3'AG 78001532 Downstream 77bp
chr1 109806290 109806290 1 + C G HNSC 109806280 + 109806260 109806300 41 GCAGCAGCCTGGTGGCCTGGCATGGCCTCTCGCTGCCCATC GCAGCAGCCTGGTGGCCTGGCATGGCCTCTGGCTGCCCATC < 41bp 1 0.264761841629817 1 0.24673068523407 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806280 chr1:109806290 nonsynonymous SNV 0.947 0 31 hm5C_associated_SNPs_23914 0 0 1 0 1 CELSR2 chr1:109806233 3'AG 109806233 Downstream 58bp
chr3 17056235 17056235 1 + C T HNSC 17056251 + 17056231 17056271 41 GCCTCTCCTCTGTGGCCAATCTCATGCAGTGCATGTTGGCG GCCTTTCCTCTGTGGCCAATCTCATGCAGTGCATGTTGGCG < 41bp 1 0.531010870562207 1 0.143379151821136 experiment 0.937978258875586 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCL2 ENSG00000154822 CDS Human protein_coding chr3:17056251 chr3:17056235 synonymous SNV . 0 5 hm5C_associated_SNPs_23915 0 0 1 0 1 PLCL2 chr3:17056200 3'AG 17056200 Downstream 36bp
chr1 22329569 22329569 1 + C T HNSC 22329556 + 22329536 22329576 41 CGTTGTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCT CGTTGTCCATGGTGAGGATGCGGTCCCCTACAGTTGGCCCT < 41bp 1 0.197618189884138 1 0.212063163518906 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329556 chr1:22329569 synonymous SNV . 0 34 hm5C_associated_SNPs_23917 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 74bp
chr1 22329569 22329569 1 + C T HNSC 22329556 + 22329536 22329576 41 CGTTGTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCT CGTTGTCCATGGTGAGGATGCGGTCCCCTACAGTTGGCCCT < 41bp 1 0.197618189884138 1 0.212063163518906 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329556 chr1:22329569 synonymous SNV . 0 34 hm5C_associated_SNPs_23917 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 13bp
chr1 22329569 22329569 1 + C T HNSC 22329560 + 22329540 22329580 41 GTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCA GTCCATGGTGAGGATGCGGTCCCCTACAGTTGGCCCTGGCA < 41bp 1 0.194187694155942 1 0.0722876191139221 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329560 chr1:22329569 synonymous SNV . 0 30 hm5C_associated_SNPs_23918 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 74bp
chr1 22329569 22329569 1 + C T HNSC 22329560 + 22329540 22329580 41 GTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCA GTCCATGGTGAGGATGCGGTCCCCTACAGTTGGCCCTGGCA < 41bp 1 0.194187694155942 1 0.0722876191139221 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329560 chr1:22329569 synonymous SNV . 0 30 hm5C_associated_SNPs_23918 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 13bp
chr1 22329569 22329569 1 + C T HNSC 22329561 + 22329541 22329581 41 TCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAG TCCATGGTGAGGATGCGGTCCCCTACAGTTGGCCCTGGCAG < 41bp 1 0.228634454959457 1 0.16746997833252 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329561 chr1:22329569 synonymous SNV . 0 29 hm5C_associated_SNPs_23919 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 74bp
chr1 22329569 22329569 1 + C T HNSC 22329561 + 22329541 22329581 41 TCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAG TCCATGGTGAGGATGCGGTCCCCTACAGTTGGCCCTGGCAG < 41bp 1 0.228634454959457 1 0.16746997833252 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329561 chr1:22329569 synonymous SNV . 0 29 hm5C_associated_SNPs_23919 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 13bp
chr1 22329569 22329569 1 + C T HNSC 22329562 + 22329542 22329582 41 CCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGG CCATGGTGAGGATGCGGTCCCCTACAGTTGGCCCTGGCAGG < 41bp 1 0.0529055000993454 1 0.204518496990204 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329562 chr1:22329569 synonymous SNV . 0 28 hm5C_associated_SNPs_23920 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 74bp
chr1 22329569 22329569 1 + C T HNSC 22329562 + 22329542 22329582 41 CCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGG CCATGGTGAGGATGCGGTCCCCTACAGTTGGCCCTGGCAGG < 41bp 1 0.0529055000993454 1 0.204518496990204 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329562 chr1:22329569 synonymous SNV . 0 28 hm5C_associated_SNPs_23920 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 13bp
chr1 22329569 22329569 1 + C T HNSC 22329563 + 22329543 22329583 41 CATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGT CATGGTGAGGATGCGGTCCCCTACAGTTGGCCCTGGCAGGT < 41bp 1 0.799194707137222 1 0.346305727958679 experiment 0.401610585725557 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329563 chr1:22329569 synonymous SNV . 0 27 hm5C_associated_SNPs_23921 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 74bp
chr1 22329569 22329569 1 + C T HNSC 22329563 + 22329543 22329583 41 CATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGT CATGGTGAGGATGCGGTCCCCTACAGTTGGCCCTGGCAGGT < 41bp 1 0.799194707137222 1 0.346305727958679 experiment 0.401610585725557 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329563 chr1:22329569 synonymous SNV . 0 27 hm5C_associated_SNPs_23921 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 13bp
chr1 22329569 22329569 1 + C T HNSC 22329566 + 22329546 22329586 41 GGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAG GGTGAGGATGCGGTCCCCTACAGTTGGCCCTGGCAGGTAAG < 41bp 1 0.364072370414285 1 0.0891200304031372 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329566 chr1:22329569 synonymous SNV . 0 24 hm5C_associated_SNPs_23922 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 74bp
chr1 22329569 22329569 1 + C T HNSC 22329566 + 22329546 22329586 41 GGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAG GGTGAGGATGCGGTCCCCTACAGTTGGCCCTGGCAGGTAAG < 41bp 1 0.364072370414285 1 0.0891200304031372 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329566 chr1:22329569 synonymous SNV . 0 24 hm5C_associated_SNPs_23922 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 13bp
chr1 22329569 22329569 1 + C T HNSC 22329573 + 22329553 22329593 41 ATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATA ATGCGGTCCCCTACAGTTGGCCCTGGCAGGTAAGAGCAATA < 41bp 1 0.102084478927461 1 0.0402600765228271 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329573 chr1:22329569 synonymous SNV . 0 17 hm5C_associated_SNPs_23923 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 74bp
chr1 22329569 22329569 1 + C T HNSC 22329573 + 22329553 22329593 41 ATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATA ATGCGGTCCCCTACAGTTGGCCCTGGCAGGTAAGAGCAATA < 41bp 1 0.102084478927461 1 0.0402600765228271 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329573 chr1:22329569 synonymous SNV . 0 17 hm5C_associated_SNPs_23923 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 13bp
chr1 22329569 22329569 1 + C T HNSC 22329574 + 22329554 22329594 41 TGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAG TGCGGTCCCCTACAGTTGGCCCTGGCAGGTAAGAGCAATAG < 41bp 1 0.0912500920521208 1 0.0463947951793671 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329574 chr1:22329569 synonymous SNV . 0 16 hm5C_associated_SNPs_23924 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 74bp
chr1 22329569 22329569 1 + C T HNSC 22329574 + 22329554 22329594 41 TGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAG TGCGGTCCCCTACAGTTGGCCCTGGCAGGTAAGAGCAATAG < 41bp 1 0.0912500920521208 1 0.0463947951793671 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329574 chr1:22329569 synonymous SNV . 0 16 hm5C_associated_SNPs_23924 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 13bp
chr1 22329569 22329569 1 + C T HNSC 22329575 + 22329555 22329595 41 GCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAGC GCGGTCCCCTACAGTTGGCCCTGGCAGGTAAGAGCAATAGC < 41bp 1 0.274210110435918 1 0.0780594646930695 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329575 chr1:22329569 synonymous SNV . 0 15 hm5C_associated_SNPs_23925 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 74bp
chr1 22329569 22329569 1 + C T HNSC 22329575 + 22329555 22329595 41 GCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAGC GCGGTCCCCTACAGTTGGCCCTGGCAGGTAAGAGCAATAGC < 41bp 1 0.274210110435918 1 0.0780594646930695 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329575 chr1:22329569 synonymous SNV . 0 15 hm5C_associated_SNPs_23925 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 13bp
chr1 22329569 22329569 1 + C T HNSC 22329579 + 22329559 22329599 41 TCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAGCAGCT TCCCCTACAGTTGGCCCTGGCAGGTAAGAGCAATAGCAGCT < 41bp 1 0.630487229268947 1 0.554352521896362 experiment 0.739025541462106 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329579 chr1:22329569 synonymous SNV . 0 11 hm5C_associated_SNPs_23926 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 74bp
chr1 22329569 22329569 1 + C T HNSC 22329579 + 22329559 22329599 41 TCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAGCAGCT TCCCCTACAGTTGGCCCTGGCAGGTAAGAGCAATAGCAGCT < 41bp 1 0.630487229268947 1 0.554352521896362 experiment 0.739025541462106 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329579 chr1:22329569 synonymous SNV . 0 11 hm5C_associated_SNPs_23926 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 13bp
chr7 45662289 45662289 1 + G C HNSC 45662274 + 45662254 45662294 41 GTTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG GTTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGCAGCTG < 41bp 1 0.447613777415007 1 0.584006726741791 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45662274 chr7:45662289 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_23927 0 0 1 0 2 ADCY1 chr7:45662231 3'AG 45662231 Downstream 59bp
chr7 45662289 45662289 1 + G C HNSC 45662274 + 45662254 45662294 41 GTTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG GTTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGCAGCTG < 41bp 1 0.447613777415007 1 0.584006726741791 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45662274 chr7:45662289 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_23927 0 0 1 0 2 ADCY1 chr7:45662342 5'GT 45662342 Upstream 54bp
chr14 71428976 71428976 1 + C A HNSC 71428988 + 71428968 71429008 41 TCTGAGTTCATCCGAGAGGCCACACCCCCAGTTGGTTGCAG TCTGAGTTAATCCGAGAGGCCACACCCCCAGTTGGTTGCAG < 41bp 1 0.137501313367373 1 0.0677918195724487 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71428988 chr14:71428976 nonsynonymous SNV 0.999 3 9 hm5C_associated_SNPs_23929 0 0 1 0 2 PCNX1 chr14:71428943 3'AG 71428943 Downstream 34bp
chr14 71428976 71428976 1 + C A HNSC 71428988 + 71428968 71429008 41 TCTGAGTTCATCCGAGAGGCCACACCCCCAGTTGGTTGCAG TCTGAGTTAATCCGAGAGGCCACACCCCCAGTTGGTTGCAG < 41bp 1 0.137501313367373 1 0.0677918195724487 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71428988 chr14:71428976 nonsynonymous SNV 0.999 3 9 hm5C_associated_SNPs_23929 0 0 1 0 2 PCNX1 chr14:71429048 5'GT 71429048 Upstream 73bp
chr7 133682292 133682292 1 + G C HNSC 133682272 + 133682252 133682292 41 TCCTGCTCAAGACAGCCACACGAACACGGATCTCCCCCCAG TCCTGCTCAAGACAGCCACACGAACACGGATCTCCCCCCAC < 41bp 1 0.219498333202051 1 0.0813802182674408 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133682272 chr7:133682292 nonsynonymous SNV 0.985 0 41 hm5C_associated_SNPs_23930 0 0 1 0 2 EXOC4 chr7:133682245 3'AG 133682245 Downstream 48bp
chr7 133682292 133682292 1 + G C HNSC 133682272 + 133682252 133682292 41 TCCTGCTCAAGACAGCCACACGAACACGGATCTCCCCCCAG TCCTGCTCAAGACAGCCACACGAACACGGATCTCCCCCCAC < 41bp 1 0.219498333202051 1 0.0813802182674408 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133682272 chr7:133682292 nonsynonymous SNV 0.985 0 41 hm5C_associated_SNPs_23930 0 0 1 0 2 EXOC4 chr7:133682386 5'GT 133682386 Upstream 95bp
chr7 133682292 133682292 1 + G C HNSC 133682276 + 133682256 133682296 41 GCTCAAGACAGCCACACGAACACGGATCTCCCCCCAGTGTC GCTCAAGACAGCCACACGAACACGGATCTCCCCCCACTGTC < 41bp 1 0.774472796191273 1 0.703158795833588 experiment 0.451054407617453 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133682276 chr7:133682292 nonsynonymous SNV 0.985 0 37 hm5C_associated_SNPs_23931 0 0 1 0 2 EXOC4 chr7:133682245 3'AG 133682245 Downstream 48bp
chr7 133682292 133682292 1 + G C HNSC 133682276 + 133682256 133682296 41 GCTCAAGACAGCCACACGAACACGGATCTCCCCCCAGTGTC GCTCAAGACAGCCACACGAACACGGATCTCCCCCCACTGTC < 41bp 1 0.774472796191273 1 0.703158795833588 experiment 0.451054407617453 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133682276 chr7:133682292 nonsynonymous SNV 0.985 0 37 hm5C_associated_SNPs_23931 0 0 1 0 2 EXOC4 chr7:133682386 5'GT 133682386 Upstream 95bp
chr7 133682292 133682292 1 + G C HNSC 133682278 + 133682258 133682298 41 TCAAGACAGCCACACGAACACGGATCTCCCCCCAGTGTCAG TCAAGACAGCCACACGAACACGGATCTCCCCCCACTGTCAG < 41bp 1 0.447885159728138 1 0.374985665082932 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133682278 chr7:133682292 nonsynonymous SNV 0.985 0 35 hm5C_associated_SNPs_23932 0 0 1 0 2 EXOC4 chr7:133682245 3'AG 133682245 Downstream 48bp
chr7 133682292 133682292 1 + G C HNSC 133682278 + 133682258 133682298 41 TCAAGACAGCCACACGAACACGGATCTCCCCCCAGTGTCAG TCAAGACAGCCACACGAACACGGATCTCCCCCCACTGTCAG < 41bp 1 0.447885159728138 1 0.374985665082932 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133682278 chr7:133682292 nonsynonymous SNV 0.985 0 35 hm5C_associated_SNPs_23932 0 0 1 0 2 EXOC4 chr7:133682386 5'GT 133682386 Upstream 95bp
chr13 111111187 111111187 1 + C A HNSC 111111171 + 111111151 111111191 41 ACGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAG ACGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACACAAG < 41bp 1 0.258953797415789 1 0.639045834541321 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111171 chr13:111111187 nonsynonymous SNV 0.987 2 37 hm5C_associated_SNPs_23933 0 0 0 0 2 COL4A2 chr13:111111118 3'AG 111111118 Downstream 70bp
chr13 111111187 111111187 1 + C A HNSC 111111171 + 111111151 111111191 41 ACGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAG ACGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACACAAG < 41bp 1 0.258953797415789 1 0.639045834541321 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111171 chr13:111111187 nonsynonymous SNV 0.987 2 37 hm5C_associated_SNPs_23933 0 0 0 0 2 COL4A2 chr13:111111281 5'GT 111111281 Upstream 95bp
chr13 111111187 111111187 1 + C A HNSC 111111172 + 111111152 111111192 41 CGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAGG CGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACACAAGG < 41bp 1 0.662981157310035 1 0.902889370918274 experiment 0.67403768537993 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111172 chr13:111111187 nonsynonymous SNV 0.987 2 36 hm5C_associated_SNPs_23934 0 0 0 0 2 COL4A2 chr13:111111118 3'AG 111111118 Downstream 70bp
chr13 111111187 111111187 1 + C A HNSC 111111172 + 111111152 111111192 41 CGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAGG CGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACACAAGG < 41bp 1 0.662981157310035 1 0.902889370918274 experiment 0.67403768537993 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111172 chr13:111111187 nonsynonymous SNV 0.987 2 36 hm5C_associated_SNPs_23934 0 0 0 0 2 COL4A2 chr13:111111281 5'GT 111111281 Upstream 95bp
chr19 18232697 18232697 1 + G A HNSC 18232699 + 18232679 18232719 41 TAGTCCTCGGAATTTCTCGGCTGCCTCTGCCCTAAATTTCC TAGTCCTCGGAATTTCTCAGCTGCCTCTGCCCTAAATTTCC < 41bp 1 0.0957364974787394 1 0.147381156682968 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST3 ENSG00000099308 CDS Human protein_coding chr19:18232699 chr19:18232697 synonymous SNV . 0 19 hm5C_associated_SNPs_23935 0 0 0 0 2 MAST3 chr19:18232660 3'AG 18232660 Downstream 38bp
chr19 18232697 18232697 1 + G A HNSC 18232699 + 18232679 18232719 41 TAGTCCTCGGAATTTCTCGGCTGCCTCTGCCCTAAATTTCC TAGTCCTCGGAATTTCTCAGCTGCCTCTGCCCTAAATTTCC < 41bp 1 0.0957364974787394 1 0.147381156682968 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST3 ENSG00000099308 CDS Human protein_coding chr19:18232699 chr19:18232697 synonymous SNV . 0 19 hm5C_associated_SNPs_23935 0 0 0 0 2 MAST3 chr19:18232732 5'GT 18232732 Upstream 36bp
chr3 37090050 37090050 1 + G C HNSC 37090068 + 37090048 37090088 41 ATGTGCCCCCTTTGGAGGGACTGCCTATCTTCATTCTTCGA ATCTGCCCCCTTTGGAGGGACTGCCTATCTTCATTCTTCGA < 41bp 1 0.384436404097982 1 0.0526585876941681 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MLH1 ENSG00000076242 CDS Human protein_coding chr3:37090068 chr3:37090050 nonsynonymous SNV 1.000 2 3 hm5C_associated_SNPs_23942 0 0 1 0 2 MLH1 chr3:37090008 3'AG 37090008 Downstream 43bp
chr3 37090050 37090050 1 + G C HNSC 37090068 + 37090048 37090088 41 ATGTGCCCCCTTTGGAGGGACTGCCTATCTTCATTCTTCGA ATCTGCCCCCTTTGGAGGGACTGCCTATCTTCATTCTTCGA < 41bp 1 0.384436404097982 1 0.0526585876941681 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MLH1 ENSG00000076242 CDS Human protein_coding chr3:37090068 chr3:37090050 nonsynonymous SNV 1.000 2 3 hm5C_associated_SNPs_23942 0 0 1 0 2 MLH1 chr3:37090100 5'GT 37090100 Upstream 51bp
chr8 145065441 145065441 1 + C T HNSC 145065439 + 145065419 145065459 41 TCTGGGGACAACTATCCTCCCCCCAACCCTGGATATCCGGG TCTGGGGACAACTATCCTCCCCTCAACCCTGGATATCCGGG < 41bp 1 0.16803743103628 1 0.0836500823497772 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065439 chr8:145065441 nonsynonymous SNV 0.738 0 23 hm5C_associated_SNPs_23944 0 0 1 0 1 GRINA chr8:145065368 3'AG 145065368 Downstream 74bp
chr7 99159525 99159525 1 + C T HNSC 99159535 + 99159515 99159555 41 ACCTGTTCCTCAGGTGCCTGCTCTTCCCCGTGAGGGAAGCC ACCTGTTCCTTAGGTGCCTGCTCTTCCCCGTGAGGGAAGCC < 41bp 1 0.202122347461825 1 0.0691644549369812 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF655 ENSG00000197343 CDS Human protein_coding chr7:99159535 chr7:99159525 stopgain 1.000 0 11 hm5C_associated_SNPs_23946 0 0 1 0 2 ZNF655 chr7:99159511 3'AG 99159511 Downstream 15bp
chr7 99159525 99159525 1 + C T HNSC 99159535 + 99159515 99159555 41 ACCTGTTCCTCAGGTGCCTGCTCTTCCCCGTGAGGGAAGCC ACCTGTTCCTTAGGTGCCTGCTCTTCCCCGTGAGGGAAGCC < 41bp 1 0.202122347461825 1 0.0691644549369812 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF655 ENSG00000197343 CDS Human protein_coding chr7:99159535 chr7:99159525 stopgain 1.000 0 11 hm5C_associated_SNPs_23946 0 0 1 0 2 ZNF655 chr7:99159596 5'GT 99159596 Upstream 72bp
chr20 42089355 42089355 1 + G C HNSC 42089358 + 42089338 42089378 41 TCCAGTTCCAGGTCGCGGAGCAAAGGTCGATCACGTTCTCG TCCAGTTCCAGGTCGCGCAGCAAAGGTCGATCACGTTCTCG < 41bp 1 0.48026491751267 1 0.393512934446335 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089358 chr20:42089355 synonymous SNV . 0 18 hm5C_associated_SNPs_23947 0 0 1 0 1 SRSF6 chr20:42089343 3'AG 42089343 Downstream 13bp
chr1 161326611 161326611 1 + G A HNSC 161326622 + 161326602 161326642 41 ATCATACCTGGAATGGGATCCGACACTTGGTAAGTTAATTC ATCATACCTAGAATGGGATCCGACACTTGGTAAGTTAATTC < 41bp 1 0.522729711778792 1 0.382539927959442 experiment 0.954540576442416 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SDHC ENSG00000143252 CDS Human protein_coding chr1:161326622 chr1:161326611 stopgain 0.976 1 10 hm5C_associated_SNPs_23949 0 0 1 0 1 SDHC chr1:161326630 5'GT 161326630 Upstream 20bp
chr16 67208838 67208838 1 + G A HNSC 67208843 + 67208823 67208863 41 TTCGAGGAAAGGGACGAGTCCGAAGGTGTGAGTCCGCCCAA TTCGAGGAAAGGGACAAGTCCGAAGGTGTGAGTCCGCCCAA < 41bp 1 0.75995780204054 1 0.421667039394379 experiment 0.48008439591892 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NOL3 ENSG00000140939 CDS Human protein_coding chr16:67208843 chr16:67208838 nonsynonymous SNV 0.162 1 16 hm5C_associated_SNPs_23950 0 0 0 0 1 NOL3 chr16:67208847 5'GT 67208847 Upstream 10bp
chr7 44733439 44733439 1 + G T HNSC 44733426 + 44733406 44733446 41 GCTACATGTTCCTTGCAGATCGGCTTCACCACCGACCCTCG GCTACATGTTCCTTGCAGATCGGCTTCACCACCTACCCTCG < 41bp 1 0.645942127875078 1 0.373750865459442 experiment 0.708115744249845 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44733426 chr7:44733439 nonsynonymous SNV 0.995 5 34 hm5C_associated_SNPs_23951 0 0 0 0 1 OGDH chr7:44733424 3'AG 44733424 Downstream 16bp
chr7 149426299 149426299 1 + G A HNSC 149426306 + 149426286 149426326 41 GGCTGAGGCCTGCGAGTCAGCCGTCTCGGGCAGGGTAGGGG GGCTGAGGCCTGCAAGTCAGCCGTCTCGGGCAGGGTAGGGG < 41bp 1 0.0316299710458575 1 0.267729908227921 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149426306 chr7:149426299 nonsynonymous SNV 0.002 1 14 hm5C_associated_SNPs_23952 0 0 0 0 2 KRBA1 chr7:149426279 3'AG 149426279 Downstream 21bp
chr7 149426299 149426299 1 + G A HNSC 149426306 + 149426286 149426326 41 GGCTGAGGCCTGCGAGTCAGCCGTCTCGGGCAGGGTAGGGG GGCTGAGGCCTGCAAGTCAGCCGTCTCGGGCAGGGTAGGGG < 41bp 1 0.0316299710458575 1 0.267729908227921 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149426306 chr7:149426299 nonsynonymous SNV 0.002 1 14 hm5C_associated_SNPs_23952 0 0 0 0 2 KRBA1;KRBA1 chr7:149426307 5'GT 149426307 Upstream 9bp
chr16 705335 705335 1 + C T HNSC 705347 + 705327 705367 41 GCAGTGTGCGGCTCTGGCGGCTGCGTGGCGGGGTGCTGCGT GCAGTGTGTGGCTCTGGCGGCTGCGTGGCGGGGTGCTGCGT < 41bp 1 0.49621745615477 1 0.401052474975586 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:705347 chr16:705335 nonsynonymous SNV 0.922 3 9 hm5C_associated_SNPs_23953 0 0 1 0 1 WDR90 chr16:705307 3'AG 705307 Downstream 29bp
chr6 26446172 26446172 1 + C T HNSC 26446158 + 26446138 26446178 41 TCTGGTGGGGGTGTATCCTGCATCATCAGAAATTCCCTCCT TCTGGTGGGGGTGTATCCTGCATCATCAGAAATTTCCTCCT < 41bp 1 0.683478647867921 1 0.329062521457672 experiment 0.633042704264157 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BTN3A3 ENSG00000111801 CDS Human protein_coding chr6:26446158 chr6:26446172 nonsynonymous SNV 0.042 2 35 hm5C_associated_SNPs_23955 0 0 0 0 1 BTN3A3 chr6:26446213 5'GT 26446213 Upstream 42bp
chr22 39826098 39826098 1 + C T HNSC 39826113 + 39826093 39826133 41 CTCTTCCGCTCCCGGCCCGCCCACTCGCTCCCGCCTGGCGA CTCTTTCGCTCCCGGCCCGCCCACTCGCTCCCGCCTGGCGA < 41bp 1 0.105096582739703 1 0.17353230714798 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TAB1 ENSG00000100324 CDS Human protein_coding chr22:39826113 chr22:39826098 synonymous SNV . 0 6 hm5C_associated_SNPs_23956 0 0 1 0 1 TAB1 chr22:39826020 3'AG 39826020 Downstream 79bp
chr6 33633651 33633651 1 + C A HNSC 33633637 + 33633617 33633657 41 TCATCCAGCTGCTGGAAGACCTGGTGTTCTTTGTCAGCGAT TCATCCAGCTGCTGGAAGACCTGGTGTTCTTTGTAAGCGAT < 41bp 1 0.420845708448222 1 0.196490347385406 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33633637 chr6:33633651 synonymous SNV . 0 35 hm5C_associated_SNPs_23957 0 0 1 0 1 ITPR3 chr6:33633612 3'AG 33633612 Downstream 40bp
chr11 9462025 9462025 1 + G A HNSC 9462007 + 9461987 9462027 41 ATTATGACTTGGCAGAGGAACTGGGGAGTGATGAAGATGAT ATTATGACTTGGCAGAGGAACTGGGGAGTGATGAAGATAAT < 41bp 1 0.609318835995741 1 0.454091876745224 experiment 0.781362328008518 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9462007 chr11:9462025 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_23958 0 0 1 0 1 IPO7 chr11:9462002 3'AG 9462002 Downstream 24bp
chr11 9462019 9462019 1 + G A HNSC 9462007 + 9461987 9462027 41 ATTATGACTTGGCAGAGGAACTGGGGAGTGATGAAGATGAT ATTATGACTTGGCAGAGGAACTGGGGAGTGATAAAGATGAT < 41bp 1 0.619516413979638 1 0.470552891492844 experiment 0.760967172040723 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9462007 chr11:9462019 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_23959 0 0 1 0 1 IPO7 chr11:9462002 3'AG 9462002 Downstream 18bp
chr6 30547717 30547717 1 + G A HNSC 30547729 + 30547709 30547749 41 CCGTATCTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAG CCGTATCTAAGGAACAGCAGCCTGCACTCAAGGGCAAAAAG < 41bp 1 0.0548648930325445 1 0.127831727266312 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30547729 chr6:30547717 nonsynonymous SNV 0.979 0 9 hm5C_associated_SNPs_23963 0 0 1 0 2 ABCF1 chr6:30547708 3'AG 30547708 Downstream 10bp
chr6 30547717 30547717 1 + G A HNSC 30547729 + 30547709 30547749 41 CCGTATCTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAG CCGTATCTAAGGAACAGCAGCCTGCACTCAAGGGCAAAAAG < 41bp 1 0.0548648930325445 1 0.127831727266312 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30547729 chr6:30547717 nonsynonymous SNV 0.979 0 9 hm5C_associated_SNPs_23963 0 0 1 0 2 ABCF1 chr6:30547782 5'GT 30547782 Upstream 66bp
chr6 30547717 30547717 1 + G A HNSC 30547735 + 30547715 30547755 41 CTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAGGGAAAG CTAAGGAACAGCAGCCTGCACTCAAGGGCAAAAAGGGAAAG < 41bp 1 0.5601424021401 1 0.328448534011841 experiment 0.8797151957198 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30547735 chr6:30547717 nonsynonymous SNV 0.979 0 3 hm5C_associated_SNPs_23964 0 0 1 0 2 ABCF1 chr6:30547708 3'AG 30547708 Downstream 10bp
chr6 30547717 30547717 1 + G A HNSC 30547735 + 30547715 30547755 41 CTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAGGGAAAG CTAAGGAACAGCAGCCTGCACTCAAGGGCAAAAAGGGAAAG < 41bp 1 0.5601424021401 1 0.328448534011841 experiment 0.8797151957198 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30547735 chr6:30547717 nonsynonymous SNV 0.979 0 3 hm5C_associated_SNPs_23964 0 0 1 0 2 ABCF1 chr6:30547782 5'GT 30547782 Upstream 66bp
chr14 69704350 69704350 1 + A T HNSC 69704365 + 69704345 69704385 41 ACCACAACTCCCACGATGTGCTGCTGCTCTGCACCTCCTGC ACCACTACTCCCACGATGTGCTGCTGCTCTGCACCTCCTGC < 41bp 1 0.513972034595044 1 0.0930755138397217 experiment 0.972055930809912 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EXD2 ENSG00000081177 CDS Human protein_coding chr14:69704365 chr14:69704350 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_23967 0 0 1 0 1 EXD2 chr14:69704292 3'AG 69704292 Downstream 59bp
chr17 79418800 79418800 1 + G A HNSC 79418808 + 79418788 79418828 41 CACTGCCCCAGCGCAGCCGCCCACAGCCAACCCCTGCAGCG CACTGCCCCAGCACAGCCGCCCACAGCCAACCCCTGCAGCG < 41bp 1 0.121890209997383 1 0.0703894197940826 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BAHCC1 ENSG00000171282 CDS Human other chr17:79418808 chr17:79418800 synonymous SNV . 0 13 hm5C_associated_SNPs_23968 0 0 1 0 1 BAHCC1 chr17:79418896 5'GT 79418896 Upstream 97bp
chr5 147819261 147819261 1 + C G HNSC 147819249 + 147819229 147819269 41 AGCAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGT AGCAGAAGCTATTTAGTGGTCCCTACCCCTATGACATCTGT < 41bp 1 0.217867009502366 1 0.0534871220588684 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819249 chr5:147819261 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_23970 0 0 1 0 2 FBXO38 chr5:147819210 3'AG 147819210 Downstream 52bp
chr5 147819261 147819261 1 + C G HNSC 147819249 + 147819229 147819269 41 AGCAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGT AGCAGAAGCTATTTAGTGGTCCCTACCCCTATGACATCTGT < 41bp 1 0.217867009502366 1 0.0534871220588684 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819249 chr5:147819261 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_23970 0 0 1 0 2 FBXO38 chr5:147819355 5'GT 147819355 Upstream 95bp
chr5 147819261 147819261 1 + C G HNSC 147819251 + 147819231 147819271 41 CAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGTAT CAGAAGCTATTTAGTGGTCCCTACCCCTATGACATCTGTAT < 41bp 1 0.129005656670887 1 0.0516937673091888 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819251 chr5:147819261 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_23971 0 0 1 0 2 FBXO38 chr5:147819210 3'AG 147819210 Downstream 52bp
chr5 147819261 147819261 1 + C G HNSC 147819251 + 147819231 147819271 41 CAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGTAT CAGAAGCTATTTAGTGGTCCCTACCCCTATGACATCTGTAT < 41bp 1 0.129005656670887 1 0.0516937673091888 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819251 chr5:147819261 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_23971 0 0 1 0 2 FBXO38 chr5:147819355 5'GT 147819355 Upstream 95bp
chr5 147819261 147819261 1 + C G HNSC 147819256 + 147819236 147819276 41 GCTATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCC GCTATTTAGTGGTCCCTACCCCTATGACATCTGTATTATCC < 41bp 1 0.124633820877563 1 0.215600520372391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819256 chr5:147819261 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_23972 0 0 1 0 2 FBXO38 chr5:147819210 3'AG 147819210 Downstream 52bp
chr5 147819261 147819261 1 + C G HNSC 147819256 + 147819236 147819276 41 GCTATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCC GCTATTTAGTGGTCCCTACCCCTATGACATCTGTATTATCC < 41bp 1 0.124633820877563 1 0.215600520372391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819256 chr5:147819261 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_23972 0 0 1 0 2 FBXO38 chr5:147819355 5'GT 147819355 Upstream 95bp
chr5 147819261 147819261 1 + C G HNSC 147819257 + 147819237 147819277 41 CTATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCCA CTATTTAGTGGTCCCTACCCCTATGACATCTGTATTATCCA < 41bp 1 0.200176876797356 1 0.363972723484039 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819257 chr5:147819261 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_23973 0 0 1 0 2 FBXO38 chr5:147819210 3'AG 147819210 Downstream 52bp
chr5 147819261 147819261 1 + C G HNSC 147819257 + 147819237 147819277 41 CTATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCCA CTATTTAGTGGTCCCTACCCCTATGACATCTGTATTATCCA < 41bp 1 0.200176876797356 1 0.363972723484039 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819257 chr5:147819261 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_23973 0 0 1 0 2 FBXO38 chr5:147819355 5'GT 147819355 Upstream 95bp
chr12 53671305 53671305 1 + G A HNSC 53671316 + 53671296 53671336 41 GAGGAATTTGAAGTCAATGACCTGAACTATGAAGATAAACT GAGGAATTTAAAGTCAATGACCTGAACTATGAAGATAAACT < 41bp 1 0.0548826153903518 1 0.0393885672092438 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53671316 chr12:53671305 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_23974 0 0 1 0 1 ESPL1 chr12:53671392 5'GT 53671392 Upstream 88bp
chr3 126708596 126708596 1 + G A HNSC 126708579 + 126708559 126708599 41 TCCTGCTACCGTGGTGAGGGCAAGCTCTCCCTGCCGTGGCT TCCTGCTACCGTGGTGAGGGCAAGCTCTCCCTGCCGTAGCT < 41bp 1 0.125411361964012 1 0.408017545938492 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126708579 chr3:126708596 stopgain 0.929 1 38 hm5C_associated_SNPs_23975 0 0 1 0 1 PLXNA1 chr3:126708630 5'GT 126708630 Upstream 35bp
chr19 47763905 47763905 1 + A T HNSC 47763890 + 47763870 47763910 41 GGTCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGG GGTCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCTAGGGG < 41bp 1 0.201279350614639 1 0.235941588878632 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763890 chr19:47763905 stopgain 0.982 0 36 hm5C_associated_SNPs_23976 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 61bp
chr19 47763905 47763905 1 + A T HNSC 47763891 + 47763871 47763911 41 GTCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGG GTCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCTAGGGGG < 41bp 1 0.72167129178451 1 0.38571885228157 experiment 0.55665741643098 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763891 chr19:47763905 stopgain 0.982 0 35 hm5C_associated_SNPs_23977 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 61bp
chr19 47763905 47763905 1 + A T HNSC 47763892 + 47763872 47763912 41 TCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGGG TCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCTAGGGGGG < 41bp 1 0.405318152382171 1 0.484268188476562 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763892 chr19:47763905 stopgain 0.982 0 34 hm5C_associated_SNPs_23978 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 61bp
chr19 47763905 47763905 1 + A T HNSC 47763893 + 47763873 47763913 41 CTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGGGC CTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCTAGGGGGGC < 41bp 1 0.588347298655556 1 0.73075407743454 experiment 0.823305402688888 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763893 chr19:47763905 stopgain 0.982 0 33 hm5C_associated_SNPs_23979 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 61bp
chr19 47763905 47763905 1 + A T HNSC 47763913 + 47763893 47763933 41 CCAGGGGCCAGCAAGGGGGGCCGGACTCCTCCACAGCAGGG CCAGGGGCCAGCTAGGGGGGCCGGACTCCTCCACAGCAGGG < 41bp 1 0.523938086766908 1 0.428337007761002 experiment 0.952123826466184 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763913 chr19:47763905 stopgain 0.982 0 13 hm5C_associated_SNPs_23980 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 61bp
chr1 78325024 78325024 1 + G C HNSC 78325041 + 78325021 78325061 41 GGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA GGACACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA < 41bp 1 0.209356797421082 1 0.142018228769302 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78325041 chr1:78325024 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_23982 0 0 1 3 2 MIGA1 chr1:78324999 3'AG 78324999 Downstream 26bp
chr1 78325024 78325024 1 + G C HNSC 78325041 + 78325021 78325061 41 GGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA GGACACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA < 41bp 1 0.209356797421082 1 0.142018228769302 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78325041 chr1:78325024 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_23982 0 0 1 3 2 MIGA1 chr1:78325071 5'GT 78325071 Upstream 48bp
chr9 100425264 100425264 1 + G A HNSC 100425251 + 100425231 100425271 41 AAAAGGTTTCATGAAGTCTTCAAAACCCTAGCTGAAAGTGA AAAAGGTTTCATGAAGTCTTCAAAACCCTAGCTAAAAGTGA < 41bp 1 0.234751777070557 1 0.517305254936218 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100425251 chr9:100425264 nonsynonymous SNV 0.996 1 34 hm5C_associated_SNPs_23983 0 0 1 0 2 NCBP1 chr9:100425236 3'AG 100425236 Downstream 29bp
chr9 100425264 100425264 1 + G A HNSC 100425251 + 100425231 100425271 41 AAAAGGTTTCATGAAGTCTTCAAAACCCTAGCTGAAAGTGA AAAAGGTTTCATGAAGTCTTCAAAACCCTAGCTAAAAGTGA < 41bp 1 0.234751777070557 1 0.517305254936218 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100425251 chr9:100425264 nonsynonymous SNV 0.996 1 34 hm5C_associated_SNPs_23983 0 0 1 0 2 NCBP1 chr9:100425329 5'GT 100425329 Upstream 66bp
chrX 41048594 41048594 1 + C T HNSC 41048581 + 41048561 41048601 41 GACCAATGCAGGCAATGAGCCAGACTTGGAAGACGAACAGG GACCAATGCAGGCAATGAGCCAGACTTGGAAGATGAACAGG < 41bp 1 0.166694844796217 1 0.433756530284882 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41048581 chrX:41048594 synonymous SNV . 0 34 hm5C_associated_SNPs_23984 0 0 1 0 1 USP9X chrX:41048562 3'AG 41048562 Downstream 33bp
chr9 18721646 18721646 1 + G A HNSC 18721629 + 18721609 18721649 41 GCCGCCGGCCCCCACAGCTCCTGAAGTCCTGCAATTTGGAT GCCGCCGGCCCCCACAGCTCCTGAAGTCCTGCAATTTAGAT < 41bp 1 0.401188598553422 1 0.394294619560242 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18721629 chr9:18721646 synonymous SNV . 0 38 hm5C_associated_SNPs_23985 0 0 0 0 1 ADAMTSL1 chr9:18721663 5'GT 18721663 Upstream 18bp
chr6 30860256 30860256 1 + C T HNSC 30860273 + 30860253 30860293 41 TTTCTGCAGTGCCGCTTCCTCTTTGCGGGGCCCTGGTTACT TTTTTGCAGTGCCGCTTCCTCTTTGCGGGGCCCTGGTTACT < 41bp 1 0.283613904616037 1 0.0968198478221893 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDR1 ENSG00000204580 CDS Human protein_coding chr6:30860273 chr6:30860256 synonymous SNV . 0 4 hm5C_associated_SNPs_23988 0 0 1 0 1 DDR1 chr6:30860319 5'GT 30860319 Upstream 64bp
chr10 129141970 129141970 1 + G C HNSC 129141950 + 129141930 129141970 41 CCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCAACTGG CCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCAACTGC < 41bp 1 0.535232379742146 1 0.861252009868622 experiment 0.929535240515708 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141950 chr10:129141970 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_23989 0 0 0 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 61bp
chr10 129141970 129141970 1 + G C HNSC 129141950 + 129141930 129141970 41 CCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCAACTGG CCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCAACTGC < 41bp 1 0.535232379742146 1 0.861252009868622 experiment 0.929535240515708 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141950 chr10:129141970 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_23989 0 0 0 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 41bp
chr10 129141970 129141970 1 + G C HNSC 129141960 + 129141940 129141980 41 GCTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTC GCTTTCCTTACTCAAGAGTCCCTGCAACTGCAGAATTTTTC < 41bp 1 0.0115269011021158 1 0.0309551060199738 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141960 chr10:129141970 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_23990 0 0 0 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 61bp
chr10 129141970 129141970 1 + G C HNSC 129141960 + 129141940 129141980 41 GCTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTC GCTTTCCTTACTCAAGAGTCCCTGCAACTGCAGAATTTTTC < 41bp 1 0.0115269011021158 1 0.0309551060199738 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141960 chr10:129141970 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_23990 0 0 0 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 41bp
chr10 129141970 129141970 1 + G C HNSC 129141961 + 129141941 129141981 41 CTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCA CTTTCCTTACTCAAGAGTCCCTGCAACTGCAGAATTTTTCA < 41bp 1 0.237021227157086 1 0.184007167816162 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141961 chr10:129141970 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_23991 0 0 0 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 61bp
chr10 129141970 129141970 1 + G C HNSC 129141961 + 129141941 129141981 41 CTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCA CTTTCCTTACTCAAGAGTCCCTGCAACTGCAGAATTTTTCA < 41bp 1 0.237021227157086 1 0.184007167816162 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141961 chr10:129141970 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_23991 0 0 0 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 41bp
chr10 129141970 129141970 1 + G C HNSC 129141964 + 129141944 129141984 41 TCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGT TCCTTACTCAAGAGTCCCTGCAACTGCAGAATTTTTCAAGT < 41bp 1 0.0849138745938764 1 0.194601982831955 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141964 chr10:129141970 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_23992 0 0 0 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 61bp
chr10 129141970 129141970 1 + G C HNSC 129141964 + 129141944 129141984 41 TCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGT TCCTTACTCAAGAGTCCCTGCAACTGCAGAATTTTTCAAGT < 41bp 1 0.0849138745938764 1 0.194601982831955 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141964 chr10:129141970 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_23992 0 0 0 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 41bp
chr10 129141970 129141970 1 + G C HNSC 129141967 + 129141947 129141987 41 TTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGTGCC TTACTCAAGAGTCCCTGCAACTGCAGAATTTTTCAAGTGCC < 41bp 1 0.360517780929618 1 0.439992606639862 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141967 chr10:129141970 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_23993 0 0 0 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 61bp
chr10 129141970 129141970 1 + G C HNSC 129141967 + 129141947 129141987 41 TTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGTGCC TTACTCAAGAGTCCCTGCAACTGCAGAATTTTTCAAGTGCC < 41bp 1 0.360517780929618 1 0.439992606639862 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141967 chr10:129141970 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_23993 0 0 0 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 41bp
chr10 129141970 129141970 1 + G C HNSC 129141980 + 129141960 129142000 41 CCTGCAACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAA CCTGCAACTGCAGAATTTTTCAAGTGCCAAGAGAGCCAAAA < 41bp 1 0.337788026639934 1 0.931912004947662 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141980 chr10:129141970 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_23994 0 0 0 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 61bp
chr10 129141970 129141970 1 + G C HNSC 129141980 + 129141960 129142000 41 CCTGCAACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAA CCTGCAACTGCAGAATTTTTCAAGTGCCAAGAGAGCCAAAA < 41bp 1 0.337788026639934 1 0.931912004947662 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141980 chr10:129141970 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_23994 0 0 0 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 41bp
chr10 129141970 129141970 1 + G C HNSC 129141986 + 129141966 129142006 41 ACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTA ACTGCAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTA < 41bp 1 0.0365244319058073 1 0.215105414390564 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141986 chr10:129141970 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_23995 0 0 0 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 61bp
chr10 129141970 129141970 1 + G C HNSC 129141986 + 129141966 129142006 41 ACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTA ACTGCAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTA < 41bp 1 0.0365244319058073 1 0.215105414390564 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141986 chr10:129141970 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_23995 0 0 0 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 41bp
chr10 129141970 129141970 1 + G C HNSC 129141987 + 129141967 129142007 41 CTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAA CTGCAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAA < 41bp 1 0.475982085410083 1 0.669103860855103 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141987 chr10:129141970 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_23996 0 0 0 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 61bp
chr10 129141970 129141970 1 + G C HNSC 129141987 + 129141967 129142007 41 CTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAA CTGCAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAA < 41bp 1 0.475982085410083 1 0.669103860855103 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141987 chr10:129141970 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_23996 0 0 0 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 41bp
chr8 104343656 104343656 1 + C G HNSC 104343665 + 104343645 104343685 41 CCAAGCAGCCTCAAAGGTTCCACATCTCTGCTTGTTCACCC CCAAGCAGCCTGAAAGGTTCCACATCTCTGCTTGTTCACCC < 41bp 1 0.55124494209921 1 0.0575250089168549 experiment 0.897510115801581 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FZD6 ENSG00000164930 CDS Human protein_coding chr8:104343665 chr8:104343656 synonymous SNV . 0 12 hm5C_associated_SNPs_23997 0 0 1 0 1 FZD6 chr8:104343569 3'AG 104343569 Downstream 88bp
chr19 16314374 16314374 1 + C T HNSC 16314393 + 16314373 16314413 41 TCCTGGCCCACGGGGGGGTCCGTTTCATGTGGATCAAACAC TTCTGGCCCACGGGGGGGTCCGTTTCATGTGGATCAAACAC < 41bp 1 0.0871270130254072 1 0.167800456285477 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16314393 chr19:16314374 synonymous SNV . 0 2 hm5C_associated_SNPs_23998 0 0 1 0 1 AP1M1 chr19:16314426 5'GT 16314426 Upstream 53bp
chr17 55075841 55075841 1 + G T HNSC 55075847 + 55075827 55075867 41 TCAAAATTATTCCTGAGGATCAATCCTGGGGAGGTACTTAT TCAAAATTATTCCTTAGGATCAATCCTGGGGAGGTACTTAT < 41bp 1 0.10106217003506 1 0.0596193671226501 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55075847 chr17:55075841 stopgain 0.926 0 15 hm5C_associated_SNPs_23999 0 0 1 0 2 SCPEP1 chr17:55075746 3'AG 55075746 Downstream 96bp
chr17 55075841 55075841 1 + G T HNSC 55075847 + 55075827 55075867 41 TCAAAATTATTCCTGAGGATCAATCCTGGGGAGGTACTTAT TCAAAATTATTCCTTAGGATCAATCCTGGGGAGGTACTTAT < 41bp 1 0.10106217003506 1 0.0596193671226501 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55075847 chr17:55075841 stopgain 0.926 0 15 hm5C_associated_SNPs_23999 0 0 1 0 2 SCPEP1 chr17:55075859 5'GT 55075859 Upstream 19bp
chr12 95868071 95868071 1 + G C HNSC 95868059 + 95868039 95868079 41 CTCTACGGCTGAGGAAGCAGCCAAGAAAAAAAGACGAAAGA CTCTACGGCTGAGGAAGCAGCCAAGAAAAAAACACGAAAGA < 41bp 1 0.344351028118365 1 0.539569616317749 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95868059 chr12:95868071 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_24000 0 0 1 0 1 METAP2 chr12:95868106 5'GT 95868106 Upstream 36bp
chr5 14291310 14291310 1 + G A HNSC 14291323 + 14291303 14291343 41 TCCAGCTGAGGCTGTTTGAACAGGATGCTGAGAAGGTAAAG TCCAGCTAAGGCTGTTTGAACAGGATGCTGAGAAGGTAAAG < 41bp 1 0.514136781789559 1 0.70270049571991 experiment 0.971726436420883 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14291323 chr5:14291310 synonymous SNV . 0 8 hm5C_associated_SNPs_24001 0 0 1 0 1 TRIO chr5:14291337 5'GT 14291337 Upstream 28bp
chr5 176519745 176519745 1 + C T HNSC 176519758 + 176519738 176519778 41 ATTCCATCGGCCTCTCCTACCAGTCTGCCTGGCTCACGGTG ATTCCATTGGCCTCTCCTACCAGTCTGCCTGGCTCACGGTG < 41bp 1 0.347222915681765 1 0.252241671085358 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176519758 chr5:176519745 synonymous SNV . 0 8 hm5C_associated_SNPs_24003 0 0 1 0 2 FGFR4 chr5:176519647 3'AG 176519647 Downstream 99bp
chr5 176519745 176519745 1 + C T HNSC 176519758 + 176519738 176519778 41 ATTCCATCGGCCTCTCCTACCAGTCTGCCTGGCTCACGGTG ATTCCATTGGCCTCTCCTACCAGTCTGCCTGGCTCACGGTG < 41bp 1 0.347222915681765 1 0.252241671085358 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176519758 chr5:176519745 synonymous SNV . 0 8 hm5C_associated_SNPs_24003 0 0 1 0 2 FGFR4 chr5:176519785 5'GT 176519785 Upstream 41bp
chr20 47691914 47691914 1 + G C HNSC 47691921 + 47691901 47691941 41 ATGCAAGTTTTTTGAGGGACCTGTGACAGGAATCTTCTCTG ATGCAAGTTTTTTCAGGGACCTGTGACAGGAATCTTCTCTG < 41bp 1 0.507572158057377 1 0.294566512107849 experiment 0.984855683885247 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CSE1L ENSG00000124207 CDS Human protein_coding chr20:47691921 chr20:47691914 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_24004 0 0 1 0 1 CSE1L chr20:47691855 3'AG 47691855 Downstream 60bp
chr19 50902122 50902122 1 + G A HNSC 50902140 + 50902120 50902160 41 GCGGCGGCCAGGCCCAGGGCCCGGGGTGCCCCCAAAGCGGG GCAGCGGCCAGGCCCAGGGCCCGGGGTGCCCCCAAAGCGGG < 41bp 1 0.512366883457633 1 0.68350213766098 experiment 0.975266233084734 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50902140 chr19:50902122 nonsynonymous SNV 0.999 1 3 hm5C_associated_SNPs_24005 1 0 1 0 1 POLD1 chr19:50902105 3'AG 50902105 Downstream 18bp
chr19 50902122 50902122 1 + G A HNSC 50902141 + 50902121 50902161 41 CGGCGGCCAGGCCCAGGGCCCGGGGTGCCCCCAAAGCGGGC CAGCGGCCAGGCCCAGGGCCCGGGGTGCCCCCAAAGCGGGC < 41bp 1 0.740271299727018 1 0.807937502861023 experiment 0.519457400545963 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50902141 chr19:50902122 nonsynonymous SNV 0.999 1 2 hm5C_associated_SNPs_24006 1 0 1 0 1 POLD1 chr19:50902105 3'AG 50902105 Downstream 18bp
chr22 20755021 20755021 1 + G C HNSC 20755030 + 20755010 20755050 41 ATGTGATGTTGGAGAACTACCAGAACCTTCTTGCCCTAGGT ATGTGATGTTGCAGAACTACCAGAACCTTCTTGCCCTAGGT < 41bp 1 0.704080707787985 1 0.553747534751892 experiment 0.59183858442403 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF74 ENSG00000185252 CDS Human protein_coding chr22:20755030 chr22:20755021 nonsynonymous SNV 0.998 3 12 hm5C_associated_SNPs_24008 0 0 1 0 2 ZNF74 chr22:20754922 3'AG 20754922 Downstream 100bp
chr22 20755021 20755021 1 + G C HNSC 20755030 + 20755010 20755050 41 ATGTGATGTTGGAGAACTACCAGAACCTTCTTGCCCTAGGT ATGTGATGTTGCAGAACTACCAGAACCTTCTTGCCCTAGGT < 41bp 1 0.704080707787985 1 0.553747534751892 experiment 0.59183858442403 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF74 ENSG00000185252 CDS Human protein_coding chr22:20755030 chr22:20755021 nonsynonymous SNV 0.998 3 12 hm5C_associated_SNPs_24008 0 0 1 0 2 ZNF74 chr22:20755048 5'GT 20755048 Upstream 28bp
chr22 30038255 30038255 1 + C T HNSC 30038248 + 30038228 30038268 41 CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG CTCCTGAGGCTTCTGTGCTCCTGGCTTTTTACGCCGTCCAG < 41bp 1 0.657675514844811 1 0.237353056669235 experiment 0.684648970310377 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30038248 chr22:30038255 nonsynonymous SNV 0.882 4 28 hm5C_associated_SNPs_24009 0 0 1 0 2 NF2 chr22:30038191 3'AG 30038191 Downstream 65bp
chr22 30038255 30038255 1 + C T HNSC 30038248 + 30038228 30038268 41 CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG CTCCTGAGGCTTCTGTGCTCCTGGCTTTTTACGCCGTCCAG < 41bp 1 0.657675514844811 1 0.237353056669235 experiment 0.684648970310377 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30038248 chr22:30038255 nonsynonymous SNV 0.882 4 28 hm5C_associated_SNPs_24009 0 0 1 0 2 NF2 chr22:30038274 5'GT 30038274 Upstream 20bp
chr22 38258977 38258977 1 + G A HNSC 38258983 + 38258963 38259003 41 GTTTTCTTTACAGGGGGGACCTTCCTTGGAGCAGAGGTTTG GTTTTCTTTACAGGAGGGACCTTCCTTGGAGCAGAGGTTTG < 41bp 1 0.0676454539018355 1 0.193387418985367 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF3L ENSG00000100129 CDS Human protein_coding chr22:38258983 chr22:38258977 nonsynonymous SNV 0.997 2 15 hm5C_associated_SNPs_24010 0 0 1 0 2 EIF3L chr22:38258976 3'AG 38258976 Downstream 2bp
chr22 38258977 38258977 1 + G A HNSC 38258983 + 38258963 38259003 41 GTTTTCTTTACAGGGGGGACCTTCCTTGGAGCAGAGGTTTG GTTTTCTTTACAGGAGGGACCTTCCTTGGAGCAGAGGTTTG < 41bp 1 0.0676454539018355 1 0.193387418985367 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF3L ENSG00000100129 CDS Human protein_coding chr22:38258983 chr22:38258977 nonsynonymous SNV 0.997 2 15 hm5C_associated_SNPs_24010 0 0 1 0 2 EIF3L chr22:38259045 5'GT 38259045 Upstream 69bp
chr11 65396095 65396095 1 + C T HNSC 65396110 + 65396090 65396130 41 CGTTTCGTGCTGACCTACATCGCGCCCTGGCAGATCACCTG CGTTTTGTGCTGACCTACATCGCGCCCTGGCAGATCACCTG < 41bp 1 0.509478921076695 1 0.56300950050354 experiment 0.981042157846611 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65396110 chr11:65396095 synonymous SNV . 0 6 hm5C_associated_SNPs_24011 0 0 1 0 2 PCNX3 chr11:65396066 3'AG 65396066 Downstream 30bp
chr11 65396095 65396095 1 + C T HNSC 65396110 + 65396090 65396130 41 CGTTTCGTGCTGACCTACATCGCGCCCTGGCAGATCACCTG CGTTTTGTGCTGACCTACATCGCGCCCTGGCAGATCACCTG < 41bp 1 0.509478921076695 1 0.56300950050354 experiment 0.981042157846611 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65396110 chr11:65396095 synonymous SNV . 0 6 hm5C_associated_SNPs_24011 0 0 1 0 2 PCNX3 chr11:65396174 5'GT 65396174 Upstream 80bp
chr1 40525048 40525048 1 + A T HNSC 40525031 + 40525011 40525051 41 GGTCCATTATGGCTGACATGCAAAATCTGGTAGAAAGATTG GGTCCATTATGGCTGACATGCAAAATCTGGTAGAAAGTTTG < 41bp 1 0.566609929032918 1 0.70043683052063 experiment 0.866780141934163 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAP1 ENSG00000131236 CDS Human protein_coding chr1:40525031 chr1:40525048 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_24012 0 0 1 1 3 CAP1 chr1:40525006 3'AG 40525006 Downstream 43bp
chr1 40525048 40525048 1 + A T HNSC 40525031 + 40525011 40525051 41 GGTCCATTATGGCTGACATGCAAAATCTGGTAGAAAGATTG GGTCCATTATGGCTGACATGCAAAATCTGGTAGAAAGTTTG < 41bp 1 0.566609929032918 1 0.70043683052063 experiment 0.866780141934163 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAP1 ENSG00000131236 CDS Human protein_coding chr1:40525031 chr1:40525048 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_24012 0 0 1 1 3 CAP1 chr1:40525009 3'AG 40525009 Downstream 40bp
chr1 40525048 40525048 1 + A T HNSC 40525031 + 40525011 40525051 41 GGTCCATTATGGCTGACATGCAAAATCTGGTAGAAAGATTG GGTCCATTATGGCTGACATGCAAAATCTGGTAGAAAGTTTG < 41bp 1 0.566609929032918 1 0.70043683052063 experiment 0.866780141934163 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAP1 ENSG00000131236 CDS Human protein_coding chr1:40525031 chr1:40525048 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_24012 0 0 1 1 3 CAP1 chr1:40525130 5'GT 40525130 Upstream 83bp
chr7 98563391 98563391 1 + G A HNSC 98563380 + 98563360 98563400 41 ACGCGCCTGGCAGTGATGAGCATGGAGATGCGGAAGAACTT ACGCGCCTGGCAGTGATGAGCATGGAGATGCAGAAGAACTT < 41bp 1 0.184343492602665 1 0.390172958374023 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98563380 chr7:98563391 nonsynonymous SNV 0.999 4 32 hm5C_associated_SNPs_24013 0 0 1 0 1 TRRAP chr7:98563319 3'AG 98563319 Downstream 73bp
chr1 183083794 183083794 1 + G C HNSC 183083799 + 183083779 183083819 41 TGTGAGAGGTGCCGAGAGAACTTCTTCCGCCTTGGCAACAA TGTGAGAGGTGCCGACAGAACTTCTTCCGCCTTGGCAACAA < 41bp 1 0.398274205710095 1 0.151609361171722 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183083799 chr1:183083794 nonsynonymous SNV 0.966 2 16 hm5C_associated_SNPs_24014 0 0 1 0 1 LAMC1 chr1:183083854 5'GT 183083854 Upstream 61bp
chr5 74638523 74638523 1 + G A HNSC 74638509 + 74638489 74638529 41 TCATAGTGGGGACAGTGACACTGACCATCTGCATGATGTCC TCATAGTGGGGACAGTGACACTGACCATCTGCATAATGTCC < 41bp 1 0.316133536032819 1 0.123882442712784 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMGCR ENSG00000113161 CDS Human protein_coding chr5:74638509 chr5:74638523 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_24015 0 0 1 0 1 HMGCR chr5:74638595 5'GT 74638595 Upstream 73bp
chr5 115628170 115628170 1 + T C HNSC 115628155 + 115628135 115628175 41 TCTTTGTAAATAGCTAGAGACTATACAAGCACAGCTGGATT TCTTTGTAAATAGCTAGAGACTATACAAGCACAGCCGGATT < 41bp 1 0.385505214895597 1 0.42743057012558 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COMMD10 ENSG00000145781 CDS Human protein_coding chr5:115628155 chr5:115628170 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_24016 0 0 1 0 1 COMMD10 chr5:115628148 3'AG 115628148 Downstream 23bp
chr8 145662239 145662239 1 - T C HNSC 145662226 - 145662206 145662246 41 GCTGCGAAGGCATCACCCCCCTCCACGATGCCCTCAACTGT GCTGCGAGGGCATCACCCCCCTCCACGATGCCCTCAACTGT < 41bp 1 0.64587265385943 1 0.89185893535614 experiment 0.708254692281139 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TONSL ENSG00000160949 CDS Human protein_coding chr8:145662226 chr8:145662239 synonymous SNV . 0 8 hm5C_associated_SNPs_24017 0 0 1 0 2 TONSL chr8:145662140 5'GT 145662140 Upstream 100bp
chr8 145662239 145662239 1 - T C HNSC 145662226 - 145662206 145662246 41 GCTGCGAAGGCATCACCCCCCTCCACGATGCCCTCAACTGT GCTGCGAGGGCATCACCCCCCTCCACGATGCCCTCAACTGT < 41bp 1 0.64587265385943 1 0.89185893535614 experiment 0.708254692281139 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TONSL ENSG00000160949 CDS Human protein_coding chr8:145662226 chr8:145662239 synonymous SNV . 0 8 hm5C_associated_SNPs_24017 0 0 1 0 2 TONSL chr8:145662303 3'AG 145662303 Downstream 65bp
chr20 33033227 33033227 1 + A T HNSC 33033240 + 33033220 33033260 41 AGCTTCAAGGAGCAATGCAGCAGTTTAACCAGAGATTCATT AGCTTCATGGAGCAATGCAGCAGTTTAACCAGAGATTCATT < 41bp 1 0.202011048459529 1 0.37555006146431 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ITCH ENSG00000078747 CDS Human protein_coding chr20:33033240 chr20:33033227 nonsynonymous SNV 0.999 3 8 hm5C_associated_SNPs_24018 0 0 1 0 1 ITCH chr20:33033266 5'GT 33033266 Upstream 40bp
chr11 25004816 25004816 1 + C A HNSC 25004826 + 25004806 25004846 41 CTCTAAGCTTCCAGATGCAGCGGCCAAAAGCAAGGTACCTA CTCTAAGCTTACAGATGCAGCGGCCAAAAGCAAGGTACCTA < 41bp 1 0.296093612330681 1 0.261888414621353 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LUZP2 ENSG00000187398 CDS Human protein_coding chr11:25004826 chr11:25004816 nonsynonymous SNV 0.017 0 11 hm5C_associated_SNPs_24019 0 0 0 0 1 LUZP2 chr11:25004839 5'GT 25004839 Upstream 24bp
chr7 138944065 138944065 1 + A G HNSC 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TTGAGATGAAGAAGCGGAAGCGGAAAGGGGAAGGGGAAAAG < 41bp 1 0.538543202975917 1 0.596090793609619 experiment 0.922913594048167 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944065 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_24020 0 0 1 0 2 UBN2 chr7:138944013 3'AG 138944013 Downstream 53bp
chr7 138944065 138944065 1 + A G HNSC 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TTGAGATGAAGAAGCGGAAGCGGAAAGGGGAAGGGGAAAAG < 41bp 1 0.538543202975917 1 0.596090793609619 experiment 0.922913594048167 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944065 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_24020 0 0 1 0 2 UBN2 chr7:138944116 5'GT 138944116 Upstream 52bp
chr5 44815101 44815101 1 + C T HNSC 44815097 + 44815077 44815117 41 AAATACTTTTCCTTTTTCTGCTACCAGCTAAATACTTTGGC AAATACTTTTCCTTTTTCTGCTACTAGCTAAATACTTTGGC < 41bp 1 0.189525378782859 1 0.0819256007671356 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRPS30 ENSG00000112996 CDS Human protein_coding chr5:44815097 chr5:44815101 stopgain 1.000 1 25 hm5C_associated_SNPs_24021 0 0 1 0 1 MRPS30 chr5:44815015 3'AG 44815015 Downstream 87bp
chr3 183855540 183855540 1 + G A HNSC 183855522 + 183855502 183855542 41 GATGCCAAGGCTTTGGTGCGCTCTGACTTTCTTCTGGTGTA GATGCCAAGGCTTTGGTGCGCTCTGACTTTCTTCTGGTATA < 41bp 1 0.41157195652398 1 0.0923889875411987 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183855522 chr3:183855540 synonymous SNV . 0 39 hm5C_associated_SNPs_24022 0 0 1 0 1 EIF2B5 chr3:183855593 5'GT 183855593 Upstream 54bp
chr11 68177399 68177399 1 + C T HNSC 68177413 + 68177393 68177433 41 CGCCTTCATGAACGGGAGCTCGGTGGAGCACGTGGTGGAGT CGCCTTTATGAACGGGAGCTCGGTGGAGCACGTGGTGGAGT < 41bp 1 0.424588174672791 1 0.737326085567474 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68177413 chr11:68177399 synonymous SNV . 0 7 hm5C_associated_SNPs_24023 0 0 0 0 1 LRP5 chr11:68177382 3'AG 68177382 Downstream 18bp
chr8 28906499 28906499 1 + A T HNSC 28906481 + 28906461 28906501 41 TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATAGA TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATTGA < 41bp 1 0.266178621397999 1 0.685808777809143 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906481 chr8:28906499 synonymous SNV . 0 39 hm5C_associated_SNPs_24024 0 0 1 2 4 HMBOX1 chr8:28906471 3'AG 28906471 Downstream 29bp
chr8 28906499 28906499 1 + A T HNSC 28906481 + 28906461 28906501 41 TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATAGA TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATTGA < 41bp 1 0.266178621397999 1 0.685808777809143 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906481 chr8:28906499 synonymous SNV . 0 39 hm5C_associated_SNPs_24024 0 0 1 2 4 HMBOX1 chr8:28906474 3'AG 28906474 Downstream 26bp
chr8 28906499 28906499 1 + A T HNSC 28906481 + 28906461 28906501 41 TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATAGA TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATTGA < 41bp 1 0.266178621397999 1 0.685808777809143 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906481 chr8:28906499 synonymous SNV . 0 39 hm5C_associated_SNPs_24024 0 0 1 2 4 HMBOX1 chr8:28906477 3'AG 28906477 Downstream 23bp
chr8 28906499 28906499 1 + A T HNSC 28906481 + 28906461 28906501 41 TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATAGA TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATTGA < 41bp 1 0.266178621397999 1 0.685808777809143 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906481 chr8:28906499 synonymous SNV . 0 39 hm5C_associated_SNPs_24024 0 0 1 2 4 HMBOX1 chr8:28906565 5'GT 28906565 Upstream 67bp
chr8 28906499 28906499 1 + A T HNSC 28906512 + 28906492 28906532 41 ATGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT ATGGGATTGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT < 41bp 1 0.54382320291201 1 0.52836287021637 experiment 0.912353594175981 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906512 chr8:28906499 synonymous SNV . 0 8 hm5C_associated_SNPs_24025 0 0 1 2 4 HMBOX1 chr8:28906471 3'AG 28906471 Downstream 29bp
chr8 28906499 28906499 1 + A T HNSC 28906512 + 28906492 28906532 41 ATGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT ATGGGATTGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT < 41bp 1 0.54382320291201 1 0.52836287021637 experiment 0.912353594175981 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906512 chr8:28906499 synonymous SNV . 0 8 hm5C_associated_SNPs_24025 0 0 1 2 4 HMBOX1 chr8:28906474 3'AG 28906474 Downstream 26bp
chr8 28906499 28906499 1 + A T HNSC 28906512 + 28906492 28906532 41 ATGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT ATGGGATTGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT < 41bp 1 0.54382320291201 1 0.52836287021637 experiment 0.912353594175981 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906512 chr8:28906499 synonymous SNV . 0 8 hm5C_associated_SNPs_24025 0 0 1 2 4 HMBOX1 chr8:28906477 3'AG 28906477 Downstream 23bp
chr8 28906499 28906499 1 + A T HNSC 28906512 + 28906492 28906532 41 ATGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT ATGGGATTGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT < 41bp 1 0.54382320291201 1 0.52836287021637 experiment 0.912353594175981 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906512 chr8:28906499 synonymous SNV . 0 8 hm5C_associated_SNPs_24025 0 0 1 2 4 HMBOX1 chr8:28906565 5'GT 28906565 Upstream 67bp
chr2 207651558 207651558 1 + A T HNSC 207651570 + 207651550 207651590 41 GATGAATTACTTTCCCCTGGCTCCTTTTAATCAGCTTCTGC GATGAATTTCTTTCCCCTGGCTCCTTTTAATCAGCTTCTGC < 41bp 1 0.318696037981104 1 0.0853344202041626 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207651570 chr2:207651558 nonsynonymous SNV 0.421 1 9 hm5C_associated_SNPs_24027 0 0 1 0 1 FASTKD2 chr2:207651623 5'GT 207651623 Upstream 66bp
chr2 207651558 207651558 1 + A T HNSC 207651572 + 207651552 207651592 41 TGAATTACTTTCCCCTGGCTCCTTTTAATCAGCTTCTGCAA TGAATTTCTTTCCCCTGGCTCCTTTTAATCAGCTTCTGCAA < 41bp 1 0.0317314733487076 1 0.0139807164669037 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207651572 chr2:207651558 nonsynonymous SNV 0.421 1 7 hm5C_associated_SNPs_24028 0 0 1 0 1 FASTKD2 chr2:207651623 5'GT 207651623 Upstream 66bp
chr12 53495921 53495921 1 + C T HNSC 53495902 + 53495882 53495922 41 GGGCAAGTCCCTGCCAGGGTCTCCAGATGGCAATGGAAGCT GGGCAAGTCCCTGCCAGGGTCTCCAGATGGCAATGGAAGTT < 41bp 1 0.783413819797623 1 0.869113206863403 experiment 0.433172360404754 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IGFBP6 ENSG00000167779 CDS Human protein_coding chr12:53495902 chr12:53495921 synonymous SNV . 0 40 hm5C_associated_SNPs_24030 0 0 0 0 1 IGFBP6 chr12:53495829 3'AG 53495829 Downstream 93bp
chr12 53495921 53495921 1 + C T HNSC 53495923 + 53495903 53495943 41 TCCAGATGGCAATGGAAGCTCCTCCTGCCCCACTGGGAGTA TCCAGATGGCAATGGAAGTTCCTCCTGCCCCACTGGGAGTA < 41bp 1 0.120531821146496 1 0.122808247804642 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IGFBP6 ENSG00000167779 CDS Human protein_coding chr12:53495923 chr12:53495921 synonymous SNV . 0 19 hm5C_associated_SNPs_24031 0 0 0 0 1 IGFBP6 chr12:53495829 3'AG 53495829 Downstream 93bp
chrX 19373837 19373837 1 + G A HNSC 19373838 + 19373818 19373858 41 TATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT TATCCTGTGCGTCCGAGAGACAACAAGGTTTGCTGCTGCCT < 41bp 1 0.655817246918713 1 0.532493531703949 experiment 0.688365506162574 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19373838 chrX:19373837 nonsynonymous SNV 0.998 5 20 hm5C_associated_SNPs_24032 0 0 1 0 2 PDHA1 chrX:19373804 3'AG 19373804 Downstream 34bp
chrX 19373837 19373837 1 + G A HNSC 19373838 + 19373818 19373858 41 TATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT TATCCTGTGCGTCCGAGAGACAACAAGGTTTGCTGCTGCCT < 41bp 1 0.655817246918713 1 0.532493531703949 experiment 0.688365506162574 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19373838 chrX:19373837 nonsynonymous SNV 0.998 5 20 hm5C_associated_SNPs_24032 0 0 1 0 2 PDHA1 chrX:19373875 5'GT 19373875 Upstream 39bp
chr19 613894 613894 1 + G A HNSC 613878 + 613858 613898 41 GCCTGCTCACCCGGGGCCGCCGCACGGCGAGCGTGCGGGCT GCCTGCTCACCCGGGGCCGCCGCACGGCGAGCGTGCAGGCT < 41bp 1 0.225340722771907 1 0.186949670314789 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HCN2 ENSG00000099822 CDS Human protein_coding chr19:613878 chr19:613894 nonsynonymous SNV 0.970 3 37 hm5C_associated_SNPs_24033 0 0 0 0 1 HCN2 chr19:613852 3'AG 613852 Downstream 43bp
chr9 88622379 88622379 1 + A C HNSC 88622373 + 88622353 88622393 41 TGTCAGTCCTCCGGTGCTTTCCCCCAAGTAAGTATTGTAAG TGTCAGTCCTCCGGTGCTTTCCCCCACGTAAGTATTGTAAG < 41bp 1 0.197529268894606 1 0.463975876569748 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAA35 ENSG00000135040 CDS Human protein_coding chr9:88622373 chr9:88622379 nonsynonymous SNV 0.979 2 27 hm5C_associated_SNPs_24035 0 0 0 0 1 NAA35 chr9:88622379 5'GT 88622379 Upstream 1bp
chr9 88622379 88622379 1 + A C HNSC 88622374 + 88622354 88622394 41 GTCAGTCCTCCGGTGCTTTCCCCCAAGTAAGTATTGTAAGA GTCAGTCCTCCGGTGCTTTCCCCCACGTAAGTATTGTAAGA < 41bp 1 0.526864541781994 1 0.755307674407959 experiment 0.946270916436011 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAA35 ENSG00000135040 CDS Human protein_coding chr9:88622374 chr9:88622379 nonsynonymous SNV 0.979 2 26 hm5C_associated_SNPs_24036 0 0 0 0 1 NAA35 chr9:88622379 5'GT 88622379 Upstream 1bp
chr19 1255048 1255048 1 + G A HNSC 1255058 + 1255038 1255078 41 GGTCTTCTCAGGGACCTTCTCTGGTAGGTGTCACAGCACAT GGTCTTCTCAAGGACCTTCTCTGGTAGGTGTCACAGCACAT < 41bp 1 0.652852123817784 1 0.416120141744614 experiment 0.694295752364432 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MIDN ENSG00000167470 CDS Human protein_coding chr19:1255058 chr19:1255048 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_24037 0 0 1 0 1 MIDN chr19:1255060 5'GT 1255060 Upstream 13bp
chr11 6414491 6414491 1 + C T HNSC 6414500 + 6414480 6414520 41 GGTCTCCGCCTCATCTCTCTCAATATGAATTTTTGTTCCCG GGTCTCCGCCTTATCTCTCTCAATATGAATTTTTGTTCCCG < 41bp 1 0.419801885369215 1 0.702865481376648 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6414500 chr11:6414491 nonsynonymous SNV . 0 12 hm5C_associated_SNPs_24038 0 0 1 1 1 SMPD1 chr11:6414446 3'AG 6414446 Downstream 46bp
chr13 111287916 111287916 1 + C G HNSC 111287910 + 111287890 111287930 41 GTGGTCCAGAAAGGAGAGCGCGACATCCTCTCCAACGGCCA GTGGTCCAGAAAGGAGAGCGCGACATGCTCTCCAACGGCCA < 41bp 1 0.773864488235496 1 0.436787247657776 experiment 0.452271023529007 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NAXD ENSG00000213995 CDS Human protein_coding chr13:111287910 chr13:111287916 nonsynonymous SNV 0.003 2 27 hm5C_associated_SNPs_24039 0 0 1 0 1 NAXD chr13:111287820 3'AG 111287820 Downstream 97bp
chr19 5667168 5667168 1 + C G HNSC 5667169 + 5667149 5667189 41 GGGCCGGGGGCTGCCTCCTCCCCCCAGGTTTGTGTCCCACA GGGCCGGGGGCTGCCTCCTGCCCCCAGGTTTGTGTCCCACA < 41bp 1 0.20930276615298 1 0.141305357217789 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SAFB ENSG00000160633 CDS Human protein_coding chr19:5667169 chr19:5667168 nonsynonymous SNV 0.995 1 20 hm5C_associated_SNPs_24040 0 0 1 0 1 SAFB chr19:5667175 5'GT 5667175 Upstream 8bp
chr19 5667168 5667168 1 + C G HNSC 5667171 + 5667151 5667191 41 GCCGGGGGCTGCCTCCTCCCCCCAGGTTTGTGTCCCACACC GCCGGGGGCTGCCTCCTGCCCCCAGGTTTGTGTCCCACACC < 41bp 1 0.543995443158361 1 0.162350535392761 experiment 0.912009113683277 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SAFB ENSG00000160633 CDS Human protein_coding chr19:5667171 chr19:5667168 nonsynonymous SNV 0.995 1 18 hm5C_associated_SNPs_24041 0 0 1 0 1 SAFB chr19:5667175 5'GT 5667175 Upstream 8bp
chr19 5667168 5667168 1 + C G HNSC 5667172 + 5667152 5667192 41 CCGGGGGCTGCCTCCTCCCCCCAGGTTTGTGTCCCACACCC CCGGGGGCTGCCTCCTGCCCCCAGGTTTGTGTCCCACACCC < 41bp 1 0.628563816075231 1 0.592724561691284 experiment 0.742872367849539 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SAFB ENSG00000160633 CDS Human protein_coding chr19:5667172 chr19:5667168 nonsynonymous SNV 0.995 1 17 hm5C_associated_SNPs_24042 0 0 1 0 1 SAFB chr19:5667175 5'GT 5667175 Upstream 8bp
chr19 5667168 5667168 1 + C G HNSC 5667173 + 5667153 5667193 41 CGGGGGCTGCCTCCTCCCCCCAGGTTTGTGTCCCACACCCG CGGGGGCTGCCTCCTGCCCCCAGGTTTGTGTCCCACACCCG < 41bp 1 0.726937494670533 1 0.666199803352356 experiment 0.546125010658935 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SAFB ENSG00000160633 CDS Human protein_coding chr19:5667173 chr19:5667168 nonsynonymous SNV 0.995 1 16 hm5C_associated_SNPs_24043 0 0 1 0 1 SAFB chr19:5667175 5'GT 5667175 Upstream 8bp
chr17 57725621 57725621 1 + T A HNSC 57725620 + 57725600 57725640 41 GCAAAATCGTGTGGTGGGAGCTATGCAGCTATATTCTGTAG GCAAAATCGTGTGGTGGGAGCAATGCAGCTATATTCTGTAG < 41bp 1 0.223470476284165 1 0.181329548358917 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57725620 chr17:57725621 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_24045 0 0 1 0 1 CLTC chr17:57725601 3'AG 57725601 Downstream 21bp
chr3 180666565 180666565 1 + T A HNSC 180666572 + 180666552 180666592 41 GGAGCATGCAGAATTTTTTACCATCCAGAAACAACACAGCT GGAGCATGCAGAAATTTTTACCATCCAGAAACAACACAGCT < 41bp 1 0.0257362707889476 1 0.0688800513744354 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FXR1 ENSG00000114416 CDS Human protein_coding chr3:180666572 chr3:180666565 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_24046 0 0 0 0 2 FXR1 chr3:180666509 3'AG 180666509 Downstream 57bp
chr3 180666565 180666565 1 + T A HNSC 180666572 + 180666552 180666592 41 GGAGCATGCAGAATTTTTTACCATCCAGAAACAACACAGCT GGAGCATGCAGAAATTTTTACCATCCAGAAACAACACAGCT < 41bp 1 0.0257362707889476 1 0.0688800513744354 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FXR1 ENSG00000114416 CDS Human protein_coding chr3:180666572 chr3:180666565 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_24046 0 0 0 0 2 FXR1 chr3:180666602 5'GT 180666602 Upstream 38bp
chr7 44802519 44802519 1 + G A HNSC 44802539 + 44802519 44802559 41 GTCCGCTCGGTGCTGCAGGGCCTCCTCAAAAAGCGCCTCCT ATCCGCTCGGTGCTGCAGGGCCTCCTCAAAAAGCGCCTCCT < 41bp 1 0.0283469944220709 1 0.0226182341575623 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44802539 chr7:44802519 nonsynonymous SNV 0.011 3 1 hm5C_associated_SNPs_24048 0 0 1 0 1 ZMIZ2 chr7:44802480 3'AG 44802480 Downstream 40bp
chr1 203821361 203821361 1 + G A HNSC 203821365 + 203821345 203821385 41 AGCATGAAAACTCGCCGACTCAGCTCTGCCTCAACAGGAAA AGCATGAAAACTCGCCAACTCAGCTCTGCCTCAACAGGAAA < 41bp 1 0.503602027904211 1 0.370354473590851 experiment 0.992795944191578 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203821365 chr1:203821361 nonsynonymous SNV 0.975 1 17 hm5C_associated_SNPs_24049 0 0 0 0 1 ZC3H11A chr1:203821269 3'AG 203821269 Downstream 93bp
chr19 18254654 18254654 1 + G A HNSC 18254659 + 18254639 18254679 41 CAGCCCATCTCTCCTGAATACCATCAGCCTGGACACAATGC CAGCCCATCTCTCCTAAATACCATCAGCCTGGACACAATGC < 41bp 1 0.013492041275767 1 0.0109895467758179 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18254659 chr19:18254654 synonymous SNV . 0 16 hm5C_associated_SNPs_24050 0 0 1 0 1 MAST3 chr19:18254573 3'AG 18254573 Downstream 82bp
chr20 30898675 30898675 1 + C G HNSC 30898670 + 30898650 30898690 41 AATTCCAGGAAGAGATTGCTCGGCTCAAGGCCCAGCTGGAA AATTCCAGGAAGAGATTGCTCGGCTGAAGGCCCAGCTGGAA < 41bp 1 0.743661038422283 1 0.780260443687439 experiment 0.512677923155434 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898670 chr20:30898675 synonymous SNV . 0 26 hm5C_associated_SNPs_24051 0 0 1 0 1 KIF3B chr20:30898703 5'GT 30898703 Upstream 29bp
chr1 22332274 22332274 1 + C T HNSC 22332255 + 22332235 22332275 41 ACTCTGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCG ACTCTGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTTG < 41bp 1 0.247559616179597 1 0.439631134271622 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332255 chr1:22332274 nonsynonymous SNV 0.000 1 40 hm5C_associated_SNPs_24052 0 0 0 0 1 CELA3A chr1:22332289 5'GT 22332289 Upstream 16bp
chr1 22332274 22332274 1 + C T HNSC 22332258 + 22332238 22332278 41 CTGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGT CTGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTTGTGT < 41bp 1 0.229927438721406 1 0.104547560214996 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332258 chr1:22332274 nonsynonymous SNV 0.000 1 37 hm5C_associated_SNPs_24053 0 0 0 0 1 CELA3A chr1:22332289 5'GT 22332289 Upstream 16bp
chr1 22332274 22332274 1 + C T HNSC 22332259 + 22332239 22332279 41 TGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGTG TGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTTGTGTG < 41bp 1 0.284578134062938 1 0.109754055738449 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332259 chr1:22332274 nonsynonymous SNV 0.000 1 36 hm5C_associated_SNPs_24054 0 0 0 0 1 CELA3A chr1:22332289 5'GT 22332289 Upstream 16bp
chr1 22332274 22332274 1 + C T HNSC 22332261 + 22332241 22332281 41 AGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG AGGAGCTGTTTGTGCATCCACTCTGGAACCGCTTGTGTGTG < 41bp 1 0.572934651513576 1 0.230777978897095 experiment 0.854130696972849 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332261 chr1:22332274 nonsynonymous SNV 0.000 1 34 hm5C_associated_SNPs_24055 0 0 0 0 1 CELA3A chr1:22332289 5'GT 22332289 Upstream 16bp
chr1 22332274 22332274 1 + C T HNSC 22332269 + 22332249 22332289 41 TTTGTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGG TTTGTGCATCCACTCTGGAACCGCTTGTGTGTGGCCTGTGG < 41bp 1 0.264929579924489 1 0.0378570854663849 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332269 chr1:22332274 nonsynonymous SNV 0.000 1 26 hm5C_associated_SNPs_24056 0 0 0 0 1 CELA3A chr1:22332289 5'GT 22332289 Upstream 16bp
chr1 22332274 22332274 1 + C T HNSC 22332270 + 22332250 22332290 41 TTGTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGGG TTGTGCATCCACTCTGGAACCGCTTGTGTGTGGCCTGTGGG < 41bp 1 0.439631751908789 1 0.0936989784240723 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332270 chr1:22332274 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_24057 0 0 0 0 1 CELA3A chr1:22332289 5'GT 22332289 Upstream 16bp
chr1 22332274 22332274 1 + C T HNSC 22332272 + 22332252 22332292 41 GTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGGGTG GTGCATCCACTCTGGAACCGCTTGTGTGTGGCCTGTGGGTG < 41bp 1 0.415688463207947 1 0.0735897123813629 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332272 chr1:22332274 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_24058 0 0 0 0 1 CELA3A chr1:22332289 5'GT 22332289 Upstream 16bp
chr1 22332274 22332274 1 + C T HNSC 22332283 + 22332263 22332303 41 CTGGAACCGCTCGTGTGTGGCCTGTGGGTGAGTGAATGCTC CTGGAACCGCTTGTGTGTGGCCTGTGGGTGAGTGAATGCTC < 41bp 1 0.224938549145435 1 0.081229567527771 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332283 chr1:22332274 nonsynonymous SNV 0.000 1 12 hm5C_associated_SNPs_24059 0 0 0 0 1 CELA3A chr1:22332289 5'GT 22332289 Upstream 16bp
chr1 22332274 22332274 1 + C T HNSC 22332284 + 22332264 22332304 41 TGGAACCGCTCGTGTGTGGCCTGTGGGTGAGTGAATGCTCC TGGAACCGCTTGTGTGTGGCCTGTGGGTGAGTGAATGCTCC < 41bp 1 0.53366443874107 1 0.189885288476944 experiment 0.932671122517859 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332284 chr1:22332274 nonsynonymous SNV 0.000 1 11 hm5C_associated_SNPs_24060 0 0 0 0 1 CELA3A chr1:22332289 5'GT 22332289 Upstream 16bp
chr17 70119078 70119078 1 + G A HNSC 70119073 + 70119053 70119093 41 GCCGACTCGCCACACTCCTCCTCCGGCATGAGCGAGGTGCA GCCGACTCGCCACACTCCTCCTCCGACATGAGCGAGGTGCA < 41bp 1 0.547732634839572 1 0.87067848443985 experiment 0.904534730320856 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SOX9 ENSG00000125398 CDS Human protein_coding chr17:70119073 chr17:70119078 nonsynonymous SNV 0.940 3 26 hm5C_associated_SNPs_24061 0 0 1 0 1 SOX9 chr17:70119113 5'GT 70119113 Upstream 36bp
chr14 68191258 68191258 1 + G A HNSC 68191265 + 68191245 68191285 41 GTGGTGATCACTGGCGCCAACACGGGCATTGGCAAGGAGAC GTGGTGATCACTGACGCCAACACGGGCATTGGCAAGGAGAC < 41bp 1 0.762673040000266 1 0.305087774991989 experiment 0.474653919999468 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RDH12 ENSG00000139988 CDS Human protein_coding chr14:68191265 chr14:68191258 nonsynonymous SNV 0.896 5 14 hm5C_associated_SNPs_24062 0 0 0 0 2 RDH12 chr14:68191190 3'AG 68191190 Downstream 69bp
chr14 68191258 68191258 1 + G A HNSC 68191265 + 68191245 68191285 41 GTGGTGATCACTGGCGCCAACACGGGCATTGGCAAGGAGAC GTGGTGATCACTGACGCCAACACGGGCATTGGCAAGGAGAC < 41bp 1 0.762673040000266 1 0.305087774991989 experiment 0.474653919999468 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RDH12 ENSG00000139988 CDS Human protein_coding chr14:68191265 chr14:68191258 nonsynonymous SNV 0.896 5 14 hm5C_associated_SNPs_24062 0 0 0 0 2 RDH12 chr14:68191308 5'GT 68191308 Upstream 51bp
chr2 173429336 173429336 1 + C G HNSC 173429352 + 173429332 173429372 41 CTGTCACCAGCCAGAATGTTCAGTACTTTTTGGATCGATTC CTGTGACCAGCCAGAATGTTCAGTACTTTTTGGATCGATTC < 41bp 1 0.533135222645881 1 0.0444088280200958 experiment 0.933729554708238 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PDK1 ENSG00000152256 CDS Human protein_coding chr2:173429352 chr2:173429336 synonymous SNV . 0 5 hm5C_associated_SNPs_24064 0 0 1 3 1 PDK1 chr2:173429415 5'GT 173429415 Upstream 80bp
chr10 106019428 106019428 1 + G A HNSC 106019431 + 106019411 106019451 41 TTCTGGAAAACAGTCAGGGTCAGCTGATCTACGAGTCTGCC TTCTGGAAAACAGTCAGAGTCAGCTGATCTACGAGTCTGCC < 41bp 1 0.634488015033983 1 0.559540688991547 experiment 0.731023969932034 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GSTO1 ENSG00000148834 CDS Human protein_coding chr10:106019431 chr10:106019428 nonsynonymous SNV 0.993 3 18 hm5C_associated_SNPs_24065 0 0 1 0 1 GSTO1 chr10:106019334 3'AG 106019334 Downstream 95bp
chr19 49404064 49404064 1 + C T HNSC 49404083 + 49404063 49404103 41 TCTGGGCCCCGAGGAACCCTCCTTCTGTTGCCGCTGCTGCT TTTGGGCCCCGAGGAACCCTCCTTCTGTTGCCGCTGCTGCT < 41bp 1 0.0271321537151338 1 0.0491861701011658 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49404083 chr19:49404064 nonsynonymous SNV 0.089 1 2 hm5C_associated_SNPs_24067 0 0 1 0 1 NUCB1 chr19:49404043 3'AG 49404043 Downstream 22bp
chr9 139734271 139734271 1 + C T HNSC 139734259 + 139734239 139734279 41 GCCTTCAGACTGAAGAATGACTCGGACCTCTTCGGGCTGGG GCCTTCAGACTGAAGAATGACTCGGACCTCTTTGGGCTGGG < 41bp 1 0.687759955291417 1 0.455679148435593 experiment 0.624480089417167 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734259 chr9:139734271 synonymous SNV . 0 33 hm5C_associated_SNPs_24068 0 0 1 0 1 RABL6 chr9:139734317 5'GT 139734317 Upstream 47bp
chr9 139734271 139734271 1 + C T HNSC 139734265 + 139734245 139734285 41 AGACTGAAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGA AGACTGAAGAATGACTCGGACCTCTTTGGGCTGGGGCTGGA < 41bp 1 0.0735406320909288 1 0.0870526432991028 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734265 chr9:139734271 synonymous SNV . 0 27 hm5C_associated_SNPs_24069 0 0 1 0 1 RABL6 chr9:139734317 5'GT 139734317 Upstream 47bp
chr9 139734271 139734271 1 + C T HNSC 139734266 + 139734246 139734286 41 GACTGAAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGAG GACTGAAGAATGACTCGGACCTCTTTGGGCTGGGGCTGGAG < 41bp 1 0.139622622172462 1 0.273324310779572 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734266 chr9:139734271 synonymous SNV . 0 26 hm5C_associated_SNPs_24070 0 0 1 0 1 RABL6 chr9:139734317 5'GT 139734317 Upstream 47bp
chr9 139734268 139734268 1 + C T HNSC 139734259 + 139734239 139734279 41 GCCTTCAGACTGAAGAATGACTCGGACCTCTTCGGGCTGGG GCCTTCAGACTGAAGAATGACTCGGACCTTTTCGGGCTGGG < 41bp 1 0.639534101395067 1 0.555086374282837 experiment 0.720931797209866 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734259 chr9:139734268 synonymous SNV . 0 30 hm5C_associated_SNPs_24071 0 0 1 0 1 RABL6 chr9:139734317 5'GT 139734317 Upstream 50bp
chr9 139734268 139734268 1 + C T HNSC 139734265 + 139734245 139734285 41 AGACTGAAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGA AGACTGAAGAATGACTCGGACCTTTTCGGGCTGGGGCTGGA < 41bp 1 0.023782081568199 1 0.0430014133453369 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734265 chr9:139734268 synonymous SNV . 0 24 hm5C_associated_SNPs_24072 0 0 1 0 1 RABL6 chr9:139734317 5'GT 139734317 Upstream 50bp
chr9 139734268 139734268 1 + C T HNSC 139734266 + 139734246 139734286 41 GACTGAAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGAG GACTGAAGAATGACTCGGACCTTTTCGGGCTGGGGCTGGAG < 41bp 1 0.0384479963022147 1 0.0558927953243256 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734266 chr9:139734268 synonymous SNV . 0 23 hm5C_associated_SNPs_24073 0 0 1 0 1 RABL6 chr9:139734317 5'GT 139734317 Upstream 50bp
chr9 139734268 139734268 1 + C T HNSC 139734271 + 139734251 139734291 41 AAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGAGGAGGC AAGAATGACTCGGACCTTTTCGGGCTGGGGCTGGAGGAGGC < 41bp 1 0.771880880832218 1 0.915611803531647 experiment 0.456238238335563 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734271 chr9:139734268 synonymous SNV . 0 18 hm5C_associated_SNPs_24074 0 0 1 0 1 RABL6 chr9:139734317 5'GT 139734317 Upstream 50bp
chr7 135272732 135272732 1 + C G HNSC 135272723 + 135272703 135272743 41 ATCTAGGGGTGGCTCATCAGCGGCCCCCTCAACGCCAGGTG ATCTAGGGGTGGCTCATCAGCGGCCCCCTGAACGCCAGGTG < 41bp 1 0.439279257188651 1 0.599902033805847 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135272723 chr7:135272732 nonsynonymous SNV 0.998 1 30 hm5C_associated_SNPs_24075 0 0 1 0 1 NUP205 chr7:135272740 5'GT 135272740 Upstream 9bp
chr5 142264901 142264901 1 + T C HNSC 142264910 + 142264890 142264930 41 ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTT ACAGAAAAGTACTGTGGCATCTTAGAAAAACACTTGAATTT < 41bp 1 0.132265983733841 1 0.343417346477509 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142264910 chr5:142264901 synonymous SNV . 0 12 hm5C_associated_SNPs_24077 0 0 1 0 2 ARHGAP26 chr5:142264863 3'AG 142264863 Downstream 39bp
chr5 142264901 142264901 1 + T C HNSC 142264910 + 142264890 142264930 41 ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTT ACAGAAAAGTACTGTGGCATCTTAGAAAAACACTTGAATTT < 41bp 1 0.132265983733841 1 0.343417346477509 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142264910 chr5:142264901 synonymous SNV . 0 12 hm5C_associated_SNPs_24077 0 0 1 0 2 ARHGAP26 chr5:142264964 5'GT 142264964 Upstream 64bp
chr10 70525798 70525798 1 + G C HNSC 70525803 + 70525783 70525823 41 TTGAGTGTCCTATTGGACTACAGATTAGAGGATAATAAAGA TTGAGTGTCCTATTGCACTACAGATTAGAGGATAATAAAGA < 41bp 1 0.223664778614338 1 0.400704860687256 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70525803 chr10:70525798 nonsynonymous SNV 0.944 4 16 hm5C_associated_SNPs_24078 0 0 1 0 1 CCAR1 chr10:70525836 5'GT 70525836 Upstream 39bp
chr11 73074856 73074856 1 + G A HNSC 73074840 + 73074820 73074860 41 ATCCGTGACCGCAGGAACAGCATGAAGCTCCAGCATGCGGC ATCCGTGACCGCAGGAACAGCATGAAGCTCCAGCATACGGC < 41bp 1 0.369421468692335 1 0.201722294092178 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73074840 chr11:73074856 nonsynonymous SNV 0.971 1 37 hm5C_associated_SNPs_24079 0 0 1 0 1 ARHGEF17 chr11:73074878 5'GT 73074878 Upstream 23bp
chr16 29994473 29994473 1 + C T HNSC 29994488 + 29994468 29994508 41 ATCAGCGCCTCCAGCCAGAGCAGCTCCGTCAACAGCCTAGC ATCAGTGCCTCCAGCCAGAGCAGCTCCGTCAACAGCCTAGC < 41bp 1 0.325637886492956 1 0.281599819660187 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994488 chr16:29994473 synonymous SNV . 0 6 hm5C_associated_SNPs_24080 0 0 1 0 1 TAOK2 chr16:29994393 3'AG 29994393 Downstream 81bp
chr16 29994473 29994473 1 + C T HNSC 29994493 + 29994473 29994513 41 CGCCTCCAGCCAGAGCAGCTCCGTCAACAGCCTAGCAGATG TGCCTCCAGCCAGAGCAGCTCCGTCAACAGCCTAGCAGATG < 41bp 1 0.0709512575008634 1 0.131417721509933 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994493 chr16:29994473 synonymous SNV . 0 1 hm5C_associated_SNPs_24081 0 0 1 0 1 TAOK2 chr16:29994393 3'AG 29994393 Downstream 81bp
chr5 179143227 179143227 1 + C T HNSC 179143220 + 179143200 179143240 41 TTCACGTGAAATTGAGGACCCAGAAGACCGGAAGCCCGAGG TTCACGTGAAATTGAGGACCCAGAAGATCGGAAGCCCGAGG < 41bp 1 0.788306958685166 1 0.704348027706146 experiment 0.423386082629668 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179143220 chr5:179143227 synonymous SNV . 0 28 hm5C_associated_SNPs_24082 0 0 1 0 1 CANX chr5:179143295 5'GT 179143295 Upstream 69bp
chr10 79797023 79797023 1 + C T HNSC 79797031 + 79797011 79797051 41 AATGAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGTG AATGAAGAAAGTTAGGGGGACTGCAAAGGCCAATGTTGGTG < 41bp 1 0.675365310120216 1 0.329119652509689 experiment 0.649269379759569 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797031 chr10:79797023 synonymous SNV . 0 13 hm5C_associated_SNPs_24083 0 0 1 0 2 RPS24 chr10:79796952 3'AG 79796952 Downstream 72bp
chr10 79797023 79797023 1 + C T HNSC 79797031 + 79797011 79797051 41 AATGAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGTG AATGAAGAAAGTTAGGGGGACTGCAAAGGCCAATGTTGGTG < 41bp 1 0.675365310120216 1 0.329119652509689 experiment 0.649269379759569 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797031 chr10:79797023 synonymous SNV . 0 13 hm5C_associated_SNPs_24083 0 0 1 0 2 RPS24 chr10:79797062 5'GT 79797062 Upstream 40bp
chr10 79797023 79797023 1 + C T HNSC 79797034 + 79797014 79797054 41 GAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTG GAAGAAAGTTAGGGGGACTGCAAAGGCCAATGTTGGTGCTG < 41bp 1 0.626028529633522 1 0.689060747623444 experiment 0.747942940732956 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797034 chr10:79797023 synonymous SNV . 0 10 hm5C_associated_SNPs_24084 0 0 1 0 2 RPS24 chr10:79796952 3'AG 79796952 Downstream 72bp
chr10 79797023 79797023 1 + C T HNSC 79797034 + 79797014 79797054 41 GAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTG GAAGAAAGTTAGGGGGACTGCAAAGGCCAATGTTGGTGCTG < 41bp 1 0.626028529633522 1 0.689060747623444 experiment 0.747942940732956 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797034 chr10:79797023 synonymous SNV . 0 10 hm5C_associated_SNPs_24084 0 0 1 0 2 RPS24 chr10:79797062 5'GT 79797062 Upstream 40bp
chr10 79797023 79797023 1 + C T HNSC 79797041 + 79797021 79797061 41 GTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTGGCAAAAA GTTAGGGGGACTGCAAAGGCCAATGTTGGTGCTGGCAAAAA < 41bp 1 0.410838710720397 1 0.12755760550499 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797041 chr10:79797023 synonymous SNV . 0 3 hm5C_associated_SNPs_24085 0 0 1 0 2 RPS24 chr10:79796952 3'AG 79796952 Downstream 72bp
chr10 79797023 79797023 1 + C T HNSC 79797041 + 79797021 79797061 41 GTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTGGCAAAAA GTTAGGGGGACTGCAAAGGCCAATGTTGGTGCTGGCAAAAA < 41bp 1 0.410838710720397 1 0.12755760550499 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797041 chr10:79797023 synonymous SNV . 0 3 hm5C_associated_SNPs_24085 0 0 1 0 2 RPS24 chr10:79797062 5'GT 79797062 Upstream 40bp
chr5 102472491 102472491 1 + C T HNSC 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATTAATGACTTGAATATGCAGTATCTCATACAAGATAGG < 41bp 1 0.374908127115578 1 0.180243670940399 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472491 synonymous SNV . 0 5 hm5C_associated_SNPs_24087 0 0 1 2 2 PPIP5K2 chr5:102472436 3'AG 102472436 Downstream 56bp
chr5 102472491 102472491 1 + C T HNSC 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATTAATGACTTGAATATGCAGTATCTCATACAAGATAGG < 41bp 1 0.374908127115578 1 0.180243670940399 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472491 synonymous SNV . 0 5 hm5C_associated_SNPs_24087 0 0 1 2 2 PPIP5K2 chr5:102472526 5'GT 102472526 Upstream 36bp
chr14 102455173 102455173 1 + G C HNSC 102455186 + 102455166 102455206 41 CCTGGTGGAGAGCCAAAGATCAAAGTGAGTGCTTCTGTGGC CCTGGTGCAGAGCCAAAGATCAAAGTGAGTGCTTCTGTGGC < 41bp 1 0.171188131088139 1 0.526167213916779 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102455186 chr14:102455173 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_24088 0 0 1 0 1 DYNC1H1 chr14:102455189 5'GT 102455189 Upstream 17bp
chr17 38450695 38450695 1 + G C HNSC 38450687 + 38450667 38450707 41 CTAGAGAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCT CTAGAGAAAAATGTAAGCCACAGCTGTTCAACTTCCCACCT < 41bp 1 0.533803635567738 1 0.12940588593483 experiment 0.932392728864523 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDC6 ENSG00000094804 CDS Human protein_coding chr17:38450687 chr17:38450695 nonsynonymous SNV 0.992 3 29 hm5C_associated_SNPs_24090 0 0 1 0 2 CDC6 chr17:38450616 3'AG 38450616 Downstream 80bp
chr17 38450695 38450695 1 + G C HNSC 38450687 + 38450667 38450707 41 CTAGAGAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCT CTAGAGAAAAATGTAAGCCACAGCTGTTCAACTTCCCACCT < 41bp 1 0.533803635567738 1 0.12940588593483 experiment 0.932392728864523 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDC6 ENSG00000094804 CDS Human protein_coding chr17:38450687 chr17:38450695 nonsynonymous SNV 0.992 3 29 hm5C_associated_SNPs_24090 0 0 1 0 2 CDC6 chr17:38450755 5'GT 38450755 Upstream 61bp
chr9 140622883 140622883 1 + C G HNSC 140622869 + 140622849 140622889 41 AAGGAACCAAAAGAGGAGATCAACAAAAACATTTCTGACTT AAGGAACCAAAAGAGGAGATCAACAAAAACATTTGTGACTT < 41bp 1 0.458198566220075 1 0.599293172359467 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EHMT1 ENSG00000181090 CDS Human protein_coding chr9:140622869 chr9:140622883 nonsynonymous SNV 0.372 2 35 hm5C_associated_SNPs_24091 0 0 1 0 2 EHMT1 chr9:140622801 3'AG 140622801 Downstream 83bp
chr9 140622883 140622883 1 + C G HNSC 140622869 + 140622849 140622889 41 AAGGAACCAAAAGAGGAGATCAACAAAAACATTTCTGACTT AAGGAACCAAAAGAGGAGATCAACAAAAACATTTGTGACTT < 41bp 1 0.458198566220075 1 0.599293172359467 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EHMT1 ENSG00000181090 CDS Human protein_coding chr9:140622869 chr9:140622883 nonsynonymous SNV 0.372 2 35 hm5C_associated_SNPs_24091 0 0 1 0 2 EHMT1 chr9:140622981 5'GT 140622981 Upstream 99bp
chr8 37978466 37978466 1 + G T HNSC 37978454 + 37978434 37978474 41 TTTTTCCTTTCTGCAGTGACCCTTTGTTTTCTGCTCAGCGC TTTTTCCTTTCTGCAGTGACCCTTTGTTTTCTTCTCAGCGC < 41bp 1 0.0577898812060734 1 0.073207825422287 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ASH2L ENSG00000129691 CDS Human protein_coding chr8:37978454 chr8:37978466 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_24094 0 0 1 0 1 ASH2L chr8:37978450 3'AG 37978450 Downstream 17bp
chr8 143816795 143816795 1 + G C HNSC 143816777 + 143816757 143816797 41 AGCTGCCCGCTGATCTGCAGCACTGGATCTCCTACAACGAG AGCTGCCCGCTGATCTGCAGCACTGGATCTCCTACAACCAG < 41bp 1 0.293676525778917 1 0.210601538419724 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THEM6 ENSG00000130193 CDS Human protein_coding chr8:143816777 chr8:143816795 nonsynonymous SNV 0.762 1 39 hm5C_associated_SNPs_24095 0 0 1 0 1 THEM6 chr8:143816744 3'AG 143816744 Downstream 52bp
chr5 132427045 132427045 1 + T C HNSC 132427041 + 132427021 132427061 41 AAATGAGGAGCCAATGGAAACAGATCAGAATGCAAAGGAGG AAATGAGGAGCCAATGGAAACAGACCAGAATGCAAAGGAGG < 41bp 1 0.235546567869352 1 0.51951402425766 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132427041 chr5:132427045 synonymous SNV . 0 25 hm5C_associated_SNPs_24096 0 0 1 0 1 HSPA4 chr5:132427066 5'GT 132427066 Upstream 22bp
chr5 132427045 132427045 1 + T C HNSC 132427046 + 132427026 132427066 41 AGGAGCCAATGGAAACAGATCAGAATGCAAAGGAGGAAGAG AGGAGCCAATGGAAACAGACCAGAATGCAAAGGAGGAAGAG < 41bp 1 0.669336830934926 1 0.28708815574646 experiment 0.661326338130148 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132427046 chr5:132427045 synonymous SNV . 0 20 hm5C_associated_SNPs_24097 0 0 1 0 1 HSPA4 chr5:132427066 5'GT 132427066 Upstream 22bp
chr5 132427045 132427045 1 + T C HNSC 132427053 + 132427033 132427073 41 AATGGAAACAGATCAGAATGCAAAGGAGGAAGAGGTAATCT AATGGAAACAGACCAGAATGCAAAGGAGGAAGAGGTAATCT < 41bp 1 0.567740383945601 1 0.270610302686691 experiment 0.864519232108798 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132427053 chr5:132427045 synonymous SNV . 0 13 hm5C_associated_SNPs_24098 0 0 1 0 1 HSPA4 chr5:132427066 5'GT 132427066 Upstream 22bp
chr10 6265929 6265929 1 + C T HNSC 6265930 + 6265910 6265950 41 TTCAATTTCAGAGGAGATGCCCTACCTGAAATGCCCTCTTC TTCAATTTCAGAGGAGATGTCCTACCTGAAATGCCCTCTTC < 41bp 1 0.0514302819302265 1 0.0706007480621338 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6265930 chr10:6265929 nonsynonymous SNV 0.995 4 20 hm5C_associated_SNPs_24099 0 0 1 0 2 PFKFB3 chr10:6265921 3'AG 6265921 Downstream 9bp
chr10 6265929 6265929 1 + C T HNSC 6265930 + 6265910 6265950 41 TTCAATTTCAGAGGAGATGCCCTACCTGAAATGCCCTCTTC TTCAATTTCAGAGGAGATGTCCTACCTGAAATGCCCTCTTC < 41bp 1 0.0514302819302265 1 0.0706007480621338 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6265930 chr10:6265929 nonsynonymous SNV 0.995 4 20 hm5C_associated_SNPs_24099 0 0 1 0 2 PFKFB3 chr10:6265983 5'GT 6265983 Upstream 55bp
chr7 142458443 142458443 1 + G T HNSC 142458431 + 142458411 142458451 41 GCCCCCTTTGATGATGATGACAAGATCGTTGGGGGCTACAA GCCCCCTTTGATGATGATGACAAGATCGTTGGTGGCTACAA < 41bp 1 0.719704472119867 1 0.54635101556778 experiment 0.560591055760266 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458431 chr7:142458443 synonymous SNV . 0 33 hm5C_associated_SNPs_24100 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 38bp
chr7 142458443 142458443 1 + G T HNSC 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATGACAAGATCGTTGGTGGCTACAACTGTGA < 41bp 1 0.240132078585499 1 0.0865887999534607 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458443 synonymous SNV . 0 27 hm5C_associated_SNPs_24101 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 38bp
chr7 142458443 142458443 1 + G T HNSC 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGTTGGTGGCTACAACTGTGAGGAGAATTC < 41bp 1 0.434488752195442 1 0.559301793575287 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458443 synonymous SNV . 0 18 hm5C_associated_SNPs_24102 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 38bp
chr7 142458443 142458443 1 + G T HNSC 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGTTGGTGGCTACAACTGTGAGGAGAATTCTGT < 41bp 1 0.175047912329768 1 0.14261069893837 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458443 synonymous SNV . 0 15 hm5C_associated_SNPs_24103 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 38bp
chr7 142458443 142458443 1 + G T HNSC 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGTGGCTACAACTGTGAGGAGAATTCTGTCCC < 41bp 1 0.347841406882195 1 0.378567934036255 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458443 synonymous SNV . 0 12 hm5C_associated_SNPs_24104 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 38bp
chr19 19638864 19638864 1 + G T HNSC 19638852 + 19638832 19638872 41 TCCACACAACCCGCTGGGTGCCCCCCTTGATCGGGGAGCTG TCCACACAACCCGCTGGGTGCCCCCCTTGATCTGGGAGCTG < 41bp 1 0.1476775072338 1 0.0333397090435028 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19638852 chr19:19638864 nonsynonymous SNV 0.000 3 33 hm5C_associated_SNPs_24105 0 0 1 0 2 NDUFA13 chr19:19638816 3'AG 19638816 Downstream 49bp
chr19 19638864 19638864 1 + G T HNSC 19638852 + 19638832 19638872 41 TCCACACAACCCGCTGGGTGCCCCCCTTGATCGGGGAGCTG TCCACACAACCCGCTGGGTGCCCCCCTTGATCTGGGAGCTG < 41bp 1 0.1476775072338 1 0.0333397090435028 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19638852 chr19:19638864 nonsynonymous SNV 0.000 3 33 hm5C_associated_SNPs_24105 0 0 1 0 2 NDUFA13 chr19:19638925 5'GT 19638925 Upstream 62bp
chr2 201499611 201499611 1 + G A HNSC 201499618 + 201499598 201499638 41 TGGATGTCTACGTGTCCACACAGTTTCCCAAATATATACAG TGGATGTCTACGTATCCACACAGTTTCCCAAATATATACAG < 41bp 1 0.182161501189646 1 0.0618733763694763 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AOX1 ENSG00000138356 CDS Human protein_coding chr2:201499618 chr2:201499611 synonymous SNV . 0 14 hm5C_associated_SNPs_24106 0 0 0 0 2 AOX1 chr2:201499514 3'AG 201499514 Downstream 98bp
chr2 201499611 201499611 1 + G A HNSC 201499618 + 201499598 201499638 41 TGGATGTCTACGTGTCCACACAGTTTCCCAAATATATACAG TGGATGTCTACGTATCCACACAGTTTCCCAAATATATACAG < 41bp 1 0.182161501189646 1 0.0618733763694763 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AOX1 ENSG00000138356 CDS Human protein_coding chr2:201499618 chr2:201499611 synonymous SNV . 0 14 hm5C_associated_SNPs_24106 0 0 0 0 2 AOX1 chr2:201499638 5'GT 201499638 Upstream 28bp
chr1 43911887 43911887 1 + G A HNSC 43911903 + 43911883 43911923 41 CAGCGGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGC CAGCAGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGC < 41bp 1 0.1019077084259 1 0.115006387233734 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911903 chr1:43911887 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_24107 0 0 0 0 2 SZT2 chr1:43911850 3'AG 43911850 Downstream 38bp
chr1 43911887 43911887 1 + G A HNSC 43911903 + 43911883 43911923 41 CAGCGGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGC CAGCAGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGC < 41bp 1 0.1019077084259 1 0.115006387233734 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911903 chr1:43911887 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_24107 0 0 0 0 2 SZT2 chr1:43911930 5'GT 43911930 Upstream 44bp
chr1 43911887 43911887 1 + G A HNSC 43911906 + 43911886 43911926 41 CGGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGCATT CAGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGCATT < 41bp 1 0.0440696893351947 1 0.0844070613384247 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911906 chr1:43911887 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_24108 0 0 0 0 2 SZT2 chr1:43911850 3'AG 43911850 Downstream 38bp
chr1 43911887 43911887 1 + G A HNSC 43911906 + 43911886 43911926 41 CGGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGCATT CAGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGCATT < 41bp 1 0.0440696893351947 1 0.0844070613384247 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911906 chr1:43911887 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_24108 0 0 0 0 2 SZT2 chr1:43911930 5'GT 43911930 Upstream 44bp
chr2 189852852 189852852 1 + G T HNSC 189852859 + 189852839 189852879 41 ATCTGGTCATCCTGGTTCCCCTGTAAGTATAGCCATTGGTG ATCTGGTCATCCTTGTTCCCCTGTAAGTATAGCCATTGGTG < 41bp 1 0.301439399257169 1 0.14835113286972 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189852859 chr2:189852852 nonsynonymous SNV 0.992 5 14 hm5C_associated_SNPs_24109 0 0 0 0 2 COL3A1 chr2:189852807 3'AG 189852807 Downstream 46bp
chr2 189852852 189852852 1 + G T HNSC 189852859 + 189852839 189852879 41 ATCTGGTCATCCTGGTTCCCCTGTAAGTATAGCCATTGGTG ATCTGGTCATCCTTGTTCCCCTGTAAGTATAGCCATTGGTG < 41bp 1 0.301439399257169 1 0.14835113286972 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189852859 chr2:189852852 nonsynonymous SNV 0.992 5 14 hm5C_associated_SNPs_24109 0 0 0 0 2 COL3A1 chr2:189852860 5'GT 189852860 Upstream 9bp
chr22 51143509 51143509 1 + G T HNSC 51143513 + 51143493 51143533 41 GAAGCCAGAAGAGGACGGGGCTCGGCGCAGAGGTGAGGGGT GAAGCCAGAAGAGGACTGGGCTCGGCGCAGAGGTGAGGGGT < 41bp 1 0.373366256390312 1 0.646991193294525 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51143513 chr22:51143509 nonsynonymous SNV . 0 17 hm5C_associated_SNPs_24110 0 0 1 0 1 SHANK3 chr22:51143524 5'GT 51143524 Upstream 16bp
chr7 101837129 101837129 1 + A T HNSC 101837147 + 101837127 101837167 41 TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA TGTAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA < 41bp 1 0.0235395802024589 1 0.420168817043304 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837147 chr7:101837129 stopgain 0.999 1 3 hm5C_associated_SNPs_24113 0 0 1 0 2 CUX1 chr7:101837122 3'AG 101837122 Downstream 8bp
chr7 101837129 101837129 1 + A T HNSC 101837147 + 101837127 101837167 41 TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA TGTAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA < 41bp 1 0.0235395802024589 1 0.420168817043304 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837147 chr7:101837129 stopgain 0.999 1 3 hm5C_associated_SNPs_24113 0 0 1 0 2 CUX1 chr7:101837170 5'GT 101837170 Upstream 42bp
chr7 101837129 101837129 1 + A T HNSC 101837148 + 101837128 101837168 41 GAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC GTAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC < 41bp 1 0.088739750689234 1 0.396250307559967 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837148 chr7:101837129 stopgain 0.999 1 2 hm5C_associated_SNPs_24114 0 0 1 0 2 CUX1 chr7:101837122 3'AG 101837122 Downstream 8bp
chr7 101837129 101837129 1 + A T HNSC 101837148 + 101837128 101837168 41 GAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC GTAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC < 41bp 1 0.088739750689234 1 0.396250307559967 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837148 chr7:101837129 stopgain 0.999 1 2 hm5C_associated_SNPs_24114 0 0 1 0 2 CUX1 chr7:101837170 5'GT 101837170 Upstream 42bp
chr12 124221737 124221737 1 + G T HNSC 124221725 + 124221705 124221745 41 TATCACATGCTGAACATGTGCAGCTTTGACGTGACCAACAA TATCACATGCTGAACATGTGCAGCTTTGACGTTACCAACAA < 41bp 1 0.707516349642441 1 0.133404105901718 experiment 0.584967300715117 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124221725 chr12:124221737 synonymous SNV . 0 33 hm5C_associated_SNPs_24116 0 0 1 0 1 ATP6V0A2 chr12:124221818 5'GT 124221818 Upstream 82bp
chr14 24546877 24546877 1 + G A HNSC 24546874 + 24546854 24546894 41 TGGTGGAGTACTACGCCAGCCAGGGCATCAGCCCTGGGGCT TGGTGGAGTACTACGCCAGCCAGAGCATCAGCCCTGGGGCT < 41bp 1 0.625458993560126 1 0.746725857257843 experiment 0.749082012879747 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CPNE6 ENSG00000100884 CDS Human protein_coding chr14:24546874 chr14:24546877 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_24117 0 0 0 0 2 CPNE6 chr14:24546802 3'AG 24546802 Downstream 76bp
chr14 24546877 24546877 1 + G A HNSC 24546874 + 24546854 24546894 41 TGGTGGAGTACTACGCCAGCCAGGGCATCAGCCCTGGGGCT TGGTGGAGTACTACGCCAGCCAGAGCATCAGCCCTGGGGCT < 41bp 1 0.625458993560126 1 0.746725857257843 experiment 0.749082012879747 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CPNE6 ENSG00000100884 CDS Human protein_coding chr14:24546874 chr14:24546877 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_24117 0 0 0 0 2 CPNE6 chr14:24546976 5'GT 24546976 Upstream 100bp
chr5 140084081 140084081 1 + G A HNSC 140084084 + 140084064 140084104 41 GTGAAGAAACGTTTTGAGGTCAACAAGAAGAAGATGGAAGA GTGAAGAAACGTTTTGAAGTCAACAAGAAGAAGATGGAAGA < 41bp 1 0.767865900302373 1 0.516069293022156 experiment 0.464268199395254 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084084 chr5:140084081 synonymous SNV . 0 18 hm5C_associated_SNPs_24120 0 0 1 0 2 ZMAT2 chr5:140084011 3'AG 140084011 Downstream 71bp
chr5 140084081 140084081 1 + G A HNSC 140084084 + 140084064 140084104 41 GTGAAGAAACGTTTTGAGGTCAACAAGAAGAAGATGGAAGA GTGAAGAAACGTTTTGAAGTCAACAAGAAGAAGATGGAAGA < 41bp 1 0.767865900302373 1 0.516069293022156 experiment 0.464268199395254 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084084 chr5:140084081 synonymous SNV . 0 18 hm5C_associated_SNPs_24120 0 0 1 0 2 ZMAT2 chr5:140084156 5'GT 140084156 Upstream 76bp
chr11 61503242 61503242 1 + A T HNSC 61503225 + 61503205 61503245 41 CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTGAGCG CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTGTGCG < 41bp 1 0.238778457177013 1 0.0560286939144135 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503225 chr11:61503242 nonsynonymous SNV 0.998 4 38 hm5C_associated_SNPs_24121 0 0 1 0 2 DAGLA chr11:61503211 3'AG 61503211 Downstream 32bp
chr11 61503242 61503242 1 + A T HNSC 61503225 + 61503205 61503245 41 CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTGAGCG CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTGTGCG < 41bp 1 0.238778457177013 1 0.0560286939144135 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503225 chr11:61503242 nonsynonymous SNV 0.998 4 38 hm5C_associated_SNPs_24121 0 0 1 0 2 DAGLA chr11:61503288 5'GT 61503288 Upstream 47bp
chr20 37144953 37144953 1 + C T HNSC 37144939 + 37144919 37144959 41 GCAAGAATTGAATCAGTATCCCTGCCTTAAACATCTGCCTC GCAAGAATTGAATCAGTATCCCTGCCTTAAACATTTGCCTC < 41bp 1 0.128202779232931 1 0.21642878651619 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37144939 chr20:37144953 synonymous SNV . 0 35 hm5C_associated_SNPs_24122 0 0 1 0 1 RALGAPB chr20:37145013 5'GT 37145013 Upstream 61bp
chr19 34859497 34859497 1 + G T HNSC 34859485 + 34859465 34859505 41 TATATCCTGACCGTAATCCCCAGGGTCGAGCCGTGCTGCAC TATATCCTGACCGTAATCCCCAGGGTCGAGCCTTGCTGCAC < 41bp 1 0.734954914474362 1 0.928230106830597 experiment 0.530090171051276 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34859485 chr19:34859497 nonsynonymous SNV 0.600 5 33 hm5C_associated_SNPs_24123 0 0 1 0 1 GPI chr19:34859488 3'AG 34859488 Downstream 10bp
chr3 5215724 5215724 1 + G C HNSC 5215729 + 5215709 5215749 41 TGCTTGGAAACAAGAGAGATCTTCCTAATGCCTTGGATGAG TGCTTGGAAACAAGACAGATCTTCCTAATGCCTTGGATGAG < 41bp 1 0.0922037090342654 1 0.130713164806366 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARL8B ENSG00000134108 CDS Human protein_coding chr3:5215729 chr3:5215724 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_24124 0 0 1 0 2 ARL8B chr3:5215702 3'AG 5215702 Downstream 23bp
chr3 5215724 5215724 1 + G C HNSC 5215729 + 5215709 5215749 41 TGCTTGGAAACAAGAGAGATCTTCCTAATGCCTTGGATGAG TGCTTGGAAACAAGACAGATCTTCCTAATGCCTTGGATGAG < 41bp 1 0.0922037090342654 1 0.130713164806366 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARL8B ENSG00000134108 CDS Human protein_coding chr3:5215729 chr3:5215724 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_24124 0 0 1 0 2 ARL8B chr3:5215769 5'GT 5215769 Upstream 46bp
chr9 137328333 137328333 1 + G A HNSC 137328316 + 137328296 137328336 41 AGACCTGTTCCCTGCAGGTTCGCTAAGCTCTTGCTCCGCCT AGACCTGTTCCCTGCAGGTTCGCTAAGCTCTTGCTCCACCT < 41bp 1 0.378904086208725 1 0.139027386903763 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RXRA ENSG00000186350 CDS Human protein_coding chr9:137328316 chr9:137328333 nonsynonymous SNV 0.926 5 38 hm5C_associated_SNPs_24126 0 0 1 0 1 RXRA chr9:137328313 3'AG 137328313 Downstream 21bp
chr1 41228713 41228713 1 + A T HNSC 41228706 + 41228686 41228726 41 ATCACTAACACAGGAGAGATCCAGCAGATCCCGGTGAGTCC ATCACTAACACAGGAGAGATCCAGCAGTTCCCGGTGAGTCC < 41bp 1 0.298879195164519 1 0.13390326499939 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFYC ENSG00000066136 CDS Human protein_coding chr1:41228706 chr1:41228713 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_24127 0 0 1 0 2 NFYC chr1:41228662 3'AG 41228662 Downstream 52bp
chr1 41228713 41228713 1 + A T HNSC 41228706 + 41228686 41228726 41 ATCACTAACACAGGAGAGATCCAGCAGATCCCGGTGAGTCC ATCACTAACACAGGAGAGATCCAGCAGTTCCCGGTGAGTCC < 41bp 1 0.298879195164519 1 0.13390326499939 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFYC ENSG00000066136 CDS Human protein_coding chr1:41228706 chr1:41228713 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_24127 0 0 1 0 2 NFYC chr1:41228718 5'GT 41228718 Upstream 6bp
chr7 142458445 142458445 1 + G A HNSC 142458431 + 142458411 142458451 41 GCCCCCTTTGATGATGATGACAAGATCGTTGGGGGCTACAA GCCCCCTTTGATGATGATGACAAGATCGTTGGGGACTACAA < 41bp 1 0.67392282913901 1 0.36146667599678 experiment 0.65215434172198 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458431 chr7:142458445 nonsynonymous SNV 0.050 5 35 hm5C_associated_SNPs_24128 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 40bp
chr7 142458445 142458445 1 + G A HNSC 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATGACAAGATCGTTGGGGACTACAACTGTGA < 41bp 1 0.196153615743697 1 0.116726905107498 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458445 nonsynonymous SNV 0.050 5 29 hm5C_associated_SNPs_24129 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 40bp
chr7 142458445 142458445 1 + G A HNSC 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGTTGGGGACTACAACTGTGAGGAGAATTC < 41bp 1 0.365952261021131 1 0.329907894134521 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458445 nonsynonymous SNV 0.050 5 20 hm5C_associated_SNPs_24130 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 40bp
chr7 142458445 142458445 1 + G A HNSC 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGTTGGGGACTACAACTGTGAGGAGAATTCTGT < 41bp 1 0.205499511608774 1 0.158102303743362 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458445 nonsynonymous SNV 0.050 5 17 hm5C_associated_SNPs_24131 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 40bp
chr7 142458445 142458445 1 + G A HNSC 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGACTACAACTGTGAGGAGAATTCTGTCCC < 41bp 1 0.353248064412058 1 0.213420689105988 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458445 nonsynonymous SNV 0.050 5 14 hm5C_associated_SNPs_24132 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 40bp
chr19 47491269 47491269 1 + C T HNSC 47491265 + 47491245 47491285 41 GGACTGAGCACGGAAGGCATCTACCGGGTCAGCGGGAACAA GGACTGAGCACGGAAGGCATCTACTGGGTCAGCGGGAACAA < 41bp 1 0.436634348605364 1 0.305013000965118 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491265 chr19:47491269 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_24135 0 0 1 0 2 ARHGAP35 chr19:47491246 3'AG 47491246 Downstream 24bp
chr19 47491269 47491269 1 + C T HNSC 47491265 + 47491245 47491285 41 GGACTGAGCACGGAAGGCATCTACCGGGTCAGCGGGAACAA GGACTGAGCACGGAAGGCATCTACTGGGTCAGCGGGAACAA < 41bp 1 0.436634348605364 1 0.305013000965118 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491265 chr19:47491269 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_24135 0 0 1 0 2 ARHGAP35 chr19:47491323 5'GT 47491323 Upstream 55bp
chr19 47491269 47491269 1 + C T HNSC 47491268 + 47491248 47491288 41 CTGAGCACGGAAGGCATCTACCGGGTCAGCGGGAACAAGTC CTGAGCACGGAAGGCATCTACTGGGTCAGCGGGAACAAGTC < 41bp 1 0.747095988309233 1 0.56469589471817 experiment 0.505808023381533 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491268 chr19:47491269 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_24136 0 0 1 0 2 ARHGAP35 chr19:47491246 3'AG 47491246 Downstream 24bp
chr19 47491269 47491269 1 + C T HNSC 47491268 + 47491248 47491288 41 CTGAGCACGGAAGGCATCTACCGGGTCAGCGGGAACAAGTC CTGAGCACGGAAGGCATCTACTGGGTCAGCGGGAACAAGTC < 41bp 1 0.747095988309233 1 0.56469589471817 experiment 0.505808023381533 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491268 chr19:47491269 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_24136 0 0 1 0 2 ARHGAP35 chr19:47491323 5'GT 47491323 Upstream 55bp
chr19 47491269 47491269 1 + C T HNSC 47491274 + 47491254 47491294 41 ACGGAAGGCATCTACCGGGTCAGCGGGAACAAGTCTGAGAT ACGGAAGGCATCTACTGGGTCAGCGGGAACAAGTCTGAGAT < 41bp 1 0.589623307780199 1 0.749020218849182 experiment 0.820753384439602 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491274 chr19:47491269 nonsynonymous SNV 0.994 4 16 hm5C_associated_SNPs_24137 0 0 1 0 2 ARHGAP35 chr19:47491246 3'AG 47491246 Downstream 24bp
chr19 47491269 47491269 1 + C T HNSC 47491274 + 47491254 47491294 41 ACGGAAGGCATCTACCGGGTCAGCGGGAACAAGTCTGAGAT ACGGAAGGCATCTACTGGGTCAGCGGGAACAAGTCTGAGAT < 41bp 1 0.589623307780199 1 0.749020218849182 experiment 0.820753384439602 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491274 chr19:47491269 nonsynonymous SNV 0.994 4 16 hm5C_associated_SNPs_24137 0 0 1 0 2 ARHGAP35 chr19:47491323 5'GT 47491323 Upstream 55bp
chr19 47491269 47491269 1 + C T HNSC 47491283 + 47491263 47491303 41 ATCTACCGGGTCAGCGGGAACAAGTCTGAGATGGAGAGTCT ATCTACTGGGTCAGCGGGAACAAGTCTGAGATGGAGAGTCT < 41bp 1 0.341536179112816 1 0.249667048454285 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491283 chr19:47491269 nonsynonymous SNV 0.994 4 7 hm5C_associated_SNPs_24138 0 0 1 0 2 ARHGAP35 chr19:47491246 3'AG 47491246 Downstream 24bp
chr19 47491269 47491269 1 + C T HNSC 47491283 + 47491263 47491303 41 ATCTACCGGGTCAGCGGGAACAAGTCTGAGATGGAGAGTCT ATCTACTGGGTCAGCGGGAACAAGTCTGAGATGGAGAGTCT < 41bp 1 0.341536179112816 1 0.249667048454285 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491283 chr19:47491269 nonsynonymous SNV 0.994 4 7 hm5C_associated_SNPs_24138 0 0 1 0 2 ARHGAP35 chr19:47491323 5'GT 47491323 Upstream 55bp
chr22 32881150 32881150 1 + C T HNSC 32881149 + 32881129 32881169 41 TCCTCTCTGCGAGGGCAGCTCCGCTACTCTCACCTGTGTGC TCCTCTCTGCGAGGGCAGCTCTGCTACTCTCACCTGTGTGC < 41bp 1 0.718440394758189 1 0.157951980829239 experiment 0.563119210483623 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32881149 chr22:32881150 synonymous SNV . 0 22 hm5C_associated_SNPs_24139 0 0 1 0 2 FBXO7 chr22:32881055 3'AG 32881055 Downstream 96bp
chr22 32881150 32881150 1 + C T HNSC 32881149 + 32881129 32881169 41 TCCTCTCTGCGAGGGCAGCTCCGCTACTCTCACCTGTGTGC TCCTCTCTGCGAGGGCAGCTCTGCTACTCTCACCTGTGTGC < 41bp 1 0.718440394758189 1 0.157951980829239 experiment 0.563119210483623 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32881149 chr22:32881150 synonymous SNV . 0 22 hm5C_associated_SNPs_24139 0 0 1 0 2 FBXO7 chr22:32881196 5'GT 32881196 Upstream 47bp
chr10 51581333 51581333 1 + T C HNSC 51581313 + 51581293 51581333 41 CTGAAGATTCAACTGTCCTGCTCTTTGAAGCTGACACAATT CTGAAGATTCAACTGTCCTGCTCTTTGAAGCTGACACAATC < 41bp 1 0.199666517448734 1 0.0465018749237061 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCOA4 ENSG00000138293 CDS Human other chr10:51581313 chr10:51581333 synonymous SNV . 0 41 hm5C_associated_SNPs_24140 0 0 1 0 2 NCOA4 chr10:51581270 3'AG 51581270 Downstream 64bp
chr10 51581333 51581333 1 + T C HNSC 51581313 + 51581293 51581333 41 CTGAAGATTCAACTGTCCTGCTCTTTGAAGCTGACACAATT CTGAAGATTCAACTGTCCTGCTCTTTGAAGCTGACACAATC < 41bp 1 0.199666517448734 1 0.0465018749237061 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCOA4 ENSG00000138293 CDS Human other chr10:51581313 chr10:51581333 synonymous SNV . 0 41 hm5C_associated_SNPs_24140 0 0 1 0 2 NCOA4 chr10:51581378 5'GT 51581378 Upstream 46bp
chr2 197583259 197583259 1 + G T HNSC 197583260 + 197583240 197583280 41 TTGAAAGAAGTAAAGAGGAGCTGTCCCGAACAGTGAAGTGT TTGAAAGAAGTAAAGAGGATCTGTCCCGAACAGTGAAGTGT < 41bp 1 0.0701315380669585 1 0.1573865711689 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197583260 chr2:197583259 nonsynonymous SNV 0.437 3 20 hm5C_associated_SNPs_24142 0 0 0 0 1 CCDC150 chr2:197583227 3'AG 197583227 Downstream 33bp
chr2 101188229 101188229 1 + G A HNSC 101188212 + 101188192 101188232 41 TGGAAGGAGATATCAAGGCTCAGTTTATTGGTCCTCTGGTG TGGAAGGAGATATCAAGGCTCAGTTTATTGGTCCTCTAGTG < 41bp 1 0.409800577485289 1 0.380374938249588 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PDCL3 ENSG00000115539 CDS Human protein_coding chr2:101188212 chr2:101188229 synonymous SNV . 0 38 hm5C_associated_SNPs_24143 0 0 1 0 1 PDCL3 chr2:101188260 5'GT 101188260 Upstream 32bp
chr20 47639640 47639640 1 + G T HNSC 47639658 + 47639638 47639678 41 TTGATACAGACCATTGACAACATTGTGTTCTACCCTGCGAC TTTATACAGACCATTGACAACATTGTGTTCTACCCTGCGAC < 41bp 1 0.118562497535919 1 0.104647129774094 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47639658 chr20:47639640 nonsynonymous SNV 0.998 4 3 hm5C_associated_SNPs_24144 0 0 1 0 2 ARFGEF2 chr20:47639588 3'AG 47639588 Downstream 53bp
chr20 47639640 47639640 1 + G T HNSC 47639658 + 47639638 47639678 41 TTGATACAGACCATTGACAACATTGTGTTCTACCCTGCGAC TTTATACAGACCATTGACAACATTGTGTTCTACCCTGCGAC < 41bp 1 0.118562497535919 1 0.104647129774094 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47639658 chr20:47639640 nonsynonymous SNV 0.998 4 3 hm5C_associated_SNPs_24144 0 0 1 0 2 ARFGEF2 chr20:47639718 5'GT 47639718 Upstream 79bp
chr22 42033722 42033722 1 + G C HNSC 42033729 + 42033709 42033749 41 CAGGGTTCACTTTGAGGAATCCAGCAAGCTAGAAGACCTGT CAGGGTTCACTTTCAGGAATCCAGCAAGCTAGAAGACCTGT < 41bp 1 0.194433512904386 1 0.162341594696045 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42033729 chr22:42033722 nonsynonymous SNV 0.989 1 14 hm5C_associated_SNPs_24148 0 0 1 0 1 XRCC6 chr22:42033795 5'GT 42033795 Upstream 74bp
chr17 7483866 7483866 1 + C T HNSC 7483883 + 7483863 7483903 41 TCTCATTCCCCTATGGACACCTCAGCTTTGGATTCATGCAG TCTTATTCCCCTATGGACACCTCAGCTTTGGATTCATGCAG < 41bp 1 0.406035231476967 1 0.139985173940659 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CD68 ENSG00000129226 CDS Human protein_coding chr17:7483883 chr17:7483866 nonsynonymous SNV 0.999 1 4 hm5C_associated_SNPs_24149 0 0 1 0 2 CD68 chr17:7483784 3'AG 7483784 Downstream 83bp
chr17 7483866 7483866 1 + C T HNSC 7483883 + 7483863 7483903 41 TCTCATTCCCCTATGGACACCTCAGCTTTGGATTCATGCAG TCTTATTCCCCTATGGACACCTCAGCTTTGGATTCATGCAG < 41bp 1 0.406035231476967 1 0.139985173940659 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CD68 ENSG00000129226 CDS Human protein_coding chr17:7483883 chr17:7483866 nonsynonymous SNV 0.999 1 4 hm5C_associated_SNPs_24149 0 0 1 0 2 CD68 chr17:7483903 5'GT 7483903 Upstream 38bp
chr20 398533 398533 1 + C G HNSC 398525 + 398505 398545 41 CTGTCAGCCCGCAACACCTCCCTCAACCCTCAGGAGCTGCA CTGTCAGCCCGCAACACCTCCCTCAACCGTCAGGAGCTGCA < 41bp 1 0.121486574446236 1 0.121772825717926 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBCK1 ENSG00000125826 CDS Human protein_coding chr20:398525 chr20:398533 nonsynonymous SNV 0.997 0 29 hm5C_associated_SNPs_24150 0 0 1 1 1 RBCK1 chr20:398574 5'GT 398574 Upstream 42bp
chr4 126337709 126337709 1 + G T HNSC 126337729 + 126337709 126337749 41 GAGTAACACAGAGTCTGGATCGGGAAACAAAAGAGCGCTTT TAGTAACACAGAGTCTGGATCGGGAAACAAAAGAGCGCTTT < 41bp 1 0.611815807278777 1 0.936482608318329 experiment 0.776368385442446 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126337729 chr4:126337709 nonsynonymous SNV 0.698 0 1 hm5C_associated_SNPs_24152 0 0 0 0 1 FAT4 chr4:126337777 5'GT 126337777 Upstream 69bp
chrX 70776891 70776891 1 + C T HNSC 70776893 + 70776873 70776913 41 GAGCCTTGCAGTGTTATACGCGTGCCATCCAAATTAATCCT GAGCCTTGCAGTGTTATATGCGTGCCATCCAAATTAATCCT < 41bp 1 0.211012405390125 1 0.056756466627121 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70776893 chrX:70776891 nonsynonymous SNV 0.989 3 19 hm5C_associated_SNPs_24154 0 0 1 0 2 OGT chrX:70776802 3'AG 70776802 Downstream 90bp
chrX 70776891 70776891 1 + C T HNSC 70776893 + 70776873 70776913 41 GAGCCTTGCAGTGTTATACGCGTGCCATCCAAATTAATCCT GAGCCTTGCAGTGTTATATGCGTGCCATCCAAATTAATCCT < 41bp 1 0.211012405390125 1 0.056756466627121 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70776893 chrX:70776891 nonsynonymous SNV 0.989 3 19 hm5C_associated_SNPs_24154 0 0 1 0 2 OGT chrX:70776955 5'GT 70776955 Upstream 65bp
chr4 7533275 7533275 1 + G A HNSC 7533294 + 7533274 7533314 41 CGTCCTACACCAAGCTCACCCTCCAGCCTGGTGTCACCACC CATCCTACACCAAGCTCACCCTCCAGCCTGGTGTCACCACC < 41bp 1 0.574069534511272 1 0.972537219524384 experiment 0.851860930977456 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SORCS2 ENSG00000184985 CDS Human protein_coding chr4:7533294 chr4:7533275 synonymous SNV . 0 2 hm5C_associated_SNPs_24155 0 0 0 0 2 SORCS2 chr4:7533257 3'AG 7533257 Downstream 19bp
chr4 7533275 7533275 1 + G A HNSC 7533294 + 7533274 7533314 41 CGTCCTACACCAAGCTCACCCTCCAGCCTGGTGTCACCACC CATCCTACACCAAGCTCACCCTCCAGCCTGGTGTCACCACC < 41bp 1 0.574069534511272 1 0.972537219524384 experiment 0.851860930977456 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SORCS2 ENSG00000184985 CDS Human protein_coding chr4:7533294 chr4:7533275 synonymous SNV . 0 2 hm5C_associated_SNPs_24155 0 0 0 0 2 SORCS2 chr4:7533356 5'GT 7533356 Upstream 82bp
chr10 105174888 105174888 1 + G T HNSC 105174899 + 105174879 105174919 41 TACCACATCGGGGATGAGGTCAAGTGCCGGGTGAGCCTCCT TACCACATCTGGGATGAGGTCAAGTGCCGGGTGAGCCTCCT < 41bp 1 0.464265265283054 1 0.786069571971893 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105174899 chr10:105174888 nonsynonymous SNV 0.436 4 10 hm5C_associated_SNPs_24156 0 0 1 0 1 PDCD11 chr10:105174908 5'GT 105174908 Upstream 21bp
chr13 48832958 48832958 1 + A G HNSC 48832941 + 48832921 48832961 41 TTCTGAATGTAGGCTGGAACCTATTTGCCTCAGTCCTATCT TTCTGAATGTAGGCTGGAACCTATTTGCCTCAGTCCTGTCT < 41bp 1 0.479433371405247 1 0.0283579230308533 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITM2B ENSG00000136156 CDS Human protein_coding chr13:48832941 chr13:48832958 nonsynonymous SNV 0.977 3 38 hm5C_associated_SNPs_24157 0 0 1 0 1 ITM2B chr13:48832933 3'AG 48832933 Downstream 26bp
chr16 27642470 27642470 1 + G A HNSC 27642481 + 27642461 27642501 41 TCCAGCGCCGAGGATGGCACCAGGTCTGGAGACTGTGGCCC TCCAGCGCCAAGGATGGCACCAGGTCTGGAGACTGTGGCCC < 41bp 1 0.540172726989613 1 0.413510024547577 experiment 0.919654546020774 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27642481 chr16:27642470 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_24158 0 0 1 0 2 KIAA0556 chr16:27642386 3'AG 27642386 Downstream 85bp
chr16 27642470 27642470 1 + G A HNSC 27642481 + 27642461 27642501 41 TCCAGCGCCGAGGATGGCACCAGGTCTGGAGACTGTGGCCC TCCAGCGCCAAGGATGGCACCAGGTCTGGAGACTGTGGCCC < 41bp 1 0.540172726989613 1 0.413510024547577 experiment 0.919654546020774 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27642481 chr16:27642470 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_24158 0 0 1 0 2 KIAA0556 chr16:27642483 5'GT 27642483 Upstream 14bp
chr22 18979485 18979485 1 + A G HNSC 18979466 + 18979446 18979486 41 AGATGGAGAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAAC AGATGGAGAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAGC < 41bp 1 0.111858105173061 1 0.0705478191375732 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979466 chr22:18979485 . . 0 40 hm5C_associated_SNPs_24162 0 0 1 2 1 DGCR5 chr22:18979530 5'GT 18979530 Upstream 46bp
chr14 53175510 53175510 1 + A T HNSC 53175498 + 53175478 53175518 41 CTAGTCATTGTTAAAGCTACCAATGGACCAAGATATGTTGT CTAGTCATTGTTAAAGCTACCAATGGACCAAGTTATGTTGT < 41bp 1 0.185572770814402 1 0.52203094959259 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMC6 ENSG00000100519 CDS Human protein_coding chr14:53175498 chr14:53175510 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_24166 0 0 1 0 2 PSMC6 chr14:53175482 3'AG 53175482 Downstream 29bp
chr14 53175510 53175510 1 + A T HNSC 53175498 + 53175478 53175518 41 CTAGTCATTGTTAAAGCTACCAATGGACCAAGATATGTTGT CTAGTCATTGTTAAAGCTACCAATGGACCAAGTTATGTTGT < 41bp 1 0.185572770814402 1 0.52203094959259 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMC6 ENSG00000100519 CDS Human protein_coding chr14:53175498 chr14:53175510 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_24166 0 0 1 0 2 PSMC6 chr14:53175534 5'GT 53175534 Upstream 25bp
chr11 46387882 46387882 1 + G A HNSC 46387881 + 46387861 46387901 41 GGGCAGCAGCGGCCCAGCAGCGTGGGGCTGCCCACAGGCAA GGGCAGCAGCGGCCCAGCAGCATGGGGCTGCCCACAGGCAA < 41bp 1 0.698497402090656 1 0.696611225605011 experiment 0.603005195818688 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46387881 chr11:46387882 nonsynonymous SNV 0.250 0 22 hm5C_associated_SNPs_24169 0 0 1 0 1 DGKZ chr11:46387794 3'AG 46387794 Downstream 89bp
chr1 117631445 117631445 1 + G A HNSC 117631430 + 117631410 117631450 41 GTGATTCTTCCAGGGCACCTCAACACCTTTGCTTCGAATAG GTGATTCTTCCAGGGCACCTCAACACCTTTGCTTCAAATAG < 41bp 1 0.542281491538116 1 0.3409583568573 experiment 0.915437016923768 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117631430 chr1:117631445 nonsynonymous SNV 0.978 1 36 hm5C_associated_SNPs_24170 0 0 1 0 1 TTF2 chr1:117631423 3'AG 117631423 Downstream 23bp
chr12 98941400 98941400 1 + C T HNSC 98941402 + 98941382 98941422 41 GCAGGCCGGCCATTAGAACTCAGTGATTTCAGGATGGAGGA GCAGGCCGGCCATTAGAATTCAGTGATTTCAGGATGGAGGA < 41bp 1 0.713351147307948 1 0.203604996204376 experiment 0.573297705384104 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMPO ENSG00000120802 CDS Human protein_coding chr12:98941402 chr12:98941400 nonsynonymous SNV 0.998 0 19 hm5C_associated_SNPs_24171 0 0 1 1 1 TMPO chr12:98941351 3'AG 98941351 Downstream 50bp
chr6 41557787 41557787 1 + G A HNSC 41557781 + 41557761 41557801 41 TTCCCAGATGGTCTCGTGCACCCCCCGACCTCGGCCGCAGC TTCCCAGATGGTCTCGTGCACCCCCCAACCTCGGCCGCAGC < 41bp 1 0.118734376192792 1 0.0396743416786194 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41557781 chr6:41557787 synonymous SNV . 0 27 hm5C_associated_SNPs_24172 0 0 1 0 2 FOXP4 chr6:41557701 3'AG 41557701 Downstream 87bp
chr6 41557787 41557787 1 + G A HNSC 41557781 + 41557761 41557801 41 TTCCCAGATGGTCTCGTGCACCCCCCGACCTCGGCCGCAGC TTCCCAGATGGTCTCGTGCACCCCCCAACCTCGGCCGCAGC < 41bp 1 0.118734376192792 1 0.0396743416786194 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41557781 chr6:41557787 synonymous SNV . 0 27 hm5C_associated_SNPs_24172 0 0 1 0 2 FOXP4 chr6:41557737 3'AG 41557737 Downstream 51bp
chr11 73068155 73068155 1 + C T HNSC 73068165 + 73068145 73068185 41 AAGTCAGGCTCCCTGCGGCGCAGCTCCATGAGCCTGTGAGT AAGTCAGGCTTCCTGCGGCGCAGCTCCATGAGCCTGTGAGT < 41bp 1 0.114202268048556 1 0.0458849370479584 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73068165 chr11:73068155 nonsynonymous SNV 0.991 4 11 hm5C_associated_SNPs_24174 0 0 1 0 2 ARHGEF17 chr11:73068070 3'AG 73068070 Downstream 86bp
chr11 73068155 73068155 1 + C T HNSC 73068165 + 73068145 73068185 41 AAGTCAGGCTCCCTGCGGCGCAGCTCCATGAGCCTGTGAGT AAGTCAGGCTTCCTGCGGCGCAGCTCCATGAGCCTGTGAGT < 41bp 1 0.114202268048556 1 0.0458849370479584 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73068165 chr11:73068155 nonsynonymous SNV 0.991 4 11 hm5C_associated_SNPs_24174 0 0 1 0 2 ARHGEF17 chr11:73068179 5'GT 73068179 Upstream 25bp
chr11 67818101 67818101 1 + C A HNSC 67818104 + 67818084 67818124 41 GGTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGC GGTGATGGAGGGACTCTAAGCCTTCCTGCACGCCCTGCGGC < 41bp 1 0.05531868723955 1 0.336641371250153 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818104 chr11:67818101 stopgain 0.986 1 18 hm5C_associated_SNPs_24175 0 0 1 0 1 TCIRG1 chr11:67818131 5'GT 67818131 Upstream 31bp
chr11 67818101 67818101 1 + C A HNSC 67818105 + 67818085 67818125 41 GTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGCT GTGATGGAGGGACTCTAAGCCTTCCTGCACGCCCTGCGGCT < 41bp 1 0.152148252500449 1 0.398286253213882 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818105 chr11:67818101 stopgain 0.986 1 17 hm5C_associated_SNPs_24176 0 0 1 0 1 TCIRG1 chr11:67818131 5'GT 67818131 Upstream 31bp
chr10 106014946 106014946 1 + G A HNSC 106014932 + 106014912 106014952 41 CCCCGGCAGGAAGCGCGCCCCCGGGGCCGGTCCCGGAGGGC CCCCGGCAGGAAGCGCGCCCCCGGGGCCGGTCCCAGAGGGC < 41bp 1 0.755126424401473 1 0.880974471569061 experiment 0.489747151197054 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GSTO1 ENSG00000148834 CDS Human protein_coding chr10:106014932 chr10:106014946 synonymous SNV . 0 35 hm5C_associated_SNPs_24177 0 0 1 0 2 GSTO1 chr10:106014921 3'AG 106014921 Downstream 26bp
chr10 106014946 106014946 1 + G A HNSC 106014932 + 106014912 106014952 41 CCCCGGCAGGAAGCGCGCCCCCGGGGCCGGTCCCGGAGGGC CCCCGGCAGGAAGCGCGCCCCCGGGGCCGGTCCCAGAGGGC < 41bp 1 0.755126424401473 1 0.880974471569061 experiment 0.489747151197054 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GSTO1 ENSG00000148834 CDS Human protein_coding chr10:106014932 chr10:106014946 synonymous SNV . 0 35 hm5C_associated_SNPs_24177 0 0 1 0 2 GSTO1 chr10:106015029 5'GT 106015029 Upstream 84bp
chr1 38484941 38484941 1 + C T HNSC 38484930 + 38484910 38484950 41 TGTCTTGAATTTTAGTTGAACAGTTTGATGTCGCAACTCAC TGTCTTGAATTTTAGTTGAACAGTTTGATGTTGCAACTCAC < 41bp 1 0.24076123437915 1 0.0480068027973175 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UTP11 ENSG00000183520 CDS Human protein_coding chr1:38484930 chr1:38484941 synonymous SNV . 0 32 hm5C_associated_SNPs_24179 0 0 1 0 1 UTP11 chr1:38484925 3'AG 38484925 Downstream 17bp
chr1 33957252 33957252 1 + C T HNSC 33957260 + 33957240 33957280 41 ATGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGGCCCCA ATGTTGAGTCTATCCAGGGGCCCAGGATTGCAGGGGCCCCA < 41bp 1 0.24189688351206 1 0.0614194571971893 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957260 chr1:33957252 nonsynonymous SNV 0.004 0 13 hm5C_associated_SNPs_24180 0 0 1 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 51bp
chr1 33957252 33957252 1 + C T HNSC 33957261 + 33957241 33957281 41 TGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGGCCCCAG TGTTGAGTCTATCCAGGGGCCCAGGATTGCAGGGGCCCCAG < 41bp 1 0.552383645212433 1 0.449267566204071 experiment 0.895232709575134 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957261 chr1:33957252 nonsynonymous SNV 0.004 0 12 hm5C_associated_SNPs_24181 0 0 1 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 51bp
chr19 58757773 58757773 1 + G A HNSC 58757778 + 58757758 58757798 41 TGACACTGGAGACCTGGGAGCATATTGTCTCCCTGGGTAAG TGACACTGGAGACCTAGGAGCATATTGTCTCCCTGGGTAAG < 41bp 1 0.210215588388385 1 0.0670055747032166 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58757778 chr19:58757773 stopgain 0.403 0 16 hm5C_associated_SNPs_24182 0 0 1 0 1 ZNF544 chr19:58757793 5'GT 58757793 Upstream 21bp
chr8 145151588 145151588 1 + C T HNSC 145151587 + 145151567 145151607 41 TCTACTTCAACCCCTACTTTCCTGGCCAGGCCATTGCCATG TCTACTTCAACCCCTACTTTCTTGGCCAGGCCATTGCCATG < 41bp 1 0.548706069677348 1 0.212844759225845 experiment 0.902587860645305 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151587 chr8:145151588 nonsynonymous SNV 0.980 2 22 hm5C_associated_SNPs_24183 0 0 1 0 1 CYC1 chr8:145151647 5'GT 145151647 Upstream 60bp
chr12 53516948 53516948 1 + C T HNSC 53516960 + 53516940 53516980 41 TTCTGCTTCGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT TTCTGCTTTGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT < 41bp 1 0.138824514597518 1 0.0341310501098633 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53516960 chr12:53516948 synonymous SNV . 0 9 hm5C_associated_SNPs_24184 0 0 0 0 2 SOAT2 chr12:53516865 3'AG 53516865 Downstream 84bp
chr12 53516948 53516948 1 + C T HNSC 53516960 + 53516940 53516980 41 TTCTGCTTCGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT TTCTGCTTTGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT < 41bp 1 0.138824514597518 1 0.0341310501098633 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53516960 chr12:53516948 synonymous SNV . 0 9 hm5C_associated_SNPs_24184 0 0 0 0 2 SOAT2 chr12:53517000 5'GT 53517000 Upstream 53bp
chr18 48581281 48581281 1 + C G HNSC 48581284 + 48581264 48581304 41 GCATCGACAGAGACATACAGCACCCCAGCTCTGTTAGCCCC GCATCGACAGAGACATAGAGCACCCCAGCTCTGTTAGCCCC < 41bp 1 0.351275541932043 1 0.220367640256882 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48581284 chr18:48581281 stopgain 1.000 1 18 hm5C_associated_SNPs_24185 0 0 1 0 1 SMAD4 chr18:48581363 5'GT 48581363 Upstream 83bp
chrX 49853388 49853388 1 + G A HNSC 49853386 + 49853366 49853406 41 CCTCTTTATCCCTAGCATGGCTGTTGGTGCTATAGCAGGTC CCTCTTTATCCCTAGCATGGCTATTGGTGCTATAGCAGGTC < 41bp 1 0.103298729435809 1 0.116210699081421 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLCN5 ENSG00000171365 CDS Human protein_coding chrX:49853386 chrX:49853388 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_24188 0 0 0 0 1 CLCN5 chrX:49853355 3'AG 49853355 Downstream 34bp
chr9 116764924 116764924 1 + G T HNSC 116764935 + 116764915 116764955 41 ACCTCAGGGGAGGGAGCCTCCCAAAGCAGTGAGTACTTTTT ACCTCAGGGTAGGGAGCCTCCCAAAGCAGTGAGTACTTTTT < 41bp 1 0.260867445097314 1 0.416802167892456 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116764935 chr9:116764924 stopgain 1.000 1 10 hm5C_associated_SNPs_24191 0 0 0 0 2 ZNF618 chr9:116764904 3'AG 116764904 Downstream 21bp
chr9 116764924 116764924 1 + G T HNSC 116764935 + 116764915 116764955 41 ACCTCAGGGGAGGGAGCCTCCCAAAGCAGTGAGTACTTTTT ACCTCAGGGTAGGGAGCCTCCCAAAGCAGTGAGTACTTTTT < 41bp 1 0.260867445097314 1 0.416802167892456 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116764935 chr9:116764924 stopgain 1.000 1 10 hm5C_associated_SNPs_24191 0 0 0 0 2 ZNF618 chr9:116764942 5'GT 116764942 Upstream 19bp
chr4 123748456 123748456 1 + A T HNSC 123748458 + 123748438 123748478 41 GGGGGCTTCTTCCTGCGCATCCACCCCGACGGCCGAGTTGA GGGGGCTTCTTCCTGCGCTTCCACCCCGACGGCCGAGTTGA < 41bp 1 0.132607948021073 1 0.0347273945808411 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGF2 ENSG00000138685 CDS Human protein_coding chr4:123748458 chr4:123748456 nonsynonymous SNV 0.989 4 19 hm5C_associated_SNPs_24192 0 0 1 0 1 FGF2 chr4:123748507 5'GT 123748507 Upstream 52bp
chr4 123748456 123748456 1 + A T HNSC 123748462 + 123748442 123748482 41 GCTTCTTCCTGCGCATCCACCCCGACGGCCGAGTTGACGGG GCTTCTTCCTGCGCTTCCACCCCGACGGCCGAGTTGACGGG < 41bp 1 0.750596066867925 1 0.211326748132706 experiment 0.49880786626415 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGF2 ENSG00000138685 CDS Human protein_coding chr4:123748462 chr4:123748456 nonsynonymous SNV 0.989 4 15 hm5C_associated_SNPs_24193 0 0 1 0 1 FGF2 chr4:123748507 5'GT 123748507 Upstream 52bp
chr12 120876216 120876216 1 + G T HNSC 120876203 + 120876183 120876223 41 TCGCATGTGGAAGACTCTCACCTTCTTCGTCGCGCTCCCCG TCGCATGTGGAAGACTCTCACCTTCTTCGTCGCTCTCCCCG < 41bp 1 0.0965255873559682 1 0.0591717064380646 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COX6A1 ENSG00000111775;ENSG00000111780 CDS Human other chr12:120876203 chr12:120876216 synonymous SNV . 0 34 hm5C_associated_SNPs_24194 0 0 1 0 1 COX6A1 chr12:120876182 3'AG 120876182 Downstream 35bp
chr12 120876216 120876216 1 + G T HNSC 120876210 + 120876190 120876230 41 TGGAAGACTCTCACCTTCTTCGTCGCGCTCCCCGGGGTGGC TGGAAGACTCTCACCTTCTTCGTCGCTCTCCCCGGGGTGGC < 41bp 1 0.553877750007772 1 0.30914232134819 experiment 0.892244499984457 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control COX6A1 ENSG00000111775;ENSG00000111780 CDS Human other chr12:120876210 chr12:120876216 synonymous SNV . 0 27 hm5C_associated_SNPs_24195 0 0 1 0 1 COX6A1 chr12:120876182 3'AG 120876182 Downstream 35bp
chr12 113730845 113730845 1 + G T HNSC 113730854 + 113730834 113730874 41 GTCACCAGGCTGCTGGAGACCCTCTCCCAGATGGAGAGATA GTCACCAGGCTTCTGGAGACCCTCTCCCAGATGGAGAGATA < 41bp 1 0.0689098192760458 1 0.0435196161270142 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113730854 chr12:113730845 synonymous SNV . 0 12 hm5C_associated_SNPs_24197 0 0 1 0 1 TPCN1 chr12:113730878 5'GT 113730878 Upstream 34bp
chr16 29848052 29848052 1 + C T HNSC 29848064 + 29848044 29848084 41 CAGCCCTGCACCTCCGGGCTCGGCGGAACTTCCGGGACTTC CAGCCCTGTACCTCCGGGCTCGGCGGAACTTCCGGGACTTC < 41bp 1 0.705677973989123 1 0.758337795734406 experiment 0.588644052021755 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29848064 chr16:29848052 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_24199 0 0 1 0 1 MVP chr16:29848043 3'AG 29848043 Downstream 10bp
chr13 99098961 99098961 1 + G A HNSC 99098975 + 99098955 99098995 41 CTACTCGCTCACCATCCCCTCTGAGTCCGAGAACATCCAGA CTACTCACTCACCATCCCCTCTGAGTCCGAGAACATCCAGA < 41bp 1 0.239125807690343 1 0.0542246699333191 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99098975 chr13:99098961 synonymous SNV . 0 7 hm5C_associated_SNPs_24200 0 0 1 0 1 FARP1 chr13:99098920 3'AG 99098920 Downstream 42bp
chr13 99098961 99098961 1 + G A HNSC 99098981 + 99098961 99099001 41 GCTCACCATCCCCTCTGAGTCCGAGAACATCCAGAAAGACT ACTCACCATCCCCTCTGAGTCCGAGAACATCCAGAAAGACT < 41bp 1 0.144439372574497 1 0.625325441360474 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99098981 chr13:99098961 synonymous SNV . 0 1 hm5C_associated_SNPs_24201 0 0 1 0 1 FARP1 chr13:99098920 3'AG 99098920 Downstream 42bp
chr19 45573294 45573294 1 + G A HNSC 45573290 + 45573270 45573310 41 GCCTTCGCAGGGAGCGGGAACGCCGAGAGAAGGAGAGAGAA GCCTTCGCAGGGAGCGGGAACGCCAAGAGAAGGAGAGAGAA < 41bp 1 0.789993928537463 1 0.719563245773315 experiment 0.420012142925074 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CLASRP ENSG00000104859 CDS Human protein_coding chr19:45573290 chr19:45573294 nonsynonymous SNV 0.991 3 25 hm5C_associated_SNPs_24202 0 0 1 0 2 CLASRP chr19:45573280 3'AG 45573280 Downstream 15bp
chr19 45573294 45573294 1 + G A HNSC 45573290 + 45573270 45573310 41 GCCTTCGCAGGGAGCGGGAACGCCGAGAGAAGGAGAGAGAA GCCTTCGCAGGGAGCGGGAACGCCAAGAGAAGGAGAGAGAA < 41bp 1 0.789993928537463 1 0.719563245773315 experiment 0.420012142925074 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CLASRP ENSG00000104859 CDS Human protein_coding chr19:45573290 chr19:45573294 nonsynonymous SNV 0.991 3 25 hm5C_associated_SNPs_24202 0 0 1 0 2 CLASRP chr19:45573362 5'GT 45573362 Upstream 69bp
chr19 45573294 45573294 1 + G A HNSC 45573292 + 45573272 45573312 41 CTTCGCAGGGAGCGGGAACGCCGAGAGAAGGAGAGAGAAGA CTTCGCAGGGAGCGGGAACGCCAAGAGAAGGAGAGAGAAGA < 41bp 1 0.403198816891628 1 0.732563436031342 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CLASRP ENSG00000104859 CDS Human protein_coding chr19:45573292 chr19:45573294 nonsynonymous SNV 0.991 3 23 hm5C_associated_SNPs_24203 0 0 1 0 2 CLASRP chr19:45573280 3'AG 45573280 Downstream 15bp
chr19 45573294 45573294 1 + G A HNSC 45573292 + 45573272 45573312 41 CTTCGCAGGGAGCGGGAACGCCGAGAGAAGGAGAGAGAAGA CTTCGCAGGGAGCGGGAACGCCAAGAGAAGGAGAGAGAAGA < 41bp 1 0.403198816891628 1 0.732563436031342 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CLASRP ENSG00000104859 CDS Human protein_coding chr19:45573292 chr19:45573294 nonsynonymous SNV 0.991 3 23 hm5C_associated_SNPs_24203 0 0 1 0 2 CLASRP chr19:45573362 5'GT 45573362 Upstream 69bp
chr3 179104304 179104304 1 + G A HNSC 179104323 + 179104303 179104343 41 GGACCACCCATGCCAAGGAGCGAGCCTTTAAACAGCAGTTT GAACCACCCATGCCAAGGAGCGAGCCTTTAAACAGCAGTTT < 41bp 1 0.338165394772346 1 0.340585052967072 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MFN1 ENSG00000171109 CDS Human protein_coding chr3:179104323 chr3:179104304 stopgain 0.973 1 2 hm5C_associated_SNPs_24206 0 0 1 0 1 MFN1 chr3:179104221 3'AG 179104221 Downstream 84bp
chr3 179104303 179104303 1 + G A HNSC 179104323 + 179104303 179104343 41 GGACCACCCATGCCAAGGAGCGAGCCTTTAAACAGCAGTTT AGACCACCCATGCCAAGGAGCGAGCCTTTAAACAGCAGTTT < 41bp 1 0.350331901680518 1 0.27801924943924 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MFN1 ENSG00000171109 CDS Human protein_coding chr3:179104323 chr3:179104303 stopgain 0.972 1 1 hm5C_associated_SNPs_24207 0 0 1 0 1 MFN1 chr3:179104221 3'AG 179104221 Downstream 83bp
chr5 175933836 175933836 1 + C T HNSC 175933837 + 175933817 175933857 41 CAGATTGAAGCCAATTTTCCCAGGCGAGTGCTGCCCTGCAT CAGATTGAAGCCAATTTTCTCAGGCGAGTGCTGCCCTGCAT < 41bp 1 0.762683004739615 1 0.933677196502686 experiment 0.474633990520771 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAF2 ENSG00000113194 CDS Human protein_coding chr5:175933837 chr5:175933836 nonsynonymous SNV 0.997 4 20 hm5C_associated_SNPs_24208 0 0 1 0 1 FAF2 chr5:175933769 3'AG 175933769 Downstream 68bp
chr5 175933836 175933836 1 + C T HNSC 175933855 + 175933835 175933875 41 CCCAGGCGAGTGCTGCCCTGCATCCCTTCAGAGGAGTGGCC CTCAGGCGAGTGCTGCCCTGCATCCCTTCAGAGGAGTGGCC < 41bp 1 0.105753925011115 1 0.110507071018219 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAF2 ENSG00000113194 CDS Human protein_coding chr5:175933855 chr5:175933836 nonsynonymous SNV 0.997 4 2 hm5C_associated_SNPs_24209 0 0 1 0 1 FAF2 chr5:175933769 3'AG 175933769 Downstream 68bp
chrX 99920267 99920267 1 + C T HNSC 99920250 + 99920230 99920270 41 ATCTTGGCAGACATAGATCCCCCCAAGATCCGCTGTCCCCA ATCTTGGCAGACATAGATCCCCCCAAGATCCGCTGTCTCCA < 41bp 1 0.612763234449306 1 0.283730804920197 experiment 0.774473531101387 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99920250 chrX:99920267 nonsynonymous SNV 0.996 4 38 hm5C_associated_SNPs_24211 0 0 0 0 2 SRPX2 chrX:99920240 3'AG 99920240 Downstream 28bp
chrX 99920267 99920267 1 + C T HNSC 99920250 + 99920230 99920270 41 ATCTTGGCAGACATAGATCCCCCCAAGATCCGCTGTCCCCA ATCTTGGCAGACATAGATCCCCCCAAGATCCGCTGTCTCCA < 41bp 1 0.612763234449306 1 0.283730804920197 experiment 0.774473531101387 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99920250 chrX:99920267 nonsynonymous SNV 0.996 4 38 hm5C_associated_SNPs_24211 0 0 0 0 2 SRPX2 chrX:99920366 5'GT 99920366 Upstream 100bp
chr17 16342695 16342695 1 + C T HNSC 16342711 + 16342691 16342731 41 CGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTA CGGCTCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTA < 41bp 1 0.359319145714849 1 0.198888063430786 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342711 chr17:16342695 . . 0 5 hm5C_associated_SNPs_24212 0 0 1 0 3 LRRC75A-AS1 chr17:16342641 3'AG 16342641 Downstream 55bp
chr17 16342695 16342695 1 + C T HNSC 16342711 + 16342691 16342731 41 CGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTA CGGCTCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTA < 41bp 1 0.359319145714849 1 0.198888063430786 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342711 chr17:16342695 . . 0 5 hm5C_associated_SNPs_24212 0 0 1 0 3 LRRC75A-AS1 chr17:16342707 5'GT 16342707 Upstream 13bp
chr17 16342695 16342695 1 + C T HNSC 16342711 + 16342691 16342731 41 CGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTA CGGCTCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTA < 41bp 1 0.359319145714849 1 0.198888063430786 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342711 chr17:16342695 . . 0 5 hm5C_associated_SNPs_24212 0 0 1 0 3 LRRC75A-AS1 chr17:16342728 5'GT 16342728 Upstream 34bp
chr7 98501139 98501139 1 + C T HNSC 98501140 + 98501120 98501160 41 TCACCACAGAGCTGAGAAACCGTACGTCCAGCCTGTCTTGT TCACCACAGAGCTGAGAAATCGTACGTCCAGCCTGTCTTGT < 41bp 1 0.132998924741235 1 0.114034652709961 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98501140 chr7:98501139 synonymous SNV . 0 20 hm5C_associated_SNPs_24214 0 0 1 0 1 TRRAP chr7:98501140 5'GT 98501140 Upstream 2bp
chr6 25551232 25551232 1 + C T HNSC 25551227 + 25551207 25551247 41 CGACAAGACTTGATTCATGCCAGCACCGAAAAGATTTCTAT CGACAAGACTTGATTCATGCCAGCATCGAAAAGATTTCTAT < 41bp 1 0.521955522138118 1 0.35769909620285 experiment 0.956088955723763 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25551227 chr6:25551232 nonsynonymous SNV 0.997 0 26 hm5C_associated_SNPs_24215 0 0 0 0 2 CARMIL1 chr6:25551138 3'AG 25551138 Downstream 95bp
chr6 25551232 25551232 1 + C T HNSC 25551227 + 25551207 25551247 41 CGACAAGACTTGATTCATGCCAGCACCGAAAAGATTTCTAT CGACAAGACTTGATTCATGCCAGCATCGAAAAGATTTCTAT < 41bp 1 0.521955522138118 1 0.35769909620285 experiment 0.956088955723763 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25551227 chr6:25551232 nonsynonymous SNV 0.997 0 26 hm5C_associated_SNPs_24215 0 0 0 0 2 CARMIL1 chr6:25551313 5'GT 25551313 Upstream 82bp
chr10 134016249 134016249 1 + G T HNSC 134016266 + 134016246 134016286 41 TTTGTCACCCCGGGGGCGGGCCGCTTCGTCCCTCGGAAAAC TTTTTCACCCCGGGGGCGGGCCGCTTCGTCCCTCGGAAAAC < 41bp 1 0.218227734210288 1 0.237871915102005 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134016266 chr10:134016249 nonsynonymous SNV 0.036 1 4 hm5C_associated_SNPs_24219 0 0 0 0 1 DPYSL4 chr10:134016150 3'AG 134016150 Downstream 100bp
chr17 79990328 79990328 1 + C T HNSC 79990314 + 79990294 79990334 41 TACACGACCAACGCCTTCCCCGGAGAGTACATCCCCACCGT TACACGACCAACGCCTTCCCCGGAGAGTACATCCTCACCGT < 41bp 1 0.73183091949279 1 0.791126549243927 experiment 0.536338161014419 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RAC3 ENSG00000169750 CDS Human protein_coding chr17:79990314 chr17:79990328 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_24223 0 0 1 0 2 RAC3 chr17:79990263 3'AG 79990263 Downstream 66bp
chr17 79990328 79990328 1 + C T HNSC 79990314 + 79990294 79990334 41 TACACGACCAACGCCTTCCCCGGAGAGTACATCCCCACCGT TACACGACCAACGCCTTCCCCGGAGAGTACATCCTCACCGT < 41bp 1 0.73183091949279 1 0.791126549243927 experiment 0.536338161014419 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RAC3 ENSG00000169750 CDS Human protein_coding chr17:79990314 chr17:79990328 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_24223 0 0 1 0 2 RAC3 chr17:79990334 5'GT 79990334 Upstream 7bp
chr20 44430653 44430653 1 + C T HNSC 44430647 + 44430627 44430667 41 TTTTGTGGCAGAGGAAAGGACGGCCTCCTGGACACATCCTG TTTTGTGGCAGAGGAAAGGACGGCCTTCTGGACACATCCTG < 41bp 1 0.556190540608396 1 0.333138793706894 experiment 0.887618918783208 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44430647 chr20:44430653 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_24229 0 0 1 0 2 DNTTIP1 chr20:44430638 3'AG 44430638 Downstream 16bp
chr20 44430653 44430653 1 + C T HNSC 44430647 + 44430627 44430667 41 TTTTGTGGCAGAGGAAAGGACGGCCTCCTGGACACATCCTG TTTTGTGGCAGAGGAAAGGACGGCCTTCTGGACACATCCTG < 41bp 1 0.556190540608396 1 0.333138793706894 experiment 0.887618918783208 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44430647 chr20:44430653 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_24229 0 0 1 0 2 DNTTIP1 chr20:44430696 5'GT 44430696 Upstream 44bp
chr5 149772279 149772279 1 + C T HNSC 149772283 + 149772263 149772303 41 TCCAGTAGGTCCCACCCCCTCCAGGACAGAGACCCTGGTGG TCCAGTAGGTCCCACCTCCTCCAGGACAGAGACCCTGGTGG < 41bp 1 0.552789659881002 1 0.878966927528381 experiment 0.894420680237996 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149772283 chr5:149772279 nonsynonymous SNV 0.005 1 17 hm5C_associated_SNPs_24230 0 0 1 0 3 TCOF1 chr5:149772268 3'AG 149772268 Downstream 12bp
chr5 149772279 149772279 1 + C T HNSC 149772283 + 149772263 149772303 41 TCCAGTAGGTCCCACCCCCTCCAGGACAGAGACCCTGGTGG TCCAGTAGGTCCCACCTCCTCCAGGACAGAGACCCTGGTGG < 41bp 1 0.552789659881002 1 0.878966927528381 experiment 0.894420680237996 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149772283 chr5:149772279 nonsynonymous SNV 0.005 1 17 hm5C_associated_SNPs_24230 0 0 1 0 3 TCOF1 chr5:149772271 3'AG 149772271 Downstream 9bp
chr5 149772279 149772279 1 + C T HNSC 149772283 + 149772263 149772303 41 TCCAGTAGGTCCCACCCCCTCCAGGACAGAGACCCTGGTGG TCCAGTAGGTCCCACCTCCTCCAGGACAGAGACCCTGGTGG < 41bp 1 0.552789659881002 1 0.878966927528381 experiment 0.894420680237996 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149772283 chr5:149772279 nonsynonymous SNV 0.005 1 17 hm5C_associated_SNPs_24230 0 0 1 0 3 TCOF1 chr5:149772353 5'GT 149772353 Upstream 75bp
chr2 228398379 228398379 1 + C T HNSC 228398373 + 228398353 228398393 41 TTCCCAGAGTCATCAAACAGCATCAGCTGTTAGTAAAGTTT TTCCCAGAGTCATCAAACAGCATCAGTTGTTAGTAAAGTTT < 41bp 1 0.423860940948609 1 0.0725222229957581 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGFG1 ENSG00000173744 CDS Human protein_coding chr2:228398373 chr2:228398379 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_24236 0 0 1 0 1 AGFG1 chr2:228398474 5'GT 228398474 Upstream 96bp
chr22 30818340 30818340 1 + C T HNSC 30818334 + 30818314 30818354 41 TCAATTTCACTGTGGAGGTCCTGCTTCCAGACAAAGCCTCA TCAATTTCACTGTGGAGGTCCTGCTTTCAGACAAAGCCTCA < 41bp 1 0.224277492708277 1 0.136543840169907 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC14L2 ENSG00000100003 CDS Human protein_coding chr22:30818334 chr22:30818340 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_24238 0 0 0 0 1 SEC14L2 chr22:30818266 3'AG 30818266 Downstream 75bp
chr6 25551233 25551233 1 + C T HNSC 25551227 + 25551207 25551247 41 CGACAAGACTTGATTCATGCCAGCACCGAAAAGATTTCTAT CGACAAGACTTGATTCATGCCAGCACTGAAAAGATTTCTAT < 41bp 1 0.502482436281261 1 0.262890934944153 experiment 0.995035127437477 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25551227 chr6:25551233 synonymous SNV . 0 27 hm5C_associated_SNPs_24239 0 0 0 0 2 CARMIL1 chr6:25551138 3'AG 25551138 Downstream 96bp
chr6 25551233 25551233 1 + C T HNSC 25551227 + 25551207 25551247 41 CGACAAGACTTGATTCATGCCAGCACCGAAAAGATTTCTAT CGACAAGACTTGATTCATGCCAGCACTGAAAAGATTTCTAT < 41bp 1 0.502482436281261 1 0.262890934944153 experiment 0.995035127437477 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25551227 chr6:25551233 synonymous SNV . 0 27 hm5C_associated_SNPs_24239 0 0 0 0 2 CARMIL1 chr6:25551313 5'GT 25551313 Upstream 81bp
chr20 36012652 36012652 1 + C T HNSC 36012654 + 36012634 36012674 41 CGCTGGCGGGGGCGCTTTCCCCGCCTCGCAGACCCCCAGCA CGCTGGCGGGGGCGCTTTTCCCGCCTCGCAGACCCCCAGCA < 41bp 1 0.61230604537385 1 0.695893526077271 experiment 0.7753879092523 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SRC ENSG00000197122 CDS Human protein_coding chr20:36012654 chr20:36012652 synonymous SNV . 0 19 hm5C_associated_SNPs_24240 0 0 0 0 1 SRC chr20:36012553 3'AG 36012553 Downstream 100bp
chr19 18856674 18856674 1 + C T HNSC 18856662 + 18856642 18856682 41 CAATCCTCGGGCCTGGACACCAGCCGGACCACCCGGCACCA CAATCCTCGGGCCTGGACACCAGCCGGACCACTCGGCACCA < 41bp 1 0.35753905329174 1 0.30661529302597 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CRTC1 ENSG00000105662 CDS Human protein_coding chr19:18856662 chr19:18856674 synonymous SNV . 0 33 hm5C_associated_SNPs_24241 0 0 0 0 1 CRTC1 chr19:18856633 3'AG 18856633 Downstream 42bp
chr19 18856674 18856674 1 + C T HNSC 18856665 + 18856645 18856685 41 TCCTCGGGCCTGGACACCAGCCGGACCACCCGGCACCATGG TCCTCGGGCCTGGACACCAGCCGGACCACTCGGCACCATGG < 41bp 1 0.511019120309751 1 0.332862168550491 experiment 0.977961759380498 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRTC1 ENSG00000105662 CDS Human protein_coding chr19:18856665 chr19:18856674 synonymous SNV . 0 30 hm5C_associated_SNPs_24242 0 0 0 0 1 CRTC1 chr19:18856633 3'AG 18856633 Downstream 42bp
chr6 31601198 31601198 1 + C T HNSC 31601218 + 31601198 31601238 41 CCCACCTCCCAGCAGTTCTGCTGTCTTCCGCCTGGACCAAG TCCACCTCCCAGCAGTTCTGCTGTCTTCCGCCTGGACCAAG < 41bp 1 0.308882609091285 1 0.131213843822479 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31601218 chr6:31601198 synonymous SNV . 0 1 hm5C_associated_SNPs_24244 0 0 1 0 1 PRRC2A chr6:31601156 3'AG 31601156 Downstream 43bp
chr19 13063836 13063836 1 + C A HNSC 13063834 + 13063814 13063854 41 AGAACTTGGCTGCCAACTTCCTCCTGAGTCAGAACTTTGAT AGAACTTGGCTGCCAACTTCCTACTGAGTCAGAACTTTGAT < 41bp 1 0.403503066011078 1 0.4743871986866 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD23A ENSG00000179262 CDS Human protein_coding chr19:13063834 chr19:13063836 synonymous SNV . 0 23 hm5C_associated_SNPs_24245 0 0 1 0 1 RAD23A chr19:13063750 3'AG 13063750 Downstream 87bp
chr3 126751349 126751349 1 + G T HNSC 126751338 + 126751318 126751358 41 TCGGTGGTGGCCCAGACCTTCATGGACTCCTGCTCCACCTC TCGGTGGTGGCCCAGACCTTCATGGACTCCTTCTCCACCTC < 41bp 1 0.364976268826355 1 0.122744351625443 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126751338 chr3:126751349 nonsynonymous SNV 0.943 4 32 hm5C_associated_SNPs_24246 0 0 1 0 1 PLXNA1 chr3:126751442 5'GT 126751442 Upstream 94bp
chr3 47030591 47030591 1 + G C HNSC 47030605 + 47030585 47030625 41 AACATAGAGGCAGGCCGGGGCCAAGTGCTAGTGCCCCGAGT AACATACAGGCAGGCCGGGGCCAAGTGCTAGTGCCCCGAGT < 41bp 1 0.0852261263984471 1 0.594394862651825 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47030605 chr3:47030591 nonsynonymous SNV 0.799 0 7 hm5C_associated_SNPs_24249 0 0 1 0 2 NBEAL2 chr3:47030575 3'AG 47030575 Downstream 17bp
chr3 47030591 47030591 1 + G C HNSC 47030605 + 47030585 47030625 41 AACATAGAGGCAGGCCGGGGCCAAGTGCTAGTGCCCCGAGT AACATACAGGCAGGCCGGGGCCAAGTGCTAGTGCCCCGAGT < 41bp 1 0.0852261263984471 1 0.594394862651825 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47030605 chr3:47030591 nonsynonymous SNV 0.799 0 7 hm5C_associated_SNPs_24249 0 0 1 0 2 NBEAL2 chr3:47030656 5'GT 47030656 Upstream 66bp
chr3 47030591 47030591 1 + G C HNSC 47030606 + 47030586 47030626 41 ACATAGAGGCAGGCCGGGGCCAAGTGCTAGTGCCCCGAGTG ACATACAGGCAGGCCGGGGCCAAGTGCTAGTGCCCCGAGTG < 41bp 1 0.387024600294236 1 0.666030406951904 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47030606 chr3:47030591 nonsynonymous SNV 0.799 0 6 hm5C_associated_SNPs_24250 0 0 1 0 2 NBEAL2 chr3:47030575 3'AG 47030575 Downstream 17bp
chr3 47030591 47030591 1 + G C HNSC 47030606 + 47030586 47030626 41 ACATAGAGGCAGGCCGGGGCCAAGTGCTAGTGCCCCGAGTG ACATACAGGCAGGCCGGGGCCAAGTGCTAGTGCCCCGAGTG < 41bp 1 0.387024600294236 1 0.666030406951904 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47030606 chr3:47030591 nonsynonymous SNV 0.799 0 6 hm5C_associated_SNPs_24250 0 0 1 0 2 NBEAL2 chr3:47030656 5'GT 47030656 Upstream 66bp
chr11 63743743 63743743 1 + C T HNSC 63743738 + 63743718 63743758 41 TCCTGCTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCT TCCTGCTTCGTGACCTTCCTCCTGCTAGCGGGCTGGATCCT < 41bp 1 0.226917863975105 1 0.733794689178467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control COX8A ENSG00000176340 CDS Human protein_coding chr11:63743738 chr11:63743743 nonsynonymous SNV 0.529 2 26 hm5C_associated_SNPs_24251 0 0 1 0 1 COX8A chr11:63743697 3'AG 63743697 Downstream 47bp
chr11 63743743 63743743 1 + C T HNSC 63743739 + 63743719 63743759 41 CCTGCTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCTG CCTGCTTCGTGACCTTCCTCCTGCTAGCGGGCTGGATCCTG < 41bp 1 0.609060977058146 1 0.455826967954636 experiment 0.781878045883708 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COX8A ENSG00000176340 CDS Human protein_coding chr11:63743739 chr11:63743743 nonsynonymous SNV 0.529 2 25 hm5C_associated_SNPs_24252 0 0 1 0 1 COX8A chr11:63743697 3'AG 63743697 Downstream 47bp
chr19 3192541 3192541 1 + C T HNSC 3192559 + 3192539 3192579 41 CTCATGCGGCTACTGGACTTCTCCTACGAGCAGTACCAGAA CTTATGCGGCTACTGGACTTCTCCTACGAGCAGTACCAGAA < 41bp 1 0.516976163024669 1 0.764112830162048 experiment 0.966047673950661 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCLN ENSG00000125912 CDS Human protein_coding chr19:3192559 chr19:3192541 synonymous SNV . 0 3 hm5C_associated_SNPs_24253 0 0 1 0 1 NCLN chr19:3192468 3'AG 3192468 Downstream 74bp
chr19 3192541 3192541 1 + C T HNSC 3192561 + 3192541 3192581 41 CATGCGGCTACTGGACTTCTCCTACGAGCAGTACCAGAAGG TATGCGGCTACTGGACTTCTCCTACGAGCAGTACCAGAAGG < 41bp 1 0.0886087820682854 1 0.375955045223236 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCLN ENSG00000125912 CDS Human protein_coding chr19:3192561 chr19:3192541 synonymous SNV . 0 1 hm5C_associated_SNPs_24254 0 0 1 0 1 NCLN chr19:3192468 3'AG 3192468 Downstream 74bp
chr17 30372816 30372816 1 + C T HNSC 30372808 + 30372788 30372828 41 AGTCAAGCTGCATTGCAACACTGCATGTCTGACTAACAGCA AGTCAAGCTGCATTGCAACACTGCATGTTTGACTAACAGCA < 41bp 1 0.663022105445645 1 0.435618489980698 experiment 0.673955789108711 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRRC37B ENSG00000185158 CDS Human protein_coding chr17:30372808 chr17:30372816 synonymous SNV . 0 29 hm5C_associated_SNPs_24255 0 0 1 0 2 LRRC37B chr17:30372719 3'AG 30372719 Downstream 98bp
chr17 30372816 30372816 1 + C T HNSC 30372808 + 30372788 30372828 41 AGTCAAGCTGCATTGCAACACTGCATGTCTGACTAACAGCA AGTCAAGCTGCATTGCAACACTGCATGTTTGACTAACAGCA < 41bp 1 0.663022105445645 1 0.435618489980698 experiment 0.673955789108711 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRRC37B ENSG00000185158 CDS Human protein_coding chr17:30372808 chr17:30372816 synonymous SNV . 0 29 hm5C_associated_SNPs_24255 0 0 1 0 2 LRRC37B chr17:30372837 5'GT 30372837 Upstream 22bp
chr3 124053163 124053163 1 + C T HNSC 124053164 + 124053144 124053184 41 GCTGCAGCGGCCCCTGAGCCCTGGGAACTCCGAATCCCTCA GCTGCAGCGGCCCCTGAGCTCTGGGAACTCCGAATCCCTCA < 41bp 1 0.716620202112691 1 0.902233242988586 experiment 0.566759595774617 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KALRN ENSG00000160145 CDS Human protein_coding chr3:124053164 chr3:124053163 nonsynonymous SNV 0.992 3 20 hm5C_associated_SNPs_24258 0 0 0 0 1 KALRN chr3:124053112 3'AG 124053112 Downstream 52bp
chr19 42839480 42839480 1 + C T HNSC 42839497 + 42839477 42839517 41 CCTCGTCCTATACAACTTCTCCGCCAACACCTGGGAGTCTT CCTTGTCCTATACAACTTCTCCGCCAACACCTGGGAGTCTT < 41bp 1 0.111991110162804 1 0.186142772436142 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42839497 chr19:42839480 synonymous SNV . 0 4 hm5C_associated_SNPs_24259 0 0 1 0 2 MEGF8 chr19:42839449 3'AG 42839449 Downstream 32bp
chr19 42839480 42839480 1 + C T HNSC 42839497 + 42839477 42839517 41 CCTCGTCCTATACAACTTCTCCGCCAACACCTGGGAGTCTT CCTTGTCCTATACAACTTCTCCGCCAACACCTGGGAGTCTT < 41bp 1 0.111991110162804 1 0.186142772436142 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42839497 chr19:42839480 synonymous SNV . 0 4 hm5C_associated_SNPs_24259 0 0 1 0 2 MEGF8 chr19:42839537 5'GT 42839537 Upstream 58bp
chr19 16962311 16962311 1 + C T HNSC 16962301 + 16962281 16962321 41 CCCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCGCTCCTC CCCCGGAGCACAGCAGGAAGCGCTCCCGGCTCTCGCTCCTC < 41bp 1 0.258371886168241 1 0.143813699483871 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIN3B ENSG00000127511 CDS Human protein_coding chr19:16962301 chr19:16962311 nonsynonymous SNV 0.962 2 31 hm5C_associated_SNPs_24263 0 0 0 0 2 SIN3B chr19:16962223 3'AG 16962223 Downstream 89bp
chr19 16962311 16962311 1 + C T HNSC 16962301 + 16962281 16962321 41 CCCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCGCTCCTC CCCCGGAGCACAGCAGGAAGCGCTCCCGGCTCTCGCTCCTC < 41bp 1 0.258371886168241 1 0.143813699483871 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIN3B ENSG00000127511 CDS Human protein_coding chr19:16962301 chr19:16962311 nonsynonymous SNV 0.962 2 31 hm5C_associated_SNPs_24263 0 0 0 0 2 SIN3B chr19:16962345 5'GT 16962345 Upstream 35bp
chr17 7800529 7800529 1 + G A HNSC 7800537 + 7800517 7800557 41 AGTGAAAGACCCGCACTATGCTGAGATGGAGGAGAAGTACT AGTGAAAGACCCACACTATGCTGAGATGGAGGAGAAGTACT < 41bp 1 0.447622052178122 1 0.213505625724792 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7800537 chr17:7800529 synonymous SNV . 0 13 hm5C_associated_SNPs_24268 0 0 1 0 1 CHD3 chr17:7800612 5'GT 7800612 Upstream 84bp
chr17 65905793 65905793 1 + G A HNSC 65905785 + 65905765 65905805 41 AATAAAAATAGAGCCTGATTCTGAAAAAGATGAGGTAAAAG AATAAAAATAGAGCCTGATTCTGAAAAAAATGAGGTAAAAG < 41bp 1 0.432915982992161 1 0.748916566371918 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65905785 chr17:65905793 nonsynonymous SNV 0.983 0 29 hm5C_associated_SNPs_24270 0 0 1 0 2 BPTF chr17:65905698 3'AG 65905698 Downstream 96bp
chr17 65905793 65905793 1 + G A HNSC 65905785 + 65905765 65905805 41 AATAAAAATAGAGCCTGATTCTGAAAAAGATGAGGTAAAAG AATAAAAATAGAGCCTGATTCTGAAAAAAATGAGGTAAAAG < 41bp 1 0.432915982992161 1 0.748916566371918 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65905785 chr17:65905793 nonsynonymous SNV 0.983 0 29 hm5C_associated_SNPs_24270 0 0 1 0 2 BPTF chr17:65905877 5'GT 65905877 Upstream 85bp
chr4 44680736 44680736 1 + G A HNSC 44680719 + 44680699 44680739 41 TGGGGCCGCGCTTCTGGTGGCCCCGGGGCCCCGGTCCGCGC TGGGGCCGCGCTTCTGGTGGCCCCGGGGCCCCGGTCCACGC < 41bp 1 0.775945275417784 1 0.375565946102142 experiment 0.448109449164432 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GUF1 ENSG00000151806 CDS Human protein_coding chr4:44680719 chr4:44680736 nonsynonymous SNV 0.001 0 38 hm5C_associated_SNPs_24274 0 0 0 0 1 GUF1 chr4:44680804 5'GT 44680804 Upstream 69bp
chr8 102381119 102381119 1 + T A HNSC 102381132 + 102381112 102381152 41 TCTTGATTCCACGTTCCCTCCACAAAATGCCTGGCGAAGCC TCTTGATACCACGTTCCCTCCACAAAATGCCTGGCGAAGCC < 41bp 1 0.690503438828665 1 0.595871686935425 experiment 0.618993122342669 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NACAP1 ENSG00000228224 ncRNA_exonic Human transcribed_processed_pseudogene chr8:102381132 chr8:102381119 . . 0 8 hm5C_associated_SNPs_24275 0 0 0 0 1 NACAP1 chr8:102381023 3'AG 102381023 Downstream 97bp
chr3 9691417 9691417 1 + C A HNSC 9691405 + 9691385 9691425 41 CAGTACCGGGCCAAGGATGGCAGCGGGACCGGCGGCTCTAA CAGTACCGGGCCAAGGATGGCAGCGGGACCGGAGGCTCTAA < 41bp 1 0.738808823633563 1 0.890848755836487 experiment 0.522382352732873 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9691405 chr3:9691417 synonymous SNV . 0 33 hm5C_associated_SNPs_24277 0 0 1 0 1 MTMR14 chr3:9691426 5'GT 9691426 Upstream 10bp
chr16 68390961 68390961 1 + G A HNSC 68390977 + 68390957 68390997 41 GGGGGCTGCTGCTGGAACCCCCACTGCAAGCAGGCCGTCTA GGGGACTGCTGCTGGAACCCCCACTGCAAGCAGGCCGTCTA < 41bp 1 0.207884992412752 1 0.464602530002594 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68390977 chr16:68390961 nonsynonymous SNV 0.315 0 5 hm5C_associated_SNPs_24278 0 0 1 0 1 PRMT7 chr16:68390957 3'AG 68390957 Downstream 5bp
chr8 120431405 120431405 1 + C G HNSC 120431390 + 120431370 120431410 41 GCTTACAGGCCAGAAGCCACCCTAGGAGTAGAAGTCTCTGA GCTTACAGGCCAGAAGCCACCCTAGGAGTAGAAGTGTCTGA < 41bp 1 0.210561571442049 1 0.124692529439926 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOV ENSG00000136999 CDS Human protein_coding chr8:120431390 chr8:120431405 synonymous SNV . 0 36 hm5C_associated_SNPs_24279 0 0 0 0 1 NOV chr8:120431371 3'AG 120431371 Downstream 35bp
chr17 55194253 55194253 1 + C A HNSC 55194240 + 55194220 55194260 41 GGTCTGACTTTGTCACCCTGCCGTTTCAGGGAGCAGAAGTC GGTCTGACTTTGTCACCCTGCCGTTTCAGGGAGAAGAAGTC < 41bp 1 0.0430556347741109 1 0.117238789796829 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194240 chr17:55194253 nonsynonymous SNV 0.999 4 34 hm5C_associated_SNPs_24288 0 0 1 0 2 AKAP1 chr17:55194221 3'AG 55194221 Downstream 33bp
chr17 55194253 55194253 1 + C A HNSC 55194240 + 55194220 55194260 41 GGTCTGACTTTGTCACCCTGCCGTTTCAGGGAGCAGAAGTC GGTCTGACTTTGTCACCCTGCCGTTTCAGGGAGAAGAAGTC < 41bp 1 0.0430556347741109 1 0.117238789796829 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194240 chr17:55194253 nonsynonymous SNV 0.999 4 34 hm5C_associated_SNPs_24288 0 0 1 0 2 AKAP1 chr17:55194288 5'GT 55194288 Upstream 36bp
chr17 55194253 55194253 1 + C A HNSC 55194241 + 55194221 55194261 41 GTCTGACTTTGTCACCCTGCCGTTTCAGGGAGCAGAAGTCC GTCTGACTTTGTCACCCTGCCGTTTCAGGGAGAAGAAGTCC < 41bp 1 0.0467620065522466 1 0.0850552916526794 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194241 chr17:55194253 nonsynonymous SNV 0.999 4 33 hm5C_associated_SNPs_24289 0 0 1 0 2 AKAP1 chr17:55194221 3'AG 55194221 Downstream 33bp
chr17 55194253 55194253 1 + C A HNSC 55194241 + 55194221 55194261 41 GTCTGACTTTGTCACCCTGCCGTTTCAGGGAGCAGAAGTCC GTCTGACTTTGTCACCCTGCCGTTTCAGGGAGAAGAAGTCC < 41bp 1 0.0467620065522466 1 0.0850552916526794 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194241 chr17:55194253 nonsynonymous SNV 0.999 4 33 hm5C_associated_SNPs_24289 0 0 1 0 2 AKAP1 chr17:55194288 5'GT 55194288 Upstream 36bp
chr9 93624537 93624537 1 + G A HNSC 93624554 + 93624534 93624574 41 CACGAAGGGAAGGTGCTGCACTATCGCATCGACAAAGACAA CACAAAGGGAAGGTGCTGCACTATCGCATCGACAAAGACAA < 41bp 1 0.169603805059491 1 0.0427922904491425 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYK ENSG00000165025 CDS Human protein_coding chr9:93624554 chr9:93624537 nonsynonymous SNV 0.914 2 4 hm5C_associated_SNPs_24291 0 0 0 0 2 SYK chr9:93624488 3'AG 93624488 Downstream 50bp
chr9 93624537 93624537 1 + G A HNSC 93624554 + 93624534 93624574 41 CACGAAGGGAAGGTGCTGCACTATCGCATCGACAAAGACAA CACAAAGGGAAGGTGCTGCACTATCGCATCGACAAAGACAA < 41bp 1 0.169603805059491 1 0.0427922904491425 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYK ENSG00000165025 CDS Human protein_coding chr9:93624554 chr9:93624537 nonsynonymous SNV 0.914 2 4 hm5C_associated_SNPs_24291 0 0 0 0 2 SYK chr9:93624626 5'GT 93624626 Upstream 90bp
chr20 44045292 44045292 1 + C A HNSC 44045286 + 44045266 44045306 41 GGGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGT GGGGCCACCCTTCCTGCAGGCCCCATAAGGTGCAGAGCTGT < 41bp 1 0.641376260254938 1 0.0407969653606415 experiment 0.717247479490124 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045286 chr20:44045292 stopgain 0.998 1 27 hm5C_associated_SNPs_24292 0 0 1 0 3 PIGT chr20:44045294 5'GT 44045294 Upstream 3bp
chr20 44045292 44045292 1 + C A HNSC 44045286 + 44045266 44045306 41 GGGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGT GGGGCCACCCTTCCTGCAGGCCCCATAAGGTGCAGAGCTGT < 41bp 1 0.641376260254938 1 0.0407969653606415 experiment 0.717247479490124 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045286 chr20:44045292 stopgain 0.998 1 27 hm5C_associated_SNPs_24292 0 0 1 0 3 PIGT chr20:44045304 5'GT 44045304 Upstream 13bp
chr20 44045292 44045292 1 + C A HNSC 44045286 + 44045266 44045306 41 GGGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGT GGGGCCACCCTTCCTGCAGGCCCCATAAGGTGCAGAGCTGT < 41bp 1 0.641376260254938 1 0.0407969653606415 experiment 0.717247479490124 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045286 chr20:44045292 stopgain 0.998 1 27 hm5C_associated_SNPs_24292 0 0 1 0 3 PIGT chr20:44045334 5'GT 44045334 Upstream 43bp
chr20 44045292 44045292 1 + C A HNSC 44045287 + 44045267 44045307 41 GGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTG GGGCCACCCTTCCTGCAGGCCCCATAAGGTGCAGAGCTGTG < 41bp 1 0.215758157163352 1 0.0321584939956665 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045287 chr20:44045292 stopgain 0.998 1 26 hm5C_associated_SNPs_24293 0 0 1 0 3 PIGT chr20:44045294 5'GT 44045294 Upstream 3bp
chr20 44045292 44045292 1 + C A HNSC 44045287 + 44045267 44045307 41 GGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTG GGGCCACCCTTCCTGCAGGCCCCATAAGGTGCAGAGCTGTG < 41bp 1 0.215758157163352 1 0.0321584939956665 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045287 chr20:44045292 stopgain 0.998 1 26 hm5C_associated_SNPs_24293 0 0 1 0 3 PIGT chr20:44045304 5'GT 44045304 Upstream 13bp
chr20 44045292 44045292 1 + C A HNSC 44045287 + 44045267 44045307 41 GGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTG GGGCCACCCTTCCTGCAGGCCCCATAAGGTGCAGAGCTGTG < 41bp 1 0.215758157163352 1 0.0321584939956665 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045287 chr20:44045292 stopgain 0.998 1 26 hm5C_associated_SNPs_24293 0 0 1 0 3 PIGT chr20:44045334 5'GT 44045334 Upstream 43bp
chr20 44045292 44045292 1 + C A HNSC 44045288 + 44045268 44045308 41 GGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTGG GGCCACCCTTCCTGCAGGCCCCATAAGGTGCAGAGCTGTGG < 41bp 1 0.401989921656558 1 0.0762265622615814 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045288 chr20:44045292 stopgain 0.998 1 25 hm5C_associated_SNPs_24294 0 0 1 0 3 PIGT chr20:44045294 5'GT 44045294 Upstream 3bp
chr20 44045292 44045292 1 + C A HNSC 44045288 + 44045268 44045308 41 GGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTGG GGCCACCCTTCCTGCAGGCCCCATAAGGTGCAGAGCTGTGG < 41bp 1 0.401989921656558 1 0.0762265622615814 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045288 chr20:44045292 stopgain 0.998 1 25 hm5C_associated_SNPs_24294 0 0 1 0 3 PIGT chr20:44045304 5'GT 44045304 Upstream 13bp
chr20 44045292 44045292 1 + C A HNSC 44045288 + 44045268 44045308 41 GGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTGG GGCCACCCTTCCTGCAGGCCCCATAAGGTGCAGAGCTGTGG < 41bp 1 0.401989921656558 1 0.0762265622615814 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045288 chr20:44045292 stopgain 0.998 1 25 hm5C_associated_SNPs_24294 0 0 1 0 3 PIGT chr20:44045334 5'GT 44045334 Upstream 43bp
chr20 44045292 44045292 1 + C A HNSC 44045289 + 44045269 44045309 41 GCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTGGG GCCACCCTTCCTGCAGGCCCCATAAGGTGCAGAGCTGTGGG < 41bp 1 0.621563072625691 1 0.169166475534439 experiment 0.756873854748618 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045289 chr20:44045292 stopgain 0.998 1 24 hm5C_associated_SNPs_24295 0 0 1 0 3 PIGT chr20:44045294 5'GT 44045294 Upstream 3bp
chr20 44045292 44045292 1 + C A HNSC 44045289 + 44045269 44045309 41 GCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTGGG GCCACCCTTCCTGCAGGCCCCATAAGGTGCAGAGCTGTGGG < 41bp 1 0.621563072625691 1 0.169166475534439 experiment 0.756873854748618 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045289 chr20:44045292 stopgain 0.998 1 24 hm5C_associated_SNPs_24295 0 0 1 0 3 PIGT chr20:44045304 5'GT 44045304 Upstream 13bp
chr20 44045292 44045292 1 + C A HNSC 44045289 + 44045269 44045309 41 GCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTGGG GCCACCCTTCCTGCAGGCCCCATAAGGTGCAGAGCTGTGGG < 41bp 1 0.621563072625691 1 0.169166475534439 experiment 0.756873854748618 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045289 chr20:44045292 stopgain 0.998 1 24 hm5C_associated_SNPs_24295 0 0 1 0 3 PIGT chr20:44045334 5'GT 44045334 Upstream 43bp
chr15 45353314 45353314 1 + C G HNSC 45353327 + 45353307 45353347 41 ATGAATTCTGCAAGATGGGCCGATACAATCTGTCACCTTCC ATGAATTGTGCAAGATGGGCCGATACAATCTGTCACCTTCC < 41bp 1 0.272655492778384 1 0.369756519794464 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SORD ENSG00000140263 CDS Human protein_coding chr15:45353327 chr15:45353314 nonsynonymous SNV 0.712 1 8 hm5C_associated_SNPs_24297 0 0 0 0 1 SORD chr15:45353265 3'AG 45353265 Downstream 50bp
chr3 13672897 13672897 1 + T C HNSC 13672900 + 13672880 13672920 41 TCAACGTGCCAGGGAGCTACCAGTGTGCATGCCCTGAGCAG TCAACGTGCCAGGGAGCCACCAGTGTGCATGCCCTGAGCAG < 41bp 1 0.514203587630527 1 0.285824537277222 experiment 0.971592824738947 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13672900 chr3:13672897 nonsynonymous SNV 0.997 4 18 hm5C_associated_SNPs_24298 0 0 0 0 1 FBLN2 chr3:13672829 3'AG 13672829 Downstream 69bp
chr19 3527705 3527705 1 + G A HNSC 3527693 + 3527673 3527713 41 CCAAGATCCCCTTCAAGGTGCTGGACGCGCCCGAGCTGCAG CCAAGATCCCCTTCAAGGTGCTGGACGCGCCCAAGCTGCAG < 41bp 1 0.721281771968874 1 0.28051096200943 experiment 0.557436456062251 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3527693 chr19:3527705 nonsynonymous SNV 0.702 2 33 hm5C_associated_SNPs_24300 0 0 0 0 1 FZR1 chr19:3527629 3'AG 3527629 Downstream 77bp
chr17 16342900 16342900 1 + G A HNSC 16342881 + 16342861 16342901 41 TAACTGACGACGTCTAATGTCTATCTGACCGCAGTCGCTGA TAACTGACGACGTCTAATGTCTATCTGACCGCAGTCGCTAA < 41bp 1 0.12949129927689 1 0.0657915771007538 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342881 chr17:16342900 . . 0 40 hm5C_associated_SNPs_24302 0 0 1 1 2 LRRC75A-AS1;SNORD49B chr17:16342842 3'AG 16342842 Downstream 59bp
chr17 16342900 16342900 1 + G A HNSC 16342881 + 16342861 16342901 41 TAACTGACGACGTCTAATGTCTATCTGACCGCAGTCGCTGA TAACTGACGACGTCTAATGTCTATCTGACCGCAGTCGCTAA < 41bp 1 0.12949129927689 1 0.0657915771007538 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342881 chr17:16342900 . . 0 40 hm5C_associated_SNPs_24302 0 0 1 1 2 LRRC75A-AS1 chr17:16342895 3'AG 16342895 Downstream 6bp
chr1 22332001 22332001 1 + C T HNSC 22331987 + 22331967 22332007 41 AGCTTCTACCACACGTGTGGCGGTAGCCTCATCGCCCCCGA AGCTTCTACCACACGTGTGGCGGTAGCCTCATCGTCCCCGA < 41bp 1 0.772376839848868 1 0.448389738798141 experiment 0.455246320302265 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331987 chr1:22332001 nonsynonymous SNV 0.031 1 35 hm5C_associated_SNPs_24303 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 62bp
chr1 22332001 22332001 1 + C T HNSC 22331987 + 22331967 22332007 41 AGCTTCTACCACACGTGTGGCGGTAGCCTCATCGCCCCCGA AGCTTCTACCACACGTGTGGCGGTAGCCTCATCGTCCCCGA < 41bp 1 0.772376839848868 1 0.448389738798141 experiment 0.455246320302265 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331987 chr1:22332001 nonsynonymous SNV 0.031 1 35 hm5C_associated_SNPs_24303 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 37bp
chr1 22332001 22332001 1 + C T HNSC 22331993 + 22331973 22332013 41 TACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGT TACCACACGTGTGGCGGTAGCCTCATCGTCCCCGATTGGGT < 41bp 1 0.308187163843368 1 0.0460287034511566 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331993 chr1:22332001 nonsynonymous SNV 0.031 1 29 hm5C_associated_SNPs_24304 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 62bp
chr1 22332001 22332001 1 + C T HNSC 22331993 + 22331973 22332013 41 TACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGT TACCACACGTGTGGCGGTAGCCTCATCGTCCCCGATTGGGT < 41bp 1 0.308187163843368 1 0.0460287034511566 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331993 chr1:22332001 nonsynonymous SNV 0.031 1 29 hm5C_associated_SNPs_24304 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 37bp
chr1 22332001 22332001 1 + C T HNSC 22331994 + 22331974 22332014 41 ACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTT ACCACACGTGTGGCGGTAGCCTCATCGTCCCCGATTGGGTT < 41bp 1 0.54347530484526 1 0.158221036195755 experiment 0.91304939030948 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331994 chr1:22332001 nonsynonymous SNV 0.031 1 28 hm5C_associated_SNPs_24305 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 62bp
chr1 22332001 22332001 1 + C T HNSC 22331994 + 22331974 22332014 41 ACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTT ACCACACGTGTGGCGGTAGCCTCATCGTCCCCGATTGGGTT < 41bp 1 0.54347530484526 1 0.158221036195755 experiment 0.91304939030948 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331994 chr1:22332001 nonsynonymous SNV 0.031 1 28 hm5C_associated_SNPs_24305 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 37bp
chr1 22332001 22332001 1 + C T HNSC 22331996 + 22331976 22332016 41 CACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGT CACACGTGTGGCGGTAGCCTCATCGTCCCCGATTGGGTTGT < 41bp 1 0.448054045336156 1 0.420783042907715 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331996 chr1:22332001 nonsynonymous SNV 0.031 1 26 hm5C_associated_SNPs_24306 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 62bp
chr1 22332001 22332001 1 + C T HNSC 22331996 + 22331976 22332016 41 CACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGT CACACGTGTGGCGGTAGCCTCATCGTCCCCGATTGGGTTGT < 41bp 1 0.448054045336156 1 0.420783042907715 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331996 chr1:22332001 nonsynonymous SNV 0.031 1 26 hm5C_associated_SNPs_24306 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 37bp
chr1 22332001 22332001 1 + C T HNSC 22331999 + 22331979 22332019 41 ACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGAC ACGTGTGGCGGTAGCCTCATCGTCCCCGATTGGGTTGTGAC < 41bp 1 0.219519317463496 1 0.250668346881866 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331999 chr1:22332001 nonsynonymous SNV 0.031 1 23 hm5C_associated_SNPs_24307 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 62bp
chr1 22332001 22332001 1 + C T HNSC 22331999 + 22331979 22332019 41 ACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGAC ACGTGTGGCGGTAGCCTCATCGTCCCCGATTGGGTTGTGAC < 41bp 1 0.219519317463496 1 0.250668346881866 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331999 chr1:22332001 nonsynonymous SNV 0.031 1 23 hm5C_associated_SNPs_24307 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 37bp
chr1 22332001 22332001 1 + C T HNSC 22332002 + 22331982 22332022 41 TGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGC TGTGGCGGTAGCCTCATCGTCCCCGATTGGGTTGTGACTGC < 41bp 1 0.648266591095246 1 0.809612810611725 experiment 0.703466817809509 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332002 chr1:22332001 nonsynonymous SNV 0.031 1 20 hm5C_associated_SNPs_24308 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 62bp
chr1 22332001 22332001 1 + C T HNSC 22332002 + 22331982 22332022 41 TGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGC TGTGGCGGTAGCCTCATCGTCCCCGATTGGGTTGTGACTGC < 41bp 1 0.648266591095246 1 0.809612810611725 experiment 0.703466817809509 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332002 chr1:22332001 nonsynonymous SNV 0.031 1 20 hm5C_associated_SNPs_24308 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 37bp
chr1 22332001 22332001 1 + C T HNSC 22332003 + 22331983 22332023 41 GTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCC GTGGCGGTAGCCTCATCGTCCCCGATTGGGTTGTGACTGCC < 41bp 1 0.755436714887844 1 0.178337574005127 experiment 0.489126570224311 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332003 chr1:22332001 nonsynonymous SNV 0.031 1 19 hm5C_associated_SNPs_24309 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 62bp
chr1 22332001 22332001 1 + C T HNSC 22332003 + 22331983 22332023 41 GTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCC GTGGCGGTAGCCTCATCGTCCCCGATTGGGTTGTGACTGCC < 41bp 1 0.755436714887844 1 0.178337574005127 experiment 0.489126570224311 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332003 chr1:22332001 nonsynonymous SNV 0.031 1 19 hm5C_associated_SNPs_24309 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 37bp
chr1 22332001 22332001 1 + C T HNSC 22332004 + 22331984 22332024 41 TGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCG TGGCGGTAGCCTCATCGTCCCCGATTGGGTTGTGACTGCCG < 41bp 1 0.247481825837827 1 0.0843959748744965 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332004 chr1:22332001 nonsynonymous SNV 0.031 1 18 hm5C_associated_SNPs_24310 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 62bp
chr1 22332001 22332001 1 + C T HNSC 22332004 + 22331984 22332024 41 TGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCG TGGCGGTAGCCTCATCGTCCCCGATTGGGTTGTGACTGCCG < 41bp 1 0.247481825837827 1 0.0843959748744965 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332004 chr1:22332001 nonsynonymous SNV 0.031 1 18 hm5C_associated_SNPs_24310 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 37bp
chr1 22332001 22332001 1 + C T HNSC 22332005 + 22331985 22332025 41 GGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGG GGCGGTAGCCTCATCGTCCCCGATTGGGTTGTGACTGCCGG < 41bp 1 0.436739355772814 1 0.302554965019226 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332005 chr1:22332001 nonsynonymous SNV 0.031 1 17 hm5C_associated_SNPs_24311 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 62bp
chr1 22332001 22332001 1 + C T HNSC 22332005 + 22331985 22332025 41 GGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGG GGCGGTAGCCTCATCGTCCCCGATTGGGTTGTGACTGCCGG < 41bp 1 0.436739355772814 1 0.302554965019226 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332005 chr1:22332001 nonsynonymous SNV 0.031 1 17 hm5C_associated_SNPs_24311 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 37bp
chr1 22332001 22332001 1 + C T HNSC 22332019 + 22331999 22332039 41 CGCCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGT CGTCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGT < 41bp 1 0.674600735392229 1 0.243885308504105 experiment 0.650798529215542 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332019 chr1:22332001 nonsynonymous SNV 0.031 1 3 hm5C_associated_SNPs_24312 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 62bp
chr1 22332001 22332001 1 + C T HNSC 22332019 + 22331999 22332039 41 CGCCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGT CGTCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGT < 41bp 1 0.674600735392229 1 0.243885308504105 experiment 0.650798529215542 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332019 chr1:22332001 nonsynonymous SNV 0.031 1 3 hm5C_associated_SNPs_24312 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 37bp
chr7 44741199 44741199 1 + G C HNSC 44741191 + 44741171 44741211 41 GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC GCGCCACCCCGAGGCCAGATCCAGCTTTCATGAGATGCTTC < 41bp 1 0.194802845474623 1 0.438447773456573 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44741191 chr7:44741199 nonsynonymous SNV 0.997 2 29 hm5C_associated_SNPs_24314 0 0 1 0 2 OGDH chr7:44741142 3'AG 44741142 Downstream 58bp
chr7 44741199 44741199 1 + G C HNSC 44741191 + 44741171 44741211 41 GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC GCGCCACCCCGAGGCCAGATCCAGCTTTCATGAGATGCTTC < 41bp 1 0.194802845474623 1 0.438447773456573 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44741191 chr7:44741199 nonsynonymous SNV 0.997 2 29 hm5C_associated_SNPs_24314 0 0 1 0 2 OGDH chr7:44741214 5'GT 44741214 Upstream 16bp
chr19 40704301 40704301 1 + C T HNSC 40704290 + 40704270 40704310 41 CCCACCCCACAGTCCTGATCCTGGAGGCCATCGAGAACCAC CCCACCCCACAGTCCTGATCCTGGAGGCCATTGAGAACCAC < 41bp 1 0.76339126908885 1 0.742097735404968 experiment 0.473217461822299 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40704290 chr19:40704301 synonymous SNV . 0 32 hm5C_associated_SNPs_24315 0 0 0 0 1 MAP3K10 chr19:40704282 3'AG 40704282 Downstream 20bp
chr19 40704301 40704301 1 + C T HNSC 40704298 + 40704278 40704318 41 ACAGTCCTGATCCTGGAGGCCATCGAGAACCACAACCTCGC ACAGTCCTGATCCTGGAGGCCATTGAGAACCACAACCTCGC < 41bp 1 0.0676197615891127 1 0.0521954298019409 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40704298 chr19:40704301 synonymous SNV . 0 24 hm5C_associated_SNPs_24316 0 0 0 0 1 MAP3K10 chr19:40704282 3'AG 40704282 Downstream 20bp
chrX 129063382 129063382 1 + C T HNSC 129063370 + 129063350 129063390 41 ATTTGAAAGGACCATCCAGACCCCCATAGGATCCACATGGA ATTTGAAAGGACCATCCAGACCCCCATAGGATTCACATGGA < 41bp 1 0.357818687412989 1 0.0986251831054688 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UTP14A ENSG00000156697 CDS Human protein_coding chrX:129063370 chrX:129063382 nonsynonymous SNV 0.989 0 33 hm5C_associated_SNPs_24317 0 0 0 0 1 UTP14A chrX:129063312 3'AG 129063312 Downstream 71bp
chr18 13067879 13067879 1 + G A HNSC 13067893 + 13067873 13067913 41 CTTATGGAGGCTGGAAAGCCCTCCCACTAAAATTGATAAAC CTTATGAAGGCTGGAAAGCCCTCCCACTAAAATTGATAAAC < 41bp 1 0.309427463400998 1 0.412310183048248 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13067893 chr18:13067879 nonsynonymous SNV 0.938 2 7 hm5C_associated_SNPs_24318 0 0 1 0 2 CEP192 chr18:13067830 3'AG 13067830 Downstream 50bp
chr18 13067879 13067879 1 + G A HNSC 13067893 + 13067873 13067913 41 CTTATGGAGGCTGGAAAGCCCTCCCACTAAAATTGATAAAC CTTATGAAGGCTGGAAAGCCCTCCCACTAAAATTGATAAAC < 41bp 1 0.309427463400998 1 0.412310183048248 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13067893 chr18:13067879 nonsynonymous SNV 0.938 2 7 hm5C_associated_SNPs_24318 0 0 1 0 2 CEP192 chr18:13067955 5'GT 13067955 Upstream 77bp
chr8 22106602 22106602 1 + C T HNSC 22106604 + 22106584 22106624 41 AAGAGGCCAAGATGAAGGCTCCTCCCAAAGCAGCCAGGAAG AAGAGGCCAAGATGAAGGTTCCTCCCAAAGCAGCCAGGAAG < 41bp 1 0.0177433188125345 1 0.0435902774333954 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POLR3D ENSG00000168495 CDS Human protein_coding chr8:22106604 chr8:22106602 nonsynonymous SNV 0.990 0 19 hm5C_associated_SNPs_24319 0 0 1 0 1 POLR3D chr8:22106557 3'AG 22106557 Downstream 46bp
chr2 38908571 38908571 1 + C T HNSC 38908580 + 38908560 38908600 41 AGAGCACAAGCCAGTCAGGCCACACCAGTCAACCTGACCAA AGAGCACAAGCTAGTCAGGCCACACCAGTCAACCTGACCAA < 41bp 1 0.218710013478068 1 0.0790366232395172 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GALM ENSG00000143891 CDS Human protein_coding chr2:38908580 chr2:38908571 synonymous SNV . 0 12 hm5C_associated_SNPs_24321 0 0 1 0 1 GALM chr2:38908628 5'GT 38908628 Upstream 58bp
chr14 104638927 104638927 1 + G A HNSC 104638925 + 104638905 104638945 41 CCCCTAGGCCGAAGTCTGCTCGGGGACCGTGGCCGACGTGC CCCCTAGGCCGAAGTCTGCTCGAGGACCGTGGCCGACGTGC < 41bp 1 0.603730180679043 1 0.881359994411469 experiment 0.792539638641913 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104638925 chr14:104638927 nonsynonymous SNV 0.949 3 23 hm5C_associated_SNPs_24322 0 0 0 0 2 KIF26A chr14:104638912 3'AG 104638912 Downstream 16bp
chr14 104638927 104638927 1 + G A HNSC 104638925 + 104638905 104638945 41 CCCCTAGGCCGAAGTCTGCTCGGGGACCGTGGCCGACGTGC CCCCTAGGCCGAAGTCTGCTCGAGGACCGTGGCCGACGTGC < 41bp 1 0.603730180679043 1 0.881359994411469 experiment 0.792539638641913 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104638925 chr14:104638927 nonsynonymous SNV 0.949 3 23 hm5C_associated_SNPs_24322 0 0 0 0 2 KIF26A chr14:104639005 5'GT 104639005 Upstream 79bp
chr1 154248134 154248134 1 + C T HNSC 154248129 + 154248109 154248149 41 CCTCCAGCCCTGGATGATGCCTTTTCCATCCTGGACTTATT CCTCCAGCCCTGGATGATGCCTTTTTCATCCTGGACTTATT < 41bp 1 0.116770599204213 1 0.0346508920192719 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HAX1 ENSG00000143575 CDS Human protein_coding chr1:154248129 chr1:154248134 nonsynonymous SNV 0.999 4 26 hm5C_associated_SNPs_24323 0 0 1 0 1 HAX1 chr1:154248092 3'AG 154248092 Downstream 43bp
chrX 70514363 70514363 1 + C T HNSC 70514364 + 70514344 70514384 41 GACAGATGCAGTGAAGGCTCCTTCCTGCTAACCACGTAAGT GACAGATGCAGTGAAGGCTTCTTCCTGCTAACCACGTAAGT < 41bp 1 0.124820577629806 1 0.222309350967407 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70514364 chrX:70514363 nonsynonymous SNV 0.998 1 20 hm5C_associated_SNPs_24324 0 0 1 0 1 NONO chrX:70514378 5'GT 70514378 Upstream 16bp
chr2 32824950 32824950 1 + C T HNSC 32824931 + 32824911 32824951 41 GAGACAACTGGTGGTCATAGCGTGCGATTCAATCCAAACCT GAGACAACTGGTGGTCATAGCGTGCGATTCAATCCAAACTT < 41bp 1 0.121829968329964 1 0.601558148860931 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32824931 chr2:32824950 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_24325 0 0 1 0 1 BIRC6 chr2:32824967 5'GT 32824967 Upstream 18bp
chr1 983443 983443 1 + G A HNSC 983446 + 983426 983466 41 AGGAGCCATTGCTGCGGGAGCCACGGCCAGAGCCACCACTG AGGAGCCATTGCTGCGGAAGCCACGGCCAGAGCCACCACTG < 41bp 1 0.27067207118303 1 0.280228912830353 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:983446 chr1:983443 nonsynonymous SNV 0.006 0 18 hm5C_associated_SNPs_24326 0 0 1 0 1 AGRN chr1:983392 3'AG 983392 Downstream 52bp
chr7 106826888 106826888 1 + C G HNSC 106826904 + 106826884 106826924 41 TGGCCTTCAACTGTCTGGCACTGTTTTTTGAAAGGTAAAAC TGGCGTTCAACTGTCTGGCACTGTTTTTTGAAAGGTAAAAC < 41bp 1 0.120445298507976 1 0.0270611345767975 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HBP1 ENSG00000105856 CDS Human protein_coding chr7:106826904 chr7:106826888 nonsynonymous SNV 0.995 5 5 hm5C_associated_SNPs_24327 0 0 1 0 2 HBP1 chr7:106826806 3'AG 106826806 Downstream 83bp
chr7 106826888 106826888 1 + C G HNSC 106826904 + 106826884 106826924 41 TGGCCTTCAACTGTCTGGCACTGTTTTTTGAAAGGTAAAAC TGGCGTTCAACTGTCTGGCACTGTTTTTTGAAAGGTAAAAC < 41bp 1 0.120445298507976 1 0.0270611345767975 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HBP1 ENSG00000105856 CDS Human protein_coding chr7:106826904 chr7:106826888 nonsynonymous SNV 0.995 5 5 hm5C_associated_SNPs_24327 0 0 1 0 2 HBP1 chr7:106826917 5'GT 106826917 Upstream 30bp
chr4 128811293 128811293 1 + C T HNSC 128811297 + 128811277 128811317 41 GACTAGGGGTATGGAGCCACCATGGGGTTATCAGAATCGTA GACTAGGGGTATGGAGTCACCATGGGGTTATCAGAATCGTA < 41bp 1 0.714079411360447 1 0.256567001342773 experiment 0.571841177279107 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLK4 ENSG00000142731 CDS Human protein_coding chr4:128811297 chr4:128811293 nonsynonymous SNV 0.397 0 17 hm5C_associated_SNPs_24328 0 0 1 0 1 PLK4 chr4:128811391 5'GT 128811391 Upstream 99bp
chr8 145139721 145139721 1 + C T HNSC 145139712 + 145139692 145139732 41 TACTTGCTCCCCGGCCTCTCCCGCTTCGTCTCCATCGGCCT TACTTGCTCCCCGGCCTCTCCCGCTTCGTTTCCATCGGCCT < 41bp 1 0.229002328263402 1 0.225277185440063 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139712 chr8:145139721 synonymous SNV . 0 30 hm5C_associated_SNPs_24329 0 0 1 0 1 GPAA1 chr8:145139625 3'AG 145139625 Downstream 97bp
chr18 13067878 13067878 1 + G A HNSC 13067893 + 13067873 13067913 41 CTTATGGAGGCTGGAAAGCCCTCCCACTAAAATTGATAAAC CTTATAGAGGCTGGAAAGCCCTCCCACTAAAATTGATAAAC < 41bp 1 0.280402888347686 1 0.487709075212479 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13067893 chr18:13067878 nonsynonymous SNV 0.931 4 6 hm5C_associated_SNPs_24331 0 0 1 0 2 CEP192 chr18:13067830 3'AG 13067830 Downstream 49bp
chr18 13067878 13067878 1 + G A HNSC 13067893 + 13067873 13067913 41 CTTATGGAGGCTGGAAAGCCCTCCCACTAAAATTGATAAAC CTTATAGAGGCTGGAAAGCCCTCCCACTAAAATTGATAAAC < 41bp 1 0.280402888347686 1 0.487709075212479 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13067893 chr18:13067878 nonsynonymous SNV 0.931 4 6 hm5C_associated_SNPs_24331 0 0 1 0 2 CEP192 chr18:13067955 5'GT 13067955 Upstream 78bp
chr11 118498114 118498114 1 + C T HNSC 118498128 + 118498108 118498148 41 TGAGCTCTATTGAGAAGGACCTGCAAGAGATCATGGACTCA TGAGCTTTATTGAGAAGGACCTGCAAGAGATCATGGACTCA < 41bp 1 0.5338785825617 1 0.181615203619003 experiment 0.9322428348766 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118498128 chr11:118498114 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_24332 0 0 1 0 1 PHLDB1 chr11:118498024 3'AG 118498024 Downstream 91bp
chr6 160496887 160496887 1 + C T HNSC 160496884 + 160496864 160496904 41 TCGCTCTTTGTTTAGGATATCGGCCGGGTAGCAGGACCACC TCGCTCTTTGTTTAGGATATCGGTCGGGTAGCAGGACCACC < 41bp 1 0.0617898149970427 1 0.503226816654205 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160496884 chr6:160496887 synonymous SNV . 0 24 hm5C_associated_SNPs_24333 0 0 1 0 1 IGF2R chr6:160496879 3'AG 160496879 Downstream 9bp
chr4 128811294 128811294 1 + C T HNSC 128811293 + 128811273 128811313 41 GCAAGACTAGGGGTATGGAGCCACCATGGGGTTATCAGAAT GCAAGACTAGGGGTATGGAGCTACCATGGGGTTATCAGAAT < 41bp 1 0.408223851033707 1 0.205216497182846 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLK4 ENSG00000142731 CDS Human protein_coding chr4:128811293 chr4:128811294 nonsynonymous SNV 0.342 0 22 hm5C_associated_SNPs_24334 0 0 1 0 1 PLK4 chr4:128811391 5'GT 128811391 Upstream 98bp
chr4 128811294 128811294 1 + C T HNSC 128811297 + 128811277 128811317 41 GACTAGGGGTATGGAGCCACCATGGGGTTATCAGAATCGTA GACTAGGGGTATGGAGCTACCATGGGGTTATCAGAATCGTA < 41bp 1 0.754376983837124 1 0.289064228534698 experiment 0.491246032325753 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLK4 ENSG00000142731 CDS Human protein_coding chr4:128811297 chr4:128811294 nonsynonymous SNV 0.342 0 18 hm5C_associated_SNPs_24335 0 0 1 0 1 PLK4 chr4:128811391 5'GT 128811391 Upstream 98bp
chrX 153641566 153641566 1 + C T HNSC 153641548 + 153641528 153641568 41 CTTTCCTGTCCTCTAGGGATCCTGAAACTCCGCCACATCTG CTTTCCTGTCCTCTAGGGATCCTGAAACTCCGCCACATTTG < 41bp 1 0.305460261229619 1 0.111875504255295 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAZ ENSG00000102125 CDS Human protein_coding chrX:153641548 chrX:153641566 synonymous SNV . 0 39 hm5C_associated_SNPs_24336 0 0 1 0 2 TAZ chrX:153641544 3'AG 153641544 Downstream 23bp
chrX 153641566 153641566 1 + C T HNSC 153641548 + 153641528 153641568 41 CTTTCCTGTCCTCTAGGGATCCTGAAACTCCGCCACATCTG CTTTCCTGTCCTCTAGGGATCCTGAAACTCCGCCACATTTG < 41bp 1 0.305460261229619 1 0.111875504255295 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAZ ENSG00000102125 CDS Human protein_coding chrX:153641548 chrX:153641566 synonymous SNV . 0 39 hm5C_associated_SNPs_24336 0 0 1 0 2 TAZ chrX:153641589 5'GT 153641589 Upstream 24bp
chr17 66251959 66251959 1 + C T HNSC 66251944 + 66251924 66251964 41 GGAAGAAGCTGACCGGCGCCCTCTAAACCTTTGCCCTATCT GGAAGAAGCTGACCGGCGCCCTCTAAACCTTTGCCTTATCT < 41bp 1 0.625663378431275 1 0.779043674468994 experiment 0.748673243137451 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control AMZ2 ENSG00000196704 CDS Human protein_coding chr17:66251944 chr17:66251959 nonsynonymous SNV 0.997 3 36 hm5C_associated_SNPs_24337 0 0 0 0 1 AMZ2 chr17:66252017 5'GT 66252017 Upstream 59bp
chr19 803562 803562 1 + G A HNSC 803568 + 803548 803588 41 CCTTCTCTTGCAGCGGGGATCTGACGAGCTTTTCTCTACTT CCTTCTCTTGCAGCAGGGATCTGACGAGCTTTTCTCTACTT < 41bp 1 0.402370165725258 1 0.268792748451233 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:803568 chr19:803562 nonsynonymous SNV 0.990 2 15 hm5C_associated_SNPs_24339 0 0 1 0 2 PTBP1 chr19:803561 3'AG 803561 Downstream 2bp
chr19 803562 803562 1 + G A HNSC 803568 + 803548 803588 41 CCTTCTCTTGCAGCGGGGATCTGACGAGCTTTTCTCTACTT CCTTCTCTTGCAGCAGGGATCTGACGAGCTTTTCTCTACTT < 41bp 1 0.402370165725258 1 0.268792748451233 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:803568 chr19:803562 nonsynonymous SNV 0.990 2 15 hm5C_associated_SNPs_24339 0 0 1 0 2 PTBP1 chr19:803636 5'GT 803636 Upstream 75bp
chr19 58758137 58758137 1 + G A HNSC 58758154 + 58758134 58758174 41 GCAGGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCT GCAAGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCT < 41bp 1 0.461499027110045 1 0.460327297449112 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human other chr19:58758154 chr19:58758137 nonsynonymous SNV 0.003 0 4 hm5C_associated_SNPs_24340 0 0 1 0 3 ZNF544 chr19:58758077 3'AG 58758077 Downstream 61bp
chr19 58758137 58758137 1 + G A HNSC 58758154 + 58758134 58758174 41 GCAGGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCT GCAAGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCT < 41bp 1 0.461499027110045 1 0.460327297449112 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58758154 chr19:58758137 nonsynonymous SNV 0.003 0 4 hm5C_associated_SNPs_24340 0 0 1 0 3 ZNF544 chr19:58758112 3'AG 58758112 Downstream 26bp
chr19 58758137 58758137 1 + G A HNSC 58758154 + 58758134 58758174 41 GCAGGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCT GCAAGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCT < 41bp 1 0.461499027110045 1 0.460327297449112 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58758154 chr19:58758137 nonsynonymous SNV 0.003 0 4 hm5C_associated_SNPs_24340 0 0 1 0 3 ZNF544 chr19:58758160 5'GT 58758160 Upstream 24bp
chr19 58758137 58758137 1 + G A HNSC 58758156 + 58758136 58758176 41 AGGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCTTG AAGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCTTG < 41bp 1 0.58072024703016 1 0.79943311214447 experiment 0.838559505939679 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human other chr19:58758156 chr19:58758137 nonsynonymous SNV 0.003 0 2 hm5C_associated_SNPs_24341 0 0 1 0 3 ZNF544 chr19:58758077 3'AG 58758077 Downstream 61bp
chr19 58758137 58758137 1 + G A HNSC 58758156 + 58758136 58758176 41 AGGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCTTG AAGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCTTG < 41bp 1 0.58072024703016 1 0.79943311214447 experiment 0.838559505939679 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58758156 chr19:58758137 nonsynonymous SNV 0.003 0 2 hm5C_associated_SNPs_24341 0 0 1 0 3 ZNF544 chr19:58758112 3'AG 58758112 Downstream 26bp
chr19 58758137 58758137 1 + G A HNSC 58758156 + 58758136 58758176 41 AGGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCTTG AAGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCTTG < 41bp 1 0.58072024703016 1 0.79943311214447 experiment 0.838559505939679 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58758156 chr19:58758137 nonsynonymous SNV 0.003 0 2 hm5C_associated_SNPs_24341 0 0 1 0 3 ZNF544 chr19:58758160 5'GT 58758160 Upstream 24bp
chr15 91448716 91448716 1 + G A HNSC 91448697 + 91448677 91448717 41 CCATCTCCCCGCAGGACTGCCAGTTTGCTTTGGGGGGCCGG CCATCTCCCCGCAGGACTGCCAGTTTGCTTTGGGGGGCCAG < 41bp 1 0.262246930819251 1 0.214571356773376 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91448697 chr15:91448716 nonsynonymous SNV 0.992 0 40 hm5C_associated_SNPs_24342 0 0 1 0 1 MAN2A2 chr15:91448738 5'GT 91448738 Upstream 23bp
chr19 58758138 58758138 1 + G A HNSC 58758154 + 58758134 58758174 41 GCAGGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCT GCAGAGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCT < 41bp 1 0.471011884420132 1 0.424341857433319 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human other chr19:58758154 chr19:58758138 nonsynonymous SNV 0.002 0 5 hm5C_associated_SNPs_24343 0 0 1 0 3 ZNF544 chr19:58758077 3'AG 58758077 Downstream 62bp
chr19 58758138 58758138 1 + G A HNSC 58758154 + 58758134 58758174 41 GCAGGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCT GCAGAGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCT < 41bp 1 0.471011884420132 1 0.424341857433319 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58758154 chr19:58758138 nonsynonymous SNV 0.002 0 5 hm5C_associated_SNPs_24343 0 0 1 0 3 ZNF544 chr19:58758112 3'AG 58758112 Downstream 27bp
chr19 58758138 58758138 1 + G A HNSC 58758154 + 58758134 58758174 41 GCAGGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCT GCAGAGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCT < 41bp 1 0.471011884420132 1 0.424341857433319 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58758154 chr19:58758138 nonsynonymous SNV 0.002 0 5 hm5C_associated_SNPs_24343 0 0 1 0 3 ZNF544 chr19:58758160 5'GT 58758160 Upstream 23bp
chr19 58758138 58758138 1 + G A HNSC 58758156 + 58758136 58758176 41 AGGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCTTG AGAGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCTTG < 41bp 1 0.588384803124236 1 0.776582837104797 experiment 0.823230393751529 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human other chr19:58758156 chr19:58758138 nonsynonymous SNV 0.002 0 3 hm5C_associated_SNPs_24344 0 0 1 0 3 ZNF544 chr19:58758077 3'AG 58758077 Downstream 62bp
chr19 58758138 58758138 1 + G A HNSC 58758156 + 58758136 58758176 41 AGGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCTTG AGAGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCTTG < 41bp 1 0.588384803124236 1 0.776582837104797 experiment 0.823230393751529 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58758156 chr19:58758138 nonsynonymous SNV 0.002 0 3 hm5C_associated_SNPs_24344 0 0 1 0 3 ZNF544 chr19:58758112 3'AG 58758112 Downstream 27bp
chr19 58758138 58758138 1 + G A HNSC 58758156 + 58758136 58758176 41 AGGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCTTG AGAGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCTTG < 41bp 1 0.588384803124236 1 0.776582837104797 experiment 0.823230393751529 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58758156 chr19:58758138 nonsynonymous SNV 0.002 0 3 hm5C_associated_SNPs_24344 0 0 1 0 3 ZNF544 chr19:58758160 5'GT 58758160 Upstream 23bp
chr20 42271216 42271216 1 + C T HNSC 42271196 + 42271176 42271216 41 CCAGTAAACTACCAAAGGACCAACAGGATGCCAAACATATC CCAGTAAACTACCAAAGGACCAACAGGATGCCAAACATATT < 41bp 1 0.44740296195893 1 0.216137796640396 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IFT52 ENSG00000101052 CDS Human protein_coding chr20:42271196 chr20:42271216 synonymous SNV . 0 41 hm5C_associated_SNPs_24345 0 0 1 3 2 IFT52 chr20:42271119 3'AG 42271119 Downstream 98bp
chr20 42271216 42271216 1 + C T HNSC 42271196 + 42271176 42271216 41 CCAGTAAACTACCAAAGGACCAACAGGATGCCAAACATATC CCAGTAAACTACCAAAGGACCAACAGGATGCCAAACATATT < 41bp 1 0.44740296195893 1 0.216137796640396 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IFT52 ENSG00000101052 CDS Human protein_coding chr20:42271196 chr20:42271216 synonymous SNV . 0 41 hm5C_associated_SNPs_24345 0 0 1 3 2 IFT52 chr20:42271264 5'GT 42271264 Upstream 49bp
chr22 18979447 18979447 1 + G T HNSC 18979435 + 18979415 18979455 41 AGGCCCGTCCTGGTGGAGTTCACCCTGCTGGAGATGGAGAA AGGCCCGTCCTGGTGGAGTTCACCCTGCTGGATATGGAGAA < 41bp 1 0.270509545403557 1 0.128181636333466 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979435 chr22:18979447 . . 0 33 hm5C_associated_SNPs_24346 0 0 1 0 1 DGCR5 chr22:18979530 5'GT 18979530 Upstream 84bp
chr22 18979447 18979447 1 + G T HNSC 18979466 + 18979446 18979486 41 AGATGGAGAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAAC ATATGGAGAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAAC < 41bp 1 0.122442272736166 1 0.0580072999000549 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979466 chr22:18979447 . . 0 2 hm5C_associated_SNPs_24347 0 0 1 0 1 DGCR5 chr22:18979530 5'GT 18979530 Upstream 84bp
chr4 169630280 169630280 1 + C A HNSC 169630296 + 169630276 169630316 41 TGCCCAGCTGGTTGTCACCTCAGGTATGTGAGGAGTAAAAA TGCCAAGCTGGTTGTCACCTCAGGTATGTGAGGAGTAAAAA < 41bp 1 0.423650728559155 1 0.776170790195465 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PALLD ENSG00000129116 CDS Human protein_coding chr4:169630296 chr4:169630280 nonsynonymous SNV 0.878 0 5 hm5C_associated_SNPs_24348 0 0 0 0 1 PALLD chr4:169630298 5'GT 169630298 Upstream 19bp
chr15 66777514 66777514 1 + G A HNSC 66777521 + 66777501 66777541 41 GCCAAGGACCCCCGGGAGGCCCCTTAGCTGTGAGTAGCCTG GCCAAGGACCCCCAGGAGGCCCCTTAGCTGTGAGTAGCCTG < 41bp 1 0.128734125469579 1 0.0778791010379791 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP2K1 ENSG00000169032 CDS Human protein_coding chr15:66777521 chr15:66777514 nonsynonymous SNV 0.864 1 14 hm5C_associated_SNPs_24351 0 0 1 0 1 MAP2K1 chr15:66777529 5'GT 66777529 Upstream 16bp
chr6 90331648 90331648 1 + G T HNSC 90331647 + 90331627 90331667 41 TTTGCCTCCTTCAGGTCTTGCGCTTCAGTCGTGGGCGAAGC TTTGCCTCCTTCAGGTCTTGCTCTTCAGTCGTGGGCGAAGC < 41bp 1 0.127858443490624 1 0.0506463646888733 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKRD6 ENSG00000083099;ENSG00000135299 CDS Human other chr6:90331647 chr6:90331648 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_24355 0 0 0 0 2 ANKRD6 chr6:90331641 3'AG 90331641 Downstream 8bp
chr6 90331648 90331648 1 + G T HNSC 90331647 + 90331627 90331667 41 TTTGCCTCCTTCAGGTCTTGCGCTTCAGTCGTGGGCGAAGC TTTGCCTCCTTCAGGTCTTGCTCTTCAGTCGTGGGCGAAGC < 41bp 1 0.127858443490624 1 0.0506463646888733 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKRD6 ENSG00000083099;ENSG00000135299 CDS Human protein_coding chr6:90331647 chr6:90331648 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_24355 0 0 0 0 2 ANKRD6 chr6:90331745 5'GT 90331745 Upstream 98bp
chr4 128748493 128748493 1 + G C HNSC 128748508 + 128748488 128748528 41 ACATGGAGCATGAAGAGAGACCAAAAGCCTTAAATGACTTG ACATGCAGCATGAAGAGAGACCAAAAGCCTTAAATGACTTG < 41bp 1 0.280430238560854 1 0.143199682235718 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4L ENSG00000164070 CDS Human protein_coding chr4:128748508 chr4:128748493 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_24356 0 0 0 0 2 HSPA4L chr4:128748460 3'AG 128748460 Downstream 34bp
chr4 128748493 128748493 1 + G C HNSC 128748508 + 128748488 128748528 41 ACATGGAGCATGAAGAGAGACCAAAAGCCTTAAATGACTTG ACATGCAGCATGAAGAGAGACCAAAAGCCTTAAATGACTTG < 41bp 1 0.280430238560854 1 0.143199682235718 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4L ENSG00000164070 CDS Human protein_coding chr4:128748508 chr4:128748493 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_24356 0 0 0 0 2 HSPA4L chr4:128748579 5'GT 128748579 Upstream 87bp
chr15 89015921 89015921 1 + G A HNSC 89015924 + 89015904 89015944 41 GGAAAGAAATTTGAGGAGATCCCAATTGCACACATTAAAGC GGAAAGAAATTTGAGGAAATCCCAATTGCACACATTAAAGC < 41bp 1 0.635541078160519 1 0.29617315530777 experiment 0.728917843678963 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MRPS11 ENSG00000181991 CDS Human protein_coding chr15:89015924 chr15:89015921 synonymous SNV . 0 18 hm5C_associated_SNPs_24357 0 0 1 0 2 MRPS11 chr15:89015858 3'AG 89015858 Downstream 64bp
chr15 89015921 89015921 1 + G A HNSC 89015924 + 89015904 89015944 41 GGAAAGAAATTTGAGGAGATCCCAATTGCACACATTAAAGC GGAAAGAAATTTGAGGAAATCCCAATTGCACACATTAAAGC < 41bp 1 0.635541078160519 1 0.29617315530777 experiment 0.728917843678963 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MRPS11 ENSG00000181991 CDS Human protein_coding chr15:89015924 chr15:89015921 synonymous SNV . 0 18 hm5C_associated_SNPs_24357 0 0 1 0 2 MRPS11 chr15:89015956 5'GT 89015956 Upstream 36bp
chr14 64990072 64990072 1 + G C HNSC 64990092 + 64990072 64990112 41 GAGAGCGTCAGTTGCGACTGCACAATGATATGCACAAAGGC CAGAGCGTCAGTTGCGACTGCACAATGATATGCACAAAGGC < 41bp 1 0.610394214981883 1 0.55030483007431 experiment 0.779211570036234 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZBTB1 ENSG00000126804 CDS Human protein_coding chr14:64990092 chr14:64990072 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_24358 0 0 1 0 1 ZBTB1 chr14:64990120 5'GT 64990120 Upstream 49bp
chr14 103390078 103390078 1 + T G HNSC 103390064 + 103390044 103390084 41 CCAGCACTGACCCAGGCGGTCTCCAAACTCTGGGTCCCCAA CCAGCACTGACCCAGGCGGTCTCCAAACTCTGGGGCCCCAA < 41bp 1 0.675002988883155 1 0.833601713180542 experiment 0.64999402223369 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control AMN ENSG00000166126 CDS Human protein_coding chr14:103390064 chr14:103390078 nonsynonymous SNV 0.950 4 35 hm5C_associated_SNPs_24359 0 0 1 0 2 AMN chr14:103390048 3'AG 103390048 Downstream 31bp
chr14 103390078 103390078 1 + T G HNSC 103390064 + 103390044 103390084 41 CCAGCACTGACCCAGGCGGTCTCCAAACTCTGGGTCCCCAA CCAGCACTGACCCAGGCGGTCTCCAAACTCTGGGGCCCCAA < 41bp 1 0.675002988883155 1 0.833601713180542 experiment 0.64999402223369 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control AMN ENSG00000166126 CDS Human protein_coding chr14:103390064 chr14:103390078 nonsynonymous SNV 0.950 4 35 hm5C_associated_SNPs_24359 0 0 1 0 2 AMN chr14:103390166 5'GT 103390166 Upstream 89bp
chr10 102114253 102114253 1 + C A HNSC 102114241 + 102114221 102114261 41 ACCACAAGTTTTCAGAAACACATGCTGATCCTCATAATTCC ACCACAAGTTTTCAGAAACACATGCTGATCCTAATAATTCC < 41bp 1 0.27708902614274 1 0.0934436619281769 experiment 1 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control SCD ENSG00000099194 CDS Human protein_coding chr10:102114241 chr10:102114253 nonsynonymous SNV 0.846 4 33 hm5C_associated_SNPs_24360 0 0 1 0 1 SCD chr10:102114184 3'AG 102114184 Downstream 70bp
chr22 40697290 40697290 1 + G A HNSC 40697295 + 40697275 40697315 41 ACGCATTGAATGTGGGGCTCCCAGACCTTCAAACCAAAGGG ACGCATTGAATGTGGAGCTCCCAGACCTTCAAACCAAAGGG < 41bp 1 0.188098698826385 1 0.357047021389008 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40697295 chr22:40697290 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_24361 0 0 1 0 1 TNRC6B chr22:40697337 5'GT 40697337 Upstream 48bp
chr4 56291574 56291574 1 + G A HNSC 56291562 + 56291542 56291582 41 GTGACAATCATAGGAGGCATCGTTTTTTTGGCGTTTGCATT GTGACAATCATAGGAGGCATCGTTTTTTTGGCATTTGCATT < 41bp 1 0.101865719702438 1 0.0917621850967407 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TMEM165 ENSG00000134851 CDS Human protein_coding chr4:56291562 chr4:56291574 synonymous SNV . 0 33 hm5C_associated_SNPs_24363 0 0 1 0 1 TMEM165 chr4:56291543 3'AG 56291543 Downstream 32bp
chr19 41509997 41509997 1 + T C HNSC 41510016 + 41509996 41510036 41 CTTGTGGACAAGGCTGAGGCCTTCTCTGGCCGGGGAAAAAT CCTGTGGACAAGGCTGAGGCCTTCTCTGGCCGGGGAAAAAT < 41bp 1 0.221734252743118 1 0.0773138701915741 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41510016 chr19:41509997 nonsynonymous SNV 0.967 4 2 hm5C_associated_SNPs_24364 0 0 0 0 2 CYP2B6 chr19:41509906 3'AG 41509906 Downstream 92bp
chr19 41509997 41509997 1 + T C HNSC 41510016 + 41509996 41510036 41 CTTGTGGACAAGGCTGAGGCCTTCTCTGGCCGGGGAAAAAT CCTGTGGACAAGGCTGAGGCCTTCTCTGGCCGGGGAAAAAT < 41bp 1 0.221734252743118 1 0.0773138701915741 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41510016 chr19:41509997 nonsynonymous SNV 0.967 4 2 hm5C_associated_SNPs_24364 0 0 0 0 2 CYP2B6 chr19:41510068 5'GT 41510068 Upstream 72bp
chr6 42986153 42986153 1 + C T HNSC 42986152 + 42986132 42986172 41 CACATGTATGTCTTTGGGGGCCGTGCCGACCGCTTTGGGCC CACATGTATGTCTTTGGGGGCTGTGCCGACCGCTTTGGGCC < 41bp 1 0.216270571696332 1 0.175445139408112 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHDC3 ENSG00000124702 CDS Human protein_coding chr6:42986152 chr6:42986153 nonsynonymous SNV 0.975 4 22 hm5C_associated_SNPs_24365 0 0 1 0 2 KLHDC3 chr6:42986081 3'AG 42986081 Downstream 73bp
chr6 42986153 42986153 1 + C T HNSC 42986152 + 42986132 42986172 41 CACATGTATGTCTTTGGGGGCCGTGCCGACCGCTTTGGGCC CACATGTATGTCTTTGGGGGCTGTGCCGACCGCTTTGGGCC < 41bp 1 0.216270571696332 1 0.175445139408112 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHDC3 ENSG00000124702 CDS Human protein_coding chr6:42986152 chr6:42986153 nonsynonymous SNV 0.975 4 22 hm5C_associated_SNPs_24365 0 0 1 0 2 KLHDC3 chr6:42986086 3'AG 42986086 Downstream 68bp
chr2 97007517 97007517 1 + G A HNSC 97007527 + 97007507 97007547 41 CCCAGTCCTCGAAGACTTTCCTCAGAATGACGATGAGAAGG CCCAGTCCTCAAAGACTTTCCTCAGAATGACGATGAGAAGG < 41bp 1 0.555113394565382 1 0.277774155139923 experiment 0.889773210869236 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCAPH ENSG00000121152 CDS Human protein_coding chr2:97007527 chr2:97007517 nonsynonymous SNV 0.987 0 11 hm5C_associated_SNPs_24366 0 0 1 0 1 NCAPH chr2:97007452 3'AG 97007452 Downstream 66bp
chr12 62785134 62785134 1 + G C HNSC 62785130 + 62785110 62785150 41 TTTACATTCCAGTTCAACAACTTAGGCAATACTGATATCAA TTTACATTCCAGTTCAACAACTTACGCAATACTGATATCAA < 41bp 1 0.0584751799033286 1 0.0669218301773071 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient USP15 ENSG00000135655 CDS Human protein_coding chr12:62785130 chr12:62785134 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_24368 0 0 1 0 1 USP15 chr12:62785209 5'GT 62785209 Upstream 76bp
chr12 53516967 53516967 1 + C T HNSC 53516960 + 53516940 53516980 41 TTCTGCTTCGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT TTCTGCTTCGTCCTGGGGTTCTTCTATTCCGTCATGCTGAT < 41bp 1 0.124317063603937 1 0.0580506920814514 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53516960 chr12:53516967 nonsynonymous SNV 0.996 4 28 hm5C_associated_SNPs_24369 0 0 0 0 1 SOAT2 chr12:53517000 5'GT 53517000 Upstream 34bp
chr15 38773557 38773557 1 + C T KICH 38773574 + 38773554 38773594 41 CAACGATTACAATGGCACATCTACTTGCTGCTCGTGAAGAT CAATGATTACAATGGCACATCTACTTGCTGCTCGTGAAGAT < 41bp 1 0.391107299758663 1 0.168533056974411 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAM98B ENSG00000171262 CDS Human protein_coding chr15:38773574 chr15:38773557 nonsynonymous SNV 0.197 3 4 hm5C_associated_SNPs_24370 0 0 1 0 1 FAM98B chr15:38773493 3'AG 38773493 Downstream 65bp
chr1 2235813 2235813 1 + G T KICH 2235794 + 2235774 2235814 41 CATCCAGCTCCGCCAAGGACCTGGGCTCCCCGGGTGCGCGT CATCCAGCTCCGCCAAGGACCTGGGCTCCCCGGGTGCGCTT < 41bp 1 0.78548928973275 1 0.683588624000549 experiment 0.429021420534501 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SKI ENSG00000157933 CDS Human protein_coding chr1:2235794 chr1:2235813 nonsynonymous SNV 0.008 1 40 hm5C_associated_SNPs_24371 0 0 1 0 1 SKI chr1:2235732 3'AG 2235732 Downstream 82bp
chr8 145139183 145139183 1 + T C KICH 145139185 + 145139165 145139205 41 CTTGACCTGCTCAATCTCTTCCAGACCTTCTGCCAGAAAGG CTTGACCTGCTCAATCTCCTCCAGACCTTCTGCCAGAAAGG < 41bp 1 0.539022557434636 1 0.55097109079361 experiment 0.921954885130728 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139185 chr8:145139183 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_24372 0 0 1 0 1 GPAA1 chr8:145139233 5'GT 145139233 Upstream 51bp
chr3 47041771 47041771 1 + G A KICH 47041773 + 47041753 47041793 41 TCCTTCGCCACTGGATGGGCCGCGGCCCTTTCCTGCTGCTC TCCTTCGCCACTGGATGGACCGCGGCCCTTTCCTGCTGCTC < 41bp 1 0.428939734325509 1 0.46638748049736 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041773 chr3:47041771 synonymous SNV . 0 19 hm5C_associated_SNPs_24373 0 0 1 0 1 NBEAL2 chr3:47041686 3'AG 47041686 Downstream 86bp
chr15 41105576 41105576 1 + C T KICH 41105590 + 41105570 41105610 41 TGACGACGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGC TGACGATGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGC < 41bp 1 0.456981145751482 1 0.123775213956833 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105590 chr15:41105576 synonymous SNV . 0 7 hm5C_associated_SNPs_24374 0 0 0 0 2 ZFYVE19 chr15:41105536 3'AG 41105536 Downstream 41bp
chr15 41105576 41105576 1 + C T KICH 41105590 + 41105570 41105610 41 TGACGACGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGC TGACGATGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGC < 41bp 1 0.456981145751482 1 0.123775213956833 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105590 chr15:41105576 synonymous SNV . 0 7 hm5C_associated_SNPs_24374 0 0 0 0 2 ZFYVE19 chr15:41105615 5'GT 41105615 Upstream 40bp
chr4 3107131 3107131 1 + G A KICH 3107132 + 3107112 3107152 41 CCCTGTGGAGGTTTGCTGAGCTGGCTCACCTGGTTCGGCCT CCCTGTGGAGGTTTGCTGAACTGGCTCACCTGGTTCGGCCT < 41bp 1 0.346698319158763 1 0.183101534843445 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3107132 chr4:3107131 synonymous SNV . 0 20 hm5C_associated_SNPs_24376 0 0 1 0 2 HTT chr4:3107084 3'AG 3107084 Downstream 48bp
chr4 3107131 3107131 1 + G A KICH 3107132 + 3107112 3107152 41 CCCTGTGGAGGTTTGCTGAGCTGGCTCACCTGGTTCGGCCT CCCTGTGGAGGTTTGCTGAACTGGCTCACCTGGTTCGGCCT < 41bp 1 0.346698319158763 1 0.183101534843445 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3107132 chr4:3107131 synonymous SNV . 0 20 hm5C_associated_SNPs_24376 0 0 1 0 2 HTT chr4:3107163 5'GT 3107163 Upstream 33bp
chr17 79663491 79663491 1 + G A KICH 79663489 + 79663469 79663509 41 GGAGAAGCTTCGCCGGGCAGCCGAGGAGGCAGAGCGCCAGC GGAGAAGCTTCGCCGGGCAGCCAAGGAGGCAGAGCGCCAGC < 41bp 1 0.508411942241764 1 0.670639276504517 experiment 0.983176115516473 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79663489 chr17:79663491 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_24377 0 0 1 0 1 HGS chr17:79663559 5'GT 79663559 Upstream 69bp
chr18 21474920 21474920 1 + C T KICH 21474924 + 21474904 21474944 41 ACCTGGCCACCATGGGCGAGCAGCTCCGCCTGGTCAAGTCT ACCTGGCCACCATGGGTGAGCAGCTCCGCCTGGTCAAGTCT < 41bp 1 0.20218483391886 1 0.182877540588379 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21474924 chr18:21474920 synonymous SNV . 0 17 hm5C_associated_SNPs_24378 0 0 0 0 1 LAMA3 chr18:21474871 3'AG 21474871 Downstream 50bp
chr16 70164360 70164360 1 + T A KICH 70164350 + 70164330 70164370 41 TCAGATCTATGACCGGACATCTGTTCTTCATGTAATGGTCA TCAGATCTATGACCGGACATCTGTTCTTCAAGTAATGGTCA < 41bp 1 0.0919961780083815 1 0.0905458927154541 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70164350 chr16:70164360 nonsynonymous SNV 0.983 2 31 hm5C_associated_SNPs_24379 0 0 1 0 2 PDPR chr16:70164326 3'AG 70164326 Downstream 35bp
chr16 70164360 70164360 1 + T A KICH 70164350 + 70164330 70164370 41 TCAGATCTATGACCGGACATCTGTTCTTCATGTAATGGTCA TCAGATCTATGACCGGACATCTGTTCTTCAAGTAATGGTCA < 41bp 1 0.0919961780083815 1 0.0905458927154541 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70164350 chr16:70164360 nonsynonymous SNV 0.983 2 31 hm5C_associated_SNPs_24379 0 0 1 0 2 PDPR chr16:70164447 5'GT 70164447 Upstream 88bp
chrX 103431192 103431192 1 + C T KICH 103431198 + 103431178 103431218 41 CTGAGATGGGTCTTCGGGAGCAACTTGATATTATTAAGATC CTGAGATGGGTCTTTGGGAGCAACTTGATATTATTAAGATC < 41bp 1 0.304204911520448 1 0.208489209413528 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM199X ENSG00000123575 CDS Human protein_coding chrX:103431198 chrX:103431192 nonsynonymous SNV 0.999 4 15 hm5C_associated_SNPs_24380 0 0 1 0 1 FAM199X chrX:103431141 3'AG 103431141 Downstream 52bp
chr1 144014069 144014069 1 + G A KICH 144014050 + 144014030 144014070 41 ACCTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGC ACCTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATAC < 41bp 1 0.197186467724421 1 0.282242774963379 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014050 chr1:144014069 . 0.988 0 40 hm5C_associated_SNPs_24381 0 0 1 0 1 FAM72C;NBPF20 chr1:144014093 5'GT 144014093 Upstream 25bp
chr1 144014069 144014069 1 + G A KICH 144014052 + 144014032 144014072 41 CTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGCAG CTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATACAG < 41bp 1 0.226728623165718 1 0.478270620107651 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014052 chr1:144014069 . 0.988 0 38 hm5C_associated_SNPs_24382 0 0 1 0 1 FAM72C;NBPF20 chr1:144014093 5'GT 144014093 Upstream 25bp
chr14 93277911 93277911 1 + C T KICH 93277898 + 93277878 93277918 41 TATAAAAATTTGTCACAGAGCGAGTTTGCTGCACGCCTTAA TATAAAAATTTGTCACAGAGCGAGTTTGCTGCATGCCTTAA < 41bp 1 0.533074970440356 1 0.232861995697021 experiment 0.933850059119289 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93277898 chr14:93277911 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_24384 0 0 0 0 1 GOLGA5 chr14:93277896 3'AG 93277896 Downstream 16bp
chr5 54654428 54654428 1 + T C KICH 54654434 + 54654414 54654454 41 AATACATTCAGATGTCTGGTCGTGCTGGAAGGAGAGGAATG AATACATTCAGATGCCTGGTCGTGCTGGAAGGAGAGGAATG < 41bp 1 0.219840801200112 1 0.108363717794418 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54654434 chr5:54654428 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_24385 0 0 1 0 2 SKIV2L2 chr5:54654401 3'AG 54654401 Downstream 28bp
chr5 54654428 54654428 1 + T C KICH 54654434 + 54654414 54654454 41 AATACATTCAGATGTCTGGTCGTGCTGGAAGGAGAGGAATG AATACATTCAGATGCCTGGTCGTGCTGGAAGGAGAGGAATG < 41bp 1 0.219840801200112 1 0.108363717794418 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54654434 chr5:54654428 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_24385 0 0 1 0 2 SKIV2L2 chr5:54654526 5'GT 54654526 Upstream 99bp
chr4 126337737 126337737 1 + A C KICH 126337729 + 126337709 126337749 41 GAGTAACACAGAGTCTGGATCGGGAAACAAAAGAGCGCTTT GAGTAACACAGAGTCTGGATCGGGAAACCAAAGAGCGCTTT < 41bp 1 0.632379536544556 1 0.919491589069366 experiment 0.735240926910888 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126337729 chr4:126337737 synonymous SNV . 0 29 hm5C_associated_SNPs_24386 0 0 0 0 1 FAT4 chr4:126337777 5'GT 126337777 Upstream 41bp
chr13 49771038 49771038 1 + A T KICH 49771026 + 49771006 49771046 41 TTTCTAGTTTGGACCATTTTCAGAAAAATGTGATATTACTA TTTCTAGTTTGGACCATTTTCAGAAAAATGTGTTATTACTA < 41bp 1 0.685424544566873 1 0.87929368019104 experiment 0.629150910866254 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49771026 chr13:49771038 nonsynonymous SNV 0.996 0 33 hm5C_associated_SNPs_24387 0 0 1 2 2 FNDC3A chr13:49771013 3'AG 49771013 Downstream 26bp
chr13 49771038 49771038 1 + A T KICH 49771026 + 49771006 49771046 41 TTTCTAGTTTGGACCATTTTCAGAAAAATGTGATATTACTA TTTCTAGTTTGGACCATTTTCAGAAAAATGTGTTATTACTA < 41bp 1 0.685424544566873 1 0.87929368019104 experiment 0.629150910866254 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49771026 chr13:49771038 nonsynonymous SNV 0.996 0 33 hm5C_associated_SNPs_24387 0 0 1 2 2 FNDC3A chr13:49771126 5'GT 49771126 Upstream 89bp
chr9 131730829 131730829 1 + A G KICH 131730830 + 131730810 131730850 41 TTGTTCAGTGCCTTCGGGAACAGTCCATGCTGCTAGAAATT TTGTTCAGTGCCTTCGGGAGCAGTCCATGCTGCTAGAAATT < 41bp 1 0.0399362497035913 1 0.228177636861801 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUP188 ENSG00000095319 CDS Human protein_coding chr9:131730830 chr9:131730829 synonymous SNV . 0 20 hm5C_associated_SNPs_24390 0 0 1 0 1 NUP188 chr9:131730785 3'AG 131730785 Downstream 45bp
chr17 48154412 48154412 1 + C G KICH 48154408 + 48154388 48154428 41 CGAACACCCGGACCTCGGAGCGCTCCGGGGAGGACGCCCAC CGAACACCCGGACCTCGGAGCGCTGCGGGGAGGACGCCCAC < 41bp 1 0.308358749160795 1 0.405562669038773 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48154408 chr17:48154412 nonsynonymous SNV 0.016 0 25 hm5C_associated_SNPs_24391 0 0 0 0 2 ITGA3 chr17:48154338 3'AG 48154338 Downstream 75bp
chr17 48154412 48154412 1 + C G KICH 48154408 + 48154388 48154428 41 CGAACACCCGGACCTCGGAGCGCTCCGGGGAGGACGCCCAC CGAACACCCGGACCTCGGAGCGCTGCGGGGAGGACGCCCAC < 41bp 1 0.308358749160795 1 0.405562669038773 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48154408 chr17:48154412 nonsynonymous SNV 0.016 0 25 hm5C_associated_SNPs_24391 0 0 0 0 2 ITGA3 chr17:48154485 5'GT 48154485 Upstream 74bp
chr17 48154412 48154412 1 + C G KICH 48154410 + 48154390 48154430 41 AACACCCGGACCTCGGAGCGCTCCGGGGAGGACGCCCACGA AACACCCGGACCTCGGAGCGCTGCGGGGAGGACGCCCACGA < 41bp 1 0.713563897287736 1 0.753378868103027 experiment 0.572872205424528 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48154410 chr17:48154412 nonsynonymous SNV 0.016 0 23 hm5C_associated_SNPs_24392 0 0 0 0 2 ITGA3 chr17:48154338 3'AG 48154338 Downstream 75bp
chr17 48154412 48154412 1 + C G KICH 48154410 + 48154390 48154430 41 AACACCCGGACCTCGGAGCGCTCCGGGGAGGACGCCCACGA AACACCCGGACCTCGGAGCGCTGCGGGGAGGACGCCCACGA < 41bp 1 0.713563897287736 1 0.753378868103027 experiment 0.572872205424528 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48154410 chr17:48154412 nonsynonymous SNV 0.016 0 23 hm5C_associated_SNPs_24392 0 0 0 0 2 ITGA3 chr17:48154485 5'GT 48154485 Upstream 74bp
chr10 129866455 129866455 1 + C T KICH 129866472 + 129866452 129866492 41 CTTCGGAGTGCCTTTTACCCCCATTGGGATGCTGAAGTTCC CTTTGGAGTGCCTTTTACCCCCATTGGGATGCTGAAGTTCC < 41bp 1 0.100020123214914 1 0.0980632603168488 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRE ENSG00000132334 CDS Human protein_coding chr10:129866472 chr10:129866455 synonymous SNV . 0 4 hm5C_associated_SNPs_24393 0 0 0 2 1 PTPRE chr10:129866387 3'AG 129866387 Downstream 69bp
chr7 90233538 90233538 1 + A G KICH 90233548 + 90233528 90233568 41 ATAGCTTTGAAGAAAGATGACACCACCTTTGATGAGGTAGG ATAGCTTTGAGGAAAGATGACACCACCTTTGATGAGGTAGG < 41bp 1 0.281146050624208 1 0.198277980089188 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90233548 chr7:90233538 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_24394 0 0 0 0 2 CDK14 chr7:90233532 3'AG 90233532 Downstream 7bp
chr7 90233538 90233538 1 + A G KICH 90233548 + 90233528 90233568 41 ATAGCTTTGAAGAAAGATGACACCACCTTTGATGAGGTAGG ATAGCTTTGAGGAAAGATGACACCACCTTTGATGAGGTAGG < 41bp 1 0.281146050624208 1 0.198277980089188 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90233548 chr7:90233538 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_24394 0 0 0 0 2 CDK14 chr7:90233563 5'GT 90233563 Upstream 26bp
chr18 9954094 9954094 1 + T A KICH 9954099 + 9954079 9954119 41 ACATTCGGATAAACCTGGATCAACCTCAACTGCATCCTTCA ACATTCGGATAAACCAGGATCAACCTCAACTGCATCCTTCA < 41bp 1 0.257820167573931 1 0.140516489744186 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VAPA ENSG00000101558 CDS Human protein_coding chr18:9954099 chr18:9954094 synonymous SNV . 0 16 hm5C_associated_SNPs_24395 0 0 1 0 1 VAPA chr18:9954050 3'AG 9954050 Downstream 45bp
chr4 99341203 99341203 1 + T C KICH 99341204 + 99341184 99341224 41 AAGATGTTATCAGCTGGGGTCACAGAGGCAGTTTTGAAATT AAGATGTTATCAGCTGGGGCCACAGAGGCAGTTTTGAAATT < 41bp 1 0.240195513801608 1 0.239603668451309 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99341204 chr4:99341203 nonsynonymous SNV 0.978 3 20 hm5C_associated_SNPs_24398 0 0 0 0 2 RAP1GDS1 chr4:99341170 3'AG 99341170 Downstream 34bp
chr4 99341203 99341203 1 + T C KICH 99341204 + 99341184 99341224 41 AAGATGTTATCAGCTGGGGTCACAGAGGCAGTTTTGAAATT AAGATGTTATCAGCTGGGGCCACAGAGGCAGTTTTGAAATT < 41bp 1 0.240195513801608 1 0.239603668451309 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99341204 chr4:99341203 nonsynonymous SNV 0.978 3 20 hm5C_associated_SNPs_24398 0 0 0 0 2 RAP1GDS1 chr4:99341295 5'GT 99341295 Upstream 93bp
chr11 73360070 73360070 1 + C A KICH 73360060 + 73360040 73360080 41 CGTGGCTCCTCTGACAGGTCCCGCCTGACTCCGCTCTGGAA CGTGGCTCCTCTGACAGGTCCCGCCTGACTACGCTCTGGAA < 41bp 1 0.105977634993307 1 0.0444432199001312 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHB1 ENSG00000021300 CDS Human protein_coding chr11:73360060 chr11:73360070 nonsynonymous SNV 0.561 2 31 hm5C_associated_SNPs_24399 0 0 1 0 1 PLEKHB1 chr11:73360057 3'AG 73360057 Downstream 14bp
chr1 116946537 116946537 1 + T C KICH 116946536 + 116946516 116946556 41 TGGTTCTGTGCCTTCCCCTACTCTCTTCTCATCTTCGTATA TGGTTCTGTGCCTTCCCCTACCCTCTTCTCATCTTCGTATA < 41bp 1 0.0477090797503636 1 0.059569776058197 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116946536 chr1:116946537 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_24400 0 0 1 0 1 ATP1A1 chr1:116946506 3'AG 116946506 Downstream 32bp
chr19 12917591 12917591 1 + A T KICH 12917604 + 12917584 12917624 41 GTCGATGAGGCGGGCAGGGGCCCCGTGCTGGGTGCGCCCCT GTCGATGTGGCGGGCAGGGGCCCCGTGCTGGGTGCGCCCCT < 41bp 1 0.674031893609806 1 0.171734899282455 experiment 0.651936212780388 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12917604 chr19:12917591 nonsynonymous SNV 0.999 5 8 hm5C_associated_SNPs_24402 0 0 1 0 1 RNASEH2A chr19:12917614 5'GT 12917614 Upstream 24bp
chr19 12917591 12917591 1 + A T KICH 12917605 + 12917585 12917625 41 TCGATGAGGCGGGCAGGGGCCCCGTGCTGGGTGCGCCCCTA TCGATGTGGCGGGCAGGGGCCCCGTGCTGGGTGCGCCCCTA < 41bp 1 0.655712199937288 1 0.537184000015259 experiment 0.688575600125424 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12917605 chr19:12917591 nonsynonymous SNV 0.999 5 7 hm5C_associated_SNPs_24403 0 0 1 0 1 RNASEH2A chr19:12917614 5'GT 12917614 Upstream 24bp
chr19 12917591 12917591 1 + A T KICH 12917606 + 12917586 12917626 41 CGATGAGGCGGGCAGGGGCCCCGTGCTGGGTGCGCCCCTAG CGATGTGGCGGGCAGGGGCCCCGTGCTGGGTGCGCCCCTAG < 41bp 1 0.542991873909088 1 0.398810565471649 experiment 0.914016252181825 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12917606 chr19:12917591 nonsynonymous SNV 0.999 5 6 hm5C_associated_SNPs_24404 0 0 1 0 1 RNASEH2A chr19:12917614 5'GT 12917614 Upstream 24bp
chr3 48506046 48506046 1 + C T KICH 48506026 + 48506006 48506046 41 GTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGC GTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGT < 41bp 1 0.26583412716344 1 0.117169976234436 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506026 chr3:48506046 synonymous SNV . 0 41 hm5C_associated_SNPs_24405 0 0 0 0 2 ATRIP chr3:48505981 3'AG 48505981 Downstream 66bp
chr3 48506046 48506046 1 + C T KICH 48506026 + 48506006 48506046 41 GTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGC GTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGT < 41bp 1 0.26583412716344 1 0.117169976234436 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506026 chr3:48506046 synonymous SNV . 0 41 hm5C_associated_SNPs_24405 0 0 0 0 2 ATRIP chr3:48506061 5'GT 48506061 Upstream 16bp
chr3 48506046 48506046 1 + C T KICH 48506027 + 48506007 48506047 41 TGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGCC TGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGTC < 41bp 1 0.278888577532318 1 0.108530968427658 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506027 chr3:48506046 synonymous SNV . 0 40 hm5C_associated_SNPs_24406 0 0 0 0 2 ATRIP chr3:48505981 3'AG 48505981 Downstream 66bp
chr3 48506046 48506046 1 + C T KICH 48506027 + 48506007 48506047 41 TGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGCC TGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGTC < 41bp 1 0.278888577532318 1 0.108530968427658 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506027 chr3:48506046 synonymous SNV . 0 40 hm5C_associated_SNPs_24406 0 0 0 0 2 ATRIP chr3:48506061 5'GT 48506061 Upstream 16bp
chr14 103802243 103802243 1 + T C KICH 103802231 + 103802211 103802251 41 TCAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATG TCAACCGCAGCGTGTCAGACCAGTTCTATCGCCACAAGATG < 41bp 1 0.186885061025554 1 0.0626984238624573 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103802231 chr14:103802243 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_24408 0 0 1 0 1 EIF5 chr14:103802269 5'GT 103802269 Upstream 27bp
chr1 39888090 39888090 1 + G A KIRC 39888071 + 39888051 39888091 41 TCAGAAAGAACAAGTGGATCCTCTTCAGATGAAATTGCAGC TCAGAAAGAACAAGTGGATCCTCTTCAGATGAAATTGCAAC < 41bp 1 0.0336309132429318 1 0.159667730331421 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39888071 chr1:39888090 synonymous SNV . 0 40 hm5C_associated_SNPs_24412 0 0 1 0 1 MACF1 chr1:39888046 3'AG 39888046 Downstream 45bp
chr1 39888091 39888091 1 + C T KIRC 39888071 + 39888051 39888091 41 TCAGAAAGAACAAGTGGATCCTCTTCAGATGAAATTGCAGC TCAGAAAGAACAAGTGGATCCTCTTCAGATGAAATTGCAGT < 41bp 1 0.0280661778442473 1 0.137552589178085 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39888071 chr1:39888091 stopgain 1.000 1 41 hm5C_associated_SNPs_24413 0 0 1 0 1 MACF1 chr1:39888046 3'AG 39888046 Downstream 46bp
chr7 4796681 4796681 1 + C G KIRC 4796673 + 4796653 4796693 41 ACCGTTACTTTATCAAAGTCCCACGTTCCCAGGAGGAGCCT ACCGTTACTTTATCAAAGTCCCACGTTCGCAGGAGGAGCCT < 41bp 1 0.101498388454174 1 0.0330659151077271 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4796673 chr7:4796681 synonymous SNV . 0 29 hm5C_associated_SNPs_24414 0 0 1 0 1 FOXK1 chr7:4796625 3'AG 4796625 Downstream 57bp
chr10 112335137 112335137 1 + A G KIRC 112335144 + 112335124 112335164 41 GTCATCTTCGTCCAGAACAGCGGTTGGCTTTATTGCATGTG GTCATCTTCGTCCGGAACAGCGGTTGGCTTTATTGCATGTG < 41bp 1 0.258451909378425 1 0.190905511379242 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMC3 ENSG00000108055 CDS Human protein_coding chr10:112335144 chr10:112335137 synonymous SNV . 0 14 hm5C_associated_SNPs_24415 0 0 1 0 2 SMC3 chr10:112335094 3'AG 112335094 Downstream 44bp
chr10 112335137 112335137 1 + A G KIRC 112335144 + 112335124 112335164 41 GTCATCTTCGTCCAGAACAGCGGTTGGCTTTATTGCATGTG GTCATCTTCGTCCGGAACAGCGGTTGGCTTTATTGCATGTG < 41bp 1 0.258451909378425 1 0.190905511379242 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMC3 ENSG00000108055 CDS Human protein_coding chr10:112335144 chr10:112335137 synonymous SNV . 0 14 hm5C_associated_SNPs_24415 0 0 1 0 2 SMC3 chr10:112335161 5'GT 112335161 Upstream 25bp
chr19 49469167 49469167 1 + C T KIRC 49469156 + 49469136 49469176 41 ACCAGCGTGGCGGCCGCGCTCTCTTCCAGGACATCAAGGTA ACCAGCGTGGCGGCCGCGCTCTCTTCCAGGATATCAAGGTA < 41bp 1 0.425865764501637 1 0.235357195138931 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469156 chr19:49469167 synonymous SNV . 0 32 hm5C_associated_SNPs_24416 0 0 1 0 1 FTL chr19:49469173 5'GT 49469173 Upstream 7bp
chr19 49469167 49469167 1 + C T KIRC 49469161 + 49469141 49469181 41 CGTGGCGGCCGCGCTCTCTTCCAGGACATCAAGGTAACTAG CGTGGCGGCCGCGCTCTCTTCCAGGATATCAAGGTAACTAG < 41bp 1 0.762916254447212 1 0.79034435749054 experiment 0.474167491105576 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469161 chr19:49469167 synonymous SNV . 0 27 hm5C_associated_SNPs_24417 0 0 1 0 1 FTL chr19:49469173 5'GT 49469173 Upstream 7bp
chr10 94109483 94109483 1 + T G KIRC 94109496 + 94109476 94109516 41 CAGATCATGTCTCTGCTACTCGAATCTTGTGTGGAGCCCTT CAGATCAGGTCTCTGCTACTCGAATCTTGTGTGGAGCCCTT < 41bp 1 0.472464400079859 1 0.508540332317352 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH5 ENSG00000198060 CDS Human protein_coding chr10:94109496 chr10:94109483 nonsynonymous SNV 0.998 1 8 hm5C_associated_SNPs_24419 0 0 1 0 1 MARCH5 chr10:94109428 3'AG 94109428 Downstream 56bp
chr6 149691195 149691195 1 + C G KIRC 149691182 + 149691162 149691202 41 TTCAGGTTTTACATGACCTGCGACAAAAATTCCCTGAAGTA TTCAGGTTTTACATGACCTGCGACAAAAATTCCGTGAAGTA < 41bp 1 0.494714490800968 1 0.143286943435669 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAB2 ENSG00000055208 CDS Human protein_coding chr6:149691182 chr6:149691195 nonsynonymous SNV 0.999 3 34 hm5C_associated_SNPs_24420 0 0 1 0 1 TAB2 chr6:149691235 5'GT 149691235 Upstream 41bp
chr3 5215726 5215726 1 + G C KIRC 5215729 + 5215709 5215749 41 TGCTTGGAAACAAGAGAGATCTTCCTAATGCCTTGGATGAG TGCTTGGAAACAAGAGACATCTTCCTAATGCCTTGGATGAG < 41bp 1 0.101357289439933 1 0.0707306265830994 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARL8B ENSG00000134108 CDS Human protein_coding chr3:5215729 chr3:5215726 nonsynonymous SNV 1.000 5 18 hm5C_associated_SNPs_24422 0 0 1 0 2 ARL8B chr3:5215702 3'AG 5215702 Downstream 25bp
chr3 5215726 5215726 1 + G C KIRC 5215729 + 5215709 5215749 41 TGCTTGGAAACAAGAGAGATCTTCCTAATGCCTTGGATGAG TGCTTGGAAACAAGAGACATCTTCCTAATGCCTTGGATGAG < 41bp 1 0.101357289439933 1 0.0707306265830994 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARL8B ENSG00000134108 CDS Human protein_coding chr3:5215729 chr3:5215726 nonsynonymous SNV 1.000 5 18 hm5C_associated_SNPs_24422 0 0 1 0 2 ARL8B chr3:5215769 5'GT 5215769 Upstream 44bp
chr12 104335645 104335645 1 + C T KIRC 104335627 + 104335607 104335647 41 AAGGTGGACTCAGATGATCTCCCCTTGAATGTTTCCCGCGA AAGGTGGACTCAGATGATCTCCCCTTGAATGTTTCCCGTGA < 41bp 1 0.319009261129234 1 0.393331229686737 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104335627 chr12:104335645 synonymous SNV . 0 39 hm5C_associated_SNPs_24425 0 0 1 0 2 HSP90B1 chr12:104335610 3'AG 104335610 Downstream 36bp
chr12 104335645 104335645 1 + C T KIRC 104335627 + 104335607 104335647 41 AAGGTGGACTCAGATGATCTCCCCTTGAATGTTTCCCGCGA AAGGTGGACTCAGATGATCTCCCCTTGAATGTTTCCCGTGA < 41bp 1 0.319009261129234 1 0.393331229686737 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104335627 chr12:104335645 synonymous SNV . 0 39 hm5C_associated_SNPs_24425 0 0 1 0 2 HSP90B1 chr12:104335675 5'GT 104335675 Upstream 31bp
chr1 24022342 24022342 1 + A T KIRC 24022327 + 24022307 24022347 41 TCAGCATCGCAGACAAGAAGCGCAGGACAGGCTGCATTGGG TCAGCATCGCAGACAAGAAGCGCAGGACAGGCTGCTTTGGG < 41bp 1 0.770634832965359 1 0.472493916749954 experiment 0.458730334069282 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022327 chr1:24022342 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_24428 0 0 1 1 2 RPL11 chr1:24022288 3'AG 24022288 Downstream 55bp
chr1 24022342 24022342 1 + A T KIRC 24022327 + 24022307 24022347 41 TCAGCATCGCAGACAAGAAGCGCAGGACAGGCTGCATTGGG TCAGCATCGCAGACAAGAAGCGCAGGACAGGCTGCTTTGGG < 41bp 1 0.770634832965359 1 0.472493916749954 experiment 0.458730334069282 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022327 chr1:24022342 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_24428 0 0 1 1 2 RPL11 chr1:24022398 5'GT 24022398 Upstream 57bp
chr12 121660766 121660766 1 + G A KIRC 121660778 + 121660758 121660798 41 ACAGGCAGGTGCGTAGCTTTCAACGGGTCTGTCAAGACGTG ACAGGCAGATGCGTAGCTTTCAACGGGTCTGTCAAGACGTG < 41bp 1 0.774065452861728 1 0.37146383523941 experiment 0.451869094276545 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control P2RX4;P2RX4 ENSG00000135124;ENSG00000135124 exonic;splicing Human protein_coding chr12:121660778 chr12:121660766 synonymous SNV 0.008 0 9 hm5C_associated_SNPs_24429 0 0 0 0 2 P2RX4 chr12:121660750 3'AG 121660750 Downstream 17bp
chr12 121660766 121660766 1 + G A KIRC 121660778 + 121660758 121660798 41 ACAGGCAGGTGCGTAGCTTTCAACGGGTCTGTCAAGACGTG ACAGGCAGATGCGTAGCTTTCAACGGGTCTGTCAAGACGTG < 41bp 1 0.774065452861728 1 0.37146383523941 experiment 0.451869094276545 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control P2RX4;P2RX4 ENSG00000135124;ENSG00000135124 exonic;splicing Human protein_coding chr12:121660778 chr12:121660766 synonymous SNV 0.008 0 9 hm5C_associated_SNPs_24429 0 0 0 0 2 P2RX4 chr12:121660846 5'GT 121660846 Upstream 81bp
chr5 64082386 64082386 1 + G A KIRC 64082382 + 64082362 64082402 41 TCCTTTTGATGACATCATTCCAAGGGAAATTAAAAGGCTGA TCCTTTTGATGACATCATTCCAAGAGAAATTAAAAGGCTGA < 41bp 1 0.568952728841727 1 0.72346693277359 experiment 0.862094542316545 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64082382 chr5:64082386 synonymous SNV . 0 25 hm5C_associated_SNPs_24431 0 0 1 0 2 CWC27 chr5:64082351 3'AG 64082351 Downstream 36bp
chr5 64082386 64082386 1 + G A KIRC 64082382 + 64082362 64082402 41 TCCTTTTGATGACATCATTCCAAGGGAAATTAAAAGGCTGA TCCTTTTGATGACATCATTCCAAGAGAAATTAAAAGGCTGA < 41bp 1 0.568952728841727 1 0.72346693277359 experiment 0.862094542316545 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64082382 chr5:64082386 synonymous SNV . 0 25 hm5C_associated_SNPs_24431 0 0 1 0 2 CWC27 chr5:64082454 5'GT 64082454 Upstream 69bp
chr17 57334552 57334552 1 + C T KIRC 57334550 + 57334530 57334570 41 GTTTTTGAGGCCTTTCCTAACACTCCCATTAACATCGATAT GTTTTTGAGGCCTTTCCTAACATTCCCATTAACATCGATAT < 41bp 1 0.0672798090487664 1 0.111685693264008 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GDPD1 ENSG00000153982 CDS Human protein_coding chr17:57334550 chr17:57334552 nonsynonymous SNV 0.984 1 23 hm5C_associated_SNPs_24432 0 0 1 0 2 GDPD1 chr17:57334483 3'AG 57334483 Downstream 70bp
chr17 57334552 57334552 1 + C T KIRC 57334550 + 57334530 57334570 41 GTTTTTGAGGCCTTTCCTAACACTCCCATTAACATCGATAT GTTTTTGAGGCCTTTCCTAACATTCCCATTAACATCGATAT < 41bp 1 0.0672798090487664 1 0.111685693264008 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GDPD1 ENSG00000153982 CDS Human protein_coding chr17:57334550 chr17:57334552 nonsynonymous SNV 0.984 1 23 hm5C_associated_SNPs_24432 0 0 1 0 2 GDPD1 chr17:57334601 5'GT 57334601 Upstream 50bp
chr8 121259910 121259910 1 + C T KIRC 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA TATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA < 41bp 1 0.0740973940853036 1 0.104654371738434 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259910 synonymous SNV . 0 1 hm5C_associated_SNPs_24433 0 0 0 0 2 COL14A1 chr8:121259852 3'AG 121259852 Downstream 59bp
chr8 121259910 121259910 1 + C T KIRC 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA TATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA < 41bp 1 0.0740973940853036 1 0.104654371738434 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259910 synonymous SNV . 0 1 hm5C_associated_SNPs_24433 0 0 0 0 2 COL14A1 chr8:121259974 5'GT 121259974 Upstream 65bp
chr22 44332970 44332970 1 + C T KIRC 44332984 + 44332964 44333004 41 CATCCTCAGAAGGGATGGATCCTGAGGTCGCCATGCCCAGC CATCCTTAGAAGGGATGGATCCTGAGGTCGCCATGCCCAGC < 41bp 1 0.603435112826838 1 0.110291212797165 experiment 0.793129774346324 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44332984 chr22:44332970 nonsynonymous SNV 0.001 0 7 hm5C_associated_SNPs_24435 0 0 1 0 1 PNPLA3 chr22:44332931 3'AG 44332931 Downstream 40bp
chr7 142458497 142458497 1 + C A KIRC 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGA < 41bp 1 0.603378148766714 1 0.849263906478882 experiment 0.793243702466573 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458497 synonymous SNV . 0 41 hm5C_associated_SNPs_24438 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 92bp
chr7 142458497 142458497 1 + C A KIRC 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGA < 41bp 1 0.603378148766714 1 0.849263906478882 experiment 0.793243702466573 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458497 synonymous SNV . 0 41 hm5C_associated_SNPs_24438 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 18bp
chr7 142458497 142458497 1 + C A KIRC 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGA < 41bp 1 0.603378148766714 1 0.849263906478882 experiment 0.793243702466573 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458497 synonymous SNV . 0 41 hm5C_associated_SNPs_24438 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 69bp
chr7 142458497 142458497 1 + C A KIRC 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGATACCACT < 41bp 1 0.0882951294628742 1 0.0631517469882965 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458497 synonymous SNV . 0 34 hm5C_associated_SNPs_24439 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 92bp
chr7 142458497 142458497 1 + C A KIRC 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGATACCACT < 41bp 1 0.0882951294628742 1 0.0631517469882965 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458497 synonymous SNV . 0 34 hm5C_associated_SNPs_24439 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 18bp
chr7 142458497 142458497 1 + C A KIRC 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGATACCACT < 41bp 1 0.0882951294628742 1 0.0631517469882965 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458497 synonymous SNV . 0 34 hm5C_associated_SNPs_24439 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 69bp
chr7 142458497 142458497 1 + C A KIRC 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGATACCACTT < 41bp 1 0.288046088387709 1 0.132348299026489 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458497 synonymous SNV . 0 33 hm5C_associated_SNPs_24440 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 92bp
chr7 142458497 142458497 1 + C A KIRC 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGATACCACTT < 41bp 1 0.288046088387709 1 0.132348299026489 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458497 synonymous SNV . 0 33 hm5C_associated_SNPs_24440 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 18bp
chr7 142458497 142458497 1 + C A KIRC 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGATACCACTT < 41bp 1 0.288046088387709 1 0.132348299026489 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458497 synonymous SNV . 0 33 hm5C_associated_SNPs_24440 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 69bp
chr7 142458497 142458497 1 + C A KIRC 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTACCAGGTGTCCCTGAATTCTGGATACCACTTC < 41bp 1 0.734344673999533 1 0.377329677343369 experiment 0.531310652000934 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458497 synonymous SNV . 0 32 hm5C_associated_SNPs_24441 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 92bp
chr7 142458497 142458497 1 + C A KIRC 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTACCAGGTGTCCCTGAATTCTGGATACCACTTC < 41bp 1 0.734344673999533 1 0.377329677343369 experiment 0.531310652000934 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458497 synonymous SNV . 0 32 hm5C_associated_SNPs_24441 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 18bp
chr7 142458497 142458497 1 + C A KIRC 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTACCAGGTGTCCCTGAATTCTGGATACCACTTC < 41bp 1 0.734344673999533 1 0.377329677343369 experiment 0.531310652000934 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458497 synonymous SNV . 0 32 hm5C_associated_SNPs_24441 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 69bp
chr7 142458497 142458497 1 + C A KIRC 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTGGATACCACTTCTGTGGTGGCTCCCT < 41bp 1 0.10071167144343 1 0.0333912968635559 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458497 synonymous SNV . 0 18 hm5C_associated_SNPs_24442 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 92bp
chr7 142458497 142458497 1 + C A KIRC 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTGGATACCACTTCTGTGGTGGCTCCCT < 41bp 1 0.10071167144343 1 0.0333912968635559 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458497 synonymous SNV . 0 18 hm5C_associated_SNPs_24442 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 18bp
chr7 142458497 142458497 1 + C A KIRC 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTGGATACCACTTCTGTGGTGGCTCCCT < 41bp 1 0.10071167144343 1 0.0333912968635559 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458497 synonymous SNV . 0 18 hm5C_associated_SNPs_24442 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 69bp
chr7 142458497 142458497 1 + C A KIRC 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGGATACCACTTCTGTGGTGGCTCCCTC < 41bp 1 0.218736703491108 1 0.0931905806064606 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458497 synonymous SNV . 0 17 hm5C_associated_SNPs_24443 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 92bp
chr7 142458497 142458497 1 + C A KIRC 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGGATACCACTTCTGTGGTGGCTCCCTC < 41bp 1 0.218736703491108 1 0.0931905806064606 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458497 synonymous SNV . 0 17 hm5C_associated_SNPs_24443 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 18bp
chr7 142458497 142458497 1 + C A KIRC 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGGATACCACTTCTGTGGTGGCTCCCTC < 41bp 1 0.218736703491108 1 0.0931905806064606 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458497 synonymous SNV . 0 17 hm5C_associated_SNPs_24443 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 69bp
chr7 142458497 142458497 1 + C A KIRC 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGATACCACTTCTGTGGTGGCTCCCTCAT < 41bp 1 0.30814467939379 1 0.189063370227814 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458497 synonymous SNV . 0 15 hm5C_associated_SNPs_24444 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 92bp
chr7 142458497 142458497 1 + C A KIRC 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGATACCACTTCTGTGGTGGCTCCCTCAT < 41bp 1 0.30814467939379 1 0.189063370227814 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458497 synonymous SNV . 0 15 hm5C_associated_SNPs_24444 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 18bp
chr7 142458497 142458497 1 + C A KIRC 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGATACCACTTCTGTGGTGGCTCCCTCAT < 41bp 1 0.30814467939379 1 0.189063370227814 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458497 synonymous SNV . 0 15 hm5C_associated_SNPs_24444 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 69bp
chr7 142458497 142458497 1 + C A KIRC 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGGATACCACTTCTGTGGTGGCTCCCTCATCAA < 41bp 1 0.585971171487962 1 0.346238017082214 experiment 0.828057657024075 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458497 synonymous SNV . 0 12 hm5C_associated_SNPs_24445 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 92bp
chr7 142458497 142458497 1 + C A KIRC 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGGATACCACTTCTGTGGTGGCTCCCTCATCAA < 41bp 1 0.585971171487962 1 0.346238017082214 experiment 0.828057657024075 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458497 synonymous SNV . 0 12 hm5C_associated_SNPs_24445 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 18bp
chr7 142458497 142458497 1 + C A KIRC 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGGATACCACTTCTGTGGTGGCTCCCTCATCAA < 41bp 1 0.585971171487962 1 0.346238017082214 experiment 0.828057657024075 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458497 synonymous SNV . 0 12 hm5C_associated_SNPs_24445 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 69bp
chr7 142458497 142458497 1 + C A KIRC 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGATACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG < 41bp 1 0.255805210945914 1 0.112311393022537 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458497 synonymous SNV . 0 3 hm5C_associated_SNPs_24446 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 92bp
chr7 142458497 142458497 1 + C A KIRC 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGATACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG < 41bp 1 0.255805210945914 1 0.112311393022537 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458497 synonymous SNV . 0 3 hm5C_associated_SNPs_24446 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 18bp
chr7 142458497 142458497 1 + C A KIRC 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGATACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG < 41bp 1 0.255805210945914 1 0.112311393022537 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458497 synonymous SNV . 0 3 hm5C_associated_SNPs_24446 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 69bp
chr7 142458497 142458497 1 + C A KIRC 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG ATACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG < 41bp 1 0.0936250890018987 1 0.0590954720973969 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458497 synonymous SNV . 0 1 hm5C_associated_SNPs_24447 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 92bp
chr7 142458497 142458497 1 + C A KIRC 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG ATACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG < 41bp 1 0.0936250890018987 1 0.0590954720973969 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458497 synonymous SNV . 0 1 hm5C_associated_SNPs_24447 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 18bp
chr7 142458497 142458497 1 + C A KIRC 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG ATACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG < 41bp 1 0.0936250890018987 1 0.0590954720973969 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458497 synonymous SNV . 0 1 hm5C_associated_SNPs_24447 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 69bp
chr9 138662896 138662896 1 + G A KIRC 138662890 + 138662870 138662910 41 GGGCCTTCTCGGGGCAGGGGCTGCACGAGGGTCCGGCCCGC GGGCCTTCTCGGGGCAGGGGCTGCACAAGGGTCCGGCCCGC < 41bp 1 0.716225163269794 1 0.751378417015076 experiment 0.567549673460412 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control KCNT1 ENSG00000107147 CDS Human protein_coding chr9:138662890 chr9:138662896 nonsynonymous SNV 0.007 0 27 hm5C_associated_SNPs_24448 0 0 0 0 1 KCNT1 chr9:138662941 5'GT 138662941 Upstream 46bp
chr12 6493822 6493822 1 + C G KIRC 6493838 + 6493818 6493858 41 AGCACCGCATCTGCTGCTCCCGCTGCCCGCCAGGTGAGAGG AGCAGCGCATCTGCTGCTCCCGCTGCCCGCCAGGTGAGAGG < 41bp 1 0.380791257969082 1 0.183897733688354 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LTBR ENSG00000111321 CDS Human protein_coding chr12:6493838 chr12:6493822 nonsynonymous SNV 0.070 0 5 hm5C_associated_SNPs_24451 0 0 1 0 2 LTBR chr12:6493754 3'AG 6493754 Downstream 69bp
chr12 6493822 6493822 1 + C G KIRC 6493838 + 6493818 6493858 41 AGCACCGCATCTGCTGCTCCCGCTGCCCGCCAGGTGAGAGG AGCAGCGCATCTGCTGCTCCCGCTGCCCGCCAGGTGAGAGG < 41bp 1 0.380791257969082 1 0.183897733688354 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LTBR ENSG00000111321 CDS Human protein_coding chr12:6493838 chr12:6493822 nonsynonymous SNV 0.070 0 5 hm5C_associated_SNPs_24451 0 0 1 0 2 LTBR chr12:6493850 5'GT 6493850 Upstream 29bp
chrX 153008788 153008788 1 + G A KIRC 153008774 + 153008754 153008794 41 GACGCGGGCATTGCCCTGCTCTCCATCACCCACCGGCCCTC GACGCGGGCATTGCCCTGCTCTCCATCACCCACCAGCCCTC < 41bp 1 0.759969855309185 1 0.90837836265564 experiment 0.480060289381629 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153008774 chrX:153008788 nonsynonymous SNV 0.943 5 35 hm5C_associated_SNPs_24453 0 0 0 0 1 ABCD1 chrX:153008800 5'GT 153008800 Upstream 13bp
chr17 19237309 19237309 1 + G T KIRC 19237313 + 19237293 19237333 41 TTAACCCTTTCCAGGTGAACCAGCCCCAGCCGCTGACACTG TTAACCCTTTCCAGGTTAACCAGCCCCAGCCGCTGACACTG < 41bp 1 0.595556313442573 1 0.489655375480652 experiment 0.808887373114853 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EPN2 ENSG00000072134 CDS Human protein_coding chr17:19237313 chr17:19237309 synonymous SNV . 0 17 hm5C_associated_SNPs_24454 0 0 1 0 1 EPN2 chr17:19237269 3'AG 19237269 Downstream 41bp
chr19 3533336 3533336 1 + G A KIRC 3533341 + 3533321 3533361 41 GATCCTTGTCTGGAAGTACCCCTCCCTGACCCAGGTGGCCA GATCCTTGTCTGGAAATACCCCTCCCTGACCCAGGTGGCCA < 41bp 1 0.0980461017281701 1 0.118881672620773 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3533341 chr19:3533336 synonymous SNV . 0 16 hm5C_associated_SNPs_24455 0 0 0 0 2 FZR1 chr19:3533292 3'AG 3533292 Downstream 45bp
chr19 3533336 3533336 1 + G A KIRC 3533341 + 3533321 3533361 41 GATCCTTGTCTGGAAGTACCCCTCCCTGACCCAGGTGGCCA GATCCTTGTCTGGAAATACCCCTCCCTGACCCAGGTGGCCA < 41bp 1 0.0980461017281701 1 0.118881672620773 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3533341 chr19:3533336 synonymous SNV . 0 16 hm5C_associated_SNPs_24455 0 0 0 0 2 FZR1 chr19:3533396 5'GT 3533396 Upstream 61bp
chr1 228246774 228246774 1 + G T KIRC 228246782 + 228246762 228246802 41 TGGTCGCAACCCGACTTCCGCGCCATCGGTGACTTCCTCAA TGGTCGCAACCCTACTTCCGCGCCATCGGTGACTTCCTCAA < 41bp 1 0.686700627222139 1 0.657427787780762 experiment 0.626598745555721 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WNT3A ENSG00000154342 CDS Human protein_coding chr1:228246782 chr1:228246774 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_24456 0 0 0 0 1 WNT3A chr1:228246687 3'AG 228246687 Downstream 88bp
chr7 150772425 150772425 1 + G A KIRC 150772436 + 150772416 150772456 41 CCATGGGCGGCATCTGTGCCCTCTTTGGCCTGCCCTGGTTG CCATGGGCGACATCTGTGCCCTCTTTGGCCTGCCCTGGTTG < 41bp 1 0.205020818785733 1 0.0417695045471191 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150772436 chr7:150772425 nonsynonymous SNV 0.963 4 10 hm5C_associated_SNPs_24457 0 0 1 0 1 SLC4A2 chr7:150772342 3'AG 150772342 Downstream 84bp
chr2 32631593 32631593 1 + G A KIRC 32631577 + 32631557 32631597 41 TTGATTTAAGTGATGATTTACTGGAGGATTCAGACAGTGAA TTGATTTAAGTGATGATTTACTGGAGGATTCAGACAATGAA < 41bp 1 0.304024300508274 1 0.502755165100098 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32631577 chr2:32631593 nonsynonymous SNV 0.999 2 37 hm5C_associated_SNPs_24458 0 0 1 0 2 BIRC6 chr2:32631567 3'AG 32631567 Downstream 27bp
chr2 32631593 32631593 1 + G A KIRC 32631577 + 32631557 32631597 41 TTGATTTAAGTGATGATTTACTGGAGGATTCAGACAGTGAA TTGATTTAAGTGATGATTTACTGGAGGATTCAGACAATGAA < 41bp 1 0.304024300508274 1 0.502755165100098 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32631577 chr2:32631593 nonsynonymous SNV 0.999 2 37 hm5C_associated_SNPs_24458 0 0 1 0 2 BIRC6 chr2:32631625 5'GT 32631625 Upstream 33bp
chr10 26994248 26994248 1 + C A KIRC 26994265 + 26994245 26994285 41 ACACAGTGGTGAAAAATACACCGATCCTTTCAAACTCGGTT ACAAAGTGGTGAAAAATACACCGATCCTTTCAAACTCGGTT < 41bp 1 0.223439174465599 1 0.111257880926132 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDSS1 ENSG00000148459 CDS Human protein_coding chr10:26994265 chr10:26994248 nonsynonymous SNV 0.946 1 4 hm5C_associated_SNPs_24460 0 0 1 0 2 PDSS1 chr10:26994215 3'AG 26994215 Downstream 34bp
chr10 26994248 26994248 1 + C A KIRC 26994265 + 26994245 26994285 41 ACACAGTGGTGAAAAATACACCGATCCTTTCAAACTCGGTT ACAAAGTGGTGAAAAATACACCGATCCTTTCAAACTCGGTT < 41bp 1 0.223439174465599 1 0.111257880926132 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDSS1 ENSG00000148459 CDS Human protein_coding chr10:26994265 chr10:26994248 nonsynonymous SNV 0.946 1 4 hm5C_associated_SNPs_24460 0 0 1 0 2 PDSS1 chr10:26994323 5'GT 26994323 Upstream 76bp
chr1 171756896 171756896 1 + G A KIRC 171756878 + 171756858 171756898 41 TCTGGTTGTACCTTCAGGTCCCCTTTCTGTCTGTGGGTGGG TCTGGTTGTACCTTCAGGTCCCCTTTCTGTCTGTGGGTAGG < 41bp 1 0.0641499132515896 1 0.0141966640949249 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171756878 chr1:171756896 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_24463 0 0 1 0 1 METTL13 chr1:171756875 3'AG 171756875 Downstream 22bp
chr17 37681093 37681093 1 + C T KIRC 37681077 + 37681057 37681097 41 ACTGAGCCTGTGAAGAACAGCAGCCCAGCACCACCTCAGCC ACTGAGCCTGTGAAGAACAGCAGCCCAGCACCACCTTAGCC < 41bp 1 0.340956655929301 1 0.403229922056198 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37681077 chr17:37681093 stopgain 0.996 1 37 hm5C_associated_SNPs_24465 0 0 1 0 1 CDK12 chr17:37681138 5'GT 37681138 Upstream 46bp
chr1 22336337 22336337 1 + A G KIRC 22336318 + 22336298 22336338 41 GGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGAC GGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGGC < 41bp 1 0.739470426740511 1 0.258261561393738 experiment 0.521059146518978 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336318 chr1:22336337 nonsynonymous SNV 0.898 0 40 hm5C_associated_SNPs_24466 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 14bp
chr1 22336337 22336337 1 + A G KIRC 22336323 + 22336303 22336343 41 CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGGCTGGAT < 41bp 1 0.645045475452473 1 0.182890564203262 experiment 0.709909049095055 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336323 chr1:22336337 nonsynonymous SNV 0.898 0 35 hm5C_associated_SNPs_24467 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 14bp
chr1 22336337 22336337 1 + A G KIRC 22336326 + 22336306 22336346 41 ACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGA ACGGTGTTCACTCGAGTCTCCGCCTTCATCGGCTGGATTGA < 41bp 1 0.422436466092754 1 0.0461675524711609 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336326 chr1:22336337 nonsynonymous SNV 0.898 0 32 hm5C_associated_SNPs_24468 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 14bp
chr1 22336337 22336337 1 + A G KIRC 22336329 + 22336309 22336349 41 GTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGA GTGTTCACTCGAGTCTCCGCCTTCATCGGCTGGATTGAGGA < 41bp 1 0.402068796212421 1 0.852089285850525 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336329 chr1:22336337 nonsynonymous SNV 0.898 0 29 hm5C_associated_SNPs_24469 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 14bp
chr1 22336337 22336337 1 + A G KIRC 22336332 + 22336312 22336352 41 TTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGT TTCACTCGAGTCTCCGCCTTCATCGGCTGGATTGAGGAGGT < 41bp 1 0.432657719092541 1 0.34706449508667 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336332 chr1:22336337 nonsynonymous SNV 0.898 0 26 hm5C_associated_SNPs_24470 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 14bp
chr1 22336337 22336337 1 + A G KIRC 22336335 + 22336315 22336355 41 ACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGTGAG ACTCGAGTCTCCGCCTTCATCGGCTGGATTGAGGAGGTGAG < 41bp 1 0.769986624888538 1 0.748510956764221 experiment 0.460026750222924 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336335 chr1:22336337 nonsynonymous SNV 0.898 0 23 hm5C_associated_SNPs_24471 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 14bp
chr21 45736400 45736400 1 + G A KIRC 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCAGA < 41bp 1 0.372815602201313 1 0.252724230289459 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736400 nonsynonymous SNV 0.689 5 39 hm5C_associated_SNPs_24475 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 86bp
chr21 45736400 45736400 1 + G A KIRC 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCAGA < 41bp 1 0.372815602201313 1 0.252724230289459 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736400 nonsynonymous SNV 0.689 5 39 hm5C_associated_SNPs_24475 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 8bp
chr21 45736400 45736400 1 + G A KIRC 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCAGATC < 41bp 1 0.0757374825055676 1 0.0883206725120544 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736400 nonsynonymous SNV 0.689 5 37 hm5C_associated_SNPs_24476 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 86bp
chr21 45736400 45736400 1 + G A KIRC 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCAGATC < 41bp 1 0.0757374825055676 1 0.0883206725120544 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736400 nonsynonymous SNV 0.689 5 37 hm5C_associated_SNPs_24476 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 8bp
chr21 45736400 45736400 1 + G A KIRC 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCAGATCC < 41bp 1 0.073185315028227 1 0.0757906138896942 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736400 nonsynonymous SNV 0.689 5 36 hm5C_associated_SNPs_24477 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 86bp
chr21 45736400 45736400 1 + G A KIRC 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCAGATCC < 41bp 1 0.073185315028227 1 0.0757906138896942 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736400 nonsynonymous SNV 0.689 5 36 hm5C_associated_SNPs_24477 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 8bp
chr21 45736400 45736400 1 + G A KIRC 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCAGATCCT < 41bp 1 0.35002351965199 1 0.325504958629608 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736400 nonsynonymous SNV 0.689 5 35 hm5C_associated_SNPs_24478 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 86bp
chr21 45736400 45736400 1 + G A KIRC 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCAGATCCT < 41bp 1 0.35002351965199 1 0.325504958629608 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736400 nonsynonymous SNV 0.689 5 35 hm5C_associated_SNPs_24478 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 8bp
chr12 53685805 53685805 1 + T C KIRC 53685807 + 53685787 53685827 41 GGGAAAGCATGCCCAGCCTCCAAGCACTGCCTGTCACCCGG GGGAAAGCATGCCCAGCCCCCAAGCACTGCCTGTCACCCGG < 41bp 1 0.326430264780642 1 0.454618752002716 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53685807 chr12:53685805 nonsynonymous SNV 0.928 4 19 hm5C_associated_SNPs_24485 0 0 1 0 2 ESPL1 chr12:53685768 3'AG 53685768 Downstream 38bp
chr12 53685805 53685805 1 + T C KIRC 53685807 + 53685787 53685827 41 GGGAAAGCATGCCCAGCCTCCAAGCACTGCCTGTCACCCGG GGGAAAGCATGCCCAGCCCCCAAGCACTGCCTGTCACCCGG < 41bp 1 0.326430264780642 1 0.454618752002716 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53685807 chr12:53685805 nonsynonymous SNV 0.928 4 19 hm5C_associated_SNPs_24485 0 0 1 0 2 ESPL1 chr12:53685872 5'GT 53685872 Upstream 68bp
chr2 11312070 11312070 1 + G A KIRC 11312065 + 11312045 11312085 41 AAACAGAATCTATGTACTTTCATCAGCGCGGCCAGTAAGTT AAACAGAATCTATGTACTTTCATCAACGCGGCCAGTAAGTT < 41bp 1 0.500488593957338 1 0.187702029943466 experiment 0.999022812085324 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11312065 chr2:11312070 nonsynonymous SNV 0.499 3 26 hm5C_associated_SNPs_24486 0 0 0 0 1 PQLC3 chr2:11312051 3'AG 11312051 Downstream 20bp
chr2 61336340 61336340 1 + G C KIRC 61336344 + 61336324 61336364 41 TAACTTAGAAACAACAGTCACTGTTTTCAGAAGAAGAAGAA TAACTTAGAAACAACACTCACTGTTTTCAGAAGAAGAAGAA < 41bp 1 0.100906821038059 1 0.0709719955921173 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIAA1841 ENSG00000162929 CDS Human protein_coding chr2:61336344 chr2:61336340 nonsynonymous SNV 0.892 4 17 hm5C_associated_SNPs_24487 0 0 1 0 2 KIAA1841 chr2:61336332 3'AG 61336332 Downstream 9bp
chr2 61336340 61336340 1 + G C KIRC 61336344 + 61336324 61336364 41 TAACTTAGAAACAACAGTCACTGTTTTCAGAAGAAGAAGAA TAACTTAGAAACAACACTCACTGTTTTCAGAAGAAGAAGAA < 41bp 1 0.100906821038059 1 0.0709719955921173 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIAA1841 ENSG00000162929 CDS Human protein_coding chr2:61336344 chr2:61336340 nonsynonymous SNV 0.892 4 17 hm5C_associated_SNPs_24487 0 0 1 0 2 KIAA1841 chr2:61336431 5'GT 61336431 Upstream 92bp
chr8 145735861 145735861 1 + C A KIRC 145735855 + 145735835 145735875 41 GTGGTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTT GTGGTCTGCTCCATCGCTGGCTCCTCACTGGGTGGGACCTT < 41bp 1 0.269319085902985 1 0.0613039135932922 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735855 chr8:145735861 synonymous SNV . 0 27 hm5C_associated_SNPs_24488 0 0 1 0 1 MFSD3 chr8:145735890 5'GT 145735890 Upstream 30bp
chr8 145735861 145735861 1 + C A KIRC 145735858 + 145735838 145735878 41 GTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTTGCT GTCTGCTCCATCGCTGGCTCCTCACTGGGTGGGACCTTGCT < 41bp 1 0.147475765664536 1 0.183699458837509 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735858 chr8:145735861 synonymous SNV . 0 24 hm5C_associated_SNPs_24489 0 0 1 0 1 MFSD3 chr8:145735890 5'GT 145735890 Upstream 30bp
chr20 62373331 62373331 1 + T A KIRC 62373328 + 62373308 62373348 41 GACCTGGCCAGTGACCAGTCCTCTCCGTCCACCCCGTCACC GACCTGGCCAGTGACCAGTCCTCACCGTCCACCCCGTCACC < 41bp 1 0.138852344295956 1 0.056773841381073 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62373328 chr20:62373331 synonymous SNV . 0 24 hm5C_associated_SNPs_24490 0 0 1 0 1 SLC2A4RG chr20:62373409 5'GT 62373409 Upstream 79bp
chr14 35761756 35761756 1 + T C KIRC 35761743 + 35761723 35761763 41 CCATTTTTTCACCCGAGGGTCGGCTCTACCAAGTAGGTGAG CCATTTTTTCACCCGAGGGTCGGCTCTACCAAGCAGGTGAG < 41bp 1 0.378486562476442 1 0.182581543922424 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PSMA6 ENSG00000100902 CDS Human protein_coding chr14:35761743 chr14:35761756 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_24492 0 0 1 0 2 PSMA6 chr14:35761758 5'GT 35761758 Upstream 3bp
chr14 35761756 35761756 1 + T C KIRC 35761743 + 35761723 35761763 41 CCATTTTTTCACCCGAGGGTCGGCTCTACCAAGTAGGTGAG CCATTTTTTCACCCGAGGGTCGGCTCTACCAAGCAGGTGAG < 41bp 1 0.378486562476442 1 0.182581543922424 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PSMA6 ENSG00000100902 CDS Human protein_coding chr14:35761743 chr14:35761756 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_24492 0 0 1 0 2 PSMA6 chr14:35761806 5'GT 35761806 Upstream 51bp
chr8 104438314 104438314 1 + A G KIRC 104438295 + 104438275 104438315 41 TATTTCTAGGTTGGTGATGACAAAACTGTGAAGCAGTGGAA TATTTCTAGGTTGGTGATGACAAAACTGTGAAGCAGTGGGA < 41bp 1 0.612647031768385 1 0.505901634693146 experiment 0.774705936463229 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438295 chr8:104438314 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_24493 0 0 1 0 2 DCAF13 chr8:104438284 3'AG 104438284 Downstream 31bp
chr8 104438314 104438314 1 + A G KIRC 104438295 + 104438275 104438315 41 TATTTCTAGGTTGGTGATGACAAAACTGTGAAGCAGTGGAA TATTTCTAGGTTGGTGATGACAAAACTGTGAAGCAGTGGGA < 41bp 1 0.612647031768385 1 0.505901634693146 experiment 0.774705936463229 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438295 chr8:104438314 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_24493 0 0 1 0 2 DCAF13 chr8:104438373 5'GT 104438373 Upstream 60bp
chr8 104438314 104438314 1 + A G KIRC 104438308 + 104438288 104438328 41 GTGATGACAAAACTGTGAAGCAGTGGAAAATGGATGGGCCA GTGATGACAAAACTGTGAAGCAGTGGGAAATGGATGGGCCA < 41bp 1 0.424191249927372 1 0.539426386356354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438308 chr8:104438314 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_24494 0 0 1 0 2 DCAF13 chr8:104438284 3'AG 104438284 Downstream 31bp
chr8 104438314 104438314 1 + A G KIRC 104438308 + 104438288 104438328 41 GTGATGACAAAACTGTGAAGCAGTGGAAAATGGATGGGCCA GTGATGACAAAACTGTGAAGCAGTGGGAAATGGATGGGCCA < 41bp 1 0.424191249927372 1 0.539426386356354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438308 chr8:104438314 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_24494 0 0 1 0 2 DCAF13 chr8:104438373 5'GT 104438373 Upstream 60bp
chr8 104438314 104438314 1 + A G KIRC 104438331 + 104438311 104438351 41 TGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCC TGGGAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCC < 41bp 1 0.535740767052279 1 0.398322969675064 experiment 0.928518465895442 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438331 chr8:104438314 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_24495 0 0 1 0 2 DCAF13 chr8:104438284 3'AG 104438284 Downstream 31bp
chr8 104438314 104438314 1 + A G KIRC 104438331 + 104438311 104438351 41 TGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCC TGGGAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCC < 41bp 1 0.535740767052279 1 0.398322969675064 experiment 0.928518465895442 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438331 chr8:104438314 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_24495 0 0 1 0 2 DCAF13 chr8:104438373 5'GT 104438373 Upstream 60bp
chr17 4800542 4800542 1 + A C KIRC 4800528 + 4800508 4800548 41 GCCTCAGTCCGCTCTGGGGGCAGCAGCCAAGTTTACTTCAT GCCTCAGTCCGCTCTGGGGGCAGCAGCCAAGTTTCCTTCAT < 41bp 1 0.600378724753829 1 0.367748826742172 experiment 0.799242550492343 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4800528 chr17:4800542 nonsynonymous SNV 1.000 5 35 hm5C_associated_SNPs_24496 0 0 1 0 1 MINK1 chr17:4800499 3'AG 4800499 Downstream 44bp
chr17 4800542 4800542 1 + A C KIRC 4800531 + 4800511 4800551 41 TCAGTCCGCTCTGGGGGCAGCAGCCAAGTTTACTTCATGAC TCAGTCCGCTCTGGGGGCAGCAGCCAAGTTTCCTTCATGAC < 41bp 1 0.129293966716447 1 0.371016412973404 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4800531 chr17:4800542 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_24497 0 0 1 0 1 MINK1 chr17:4800499 3'AG 4800499 Downstream 44bp
chr17 59161835 59161835 1 + C G KIRC 59161840 + 59161820 59161860 41 CATTGCAGGATCCAGCCAGTCCGCTCTGACCCCGTCAGCAT CATTGCAGGATCCAGGCAGTCCGCTCTGACCCCGTCAGCAT < 41bp 1 0.29642758233638 1 0.158336400985718 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BCAS3 ENSG00000141376 CDS Human protein_coding chr17:59161840 chr17:59161835 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_24498 0 0 1 0 2 BCAS3 chr17:59161828 3'AG 59161828 Downstream 8bp
chr17 59161835 59161835 1 + C G KIRC 59161840 + 59161820 59161860 41 CATTGCAGGATCCAGCCAGTCCGCTCTGACCCCGTCAGCAT CATTGCAGGATCCAGGCAGTCCGCTCTGACCCCGTCAGCAT < 41bp 1 0.29642758233638 1 0.158336400985718 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BCAS3 ENSG00000141376 CDS Human protein_coding chr17:59161840 chr17:59161835 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_24498 0 0 1 0 2 BCAS3 chr17:59161925 5'GT 59161925 Upstream 91bp
chr2 62934347 62934347 1 + A G KIRC 62934334 + 62934314 62934354 41 TTGACTGATCATCATGGCTTCAGTTTGGAAGAGACTGCAGC TTGACTGATCATCATGGCTTCAGTTTGGAAGAGGCTGCAGC < 41bp 1 0.116811537938613 1 0.0460072755813599 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EHBP1 ENSG00000115504 CDS Human protein_coding chr2:62934334 chr2:62934347 synonymous SNV . 0 34 hm5C_associated_SNPs_24499 0 0 1 0 1 EHBP1 chr2:62934430 5'GT 62934430 Upstream 84bp
chr17 37360863 37360863 1 + A T KIRC 37360846 + 37360826 37360866 41 CCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCATCA CCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCTTCA < 41bp 1 0.303567567799894 1 0.253100156784058 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360846 chr17:37360863 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_24502 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 86bp
chr17 37360863 37360863 1 + A T KIRC 37360862 + 37360842 37360882 41 CAGGCCAAGAAGGAGGAGATCATCAAGACTTTATCCAAGGA CAGGCCAAGAAGGAGGAGATCTTCAAGACTTTATCCAAGGA < 41bp 1 0.526723648229797 1 0.212976187467575 experiment 0.946552703540407 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360862 chr17:37360863 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_24503 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 86bp
chr17 37360863 37360863 1 + A T KIRC 37360876 + 37360856 37360896 41 GGAGATCATCAAGACTTTATCCAAGGAGGAAGAGACCAAGA GGAGATCTTCAAGACTTTATCCAAGGAGGAAGAGACCAAGA < 41bp 1 0.51562382429696 1 0.908617794513702 experiment 0.968752351406081 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360876 chr17:37360863 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_24504 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 86bp
chr9 80915578 80915578 1 + G T KIRC 80915575 + 80915555 80915595 41 AAGGAGTTGGCATTAGTGTTCTTGGTAAGATTTACTTTTGA AAGGAGTTGGCATTAGTGTTCTTTGTAAGATTTACTTTTGA < 41bp 1 0.131040962010975 1 0.272375226020813 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80915575 chr9:80915578 stopgain 0.995 1 24 hm5C_associated_SNPs_24505 0 0 1 0 2 PSAT1 chr9:80915518 3'AG 80915518 Downstream 61bp
chr9 80915578 80915578 1 + G T KIRC 80915575 + 80915555 80915595 41 AAGGAGTTGGCATTAGTGTTCTTGGTAAGATTTACTTTTGA AAGGAGTTGGCATTAGTGTTCTTTGTAAGATTTACTTTTGA < 41bp 1 0.131040962010975 1 0.272375226020813 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80915575 chr9:80915578 stopgain 0.995 1 24 hm5C_associated_SNPs_24505 0 0 1 0 2 PSAT1 chr9:80915578 5'GT 80915578 Upstream 1bp
chr19 35749930 35749930 1 + G A KIRC 35749925 + 35749905 35749945 41 CCGTGGTCTCAGCCCAGGACCTCCAGGGGAACAATGAGGCC CCGTGGTCTCAGCCCAGGACCTCCAAGGGAACAATGAGGCC < 41bp 1 0.725476928834811 1 0.901782751083374 experiment 0.549046142330379 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35749925 chr19:35749930 synonymous SNV . 0 26 hm5C_associated_SNPs_24506 0 0 1 0 2 LSR chr19:35749848 3'AG 35749848 Downstream 83bp
chr19 35749930 35749930 1 + G A KIRC 35749925 + 35749905 35749945 41 CCGTGGTCTCAGCCCAGGACCTCCAGGGGAACAATGAGGCC CCGTGGTCTCAGCCCAGGACCTCCAAGGGAACAATGAGGCC < 41bp 1 0.725476928834811 1 0.901782751083374 experiment 0.549046142330379 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35749925 chr19:35749930 synonymous SNV . 0 26 hm5C_associated_SNPs_24506 0 0 1 0 2 LSR chr19:35749967 5'GT 35749967 Upstream 38bp
chr20 46256718 46256718 1 + A T KIRC 46256733 + 46256713 46256753 41 GAAAGAACATTTCCATCAAACCCTGAGAGCTTTATTACCAG GAAAGTACATTTCCATCAAACCCTGAGAGCTTTATTACCAG < 41bp 1 0.12220628282613 1 0.170586556196213 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCOA3 ENSG00000124151 CDS Human protein_coding chr20:46256733 chr20:46256718 nonsynonymous SNV 0.881 4 6 hm5C_associated_SNPs_24507 0 0 1 0 2 NCOA3 chr20:46256666 3'AG 46256666 Downstream 53bp
chr20 46256718 46256718 1 + A T KIRC 46256733 + 46256713 46256753 41 GAAAGAACATTTCCATCAAACCCTGAGAGCTTTATTACCAG GAAAGTACATTTCCATCAAACCCTGAGAGCTTTATTACCAG < 41bp 1 0.12220628282613 1 0.170586556196213 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCOA3 ENSG00000124151 CDS Human protein_coding chr20:46256733 chr20:46256718 nonsynonymous SNV 0.881 4 6 hm5C_associated_SNPs_24507 0 0 1 0 2 NCOA3 chr20:46256767 5'GT 46256767 Upstream 50bp
chr15 64448267 64448267 1 - G A KIRC 64448264 - 64448244 64448284 41 GTGATCATCGCAGACTGCGGCAAGATCGAGGTGGAGAAGCC GTGATCATCGCAGACTGTGGCAAGATCGAGGTGGAGAAGCC < 41bp 1 0.791600047536664 1 0.80081307888031 experiment 0.416799904926673 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PPIB ENSG00000166794 CDS Human protein_coding chr15:64448264 chr15:64448267 synonymous SNV . 0 18 hm5C_associated_SNPs_24509 0 0 1 0 1 PPIB chr15:64448344 3'AG 64448344 Downstream 78bp
chr15 64448267 64448267 1 - G A KIRC 64448270 - 64448250 64448290 41 AAGGATGTGATCATCGCAGACTGCGGCAAGATCGAGGTGGA AAGGATGTGATCATCGCAGACTGTGGCAAGATCGAGGTGGA < 41bp 1 0.495824389059014 1 0.334411561489105 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPIB ENSG00000166794 CDS Human protein_coding chr15:64448270 chr15:64448267 synonymous SNV . 0 24 hm5C_associated_SNPs_24510 0 0 1 0 1 PPIB chr15:64448344 3'AG 64448344 Downstream 78bp
chr15 64448267 64448267 1 - G A KIRC 64448276 - 64448256 64448296 41 CCCCTGAAGGATGTGATCATCGCAGACTGCGGCAAGATCGA CCCCTGAAGGATGTGATCATCGCAGACTGTGGCAAGATCGA < 41bp 1 0.682241964282321 1 0.545965909957886 experiment 0.635516071435357 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PPIB ENSG00000166794 CDS Human protein_coding chr15:64448276 chr15:64448267 synonymous SNV . 0 30 hm5C_associated_SNPs_24511 0 0 1 0 1 PPIB chr15:64448344 3'AG 64448344 Downstream 78bp
chr15 64448267 64448267 1 - G A KIRC 64448279 - 64448259 64448299 41 AAACCCCTGAAGGATGTGATCATCGCAGACTGCGGCAAGAT AAACCCCTGAAGGATGTGATCATCGCAGACTGTGGCAAGAT < 41bp 1 0.412459849313763 1 0.0365983843803406 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PPIB ENSG00000166794 CDS Human protein_coding chr15:64448279 chr15:64448267 synonymous SNV . 0 33 hm5C_associated_SNPs_24512 0 0 1 0 1 PPIB chr15:64448344 3'AG 64448344 Downstream 78bp
chr15 64448268 64448268 1 - C T KIRC 64448264 - 64448244 64448284 41 GTGATCATCGCAGACTGCGGCAAGATCGAGGTGGAGAAGCC GTGATCATCGCAGACTACGGCAAGATCGAGGTGGAGAAGCC < 41bp 1 0.753208066662241 1 0.480468392372131 experiment 0.493583866675517 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PPIB ENSG00000166794 CDS Human protein_coding chr15:64448264 chr15:64448268 nonsynonymous SNV 0.934 2 17 hm5C_associated_SNPs_24513 0 0 1 0 1 PPIB chr15:64448344 3'AG 64448344 Downstream 77bp
chr15 64448268 64448268 1 - C T KIRC 64448270 - 64448250 64448290 41 AAGGATGTGATCATCGCAGACTGCGGCAAGATCGAGGTGGA AAGGATGTGATCATCGCAGACTACGGCAAGATCGAGGTGGA < 41bp 1 0.592861425248335 1 0.259901285171509 experiment 0.814277149503331 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPIB ENSG00000166794 CDS Human protein_coding chr15:64448270 chr15:64448268 nonsynonymous SNV 0.934 2 23 hm5C_associated_SNPs_24514 0 0 1 0 1 PPIB chr15:64448344 3'AG 64448344 Downstream 77bp
chr15 64448268 64448268 1 - C T KIRC 64448276 - 64448256 64448296 41 CCCCTGAAGGATGTGATCATCGCAGACTGCGGCAAGATCGA CCCCTGAAGGATGTGATCATCGCAGACTACGGCAAGATCGA < 41bp 1 0.70772184681778 1 0.618352174758911 experiment 0.58455630636444 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PPIB ENSG00000166794 CDS Human protein_coding chr15:64448276 chr15:64448268 nonsynonymous SNV 0.934 2 29 hm5C_associated_SNPs_24515 0 0 1 0 1 PPIB chr15:64448344 3'AG 64448344 Downstream 77bp
chr15 64448268 64448268 1 - C T KIRC 64448279 - 64448259 64448299 41 AAACCCCTGAAGGATGTGATCATCGCAGACTGCGGCAAGAT AAACCCCTGAAGGATGTGATCATCGCAGACTACGGCAAGAT < 41bp 1 0.396237203308394 1 0.051296591758728 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PPIB ENSG00000166794 CDS Human protein_coding chr15:64448279 chr15:64448268 nonsynonymous SNV 0.934 2 32 hm5C_associated_SNPs_24516 0 0 1 0 1 PPIB chr15:64448344 3'AG 64448344 Downstream 77bp
chr7 138944050 138944050 1 + A G KIRC 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TTGAGATGAAGAGGCGGAAGCGGAAAGAGGAAGGGGAAAAG < 41bp 1 0.591281417887649 1 0.641478538513184 experiment 0.817437164224702 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944050 nonsynonymous SNV 0.997 2 13 hm5C_associated_SNPs_24517 0 0 1 0 2 UBN2 chr7:138944013 3'AG 138944013 Downstream 38bp
chr7 138944050 138944050 1 + A G KIRC 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TTGAGATGAAGAGGCGGAAGCGGAAAGAGGAAGGGGAAAAG < 41bp 1 0.591281417887649 1 0.641478538513184 experiment 0.817437164224702 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944050 nonsynonymous SNV 0.997 2 13 hm5C_associated_SNPs_24517 0 0 1 0 2 UBN2 chr7:138944116 5'GT 138944116 Upstream 67bp
chr2 29006790 29006790 1 + C A KIRC 29006781 + 29006761 29006801 41 TTTTATTTATAGGATTGTCACCAGACCTGCAATCTATGGAG TTTTATTTATAGGATTGTCACCAGACCTGAAATCTATGGAG < 41bp 1 0.559922568334875 1 0.70201176404953 experiment 0.88015486333025 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1CB ENSG00000213639 CDS Human protein_coding chr2:29006781 chr2:29006790 nonsynonymous SNV 0.997 2 30 hm5C_associated_SNPs_24518 0 0 1 0 2 PPP1CB chr2:29006773 3'AG 29006773 Downstream 18bp
chr2 29006790 29006790 1 + C A KIRC 29006781 + 29006761 29006801 41 TTTTATTTATAGGATTGTCACCAGACCTGCAATCTATGGAG TTTTATTTATAGGATTGTCACCAGACCTGAAATCTATGGAG < 41bp 1 0.559922568334875 1 0.70201176404953 experiment 0.88015486333025 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1CB ENSG00000213639 CDS Human protein_coding chr2:29006781 chr2:29006790 nonsynonymous SNV 0.997 2 30 hm5C_associated_SNPs_24518 0 0 1 0 2 PPP1CB chr2:29006844 5'GT 29006844 Upstream 55bp
chr12 51449970 51449970 1 + T G KIRC 51449969 + 51449949 51449989 41 CAATACATGATATCTTGGCTCTGAGAGAGTGTTTCTCTAAC CAATACATGATATCTTGGCTCGGAGAGAGTGTTTCTCTAAC < 41bp 1 0.647243546939397 1 0.545406341552734 experiment 0.705512906121206 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51449969 chr12:51449970 nonsynonymous SNV 0.147 3 22 hm5C_associated_SNPs_24519 0 0 1 0 2 LETMD1 chr12:51449927 3'AG 51449927 Downstream 44bp
chr12 51449970 51449970 1 + T G KIRC 51449969 + 51449949 51449989 41 CAATACATGATATCTTGGCTCTGAGAGAGTGTTTCTCTAAC CAATACATGATATCTTGGCTCGGAGAGAGTGTTTCTCTAAC < 41bp 1 0.647243546939397 1 0.545406341552734 experiment 0.705512906121206 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51449969 chr12:51449970 nonsynonymous SNV 0.147 3 22 hm5C_associated_SNPs_24519 0 0 1 0 2 LETMD1 chr12:51450028 5'GT 51450028 Upstream 59bp
chr1 155029456 155029456 1 + G T KIRC 155029461 + 155029441 155029481 41 AGCATCCTGGGAGTCGCCTCCTCCATAGCCCATGAGTTGGG AGCATCCTGGGAGTCTCCTCCTCCATAGCCCATGAGTTGGG < 41bp 1 0.798807634945763 1 0.98270171880722 experiment 0.402384730108474 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155029461 chr1:155029456 nonsynonymous SNV 0.459 3 16 hm5C_associated_SNPs_24520 0 0 1 0 1 ADAM15 chr1:155029429 3'AG 155029429 Downstream 28bp
chr11 763815 763815 1 + G T KIRC 763823 + 763803 763843 41 ATTGTCATGGGCGCCTCCTTCCGCAACACGGGCGAGATCAA ATTGTCATGGGCTCCTCCTTCCGCAACACGGGCGAGATCAA < 41bp 1 0.736368408618511 1 0.749642431735992 experiment 0.527263182762979 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TALDO1 ENSG00000177156 CDS Human protein_coding chr11:763823 chr11:763815 nonsynonymous SNV 0.999 5 13 hm5C_associated_SNPs_24521 0 0 1 0 1 TALDO1 chr11:763747 3'AG 763747 Downstream 69bp
chr11 70201752 70201752 1 + G T KIRC 70201745 + 70201725 70201765 41 TCCGTTTTCTTTCCTCGAAGCTCCACAGGCTCCCAGGATGG TCCGTTTTCTTTCCTCGAAGCTCCACATGCTCCCAGGATGG < 41bp 1 0.475998768301955 1 0.655317425727844 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70201745 chr11:70201752 nonsynonymous SNV 0.999 2 28 hm5C_associated_SNPs_24522 0 0 1 0 1 PPFIA1 chr11:70201745 3'AG 70201745 Downstream 8bp
chr3 41275110 41275110 1 + A G KIRC 41275104 + 41275084 41275124 41 TCACCTGTGCAGCTGGAATTCTTTCTAACCTCACTTGCAAT TCACCTGTGCAGCTGGAATTCTTTCTGACCTCACTTGCAAT < 41bp 1 0.103065333790202 1 0.102388143539429 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41275104 chr3:41275110 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_24523 0 0 1 0 1 CTNNB1 chr3:41275020 3'AG 41275020 Downstream 91bp
chr1 113240981 113240981 1 + C A KIRC 113240962 + 113240942 113240982 41 AAAGATGAGCGTGAAGGCAACAGCCCATCCTTCTTCAACCC AAAGATGAGCGTGAAGGCAACAGCCCATCCTTCTTCAACAC < 41bp 1 0.221679863398065 1 0.443131506443024 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113240962 chr1:113240981 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_24524 0 0 1 0 1 MOV10 chr1:113240909 3'AG 113240909 Downstream 73bp
chr7 142459716 142459716 1 + C A KIRC 142459696 + 142459676 142459716 41 TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCA < 41bp 1 0.394035497494748 1 0.350308358669281 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459696 chr7:142459716 nonsynonymous SNV 0.007 0 41 hm5C_associated_SNPs_24525 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 92bp
chr7 142459716 142459716 1 + C A KIRC 142459703 + 142459683 142459723 41 TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGA TTCATCAATGCAGCCAAGATCATCCGCCACCCCAAATACGA < 41bp 1 0.275916928585573 1 0.0872743427753448 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459703 chr7:142459716 nonsynonymous SNV 0.007 0 34 hm5C_associated_SNPs_24526 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 92bp
chr7 142459716 142459716 1 + C A KIRC 142459706 + 142459686 142459726 41 ATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAG ATCAATGCAGCCAAGATCATCCGCCACCCCAAATACGACAG < 41bp 1 0.319959132636898 1 0.359526038169861 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459706 chr7:142459716 nonsynonymous SNV 0.007 0 31 hm5C_associated_SNPs_24527 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 92bp
chr7 142459716 142459716 1 + C A KIRC 142459707 + 142459687 142459727 41 TCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGG TCAATGCAGCCAAGATCATCCGCCACCCCAAATACGACAGG < 41bp 1 0.769813259836108 1 0.287877857685089 experiment 0.460373480327784 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459707 chr7:142459716 nonsynonymous SNV 0.007 0 30 hm5C_associated_SNPs_24528 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 92bp
chr7 142459716 142459716 1 + C A KIRC 142459709 + 142459689 142459729 41 AATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA AATGCAGCCAAGATCATCCGCCACCCCAAATACGACAGGAA < 41bp 1 0.108805553083593 1 0.0809111595153809 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459709 chr7:142459716 nonsynonymous SNV 0.007 0 28 hm5C_associated_SNPs_24529 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 92bp
chr7 142459716 142459716 1 + C A KIRC 142459710 + 142459690 142459730 41 ATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG ATGCAGCCAAGATCATCCGCCACCCCAAATACGACAGGAAG < 41bp 1 0.213917582442503 1 0.132805168628693 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459710 chr7:142459716 nonsynonymous SNV 0.007 0 27 hm5C_associated_SNPs_24530 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 92bp
chr7 142459716 142459716 1 + C A KIRC 142459712 + 142459692 142459732 41 GCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC GCAGCCAAGATCATCCGCCACCCCAAATACGACAGGAAGAC < 41bp 1 0.460464968704805 1 0.280278027057648 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459712 chr7:142459716 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_24531 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 92bp
chr7 142459716 142459716 1 + C A KIRC 142459713 + 142459693 142459733 41 CAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT CAGCCAAGATCATCCGCCACCCCAAATACGACAGGAAGACT < 41bp 1 0.405418329001828 1 0.671591877937317 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459713 chr7:142459716 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_24532 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 92bp
chr7 142459716 142459716 1 + C A KIRC 142459714 + 142459694 142459734 41 AGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC AGCCAAGATCATCCGCCACCCCAAATACGACAGGAAGACTC < 41bp 1 0.429611167665915 1 0.42525789141655 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459714 chr7:142459716 nonsynonymous SNV 0.007 0 23 hm5C_associated_SNPs_24533 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 92bp
chr7 142459716 142459716 1 + C A KIRC 142459715 + 142459695 142459735 41 GCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCT GCCAAGATCATCCGCCACCCCAAATACGACAGGAAGACTCT < 41bp 1 0.463589792014674 1 0.390525251626968 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459715 chr7:142459716 nonsynonymous SNV 0.007 0 22 hm5C_associated_SNPs_24534 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 92bp
chr7 142459716 142459716 1 + C A KIRC 142459732 + 142459712 142459752 41 CCCCCAATACGACAGGAAGACTCTGAACAATGACATCATGT CCCCAAATACGACAGGAAGACTCTGAACAATGACATCATGT < 41bp 1 0.53016480230308 1 0.121883362531662 experiment 0.93967039539384 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459732 chr7:142459716 nonsynonymous SNV 0.007 0 5 hm5C_associated_SNPs_24535 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 92bp
chr9 139228923 139228923 1 + G C KIRC 139228915 + 139228895 139228935 41 TCTGCACAGGATGGAGGCGTCCTGCCTAGAGCTGGCGCTGG TCTGCACAGGATGGAGGCGTCCTGCCTACAGCTGGCGCTGG < 41bp 1 0.14743600698188 1 0.0742316246032715 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139228915 chr9:139228923 nonsynonymous SNV 0.853 2 29 hm5C_associated_SNPs_24536 0 0 1 0 1 GPSM1 chr9:139228904 3'AG 139228904 Downstream 20bp
chr9 139228923 139228923 1 + G C KIRC 139228916 + 139228896 139228936 41 CTGCACAGGATGGAGGCGTCCTGCCTAGAGCTGGCGCTGGA CTGCACAGGATGGAGGCGTCCTGCCTACAGCTGGCGCTGGA < 41bp 1 0.461696078336466 1 0.109604388475418 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139228916 chr9:139228923 nonsynonymous SNV 0.853 2 28 hm5C_associated_SNPs_24537 0 0 1 0 1 GPSM1 chr9:139228904 3'AG 139228904 Downstream 20bp
chr5 145858117 145858117 1 + A G KIRC 145858103 + 145858083 145858123 41 GGTCTTCTTTTATAATCCCACCACTCGTCTTTCTATGTGGG GGTCTTCTTTTATAATCCCACCACTCGTCTTTCTGTGTGGG < 41bp 1 0.0785328615178042 1 0.0871165096759796 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145858103 chr5:145858117 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_24538 0 0 1 0 2 TCERG1 chr5:145858056 3'AG 145858056 Downstream 62bp
chr5 145858117 145858117 1 + A G KIRC 145858103 + 145858083 145858123 41 GGTCTTCTTTTATAATCCCACCACTCGTCTTTCTATGTGGG GGTCTTCTTTTATAATCCCACCACTCGTCTTTCTGTGTGGG < 41bp 1 0.0785328615178042 1 0.0871165096759796 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145858103 chr5:145858117 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_24538 0 0 1 0 2 TCERG1 chr5:145858216 5'GT 145858216 Upstream 100bp
chr12 73012774 73012774 1 + C A KIRC 73012771 + 73012751 73012791 41 CTGCCAGCCGAGCTCTTTATCCTCTAGATAAATTACTGGAC CTGCCAGCCGAGCTCTTTATCCTATAGATAAATTACTGGAC < 41bp 1 0.0807869641149957 1 0.196199715137482 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRHDE ENSG00000072657 CDS Human protein_coding chr12:73012771 chr12:73012774 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_24539 0 0 0 0 1 TRHDE chr12:73012818 5'GT 73012818 Upstream 45bp
chr2 128185973 128185973 1 + C A KIRC 128185991 + 128185971 128186011 41 GACCTGGACATCAAGGAGGTCTTCGTCCACCCCAACTACAG GAACTGGACATCAAGGAGGTCTTCGTCCACCCCAACTACAG < 41bp 1 0.242039918619063 1 0.059495747089386 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128185991 chr2:128185973 nonsynonymous SNV 0.462 2 3 hm5C_associated_SNPs_24546 0 0 1 0 1 PROC chr2:128185933 3'AG 128185933 Downstream 41bp
chr7 44796728 44796728 1 + G A KIRC 44796719 + 44796699 44796739 41 GGCGTGTACAGCCGCGGGGGCTACCCTGGGGCCCCCGGCTT GGCGTGTACAGCCGCGGGGGCTACCCTGGAGCCCCCGGCTT < 41bp 1 0.292002233641454 1 0.0974686741828918 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44796719 chr7:44796728 synonymous SNV . 0 30 hm5C_associated_SNPs_24547 0 0 0 0 2 ZMIZ2 chr7:44796642 3'AG 44796642 Downstream 87bp
chr7 44796728 44796728 1 + G A KIRC 44796719 + 44796699 44796739 41 GGCGTGTACAGCCGCGGGGGCTACCCTGGGGCCCCCGGCTT GGCGTGTACAGCCGCGGGGGCTACCCTGGAGCCCCCGGCTT < 41bp 1 0.292002233641454 1 0.0974686741828918 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44796719 chr7:44796728 synonymous SNV . 0 30 hm5C_associated_SNPs_24547 0 0 0 0 2 ZMIZ2 chr7:44796748 5'GT 44796748 Upstream 21bp
chr13 113485756 113485756 1 + G A KIRC 113485767 + 113485747 113485787 41 AGGAGTGCTGCATCGAAGGCCATGTCTACGTGCCCCACGTC AGGAGTGCTACATCGAAGGCCATGTCTACGTGCCCCACGTC < 41bp 1 0.117192112912682 1 0.475701898336411 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP11A ENSG00000068650 CDS Human protein_coding chr13:113485767 chr13:113485756 nonsynonymous SNV 0.998 3 10 hm5C_associated_SNPs_24548 0 0 0 0 1 ATP11A chr13:113485689 3'AG 113485689 Downstream 68bp
chr19 35829090 35829090 1 + G A KIRC 35829100 + 35829080 35829120 41 AACCTTCCACGGTTCAGATCCTCCACTCACCGGCTGTGGAG AACCTTCCACAGTTCAGATCCTCCACTCACCGGCTGTGGAG < 41bp 1 0.682963152487836 1 0.842442870140076 experiment 0.634073695024329 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD22 ENSG00000012124 CDS Human protein_coding chr19:35829100 chr19:35829090 synonymous SNV . 0 11 hm5C_associated_SNPs_24549 0 0 0 0 1 CD22 chr19:35829071 3'AG 35829071 Downstream 20bp
chr17 41154776 41154776 1 + A G KIRC 41154768 + 41154748 41154788 41 CCTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAA CCTGCTCTTAAACGCAAGGCCCGACGGGGGGCCAAGGTCAA < 41bp 1 0.273332075225015 1 0.306369721889496 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL27 ENSG00000131469 CDS Human protein_coding chr17:41154768 chr17:41154776 nonsynonymous SNV 0.964 1 29 hm5C_associated_SNPs_24550 0 0 1 0 2 RPL27 chr17:41154690 3'AG 41154690 Downstream 87bp
chr17 41154776 41154776 1 + A G KIRC 41154768 + 41154748 41154788 41 CCTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAA CCTGCTCTTAAACGCAAGGCCCGACGGGGGGCCAAGGTCAA < 41bp 1 0.273332075225015 1 0.306369721889496 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL27 ENSG00000131469 CDS Human protein_coding chr17:41154768 chr17:41154776 nonsynonymous SNV 0.964 1 29 hm5C_associated_SNPs_24550 0 0 1 0 2 RPL27 chr17:41154800 5'GT 41154800 Upstream 25bp
chr17 41154776 41154776 1 + A G KIRC 41154779 + 41154759 41154799 41 ACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAAGAGA ACGCAAGGCCCGACGGGGGGCCAAGGTCAAGTTTGAAGAGA < 41bp 1 0.393923432925941 1 0.375125110149384 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL27 ENSG00000131469 CDS Human protein_coding chr17:41154779 chr17:41154776 nonsynonymous SNV 0.964 1 18 hm5C_associated_SNPs_24551 0 0 1 0 2 RPL27 chr17:41154690 3'AG 41154690 Downstream 87bp
chr17 41154776 41154776 1 + A G KIRC 41154779 + 41154759 41154799 41 ACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAAGAGA ACGCAAGGCCCGACGGGGGGCCAAGGTCAAGTTTGAAGAGA < 41bp 1 0.393923432925941 1 0.375125110149384 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL27 ENSG00000131469 CDS Human protein_coding chr17:41154779 chr17:41154776 nonsynonymous SNV 0.964 1 18 hm5C_associated_SNPs_24551 0 0 1 0 2 RPL27 chr17:41154800 5'GT 41154800 Upstream 25bp
chrX 7171308 7171308 1 + A G KIRC 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGCATCAAGGCCGAGCATCATCCTGGTGATGGCTGACGA < 41bp 1 0.246227485573662 1 0.0750560760498047 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171308 nonsynonymous SNV 0.167 5 17 hm5C_associated_SNPs_24552 0 0 1 2 1 STS chrX:7171237 3'AG 7171237 Downstream 72bp
chr7 142458523 142458523 1 + T A KIRC 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAA < 41bp 1 0.358091343949067 1 0.718704700469971 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458523 nonsynonymous SNV 0.016 5 41 hm5C_associated_SNPs_24553 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 44bp
chr7 142458523 142458523 1 + T A KIRC 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAA < 41bp 1 0.358091343949067 1 0.718704700469971 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458523 nonsynonymous SNV 0.016 5 41 hm5C_associated_SNPs_24553 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 43bp
chr7 142458523 142458523 1 + T A KIRC 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAACAA < 41bp 1 0.647981246457102 1 0.28491622209549 experiment 0.704037507085797 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458523 nonsynonymous SNV 0.016 5 38 hm5C_associated_SNPs_24554 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 44bp
chr7 142458523 142458523 1 + T A KIRC 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAACAA < 41bp 1 0.647981246457102 1 0.28491622209549 experiment 0.704037507085797 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458523 nonsynonymous SNV 0.016 5 38 hm5C_associated_SNPs_24554 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 43bp
chr7 142458523 142458523 1 + T A KIRC 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGTGGTGGCTCCCTCAACAACGAACAGTG < 41bp 1 0.284848707757664 1 0.212536066770554 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458523 nonsynonymous SNV 0.016 5 29 hm5C_associated_SNPs_24555 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 44bp
chr7 142458523 142458523 1 + T A KIRC 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGTGGTGGCTCCCTCAACAACGAACAGTG < 41bp 1 0.284848707757664 1 0.212536066770554 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458523 nonsynonymous SNV 0.016 5 29 hm5C_associated_SNPs_24555 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 43bp
chr7 142458523 142458523 1 + T A KIRC 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGGTGGCTCCCTCAACAACGAACAGTGGG < 41bp 1 0.0742810308604587 1 0.0609580874443054 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458523 nonsynonymous SNV 0.016 5 27 hm5C_associated_SNPs_24556 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 44bp
chr7 142458523 142458523 1 + T A KIRC 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGGTGGCTCCCTCAACAACGAACAGTGGG < 41bp 1 0.0742810308604587 1 0.0609580874443054 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458523 nonsynonymous SNV 0.016 5 27 hm5C_associated_SNPs_24556 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 43bp
chr7 142458523 142458523 1 + T A KIRC 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGGTGGCTCCCTCAACAACGAACAGTGGGT < 41bp 1 0.130608772664167 1 0.0727872550487518 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458523 nonsynonymous SNV 0.016 5 26 hm5C_associated_SNPs_24557 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 44bp
chr7 142458523 142458523 1 + T A KIRC 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGGTGGCTCCCTCAACAACGAACAGTGGGT < 41bp 1 0.130608772664167 1 0.0727872550487518 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458523 nonsynonymous SNV 0.016 5 26 hm5C_associated_SNPs_24557 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 43bp
chr7 142458523 142458523 1 + T A KIRC 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGGTGGCTCCCTCAACAACGAACAGTGGGTG < 41bp 1 0.718389243491539 1 0.6240593791008 experiment 0.563221513016922 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458523 nonsynonymous SNV 0.016 5 25 hm5C_associated_SNPs_24558 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 44bp
chr7 142458523 142458523 1 + T A KIRC 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGGTGGCTCCCTCAACAACGAACAGTGGGTG < 41bp 1 0.718389243491539 1 0.6240593791008 experiment 0.563221513016922 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458523 nonsynonymous SNV 0.016 5 25 hm5C_associated_SNPs_24558 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 43bp
chr7 142458523 142458523 1 + T A KIRC 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGGTGGCTCCCTCAACAACGAACAGTGGGTGGT < 41bp 1 0.690125852444712 1 0.870777010917664 experiment 0.619748295110575 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458523 nonsynonymous SNV 0.016 5 23 hm5C_associated_SNPs_24559 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 44bp
chr7 142458523 142458523 1 + T A KIRC 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGGTGGCTCCCTCAACAACGAACAGTGGGTGGT < 41bp 1 0.690125852444712 1 0.870777010917664 experiment 0.619748295110575 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458523 nonsynonymous SNV 0.016 5 23 hm5C_associated_SNPs_24559 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 43bp
chr7 142458523 142458523 1 + T A KIRC 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGGTGGCTCCCTCAACAACGAACAGTGGGTGGTATC < 41bp 1 0.654944985572181 1 0.409260511398315 experiment 0.690110028855637 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458523 nonsynonymous SNV 0.016 5 20 hm5C_associated_SNPs_24560 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 44bp
chr7 142458523 142458523 1 + T A KIRC 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGGTGGCTCCCTCAACAACGAACAGTGGGTGGTATC < 41bp 1 0.654944985572181 1 0.409260511398315 experiment 0.690110028855637 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458523 nonsynonymous SNV 0.016 5 20 hm5C_associated_SNPs_24560 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 43bp
chr7 142458523 142458523 1 + T A KIRC 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGCTCCCTCAACAACGAACAGTGGGTGGTATCAGC < 41bp 1 0.389893106177349 1 0.413063168525696 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458523 nonsynonymous SNV 0.016 5 17 hm5C_associated_SNPs_24561 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 44bp
chr7 142458523 142458523 1 + T A KIRC 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGCTCCCTCAACAACGAACAGTGGGTGGTATCAGC < 41bp 1 0.389893106177349 1 0.413063168525696 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458523 nonsynonymous SNV 0.016 5 17 hm5C_associated_SNPs_24561 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 43bp
chr7 142458523 142458523 1 + T A KIRC 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGCTCCCTCAACAACGAACAGTGGGTGGTATCAGCAGGC < 41bp 1 0.465500568824539 1 0.604825079441071 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458523 nonsynonymous SNV 0.016 5 13 hm5C_associated_SNPs_24562 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 44bp
chr7 142458523 142458523 1 + T A KIRC 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGCTCCCTCAACAACGAACAGTGGGTGGTATCAGCAGGC < 41bp 1 0.465500568824539 1 0.604825079441071 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458523 nonsynonymous SNV 0.016 5 13 hm5C_associated_SNPs_24562 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 43bp
chr17 37360793 37360793 1 + C T KIRC 37360781 + 37360761 37360801 41 TTCTCTTCCCTGACCAGTGACCAGGCTGAGGCCCGCAGGTC TTCTCTTCCCTGACCAGTGACCAGGCTGAGGCTCGCAGGTC < 41bp 1 0.47241880323071 1 0.149629026651382 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360781 chr17:37360793 synonymous SNV . 0 33 hm5C_associated_SNPs_24563 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 16bp
chr17 37360793 37360793 1 + C T KIRC 37360796 + 37360776 37360816 41 AGTGACCAGGCTGAGGCCCGCAGGTCTAAGACCAAGGAAGC AGTGACCAGGCTGAGGCTCGCAGGTCTAAGACCAAGGAAGC < 41bp 1 0.790780921046035 1 0.747076272964478 experiment 0.418438157907931 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360796 chr17:37360793 synonymous SNV . 0 18 hm5C_associated_SNPs_24564 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 16bp
chr17 37360793 37360793 1 + C T KIRC 37360801 + 37360781 37360821 41 CCAGGCTGAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCA CCAGGCTGAGGCTCGCAGGTCTAAGACCAAGGAAGCACGCA < 41bp 1 0.477116191748092 1 0.295085310935974 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360801 chr17:37360793 synonymous SNV . 0 13 hm5C_associated_SNPs_24565 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 16bp
chr17 37360793 37360793 1 + C T KIRC 37360807 + 37360787 37360827 41 TGAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCAAGCGCC TGAGGCTCGCAGGTCTAAGACCAAGGAAGCACGCAAGCGCC < 41bp 1 0.507619541857937 1 0.497065484523773 experiment 0.984760916284125 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360807 chr17:37360793 synonymous SNV . 0 7 hm5C_associated_SNPs_24566 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 16bp
chr17 37360793 37360793 1 + C T KIRC 37360808 + 37360788 37360828 41 GAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCAAGCGCCG GAGGCTCGCAGGTCTAAGACCAAGGAAGCACGCAAGCGCCG < 41bp 1 0.783037603988275 1 0.804110705852509 experiment 0.43392479202345 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360808 chr17:37360793 synonymous SNV . 0 6 hm5C_associated_SNPs_24567 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 16bp
chr17 37360846 37360846 1 + C T KIRC 37360862 + 37360842 37360882 41 CAGGCCAAGAAGGAGGAGATCATCAAGACTTTATCCAAGGA CAGGTCAAGAAGGAGGAGATCATCAAGACTTTATCCAAGGA < 41bp 1 0.490614257770311 1 0.122806131839752 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360862 chr17:37360846 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_24568 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 69bp
chr7 130021569 130021569 1 + C T KIRC 130021554 + 130021534 130021574 41 AGCATCCAGGCGGTCAAGATCTTTCTGGAGTCCCACGGCAT AGCATCCAGGCGGTCAAGATCTTTCTGGAGTCCCATGGCAT < 41bp 1 0.12168264218957 1 0.0412469208240509 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021554 chr7:130021569 synonymous SNV . 0 36 hm5C_associated_SNPs_24569 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 99bp
chr7 130021569 130021569 1 + C T KIRC 130021554 + 130021534 130021574 41 AGCATCCAGGCGGTCAAGATCTTTCTGGAGTCCCACGGCAT AGCATCCAGGCGGTCAAGATCTTTCTGGAGTCCCATGGCAT < 41bp 1 0.12168264218957 1 0.0412469208240509 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021554 chr7:130021569 synonymous SNV . 0 36 hm5C_associated_SNPs_24569 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 34bp
chr7 130021569 130021569 1 + C T KIRC 130021565 + 130021545 130021585 41 GGTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGA GGTCAAGATCTTTCTGGAGTCCCATGGCATCAGCTATGAGA < 41bp 1 0.235599382760067 1 0.132916808128357 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021565 chr7:130021569 synonymous SNV . 0 25 hm5C_associated_SNPs_24570 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 99bp
chr7 130021569 130021569 1 + C T KIRC 130021565 + 130021545 130021585 41 GGTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGA GGTCAAGATCTTTCTGGAGTCCCATGGCATCAGCTATGAGA < 41bp 1 0.235599382760067 1 0.132916808128357 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021565 chr7:130021569 synonymous SNV . 0 25 hm5C_associated_SNPs_24570 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 34bp
chr7 130021569 130021569 1 + C T KIRC 130021566 + 130021546 130021586 41 GTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGAC GTCAAGATCTTTCTGGAGTCCCATGGCATCAGCTATGAGAC < 41bp 1 0.193946390813198 1 0.504875481128693 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021566 chr7:130021569 synonymous SNV . 0 24 hm5C_associated_SNPs_24571 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 99bp
chr7 130021569 130021569 1 + C T KIRC 130021566 + 130021546 130021586 41 GTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGAC GTCAAGATCTTTCTGGAGTCCCATGGCATCAGCTATGAGAC < 41bp 1 0.193946390813198 1 0.504875481128693 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021566 chr7:130021569 synonymous SNV . 0 24 hm5C_associated_SNPs_24571 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 34bp
chr7 130021569 130021569 1 + C T KIRC 130021567 + 130021547 130021587 41 TCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACC TCAAGATCTTTCTGGAGTCCCATGGCATCAGCTATGAGACC < 41bp 1 0.468904190824149 1 0.526744425296783 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021567 chr7:130021569 synonymous SNV . 0 23 hm5C_associated_SNPs_24572 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 99bp
chr7 130021569 130021569 1 + C T KIRC 130021567 + 130021547 130021587 41 TCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACC TCAAGATCTTTCTGGAGTCCCATGGCATCAGCTATGAGACC < 41bp 1 0.468904190824149 1 0.526744425296783 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021567 chr7:130021569 synonymous SNV . 0 23 hm5C_associated_SNPs_24572 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 34bp
chr7 130021569 130021569 1 + C T KIRC 130021572 + 130021552 130021592 41 ATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGAT ATCTTTCTGGAGTCCCATGGCATCAGCTATGAGACCATGAT < 41bp 1 0.453410167246014 1 0.552306771278381 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021572 chr7:130021569 synonymous SNV . 0 18 hm5C_associated_SNPs_24573 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 99bp
chr7 130021569 130021569 1 + C T KIRC 130021572 + 130021552 130021592 41 ATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGAT ATCTTTCTGGAGTCCCATGGCATCAGCTATGAGACCATGAT < 41bp 1 0.453410167246014 1 0.552306771278381 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021572 chr7:130021569 synonymous SNV . 0 18 hm5C_associated_SNPs_24573 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 34bp
chr7 130021569 130021569 1 + C T KIRC 130021575 + 130021555 130021595 41 TTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGA TTTCTGGAGTCCCATGGCATCAGCTATGAGACCATGATCGA < 41bp 1 0.677859899275529 1 0.614341139793396 experiment 0.644280201448941 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021575 chr7:130021569 synonymous SNV . 0 15 hm5C_associated_SNPs_24574 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 99bp
chr7 130021569 130021569 1 + C T KIRC 130021575 + 130021555 130021595 41 TTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGA TTTCTGGAGTCCCATGGCATCAGCTATGAGACCATGATCGA < 41bp 1 0.677859899275529 1 0.614341139793396 experiment 0.644280201448941 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021575 chr7:130021569 synonymous SNV . 0 15 hm5C_associated_SNPs_24574 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 34bp
chr7 130021569 130021569 1 + C T KIRC 130021578 + 130021558 130021598 41 CTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGAGGA CTGGAGTCCCATGGCATCAGCTATGAGACCATGATCGAGGA < 41bp 1 0.377913091730865 1 0.105038464069366 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021578 chr7:130021569 synonymous SNV . 0 12 hm5C_associated_SNPs_24575 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 99bp
chr7 130021569 130021569 1 + C T KIRC 130021578 + 130021558 130021598 41 CTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGAGGA CTGGAGTCCCATGGCATCAGCTATGAGACCATGATCGAGGA < 41bp 1 0.377913091730865 1 0.105038464069366 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021578 chr7:130021569 synonymous SNV . 0 12 hm5C_associated_SNPs_24575 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 34bp
chr7 130021569 130021569 1 + C T KIRC 130021586 + 130021566 130021606 41 CCACGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGT CCATGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGT < 41bp 1 0.151257887642458 1 0.0426640212535858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021586 chr7:130021569 synonymous SNV . 0 4 hm5C_associated_SNPs_24576 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 99bp
chr7 130021569 130021569 1 + C T KIRC 130021586 + 130021566 130021606 41 CCACGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGT CCATGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGT < 41bp 1 0.151257887642458 1 0.0426640212535858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021586 chr7:130021569 synonymous SNV . 0 4 hm5C_associated_SNPs_24576 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 34bp
chr7 130021569 130021569 1 + C T KIRC 130021587 + 130021567 130021607 41 CACGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGTC CATGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGTC < 41bp 1 0.723153324669049 1 0.160775035619736 experiment 0.553693350661902 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021587 chr7:130021569 synonymous SNV . 0 3 hm5C_associated_SNPs_24577 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 99bp
chr7 130021569 130021569 1 + C T KIRC 130021587 + 130021567 130021607 41 CACGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGTC CATGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGTC < 41bp 1 0.723153324669049 1 0.160775035619736 experiment 0.553693350661902 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021587 chr7:130021569 synonymous SNV . 0 3 hm5C_associated_SNPs_24577 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 34bp
chr17 1634217 1634217 1 + A T KIRC 1634199 + 1634179 1634219 41 CGCCCGCCTGTATGGGGAGCCTGTCCTCACCTACCAGTACC CGCCCGCCTGTATGGGGAGCCTGTCCTCACCTACCAGTTCC < 41bp 1 0.113464039536647 1 0.0619980096817017 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1634199 chr17:1634217 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_24578 0 0 0 0 1 WDR81 chr17:1634239 5'GT 1634239 Upstream 23bp
chr11 65827424 65827424 1 + C T KIRC 65827410 + 65827390 65827430 41 CAAACGGGGCATTGAGAAGCCCCCCTTCGAGCTGCCAGACT CAAACGGGGCATTGAGAAGCCCCCCTTCGAGCTGTCAGACT < 41bp 1 0.172835741656097 1 0.0702197551727295 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827410 chr11:65827424 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_24586 0 0 1 0 1 SF3B2 chr11:65827480 5'GT 65827480 Upstream 57bp
chr7 142459694 142459694 1 + A G KIRC 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCGGCCAAG < 41bp 1 0.535082572416632 1 0.243554711341858 experiment 0.929834855166735 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459694 synonymous SNV . 0 35 hm5C_associated_SNPs_24587 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 70bp
chr7 142459694 142459694 1 + A G KIRC 142459685 + 142459665 142459705 41 CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT CTGGAGGGGAATGAGCAGTTCATCAATGCGGCCAAGATCAT < 41bp 1 0.64708539365638 1 0.0485488772392273 experiment 0.705829212687241 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459685 chr7:142459694 synonymous SNV . 0 30 hm5C_associated_SNPs_24588 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 70bp
chr7 142459694 142459694 1 + A G KIRC 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAGGGGAATGAGCAGTTCATCAATGCGGCCAAGATCATCCG < 41bp 1 0.646961756630177 1 0.40596204996109 experiment 0.706076486739645 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459694 synonymous SNV . 0 27 hm5C_associated_SNPs_24589 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 70bp
chr7 142459694 142459694 1 + A G KIRC 142459693 + 142459673 142459713 41 GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC GAATGAGCAGTTCATCAATGCGGCCAAGATCATCCGCCACC < 41bp 1 0.585058683933448 1 0.0549094974994659 experiment 0.829882632133104 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459693 chr7:142459694 synonymous SNV . 0 22 hm5C_associated_SNPs_24590 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 70bp
chr7 142459694 142459694 1 + A G KIRC 142459696 + 142459676 142459716 41 TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC TGAGCAGTTCATCAATGCGGCCAAGATCATCCGCCACCCCC < 41bp 1 0.324317647139224 1 0.192048579454422 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459696 chr7:142459694 synonymous SNV . 0 19 hm5C_associated_SNPs_24591 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 70bp
chr7 142459694 142459694 1 + A G KIRC 142459703 + 142459683 142459723 41 TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGA TTCATCAATGCGGCCAAGATCATCCGCCACCCCCAATACGA < 41bp 1 0.34237773126818 1 0.125001817941666 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459703 chr7:142459694 synonymous SNV . 0 12 hm5C_associated_SNPs_24592 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 70bp
chr7 142459694 142459694 1 + A G KIRC 142459706 + 142459686 142459726 41 ATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAG ATCAATGCGGCCAAGATCATCCGCCACCCCCAATACGACAG < 41bp 1 0.343192948513359 1 0.464854180812836 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459706 chr7:142459694 synonymous SNV . 0 9 hm5C_associated_SNPs_24593 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 70bp
chr7 142459694 142459694 1 + A G KIRC 142459707 + 142459687 142459727 41 TCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGG TCAATGCGGCCAAGATCATCCGCCACCCCCAATACGACAGG < 41bp 1 0.790891202784619 1 0.377231299877167 experiment 0.418217594430761 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459707 chr7:142459694 synonymous SNV . 0 8 hm5C_associated_SNPs_24594 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 70bp
chr7 142459694 142459694 1 + A G KIRC 142459709 + 142459689 142459729 41 AATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA AATGCGGCCAAGATCATCCGCCACCCCCAATACGACAGGAA < 41bp 1 0.107641799671718 1 0.0878535211086273 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459709 chr7:142459694 synonymous SNV . 0 6 hm5C_associated_SNPs_24595 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 70bp
chr7 142459694 142459694 1 + A G KIRC 142459710 + 142459690 142459730 41 ATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG ATGCGGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG < 41bp 1 0.200154097769332 1 0.116598963737488 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459710 chr7:142459694 synonymous SNV . 0 5 hm5C_associated_SNPs_24596 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 70bp
chr7 142459694 142459694 1 + A G KIRC 142459712 + 142459692 142459732 41 GCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC GCGGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC < 41bp 1 0.147421072556251 1 0.0882872343063354 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459712 chr7:142459694 synonymous SNV . 0 3 hm5C_associated_SNPs_24597 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 70bp
chr7 142459694 142459694 1 + A G KIRC 142459713 + 142459693 142459733 41 CAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT CGGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT < 41bp 1 0.504424130096556 1 0.502333104610443 experiment 0.991151739806888 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459713 chr7:142459694 synonymous SNV . 0 2 hm5C_associated_SNPs_24598 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 70bp
chr7 142459694 142459694 1 + A G KIRC 142459714 + 142459694 142459734 41 AGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC GGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC < 41bp 1 0.491807274958439 1 0.197892636060715 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459714 chr7:142459694 synonymous SNV . 0 1 hm5C_associated_SNPs_24599 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 70bp
chr17 38610249 38610249 1 + C T KIRC 38610248 + 38610228 38610268 41 GCCGCTTCACAGAGCCGCACCCACGAGGACCTCTACATCAT GCCGCTTCACAGAGCCGCACCTACGAGGACCTCTACATCAT < 41bp 1 0.581919501726288 1 0.162535011768341 experiment 0.836160996547424 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38610248 chr17:38610249 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_24600 0 0 1 0 2 IGFBP4 chr17:38610180 3'AG 38610180 Downstream 70bp
chr17 38610249 38610249 1 + C T KIRC 38610248 + 38610228 38610268 41 GCCGCTTCACAGAGCCGCACCCACGAGGACCTCTACATCAT GCCGCTTCACAGAGCCGCACCTACGAGGACCTCTACATCAT < 41bp 1 0.581919501726288 1 0.162535011768341 experiment 0.836160996547424 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38610248 chr17:38610249 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_24600 0 0 1 0 2 IGFBP4 chr17:38610314 5'GT 38610314 Upstream 66bp
chr8 48874107 48874107 1 + T A KIRC 48874104 + 48874084 48874124 41 GAGGATGCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA GAGGATGCCAGGTCATCTCCCTCACAGAGACGTAGAGGCGA < 41bp 1 0.260547590004434 1 0.0882163345813751 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874104 chr8:48874107 synonymous SNV . 0 24 hm5C_associated_SNPs_24601 0 0 1 0 1 MCM4 chr8:48874076 3'AG 48874076 Downstream 32bp
chr9 103002449 103002449 1 + C T KIRC 103002451 + 103002431 103002471 41 CGTGGTTGATGTCTTGACCTCATATGAAAGCTGCAATATAA CGTGGTTGATGTCTTGACTTCATATGAAAGCTGCAATATAA < 41bp 1 0.143983986158047 1 0.370405077934265 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control INVS ENSG00000119509 CDS Human protein_coding chr9:103002451 chr9:103002449 synonymous SNV . 0 19 hm5C_associated_SNPs_24602 0 0 1 0 1 INVS chr9:103002522 5'GT 103002522 Upstream 74bp
chr11 66291217 66291217 1 + A C KIRC 66291204 + 66291184 66291224 41 TTCCCTGCCAGGGGAAGAAGCTGTGGACAGTGCAGATGCCC TTCCCTGCCAGGGGAAGAAGCTGTGGACAGTGCCGATGCCC < 41bp 1 0.596940564158898 1 0.715129435062408 experiment 0.806118871682203 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66291204 chr11:66291217 nonsynonymous SNV 0.998 0 34 hm5C_associated_SNPs_24603 0 0 0 0 1 BBS1 chr11:66291195 3'AG 66291195 Downstream 23bp
chr6 52943655 52943655 1 + T C KIRC 52943668 + 52943648 52943688 41 AGATTACTTATACCCGGTCTCCAGATGGTGATGGCGTTGGA AGATTACCTATACCCGGTCTCCAGATGGTGATGGCGTTGGA < 41bp 1 0.577715266168115 1 0.756308615207672 experiment 0.84456946766377 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXO9 ENSG00000112146 CDS Human protein_coding chr6:52943668 chr6:52943655 synonymous SNV . 0 8 hm5C_associated_SNPs_24604 0 0 1 0 2 FBXO9 chr6:52943597 3'AG 52943597 Downstream 59bp
chr6 52943655 52943655 1 + T C KIRC 52943668 + 52943648 52943688 41 AGATTACTTATACCCGGTCTCCAGATGGTGATGGCGTTGGA AGATTACCTATACCCGGTCTCCAGATGGTGATGGCGTTGGA < 41bp 1 0.577715266168115 1 0.756308615207672 experiment 0.84456946766377 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXO9 ENSG00000112146 CDS Human protein_coding chr6:52943668 chr6:52943655 synonymous SNV . 0 8 hm5C_associated_SNPs_24604 0 0 1 0 2 FBXO9 chr6:52943696 5'GT 52943696 Upstream 42bp
chr5 52221264 52221264 1 + A T KIRC 52221259 + 52221239 52221279 41 CAAAAATACAAAGGACAGTGCCTATAACACCAGGACAATAG CAAAAATACAAAGGACAGTGCCTATTACACCAGGACAATAG < 41bp 1 0.01830936039196 1 0.0781328678131104 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ITGA1 ENSG00000213949 CDS Human protein_coding chr5:52221259 chr5:52221264 nonsynonymous SNV 0.994 4 26 hm5C_associated_SNPs_24605 0 0 0 0 1 ITGA1 chr5:52221317 5'GT 52221317 Upstream 54bp
chr10 104129688 104129688 1 + G T KIRC 104129695 + 104129675 104129715 41 GTCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCA GTCTAGTGTTCGGTGCCCATCCACTGAAAACCAAGAGGCCA < 41bp 1 0.179458913618639 1 0.546637654304504 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129695 chr10:104129688 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_24606 0 0 1 0 2 GBF1 chr10:104129618 3'AG 104129618 Downstream 71bp
chr10 104129688 104129688 1 + G T KIRC 104129695 + 104129675 104129715 41 GTCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCA GTCTAGTGTTCGGTGCCCATCCACTGAAAACCAAGAGGCCA < 41bp 1 0.179458913618639 1 0.546637654304504 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129695 chr10:104129688 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_24606 0 0 1 0 2 GBF1 chr10:104129741 5'GT 104129741 Upstream 54bp
chr10 104129688 104129688 1 + G T KIRC 104129696 + 104129676 104129716 41 TCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCAA TCTAGTGTTCGGTGCCCATCCACTGAAAACCAAGAGGCCAA < 41bp 1 0.489373625811941 1 0.67913681268692 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129696 chr10:104129688 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_24607 0 0 1 0 2 GBF1 chr10:104129618 3'AG 104129618 Downstream 71bp
chr10 104129688 104129688 1 + G T KIRC 104129696 + 104129676 104129716 41 TCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCAA TCTAGTGTTCGGTGCCCATCCACTGAAAACCAAGAGGCCAA < 41bp 1 0.489373625811941 1 0.67913681268692 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129696 chr10:104129688 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_24607 0 0 1 0 2 GBF1 chr10:104129741 5'GT 104129741 Upstream 54bp
chr6 144876009 144876009 1 + A T KIRC 144875991 + 144875971 144876011 41 TCTATATTCTTCAGCAAGCCCGACGGGATCCACTCACCAAA TCTATATTCTTCAGCAAGCCCGACGGGATCCACTCACCTAA < 41bp 1 0.235226559528031 1 0.371474087238312 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144875991 chr6:144876009 stopgain 0.989 0 39 hm5C_associated_SNPs_24610 0 0 1 0 1 UTRN chr6:144876029 5'GT 144876029 Upstream 21bp
chr21 45534126 45534126 1 + C T KIRC 45534115 + 45534095 45534135 41 TCTGTGCTGCACCACTTCCACTTCAAGGGCTCTGTGCACAG TCTGTGCTGCACCACTTCCACTTCAAGGGCTTTGTGCACAG < 41bp 1 0.779632826802676 1 0.730739057064056 experiment 0.440734346394649 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45534115 chr21:45534126 nonsynonymous SNV 0.998 2 32 hm5C_associated_SNPs_24611 0 0 1 0 2 PWP2 chr21:45534060 3'AG 45534060 Downstream 67bp
chr21 45534126 45534126 1 + C T KIRC 45534115 + 45534095 45534135 41 TCTGTGCTGCACCACTTCCACTTCAAGGGCTCTGTGCACAG TCTGTGCTGCACCACTTCCACTTCAAGGGCTTTGTGCACAG < 41bp 1 0.779632826802676 1 0.730739057064056 experiment 0.440734346394649 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45534115 chr21:45534126 nonsynonymous SNV 0.998 2 32 hm5C_associated_SNPs_24611 0 0 1 0 2 PWP2 chr21:45534159 5'GT 45534159 Upstream 34bp
chr7 142458551 142458551 1 + C T KIRC 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGT < 41bp 1 0.436691967822426 1 0.2731853723526 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458551 synonymous SNV . 0 41 hm5C_associated_SNPs_24612 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 72bp
chr7 142458551 142458551 1 + C T KIRC 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGT < 41bp 1 0.436691967822426 1 0.2731853723526 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458551 synonymous SNV . 0 41 hm5C_associated_SNPs_24612 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 15bp
chr7 142458551 142458551 1 + C T KIRC 142458547 + 142458527 142458567 41 CGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT CGAACAGTGGGTGGTATCAGCAGGTCACTGCTACAAGTCGT < 41bp 1 0.661265445965955 1 0.821524560451508 experiment 0.67746910806809 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458547 chr7:142458551 synonymous SNV . 0 25 hm5C_associated_SNPs_24613 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 72bp
chr7 142458551 142458551 1 + C T KIRC 142458547 + 142458527 142458567 41 CGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT CGAACAGTGGGTGGTATCAGCAGGTCACTGCTACAAGTCGT < 41bp 1 0.661265445965955 1 0.821524560451508 experiment 0.67746910806809 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458547 chr7:142458551 synonymous SNV . 0 25 hm5C_associated_SNPs_24613 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 15bp
chr7 142458551 142458551 1 + C T KIRC 142458552 + 142458532 142458572 41 AGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTG AGTGGGTGGTATCAGCAGGTCACTGCTACAAGTCGTAAGTG < 41bp 1 0.52180330480069 1 0.215376108884811 experiment 0.956393390398619 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458552 chr7:142458551 synonymous SNV . 0 20 hm5C_associated_SNPs_24614 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 72bp
chr7 142458551 142458551 1 + C T KIRC 142458552 + 142458532 142458572 41 AGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTG AGTGGGTGGTATCAGCAGGTCACTGCTACAAGTCGTAAGTG < 41bp 1 0.52180330480069 1 0.215376108884811 experiment 0.956393390398619 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458552 chr7:142458551 synonymous SNV . 0 20 hm5C_associated_SNPs_24614 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 15bp
chr7 142458551 142458551 1 + C T KIRC 142458554 + 142458534 142458574 41 TGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTG TGGGTGGTATCAGCAGGTCACTGCTACAAGTCGTAAGTGTG < 41bp 1 0.36569687994881 1 0.0693067312240601 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458554 chr7:142458551 synonymous SNV . 0 18 hm5C_associated_SNPs_24615 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 72bp
chr7 142458551 142458551 1 + C T KIRC 142458554 + 142458534 142458574 41 TGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTG TGGGTGGTATCAGCAGGTCACTGCTACAAGTCGTAAGTGTG < 41bp 1 0.36569687994881 1 0.0693067312240601 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458554 chr7:142458551 synonymous SNV . 0 18 hm5C_associated_SNPs_24615 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 15bp
chr7 142458551 142458551 1 + C T KIRC 142458557 + 142458537 142458577 41 GTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTGGGG GTGGTATCAGCAGGTCACTGCTACAAGTCGTAAGTGTGGGG < 41bp 1 0.520902720143555 1 0.662981629371643 experiment 0.95819455971289 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458557 chr7:142458551 synonymous SNV . 0 15 hm5C_associated_SNPs_24616 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 72bp
chr7 142458551 142458551 1 + C T KIRC 142458557 + 142458537 142458577 41 GTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTGGGG GTGGTATCAGCAGGTCACTGCTACAAGTCGTAAGTGTGGGG < 41bp 1 0.520902720143555 1 0.662981629371643 experiment 0.95819455971289 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458557 chr7:142458551 synonymous SNV . 0 15 hm5C_associated_SNPs_24616 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 15bp
chr7 142458551 142458551 1 + C T KIRC 142458560 + 142458540 142458580 41 GTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTGGGGCCC GTATCAGCAGGTCACTGCTACAAGTCGTAAGTGTGGGGCCC < 41bp 1 0.51044757570149 1 0.788706123828888 experiment 0.97910484859702 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458560 chr7:142458551 synonymous SNV . 0 12 hm5C_associated_SNPs_24617 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 72bp
chr7 142458551 142458551 1 + C T KIRC 142458560 + 142458540 142458580 41 GTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTGGGGCCC GTATCAGCAGGTCACTGCTACAAGTCGTAAGTGTGGGGCCC < 41bp 1 0.51044757570149 1 0.788706123828888 experiment 0.97910484859702 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458560 chr7:142458551 synonymous SNV . 0 12 hm5C_associated_SNPs_24617 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 15bp
chr7 142458551 142458551 1 + C T KIRC 142458565 + 142458545 142458585 41 AGCAGGCCACTGCTACAAGTCGTAAGTGTGGGGCCCCCGAC AGCAGGTCACTGCTACAAGTCGTAAGTGTGGGGCCCCCGAC < 41bp 1 0.727112160931628 1 0.134525716304779 experiment 0.545775678136745 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458565 chr7:142458551 synonymous SNV . 0 7 hm5C_associated_SNPs_24618 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 72bp
chr7 142458551 142458551 1 + C T KIRC 142458565 + 142458545 142458585 41 AGCAGGCCACTGCTACAAGTCGTAAGTGTGGGGCCCCCGAC AGCAGGTCACTGCTACAAGTCGTAAGTGTGGGGCCCCCGAC < 41bp 1 0.727112160931628 1 0.134525716304779 experiment 0.545775678136745 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458565 chr7:142458551 synonymous SNV . 0 7 hm5C_associated_SNPs_24618 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 15bp
chr7 142459667 142459667 1 + G A KIRC 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTGAGACTGGGAGAGCACAACATCGAAGTCCTAGAGGGGAA < 41bp 1 0.684885670504633 1 0.146683484315872 experiment 0.630228658990735 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459667 synonymous SNV . 0 33 hm5C_associated_SNPs_24619 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 43bp
chr7 142459667 142459667 1 + G A KIRC 142459658 + 142459638 142459678 41 AGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAATGA AGACTGGGAGAGCACAACATCGAAGTCCTAGAGGGGAATGA < 41bp 1 0.746623074088106 1 0.444581925868988 experiment 0.506753851823787 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459658 chr7:142459667 synonymous SNV . 0 30 hm5C_associated_SNPs_24620 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 43bp
chr7 142459667 142459667 1 + G A KIRC 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCACAACATCGAAGTCCTAGAGGGGAATGAGCAGTT < 41bp 1 0.320789391124179 1 0.222928076982498 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459667 synonymous SNV . 0 24 hm5C_associated_SNPs_24621 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 43bp
chr7 142459667 142459667 1 + G A KIRC 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG AAGTCCTAGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG < 41bp 1 0.499683114656593 1 0.297142505645752 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459667 synonymous SNV . 0 8 hm5C_associated_SNPs_24622 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 43bp
chr7 142459667 142459667 1 + G A KIRC 142459685 + 142459665 142459705 41 CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT CTAGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT < 41bp 1 0.64469839690225 1 0.0451129674911499 experiment 0.710603206195501 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459685 chr7:142459667 synonymous SNV . 0 3 hm5C_associated_SNPs_24623 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 43bp
chr14 73550237 73550237 1 + A G KIRC 73550235 + 73550215 73550255 41 TTTTGAGCTGGAAGAGAGTACAAGGTGCTTCCGGAAAGCTT TTTTGAGCTGGAAGAGAGTACAGGGTGCTTCCGGAAAGCTT < 41bp 1 0.682192563830159 1 0.762013792991638 experiment 0.635614872339681 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73550235 chr14:73550237 synonymous SNV . 0 23 hm5C_associated_SNPs_24624 0 0 1 0 2 RBM25 chr14:73550202 3'AG 73550202 Downstream 36bp
chr14 73550237 73550237 1 + A G KIRC 73550235 + 73550215 73550255 41 TTTTGAGCTGGAAGAGAGTACAAGGTGCTTCCGGAAAGCTT TTTTGAGCTGGAAGAGAGTACAGGGTGCTTCCGGAAAGCTT < 41bp 1 0.682192563830159 1 0.762013792991638 experiment 0.635614872339681 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73550235 chr14:73550237 synonymous SNV . 0 23 hm5C_associated_SNPs_24624 0 0 1 0 2 RBM25 chr14:73550259 5'GT 73550259 Upstream 23bp
chr20 60701436 60701436 1 + A G KIRC 60701448 + 60701428 60701468 41 GGCGCCCTACGGCCCGCTGGCGGCCAGCTCCCTGCTCAGCC GGCGCCCTGCGGCCCGCTGGCGGCCAGCTCCCTGCTCAGCC < 41bp 1 0.749932800151705 1 0.705635666847229 experiment 0.50013439969659 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSM14B ENSG00000149657 CDS Human protein_coding chr20:60701448 chr20:60701436 nonsynonymous SNV 0.880 4 9 hm5C_associated_SNPs_24625 0 0 1 0 2 LSM14B chr20:60701360 3'AG 60701360 Downstream 77bp
chr20 60701436 60701436 1 + A G KIRC 60701448 + 60701428 60701468 41 GGCGCCCTACGGCCCGCTGGCGGCCAGCTCCCTGCTCAGCC GGCGCCCTGCGGCCCGCTGGCGGCCAGCTCCCTGCTCAGCC < 41bp 1 0.749932800151705 1 0.705635666847229 experiment 0.50013439969659 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSM14B ENSG00000149657 CDS Human protein_coding chr20:60701448 chr20:60701436 nonsynonymous SNV 0.880 4 9 hm5C_associated_SNPs_24625 0 0 1 0 2 LSM14B chr20:60701495 5'GT 60701495 Upstream 60bp
chr13 99098974 99098974 1 + T C KIRC 99098975 + 99098955 99098995 41 CTACTCGCTCACCATCCCCTCTGAGTCCGAGAACATCCAGA CTACTCGCTCACCATCCCCCCTGAGTCCGAGAACATCCAGA < 41bp 1 0.180412235709921 1 0.0391455888748169 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99098975 chr13:99098974 nonsynonymous SNV 0.958 1 20 hm5C_associated_SNPs_24627 0 0 1 0 2 FARP1 chr13:99098920 3'AG 99098920 Downstream 55bp
chr13 99098974 99098974 1 + T C KIRC 99098975 + 99098955 99098995 41 CTACTCGCTCACCATCCCCTCTGAGTCCGAGAACATCCAGA CTACTCGCTCACCATCCCCCCTGAGTCCGAGAACATCCAGA < 41bp 1 0.180412235709921 1 0.0391455888748169 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99098975 chr13:99098974 nonsynonymous SNV 0.958 1 20 hm5C_associated_SNPs_24627 0 0 1 0 2 FARP1 chr13:99099071 5'GT 99099071 Upstream 98bp
chr13 99098974 99098974 1 + T C KIRC 99098981 + 99098961 99099001 41 GCTCACCATCCCCTCTGAGTCCGAGAACATCCAGAAAGACT GCTCACCATCCCCCCTGAGTCCGAGAACATCCAGAAAGACT < 41bp 1 0.156948396964846 1 0.459299325942993 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99098981 chr13:99098974 nonsynonymous SNV 0.958 1 14 hm5C_associated_SNPs_24628 0 0 1 0 2 FARP1 chr13:99098920 3'AG 99098920 Downstream 55bp
chr13 99098974 99098974 1 + T C KIRC 99098981 + 99098961 99099001 41 GCTCACCATCCCCTCTGAGTCCGAGAACATCCAGAAAGACT GCTCACCATCCCCCCTGAGTCCGAGAACATCCAGAAAGACT < 41bp 1 0.156948396964846 1 0.459299325942993 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99098981 chr13:99098974 nonsynonymous SNV 0.958 1 14 hm5C_associated_SNPs_24628 0 0 1 0 2 FARP1 chr13:99099071 5'GT 99099071 Upstream 98bp
chr16 68071947 68071947 1 + T A KIRC 68071957 + 68071937 68071977 41 ATAGCCTCTCTCTGTGTTACCATAATAAGCTAATCCTGGCC ATAGCCTCTCACTGTGTTACCATAATAAGCTAATCCTGGCC < 41bp 1 0.33732784111106 1 0.174164295196533 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68071957 chr16:68071947 synonymous SNV . 0 11 hm5C_associated_SNPs_24629 0 0 0 0 1 DUS2 chr16:68071909 3'AG 68071909 Downstream 39bp
chr19 35501012 35501012 1 + G T KIRC 35501031 + 35501011 35501051 41 TGCAGCGTGAGATCCTGCTCCAGGGCCGCCTCTACCTCTCT TTCAGCGTGAGATCCTGCTCCAGGGCCGCCTCTACCTCTCT < 41bp 1 0.690521015420358 1 0.725491523742676 experiment 0.618957969159284 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35501031 chr19:35501012 synonymous SNV . 0 2 hm5C_associated_SNPs_24630 0 0 1 0 2 GRAMD1A chr19:35500996 3'AG 35500996 Downstream 17bp
chr19 35501012 35501012 1 + G T KIRC 35501031 + 35501011 35501051 41 TGCAGCGTGAGATCCTGCTCCAGGGCCGCCTCTACCTCTCT TTCAGCGTGAGATCCTGCTCCAGGGCCGCCTCTACCTCTCT < 41bp 1 0.690521015420358 1 0.725491523742676 experiment 0.618957969159284 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35501031 chr19:35501012 synonymous SNV . 0 2 hm5C_associated_SNPs_24630 0 0 1 0 2 GRAMD1A chr19:35501099 5'GT 35501099 Upstream 88bp
chr19 50753042 50753042 1 + C G KIRC 50753062 + 50753042 50753082 41 CTCGACCTGCAGCCCTGCATCGACCTCATCGAGCGGCCGGT GTCGACCTGCAGCCCTGCATCGACCTCATCGAGCGGCCGGT < 41bp 1 0.252283043625159 1 0.541457712650299 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50753062 chr19:50753042 nonsynonymous SNV 0.099 3 1 hm5C_associated_SNPs_24631 0 0 0 0 1 MYH14 chr19:50753080 5'GT 50753080 Upstream 39bp
chr1 180849261 180849261 1 + T C KIRC 180849252 + 180849232 180849272 41 TCCGCCTGGAGAATGAACATCTGAATAACTGTGGTGAATTC TCCGCCTGGAGAATGAACATCTGAATAACCGTGGTGAATTC < 41bp 1 0.69682199537784 1 0.446247935295105 experiment 0.606356009244321 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control XPR1 ENSG00000143324 CDS Human protein_coding chr1:180849252 chr1:180849261 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_24632 0 0 1 0 1 XPR1 chr1:180849212 3'AG 180849212 Downstream 50bp
chr5 54456043 54456043 1 + C T KIRC 54456062 + 54456042 54456082 41 CCGCTAAAATGTTCCGGGCCCAGAGCAAAGGTATTTGCAGT CTGCTAAAATGTTCCGGGCCCAGAGCAAAGGTATTTGCAGT < 41bp 1 0.482128155912895 1 0.488584518432617 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPX8 ENSG00000164294 CDS Human protein_coding chr5:54456062 chr5:54456043 nonsynonymous SNV 0.987 4 2 hm5C_associated_SNPs_24633 0 0 1 0 1 GPX8 chr5:54456071 5'GT 54456071 Upstream 29bp
chr11 71502830 71502830 1 + T A KIRC 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGAAT < 41bp 1 0.172693274982518 1 0.454272359609604 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502830 nonsynonymous SNV 0.849 2 39 hm5C_associated_SNPs_24634 0 0 0 0 3 FAM86C1 chr11:71502782 3'AG 71502782 Downstream 49bp
chr11 71502830 71502830 1 + T A KIRC 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGAAT < 41bp 1 0.172693274982518 1 0.454272359609604 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502830 nonsynonymous SNV 0.849 2 39 hm5C_associated_SNPs_24634 0 0 0 0 3 FAM86C1 chr11:71502785 3'AG 71502785 Downstream 46bp
chr11 71502830 71502830 1 + T A KIRC 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGAAT < 41bp 1 0.172693274982518 1 0.454272359609604 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502830 nonsynonymous SNV 0.849 2 39 hm5C_associated_SNPs_24634 0 0 0 0 3 FAM86C1 chr11:71502865 5'GT 71502865 Upstream 36bp
chr6 29911945 29911945 1 + G A KIRC 29911960 + 29911940 29911980 41 CATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCC CATGAAGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCC < 41bp 1 0.687584285586072 1 0.296805739402771 experiment 0.624831428827856 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911960 chr6:29911945 synonymous SNV . 0 6 hm5C_associated_SNPs_24635 0 0 0 0 1 HLA-A chr6:29911899 3'AG 29911899 Downstream 47bp
chr22 29695794 29695794 1 + G A KIRC 29695781 + 29695761 29695801 41 CCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG CCCTGGGGGGCCCCCTGGACCTTTGATGGAACAAATGGGAG < 41bp 1 0.392844523390184 1 0.189939498901367 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695781 chr22:29695794 synonymous SNV . 0 34 hm5C_associated_SNPs_24636 0 0 1 0 1 EWSR1 chr22:29695841 5'GT 29695841 Upstream 48bp
chr1 171759689 171759689 1 + G T KIRC 171759671 + 171759651 171759691 41 CCTGCAGCCCCGGGGCAGTCCATTGATAAGAGTTACCTGTG CCTGCAGCCCCGGGGCAGTCCATTGATAAGAGTTACCTTTG < 41bp 1 0.327125099567261 1 0.0300736427307129 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171759671 chr1:171759689 synonymous SNV . 0 39 hm5C_associated_SNPs_24637 0 0 1 0 2 METTL13 chr1:171759592 3'AG 171759592 Downstream 98bp
chr1 171759689 171759689 1 + G T KIRC 171759671 + 171759651 171759691 41 CCTGCAGCCCCGGGGCAGTCCATTGATAAGAGTTACCTGTG CCTGCAGCCCCGGGGCAGTCCATTGATAAGAGTTACCTTTG < 41bp 1 0.327125099567261 1 0.0300736427307129 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171759671 chr1:171759689 synonymous SNV . 0 39 hm5C_associated_SNPs_24637 0 0 1 0 2 METTL13 chr1:171759756 5'GT 171759756 Upstream 68bp
chr7 142458509 142458509 1 + T C KIRC 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTGGCTACCACTTCTGCGGTGGCTC < 41bp 1 0.0695710083278127 1 0.0164762735366821 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458509 synonymous SNV . 0 33 hm5C_associated_SNPs_24638 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 30bp
chr7 142458509 142458509 1 + T C KIRC 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTGGCTACCACTTCTGCGGTGGCTC < 41bp 1 0.0695710083278127 1 0.0164762735366821 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458509 synonymous SNV . 0 33 hm5C_associated_SNPs_24638 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 57bp
chr7 142458509 142458509 1 + T C KIRC 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTGGCTACCACTTCTGCGGTGGCTCCCT < 41bp 1 0.0825753594150823 1 0.166979759931564 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458509 synonymous SNV . 0 30 hm5C_associated_SNPs_24639 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 30bp
chr7 142458509 142458509 1 + T C KIRC 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTGGCTACCACTTCTGCGGTGGCTCCCT < 41bp 1 0.0825753594150823 1 0.166979759931564 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458509 synonymous SNV . 0 30 hm5C_associated_SNPs_24639 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 57bp
chr7 142458509 142458509 1 + T C KIRC 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGGCTACCACTTCTGCGGTGGCTCCCTC < 41bp 1 0.213082541163866 1 0.414930254220963 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458509 synonymous SNV . 0 29 hm5C_associated_SNPs_24640 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 30bp
chr7 142458509 142458509 1 + T C KIRC 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGGCTACCACTTCTGCGGTGGCTCCCTC < 41bp 1 0.213082541163866 1 0.414930254220963 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458509 synonymous SNV . 0 29 hm5C_associated_SNPs_24640 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 57bp
chr7 142458509 142458509 1 + T C KIRC 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGCTACCACTTCTGCGGTGGCTCCCTCAT < 41bp 1 0.263182832731453 1 0.547744035720825 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458509 synonymous SNV . 0 27 hm5C_associated_SNPs_24641 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 30bp
chr7 142458509 142458509 1 + T C KIRC 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGCTACCACTTCTGCGGTGGCTCCCTCAT < 41bp 1 0.263182832731453 1 0.547744035720825 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458509 synonymous SNV . 0 27 hm5C_associated_SNPs_24641 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 57bp
chr7 142458509 142458509 1 + T C KIRC 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGCGGTGGCTCCCTCATCAACGAACAGTG < 41bp 1 0.280673915626934 1 0.114153772592545 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458509 synonymous SNV . 0 15 hm5C_associated_SNPs_24642 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 30bp
chr7 142458509 142458509 1 + T C KIRC 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGCGGTGGCTCCCTCATCAACGAACAGTG < 41bp 1 0.280673915626934 1 0.114153772592545 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458509 synonymous SNV . 0 15 hm5C_associated_SNPs_24642 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 57bp
chr7 142458509 142458509 1 + T C KIRC 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGCGGTGGCTCCCTCATCAACGAACAGTGGG < 41bp 1 0.0877145165511597 1 0.0637551248073578 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458509 synonymous SNV . 0 13 hm5C_associated_SNPs_24643 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 30bp
chr7 142458509 142458509 1 + T C KIRC 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGCGGTGGCTCCCTCATCAACGAACAGTGGG < 41bp 1 0.0877145165511597 1 0.0637551248073578 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458509 synonymous SNV . 0 13 hm5C_associated_SNPs_24643 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 57bp
chr7 142458509 142458509 1 + T C KIRC 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGCGGTGGCTCCCTCATCAACGAACAGTGGGT < 41bp 1 0.171183897969413 1 0.0575220882892609 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458509 synonymous SNV . 0 12 hm5C_associated_SNPs_24644 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 30bp
chr7 142458509 142458509 1 + T C KIRC 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGCGGTGGCTCCCTCATCAACGAACAGTGGGT < 41bp 1 0.171183897969413 1 0.0575220882892609 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458509 synonymous SNV . 0 12 hm5C_associated_SNPs_24644 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 57bp
chr7 142458509 142458509 1 + T C KIRC 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGCGGTGGCTCCCTCATCAACGAACAGTGGGTG < 41bp 1 0.386208774786684 1 0.25637075304985 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458509 synonymous SNV . 0 11 hm5C_associated_SNPs_24645 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 30bp
chr7 142458509 142458509 1 + T C KIRC 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGCGGTGGCTCCCTCATCAACGAACAGTGGGTG < 41bp 1 0.386208774786684 1 0.25637075304985 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458509 synonymous SNV . 0 11 hm5C_associated_SNPs_24645 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 57bp
chr7 142458509 142458509 1 + T C KIRC 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGCGGTGGCTCCCTCATCAACGAACAGTGGGTGGT < 41bp 1 0.475478513815991 1 0.693053364753723 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458509 synonymous SNV . 0 9 hm5C_associated_SNPs_24646 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 30bp
chr7 142458509 142458509 1 + T C KIRC 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGCGGTGGCTCCCTCATCAACGAACAGTGGGTGGT < 41bp 1 0.475478513815991 1 0.693053364753723 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458509 synonymous SNV . 0 9 hm5C_associated_SNPs_24646 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 57bp
chr7 142458509 142458509 1 + T C KIRC 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGCGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC < 41bp 1 0.694214089390978 1 0.578979074954987 experiment 0.611571821218043 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458509 synonymous SNV . 0 6 hm5C_associated_SNPs_24647 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 30bp
chr7 142458509 142458509 1 + T C KIRC 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGCGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC < 41bp 1 0.694214089390978 1 0.578979074954987 experiment 0.611571821218043 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458509 synonymous SNV . 0 6 hm5C_associated_SNPs_24647 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 57bp
chr7 142458509 142458509 1 + T C KIRC 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGCGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC < 41bp 1 0.367306811365878 1 0.357348620891571 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458509 synonymous SNV . 0 3 hm5C_associated_SNPs_24648 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 30bp
chr7 142458509 142458509 1 + T C KIRC 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGCGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC < 41bp 1 0.367306811365878 1 0.357348620891571 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458509 synonymous SNV . 0 3 hm5C_associated_SNPs_24648 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 57bp
chr5 176084597 176084597 1 + G A KIRC 176084617 + 176084597 176084637 41 GCAGAACTCTCTGACTGGGGCCCCTGGCCCGGCCCCACCCA ACAGAACTCTCTGACTGGGGCCCCTGGCCCGGCCCCACCCA < 41bp 1 0.388173362129912 1 0.0933266282081604 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176084617 chr5:176084597 synonymous SNV . 0 1 hm5C_associated_SNPs_24649 0 0 1 0 1 TSPAN17 chr5:176084519 3'AG 176084519 Downstream 79bp
chr20 44050027 44050027 1 + C T KIRC 44050042 + 44050022 44050062 41 GAGGCCCCCCCAGTGCCCTTCCTGCATGCCCAGCGGTACGT GAGGCTCCCCCAGTGCCCTTCCTGCATGCCCAGCGGTACGT < 41bp 1 0.1267752047336 1 0.0927641093730927 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44050042 chr20:44050027 synonymous SNV . 0 6 hm5C_associated_SNPs_24650 0 0 1 0 1 PIGT chr20:44050023 3'AG 44050023 Downstream 5bp
chr2 27663740 27663740 1 + C T KIRC 27663756 + 27663736 27663776 41 GTGACATCACCTGTCGTGCCCCCCTCTGTCAAGACTCCGAC GTGATATCACCTGTCGTGCCCCCCTCTGTCAAGACTCCGAC < 41bp 1 0.2351258689689 1 0.0165746212005615 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663756 chr2:27663740 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_24651 0 0 1 0 2 NRBP1 chr2:27663672 3'AG 27663672 Downstream 69bp
chr2 27663740 27663740 1 + C T KIRC 27663756 + 27663736 27663776 41 GTGACATCACCTGTCGTGCCCCCCTCTGTCAAGACTCCGAC GTGATATCACCTGTCGTGCCCCCCTCTGTCAAGACTCCGAC < 41bp 1 0.2351258689689 1 0.0165746212005615 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663756 chr2:27663740 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_24651 0 0 1 0 2 NRBP1 chr2:27663807 5'GT 27663807 Upstream 68bp
chr1 183891413 183891413 1 + C T KIRC 183891401 + 183891381 183891421 41 CTGTGATCCAGAGAGCCATGCTGAAGCACAATCTGGACTCA CTGTGATCCAGAGAGCCATGCTGAAGCACAATTTGGACTCA < 41bp 1 0.694836706076283 1 0.560725390911102 experiment 0.610326587847434 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RGL1 ENSG00000143344 CDS Human protein_coding chr1:183891401 chr1:183891413 synonymous SNV . 0 33 hm5C_associated_SNPs_24652 0 0 0 0 2 RGL1 chr1:183891356 3'AG 183891356 Downstream 58bp
chr1 183891413 183891413 1 + C T KIRC 183891401 + 183891381 183891421 41 CTGTGATCCAGAGAGCCATGCTGAAGCACAATCTGGACTCA CTGTGATCCAGAGAGCCATGCTGAAGCACAATTTGGACTCA < 41bp 1 0.694836706076283 1 0.560725390911102 experiment 0.610326587847434 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RGL1 ENSG00000143344 CDS Human protein_coding chr1:183891401 chr1:183891413 synonymous SNV . 0 33 hm5C_associated_SNPs_24652 0 0 0 0 2 RGL1 chr1:183891470 5'GT 183891470 Upstream 58bp
chr12 82796821 82796821 1 + A G KIRC 82796830 + 82796810 82796850 41 ACTTTGCGAATATTTACCTCCAACTCTGAAATCAAGGGAGT ACTTTGCGAATGTTTACCTCCAACTCTGAAATCAAGGGAGT < 41bp 1 0.303464963679887 1 0.157296746969223 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL25 ENSG00000127720 CDS Human protein_coding chr12:82796830 chr12:82796821 nonsynonymous SNV 0.979 0 12 hm5C_associated_SNPs_24653 0 0 0 0 2 METTL25 chr12:82796762 3'AG 82796762 Downstream 60bp
chr12 82796821 82796821 1 + A G KIRC 82796830 + 82796810 82796850 41 ACTTTGCGAATATTTACCTCCAACTCTGAAATCAAGGGAGT ACTTTGCGAATGTTTACCTCCAACTCTGAAATCAAGGGAGT < 41bp 1 0.303464963679887 1 0.157296746969223 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL25 ENSG00000127720 CDS Human protein_coding chr12:82796830 chr12:82796821 nonsynonymous SNV 0.979 0 12 hm5C_associated_SNPs_24653 0 0 0 0 2 METTL25 chr12:82796909 5'GT 82796909 Upstream 89bp
chr11 12243299 12243299 1 + G A KIRC 12243280 + 12243260 12243300 41 AAGAGCTGGAACCAGGGCACCCCTCCCCTGGAGCTGCTGGC AAGAGCTGGAACCAGGGCACCCCTCCCCTGGAGCTGCTGAC < 41bp 1 0.0377378424401761 1 0.123589396476746 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12243280 chr11:12243299 nonsynonymous SNV 0.962 4 40 hm5C_associated_SNPs_24654 0 0 1 0 1 MICAL2 chr11:12243306 5'GT 12243306 Upstream 8bp
chr1 145581235 145581235 1 + C T KIRC 145581253 + 145581233 145581273 41 TCCGGGTGTCACTCATGTGCCCGGTGGGTAAAAGGGGAGAA TCTGGGTGTCACTCATGTGCCCGGTGGGTAAAAGGGGAGAA < 41bp 1 0.174388170751061 1 0.273174673318863 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PIAS3 ENSG00000131788 CDS Human protein_coding chr1:145581253 chr1:145581235 nonsynonymous SNV . 0 3 hm5C_associated_SNPs_24655 0 0 0 0 2 PIAS3 chr1:145581182 3'AG 145581182 Downstream 54bp
chr1 145581235 145581235 1 + C T KIRC 145581253 + 145581233 145581273 41 TCCGGGTGTCACTCATGTGCCCGGTGGGTAAAAGGGGAGAA TCTGGGTGTCACTCATGTGCCCGGTGGGTAAAAGGGGAGAA < 41bp 1 0.174388170751061 1 0.273174673318863 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PIAS3 ENSG00000131788 CDS Human protein_coding chr1:145581253 chr1:145581235 nonsynonymous SNV . 0 3 hm5C_associated_SNPs_24655 0 0 0 0 2 PIAS3 chr1:145581255 5'GT 145581255 Upstream 21bp
chr17 18793149 18793149 1 + G T KIRC 18793154 + 18793134 18793174 41 GATCCCAGATTACAGGAATGCAGTAATCGTGGCCAAGTCTC GATCCCAGATTACAGTAATGCAGTAATCGTGGCCAAGTCTC < 41bp 1 0.70947060672414 1 0.18475079536438 experiment 0.58105878655172 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPSAP2 ENSG00000141127 CDS Human protein_coding chr17:18793154 chr17:18793149 stopgain 1.000 1 16 hm5C_associated_SNPs_24656 0 0 1 0 2 PRPSAP2 chr17:18793135 3'AG 18793135 Downstream 15bp
chr17 18793149 18793149 1 + G T KIRC 18793154 + 18793134 18793174 41 GATCCCAGATTACAGGAATGCAGTAATCGTGGCCAAGTCTC GATCCCAGATTACAGTAATGCAGTAATCGTGGCCAAGTCTC < 41bp 1 0.70947060672414 1 0.18475079536438 experiment 0.58105878655172 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPSAP2 ENSG00000141127 CDS Human protein_coding chr17:18793154 chr17:18793149 stopgain 1.000 1 16 hm5C_associated_SNPs_24656 0 0 1 0 2 PRPSAP2 chr17:18793190 5'GT 18793190 Upstream 42bp
chr8 22037969 22037969 1 + G A KIRC 22037952 + 22037932 22037972 41 ACCCCAATGGCTACTCTGCTCACATGCACTGCGTGTGGCGC ACCCCAATGGCTACTCTGCTCACATGCACTGCGTGTGACGC < 41bp 1 0.385044750930085 1 0.124210387468338 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037952 chr8:22037969 stopgain 0.991 0 38 hm5C_associated_SNPs_24658 0 0 1 1 2 BMP1 chr8:22037881 3'AG 22037881 Downstream 89bp
chr8 22037969 22037969 1 + G A KIRC 22037952 + 22037932 22037972 41 ACCCCAATGGCTACTCTGCTCACATGCACTGCGTGTGGCGC ACCCCAATGGCTACTCTGCTCACATGCACTGCGTGTGACGC < 41bp 1 0.385044750930085 1 0.124210387468338 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037952 chr8:22037969 stopgain 0.991 0 38 hm5C_associated_SNPs_24658 0 0 1 1 2 BMP1 chr8:22037996 5'GT 22037996 Upstream 28bp
chr10 118318744 118318744 1 + G T KIRC 118318729 + 118318709 118318749 41 GTCACTATGCTGATAGATATCCTGGGAAAACAAATGATGTG GTCACTATGCTGATAGATATCCTGGGAAAACAAATTATGTG < 41bp 1 0.54642238279834 1 0.507858097553253 experiment 0.90715523440332 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318729 chr10:118318744 nonsynonymous SNV 0.000 2 36 hm5C_associated_SNPs_24659 0 0 0 0 2 PNLIP chr10:118318666 3'AG 118318666 Downstream 79bp
chr10 118318744 118318744 1 + G T KIRC 118318729 + 118318709 118318749 41 GTCACTATGCTGATAGATATCCTGGGAAAACAAATGATGTG GTCACTATGCTGATAGATATCCTGGGAAAACAAATTATGTG < 41bp 1 0.54642238279834 1 0.507858097553253 experiment 0.90715523440332 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318729 chr10:118318744 nonsynonymous SNV 0.000 2 36 hm5C_associated_SNPs_24659 0 0 0 0 2 PNLIP chr10:118318795 5'GT 118318795 Upstream 52bp
chr1 228459673 228459673 1 + C T KIRC 228459666 + 228459646 228459686 41 AAGGAGCAGGTGGTGTTTGCCAAGGATCAGCCGGTGCACAG AAGGAGCAGGTGGTGTTTGCCAAGGATTAGCCGGTGCACAG < 41bp 1 0.245162421190846 1 0.917844235897064 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228459666 chr1:228459673 stopgain 0.015 0 28 hm5C_associated_SNPs_24661 0 0 1 0 1 OBSCN chr1:228459626 3'AG 228459626 Downstream 48bp
chrX 107868987 107868987 1 + T G KIRC 107868973 + 107868953 107868993 41 GTCTCCCTGGACAGCCAGGTCTTATAGGACCTCCTGGACTT GTCTCCCTGGACAGCCAGGTCTTATAGGACCTCCGGGACTT < 41bp 1 0.173397376282864 1 0.0293625891208649 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107868973 chrX:107868987 synonymous SNV . 0 35 hm5C_associated_SNPs_24663 0 0 0 0 2 COL4A5 chrX:107868935 3'AG 107868935 Downstream 53bp
chrX 107868987 107868987 1 + T G KIRC 107868973 + 107868953 107868993 41 GTCTCCCTGGACAGCCAGGTCTTATAGGACCTCCTGGACTT GTCTCCCTGGACAGCCAGGTCTTATAGGACCTCCGGGACTT < 41bp 1 0.173397376282864 1 0.0293625891208649 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107868973 chrX:107868987 synonymous SNV . 0 35 hm5C_associated_SNPs_24663 0 0 0 0 2 COL4A5 chrX:107869024 5'GT 107869024 Upstream 38bp
chr16 700616 700616 1 + C G KIRC 700606 + 700586 700626 41 CTCGATCTGCAGGACGTTCTCCTGGTCTACCTGAACCGGTG CTCGATCTGCAGGACGTTCTCCTGGTCTACGTGAACCGGTG < 41bp 1 0.472448593050575 1 0.753773212432861 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:700606 chr16:700616 nonsynonymous SNV 0.127 1 31 hm5C_associated_SNPs_24664 0 0 0 0 2 WDR90 chr16:700539 3'AG 700539 Downstream 78bp
chr16 700616 700616 1 + C G KIRC 700606 + 700586 700626 41 CTCGATCTGCAGGACGTTCTCCTGGTCTACCTGAACCGGTG CTCGATCTGCAGGACGTTCTCCTGGTCTACGTGAACCGGTG < 41bp 1 0.472448593050575 1 0.753773212432861 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:700606 chr16:700616 nonsynonymous SNV 0.127 1 31 hm5C_associated_SNPs_24664 0 0 0 0 2 WDR90 chr16:700709 5'GT 700709 Upstream 94bp
chr19 1043790 1043790 1 + C G KIRC 1043784 + 1043764 1043804 41 TCCGGGAGGTGTGGGAGATGCTGGGACCCCGGATCTTCACC TCCGGGAGGTGTGGGAGATGCTGGGAGCCCGGATCTTCACC < 41bp 1 0.783728976360559 1 0.841580092906952 experiment 0.432542047278882 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1043784 chr19:1043790 nonsynonymous SNV 0.700 3 27 hm5C_associated_SNPs_24666 0 0 1 0 2 ABCA7 chr19:1043724 3'AG 1043724 Downstream 67bp
chr19 1043790 1043790 1 + C G KIRC 1043784 + 1043764 1043804 41 TCCGGGAGGTGTGGGAGATGCTGGGACCCCGGATCTTCACC TCCGGGAGGTGTGGGAGATGCTGGGAGCCCGGATCTTCACC < 41bp 1 0.783728976360559 1 0.841580092906952 experiment 0.432542047278882 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1043784 chr19:1043790 nonsynonymous SNV 0.700 3 27 hm5C_associated_SNPs_24666 0 0 1 0 2 ABCA7 chr19:1043840 5'GT 1043840 Upstream 51bp
chr19 35501023 35501023 1 + T G KIRC 35501031 + 35501011 35501051 41 TGCAGCGTGAGATCCTGCTCCAGGGCCGCCTCTACCTCTCT TGCAGCGTGAGAGCCTGCTCCAGGGCCGCCTCTACCTCTCT < 41bp 1 0.738419350744206 1 0.901587605476379 experiment 0.523161298511589 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35501031 chr19:35501023 nonsynonymous SNV 0.996 5 13 hm5C_associated_SNPs_24667 0 0 1 0 2 GRAMD1A chr19:35500996 3'AG 35500996 Downstream 28bp
chr19 35501023 35501023 1 + T G KIRC 35501031 + 35501011 35501051 41 TGCAGCGTGAGATCCTGCTCCAGGGCCGCCTCTACCTCTCT TGCAGCGTGAGAGCCTGCTCCAGGGCCGCCTCTACCTCTCT < 41bp 1 0.738419350744206 1 0.901587605476379 experiment 0.523161298511589 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35501031 chr19:35501023 nonsynonymous SNV 0.996 5 13 hm5C_associated_SNPs_24667 0 0 1 0 2 GRAMD1A chr19:35501099 5'GT 35501099 Upstream 77bp
chr6 117037431 117037431 1 + G A KIRC 117037411 + 117037391 117037431 41 AAATTCAAACAGACTCACAACAACAAGAAATGCCGTGTGGG AAATTCAAACAGACTCACAACAACAAGAAATGCCGTGTGGA < 41bp 1 0.549242728144356 1 0.416763424873352 experiment 0.901514543711287 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KPNA5 ENSG00000196911 CDS Human protein_coding chr6:117037411 chr6:117037431 nonsynonymous SNV 0.999 1 41 hm5C_associated_SNPs_24668 0 0 1 0 2 KPNA5 chr6:117037382 3'AG 117037382 Downstream 50bp
chr6 117037431 117037431 1 + G A KIRC 117037411 + 117037391 117037431 41 AAATTCAAACAGACTCACAACAACAAGAAATGCCGTGTGGG AAATTCAAACAGACTCACAACAACAAGAAATGCCGTGTGGA < 41bp 1 0.549242728144356 1 0.416763424873352 experiment 0.901514543711287 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KPNA5 ENSG00000196911 CDS Human protein_coding chr6:117037411 chr6:117037431 nonsynonymous SNV 0.999 1 41 hm5C_associated_SNPs_24668 0 0 1 0 2 KPNA5 chr6:117037481 5'GT 117037481 Upstream 51bp
chr19 34959981 34959981 1 + A C KIRC 34959978 + 34959958 34959998 41 TGACGTTCTCATAGTTGATTCAGATGAAGAAGATTCTTCAA TGACGTTCTCATAGTTGATTCAGCTGAAGAAGATTCTTCAA < 41bp 1 0.532812400694078 1 0.293211877346039 experiment 0.934375198611844 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBA2 ENSG00000126261 CDS Human protein_coding chr19:34959978 chr19:34959981 nonsynonymous SNV 0.989 1 24 hm5C_associated_SNPs_24669 0 0 1 0 1 UBA2 chr19:34959945 3'AG 34959945 Downstream 37bp
chr20 37632409 37632409 1 + T A KIRC 37632421 + 37632401 37632441 41 GAAACTGTTGTGTCGATGCTCATCGAGCAGGCTCGAGCACT GAAACTGTAGTGTCGATGCTCATCGAGCAGGCTCGAGCACT < 41bp 1 0.329288676467224 1 0.0361090898513794 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX35 ENSG00000101452 CDS Human protein_coding chr20:37632421 chr20:37632409 synonymous SNV . 0 9 hm5C_associated_SNPs_24671 0 0 1 0 1 DHX35 chr20:37632392 3'AG 37632392 Downstream 18bp
chr16 19548885 19548885 1 + A G KIRC 19548865 + 19548845 19548885 41 AAAAAGATACCCTAAGGGATCTGGCTTCGTTAACAAGAATA AAAAAGATACCCTAAGGGATCTGGCTTCGTTAACAAGAATG < 41bp 1 0.41444847765882 1 0.259268641471863 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCP110 ENSG00000103540 CDS Human protein_coding chr16:19548865 chr16:19548885 nonsynonymous SNV 0.991 0 41 hm5C_associated_SNPs_24673 0 0 1 0 1 CCP110 chr16:19548909 5'GT 19548909 Upstream 25bp
chr14 39645318 39645318 1 + T C KIRC 39645306 + 39645286 39645326 41 ATCCAAGCCAGATTGCTGGCCCTTTCTGGTCCTGGTGGAGG ATCCAAGCCAGATTGCTGGCCCTTTCTGGTCCCGGTGGAGG < 41bp 1 0.0239480909394246 1 0.0192565321922302 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PNN ENSG00000100941 CDS Human protein_coding chr14:39645306 chr14:39645318 synonymous SNV . 0 33 hm5C_associated_SNPs_24674 0 0 1 0 2 PNN chr14:39645282 3'AG 39645282 Downstream 37bp
chr14 39645318 39645318 1 + T C KIRC 39645306 + 39645286 39645326 41 ATCCAAGCCAGATTGCTGGCCCTTTCTGGTCCTGGTGGAGG ATCCAAGCCAGATTGCTGGCCCTTTCTGGTCCCGGTGGAGG < 41bp 1 0.0239480909394246 1 0.0192565321922302 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PNN ENSG00000100941 CDS Human protein_coding chr14:39645306 chr14:39645318 synonymous SNV . 0 33 hm5C_associated_SNPs_24674 0 0 1 0 2 PNN chr14:39645353 5'GT 39645353 Upstream 36bp
chr9 134354737 134354737 1 + T G KIRC 134354717 + 134354697 134354737 41 AGAACAACTTATGTCTGGAGCAAGGTGACGTGACCGTGCCT AGAACAACTTATGTCTGGAGCAAGGTGACGTGACCGTGCCG < 41bp 1 0.367558775675558 1 0.812266707420349 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134354717 chr9:134354737 synonymous SNV . 0 41 hm5C_associated_SNPs_24675 0 0 1 0 1 PRRC2B chr9:134354639 3'AG 134354639 Downstream 99bp
chr9 134354737 134354737 1 + T G KIRC 134354743 + 134354723 134354763 41 GACGTGACCGTGCCTGGCAGCAGCCTGGGCACTGAGATCTG GACGTGACCGTGCCGGGCAGCAGCCTGGGCACTGAGATCTG < 41bp 1 0.278912999871026 1 0.509276628494263 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134354743 chr9:134354737 synonymous SNV . 0 15 hm5C_associated_SNPs_24676 0 0 1 0 1 PRRC2B chr9:134354639 3'AG 134354639 Downstream 99bp
chr8 28906483 28906483 1 + T A KIRC 28906477 + 28906457 28906497 41 TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGA TGCTTTTTTCGAAGAAGCAGCAATCCAGGAGAGTCATGGGA < 41bp 1 0.0346286519571393 1 0.198637098073959 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906477 chr8:28906483 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_24677 0 0 1 0 4 HMBOX1 chr8:28906471 3'AG 28906471 Downstream 13bp
chr8 28906483 28906483 1 + T A KIRC 28906477 + 28906457 28906497 41 TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGA TGCTTTTTTCGAAGAAGCAGCAATCCAGGAGAGTCATGGGA < 41bp 1 0.0346286519571393 1 0.198637098073959 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906477 chr8:28906483 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_24677 0 0 1 0 4 HMBOX1 chr8:28906474 3'AG 28906474 Downstream 10bp
chr8 28906483 28906483 1 + T A KIRC 28906477 + 28906457 28906497 41 TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGA TGCTTTTTTCGAAGAAGCAGCAATCCAGGAGAGTCATGGGA < 41bp 1 0.0346286519571393 1 0.198637098073959 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906477 chr8:28906483 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_24677 0 0 1 0 4 HMBOX1 chr8:28906477 3'AG 28906477 Downstream 7bp
chr8 28906483 28906483 1 + T A KIRC 28906477 + 28906457 28906497 41 TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGA TGCTTTTTTCGAAGAAGCAGCAATCCAGGAGAGTCATGGGA < 41bp 1 0.0346286519571393 1 0.198637098073959 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906477 chr8:28906483 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_24677 0 0 1 0 4 HMBOX1 chr8:28906565 5'GT 28906565 Upstream 83bp
chr8 28906483 28906483 1 + T A KIRC 28906481 + 28906461 28906501 41 TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATAGA TTTTTCGAAGAAGCAGCAATCCAGGAGAGTCATGGGATAGA < 41bp 1 0.430601540845215 1 0.869272470474243 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906481 chr8:28906483 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_24678 0 0 1 0 4 HMBOX1 chr8:28906471 3'AG 28906471 Downstream 13bp
chr8 28906483 28906483 1 + T A KIRC 28906481 + 28906461 28906501 41 TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATAGA TTTTTCGAAGAAGCAGCAATCCAGGAGAGTCATGGGATAGA < 41bp 1 0.430601540845215 1 0.869272470474243 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906481 chr8:28906483 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_24678 0 0 1 0 4 HMBOX1 chr8:28906474 3'AG 28906474 Downstream 10bp
chr8 28906483 28906483 1 + T A KIRC 28906481 + 28906461 28906501 41 TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATAGA TTTTTCGAAGAAGCAGCAATCCAGGAGAGTCATGGGATAGA < 41bp 1 0.430601540845215 1 0.869272470474243 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906481 chr8:28906483 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_24678 0 0 1 0 4 HMBOX1 chr8:28906477 3'AG 28906477 Downstream 7bp
chr8 28906483 28906483 1 + T A KIRC 28906481 + 28906461 28906501 41 TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATAGA TTTTTCGAAGAAGCAGCAATCCAGGAGAGTCATGGGATAGA < 41bp 1 0.430601540845215 1 0.869272470474243 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906481 chr8:28906483 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_24678 0 0 1 0 4 HMBOX1 chr8:28906565 5'GT 28906565 Upstream 83bp
chr7 128846159 128846159 1 + C T KIRC 128846171 + 128846151 128846191 41 CACCTGCTCACCTGGTCACTCCCCTTTGTCCTCACTGTGGC CACCTGCTTACCTGGTCACTCCCCTTTGTCCTCACTGTGGC < 41bp 1 0.240808670381565 1 0.0341092050075531 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMO ENSG00000128602 CDS Human protein_coding chr7:128846171 chr7:128846159 synonymous SNV . 0 9 hm5C_associated_SNPs_24679 0 0 0 0 1 SMO chr7:128846210 5'GT 128846210 Upstream 52bp
chr17 30694855 30694855 1 + C A KIRC 30694868 + 30694848 30694888 41 CCTGCAACAACTACAGAACCCCCAAAGCCTACATTCCCTGC CCTGCAAAAACTACAGAACCCCCAAAGCCTACATTCCCTGC < 41bp 1 0.550669397392317 1 0.134352713823318 experiment 0.898661205215365 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30694868 chr17:30694855 nonsynonymous SNV 0.995 3 8 hm5C_associated_SNPs_24683 0 0 1 0 1 ZNF207 chr17:30694791 3'AG 30694791 Downstream 65bp
chr3 150264590 150264590 1 + A G KIRC 150264597 + 150264577 150264617 41 TTTCCGGGACAACATGGCGCCGTCCACGCCGCTCTTGACAG TTTCCGGGACAACGTGGCGCCGTCCACGCCGCTCTTGACAG < 41bp 1 0.244103420537657 1 0.327436029911041 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF2A ENSG00000144895 CDS Human protein_coding chr3:150264597 chr3:150264590 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_24684 0 0 1 0 1 EIF2A chr3:150264617 5'GT 150264617 Upstream 28bp
chr7 101891738 101891738 1 + A G KIRC 101891755 + 101891735 101891775 41 GGGAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGC GGGGGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGC < 41bp 1 0.659631120035012 1 0.696865797042847 experiment 0.680737759929977 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891755 chr7:101891738 nonsynonymous SNV 0.998 1 4 hm5C_associated_SNPs_24686 0 0 0 0 1 CUX1 chr7:101891692 3'AG 101891692 Downstream 47bp
chr7 101891738 101891738 1 + A G KIRC 101891757 + 101891737 101891777 41 GAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGCCC GGGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGCCC < 41bp 1 0.367854328226216 1 0.660177409648895 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891757 chr7:101891738 nonsynonymous SNV 0.998 1 2 hm5C_associated_SNPs_24687 0 0 0 0 1 CUX1 chr7:101891692 3'AG 101891692 Downstream 47bp
chr7 101891738 101891738 1 + A G KIRC 101891758 + 101891738 101891778 41 AGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGCCCG GGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGCCCG < 41bp 1 0.70609010405957 1 0.837858080863953 experiment 0.587819791880859 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891758 chr7:101891738 nonsynonymous SNV 0.998 1 1 hm5C_associated_SNPs_24688 0 0 0 0 1 CUX1 chr7:101891692 3'AG 101891692 Downstream 47bp
chr5 179025775 179025775 1 + T G KIRC 179025776 + 179025756 179025796 41 ACAGCACGAGAAAGACACTTCCTCTCTACTCAGGATGGAGC ACAGCACGAGAAAGACACTGCCTCTCTACTCAGGATGGAGC < 41bp 1 0.0299102955379555 1 0.0825672447681427 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179025776 chr5:179025775 nonsynonymous SNV 0.000 0 20 hm5C_associated_SNPs_24689 0 0 1 0 2 RUFY1 chr5:179025693 3'AG 179025693 Downstream 83bp
chr5 179025775 179025775 1 + T G KIRC 179025776 + 179025756 179025796 41 ACAGCACGAGAAAGACACTTCCTCTCTACTCAGGATGGAGC ACAGCACGAGAAAGACACTGCCTCTCTACTCAGGATGGAGC < 41bp 1 0.0299102955379555 1 0.0825672447681427 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179025776 chr5:179025775 nonsynonymous SNV 0.000 0 20 hm5C_associated_SNPs_24689 0 0 1 0 2 RUFY1 chr5:179025822 5'GT 179025822 Upstream 48bp
chr10 51580556 51580556 1 + G T KIRC 51580558 + 51580538 51580578 41 CATGTATGTGTTTCCTAGGTCAAAGCTCAGATTCACAGTTG CATGTATGTGTTTCCTAGTTCAAAGCTCAGATTCACAGTTG < 41bp 1 0.380062500083853 1 0.21131244301796 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NCOA4 ENSG00000138293 CDS Human other chr10:51580558 chr10:51580556 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_24691 0 0 1 0 1 NCOA4 chr10:51580556 3'AG 51580556 Downstream 1bp
chr7 128407619 128407619 1 + G T KIRC 128407599 + 128407579 128407619 41 TTGAGTTTCGGGATAAGAACCGTGATGGGAAGATGGACAAG TTGAGTTTCGGGATAAGAACCGTGATGGGAAGATGGACAAT < 41bp 1 0.785527863331138 1 0.415343582630157 experiment 0.428944273337724 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALU ENSG00000128595 CDS Human protein_coding chr7:128407599 chr7:128407619 nonsynonymous SNV 0.998 2 41 hm5C_associated_SNPs_24693 0 0 1 0 1 CALU chr7:128407709 5'GT 128407709 Upstream 91bp
chr17 73814848 73814848 1 + A C KIRC 73814851 + 73814831 73814871 41 GTCCCCGGCATGAATGCAAACGCTCTGCCCTTCTACCCCAC GTCCCCGGCATGAATGCCAACGCTCTGCCCTTCTACCCCAC < 41bp 1 0.268888365219361 1 0.425297021865845 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73814851 chr17:73814848 synonymous SNV . 0 18 hm5C_associated_SNPs_24694 0 0 0 0 1 UNK chr17:73814897 5'GT 73814897 Upstream 50bp
chr1 145509177 145509177 1 + G T KIRC 145509172 + 145509152 145509192 41 TTCTTTTTCCCTAGAGGTGGCCGAAGACGCAGCAGAAGTCC TTCTTTTTCCCTAGAGGTGGCCGAATACGCAGCAGAAGTCC < 41bp 1 0.182698646705946 1 0.196975648403168 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM8A ENSG00000131795 CDS Human other chr1:145509172 chr1:145509177 nonsynonymous SNV . 0 26 hm5C_associated_SNPs_24695 0 0 1 0 1 RBM8A chr1:145509166 3'AG 145509166 Downstream 12bp
chr1 145509177 145509177 1 + G T KIRC 145509191 + 145509171 145509211 41 GCCGAAGACGCAGCAGAAGTCCAGACCGGAGACGTCGCTGA GCCGAATACGCAGCAGAAGTCCAGACCGGAGACGTCGCTGA < 41bp 1 0.328045224211442 1 0.212762981653214 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM8A ENSG00000131795 CDS Human other chr1:145509191 chr1:145509177 nonsynonymous SNV . 0 7 hm5C_associated_SNPs_24696 0 0 1 0 1 RBM8A chr1:145509166 3'AG 145509166 Downstream 12bp
chr11 73638349 73638349 1 + A T KIRC 73638335 + 73638315 73638355 41 ATTCTTGTGTTTTAGGTAGCCACATGGGAGAAGCAGATCTA ATTCTTGTGTTTTAGGTAGCCACATGGGAGAAGCTGATCTA < 41bp 1 0.668309647148447 1 0.869242072105408 experiment 0.663380705703105 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PAAF1 ENSG00000175575 CDS Human protein_coding chr11:73638335 chr11:73638349 nonsynonymous SNV 0.997 1 35 hm5C_associated_SNPs_24697 0 0 1 0 1 PAAF1 chr11:73638330 3'AG 73638330 Downstream 20bp
chr7 101813771 101813771 1 + C A KIRC 101813790 + 101813770 101813810 41 GCTCTCATCGGCCAATCACTCCCTCCAGCTGGCCTCACAGA GATCTCATCGGCCAATCACTCCCTCCAGCTGGCCTCACAGA < 41bp 1 0.0464627629564133 1 0.594947576522827 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101813790 chr7:101813771 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_24740 0 0 1 0 2 CUX1 chr7:101813726 3'AG 101813726 Downstream 46bp
chr7 101813771 101813771 1 + C A KIRC 101813790 + 101813770 101813810 41 GCTCTCATCGGCCAATCACTCCCTCCAGCTGGCCTCACAGA GATCTCATCGGCCAATCACTCCCTCCAGCTGGCCTCACAGA < 41bp 1 0.0464627629564133 1 0.594947576522827 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101813790 chr7:101813771 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_24740 0 0 1 0 2 CUX1 chr7:101813830 5'GT 101813830 Upstream 60bp
chr14 65511120 65511120 1 + C T KIRC 65511109 + 65511089 65511129 41 CTGGTGGATGGCTGCTACTCCTTCTGGCAGGCGGGGCTCCT CTGGTGGATGGCTGCTACTCCTTCTGGCAGGTGGGGCTCCT < 41bp 1 0.470003593721967 1 0.0307300388813019 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65511109 chr14:65511120 nonsynonymous SNV 0.986 3 32 hm5C_associated_SNPs_24741 0 0 1 0 2 CHURC1-FNTB;FNTB chr14:65511029 3'AG 65511029 Downstream 92bp
chr14 65511120 65511120 1 + C T KIRC 65511109 + 65511089 65511129 41 CTGGTGGATGGCTGCTACTCCTTCTGGCAGGCGGGGCTCCT CTGGTGGATGGCTGCTACTCCTTCTGGCAGGTGGGGCTCCT < 41bp 1 0.470003593721967 1 0.0307300388813019 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65511109 chr14:65511120 nonsynonymous SNV 0.986 3 32 hm5C_associated_SNPs_24741 0 0 1 0 2 CHURC1-FNTB;FNTB chr14:65511161 5'GT 65511161 Upstream 42bp
chr1 16058448 16058448 1 + A C KIRC 16058464 + 16058444 16058484 41 GGTCATTCTCTCCGACCGGCCCTGCCTGGAGCTAAGTGCCG GGTCCTTCTCTCCGACCGGCCCTGCCTGGAGCTAAGTGCCG < 41bp 1 0.0624927432212068 1 0.046809583902359 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16058464 chr1:16058448 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_24742 0 0 1 0 2 PLEKHM2 chr1:16058384 3'AG 16058384 Downstream 65bp
chr1 16058448 16058448 1 + A C KIRC 16058464 + 16058444 16058484 41 GGTCATTCTCTCCGACCGGCCCTGCCTGGAGCTAAGTGCCG GGTCCTTCTCTCCGACCGGCCCTGCCTGGAGCTAAGTGCCG < 41bp 1 0.0624927432212068 1 0.046809583902359 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16058464 chr1:16058448 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_24742 0 0 1 0 2 PLEKHM2 chr1:16058543 5'GT 16058543 Upstream 96bp
chr3 31658488 31658488 1 + G C KIRC 31658471 + 31658451 31658491 41 TCTTGCAGTATCTGAGAGACCGATTAACAAAACAAGAGTTC TCTTGCAGTATCTGAGAGACCGATTAACAAAACAAGACTTC < 41bp 1 0.310051398687645 1 0.35896897315979 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STT3B ENSG00000163527 CDS Human protein_coding chr3:31658471 chr3:31658488 nonsynonymous SNV 0.996 1 38 hm5C_associated_SNPs_24743 0 0 1 0 2 STT3B chr3:31658421 3'AG 31658421 Downstream 68bp
chr3 31658488 31658488 1 + G C KIRC 31658471 + 31658451 31658491 41 TCTTGCAGTATCTGAGAGACCGATTAACAAAACAAGAGTTC TCTTGCAGTATCTGAGAGACCGATTAACAAAACAAGACTTC < 41bp 1 0.310051398687645 1 0.35896897315979 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STT3B ENSG00000163527 CDS Human protein_coding chr3:31658471 chr3:31658488 nonsynonymous SNV 0.996 1 38 hm5C_associated_SNPs_24743 0 0 1 0 2 STT3B chr3:31658567 5'GT 31658567 Upstream 80bp
chr5 176863471 176863471 1 + T G KIRC 176863468 + 176863448 176863488 41 GAGGTGAAGGAGCACCCCCTCTTTAAGAAGCTGAACTTCAA GAGGTGAAGGAGCACCCCCTCTTGAAGAAGCTGAACTTCAA < 41bp 1 0.709351687384545 1 0.628624618053436 experiment 0.58129662523091 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRK6 ENSG00000198055 CDS Human protein_coding chr5:176863468 chr5:176863471 nonsynonymous SNV 0.983 2 24 hm5C_associated_SNPs_24744 0 0 1 0 2 GRK6 chr5:176863394 3'AG 176863394 Downstream 78bp
chr5 176863471 176863471 1 + T G KIRC 176863468 + 176863448 176863488 41 GAGGTGAAGGAGCACCCCCTCTTTAAGAAGCTGAACTTCAA GAGGTGAAGGAGCACCCCCTCTTGAAGAAGCTGAACTTCAA < 41bp 1 0.709351687384545 1 0.628624618053436 experiment 0.58129662523091 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRK6 ENSG00000198055 CDS Human protein_coding chr5:176863468 chr5:176863471 nonsynonymous SNV 0.983 2 24 hm5C_associated_SNPs_24744 0 0 1 0 2 GRK6 chr5:176863531 5'GT 176863531 Upstream 61bp
chr4 79420893 79420893 1 + A C KIRC 79420912 + 79420892 79420932 41 GAAGAAGCTGCATACCAAGTCCGGGAACCCGCAGGCCCAGA GCAGAAGCTGCATACCAAGTCCGGGAACCCGCAGGCCCAGA < 41bp 1 0.234453714863027 1 0.770354747772217 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79420912 chr4:79420893 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_24745 0 0 1 0 1 FRAS1 chr4:79420875 3'AG 79420875 Downstream 19bp
chr19 804177 804177 1 + C A KIRC 804178 + 804158 804198 41 CTGCCCTTTGGGAAGGTCACCAACCTCCTGATGCTGAAGGG CTGCCCTTTGGGAAGGTCAACAACCTCCTGATGCTGAAGGG < 41bp 1 0.245272934957628 1 0.108772069215775 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804178 chr19:804177 nonsynonymous SNV 0.989 4 20 hm5C_associated_SNPs_24746 0 0 1 0 1 PTBP1 chr19:804208 5'GT 804208 Upstream 32bp
chr21 45560224 45560224 1 + G C KIRC 45560204 + 45560184 45560224 41 CGTGTCCTGAAGGAGTTCCACCAGGCCGGGAAGCCCATCGG CGTGTCCTGAAGGAGTTCCACCAGGCCGGGAAGCCCATCGC < 41bp 1 0.659474406229213 1 0.211061209440231 experiment 0.681051187541573 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45560204 chr21:45560224 nonsynonymous SNV 0.119 3 41 hm5C_associated_SNPs_24747 0 0 0 0 2 C21orf33 chr21:45560132 3'AG 45560132 Downstream 93bp
chr21 45560224 45560224 1 + G C KIRC 45560204 + 45560184 45560224 41 CGTGTCCTGAAGGAGTTCCACCAGGCCGGGAAGCCCATCGG CGTGTCCTGAAGGAGTTCCACCAGGCCGGGAAGCCCATCGC < 41bp 1 0.659474406229213 1 0.211061209440231 experiment 0.681051187541573 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45560204 chr21:45560224 nonsynonymous SNV 0.119 3 41 hm5C_associated_SNPs_24747 0 0 0 0 2 C21orf33 chr21:45560224 5'GT 45560224 Upstream 1bp
chr19 36221724 36221724 1 + C G KIRC 36221735 + 36221715 36221755 41 TGGAGGCTGCAGAGGAGAACCAGACCATTGTGCACAGCCCC TGGAGGCTGGAGAGGAGAACCAGACCATTGTGCACAGCCCC < 41bp 1 0.189155024014438 1 0.789258539676666 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36221735 chr19:36221724 nonsynonymous SNV 0.996 2 10 hm5C_associated_SNPs_24748 0 0 1 0 1 KMT2B chr19:36221768 5'GT 36221768 Upstream 45bp
chr11 65402821 65402821 1 + C T KIRC 65402802 + 65402782 65402822 41 GGTGACCCAGCATGGCGCAGCGCCATCCTCAGCAACACGCC GGTGACCCAGCATGGCGCAGCGCCATCCTCAGCAACACGTC < 41bp 1 0.411268649498144 1 0.470778673887253 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402802 chr11:65402821 nonsynonymous SNV 0.991 2 40 hm5C_associated_SNPs_24749 0 0 0 0 1 PCNX3 chr11:65402919 5'GT 65402919 Upstream 99bp
chr11 65402821 65402821 1 + C T KIRC 65402804 + 65402784 65402824 41 TGACCCAGCATGGCGCAGCGCCATCCTCAGCAACACGCCCT TGACCCAGCATGGCGCAGCGCCATCCTCAGCAACACGTCCT < 41bp 1 0.0138707333378553 1 0.0501847565174103 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402804 chr11:65402821 nonsynonymous SNV 0.991 2 38 hm5C_associated_SNPs_24750 0 0 0 0 1 PCNX3 chr11:65402919 5'GT 65402919 Upstream 99bp
chr11 65402821 65402821 1 + C T KIRC 65402805 + 65402785 65402825 41 GACCCAGCATGGCGCAGCGCCATCCTCAGCAACACGCCCTC GACCCAGCATGGCGCAGCGCCATCCTCAGCAACACGTCCTC < 41bp 1 0.0463556023659155 1 0.0556186139583588 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402805 chr11:65402821 nonsynonymous SNV 0.991 2 37 hm5C_associated_SNPs_24751 0 0 0 0 1 PCNX3 chr11:65402919 5'GT 65402919 Upstream 99bp
chr11 65402821 65402821 1 + C T KIRC 65402834 + 65402814 65402854 41 CAACACGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATG CAACACGTCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATG < 41bp 1 0.124011469474066 1 0.0738168954849243 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402834 chr11:65402821 nonsynonymous SNV 0.991 2 8 hm5C_associated_SNPs_24752 0 0 0 0 1 PCNX3 chr11:65402919 5'GT 65402919 Upstream 99bp
chr11 65402821 65402821 1 + C T KIRC 65402836 + 65402816 65402856 41 ACACGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGAT ACACGTCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGAT < 41bp 1 0.148339952367737 1 0.11758103966713 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402836 chr11:65402821 nonsynonymous SNV 0.991 2 6 hm5C_associated_SNPs_24753 0 0 0 0 1 PCNX3 chr11:65402919 5'GT 65402919 Upstream 99bp
chr11 65402821 65402821 1 + C T KIRC 65402839 + 65402819 65402859 41 CGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCC CGTCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCC < 41bp 1 0.299445021177878 1 0.91154944896698 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402839 chr11:65402821 nonsynonymous SNV 0.991 2 3 hm5C_associated_SNPs_24754 0 0 0 0 1 PCNX3 chr11:65402919 5'GT 65402919 Upstream 99bp
chr11 65402821 65402821 1 + C T KIRC 65402841 + 65402821 65402861 41 CCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCCTC TCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCCTC < 41bp 1 0.0652006792468373 1 0.0854894518852234 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402841 chr11:65402821 nonsynonymous SNV 0.991 2 1 hm5C_associated_SNPs_24755 0 0 0 0 1 PCNX3 chr11:65402919 5'GT 65402919 Upstream 99bp
chr15 36984363 36984363 1 + G T KIRC 36984350 + 36984330 36984370 41 ATTGTGAACGACTGCTGTTACGGACCACTAGTGGACTGCAT ATTGTGAACGACTGCTGTTACGGACCACTAGTGTACTGCAT < 41bp 1 0.504620639182619 1 0.857499837875366 experiment 0.990758721634761 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36984350 chr15:36984363 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_24756 0 0 0 0 2 C15orf41 chr15:36984327 3'AG 36984327 Downstream 37bp
chr15 36984363 36984363 1 + G T KIRC 36984350 + 36984330 36984370 41 ATTGTGAACGACTGCTGTTACGGACCACTAGTGGACTGCAT ATTGTGAACGACTGCTGTTACGGACCACTAGTGTACTGCAT < 41bp 1 0.504620639182619 1 0.857499837875366 experiment 0.990758721634761 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36984350 chr15:36984363 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_24756 0 0 0 0 2 C15orf41 chr15:36984376 5'GT 36984376 Upstream 14bp
chr7 150840457 150840457 1 + A G KIRC 150840477 + 150840457 150840497 41 AGTATGAACAGAAGCTCTTCCTGGCCCCACTGCCAAGCTCA GGTATGAACAGAAGCTCTTCCTGGCCCCACTGCCAAGCTCA < 41bp 1 0.386721745839713 1 0.247497797012329 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150840477 chr7:150840457 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_24757 0 0 1 0 1 AGAP3 chr7:150840428 3'AG 150840428 Downstream 30bp
chr19 3192504 3192504 1 + C T KIRC 3192510 + 3192490 3192530 41 CACGGAGGCGCGCACGATGGCGGCGGAGGTGCTGAGCCGCC CACGGAGGCGCGCATGATGGCGGCGGAGGTGCTGAGCCGCC < 41bp 1 0.764735998095999 1 0.850837171077728 experiment 0.470528003808002 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCLN ENSG00000125912 CDS Human protein_coding chr19:3192510 chr19:3192504 nonsynonymous SNV 0.459 4 15 hm5C_associated_SNPs_24758 0 0 0 0 1 NCLN chr19:3192468 3'AG 3192468 Downstream 37bp
chr19 3192504 3192504 1 + C T KIRC 3192513 + 3192493 3192533 41 GGAGGCGCGCACGATGGCGGCGGAGGTGCTGAGCCGCCGCT GGAGGCGCGCATGATGGCGGCGGAGGTGCTGAGCCGCCGCT < 41bp 1 0.699657264583716 1 0.837207794189453 experiment 0.600685470832569 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCLN ENSG00000125912 CDS Human protein_coding chr19:3192513 chr19:3192504 nonsynonymous SNV 0.459 4 12 hm5C_associated_SNPs_24759 0 0 0 0 1 NCLN chr19:3192468 3'AG 3192468 Downstream 37bp
chr17 53014035 53014035 1 + T C KIRC 53014053 + 53014033 53014073 41 TTTTGGAGCAAAATAAGAACCAGAAGGAAGCCACCAATGTA TTCTGGAGCAAAATAAGAACCAGAAGGAAGCCACCAATGTA < 41bp 1 0.648782756185046 1 0.613574624061584 experiment 0.702434487629909 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014053 chr17:53014035 synonymous SNV . 0 3 hm5C_associated_SNPs_24760 0 0 1 0 2 TOM1L1 chr17:53014010 3'AG 53014010 Downstream 26bp
chr17 53014035 53014035 1 + T C KIRC 53014053 + 53014033 53014073 41 TTTTGGAGCAAAATAAGAACCAGAAGGAAGCCACCAATGTA TTCTGGAGCAAAATAAGAACCAGAAGGAAGCCACCAATGTA < 41bp 1 0.648782756185046 1 0.613574624061584 experiment 0.702434487629909 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014053 chr17:53014035 synonymous SNV . 0 3 hm5C_associated_SNPs_24760 0 0 1 0 2 TOM1L1 chr17:53014070 5'GT 53014070 Upstream 36bp
chr19 3533330 3533330 1 + C A KIRC 3533341 + 3533321 3533361 41 GATCCTTGTCTGGAAGTACCCCTCCCTGACCCAGGTGGCCA GATCCTTGTATGGAAGTACCCCTCCCTGACCCAGGTGGCCA < 41bp 1 0.0894063095562136 1 0.0446474254131317 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3533341 chr19:3533330 synonymous SNV . 0 10 hm5C_associated_SNPs_24762 0 0 1 0 2 FZR1 chr19:3533292 3'AG 3533292 Downstream 39bp
chr19 3533330 3533330 1 + C A KIRC 3533341 + 3533321 3533361 41 GATCCTTGTCTGGAAGTACCCCTCCCTGACCCAGGTGGCCA GATCCTTGTATGGAAGTACCCCTCCCTGACCCAGGTGGCCA < 41bp 1 0.0894063095562136 1 0.0446474254131317 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3533341 chr19:3533330 synonymous SNV . 0 10 hm5C_associated_SNPs_24762 0 0 1 0 2 FZR1 chr19:3533396 5'GT 3533396 Upstream 67bp
chr22 32188047 32188047 1 + T C KIRC 32188034 + 32188014 32188054 41 CTTAGGAGAAGAACTGTAGTCATGAAGTGACAGTGGTCCTG CTTAGGAGAAGAACTGTAGTCATGAAGTGACAGCGGTCCTG < 41bp 1 0.592175246889081 1 0.326352715492249 experiment 0.815649506221838 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32188034 chr22:32188047 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_24763 0 0 1 0 2 DEPDC5 chr22:32188019 3'AG 32188019 Downstream 29bp
chr22 32188047 32188047 1 + T C KIRC 32188034 + 32188014 32188054 41 CTTAGGAGAAGAACTGTAGTCATGAAGTGACAGTGGTCCTG CTTAGGAGAAGAACTGTAGTCATGAAGTGACAGCGGTCCTG < 41bp 1 0.592175246889081 1 0.326352715492249 experiment 0.815649506221838 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32188034 chr22:32188047 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_24763 0 0 1 0 2 DEPDC5 chr22:32188088 5'GT 32188088 Upstream 42bp
chr6 133844277 133844277 1 + C T KIRC 133844283 + 133844263 133844303 41 TAGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTG TAGTTTAGGAGGTGTTTTCCCCATTGAGAATATTTACAGTG < 41bp 1 0.0877691508981243 1 0.217947751283646 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844283 chr6:133844277 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_24767 0 0 0 0 2 EYA4 chr6:133844194 3'AG 133844194 Downstream 84bp
chr6 133844277 133844277 1 + C T KIRC 133844283 + 133844263 133844303 41 TAGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTG TAGTTTAGGAGGTGTTTTCCCCATTGAGAATATTTACAGTG < 41bp 1 0.0877691508981243 1 0.217947751283646 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844283 chr6:133844277 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_24767 0 0 0 0 2 EYA4 chr6:133844315 5'GT 133844315 Upstream 39bp
chr6 133844277 133844277 1 + C T KIRC 133844284 + 133844264 133844304 41 AGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTGC AGTTTAGGAGGTGTTTTCCCCATTGAGAATATTTACAGTGC < 41bp 1 0.0865218104767065 1 0.202664941549301 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844284 chr6:133844277 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_24768 0 0 0 0 2 EYA4 chr6:133844194 3'AG 133844194 Downstream 84bp
chr6 133844277 133844277 1 + C T KIRC 133844284 + 133844264 133844304 41 AGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTGC AGTTTAGGAGGTGTTTTCCCCATTGAGAATATTTACAGTGC < 41bp 1 0.0865218104767065 1 0.202664941549301 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844284 chr6:133844277 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_24768 0 0 0 0 2 EYA4 chr6:133844315 5'GT 133844315 Upstream 39bp
chr1 2421297 2421297 1 + C A KIRC 2421285 + 2421265 2421305 41 GCTGATGAGATTGACGATGACTGCAAGCTCCTCAATGGGGA GCTGATGAGATTGACGATGACTGCAAGCTCCTAAATGGGGA < 41bp 1 0.729497965633604 1 0.165663212537766 experiment 0.541004068732792 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2421285 chr1:2421297 synonymous SNV . 0 33 hm5C_associated_SNPs_24769 0 0 0 0 2 PLCH2 chr1:2421199 3'AG 2421199 Downstream 99bp
chr1 2421297 2421297 1 + C A KIRC 2421285 + 2421265 2421305 41 GCTGATGAGATTGACGATGACTGCAAGCTCCTCAATGGGGA GCTGATGAGATTGACGATGACTGCAAGCTCCTAAATGGGGA < 41bp 1 0.729497965633604 1 0.165663212537766 experiment 0.541004068732792 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2421285 chr1:2421297 synonymous SNV . 0 33 hm5C_associated_SNPs_24769 0 0 0 0 2 PLCH2 chr1:2421306 5'GT 2421306 Upstream 10bp
chr12 71977609 71977609 1 + G T KIRC 71977616 + 71977596 71977636 41 GAACATGCTCACGGGAGTCTCCAGTGCCGTGCTGGCTGGTG GAACATGCTCACGTGAGTCTCCAGTGCCGTGCTGGCTGGTG < 41bp 1 0.376529001832534 1 0.553492426872253 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LGR5 ENSG00000139292 CDS Human protein_coding chr12:71977616 chr12:71977609 stopgain 0.006 1 14 hm5C_associated_SNPs_24770 0 0 1 0 1 LGR5 chr12:71977692 5'GT 71977692 Upstream 84bp
chr17 18137246 18137246 1 + C T KIRC 18137229 + 18137209 18137249 41 GCTCGAGGGGCAGACGCTTGCCCCAGGCGAGGTTCTGCGCA GCTCGAGGGGCAGACGCTTGCCCCAGGCGAGGTTCTGTGCA < 41bp 1 0.715317709662108 1 0.471333622932434 experiment 0.569364580675784 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18137229 chr17:18137246 nonsynonymous SNV 0.009 1 38 hm5C_associated_SNPs_24771 0 0 1 0 2 LLGL1 chr17:18137250 5'GT 18137250 Upstream 5bp
chr17 18137246 18137246 1 + C T KIRC 18137229 + 18137209 18137249 41 GCTCGAGGGGCAGACGCTTGCCCCAGGCGAGGTTCTGCGCA GCTCGAGGGGCAGACGCTTGCCCCAGGCGAGGTTCTGTGCA < 41bp 1 0.715317709662108 1 0.471333622932434 experiment 0.569364580675784 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18137229 chr17:18137246 nonsynonymous SNV 0.009 1 38 hm5C_associated_SNPs_24771 0 0 1 0 2 LLGL1 chr17:18137327 5'GT 18137327 Upstream 82bp
chr17 18137246 18137246 1 + C T KIRC 18137230 + 18137210 18137250 41 CTCGAGGGGCAGACGCTTGCCCCAGGCGAGGTTCTGCGCAG CTCGAGGGGCAGACGCTTGCCCCAGGCGAGGTTCTGTGCAG < 41bp 1 0.41552445038197 1 0.717115581035614 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18137230 chr17:18137246 nonsynonymous SNV 0.009 1 37 hm5C_associated_SNPs_24772 0 0 1 0 2 LLGL1 chr17:18137250 5'GT 18137250 Upstream 5bp
chr17 18137246 18137246 1 + C T KIRC 18137230 + 18137210 18137250 41 CTCGAGGGGCAGACGCTTGCCCCAGGCGAGGTTCTGCGCAG CTCGAGGGGCAGACGCTTGCCCCAGGCGAGGTTCTGTGCAG < 41bp 1 0.41552445038197 1 0.717115581035614 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18137230 chr17:18137246 nonsynonymous SNV 0.009 1 37 hm5C_associated_SNPs_24772 0 0 1 0 2 LLGL1 chr17:18137327 5'GT 18137327 Upstream 82bp
chr17 18137246 18137246 1 + C T KIRC 18137231 + 18137211 18137251 41 TCGAGGGGCAGACGCTTGCCCCAGGCGAGGTTCTGCGCAGG TCGAGGGGCAGACGCTTGCCCCAGGCGAGGTTCTGTGCAGG < 41bp 1 0.361382008046193 1 0.790323615074158 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18137231 chr17:18137246 nonsynonymous SNV 0.009 1 36 hm5C_associated_SNPs_24773 0 0 1 0 2 LLGL1 chr17:18137250 5'GT 18137250 Upstream 5bp
chr17 18137246 18137246 1 + C T KIRC 18137231 + 18137211 18137251 41 TCGAGGGGCAGACGCTTGCCCCAGGCGAGGTTCTGCGCAGG TCGAGGGGCAGACGCTTGCCCCAGGCGAGGTTCTGTGCAGG < 41bp 1 0.361382008046193 1 0.790323615074158 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18137231 chr17:18137246 nonsynonymous SNV 0.009 1 36 hm5C_associated_SNPs_24773 0 0 1 0 2 LLGL1 chr17:18137327 5'GT 18137327 Upstream 82bp
chr17 18137246 18137246 1 + C T KIRC 18137232 + 18137212 18137252 41 CGAGGGGCAGACGCTTGCCCCAGGCGAGGTTCTGCGCAGGT CGAGGGGCAGACGCTTGCCCCAGGCGAGGTTCTGTGCAGGT < 41bp 1 0.525912748230883 1 0.818464636802673 experiment 0.948174503538234 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18137232 chr17:18137246 nonsynonymous SNV 0.009 1 35 hm5C_associated_SNPs_24774 0 0 1 0 2 LLGL1 chr17:18137250 5'GT 18137250 Upstream 5bp
chr17 18137246 18137246 1 + C T KIRC 18137232 + 18137212 18137252 41 CGAGGGGCAGACGCTTGCCCCAGGCGAGGTTCTGCGCAGGT CGAGGGGCAGACGCTTGCCCCAGGCGAGGTTCTGTGCAGGT < 41bp 1 0.525912748230883 1 0.818464636802673 experiment 0.948174503538234 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18137232 chr17:18137246 nonsynonymous SNV 0.009 1 35 hm5C_associated_SNPs_24774 0 0 1 0 2 LLGL1 chr17:18137327 5'GT 18137327 Upstream 82bp
chr20 44045300 44045300 1 + G A KIRC 44045286 + 44045266 44045306 41 GGGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGT GGGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAAAGCTGT < 41bp 1 0.598667391959998 1 0.0901285111904144 experiment 0.802665216080005 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045286 chr20:44045300 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_24775 0 0 1 0 2 PIGT chr20:44045304 5'GT 44045304 Upstream 5bp
chr20 44045300 44045300 1 + G A KIRC 44045286 + 44045266 44045306 41 GGGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGT GGGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAAAGCTGT < 41bp 1 0.598667391959998 1 0.0901285111904144 experiment 0.802665216080005 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045286 chr20:44045300 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_24775 0 0 1 0 2 PIGT chr20:44045334 5'GT 44045334 Upstream 35bp
chr20 44045300 44045300 1 + G A KIRC 44045287 + 44045267 44045307 41 GGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTG GGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAAAGCTGTG < 41bp 1 0.179393519611595 1 0.0513637065887451 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045287 chr20:44045300 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_24776 0 0 1 0 2 PIGT chr20:44045304 5'GT 44045304 Upstream 5bp
chr20 44045300 44045300 1 + G A KIRC 44045287 + 44045267 44045307 41 GGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTG GGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAAAGCTGTG < 41bp 1 0.179393519611595 1 0.0513637065887451 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045287 chr20:44045300 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_24776 0 0 1 0 2 PIGT chr20:44045334 5'GT 44045334 Upstream 35bp
chr20 44045300 44045300 1 + G A KIRC 44045288 + 44045268 44045308 41 GGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTGG GGCCACCCTTCCTGCAGGCCCCATCAGGTGCAAAGCTGTGG < 41bp 1 0.124481738249787 1 0.120395392179489 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045288 chr20:44045300 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_24777 0 0 1 0 2 PIGT chr20:44045304 5'GT 44045304 Upstream 5bp
chr20 44045300 44045300 1 + G A KIRC 44045288 + 44045268 44045308 41 GGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTGG GGCCACCCTTCCTGCAGGCCCCATCAGGTGCAAAGCTGTGG < 41bp 1 0.124481738249787 1 0.120395392179489 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045288 chr20:44045300 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_24777 0 0 1 0 2 PIGT chr20:44045334 5'GT 44045334 Upstream 35bp
chr20 44045300 44045300 1 + G A KIRC 44045289 + 44045269 44045309 41 GCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTGGG GCCACCCTTCCTGCAGGCCCCATCAGGTGCAAAGCTGTGGG < 41bp 1 0.679779711318067 1 0.182470738887787 experiment 0.640440577363866 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045289 chr20:44045300 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_24778 0 0 1 0 2 PIGT chr20:44045304 5'GT 44045304 Upstream 5bp
chr20 44045300 44045300 1 + G A KIRC 44045289 + 44045269 44045309 41 GCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTGGG GCCACCCTTCCTGCAGGCCCCATCAGGTGCAAAGCTGTGGG < 41bp 1 0.679779711318067 1 0.182470738887787 experiment 0.640440577363866 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045289 chr20:44045300 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_24778 0 0 1 0 2 PIGT chr20:44045334 5'GT 44045334 Upstream 35bp
chr4 178262698 178262698 1 + C T KIRC 178262712 + 178262692 178262732 41 TCAGTGCCACTGCAGAATAACTGTGTGCCGCTTTGGGGACA TCAGTGTCACTGCAGAATAACTGTGTGCCGCTTTGGGGACA < 41bp 1 0.537372794896597 1 0.0660403668880463 experiment 0.925254410206805 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178262712 chr4:178262698 synonymous SNV . 0 7 hm5C_associated_SNPs_24779 0 0 1 0 2 NEIL3 chr4:178262630 3'AG 178262630 Downstream 69bp
chr4 178262698 178262698 1 + C T KIRC 178262712 + 178262692 178262732 41 TCAGTGCCACTGCAGAATAACTGTGTGCCGCTTTGGGGACA TCAGTGTCACTGCAGAATAACTGTGTGCCGCTTTGGGGACA < 41bp 1 0.537372794896597 1 0.0660403668880463 experiment 0.925254410206805 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178262712 chr4:178262698 synonymous SNV . 0 7 hm5C_associated_SNPs_24779 0 0 1 0 2 NEIL3 chr4:178262796 5'GT 178262796 Upstream 99bp
chr20 42680130 42680130 1 + C T KIRC 42680122 + 42680102 42680142 41 TCCCCATCACCGCCGGGGAGCAAGTCAGCGACCCCCTCTCC TCCCCATCACCGCCGGGGAGCAAGTCAGTGACCCCCTCTCC < 41bp 1 0.444657676110891 1 0.291256010532379 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42680122 chr20:42680130 nonsynonymous SNV 0.815 4 29 hm5C_associated_SNPs_24781 0 0 0 0 1 TOX2 chr20:42680185 5'GT 42680185 Upstream 56bp
chr12 57548478 57548478 1 + C T KIRC 57548481 + 57548461 57548501 41 CAGACCATCATCCAGGGCATCCTGGTGAGGGAGCTACTGTC CAGACCATCATCCAGGGTATCCTGGTGAGGGAGCTACTGTC < 41bp 1 0.0978864737412048 1 0.138855069875717 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57548481 chr12:57548478 synonymous SNV . 0 18 hm5C_associated_SNPs_24785 0 0 1 0 1 LRP1 chr12:57548484 5'GT 57548484 Upstream 7bp
chr6 27806755 27806755 1 + G A KIRP 27806746 + 27806726 27806766 41 AGACGGCCGTGCGCCTGCTGCTGCCAGGGGAGCTGGCCAAG AGACGGCCGTGCGCCTGCTGCTGCCAGGGAAGCTGGCCAAG < 41bp 1 0.625247926302723 1 0.0955115854740143 experiment 0.749504147394553 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806746 chr6:27806755 nonsynonymous SNV 0.992 1 30 hm5C_associated_SNPs_24787 0 0 1 0 2 HIST1H2BN chr6:27806816 5'GT 27806816 Upstream 62bp
chr6 27806755 27806755 1 + G A KIRP 27806746 + 27806726 27806766 41 AGACGGCCGTGCGCCTGCTGCTGCCAGGGGAGCTGGCCAAG AGACGGCCGTGCGCCTGCTGCTGCCAGGGAAGCTGGCCAAG < 41bp 1 0.625247926302723 1 0.0955115854740143 experiment 0.749504147394553 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806746 chr6:27806755 nonsynonymous SNV 0.992 1 30 hm5C_associated_SNPs_24787 0 0 1 0 2 HIST1H2BN chr6:27806843 5'GT 27806843 Upstream 89bp
chr1 173454563 173454563 1 + A G KIRP 173454543 + 173454523 173454563 41 AGAGCCCACAGAAAAGTTACCTTTTCCCATCATCGATGATA AGAGCCCACAGAAAAGTTACCTTTTCCCATCATCGATGATG < 41bp 1 0.0766763796075918 1 0.016430526971817 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173454543 chr1:173454563 nonsynonymous SNV 0.581 0 41 hm5C_associated_SNPs_24788 0 0 1 0 2 PRDX6 chr1:173454500 3'AG 173454500 Downstream 64bp
chr1 173454563 173454563 1 + A G KIRP 173454543 + 173454523 173454563 41 AGAGCCCACAGAAAAGTTACCTTTTCCCATCATCGATGATA AGAGCCCACAGAAAAGTTACCTTTTCCCATCATCGATGATG < 41bp 1 0.0766763796075918 1 0.016430526971817 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173454543 chr1:173454563 nonsynonymous SNV 0.581 0 41 hm5C_associated_SNPs_24788 0 0 1 0 2 PRDX6 chr1:173454646 5'GT 173454646 Upstream 84bp
chr17 37358657 37358657 1 + C T KIRP 37358663 + 37358643 37358683 41 ATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACA ATGCCGGAAAAACATCTTGGCCCGCCGGAAGGGCAGGCACA < 41bp 1 0.217751989190561 1 0.0335198640823364 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358663 chr17:37358657 nonsynonymous SNV 0.995 1 15 hm5C_associated_SNPs_24790 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 88bp
chr17 37358657 37358657 1 + C T KIRP 37358663 + 37358643 37358683 41 ATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACA ATGCCGGAAAAACATCTTGGCCCGCCGGAAGGGCAGGCACA < 41bp 1 0.217751989190561 1 0.0335198640823364 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358663 chr17:37358657 nonsynonymous SNV 0.995 1 15 hm5C_associated_SNPs_24790 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 36bp
chr17 37358657 37358657 1 + C T KIRP 37358664 + 37358644 37358684 41 TGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACAT TGCCGGAAAAACATCTTGGCCCGCCGGAAGGGCAGGCACAT < 41bp 1 0.23137398462548 1 0.0945356488227844 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358664 chr17:37358657 nonsynonymous SNV 0.995 1 14 hm5C_associated_SNPs_24791 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 88bp
chr17 37358657 37358657 1 + C T KIRP 37358664 + 37358644 37358684 41 TGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACAT TGCCGGAAAAACATCTTGGCCCGCCGGAAGGGCAGGCACAT < 41bp 1 0.23137398462548 1 0.0945356488227844 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358664 chr17:37358657 nonsynonymous SNV 0.995 1 14 hm5C_associated_SNPs_24791 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 36bp
chr17 37358657 37358657 1 + C T KIRP 37358665 + 37358645 37358685 41 GCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATG GCCGGAAAAACATCTTGGCCCGCCGGAAGGGCAGGCACATG < 41bp 1 0.762386634826766 1 0.0868091285228729 experiment 0.475226730346467 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358665 chr17:37358657 nonsynonymous SNV 0.995 1 13 hm5C_associated_SNPs_24792 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 88bp
chr17 37358657 37358657 1 + C T KIRP 37358665 + 37358645 37358685 41 GCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATG GCCGGAAAAACATCTTGGCCCGCCGGAAGGGCAGGCACATG < 41bp 1 0.762386634826766 1 0.0868091285228729 experiment 0.475226730346467 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358665 chr17:37358657 nonsynonymous SNV 0.995 1 13 hm5C_associated_SNPs_24792 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 36bp
chr17 37358657 37358657 1 + C T KIRP 37358667 + 37358647 37358687 41 CGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATGGG CGGAAAAACATCTTGGCCCGCCGGAAGGGCAGGCACATGGG < 41bp 1 0.773861128074265 1 0.411776602268219 experiment 0.452277743851469 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358667 chr17:37358657 nonsynonymous SNV 0.995 1 11 hm5C_associated_SNPs_24793 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 88bp
chr17 37358657 37358657 1 + C T KIRP 37358667 + 37358647 37358687 41 CGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATGGG CGGAAAAACATCTTGGCCCGCCGGAAGGGCAGGCACATGGG < 41bp 1 0.773861128074265 1 0.411776602268219 experiment 0.452277743851469 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358667 chr17:37358657 nonsynonymous SNV 0.995 1 11 hm5C_associated_SNPs_24793 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 36bp
chr1 2066777 2066777 1 + C T KIRP 2066765 + 2066745 2066785 41 CGTGCCAACGGCCACCTCTTCCAAGCCAAGCGCTTTAACAG CGTGCCAACGGCCACCTCTTCCAAGCCAAGCGTTTTAACAG < 41bp 1 0.274217872120941 1 0.215989232063293 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCZ ENSG00000067606 CDS Human protein_coding chr1:2066765 chr1:2066777 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_24794 0 0 1 0 1 PRKCZ chr1:2066701 3'AG 2066701 Downstream 77bp
chr2 235943690 235943690 1 + C T KIRP 235943692 + 235943672 235943712 41 CCAACTCCAATGGCCTCCCTCGCTGCAAGTCAGAGGGGACC CCAACTCCAATGGCCTCCTTCGCTGCAAGTCAGAGGGGACC < 41bp 1 0.225182496733573 1 0.184947639703751 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235943692 chr2:235943690 nonsynonymous SNV 0.800 1 19 hm5C_associated_SNPs_24796 0 0 1 0 2 SH3BP4 chr2:235943599 3'AG 235943599 Downstream 92bp
chr2 235943690 235943690 1 + C T KIRP 235943692 + 235943672 235943712 41 CCAACTCCAATGGCCTCCCTCGCTGCAAGTCAGAGGGGACC CCAACTCCAATGGCCTCCTTCGCTGCAAGTCAGAGGGGACC < 41bp 1 0.225182496733573 1 0.184947639703751 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235943692 chr2:235943690 nonsynonymous SNV 0.800 1 19 hm5C_associated_SNPs_24796 0 0 1 0 2 SH3BP4 chr2:235943764 5'GT 235943764 Upstream 75bp
chr3 47374713 47374713 1 + C A KIRP 47374698 + 47374678 47374718 41 ACGACCGGGAGCAGAGGGGTCCCTACCTGCCTGAGCTGCTG ACGACCGGGAGCAGAGGGGTCCCTACCTGCCTGAGATGCTG < 41bp 1 0.286102478203351 1 0.157342433929443 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47374698 chr3:47374713 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_24797 0 0 1 0 2 KLHL18 chr3:47374647 3'AG 47374647 Downstream 67bp
chr3 47374713 47374713 1 + C A KIRP 47374698 + 47374678 47374718 41 ACGACCGGGAGCAGAGGGGTCCCTACCTGCCTGAGCTGCTG ACGACCGGGAGCAGAGGGGTCCCTACCTGCCTGAGATGCTG < 41bp 1 0.286102478203351 1 0.157342433929443 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47374698 chr3:47374713 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_24797 0 0 1 0 2 KLHL18 chr3:47374807 5'GT 47374807 Upstream 95bp
chr16 2011289 2011289 1 + A T KIRP 2011269 + 2011249 2011289 41 ATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGGA ATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGGT < 41bp 1 0.570779159558711 1 0.362411141395569 experiment 0.858441680882578 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011269 chr16:2011289 nonsynonymous SNV 0.952 4 41 hm5C_associated_SNPs_24798 0 0 1 0 1 NDUFB10 chr16:2011292 5'GT 2011292 Upstream 4bp
chr16 2011289 2011289 1 + A T KIRP 2011276 + 2011256 2011296 41 GCATGTATGAAGCCGAAATGCAGTGGAAGAGGGACTAGTAC GCATGTATGAAGCCGAAATGCAGTGGAAGAGGGTCTAGTAC < 41bp 1 0.759780239742003 1 0.521542489528656 experiment 0.480439520515993 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011276 chr16:2011289 nonsynonymous SNV 0.952 4 34 hm5C_associated_SNPs_24799 0 0 1 0 1 NDUFB10 chr16:2011292 5'GT 2011292 Upstream 4bp
chr3 47374712 47374712 1 + G T KIRP 47374698 + 47374678 47374718 41 ACGACCGGGAGCAGAGGGGTCCCTACCTGCCTGAGCTGCTG ACGACCGGGAGCAGAGGGGTCCCTACCTGCCTGATCTGCTG < 41bp 1 0.344745138251203 1 0.220090955495834 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47374698 chr3:47374712 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_24801 0 0 1 0 2 KLHL18 chr3:47374647 3'AG 47374647 Downstream 66bp
chr3 47374712 47374712 1 + G T KIRP 47374698 + 47374678 47374718 41 ACGACCGGGAGCAGAGGGGTCCCTACCTGCCTGAGCTGCTG ACGACCGGGAGCAGAGGGGTCCCTACCTGCCTGATCTGCTG < 41bp 1 0.344745138251203 1 0.220090955495834 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47374698 chr3:47374712 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_24801 0 0 1 0 2 KLHL18 chr3:47374807 5'GT 47374807 Upstream 96bp
chr19 13002761 13002761 1 + C T KIRP 13002759 + 13002739 13002779 41 CTGCCAGGAGAGACTCATGCCTCGCATCCTGTTGGCCAATC CTGCCAGGAGAGACTCATGCCTTGCATCCTGTTGGCCAATC < 41bp 1 0.424320256799039 1 0.0716676115989685 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13002759 chr19:13002761 nonsynonymous SNV 0.838 5 23 hm5C_associated_SNPs_24802 0 0 0 0 1 GCDH chr19:13002788 5'GT 13002788 Upstream 28bp
chr22 30038229 30038229 1 + T C KIRP 30038248 + 30038228 30038268 41 CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG CCCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG < 41bp 1 0.690764824367775 1 0.506858289241791 experiment 0.61847035126445 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30038248 chr22:30038229 synonymous SNV . 0 2 hm5C_associated_SNPs_24803 0 0 1 0 2 NF2 chr22:30038191 3'AG 30038191 Downstream 39bp
chr22 30038229 30038229 1 + T C KIRP 30038248 + 30038228 30038268 41 CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG CCCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG < 41bp 1 0.690764824367775 1 0.506858289241791 experiment 0.61847035126445 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30038248 chr22:30038229 synonymous SNV . 0 2 hm5C_associated_SNPs_24803 0 0 1 0 2 NF2 chr22:30038274 5'GT 30038274 Upstream 46bp
chr9 96079890 96079890 1 + C T KIRP 96079899 + 96079879 96079919 41 CGGAGCCGCCCCGACCCTGTCCGTGCCCACACCAGGTACTG CGGAGCCGCCCTGACCCTGTCCGTGCCCACACCAGGTACTG < 41bp 1 0.117138970285505 1 0.0827859938144684 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WNK2 ENSG00000165238 CDS Human protein_coding chr9:96079899 chr9:96079890 nonsynonymous SNV 0.001 0 12 hm5C_associated_SNPs_24804 0 0 1 0 2 WNK2 chr9:96079802 3'AG 96079802 Downstream 89bp
chr9 96079890 96079890 1 + C T KIRP 96079899 + 96079879 96079919 41 CGGAGCCGCCCCGACCCTGTCCGTGCCCACACCAGGTACTG CGGAGCCGCCCTGACCCTGTCCGTGCCCACACCAGGTACTG < 41bp 1 0.117138970285505 1 0.0827859938144684 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WNK2 ENSG00000165238 CDS Human protein_coding chr9:96079899 chr9:96079890 nonsynonymous SNV 0.001 0 12 hm5C_associated_SNPs_24804 0 0 1 0 2 WNK2 chr9:96079913 5'GT 96079913 Upstream 24bp
chr17 65739904 65739904 1 + G A KIRP 65739907 + 65739887 65739927 41 TTGAAGTAAGTTTTCGGGAGCTACAGAAATTAAATCAAGAA TTGAAGTAAGTTTTCGGAAGCTACAGAAATTAAATCAAGAA < 41bp 1 0.5584722006584 1 0.513473331928253 experiment 0.8830555986832 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65739907 chr17:65739904 nonsynonymous SNV 0.997 2 18 hm5C_associated_SNPs_24805 0 0 1 0 1 NOL11 chr17:65739859 3'AG 65739859 Downstream 46bp
chr22 30038228 30038228 1 + C A KIRP 30038248 + 30038228 30038268 41 CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG ATCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG < 41bp 1 0.691698926372146 1 0.582861006259918 experiment 0.616602147255708 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30038248 chr22:30038228 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_24806 0 0 1 0 2 NF2 chr22:30038191 3'AG 30038191 Downstream 38bp
chr22 30038228 30038228 1 + C A KIRP 30038248 + 30038228 30038268 41 CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG ATCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG < 41bp 1 0.691698926372146 1 0.582861006259918 experiment 0.616602147255708 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30038248 chr22:30038228 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_24806 0 0 1 0 2 NF2 chr22:30038274 5'GT 30038274 Upstream 47bp
chr19 45162149 45162149 1 + C T KIRP 45162132 + 45162112 45162152 41 TCTATTGGTCCAAATGTTCCCGTGAGGTCCTTTGGCACTGT TCTATTGGTCCAAATGTTCCCGTGAGGTCCTTTGGCATTGT < 41bp 1 0.612688881127462 1 0.296333312988281 experiment 0.774622237745076 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45162132 chr19:45162149 synonymous SNV . 0 38 hm5C_associated_SNPs_24807 0 0 1 0 1 PVR chr19:45162168 5'GT 45162168 Upstream 20bp
chr19 45162149 45162149 1 + C T KIRP 45162140 + 45162120 45162160 41 TCCAAATGTTCCCGTGAGGTCCTTTGGCACTGTCATCTGTG TCCAAATGTTCCCGTGAGGTCCTTTGGCATTGTCATCTGTG < 41bp 1 0.0212745875314992 1 0.047462671995163 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45162140 chr19:45162149 synonymous SNV . 0 30 hm5C_associated_SNPs_24808 0 0 1 0 1 PVR chr19:45162168 5'GT 45162168 Upstream 20bp
chr9 139734263 139734263 1 + G A KIRP 139734259 + 139734239 139734279 41 GCCTTCAGACTGAAGAATGACTCGGACCTCTTCGGGCTGGG GCCTTCAGACTGAAGAATGACTCGAACCTCTTCGGGCTGGG < 41bp 1 0.796894038608816 1 0.856163024902344 experiment 0.406211922782368 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734259 chr9:139734263 nonsynonymous SNV 0.051 4 25 hm5C_associated_SNPs_24809 0 0 1 0 1 RABL6 chr9:139734317 5'GT 139734317 Upstream 55bp
chr9 139734263 139734263 1 + G A KIRP 139734265 + 139734245 139734285 41 AGACTGAAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGA AGACTGAAGAATGACTCGAACCTCTTCGGGCTGGGGCTGGA < 41bp 1 0.0703436877647022 1 0.054002434015274 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734265 chr9:139734263 nonsynonymous SNV 0.051 4 19 hm5C_associated_SNPs_24810 0 0 1 0 1 RABL6 chr9:139734317 5'GT 139734317 Upstream 55bp
chr9 139734263 139734263 1 + G A KIRP 139734266 + 139734246 139734286 41 GACTGAAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGAG GACTGAAGAATGACTCGAACCTCTTCGGGCTGGGGCTGGAG < 41bp 1 0.154798200022533 1 0.171218246221542 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734266 chr9:139734263 nonsynonymous SNV 0.051 4 18 hm5C_associated_SNPs_24811 0 0 1 0 1 RABL6 chr9:139734317 5'GT 139734317 Upstream 55bp
chr9 139734263 139734263 1 + G A KIRP 139734271 + 139734251 139734291 41 AAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGAGGAGGC AAGAATGACTCGAACCTCTTCGGGCTGGGGCTGGAGGAGGC < 41bp 1 0.620461602052279 1 0.862050175666809 experiment 0.759076795895441 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734271 chr9:139734263 nonsynonymous SNV 0.051 4 13 hm5C_associated_SNPs_24812 0 0 1 0 1 RABL6 chr9:139734317 5'GT 139734317 Upstream 55bp
chr11 61111339 61111339 1 + A G KIRP 61111346 + 61111326 61111366 41 AGATGCTGAAACCACTGCAGCAGCCTGGCCTAACGTGGCTG AGATGCTGAAACCGCTGCAGCAGCCTGGCCTAACGTGGCTG < 41bp 1 0.293057303136674 1 0.367790877819061 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61111346 chr11:61111339 nonsynonymous SNV 0.720 0 14 hm5C_associated_SNPs_24814 0 0 1 0 1 TKFC chr11:61111328 3'AG 61111328 Downstream 12bp
chr16 89627425 89627425 1 + C T KIRP 89627445 + 89627425 89627465 41 CGGCGCGTGGCCACGTGGTTCAACCAGCCGGCCCGTAAGAT TGGCGCGTGGCCACGTGGTTCAACCAGCCGGCCCGTAAGAT < 41bp 1 0.328800986953501 1 0.0766088664531708 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627445 chr16:89627425 nonsynonymous SNV 0.992 3 1 hm5C_associated_SNPs_24815 0 0 1 0 1 RPL13 chr16:89627471 5'GT 89627471 Upstream 47bp
chr19 49714007 49714007 1 + G T KIRP 49713999 + 49713979 49714019 41 CTAAGGAAGCCGAGCGGAAGCTGCTAACGTGGGAATCGGTG CTAAGGAAGCCGAGCGGAAGCTGCTAACTTGGGAATCGGTG < 41bp 1 0.397956753529682 1 0.29239284992218 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49713999 chr19:49714007 synonymous SNV . 0 29 hm5C_associated_SNPs_24816 0 0 0 0 2 TRPM4 chr19:49713967 3'AG 49713967 Downstream 41bp
chr19 49714007 49714007 1 + G T KIRP 49713999 + 49713979 49714019 41 CTAAGGAAGCCGAGCGGAAGCTGCTAACGTGGGAATCGGTG CTAAGGAAGCCGAGCGGAAGCTGCTAACTTGGGAATCGGTG < 41bp 1 0.397956753529682 1 0.29239284992218 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49713999 chr19:49714007 synonymous SNV . 0 29 hm5C_associated_SNPs_24816 0 0 0 0 2 TRPM4 chr19:49714099 5'GT 49714099 Upstream 93bp
chr1 223900487 223900487 1 + C A KIRP 223900495 + 223900475 223900515 41 CTCTTCCAGGACCCGTCCTTCCCGGCCATCCCCTCGGCCCT CTCTTCCAGGACACGTCCTTCCCGGCCATCCCCTCGGCCCT < 41bp 1 0.510233827293887 1 0.200605422258377 experiment 0.979532345412225 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223900495 chr1:223900487 nonsynonymous SNV 0.122 1 13 hm5C_associated_SNPs_24819 0 0 1 0 1 CAPN2 chr1:223900579 5'GT 223900579 Upstream 93bp
chr9 131386741 131386741 1 + G A KIRP 131386723 + 131386703 131386743 41 CTGGATGAGAACTCGGCCTTCCTTCAGTTCAACTGGAAGGC CTGGATGAGAACTCGGCCTTCCTTCAGTTCAACTGGAAAGC < 41bp 1 0.0137992253841971 1 0.0473178029060364 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131386723 chr9:131386741 synonymous SNV . 0 39 hm5C_associated_SNPs_24820 0 0 1 0 1 SPTAN1 chr9:131386766 5'GT 131386766 Upstream 26bp
chr6 31593324 31593324 1 + G A KIRP 31593332 + 31593312 31593352 41 GTCATGATCCCCGGGGTGGGCTACAGCCTTCAGGCCCACCC GTCATGATCCCCAGGGTGGGCTACAGCCTTCAGGCCCACCC < 41bp 1 0.613246600207338 1 0.440519005060196 experiment 0.773506799585324 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593332 chr6:31593324 nonsynonymous SNV 0.977 2 13 hm5C_associated_SNPs_24821 0 0 1 0 2 PRRC2A chr6:31593237 3'AG 31593237 Downstream 88bp
chr6 31593324 31593324 1 + G A KIRP 31593332 + 31593312 31593352 41 GTCATGATCCCCGGGGTGGGCTACAGCCTTCAGGCCCACCC GTCATGATCCCCAGGGTGGGCTACAGCCTTCAGGCCCACCC < 41bp 1 0.613246600207338 1 0.440519005060196 experiment 0.773506799585324 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593332 chr6:31593324 nonsynonymous SNV 0.977 2 13 hm5C_associated_SNPs_24821 0 0 1 0 2 PRRC2A chr6:31593388 5'GT 31593388 Upstream 65bp
chr2 233428989 233428989 1 + G T KIRP 233428984 + 233428964 233429004 41 AGTTCTGGAGGTTTTATAGCCACATGGTACGTCCTGGGGAC AGTTCTGGAGGTTTTATAGCCACATTGTACGTCCTGGGGAC < 41bp 1 0.707560885577924 1 0.739013135433197 experiment 0.584878228844152 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control EIF4E2 ENSG00000135930 CDS Human protein_coding chr2:233428984 chr2:233428989 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_24825 0 0 1 0 2 EIF4E2 chr2:233428957 3'AG 233428957 Downstream 33bp
chr2 233428989 233428989 1 + G T KIRP 233428984 + 233428964 233429004 41 AGTTCTGGAGGTTTTATAGCCACATGGTACGTCCTGGGGAC AGTTCTGGAGGTTTTATAGCCACATTGTACGTCCTGGGGAC < 41bp 1 0.707560885577924 1 0.739013135433197 experiment 0.584878228844152 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control EIF4E2 ENSG00000135930 CDS Human protein_coding chr2:233428984 chr2:233428989 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_24825 0 0 1 0 2 EIF4E2 chr2:233429061 5'GT 233429061 Upstream 73bp
chr17 57728648 57728648 1 + G T KIRP 57728643 + 57728623 57728663 41 AGTGGATGTCTTCTTTCCTCCAGAAGCACAAAATGATTTTC AGTGGATGTCTTCTTTCCTCCAGAATCACAAAATGATTTTC < 41bp 1 0.474788196486076 1 0.742417931556702 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57728643 chr17:57728648 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_24826 0 0 1 0 2 CLTC chr17:57728564 3'AG 57728564 Downstream 85bp
chr17 57728648 57728648 1 + G T KIRP 57728643 + 57728623 57728663 41 AGTGGATGTCTTCTTTCCTCCAGAAGCACAAAATGATTTTC AGTGGATGTCTTCTTTCCTCCAGAATCACAAAATGATTTTC < 41bp 1 0.474788196486076 1 0.742417931556702 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57728643 chr17:57728648 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_24826 0 0 1 0 2 CLTC chr17:57728677 5'GT 57728677 Upstream 30bp
chr4 54244014 54244014 1 + C T KIRP 54244030 + 54244010 54244050 41 CGGCCGGCGAGGTCGAGCGCCTAGTGTCGGAGCTGAGCGGC CGGCTGGCGAGGTCGAGCGCCTAGTGTCGGAGCTGAGCGGC < 41bp 1 0.745322665143661 1 0.448535680770874 experiment 0.509354669712677 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FIP1L1 ENSG00000145216 CDS Human protein_coding chr4:54244030 chr4:54244014 synonymous SNV . 0 5 hm5C_associated_SNPs_24827 0 0 1 0 1 FIP1L1 chr4:54244090 5'GT 54244090 Upstream 77bp
chr3 49737921 49737921 1 + A G KIRP 49737932 + 49737912 49737952 41 AGGTACAAGATTGCCTCAAGCAGTTGATGATGTCTCTGCTT AGGTACAAGGTTGCCTCAAGCAGTTGATGATGTCTCTGCTT < 41bp 1 0.308615236738303 1 0.493201732635498 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49737932 chr3:49737921 nonsynonymous SNV 0.994 0 10 hm5C_associated_SNPs_24828 0 0 1 0 2 RNF123 chr3:49737905 3'AG 49737905 Downstream 17bp
chr3 49737921 49737921 1 + A G KIRP 49737932 + 49737912 49737952 41 AGGTACAAGATTGCCTCAAGCAGTTGATGATGTCTCTGCTT AGGTACAAGGTTGCCTCAAGCAGTTGATGATGTCTCTGCTT < 41bp 1 0.308615236738303 1 0.493201732635498 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49737932 chr3:49737921 nonsynonymous SNV 0.994 0 10 hm5C_associated_SNPs_24828 0 0 1 0 2 RNF123 chr3:49737997 5'GT 49737997 Upstream 77bp
chr16 70163023 70163023 1 + A T KIRP 70163015 + 70162995 70163035 41 CTTGCCCTGGCAAGTGCTGCCTCCCAAAATGGTGAGCAGGT CTTGCCCTGGCAAGTGCTGCCTCCCAAATTGGTGAGCAGGT < 41bp 1 0.177345770065868 1 0.212012410163879 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70163015 chr16:70163023 nonsynonymous SNV 0.960 1 29 hm5C_associated_SNPs_24829 0 0 0 0 1 PDPR chr16:70163025 5'GT 70163025 Upstream 3bp
chr17 45682709 45682709 1 + G A KIRP 45682702 + 45682682 45682722 41 GTTTTTTCCTATCCCAGGCTCGAGCTGGAATCATTAGCACT GTTTTTTCCTATCCCAGGCTCGAGCTGAAATCATTAGCACT < 41bp 1 0.189459571370427 1 0.628718912601471 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45682702 chr17:45682709 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_24838 0 0 1 0 1 NPEPPS chr17:45682699 3'AG 45682699 Downstream 11bp
chr17 45682709 45682709 1 + G A KIRP 45682706 + 45682686 45682726 41 TTTCCTATCCCAGGCTCGAGCTGGAATCATTAGCACTGTAG TTTCCTATCCCAGGCTCGAGCTGAAATCATTAGCACTGTAG < 41bp 1 0.558938439360815 1 0.331201255321503 experiment 0.882123121278371 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45682706 chr17:45682709 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_24839 0 0 1 0 1 NPEPPS chr17:45682699 3'AG 45682699 Downstream 11bp
chr10 51579175 51579175 1 + A C KIRP 51579188 + 51579168 51579208 41 CAGCTCCAGTAATAGAGAACCCCTTTTGAGGTGTAGTGATG CAGCTCCCGTAATAGAGAACCCCTTTTGAGGTGTAGTGATG < 41bp 1 0.103059746067022 1 0.0486731231212616 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51579188 chr10:51579175 nonsynonymous SNV . 0 8 hm5C_associated_SNPs_24840 0 0 0 0 1 NCOA4 chr10:51579128 3'AG 51579128 Downstream 48bp
chr10 51579175 51579175 1 + A C KIRP 51579190 + 51579170 51579210 41 GCTCCAGTAATAGAGAACCCCTTTTGAGGTGTAGTGATGCA GCTCCCGTAATAGAGAACCCCTTTTGAGGTGTAGTGATGCA < 41bp 1 0.0986403670250866 1 0.0282219052314758 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCOA4 ENSG00000138293 CDS Human other chr10:51579190 chr10:51579175 nonsynonymous SNV . 0 6 hm5C_associated_SNPs_24841 0 0 0 0 1 NCOA4 chr10:51579128 3'AG 51579128 Downstream 48bp
chr9 112705604 112705604 1 + A G KIRP 112705590 + 112705570 112705610 41 TGAGCTTGTGTCCGGGAGGCCGGTCTCAGACACCACAGAGC TGAGCTTGTGTCCGGGAGGCCGGTCTCAGACACCGCAGAGC < 41bp 1 0.115673660490744 1 0.395631492137909 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PALM2 ENSG00000157654;ENSG00000243444 CDS Human other chr9:112705590 chr9:112705604 nonsynonymous SNV 0.998 0 35 hm5C_associated_SNPs_24842 0 0 1 0 1 PALM2 chr9:112705661 5'GT 112705661 Upstream 58bp
chr5 54635905 54635905 1 + A G KIRP 54635889 + 54635869 54635909 41 CAGCGTGTAATATTTACCAGCCCAATTAAGGCTCTGAGTAA CAGCGTGTAATATTTACCAGCCCAATTAAGGCTCTGGGTAA < 41bp 1 0.376199141976571 1 0.247075617313385 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54635889 chr5:54635905 nonsynonymous SNV 0.996 4 37 hm5C_associated_SNPs_24843 0 0 1 0 1 SKIV2L2 chr5:54635838 3'AG 54635838 Downstream 68bp
chr1 40724033 40724033 1 + G C KIRP 40724018 + 40723998 40724038 41 ATCTTCGGGGCCGTGCTGCTCTTTTCCTGGACAGTGTATCT ATCTTCGGGGCCGTGCTGCTCTTTTCCTGGACAGTCTATCT < 41bp 1 0.239232011907652 1 0.0194345712661743 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMPSTE24 ENSG00000084073 CDS Human protein_coding chr1:40724018 chr1:40724033 synonymous SNV . 0 36 hm5C_associated_SNPs_24844 0 0 1 0 1 ZMPSTE24 chr1:40724066 5'GT 40724066 Upstream 34bp
chr12 57624649 57624649 1 + C G KIRP 57624668 + 57624648 57624688 41 CCAGACTCAGACTGGGGAAGCAAACAGGGGCTGGACAGGCC CGAGACTCAGACTGGGGAAGCAAACAGGGGCTGGACAGGCC < 41bp 1 0.387130128775254 1 0.201165169477463 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57624668 chr12:57624649 nonsynonymous SNV 0.986 0 2 hm5C_associated_SNPs_24847 0 0 1 0 1 SHMT2 chr12:57624586 3'AG 57624586 Downstream 64bp
chr1 10328310 10328310 1 + T C KIRP 10328306 + 10328286 10328326 41 AAACACGATAATGAGACCAACCTTTCCACTGAGAAGGTAGG AAACACGATAATGAGACCAACCTTCCCACTGAGAAGGTAGG < 41bp 1 0.00201730119774735 1 0.0846464335918427 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10328306 chr1:10328310 nonsynonymous SNV 0.975 3 25 hm5C_associated_SNPs_24848 0 0 1 0 1 KIF1B chr1:10328321 5'GT 10328321 Upstream 12bp
chr7 104750955 104750955 1 + G T KIRP 104750943 + 104750923 104750963 41 GGGGGAGAATCACCATGTGTCTCATGTTCACCGAGTCATGT GGGGGAGAATCACCATGTGTCTCATGTTCACCTAGTCATGT < 41bp 1 0.331206192811925 1 0.0166846215724945 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2E ENSG00000005483 CDS Human protein_coding chr7:104750943 chr7:104750955 synonymous SNV . 0 33 hm5C_associated_SNPs_24849 0 0 1 0 2 KMT2E chr7:104750924 3'AG 104750924 Downstream 32bp
chr7 104750955 104750955 1 + G T KIRP 104750943 + 104750923 104750963 41 GGGGGAGAATCACCATGTGTCTCATGTTCACCGAGTCATGT GGGGGAGAATCACCATGTGTCTCATGTTCACCTAGTCATGT < 41bp 1 0.331206192811925 1 0.0166846215724945 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2E ENSG00000005483 CDS Human protein_coding chr7:104750943 chr7:104750955 synonymous SNV . 0 33 hm5C_associated_SNPs_24849 0 0 1 0 2 KMT2E chr7:104751049 5'GT 104751049 Upstream 95bp
chr16 1370453 1370453 1 + A G KIRP 1370441 + 1370421 1370461 41 TTTTTGTCTCTGGCACAGATCCTATTAGGAATACAGGAACT TTTTTGTCTCTGGCACAGATCCTATTAGGAATGCAGGAACT < 41bp 1 0.0417359821600208 1 0.109252274036407 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE2I ENSG00000103275 CDS Human protein_coding chr16:1370441 chr16:1370453 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_24850 0 0 1 0 2 UBE2I chr16:1370439 3'AG 1370439 Downstream 15bp
chr16 1370453 1370453 1 + A G KIRP 1370441 + 1370421 1370461 41 TTTTTGTCTCTGGCACAGATCCTATTAGGAATACAGGAACT TTTTTGTCTCTGGCACAGATCCTATTAGGAATGCAGGAACT < 41bp 1 0.0417359821600208 1 0.109252274036407 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE2I ENSG00000103275 CDS Human protein_coding chr16:1370441 chr16:1370453 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_24850 0 0 1 0 2 UBE2I chr16:1370518 5'GT 1370518 Upstream 66bp
chr11 48142728 48142728 1 + T G KIRP 48142738 + 48142718 48142758 41 CATCACAGGCTTACGTCCAGCGACTTCATATGTATTCTCCA CATCACAGGCGTACGTCCAGCGACTTCATATGTATTCTCCA < 41bp 1 0.174488341106393 1 0.0745907425880432 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48142738 chr11:48142728 nonsynonymous SNV 0.175 4 11 hm5C_associated_SNPs_24851 0 0 0 0 1 PTPRJ chr11:48142818 5'GT 48142818 Upstream 91bp
chr1 26150129 26150129 1 + C T KIRP 26150131 + 26150111 26150151 41 GCTGTCTCCGTCTCTTTGCTCCAGACCATCCCAATCTGGCA GCTGTCTCCGTCTCTTTGTTCCAGACCATCCCAATCTGGCA < 41bp 1 0.435188665669279 1 0.760464072227478 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTFR1L ENSG00000117640 UTR5 Human protein_coding chr1:26150131 chr1:26150129 . . 0 19 hm5C_associated_SNPs_24852 0 0 1 0 1 MTFR1L chr1:26150112 3'AG 26150112 Downstream 18bp
chr6 43155541 43155541 1 + A G KIRP 43155540 + 43155520 43155560 41 CTCAGTAGTCGATTTGAGGGCAGCACTCTCAATGACCTGCT CTCAGTAGTCGATTTGAGGGCGGCACTCTCAATGACCTGCT < 41bp 1 0.593510150456088 1 0.149858385324478 experiment 0.812979699087823 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43155540 chr6:43155541 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_24853 0 0 0 0 1 CUL9 chr6:43155451 3'AG 43155451 Downstream 91bp
chr14 102478240 102478240 1 + T C KIRP 102478245 + 102478225 102478265 41 ATCAGATCACCCAGATCAATCATGGCCTGATGATGGTGGGG ATCAGATCACCCAGACCAATCATGGCCTGATGATGGTGGGG < 41bp 1 0.180488733474168 1 0.391990423202515 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478245 chr14:102478240 nonsynonymous SNV 0.998 2 16 hm5C_associated_SNPs_24854 0 0 1 0 1 DYNC1H1 chr14:102478212 3'AG 102478212 Downstream 29bp
chr14 102478240 102478240 1 + T C KIRP 102478250 + 102478230 102478270 41 ATCACCCAGATCAATCATGGCCTGATGATGGTGGGGCCCTC ATCACCCAGACCAATCATGGCCTGATGATGGTGGGGCCCTC < 41bp 1 0.100599924538722 1 0.0856868326663971 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478250 chr14:102478240 nonsynonymous SNV 0.998 2 11 hm5C_associated_SNPs_24855 0 0 1 0 1 DYNC1H1 chr14:102478212 3'AG 102478212 Downstream 29bp
chr2 233671361 233671361 1 + T A KIRP 233671347 + 233671327 233671367 41 GGGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATG GGGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCACATATG < 41bp 1 0.104126312421811 1 0.0478638708591461 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671347 chr2:233671361 synonymous SNV . 0 35 hm5C_associated_SNPs_24856 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 7bp
chr2 233671361 233671361 1 + T A KIRP 233671348 + 233671328 233671368 41 GGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGG GGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCACATATGG < 41bp 1 0.163366301218404 1 0.166114836931229 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671348 chr2:233671361 synonymous SNV . 0 34 hm5C_associated_SNPs_24857 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 7bp
chr2 233671361 233671361 1 + T A KIRP 233671351 + 233671331 233671371 41 TCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAA TCCCTTTTCTCCAGGTCCAGCTCCCCCTCCACATATGGTAA < 41bp 1 0.11053614073646 1 0.226857453584671 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671351 chr2:233671361 synonymous SNV . 0 31 hm5C_associated_SNPs_24858 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 7bp
chr2 233671361 233671361 1 + T A KIRP 233671354 + 233671334 233671374 41 CTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTA CTTTTCTCCAGGTCCAGCTCCCCCTCCACATATGGTAAGTA < 41bp 1 0.0516814948999747 1 0.0693139731884003 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671354 chr2:233671361 synonymous SNV . 0 28 hm5C_associated_SNPs_24859 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 7bp
chr2 233671361 233671361 1 + T A KIRP 233671355 + 233671335 233671375 41 TTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTAC TTTTCTCCAGGTCCAGCTCCCCCTCCACATATGGTAAGTAC < 41bp 1 0.0459077844229566 1 0.124967694282532 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671355 chr2:233671361 synonymous SNV . 0 27 hm5C_associated_SNPs_24860 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 7bp
chr2 233671361 233671361 1 + T A KIRP 233671356 + 233671336 233671376 41 TTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTACC TTTCTCCAGGTCCAGCTCCCCCTCCACATATGGTAAGTACC < 41bp 1 0.0222488951526777 1 0.169059693813324 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671356 chr2:233671361 synonymous SNV . 0 26 hm5C_associated_SNPs_24861 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 7bp
chr2 233671361 233671361 1 + T A KIRP 233671357 + 233671337 233671377 41 TTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTACCT TTCTCCAGGTCCAGCTCCCCCTCCACATATGGTAAGTACCT < 41bp 1 0.530888348869061 1 0.85325825214386 experiment 0.938223302261878 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671357 chr2:233671361 synonymous SNV . 0 25 hm5C_associated_SNPs_24862 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 7bp
chr9 132623219 132623219 1 + T C KIRP 132623233 + 132623213 132623253 41 CAGGACTCCCCGCCACCCTCCCACCCTCTGAAAGCTGTTCC CAGGACCCCCCGCCACCCTCCCACCCTCTGAAAGCTGTTCC < 41bp 1 0.0232843034182388 1 0.184869199991226 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP20 ENSG00000136878 CDS Human protein_coding chr9:132623233 chr9:132623219 nonsynonymous SNV 0.972 0 7 hm5C_associated_SNPs_24863 0 0 0 0 2 USP20 chr9:132623216 3'AG 132623216 Downstream 4bp
chr9 132623219 132623219 1 + T C KIRP 132623233 + 132623213 132623253 41 CAGGACTCCCCGCCACCCTCCCACCCTCTGAAAGCTGTTCC CAGGACCCCCCGCCACCCTCCCACCCTCTGAAAGCTGTTCC < 41bp 1 0.0232843034182388 1 0.184869199991226 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP20 ENSG00000136878 CDS Human protein_coding chr9:132623233 chr9:132623219 nonsynonymous SNV 0.972 0 7 hm5C_associated_SNPs_24863 0 0 0 0 2 USP20 chr9:132623312 5'GT 132623312 Upstream 94bp
chr10 287963 287963 1 + A G KIRP 287976 + 287956 287996 41 TCCAGATACCTAATCATGAGCTGGTTTGGGCTAAAATGAAA TCCAGATGCCTAATCATGAGCTGGTTTGGGCTAAAATGAAA < 41bp 1 0.496915117126675 1 0.133112162351608 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZMYND11 ENSG00000015171 CDS Human protein_coding chr10:287976 chr10:287963 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_24864 0 0 1 0 1 ZMYND11 chr10:287961 3'AG 287961 Downstream 3bp
chr6 53660212 53660212 1 + A T KIRP 53660192 + 53660172 53660212 41 GAGCTGCTGCTGGACGCCAACCAGCTCCGCGAGCTGCCCGA GAGCTGCTGCTGGACGCCAACCAGCTCCGCGAGCTGCCCGT < 41bp 1 0.483786046599172 1 0.333530843257904 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53660192 chr6:53660212 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_24867 0 0 0 0 1 LRRC1 chr6:53660213 5'GT 53660213 Upstream 2bp
chr13 61034625 61034625 1 + G A KIRP 61034613 + 61034593 61034633 41 CACCAAGGATGCTGCGATTACAGATGACTGATGGTCATATA CACCAAGGATGCTGCGATTACAGATGACTGATAGTCATATA < 41bp 1 0.680820911071112 1 0.582618713378906 experiment 0.638358177857775 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61034613 chr13:61034625 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_24871 0 0 1 0 1 TDRD3 chr13:61034674 5'GT 61034674 Upstream 50bp
chr10 104158555 104158555 1 + G A KIRP 104158544 + 104158524 104158564 41 GAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGTGGCT GAAGGCCTTGCCCACCTTCTCCCAGCCCTTCAGGGGTGGCT < 41bp 1 0.284519589524098 1 0.396022140979767 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104158544 chr10:104158555 nonsynonymous SNV 0.988 4 32 hm5C_associated_SNPs_24872 0 0 1 0 2 NFKB2 chr10:104158496 3'AG 104158496 Downstream 60bp
chr10 104158555 104158555 1 + G A KIRP 104158544 + 104158524 104158564 41 GAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGTGGCT GAAGGCCTTGCCCACCTTCTCCCAGCCCTTCAGGGGTGGCT < 41bp 1 0.284519589524098 1 0.396022140979767 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104158544 chr10:104158555 nonsynonymous SNV 0.988 4 32 hm5C_associated_SNPs_24872 0 0 1 0 2 NFKB2 chr10:104158621 5'GT 104158621 Upstream 67bp
chr7 55459595 55459595 1 + G C KIRP 55459578 + 55459558 55459598 41 AAGACAGCTGATCCCCATGACTGCTCTGCTTATACTGGCTG AAGACAGCTGATCCCCATGACTGCTCTGCTTATACTGCCTG < 41bp 1 0.336375805148305 1 0.0402646958827972 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55459578 chr7:55459595 nonsynonymous SNV 0.996 5 38 hm5C_associated_SNPs_24873 0 0 1 0 1 LANCL2 chr7:55459603 5'GT 55459603 Upstream 9bp
chr12 112229114 112229114 1 + G A KIRP 112229119 + 112229099 112229139 41 TTTGCTCACAGGCTGGCTTTCCCCCTGGTGTGGTCAACATT TTTGCTCACAGGCTGACTTTCCCCCTGGTGTGGTCAACATT < 41bp 1 0.18153246562419 1 0.0423107743263245 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229119 chr12:112229114 nonsynonymous SNV 0.992 4 16 hm5C_associated_SNPs_24874 0 0 1 0 1 ALDH2 chr12:112229110 3'AG 112229110 Downstream 5bp
chr11 64802325 64802325 1 + T G KIRP 64802321 + 64802301 64802341 41 TTGTCCTGGGGGCCGTAGGCCGGTTTGAAGCCTCAGTGATC TTGTCCTGGGGGCCGTAGGCCGGTGTGAAGCCTCAGTGATC < 41bp 1 0.578016299391378 1 0.697668015956879 experiment 0.843967401217245 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802321 chr11:64802325 nonsynonymous SNV 0.917 4 25 hm5C_associated_SNPs_24875 0 0 1 0 1 SNX15 chr11:64802319 3'AG 64802319 Downstream 7bp
chr11 45926284 45926284 1 + C T KIRP 45926276 + 45926256 45926296 41 TTGTCACCTGTAGATTGCCACCACCCGCCGGCTCACCGTGC TTGTCACCTGTAGATTGCCACCACCCGCTGGCTCACCGTGC < 41bp 1 0.0388507299005687 1 0.10144031047821 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926276 chr11:45926284 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_24876 0 0 0 0 1 MAPK8IP1 chr11:45926269 3'AG 45926269 Downstream 16bp
chr11 45926284 45926284 1 + C T KIRP 45926280 + 45926260 45926300 41 CACCTGTAGATTGCCACCACCCGCCGGCTCACCGTGCACTT CACCTGTAGATTGCCACCACCCGCTGGCTCACCGTGCACTT < 41bp 1 0.152464211334514 1 0.023401290178299 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926280 chr11:45926284 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_24877 0 0 0 0 1 MAPK8IP1 chr11:45926269 3'AG 45926269 Downstream 16bp
chr11 45926284 45926284 1 + C T KIRP 45926291 + 45926271 45926311 41 TGCCACCACCCGCCGGCTCACCGTGCACTTTAACCCGCCCT TGCCACCACCCGCTGGCTCACCGTGCACTTTAACCCGCCCT < 41bp 1 0.129670715523448 1 0.529448986053467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926291 chr11:45926284 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_24878 0 0 0 0 1 MAPK8IP1 chr11:45926269 3'AG 45926269 Downstream 16bp
chr12 57922959 57922959 1 + C T KIRP 57922978 + 57922958 57922998 41 CCTCCCCGGGCCCGCCCTGGCCGTCCTGCCAAAAACAAGAG CTTCCCCGGGCCCGCCCTGGCCGTCCTGCCAAAAACAAGAG < 41bp 1 0.068610658030982 1 0.122379571199417 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57922978 chr12:57922959 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_24879 0 0 1 0 1 MBD6 chr12:57922943 3'AG 57922943 Downstream 17bp
chr6 30857025 30857025 1 + G A KIRP 30857005 + 30856985 30857025 41 GAGCAGTGACGGGGATGGGGCCTGGTGCCCCGCAGGGTCGG GAGCAGTGACGGGGATGGGGCCTGGTGCCCCGCAGGGTCGA < 41bp 1 0.278099681720829 1 0.333623290061951 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDR1 ENSG00000204580 CDS Human protein_coding chr6:30857005 chr6:30857025 nonsynonymous SNV 0.968 4 41 hm5C_associated_SNPs_24880 0 0 1 0 1 DDR1 chr6:30856979 3'AG 30856979 Downstream 47bp
chr7 149422542 149422542 1 + G C KIRP 149422538 + 149422518 149422558 41 CCAGCCAGGAGACTCTAGGTCTCAGAAGCCTGAACTGCAAC CCAGCCAGGAGACTCTAGGTCTCACAAGCCTGAACTGCAAC < 41bp 1 0.143542407147195 1 0.049005389213562 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149422538 chr7:149422542 nonsynonymous SNV 0.015 1 25 hm5C_associated_SNPs_24881 0 0 0 0 1 KRBA1 chr7:149422579 5'GT 149422579 Upstream 38bp
chr1 39910503 39910503 1 + G C KIRP 39910486 + 39910466 39910506 41 CAGAAGTGGCATGTGGTCAGCAGTAAGATGGAAGAAAGAAA CAGAAGTGGCATGTGGTCAGCAGTAAGATGGAAGAAACAAA < 41bp 1 0.114808705581961 1 0.415344715118408 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39910486 chr1:39910503 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_24884 0 0 1 0 1 MACF1 chr1:39910507 5'GT 39910507 Upstream 5bp
chr2 45879507 45879507 1 + G C KIRP 45879512 + 45879492 45879532 41 CACGATGCCCCCATAGGCTACGACGACTTCGTGGCCAACTG CACGATGCCCCCATACGCTACGACGACTTCGTGGCCAACTG < 41bp 1 0.258308545277167 1 0.128979802131653 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKCE ENSG00000171132 CDS Human protein_coding chr2:45879512 chr2:45879507 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_24885 0 0 1 0 1 PRKCE chr2:45879587 5'GT 45879587 Upstream 81bp
chr17 4800540 4800540 1 + T G KIRP 4800528 + 4800508 4800548 41 GCCTCAGTCCGCTCTGGGGGCAGCAGCCAAGTTTACTTCAT GCCTCAGTCCGCTCTGGGGGCAGCAGCCAAGTGTACTTCAT < 41bp 1 0.526533964273303 1 0.297524511814117 experiment 0.946932071453393 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4800528 chr17:4800540 synonymous SNV . 0 33 hm5C_associated_SNPs_24886 0 0 1 0 1 MINK1 chr17:4800499 3'AG 4800499 Downstream 42bp
chr17 4800540 4800540 1 + T G KIRP 4800531 + 4800511 4800551 41 TCAGTCCGCTCTGGGGGCAGCAGCCAAGTTTACTTCATGAC TCAGTCCGCTCTGGGGGCAGCAGCCAAGTGTACTTCATGAC < 41bp 1 0.150234892997619 1 0.343157529830933 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4800531 chr17:4800540 synonymous SNV . 0 30 hm5C_associated_SNPs_24887 0 0 1 0 1 MINK1 chr17:4800499 3'AG 4800499 Downstream 42bp
chr7 101837159 101837159 1 + G A KIRP 101837147 + 101837127 101837167 41 TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCACTGGGACA < 41bp 1 0.0186446126197802 1 0.179644852876663 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837147 chr7:101837159 nonsynonymous SNV 0.883 0 33 hm5C_associated_SNPs_24889 0 0 1 0 2 CUX1 chr7:101837122 3'AG 101837122 Downstream 38bp
chr7 101837159 101837159 1 + G A KIRP 101837147 + 101837127 101837167 41 TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCACTGGGACA < 41bp 1 0.0186446126197802 1 0.179644852876663 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837147 chr7:101837159 nonsynonymous SNV 0.883 0 33 hm5C_associated_SNPs_24889 0 0 1 0 2 CUX1 chr7:101837170 5'GT 101837170 Upstream 12bp
chr7 101837159 101837159 1 + G A KIRP 101837148 + 101837128 101837168 41 GAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC GAAGTCCATGGAGTTTGCACCGTCCGAGGGCACTGGGACAC < 41bp 1 0.0799770780849337 1 0.29236513376236 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837148 chr7:101837159 nonsynonymous SNV 0.883 0 32 hm5C_associated_SNPs_24890 0 0 1 0 2 CUX1 chr7:101837122 3'AG 101837122 Downstream 38bp
chr7 101837159 101837159 1 + G A KIRP 101837148 + 101837128 101837168 41 GAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC GAAGTCCATGGAGTTTGCACCGTCCGAGGGCACTGGGACAC < 41bp 1 0.0799770780849337 1 0.29236513376236 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837148 chr7:101837159 nonsynonymous SNV 0.883 0 32 hm5C_associated_SNPs_24890 0 0 1 0 2 CUX1 chr7:101837170 5'GT 101837170 Upstream 12bp
chr17 26943748 26943748 1 - G C KIRP 26943754 - 26943734 26943774 41 TAGGTAAATGTGGTGCCTCTCACCATCCAGCTGACACACCA TAGGTAAATGTGGTGCCTCTCACCATGCAGCTGACACACCA < 41bp 1 0.733045090975114 1 0.848821818828583 experiment 0.533909818049771 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA0100 ENSG00000007202 CDS Human protein_coding chr17:26943754 chr17:26943748 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_24892 0 0 1 0 1 KIAA0100 chr17:26943771 3'AG 26943771 Downstream 24bp
chr17 77077141 77077141 1 + C G KIRP 77077130 + 77077110 77077150 41 AAAGTGGGCAGCTCAAATGGCAAGACGAACTCAACCAGCAC AAAGTGGGCAGCTCAAATGGCAAGACGAACTGAACCAGCAC < 41bp 1 0.674160117192767 1 0.703435242176056 experiment 0.651679765614465 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ENGASE ENSG00000167280 CDS Human protein_coding chr17:77077130 chr17:77077141 synonymous SNV . 0 32 hm5C_associated_SNPs_24893 0 0 1 0 1 ENGASE chr17:77077155 5'GT 77077155 Upstream 15bp
chr17 77077140 77077140 1 + T C KIRP 77077130 + 77077110 77077150 41 AAAGTGGGCAGCTCAAATGGCAAGACGAACTCAACCAGCAC AAAGTGGGCAGCTCAAATGGCAAGACGAACCCAACCAGCAC < 41bp 1 0.716372862586253 1 0.630849242210388 experiment 0.567254274827494 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ENGASE ENSG00000167280 CDS Human protein_coding chr17:77077130 chr17:77077140 nonsynonymous SNV 0.257 3 31 hm5C_associated_SNPs_24894 0 0 1 0 1 ENGASE chr17:77077155 5'GT 77077155 Upstream 16bp
chr1 44058242 44058242 1 + C G KIRP 44058240 + 44058220 44058260 41 TATGGGGGTGGGCGTCTTCACCCCCACCATTGAGGCCCGCA TATGGGGGTGGGCGTCTTCACCGCCACCATTGAGGCCCGCA < 41bp 1 0.192266101092451 1 0.157446771860123 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44058240 chr1:44058242 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_24899 0 0 1 0 1 PTPRF chr1:44058272 5'GT 44058272 Upstream 31bp
chr6 148808752 148808752 1 + C G KIRP 148808768 + 148808748 148808788 41 AGCTCAAGGAATACGAGGCCCAGCACCGGCAGTCGGCTGCC AGCTGAAGGAATACGAGGCCCAGCACCGGCAGTCGGCTGCC < 41bp 1 0.666730348642799 1 0.300736874341965 experiment 0.666539302714402 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SASH1 ENSG00000111961 CDS Human protein_coding chr6:148808768 chr6:148808752 synonymous SNV . 0 5 hm5C_associated_SNPs_24901 0 0 0 0 2 SASH1 chr6:148808750 3'AG 148808750 Downstream 3bp
chr6 148808752 148808752 1 + C G KIRP 148808768 + 148808748 148808788 41 AGCTCAAGGAATACGAGGCCCAGCACCGGCAGTCGGCTGCC AGCTGAAGGAATACGAGGCCCAGCACCGGCAGTCGGCTGCC < 41bp 1 0.666730348642799 1 0.300736874341965 experiment 0.666539302714402 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SASH1 ENSG00000111961 CDS Human protein_coding chr6:148808768 chr6:148808752 synonymous SNV . 0 5 hm5C_associated_SNPs_24901 0 0 0 0 2 SASH1 chr6:148808851 5'GT 148808851 Upstream 100bp
chr19 19603133 19603133 1 + G T KIRP 19603138 + 19603118 19603158 41 CATGAAGTCCGAGAGGAGACCCCCCTCACCTGACGTGATTG CATGAAGTCCGAGAGTAGACCCCCCTCACCTGACGTGATTG < 41bp 1 0.0817209670192623 1 0.0997573137283325 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19603138 chr19:19603133 nonsynonymous SNV 0.931 2 16 hm5C_associated_SNPs_24903 0 0 0 0 1 GATAD2A chr19:19603115 3'AG 19603115 Downstream 19bp
chr2 27440797 27440797 1 + C A KIRP 27440789 + 27440769 27440809 41 ACCCCGAGGCCCTCACCGATCCCTCCTACAAGGCACAGATC ACCCCGAGGCCCTCACCGATCCCTCCTAAAAGGCACAGATC < 41bp 1 0.0446679932201439 1 0.162683725357056 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27440789 chr2:27440797 stopgain 0.998 1 29 hm5C_associated_SNPs_24904 0 0 1 0 1 CAD chr2:27440884 5'GT 27440884 Upstream 88bp
chr16 457438 457438 1 + T G KIRP 457427 + 457407 457447 41 TCTTTACCTGGCTTCTAGGCCGCCAGGAAGCTGGCTGGGGC TCTTTACCTGGCTTCTAGGCCGCCAGGAAGCGGGCTGGGGC < 41bp 1 0.750310794515571 1 0.523253679275513 experiment 0.499378410968859 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DECR2 ENSG00000242612 CDS Human other chr16:457427 chr16:457438 nonsynonymous SNV 0.944 3 32 hm5C_associated_SNPs_24905 0 0 1 0 2 DECR2 chr16:457380 3'AG 457380 Downstream 59bp
chr16 457438 457438 1 + T G KIRP 457427 + 457407 457447 41 TCTTTACCTGGCTTCTAGGCCGCCAGGAAGCTGGCTGGGGC TCTTTACCTGGCTTCTAGGCCGCCAGGAAGCGGGCTGGGGC < 41bp 1 0.750310794515571 1 0.523253679275513 experiment 0.499378410968859 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DECR2 ENSG00000242612 CDS Human protein_coding chr16:457427 chr16:457438 nonsynonymous SNV 0.944 3 32 hm5C_associated_SNPs_24905 0 0 1 0 2 DECR2 chr16:457425 3'AG 457425 Downstream 14bp
chr3 47032943 47032943 1 + G T KIRP 47032958 + 47032938 47032978 41 CTGCTGAGTGTGGTGCGGGGCTGGAGCCGTGGGCCAGCCCC CTGCTTAGTGTGGTGCGGGGCTGGAGCCGTGGGCCAGCCCC < 41bp 1 0.736386796350064 1 0.80940306186676 experiment 0.527226407299872 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032958 chr3:47032943 synonymous SNV . 0 6 hm5C_associated_SNPs_24906 0 0 1 0 1 NBEAL2 chr3:47032896 3'AG 47032896 Downstream 48bp
chr11 7618800 7618800 1 + C G KIRP 7618802 + 7618782 7618822 41 CTGGAACAGGTGAGTGTCCTCACAGACCAAGTAGAAGCCCA CTGGAACAGGTGAGTGTCGTCACAGACCAAGTAGAAGCCCA < 41bp 1 0.592698174559698 1 0.760387718677521 experiment 0.814603650880604 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7618802 chr11:7618800 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_24907 0 0 0 0 1 PPFIBP2 chr11:7618791 3'AG 7618791 Downstream 10bp
chr14 102466716 102466716 1 + G A KIRP 102466707 + 102466687 102466727 41 AAATCGATCAGATGAAGGAGCAACCCTGGGTTTCAGTACAG AAATCGATCAGATGAAGGAGCAACCCTGGATTTCAGTACAG < 41bp 1 0.0429286061353938 1 0.197894483804703 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466707 chr14:102466716 nonsynonymous SNV 0.966 1 30 hm5C_associated_SNPs_24908 0 0 1 0 2 DYNC1H1 chr14:102466623 3'AG 102466623 Downstream 94bp
chr14 102466716 102466716 1 + G A KIRP 102466707 + 102466687 102466727 41 AAATCGATCAGATGAAGGAGCAACCCTGGGTTTCAGTACAG AAATCGATCAGATGAAGGAGCAACCCTGGATTTCAGTACAG < 41bp 1 0.0429286061353938 1 0.197894483804703 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466707 chr14:102466716 nonsynonymous SNV 0.966 1 30 hm5C_associated_SNPs_24908 0 0 1 0 2 DYNC1H1 chr14:102466736 5'GT 102466736 Upstream 21bp
chr20 30723909 30723909 1 + A G KIRP 30723891 + 30723871 30723911 41 CATCAGGCTGTGAAGCTCACCAGCTCTCGAACCCAGCTACC CATCAGGCTGTGAAGCTCACCAGCTCTCGAACCCAGCTGCC < 41bp 1 0.449494261246951 1 0.664496839046478 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30723891 chr20:30723909 synonymous SNV . 0 39 hm5C_associated_SNPs_24910 0 0 1 0 2 TM9SF4 chr20:30723877 3'AG 30723877 Downstream 33bp
chr20 30723909 30723909 1 + A G KIRP 30723891 + 30723871 30723911 41 CATCAGGCTGTGAAGCTCACCAGCTCTCGAACCCAGCTACC CATCAGGCTGTGAAGCTCACCAGCTCTCGAACCCAGCTGCC < 41bp 1 0.449494261246951 1 0.664496839046478 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30723891 chr20:30723909 synonymous SNV . 0 39 hm5C_associated_SNPs_24910 0 0 1 0 2 TM9SF4 chr20:30723976 5'GT 30723976 Upstream 68bp
chr1 198231718 198231718 1 + T G KIRP 198231736 + 198231716 198231756 41 AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG AAGGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG < 41bp 1 0.152516160420287 1 0.0970155894756317 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231736 chr1:198231718 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_24911 0 0 0 0 2 NEK7 chr1:198231705 3'AG 198231705 Downstream 14bp
chr1 198231718 198231718 1 + T G KIRP 198231736 + 198231716 198231756 41 AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG AAGGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG < 41bp 1 0.152516160420287 1 0.0970155894756317 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231736 chr1:198231718 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_24911 0 0 0 0 2 NEK7 chr1:198231767 5'GT 198231767 Upstream 50bp
chr4 57891054 57891054 1 + A G KIRP 57891056 + 57891036 57891076 41 CTTTTTTTTTTAAAAGGTATCGGCTAACAAGGGTGAAATTG CTTTTTTTTTTAAAAGGTGTCGGCTAACAAGGGTGAAATTG < 41bp 1 0.341517471203792 1 0.437217444181442 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57891056 chr4:57891054 synonymous SNV . 0 19 hm5C_associated_SNPs_24912 0 0 1 0 1 POLR2B chr4:57891052 3'AG 57891052 Downstream 3bp
chr11 108206609 108206609 1 + A C KIRP 108206601 + 108206581 108206621 41 GACCTGAGACAAGATGCTGTCATGCAACAGGTCTTCCAGAT GACCTGAGACAAGATGCTGTCATGCAACCGGTCTTCCAGAT < 41bp 1 0.175647673362855 1 0.234654277563095 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108206601 chr11:108206609 nonsynonymous SNV 1.000 5 29 hm5C_associated_SNPs_24915 0 0 1 0 2 ATM chr11:108206572 3'AG 108206572 Downstream 38bp
chr11 108206609 108206609 1 + A C KIRP 108206601 + 108206581 108206621 41 GACCTGAGACAAGATGCTGTCATGCAACAGGTCTTCCAGAT GACCTGAGACAAGATGCTGTCATGCAACCGGTCTTCCAGAT < 41bp 1 0.175647673362855 1 0.234654277563095 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108206601 chr11:108206609 nonsynonymous SNV 1.000 5 29 hm5C_associated_SNPs_24915 0 0 1 0 2 ATM chr11:108206688 5'GT 108206688 Upstream 80bp
chr10 76468112 76468112 1 + T C KIRP 76468126 + 76468106 76468146 41 AGCCTCTGACTGAATGTATCCGTGCTGGCCACTATGCAGCA AGCCTCCGACTGAATGTATCCGTGCTGGCCACTATGCAGCA < 41bp 1 0.421775619041493 1 0.704199910163879 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ADK ENSG00000156110 CDS Human protein_coding chr10:76468126 chr10:76468112 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_24916 0 0 1 0 1 ADK chr10:76468079 3'AG 76468079 Downstream 34bp
chr2 131801882 131801882 1 + G A KIRP 131801875 + 131801855 131801895 41 AGGCCAGCATCTGGCAGGACCTGCTCCGCCGCGACGTGTTG AGGCCAGCATCTGGCAGGACCTGCTCCACCGCGACGTGTTG < 41bp 1 0.15939160989592 1 0.0837984681129456 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF4 ENSG00000136002 CDS Human protein_coding chr2:131801875 chr2:131801882 nonsynonymous SNV 0.988 5 28 hm5C_associated_SNPs_24917 0 0 0 0 1 ARHGEF4 chr2:131801872 3'AG 131801872 Downstream 11bp
chr7 44685022 44685022 1 + G T KIRP 44685003 + 44684983 44685023 41 CAGAGTCCCCTTCCCCTGAGCCGAGGCTCCCTGGCTGCTGT CAGAGTCCCCTTCCCCTGAGCCGAGGCTCCCTGGCTGCTTT < 41bp 1 0.297452241149274 1 0.613104283809662 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44685003 chr7:44685022 nonsynonymous SNV 0.650 0 40 hm5C_associated_SNPs_24918 0 0 1 0 1 OGDH chr7:44685117 5'GT 44685117 Upstream 96bp
chr1 28862497 28862497 1 + G A KIRP 28862499 + 28862479 28862519 41 TTGCCATCTCCCATGAGGGCCACGTGTACGGCTTCGGCCTC TTGCCATCTCCCATGAGGACCACGTGTACGGCTTCGGCCTC < 41bp 1 0.654526601093611 1 0.123857408761978 experiment 0.690946797812778 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28862499 chr1:28862497 nonsynonymous SNV 0.858 5 19 hm5C_associated_SNPs_24919 0 0 1 0 1 RCC1 chr1:28862538 5'GT 28862538 Upstream 42bp
chr20 25198149 25198149 1 + G C KIRP 25198155 + 25198135 25198175 41 CAGGGCACCCTGCAGGCCTCCCCACCCGGCTACCTGACGGC CAGGGCACCCTGCACGCCTCCCCACCCGGCTACCTGACGGC < 41bp 1 0.124491465332952 1 0.0676386058330536 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25198155 chr20:25198149 nonsynonymous SNV 0.072 0 15 hm5C_associated_SNPs_24920 0 0 1 0 2 ENTPD6 chr20:25198138 3'AG 25198138 Downstream 12bp
chr20 25198149 25198149 1 + G C KIRP 25198155 + 25198135 25198175 41 CAGGGCACCCTGCAGGCCTCCCCACCCGGCTACCTGACGGC CAGGGCACCCTGCACGCCTCCCCACCCGGCTACCTGACGGC < 41bp 1 0.124491465332952 1 0.0676386058330536 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25198155 chr20:25198149 nonsynonymous SNV 0.072 0 15 hm5C_associated_SNPs_24920 0 0 1 0 2 ENTPD6 chr20:25198217 5'GT 25198217 Upstream 69bp
chr6 34730469 34730469 1 + T C KIRP 34730453 + 34730433 34730473 41 ATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATTGAC ATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGACTGAC < 41bp 1 0.650417150971383 1 0.838448762893677 experiment 0.699165698057234 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNRPC ENSG00000124562 CDS Human protein_coding chr6:34730453 chr6:34730469 nonsynonymous SNV 1.000 0 37 hm5C_associated_SNPs_24921 0 0 1 0 2 SNRPC chr6:34730372 3'AG 34730372 Downstream 98bp
chr6 34730469 34730469 1 + T C KIRP 34730453 + 34730433 34730473 41 ATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATTGAC ATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGACTGAC < 41bp 1 0.650417150971383 1 0.838448762893677 experiment 0.699165698057234 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNRPC ENSG00000124562 CDS Human protein_coding chr6:34730453 chr6:34730469 nonsynonymous SNV 1.000 0 37 hm5C_associated_SNPs_24921 0 0 1 0 2 SNRPC chr6:34730480 5'GT 34730480 Upstream 12bp
chr7 79842142 79842142 1 + A G KIRP 79842156 + 79842136 79842176 41 AGAAAAAATCAAAAAGAGCCCTCTCACTATATGCTATCCAG AGAAAAGATCAAAAAGAGCCCTCTCACTATATGCTATCCAG < 41bp 1 0.120290350835709 1 0.0629518628120422 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79842156 chr7:79842142 synonymous SNV . 0 7 hm5C_associated_SNPs_24922 0 0 1 0 1 GNAI1 chr7:79842185 5'GT 79842185 Upstream 44bp
chr4 25396298 25396298 1 + A G KIRP 25396309 + 25396289 25396329 41 GTAGTGCTGAACTTCAGACTCTCTTGATGAATCAGTTAACA GTAGTGCTGGACTTCAGACTCTCTTGATGAATCAGTTAACA < 41bp 1 0.25137952257545 1 0.141301870346069 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ANAPC4 ENSG00000053900 CDS Human protein_coding chr4:25396309 chr4:25396298 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_24924 0 0 1 0 2 ANAPC4 chr4:25396293 3'AG 25396293 Downstream 6bp
chr4 25396298 25396298 1 + A G KIRP 25396309 + 25396289 25396329 41 GTAGTGCTGAACTTCAGACTCTCTTGATGAATCAGTTAACA GTAGTGCTGGACTTCAGACTCTCTTGATGAATCAGTTAACA < 41bp 1 0.25137952257545 1 0.141301870346069 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ANAPC4 ENSG00000053900 CDS Human protein_coding chr4:25396309 chr4:25396298 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_24924 0 0 1 0 2 ANAPC4 chr4:25396335 5'GT 25396335 Upstream 38bp
chr1 31897695 31897695 1 + G A KIRP 31897691 + 31897671 31897711 41 ATGCTCTGCGTGAGCAGCAGCCGGGACCCCCGGGCTGCCAT ATGCTCTGCGTGAGCAGCAGCCGGAACCCCCGGGCTGCCAT < 41bp 1 0.777326526851515 1 0.842498779296875 experiment 0.445346946296969 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31897691 chr1:31897695 nonsynonymous SNV 0.962 4 25 hm5C_associated_SNPs_24931 0 0 1 0 1 SERINC2 chr1:31897720 5'GT 31897720 Upstream 26bp
chr20 31374365 31374365 1 + C G KIRP 31374361 + 31374341 31374381 41 CGGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCG CGGGAGAGGCACAGGCCTTCCCCAGGTTCCACCCGAGGCCG < 41bp 1 0.64565192022979 1 0.540468275547028 experiment 0.70869615954042 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374361 chr20:31374365 nonsynonymous SNV 0.117 4 25 hm5C_associated_SNPs_24934 0 0 0 0 1 DNMT3B chr20:31374308 3'AG 31374308 Downstream 58bp
chr20 31374365 31374365 1 + C G KIRP 31374362 + 31374342 31374382 41 GGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCGG GGGAGAGGCACAGGCCTTCCCCAGGTTCCACCCGAGGCCGG < 41bp 1 0.785655056782583 1 0.816054880619049 experiment 0.428689886434833 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374362 chr20:31374365 nonsynonymous SNV 0.117 4 24 hm5C_associated_SNPs_24935 0 0 0 0 1 DNMT3B chr20:31374308 3'AG 31374308 Downstream 58bp
chr10 17276732 17276732 1 + C G KIRP 17276740 + 17276720 17276760 41 GGAACAATGACGCCCTGCGCCAGGCAAAGCAGGAGTCCACT GGAACAATGACGGCCTGCGCCAGGCAAAGCAGGAGTCCACT < 41bp 1 0.50747860041638 1 0.849276065826416 experiment 0.98504279916724 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276740 chr10:17276732 nonsynonymous SNV 0.997 5 13 hm5C_associated_SNPs_24936 0 0 1 0 2 VIM chr10:17276692 3'AG 17276692 Downstream 41bp
chr10 17276732 17276732 1 + C G KIRP 17276740 + 17276720 17276760 41 GGAACAATGACGCCCTGCGCCAGGCAAAGCAGGAGTCCACT GGAACAATGACGGCCTGCGCCAGGCAAAGCAGGAGTCCACT < 41bp 1 0.50747860041638 1 0.849276065826416 experiment 0.98504279916724 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276740 chr10:17276732 nonsynonymous SNV 0.997 5 13 hm5C_associated_SNPs_24936 0 0 1 0 2 VIM chr10:17276817 5'GT 17276817 Upstream 86bp
chr16 4700468 4700468 1 + G T KIRP 4700472 + 4700452 4700492 41 GATCTGAACTTCCTGGGCAGCCGCCCGGTCCAGGTGGGTCT GATCTGAACTTCCTGGTCAGCCGCCCGGTCCAGGTGGGTCT < 41bp 1 0.142783906491315 1 0.0697120130062103 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MGRN1 ENSG00000102858 CDS Human protein_coding chr16:4700472 chr16:4700468 nonsynonymous SNV 0.981 4 17 hm5C_associated_SNPs_24937 0 0 1 0 1 MGRN1 chr16:4700484 5'GT 4700484 Upstream 17bp
chr17 57771125 57771125 1 + T C KIRP 57771132 + 57771112 57771152 41 GCAGGACCCAGTGTTGCCGTCCCTCCCCAGGCACCTTTTGG GCAGGACCCAGTGCTGCCGTCCCTCCCCAGGCACCTTTTGG < 41bp 1 0.0350922076160754 1 0.141295462846756 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57771132 chr17:57771125 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_24938 0 0 1 0 1 CLTC chr17:57771089 3'AG 57771089 Downstream 37bp
chr2 217364692 217364692 1 + T A KIRP 217364687 + 217364667 217364707 41 TATAGACCAAGATGAAGAGACGAGCTGTGGGGATCTGGCAC TATAGACCAAGATGAAGAGACGAGCAGTGGGGATCTGGCAC < 41bp 1 0.626563007154302 1 0.198438376188278 experiment 0.746873985691396 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364687 chr2:217364692 synonymous SNV . 0 26 hm5C_associated_SNPs_24939 0 0 1 0 2 RPL37A chr2:217364672 3'AG 217364672 Downstream 21bp
chr2 217364692 217364692 1 + T A KIRP 217364687 + 217364667 217364707 41 TATAGACCAAGATGAAGAGACGAGCTGTGGGGATCTGGCAC TATAGACCAAGATGAAGAGACGAGCAGTGGGGATCTGGCAC < 41bp 1 0.626563007154302 1 0.198438376188278 experiment 0.746873985691396 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364687 chr2:217364692 synonymous SNV . 0 26 hm5C_associated_SNPs_24939 0 0 1 0 2 RPL37A chr2:217364754 5'GT 217364754 Upstream 63bp
chr2 217364692 217364692 1 + T A KIRP 217364705 + 217364685 217364725 41 GACGAGCTGTGGGGATCTGGCACTGTGGTTCCTGCATGAAG GACGAGCAGTGGGGATCTGGCACTGTGGTTCCTGCATGAAG < 41bp 1 0.691548758241717 1 0.145068049430847 experiment 0.616902483516566 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364705 chr2:217364692 synonymous SNV . 0 8 hm5C_associated_SNPs_24940 0 0 1 0 2 RPL37A chr2:217364672 3'AG 217364672 Downstream 21bp
chr2 217364692 217364692 1 + T A KIRP 217364705 + 217364685 217364725 41 GACGAGCTGTGGGGATCTGGCACTGTGGTTCCTGCATGAAG GACGAGCAGTGGGGATCTGGCACTGTGGTTCCTGCATGAAG < 41bp 1 0.691548758241717 1 0.145068049430847 experiment 0.616902483516566 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364705 chr2:217364692 synonymous SNV . 0 8 hm5C_associated_SNPs_24940 0 0 1 0 2 RPL37A chr2:217364754 5'GT 217364754 Upstream 63bp
chr19 59057198 59057198 1 + G A KIRP 59057191 + 59057171 59057211 41 ACTGTGTGGAGTGCTCGGAGCCTCTGTGTGAGACCTGTGTA ACTGTGTGGAGTGCTCGGAGCCTCTGTATGAGACCTGTGTA < 41bp 1 0.0873415436802791 1 0.0536020696163177 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59057191 chr19:59057198 nonsynonymous SNV 0.996 5 28 hm5C_associated_SNPs_24941 0 0 1 0 2 TRIM28 chr19:59057131 3'AG 59057131 Downstream 68bp
chr19 59057198 59057198 1 + G A KIRP 59057191 + 59057171 59057211 41 ACTGTGTGGAGTGCTCGGAGCCTCTGTGTGAGACCTGTGTA ACTGTGTGGAGTGCTCGGAGCCTCTGTATGAGACCTGTGTA < 41bp 1 0.0873415436802791 1 0.0536020696163177 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59057191 chr19:59057198 nonsynonymous SNV 0.996 5 28 hm5C_associated_SNPs_24941 0 0 1 0 2 TRIM28 chr19:59057263 5'GT 59057263 Upstream 66bp
chr19 59057198 59057198 1 + G A KIRP 59057205 + 59057185 59057225 41 TCGGAGCCTCTGTGTGAGACCTGTGTAGAGGCGCACCAGCG TCGGAGCCTCTGTATGAGACCTGTGTAGAGGCGCACCAGCG < 41bp 1 0.353517700341776 1 0.0884530544281006 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59057205 chr19:59057198 nonsynonymous SNV 0.996 5 14 hm5C_associated_SNPs_24942 0 0 1 0 2 TRIM28 chr19:59057131 3'AG 59057131 Downstream 68bp
chr19 59057198 59057198 1 + G A KIRP 59057205 + 59057185 59057225 41 TCGGAGCCTCTGTGTGAGACCTGTGTAGAGGCGCACCAGCG TCGGAGCCTCTGTATGAGACCTGTGTAGAGGCGCACCAGCG < 41bp 1 0.353517700341776 1 0.0884530544281006 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59057205 chr19:59057198 nonsynonymous SNV 0.996 5 14 hm5C_associated_SNPs_24942 0 0 1 0 2 TRIM28 chr19:59057263 5'GT 59057263 Upstream 66bp
chr4 79512751 79512751 1 + C T KIRP 79512760 + 79512740 79512780 41 CTGGTGACTTCCGGAAAGCTCTGTTGACTTTGGCAGATGTA CTGGTGACTTCTGGAAAGCTCTGTTGACTTTGGCAGATGTA < 41bp 1 0.218457486674487 1 0.11099910736084 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79512760 chr4:79512751 nonsynonymous SNV 0.999 3 12 hm5C_associated_SNPs_24943 0 0 0 0 2 ANXA3 chr4:79512698 3'AG 79512698 Downstream 54bp
chr4 79512751 79512751 1 + C T KIRP 79512760 + 79512740 79512780 41 CTGGTGACTTCCGGAAAGCTCTGTTGACTTTGGCAGATGTA CTGGTGACTTCTGGAAAGCTCTGTTGACTTTGGCAGATGTA < 41bp 1 0.218457486674487 1 0.11099910736084 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79512760 chr4:79512751 nonsynonymous SNV 0.999 3 12 hm5C_associated_SNPs_24943 0 0 0 0 2 ANXA3 chr4:79512777 5'GT 79512777 Upstream 27bp
chr22 38461040 38461040 1 + G A KIRP 38461023 + 38461003 38461043 41 CCACAGGTATTTGACAACACCCCAGCAGCCTTGGACGGCAC CCACAGGTATTTGACAACACCCCAGCAGCCTTGGACGACAC < 41bp 1 0.288615659806304 1 0.0690192878246307 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PICK1 ENSG00000100151 CDS Human protein_coding chr22:38461023 chr22:38461040 nonsynonymous SNV 0.999 2 38 hm5C_associated_SNPs_24945 0 0 1 0 2 PICK1 chr22:38461009 3'AG 38461009 Downstream 32bp
chr22 38461040 38461040 1 + G A KIRP 38461023 + 38461003 38461043 41 CCACAGGTATTTGACAACACCCCAGCAGCCTTGGACGGCAC CCACAGGTATTTGACAACACCCCAGCAGCCTTGGACGACAC < 41bp 1 0.288615659806304 1 0.0690192878246307 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PICK1 ENSG00000100151 CDS Human protein_coding chr22:38461023 chr22:38461040 nonsynonymous SNV 0.999 2 38 hm5C_associated_SNPs_24945 0 0 1 0 2 PICK1 chr22:38461137 5'GT 38461137 Upstream 98bp
chr7 128407599 128407599 1 + C A KIRP 128407598 + 128407578 128407618 41 GTTGAGTTTCGGGATAAGAACCGTGATGGGAAGATGGACAA GTTGAGTTTCGGGATAAGAACAGTGATGGGAAGATGGACAA < 41bp 1 0.742671376448144 1 0.293393194675446 experiment 0.514657247103713 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALU ENSG00000128595 CDS Human protein_coding chr7:128407598 chr7:128407599 nonsynonymous SNV 0.996 0 22 hm5C_associated_SNPs_24946 0 0 1 0 1 CALU chr7:128407510 3'AG 128407510 Downstream 90bp
chr19 36128157 36128157 1 + G A KIRP 36128142 + 36128122 36128162 41 GCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCCAAGGTGAT GCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCCAAAGTGAT < 41bp 1 0.172027483035868 1 0.605333209037781 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36128142 chr19:36128157 synonymous SNV . 0 36 hm5C_associated_SNPs_24948 0 0 1 0 2 RBM42 chr19:36128060 3'AG 36128060 Downstream 98bp
chr19 36128157 36128157 1 + G A KIRP 36128142 + 36128122 36128162 41 GCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCCAAGGTGAT GCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCCAAAGTGAT < 41bp 1 0.172027483035868 1 0.605333209037781 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36128142 chr19:36128157 synonymous SNV . 0 36 hm5C_associated_SNPs_24948 0 0 1 0 2 RBM42 chr19:36128254 5'GT 36128254 Upstream 98bp
chr15 79185887 79185887 1 + T C KIRP 79185883 + 79185863 79185903 41 ATATTTTTGTCTTCATAGCTCTTTTATCTTCCTGCCAAGAA ATATTTTTGTCTTCATAGCTCTTTCATCTTCCTGCCAAGAA < 41bp 1 0.0325058772089042 1 0.052255243062973 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79185883 chr15:79185887 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_24949 0 0 1 0 2 MORF4L1 chr15:79185881 3'AG 79185881 Downstream 7bp
chr15 79185887 79185887 1 + T C KIRP 79185883 + 79185863 79185903 41 ATATTTTTGTCTTCATAGCTCTTTTATCTTCCTGCCAAGAA ATATTTTTGTCTTCATAGCTCTTTCATCTTCCTGCCAAGAA < 41bp 1 0.0325058772089042 1 0.052255243062973 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79185883 chr15:79185887 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_24949 0 0 1 0 2 MORF4L1 chr15:79185969 5'GT 79185969 Upstream 83bp
chr11 65829382 65829382 1 + C A KIRP 65829381 + 65829361 65829401 41 GAATGCCCACAAGGTCCCTCCCCCATGGCTGATTGCCATGC GAATGCCCACAAGGTCCCTCCACCATGGCTGATTGCCATGC < 41bp 1 0.762213546314679 1 0.306530296802521 experiment 0.475572907370641 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65829381 chr11:65829382 synonymous SNV . 0 22 hm5C_associated_SNPs_24950 0 0 1 0 2 SF3B2 chr11:65829362 3'AG 65829362 Downstream 21bp
chr11 65829382 65829382 1 + C A KIRP 65829381 + 65829361 65829401 41 GAATGCCCACAAGGTCCCTCCCCCATGGCTGATTGCCATGC GAATGCCCACAAGGTCCCTCCACCATGGCTGATTGCCATGC < 41bp 1 0.762213546314679 1 0.306530296802521 experiment 0.475572907370641 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65829381 chr11:65829382 synonymous SNV . 0 22 hm5C_associated_SNPs_24950 0 0 1 0 2 SF3B2 chr11:65829469 5'GT 65829469 Upstream 88bp
chr10 31812949 31812949 1 + G T KIRP 31812931 + 31812911 31812951 41 GAATGACTCTGATTCTACACCGCCCAAAAAGAAAATGCGGA GAATGACTCTGATTCTACACCGCCCAAAAAGAAAATGCTGA < 41bp 1 0.248385163389494 1 0.197263538837433 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZEB1 ENSG00000148516 CDS Human protein_coding chr10:31812931 chr10:31812949 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_24952 0 0 1 0 1 ZEB1 chr10:31812861 3'AG 31812861 Downstream 89bp
chr3 50257565 50257565 1 + A G KIRP 50257570 + 50257550 50257590 41 TTGAGCTTCATCATCATTGACTGGGCCTCAGGGACCAGCCG TTGAGCTTCATCATCGTTGACTGGGCCTCAGGGACCAGCCG < 41bp 1 0.609414838266627 1 0.263521134853363 experiment 0.781170323466745 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50257570 chr3:50257565 . 1.000 0 16 hm5C_associated_SNPs_24955 0 0 1 0 1 SLC38A3 chr3:50257505 3'AG 50257505 Downstream 61bp
chr22 30413918 30413918 1 + G T KIRP 30413919 + 30413899 30413939 41 TCCTCCCCCCTCCTCAGGTGCTGTACCCTGTGTGCCATGTG TCCTCCCCCCTCCTCAGGTTCTGTACCCTGTGTGCCATGTG < 41bp 1 0.217686646096059 1 0.118562817573547 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTMR3 ENSG00000100330 CDS Human protein_coding chr22:30413919 chr22:30413918 synonymous SNV . 0 20 hm5C_associated_SNPs_24956 0 0 1 0 1 MTMR3 chr22:30413916 3'AG 30413916 Downstream 3bp
chr16 19548870 19548870 1 + T A KIRP 19548865 + 19548845 19548885 41 AAAAAGATACCCTAAGGGATCTGGCTTCGTTAACAAGAATA AAAAAGATACCCTAAGGGATCTGGCATCGTTAACAAGAATA < 41bp 1 0.382011229305086 1 0.131814986467361 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCP110 ENSG00000103540 CDS Human protein_coding chr16:19548865 chr16:19548870 nonsynonymous SNV 0.958 0 26 hm5C_associated_SNPs_24957 0 0 1 0 1 CCP110 chr16:19548909 5'GT 19548909 Upstream 40bp
chr7 150769158 150769158 1 + C A KIRP 150769166 + 150769146 150769186 41 TCCCGCTTCACCCAGGAGATCTTCGCCTTCTTGATCTCACT TCCCGCTTCACCAAGGAGATCTTCGCCTTCTTGATCTCACT < 41bp 1 0.0567112412170182 1 0.0287495851516724 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150769166 chr7:150769158 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_24958 0 0 1 0 1 SLC4A2 chr7:150769223 5'GT 150769223 Upstream 66bp
chr7 45112359 45112359 1 + C T KIRP 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACTTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.307863478745071 1 0.051062136888504 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112359 synonymous SNV . 0 3 hm5C_associated_SNPs_24959 0 0 1 7 2 CCM2 chr7:45112325 3'AG 45112325 Downstream 35bp
chr7 45112359 45112359 1 + C T KIRP 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACTTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.307863478745071 1 0.051062136888504 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112359 synonymous SNV . 0 3 hm5C_associated_SNPs_24959 0 0 1 7 2 CCM2 chr7:45112382 5'GT 45112382 Upstream 24bp
chr8 99019720 99019720 1 + C T KIRP 99019717 + 99019697 99019737 41 GGTTTTGCAGGGGTGGATTACTGCCTGCTGAGTGACCATGG GGTTTTGCAGGGGTGGATTACTGTCTGCTGAGTGACCATGG < 41bp 1 0.34550993086883 1 0.142290115356445 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MATN2 ENSG00000132561 CDS Human protein_coding chr8:99019717 chr8:99019720 synonymous SNV . 0 24 hm5C_associated_SNPs_24960 0 0 0 0 1 MATN2 chr8:99019707 3'AG 99019707 Downstream 14bp
chr11 9451343 9451343 1 + G A KIRP 9451359 + 9451339 9451379 41 TGAAGAAGTTACTCCTATTGCAGTAGAAATGACACAACATT TGAAAAAGTTACTCCTATTGCAGTAGAAATGACACAACATT < 41bp 1 0.532627788177613 1 0.555414199829102 experiment 0.934744423644775 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9451359 chr11:9451343 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_24961 0 0 1 0 1 IPO7 chr11:9451381 5'GT 9451381 Upstream 39bp
chr21 47978259 47978259 1 + G A KIRP 47978252 + 47978232 47978272 41 AAGGACCTGGGCCTGCCGGCCCGCGCCGTAAGCACCACGTT AAGGACCTGGGCCTGCCGGCCCGCGCCATAAGCACCACGTT < 41bp 1 0.290337026864449 1 0.607302486896515 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47978252 chr21:47978259 nonsynonymous SNV 0.506 3 28 hm5C_associated_SNPs_24963 0 0 1 0 1 DIP2A chr21:47978306 5'GT 47978306 Upstream 48bp
chr10 135209677 135209677 1 + C T KIRP 135209670 + 135209650 135209690 41 TACCTTAATTTTGCCACATCCCACTTTCAGGCCGCAACCCT TACCTTAATTTTGCCACATCCCACTTTTAGGCCGCAACCCT < 41bp 1 0.0800027056028172 1 0.117035150527954 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTG1 ENSG00000148824;ENSG00000254536 CDS Human other chr10:135209670 chr10:135209677 nonsynonymous SNV 0.998 1 28 hm5C_associated_SNPs_24964 0 0 1 0 1 MTG1 chr10:135209771 5'GT 135209771 Upstream 95bp
chr12 112227694 112227694 1 + T C KIRP 112227678 + 112227658 112227698 41 GGGAAAACCATCCCCATTGACGGAGACTTCTTCAGCTACAC GGGAAAACCATCCCCATTGACGGAGACTTCTTCAGCCACAC < 41bp 1 0.77142136052747 1 0.847799062728882 experiment 0.45715727894506 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112227678 chr12:112227694 nonsynonymous SNV 0.999 4 37 hm5C_associated_SNPs_24965 0 0 1 0 2 ALDH2 chr12:112227627 3'AG 112227627 Downstream 68bp
chr12 112227694 112227694 1 + T C KIRP 112227678 + 112227658 112227698 41 GGGAAAACCATCCCCATTGACGGAGACTTCTTCAGCTACAC GGGAAAACCATCCCCATTGACGGAGACTTCTTCAGCCACAC < 41bp 1 0.77142136052747 1 0.847799062728882 experiment 0.45715727894506 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112227678 chr12:112227694 nonsynonymous SNV 0.999 4 37 hm5C_associated_SNPs_24965 0 0 1 0 2 ALDH2 chr12:112227738 5'GT 112227738 Upstream 45bp
chr19 1255053 1255053 1 + C T LGG 1255058 + 1255038 1255078 41 GGTCTTCTCAGGGACCTTCTCTGGTAGGTGTCACAGCACAT GGTCTTCTCAGGGACTTTCTCTGGTAGGTGTCACAGCACAT < 41bp 1 0.698332876813565 1 0.507118999958038 experiment 0.603334246372869 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MIDN ENSG00000167470 CDS Human protein_coding chr19:1255058 chr19:1255053 synonymous SNV . 0 16 hm5C_associated_SNPs_24966 0 0 1 0 1 MIDN chr19:1255060 5'GT 1255060 Upstream 8bp
chr15 99673028 99673028 1 + G T LGG 99673023 + 99673003 99673043 41 GGAGCTCTCGGTGTGTCTGACCGTGGTTCCTGGAGAGACGC GGAGCTCTCGGTGTGTCTGACCGTGTTTCCTGGAGAGACGC < 41bp 1 0.212080859634698 1 0.056707352399826 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99673023 chr15:99673028 nonsynonymous SNV 0.269 3 26 hm5C_associated_SNPs_24967 0 0 1 0 1 SYNM chr15:99672955 3'AG 99672955 Downstream 74bp
chr5 53815358 53815358 1 + C G LGG 53815367 + 53815347 53815387 41 TAGCGCTGTATCAGGGGCATCTGGCTAACTTCCCGGACATC TAGCGCTGTATGAGGGGCATCTGGCTAACTTCCCGGACATC < 41bp 1 0.393801648362055 1 0.46127861738205 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SNX18 ENSG00000178996 CDS Human protein_coding chr5:53815367 chr5:53815358 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_24968 0 0 1 0 1 SNX18 chr5:53815403 5'GT 53815403 Upstream 46bp
chr14 104638942 104638942 1 + G A LGG 104638925 + 104638905 104638945 41 CCCCTAGGCCGAAGTCTGCTCGGGGACCGTGGCCGACGTGC CCCCTAGGCCGAAGTCTGCTCGGGGACCGTGGCCGACATGC < 41bp 1 0.737305770336435 1 0.92746114730835 experiment 0.525388459327129 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104638925 chr14:104638942 nonsynonymous SNV 0.895 3 38 hm5C_associated_SNPs_24969 0 0 1 0 2 KIF26A chr14:104638912 3'AG 104638912 Downstream 31bp
chr14 104638942 104638942 1 + G A LGG 104638925 + 104638905 104638945 41 CCCCTAGGCCGAAGTCTGCTCGGGGACCGTGGCCGACGTGC CCCCTAGGCCGAAGTCTGCTCGGGGACCGTGGCCGACATGC < 41bp 1 0.737305770336435 1 0.92746114730835 experiment 0.525388459327129 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104638925 chr14:104638942 nonsynonymous SNV 0.895 3 38 hm5C_associated_SNPs_24969 0 0 1 0 2 KIF26A chr14:104639005 5'GT 104639005 Upstream 64bp
chr3 160122126 160122126 1 + A C LGG 160122141 + 160122121 160122161 41 GGATGATTATGAAGTCATTCCTAACAGTAATTTCTATGTAT GGATGCTTATGAAGTCATTCCTAACAGTAATTTCTATGTAT < 41bp 1 0.111057899554337 1 0.0577127039432526 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160122141 chr3:160122126 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_24972 0 0 1 2 1 SMC4 chr3:160122116 3'AG 160122116 Downstream 11bp
chr16 53348818 53348818 1 + T A LGG 53348814 + 53348794 53348834 41 TACTCAACCTCAAGGAATTCCTGATACAGAAAGTCCAGTTC TACTCAACCTCAAGGAATTCCTGAAACAGAAAGTCCAGTTC < 41bp 1 0.480448835501821 1 0.17633268237114 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHD9 ENSG00000177200 CDS Human protein_coding chr16:53348814 chr16:53348818 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_24975 0 0 0 0 1 CHD9 chr16:53348735 3'AG 53348735 Downstream 84bp
chr16 53348818 53348818 1 + T A LGG 53348820 + 53348800 53348840 41 ACCTCAAGGAATTCCTGATACAGAAAGTCCAGTTCCAGTTA ACCTCAAGGAATTCCTGAAACAGAAAGTCCAGTTCCAGTTA < 41bp 1 0.636612817893698 1 0.447980761528015 experiment 0.726774364212604 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHD9 ENSG00000177200 CDS Human protein_coding chr16:53348820 chr16:53348818 nonsynonymous SNV 0.997 4 19 hm5C_associated_SNPs_24976 0 0 0 0 1 CHD9 chr16:53348735 3'AG 53348735 Downstream 84bp
chr19 50031744 50031744 1 + A G LGG 50031728 + 50031708 50031748 41 CTTTGCCACTCCCCAGGGACCGATGATGTGGCGACCATCAG CTTTGCCACTCCCCAGGGACCGATGATGTGGCGACCGTCAG < 41bp 1 0.567507040796658 1 0.34754005074501 experiment 0.864985918406684 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RCN3 ENSG00000142552 CDS Human protein_coding chr19:50031728 chr19:50031744 synonymous SNV . 0 37 hm5C_associated_SNPs_24977 0 0 1 0 1 RCN3 chr19:50031724 3'AG 50031724 Downstream 21bp
chr4 6596402 6596402 1 + G A LGG 6596403 + 6596383 6596423 41 CTACTTCCGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG CTACTTCCGTGCCCTGCACACTCTCAATGTCACCTGGCGTG < 41bp 1 0.186925884759404 1 0.0494726002216339 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6596403 chr4:6596402 nonsynonymous SNV 0.019 0 20 hm5C_associated_SNPs_24979 0 0 0 0 2 MAN2B2 chr4:6596348 3'AG 6596348 Downstream 55bp
chr4 6596402 6596402 1 + G A LGG 6596403 + 6596383 6596423 41 CTACTTCCGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG CTACTTCCGTGCCCTGCACACTCTCAATGTCACCTGGCGTG < 41bp 1 0.186925884759404 1 0.0494726002216339 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6596403 chr4:6596402 nonsynonymous SNV 0.019 0 20 hm5C_associated_SNPs_24979 0 0 0 0 2 MAN2B2 chr4:6596459 5'GT 6596459 Upstream 58bp
chr16 67575592 67575592 1 + T G LGG 67575598 + 67575578 67575618 41 CCCTCAGCTGCTTCTTCTGTCAACAAGGCCTCCACAGTCAC CCCTCAGCTGCTTCGTCTGTCAACAAGGCCTCCACAGTCAC < 41bp 1 0.648236910587585 1 0.745540678501129 experiment 0.703526178824829 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67575598 chr16:67575592 synonymous SNV . 0 15 hm5C_associated_SNPs_24980 0 0 1 0 2 RIPOR1 chr16:67575556 3'AG 67575556 Downstream 37bp
chr16 67575592 67575592 1 + T G LGG 67575598 + 67575578 67575618 41 CCCTCAGCTGCTTCTTCTGTCAACAAGGCCTCCACAGTCAC CCCTCAGCTGCTTCGTCTGTCAACAAGGCCTCCACAGTCAC < 41bp 1 0.648236910587585 1 0.745540678501129 experiment 0.703526178824829 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67575598 chr16:67575592 synonymous SNV . 0 15 hm5C_associated_SNPs_24980 0 0 1 0 2 RIPOR1 chr16:67575685 5'GT 67575685 Upstream 94bp
chr19 14568915 14568915 1 + A T LGG 14568926 + 14568906 14568946 41 GTGGCCCCAATGCCTGGGACCAGAGCTTCACTCTGGAGCTG GTGGCCCCATTGCCTGGGACCAGAGCTTCACTCTGGAGCTG < 41bp 1 0.539360018923535 1 0.606367886066437 experiment 0.92127996215293 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14568926 chr19:14568915 nonsynonymous SNV 0.391 1 10 hm5C_associated_SNPs_24981 0 0 1 0 1 PKN1 chr19:14568843 3'AG 14568843 Downstream 73bp
chr3 196533532 196533532 1 + C T LGG 196533533 + 196533513 196533553 41 ACTGCTCCTCCCGTTATTGCCCCGCGACCGGATCATACGAA ACTGCTCCTCCCGTTATTGTCCCGCGACCGGATCATACGAA < 41bp 1 0.549846415241325 1 0.739472508430481 experiment 0.900307169517349 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAK2 ENSG00000180370 CDS Human protein_coding chr3:196533533 chr3:196533532 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_24984 0 0 1 0 2 PAK2 chr3:196533450 3'AG 196533450 Downstream 83bp
chr3 196533532 196533532 1 + C T LGG 196533533 + 196533513 196533553 41 ACTGCTCCTCCCGTTATTGCCCCGCGACCGGATCATACGAA ACTGCTCCTCCCGTTATTGTCCCGCGACCGGATCATACGAA < 41bp 1 0.549846415241325 1 0.739472508430481 experiment 0.900307169517349 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAK2 ENSG00000180370 CDS Human protein_coding chr3:196533533 chr3:196533532 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_24984 0 0 1 0 2 PAK2 chr3:196533557 5'GT 196533557 Upstream 26bp
chr17 37676268 37676268 1 + G A LGG 37676272 + 37676252 37676292 41 CTAGATCCTAGTAAGCGGTGCACAGCTGAACAGACCCTACA CTAGATCCTAGTAAGCAGTGCACAGCTGAACAGACCCTACA < 41bp 1 0.209270566648212 1 0.0847953259944916 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37676272 chr17:37676268 nonsynonymous SNV 0.987 3 17 hm5C_associated_SNPs_24987 0 0 1 0 1 CDK12 chr17:37676209 3'AG 37676209 Downstream 60bp
chr9 37500851 37500851 1 + G A LGG 37500857 + 37500837 37500877 41 GTGCTCTGGGACCTGGAGTTCCCCACATCATCAACACCAAA GTGCTCTGGGACCTAGAGTTCCCCACATCATCAACACCAAA < 41bp 1 0.4306258961763 1 0.120303630828857 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR1E ENSG00000137054 CDS Human protein_coding chr9:37500857 chr9:37500851 nonsynonymous SNV 0.482 3 15 hm5C_associated_SNPs_24988 0 0 1 0 2 POLR1E chr9:37500837 3'AG 37500837 Downstream 15bp
chr9 37500851 37500851 1 + G A LGG 37500857 + 37500837 37500877 41 GTGCTCTGGGACCTGGAGTTCCCCACATCATCAACACCAAA GTGCTCTGGGACCTAGAGTTCCCCACATCATCAACACCAAA < 41bp 1 0.4306258961763 1 0.120303630828857 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR1E ENSG00000137054 CDS Human protein_coding chr9:37500857 chr9:37500851 nonsynonymous SNV 0.482 3 15 hm5C_associated_SNPs_24988 0 0 1 0 2 POLR1E chr9:37500918 5'GT 37500918 Upstream 68bp
chr6 7579935 7579935 1 + T C LGG 7579952 + 7579932 7579972 41 AGATTGAAAGGTTGAGGGTTCTACTGCAGGAAGAAGGCACC AGACTGAAAGGTTGAGGGTTCTACTGCAGGAAGAAGGCACC < 41bp 1 0.209285021444391 1 0.330380469560623 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7579952 chr6:7579935 nonsynonymous SNV 0.999 5 4 hm5C_associated_SNPs_24989 2 0 1 0 1 DSP chr6:7580005 5'GT 7580005 Upstream 71bp
chr19 33581715 33581715 1 + C T LGG 33581723 + 33581703 33581743 41 TTTGTGTCTTCACGACAGAACAGAGCAGACAAATCTGTTCT TTTGTGTCTTCATGACAGAACAGAGCAGACAAATCTGTTCT < 41bp 1 0.389690376170015 1 0.217188537120819 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33581723 chr19:33581715 stopgain 0.998 1 13 hm5C_associated_SNPs_24990 0 0 1 0 2 GPATCH1 chr19:33581686 3'AG 33581686 Downstream 30bp
chr19 33581715 33581715 1 + C T LGG 33581723 + 33581703 33581743 41 TTTGTGTCTTCACGACAGAACAGAGCAGACAAATCTGTTCT TTTGTGTCTTCATGACAGAACAGAGCAGACAAATCTGTTCT < 41bp 1 0.389690376170015 1 0.217188537120819 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33581723 chr19:33581715 stopgain 0.998 1 13 hm5C_associated_SNPs_24990 0 0 1 0 2 GPATCH1 chr19:33581771 5'GT 33581771 Upstream 57bp
chr12 57575037 57575037 1 + C T LGG 57575017 + 57574997 57575037 41 TGCCCACGTCAGAGACGACCCGCTCCTGCATGTGCACAGCC TGCCCACGTCAGAGACGACCCGCTCCTGCATGTGCACAGCT < 41bp 1 0.0834561640722306 1 0.0741469264030457 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57575017 chr12:57575037 synonymous SNV . 0 41 hm5C_associated_SNPs_24991 0 0 0 0 1 LRP1 chr12:57574940 3'AG 57574940 Downstream 98bp
chr12 73012760 73012760 1 + G A LGG 73012771 + 73012751 73012791 41 CTGCCAGCCGAGCTCTTTATCCTCTAGATAAATTACTGGAC CTGCCAGCCAAGCTCTTTATCCTCTAGATAAATTACTGGAC < 41bp 1 0.0854542683106672 1 0.11640727519989 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRHDE ENSG00000072657 CDS Human protein_coding chr12:73012771 chr12:73012760 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_24992 0 0 0 0 2 TRHDE chr12:73012671 3'AG 73012671 Downstream 90bp
chr12 73012760 73012760 1 + G A LGG 73012771 + 73012751 73012791 41 CTGCCAGCCGAGCTCTTTATCCTCTAGATAAATTACTGGAC CTGCCAGCCAAGCTCTTTATCCTCTAGATAAATTACTGGAC < 41bp 1 0.0854542683106672 1 0.11640727519989 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRHDE ENSG00000072657 CDS Human protein_coding chr12:73012771 chr12:73012760 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_24992 0 0 0 0 2 TRHDE chr12:73012818 5'GT 73012818 Upstream 59bp
chr8 68074125 68074125 1 + A G LGG 68074141 + 68074121 68074161 41 GTTGACAGCATCATACGTTCCTTTATTCATGTATGTACTTT GTTGGCAGCATCATACGTTCCTTTATTCATGTATGTACTTT < 41bp 1 0.236750737745372 1 0.0269953310489655 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68074141 chr8:68074125 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_24993 0 0 1 0 2 CSPP1 chr8:68074046 3'AG 68074046 Downstream 80bp
chr8 68074125 68074125 1 + A G LGG 68074141 + 68074121 68074161 41 GTTGACAGCATCATACGTTCCTTTATTCATGTATGTACTTT GTTGGCAGCATCATACGTTCCTTTATTCATGTATGTACTTT < 41bp 1 0.236750737745372 1 0.0269953310489655 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68074141 chr8:68074125 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_24993 0 0 1 0 2 CSPP1 chr8:68074150 5'GT 68074150 Upstream 26bp
chr1 156876623 156876623 1 + G A LGG 156876640 + 156876620 156876660 41 TGCGATCCCCAGACTGGAGCCTGCTTCTGCCCCGCAGAGAG TGCAATCCCCAGACTGGAGCCTGCTTCTGCCCCGCAGAGAG < 41bp 1 0.313897644362045 1 0.189368307590485 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156876640 chr1:156876623 nonsynonymous SNV 0.841 0 4 hm5C_associated_SNPs_24994 0 0 0 0 1 PEAR1 chr1:156876672 5'GT 156876672 Upstream 50bp
chr12 111885211 111885211 1 + G A LGG 111885210 + 111885190 111885230 41 TCCTGCTACCCCTGGTTCCACGGCCCCATCTCCAGAGTGAA TCCTGCTACCCCTGGTTCCACAGCCCCATCTCCAGAGTGAA < 41bp 1 0.235845126983899 1 0.337783813476562 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SH2B3 ENSG00000111252 CDS Human protein_coding chr12:111885210 chr12:111885211 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_24996 0 0 0 0 1 SH2B3 chr12:111885134 3'AG 111885134 Downstream 78bp
chr19 11141525 11141525 1 + G C LGG 11141506 + 11141486 11141526 41 AGCACCCGGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGGC AGCACCCGGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGCC < 41bp 1 0.467146378254489 1 0.708521723747253 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141506 chr19:11141525 nonsynonymous SNV 0.422 4 40 hm5C_associated_SNPs_24997 0 0 1 0 1 SMARCA4 chr19:11141569 5'GT 11141569 Upstream 45bp
chr1 162557442 162557442 1 + C T LGG 162557436 + 162557416 162557456 41 CCAACCATTTCTTCACTGTACCATTTCTGAGAGATGTTGTC CCAACCATTTCTTCACTGTACCATTTTTGAGAGATGTTGTC < 41bp 1 0.0794624845110596 1 0.0143724083900452 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UAP1 ENSG00000117143 CDS Human protein_coding chr1:162557436 chr1:162557442 synonymous SNV . 0 27 hm5C_associated_SNPs_24999 0 0 1 0 1 UAP1 chr1:162557458 5'GT 162557458 Upstream 17bp
chr1 31897680 31897680 1 + G A LGG 31897691 + 31897671 31897711 41 ATGCTCTGCGTGAGCAGCAGCCGGGACCCCCGGGCTGCCAT ATGCTCTGCATGAGCAGCAGCCGGGACCCCCGGGCTGCCAT < 41bp 1 0.637341080977454 1 0.842674076557159 experiment 0.725317838045091 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31897691 chr1:31897680 nonsynonymous SNV 0.462 4 10 hm5C_associated_SNPs_25000 0 0 1 0 1 SERINC2 chr1:31897720 5'GT 31897720 Upstream 41bp
chr3 160137299 160137299 1 + T A LGG 160137312 + 160137292 160137332 41 AAAAAAATCTGGCAGGATTCCAGGAATATATGGAAGATTGG AAAAAAAACTGGCAGGATTCCAGGAATATATGGAAGATTGG < 41bp 1 0.798460731118308 1 0.475194811820984 experiment 0.403078537763383 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160137312 chr3:160137299 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_25002 0 0 1 0 1 SMC4 chr3:160137331 5'GT 160137331 Upstream 33bp
chr17 1636832 1636832 1 + C T LGG 1636828 + 1636808 1636848 41 CACTCCTATCCAGGTGACATCATCCGGAAAATCATCCCCAA CACTCCTATCCAGGTGACATCATCTGGAAAATCATCCCCAA < 41bp 1 0.167604513500778 1 0.548644304275513 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1636828 chr17:1636832 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_25003 0 0 0 0 1 WDR81 chr17:1636821 3'AG 1636821 Downstream 12bp
chr6 25450191 25450191 1 + A G LGG 25450192 + 25450172 25450212 41 AGTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAGCA AGTCTCCAGGCGCTGTGGGGCAGCCAGACCGTGGCTGAGCA < 41bp 1 0.415232537624253 1 0.490214794874191 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25450192 chr6:25450191 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_25004 0 0 0 0 2 CARMIL1 chr6:25450126 3'AG 25450126 Downstream 66bp
chr6 25450191 25450191 1 + A G LGG 25450192 + 25450172 25450212 41 AGTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAGCA AGTCTCCAGGCGCTGTGGGGCAGCCAGACCGTGGCTGAGCA < 41bp 1 0.415232537624253 1 0.490214794874191 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25450192 chr6:25450191 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_25004 0 0 0 0 2 CARMIL1 chr6:25450223 5'GT 25450223 Upstream 33bp
chr9 133355812 133355812 1 + C T LGG 133355811 + 133355791 133355831 41 CGTATTGACATCGTGGAGAACCGCTTCATTGGAATGAAGTC CGTATTGACATCGTGGAGAACTGCTTCATTGGAATGAAGTC < 41bp 1 0.286249230485728 1 0.247995525598526 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ASS1 ENSG00000130707 CDS Human protein_coding chr9:133355811 chr9:133355812 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_25005 1 0 0 0 2 ASS1 chr9:133355772 3'AG 133355772 Downstream 41bp
chr9 133355812 133355812 1 + C T LGG 133355811 + 133355791 133355831 41 CGTATTGACATCGTGGAGAACCGCTTCATTGGAATGAAGTC CGTATTGACATCGTGGAGAACTGCTTCATTGGAATGAAGTC < 41bp 1 0.286249230485728 1 0.247995525598526 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ASS1 ENSG00000130707 CDS Human protein_coding chr9:133355811 chr9:133355812 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_25005 1 0 0 0 2 ASS1 chr9:133355836 5'GT 133355836 Upstream 25bp
chr1 153745465 153745465 1 + C T LGG 153745464 + 153745444 153745484 41 TCCACCAAGCCACCCAAGAGCCGGCGAAAAGCAGCTCTGTC TCCACCAAGCCACCCAAGAGCTGGCGAAAAGCAGCTCTGTC < 41bp 1 0.560789849729733 1 0.639676928520203 experiment 0.878420300540535 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control INTS3 ENSG00000143624 CDS Human protein_coding chr1:153745464 chr1:153745465 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_25006 0 0 1 0 2 INTS3 chr1:153745401 3'AG 153745401 Downstream 65bp
chr1 153745465 153745465 1 + C T LGG 153745464 + 153745444 153745484 41 TCCACCAAGCCACCCAAGAGCCGGCGAAAAGCAGCTCTGTC TCCACCAAGCCACCCAAGAGCTGGCGAAAAGCAGCTCTGTC < 41bp 1 0.560789849729733 1 0.639676928520203 experiment 0.878420300540535 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control INTS3 ENSG00000143624 CDS Human protein_coding chr1:153745464 chr1:153745465 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_25006 0 0 1 0 2 INTS3 chr1:153745557 5'GT 153745557 Upstream 93bp
chr11 210610 210610 1 + C T LGG 210603 + 210583 210623 41 CTTTACCGACACCTGGGGACCCTTCTCCGGCACTGTGTGAT CTTTACCGACACCTGGGGACCCTTCTCTGGCACTGTGTGAT < 41bp 1 0.012692956713447 1 0.0794930756092072 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:210603 chr11:210610 nonsynonymous SNV 0.897 2 28 hm5C_associated_SNPs_25007 0 0 1 0 2 RIC8A chr11:210571 3'AG 210571 Downstream 40bp
chr11 210610 210610 1 + C T LGG 210603 + 210583 210623 41 CTTTACCGACACCTGGGGACCCTTCTCCGGCACTGTGTGAT CTTTACCGACACCTGGGGACCCTTCTCTGGCACTGTGTGAT < 41bp 1 0.012692956713447 1 0.0794930756092072 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:210603 chr11:210610 nonsynonymous SNV 0.897 2 28 hm5C_associated_SNPs_25007 0 0 1 0 2 RIC8A chr11:210662 5'GT 210662 Upstream 53bp
chr6 144724310 144724310 1 + G A LGG 144724309 + 144724289 144724329 41 TTACCAAATGGATAAATGCTCGATTTTCAAAGGTAACTGAG TTACCAAATGGATAAATGCTCAATTTTCAAAGGTAACTGAG < 41bp 1 0.0694063439946827 1 0.0900899767875671 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144724309 chr6:144724310 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_25008 0 0 1 0 2 UTRN chr6:144724259 3'AG 144724259 Downstream 52bp
chr6 144724310 144724310 1 + G A LGG 144724309 + 144724289 144724329 41 TTACCAAATGGATAAATGCTCGATTTTCAAAGGTAACTGAG TTACCAAATGGATAAATGCTCAATTTTCAAAGGTAACTGAG < 41bp 1 0.0694063439946827 1 0.0900899767875671 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144724309 chr6:144724310 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_25008 0 0 1 0 2 UTRN chr6:144724320 5'GT 144724320 Upstream 11bp
chr11 10783517 10783517 1 + C T LGG 10783524 + 10783504 10783544 41 TTAAAAATGGTGTCCAGCTTCTTTCCAGAGCCTATACTATT TTAAAAATGGTGTTCAGCTTCTTTCCAGAGCCTATACTATT < 41bp 1 0.037820110595125 1 0.066793829202652 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTR9 ENSG00000198730 CDS Human protein_coding chr11:10783524 chr11:10783517 synonymous SNV . 0 14 hm5C_associated_SNPs_25009 0 0 1 0 2 CTR9 chr11:10783494 3'AG 10783494 Downstream 24bp
chr11 10783517 10783517 1 + C T LGG 10783524 + 10783504 10783544 41 TTAAAAATGGTGTCCAGCTTCTTTCCAGAGCCTATACTATT TTAAAAATGGTGTTCAGCTTCTTTCCAGAGCCTATACTATT < 41bp 1 0.037820110595125 1 0.066793829202652 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTR9 ENSG00000198730 CDS Human protein_coding chr11:10783524 chr11:10783517 synonymous SNV . 0 14 hm5C_associated_SNPs_25009 0 0 1 0 2 CTR9 chr11:10783601 5'GT 10783601 Upstream 85bp
chr19 11141499 11141499 1 + G A LGG 11141506 + 11141486 11141526 41 AGCACCCGGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGGC AGCACCCGGGCTGAGGGGCTCGGCCTGAACCTCCAGTCGGC < 41bp 1 0.412282170290686 1 0.465484797954559 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141506 chr19:11141499 nonsynonymous SNV 0.981 4 14 hm5C_associated_SNPs_25012 0 0 1 0 2 SMARCA4 chr19:11141406 3'AG 11141406 Downstream 94bp
chr19 11141499 11141499 1 + G A LGG 11141506 + 11141486 11141526 41 AGCACCCGGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGGC AGCACCCGGGCTGAGGGGCTCGGCCTGAACCTCCAGTCGGC < 41bp 1 0.412282170290686 1 0.465484797954559 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141506 chr19:11141499 nonsynonymous SNV 0.981 4 14 hm5C_associated_SNPs_25012 0 0 1 0 2 SMARCA4 chr19:11141569 5'GT 11141569 Upstream 71bp
chrX 107821211 107821211 1 + A T LGG 107821198 + 107821178 107821218 41 TTAGGGCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGG TTAGGGCCCTCCTGGTCCACCAGGACTTCCAGGTCCTAAGG < 41bp 1 0.533248880889058 1 0.665052175521851 experiment 0.933502238221884 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107821198 chrX:107821211 synonymous SNV . 0 34 hm5C_associated_SNPs_25013 0 0 1 0 2 COL4A5 chrX:107821182 3'AG 107821182 Downstream 30bp
chrX 107821211 107821211 1 + A T LGG 107821198 + 107821178 107821218 41 TTAGGGCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGG TTAGGGCCCTCCTGGTCCACCAGGACTTCCAGGTCCTAAGG < 41bp 1 0.533248880889058 1 0.665052175521851 experiment 0.933502238221884 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107821198 chrX:107821211 synonymous SNV . 0 34 hm5C_associated_SNPs_25013 0 0 1 0 2 COL4A5 chrX:107821217 5'GT 107821217 Upstream 7bp
chrX 107821211 107821211 1 + A T LGG 107821203 + 107821183 107821223 41 GCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGGTAATT GCCCTCCTGGTCCACCAGGACTTCCAGGTCCTAAGGTAATT < 41bp 1 0.0324155785452544 1 0.0243670344352722 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107821203 chrX:107821211 synonymous SNV . 0 29 hm5C_associated_SNPs_25014 0 0 1 0 2 COL4A5 chrX:107821182 3'AG 107821182 Downstream 30bp
chrX 107821211 107821211 1 + A T LGG 107821203 + 107821183 107821223 41 GCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGGTAATT GCCCTCCTGGTCCACCAGGACTTCCAGGTCCTAAGGTAATT < 41bp 1 0.0324155785452544 1 0.0243670344352722 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107821203 chrX:107821211 synonymous SNV . 0 29 hm5C_associated_SNPs_25014 0 0 1 0 2 COL4A5 chrX:107821217 5'GT 107821217 Upstream 7bp
chr1 161326623 161326623 1 + G A LGG 161326622 + 161326602 161326642 41 ATCATACCTGGAATGGGATCCGACACTTGGTAAGTTAATTC ATCATACCTGGAATGGGATCCAACACTTGGTAAGTTAATTC < 41bp 1 0.511352111978677 1 0.393554419279099 experiment 0.977295776042647 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SDHC ENSG00000143252 CDS Human protein_coding chr1:161326622 chr1:161326623 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_25015 1 0 1 0 1 SDHC chr1:161326630 5'GT 161326630 Upstream 8bp
chr1 248039261 248039261 1 + C T LGG 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGAGTCTGCTCTTGACCGCCGACCTGTGCAGTGTGCA < 41bp 1 0.658704730110725 1 0.174125611782074 experiment 0.682590539778549 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039261 nonsynonymous SNV 0.007 3 31 hm5C_associated_SNPs_25016 0 0 0 0 2 TRIM58 chr1:248039202 3'AG 248039202 Downstream 60bp
chr1 248039261 248039261 1 + C T LGG 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGAGTCTGCTCTTGACCGCCGACCTGTGCAGTGTGCA < 41bp 1 0.658704730110725 1 0.174125611782074 experiment 0.682590539778549 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039261 nonsynonymous SNV 0.007 3 31 hm5C_associated_SNPs_25016 0 0 0 0 2 TRIM58 chr1:248039339 5'GT 248039339 Upstream 79bp
chr7 6631413 6631413 1 + G A LGG 6631401 + 6631381 6631421 41 CAGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCT CAGCCCTCAAGGGAACAAAGCCGATGACAGCCAGATGAGCT < 41bp 1 0.144566185027081 1 0.122439563274384 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631401 chr7:6631413 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_25017 0 0 1 0 2 C7orf26 chr7:6631334 3'AG 6631334 Downstream 80bp
chr7 6631413 6631413 1 + G A LGG 6631401 + 6631381 6631421 41 CAGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCT CAGCCCTCAAGGGAACAAAGCCGATGACAGCCAGATGAGCT < 41bp 1 0.144566185027081 1 0.122439563274384 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631401 chr7:6631413 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_25017 0 0 1 0 2 C7orf26 chr7:6631498 5'GT 6631498 Upstream 86bp
chr7 6631413 6631413 1 + G A LGG 6631402 + 6631382 6631422 41 AGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCTT AGCCCTCAAGGGAACAAAGCCGATGACAGCCAGATGAGCTT < 41bp 1 0.423597296828801 1 0.506302118301392 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631402 chr7:6631413 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_25018 0 0 1 0 2 C7orf26 chr7:6631334 3'AG 6631334 Downstream 80bp
chr7 6631413 6631413 1 + G A LGG 6631402 + 6631382 6631422 41 AGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCTT AGCCCTCAAGGGAACAAAGCCGATGACAGCCAGATGAGCTT < 41bp 1 0.423597296828801 1 0.506302118301392 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631402 chr7:6631413 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_25018 0 0 1 0 2 C7orf26 chr7:6631498 5'GT 6631498 Upstream 86bp
chr5 54720585 54720585 1 + C T LGG 54720581 + 54720561 54720601 41 CAAGAGAGATATTGTGTTTGCTGCCAGCCTCTACTTGTAGA CAAGAGAGATATTGTGTTTGCTGCTAGCCTCTACTTGTAGA < 41bp 1 0.356789904084647 1 0.0976587235927582 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54720581 chr5:54720585 synonymous SNV . 0 25 hm5C_associated_SNPs_25019 0 0 1 0 1 SKIV2L2 chr5:54720548 3'AG 54720548 Downstream 38bp
chr2 85852729 85852729 1 + G A LGG 85852718 + 85852698 85852738 41 GCAAACTTGGACAAGCAAGCCAAATTGTCCCGGGCATATGA GCAAACTTGGACAAGCAAGCCAAATTGTCCCAGGCATATGA < 41bp 1 0.382869302174902 1 0.176977515220642 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP39 ENSG00000168883 CDS Human protein_coding chr2:85852718 chr2:85852729 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_25022 0 0 1 0 2 USP39 chr2:85852662 3'AG 85852662 Downstream 68bp
chr2 85852729 85852729 1 + G A LGG 85852718 + 85852698 85852738 41 GCAAACTTGGACAAGCAAGCCAAATTGTCCCGGGCATATGA GCAAACTTGGACAAGCAAGCCAAATTGTCCCAGGCATATGA < 41bp 1 0.382869302174902 1 0.176977515220642 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP39 ENSG00000168883 CDS Human protein_coding chr2:85852718 chr2:85852729 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_25022 0 0 1 0 2 USP39 chr2:85852814 5'GT 85852814 Upstream 86bp
chr12 57588464 57588464 1 + G A LGG 57588474 + 57588454 57588494 41 TGAACATGGCGAGGACGAGACCCACTGCAGTGAGTGACCAC TGAACATGGCAAGGACGAGACCCACTGCAGTGAGTGACCAC < 41bp 1 0.0336867989449096 1 0.0297261476516724 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57588474 chr12:57588464 nonsynonymous SNV 0.990 1 11 hm5C_associated_SNPs_25023 0 0 1 0 1 LRP1 chr12:57588482 5'GT 57588482 Upstream 19bp
chr19 36218411 36218411 1 + C T LGG 36218408 + 36218388 36218428 41 CTGCGGACCGTGTGCTGGGGCAGCGCAGCCCCGCTGGCGAG CTGCGGACCGTGTGCTGGGGCAGTGCAGCCCCGCTGGCGAG < 41bp 1 0.380180767390552 1 0.360568225383759 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36218408 chr19:36218411 nonsynonymous SNV 0.019 1 24 hm5C_associated_SNPs_25024 0 0 1 0 1 KMT2B chr19:36218339 3'AG 36218339 Downstream 73bp
chr19 17313045 17313045 1 + A C LGG 17313031 + 17313011 17313051 41 GAGCGTGGCCAGAAGGACACCAACCTGGTCCTCAACCTCTT GAGCGTGGCCAGAAGGACACCAACCTGGTCCTCACCCTCTT < 41bp 1 0.183103505775339 1 0.0766319036483765 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17313031 chr19:17313045 nonsynonymous SNV 0.998 5 35 hm5C_associated_SNPs_25025 0 0 1 0 1 MYO9B chr19:17313112 5'GT 17313112 Upstream 68bp
chr2 97875420 97875420 1 + T G LGG 97875436 + 97875416 97875456 41 AGTGTCTTCTCGGAAAAAACCAGCCTTGAAGGTAATGAAAC AGTGGCTTCTCGGAAAAAACCAGCCTTGAAGGTAATGAAAC < 41bp 1 0.317724542198913 1 0.323364585638046 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD36 ENSG00000135976 CDS Human protein_coding chr2:97875436 chr2:97875420 nonsynonymous SNV 0.005 1 5 hm5C_associated_SNPs_25026 0 0 0 0 1 ANKRD36 chr2:97875446 5'GT 97875446 Upstream 27bp
chr22 40762494 40762494 1 + G A LGG 40762482 + 40762462 40762502 41 AGGTGTATCCCCTGTTAAAACCATATGAAAGCGTGATGAAG AGGTGTATCCCCTGTTAAAACCATATGAAAGCATGATGAAG < 41bp 1 0.346411937417102 1 0.215944737195969 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ADSL ENSG00000239900 CDS Human protein_coding chr22:40762482 chr22:40762494 nonsynonymous SNV 0.706 2 33 hm5C_associated_SNPs_25028 0 0 1 0 1 ADSL chr22:40762440 3'AG 40762440 Downstream 55bp
chr2 217364056 217364056 1 + C T LGG 217364052 + 217364032 217364072 41 GGGACCCGCTATGGGGCCTCCCTCCGGAAAATGGTGAAGAA GGGACCCGCTATGGGGCCTCCCTCTGGAAAATGGTGAAGAA < 41bp 1 0.186668711547187 1 0.190221905708313 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364052 chr2:217364056 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_25029 0 0 1 0 2 RPL37A chr2:217363993 3'AG 217363993 Downstream 64bp
chr2 217364056 217364056 1 + C T LGG 217364052 + 217364032 217364072 41 GGGACCCGCTATGGGGCCTCCCTCCGGAAAATGGTGAAGAA GGGACCCGCTATGGGGCCTCCCTCTGGAAAATGGTGAAGAA < 41bp 1 0.186668711547187 1 0.190221905708313 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364052 chr2:217364056 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_25029 0 0 1 0 2 RPL37A chr2:217364121 5'GT 217364121 Upstream 66bp
chr2 32824921 32824921 1 + G A LGG 32824918 + 32824898 32824938 41 TCTTGTGAATCTAGAGACAACTGGTGGTCATAGCGTGCGAT TCTTGTGAATCTAGAGACAACTGATGGTCATAGCGTGCGAT < 41bp 1 0.116399671187909 1 0.143539130687714 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32824918 chr2:32824921 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_25031 0 0 1 0 1 BIRC6 chr2:32824967 5'GT 32824967 Upstream 47bp
chr2 32824921 32824921 1 + G A LGG 32824931 + 32824911 32824951 41 GAGACAACTGGTGGTCATAGCGTGCGATTCAATCCAAACCT GAGACAACTGATGGTCATAGCGTGCGATTCAATCCAAACCT < 41bp 1 0.103540578188235 1 0.527564227581024 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32824931 chr2:32824921 nonsynonymous SNV 0.995 4 11 hm5C_associated_SNPs_25032 0 0 1 0 1 BIRC6 chr2:32824967 5'GT 32824967 Upstream 47bp
chr10 3155622 3155622 1 + C T LGG 3155619 + 3155599 3155639 41 ACCCGCGGCTGGGATGAACGCAGCCGTACGCTCAGCTGTGC ACCCGCGGCTGGGATGAACGCAGTCGTACGCTCAGCTGTGC < 41bp 1 0.524140058814917 1 0.556307315826416 experiment 0.951719882370165 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKP ENSG00000067057 CDS Human protein_coding chr10:3155619 chr10:3155622 nonsynonymous SNV 0.216 3 24 hm5C_associated_SNPs_25034 0 0 1 0 1 PFKP chr10:3155710 5'GT 3155710 Upstream 89bp
chr7 55259451 55259451 1 + G A LGG 55259432 + 55259412 55259452 41 GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGA GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCAA < 41bp 1 0.081600611714254 1 0.254955679178238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55259432 chr7:55259451 nonsynonymous SNV 0.962 2 40 hm5C_associated_SNPs_25035 0 0 1 0 1 EGFR chr7:55259412 3'AG 55259412 Downstream 40bp
chr18 7955215 7955215 1 + C T LGG 7955214 + 7955194 7955234 41 ACTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTG ACTCCATCAATGGGGATGGGCTCATTGTGGCCCGAGAGGTG < 41bp 1 0.229973789971932 1 0.182594656944275 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955214 chr18:7955215 nonsynonymous SNV 0.953 4 22 hm5C_associated_SNPs_25036 0 0 0 0 1 PTPRM chr18:7955119 3'AG 7955119 Downstream 97bp
chr18 7955215 7955215 1 + C T LGG 7955216 + 7955196 7955236 41 TCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGGA TCCATCAATGGGGATGGGCTCATTGTGGCCCGAGAGGTGGA < 41bp 1 0.146952422474465 1 0.279243618249893 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955216 chr18:7955215 nonsynonymous SNV 0.953 4 20 hm5C_associated_SNPs_25037 0 0 0 0 1 PTPRM chr18:7955119 3'AG 7955119 Downstream 97bp
chr18 7955215 7955215 1 + C T LGG 7955224 + 7955204 7955244 41 TGGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCA TGGGGATGGGCTCATTGTGGCCCGAGAGGTGGAGTACTGCA < 41bp 1 0.518980161630113 1 0.158620029687881 experiment 0.962039676739775 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955224 chr18:7955215 nonsynonymous SNV 0.953 4 12 hm5C_associated_SNPs_25038 0 0 0 0 1 PTPRM chr18:7955119 3'AG 7955119 Downstream 97bp
chr18 7955215 7955215 1 + C T LGG 7955225 + 7955205 7955245 41 GGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCAC GGGGATGGGCTCATTGTGGCCCGAGAGGTGGAGTACTGCAC < 41bp 1 0.299826090512485 1 0.519174039363861 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955225 chr18:7955215 nonsynonymous SNV 0.953 4 11 hm5C_associated_SNPs_25039 0 0 0 0 1 PTPRM chr18:7955119 3'AG 7955119 Downstream 97bp
chr18 7955215 7955215 1 + C T LGG 7955226 + 7955206 7955246 41 GGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCACG GGGATGGGCTCATTGTGGCCCGAGAGGTGGAGTACTGCACG < 41bp 1 0.680919777922695 1 0.573129296302795 experiment 0.63816044415461 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955226 chr18:7955215 nonsynonymous SNV 0.953 4 10 hm5C_associated_SNPs_25040 0 0 0 0 1 PTPRM chr18:7955119 3'AG 7955119 Downstream 97bp
chr3 33887073 33887073 1 + G A LGG 33887074 + 33887054 33887094 41 CCAGCAAAGACCATGCAGGGCAGTGAGGTAAGAAGGACACT CCAGCAAAGACCATGCAGGACAGTGAGGTAAGAAGGACACT < 41bp 1 0.343879419223548 1 0.147157996892929 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33887074 chr3:33887073 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_25041 0 0 1 0 1 PDCD6IP chr3:33887080 5'GT 33887080 Upstream 8bp
chr3 158383135 158383135 1 + G A LGG 158383132 + 158383112 158383152 41 TTCTTCTTTTAAAGAACGATCTGGAAAAATTTTCAAAAGGT TTCTTCTTTTAAAGAACGATCTGAAAAAATTTTCAAAAGGT < 41bp 1 0.407599924166842 1 0.460764467716217 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GFM1 ENSG00000168827 CDS Human protein_coding chr3:158383132 chr3:158383135 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_25043 0 0 0 0 1 GFM1 chr3:158383126 3'AG 158383126 Downstream 10bp
chr9 137666723 137666723 1 + G A LGG 137666716 + 137666696 137666736 41 TGGTTTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTA TGGTTTTAGGGTCCACCTGGCCCCCAGAGTCCGATTGGCTA < 41bp 1 0.0327041088213173 1 0.0358067452907562 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137666716 chr9:137666723 nonsynonymous SNV 0.971 4 28 hm5C_associated_SNPs_25045 0 0 0 0 1 COL5A1 chr9:137666758 5'GT 137666758 Upstream 36bp
chr9 137666723 137666723 1 + G A LGG 137666717 + 137666697 137666737 41 GGTTTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTAC GGTTTTAGGGTCCACCTGGCCCCCAGAGTCCGATTGGCTAC < 41bp 1 0.441001046289643 1 0.316171109676361 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137666717 chr9:137666723 nonsynonymous SNV 0.971 4 27 hm5C_associated_SNPs_25046 0 0 0 0 1 COL5A1 chr9:137666758 5'GT 137666758 Upstream 36bp
chr9 137666723 137666723 1 + G A LGG 137666718 + 137666698 137666738 41 GTTTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACC GTTTTAGGGTCCACCTGGCCCCCAGAGTCCGATTGGCTACC < 41bp 1 0.117699620685092 1 0.0502212643623352 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137666718 chr9:137666723 nonsynonymous SNV 0.971 4 26 hm5C_associated_SNPs_25047 0 0 0 0 1 COL5A1 chr9:137666758 5'GT 137666758 Upstream 36bp
chr9 137666723 137666723 1 + G A LGG 137666719 + 137666699 137666739 41 TTTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACCC TTTTAGGGTCCACCTGGCCCCCAGAGTCCGATTGGCTACCC < 41bp 1 0.42942430442204 1 0.291112184524536 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137666719 chr9:137666723 nonsynonymous SNV 0.971 4 25 hm5C_associated_SNPs_25048 0 0 0 0 1 COL5A1 chr9:137666758 5'GT 137666758 Upstream 36bp
chr9 137666723 137666723 1 + G A LGG 137666720 + 137666700 137666740 41 TTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACCCA TTTAGGGTCCACCTGGCCCCCAGAGTCCGATTGGCTACCCA < 41bp 1 0.309446229829622 1 0.718374788761139 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137666720 chr9:137666723 nonsynonymous SNV 0.971 4 24 hm5C_associated_SNPs_25049 0 0 0 0 1 COL5A1 chr9:137666758 5'GT 137666758 Upstream 36bp
chr7 44836377 44836377 1 + C T LGG 44836378 + 44836358 44836398 41 TCGACGGCGAGCCCTTGGGCCGCGTCTCCTTTGAGGTCGGG TCGACGGCGAGCCCTTGGGTCGCGTCTCCTTTGAGGTCGGG < 41bp 1 0.625478955428258 1 0.119342029094696 experiment 0.749042089143485 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPIA ENSG00000196262 CDS Human protein_coding chr7:44836378 chr7:44836377 synonymous SNV . 0 20 hm5C_associated_SNPs_25050 0 0 1 0 1 PPIA chr7:44836392 5'GT 44836392 Upstream 16bp
chr19 50158054 50158054 1 + C T LGG 50158043 + 50158023 50158063 41 CTGGGGGGCTGCGGTTCGACCCCCCCCACCCCCACCGGGCT CTGGGGGGCTGCGGTTCGACCCCCCCCACCCTCACCGGGCT < 41bp 1 0.141475448205171 1 0.172426342964172 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50158043 chr19:50158054 nonsynonymous SNV 0.994 4 32 hm5C_associated_SNPs_25052 0 0 1 0 1 SCAF1 chr19:50158127 5'GT 50158127 Upstream 74bp
chr2 3623241 3623241 1 + G A LGG 3623246 + 3623226 3623266 41 GAAGCCCAATGGCGAGAAGCCGGACGAGTTCGAGTCCGGCA GAAGCCCAATGGCGAAAAGCCGGACGAGTTCGAGTCCGGCA < 41bp 1 0.732500027547664 1 0.312350302934647 experiment 0.534999944904673 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RPS7 ENSG00000171863 CDS Human protein_coding chr2:3623246 chr2:3623241 synonymous SNV . 0 16 hm5C_associated_SNPs_25053 0 0 1 0 1 RPS7 chr2:3623274 5'GT 3623274 Upstream 34bp
chr2 160031627 160031627 1 + C T LGG 160031614 + 160031594 160031634 41 AGCCCCAACTACAGAGCATGCTGAGCCTCCGATCCTGTGTG AGCCCCAACTACAGAGCATGCTGAGCCTCCGATTCTGTGTG < 41bp 1 0.508748840783648 1 0.156260877847672 experiment 0.982502318432703 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160031614 chr2:160031627 nonsynonymous SNV 0.968 4 34 hm5C_associated_SNPs_25055 0 0 0 0 1 TANC1 chr2:160031695 5'GT 160031695 Upstream 69bp
chr17 7838346 7838346 1 + C T LGG 7838362 + 7838342 7838382 41 CAGCCCAAGCCCTGGAGGAGCTGTTTCCCCGCTACACCAGC CAGCTCAAGCCCTGGAGGAGCTGTTTCCCCGCTACACCAGC < 41bp 1 0.201749683144536 1 0.109773278236389 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNTROB ENSG00000170037 CDS Human protein_coding chr17:7838362 chr17:7838346 synonymous SNV . 0 5 hm5C_associated_SNPs_25056 0 0 1 0 1 CNTROB chr17:7838307 3'AG 7838307 Downstream 40bp
chr14 73569942 73569942 1 + G A LGG 73569939 + 73569919 73569959 41 GCAAAAAGGAAAAAGAAAGACAGGAAATTGAGAAAGAACGG GCAAAAAGGAAAAAGAAAGACAGAAAATTGAGAAAGAACGG < 41bp 1 0.712266858968361 1 0.735930383205414 experiment 0.575466282063278 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RBM25 ENSG00000119707 CDS Human protein_coding chr14:73569939 chr14:73569942 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_25058 0 0 1 0 1 RBM25 chr14:73569900 3'AG 73569900 Downstream 43bp
chr16 83813722 83813722 1 + C T LGG 83813711 + 83813691 83813731 41 TGTAGTCATTTTGGGAGCATCAGATAAGGATCTTCACCCGA TGTAGTCATTTTGGGAGCATCAGATAAGGATTTTCACCCGA < 41bp 1 0.259737132822913 1 0.535329878330231 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:83813711 chr16:83813722 nonsynonymous SNV 0.996 2 32 hm5C_associated_SNPs_25059 0 0 0 0 1 CDH13 chr16:83813806 5'GT 83813806 Upstream 85bp
chr20 330377 330377 1 + C T LGG 330383 + 330363 330403 41 CGCTCCTACCTGCACCTCTTCTATGAGGACTGTGCAGGCAC CGCTCCTACCTGCATCTCTTCTATGAGGACTGTGCAGGCAC < 41bp 1 0.343561938087152 1 0.0899324119091034 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NRSN2 ENSG00000125841 CDS Human protein_coding chr20:330383 chr20:330377 synonymous SNV . 0 15 hm5C_associated_SNPs_25064 0 0 1 0 2 NRSN2 chr20:330282 3'AG 330282 Downstream 96bp
chr20 330377 330377 1 + C T LGG 330383 + 330363 330403 41 CGCTCCTACCTGCACCTCTTCTATGAGGACTGTGCAGGCAC CGCTCCTACCTGCATCTCTTCTATGAGGACTGTGCAGGCAC < 41bp 1 0.343561938087152 1 0.0899324119091034 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NRSN2 ENSG00000125841 CDS Human protein_coding chr20:330383 chr20:330377 synonymous SNV . 0 15 hm5C_associated_SNPs_25064 0 0 1 0 2 NRSN2 chr20:330476 5'GT 330476 Upstream 100bp
chr20 330377 330377 1 + C T LGG 330392 + 330372 330412 41 CTGCACCTCTTCTATGAGGACTGTGCAGGCACTGCTCTCAG CTGCATCTCTTCTATGAGGACTGTGCAGGCACTGCTCTCAG < 41bp 1 0.386863581078483 1 0.0507500469684601 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NRSN2 ENSG00000125841 CDS Human protein_coding chr20:330392 chr20:330377 synonymous SNV . 0 6 hm5C_associated_SNPs_25065 0 0 1 0 2 NRSN2 chr20:330282 3'AG 330282 Downstream 96bp
chr20 330377 330377 1 + C T LGG 330392 + 330372 330412 41 CTGCACCTCTTCTATGAGGACTGTGCAGGCACTGCTCTCAG CTGCATCTCTTCTATGAGGACTGTGCAGGCACTGCTCTCAG < 41bp 1 0.386863581078483 1 0.0507500469684601 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NRSN2 ENSG00000125841 CDS Human protein_coding chr20:330392 chr20:330377 synonymous SNV . 0 6 hm5C_associated_SNPs_25065 0 0 1 0 2 NRSN2 chr20:330476 5'GT 330476 Upstream 100bp
chr12 105543469 105543469 1 + C T LGG 105543489 + 105543469 105543509 41 CCAGATTGATTAAAGATATTCGATTTTTCAGGGAAATTAAG TCAGATTGATTAAAGATATTCGATTTTTCAGGGAAATTAAG < 41bp 1 0.147578579229577 1 0.0533016920089722 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105543489 chr12:105543469 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_25066 0 0 0 0 2 WASHC4 chr12:105543393 3'AG 105543393 Downstream 77bp
chr12 105543469 105543469 1 + C T LGG 105543489 + 105543469 105543509 41 CCAGATTGATTAAAGATATTCGATTTTTCAGGGAAATTAAG TCAGATTGATTAAAGATATTCGATTTTTCAGGGAAATTAAG < 41bp 1 0.147578579229577 1 0.0533016920089722 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105543489 chr12:105543469 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_25066 0 0 0 0 2 WASHC4 chr12:105543527 5'GT 105543527 Upstream 59bp
chr2 48033352 48033352 1 + C T LGG 48033370 + 48033350 48033390 41 TACTGCAACATTTGATGGGACGGCAATAGCAAATGCAGTTG TATTGCAACATTTGATGGGACGGCAATAGCAAATGCAGTTG < 41bp 1 0.703491801286036 1 0.175381869077682 experiment 0.593016397427929 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MSH6 ENSG00000116062 CDS Human protein_coding chr2:48033370 chr2:48033352 nonsynonymous SNV 0.994 5 3 hm5C_associated_SNPs_25067 1 0 1 0 1 MSH6 chr2:48033343 3'AG 48033343 Downstream 10bp
chr7 150761801 150761801 1 + G A LGG 150761806 + 150761786 150761826 41 GCCAGCGAGGCTGAGGGGGCCCGGGCTCTCACTCAGCCGTC GCCAGCGAGGCTGAGAGGGCCCGGGCTCTCACTCAGCCGTC < 41bp 1 0.556958067965951 1 0.323626428842545 experiment 0.886083864068098 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150761806 chr7:150761801 nonsynonymous SNV 0.137 0 16 hm5C_associated_SNPs_25068 0 0 1 0 1 SLC4A2 chr7:150761854 5'GT 150761854 Upstream 54bp
chr3 50131259 50131259 1 + G A LGG 50131269 + 50131249 50131289 41 GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCAT GAGAGGGAGAACAAGACCATCATGCTGCGCGGCCTTCCCAT < 41bp 1 0.418122029996041 1 0.216083914041519 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131269 chr3:50131259 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_25069 0 0 1 0 2 RBM5 chr3:50131254 3'AG 50131254 Downstream 6bp
chr3 50131259 50131259 1 + G A LGG 50131269 + 50131249 50131289 41 GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCAT GAGAGGGAGAACAAGACCATCATGCTGCGCGGCCTTCCCAT < 41bp 1 0.418122029996041 1 0.216083914041519 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131269 chr3:50131259 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_25069 0 0 1 0 2 RBM5 chr3:50131308 5'GT 50131308 Upstream 50bp
chrX 70779241 70779241 1 + C T LGG 70779251 + 70779231 70779271 41 CTTATGCAGTCTATTCCAGGCATGCACAATCCTGATAAATT CTTATGCAGTTTATTCCAGGCATGCACAATCCTGATAAATT < 41bp 1 0.0660741512451955 1 0.0562679171562195 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70779251 chrX:70779241 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_25070 0 0 1 0 1 OGT chrX:70779275 5'GT 70779275 Upstream 35bp
chr12 110770427 110770427 1 + G A LGG 110770433 + 110770413 110770453 41 GGACAGAGTGGAAGGTGATACTTGTTCCCTTAATGAGTTTA GGACAGAGTGGAAGATGATACTTGTTCCCTTAATGAGTTTA < 41bp 1 0.177084683476781 1 0.0827886164188385 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP2A2 ENSG00000174437 CDS Human protein_coding chr12:110770433 chr12:110770427 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_25071 0 0 1 0 1 ATP2A2 chr12:110770402 3'AG 110770402 Downstream 26bp
chr1 164790803 164790803 1 + G A LGG 164790815 + 164790795 164790835 41 ATCAGCCAGACAGGAGGATACAGTGATGGACTCGCAGCCAG ATCAGCCAAACAGGAGGATACAGTGATGGACTCGCAGCCAG < 41bp 1 0.633749889504532 1 0.370991379022598 experiment 0.732500220990937 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164790815 chr1:164790803 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_25072 0 0 1 0 1 PBX1 chr1:164790774 3'AG 164790774 Downstream 30bp
chr11 68115614 68115614 1 + C T LGG 68115603 + 68115583 68115623 41 GAAGCTGTACTGGACGGACTCAGAGACCAACCGCATCGAGG GAAGCTGTACTGGACGGACTCAGAGACCAACTGCATCGAGG < 41bp 1 0.666604947243917 1 0.759223818778992 experiment 0.666790105512165 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68115603 chr11:68115614 nonsynonymous SNV 0.983 4 32 hm5C_associated_SNPs_25073 0 0 0 0 1 LRP5 chr11:68115711 5'GT 68115711 Upstream 98bp
chr8 142176415 142176415 1 + C T LGG 142176432 + 142176412 142176452 41 TGCCATGCCTGAGCTGGCACCCAGGAACTCCTCGCTCCGGC TGCTATGCCTGAGCTGGCACCCAGGAACTCCTCGCTCCGGC < 41bp 1 0.467973773795429 1 0.878114759922028 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DENND3 ENSG00000105339 CDS Human protein_coding chr8:142176432 chr8:142176415 synonymous SNV . 0 4 hm5C_associated_SNPs_25074 0 0 0 0 1 DENND3 chr8:142176488 5'GT 142176488 Upstream 74bp
chr2 3623248 3623248 1 + G A LGG 3623246 + 3623226 3623266 41 GAAGCCCAATGGCGAGAAGCCGGACGAGTTCGAGTCCGGCA GAAGCCCAATGGCGAGAAGCCGAACGAGTTCGAGTCCGGCA < 41bp 1 0.614756839772906 1 0.235012143850327 experiment 0.770486320454188 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RPS7 ENSG00000171863 CDS Human protein_coding chr2:3623246 chr2:3623248 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_25075 0 0 1 0 1 RPS7 chr2:3623274 5'GT 3623274 Upstream 27bp
chr12 57552342 57552342 1 + C G LGG 57552333 + 57552313 57552353 41 CTGGACTTCCACGCTGAGACCGGCTTCATCTACTTTGCCGA CTGGACTTCCACGCTGAGACCGGCTTCATGTACTTTGCCGA < 41bp 1 0.116761421702299 1 0.399175971746445 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57552333 chr12:57552342 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_25078 0 0 0 0 1 LRP1 chr12:57552421 5'GT 57552421 Upstream 80bp
chrX 133511650 133511650 1 + G C LGG 133511658 + 133511638 133511678 41 TTTAAAAATCATGTCAAGCTCAGTTGAACAGAAAAAAGGGC TTTAAAAATCATCTCAAGCTCAGTTGAACAGAAAAAAGGGC < 41bp 1 0.206954761880937 1 0.302816808223724 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHF6 ENSG00000156531 CDS Human protein_coding chrX:133511658 chrX:133511650 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_25081 0 0 1 0 1 PHF6 chrX:133511602 3'AG 133511602 Downstream 49bp
chr7 55240750 55240750 1 + G A LGG 55240738 + 55240718 55240758 41 CCTCTTGCTGCTGGTGGTGGCCCTGGGGATCGGCCTCTTCA CCTCTTGCTGCTGGTGGTGGCCCTGGGGATCGACCTCTTCA < 41bp 1 0.24074758288601 1 0.390240132808685 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55240738 chr7:55240750 nonsynonymous SNV 0.430 1 33 hm5C_associated_SNPs_25082 0 0 1 0 2 EGFR chr7:55240676 3'AG 55240676 Downstream 75bp
chr7 55240750 55240750 1 + G A LGG 55240738 + 55240718 55240758 41 CCTCTTGCTGCTGGTGGTGGCCCTGGGGATCGGCCTCTTCA CCTCTTGCTGCTGGTGGTGGCCCTGGGGATCGACCTCTTCA < 41bp 1 0.24074758288601 1 0.390240132808685 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55240738 chr7:55240750 nonsynonymous SNV 0.430 1 33 hm5C_associated_SNPs_25082 0 0 1 0 2 EGFR chr7:55240817 5'GT 55240817 Upstream 68bp
chrX 149905114 149905114 1 + A T LGG 149905115 + 149905095 149905135 41 GTGCTTACCCAAATGCAGAACTTGTGTTCTTGGAGATCCAC GTGCTTACCCAAATGCAGATCTTGTGTTCTTGGAGATCCAC < 41bp 1 0.171604877038367 1 0.0352928638458252 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149905115 chrX:149905114 nonsynonymous SNV 0.327 2 20 hm5C_associated_SNPs_25083 0 0 1 1 1 MTMR1 chrX:149905067 3'AG 149905067 Downstream 48bp
chr19 3527700 3527700 1 + C T LGG 3527693 + 3527673 3527713 41 CCAAGATCCCCTTCAAGGTGCTGGACGCGCCCGAGCTGCAG CCAAGATCCCCTTCAAGGTGCTGGACGTGCCCGAGCTGCAG < 41bp 1 0.71418307258345 1 0.341096460819244 experiment 0.5716338548331 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3527693 chr19:3527700 nonsynonymous SNV 0.108 4 28 hm5C_associated_SNPs_25084 0 0 0 0 1 FZR1 chr19:3527629 3'AG 3527629 Downstream 72bp
chr17 7476160 7476160 1 + A C LGG 7476180 + 7476160 7476200 41 ATGTCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCA CTGTCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCA < 41bp 1 0.338396745887427 1 0.107684254646301 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7476180 chr17:7476160 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_25086 0 0 1 0 1 EIF4A1 chr17:7476182 5'GT 7476182 Upstream 23bp
chr1 154988753 154988753 1 + C T LGG 154988768 + 154988748 154988788 41 TCATGCCCGCACTGCCCAGCCCGCTTCCTGCACAGCTACGA TCATGTCCGCACTGCCCAGCCCGCTTCCTGCACAGCTACGA < 41bp 1 0.222212945864476 1 0.0889932215213776 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZBTB7B ENSG00000160685 CDS Human protein_coding chr1:154988768 chr1:154988753 synonymous SNV . 0 6 hm5C_associated_SNPs_25087 0 0 1 0 1 ZBTB7B chr1:154988696 3'AG 154988696 Downstream 58bp
chr11 2424084 2424084 1 + C T LGG 2424079 + 2424059 2424099 41 CCCTCACCCCCGTCAGGCCTCCTCCCAGCCACGGTGCAGCC CCCTCACCCCCGTCAGGCCTCCTCCTAGCCACGGTGCAGCC < 41bp 1 0.0621224035417725 1 0.0526239573955536 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSSC4 ENSG00000184281 CDS Human protein_coding chr11:2424079 chr11:2424084 nonsynonymous SNV 0.000 0 26 hm5C_associated_SNPs_25088 0 0 1 0 1 TSSC4 chr11:2424075 3'AG 2424075 Downstream 10bp
chr3 108353774 108353774 1 + C T LGG 108353763 + 108353743 108353783 41 AAAGTTGCTGTGTTTATTTCCATAAAATTTGCTGGAAAAAG AAAGTTGCTGTGTTTATTTCCATAAAATTTGTTGGAAAAAG < 41bp 1 0.181282506325386 1 0.57391232252121 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108353763 chr3:108353774 synonymous SNV . 0 32 hm5C_associated_SNPs_25090 0 0 1 0 1 DZIP3 chr3:108353819 5'GT 108353819 Upstream 46bp
chr12 112321472 112321472 1 + A G LGG 112321465 + 112321445 112321485 41 TTTTACTCCAAACACCACAGCCGGACTATCCCAAAGGATAT TTTTACTCCAAACACCACAGCCGGACTGTCCCAAAGGATAT < 41bp 1 0.40518433592504 1 0.108679860830307 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPKAPK5 ENSG00000089022 CDS Human protein_coding chr12:112321465 chr12:112321472 nonsynonymous SNV 0.999 2 28 hm5C_associated_SNPs_25091 0 0 1 0 1 MAPKAPK5 chr12:112321385 3'AG 112321385 Downstream 88bp
chr12 112321472 112321472 1 + A G LGG 112321470 + 112321450 112321490 41 CTCCAAACACCACAGCCGGACTATCCCAAAGGATATGCGAA CTCCAAACACCACAGCCGGACTGTCCCAAAGGATATGCGAA < 41bp 1 0.0637582976248679 1 0.0739153921604156 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPKAPK5 ENSG00000089022 CDS Human protein_coding chr12:112321470 chr12:112321472 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_25092 0 0 1 0 1 MAPKAPK5 chr12:112321385 3'AG 112321385 Downstream 88bp
chr1 55072901 55072901 1 + G A LGG 55072914 + 55072894 55072934 41 GGACTTCGTGATCCTGGCCTCGAGGCGGAAGCCTTGTGACA GGACTTCATGATCCTGGCCTCGAGGCGGAAGCCTTGTGACA < 41bp 1 0.680455117534769 1 0.87581729888916 experiment 0.639089764930461 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55072914 chr1:55072901 nonsynonymous SNV 0.997 5 8 hm5C_associated_SNPs_25093 0 0 0 0 2 ACOT11 chr1:55072807 3'AG 55072807 Downstream 95bp
chr1 55072901 55072901 1 + G A LGG 55072914 + 55072894 55072934 41 GGACTTCGTGATCCTGGCCTCGAGGCGGAAGCCTTGTGACA GGACTTCATGATCCTGGCCTCGAGGCGGAAGCCTTGTGACA < 41bp 1 0.680455117534769 1 0.87581729888916 experiment 0.639089764930461 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55072914 chr1:55072901 nonsynonymous SNV 0.997 5 8 hm5C_associated_SNPs_25093 0 0 0 0 2 ACOT11 chr1:55072938 5'GT 55072938 Upstream 38bp
chrX 24545692 24545692 1 + A T LGG 24545707 + 24545687 24545727 41 TTAGAACTCAATGAGAGCGACAGTTGAACTCTATGAAGACA TTAGATCTCAATGAGAGCGACAGTTGAACTCTATGAAGACA < 41bp 1 0.0536349723862703 1 0.373997569084167 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK3 ENSG00000067992 CDS Human protein_coding chrX:24545707 chrX:24545692 nonsynonymous SNV 1.000 5 6 hm5C_associated_SNPs_25094 0 0 1 0 1 PDK3 chrX:24545691 3'AG 24545691 Downstream 2bp
chr2 173366600 173366600 1 + A T LGG 173366597 + 173366577 173366617 41 TGATAAAGAGAGGCTTACTTCTGATGCATAGTATTGATCTA TGATAAAGAGAGGCTTACTTCTGTTGCATAGTATTGATCTA < 41bp 1 0.312840768907993 1 0.581994831562042 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITGA6 ENSG00000091409 CDS Human antisense chr2:173366597 chr2:173366600 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_25095 0 0 0 0 1 ITGA6 chr2:173366629 5'GT 173366629 Upstream 30bp
chr8 121468835 121468835 1 + A G LGG 121468848 + 121468828 121468868 41 ATGTTGTATCTTTAGAAGATCTCAGAAATGTTATTGACTCA ATGTTGTGTCTTTAGAAGATCTCAGAAATGTTATTGACTCA < 41bp 1 0.397687680225343 1 0.261404603719711 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTBP ENSG00000172167 CDS Human protein_coding chr8:121468848 chr8:121468835 synonymous SNV . 0 8 hm5C_associated_SNPs_25096 0 0 1 0 2 MTBP chr8:121468793 3'AG 121468793 Downstream 43bp
chr8 121468835 121468835 1 + A G LGG 121468848 + 121468828 121468868 41 ATGTTGTATCTTTAGAAGATCTCAGAAATGTTATTGACTCA ATGTTGTGTCTTTAGAAGATCTCAGAAATGTTATTGACTCA < 41bp 1 0.397687680225343 1 0.261404603719711 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTBP ENSG00000172167 CDS Human protein_coding chr8:121468848 chr8:121468835 synonymous SNV . 0 8 hm5C_associated_SNPs_25096 0 0 1 0 2 MTBP chr8:121468910 5'GT 121468910 Upstream 76bp
chr8 17794714 17794714 1 + T C LGG 17794729 + 17794709 17794749 41 GAAAGTGATAAAAGAGTAACCAATGATATTTCTCCGGAGTC GAAAGCGATAAAAGAGTAACCAATGATATTTCTCCGGAGTC < 41bp 1 0.328998314840918 1 0.426050424575806 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCM1 ENSG00000078674 CDS Human protein_coding chr8:17794729 chr8:17794714 synonymous SNV . 0 6 hm5C_associated_SNPs_25097 0 0 1 0 1 PCM1 chr8:17794643 3'AG 17794643 Downstream 72bp
chr17 73695883 73695883 1 + C T LGG 73695888 + 73695868 73695908 41 TTTTCTGAAAGAGTTCGGAACATGTCGCCTGATGAAATCAA TTTTCTGAAAGAGTTTGGAACATGTCGCCTGATGAAATCAA < 41bp 1 0.174630835671994 1 0.201193958520889 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695888 chr17:73695883 nonsynonymous SNV 0.995 1 16 hm5C_associated_SNPs_25098 0 0 1 0 2 SAP30BP chr17:73695863 3'AG 73695863 Downstream 21bp
chr17 73695883 73695883 1 + C T LGG 73695888 + 73695868 73695908 41 TTTTCTGAAAGAGTTCGGAACATGTCGCCTGATGAAATCAA TTTTCTGAAAGAGTTTGGAACATGTCGCCTGATGAAATCAA < 41bp 1 0.174630835671994 1 0.201193958520889 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695888 chr17:73695883 nonsynonymous SNV 0.995 1 16 hm5C_associated_SNPs_25098 0 0 1 0 2 SAP30BP chr17:73695951 5'GT 73695951 Upstream 69bp
chr17 73695883 73695883 1 + C T LGG 73695893 + 73695873 73695913 41 TGAAAGAGTTCGGAACATGTCGCCTGATGAAATCAAGATCC TGAAAGAGTTTGGAACATGTCGCCTGATGAAATCAAGATCC < 41bp 1 0.726148935001069 1 0.346409797668457 experiment 0.547702129997863 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695893 chr17:73695883 nonsynonymous SNV 0.995 1 11 hm5C_associated_SNPs_25099 0 0 1 0 2 SAP30BP chr17:73695863 3'AG 73695863 Downstream 21bp
chr17 73695883 73695883 1 + C T LGG 73695893 + 73695873 73695913 41 TGAAAGAGTTCGGAACATGTCGCCTGATGAAATCAAGATCC TGAAAGAGTTTGGAACATGTCGCCTGATGAAATCAAGATCC < 41bp 1 0.726148935001069 1 0.346409797668457 experiment 0.547702129997863 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695893 chr17:73695883 nonsynonymous SNV 0.995 1 11 hm5C_associated_SNPs_25099 0 0 1 0 2 SAP30BP chr17:73695951 5'GT 73695951 Upstream 69bp
chr17 73695883 73695883 1 + C T LGG 73695896 + 73695876 73695916 41 AAGAGTTCGGAACATGTCGCCTGATGAAATCAAGATCCCGC AAGAGTTTGGAACATGTCGCCTGATGAAATCAAGATCCCGC < 41bp 1 0.370187350327417 1 0.232450217008591 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695896 chr17:73695883 nonsynonymous SNV 0.995 1 8 hm5C_associated_SNPs_25100 0 0 1 0 2 SAP30BP chr17:73695863 3'AG 73695863 Downstream 21bp
chr17 73695883 73695883 1 + C T LGG 73695896 + 73695876 73695916 41 AAGAGTTCGGAACATGTCGCCTGATGAAATCAAGATCCCGC AAGAGTTTGGAACATGTCGCCTGATGAAATCAAGATCCCGC < 41bp 1 0.370187350327417 1 0.232450217008591 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695896 chr17:73695883 nonsynonymous SNV 0.995 1 8 hm5C_associated_SNPs_25100 0 0 1 0 2 SAP30BP chr17:73695951 5'GT 73695951 Upstream 69bp
chr4 1206203 1206203 1 - G A LGG 1206214 - 1206194 1206234 41 ACGGATGGACCCTCTCCCAGCAGGTACCCTCCGGGCGTGGT ACGGATGGACCCTCTCCCAGCAGGTACCCTCTGGGCGTGGT < 41bp 1 0.62062579612734 1 0.835670471191406 experiment 0.758748407745319 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTBP1 ENSG00000159692 CDS Human protein_coding chr4:1206214 chr4:1206203 nonsynonymous SNV 0.001 3 32 hm5C_associated_SNPs_25101 0 0 1 0 2 CTBP1 chr4:1206211 3'AG 1206211 Downstream 9bp
chr4 1206203 1206203 1 - G A LGG 1206214 - 1206194 1206234 41 ACGGATGGACCCTCTCCCAGCAGGTACCCTCCGGGCGTGGT ACGGATGGACCCTCTCCCAGCAGGTACCCTCTGGGCGTGGT < 41bp 1 0.62062579612734 1 0.835670471191406 experiment 0.758748407745319 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTBP1 ENSG00000159692 CDS Human protein_coding chr4:1206214 chr4:1206203 nonsynonymous SNV 0.001 3 32 hm5C_associated_SNPs_25101 0 0 1 0 2 CTBP1-AS chr4:1206214 3'AG 1206214 Downstream 12bp
chr14 100367314 100367314 1 + C G LGG 100367316 + 100367296 100367336 41 TCTGTGACATTGAATACTCTCCACGTCATTGGAATAGGTTT TCTGTGACATTGAATACTGTCCACGTCATTGGAATAGGTTT < 41bp 1 0.190884770238209 1 0.188995242118835 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EML1 ENSG00000066629 CDS Human protein_coding chr14:100367316 chr14:100367314 nonsynonymous SNV 0.986 4 19 hm5C_associated_SNPs_25102 0 0 1 0 2 EML1 chr14:100367266 3'AG 100367266 Downstream 49bp
chr14 100367314 100367314 1 + C G LGG 100367316 + 100367296 100367336 41 TCTGTGACATTGAATACTCTCCACGTCATTGGAATAGGTTT TCTGTGACATTGAATACTGTCCACGTCATTGGAATAGGTTT < 41bp 1 0.190884770238209 1 0.188995242118835 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EML1 ENSG00000066629 CDS Human protein_coding chr14:100367316 chr14:100367314 nonsynonymous SNV 0.986 4 19 hm5C_associated_SNPs_25102 0 0 1 0 2 EML1 chr14:100367376 5'GT 100367376 Upstream 63bp
chr7 43591856 43591856 1 + C T LGG 43591843 + 43591823 43591863 41 TGTAGACTCGAGGCTGGTGTCCGTGTTTGATGCCAGGGAGC TGTAGACTCGAGGCTGGTGTCCGTGTTTGATGCTAGGGAGC < 41bp 1 0.170036835503474 1 0.337831079959869 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43591843 chr7:43591856 synonymous SNV . 0 34 hm5C_associated_SNPs_25103 0 0 0 0 2 HECW1 chr7:43591821 3'AG 43591821 Downstream 36bp
chr7 43591856 43591856 1 + C T LGG 43591843 + 43591823 43591863 41 TGTAGACTCGAGGCTGGTGTCCGTGTTTGATGCCAGGGAGC TGTAGACTCGAGGCTGGTGTCCGTGTTTGATGCTAGGGAGC < 41bp 1 0.170036835503474 1 0.337831079959869 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43591843 chr7:43591856 synonymous SNV . 0 34 hm5C_associated_SNPs_25103 0 0 0 0 2 HECW1 chr7:43591935 5'GT 43591935 Upstream 80bp
chr20 330364 330364 1 + G A LGG 330383 + 330363 330403 41 CGCTCCTACCTGCACCTCTTCTATGAGGACTGTGCAGGCAC CACTCCTACCTGCACCTCTTCTATGAGGACTGTGCAGGCAC < 41bp 1 0.318871234550255 1 0.058598518371582 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NRSN2 ENSG00000125841 CDS Human protein_coding chr20:330383 chr20:330364 nonsynonymous SNV 0.973 2 2 hm5C_associated_SNPs_25104 0 0 1 0 1 NRSN2 chr20:330282 3'AG 330282 Downstream 83bp
chr2 233674460 233674460 1 + C T LGG 233674441 + 233674421 233674461 41 CATTCCTAGGGAGAGCTGGACCAGGAACGACTGACCAGGCA CATTCCTAGGGAGAGCTGGACCAGGAACGACTGACCAGGTA < 41bp 1 0.276996482618197 1 0.189390569925308 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233674441 chr2:233674460 stopgain 0.994 1 40 hm5C_associated_SNPs_25105 0 0 1 0 2 GIGYF2 chr2:233674430 3'AG 233674430 Downstream 31bp
chr2 233674460 233674460 1 + C T LGG 233674441 + 233674421 233674461 41 CATTCCTAGGGAGAGCTGGACCAGGAACGACTGACCAGGCA CATTCCTAGGGAGAGCTGGACCAGGAACGACTGACCAGGTA < 41bp 1 0.276996482618197 1 0.189390569925308 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233674441 chr2:233674460 stopgain 0.994 1 40 hm5C_associated_SNPs_25105 0 0 1 0 2 GIGYF2 chr2:233674521 5'GT 233674521 Upstream 62bp
chr3 39431997 39431997 1 + C T LGG 39431995 + 39431975 39432015 41 GGCCTTTGGAAAGGGATGTCCCCTGTAAGCTGCCATCTGGG GGCCTTTGGAAAGGGATGTCCCTTGTAAGCTGCCATCTGGG < 41bp 1 0.11226945940314 1 0.0601194500923157 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431995 chr3:39431997 nonsynonymous SNV 0.984 5 23 hm5C_associated_SNPs_25106 0 0 1 0 2 SLC25A38 chr3:39431914 3'AG 39431914 Downstream 84bp
chr3 39431997 39431997 1 + C T LGG 39431995 + 39431975 39432015 41 GGCCTTTGGAAAGGGATGTCCCCTGTAAGCTGCCATCTGGG GGCCTTTGGAAAGGGATGTCCCTTGTAAGCTGCCATCTGGG < 41bp 1 0.11226945940314 1 0.0601194500923157 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431995 chr3:39431997 nonsynonymous SNV 0.984 5 23 hm5C_associated_SNPs_25106 0 0 1 0 2 SLC25A38 chr3:39431998 5'GT 39431998 Upstream 2bp
chr8 28906544 28906544 1 + C T LGG 28906525 + 28906505 28906545 41 GCAGAGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACG GCAGAGTCCAGGAGGCCACTCAAACAGTGATGATGTCGATG < 41bp 1 0.271943756841824 1 0.116386562585831 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906525 chr8:28906544 synonymous SNV . 0 40 hm5C_associated_SNPs_25108 0 0 1 0 4 HMBOX1 chr8:28906471 3'AG 28906471 Downstream 74bp
chr8 28906544 28906544 1 + C T LGG 28906525 + 28906505 28906545 41 GCAGAGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACG GCAGAGTCCAGGAGGCCACTCAAACAGTGATGATGTCGATG < 41bp 1 0.271943756841824 1 0.116386562585831 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906525 chr8:28906544 synonymous SNV . 0 40 hm5C_associated_SNPs_25108 0 0 1 0 4 HMBOX1 chr8:28906474 3'AG 28906474 Downstream 71bp
chr8 28906544 28906544 1 + C T LGG 28906525 + 28906505 28906545 41 GCAGAGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACG GCAGAGTCCAGGAGGCCACTCAAACAGTGATGATGTCGATG < 41bp 1 0.271943756841824 1 0.116386562585831 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906525 chr8:28906544 synonymous SNV . 0 40 hm5C_associated_SNPs_25108 0 0 1 0 4 HMBOX1 chr8:28906477 3'AG 28906477 Downstream 68bp
chr8 28906544 28906544 1 + C T LGG 28906525 + 28906505 28906545 41 GCAGAGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACG GCAGAGTCCAGGAGGCCACTCAAACAGTGATGATGTCGATG < 41bp 1 0.271943756841824 1 0.116386562585831 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906525 chr8:28906544 synonymous SNV . 0 40 hm5C_associated_SNPs_25108 0 0 1 0 4 HMBOX1 chr8:28906565 5'GT 28906565 Upstream 22bp
chr8 28906544 28906544 1 + C T LGG 28906529 + 28906509 28906549 41 AGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACGGGAA AGTCCAGGAGGCCACTCAAACAGTGATGATGTCGATGGGAA < 41bp 1 0.706572629898118 1 0.566939651966095 experiment 0.586854740203765 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906529 chr8:28906544 synonymous SNV . 0 36 hm5C_associated_SNPs_25109 0 0 1 0 4 HMBOX1 chr8:28906471 3'AG 28906471 Downstream 74bp
chr8 28906544 28906544 1 + C T LGG 28906529 + 28906509 28906549 41 AGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACGGGAA AGTCCAGGAGGCCACTCAAACAGTGATGATGTCGATGGGAA < 41bp 1 0.706572629898118 1 0.566939651966095 experiment 0.586854740203765 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906529 chr8:28906544 synonymous SNV . 0 36 hm5C_associated_SNPs_25109 0 0 1 0 4 HMBOX1 chr8:28906474 3'AG 28906474 Downstream 71bp
chr8 28906544 28906544 1 + C T LGG 28906529 + 28906509 28906549 41 AGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACGGGAA AGTCCAGGAGGCCACTCAAACAGTGATGATGTCGATGGGAA < 41bp 1 0.706572629898118 1 0.566939651966095 experiment 0.586854740203765 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906529 chr8:28906544 synonymous SNV . 0 36 hm5C_associated_SNPs_25109 0 0 1 0 4 HMBOX1 chr8:28906477 3'AG 28906477 Downstream 68bp
chr8 28906544 28906544 1 + C T LGG 28906529 + 28906509 28906549 41 AGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACGGGAA AGTCCAGGAGGCCACTCAAACAGTGATGATGTCGATGGGAA < 41bp 1 0.706572629898118 1 0.566939651966095 experiment 0.586854740203765 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906529 chr8:28906544 synonymous SNV . 0 36 hm5C_associated_SNPs_25109 0 0 1 0 4 HMBOX1 chr8:28906565 5'GT 28906565 Upstream 22bp
chr8 28906544 28906544 1 + C T LGG 28906541 + 28906521 28906561 41 CACTCAAACAGTGATGATGTCGACGGGAATGACTACTCTGA CACTCAAACAGTGATGATGTCGATGGGAATGACTACTCTGA < 41bp 1 0.558069090958307 1 0.314869523048401 experiment 0.883861818083386 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906541 chr8:28906544 synonymous SNV . 0 24 hm5C_associated_SNPs_25110 0 0 1 0 4 HMBOX1 chr8:28906471 3'AG 28906471 Downstream 74bp
chr8 28906544 28906544 1 + C T LGG 28906541 + 28906521 28906561 41 CACTCAAACAGTGATGATGTCGACGGGAATGACTACTCTGA CACTCAAACAGTGATGATGTCGATGGGAATGACTACTCTGA < 41bp 1 0.558069090958307 1 0.314869523048401 experiment 0.883861818083386 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906541 chr8:28906544 synonymous SNV . 0 24 hm5C_associated_SNPs_25110 0 0 1 0 4 HMBOX1 chr8:28906474 3'AG 28906474 Downstream 71bp
chr8 28906544 28906544 1 + C T LGG 28906541 + 28906521 28906561 41 CACTCAAACAGTGATGATGTCGACGGGAATGACTACTCTGA CACTCAAACAGTGATGATGTCGATGGGAATGACTACTCTGA < 41bp 1 0.558069090958307 1 0.314869523048401 experiment 0.883861818083386 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906541 chr8:28906544 synonymous SNV . 0 24 hm5C_associated_SNPs_25110 0 0 1 0 4 HMBOX1 chr8:28906477 3'AG 28906477 Downstream 68bp
chr8 28906544 28906544 1 + C T LGG 28906541 + 28906521 28906561 41 CACTCAAACAGTGATGATGTCGACGGGAATGACTACTCTGA CACTCAAACAGTGATGATGTCGATGGGAATGACTACTCTGA < 41bp 1 0.558069090958307 1 0.314869523048401 experiment 0.883861818083386 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906541 chr8:28906544 synonymous SNV . 0 24 hm5C_associated_SNPs_25110 0 0 1 0 4 HMBOX1 chr8:28906565 5'GT 28906565 Upstream 22bp
chr8 28906544 28906544 1 + C T LGG 28906553 + 28906533 28906573 41 GATGATGTCGACGGGAATGACTACTCTGAGCAGGTGAGCCC GATGATGTCGATGGGAATGACTACTCTGAGCAGGTGAGCCC < 41bp 1 0.623631884217859 1 0.178116083145142 experiment 0.752736231564281 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906553 chr8:28906544 synonymous SNV . 0 12 hm5C_associated_SNPs_25111 0 0 1 0 4 HMBOX1 chr8:28906471 3'AG 28906471 Downstream 74bp
chr8 28906544 28906544 1 + C T LGG 28906553 + 28906533 28906573 41 GATGATGTCGACGGGAATGACTACTCTGAGCAGGTGAGCCC GATGATGTCGATGGGAATGACTACTCTGAGCAGGTGAGCCC < 41bp 1 0.623631884217859 1 0.178116083145142 experiment 0.752736231564281 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906553 chr8:28906544 synonymous SNV . 0 12 hm5C_associated_SNPs_25111 0 0 1 0 4 HMBOX1 chr8:28906474 3'AG 28906474 Downstream 71bp
chr8 28906544 28906544 1 + C T LGG 28906553 + 28906533 28906573 41 GATGATGTCGACGGGAATGACTACTCTGAGCAGGTGAGCCC GATGATGTCGATGGGAATGACTACTCTGAGCAGGTGAGCCC < 41bp 1 0.623631884217859 1 0.178116083145142 experiment 0.752736231564281 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906553 chr8:28906544 synonymous SNV . 0 12 hm5C_associated_SNPs_25111 0 0 1 0 4 HMBOX1 chr8:28906477 3'AG 28906477 Downstream 68bp
chr8 28906544 28906544 1 + C T LGG 28906553 + 28906533 28906573 41 GATGATGTCGACGGGAATGACTACTCTGAGCAGGTGAGCCC GATGATGTCGATGGGAATGACTACTCTGAGCAGGTGAGCCC < 41bp 1 0.623631884217859 1 0.178116083145142 experiment 0.752736231564281 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906553 chr8:28906544 synonymous SNV . 0 12 hm5C_associated_SNPs_25111 0 0 1 0 4 HMBOX1 chr8:28906565 5'GT 28906565 Upstream 22bp
chr12 125603203 125603203 1 + G A LGG 125603189 + 125603169 125603209 41 TCCCTCCTGTCTTTGCAGGTCGGCTGGATGATGTGGAACTG TCCCTCCTGTCTTTGCAGGTCGGCTGGATGATGTAGAACTG < 41bp 1 0.543848476307905 1 0.651950061321259 experiment 0.912303047384191 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AACS ENSG00000081760 CDS Human protein_coding chr12:125603189 chr12:125603203 stopgain 1.000 1 35 hm5C_associated_SNPs_25112 0 0 0 0 1 AACS chr12:125603187 3'AG 125603187 Downstream 17bp
chr12 125603203 125603203 1 + G A LGG 125603220 + 125603200 125603240 41 TGTGGAACTGGATGGTGTCCCTTCTGGCCACAGGAGCGGCC TGTAGAACTGGATGGTGTCCCTTCTGGCCACAGGAGCGGCC < 41bp 1 0.306876749271409 1 0.123573511838913 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AACS ENSG00000081760 CDS Human protein_coding chr12:125603220 chr12:125603203 stopgain 1.000 1 4 hm5C_associated_SNPs_25113 0 0 0 0 1 AACS chr12:125603187 3'AG 125603187 Downstream 17bp
chr1 26772898 26772898 1 + G A LGG 26772901 + 26772881 26772921 41 AGCTGATTGCACAAGCTGTACAGGCCACGAAGAACTACAAC AGCTGATTGCACAAGCTATACAGGCCACGAAGAACTACAAC < 41bp 1 0.501425696487407 1 0.640365958213806 experiment 0.997148607025186 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26772901 chr1:26772898 nonsynonymous SNV 0.921 0 18 hm5C_associated_SNPs_25114 0 0 1 0 2 DHDDS chr1:26772807 3'AG 26772807 Downstream 92bp
chr1 26772898 26772898 1 + G A LGG 26772901 + 26772881 26772921 41 AGCTGATTGCACAAGCTGTACAGGCCACGAAGAACTACAAC AGCTGATTGCACAAGCTATACAGGCCACGAAGAACTACAAC < 41bp 1 0.501425696487407 1 0.640365958213806 experiment 0.997148607025186 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26772901 chr1:26772898 nonsynonymous SNV 0.921 0 18 hm5C_associated_SNPs_25114 0 0 1 0 2 DHDDS chr1:26772923 5'GT 26772923 Upstream 26bp
chr1 26772898 26772898 1 + G A LGG 26772908 + 26772888 26772928 41 TGCACAAGCTGTACAGGCCACGAAGAACTACAACAAGTAAG TGCACAAGCTATACAGGCCACGAAGAACTACAACAAGTAAG < 41bp 1 0.261154904703521 1 0.444241017103195 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26772908 chr1:26772898 nonsynonymous SNV 0.921 0 11 hm5C_associated_SNPs_25115 0 0 1 0 2 DHDDS chr1:26772807 3'AG 26772807 Downstream 92bp
chr1 26772898 26772898 1 + G A LGG 26772908 + 26772888 26772928 41 TGCACAAGCTGTACAGGCCACGAAGAACTACAACAAGTAAG TGCACAAGCTATACAGGCCACGAAGAACTACAACAAGTAAG < 41bp 1 0.261154904703521 1 0.444241017103195 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26772908 chr1:26772898 nonsynonymous SNV 0.921 0 11 hm5C_associated_SNPs_25115 0 0 1 0 2 DHDDS chr1:26772923 5'GT 26772923 Upstream 26bp
chr22 39382395 39382395 1 + C T LGG 39382388 + 39382368 39382408 41 TTCGATGAAAATTATGCATTCCTGCACCGCACGCTAAAGGA TTCGATGAAAATTATGCATTCCTGCACTGCACGCTAAAGGA < 41bp 1 0.0625820666182268 1 0.108186632394791 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control APOBEC3B ENSG00000179750 CDS Human protein_coding chr22:39382388 chr22:39382395 nonsynonymous SNV 0.000 0 28 hm5C_associated_SNPs_25116 0 0 0 1 2 APOBEC3B chr22:39382303 3'AG 39382303 Downstream 93bp
chr22 39382395 39382395 1 + C T LGG 39382388 + 39382368 39382408 41 TTCGATGAAAATTATGCATTCCTGCACCGCACGCTAAAGGA TTCGATGAAAATTATGCATTCCTGCACTGCACGCTAAAGGA < 41bp 1 0.0625820666182268 1 0.108186632394791 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control APOBEC3B ENSG00000179750 CDS Human protein_coding chr22:39382388 chr22:39382395 nonsynonymous SNV 0.000 0 28 hm5C_associated_SNPs_25116 0 0 0 1 2 APOBEC3B chr22:39382417 5'GT 39382417 Upstream 23bp
chr11 33628229 33628229 1 + A G LGG 33628214 + 33628194 33628234 41 GAGTGACGAAGAGGAGGGAGCGGTTCTATTTGACAACTCCA GAGTGACGAAGAGGAGGGAGCGGTTCTATTTGACAGCTCCA < 41bp 1 0.122088947530234 1 0.219332814216614 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33628214 chr11:33628229 nonsynonymous SNV 0.323 0 36 hm5C_associated_SNPs_25117 0 0 0 0 1 KIAA1549L chr11:33628187 3'AG 33628187 Downstream 43bp
chr9 137708918 137708918 1 + G A LGG 137708906 + 137708886 137708926 41 TACTGGTGAACCAGGTCCATCGGGGCCTCCAGGAAAAAGGG TACTGGTGAACCAGGTCCATCGGGGCCTCCAGAAAAAAGGG < 41bp 1 0.324274941725392 1 0.844732940196991 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137708906 chr9:137708918 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_25122 0 0 0 0 1 COL5A1 chr9:137708872 3'AG 137708872 Downstream 47bp
chr11 111835363 111835363 1 + C T LGG 111835377 + 111835357 111835397 41 GATCTCCGGGATGGGGTGATCCTGGCATATCTCATCGAGAT GATCTCTGGGATGGGGTGATCCTGGCATATCTCATCGAGAT < 41bp 1 0.444861243538977 1 0.391280651092529 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111835377 chr11:111835363 nonsynonymous SNV 0.998 4 7 hm5C_associated_SNPs_25123 0 0 1 0 2 DIXDC1 chr11:111835273 3'AG 111835273 Downstream 91bp
chr11 111835363 111835363 1 + C T LGG 111835377 + 111835357 111835397 41 GATCTCCGGGATGGGGTGATCCTGGCATATCTCATCGAGAT GATCTCTGGGATGGGGTGATCCTGGCATATCTCATCGAGAT < 41bp 1 0.444861243538977 1 0.391280651092529 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111835377 chr11:111835363 nonsynonymous SNV 0.998 4 7 hm5C_associated_SNPs_25123 0 0 1 0 2 DIXDC1 chr11:111835402 5'GT 111835402 Upstream 40bp
chr17 14095349 14095349 1 + G C LGG 14095330 + 14095310 14095350 41 TTGCTAGCTGTGTCCTTTGCCACTTGTTGTGCTGTTCCGGG TTGCTAGCTGTGTCCTTTGCCACTTGTTGTGCTGTTCCGCG < 41bp 1 0.350265373508065 1 0.878211736679077 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control COX10 ENSG00000006695 CDS Human protein_coding chr17:14095330 chr17:14095349 nonsynonymous SNV 0.725 5 40 hm5C_associated_SNPs_25125 0 0 1 0 1 COX10 chr17:14095306 3'AG 14095306 Downstream 44bp
chr5 54654435 54654435 1 + G A LGG 54654434 + 54654414 54654454 41 AATACATTCAGATGTCTGGTCGTGCTGGAAGGAGAGGAATG AATACATTCAGATGTCTGGTCATGCTGGAAGGAGAGGAATG < 41bp 1 0.180805525191863 1 0.0550134778022766 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54654434 chr5:54654435 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_25126 0 0 1 0 2 SKIV2L2 chr5:54654401 3'AG 54654401 Downstream 35bp
chr5 54654435 54654435 1 + G A LGG 54654434 + 54654414 54654454 41 AATACATTCAGATGTCTGGTCGTGCTGGAAGGAGAGGAATG AATACATTCAGATGTCTGGTCATGCTGGAAGGAGAGGAATG < 41bp 1 0.180805525191863 1 0.0550134778022766 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54654434 chr5:54654435 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_25126 0 0 1 0 2 SKIV2L2 chr5:54654526 5'GT 54654526 Upstream 92bp
chr7 73731911 73731911 1 + G A LGG 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AAGCCCAGCGGCCTGAAGCCCCCCGGCCATGGGGGGAAGCA < 41bp 1 0.238116492024289 1 0.176288574934006 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731911 nonsynonymous SNV 0.952 4 29 hm5C_associated_SNPs_25127 0 0 0 0 1 CLIP2 chr7:73731997 5'GT 73731997 Upstream 87bp
chr7 73731911 73731911 1 + G A LGG 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC AGCCCAGCGGCCTGAAGCCCCCCGGCCATGGGGGGAAGCAC < 41bp 1 0.387204747886265 1 0.170654267072678 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731911 nonsynonymous SNV 0.952 4 28 hm5C_associated_SNPs_25128 0 0 0 0 1 CLIP2 chr7:73731997 5'GT 73731997 Upstream 87bp
chr7 73731911 73731911 1 + G A LGG 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT GCCCAGCGGCCTGAAGCCCCCCGGCCATGGGGGGAAGCACT < 41bp 1 0.167312530174922 1 0.660367369651794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731911 nonsynonymous SNV 0.952 4 27 hm5C_associated_SNPs_25129 0 0 0 0 1 CLIP2 chr7:73731997 5'GT 73731997 Upstream 87bp
chr7 73731911 73731911 1 + G A LGG 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC CCCAGCGGCCTGAAGCCCCCCGGCCATGGGGGGAAGCACTC < 41bp 1 0.31955168942729 1 0.410618305206299 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731911 nonsynonymous SNV 0.952 4 26 hm5C_associated_SNPs_25130 0 0 0 0 1 CLIP2 chr7:73731997 5'GT 73731997 Upstream 87bp
chr7 131128404 131128404 1 + T C LGG 131128390 + 131128370 131128410 41 GTCAAACCTGGAAACTTCTTCGAGAGGACTCCTGTAATGCT GTCAAACCTGGAAACTTCTTCGAGAGGACTCCTGCAATGCT < 41bp 1 0.744823642867412 1 0.727968573570251 experiment 0.510352714265177 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MKLN1 ENSG00000128585 CDS Human protein_coding chr7:131128390 chr7:131128404 synonymous SNV . 0 35 hm5C_associated_SNPs_25131 0 0 1 0 1 MKLN1 chr7:131128461 5'GT 131128461 Upstream 58bp
chr21 17250117 17250117 1 + A G LGG 17250131 + 17250111 17250151 41 TAAGAAATTAAATGAGCAAGCCGCAGAACTCTTCGAATCTG TAAGAAGTTAAATGAGCAAGCCGCAGAACTCTTCGAATCTG < 41bp 1 0.491802562524476 1 0.331871449947357 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP25 ENSG00000155313 CDS Human protein_coding chr21:17250131 chr21:17250117 synonymous SNV . 0 7 hm5C_associated_SNPs_25132 0 0 1 0 1 USP25 chr21:17250115 3'AG 17250115 Downstream 3bp
chr1 46295175 46295175 1 + G A LGG 46295193 + 46295173 46295213 41 TCGTCAGGAGAAGCATCAAACCTGGTTCGAATGAGAAACCA TCATCAGGAGAAGCATCAAACCTGGTTCGAATGAGAAACCA < 41bp 1 0.31139499478214 1 0.219194740056992 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAST2 ENSG00000086015 CDS Human protein_coding chr1:46295193 chr1:46295175 synonymous SNV . 0 3 hm5C_associated_SNPs_25134 0 0 1 0 2 MAST2 chr1:46295111 3'AG 46295111 Downstream 65bp
chr1 46295175 46295175 1 + G A LGG 46295193 + 46295173 46295213 41 TCGTCAGGAGAAGCATCAAACCTGGTTCGAATGAGAAACCA TCATCAGGAGAAGCATCAAACCTGGTTCGAATGAGAAACCA < 41bp 1 0.31139499478214 1 0.219194740056992 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAST2 ENSG00000086015 CDS Human protein_coding chr1:46295193 chr1:46295175 synonymous SNV . 0 3 hm5C_associated_SNPs_25134 0 0 1 0 2 MAST2 chr1:46295253 5'GT 46295253 Upstream 79bp
chr22 38258980 38258980 1 + G A LGG 38258983 + 38258963 38259003 41 GTTTTCTTTACAGGGGGGACCTTCCTTGGAGCAGAGGTTTG GTTTTCTTTACAGGGGGAACCTTCCTTGGAGCAGAGGTTTG < 41bp 1 0.100843687617255 1 0.376787066459656 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF3L ENSG00000100129 CDS Human protein_coding chr22:38258983 chr22:38258980 nonsynonymous SNV 0.992 2 18 hm5C_associated_SNPs_25135 0 0 1 0 2 EIF3L chr22:38258976 3'AG 38258976 Downstream 5bp
chr22 38258980 38258980 1 + G A LGG 38258983 + 38258963 38259003 41 GTTTTCTTTACAGGGGGGACCTTCCTTGGAGCAGAGGTTTG GTTTTCTTTACAGGGGGAACCTTCCTTGGAGCAGAGGTTTG < 41bp 1 0.100843687617255 1 0.376787066459656 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF3L ENSG00000100129 CDS Human protein_coding chr22:38258983 chr22:38258980 nonsynonymous SNV 0.992 2 18 hm5C_associated_SNPs_25135 0 0 1 0 2 EIF3L chr22:38259045 5'GT 38259045 Upstream 66bp
chr19 36572456 36572456 1 + A T LGG 36572466 + 36572446 36572486 41 CACTGGCAGAAAAACATCTTCAGCAATGTGAGTGGCTTCCT CACTGGCAGATAAACATCTTCAGCAATGTGAGTGGCTTCCT < 41bp 1 0.543731982137214 1 0.291470855474472 experiment 0.912536035725572 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36572466 chr19:36572456 nonsynonymous SNV 0.977 3 11 hm5C_associated_SNPs_25136 0 0 1 0 1 WDR62 chr19:36572472 5'GT 36572472 Upstream 17bp
chr17 25937180 25937180 1 + G A LGG 25937195 + 25937175 25937215 41 GACGAGGATCAGCTGCCATTCTCCAAAGCTGCTGATGTCTA GACGAAGATCAGCTGCCATTCTCCAAAGCTGCTGATGTCTA < 41bp 1 0.784966844248631 1 0.9765704870224 experiment 0.430066311502737 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control KSR1 ENSG00000141068 CDS Human protein_coding chr17:25937195 chr17:25937180 synonymous SNV . 0 6 hm5C_associated_SNPs_25137 0 0 1 0 2 KSR1 chr17:25937093 3'AG 25937093 Downstream 88bp
chr17 25937180 25937180 1 + G A LGG 25937195 + 25937175 25937215 41 GACGAGGATCAGCTGCCATTCTCCAAAGCTGCTGATGTCTA GACGAAGATCAGCTGCCATTCTCCAAAGCTGCTGATGTCTA < 41bp 1 0.784966844248631 1 0.9765704870224 experiment 0.430066311502737 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control KSR1 ENSG00000141068 CDS Human protein_coding chr17:25937195 chr17:25937180 synonymous SNV . 0 6 hm5C_associated_SNPs_25137 0 0 1 0 2 KSR1 chr17:25937224 5'GT 25937224 Upstream 45bp
chr9 101778341 101778341 1 + T C LGG 101778357 + 101778337 101778377 41 GCCCTCCCCCTGATGGGCCACCGCTGCCCCTGCCCACAGTG GCCCCCCCCCTGATGGGCCACCGCTGCCCCTGCCCACAGTG < 41bp 1 0.161289321249918 1 0.0749030113220215 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101778357 chr9:101778341 synonymous SNV . 0 5 hm5C_associated_SNPs_25139 0 0 0 0 1 COL15A1 chr9:101778401 5'GT 101778401 Upstream 61bp
chr5 131940537 131940537 1 + A G LGG 131940539 + 131940519 131940559 41 ATCGTAAGCTTATACAGGACCAGCAGGAACAGATTCAACAT ATCGTAAGCTTATACAGGGCCAGCAGGAACAGATTCAACAT < 41bp 1 0.647152134308749 1 0.273990511894226 experiment 0.705695731382502 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131940539 chr5:131940537 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_25141 0 0 1 0 1 RAD50 chr5:131940498 3'AG 131940498 Downstream 40bp
chr3 111705808 111705808 1 + A C LGG 111705815 + 111705795 111705835 41 TGCTTCATGCTGCAATTGCACGACCAGAGAAGGTCGTGGCT TGCTTCATGCTGCCATTGCACGACCAGAGAAGGTCGTGGCT < 41bp 1 0.540285062612974 1 0.143828630447388 experiment 0.919429874774053 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111705815 chr3:111705808 synonymous SNV . 0 14 hm5C_associated_SNPs_25151 0 0 0 0 2 ABHD10 chr3:111705761 3'AG 111705761 Downstream 48bp
chr3 111705808 111705808 1 + A C LGG 111705815 + 111705795 111705835 41 TGCTTCATGCTGCAATTGCACGACCAGAGAAGGTCGTGGCT TGCTTCATGCTGCCATTGCACGACCAGAGAAGGTCGTGGCT < 41bp 1 0.540285062612974 1 0.143828630447388 experiment 0.919429874774053 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111705815 chr3:111705808 synonymous SNV . 0 14 hm5C_associated_SNPs_25151 0 0 0 0 2 ABHD10 chr3:111705898 5'GT 111705898 Upstream 91bp
chr11 67046685 67046685 1 + C G LGG 67046676 + 67046656 67046696 41 CACTGTTGCCTTCAGGGTACCTGCTCTTCCGAGACTTCTGC CACTGTTGCCTTCAGGGTACCTGCTCTTCGGAGACTTCTGC < 41bp 1 0.206878153396236 1 0.0697354972362518 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67046676 chr11:67046685 nonsynonymous SNV 0.999 2 30 hm5C_associated_SNPs_25153 0 0 1 0 1 GRK2 chr11:67046744 5'GT 67046744 Upstream 60bp
chr12 57911132 57911132 1 + C T LGG 57911135 + 57911115 57911155 41 CAGGTCCTCATACCAGGCTTCCAGCTCCCAGCTGGACAGTG CAGGTCCTCATACCAGGTTTCCAGCTCCCAGCTGGACAGTG < 41bp 1 0.179768348380145 1 0.0485608279705048 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDIT3 ENSG00000175197 CDS Human protein_coding chr12:57911135 chr12:57911132 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_25154 0 0 0 0 1 DDIT3 chr12:57911066 3'AG 57911066 Downstream 67bp
chr12 57911132 57911132 1 + C T LGG 57911139 + 57911119 57911159 41 TCCTCATACCAGGCTTCCAGCTCCCAGCTGGACAGTGTCCC TCCTCATACCAGGTTTCCAGCTCCCAGCTGGACAGTGTCCC < 41bp 1 0.292459456493367 1 0.0949421226978302 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDIT3 ENSG00000175197 CDS Human protein_coding chr12:57911139 chr12:57911132 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_25155 0 0 0 0 1 DDIT3 chr12:57911066 3'AG 57911066 Downstream 67bp
chr10 102112184 102112184 1 + C T LGG 102112188 + 102112168 102112208 41 CTCATCGTCTGTGGAGCCACCGCTCTTACAAAGCTCGGCTG CTCATCGTCTGTGGAGTCACCGCTCTTACAAAGCTCGGCTG < 41bp 1 0.441756228714331 1 0.537870049476624 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCD ENSG00000099194 CDS Human protein_coding chr10:102112188 chr10:102112184 synonymous SNV . 0 17 hm5C_associated_SNPs_25156 0 0 1 0 2 SCD chr10:102112123 3'AG 102112123 Downstream 62bp
chr10 102112184 102112184 1 + C T LGG 102112188 + 102112168 102112208 41 CTCATCGTCTGTGGAGCCACCGCTCTTACAAAGCTCGGCTG CTCATCGTCTGTGGAGTCACCGCTCTTACAAAGCTCGGCTG < 41bp 1 0.441756228714331 1 0.537870049476624 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCD ENSG00000099194 CDS Human protein_coding chr10:102112188 chr10:102112184 synonymous SNV . 0 17 hm5C_associated_SNPs_25156 0 0 1 0 2 SCD chr10:102112253 5'GT 102112253 Upstream 70bp
chr9 132482974 132482974 1 + G A LGG 132482973 + 132482953 132482993 41 AAGTCCTACAGCCAGGAGGCCGCCATCGAGCAGCCCGTGGC AAGTCCTACAGCCAGGAGGCCACCATCGAGCAGCCCGTGGC < 41bp 1 0.611449939773158 1 0.35648450255394 experiment 0.777100120453685 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRX2 ENSG00000167157 CDS Human protein_coding chr9:132482973 chr9:132482974 nonsynonymous SNV 0.988 3 22 hm5C_associated_SNPs_25157 0 0 0 0 2 PRRX2 chr9:132482875 3'AG 132482875 Downstream 100bp
chr9 132482974 132482974 1 + G A LGG 132482973 + 132482953 132482993 41 AAGTCCTACAGCCAGGAGGCCGCCATCGAGCAGCCCGTGGC AAGTCCTACAGCCAGGAGGCCACCATCGAGCAGCCCGTGGC < 41bp 1 0.611449939773158 1 0.35648450255394 experiment 0.777100120453685 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRX2 ENSG00000167157 CDS Human protein_coding chr9:132482973 chr9:132482974 nonsynonymous SNV 0.988 3 22 hm5C_associated_SNPs_25157 0 0 0 0 2 PRRX2 chr9:132483053 5'GT 132483053 Upstream 80bp
chr11 68204389 68204389 1 + A G LGG 68204395 + 68204375 68204415 41 AGTTCCGGTGTGCGAGCGGCCAGTGTGTCCTCATCAAACAG AGTTCCGGTGTGCGGGCGGCCAGTGTGTCCTCATCAAACAG < 41bp 1 0.403053060286013 1 0.509385764598846 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204395 chr11:68204389 nonsynonymous SNV 0.981 2 15 hm5C_associated_SNPs_25158 0 0 0 0 2 LRP5 chr11:68204357 3'AG 68204357 Downstream 33bp
chr11 68204389 68204389 1 + A G LGG 68204395 + 68204375 68204415 41 AGTTCCGGTGTGCGAGCGGCCAGTGTGTCCTCATCAAACAG AGTTCCGGTGTGCGGGCGGCCAGTGTGTCCTCATCAAACAG < 41bp 1 0.403053060286013 1 0.509385764598846 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204395 chr11:68204389 nonsynonymous SNV 0.981 2 15 hm5C_associated_SNPs_25158 0 0 0 0 2 LRP5 chr11:68204467 5'GT 68204467 Upstream 79bp
chr5 169127065 169127065 1 + C T LGG 169127059 + 169127039 169127079 41 TGCTGGTGGGTGACATCATTCAGATTCGCAAGGACTATCCA TGCTGGTGGGTGACATCATTCAGATTTGCAAGGACTATCCA < 41bp 1 0.508868268271802 1 0.748930275440216 experiment 0.982263463456396 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169127059 chr5:169127065 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_25159 0 0 1 0 2 DOCK2 chr5:169127018 3'AG 169127018 Downstream 48bp
chr5 169127065 169127065 1 + C T LGG 169127059 + 169127039 169127079 41 TGCTGGTGGGTGACATCATTCAGATTCGCAAGGACTATCCA TGCTGGTGGGTGACATCATTCAGATTTGCAAGGACTATCCA < 41bp 1 0.508868268271802 1 0.748930275440216 experiment 0.982263463456396 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169127059 chr5:169127065 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_25159 0 0 1 0 2 DOCK2 chr5:169127143 5'GT 169127143 Upstream 79bp
chr6 145149966 145149966 1 + G C LGG 145149979 + 145149959 145149999 41 TCTCACTGATAGCAGCTCCACCACAGGAAGTGTGTAAGTAA TCTCACTCATAGCAGCTCCACCACAGGAAGTGTGTAAGTAA < 41bp 1 0.109151809972124 1 0.110531508922577 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:145149979 chr6:145149966 nonsynonymous SNV 0.908 3 8 hm5C_associated_SNPs_25161 0 0 1 0 2 UTRN chr6:145149926 3'AG 145149926 Downstream 41bp
chr6 145149966 145149966 1 + G C LGG 145149979 + 145149959 145149999 41 TCTCACTGATAGCAGCTCCACCACAGGAAGTGTGTAAGTAA TCTCACTCATAGCAGCTCCACCACAGGAAGTGTGTAAGTAA < 41bp 1 0.109151809972124 1 0.110531508922577 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:145149979 chr6:145149966 nonsynonymous SNV 0.908 3 8 hm5C_associated_SNPs_25161 0 0 1 0 2 UTRN chr6:145149991 5'GT 145149991 Upstream 26bp
chr16 1889339 1889339 1 - G A LGG 1889321 - 1889301 1889341 41 TGCTGATTGATCTGACTGATCACACAGGCACCCTTCATTCC TGTTGATTGATCTGACTGATCACACAGGCACCCTTCATTCC < 41bp 1 0.554898005606882 1 0.043267548084259 experiment 0.890203988786235 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MEIOB ENSG00000162039 CDS Human protein_coding chr16:1889321 chr16:1889339 synonymous SNV . 0 3 hm5C_associated_SNPs_25162 0 0 1 0 1 MEIOB chr16:1889256 5'GT 1889256 Upstream 84bp
chr16 1889339 1889339 1 + G A LGG 1889342 + 1889322 1889362 41 ATCAGTCAGATCAATCAGCACATGGAAACTGAGAAAGACAG ATCAGTCAGATCAATCAACACATGGAAACTGAGAAAGACAG < 41bp 1 0.620523720057697 1 0.169712781906128 experiment 0.758952559884607 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MEIOB ENSG00000162039 CDS Human other chr16:1889342 chr16:1889339 synonymous SNV . 0 18 hm5C_associated_SNPs_25163 0 0 0 1 1 FAHD1;MEIOB chr16:1889263 3'AG 1889263 Downstream 77bp
chr14 93043731 93043731 1 + C T LGG 93043725 + 93043705 93043745 41 ATGTTCCTGGTTCGCCGGGACAGCAGCTCGAAGCAGCTGGT ATGTTCCTGGTTCGCCGGGACAGCAGTTCGAAGCAGCTGGT < 41bp 1 0.547824251788448 1 0.344885408878326 experiment 0.904351496423105 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93043725 chr14:93043731 synonymous SNV . 0 27 hm5C_associated_SNPs_25164 0 0 0 0 2 RIN3 chr14:93043705 3'AG 93043705 Downstream 27bp
chr14 93043731 93043731 1 + C T LGG 93043725 + 93043705 93043745 41 ATGTTCCTGGTTCGCCGGGACAGCAGCTCGAAGCAGCTGGT ATGTTCCTGGTTCGCCGGGACAGCAGTTCGAAGCAGCTGGT < 41bp 1 0.547824251788448 1 0.344885408878326 experiment 0.904351496423105 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93043725 chr14:93043731 synonymous SNV . 0 27 hm5C_associated_SNPs_25164 0 0 0 0 2 RIN3 chr14:93043822 5'GT 93043822 Upstream 92bp
chr12 112926291 112926291 1 + T G LGG 112926274 + 112926254 112926294 41 ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTTAT ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCGTAT < 41bp 1 0.174759143713642 1 0.0197249054908752 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926274 chr12:112926291 nonsynonymous SNV 1.000 5 38 hm5C_associated_SNPs_25165 0 0 0 0 2 PTPN11 chr12:112926247 3'AG 112926247 Downstream 45bp
chr12 112926291 112926291 1 + T G LGG 112926274 + 112926254 112926294 41 ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTTAT ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCGTAT < 41bp 1 0.174759143713642 1 0.0197249054908752 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926274 chr12:112926291 nonsynonymous SNV 1.000 5 38 hm5C_associated_SNPs_25165 0 0 0 0 2 PTPN11 chr12:112926314 5'GT 112926314 Upstream 24bp
chr17 73814838 73814838 1 + G A LGG 73814827 + 73814807 73814847 41 CCTAGCCCAGTGGGCACCAGCAGCGTCCCCGGCATGAATGC CCTAGCCCAGTGGGCACCAGCAGCGTCCCCGACATGAATGC < 41bp 1 0.718861443427853 1 0.468862056732178 experiment 0.562277113144293 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73814827 chr17:73814838 nonsynonymous SNV 0.997 3 32 hm5C_associated_SNPs_25167 0 0 0 0 1 UNK chr17:73814897 5'GT 73814897 Upstream 60bp
chr17 73814838 73814838 1 + G A LGG 73814851 + 73814831 73814871 41 GTCCCCGGCATGAATGCAAACGCTCTGCCCTTCTACCCCAC GTCCCCGACATGAATGCAAACGCTCTGCCCTTCTACCCCAC < 41bp 1 0.332189761071166 1 0.175079256296158 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73814851 chr17:73814838 nonsynonymous SNV 0.997 3 8 hm5C_associated_SNPs_25168 0 0 0 0 1 UNK chr17:73814897 5'GT 73814897 Upstream 60bp
chr20 1905410 1905410 1 + A G LGG 1905422 + 1905402 1905442 41 GTCCCTAGAGAACACTGGATCTAATGAACGGAACATCTATA GTCCCTAGGGAACACTGGATCTAATGAACGGAACATCTATA < 41bp 1 0.187535995982361 1 0.0595219135284424 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1905422 chr20:1905410 nonsynonymous SNV 0.061 0 9 hm5C_associated_SNPs_25170 0 0 0 0 1 SIRPA chr20:1905410 3'AG 1905410 Downstream 1bp
chrX 205505 205505 1 + G A LGG 205500 + 205480 205520 41 AACAAGGCCTTGCCCTGCATCACGCGCCCTGTCGTGCTGAA AACAAGGCCTTGCCCTGCATCACGCACCCTGTCGTGCTGAA < 41bp 1 0.404111170650568 1 0.0755820274353027 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:205500 chrX:205505 nonsynonymous SNV 0.006 0 26 hm5C_associated_SNPs_25171 0 0 1 0 1 PLCXD1 chrX:205536 5'GT 205536 Upstream 32bp
chr15 41105573 41105573 1 + C T LGG 41105590 + 41105570 41105610 41 TGACGACGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGC TGATGACGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGC < 41bp 1 0.478370740556238 1 0.119620770215988 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105590 chr15:41105573 synonymous SNV . 0 4 hm5C_associated_SNPs_25174 0 0 0 0 2 ZFYVE19 chr15:41105536 3'AG 41105536 Downstream 38bp
chr15 41105573 41105573 1 + C T LGG 41105590 + 41105570 41105610 41 TGACGACGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGC TGATGACGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGC < 41bp 1 0.478370740556238 1 0.119620770215988 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105590 chr15:41105573 synonymous SNV . 0 4 hm5C_associated_SNPs_25174 0 0 0 0 2 ZFYVE19 chr15:41105615 5'GT 41105615 Upstream 43bp
chr2 135180442 135180442 1 + C G LGG 135180429 + 135180409 135180449 41 CGGGCGGCCACATGTGTGGACTGTTGACCTCAACAATCAGG CGGGCGGCCACATGTGTGGACTGTTGACCTCAAGAATCAGG < 41bp 1 0.0674613006995411 1 0.0212928950786591 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135180429 chr2:135180442 nonsynonymous SNV 0.978 1 34 hm5C_associated_SNPs_25175 0 0 1 0 2 MGAT5 chr2:135180374 3'AG 135180374 Downstream 69bp
chr2 135180442 135180442 1 + C G LGG 135180429 + 135180409 135180449 41 CGGGCGGCCACATGTGTGGACTGTTGACCTCAACAATCAGG CGGGCGGCCACATGTGTGGACTGTTGACCTCAAGAATCAGG < 41bp 1 0.0674613006995411 1 0.0212928950786591 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135180429 chr2:135180442 nonsynonymous SNV 0.978 1 34 hm5C_associated_SNPs_25175 0 0 1 0 2 MGAT5 chr2:135180490 5'GT 135180490 Upstream 49bp
chr1 92495797 92495797 1 + C T LGG 92495811 + 92495791 92495831 41 GGCGGCCCGCCCGGGAGCACCCTCCCGCGTGCCTGAGCGAC GGCGGCTCGCCCGGGAGCACCCTCCCGCGTGCCTGAGCGAC < 41bp 1 0.280702826363768 1 0.350677311420441 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPHX4 ENSG00000172031 CDS Human protein_coding chr1:92495811 chr1:92495797 nonsynonymous SNV 0.270 0 7 hm5C_associated_SNPs_25176 0 0 0 0 1 EPHX4 chr1:92495867 5'GT 92495867 Upstream 71bp
chrX 153608123 153608123 1 + C T LGG 153608138 + 153608118 153608158 41 CCCAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA CCCAGTTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA < 41bp 1 0.414443541482344 1 0.154465675354004 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608138 chrX:153608123 synonymous SNV . 0 6 hm5C_associated_SNPs_25177 0 0 1 0 2 EMD chrX:153608050 3'AG 153608050 Downstream 74bp
chrX 153608123 153608123 1 + C T LGG 153608138 + 153608118 153608158 41 CCCAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA CCCAGTTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA < 41bp 1 0.414443541482344 1 0.154465675354004 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608138 chrX:153608123 synonymous SNV . 0 6 hm5C_associated_SNPs_25177 0 0 1 0 2 EMD chrX:153608154 5'GT 153608154 Upstream 32bp
chrX 153608123 153608123 1 + C T LGG 153608140 + 153608120 153608160 41 CAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGAGA CAGTTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGAGA < 41bp 1 0.228703760920449 1 0.104846775531769 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608140 chrX:153608123 synonymous SNV . 0 4 hm5C_associated_SNPs_25178 0 0 1 0 2 EMD chrX:153608050 3'AG 153608050 Downstream 74bp
chrX 153608123 153608123 1 + C T LGG 153608140 + 153608120 153608160 41 CAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGAGA CAGTTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGAGA < 41bp 1 0.228703760920449 1 0.104846775531769 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608140 chrX:153608123 synonymous SNV . 0 4 hm5C_associated_SNPs_25178 0 0 1 0 2 EMD chrX:153608154 5'GT 153608154 Upstream 32bp
chr15 40509802 40509802 1 + C T LGG 40509796 + 40509776 40509816 41 GTGCAGCTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGT GTGCAGCTGGATGTTTTTACCCTCAGTGGCTTTCGGACTGT < 41bp 1 0.414596631448073 1 0.0950810015201569 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BUB1B ENSG00000156970;ENSG00000259288 CDS Human other chr15:40509796 chr15:40509802 synonymous SNV . 0 27 hm5C_associated_SNPs_25179 0 0 1 0 1 BUB1B chr15:40509868 5'GT 40509868 Upstream 67bp
chr19 39664275 39664275 1 + G C LGG 39664261 + 39664241 39664281 41 ACGGGCCATCAGCGGGGGGCCTGGCCATCCCCCAGTCCTCC ACGGGCCATCAGCGGGGGGCCTGGCCATCCCCCACTCCTCC < 41bp 1 0.546679265231361 1 0.0569327473640442 experiment 0.906641469537279 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAK4 ENSG00000130669 CDS Human protein_coding chr19:39664261 chr19:39664275 nonsynonymous SNV 0.864 2 35 hm5C_associated_SNPs_25180 0 0 0 0 1 PAK4 chr19:39664216 3'AG 39664216 Downstream 60bp
chr5 159344767 159344767 1 + G T LGG 159344770 + 159344750 159344790 41 GCTGTCAAACTTTTTAAGTTCTCCAGGGAAAAGAAAGCAGC GCTGTCAAACTTTTTAATTTCTCCAGGGAAAAGAAAGCAGC < 41bp 1 0.684345474277922 1 0.935559093952179 experiment 0.631309051444155 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout ADRA1B ENSG00000170214 CDS Human protein_coding chr5:159344770 chr5:159344767 nonsynonymous SNV 1.000 5 18 hm5C_associated_SNPs_25183 0 0 0 0 1 ADRA1B chr5:159344861 5'GT 159344861 Upstream 95bp
chr1 145368516 145368516 1 + G A LGG 145368536 + 145368516 145368556 41 GTCAATGTACTTTGAACTACCTGACTCATTCCAGCACTACA ATCAATGTACTTTGAACTACCTGACTCATTCCAGCACTACA < 41bp 1 0.0738867423731023 1 0.112791299819946 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBPF9 ENSG00000163386 CDS Human other chr1:145368536 chr1:145368516 synonymous SNV . 0 1 hm5C_associated_SNPs_25184 0 0 0 0 1 NBPF9 chr1:145368441 3'AG 145368441 Downstream 76bp
chr1 235543460 235543460 1 + G C LGG 235543456 + 235543436 235543476 41 TTTTGCTGGTGTTGTCCCTCCCGTGGCAGGTAAGCAATTAT TTTTGCTGGTGTTGTCCCTCCCGTCGCAGGTAAGCAATTAT < 41bp 1 0.0584049547139048 1 0.472266525030136 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235543456 chr1:235543460 synonymous SNV . 0 25 hm5C_associated_SNPs_25185 0 0 1 0 1 TBCE chr1:235543464 5'GT 235543464 Upstream 5bp
chr8 25181376 25181376 1 + C T LGG 25181381 + 25181361 25181401 41 CAGCCAGAGATAAATCGGAGCGAGCATTTGGGGTGGCCTTC CAGCCAGAGATAAATTGGAGCGAGCATTTGGGGTGGCCTTC < 41bp 1 0.180217995711311 1 0.493649005889893 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25181381 chr8:25181376 nonsynonymous SNV 0.968 3 16 hm5C_associated_SNPs_25187 0 0 1 1 3 DOCK5 chr8:25181364 3'AG 25181364 Downstream 13bp
chr8 25181376 25181376 1 + C T LGG 25181381 + 25181361 25181401 41 CAGCCAGAGATAAATCGGAGCGAGCATTTGGGGTGGCCTTC CAGCCAGAGATAAATTGGAGCGAGCATTTGGGGTGGCCTTC < 41bp 1 0.180217995711311 1 0.493649005889893 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25181381 chr8:25181376 nonsynonymous SNV 0.968 3 16 hm5C_associated_SNPs_25187 0 0 1 1 3 DOCK5 chr8:25181368 3'AG 25181368 Downstream 9bp
chr8 25181376 25181376 1 + C T LGG 25181381 + 25181361 25181401 41 CAGCCAGAGATAAATCGGAGCGAGCATTTGGGGTGGCCTTC CAGCCAGAGATAAATTGGAGCGAGCATTTGGGGTGGCCTTC < 41bp 1 0.180217995711311 1 0.493649005889893 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25181381 chr8:25181376 nonsynonymous SNV 0.968 3 16 hm5C_associated_SNPs_25187 0 0 1 1 3 DOCK5 chr8:25181467 5'GT 25181467 Upstream 92bp
chr2 113322007 113322007 1 + C T LGG 113321998 + 113321978 113322018 41 TACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGT TACAGTGAGTGCTACCCTGTCCTGCTGGATGGTGTCATGGT < 41bp 1 0.124977824475563 1 0.138773441314697 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113321998 chr2:113322007 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_25195 0 0 1 0 2 POLR1B chr2:113321943 3'AG 113321943 Downstream 65bp
chr2 113322007 113322007 1 + C T LGG 113321998 + 113321978 113322018 41 TACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGT TACAGTGAGTGCTACCCTGTCCTGCTGGATGGTGTCATGGT < 41bp 1 0.124977824475563 1 0.138773441314697 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113321998 chr2:113322007 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_25195 0 0 1 0 2 POLR1B chr2:113322076 5'GT 113322076 Upstream 70bp
chr2 113322007 113322007 1 + C T LGG 113321999 + 113321979 113322019 41 ACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGTT ACAGTGAGTGCTACCCTGTCCTGCTGGATGGTGTCATGGTT < 41bp 1 0.629126046800462 1 0.167360931634903 experiment 0.741747906399076 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113321999 chr2:113322007 nonsynonymous SNV . 0 29 hm5C_associated_SNPs_25196 0 0 1 0 2 POLR1B chr2:113321943 3'AG 113321943 Downstream 65bp
chr2 113322007 113322007 1 + C T LGG 113321999 + 113321979 113322019 41 ACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGTT ACAGTGAGTGCTACCCTGTCCTGCTGGATGGTGTCATGGTT < 41bp 1 0.629126046800462 1 0.167360931634903 experiment 0.741747906399076 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113321999 chr2:113322007 nonsynonymous SNV . 0 29 hm5C_associated_SNPs_25196 0 0 1 0 2 POLR1B chr2:113322076 5'GT 113322076 Upstream 70bp
chr1 82372829 82372829 1 + G A LGG 82372824 + 82372804 82372844 41 TTGAGAGCGCTAACTATGGTCGGACGGATGACAAGATTTGT TTGAGAGCGCTAACTATGGTCGGACAGATGACAAGATTTGT < 41bp 1 0.211724365097434 1 0.279855221509933 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRL2 ENSG00000117114 CDS Human protein_coding chr1:82372824 chr1:82372829 synonymous SNV . 0 26 hm5C_associated_SNPs_25197 0 0 1 0 1 ADGRL2 chr1:82372915 5'GT 82372915 Upstream 87bp
chr10 105184818 105184818 1 + G A LGG 105184825 + 105184805 105184845 41 CCTTGGTAGAGACGGGCCACCTGGCAGCTTTCTCCCTGACC CCTTGGTAGAGACAGGCCACCTGGCAGCTTTCTCCCTGACC < 41bp 1 0.309666463168934 1 0.215901106595993 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105184825 chr10:105184818 synonymous SNV . 0 14 hm5C_associated_SNPs_25199 0 0 1 0 1 PDCD11 chr10:105184741 3'AG 105184741 Downstream 78bp
chr19 4222733 4222733 1 + G A LGG 4222718 + 4222698 4222738 41 TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCGCCACC TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCACCACC < 41bp 1 0.274191153245761 1 0.326056778430939 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4222718 chr19:4222733 nonsynonymous SNV 0.001 0 36 hm5C_associated_SNPs_25200 0 0 0 0 2 ANKRD24 chr19:4222667 3'AG 4222667 Downstream 67bp
chr19 4222733 4222733 1 + G A LGG 4222718 + 4222698 4222738 41 TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCGCCACC TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCACCACC < 41bp 1 0.274191153245761 1 0.326056778430939 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4222718 chr19:4222733 nonsynonymous SNV 0.001 0 36 hm5C_associated_SNPs_25200 0 0 0 0 2 ANKRD24 chr19:4222792 5'GT 4222792 Upstream 60bp
chr17 7214424 7214424 1 + A T LGG 7214415 + 7214395 7214435 41 CAACTCATAATATGGATGTCCCCAACATCAAAAGGAATGAC CAACTCATAATATGGATGTCCCCAACATCTAAAGGAATGAC < 41bp 1 0.21170309557125 1 0.120298236608505 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214415 chr17:7214424 stopgain 1.000 1 30 hm5C_associated_SNPs_25201 0 0 1 0 2 EIF5A chr17:7214337 3'AG 7214337 Downstream 88bp
chr17 7214424 7214424 1 + A T LGG 7214415 + 7214395 7214435 41 CAACTCATAATATGGATGTCCCCAACATCAAAAGGAATGAC CAACTCATAATATGGATGTCCCCAACATCTAAAGGAATGAC < 41bp 1 0.21170309557125 1 0.120298236608505 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214415 chr17:7214424 stopgain 1.000 1 30 hm5C_associated_SNPs_25201 0 0 1 0 2 EIF5A chr17:7214441 5'GT 7214441 Upstream 18bp
chr17 7214424 7214424 1 + A T LGG 7214416 + 7214396 7214436 41 AACTCATAATATGGATGTCCCCAACATCAAAAGGAATGACT AACTCATAATATGGATGTCCCCAACATCTAAAGGAATGACT < 41bp 1 0.0454228624604959 1 0.109131962060928 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214416 chr17:7214424 stopgain 1.000 1 29 hm5C_associated_SNPs_25202 0 0 1 0 2 EIF5A chr17:7214337 3'AG 7214337 Downstream 88bp
chr17 7214424 7214424 1 + A T LGG 7214416 + 7214396 7214436 41 AACTCATAATATGGATGTCCCCAACATCAAAAGGAATGACT AACTCATAATATGGATGTCCCCAACATCTAAAGGAATGACT < 41bp 1 0.0454228624604959 1 0.109131962060928 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214416 chr17:7214424 stopgain 1.000 1 29 hm5C_associated_SNPs_25202 0 0 1 0 2 EIF5A chr17:7214441 5'GT 7214441 Upstream 18bp
chr11 118885707 118885707 1 + C G LGG 118885708 + 118885688 118885728 41 TTAATTTTTTTTTCAGGTGCCACACCTCCCTGGATGATCCA TTAATTTTTTTTTCAGGTGGCACACCTCCCTGGATGATCCA < 41bp 1 0.0577136624859311 1 0.0465313792228699 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118885708 chr11:118885707 nonsynonymous SNV 0.992 4 20 hm5C_associated_SNPs_25208 0 0 1 1 2 CCDC84 chr11:118885704 3'AG 118885704 Downstream 4bp
chr11 118885707 118885707 1 + C G LGG 118885708 + 118885688 118885728 41 TTAATTTTTTTTTCAGGTGCCACACCTCCCTGGATGATCCA TTAATTTTTTTTTCAGGTGGCACACCTCCCTGGATGATCCA < 41bp 1 0.0577136624859311 1 0.0465313792228699 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118885708 chr11:118885707 nonsynonymous SNV 0.992 4 20 hm5C_associated_SNPs_25208 0 0 1 1 2 CCDC84 chr11:118885793 5'GT 118885793 Upstream 87bp
chr13 103299660 103299660 1 + G C LGG 103299672 + 103299652 103299692 41 GAACAAAAGACAGATGGGTTCAGGCGATGCCTATCCACATC GAACAAAACACAGATGGGTTCAGGCGATGCCTATCCACATC < 41bp 1 0.636497640911475 1 0.698014616966248 experiment 0.72700471817705 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPP2 ENSG00000134900 CDS Human protein_coding chr13:103299672 chr13:103299660 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_25209 0 0 1 0 1 TPP2 chr13:103299694 5'GT 103299694 Upstream 35bp
chr2 160053205 160053205 1 + T C LGG 160053224 + 160053204 160053244 41 CTTGTGAGTGGTCGCCGGGTCCTCCCCAGCCAGGCACCCTG CCTGTGAGTGGTCGCCGGGTCCTCCCCAGCCAGGCACCCTG < 41bp 1 0.0857326199023774 1 0.0434888899326324 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160053224 chr2:160053205 synonymous SNV . 0 2 hm5C_associated_SNPs_25210 0 0 1 0 2 TANC1 chr2:160053119 3'AG 160053119 Downstream 87bp
chr2 160053205 160053205 1 + T C LGG 160053224 + 160053204 160053244 41 CTTGTGAGTGGTCGCCGGGTCCTCCCCAGCCAGGCACCCTG CCTGTGAGTGGTCGCCGGGTCCTCCCCAGCCAGGCACCCTG < 41bp 1 0.0857326199023774 1 0.0434888899326324 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160053224 chr2:160053205 synonymous SNV . 0 2 hm5C_associated_SNPs_25210 0 0 1 0 2 TANC1 chr2:160053304 5'GT 160053304 Upstream 100bp
chr7 101891755 101891755 1 + C T LGG 101891757 + 101891737 101891777 41 GAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGCCC GAGTCAGGGCCAGGCGGGTGCCAGCGACTCACCCTCGGCCC < 41bp 1 0.322318017957702 1 0.394334614276886 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891757 chr7:101891755 synonymous SNV . 0 19 hm5C_associated_SNPs_25212 0 0 1 0 1 CUX1 chr7:101891692 3'AG 101891692 Downstream 64bp
chr7 101891755 101891755 1 + C T LGG 101891758 + 101891738 101891778 41 AGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGCCCG AGTCAGGGCCAGGCGGGTGCCAGCGACTCACCCTCGGCCCG < 41bp 1 0.761694433977044 1 0.827725052833557 experiment 0.476611132045911 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891758 chr7:101891755 synonymous SNV . 0 18 hm5C_associated_SNPs_25213 0 0 1 0 1 CUX1 chr7:101891692 3'AG 101891692 Downstream 64bp
chrX 153627882 153627882 1 + T G LGG 153627896 + 153627876 153627916 41 ATGAGTTTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT ATGAGTGTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT < 41bp 1 0.307237257244806 1 0.451980650424957 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627896 chrX:153627882 nonsynonymous SNV 0.948 3 7 hm5C_associated_SNPs_25215 0 0 1 0 2 RPL10 chrX:153627828 3'AG 153627828 Downstream 55bp
chrX 153627882 153627882 1 + T G LGG 153627896 + 153627876 153627916 41 ATGAGTTTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT ATGAGTGTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT < 41bp 1 0.307237257244806 1 0.451980650424957 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627896 chrX:153627882 nonsynonymous SNV 0.948 3 7 hm5C_associated_SNPs_25215 0 0 1 0 2 RPL10 chrX:153627935 5'GT 153627935 Upstream 54bp
chr2 171822309 171822309 1 + C A LGG 171822305 + 171822285 171822325 41 CCGTTTTTGTCCTAGGTCTGCCACCTCTTCCTTCCATGCCT CCGTTTTTGTCCTAGGTCTGCCACATCTTCCTTCCATGCCT < 41bp 1 0.468973234860766 1 0.120403081178665 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171822305 chr2:171822309 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_25216 0 0 1 0 1 GORASP2 chr2:171822300 3'AG 171822300 Downstream 10bp
chr5 54640973 54640973 1 + G A LGG 54640986 + 54640966 54641006 41 TCGAGATGCAGGTGATTTGGCCAAAGGAGACCAGAAAGGGC TCGAGATACAGGTGATTTGGCCAAAGGAGACCAGAAAGGGC < 41bp 1 0.489682781766038 1 0.541500568389893 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54640986 chr5:54640973 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_25217 0 0 1 0 1 SKIV2L2 chr5:54641024 5'GT 54641024 Upstream 52bp
chr1 203819731 203819731 1 + C T LGG 203819733 + 203819713 203819753 41 TAAGGCAGTGGAGATGCACGCTGCTGTCATTGCCGCTGTGA TAAGGCAGTGGAGATGCATGCTGCTGTCATTGCCGCTGTGA < 41bp 1 0.699203674719282 1 0.294724971055984 experiment 0.601592650561436 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203819733 chr1:203819731 synonymous SNV . 0 19 hm5C_associated_SNPs_25218 0 0 1 0 2 ZC3H11A chr1:203819643 3'AG 203819643 Downstream 89bp
chr1 203819731 203819731 1 + C T LGG 203819733 + 203819713 203819753 41 TAAGGCAGTGGAGATGCACGCTGCTGTCATTGCCGCTGTGA TAAGGCAGTGGAGATGCATGCTGCTGTCATTGCCGCTGTGA < 41bp 1 0.699203674719282 1 0.294724971055984 experiment 0.601592650561436 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203819733 chr1:203819731 synonymous SNV . 0 19 hm5C_associated_SNPs_25218 0 0 1 0 2 ZC3H11A chr1:203819809 5'GT 203819809 Upstream 79bp
chr20 30822373 30822373 1 + C A LGG 30822376 + 30822356 30822396 41 CTGTGTCTCCTCCTTCACTGCCTTTGTGAAGCGGGAGCGGG CTGTGTCTCCTCCTTCAATGCCTTTGTGAAGCGGGAGCGGG < 41bp 1 0.0681135910159545 1 0.0548115074634552 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POFUT1 ENSG00000101346 CDS Human protein_coding chr20:30822376 chr20:30822373 nonsynonymous SNV 0.992 3 18 hm5C_associated_SNPs_25219 0 0 1 0 1 POFUT1 chr20:30822276 3'AG 30822276 Downstream 98bp
chr8 67369316 67369316 1 + T G LGG 67369308 + 67369288 67369328 41 ATTTCGTTTCTCCCCAGCCCCATGGCCTTTCTGTGGTGCTC ATTTCGTTTCTCCCCAGCCCCATGGCCTGTCTGTGGTGCTC < 41bp 1 0.524300534188477 1 0.454606711864471 experiment 0.951398931623047 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control ADHFE1 ENSG00000147576 CDS Human protein_coding chr8:67369308 chr8:67369316 synonymous SNV . 0 29 hm5C_associated_SNPs_25220 0 0 0 4 2 ADHFE1 chr8:67369305 3'AG 67369305 Downstream 12bp
chr8 67369316 67369316 1 + T G LGG 67369308 + 67369288 67369328 41 ATTTCGTTTCTCCCCAGCCCCATGGCCTTTCTGTGGTGCTC ATTTCGTTTCTCCCCAGCCCCATGGCCTGTCTGTGGTGCTC < 41bp 1 0.524300534188477 1 0.454606711864471 experiment 0.951398931623047 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control ADHFE1 ENSG00000147576 CDS Human protein_coding chr8:67369308 chr8:67369316 synonymous SNV . 0 29 hm5C_associated_SNPs_25220 0 0 0 4 2 ADHFE1 chr8:67369401 5'GT 67369401 Upstream 86bp
chr9 134021675 134021675 1 + C A LGG 134021668 + 134021648 134021688 41 TAGTTCCGTGCCATTGAAGTCCTCAGTCTTGCCCTCACCAT TAGTTCCGTGCCATTGAAGTCCTCAGTATTGCCCTCACCAT < 41bp 1 0.248926367205159 1 0.101429998874664 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NUP214 ENSG00000126883 CDS Human protein_coding chr9:134021668 chr9:134021675 synonymous SNV . 0 28 hm5C_associated_SNPs_25221 0 0 0 0 1 NUP214 chr9:134021691 5'GT 134021691 Upstream 17bp
chrX 41027339 41027339 1 + G A LGG 41027349 + 41027329 41027369 41 GTTTTGGATGGTGACAAAGACAGTGTTAATTGTGCAAGACA GTTTTGGATGATGACAAAGACAGTGTTAATTGTGCAAGACA < 41bp 1 0.280769381706425 1 0.259939134120941 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41027349 chrX:41027339 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_25222 0 0 1 0 1 USP9X chrX:41027260 3'AG 41027260 Downstream 80bp
chr12 57599408 57599408 1 + C A LGG 57599390 + 57599370 57599410 41 TGCTCCCAGCTCTGCAACAACACCAAGGGCGGCCACCTCTG TGCTCCCAGCTCTGCAACAACACCAAGGGCGGCCACCTATG < 41bp 1 0.354170383015463 1 0.190923482179642 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599390 chr12:57599408 synonymous SNV . 0 39 hm5C_associated_SNPs_25224 0 0 0 0 2 LRP1 chr12:57599341 3'AG 57599341 Downstream 68bp
chr12 57599408 57599408 1 + C A LGG 57599390 + 57599370 57599410 41 TGCTCCCAGCTCTGCAACAACACCAAGGGCGGCCACCTCTG TGCTCCCAGCTCTGCAACAACACCAAGGGCGGCCACCTATG < 41bp 1 0.354170383015463 1 0.190923482179642 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599390 chr12:57599408 synonymous SNV . 0 39 hm5C_associated_SNPs_25224 0 0 0 0 2 LRP1 chr12:57599460 5'GT 57599460 Upstream 53bp
chr12 57599408 57599408 1 + C A LGG 57599419 + 57599399 57599439 41 CGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGACGC CGGCCACCTATGCAGCTGCGCTCGGAACTTCATGAAGACGC < 41bp 1 0.217243583662651 1 0.16979056596756 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599419 chr12:57599408 synonymous SNV . 0 10 hm5C_associated_SNPs_25225 0 0 0 0 2 LRP1 chr12:57599341 3'AG 57599341 Downstream 68bp
chr12 57599408 57599408 1 + C A LGG 57599419 + 57599399 57599439 41 CGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGACGC CGGCCACCTATGCAGCTGCGCTCGGAACTTCATGAAGACGC < 41bp 1 0.217243583662651 1 0.16979056596756 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599419 chr12:57599408 synonymous SNV . 0 10 hm5C_associated_SNPs_25225 0 0 0 0 2 LRP1 chr12:57599460 5'GT 57599460 Upstream 53bp
chr11 71939482 71939482 1 + C A LGG 71939492 + 71939472 71939512 41 TGTGTGCGCCCTGCTTCTTCCTGTAGAGGGTGAGCGAGAGC TGTGTGCGCCATGCTTCTTCCTGTAGAGGGTGAGCGAGAGC < 41bp 1 0.63460287571873 1 0.727347135543823 experiment 0.730794248562539 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71939492 chr11:71939482 nonsynonymous SNV 0.982 4 11 hm5C_associated_SNPs_25227 0 0 1 0 2 INPPL1 chr11:71939392 3'AG 71939392 Downstream 91bp
chr11 71939482 71939482 1 + C A LGG 71939492 + 71939472 71939512 41 TGTGTGCGCCCTGCTTCTTCCTGTAGAGGGTGAGCGAGAGC TGTGTGCGCCATGCTTCTTCCTGTAGAGGGTGAGCGAGAGC < 41bp 1 0.63460287571873 1 0.727347135543823 experiment 0.730794248562539 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71939492 chr11:71939482 nonsynonymous SNV 0.982 4 11 hm5C_associated_SNPs_25227 0 0 1 0 2 INPPL1 chr11:71939542 5'GT 71939542 Upstream 61bp
chr11 65403922 65403922 1 + G A LGG 65403903 + 65403883 65403923 41 CACCAGGCCCTGGCTGGGGGCCGCGGTCCTCCCTGAGTGGC CACCAGGCCCTGGCTGGGGGCCGCGGTCCTCCCTGAGTGAC < 41bp 1 0.181860973135091 1 0.272885739803314 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403903 chr11:65403922 nonsynonymous SNV 0.944 1 40 hm5C_associated_SNPs_25228 0 0 1 0 1 PCNX3 chr11:65403862 3'AG 65403862 Downstream 61bp
chr11 65403922 65403922 1 + G A LGG 65403904 + 65403884 65403924 41 ACCAGGCCCTGGCTGGGGGCCGCGGTCCTCCCTGAGTGGCT ACCAGGCCCTGGCTGGGGGCCGCGGTCCTCCCTGAGTGACT < 41bp 1 0.396588955470836 1 0.500965416431427 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403904 chr11:65403922 nonsynonymous SNV 0.944 1 39 hm5C_associated_SNPs_25229 0 0 1 0 1 PCNX3 chr11:65403862 3'AG 65403862 Downstream 61bp
chr11 65403922 65403922 1 + G A LGG 65403939 + 65403919 65403959 41 GTGGCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGG GTGACTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGG < 41bp 1 0.0438542601665024 1 0.294442117214203 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403939 chr11:65403922 nonsynonymous SNV 0.944 1 4 hm5C_associated_SNPs_25230 0 0 1 0 1 PCNX3 chr11:65403862 3'AG 65403862 Downstream 61bp
chr11 65403922 65403922 1 + G A LGG 65403940 + 65403920 65403960 41 TGGCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGC TGACTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGC < 41bp 1 0.154855678447339 1 0.492737174034119 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403940 chr11:65403922 nonsynonymous SNV 0.944 1 3 hm5C_associated_SNPs_25231 0 0 1 0 1 PCNX3 chr11:65403862 3'AG 65403862 Downstream 61bp
chr11 65403922 65403922 1 + G A LGG 65403941 + 65403921 65403961 41 GGCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCC GACTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCC < 41bp 1 0.0535277329264093 1 0.155215889215469 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403941 chr11:65403922 nonsynonymous SNV 0.944 1 2 hm5C_associated_SNPs_25232 0 0 1 0 1 PCNX3 chr11:65403862 3'AG 65403862 Downstream 61bp
chr11 65403922 65403922 1 + G A LGG 65403942 + 65403922 65403962 41 GCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCCT ACTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCCT < 41bp 1 0.0747298401801442 1 0.278334468603134 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403942 chr11:65403922 nonsynonymous SNV 0.944 1 1 hm5C_associated_SNPs_25233 0 0 1 0 1 PCNX3 chr11:65403862 3'AG 65403862 Downstream 61bp
chr7 116533072 116533072 1 + A G LGG 116533053 + 116533033 116533073 41 ATAATTGTTTTGCAGATGTTCGGTTACTGCTTAATAATGAC ATAATTGTTTTGCAGATGTTCGGTTACTGCTTAATAATGGC < 41bp 1 0.221532497849308 1 0.451498001813889 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAPZA2 ENSG00000198898 CDS Human protein_coding chr7:116533053 chr7:116533072 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_25234 0 0 1 4 2 CAPZA2 chr7:116533048 3'AG 116533048 Downstream 25bp
chr7 116533072 116533072 1 + A G LGG 116533053 + 116533033 116533073 41 ATAATTGTTTTGCAGATGTTCGGTTACTGCTTAATAATGAC ATAATTGTTTTGCAGATGTTCGGTTACTGCTTAATAATGGC < 41bp 1 0.221532497849308 1 0.451498001813889 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAPZA2 ENSG00000198898 CDS Human protein_coding chr7:116533053 chr7:116533072 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_25234 0 0 1 4 2 CAPZA2 chr7:116533099 5'GT 116533099 Upstream 28bp
chr5 10254913 10254913 1 + G T LGG 10254899 + 10254879 10254919 41 TTGCCAAGCTGATGGTGGAACTGTCCAAGTCTCAGGATGAT TTGCCAAGCTGATGGTGGAACTGTCCAAGTCTCATGATGAT < 41bp 1 0.14546832391534 1 0.098592609167099 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10254899 chr5:10254913 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_25236 0 0 1 0 1 CCT5 chr5:10254950 5'GT 10254950 Upstream 38bp
chr5 10254913 10254913 1 + G T LGG 10254903 + 10254883 10254923 41 CAAGCTGATGGTGGAACTGTCCAAGTCTCAGGATGATGAAA CAAGCTGATGGTGGAACTGTCCAAGTCTCATGATGATGAAA < 41bp 1 0.217615179456918 1 0.206953287124634 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10254903 chr5:10254913 nonsynonymous SNV 0.999 4 31 hm5C_associated_SNPs_25237 0 0 1 0 1 CCT5 chr5:10254950 5'GT 10254950 Upstream 38bp
chr5 10254913 10254913 1 + G T LGG 10254909 + 10254889 10254929 41 GATGGTGGAACTGTCCAAGTCTCAGGATGATGAAATTGGAG GATGGTGGAACTGTCCAAGTCTCATGATGATGAAATTGGAG < 41bp 1 0.41339122361855 1 0.209260493516922 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10254909 chr5:10254913 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_25238 0 0 1 0 1 CCT5 chr5:10254950 5'GT 10254950 Upstream 38bp
chr2 27663750 27663750 1 + C T LGG 27663756 + 27663736 27663776 41 GTGACATCACCTGTCGTGCCCCCCTCTGTCAAGACTCCGAC GTGACATCACCTGTTGTGCCCCCCTCTGTCAAGACTCCGAC < 41bp 1 0.227460466536016 1 0.0167548656463623 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663756 chr2:27663750 synonymous SNV . 0 15 hm5C_associated_SNPs_25239 0 0 0 0 2 NRBP1 chr2:27663672 3'AG 27663672 Downstream 79bp
chr2 27663750 27663750 1 + C T LGG 27663756 + 27663736 27663776 41 GTGACATCACCTGTCGTGCCCCCCTCTGTCAAGACTCCGAC GTGACATCACCTGTTGTGCCCCCCTCTGTCAAGACTCCGAC < 41bp 1 0.227460466536016 1 0.0167548656463623 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663756 chr2:27663750 synonymous SNV . 0 15 hm5C_associated_SNPs_25239 0 0 0 0 2 NRBP1 chr2:27663807 5'GT 27663807 Upstream 58bp
chr11 65396306 65396306 1 + C T LGG 65396293 + 65396273 65396313 41 CCTTGACTGTGGCTCAGACTCGGCCATGCTGTTCGTCCAGG CCTTGACTGTGGCTCAGACTCGGCCATGCTGTTTGTCCAGG < 41bp 1 0.586252648130076 1 0.523662924766541 experiment 0.827494703739847 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65396293 chr11:65396306 synonymous SNV . 0 34 hm5C_associated_SNPs_25240 0 0 1 0 1 PCNX3 chr11:65396290 3'AG 65396290 Downstream 17bp
chr11 62655901 62655901 1 + G A LGG 62655920 + 62655900 62655940 41 CGTTCTCCGCTGGGCCTGGACTCTTCTCCTATATCCGCCAC CATTCTCCGCTGGGCCTGGACTCTTCTCCTATATCCGCCAC < 41bp 1 0.396849385079757 1 0.216875493526459 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62655920 chr11:62655901 synonymous SNV . 0 2 hm5C_associated_SNPs_25242 0 0 1 0 1 SLC3A2 chr11:62655803 3'AG 62655803 Downstream 99bp
chr7 94917922 94917922 1 + G T LGG 94917917 + 94917897 94917937 41 CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA CCGTTCAGGAATGGAGTGTGCAGCATGTTTCTCACTGGTTA < 41bp 1 0.542527640913011 1 0.0834850966930389 experiment 0.914944718173978 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917917 chr7:94917922 nonsynonymous SNV 0.999 5 26 hm5C_associated_SNPs_25243 0 0 0 0 1 PPP1R9A chr7:94917848 3'AG 94917848 Downstream 75bp
chr16 28994535 28994535 1 + G A LGG 28994555 + 28994535 28994575 41 GCTCCACCGCCGAGGCCTTCCAGATCGTGCTGTCCCACCTG ACTCCACCGCCGAGGCCTTCCAGATCGTGCTGTCCCACCTG < 41bp 1 0.623337642103249 1 0.885387718677521 experiment 0.753324715793501 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28994555 chr16:28994535 nonsynonymous SNV 0.359 3 1 hm5C_associated_SNPs_25246 0 0 0 0 2 SPNS1 chr16:28994513 3'AG 28994513 Downstream 23bp
chr16 28994535 28994535 1 + G A LGG 28994555 + 28994535 28994575 41 GCTCCACCGCCGAGGCCTTCCAGATCGTGCTGTCCCACCTG ACTCCACCGCCGAGGCCTTCCAGATCGTGCTGTCCCACCTG < 41bp 1 0.623337642103249 1 0.885387718677521 experiment 0.753324715793501 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28994555 chr16:28994535 nonsynonymous SNV 0.359 3 1 hm5C_associated_SNPs_25246 0 0 0 0 2 SPNS1 chr16:28994611 5'GT 28994611 Upstream 77bp
chr12 71977622 71977622 1 + C A LGG 71977616 + 71977596 71977636 41 GAACATGCTCACGGGAGTCTCCAGTGCCGTGCTGGCTGGTG GAACATGCTCACGGGAGTCTCCAGTGACGTGCTGGCTGGTG < 41bp 1 0.452947408719586 1 0.601753711700439 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LGR5 ENSG00000139292 CDS Human protein_coding chr12:71977616 chr12:71977622 nonsynonymous SNV 0.006 2 27 hm5C_associated_SNPs_25247 0 0 1 0 1 LGR5 chr12:71977692 5'GT 71977692 Upstream 71bp
chr6 31604861 31604861 1 + C A LGG 31604866 + 31604846 31604886 41 CAGGATTATCAAAAACTGAGCAGCAACCTTGGGGGACCTGG CAGGATTATCAAAAAATGAGCAGCAACCTTGGGGGACCTGG < 41bp 1 0.541023844772964 1 0.414173781871796 experiment 0.917952310454072 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31604866 chr6:31604861 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_25249 0 0 1 0 2 PRRC2A chr6:31604819 3'AG 31604819 Downstream 43bp
chr6 31604861 31604861 1 + C A LGG 31604866 + 31604846 31604886 41 CAGGATTATCAAAAACTGAGCAGCAACCTTGGGGGACCTGG CAGGATTATCAAAAAATGAGCAGCAACCTTGGGGGACCTGG < 41bp 1 0.541023844772964 1 0.414173781871796 experiment 0.917952310454072 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31604866 chr6:31604861 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_25249 0 0 1 0 2 PRRC2A chr6:31604913 5'GT 31604913 Upstream 53bp
chr4 169630277 169630277 1 + G A LGG 169630296 + 169630276 169630316 41 TGCCCAGCTGGTTGTCACCTCAGGTATGTGAGGAGTAAAAA TACCCAGCTGGTTGTCACCTCAGGTATGTGAGGAGTAAAAA < 41bp 1 0.369676605314311 1 0.776086866855621 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PALLD ENSG00000129116 CDS Human protein_coding chr4:169630296 chr4:169630277 nonsynonymous SNV 0.840 3 2 hm5C_associated_SNPs_25250 0 0 0 0 2 PALLD chr4:169630179 3'AG 169630179 Downstream 99bp
chr4 169630277 169630277 1 + G A LGG 169630296 + 169630276 169630316 41 TGCCCAGCTGGTTGTCACCTCAGGTATGTGAGGAGTAAAAA TACCCAGCTGGTTGTCACCTCAGGTATGTGAGGAGTAAAAA < 41bp 1 0.369676605314311 1 0.776086866855621 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PALLD ENSG00000129116 CDS Human protein_coding chr4:169630296 chr4:169630277 nonsynonymous SNV 0.840 3 2 hm5C_associated_SNPs_25250 0 0 0 0 2 PALLD chr4:169630298 5'GT 169630298 Upstream 22bp
chr19 808591 808591 1 + G A LGG 808586 + 808566 808606 41 CACAAGCTGCACGGGAAGCCCATCCGCATCACGCTCTCGAA CACAAGCTGCACGGGAAGCCCATCCACATCACGCTCTCGAA < 41bp 1 0.194880376030817 1 0.326999992132187 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:808586 chr19:808591 nonsynonymous SNV 0.010 1 26 hm5C_associated_SNPs_25251 0 0 1 0 1 PTBP1 chr19:808546 3'AG 808546 Downstream 46bp
chr6 31598957 31598957 1 + C T LGG 31598940 + 31598920 31598960 41 GAGACTCCTCCAGTACCTCCCCCACCACCCTATCTGGCCAG GAGACTCCTCCAGTACCTCCCCCACCACCCTATCTGGTCAG < 41bp 1 0.140660094197011 1 0.446269035339355 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31598940 chr6:31598957 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_25252 0 0 1 0 1 PRRC2A chr6:31598916 3'AG 31598916 Downstream 42bp
chr1 145440773 145440773 1 + C A LGG 145440782 + 145440762 145440802 41 ATCTGAACATCCCTGATACCCCAGAAGGTGAGCCAGACCTA ATCTGAACATCACTGATACCCCAGAAGGTGAGCCAGACCTA < 41bp 1 0.276826140113501 1 0.367423474788666 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TXNIP ENSG00000117289 CDS Human other chr1:145440782 chr1:145440773 nonsynonymous SNV . 0 12 hm5C_associated_SNPs_25253 0 0 1 0 1 TXNIP chr1:145440788 5'GT 145440788 Upstream 16bp
chr1 145440773 145440773 1 + C A LGG 145440783 + 145440763 145440803 41 TCTGAACATCCCTGATACCCCAGAAGGTGAGCCAGACCTAA TCTGAACATCACTGATACCCCAGAAGGTGAGCCAGACCTAA < 41bp 1 0.347757368562334 1 0.559590756893158 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TXNIP ENSG00000117289 CDS Human other chr1:145440783 chr1:145440773 nonsynonymous SNV . 0 11 hm5C_associated_SNPs_25254 0 0 1 0 1 TXNIP chr1:145440788 5'GT 145440788 Upstream 16bp
chr11 108559743 108559743 1 + G A LGG 108559748 + 108559728 108559768 41 ATTCCTTTTTGAGAAGCCATCTGAAGAAGAAGAGCATTGTA ATTCCTTTTTGAGAAACCATCTGAAGAAGAAGAGCATTGTA < 41bp 1 0.605841745703966 1 0.783204257488251 experiment 0.788316508592069 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX10 ENSG00000178105 CDS Human protein_coding chr11:108559748 chr11:108559743 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_25258 0 0 1 0 2 DDX10 chr11:108559663 3'AG 108559663 Downstream 81bp
chr11 108559743 108559743 1 + G A LGG 108559748 + 108559728 108559768 41 ATTCCTTTTTGAGAAGCCATCTGAAGAAGAAGAGCATTGTA ATTCCTTTTTGAGAAACCATCTGAAGAAGAAGAGCATTGTA < 41bp 1 0.605841745703966 1 0.783204257488251 experiment 0.788316508592069 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX10 ENSG00000178105 CDS Human protein_coding chr11:108559748 chr11:108559743 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_25258 0 0 1 0 2 DDX10 chr11:108559789 5'GT 108559789 Upstream 47bp
chr1 22333432 22333432 1 + G A LGG 22333421 + 22333401 22333441 41 CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCACCTCACTCC < 41bp 1 0.0986618974858443 1 0.13952311873436 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333421 chr1:22333432 nonsynonymous SNV 0.018 4 32 hm5C_associated_SNPs_25259 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 62bp
chr1 22333432 22333432 1 + G A LGG 22333421 + 22333401 22333441 41 CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCACCTCACTCC < 41bp 1 0.0986618974858443 1 0.13952311873436 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333421 chr1:22333432 nonsynonymous SNV 0.018 4 32 hm5C_associated_SNPs_25259 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 76bp
chr1 22333432 22333432 1 + G A LGG 22333422 + 22333402 22333442 41 AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC AGCGCCCAGCTGGGAGATGCCGTCCAGCTCACCTCACTCCC < 41bp 1 0.368452801632841 1 0.674854278564453 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333422 chr1:22333432 nonsynonymous SNV 0.018 4 31 hm5C_associated_SNPs_25260 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 62bp
chr1 22333432 22333432 1 + G A LGG 22333422 + 22333402 22333442 41 AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC AGCGCCCAGCTGGGAGATGCCGTCCAGCTCACCTCACTCCC < 41bp 1 0.368452801632841 1 0.674854278564453 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333422 chr1:22333432 nonsynonymous SNV 0.018 4 31 hm5C_associated_SNPs_25260 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 76bp
chr1 22333432 22333432 1 + G A LGG 22333425 + 22333405 22333445 41 GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC GCCCAGCTGGGAGATGCCGTCCAGCTCACCTCACTCCCTCC < 41bp 1 0.364091976625281 1 0.740451991558075 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333425 chr1:22333432 nonsynonymous SNV 0.018 4 28 hm5C_associated_SNPs_25261 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 62bp
chr1 22333432 22333432 1 + G A LGG 22333425 + 22333405 22333445 41 GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC GCCCAGCTGGGAGATGCCGTCCAGCTCACCTCACTCCCTCC < 41bp 1 0.364091976625281 1 0.740451991558075 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333425 chr1:22333432 nonsynonymous SNV 0.018 4 28 hm5C_associated_SNPs_25261 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 76bp
chr1 22333432 22333432 1 + G A LGG 22333426 + 22333406 22333446 41 CCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCC CCCAGCTGGGAGATGCCGTCCAGCTCACCTCACTCCCTCCC < 41bp 1 0.544344247692231 1 0.593817472457886 experiment 0.911311504615538 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333426 chr1:22333432 nonsynonymous SNV 0.018 4 27 hm5C_associated_SNPs_25262 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 62bp
chr1 22333432 22333432 1 + G A LGG 22333426 + 22333406 22333446 41 CCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCC CCCAGCTGGGAGATGCCGTCCAGCTCACCTCACTCCCTCCC < 41bp 1 0.544344247692231 1 0.593817472457886 experiment 0.911311504615538 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333426 chr1:22333432 nonsynonymous SNV 0.018 4 27 hm5C_associated_SNPs_25262 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 76bp
chr1 22333432 22333432 1 + G A LGG 22333429 + 22333409 22333449 41 AGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCT AGCTGGGAGATGCCGTCCAGCTCACCTCACTCCCTCCCGCT < 41bp 1 0.371540357665655 1 0.131227284669876 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333429 chr1:22333432 nonsynonymous SNV 0.018 4 24 hm5C_associated_SNPs_25263 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 62bp
chr1 22333432 22333432 1 + G A LGG 22333429 + 22333409 22333449 41 AGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCT AGCTGGGAGATGCCGTCCAGCTCACCTCACTCCCTCCCGCT < 41bp 1 0.371540357665655 1 0.131227284669876 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333429 chr1:22333432 nonsynonymous SNV 0.018 4 24 hm5C_associated_SNPs_25263 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 76bp
chr1 22333432 22333432 1 + G A LGG 22333431 + 22333411 22333451 41 CTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGG CTGGGAGATGCCGTCCAGCTCACCTCACTCCCTCCCGCTGG < 41bp 1 0.658334340102241 1 0.244765818119049 experiment 0.683331319795518 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333431 chr1:22333432 nonsynonymous SNV 0.018 4 22 hm5C_associated_SNPs_25264 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 62bp
chr1 22333432 22333432 1 + G A LGG 22333431 + 22333411 22333451 41 CTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGG CTGGGAGATGCCGTCCAGCTCACCTCACTCCCTCCCGCTGG < 41bp 1 0.658334340102241 1 0.244765818119049 experiment 0.683331319795518 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333431 chr1:22333432 nonsynonymous SNV 0.018 4 22 hm5C_associated_SNPs_25264 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 76bp
chr1 22333432 22333432 1 + G A LGG 22333433 + 22333413 22333453 41 GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG GGGAGATGCCGTCCAGCTCACCTCACTCCCTCCCGCTGGTG < 41bp 1 0.296056855688398 1 0.140532642602921 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333433 chr1:22333432 nonsynonymous SNV 0.018 4 20 hm5C_associated_SNPs_25265 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 62bp
chr1 22333432 22333432 1 + G A LGG 22333433 + 22333413 22333453 41 GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG GGGAGATGCCGTCCAGCTCACCTCACTCCCTCCCGCTGGTG < 41bp 1 0.296056855688398 1 0.140532642602921 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333433 chr1:22333432 nonsynonymous SNV 0.018 4 20 hm5C_associated_SNPs_25265 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 76bp
chr1 22333432 22333432 1 + G A LGG 22333434 + 22333414 22333454 41 GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA GGAGATGCCGTCCAGCTCACCTCACTCCCTCCCGCTGGTGA < 41bp 1 0.263826017448755 1 0.307299435138702 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333434 chr1:22333432 nonsynonymous SNV 0.018 4 19 hm5C_associated_SNPs_25266 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 62bp
chr1 22333432 22333432 1 + G A LGG 22333434 + 22333414 22333454 41 GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA GGAGATGCCGTCCAGCTCACCTCACTCCCTCCCGCTGGTGA < 41bp 1 0.263826017448755 1 0.307299435138702 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333434 chr1:22333432 nonsynonymous SNV 0.018 4 19 hm5C_associated_SNPs_25266 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 76bp
chr1 22333432 22333432 1 + G A LGG 22333436 + 22333416 22333456 41 AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA AGATGCCGTCCAGCTCACCTCACTCCCTCCCGCTGGTGACA < 41bp 1 0.14425797550694 1 0.336667418479919 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333436 chr1:22333432 nonsynonymous SNV 0.018 4 17 hm5C_associated_SNPs_25267 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 62bp
chr1 22333432 22333432 1 + G A LGG 22333436 + 22333416 22333456 41 AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA AGATGCCGTCCAGCTCACCTCACTCCCTCCCGCTGGTGACA < 41bp 1 0.14425797550694 1 0.336667418479919 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333436 chr1:22333432 nonsynonymous SNV 0.018 4 17 hm5C_associated_SNPs_25267 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 76bp
chr1 22333432 22333432 1 + G A LGG 22333438 + 22333418 22333458 41 ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC ATGCCGTCCAGCTCACCTCACTCCCTCCCGCTGGTGACATC < 41bp 1 0.349160923019077 1 0.123477637767792 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333438 chr1:22333432 nonsynonymous SNV 0.018 4 15 hm5C_associated_SNPs_25268 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 62bp
chr1 22333432 22333432 1 + G A LGG 22333438 + 22333418 22333458 41 ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC ATGCCGTCCAGCTCACCTCACTCCCTCCCGCTGGTGACATC < 41bp 1 0.349160923019077 1 0.123477637767792 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333438 chr1:22333432 nonsynonymous SNV 0.018 4 15 hm5C_associated_SNPs_25268 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 76bp
chr1 22333432 22333432 1 + G A LGG 22333440 + 22333420 22333460 41 GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT GCCGTCCAGCTCACCTCACTCCCTCCCGCTGGTGACATCCT < 41bp 1 0.0782619459054896 1 0.0734361410140991 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333440 chr1:22333432 nonsynonymous SNV 0.018 4 13 hm5C_associated_SNPs_25269 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 62bp
chr1 22333432 22333432 1 + G A LGG 22333440 + 22333420 22333460 41 GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT GCCGTCCAGCTCACCTCACTCCCTCCCGCTGGTGACATCCT < 41bp 1 0.0782619459054896 1 0.0734361410140991 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333440 chr1:22333432 nonsynonymous SNV 0.018 4 13 hm5C_associated_SNPs_25269 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 76bp
chr1 22333432 22333432 1 + G A LGG 22333441 + 22333421 22333461 41 CCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTT CCGTCCAGCTCACCTCACTCCCTCCCGCTGGTGACATCCTT < 41bp 1 0.0427734684657078 1 0.0639622807502747 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333441 chr1:22333432 nonsynonymous SNV 0.018 4 12 hm5C_associated_SNPs_25270 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 62bp
chr1 22333432 22333432 1 + G A LGG 22333441 + 22333421 22333461 41 CCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTT CCGTCCAGCTCACCTCACTCCCTCCCGCTGGTGACATCCTT < 41bp 1 0.0427734684657078 1 0.0639622807502747 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333441 chr1:22333432 nonsynonymous SNV 0.018 4 12 hm5C_associated_SNPs_25270 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 76bp
chr1 22333432 22333432 1 + G A LGG 22333442 + 22333422 22333462 41 CGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTC CGTCCAGCTCACCTCACTCCCTCCCGCTGGTGACATCCTTC < 41bp 1 0.398832060174932 1 0.171911090612411 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333442 chr1:22333432 nonsynonymous SNV 0.018 4 11 hm5C_associated_SNPs_25271 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 62bp
chr1 22333432 22333432 1 + G A LGG 22333442 + 22333422 22333462 41 CGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTC CGTCCAGCTCACCTCACTCCCTCCCGCTGGTGACATCCTTC < 41bp 1 0.398832060174932 1 0.171911090612411 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333442 chr1:22333432 nonsynonymous SNV 0.018 4 11 hm5C_associated_SNPs_25271 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 76bp
chr1 22333432 22333432 1 + G A LGG 22333444 + 22333424 22333464 41 TCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCC TCCAGCTCACCTCACTCCCTCCCGCTGGTGACATCCTTCCC < 41bp 1 0.289554151966393 1 0.154171019792557 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333444 chr1:22333432 nonsynonymous SNV 0.018 4 9 hm5C_associated_SNPs_25272 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 62bp
chr1 22333432 22333432 1 + G A LGG 22333444 + 22333424 22333464 41 TCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCC TCCAGCTCACCTCACTCCCTCCCGCTGGTGACATCCTTCCC < 41bp 1 0.289554151966393 1 0.154171019792557 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333444 chr1:22333432 nonsynonymous SNV 0.018 4 9 hm5C_associated_SNPs_25272 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 76bp
chr1 22333432 22333432 1 + G A LGG 22333445 + 22333425 22333465 41 CCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCA CCAGCTCACCTCACTCCCTCCCGCTGGTGACATCCTTCCCA < 41bp 1 0.283674255662545 1 0.294141501188278 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333445 chr1:22333432 nonsynonymous SNV 0.018 4 8 hm5C_associated_SNPs_25273 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 62bp
chr1 22333432 22333432 1 + G A LGG 22333445 + 22333425 22333465 41 CCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCA CCAGCTCACCTCACTCCCTCCCGCTGGTGACATCCTTCCCA < 41bp 1 0.283674255662545 1 0.294141501188278 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333445 chr1:22333432 nonsynonymous SNV 0.018 4 8 hm5C_associated_SNPs_25273 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 76bp
chr1 22333432 22333432 1 + G A LGG 22333446 + 22333426 22333466 41 CAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCAA CAGCTCACCTCACTCCCTCCCGCTGGTGACATCCTTCCCAA < 41bp 1 0.673220012928388 1 0.826444447040558 experiment 0.653559974143225 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333446 chr1:22333432 nonsynonymous SNV 0.018 4 7 hm5C_associated_SNPs_25274 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 62bp
chr1 22333432 22333432 1 + G A LGG 22333446 + 22333426 22333466 41 CAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCAA CAGCTCACCTCACTCCCTCCCGCTGGTGACATCCTTCCCAA < 41bp 1 0.673220012928388 1 0.826444447040558 experiment 0.653559974143225 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333446 chr1:22333432 nonsynonymous SNV 0.018 4 7 hm5C_associated_SNPs_25274 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 76bp
chr19 16957837 16957837 1 + G A LGG 16957840 + 16957820 16957860 41 ATGTCTGAAGAGGAGGTGTTCACCGAGGTGGCCAACCTCTT ATGTCTGAAGAGGAGGTATTCACCGAGGTGGCCAACCTCTT < 41bp 1 0.713786776470645 1 0.0763708055019379 experiment 0.572426447058709 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SIN3B ENSG00000127511 CDS Human protein_coding chr19:16957840 chr19:16957837 synonymous SNV . 0 18 hm5C_associated_SNPs_25275 0 0 1 0 2 SIN3B chr19:16957781 3'AG 16957781 Downstream 57bp
chr19 16957837 16957837 1 + G A LGG 16957840 + 16957820 16957860 41 ATGTCTGAAGAGGAGGTGTTCACCGAGGTGGCCAACCTCTT ATGTCTGAAGAGGAGGTATTCACCGAGGTGGCCAACCTCTT < 41bp 1 0.713786776470645 1 0.0763708055019379 experiment 0.572426447058709 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SIN3B ENSG00000127511 CDS Human protein_coding chr19:16957840 chr19:16957837 synonymous SNV . 0 18 hm5C_associated_SNPs_25275 0 0 1 0 2 SIN3B chr19:16957924 5'GT 16957924 Upstream 88bp
chr22 51117811 51117811 1 + C T LGG 51117816 + 51117796 51117836 41 CATGGGGGCCCAGAACGCCTCGGGGAACACAGCCCTGCACA CATGGGGGCCCAGAATGCCTCGGGGAACACAGCCCTGCACA < 41bp 1 0.789001616574419 1 0.978212773799896 experiment 0.421996766851161 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51117816 chr22:51117811 synonymous SNV . 0 16 hm5C_associated_SNPs_25278 0 0 0 0 2 SHANK3 chr22:51117740 3'AG 51117740 Downstream 72bp
chr22 51117811 51117811 1 + C T LGG 51117816 + 51117796 51117836 41 CATGGGGGCCCAGAACGCCTCGGGGAACACAGCCCTGCACA CATGGGGGCCCAGAATGCCTCGGGGAACACAGCCCTGCACA < 41bp 1 0.789001616574419 1 0.978212773799896 experiment 0.421996766851161 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51117816 chr22:51117811 synonymous SNV . 0 16 hm5C_associated_SNPs_25278 0 0 0 0 2 SHANK3 chr22:51117856 5'GT 51117856 Upstream 46bp
chr1 92769570 92769570 1 + G A LGG 92769553 + 92769533 92769573 41 GGGGAGGTTCATTACACCTGCTCACTACAGTGATGTCGTGG GGGGAGGTTCATTACACCTGCTCACTACAGTGATGTCATGG < 41bp 1 0.18427650143622 1 0.0696191489696503 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPAP2 ENSG00000122484 CDS Human protein_coding chr1:92769553 chr1:92769570 nonsynonymous SNV 0.795 3 38 hm5C_associated_SNPs_25279 0 0 1 0 2 RPAP2 chr1:92769534 3'AG 92769534 Downstream 37bp
chr1 92769570 92769570 1 + G A LGG 92769553 + 92769533 92769573 41 GGGGAGGTTCATTACACCTGCTCACTACAGTGATGTCGTGG GGGGAGGTTCATTACACCTGCTCACTACAGTGATGTCATGG < 41bp 1 0.18427650143622 1 0.0696191489696503 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPAP2 ENSG00000122484 CDS Human protein_coding chr1:92769553 chr1:92769570 nonsynonymous SNV 0.795 3 38 hm5C_associated_SNPs_25279 0 0 1 0 2 RPAP2 chr1:92769632 5'GT 92769632 Upstream 63bp
chr5 10254886 10254886 1 + G A LGG 10254899 + 10254879 10254919 41 TTGCCAAGCTGATGGTGGAACTGTCCAAGTCTCAGGATGAT TTGCCAAACTGATGGTGGAACTGTCCAAGTCTCAGGATGAT < 41bp 1 0.118936876731918 1 0.0928276777267456 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10254899 chr5:10254886 synonymous SNV . 0 8 hm5C_associated_SNPs_25280 0 0 1 0 1 CCT5 chr5:10254950 5'GT 10254950 Upstream 65bp
chr5 10254886 10254886 1 + G A LGG 10254903 + 10254883 10254923 41 CAAGCTGATGGTGGAACTGTCCAAGTCTCAGGATGATGAAA CAAACTGATGGTGGAACTGTCCAAGTCTCAGGATGATGAAA < 41bp 1 0.229455595295081 1 0.205506205558777 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10254903 chr5:10254886 synonymous SNV . 0 4 hm5C_associated_SNPs_25281 0 0 1 0 1 CCT5 chr5:10254950 5'GT 10254950 Upstream 65bp
chr19 49993743 49993743 1 + G A LGG 49993749 + 49993729 49993769 41 TAGTGAAGTACCTGGCTTTCCTCCGCAAGCGGATGAACACC TAGTGAAGTACCTGACTTTCCTCCGCAAGCGGATGAACACC < 41bp 1 0.797947661577864 1 0.274920880794525 experiment 0.404104676844272 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993749 chr19:49993743 nonsynonymous SNV 1.000 0 15 hm5C_associated_SNPs_25282 0 0 1 0 2 RPL13A chr19:49993732 3'AG 49993732 Downstream 12bp
chr19 49993743 49993743 1 + G A LGG 49993749 + 49993729 49993769 41 TAGTGAAGTACCTGGCTTTCCTCCGCAAGCGGATGAACACC TAGTGAAGTACCTGACTTTCCTCCGCAAGCGGATGAACACC < 41bp 1 0.797947661577864 1 0.274920880794525 experiment 0.404104676844272 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993749 chr19:49993743 nonsynonymous SNV 1.000 0 15 hm5C_associated_SNPs_25282 0 0 1 0 2 RPL13A chr19:49993833 5'GT 49993833 Upstream 91bp
chr12 72274292 72274292 1 + G A LGG 72274307 + 72274287 72274327 41 AGAAAGAGGTCATCGAGGATCAGAACATCTGAACAGTTACG AGAAAAAGGTCATCGAGGATCAGAACATCTGAACAGTTACG < 41bp 1 0.689906306004563 1 0.530162572860718 experiment 0.620187387990873 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72274307 chr12:72274292 nonsynonymous SNV 0.923 1 6 hm5C_associated_SNPs_25283 0 0 1 0 2 TBC1D15 chr12:72274249 3'AG 72274249 Downstream 44bp
chr12 72274292 72274292 1 + G A LGG 72274307 + 72274287 72274327 41 AGAAAGAGGTCATCGAGGATCAGAACATCTGAACAGTTACG AGAAAAAGGTCATCGAGGATCAGAACATCTGAACAGTTACG < 41bp 1 0.689906306004563 1 0.530162572860718 experiment 0.620187387990873 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72274307 chr12:72274292 nonsynonymous SNV 0.923 1 6 hm5C_associated_SNPs_25283 0 0 1 0 2 TBC1D15 chr12:72274387 5'GT 72274387 Upstream 96bp
chr1 11898641 11898641 1 + C A LGG 11898626 + 11898606 11898646 41 CATGAACCCTTCGCCTTTCACCGTCTCGCCCAACACCCACG CATGAACCCTTCGCCTTTCACCGTCTCGCCCAACAACCACG < 41bp 1 0.10421460600866 1 0.0315956771373749 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11898626 chr1:11898641 nonsynonymous SNV 0.990 3 36 hm5C_associated_SNPs_25284 0 0 0 0 2 CLCN6 chr1:11898592 3'AG 11898592 Downstream 50bp
chr1 11898641 11898641 1 + C A LGG 11898626 + 11898606 11898646 41 CATGAACCCTTCGCCTTTCACCGTCTCGCCCAACACCCACG CATGAACCCTTCGCCTTTCACCGTCTCGCCCAACAACCACG < 41bp 1 0.10421460600866 1 0.0315956771373749 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11898626 chr1:11898641 nonsynonymous SNV 0.990 3 36 hm5C_associated_SNPs_25284 0 0 0 0 2 CLCN6 chr1:11898717 5'GT 11898717 Upstream 77bp
chr12 989970 989970 1 + T G LGG 989989 + 989969 990009 41 ATTCTACAGTCCTATCCCCTCCCATGCCGACAGAAGTACTG AGTCTACAGTCCTATCCCCTCCCATGCCGACAGAAGTACTG < 41bp 1 0.120599746814816 1 0.142801105976105 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient WNK1 ENSG00000060237 CDS Human protein_coding chr12:989989 chr12:989970 nonsynonymous SNV 0.995 1 2 hm5C_associated_SNPs_25286 0 0 1 0 1 WNK1 chr12:989887 3'AG 989887 Downstream 84bp
chr11 74329667 74329667 1 + C A LGG 74329670 + 74329650 74329690 41 AGTTTGAGCAGTCACATCTTCACATGTCAAGTGAGACACAA AGTTTGAGCAGTCACATATTCACATGTCAAGTGAGACACAA < 41bp 1 0.679913977492956 1 0.0844721794128418 experiment 0.640172045014088 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329670 chr11:74329667 nonsynonymous SNV 0.846 0 18 hm5C_associated_SNPs_25288 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 86bp
chr1 109804139 109804139 1 + G A LGG 109804156 + 109804136 109804176 41 TTTGCCACAAAGGAGCGCGACGGGTTGCTGTTGTACAATGG TTTACCACAAAGGAGCGCGACGGGTTGCTGTTGTACAATGG < 41bp 1 0.245568266834904 1 0.292142450809479 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109804156 chr1:109804139 nonsynonymous SNV 0.943 1 4 hm5C_associated_SNPs_25289 0 0 1 0 1 CELSR2 chr1:109804135 3'AG 109804135 Downstream 5bp
chr7 142460314 142460314 1 + G A LGG 142460295 + 142460275 142460315 41 CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGC CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATAC < 41bp 1 0.402990864826021 1 0.360280364751816 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460295 chr7:142460314 nonsynonymous SNV 0.002 3 40 hm5C_associated_SNPs_25290 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 33bp
chr7 142460314 142460314 1 + G A LGG 142460299 + 142460279 142460319 41 CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATACTCCT < 41bp 1 0.647613841899544 1 0.247139930725098 experiment 0.704772316200912 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460299 chr7:142460314 nonsynonymous SNV 0.002 3 36 hm5C_associated_SNPs_25291 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 33bp
chr7 142460314 142460314 1 + G A LGG 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGACGAGCTGCAGTGCCTGGATACTCCTGTG < 41bp 1 0.292282850844991 1 0.169716835021973 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460314 nonsynonymous SNV 0.002 3 33 hm5C_associated_SNPs_25292 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 33bp
chr7 142460314 142460314 1 + G A LGG 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGCCTGGATACTCCTGTGCTGAG < 41bp 1 0.205103780930364 1 0.120878994464874 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460314 nonsynonymous SNV 0.002 3 28 hm5C_associated_SNPs_25293 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 33bp
chr7 142460314 142460314 1 + G A LGG 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGGATACTCCTGTGCTGAGCCAGGCTA < 41bp 1 0.477283143246575 1 0.267411708831787 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460314 nonsynonymous SNV 0.002 3 20 hm5C_associated_SNPs_25294 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 33bp
chr7 142460314 142460314 1 + G A LGG 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGGATACTCCTGTGCTGAGCCAGGCTAAG < 41bp 1 0.301855463401533 1 0.316171646118164 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460314 nonsynonymous SNV 0.002 3 18 hm5C_associated_SNPs_25295 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 33bp
chr7 142460314 142460314 1 + G A LGG 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGGATACTCCTGTGCTGAGCCAGGCTAAGT < 41bp 1 0.520282617492365 1 0.220686972141266 experiment 0.95943476501527 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460314 nonsynonymous SNV 0.002 3 17 hm5C_associated_SNPs_25296 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 33bp
chr7 142460314 142460314 1 + G A LGG 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATACTCCTGTGCTGAGCCAGGCTAAGTGTGAA < 41bp 1 0.432632941434555 1 0.098967432975769 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460314 nonsynonymous SNV 0.002 3 12 hm5C_associated_SNPs_25297 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 33bp
chr7 142460314 142460314 1 + G A LGG 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATACTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC < 41bp 1 0.379065502368314 1 0.209784686565399 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460314 nonsynonymous SNV 0.002 3 7 hm5C_associated_SNPs_25298 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 33bp
chr7 142460314 142460314 1 + G A LGG 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATACTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC < 41bp 1 0.52145776206265 1 0.67963695526123 experiment 0.9570844758747 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460314 nonsynonymous SNV 0.002 3 6 hm5C_associated_SNPs_25299 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 33bp
chr7 142460314 142460314 1 + G A LGG 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TACTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC < 41bp 1 0.369193593348989 1 0.125527530908585 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460314 nonsynonymous SNV 0.002 3 2 hm5C_associated_SNPs_25300 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 33bp
chr12 57599399 57599399 1 + C T LGG 57599390 + 57599370 57599410 41 TGCTCCCAGCTCTGCAACAACACCAAGGGCGGCCACCTCTG TGCTCCCAGCTCTGCAACAACACCAAGGGTGGCCACCTCTG < 41bp 1 0.360291970776229 1 0.213758051395416 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599390 chr12:57599399 synonymous SNV . 0 30 hm5C_associated_SNPs_25301 0 0 0 0 2 LRP1 chr12:57599341 3'AG 57599341 Downstream 59bp
chr12 57599399 57599399 1 + C T LGG 57599390 + 57599370 57599410 41 TGCTCCCAGCTCTGCAACAACACCAAGGGCGGCCACCTCTG TGCTCCCAGCTCTGCAACAACACCAAGGGTGGCCACCTCTG < 41bp 1 0.360291970776229 1 0.213758051395416 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599390 chr12:57599399 synonymous SNV . 0 30 hm5C_associated_SNPs_25301 0 0 0 0 2 LRP1 chr12:57599460 5'GT 57599460 Upstream 62bp
chr12 57599399 57599399 1 + C T LGG 57599419 + 57599399 57599439 41 CGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGACGC TGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGACGC < 41bp 1 0.244485634447746 1 0.328594207763672 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599419 chr12:57599399 synonymous SNV . 0 1 hm5C_associated_SNPs_25302 0 0 0 0 2 LRP1 chr12:57599341 3'AG 57599341 Downstream 59bp
chr12 57599399 57599399 1 + C T LGG 57599419 + 57599399 57599439 41 CGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGACGC TGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGACGC < 41bp 1 0.244485634447746 1 0.328594207763672 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599419 chr12:57599399 synonymous SNV . 0 1 hm5C_associated_SNPs_25302 0 0 0 0 2 LRP1 chr12:57599460 5'GT 57599460 Upstream 62bp
chr19 8528381 8528381 1 + G A LGG 8528388 + 8528368 8528408 41 GCTTCCTCCAAAGGGATGTGCGTAAGTATCGTCTAGTTACT GCTTCCTCCAAAGAGATGTGCGTAAGTATCGTCTAGTTACT < 41bp 1 0.307837204468029 1 0.0474254488945007 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8528388 chr19:8528381 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_25304 0 0 1 0 2 HNRNPM chr19:8528381 3'AG 8528381 Downstream 1bp
chr19 8528381 8528381 1 + G A LGG 8528388 + 8528368 8528408 41 GCTTCCTCCAAAGGGATGTGCGTAAGTATCGTCTAGTTACT GCTTCCTCCAAAGAGATGTGCGTAAGTATCGTCTAGTTACT < 41bp 1 0.307837204468029 1 0.0474254488945007 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8528388 chr19:8528381 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_25304 0 0 1 0 2 HNRNPM chr19:8528388 5'GT 8528388 Upstream 8bp
chr19 11145688 11145688 1 + C T LGG 11145668 + 11145648 11145688 41 TCATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGAC TCATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGAT < 41bp 1 0.0725681899386386 1 0.0953952968120575 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145668 chr19:11145688 synonymous SNV . 0 41 hm5C_associated_SNPs_25307 1 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 99bp
chr19 11145688 11145688 1 + C T LGG 11145669 + 11145649 11145689 41 CATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACG CATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGATG < 41bp 1 0.225261120119233 1 0.137235671281815 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145669 chr19:11145688 synonymous SNV . 0 40 hm5C_associated_SNPs_25308 1 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 99bp
chr19 11145688 11145688 1 + C T LGG 11145672 + 11145652 11145692 41 GGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACGACG GGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGATGACG < 41bp 1 0.542106805168064 1 0.523233950138092 experiment 0.915786389663871 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145672 chr19:11145688 synonymous SNV . 0 37 hm5C_associated_SNPs_25309 1 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 99bp
chr19 11145688 11145688 1 + C T LGG 11145691 + 11145671 11145711 41 TCGTGGATCATCAAGGACGACGCGGAGGTGGAGCGGCTGAC TCGTGGATCATCAAGGATGACGCGGAGGTGGAGCGGCTGAC < 41bp 1 0.768904058057162 1 0.690637290477753 experiment 0.462191883885675 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145691 chr19:11145688 synonymous SNV . 0 18 hm5C_associated_SNPs_25310 1 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 99bp
chr19 11145688 11145688 1 + C T LGG 11145704 + 11145684 11145724 41 AGGACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAG AGGATGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAG < 41bp 1 0.469505521751242 1 0.547757148742676 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145704 chr19:11145688 synonymous SNV . 0 5 hm5C_associated_SNPs_25311 1 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 99bp
chr19 11145688 11145688 1 + C T LGG 11145707 + 11145687 11145727 41 ACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAGGAG ATGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAGGAG < 41bp 1 0.226009814298357 1 0.367678433656693 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145707 chr19:11145688 synonymous SNV . 0 2 hm5C_associated_SNPs_25312 1 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 99bp
chr5 10387155 10387155 1 + G A LGG 10387150 + 10387130 10387170 41 CTGGCTCCGTGAGCTCACTACTGACGCTGCCATTAGATATG CTGGCTCCGTGAGCTCACTACTGACACTGCCATTAGATATG < 41bp 1 0.21533349571535 1 0.157603472471237 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10387150 chr5:10387155 synonymous SNV . 0 26 hm5C_associated_SNPs_25313 0 0 1 0 2 MARCH6 chr5:10387106 3'AG 10387106 Downstream 50bp
chr5 10387155 10387155 1 + G A LGG 10387150 + 10387130 10387170 41 CTGGCTCCGTGAGCTCACTACTGACGCTGCCATTAGATATG CTGGCTCCGTGAGCTCACTACTGACACTGCCATTAGATATG < 41bp 1 0.21533349571535 1 0.157603472471237 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10387150 chr5:10387155 synonymous SNV . 0 26 hm5C_associated_SNPs_25313 0 0 1 0 2 MARCH6 chr5:10387178 5'GT 10387178 Upstream 24bp
chr2 241533978 241533978 1 + G T LGG 241533998 + 241533978 241534018 41 GGTAGATGCAGCGGTAGCATCTGAGCTCCTGTCCCAGCTCC TGTAGATGCAGCGGTAGCATCTGAGCTCCTGTCCCAGCTCC < 41bp 1 0.755761813813167 1 0.770394206047058 experiment 0.488476372373666 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241533998 chr2:241533978 nonsynonymous SNV 0.196 0 1 hm5C_associated_SNPs_25314 0 0 1 1 1 CAPN10 chr2:241533960 3'AG 241533960 Downstream 19bp
chr10 17277379 17277379 1 + A T LGG 17277369 + 17277349 17277389 41 TTGCCACCTACAGGAAGCTGCTGGAAGGCGAGGAGAGCAGG TTGCCACCTACAGGAAGCTGCTGGAAGGCGTGGAGAGCAGG < 41bp 1 0.642247602596448 1 0.64296019077301 experiment 0.715504794807105 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277369 chr10:17277379 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_25315 0 0 1 1 1 VIM chr10:17277388 5'GT 17277388 Upstream 10bp
chr10 17277379 17277379 1 + A T LGG 17277386 + 17277366 17277406 41 CTGCTGGAAGGCGAGGAGAGCAGGTAGGGAACTCAGACTTG CTGCTGGAAGGCGTGGAGAGCAGGTAGGGAACTCAGACTTG < 41bp 1 0.662005024789292 1 0.626855671405792 experiment 0.675989950421416 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277386 chr10:17277379 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_25316 0 0 1 1 1 VIM chr10:17277388 5'GT 17277388 Upstream 10bp
chr4 57340537 57340537 1 + A G LGG 57340545 + 57340525 57340565 41 ACCAGGCCATGAAAATCCTACAAAAAGCTGAAGGTTGGAAG ACCAGGCCATGAGAATCCTACAAAAAGCTGAAGGTTGGAAG < 41bp 1 0.596141925015775 1 0.347072392702103 experiment 0.80771614996845 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRP72 ENSG00000174780 CDS Human protein_coding chr4:57340545 chr4:57340537 nonsynonymous SNV 0.999 0 13 hm5C_associated_SNPs_25317 0 0 1 0 2 SRP72 chr4:57340446 3'AG 57340446 Downstream 92bp
chr4 57340537 57340537 1 + A G LGG 57340545 + 57340525 57340565 41 ACCAGGCCATGAAAATCCTACAAAAAGCTGAAGGTTGGAAG ACCAGGCCATGAGAATCCTACAAAAAGCTGAAGGTTGGAAG < 41bp 1 0.596141925015775 1 0.347072392702103 experiment 0.80771614996845 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRP72 ENSG00000174780 CDS Human protein_coding chr4:57340545 chr4:57340537 nonsynonymous SNV 0.999 0 13 hm5C_associated_SNPs_25317 0 0 1 0 2 SRP72 chr4:57340557 5'GT 57340557 Upstream 21bp
chr4 1332393 1332393 1 + C T LGG 1332384 + 1332364 1332404 41 CCGCCCATGATGCTGCCCAACGGCTACGTCTACGGCTACAA CCGCCCATGATGCTGCCCAACGGCTACGTTTACGGCTACAA < 41bp 1 0.560692806342728 1 0.224991589784622 experiment 0.878614387314544 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAEA ENSG00000090316 CDS Human protein_coding chr4:1332384 chr4:1332393 synonymous SNV . 0 30 hm5C_associated_SNPs_25318 0 0 1 0 1 MAEA chr4:1332405 5'GT 1332405 Upstream 13bp
chr17 29554597 29554597 1 + T C LGG 29554583 + 29554563 29554603 41 AATGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA AATGGGAACAAGCAACAAAGCTAATCCTTAACTACCCAAAA < 41bp 1 0.12892473629488 1 0.152569055557251 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29554583 chr17:29554597 synonymous SNV . 0 35 hm5C_associated_SNPs_25322 0 0 1 0 2 NF1 chr17:29554541 3'AG 29554541 Downstream 57bp
chr17 29554597 29554597 1 + T C LGG 29554583 + 29554563 29554603 41 AATGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA AATGGGAACAAGCAACAAAGCTAATCCTTAACTACCCAAAA < 41bp 1 0.12892473629488 1 0.152569055557251 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29554583 chr17:29554597 synonymous SNV . 0 35 hm5C_associated_SNPs_25322 0 0 1 0 2 NF1 chr17:29554624 5'GT 29554624 Upstream 28bp
chr8 99168368 99168368 1 + G A LGG 99168348 + 99168328 99168368 41 CTTTCTGCTGTCCCTGGGAGCAGTTAACTCAAGACTGGGAG CTTTCTGCTGTCCCTGGGAGCAGTTAACTCAAGACTGGGAA < 41bp 1 0.197530567899564 1 0.419446766376495 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POP1 ENSG00000104356 CDS Human protein_coding chr8:99168348 chr8:99168368 synonymous SNV . 0 41 hm5C_associated_SNPs_25324 0 0 0 0 1 POP1 chr8:99168278 3'AG 99168278 Downstream 91bp
chr12 21207494 21207494 1 + G A LGG 21207493 + 21207473 21207513 41 GCTTGTACAAGGAAATCTTACGTTTATTTTGTAATTCAAGT GCTTGTACAAGGAAATCTTACATTTATTTTGTAATTCAAGT < 41bp 1 0.0762838258381043 1 0.0545046925544739 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21207493 chr12:21207494 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_25325 0 0 0 0 1 SLCO1B7 chr12:21207570 5'GT 21207570 Upstream 77bp
chr10 104157744 104157744 1 + C T LGG 104157753 + 104157733 104157773 41 CATAGAATCTCCGGGGGCATCAAACCTGAAGATTTCTCGAA CATAGAATCTCTGGGGGCATCAAACCTGAAGATTTCTCGAA < 41bp 1 0.205161979605119 1 0.595626294612885 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104157753 chr10:104157744 nonsynonymous SNV 0.143 4 12 hm5C_associated_SNPs_25326 0 0 1 0 2 NFKB2 chr10:104157738 3'AG 104157738 Downstream 7bp
chr10 104157744 104157744 1 + C T LGG 104157753 + 104157733 104157773 41 CATAGAATCTCCGGGGGCATCAAACCTGAAGATTTCTCGAA CATAGAATCTCTGGGGGCATCAAACCTGAAGATTTCTCGAA < 41bp 1 0.205161979605119 1 0.595626294612885 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104157753 chr10:104157744 nonsynonymous SNV 0.143 4 12 hm5C_associated_SNPs_25326 0 0 1 0 2 NFKB2 chr10:104157842 5'GT 104157842 Upstream 99bp
chr1 220928369 220928369 1 + A G LGG 220928383 + 220928363 220928403 41 TCATTTATGAGAATAACTGCCTGATCTTCAGGGCTCCAGAC TCATTTGTGAGAATAACTGCCTGATCTTCAGGGCTCCAGAC < 41bp 1 0.414486244853669 1 0.074878454208374 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC2 ENSG00000117791 CDS Human protein_coding chr1:220928383 chr1:220928369 nonsynonymous SNV 0.138 0 7 hm5C_associated_SNPs_25327 0 0 1 0 2 MARC2 chr1:220928289 3'AG 220928289 Downstream 81bp
chr1 220928369 220928369 1 + A G LGG 220928383 + 220928363 220928403 41 TCATTTATGAGAATAACTGCCTGATCTTCAGGGCTCCAGAC TCATTTGTGAGAATAACTGCCTGATCTTCAGGGCTCCAGAC < 41bp 1 0.414486244853669 1 0.074878454208374 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC2 ENSG00000117791 CDS Human protein_coding chr1:220928383 chr1:220928369 nonsynonymous SNV 0.138 0 7 hm5C_associated_SNPs_25327 0 0 1 0 2 MARC2 chr1:220928462 5'GT 220928462 Upstream 94bp
chr1 220928369 220928369 1 + A G LGG 220928388 + 220928368 220928408 41 TATGAGAATAACTGCCTGATCTTCAGGGCTCCAGACATGGA TGTGAGAATAACTGCCTGATCTTCAGGGCTCCAGACATGGA < 41bp 1 0.759123090884019 1 0.137164890766144 experiment 0.481753818231963 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC2 ENSG00000117791 CDS Human protein_coding chr1:220928388 chr1:220928369 nonsynonymous SNV 0.138 0 2 hm5C_associated_SNPs_25328 0 0 1 0 2 MARC2 chr1:220928289 3'AG 220928289 Downstream 81bp
chr1 220928369 220928369 1 + A G LGG 220928388 + 220928368 220928408 41 TATGAGAATAACTGCCTGATCTTCAGGGCTCCAGACATGGA TGTGAGAATAACTGCCTGATCTTCAGGGCTCCAGACATGGA < 41bp 1 0.759123090884019 1 0.137164890766144 experiment 0.481753818231963 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC2 ENSG00000117791 CDS Human protein_coding chr1:220928388 chr1:220928369 nonsynonymous SNV 0.138 0 2 hm5C_associated_SNPs_25328 0 0 1 0 2 MARC2 chr1:220928462 5'GT 220928462 Upstream 94bp
chrX 48372938 48372938 1 + A C LGG 48372950 + 48372930 48372970 41 AGCCACTGAATGTGGAGCTGCCTCGGTCAATGGTGGAAGTT AGCCACTGCATGTGGAGCTGCCTCGGTCAATGGTGGAAGTT < 41bp 1 0.0905701871786225 1 0.102214723825455 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PORCN ENSG00000102312 CDS Human protein_coding chrX:48372950 chrX:48372938 nonsynonymous SNV 0.960 1 9 hm5C_associated_SNPs_25329 0 0 0 0 2 PORCN chrX:48372913 3'AG 48372913 Downstream 26bp
chrX 48372938 48372938 1 + A C LGG 48372950 + 48372930 48372970 41 AGCCACTGAATGTGGAGCTGCCTCGGTCAATGGTGGAAGTT AGCCACTGCATGTGGAGCTGCCTCGGTCAATGGTGGAAGTT < 41bp 1 0.0905701871786225 1 0.102214723825455 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PORCN ENSG00000102312 CDS Human protein_coding chrX:48372950 chrX:48372938 nonsynonymous SNV 0.960 1 9 hm5C_associated_SNPs_25329 0 0 0 0 2 PORCN chrX:48373013 5'GT 48373013 Upstream 76bp
chr18 13095650 13095650 1 + G T LGG 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.245721152103175 1 0.168605268001556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095650 stopgain 0.029 1 18 hm5C_associated_SNPs_25330 0 0 1 12 1 CEP192 chr18:13095680 5'GT 13095680 Upstream 31bp
chr18 13095650 13095650 1 + G T LGG 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.58050774477014 1 0.233888477087021 experiment 0.83898451045972 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095650 stopgain 0.029 1 16 hm5C_associated_SNPs_25331 0 0 1 12 1 CEP192 chr18:13095680 5'GT 13095680 Upstream 31bp
chrX 41075235 41075235 1 + A T LGG 41075229 + 41075209 41075249 41 CTAAAGCGATTTGACTATGACTGGGAAAGAGAATGTGCAAT CTAAAGCGATTTGACTATGACTGGGATAGAGAATGTGCAAT < 41bp 1 0.383171982054522 1 0.0642364025115967 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41075229 chrX:41075235 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_25337 0 0 1 0 1 USP9X chrX:41075152 3'AG 41075152 Downstream 84bp
chr18 13056632 13056632 1 + C A LGG 13056650 + 13056630 13056670 41 TCCTGTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCAT TCATGTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCAT < 41bp 1 0.104419004983975 1 0.24454927444458 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056650 chr18:13056632 nonsynonymous SNV 0.030 3 3 hm5C_associated_SNPs_25338 0 0 1 0 1 CEP192 chr18:13056697 5'GT 13056697 Upstream 66bp
chr5 173378897 173378897 1 + G A LGG 173378893 + 173378873 173378913 41 ATGGTTCACAGCCACTTGACCCACGAAAAACTATATTTGTT ATGGTTCACAGCCACTTGACCCACAAAAAACTATATTTGTT < 41bp 1 0.258175637715614 1 0.157445728778839 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173378893 chr5:173378897 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_25344 0 0 1 0 2 CPEB4 chr5:173378827 3'AG 173378827 Downstream 71bp
chr5 173378897 173378897 1 + G A LGG 173378893 + 173378873 173378913 41 ATGGTTCACAGCCACTTGACCCACGAAAAACTATATTTGTT ATGGTTCACAGCCACTTGACCCACAAAAAACTATATTTGTT < 41bp 1 0.258175637715614 1 0.157445728778839 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173378893 chr5:173378897 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_25344 0 0 1 0 2 CPEB4 chr5:173378941 5'GT 173378941 Upstream 45bp
chr6 30889947 30889947 1 + C A LGG 30889943 + 30889923 30889963 41 TCACTTTTGGAAACGGGCAGCGACCTTCTGCTGTTCTGGGT TCACTTTTGGAAACGGGCAGCGACATTCTGCTGTTCTGGGT < 41bp 1 0.550087259788346 1 0.313961923122406 experiment 0.899825480423308 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VARS2 ENSG00000137411 CDS Human protein_coding chr6:30889943 chr6:30889947 nonsynonymous SNV 0.749 1 25 hm5C_associated_SNPs_25345 0 0 1 0 2 VARS2 chr6:30889893 3'AG 30889893 Downstream 55bp
chr6 30889947 30889947 1 + C A LGG 30889943 + 30889923 30889963 41 TCACTTTTGGAAACGGGCAGCGACCTTCTGCTGTTCTGGGT TCACTTTTGGAAACGGGCAGCGACATTCTGCTGTTCTGGGT < 41bp 1 0.550087259788346 1 0.313961923122406 experiment 0.899825480423308 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VARS2 ENSG00000137411 CDS Human protein_coding chr6:30889943 chr6:30889947 nonsynonymous SNV 0.749 1 25 hm5C_associated_SNPs_25345 0 0 1 0 2 VARS2 chr6:30890018 5'GT 30890018 Upstream 72bp
chr11 70275272 70275272 1 + G A LGG 70275262 + 70275242 70275282 41 GGAGAGAGCCCAGCGGATGGCCAAGGAGCGGCAGGAGCAGG GGAGAGAGCCCAGCGGATGGCCAAGGAGCGACAGGAGCAGG < 41bp 1 0.480722762823409 1 0.449950158596039 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70275262 chr11:70275272 synonymous SNV . 0 31 hm5C_associated_SNPs_25346 0 0 1 0 1 CTTN chr11:70275305 5'GT 70275305 Upstream 34bp
chr1 87208030 87208030 1 + C A LGG 87208023 + 87208003 87208043 41 ATCACCTCTCCTTCCAACCTCAGTGACCTTAAGGAGTGTAG ATCACCTCTCCTTCCAACCTCAGTGACATTAAGGAGTGTAG < 41bp 1 0.305514326398376 1 0.32854700088501 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3GLB1 ENSG00000097033 CDS Human protein_coding chr1:87208023 chr1:87208030 nonsynonymous SNV 0.902 0 28 hm5C_associated_SNPs_25347 0 0 1 0 1 SH3GLB1 chr1:87208119 5'GT 87208119 Upstream 90bp
chr19 13054427 13054427 1 + C T LGG 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTGAGGAGTTTGGCAACGAGATGTGGGGCGTAAC < 41bp 1 0.615571945174222 1 0.637831568717957 experiment 0.768856109651556 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054427 nonsynonymous SNV 0.964 2 29 hm5C_associated_SNPs_25351 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 77bp
chr19 13054427 13054427 1 + C T LGG 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTGAGGAGTTTGGCAACGAGATGTGGGGCGTAAC < 41bp 1 0.615571945174222 1 0.637831568717957 experiment 0.768856109651556 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054427 nonsynonymous SNV 0.964 2 29 hm5C_associated_SNPs_25351 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 17bp
chr9 138662884 138662884 1 + C T LGG 138662890 + 138662870 138662910 41 GGGCCTTCTCGGGGCAGGGGCTGCACGAGGGTCCGGCCCGC GGGCCTTCTCGGGGTAGGGGCTGCACGAGGGTCCGGCCCGC < 41bp 1 0.711114789427667 1 0.773177266120911 experiment 0.577770421144666 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control KCNT1 ENSG00000107147 CDS Human protein_coding chr9:138662890 chr9:138662884 stopgain 0.092 0 15 hm5C_associated_SNPs_25352 0 0 0 0 1 KCNT1 chr9:138662941 5'GT 138662941 Upstream 58bp
chr19 10794150 10794150 1 + G A LGG 10794136 + 10794116 10794156 41 TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCACCCTTG < 41bp 1 0.381565438494161 1 0.130291700363159 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794136 chr19:10794150 nonsynonymous SNV 0.179 0 35 hm5C_associated_SNPs_25353 0 0 1 0 1 ILF3 chr19:10794218 5'GT 10794218 Upstream 69bp
chr19 10794150 10794150 1 + G A LGG 10794142 + 10794122 10794162 41 AGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTGATGCCA AGAAAAGCTTTTCCCTGACACCCCTCTCACCCTTGATGCCA < 41bp 1 0.190193993464495 1 0.0353526771068573 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794142 chr19:10794150 nonsynonymous SNV 0.179 0 29 hm5C_associated_SNPs_25354 0 0 1 0 1 ILF3 chr19:10794218 5'GT 10794218 Upstream 69bp
chr10 134165236 134165236 1 + C A LGG 134165250 + 134165230 134165270 41 AGCAGGCTCTGATGGAGCAGCAGAGACGGTGAGTCCACACA AGCAGGATCTGATGGAGCAGCAGAGACGGTGAGTCCACACA < 41bp 1 0.701482226114345 1 0.603934824466705 experiment 0.59703554777131 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRRC27 ENSG00000148814 CDS Human protein_coding chr10:134165250 chr10:134165236 nonsynonymous SNV 0.007 2 7 hm5C_associated_SNPs_25355 0 0 0 0 1 LRRC27 chr10:134165257 5'GT 134165257 Upstream 22bp
chr16 4498835 4498835 1 + G T LGG 4498845 + 4498825 4498865 41 TCCACATCAAGATACGAGTTCCAAAGTAAGTGCCCCCTAGG TCCACATCAATATACGAGTTCCAAAGTAAGTGCCCCCTAGG < 41bp 1 0.370040030303863 1 0.105063170194626 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJA3 ENSG00000103423 CDS Human protein_coding chr16:4498845 chr16:4498835 nonsynonymous SNV 0.998 4 11 hm5C_associated_SNPs_25356 0 0 1 0 1 DNAJA3 chr16:4498849 5'GT 4498849 Upstream 15bp
chr19 13051399 13051399 1 + G A LGG 13051384 + 13051364 13051404 41 AAGCCCGAGCATATCCCTGACCCTGATGCTAAGAAGCCCGA AAGCCCGAGCATATCCCTGACCCTGATGCTAAGAAACCCGA < 41bp 1 0.136474618984234 1 0.0409500002861023 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051384 chr19:13051399 synonymous SNV . 0 36 hm5C_associated_SNPs_25358 0 0 1 0 2 CALR chr19:13051355 3'AG 13051355 Downstream 45bp
chr19 13051399 13051399 1 + G A LGG 13051384 + 13051364 13051404 41 AAGCCCGAGCATATCCCTGACCCTGATGCTAAGAAGCCCGA AAGCCCGAGCATATCCCTGACCCTGATGCTAAGAAACCCGA < 41bp 1 0.136474618984234 1 0.0409500002861023 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051384 chr19:13051399 synonymous SNV . 0 36 hm5C_associated_SNPs_25358 0 0 1 0 2 CALR chr19:13051468 5'GT 13051468 Upstream 70bp
chr19 13051399 13051399 1 + G A LGG 13051392 + 13051372 13051412 41 GCATATCCCTGACCCTGATGCTAAGAAGCCCGAGGACTGGG GCATATCCCTGACCCTGATGCTAAGAAACCCGAGGACTGGG < 41bp 1 0.440686737423767 1 0.1988725066185 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051392 chr19:13051399 synonymous SNV . 0 28 hm5C_associated_SNPs_25359 0 0 1 0 2 CALR chr19:13051355 3'AG 13051355 Downstream 45bp
chr19 13051399 13051399 1 + G A LGG 13051392 + 13051372 13051412 41 GCATATCCCTGACCCTGATGCTAAGAAGCCCGAGGACTGGG GCATATCCCTGACCCTGATGCTAAGAAACCCGAGGACTGGG < 41bp 1 0.440686737423767 1 0.1988725066185 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051392 chr19:13051399 synonymous SNV . 0 28 hm5C_associated_SNPs_25359 0 0 1 0 2 CALR chr19:13051468 5'GT 13051468 Upstream 70bp
chr19 13051399 13051399 1 + G A LGG 13051402 + 13051382 13051422 41 GACCCTGATGCTAAGAAGCCCGAGGACTGGGATGAAGAGAT GACCCTGATGCTAAGAAACCCGAGGACTGGGATGAAGAGAT < 41bp 1 0.676221581708926 1 0.678125381469727 experiment 0.647556836582148 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALR ENSG00000179218 CDS Human protein_coding chr19:13051402 chr19:13051399 synonymous SNV . 0 18 hm5C_associated_SNPs_25360 0 0 1 0 2 CALR chr19:13051355 3'AG 13051355 Downstream 45bp
chr19 13051399 13051399 1 + G A LGG 13051402 + 13051382 13051422 41 GACCCTGATGCTAAGAAGCCCGAGGACTGGGATGAAGAGAT GACCCTGATGCTAAGAAACCCGAGGACTGGGATGAAGAGAT < 41bp 1 0.676221581708926 1 0.678125381469727 experiment 0.647556836582148 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALR ENSG00000179218 CDS Human protein_coding chr19:13051402 chr19:13051399 synonymous SNV . 0 18 hm5C_associated_SNPs_25360 0 0 1 0 2 CALR chr19:13051468 5'GT 13051468 Upstream 70bp
chr4 154318427 154318427 1 + G A LGG 154318425 + 154318405 154318445 41 CACTTCGAGACCAAAGGGAACAGCTAAAGGCAGAAGTAGAA CACTTCGAGACCAAAGGGAACAACTAAAGGCAGAAGTAGAA < 41bp 1 0.183047273491074 1 0.167833685874939 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MND1 ENSG00000121211 CDS Human protein_coding chr4:154318425 chr4:154318427 synonymous SNV . 0 23 hm5C_associated_SNPs_25362 0 0 1 0 2 MND1 chr4:154318371 3'AG 154318371 Downstream 57bp
chr4 154318427 154318427 1 + G A LGG 154318425 + 154318405 154318445 41 CACTTCGAGACCAAAGGGAACAGCTAAAGGCAGAAGTAGAA CACTTCGAGACCAAAGGGAACAACTAAAGGCAGAAGTAGAA < 41bp 1 0.183047273491074 1 0.167833685874939 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MND1 ENSG00000121211 CDS Human protein_coding chr4:154318425 chr4:154318427 synonymous SNV . 0 23 hm5C_associated_SNPs_25362 0 0 1 0 2 MND1 chr4:154318485 5'GT 154318485 Upstream 59bp
chr22 47290699 47290699 1 + G A LGG 47290696 + 47290676 47290716 41 CCAGATCCACATAGACATCCCTCGCATGAGCCCTGAAGCGT CCAGATCCACATAGACATCCCTCACATGAGCCCTGAAGCGT < 41bp 1 0.131541224600773 1 0.067976325750351 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBC1D22A ENSG00000054611 CDS Human protein_coding chr22:47290696 chr22:47290699 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_25363 0 0 1 0 2 TBC1D22A chr22:47290680 3'AG 47290680 Downstream 20bp
chr22 47290699 47290699 1 + G A LGG 47290696 + 47290676 47290716 41 CCAGATCCACATAGACATCCCTCGCATGAGCCCTGAAGCGT CCAGATCCACATAGACATCCCTCACATGAGCCCTGAAGCGT < 41bp 1 0.131541224600773 1 0.067976325750351 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBC1D22A ENSG00000054611 CDS Human protein_coding chr22:47290696 chr22:47290699 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_25363 0 0 1 0 2 TBC1D22A chr22:47290742 5'GT 47290742 Upstream 44bp
chr9 18721614 18721614 1 + C T LGG 18721629 + 18721609 18721649 41 GCCGCCGGCCCCCACAGCTCCTGAAGTCCTGCAATTTGGAT GCCGCTGGCCCCCACAGCTCCTGAAGTCCTGCAATTTGGAT < 41bp 1 0.416027759667055 1 0.419430732727051 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18721629 chr9:18721614 nonsynonymous SNV 0.998 3 6 hm5C_associated_SNPs_25364 0 0 0 0 2 ADAMTSL1 chr9:18721534 3'AG 18721534 Downstream 81bp
chr9 18721614 18721614 1 + C T LGG 18721629 + 18721609 18721649 41 GCCGCCGGCCCCCACAGCTCCTGAAGTCCTGCAATTTGGAT GCCGCTGGCCCCCACAGCTCCTGAAGTCCTGCAATTTGGAT < 41bp 1 0.416027759667055 1 0.419430732727051 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18721629 chr9:18721614 nonsynonymous SNV 0.998 3 6 hm5C_associated_SNPs_25364 0 0 0 0 2 ADAMTSL1 chr9:18721663 5'GT 18721663 Upstream 50bp
chr8 21856613 21856613 1 + C A LGG 21856607 + 21856587 21856627 41 GACATGTCTACTCAGGCAATCGCATCCTGACACTAGGAGAG GACATGTCTACTCAGGCAATCGCATCATGACACTAGGAGAG < 41bp 1 0.20944449237411 1 0.64108407497406 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21856607 chr8:21856613 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_25365 0 0 1 0 1 XPO7 chr8:21856602 3'AG 21856602 Downstream 12bp
chr11 118944660 118944660 1 + C T LGG 118944659 + 118944639 118944679 41 GGGGCTGTCCAGCAATATATCCGGTCAGTCTGGAGGCACTT GGGGCTGTCCAGCAATATATCTGGTCAGTCTGGAGGCACTT < 41bp 1 0.63815161444759 1 0.21465677022934 experiment 0.72369677110482 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VPS11 ENSG00000160695 CDS Human protein_coding chr11:118944659 chr11:118944660 stopgain 0.983 0 22 hm5C_associated_SNPs_25366 0 0 1 0 1 VPS11 chr11:118944661 5'GT 118944661 Upstream 2bp
chr18 46284702 46284702 1 + C T LGG 46284696 + 46284676 46284716 41 AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGCGG AACGTAAAGACAGTATTCTTCCCGAGTGCATCGGGGAGCGG < 41bp 1 0.558435900011103 1 0.127131730318069 experiment 0.883128199977793 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284696 chr18:46284702 nonsynonymous SNV 0.017 2 27 hm5C_associated_SNPs_25367 0 0 0 0 2 CTIF chr18:46284776 5'GT 46284776 Upstream 75bp
chr18 46284702 46284702 1 + C T LGG 46284696 + 46284676 46284716 41 AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGCGG AACGTAAAGACAGTATTCTTCCCGAGTGCATCGGGGAGCGG < 41bp 1 0.558435900011103 1 0.127131730318069 experiment 0.883128199977793 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284696 chr18:46284702 nonsynonymous SNV 0.017 2 27 hm5C_associated_SNPs_25367 0 0 0 0 2 CTIF chr18:46284782 5'GT 46284782 Upstream 81bp
chr7 128119311 128119311 1 + C A LGG 128119323 + 128119303 128119343 41 CGAATTCCCTGAGCTGGCACCTAGCCAAAATCAAAATCATT CGAATTCCATGAGCTGGCACCTAGCCAAAATCAAAATCATT < 41bp 1 0.121185460770829 1 0.170093446969986 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control METTL2B ENSG00000165055 CDS Human protein_coding chr7:128119323 chr7:128119311 nonsynonymous SNV 0.990 4 9 hm5C_associated_SNPs_25368 0 0 1 0 1 METTL2B chr7:128119212 3'AG 128119212 Downstream 100bp
chr7 97833470 97833470 1 + C A LGG 97833471 + 97833451 97833491 41 CCAGCTTTTCCCTCACACACCTGACCGACTCGGACATCGAG CCAGCTTTTCCCTCACACAACTGACCGACTCGGACATCGAG < 41bp 1 0.157581618407846 1 0.0538173913955688 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97833471 chr7:97833470 nonsynonymous SNV 0.389 5 20 hm5C_associated_SNPs_25369 0 0 1 0 1 LMTK2 chr7:97833498 5'GT 97833498 Upstream 29bp
chr2 220149426 220149426 1 + C T LGG 220149415 + 220149395 220149435 41 CGCGAGCAGCAGCCGTCAGTCACTTCCAGGTCTGGGGGCAC CGCGAGCAGCAGCCGTCAGTCACTTCCAGGTTTGGGGGCAC < 41bp 1 0.51767921976397 1 0.657625555992126 experiment 0.964641560472059 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220149415 chr2:220149426 nonsynonymous SNV 0.073 1 32 hm5C_associated_SNPs_25371 0 0 1 0 1 DNAJB2 chr2:220149354 3'AG 220149354 Downstream 73bp
chr9 71851948 71851948 1 + G T LGG 71851967 + 71851947 71851987 41 AGGTCTGGGGTGAAGAAGAACCTGAGGAAAAGTCGGGAAGA ATGTCTGGGGTGAAGAAGAACCTGAGGAAAAGTCGGGAAGA < 41bp 1 0.458436293353157 1 0.192907899618149 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TJP2 ENSG00000119139 CDS Human protein_coding chr9:71851967 chr9:71851948 nonsynonymous SNV 0.896 4 2 hm5C_associated_SNPs_25372 0 0 1 0 1 TJP2 chr9:71851865 3'AG 71851865 Downstream 84bp
chr9 71851948 71851948 1 + G T LGG 71851968 + 71851948 71851988 41 GGTCTGGGGTGAAGAAGAACCTGAGGAAAAGTCGGGAAGAC TGTCTGGGGTGAAGAAGAACCTGAGGAAAAGTCGGGAAGAC < 41bp 1 0.746957965317839 1 0.668344497680664 experiment 0.506084069364323 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TJP2 ENSG00000119139 CDS Human protein_coding chr9:71851968 chr9:71851948 nonsynonymous SNV 0.896 4 1 hm5C_associated_SNPs_25373 0 0 1 0 1 TJP2 chr9:71851865 3'AG 71851865 Downstream 84bp
chr2 220366664 220366664 1 + G A LGG 220366650 + 220366630 220366670 41 CCAGATCCTGGCTGGGAGCCCCGAGGCATTCTTCGTGCTCA CCAGATCCTGGCTGGGAGCCCCGAGGCATTCTTCATGCTCA < 41bp 1 0.463698978704555 1 0.366317808628082 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GMPPA ENSG00000144591 CDS Human protein_coding chr2:220366650 chr2:220366664 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_25374 0 0 1 0 2 GMPPA chr2:220366573 3'AG 220366573 Downstream 92bp
chr2 220366664 220366664 1 + G A LGG 220366650 + 220366630 220366670 41 CCAGATCCTGGCTGGGAGCCCCGAGGCATTCTTCGTGCTCA CCAGATCCTGGCTGGGAGCCCCGAGGCATTCTTCATGCTCA < 41bp 1 0.463698978704555 1 0.366317808628082 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GMPPA ENSG00000144591 CDS Human protein_coding chr2:220366650 chr2:220366664 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_25374 0 0 1 0 2 GMPPA chr2:220366759 5'GT 220366759 Upstream 96bp
chrX 70519876 70519876 1 + C T LGG 70519864 + 70519844 70519884 41 GGGCAATTGGTGGAACTCCTCCTGCATTCAACCGTGCAGCT GGGCAATTGGTGGAACTCCTCCTGCATTCAACTGTGCAGCT < 41bp 1 0.245503947400791 1 0.378761261701584 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70519864 chrX:70519876 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_25376 0 0 1 0 1 NONO chrX:70519792 3'AG 70519792 Downstream 85bp
chr9 110086280 110086280 1 + G T LGG 110086266 + 110086246 110086286 41 TGCTTCCAGCGTTACTACAGCAGATAGGTCGAGAGAATCCT TGCTTCCAGCGTTACTACAGCAGATAGGTCGAGATAATCCT < 41bp 1 0.251459949839561 1 0.140137135982513 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD23B ENSG00000119318 CDS Human protein_coding chr9:110086266 chr9:110086280 nonsynonymous SNV 0.998 1 35 hm5C_associated_SNPs_25379 0 0 1 0 1 RAD23B chr9:110086298 5'GT 110086298 Upstream 19bp
chr1 200730022 200730022 1 + A G LGG 200730036 + 200730016 200730056 41 CCAGGAACACATCAAACCACCTGTTGTTAATTTGCTTCTAT CCAGGAGCACATCAAACCACCTGTTGTTAATTTGCTTCTAT < 41bp 1 0.175850005262905 1 0.0600105226039886 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200730036 chr1:200730022 synonymous SNV . 0 7 hm5C_associated_SNPs_25380 0 0 1 0 1 CAMSAP2 chr1:200729967 3'AG 200729967 Downstream 56bp
chr20 62374307 62374307 1 + C T LGG 62374321 + 62374301 62374341 41 AGCCTGCCGCTGGAAGAAAGCCTGCCAGCGGTTCCTGGACT AGCCTGTCGCTGGAAGAAAGCCTGCCAGCGGTTCCTGGACT < 41bp 1 0.141565841198711 1 0.10368749499321 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62374321 chr20:62374307 synonymous SNV . 0 7 hm5C_associated_SNPs_25381 0 0 1 0 1 SLC2A4RG chr20:62374232 3'AG 62374232 Downstream 76bp
chr9 131846995 131846995 1 + T C LGG 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTCAGCCCTGTATCTGTCATCGTCGGTTTCGTGACCCT < 41bp 1 0.450990083183784 1 0.359122693538666 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131846995 nonsynonymous SNV 0.896 1 17 hm5C_associated_SNPs_25382 0 0 1 0 2 DOLPP1 chr9:131846947 3'AG 131846947 Downstream 49bp
chr9 131846995 131846995 1 + T C LGG 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTCAGCCCTGTATCTGTCATCGTCGGTTTCGTGACCCT < 41bp 1 0.450990083183784 1 0.359122693538666 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131846995 nonsynonymous SNV 0.896 1 17 hm5C_associated_SNPs_25382 0 0 1 0 2 DOLPP1 chr9:131847047 5'GT 131847047 Upstream 53bp
chr2 233681620 233681620 1 + C T LGG 233681615 + 233681595 233681635 41 AAGAGAGGCAGAAATGAGGGCAAAACGGGAAGAGGAAGAGC AAGAGAGGCAGAAATGAGGGCAAAATGGGAAGAGGAAGAGC < 41bp 1 0.334593429080348 1 0.418675720691681 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233681615 chr2:233681620 nonsynonymous SNV 0.991 4 26 hm5C_associated_SNPs_25384 0 0 1 0 1 GIGYF2 chr2:233681581 3'AG 233681581 Downstream 40bp
chr13 113729378 113729378 1 + G A LGG 113729386 + 113729366 113729406 41 AACAAGCACTACGCGGTAGACTCCATCCGCCCAAAGTGCCA AACAAGCACTACACGGTAGACTCCATCCGCCCAAAGTGCCA < 41bp 1 0.609431665983223 1 0.812180399894714 experiment 0.781136668033553 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113729386 chr13:113729378 nonsynonymous SNV 0.570 4 13 hm5C_associated_SNPs_25388 0 0 1 0 1 MCF2L chr13:113729312 3'AG 113729312 Downstream 67bp
chr14 97002275 97002275 1 + G A LGG 97002283 + 97002263 97002303 41 ATACCCACAACAGAACTCCACGTACAATGTGTCCGTTTCAA ATACCCACAACAAAACTCCACGTACAATGTGTCCGTTTCAA < 41bp 1 0.0737535199457158 1 0.0700874924659729 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97002283 chr14:97002275 synonymous SNV . 0 13 hm5C_associated_SNPs_25399 0 0 1 0 2 PAPOLA chr14:97002216 3'AG 97002216 Downstream 60bp
chr14 97002275 97002275 1 + G A LGG 97002283 + 97002263 97002303 41 ATACCCACAACAGAACTCCACGTACAATGTGTCCGTTTCAA ATACCCACAACAAAACTCCACGTACAATGTGTCCGTTTCAA < 41bp 1 0.0737535199457158 1 0.0700874924659729 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97002283 chr14:97002275 synonymous SNV . 0 13 hm5C_associated_SNPs_25399 0 0 1 0 2 PAPOLA chr14:97002336 5'GT 97002336 Upstream 62bp
chr8 145139388 145139388 1 + C T LGG 145139396 + 145139376 145139416 41 CTCATGGTTCTGCGGCAGGCCTCCGGCCGCCCCCACGGCTC CTCATGGTTCTGTGGCAGGCCTCCGGCCGCCCCCACGGCTC < 41bp 1 0.774767388787135 1 0.814286470413208 experiment 0.45046522242573 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139396 chr8:145139388 nonsynonymous SNV 0.985 2 13 hm5C_associated_SNPs_25400 0 0 1 0 1 GPAA1 chr8:145139316 3'AG 145139316 Downstream 73bp
chr19 39948334 39948334 1 + G T LGG 39948343 + 39948323 39948363 41 GATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA GATGAGTATGATGACGAGGACCAGTGGGAGGATGGAGCAGA < 41bp 1 0.221216916258514 1 0.183018505573273 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948343 chr19:39948334 nonsynonymous SNV 0.998 1 12 hm5C_associated_SNPs_25401 0 0 1 0 2 SUPT5H chr19:39948315 3'AG 39948315 Downstream 20bp
chr19 39948334 39948334 1 + G T LGG 39948343 + 39948323 39948363 41 GATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA GATGAGTATGATGACGAGGACCAGTGGGAGGATGGAGCAGA < 41bp 1 0.221216916258514 1 0.183018505573273 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948343 chr19:39948334 nonsynonymous SNV 0.998 1 12 hm5C_associated_SNPs_25401 0 0 1 0 2 SUPT5H chr19:39948380 5'GT 39948380 Upstream 47bp
chr19 39948334 39948334 1 + G T LGG 39948344 + 39948324 39948364 41 ATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGAG ATGAGTATGATGACGAGGACCAGTGGGAGGATGGAGCAGAG < 41bp 1 0.495091471639613 1 0.234329462051392 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948344 chr19:39948334 nonsynonymous SNV 0.998 1 11 hm5C_associated_SNPs_25402 0 0 1 0 2 SUPT5H chr19:39948315 3'AG 39948315 Downstream 20bp
chr19 39948334 39948334 1 + G T LGG 39948344 + 39948324 39948364 41 ATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGAG ATGAGTATGATGACGAGGACCAGTGGGAGGATGGAGCAGAG < 41bp 1 0.495091471639613 1 0.234329462051392 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948344 chr19:39948334 nonsynonymous SNV 0.998 1 11 hm5C_associated_SNPs_25402 0 0 1 0 2 SUPT5H chr19:39948380 5'GT 39948380 Upstream 47bp
chr12 62688032 62688032 1 + G T LGG 62688042 + 62688022 62688062 41 ACAAATACCAGATGGGAGATCAAAATGTGTATCCTGGACCC ACAAATACCATATGGGAGATCAAAATGTGTATCCTGGACCC < 41bp 1 0.671414168493595 1 0.675409495830536 experiment 0.657171663012811 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control USP15 ENSG00000135655 CDS Human protein_coding chr12:62688042 chr12:62688032 nonsynonymous SNV 0.999 1 11 hm5C_associated_SNPs_25405 0 0 1 0 2 USP15 chr12:62687960 3'AG 62687960 Downstream 73bp
chr12 62688032 62688032 1 + G T LGG 62688042 + 62688022 62688062 41 ACAAATACCAGATGGGAGATCAAAATGTGTATCCTGGACCC ACAAATACCATATGGGAGATCAAAATGTGTATCCTGGACCC < 41bp 1 0.671414168493595 1 0.675409495830536 experiment 0.657171663012811 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control USP15 ENSG00000135655 CDS Human protein_coding chr12:62688042 chr12:62688032 nonsynonymous SNV 0.999 1 11 hm5C_associated_SNPs_25405 0 0 1 0 2 USP15 chr12:62688087 5'GT 62688087 Upstream 56bp
chr17 48757159 48757159 1 + G T LGG 48757176 + 48757156 48757196 41 CAGGTGACATTTGCTCTGAACTGGATGATACGAATGATGTC CAGTTGACATTTGCTCTGAACTGGATGATACGAATGATGTC < 41bp 1 0.576599569789777 1 0.35757777094841 experiment 0.846800860420447 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48757176 chr17:48757159 nonsynonymous SNV 0.691 3 4 hm5C_associated_SNPs_25406 0 0 0 0 1 ABCC3 chr17:48757159 3'AG 48757159 Downstream 1bp
chr10 71016832 71016832 1 + A T LGG 71016829 + 71016809 71016849 41 GACCAAAGGTTTCAAGGCCACTGACTGTGAAGGGGAGGACG GACCAAAGGTTTCAAGGCCACTGTCTGTGAAGGGGAGGACG < 41bp 1 0.179324168616533 1 0.0700871348381042 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71016829 chr10:71016832 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_25407 0 0 0 0 2 HKDC1 chr10:71016792 3'AG 71016792 Downstream 41bp
chr10 71016832 71016832 1 + A T LGG 71016829 + 71016809 71016849 41 GACCAAAGGTTTCAAGGCCACTGACTGTGAAGGGGAGGACG GACCAAAGGTTTCAAGGCCACTGTCTGTGAAGGGGAGGACG < 41bp 1 0.179324168616533 1 0.0700871348381042 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71016829 chr10:71016832 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_25407 0 0 0 0 2 HKDC1 chr10:71016887 5'GT 71016887 Upstream 56bp
chr22 35726441 35726441 1 + C T LGG 35726424 + 35726404 35726444 41 ATGAGCAGCTGACAGAGGAGCTGCTCATCGTCAATGACAAT ATGAGCAGCTGACAGAGGAGCTGCTCATCGTCAATGATAAT < 41bp 1 0.122158473143563 1 0.0412736833095551 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1 ENSG00000100284 CDS Human protein_coding chr22:35726424 chr22:35726441 synonymous SNV . 0 38 hm5C_associated_SNPs_25408 0 0 1 2 1 TOM1 chr22:35726473 5'GT 35726473 Upstream 33bp
chr2 74683276 74683276 1 + A C LGG 74683272 + 74683252 74683292 41 CTCTCCACTTCGGGACCTATCAGGAGGGTTAGGGGGTCAGG CTCTCCACTTCGGGACCTATCAGGCGGGTTAGGGGGTCAGG < 41bp 1 0.704846429980733 1 0.856102228164673 experiment 0.590307140038534 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control INO80B ENSG00000115274 CDS Human protein_coding chr2:74683272 chr2:74683276 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_25409 0 0 1 0 2 INO80B chr2:74683230 3'AG 74683230 Downstream 47bp
chr2 74683276 74683276 1 + A C LGG 74683272 + 74683252 74683292 41 CTCTCCACTTCGGGACCTATCAGGAGGGTTAGGGGGTCAGG CTCTCCACTTCGGGACCTATCAGGCGGGTTAGGGGGTCAGG < 41bp 1 0.704846429980733 1 0.856102228164673 experiment 0.590307140038534 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control INO80B ENSG00000115274 CDS Human protein_coding chr2:74683272 chr2:74683276 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_25409 0 0 1 0 2 INO80B chr2:74683275 3'AG 74683275 Downstream 2bp
chr19 50302934 50302934 1 + G A LGG 50302928 + 50302908 50302948 41 GGCAGCGGGCGGCTGACCTCCTCTACGCCATGTGTGACCGG GGCAGCGGGCGGCTGACCTCCTCTACACCATGTGTGACCGG < 41bp 1 0.643921989597348 1 0.848938941955566 experiment 0.712156020805303 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50302928 chr19:50302934 nonsynonymous SNV 0.992 4 27 hm5C_associated_SNPs_25410 0 0 1 0 2 AP2A1 chr19:50302886 3'AG 50302886 Downstream 49bp
chr19 50302934 50302934 1 + G A LGG 50302928 + 50302908 50302948 41 GGCAGCGGGCGGCTGACCTCCTCTACGCCATGTGTGACCGG GGCAGCGGGCGGCTGACCTCCTCTACACCATGTGTGACCGG < 41bp 1 0.643921989597348 1 0.848938941955566 experiment 0.712156020805303 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50302928 chr19:50302934 nonsynonymous SNV 0.992 4 27 hm5C_associated_SNPs_25410 0 0 1 0 2 AP2A1 chr19:50303023 5'GT 50303023 Upstream 90bp
chr2 100013244 100013244 1 + C T LGG 100013261 + 100013241 100013281 41 CTGCAAGATAAAAATCCTCCCTCAGTACATTTTTAATTCTC CTGTAAGATAAAAATCCTCCCTCAGTACATTTTTAATTCTC < 41bp 1 0.52557651186367 1 0.0615257024765015 experiment 0.948846976272659 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:100013261 chr2:100013244 synonymous SNV . 0 4 hm5C_associated_SNPs_25412 0 0 1 0 1 EIF5B chr2:100013223 3'AG 100013223 Downstream 22bp
chr1 117626696 117626696 1 + C T LGG 117626677 + 117626657 117626697 41 TCCCATGGAACACTAATCATCTGTCCTGCCTCCCTGATCCA TCCCATGGAACACTAATCATCTGTCCTGCCTCCCTGATCTA < 41bp 1 0.157583185412276 1 0.133395105600357 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117626677 chr1:117626696 nonsynonymous SNV 0.999 4 40 hm5C_associated_SNPs_25413 0 0 1 0 1 TTF2 chr1:117626640 3'AG 117626640 Downstream 57bp
chr22 50857842 50857842 1 + G A LGG 50857854 + 50857834 50857874 41 GCTGCCTCGTCAGTGGGACTCAGGTGTTACTCACCTTGCTG GCTGCCTCATCAGTGGGACTCAGGTGTTACTCACCTTGCTG < 41bp 1 0.786776816394734 1 0.810294270515442 experiment 0.426446367210533 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50857854 chr22:50857842 nonsynonymous SNV 0.888 2 9 hm5C_associated_SNPs_25414 0 0 1 0 3 PPP6R2 chr22:50857775 3'AG 50857775 Downstream 68bp
chr22 50857842 50857842 1 + G A LGG 50857854 + 50857834 50857874 41 GCTGCCTCGTCAGTGGGACTCAGGTGTTACTCACCTTGCTG GCTGCCTCATCAGTGGGACTCAGGTGTTACTCACCTTGCTG < 41bp 1 0.786776816394734 1 0.810294270515442 experiment 0.426446367210533 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50857854 chr22:50857842 nonsynonymous SNV 0.888 2 9 hm5C_associated_SNPs_25414 0 0 1 0 3 PPP6R2 chr22:50857778 3'AG 50857778 Downstream 65bp
chr22 50857842 50857842 1 + G A LGG 50857854 + 50857834 50857874 41 GCTGCCTCGTCAGTGGGACTCAGGTGTTACTCACCTTGCTG GCTGCCTCATCAGTGGGACTCAGGTGTTACTCACCTTGCTG < 41bp 1 0.786776816394734 1 0.810294270515442 experiment 0.426446367210533 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50857854 chr22:50857842 nonsynonymous SNV 0.888 2 9 hm5C_associated_SNPs_25414 0 0 1 0 3 PPP6R2 chr22:50857891 5'GT 50857891 Upstream 50bp
chr12 12038938 12038938 1 + C T LGG 12038928 + 12038908 12038948 41 TACTACAAACTAAACATTATCAGGAAGGAGCCAGGACAAAG TACTACAAACTAAACATTATCAGGAAGGAGTCAGGACAAAG < 41bp 1 0.737426415306483 1 0.481536120176315 experiment 0.525147169387034 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ETV6 ENSG00000139083 CDS Human protein_coding chr12:12038928 chr12:12038938 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_25416 0 0 0 0 2 ETV6 chr12:12038860 3'AG 12038860 Downstream 79bp
chr12 12038938 12038938 1 + C T LGG 12038928 + 12038908 12038948 41 TACTACAAACTAAACATTATCAGGAAGGAGCCAGGACAAAG TACTACAAACTAAACATTATCAGGAAGGAGTCAGGACAAAG < 41bp 1 0.737426415306483 1 0.481536120176315 experiment 0.525147169387034 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ETV6 ENSG00000139083 CDS Human protein_coding chr12:12038928 chr12:12038938 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_25416 0 0 0 0 2 ETV6 chr12:12038960 5'GT 12038960 Upstream 23bp
chr19 41120228 41120228 1 + C T LGG 41120209 + 41120189 41120229 41 CCCACATCCGACCACCCGACCTCTCTCCTCAGACGTGGACG CCCACATCCGACCACCCGACCTCTCTCCTCAGACGTGGATG < 41bp 1 0.0278406573123015 1 0.0183580815792084 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41120209 chr19:41120228 synonymous SNV . 0 40 hm5C_associated_SNPs_25417 0 0 1 0 1 LTBP4 chr19:41120221 3'AG 41120221 Downstream 8bp
chr1 6681484 6681484 1 + G A LGG 6681488 + 6681468 6681508 41 CAGATGACGATTCCTGGGACCTCGTGACCTGCTTCTGCATG CAGATGACGATTCCTGAGACCTCGTGACCTGCTTCTGCATG < 41bp 1 0.448054958831787 1 0.0201326906681061 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF13 ENSG00000116273 CDS Human protein_coding chr1:6681488 chr1:6681484 stopgain 1.000 1 17 hm5C_associated_SNPs_25418 0 0 1 0 1 PHF13 chr1:6681471 3'AG 6681471 Downstream 14bp
chr8 145726987 145726987 1 + C T LGG 145727002 + 145726982 145727022 41 TAGACCGGAGTGTCTCCTACCAGCTGAGCCCCCTGGACAGC TAGACTGGAGTGTCTCCTACCAGCTGAGCCCCCTGGACAGC < 41bp 1 0.583609504670433 1 0.549173891544342 experiment 0.832780990659133 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP1R16A ENSG00000160972 CDS Human protein_coding chr8:145727002 chr8:145726987 nonsynonymous SNV 0.619 2 6 hm5C_associated_SNPs_25420 0 0 1 0 1 PPP1R16A chr8:145726903 3'AG 145726903 Downstream 85bp
chr6 42975016 42975016 1 + C T LGG 42975034 + 42975014 42975054 41 CACCCTGGAAGCTGCTTGGCCACATCTCCAGGTACCAGGGC CATCCTGGAAGCTGCTTGGCCACATCTCCAGGTACCAGGGC < 41bp 1 0.40087347823186 1 0.242212921380997 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975034 chr6:42975016 nonsynonymous SNV 0.998 2 3 hm5C_associated_SNPs_25421 0 0 1 0 2 PPP2R5D chr6:42974934 3'AG 42974934 Downstream 83bp
chr6 42975016 42975016 1 + C T LGG 42975034 + 42975014 42975054 41 CACCCTGGAAGCTGCTTGGCCACATCTCCAGGTACCAGGGC CATCCTGGAAGCTGCTTGGCCACATCTCCAGGTACCAGGGC < 41bp 1 0.40087347823186 1 0.242212921380997 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975034 chr6:42975016 nonsynonymous SNV 0.998 2 3 hm5C_associated_SNPs_25421 0 0 1 0 2 PPP2R5D chr6:42975044 5'GT 42975044 Upstream 29bp
chr18 46284706 46284706 1 + T C LGG 46284696 + 46284676 46284716 41 AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGCGG AACGTAAAGACAGTATTCTTCCCGAGCGCACCGGGGAGCGG < 41bp 1 0.543558768299891 1 0.198431521654129 experiment 0.912882463400218 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284696 chr18:46284706 nonsynonymous SNV 0.006 0 31 hm5C_associated_SNPs_25422 0 0 0 0 2 CTIF chr18:46284776 5'GT 46284776 Upstream 71bp
chr18 46284706 46284706 1 + T C LGG 46284696 + 46284676 46284716 41 AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGCGG AACGTAAAGACAGTATTCTTCCCGAGCGCACCGGGGAGCGG < 41bp 1 0.543558768299891 1 0.198431521654129 experiment 0.912882463400218 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284696 chr18:46284706 nonsynonymous SNV 0.006 0 31 hm5C_associated_SNPs_25422 0 0 0 0 2 CTIF chr18:46284782 5'GT 46284782 Upstream 77bp
chr18 56376782 56376782 1 + A G LGG 56376765 + 56376745 56376785 41 AAAATGAATTACCATTAACACATGAGACCAAAAAGCTATAC AAAATGAATTACCATTAACACATGAGACCAAAAAGCTGTAC < 41bp 1 0.684068038843411 1 0.356383293867111 experiment 0.631863922313178 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MALT1 ENSG00000172175 CDS Human protein_coding chr18:56376765 chr18:56376782 synonymous SNV . 0 38 hm5C_associated_SNPs_25423 0 0 1 0 1 MALT1 chr18:56376788 5'GT 56376788 Upstream 7bp
chr15 22940758 22940758 1 + T C LGG 22940756 + 22940736 22940776 41 GCACATCCTCCGGCAGCAGCCCTCAGTACAACATCTGCGAG GCACATCCTCCGGCAGCAGCCCCCAGTACAACATCTGCGAG < 41bp 1 0.662577255577754 1 0.475522994995117 experiment 0.674845488844492 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22940756 chr15:22940758 synonymous SNV . 0 23 hm5C_associated_SNPs_25424 0 0 1 0 2 CYFIP1 chr15:22940728 3'AG 22940728 Downstream 31bp
chr15 22940758 22940758 1 + T C LGG 22940756 + 22940736 22940776 41 GCACATCCTCCGGCAGCAGCCCTCAGTACAACATCTGCGAG GCACATCCTCCGGCAGCAGCCCCCAGTACAACATCTGCGAG < 41bp 1 0.662577255577754 1 0.475522994995117 experiment 0.674845488844492 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22940756 chr15:22940758 synonymous SNV . 0 23 hm5C_associated_SNPs_25424 0 0 1 0 2 CYFIP1 chr15:22940845 5'GT 22940845 Upstream 88bp
chr9 116750643 116750643 1 + C T LGG 116750645 + 116750625 116750665 41 GAGCACCAAGGTGGAGGGCCCAGAGCCAGTGCCAGCCGAGG GAGCACCAAGGTGGAGGGTCCAGAGCCAGTGCCAGCCGAGG < 41bp 1 0.376288161095778 1 0.737951040267944 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116750645 chr9:116750643 synonymous SNV . 0 19 hm5C_associated_SNPs_25425 0 0 1 0 1 ZNF618 chr9:116750601 3'AG 116750601 Downstream 43bp
chr15 41247771 41247771 1 + G A LGG 41247789 + 41247769 41247809 41 GCGCCTGAAGAGGCCATTGCCACGCAGATCCTGGCCTGCCG GCACCTGAAGAGGCCATTGCCACGCAGATCCTGGCCTGCCG < 41bp 1 0.791636938236921 1 0.871121823787689 experiment 0.416726123526159 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHAC1 ENSG00000128965 CDS Human protein_coding chr15:41247789 chr15:41247771 synonymous SNV . 0 3 hm5C_associated_SNPs_25426 0 0 1 0 1 CHAC1 chr15:41247748 3'AG 41247748 Downstream 24bp
chr11 61488197 61488197 1 + C T LGG 61488204 + 61488184 61488224 41 GGTCTATAACCCGCACGAGGCCTGCTCCCTGAACCTGGTGG GGTCTATAACCCGTACGAGGCCTGCTCCCTGAACCTGGTGG < 41bp 1 0.0475604415823744 1 0.0148547887802124 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61488204 chr11:61488197 nonsynonymous SNV 0.925 0 14 hm5C_associated_SNPs_25427 0 0 0 0 1 DAGLA chr11:61488151 3'AG 61488151 Downstream 47bp
chr17 40840894 40840894 1 + G A LGG 40840909 + 40840889 40840929 41 TCCAGGTTGTCCCAAGCCAGCCAGTCGATGGGACTGCCACT TCCAGATTGTCCCAAGCCAGCCAGTCGATGGGACTGCCACT < 41bp 1 0.143350962241057 1 0.0739152729511261 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40840909 chr17:40840894 nonsynonymous SNV 1.000 5 6 hm5C_associated_SNPs_25428 0 0 0 0 1 CNTNAP1 chr17:40840894 3'AG 40840894 Downstream 1bp
chr1 44684030 44684030 1 + C T LIHC 44684019 + 44683999 44684039 41 TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGATGAT TGTACTCGGAGCAGGAGTACCAGCTTTATCTTCACGATGAT < 41bp 1 0.585835769957071 1 0.40985956788063 experiment 0.828328460085858 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44684019 chr1:44684030 synonymous SNV . 0 32 hm5C_associated_SNPs_25430 0 0 1 0 2 DMAP1 chr1:44683983 3'AG 44683983 Downstream 48bp
chr1 44684030 44684030 1 + C T LIHC 44684019 + 44683999 44684039 41 TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGATGAT TGTACTCGGAGCAGGAGTACCAGCTTTATCTTCACGATGAT < 41bp 1 0.585835769957071 1 0.40985956788063 experiment 0.828328460085858 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44684019 chr1:44684030 synonymous SNV . 0 32 hm5C_associated_SNPs_25430 0 0 1 0 2 DMAP1 chr1:44684013 3'AG 44684013 Downstream 18bp
chr6 7393378 7393378 1 + T C LIHC 7393371 + 7393351 7393391 41 ACAGTCAAAGAGAAGGATGACATTCTGTTTGAAGACCTTCA ACAGTCAAAGAGAAGGATGACATTCTGCTTGAAGACCTTCA < 41bp 1 0.0809935570612929 1 0.0548428893089294 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7393371 chr6:7393378 nonsynonymous SNV 0.001 0 28 hm5C_associated_SNPs_25431 0 0 1 0 1 RIOK1 chr6:7393332 3'AG 7393332 Downstream 47bp
chr11 65402545 65402545 1 + A G LIHC 65402544 + 65402524 65402564 41 TTGCCGACATGGACCTGCTTCACCGCGTTGTGGCGCCTGGG TTGCCGACATGGACCTGCTTCGCCGCGTTGTGGCGCCTGGG < 41bp 1 0.301124734494946 1 0.275615364313126 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402544 chr11:65402545 nonsynonymous SNV 0.846 1 22 hm5C_associated_SNPs_25432 0 0 1 0 1 PCNX3 chr11:65402591 5'GT 65402591 Upstream 47bp
chr12 44166748 44166748 1 + A G LIHC 44166754 + 44166734 44166774 41 TTATGAATTGAAGAATGTCACAAATAACTTTGATGAACGAC TTATGAATTGAAGAGTGTCACAAATAACTTTGATGAACGAC < 41bp 1 0.220668094774132 1 0.523156106472015 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IRAK4 ENSG00000198001 CDS Human protein_coding chr12:44166754 chr12:44166748 nonsynonymous SNV 0.651 1 15 hm5C_associated_SNPs_25433 0 0 0 0 1 IRAK4 chr12:44166715 3'AG 44166715 Downstream 34bp
chr3 50220186 50220186 1 + G T LIHC 50220185 + 50220165 50220205 41 AGAGGCGCCGCAGAGCCCCGCGGTGTACGCCCGCATCGGGC AGAGGCGCCGCAGAGCCCCGCTGTGTACGCCCGCATCGGGC < 41bp 1 0.306522431741529 1 0.384940773248672 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50220185 chr3:50220186 synonymous SNV . 0 22 hm5C_associated_SNPs_25434 0 0 0 0 1 SEMA3F chr3:50220216 5'GT 50220216 Upstream 31bp
chr9 131684577 131684577 1 + A G LIHC 131684567 + 131684547 131684587 41 TCTCCTCCCCACCAGGAGGCCGCGCTTAGAAGCCGCCCAGT TCTCCTCCCCACCAGGAGGCCGCGCTTAGAGGCCGCCCAGT < 41bp 1 0.620072620539156 1 0.854386687278748 experiment 0.759854758921687 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHYHD1 ENSG00000175287 UTR5 Human protein_coding chr9:131684567 chr9:131684577 . . 0 31 hm5C_associated_SNPs_25436 0 0 1 0 1 PHYHD1 chr9:131684635 5'GT 131684635 Upstream 59bp
chr9 131684577 131684577 1 + A G LIHC 131684580 + 131684560 131684600 41 AGGAGGCCGCGCTTAGAAGCCGCCCAGTGCCCTGAGCGTCT AGGAGGCCGCGCTTAGAGGCCGCCCAGTGCCCTGAGCGTCT < 41bp 1 0.475974833098287 1 0.148257344961166 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHYHD1 ENSG00000175287 UTR5 Human protein_coding chr9:131684580 chr9:131684577 . . 0 18 hm5C_associated_SNPs_25437 0 0 1 0 1 PHYHD1 chr9:131684635 5'GT 131684635 Upstream 59bp
chr10 102824597 102824597 1 + A G LIHC 102824602 + 102824582 102824622 41 GACCAGCTGAACTCTACAGGCATCCCCCAGCTGCGATCACT GACCAGCTGAACTCTGCAGGCATCCCCCAGCTGCGATCACT < 41bp 1 0.0360318745945146 1 0.0829581618309021 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824602 chr10:102824597 nonsynonymous SNV 0.062 2 16 hm5C_associated_SNPs_25438 0 0 0 0 1 KAZALD1 chr10:102824583 3'AG 102824583 Downstream 15bp
chr11 43413470 43413470 1 + A G LIHC 43413476 + 43413456 43413496 41 GGAGTATAGATGACATAGGTCACCTCATTCATGAAGGCCTA GGAGTATAGATGACGTAGGTCACCTCATTCATGAAGGCCTA < 41bp 1 0.330816033847462 1 0.0967796444892883 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TTC17 ENSG00000052841 CDS Human protein_coding chr11:43413476 chr11:43413470 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_25439 0 0 1 0 1 TTC17 chr11:43413502 5'GT 43413502 Upstream 33bp
chr17 20135097 20135097 1 + A G LIHC 20135081 + 20135061 20135101 41 TTATTTCTAGGTAGTGTGATCAAGCTGGAGGAACAGAAGTC TTATTTCTAGGTAGTGTGATCAAGCTGGAGGAACAGGAGTC < 41bp 1 0.311412313129149 1 0.462219029664993 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135081 chr17:20135097 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_25440 0 0 1 0 2 SPECC1 chr17:20135071 3'AG 20135071 Downstream 27bp
chr17 20135097 20135097 1 + A G LIHC 20135081 + 20135061 20135101 41 TTATTTCTAGGTAGTGTGATCAAGCTGGAGGAACAGAAGTC TTATTTCTAGGTAGTGTGATCAAGCTGGAGGAACAGGAGTC < 41bp 1 0.311412313129149 1 0.462219029664993 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135081 chr17:20135097 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_25440 0 0 1 0 2 SPECC1 chr17:20135144 5'GT 20135144 Upstream 48bp
chr17 20135097 20135097 1 + A G LIHC 20135101 + 20135081 20135121 41 CAAGCTGGAGGAACAGAAGTCAGACCTGGAGAGGCAGCTGA CAAGCTGGAGGAACAGGAGTCAGACCTGGAGAGGCAGCTGA < 41bp 1 0.199150433376046 1 0.477300196886063 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135101 chr17:20135097 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_25441 0 0 1 0 2 SPECC1 chr17:20135071 3'AG 20135071 Downstream 27bp
chr17 20135097 20135097 1 + A G LIHC 20135101 + 20135081 20135121 41 CAAGCTGGAGGAACAGAAGTCAGACCTGGAGAGGCAGCTGA CAAGCTGGAGGAACAGGAGTCAGACCTGGAGAGGCAGCTGA < 41bp 1 0.199150433376046 1 0.477300196886063 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135101 chr17:20135097 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_25441 0 0 1 0 2 SPECC1 chr17:20135144 5'GT 20135144 Upstream 48bp
chr1 44684035 44684035 1 + A G LIHC 44684019 + 44683999 44684039 41 TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGATGAT TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGGTGAT < 41bp 1 0.5892834539998 1 0.446810990571976 experiment 0.8214330920004 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44684019 chr1:44684035 nonsynonymous SNV 0.953 1 37 hm5C_associated_SNPs_25442 0 0 1 0 2 DMAP1 chr1:44683983 3'AG 44683983 Downstream 53bp
chr1 44684035 44684035 1 + A G LIHC 44684019 + 44683999 44684039 41 TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGATGAT TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGGTGAT < 41bp 1 0.5892834539998 1 0.446810990571976 experiment 0.8214330920004 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44684019 chr1:44684035 nonsynonymous SNV 0.953 1 37 hm5C_associated_SNPs_25442 0 0 1 0 2 DMAP1 chr1:44684013 3'AG 44684013 Downstream 23bp
chr1 162039999 162039999 1 + A G LIHC 162040009 + 162039989 162040029 41 AACCTTGTGGACGATGGGCACGACCTGCGGATCCCCTTGCA AACCTTGTGGGCGATGGGCACGACCTGCGGATCCCCTTGCA < 41bp 1 0.348504996863193 1 0.467286974191666 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOS1AP ENSG00000198929 CDS Human protein_coding chr1:162040009 chr1:162039999 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_25443 0 0 1 0 1 NOS1AP chr1:162040072 5'GT 162040072 Upstream 74bp
chr1 183091289 183091289 1 + C A LIHC 183091283 + 183091263 183091303 41 GGAGATTCAACTGCAGGCACCTCCTCCGATTGCCAACCCTG GGAGATTCAACTGCAGGCACCTCCTCAGATTGCCAACCCTG < 41bp 1 0.127182575059071 1 0.131907910108566 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183091283 chr1:183091289 synonymous SNV . 0 27 hm5C_associated_SNPs_25444 0 0 1 0 2 LAMC1 chr1:183091198 3'AG 183091198 Downstream 92bp
chr1 183091289 183091289 1 + C A LIHC 183091283 + 183091263 183091303 41 GGAGATTCAACTGCAGGCACCTCCTCCGATTGCCAACCCTG GGAGATTCAACTGCAGGCACCTCCTCAGATTGCCAACCCTG < 41bp 1 0.127182575059071 1 0.131907910108566 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183091283 chr1:183091289 synonymous SNV . 0 27 hm5C_associated_SNPs_25444 0 0 1 0 2 LAMC1 chr1:183091386 5'GT 183091386 Upstream 98bp
chr1 183091289 183091289 1 + C A LIHC 183091288 + 183091268 183091308 41 TTCAACTGCAGGCACCTCCTCCGATTGCCAACCCTGTCCGT TTCAACTGCAGGCACCTCCTCAGATTGCCAACCCTGTCCGT < 41bp 1 0.431762214840578 1 0.547864556312561 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183091288 chr1:183091289 synonymous SNV . 0 22 hm5C_associated_SNPs_25445 0 0 1 0 2 LAMC1 chr1:183091198 3'AG 183091198 Downstream 92bp
chr1 183091289 183091289 1 + C A LIHC 183091288 + 183091268 183091308 41 TTCAACTGCAGGCACCTCCTCCGATTGCCAACCCTGTCCGT TTCAACTGCAGGCACCTCCTCAGATTGCCAACCCTGTCCGT < 41bp 1 0.431762214840578 1 0.547864556312561 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183091288 chr1:183091289 synonymous SNV . 0 22 hm5C_associated_SNPs_25445 0 0 1 0 2 LAMC1 chr1:183091386 5'GT 183091386 Upstream 98bp
chr14 23240666 23240666 1 + C G LIHC 23240646 + 23240626 23240666 41 TTCTCTTCTCCCCTCAGGTCCTTTACGACAGACCTTTACCC TTCTCTTCTCCCCTCAGGTCCTTTACGACAGACCTTTACCG < 41bp 1 0.112358587509796 1 0.0848830938339233 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control OXA1L ENSG00000155463 CDS Human protein_coding chr14:23240646 chr14:23240666 nonsynonymous SNV 0.967 4 41 hm5C_associated_SNPs_25446 0 0 1 1 1 OXA1L chr14:23240643 3'AG 23240643 Downstream 24bp
chr16 14972670 14972670 1 + C A LIHC 14972674 + 14972654 14972694 41 TGACCCAGGACAACGGCATTCTGACATTCTCAAACCTGGTA TGACCCAGGACAACGGAATTCTGACATTCTCAAACCTGGTA < 41bp 1 0.299131711310139 1 0.106501162052155 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972674 chr16:14972670 synonymous SNV . 0 17 hm5C_associated_SNPs_25447 0 0 0 0 2 NOMO1 chr16:14972578 3'AG 14972578 Downstream 93bp
chr16 14972670 14972670 1 + C A LIHC 14972674 + 14972654 14972694 41 TGACCCAGGACAACGGCATTCTGACATTCTCAAACCTGGTA TGACCCAGGACAACGGAATTCTGACATTCTCAAACCTGGTA < 41bp 1 0.299131711310139 1 0.106501162052155 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972674 chr16:14972670 synonymous SNV . 0 17 hm5C_associated_SNPs_25447 0 0 0 0 2 NOMO1 chr16:14972691 5'GT 14972691 Upstream 22bp
chr16 14972670 14972670 1 + C A LIHC 14972678 + 14972658 14972698 41 CCAGGACAACGGCATTCTGACATTCTCAAACCTGGTAACGT CCAGGACAACGGAATTCTGACATTCTCAAACCTGGTAACGT < 41bp 1 0.0454582385137363 1 0.010689377784729 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972678 chr16:14972670 synonymous SNV . 0 13 hm5C_associated_SNPs_25448 0 0 0 0 2 NOMO1 chr16:14972578 3'AG 14972578 Downstream 93bp
chr16 14972670 14972670 1 + C A LIHC 14972678 + 14972658 14972698 41 CCAGGACAACGGCATTCTGACATTCTCAAACCTGGTAACGT CCAGGACAACGGAATTCTGACATTCTCAAACCTGGTAACGT < 41bp 1 0.0454582385137363 1 0.010689377784729 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972678 chr16:14972670 synonymous SNV . 0 13 hm5C_associated_SNPs_25448 0 0 0 0 2 NOMO1 chr16:14972691 5'GT 14972691 Upstream 22bp
chr16 14972670 14972670 1 + C A LIHC 14972682 + 14972662 14972702 41 GACAACGGCATTCTGACATTCTCAAACCTGGTAACGTGTTC GACAACGGAATTCTGACATTCTCAAACCTGGTAACGTGTTC < 41bp 1 0.556951166970654 1 0.936124444007874 experiment 0.886097666058692 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972682 chr16:14972670 synonymous SNV . 0 9 hm5C_associated_SNPs_25449 0 0 0 0 2 NOMO1 chr16:14972578 3'AG 14972578 Downstream 93bp
chr16 14972670 14972670 1 + C A LIHC 14972682 + 14972662 14972702 41 GACAACGGCATTCTGACATTCTCAAACCTGGTAACGTGTTC GACAACGGAATTCTGACATTCTCAAACCTGGTAACGTGTTC < 41bp 1 0.556951166970654 1 0.936124444007874 experiment 0.886097666058692 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972682 chr16:14972670 synonymous SNV . 0 9 hm5C_associated_SNPs_25449 0 0 0 0 2 NOMO1 chr16:14972691 5'GT 14972691 Upstream 22bp
chr18 12718622 12718622 1 + T C LIHC 12718624 + 12718604 12718644 41 CATATCAGCGTAATGATCTGCAGCTTCGTAGGTATGTTTCT CATATCAGCGTAATGATCCGCAGCTTCGTAGGTATGTTTCT < 41bp 1 0.416994522583494 1 0.128462642431259 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMG2 ENSG00000128789 CDS Human protein_coding chr18:12718624 chr18:12718622 nonsynonymous SNV 0.810 0 19 hm5C_associated_SNPs_25450 0 0 1 0 1 PSMG2 chr18:12718634 5'GT 12718634 Upstream 13bp
chr16 560761 560761 1 + A G LIHC 560748 + 560728 560768 41 CCCGGCGTCAGAAGGAGCTCCTGTGCAAGATGGAGAGGGAG CCCGGCGTCAGAAGGAGCTCCTGTGCAAGATGGGGAGGGAG < 41bp 1 0.159472905460415 1 0.50566828250885 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:560748 chr16:560761 nonsynonymous SNV 0.997 3 34 hm5C_associated_SNPs_25453 0 0 1 0 1 RAB11FIP3 chr16:560800 5'GT 560800 Upstream 40bp
chr5 176070173 176070173 1 + C A LIHC 176070171 + 176070151 176070191 41 GACGCCCACAGGAGAAAAGTCTCCAAACTCTCCCAGGACTT GACGCCCACAGGAGAAAAGTCTACAAACTCTCCCAGGACTT < 41bp 1 0.751293450456895 1 0.459632992744446 experiment 0.497413099086209 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control EIF4E1B ENSG00000175766 CDS Human protein_coding chr5:176070171 chr5:176070173 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_25454 0 0 0 0 2 EIF4E1B chr5:176070083 3'AG 176070083 Downstream 91bp
chr5 176070173 176070173 1 + C A LIHC 176070171 + 176070151 176070191 41 GACGCCCACAGGAGAAAAGTCTCCAAACTCTCCCAGGACTT GACGCCCACAGGAGAAAAGTCTACAAACTCTCCCAGGACTT < 41bp 1 0.751293450456895 1 0.459632992744446 experiment 0.497413099086209 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control EIF4E1B ENSG00000175766 CDS Human protein_coding chr5:176070171 chr5:176070173 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_25454 0 0 0 0 2 EIF4E1B chr5:176070267 5'GT 176070267 Upstream 95bp
chr12 31244703 31244703 1 + C T LIHC 31244687 + 31244667 31244707 41 CTATCAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGG CTATCAGATGCTGCTGCATGCGGCCACTCGGCAGGCTGCGG < 41bp 1 0.521973156428399 1 0.369667828083038 experiment 0.956053687143202 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244687 chr12:31244703 synonymous SNV . 0 37 hm5C_associated_SNPs_25455 0 0 1 0 1 DDX11 chr12:31244653 3'AG 31244653 Downstream 51bp
chr12 31244703 31244703 1 + C T LIHC 31244691 + 31244671 31244711 41 CAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGGGCAT CAGATGCTGCTGCATGCGGCCACTCGGCAGGCTGCGGGCAT < 41bp 1 0.238329363029276 1 0.0572096407413483 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244691 chr12:31244703 synonymous SNV . 0 33 hm5C_associated_SNPs_25456 0 0 1 0 1 DDX11 chr12:31244653 3'AG 31244653 Downstream 51bp
chr20 2846064 2846064 1 + A G LIHC 2846046 + 2846026 2846066 41 AAGCCCAGCTTTCCTGCAGGCTCTGGTGGCTGAAGCTGACT AAGCCCAGCTTTCCTGCAGGCTCTGGTGGCTGAAGCTGGCT < 41bp 1 0.250115938812967 1 0.0568047761917114 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2846046 chr20:2846064 nonsynonymous SNV 0.998 0 39 hm5C_associated_SNPs_25457 0 0 1 0 2 VPS16 chr20:2846045 3'AG 2846045 Downstream 20bp
chr20 2846064 2846064 1 + A G LIHC 2846046 + 2846026 2846066 41 AAGCCCAGCTTTCCTGCAGGCTCTGGTGGCTGAAGCTGACT AAGCCCAGCTTTCCTGCAGGCTCTGGTGGCTGAAGCTGGCT < 41bp 1 0.250115938812967 1 0.0568047761917114 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2846046 chr20:2846064 nonsynonymous SNV 0.998 0 39 hm5C_associated_SNPs_25457 0 0 1 0 2 VPS16 chr20:2846141 5'GT 2846141 Upstream 78bp
chr1 155255677 155255677 1 + T C LIHC 155255657 + 155255637 155255677 41 TCTCGTGGTGCGTGAGGGCTCCGTGGGGAGGAAGATGTACT TCTCGTGGTGCGTGAGGGCTCCGTGGGGAGGAAGATGTACC < 41bp 1 0.391384849288485 1 0.348303824663162 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HCN3 ENSG00000143630 CDS Human protein_coding chr1:155255657 chr1:155255677 nonsynonymous SNV 1.000 5 41 hm5C_associated_SNPs_25458 0 0 1 0 1 HCN3 chr1:155255755 5'GT 155255755 Upstream 79bp
chr2 211456652 211456652 1 + T C LIHC 211456636 + 211456616 211456656 41 CATGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAA CATGGCTATGCCTTGGACAACACCCTCCCTGCTGGCCGGAA < 41bp 1 0.253028613643239 1 0.100969910621643 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456636 chr2:211456652 nonsynonymous SNV 1.000 5 37 hm5C_associated_SNPs_25459 0 0 0 0 2 CPS1 chr2:211456555 3'AG 211456555 Downstream 98bp
chr2 211456652 211456652 1 + T C LIHC 211456636 + 211456616 211456656 41 CATGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAA CATGGCTATGCCTTGGACAACACCCTCCCTGCTGGCCGGAA < 41bp 1 0.253028613643239 1 0.100969910621643 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456636 chr2:211456652 nonsynonymous SNV 1.000 5 37 hm5C_associated_SNPs_25459 0 0 0 0 2 CPS1 chr2:211456693 5'GT 211456693 Upstream 42bp
chr2 211456652 211456652 1 + T C LIHC 211456638 + 211456618 211456658 41 TGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAAAC TGGCTATGCCTTGGACAACACCCTCCCTGCTGGCCGGAAAC < 41bp 1 0.0542677200320224 1 0.109399348497391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456638 chr2:211456652 nonsynonymous SNV 1.000 5 35 hm5C_associated_SNPs_25460 0 0 0 0 2 CPS1 chr2:211456555 3'AG 211456555 Downstream 98bp
chr2 211456652 211456652 1 + T C LIHC 211456638 + 211456618 211456658 41 TGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAAAC TGGCTATGCCTTGGACAACACCCTCCCTGCTGGCCGGAAAC < 41bp 1 0.0542677200320224 1 0.109399348497391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456638 chr2:211456652 nonsynonymous SNV 1.000 5 35 hm5C_associated_SNPs_25460 0 0 0 0 2 CPS1 chr2:211456693 5'GT 211456693 Upstream 42bp
chr2 220412321 220412321 1 + A G LIHC 220412324 + 220412304 220412344 41 CCGAGAGCGGGTGCTAGAGACACAGCTGAGTGCTGGGGCGA CCGAGAGCGGGTGCTAGGGACACAGCTGAGTGCTGGGGCGA < 41bp 1 0.599138843075432 1 0.190271288156509 experiment 0.801722313849135 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM198 ENSG00000188760 CDS Human protein_coding chr2:220412324 chr2:220412321 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_25461 0 0 1 0 1 TMEM198 chr2:220412228 3'AG 220412228 Downstream 94bp
chr3 183899712 183899712 1 + C T LIHC 183899728 + 183899708 183899748 41 CAACCAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTA CAACTAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTA < 41bp 1 0.104410144174793 1 0.0590460896492004 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899728 chr3:183899712 synonymous SNV . 0 5 hm5C_associated_SNPs_25462 0 0 1 0 1 AP2M1 chr3:183899700 3'AG 183899700 Downstream 13bp
chr3 183899712 183899712 1 + C T LIHC 183899729 + 183899709 183899749 41 AACCAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAG AACTAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAG < 41bp 1 0.0314988284821927 1 0.0591250956058502 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899729 chr3:183899712 synonymous SNV . 0 4 hm5C_associated_SNPs_25463 0 0 1 0 1 AP2M1 chr3:183899700 3'AG 183899700 Downstream 13bp
chr3 183899712 183899712 1 + C T LIHC 183899730 + 183899710 183899750 41 ACCAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAGT ACTAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAGT < 41bp 1 0.312669546902954 1 0.0458435118198395 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899730 chr3:183899712 synonymous SNV . 0 3 hm5C_associated_SNPs_25464 0 0 1 0 1 AP2M1 chr3:183899700 3'AG 183899700 Downstream 13bp
chr16 29828316 29828316 1 + A G LIHC 29828300 + 29828280 29828320 41 AGGAGAGATCCGATGAGGAGCCGGAGGCCAAAGAAGAGGAA AGGAGAGATCCGATGAGGAGCCGGAGGCCAAAGAAGGGGAA < 41bp 1 0.712780406431814 1 0.65258777141571 experiment 0.574439187136371 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828300 chr16:29828316 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_25468 0 0 1 0 1 PAGR1 chr16:29828328 5'GT 29828328 Upstream 13bp
chr16 29828316 29828316 1 + A G LIHC 29828301 + 29828281 29828321 41 GGAGAGATCCGATGAGGAGCCGGAGGCCAAAGAAGAGGAAG GGAGAGATCCGATGAGGAGCCGGAGGCCAAAGAAGGGGAAG < 41bp 1 0.748990363355775 1 0.827671110630035 experiment 0.50201927328845 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828301 chr16:29828316 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_25469 0 0 1 0 1 PAGR1 chr16:29828328 5'GT 29828328 Upstream 13bp
chr16 29828316 29828316 1 + A G LIHC 29828307 + 29828287 29828327 41 ATCCGATGAGGAGCCGGAGGCCAAAGAAGAGGAAGAGGAAA ATCCGATGAGGAGCCGGAGGCCAAAGAAGGGGAAGAGGAAA < 41bp 1 0.413961757963961 1 0.692412078380585 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828307 chr16:29828316 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_25470 0 0 1 0 1 PAGR1 chr16:29828328 5'GT 29828328 Upstream 13bp
chr19 10794120 10794120 1 + C T LIHC 10794136 + 10794116 10794156 41 TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG TGCCTTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG < 41bp 1 0.410535665238941 1 0.0538612008094788 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794136 chr19:10794120 synonymous SNV . 0 5 hm5C_associated_SNPs_25471 0 0 1 0 2 ILF3 chr19:10794042 3'AG 10794042 Downstream 79bp
chr19 10794120 10794120 1 + C T LIHC 10794136 + 10794116 10794156 41 TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG TGCCTTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG < 41bp 1 0.410535665238941 1 0.0538612008094788 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794136 chr19:10794120 synonymous SNV . 0 5 hm5C_associated_SNPs_25471 0 0 1 0 2 ILF3 chr19:10794218 5'GT 10794218 Upstream 99bp
chr19 50733867 50733867 1 + A G LIHC 50733861 + 50733841 50733881 41 TTCTACCAGCTGCTGGGGGGCGCTGGAGAGCAGCTCAAAGG TTCTACCAGCTGCTGGGGGGCGCTGGGGAGCAGCTCAAAGG < 41bp 1 0.294320371360694 1 0.493166923522949 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50733861 chr19:50733867 synonymous SNV . 0 27 hm5C_associated_SNPs_25472 0 0 1 0 2 MYH14 chr19:50733782 3'AG 50733782 Downstream 86bp
chr19 50733867 50733867 1 + A G LIHC 50733861 + 50733841 50733881 41 TTCTACCAGCTGCTGGGGGGCGCTGGAGAGCAGCTCAAAGG TTCTACCAGCTGCTGGGGGGCGCTGGGGAGCAGCTCAAAGG < 41bp 1 0.294320371360694 1 0.493166923522949 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50733861 chr19:50733867 synonymous SNV . 0 27 hm5C_associated_SNPs_25472 0 0 1 0 2 MYH14 chr19:50733880 5'GT 50733880 Upstream 14bp
chr1 231401763 231401763 1 + T C LIHC 231401783 + 231401763 231401803 41 TTCTGAATATTGTGATGGAGCCATTTTTTAAAAGAGAAGTT CTCTGAATATTGTGATGGAGCCATTTTTTAAAAGAGAAGTT < 41bp 1 0.0710122361272369 1 0.0778032243251801 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231401783 chr1:231401763 nonsynonymous SNV 0.999 5 1 hm5C_associated_SNPs_25476 0 0 1 0 1 GNPAT chr1:231401760 3'AG 231401760 Downstream 4bp
chr11 61507970 61507970 1 + T C LIHC 61507955 + 61507935 61507975 41 CTGCTGTGAGCAGGAGGAGCCCACATACTTTGCCATCTGGG CTGCTGTGAGCAGGAGGAGCCCACATACTTTGCCACCTGGG < 41bp 1 0.128298694513691 1 0.423377007246017 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507955 chr11:61507970 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_25477 0 0 1 0 2 DAGLA chr11:61507935 3'AG 61507935 Downstream 36bp
chr11 61507970 61507970 1 + T C LIHC 61507955 + 61507935 61507975 41 CTGCTGTGAGCAGGAGGAGCCCACATACTTTGCCATCTGGG CTGCTGTGAGCAGGAGGAGCCCACATACTTTGCCACCTGGG < 41bp 1 0.128298694513691 1 0.423377007246017 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507955 chr11:61507970 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_25477 0 0 1 0 2 DAGLA chr11:61508064 5'GT 61508064 Upstream 95bp
chr11 61507970 61507970 1 + T C LIHC 61507980 + 61507960 61508000 41 TACTTTGCCATCTGGGGCGACAACAAGGCCTTCAATGAGGT TACTTTGCCACCTGGGGCGACAACAAGGCCTTCAATGAGGT < 41bp 1 0.176096634775183 1 0.271728843450546 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507980 chr11:61507970 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_25478 0 0 1 0 2 DAGLA chr11:61507935 3'AG 61507935 Downstream 36bp
chr11 61507970 61507970 1 + T C LIHC 61507980 + 61507960 61508000 41 TACTTTGCCATCTGGGGCGACAACAAGGCCTTCAATGAGGT TACTTTGCCACCTGGGGCGACAACAAGGCCTTCAATGAGGT < 41bp 1 0.176096634775183 1 0.271728843450546 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507980 chr11:61507970 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_25478 0 0 1 0 2 DAGLA chr11:61508064 5'GT 61508064 Upstream 95bp
chr11 66050524 66050524 1 + T C LIHC 66050523 + 66050503 66050543 41 CAGCTGGTGGTCCCAGAATACTCCATCCACGGCCTCTTCTG CAGCTGGTGGTCCCAGAATACCCCATCCACGGCCTCTTCTG < 41bp 1 0.529103487089583 1 0.119697898626328 experiment 0.941793025820834 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CNIH2 ENSG00000174871 CDS Human protein_coding chr11:66050523 chr11:66050524 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_25479 0 0 1 1 2 CNIH2 chr11:66050506 3'AG 66050506 Downstream 19bp
chr11 66050524 66050524 1 + T C LIHC 66050523 + 66050503 66050543 41 CAGCTGGTGGTCCCAGAATACTCCATCCACGGCCTCTTCTG CAGCTGGTGGTCCCAGAATACCCCATCCACGGCCTCTTCTG < 41bp 1 0.529103487089583 1 0.119697898626328 experiment 0.941793025820834 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CNIH2 ENSG00000174871 CDS Human protein_coding chr11:66050523 chr11:66050524 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_25479 0 0 1 1 2 CNIH2 chr11:66050618 5'GT 66050618 Upstream 95bp
chr12 53671310 53671310 1 + C T LIHC 53671316 + 53671296 53671336 41 GAGGAATTTGAAGTCAATGACCTGAACTATGAAGATAAACT GAGGAATTTGAAGTTAATGACCTGAACTATGAAGATAAACT < 41bp 1 0.0664077085571632 1 0.0537891685962677 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53671316 chr12:53671310 synonymous SNV . 0 15 hm5C_associated_SNPs_25480 0 0 1 0 1 ESPL1 chr12:53671392 5'GT 53671392 Upstream 83bp
chr20 17956503 17956503 1 + A G LIHC 17956504 + 17956484 17956524 41 AAGTGCTGTTCAACATGAAACCTTAAACTATATAGGTCTGC AAGTGCTGTTCAACATGAAGCCTTAAACTATATAGGTCTGC < 41bp 1 0.0873387045711358 1 0.141920626163483 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MGME1 ENSG00000125871 CDS Human protein_coding chr20:17956504 chr20:17956503 nonsynonymous SNV 0.670 0 20 hm5C_associated_SNPs_25486 0 0 1 0 1 MGME1 chr20:17956546 5'GT 17956546 Upstream 44bp
chr12 109637346 109637346 1 + G C LIHC 109637339 + 109637319 109637359 41 GGCCACGTTGAGGCTGGGAGCAGCTACGCTGAGATGGAGGT GGCCACGTTGAGGCTGGGAGCAGCTACCCTGAGATGGAGGT < 41bp 1 0.226173131323838 1 0.70685338973999 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109637339 chr12:109637346 nonsynonymous SNV 0.876 4 28 hm5C_associated_SNPs_25488 0 0 1 0 1 ACACB chr12:109637357 5'GT 109637357 Upstream 12bp
chr12 109637347 109637347 1 + C T LIHC 109637339 + 109637319 109637359 41 GGCCACGTTGAGGCTGGGAGCAGCTACGCTGAGATGGAGGT GGCCACGTTGAGGCTGGGAGCAGCTACGTTGAGATGGAGGT < 41bp 1 0.227477320140465 1 0.43122798204422 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109637339 chr12:109637347 nonsynonymous SNV 0.868 4 29 hm5C_associated_SNPs_25489 0 0 1 0 1 ACACB chr12:109637357 5'GT 109637357 Upstream 11bp
chr14 102478246 102478246 1 + A T LIHC 102478245 + 102478225 102478265 41 ATCAGATCACCCAGATCAATCATGGCCTGATGATGGTGGGG ATCAGATCACCCAGATCAATCTTGGCCTGATGATGGTGGGG < 41bp 1 0.179868243690652 1 0.175550997257233 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478245 chr14:102478246 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_25490 0 0 1 0 1 DYNC1H1 chr14:102478212 3'AG 102478212 Downstream 35bp
chr14 102478246 102478246 1 + A T LIHC 102478250 + 102478230 102478270 41 ATCACCCAGATCAATCATGGCCTGATGATGGTGGGGCCCTC ATCACCCAGATCAATCTTGGCCTGATGATGGTGGGGCCCTC < 41bp 1 0.115055402371681 1 0.0796366631984711 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478250 chr14:102478246 nonsynonymous SNV 0.989 4 17 hm5C_associated_SNPs_25491 0 0 1 0 1 DYNC1H1 chr14:102478212 3'AG 102478212 Downstream 35bp
chr14 102478246 102478246 1 + A T LIHC 102478266 + 102478246 102478286 41 ATGGCCTGATGATGGTGGGGCCCTCGGGAAGTGGGAAGAGC TTGGCCTGATGATGGTGGGGCCCTCGGGAAGTGGGAAGAGC < 41bp 1 0.00966681653528495 1 0.0681478083133698 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478266 chr14:102478246 nonsynonymous SNV 0.989 4 1 hm5C_associated_SNPs_25492 0 0 1 0 1 DYNC1H1 chr14:102478212 3'AG 102478212 Downstream 35bp
chr18 13056654 13056654 1 + C T LIHC 13056650 + 13056630 13056670 41 TCCTGTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCAT TCCTGTGCCGTCTGTTGGTACAAATTGTGGAATTGAACCAT < 41bp 1 0.155086472082672 1 0.361524403095245 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056650 chr18:13056654 synonymous SNV . 0 25 hm5C_associated_SNPs_25493 0 0 1 0 1 CEP192 chr18:13056697 5'GT 13056697 Upstream 44bp
chr1 110561690 110561690 1 + G C LIHC 110561676 + 110561656 110561696 41 CTCTCTTACCTTTCCAGGGTCGTCTACTCAATTTGAGCTGC CTCTCTTACCTTTCCAGGGTCGTCTACTCAATTTCAGCTGC < 41bp 1 0.146174245757521 1 0.0428646504878998 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL1 ENSG00000168710 CDS Human protein_coding chr1:110561676 chr1:110561690 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_25494 0 0 1 0 1 AHCYL1 chr1:110561741 5'GT 110561741 Upstream 52bp
chr3 112714019 112714019 1 + A G LIHC 112714008 + 112713988 112714028 41 ACAAAGAAAATGAATTTTTTCAAAGTTGGAAAACATTTTAC ACAAAGAAAATGAATTTTTTCAAAGTTGGAAGACATTTTAC < 41bp 1 0.597510830595113 1 0.735539615154266 experiment 0.804978338809775 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTPBP8 ENSG00000163607 CDS Human protein_coding chr3:112714008 chr3:112714019 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_25496 0 0 1 2 2 GTPBP8 chr3:112713982 3'AG 112713982 Downstream 38bp
chr3 112714019 112714019 1 + A G LIHC 112714008 + 112713988 112714028 41 ACAAAGAAAATGAATTTTTTCAAAGTTGGAAAACATTTTAC ACAAAGAAAATGAATTTTTTCAAAGTTGGAAGACATTTTAC < 41bp 1 0.597510830595113 1 0.735539615154266 experiment 0.804978338809775 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTPBP8 ENSG00000163607 CDS Human protein_coding chr3:112714008 chr3:112714019 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_25496 0 0 1 2 2 GTPBP8 chr3:112714112 5'GT 112714112 Upstream 94bp
chr10 51580576 51580576 1 + T C LIHC 51580558 + 51580538 51580578 41 CATGTATGTGTTTCCTAGGTCAAAGCTCAGATTCACAGTTG CATGTATGTGTTTCCTAGGTCAAAGCTCAGATTCACAGCTG < 41bp 1 0.393509744043188 1 0.444865673780441 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NCOA4 ENSG00000138293 CDS Human other chr10:51580558 chr10:51580576 synonymous SNV . 0 39 hm5C_associated_SNPs_25497 0 0 1 0 1 NCOA4 chr10:51580556 3'AG 51580556 Downstream 21bp
chr18 12718587 12718587 1 + T C LIHC 12718592 + 12718572 12718612 41 TGCCAGAGTCATTGTTCTTTCAAGCAGTCATTCATATCAGC TGCCAGAGTCATTGTCCTTTCAAGCAGTCATTCATATCAGC < 41bp 1 0.733913329284976 1 0.528835773468018 experiment 0.532173341430048 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMG2 ENSG00000128789 CDS Human protein_coding chr18:12718592 chr18:12718587 synonymous SNV . 0 16 hm5C_associated_SNPs_25498 0 0 1 0 2 PSMG2 chr18:12718516 3'AG 12718516 Downstream 72bp
chr18 12718587 12718587 1 + T C LIHC 12718592 + 12718572 12718612 41 TGCCAGAGTCATTGTTCTTTCAAGCAGTCATTCATATCAGC TGCCAGAGTCATTGTCCTTTCAAGCAGTCATTCATATCAGC < 41bp 1 0.733913329284976 1 0.528835773468018 experiment 0.532173341430048 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMG2 ENSG00000128789 CDS Human protein_coding chr18:12718592 chr18:12718587 synonymous SNV . 0 16 hm5C_associated_SNPs_25498 0 0 1 0 2 PSMG2 chr18:12718634 5'GT 12718634 Upstream 48bp
chr12 49723711 49723711 1 + G A LIHC 49723698 + 49723678 49723718 41 TATAAGGTCACTGGAGGGTTCTGGGAAACCACCGGTGGCCA TATAAGGTCACTGGAGGGTTCTGGGAAACCACCAGTGGCCA < 41bp 1 0.791994725710329 1 0.763332545757294 experiment 0.416010548579342 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TROAP ENSG00000135451 CDS Human protein_coding chr12:49723698 chr12:49723711 synonymous SNV . 0 34 hm5C_associated_SNPs_25502 0 0 1 0 2 TROAP chr12:49723640 3'AG 49723640 Downstream 72bp
chr12 49723711 49723711 1 + G A LIHC 49723698 + 49723678 49723718 41 TATAAGGTCACTGGAGGGTTCTGGGAAACCACCGGTGGCCA TATAAGGTCACTGGAGGGTTCTGGGAAACCACCAGTGGCCA < 41bp 1 0.791994725710329 1 0.763332545757294 experiment 0.416010548579342 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TROAP ENSG00000135451 CDS Human protein_coding chr12:49723698 chr12:49723711 synonymous SNV . 0 34 hm5C_associated_SNPs_25502 0 0 1 0 2 TROAP chr12:49723774 5'GT 49723774 Upstream 64bp
chr16 70366883 70366883 1 + A C LIHC 70366872 + 70366852 70366892 41 CCAACTCTCCTTCCTGCAGGCATTGATGTTGAACAAGTGTC CCAACTCTCCTTCCTGCAGGCATTGATGTTGCACAAGTGTC < 41bp 1 0.0573304697187674 1 0.097764253616333 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX19B ENSG00000157349 CDS Human protein_coding chr16:70366872 chr16:70366883 nonsynonymous SNV 0.884 3 32 hm5C_associated_SNPs_25503 0 0 0 0 1 DDX19B chr16:70366871 3'AG 70366871 Downstream 13bp
chr17 36508877 36508877 1 + C T LIHC 36508864 + 36508844 36508884 41 AGAGCTGGCTGCTTCAGCTGCGAGCCTGACAGACATGGGAG AGAGCTGGCTGCTTCAGCTGCGAGCCTGACAGATATGGGAG < 41bp 1 0.453903005585478 1 0.43446296453476 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SOCS7 ENSG00000174111 CDS Human other chr17:36508864 chr17:36508877 synonymous SNV . 0 34 hm5C_associated_SNPs_25504 0 0 1 0 1 SOCS7 chr17:36508915 5'GT 36508915 Upstream 39bp
chr17 36508877 36508877 1 + C T LIHC 36508869 + 36508849 36508889 41 TGGCTGCTTCAGCTGCGAGCCTGACAGACATGGGAGGCTCT TGGCTGCTTCAGCTGCGAGCCTGACAGATATGGGAGGCTCT < 41bp 1 0.124432649270899 1 0.141251176595688 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SOCS7 ENSG00000174111 CDS Human other chr17:36508869 chr17:36508877 synonymous SNV . 0 29 hm5C_associated_SNPs_25505 0 0 1 0 1 SOCS7 chr17:36508915 5'GT 36508915 Upstream 39bp
chr12 132546658 132546658 1 + C A LIHC 132546659 + 132546639 132546679 41 TGTTTGCCTTTTCTAGACGCCGGGAGGCTCTGCTCCCGCCC TGTTTGCCTTTTCTAGACGACGGGAGGCTCTGCTCCCGCCC < 41bp 1 0.749908813567904 1 0.899061977863312 experiment 0.500182372864191 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546659 chr12:132546658 nonsynonymous SNV 0.235 2 20 hm5C_associated_SNPs_25506 0 0 0 0 1 EP400 chr12:132546655 3'AG 132546655 Downstream 4bp
chr16 2122314 2122314 1 + T C LIHC 2122321 + 2122301 2122341 41 TAAAGTGCTCATCTTTACTTCCCCTTGCAGTGTGGACCAGC TAAAGTGCTCATCCTTACTTCCCCTTGCAGTGTGGACCAGC < 41bp 1 0.110965823793677 1 0.0362900495529175 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2122321 chr16:2122314 nonsynonymous SNV 0.919 2 14 hm5C_associated_SNPs_25507 0 0 1 0 2 TSC2 chr16:2122242 3'AG 2122242 Downstream 73bp
chr16 2122314 2122314 1 + T C LIHC 2122321 + 2122301 2122341 41 TAAAGTGCTCATCTTTACTTCCCCTTGCAGTGTGGACCAGC TAAAGTGCTCATCCTTACTTCCCCTTGCAGTGTGGACCAGC < 41bp 1 0.110965823793677 1 0.0362900495529175 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2122321 chr16:2122314 nonsynonymous SNV 0.919 2 14 hm5C_associated_SNPs_25507 0 0 1 0 2 TSC2 chr16:2122364 5'GT 2122364 Upstream 51bp
chr11 128680417 128680417 1 + G A LIHC 128680424 + 128680404 128680444 41 AGCGCCAACGCCAGCTGTATCACCTGGGAGGGGACCAACGG AGCGCCAACGCCAACTGTATCACCTGGGAGGGGACCAACGG < 41bp 1 0.693338976122021 1 0.307362854480743 experiment 0.613322047755958 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FLI1 ENSG00000151702 CDS Human protein_coding chr11:128680424 chr11:128680417 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_25509 0 0 0 0 1 FLI1 chr11:128680354 3'AG 128680354 Downstream 64bp
chr1 39906758 39906758 1 + A G LIHC 39906771 + 39906751 39906791 41 CCTGTGGAGAAACTGAGAAGCCTGAAGTGAGGAAGAGCATT CCTGTGGGGAAACTGAGAAGCCTGAAGTGAGGAAGAGCATT < 41bp 1 0.0909447978180288 1 0.179688930511475 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39906771 chr1:39906758 synonymous SNV . 0 8 hm5C_associated_SNPs_25510 0 0 1 0 2 MACF1 chr1:39906675 3'AG 39906675 Downstream 84bp
chr1 39906758 39906758 1 + A G LIHC 39906771 + 39906751 39906791 41 CCTGTGGAGAAACTGAGAAGCCTGAAGTGAGGAAGAGCATT CCTGTGGGGAAACTGAGAAGCCTGAAGTGAGGAAGAGCATT < 41bp 1 0.0909447978180288 1 0.179688930511475 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39906771 chr1:39906758 synonymous SNV . 0 8 hm5C_associated_SNPs_25510 0 0 1 0 2 MACF1 chr1:39906797 5'GT 39906797 Upstream 40bp
chr1 39906758 39906758 1 + A G LIHC 39906772 + 39906752 39906792 41 CTGTGGAGAAACTGAGAAGCCTGAAGTGAGGAAGAGCATTG CTGTGGGGAAACTGAGAAGCCTGAAGTGAGGAAGAGCATTG < 41bp 1 0.31123683237279 1 0.25485622882843 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39906772 chr1:39906758 synonymous SNV . 0 7 hm5C_associated_SNPs_25511 0 0 1 0 2 MACF1 chr1:39906675 3'AG 39906675 Downstream 84bp
chr1 39906758 39906758 1 + A G LIHC 39906772 + 39906752 39906792 41 CTGTGGAGAAACTGAGAAGCCTGAAGTGAGGAAGAGCATTG CTGTGGGGAAACTGAGAAGCCTGAAGTGAGGAAGAGCATTG < 41bp 1 0.31123683237279 1 0.25485622882843 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39906772 chr1:39906758 synonymous SNV . 0 7 hm5C_associated_SNPs_25511 0 0 1 0 2 MACF1 chr1:39906797 5'GT 39906797 Upstream 40bp
chr12 110572803 110572803 1 + A G LIHC 110572783 + 110572763 110572803 41 CAATGGAAGAAGAAAAGGATCAGCTCATTAAGAGAGTTGAA CAATGGAAGAAGAAAAGGATCAGCTCATTAAGAGAGTTGAG < 41bp 1 0.326402245419139 1 0.185454398393631 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFT81 ENSG00000122970 CDS Human protein_coding chr12:110572783 chr12:110572803 synonymous SNV . 0 41 hm5C_associated_SNPs_25512 0 0 1 0 1 IFT81 chr12:110572753 3'AG 110572753 Downstream 51bp
chr17 4435912 4435912 1 + G A LIHC 4435915 + 4435895 4435935 41 CTAAAAGGGGTCATGCCGACCAGCTCGGGGACCAGCTCAAG CTAAAAGGGGTCATGCCAACCAGCTCGGGGACCAGCTCAAG < 41bp 1 0.414634859029817 1 0.606853783130646 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4435915 chr17:4435912 nonsynonymous SNV 0.257 2 18 hm5C_associated_SNPs_25513 0 0 0 0 2 SPNS2 chr17:4435837 3'AG 4435837 Downstream 76bp
chr17 4435912 4435912 1 + G A LIHC 4435915 + 4435895 4435935 41 CTAAAAGGGGTCATGCCGACCAGCTCGGGGACCAGCTCAAG CTAAAAGGGGTCATGCCAACCAGCTCGGGGACCAGCTCAAG < 41bp 1 0.414634859029817 1 0.606853783130646 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4435915 chr17:4435912 nonsynonymous SNV 0.257 2 18 hm5C_associated_SNPs_25513 0 0 0 0 2 SPNS2 chr17:4435979 5'GT 4435979 Upstream 68bp
chr1 57161707 57161707 1 + G A LIHC 57161696 + 57161676 57161716 41 CCCTCCCATTTGATGATGAGCATGTACCTACGTTATTTAAG CCCTCCCATTTGATGATGAGCATGTACCTACATTATTTAAG < 41bp 1 0.165754189076031 1 0.0326279103755951 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57161696 chr1:57161707 synonymous SNV . 0 32 hm5C_associated_SNPs_25515 0 0 1 0 1 PRKAA2 chr1:57161608 3'AG 57161608 Downstream 100bp
chr1 114500821 114500821 1 + A G LIHC 114500816 + 114500796 114500836 41 GCACCAGTTCCTGGAGTTGCCCAGCAGGGTGTTTCCTTGCA GCACCAGTTCCTGGAGTTGCCCAGCGGGGTGTTTCCTTGCA < 41bp 1 0.402826960979946 1 0.692572891712189 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114500816 chr1:114500821 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_25518 0 0 1 0 1 HIPK1 chr1:114500913 5'GT 114500913 Upstream 93bp
chr2 47205974 47205974 1 + C T LIHC 47205958 + 47205938 47205978 41 ATAACAGCACGTCGAGGCATCTGAAAGGCTGTCACCCGCTT ATAACAGCACGTCGAGGCATCTGAAAGGCTGTCACCTGCTT < 41bp 1 0.535527243426574 1 0.727853000164032 experiment 0.928945513146853 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47205958 chr2:47205974 nonsynonymous SNV 0.001 0 37 hm5C_associated_SNPs_25519 0 0 1 0 2 TTC7A chr2:47205931 3'AG 47205931 Downstream 44bp
chr2 47205974 47205974 1 + C T LIHC 47205958 + 47205938 47205978 41 ATAACAGCACGTCGAGGCATCTGAAAGGCTGTCACCCGCTT ATAACAGCACGTCGAGGCATCTGAAAGGCTGTCACCTGCTT < 41bp 1 0.535527243426574 1 0.727853000164032 experiment 0.928945513146853 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47205958 chr2:47205974 nonsynonymous SNV 0.001 0 37 hm5C_associated_SNPs_25519 0 0 1 0 2 TTC7A chr2:47206046 5'GT 47206046 Upstream 73bp
chr14 102467962 102467962 1 + A G LIHC 102467953 + 102467933 102467973 41 TGATCCGTGGCTGGGATGACCTCTTCAACAAGGTCAAAGAA TGATCCGTGGCTGGGATGACCTCTTCAACGAGGTCAAAGAA < 41bp 1 0.0595520588962542 1 0.142981112003326 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102467953 chr14:102467962 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_25521 0 0 1 0 2 DYNC1H1 chr14:102467872 3'AG 102467872 Downstream 91bp
chr14 102467962 102467962 1 + A G LIHC 102467953 + 102467933 102467973 41 TGATCCGTGGCTGGGATGACCTCTTCAACAAGGTCAAAGAA TGATCCGTGGCTGGGATGACCTCTTCAACGAGGTCAAAGAA < 41bp 1 0.0595520588962542 1 0.142981112003326 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102467953 chr14:102467962 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_25521 0 0 1 0 2 DYNC1H1 chr14:102468018 5'GT 102468018 Upstream 57bp
chr16 89977057 89977057 1 + A G LIHC 89977054 + 89977034 89977074 41 TCTTCTTCCGGTCACTGTTGCCAAACTATACCATGGAGGTA TCTTCTTCCGGTCACTGTTGCCAGACTATACCATGGAGGTA < 41bp 1 0.513072203492334 1 0.279062956571579 experiment 0.973855593015332 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89977054 chr16:89977057 nonsynonymous SNV 0.021 2 24 hm5C_associated_SNPs_25522 0 0 1 0 2 TCF25 chr16:89976999 3'AG 89976999 Downstream 59bp
chr16 89977057 89977057 1 + A G LIHC 89977054 + 89977034 89977074 41 TCTTCTTCCGGTCACTGTTGCCAAACTATACCATGGAGGTA TCTTCTTCCGGTCACTGTTGCCAGACTATACCATGGAGGTA < 41bp 1 0.513072203492334 1 0.279062956571579 experiment 0.973855593015332 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89977054 chr16:89977057 nonsynonymous SNV 0.021 2 24 hm5C_associated_SNPs_25522 0 0 1 0 2 TCF25 chr16:89977071 5'GT 89977071 Upstream 15bp
chrX 107868981 107868981 1 + A G LIHC 107868973 + 107868953 107868993 41 GTCTCCCTGGACAGCCAGGTCTTATAGGACCTCCTGGACTT GTCTCCCTGGACAGCCAGGTCTTATAGGGCCTCCTGGACTT < 41bp 1 0.189380689070365 1 0.0282460153102875 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107868973 chrX:107868981 synonymous SNV . 0 29 hm5C_associated_SNPs_25523 0 0 0 0 2 COL4A5 chrX:107868935 3'AG 107868935 Downstream 47bp
chrX 107868981 107868981 1 + A G LIHC 107868973 + 107868953 107868993 41 GTCTCCCTGGACAGCCAGGTCTTATAGGACCTCCTGGACTT GTCTCCCTGGACAGCCAGGTCTTATAGGGCCTCCTGGACTT < 41bp 1 0.189380689070365 1 0.0282460153102875 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107868973 chrX:107868981 synonymous SNV . 0 29 hm5C_associated_SNPs_25523 0 0 0 0 2 COL4A5 chrX:107869024 5'GT 107869024 Upstream 44bp
chr11 125448940 125448940 1 + G T LIHC 125448950 + 125448930 125448970 41 TCAACCTTTTGCTGCAGGCTCTTTTCCTCATTCAGGTGAGA TCAACCTTTTTCTGCAGGCTCTTTTCCTCATTCAGGTGAGA < 41bp 1 0.0381180973172745 1 0.032526969909668 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EI24 ENSG00000149547 CDS Human protein_coding chr11:125448950 chr11:125448940 nonsynonymous SNV 0.996 4 11 hm5C_associated_SNPs_25525 0 0 0 0 2 EI24 chr11:125448845 3'AG 125448845 Downstream 96bp
chr11 125448940 125448940 1 + G T LIHC 125448950 + 125448930 125448970 41 TCAACCTTTTGCTGCAGGCTCTTTTCCTCATTCAGGTGAGA TCAACCTTTTTCTGCAGGCTCTTTTCCTCATTCAGGTGAGA < 41bp 1 0.0381180973172745 1 0.032526969909668 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EI24 ENSG00000149547 CDS Human protein_coding chr11:125448950 chr11:125448940 nonsynonymous SNV 0.996 4 11 hm5C_associated_SNPs_25525 0 0 0 0 2 EI24 chr11:125448964 5'GT 125448964 Upstream 25bp
chr2 233671287 233671287 1 + A G LIHC 233671297 + 233671277 233671317 41 GTGTGATGAAAGCTTCCAACCTCTTGGCGATATCATGAAAA GTGTGATGAAGGCTTCCAACCTCTTGGCGATATCATGAAAA < 41bp 1 0.245917372122099 1 0.300713717937469 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671297 chr2:233671287 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_25526 0 0 1 0 2 GIGYF2 chr2:233671201 3'AG 233671201 Downstream 87bp
chr2 233671287 233671287 1 + A G LIHC 233671297 + 233671277 233671317 41 GTGTGATGAAAGCTTCCAACCTCTTGGCGATATCATGAAAA GTGTGATGAAGGCTTCCAACCTCTTGGCGATATCATGAAAA < 41bp 1 0.245917372122099 1 0.300713717937469 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671297 chr2:233671287 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_25526 0 0 1 0 2 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 81bp
chr3 58097543 58097543 1 + T C LIHC 58097553 + 58097533 58097573 41 CCTTTCAGAGTCAAAGTTGACCCTTCCCACGATGCCAGCAA CCTTTCAGAGCCAAAGTTGACCCTTCCCACGATGCCAGCAA < 41bp 1 0.0613800876763178 1 0.0631116032600403 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58097553 chr3:58097543 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_25527 0 0 1 0 2 FLNB chr3:58097518 3'AG 58097518 Downstream 26bp
chr3 58097543 58097543 1 + T C LIHC 58097553 + 58097533 58097573 41 CCTTTCAGAGTCAAAGTTGACCCTTCCCACGATGCCAGCAA CCTTTCAGAGCCAAAGTTGACCCTTCCCACGATGCCAGCAA < 41bp 1 0.0613800876763178 1 0.0631116032600403 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58097553 chr3:58097543 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_25527 0 0 1 0 2 FLNB chr3:58097608 5'GT 58097608 Upstream 66bp
chr3 58097543 58097543 1 + T C LIHC 58097554 + 58097534 58097574 41 CTTTCAGAGTCAAAGTTGACCCTTCCCACGATGCCAGCAAA CTTTCAGAGCCAAAGTTGACCCTTCCCACGATGCCAGCAAA < 41bp 1 0.00815672292134913 1 0.137729078531265 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58097554 chr3:58097543 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_25528 0 0 1 0 2 FLNB chr3:58097518 3'AG 58097518 Downstream 26bp
chr3 58097543 58097543 1 + T C LIHC 58097554 + 58097534 58097574 41 CTTTCAGAGTCAAAGTTGACCCTTCCCACGATGCCAGCAAA CTTTCAGAGCCAAAGTTGACCCTTCCCACGATGCCAGCAAA < 41bp 1 0.00815672292134913 1 0.137729078531265 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58097554 chr3:58097543 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_25528 0 0 1 0 2 FLNB chr3:58097608 5'GT 58097608 Upstream 66bp
chr3 58097543 58097543 1 + T C LIHC 58097558 + 58097538 58097578 41 CAGAGTCAAAGTTGACCCTTCCCACGATGCCAGCAAAGTGA CAGAGCCAAAGTTGACCCTTCCCACGATGCCAGCAAAGTGA < 41bp 1 0.0305168220961975 1 0.198926031589508 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58097558 chr3:58097543 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_25529 0 0 1 0 2 FLNB chr3:58097518 3'AG 58097518 Downstream 26bp
chr3 58097543 58097543 1 + T C LIHC 58097558 + 58097538 58097578 41 CAGAGTCAAAGTTGACCCTTCCCACGATGCCAGCAAAGTGA CAGAGCCAAAGTTGACCCTTCCCACGATGCCAGCAAAGTGA < 41bp 1 0.0305168220961975 1 0.198926031589508 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58097558 chr3:58097543 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_25529 0 0 1 0 2 FLNB chr3:58097608 5'GT 58097608 Upstream 66bp
chr3 58097543 58097543 1 + T C LIHC 58097560 + 58097540 58097580 41 GAGTCAAAGTTGACCCTTCCCACGATGCCAGCAAAGTGAAG GAGCCAAAGTTGACCCTTCCCACGATGCCAGCAAAGTGAAG < 41bp 1 0.728962692863778 1 0.37614843249321 experiment 0.542074614272444 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58097560 chr3:58097543 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_25530 0 0 1 0 2 FLNB chr3:58097518 3'AG 58097518 Downstream 26bp
chr3 58097543 58097543 1 + T C LIHC 58097560 + 58097540 58097580 41 GAGTCAAAGTTGACCCTTCCCACGATGCCAGCAAAGTGAAG GAGCCAAAGTTGACCCTTCCCACGATGCCAGCAAAGTGAAG < 41bp 1 0.728962692863778 1 0.37614843249321 experiment 0.542074614272444 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58097560 chr3:58097543 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_25530 0 0 1 0 2 FLNB chr3:58097608 5'GT 58097608 Upstream 66bp
chr8 104438328 104438328 1 + A G LIHC 104438308 + 104438288 104438328 41 GTGATGACAAAACTGTGAAGCAGTGGAAAATGGATGGGCCA GTGATGACAAAACTGTGAAGCAGTGGAAAATGGATGGGCCG < 41bp 1 0.434387378137525 1 0.71207070350647 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438308 chr8:104438328 synonymous SNV . 0 41 hm5C_associated_SNPs_25531 0 0 1 0 2 DCAF13 chr8:104438284 3'AG 104438284 Downstream 45bp
chr8 104438328 104438328 1 + A G LIHC 104438308 + 104438288 104438328 41 GTGATGACAAAACTGTGAAGCAGTGGAAAATGGATGGGCCA GTGATGACAAAACTGTGAAGCAGTGGAAAATGGATGGGCCG < 41bp 1 0.434387378137525 1 0.71207070350647 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438308 chr8:104438328 synonymous SNV . 0 41 hm5C_associated_SNPs_25531 0 0 1 0 2 DCAF13 chr8:104438373 5'GT 104438373 Upstream 46bp
chr8 104438328 104438328 1 + A G LIHC 104438331 + 104438311 104438351 41 TGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCC TGGAAAATGGATGGGCCGGGCTATGGAGACGAGGAAGAGCC < 41bp 1 0.416259466610858 1 0.340858519077301 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438331 chr8:104438328 synonymous SNV . 0 18 hm5C_associated_SNPs_25532 0 0 1 0 2 DCAF13 chr8:104438284 3'AG 104438284 Downstream 45bp
chr8 104438328 104438328 1 + A G LIHC 104438331 + 104438311 104438351 41 TGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCC TGGAAAATGGATGGGCCGGGCTATGGAGACGAGGAAGAGCC < 41bp 1 0.416259466610858 1 0.340858519077301 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438331 chr8:104438328 synonymous SNV . 0 18 hm5C_associated_SNPs_25532 0 0 1 0 2 DCAF13 chr8:104438373 5'GT 104438373 Upstream 46bp
chr12 1517374 1517374 1 + C T LIHC 1517370 + 1517350 1517390 41 CGAGGATGACCACTTCAAATCCTCCCATTCCAATCAAACAA CGAGGATGACCACTTCAAATCCTCTCATTCCAATCAAACAA < 41bp 1 0.0371360967308439 1 0.0997641980648041 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ERC1 ENSG00000082805 CDS Human protein_coding chr12:1517370 chr12:1517374 synonymous SNV . 0 25 hm5C_associated_SNPs_25533 0 0 1 0 2 ERC1 chr12:1517315 3'AG 1517315 Downstream 60bp
chr12 1517374 1517374 1 + C T LIHC 1517370 + 1517350 1517390 41 CGAGGATGACCACTTCAAATCCTCCCATTCCAATCAAACAA CGAGGATGACCACTTCAAATCCTCTCATTCCAATCAAACAA < 41bp 1 0.0371360967308439 1 0.0997641980648041 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ERC1 ENSG00000082805 CDS Human protein_coding chr12:1517370 chr12:1517374 synonymous SNV . 0 25 hm5C_associated_SNPs_25533 0 0 1 0 2 ERC1 chr12:1517413 5'GT 1517413 Upstream 40bp
chr12 52636851 52636851 1 + G T LIHC 52636840 + 52636820 52636860 41 GGGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGAT GGGAAGCATGGGGACGACCTCCGGAATACCCTGAATGAGAT < 41bp 1 0.652853275596094 1 0.810622572898865 experiment 0.694293448807812 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636840 chr12:52636851 nonsynonymous SNV 0.249 3 32 hm5C_associated_SNPs_25534 0 0 0 0 2 KRT7 chr12:52636796 3'AG 52636796 Downstream 56bp
chr12 52636851 52636851 1 + G T LIHC 52636840 + 52636820 52636860 41 GGGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGAT GGGAAGCATGGGGACGACCTCCGGAATACCCTGAATGAGAT < 41bp 1 0.652853275596094 1 0.810622572898865 experiment 0.694293448807812 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636840 chr12:52636851 nonsynonymous SNV 0.249 3 32 hm5C_associated_SNPs_25534 0 0 0 0 2 KRT7 chr12:52636921 5'GT 52636921 Upstream 71bp
chr12 52636851 52636851 1 + G T LIHC 52636841 + 52636821 52636861 41 GGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGATT GGAAGCATGGGGACGACCTCCGGAATACCCTGAATGAGATT < 41bp 1 0.607643408773854 1 0.89053350687027 experiment 0.784713182452291 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636841 chr12:52636851 nonsynonymous SNV 0.249 3 31 hm5C_associated_SNPs_25535 0 0 0 0 2 KRT7 chr12:52636796 3'AG 52636796 Downstream 56bp
chr12 52636851 52636851 1 + G T LIHC 52636841 + 52636821 52636861 41 GGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGATT GGAAGCATGGGGACGACCTCCGGAATACCCTGAATGAGATT < 41bp 1 0.607643408773854 1 0.89053350687027 experiment 0.784713182452291 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636841 chr12:52636851 nonsynonymous SNV 0.249 3 31 hm5C_associated_SNPs_25535 0 0 0 0 2 KRT7 chr12:52636921 5'GT 52636921 Upstream 71bp
chr12 100995485 100995485 1 + A G LIHC 100995493 + 100995473 100995513 41 GTCAACTGATTGATGTTCTTCAAAACATGGTGAAAACATGC GTCAACTGATTGGTGTTCTTCAAAACATGGTGAAAACATGC < 41bp 1 0.472044892114235 1 0.318189650774002 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:100995493 chr12:100995485 nonsynonymous SNV 0.972 0 13 hm5C_associated_SNPs_25536 0 0 1 0 2 GAS2L3 chr12:100995416 3'AG 100995416 Downstream 70bp
chr12 100995485 100995485 1 + A G LIHC 100995493 + 100995473 100995513 41 GTCAACTGATTGATGTTCTTCAAAACATGGTGAAAACATGC GTCAACTGATTGGTGTTCTTCAAAACATGGTGAAAACATGC < 41bp 1 0.472044892114235 1 0.318189650774002 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:100995493 chr12:100995485 nonsynonymous SNV 0.972 0 13 hm5C_associated_SNPs_25536 0 0 1 0 2 GAS2L3 chr12:100995531 5'GT 100995531 Upstream 47bp
chr14 64596894 64596894 1 + A G LIHC 64596874 + 64596854 64596894 41 TGTTGCAAGGCATGGTGGAACTGGTGAAGATTGGGAAGGAA TGTTGCAAGGCATGGTGGAACTGGTGAAGATTGGGAAGGAG < 41bp 1 0.2671431688523 1 0.240295857191086 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64596874 chr14:64596894 synonymous SNV . 0 41 hm5C_associated_SNPs_25537 0 0 1 0 1 SYNE2 chr14:64596966 5'GT 64596966 Upstream 73bp
chr17 30535215 30535215 1 + T C LIHC 30535224 + 30535204 30535244 41 AGTATTTCACCTACTGATTTCTGCAGGAAACACAAAATGCC AGTATTTCACCCACTGATTTCTGCAGGAAACACAAAATGCC < 41bp 1 0.775853361656385 1 0.789387464523315 experiment 0.44829327668723 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHOT1 ENSG00000126858 CDS Human protein_coding chr17:30535224 chr17:30535215 synonymous SNV . 0 12 hm5C_associated_SNPs_25539 0 0 1 0 1 RHOT1 chr17:30535126 3'AG 30535126 Downstream 90bp
chr1 43917179 43917179 1 - T C LIHC 43917159 - 43917139 43917179 41 AGCCCAGCAGCCCCGGAGAGCTGAATTTCCCCTATCTGTTT GGCCCAGCAGCCCCGGAGAGCTGAATTTCCCCTATCTGTTT < 41bp 1 0.692410549916984 1 0.283607184886932 experiment 0.615178900166032 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HYI ENSG00000178922 CDS Human protein_coding chr1:43917159 chr1:43917179 nonsynonymous SNV 0.985 4 1 hm5C_associated_SNPs_25540 0 0 0 0 3 HYI chr1:43917081 5'GT 43917081 Upstream 99bp
chr1 43917179 43917179 1 - T C LIHC 43917159 - 43917139 43917179 41 AGCCCAGCAGCCCCGGAGAGCTGAATTTCCCCTATCTGTTT GGCCCAGCAGCCCCGGAGAGCTGAATTTCCCCTATCTGTTT < 41bp 1 0.692410549916984 1 0.283607184886932 experiment 0.615178900166032 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HYI ENSG00000178922 CDS Human protein_coding chr1:43917159 chr1:43917179 nonsynonymous SNV 0.985 4 1 hm5C_associated_SNPs_25540 0 0 0 0 3 HYI chr1:43917099 5'GT 43917099 Upstream 81bp
chr1 43917179 43917179 1 - T C LIHC 43917159 - 43917139 43917179 41 AGCCCAGCAGCCCCGGAGAGCTGAATTTCCCCTATCTGTTT GGCCCAGCAGCCCCGGAGAGCTGAATTTCCCCTATCTGTTT < 41bp 1 0.692410549916984 1 0.283607184886932 experiment 0.615178900166032 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HYI ENSG00000178922 CDS Human protein_coding chr1:43917159 chr1:43917179 nonsynonymous SNV 0.985 4 1 hm5C_associated_SNPs_25540 0 0 0 0 3 HYI chr1:43917215 3'AG 43917215 Downstream 37bp
chr6 144876004 144876004 1 + T C LIHC 144875991 + 144875971 144876011 41 TCTATATTCTTCAGCAAGCCCGACGGGATCCACTCACCAAA TCTATATTCTTCAGCAAGCCCGACGGGATCCACCCACCAAA < 41bp 1 0.231110542985648 1 0.320373117923737 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144875991 chr6:144876004 nonsynonymous SNV 0.945 1 34 hm5C_associated_SNPs_25541 0 0 1 0 1 UTRN chr6:144876029 5'GT 144876029 Upstream 26bp
chr7 100204221 100204221 1 + C T LIHC 100204239 + 100204219 100204259 41 TCCGGAGAAAACAGAGGAATCTCCTTCAGCCCCTGGTGAGT TCTGGAGAAAACAGAGGAATCTCCTTCAGCCCCTGGTGAGT < 41bp 1 0.397313670673595 1 0.227355778217316 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100204239 chr7:100204221 nonsynonymous SNV 0.000 0 3 hm5C_associated_SNPs_25542 0 0 0 0 1 PCOLCE chr7:100204253 5'GT 100204253 Upstream 33bp
chr11 73638346 73638346 1 + A G LIHC 73638335 + 73638315 73638355 41 ATTCTTGTGTTTTAGGTAGCCACATGGGAGAAGCAGATCTA ATTCTTGTGTTTTAGGTAGCCACATGGGAGAGGCAGATCTA < 41bp 1 0.634320567872387 1 0.857091784477234 experiment 0.731358864255226 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PAAF1 ENSG00000175575 CDS Human protein_coding chr11:73638335 chr11:73638346 nonsynonymous SNV 0.999 2 32 hm5C_associated_SNPs_25543 0 0 1 0 1 PAAF1 chr11:73638330 3'AG 73638330 Downstream 17bp
chr11 124496923 124496923 1 + A G LIHC 124496905 + 124496885 124496925 41 AGTGCCCAGACCAGAAGTGTCTATATACCTGTCAGATCAAG AGTGCCCAGACCAGAAGTGTCTATATACCTGTCAGATCGAG < 41bp 1 0.611134023400643 1 0.265113681554794 experiment 0.777731953198714 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124496905 chr11:124496923 nonsynonymous SNV 0.974 1 39 hm5C_associated_SNPs_25544 0 0 1 0 1 TBRG1 chr11:124496946 5'GT 124496946 Upstream 24bp
chr12 100995491 100995491 1 + T C LIHC 100995493 + 100995473 100995513 41 GTCAACTGATTGATGTTCTTCAAAACATGGTGAAAACATGC GTCAACTGATTGATGTTCCTCAAAACATGGTGAAAACATGC < 41bp 1 0.434711183635513 1 0.465515077114105 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:100995493 chr12:100995491 nonsynonymous SNV 1.000 5 19 hm5C_associated_SNPs_25545 0 0 1 0 2 GAS2L3 chr12:100995416 3'AG 100995416 Downstream 76bp
chr12 100995491 100995491 1 + T C LIHC 100995493 + 100995473 100995513 41 GTCAACTGATTGATGTTCTTCAAAACATGGTGAAAACATGC GTCAACTGATTGATGTTCCTCAAAACATGGTGAAAACATGC < 41bp 1 0.434711183635513 1 0.465515077114105 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:100995493 chr12:100995491 nonsynonymous SNV 1.000 5 19 hm5C_associated_SNPs_25545 0 0 1 0 2 GAS2L3 chr12:100995531 5'GT 100995531 Upstream 41bp
chr1 229783443 229783443 1 + A G LIHC 229783428 + 229783408 229783448 41 TCCCTTTGGACCATCTGAAGCCGCTGGAGTATGGAAGCGTC TCCCTTTGGACCATCTGAAGCCGCTGGAGTATGGAGGCGTC < 41bp 1 0.300075686737741 1 0.179400891065598 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control URB2 ENSG00000135763 CDS Human protein_coding chr1:229783428 chr1:229783443 nonsynonymous SNV 0.003 1 36 hm5C_associated_SNPs_25549 0 0 0 0 1 URB2 chr1:229783499 5'GT 229783499 Upstream 57bp
chr3 52325053 52325053 1 + T C LIHC 52325038 + 52325018 52325058 41 GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCCGCGGG < 41bp 1 0.621188020627033 1 0.759957551956177 experiment 0.757623958745933 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52325038 chr3:52325053 nonsynonymous SNV 0.008 3 36 hm5C_associated_SNPs_25550 0 0 1 0 2 GLYCTK chr3:52324976 3'AG 52324976 Downstream 78bp
chr3 52325053 52325053 1 + T C LIHC 52325038 + 52325018 52325058 41 GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCCGCGGG < 41bp 1 0.621188020627033 1 0.759957551956177 experiment 0.757623958745933 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52325038 chr3:52325053 nonsynonymous SNV 0.008 3 36 hm5C_associated_SNPs_25550 0 0 1 0 2 GLYCTK chr3:52325127 5'GT 52325127 Upstream 75bp
chr14 59970624 59970624 1 + A G LIHC 59970605 + 59970585 59970625 41 TTCTGGTCAGAAAGAAAAGACTTATTGTTCTCTTCAGCCAC TTCTGGTCAGAAAGAAAAGACTTATTGTTCTCTTCAGCCGC < 41bp 1 0.190683008038393 1 0.0456917881965637 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control JKAMP ENSG00000050130 CDS Human protein_coding chr14:59970605 chr14:59970624 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_25551 0 0 1 0 1 JKAMP chr14:59970572 3'AG 59970572 Downstream 53bp
chr19 48259062 48259062 1 + T C LIHC 48259063 + 48259043 48259083 41 GAGCTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGGTGC GAGCTCGGAGCTGACAGACCCGCTCAGGACCCTGAAGGTGC < 41bp 1 0.195357925761303 1 0.032894104719162 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259063 chr19:48259062 nonsynonymous SNV 0.335 4 20 hm5C_associated_SNPs_25552 0 0 1 0 2 NOP53 chr19:48259013 3'AG 48259013 Downstream 50bp
chr19 48259062 48259062 1 + T C LIHC 48259063 + 48259043 48259083 41 GAGCTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGGTGC GAGCTCGGAGCTGACAGACCCGCTCAGGACCCTGAAGGTGC < 41bp 1 0.195357925761303 1 0.032894104719162 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259063 chr19:48259062 nonsynonymous SNV 0.335 4 20 hm5C_associated_SNPs_25552 0 0 1 0 2 NOP53 chr19:48259079 5'GT 48259079 Upstream 18bp
chr2 192160940 192160940 1 + T G LIHC 192160923 + 192160903 192160943 41 AAAGTGGAAGAATACAGGAACAGAAATTTTTATGAACTGAG AAAGTGGAAGAATACAGGAACAGAAATTTTTATGAACGGAG < 41bp 1 0.359335326048238 1 0.558125734329224 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYO1B ENSG00000128641 CDS Human protein_coding chr2:192160923 chr2:192160940 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_25553 0 0 1 0 1 MYO1B chr2:192160952 5'GT 192160952 Upstream 13bp
chr1 183086458 183086458 1 + A G LIHC 183086473 + 183086453 183086493 41 AGATGAGGATGGGTGGCGTGCGGAACAGAGAGATGGCTCTG AGATGGGGATGGGTGGCGTGCGGAACAGAGAGATGGCTCTG < 41bp 1 0.7584056444555 1 0.861978530883789 experiment 0.483188711089001 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183086473 chr1:183086458 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_25554 0 0 1 0 1 LAMC1 chr1:183086455 3'AG 183086455 Downstream 4bp
chr6 74493528 74493528 1 + T C LIHC 74493537 + 74493517 74493557 41 GGGTCTTGGACTAACAACTACTCCAGTGGAGGTATTGTATT GGGTCTTGGACCAACAACTACTCCAGTGGAGGTATTGTATT < 41bp 1 0.682518639187732 1 0.931756734848022 experiment 0.634962721624535 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CD109 ENSG00000156535 CDS Human protein_coding chr6:74493537 chr6:74493528 nonsynonymous SNV 0.880 3 12 hm5C_associated_SNPs_25555 0 0 1 0 2 CD109 chr6:74493430 3'AG 74493430 Downstream 99bp
chr6 74493528 74493528 1 + T C LIHC 74493537 + 74493517 74493557 41 GGGTCTTGGACTAACAACTACTCCAGTGGAGGTATTGTATT GGGTCTTGGACCAACAACTACTCCAGTGGAGGTATTGTATT < 41bp 1 0.682518639187732 1 0.931756734848022 experiment 0.634962721624535 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CD109 ENSG00000156535 CDS Human protein_coding chr6:74493537 chr6:74493528 nonsynonymous SNV 0.880 3 12 hm5C_associated_SNPs_25555 0 0 1 0 2 CD109 chr6:74493547 5'GT 74493547 Upstream 20bp
chr1 207510136 207510136 1 + A C LIHC 207510119 + 207510099 207510139 41 AACTACAGAAGTCTCACCAACTTCTCAGAAAACCACCACAA AACTACAGAAGTCTCACCAACTTCTCAGAAAACCACCCCAA < 41bp 1 0.334968578578205 1 0.807099044322968 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CD55 ENSG00000196352 CDS Human protein_coding chr1:207510119 chr1:207510136 nonsynonymous SNV 0.001 3 38 hm5C_associated_SNPs_25556 0 0 1 0 2 CD55 chr1:207510038 3'AG 207510038 Downstream 99bp
chr1 207510136 207510136 1 + A C LIHC 207510119 + 207510099 207510139 41 AACTACAGAAGTCTCACCAACTTCTCAGAAAACCACCACAA AACTACAGAAGTCTCACCAACTTCTCAGAAAACCACCCCAA < 41bp 1 0.334968578578205 1 0.807099044322968 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CD55 ENSG00000196352 CDS Human protein_coding chr1:207510119 chr1:207510136 nonsynonymous SNV 0.001 3 38 hm5C_associated_SNPs_25556 0 0 1 0 2 CD55 chr1:207510163 5'GT 207510163 Upstream 28bp
chr2 27277583 27277583 1 + T C LIHC 27277595 + 27277575 27277615 41 TCACTTCCTGCCATGGGCTTCGAGAAGATCGAGAGCCCCGT TCACTTCCCGCCATGGGCTTCGAGAAGATCGAGAGCCCCGT < 41bp 1 0.661231717718438 1 0.867565810680389 experiment 0.677536564563125 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27277595 chr2:27277583 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_25557 0 0 1 0 1 AGBL5 chr2:27277498 3'AG 27277498 Downstream 86bp
chr22 39078921 39078921 1 + T C LIHC 39078940 + 39078920 39078960 41 CTTTATGATCCTGGTTCTTCCCGTTGTCTTTGAGACGGAGA CCTTATGATCCTGGTTCTTCCCGTTGTCTTTGAGACGGAGA < 41bp 1 0.287121082855482 1 0.0982420742511749 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078940 chr22:39078921 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_25558 0 0 1 0 2 TOMM22 chr22:39078884 3'AG 39078884 Downstream 38bp
chr22 39078921 39078921 1 + T C LIHC 39078940 + 39078920 39078960 41 CTTTATGATCCTGGTTCTTCCCGTTGTCTTTGAGACGGAGA CCTTATGATCCTGGTTCTTCCCGTTGTCTTTGAGACGGAGA < 41bp 1 0.287121082855482 1 0.0982420742511749 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078940 chr22:39078921 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_25558 0 0 1 0 2 TOMM22 chr22:39079001 5'GT 39079001 Upstream 81bp
chrX 70674056 70674056 1 + T C LIHC 70674049 + 70674029 70674069 41 GTCAGTATACTAAGACTGCCCAGGAGATTGTGAACGTCTGT GTCAGTATACTAAGACTGCCCAGGAGACTGTGAACGTCTGT < 41bp 1 0.603535036977632 1 0.803241491317749 experiment 0.792929926044736 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF1 ENSG00000147133 CDS Human protein_coding chrX:70674049 chrX:70674056 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_25560 0 0 1 1 2 TAF1 chrX:70674020 3'AG 70674020 Downstream 37bp
chrX 70674056 70674056 1 + T C LIHC 70674049 + 70674029 70674069 41 GTCAGTATACTAAGACTGCCCAGGAGATTGTGAACGTCTGT GTCAGTATACTAAGACTGCCCAGGAGACTGTGAACGTCTGT < 41bp 1 0.603535036977632 1 0.803241491317749 experiment 0.792929926044736 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF1 ENSG00000147133 CDS Human protein_coding chrX:70674049 chrX:70674056 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_25560 0 0 1 1 2 TAF1 chrX:70674087 5'GT 70674087 Upstream 32bp
chr19 579633 579633 1 + G A LIHC 579629 + 579609 579649 41 CGTGGTGCTGAAGGAGGACGCGCTGCCCGGCCAGAAAACGG CGTGGTGCTGAAGGAGGACGCGCTACCCGGCCAGAAAACGG < 41bp 1 0.57711063878973 1 0.448272854089737 experiment 0.84577872242054 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579629 chr19:579633 synonymous SNV . 0 25 hm5C_associated_SNPs_25562 0 0 1 0 1 BSG chr19:579656 5'GT 579656 Upstream 24bp
chr19 579633 579633 1 + G A LIHC 579636 + 579616 579656 41 CTGAAGGAGGACGCGCTGCCCGGCCAGAAAACGGAGTTCAA CTGAAGGAGGACGCGCTACCCGGCCAGAAAACGGAGTTCAA < 41bp 1 0.611111491477416 1 0.857751727104187 experiment 0.777777017045168 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579636 chr19:579633 synonymous SNV . 0 18 hm5C_associated_SNPs_25563 0 0 1 0 1 BSG chr19:579656 5'GT 579656 Upstream 24bp
chr19 579633 579633 1 + G A LIHC 579640 + 579620 579660 41 AGGAGGACGCGCTGCCCGGCCAGAAAACGGAGTTCAAGTGA AGGAGGACGCGCTACCCGGCCAGAAAACGGAGTTCAAGTGA < 41bp 1 0.738101769415293 1 0.452865809202194 experiment 0.523796461169414 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579640 chr19:579633 synonymous SNV . 0 14 hm5C_associated_SNPs_25564 0 0 1 0 1 BSG chr19:579656 5'GT 579656 Upstream 24bp
chr11 13750208 13750208 1 + T C LIHC 13750192 + 13750172 13750212 41 CGTTATGGTTTTAATACTATCCTTGTGATCCTCATCTGGCG CGTTATGGTTTTAATACTATCCTTGTGATCCTCATCCGGCG < 41bp 1 0.132808746720881 1 0.0296982526779175 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAR1 ENSG00000197601 CDS Human protein_coding chr11:13750192 chr11:13750208 nonsynonymous SNV 0.999 2 37 hm5C_associated_SNPs_25565 0 0 1 0 1 FAR1 chr11:13750159 3'AG 13750159 Downstream 50bp
chr2 27302028 27302028 1 + A G LIHC 27302048 + 27302028 27302068 41 ACACAGGTTCCAGTGGGGCCCTCAGCCCCGGGGGGCCCCAG GCACAGGTTCCAGTGGGGCCCTCAGCCCCGGGGGGCCCCAG < 41bp 1 0.563945677679229 1 0.254448443651199 experiment 0.872108644641542 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302048 chr2:27302028 nonsynonymous SNV 0.888 3 1 hm5C_associated_SNPs_25566 0 0 0 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 76bp
chr5 72201205 72201205 1 + A G LIHC 72201196 + 72201176 72201216 41 GTTTCTCTGACCAGTTTCCTCTTCCCTTAAAAGAGCGTCTT GTTTCTCTGACCAGTTTCCTCTTCCCTTAGAAGAGCGTCTT < 41bp 1 0.202423791568909 1 0.314120441675186 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72201196 chr5:72201205 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_25568 0 0 1 0 1 TNPO1 chr5:72201130 3'AG 72201130 Downstream 76bp
chr7 44096470 44096470 1 + C A LIHC 44096481 + 44096461 44096501 41 GAGAGTGGCCGCTTCCAGGACGTGGGACCCCAGGCCCCAGT GAGAGTGGCAGCTTCCAGGACGTGGGACCCCAGGCCCCAGT < 41bp 1 0.687636380217094 1 0.548544585704803 experiment 0.624727239565811 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DBNL ENSG00000136279 CDS Human protein_coding chr7:44096481 chr7:44096470 nonsynonymous SNV 0.525 0 10 hm5C_associated_SNPs_25569 0 0 1 0 1 DBNL chr7:44096502 5'GT 44096502 Upstream 33bp
chr10 75525661 75525661 1 + A T LIHC 75525655 + 75525635 75525675 41 GGCTCTTATGAATTCTTGGCCACTGTAGATTACTGCAAGGT GGCTCTTATGAATTCTTGGCCACTGTTGATTACTGCAAGGT < 41bp 1 0.264916997345929 1 0.0857260525226593 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75525655 chr10:75525661 synonymous SNV . 0 27 hm5C_associated_SNPs_25570 0 0 1 0 1 SEC24C chr10:75525673 5'GT 75525673 Upstream 13bp
chr17 49239133 49239133 1 + A T LIHC 49239124 + 49239104 49239144 41 CAGTGATTCTGTGGAGAGTGCAGAGAAGGAGATCGGCTTGT CAGTGATTCTGTGGAGAGTGCAGAGAAGGTGATCGGCTTGT < 41bp 1 0.418884657261603 1 0.364423453807831 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NME1 ENSG00000239672 CDS Human protein_coding chr17:49239124 chr17:49239133 nonsynonymous SNV 0.996 3 30 hm5C_associated_SNPs_25572 0 0 1 0 1 NME1 chr17:49239089 3'AG 49239089 Downstream 45bp
chr19 59057222 59057222 1 + A G LIHC 59057205 + 59057185 59057225 41 TCGGAGCCTCTGTGTGAGACCTGTGTAGAGGCGCACCAGCG TCGGAGCCTCTGTGTGAGACCTGTGTAGAGGCGCACCGGCG < 41bp 1 0.428647883858852 1 0.158044159412384 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59057205 chr19:59057222 nonsynonymous SNV 0.995 3 38 hm5C_associated_SNPs_25575 0 0 1 0 2 TRIM28 chr19:59057131 3'AG 59057131 Downstream 92bp
chr19 59057222 59057222 1 + A G LIHC 59057205 + 59057185 59057225 41 TCGGAGCCTCTGTGTGAGACCTGTGTAGAGGCGCACCAGCG TCGGAGCCTCTGTGTGAGACCTGTGTAGAGGCGCACCGGCG < 41bp 1 0.428647883858852 1 0.158044159412384 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59057205 chr19:59057222 nonsynonymous SNV 0.995 3 38 hm5C_associated_SNPs_25575 0 0 1 0 2 TRIM28 chr19:59057263 5'GT 59057263 Upstream 42bp
chr5 82406962 82406962 1 + G C LIHC 82406946 + 82406926 82406966 41 ATTGTTGTCAGGAGCAGGACCAGCTGATGTATACACGTTTA ATTGTTGTCAGGAGCAGGACCAGCTGATGTATACACCTTTA < 41bp 1 0.613078818756614 1 0.328665554523468 experiment 0.773842362486772 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XRCC4 ENSG00000152422 CDS Human protein_coding chr5:82406946 chr5:82406962 synonymous SNV . 0 37 hm5C_associated_SNPs_25576 0 0 0 0 1 XRCC4 chr5:82407022 5'GT 82407022 Upstream 61bp
chr7 4825905 4825905 1 + A T LIHC 4825887 + 4825867 4825907 41 CCCTGGTCTTGCAGGGGAAGCGGCTGCAGTGGACTCGGAAG CCCTGGTCTTGCAGGGGAAGCGGCTGCAGTGGACTCGGTAG < 41bp 1 0.462219061179679 1 0.617867887020111 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4825887 chr7:4825905 nonsynonymous SNV 0.469 2 39 hm5C_associated_SNPs_25577 0 0 1 0 1 AP5Z1 chr7:4825881 3'AG 4825881 Downstream 25bp
chr12 79689884 79689884 1 + C T LIHC 79689904 + 79689884 79689924 41 CGCCTTGGACATGGGGGGCACATCTGATCCTTACGTGAAAG TGCCTTGGACATGGGGGGCACATCTGATCCTTACGTGAAAG < 41bp 1 0.19808066207731 1 0.214873969554901 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYT1 ENSG00000067715 CDS Human protein_coding chr12:79689904 chr12:79689884 synonymous SNV . 0 1 hm5C_associated_SNPs_25578 0 0 0 0 1 SYT1 chr12:79689849 3'AG 79689849 Downstream 36bp
chr2 27456323 27456323 1 + T G LIHC 27456304 + 27456284 27456324 41 CCGGGTGCTGGGCACCTCCCCTGAAGCCATTGACTCGGCTG CCGGGTGCTGGGCACCTCCCCTGAAGCCATTGACTCGGCGG < 41bp 1 0.65887989972688 1 0.368626415729523 experiment 0.68224020054624 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27456304 chr2:27456323 synonymous SNV . 0 40 hm5C_associated_SNPs_25579 0 0 1 0 1 CAD chr2:27456404 5'GT 27456404 Upstream 82bp
chr17 29554603 29554603 1 + A C LIHC 29554583 + 29554563 29554603 41 AATGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA AATGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAC < 41bp 1 0.13234148994506 1 0.101155281066895 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29554583 chr17:29554603 nonsynonymous SNV 0.999 3 41 hm5C_associated_SNPs_25589 0 0 1 0 2 NF1 chr17:29554541 3'AG 29554541 Downstream 63bp
chr17 29554603 29554603 1 + A C LIHC 29554583 + 29554563 29554603 41 AATGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA AATGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAC < 41bp 1 0.13234148994506 1 0.101155281066895 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29554583 chr17:29554603 nonsynonymous SNV 0.999 3 41 hm5C_associated_SNPs_25589 0 0 1 0 2 NF1 chr17:29554624 5'GT 29554624 Upstream 22bp
chr16 84884214 84884214 1 + A G LIHC 84884208 + 84884188 84884228 41 CACCAACAAGATCGGTTGTGCTGTGAACACCTGCCGGAAGA CACCAACAAGATCGGTTGTGCTGTGAGCACCTGCCGGAAGA < 41bp 1 0.27718145334324 1 0.0824877321720123 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84884208 chr16:84884214 nonsynonymous SNV 0.999 1 27 hm5C_associated_SNPs_25590 0 0 0 0 2 CRISPLD2 chr16:84884174 3'AG 84884174 Downstream 41bp
chr16 84884214 84884214 1 + A G LIHC 84884208 + 84884188 84884228 41 CACCAACAAGATCGGTTGTGCTGTGAACACCTGCCGGAAGA CACCAACAAGATCGGTTGTGCTGTGAGCACCTGCCGGAAGA < 41bp 1 0.27718145334324 1 0.0824877321720123 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84884208 chr16:84884214 nonsynonymous SNV 0.999 1 27 hm5C_associated_SNPs_25590 0 0 0 0 2 CRISPLD2 chr16:84884289 5'GT 84884289 Upstream 76bp
chr19 11553327 11553327 1 + G A LIHC 11553314 + 11553294 11553334 41 AGAGAGGCCAAAGAGCAGCACCAGAAGCTGTGGGAAGGTAT AGAGAGGCCAAAGAGCAGCACCAGAAGCTGTGGAAAGGTAT < 41bp 1 0.30088728247933 1 0.148816645145416 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553314 chr19:11553327 nonsynonymous SNV 0.999 3 34 hm5C_associated_SNPs_25591 0 0 1 0 1 PRKCSH chr19:11553330 5'GT 11553330 Upstream 4bp
chr19 34895344 34895344 1 + C G LIHC 34895331 + 34895311 34895351 41 GTTTTCACCTGGTCGCCCGGCGGCCATGGCGGCCGTTCTGA GTTTTCACCTGGTCGCCCGGCGGCCATGGCGGCGGTTCTGA < 41bp 1 0.611100063568782 1 0.507500946521759 experiment 0.777799872862435 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDCD2L ENSG00000126249 CDS Human protein_coding chr19:34895331 chr19:34895344 synonymous SNV . 0 34 hm5C_associated_SNPs_25592 0 0 1 0 1 PDCD2L chr19:34895443 5'GT 34895443 Upstream 100bp
chr1 46033677 46033677 1 + A G LIHC 46033668 + 46033648 46033688 41 ACTCAGGCGGGGAGACAACCCCTTCCCCAAGAATGCTGATG ACTCAGGCGGGGAGACAACCCCTTCCCCAGGAATGCTGATG < 41bp 1 0.0457259201472768 1 0.284460932016373 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46033668 chr1:46033677 nonsynonymous SNV 0.987 1 30 hm5C_associated_SNPs_25593 0 0 1 0 1 AKR1A1 chr1:46033654 3'AG 46033654 Downstream 24bp
chr2 153496548 153496548 1 + T A LIHC 153496565 + 153496545 153496585 41 CTCTGATGGAGCAGCAGGATCCAAAGGTAAGAAGTGCCGCA CTCAGATGGAGCAGCAGGATCCAAAGGTAAGAAGTGCCGCA < 41bp 1 0.375510759402877 1 0.443842768669128 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153496565 chr2:153496548 nonsynonymous SNV 0.998 0 4 hm5C_associated_SNPs_25594 0 0 1 0 2 FMNL2 chr2:153496472 3'AG 153496472 Downstream 77bp
chr2 153496548 153496548 1 + T A LIHC 153496565 + 153496545 153496585 41 CTCTGATGGAGCAGCAGGATCCAAAGGTAAGAAGTGCCGCA CTCAGATGGAGCAGCAGGATCCAAAGGTAAGAAGTGCCGCA < 41bp 1 0.375510759402877 1 0.443842768669128 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153496565 chr2:153496548 nonsynonymous SNV 0.998 0 4 hm5C_associated_SNPs_25594 0 0 1 0 2 FMNL2 chr2:153496570 5'GT 153496570 Upstream 23bp
chr2 232576616 232576616 1 + A G LIHC 232576618 + 232576598 232576638 41 AGAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTA AGAATGAGGAAAATGGGGGGCAGGAGGCTGACAATGAGGTA < 41bp 1 0.757973188681717 1 0.633066177368164 experiment 0.484053622636566 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576618 chr2:232576616 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_25595 0 0 1 0 3 PTMA chr2:232576597 3'AG 232576597 Downstream 20bp
chr2 232576616 232576616 1 + A G LIHC 232576618 + 232576598 232576638 41 AGAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTA AGAATGAGGAAAATGGGGGGCAGGAGGCTGACAATGAGGTA < 41bp 1 0.757973188681717 1 0.633066177368164 experiment 0.484053622636566 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576618 chr2:232576616 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_25595 0 0 1 0 3 PTMA chr2:232576600 3'AG 232576600 Downstream 17bp
chr2 232576616 232576616 1 + A G LIHC 232576618 + 232576598 232576638 41 AGAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTA AGAATGAGGAAAATGGGGGGCAGGAGGCTGACAATGAGGTA < 41bp 1 0.757973188681717 1 0.633066177368164 experiment 0.484053622636566 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576618 chr2:232576616 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_25595 0 0 1 0 3 PTMA chr2:232576693 5'GT 232576693 Upstream 78bp
chr2 232576616 232576616 1 + A G LIHC 232576625 + 232576605 232576645 41 GGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAG GGAAAATGGGGGGCAGGAGGCTGACAATGAGGTAGACGAAG < 41bp 1 0.390180423319205 1 0.186501353979111 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232576625 chr2:232576616 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_25596 0 0 1 0 3 PTMA chr2:232576597 3'AG 232576597 Downstream 20bp
chr2 232576616 232576616 1 + A G LIHC 232576625 + 232576605 232576645 41 GGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAG GGAAAATGGGGGGCAGGAGGCTGACAATGAGGTAGACGAAG < 41bp 1 0.390180423319205 1 0.186501353979111 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232576625 chr2:232576616 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_25596 0 0 1 0 3 PTMA chr2:232576600 3'AG 232576600 Downstream 17bp
chr2 232576616 232576616 1 + A G LIHC 232576625 + 232576605 232576645 41 GGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAG GGAAAATGGGGGGCAGGAGGCTGACAATGAGGTAGACGAAG < 41bp 1 0.390180423319205 1 0.186501353979111 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232576625 chr2:232576616 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_25596 0 0 1 0 3 PTMA chr2:232576693 5'GT 232576693 Upstream 78bp
chr7 90355912 90355912 1 + G T LIHC 90355900 + 90355880 90355920 41 GATATGTGTCACAAAGATGTCTACACGGAACTGCCAGGGAA GATATGTGTCACAAAGATGTCTACACGGAACTTCCAGGGAA < 41bp 1 0.583280024069713 1 0.111333012580872 experiment 0.833439951860574 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355900 chr7:90355912 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_25598 0 0 1 0 1 CDK14 chr7:90355881 3'AG 90355881 Downstream 32bp
chr7 90355912 90355912 1 + G T LIHC 90355903 + 90355883 90355923 41 ATGTGTCACAAAGATGTCTACACGGAACTGCCAGGGAATGG ATGTGTCACAAAGATGTCTACACGGAACTTCCAGGGAATGG < 41bp 1 0.357516538751933 1 0.0752006471157074 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355903 chr7:90355912 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_25599 0 0 1 0 1 CDK14 chr7:90355881 3'AG 90355881 Downstream 32bp
chr7 90355912 90355912 1 + G T LIHC 90355905 + 90355885 90355925 41 GTGTCACAAAGATGTCTACACGGAACTGCCAGGGAATGGAC GTGTCACAAAGATGTCTACACGGAACTTCCAGGGAATGGAC < 41bp 1 0.467541020276291 1 0.353830397129059 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355905 chr7:90355912 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_25600 0 0 1 0 1 CDK14 chr7:90355881 3'AG 90355881 Downstream 32bp
chr9 72659509 72659509 1 + T C LIHC 72659501 + 72659481 72659521 41 ACTCGCTTTGTGCCCGCAGCCCTGCAGCTCGCCGGTGCCCT ACTCGCTTTGTGCCCGCAGCCCTGCAGCCCGCCGGTGCCCT < 41bp 1 0.241496047462904 1 0.752311944961548 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659501 chr9:72659509 nonsynonymous SNV 0.121 1 29 hm5C_associated_SNPs_25601 0 0 0 0 1 MAMDC2 chr9:72659500 3'AG 72659500 Downstream 10bp
chr9 72659509 72659509 1 + T C LIHC 72659505 + 72659485 72659525 41 GCTTTGTGCCCGCAGCCCTGCAGCTCGCCGGTGCCCTCGAC GCTTTGTGCCCGCAGCCCTGCAGCCCGCCGGTGCCCTCGAC < 41bp 1 0.510219802556661 1 0.389741063117981 experiment 0.979560394886678 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659505 chr9:72659509 nonsynonymous SNV 0.121 1 25 hm5C_associated_SNPs_25602 0 0 0 0 1 MAMDC2 chr9:72659500 3'AG 72659500 Downstream 10bp
chr9 72659509 72659509 1 + T C LIHC 72659508 + 72659488 72659528 41 TTGTGCCCGCAGCCCTGCAGCTCGCCGGTGCCCTCGACCTG TTGTGCCCGCAGCCCTGCAGCCCGCCGGTGCCCTCGACCTG < 41bp 1 0.537462622884673 1 0.0701201260089874 experiment 0.925074754230655 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659508 chr9:72659509 nonsynonymous SNV 0.121 1 22 hm5C_associated_SNPs_25603 0 0 0 0 1 MAMDC2 chr9:72659500 3'AG 72659500 Downstream 10bp
chr9 72659509 72659509 1 + T C LIHC 72659513 + 72659493 72659533 41 CCCGCAGCCCTGCAGCTCGCCGGTGCCCTCGACCTGCCCGC CCCGCAGCCCTGCAGCCCGCCGGTGCCCTCGACCTGCCCGC < 41bp 1 0.53555589261171 1 0.852473258972168 experiment 0.92888821477658 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659513 chr9:72659509 nonsynonymous SNV 0.121 1 17 hm5C_associated_SNPs_25604 0 0 0 0 1 MAMDC2 chr9:72659500 3'AG 72659500 Downstream 10bp
chr9 72659509 72659509 1 + T C LIHC 72659519 + 72659499 72659539 41 GCCCTGCAGCTCGCCGGTGCCCTCGACCTGCCCGCTGGGTC GCCCTGCAGCCCGCCGGTGCCCTCGACCTGCCCGCTGGGTC < 41bp 1 0.434541100955389 1 0.156776428222656 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659519 chr9:72659509 nonsynonymous SNV 0.121 1 11 hm5C_associated_SNPs_25605 0 0 0 0 1 MAMDC2 chr9:72659500 3'AG 72659500 Downstream 10bp
chr9 72659509 72659509 1 + T C LIHC 72659522 + 72659502 72659542 41 CTGCAGCTCGCCGGTGCCCTCGACCTGCCCGCTGGGTCCTG CTGCAGCCCGCCGGTGCCCTCGACCTGCCCGCTGGGTCCTG < 41bp 1 0.718644410165121 1 0.218587547540665 experiment 0.562711179669759 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659522 chr9:72659509 nonsynonymous SNV 0.121 1 8 hm5C_associated_SNPs_25606 0 0 0 0 1 MAMDC2 chr9:72659500 3'AG 72659500 Downstream 10bp
chr9 72659509 72659509 1 + T C LIHC 72659529 + 72659509 72659549 41 TCGCCGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTT CCGCCGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTT < 41bp 1 0.382594533875501 1 0.280925750732422 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659529 chr9:72659509 nonsynonymous SNV 0.121 1 1 hm5C_associated_SNPs_25607 0 0 0 0 1 MAMDC2 chr9:72659500 3'AG 72659500 Downstream 10bp
chr12 57599015 57599015 1 + A G LIHC 57599013 + 57598993 57599033 41 GACTGCGGGGACGGCTCTGACGAGGAGGACTGCAGCATCGG GACTGCGGGGACGGCTCTGACGGGGAGGACTGCAGCATCGG < 41bp 1 0.620747715613747 1 0.957612454891205 experiment 0.758504568772506 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599013 chr12:57599015 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_25608 0 0 1 0 1 LRP1 chr12:57599032 5'GT 57599032 Upstream 18bp
chr14 103805201 103805201 1 + A G LIHC 103805206 + 103805186 103805226 41 AGAACAATTGAGGAGAGGGTCAATATCCTCTTTGATTTTGT AGAACAATTGAGGAGGGGGTCAATATCCTCTTTGATTTTGT < 41bp 1 0.244893254157619 1 0.354290693998337 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103805206 chr14:103805201 nonsynonymous SNV 0.744 3 16 hm5C_associated_SNPs_25609 0 0 1 0 1 EIF5 chr14:103805230 5'GT 103805230 Upstream 30bp
chr14 103805201 103805201 1 + A G LIHC 103805213 + 103805193 103805233 41 TTGAGGAGAGGGTCAATATCCTCTTTGATTTTGTTAAGGTA TTGAGGAGGGGGTCAATATCCTCTTTGATTTTGTTAAGGTA < 41bp 1 0.308993100449506 1 0.492608666419983 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103805213 chr14:103805201 nonsynonymous SNV 0.744 3 9 hm5C_associated_SNPs_25610 0 0 1 0 1 EIF5 chr14:103805230 5'GT 103805230 Upstream 30bp
chr5 132427026 132427026 1 + A G LIHC 132427041 + 132427021 132427061 41 AAATGAGGAGCCAATGGAAACAGATCAGAATGCAAAGGAGG AAATGGGGAGCCAATGGAAACAGATCAGAATGCAAAGGAGG < 41bp 1 0.312521637723719 1 0.474324613809586 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132427041 chr5:132427026 nonsynonymous SNV 0.986 1 6 hm5C_associated_SNPs_25611 0 0 1 0 1 HSPA4 chr5:132427066 5'GT 132427066 Upstream 41bp
chr5 132427026 132427026 1 + A G LIHC 132427046 + 132427026 132427066 41 AGGAGCCAATGGAAACAGATCAGAATGCAAAGGAGGAAGAG GGGAGCCAATGGAAACAGATCAGAATGCAAAGGAGGAAGAG < 41bp 1 0.741853088510143 1 0.303033530712128 experiment 0.516293822979714 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132427046 chr5:132427026 nonsynonymous SNV 0.986 1 1 hm5C_associated_SNPs_25612 0 0 1 0 1 HSPA4 chr5:132427066 5'GT 132427066 Upstream 41bp
chr12 104325389 104325389 1 + A G LIHC 104325380 + 104325360 104325400 41 AAGTAGAGAAGGATCAAGGACGGATGATGAAGTAGTACAGA AAGTAGAGAAGGATCAAGGACGGATGATGGAGTAGTACAGA < 41bp 1 0.448445646332087 1 0.453766793012619 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104325380 chr12:104325389 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_25613 0 0 1 0 2 HSP90B1 chr12:104325390 5'GT 104325390 Upstream 2bp
chr12 104325389 104325389 1 + A G LIHC 104325380 + 104325360 104325400 41 AAGTAGAGAAGGATCAAGGACGGATGATGAAGTAGTACAGA AAGTAGAGAAGGATCAAGGACGGATGATGGAGTAGTACAGA < 41bp 1 0.448445646332087 1 0.453766793012619 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104325380 chr12:104325389 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_25613 0 0 1 0 2 HSP90B1 chr12:104325401 5'GT 104325401 Upstream 13bp
chr12 104325389 104325389 1 + A G LIHC 104325397 + 104325377 104325417 41 GGACGGATGATGAAGTAGTACAGAGGTTTGTGTTCATTTGA GGACGGATGATGGAGTAGTACAGAGGTTTGTGTTCATTTGA < 41bp 1 0.749710378922899 1 0.416449517011642 experiment 0.500579242154202 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104325397 chr12:104325389 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_25614 0 0 1 0 2 HSP90B1 chr12:104325390 5'GT 104325390 Upstream 2bp
chr12 104325389 104325389 1 + A G LIHC 104325397 + 104325377 104325417 41 GGACGGATGATGAAGTAGTACAGAGGTTTGTGTTCATTTGA GGACGGATGATGGAGTAGTACAGAGGTTTGTGTTCATTTGA < 41bp 1 0.749710378922899 1 0.416449517011642 experiment 0.500579242154202 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104325397 chr12:104325389 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_25614 0 0 1 0 2 HSP90B1 chr12:104325401 5'GT 104325401 Upstream 13bp
chr19 11213382 11213382 1 + G T LIHC 11213368 + 11213348 11213388 41 ACCTGCAAATCCGGGGACTTCAGCTGTGGGGGCCGTGTCAA ACCTGCAAATCCGGGGACTTCAGCTGTGGGGGCCTTGTCAA < 41bp 1 0.645470318460755 1 0.651132822036743 experiment 0.709059363078489 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LDLR ENSG00000130164 CDS Human protein_coding chr19:11213368 chr19:11213382 nonsynonymous SNV 0.997 3 35 hm5C_associated_SNPs_25615 0 0 1 0 1 LDLR chr19:11213462 5'GT 11213462 Upstream 81bp
chr19 49422315 49422315 1 + A G LIHC 49422304 + 49422284 49422324 41 CAGCTGGAGAAAGTGTACGACCCAAAGAATGAGGAGGACGA CAGCTGGAGAAAGTGTACGACCCAAAGAATGGGGAGGACGA < 41bp 1 0.240005753703801 1 0.192454725503922 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49422304 chr19:49422315 nonsynonymous SNV 0.996 3 32 hm5C_associated_SNPs_25616 0 0 1 0 2 NUCB1 chr19:49422287 3'AG 49422287 Downstream 29bp
chr19 49422315 49422315 1 + A G LIHC 49422304 + 49422284 49422324 41 CAGCTGGAGAAAGTGTACGACCCAAAGAATGAGGAGGACGA CAGCTGGAGAAAGTGTACGACCCAAAGAATGGGGAGGACGA < 41bp 1 0.240005753703801 1 0.192454725503922 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49422304 chr19:49422315 nonsynonymous SNV 0.996 3 32 hm5C_associated_SNPs_25616 0 0 1 0 2 NUCB1 chr19:49422379 5'GT 49422379 Upstream 65bp
chr19 49422315 49422315 1 + A G LIHC 49422305 + 49422285 49422325 41 AGCTGGAGAAAGTGTACGACCCAAAGAATGAGGAGGACGAC AGCTGGAGAAAGTGTACGACCCAAAGAATGGGGAGGACGAC < 41bp 1 0.390381163985233 1 0.138236075639725 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49422305 chr19:49422315 nonsynonymous SNV 0.996 3 31 hm5C_associated_SNPs_25617 0 0 1 0 2 NUCB1 chr19:49422287 3'AG 49422287 Downstream 29bp
chr19 49422315 49422315 1 + A G LIHC 49422305 + 49422285 49422325 41 AGCTGGAGAAAGTGTACGACCCAAAGAATGAGGAGGACGAC AGCTGGAGAAAGTGTACGACCCAAAGAATGGGGAGGACGAC < 41bp 1 0.390381163985233 1 0.138236075639725 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49422305 chr19:49422315 nonsynonymous SNV 0.996 3 31 hm5C_associated_SNPs_25617 0 0 1 0 2 NUCB1 chr19:49422379 5'GT 49422379 Upstream 65bp
chr3 150264606 150264606 1 + C T LIHC 150264597 + 150264577 150264617 41 TTTCCGGGACAACATGGCGCCGTCCACGCCGCTCTTGACAG TTTCCGGGACAACATGGCGCCGTCCACGCTGCTCTTGACAG < 41bp 1 0.179319471266497 1 0.118523985147476 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF2A ENSG00000144895 CDS Human protein_coding chr3:150264597 chr3:150264606 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_25618 0 0 1 0 1 EIF2A chr3:150264617 5'GT 150264617 Upstream 12bp
chr13 27216423 27216423 1 + A G LIHC 27216436 + 27216416 27216456 41 AGTGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAG AGTGAAGGGGAACATTGAGCCCCGGCACTTGTGCCGGGGAG < 41bp 1 0.552255454354243 1 0.501769125461578 experiment 0.895489091291515 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216436 chr13:27216423 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_25619 0 0 0 0 1 WASF3 chr13:27216398 3'AG 27216398 Downstream 26bp
chr13 27216423 27216423 1 + A G LIHC 27216437 + 27216417 27216457 41 GTGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGC GTGAAGGGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGC < 41bp 1 0.20448829527895 1 0.693219244480133 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216437 chr13:27216423 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_25620 0 0 0 0 1 WASF3 chr13:27216398 3'AG 27216398 Downstream 26bp
chr13 27216423 27216423 1 + A G LIHC 27216438 + 27216418 27216458 41 TGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCT TGAAGGGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCT < 41bp 1 0.591046371406918 1 0.517708778381348 experiment 0.817907257186165 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216438 chr13:27216423 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_25621 0 0 0 0 1 WASF3 chr13:27216398 3'AG 27216398 Downstream 26bp
chr13 27216423 27216423 1 + A G LIHC 27216441 + 27216421 27216461 41 AGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCTCTG AGGGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCTCTG < 41bp 1 0.232570222648624 1 0.0900731980800629 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216441 chr13:27216423 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_25622 0 0 0 0 1 WASF3 chr13:27216398 3'AG 27216398 Downstream 26bp
chr10 17277863 17277863 1 + A T LIHC 17277858 + 17277838 17277878 41 TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG TTTATAGGATTTCTCTGCCTCTTCCTAACTTTTCCTCCCTG < 41bp 1 0.0807183416045682 1 0.564770221710205 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277858 chr10:17277863 synonymous SNV . 0 26 hm5C_associated_SNPs_25623 0 0 1 0 2 VIM chr10:17277845 3'AG 17277845 Downstream 19bp
chr10 17277863 17277863 1 + A T LIHC 17277858 + 17277838 17277878 41 TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG TTTATAGGATTTCTCTGCCTCTTCCTAACTTTTCCTCCCTG < 41bp 1 0.0807183416045682 1 0.564770221710205 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277858 chr10:17277863 synonymous SNV . 0 26 hm5C_associated_SNPs_25623 0 0 1 0 2 VIM chr10:17277888 5'GT 17277888 Upstream 26bp
chr13 26956988 26956988 1 + A G LIHC 26956984 + 26956964 26957004 41 TTTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAA TTTTAGTTATGGGTGAAGGTCCTGGGCGAGGAAGAGTAAAA < 41bp 1 0.136293517271895 1 0.227358371019363 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CDK8 ENSG00000132964 CDS Human protein_coding chr13:26956984 chr13:26956988 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_25624 0 0 1 0 2 CDK8 chr13:26956951 3'AG 26956951 Downstream 38bp
chr13 26956988 26956988 1 + A G LIHC 26956984 + 26956964 26957004 41 TTTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAA TTTTAGTTATGGGTGAAGGTCCTGGGCGAGGAAGAGTAAAA < 41bp 1 0.136293517271895 1 0.227358371019363 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CDK8 ENSG00000132964 CDS Human protein_coding chr13:26956984 chr13:26956988 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_25624 0 0 1 0 2 CDK8 chr13:26957008 5'GT 26957008 Upstream 21bp
chr15 69747786 69747786 1 + A G LIHC 69747788 + 69747768 69747808 41 TGAGGAGAAGAAAGTGGAAGCAAAGAAAGAAGAATCCGAGG TGAGGAGAAGAAAGTGGAGGCAAAGAAAGAAGAATCCGAGG < 41bp 1 0.406574066976159 1 0.592205762863159 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747788 chr15:69747786 nonsynonymous SNV 0.999 0 19 hm5C_associated_SNPs_25625 0 0 1 0 1 RPLP1 chr15:69747767 3'AG 69747767 Downstream 20bp
chr15 69747786 69747786 1 + A G LIHC 69747803 + 69747783 69747823 41 GGAAGCAAAGAAAGAAGAATCCGAGGAGTCTGATGATGACA GGAGGCAAAGAAAGAAGAATCCGAGGAGTCTGATGATGACA < 41bp 1 0.367114913511237 1 0.473363935947418 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747803 chr15:69747786 nonsynonymous SNV 0.999 0 4 hm5C_associated_SNPs_25626 0 0 1 0 1 RPLP1 chr15:69747767 3'AG 69747767 Downstream 20bp
chr19 10794137 10794137 1 + T C LIHC 10794136 + 10794116 10794156 41 TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG TGCCCTAGAAAAGCTTTTCCCCGACACCCCTCTCGCCCTTG < 41bp 1 0.203426261450726 1 0.301589816808701 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794136 chr19:10794137 synonymous SNV . 0 22 hm5C_associated_SNPs_25628 0 0 1 0 2 ILF3 chr19:10794042 3'AG 10794042 Downstream 96bp
chr19 10794137 10794137 1 + T C LIHC 10794136 + 10794116 10794156 41 TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG TGCCCTAGAAAAGCTTTTCCCCGACACCCCTCTCGCCCTTG < 41bp 1 0.203426261450726 1 0.301589816808701 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794136 chr19:10794137 synonymous SNV . 0 22 hm5C_associated_SNPs_25628 0 0 1 0 2 ILF3 chr19:10794218 5'GT 10794218 Upstream 82bp
chr19 10794137 10794137 1 + T C LIHC 10794142 + 10794122 10794162 41 AGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTGATGCCA AGAAAAGCTTTTCCCCGACACCCCTCTCGCCCTTGATGCCA < 41bp 1 0.186230539734211 1 0.0253053903579712 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794142 chr19:10794137 synonymous SNV . 0 16 hm5C_associated_SNPs_25629 0 0 1 0 2 ILF3 chr19:10794042 3'AG 10794042 Downstream 96bp
chr19 10794137 10794137 1 + T C LIHC 10794142 + 10794122 10794162 41 AGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTGATGCCA AGAAAAGCTTTTCCCCGACACCCCTCTCGCCCTTGATGCCA < 41bp 1 0.186230539734211 1 0.0253053903579712 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794142 chr19:10794137 synonymous SNV . 0 16 hm5C_associated_SNPs_25629 0 0 1 0 2 ILF3 chr19:10794218 5'GT 10794218 Upstream 82bp
chr9 134322028 134322028 1 + T C LIHC 134322022 + 134322002 134322042 41 TACATACCATGACATGCTTCCTGCTTTTGTAAGTCTTCAGA TACATACCATGACATGCTTCCTGCTTCTGTAAGTCTTCAGA < 41bp 1 0.0945932987456448 1 0.124847084283829 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134322022 chr9:134322028 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_25631 0 0 1 0 1 PRRC2B chr9:134322029 5'GT 134322029 Upstream 2bp
chrX 151806785 151806785 1 + C T LIHC 151806795 + 151806775 151806815 41 TGCCCGAAGTCGTCCTGAACCTCTTCAACTGGTAAGCGGGC TGCCCGAAGTTGTCCTGAACCTCTTCAACTGGTAAGCGGGC < 41bp 1 0.326709477626887 1 0.211923450231552 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GABRQ ENSG00000147402 CDS Human other chrX:151806795 chrX:151806785 synonymous SNV . 0 11 hm5C_associated_SNPs_25632 0 0 0 0 1 GABRQ chrX:151806805 5'GT 151806805 Upstream 21bp
chr11 65827417 65827417 1 + C T LIHC 65827410 + 65827390 65827430 41 CAAACGGGGCATTGAGAAGCCCCCCTTCGAGCTGCCAGACT CAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACT < 41bp 1 0.165027436850722 1 0.0499608814716339 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827410 chr11:65827417 synonymous SNV . 0 28 hm5C_associated_SNPs_25634 0 0 1 0 1 SF3B2 chr11:65827480 5'GT 65827480 Upstream 64bp
chr11 68204430 68204430 1 + C T LIHC 68204450 + 68204430 68204470 41 CCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG TCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG < 41bp 1 0.141284573499823 1 0.124062776565552 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204450 chr11:68204430 synonymous SNV . 0 1 hm5C_associated_SNPs_25635 0 0 0 0 2 LRP5 chr11:68204357 3'AG 68204357 Downstream 74bp
chr11 68204430 68204430 1 + C T LIHC 68204450 + 68204430 68204470 41 CCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG TCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG < 41bp 1 0.141284573499823 1 0.124062776565552 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204450 chr11:68204430 synonymous SNV . 0 1 hm5C_associated_SNPs_25635 0 0 0 0 2 LRP5 chr11:68204467 5'GT 68204467 Upstream 38bp
chr14 64990075 64990075 1 + A G LIHC 64990092 + 64990072 64990112 41 GAGAGCGTCAGTTGCGACTGCACAATGATATGCACAAAGGC GAGGGCGTCAGTTGCGACTGCACAATGATATGCACAAAGGC < 41bp 1 0.661517049274128 1 0.591456055641174 experiment 0.676965901451744 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZBTB1 ENSG00000126804 CDS Human protein_coding chr14:64990092 chr14:64990075 nonsynonymous SNV 0.999 3 4 hm5C_associated_SNPs_25636 0 0 1 0 1 ZBTB1 chr14:64990120 5'GT 64990120 Upstream 46bp
chr5 33445476 33445476 1 + A G LIHC 33445465 + 33445445 33445485 41 GAGAAGCAAAAGGAAGGAGGCAAAAAGAAGAACAAAGAAGG GAGAAGCAAAAGGAAGGAGGCAAAAAGAAGAGCAAAGAAGG < 41bp 1 0.485802211714121 1 0.517245292663574 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TARS ENSG00000113407 CDS Human protein_coding chr5:33445465 chr5:33445476 nonsynonymous SNV 0.997 0 32 hm5C_associated_SNPs_25638 0 0 1 0 2 TARS chr5:33445430 3'AG 33445430 Downstream 47bp
chr5 33445476 33445476 1 + A G LIHC 33445465 + 33445445 33445485 41 GAGAAGCAAAAGGAAGGAGGCAAAAAGAAGAACAAAGAAGG GAGAAGCAAAAGGAAGGAGGCAAAAAGAAGAGCAAAGAAGG < 41bp 1 0.485802211714121 1 0.517245292663574 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TARS ENSG00000113407 CDS Human protein_coding chr5:33445465 chr5:33445476 nonsynonymous SNV 0.997 0 32 hm5C_associated_SNPs_25638 0 0 1 0 2 TARS chr5:33445510 5'GT 33445510 Upstream 35bp
chr5 33445476 33445476 1 + A G LIHC 33445477 + 33445457 33445497 41 GAAGGAGGCAAAAAGAAGAACAAAGAAGGATCTGGAGATGG GAAGGAGGCAAAAAGAAGAGCAAAGAAGGATCTGGAGATGG < 41bp 1 0.420247619134152 1 0.240496218204498 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TARS ENSG00000113407 CDS Human protein_coding chr5:33445477 chr5:33445476 nonsynonymous SNV 0.997 0 20 hm5C_associated_SNPs_25639 0 0 1 0 2 TARS chr5:33445430 3'AG 33445430 Downstream 47bp
chr5 33445476 33445476 1 + A G LIHC 33445477 + 33445457 33445497 41 GAAGGAGGCAAAAAGAAGAACAAAGAAGGATCTGGAGATGG GAAGGAGGCAAAAAGAAGAGCAAAGAAGGATCTGGAGATGG < 41bp 1 0.420247619134152 1 0.240496218204498 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TARS ENSG00000113407 CDS Human protein_coding chr5:33445477 chr5:33445476 nonsynonymous SNV 0.997 0 20 hm5C_associated_SNPs_25639 0 0 1 0 2 TARS chr5:33445510 5'GT 33445510 Upstream 35bp
chr5 73045745 73045745 1 + T C LIHC 73045760 + 73045740 73045780 41 GGATCTCATCAGCGACATGTCATGATTGCAGAGCGCATCGA GGATCCCATCAGCGACATGTCATGATTGCAGAGCGCATCGA < 41bp 1 0.723840711003684 1 0.09555983543396 experiment 0.552318577992632 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF28 ENSG00000214944 CDS Human protein_coding chr5:73045760 chr5:73045745 synonymous SNV . 0 6 hm5C_associated_SNPs_25640 0 0 0 0 2 ARHGEF28 chr5:73045662 3'AG 73045662 Downstream 84bp
chr5 73045745 73045745 1 + T C LIHC 73045760 + 73045740 73045780 41 GGATCTCATCAGCGACATGTCATGATTGCAGAGCGCATCGA GGATCCCATCAGCGACATGTCATGATTGCAGAGCGCATCGA < 41bp 1 0.723840711003684 1 0.09555983543396 experiment 0.552318577992632 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF28 ENSG00000214944 CDS Human protein_coding chr5:73045760 chr5:73045745 synonymous SNV . 0 6 hm5C_associated_SNPs_25640 0 0 0 0 2 ARHGEF28 chr5:73045809 5'GT 73045809 Upstream 65bp
chr12 132588968 132588968 1 + G T LIHC 132588948 + 132588928 132588968 41 GACCCAGAGTCCCACGCAGCCCAGTCCGGGGCCGGGGCAGG GACCCAGAGTCCCACGCAGCCCAGTCCGGGGCCGGGGCAGT < 41bp 1 0.232307560786784 1 0.15048611164093 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588948 chr12:132588968 nonsynonymous SNV 0.028 0 41 hm5C_associated_SNPs_25641 0 0 0 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 46bp
chr12 132588968 132588968 1 + G T LIHC 132588949 + 132588929 132588969 41 ACCCAGAGTCCCACGCAGCCCAGTCCGGGGCCGGGGCAGGC ACCCAGAGTCCCACGCAGCCCAGTCCGGGGCCGGGGCAGTC < 41bp 1 0.231507806698053 1 0.0931199193000793 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588949 chr12:132588968 nonsynonymous SNV 0.028 0 40 hm5C_associated_SNPs_25642 0 0 0 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 46bp
chr12 132588968 132588968 1 + G T LIHC 132588953 + 132588933 132588973 41 AGAGTCCCACGCAGCCCAGTCCGGGGCCGGGGCAGGCCTTG AGAGTCCCACGCAGCCCAGTCCGGGGCCGGGGCAGTCCTTG < 41bp 1 0.650435613305895 1 0.915719747543335 experiment 0.699128773388211 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588953 chr12:132588968 nonsynonymous SNV 0.028 0 36 hm5C_associated_SNPs_25643 0 0 0 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 46bp
chr12 132588968 132588968 1 + G T LIHC 132588959 + 132588939 132588979 41 CCACGCAGCCCAGTCCGGGGCCGGGGCAGGCCTTGCAGAAT CCACGCAGCCCAGTCCGGGGCCGGGGCAGTCCTTGCAGAAT < 41bp 1 0.527104659806573 1 0.657947897911072 experiment 0.945790680386854 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588959 chr12:132588968 nonsynonymous SNV 0.028 0 30 hm5C_associated_SNPs_25644 0 0 0 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 46bp
chr12 132588968 132588968 1 + G T LIHC 132588960 + 132588940 132588980 41 CACGCAGCCCAGTCCGGGGCCGGGGCAGGCCTTGCAGAATG CACGCAGCCCAGTCCGGGGCCGGGGCAGTCCTTGCAGAATG < 41bp 1 0.767107784300298 1 0.759454607963562 experiment 0.465784431399404 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588960 chr12:132588968 nonsynonymous SNV 0.028 0 29 hm5C_associated_SNPs_25645 0 0 0 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 46bp
chr12 132588968 132588968 1 + G T LIHC 132588965 + 132588945 132588985 41 AGCCCAGTCCGGGGCCGGGGCAGGCCTTGCAGAATGTGCGT AGCCCAGTCCGGGGCCGGGGCAGTCCTTGCAGAATGTGCGT < 41bp 1 0.220054064098921 1 0.25644850730896 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588965 chr12:132588968 nonsynonymous SNV 0.028 0 24 hm5C_associated_SNPs_25646 0 0 0 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 46bp
chr15 41854881 41854881 1 + G A LIHC 41854884 + 41854864 41854904 41 AACTACGAAGATCGGGGGACCCGCTCCCTCTCCATCTGTTT AACTACGAAGATCGGGGAACCCGCTCCCTCTCCATCTGTTT < 41bp 1 0.0832928276879509 1 0.104396730661392 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41854884 chr15:41854881 nonsynonymous SNV 0.972 0 18 hm5C_associated_SNPs_25647 0 0 0 0 1 TYRO3 chr15:41854916 5'GT 41854916 Upstream 36bp
chr15 41854881 41854881 1 + G A LIHC 41854885 + 41854865 41854905 41 ACTACGAAGATCGGGGGACCCGCTCCCTCTCCATCTGTTTT ACTACGAAGATCGGGGAACCCGCTCCCTCTCCATCTGTTTT < 41bp 1 0.179770978360441 1 0.0665972232818604 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41854885 chr15:41854881 nonsynonymous SNV 0.972 0 17 hm5C_associated_SNPs_25648 0 0 0 0 1 TYRO3 chr15:41854916 5'GT 41854916 Upstream 36bp
chr18 29116339 29116339 1 + T C LIHC 29116350 + 29116330 29116370 41 GTTTCTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAA GTTTCTCCGCCATTGACAAACCACCTGGCATGGCAGAAAAA < 41bp 1 0.12201825906349 1 0.139023840427399 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116350 chr18:29116339 nonsynonymous SNV 0.664 1 10 hm5C_associated_SNPs_25649 0 0 1 0 1 DSG2 chr18:29116392 5'GT 29116392 Upstream 54bp
chr18 29116339 29116339 1 + T C LIHC 29116354 + 29116334 29116374 41 CTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAATGGA CTCCGCCATTGACAAACCACCTGGCATGGCAGAAAAATGGA < 41bp 1 0.425475266180102 1 0.167761027812958 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116354 chr18:29116339 nonsynonymous SNV 0.664 1 6 hm5C_associated_SNPs_25650 0 0 1 0 1 DSG2 chr18:29116392 5'GT 29116392 Upstream 54bp
chr20 18462420 18462420 1 + C T LIHC 18462438 + 18462418 18462458 41 CACAGGTTTGGTCCGGGCACCCTGTGGACTCTGCCCGGTGA CATAGGTTTGGTCCGGGCACCCTGTGGACTCTGCCCGGTGA < 41bp 1 0.326603319430231 1 0.393308371305466 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLR3F ENSG00000132664 CDS Human protein_coding chr20:18462438 chr20:18462420 nonsynonymous SNV 0.687 2 3 hm5C_associated_SNPs_25651 0 0 1 0 1 POLR3F chr20:18462454 5'GT 18462454 Upstream 35bp
chr20 25397755 25397755 1 + A G LIHC 25397762 + 25397742 25397782 41 ATGAAGCAAAGTCAGGTGGACGAAGTGATTTGATACCAACT ATGAAGCAAAGTCGGGTGGACGAAGTGATTTGATACCAACT < 41bp 1 0.366800122324513 1 0.534420609474182 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GINS1 ENSG00000101003 CDS Human protein_coding chr20:25397762 chr20:25397755 synonymous SNV . 0 14 hm5C_associated_SNPs_25652 0 0 1 0 2 GINS1 chr20:25397740 3'AG 25397740 Downstream 16bp
chr20 25397755 25397755 1 + A G LIHC 25397762 + 25397742 25397782 41 ATGAAGCAAAGTCAGGTGGACGAAGTGATTTGATACCAACT ATGAAGCAAAGTCGGGTGGACGAAGTGATTTGATACCAACT < 41bp 1 0.366800122324513 1 0.534420609474182 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GINS1 ENSG00000101003 CDS Human protein_coding chr20:25397762 chr20:25397755 synonymous SNV . 0 14 hm5C_associated_SNPs_25652 0 0 1 0 2 GINS1 chr20:25397838 5'GT 25397838 Upstream 84bp
chr22 22040824 22040824 1 + T C LIHC 22040825 + 22040805 22040845 41 TTCACCTCCACCGCGATGGTCCCGGAGACCACACATGAAGC TTCACCTCCACCGCGATGGCCCCGGAGACCACACATGAAGC < 41bp 1 0.245700617010919 1 0.479937523603439 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040825 chr22:22040824 nonsynonymous SNV 0.035 0 20 hm5C_associated_SNPs_25653 0 0 1 0 2 PPIL2 chr22:22040772 3'AG 22040772 Downstream 53bp
chr22 22040824 22040824 1 + T C LIHC 22040825 + 22040805 22040845 41 TTCACCTCCACCGCGATGGTCCCGGAGACCACACATGAAGC TTCACCTCCACCGCGATGGCCCCGGAGACCACACATGAAGC < 41bp 1 0.245700617010919 1 0.479937523603439 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040825 chr22:22040824 nonsynonymous SNV 0.035 0 20 hm5C_associated_SNPs_25653 0 0 1 0 2 PPIL2 chr22:22040847 5'GT 22040847 Upstream 24bp
chr6 31929371 31929371 1 + T C LIHC 31929378 + 31929358 31929398 41 CAGAGCCTCCATCTCAGGAGCAGTGGGCCATCCCTGTGGAC CAGAGCCTCCATCCCAGGAGCAGTGGGCCATCCCTGTGGAC < 41bp 1 0.277120197907508 1 0.373313963413239 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31929378 chr6:31929371 nonsynonymous SNV . 0 14 hm5C_associated_SNPs_25654 0 0 1 0 2 SKIV2L chr6:31929324 3'AG 31929324 Downstream 48bp
chr6 31929371 31929371 1 + T C LIHC 31929378 + 31929358 31929398 41 CAGAGCCTCCATCTCAGGAGCAGTGGGCCATCCCTGTGGAC CAGAGCCTCCATCCCAGGAGCAGTGGGCCATCCCTGTGGAC < 41bp 1 0.277120197907508 1 0.373313963413239 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31929378 chr6:31929371 nonsynonymous SNV . 0 14 hm5C_associated_SNPs_25654 0 0 1 0 2 SKIV2L chr6:31929452 5'GT 31929452 Upstream 82bp
chr7 55270298 55270298 1 + A G LIHC 55270305 + 55270285 55270325 41 GACAGCATAGACGACACCTTCCTCCCAGTGCCTGGTGAGTG GACAGCATAGACGGCACCTTCCTCCCAGTGCCTGGTGAGTG < 41bp 1 0.0734109581391101 1 0.0574462711811066 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55270305 chr7:55270298 nonsynonymous SNV 0.931 1 14 hm5C_associated_SNPs_25655 0 0 1 0 2 EGFR chr7:55270210 3'AG 55270210 Downstream 89bp
chr7 55270298 55270298 1 + A G LIHC 55270305 + 55270285 55270325 41 GACAGCATAGACGACACCTTCCTCCCAGTGCCTGGTGAGTG GACAGCATAGACGGCACCTTCCTCCCAGTGCCTGGTGAGTG < 41bp 1 0.0734109581391101 1 0.0574462711811066 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55270305 chr7:55270298 nonsynonymous SNV 0.931 1 14 hm5C_associated_SNPs_25655 0 0 1 0 2 EGFR chr7:55270318 5'GT 55270318 Upstream 21bp
chr12 50452876 50452876 1 + T C LIHC 50452871 + 50452851 50452891 41 GCCAAGTCTCCAAGAATGACCTGTATCATGCTGGGGAGCTG GCCAAGTCTCCAAGAATGACCTGTACCATGCTGGGGAGCTG < 41bp 1 0.482457215975387 1 0.117968082427979 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50452871 chr12:50452876 synonymous SNV . 0 26 hm5C_associated_SNPs_25656 0 0 0 0 1 ASIC1 chr12:50452911 5'GT 50452911 Upstream 36bp
chr1 162470036 162470036 1 + A G LIHC 162470019 + 162469999 162470039 41 CTCATTGACTTTGGACTTAGCTTCAAAGAAGGCAATCAGGT CTCATTGACTTTGGACTTAGCTTCAAAGAAGGCAATCGGGT < 41bp 1 0.404748944099756 1 0.123593032360077 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162470019 chr1:162470036 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_25657 0 0 1 0 1 UHMK1 chr1:162470037 5'GT 162470037 Upstream 2bp
chr2 32773060 32773060 1 + A G LIHC 32773043 + 32773023 32773063 41 TGGAACAAGCCTTAACTAAGCAAAGGCTGGAAGAGGAACAT TGGAACAAGCCTTAACTAAGCAAAGGCTGGAAGAGGAGCAT < 41bp 1 0.17874527585826 1 0.526253879070282 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773043 chr2:32773060 synonymous SNV . 0 38 hm5C_associated_SNPs_25658 0 0 1 0 1 BIRC6 chr2:32773081 5'GT 32773081 Upstream 22bp
chr2 55056511 55056511 1 + A G LIHC 55056514 + 55056494 55056534 41 ATGTATGCTTGTGAAGAAGGCTTTGCCACTGGTGGGCGAGA ATGTATGCTTGTGAAGAGGGCTTTGCCACTGGTGGGCGAGA < 41bp 1 0.0241561645372368 1 0.0604739487171173 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EML6 ENSG00000214595 CDS Human protein_coding chr2:55056514 chr2:55056511 synonymous SNV . 0 18 hm5C_associated_SNPs_25659 0 0 1 0 1 EML6 chr2:55056479 3'AG 55056479 Downstream 33bp
chr3 10076415 10076415 1 + A G LIHC 10076403 + 10076383 10076423 41 TAGAAGAATTTGTTAGTGGCCTGGAGTCTTACATTGAGGAT TAGAAGAATTTGTTAGTGGCCTGGAGTCTTACGTTGAGGAT < 41bp 1 0.689720474257349 1 0.42510998249054 experiment 0.620559051485302 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10076403 chr3:10076415 nonsynonymous SNV 0.998 0 33 hm5C_associated_SNPs_25660 1 0 1 0 2 FANCD2 chr3:10076379 3'AG 10076379 Downstream 37bp
chr3 10076415 10076415 1 + A G LIHC 10076403 + 10076383 10076423 41 TAGAAGAATTTGTTAGTGGCCTGGAGTCTTACATTGAGGAT TAGAAGAATTTGTTAGTGGCCTGGAGTCTTACGTTGAGGAT < 41bp 1 0.689720474257349 1 0.42510998249054 experiment 0.620559051485302 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10076403 chr3:10076415 nonsynonymous SNV 0.998 0 33 hm5C_associated_SNPs_25660 1 0 1 0 2 FANCD2 chr3:10076482 5'GT 10076482 Upstream 68bp
chr5 65118671 65118671 1 + G T LIHC 65118652 + 65118632 65118672 41 AATCCTGAAACCTGGGGGATCTCTGGACGGCATGGACATGC AATCCTGAAACCTGGGGGATCTCTGGACGGCATGGACATTC < 41bp 1 0.410987106595632 1 0.163657635450363 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NLN ENSG00000123213 CDS Human protein_coding chr5:65118652 chr5:65118671 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_25661 0 0 1 0 1 NLN chr5:65118609 3'AG 65118609 Downstream 63bp
chr6 26093168 26093168 1 + A G LIHC 26093171 + 26093151 26093191 41 GCACCCAGGCCTGGATCAGCCCCTCATTGTGATCTGGGGTA GCACCCAGGCCTGGATCGGCCCCTCATTGTGATCTGGGGTA < 41bp 1 0.129963397577377 1 0.0348778069019318 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26093171 chr6:26093168 nonsynonymous SNV 0.766 3 18 hm5C_associated_SNPs_25662 0 0 1 0 1 HFE chr6:26093188 5'GT 26093188 Upstream 21bp
chr8 17817570 17817570 1 + G T LIHC 17817579 + 17817559 17817599 41 GCATCAAATTTGGATGATTTCTACCCAGCAGAAGAAGACAC GCATCAAATTTTGATGATTTCTACCCAGCAGAAGAAGACAC < 41bp 1 0.309613906363773 1 0.0736866593360901 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCM1 ENSG00000078674 CDS Human protein_coding chr8:17817579 chr8:17817570 nonsynonymous SNV 0.998 0 12 hm5C_associated_SNPs_25663 0 0 1 0 1 PCM1 chr8:17817523 3'AG 17817523 Downstream 48bp
chr16 67575597 67575597 1 + T C LIHC 67575598 + 67575578 67575618 41 CCCTCAGCTGCTTCTTCTGTCAACAAGGCCTCCACAGTCAC CCCTCAGCTGCTTCTTCTGCCAACAAGGCCTCCACAGTCAC < 41bp 1 0.582581199464387 1 0.386766910552979 experiment 0.834837601071226 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67575598 chr16:67575597 nonsynonymous SNV 0.979 3 20 hm5C_associated_SNPs_25669 0 0 1 0 2 RIPOR1 chr16:67575556 3'AG 67575556 Downstream 42bp
chr16 67575597 67575597 1 + T C LIHC 67575598 + 67575578 67575618 41 CCCTCAGCTGCTTCTTCTGTCAACAAGGCCTCCACAGTCAC CCCTCAGCTGCTTCTTCTGCCAACAAGGCCTCCACAGTCAC < 41bp 1 0.582581199464387 1 0.386766910552979 experiment 0.834837601071226 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67575598 chr16:67575597 nonsynonymous SNV 0.979 3 20 hm5C_associated_SNPs_25669 0 0 1 0 2 RIPOR1 chr16:67575685 5'GT 67575685 Upstream 89bp
chr16 90027412 90027412 1 + C T LIHC 90027406 + 90027386 90027426 41 CCCTGTGTGAGCTCCAAAGTCAGCCACCAAGCTGAATACGA CCCTGTGTGAGCTCCAAAGTCAGCCATCAAGCTGAATACGA < 41bp 1 0.53724156348172 1 0.189499020576477 experiment 0.92551687303656 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90027406 chr16:90027412 synonymous SNV . 0 27 hm5C_associated_SNPs_25670 0 0 1 0 1 DEF8 chr16:90027503 5'GT 90027503 Upstream 92bp
chr20 3781980 3781980 1 + A G LIHC 3781963 + 3781943 3781983 41 CCCCTGGCCCTAGGTCGCTTCTCTCTGACCCCTGCAGAGGG CCCCTGGCCCTAGGTCGCTTCTCTCTGACCCCTGCAGGGGG < 41bp 1 0.187987167211782 1 0.691020667552948 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC25B ENSG00000101224 CDS Human protein_coding chr20:3781963 chr20:3781980 nonsynonymous SNV 0.001 0 38 hm5C_associated_SNPs_25671 0 0 1 0 1 CDC25B chr20:3782035 5'GT 3782035 Upstream 56bp
chr3 32169681 32169681 1 + A G LIHC 32169667 + 32169647 32169687 41 TTTGAAGAAACAGTGAATGGCAGAAAACTGACAGACATCAT TTTGAAGAAACAGTGAATGGCAGAAAACTGACAGGCATCAT < 41bp 1 0.686652427439612 1 0.376573532819748 experiment 0.626695145120776 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GPD1L ENSG00000152642 CDS Human protein_coding chr3:32169667 chr3:32169681 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_25672 0 0 0 0 1 GPD1L chr3:32169745 5'GT 32169745 Upstream 65bp
chr6 38029448 38029448 1 + C T LIHC 38029468 + 38029448 38029488 41 CACCAGTGACAACAACAATACCTCGATAACCACGCCAACTC TACCAGTGACAACAACAATACCTCGATAACCACGCCAACTC < 41bp 1 0.142235336033046 1 0.289323002099991 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFAND3 ENSG00000156639 CDS Human protein_coding chr6:38029468 chr6:38029448 synonymous SNV . 0 1 hm5C_associated_SNPs_25674 0 0 1 0 1 ZFAND3 chr6:38029369 3'AG 38029369 Downstream 80bp
chr6 72003250 72003250 1 + C G LIHC 72003257 + 72003237 72003277 41 ACTTCAAAGATATCCGATATCAAAATGACTTGAGCAATCTT ACTTCAAAGATATGCGATATCAAAATGACTTGAGCAATCTT < 41bp 1 0.679069318450896 1 0.313617646694183 experiment 0.641861363098207 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OGFRL1 ENSG00000119900 CDS Human protein_coding chr6:72003257 chr6:72003250 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_25675 0 0 1 0 2 OGFRL1 chr6:72003236 3'AG 72003236 Downstream 15bp
chr6 72003250 72003250 1 + C G LIHC 72003257 + 72003237 72003277 41 ACTTCAAAGATATCCGATATCAAAATGACTTGAGCAATCTT ACTTCAAAGATATGCGATATCAAAATGACTTGAGCAATCTT < 41bp 1 0.679069318450896 1 0.313617646694183 experiment 0.641861363098207 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OGFRL1 ENSG00000119900 CDS Human protein_coding chr6:72003257 chr6:72003250 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_25675 0 0 1 0 2 OGFRL1 chr6:72003314 5'GT 72003314 Upstream 65bp
chr14 71570336 71570336 1 + T C LIHC 71570324 + 71570304 71570344 41 AGCCACGAACAGCTTAAAGACATTCTTGGGGGTCCTATCAG AGCCACGAACAGCTTAAAGACATTCTTGGGGGCCCTATCAG < 41bp 1 0.0573424923083356 1 0.184081703424454 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71570324 chr14:71570336 synonymous SNV . 0 33 hm5C_associated_SNPs_25676 0 0 1 0 1 PCNX1 chr14:71570386 5'GT 71570386 Upstream 51bp
chr16 21636384 21636384 1 + A G LIHC 21636393 + 21636373 21636413 41 GAGCCAACTAGAGGCAGGGTCATCCTTGCCCTTGTCCTCCC GAGCCAACTAGGGGCAGGGTCATCCTTGCCCTTGTCCTCCC < 41bp 1 0.424764811942876 1 0.126813024282455 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL9 ENSG00000197006 CDS Human protein_coding chr16:21636393 chr16:21636384 synonymous SNV . 0 12 hm5C_associated_SNPs_25677 0 0 1 0 1 METTL9 chr16:21636436 5'GT 21636436 Upstream 53bp
chr20 5932775 5932775 1 + T C LIHC 5932767 + 5932747 5932787 41 GAAAATGGAGAGAAAGAGAACACAGACCTGATCTGAGTAAA GAAAATGGAGAGAAAGAGAACACAGACCCGATCTGAGTAAA < 41bp 1 0.471408572098565 1 0.592701375484467 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MCM8 ENSG00000125885 CDS Human protein_coding chr20:5932767 chr20:5932775 synonymous SNV . 0 29 hm5C_associated_SNPs_25678 0 0 1 0 1 MCM8 chr20:5932809 5'GT 5932809 Upstream 35bp
chr6 31602092 31602092 1 + A G LIHC 31602072 + 31602052 31602092 41 TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGA TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGG < 41bp 1 0.176213707054964 1 0.053958922624588 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602072 chr6:31602092 nonsynonymous SNV 0.998 1 41 hm5C_associated_SNPs_25679 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 80bp
chr6 31602092 31602092 1 + A G LIHC 31602072 + 31602052 31602092 41 TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGA TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGG < 41bp 1 0.176213707054964 1 0.053958922624588 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602072 chr6:31602092 nonsynonymous SNV 0.998 1 41 hm5C_associated_SNPs_25679 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 51bp
chr6 31602092 31602092 1 + A G LIHC 31602073 + 31602053 31602093 41 CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGAT CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGGT < 41bp 1 0.303379174483905 1 0.0938403904438019 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602073 chr6:31602092 nonsynonymous SNV 0.998 1 40 hm5C_associated_SNPs_25680 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 80bp
chr6 31602092 31602092 1 + A G LIHC 31602073 + 31602053 31602093 41 CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGAT CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGGT < 41bp 1 0.303379174483905 1 0.0938403904438019 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602073 chr6:31602092 nonsynonymous SNV 0.998 1 40 hm5C_associated_SNPs_25680 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 51bp
chr6 31602092 31602092 1 + A G LIHC 31602074 + 31602054 31602094 41 TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATA TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGGTA < 41bp 1 0.382271196382369 1 0.196896582841873 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602074 chr6:31602092 nonsynonymous SNV 0.998 1 39 hm5C_associated_SNPs_25681 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 80bp
chr6 31602092 31602092 1 + A G LIHC 31602074 + 31602054 31602094 41 TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATA TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGGTA < 41bp 1 0.382271196382369 1 0.196896582841873 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602074 chr6:31602092 nonsynonymous SNV 0.998 1 39 hm5C_associated_SNPs_25681 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 51bp
chr6 31602092 31602092 1 + A G LIHC 31602076 + 31602056 31602096 41 AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACA AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGGTACA < 41bp 1 0.45947714736414 1 0.814906477928162 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602076 chr6:31602092 nonsynonymous SNV 0.998 1 37 hm5C_associated_SNPs_25682 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 80bp
chr6 31602092 31602092 1 + A G LIHC 31602076 + 31602056 31602096 41 AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACA AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGGTACA < 41bp 1 0.45947714736414 1 0.814906477928162 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602076 chr6:31602092 nonsynonymous SNV 0.998 1 37 hm5C_associated_SNPs_25682 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 51bp
chr6 31602092 31602092 1 + A G LIHC 31602080 + 31602060 31602100 41 TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCA TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGGTACAGGCA < 41bp 1 0.434314640073583 1 0.84959888458252 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602080 chr6:31602092 nonsynonymous SNV 0.998 1 33 hm5C_associated_SNPs_25683 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 80bp
chr6 31602092 31602092 1 + A G LIHC 31602080 + 31602060 31602100 41 TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCA TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGGTACAGGCA < 41bp 1 0.434314640073583 1 0.84959888458252 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602080 chr6:31602092 nonsynonymous SNV 0.998 1 33 hm5C_associated_SNPs_25683 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 51bp
chr15 79185884 79185884 1 + T C LIHC 79185883 + 79185863 79185903 41 ATATTTTTGTCTTCATAGCTCTTTTATCTTCCTGCCAAGAA ATATTTTTGTCTTCATAGCTCCTTTATCTTCCTGCCAAGAA < 41bp 1 0.0169744174343105 1 0.0831121206283569 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79185883 chr15:79185884 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_25684 0 0 1 0 2 MORF4L1 chr15:79185881 3'AG 79185881 Downstream 4bp
chr15 79185884 79185884 1 + T C LIHC 79185883 + 79185863 79185903 41 ATATTTTTGTCTTCATAGCTCTTTTATCTTCCTGCCAAGAA ATATTTTTGTCTTCATAGCTCCTTTATCTTCCTGCCAAGAA < 41bp 1 0.0169744174343105 1 0.0831121206283569 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79185883 chr15:79185884 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_25684 0 0 1 0 2 MORF4L1 chr15:79185969 5'GT 79185969 Upstream 86bp
chr22 42042966 42042966 1 + T A LIHC 42042976 + 42042956 42042996 41 TCCAGAAGGCTCTCAAGCCTCCTCCAATAAAGCTCTATCGG TCCAGAAGGCACTCAAGCCTCCTCCAATAAAGCTCTATCGG < 41bp 1 0.0958681951273633 1 0.207510054111481 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42042976 chr22:42042966 synonymous SNV . 0 11 hm5C_associated_SNPs_25685 0 0 1 0 1 XRCC6 chr22:42042900 3'AG 42042900 Downstream 67bp
chr3 127323790 127323790 1 + A G LIHC 127323809 + 127323789 127323829 41 GAGCGGGCCACGGAGGACGGCGAGGAGGACGAGGAGATGAT GGGCGGGCCACGGAGGACGGCGAGGAGGACGAGGAGATGAT < 41bp 1 0.693100456250976 1 0.554031848907471 experiment 0.613799087498047 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127323809 chr3:127323790 nonsynonymous SNV 0.939 2 2 hm5C_associated_SNPs_25686 0 0 1 0 2 MCM2 chr3:127323720 3'AG 127323720 Downstream 71bp
chr3 127323790 127323790 1 + A G LIHC 127323809 + 127323789 127323829 41 GAGCGGGCCACGGAGGACGGCGAGGAGGACGAGGAGATGAT GGGCGGGCCACGGAGGACGGCGAGGAGGACGAGGAGATGAT < 41bp 1 0.693100456250976 1 0.554031848907471 experiment 0.613799087498047 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127323809 chr3:127323790 nonsynonymous SNV 0.939 2 2 hm5C_associated_SNPs_25686 0 0 1 0 2 MCM2 chr3:127323739 3'AG 127323739 Downstream 52bp
chr11 75508294 75508294 1 + T G LIHC 75508290 + 75508270 75508310 41 CATCATCGTGGTCGGGGGTGCGGCTGAGTCTCTGAGCTCCA CATCATCGTGGTCGGGGGTGCGGCGGAGTCTCTGAGCTCCA < 41bp 1 0.701999457903666 1 0.524019956588745 experiment 0.596001084192667 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75508290 chr11:75508294 synonymous SNV . 0 25 hm5C_associated_SNPs_25687 0 0 1 0 2 DGAT2 chr11:75508203 3'AG 75508203 Downstream 92bp
chr11 75508294 75508294 1 + T G LIHC 75508290 + 75508270 75508310 41 CATCATCGTGGTCGGGGGTGCGGCTGAGTCTCTGAGCTCCA CATCATCGTGGTCGGGGGTGCGGCGGAGTCTCTGAGCTCCA < 41bp 1 0.701999457903666 1 0.524019956588745 experiment 0.596001084192667 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75508290 chr11:75508294 synonymous SNV . 0 25 hm5C_associated_SNPs_25687 0 0 1 0 2 DGAT2 chr11:75508377 5'GT 75508377 Upstream 84bp
chr11 118277757 118277757 1 + T C LIHC 118277750 + 118277730 118277770 41 CTGAGATCCCTAGAGCTATTCAGAGCCTGAAAAAAATAGTC CTGAGATCCCTAGAGCTATTCAGAGCCCGAAAAAAATAGTC < 41bp 1 0.713705695141029 1 0.891548871994019 experiment 0.572588609717942 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ATP5L ENSG00000167283 CDS Human protein_coding chr11:118277750 chr11:118277757 nonsynonymous SNV 0.998 1 28 hm5C_associated_SNPs_25688 0 0 1 0 1 ATP5L chr11:118277812 5'GT 118277812 Upstream 56bp
chr8 23104294 23104294 1 + A G LIHC 23104304 + 23104284 23104324 41 GAGGACGAGGAGCGCATGTCCTTCCTGTTCTCCGCTTTCAA GAGGACGAGGGGCGCATGTCCTTCCTGTTCTCCGCTTTCAA < 41bp 1 0.182721769649868 1 0.0657308399677277 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23104304 chr8:23104294 nonsynonymous SNV 0.997 4 11 hm5C_associated_SNPs_25690 0 0 1 1 1 CHMP7 chr8:23104337 5'GT 23104337 Upstream 44bp
chr4 119631228 119631228 1 + C A LIHC 119631220 + 119631200 119631240 41 GAAACATATGCATCCTATTTCAGTGCTCCTAATTCCTACTT GAAACATATGCATCCTATTTCAGTGCTCATAATTCCTACTT < 41bp 1 0.542298589512218 1 0.268441736698151 experiment 0.915402820975564 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control METTL14 ENSG00000145388 CDS Human protein_coding chr4:119631220 chr4:119631228 nonsynonymous SNV 0.920 3 29 hm5C_associated_SNPs_25692 0 0 1 0 1 METTL14 chr4:119631153 3'AG 119631153 Downstream 76bp
chr10 6265921 6265921 1 + A G LIHC 6265930 + 6265910 6265950 41 TTCAATTTCAGAGGAGATGCCCTACCTGAAATGCCCTCTTC TTCAATTTCAGGGGAGATGCCCTACCTGAAATGCCCTCTTC < 41bp 1 0.0517619766228927 1 0.123281687498093 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6265930 chr10:6265921 nonsynonymous SNV 0.996 2 12 hm5C_associated_SNPs_25693 0 0 1 0 2 PFKFB3 chr10:6265921 3'AG 6265921 Downstream 1bp
chr10 6265921 6265921 1 + A G LIHC 6265930 + 6265910 6265950 41 TTCAATTTCAGAGGAGATGCCCTACCTGAAATGCCCTCTTC TTCAATTTCAGGGGAGATGCCCTACCTGAAATGCCCTCTTC < 41bp 1 0.0517619766228927 1 0.123281687498093 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6265930 chr10:6265921 nonsynonymous SNV 0.996 2 12 hm5C_associated_SNPs_25693 0 0 1 0 2 PFKFB3 chr10:6265983 5'GT 6265983 Upstream 63bp
chr11 65351997 65351997 1 + A G LIHC 65352003 + 65351983 65352023 41 ACATCAAGCAGAACAACAAGCAGGTGAGATGGGGTGGGGGA ACATCAAGCAGAACGACAAGCAGGTGAGATGGGGTGGGGGA < 41bp 1 0.571467909253659 1 0.938925623893738 experiment 0.857064181492681 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352003 chr11:65351997 nonsynonymous SNV 1.000 5 15 hm5C_associated_SNPs_25694 0 0 1 0 2 EHBP1L1 chr11:65351957 3'AG 65351957 Downstream 41bp
chr11 65351997 65351997 1 + A G LIHC 65352003 + 65351983 65352023 41 ACATCAAGCAGAACAACAAGCAGGTGAGATGGGGTGGGGGA ACATCAAGCAGAACGACAAGCAGGTGAGATGGGGTGGGGGA < 41bp 1 0.571467909253659 1 0.938925623893738 experiment 0.857064181492681 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352003 chr11:65351997 nonsynonymous SNV 1.000 5 15 hm5C_associated_SNPs_25694 0 0 1 0 2 EHBP1L1 chr11:65352005 5'GT 65352005 Upstream 9bp
chr19 11141502 11141502 1 + G A LIHC 11141506 + 11141486 11141526 41 AGCACCCGGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGGC AGCACCCGGGCTGGGGAGCTCGGCCTGAACCTCCAGTCGGC < 41bp 1 0.514896454871662 1 0.773830533027649 experiment 0.970207090256675 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141506 chr19:11141502 nonsynonymous SNV 0.987 4 17 hm5C_associated_SNPs_25696 0 0 1 0 2 SMARCA4 chr19:11141406 3'AG 11141406 Downstream 97bp
chr19 11141502 11141502 1 + G A LIHC 11141506 + 11141486 11141526 41 AGCACCCGGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGGC AGCACCCGGGCTGGGGAGCTCGGCCTGAACCTCCAGTCGGC < 41bp 1 0.514896454871662 1 0.773830533027649 experiment 0.970207090256675 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141506 chr19:11141502 nonsynonymous SNV 0.987 4 17 hm5C_associated_SNPs_25696 0 0 1 0 2 SMARCA4 chr19:11141569 5'GT 11141569 Upstream 68bp
chr20 43545448 43545448 1 + A G LIHC 43545459 + 43545439 43545479 41 CATTTTGAGACCCATGAGGCCGCACAGCAGGCCATCAACAC CATTTTGAGGCCCATGAGGCCGCACAGCAGGCCATCAACAC < 41bp 1 0.285151010392997 1 0.0426983833312988 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545459 chr20:43545448 nonsynonymous SNV 0.684 4 10 hm5C_associated_SNPs_25697 0 0 1 0 1 PABPC1L chr20:43545397 3'AG 43545397 Downstream 52bp
chr2 62934345 62934345 1 + A G LIHC 62934334 + 62934314 62934354 41 TTGACTGATCATCATGGCTTCAGTTTGGAAGAGACTGCAGC TTGACTGATCATCATGGCTTCAGTTTGGAAGGGACTGCAGC < 41bp 1 0.109475924049422 1 0.0521164834499359 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EHBP1 ENSG00000115504 CDS Human protein_coding chr2:62934334 chr2:62934345 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_25698 0 0 1 0 1 EHBP1 chr2:62934430 5'GT 62934430 Upstream 86bp
chr7 94043219 94043219 1 + G T LIHC 94043239 + 94043219 94043259 41 GAAAAGGTGAACAGGGTCCCCCTGGTCCTCCAGGCTTCCAG TAAAAGGTGAACAGGGTCCCCCTGGTCCTCCAGGCTTCCAG < 41bp 1 0.139276557953758 1 0.0591371953487396 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94043239 chr7:94043219 nonsynonymous SNV 0.997 3 1 hm5C_associated_SNPs_25701 0 0 0 0 1 COL1A2 chr7:94043259 5'GT 94043259 Upstream 41bp
chr13 111155774 111155774 1 + G C LIHC 111155778 + 111155758 111155798 41 GAACACTGGACCCACTGGGGCGGTGGGCGACAGAGGCCCCA GAACACTGGACCCACTCGGGCGGTGGGCGACAGAGGCCCCA < 41bp 1 0.241706381691861 1 0.474609464406967 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111155778 chr13:111155774 nonsynonymous SNV 0.002 5 17 hm5C_associated_SNPs_25702 0 0 0 0 2 COL4A2 chr13:111155730 3'AG 111155730 Downstream 45bp
chr13 111155774 111155774 1 + G C LIHC 111155778 + 111155758 111155798 41 GAACACTGGACCCACTGGGGCGGTGGGCGACAGAGGCCCCA GAACACTGGACCCACTCGGGCGGTGGGCGACAGAGGCCCCA < 41bp 1 0.241706381691861 1 0.474609464406967 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111155778 chr13:111155774 nonsynonymous SNV 0.002 5 17 hm5C_associated_SNPs_25702 0 0 0 0 2 COL4A2 chr13:111155828 5'GT 111155828 Upstream 55bp
chr14 105858084 105858084 1 + G A LIHC 105858083 + 105858063 105858103 41 CCCTCCTCCCCGTCGGTGAGCGGAGGCCTGTCCTCCCCCAG CCCTCCTCCCCGTCGGTGAGCAGAGGCCTGTCCTCCCCCAG < 41bp 1 0.577727907258478 1 0.817995190620422 experiment 0.844544185483044 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control PACS2 ENSG00000179364 CDS Human protein_coding chr14:105858083 chr14:105858084 nonsynonymous SNV 0.978 2 22 hm5C_associated_SNPs_25704 0 0 0 0 1 PACS2 chr14:105858103 5'GT 105858103 Upstream 20bp
chr17 4856369 4856369 1 + A G LIHC 4856386 + 4856366 4856406 41 AACATCAACAATACTCTGGGCCCTGCTCTGCTGCAAAAGGC AACGTCAACAATACTCTGGGCCCTGCTCTGCTGCAAAAGGC < 41bp 1 0.0729047808846899 1 0.0587864220142365 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ENO3 ENSG00000108515 CDS Human protein_coding chr17:4856386 chr17:4856369 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_25705 0 0 1 0 1 ENO3 chr17:4856346 3'AG 4856346 Downstream 24bp
chr19 11134207 11134207 1 + A G LIHC 11134199 + 11134179 11134219 41 CTTGGGGGCTTCCAGGTGGACCTGAATGAGGAGGAAACCAT CTTGGGGGCTTCCAGGTGGACCTGAATGGGGAGGAAACCAT < 41bp 1 0.296953875449185 1 0.0979980528354645 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11134199 chr19:11134207 nonsynonymous SNV 0.998 3 29 hm5C_associated_SNPs_25706 0 0 1 0 1 SMARCA4 chr19:11134194 3'AG 11134194 Downstream 14bp
chr1 27269167 27269167 1 + A G LIHC 27269155 + 27269135 27269175 41 CCCTGATTGTAAGCAGGATACTGAGGAAGATGAGGAGGAAG CCCTGATTGTAAGCAGGATACTGAGGAAGATGGGGAGGAAG < 41bp 1 0.587806736846 1 0.202516466379166 experiment 0.824386526308001 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NUDC ENSG00000090273 CDS Human protein_coding chr1:27269155 chr1:27269167 nonsynonymous SNV 0.858 1 33 hm5C_associated_SNPs_25707 0 0 1 0 1 NUDC chr1:27269151 3'AG 27269151 Downstream 17bp
chr19 15222216 15222216 1 + T C LIHC 15222222 + 15222202 15222242 41 GCGGTCTGCCTATCTGAGGACCTGTACCCCGATATCAATGT GCGGTCTGCCTATCCGAGGACCTGTACCCCGATATCAATGT < 41bp 1 0.0531692098344624 1 0.0272065103054047 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15222222 chr19:15222216 synonymous SNV . 0 15 hm5C_associated_SNPs_25709 0 0 0 0 2 SYDE1 chr19:15222124 3'AG 15222124 Downstream 93bp
chr19 15222216 15222216 1 + T C LIHC 15222222 + 15222202 15222242 41 GCGGTCTGCCTATCTGAGGACCTGTACCCCGATATCAATGT GCGGTCTGCCTATCCGAGGACCTGTACCCCGATATCAATGT < 41bp 1 0.0531692098344624 1 0.0272065103054047 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15222222 chr19:15222216 synonymous SNV . 0 15 hm5C_associated_SNPs_25709 0 0 0 0 2 SYDE1 chr19:15222250 5'GT 15222250 Upstream 35bp
chr12 123875311 123875311 1 + C T LIHC 123875303 + 123875283 123875323 41 AAGTCAAATGCCAGGGGAAACCATTAGCCGGAATCTACAGG AAGTCAAATGCCAGGGGAAACCATTAGCTGGAATCTACAGG < 41bp 1 0.0553792936996854 1 0.0623107254505157 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KMT5A ENSG00000183955 CDS Human protein_coding chr12:123875303 chr12:123875311 nonsynonymous SNV . 0 29 hm5C_associated_SNPs_25710 0 0 0 0 1 KMT5A chr12:123875333 5'GT 123875333 Upstream 23bp
chr12 123875311 123875311 1 + C T LIHC 123875304 + 123875284 123875324 41 AGTCAAATGCCAGGGGAAACCATTAGCCGGAATCTACAGGA AGTCAAATGCCAGGGGAAACCATTAGCTGGAATCTACAGGA < 41bp 1 0.631301958502848 1 0.468868792057037 experiment 0.737396082994304 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KMT5A ENSG00000183955 CDS Human protein_coding chr12:123875304 chr12:123875311 nonsynonymous SNV . 0 28 hm5C_associated_SNPs_25711 0 0 0 0 1 KMT5A chr12:123875333 5'GT 123875333 Upstream 23bp
chr3 179478906 179478906 1 + A G LIHC 179478903 + 179478883 179478923 41 CCTGTTGTGCTCTGTAGCATCAGACATCGATGAGTCATCAG CCTGTTGTGCTCTGTAGCATCAGGCATCGATGAGTCATCAG < 41bp 1 0.568503819526211 1 0.74445629119873 experiment 0.862992360947579 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control USP13 ENSG00000058056 CDS Human protein_coding chr3:179478903 chr3:179478906 nonsynonymous SNV 0.985 1 24 hm5C_associated_SNPs_25714 0 0 1 0 1 USP13 chr3:179478900 3'AG 179478900 Downstream 7bp
chr11 68822741 68822741 1 + C A LIHC 68822727 + 68822707 68822747 41 ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCCCTGGGA ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCACTGGGA < 41bp 1 0.390504066612155 1 0.082521378993988 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68822727 chr11:68822741 nonsynonymous SNV 0.028 1 35 hm5C_associated_SNPs_25715 0 0 0 0 2 TPCN2 chr11:68822643 3'AG 68822643 Downstream 99bp
chr11 68822741 68822741 1 + C A LIHC 68822727 + 68822707 68822747 41 ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCCCTGGGA ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCACTGGGA < 41bp 1 0.390504066612155 1 0.082521378993988 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68822727 chr11:68822741 nonsynonymous SNV 0.028 1 35 hm5C_associated_SNPs_25715 0 0 0 0 2 TPCN2 chr11:68822820 5'GT 68822820 Upstream 80bp
chr11 94599276 94599276 1 + A G LIHC 94599284 + 94599264 94599304 41 CAGACCTCTCTTACCAGCAGCCAGCTGGCTGAGGAAAAGAA CAGACCTCTCTTGCCAGCAGCCAGCTGGCTGAGGAAAAGAA < 41bp 1 0.0385683011105878 1 0.161795824766159 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94599284 chr11:94599276 nonsynonymous SNV 0.994 2 13 hm5C_associated_SNPs_25716 0 0 1 0 1 AMOTL1 chr11:94599333 5'GT 94599333 Upstream 58bp
chr11 94599276 94599276 1 + A G LIHC 94599292 + 94599272 94599312 41 TCTTACCAGCAGCCAGCTGGCTGAGGAAAAGAAGGAAGAGA TCTTGCCAGCAGCCAGCTGGCTGAGGAAAAGAAGGAAGAGA < 41bp 1 0.548608805339603 1 0.474799007177353 experiment 0.902782389320794 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94599292 chr11:94599276 nonsynonymous SNV 0.994 2 5 hm5C_associated_SNPs_25717 0 0 1 0 1 AMOTL1 chr11:94599333 5'GT 94599333 Upstream 58bp
chr12 57604994 57604994 1 + T C LIHC 57604984 + 57604964 57605004 41 TGCTCTGGCTACTGTGAGAACTTTGGCACATGCCAGATGGC TGCTCTGGCTACTGTGAGAACTTTGGCACACGCCAGATGGC < 41bp 1 0.0673438463026827 1 0.208362340927124 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57604984 chr12:57604994 nonsynonymous SNV 0.831 2 31 hm5C_associated_SNPs_25718 0 0 1 0 1 LRP1 chr12:57604959 3'AG 57604959 Downstream 36bp
chr1 182848473 182848473 1 + G A LIHC 182848482 + 182848462 182848502 41 TAGGAGGAATTGGCCAATTTCTGGCCAAAGCAATTGAACCT TAGGAGGAATTAGCCAATTTCTGGCCAAAGCAATTGAACCT < 41bp 1 0.653784118533914 1 0.717533349990845 experiment 0.692431762932171 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182848482 chr1:182848473 nonsynonymous SNV 0.997 2 12 hm5C_associated_SNPs_25719 0 0 1 0 2 DHX9 chr1:182848385 3'AG 182848385 Downstream 89bp
chr1 182848473 182848473 1 + G A LIHC 182848482 + 182848462 182848502 41 TAGGAGGAATTGGCCAATTTCTGGCCAAAGCAATTGAACCT TAGGAGGAATTAGCCAATTTCTGGCCAAAGCAATTGAACCT < 41bp 1 0.653784118533914 1 0.717533349990845 experiment 0.692431762932171 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182848482 chr1:182848473 nonsynonymous SNV 0.997 2 12 hm5C_associated_SNPs_25719 0 0 1 0 2 DHX9 chr1:182848545 5'GT 182848545 Upstream 73bp
chr22 46611213 46611213 1 + G T LIHC 46611227 + 46611207 46611247 41 GTCCACGCGTGTGAAGGCTGCAAGGTAGAGGGGAGCTGGAA GTCCACTCGTGTGAAGGCTGCAAGGTAGAGGGGAGCTGGAA < 41bp 1 0.651453635595447 1 0.330257624387741 experiment 0.697092728809106 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPARA ENSG00000186951 CDS Human protein_coding chr22:46611227 chr22:46611213 nonsynonymous SNV 0.928 4 7 hm5C_associated_SNPs_25720 0 0 1 0 1 PPARA chr22:46611230 5'GT 46611230 Upstream 18bp
chr1 24022333 24022333 1 + A G LIHC 24022327 + 24022307 24022347 41 TCAGCATCGCAGACAAGAAGCGCAGGACAGGCTGCATTGGG TCAGCATCGCAGACAAGAAGCGCAGGGCAGGCTGCATTGGG < 41bp 1 0.781509742526483 1 0.57056725025177 experiment 0.436980514947034 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022327 chr1:24022333 nonsynonymous SNV 0.998 1 27 hm5C_associated_SNPs_25723 0 0 1 0 2 RPL11 chr1:24022288 3'AG 24022288 Downstream 46bp
chr1 24022333 24022333 1 + A G LIHC 24022327 + 24022307 24022347 41 TCAGCATCGCAGACAAGAAGCGCAGGACAGGCTGCATTGGG TCAGCATCGCAGACAAGAAGCGCAGGGCAGGCTGCATTGGG < 41bp 1 0.781509742526483 1 0.57056725025177 experiment 0.436980514947034 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022327 chr1:24022333 nonsynonymous SNV 0.998 1 27 hm5C_associated_SNPs_25723 0 0 1 0 2 RPL11 chr1:24022398 5'GT 24022398 Upstream 66bp
chr10 75871688 75871688 1 + G A LIHC 75871668 + 75871648 75871688 41 CTTCCCGCCATCGACAAAGCCGGGCATCCCAGCCGCTGAGG CTTCCCGCCATCGACAAAGCCGGGCATCCCAGCCGCTGAGA < 41bp 1 0.48045024452835 1 0.742071509361267 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75871668 chr10:75871688 nonsynonymous SNV 1.000 0 41 hm5C_associated_SNPs_25726 0 0 1 0 1 VCL chr10:75871667 3'AG 75871667 Downstream 22bp
chr15 36989565 36989565 1 + T C LIHC 36989549 + 36989529 36989569 41 TTGGTCATGAGCATGAGGTCCTGCTGAGAGACTTGCTTCTA TTGGTCATGAGCATGAGGTCCTGCTGAGAGACTTGCCTCTA < 41bp 1 0.615077207505823 1 0.0928383767604828 experiment 0.769845584988355 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989549 chr15:36989565 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_25727 0 0 0 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 42bp
chr15 36989565 36989565 1 + T C LIHC 36989549 + 36989529 36989569 41 TTGGTCATGAGCATGAGGTCCTGCTGAGAGACTTGCTTCTA TTGGTCATGAGCATGAGGTCCTGCTGAGAGACTTGCCTCTA < 41bp 1 0.615077207505823 1 0.0928383767604828 experiment 0.769845584988355 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989549 chr15:36989565 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_25727 0 0 0 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 27bp
chr15 36989565 36989565 1 + T C LIHC 36989552 + 36989532 36989572 41 GTCATGAGCATGAGGTCCTGCTGAGAGACTTGCTTCTAGAG GTCATGAGCATGAGGTCCTGCTGAGAGACTTGCCTCTAGAG < 41bp 1 0.589259468461454 1 0.330600678920746 experiment 0.821481063077093 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989552 chr15:36989565 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_25728 0 0 0 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 42bp
chr15 36989565 36989565 1 + T C LIHC 36989552 + 36989532 36989572 41 GTCATGAGCATGAGGTCCTGCTGAGAGACTTGCTTCTAGAG GTCATGAGCATGAGGTCCTGCTGAGAGACTTGCCTCTAGAG < 41bp 1 0.589259468461454 1 0.330600678920746 experiment 0.821481063077093 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989552 chr15:36989565 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_25728 0 0 0 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 27bp
chr15 36989565 36989565 1 + T C LIHC 36989560 + 36989540 36989580 41 CATGAGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAACCT CATGAGGTCCTGCTGAGAGACTTGCCTCTAGAGAAAAACCT < 41bp 1 0.185576286050016 1 0.127815186977386 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989560 chr15:36989565 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_25729 0 0 0 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 42bp
chr15 36989565 36989565 1 + T C LIHC 36989560 + 36989540 36989580 41 CATGAGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAACCT CATGAGGTCCTGCTGAGAGACTTGCCTCTAGAGAAAAACCT < 41bp 1 0.185576286050016 1 0.127815186977386 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989560 chr15:36989565 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_25729 0 0 0 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 27bp
chr15 36989565 36989565 1 + T C LIHC 36989564 + 36989544 36989584 41 AGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAACCTGTCC AGGTCCTGCTGAGAGACTTGCCTCTAGAGAAAAACCTGTCC < 41bp 1 0.0689591422738961 1 0.0263063907623291 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989564 chr15:36989565 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_25730 0 0 0 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 42bp
chr15 36989565 36989565 1 + T C LIHC 36989564 + 36989544 36989584 41 AGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAACCTGTCC AGGTCCTGCTGAGAGACTTGCCTCTAGAGAAAAACCTGTCC < 41bp 1 0.0689591422738961 1 0.0263063907623291 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989564 chr15:36989565 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_25730 0 0 0 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 27bp
chr15 36989565 36989565 1 + T C LIHC 36989578 + 36989558 36989598 41 GACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTA GACTTGCCTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTA < 41bp 1 0.0974140400007916 1 0.0868496298789978 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989578 chr15:36989565 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_25731 0 0 0 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 42bp
chr15 36989565 36989565 1 + T C LIHC 36989578 + 36989558 36989598 41 GACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTA GACTTGCCTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTA < 41bp 1 0.0974140400007916 1 0.0868496298789978 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989578 chr15:36989565 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_25731 0 0 0 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 27bp
chr15 36989565 36989565 1 + T C LIHC 36989579 + 36989559 36989599 41 ACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTAT ACTTGCCTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTAT < 41bp 1 0.252422104591837 1 0.0448028445243835 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989579 chr15:36989565 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_25732 0 0 0 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 42bp
chr15 36989565 36989565 1 + T C LIHC 36989579 + 36989559 36989599 41 ACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTAT ACTTGCCTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTAT < 41bp 1 0.252422104591837 1 0.0448028445243835 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989579 chr15:36989565 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_25732 0 0 0 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 27bp
chr15 36989565 36989565 1 + T C LIHC 36989584 + 36989564 36989604 41 CTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTC CCTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTC < 41bp 1 0.123156559687232 1 0.0600318312644958 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989584 chr15:36989565 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_25733 0 0 0 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 42bp
chr15 36989565 36989565 1 + T C LIHC 36989584 + 36989564 36989604 41 CTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTC CCTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTC < 41bp 1 0.123156559687232 1 0.0600318312644958 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989584 chr15:36989565 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_25733 0 0 0 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 27bp
chr16 8735035 8735035 1 + T C LIHC 8735032 + 8735012 8735052 41 TGGACTGGCTGAAGGACGACCTCTGCACAGGTGTGTGTTTC TGGACTGGCTGAAGGACGACCTCCGCACAGGTGTGTGTTTC < 41bp 1 0.422515843557154 1 0.844781875610352 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control METTL22 ENSG00000067365 CDS Human protein_coding chr16:8735032 chr16:8735035 nonsynonymous SNV 0.954 1 24 hm5C_associated_SNPs_25734 0 0 1 0 2 METTL22 chr16:8734988 3'AG 8734988 Downstream 48bp
chr16 8735035 8735035 1 + T C LIHC 8735032 + 8735012 8735052 41 TGGACTGGCTGAAGGACGACCTCTGCACAGGTGTGTGTTTC TGGACTGGCTGAAGGACGACCTCCGCACAGGTGTGTGTTTC < 41bp 1 0.422515843557154 1 0.844781875610352 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control METTL22 ENSG00000067365 CDS Human protein_coding chr16:8735032 chr16:8735035 nonsynonymous SNV 0.954 1 24 hm5C_associated_SNPs_25734 0 0 1 0 2 METTL22 chr16:8735041 5'GT 8735041 Upstream 7bp
chr3 184037534 184037534 1 + C G LIHC 184037529 + 184037509 184037549 41 CAGTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAA CAGTTTCCCACTGGCGTGGCCCCCAGCCCAGTTTTGATGAA < 41bp 1 0.487758140511241 1 0.20311576128006 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037529 chr3:184037534 nonsynonymous SNV 0.972 0 26 hm5C_associated_SNPs_25735 0 0 1 0 2 EIF4G1 chr3:184037477 3'AG 184037477 Downstream 58bp
chr3 184037534 184037534 1 + C G LIHC 184037529 + 184037509 184037549 41 CAGTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAA CAGTTTCCCACTGGCGTGGCCCCCAGCCCAGTTTTGATGAA < 41bp 1 0.487758140511241 1 0.20311576128006 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037529 chr3:184037534 nonsynonymous SNV 0.972 0 26 hm5C_associated_SNPs_25735 0 0 1 0 2 EIF4G1 chr3:184037589 5'GT 184037589 Upstream 56bp
chr3 184037534 184037534 1 + C G LIHC 184037530 + 184037510 184037550 41 AGTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAAC AGTTTCCCACTGGCGTGGCCCCCAGCCCAGTTTTGATGAAC < 41bp 1 0.235341938802485 1 0.0806664228439331 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037530 chr3:184037534 nonsynonymous SNV 0.972 0 25 hm5C_associated_SNPs_25736 0 0 1 0 2 EIF4G1 chr3:184037477 3'AG 184037477 Downstream 58bp
chr3 184037534 184037534 1 + C G LIHC 184037530 + 184037510 184037550 41 AGTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAAC AGTTTCCCACTGGCGTGGCCCCCAGCCCAGTTTTGATGAAC < 41bp 1 0.235341938802485 1 0.0806664228439331 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037530 chr3:184037534 nonsynonymous SNV 0.972 0 25 hm5C_associated_SNPs_25736 0 0 1 0 2 EIF4G1 chr3:184037589 5'GT 184037589 Upstream 56bp
chr3 184037534 184037534 1 + C G LIHC 184037531 + 184037511 184037551 41 GTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAACC GTTTCCCACTGGCGTGGCCCCCAGCCCAGTTTTGATGAACC < 41bp 1 0.161294729184044 1 0.350954204797745 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037531 chr3:184037534 nonsynonymous SNV 0.972 0 24 hm5C_associated_SNPs_25737 0 0 1 0 2 EIF4G1 chr3:184037477 3'AG 184037477 Downstream 58bp
chr3 184037534 184037534 1 + C G LIHC 184037531 + 184037511 184037551 41 GTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAACC GTTTCCCACTGGCGTGGCCCCCAGCCCAGTTTTGATGAACC < 41bp 1 0.161294729184044 1 0.350954204797745 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037531 chr3:184037534 nonsynonymous SNV 0.972 0 24 hm5C_associated_SNPs_25737 0 0 1 0 2 EIF4G1 chr3:184037589 5'GT 184037589 Upstream 56bp
chr7 36445866 36445866 1 + T G LIHC 36445868 + 36445848 36445888 41 CCCTCCCAGACCTCTGCTTTCAAATGCCTCGGCAACTCCAG CCCTCCCAGACCTCTGCTGTCAAATGCCTCGGCAACTCCAG < 41bp 1 0.537058396215402 1 0.436831593513489 experiment 0.925883207569196 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36445868 chr7:36445866 synonymous SNV . 0 19 hm5C_associated_SNPs_25738 0 0 1 0 1 ANLN chr7:36445790 3'AG 36445790 Downstream 77bp
chr7 135272402 135272402 1 + T C LIHC 135272419 + 135272399 135272439 41 CCATTTCACTTAGAAGGGACCTGGAACACTTAATGCTTTTG CCACTTCACTTAGAAGGGACCTGGAACACTTAATGCTTTTG < 41bp 1 0.54430544301665 1 0.520798623561859 experiment 0.9113891139667 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135272419 chr7:135272402 nonsynonymous SNV 1.000 0 4 hm5C_associated_SNPs_25739 0 0 1 1 1 NUP205 chr7:135272323 3'AG 135272323 Downstream 80bp
chr2 217012902 217012902 1 + A G LIHC 217012900 + 217012880 217012920 41 TCCTCCCGCTGAGGTGACAACAAAAAGTCAGATTCCTCTCT TCCTCCCGCTGAGGTGACAACAGAAAGTCAGATTCCTCTCT < 41bp 1 0.746548925010549 1 0.671952843666077 experiment 0.506902149978903 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XRCC5 ENSG00000079246 CDS Human protein_coding chr2:217012900 chr2:217012902 nonsynonymous SNV 0.628 1 23 hm5C_associated_SNPs_25743 0 0 1 0 1 XRCC5 chr2:217012999 5'GT 217012999 Upstream 98bp
chr7 138944069 138944069 1 + A G LIHC 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAGGGGGAAAAG < 41bp 1 0.511936583220759 1 0.654187023639679 experiment 0.976126833558483 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944069 synonymous SNV . 0 32 hm5C_associated_SNPs_25744 0 0 1 0 2 UBN2 chr7:138944013 3'AG 138944013 Downstream 57bp
chr7 138944069 138944069 1 + A G LIHC 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAGGGGGAAAAG < 41bp 1 0.511936583220759 1 0.654187023639679 experiment 0.976126833558483 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944069 synonymous SNV . 0 32 hm5C_associated_SNPs_25744 0 0 1 0 2 UBN2 chr7:138944116 5'GT 138944116 Upstream 48bp
chr11 65347712 65347712 1 + T C LIHC 65347700 + 65347680 65347720 41 TGAGCTGAGCCTCACTCTTTCCGGGGTGCTGCTGCGGGAGG TGAGCTGAGCCTCACTCTTTCCGGGGTGCTGCCGCGGGAGG < 41bp 1 0.635399808416972 1 0.792819678783417 experiment 0.729200383166057 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65347700 chr11:65347712 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_25745 0 0 1 0 1 EHBP1L1 chr11:65347730 5'GT 65347730 Upstream 19bp
chr11 45924665 45924665 1 + T C LIHC 45924677 + 45924657 45924697 41 TCCACGCCTGATGAACCCGACGTCCATTTCTCCAAGAAATT TCCACGCCCGATGAACCCGACGTCCATTTCTCCAAGAAATT < 41bp 1 0.0260784418373857 1 0.0462767779827118 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45924677 chr11:45924665 synonymous SNV . 0 9 hm5C_associated_SNPs_25746 0 0 0 0 1 MAPK8IP1 chr11:45924735 5'GT 45924735 Upstream 71bp
chr2 216995635 216995635 1 + A G LIHC 216995625 + 216995605 216995645 41 CTATGGAAGTGATATAGTTCCTTTCTCTAAAGTGGATGAGG CTATGGAAGTGATATAGTTCCTTTCTCTAAGGTGGATGAGG < 41bp 1 0.0552462578189901 1 0.0216287076473236 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control XRCC5 ENSG00000079246 CDS Human protein_coding chr2:216995625 chr2:216995635 synonymous SNV . 0 31 hm5C_associated_SNPs_25748 0 0 1 0 1 XRCC5 chr2:216995710 5'GT 216995710 Upstream 76bp
chr2 216995635 216995635 1 + A G LIHC 216995648 + 216995628 216995668 41 TCTCTAAAGTGGATGAGGAACAAATGAAATATAAATCGGAG TCTCTAAGGTGGATGAGGAACAAATGAAATATAAATCGGAG < 41bp 1 0.391257752177113 1 0.473851203918457 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout XRCC5 ENSG00000079246 CDS Human protein_coding chr2:216995648 chr2:216995635 synonymous SNV . 0 8 hm5C_associated_SNPs_25749 0 0 1 0 1 XRCC5 chr2:216995710 5'GT 216995710 Upstream 76bp
chr6 43471363 43471363 1 + G C LIHC 43471364 + 43471344 43471384 41 CAGGTCTGTGTCTGTAGGAGCGGTACCGGCTGGACTGCAAC CAGGTCTGTGTCTGTAGGACCGGTACCGGCTGGACTGCAAC < 41bp 1 0.499920433986196 1 0.362479150295258 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TJAP1 ENSG00000137221 CDS Human protein_coding chr6:43471364 chr6:43471363 nonsynonymous SNV 0.998 3 20 hm5C_associated_SNPs_25752 0 0 1 0 2 TJAP1 chr6:43471361 3'AG 43471361 Downstream 3bp
chr6 43471363 43471363 1 + G C LIHC 43471364 + 43471344 43471384 41 CAGGTCTGTGTCTGTAGGAGCGGTACCGGCTGGACTGCAAC CAGGTCTGTGTCTGTAGGACCGGTACCGGCTGGACTGCAAC < 41bp 1 0.499920433986196 1 0.362479150295258 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TJAP1 ENSG00000137221 CDS Human protein_coding chr6:43471364 chr6:43471363 nonsynonymous SNV 0.998 3 20 hm5C_associated_SNPs_25752 0 0 1 0 2 TJAP1 chr6:43471444 5'GT 43471444 Upstream 82bp
chrX 107910381 107910381 1 + A G LIHC 107910384 + 107910364 107910404 41 TCAACCAGGCTTTGGAAACCCAGGACCCCCTGGACTTCCAG TCAACCAGGCTTTGGAAGCCCAGGACCCCCTGGACTTCCAG < 41bp 1 0.473012369048665 1 0.63249534368515 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107910384 chrX:107910381 nonsynonymous SNV 0.995 1 18 hm5C_associated_SNPs_25753 0 0 1 0 2 COL4A5 chrX:107910363 3'AG 107910363 Downstream 19bp
chrX 107910381 107910381 1 + A G LIHC 107910384 + 107910364 107910404 41 TCAACCAGGCTTTGGAAACCCAGGACCCCCTGGACTTCCAG TCAACCAGGCTTTGGAAGCCCAGGACCCCCTGGACTTCCAG < 41bp 1 0.473012369048665 1 0.63249534368515 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107910384 chrX:107910381 nonsynonymous SNV 0.995 1 18 hm5C_associated_SNPs_25753 0 0 1 0 2 COL4A5 chrX:107910413 5'GT 107910413 Upstream 33bp
chr16 56872968 56872968 1 + A T LIHC 56872961 + 56872941 56872981 41 TTGACGAGTATCATAGTGGTCATATTGATAGAGCTTTTGAT TTGACGAGTATCATAGTGGTCATATTGTTAGAGCTTTTGAT < 41bp 1 0.0604699369919819 1 0.0839748978614807 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP93 ENSG00000102900 CDS Human protein_coding chr16:56872961 chr16:56872968 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_25754 0 0 1 0 1 NUP93 chr16:56872981 5'GT 56872981 Upstream 14bp
chr10 45486412 45486412 1 + A G LIHC 45486398 + 45486378 45486418 41 AACCACCTTCTTTTTCAGAGCGGACAAAATTAAAAGACTGC AACCACCTTCTTTTTCAGAGCGGACAAAATTAAAGGACTGC < 41bp 1 0.0746169525604252 1 0.177373051643372 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45486398 chr10:45486412 synonymous SNV . 0 35 hm5C_associated_SNPs_25755 0 0 1 0 1 RASSF4 chr10:45486396 3'AG 45486396 Downstream 17bp
chr9 72879295 72879295 1 + G T LIHC 72879285 + 72879265 72879305 41 GATCGTTGGAGCCAATGGAACAGGGAAGTCGAGCATTGTGT GATCGTTGGAGCCAATGGAACAGGGAAGTCTAGCATTGTGT < 41bp 1 0.793615585293044 1 0.77043479681015 experiment 0.412768829413912 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMC5 ENSG00000198887 CDS Human protein_coding chr9:72879285 chr9:72879295 synonymous SNV . 0 31 hm5C_associated_SNPs_25756 0 0 1 0 2 SMC5 chr9:72879220 3'AG 72879220 Downstream 76bp
chr9 72879295 72879295 1 + G T LIHC 72879285 + 72879265 72879305 41 GATCGTTGGAGCCAATGGAACAGGGAAGTCGAGCATTGTGT GATCGTTGGAGCCAATGGAACAGGGAAGTCTAGCATTGTGT < 41bp 1 0.793615585293044 1 0.77043479681015 experiment 0.412768829413912 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMC5 ENSG00000198887 CDS Human protein_coding chr9:72879285 chr9:72879295 synonymous SNV . 0 31 hm5C_associated_SNPs_25756 0 0 1 0 2 SMC5 chr9:72879361 5'GT 72879361 Upstream 67bp
chr5 179150758 179150758 1 + T A LIHC 179150759 + 179150739 179150779 41 CTTCCTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAA CTTCCTGTGTTCCTGGTTAACCTCTTCTGCTGTTCTGGAAA < 41bp 1 0.111511436859808 1 0.0360018610954285 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179150759 chr5:179150758 nonsynonymous SNV 0.951 1 20 hm5C_associated_SNPs_25757 0 0 1 0 2 CANX chr5:179150661 3'AG 179150661 Downstream 98bp
chr5 179150758 179150758 1 + T A LIHC 179150759 + 179150739 179150779 41 CTTCCTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAA CTTCCTGTGTTCCTGGTTAACCTCTTCTGCTGTTCTGGAAA < 41bp 1 0.111511436859808 1 0.0360018610954285 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179150759 chr5:179150758 nonsynonymous SNV 0.951 1 20 hm5C_associated_SNPs_25757 0 0 1 0 2 CANX chr5:179150780 5'GT 179150780 Upstream 23bp
chr5 179150758 179150758 1 + T A LIHC 179150760 + 179150740 179150780 41 TTCCTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAAG TTCCTGTGTTCCTGGTTAACCTCTTCTGCTGTTCTGGAAAG < 41bp 1 0.297478020483802 1 0.144524693489075 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179150760 chr5:179150758 nonsynonymous SNV 0.951 1 19 hm5C_associated_SNPs_25758 0 0 1 0 2 CANX chr5:179150661 3'AG 179150661 Downstream 98bp
chr5 179150758 179150758 1 + T A LIHC 179150760 + 179150740 179150780 41 TTCCTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAAG TTCCTGTGTTCCTGGTTAACCTCTTCTGCTGTTCTGGAAAG < 41bp 1 0.297478020483802 1 0.144524693489075 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179150760 chr5:179150758 nonsynonymous SNV 0.951 1 19 hm5C_associated_SNPs_25758 0 0 1 0 2 CANX chr5:179150780 5'GT 179150780 Upstream 23bp
chr7 142458441 142458441 1 + G A LIHC 142458431 + 142458411 142458451 41 GCCCCCTTTGATGATGATGACAAGATCGTTGGGGGCTACAA GCCCCCTTTGATGATGATGACAAGATCGTTAGGGGCTACAA < 41bp 1 0.734388869602261 1 0.511703729629517 experiment 0.531222260795478 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458431 chr7:142458441 nonsynonymous SNV 0.121 5 31 hm5C_associated_SNPs_25761 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 36bp
chr7 142458441 142458441 1 + G A LIHC 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATGACAAGATCGTTAGGGGCTACAACTGTGA < 41bp 1 0.303016519188194 1 0.0984964370727539 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458441 nonsynonymous SNV 0.121 5 25 hm5C_associated_SNPs_25762 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 36bp
chr7 142458441 142458441 1 + G A LIHC 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGTTAGGGGCTACAACTGTGAGGAGAATTC < 41bp 1 0.326127192871485 1 0.447760939598083 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458441 nonsynonymous SNV 0.121 5 16 hm5C_associated_SNPs_25763 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 36bp
chr7 142458441 142458441 1 + G A LIHC 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGTTAGGGGCTACAACTGTGAGGAGAATTCTGT < 41bp 1 0.134995956199589 1 0.158316105604172 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458441 nonsynonymous SNV 0.121 5 13 hm5C_associated_SNPs_25764 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 36bp
chr7 142458441 142458441 1 + G A LIHC 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTAGGGGCTACAACTGTGAGGAGAATTCTGTCCC < 41bp 1 0.370365211128717 1 0.231998294591904 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458441 nonsynonymous SNV 0.121 5 10 hm5C_associated_SNPs_25765 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 36bp
chr8 17815276 17815276 1 + A G LIHC 17815261 + 17815241 17815281 41 AACAGAAACTTAGACAGTTACAAGATCTTGTTGCTATGGTA AACAGAAACTTAGACAGTTACAAGATCTTGTTGCTGTGGTA < 41bp 1 0.708620756369387 1 0.479204714298248 experiment 0.582758487261227 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCM1 ENSG00000078674 CDS Human protein_coding chr8:17815261 chr8:17815276 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_25766 0 0 1 0 1 PCM1 chr8:17815284 5'GT 17815284 Upstream 9bp
chr16 31487440 31487440 1 + C A LIHC 31487435 + 31487415 31487455 41 TCTTCGAGAAGGATGGAGCCCCCTTCTGCCCCGAGTGCTAC TCTTCGAGAAGGATGGAGCCCCCTTATGCCCCGAGTGCTAC < 41bp 1 0.126944656244945 1 0.045171707868576 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TGFB1I1 ENSG00000140682 CDS Human protein_coding chr16:31487435 chr16:31487440 nonsynonymous SNV 0.977 3 26 hm5C_associated_SNPs_25767 0 0 0 0 1 TGFB1I1 chr16:31487506 5'GT 31487506 Upstream 67bp
chr6 42957352 42957352 1 + C T LIHC 42957366 + 42957346 42957386 41 CAGGAGCCCCCCAAGGTTGCCAAATGCACAGCCAAGCCTAG CAGGAGTCCCCCAAGGTTGCCAAATGCACAGCCAAGCCTAG < 41bp 1 0.216097504952095 1 0.780898451805115 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42957366 chr6:42957352 nonsynonymous SNV 0.985 0 7 hm5C_associated_SNPs_25768 0 0 1 0 2 PPP2R5D chr6:42957349 3'AG 42957349 Downstream 4bp
chr6 42957352 42957352 1 + C T LIHC 42957366 + 42957346 42957386 41 CAGGAGCCCCCCAAGGTTGCCAAATGCACAGCCAAGCCTAG CAGGAGTCCCCCAAGGTTGCCAAATGCACAGCCAAGCCTAG < 41bp 1 0.216097504952095 1 0.780898451805115 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42957366 chr6:42957352 nonsynonymous SNV 0.985 0 7 hm5C_associated_SNPs_25768 0 0 1 0 2 PPP2R5D chr6:42957426 5'GT 42957426 Upstream 75bp
chr7 142460310 142460310 1 + G A LIHC 142460290 + 142460270 142460310 41 TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTG TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTA < 41bp 1 0.421314848353345 1 0.424307852983475 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460290 chr7:142460310 synonymous SNV . 0 41 hm5C_associated_SNPs_25769 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 29bp
chr7 142460310 142460310 1 + G A LIHC 142460291 + 142460271 142460311 41 GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGG GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTAG < 41bp 1 0.466902484904921 1 0.451462715864182 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460291 chr7:142460310 synonymous SNV . 0 40 hm5C_associated_SNPs_25770 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 29bp
chr7 142460310 142460310 1 + G A LIHC 142460295 + 142460275 142460315 41 CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGC CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTAGATGC < 41bp 1 0.359308187159777 1 0.298450291156769 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460295 chr7:142460310 synonymous SNV . 0 36 hm5C_associated_SNPs_25771 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 29bp
chr7 142460310 142460310 1 + G A LIHC 142460299 + 142460279 142460319 41 CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT CAGCCGACTACCCAGACGAGCTGCAGTGCCTAGATGCTCCT < 41bp 1 0.657356420955035 1 0.144462913274765 experiment 0.685287158089931 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460299 chr7:142460310 synonymous SNV . 0 32 hm5C_associated_SNPs_25772 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 29bp
chr7 142460310 142460310 1 + G A LIHC 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGACGAGCTGCAGTGCCTAGATGCTCCTGTG < 41bp 1 0.264680609506269 1 0.132820010185242 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460310 synonymous SNV . 0 29 hm5C_associated_SNPs_25773 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 29bp
chr7 142460310 142460310 1 + G A LIHC 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGCCTAGATGCTCCTGTGCTGAG < 41bp 1 0.0885184704414073 1 0.110123515129089 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460310 synonymous SNV . 0 24 hm5C_associated_SNPs_25774 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 29bp
chr7 142460310 142460310 1 + G A LIHC 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTAGATGCTCCTGTGCTGAGCCAGGCTA < 41bp 1 0.425831579342952 1 0.278934478759766 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460310 synonymous SNV . 0 16 hm5C_associated_SNPs_25775 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 29bp
chr7 142460310 142460310 1 + G A LIHC 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTAGATGCTCCTGTGCTGAGCCAGGCTAAG < 41bp 1 0.173992860836207 1 0.134485393762589 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460310 synonymous SNV . 0 14 hm5C_associated_SNPs_25776 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 29bp
chr7 142460310 142460310 1 + G A LIHC 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTAGATGCTCCTGTGCTGAGCCAGGCTAAGT < 41bp 1 0.387339826615509 1 0.210872024297714 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460310 synonymous SNV . 0 13 hm5C_associated_SNPs_25777 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 29bp
chr7 142460310 142460310 1 + G A LIHC 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTAGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA < 41bp 1 0.464234956095268 1 0.0647589862346649 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460310 synonymous SNV . 0 8 hm5C_associated_SNPs_25778 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 29bp
chr7 142460310 142460310 1 + G A LIHC 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTAGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC < 41bp 1 0.347822809040691 1 0.293125689029694 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460310 synonymous SNV . 0 3 hm5C_associated_SNPs_25779 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 29bp
chr7 142460310 142460310 1 + G A LIHC 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TAGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC < 41bp 1 0.49319816710671 1 0.701444149017334 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460310 synonymous SNV . 0 2 hm5C_associated_SNPs_25780 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 29bp
chr8 142176419 142176419 1 + C A LIHC 142176432 + 142176412 142176452 41 TGCCATGCCTGAGCTGGCACCCAGGAACTCCTCGCTCCGGC TGCCATGACTGAGCTGGCACCCAGGAACTCCTCGCTCCGGC < 41bp 1 0.495718369640563 1 0.843541324138641 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DENND3 ENSG00000105339 CDS Human protein_coding chr8:142176432 chr8:142176419 nonsynonymous SNV 0.098 0 8 hm5C_associated_SNPs_25781 0 0 0 0 1 DENND3 chr8:142176488 5'GT 142176488 Upstream 70bp
chr17 48156884 48156884 1 + T C LIHC 48156868 + 48156848 48156888 41 ATCCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCTGGCT ATCCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCCGGCT < 41bp 1 0.0751268650373582 1 0.244636505842209 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48156868 chr17:48156884 nonsynonymous SNV 0.998 3 37 hm5C_associated_SNPs_25782 0 0 0 0 2 ITGA3 chr17:48156799 3'AG 48156799 Downstream 86bp
chr17 48156884 48156884 1 + T C LIHC 48156868 + 48156848 48156888 41 ATCCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCTGGCT ATCCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCCGGCT < 41bp 1 0.0751268650373582 1 0.244636505842209 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48156868 chr17:48156884 nonsynonymous SNV 0.998 3 37 hm5C_associated_SNPs_25782 0 0 0 0 2 ITGA3 chr17:48156921 5'GT 48156921 Upstream 38bp
chr17 48156884 48156884 1 + T C LIHC 48156870 + 48156850 48156890 41 CCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCTGGCTGC CCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCCGGCTGC < 41bp 1 0.128816871245152 1 0.154922306537628 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48156870 chr17:48156884 nonsynonymous SNV 0.998 3 35 hm5C_associated_SNPs_25783 0 0 0 0 2 ITGA3 chr17:48156799 3'AG 48156799 Downstream 86bp
chr17 48156884 48156884 1 + T C LIHC 48156870 + 48156850 48156890 41 CCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCTGGCTGC CCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCCGGCTGC < 41bp 1 0.128816871245152 1 0.154922306537628 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48156870 chr17:48156884 nonsynonymous SNV 0.998 3 35 hm5C_associated_SNPs_25783 0 0 0 0 2 ITGA3 chr17:48156921 5'GT 48156921 Upstream 38bp
chr1 225284905 225284905 1 + A G LIHC 225284922 + 225284902 225284942 41 TTTATCTTGAACCAGTCTTTCATTCTTCAGAAATACGAAGG TTTGTCTTGAACCAGTCTTTCATTCTTCAGAAATACGAAGG < 41bp 1 0.0246021273381675 1 0.0378066599369049 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DNAH14 ENSG00000185842 CDS Human protein_coding chr1:225284922 chr1:225284905 nonsynonymous SNV 0.991 1 4 hm5C_associated_SNPs_25784 0 0 1 0 2 DNAH14 chr1:225284820 3'AG 225284820 Downstream 86bp
chr1 225284905 225284905 1 + A G LIHC 225284922 + 225284902 225284942 41 TTTATCTTGAACCAGTCTTTCATTCTTCAGAAATACGAAGG TTTGTCTTGAACCAGTCTTTCATTCTTCAGAAATACGAAGG < 41bp 1 0.0246021273381675 1 0.0378066599369049 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DNAH14 ENSG00000185842 CDS Human protein_coding chr1:225284922 chr1:225284905 nonsynonymous SNV 0.991 1 4 hm5C_associated_SNPs_25784 0 0 1 0 2 DNAH14 chr1:225284941 5'GT 225284941 Upstream 37bp
chr2 231931711 231931711 1 + C T LIHC 231931696 + 231931676 231931716 41 GGAGAAAAAAAACCAATTGACCAGAGATTGGAAGGCATCGT GGAGAAAAAAAACCAATTGACCAGAGATTGGAAGGTATCGT < 41bp 1 0.531048061806363 1 0.0557637214660645 experiment 0.937903876387273 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231931696 chr2:231931711 synonymous SNV . 0 36 hm5C_associated_SNPs_25785 0 0 1 0 1 PSMD1 chr2:231931620 3'AG 231931620 Downstream 92bp
chr7 930603 930603 1 + T G LIHC 930607 + 930587 930627 41 GTATCATTTTCTGCACTCAGCGGACGGGGAGGGCTGTGCCA GTATCATTTTCTGCACGCAGCGGACGGGGAGGGCTGTGCCA < 41bp 1 0.380709907013035 1 0.673163652420044 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GET4 ENSG00000239857 CDS Human protein_coding chr7:930607 chr7:930603 nonsynonymous SNV 0.758 2 17 hm5C_associated_SNPs_25786 0 0 1 0 1 GET4 chr7:930565 3'AG 930565 Downstream 39bp
chr6 144875994 144875994 1 + C A LIHC 144875991 + 144875971 144876011 41 TCTATATTCTTCAGCAAGCCCGACGGGATCCACTCACCAAA TCTATATTCTTCAGCAAGCCCGAAGGGATCCACTCACCAAA < 41bp 1 0.182144976266788 1 0.533278107643127 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144875991 chr6:144875994 synonymous SNV . 0 24 hm5C_associated_SNPs_25788 0 0 1 0 1 UTRN chr6:144876029 5'GT 144876029 Upstream 36bp
chr9 96411461 96411461 1 + T A LIHC 96411460 + 96411440 96411480 41 GCACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCGAG GCACCAACCGCAAGCGGGTCCACAACGTCACCAACCTCGAG < 41bp 1 0.47942363846724 1 0.405287563800812 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96411460 chr9:96411461 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_25790 0 0 1 0 1 PHF2 chr9:96411494 5'GT 96411494 Upstream 34bp
chr12 120878337 120878337 1 + A G LIHC 120878328 + 120878308 120878348 41 AATCCACTTCCAACTGGCTACGAAGATGAATAAAGAGAATC AATCCACTTCCAACTGGCTACGAAGATGAGTAAAGAGAATC < 41bp 1 0.366869113365044 1 0.330143451690674 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COX6A1 ENSG00000111775 CDS Human protein_coding chr12:120878328 chr12:120878337 synonymous SNV . 0 30 hm5C_associated_SNPs_25791 0 0 1 0 1 COX6A1 chr12:120878257 3'AG 120878257 Downstream 81bp
chr17 79970118 79970118 1 + C T LIHC 79970130 + 79970110 79970150 41 TCACCCCTCCAAAAACAGTCCTGGACGACCACACGCAGACC TCACCCCTTCAAAAACAGTCCTGGACGACCACACGCAGACC < 41bp 1 0.687783666471438 1 0.654518842697144 experiment 0.624432667057125 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79970130 chr17:79970118 nonsynonymous SNV 0.027 4 9 hm5C_associated_SNPs_25792 0 0 1 0 3 ASPSCR1 chr17:79970032 3'AG 79970032 Downstream 87bp
chr17 79970118 79970118 1 + C T LIHC 79970130 + 79970110 79970150 41 TCACCCCTCCAAAAACAGTCCTGGACGACCACACGCAGACC TCACCCCTTCAAAAACAGTCCTGGACGACCACACGCAGACC < 41bp 1 0.687783666471438 1 0.654518842697144 experiment 0.624432667057125 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79970130 chr17:79970118 nonsynonymous SNV 0.027 4 9 hm5C_associated_SNPs_25792 0 0 1 0 3 ASPSCR1 chr17:79970107 3'AG 79970107 Downstream 12bp
chr17 79970118 79970118 1 + C T LIHC 79970130 + 79970110 79970150 41 TCACCCCTCCAAAAACAGTCCTGGACGACCACACGCAGACC TCACCCCTTCAAAAACAGTCCTGGACGACCACACGCAGACC < 41bp 1 0.687783666471438 1 0.654518842697144 experiment 0.624432667057125 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79970130 chr17:79970118 nonsynonymous SNV 0.027 4 9 hm5C_associated_SNPs_25792 0 0 1 0 3 ASPSCR1 chr17:79970159 5'GT 79970159 Upstream 42bp
chr19 14580184 14580184 1 + G T LIHC 14580202 + 14580182 14580222 41 CAGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTC CATTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTC < 41bp 1 0.0567589745647676 1 0.0837321877479553 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580202 chr19:14580184 nonsynonymous SNV 0.370 1 3 hm5C_associated_SNPs_25793 0 0 1 0 1 PKN1 chr19:14580153 3'AG 14580153 Downstream 32bp
chr19 14580184 14580184 1 + G T LIHC 14580203 + 14580183 14580223 41 AGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCG ATTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCG < 41bp 1 0.0212692195085179 1 0.0573485493659973 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580203 chr19:14580184 nonsynonymous SNV 0.370 1 2 hm5C_associated_SNPs_25794 0 0 1 0 1 PKN1 chr19:14580153 3'AG 14580153 Downstream 32bp
chr1 160323960 160323960 1 + T G LIHC 160323975 + 160323955 160323995 41 TGCTGTCATCCTCAGGAGGCCAAATCAGTCCCAGCCTCTCC TGCTGGCATCCTCAGGAGGCCAAATCAGTCCCAGCCTCTCC < 41bp 1 0.285545405077149 1 0.0867100059986115 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCSTN ENSG00000162736 CDS Human protein_coding chr1:160323975 chr1:160323960 nonsynonymous SNV 0.380 4 6 hm5C_associated_SNPs_25795 0 0 1 0 1 NCSTN chr1:160323908 3'AG 160323908 Downstream 53bp
chr12 3047308 3047308 1 + A T LIHC 3047297 + 3047277 3047317 41 CAGAACCATGACAGTTTGCTCTCAAGGTGGCAGAACAGAAC CAGAACCATGACAGTTTGCTCTCAAGGTGGCTGAACAGAAC < 41bp 1 0.616935376277058 1 0.743946850299835 experiment 0.766129247445883 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TULP3 ENSG00000078246 CDS Human protein_coding chr12:3047297 chr12:3047308 nonsynonymous SNV 0.888 4 32 hm5C_associated_SNPs_25797 0 0 1 0 1 TULP3 chr12:3047280 3'AG 3047280 Downstream 29bp
chr11 118452209 118452209 1 + G A LIHC 118452203 + 118452183 118452223 41 ATTTTAGAAGATTTGGAGACCCTAAGGCTCTTCTCAAGAGT ATTTTAGAAGATTTGGAGACCCTAAGACTCTTCTCAAGAGT < 41bp 1 0.203939860111198 1 0.117706120014191 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARCN1 ENSG00000095139 CDS Human protein_coding chr11:118452203 chr11:118452209 synonymous SNV . 0 27 hm5C_associated_SNPs_25798 0 0 1 0 1 ARCN1 chr11:118452224 5'GT 118452224 Upstream 16bp
chr3 172098773 172098773 1 + T C LIHC 172098759 + 172098739 172098779 41 GTGGATTTGTATTTCAGCACCTCGAGTAACACAGTTAGAAG GTGGATTTGTATTTCAGCACCTCGAGTAACACAGCTAGAAG < 41bp 1 0.562049723766827 1 0.716703236103058 experiment 0.875900552466346 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172098759 chr3:172098773 synonymous SNV . 0 35 hm5C_associated_SNPs_25802 0 0 1 0 1 FNDC3B chr3:172098756 3'AG 172098756 Downstream 18bp
chr3 172098773 172098773 1 + T C LIHC 172098770 + 172098750 172098790 41 TTTCAGCACCTCGAGTAACACAGTTAGAAGGAAATTCATGT TTTCAGCACCTCGAGTAACACAGCTAGAAGGAAATTCATGT < 41bp 1 0.219243280622569 1 0.480669736862183 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172098770 chr3:172098773 synonymous SNV . 0 24 hm5C_associated_SNPs_25803 0 0 1 0 1 FNDC3B chr3:172098756 3'AG 172098756 Downstream 18bp
chr2 27449453 27449453 1 + A G LIHC 27449451 + 27449431 27449471 41 CTCTGCCCTGGCCAGTAAGGCCACAGGTTATCCACTGGCTT CTCTGCCCTGGCCAGTAAGGCCGCAGGTTATCCACTGGCTT < 41bp 1 0.260059835545723 1 0.123455911874771 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27449451 chr2:27449453 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_25804 0 0 1 0 2 CAD chr2:27449393 3'AG 27449393 Downstream 61bp
chr2 27449453 27449453 1 + A G LIHC 27449451 + 27449431 27449471 41 CTCTGCCCTGGCCAGTAAGGCCACAGGTTATCCACTGGCTT CTCTGCCCTGGCCAGTAAGGCCGCAGGTTATCCACTGGCTT < 41bp 1 0.260059835545723 1 0.123455911874771 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27449451 chr2:27449453 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_25804 0 0 1 0 2 CAD chr2:27449517 5'GT 27449517 Upstream 65bp
chr2 85133149 85133149 1 + A G LIHC 85133155 + 85133135 85133175 41 TAAGAAAATGGCAGACAAACCAGACATGGGGGAAATCGCCA TAAGAAAATGGCAGGCAAACCAGACATGGGGGAAATCGCCA < 41bp 1 0.4563068353025 1 0.229987591505051 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMSB10 ENSG00000034510 CDS Human protein_coding chr2:85133155 chr2:85133149 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_25805 0 0 1 0 1 TMSB10 chr2:85133127 3'AG 85133127 Downstream 23bp
chr6 80741219 80741219 1 + G T LIHC 80741213 + 80741193 80741233 41 TCTTCTTCAGCAAATGAATGCATTTCGGTTAAAGGAAGAAT TCTTCTTCAGCAAATGAATGCATTTCTGTTAAAGGAAGAAT < 41bp 1 0.0285053970717785 1 0.0967293381690979 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TTK ENSG00000112742 CDS Human protein_coding chr6:80741213 chr6:80741219 synonymous SNV . 0 27 hm5C_associated_SNPs_25806 0 0 1 0 2 TTK chr6:80741184 3'AG 80741184 Downstream 36bp
chr6 80741219 80741219 1 + G T LIHC 80741213 + 80741193 80741233 41 TCTTCTTCAGCAAATGAATGCATTTCGGTTAAAGGAAGAAT TCTTCTTCAGCAAATGAATGCATTTCTGTTAAAGGAAGAAT < 41bp 1 0.0285053970717785 1 0.0967293381690979 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TTK ENSG00000112742 CDS Human protein_coding chr6:80741213 chr6:80741219 synonymous SNV . 0 27 hm5C_associated_SNPs_25806 0 0 1 0 2 TTK chr6:80741276 5'GT 80741276 Upstream 58bp
chr11 34969131 34969131 1 + A G LIHC 34969143 + 34969123 34969163 41 AAGTGATGATGGAATCTTGGCCAAAATCGTGGTAAGTTTTT AAGTGATGGTGGAATCTTGGCCAAAATCGTGGTAAGTTTTT < 41bp 1 0.205219330664924 1 0.298294544219971 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PDHX ENSG00000110435 CDS Human protein_coding chr11:34969143 chr11:34969131 nonsynonymous SNV 0.929 4 9 hm5C_associated_SNPs_25807 0 0 1 0 2 PDHX chr11:34969053 3'AG 34969053 Downstream 79bp
chr11 34969131 34969131 1 + A G LIHC 34969143 + 34969123 34969163 41 AAGTGATGATGGAATCTTGGCCAAAATCGTGGTAAGTTTTT AAGTGATGGTGGAATCTTGGCCAAAATCGTGGTAAGTTTTT < 41bp 1 0.205219330664924 1 0.298294544219971 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PDHX ENSG00000110435 CDS Human protein_coding chr11:34969143 chr11:34969131 nonsynonymous SNV 0.929 4 9 hm5C_associated_SNPs_25807 0 0 1 0 2 PDHX chr11:34969153 5'GT 34969153 Upstream 23bp
chr11 34969131 34969131 1 + A G LIHC 34969150 + 34969130 34969170 41 GATGGAATCTTGGCCAAAATCGTGGTAAGTTTTTATTTTAA GGTGGAATCTTGGCCAAAATCGTGGTAAGTTTTTATTTTAA < 41bp 1 0.723349036693129 1 0.909795165061951 experiment 0.553301926613742 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PDHX ENSG00000110435 CDS Human protein_coding chr11:34969150 chr11:34969131 nonsynonymous SNV 0.929 4 2 hm5C_associated_SNPs_25808 0 0 1 0 2 PDHX chr11:34969053 3'AG 34969053 Downstream 79bp
chr11 34969131 34969131 1 + A G LIHC 34969150 + 34969130 34969170 41 GATGGAATCTTGGCCAAAATCGTGGTAAGTTTTTATTTTAA GGTGGAATCTTGGCCAAAATCGTGGTAAGTTTTTATTTTAA < 41bp 1 0.723349036693129 1 0.909795165061951 experiment 0.553301926613742 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PDHX ENSG00000110435 CDS Human protein_coding chr11:34969150 chr11:34969131 nonsynonymous SNV 0.929 4 2 hm5C_associated_SNPs_25808 0 0 1 0 2 PDHX chr11:34969153 5'GT 34969153 Upstream 23bp
chr12 98941414 98941414 1 + G T LIHC 98941402 + 98941382 98941422 41 GCAGGCCGGCCATTAGAACTCAGTGATTTCAGGATGGAGGA GCAGGCCGGCCATTAGAACTCAGTGATTTCAGTATGGAGGA < 41bp 1 0.735511691770511 1 0.408891618251801 experiment 0.528976616458978 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMPO ENSG00000120802 CDS Human protein_coding chr12:98941402 chr12:98941414 nonsynonymous SNV 0.999 0 33 hm5C_associated_SNPs_25809 0 0 1 0 1 TMPO chr12:98941351 3'AG 98941351 Downstream 64bp
chr15 99491869 99491869 1 + C G LIHC 99491873 + 99491853 99491893 41 ACCAGGGCTTGTCCAACGAGCAAGTCCTTCGCTTCGTCATG ACCAGGGCTTGTCCAAGGAGCAAGTCCTTCGCTTCGTCATG < 41bp 1 0.220706506997425 1 0.089641809463501 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient IGF1R ENSG00000140443 CDS Human protein_coding chr15:99491873 chr15:99491869 nonsynonymous SNV 0.997 5 17 hm5C_associated_SNPs_25810 0 0 0 0 2 IGF1R chr15:99491803 3'AG 99491803 Downstream 67bp
chr15 99491869 99491869 1 + C G LIHC 99491873 + 99491853 99491893 41 ACCAGGGCTTGTCCAACGAGCAAGTCCTTCGCTTCGTCATG ACCAGGGCTTGTCCAAGGAGCAAGTCCTTCGCTTCGTCATG < 41bp 1 0.220706506997425 1 0.089641809463501 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient IGF1R ENSG00000140443 CDS Human protein_coding chr15:99491873 chr15:99491869 nonsynonymous SNV 0.997 5 17 hm5C_associated_SNPs_25810 0 0 0 0 2 IGF1R chr15:99491937 5'GT 99491937 Upstream 69bp
chr16 2732726 2732726 1 + G A LIHC 2732745 + 2732725 2732765 41 GGCAGACCCTGTGCCGGGACCCGAAATCCTTCCTGTACCGC GACAGACCCTGTGCCGGGACCCGAAATCCTTCCTGTACCGC < 41bp 1 0.481993528134943 1 0.316028654575348 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD5 ENSG00000167977 CDS Human protein_coding chr16:2732745 chr16:2732726 synonymous SNV . 0 2 hm5C_associated_SNPs_25811 0 0 1 0 1 KCTD5 chr16:2732801 5'GT 2732801 Upstream 76bp
chr16 67917569 67917569 1 + T C LIHC 67917568 + 67917548 67917588 41 ACCCTGCCCGCTCTCCCAGCCTGTGCTCCTTTCCCTCATCC ACCCTGCCCGCTCTCCCAGCCCGTGCTCCTTTCCCTCATCC < 41bp 1 0.147857486754482 1 0.255687654018402 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67917568 chr16:67917569 synonymous SNV . 0 22 hm5C_associated_SNPs_25812 0 0 1 0 2 EDC4 chr16:67917471 3'AG 67917471 Downstream 99bp
chr16 67917569 67917569 1 + T C LIHC 67917568 + 67917548 67917588 41 ACCCTGCCCGCTCTCCCAGCCTGTGCTCCTTTCCCTCATCC ACCCTGCCCGCTCTCCCAGCCCGTGCTCCTTTCCCTCATCC < 41bp 1 0.147857486754482 1 0.255687654018402 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67917568 chr16:67917569 synonymous SNV . 0 22 hm5C_associated_SNPs_25812 0 0 1 0 2 EDC4 chr16:67917634 5'GT 67917634 Upstream 66bp
chr20 37168585 37168585 1 + A G LIHC 37168578 + 37168558 37168598 41 TCTGTGTCTGGCTGACAGAGCACCCTGATATGCTTGATGAA TCTGTGTCTGGCTGACAGAGCACCCTGGTATGCTTGATGAA < 41bp 1 0.183495026601548 1 0.134437590837479 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37168578 chr20:37168585 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_25813 0 0 1 0 1 RALGAPB chr20:37168601 5'GT 37168601 Upstream 17bp
chr21 47864704 47864704 1 + A G LIHC 47864706 + 47864686 47864726 41 ATTCACCATTTAGAAGTGATCCAGCAAAGATTGGGAGGGGT ATTCACCATTTAGAAGTGGTCCAGCAAAGATTGGGAGGGGT < 41bp 1 0.0386767103236338 1 0.177810996770859 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47864706 chr21:47864704 nonsynonymous SNV 0.856 0 19 hm5C_associated_SNPs_25814 0 0 1 0 2 PCNT chr21:47864607 3'AG 47864607 Downstream 98bp
chr21 47864704 47864704 1 + A G LIHC 47864706 + 47864686 47864726 41 ATTCACCATTTAGAAGTGATCCAGCAAAGATTGGGAGGGGT ATTCACCATTTAGAAGTGGTCCAGCAAAGATTGGGAGGGGT < 41bp 1 0.0386767103236338 1 0.177810996770859 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47864706 chr21:47864704 nonsynonymous SNV 0.856 0 19 hm5C_associated_SNPs_25814 0 0 1 0 2 PCNT chr21:47864734 5'GT 47864734 Upstream 31bp
chr1 26136290 26136290 1 + G T LIHC 26136270 + 26136250 26136290 41 ATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCG ATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCT < 41bp 1 0.106253087332883 1 0.0402098894119263 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136270 chr1:26136290 nonsynonymous SNV 0.998 2 41 hm5C_associated_SNPs_25815 0 0 1 0 1 SELENON chr1:26136311 5'GT 26136311 Upstream 22bp
chr1 26136290 26136290 1 + G T LIHC 26136273 + 26136253 26136293 41 ATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCT ATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCTGCT < 41bp 1 0.106304948217803 1 0.0725802183151245 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136273 chr1:26136290 nonsynonymous SNV 0.998 2 38 hm5C_associated_SNPs_25816 0 0 1 0 1 SELENON chr1:26136311 5'GT 26136311 Upstream 22bp
chr1 26136290 26136290 1 + G T LIHC 26136274 + 26136254 26136294 41 TCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCTC TCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCTGCTC < 41bp 1 0.473245073869377 1 0.0473699569702148 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136274 chr1:26136290 nonsynonymous SNV 0.998 2 37 hm5C_associated_SNPs_25817 0 0 1 0 1 SELENON chr1:26136311 5'GT 26136311 Upstream 22bp
chr12 57627867 57627867 1 + T C LIHC 57627865 + 57627845 57627885 41 TTTATAGATGAAGGGGTCAACATTGGCTTAGAGGTGAAGAG TTTATAGATGAAGGGGTCAACACTGGCTTAGAGGTGAAGAG < 41bp 1 0.491602826173323 1 0.237368732690811 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57627865 chr12:57627867 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_25818 0 0 1 0 2 SHMT2 chr12:57627786 3'AG 57627786 Downstream 82bp
chr12 57627867 57627867 1 + T C LIHC 57627865 + 57627845 57627885 41 TTTATAGATGAAGGGGTCAACATTGGCTTAGAGGTGAAGAG TTTATAGATGAAGGGGTCAACACTGGCTTAGAGGTGAAGAG < 41bp 1 0.491602826173323 1 0.237368732690811 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57627865 chr12:57627867 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_25818 0 0 1 0 2 SHMT2 chr12:57627893 5'GT 57627893 Upstream 27bp
chr14 23237290 23237290 1 + G T LIHC 23237294 + 23237274 23237314 41 CGCTGAACTGGGGCTGGGGTCATACACCCCAGTGGGACTGA CGCTGAACTGGGGCTGTGGTCATACACCCCAGTGGGACTGA < 41bp 1 0.302132915787293 1 0.291755557060242 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXA1L ENSG00000155463 CDS Human protein_coding chr14:23237294 chr14:23237290 nonsynonymous SNV 0.956 4 17 hm5C_associated_SNPs_25819 0 0 1 0 1 OXA1L chr14:23237380 5'GT 23237380 Upstream 91bp
chr14 102805186 102805186 1 + C A LIHC 102805183 + 102805163 102805203 41 CATTAGGAATCACAGAATTCCTACGGAAGAAAGAAATACAC CATTAGGAATCACAGAATTCCTAAGGAAGAAAGAAATACAC < 41bp 1 0.403674798261729 1 0.611805379390717 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102805183 chr14:102805186 synonymous SNV . 0 24 hm5C_associated_SNPs_25820 0 0 1 1 1 ZNF839 chr14:102805153 3'AG 102805153 Downstream 34bp
chr17 8347657 8347657 1 + C A LIHC 8347653 + 8347633 8347673 41 AAACTGCTTATTGGAAGGAACTTTCCTTGAAGTATAAGCAA AAACTGCTTATTGGAAGGAACTTTACTTGAAGTATAAGCAA < 41bp 1 0.19124040006005 1 0.25588783621788 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDEL1 ENSG00000166579 CDS Human protein_coding chr17:8347653 chr17:8347657 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_25821 0 0 1 0 2 NDEL1 chr17:8347578 3'AG 8347578 Downstream 80bp
chr17 8347657 8347657 1 + C A LIHC 8347653 + 8347633 8347673 41 AAACTGCTTATTGGAAGGAACTTTCCTTGAAGTATAAGCAA AAACTGCTTATTGGAAGGAACTTTACTTGAAGTATAAGCAA < 41bp 1 0.19124040006005 1 0.25588783621788 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDEL1 ENSG00000166579 CDS Human protein_coding chr17:8347653 chr17:8347657 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_25821 0 0 1 0 2 NDEL1 chr17:8347675 5'GT 8347675 Upstream 19bp
chr19 14512305 14512305 1 + A G LIHC 14512320 + 14512300 14512340 41 CTTGAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA CTTGAGGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA < 41bp 1 0.271663079701775 1 0.0651932656764984 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14512320 chr19:14512305 synonymous SNV . 0 6 hm5C_associated_SNPs_25822 0 0 0 0 1 ADGRE5 chr19:14512375 5'GT 14512375 Upstream 71bp
chr22 32275652 32275652 1 + T C LIHC 32275660 + 32275640 32275680 41 TCCTGCCCTGGCTGCCTAGCCGGCCAGCCTCCTATGCAAGT TCCTGCCCTGGCCGCCTAGCCGGCCAGCCTCCTATGCAAGT < 41bp 1 0.523136677795804 1 0.345740377902985 experiment 0.953726644408391 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32275660 chr22:32275652 nonsynonymous SNV 0.989 4 13 hm5C_associated_SNPs_25823 0 0 0 0 1 DEPDC5 chr22:32275738 5'GT 32275738 Upstream 87bp
chr22 32275652 32275652 1 + T C LIHC 32275664 + 32275644 32275684 41 GCCCTGGCTGCCTAGCCGGCCAGCCTCCTATGCAAGTAGGC GCCCTGGCCGCCTAGCCGGCCAGCCTCCTATGCAAGTAGGC < 41bp 1 0.24344316354347 1 0.0761847198009491 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32275664 chr22:32275652 nonsynonymous SNV 0.989 4 9 hm5C_associated_SNPs_25824 0 0 0 0 1 DEPDC5 chr22:32275738 5'GT 32275738 Upstream 87bp
chr1 29068969 29068969 1 + T C LIHC 29068982 + 29068962 29069002 41 CAGTCCCTCCATTGGCTTCTCCTATTCTTTGGGTGAAGCTG CAGTCCCCCCATTGGCTTCTCCTATTCTTTGGGTGAAGCTG < 41bp 1 0.0423568517943199 1 0.0879116058349609 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29068982 chr1:29068969 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_25825 0 0 1 0 1 YTHDF2 chr1:29068915 3'AG 29068915 Downstream 55bp
chr2 74643206 74643206 1 - C A LIHC 74643210 - 74643190 74643230 41 CTCGAGGAGGGCGAGGACGTCGTAGGGGACATCTTGGCCGA CTCGAGGAGGGCGAGGACGTCGTATGGGACATCTTGGCCGA < 41bp 1 0.500284772343878 1 0.550827741622925 experiment 0.999430455312244 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C2orf81 ENSG00000159239 CDS Human protein_coding chr2:74643210 chr2:74643206 nonsynonymous SNV 0.814 3 25 hm5C_associated_SNPs_25826 0 0 0 0 1 C2orf81 chr2:74643138 5'GT 74643138 Upstream 69bp
chr4 52740446 52740446 1 + G T LIHC 52740449 + 52740429 52740469 41 TTTTGTAGGAAGTCTGCGGTCTTGCAGTTCTTCAGACTGCT TTTTGTAGGAAGTCTGCTGTCTTGCAGTTCTTCAGACTGCT < 41bp 1 0.319020701841142 1 0.0476633906364441 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DCUN1D4 ENSG00000109184 CDS Human protein_coding chr4:52740449 chr4:52740446 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_25827 0 0 1 0 1 DCUN1D4 chr4:52740437 3'AG 52740437 Downstream 10bp
chr6 35436190 35436190 1 + G T LIHC 35436189 + 35436169 35436209 41 AGACATGCTAGTCTCTTTTCCGGTTAGCGCGGCGTGAGAAG AGACATGCTAGTCTCTTTTCCTGTTAGCGCGGCGTGAGAAG < 41bp 1 0.221198592577637 1 0.173625379800797 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10A ENSG00000198755 UTR5 Human protein_coding chr6:35436189 chr6:35436190 . . 0 22 hm5C_associated_SNPs_25828 0 0 1 0 1 RPL10A chr6:35436216 5'GT 35436216 Upstream 27bp
chr6 35436190 35436190 1 + G T LIHC 35436198 + 35436178 35436218 41 AGTCTCTTTTCCGGTTAGCGCGGCGTGAGAAGCCATGAGGT AGTCTCTTTTCCTGTTAGCGCGGCGTGAGAAGCCATGAGGT < 41bp 1 0.65981147860538 1 0.863893330097198 experiment 0.68037704278924 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10A ENSG00000198755 UTR5 Human protein_coding chr6:35436198 chr6:35436190 . . 0 13 hm5C_associated_SNPs_25829 0 0 1 0 1 RPL10A chr6:35436216 5'GT 35436216 Upstream 27bp
chr6 35436190 35436190 1 + G T LIHC 35436201 + 35436181 35436221 41 CTCTTTTCCGGTTAGCGCGGCGTGAGAAGCCATGAGGTGAG CTCTTTTCCTGTTAGCGCGGCGTGAGAAGCCATGAGGTGAG < 41bp 1 0.357104620045457 1 0.466919541358948 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10A ENSG00000198755 UTR5 Human protein_coding chr6:35436201 chr6:35436190 . . 0 10 hm5C_associated_SNPs_25830 0 0 1 0 1 RPL10A chr6:35436216 5'GT 35436216 Upstream 27bp
chr7 27833974 27833974 1 + G T LIHC 27833973 + 27833953 27833993 41 TAATGTCTTCACAAAGAAAACGGGGAATCAGCAGAAAGTGA TAATGTCTTCACAAAGAAAACTGGGAATCAGCAGAAAGTGA < 41bp 1 0.677637102803692 1 0.191536754369736 experiment 0.644725794392616 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27833973 chr7:27833974 synonymous SNV . 0 22 hm5C_associated_SNPs_25831 0 0 1 0 2 TAX1BP1 chr7:27833942 3'AG 27833942 Downstream 33bp
chr7 27833974 27833974 1 + G T LIHC 27833973 + 27833953 27833993 41 TAATGTCTTCACAAAGAAAACGGGGAATCAGCAGAAAGTGA TAATGTCTTCACAAAGAAAACTGGGAATCAGCAGAAAGTGA < 41bp 1 0.677637102803692 1 0.191536754369736 experiment 0.644725794392616 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27833973 chr7:27833974 synonymous SNV . 0 22 hm5C_associated_SNPs_25831 0 0 1 0 2 TAX1BP1 chr7:27834065 5'GT 27834065 Upstream 92bp
chr8 61757431 61757431 1 + G T LIHC 61757430 + 61757410 61757450 41 ATTTGCTTTGCAGTTGGGGACGGTGGACAGACATTCTTTCC ATTTGCTTTGCAGTTGGGGACTGTGGACAGACATTCTTTCC < 41bp 1 0.150249501465071 1 0.17304664850235 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHD7 ENSG00000171316 CDS Human protein_coding chr8:61757430 chr8:61757431 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_25832 0 0 1 0 1 CHD7 chr8:61757423 3'AG 61757423 Downstream 9bp
chr10 112583335 112583335 1 + A G LIHC 112583337 + 112583317 112583357 41 TTCTTTGCCCTCTTGGGAACCAGAGGATGTGTTCAGTGAAC TTCTTTGCCCTCTTGGGAGCCAGAGGATGTGTTCAGTGAAC < 41bp 1 0.343986497271201 1 0.851433217525482 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control RBM20 ENSG00000203867 CDS Human protein_coding chr10:112583337 chr10:112583335 synonymous SNV . 0 19 hm5C_associated_SNPs_25833 0 0 1 0 2 RBM20 chr10:112583238 3'AG 112583238 Downstream 98bp
chr10 112583335 112583335 1 + A G LIHC 112583337 + 112583317 112583357 41 TTCTTTGCCCTCTTGGGAACCAGAGGATGTGTTCAGTGAAC TTCTTTGCCCTCTTGGGAGCCAGAGGATGTGTTCAGTGAAC < 41bp 1 0.343986497271201 1 0.851433217525482 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control RBM20 ENSG00000203867 CDS Human protein_coding chr10:112583337 chr10:112583335 synonymous SNV . 0 19 hm5C_associated_SNPs_25833 0 0 1 0 2 RBM20 chr10:112583372 5'GT 112583372 Upstream 38bp
chr14 23794468 23794468 1 + A G LIHC 23794459 + 23794439 23794479 41 CTCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCATG CTCCTTCTTTCTTCCAGGGGCCGGGCTAGGGCGACATCATG < 41bp 1 0.285137462449291 1 0.358551055192947 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23794459 chr14:23794468 synonymous SNV . 0 30 hm5C_associated_SNPs_25834 0 0 1 0 1 BCL2L2-PABPN1;PABPN1 chr14:23794456 3'AG 23794456 Downstream 13bp
chr14 23794468 23794468 1 + A G LIHC 23794460 + 23794440 23794480 41 TCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCATGG TCCTTCTTTCTTCCAGGGGCCGGGCTAGGGCGACATCATGG < 41bp 1 0.437587404265402 1 0.500105679035187 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23794460 chr14:23794468 synonymous SNV . 0 29 hm5C_associated_SNPs_25835 0 0 1 0 1 BCL2L2-PABPN1;PABPN1 chr14:23794456 3'AG 23794456 Downstream 13bp
chrX 18606124 18606124 1 + G T LIHC 18606141 + 18606121 18606161 41 TTGGGGAGCTTAGCGATGGACAGCCTTTATTTCCTGGAGAA TTGTGGAGCTTAGCGATGGACAGCCTTTATTTCCTGGAGAA < 41bp 1 0.41815924426587 1 0.328906059265137 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18606141 chrX:18606124 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_25836 0 0 0 0 1 CDKL5 chrX:18606074 3'AG 18606074 Downstream 51bp
chr1 45270441 45270441 1 + A G LIHC 45270421 + 45270401 45270441 41 CTGGGTATCCTGCGGTACTTCGCCTCCTACATGGAGCAGCA CTGGGTATCCTGCGGTACTTCGCCTCCTACATGGAGCAGCG < 41bp 1 0.680758686078841 1 0.4919193983078 experiment 0.638482627842317 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45270421 chr1:45270441 nonsynonymous SNV 0.999 0 41 hm5C_associated_SNPs_25840 0 0 0 0 1 PLK3 chr1:45270451 5'GT 45270451 Upstream 11bp
chr1 117641477 117641477 1 + G T LIHC 117641459 + 117641439 117641479 41 AGCTGTCTTCTAACAGGAATCCATCACTTGAAGATCAAGCT AGCTGTCTTCTAACAGGAATCCATCACTTGAAGATCAATCT < 41bp 1 0.0279117180613646 1 0.218562304973602 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117641459 chr1:117641477 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_25841 0 0 1 0 2 TTF2 chr1:117641455 3'AG 117641455 Downstream 23bp
chr1 117641477 117641477 1 + G T LIHC 117641459 + 117641439 117641479 41 AGCTGTCTTCTAACAGGAATCCATCACTTGAAGATCAAGCT AGCTGTCTTCTAACAGGAATCCATCACTTGAAGATCAATCT < 41bp 1 0.0279117180613646 1 0.218562304973602 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117641459 chr1:117641477 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_25841 0 0 1 0 2 TTF2 chr1:117641529 5'GT 117641529 Upstream 53bp
chr1 155154372 155154372 1 + C T LIHC 155154392 + 155154372 155154412 41 CGGCTGGCTATCAGCAAGGACCAGCGAGCAGTACGGAGTGT TGGCTGGCTATCAGCAAGGACCAGCGAGCAGTACGGAGTGT < 41bp 1 0.223011597510703 1 0.341706871986389 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155154392 chr1:155154372 nonsynonymous SNV 0.999 4 1 hm5C_associated_SNPs_25842 0 0 0 0 1 TRIM46 chr1:155154328 3'AG 155154328 Downstream 45bp
chr3 10123051 10123051 1 + G T LIHC 10123048 + 10123028 10123068 41 AGTGTTTAGCTGCTGAGAATCACGGTGTAGTTGATGGACCA AGTGTTTAGCTGCTGAGAATCACTGTGTAGTTGATGGACCA < 41bp 1 0.309834339295529 1 0.420271694660187 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10123048 chr3:10123051 nonsynonymous SNV 0.000 4 24 hm5C_associated_SNPs_25843 0 0 1 0 1 FANCD2 chr3:10123148 5'GT 10123148 Upstream 98bp
chr12 62783254 62783254 1 + G T LIHC 62783266 + 62783246 62783286 41 AGATCTTTGTACAGCATTGTCTGCTTTGTCAGGAATACCTG AGATCTTTTTACAGCATTGTCTGCTTTGTCAGGAATACCTG < 41bp 1 0.473290299536942 1 0.206179052591324 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP15 ENSG00000135655 CDS Human protein_coding chr12:62783266 chr12:62783254 nonsynonymous SNV 0.998 4 9 hm5C_associated_SNPs_25844 0 0 1 0 2 USP15 chr12:62783211 3'AG 62783211 Downstream 44bp
chr12 62783254 62783254 1 + G T LIHC 62783266 + 62783246 62783286 41 AGATCTTTGTACAGCATTGTCTGCTTTGTCAGGAATACCTG AGATCTTTTTACAGCATTGTCTGCTTTGTCAGGAATACCTG < 41bp 1 0.473290299536942 1 0.206179052591324 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP15 ENSG00000135655 CDS Human protein_coding chr12:62783266 chr12:62783254 nonsynonymous SNV 0.998 4 9 hm5C_associated_SNPs_25844 0 0 1 0 2 USP15 chr12:62783294 5'GT 62783294 Upstream 41bp
chr21 45534116 45534116 1 + T C LIHC 45534115 + 45534095 45534135 41 TCTGTGCTGCACCACTTCCACTTCAAGGGCTCTGTGCACAG TCTGTGCTGCACCACTTCCACCTCAAGGGCTCTGTGCACAG < 41bp 1 0.494295565393237 1 0.236419141292572 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45534115 chr21:45534116 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_25845 0 0 1 0 2 PWP2 chr21:45534060 3'AG 45534060 Downstream 57bp
chr21 45534116 45534116 1 + T C LIHC 45534115 + 45534095 45534135 41 TCTGTGCTGCACCACTTCCACTTCAAGGGCTCTGTGCACAG TCTGTGCTGCACCACTTCCACCTCAAGGGCTCTGTGCACAG < 41bp 1 0.494295565393237 1 0.236419141292572 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45534115 chr21:45534116 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_25845 0 0 1 0 2 PWP2 chr21:45534159 5'GT 45534159 Upstream 44bp
chr1 20224100 20224100 1 + A G LIHC 20224116 + 20224096 20224136 41 TACGACAGTGTTCGGAGGATCAATGACAACTCAGAGGCACC TACGGCAGTGTTCGGAGGATCAATGACAACTCAGAGGCACC < 41bp 1 0.276910552537348 1 0.238199561834335 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control OTUD3 ENSG00000169914 CDS Human protein_coding chr1:20224116 chr1:20224100 nonsynonymous SNV 0.994 2 5 hm5C_associated_SNPs_25846 0 0 1 0 2 OTUD3 chr1:20224033 3'AG 20224033 Downstream 68bp
chr1 20224100 20224100 1 + A G LIHC 20224116 + 20224096 20224136 41 TACGACAGTGTTCGGAGGATCAATGACAACTCAGAGGCACC TACGGCAGTGTTCGGAGGATCAATGACAACTCAGAGGCACC < 41bp 1 0.276910552537348 1 0.238199561834335 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control OTUD3 ENSG00000169914 CDS Human protein_coding chr1:20224116 chr1:20224100 nonsynonymous SNV 0.994 2 5 hm5C_associated_SNPs_25846 0 0 1 0 2 OTUD3 chr1:20224155 5'GT 20224155 Upstream 56bp
chr15 31221547 31221547 1 + A G LIHC 31221554 + 31221534 31221574 41 TGAGCAGGAAGGCAGAGTGGCTTCCCTTGTCAGCTGGGATC TGAGCAGGAAGGCGGAGTGGCTTCCCTTGTCAGCTGGGATC < 41bp 1 0.238819882395298 1 0.0612379610538483 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAN1 ENSG00000198690 CDS Human protein_coding chr15:31221554 chr15:31221547 nonsynonymous SNV 0.460 3 14 hm5C_associated_SNPs_25847 0 0 0 0 1 FAN1 chr15:31221600 5'GT 31221600 Upstream 54bp
chr1 12027091 12027091 1 + T C LIHC 12027087 + 12027067 12027107 41 CCCCATCTTCACGGAGGTGGCCTGTGATGAGCTGGTGGAGG CCCCATCTTCACGGAGGTGGCCTGCGATGAGCTGGTGGAGG < 41bp 1 0.151128847756659 1 0.212949156761169 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027087 chr1:12027091 synonymous SNV . 0 25 hm5C_associated_SNPs_25848 0 0 1 0 2 PLOD1 chr1:12027044 3'AG 12027044 Downstream 48bp
chr1 12027091 12027091 1 + T C LIHC 12027087 + 12027067 12027107 41 CCCCATCTTCACGGAGGTGGCCTGTGATGAGCTGGTGGAGG CCCCATCTTCACGGAGGTGGCCTGCGATGAGCTGGTGGAGG < 41bp 1 0.151128847756659 1 0.212949156761169 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027087 chr1:12027091 synonymous SNV . 0 25 hm5C_associated_SNPs_25848 0 0 1 0 2 PLOD1 chr1:12027148 5'GT 12027148 Upstream 58bp
chr1 28599950 28599950 1 + A G LIHC 28599931 + 28599911 28599951 41 ATGCAGCAGCTGCAGGAGAGCCTGCTGCGGGATGAGGGGAC ATGCAGCAGCTGCAGGAGAGCCTGCTGCGGGATGAGGGGGC < 41bp 1 0.155380565618442 1 0.349448561668396 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SESN2 ENSG00000130766 CDS Human protein_coding chr1:28599931 chr1:28599950 nonsynonymous SNV 0.439 0 40 hm5C_associated_SNPs_25849 0 0 1 0 2 SESN2 chr1:28599869 3'AG 28599869 Downstream 82bp
chr1 28599950 28599950 1 + A G LIHC 28599931 + 28599911 28599951 41 ATGCAGCAGCTGCAGGAGAGCCTGCTGCGGGATGAGGGGAC ATGCAGCAGCTGCAGGAGAGCCTGCTGCGGGATGAGGGGGC < 41bp 1 0.155380565618442 1 0.349448561668396 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SESN2 ENSG00000130766 CDS Human protein_coding chr1:28599931 chr1:28599950 nonsynonymous SNV 0.439 0 40 hm5C_associated_SNPs_25849 0 0 1 0 2 SESN2 chr1:28600019 5'GT 28600019 Upstream 70bp
chr1 222837351 222837351 1 + T C LIHC 222837353 + 222837333 222837373 41 TCTGCAGGTTAATATGGCTCCAAAAGGGCCCCCTCCTTTCC TCTGCAGGTTAATATGGCCCCAAAAGGGCCCCCTCCTTTCC < 41bp 1 0.574005377285674 1 0.190613895654678 experiment 0.851989245428653 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MIA3 ENSG00000154305 CDS Human protein_coding chr1:222837353 chr1:222837351 synonymous SNV . 0 19 hm5C_associated_SNPs_25850 0 0 1 0 1 MIA3 chr1:222837340 3'AG 222837340 Downstream 12bp
chr2 10264891 10264891 1 + C A LIHC 10264882 + 10264862 10264902 41 GAAGTTCAGATTACAGAAGCCCGCTGTTTCTATGGCTTCCA GAAGTTCAGATTACAGAAGCCCGCTGTTTATATGGCTTCCA < 41bp 1 0.210590197197428 1 0.0560451149940491 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RRM2 ENSG00000171848 CDS Human protein_coding chr2:10264882 chr2:10264891 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_25851 0 0 1 0 2 RRM2 chr2:10264844 3'AG 10264844 Downstream 48bp
chr2 10264891 10264891 1 + C A LIHC 10264882 + 10264862 10264902 41 GAAGTTCAGATTACAGAAGCCCGCTGTTTCTATGGCTTCCA GAAGTTCAGATTACAGAAGCCCGCTGTTTATATGGCTTCCA < 41bp 1 0.210590197197428 1 0.0560451149940491 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RRM2 ENSG00000171848 CDS Human protein_coding chr2:10264882 chr2:10264891 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_25851 0 0 1 0 2 RRM2 chr2:10264977 5'GT 10264977 Upstream 87bp
chr2 32362205 32362205 1 + C A LIHC 32362198 + 32362178 32362218 41 GTACAGTCTGCTGGAGATGACAGAGTACTTGTAATGGGTGC GTACAGTCTGCTGGAGATGACAGAGTAATTGTAATGGGTGC < 41bp 1 0.520328892973129 1 0.886602640151978 experiment 0.959342214053741 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32362198 chr2:32362205 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_25852 0 0 1 0 2 SPAST chr2:32362178 3'AG 32362178 Downstream 28bp
chr2 32362205 32362205 1 + C A LIHC 32362198 + 32362178 32362218 41 GTACAGTCTGCTGGAGATGACAGAGTACTTGTAATGGGTGC GTACAGTCTGCTGGAGATGACAGAGTAATTGTAATGGGTGC < 41bp 1 0.520328892973129 1 0.886602640151978 experiment 0.959342214053741 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32362198 chr2:32362205 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_25852 0 0 1 0 2 SPAST chr2:32362257 5'GT 32362257 Upstream 53bp
chr4 174239650 174239650 1 + A G LIHC 174239643 + 174239623 174239663 41 CCAGTGTTTGACAAAGGGAGCTGATGGATCAAAAGTTATGA CCAGTGTTTGACAAAGGGAGCTGATGGGTCAAAAGTTATGA < 41bp 1 0.201990598877895 1 0.0744695067405701 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT7 ENSG00000109586 CDS Human protein_coding chr4:174239643 chr4:174239650 synonymous SNV . 0 28 hm5C_associated_SNPs_25853 0 0 1 0 2 GALNT7 chr4:174239582 3'AG 174239582 Downstream 69bp
chr4 174239650 174239650 1 + A G LIHC 174239643 + 174239623 174239663 41 CCAGTGTTTGACAAAGGGAGCTGATGGATCAAAAGTTATGA CCAGTGTTTGACAAAGGGAGCTGATGGGTCAAAAGTTATGA < 41bp 1 0.201990598877895 1 0.0744695067405701 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT7 ENSG00000109586 CDS Human protein_coding chr4:174239643 chr4:174239650 synonymous SNV . 0 28 hm5C_associated_SNPs_25853 0 0 1 0 2 GALNT7 chr4:174239710 5'GT 174239710 Upstream 61bp
chr5 54640987 54640987 1 + C A LIHC 54640986 + 54640966 54641006 41 TCGAGATGCAGGTGATTTGGCCAAAGGAGACCAGAAAGGGC TCGAGATGCAGGTGATTTGGCAAAAGGAGACCAGAAAGGGC < 41bp 1 0.756651007960428 1 0.73628294467926 experiment 0.486697984079145 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54640986 chr5:54640987 synonymous SNV . 0 22 hm5C_associated_SNPs_25854 0 0 1 0 1 SKIV2L2 chr5:54641024 5'GT 54641024 Upstream 38bp
chr5 54640987 54640987 1 + C A LIHC 54640997 + 54640977 54641017 41 GTGATTTGGCCAAAGGAGACCAGAAAGGGCGGAAAGGAGGA GTGATTTGGCAAAAGGAGACCAGAAAGGGCGGAAAGGAGGA < 41bp 1 0.681962353202799 1 0.50161749124527 experiment 0.636075293594402 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54640997 chr5:54640987 synonymous SNV . 0 11 hm5C_associated_SNPs_25855 0 0 1 0 1 SKIV2L2 chr5:54641024 5'GT 54641024 Upstream 38bp
chr5 54640987 54640987 1 + C A LIHC 54641006 + 54640986 54641026 41 CCAAAGGAGACCAGAAAGGGCGGAAAGGAGGAACAAAAGGT CAAAAGGAGACCAGAAAGGGCGGAAAGGAGGAACAAAAGGT < 41bp 1 0.638367365689579 1 0.41109561920166 experiment 0.723265268620841 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54641006 chr5:54640987 synonymous SNV . 0 2 hm5C_associated_SNPs_25856 0 0 1 0 1 SKIV2L2 chr5:54641024 5'GT 54641024 Upstream 38bp
chr7 77227167 77227167 1 + A G LIHC 77227168 + 77227148 77227188 41 TCTTTATTTAGGAGGATGAACAAGCAAGAACAGACTACTTC TCTTTATTTAGGAGGATGAGCAAGCAAGAACAGACTACTTC < 41bp 1 0.348686040929661 1 0.244753360748291 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77227168 chr7:77227167 synonymous SNV . 0 20 hm5C_associated_SNPs_25857 0 0 1 0 2 PTPN12 chr7:77227159 3'AG 77227159 Downstream 9bp
chr7 77227167 77227167 1 + A G LIHC 77227168 + 77227148 77227188 41 TCTTTATTTAGGAGGATGAACAAGCAAGAACAGACTACTTC TCTTTATTTAGGAGGATGAGCAAGCAAGAACAGACTACTTC < 41bp 1 0.348686040929661 1 0.244753360748291 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77227168 chr7:77227167 synonymous SNV . 0 20 hm5C_associated_SNPs_25857 0 0 1 0 2 PTPN12 chr7:77227218 5'GT 77227218 Upstream 52bp
chr7 129064718 129064718 1 + C T LIHC 129064717 + 129064697 129064737 41 TTCACCTTTGATCACTAGGGCCGCCTGCTGAACCTTAGCTG TTCACCTTTGATCACTAGGGCTGCCTGCTGAACCTTAGCTG < 41bp 1 0.191276712677475 1 0.197599321603775 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064717 chr7:129064718 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_25858 0 0 0 0 2 AHCYL2 chr7:129064715 3'AG 129064715 Downstream 4bp
chr7 129064718 129064718 1 + C T LIHC 129064717 + 129064697 129064737 41 TTCACCTTTGATCACTAGGGCCGCCTGCTGAACCTTAGCTG TTCACCTTTGATCACTAGGGCTGCCTGCTGAACCTTAGCTG < 41bp 1 0.191276712677475 1 0.197599321603775 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064717 chr7:129064718 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_25858 0 0 0 0 2 AHCYL2 chr7:129064783 5'GT 129064783 Upstream 66bp
chr8 56922510 56922510 1 + C T LIHC 56922491 + 56922471 56922511 41 AACTAATGCCGACGTGATGACCGCCCTGTCCCAGGGCTACA AACTAATGCCGACGTGATGACCGCCCTGTCCCAGGGCTATA < 41bp 1 0.245664638968194 1 0.021828830242157 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56922491 chr8:56922510 synonymous SNV . 0 40 hm5C_associated_SNPs_25859 0 0 1 0 1 LYN chr8:56922467 3'AG 56922467 Downstream 44bp
chr9 131011001 131011001 1 + C A LIHC 131010994 + 131010974 131011014 41 TCAACAAGACCGTGAGGGACCTCATGCCCAAGACCATCATG TCAACAAGACCGTGAGGGACCTCATGCACAAGACCATCATG < 41bp 1 0.378632631085462 1 0.0961782932281494 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM1 ENSG00000106976 CDS Human protein_coding chr9:131010994 chr9:131011001 nonsynonymous SNV 0.995 4 28 hm5C_associated_SNPs_25860 0 0 1 2 1 DNM1 chr9:131011032 5'GT 131011032 Upstream 32bp
chr11 70260723 70260723 1 + G A LIHC 70260737 + 70260717 70260757 41 TTCGGAGGCAAGTTTGGTGTCCAGATGGACAGAGTTGATCA TTCGGAAGCAAGTTTGGTGTCCAGATGGACAGAGTTGATCA < 41bp 1 0.740428869089749 1 0.206141352653503 experiment 0.519142261820501 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70260737 chr11:70260723 nonsynonymous SNV 0.993 4 7 hm5C_associated_SNPs_25861 0 0 1 0 2 CTTN chr11:70260648 3'AG 70260648 Downstream 76bp
chr11 70260723 70260723 1 + G A LIHC 70260737 + 70260717 70260757 41 TTCGGAGGCAAGTTTGGTGTCCAGATGGACAGAGTTGATCA TTCGGAAGCAAGTTTGGTGTCCAGATGGACAGAGTTGATCA < 41bp 1 0.740428869089749 1 0.206141352653503 experiment 0.519142261820501 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70260737 chr11:70260723 nonsynonymous SNV 0.993 4 7 hm5C_associated_SNPs_25861 0 0 1 0 2 CTTN chr11:70260758 5'GT 70260758 Upstream 36bp
chr12 69128527 69128527 1 + A T LIHC 69128531 + 69128511 69128551 41 GTGGTTTAAGCATATGAATTCAGTTCCACAAAAACCTGCTT GTGGTTTAAGCATATGTATTCAGTTCCACAAAAACCTGCTT < 41bp 1 0.21705692204965 1 0.397006869316101 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69128531 chr12:69128527 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_25862 0 0 1 0 2 NUP107 chr12:69128488 3'AG 69128488 Downstream 40bp
chr12 69128527 69128527 1 + A T LIHC 69128531 + 69128511 69128551 41 GTGGTTTAAGCATATGAATTCAGTTCCACAAAAACCTGCTT GTGGTTTAAGCATATGTATTCAGTTCCACAAAAACCTGCTT < 41bp 1 0.21705692204965 1 0.397006869316101 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69128531 chr12:69128527 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_25862 0 0 1 0 2 NUP107 chr12:69128613 5'GT 69128613 Upstream 87bp
chr15 32920987 32920987 1 + T C LIHC 32920986 + 32920966 32921006 41 CAGAACACCTTCTATTACACCTCAAGAAGAAAGAATTGGTA CAGAACACCTTCTATTACACCCCAAGAAGAAAGAATTGGTA < 41bp 1 0.190850047487882 1 0.179572522640228 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP11A ENSG00000198826 CDS Human protein_coding chr15:32920986 chr15:32920987 synonymous SNV . 0 22 hm5C_associated_SNPs_25863 0 0 1 0 2 ARHGAP11A chr15:32920929 3'AG 32920929 Downstream 59bp
chr15 32920987 32920987 1 + T C LIHC 32920986 + 32920966 32921006 41 CAGAACACCTTCTATTACACCTCAAGAAGAAAGAATTGGTA CAGAACACCTTCTATTACACCCCAAGAAGAAAGAATTGGTA < 41bp 1 0.190850047487882 1 0.179572522640228 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP11A ENSG00000198826 CDS Human protein_coding chr15:32920986 chr15:32920987 synonymous SNV . 0 22 hm5C_associated_SNPs_25863 0 0 1 0 2 ARHGAP11A chr15:32921003 5'GT 32921003 Upstream 17bp
chr17 18057178 18057178 1 + G A LIHC 18057159 + 18057139 18057179 41 CTGCACCGCCTCATCAATCCCAACTTCTACGGCTATCAGGA CTGCACCGCCTCATCAATCCCAACTTCTACGGCTATCAGAA < 41bp 1 0.132925619405526 1 0.150025695562363 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MYO15A ENSG00000091536 CDS Human protein_coding chr17:18057159 chr17:18057178 nonsynonymous SNV 0.998 1 40 hm5C_associated_SNPs_25864 0 0 0 0 1 MYO15A chr17:18057210 5'GT 18057210 Upstream 33bp
chr17 67515549 67515549 1 + C A LIHC 67515562 + 67515542 67515582 41 CTGTCACCTTTTATGGCGCACTGTTTCGGGAGGTAGGTGAC CTGTCACATTTTATGGCGCACTGTTTCGGGAGGTAGGTGAC < 41bp 1 0.195467493567793 1 0.0263736248016357 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K6 ENSG00000108984 CDS Human protein_coding chr17:67515562 chr17:67515549 synonymous SNV . 0 8 hm5C_associated_SNPs_25867 0 0 1 0 2 MAP2K6 chr17:67515454 3'AG 67515454 Downstream 96bp
chr17 67515549 67515549 1 + C A LIHC 67515562 + 67515542 67515582 41 CTGTCACCTTTTATGGCGCACTGTTTCGGGAGGTAGGTGAC CTGTCACATTTTATGGCGCACTGTTTCGGGAGGTAGGTGAC < 41bp 1 0.195467493567793 1 0.0263736248016357 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K6 ENSG00000108984 CDS Human protein_coding chr17:67515562 chr17:67515549 synonymous SNV . 0 8 hm5C_associated_SNPs_25867 0 0 1 0 2 MAP2K6 chr17:67515573 5'GT 67515573 Upstream 25bp
chr18 48446834 48446834 1 + G T LIHC 48446838 + 48446818 48446858 41 GTTTTTAGATATGGCCGGAACACACTCATTCAGTTCGAAGA GTTTTTAGATATGGCCTGAACACACTCATTCAGTTCGAAGA < 41bp 1 0.327048180614978 1 0.209652632474899 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ME2 ENSG00000082212 CDS Human protein_coding chr18:48446838 chr18:48446834 nonsynonymous SNV 0.946 1 17 hm5C_associated_SNPs_25868 0 0 1 0 1 ME2 chr18:48446826 3'AG 48446826 Downstream 9bp
chr19 49469542 49469542 1 + C T LIHC 49469530 + 49469510 49469550 41 TTCTGAGCCATTTCTCCCTTCTATATAGAAGCCAGCTGAAG TTCTGAGCCATTTCTCCCTTCTATATAGAAGCTAGCTGAAG < 41bp 1 0.3218383843243 1 0.817295074462891 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469530 chr19:49469542 nonsynonymous SNV 0.797 2 33 hm5C_associated_SNPs_25869 0 0 1 0 1 FTL chr19:49469538 3'AG 49469538 Downstream 5bp
chrX 14929377 14929377 1 + T C LIHC 14929381 + 14929361 14929401 41 TCCTTTCAAGTATAGCTATCCACCACTAGTAGATGATGACT TCCTTTCAAGTATAGCCATCCACCACTAGTAGATGATGACT < 41bp 1 0.590381203498244 1 0.493669241666794 experiment 0.819237593003512 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD2 ENSG00000130150 CDS Human protein_coding chrX:14929381 chrX:14929377 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_25870 0 0 0 0 1 MOSPD2 chrX:14929359 3'AG 14929359 Downstream 19bp
chrX 47065756 47065756 1 + G A LIHC 47065738 + 47065718 47065758 41 GGCAATGTGCAGGTGGTGATCCCCTTCCTGACAGAGTCGTA GGCAATGTGCAGGTGGTGATCCCCTTCCTGACAGAGTCATA < 41bp 1 0.27777704339005 1 0.0701326727867126 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control UBA1 ENSG00000130985 CDS Human protein_coding chrX:47065738 chrX:47065756 synonymous SNV . 0 39 hm5C_associated_SNPs_25871 0 0 1 0 1 UBA1 chrX:47065843 5'GT 47065843 Upstream 88bp
chr16 90028226 90028226 1 + T C LIHC 90028230 + 90028210 90028250 41 TGGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAA TGGAACGACCTGGCTGCGATCCCTGCACGCGTTGTACACAA < 41bp 1 0.377456666872564 1 0.280555903911591 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028230 chr16:90028226 nonsynonymous SNV 0.913 1 17 hm5C_associated_SNPs_25872 0 0 1 0 2 DEF8 chr16:90028145 3'AG 90028145 Downstream 82bp
chr16 90028226 90028226 1 + T C LIHC 90028230 + 90028210 90028250 41 TGGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAA TGGAACGACCTGGCTGCGATCCCTGCACGCGTTGTACACAA < 41bp 1 0.377456666872564 1 0.280555903911591 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028230 chr16:90028226 nonsynonymous SNV 0.913 1 17 hm5C_associated_SNPs_25872 0 0 1 0 2 DEF8 chr16:90028272 5'GT 90028272 Upstream 47bp
chr16 90028226 90028226 1 + T C LIHC 90028231 + 90028211 90028251 41 GGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAAC GGAACGACCTGGCTGCGATCCCTGCACGCGTTGTACACAAC < 41bp 1 0.103183821568442 1 0.182238101959229 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028231 chr16:90028226 nonsynonymous SNV 0.913 1 16 hm5C_associated_SNPs_25873 0 0 1 0 2 DEF8 chr16:90028145 3'AG 90028145 Downstream 82bp
chr16 90028226 90028226 1 + T C LIHC 90028231 + 90028211 90028251 41 GGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAAC GGAACGACCTGGCTGCGATCCCTGCACGCGTTGTACACAAC < 41bp 1 0.103183821568442 1 0.182238101959229 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028231 chr16:90028226 nonsynonymous SNV 0.913 1 16 hm5C_associated_SNPs_25873 0 0 1 0 2 DEF8 chr16:90028272 5'GT 90028272 Upstream 47bp
chr3 128973580 128973580 1 + C A LIHC 128973582 + 128973562 128973602 41 GCGAGCCCTCTGCCAGATCACTGATGTGAGTCGTGCCGGTT GCGAGCCCTCTGCCAGATAACTGATGTGAGTCGTGCCGGTT < 41bp 1 0.702787341305667 1 0.116607636213303 experiment 0.594425317388666 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COPG1 ENSG00000181789 CDS Human protein_coding chr3:128973582 chr3:128973580 synonymous SNV . 0 19 hm5C_associated_SNPs_25875 0 0 1 0 2 COPG1 chr3:128973511 3'AG 128973511 Downstream 70bp
chr3 128973580 128973580 1 + C A LIHC 128973582 + 128973562 128973602 41 GCGAGCCCTCTGCCAGATCACTGATGTGAGTCGTGCCGGTT GCGAGCCCTCTGCCAGATAACTGATGTGAGTCGTGCCGGTT < 41bp 1 0.702787341305667 1 0.116607636213303 experiment 0.594425317388666 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COPG1 ENSG00000181789 CDS Human protein_coding chr3:128973582 chr3:128973580 synonymous SNV . 0 19 hm5C_associated_SNPs_25875 0 0 1 0 2 COPG1 chr3:128973586 5'GT 128973586 Upstream 7bp
chr12 101520844 101520844 1 + C A LIHC 101520850 + 101520830 101520870 41 CCACAACGAGTGGCCGTGACCATGTAGGTGAGAGGTGTGCT CCACAACGAGTGGCAGTGACCATGTAGGTGAGAGGTGTGCT < 41bp 1 0.441303250321183 1 0.302247583866119 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANO4 ENSG00000151572 CDS Human protein_coding chr12:101520850 chr12:101520844 nonsynonymous SNV 0.969 4 15 hm5C_associated_SNPs_25876 0 0 0 0 2 ANO4 chr12:101520852 5'GT 101520852 Upstream 9bp
chr12 101520844 101520844 1 + C A LIHC 101520850 + 101520830 101520870 41 CCACAACGAGTGGCCGTGACCATGTAGGTGAGAGGTGTGCT CCACAACGAGTGGCAGTGACCATGTAGGTGAGAGGTGTGCT < 41bp 1 0.441303250321183 1 0.302247583866119 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANO4 ENSG00000151572 CDS Human protein_coding chr12:101520850 chr12:101520844 nonsynonymous SNV 0.969 4 15 hm5C_associated_SNPs_25876 0 0 0 0 2 ANO4 chr12:101520856 5'GT 101520856 Upstream 13bp
chr19 11548763 11548763 1 + C T LIHC 11548761 + 11548741 11548781 41 GGCTATAAGCCCCTGTATATCCCCTCCAACCGGGTCAACGA GGCTATAAGCCCCTGTATATCCTCTCCAACCGGGTCAACGA < 41bp 1 0.14096403910502 1 0.0706776976585388 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11548761 chr19:11548763 nonsynonymous SNV 0.908 0 23 hm5C_associated_SNPs_25877 0 0 1 0 2 PRKCSH chr19:11548697 3'AG 11548697 Downstream 67bp
chr19 11548763 11548763 1 + C T LIHC 11548761 + 11548741 11548781 41 GGCTATAAGCCCCTGTATATCCCCTCCAACCGGGTCAACGA GGCTATAAGCCCCTGTATATCCTCTCCAACCGGGTCAACGA < 41bp 1 0.14096403910502 1 0.0706776976585388 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11548761 chr19:11548763 nonsynonymous SNV 0.908 0 23 hm5C_associated_SNPs_25877 0 0 1 0 2 PRKCSH chr19:11548792 5'GT 11548792 Upstream 30bp
chrX 153628235 153628235 1 + C A LIHC 153628229 + 153628209 153628249 41 CATATCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCAT CATATCCGGGTGCGGCTCCACCCCTTACACGTCATCCGCAT < 41bp 1 0.375309758013194 1 0.0475526750087738 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628229 chrX:153628235 nonsynonymous SNV 0.996 2 27 hm5C_associated_SNPs_25878 0 0 1 0 1 RPL10 chrX:153628282 5'GT 153628282 Upstream 48bp
chr3 184021755 184021755 1 + T C LIHC 184021744 + 184021724 184021764 41 GCTCTTTGTAGTCAGGAGCTCTTCTTGCCTGTGGCATAGTG GCTCTTTGTAGTCAGGAGCTCTTCTTGCCTGCGGCATAGTG < 41bp 1 0.134068586381265 1 0.0910423398017883 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184021744 chr3:184021755 synonymous SNV . 0 32 hm5C_associated_SNPs_25879 0 0 1 0 1 PSMD2 chr3:184021735 3'AG 184021735 Downstream 21bp
chr17 38318311 38318311 1 + T C LIHC 38318298 + 38318278 38318318 41 CAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATG CAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGACGATGATG < 41bp 1 0.211439469019321 1 0.0334231853485107 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318298 chr17:38318311 synonymous SNV . 0 34 hm5C_associated_SNPs_25880 0 0 1 0 2 CASC3 chr17:38318255 3'AG 38318255 Downstream 57bp
chr17 38318311 38318311 1 + T C LIHC 38318298 + 38318278 38318318 41 CAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATG CAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGACGATGATG < 41bp 1 0.211439469019321 1 0.0334231853485107 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318298 chr17:38318311 synonymous SNV . 0 34 hm5C_associated_SNPs_25880 0 0 1 0 2 CASC3 chr17:38318406 5'GT 38318406 Upstream 96bp
chr17 38318311 38318311 1 + T C LIHC 38318303 + 38318283 38318323 41 TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGAT TGGGTAAAAAGGGCCCTAAGCATTTGGACGATGATGAAGAT < 41bp 1 0.142045612911974 1 0.191481173038483 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318303 chr17:38318311 synonymous SNV . 0 29 hm5C_associated_SNPs_25881 0 0 1 0 2 CASC3 chr17:38318255 3'AG 38318255 Downstream 57bp
chr17 38318311 38318311 1 + T C LIHC 38318303 + 38318283 38318323 41 TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGAT TGGGTAAAAAGGGCCCTAAGCATTTGGACGATGATGAAGAT < 41bp 1 0.142045612911974 1 0.191481173038483 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318303 chr17:38318311 synonymous SNV . 0 29 hm5C_associated_SNPs_25881 0 0 1 0 2 CASC3 chr17:38318406 5'GT 38318406 Upstream 96bp
chr5 34925045 34925045 1 + T G LIHC 34925039 + 34925019 34925059 41 TCCAGGGAAGTTTTGGAGGACCAACTTTATATGAAAATCCT TCCAGGGAAGTTTTGGAGGACCAACTGTATATGAAAATCCT < 41bp 1 0.0716929534569446 1 0.0555792152881622 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BRIX1 ENSG00000113460 CDS Human protein_coding chr5:34925039 chr5:34925045 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_25882 0 0 1 0 2 BRIX1 chr5:34924952 3'AG 34924952 Downstream 94bp
chr5 34925045 34925045 1 + T G LIHC 34925039 + 34925019 34925059 41 TCCAGGGAAGTTTTGGAGGACCAACTTTATATGAAAATCCT TCCAGGGAAGTTTTGGAGGACCAACTGTATATGAAAATCCT < 41bp 1 0.0716929534569446 1 0.0555792152881622 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BRIX1 ENSG00000113460 CDS Human protein_coding chr5:34925039 chr5:34925045 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_25882 0 0 1 0 2 BRIX1 chr5:34925080 5'GT 34925080 Upstream 36bp
chr5 34925045 34925045 1 + T G LIHC 34925040 + 34925020 34925060 41 CCAGGGAAGTTTTGGAGGACCAACTTTATATGAAAATCCTC CCAGGGAAGTTTTGGAGGACCAACTGTATATGAAAATCCTC < 41bp 1 0.469779293892907 1 0.0786592960357666 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BRIX1 ENSG00000113460 CDS Human protein_coding chr5:34925040 chr5:34925045 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_25883 0 0 1 0 2 BRIX1 chr5:34924952 3'AG 34924952 Downstream 94bp
chr5 34925045 34925045 1 + T G LIHC 34925040 + 34925020 34925060 41 CCAGGGAAGTTTTGGAGGACCAACTTTATATGAAAATCCTC CCAGGGAAGTTTTGGAGGACCAACTGTATATGAAAATCCTC < 41bp 1 0.469779293892907 1 0.0786592960357666 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BRIX1 ENSG00000113460 CDS Human protein_coding chr5:34925040 chr5:34925045 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_25883 0 0 1 0 2 BRIX1 chr5:34925080 5'GT 34925080 Upstream 36bp
chr6 31378413 31378413 1 + C T LIHC 31378418 + 31378398 31378438 41 ATCTGGATGGTCAGCCCTTCCTGCGCTATGACAGGCAGAAA ATCTGGATGGTCAGCTCTTCCTGCGCTATGACAGGCAGAAA < 41bp 1 0.659215030522873 1 0.494583964347839 experiment 0.681569938954255 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MICA ENSG00000204520 CDS Human protein_coding chr6:31378418 chr6:31378413 nonsynonymous SNV 0.000 0 16 hm5C_associated_SNPs_25884 0 0 0 0 1 MICA chr6:31378320 3'AG 31378320 Downstream 94bp
chrX 135067806 135067806 1 + G A LIHC 135067817 + 135067797 135067837 41 GGCGGCGGAGAGGCTAGAGCCATGGACGAGGAGATCGTGTC GGCGGCGGAAAGGCTAGAGCCATGGACGAGGAGATCGTGTC < 41bp 1 0.682397581442349 1 0.760230183601379 experiment 0.635204837115302 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135067817 chrX:135067806 nonsynonymous SNV 0.025 0 10 hm5C_associated_SNPs_25885 0 0 0 0 1 SLC9A6 chrX:135067762 3'AG 135067762 Downstream 45bp
chr1 110210742 110210742 1 + C T LIHC 110210743 + 110210723 110210763 41 ACAGCAACCAGCACCATGCCCATGACACTGGGGTACTGGAA ACAGCAACCAGCACCATGCTCATGACACTGGGGTACTGGAA < 41bp 1 0.701509455848847 1 0.178081274032593 experiment 0.596981088302305 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GSTM2 ENSG00000213366 CDS Human protein_coding chr1:110210743 chr1:110210742 nonsynonymous SNV 0.042 1 20 hm5C_associated_SNPs_25888 0 0 1 2 1 GSTM2 chr1:110210773 5'GT 110210773 Upstream 32bp
chr3 42166969 42166969 1 + A G LIHC 42166968 + 42166948 42166988 41 TCATTAGCCTGCTGGAGGAGCAGCTGCCCCATTATAAGTTA TCATTAGCCTGCTGGAGGAGCGGCTGCCCCATTATAAGTTA < 41bp 1 0.371725810662917 1 0.322656035423279 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42166968 chr3:42166969 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_25889 0 0 1 0 1 TRAK1 chr3:42166912 3'AG 42166912 Downstream 58bp
chr5 10254912 10254912 1 + A G LIHC 10254899 + 10254879 10254919 41 TTGCCAAGCTGATGGTGGAACTGTCCAAGTCTCAGGATGAT TTGCCAAGCTGATGGTGGAACTGTCCAAGTCTCGGGATGAT < 41bp 1 0.15302101209304 1 0.0909264981746674 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10254899 chr5:10254912 nonsynonymous SNV 0.999 3 34 hm5C_associated_SNPs_25890 0 0 1 0 1 CCT5 chr5:10254950 5'GT 10254950 Upstream 39bp
chr5 10254912 10254912 1 + A G LIHC 10254903 + 10254883 10254923 41 CAAGCTGATGGTGGAACTGTCCAAGTCTCAGGATGATGAAA CAAGCTGATGGTGGAACTGTCCAAGTCTCGGGATGATGAAA < 41bp 1 0.235093750754405 1 0.194056212902069 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10254903 chr5:10254912 nonsynonymous SNV 0.999 3 30 hm5C_associated_SNPs_25891 0 0 1 0 1 CCT5 chr5:10254950 5'GT 10254950 Upstream 39bp
chr5 10254912 10254912 1 + A G LIHC 10254909 + 10254889 10254929 41 GATGGTGGAACTGTCCAAGTCTCAGGATGATGAAATTGGAG GATGGTGGAACTGTCCAAGTCTCGGGATGATGAAATTGGAG < 41bp 1 0.787644199149313 1 0.701202273368835 experiment 0.424711601701373 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10254909 chr5:10254912 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_25892 0 0 1 0 1 CCT5 chr5:10254950 5'GT 10254950 Upstream 39bp
chr6 160481652 160481652 1 + T C LIHC 160481661 + 160481641 160481681 41 AAATTCCTGCATCAAGATATCGACTCTGGGCAAGGGATCCG AAATTCCTGCACCAAGATATCGACTCTGGGCAAGGGATCCG < 41bp 1 0.195989018254295 1 0.260136365890503 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160481661 chr6:160481652 synonymous SNV . 0 12 hm5C_associated_SNPs_25893 0 0 1 0 2 IGF2R chr6:160481579 3'AG 160481579 Downstream 74bp
chr6 160481652 160481652 1 + T C LIHC 160481661 + 160481641 160481681 41 AAATTCCTGCATCAAGATATCGACTCTGGGCAAGGGATCCG AAATTCCTGCACCAAGATATCGACTCTGGGCAAGGGATCCG < 41bp 1 0.195989018254295 1 0.260136365890503 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160481661 chr6:160481652 synonymous SNV . 0 12 hm5C_associated_SNPs_25893 0 0 1 0 2 IGF2R chr6:160481749 5'GT 160481749 Upstream 98bp
chr7 98563383 98563383 1 + G A LIHC 98563380 + 98563360 98563400 41 ACGCGCCTGGCAGTGATGAGCATGGAGATGCGGAAGAACTT ACGCGCCTGGCAGTGATGAGCATAGAGATGCGGAAGAACTT < 41bp 1 0.0910630681335852 1 0.325062096118927 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98563380 chr7:98563383 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_25894 0 0 1 0 1 TRRAP chr7:98563319 3'AG 98563319 Downstream 65bp
chr12 88439522 88439522 1 + A G LIHC 88439525 + 88439505 88439545 41 TTAGAACAAACACTGGAACTCATAGGAACAAATATCAATGG TTAGAACAAACACTGGAGCTCATAGGAACAAATATCAATGG < 41bp 1 0.41986679631235 1 0.252210050821304 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C12orf29 ENSG00000133641 CDS Human protein_coding chr12:88439525 chr12:88439522 synonymous SNV . 0 18 hm5C_associated_SNPs_25897 0 0 1 1 1 C12orf29 chr12:88439556 5'GT 88439556 Upstream 35bp
chr12 105519803 105519803 1 + G T LIHC 105519783 + 105519763 105519803 41 TTCAATGTTTCCTGTCTAGGCCTGTATAGAACAACAATTTG TTCAATGTTTCCTGTCTAGGCCTGTATAGAACAACAATTTT < 41bp 1 0.105257882804693 1 0.0648104250431061 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519783 chr12:105519803 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_25898 0 0 1 0 1 WASHC4 chr12:105519782 3'AG 105519782 Downstream 22bp
chr12 105519803 105519803 1 + G T LIHC 105519794 + 105519774 105519814 41 CTGTCTAGGCCTGTATAGAACAACAATTTGATTCTCTCAAT CTGTCTAGGCCTGTATAGAACAACAATTTTATTCTCTCAAT < 41bp 1 0.699373423204141 1 0.163630723953247 experiment 0.601253153591718 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519794 chr12:105519803 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_25899 0 0 1 0 1 WASHC4 chr12:105519782 3'AG 105519782 Downstream 22bp
chr14 102469021 102469021 1 + G A LIHC 102469036 + 102469016 102469056 41 CAGTGGAAACCCAGCGGTTTCAGAGGTATGGCCTCCAGCCA CAGTGAAAACCCAGCGGTTTCAGAGGTATGGCCTCCAGCCA < 41bp 1 0.428116607688 1 0.789078831672668 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102469036 chr14:102469021 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_25900 0 0 1 0 1 DYNC1H1 chr14:102469040 5'GT 102469040 Upstream 20bp
chr14 105175662 105175662 1 + C T LIHC 105175682 + 105175662 105175702 41 CCAAGTTTGATGTGGAGGTTCTCAAACAACTCCTTAAGCTC TCAAGTTTGATGTGGAGGTTCTCAAACAACTCCTTAAGCTC < 41bp 1 0.509190713929781 1 0.79532265663147 experiment 0.981618572140438 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105175682 chr14:105175662 nonsynonymous SNV 0.771 0 1 hm5C_associated_SNPs_25901 0 0 1 0 2 INF2 chr14:105175618 3'AG 105175618 Downstream 45bp
chr14 105175662 105175662 1 + C T LIHC 105175682 + 105175662 105175702 41 CCAAGTTTGATGTGGAGGTTCTCAAACAACTCCTTAAGCTC TCAAGTTTGATGTGGAGGTTCTCAAACAACTCCTTAAGCTC < 41bp 1 0.509190713929781 1 0.79532265663147 experiment 0.981618572140438 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105175682 chr14:105175662 nonsynonymous SNV 0.771 0 1 hm5C_associated_SNPs_25901 0 0 1 0 2 INF2 chr14:105175720 5'GT 105175720 Upstream 59bp
chr17 40646474 40646474 1 + C A LIHC 40646461 + 40646441 40646481 41 TGGATGGTACTGAGGGAGAGCCGGATCCTTTCCCAGAAGAA TGGATGGTACTGAGGGAGAGCCGGATCCTTTCCAAGAAGAA < 41bp 1 0.40937810705251 1 0.461233615875244 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40646461 chr17:40646474 nonsynonymous SNV 0.997 2 34 hm5C_associated_SNPs_25902 0 0 1 0 1 ATP6V0A1 chr17:40646491 5'GT 40646491 Upstream 18bp
chr17 79652703 79652703 1 + C A LIHC 79652714 + 79652694 79652734 41 GACCTGATCCGCCAAGGGGACACACAGTGAGTTAGCGGGGC GACCTGATCAGCCAAGGGGACACACAGTGAGTTAGCGGGGC < 41bp 1 0.19339666464321 1 0.172797322273254 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79652714 chr17:79652703 nonsynonymous SNV 0.993 4 10 hm5C_associated_SNPs_25903 0 0 1 0 2 HGS chr17:79652635 3'AG 79652635 Downstream 69bp
chr17 79652703 79652703 1 + C A LIHC 79652714 + 79652694 79652734 41 GACCTGATCCGCCAAGGGGACACACAGTGAGTTAGCGGGGC GACCTGATCAGCCAAGGGGACACACAGTGAGTTAGCGGGGC < 41bp 1 0.19339666464321 1 0.172797322273254 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79652714 chr17:79652703 nonsynonymous SNV 0.993 4 10 hm5C_associated_SNPs_25903 0 0 1 0 2 HGS chr17:79652719 5'GT 79652719 Upstream 17bp
chr22 44368128 44368128 1 + T C LIHC 44368123 + 44368103 44368143 41 TTTTTTTATTTAGGTGATGACGCACTTCCAAATGGGTTAGA TTTTTTTATTTAGGTGATGACGCACCTCCAAATGGGTTAGA < 41bp 1 0.132493782428269 1 0.115612179040909 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44368123 chr22:44368128 nonsynonymous SNV 0.898 1 26 hm5C_associated_SNPs_25904 0 0 1 0 2 SAMM50 chr22:44368116 3'AG 44368116 Downstream 13bp
chr22 44368128 44368128 1 + T C LIHC 44368123 + 44368103 44368143 41 TTTTTTTATTTAGGTGATGACGCACTTCCAAATGGGTTAGA TTTTTTTATTTAGGTGATGACGCACCTCCAAATGGGTTAGA < 41bp 1 0.132493782428269 1 0.115612179040909 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44368123 chr22:44368128 nonsynonymous SNV 0.898 1 26 hm5C_associated_SNPs_25904 0 0 1 0 2 SAMM50 chr22:44368222 5'GT 44368222 Upstream 95bp
chrX 41200777 41200777 1 + A G LIHC 41200758 + 41200738 41200778 41 TTTCTACGATAAAGACAGTTCAGGGTGGAGTTCTAGCAAAG TTTCTACGATAAAGACAGTTCAGGGTGGAGTTCTAGCAAGG < 41bp 1 0.718967646035244 1 0.675841927528381 experiment 0.562064707929512 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41200758 chrX:41200777 synonymous SNV . 0 40 hm5C_associated_SNPs_25905 0 0 1 0 2 DDX3X chrX:41200737 3'AG 41200737 Downstream 41bp
chrX 41200777 41200777 1 + A G LIHC 41200758 + 41200738 41200778 41 TTTCTACGATAAAGACAGTTCAGGGTGGAGTTCTAGCAAAG TTTCTACGATAAAGACAGTTCAGGGTGGAGTTCTAGCAAGG < 41bp 1 0.718967646035244 1 0.675841927528381 experiment 0.562064707929512 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41200758 chrX:41200777 synonymous SNV . 0 40 hm5C_associated_SNPs_25905 0 0 1 0 2 DDX3X chrX:41200869 5'GT 41200869 Upstream 93bp
chrX 41200777 41200777 1 + A G LIHC 41200770 + 41200750 41200790 41 AGACAGTTCAGGGTGGAGTTCTAGCAAAGATAAGGATGCGT AGACAGTTCAGGGTGGAGTTCTAGCAAGGATAAGGATGCGT < 41bp 1 0.341481147113755 1 0.0903386771678925 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41200770 chrX:41200777 synonymous SNV . 0 28 hm5C_associated_SNPs_25906 0 0 1 0 2 DDX3X chrX:41200737 3'AG 41200737 Downstream 41bp
chrX 41200777 41200777 1 + A G LIHC 41200770 + 41200750 41200790 41 AGACAGTTCAGGGTGGAGTTCTAGCAAAGATAAGGATGCGT AGACAGTTCAGGGTGGAGTTCTAGCAAGGATAAGGATGCGT < 41bp 1 0.341481147113755 1 0.0903386771678925 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41200770 chrX:41200777 synonymous SNV . 0 28 hm5C_associated_SNPs_25906 0 0 1 0 2 DDX3X chrX:41200869 5'GT 41200869 Upstream 93bp
chrX 64956691 64956691 1 + A G LIHC 64956685 + 64956665 64956705 41 TGGAAAATGAGAAGAAGAAGCGTGAAATGGCAGAGAAGGAG TGGAAAATGAGAAGAAGAAGCGTGAAGTGGCAGAGAAGGAG < 41bp 1 0.541290771590733 1 0.469016015529633 experiment 0.917418456818533 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956685 chrX:64956691 nonsynonymous SNV 0.986 0 27 hm5C_associated_SNPs_25907 0 0 1 0 2 MSN chrX:64956657 3'AG 64956657 Downstream 35bp
chrX 64956691 64956691 1 + A G LIHC 64956685 + 64956665 64956705 41 TGGAAAATGAGAAGAAGAAGCGTGAAATGGCAGAGAAGGAG TGGAAAATGAGAAGAAGAAGCGTGAAGTGGCAGAGAAGGAG < 41bp 1 0.541290771590733 1 0.469016015529633 experiment 0.917418456818533 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956685 chrX:64956691 nonsynonymous SNV 0.986 0 27 hm5C_associated_SNPs_25907 0 0 1 0 2 MSN chrX:64956787 5'GT 64956787 Upstream 97bp
chrX 64956691 64956691 1 + A G LIHC 64956695 + 64956675 64956715 41 GAAGAAGAAGCGTGAAATGGCAGAGAAGGAGAAAGAGAAGA GAAGAAGAAGCGTGAAGTGGCAGAGAAGGAGAAAGAGAAGA < 41bp 1 0.483975041360109 1 0.414414077997208 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956695 chrX:64956691 nonsynonymous SNV 0.986 0 17 hm5C_associated_SNPs_25908 0 0 1 0 2 MSN chrX:64956657 3'AG 64956657 Downstream 35bp
chrX 64956691 64956691 1 + A G LIHC 64956695 + 64956675 64956715 41 GAAGAAGAAGCGTGAAATGGCAGAGAAGGAGAAAGAGAAGA GAAGAAGAAGCGTGAAGTGGCAGAGAAGGAGAAAGAGAAGA < 41bp 1 0.483975041360109 1 0.414414077997208 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956695 chrX:64956691 nonsynonymous SNV 0.986 0 17 hm5C_associated_SNPs_25908 0 0 1 0 2 MSN chrX:64956787 5'GT 64956787 Upstream 97bp
chr1 9776674 9776674 1 + C A LIHC 9776665 + 9776645 9776685 41 CTGTATGGCAGCTACCCGCTCTGCCAGTTCCAGGTGAGGCC CTGTATGGCAGCTACCCGCTCTGCCAGTTACAGGTGAGGCC < 41bp 1 0.325931789279865 1 0.192120343446732 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9776665 chr1:9776674 nonsynonymous SNV 0.998 4 30 hm5C_associated_SNPs_25909 0 0 1 0 1 PIK3CD chr1:9776677 5'GT 9776677 Upstream 4bp
chr1 36358852 36358852 1 + T A LIHC 36358839 + 36358819 36358859 41 CTGTTCCCTTGGAGTCTGTGCAAGCCCTGGATGTGGCCATG CTGTTCCCTTGGAGTCTGTGCAAGCCCTGGATGAGGCCATG < 41bp 1 0.279963459609526 1 0.486344456672668 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGO1 ENSG00000092847 CDS Human protein_coding chr1:36358839 chr1:36358852 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_25910 0 0 1 0 1 AGO1 chr1:36358879 5'GT 36358879 Upstream 28bp
chr1 41475858 41475858 1 + A G LIHC 41475860 + 41475840 41475880 41 TATAGTGACAGGAGTGGAAGCAGCTCCCCTGACTCTGAAAT TATAGTGACAGGAGTGGAGGCAGCTCCCCTGACTCTGAAAT < 41bp 1 0.28088600128454 1 0.778949379920959 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CTPS1 ENSG00000171793 CDS Human protein_coding chr1:41475860 chr1:41475858 nonsynonymous SNV 0.998 1 19 hm5C_associated_SNPs_25911 0 0 1 0 1 CTPS1 chr1:41475833 3'AG 41475833 Downstream 26bp
chr1 45218873 45218873 1 + A G LIHC 45218862 + 45218842 45218882 41 ATACCATTGAGGATGGTCAGCGAGGAGATGGAAGAGCAAGT ATACCATTGAGGATGGTCAGCGAGGAGATGGGAGAGCAAGT < 41bp 1 0.587934426465108 1 0.473000258207321 experiment 0.824131147069784 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF2C ENSG00000142945 CDS Human protein_coding chr1:45218862 chr1:45218873 nonsynonymous SNV 0.959 0 32 hm5C_associated_SNPs_25912 0 0 1 0 2 KIF2C chr1:45218804 3'AG 45218804 Downstream 70bp
chr1 45218873 45218873 1 + A G LIHC 45218862 + 45218842 45218882 41 ATACCATTGAGGATGGTCAGCGAGGAGATGGAAGAGCAAGT ATACCATTGAGGATGGTCAGCGAGGAGATGGGAGAGCAAGT < 41bp 1 0.587934426465108 1 0.473000258207321 experiment 0.824131147069784 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF2C ENSG00000142945 CDS Human protein_coding chr1:45218862 chr1:45218873 nonsynonymous SNV 0.959 0 32 hm5C_associated_SNPs_25912 0 0 1 0 2 KIF2C chr1:45218926 5'GT 45218926 Upstream 54bp
chr1 109325274 109325274 1 + A G LIHC 109325284 + 109325264 109325304 41 TTGACAGGGAAATTCCCAAGCTTATGAAAGAAATTTCATCA TTGACAGGGAGATTCCCAAGCTTATGAAAGAAATTTCATCA < 41bp 1 0.2177090967753 1 0.0682648420333862 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109325284 chr1:109325274 synonymous SNV . 0 11 hm5C_associated_SNPs_25913 0 0 1 0 2 STXBP3 chr1:109325271 3'AG 109325271 Downstream 4bp
chr1 109325274 109325274 1 + A G LIHC 109325284 + 109325264 109325304 41 TTGACAGGGAAATTCCCAAGCTTATGAAAGAAATTTCATCA TTGACAGGGAGATTCCCAAGCTTATGAAAGAAATTTCATCA < 41bp 1 0.2177090967753 1 0.0682648420333862 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109325284 chr1:109325274 synonymous SNV . 0 11 hm5C_associated_SNPs_25913 0 0 1 0 2 STXBP3 chr1:109325328 5'GT 109325328 Upstream 55bp
chr3 49713561 49713561 1 + A G LIHC 49713571 + 49713551 49713591 41 AAGCGCCCCAAGGCCGAGTCCTTCTTTCAGACCAAAGCCTT AAGCGCCCCAGGGCCGAGTCCTTCTTTCAGACCAAAGCCTT < 41bp 1 0.217905834986725 1 0.104798704385757 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49713571 chr3:49713561 nonsynonymous SNV 0.985 3 11 hm5C_associated_SNPs_25915 0 0 1 0 2 APEH chr3:49713489 3'AG 49713489 Downstream 73bp
chr3 49713561 49713561 1 + A G LIHC 49713571 + 49713551 49713591 41 AAGCGCCCCAAGGCCGAGTCCTTCTTTCAGACCAAAGCCTT AAGCGCCCCAGGGCCGAGTCCTTCTTTCAGACCAAAGCCTT < 41bp 1 0.217905834986725 1 0.104798704385757 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49713571 chr3:49713561 nonsynonymous SNV 0.985 3 11 hm5C_associated_SNPs_25915 0 0 1 0 2 APEH chr3:49713652 5'GT 49713652 Upstream 92bp
chr3 128973914 128973914 1 + T C LIHC 128973917 + 128973897 128973937 41 AGCTCTGCCCTCGTGTCTTCCTTGGTGTGTAGTTGCTGCTG AGCTCTGCCCTCGTGTCCTCCTTGGTGTGTAGTTGCTGCTG < 41bp 1 0.592855077115595 1 0.730689704418182 experiment 0.814289845768809 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COPG1 ENSG00000181789 CDS Human protein_coding chr3:128973917 chr3:128973914 synonymous SNV . 0 18 hm5C_associated_SNPs_25916 0 0 1 0 2 COPG1 chr3:128973828 3'AG 128973828 Downstream 87bp
chr3 128973914 128973914 1 + T C LIHC 128973917 + 128973897 128973937 41 AGCTCTGCCCTCGTGTCTTCCTTGGTGTGTAGTTGCTGCTG AGCTCTGCCCTCGTGTCCTCCTTGGTGTGTAGTTGCTGCTG < 41bp 1 0.592855077115595 1 0.730689704418182 experiment 0.814289845768809 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COPG1 ENSG00000181789 CDS Human protein_coding chr3:128973917 chr3:128973914 synonymous SNV . 0 18 hm5C_associated_SNPs_25916 0 0 1 0 2 COPG1 chr3:128973920 5'GT 128973920 Upstream 7bp
chr4 123145715 123145715 1 + G T LIHC 123145724 + 123145704 123145744 41 GGTCTCCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG GGTCTCCAGCTTAGAGCACACGCTATGTTCTCAGCAGAAGG < 41bp 1 0.360523167038207 1 0.258279144763947 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123145724 chr4:123145715 synonymous SNV . 0 12 hm5C_associated_SNPs_25917 0 0 1 0 2 KIAA1109 chr4:123145653 3'AG 123145653 Downstream 63bp
chr4 123145715 123145715 1 + G T LIHC 123145724 + 123145704 123145744 41 GGTCTCCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG GGTCTCCAGCTTAGAGCACACGCTATGTTCTCAGCAGAAGG < 41bp 1 0.360523167038207 1 0.258279144763947 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123145724 chr4:123145715 synonymous SNV . 0 12 hm5C_associated_SNPs_25917 0 0 1 0 2 KIAA1109 chr4:123145656 3'AG 123145656 Downstream 60bp
chr4 183601728 183601728 1 + C A LIHC 183601733 + 183601713 183601753 41 TGTAGTGGCAACGGGCAGTACTCCAAGGGCCGCTGCCTGTG TGTAGTGGCAACGGGAAGTACTCCAAGGGCCGCTGCCTGTG < 41bp 1 0.799312431320405 1 0.986724078655243 experiment 0.40137513735919 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|28418038;GSE74771;RNA-BisSeq;293T;Control TENM3 ENSG00000218336 CDS Human protein_coding chr4:183601733 chr4:183601728 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_25918 0 0 1 0 1 TENM3 chr4:183601696 3'AG 183601696 Downstream 33bp
chr10 75529157 75529157 1 + A G LIHC 75529138 + 75529118 75529158 41 ACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCATAAT ACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCATAGT < 41bp 1 0.403078746296862 1 0.243377774953842 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529138 chr10:75529157 nonsynonymous SNV 0.996 4 40 hm5C_associated_SNPs_25920 0 0 1 0 2 SEC24C chr10:75529105 3'AG 75529105 Downstream 53bp
chr10 75529157 75529157 1 + A G LIHC 75529138 + 75529118 75529158 41 ACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCATAAT ACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCATAGT < 41bp 1 0.403078746296862 1 0.243377774953842 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529138 chr10:75529157 nonsynonymous SNV 0.996 4 40 hm5C_associated_SNPs_25920 0 0 1 0 2 SEC24C chr10:75529243 5'GT 75529243 Upstream 87bp
chr10 75529157 75529157 1 + A G LIHC 75529146 + 75529126 75529166 41 TGTGCAGGGCAGCGTCGGCTCCGCATCCATAATCTGGCCCT TGTGCAGGGCAGCGTCGGCTCCGCATCCATAGTCTGGCCCT < 41bp 1 0.776291981736156 1 0.0974757671356201 experiment 0.447416036527688 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529146 chr10:75529157 nonsynonymous SNV 0.996 4 32 hm5C_associated_SNPs_25921 0 0 1 0 2 SEC24C chr10:75529105 3'AG 75529105 Downstream 53bp
chr10 75529157 75529157 1 + A G LIHC 75529146 + 75529126 75529166 41 TGTGCAGGGCAGCGTCGGCTCCGCATCCATAATCTGGCCCT TGTGCAGGGCAGCGTCGGCTCCGCATCCATAGTCTGGCCCT < 41bp 1 0.776291981736156 1 0.0974757671356201 experiment 0.447416036527688 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529146 chr10:75529157 nonsynonymous SNV 0.996 4 32 hm5C_associated_SNPs_25921 0 0 1 0 2 SEC24C chr10:75529243 5'GT 75529243 Upstream 87bp
chr10 102716232 102716232 1 + G T LIHC 102716213 + 102716193 102716233 41 ATTTGTTTTGCACAGAAACACTTTGTGCTACTCTGTGGGGC ATTTGTTTTGCACAGAAACACTTTGTGCTACTCTGTGGGTC < 41bp 1 0.139430021428751 1 0.0764674246311188 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLF2 ENSG00000119906 CDS Human protein_coding chr10:102716213 chr10:102716232 nonsynonymous SNV 0.998 0 40 hm5C_associated_SNPs_25922 0 0 1 0 2 SLF2 chr10:102716208 3'AG 102716208 Downstream 25bp
chr10 102716232 102716232 1 + G T LIHC 102716213 + 102716193 102716233 41 ATTTGTTTTGCACAGAAACACTTTGTGCTACTCTGTGGGGC ATTTGTTTTGCACAGAAACACTTTGTGCTACTCTGTGGGTC < 41bp 1 0.139430021428751 1 0.0764674246311188 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLF2 ENSG00000119906 CDS Human protein_coding chr10:102716213 chr10:102716232 nonsynonymous SNV 0.998 0 40 hm5C_associated_SNPs_25922 0 0 1 0 2 SLF2 chr10:102716294 5'GT 102716294 Upstream 63bp
chr11 46403627 46403627 1 + T C LIHC 46403637 + 46403617 46403657 41 CGAGGCTTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCT CGAGGCTTCCCCCTCCTCACCCTCCTCGCCCTGCTGGCGCT < 41bp 1 0.0514727734245728 1 0.0521614849567413 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403637 chr11:46403627 nonsynonymous SNV 0.887 2 11 hm5C_associated_SNPs_25923 0 0 1 0 2 MDK chr11:46403607 3'AG 46403607 Downstream 21bp
chr11 46403627 46403627 1 + T C LIHC 46403637 + 46403617 46403657 41 CGAGGCTTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCT CGAGGCTTCCCCCTCCTCACCCTCCTCGCCCTGCTGGCGCT < 41bp 1 0.0514727734245728 1 0.0521614849567413 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403637 chr11:46403627 nonsynonymous SNV 0.887 2 11 hm5C_associated_SNPs_25923 0 0 1 0 2 MDK chr11:46403683 5'GT 46403683 Upstream 57bp
chr11 46403627 46403627 1 + T C LIHC 46403638 + 46403618 46403658 41 GAGGCTTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCTC GAGGCTTCCCCCTCCTCACCCTCCTCGCCCTGCTGGCGCTC < 41bp 1 0.464849856435536 1 0.191708087921143 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403638 chr11:46403627 nonsynonymous SNV 0.887 2 10 hm5C_associated_SNPs_25924 0 0 1 0 2 MDK chr11:46403607 3'AG 46403607 Downstream 21bp
chr11 46403627 46403627 1 + T C LIHC 46403638 + 46403618 46403658 41 GAGGCTTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCTC GAGGCTTCCCCCTCCTCACCCTCCTCGCCCTGCTGGCGCTC < 41bp 1 0.464849856435536 1 0.191708087921143 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403638 chr11:46403627 nonsynonymous SNV 0.887 2 10 hm5C_associated_SNPs_25924 0 0 1 0 2 MDK chr11:46403683 5'GT 46403683 Upstream 57bp
chr11 46403627 46403627 1 + T C LIHC 46403643 + 46403623 46403663 41 TTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCTCACCTC TTCCCCCTCCTCACCCTCCTCGCCCTGCTGGCGCTCACCTC < 41bp 1 0.57118240685141 1 0.529366910457611 experiment 0.85763518629718 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403643 chr11:46403627 nonsynonymous SNV 0.887 2 5 hm5C_associated_SNPs_25925 0 0 1 0 2 MDK chr11:46403607 3'AG 46403607 Downstream 21bp
chr11 46403627 46403627 1 + T C LIHC 46403643 + 46403623 46403663 41 TTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCTCACCTC TTCCCCCTCCTCACCCTCCTCGCCCTGCTGGCGCTCACCTC < 41bp 1 0.57118240685141 1 0.529366910457611 experiment 0.85763518629718 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403643 chr11:46403627 nonsynonymous SNV 0.887 2 5 hm5C_associated_SNPs_25925 0 0 1 0 2 MDK chr11:46403683 5'GT 46403683 Upstream 57bp
chr12 53412615 53412615 1 + T C LIHC 53412624 + 53412604 53412644 41 CGATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCA CGATGACGATGCGTATAGGGCGCCTCCAATTGACCGTTCCA < 41bp 1 0.402143771188876 1 0.097471684217453 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412624 chr12:53412615 nonsynonymous SNV 0.938 1 12 hm5C_associated_SNPs_25926 0 0 1 0 1 EIF4B chr12:53412582 3'AG 53412582 Downstream 34bp
chr12 53412615 53412615 1 + T C LIHC 53412626 + 53412606 53412646 41 ATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATC ATGACGATGCGTATAGGGCGCCTCCAATTGACCGTTCCATC < 41bp 1 0.0520576527360308 1 0.078999251127243 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412626 chr12:53412615 nonsynonymous SNV 0.938 1 10 hm5C_associated_SNPs_25927 0 0 1 0 1 EIF4B chr12:53412582 3'AG 53412582 Downstream 34bp
chr13 61034596 61034596 1 + C T LIHC 61034613 + 61034593 61034633 41 CACCAAGGATGCTGCGATTACAGATGACTGATGGTCATATA CACTAAGGATGCTGCGATTACAGATGACTGATGGTCATATA < 41bp 1 0.682926527000704 1 0.663956642150879 experiment 0.634146945998592 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61034613 chr13:61034596 nonsynonymous SNV 0.998 4 4 hm5C_associated_SNPs_25928 0 0 1 0 2 TDRD3 chr13:61034514 3'AG 61034514 Downstream 83bp
chr13 61034596 61034596 1 + C T LIHC 61034613 + 61034593 61034633 41 CACCAAGGATGCTGCGATTACAGATGACTGATGGTCATATA CACTAAGGATGCTGCGATTACAGATGACTGATGGTCATATA < 41bp 1 0.682926527000704 1 0.663956642150879 experiment 0.634146945998592 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61034613 chr13:61034596 nonsynonymous SNV 0.998 4 4 hm5C_associated_SNPs_25928 0 0 1 0 2 TDRD3 chr13:61034674 5'GT 61034674 Upstream 79bp
chr20 42331148 42331148 1 + G A LIHC 42331133 + 42331113 42331153 41 CCTCCCTCCCTGGACAGGACCCTGATGCTTGGTGTGACCTG CCTCCCTCCCTGGACAGGACCCTGATGCTTGGTGTAACCTG < 41bp 1 0.173237305339105 1 0.07310551404953 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42331133 chr20:42331148 nonsynonymous SNV 0.998 2 36 hm5C_associated_SNPs_25929 0 0 1 0 1 MYBL2 chr20:42331130 3'AG 42331130 Downstream 19bp
chr1 39776665 39776665 1 + A G LIHC 39776662 + 39776642 39776682 41 GGACAATGCATTAAGGATTGCAGAGCAAGAGGTAAGCCCTA GGACAATGCATTAAGGATTGCAGGGCAAGAGGTAAGCCCTA < 41bp 1 0.322229936099491 1 0.53981751203537 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39776662 chr1:39776665 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_25930 0 0 1 0 1 MACF1 chr1:39776672 5'GT 39776672 Upstream 8bp
chr1 153745473 153745473 1 + A G LIHC 153745464 + 153745444 153745484 41 TCCACCAAGCCACCCAAGAGCCGGCGAAAAGCAGCTCTGTC TCCACCAAGCCACCCAAGAGCCGGCGAAAGGCAGCTCTGTC < 41bp 1 0.312539116767787 1 0.818607687950134 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control INTS3 ENSG00000143624 CDS Human protein_coding chr1:153745464 chr1:153745473 synonymous SNV . 0 30 hm5C_associated_SNPs_25931 0 0 1 0 2 INTS3 chr1:153745401 3'AG 153745401 Downstream 73bp
chr1 153745473 153745473 1 + A G LIHC 153745464 + 153745444 153745484 41 TCCACCAAGCCACCCAAGAGCCGGCGAAAAGCAGCTCTGTC TCCACCAAGCCACCCAAGAGCCGGCGAAAGGCAGCTCTGTC < 41bp 1 0.312539116767787 1 0.818607687950134 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control INTS3 ENSG00000143624 CDS Human protein_coding chr1:153745464 chr1:153745473 synonymous SNV . 0 30 hm5C_associated_SNPs_25931 0 0 1 0 2 INTS3 chr1:153745557 5'GT 153745557 Upstream 85bp
chr2 109347341 109347341 1 + G T LIHC 109347326 + 109347306 109347346 41 GAAGAAAACACAGACAAAGCCGTTGAATGTTACAGGGTAAG GAAGAAAACACAGACAAAGCCGTTGAATGTTACAGTGTAAG < 41bp 1 0.0650877269223486 1 0.11671257019043 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347326 chr2:109347341 nonsynonymous SNV 0.982 1 36 hm5C_associated_SNPs_25933 0 0 1 0 1 RANBP2 chr2:109347341 3'AG 109347341 Downstream 1bp
chr5 138994189 138994189 1 + C T LIHC 138994200 + 138994180 138994220 41 GGCAAGCTACAATAATGGGGCCAGTAAGTATTCAGATTAAT GGCAAGCTATAATAATGGGGCCAGTAAGTATTCAGATTAAT < 41bp 1 0.0567843860788243 1 0.0651293396949768 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE2D2 ENSG00000131508 CDS Human protein_coding chr5:138994200 chr5:138994189 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_25934 0 0 1 0 1 UBE2D2 chr5:138994202 5'GT 138994202 Upstream 14bp
chr6 116565131 116565131 1 + T C LIHC 116565147 + 116565127 116565167 41 TGGCTACTATCCAAATCCTCCACTGGTCTTATCAAGTGATG TGGCCACTATCCAAATCCTCCACTGGTCTTATCAAGTGATG < 41bp 1 0.199525447657167 1 0.0259374380111694 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NT5DC1 ENSG00000178425 CDS Human protein_coding chr6:116565147 chr6:116565131 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_25935 0 0 1 0 1 NT5DC1 chr6:116565072 3'AG 116565072 Downstream 60bp
chr7 141341107 141341107 1 + C A LIHC 141341103 + 141341083 141341123 41 CACGGGACCTACAGAGAGACCTCCCAATGAACCAGAGGAGA CACGGGACCTACAGAGAGACCTCCAAATGAACCAGAGGAGA < 41bp 1 0.741745828952949 1 0.808171153068542 experiment 0.516508342094102 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGK ENSG00000006530 CDS Human protein_coding chr7:141341103 chr7:141341107 synonymous SNV . 0 25 hm5C_associated_SNPs_25936 0 0 1 0 2 AGK chr7:141341048 3'AG 141341048 Downstream 60bp
chr7 141341107 141341107 1 + C A LIHC 141341103 + 141341083 141341123 41 CACGGGACCTACAGAGAGACCTCCCAATGAACCAGAGGAGA CACGGGACCTACAGAGAGACCTCCAAATGAACCAGAGGAGA < 41bp 1 0.741745828952949 1 0.808171153068542 experiment 0.516508342094102 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGK ENSG00000006530 CDS Human protein_coding chr7:141341103 chr7:141341107 synonymous SNV . 0 25 hm5C_associated_SNPs_25936 0 0 1 0 2 AGK chr7:141341198 5'GT 141341198 Upstream 92bp
chr10 129141983 129141983 1 + G A LIHC 129141964 + 129141944 129141984 41 TCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGT TCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAAT < 41bp 1 0.102229861672246 1 0.179188102483749 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141964 chr10:129141983 nonsynonymous SNV 0.997 1 40 hm5C_associated_SNPs_25937 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 74bp
chr10 129141983 129141983 1 + G A LIHC 129141964 + 129141944 129141984 41 TCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGT TCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAAT < 41bp 1 0.102229861672246 1 0.179188102483749 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141964 chr10:129141983 nonsynonymous SNV 0.997 1 40 hm5C_associated_SNPs_25937 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 28bp
chr10 129141983 129141983 1 + G A LIHC 129141967 + 129141947 129141987 41 TTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGTGCC TTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAATGCC < 41bp 1 0.44818529595263 1 0.576050937175751 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141967 chr10:129141983 nonsynonymous SNV 0.997 1 37 hm5C_associated_SNPs_25938 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 74bp
chr10 129141983 129141983 1 + G A LIHC 129141967 + 129141947 129141987 41 TTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGTGCC TTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAATGCC < 41bp 1 0.44818529595263 1 0.576050937175751 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141967 chr10:129141983 nonsynonymous SNV 0.997 1 37 hm5C_associated_SNPs_25938 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 28bp
chr10 129141983 129141983 1 + G A LIHC 129141980 + 129141960 129142000 41 CCTGCAACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAA CCTGCAACTGGAGAATTTTTCAAATGCCAAGAGAGCCAAAA < 41bp 1 0.193915066625418 1 0.916551947593689 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141980 chr10:129141983 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_25939 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 74bp
chr10 129141983 129141983 1 + G A LIHC 129141980 + 129141960 129142000 41 CCTGCAACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAA CCTGCAACTGGAGAATTTTTCAAATGCCAAGAGAGCCAAAA < 41bp 1 0.193915066625418 1 0.916551947593689 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141980 chr10:129141983 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_25939 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 28bp
chr10 129141983 129141983 1 + G A LIHC 129141986 + 129141966 129142006 41 ACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTA ACTGGAGAATTTTTCAAATGCCAAGAGAGCCAAAATCCTTA < 41bp 1 0.0629816657355068 1 0.288446754217148 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141986 chr10:129141983 nonsynonymous SNV 0.997 1 18 hm5C_associated_SNPs_25940 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 74bp
chr10 129141983 129141983 1 + G A LIHC 129141986 + 129141966 129142006 41 ACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTA ACTGGAGAATTTTTCAAATGCCAAGAGAGCCAAAATCCTTA < 41bp 1 0.0629816657355068 1 0.288446754217148 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141986 chr10:129141983 nonsynonymous SNV 0.997 1 18 hm5C_associated_SNPs_25940 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 28bp
chr10 129141983 129141983 1 + G A LIHC 129141987 + 129141967 129142007 41 CTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAA CTGGAGAATTTTTCAAATGCCAAGAGAGCCAAAATCCTTAA < 41bp 1 0.520848847809832 1 0.327704846858978 experiment 0.958302304380336 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141987 chr10:129141983 nonsynonymous SNV 0.997 1 17 hm5C_associated_SNPs_25941 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 74bp
chr10 129141983 129141983 1 + G A LIHC 129141987 + 129141967 129142007 41 CTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAA CTGGAGAATTTTTCAAATGCCAAGAGAGCCAAAATCCTTAA < 41bp 1 0.520848847809832 1 0.327704846858978 experiment 0.958302304380336 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141987 chr10:129141983 nonsynonymous SNV 0.997 1 17 hm5C_associated_SNPs_25941 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 28bp
chr10 129141983 129141983 1 + G A LIHC 129141995 + 129141975 129142015 41 TTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAACAAGTAAG TTTTTCAAATGCCAAGAGAGCCAAAATCCTTAACAAGTAAG < 41bp 1 0.0800172782137109 1 0.280232131481171 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141995 chr10:129141983 nonsynonymous SNV 0.997 1 9 hm5C_associated_SNPs_25942 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 74bp
chr10 129141983 129141983 1 + G A LIHC 129141995 + 129141975 129142015 41 TTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAACAAGTAAG TTTTTCAAATGCCAAGAGAGCCAAAATCCTTAACAAGTAAG < 41bp 1 0.0800172782137109 1 0.280232131481171 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141995 chr10:129141983 nonsynonymous SNV 0.997 1 9 hm5C_associated_SNPs_25942 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 28bp
chr10 129141983 129141983 1 + G A LIHC 129142002 + 129141982 129142022 41 AGTGCCAAGAGAGCCAAAATCCTTAACAAGTAAGTTCTCAT AATGCCAAGAGAGCCAAAATCCTTAACAAGTAAGTTCTCAT < 41bp 1 0.0627927312646508 1 0.373353034257889 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129142002 chr10:129141983 nonsynonymous SNV 0.997 1 2 hm5C_associated_SNPs_25943 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 74bp
chr10 129141983 129141983 1 + G A LIHC 129142002 + 129141982 129142022 41 AGTGCCAAGAGAGCCAAAATCCTTAACAAGTAAGTTCTCAT AATGCCAAGAGAGCCAAAATCCTTAACAAGTAAGTTCTCAT < 41bp 1 0.0627927312646508 1 0.373353034257889 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129142002 chr10:129141983 nonsynonymous SNV 0.997 1 2 hm5C_associated_SNPs_25943 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 28bp
chr10 129141983 129141983 1 + G A LIHC 129142003 + 129141983 129142023 41 GTGCCAAGAGAGCCAAAATCCTTAACAAGTAAGTTCTCATC ATGCCAAGAGAGCCAAAATCCTTAACAAGTAAGTTCTCATC < 41bp 1 0.212490824761914 1 0.382373303174973 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129142003 chr10:129141983 nonsynonymous SNV 0.997 1 1 hm5C_associated_SNPs_25944 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 74bp
chr10 129141983 129141983 1 + G A LIHC 129142003 + 129141983 129142023 41 GTGCCAAGAGAGCCAAAATCCTTAACAAGTAAGTTCTCATC ATGCCAAGAGAGCCAAAATCCTTAACAAGTAAGTTCTCATC < 41bp 1 0.212490824761914 1 0.382373303174973 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129142003 chr10:129141983 nonsynonymous SNV 0.997 1 1 hm5C_associated_SNPs_25944 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 28bp
chr11 61725744 61725744 1 + T C LIHC 61725725 + 61725705 61725745 41 GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGCAGTT GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGCAGCT < 41bp 1 0.211441317105485 1 0.280251920223236 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61725725 chr11:61725744 nonsynonymous SNV 0.999 5 40 hm5C_associated_SNPs_25945 0 0 0 1 1 BEST1 chr11:61725770 5'GT 61725770 Upstream 27bp
chr11 74915456 74915456 1 + T C LIHC 74915455 + 74915435 74915475 41 CTTTCCCCAGGTTCATCGGCCTCCAGTTCTTCTTCAAAACA CTTTCCCCAGGTTCATCGGCCCCCAGTTCTTCTTCAAAACA < 41bp 1 0.173179585105993 1 0.0728082656860352 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74915455 chr11:74915456 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_25946 0 0 0 0 1 SLCO2B1 chr11:74915445 3'AG 74915445 Downstream 12bp
chr11 122817436 122817436 1 + A G LIHC 122817446 + 122817426 122817466 41 AGCCGTAGCAATTCTGAAGGCTATCTGTTTCAACTGGAAAA AGCCGTAGCAGTTCTGAAGGCTATCTGTTTCAACTGGAAAA < 41bp 1 0.113210554046516 1 0.0677318274974823 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122817446 chr11:122817436 nonsynonymous SNV 0.988 1 11 hm5C_associated_SNPs_25947 0 0 0 0 1 C11orf63 chr11:122817500 5'GT 122817500 Upstream 65bp
chr12 124158173 124158173 1 + A G LIHC 124158178 + 124158158 124158198 41 TCAGAAGGTGTTGGAAGTGACAGTGAGGTGGAAGAGAGGTC TCAGAAGGTGTTGGAGGTGACAGTGAGGTGGAAGAGAGGTC < 41bp 1 0.388053733158726 1 0.404004871845245 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124158178 chr12:124158173 synonymous SNV . 0 16 hm5C_associated_SNPs_25949 0 0 1 0 2 TCTN2 chr12:124158162 3'AG 124158162 Downstream 12bp
chr12 124158173 124158173 1 + A G LIHC 124158178 + 124158158 124158198 41 TCAGAAGGTGTTGGAAGTGACAGTGAGGTGGAAGAGAGGTC TCAGAAGGTGTTGGAGGTGACAGTGAGGTGGAAGAGAGGTC < 41bp 1 0.388053733158726 1 0.404004871845245 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124158178 chr12:124158173 synonymous SNV . 0 16 hm5C_associated_SNPs_25949 0 0 1 0 2 TCTN2 chr12:124158165 3'AG 124158165 Downstream 9bp
chr16 69279693 69279693 1 + C A LIHC 69279685 + 69279665 69279705 41 TCTCAAAATGTGCTTTGCTGCTAGAAACCTAAGCATGCCGG TCTCAAAATGTGCTTTGCTGCTAGAAACATAAGCATGCCGG < 41bp 1 0.756748541176502 1 0.721188187599182 experiment 0.486502917646995 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNTB2 ENSG00000168807 CDS Human protein_coding chr16:69279685 chr16:69279693 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_25950 0 0 1 0 1 SNTB2 chr16:69279718 5'GT 69279718 Upstream 26bp
chr16 69279693 69279693 1 + C A LIHC 69279708 + 69279688 69279728 41 GAAACCTAAGCATGCCGGATCTGGAAAACAGGTGAGGTGTA GAAACATAAGCATGCCGGATCTGGAAAACAGGTGAGGTGTA < 41bp 1 0.701865262285378 1 0.707379579544067 experiment 0.596269475429245 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNTB2 ENSG00000168807 CDS Human protein_coding chr16:69279708 chr16:69279693 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_25951 0 0 1 0 1 SNTB2 chr16:69279718 5'GT 69279718 Upstream 26bp
chrX 48369828 48369828 1 + T C LIHC 48369821 + 48369801 48369841 41 GCTGTTCCTCTGCCGACATTCCTCCCATCGAGGCGTCTTCC GCTGTTCCTCTGCCGACATTCCTCCCACCGAGGCGTCTTCC < 41bp 1 0.0891736993107765 1 0.154280722141266 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PORCN ENSG00000102312 CDS Human protein_coding chrX:48369821 chrX:48369828 nonsynonymous SNV . 0 28 hm5C_associated_SNPs_25953 0 0 0 0 2 PORCN chrX:48369754 3'AG 48369754 Downstream 75bp
chrX 48369828 48369828 1 + T C LIHC 48369821 + 48369801 48369841 41 GCTGTTCCTCTGCCGACATTCCTCCCATCGAGGCGTCTTCC GCTGTTCCTCTGCCGACATTCCTCCCACCGAGGCGTCTTCC < 41bp 1 0.0891736993107765 1 0.154280722141266 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PORCN ENSG00000102312 CDS Human protein_coding chrX:48369821 chrX:48369828 nonsynonymous SNV . 0 28 hm5C_associated_SNPs_25953 0 0 0 0 2 PORCN chrX:48369875 5'GT 48369875 Upstream 48bp
chr1 228333733 228333733 1 + C T LIHC 228333718 + 228333698 228333738 41 CCCCGATGGGTGACAGGTCTCTCTGCTAGATACCACGAGGA CCCCGATGGGTGACAGGTCTCTCTGCTAGATACCATGAGGA < 41bp 1 0.562659191790286 1 0.219828575849533 experiment 0.874681616419427 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333718 chr1:228333733 nonsynonymous SNV 0.363 3 36 hm5C_associated_SNPs_25954 0 0 1 0 2 GUK1 chr1:228333727 3'AG 228333727 Downstream 7bp
chr1 228333733 228333733 1 + C T LIHC 228333718 + 228333698 228333738 41 CCCCGATGGGTGACAGGTCTCTCTGCTAGATACCACGAGGA CCCCGATGGGTGACAGGTCTCTCTGCTAGATACCATGAGGA < 41bp 1 0.562659191790286 1 0.219828575849533 experiment 0.874681616419427 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333718 chr1:228333733 nonsynonymous SNV 0.363 3 36 hm5C_associated_SNPs_25954 0 0 1 0 2 GUK1 chr1:228333768 5'GT 228333768 Upstream 36bp
chr11 31392389 31392389 1 + C A LIHC 31392369 + 31392349 31392389 41 AGACCCATCTGCAAATATATCAGACCTAAAACAAAAATATC AGACCCATCTGCAAATATATCAGACCTAAAACAAAAATATA < 41bp 1 0.321291905297636 1 0.193133801221848 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC24 ENSG00000170946 CDS Human protein_coding chr11:31392369 chr11:31392389 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_25956 0 0 1 0 1 DNAJC24 chr11:31392406 5'GT 31392406 Upstream 18bp
chr15 57554327 57554327 1 + T C LIHC 57554318 + 57554298 57554338 41 ACTCATCGGGAAGACTCTGTCAGTCTCAATGGCAATCATTC ACTCATCGGGAAGACTCTGTCAGTCTCAACGGCAATCATTC < 41bp 1 0.252218237658883 1 0.605236947536469 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554318 chr15:57554327 synonymous SNV . 0 30 hm5C_associated_SNPs_25957 0 0 1 0 2 TCF12 chr15:57554292 3'AG 57554292 Downstream 36bp
chr15 57554327 57554327 1 + T C LIHC 57554318 + 57554298 57554338 41 ACTCATCGGGAAGACTCTGTCAGTCTCAATGGCAATCATTC ACTCATCGGGAAGACTCTGTCAGTCTCAACGGCAATCATTC < 41bp 1 0.252218237658883 1 0.605236947536469 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554318 chr15:57554327 synonymous SNV . 0 30 hm5C_associated_SNPs_25957 0 0 1 0 2 TCF12 chr15:57554406 5'GT 57554406 Upstream 80bp
chr15 57554327 57554327 1 + T C LIHC 57554338 + 57554318 57554358 41 CAGTCTCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCA CAGTCTCAACGGCAATCATTCAGTCCTGTCTAGTACAGTCA < 41bp 1 0.155489351355314 1 0.117291778326035 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554338 chr15:57554327 synonymous SNV . 0 10 hm5C_associated_SNPs_25958 0 0 1 0 2 TCF12 chr15:57554292 3'AG 57554292 Downstream 36bp
chr15 57554327 57554327 1 + T C LIHC 57554338 + 57554318 57554358 41 CAGTCTCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCA CAGTCTCAACGGCAATCATTCAGTCCTGTCTAGTACAGTCA < 41bp 1 0.155489351355314 1 0.117291778326035 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554338 chr15:57554327 synonymous SNV . 0 10 hm5C_associated_SNPs_25958 0 0 1 0 2 TCF12 chr15:57554406 5'GT 57554406 Upstream 80bp
chr15 57554327 57554327 1 + T C LIHC 57554343 + 57554323 57554363 41 TCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCACTACT TCAACGGCAATCATTCAGTCCTGTCTAGTACAGTCACTACT < 41bp 1 0.0993121983132052 1 0.0359518826007843 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554343 chr15:57554327 synonymous SNV . 0 5 hm5C_associated_SNPs_25959 0 0 1 0 2 TCF12 chr15:57554292 3'AG 57554292 Downstream 36bp
chr15 57554327 57554327 1 + T C LIHC 57554343 + 57554323 57554363 41 TCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCACTACT TCAACGGCAATCATTCAGTCCTGTCTAGTACAGTCACTACT < 41bp 1 0.0993121983132052 1 0.0359518826007843 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554343 chr15:57554327 synonymous SNV . 0 5 hm5C_associated_SNPs_25959 0 0 1 0 2 TCF12 chr15:57554406 5'GT 57554406 Upstream 80bp
chr15 64410404 64410404 1 + A G LIHC 64410406 + 64410386 64410426 41 TTCTCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCC TTCTCTTCCTCCTCAGGAGGCCACAAATTCTTCGAAGCCCC < 41bp 1 0.197815688496779 1 0.20588406920433 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410406 chr15:64410404 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_25960 0 0 1 0 3 SNX1 chr15:64410316 3'AG 64410316 Downstream 89bp
chr15 64410404 64410404 1 + A G LIHC 64410406 + 64410386 64410426 41 TTCTCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCC TTCTCTTCCTCCTCAGGAGGCCACAAATTCTTCGAAGCCCC < 41bp 1 0.197815688496779 1 0.20588406920433 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410406 chr15:64410404 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_25960 0 0 1 0 3 SNX1 chr15:64410402 3'AG 64410402 Downstream 3bp
chr15 64410404 64410404 1 + A G LIHC 64410406 + 64410386 64410426 41 TTCTCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCC TTCTCTTCCTCCTCAGGAGGCCACAAATTCTTCGAAGCCCC < 41bp 1 0.197815688496779 1 0.20588406920433 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410406 chr15:64410404 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_25960 0 0 1 0 3 SNX1 chr15:64410443 5'GT 64410443 Upstream 40bp
chr15 64410404 64410404 1 + A G LIHC 64410409 + 64410389 64410429 41 TCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCCAGC TCTTCCTCCTCAGGAGGCCACAAATTCTTCGAAGCCCCAGC < 41bp 1 0.188510839772759 1 0.36113315820694 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410409 chr15:64410404 nonsynonymous SNV . 0 16 hm5C_associated_SNPs_25961 0 0 1 0 3 SNX1 chr15:64410316 3'AG 64410316 Downstream 89bp
chr15 64410404 64410404 1 + A G LIHC 64410409 + 64410389 64410429 41 TCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCCAGC TCTTCCTCCTCAGGAGGCCACAAATTCTTCGAAGCCCCAGC < 41bp 1 0.188510839772759 1 0.36113315820694 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410409 chr15:64410404 nonsynonymous SNV . 0 16 hm5C_associated_SNPs_25961 0 0 1 0 3 SNX1 chr15:64410402 3'AG 64410402 Downstream 3bp
chr15 64410404 64410404 1 + A G LIHC 64410409 + 64410389 64410429 41 TCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCCAGC TCTTCCTCCTCAGGAGGCCACAAATTCTTCGAAGCCCCAGC < 41bp 1 0.188510839772759 1 0.36113315820694 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410409 chr15:64410404 nonsynonymous SNV . 0 16 hm5C_associated_SNPs_25961 0 0 1 0 3 SNX1 chr15:64410443 5'GT 64410443 Upstream 40bp
chr11 62557369 62557369 1 + G T LIHC 62557360 + 62557340 62557380 41 TGTCCCTGTCTCCTACAGACCTCTTCTTGGGTGAATTTGGT TGTCCCTGTCTCCTACAGACCTCTTCTTGTGTGAATTTGGT < 41bp 1 0.0859658943694628 1 0.0444935858249664 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM179B ENSG00000185475 CDS Human protein_coding chr11:62557360 chr11:62557369 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_25965 0 0 1 0 1 TMEM179B chr11:62557358 3'AG 62557358 Downstream 12bp
chr11 62557369 62557369 1 + G T LIHC 62557362 + 62557342 62557382 41 TCCCTGTCTCCTACAGACCTCTTCTTGGGTGAATTTGGTAT TCCCTGTCTCCTACAGACCTCTTCTTGTGTGAATTTGGTAT < 41bp 1 0.110019072082909 1 0.0729668438434601 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TMEM179B ENSG00000185475 CDS Human protein_coding chr11:62557362 chr11:62557369 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_25966 0 0 1 0 1 TMEM179B chr11:62557358 3'AG 62557358 Downstream 12bp
chr13 28752020 28752020 1 + C A LIHC 28752016 + 28751996 28752036 41 TTTCAGATCCTCTAACATCACCTGCTTCATCCTTGTTTAAT TTTCAGATCCTCTAACATCACCTGATTCATCCTTGTTTAAT < 41bp 1 0.356424275045759 1 0.0564401745796204 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752016 chr13:28752020 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_25967 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 19bp
chr13 28752020 28752020 1 + C A LIHC 28752016 + 28751996 28752036 41 TTTCAGATCCTCTAACATCACCTGCTTCATCCTTGTTTAAT TTTCAGATCCTCTAACATCACCTGATTCATCCTTGTTTAAT < 41bp 1 0.356424275045759 1 0.0564401745796204 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752016 chr13:28752020 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_25967 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 53bp
chr13 28752020 28752020 1 + C A LIHC 28752017 + 28751997 28752037 41 TTCAGATCCTCTAACATCACCTGCTTCATCCTTGTTTAATG TTCAGATCCTCTAACATCACCTGATTCATCCTTGTTTAATG < 41bp 1 0.200698314613837 1 0.0555157065391541 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752017 chr13:28752020 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_25968 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 19bp
chr13 28752020 28752020 1 + C A LIHC 28752017 + 28751997 28752037 41 TTCAGATCCTCTAACATCACCTGCTTCATCCTTGTTTAATG TTCAGATCCTCTAACATCACCTGATTCATCCTTGTTTAATG < 41bp 1 0.200698314613837 1 0.0555157065391541 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752017 chr13:28752020 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_25968 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 53bp
chr13 28752020 28752020 1 + C A LIHC 28752023 + 28752003 28752043 41 TCCTCTAACATCACCTGCTTCATCCTTGTTTAATGACTTTG TCCTCTAACATCACCTGATTCATCCTTGTTTAATGACTTTG < 41bp 1 0.13681297163222 1 0.0913402736186981 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752023 chr13:28752020 nonsynonymous SNV 1.000 0 18 hm5C_associated_SNPs_25969 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 19bp
chr13 28752020 28752020 1 + C A LIHC 28752023 + 28752003 28752043 41 TCCTCTAACATCACCTGCTTCATCCTTGTTTAATGACTTTG TCCTCTAACATCACCTGATTCATCCTTGTTTAATGACTTTG < 41bp 1 0.13681297163222 1 0.0913402736186981 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752023 chr13:28752020 nonsynonymous SNV 1.000 0 18 hm5C_associated_SNPs_25969 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 53bp
chr13 28752020 28752020 1 + C A LIHC 28752026 + 28752006 28752046 41 TCTAACATCACCTGCTTCATCCTTGTTTAATGACTTTGGTG TCTAACATCACCTGATTCATCCTTGTTTAATGACTTTGGTG < 41bp 1 0.0977034898953551 1 0.109019011259079 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752026 chr13:28752020 nonsynonymous SNV 1.000 0 15 hm5C_associated_SNPs_25970 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 19bp
chr13 28752020 28752020 1 + C A LIHC 28752026 + 28752006 28752046 41 TCTAACATCACCTGCTTCATCCTTGTTTAATGACTTTGGTG TCTAACATCACCTGATTCATCCTTGTTTAATGACTTTGGTG < 41bp 1 0.0977034898953551 1 0.109019011259079 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752026 chr13:28752020 nonsynonymous SNV 1.000 0 15 hm5C_associated_SNPs_25970 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 53bp
chr13 28752020 28752020 1 + C A LIHC 28752027 + 28752007 28752047 41 CTAACATCACCTGCTTCATCCTTGTTTAATGACTTTGGTGC CTAACATCACCTGATTCATCCTTGTTTAATGACTTTGGTGC < 41bp 1 0.170483100805132 1 0.0606861710548401 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752027 chr13:28752020 nonsynonymous SNV 1.000 0 14 hm5C_associated_SNPs_25971 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 19bp
chr13 28752020 28752020 1 + C A LIHC 28752027 + 28752007 28752047 41 CTAACATCACCTGCTTCATCCTTGTTTAATGACTTTGGTGC CTAACATCACCTGATTCATCCTTGTTTAATGACTTTGGTGC < 41bp 1 0.170483100805132 1 0.0606861710548401 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752027 chr13:28752020 nonsynonymous SNV 1.000 0 14 hm5C_associated_SNPs_25971 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 53bp
chr16 28845485 28845485 1 + C A LIHC 28845478 + 28845458 28845498 41 GCAGGCCAGAGTGGGCTATACAGCCCCCAGTACATCTCCTA GCAGGCCAGAGTGGGCTATACAGCCCCAAGTACATCTCCTA < 41bp 1 0.442953514002533 1 0.226183831691742 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28845478 chr16:28845485 nonsynonymous SNV 0.998 2 28 hm5C_associated_SNPs_25972 0 0 1 0 1 ATXN2L chr16:28845532 5'GT 28845532 Upstream 48bp
chr16 50813908 50813908 1 + A G LIHC 50813901 + 50813881 50813921 41 CCTCCTTTCTATGGGGTAATCCGTTGGATCGGTCAGCCACC CCTCCTTTCTATGGGGTAATCCGTTGGGTCGGTCAGCCACC < 41bp 1 0.34611244451449 1 0.210178464651108 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CYLD ENSG00000083799 CDS Human protein_coding chr16:50813901 chr16:50813908 nonsynonymous SNV 0.998 2 28 hm5C_associated_SNPs_25973 0 0 0 0 1 CYLD chr16:50813955 5'GT 50813955 Upstream 48bp
chr2 32668600 32668600 1 + T C LIHC 32668612 + 32668592 32668632 41 TGGACCTGTTCTGTTGAAGGCTTTACTTGATAATATGTCAT TGGACCTGCTCTGTTGAAGGCTTTACTTGATAATATGTCAT < 41bp 1 0.0413865403683321 1 0.0878930985927582 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32668612 chr2:32668600 nonsynonymous SNV 0.997 1 9 hm5C_associated_SNPs_25974 0 0 1 0 2 BIRC6 chr2:32668559 3'AG 32668559 Downstream 42bp
chr2 32668600 32668600 1 + T C LIHC 32668612 + 32668592 32668632 41 TGGACCTGTTCTGTTGAAGGCTTTACTTGATAATATGTCAT TGGACCTGCTCTGTTGAAGGCTTTACTTGATAATATGTCAT < 41bp 1 0.0413865403683321 1 0.0878930985927582 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32668612 chr2:32668600 nonsynonymous SNV 0.997 1 9 hm5C_associated_SNPs_25974 0 0 1 0 2 BIRC6 chr2:32668656 5'GT 32668656 Upstream 57bp
chr3 9976551 9976551 1 + A G LIHC 9976545 + 9976525 9976565 41 GAGAGAACCATCCGGGACAACTTTGGAGGTGGAAACACTGC GAGAGAACCATCCGGGACAACTTTGGGGGTGGAAACACTGC < 41bp 1 0.114312620549392 1 0.163980185985565 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976545 chr3:9976551 synonymous SNV . 0 27 hm5C_associated_SNPs_25975 0 0 1 4 2 CRELD1 chr3:9976519 3'AG 9976519 Downstream 33bp
chr3 9976551 9976551 1 + A G LIHC 9976545 + 9976525 9976565 41 GAGAGAACCATCCGGGACAACTTTGGAGGTGGAAACACTGC GAGAGAACCATCCGGGACAACTTTGGGGGTGGAAACACTGC < 41bp 1 0.114312620549392 1 0.163980185985565 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976545 chr3:9976551 synonymous SNV . 0 27 hm5C_associated_SNPs_25975 0 0 1 4 2 CRELD1 chr3:9976601 5'GT 9976601 Upstream 51bp
chr3 183369018 183369018 1 + C A LIHC 183369020 + 183369000 183369040 41 CATGAAGCAAGACGGTACCACATACTTGGGAATGAAATGAT CATGAAGCAAGACGGTACAACATACTTGGGAATGAAATGAT < 41bp 1 0.123688764317323 1 0.125989437103271 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLHL24 ENSG00000114796 CDS Human protein_coding chr3:183369020 chr3:183369018 nonsynonymous SNV 0.999 4 19 hm5C_associated_SNPs_25976 0 0 1 0 1 KLHL24 chr3:183369064 5'GT 183369064 Upstream 47bp
chr6 131900296 131900296 1 + C A LIHC 131900277 + 131900257 131900297 41 ATGTGAAGGATTATGGGGACCTGCCCTTTGCTGACATCCCT ATGTGAAGGATTATGGGGACCTGCCCTTTGCTGACATCCAT < 41bp 1 0.39737714947621 1 0.0550163984298706 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARG1 ENSG00000118520 CDS Human protein_coding chr6:131900277 chr6:131900296 nonsynonymous SNV 0.876 1 40 hm5C_associated_SNPs_25978 0 0 0 0 2 ARG1 chr6:131900227 3'AG 131900227 Downstream 70bp
chr6 131900296 131900296 1 + C A LIHC 131900277 + 131900257 131900297 41 ATGTGAAGGATTATGGGGACCTGCCCTTTGCTGACATCCCT ATGTGAAGGATTATGGGGACCTGCCCTTTGCTGACATCCAT < 41bp 1 0.39737714947621 1 0.0550163984298706 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARG1 ENSG00000118520 CDS Human protein_coding chr6:131900277 chr6:131900296 nonsynonymous SNV 0.876 1 40 hm5C_associated_SNPs_25978 0 0 0 0 2 ARG1 chr6:131900251 3'AG 131900251 Downstream 46bp
chr10 3176697 3176697 1 + A G LIHC 3176685 + 3176665 3176705 41 CCACCAACAGGGTGGGGCACCCTCTCCATTTGATAGAAACT CCACCAACAGGGTGGGGCACCCTCTCCATTTGGTAGAAACT < 41bp 1 0.0105231122241109 1 0.0442876219749451 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PFKP ENSG00000067057 CDS Human protein_coding chr10:3176685 chr10:3176697 nonsynonymous SNV 0.660 5 33 hm5C_associated_SNPs_25979 0 0 1 0 1 PFKP chr10:3176774 5'GT 3176774 Upstream 78bp
chr10 3176697 3176697 1 + A G LIHC 3176688 + 3176668 3176708 41 CCAACAGGGTGGGGCACCCTCTCCATTTGATAGAAACTTTG CCAACAGGGTGGGGCACCCTCTCCATTTGGTAGAAACTTTG < 41bp 1 0.728909745316767 1 0.943609178066254 experiment 0.542180509366467 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PFKP ENSG00000067057 CDS Human protein_coding chr10:3176688 chr10:3176697 nonsynonymous SNV 0.660 5 30 hm5C_associated_SNPs_25980 0 0 1 0 1 PFKP chr10:3176774 5'GT 3176774 Upstream 78bp
chr11 75110602 75110602 1 + A G LIHC 75110585 + 75110565 75110605 41 TTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTGCAAAT TTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTGCGAAT < 41bp 1 0.656830924213632 1 0.513213753700256 experiment 0.686338151572737 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS3 ENSG00000149273 CDS Human protein_coding chr11:75110585 chr11:75110602 nonsynonymous SNV 0.982 1 38 hm5C_associated_SNPs_25981 0 0 1 0 1 RPS3 chr11:75110621 5'GT 75110621 Upstream 20bp
chr11 120280137 120280137 1 + G T LIHC 120280127 + 120280107 120280147 41 CTCCTCCAAGAAGACAAAGTCTAGTTCAGAGGAGAGTAGAT CTCCTCCAAGAAGACAAAGTCTAGTTCAGATGAGAGTAGAT < 41bp 1 0.173841247179326 1 0.446900129318237 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120280127 chr11:120280137 nonsynonymous SNV 1.000 0 31 hm5C_associated_SNPs_25982 0 0 1 0 2 ARHGEF12 chr11:120280103 3'AG 120280103 Downstream 35bp
chr11 120280137 120280137 1 + G T LIHC 120280127 + 120280107 120280147 41 CTCCTCCAAGAAGACAAAGTCTAGTTCAGAGGAGAGTAGAT CTCCTCCAAGAAGACAAAGTCTAGTTCAGATGAGAGTAGAT < 41bp 1 0.173841247179326 1 0.446900129318237 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120280127 chr11:120280137 nonsynonymous SNV 1.000 0 31 hm5C_associated_SNPs_25982 0 0 1 0 2 ARHGEF12 chr11:120280159 5'GT 120280159 Upstream 23bp
chr12 50452863 50452863 1 + A G LIHC 50452871 + 50452851 50452891 41 GCCAAGTCTCCAAGAATGACCTGTATCATGCTGGGGAGCTG GCCAAGTCTCCAGGAATGACCTGTATCATGCTGGGGAGCTG < 41bp 1 0.645999666499122 1 0.286311239004135 experiment 0.708000667001756 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50452871 chr12:50452863 nonsynonymous SNV 1.000 0 13 hm5C_associated_SNPs_25983 0 0 0 0 1 ASIC1 chr12:50452911 5'GT 50452911 Upstream 49bp
chr18 55996245 55996245 1 + G T LIHC 55996248 + 55996228 55996268 41 GACGTGTCCTCGGAGTCGGACAATAACATCAGACAGATCAA GACGTGTCCTCGGAGTCTGACAATAACATCAGACAGATCAA < 41bp 1 0.36782580924387 1 0.483042448759079 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NEDD4L ENSG00000049759 CDS Human protein_coding chr18:55996248 chr18:55996245 synonymous SNV . 0 18 hm5C_associated_SNPs_25986 0 0 1 0 1 NEDD4L chr18:55996227 3'AG 55996227 Downstream 19bp
chr19 46202122 46202122 1 + C T LIHC 46202126 + 46202106 46202146 41 CTACAGCCACTTCCCTCGCACGGTCCGCTGGTTCCATCGGC CTACAGCCACTTCCCTTGCACGGTCCGCTGGTTCCATCGGC < 41bp 1 0.162553437320532 1 0.687031030654907 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control QPCTL ENSG00000011478 CDS Human protein_coding chr19:46202126 chr19:46202122 nonsynonymous SNV 0.140 2 17 hm5C_associated_SNPs_25987 0 0 1 0 2 QPCTL chr19:46202059 3'AG 46202059 Downstream 64bp
chr19 46202122 46202122 1 + C T LIHC 46202126 + 46202106 46202146 41 CTACAGCCACTTCCCTCGCACGGTCCGCTGGTTCCATCGGC CTACAGCCACTTCCCTTGCACGGTCCGCTGGTTCCATCGGC < 41bp 1 0.162553437320532 1 0.687031030654907 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control QPCTL ENSG00000011478 CDS Human protein_coding chr19:46202126 chr19:46202122 nonsynonymous SNV 0.140 2 17 hm5C_associated_SNPs_25987 0 0 1 0 2 QPCTL chr19:46202158 5'GT 46202158 Upstream 37bp
chr1 230822734 230822734 1 + G T LIHC 230822730 + 230822710 230822750 41 TCCCAAGGAGATCAAGAAACCTTTGGTAACTGGTAGCAAAG TCCCAAGGAGATCAAGAAACCTTTTGTAACTGGTAGCAAAG < 41bp 1 0.157102488368811 1 0.0466184318065643 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COG2 ENSG00000135775 CDS Human protein_coding chr1:230822730 chr1:230822734 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_25988 0 0 0 0 1 COG2 chr1:230822681 3'AG 230822681 Downstream 54bp
chr11 45948313 45948313 1 + C T LIHC 45948298 + 45948278 45948318 41 CACAACTGGACGAGGAAGACCCCTGCTTTGAGTTCCGGCAG CACAACTGGACGAGGAAGACCCCTGCTTTGAGTTCTGGCAG < 41bp 1 0.199344061006853 1 0.395888268947601 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45948298 chr11:45948313 nonsynonymous SNV 0.994 3 36 hm5C_associated_SNPs_25989 0 0 0 0 1 LARGE2 chr11:45948262 3'AG 45948262 Downstream 52bp
chr4 39747379 39747379 1 + A T LIHC 39747383 + 39747363 39747403 41 TTTTTTTAGGAGGAAGATACCAACTAGAGATAAAAATACCA TTTTTTTAGGAGGAAGTTACCAACTAGAGATAAAAATACCA < 41bp 1 0.385332114161196 1 0.643512308597565 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE2K ENSG00000078140 CDS Human protein_coding chr4:39747383 chr4:39747379 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_25990 0 0 1 0 2 UBE2K chr4:39747372 3'AG 39747372 Downstream 8bp
chr4 39747379 39747379 1 + A T LIHC 39747383 + 39747363 39747403 41 TTTTTTTAGGAGGAAGATACCAACTAGAGATAAAAATACCA TTTTTTTAGGAGGAAGTTACCAACTAGAGATAAAAATACCA < 41bp 1 0.385332114161196 1 0.643512308597565 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE2K ENSG00000078140 CDS Human protein_coding chr4:39747383 chr4:39747379 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_25990 0 0 1 0 2 UBE2K chr4:39747430 5'GT 39747430 Upstream 52bp
chr17 1733407 1733407 1 + A G LIHC 1733413 + 1733393 1733433 41 CGGCCAACTGAGCGAGGGGGCCATTGCGGTGAGGAGGTGCC CGGCCAACTGAGCGGGGGGGCCATTGCGGTGAGGAGGTGCC < 41bp 1 0.123906440870855 1 0.279147386550903 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPA1 ENSG00000132383 CDS Human protein_coding chr17:1733413 chr17:1733407 nonsynonymous SNV 0.997 2 15 hm5C_associated_SNPs_25991 0 0 1 0 1 RPA1 chr17:1733420 5'GT 1733420 Upstream 14bp
chr1 112305374 112305374 1 + A G LIHC 112305377 + 112305357 112305397 41 TGGATTGGGAGACATACATGCATCGGATTGGGAGAGCTGGC TGGATTGGGAGACATACGTGCATCGGATTGGGAGAGCTGGC < 41bp 1 0.382861008611311 1 0.116467028856277 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX20 ENSG00000064703 CDS Human protein_coding chr1:112305377 chr1:112305374 nonsynonymous SNV 0.998 2 18 hm5C_associated_SNPs_25992 0 0 1 0 2 DDX20 chr1:112305299 3'AG 112305299 Downstream 76bp
chr1 112305374 112305374 1 + A G LIHC 112305377 + 112305357 112305397 41 TGGATTGGGAGACATACATGCATCGGATTGGGAGAGCTGGC TGGATTGGGAGACATACGTGCATCGGATTGGGAGAGCTGGC < 41bp 1 0.382861008611311 1 0.116467028856277 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX20 ENSG00000064703 CDS Human protein_coding chr1:112305377 chr1:112305374 nonsynonymous SNV 0.998 2 18 hm5C_associated_SNPs_25992 0 0 1 0 2 DDX20 chr1:112305404 5'GT 112305404 Upstream 31bp
chr9 125772702 125772702 1 + G C LIHC 125772700 + 125772680 125772720 41 TGTATGCTTGGAAAGTGAATCAGAAAGAGAGAGGAGGAAAA TGTATGCTTGGAAAGTGAATCACAAAGAGAGAGGAGGAAAA < 41bp 1 0.564101898657365 1 0.295960932970047 experiment 0.87179620268527 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABGAP1 ENSG00000011454 CDS Human protein_coding chr9:125772700 chr9:125772702 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_25994 0 0 1 0 1 RABGAP1 chr9:125772633 3'AG 125772633 Downstream 70bp
chr10 17278320 17278320 1 + T C LIHC 17278316 + 17278296 17278336 41 CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTCAAAA CTAATCTGGATTCACTCCCTCTGGCTGATACCCACTCAAAA < 41bp 1 0.223275602314951 1 0.597391605377197 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278316 chr10:17278320 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_25995 0 0 1 0 2 VIM chr10:17278293 3'AG 17278293 Downstream 28bp
chr10 17278320 17278320 1 + T C LIHC 17278316 + 17278296 17278336 41 CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTCAAAA CTAATCTGGATTCACTCCCTCTGGCTGATACCCACTCAAAA < 41bp 1 0.223275602314951 1 0.597391605377197 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278316 chr10:17278320 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_25995 0 0 1 0 2 VIM chr10:17278378 5'GT 17278378 Upstream 59bp
chr11 118939942 118939942 1 + T C LIHC 118939940 + 118939920 118939960 41 GATCTGGTTCTTGCCACGTTCCTACAGCTTACAGGCTTCCA GATCTGGTTCTTGCCACGTTCCCACAGCTTACAGGCTTCCA < 41bp 1 0.142500416881349 1 0.468229621648788 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VPS11 ENSG00000160695 splicing Human protein_coding chr11:118939940 chr11:118939942 . 0.995 1 23 hm5C_associated_SNPs_25996 0 0 0 0 1 VPS11 chr11:118939884 3'AG 118939884 Downstream 59bp
chrX 129173222 129173222 1 + T C LIHC 129173210 + 129173190 129173230 41 GGCTACCTACTCGGGTCAGACAGCCATGAAGCTGGCCAGCA GGCTACCTACTCGGGTCAGACAGCCATGAAGCCGGCCAGCA < 41bp 1 0.388851005969737 1 0.608536601066589 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129173210 chrX:129173222 nonsynonymous SNV 0.995 3 33 hm5C_associated_SNPs_25997 0 0 0 0 1 BCORL1 chrX:129173257 5'GT 129173257 Upstream 36bp
chr14 75190045 75190045 1 + A C LIHC 75190025 + 75190005 75190045 41 CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTCTA CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTCTC < 41bp 1 0.748378597740862 1 0.239390701055527 experiment 0.503242804518277 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCF1 ENSG00000119616 CDS Human protein_coding chr14:75190025 chr14:75190045 synonymous SNV . 0 41 hm5C_associated_SNPs_25999 0 0 1 2 2 FCF1 chr14:75189975 3'AG 75189975 Downstream 71bp
chr14 75190045 75190045 1 + A C LIHC 75190025 + 75190005 75190045 41 CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTCTA CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTCTC < 41bp 1 0.748378597740862 1 0.239390701055527 experiment 0.503242804518277 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCF1 ENSG00000119616 CDS Human protein_coding chr14:75190025 chr14:75190045 synonymous SNV . 0 41 hm5C_associated_SNPs_25999 0 0 1 2 2 FCF1 chr14:75190047 5'GT 75190047 Upstream 3bp
chr19 8321909 8321909 1 + G A LIHC 8321902 + 8321882 8321922 41 CCTTCTCCTACAGTGCCAACCTGCTGCGCATTGGCTCTCTG CCTTCTCCTACAGTGCCAACCTGCTGCACATTGGCTCTCTG < 41bp 1 0.445347831291288 1 0.424281984567642 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS4 ENSG00000090661 CDS Human protein_coding chr19:8321902 chr19:8321909 nonsynonymous SNV 0.988 3 28 hm5C_associated_SNPs_26001 0 0 0 0 2 CERS4 chr19:8321833 3'AG 8321833 Downstream 77bp
chr19 8321909 8321909 1 + G A LIHC 8321902 + 8321882 8321922 41 CCTTCTCCTACAGTGCCAACCTGCTGCGCATTGGCTCTCTG CCTTCTCCTACAGTGCCAACCTGCTGCACATTGGCTCTCTG < 41bp 1 0.445347831291288 1 0.424281984567642 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS4 ENSG00000090661 CDS Human protein_coding chr19:8321902 chr19:8321909 nonsynonymous SNV 0.988 3 28 hm5C_associated_SNPs_26001 0 0 0 0 2 CERS4 chr19:8321961 5'GT 8321961 Upstream 53bp
chr17 70119055 70119055 1 + C T LIHC 70119073 + 70119053 70119093 41 GCCGACTCGCCACACTCCTCCTCCGGCATGAGCGAGGTGCA GCTGACTCGCCACACTCCTCCTCCGGCATGAGCGAGGTGCA < 41bp 1 0.663809065037093 1 0.798397421836853 experiment 0.672381869925815 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SOX9 ENSG00000125398 CDS Human protein_coding chr17:70119073 chr17:70119055 synonymous SNV . 0 3 hm5C_associated_SNPs_26003 0 0 1 0 1 SOX9 chr17:70119113 5'GT 70119113 Upstream 59bp
chr2 11300640 11300640 1 + G C LIHC 11300656 + 11300636 11300676 41 CGCTGACCTACCTGGAGTACCCCATCCTCATCGCGCAAGGT CGCTCACCTACCTGGAGTACCCCATCCTCATCGCGCAAGGT < 41bp 1 0.162712788654952 1 0.219079583883286 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11300656 chr2:11300640 synonymous SNV . 0 5 hm5C_associated_SNPs_26005 0 0 1 0 2 PQLC3 chr2:11300592 3'AG 11300592 Downstream 49bp
chr2 11300640 11300640 1 + G C LIHC 11300656 + 11300636 11300676 41 CGCTGACCTACCTGGAGTACCCCATCCTCATCGCGCAAGGT CGCTCACCTACCTGGAGTACCCCATCCTCATCGCGCAAGGT < 41bp 1 0.162712788654952 1 0.219079583883286 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11300656 chr2:11300640 synonymous SNV . 0 5 hm5C_associated_SNPs_26005 0 0 1 0 2 PQLC3 chr2:11300674 5'GT 11300674 Upstream 35bp
chr2 220503556 220503556 1 + C A LIHC 220503571 + 220503551 220503591 41 CTCGTCCTCATCCTGATCTTCATGGAGACACAGATCACGGC CTCGTACTCATCCTGATCTTCATGGAGACACAGATCACGGC < 41bp 1 0.406066064974948 1 0.703495264053345 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220503571 chr2:220503556 synonymous SNV . 0 6 hm5C_associated_SNPs_26006 0 0 0 0 1 SLC4A3 chr2:220503591 5'GT 220503591 Upstream 36bp
chrX 153035892 153035892 1 + C A LIHC 153035874 + 153035854 153035894 41 CTCCTTTTATGACTGCAGTGCCGTCCAGGCCTTGGAGGCGG CTCCTTTTATGACTGCAGTGCCGTCCAGGCCTTGGAGGAGG < 41bp 1 0.0246440344247023 1 0.0782715678215027 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153035874 chrX:153035892 nonsynonymous SNV 0.717 0 39 hm5C_associated_SNPs_26011 0 0 0 0 2 PLXNB3 chrX:153035793 3'AG 153035793 Downstream 100bp
chrX 153035892 153035892 1 + C A LIHC 153035874 + 153035854 153035894 41 CTCCTTTTATGACTGCAGTGCCGTCCAGGCCTTGGAGGCGG CTCCTTTTATGACTGCAGTGCCGTCCAGGCCTTGGAGGAGG < 41bp 1 0.0246440344247023 1 0.0782715678215027 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153035874 chrX:153035892 nonsynonymous SNV 0.717 0 39 hm5C_associated_SNPs_26011 0 0 0 0 2 PLXNB3 chrX:153035901 5'GT 153035901 Upstream 10bp
chr14 64914955 64914955 1 + A G LIHC 64914938 + 64914918 64914958 41 CACTGTTGTTTTTACAGAACCTGGAGCTGGTTGAAAAAGGC CACTGTTGTTTTTACAGAACCTGGAGCTGGTTGAAAAGGGC < 41bp 1 0.560747553498434 1 0.536152720451355 experiment 0.878504893003133 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64914938 chr14:64914955 synonymous SNV . 0 38 hm5C_associated_SNPs_26012 0 0 1 0 2 MTHFD1 chr14:64914935 3'AG 64914935 Downstream 21bp
chr14 64914955 64914955 1 + A G LIHC 64914938 + 64914918 64914958 41 CACTGTTGTTTTTACAGAACCTGGAGCTGGTTGAAAAAGGC CACTGTTGTTTTTACAGAACCTGGAGCTGGTTGAAAAGGGC < 41bp 1 0.560747553498434 1 0.536152720451355 experiment 0.878504893003133 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64914938 chr14:64914955 synonymous SNV . 0 38 hm5C_associated_SNPs_26012 0 0 1 0 2 MTHFD1 chr14:64915035 5'GT 64915035 Upstream 81bp
chr5 156816275 156816275 1 + C T LIHC 156816259 + 156816239 156816279 41 CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTGAC CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCTTGAC < 41bp 1 0.265392552219698 1 0.395585149526596 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816259 chr5:156816275 synonymous SNV . 0 37 hm5C_associated_SNPs_26013 0 0 1 0 1 CYFIP2 chr5:156816197 3'AG 156816197 Downstream 79bp
chr7 142458511 142458511 1 + G T LIHC 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGTTG < 41bp 1 0.798924419369359 1 0.638371050357819 experiment 0.402151161261282 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458511 nonsynonymous SNV 0.013 5 39 hm5C_associated_SNPs_26015 1 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 32bp
chr7 142458511 142458511 1 + G T LIHC 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGTTG < 41bp 1 0.798924419369359 1 0.638371050357819 experiment 0.402151161261282 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458511 nonsynonymous SNV 0.013 5 39 hm5C_associated_SNPs_26015 1 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 55bp
chr7 142458511 142458511 1 + G T LIHC 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGTTGGCTC < 41bp 1 0.0740302532020083 1 0.0325438976287842 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458511 nonsynonymous SNV 0.013 5 35 hm5C_associated_SNPs_26016 1 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 32bp
chr7 142458511 142458511 1 + G T LIHC 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGTTGGCTC < 41bp 1 0.0740302532020083 1 0.0325438976287842 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458511 nonsynonymous SNV 0.013 5 35 hm5C_associated_SNPs_26016 1 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 55bp
chr7 142458511 142458511 1 + G T LIHC 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTGGCTACCACTTCTGTGTTGGCTCCCT < 41bp 1 0.0737463605066061 1 0.0945606231689453 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458511 nonsynonymous SNV 0.013 5 32 hm5C_associated_SNPs_26017 1 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 32bp
chr7 142458511 142458511 1 + G T LIHC 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTGGCTACCACTTCTGTGTTGGCTCCCT < 41bp 1 0.0737463605066061 1 0.0945606231689453 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458511 nonsynonymous SNV 0.013 5 32 hm5C_associated_SNPs_26017 1 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 55bp
chr7 142458511 142458511 1 + G T LIHC 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGGCTACCACTTCTGTGTTGGCTCCCTC < 41bp 1 0.178383702023722 1 0.269904494285583 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458511 nonsynonymous SNV 0.013 5 31 hm5C_associated_SNPs_26018 1 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 32bp
chr7 142458511 142458511 1 + G T LIHC 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGGCTACCACTTCTGTGTTGGCTCCCTC < 41bp 1 0.178383702023722 1 0.269904494285583 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458511 nonsynonymous SNV 0.013 5 31 hm5C_associated_SNPs_26018 1 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 55bp
chr7 142458511 142458511 1 + G T LIHC 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGCTACCACTTCTGTGTTGGCTCCCTCAT < 41bp 1 0.306282309378706 1 0.316977828741074 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458511 nonsynonymous SNV 0.013 5 29 hm5C_associated_SNPs_26019 1 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 32bp
chr7 142458511 142458511 1 + G T LIHC 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGCTACCACTTCTGTGTTGGCTCCCTCAT < 41bp 1 0.306282309378706 1 0.316977828741074 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458511 nonsynonymous SNV 0.013 5 29 hm5C_associated_SNPs_26019 1 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 55bp
chr7 142458511 142458511 1 + G T LIHC 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGGCTACCACTTCTGTGTTGGCTCCCTCATCAA < 41bp 1 0.576352145564096 1 0.122177720069885 experiment 0.847295708871807 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458511 nonsynonymous SNV 0.013 5 26 hm5C_associated_SNPs_26020 1 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 32bp
chr7 142458511 142458511 1 + G T LIHC 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGGCTACCACTTCTGTGTTGGCTCCCTCATCAA < 41bp 1 0.576352145564096 1 0.122177720069885 experiment 0.847295708871807 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458511 nonsynonymous SNV 0.013 5 26 hm5C_associated_SNPs_26020 1 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 55bp
chr7 142458511 142458511 1 + G T LIHC 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGTGTTGGCTCCCTCATCAACGAACAGTG < 41bp 1 0.324371108975394 1 0.0832276940345764 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458511 nonsynonymous SNV 0.013 5 17 hm5C_associated_SNPs_26021 1 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 32bp
chr7 142458511 142458511 1 + G T LIHC 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGTGTTGGCTCCCTCATCAACGAACAGTG < 41bp 1 0.324371108975394 1 0.0832276940345764 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458511 nonsynonymous SNV 0.013 5 17 hm5C_associated_SNPs_26021 1 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 55bp
chr7 142458511 142458511 1 + G T LIHC 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGTTGGCTCCCTCATCAACGAACAGTGGG < 41bp 1 0.0847178915732525 1 0.0338574349880219 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458511 nonsynonymous SNV 0.013 5 15 hm5C_associated_SNPs_26022 1 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 32bp
chr7 142458511 142458511 1 + G T LIHC 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGTTGGCTCCCTCATCAACGAACAGTGGG < 41bp 1 0.0847178915732525 1 0.0338574349880219 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458511 nonsynonymous SNV 0.013 5 15 hm5C_associated_SNPs_26022 1 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 55bp
chr7 142458511 142458511 1 + G T LIHC 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGTTGGCTCCCTCATCAACGAACAGTGGGT < 41bp 1 0.122035389770522 1 0.0499318838119507 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458511 nonsynonymous SNV 0.013 5 14 hm5C_associated_SNPs_26023 1 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 32bp
chr7 142458511 142458511 1 + G T LIHC 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGTTGGCTCCCTCATCAACGAACAGTGGGT < 41bp 1 0.122035389770522 1 0.0499318838119507 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458511 nonsynonymous SNV 0.013 5 14 hm5C_associated_SNPs_26023 1 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 55bp
chr7 142458511 142458511 1 + G T LIHC 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGTTGGCTCCCTCATCAACGAACAGTGGGTG < 41bp 1 0.325936030844151 1 0.138920366764069 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458511 nonsynonymous SNV 0.013 5 13 hm5C_associated_SNPs_26024 1 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 32bp
chr7 142458511 142458511 1 + G T LIHC 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGTTGGCTCCCTCATCAACGAACAGTGGGTG < 41bp 1 0.325936030844151 1 0.138920366764069 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458511 nonsynonymous SNV 0.013 5 13 hm5C_associated_SNPs_26024 1 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 55bp
chr7 142458511 142458511 1 + G T LIHC 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGTTGGCTCCCTCATCAACGAACAGTGGGTGGT < 41bp 1 0.453226006303722 1 0.675046443939209 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458511 nonsynonymous SNV 0.013 5 11 hm5C_associated_SNPs_26025 1 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 32bp
chr7 142458511 142458511 1 + G T LIHC 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGTTGGCTCCCTCATCAACGAACAGTGGGTGGT < 41bp 1 0.453226006303722 1 0.675046443939209 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458511 nonsynonymous SNV 0.013 5 11 hm5C_associated_SNPs_26025 1 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 55bp
chr7 142458511 142458511 1 + G T LIHC 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGTTGGCTCCCTCATCAACGAACAGTGGGTGGTATC < 41bp 1 0.672342011214285 1 0.50632256269455 experiment 0.655315977571431 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458511 nonsynonymous SNV 0.013 5 8 hm5C_associated_SNPs_26026 1 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 32bp
chr7 142458511 142458511 1 + G T LIHC 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGTTGGCTCCCTCATCAACGAACAGTGGGTGGTATC < 41bp 1 0.672342011214285 1 0.50632256269455 experiment 0.655315977571431 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458511 nonsynonymous SNV 0.013 5 8 hm5C_associated_SNPs_26026 1 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 55bp
chr7 142458511 142458511 1 + G T LIHC 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGTTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC < 41bp 1 0.354280748239536 1 0.436285853385925 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458511 nonsynonymous SNV 0.013 5 5 hm5C_associated_SNPs_26027 1 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 32bp
chr7 142458511 142458511 1 + G T LIHC 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGTTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC < 41bp 1 0.354280748239536 1 0.436285853385925 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458511 nonsynonymous SNV 0.013 5 5 hm5C_associated_SNPs_26027 1 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 55bp
chr7 142458511 142458511 1 + G T LIHC 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC TTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC < 41bp 1 0.449965835771491 1 0.259411334991455 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458511 nonsynonymous SNV 0.013 5 1 hm5C_associated_SNPs_26028 1 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 32bp
chr7 142458511 142458511 1 + G T LIHC 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC TTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC < 41bp 1 0.449965835771491 1 0.259411334991455 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458511 nonsynonymous SNV 0.013 5 1 hm5C_associated_SNPs_26028 1 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 55bp
chr7 2406209 2406209 1 + A C LIHC 2406225 + 2406205 2406245 41 GCTTAGCATCTATGAAACTCCTGTAAGTGGCCTCAGTGATG GCTTCGCATCTATGAAACTCCTGTAAGTGGCCTCAGTGATG < 41bp 1 0.473738594234687 1 0.0882507562637329 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2406225 chr7:2406209 nonsynonymous SNV 0.997 4 5 hm5C_associated_SNPs_26033 0 0 1 0 2 EIF3B chr7:2406160 3'AG 2406160 Downstream 50bp
chr7 2406209 2406209 1 + A C LIHC 2406225 + 2406205 2406245 41 GCTTAGCATCTATGAAACTCCTGTAAGTGGCCTCAGTGATG GCTTCGCATCTATGAAACTCCTGTAAGTGGCCTCAGTGATG < 41bp 1 0.473738594234687 1 0.0882507562637329 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2406225 chr7:2406209 nonsynonymous SNV 0.997 4 5 hm5C_associated_SNPs_26033 0 0 1 0 2 EIF3B chr7:2406226 5'GT 2406226 Upstream 18bp
chr1 22336295 22336295 1 + T C LIHC 22336277 + 22336257 22336297 41 TGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCT TGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCACCT < 41bp 1 0.0527364476206618 1 0.0181249976158142 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336277 chr1:22336295 nonsynonymous SNV 0.004 1 39 hm5C_associated_SNPs_26034 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 56bp
chr1 22336295 22336295 1 + T C LIHC 22336278 + 22336258 22336298 41 GTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCTG GTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCACCTG < 41bp 1 0.357659976597624 1 0.0747554302215576 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336278 chr1:22336295 nonsynonymous SNV 0.004 1 38 hm5C_associated_SNPs_26035 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 56bp
chr1 22336295 22336295 1 + T C LIHC 22336284 + 22336264 22336304 41 AGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCC AGCTTTGTTTCTGCCTTTGGCTGCAACTTCACCTGGAAGCC < 41bp 1 0.776947555063963 1 0.602733433246613 experiment 0.446104889872074 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336284 chr1:22336295 nonsynonymous SNV 0.004 1 32 hm5C_associated_SNPs_26036 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 56bp
chr1 22336295 22336295 1 + T C LIHC 22336287 + 22336267 22336307 41 TTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCAC TTTGTTTCTGCCTTTGGCTGCAACTTCACCTGGAAGCCCAC < 41bp 1 0.23222394435883 1 0.09677854180336 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336287 chr1:22336295 nonsynonymous SNV 0.004 1 29 hm5C_associated_SNPs_26037 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 56bp
chr1 22336295 22336295 1 + T C LIHC 22336290 + 22336270 22336310 41 GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT GTTTCTGCCTTTGGCTGCAACTTCACCTGGAAGCCCACGGT < 41bp 1 0.513718205634294 1 0.795022964477539 experiment 0.972563588731411 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336290 chr1:22336295 nonsynonymous SNV 0.004 1 26 hm5C_associated_SNPs_26038 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 56bp
chr1 22336295 22336295 1 + T C LIHC 22336293 + 22336273 22336313 41 TCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGTGTT TCTGCCTTTGGCTGCAACTTCACCTGGAAGCCCACGGTGTT < 41bp 1 0.581414191994404 1 0.436525017023087 experiment 0.837171616011193 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336293 chr1:22336295 nonsynonymous SNV 0.004 1 23 hm5C_associated_SNPs_26039 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 56bp
chr1 22336295 22336295 1 + T C LIHC 22336303 + 22336283 22336323 41 GCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTC GCTGCAACTTCACCTGGAAGCCCACGGTGTTCACTCGAGTC < 41bp 1 0.195392583361045 1 0.241387546062469 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336303 chr1:22336295 nonsynonymous SNV 0.004 1 13 hm5C_associated_SNPs_26040 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 56bp
chr1 22336295 22336295 1 + T C LIHC 22336304 + 22336284 22336324 41 CTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCT CTGCAACTTCACCTGGAAGCCCACGGTGTTCACTCGAGTCT < 41bp 1 0.356320515871221 1 0.209578961133957 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336304 chr1:22336295 nonsynonymous SNV 0.004 1 12 hm5C_associated_SNPs_26041 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 56bp
chr1 22336295 22336295 1 + T C LIHC 22336305 + 22336285 22336325 41 TGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTC TGCAACTTCACCTGGAAGCCCACGGTGTTCACTCGAGTCTC < 41bp 1 0.778040255749434 1 0.369846284389496 experiment 0.443919488501132 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336305 chr1:22336295 nonsynonymous SNV 0.004 1 11 hm5C_associated_SNPs_26042 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 56bp
chr1 22336295 22336295 1 + T C LIHC 22336307 + 22336287 22336327 41 CAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCG CAACTTCACCTGGAAGCCCACGGTGTTCACTCGAGTCTCCG < 41bp 1 0.419974294673769 1 0.256019443273544 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336307 chr1:22336295 nonsynonymous SNV 0.004 1 9 hm5C_associated_SNPs_26043 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 56bp
chr1 22336295 22336295 1 + T C LIHC 22336314 + 22336294 22336334 41 ATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCAT ACCTGGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCAT < 41bp 1 0.38540360596212 1 0.0139630734920502 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336314 chr1:22336295 nonsynonymous SNV 0.004 1 2 hm5C_associated_SNPs_26044 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 56bp
chr17 6920313 6920313 1 + A C LIHC 6920326 + 6920306 6920346 41 CCAGCTAAGAAACTCAACTTCGACCAGGGTAGGAGTCCTCC CCAGCTACGAAACTCAACTTCGACCAGGGTAGGAGTCCTCC < 41bp 1 0.279725719552511 1 0.0595179796218872 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control C17orf49 ENSG00000161939;ENSG00000258315 CDS Human other chr17:6920326 chr17:6920313 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_26045 0 0 0 0 1 C17orf49 chr17:6920229 3'AG 6920229 Downstream 85bp
chr11 58347078 58347078 1 + G A LIHC 58347094 + 58347074 58347114 41 GCAAGAAGAGTCCGCGACTCCTGTGAGTAACAGTCTTTCAG GCAAAAAGAGTCCGCGACTCCTGTGAGTAACAGTCTTTCAG < 41bp 1 0.697695365015781 1 0.145689100027084 experiment 0.604609269968438 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58347094 chr11:58347078 synonymous SNV . 0 5 hm5C_associated_SNPs_26046 0 0 1 0 1 ZFP91 chr11:58347095 5'GT 58347095 Upstream 18bp
chr22 24583365 24583365 1 + G T LIHC 24583360 + 24583340 24583380 41 GACGACTTCACCCTGCACAGCGGGCGCGTCCTGCCCCCAGG GACGACTTCACCCTGCACAGCGGGCTCGTCCTGCCCCCAGG < 41bp 1 0.582156707247543 1 0.550327181816101 experiment 0.835686585504914 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24583360 chr22:24583365 nonsynonymous SNV 0.003 0 26 hm5C_associated_SNPs_26047 0 0 0 0 1 SUSD2 chr22:24583418 5'GT 24583418 Upstream 54bp
chr5 53815382 53815382 1 + G T LIHC 53815367 + 53815347 53815387 41 TAGCGCTGTATCAGGGGCATCTGGCTAACTTCCCGGACATC TAGCGCTGTATCAGGGGCATCTGGCTAACTTCCCGTACATC < 41bp 1 0.340657556242346 1 0.383301049470901 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SNX18 ENSG00000178996 CDS Human protein_coding chr5:53815367 chr5:53815382 nonsynonymous SNV 0.994 4 36 hm5C_associated_SNPs_26048 0 0 1 0 1 SNX18 chr5:53815403 5'GT 53815403 Upstream 22bp
chr12 112910827 112910827 1 + A G LIHC 112910843 + 112910823 112910863 41 AGATATAAAAACATCCTGCCCTGTAAGTATCAATATTCCGC AGATGTAAAAACATCCTGCCCTGTAAGTATCAATATTCCGC < 41bp 1 0.298870273480415 1 0.0473556518554688 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112910843 chr12:112910827 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_26049 6 0 0 0 2 PTPN11 chr12:112910748 3'AG 112910748 Downstream 80bp
chr12 112910827 112910827 1 + A G LIHC 112910843 + 112910823 112910863 41 AGATATAAAAACATCCTGCCCTGTAAGTATCAATATTCCGC AGATGTAAAAACATCCTGCCCTGTAAGTATCAATATTCCGC < 41bp 1 0.298870273480415 1 0.0473556518554688 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112910843 chr12:112910827 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_26049 6 0 0 0 2 PTPN11 chr12:112910844 5'GT 112910844 Upstream 18bp
chr17 73738729 73738729 1 + T A LIHC 73738719 + 73738699 73738739 41 AGCTGGTGGACGTACGGGTGCCCCTCTTTATCCGGCCTGAG AGCTGGTGGACGTACGGGTGCCCCTCTTTAACCGGCCTGAG < 41bp 1 0.148286413810755 1 0.0314697623252869 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73738719 chr17:73738729 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_26050 0 0 0 0 1 ITGB4 chr17:73738663 3'AG 73738663 Downstream 67bp
chr17 73738730 73738730 1 + C G LIHC 73738719 + 73738699 73738739 41 AGCTGGTGGACGTACGGGTGCCCCTCTTTATCCGGCCTGAG AGCTGGTGGACGTACGGGTGCCCCTCTTTATGCGGCCTGAG < 41bp 1 0.125540711995494 1 0.0225731730461121 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73738719 chr17:73738730 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_26051 0 0 0 0 1 ITGB4 chr17:73738663 3'AG 73738663 Downstream 68bp
chr15 90159653 90159653 1 + A T LIHC 90159641 + 90159621 90159661 41 GTGTTTACATTTTAGGTTATCACAAACTGCTGACTAAGAGT GTGTTTACATTTTAGGTTATCACAAACTGCTGTCTAAGAGT < 41bp 1 0.35266602582061 1 0.320526361465454 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TICRR ENSG00000140534 CDS Human protein_coding chr15:90159641 chr15:90159653 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_26054 0 0 1 0 2 TICRR chr15:90159636 3'AG 90159636 Downstream 18bp
chr15 90159653 90159653 1 + A T LIHC 90159641 + 90159621 90159661 41 GTGTTTACATTTTAGGTTATCACAAACTGCTGACTAAGAGT GTGTTTACATTTTAGGTTATCACAAACTGCTGTCTAAGAGT < 41bp 1 0.35266602582061 1 0.320526361465454 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TICRR ENSG00000140534 CDS Human protein_coding chr15:90159641 chr15:90159653 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_26054 0 0 1 0 2 TICRR chr15:90159726 5'GT 90159726 Upstream 74bp
chr15 90159653 90159653 1 + A T LIHC 90159672 + 90159652 90159692 41 GACTAAGAGTGTGGCCGAGACTCCAGTGCATAAGCAGATCT GTCTAAGAGTGTGGCCGAGACTCCAGTGCATAAGCAGATCT < 41bp 1 0.777870054659728 1 0.866289734840393 experiment 0.444259890680544 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TICRR ENSG00000140534 CDS Human protein_coding chr15:90159672 chr15:90159653 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_26055 0 0 1 0 2 TICRR chr15:90159636 3'AG 90159636 Downstream 18bp
chr15 90159653 90159653 1 + A T LIHC 90159672 + 90159652 90159692 41 GACTAAGAGTGTGGCCGAGACTCCAGTGCATAAGCAGATCT GTCTAAGAGTGTGGCCGAGACTCCAGTGCATAAGCAGATCT < 41bp 1 0.777870054659728 1 0.866289734840393 experiment 0.444259890680544 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TICRR ENSG00000140534 CDS Human protein_coding chr15:90159672 chr15:90159653 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_26055 0 0 1 0 2 TICRR chr15:90159726 5'GT 90159726 Upstream 74bp
chr1 161132173 161132173 1 + C T LIHC 161132159 + 161132139 161132179 41 AAGAGGTGCCTGGAGGAGGCCGAGCCCAAGAGCTCACTGAA AAGAGGTGCCTGGAGGAGGCCGAGCCCAAGAGCTTACTGAA < 41bp 1 0.434241509998672 1 0.739577114582062 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161132159 chr1:161132173 synonymous SNV . 0 35 hm5C_associated_SNPs_26056 0 0 1 0 1 USP21 chr1:161132180 5'GT 161132180 Upstream 8bp
chr7 142460286 142460286 1 + C T LIHC 142460282 + 142460262 142460302 41 TCTCTTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGC TCTCTTCCTGATCCTCACAGCCGATTACCCAGACGAGCTGC < 41bp 1 0.156840135179502 1 0.201170921325684 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460282 chr7:142460286 synonymous SNV . 0 25 hm5C_associated_SNPs_26057 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 5bp
chr7 142460286 142460286 1 + C T LIHC 142460283 + 142460263 142460303 41 CTCTTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGCA CTCTTCCTGATCCTCACAGCCGATTACCCAGACGAGCTGCA < 41bp 1 0.0849266471324314 1 0.0910077691078186 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460283 chr7:142460286 synonymous SNV . 0 24 hm5C_associated_SNPs_26058 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 5bp
chr7 142460286 142460286 1 + C T LIHC 142460289 + 142460269 142460309 41 CTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCT CTGATCCTCACAGCCGATTACCCAGACGAGCTGCAGTGCCT < 41bp 1 0.182333024657638 1 0.280490577220917 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460289 chr7:142460286 synonymous SNV . 0 18 hm5C_associated_SNPs_26059 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 5bp
chr7 142460286 142460286 1 + C T LIHC 142460290 + 142460270 142460310 41 TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTG TGATCCTCACAGCCGATTACCCAGACGAGCTGCAGTGCCTG < 41bp 1 0.475470031943087 1 0.277167230844498 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460290 chr7:142460286 synonymous SNV . 0 17 hm5C_associated_SNPs_26060 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 5bp
chr7 142460286 142460286 1 + C T LIHC 142460291 + 142460271 142460311 41 GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGG GATCCTCACAGCCGATTACCCAGACGAGCTGCAGTGCCTGG < 41bp 1 0.476460133541336 1 0.422100007534027 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460291 chr7:142460286 synonymous SNV . 0 16 hm5C_associated_SNPs_26061 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 5bp
chr7 142460286 142460286 1 + C T LIHC 142460295 + 142460275 142460315 41 CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGC CTCACAGCCGATTACCCAGACGAGCTGCAGTGCCTGGATGC < 41bp 1 0.345412881289912 1 0.311477541923523 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460295 chr7:142460286 synonymous SNV . 0 12 hm5C_associated_SNPs_26062 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 5bp
chr7 142460286 142460286 1 + C T LIHC 142460299 + 142460279 142460319 41 CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT CAGCCGATTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT < 41bp 1 0.693299365665844 1 0.148254662752151 experiment 0.613401268668311 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460299 chr7:142460286 synonymous SNV . 0 8 hm5C_associated_SNPs_26063 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 5bp
chr7 142460286 142460286 1 + C T LIHC 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGATTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG < 41bp 1 0.266646064772683 1 0.186580866575241 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460286 synonymous SNV . 0 5 hm5C_associated_SNPs_26064 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 5bp
chrX 135106598 135106598 1 + A G LIHC 135106613 + 135106593 135106633 41 TGGGTATTTGGTGGTGGCACCACTGCAATGCTGTCATGCTT TGGGTGTTTGGTGGTGGCACCACTGCAATGCTGTCATGCTT < 41bp 1 0.314828596216016 1 0.539479494094849 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135106613 chrX:135106598 synonymous SNV . 0 6 hm5C_associated_SNPs_26065 0 0 1 0 1 SLC9A6 chrX:135106642 5'GT 135106642 Upstream 45bp
chr1 201837827 201837827 1 + T C LIHC 201837817 + 201837797 201837837 41 CTCAGGACATCTTCAAGGAGCTGTCCCAGATTGAAGCCTGT CTCAGGACATCTTCAAGGAGCTGTCCCAGACTGAAGCCTGT < 41bp 1 0.0403156426756033 1 0.0650431513786316 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IPO9 ENSG00000198700 CDS Human protein_coding chr1:201837817 chr1:201837827 nonsynonymous SNV 1.000 0 31 hm5C_associated_SNPs_26066 0 0 1 0 2 IPO9 chr1:201837776 3'AG 201837776 Downstream 52bp
chr1 201837827 201837827 1 + T C LIHC 201837817 + 201837797 201837837 41 CTCAGGACATCTTCAAGGAGCTGTCCCAGATTGAAGCCTGT CTCAGGACATCTTCAAGGAGCTGTCCCAGACTGAAGCCTGT < 41bp 1 0.0403156426756033 1 0.0650431513786316 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IPO9 ENSG00000198700 CDS Human protein_coding chr1:201837817 chr1:201837827 nonsynonymous SNV 1.000 0 31 hm5C_associated_SNPs_26066 0 0 1 0 2 IPO9 chr1:201837924 5'GT 201837924 Upstream 98bp
chr10 118314762 118314762 1 + T C LIHC 118314745 + 118314725 118314765 41 CCTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGT CCTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATCTGT < 41bp 1 0.56378481344543 1 0.0869346261024475 experiment 0.872430373109141 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314745 chr10:118314762 nonsynonymous SNV 0.997 5 38 hm5C_associated_SNPs_26067 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 48bp
chr10 118314762 118314762 1 + T C LIHC 118314746 + 118314726 118314766 41 CTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTG CTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATCTGTG < 41bp 1 0.17461044336519 1 0.113089114427567 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314746 chr10:118314762 nonsynonymous SNV 0.997 5 37 hm5C_associated_SNPs_26068 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 48bp
chr10 118314762 118314762 1 + T C LIHC 118314747 + 118314727 118314767 41 TGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGG TGAATTAGTCCGATTGGACCCCAGCGATGCCAAATCTGTGG < 41bp 1 0.363694445195374 1 0.237764358520508 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314747 chr10:118314762 nonsynonymous SNV 0.997 5 36 hm5C_associated_SNPs_26069 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 48bp
chr10 118314762 118314762 1 + T C LIHC 118314748 + 118314728 118314768 41 GAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGA GAATTAGTCCGATTGGACCCCAGCGATGCCAAATCTGTGGA < 41bp 1 0.715145837304747 1 0.361215949058533 experiment 0.569708325390506 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314748 chr10:118314762 nonsynonymous SNV 0.997 5 35 hm5C_associated_SNPs_26070 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 48bp
chr10 118314762 118314762 1 + T C LIHC 118314751 + 118314731 118314771 41 TTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGATGT TTAGTCCGATTGGACCCCAGCGATGCCAAATCTGTGGATGT < 41bp 1 0.283176493709295 1 0.10272091627121 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314751 chr10:118314762 nonsynonymous SNV 0.997 5 32 hm5C_associated_SNPs_26071 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 48bp
chr10 118314762 118314762 1 + T C LIHC 118314756 + 118314736 118314776 41 CCGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTC CCGATTGGACCCCAGCGATGCCAAATCTGTGGATGTAATTC < 41bp 1 0.284860528540056 1 0.0249900817871094 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314756 chr10:118314762 nonsynonymous SNV 0.997 5 27 hm5C_associated_SNPs_26072 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 48bp
chr10 118314762 118314762 1 + T C LIHC 118314757 + 118314737 118314777 41 CGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTCA CGATTGGACCCCAGCGATGCCAAATCTGTGGATGTAATTCA < 41bp 1 0.329982091124466 1 0.240802854299545 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314757 chr10:118314762 nonsynonymous SNV 0.997 5 26 hm5C_associated_SNPs_26073 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 48bp
chr10 118314762 118314762 1 + T C LIHC 118314776 + 118314756 118314796 41 CCAAATTTGTGGATGTAATTCACACGGATGGTGCCCCCATA CCAAATCTGTGGATGTAATTCACACGGATGGTGCCCCCATA < 41bp 1 0.660474794957931 1 0.138663679361343 experiment 0.679050410084139 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314776 chr10:118314762 nonsynonymous SNV 0.997 5 7 hm5C_associated_SNPs_26074 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 48bp
chr10 118314762 118314762 1 + T C LIHC 118314780 + 118314760 118314800 41 ATTTGTGGATGTAATTCACACGGATGGTGCCCCCATAGTCC ATCTGTGGATGTAATTCACACGGATGGTGCCCCCATAGTCC < 41bp 1 0.649088656138665 1 0.302145302295685 experiment 0.70182268772267 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314780 chr10:118314762 nonsynonymous SNV 0.997 5 3 hm5C_associated_SNPs_26075 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 48bp
chr19 39664257 39664257 1 + G T LIHC 39664261 + 39664241 39664281 41 ACGGGCCATCAGCGGGGGGCCTGGCCATCCCCCAGTCCTCC ACGGGCCATCAGCGGGTGGCCTGGCCATCCCCCAGTCCTCC < 41bp 1 0.588549507674823 1 0.0352093875408173 experiment 0.822900984650355 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAK4 ENSG00000130669 CDS Human protein_coding chr19:39664261 chr19:39664257 synonymous SNV . 0 17 hm5C_associated_SNPs_26076 0 0 1 0 1 PAK4 chr19:39664216 3'AG 39664216 Downstream 42bp
chr17 7254302 7254302 1 + G A LIHC 7254301 + 7254281 7254321 41 AAAGATGAGGGAGGCTGAAGCGGCCCAGGGGCAGGCAGGTA AAAGATGAGGGAGGCTGAAGCAGCCCAGGGGCAGGCAGGTA < 41bp 1 0.488604052984175 1 0.575206100940704 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACAP1 ENSG00000072818 CDS Human protein_coding chr17:7254301 chr17:7254302 synonymous SNV . 0 22 hm5C_associated_SNPs_26078 0 0 0 0 2 ACAP1 chr17:7254269 3'AG 7254269 Downstream 34bp
chr17 7254302 7254302 1 + G A LIHC 7254301 + 7254281 7254321 41 AAAGATGAGGGAGGCTGAAGCGGCCCAGGGGCAGGCAGGTA AAAGATGAGGGAGGCTGAAGCAGCCCAGGGGCAGGCAGGTA < 41bp 1 0.488604052984175 1 0.575206100940704 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACAP1 ENSG00000072818 CDS Human protein_coding chr17:7254301 chr17:7254302 synonymous SNV . 0 22 hm5C_associated_SNPs_26078 0 0 0 0 2 ACAP1 chr17:7254318 5'GT 7254318 Upstream 17bp
chr22 39125539 39125539 1 + G T LIHC 39125541 + 39125521 39125561 41 ATGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGA ATGCAGTCGACGAAAAAGTGCCCCCTGACGAAACGAGACGA < 41bp 1 0.0560374966990693 1 0.143999516963959 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125541 chr22:39125539 nonsynonymous SNV 0.910 2 19 hm5C_associated_SNPs_26079 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 73bp
chr22 39125539 39125539 1 + G T LIHC 39125542 + 39125522 39125562 41 TGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAG TGCAGTCGACGAAAAAGTGCCCCCTGACGAAACGAGACGAG < 41bp 1 0.0816328330150366 1 0.256633400917053 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125542 chr22:39125539 nonsynonymous SNV 0.910 2 18 hm5C_associated_SNPs_26080 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 73bp
chr22 39125539 39125539 1 + G T LIHC 39125543 + 39125523 39125563 41 GCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGG GCAGTCGACGAAAAAGTGCCCCCTGACGAAACGAGACGAGG < 41bp 1 0.0382660264635795 1 0.213740795850754 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125543 chr22:39125539 nonsynonymous SNV 0.910 2 17 hm5C_associated_SNPs_26081 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 73bp
chr22 39125539 39125539 1 + G T LIHC 39125544 + 39125524 39125564 41 CAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGG CAGTCGACGAAAAAGTGCCCCCTGACGAAACGAGACGAGGG < 41bp 1 0.0839073347914798 1 0.218907356262207 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125544 chr22:39125539 nonsynonymous SNV 0.910 2 16 hm5C_associated_SNPs_26082 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 73bp
chr22 39125539 39125539 1 + G T LIHC 39125545 + 39125525 39125565 41 AGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGGG AGTCGACGAAAAAGTGCCCCCTGACGAAACGAGACGAGGGG < 41bp 1 0.162936218061795 1 0.370034247636795 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125545 chr22:39125539 nonsynonymous SNV 0.910 2 15 hm5C_associated_SNPs_26083 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 73bp
chr17 28754464 28754464 1 + A G LIHC 28754477 + 28754457 28754497 41 TGAACCGAAATTTCCCAGACCAGTTTGTTCAGATCACAGAT TGAACCGGAATTTCCCAGACCAGTTTGTTCAGATCACAGAT < 41bp 1 0.121184066141527 1 0.0616860091686249 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28754477 chr17:28754464 synonymous SNV . 0 8 hm5C_associated_SNPs_26084 0 0 0 0 1 CPD chr17:28754409 3'AG 28754409 Downstream 56bp
chr4 2965787 2965787 1 + G T LIHC 2965776 + 2965756 2965796 41 CCTCGGTCTCGCAGAATCCGCCGGCGGCGGCGGCGCCAGGA CCTCGGTCTCGCAGAATCCGCCGGCGGCGGCTGCGCCAGGA < 41bp 1 0.698613789756884 1 0.756547689437866 experiment 0.602772420486232 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRK4 ENSG00000125388 CDS Human protein_coding chr4:2965776 chr4:2965787 synonymous SNV . 0 32 hm5C_associated_SNPs_26085 0 0 0 0 1 GRK4 chr4:2965849 5'GT 2965849 Upstream 63bp
chr12 57910031 57910031 1 + A C LIHC 57910022 + 57910002 57910042 41 CTGGTGATAACTTTGTTGTTCTCCAGGCAAAAACGTCCCCG CTGGTGATAACTTTGTTGTTCTCCAGGCACAAACGTCCCCG < 41bp 1 0.450144915141568 1 0.819933533668518 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MARS ENSG00000166986 CDS Human protein_coding chr12:57910022 chr12:57910031 nonsynonymous SNV 0.006 1 30 hm5C_associated_SNPs_26086 0 0 1 1 2 MARS chr12:57910028 3'AG 57910028 Downstream 4bp
chr12 57910031 57910031 1 + A C LIHC 57910022 + 57910002 57910042 41 CTGGTGATAACTTTGTTGTTCTCCAGGCAAAAACGTCCCCG CTGGTGATAACTTTGTTGTTCTCCAGGCACAAACGTCCCCG < 41bp 1 0.450144915141568 1 0.819933533668518 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MARS ENSG00000166986 CDS Human protein_coding chr12:57910022 chr12:57910031 nonsynonymous SNV 0.006 1 30 hm5C_associated_SNPs_26086 0 0 1 1 2 MARS chr12:57910120 5'GT 57910120 Upstream 90bp
chr17 79663472 79663472 1 + G T LIHC 79663489 + 79663469 79663509 41 GGAGAAGCTTCGCCGGGCAGCCGAGGAGGCAGAGCGCCAGC GGATAAGCTTCGCCGGGCAGCCGAGGAGGCAGAGCGCCAGC < 41bp 1 0.65933827780395 1 0.759946823120117 experiment 0.681323444392101 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79663489 chr17:79663472 nonsynonymous SNV 0.994 0 4 hm5C_associated_SNPs_26087 0 0 1 0 1 HGS chr17:79663559 5'GT 79663559 Upstream 88bp
chr7 69583171 69583171 1 + A T LIHC 69583186 + 69583166 69583206 41 AGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA AGTGGTGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA < 41bp 1 0.110460550570387 1 0.262025356292725 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69583186 chr7:69583171 synonymous SNV . 0 6 hm5C_associated_SNPs_26088 0 0 0 0 2 AUTS2 chr7:69583118 3'AG 69583118 Downstream 54bp
chr7 69583171 69583171 1 + A T LIHC 69583186 + 69583166 69583206 41 AGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA AGTGGTGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA < 41bp 1 0.110460550570387 1 0.262025356292725 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69583186 chr7:69583171 synonymous SNV . 0 6 hm5C_associated_SNPs_26088 0 0 0 0 2 AUTS2 chr7:69583219 5'GT 69583219 Upstream 49bp
chr16 29848051 29848051 1 + G C LIHC 29848064 + 29848044 29848084 41 CAGCCCTGCACCTCCGGGCTCGGCGGAACTTCCGGGACTTC CAGCCCTCCACCTCCGGGCTCGGCGGAACTTCCGGGACTTC < 41bp 1 0.635696644833211 1 0.594521522521973 experiment 0.728606710333579 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29848064 chr16:29848051 nonsynonymous SNV . 0 8 hm5C_associated_SNPs_26089 0 0 1 0 1 MVP chr16:29848043 3'AG 29848043 Downstream 9bp
chr16 88781068 88781068 1 + G C LIHC 88781052 + 88781032 88781072 41 TCTCTCCCAGATGCAGTCACCCATCCCCCTGACTGAGACCC TCTCTCCCAGATGCAGTCACCCATCCCCCTGACTGACACCC < 41bp 1 0.0502080218790004 1 0.163143306970596 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781052 chr16:88781068 nonsynonymous SNV 0.010 0 37 hm5C_associated_SNPs_26091 0 0 1 0 2 CTU2 chr16:88780995 3'AG 88780995 Downstream 74bp
chr16 88781068 88781068 1 + G C LIHC 88781052 + 88781032 88781072 41 TCTCTCCCAGATGCAGTCACCCATCCCCCTGACTGAGACCC TCTCTCCCAGATGCAGTCACCCATCCCCCTGACTGACACCC < 41bp 1 0.0502080218790004 1 0.163143306970596 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781052 chr16:88781068 nonsynonymous SNV 0.010 0 37 hm5C_associated_SNPs_26091 0 0 1 0 2 CTU2 chr16:88781145 5'GT 88781145 Upstream 78bp
chr1 10221232 10221232 1 + T C LIHC 10221247 + 10221227 10221267 41 AAACATGTTGATAAACGACACGACGTTTTTGCTCGATGAAA AAACACGTTGATAAACGACACGACGTTTTTGCTCGATGAAA < 41bp 1 0.31049730952127 1 0.0688953101634979 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10221247 chr1:10221232 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_26092 0 0 0 0 1 UBE4B chr1:10221200 3'AG 10221200 Downstream 33bp
chr1 171759656 171759656 1 + A T LIHC 171759671 + 171759651 171759691 41 CCTGCAGCCCCGGGGCAGTCCATTGATAAGAGTTACCTGTG CCTGCTGCCCCGGGGCAGTCCATTGATAAGAGTTACCTGTG < 41bp 1 0.303781696328138 1 0.0399663746356964 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171759671 chr1:171759656 synonymous SNV . 0 6 hm5C_associated_SNPs_26093 0 0 0 0 1 METTL13 chr1:171759592 3'AG 171759592 Downstream 65bp
chr1 198233311 198233311 1 + A G LIHC 198233296 + 198233276 198233316 41 ATAAAATATTATGCATCATTCATTGAAGATAATGAACTAAA ATAAAATATTATGCATCATTCATTGAAGATAATGAGCTAAA < 41bp 1 0.127214616039028 1 0.380498349666595 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233296 chr1:198233311 synonymous SNV . 0 36 hm5C_associated_SNPs_26094 0 0 1 0 2 NEK7 chr1:198233255 3'AG 198233255 Downstream 57bp
chr1 198233311 198233311 1 + A G LIHC 198233296 + 198233276 198233316 41 ATAAAATATTATGCATCATTCATTGAAGATAATGAACTAAA ATAAAATATTATGCATCATTCATTGAAGATAATGAGCTAAA < 41bp 1 0.127214616039028 1 0.380498349666595 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233296 chr1:198233311 synonymous SNV . 0 36 hm5C_associated_SNPs_26094 0 0 1 0 2 NEK7 chr1:198233365 5'GT 198233365 Upstream 55bp
chr7 4794986 4794986 1 + A G LIHC 4795002 + 4794982 4795022 41 CCCTACTACCGGACGGCCGACAAAGGCTGGCAGGTGAAGCC CCCTGCTACCGGACGGCCGACAAAGGCTGGCAGGTGAAGCC < 41bp 1 0.243725950431459 1 0.601761817932129 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4795002 chr7:4794986 nonsynonymous SNV 0.978 5 5 hm5C_associated_SNPs_26098 0 0 1 0 1 FOXK1 chr7:4795014 5'GT 4795014 Upstream 29bp
chr7 27833956 27833956 1 + T C LIHC 27833973 + 27833953 27833993 41 TAATGTCTTCACAAAGAAAACGGGGAATCAGCAGAAAGTGA TAACGTCTTCACAAAGAAAACGGGGAATCAGCAGAAAGTGA < 41bp 1 0.721844464669063 1 0.672766864299774 experiment 0.556311070661873 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27833973 chr7:27833956 synonymous SNV . 0 4 hm5C_associated_SNPs_26099 0 0 1 0 1 TAX1BP1 chr7:27833942 3'AG 27833942 Downstream 15bp
chr12 120875944 120875944 1 + T C LIHC 120875925 + 120875905 120875945 41 GGCGCTGCGGCAGTCCAGATCAAAAATGGCGGTAGTTGGTG GGCGCTGCGGCAGTCCAGATCAAAAATGGCGGTAGTTGGCG < 41bp 1 0.702349917588103 1 0.290809988975525 experiment 0.595300164823795 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COX6A1 ENSG00000111775 CDS Human other chr12:120875925 chr12:120875944 synonymous SNV . 0 40 hm5C_associated_SNPs_26103 0 0 1 0 1 COX6A1 chr12:120876032 5'GT 120876032 Upstream 89bp
chr17 16332223 16332223 1 + T A LIHC 16332211 + 16332191 16332231 41 GTACCTGCCCCTGCTTGTGTCTGCGCTGGTGCTGGGCTGGC GTACCTGCCCCTGCTTGTGTCTGCGCTGGTGCAGGGCTGGC < 41bp 1 0.631518418331694 1 0.443942993879318 experiment 0.736963163336612 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16332211 chr17:16332223 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_26104 0 0 0 0 2 TRPV2 chr17:16332131 3'AG 16332131 Downstream 93bp
chr17 16332223 16332223 1 + T A LIHC 16332211 + 16332191 16332231 41 GTACCTGCCCCTGCTTGTGTCTGCGCTGGTGCTGGGCTGGC GTACCTGCCCCTGCTTGTGTCTGCGCTGGTGCAGGGCTGGC < 41bp 1 0.631518418331694 1 0.443942993879318 experiment 0.736963163336612 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16332211 chr17:16332223 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_26104 0 0 0 0 2 TRPV2 chr17:16332296 5'GT 16332296 Upstream 74bp
chr22 32881139 32881139 1 + G C LIHC 32881149 + 32881129 32881169 41 TCCTCTCTGCGAGGGCAGCTCCGCTACTCTCACCTGTGTGC TCCTCTCTGCCAGGGCAGCTCCGCTACTCTCACCTGTGTGC < 41bp 1 0.437596506743188 1 0.113410949707031 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32881149 chr22:32881139 nonsynonymous SNV 0.969 2 11 hm5C_associated_SNPs_26110 0 0 1 0 2 FBXO7 chr22:32881055 3'AG 32881055 Downstream 85bp
chr22 32881139 32881139 1 + G C LIHC 32881149 + 32881129 32881169 41 TCCTCTCTGCGAGGGCAGCTCCGCTACTCTCACCTGTGTGC TCCTCTCTGCCAGGGCAGCTCCGCTACTCTCACCTGTGTGC < 41bp 1 0.437596506743188 1 0.113410949707031 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32881149 chr22:32881139 nonsynonymous SNV 0.969 2 11 hm5C_associated_SNPs_26110 0 0 1 0 2 FBXO7 chr22:32881196 5'GT 32881196 Upstream 58bp
chr16 67006828 67006828 1 + C A LIHC 67006809 + 67006789 67006829 41 CCCAATTCAACCAGGCGGAACAATATCTGGAGATCAACCCA CCCAATTCAACCAGGCGGAACAATATCTGGAGATCAACCAA < 41bp 1 0.289148187388051 1 0.315994024276733 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:67006809 chr16:67006828 nonsynonymous SNV 0.000 1 40 hm5C_associated_SNPs_26111 0 0 1 0 1 CES3 chr16:67006757 3'AG 67006757 Downstream 72bp
chr17 38610236 38610236 1 + A G LUAD 38610248 + 38610228 38610268 41 GCCGCTTCACAGAGCCGCACCCACGAGGACCTCTACATCAT GCCGCTTCGCAGAGCCGCACCCACGAGGACCTCTACATCAT < 41bp 1 0.384813048704127 1 0.0996502935886383 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38610248 chr17:38610236 synonymous SNV . 0 9 hm5C_associated_SNPs_26112 0 0 1 0 2 IGFBP4 chr17:38610180 3'AG 38610180 Downstream 57bp
chr17 38610236 38610236 1 + A G LUAD 38610248 + 38610228 38610268 41 GCCGCTTCACAGAGCCGCACCCACGAGGACCTCTACATCAT GCCGCTTCGCAGAGCCGCACCCACGAGGACCTCTACATCAT < 41bp 1 0.384813048704127 1 0.0996502935886383 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38610248 chr17:38610236 synonymous SNV . 0 9 hm5C_associated_SNPs_26112 0 0 1 0 2 IGFBP4 chr17:38610314 5'GT 38610314 Upstream 79bp
chr18 21474905 21474905 1 + C G LUAD 21474924 + 21474904 21474944 41 ACCTGGCCACCATGGGCGAGCAGCTCCGCCTGGTCAAGTCT AGCTGGCCACCATGGGCGAGCAGCTCCGCCTGGTCAAGTCT < 41bp 1 0.158461822873548 1 0.193757891654968 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21474924 chr18:21474905 nonsynonymous SNV 0.084 3 2 hm5C_associated_SNPs_26113 0 0 1 0 1 LAMA3 chr18:21474871 3'AG 21474871 Downstream 35bp
chr10 81841615 81841615 1 + C G LUAD 81841623 + 81841603 81841643 41 GTCTTCTGGCCTCAGAGTATCCCTTATCAGAACCTTGGGCC GTCTTCTGGCCTGAGAGTATCCCTTATCAGAACCTTGGGCC < 41bp 1 0.363840887774735 1 0.0401555597782135 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM254 ENSG00000133678 CDS Human protein_coding chr10:81841623 chr10:81841615 nonsynonymous SNV 1.000 0 13 hm5C_associated_SNPs_26114 0 0 0 0 2 TMEM254 chr10:81841597 3'AG 81841597 Downstream 19bp
chr10 81841615 81841615 1 + C G LUAD 81841623 + 81841603 81841643 41 GTCTTCTGGCCTCAGAGTATCCCTTATCAGAACCTTGGGCC GTCTTCTGGCCTGAGAGTATCCCTTATCAGAACCTTGGGCC < 41bp 1 0.363840887774735 1 0.0401555597782135 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM254 ENSG00000133678 CDS Human protein_coding chr10:81841623 chr10:81841615 nonsynonymous SNV 1.000 0 13 hm5C_associated_SNPs_26114 0 0 0 0 2 TMEM254 chr10:81841700 5'GT 81841700 Upstream 86bp
chr16 705355 705355 1 + C T LUAD 705347 + 705327 705367 41 GCAGTGTGCGGCTCTGGCGGCTGCGTGGCGGGGTGCTGCGT GCAGTGTGCGGCTCTGGCGGCTGCGTGGTGGGGTGCTGCGT < 41bp 1 0.480130335835965 1 0.402893155813217 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:705347 chr16:705355 synonymous SNV . 0 29 hm5C_associated_SNPs_26115 0 0 1 0 1 WDR90 chr16:705307 3'AG 705307 Downstream 49bp
chr19 56925402 56925402 1 + G T LUAD 56925395 + 56925375 56925415 41 ATGGGAATGGCTGAACCCTGCTCAGAGGAATTTGTACAGGA ATGGGAATGGCTGAACCCTGCTCAGAGTAATTTGTACAGGA < 41bp 1 0.638170771883002 1 0.108687996864319 experiment 0.723658456233996 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF583 ENSG00000198440 CDS Human protein_coding chr19:56925395 chr19:56925402 nonsynonymous SNV 0.215 2 28 hm5C_associated_SNPs_26116 0 0 0 0 2 ZNF583 chr19:56925328 3'AG 56925328 Downstream 75bp
chr19 56925402 56925402 1 + G T LUAD 56925395 + 56925375 56925415 41 ATGGGAATGGCTGAACCCTGCTCAGAGGAATTTGTACAGGA ATGGGAATGGCTGAACCCTGCTCAGAGTAATTTGTACAGGA < 41bp 1 0.638170771883002 1 0.108687996864319 experiment 0.723658456233996 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF583 ENSG00000198440 CDS Human protein_coding chr19:56925395 chr19:56925402 nonsynonymous SNV 0.215 2 28 hm5C_associated_SNPs_26116 0 0 0 0 2 ZNF583 chr19:56925454 5'GT 56925454 Upstream 53bp
chr12 66724946 66724946 1 + C G LUAD 66724950 + 66724930 66724970 41 CCAGGGGTCCGAGGAGCAAACAGTTGTCTATGTGGTGGGGA CCAGGGGTCCGAGGAGGAAACAGTTGTCTATGTGGTGGGGA < 41bp 1 0.597469064728118 1 0.420426875352859 experiment 0.805061870543764 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HELB ENSG00000127311 CDS Human protein_coding chr12:66724950 chr12:66724946 nonsynonymous SNV 0.031 0 17 hm5C_associated_SNPs_26117 0 0 0 0 1 HELB chr12:66724934 3'AG 66724934 Downstream 13bp
chr17 34001246 34001246 1 + A T LUAD 34001266 + 34001246 34001286 41 ACTCACCGCCAAGGGCACATCTATATGGAAATGAACTTCAC TCTCACCGCCAAGGGCACATCTATATGGAAATGAACTTCAC < 41bp 1 0.539497070420532 1 0.664765954017639 experiment 0.921005859158936 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP2B1 ENSG00000006125 CDS Human protein_coding chr17:34001266 chr17:34001246 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_26118 0 0 1 0 2 AP2B1 chr17:34001195 3'AG 34001195 Downstream 52bp
chr17 34001246 34001246 1 + A T LUAD 34001266 + 34001246 34001286 41 ACTCACCGCCAAGGGCACATCTATATGGAAATGAACTTCAC TCTCACCGCCAAGGGCACATCTATATGGAAATGAACTTCAC < 41bp 1 0.539497070420532 1 0.664765954017639 experiment 0.921005859158936 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP2B1 ENSG00000006125 CDS Human protein_coding chr17:34001266 chr17:34001246 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_26118 0 0 1 0 2 AP2B1 chr17:34001340 5'GT 34001340 Upstream 95bp
chr11 118952213 118952213 1 + T C LUAD 118952207 + 118952187 118952227 41 AGCTTTTCTGTGATTGCTGACTACTTTGGCAGAGGTGTTTT AGCTTTTCTGTGATTGCTGACTACTTCGGCAGAGGTGTTTT < 41bp 1 0.213291185945047 1 0.272597163915634 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VPS11 ENSG00000160695 CDS Human protein_coding chr11:118952207 chr11:118952213 synonymous SNV . 0 27 hm5C_associated_SNPs_26119 0 0 0 0 1 VPS11 chr11:118952169 3'AG 118952169 Downstream 45bp
chr7 142459706 142459706 1 + C G LUAD 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATGCG < 41bp 1 0.621841576350248 1 0.368408024311066 experiment 0.756316847299504 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459706 nonsynonymous SNV 0.013 5 39 hm5C_associated_SNPs_26120 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 82bp
chr7 142459706 142459706 1 + C G LUAD 142459693 + 142459673 142459713 41 GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC GAATGAGCAGTTCATCAATGCAGCCAAGATCATGCGCCACC < 41bp 1 0.533149560939577 1 0.0391286313533783 experiment 0.933700878120845 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459693 chr7:142459706 nonsynonymous SNV 0.013 5 34 hm5C_associated_SNPs_26121 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 82bp
chr7 142459706 142459706 1 + C G LUAD 142459696 + 142459676 142459716 41 TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC TGAGCAGTTCATCAATGCAGCCAAGATCATGCGCCACCCCC < 41bp 1 0.356409968998281 1 0.489110499620438 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459696 chr7:142459706 nonsynonymous SNV 0.013 5 31 hm5C_associated_SNPs_26122 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 82bp
chr7 142459706 142459706 1 + C G LUAD 142459703 + 142459683 142459723 41 TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGA TTCATCAATGCAGCCAAGATCATGCGCCACCCCCAATACGA < 41bp 1 0.471761936334904 1 0.172622799873352 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459703 chr7:142459706 nonsynonymous SNV 0.013 5 24 hm5C_associated_SNPs_26123 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 82bp
chr7 142459706 142459706 1 + C G LUAD 142459707 + 142459687 142459727 41 TCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGG TCAATGCAGCCAAGATCATGCGCCACCCCCAATACGACAGG < 41bp 1 0.768839266940764 1 0.160642236471176 experiment 0.462321466118473 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459707 chr7:142459706 nonsynonymous SNV 0.013 5 20 hm5C_associated_SNPs_26124 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 82bp
chr7 142459706 142459706 1 + C G LUAD 142459709 + 142459689 142459729 41 AATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA AATGCAGCCAAGATCATGCGCCACCCCCAATACGACAGGAA < 41bp 1 0.107537825955655 1 0.0504283010959625 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459709 chr7:142459706 nonsynonymous SNV 0.013 5 18 hm5C_associated_SNPs_26125 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 82bp
chr7 142459706 142459706 1 + C G LUAD 142459710 + 142459690 142459730 41 ATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG ATGCAGCCAAGATCATGCGCCACCCCCAATACGACAGGAAG < 41bp 1 0.180502074638331 1 0.0761723220348358 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459710 chr7:142459706 nonsynonymous SNV 0.013 5 17 hm5C_associated_SNPs_26126 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 82bp
chr7 142459706 142459706 1 + C G LUAD 142459712 + 142459692 142459732 41 GCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC GCAGCCAAGATCATGCGCCACCCCCAATACGACAGGAAGAC < 41bp 1 0.158323921621265 1 0.0463628172874451 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459712 chr7:142459706 nonsynonymous SNV 0.013 5 15 hm5C_associated_SNPs_26127 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 82bp
chr7 142459706 142459706 1 + C G LUAD 142459713 + 142459693 142459733 41 CAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT CAGCCAAGATCATGCGCCACCCCCAATACGACAGGAAGACT < 41bp 1 0.527031813365675 1 0.459508329629898 experiment 0.94593637326865 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459713 chr7:142459706 nonsynonymous SNV 0.013 5 14 hm5C_associated_SNPs_26128 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 82bp
chr7 142459706 142459706 1 + C G LUAD 142459714 + 142459694 142459734 41 AGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC AGCCAAGATCATGCGCCACCCCCAATACGACAGGAAGACTC < 41bp 1 0.534109871705933 1 0.17757460474968 experiment 0.931780256588134 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459714 chr7:142459706 nonsynonymous SNV 0.013 5 13 hm5C_associated_SNPs_26129 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 82bp
chr7 142459706 142459706 1 + C G LUAD 142459715 + 142459695 142459735 41 GCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCT GCCAAGATCATGCGCCACCCCCAATACGACAGGAAGACTCT < 41bp 1 0.250358612158127 1 0.159634530544281 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459715 chr7:142459706 nonsynonymous SNV 0.013 5 12 hm5C_associated_SNPs_26130 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 82bp
chr7 142459706 142459706 1 + C G LUAD 142459716 + 142459696 142459736 41 CCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCTG CCAAGATCATGCGCCACCCCCAATACGACAGGAAGACTCTG < 41bp 1 0.475091726836707 1 0.116670101881027 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459716 chr7:142459706 nonsynonymous SNV 0.013 5 11 hm5C_associated_SNPs_26131 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 82bp
chr17 43183001 43183001 1 + A G LUAD 43183002 + 43182982 43183022 41 CCTAGGTTGGACTGGTGCTACAATAACCAGTCACCAGTGCG CCTAGGTTGGACTGGTGCTGCAATAACCAGTCACCAGTGCG < 41bp 1 0.33365763482752 1 0.113702744245529 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NMT1 ENSG00000136448 CDS Human protein_coding chr17:43183002 chr17:43183001 synonymous SNV . 0 20 hm5C_associated_SNPs_26132 0 0 1 0 1 NMT1 chr17:43182987 3'AG 43182987 Downstream 15bp
chr7 129096289 129096289 1 + G T LUAD 129096284 + 129096264 129096304 41 CCTGTTTCTTCCTTAGTTTACCCTCGGTGGATTTGAGCATC CCTGTTTCTTCCTTAGTTTACCCTCTGTGGATTTGAGCATC < 41bp 1 0.0966089638583822 1 0.0317192077636719 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129096284 chr7:129096289 nonsynonymous SNV 0.980 5 26 hm5C_associated_SNPs_26133 0 0 1 0 1 STRIP2 chr7:129096280 3'AG 129096280 Downstream 10bp
chr6 15487586 15487586 1 + A T LUAD 15487577 + 15487557 15487597 41 GTCAACACGGGAGAAGGAACCTGTTCAAAAACACAAAAGCA GTCAACACGGGAGAAGGAACCTGTTCAAATACACAAAAGCA < 41bp 1 0.100268265550253 1 0.400203943252563 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control JARID2 ENSG00000008083 CDS Human protein_coding chr6:15487577 chr6:15487586 nonsynonymous SNV 0.998 3 30 hm5C_associated_SNPs_26136 0 0 1 0 1 JARID2 chr6:15487538 3'AG 15487538 Downstream 49bp
chr7 99701314 99701314 1 + A T LUAD 99701304 + 99701284 99701324 41 GCCGCCCCGTCCTGTCCAGTCGCTCTGACCAGGTGAGGGAA GCCGCCCCGTCCTGTCCAGTCGCTCTGACCTGGTGAGGGAA < 41bp 1 0.402363036268969 1 0.298231661319733 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99701304 chr7:99701314 nonsynonymous SNV 0.982 3 31 hm5C_associated_SNPs_26137 0 0 0 0 2 AP4M1 chr7:99701235 3'AG 99701235 Downstream 80bp
chr7 99701314 99701314 1 + A T LUAD 99701304 + 99701284 99701324 41 GCCGCCCCGTCCTGTCCAGTCGCTCTGACCAGGTGAGGGAA GCCGCCCCGTCCTGTCCAGTCGCTCTGACCTGGTGAGGGAA < 41bp 1 0.402363036268969 1 0.298231661319733 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99701304 chr7:99701314 nonsynonymous SNV 0.982 3 31 hm5C_associated_SNPs_26137 0 0 0 0 2 AP4M1 chr7:99701315 5'GT 99701315 Upstream 2bp
chr12 105538144 105538144 1 + G A LUAD 105538149 + 105538129 105538169 41 TAAAGCTGGATGACCGAAACCCTTTCAAAGTTGGCATGAAA TAAAGCTGGATGACCAAAACCCTTTCAAAGTTGGCATGAAA < 41bp 1 0.033884787505053 1 0.0599221587181091 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105538149 chr12:105538144 nonsynonymous SNV 0.997 3 16 hm5C_associated_SNPs_26138 0 0 1 0 2 WASHC4 chr12:105538065 3'AG 105538065 Downstream 80bp
chr12 105538144 105538144 1 + G A LUAD 105538149 + 105538129 105538169 41 TAAAGCTGGATGACCGAAACCCTTTCAAAGTTGGCATGAAA TAAAGCTGGATGACCAAAACCCTTTCAAAGTTGGCATGAAA < 41bp 1 0.033884787505053 1 0.0599221587181091 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105538149 chr12:105538144 nonsynonymous SNV 0.997 3 16 hm5C_associated_SNPs_26138 0 0 1 0 2 WASHC4 chr12:105538233 5'GT 105538233 Upstream 90bp
chr12 105538144 105538144 1 + G A LUAD 105538150 + 105538130 105538170 41 AAAGCTGGATGACCGAAACCCTTTCAAAGTTGGCATGAAAG AAAGCTGGATGACCAAAACCCTTTCAAAGTTGGCATGAAAG < 41bp 1 0.048636970114879 1 0.0923659205436707 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105538150 chr12:105538144 nonsynonymous SNV 0.997 3 15 hm5C_associated_SNPs_26139 0 0 1 0 2 WASHC4 chr12:105538065 3'AG 105538065 Downstream 80bp
chr12 105538144 105538144 1 + G A LUAD 105538150 + 105538130 105538170 41 AAAGCTGGATGACCGAAACCCTTTCAAAGTTGGCATGAAAG AAAGCTGGATGACCAAAACCCTTTCAAAGTTGGCATGAAAG < 41bp 1 0.048636970114879 1 0.0923659205436707 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105538150 chr12:105538144 nonsynonymous SNV 0.997 3 15 hm5C_associated_SNPs_26139 0 0 1 0 2 WASHC4 chr12:105538233 5'GT 105538233 Upstream 90bp
chr14 105814896 105814896 1 + G T LUAD 105814915 + 105814895 105814935 41 TGGTGATCGCTGTCAAGATGCAGGTGAGGCCGCTTGTGACC TTGTGATCGCTGTCAAGATGCAGGTGAGGCCGCTTGTGACC < 41bp 1 0.61201917753919 1 0.752837300300598 experiment 0.775961644921621 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PACS2 ENSG00000179364 CDS Human protein_coding chr14:105814915 chr14:105814896 synonymous SNV . 0 2 hm5C_associated_SNPs_26144 0 0 1 0 2 PACS2 chr14:105814830 3'AG 105814830 Downstream 67bp
chr14 105814896 105814896 1 + G T LUAD 105814915 + 105814895 105814935 41 TGGTGATCGCTGTCAAGATGCAGGTGAGGCCGCTTGTGACC TTGTGATCGCTGTCAAGATGCAGGTGAGGCCGCTTGTGACC < 41bp 1 0.61201917753919 1 0.752837300300598 experiment 0.775961644921621 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PACS2 ENSG00000179364 CDS Human protein_coding chr14:105814915 chr14:105814896 synonymous SNV . 0 2 hm5C_associated_SNPs_26144 0 0 1 0 2 PACS2 chr14:105814917 5'GT 105814917 Upstream 22bp
chr11 118516533 118516533 1 + T A LUAD 118516515 + 118516495 118516535 41 GATGCTGAAAGAGGCTCATGCAGAGAAGAACCGGCTCATGG GATGCTGAAAGAGGCTCATGCAGAGAAGAACCGGCTCAAGG < 41bp 1 0.599750416796097 1 0.798154592514038 experiment 0.800499166407807 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118516515 chr11:118516533 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_26145 0 0 1 0 1 PHLDB1 chr11:118516453 3'AG 118516453 Downstream 81bp
chr14 100367277 100367277 1 + A T LUAD 100367289 + 100367269 100367309 41 TTGCCCCCACATGTGCGCATCTGGGATTCTGTGACATTGAA TTGCCCCCTCATGTGCGCATCTGGGATTCTGTGACATTGAA < 41bp 1 0.520531557571022 1 0.234803408384323 experiment 0.958936884857956 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EML1 ENSG00000066629 CDS Human protein_coding chr14:100367289 chr14:100367277 synonymous SNV . 0 9 hm5C_associated_SNPs_26146 0 0 0 0 2 EML1 chr14:100367266 3'AG 100367266 Downstream 12bp
chr14 100367277 100367277 1 + A T LUAD 100367289 + 100367269 100367309 41 TTGCCCCCACATGTGCGCATCTGGGATTCTGTGACATTGAA TTGCCCCCTCATGTGCGCATCTGGGATTCTGTGACATTGAA < 41bp 1 0.520531557571022 1 0.234803408384323 experiment 0.958936884857956 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EML1 ENSG00000066629 CDS Human protein_coding chr14:100367289 chr14:100367277 synonymous SNV . 0 9 hm5C_associated_SNPs_26146 0 0 0 0 2 EML1 chr14:100367376 5'GT 100367376 Upstream 100bp
chr8 124787528 124787528 1 + G C LUAD 124787510 + 124787490 124787530 41 GAAAGGCTTGAGGATAACACCATTTTCATATTATACTGGGA GAAAGGCTTGAGGATAACACCATTTTCATATTATACTGCGA < 41bp 1 0.118186730883447 1 0.253320515155792 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787510 chr8:124787528 nonsynonymous SNV 0.991 0 39 hm5C_associated_SNPs_26147 0 0 1 0 1 FAM91A1 chr8:124787538 5'GT 124787538 Upstream 11bp
chr1 116940601 116940601 1 + G T LUAD 116940615 + 116940595 116940635 41 GAGATAGTGTTTGCCAGGACCTCCCCTCAGCAGAAGCTCAT GAGATATTGTTTGCCAGGACCTCCCCTCAGCAGAAGCTCAT < 41bp 1 0.211607873629241 1 0.234282404184341 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116940615 chr1:116940601 nonsynonymous SNV 0.986 3 7 hm5C_associated_SNPs_26148 0 0 1 0 2 ATP1A1 chr1:116940510 3'AG 116940510 Downstream 92bp
chr1 116940601 116940601 1 + G T LUAD 116940615 + 116940595 116940635 41 GAGATAGTGTTTGCCAGGACCTCCCCTCAGCAGAAGCTCAT GAGATATTGTTTGCCAGGACCTCCCCTCAGCAGAAGCTCAT < 41bp 1 0.211607873629241 1 0.234282404184341 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116940615 chr1:116940601 nonsynonymous SNV 0.986 3 7 hm5C_associated_SNPs_26148 0 0 1 0 2 ATP1A1 chr1:116940660 5'GT 116940660 Upstream 60bp
chr4 126337718 126337718 1 + A G LUAD 126337729 + 126337709 126337749 41 GAGTAACACAGAGTCTGGATCGGGAAACAAAAGAGCGCTTT GAGTAACACGGAGTCTGGATCGGGAAACAAAAGAGCGCTTT < 41bp 1 0.680571143297029 1 0.941075563430786 experiment 0.638857713405941 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126337729 chr4:126337718 nonsynonymous SNV 0.870 0 10 hm5C_associated_SNPs_26149 0 0 0 0 1 FAT4 chr4:126337777 5'GT 126337777 Upstream 60bp
chr14 73725989 73725989 1 + A G LUAD 73725978 + 73725958 73725998 41 TTTTGCTTCTTCTTTCTAGACTCCAGAGGCCAGTGGTGGGC TTTTGCTTCTTCTTTCTAGACTCCAGAGGCCGGTGGTGGGC < 41bp 1 0.711699576233853 1 0.933281302452087 experiment 0.576600847532295 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74772;RNA-BisSeq;HCT116;Control PAPLN ENSG00000100767 CDS Human protein_coding chr14:73725978 chr14:73725989 nonsynonymous SNV 0.007 0 32 hm5C_associated_SNPs_26150 0 0 1 0 1 PAPLN chr14:73725977 3'AG 73725977 Downstream 13bp
chr9 78772069 78772069 1 + G A LUAD 78772063 + 78772043 78772083 41 GCACGTGTGTGTGGAGAGCACAGACCGACAAATCAAGTAAT GCACGTGTGTGTGGAGAGCACAGACCAACAAATCAAGTAAT < 41bp 1 0.236519163167084 1 0.315087139606476 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78772063 chr9:78772069 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_26151 0 0 0 1 1 PCSK5 chr9:78772078 5'GT 78772078 Upstream 10bp
chr5 154169891 154169891 1 + C T LUAD 154169887 + 154169867 154169907 41 CCCTTCTTGTTCCCACAGAACACTCTGCTCCAGCCAAGGTG CCCTTCTTGTTCCCACAGAACACTTTGCTCCAGCCAAGGTG < 41bp 1 0.207837315222107 1 0.0433136224746704 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154169887 chr5:154169891 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_26152 0 0 1 0 2 LARP1 chr5:154169885 3'AG 154169885 Downstream 7bp
chr5 154169891 154169891 1 + C T LUAD 154169887 + 154169867 154169907 41 CCCTTCTTGTTCCCACAGAACACTCTGCTCCAGCCAAGGTG CCCTTCTTGTTCCCACAGAACACTTTGCTCCAGCCAAGGTG < 41bp 1 0.207837315222107 1 0.0433136224746704 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154169887 chr5:154169891 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_26152 0 0 1 0 2 LARP1 chr5:154169946 5'GT 154169946 Upstream 56bp
chr1 10435365 10435365 1 + C T LUAD 10435355 + 10435335 10435375 41 GCACAAAGCACCGTGGGGTCCTTTTGCAGGCCCTCAATGAC GCACAAAGCACCGTGGGGTCCTTTTGCAGGTCCTCAATGAC < 41bp 1 0.0389236587004145 1 0.03722083568573 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10435355 chr1:10435365 nonsynonymous SNV 0.993 4 31 hm5C_associated_SNPs_26153 0 0 1 0 2 KIF1B chr1:10435313 3'AG 10435313 Downstream 53bp
chr1 10435365 10435365 1 + C T LUAD 10435355 + 10435335 10435375 41 GCACAAAGCACCGTGGGGTCCTTTTGCAGGCCCTCAATGAC GCACAAAGCACCGTGGGGTCCTTTTGCAGGTCCTCAATGAC < 41bp 1 0.0389236587004145 1 0.03722083568573 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10435355 chr1:10435365 nonsynonymous SNV 0.993 4 31 hm5C_associated_SNPs_26153 0 0 1 0 2 KIF1B chr1:10435431 5'GT 10435431 Upstream 67bp
chr8 107752683 107752683 1 + A G LUAD 107752684 + 107752664 107752704 41 CGAACAATGACAGGTTTAGACACCCCAGTGCTGATGGTGAT CGAACAATGACAGGTTTAGGCACCCCAGTGCTGATGGTGAT < 41bp 1 0.327816450122196 1 0.103542178869247 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107752684 chr8:107752683 nonsynonymous SNV 0.998 4 20 hm5C_associated_SNPs_26154 0 0 1 0 1 OXR1 chr8:107752723 5'GT 107752723 Upstream 41bp
chr19 59060599 59060599 1 + A G LUAD 59060584 + 59060564 59060604 41 GAACCCCTGGTGCCCCACCCCTGGCTGGCATGGCCATTGTC GAACCCCTGGTGCCCCACCCCTGGCTGGCATGGCCGTTGTC < 41bp 1 0.51751653025059 1 0.600765287876129 experiment 0.96496693949882 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59060584 chr19:59060599 nonsynonymous SNV 0.993 0 36 hm5C_associated_SNPs_26155 0 0 1 0 1 TRIM28 chr19:59060607 5'GT 59060607 Upstream 9bp
chr19 59060599 59060599 1 + A G LUAD 59060588 + 59060568 59060608 41 CCCTGGTGCCCCACCCCTGGCTGGCATGGCCATTGTCAAGG CCCTGGTGCCCCACCCCTGGCTGGCATGGCCGTTGTCAAGG < 41bp 1 0.465551658281973 1 0.0390163958072662 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59060588 chr19:59060599 nonsynonymous SNV 0.993 0 32 hm5C_associated_SNPs_26156 0 0 1 0 1 TRIM28 chr19:59060607 5'GT 59060607 Upstream 9bp
chr19 59060599 59060599 1 + A G LUAD 59060592 + 59060572 59060612 41 GGTGCCCCACCCCTGGCTGGCATGGCCATTGTCAAGGTAAG GGTGCCCCACCCCTGGCTGGCATGGCCGTTGTCAAGGTAAG < 41bp 1 0.200655337102746 1 0.127493411302567 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59060592 chr19:59060599 nonsynonymous SNV 0.993 0 28 hm5C_associated_SNPs_26157 0 0 1 0 1 TRIM28 chr19:59060607 5'GT 59060607 Upstream 9bp
chr19 46198725 46198725 1 + G T LUAD 46198713 + 46198693 46198733 41 AGTTCCTGGAGGCCACGCTGCGGTCCCTGACAGCAGGTTGG AGTTCCTGGAGGCCACGCTGCGGTCCCTGACATCAGGTTGG < 41bp 1 0.167357757991553 1 0.54576849937439 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPCTL ENSG00000011478 CDS Human protein_coding chr19:46198713 chr19:46198725 nonsynonymous SNV 0.628 1 33 hm5C_associated_SNPs_26160 0 0 1 0 1 QPCTL chr19:46198695 3'AG 46198695 Downstream 31bp
chr6 160477509 160477509 1 + G A LUAD 160477524 + 160477504 160477544 41 CTGTGGAACACAGAGGCTGCCTGTCCCATTCAGACAACGAC CTGTGAAACACAGAGGCTGCCTGTCCCATTCAGACAACGAC < 41bp 1 0.0359169722868652 1 0.0890639126300812 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160477524 chr6:160477509 stopgain 1.000 1 6 hm5C_associated_SNPs_26161 0 0 1 0 2 IGF2R chr6:160477456 3'AG 160477456 Downstream 54bp
chr6 160477509 160477509 1 + G A LUAD 160477524 + 160477504 160477544 41 CTGTGGAACACAGAGGCTGCCTGTCCCATTCAGACAACGAC CTGTGAAACACAGAGGCTGCCTGTCCCATTCAGACAACGAC < 41bp 1 0.0359169722868652 1 0.0890639126300812 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160477524 chr6:160477509 stopgain 1.000 1 6 hm5C_associated_SNPs_26161 0 0 1 0 2 IGF2R chr6:160477557 5'GT 160477557 Upstream 49bp
chr6 53660211 53660211 1 + G C LUAD 53660192 + 53660172 53660212 41 GAGCTGCTGCTGGACGCCAACCAGCTCCGCGAGCTGCCCGA GAGCTGCTGCTGGACGCCAACCAGCTCCGCGAGCTGCCCCA < 41bp 1 0.512116073973203 1 0.409901976585388 experiment 0.975767852053594 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53660192 chr6:53660211 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_26162 0 0 0 0 1 LRRC1 chr6:53660213 5'GT 53660213 Upstream 3bp
chr11 134014888 134014888 1 + T A LUAD 134014879 + 134014859 134014899 41 TTTCCACTTAAACTCTGAAACAGGCACTTTGGTAAGATCTC TTTCCACTTAAACTCTGAAACAGGCACTTAGGTAAGATCTC < 41bp 1 0.393766198096961 1 0.664099395275116 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control JAM3 ENSG00000166086 CDS Human protein_coding chr11:134014879 chr11:134014888 stopgain 1.000 1 30 hm5C_associated_SNPs_26163 0 0 0 0 1 JAM3 chr11:134014889 5'GT 134014889 Upstream 2bp
chr16 675984 675984 1 + C T LUAD 675974 + 675954 675994 41 AGCGGCAGGTCCCGACGGAGCAGGCCCGCGCGTACGCAGAG AGCGGCAGGTCCCGACGGAGCAGGCCCGCGTGTACGCAGAG < 41bp 1 0.506765069167733 1 0.723743915557861 experiment 0.986469861664534 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675974 chr16:675984 nonsynonymous SNV 0.002 2 31 hm5C_associated_SNPs_26164 0 0 0 0 2 RAB40C chr16:675899 3'AG 675899 Downstream 86bp
chr16 675984 675984 1 + C T LUAD 675974 + 675954 675994 41 AGCGGCAGGTCCCGACGGAGCAGGCCCGCGCGTACGCAGAG AGCGGCAGGTCCCGACGGAGCAGGCCCGCGTGTACGCAGAG < 41bp 1 0.506765069167733 1 0.723743915557861 experiment 0.986469861664534 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675974 chr16:675984 nonsynonymous SNV 0.002 2 31 hm5C_associated_SNPs_26164 0 0 0 0 2 RAB40C chr16:675956 3'AG 675956 Downstream 29bp
chr19 4423358 4423358 1 + A G LUAD 4423372 + 4423352 4423392 41 GGAAAAAGGAAGAAGAGAAACGGTTAAGAGAAGAAGAGAAG GGAAAAGGGAAGAAGAGAAACGGTTAAGAGAAGAAGAGAAG < 41bp 1 0.176417650220058 1 0.469915986061096 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4423372 chr19:4423358 nonsynonymous SNV 0.998 2 7 hm5C_associated_SNPs_26166 0 0 1 0 2 CHAF1A chr19:4423332 3'AG 4423332 Downstream 27bp
chr19 4423358 4423358 1 + A G LUAD 4423372 + 4423352 4423392 41 GGAAAAAGGAAGAAGAGAAACGGTTAAGAGAAGAAGAGAAG GGAAAAGGGAAGAAGAGAAACGGTTAAGAGAAGAAGAGAAG < 41bp 1 0.176417650220058 1 0.469915986061096 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4423372 chr19:4423358 nonsynonymous SNV 0.998 2 7 hm5C_associated_SNPs_26166 0 0 1 0 2 CHAF1A chr19:4423392 5'GT 4423392 Upstream 35bp
chr13 52293449 52293449 1 + A T LUAD 52293456 + 52293436 52293476 41 GGCAGCGCCTGGGAGGTTATCGGACCAGTGCTGTGGCCTCA GGCAGCGCCTGGGTGGTTATCGGACCAGTGCTGTGGCCTCA < 41bp 1 0.555653842544776 1 0.919079542160034 experiment 0.888692314910449 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDFY2 ENSG00000139668 CDS Human protein_coding chr13:52293456 chr13:52293449 synonymous SNV . 0 14 hm5C_associated_SNPs_26167 0 0 1 0 1 WDFY2 chr13:52293484 5'GT 52293484 Upstream 36bp
chr11 64950964 64950964 1 + G T LUAD 64950967 + 64950947 64950987 41 GACTGCTGGCTCTTGGCGGCCATCGCCTCCCTCACTCTCAA GACTGCTGGCTCTTGGCTGCCATCGCCTCCCTCACTCTCAA < 41bp 1 0.291033560671282 1 0.167127281427383 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64950967 chr11:64950964 synonymous SNV . 0 18 hm5C_associated_SNPs_26169 0 0 1 0 2 CAPN1 chr11:64950945 3'AG 64950945 Downstream 20bp
chr11 64950964 64950964 1 + G T LUAD 64950967 + 64950947 64950987 41 GACTGCTGGCTCTTGGCGGCCATCGCCTCCCTCACTCTCAA GACTGCTGGCTCTTGGCTGCCATCGCCTCCCTCACTCTCAA < 41bp 1 0.291033560671282 1 0.167127281427383 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64950967 chr11:64950964 synonymous SNV . 0 18 hm5C_associated_SNPs_26169 0 0 1 0 2 CAPN1 chr11:64951063 5'GT 64951063 Upstream 100bp
chr1 228479688 228479688 1 + G T LUAD 228479689 + 228479669 228479709 41 GTGTGAACTGAGCAAGGTGGCCCCTGTGGAGTGGAGGAAGG GTGTGAACTGAGCAAGGTGTCCCCTGTGGAGTGGAGGAAGG < 41bp 1 0.0560750905162959 1 0.223068356513977 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228479689 chr1:228479688 nonsynonymous SNV 0.012 1 20 hm5C_associated_SNPs_26170 0 0 1 0 1 OBSCN chr1:228479599 3'AG 228479599 Downstream 90bp
chr4 154318419 154318419 1 + A T LUAD 154318425 + 154318405 154318445 41 CACTTCGAGACCAAAGGGAACAGCTAAAGGCAGAAGTAGAA CACTTCGAGACCAATGGGAACAGCTAAAGGCAGAAGTAGAA < 41bp 1 0.262352903555626 1 0.402300715446472 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MND1 ENSG00000121211 CDS Human protein_coding chr4:154318425 chr4:154318419 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_26172 0 0 1 0 2 MND1 chr4:154318371 3'AG 154318371 Downstream 49bp
chr4 154318419 154318419 1 + A T LUAD 154318425 + 154318405 154318445 41 CACTTCGAGACCAAAGGGAACAGCTAAAGGCAGAAGTAGAA CACTTCGAGACCAATGGGAACAGCTAAAGGCAGAAGTAGAA < 41bp 1 0.262352903555626 1 0.402300715446472 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MND1 ENSG00000121211 CDS Human protein_coding chr4:154318425 chr4:154318419 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_26172 0 0 1 0 2 MND1 chr4:154318485 5'GT 154318485 Upstream 67bp
chr9 131345051 131345051 1 + C A LUAD 131345031 + 131345011 131345051 41 GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATCTGCAGC GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATCTGCAGA < 41bp 1 0.118527276077987 1 0.11281880736351 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131345031 chr9:131345051 nonsynonymous SNV 0.997 3 41 hm5C_associated_SNPs_26173 0 0 1 0 2 SPTAN1 chr9:131344973 3'AG 131344973 Downstream 79bp
chr9 131345051 131345051 1 + C A LUAD 131345031 + 131345011 131345051 41 GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATCTGCAGC GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATCTGCAGA < 41bp 1 0.118527276077987 1 0.11281880736351 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131345031 chr9:131345051 nonsynonymous SNV 0.997 3 41 hm5C_associated_SNPs_26173 0 0 1 0 2 SPTAN1 chr9:131345128 5'GT 131345128 Upstream 78bp
chr6 44221294 44221294 1 + G T LUAD 44221288 + 44221268 44221308 41 CAGTTCCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGAT CAGTTCCTGATGAGATCCCCCCTCTCTAGGGCGATGAGGAT < 41bp 1 0.0508437026672261 1 0.067956268787384 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44221288 chr6:44221294 stopgain 0.294 0 27 hm5C_associated_SNPs_26175 0 0 1 0 1 HSP90AB1 chr6:44221226 3'AG 44221226 Downstream 69bp
chr6 44221294 44221294 1 + G T LUAD 44221289 + 44221269 44221309 41 AGTTCCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGATG AGTTCCTGATGAGATCCCCCCTCTCTAGGGCGATGAGGATG < 41bp 1 0.240679855442454 1 0.458399325609207 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44221289 chr6:44221294 stopgain 0.294 0 26 hm5C_associated_SNPs_26176 0 0 1 0 1 HSP90AB1 chr6:44221226 3'AG 44221226 Downstream 69bp
chr4 87691037 87691037 1 + G A LUAD 87691057 + 87691037 87691077 41 GCTCTTTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTG ACTCTTTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTG < 41bp 1 0.336810449479072 1 0.743921458721161 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPN13 ENSG00000163629 CDS Human protein_coding chr4:87691057 chr4:87691037 synonymous SNV . 0 1 hm5C_associated_SNPs_26177 0 0 1 0 1 PTPN13 chr4:87691136 5'GT 87691136 Upstream 100bp
chr7 2686509 2686509 1 + C T LUAD 2686507 + 2686487 2686527 41 GCCCTGCTGCTCCTGGGGGCCGCCGCCCTGGCCTGCCTCGC GCCCTGCTGCTCCTGGGGGCCGTCGCCCTGGCCTGCCTCGC < 41bp 1 0.295751789139809 1 0.545461714267731 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686507 chr7:2686509 nonsynonymous SNV 0.250 0 23 hm5C_associated_SNPs_26183 0 0 1 0 1 TTYH3 chr7:2686487 3'AG 2686487 Downstream 23bp
chr12 132546780 132546780 1 + C T LUAD 132546776 + 132546756 132546796 41 AACGACTCAGGGTGTTCGAGCGGTCACTTCTGTGACAGCCT AACGACTCAGGGTGTTCGAGCGGTTACTTCTGTGACAGCCT < 41bp 1 0.0904410794382227 1 0.384392619132996 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546776 chr12:132546780 synonymous SNV . 0 25 hm5C_associated_SNPs_26184 0 0 1 0 1 EP400 chr12:132546868 5'GT 132546868 Upstream 89bp
chr14 61201638 61201638 1 + A T LUAD 61201633 + 61201613 61201653 41 CACCAAATATCGGAACCCCTCCTTGAAGCTGATGGTGAATG CACCAAATATCGGAACCCCTCCTTGTAGCTGATGGTGAATG < 41bp 1 0.139479573075304 1 0.12993249297142 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61201633 chr14:61201638 stopgain 0.997 1 26 hm5C_associated_SNPs_26185 0 0 1 0 1 MNAT1 chr14:61201669 5'GT 61201669 Upstream 32bp
chr5 54456044 54456044 1 + G A LUAD 54456062 + 54456042 54456082 41 CCGCTAAAATGTTCCGGGCCCAGAGCAAAGGTATTTGCAGT CCACTAAAATGTTCCGGGCCCAGAGCAAAGGTATTTGCAGT < 41bp 1 0.500625252458508 1 0.438946038484573 experiment 0.998749495082984 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPX8 ENSG00000164294 CDS Human protein_coding chr5:54456062 chr5:54456044 synonymous SNV . 0 3 hm5C_associated_SNPs_26188 0 0 1 0 1 GPX8 chr5:54456071 5'GT 54456071 Upstream 28bp
chr16 11133706 11133706 1 + A G LUAD 11133688 + 11133668 11133708 41 AGACCACCTACAACCACCCGCTAGCTGAAAGACTCATCAGG AGACCACCTACAACCACCCGCTAGCTGAAAGACTCATCGGG < 41bp 1 0.124504225546503 1 0.387456685304642 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11133688 chr16:11133706 nonsynonymous SNV 0.991 3 39 hm5C_associated_SNPs_26189 0 0 1 0 2 CLEC16A chr16:11133611 3'AG 11133611 Downstream 96bp
chr16 11133706 11133706 1 + A G LUAD 11133688 + 11133668 11133708 41 AGACCACCTACAACCACCCGCTAGCTGAAAGACTCATCAGG AGACCACCTACAACCACCCGCTAGCTGAAAGACTCATCGGG < 41bp 1 0.124504225546503 1 0.387456685304642 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11133688 chr16:11133706 nonsynonymous SNV 0.991 3 39 hm5C_associated_SNPs_26189 0 0 1 0 2 CLEC16A chr16:11133733 5'GT 11133733 Upstream 28bp
chr16 11133706 11133706 1 + A G LUAD 11133722 + 11133702 11133742 41 CATCAGGATCATGAACAACGCTGCCCAGCCAGGTGCCCACT CATCGGGATCATGAACAACGCTGCCCAGCCAGGTGCCCACT < 41bp 1 0.310680117153693 1 0.0139681100845337 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11133722 chr16:11133706 nonsynonymous SNV 0.991 3 5 hm5C_associated_SNPs_26190 0 0 1 0 2 CLEC16A chr16:11133611 3'AG 11133611 Downstream 96bp
chr16 11133706 11133706 1 + A G LUAD 11133722 + 11133702 11133742 41 CATCAGGATCATGAACAACGCTGCCCAGCCAGGTGCCCACT CATCGGGATCATGAACAACGCTGCCCAGCCAGGTGCCCACT < 41bp 1 0.310680117153693 1 0.0139681100845337 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11133722 chr16:11133706 nonsynonymous SNV 0.991 3 5 hm5C_associated_SNPs_26190 0 0 1 0 2 CLEC16A chr16:11133733 5'GT 11133733 Upstream 28bp
chr16 11133706 11133706 1 + A G LUAD 11133726 + 11133706 11133746 41 AGGATCATGAACAACGCTGCCCAGCCAGGTGCCCACTTGGG GGGATCATGAACAACGCTGCCCAGCCAGGTGCCCACTTGGG < 41bp 1 0.0809649954498396 1 0.0444182157516479 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11133726 chr16:11133706 nonsynonymous SNV 0.991 3 1 hm5C_associated_SNPs_26191 0 0 1 0 2 CLEC16A chr16:11133611 3'AG 11133611 Downstream 96bp
chr16 11133706 11133706 1 + A G LUAD 11133726 + 11133706 11133746 41 AGGATCATGAACAACGCTGCCCAGCCAGGTGCCCACTTGGG GGGATCATGAACAACGCTGCCCAGCCAGGTGCCCACTTGGG < 41bp 1 0.0809649954498396 1 0.0444182157516479 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11133726 chr16:11133706 nonsynonymous SNV 0.991 3 1 hm5C_associated_SNPs_26191 0 0 1 0 2 CLEC16A chr16:11133733 5'GT 11133733 Upstream 28bp
chr12 104340715 104340715 1 + C G LUAD 104340701 + 104340681 104340721 41 ATGCTTCGCCTCAGTTTGAACATTGACCCTGATGCAAAGGT ATGCTTCGCCTCAGTTTGAACATTGACCCTGATGGAAAGGT < 41bp 1 0.0868667589813146 1 0.238312512636185 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340701 chr12:104340715 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_26192 0 0 1 0 1 HSP90B1 chr12:104340719 5'GT 104340719 Upstream 5bp
chr12 104340715 104340715 1 + C G LUAD 104340707 + 104340687 104340727 41 CGCCTCAGTTTGAACATTGACCCTGATGCAAAGGTTTGTAT CGCCTCAGTTTGAACATTGACCCTGATGGAAAGGTTTGTAT < 41bp 1 0.257201770598508 1 0.055212527513504 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340707 chr12:104340715 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_26193 0 0 1 0 1 HSP90B1 chr12:104340719 5'GT 104340719 Upstream 5bp
chr12 104340715 104340715 1 + C G LUAD 104340709 + 104340689 104340729 41 CCTCAGTTTGAACATTGACCCTGATGCAAAGGTTTGTATCC CCTCAGTTTGAACATTGACCCTGATGGAAAGGTTTGTATCC < 41bp 1 0.456682045974393 1 0.227345913648605 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340709 chr12:104340715 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_26194 0 0 1 0 1 HSP90B1 chr12:104340719 5'GT 104340719 Upstream 5bp
chr7 142460350 142460350 1 + T C LUAD 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCCACC < 41bp 1 0.449824656561836 1 0.217561632394791 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460350 nonsynonymous SNV 0.343 5 38 hm5C_associated_SNPs_26195 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 69bp
chr7 142460350 142460350 1 + T C LUAD 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCCACC < 41bp 1 0.449824656561836 1 0.217561632394791 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460350 nonsynonymous SNV 0.343 5 38 hm5C_associated_SNPs_26195 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 69bp
chr7 142460350 142460350 1 + T C LUAD 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAGCCAGGCTAAGTGTGAAGCCTCCCACCCTGGAAAGATTA < 41bp 1 0.0308231749418951 1 0.101603388786316 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460350 nonsynonymous SNV 0.343 5 26 hm5C_associated_SNPs_26196 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 69bp
chr7 142460350 142460350 1 + T C LUAD 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAGCCAGGCTAAGTGTGAAGCCTCCCACCCTGGAAAGATTA < 41bp 1 0.0308231749418951 1 0.101603388786316 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460350 nonsynonymous SNV 0.343 5 26 hm5C_associated_SNPs_26196 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 69bp
chr7 142460350 142460350 1 + T C LUAD 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AGCCAGGCTAAGTGTGAAGCCTCCCACCCTGGAAAGATTAC < 41bp 1 0.183772882135676 1 0.199969828128815 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460350 nonsynonymous SNV 0.343 5 25 hm5C_associated_SNPs_26197 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 69bp
chr7 142460350 142460350 1 + T C LUAD 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AGCCAGGCTAAGTGTGAAGCCTCCCACCCTGGAAAGATTAC < 41bp 1 0.183772882135676 1 0.199969828128815 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460350 nonsynonymous SNV 0.343 5 25 hm5C_associated_SNPs_26197 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 69bp
chr7 142460350 142460350 1 + T C LUAD 142460348 + 142460328 142460368 41 CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA CCAGGCTAAGTGTGAAGCCTCCCACCCTGGAAAGATTACCA < 41bp 1 0.0623206345888206 1 0.102708756923676 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460348 chr7:142460350 nonsynonymous SNV 0.343 5 23 hm5C_associated_SNPs_26198 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 69bp
chr7 142460350 142460350 1 + T C LUAD 142460348 + 142460328 142460368 41 CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA CCAGGCTAAGTGTGAAGCCTCCCACCCTGGAAAGATTACCA < 41bp 1 0.0623206345888206 1 0.102708756923676 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460348 chr7:142460350 nonsynonymous SNV 0.343 5 23 hm5C_associated_SNPs_26198 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 69bp
chr7 142460350 142460350 1 + T C LUAD 142460349 + 142460329 142460369 41 CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG CAGGCTAAGTGTGAAGCCTCCCACCCTGGAAAGATTACCAG < 41bp 1 0.090137558989128 1 0.146954149007797 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460349 chr7:142460350 nonsynonymous SNV 0.343 5 22 hm5C_associated_SNPs_26199 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 69bp
chr7 142460350 142460350 1 + T C LUAD 142460349 + 142460329 142460369 41 CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG CAGGCTAAGTGTGAAGCCTCCCACCCTGGAAAGATTACCAG < 41bp 1 0.090137558989128 1 0.146954149007797 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460349 chr7:142460350 nonsynonymous SNV 0.343 5 22 hm5C_associated_SNPs_26199 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 69bp
chr7 142460350 142460350 1 + T C LUAD 142460352 + 142460332 142460372 41 GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA GCTAAGTGTGAAGCCTCCCACCCTGGAAAGATTACCAGCAA < 41bp 1 0.374434695626298 1 0.502806305885315 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460352 chr7:142460350 nonsynonymous SNV 0.343 5 19 hm5C_associated_SNPs_26200 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 69bp
chr7 142460350 142460350 1 + T C LUAD 142460352 + 142460332 142460372 41 GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA GCTAAGTGTGAAGCCTCCCACCCTGGAAAGATTACCAGCAA < 41bp 1 0.374434695626298 1 0.502806305885315 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460352 chr7:142460350 nonsynonymous SNV 0.343 5 19 hm5C_associated_SNPs_26200 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 69bp
chr7 142460350 142460350 1 + T C LUAD 142460353 + 142460333 142460373 41 CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC CTAAGTGTGAAGCCTCCCACCCTGGAAAGATTACCAGCAAC < 41bp 1 0.23323743547366 1 0.634869456291199 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460353 chr7:142460350 nonsynonymous SNV 0.343 5 18 hm5C_associated_SNPs_26201 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 69bp
chr7 142460350 142460350 1 + T C LUAD 142460353 + 142460333 142460373 41 CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC CTAAGTGTGAAGCCTCCCACCCTGGAAAGATTACCAGCAAC < 41bp 1 0.23323743547366 1 0.634869456291199 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460353 chr7:142460350 nonsynonymous SNV 0.343 5 18 hm5C_associated_SNPs_26201 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 69bp
chr7 142460350 142460350 1 + T C LUAD 142460354 + 142460334 142460374 41 TAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAACA TAAGTGTGAAGCCTCCCACCCTGGAAAGATTACCAGCAACA < 41bp 1 0.740855781514616 1 0.540426790714264 experiment 0.518288436970769 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460354 chr7:142460350 nonsynonymous SNV 0.343 5 17 hm5C_associated_SNPs_26202 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 69bp
chr7 142460350 142460350 1 + T C LUAD 142460354 + 142460334 142460374 41 TAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAACA TAAGTGTGAAGCCTCCCACCCTGGAAAGATTACCAGCAACA < 41bp 1 0.740855781514616 1 0.540426790714264 experiment 0.518288436970769 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460354 chr7:142460350 nonsynonymous SNV 0.343 5 17 hm5C_associated_SNPs_26202 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 69bp
chr7 142460350 142460350 1 + T C LUAD 142460366 + 142460346 142460386 41 CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG CTCCCACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG < 41bp 1 0.172841264653147 1 0.103430211544037 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460366 chr7:142460350 nonsynonymous SNV 0.343 5 5 hm5C_associated_SNPs_26203 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 69bp
chr7 142460350 142460350 1 + T C LUAD 142460366 + 142460346 142460386 41 CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG CTCCCACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG < 41bp 1 0.172841264653147 1 0.103430211544037 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460366 chr7:142460350 nonsynonymous SNV 0.343 5 5 hm5C_associated_SNPs_26203 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 69bp
chr7 142460350 142460350 1 + T C LUAD 142460367 + 142460347 142460387 41 TCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG TCCCACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG < 41bp 1 0.66222490058765 1 0.769735217094421 experiment 0.675550198824699 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460367 chr7:142460350 nonsynonymous SNV 0.343 5 4 hm5C_associated_SNPs_26204 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 69bp
chr7 142460350 142460350 1 + T C LUAD 142460367 + 142460347 142460387 41 TCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG TCCCACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG < 41bp 1 0.66222490058765 1 0.769735217094421 experiment 0.675550198824699 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460367 chr7:142460350 nonsynonymous SNV 0.343 5 4 hm5C_associated_SNPs_26204 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 69bp
chr7 142460350 142460350 1 + T C LUAD 142460370 + 142460350 142460390 41 TACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT CACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT < 41bp 1 0.469832629559462 1 0.626040816307068 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460370 chr7:142460350 nonsynonymous SNV 0.343 5 1 hm5C_associated_SNPs_26205 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 69bp
chr7 142460350 142460350 1 + T C LUAD 142460370 + 142460350 142460390 41 TACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT CACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT < 41bp 1 0.469832629559462 1 0.626040816307068 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460370 chr7:142460350 nonsynonymous SNV 0.343 5 1 hm5C_associated_SNPs_26205 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 69bp
chr17 7983194 7983194 1 + G T LUAD 7983202 + 7983182 7983222 41 GGATCAGGCCGGGGTTGACGCCGTTGAGGTACTGGTACCCA GGATCAGGCCGGTGTTGACGCCGTTGAGGTACTGGTACCCA < 41bp 1 0.345351953029358 1 0.223461508750916 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALOX12B ENSG00000179477 CDS Human protein_coding chr17:7983202 chr17:7983194 nonsynonymous SNV 0.986 5 13 hm5C_associated_SNPs_26215 0 0 0 0 1 ALOX12B chr17:7983123 3'AG 7983123 Downstream 72bp
chr10 118313347 118313347 1 + A G LUAD 118313333 + 118313313 118313353 41 TGGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTT TGGAAGGAGAACCAATGGGACCATTGGACGCATCGCAGGTT < 41bp 1 0.145379015021065 1 0.0501827597618103 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313333 chr10:118313347 nonsynonymous SNV 0.954 5 35 hm5C_associated_SNPs_26216 0 0 0 0 1 PNLIP chr10:118313350 5'GT 118313350 Upstream 4bp
chr10 118313347 118313347 1 + A G LUAD 118313334 + 118313314 118313354 41 GGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTTG GGAAGGAGAACCAATGGGACCATTGGACGCATCGCAGGTTG < 41bp 1 0.497839403641734 1 0.130725413560867 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313334 chr10:118313347 nonsynonymous SNV 0.954 5 34 hm5C_associated_SNPs_26217 0 0 0 0 1 PNLIP chr10:118313350 5'GT 118313350 Upstream 4bp
chr19 47491298 47491298 1 + G C LUAD 47491283 + 47491263 47491303 41 ATCTACCGGGTCAGCGGGAACAAGTCTGAGATGGAGAGTCT ATCTACCGGGTCAGCGGGAACAAGTCTGAGATGGACAGTCT < 41bp 1 0.390934784219615 1 0.404889047145844 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491283 chr19:47491298 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_26221 0 0 1 0 2 ARHGAP35 chr19:47491246 3'AG 47491246 Downstream 53bp
chr19 47491298 47491298 1 + G C LUAD 47491283 + 47491263 47491303 41 ATCTACCGGGTCAGCGGGAACAAGTCTGAGATGGAGAGTCT ATCTACCGGGTCAGCGGGAACAAGTCTGAGATGGACAGTCT < 41bp 1 0.390934784219615 1 0.404889047145844 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491283 chr19:47491298 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_26221 0 0 1 0 2 ARHGAP35 chr19:47491323 5'GT 47491323 Upstream 26bp
chr2 171818217 171818217 1 + C T LUAD 171818210 + 171818190 171818230 41 TTATTGCCACCACAAGTAAACCAGTCCCTCACTTCTGTGCC TTATTGCCACCACAAGTAAACCAGTCCTTCACTTCTGTGCC < 41bp 1 0.215165798144248 1 0.0841170847415924 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171818210 chr2:171818217 nonsynonymous SNV 0.992 1 28 hm5C_associated_SNPs_26222 0 0 1 0 2 GORASP2 chr2:171818173 3'AG 171818173 Downstream 45bp
chr2 171818217 171818217 1 + C T LUAD 171818210 + 171818190 171818230 41 TTATTGCCACCACAAGTAAACCAGTCCCTCACTTCTGTGCC TTATTGCCACCACAAGTAAACCAGTCCTTCACTTCTGTGCC < 41bp 1 0.215165798144248 1 0.0841170847415924 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171818210 chr2:171818217 nonsynonymous SNV 0.992 1 28 hm5C_associated_SNPs_26222 0 0 1 0 2 GORASP2 chr2:171818259 5'GT 171818259 Upstream 43bp
chr20 36149769 36149769 1 - C T LUAD 36149751 - 36149731 36149771 41 ATGAGCAGTTCAGCCGAGGCCGCCGCCACTGCCGCCATGGT ATAAGCAGTTCAGCCGAGGCCGCCGCCACTGCCGCCATGGT < 41bp 1 0.529347612276973 1 0.522792100906372 experiment 0.941304775446054 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NNAT ENSG00000053438 CDS Human other chr20:36149751 chr20:36149769 synonymous SNV . 0 3 hm5C_associated_SNPs_26223 0 0 1 0 2 BLCAP;NNAT chr20:36149721 5'GT 36149721 Upstream 49bp
chr20 36149769 36149769 1 - C T LUAD 36149751 - 36149731 36149771 41 ATGAGCAGTTCAGCCGAGGCCGCCGCCACTGCCGCCATGGT ATAAGCAGTTCAGCCGAGGCCGCCGCCACTGCCGCCATGGT < 41bp 1 0.529347612276973 1 0.522792100906372 experiment 0.941304775446054 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NNAT ENSG00000053438 CDS Human protein_coding chr20:36149751 chr20:36149769 synonymous SNV . 0 3 hm5C_associated_SNPs_26223 0 0 1 0 2 BLCAP chr20:36149853 3'AG 36149853 Downstream 85bp
chr20 36149769 36149769 1 - C T LUAD 36149752 - 36149732 36149772 41 GATGAGCAGTTCAGCCGAGGCCGCCGCCACTGCCGCCATGG GATAAGCAGTTCAGCCGAGGCCGCCGCCACTGCCGCCATGG < 41bp 1 0.267623611684503 1 0.209462463855743 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NNAT ENSG00000053438 CDS Human other chr20:36149752 chr20:36149769 synonymous SNV . 0 4 hm5C_associated_SNPs_26224 0 0 1 0 2 BLCAP;NNAT chr20:36149721 5'GT 36149721 Upstream 49bp
chr20 36149769 36149769 1 - C T LUAD 36149752 - 36149732 36149772 41 GATGAGCAGTTCAGCCGAGGCCGCCGCCACTGCCGCCATGG GATAAGCAGTTCAGCCGAGGCCGCCGCCACTGCCGCCATGG < 41bp 1 0.267623611684503 1 0.209462463855743 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NNAT ENSG00000053438 CDS Human protein_coding chr20:36149752 chr20:36149769 synonymous SNV . 0 4 hm5C_associated_SNPs_26224 0 0 1 0 2 BLCAP chr20:36149853 3'AG 36149853 Downstream 85bp
chr4 1343562 1343562 1 + G T LUAD 1343544 + 1343524 1343564 41 AGGCGGCACAGAGGCTGAGGCAGGCGACCACCCGGGCCGTG AGGCGGCACAGAGGCTGAGGCAGGCGACCACCCGGGCCTTG < 41bp 1 0.787904630136947 1 0.873534321784973 experiment 0.424190739726107 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UVSSA ENSG00000163945 CDS Human protein_coding chr4:1343544 chr4:1343562 nonsynonymous SNV 0.004 3 39 hm5C_associated_SNPs_26225 0 0 0 0 1 UVSSA chr4:1343642 5'GT 1343642 Upstream 81bp
chr17 39978046 39978046 1 + G T LUAD 39978062 + 39978042 39978082 41 CAAGGATGGCGAGGTCCCTCCGGAGGAGGTGGGTGAAGGTT CAAGTATGGCGAGGTCCCTCCGGAGGAGGTGGGTGAAGGTT < 41bp 1 0.511313335971648 1 0.722146451473236 experiment 0.977373328056704 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39978062 chr17:39978046 nonsynonymous SNV 0.912 4 5 hm5C_associated_SNPs_26227 0 0 1 0 1 FKBP10 chr17:39978069 5'GT 39978069 Upstream 24bp
chr17 4905834 4905834 1 + C T LUAD 4905833 + 4905813 4905853 41 AGTCGGGGTTCTCTGCGGGTCCGGGAGCACCCCATCCTGGG AGTCGGGGTTCTCTGCGGGTCTGGGAGCACCCCATCCTGGG < 41bp 1 0.753168954177932 1 0.724071741104126 experiment 0.493662091644137 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905833 chr17:4905834 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_26229 1 0 1 0 1 KIF1C chr17:4905759 3'AG 4905759 Downstream 76bp
chr7 98528439 98528439 1 + G T LUAD 98528424 + 98528404 98528444 41 AGACATTCCTGAAAGCACTTCTCTTTGTCATGATGGACTTA AGACATTCCTGAAAGCACTTCTCTTTGTCATGATGTACTTA < 41bp 1 0.0423969553469467 1 0.140683174133301 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98528424 chr7:98528439 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_26234 0 0 1 0 1 TRRAP chr7:98528453 5'GT 98528453 Upstream 15bp
chr7 98528439 98528439 1 + G T LUAD 98528441 + 98528421 98528461 41 CTTCTCTTTGTCATGATGGACTTAACTGGAGAGGTAGGTGA CTTCTCTTTGTCATGATGTACTTAACTGGAGAGGTAGGTGA < 41bp 1 0.119082205614942 1 0.0902923345565796 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98528441 chr7:98528439 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_26235 0 0 1 0 1 TRRAP chr7:98528453 5'GT 98528453 Upstream 15bp
chr7 36445887 36445887 1 + A T LUAD 36445868 + 36445848 36445888 41 CCCTCCCAGACCTCTGCTTTCAAATGCCTCGGCAACTCCAG CCCTCCCAGACCTCTGCTTTCAAATGCCTCGGCAACTCCTG < 41bp 1 0.569817662435417 1 0.357682853937149 experiment 0.860364675129166 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36445868 chr7:36445887 synonymous SNV . 0 40 hm5C_associated_SNPs_26236 0 0 1 0 1 ANLN chr7:36445790 3'AG 36445790 Downstream 98bp
chr10 128797638 128797638 1 + G T LUAD 128797628 + 128797608 128797648 41 ATTTTTCAAGTGAGAACTACCTGGTTCGCTGGTCCAGTTCA ATTTTTCAAGTGAGAACTACCTGGTTCGCTTGTCCAGTTCA < 41bp 1 0.201257782676851 1 0.37649992108345 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:128797628 chr10:128797638 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_26238 0 0 1 0 2 DOCK1 chr10:128797618 3'AG 128797618 Downstream 21bp
chr10 128797638 128797638 1 + G T LUAD 128797628 + 128797608 128797648 41 ATTTTTCAAGTGAGAACTACCTGGTTCGCTGGTCCAGTTCA ATTTTTCAAGTGAGAACTACCTGGTTCGCTTGTCCAGTTCA < 41bp 1 0.201257782676851 1 0.37649992108345 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:128797628 chr10:128797638 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_26238 0 0 1 0 2 DOCK1 chr10:128797699 5'GT 128797699 Upstream 62bp
chr16 22328517 22328517 1 + G A LUAD 22328499 + 22328479 22328519 41 CTGCGCACGCTGCCCCTGGCCGATCAGATCAAGATCCTGAT CTGCGCACGCTGCCCCTGGCCGATCAGATCAAGATCCTAAT < 41bp 1 0.166686031115776 1 0.144210040569305 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22328499 chr16:22328517 synonymous SNV . 0 39 hm5C_associated_SNPs_26239 0 0 1 0 2 POLR3E chr16:22328436 3'AG 22328436 Downstream 82bp
chr16 22328517 22328517 1 + G A LUAD 22328499 + 22328479 22328519 41 CTGCGCACGCTGCCCCTGGCCGATCAGATCAAGATCCTGAT CTGCGCACGCTGCCCCTGGCCGATCAGATCAAGATCCTAAT < 41bp 1 0.166686031115776 1 0.144210040569305 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22328499 chr16:22328517 synonymous SNV . 0 39 hm5C_associated_SNPs_26239 0 0 1 0 2 POLR3E chr16:22328527 5'GT 22328527 Upstream 11bp
chr7 129946636 129946636 1 + G C LUAD 129946651 + 129946631 129946671 41 TATCTGATTACCAGAGGGATCCAGCTATCACCTCCATCTTG TATCTCATTACCAGAGGGATCCAGCTATCACCTCCATCTTG < 41bp 1 0.181888388324674 1 0.237688153982162 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129946651 chr7:129946636 nonsynonymous SNV 0.990 4 6 hm5C_associated_SNPs_26240 0 0 1 0 1 CPA4 chr7:129946627 3'AG 129946627 Downstream 10bp
chr12 4459029 4459029 1 + G T LUAD 4459031 + 4459011 4459051 41 CAAATTTTGCAAAGATATGACGGTAAAGTATGACTCAAGAC CAAATTTTGCAAAGATATTACGGTAAAGTATGACTCAAGAC < 41bp 1 0.494921194639183 1 0.504848480224609 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TIGAR ENSG00000078237 CDS Human protein_coding chr12:4459031 chr12:4459029 nonsynonymous SNV 0.624 0 19 hm5C_associated_SNPs_26241 0 0 1 0 1 TIGAR chr12:4458985 3'AG 4458985 Downstream 45bp
chr12 4459026 4459026 1 + T G LUAD 4459031 + 4459011 4459051 41 CAAATTTTGCAAAGATATGACGGTAAAGTATGACTCAAGAC CAAATTTTGCAAAGAGATGACGGTAAAGTATGACTCAAGAC < 41bp 1 0.47007253287313 1 0.406071037054062 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TIGAR ENSG00000078237 CDS Human protein_coding chr12:4459031 chr12:4459026 nonsynonymous SNV 0.672 1 16 hm5C_associated_SNPs_26242 0 0 1 0 1 TIGAR chr12:4458985 3'AG 4458985 Downstream 42bp
chr2 233671355 233671355 1 + C T LUAD 233671347 + 233671327 233671367 41 GGGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATG GGGTTCCCTTTTCTCCAGGTCCAGCTCCTCCTCCTCATATG < 41bp 1 0.119984989638748 1 0.0547673404216766 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671347 chr2:233671355 synonymous SNV . 0 29 hm5C_associated_SNPs_26243 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 13bp
chr2 233671355 233671355 1 + C T LUAD 233671348 + 233671328 233671368 41 GGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGG GGTTCCCTTTTCTCCAGGTCCAGCTCCTCCTCCTCATATGG < 41bp 1 0.183136705246623 1 0.0759700834751129 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671348 chr2:233671355 synonymous SNV . 0 28 hm5C_associated_SNPs_26244 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 13bp
chr2 233671355 233671355 1 + C T LUAD 233671351 + 233671331 233671371 41 TCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAA TCCCTTTTCTCCAGGTCCAGCTCCTCCTCCTCATATGGTAA < 41bp 1 0.119544706785619 1 0.118804126977921 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671351 chr2:233671355 synonymous SNV . 0 25 hm5C_associated_SNPs_26245 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 13bp
chr2 233671355 233671355 1 + C T LUAD 233671354 + 233671334 233671374 41 CTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTA CTTTTCTCCAGGTCCAGCTCCTCCTCCTCATATGGTAAGTA < 41bp 1 0.138126035790418 1 0.1811703145504 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671354 chr2:233671355 synonymous SNV . 0 22 hm5C_associated_SNPs_26246 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 13bp
chr2 233671355 233671355 1 + C T LUAD 233671356 + 233671336 233671376 41 TTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTACC TTTCTCCAGGTCCAGCTCCTCCTCCTCATATGGTAAGTACC < 41bp 1 0.0324468636557143 1 0.239792138338089 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671356 chr2:233671355 synonymous SNV . 0 20 hm5C_associated_SNPs_26247 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 13bp
chr2 233671355 233671355 1 + C T LUAD 233671357 + 233671337 233671377 41 TTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTACCT TTCTCCAGGTCCAGCTCCTCCTCCTCATATGGTAAGTACCT < 41bp 1 0.211168547451518 1 0.112147361040115 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671357 chr2:233671355 synonymous SNV . 0 19 hm5C_associated_SNPs_26248 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 13bp
chr5 109065175 109065175 1 + G T LUAD 109065166 + 109065146 109065186 41 GTCTGAGATCTCTTACCTTTCAAAGTGGTGGGATATTATAG GTCTGAGATCTCTTACCTTTCAAAGTGGTTGGATATTATAG < 41bp 1 0.345059918468236 1 0.763043403625488 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAN2A1 ENSG00000112893 CDS Human protein_coding chr5:109065166 chr5:109065175 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_26249 0 0 1 0 1 MAN2A1 chr5:109065214 5'GT 109065214 Upstream 40bp
chr16 67006790 67006790 1 + C T LUAD 67006809 + 67006789 67006829 41 CCCAATTCAACCAGGCGGAACAATATCTGGAGATCAACCCA CTCAATTCAACCAGGCGGAACAATATCTGGAGATCAACCCA < 41bp 1 0.262567156342775 1 0.313679993152618 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:67006809 chr16:67006790 synonymous SNV . 0 2 hm5C_associated_SNPs_26250 0 0 0 0 1 CES3 chr16:67006757 3'AG 67006757 Downstream 34bp
chr7 69599543 69599543 1 + G T LUAD 69599551 + 69599531 69599571 41 CCTTCCAGCTTGGGAACAGGCTACTTCGTAAGTCTATCTCA CCTTCCAGCTTGTGAACAGGCTACTTCGTAAGTCTATCTCA < 41bp 1 0.178252716007429 1 0.0315712094306946 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69599551 chr7:69599543 stopgain 1.000 0 13 hm5C_associated_SNPs_26252 0 0 0 0 1 AUTS2 chr7:69599557 5'GT 69599557 Upstream 15bp
chr19 54711356 54711356 1 + G T LUAD 54711362 + 54711342 54711382 41 CGCTCTCCCTACGGGGGTGGCCGCCCGGGCCGCGTGAAGAG CGCTCTCCCTACGGTGGTGGCCGCCCGGGCCGCGTGAAGAG < 41bp 1 0.344894900936594 1 0.150362640619278 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS9 ENSG00000170889 CDS Human protein_coding chr19:54711362 chr19:54711356 synonymous SNV . 0 15 hm5C_associated_SNPs_26255 0 0 1 0 1 RPS9 chr19:54711266 3'AG 54711266 Downstream 91bp
chr19 54711356 54711356 1 + G T LUAD 54711363 + 54711343 54711383 41 GCTCTCCCTACGGGGGTGGCCGCCCGGGCCGCGTGAAGAGG GCTCTCCCTACGGTGGTGGCCGCCCGGGCCGCGTGAAGAGG < 41bp 1 0.536020744931297 1 0.248681217432022 experiment 0.927958510137405 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS9 ENSG00000170889 CDS Human protein_coding chr19:54711363 chr19:54711356 synonymous SNV . 0 14 hm5C_associated_SNPs_26256 0 0 1 0 1 RPS9 chr19:54711266 3'AG 54711266 Downstream 91bp
chr10 4877971 4877971 1 + C G LUAD 4877959 + 4877939 4877979 41 TTGCCTCTGGACGAGAGCAACATGGTTATTCCCAGTGACAC TTGCCTCTGGACGAGAGCAACATGGTTATTCCGAGTGACAC < 41bp 1 0.607219184410967 1 0.0910830199718475 experiment 0.785561631178066 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4877959 chr10:4877971 synonymous SNV . 0 33 hm5C_associated_SNPs_26261 0 0 1 0 1 AKR1E2 chr10:4878001 5'GT 4878001 Upstream 31bp
chr1 200730028 200730028 1 + C G LUAD 200730036 + 200730016 200730056 41 CCAGGAACACATCAAACCACCTGTTGTTAATTTGCTTCTAT CCAGGAACACATGAAACCACCTGTTGTTAATTTGCTTCTAT < 41bp 1 0.218143512465549 1 0.0623067021369934 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200730036 chr1:200730028 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_26262 0 0 1 0 1 CAMSAP2 chr1:200729967 3'AG 200729967 Downstream 62bp
chr13 100188902 100188902 1 + G A LUAD 100188911 + 100188891 100188931 41 GTTACGATGTTGAAGATGGTCAGAGGTTCTGTAATCCTGGA GTTACGATGTTAAAGATGGTCAGAGGTTCTGTAATCCTGGA < 41bp 1 0.719800974739286 1 0.708781838417053 experiment 0.560398050521428 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TM9SF2 ENSG00000125304 CDS Human protein_coding chr13:100188911 chr13:100188902 nonsynonymous SNV 0.996 1 12 hm5C_associated_SNPs_26265 0 0 1 0 1 TM9SF2 chr13:100188862 3'AG 100188862 Downstream 41bp
chr19 39125691 39125691 1 + G C LUAD 39125675 + 39125655 39125695 41 GAGCAAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATCT GAGCAAATACGGCTGGAGTGCCGACGAGTCGGGGCACATCT < 41bp 1 0.240134337453579 1 0.414335250854492 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39125675 chr19:39125691 nonsynonymous SNV 0.998 1 37 hm5C_associated_SNPs_26266 0 0 1 0 2 EIF3K chr19:39125633 3'AG 39125633 Downstream 59bp
chr19 39125691 39125691 1 + G C LUAD 39125675 + 39125655 39125695 41 GAGCAAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATCT GAGCAAATACGGCTGGAGTGCCGACGAGTCGGGGCACATCT < 41bp 1 0.240134337453579 1 0.414335250854492 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39125675 chr19:39125691 nonsynonymous SNV 0.998 1 37 hm5C_associated_SNPs_26266 0 0 1 0 2 EIF3K chr19:39125758 5'GT 39125758 Upstream 68bp
chr19 39125691 39125691 1 + G C LUAD 39125679 + 39125659 39125699 41 AAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATCTTCAT AAATACGGCTGGAGTGCCGACGAGTCGGGGCACATCTTCAT < 41bp 1 0.624291596377646 1 0.515478312969208 experiment 0.751416807244709 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39125679 chr19:39125691 nonsynonymous SNV 0.998 1 33 hm5C_associated_SNPs_26267 0 0 1 0 2 EIF3K chr19:39125633 3'AG 39125633 Downstream 59bp
chr19 39125691 39125691 1 + G C LUAD 39125679 + 39125659 39125699 41 AAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATCTTCAT AAATACGGCTGGAGTGCCGACGAGTCGGGGCACATCTTCAT < 41bp 1 0.624291596377646 1 0.515478312969208 experiment 0.751416807244709 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39125679 chr19:39125691 nonsynonymous SNV 0.998 1 33 hm5C_associated_SNPs_26267 0 0 1 0 2 EIF3K chr19:39125758 5'GT 39125758 Upstream 68bp
chrX 135067822 135067822 1 + A T LUAD 135067817 + 135067797 135067837 41 GGCGGCGGAGAGGCTAGAGCCATGGACGAGGAGATCGTGTC GGCGGCGGAGAGGCTAGAGCCATGGTCGAGGAGATCGTGTC < 41bp 1 0.753951181743123 1 0.778168439865112 experiment 0.492097636513754 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135067817 chrX:135067822 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_26272 0 0 0 0 1 SLC9A6 chrX:135067762 3'AG 135067762 Downstream 61bp
chr11 71948810 71948810 1 + G C LUAD 71948820 + 71948800 71948840 41 CCCGCATCCGGGAGAGCATCCAGGAAGACCTGGCAGAGGAG CCCGCATCCGCGAGAGCATCCAGGAAGACCTGGCAGAGGAG < 41bp 1 0.766161703138401 1 0.870271444320679 experiment 0.467676593723197 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71948820 chr11:71948810 synonymous SNV 0.995 0 11 hm5C_associated_SNPs_26276 0 0 1 0 1 INPPL1 chr11:71948840 5'GT 71948840 Upstream 31bp
chr12 109547647 109547647 1 + T G LUAD 109547637 + 109547617 109547657 41 TTCTTGATCTTTTTCAGAAGCGGCACCATGTACTACAGACG TTCTTGATCTTTTTCAGAAGCGGCACCATGGACTACAGACG < 41bp 1 0.603192383882606 1 0.319119513034821 experiment 0.793615232234788 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109547637 chr12:109547647 nonsynonymous SNV 0.963 4 31 hm5C_associated_SNPs_26277 0 0 1 0 1 UNG chr12:109547634 3'AG 109547634 Downstream 14bp
chr1 22333950 22333950 1 + G T LUAD 22333953 + 22333933 22333973 41 CAGGTGGAACTGGTGGGGTTCCACCGTGAAGAAAACCATGG CAGGTGGAACTGGTGGGTTTCCACCGTGAAGAAAACCATGG < 41bp 1 0.226184568900952 1 0.381372213363647 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333953 chr1:22333950 nonsynonymous SNV 0.269 4 18 hm5C_associated_SNPs_26278 0 0 0 0 2 CELA3A chr1:22333866 3'AG 22333866 Downstream 85bp
chr1 22333950 22333950 1 + G T LUAD 22333953 + 22333933 22333973 41 CAGGTGGAACTGGTGGGGTTCCACCGTGAAGAAAACCATGG CAGGTGGAACTGGTGGGTTTCCACCGTGAAGAAAACCATGG < 41bp 1 0.226184568900952 1 0.381372213363647 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333953 chr1:22333950 nonsynonymous SNV 0.269 4 18 hm5C_associated_SNPs_26278 0 0 0 0 2 CELA3A chr1:22334008 5'GT 22334008 Upstream 59bp
chr1 22333950 22333950 1 + G T LUAD 22333956 + 22333936 22333976 41 GTGGAACTGGTGGGGTTCCACCGTGAAGAAAACCATGGTGT GTGGAACTGGTGGGTTTCCACCGTGAAGAAAACCATGGTGT < 41bp 1 0.489601375475856 1 0.529299736022949 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333956 chr1:22333950 nonsynonymous SNV 0.269 4 15 hm5C_associated_SNPs_26279 0 0 0 0 2 CELA3A chr1:22333866 3'AG 22333866 Downstream 85bp
chr1 22333950 22333950 1 + G T LUAD 22333956 + 22333936 22333976 41 GTGGAACTGGTGGGGTTCCACCGTGAAGAAAACCATGGTGT GTGGAACTGGTGGGTTTCCACCGTGAAGAAAACCATGGTGT < 41bp 1 0.489601375475856 1 0.529299736022949 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333956 chr1:22333950 nonsynonymous SNV 0.269 4 15 hm5C_associated_SNPs_26279 0 0 0 0 2 CELA3A chr1:22334008 5'GT 22334008 Upstream 59bp
chr1 22333950 22333950 1 + G T LUAD 22333957 + 22333937 22333977 41 TGGAACTGGTGGGGTTCCACCGTGAAGAAAACCATGGTGTG TGGAACTGGTGGGTTTCCACCGTGAAGAAAACCATGGTGTG < 41bp 1 0.75780263727796 1 0.815900921821594 experiment 0.484394725444079 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333957 chr1:22333950 nonsynonymous SNV 0.269 4 14 hm5C_associated_SNPs_26280 0 0 0 0 2 CELA3A chr1:22333866 3'AG 22333866 Downstream 85bp
chr1 22333950 22333950 1 + G T LUAD 22333957 + 22333937 22333977 41 TGGAACTGGTGGGGTTCCACCGTGAAGAAAACCATGGTGTG TGGAACTGGTGGGTTTCCACCGTGAAGAAAACCATGGTGTG < 41bp 1 0.75780263727796 1 0.815900921821594 experiment 0.484394725444079 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333957 chr1:22333950 nonsynonymous SNV 0.269 4 14 hm5C_associated_SNPs_26280 0 0 0 0 2 CELA3A chr1:22334008 5'GT 22334008 Upstream 59bp
chr1 22333950 22333950 1 + G T LUAD 22333968 + 22333948 22333988 41 GGGTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGT GGTTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGT < 41bp 1 0.241142917150312 1 0.367904186248779 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333968 chr1:22333950 nonsynonymous SNV 0.269 4 3 hm5C_associated_SNPs_26281 0 0 0 0 2 CELA3A chr1:22333866 3'AG 22333866 Downstream 85bp
chr1 22333950 22333950 1 + G T LUAD 22333968 + 22333948 22333988 41 GGGTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGT GGTTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGT < 41bp 1 0.241142917150312 1 0.367904186248779 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333968 chr1:22333950 nonsynonymous SNV 0.269 4 3 hm5C_associated_SNPs_26281 0 0 0 0 2 CELA3A chr1:22334008 5'GT 22334008 Upstream 59bp
chr1 22333950 22333950 1 + G T LUAD 22333969 + 22333949 22333989 41 GGTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGTA GTTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGTA < 41bp 1 0.635605882856753 1 0.266633123159409 experiment 0.728788234286493 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333969 chr1:22333950 nonsynonymous SNV 0.269 4 2 hm5C_associated_SNPs_26282 0 0 0 0 2 CELA3A chr1:22333866 3'AG 22333866 Downstream 85bp
chr1 22333950 22333950 1 + G T LUAD 22333969 + 22333949 22333989 41 GGTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGTA GTTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGTA < 41bp 1 0.635605882856753 1 0.266633123159409 experiment 0.728788234286493 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333969 chr1:22333950 nonsynonymous SNV 0.269 4 2 hm5C_associated_SNPs_26282 0 0 0 0 2 CELA3A chr1:22334008 5'GT 22334008 Upstream 59bp
chr7 142458502 142458502 1 + A T LUAD 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCTCT < 41bp 1 0.123183625186599 1 0.0491088926792145 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458502 nonsynonymous SNV 0.257 5 39 hm5C_associated_SNPs_26285 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 97bp
chr7 142458502 142458502 1 + A T LUAD 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCTCT < 41bp 1 0.123183625186599 1 0.0491088926792145 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458502 nonsynonymous SNV 0.257 5 39 hm5C_associated_SNPs_26285 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 23bp
chr7 142458502 142458502 1 + A T LUAD 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCTCT < 41bp 1 0.123183625186599 1 0.0491088926792145 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458502 nonsynonymous SNV 0.257 5 39 hm5C_associated_SNPs_26285 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 64bp
chr7 142458502 142458502 1 + A T LUAD 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCTCTT < 41bp 1 0.285361407456741 1 0.0991651117801666 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458502 nonsynonymous SNV 0.257 5 38 hm5C_associated_SNPs_26286 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 97bp
chr7 142458502 142458502 1 + A T LUAD 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCTCTT < 41bp 1 0.285361407456741 1 0.0991651117801666 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458502 nonsynonymous SNV 0.257 5 38 hm5C_associated_SNPs_26286 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 23bp
chr7 142458502 142458502 1 + A T LUAD 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCTCTT < 41bp 1 0.285361407456741 1 0.0991651117801666 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458502 nonsynonymous SNV 0.257 5 38 hm5C_associated_SNPs_26286 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 64bp
chr7 142458502 142458502 1 + A T LUAD 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCTCTTC < 41bp 1 0.712584606981259 1 0.686516642570496 experiment 0.574830786037482 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458502 nonsynonymous SNV 0.257 5 37 hm5C_associated_SNPs_26287 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 97bp
chr7 142458502 142458502 1 + A T LUAD 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCTCTTC < 41bp 1 0.712584606981259 1 0.686516642570496 experiment 0.574830786037482 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458502 nonsynonymous SNV 0.257 5 37 hm5C_associated_SNPs_26287 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 23bp
chr7 142458502 142458502 1 + A T LUAD 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCTCTTC < 41bp 1 0.712584606981259 1 0.686516642570496 experiment 0.574830786037482 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458502 nonsynonymous SNV 0.257 5 37 hm5C_associated_SNPs_26287 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 64bp
chr7 142458502 142458502 1 + A T LUAD 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG CTACCAGGTGTCCCTGAATTCTGGCTACCTCTTCTGTGGTG < 41bp 1 0.762904641745489 1 0.676141738891602 experiment 0.474190716509023 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458502 nonsynonymous SNV 0.257 5 30 hm5C_associated_SNPs_26288 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 97bp
chr7 142458502 142458502 1 + A T LUAD 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG CTACCAGGTGTCCCTGAATTCTGGCTACCTCTTCTGTGGTG < 41bp 1 0.762904641745489 1 0.676141738891602 experiment 0.474190716509023 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458502 nonsynonymous SNV 0.257 5 30 hm5C_associated_SNPs_26288 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 23bp
chr7 142458502 142458502 1 + A T LUAD 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG CTACCAGGTGTCCCTGAATTCTGGCTACCTCTTCTGTGGTG < 41bp 1 0.762904641745489 1 0.676141738891602 experiment 0.474190716509023 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458502 nonsynonymous SNV 0.257 5 30 hm5C_associated_SNPs_26288 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 64bp
chr7 142458502 142458502 1 + A T LUAD 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTGGCTACCTCTTCTGTGGTGGCTC < 41bp 1 0.0787597481104632 1 0.0370593667030334 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458502 nonsynonymous SNV 0.257 5 26 hm5C_associated_SNPs_26289 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 97bp
chr7 142458502 142458502 1 + A T LUAD 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTGGCTACCTCTTCTGTGGTGGCTC < 41bp 1 0.0787597481104632 1 0.0370593667030334 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458502 nonsynonymous SNV 0.257 5 26 hm5C_associated_SNPs_26289 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 23bp
chr7 142458502 142458502 1 + A T LUAD 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTGGCTACCTCTTCTGTGGTGGCTC < 41bp 1 0.0787597481104632 1 0.0370593667030334 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458502 nonsynonymous SNV 0.257 5 26 hm5C_associated_SNPs_26289 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 64bp
chr7 142458502 142458502 1 + A T LUAD 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTGGCTACCTCTTCTGTGGTGGCTCCCT < 41bp 1 0.0295831033146688 1 0.036129891872406 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458502 nonsynonymous SNV 0.257 5 23 hm5C_associated_SNPs_26290 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 97bp
chr7 142458502 142458502 1 + A T LUAD 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTGGCTACCTCTTCTGTGGTGGCTCCCT < 41bp 1 0.0295831033146688 1 0.036129891872406 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458502 nonsynonymous SNV 0.257 5 23 hm5C_associated_SNPs_26290 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 23bp
chr7 142458502 142458502 1 + A T LUAD 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTGGCTACCTCTTCTGTGGTGGCTCCCT < 41bp 1 0.0295831033146688 1 0.036129891872406 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458502 nonsynonymous SNV 0.257 5 23 hm5C_associated_SNPs_26290 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 64bp
chr7 142458502 142458502 1 + A T LUAD 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGGCTACCTCTTCTGTGGTGGCTCCCTC < 41bp 1 0.201553680484767 1 0.151674717664719 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458502 nonsynonymous SNV 0.257 5 22 hm5C_associated_SNPs_26291 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 97bp
chr7 142458502 142458502 1 + A T LUAD 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGGCTACCTCTTCTGTGGTGGCTCCCTC < 41bp 1 0.201553680484767 1 0.151674717664719 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458502 nonsynonymous SNV 0.257 5 22 hm5C_associated_SNPs_26291 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 23bp
chr7 142458502 142458502 1 + A T LUAD 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGGCTACCTCTTCTGTGGTGGCTCCCTC < 41bp 1 0.201553680484767 1 0.151674717664719 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458502 nonsynonymous SNV 0.257 5 22 hm5C_associated_SNPs_26291 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 64bp
chr7 142458502 142458502 1 + A T LUAD 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGCTACCTCTTCTGTGGTGGCTCCCTCAT < 41bp 1 0.375950684054552 1 0.419716477394104 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458502 nonsynonymous SNV 0.257 5 20 hm5C_associated_SNPs_26292 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 97bp
chr7 142458502 142458502 1 + A T LUAD 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGCTACCTCTTCTGTGGTGGCTCCCTCAT < 41bp 1 0.375950684054552 1 0.419716477394104 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458502 nonsynonymous SNV 0.257 5 20 hm5C_associated_SNPs_26292 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 23bp
chr7 142458502 142458502 1 + A T LUAD 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGCTACCTCTTCTGTGGTGGCTCCCTCAT < 41bp 1 0.375950684054552 1 0.419716477394104 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458502 nonsynonymous SNV 0.257 5 20 hm5C_associated_SNPs_26292 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 64bp
chr7 142458502 142458502 1 + A T LUAD 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGGCTACCTCTTCTGTGGTGGCTCCCTCATCAA < 41bp 1 0.659619792016166 1 0.446258842945099 experiment 0.680760415967669 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458502 nonsynonymous SNV 0.257 5 17 hm5C_associated_SNPs_26293 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 97bp
chr7 142458502 142458502 1 + A T LUAD 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGGCTACCTCTTCTGTGGTGGCTCCCTCATCAA < 41bp 1 0.659619792016166 1 0.446258842945099 experiment 0.680760415967669 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458502 nonsynonymous SNV 0.257 5 17 hm5C_associated_SNPs_26293 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 23bp
chr7 142458502 142458502 1 + A T LUAD 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGGCTACCTCTTCTGTGGTGGCTCCCTCATCAA < 41bp 1 0.659619792016166 1 0.446258842945099 experiment 0.680760415967669 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458502 nonsynonymous SNV 0.257 5 17 hm5C_associated_SNPs_26293 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 64bp
chr7 142458502 142458502 1 + A T LUAD 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCTCTTCTGTGGTGGCTCCCTCATCAACGAACAGTG < 41bp 1 0.267367079476232 1 0.101351976394653 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458502 nonsynonymous SNV 0.257 5 8 hm5C_associated_SNPs_26294 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 97bp
chr7 142458502 142458502 1 + A T LUAD 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCTCTTCTGTGGTGGCTCCCTCATCAACGAACAGTG < 41bp 1 0.267367079476232 1 0.101351976394653 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458502 nonsynonymous SNV 0.257 5 8 hm5C_associated_SNPs_26294 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 23bp
chr7 142458502 142458502 1 + A T LUAD 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCTCTTCTGTGGTGGCTCCCTCATCAACGAACAGTG < 41bp 1 0.267367079476232 1 0.101351976394653 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458502 nonsynonymous SNV 0.257 5 8 hm5C_associated_SNPs_26294 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 64bp
chr7 142458502 142458502 1 + A T LUAD 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCTCTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG < 41bp 1 0.0796661182722029 1 0.0487060546875 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458502 nonsynonymous SNV 0.257 5 6 hm5C_associated_SNPs_26295 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 97bp
chr7 142458502 142458502 1 + A T LUAD 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCTCTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG < 41bp 1 0.0796661182722029 1 0.0487060546875 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458502 nonsynonymous SNV 0.257 5 6 hm5C_associated_SNPs_26295 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 23bp
chr7 142458502 142458502 1 + A T LUAD 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCTCTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG < 41bp 1 0.0796661182722029 1 0.0487060546875 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458502 nonsynonymous SNV 0.257 5 6 hm5C_associated_SNPs_26295 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 64bp
chr7 142458502 142458502 1 + A T LUAD 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCTCTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT < 41bp 1 0.128617584559535 1 0.0725378692150116 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458502 nonsynonymous SNV 0.257 5 5 hm5C_associated_SNPs_26296 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 97bp
chr7 142458502 142458502 1 + A T LUAD 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCTCTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT < 41bp 1 0.128617584559535 1 0.0725378692150116 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458502 nonsynonymous SNV 0.257 5 5 hm5C_associated_SNPs_26296 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 23bp
chr7 142458502 142458502 1 + A T LUAD 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCTCTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT < 41bp 1 0.128617584559535 1 0.0725378692150116 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458502 nonsynonymous SNV 0.257 5 5 hm5C_associated_SNPs_26296 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 64bp
chr7 142458502 142458502 1 + A T LUAD 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCTCTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG < 41bp 1 0.397134490899989 1 0.162282317876816 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458502 nonsynonymous SNV 0.257 5 4 hm5C_associated_SNPs_26297 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 97bp
chr7 142458502 142458502 1 + A T LUAD 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCTCTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG < 41bp 1 0.397134490899989 1 0.162282317876816 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458502 nonsynonymous SNV 0.257 5 4 hm5C_associated_SNPs_26297 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 23bp
chr7 142458502 142458502 1 + A T LUAD 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCTCTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG < 41bp 1 0.397134490899989 1 0.162282317876816 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458502 nonsynonymous SNV 0.257 5 4 hm5C_associated_SNPs_26297 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 64bp
chr7 142458502 142458502 1 + A T LUAD 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CTCTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT < 41bp 1 0.52676239836844 1 0.659349501132965 experiment 0.94647520326312 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458502 nonsynonymous SNV 0.257 5 2 hm5C_associated_SNPs_26298 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 97bp
chr7 142458502 142458502 1 + A T LUAD 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CTCTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT < 41bp 1 0.52676239836844 1 0.659349501132965 experiment 0.94647520326312 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458502 nonsynonymous SNV 0.257 5 2 hm5C_associated_SNPs_26298 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 23bp
chr7 142458502 142458502 1 + A T LUAD 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CTCTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT < 41bp 1 0.52676239836844 1 0.659349501132965 experiment 0.94647520326312 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458502 nonsynonymous SNV 0.257 5 2 hm5C_associated_SNPs_26298 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 64bp
chr17 29554590 29554590 1 + T A LUAD 29554583 + 29554563 29554603 41 AATGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA AATGGGAACAAGCAACAAAGCTAATCCATAACTATCCAAAA < 41bp 1 0.123400347122193 1 0.0754722654819489 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29554583 chr17:29554590 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_26299 0 0 1 0 2 NF1 chr17:29554541 3'AG 29554541 Downstream 50bp
chr17 29554590 29554590 1 + T A LUAD 29554583 + 29554563 29554603 41 AATGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA AATGGGAACAAGCAACAAAGCTAATCCATAACTATCCAAAA < 41bp 1 0.123400347122193 1 0.0754722654819489 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29554583 chr17:29554590 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_26299 0 0 1 0 2 NF1 chr17:29554624 5'GT 29554624 Upstream 35bp
chr12 53427591 53427591 1 + T C LUAD 53427592 + 53427572 53427612 41 AAGTTTCATTTAACTTAGGTCCCCCCCAAAGACCCAAACTG AAGTTTCATTTAACTTAGGCCCCCCCCAAAGACCCAAACTG < 41bp 1 0.0324027989849194 1 0.080089658498764 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53427592 chr12:53427591 synonymous SNV . 0 20 hm5C_associated_SNPs_26300 0 0 1 0 1 EIF4B chr12:53427590 3'AG 53427590 Downstream 2bp
chr5 70818760 70818760 1 + C T LUAD 70818769 + 70818749 70818789 41 AAGAGCAATATCTCAATAAACTAACAAGGTAACATTTTATT AAGAGCAATATTTCAATAAACTAACAAGGTAACATTTTATT < 41bp 1 0.0839834388002133 1 0.0887843072414398 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BDP1 ENSG00000145734 CDS Human protein_coding chr5:70818769 chr5:70818760 nonsynonymous SNV 0.006 0 12 hm5C_associated_SNPs_26301 0 0 1 0 1 BDP1 chr5:70818776 5'GT 70818776 Upstream 17bp
chr6 52288786 52288786 1 + G T LUAD 52288769 + 52288749 52288789 41 AGCCTTCCACAGAAGTCAGACGCTGAGCTACAGGAACGGCT AGCCTTCCACAGAAGTCAGACGCTGAGCTACAGGAACTGCT < 41bp 1 0.241576546617004 1 0.327680468559265 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52288769 chr6:52288786 nonsynonymous SNV 0.995 4 38 hm5C_associated_SNPs_26303 0 0 1 0 2 EFHC1 chr6:52288744 3'AG 52288744 Downstream 43bp
chr6 52288786 52288786 1 + G T LUAD 52288769 + 52288749 52288789 41 AGCCTTCCACAGAAGTCAGACGCTGAGCTACAGGAACGGCT AGCCTTCCACAGAAGTCAGACGCTGAGCTACAGGAACTGCT < 41bp 1 0.241576546617004 1 0.327680468559265 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52288769 chr6:52288786 nonsynonymous SNV 0.995 4 38 hm5C_associated_SNPs_26303 0 0 1 0 2 EFHC1 chr6:52288879 5'GT 52288879 Upstream 94bp
chr18 61648985 61648985 1 + C T LUAD 61648969 + 61648949 61648989 41 TTGCAGGACTTTAAAGAATACTGTCAGAAGTTCTATCAGGC TTGCAGGACTTTAAAGAATACTGTCAGAAGTTCTATTAGGC < 41bp 1 0.158477327339797 1 0.133378893136978 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61648969 chr18:61648985 stopgain 0.772 0 37 hm5C_associated_SNPs_26305 0 0 0 0 1 SERPINB8 chr18:61648955 3'AG 61648955 Downstream 31bp
chrX 107834438 107834438 1 + C A LUAD 107834422 + 107834402 107834442 41 AGCCTGGGGCTCCTGGGCTTCCAGGGCCTCCTGGCCCTGCT AGCCTGGGGCTCCTGGGCTTCCAGGGCCTCCTGGCCATGCT < 41bp 1 0.588183323439754 1 0.857790410518646 experiment 0.823633353120491 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107834422 chrX:107834438 nonsynonymous SNV 0.844 2 37 hm5C_associated_SNPs_26306 0 0 1 0 1 COL4A5 chrX:107834461 5'GT 107834461 Upstream 24bp
chr11 314316 314316 1 + G A LUAD 314324 + 314304 314344 41 TCTTCTTGAACTGGTGCTGTCTGGGCTTCATAGCATTCGCC TCTTCTTGAACTAGTGCTGTCTGGGCTTCATAGCATTCGCC < 41bp 1 0.75470729351152 1 0.363445580005646 experiment 0.490585412976959 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control IFITM1 ENSG00000185885 CDS Human protein_coding chr11:314324 chr11:314316 stopgain 0.013 0 13 hm5C_associated_SNPs_26307 0 0 1 0 1 IFITM1 chr11:314356 5'GT 314356 Upstream 41bp
chrX 148628315 148628315 1 + G T LUAD 148628325 + 148628305 148628345 41 ACTTTGCAATGCCCCGAAGACTTAACTCCCGATGAGGTTGT ACTTTGCAATTCCCCGAAGACTTAACTCCCGATGAGGTTGT < 41bp 1 0.364958012517624 1 0.100856930017471 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CXorf40A ENSG00000197620 CDS Human protein_coding chrX:148628325 chrX:148628315 nonsynonymous SNV 0.067 2 11 hm5C_associated_SNPs_26308 0 0 0 0 1 CXorf40A chrX:148628285 3'AG 148628285 Downstream 31bp
chr16 2106212 2106212 1 + G C LUAD 2106203 + 2106183 2106223 41 GGTGCTCCCTGCAGGATGATCTGTCTGCTGTGCGTCCGGAC GGTGCTCCCTGCAGGATGATCTGTCTGCTCTGCGTCCGGAC < 41bp 1 0.294455408891048 1 0.155894190073013 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2106203 chr16:2106212 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_26309 0 0 1 0 2 TSC2 chr16:2106197 3'AG 2106197 Downstream 16bp
chr16 2106212 2106212 1 + G C LUAD 2106203 + 2106183 2106223 41 GGTGCTCCCTGCAGGATGATCTGTCTGCTGTGCGTCCGGAC GGTGCTCCCTGCAGGATGATCTGTCTGCTCTGCGTCCGGAC < 41bp 1 0.294455408891048 1 0.155894190073013 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2106203 chr16:2106212 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_26309 0 0 1 0 2 TSC2 chr16:2106245 5'GT 2106245 Upstream 34bp
chr3 38022323 38022323 1 + G A LUAD 38022310 + 38022290 38022330 41 CCCTTCTTTGAGGGCCTGAGCCGGGAGGACGACGTGTACAG CCCTTCTTTGAGGGCCTGAGCCGGGAGGACGACATGTACAG < 41bp 1 0.734506683924317 1 0.725567519664764 experiment 0.530986632151366 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CTDSPL ENSG00000144677 CDS Human protein_coding chr3:38022310 chr3:38022323 nonsynonymous SNV 0.997 4 34 hm5C_associated_SNPs_26310 0 0 1 0 1 CTDSPL chr3:38022233 3'AG 38022233 Downstream 91bp
chr1 76255022 76255022 1 + A T LUAD 76255012 + 76254992 76255032 41 CTAGTATCGGACATGATCCTCATCTTTTATACACTCTTAGT CTAGTATCGGACATGATCCTCATCTTTTATTCACTCTTAGT < 41bp 1 0.193446105573816 1 0.0396080017089844 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76255012 chr1:76255022 nonsynonymous SNV 0.997 4 31 hm5C_associated_SNPs_26312 0 0 1 1 1 RABGGTB chr1:76255041 5'GT 76255041 Upstream 20bp
chr11 67052428 67052428 1 + G T LUAD 67052434 + 67052414 67052454 41 TCCCCAACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCCCG TCCCCAACCGCCTCTAGTGGCGGGGCGAGGGCGAGGCCCCG < 41bp 1 0.764009305203749 1 0.938717007637024 experiment 0.471981389592503 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052434 chr11:67052428 stopgain 0.829 0 15 hm5C_associated_SNPs_26313 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 27bp
chr11 67052428 67052428 1 + G T LUAD 67052439 + 67052419 67052459 41 AACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCCCGGTAAG AACCGCCTCTAGTGGCGGGGCGAGGGCGAGGCCCCGGTAAG < 41bp 1 0.651376201377979 1 0.891974687576294 experiment 0.697247597244041 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052439 chr11:67052428 stopgain 0.829 0 10 hm5C_associated_SNPs_26314 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 27bp
chr7 101459331 101459331 1 + G C LUAD 101459315 + 101459295 101459335 41 CTCAATATGTCTCAAGATGGCGGCCAATGTGGGATCGATGT CTCAATATGTCTCAAGATGGCGGCCAATGTGGGATCCATGT < 41bp 1 0.118986008688794 1 0.255511224269867 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101459315 chr7:101459331 synonymous SNV . 0 37 hm5C_associated_SNPs_26315 0 0 1 0 1 CUX1 chr7:101459373 5'GT 101459373 Upstream 43bp
chr1 874763 874763 1 + G A LUAD 874779 + 874759 874799 41 CAGCGCCTCTACCACCTGGGCCTCCCCAGCCACGGTGAGGA CAGCACCTCTACCACCTGGGCCTCCCCAGCCACGGTGAGGA < 41bp 1 0.0755854360367671 1 0.062049001455307 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874779 chr1:874763 nonsynonymous SNV 0.960 3 5 hm5C_associated_SNPs_26316 0 0 0 0 2 SAMD11 chr1:874792 5'GT 874792 Upstream 30bp
chr1 874763 874763 1 + G A LUAD 874779 + 874759 874799 41 CAGCGCCTCTACCACCTGGGCCTCCCCAGCCACGGTGAGGA CAGCACCTCTACCACCTGGGCCTCCCCAGCCACGGTGAGGA < 41bp 1 0.0755854360367671 1 0.062049001455307 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874779 chr1:874763 nonsynonymous SNV 0.960 3 5 hm5C_associated_SNPs_26316 0 0 0 0 2 SAMD11 chr1:874840 5'GT 874840 Upstream 78bp
chr20 1905416 1905416 1 + C T LUAD 1905422 + 1905402 1905442 41 GTCCCTAGAGAACACTGGATCTAATGAACGGAACATCTATA GTCCCTAGAGAACATTGGATCTAATGAACGGAACATCTATA < 41bp 1 0.139035193790671 1 0.036724865436554 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1905422 chr20:1905416 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_26318 0 0 0 0 1 SIRPA chr20:1905410 3'AG 1905410 Downstream 7bp
chr18 641426 641426 1 + G A LUAD 641423 + 641403 641443 41 TGGCCAGATTCTCCAGATGACCCGGAAGCACTTGGAGGACA TGGCCAGATTCTCCAGATGACCCAGAAGCACTTGGAGGACA < 41bp 1 0.43740418416594 1 0.0471773147583008 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CLUL1 ENSG00000079101 CDS Human protein_coding chr18:641423 chr18:641426 nonsynonymous SNV 0.637 0 24 hm5C_associated_SNPs_26326 0 0 0 0 1 CLUL1 chr18:641327 3'AG 641327 Downstream 100bp
chr10 104157747 104157747 1 + G A LUAD 104157753 + 104157733 104157773 41 CATAGAATCTCCGGGGGCATCAAACCTGAAGATTTCTCGAA CATAGAATCTCCGGAGGCATCAAACCTGAAGATTTCTCGAA < 41bp 1 0.236784970757438 1 0.603858530521393 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104157753 chr10:104157747 nonsynonymous SNV 0.038 4 15 hm5C_associated_SNPs_26327 0 0 1 0 2 NFKB2 chr10:104157738 3'AG 104157738 Downstream 10bp
chr10 104157747 104157747 1 + G A LUAD 104157753 + 104157733 104157773 41 CATAGAATCTCCGGGGGCATCAAACCTGAAGATTTCTCGAA CATAGAATCTCCGGAGGCATCAAACCTGAAGATTTCTCGAA < 41bp 1 0.236784970757438 1 0.603858530521393 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104157753 chr10:104157747 nonsynonymous SNV 0.038 4 15 hm5C_associated_SNPs_26327 0 0 1 0 2 NFKB2 chr10:104157842 5'GT 104157842 Upstream 96bp
chr17 78219001 78219001 1 + C A LUAD 78218997 + 78218977 78219017 41 GTCTTGCCTCCTCCCCAGGTCTCACCAACATGTTGGGCTCC GTCTTGCCTCCTCCCCAGGTCTCAACAACATGTTGGGCTCC < 41bp 1 0.464370780797982 1 0.755250453948975 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78218997 chr17:78219001 nonsynonymous SNV 0.961 4 25 hm5C_associated_SNPs_26328 0 0 0 0 2 SLC26A11 chr17:78218995 3'AG 78218995 Downstream 7bp
chr17 78219001 78219001 1 + C A LUAD 78218997 + 78218977 78219017 41 GTCTTGCCTCCTCCCCAGGTCTCACCAACATGTTGGGCTCC GTCTTGCCTCCTCCCCAGGTCTCAACAACATGTTGGGCTCC < 41bp 1 0.464370780797982 1 0.755250453948975 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78218997 chr17:78219001 nonsynonymous SNV 0.961 4 25 hm5C_associated_SNPs_26328 0 0 0 0 2 SLC26A11 chr17:78219055 5'GT 78219055 Upstream 55bp
chr11 67818087 67818087 1 + G A LUAD 67818104 + 67818084 67818124 41 GGTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGC GGTAATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGC < 41bp 1 0.036477477013701 1 0.526453614234924 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818104 chr11:67818087 synonymous SNV . 0 4 hm5C_associated_SNPs_26330 0 0 1 0 1 TCIRG1 chr11:67818131 5'GT 67818131 Upstream 45bp
chr11 67818087 67818087 1 + G A LUAD 67818105 + 67818085 67818125 41 GTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGCT GTAATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGCT < 41bp 1 0.142215045007049 1 0.509085178375244 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818105 chr11:67818087 synonymous SNV . 0 3 hm5C_associated_SNPs_26331 0 0 1 0 1 TCIRG1 chr11:67818131 5'GT 67818131 Upstream 45bp
chr9 36633175 36633175 1 + T C LUAD 36633167 + 36633147 36633187 41 TGGATCATGCAAGATTACAACTATCCTGTTGAGTGGCAAAG TGGATCATGCAAGATTACAACTATCCTGCTGAGTGGCAAAG < 41bp 1 0.12349299019693 1 0.039573460817337 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MELK ENSG00000165304 CDS Human protein_coding chr9:36633167 chr9:36633175 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_26332 0 0 1 0 2 MELK chr9:36633099 3'AG 36633099 Downstream 77bp
chr9 36633175 36633175 1 + T C LUAD 36633167 + 36633147 36633187 41 TGGATCATGCAAGATTACAACTATCCTGTTGAGTGGCAAAG TGGATCATGCAAGATTACAACTATCCTGCTGAGTGGCAAAG < 41bp 1 0.12349299019693 1 0.039573460817337 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MELK ENSG00000165304 CDS Human protein_coding chr9:36633167 chr9:36633175 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_26332 0 0 1 0 2 MELK chr9:36633197 5'GT 36633197 Upstream 23bp
chr5 82868259 82868259 1 + C A LUAD 82868273 + 82868253 82868293 41 CCCAACCAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTG CCCAACAAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTG < 41bp 1 0.034282876218703 1 0.0305226445198059 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82868273 chr5:82868259 nonsynonymous SNV 0.998 4 7 hm5C_associated_SNPs_26334 0 0 1 0 1 VCAN chr5:82868235 3'AG 82868235 Downstream 25bp
chr5 82868259 82868259 1 + C A LUAD 82868278 + 82868258 82868298 41 CCAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTGTGTTG CAAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTGTGTTG < 41bp 1 0.47969610502974 1 0.634069442749023 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82868278 chr5:82868259 nonsynonymous SNV 0.998 4 2 hm5C_associated_SNPs_26335 0 0 1 0 1 VCAN chr5:82868235 3'AG 82868235 Downstream 25bp
chr19 41111393 41111393 1 + C T LUAD 41111411 + 41111391 41111431 41 GGCCCTTGGGAGGAGGCGGACGCTGAGGCGGTGGCGCGGGC GGTCCTTGGGAGGAGGCGGACGCTGAGGCGGTGGCGCGGGC < 41bp 1 0.64168613843597 1 0.56363320350647 experiment 0.71662772312806 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41111411 chr19:41111393 synonymous SNV . 0 3 hm5C_associated_SNPs_26336 0 0 1 0 1 LTBP4 chr19:41111311 3'AG 41111311 Downstream 83bp
chr11 988579 988579 1 + C T LUAD 988594 + 988574 988614 41 GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGCGACCGC GGCAGTGGGCCGTGGACCTCCTCTACGCCATGTGCGACCGC < 41bp 1 0.735072725204172 1 0.563529133796692 experiment 0.529854549591656 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:988594 chr11:988579 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_26337 0 0 1 0 1 AP2A2 chr11:988552 3'AG 988552 Downstream 28bp
chr12 52695778 52695778 1 + C A LUAD 52695783 + 52695763 52695803 41 GCCCGGCCGCTGCTGCATCACCGCCGCCCCCTACCGTGGCA GCCCGGCCGCTGCTGAATCACCGCCGCCCCCTACCGTGGCA < 41bp 1 0.472910048604214 1 0.217213302850723 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KRT86 ENSG00000170442 CDS Human protein_coding chr12:52695783 chr12:52695778 stopgain 0.982 0 16 hm5C_associated_SNPs_26340 0 0 0 0 1 KRT86 chr12:52695697 3'AG 52695697 Downstream 82bp
chrX 48457261 48457261 1 + C A LUAD 48457256 + 48457236 48457276 41 GGGGGCAGCTGCTGGGCCAGCGCTACGGGCCCCTCTCCGAG GGGGGCAGCTGCTGGGCCAGCGCTAAGGGCCCCTCTCCGAG < 41bp 1 0.743694748159546 1 0.553169131278992 experiment 0.512610503680908 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457256 chrX:48457261 stopgain 1.000 1 26 hm5C_associated_SNPs_26342 0 0 1 0 1 WDR13 chrX:48457345 5'GT 48457345 Upstream 85bp
chrX 48457261 48457261 1 + C A LUAD 48457272 + 48457252 48457292 41 CCAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTG CCAGCGCTAAGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTG < 41bp 1 0.624391422269596 1 0.848430335521698 experiment 0.751217155460808 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457272 chrX:48457261 stopgain 1.000 1 10 hm5C_associated_SNPs_26343 0 0 1 0 1 WDR13 chrX:48457345 5'GT 48457345 Upstream 85bp
chrX 48457261 48457261 1 + C A LUAD 48457273 + 48457253 48457293 41 CAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTGC CAGCGCTAAGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTGC < 41bp 1 0.629886698895888 1 0.341738969087601 experiment 0.740226602208223 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457273 chrX:48457261 stopgain 1.000 1 9 hm5C_associated_SNPs_26344 0 0 1 0 1 WDR13 chrX:48457345 5'GT 48457345 Upstream 85bp
chr5 34929952 34929952 1 + G C LUAD 34929944 + 34929924 34929964 41 GATGAAGTGTCACTATGAGGCGCTGGGGGTGCGGCGCGACG GATGAAGTGTCACTATGAGGCGCTGGGGCTGCGGCGCGACG < 41bp 1 0.722000617870123 1 0.384455859661102 experiment 0.555998764259753 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34929944 chr5:34929952 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_26352 0 0 1 0 1 DNAJC21 chr5:34930021 5'GT 34930021 Upstream 70bp
chr5 34929952 34929952 1 + G C LUAD 34929960 + 34929940 34929980 41 GAGGCGCTGGGGGTGCGGCGCGACGCCAGCGAGGAGGAGCT GAGGCGCTGGGGCTGCGGCGCGACGCCAGCGAGGAGGAGCT < 41bp 1 0.671508427213467 1 0.30105048418045 experiment 0.656983145573066 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34929960 chr5:34929952 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_26353 0 0 1 0 1 DNAJC21 chr5:34930021 5'GT 34930021 Upstream 70bp
chr5 34929952 34929952 1 + G C LUAD 34929965 + 34929945 34929985 41 GCTGGGGGTGCGGCGCGACGCCAGCGAGGAGGAGCTCAAGA GCTGGGGCTGCGGCGCGACGCCAGCGAGGAGGAGCTCAAGA < 41bp 1 0.613792571142353 1 0.554490208625793 experiment 0.772414857715295 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34929965 chr5:34929952 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_26354 0 0 1 0 1 DNAJC21 chr5:34930021 5'GT 34930021 Upstream 70bp
chr1 145507688 145507688 1 + C T LUAD 145507671 + 145507651 145507691 41 CTCGATCGAAGGCGAGATGGCGGACGTGCTAGATCTTCACG CTCGATCGAAGGCGAGATGGCGGACGTGCTAGATCTTTACG < 41bp 1 0.247479538601207 1 0.250316202640533 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RBM8A ENSG00000131795 CDS Human other chr1:145507671 chr1:145507688 nonsynonymous SNV . 0 38 hm5C_associated_SNPs_26356 0 0 1 0 1 RBM8A chr1:145507733 5'GT 145507733 Upstream 46bp
chr7 114655761 114655761 1 + C T LUAD 114655752 + 114655732 114655772 41 GAAAATGAAGATTGTTGTGTCCACTGTATCCTGGCTTGCTT GAAAATGAAGATTGTTGTGTCCACTGTATTCTGGCTTGCTT < 41bp 1 0.16038528745748 1 0.0884399712085724 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MDFIC ENSG00000135272 CDS Human protein_coding chr7:114655752 chr7:114655761 synonymous SNV . 0 30 hm5C_associated_SNPs_26357 0 0 1 0 1 MDFIC chr7:114655742 3'AG 114655742 Downstream 20bp
chr7 114655761 114655761 1 + C T LUAD 114655776 + 114655756 114655796 41 TGTATCCTGGCTTGCTTGTTCTGCGAATTCCTGACCCTTTG TGTATTCTGGCTTGCTTGTTCTGCGAATTCCTGACCCTTTG < 41bp 1 0.794049908323658 1 0.374408960342407 experiment 0.411900183352685 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MDFIC ENSG00000135272 CDS Human protein_coding chr7:114655776 chr7:114655761 synonymous SNV . 0 6 hm5C_associated_SNPs_26358 0 0 1 0 1 MDFIC chr7:114655742 3'AG 114655742 Downstream 20bp
chr9 37424918 37424918 1 + G T LUAD 37424932 + 37424912 37424952 41 GCCCACGGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAA GCCCACTGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAA < 41bp 1 0.155403900971361 1 0.0620381534099579 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424932 chr9:37424918 nonsynonymous SNV 0.875 5 7 hm5C_associated_SNPs_26359 0 0 1 0 2 GRHPR chr9:37424842 3'AG 37424842 Downstream 77bp
chr9 37424918 37424918 1 + G T LUAD 37424932 + 37424912 37424952 41 GCCCACGGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAA GCCCACTGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAA < 41bp 1 0.155403900971361 1 0.0620381534099579 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424932 chr9:37424918 nonsynonymous SNV 0.875 5 7 hm5C_associated_SNPs_26359 0 0 1 0 2 GRHPR chr9:37424972 5'GT 37424972 Upstream 55bp
chr9 37424918 37424918 1 + G T LUAD 37424937 + 37424917 37424957 41 CGGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAGGA CTGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAGGA < 41bp 1 0.191337962522643 1 0.681494295597076 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424937 chr9:37424918 nonsynonymous SNV 0.875 5 2 hm5C_associated_SNPs_26360 0 0 1 0 2 GRHPR chr9:37424842 3'AG 37424842 Downstream 77bp
chr9 37424918 37424918 1 + G T LUAD 37424937 + 37424917 37424957 41 CGGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAGGA CTGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAGGA < 41bp 1 0.191337962522643 1 0.681494295597076 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424937 chr9:37424918 nonsynonymous SNV 0.875 5 2 hm5C_associated_SNPs_26360 0 0 1 0 2 GRHPR chr9:37424972 5'GT 37424972 Upstream 55bp
chr9 37424918 37424918 1 + G T LUAD 37424938 + 37424918 37424958 41 GGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAGGAT TGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAGGAT < 41bp 1 0.264671511728635 1 0.48793625831604 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424938 chr9:37424918 nonsynonymous SNV 0.875 5 1 hm5C_associated_SNPs_26361 0 0 1 0 2 GRHPR chr9:37424842 3'AG 37424842 Downstream 77bp
chr9 37424918 37424918 1 + G T LUAD 37424938 + 37424918 37424958 41 GGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAGGAT TGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAGGAT < 41bp 1 0.264671511728635 1 0.48793625831604 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424938 chr9:37424918 nonsynonymous SNV 0.875 5 1 hm5C_associated_SNPs_26361 0 0 1 0 2 GRHPR chr9:37424972 5'GT 37424972 Upstream 55bp
chr11 67049199 67049199 1 + G C LUAD 67049189 + 67049169 67049209 41 AAGCTCAGCTTCATCCTGGACCTCATGAACGGTGAGTGCTG AAGCTCAGCTTCATCCTGGACCTCATGAACCGTGAGTGCTG < 41bp 1 0.163054723265475 1 0.0128652155399323 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67049189 chr11:67049199 nonsynonymous SNV 0.973 3 31 hm5C_associated_SNPs_26365 0 0 1 0 2 GRK2 chr11:67049121 3'AG 67049121 Downstream 79bp
chr11 67049199 67049199 1 + G C LUAD 67049189 + 67049169 67049209 41 AAGCTCAGCTTCATCCTGGACCTCATGAACGGTGAGTGCTG AAGCTCAGCTTCATCCTGGACCTCATGAACCGTGAGTGCTG < 41bp 1 0.163054723265475 1 0.0128652155399323 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67049189 chr11:67049199 nonsynonymous SNV 0.973 3 31 hm5C_associated_SNPs_26365 0 0 1 0 2 GRK2 chr11:67049199 5'GT 67049199 Upstream 1bp
chr16 2122317 2122317 1 + A T LUAD 2122321 + 2122301 2122341 41 TAAAGTGCTCATCTTTACTTCCCCTTGCAGTGTGGACCAGC TAAAGTGCTCATCTTTTCTTCCCCTTGCAGTGTGGACCAGC < 41bp 1 0.119428305258882 1 0.034792572259903 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2122321 chr16:2122317 nonsynonymous SNV 0.737 4 17 hm5C_associated_SNPs_26366 0 0 1 0 2 TSC2 chr16:2122242 3'AG 2122242 Downstream 76bp
chr16 2122317 2122317 1 + A T LUAD 2122321 + 2122301 2122341 41 TAAAGTGCTCATCTTTACTTCCCCTTGCAGTGTGGACCAGC TAAAGTGCTCATCTTTTCTTCCCCTTGCAGTGTGGACCAGC < 41bp 1 0.119428305258882 1 0.034792572259903 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2122321 chr16:2122317 nonsynonymous SNV 0.737 4 17 hm5C_associated_SNPs_26366 0 0 1 0 2 TSC2 chr16:2122364 5'GT 2122364 Upstream 48bp
chr1 100757055 100757055 1 + C T LUAD 100757044 + 100757024 100757064 41 ATGCCAAGGAATTGGGATGACAAATCCAAATCTATAGAGTA ATGCCAAGGAATTGGGATGACAAATCCAAATTTATAGAGTA < 41bp 1 0.314991562304775 1 0.474586337804794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RTCA ENSG00000137996 CDS Human protein_coding chr1:100757044 chr1:100757055 synonymous SNV . 0 32 hm5C_associated_SNPs_26367 0 0 1 0 1 RTCA chr1:100756959 3'AG 100756959 Downstream 97bp
chr12 27835625 27835625 1 + T G LUAD 27835622 + 27835602 27835642 41 GGGTTGATGGTCGAATGCTACATTACATGACTGTTGTAAGT GGGTTGATGGTCGAATGCTACATGACATGACTGTTGTAAGT < 41bp 1 0.543283111862944 1 0.43330854177475 experiment 0.913433776274111 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27835622 chr12:27835625 nonsynonymous SNV 0.988 3 24 hm5C_associated_SNPs_26368 0 0 0 0 2 PPFIBP1 chr12:27835548 3'AG 27835548 Downstream 78bp
chr12 27835625 27835625 1 + T G LUAD 27835622 + 27835602 27835642 41 GGGTTGATGGTCGAATGCTACATTACATGACTGTTGTAAGT GGGTTGATGGTCGAATGCTACATGACATGACTGTTGTAAGT < 41bp 1 0.543283111862944 1 0.43330854177475 experiment 0.913433776274111 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27835622 chr12:27835625 nonsynonymous SNV 0.988 3 24 hm5C_associated_SNPs_26368 0 0 0 0 2 PPFIBP1 chr12:27835636 5'GT 27835636 Upstream 12bp
chr11 4142904 4142904 1 + A C LUAD 4142908 + 4142888 4142928 41 TTCCTTGATTTAAAGAAGAACACAGGAAAGGAAGAGCAGCG TTCCTTGATTTAAAGACGAACACAGGAAAGGAAGAGCAGCG < 41bp 1 0.397189905481725 1 0.315557420253754 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRM1 ENSG00000167325 CDS Human protein_coding chr11:4142908 chr11:4142904 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_26374 0 0 1 0 1 RRM1 chr11:4142995 5'GT 4142995 Upstream 92bp
chr11 4142904 4142904 1 + A C LUAD 4142924 + 4142904 4142944 41 AGAACACAGGAAAGGAAGAGCAGCGTGCCAGAGATCTTTTC CGAACACAGGAAAGGAAGAGCAGCGTGCCAGAGATCTTTTC < 41bp 1 0.59015100169609 1 0.506074249744415 experiment 0.819697996607821 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RRM1 ENSG00000167325 CDS Human protein_coding chr11:4142924 chr11:4142904 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_26375 0 0 1 0 1 RRM1 chr11:4142995 5'GT 4142995 Upstream 92bp
chr12 109539761 109539761 1 + G C LUAD 109539764 + 109539744 109539784 41 GACCTAATCAAGCTCACGGGCTCTGCTTTAGTGTTCAAAGG GACCTAATCAAGCTCACCGGCTCTGCTTTAGTGTTCAAAGG < 41bp 1 0.303863763455736 1 0.385829716920853 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109539764 chr12:109539761 nonsynonymous SNV 0.935 5 18 hm5C_associated_SNPs_26376 0 0 1 0 2 UNG chr12:109539707 3'AG 109539707 Downstream 55bp
chr12 109539761 109539761 1 + G C LUAD 109539764 + 109539744 109539784 41 GACCTAATCAAGCTCACGGGCTCTGCTTTAGTGTTCAAAGG GACCTAATCAAGCTCACCGGCTCTGCTTTAGTGTTCAAAGG < 41bp 1 0.303863763455736 1 0.385829716920853 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109539764 chr12:109539761 nonsynonymous SNV 0.935 5 18 hm5C_associated_SNPs_26376 0 0 1 0 2 UNG chr12:109539804 5'GT 109539804 Upstream 44bp
chr12 78520969 78520969 1 + C G LUAD 78520959 + 78520939 78520979 41 TTTAACAGCATGCAGCTTGACAGAAATACACTACCCAAAAA TTTAACAGCATGCAGCTTGACAGAAATACAGTACCCAAAAA < 41bp 1 0.392111900150689 1 0.236918300390244 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAV3 ENSG00000067798 CDS Human protein_coding chr12:78520959 chr12:78520969 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_26382 0 0 0 0 2 NAV3 chr12:78520947 3'AG 78520947 Downstream 23bp
chr12 78520969 78520969 1 + C G LUAD 78520959 + 78520939 78520979 41 TTTAACAGCATGCAGCTTGACAGAAATACACTACCCAAAAA TTTAACAGCATGCAGCTTGACAGAAATACAGTACCCAAAAA < 41bp 1 0.392111900150689 1 0.236918300390244 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAV3 ENSG00000067798 CDS Human protein_coding chr12:78520959 chr12:78520969 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_26382 0 0 0 0 2 NAV3 chr12:78520988 5'GT 78520988 Upstream 20bp
chr10 1054920 1054920 1 + A T LUAD 1054906 + 1054886 1054926 41 GGATCTTCTCAGGAGAGGCCCCCTTTCATCCCTGAAGGAGT GGATCTTCTCAGGAGAGGCCCCCTTTCATCCCTGTAGGAGT < 41bp 1 0.0512206347887779 1 0.0281098783016205 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1054906 chr10:1054920 nonsynonymous SNV 0.727 2 35 hm5C_associated_SNPs_26383 0 0 1 0 1 GTPBP4 chr10:1054898 3'AG 1054898 Downstream 23bp
chr10 1054920 1054920 1 + A T LUAD 1054907 + 1054887 1054927 41 GATCTTCTCAGGAGAGGCCCCCTTTCATCCCTGAAGGAGTG GATCTTCTCAGGAGAGGCCCCCTTTCATCCCTGTAGGAGTG < 41bp 1 0.0257693646246066 1 0.18477138876915 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1054907 chr10:1054920 nonsynonymous SNV 0.727 2 34 hm5C_associated_SNPs_26384 0 0 1 0 1 GTPBP4 chr10:1054898 3'AG 1054898 Downstream 23bp
chr17 48153048 48153048 1 + C T LUAD 48153033 + 48153013 48153053 41 CGCTTTGCCGGCAGTGAGTCCGCTGTCTTCCACGGCTTCTT CGCTTTGCCGGCAGTGAGTCCGCTGTCTTCCACGGTTTCTT < 41bp 1 0.282985986050488 1 0.253248482942581 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48153033 chr17:48153048 synonymous SNV . 0 36 hm5C_associated_SNPs_26385 0 0 0 0 2 ITGA3 chr17:48152963 3'AG 48152963 Downstream 86bp
chr17 48153048 48153048 1 + C T LUAD 48153033 + 48153013 48153053 41 CGCTTTGCCGGCAGTGAGTCCGCTGTCTTCCACGGCTTCTT CGCTTTGCCGGCAGTGAGTCCGCTGTCTTCCACGGTTTCTT < 41bp 1 0.282985986050488 1 0.253248482942581 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48153033 chr17:48153048 synonymous SNV . 0 36 hm5C_associated_SNPs_26385 0 0 0 0 2 ITGA3 chr17:48153099 5'GT 48153099 Upstream 52bp
chr7 142458434 142458434 1 + G A LUAD 142458414 + 142458394 142458434 41 TCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAG TCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAA < 41bp 1 0.026247172394066 1 0.142227977514267 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458414 chr7:142458434 synonymous SNV . 0 41 hm5C_associated_SNPs_26386 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 29bp
chr7 142458434 142458434 1 + G A LUAD 142458415 + 142458395 142458435 41 CTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGA CTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAAA < 41bp 1 0.00339906157005303 1 0.0920908749103546 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458415 chr7:142458434 synonymous SNV . 0 40 hm5C_associated_SNPs_26387 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 29bp
chr7 142458434 142458434 1 + G A LUAD 142458416 + 142458396 142458436 41 TCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGAT TCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAAAT < 41bp 1 0.0410699040363612 1 0.104257315397263 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458416 chr7:142458434 synonymous SNV . 0 39 hm5C_associated_SNPs_26388 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 29bp
chr7 142458434 142458434 1 + G A LUAD 142458431 + 142458411 142458451 41 GCCCCCTTTGATGATGATGACAAGATCGTTGGGGGCTACAA GCCCCCTTTGATGATGATGACAAAATCGTTGGGGGCTACAA < 41bp 1 0.46500958649047 1 0.416912019252777 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458431 chr7:142458434 synonymous SNV . 0 24 hm5C_associated_SNPs_26389 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 29bp
chr7 142458434 142458434 1 + G A LUAD 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATGACAAAATCGTTGGGGGCTACAACTGTGA < 41bp 1 0.284325720337575 1 0.14754244685173 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458434 synonymous SNV . 0 18 hm5C_associated_SNPs_26390 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 29bp
chr7 142458434 142458434 1 + G A LUAD 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAAATCGTTGGGGGCTACAACTGTGAGGAGAATTC < 41bp 1 0.289325038868502 1 0.473096042871475 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458434 synonymous SNV . 0 9 hm5C_associated_SNPs_26391 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 29bp
chr7 142458434 142458434 1 + G A LUAD 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAAATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT < 41bp 1 0.169440146808227 1 0.198673665523529 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458434 synonymous SNV . 0 6 hm5C_associated_SNPs_26392 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 29bp
chr7 142458434 142458434 1 + G A LUAD 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAAATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC < 41bp 1 0.422527468925072 1 0.359947383403778 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458434 synonymous SNV . 0 3 hm5C_associated_SNPs_26393 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 29bp
chr1 22333450 22333450 1 + G A LUAD 22333431 + 22333411 22333451 41 CTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGG CTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTAG < 41bp 1 0.718641668507759 1 0.720436990261078 experiment 0.562716662984481 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333431 chr1:22333450 nonsynonymous SNV 0.440 4 40 hm5C_associated_SNPs_26397 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 80bp
chr1 22333450 22333450 1 + G A LUAD 22333431 + 22333411 22333451 41 CTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGG CTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTAG < 41bp 1 0.718641668507759 1 0.720436990261078 experiment 0.562716662984481 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333431 chr1:22333450 nonsynonymous SNV 0.440 4 40 hm5C_associated_SNPs_26397 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 58bp
chr1 22333450 22333450 1 + G A LUAD 22333433 + 22333413 22333453 41 GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTAGTG < 41bp 1 0.257279191590472 1 0.133709758520126 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333433 chr1:22333450 nonsynonymous SNV 0.440 4 38 hm5C_associated_SNPs_26398 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 80bp
chr1 22333450 22333450 1 + G A LUAD 22333433 + 22333413 22333453 41 GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTAGTG < 41bp 1 0.257279191590472 1 0.133709758520126 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333433 chr1:22333450 nonsynonymous SNV 0.440 4 38 hm5C_associated_SNPs_26398 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 58bp
chr1 22333450 22333450 1 + G A LUAD 22333434 + 22333414 22333454 41 GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTAGTGA < 41bp 1 0.193349096455848 1 0.249917358160019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333434 chr1:22333450 nonsynonymous SNV 0.440 4 37 hm5C_associated_SNPs_26399 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 80bp
chr1 22333450 22333450 1 + G A LUAD 22333434 + 22333414 22333454 41 GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTAGTGA < 41bp 1 0.193349096455848 1 0.249917358160019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333434 chr1:22333450 nonsynonymous SNV 0.440 4 37 hm5C_associated_SNPs_26399 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 58bp
chr1 22333450 22333450 1 + G A LUAD 22333436 + 22333416 22333456 41 AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTAGTGACA < 41bp 1 0.10821291652794 1 0.251509249210358 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333436 chr1:22333450 nonsynonymous SNV 0.440 4 35 hm5C_associated_SNPs_26400 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 80bp
chr1 22333450 22333450 1 + G A LUAD 22333436 + 22333416 22333456 41 AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTAGTGACA < 41bp 1 0.10821291652794 1 0.251509249210358 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333436 chr1:22333450 nonsynonymous SNV 0.440 4 35 hm5C_associated_SNPs_26400 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 58bp
chr1 22333450 22333450 1 + G A LUAD 22333438 + 22333418 22333458 41 ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTAGTGACATC < 41bp 1 0.330839554411043 1 0.111916720867157 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333438 chr1:22333450 nonsynonymous SNV 0.440 4 33 hm5C_associated_SNPs_26401 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 80bp
chr1 22333450 22333450 1 + G A LUAD 22333438 + 22333418 22333458 41 ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTAGTGACATC < 41bp 1 0.330839554411043 1 0.111916720867157 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333438 chr1:22333450 nonsynonymous SNV 0.440 4 33 hm5C_associated_SNPs_26401 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 58bp
chr1 22333450 22333450 1 + G A LUAD 22333440 + 22333420 22333460 41 GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT GCCGTCCAGCTCGCCTCACTCCCTCCCGCTAGTGACATCCT < 41bp 1 0.116109626202546 1 0.0998891592025757 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333440 chr1:22333450 nonsynonymous SNV 0.440 4 31 hm5C_associated_SNPs_26402 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 80bp
chr1 22333450 22333450 1 + G A LUAD 22333440 + 22333420 22333460 41 GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT GCCGTCCAGCTCGCCTCACTCCCTCCCGCTAGTGACATCCT < 41bp 1 0.116109626202546 1 0.0998891592025757 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333440 chr1:22333450 nonsynonymous SNV 0.440 4 31 hm5C_associated_SNPs_26402 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 58bp
chr1 22333450 22333450 1 + G A LUAD 22333441 + 22333421 22333461 41 CCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTT CCGTCCAGCTCGCCTCACTCCCTCCCGCTAGTGACATCCTT < 41bp 1 0.0567875495838244 1 0.0474387407302856 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333441 chr1:22333450 nonsynonymous SNV 0.440 4 30 hm5C_associated_SNPs_26403 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 80bp
chr1 22333450 22333450 1 + G A LUAD 22333441 + 22333421 22333461 41 CCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTT CCGTCCAGCTCGCCTCACTCCCTCCCGCTAGTGACATCCTT < 41bp 1 0.0567875495838244 1 0.0474387407302856 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333441 chr1:22333450 nonsynonymous SNV 0.440 4 30 hm5C_associated_SNPs_26403 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 58bp
chr1 22333450 22333450 1 + G A LUAD 22333442 + 22333422 22333462 41 CGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTC CGTCCAGCTCGCCTCACTCCCTCCCGCTAGTGACATCCTTC < 41bp 1 0.407580825610564 1 0.217504113912582 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333442 chr1:22333450 nonsynonymous SNV 0.440 4 29 hm5C_associated_SNPs_26404 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 80bp
chr1 22333450 22333450 1 + G A LUAD 22333442 + 22333422 22333462 41 CGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTC CGTCCAGCTCGCCTCACTCCCTCCCGCTAGTGACATCCTTC < 41bp 1 0.407580825610564 1 0.217504113912582 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333442 chr1:22333450 nonsynonymous SNV 0.440 4 29 hm5C_associated_SNPs_26404 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 58bp
chr1 22333450 22333450 1 + G A LUAD 22333444 + 22333424 22333464 41 TCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCC TCCAGCTCGCCTCACTCCCTCCCGCTAGTGACATCCTTCCC < 41bp 1 0.33811829986443 1 0.502896666526794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333444 chr1:22333450 nonsynonymous SNV 0.440 4 27 hm5C_associated_SNPs_26405 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 80bp
chr1 22333450 22333450 1 + G A LUAD 22333444 + 22333424 22333464 41 TCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCC TCCAGCTCGCCTCACTCCCTCCCGCTAGTGACATCCTTCCC < 41bp 1 0.33811829986443 1 0.502896666526794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333444 chr1:22333450 nonsynonymous SNV 0.440 4 27 hm5C_associated_SNPs_26405 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 58bp
chr1 22333450 22333450 1 + G A LUAD 22333445 + 22333425 22333465 41 CCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCA CCAGCTCGCCTCACTCCCTCCCGCTAGTGACATCCTTCCCA < 41bp 1 0.250771339637982 1 0.276189982891083 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333445 chr1:22333450 nonsynonymous SNV 0.440 4 26 hm5C_associated_SNPs_26406 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 80bp
chr1 22333450 22333450 1 + G A LUAD 22333445 + 22333425 22333465 41 CCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCA CCAGCTCGCCTCACTCCCTCCCGCTAGTGACATCCTTCCCA < 41bp 1 0.250771339637982 1 0.276189982891083 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333445 chr1:22333450 nonsynonymous SNV 0.440 4 26 hm5C_associated_SNPs_26406 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 58bp
chr1 22333450 22333450 1 + G A LUAD 22333446 + 22333426 22333466 41 CAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCAA CAGCTCGCCTCACTCCCTCCCGCTAGTGACATCCTTCCCAA < 41bp 1 0.761625669517458 1 0.902934074401855 experiment 0.476748660965084 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333446 chr1:22333450 nonsynonymous SNV 0.440 4 25 hm5C_associated_SNPs_26407 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 80bp
chr1 22333450 22333450 1 + G A LUAD 22333446 + 22333426 22333466 41 CAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCAA CAGCTCGCCTCACTCCCTCCCGCTAGTGACATCCTTCCCAA < 41bp 1 0.761625669517458 1 0.902934074401855 experiment 0.476748660965084 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333446 chr1:22333450 nonsynonymous SNV 0.440 4 25 hm5C_associated_SNPs_26407 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 58bp
chr19 40704286 40704286 1 + G T LUAD 40704290 + 40704270 40704310 41 CCCACCCCACAGTCCTGATCCTGGAGGCCATCGAGAACCAC CCCACCCCACAGTCCTTATCCTGGAGGCCATCGAGAACCAC < 41bp 1 0.788252343564797 1 0.715935230255127 experiment 0.423495312870406 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40704290 chr19:40704286 synonymous SNV . 0 17 hm5C_associated_SNPs_26408 0 0 1 0 1 MAP3K10 chr19:40704282 3'AG 40704282 Downstream 5bp
chr19 40704286 40704286 1 + G T LUAD 40704298 + 40704278 40704318 41 ACAGTCCTGATCCTGGAGGCCATCGAGAACCACAACCTCGC ACAGTCCTTATCCTGGAGGCCATCGAGAACCACAACCTCGC < 41bp 1 0.120401979497838 1 0.0595390498638153 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40704298 chr19:40704286 synonymous SNV . 0 9 hm5C_associated_SNPs_26409 0 0 1 0 1 MAP3K10 chr19:40704282 3'AG 40704282 Downstream 5bp
chr1 206653244 206653244 1 + A G LUAD 206653240 + 206653220 206653260 41 GGACGTCCCCAAGTTCGTCCCCAAAGTGGACCTGCAGGCGG GGACGTCCCCAAGTTCGTCCCCAAGGTGGACCTGCAGGCGG < 41bp 1 0.305363579885795 1 0.317176580429077 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IKBKE ENSG00000143466 CDS Human other chr1:206653240 chr1:206653244 synonymous SNV . 0 25 hm5C_associated_SNPs_26410 0 0 1 0 2 IKBKE chr1:206653213 3'AG 206653213 Downstream 32bp
chr1 206653244 206653244 1 + A G LUAD 206653240 + 206653220 206653260 41 GGACGTCCCCAAGTTCGTCCCCAAAGTGGACCTGCAGGCGG GGACGTCCCCAAGTTCGTCCCCAAGGTGGACCTGCAGGCGG < 41bp 1 0.305363579885795 1 0.317176580429077 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IKBKE ENSG00000143466 CDS Human other chr1:206653240 chr1:206653244 synonymous SNV . 0 25 hm5C_associated_SNPs_26410 0 0 1 0 2 IKBKE chr1:206653277 5'GT 206653277 Upstream 34bp
chr9 106901507 106901507 1 + G T LUAD 106901519 + 106901499 106901539 41 CTACAGTAGCCAGATTTACTCAATGTCAAAATGGAAAGATT CTACAGTATCCAGATTTACTCAATGTCAAAATGGAAAGATT < 41bp 1 0.26288270738427 1 0.601303398609161 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMC2 ENSG00000136824 CDS Human protein_coding chr9:106901519 chr9:106901507 nonsynonymous SNV 0.999 0 9 hm5C_associated_SNPs_26416 0 0 1 0 1 SMC2 chr9:106901420 3'AG 106901420 Downstream 88bp
chr2 54872432 54872432 1 + C T LUAD 54872413 + 54872393 54872433 41 AAGAAGGAGATCGAAGAGCTCCAAAGCCAAGCCCAGGCCCT AAGAAGGAGATCGAAGAGCTCCAAAGCCAAGCCCAGGCCTT < 41bp 1 0.309648101495749 1 0.110696315765381 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872413 chr2:54872432 synonymous SNV . 0 40 hm5C_associated_SNPs_26417 0 0 1 0 1 SPTBN1 chr2:54872366 3'AG 54872366 Downstream 67bp
chr2 54872432 54872432 1 + C T LUAD 54872420 + 54872400 54872440 41 AGATCGAAGAGCTCCAAAGCCAAGCCCAGGCCCTGAGTCAG AGATCGAAGAGCTCCAAAGCCAAGCCCAGGCCTTGAGTCAG < 41bp 1 0.302649513058218 1 0.357260823249817 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872420 chr2:54872432 synonymous SNV . 0 33 hm5C_associated_SNPs_26418 0 0 1 0 1 SPTBN1 chr2:54872366 3'AG 54872366 Downstream 67bp
chr2 54872432 54872432 1 + C T LUAD 54872425 + 54872405 54872445 41 GAAGAGCTCCAAAGCCAAGCCCAGGCCCTGAGTCAGGAAGG GAAGAGCTCCAAAGCCAAGCCCAGGCCTTGAGTCAGGAAGG < 41bp 1 0.187848006031811 1 0.439471960067749 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872425 chr2:54872432 synonymous SNV . 0 28 hm5C_associated_SNPs_26419 0 0 1 0 1 SPTBN1 chr2:54872366 3'AG 54872366 Downstream 67bp
chr2 54872432 54872432 1 + C T LUAD 54872430 + 54872410 54872450 41 GCTCCAAAGCCAAGCCCAGGCCCTGAGTCAGGAAGGGAAGA GCTCCAAAGCCAAGCCCAGGCCTTGAGTCAGGAAGGGAAGA < 41bp 1 0.0306971342782898 1 0.0547321140766144 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872430 chr2:54872432 synonymous SNV . 0 23 hm5C_associated_SNPs_26420 0 0 1 0 1 SPTBN1 chr2:54872366 3'AG 54872366 Downstream 67bp
chr4 79399131 79399131 1 + G C LUAD 79399112 + 79399092 79399132 41 GAATTCACCCAGGCGAAGGTCATTATCAACGATACCGAGGA GAATTCACCCAGGCGAAGGTCATTATCAACGATACCGAGCA < 41bp 1 0.0792669213277492 1 0.0852461755275726 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79399112 chr4:79399131 nonsynonymous SNV 0.490 3 40 hm5C_associated_SNPs_26421 0 0 1 0 1 FRAS1 chr4:79399215 5'GT 79399215 Upstream 85bp
chr7 44801096 44801096 1 + G T LUAD 44801091 + 44801071 44801111 41 CGGCTGACCTTCCCTGTGCGCGATGGGGTGGTCCTGGAGCC CGGCTGACCTTCCCTGTGCGCGATGTGGTGGTCCTGGAGCC < 41bp 1 0.334786014092226 1 0.489540100097656 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44801091 chr7:44801096 nonsynonymous SNV 0.994 4 26 hm5C_associated_SNPs_26433 0 0 1 0 2 ZMIZ2 chr7:44801048 3'AG 44801048 Downstream 49bp
chr7 44801096 44801096 1 + G T LUAD 44801091 + 44801071 44801111 41 CGGCTGACCTTCCCTGTGCGCGATGGGGTGGTCCTGGAGCC CGGCTGACCTTCCCTGTGCGCGATGTGGTGGTCCTGGAGCC < 41bp 1 0.334786014092226 1 0.489540100097656 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44801091 chr7:44801096 nonsynonymous SNV 0.994 4 26 hm5C_associated_SNPs_26433 0 0 1 0 2 ZMIZ2 chr7:44801192 5'GT 44801192 Upstream 97bp
chr8 27288520 27288520 1 + G A LUAD 27288507 + 27288487 27288527 41 CCGGCTTCGCCAACATCGACCAGGAGACCTACCGCTGTGAA CCGGCTTCGCCAACATCGACCAGGAGACCTACCACTGTGAA < 41bp 1 0.695988580485059 1 0.964615345001221 experiment 0.608022839029881 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTK2B ENSG00000120899 CDS Human protein_coding chr8:27288507 chr8:27288520 nonsynonymous SNV 0.994 3 34 hm5C_associated_SNPs_26434 0 0 1 0 1 PTK2B chr8:27288533 5'GT 27288533 Upstream 14bp
chr16 1818265 1818265 1 + G A LUAD 1818253 + 1818233 1818273 41 CCCGTCCCGGGGGCATCATCCACGTGTATGGCGATGACAGC CCCGTCCCGGGGGCATCATCCACGTGTATGGCAATGACAGC < 41bp 1 0.51222784198018 1 0.746766686439514 experiment 0.97554431603964 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1818253 chr16:1818265 nonsynonymous SNV 0.070 4 33 hm5C_associated_SNPs_26436 0 0 1 0 1 MAPK8IP3 chr16:1818200 3'AG 1818200 Downstream 66bp
chr4 20568974 20568974 1 + G T LUAD 20568982 + 20568962 20569002 41 AGTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGG AGTGATCCAGTTTACTTTTACCGATGCACCTGTCCATATGG < 41bp 1 0.0942549125546582 1 0.288368284702301 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568982 chr4:20568974 nonsynonymous SNV 0.983 3 13 hm5C_associated_SNPs_26437 0 0 1 0 2 SLIT2 chr4:20568885 3'AG 20568885 Downstream 90bp
chr4 20568974 20568974 1 + G T LUAD 20568982 + 20568962 20569002 41 AGTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGG AGTGATCCAGTTTACTTTTACCGATGCACCTGTCCATATGG < 41bp 1 0.0942549125546582 1 0.288368284702301 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568982 chr4:20568974 nonsynonymous SNV 0.983 3 13 hm5C_associated_SNPs_26437 0 0 1 0 2 SLIT2 chr4:20569009 5'GT 20569009 Upstream 36bp
chr4 20568974 20568974 1 + G T LUAD 20568983 + 20568963 20569003 41 GTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGGT GTGATCCAGTTTACTTTTACCGATGCACCTGTCCATATGGT < 41bp 1 0.110538360407393 1 0.432897984981537 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568983 chr4:20568974 nonsynonymous SNV 0.983 3 12 hm5C_associated_SNPs_26438 0 0 1 0 2 SLIT2 chr4:20568885 3'AG 20568885 Downstream 90bp
chr4 20568974 20568974 1 + G T LUAD 20568983 + 20568963 20569003 41 GTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGGT GTGATCCAGTTTACTTTTACCGATGCACCTGTCCATATGGT < 41bp 1 0.110538360407393 1 0.432897984981537 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568983 chr4:20568974 nonsynonymous SNV 0.983 3 12 hm5C_associated_SNPs_26438 0 0 1 0 2 SLIT2 chr4:20569009 5'GT 20569009 Upstream 36bp
chr5 176083833 176083833 1 + C T LUAD 176083814 + 176083794 176083834 41 TTCATGGGCATCGCCCTCCTCCAGGTACCCTTGTGGCCCCA TTCATGGGCATCGCCCTCCTCCAGGTACCCTTGTGGCCCTA < 41bp 1 0.737756893165769 1 0.913835167884827 experiment 0.524486213668462 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176083814 chr5:176083833 nonsynonymous SNV 0.000 0 40 hm5C_associated_SNPs_26439 0 0 1 0 1 TSPAN17 chr5:176083925 5'GT 176083925 Upstream 93bp
chr1 23236973 23236973 1 + C A LUAD 23236971 + 23236951 23236991 41 TGGACTGTTGGCAGAAGGACCGCAACCACCGGCCCAAGTTC TGGACTGTTGGCAGAAGGACCGAAACCACCGGCCCAAGTTC < 41bp 1 0.417740853191229 1 0.435520708560944 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23236971 chr1:23236973 synonymous SNV . 0 23 hm5C_associated_SNPs_26442 0 0 0 0 2 EPHB2 chr1:23236875 3'AG 23236875 Downstream 99bp
chr1 23236973 23236973 1 + C A LUAD 23236971 + 23236951 23236991 41 TGGACTGTTGGCAGAAGGACCGCAACCACCGGCCCAAGTTC TGGACTGTTGGCAGAAGGACCGAAACCACCGGCCCAAGTTC < 41bp 1 0.417740853191229 1 0.435520708560944 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23236971 chr1:23236973 synonymous SNV . 0 23 hm5C_associated_SNPs_26442 0 0 0 0 2 EPHB2 chr1:23237068 5'GT 23237068 Upstream 96bp
chr7 142459819 142459819 1 + C A LUAD 142459799 + 142459779 142459819 41 ATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCC ATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCA < 41bp 1 0.433954602338823 1 0.147596567869186 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459799 chr7:142459819 nonsynonymous SNV 0.000 3 41 hm5C_associated_SNPs_26443 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 60bp
chr7 142459819 142459819 1 + C A LUAD 142459802 + 142459782 142459822 41 AACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCC AACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCATCC < 41bp 1 0.428228946303071 1 0.210590451955795 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459802 chr7:142459819 nonsynonymous SNV 0.000 3 38 hm5C_associated_SNPs_26444 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 60bp
chr7 142459819 142459819 1 + C A LUAD 142459804 + 142459784 142459824 41 CGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAG CGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCATCCAG < 41bp 1 0.6330678939634 1 0.300191462039948 experiment 0.733864212073201 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459804 chr7:142459819 nonsynonymous SNV 0.000 3 36 hm5C_associated_SNPs_26445 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 60bp
chr7 142459819 142459819 1 + C A LUAD 142459806 + 142459786 142459826 41 CCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCC CCCGCGTGTCCACCATCTCTCTGCCCACCGCCCATCCAGCC < 41bp 1 0.56803183254723 1 0.601418972015381 experiment 0.863936334905539 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459806 chr7:142459819 nonsynonymous SNV 0.000 3 34 hm5C_associated_SNPs_26446 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 60bp
chr7 142459819 142459819 1 + C A LUAD 142459809 + 142459789 142459829 41 GCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACT GCGTGTCCACCATCTCTCTGCCCACCGCCCATCCAGCCACT < 41bp 1 0.172783522916712 1 0.0335991084575653 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459809 chr7:142459819 nonsynonymous SNV 0.000 3 31 hm5C_associated_SNPs_26447 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 60bp
chr7 142459819 142459819 1 + C A LUAD 142459810 + 142459790 142459830 41 CGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTG CGTGTCCACCATCTCTCTGCCCACCGCCCATCCAGCCACTG < 41bp 1 0.201773282961623 1 0.0401272475719452 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459810 chr7:142459819 nonsynonymous SNV 0.000 3 30 hm5C_associated_SNPs_26448 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 60bp
chr7 142459819 142459819 1 + C A LUAD 142459811 + 142459791 142459831 41 GTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGG GTGTCCACCATCTCTCTGCCCACCGCCCATCCAGCCACTGG < 41bp 1 0.658714012721151 1 0.0246598422527313 experiment 0.682571974557698 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459811 chr7:142459819 nonsynonymous SNV 0.000 3 29 hm5C_associated_SNPs_26449 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 60bp
chr7 142459819 142459819 1 + C A LUAD 142459813 + 142459793 142459833 41 GTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCA GTCCACCATCTCTCTGCCCACCGCCCATCCAGCCACTGGCA < 41bp 1 0.317617556267906 1 0.0656626224517822 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459813 chr7:142459819 nonsynonymous SNV 0.000 3 27 hm5C_associated_SNPs_26450 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 60bp
chr7 142459819 142459819 1 + C A LUAD 142459814 + 142459794 142459834 41 TCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCAC TCCACCATCTCTCTGCCCACCGCCCATCCAGCCACTGGCAC < 41bp 1 0.552204976303111 1 0.066987007856369 experiment 0.895590047393779 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459814 chr7:142459819 nonsynonymous SNV 0.000 3 26 hm5C_associated_SNPs_26451 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 60bp
chr7 142459819 142459819 1 + C A LUAD 142459816 + 142459796 142459836 41 CACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGA CACCATCTCTCTGCCCACCGCCCATCCAGCCACTGGCACGA < 41bp 1 0.209746275407638 1 0.121298164129257 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459816 chr7:142459819 nonsynonymous SNV 0.000 3 24 hm5C_associated_SNPs_26452 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 60bp
chr7 142459819 142459819 1 + C A LUAD 142459817 + 142459797 142459837 41 ACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAA ACCATCTCTCTGCCCACCGCCCATCCAGCCACTGGCACGAA < 41bp 1 0.100707900853731 1 0.146905690431595 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459817 chr7:142459819 nonsynonymous SNV 0.000 3 23 hm5C_associated_SNPs_26453 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 60bp
chr7 142459819 142459819 1 + C A LUAD 142459818 + 142459798 142459838 41 CCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAG CCATCTCTCTGCCCACCGCCCATCCAGCCACTGGCACGAAG < 41bp 1 0.266574300522098 1 0.142884105443954 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459818 chr7:142459819 nonsynonymous SNV 0.000 3 22 hm5C_associated_SNPs_26454 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 60bp
chr7 142459819 142459819 1 + C A LUAD 142459821 + 142459801 142459841 41 TCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGC TCTCTCTGCCCACCGCCCATCCAGCCACTGGCACGAAGTGC < 41bp 1 0.318100500928029 1 0.304918706417084 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459821 chr7:142459819 nonsynonymous SNV 0.000 3 19 hm5C_associated_SNPs_26455 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 60bp
chr7 142459819 142459819 1 + C A LUAD 142459822 + 142459802 142459842 41 CTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCC CTCTCTGCCCACCGCCCATCCAGCCACTGGCACGAAGTGCC < 41bp 1 0.470397050781112 1 0.462392747402191 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459822 chr7:142459819 nonsynonymous SNV 0.000 3 18 hm5C_associated_SNPs_26456 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 60bp
chr7 142459819 142459819 1 + C A LUAD 142459825 + 142459805 142459845 41 TCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCA TCTGCCCACCGCCCATCCAGCCACTGGCACGAAGTGCCTCA < 41bp 1 0.422623570446058 1 0.0610598027706146 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459825 chr7:142459819 nonsynonymous SNV 0.000 3 15 hm5C_associated_SNPs_26457 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 60bp
chr7 142459819 142459819 1 + C A LUAD 142459826 + 142459806 142459846 41 CTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCAT CTGCCCACCGCCCATCCAGCCACTGGCACGAAGTGCCTCAT < 41bp 1 0.660240693383592 1 0.174250900745392 experiment 0.679518613232816 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459826 chr7:142459819 nonsynonymous SNV 0.000 3 14 hm5C_associated_SNPs_26458 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 60bp
chr7 142459819 142459819 1 + C A LUAD 142459828 + 142459808 142459848 41 GCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCT GCCCACCGCCCATCCAGCCACTGGCACGAAGTGCCTCATCT < 41bp 1 0.670974730584427 1 0.240819066762924 experiment 0.658050538831145 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459828 chr7:142459819 nonsynonymous SNV 0.000 3 12 hm5C_associated_SNPs_26459 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 60bp
chr7 142459819 142459819 1 + C A LUAD 142459834 + 142459814 142459854 41 CGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCTCTGGCT CGCCCATCCAGCCACTGGCACGAAGTGCCTCATCTCTGGCT < 41bp 1 0.665463751450549 1 0.226446241140366 experiment 0.669072497098902 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459834 chr7:142459819 nonsynonymous SNV 0.000 3 6 hm5C_associated_SNPs_26460 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 60bp
chr6 4935982 4935982 1 + G T LUAD 4935980 + 4935960 4936000 41 CTTGTTATCCACAAAGTCCTCAGAGAATAACTCACTAAATC CTTGTTATCCACAAAGTCCTCATAGAATAACTCACTAAATC < 41bp 1 0.32188207446431 1 0.716600179672241 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDYL ENSG00000153046 CDS Human protein_coding chr6:4935980 chr6:4935982 stopgain 0.991 1 23 hm5C_associated_SNPs_26461 0 0 1 0 1 CDYL chr6:4936005 5'GT 4936005 Upstream 24bp
chr12 104378659 104378659 1 + C A LUAD 104378675 + 104378655 104378695 41 CGTTCAAGAGGTGCAATATACATTTGACCTACAGCTTGCCC CGTTAAAGAGGTGCAATATACATTTGACCTACAGCTTGCCC < 41bp 1 0.249351820316319 1 0.0368557870388031 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TDG ENSG00000139372 CDS Human protein_coding chr12:104378675 chr12:104378659 nonsynonymous SNV 0.652 1 5 hm5C_associated_SNPs_26462 0 0 1 0 1 TDG chr12:104378698 5'GT 104378698 Upstream 40bp
chr2 71795372 71795372 1 + C T LUAD 71795352 + 71795332 71795372 41 GGGAACTGGGGCACAACGGGCCTCACCTACCCCAAGTTTTC GGGAACTGGGGCACAACGGGCCTCACCTACCCCAAGTTTTT < 41bp 1 0.100155845244429 1 0.0680699646472931 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71795352 chr2:71795372 nonsynonymous SNV 0.967 5 41 hm5C_associated_SNPs_26464 0 0 0 0 2 DYSF chr2:71795302 3'AG 71795302 Downstream 71bp
chr2 71795372 71795372 1 + C T LUAD 71795352 + 71795332 71795372 41 GGGAACTGGGGCACAACGGGCCTCACCTACCCCAAGTTTTC GGGAACTGGGGCACAACGGGCCTCACCTACCCCAAGTTTTT < 41bp 1 0.100155845244429 1 0.0680699646472931 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71795352 chr2:71795372 nonsynonymous SNV 0.967 5 41 hm5C_associated_SNPs_26464 0 0 0 0 2 DYSF chr2:71795468 5'GT 71795468 Upstream 97bp
chr10 93695417 93695417 1 + A G LUAD 93695421 + 93695401 93695441 41 TTTGTTATTTCAGGCTAGATCGCCTTTTTATTTTACTGGAT TTTGTTATTTCAGGCTGGATCGCCTTTTTATTTTACTGGAT < 41bp 1 0.411376534137435 1 0.281265377998352 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93695421 chr10:93695417 synonymous SNV . 0 17 hm5C_associated_SNPs_26465 0 0 1 0 1 BTAF1 chr10:93695414 3'AG 93695414 Downstream 4bp
chr19 3525945 3525945 1 + C A LUAD 3525949 + 3525929 3525969 41 GGAGACCGCTTCATCCCCTCCAGAGCCGGAGCCAACTGGAG GGAGACCGCTTCATCCACTCCAGAGCCGGAGCCAACTGGAG < 41bp 1 0.420587285634105 1 0.72218245267868 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3525949 chr19:3525945 nonsynonymous SNV 0.689 4 17 hm5C_associated_SNPs_26466 0 0 1 0 2 FZR1 chr19:3525866 3'AG 3525866 Downstream 80bp
chr19 3525945 3525945 1 + C A LUAD 3525949 + 3525929 3525969 41 GGAGACCGCTTCATCCCCTCCAGAGCCGGAGCCAACTGGAG GGAGACCGCTTCATCCACTCCAGAGCCGGAGCCAACTGGAG < 41bp 1 0.420587285634105 1 0.72218245267868 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3525949 chr19:3525945 nonsynonymous SNV 0.689 4 17 hm5C_associated_SNPs_26466 0 0 1 0 2 FZR1 chr19:3525991 5'GT 3525991 Upstream 47bp
chr18 2656197 2656197 1 + G T LUAD 2656205 + 2656185 2656225 41 GTCCGAGCTCGGGGACCGGCCTCTGCAGGTCGGGGAGCGCT GTCCGAGCTCGGTGACCGGCCTCTGCAGGTCGGGGAGCGCT < 41bp 1 0.427769926473259 1 0.49423936009407 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMCHD1 ENSG00000101596 CDS Human protein_coding chr18:2656205 chr18:2656197 synonymous SNV . 0 13 hm5C_associated_SNPs_26467 0 0 1 0 1 SMCHD1 chr18:2656260 5'GT 2656260 Upstream 64bp
chr2 233697651 233697651 1 + G T LUAD 233697652 + 233697632 233697672 41 GCTGCGGATGGAAGAGGAGGCAGCCAGACTCCGGCATGAGG GCTGCGGATGGAAGAGGAGTCAGCCAGACTCCGGCATGAGG < 41bp 1 0.400512182629614 1 0.330240845680237 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233697652 chr2:233697651 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_26468 0 0 1 0 1 GIGYF2 chr2:233697567 3'AG 233697567 Downstream 85bp
chr2 233697651 233697651 1 + G T LUAD 233697656 + 233697636 233697676 41 CGGATGGAAGAGGAGGCAGCCAGACTCCGGCATGAGGAAGA CGGATGGAAGAGGAGTCAGCCAGACTCCGGCATGAGGAAGA < 41bp 1 0.310612765552803 1 0.2479068338871 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233697656 chr2:233697651 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_26469 0 0 1 0 1 GIGYF2 chr2:233697567 3'AG 233697567 Downstream 85bp
chr11 123474233 123474233 1 + G T LUAD 123474241 + 123474221 123474261 41 CCCCCTGACGACGACTTCAACACAATGGGGTGAGTGAGGCC CCCCCTGACGACTACTTCAACACAATGGGGTGAGTGAGGCC < 41bp 1 0.758347673131366 1 0.317016959190369 experiment 0.483304653737268 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123474241 chr11:123474233 nonsynonymous SNV 0.984 4 13 hm5C_associated_SNPs_26470 0 0 0 0 2 GRAMD1B chr11:123474134 3'AG 123474134 Downstream 100bp
chr11 123474233 123474233 1 + G T LUAD 123474241 + 123474221 123474261 41 CCCCCTGACGACGACTTCAACACAATGGGGTGAGTGAGGCC CCCCCTGACGACTACTTCAACACAATGGGGTGAGTGAGGCC < 41bp 1 0.758347673131366 1 0.317016959190369 experiment 0.483304653737268 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123474241 chr11:123474233 nonsynonymous SNV 0.984 4 13 hm5C_associated_SNPs_26470 0 0 0 0 2 GRAMD1B chr11:123474249 5'GT 123474249 Upstream 17bp
chr6 150290487 150290487 1 + G T LUAD 150290478 + 150290458 150290498 41 AATTTTTGATGTACTGGGAACAAATGCTGGATCCAACAAGT AATTTTTGATGTACTGGGAACAAATGCTGTATCCAACAAGT < 41bp 1 0.231255114860997 1 0.354892015457153 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ULBP1 ENSG00000111981 CDS Human protein_coding chr6:150290478 chr6:150290487 nonsynonymous SNV 0.009 2 30 hm5C_associated_SNPs_26472 0 0 0 0 1 ULBP1 chr6:150290496 5'GT 150290496 Upstream 10bp
chr4 76711338 76711338 1 + C G LUAD 76711339 + 76711319 76711359 41 CAGAAGTTATTCGAGGCTGCCAAGTAAACCAAGACTACTTT CAGAAGTTATTCGAGGCTGGCAAGTAAACCAAGACTACTTT < 41bp 1 0.398365334203002 1 0.371402442455292 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control USO1 ENSG00000138768 CDS Human protein_coding chr4:76711339 chr4:76711338 nonsynonymous SNV 0.997 3 20 hm5C_associated_SNPs_26473 0 0 1 0 2 USO1 chr4:76711303 3'AG 76711303 Downstream 36bp
chr4 76711338 76711338 1 + C G LUAD 76711339 + 76711319 76711359 41 CAGAAGTTATTCGAGGCTGCCAAGTAAACCAAGACTACTTT CAGAAGTTATTCGAGGCTGGCAAGTAAACCAAGACTACTTT < 41bp 1 0.398365334203002 1 0.371402442455292 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control USO1 ENSG00000138768 CDS Human protein_coding chr4:76711339 chr4:76711338 nonsynonymous SNV 0.997 3 20 hm5C_associated_SNPs_26473 0 0 1 0 2 USO1 chr4:76711391 5'GT 76711391 Upstream 54bp
chr1 228525997 228525997 1 + C G LUAD 228526010 + 228525990 228526030 41 GCTGTCACCTGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCC GCTGTCAGCTGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCC < 41bp 1 0.0586015051273433 1 0.525192677974701 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526010 chr1:228525997 nonsynonymous SNV 0.379 1 8 hm5C_associated_SNPs_26474 0 0 0 0 2 OBSCN chr1:228525991 3'AG 228525991 Downstream 7bp
chr1 228525997 228525997 1 + C G LUAD 228526010 + 228525990 228526030 41 GCTGTCACCTGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCC GCTGTCAGCTGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCC < 41bp 1 0.0586015051273433 1 0.525192677974701 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526010 chr1:228525997 nonsynonymous SNV 0.379 1 8 hm5C_associated_SNPs_26474 0 0 0 0 2 OBSCN chr1:228526073 5'GT 228526073 Upstream 77bp
chr1 228525997 228525997 1 + C G LUAD 228526011 + 228525991 228526031 41 CTGTCACCTGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCC CTGTCAGCTGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCC < 41bp 1 0.0677706948731479 1 0.65358304977417 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526011 chr1:228525997 nonsynonymous SNV 0.379 1 7 hm5C_associated_SNPs_26475 0 0 0 0 2 OBSCN chr1:228525991 3'AG 228525991 Downstream 7bp
chr1 228525997 228525997 1 + C G LUAD 228526011 + 228525991 228526031 41 CTGTCACCTGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCC CTGTCAGCTGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCC < 41bp 1 0.0677706948731479 1 0.65358304977417 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526011 chr1:228525997 nonsynonymous SNV 0.379 1 7 hm5C_associated_SNPs_26475 0 0 0 0 2 OBSCN chr1:228526073 5'GT 228526073 Upstream 77bp
chr11 71209481 71209481 1 + C T LUAD 71209490 + 71209470 71209510 41 GCGTACCACGCCGAGAACTACAGCCCTGAGGACAACAGGTT GCGTACCACGCTGAGAACTACAGCCCTGAGGACAACAGGTT < 41bp 1 0.162273782788571 1 0.163086414337158 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71209490 chr11:71209481 synonymous SNV . 0 12 hm5C_associated_SNPs_26476 0 0 1 0 2 NADSYN1 chr11:71209398 3'AG 71209398 Downstream 84bp
chr11 71209481 71209481 1 + C T LUAD 71209490 + 71209470 71209510 41 GCGTACCACGCCGAGAACTACAGCCCTGAGGACAACAGGTT GCGTACCACGCTGAGAACTACAGCCCTGAGGACAACAGGTT < 41bp 1 0.162273782788571 1 0.163086414337158 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71209490 chr11:71209481 synonymous SNV . 0 12 hm5C_associated_SNPs_26476 0 0 1 0 2 NADSYN1 chr11:71209574 5'GT 71209574 Upstream 94bp
chr3 33879712 33879712 1 + G C LUAD 33879698 + 33879678 33879718 41 TTCTCTTCCTAATTTTAGATCTGTTTGAGAAGATGGTTCCC TTCTCTTCCTAATTTTAGATCTGTTTGAGAAGATCGTTCCC < 41bp 1 0.129843089605041 1 0.0693377256393433 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33879698 chr3:33879712 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_26483 0 0 1 0 1 PDCD6IP chr3:33879696 3'AG 33879696 Downstream 17bp
chr1 1559062 1559062 1 + A T LUAD 1559066 + 1559046 1559086 41 CACGACCTGCTGCTGTACGACAACGCCCAGATCGGTGCGCG CACGACCTGCTGCTGTTCGACAACGCCCAGATCGGTGCGCG < 41bp 1 0.427914698241005 1 0.772683262825012 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MIB2 ENSG00000197530 CDS Human protein_coding chr1:1559066 chr1:1559062 nonsynonymous SNV 0.964 4 17 hm5C_associated_SNPs_26484 0 0 0 0 1 MIB2 chr1:1559079 5'GT 1559079 Upstream 18bp
chr2 109347872 109347872 1 + A G LUAD 109347873 + 109347853 109347893 41 ACTGATGGAAGAGCAAAATACTGGCTTGAAAGAGCAGCCAA ACTGATGGAAGAGCAAAATGCTGGCTTGAAAGAGCAGCCAA < 41bp 1 0.636910494561734 1 0.345612943172455 experiment 0.726179010876532 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347873 chr2:109347872 nonsynonymous SNV 0.997 3 20 hm5C_associated_SNPs_26485 0 0 1 0 1 RANBP2 chr2:109347930 5'GT 109347930 Upstream 59bp
chr2 109347872 109347872 1 + A G LUAD 109347887 + 109347867 109347907 41 AAAATACTGGCTTGAAAGAGCAGCCAAACTTTTCCCAGGAA AAAATGCTGGCTTGAAAGAGCAGCCAAACTTTTCCCAGGAA < 41bp 1 0.210582105898099 1 0.549694418907166 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347887 chr2:109347872 nonsynonymous SNV 0.997 3 6 hm5C_associated_SNPs_26486 0 0 1 0 1 RANBP2 chr2:109347930 5'GT 109347930 Upstream 59bp
chr2 109347872 109347872 1 + A G LUAD 109347890 + 109347870 109347910 41 ATACTGGCTTGAAAGAGCAGCCAAACTTTTCCCAGGAAGTC ATGCTGGCTTGAAAGAGCAGCCAAACTTTTCCCAGGAAGTC < 41bp 1 0.0842184629058168 1 0.234037607908249 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347890 chr2:109347872 nonsynonymous SNV 0.997 3 3 hm5C_associated_SNPs_26487 0 0 1 0 1 RANBP2 chr2:109347930 5'GT 109347930 Upstream 59bp
chr7 142459838 142459838 1 + G A LUAD 142459818 + 142459798 142459838 41 CCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAG CCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAA < 41bp 1 0.128629153618836 1 0.225198984146118 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459818 chr7:142459838 synonymous SNV . 0 41 hm5C_associated_SNPs_26489 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 41bp
chr7 142459838 142459838 1 + G A LUAD 142459819 + 142459799 142459839 41 CATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGT CATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAAT < 41bp 1 0.69312298190093 1 0.937215507030487 experiment 0.61375403619814 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459819 chr7:142459838 synonymous SNV . 0 40 hm5C_associated_SNPs_26490 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 41bp
chr7 142459838 142459838 1 + G A LUAD 142459821 + 142459801 142459841 41 TCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGC TCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAATGC < 41bp 1 0.287183475502149 1 0.473943024873734 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459821 chr7:142459838 synonymous SNV . 0 38 hm5C_associated_SNPs_26491 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 41bp
chr7 142459838 142459838 1 + G A LUAD 142459822 + 142459802 142459842 41 CTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCC CTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAATGCC < 41bp 1 0.379170046274515 1 0.437045395374298 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459822 chr7:142459838 synonymous SNV . 0 37 hm5C_associated_SNPs_26492 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 41bp
chr7 142459838 142459838 1 + G A LUAD 142459825 + 142459805 142459845 41 TCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCA TCTGCCCACCGCCCCTCCAGCCACTGGCACGAAATGCCTCA < 41bp 1 0.379122329480961 1 0.129204720258713 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459825 chr7:142459838 synonymous SNV . 0 34 hm5C_associated_SNPs_26493 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 41bp
chr7 142459838 142459838 1 + G A LUAD 142459826 + 142459806 142459846 41 CTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCAT CTGCCCACCGCCCCTCCAGCCACTGGCACGAAATGCCTCAT < 41bp 1 0.65116827214839 1 0.195469975471497 experiment 0.69766345570322 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459826 chr7:142459838 synonymous SNV . 0 33 hm5C_associated_SNPs_26494 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 41bp
chr7 142459838 142459838 1 + G A LUAD 142459828 + 142459808 142459848 41 GCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCT GCCCACCGCCCCTCCAGCCACTGGCACGAAATGCCTCATCT < 41bp 1 0.72597342596922 1 0.164717376232147 experiment 0.54805314806156 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459828 chr7:142459838 synonymous SNV . 0 31 hm5C_associated_SNPs_26495 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 41bp
chr7 142459838 142459838 1 + G A LUAD 142459834 + 142459814 142459854 41 CGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCTCTGGCT CGCCCCTCCAGCCACTGGCACGAAATGCCTCATCTCTGGCT < 41bp 1 0.730441275730042 1 0.146929860115051 experiment 0.539117448539916 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459834 chr7:142459838 synonymous SNV . 0 25 hm5C_associated_SNPs_26496 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 41bp
chr7 142459838 142459838 1 + G A LUAD 142459841 + 142459821 142459861 41 CCAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAA CCAGCCACTGGCACGAAATGCCTCATCTCTGGCTGGGGCAA < 41bp 1 0.46310864546103 1 0.0528034865856171 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459841 chr7:142459838 synonymous SNV . 0 18 hm5C_associated_SNPs_26497 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 41bp
chr7 142459838 142459838 1 + G A LUAD 142459842 + 142459822 142459862 41 CAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAC CAGCCACTGGCACGAAATGCCTCATCTCTGGCTGGGGCAAC < 41bp 1 0.511234286382635 1 0.0557262301445007 experiment 0.97753142723473 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459842 chr7:142459838 synonymous SNV . 0 17 hm5C_associated_SNPs_26498 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 41bp
chr7 142459838 142459838 1 + G A LUAD 142459844 + 142459824 142459864 41 GCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACAC GCCACTGGCACGAAATGCCTCATCTCTGGCTGGGGCAACAC < 41bp 1 0.497631284844835 1 0.0147027671337128 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459844 chr7:142459838 synonymous SNV . 0 15 hm5C_associated_SNPs_26499 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 41bp
chr7 142459838 142459838 1 + G A LUAD 142459847 + 142459827 142459867 41 ACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACACTGC ACTGGCACGAAATGCCTCATCTCTGGCTGGGGCAACACTGC < 41bp 1 0.73261733241991 1 0.373617798089981 experiment 0.534765335160181 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459847 chr7:142459838 synonymous SNV . 0 12 hm5C_associated_SNPs_26500 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 41bp
chrX 123229240 123229240 1 + C T LUAD 123229250 + 123229230 123229270 41 AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT AAAGAACAGATGAGAGAGAACAGAACTGAAGCCTGATTTCT < 41bp 1 0.48715098528096 1 0.476609528064728 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123229250 chrX:123229240 stopgain 0.996 1 11 hm5C_associated_SNPs_26501 0 0 1 0 2 STAG2 chrX:123229222 3'AG 123229222 Downstream 19bp
chrX 123229240 123229240 1 + C T LUAD 123229250 + 123229230 123229270 41 AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT AAAGAACAGATGAGAGAGAACAGAACTGAAGCCTGATTTCT < 41bp 1 0.48715098528096 1 0.476609528064728 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123229250 chrX:123229240 stopgain 0.996 1 11 hm5C_associated_SNPs_26501 0 0 1 0 2 STAG2 chrX:123229299 5'GT 123229299 Upstream 60bp
chr7 56129515 56129515 1 + C G LUAD 56129510 + 56129490 56129530 41 TCAAGCAGAACATTCAGAATCAGGTCAGCTTGTGGGTGTGG TCAAGCAGAACATTCAGAATCAGGTGAGCTTGTGGGTGTGG < 41bp 1 0.707426429571582 1 0.630493104457855 experiment 0.585147140856836 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCT6A ENSG00000146731 CDS Human protein_coding chr7:56129510 chr7:56129515 nonsynonymous SNV 0.991 1 26 hm5C_associated_SNPs_26503 0 0 1 0 2 CCT6A chr7:56129440 3'AG 56129440 Downstream 76bp
chr7 56129515 56129515 1 + C G LUAD 56129510 + 56129490 56129530 41 TCAAGCAGAACATTCAGAATCAGGTCAGCTTGTGGGTGTGG TCAAGCAGAACATTCAGAATCAGGTGAGCTTGTGGGTGTGG < 41bp 1 0.707426429571582 1 0.630493104457855 experiment 0.585147140856836 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCT6A ENSG00000146731 CDS Human protein_coding chr7:56129510 chr7:56129515 nonsynonymous SNV 0.991 1 26 hm5C_associated_SNPs_26503 0 0 1 0 2 CCT6A chr7:56129542 5'GT 56129542 Upstream 28bp
chr17 43311087 43311087 1 + G C LUAD 43311084 + 43311064 43311104 41 CTCGAGTACCTGGCCTTTGCCCAGTGCTCTGTCACGTAAGC CTCGAGTACCTGGCCTTTGCCCACTGCTCTGTCACGTAAGC < 41bp 1 0.137364219480612 1 0.328509449958801 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43311084 chr17:43311087 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_26504 0 0 1 0 2 FMNL1 chr17:43311015 3'AG 43311015 Downstream 73bp
chr17 43311087 43311087 1 + G C LUAD 43311084 + 43311064 43311104 41 CTCGAGTACCTGGCCTTTGCCCAGTGCTCTGTCACGTAAGC CTCGAGTACCTGGCCTTTGCCCACTGCTCTGTCACGTAAGC < 41bp 1 0.137364219480612 1 0.328509449958801 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43311084 chr17:43311087 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_26504 0 0 1 0 2 FMNL1 chr17:43311098 5'GT 43311098 Upstream 12bp
chr13 48941720 48941720 1 + C T LUAD 48941724 + 48941704 48941744 41 TCATGATAAAACTCTTCAGACTGATTCTATAGACAGGTATT TCATGATAAAACTCTTTAGACTGATTCTATAGACAGGTATT < 41bp 1 0.209498142984453 1 0.0518398582935333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RB1 ENSG00000139687 CDS Human protein_coding chr13:48941724 chr13:48941720 stopgain 1.000 0 17 hm5C_associated_SNPs_26505 0 0 1 0 2 RB1 chr13:48941630 3'AG 48941630 Downstream 91bp
chr13 48941720 48941720 1 + C T LUAD 48941724 + 48941704 48941744 41 TCATGATAAAACTCTTCAGACTGATTCTATAGACAGGTATT TCATGATAAAACTCTTTAGACTGATTCTATAGACAGGTATT < 41bp 1 0.209498142984453 1 0.0518398582935333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RB1 ENSG00000139687 CDS Human protein_coding chr13:48941724 chr13:48941720 stopgain 1.000 0 17 hm5C_associated_SNPs_26505 0 0 1 0 2 RB1 chr13:48941739 5'GT 48941739 Upstream 20bp
chr21 45736381 45736381 1 + A T LUAD 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACGTGCAGCGGGGAGGGTCGCCCTCTGCCTTCGACCGGA < 41bp 1 0.45573141298118 1 0.291431844234467 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736381 nonsynonymous SNV 0.454 1 20 hm5C_associated_SNPs_26508 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 67bp
chr21 45736381 45736381 1 + A T LUAD 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACGTGCAGCGGGGAGGGTCGCCCTCTGCCTTCGACCGGA < 41bp 1 0.45573141298118 1 0.291431844234467 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736381 nonsynonymous SNV 0.454 1 20 hm5C_associated_SNPs_26508 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 27bp
chr21 45736381 45736381 1 + A T LUAD 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACGTGCAGCGGGGAGGGTCGCCCTCTGCCTTCGACCGGATC < 41bp 1 0.0824087433283363 1 0.179296791553497 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736381 nonsynonymous SNV 0.454 1 18 hm5C_associated_SNPs_26509 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 67bp
chr21 45736381 45736381 1 + A T LUAD 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACGTGCAGCGGGGAGGGTCGCCCTCTGCCTTCGACCGGATC < 41bp 1 0.0824087433283363 1 0.179296791553497 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736381 nonsynonymous SNV 0.454 1 18 hm5C_associated_SNPs_26509 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 27bp
chr21 45736381 45736381 1 + A T LUAD 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CGTGCAGCGGGGAGGGTCGCCCTCTGCCTTCGACCGGATCC < 41bp 1 0.0945408498300253 1 0.0797519385814667 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736381 nonsynonymous SNV 0.454 1 17 hm5C_associated_SNPs_26510 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 67bp
chr21 45736381 45736381 1 + A T LUAD 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CGTGCAGCGGGGAGGGTCGCCCTCTGCCTTCGACCGGATCC < 41bp 1 0.0945408498300253 1 0.0797519385814667 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736381 nonsynonymous SNV 0.454 1 17 hm5C_associated_SNPs_26510 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 27bp
chr21 45736381 45736381 1 + A T LUAD 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT GTGCAGCGGGGAGGGTCGCCCTCTGCCTTCGACCGGATCCT < 41bp 1 0.391490995512808 1 0.453803807497025 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736381 nonsynonymous SNV 0.454 1 16 hm5C_associated_SNPs_26511 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 67bp
chr21 45736381 45736381 1 + A T LUAD 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT GTGCAGCGGGGAGGGTCGCCCTCTGCCTTCGACCGGATCCT < 41bp 1 0.391490995512808 1 0.453803807497025 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736381 nonsynonymous SNV 0.454 1 16 hm5C_associated_SNPs_26511 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 27bp
chr15 69548656 69548656 1 + G A LUAD 69548650 + 69548630 69548670 41 ATGCACAGAGAGCCCCCTATCACCCCGATGGTGTGTTTATG ATGCACAGAGAGCCCCCTATCACCCCAATGGTGTGTTTATG < 41bp 1 0.406626665340816 1 0.38520148396492 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GLCE ENSG00000138604 CDS Human protein_coding chr15:69548650 chr15:69548656 nonsynonymous SNV 0.483 1 27 hm5C_associated_SNPs_26512 0 0 0 0 1 GLCE chr15:69548731 5'GT 69548731 Upstream 76bp
chr15 69548656 69548656 1 + G A LUAD 69548655 + 69548635 69548675 41 CAGAGAGCCCCCTATCACCCCGATGGTGTGTTTATGTCTTT CAGAGAGCCCCCTATCACCCCAATGGTGTGTTTATGTCTTT < 41bp 1 0.280871085355755 1 0.131332099437714 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GLCE ENSG00000138604 CDS Human protein_coding chr15:69548655 chr15:69548656 nonsynonymous SNV 0.483 1 22 hm5C_associated_SNPs_26513 0 0 0 0 1 GLCE chr15:69548731 5'GT 69548731 Upstream 76bp
chrX 152088940 152088940 1 + C A LUAD 152088929 + 152088909 152088949 41 CCCCGGGAGCACTCCTACGTCCTGTCAGCGGCCAAGAAGAG CCCCGGGAGCACTCCTACGTCCTGTCAGCGGACAAGAAGAG < 41bp 1 0.147341702417223 1 0.11635223031044 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152088929 chrX:152088940 nonsynonymous SNV 0.359 3 32 hm5C_associated_SNPs_26514 0 0 0 0 1 ZNF185 chrX:152088955 5'GT 152088955 Upstream 16bp
chr17 57644041 57644041 1 + C G LUAD 57644036 + 57644016 57644056 41 AGGAACTACTCCAACTTTTCCTATTCAGAAACAAAGAAAAA AGGAACTACTCCAACTTTTCCTATTGAGAAACAAAGAAAAA < 41bp 1 0.155932237173101 1 0.128962606191635 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX40 ENSG00000108406 CDS Human protein_coding chr17:57644036 chr17:57644041 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_26517 0 0 1 0 2 DHX40 chr17:57643988 3'AG 57643988 Downstream 54bp
chr17 57644041 57644041 1 + C G LUAD 57644036 + 57644016 57644056 41 AGGAACTACTCCAACTTTTCCTATTCAGAAACAAAGAAAAA AGGAACTACTCCAACTTTTCCTATTGAGAAACAAAGAAAAA < 41bp 1 0.155932237173101 1 0.128962606191635 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX40 ENSG00000108406 CDS Human protein_coding chr17:57644036 chr17:57644041 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_26517 0 0 1 0 2 DHX40 chr17:57644070 5'GT 57644070 Upstream 30bp
chr13 48941739 48941739 1 + G T LUAD 48941724 + 48941704 48941744 41 TCATGATAAAACTCTTCAGACTGATTCTATAGACAGGTATT TCATGATAAAACTCTTCAGACTGATTCTATAGACATGTATT < 41bp 1 0.156471378555561 1 0.0509768426418304 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RB1 ENSG00000139687 CDS Human protein_coding chr13:48941724 chr13:48941739 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_26518 0 0 0 0 1 RB1 chr13:48941739 5'GT 48941739 Upstream 1bp
chr11 62545512 62545512 1 + C G LUAD 62545497 + 62545477 62545517 41 GCACTGCCCATGCGCCCCGCCAGGGAGGGTGAACTCTACTT GCACTGCCCATGCGCCCCGCCAGGGAGGGTGAACTGTACTT < 41bp 1 0.745156082628384 1 0.737807393074036 experiment 0.509687834743231 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF6L ENSG00000162227 CDS Human protein_coding chr11:62545497 chr11:62545512 synonymous SNV . 0 36 hm5C_associated_SNPs_26519 0 0 1 0 2 TAF6L chr11:62545450 3'AG 62545450 Downstream 63bp
chr11 62545512 62545512 1 + C G LUAD 62545497 + 62545477 62545517 41 GCACTGCCCATGCGCCCCGCCAGGGAGGGTGAACTCTACTT GCACTGCCCATGCGCCCCGCCAGGGAGGGTGAACTGTACTT < 41bp 1 0.745156082628384 1 0.737807393074036 experiment 0.509687834743231 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF6L ENSG00000162227 CDS Human protein_coding chr11:62545497 chr11:62545512 synonymous SNV . 0 36 hm5C_associated_SNPs_26519 0 0 1 0 2 TAF6L chr11:62545600 5'GT 62545600 Upstream 89bp
chr7 130021012 130021012 1 + C T LUAD 130021005 + 130020985 130021025 41 AAGGTGAAGGAGCTGGAGGACCTGGAGCACCTGCAGGTCAG AAGGTGAAGGAGCTGGAGGACCTGGAGTACCTGCAGGTCAG < 41bp 1 0.377291491981143 1 0.158527582883835 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021005 chr7:130021012 nonsynonymous SNV 0.995 0 28 hm5C_associated_SNPs_26521 0 0 0 0 2 CPA1 chr7:130020939 3'AG 130020939 Downstream 74bp
chr7 130021012 130021012 1 + C T LUAD 130021005 + 130020985 130021025 41 AAGGTGAAGGAGCTGGAGGACCTGGAGCACCTGCAGGTCAG AAGGTGAAGGAGCTGGAGGACCTGGAGTACCTGCAGGTCAG < 41bp 1 0.377291491981143 1 0.158527582883835 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021005 chr7:130021012 nonsynonymous SNV 0.995 0 28 hm5C_associated_SNPs_26521 0 0 0 0 2 CPA1 chr7:130021020 5'GT 130021020 Upstream 9bp
chr7 130021012 130021012 1 + C T LUAD 130021014 + 130020994 130021034 41 GAGCTGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGGGA GAGCTGGAGGACCTGGAGTACCTGCAGGTCAGAAGAGGGGA < 41bp 1 0.147628661531185 1 0.151678144931793 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021014 chr7:130021012 nonsynonymous SNV 0.995 0 19 hm5C_associated_SNPs_26522 0 0 0 0 2 CPA1 chr7:130020939 3'AG 130020939 Downstream 74bp
chr7 130021012 130021012 1 + C T LUAD 130021014 + 130020994 130021034 41 GAGCTGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGGGA GAGCTGGAGGACCTGGAGTACCTGCAGGTCAGAAGAGGGGA < 41bp 1 0.147628661531185 1 0.151678144931793 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021014 chr7:130021012 nonsynonymous SNV 0.995 0 19 hm5C_associated_SNPs_26522 0 0 0 0 2 CPA1 chr7:130021020 5'GT 130021020 Upstream 9bp
chr7 130021012 130021012 1 + C T LUAD 130021018 + 130020998 130021038 41 TGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGGGAGAAG TGGAGGACCTGGAGTACCTGCAGGTCAGAAGAGGGGAGAAG < 41bp 1 0.619685931260189 1 0.630238890647888 experiment 0.760628137479622 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021018 chr7:130021012 nonsynonymous SNV 0.995 0 15 hm5C_associated_SNPs_26523 0 0 0 0 2 CPA1 chr7:130020939 3'AG 130020939 Downstream 74bp
chr7 130021012 130021012 1 + C T LUAD 130021018 + 130020998 130021038 41 TGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGGGAGAAG TGGAGGACCTGGAGTACCTGCAGGTCAGAAGAGGGGAGAAG < 41bp 1 0.619685931260189 1 0.630238890647888 experiment 0.760628137479622 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021018 chr7:130021012 nonsynonymous SNV 0.995 0 15 hm5C_associated_SNPs_26523 0 0 0 0 2 CPA1 chr7:130021020 5'GT 130021020 Upstream 9bp
chr11 71946167 71946167 1 + C G LUAD 71946183 + 71946163 71946203 41 AAACCAATTCTGGCTGATATCGAGTACCTGCAGGACCAGCA AAACGAATTCTGGCTGATATCGAGTACCTGCAGGACCAGCA < 41bp 1 0.651027329448511 1 0.831960439682007 experiment 0.697945341102978 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946183 chr11:71946167 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_26524 0 0 1 0 2 INPPL1 chr11:71946160 3'AG 71946160 Downstream 8bp
chr11 71946167 71946167 1 + C G LUAD 71946183 + 71946163 71946203 41 AAACCAATTCTGGCTGATATCGAGTACCTGCAGGACCAGCA AAACGAATTCTGGCTGATATCGAGTACCTGCAGGACCAGCA < 41bp 1 0.651027329448511 1 0.831960439682007 experiment 0.697945341102978 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946183 chr11:71946167 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_26524 0 0 1 0 2 INPPL1 chr11:71946247 5'GT 71946247 Upstream 81bp
chr7 142458454 142458454 1 + G A LUAD 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTATGA < 41bp 1 0.205294410606324 1 0.0964337289333344 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458454 nonsynonymous SNV 0.022 5 38 hm5C_associated_SNPs_26525 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 49bp
chr7 142458454 142458454 1 + G A LUAD 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGTTGGGGGCTACAACTATGAGGAGAATTC < 41bp 1 0.319087142525255 1 0.370607137680054 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458454 nonsynonymous SNV 0.022 5 29 hm5C_associated_SNPs_26526 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 49bp
chr7 142458454 142458454 1 + G A LUAD 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGTTGGGGGCTACAACTATGAGGAGAATTCTGT < 41bp 1 0.135489963964536 1 0.161931902170181 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458454 nonsynonymous SNV 0.022 5 26 hm5C_associated_SNPs_26527 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 49bp
chr7 142458454 142458454 1 + G A LUAD 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGCTACAACTATGAGGAGAATTCTGTCCC < 41bp 1 0.296419252879791 1 0.15296083688736 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458454 nonsynonymous SNV 0.022 5 23 hm5C_associated_SNPs_26528 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 49bp
chr7 142458454 142458454 1 + G A LUAD 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTATGAGGAGAATTCTGTCCCCTACCAGGTGTCCC < 41bp 1 0.121596982702306 1 0.0935375094413757 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458454 nonsynonymous SNV 0.022 5 9 hm5C_associated_SNPs_26529 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 49bp
chr7 142458454 142458454 1 + G A LUAD 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTATGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA < 41bp 1 0.130898881492144 1 0.270733416080475 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458454 nonsynonymous SNV 0.022 5 5 hm5C_associated_SNPs_26530 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 49bp
chr7 142458454 142458454 1 + G A LUAD 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTATGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT < 41bp 1 0.108727764414003 1 0.154587954282761 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458454 nonsynonymous SNV 0.022 5 4 hm5C_associated_SNPs_26531 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 49bp
chr7 142458454 142458454 1 + G A LUAD 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTATGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT < 41bp 1 0.015533250072982 1 0.0794515311717987 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458454 nonsynonymous SNV 0.022 5 3 hm5C_associated_SNPs_26532 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 49bp
chr7 142458454 142458454 1 + G A LUAD 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TATGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC < 41bp 1 0.136674097021913 1 0.0536071360111237 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458454 nonsynonymous SNV 0.022 5 2 hm5C_associated_SNPs_26533 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 49bp
chr14 90437534 90437534 1 + G T LUAD 90437526 + 90437506 90437546 41 GCTCTCTTTTTAGGAAGAAGCCAATCCTGCTTGTGCATGGT GCTCTCTTTTTAGGAAGAAGCCAATCCTTCTTGTGCATGGT < 41bp 1 0.057596082320162 1 0.111792951822281 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TDP1 ENSG00000042088 CDS Human protein_coding chr14:90437526 chr14:90437534 synonymous SNV . 0 29 hm5C_associated_SNPs_26534 0 0 1 0 2 TDP1 chr14:90437519 3'AG 90437519 Downstream 16bp
chr14 90437534 90437534 1 + G T LUAD 90437526 + 90437506 90437546 41 GCTCTCTTTTTAGGAAGAAGCCAATCCTGCTTGTGCATGGT GCTCTCTTTTTAGGAAGAAGCCAATCCTTCTTGTGCATGGT < 41bp 1 0.057596082320162 1 0.111792951822281 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TDP1 ENSG00000042088 CDS Human protein_coding chr14:90437526 chr14:90437534 synonymous SNV . 0 29 hm5C_associated_SNPs_26534 0 0 1 0 2 TDP1 chr14:90437615 5'GT 90437615 Upstream 82bp
chr20 62374330 62374330 1 + G T LUAD 62374321 + 62374301 62374341 41 AGCCTGCCGCTGGAAGAAAGCCTGCCAGCGGTTCCTGGACT AGCCTGCCGCTGGAAGAAAGCCTGCCAGCTGTTCCTGGACT < 41bp 1 0.130509782543558 1 0.189883172512054 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62374321 chr20:62374330 nonsynonymous SNV 0.984 3 30 hm5C_associated_SNPs_26535 0 0 1 0 1 SLC2A4RG chr20:62374232 3'AG 62374232 Downstream 99bp
chr8 143782017 143782017 1 + A T LUAD 143782018 + 143781998 143782038 41 ACGCCAACCTGACTGCGAGACAACGAGATCCAGAGGACTCC ACGCCAACCTGACTGCGAGTCAACGAGATCCAGAGGACTCC < 41bp 1 0.70117539508762 1 0.224282652139664 experiment 0.59764920982476 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LY6K ENSG00000160886 CDS Human protein_coding chr8:143782018 chr8:143782017 nonsynonymous SNV 0.188 1 20 hm5C_associated_SNPs_26536 0 0 1 0 1 LY6K chr8:143782048 5'GT 143782048 Upstream 32bp
chr17 57728627 57728627 1 + G A LUAD 57728643 + 57728623 57728663 41 AGTGGATGTCTTCTTTCCTCCAGAAGCACAAAATGATTTTC AGTGAATGTCTTCTTTCCTCCAGAAGCACAAAATGATTTTC < 41bp 1 0.491769316598084 1 0.740119934082031 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57728643 chr17:57728627 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_26537 0 0 1 0 2 CLTC chr17:57728564 3'AG 57728564 Downstream 64bp
chr17 57728627 57728627 1 + G A LUAD 57728643 + 57728623 57728663 41 AGTGGATGTCTTCTTTCCTCCAGAAGCACAAAATGATTTTC AGTGAATGTCTTCTTTCCTCCAGAAGCACAAAATGATTTTC < 41bp 1 0.491769316598084 1 0.740119934082031 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57728643 chr17:57728627 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_26537 0 0 1 0 2 CLTC chr17:57728677 5'GT 57728677 Upstream 51bp
chr7 142460411 142460411 1 + C T LUAD 142460391 + 142460371 142460411 41 AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTT < 41bp 1 0.0271210533260888 1 0.0765614807605743 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460391 chr7:142460411 nonsynonymous SNV 0.962 3 41 hm5C_associated_SNPs_26539 0 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 8bp
chr7 142460411 142460411 1 + C T LUAD 142460392 + 142460372 142460412 41 ACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA ACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTTA < 41bp 1 0.585416975099043 1 0.397889822721481 experiment 0.829166049801913 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460392 chr7:142460411 nonsynonymous SNV 0.962 3 40 hm5C_associated_SNPs_26540 0 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 8bp
chr7 142460411 142460411 1 + C T LUAD 142460403 + 142460383 142460423 41 GTGGGCTTCCTTGAGGGAGGCAAGGATTCATGTCAGGTGAT GTGGGCTTCCTTGAGGGAGGCAAGGATTTATGTCAGGTGAT < 41bp 1 0.521233218775499 1 0.42018848657608 experiment 0.957533562449003 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460403 chr7:142460411 nonsynonymous SNV 0.962 3 29 hm5C_associated_SNPs_26541 0 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 8bp
chr7 142460411 142460411 1 + C T LUAD 142460416 + 142460396 142460436 41 AGGGAGGCAAGGATTCATGTCAGGTGATTTGACCAACCCTT AGGGAGGCAAGGATTTATGTCAGGTGATTTGACCAACCCTT < 41bp 1 0.625806397370236 1 0.805195271968842 experiment 0.748387205259527 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460416 chr7:142460411 nonsynonymous SNV 0.962 3 16 hm5C_associated_SNPs_26542 0 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 8bp
chr1 161751777 161751777 1 + C T LUAD 161751776 + 161751756 161751796 41 GACATTTGGGACATCAACAACCAAATCTGTACAGGTAATTA GACATTTGGGACATCAACAACTAAATCTGTACAGGTAATTA < 41bp 1 0.35391538720338 1 0.262138694524765 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161751776 chr1:161751777 stopgain 0.854 0 22 hm5C_associated_SNPs_26544 0 0 1 0 2 ATF6 chr1:161751702 3'AG 161751702 Downstream 76bp
chr1 161751777 161751777 1 + C T LUAD 161751776 + 161751756 161751796 41 GACATTTGGGACATCAACAACCAAATCTGTACAGGTAATTA GACATTTGGGACATCAACAACTAAATCTGTACAGGTAATTA < 41bp 1 0.35391538720338 1 0.262138694524765 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161751776 chr1:161751777 stopgain 0.854 0 22 hm5C_associated_SNPs_26544 0 0 1 0 2 ATF6 chr1:161751789 5'GT 161751789 Upstream 13bp
chr7 142460317 142460317 1 + C T LUAD 142460299 + 142460279 142460319 41 CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTTCT < 41bp 1 0.650715084787553 1 0.234076261520386 experiment 0.698569830424894 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460299 chr7:142460317 nonsynonymous SNV 0.003 2 39 hm5C_associated_SNPs_26545 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 36bp
chr7 142460317 142460317 1 + C T LUAD 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTTCTGTG < 41bp 1 0.236792683484552 1 0.128751754760742 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460317 nonsynonymous SNV 0.003 2 36 hm5C_associated_SNPs_26546 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 36bp
chr7 142460317 142460317 1 + C T LUAD 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGCCTGGATGCTTCTGTGCTGAG < 41bp 1 0.17795839950116 1 0.121344387531281 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460317 nonsynonymous SNV 0.003 2 31 hm5C_associated_SNPs_26547 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 36bp
chr7 142460317 142460317 1 + C T LUAD 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGGATGCTTCTGTGCTGAGCCAGGCTA < 41bp 1 0.197783832767921 1 0.105800539255142 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460317 nonsynonymous SNV 0.003 2 23 hm5C_associated_SNPs_26548 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 36bp
chr7 142460317 142460317 1 + C T LUAD 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGGATGCTTCTGTGCTGAGCCAGGCTAAGT < 41bp 1 0.548741559241737 1 0.265471279621124 experiment 0.902516881516527 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460317 nonsynonymous SNV 0.003 2 20 hm5C_associated_SNPs_26549 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 36bp
chr7 142460317 142460317 1 + C T LUAD 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATGCTTCTGTGCTGAGCCAGGCTAAGTGTGAA < 41bp 1 0.486161082017019 1 0.105875253677368 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460317 nonsynonymous SNV 0.003 2 15 hm5C_associated_SNPs_26550 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 36bp
chr7 142460317 142460317 1 + C T LUAD 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTTCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC < 41bp 1 0.357417095018589 1 0.22456231713295 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460317 nonsynonymous SNV 0.003 2 10 hm5C_associated_SNPs_26551 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 36bp
chr7 142460317 142460317 1 + C T LUAD 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTTCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC < 41bp 1 0.52778281045729 1 0.647912383079529 experiment 0.944434379085419 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460317 nonsynonymous SNV 0.003 2 9 hm5C_associated_SNPs_26552 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 36bp
chr7 142460317 142460317 1 + C T LUAD 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTTCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC < 41bp 1 0.376342617559312 1 0.132927566766739 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460317 nonsynonymous SNV 0.003 2 5 hm5C_associated_SNPs_26553 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 36bp
chr1 12061527 12061527 1 + C T LUAD 12061544 + 12061524 12061564 41 TCCCAGGCCGGGGACCGCATCTTCTTTGTGTCTGCTAAGGA TCCTAGGCCGGGGACCGCATCTTCTTTGTGTCTGCTAAGGA < 41bp 1 0.265180094551695 1 0.083954930305481 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061544 chr1:12061527 stopgain 0.943 1 4 hm5C_associated_SNPs_26554 0 0 1 0 2 MFN2 chr1:12061458 3'AG 12061458 Downstream 70bp
chr1 12061527 12061527 1 + C T LUAD 12061544 + 12061524 12061564 41 TCCCAGGCCGGGGACCGCATCTTCTTTGTGTCTGCTAAGGA TCCTAGGCCGGGGACCGCATCTTCTTTGTGTCTGCTAAGGA < 41bp 1 0.265180094551695 1 0.083954930305481 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061544 chr1:12061527 stopgain 0.943 1 4 hm5C_associated_SNPs_26554 0 0 1 0 2 MFN2 chr1:12061611 5'GT 12061611 Upstream 85bp
chr2 98263846 98263846 1 + A T LUAD 98263858 + 98263838 98263878 41 CTTCAGGCACCAGGGAAGACCCTAATTTAGTCCCCTCCATC CTTCAGGCTCCAGGGAAGACCCTAATTTAGTCCCCTCCATC < 41bp 1 0.328903541347873 1 0.0337239801883698 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control COX5B ENSG00000135940 CDS Human protein_coding chr2:98263858 chr2:98263846 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_26555 0 0 1 0 2 COX5B chr2:98263807 3'AG 98263807 Downstream 40bp
chr2 98263846 98263846 1 + A T LUAD 98263858 + 98263838 98263878 41 CTTCAGGCACCAGGGAAGACCCTAATTTAGTCCCCTCCATC CTTCAGGCTCCAGGGAAGACCCTAATTTAGTCCCCTCCATC < 41bp 1 0.328903541347873 1 0.0337239801883698 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control COX5B ENSG00000135940 CDS Human protein_coding chr2:98263858 chr2:98263846 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_26555 0 0 1 0 2 COX5B chr2:98263906 5'GT 98263906 Upstream 61bp
chr12 6635486 6635486 1 + C T LUAD 6635482 + 6635462 6635502 41 GGCAAACGTCACCCCCCCTTCCGGCTGCCTCAGGAACACAG GGCAAACGTCACCCCCCCTTCCGGTTGCCTCAGGAACACAG < 41bp 1 0.399824476176789 1 0.47621613740921 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6635482 chr12:6635486 synonymous SNV . 0 25 hm5C_associated_SNPs_26557 0 0 1 0 2 NCAPD2 chr12:6635453 3'AG 6635453 Downstream 34bp
chr12 6635486 6635486 1 + C T LUAD 6635482 + 6635462 6635502 41 GGCAAACGTCACCCCCCCTTCCGGCTGCCTCAGGAACACAG GGCAAACGTCACCCCCCCTTCCGGTTGCCTCAGGAACACAG < 41bp 1 0.399824476176789 1 0.47621613740921 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6635482 chr12:6635486 synonymous SNV . 0 25 hm5C_associated_SNPs_26557 0 0 1 0 2 NCAPD2 chr12:6635537 5'GT 6635537 Upstream 52bp
chr19 1434826 1434826 1 + G T LUAD 1434836 + 1434816 1434856 41 TCCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGG TCCGTGCCAGTGTCGGGGGGCCCCCCCGCCGGCGGCAGCGG < 41bp 1 0.282393828816495 1 0.117927610874176 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434836 chr19:1434826 nonsynonymous SNV 0.960 1 11 hm5C_associated_SNPs_26558 0 0 1 0 1 DAZAP1 chr19:1434736 3'AG 1434736 Downstream 91bp
chr19 1434826 1434826 1 + G T LUAD 1434837 + 1434817 1434857 41 CCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGC CCGTGCCAGTGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGC < 41bp 1 0.357945158792271 1 0.105299979448318 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434837 chr19:1434826 nonsynonymous SNV 0.960 1 10 hm5C_associated_SNPs_26559 0 0 1 0 1 DAZAP1 chr19:1434736 3'AG 1434736 Downstream 91bp
chr19 1434826 1434826 1 + G T LUAD 1434838 + 1434818 1434858 41 CGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCT CGTGCCAGTGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCT < 41bp 1 0.455051863275202 1 0.437694728374481 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434838 chr19:1434826 nonsynonymous SNV 0.960 1 9 hm5C_associated_SNPs_26560 0 0 1 0 1 DAZAP1 chr19:1434736 3'AG 1434736 Downstream 91bp
chr19 1434826 1434826 1 + G T LUAD 1434839 + 1434819 1434859 41 GTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCTT GTGCCAGTGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCTT < 41bp 1 0.72026673347601 1 0.139312982559204 experiment 0.55946653304798 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434839 chr19:1434826 nonsynonymous SNV 0.960 1 8 hm5C_associated_SNPs_26561 0 0 1 0 1 DAZAP1 chr19:1434736 3'AG 1434736 Downstream 91bp
chr19 39948326 39948326 1 + G C LUAD 39948343 + 39948323 39948363 41 GATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA GATCAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA < 41bp 1 0.272523606517295 1 0.156036287546158 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948343 chr19:39948326 nonsynonymous SNV 0.986 3 4 hm5C_associated_SNPs_26562 0 0 1 0 2 SUPT5H chr19:39948315 3'AG 39948315 Downstream 12bp
chr19 39948326 39948326 1 + G C LUAD 39948343 + 39948323 39948363 41 GATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA GATCAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA < 41bp 1 0.272523606517295 1 0.156036287546158 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948343 chr19:39948326 nonsynonymous SNV 0.986 3 4 hm5C_associated_SNPs_26562 0 0 1 0 2 SUPT5H chr19:39948380 5'GT 39948380 Upstream 55bp
chr19 39948326 39948326 1 + G C LUAD 39948344 + 39948324 39948364 41 ATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGAG ATCAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGAG < 41bp 1 0.527111049441185 1 0.310155034065247 experiment 0.94577790111763 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948344 chr19:39948326 nonsynonymous SNV 0.986 3 3 hm5C_associated_SNPs_26563 0 0 1 0 2 SUPT5H chr19:39948315 3'AG 39948315 Downstream 12bp
chr19 39948326 39948326 1 + G C LUAD 39948344 + 39948324 39948364 41 ATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGAG ATCAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGAG < 41bp 1 0.527111049441185 1 0.310155034065247 experiment 0.94577790111763 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948344 chr19:39948326 nonsynonymous SNV 0.986 3 3 hm5C_associated_SNPs_26563 0 0 1 0 2 SUPT5H chr19:39948380 5'GT 39948380 Upstream 55bp
chr2 167108323 167108323 1 - C T LUAD 167108313 - 167108293 167108333 41 AGAAGAAGCAGAGGCTGAACCTATGAATTCCGATGAGCCAG AGAAGAAGCAAAGGCTGAACCTATGAATTCCGATGAGCCAG < 41bp 1 0.385462051592107 1 0.504385113716125 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SCN9A ENSG00000169432 CDS Human protein_coding chr2:167108313 chr2:167108323 nonsynonymous SNV 0.997 1 11 hm5C_associated_SNPs_26564 0 0 0 0 2 SCN9A chr2:167108275 5'GT 167108275 Upstream 49bp
chr2 167108323 167108323 1 - C T LUAD 167108313 - 167108293 167108333 41 AGAAGAAGCAGAGGCTGAACCTATGAATTCCGATGAGCCAG AGAAGAAGCAAAGGCTGAACCTATGAATTCCGATGAGCCAG < 41bp 1 0.385462051592107 1 0.504385113716125 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SCN9A ENSG00000169432 CDS Human protein_coding chr2:167108313 chr2:167108323 nonsynonymous SNV 0.997 1 11 hm5C_associated_SNPs_26564 0 0 0 0 2 SCN9A chr2:167108395 3'AG 167108395 Downstream 73bp
chr5 179143205 179143205 1 + G A LUAD 179143220 + 179143200 179143240 41 TTCACGTGAAATTGAGGACCCAGAAGACCGGAAGCCCGAGG TTCACATGAAATTGAGGACCCAGAAGACCGGAAGCCCGAGG < 41bp 1 0.790210364702062 1 0.760367631912231 experiment 0.419579270595876 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179143220 chr5:179143205 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_26565 0 0 1 0 2 CANX chr5:179143106 3'AG 179143106 Downstream 100bp
chr5 179143205 179143205 1 + G A LUAD 179143220 + 179143200 179143240 41 TTCACGTGAAATTGAGGACCCAGAAGACCGGAAGCCCGAGG TTCACATGAAATTGAGGACCCAGAAGACCGGAAGCCCGAGG < 41bp 1 0.790210364702062 1 0.760367631912231 experiment 0.419579270595876 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179143220 chr5:179143205 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_26565 0 0 1 0 2 CANX chr5:179143295 5'GT 179143295 Upstream 91bp
chr16 57243045 57243045 1 + A T LUAD 57243043 + 57243023 57243063 41 GAGTTATTCCACTGGAAGATCCACTGGGACCAGCTGTTATA GAGTTATTCCACTGGAAGATCCTCTGGGACCAGCTGTTATA < 41bp 1 0.0712323257144311 1 0.0638763010501862 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57243043 chr16:57243045 synonymous SNV . 0 23 hm5C_associated_SNPs_26566 0 0 1 0 2 RSPRY1 chr16:57242987 3'AG 57242987 Downstream 59bp
chr16 57243045 57243045 1 + A T LUAD 57243043 + 57243023 57243063 41 GAGTTATTCCACTGGAAGATCCACTGGGACCAGCTGTTATA GAGTTATTCCACTGGAAGATCCTCTGGGACCAGCTGTTATA < 41bp 1 0.0712323257144311 1 0.0638763010501862 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57243043 chr16:57243045 synonymous SNV . 0 23 hm5C_associated_SNPs_26566 0 0 1 0 2 RSPRY1 chr16:57243099 5'GT 57243099 Upstream 55bp
chr12 31236900 31236900 1 + G A LUAD 31236904 + 31236884 31236924 41 GTCTTCTTCCTGCGAAGGGGCTGCAGGCACCCCGAGGCCTG GTCTTCTTCCTGCGAAAGGGCTGCAGGCACCCCGAGGCCTG < 41bp 1 0.746286281117892 1 0.223526269197464 experiment 0.507427437764215 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDX11 ENSG00000013573;ENSG00000013573 exonic;splicing Human protein_coding chr12:31236904 chr12:31236900 nonsynonymous SNV 0.000 0 17 hm5C_associated_SNPs_26567 0 0 1 0 1 DDX11 chr12:31236995 5'GT 31236995 Upstream 96bp
chr8 145150923 145150923 1 + A T LUAD 145150914 + 145150894 145150934 41 GTCTCACCGTGGCCTCCTCTCTTCCTTGGACCACACCAGGT GTCTCACCGTGGCCTCCTCTCTTCCTTGGTCCACACCAGGT < 41bp 1 0.313712716929657 1 0.167755424976349 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145150914 chr8:145150923 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_26568 0 0 1 0 1 CYC1 chr8:145150932 5'GT 145150932 Upstream 10bp
chrX 118112367 118112367 1 + C A LUAD 118112379 + 118112359 118112399 41 TGGAGTCTCATGAGAATGCACTGCATGATGCAGAAATAGCA TGGAGTCTAATGAGAATGCACTGCATGATGCAGAAATAGCA < 41bp 1 0.491790852305217 1 0.112191468477249 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118112379 chrX:118112367 nonsynonymous SNV 1.000 0 9 hm5C_associated_SNPs_26570 0 0 1 0 2 LONRF3 chrX:118112308 3'AG 118112308 Downstream 60bp
chrX 118112367 118112367 1 + C A LUAD 118112379 + 118112359 118112399 41 TGGAGTCTCATGAGAATGCACTGCATGATGCAGAAATAGCA TGGAGTCTAATGAGAATGCACTGCATGATGCAGAAATAGCA < 41bp 1 0.491790852305217 1 0.112191468477249 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118112379 chrX:118112367 nonsynonymous SNV 1.000 0 9 hm5C_associated_SNPs_26570 0 0 1 0 2 LONRF3 chrX:118112426 5'GT 118112426 Upstream 60bp
chr19 8320499 8320499 1 + G A LUAD 8320515 + 8320495 8320535 41 AGCTGTCTCTCCTGGCCGCCCAGTGTGGCCTCACGCTGCAG AGCTATCTCTCCTGGCCGCCCAGTGTGGCCTCACGCTGCAG < 41bp 1 0.553412616885079 1 0.499053388834 experiment 0.893174766229842 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CERS4 ENSG00000090661 CDS Human protein_coding chr19:8320515 chr19:8320499 synonymous SNV . 0 5 hm5C_associated_SNPs_26571 0 0 1 0 1 CERS4 chr19:8320491 3'AG 8320491 Downstream 9bp
chr2 189873907 189873907 1 + C G LUAD 189873898 + 189873878 189873918 41 GATGGTTCTCGTAAAAACCCCGCTAGAAACTGCAGAGACCT GATGGTTCTCGTAAAAACCCCGCTAGAAAGTGCAGAGACCT < 41bp 1 0.282796560691965 1 0.378820776939392 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189873898 chr2:189873907 nonsynonymous SNV 0.999 2 30 hm5C_associated_SNPs_26573 0 0 0 0 1 COL3A1 chr2:189873947 5'GT 189873947 Upstream 41bp
chr20 5958578 5958578 1 + C T LUAD 5958574 + 5958554 5958594 41 TGTTTGTGGTAACACCACGACCACCTCTGGTCTGACGGTAA TGTTTGTGGTAACACCACGACCACTTCTGGTCTGACGGTAA < 41bp 1 0.1290361399391 1 0.296220630407333 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCM8 ENSG00000125885 CDS Human protein_coding chr20:5958574 chr20:5958578 synonymous SNV . 0 25 hm5C_associated_SNPs_26574 0 0 1 0 2 MCM8 chr20:5958522 3'AG 5958522 Downstream 57bp
chr20 5958578 5958578 1 + C T LUAD 5958574 + 5958554 5958594 41 TGTTTGTGGTAACACCACGACCACCTCTGGTCTGACGGTAA TGTTTGTGGTAACACCACGACCACTTCTGGTCTGACGGTAA < 41bp 1 0.1290361399391 1 0.296220630407333 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCM8 ENSG00000125885 CDS Human protein_coding chr20:5958574 chr20:5958578 synonymous SNV . 0 25 hm5C_associated_SNPs_26574 0 0 1 0 2 MCM8 chr20:5958663 5'GT 5958663 Upstream 86bp
chr4 1343559 1343559 1 + G T LUAD 1343544 + 1343524 1343564 41 AGGCGGCACAGAGGCTGAGGCAGGCGACCACCCGGGCCGTG AGGCGGCACAGAGGCTGAGGCAGGCGACCACCCGGTCCGTG < 41bp 1 0.755317897560461 1 0.898116230964661 experiment 0.489364204879077 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UVSSA ENSG00000163945 CDS Human protein_coding chr4:1343544 chr4:1343559 nonsynonymous SNV 0.004 1 36 hm5C_associated_SNPs_26575 0 0 0 0 1 UVSSA chr4:1343642 5'GT 1343642 Upstream 84bp
chr7 55259441 55259441 1 + G T LUAD 55259432 + 55259412 55259452 41 GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGA GGCATGAACTACTTGGAGGACCGTCGCTTTGTGCACCGCGA < 41bp 1 0.0695586641786592 1 0.189282596111298 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55259432 chr7:55259441 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_26576 0 0 1 0 1 EGFR chr7:55259412 3'AG 55259412 Downstream 30bp
chr16 22237269 22237269 1 + G T LUAD 22237252 + 22237232 22237272 41 GCAACCTAACAAAAAGTGAGCGGTATAGCTCCAGCGGGTCC GCAACCTAACAAAAAGTGAGCGGTATAGCTCCAGCGGTTCC < 41bp 1 0.382923369297669 1 0.547179043292999 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EEF2K ENSG00000103319 CDS Human protein_coding chr16:22237252 chr16:22237269 synonymous SNV . 0 38 hm5C_associated_SNPs_26577 0 0 1 0 1 EEF2K chr16:22237296 5'GT 22237296 Upstream 28bp
chr14 61346468 61346468 1 + G C LUAD 61346465 + 61346445 61346485 41 CACTGGCACCTATTCACAAGCTTGAAGAAGCTCTGTATGAA CACTGGCACCTATTCACAAGCTTCAAGAAGCTCTGTATGAA < 41bp 1 0.481213785125799 1 0.56866842508316 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61346465 chr14:61346468 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_26579 0 0 1 0 1 MNAT1 chr14:61346553 5'GT 61346553 Upstream 86bp
chr12 6969609 6969609 1 + A T LUAD 6969628 + 6969608 6969648 41 CAGCAGGATGCCCAGGAGTTCTTCCTTCACCTTATCAACAT CTGCAGGATGCCCAGGAGTTCTTCCTTCACCTTATCAACAT < 41bp 1 0.245665953328216 1 0.0575905442237854 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control USP5 ENSG00000111667 CDS Human protein_coding chr12:6969628 chr12:6969609 nonsynonymous SNV 1.000 5 2 hm5C_associated_SNPs_26580 0 0 1 0 2 USP5 chr12:6969530 3'AG 6969530 Downstream 80bp
chr12 6969609 6969609 1 + A T LUAD 6969628 + 6969608 6969648 41 CAGCAGGATGCCCAGGAGTTCTTCCTTCACCTTATCAACAT CTGCAGGATGCCCAGGAGTTCTTCCTTCACCTTATCAACAT < 41bp 1 0.245665953328216 1 0.0575905442237854 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control USP5 ENSG00000111667 CDS Human protein_coding chr12:6969628 chr12:6969609 nonsynonymous SNV 1.000 5 2 hm5C_associated_SNPs_26580 0 0 1 0 2 USP5 chr12:6969655 5'GT 6969655 Upstream 47bp
chr8 99019735 99019735 1 + T A LUAD 99019717 + 99019697 99019737 41 GGTTTTGCAGGGGTGGATTACTGCCTGCTGAGTGACCATGG GGTTTTGCAGGGGTGGATTACTGCCTGCTGAGTGACCAAGG < 41bp 1 0.543612279902066 1 0.241162359714508 experiment 0.912775440195868 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MATN2 ENSG00000132561 CDS Human protein_coding chr8:99019717 chr8:99019735 nonsynonymous SNV 0.839 4 39 hm5C_associated_SNPs_26582 0 0 0 0 2 MATN2 chr8:99019707 3'AG 99019707 Downstream 29bp
chr8 99019735 99019735 1 + T A LUAD 99019717 + 99019697 99019737 41 GGTTTTGCAGGGGTGGATTACTGCCTGCTGAGTGACCATGG GGTTTTGCAGGGGTGGATTACTGCCTGCTGAGTGACCAAGG < 41bp 1 0.543612279902066 1 0.241162359714508 experiment 0.912775440195868 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MATN2 ENSG00000132561 CDS Human protein_coding chr8:99019717 chr8:99019735 nonsynonymous SNV 0.839 4 39 hm5C_associated_SNPs_26582 0 0 0 0 2 MATN2 chr8:99019829 5'GT 99019829 Upstream 95bp
chr1 104115874 104115874 1 + G T LUAD 104115875 + 104115855 104115895 41 TATCGAGAACTACAATGATGCTACTCAGGTAAATTTTTTTA TATCGAGAACTACAATGATTCTACTCAGGTAAATTTTTTTA < 41bp 1 0.305937660892667 1 0.167553454637527 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AMY2B ENSG00000240038 CDS Human protein_coding chr1:104115875 chr1:104115874 nonsynonymous SNV 0.313 2 20 hm5C_associated_SNPs_26583 0 0 0 0 1 AMY2B chr1:104115882 5'GT 104115882 Upstream 9bp
chr13 31903674 31903674 1 + C T LUAD 31903694 + 31903674 31903714 41 CATCAAGTTCCCATATCGTTCCACAAACACTGGAACATCGA TATCAAGTTCCCATATCGTTCCACAAACACTGGAACATCGA < 41bp 1 0.389824200124032 1 0.143104761838913 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31903694 chr13:31903674 nonsynonymous SNV 0.989 3 1 hm5C_associated_SNPs_26584 0 0 1 0 1 B3GLCT chr13:31903638 3'AG 31903638 Downstream 37bp
chr2 197541345 197541345 1 + G C LUAD 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTCTGCAAAAAGAGCTGCTAGAATCAACTATTGCA < 41bp 1 0.236060001583348 1 0.0744020342826843 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541345 nonsynonymous SNV 0.009 0 9 hm5C_associated_SNPs_26586 0 0 1 8 1 CCDC150 chr2:197541278 3'AG 197541278 Downstream 68bp
chr12 58109729 58109729 1 + A G LUAD 58109718 + 58109698 58109738 41 CTGTCACCCTTCCCTACAGCCTGAGGAGTACATGGCCTACG CTGTCACCCTTCCCTACAGCCTGAGGAGTACGTGGCCTACG < 41bp 1 0.71646989165987 1 0.343274474143982 experiment 0.567060216680259 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OS9 ENSG00000135506 CDS Human protein_coding chr12:58109718 chr12:58109729 nonsynonymous SNV 0.976 0 32 hm5C_associated_SNPs_26606 0 0 1 0 1 OS9 chr12:58109753 5'GT 58109753 Upstream 25bp
chr7 4824630 4824630 1 + G A LUAD 4824610 + 4824590 4824630 41 CCTCTGCCGGCCGCCTGCTGCCGCCCCGGGAGCGGCTTCGG CCTCTGCCGGCCGCCTGCTGCCGCCCCGGGAGCGGCTTCGA < 41bp 1 0.170089603306863 1 0.189379930496216 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824610 chr7:4824630 synonymous SNV . 0 41 hm5C_associated_SNPs_26607 0 0 1 0 2 AP5Z1 chr7:4824539 3'AG 4824539 Downstream 92bp
chr7 4824630 4824630 1 + G A LUAD 4824610 + 4824590 4824630 41 CCTCTGCCGGCCGCCTGCTGCCGCCCCGGGAGCGGCTTCGG CCTCTGCCGGCCGCCTGCTGCCGCCCCGGGAGCGGCTTCGA < 41bp 1 0.170089603306863 1 0.189379930496216 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824610 chr7:4824630 synonymous SNV . 0 41 hm5C_associated_SNPs_26607 0 0 1 0 2 AP5Z1 chr7:4824679 5'GT 4824679 Upstream 50bp
chr7 98589832 98589832 1 + C A LUAD 98589838 + 98589818 98589858 41 TGAAAATAGAACAGCGGGAACGCTACAAGAGCGGTACGTCT TGAAAATAGAACAGAGGGAACGCTACAAGAGCGGTACGTCT < 41bp 1 0.183720665828466 1 0.34137624502182 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98589838 chr7:98589832 synonymous SNV . 0 15 hm5C_associated_SNPs_26608 0 0 0 0 2 TRRAP chr7:98589760 3'AG 98589760 Downstream 73bp
chr7 98589832 98589832 1 + C A LUAD 98589838 + 98589818 98589858 41 TGAAAATAGAACAGCGGGAACGCTACAAGAGCGGTACGTCT TGAAAATAGAACAGAGGGAACGCTACAAGAGCGGTACGTCT < 41bp 1 0.183720665828466 1 0.34137624502182 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98589838 chr7:98589832 synonymous SNV . 0 15 hm5C_associated_SNPs_26608 0 0 0 0 2 TRRAP chr7:98589850 5'GT 98589850 Upstream 19bp
chr10 1170222 1170222 1 + G T LUAD 1170216 + 1170196 1170236 41 TGGTTTCAGGCAGCGATGACCGCACGGTGAAAGTCTGGGAC TGGTTTCAGGCAGCGATGACCGCACGTTGAAAGTCTGGGAC < 41bp 1 0.425739825421344 1 0.435390830039978 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR37 ENSG00000047056 CDS Human protein_coding chr10:1170216 chr10:1170222 nonsynonymous SNV 0.998 4 27 hm5C_associated_SNPs_26609 0 0 1 0 2 WDR37 chr10:1170158 3'AG 1170158 Downstream 65bp
chr10 1170222 1170222 1 + G T LUAD 1170216 + 1170196 1170236 41 TGGTTTCAGGCAGCGATGACCGCACGGTGAAAGTCTGGGAC TGGTTTCAGGCAGCGATGACCGCACGTTGAAAGTCTGGGAC < 41bp 1 0.425739825421344 1 0.435390830039978 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR37 ENSG00000047056 CDS Human protein_coding chr10:1170216 chr10:1170222 nonsynonymous SNV 0.998 4 27 hm5C_associated_SNPs_26609 0 0 1 0 2 WDR37 chr10:1170292 5'GT 1170292 Upstream 71bp
chr7 98589833 98589833 1 + G T LUAD 98589838 + 98589818 98589858 41 TGAAAATAGAACAGCGGGAACGCTACAAGAGCGGTACGTCT TGAAAATAGAACAGCTGGAACGCTACAAGAGCGGTACGTCT < 41bp 1 0.184628459135504 1 0.351111620664597 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98589838 chr7:98589833 nonsynonymous SNV 0.999 4 16 hm5C_associated_SNPs_26610 0 0 0 0 2 TRRAP chr7:98589760 3'AG 98589760 Downstream 74bp
chr7 98589833 98589833 1 + G T LUAD 98589838 + 98589818 98589858 41 TGAAAATAGAACAGCGGGAACGCTACAAGAGCGGTACGTCT TGAAAATAGAACAGCTGGAACGCTACAAGAGCGGTACGTCT < 41bp 1 0.184628459135504 1 0.351111620664597 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98589838 chr7:98589833 nonsynonymous SNV 0.999 4 16 hm5C_associated_SNPs_26610 0 0 0 0 2 TRRAP chr7:98589850 5'GT 98589850 Upstream 18bp
chr1 145539090 145539090 1 + C T LUAD 145539084 + 145539064 145539104 41 CTATCACTGTCTCAAGTCATCACTAACAATGTGAGTCTGGT CTATCACTGTCTCAAGTCATCACTAATAATGTGAGTCTGGT < 41bp 1 0.125056296823565 1 0.22474929690361 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ITGA10 ENSG00000143127 CDS Human protein_coding chr1:145539084 chr1:145539090 synonymous SNV . 0 27 hm5C_associated_SNPs_26611 0 0 0 0 1 ITGA10 chr1:145539093 5'GT 145539093 Upstream 4bp
chr6 36442578 36442578 1 + A C LUAD 36442596 + 36442576 36442616 41 TGACTATGCCTCTCAGCCAGCAAATCTTCAGTTCCCTCACA TGCCTATGCCTCTCAGCCAGCAAATCTTCAGTTCCCTCACA < 41bp 1 0.178472986578394 1 0.408287703990936 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KCTD20 ENSG00000112078 CDS Human protein_coding chr6:36442596 chr6:36442578 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_26612 0 0 1 0 1 KCTD20 chr6:36442566 3'AG 36442566 Downstream 13bp
chr12 51108375 51108375 1 + A G LUAD 51108355 + 51108335 51108375 41 ATACATGTGTGACAAACTTGCCAAAGCCCCGGCAAAAACAA ATACATGTGTGACAAACTTGCCAAAGCCCCGGCAAAAACAG < 41bp 1 0.20763434843155 1 0.211563527584076 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51108355 chr12:51108375 synonymous SNV . 0 41 hm5C_associated_SNPs_26613 0 0 0 0 1 DIP2B chr12:51108379 5'GT 51108379 Upstream 5bp
chr13 48828025 48828025 1 + G T LUAD 48828044 + 48828024 48828064 41 AGGTGTTATTCTAGGAGGAGCATACTTGTACAAATATTTTG ATGTGTTATTCTAGGAGGAGCATACTTGTACAAATATTTTG < 41bp 1 0.0884166972952473 1 0.117158114910126 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITM2B ENSG00000136156 CDS Human protein_coding chr13:48828044 chr13:48828025 nonsynonymous SNV 0.947 3 2 hm5C_associated_SNPs_26614 0 0 1 0 2 ITM2B chr13:48827944 3'AG 48827944 Downstream 82bp
chr13 48828025 48828025 1 + G T LUAD 48828044 + 48828024 48828064 41 AGGTGTTATTCTAGGAGGAGCATACTTGTACAAATATTTTG ATGTGTTATTCTAGGAGGAGCATACTTGTACAAATATTTTG < 41bp 1 0.0884166972952473 1 0.117158114910126 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITM2B ENSG00000136156 CDS Human protein_coding chr13:48828044 chr13:48828025 nonsynonymous SNV 0.947 3 2 hm5C_associated_SNPs_26614 0 0 1 0 2 ITM2B chr13:48828072 5'GT 48828072 Upstream 48bp
chr5 153783750 153783750 1 + G T LUAD 153783741 + 153783721 153783761 41 TACAGGAAGTATGTGCCCTACAAGGTCCCGGCCGGAGTCAG TACAGGAAGTATGTGCCCTACAAGGTCCCTGCCGGAGTCAG < 41bp 1 0.613211107067931 1 0.168331831693649 experiment 0.773577785864137 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153783741 chr5:153783750 synonymous SNV . 0 30 hm5C_associated_SNPs_26615 0 0 1 0 2 GALNT10 chr5:153783664 3'AG 153783664 Downstream 87bp
chr5 153783750 153783750 1 + G T LUAD 153783741 + 153783721 153783761 41 TACAGGAAGTATGTGCCCTACAAGGTCCCGGCCGGAGTCAG TACAGGAAGTATGTGCCCTACAAGGTCCCTGCCGGAGTCAG < 41bp 1 0.613211107067931 1 0.168331831693649 experiment 0.773577785864137 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153783741 chr5:153783750 synonymous SNV . 0 30 hm5C_associated_SNPs_26615 0 0 1 0 2 GALNT10 chr5:153783771 5'GT 153783771 Upstream 22bp
chr17 37070638 37070638 1 + G C LUAD 37070657 + 37070637 37070677 41 GGAGCCAGAGCGTCGGGATTCACAGGACGGCAGCAGCTACC GCAGCCAGAGCGTCGGGATTCACAGGACGGCAGCAGCTACC < 41bp 1 0.79162927616179 1 0.21314737200737 experiment 0.416741447676419 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LASP1 ENSG00000002834 CDS Human protein_coding chr17:37070657 chr17:37070638 nonsynonymous SNV 0.726 0 2 hm5C_associated_SNPs_26617 0 0 1 0 2 LASP1 chr17:37070578 3'AG 37070578 Downstream 61bp
chr17 37070638 37070638 1 + G C LUAD 37070657 + 37070637 37070677 41 GGAGCCAGAGCGTCGGGATTCACAGGACGGCAGCAGCTACC GCAGCCAGAGCGTCGGGATTCACAGGACGGCAGCAGCTACC < 41bp 1 0.79162927616179 1 0.21314737200737 experiment 0.416741447676419 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LASP1 ENSG00000002834 CDS Human protein_coding chr17:37070657 chr17:37070638 nonsynonymous SNV 0.726 0 2 hm5C_associated_SNPs_26617 0 0 1 0 2 LASP1 chr17:37070728 5'GT 37070728 Upstream 91bp
chr16 56716476 56716476 1 + G A LUAD 56716470 + 56716450 56716490 41 GAAATGGACCCCAACTGCTCCTGCTCGCCTGGTAAGGGACA GAAATGGACCCCAACTGCTCCTGCTCACCTGGTAAGGGACA < 41bp 1 0.219770260679584 1 0.181626915931702 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MT1X ENSG00000187193 CDS Human protein_coding chr16:56716470 chr16:56716476 synonymous SNV . 0 27 hm5C_associated_SNPs_26618 0 0 1 0 1 MT1X chr16:56716480 5'GT 56716480 Upstream 5bp
chr2 171818224 171818224 1 + C G LUAD 171818210 + 171818190 171818230 41 TTATTGCCACCACAAGTAAACCAGTCCCTCACTTCTGTGCC TTATTGCCACCACAAGTAAACCAGTCCCTCACTTGTGTGCC < 41bp 1 0.206423917692833 1 0.101730972528458 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171818210 chr2:171818224 nonsynonymous SNV 0.998 3 35 hm5C_associated_SNPs_26619 0 0 1 0 2 GORASP2 chr2:171818173 3'AG 171818173 Downstream 52bp
chr2 171818224 171818224 1 + C G LUAD 171818210 + 171818190 171818230 41 TTATTGCCACCACAAGTAAACCAGTCCCTCACTTCTGTGCC TTATTGCCACCACAAGTAAACCAGTCCCTCACTTGTGTGCC < 41bp 1 0.206423917692833 1 0.101730972528458 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171818210 chr2:171818224 nonsynonymous SNV 0.998 3 35 hm5C_associated_SNPs_26619 0 0 1 0 2 GORASP2 chr2:171818259 5'GT 171818259 Upstream 36bp
chr16 599442 599442 1 + G A LUAD 599450 + 599430 599470 41 ATGCTGCCCTGTGATGAGGCCGGCTGCCTCCTCTTCTCACA ATGCTGCCCTGTAATGAGGCCGGCTGCCTCCTCTTCTCACA < 41bp 1 0.258310099166434 1 0.148414731025696 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:599450 chr16:599442 nonsynonymous SNV 0.789 4 13 hm5C_associated_SNPs_26620 0 0 1 0 1 CAPN15 chr16:599471 5'GT 599471 Upstream 30bp
chr1 16785432 16785432 1 + C T LUAD 16785430 + 16785410 16785450 41 GACTTCTGGGAAGGCGCTCCCTCATCTGGGCCAAAGGAAGG GACTTCTGGGAAGGCGCTCCCTTATCTGGGCCAAAGGAAGG < 41bp 1 0.290674178231323 1 0.0513639748096466 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16785430 chr1:16785432 nonsynonymous SNV 0.083 1 23 hm5C_associated_SNPs_26621 0 0 1 0 1 NECAP2 chr1:16785337 3'AG 16785337 Downstream 96bp
chr8 17406315 17406315 1 + A G LUAD 17406301 + 17406281 17406321 41 GTTTGTGAAAGGAAATGTGGCAAACTGGAAGATTAGTGAAG GTTTGTGAAAGGAAATGTGGCAAACTGGAAGATTGGTGAAG < 41bp 1 0.209283026889157 1 0.133090198040009 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17406301 chr8:17406315 nonsynonymous SNV 0.998 3 35 hm5C_associated_SNPs_26622 0 0 1 0 1 SLC7A2 chr8:17406352 5'GT 17406352 Upstream 38bp
chr10 12123626 12123626 1 + G C LUAD 12123616 + 12123596 12123636 41 CAGACACTGCAGGGACCCTTCCACACGGCAGGTATGGCTTC CAGACACTGCAGGGACCCTTCCACACGGCACGTATGGCTTC < 41bp 1 0.55906300194802 1 0.331889390945435 experiment 0.88187399610396 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12123616 chr10:12123626 nonsynonymous SNV 0.814 4 31 hm5C_associated_SNPs_26623 0 0 0 0 1 DHTKD1 chr10:12123626 5'GT 12123626 Upstream 1bp
chr10 12123626 12123626 1 + G C LUAD 12123624 + 12123604 12123644 41 GCAGGGACCCTTCCACACGGCAGGTATGGCTTCTGCACAGC GCAGGGACCCTTCCACACGGCACGTATGGCTTCTGCACAGC < 41bp 1 0.652459422774192 1 0.0517101585865021 experiment 0.695081154451616 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12123624 chr10:12123626 nonsynonymous SNV 0.814 4 23 hm5C_associated_SNPs_26624 0 0 0 0 1 DHTKD1 chr10:12123626 5'GT 12123626 Upstream 1bp
chr2 128178938 128178938 1 + C T LUAD 128178922 + 128178902 128178942 41 GATCCGCAAACGTGCCAACTCCTTCCTGGAGGAGCTCCGTC GATCCGCAAACGTGCCAACTCCTTCCTGGAGGAGCTTCGTC < 41bp 1 0.051195368831837 1 0.0683390498161316 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128178922 chr2:128178938 nonsynonymous SNV . 0 37 hm5C_associated_SNPs_26625 0 0 1 0 3 PROC chr2:128178859 3'AG 128178859 Downstream 80bp
chr2 128178938 128178938 1 + C T LUAD 128178922 + 128178902 128178942 41 GATCCGCAAACGTGCCAACTCCTTCCTGGAGGAGCTCCGTC GATCCGCAAACGTGCCAACTCCTTCCTGGAGGAGCTTCGTC < 41bp 1 0.051195368831837 1 0.0683390498161316 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128178922 chr2:128178938 nonsynonymous SNV . 0 37 hm5C_associated_SNPs_26625 0 0 1 0 3 PROC chr2:128178894 3'AG 128178894 Downstream 45bp
chr2 128178938 128178938 1 + C T LUAD 128178922 + 128178902 128178942 41 GATCCGCAAACGTGCCAACTCCTTCCTGGAGGAGCTCCGTC GATCCGCAAACGTGCCAACTCCTTCCTGGAGGAGCTTCGTC < 41bp 1 0.051195368831837 1 0.0683390498161316 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128178922 chr2:128178938 nonsynonymous SNV . 0 37 hm5C_associated_SNPs_26625 0 0 1 0 3 PROC chr2:128179025 5'GT 128179025 Upstream 88bp
chr6 145157479 145157479 1 + C T LUAD 145157491 + 145157471 145157511 41 CAGCACCTCCGAAGGGGGCTCCCTGTCGGTTCACCGCCAGA CAGCACCTTCGAAGGGGGCTCCCTGTCGGTTCACCGCCAGA < 41bp 1 0.0610696476612614 1 0.139572560787201 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:145157491 chr6:145157479 synonymous SNV . 0 9 hm5C_associated_SNPs_26626 0 0 0 0 1 UTRN chr6:145157437 3'AG 145157437 Downstream 43bp
chr8 17406291 17406291 1 + G A LUAD 17406301 + 17406281 17406321 41 GTTTGTGAAAGGAAATGTGGCAAACTGGAAGATTAGTGAAG GTTTGTGAAAAGAAATGTGGCAAACTGGAAGATTAGTGAAG < 41bp 1 0.167606645288205 1 0.102503210306168 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17406301 chr8:17406291 nonsynonymous SNV 1.000 5 11 hm5C_associated_SNPs_26627 0 0 1 0 1 SLC7A2 chr8:17406352 5'GT 17406352 Upstream 62bp
chr3 20019888 20019888 1 + G T LUAD 20019890 + 20019870 20019910 41 TGTAAATGAAATATTCATGGCAATAGGTAAGATTAATATCT TGTAAATGAAATATTCATTGCAATAGGTAAGATTAATATCT < 41bp 1 0.230241934939371 1 0.197461932897568 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019890 chr3:20019888 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_26628 0 0 0 2 2 RAB5A chr3:20019802 3'AG 20019802 Downstream 87bp
chr3 20019888 20019888 1 + G T LUAD 20019890 + 20019870 20019910 41 TGTAAATGAAATATTCATGGCAATAGGTAAGATTAATATCT TGTAAATGAAATATTCATTGCAATAGGTAAGATTAATATCT < 41bp 1 0.230241934939371 1 0.197461932897568 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019890 chr3:20019888 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_26628 0 0 0 2 2 RAB5A chr3:20019895 5'GT 20019895 Upstream 8bp
chr10 105203041 105203041 1 + A T LUAD 105203022 + 105203002 105203042 41 AGGTCTTTGAGCGAGCCGTGCAGTACAACGAGCCTCTCAAA AGGTCTTTGAGCGAGCCGTGCAGTACAACGAGCCTCTCATA < 41bp 1 0.269485688775103 1 0.825788736343384 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105203022 chr10:105203041 nonsynonymous SNV 0.970 3 40 hm5C_associated_SNPs_26629 0 0 1 0 1 PDCD11 chr10:105203090 5'GT 105203090 Upstream 50bp
chr16 12618639 12618639 1 + C T LUAD 12618659 + 12618639 12618679 41 CCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC TCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC < 41bp 1 0.172717131588834 1 0.277452111244202 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12618659 chr16:12618639 synonymous SNV . 0 1 hm5C_associated_SNPs_26630 0 0 0 0 2 SNX29 chr16:12618559 3'AG 12618559 Downstream 81bp
chr16 12618639 12618639 1 + C T LUAD 12618659 + 12618639 12618679 41 CCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC TCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC < 41bp 1 0.172717131588834 1 0.277452111244202 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12618659 chr16:12618639 synonymous SNV . 0 1 hm5C_associated_SNPs_26630 0 0 0 0 2 SNX29 chr16:12618698 5'GT 12618698 Upstream 60bp
chr3 196533538 196533538 1 + G T LUAD 196533533 + 196533513 196533553 41 ACTGCTCCTCCCGTTATTGCCCCGCGACCGGATCATACGAA ACTGCTCCTCCCGTTATTGCCCCGCTACCGGATCATACGAA < 41bp 1 0.434258432844148 1 0.525960206985474 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAK2 ENSG00000180370 CDS Human protein_coding chr3:196533533 chr3:196533538 nonsynonymous SNV 0.986 3 26 hm5C_associated_SNPs_26631 0 0 1 0 2 PAK2 chr3:196533450 3'AG 196533450 Downstream 89bp
chr3 196533538 196533538 1 + G T LUAD 196533533 + 196533513 196533553 41 ACTGCTCCTCCCGTTATTGCCCCGCGACCGGATCATACGAA ACTGCTCCTCCCGTTATTGCCCCGCTACCGGATCATACGAA < 41bp 1 0.434258432844148 1 0.525960206985474 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAK2 ENSG00000180370 CDS Human protein_coding chr3:196533533 chr3:196533538 nonsynonymous SNV 0.986 3 26 hm5C_associated_SNPs_26631 0 0 1 0 2 PAK2 chr3:196533557 5'GT 196533557 Upstream 20bp
chr9 15444672 15444672 1 + G A LUAD 15444686 + 15444666 15444706 41 CTATCTGTGAATATCTTGTACCCTGTTATATTTCATAAGGT CTATCTATGAATATCTTGTACCCTGTTATATTTCATAAGGT < 41bp 1 0.0978050011959939 1 0.047975480556488 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15444686 chr9:15444672 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_26632 0 0 1 2 2 SNAPC3 chr9:15444600 3'AG 15444600 Downstream 73bp
chr9 15444672 15444672 1 + G A LUAD 15444686 + 15444666 15444706 41 CTATCTGTGAATATCTTGTACCCTGTTATATTTCATAAGGT CTATCTATGAATATCTTGTACCCTGTTATATTTCATAAGGT < 41bp 1 0.0978050011959939 1 0.047975480556488 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15444686 chr9:15444672 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_26632 0 0 1 2 2 SNAPC3 chr9:15444704 5'GT 15444704 Upstream 33bp
chr5 169018131 169018131 1 + G A LUAD 169018123 + 169018103 169018143 41 CGAATGTTAGAAAGTTTGAGCTGCGAATGTGAAGCTATTAA CGAATGTTAGAAAGTTTGAGCTGCGAATATGAAGCTATTAA < 41bp 1 0.416861660159583 1 0.120415240526199 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169018123 chr5:169018131 nonsynonymous SNV 0.995 1 29 hm5C_associated_SNPs_26633 0 0 1 0 2 SPDL1 chr5:169018207 5'GT 169018207 Upstream 77bp
chr5 169018131 169018131 1 + G A LUAD 169018123 + 169018103 169018143 41 CGAATGTTAGAAAGTTTGAGCTGCGAATGTGAAGCTATTAA CGAATGTTAGAAAGTTTGAGCTGCGAATATGAAGCTATTAA < 41bp 1 0.416861660159583 1 0.120415240526199 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169018123 chr5:169018131 nonsynonymous SNV 0.995 1 29 hm5C_associated_SNPs_26633 0 0 1 0 2 SPDL1 chr5:169018228 5'GT 169018228 Upstream 98bp
chr5 137754725 137754725 1 + A G LUAD 137754741 + 137754721 137754761 41 CTCCAGAGCCGGACCATGTTCCCAAAGCCGACAGCACTGAC CTCCGGAGCCGGACCATGTTCCCAAAGCCGACAGCACTGAC < 41bp 1 0.485765381045597 1 0.18029910326004 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KDM3B ENSG00000120733 CDS Human protein_coding chr5:137754741 chr5:137754725 synonymous SNV . 0 5 hm5C_associated_SNPs_26635 0 0 1 0 1 KDM3B chr5:137754642 3'AG 137754642 Downstream 84bp
chr1 12317054 12317054 1 + G A LUAD 12317053 + 12317033 12317073 41 CTAATACAAAGCTGCAATACCGGCAAATCATGGAATTCCTC CTAATACAAAGCTGCAATACCAGCAAATCATGGAATTCCTC < 41bp 1 0.215357275037349 1 0.376029759645462 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VPS13D ENSG00000048707 CDS Human protein_coding chr1:12317053 chr1:12317054 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_26638 0 0 1 0 2 VPS13D chr1:12317044 3'AG 12317044 Downstream 11bp
chr1 12317054 12317054 1 + G A LUAD 12317053 + 12317033 12317073 41 CTAATACAAAGCTGCAATACCGGCAAATCATGGAATTCCTC CTAATACAAAGCTGCAATACCAGCAAATCATGGAATTCCTC < 41bp 1 0.215357275037349 1 0.376029759645462 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VPS13D ENSG00000048707 CDS Human protein_coding chr1:12317053 chr1:12317054 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_26638 0 0 1 0 2 VPS13D chr1:12317144 5'GT 12317144 Upstream 91bp
chr11 25004823 25004823 1 + C T LUAD 25004826 + 25004806 25004846 41 CTCTAAGCTTCCAGATGCAGCGGCCAAAAGCAAGGTACCTA CTCTAAGCTTCCAGATGTAGCGGCCAAAAGCAAGGTACCTA < 41bp 1 0.405859868352153 1 0.320751368999481 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LUZP2 ENSG00000187398 CDS Human protein_coding chr11:25004826 chr11:25004823 nonsynonymous SNV 0.002 0 18 hm5C_associated_SNPs_26639 0 0 0 0 1 LUZP2 chr11:25004839 5'GT 25004839 Upstream 17bp
chr7 100275138 100275138 1 + G A LUAD 100275144 + 100275124 100275164 41 CACGCCATCCCGCTGCGCTCCTCCTGGGTAATGACCTGTGC CACGCCATCCCGCTACGCTCCTCCTGGGTAATGACCTGTGC < 41bp 1 0.6012237472603 1 0.41372150182724 experiment 0.7975525054794 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GNB2 ENSG00000172354 CDS Human protein_coding chr7:100275144 chr7:100275138 synonymous SNV . 0 15 hm5C_associated_SNPs_26640 0 0 1 0 1 GNB2 chr7:100275121 3'AG 100275121 Downstream 18bp
chr5 14498735 14498735 1 + G T LUAD 14498746 + 14498726 14498766 41 CGTCGGCCAGCCTGAGGGTCCTAGGTAAGCACCGTGCAACG CGTCGGCCATCCTGAGGGTCCTAGGTAAGCACCGTGCAACG < 41bp 1 0.395673927008759 1 0.233690232038498 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14498746 chr5:14498735 nonsynonymous SNV 0.933 3 10 hm5C_associated_SNPs_26641 0 0 1 0 1 TRIO chr5:14498749 5'GT 14498749 Upstream 15bp
chr1 109773541 109773541 1 + A T LUAD 109773540 + 109773520 109773560 41 GAGGATTTGGGGTGATTGTACAGTCAGGAAGAAGTACTCTC GAGGATTTGGGGTGATTGTACTGTCAGGAAGAAGTACTCTC < 41bp 1 0.280871524803707 1 0.0609756708145142 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SARS ENSG00000031698 CDS Human protein_coding chr1:109773540 chr1:109773541 synonymous SNV . 0 22 hm5C_associated_SNPs_26642 0 0 1 0 1 SARS chr1:109773500 3'AG 109773500 Downstream 42bp
chr20 62373320 62373320 1 + G A LUAD 62373328 + 62373308 62373348 41 GACCTGGCCAGTGACCAGTCCTCTCCGTCCACCCCGTCACC GACCTGGCCAGTAACCAGTCCTCTCCGTCCACCCCGTCACC < 41bp 1 0.0602799140276986 1 0.0295876860618591 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62373328 chr20:62373320 nonsynonymous SNV 0.970 1 13 hm5C_associated_SNPs_26644 0 0 1 0 2 SLC2A4RG chr20:62373222 3'AG 62373222 Downstream 99bp
chr20 62373320 62373320 1 + G A LUAD 62373328 + 62373308 62373348 41 GACCTGGCCAGTGACCAGTCCTCTCCGTCCACCCCGTCACC GACCTGGCCAGTAACCAGTCCTCTCCGTCCACCCCGTCACC < 41bp 1 0.0602799140276986 1 0.0295876860618591 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62373328 chr20:62373320 nonsynonymous SNV 0.970 1 13 hm5C_associated_SNPs_26644 0 0 1 0 2 SLC2A4RG chr20:62373409 5'GT 62373409 Upstream 90bp
chr17 4621224 4621224 1 + C T LUAD 4621233 + 4621213 4621253 41 GCAGTTCGCCCCGGAGAAACCCGGCCCCCAGCCTTCAGCCG GCAGTTCGCCCTGGAGAAACCCGGCCCCCAGCCTTCAGCCG < 41bp 1 0.518114089189132 1 0.418772280216217 experiment 0.963771821621736 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4621233 chr17:4621224 nonsynonymous SNV 0.589 4 12 hm5C_associated_SNPs_26645 0 0 0 0 2 ARRB2 chr17:4621183 3'AG 4621183 Downstream 42bp
chr17 4621224 4621224 1 + C T LUAD 4621233 + 4621213 4621253 41 GCAGTTCGCCCCGGAGAAACCCGGCCCCCAGCCTTCAGCCG GCAGTTCGCCCTGGAGAAACCCGGCCCCCAGCCTTCAGCCG < 41bp 1 0.518114089189132 1 0.418772280216217 experiment 0.963771821621736 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4621233 chr17:4621224 nonsynonymous SNV 0.589 4 12 hm5C_associated_SNPs_26645 0 0 0 0 2 ARRB2 chr17:4621318 5'GT 4621318 Upstream 95bp
chr2 46611667 46611667 1 + C T LUAD 46611654 + 46611634 46611674 41 AACCCTTCTTTCAGGCATGGCAAGCCGGCTGCTCGGGCCCT AACCCTTCTTTCAGGCATGGCAAGCCGGCTGCTTGGGCCCT < 41bp 1 0.185057077002805 1 0.375244349241257 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46611654 chr2:46611667 synonymous SNV . 0 34 hm5C_associated_SNPs_26650 0 0 1 0 1 EPAS1 chr2:46611648 3'AG 46611648 Downstream 20bp
chr19 49404089 49404089 1 + G C LUAD 49404083 + 49404063 49404103 41 TCTGGGCCCCGAGGAACCCTCCTTCTGTTGCCGCTGCTGCT TCTGGGCCCCGAGGAACCCTCCTTCTCTTGCCGCTGCTGCT < 41bp 1 0.0244724802257403 1 0.103273451328278 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49404083 chr19:49404089 synonymous SNV . 0 27 hm5C_associated_SNPs_26651 0 0 1 0 2 NUCB1 chr19:49404043 3'AG 49404043 Downstream 47bp
chr19 49404089 49404089 1 + G C LUAD 49404083 + 49404063 49404103 41 TCTGGGCCCCGAGGAACCCTCCTTCTGTTGCCGCTGCTGCT TCTGGGCCCCGAGGAACCCTCCTTCTCTTGCCGCTGCTGCT < 41bp 1 0.0244724802257403 1 0.103273451328278 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49404083 chr19:49404089 synonymous SNV . 0 27 hm5C_associated_SNPs_26651 0 0 1 0 2 NUCB1 chr19:49404188 5'GT 49404188 Upstream 100bp
chr12 58109591 58109591 1 + G T LUAD 58109596 + 58109576 58109616 41 GACTACATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTA GACTACATCGATCGCTTGGACGAGCCCTTGTCCTGCTCTTA < 41bp 1 0.447834067871439 1 0.666000425815582 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OS9 ENSG00000135506 CDS Human protein_coding chr12:58109596 chr12:58109591 nonsynonymous SNV 0.577 3 16 hm5C_associated_SNPs_26652 0 0 1 0 1 OS9 chr12:58109543 3'AG 58109543 Downstream 49bp
chr12 58109591 58109591 1 + G T LUAD 58109602 + 58109582 58109622 41 ATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTATGTGCT ATCGATCGCTTGGACGAGCCCTTGTCCTGCTCTTATGTGCT < 41bp 1 0.376814376599115 1 0.0581540167331696 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient OS9 ENSG00000135506 CDS Human protein_coding chr12:58109602 chr12:58109591 nonsynonymous SNV 0.577 3 10 hm5C_associated_SNPs_26653 0 0 1 0 1 OS9 chr12:58109543 3'AG 58109543 Downstream 49bp
chr1 62241001 62241001 1 + G T LUAD 62240987 + 62240967 62241007 41 GGTTGTGAGGACTATAGTTCCTGGAGGATTAGCAGATCGAG GGTTGTGAGGACTATAGTTCCTGGAGGATTAGCATATCGAG < 41bp 1 0.773114887868509 1 0.63029021024704 experiment 0.453770224262982 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PATJ ENSG00000132849 CDS Human protein_coding chr1:62240987 chr1:62241001 nonsynonymous SNV 0.998 4 35 hm5C_associated_SNPs_26655 0 0 1 0 1 PATJ chr1:62241006 5'GT 62241006 Upstream 6bp
chr1 62241001 62241001 1 + G T LUAD 62241004 + 62240984 62241024 41 TTCCTGGAGGATTAGCAGATCGAGTAAGTCAACCTTCCTTG TTCCTGGAGGATTAGCATATCGAGTAAGTCAACCTTCCTTG < 41bp 1 0.468216310195008 1 0.331790894269943 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PATJ ENSG00000132849 CDS Human protein_coding chr1:62241004 chr1:62241001 nonsynonymous SNV 0.998 4 18 hm5C_associated_SNPs_26656 0 0 1 0 1 PATJ chr1:62241006 5'GT 62241006 Upstream 6bp
chr11 8706410 8706410 1 + G T LUAD 8706393 + 8706373 8706413 41 ACAGACACGGGTGAATGCTGCTAAAAACAAGACTGGGGCTG ACAGACACGGGTGAATGCTGCTAAAAACAAGACTGGGTCTG < 41bp 1 0.63028920329709 1 0.752108812332153 experiment 0.739421593405819 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL27A ENSG00000166441 CDS Human protein_coding chr11:8706393 chr11:8706410 nonsynonymous SNV 0.755 0 38 hm5C_associated_SNPs_26657 0 0 1 0 1 RPL27A chr11:8706439 5'GT 8706439 Upstream 30bp
chr13 113907476 113907476 1 + G T LUAD 113907465 + 113907445 113907485 41 GTGGTCGAAAACTTCAGTGGCAAACTACTTTGGGACATGCT GTGGTCGAAAACTTCAGTGGCAAACTACTTTTGGACATGCT < 41bp 1 0.0679949702704002 1 0.087164431810379 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUL4A ENSG00000139842 CDS Human protein_coding chr13:113907465 chr13:113907476 nonsynonymous SNV 0.373 2 32 hm5C_associated_SNPs_26658 0 0 1 0 2 CUL4A chr13:113907396 3'AG 113907396 Downstream 81bp
chr13 113907476 113907476 1 + G T LUAD 113907465 + 113907445 113907485 41 GTGGTCGAAAACTTCAGTGGCAAACTACTTTGGGACATGCT GTGGTCGAAAACTTCAGTGGCAAACTACTTTTGGACATGCT < 41bp 1 0.0679949702704002 1 0.087164431810379 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUL4A ENSG00000139842 CDS Human protein_coding chr13:113907465 chr13:113907476 nonsynonymous SNV 0.373 2 32 hm5C_associated_SNPs_26658 0 0 1 0 2 CUL4A chr13:113907509 5'GT 113907509 Upstream 34bp
chr22 41742176 41742176 1 + G T LUAD 41742194 + 41742174 41742214 41 CTGAAGGAGCACCAGGGCATCTTCACCTTCCTCTGCGAGGT CTTAAGGAGCACCAGGGCATCTTCACCTTCCTCTGCGAGGT < 41bp 1 0.381822328156786 1 0.148411124944687 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41742194 chr22:41742176 synonymous SNV . 0 3 hm5C_associated_SNPs_26659 0 0 1 0 1 ZC3H7B chr22:41742212 5'GT 41742212 Upstream 37bp
chrX 2632486 2632486 1 + G T LUAD 2632489 + 2632469 2632509 41 GTTTCGATTTATCCGATGCCCTTCCTGGTGAGTATCAACAT GTTTCGATTTATCCGATTCCCTTCCTGGTGAGTATCAACAT < 41bp 1 0.129721307213927 1 0.0568150877952576 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD99 ENSG00000002586 CDS Human protein_coding chrX:2632489 chrX:2632486 nonsynonymous SNV 0.108 3 18 hm5C_associated_SNPs_26661 0 0 1 0 2 CD99 chrX:2632463 3'AG 2632463 Downstream 24bp
chrX 2632486 2632486 1 + G T LUAD 2632489 + 2632469 2632509 41 GTTTCGATTTATCCGATGCCCTTCCTGGTGAGTATCAACAT GTTTCGATTTATCCGATTCCCTTCCTGGTGAGTATCAACAT < 41bp 1 0.129721307213927 1 0.0568150877952576 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD99 ENSG00000002586 CDS Human protein_coding chrX:2632489 chrX:2632486 nonsynonymous SNV 0.108 3 18 hm5C_associated_SNPs_26661 0 0 1 0 2 CD99 chrX:2632495 5'GT 2632495 Upstream 10bp
chrX 70360513 70360513 1 + C A LUAD 70360532 + 70360512 70360552 41 ACCCATGATAAGTACCATGACTCCAATGAGTGCCCAGGGCG AACCATGATAAGTACCATGACTCCAATGAGTGCCCAGGGCG < 41bp 1 0.719888729149594 1 0.918369293212891 experiment 0.560222541700812 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout MED12 ENSG00000184634 CDS Human protein_coding chrX:70360532 chrX:70360513 nonsynonymous SNV 1.000 0 2 hm5C_associated_SNPs_26662 0 0 0 0 1 MED12 chrX:70360485 3'AG 70360485 Downstream 29bp
chr20 61291841 61291841 1 + T C LUAD 61291833 + 61291813 61291853 41 GGCTTCCTGGGCTCTGGGGCCGCTGCTTTCTTCACCGCCGT GGCTTCCTGGGCTCTGGGGCCGCTGCTTCCTTCACCGCCGT < 41bp 1 0.445823850351167 1 0.266342401504517 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61291833 chr20:61291841 nonsynonymous SNV 0.006 1 29 hm5C_associated_SNPs_26663 0 0 0 0 2 SLCO4A1 chr20:61291764 3'AG 61291764 Downstream 78bp
chr20 61291841 61291841 1 + T C LUAD 61291833 + 61291813 61291853 41 GGCTTCCTGGGCTCTGGGGCCGCTGCTTTCTTCACCGCCGT GGCTTCCTGGGCTCTGGGGCCGCTGCTTCCTTCACCGCCGT < 41bp 1 0.445823850351167 1 0.266342401504517 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61291833 chr20:61291841 nonsynonymous SNV 0.006 1 29 hm5C_associated_SNPs_26663 0 0 0 0 2 SLCO4A1 chr20:61291885 5'GT 61291885 Upstream 45bp
chr16 5127932 5127932 1 + C T LUAD 5127916 + 5127896 5127936 41 ATTTCATTGCAGGGCTGTGACCGTCTACGACAAGCCCGCAT ATTTCATTGCAGGGCTGTGACCGTCTACGACAAGCCTGCAT < 41bp 1 0.148779700481095 1 0.210621058940887 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5127916 chr16:5127932 synonymous SNV . 0 37 hm5C_associated_SNPs_26664 0 0 1 0 2 ALG1 chr16:5127908 3'AG 5127908 Downstream 25bp
chr16 5127932 5127932 1 + C T LUAD 5127916 + 5127896 5127936 41 ATTTCATTGCAGGGCTGTGACCGTCTACGACAAGCCCGCAT ATTTCATTGCAGGGCTGTGACCGTCTACGACAAGCCTGCAT < 41bp 1 0.148779700481095 1 0.210621058940887 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5127916 chr16:5127932 synonymous SNV . 0 37 hm5C_associated_SNPs_26664 0 0 1 0 2 ALG1 chr16:5128018 5'GT 5128018 Upstream 87bp
chr6 107100092 107100092 1 + G T LUAD 107100110 + 107100090 107100130 41 AGGATCAGATACAGGAGGATCGACCAGAAATCCTGCTGCCC AGTATCAGATACAGGAGGATCGACCAGAAATCCTGCTGCCC < 41bp 1 0.408882019524897 1 0.250573366880417 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control QRSL1 ENSG00000130348 CDS Human protein_coding chr6:107100110 chr6:107100092 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_26667 0 0 1 0 1 QRSL1 chr6:107100084 3'AG 107100084 Downstream 9bp
chr6 107100091 107100091 1 + G T LUAD 107100110 + 107100090 107100130 41 AGGATCAGATACAGGAGGATCGACCAGAAATCCTGCTGCCC ATGATCAGATACAGGAGGATCGACCAGAAATCCTGCTGCCC < 41bp 1 0.352730446264478 1 0.188787966966629 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control QRSL1 ENSG00000130348 CDS Human protein_coding chr6:107100110 chr6:107100091 stopgain 1.000 1 2 hm5C_associated_SNPs_26669 0 0 1 0 1 QRSL1 chr6:107100084 3'AG 107100084 Downstream 8bp
chr2 169551539 169551539 1 + A G LUAD 169551536 + 169551516 169551556 41 TTATTGGTCTTTGATGTTTTCTCAGTTCACTGATATCAAAA TTATTGGTCTTTGATGTTTTCTCGGTTCACTGATATCAAAA < 41bp 1 0.720684236961042 1 0.725809872150421 experiment 0.558631526077916 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169551536 chr2:169551539 nonsynonymous SNV 0.993 5 24 hm5C_associated_SNPs_26671 0 0 1 0 2 CERS6 chr2:169551469 3'AG 169551469 Downstream 71bp
chr2 169551539 169551539 1 + A G LUAD 169551536 + 169551516 169551556 41 TTATTGGTCTTTGATGTTTTCTCAGTTCACTGATATCAAAA TTATTGGTCTTTGATGTTTTCTCGGTTCACTGATATCAAAA < 41bp 1 0.720684236961042 1 0.725809872150421 experiment 0.558631526077916 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169551536 chr2:169551539 nonsynonymous SNV 0.993 5 24 hm5C_associated_SNPs_26671 0 0 1 0 2 CERS6 chr2:169551561 5'GT 169551561 Upstream 23bp
chr12 57599438 57599438 1 + G A LUAD 57599419 + 57599399 57599439 41 CGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGACGC CGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGACAC < 41bp 1 0.25379408871358 1 0.345259964466095 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599419 chr12:57599438 synonymous SNV . 0 40 hm5C_associated_SNPs_26672 0 0 0 0 2 LRP1 chr12:57599341 3'AG 57599341 Downstream 98bp
chr12 57599438 57599438 1 + G A LUAD 57599419 + 57599399 57599439 41 CGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGACGC CGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGACAC < 41bp 1 0.25379408871358 1 0.345259964466095 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599419 chr12:57599438 synonymous SNV . 0 40 hm5C_associated_SNPs_26672 0 0 0 0 2 LRP1 chr12:57599460 5'GT 57599460 Upstream 23bp
chr18 633357 633357 1 + G T LUAD 633344 + 633324 633364 41 AAGATGTTACCTGGGCAGGACAGAGGACTGTGTGGGGAACT AAGATGTTACCTGGGCAGGACAGAGGACTGTGTTGGGAACT < 41bp 1 0.488651585598674 1 0.454484105110168 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CLUL1 ENSG00000079101 CDS Human protein_coding chr18:633344 chr18:633357 nonsynonymous SNV 0.736 3 34 hm5C_associated_SNPs_26674 0 0 0 0 2 CLUL1 chr18:633298 3'AG 633298 Downstream 60bp
chr18 633357 633357 1 + G T LUAD 633344 + 633324 633364 41 AAGATGTTACCTGGGCAGGACAGAGGACTGTGTGGGGAACT AAGATGTTACCTGGGCAGGACAGAGGACTGTGTTGGGAACT < 41bp 1 0.488651585598674 1 0.454484105110168 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CLUL1 ENSG00000079101 CDS Human protein_coding chr18:633344 chr18:633357 nonsynonymous SNV 0.736 3 34 hm5C_associated_SNPs_26674 0 0 0 0 2 CLUL1 chr18:633435 5'GT 633435 Upstream 79bp
chr11 67815252 67815252 1 + G A LUAD 67815244 + 67815224 67815264 41 CCCCTCGGGCTGGAGTGTGGCCGCCATGGCCAACCAGTCTG CCCCTCGGGCTGGAGTGTGGCCGCCATGACCAACCAGTCTG < 41bp 1 0.285747204973697 1 0.0384877622127533 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815244 chr11:67815252 nonsynonymous SNV 0.997 1 29 hm5C_associated_SNPs_26675 0 0 0 0 1 TCIRG1 chr11:67815271 5'GT 67815271 Upstream 20bp
chr6 147635025 147635025 1 + C A LUAD 147635039 + 147635019 147635059 41 GATATCCTATATTTGAAAATCCCTACCCTTTGAGTATACAT GATATCATATATTTGAAAATCCCTACCCTTTGAGTATACAT < 41bp 1 0.0999771231181426 1 0.18326935172081 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP5 ENSG00000164506 CDS Human protein_coding chr6:147635039 chr6:147635025 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_26676 0 0 1 0 1 STXBP5 chr6:147635020 3'AG 147635020 Downstream 6bp
chr11 113078037 113078037 1 + G T LUAD 113078025 + 113078005 113078045 41 GCAGAATATTGTGAATGCCACCGCCAACCTCGGCCAGTCCG GCAGAATATTGTGAATGCCACCGCCAACCTCGTCCAGTCCG < 41bp 1 0.123670318409153 1 0.133310496807098 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113078025 chr11:113078037 nonsynonymous SNV 0.964 0 33 hm5C_associated_SNPs_26679 0 0 0 0 2 NCAM1 chr11:113077983 3'AG 113077983 Downstream 55bp
chr11 113078037 113078037 1 + G T LUAD 113078025 + 113078005 113078045 41 GCAGAATATTGTGAATGCCACCGCCAACCTCGGCCAGTCCG GCAGAATATTGTGAATGCCACCGCCAACCTCGTCCAGTCCG < 41bp 1 0.123670318409153 1 0.133310496807098 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113078025 chr11:113078037 nonsynonymous SNV 0.964 0 33 hm5C_associated_SNPs_26679 0 0 0 0 2 NCAM1 chr11:113078100 5'GT 113078100 Upstream 64bp
chr3 180693108 180693108 1 + T C LUAD 180693102 + 180693082 180693122 41 TTTTTCTCATCTTTAACAGTCACAGTTGCAGATTATATTTC TTTTTCTCATCTTTAACAGTCACAGTCGCAGATTATATTTC < 41bp 1 0.2039455275269 1 0.223197817802429 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FXR1 ENSG00000114416 CDS Human protein_coding chr3:180693102 chr3:180693108 synonymous SNV . 0 27 hm5C_associated_SNPs_26680 0 0 1 0 2 FXR1 chr3:180693101 3'AG 180693101 Downstream 8bp
chr3 180693108 180693108 1 + T C LUAD 180693102 + 180693082 180693122 41 TTTTTCTCATCTTTAACAGTCACAGTTGCAGATTATATTTC TTTTTCTCATCTTTAACAGTCACAGTCGCAGATTATATTTC < 41bp 1 0.2039455275269 1 0.223197817802429 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FXR1 ENSG00000114416 CDS Human protein_coding chr3:180693102 chr3:180693108 synonymous SNV . 0 27 hm5C_associated_SNPs_26680 0 0 1 0 2 FXR1 chr3:180693192 5'GT 180693192 Upstream 85bp
chr7 129394889 129394889 1 + G C LUAD 129394901 + 129394881 129394921 41 ATGTACCAGACTGTGGTGACCAGCCTCGCCCAGGGCAACGG ATGTACCACACTGTGGTGACCAGCCTCGCCCAGGGCAACGG < 41bp 1 0.55496327719372 1 0.161623865365982 experiment 0.890073445612561 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NRF1 ENSG00000106459 CDS Human protein_coding chr7:129394901 chr7:129394889 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_26682 0 0 1 0 1 NRF1 chr7:129394858 3'AG 129394858 Downstream 32bp
chr20 39795149 39795149 1 + T C LUAD 39795148 + 39795128 39795168 41 GAGCCTGACCAGAGCACAGGCTGAGCACATGCTAATGCGCG GAGCCTGACCAGAGCACAGGCCGAGCACATGCTAATGCGCG < 41bp 1 0.162369804429871 1 0.298301219940186 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39795148 chr20:39795149 synonymous SNV . 0 22 hm5C_associated_SNPs_26683 0 0 0 0 2 PLCG1 chr20:39795116 3'AG 39795116 Downstream 34bp
chr20 39795149 39795149 1 + T C LUAD 39795148 + 39795128 39795168 41 GAGCCTGACCAGAGCACAGGCTGAGCACATGCTAATGCGCG GAGCCTGACCAGAGCACAGGCCGAGCACATGCTAATGCGCG < 41bp 1 0.162369804429871 1 0.298301219940186 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39795148 chr20:39795149 synonymous SNV . 0 22 hm5C_associated_SNPs_26683 0 0 0 0 2 PLCG1 chr20:39795235 5'GT 39795235 Upstream 87bp
chr5 131607089 131607089 1 + C A LUAD 131607104 + 131607084 131607124 41 GAGCCCGTGGCCGCGGAGCCCAAGCAGTCAGGCTCCTTCCG GAGCCAGTGGCCGCGGAGCCCAAGCAGTCAGGCTCCTTCCG < 41bp 1 0.669232795116367 1 0.308423817157745 experiment 0.661534409767267 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131607104 chr5:131607089 synonymous SNV . 0 6 hm5C_associated_SNPs_26684 0 0 1 0 2 PDLIM4 chr5:131606996 3'AG 131606996 Downstream 94bp
chr5 131607089 131607089 1 + C A LUAD 131607104 + 131607084 131607124 41 GAGCCCGTGGCCGCGGAGCCCAAGCAGTCAGGCTCCTTCCG GAGCCAGTGGCCGCGGAGCCCAAGCAGTCAGGCTCCTTCCG < 41bp 1 0.669232795116367 1 0.308423817157745 experiment 0.661534409767267 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131607104 chr5:131607089 synonymous SNV . 0 6 hm5C_associated_SNPs_26684 0 0 1 0 2 PDLIM4 chr5:131607159 5'GT 131607159 Upstream 71bp
chr17 54912529 54912529 1 + C T LUAD 54912549 + 54912529 54912569 41 CACCACTGGATCCGGGGCAACGTGCCCCTGTGCAGTTACTG TACCACTGGATCCGGGGCAACGTGCCCCTGTGCAGTTACTG < 41bp 1 0.316663157126868 1 0.217803537845612 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKE ENSG00000153933 CDS Human protein_coding chr17:54912549 chr17:54912529 nonsynonymous SNV 1.000 5 1 hm5C_associated_SNPs_26685 0 0 1 0 1 DGKE chr17:54912620 5'GT 54912620 Upstream 92bp
chr3 47456482 47456482 1 - C A LUAD 47456479 - 47456459 47456499 41 GGCCTTTTGTCCTCAGGGACCCCAGGGCGGGGCAGTTCCCC GGCCTTTTGTCCTCAGGTACCCCAGGGCGGGGCAGTTCCCC < 41bp 1 0.22449932473355 1 0.140099227428436 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SCAP ENSG00000114650 CDS Human protein_coding chr3:47456479 chr3:47456482 synonymous SNV . 0 18 hm5C_associated_SNPs_26686 0 0 1 0 1 SCAP chr3:47456483 3'AG 47456483 Downstream 2bp
chr2 128867293 128867293 1 + A G LUAD 128867287 + 128867267 128867307 41 GAAGACTTGTGAATCTGATACCCTTGAGGCTCTTCTACTGA GAAGACTTGTGAATCTGATACCCTTGGGGCTCTTCTACTGA < 41bp 1 0.0409666393607709 1 0.0562422871589661 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128867287 chr2:128867293 nonsynonymous SNV 0.107 0 27 hm5C_associated_SNPs_26688 0 0 1 0 2 UGGT1 chr2:128867208 3'AG 128867208 Downstream 86bp
chr2 128867293 128867293 1 + A G LUAD 128867287 + 128867267 128867307 41 GAAGACTTGTGAATCTGATACCCTTGAGGCTCTTCTACTGA GAAGACTTGTGAATCTGATACCCTTGGGGCTCTTCTACTGA < 41bp 1 0.0409666393607709 1 0.0562422871589661 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128867287 chr2:128867293 nonsynonymous SNV 0.107 0 27 hm5C_associated_SNPs_26688 0 0 1 0 2 UGGT1 chr2:128867320 5'GT 128867320 Upstream 28bp
chr19 35761990 35761990 1 + A G LUAD 35762006 + 35761986 35762026 41 AAAAATTGATGGAACCAGAACACCCCGAGATGAGAGGAGAA AAAAGTTGATGGAACCAGAACACCCCGAGATGAGAGGAGAA < 41bp 1 0.138654504006609 1 0.347886055707932 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USF2 ENSG00000105698 CDS Human protein_coding chr19:35762006 chr19:35761990 nonsynonymous SNV 0.995 2 5 hm5C_associated_SNPs_26690 0 0 1 0 2 USF2 chr19:35761986 3'AG 35761986 Downstream 5bp
chr19 35761990 35761990 1 + A G LUAD 35762006 + 35761986 35762026 41 AAAAATTGATGGAACCAGAACACCCCGAGATGAGAGGAGAA AAAAGTTGATGGAACCAGAACACCCCGAGATGAGAGGAGAA < 41bp 1 0.138654504006609 1 0.347886055707932 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USF2 ENSG00000105698 CDS Human protein_coding chr19:35762006 chr19:35761990 nonsynonymous SNV 0.995 2 5 hm5C_associated_SNPs_26690 0 0 1 0 2 USF2 chr19:35762044 5'GT 35762044 Upstream 55bp
chr3 9854722 9854722 1 + A T LUAD 9854727 + 9854707 9854747 41 GATGGTCCATCGCTCAGGCCCCACCCTGCTGCCACCCCAGA GATGGTCCATCGCTCTGGCCCCACCCTGCTGCCACCCCAGA < 41bp 1 0.0821279246227912 1 0.0412717759609222 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARPC4-TTLL3;TTLL3 ENSG00000214021;ENSG00000250151 CDS Human other chr3:9854727 chr3:9854722 synonymous SNV . 0 16 hm5C_associated_SNPs_26692 0 0 1 0 2 ARPC4-TTLL3;TTLL3 chr3:9854627 3'AG 9854627 Downstream 96bp
chr3 9854722 9854722 1 + A T LUAD 9854727 + 9854707 9854747 41 GATGGTCCATCGCTCAGGCCCCACCCTGCTGCCACCCCAGA GATGGTCCATCGCTCTGGCCCCACCCTGCTGCCACCCCAGA < 41bp 1 0.0821279246227912 1 0.0412717759609222 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARPC4-TTLL3;TTLL3 ENSG00000214021;ENSG00000250151 CDS Human other chr3:9854727 chr3:9854722 synonymous SNV . 0 16 hm5C_associated_SNPs_26692 0 0 1 0 2 ARPC4-TTLL3;TTLL3 chr3:9854795 5'GT 9854795 Upstream 74bp
chr15 101447433 101447433 1 + T C LUAD 101447426 + 101447406 101447446 41 ACTCACAGCAGCCGTGTTCACAAAAAATCTCGACAAAGCCC ACTCACAGCAGCCGTGTTCACAAAAAACCTCGACAAAGCCC < 41bp 1 0.772654718402098 1 0.45469081401825 experiment 0.454690563195805 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101447426 chr15:101447433 synonymous SNV . 0 28 hm5C_associated_SNPs_26695 0 0 0 0 1 ALDH1A3 chr15:101447483 5'GT 101447483 Upstream 51bp
chr11 8704331 8704331 1 + A T LUAD 8704345 + 8704325 8704365 41 TGGCGAAGGCCTTCCTTTTTCGTCTGGGCTGCCAACATGGT TGGCGATGGCCTTCCTTTTTCGTCTGGGCTGCCAACATGGT < 41bp 1 0.421331183338637 1 0.374651849269867 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL27A ENSG00000166441 UTR5 Human protein_coding chr11:8704345 chr11:8704331 . . 0 7 hm5C_associated_SNPs_26696 0 0 1 0 1 RPL27A chr11:8704363 5'GT 8704363 Upstream 33bp
chr11 8704331 8704331 1 + A T LUAD 8704348 + 8704328 8704368 41 CGAAGGCCTTCCTTTTTCGTCTGGGCTGCCAACATGGTAGG CGATGGCCTTCCTTTTTCGTCTGGGCTGCCAACATGGTAGG < 41bp 1 0.672733928303903 1 0.186824142932892 experiment 0.654532143392193 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL27A ENSG00000166441 UTR5 Human protein_coding chr11:8704348 chr11:8704331 . . 0 4 hm5C_associated_SNPs_26697 0 0 1 0 1 RPL27A chr11:8704363 5'GT 8704363 Upstream 33bp
chr11 67075183 67075183 1 + C T LUAD 67075191 + 67075171 67075211 41 CTGGAGTCTCTGCGGCCTCCCAGCGCCGAGCCTGGCGGGTC CTGGAGTCTCTGTGGCCTCCCAGCGCCGAGCCTGGCGGGTC < 41bp 1 0.679032439140951 1 0.774988532066345 experiment 0.641935121718097 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075191 chr11:67075183 nonsynonymous SNV 0.847 3 13 hm5C_associated_SNPs_26698 0 0 1 0 1 SSH3 chr11:67075208 5'GT 67075208 Upstream 26bp
chr8 145695012 145695012 1 + A G LUAD 145695008 + 145694988 145695028 41 CCGCCTAGACTGGGTCTTCCCTCCAGACGCCAGCCAGGAGG CCGCCTAGACTGGGTCTTCCCTCCGGACGCCAGCCAGGAGG < 41bp 1 0.739769015081553 1 0.943302989006042 experiment 0.520461969836895 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145695008 chr8:145695012 synonymous SNV . 0 25 hm5C_associated_SNPs_26699 0 0 1 0 1 KIFC2 chr8:145695030 5'GT 145695030 Upstream 19bp
chr16 56667670 56667670 1 + C T LUAD 56667667 + 56667647 56667687 41 TCCCCTTCTTCCCCAGGCTGCTGCTCCTGCTGCCCCGTGGG TCCCCTTCTTCCCCAGGCTGCTGTTCCTGCTGCCCCGTGGG < 41bp 1 0.133145821723167 1 0.0779502391815186 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MT1M ENSG00000205364 CDS Human protein_coding chr16:56667667 chr16:56667670 synonymous SNV . 0 24 hm5C_associated_SNPs_26704 0 0 0 1 1 MT1M chr16:56667663 3'AG 56667663 Downstream 8bp
chr3 16312542 16312542 1 + T C LUAD 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA CGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.237029427059967 1 0.163605570793152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312542 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_26705 0 0 1 20 2 OXNAD1 chr3:16312452 3'AG 16312452 Downstream 91bp
chr3 16312542 16312542 1 + T C LUAD 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA CGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.237029427059967 1 0.163605570793152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312542 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_26705 0 0 1 20 2 OXNAD1 chr3:16312578 5'GT 16312578 Upstream 37bp
chr5 908488 908488 1 + G T LUAD 908507 + 908487 908527 41 CGCCCGAAATGCCTGCAGGGCGGGCACCGAGCCATCAGATG CTCCCGAAATGCCTGCAGGGCGGGCACCGAGCCATCAGATG < 41bp 1 0.538778764017312 1 0.347386986017227 experiment 0.922442471965377 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908507 chr5:908488 nonsynonymous SNV 0.055 2 2 hm5C_associated_SNPs_26706 0 0 1 0 2 TRIP13 chr5:908470 3'AG 908470 Downstream 19bp
chr5 908488 908488 1 + G T LUAD 908507 + 908487 908527 41 CGCCCGAAATGCCTGCAGGGCGGGCACCGAGCCATCAGATG CTCCCGAAATGCCTGCAGGGCGGGCACCGAGCCATCAGATG < 41bp 1 0.538778764017312 1 0.347386986017227 experiment 0.922442471965377 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908507 chr5:908488 nonsynonymous SNV 0.055 2 2 hm5C_associated_SNPs_26706 0 0 1 0 2 TRIP13 chr5:908576 5'GT 908576 Upstream 89bp
chr5 14280534 14280534 1 + C A LUAD 14280517 + 14280497 14280537 41 GACAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCCTGT GACAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCATGT < 41bp 1 0.272192834210896 1 0.12235164642334 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14280517 chr5:14280534 synonymous SNV . 0 38 hm5C_associated_SNPs_26707 0 0 1 0 1 TRIO chr5:14280545 5'GT 14280545 Upstream 12bp
chr19 14030640 14030640 1 + C A LUAD 14030636 + 14030616 14030656 41 CGACTGGCCACCCAGGCTTCCCCCCAATCCAGGGCCTGGAG CGACTGGCCACCCAGGCTTCCCCCAAATCCAGGGCCTGGAG < 41bp 1 0.287720591003045 1 0.0628082752227783 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14030636 chr19:14030640 nonsynonymous SNV 0.962 4 25 hm5C_associated_SNPs_26709 0 0 1 0 1 CC2D1A chr19:14030631 3'AG 14030631 Downstream 10bp
chr4 79440603 79440603 1 + C A LUAD 79440588 + 79440568 79440608 41 GGCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT GGCCTCCTTGGAGCACCACACCGAGATGGAGTTTTATTTCT < 41bp 1 0.157947840970285 1 0.60049569606781 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440588 chr4:79440603 nonsynonymous SNV 0.989 3 36 hm5C_associated_SNPs_26710 0 0 1 0 1 FRAS1 chr4:79440635 5'GT 79440635 Upstream 33bp
chr4 79440603 79440603 1 + C A LUAD 79440589 + 79440569 79440609 41 GCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT GCCTCCTTGGAGCACCACACCGAGATGGAGTTTTATTTCTT < 41bp 1 0.390329373915371 1 0.681932866573334 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440589 chr4:79440603 nonsynonymous SNV 0.989 3 35 hm5C_associated_SNPs_26711 0 0 1 0 1 FRAS1 chr4:79440635 5'GT 79440635 Upstream 33bp
chr1 22336325 22336325 1 + C A LUAD 22336305 + 22336285 22336325 41 TGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTC TGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTA < 41bp 1 0.768336335705732 1 0.340334534645081 experiment 0.463327328588536 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336305 chr1:22336325 nonsynonymous SNV 0.111 4 41 hm5C_associated_SNPs_26712 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 26bp
chr1 22336325 22336325 1 + C A LUAD 22336307 + 22336287 22336327 41 CAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCG CAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTACG < 41bp 1 0.350129742317146 1 0.296161234378815 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336307 chr1:22336325 nonsynonymous SNV 0.111 4 39 hm5C_associated_SNPs_26713 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 26bp
chr1 22336325 22336325 1 + C A LUAD 22336314 + 22336294 22336334 41 ATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCAT ATCTGGAAGCCCACGGTGTTCACTCGAGTCTACGCCTTCAT < 41bp 1 0.371688890810146 1 0.0209057629108429 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336314 chr1:22336325 nonsynonymous SNV 0.111 4 32 hm5C_associated_SNPs_26714 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 26bp
chr1 22336325 22336325 1 + C A LUAD 22336318 + 22336298 22336338 41 GGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGAC GGAAGCCCACGGTGTTCACTCGAGTCTACGCCTTCATCGAC < 41bp 1 0.744963155382218 1 0.50898015499115 experiment 0.510073689235564 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336318 chr1:22336325 nonsynonymous SNV 0.111 4 28 hm5C_associated_SNPs_26715 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 26bp
chr1 22336325 22336325 1 + C A LUAD 22336323 + 22336303 22336343 41 CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT CCCACGGTGTTCACTCGAGTCTACGCCTTCATCGACTGGAT < 41bp 1 0.536823985358916 1 0.0737865567207336 experiment 0.926352029282168 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336323 chr1:22336325 nonsynonymous SNV 0.111 4 23 hm5C_associated_SNPs_26716 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 26bp
chr1 22336325 22336325 1 + C A LUAD 22336326 + 22336306 22336346 41 ACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGA ACGGTGTTCACTCGAGTCTACGCCTTCATCGACTGGATTGA < 41bp 1 0.424345648388955 1 0.0372670888900757 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336326 chr1:22336325 nonsynonymous SNV 0.111 4 20 hm5C_associated_SNPs_26717 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 26bp
chr1 22336325 22336325 1 + C A LUAD 22336329 + 22336309 22336349 41 GTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGA GTGTTCACTCGAGTCTACGCCTTCATCGACTGGATTGAGGA < 41bp 1 0.41111885439271 1 0.630635976791382 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336329 chr1:22336325 nonsynonymous SNV 0.111 4 17 hm5C_associated_SNPs_26718 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 26bp
chr1 22336325 22336325 1 + C A LUAD 22336332 + 22336312 22336352 41 TTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGT TTCACTCGAGTCTACGCCTTCATCGACTGGATTGAGGAGGT < 41bp 1 0.339552306126572 1 0.110031962394714 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336332 chr1:22336325 nonsynonymous SNV 0.111 4 14 hm5C_associated_SNPs_26719 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 26bp
chr1 22336325 22336325 1 + C A LUAD 22336335 + 22336315 22336355 41 ACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGTGAG ACTCGAGTCTACGCCTTCATCGACTGGATTGAGGAGGTGAG < 41bp 1 0.640473337122721 1 0.261810958385468 experiment 0.719053325754558 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336335 chr1:22336325 nonsynonymous SNV 0.111 4 11 hm5C_associated_SNPs_26720 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 26bp
chr10 43971253 43971253 1 + A G LUAD 43971248 + 43971228 43971268 41 GGACTCTGCTCAGAGGACCCCGTACAGAGACATGATGCTGG GGACTCTGCTCAGAGGACCCCGTACGGAGACATGATGCTGG < 41bp 1 0.428061235051805 1 0.238180100917816 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF487 ENSG00000243660 CDS Human protein_coding chr10:43971248 chr10:43971253 nonsynonymous SNV . 0 26 hm5C_associated_SNPs_26723 0 0 0 0 2 ZNF487 chr10:43971169 3'AG 43971169 Downstream 85bp
chr10 43971253 43971253 1 + A G LUAD 43971248 + 43971228 43971268 41 GGACTCTGCTCAGAGGACCCCGTACAGAGACATGATGCTGG GGACTCTGCTCAGAGGACCCCGTACGGAGACATGATGCTGG < 41bp 1 0.428061235051805 1 0.238180100917816 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF487 ENSG00000243660 CDS Human protein_coding chr10:43971248 chr10:43971253 nonsynonymous SNV . 0 26 hm5C_associated_SNPs_26723 0 0 0 0 2 ZNF487 chr10:43971295 5'GT 43971295 Upstream 43bp
chr4 123748452 123748452 1 + G T LUAD 123748458 + 123748438 123748478 41 GGGGGCTTCTTCCTGCGCATCCACCCCGACGGCCGAGTTGA GGGGGCTTCTTCCTTCGCATCCACCCCGACGGCCGAGTTGA < 41bp 1 0.14671908260317 1 0.0406529307365417 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGF2 ENSG00000138685 CDS Human protein_coding chr4:123748458 chr4:123748452 synonymous SNV . 0 15 hm5C_associated_SNPs_26724 0 0 1 0 1 FGF2 chr4:123748507 5'GT 123748507 Upstream 56bp
chr4 123748452 123748452 1 + G T LUAD 123748462 + 123748442 123748482 41 GCTTCTTCCTGCGCATCCACCCCGACGGCCGAGTTGACGGG GCTTCTTCCTTCGCATCCACCCCGACGGCCGAGTTGACGGG < 41bp 1 0.714247947644818 1 0.129297912120819 experiment 0.571504104710364 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGF2 ENSG00000138685 CDS Human protein_coding chr4:123748462 chr4:123748452 synonymous SNV . 0 11 hm5C_associated_SNPs_26725 0 0 1 0 1 FGF2 chr4:123748507 5'GT 123748507 Upstream 56bp
chr5 38885506 38885506 1 + G A LUAD 38885507 + 38885487 38885527 41 CCGAGGACTTCAAGACTTTGCACTGTACTTGGGATCCTGGG CCGAGGACTTCAAGACTTTACACTGTACTTGGGATCCTGGG < 41bp 1 0.424250034070679 1 0.0830346643924713 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OSMR ENSG00000145623 CDS Human protein_coding chr5:38885507 chr5:38885506 synonymous SNV . 0 20 hm5C_associated_SNPs_26726 0 0 1 0 2 OSMR chr5:38885451 3'AG 38885451 Downstream 56bp
chr5 38885506 38885506 1 + G A LUAD 38885507 + 38885487 38885527 41 CCGAGGACTTCAAGACTTTGCACTGTACTTGGGATCCTGGG CCGAGGACTTCAAGACTTTACACTGTACTTGGGATCCTGGG < 41bp 1 0.424250034070679 1 0.0830346643924713 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OSMR ENSG00000145623 CDS Human protein_coding chr5:38885507 chr5:38885506 synonymous SNV . 0 20 hm5C_associated_SNPs_26726 0 0 1 0 2 OSMR chr5:38885586 5'GT 38885586 Upstream 81bp
chr11 64054308 64054308 1 + C T LUAD 64054320 + 64054300 64054340 41 CCCGTCTGCCTGCAGTTCTTCACCTTGACGCTTATGAACCT CCCGTCTGTCTGCAGTTCTTCACCTTGACGCTTATGAACCT < 41bp 1 0.332917577113295 1 0.303435325622559 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPR137 ENSG00000173264 CDS Human protein_coding chr11:64054320 chr11:64054308 synonymous SNV . 0 9 hm5C_associated_SNPs_26727 0 0 1 0 1 GPR137 chr11:64054353 5'GT 64054353 Upstream 46bp
chr5 179150667 179150667 1 + G A LUAD 179150661 + 179150641 179150681 41 AGCCCTGTCTTGTTTTTCAGCCAGGCGTTGTGGGGCAGATG AGCCCTGTCTTGTTTTTCAGCCAGGCATTGTGGGGCAGATG < 41bp 1 0.422603036705362 1 0.388245314359665 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179150661 chr5:179150667 nonsynonymous SNV 0.019 1 27 hm5C_associated_SNPs_26728 0 0 1 0 1 CANX chr5:179150661 3'AG 179150661 Downstream 7bp
chr5 179150667 179150667 1 + G A LUAD 179150666 + 179150646 179150686 41 TGTCTTGTTTTTCAGCCAGGCGTTGTGGGGCAGATGATCGA TGTCTTGTTTTTCAGCCAGGCATTGTGGGGCAGATGATCGA < 41bp 1 0.207776453771208 1 0.13556444644928 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179150666 chr5:179150667 nonsynonymous SNV 0.019 1 22 hm5C_associated_SNPs_26729 0 0 1 0 1 CANX chr5:179150661 3'AG 179150661 Downstream 7bp
chr5 179150667 179150667 1 + G A LUAD 179150676 + 179150656 179150696 41 TTCAGCCAGGCGTTGTGGGGCAGATGATCGAGGCAGCTGAA TTCAGCCAGGCATTGTGGGGCAGATGATCGAGGCAGCTGAA < 41bp 1 0.404547419504536 1 0.368180334568024 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179150676 chr5:179150667 nonsynonymous SNV 0.019 1 12 hm5C_associated_SNPs_26730 0 0 1 0 1 CANX chr5:179150661 3'AG 179150661 Downstream 7bp
chr1 2419131 2419131 1 + C T LUAD 2419119 + 2419099 2419139 41 AAGATCCTCTTCAAAGACGTCATTGAAACCATCAACAAATA AAGATCCTCTTCAAAGACGTCATTGAAACCATTAACAAATA < 41bp 1 0.034101157065653 1 0.0523776412010193 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2419119 chr1:2419131 synonymous SNV . 0 33 hm5C_associated_SNPs_26731 0 0 0 0 2 PLCH2 chr1:2419037 3'AG 2419037 Downstream 95bp
chr1 2419131 2419131 1 + C T LUAD 2419119 + 2419099 2419139 41 AAGATCCTCTTCAAAGACGTCATTGAAACCATCAACAAATA AAGATCCTCTTCAAAGACGTCATTGAAACCATTAACAAATA < 41bp 1 0.034101157065653 1 0.0523776412010193 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2419119 chr1:2419131 synonymous SNV . 0 33 hm5C_associated_SNPs_26731 0 0 0 0 2 PLCH2 chr1:2419157 5'GT 2419157 Upstream 27bp
chr1 164789339 164789339 1 + C G LUAD 164789352 + 164789332 164789372 41 TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA TCAAACTGTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA < 41bp 1 0.643372741707257 1 0.170636415481567 experiment 0.713254516585487 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789352 chr1:164789339 nonsynonymous SNV 1.000 5 8 hm5C_associated_SNPs_26733 0 0 0 0 2 PBX1 chr1:164789309 3'AG 164789309 Downstream 31bp
chr1 164789339 164789339 1 + C G LUAD 164789352 + 164789332 164789372 41 TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA TCAAACTGTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA < 41bp 1 0.643372741707257 1 0.170636415481567 experiment 0.713254516585487 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789352 chr1:164789339 nonsynonymous SNV 1.000 5 8 hm5C_associated_SNPs_26733 0 0 0 0 2 PBX1 chr1:164789421 5'GT 164789421 Upstream 83bp
chr12 121660769 121660769 1 + C T LUAD 121660778 + 121660758 121660798 41 ACAGGCAGGTGCGTAGCTTTCAACGGGTCTGTCAAGACGTG ACAGGCAGGTGTGTAGCTTTCAACGGGTCTGTCAAGACGTG < 41bp 1 0.792160024967665 1 0.689409494400024 experiment 0.41567995006467 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660778 chr12:121660769 synonymous SNV . 0 12 hm5C_associated_SNPs_26734 0 0 0 0 2 P2RX4 chr12:121660750 3'AG 121660750 Downstream 20bp
chr12 121660769 121660769 1 + C T LUAD 121660778 + 121660758 121660798 41 ACAGGCAGGTGCGTAGCTTTCAACGGGTCTGTCAAGACGTG ACAGGCAGGTGTGTAGCTTTCAACGGGTCTGTCAAGACGTG < 41bp 1 0.792160024967665 1 0.689409494400024 experiment 0.41567995006467 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660778 chr12:121660769 synonymous SNV . 0 12 hm5C_associated_SNPs_26734 0 0 0 0 2 P2RX4 chr12:121660846 5'GT 121660846 Upstream 78bp
chr8 22065020 22065020 1 + C T LUAD 22065011 + 22064991 22065031 41 CGGTCCAGCGAAAGGGCTTCCAGGCCTCCCACGCCACAGGT CGGTCCAGCGAAAGGGCTTCCAGGCCTCCTACGCCACAGGT < 41bp 1 0.50387624611678 1 0.758338272571564 experiment 0.992247507766441 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22065011 chr8:22065020 nonsynonymous SNV 0.346 0 30 hm5C_associated_SNPs_26735 0 0 0 0 1 BMP1 chr8:22065029 5'GT 22065029 Upstream 10bp
chr17 7838353 7838353 1 + C T LUAD 7838362 + 7838342 7838382 41 CAGCCCAAGCCCTGGAGGAGCTGTTTCCCCGCTACACCAGC CAGCCCAAGCCTTGGAGGAGCTGTTTCCCCGCTACACCAGC < 41bp 1 0.177691708355985 1 0.118254870176315 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNTROB ENSG00000170037 CDS Human protein_coding chr17:7838362 chr17:7838353 synonymous SNV . 0 12 hm5C_associated_SNPs_26736 0 0 1 0 1 CNTROB chr17:7838307 3'AG 7838307 Downstream 47bp
chr17 37676281 37676281 1 + A G LUAD 37676272 + 37676252 37676292 41 CTAGATCCTAGTAAGCGGTGCACAGCTGAACAGACCCTACA CTAGATCCTAGTAAGCGGTGCACAGCTGAGCAGACCCTACA < 41bp 1 0.180701581783849 1 0.130459606647491 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37676272 chr17:37676281 synonymous SNV . 0 30 hm5C_associated_SNPs_26737 0 0 1 0 1 CDK12 chr17:37676209 3'AG 37676209 Downstream 73bp
chr5 149751720 149751720 1 + A G LUAD 149751738 + 149751718 149751758 41 CAAGAAGCCAGAAGAGGAGTCAGAGAGTAGTGAGGAGGGAT CAGGAAGCCAGAAGAGGAGTCAGAGAGTAGTGAGGAGGGAT < 41bp 1 0.339947266026397 1 0.667501270771027 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149751738 chr5:149751720 nonsynonymous SNV 0.000 0 3 hm5C_associated_SNPs_26738 0 0 1 0 1 TCOF1 chr5:149751799 5'GT 149751799 Upstream 80bp
chr3 38287626 38287626 1 + C T LUAD 38287619 + 38287599 38287639 41 CTCCAAGTTCCAGAACAGATCTCTGCTCATCTACCTCAGCC CTCCAAGTTCCAGAACAGATCTCTGCTTATCTACCTCAGCC < 41bp 1 0.443228624159659 1 0.084006279706955 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OXSR1 ENSG00000172939 CDS Human protein_coding chr3:38287619 chr3:38287626 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_26739 0 0 1 0 2 OXSR1 chr3:38287566 3'AG 38287566 Downstream 61bp
chr3 38287626 38287626 1 + C T LUAD 38287619 + 38287599 38287639 41 CTCCAAGTTCCAGAACAGATCTCTGCTCATCTACCTCAGCC CTCCAAGTTCCAGAACAGATCTCTGCTTATCTACCTCAGCC < 41bp 1 0.443228624159659 1 0.084006279706955 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OXSR1 ENSG00000172939 CDS Human protein_coding chr3:38287619 chr3:38287626 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_26739 0 0 1 0 2 OXSR1 chr3:38287712 5'GT 38287712 Upstream 87bp
chr2 183622484 183622484 1 + G A LUAD 183622482 + 183622462 183622502 41 AGTATCATTCTTTTTGTGCCCAGGAAAACGTTCAAAGATAC AGTATCATTCTTTTTGTGCCCAAGAAAACGTTCAAAGATAC < 41bp 1 0.733800259123092 1 0.34348338842392 experiment 0.532399481753817 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183622482 chr2:183622484 synonymous SNV . 0 23 hm5C_associated_SNPs_26743 0 0 1 0 2 DNAJC10 chr2:183622419 3'AG 183622419 Downstream 66bp
chr2 183622484 183622484 1 + G A LUAD 183622482 + 183622462 183622502 41 AGTATCATTCTTTTTGTGCCCAGGAAAACGTTCAAAGATAC AGTATCATTCTTTTTGTGCCCAAGAAAACGTTCAAAGATAC < 41bp 1 0.733800259123092 1 0.34348338842392 experiment 0.532399481753817 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183622482 chr2:183622484 synonymous SNV . 0 23 hm5C_associated_SNPs_26743 0 0 1 0 2 DNAJC10 chr2:183622552 5'GT 183622552 Upstream 69bp
chr19 10812882 10812882 1 + G A LUAD 10812865 + 10812845 10812885 41 GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAATGAGA GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAATAAGA < 41bp 1 0.184304520908192 1 0.086523026227951 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10812865 chr19:10812882 nonsynonymous SNV 0.664 0 38 hm5C_associated_SNPs_26744 0 0 1 0 2 QTRT1 chr19:10812792 3'AG 10812792 Downstream 91bp
chr19 10812882 10812882 1 + G A LUAD 10812865 + 10812845 10812885 41 GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAATGAGA GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAATAAGA < 41bp 1 0.184304520908192 1 0.086523026227951 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10812865 chr19:10812882 nonsynonymous SNV 0.664 0 38 hm5C_associated_SNPs_26744 0 0 1 0 2 QTRT1 chr19:10812930 5'GT 10812930 Upstream 49bp
chr2 231328805 231328805 1 + G A LUAD 231328786 + 231328766 231328806 41 CCATTCTTTTGTGCAGTGATCAATAATGACAACCCTTTAGA CCATTCTTTTGTGCAGTGATCAATAATGACAACCCTTTAAA < 41bp 1 0.354147801415645 1 0.481035530567169 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SP100 ENSG00000067066 CDS Human protein_coding chr2:231328786 chr2:231328805 nonsynonymous SNV 0.009 2 40 hm5C_associated_SNPs_26745 0 0 0 0 2 SP100 chr2:231328782 3'AG 231328782 Downstream 24bp
chr2 231328805 231328805 1 + G A LUAD 231328786 + 231328766 231328806 41 CCATTCTTTTGTGCAGTGATCAATAATGACAACCCTTTAGA CCATTCTTTTGTGCAGTGATCAATAATGACAACCCTTTAAA < 41bp 1 0.354147801415645 1 0.481035530567169 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SP100 ENSG00000067066 CDS Human protein_coding chr2:231328786 chr2:231328805 nonsynonymous SNV 0.009 2 40 hm5C_associated_SNPs_26745 0 0 0 0 2 SP100 chr2:231328865 5'GT 231328865 Upstream 61bp
chr19 13051205 13051205 1 + C T LUAD 13051210 + 13051190 13051230 41 AGGATCCTGATGCTTCAAAACCGGAAGACTGGGATGAGCGG AGGATCCTGATGCTTTAAAACCGGAAGACTGGGATGAGCGG < 41bp 1 0.753640058895774 1 0.440314650535583 experiment 0.492719882208451 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051210 chr19:13051205 nonsynonymous SNV 0.738 1 16 hm5C_associated_SNPs_26746 0 0 1 0 1 CALR chr19:13051266 5'GT 13051266 Upstream 62bp
chr2 33526632 33526632 1 + G T LUAD 33526650 + 33526630 33526670 41 CAGTGCAGGAACACTGAGGGCTCTTTTCAATGTGTGTGTGA CATTGCAGGAACACTGAGGGCTCTTTTCAATGTGTGTGTGA < 41bp 1 0.149134782749845 1 0.0863726735115051 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33526650 chr2:33526632 nonsynonymous SNV 0.756 1 3 hm5C_associated_SNPs_26748 0 0 1 0 2 LTBP1 chr2:33526589 3'AG 33526589 Downstream 44bp
chr2 33526632 33526632 1 + G T LUAD 33526650 + 33526630 33526670 41 CAGTGCAGGAACACTGAGGGCTCTTTTCAATGTGTGTGTGA CATTGCAGGAACACTGAGGGCTCTTTTCAATGTGTGTGTGA < 41bp 1 0.149134782749845 1 0.0863726735115051 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33526650 chr2:33526632 nonsynonymous SNV 0.756 1 3 hm5C_associated_SNPs_26748 0 0 1 0 2 LTBP1 chr2:33526711 5'GT 33526711 Upstream 80bp
chr2 33526632 33526632 1 + G T LUAD 33526652 + 33526632 33526672 41 GTGCAGGAACACTGAGGGCTCTTTTCAATGTGTGTGTGACC TTGCAGGAACACTGAGGGCTCTTTTCAATGTGTGTGTGACC < 41bp 1 0.0398901602264914 1 0.032461553812027 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33526652 chr2:33526632 nonsynonymous SNV 0.756 1 1 hm5C_associated_SNPs_26749 0 0 1 0 2 LTBP1 chr2:33526589 3'AG 33526589 Downstream 44bp
chr2 33526632 33526632 1 + G T LUAD 33526652 + 33526632 33526672 41 GTGCAGGAACACTGAGGGCTCTTTTCAATGTGTGTGTGACC TTGCAGGAACACTGAGGGCTCTTTTCAATGTGTGTGTGACC < 41bp 1 0.0398901602264914 1 0.032461553812027 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33526652 chr2:33526632 nonsynonymous SNV 0.756 1 1 hm5C_associated_SNPs_26749 0 0 1 0 2 LTBP1 chr2:33526711 5'GT 33526711 Upstream 80bp
chr3 148562355 148562355 1 + T C LUAD 148562335 + 148562315 148562355 41 GTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGCT GTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGCC < 41bp 1 0.418456560215186 1 0.323558330535889 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562335 chr3:148562355 nonsynonymous SNV 0.896 4 41 hm5C_associated_SNPs_26750 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 91bp
chr3 148562355 148562355 1 + T C LUAD 148562335 + 148562315 148562355 41 GTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGCT GTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGCC < 41bp 1 0.418456560215186 1 0.323558330535889 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562335 chr3:148562355 nonsynonymous SNV 0.896 4 41 hm5C_associated_SNPs_26750 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 21bp
chr3 148562355 148562355 1 + T C LUAD 148562342 + 148562322 148562362 41 TTTTATGTCCTGCCTGTGCTCAATATTGATGGCTACATCTA TTTTATGTCCTGCCTGTGCTCAATATTGATGGCCACATCTA < 41bp 1 0.687585053238531 1 0.193345040082932 experiment 0.624829893522938 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562342 chr3:148562355 nonsynonymous SNV 0.896 4 34 hm5C_associated_SNPs_26751 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 91bp
chr3 148562355 148562355 1 + T C LUAD 148562342 + 148562322 148562362 41 TTTTATGTCCTGCCTGTGCTCAATATTGATGGCTACATCTA TTTTATGTCCTGCCTGTGCTCAATATTGATGGCCACATCTA < 41bp 1 0.687585053238531 1 0.193345040082932 experiment 0.624829893522938 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562342 chr3:148562355 nonsynonymous SNV 0.896 4 34 hm5C_associated_SNPs_26751 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 21bp
chr3 148562355 148562355 1 + T C LUAD 148562354 + 148562334 148562374 41 CCTGTGCTCAATATTGATGGCTACATCTACACCTGGACCAA CCTGTGCTCAATATTGATGGCCACATCTACACCTGGACCAA < 41bp 1 0.453223542372431 1 0.153868407011032 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562354 chr3:148562355 nonsynonymous SNV 0.896 4 22 hm5C_associated_SNPs_26752 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 91bp
chr3 148562355 148562355 1 + T C LUAD 148562354 + 148562334 148562374 41 CCTGTGCTCAATATTGATGGCTACATCTACACCTGGACCAA CCTGTGCTCAATATTGATGGCCACATCTACACCTGGACCAA < 41bp 1 0.453223542372431 1 0.153868407011032 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562354 chr3:148562355 nonsynonymous SNV 0.896 4 22 hm5C_associated_SNPs_26752 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 21bp
chr3 148562355 148562355 1 + T C LUAD 148562357 + 148562337 148562377 41 GTGCTCAATATTGATGGCTACATCTACACCTGGACCAAGGT GTGCTCAATATTGATGGCCACATCTACACCTGGACCAAGGT < 41bp 1 0.104499908184349 1 0.103228539228439 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562357 chr3:148562355 nonsynonymous SNV 0.896 4 19 hm5C_associated_SNPs_26753 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 91bp
chr3 148562355 148562355 1 + T C LUAD 148562357 + 148562337 148562377 41 GTGCTCAATATTGATGGCTACATCTACACCTGGACCAAGGT GTGCTCAATATTGATGGCCACATCTACACCTGGACCAAGGT < 41bp 1 0.104499908184349 1 0.103228539228439 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562357 chr3:148562355 nonsynonymous SNV 0.896 4 19 hm5C_associated_SNPs_26753 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 21bp
chr3 148562355 148562355 1 + T C LUAD 148562360 + 148562340 148562380 41 CTCAATATTGATGGCTACATCTACACCTGGACCAAGGTATA CTCAATATTGATGGCCACATCTACACCTGGACCAAGGTATA < 41bp 1 0.635022893881182 1 0.782113134860992 experiment 0.729954212237635 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562360 chr3:148562355 nonsynonymous SNV 0.896 4 16 hm5C_associated_SNPs_26754 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 91bp
chr3 148562355 148562355 1 + T C LUAD 148562360 + 148562340 148562380 41 CTCAATATTGATGGCTACATCTACACCTGGACCAAGGTATA CTCAATATTGATGGCCACATCTACACCTGGACCAAGGTATA < 41bp 1 0.635022893881182 1 0.782113134860992 experiment 0.729954212237635 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562360 chr3:148562355 nonsynonymous SNV 0.896 4 16 hm5C_associated_SNPs_26754 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 21bp
chr3 148562355 148562355 1 + T C LUAD 148562363 + 148562343 148562383 41 AATATTGATGGCTACATCTACACCTGGACCAAGGTATATGC AATATTGATGGCCACATCTACACCTGGACCAAGGTATATGC < 41bp 1 0.527061930621597 1 0.0998643040657043 experiment 0.945876138756805 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562363 chr3:148562355 nonsynonymous SNV 0.896 4 13 hm5C_associated_SNPs_26755 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 91bp
chr3 148562355 148562355 1 + T C LUAD 148562363 + 148562343 148562383 41 AATATTGATGGCTACATCTACACCTGGACCAAGGTATATGC AATATTGATGGCCACATCTACACCTGGACCAAGGTATATGC < 41bp 1 0.527061930621597 1 0.0998643040657043 experiment 0.945876138756805 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562363 chr3:148562355 nonsynonymous SNV 0.896 4 13 hm5C_associated_SNPs_26755 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 21bp
chr3 148562355 148562355 1 + T C LUAD 148562365 + 148562345 148562385 41 TATTGATGGCTACATCTACACCTGGACCAAGGTATATGCAC TATTGATGGCCACATCTACACCTGGACCAAGGTATATGCAC < 41bp 1 0.318230241944412 1 0.103054970502853 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562365 chr3:148562355 nonsynonymous SNV 0.896 4 11 hm5C_associated_SNPs_26756 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 91bp
chr3 148562355 148562355 1 + T C LUAD 148562365 + 148562345 148562385 41 TATTGATGGCTACATCTACACCTGGACCAAGGTATATGCAC TATTGATGGCCACATCTACACCTGGACCAAGGTATATGCAC < 41bp 1 0.318230241944412 1 0.103054970502853 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562365 chr3:148562355 nonsynonymous SNV 0.896 4 11 hm5C_associated_SNPs_26756 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 21bp
chrX 68059870 68059870 1 + C A LUAD 68059888 + 68059868 68059908 41 GTCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT GTAAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT < 41bp 1 0.167608370294327 1 0.0963639914989471 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059888 chrX:68059870 synonymous SNV . 0 3 hm5C_associated_SNPs_26757 0 0 0 0 2 EFNB1 chrX:68059803 3'AG 68059803 Downstream 68bp
chrX 68059870 68059870 1 + C A LUAD 68059888 + 68059868 68059908 41 GTCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT GTAAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT < 41bp 1 0.167608370294327 1 0.0963639914989471 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059888 chrX:68059870 synonymous SNV . 0 3 hm5C_associated_SNPs_26757 0 0 0 0 2 EFNB1 chrX:68059931 5'GT 68059931 Upstream 62bp
chr20 62312042 62312042 1 + C T LUAD 62312059 + 62312039 62312079 41 GGCCGGACTGCAGAAGCTGGCGGACATTATCCAGGTGGGGC GGCTGGACTGCAGAAGCTGGCGGACATTATCCAGGTGGGGC < 41bp 1 0.222125966213746 1 0.424872696399689 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62312059 chr20:62312042 synonymous SNV . 0 4 hm5C_associated_SNPs_26758 0 0 1 0 2 RTEL1 chr20:62312017 3'AG 62312017 Downstream 26bp
chr20 62312042 62312042 1 + C T LUAD 62312059 + 62312039 62312079 41 GGCCGGACTGCAGAAGCTGGCGGACATTATCCAGGTGGGGC GGCTGGACTGCAGAAGCTGGCGGACATTATCCAGGTGGGGC < 41bp 1 0.222125966213746 1 0.424872696399689 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62312059 chr20:62312042 synonymous SNV . 0 4 hm5C_associated_SNPs_26758 0 0 1 0 2 RTEL1 chr20:62312072 5'GT 62312072 Upstream 31bp
chr19 11145653 11145653 1 + G T LUAD 11145668 + 11145648 11145688 41 TCATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGAC TCATGTAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGAC < 41bp 1 0.0822640245288171 1 0.0778112709522247 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145668 chr19:11145653 stopgain 0.998 1 6 hm5C_associated_SNPs_26759 0 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 64bp
chr19 11145653 11145653 1 + G T LUAD 11145669 + 11145649 11145689 41 CATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACG CATGTAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACG < 41bp 1 0.180216196078568 1 0.158548444509506 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145669 chr19:11145653 stopgain 0.998 1 5 hm5C_associated_SNPs_26760 0 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 64bp
chr19 11145653 11145653 1 + G T LUAD 11145672 + 11145652 11145692 41 GGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACGACG GTAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACGACG < 41bp 1 0.594400125354056 1 0.610330581665039 experiment 0.811199749291887 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145672 chr19:11145653 stopgain 0.998 1 2 hm5C_associated_SNPs_26761 0 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 64bp
chr5 128440942 128440942 1 + G A LUAD 128440946 + 128440926 128440966 41 TACCCTAAAGGTCTTGGGAGCACGGTTCAAGAAATTGATTT TACCCTAAAGGTCTTGAGAGCACGGTTCAAGAAATTGATTT < 41bp 1 0.660000235488165 1 0.41410368680954 experiment 0.67999952902367 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128440946 chr5:128440942 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_26762 0 0 1 0 1 ISOC1 chr5:128440878 3'AG 128440878 Downstream 65bp
chr4 123260563 123260563 1 + G T LUAD 123260543 + 123260523 123260563 41 GAGTGGAACAAAGACTTCTGCTAGCAAAACTGGAATACCAG GAGTGGAACAAAGACTTCTGCTAGCAAAACTGGAATACCAT < 41bp 1 0.107521506198136 1 0.335877299308777 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123260543 chr4:123260563 nonsynonymous SNV 0.929 2 41 hm5C_associated_SNPs_26763 0 0 0 0 1 KIAA1109 chr4:123260563 5'GT 123260563 Upstream 1bp
chr1 228523918 228523918 1 + C A LUAD 228523904 + 228523884 228523924 41 CCCCTTCACCTGTTTAGGACCACACAAGCCATCTCAGCACA CCCCTTCACCTGTTTAGGACCACACAAGCCATCTAAGCACA < 41bp 1 0.0384945273593415 1 0.168112725019455 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228523904 chr1:228523918 stopgain 0.001 0 35 hm5C_associated_SNPs_26764 0 0 0 0 2 OBSCN chr1:228523901 3'AG 228523901 Downstream 18bp
chr1 228523918 228523918 1 + C A LUAD 228523904 + 228523884 228523924 41 CCCCTTCACCTGTTTAGGACCACACAAGCCATCTCAGCACA CCCCTTCACCTGTTTAGGACCACACAAGCCATCTAAGCACA < 41bp 1 0.0384945273593415 1 0.168112725019455 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228523904 chr1:228523918 stopgain 0.001 0 35 hm5C_associated_SNPs_26764 0 0 0 0 2 OBSCN chr1:228523971 5'GT 228523971 Upstream 54bp
chr11 94599272 94599272 1 + T C LUAD 94599284 + 94599264 94599304 41 CAGACCTCTCTTACCAGCAGCCAGCTGGCTGAGGAAAAGAA CAGACCTCCCTTACCAGCAGCCAGCTGGCTGAGGAAAAGAA < 41bp 1 0.0266962445090205 1 0.155204087495804 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94599284 chr11:94599272 synonymous SNV . 0 9 hm5C_associated_SNPs_26765 0 0 1 0 1 AMOTL1 chr11:94599333 5'GT 94599333 Upstream 62bp
chr11 94599272 94599272 1 + T C LUAD 94599292 + 94599272 94599312 41 TCTTACCAGCAGCCAGCTGGCTGAGGAAAAGAAGGAAGAGA CCTTACCAGCAGCCAGCTGGCTGAGGAAAAGAAGGAAGAGA < 41bp 1 0.515773459176225 1 0.472280561923981 experiment 0.968453081647551 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94599292 chr11:94599272 synonymous SNV . 0 1 hm5C_associated_SNPs_26766 0 0 1 0 1 AMOTL1 chr11:94599333 5'GT 94599333 Upstream 62bp
chr2 97008585 97008585 1 + A G LUAD 97008573 + 97008553 97008593 41 TAAACAGAAAGACACCGAACCAACCAACTTTAAAGTAAGAA TAAACAGAAAGACACCGAACCAACCAACTTTAGAGTAAGAA < 41bp 1 0.0559675963321005 1 0.202159583568573 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCAPH ENSG00000121152 CDS Human protein_coding chr2:97008573 chr2:97008585 nonsynonymous SNV 0.997 4 33 hm5C_associated_SNPs_26768 0 0 1 0 2 NCAPH chr2:97008494 3'AG 97008494 Downstream 92bp
chr2 97008585 97008585 1 + A G LUAD 97008573 + 97008553 97008593 41 TAAACAGAAAGACACCGAACCAACCAACTTTAAAGTAAGAA TAAACAGAAAGACACCGAACCAACCAACTTTAGAGTAAGAA < 41bp 1 0.0559675963321005 1 0.202159583568573 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCAPH ENSG00000121152 CDS Human protein_coding chr2:97008573 chr2:97008585 nonsynonymous SNV 0.997 4 33 hm5C_associated_SNPs_26768 0 0 1 0 2 NCAPH chr2:97008586 5'GT 97008586 Upstream 2bp
chr3 66430824 66430824 1 - G A LUAD 66430812 - 66430792 66430832 41 GTCCAGAGCGCGCGGAAGCCCAGTACTTGCTTGTTTCCAAT GTCCAGAGTGCGCGGAAGCCCAGTACTTGCTTGTTTCCAAT < 41bp 1 0.556522140268461 1 0.238210767507553 experiment 0.886955719463077 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430812 chr3:66430824 nonsynonymous SNV 0.001 2 9 hm5C_associated_SNPs_26769 0 0 0 0 1 LRIG1 chr3:66430913 3'AG 66430913 Downstream 90bp
chr2 182784139 182784139 1 + G T LUAD 182784123 + 182784103 182784143 41 GCCTGCTGGGCCTGGAGGAGCAGCTTCGTGCTGTGCGCATG GCCTGCTGGGCCTGGAGGAGCAGCTTCGTGCTGTGCTCATG < 41bp 1 0.75552415428052 1 0.208286732435226 experiment 0.488951691438959 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182784123 chr2:182784139 nonsynonymous SNV 0.000 1 37 hm5C_associated_SNPs_26771 0 0 1 0 1 SSFA2 chr2:182784173 5'GT 182784173 Upstream 35bp
chr3 49758482 49758482 1 + C G LUAD 49758471 + 49758451 49758491 41 AGCCCACCAGTGAGGAGGACCTCTGCCCCATCTGCTATGCC AGCCCACCAGTGAGGAGGACCTCTGCCCCATGTGCTATGCC < 41bp 1 0.122359814463204 1 0.263501465320587 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49758471 chr3:49758482 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_26772 0 0 0 0 2 RNF123 chr3:49758453 3'AG 49758453 Downstream 30bp
chr3 49758482 49758482 1 + C G LUAD 49758471 + 49758451 49758491 41 AGCCCACCAGTGAGGAGGACCTCTGCCCCATCTGCTATGCC AGCCCACCAGTGAGGAGGACCTCTGCCCCATGTGCTATGCC < 41bp 1 0.122359814463204 1 0.263501465320587 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49758471 chr3:49758482 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_26772 0 0 0 0 2 RNF123 chr3:49758538 5'GT 49758538 Upstream 57bp
chr17 73738716 73738716 1 + G T LUAD 73738719 + 73738699 73738739 41 AGCTGGTGGACGTACGGGTGCCCCTCTTTATCCGGCCTGAG AGCTGGTGGACGTACGGTTGCCCCTCTTTATCCGGCCTGAG < 41bp 1 0.167560831488143 1 0.0322897434234619 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73738719 chr17:73738716 nonsynonymous SNV 0.954 4 18 hm5C_associated_SNPs_26774 0 0 0 0 1 ITGB4 chr17:73738663 3'AG 73738663 Downstream 54bp
chr2 172951500 172951500 1 + C T LUAD 172951509 + 172951489 172951529 41 CAGGCTTTGAACCGGAGGTTCCAGCAAACTCAGTACCTAGC CAGGCTTTGAATCGGAGGTTCCAGCAAACTCAGTACCTAGC < 41bp 1 0.109448649984982 1 0.065935492515564 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DLX1 ENSG00000144355 CDS Human protein_coding chr2:172951509 chr2:172951500 synonymous SNV . 0 12 hm5C_associated_SNPs_26775 0 0 0 0 1 DLX1 chr2:172951581 5'GT 172951581 Upstream 82bp
chr2 74682700 74682700 1 + G A LUAD 74682720 + 74682700 74682740 41 GGGGGACAAGTCCTGGGGACCAAGAGGTGAGGCCAAGAGGG AGGGGACAAGTCCTGGGGACCAAGAGGTGAGGCCAAGAGGG < 41bp 1 0.752051587237152 1 0.81641960144043 experiment 0.495896825525695 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control INO80B ENSG00000115274 CDS Human protein_coding chr2:74682720 chr2:74682700 nonsynonymous SNV 0.947 4 1 hm5C_associated_SNPs_26776 0 0 1 0 1 INO80B chr2:74682725 5'GT 74682725 Upstream 26bp
chr10 103908224 103908224 1 + C T LUAD 103908226 + 103908206 103908246 41 CATCCTCATCATCCAGTTCTCGAAGCCGCTCACGATCCCCA CATCCTCATCATCCAGTTTTCGAAGCCGCTCACGATCCCCA < 41bp 1 0.472017444744396 1 0.804883599281311 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103908226 chr10:103908224 nonsynonymous SNV 0.974 2 19 hm5C_associated_SNPs_26778 0 0 1 0 2 PPRC1 chr10:103908129 3'AG 103908129 Downstream 96bp
chr10 103908224 103908224 1 + C T LUAD 103908226 + 103908206 103908246 41 CATCCTCATCATCCAGTTCTCGAAGCCGCTCACGATCCCCA CATCCTCATCATCCAGTTTTCGAAGCCGCTCACGATCCCCA < 41bp 1 0.472017444744396 1 0.804883599281311 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103908226 chr10:103908224 nonsynonymous SNV 0.974 2 19 hm5C_associated_SNPs_26778 0 0 1 0 2 PPRC1 chr10:103908278 5'GT 103908278 Upstream 55bp
chr3 45537832 45537832 1 + A G LUAD 45537850 + 45537830 45537870 41 CTACTTCAGATACACTGACCCTCATAATCCACACAGGTAAA CTGCTTCAGATACACTGACCCTCATAATCCACACAGGTAAA < 41bp 1 0.160548335739208 1 0.0368391573429108 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LARS2 ENSG00000011376 CDS Human protein_coding chr3:45537850 chr3:45537832 nonsynonymous SNV 0.995 4 3 hm5C_associated_SNPs_26779 0 0 1 0 2 LARS2 chr3:45537767 3'AG 45537767 Downstream 66bp
chr3 45537832 45537832 1 + A G LUAD 45537850 + 45537830 45537870 41 CTACTTCAGATACACTGACCCTCATAATCCACACAGGTAAA CTGCTTCAGATACACTGACCCTCATAATCCACACAGGTAAA < 41bp 1 0.160548335739208 1 0.0368391573429108 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LARS2 ENSG00000011376 CDS Human protein_coding chr3:45537850 chr3:45537832 nonsynonymous SNV 0.995 4 3 hm5C_associated_SNPs_26779 0 0 1 0 2 LARS2 chr3:45537865 5'GT 45537865 Upstream 34bp
chr17 45673790 45673790 1 + C T LUAD 45673802 + 45673782 45673822 41 GGACCAAACAAATGGGATTTCCCCTCATTTATGTGGAAGCT GGACCAAATAAATGGGATTTCCCCTCATTTATGTGGAAGCT < 41bp 1 0.131839362675134 1 0.127249509096146 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45673802 chr17:45673790 stopgain 1.000 1 9 hm5C_associated_SNPs_26780 0 0 1 0 2 NPEPPS chr17:45673719 3'AG 45673719 Downstream 72bp
chr17 45673790 45673790 1 + C T LUAD 45673802 + 45673782 45673822 41 GGACCAAACAAATGGGATTTCCCCTCATTTATGTGGAAGCT GGACCAAATAAATGGGATTTCCCCTCATTTATGTGGAAGCT < 41bp 1 0.131839362675134 1 0.127249509096146 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45673802 chr17:45673790 stopgain 1.000 1 9 hm5C_associated_SNPs_26780 0 0 1 0 2 NPEPPS chr17:45673828 5'GT 45673828 Upstream 39bp
chr9 74817551 74817551 1 + A T LUAD 74817563 + 74817543 74817583 41 TTGCTGGAAGTAGCATAGACCTGCCACTCTTGGAGTGGCTG TTGCTGGATGTAGCATAGACCTGCCACTCTTGGAGTGGCTG < 41bp 1 0.278137344407954 1 0.0428202748298645 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GDA ENSG00000119125 CDS Human protein_coding chr9:74817563 chr9:74817551 nonsynonymous SNV 0.918 1 9 hm5C_associated_SNPs_26781 0 0 0 0 1 GDA chr9:74817487 3'AG 74817487 Downstream 65bp
chr12 113715048 113715048 1 + C T LUAD 113715049 + 113715029 113715069 41 CTTCCCTCTCCCCCAGAGGCCTGCCGGCATCTCCTACAGGC CTTCCCTCTCCCCCAGAGGTCTGCCGGCATCTCCTACAGGC < 41bp 1 0.341827158147205 1 0.0597029328346252 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113715049 chr12:113715048 nonsynonymous SNV 0.966 4 20 hm5C_associated_SNPs_26782 0 0 1 0 1 TPCN1 chr12:113715045 3'AG 113715045 Downstream 4bp
chr19 45912960 45912960 1 - C G LUAD 45912980 - 45912960 45913000 41 TTCTCCCTCCCATCCAGGCCCGGAGGCTGTTTGATGTCCTG TTCTCCCTCCCATCCAGGCCCGGAGGCTGTTTGATGTCCTC < 41bp 1 0.412079756982945 1 0.522021889686584 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ERCC1 ENSG00000012061 CDS Human protein_coding chr19:45912980 chr19:45912960 nonsynonymous SNV 0.786 0 41 hm5C_associated_SNPs_26790 0 0 0 0 1 ERCC1 chr19:45912983 3'AG 45912983 Downstream 24bp
chr2 97875437 97875437 1 + A T LUAD 97875436 + 97875416 97875456 41 AGTGTCTTCTCGGAAAAAACCAGCCTTGAAGGTAATGAAAC AGTGTCTTCTCGGAAAAAACCTGCCTTGAAGGTAATGAAAC < 41bp 1 0.279962257874806 1 0.211639106273651 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD36 ENSG00000135976 CDS Human protein_coding chr2:97875436 chr2:97875437 synonymous SNV . 0 22 hm5C_associated_SNPs_26791 0 0 0 0 1 ANKRD36 chr2:97875446 5'GT 97875446 Upstream 10bp
chr6 107100441 107100441 1 + G T LUAD 107100423 + 107100403 107100443 41 ATTCATGCTTCCCAGTTTGGCAGATGTGAGCAAACTATGTA ATTCATGCTTCCCAGTTTGGCAGATGTGAGCAAACTATTTA < 41bp 1 0.509419211965064 1 0.446815878152847 experiment 0.981161576069872 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control QRSL1 ENSG00000130348 CDS Human protein_coding chr6:107100423 chr6:107100441 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_26794 0 0 1 0 2 QRSL1 chr6:107100342 3'AG 107100342 Downstream 100bp
chr6 107100441 107100441 1 + G T LUAD 107100423 + 107100403 107100443 41 ATTCATGCTTCCCAGTTTGGCAGATGTGAGCAAACTATGTA ATTCATGCTTCCCAGTTTGGCAGATGTGAGCAAACTATTTA < 41bp 1 0.509419211965064 1 0.446815878152847 experiment 0.981161576069872 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control QRSL1 ENSG00000130348 CDS Human protein_coding chr6:107100423 chr6:107100441 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_26794 0 0 1 0 2 QRSL1 chr6:107100457 5'GT 107100457 Upstream 17bp
chr19 36227600 36227600 1 + C T LUAD 36227620 + 36227600 36227640 41 CGAGCTCTGAGGAAGAGCCTCCATCCCCAGATGATAAAGAG TGAGCTCTGAGGAAGAGCCTCCATCCCCAGATGATAAAGAG < 41bp 1 0.00769621872998638 1 0.0831719040870667 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36227620 chr19:36227600 nonsynonymous SNV 0.995 3 1 hm5C_associated_SNPs_26802 0 0 1 0 1 KMT2B chr19:36227591 3'AG 36227591 Downstream 10bp
chr16 57144676 57144676 1 + G A LUAD 57144680 + 57144660 57144700 41 CCACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCCC CCACATACCCAGTGGGAGTGCCCCAGCAGCGGGGGCAGCCC < 41bp 1 0.629845368413643 1 0.437915503978729 experiment 0.740309263172714 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144680 chr16:57144676 nonsynonymous SNV 0.025 0 17 hm5C_associated_SNPs_26803 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 57bp
chr16 57144676 57144676 1 + G A LUAD 57144681 + 57144661 57144701 41 CACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCCCC CACATACCCAGTGGGAGTGCCCCAGCAGCGGGGGCAGCCCC < 41bp 1 0.235494650708501 1 0.291856437921524 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144681 chr16:57144676 nonsynonymous SNV 0.025 0 16 hm5C_associated_SNPs_26804 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 57bp
chr16 57144676 57144676 1 + G A LUAD 57144682 + 57144662 57144702 41 ACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCCCCC ACATACCCAGTGGGAGTGCCCCAGCAGCGGGGGCAGCCCCC < 41bp 1 0.36997382727193 1 0.380701333284378 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144682 chr16:57144676 nonsynonymous SNV 0.025 0 15 hm5C_associated_SNPs_26805 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 57bp
chr16 57144676 57144676 1 + G A LUAD 57144695 + 57144675 57144715 41 GGGTGCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGT GAGTGCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGT < 41bp 1 0.202291372674619 1 0.241925120353699 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144695 chr16:57144676 nonsynonymous SNV 0.025 0 2 hm5C_associated_SNPs_26806 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 57bp
chr2 101598836 101598836 1 + C G LUAD 101598827 + 101598807 101598847 41 CAGCTCTGCCTGGTCCAGGACTCCAACGTCCAGGTGATCCC CAGCTCTGCCTGGTCCAGGACTCCAACGTGCAGGTGATCCC < 41bp 1 0.685454178079431 1 0.977352142333984 experiment 0.629091643841138 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101598827 chr2:101598836 synonymous SNV . 0 30 hm5C_associated_SNPs_26807 0 0 1 0 1 NPAS2 chr2:101598839 5'GT 101598839 Upstream 4bp
chr6 142519584 142519584 1 + G A LUAD 142519603 + 142519583 142519623 41 AGAAAATGAAGATGCTGGAGCAGCCTCTCTGCCCACTCAGC AAAAAATGAAGATGCTGGAGCAGCCTCTCTGCCCACTCAGC < 41bp 1 0.28695660662256 1 0.234887003898621 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VTA1 ENSG00000009844 CDS Human protein_coding chr6:142519603 chr6:142519584 nonsynonymous SNV 1.000 0 2 hm5C_associated_SNPs_26808 0 0 1 1 1 VTA1 chr6:142519576 3'AG 142519576 Downstream 9bp
chr3 9488802 9488802 1 + G A LUAD 9488809 + 9488789 9488829 41 AAAGAAAGAAGCGGCGGGATCAGCCCTTGGAACAGAGCAAC AAAGAAAGAAGCGACGGGATCAGCCCTTGGAACAGAGCAAC < 41bp 1 0.317061313042295 1 0.469285249710083 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SETD5 ENSG00000168137 CDS Human protein_coding chr3:9488809 chr3:9488802 synonymous SNV . 0 14 hm5C_associated_SNPs_26810 0 0 1 0 1 SETD5 chr3:9488734 3'AG 9488734 Downstream 69bp
chr19 11422865 11422865 1 + G A LUAD 11422851 + 11422831 11422871 41 TCCTAAAAATCACCAAGACTCAGAGCTTCACCCTGAGTGGG TCCTAAAAATCACCAAGACTCAGAGCTTCACCCTAAGTGGG < 41bp 1 0.657377965958786 1 0.60783314704895 experiment 0.685244068082427 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TSPAN16 ENSG00000130167 CDS Human protein_coding chr19:11422851 chr19:11422865 synonymous SNV . 0 35 hm5C_associated_SNPs_26811 0 0 0 1 2 TSPAN16 chr19:11422815 3'AG 11422815 Downstream 51bp
chr19 11422865 11422865 1 + G A LUAD 11422851 + 11422831 11422871 41 TCCTAAAAATCACCAAGACTCAGAGCTTCACCCTGAGTGGG TCCTAAAAATCACCAAGACTCAGAGCTTCACCCTAAGTGGG < 41bp 1 0.657377965958786 1 0.60783314704895 experiment 0.685244068082427 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TSPAN16 ENSG00000130167 CDS Human protein_coding chr19:11422851 chr19:11422865 synonymous SNV . 0 35 hm5C_associated_SNPs_26811 0 0 0 1 2 TSPAN16 chr19:11422898 5'GT 11422898 Upstream 34bp
chr5 61778980 61778980 1 + G C LUAD 61778983 + 61778963 61779003 41 TACTCCTCTAATTCAGAGATCACTGGAATTTTCTGTAAGCT TACTCCTCTAATTCAGACATCACTGGAATTTTCTGTAAGCT < 41bp 1 0.126766469122691 1 0.105482041835785 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IPO11 ENSG00000086200 CDS Human protein_coding chr5:61778983 chr5:61778980 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_26812 0 0 1 0 1 IPO11 chr5:61778928 3'AG 61778928 Downstream 53bp
chr1 227923162 227923162 1 + C G LUAD 227923153 + 227923133 227923173 41 TTCACTGCGCAGGCGCCGAGCGGCCGAGGCGCCGCGGTCGG TTCACTGCGCAGGCGCCGAGCGGCCGAGGGGCCGCGGTCGG < 41bp 1 0.687674727380135 1 0.675351500511169 experiment 0.62465054523973 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNAP47 ENSG00000143740 CDS Human protein_coding chr1:227923153 chr1:227923162 nonsynonymous SNV 0.002 1 30 hm5C_associated_SNPs_26816 0 0 1 0 1 SNAP47 chr1:227923200 5'GT 227923200 Upstream 39bp
chr20 42343776 42343776 1 + G A LUAD 42343775 + 42343755 42343795 41 GACTTGGTTTTGGTTTCAGCCGACAACTGCCCCTTCAAACT GACTTGGTTTTGGTTTCAGCCAACAACTGCCCCTTCAAACT < 41bp 1 0.518135231505884 1 0.609786212444305 experiment 0.963729536988233 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42343775 chr20:42343776 synonymous SNV . 0 22 hm5C_associated_SNPs_26817 0 0 1 0 1 MYBL2 chr20:42343774 3'AG 42343774 Downstream 3bp
chr17 60768374 60768374 1 + G T LUAD 60768363 + 60768343 60768383 41 TGAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGC TGAACTACTCCAACTGGGGGCCCCCGGGCTTTGGCCCCAGC < 41bp 1 0.0361290043161495 1 0.177093863487244 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768363 chr17:60768374 nonsynonymous SNV 0.965 1 32 hm5C_associated_SNPs_26818 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 65bp
chr17 60768374 60768374 1 + G T LUAD 60768364 + 60768344 60768384 41 GAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGCA GAACTACTCCAACTGGGGGCCCCCGGGCTTTGGCCCCAGCA < 41bp 1 0.112804283973375 1 0.496063739061356 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768364 chr17:60768374 nonsynonymous SNV 0.965 1 31 hm5C_associated_SNPs_26819 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 65bp
chr17 60768374 60768374 1 + G T LUAD 60768365 + 60768345 60768385 41 AACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGCAT AACTACTCCAACTGGGGGCCCCCGGGCTTTGGCCCCAGCAT < 41bp 1 0.224622034779493 1 0.6790531873703 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768365 chr17:60768374 nonsynonymous SNV 0.965 1 30 hm5C_associated_SNPs_26820 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 65bp
chr17 60768374 60768374 1 + G T LUAD 60768377 + 60768357 60768397 41 TGGGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAA TGGGGGCCCCCGGGCTTTGGCCCCAGCATGCTGAGCCACAA < 41bp 1 0.506747860649441 1 0.507440388202667 experiment 0.986504278701119 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768377 chr17:60768374 nonsynonymous SNV 0.965 1 18 hm5C_associated_SNPs_26821 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 65bp
chr17 60768374 60768374 1 + G T LUAD 60768378 + 60768358 60768398 41 GGGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAAC GGGGGCCCCCGGGCTTTGGCCCCAGCATGCTGAGCCACAAC < 41bp 1 0.167658980956924 1 0.341413199901581 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768378 chr17:60768374 nonsynonymous SNV 0.965 1 17 hm5C_associated_SNPs_26822 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 65bp
chr17 60768374 60768374 1 + G T LUAD 60768379 + 60768359 60768399 41 GGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACA GGGGCCCCCGGGCTTTGGCCCCAGCATGCTGAGCCACAACA < 41bp 1 0.0821036040785534 1 0.360452651977539 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768379 chr17:60768374 nonsynonymous SNV 0.965 1 16 hm5C_associated_SNPs_26823 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 65bp
chr17 60768374 60768374 1 + G T LUAD 60768380 + 60768360 60768400 41 GGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACAG GGGCCCCCGGGCTTTGGCCCCAGCATGCTGAGCCACAACAG < 41bp 1 0.654996603874609 1 0.692513823509216 experiment 0.690006792250782 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768380 chr17:60768374 nonsynonymous SNV 0.965 1 15 hm5C_associated_SNPs_26824 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 65bp
chr6 5369389 5369389 1 + G T LUAD 5369391 + 5369371 5369411 41 ATTTTCCACCAGCTGGAGGCCGTGCGGCTCTTCTCCAAGCA ATTTTCCACCAGCTGGAGTCCGTGCGGCTCTTCTCCAAGCA < 41bp 1 0.274829033792046 1 0.523481488227844 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FARS2 ENSG00000145982 CDS Human protein_coding chr6:5369391 chr6:5369389 nonsynonymous SNV 0.973 1 19 hm5C_associated_SNPs_26827 0 0 1 0 1 FARS2 chr6:5369415 5'GT 5369415 Upstream 27bp
chr10 60037063 60037063 1 + G T LUAD 60037076 + 60037056 60037096 41 TACTGCCGTTGTTGGAGGTCCAAAAAGGTGAGGAAAGCAAT TACTGCCTTTGTTGGAGGTCCAAAAAGGTGAGGAAAGCAAT < 41bp 1 0.568678819150526 1 0.405042052268982 experiment 0.862642361698948 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CISD1 ENSG00000122873 CDS Human protein_coding chr10:60037076 chr10:60037063 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_26828 0 0 1 0 1 CISD1 chr10:60037082 5'GT 60037082 Upstream 20bp
chr1 248039253 248039253 1 + C A LUAD 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGAGTCTGCTCTTGACCGACGACCTGCGCAGTGTGCA < 41bp 1 0.657212902867436 1 0.504788756370544 experiment 0.685574194265128 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039253 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_26829 0 0 0 0 2 TRIM58 chr1:248039202 3'AG 248039202 Downstream 52bp
chr1 248039253 248039253 1 + C A LUAD 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGAGTCTGCTCTTGACCGACGACCTGCGCAGTGTGCA < 41bp 1 0.657212902867436 1 0.504788756370544 experiment 0.685574194265128 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039253 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_26829 0 0 0 0 2 TRIM58 chr1:248039339 5'GT 248039339 Upstream 87bp
chr5 454086 454086 1 + G T LUAD 454080 + 454060 454100 41 ATGTACCACCAAGCCCTGAGCACGCGGATGCAGGACCTCGC ATGTACCACCAAGCCCTGAGCACGCGTATGCAGGACCTCGC < 41bp 1 0.635339694115129 1 0.350184291601181 experiment 0.729320611769741 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC3 ENSG00000180104 CDS Human protein_coding chr5:454080 chr5:454086 synonymous SNV . 0 27 hm5C_associated_SNPs_26843 0 0 1 0 1 EXOC3 chr5:454166 5'GT 454166 Upstream 81bp
chr5 179149988 179149988 1 + G T LUAD 179149974 + 179149954 179149994 41 AAGAATAGTTGATGATTGGGCCAATGATGGATGGGGCCTGA AAGAATAGTTGATGATTGGGCCAATGATGGATGGTGCCTGA < 41bp 1 0.201332741229885 1 0.279732465744019 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179149974 chr5:179149988 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_26844 0 0 1 0 1 CANX chr5:179150020 5'GT 179150020 Upstream 33bp
chr17 27011938 27011938 1 + A T LUAD 27011928 + 27011908 27011948 41 ACAGACTTCCTTCGACTGCCCCATTTTACCAAACGGCGAAC ACAGACTTCCTTCGACTGCCCCATTTTACCTAACGGCGAAC < 41bp 1 0.06226969988899 1 0.0436770021915436 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27011928 chr17:27011938 stopgain 0.998 1 31 hm5C_associated_SNPs_26845 0 0 1 0 1 SUPT6H chr17:27011862 3'AG 27011862 Downstream 77bp
chr17 27011938 27011938 1 + A T LUAD 27011948 + 27011928 27011968 41 CCATTTTACCAAACGGCGAACTGCATGGAGAGAGGAAGAGC CCATTTTACCTAACGGCGAACTGCATGGAGAGAGGAAGAGC < 41bp 1 0.593448285372857 1 0.747698426246643 experiment 0.813103429254286 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27011948 chr17:27011938 stopgain 0.998 1 11 hm5C_associated_SNPs_26846 0 0 1 0 1 SUPT6H chr17:27011862 3'AG 27011862 Downstream 77bp
chr15 44085915 44085915 1 + G T LUAD 44085898 + 44085878 44085918 41 CTCCCAGTGCCCCATCATCTCTACCCCCAGGGACTCGGAGA CTCCCAGTGCCCCATCATCTCTACCCCCAGGGACTCGTAGA < 41bp 1 0.262958039711397 1 0.0479691326618195 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SERF2 ENSG00000140264 CDS Human protein_coding chr15:44085898 chr15:44085915 stopgain 1.000 0 38 hm5C_associated_SNPs_26847 0 0 1 0 2 SERF2 chr15:44085885 3'AG 44085885 Downstream 31bp
chr15 44085915 44085915 1 + G T LUAD 44085898 + 44085878 44085918 41 CTCCCAGTGCCCCATCATCTCTACCCCCAGGGACTCGGAGA CTCCCAGTGCCCCATCATCTCTACCCCCAGGGACTCGTAGA < 41bp 1 0.262958039711397 1 0.0479691326618195 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SERF2 ENSG00000140264 CDS Human protein_coding chr15:44085898 chr15:44085915 stopgain 1.000 0 38 hm5C_associated_SNPs_26847 0 0 1 0 2 SERF2 chr15:44085908 3'AG 44085908 Downstream 8bp
chr15 44085915 44085915 1 + G T LUAD 44085902 + 44085882 44085922 41 CAGTGCCCCATCATCTCTACCCCCAGGGACTCGGAGATCAT CAGTGCCCCATCATCTCTACCCCCAGGGACTCGTAGATCAT < 41bp 1 0.325062350921199 1 0.11250913143158 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SERF2 ENSG00000140264 CDS Human protein_coding chr15:44085902 chr15:44085915 stopgain 1.000 0 34 hm5C_associated_SNPs_26848 0 0 1 0 2 SERF2 chr15:44085885 3'AG 44085885 Downstream 31bp
chr15 44085915 44085915 1 + G T LUAD 44085902 + 44085882 44085922 41 CAGTGCCCCATCATCTCTACCCCCAGGGACTCGGAGATCAT CAGTGCCCCATCATCTCTACCCCCAGGGACTCGTAGATCAT < 41bp 1 0.325062350921199 1 0.11250913143158 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SERF2 ENSG00000140264 CDS Human protein_coding chr15:44085902 chr15:44085915 stopgain 1.000 0 34 hm5C_associated_SNPs_26848 0 0 1 0 2 SERF2 chr15:44085908 3'AG 44085908 Downstream 8bp
chr6 24423246 24423246 1 + G T LUAD 24423252 + 24423232 24423272 41 TGCTTTCATTCCTTGGACGACAGCTAGAAGCTCCATTGCCT TGCTTTCATTCCTTTGACGACAGCTAGAAGCTCCATTGCCT < 41bp 1 0.49032169671949 1 0.0672610402107239 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRS2 ENSG00000124532 CDS Human protein_coding chr6:24423252 chr6:24423246 stopgain 0.995 1 15 hm5C_associated_SNPs_26849 0 0 1 0 2 MRS2 chr6:24423165 3'AG 24423165 Downstream 82bp
chr6 24423246 24423246 1 + G T LUAD 24423252 + 24423232 24423272 41 TGCTTTCATTCCTTGGACGACAGCTAGAAGCTCCATTGCCT TGCTTTCATTCCTTTGACGACAGCTAGAAGCTCCATTGCCT < 41bp 1 0.49032169671949 1 0.0672610402107239 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRS2 ENSG00000124532 CDS Human protein_coding chr6:24423252 chr6:24423246 stopgain 0.995 1 15 hm5C_associated_SNPs_26849 0 0 1 0 2 MRS2 chr6:24423278 5'GT 24423278 Upstream 33bp
chr10 72434397 72434397 1 + G T LUAD 72434407 + 72434387 72434427 41 TCTCCCACGTGGTGTCTGGCCCAGCAGCAGCCTCTGCAGGG TCTCCCACGTTGTGTCTGGCCCAGCAGCAGCCTCTGCAGGG < 41bp 1 0.184028427737739 1 0.203401267528534 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72434407 chr10:72434397 synonymous SNV . 0 11 hm5C_associated_SNPs_26850 0 0 0 0 1 ADAMTS14 chr10:72434312 3'AG 72434312 Downstream 86bp
chr10 72434397 72434397 1 + G T LUAD 72434411 + 72434391 72434431 41 CCACGTGGTGTCTGGCCCAGCAGCAGCCTCTGCAGGGAGCA CCACGTTGTGTCTGGCCCAGCAGCAGCCTCTGCAGGGAGCA < 41bp 1 0.700717593859878 1 0.634424090385437 experiment 0.598564812280245 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72434411 chr10:72434397 synonymous SNV . 0 7 hm5C_associated_SNPs_26851 0 0 0 0 1 ADAMTS14 chr10:72434312 3'AG 72434312 Downstream 86bp
chr17 48696099 48696099 1 + G A LUAD 48696108 + 48696088 48696128 41 TTCGTGCTGACGGCCCAGTTCGTGCTAGTCAACGTGGTGAT TTCGTGCTGACAGCCCAGTTCGTGCTAGTCAACGTGGTGAT < 41bp 1 0.437542084689656 1 0.105683326721191 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48696108 chr17:48696099 synonymous SNV . 0 12 hm5C_associated_SNPs_26852 0 0 1 0 1 CACNA1G chr17:48696016 3'AG 48696016 Downstream 84bp
chr14 23778060 23778060 1 + G T LUAD 23778051 + 23778031 23778071 41 TTCACAGCTCTATACGGGGACGGGGCCCTGGAGGAGGCGCG TTCACAGCTCTATACGGGGACGGGGCCCTTGAGGAGGCGCG < 41bp 1 0.624308711841579 1 0.772989869117737 experiment 0.751382576316841 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCL2L2 ENSG00000129473 CDS Human protein_coding chr14:23778051 chr14:23778060 synonymous SNV . 0 30 hm5C_associated_SNPs_26860 0 0 1 0 1 BCL2L2 chr14:23778025 3'AG 23778025 Downstream 36bp
chr1 156351617 156351617 1 + G A LUAD 156351618 + 156351598 156351638 41 TCCACATCCAAAATGCAGCGCTGGCTGGAGGGGTTGTGGTG TCCACATCCAAAATGCAGCACTGGCTGGAGGGGTTGTGGTG < 41bp 1 0.415897225750751 1 0.0901186168193817 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHBG ENSG00000132677 CDS Human protein_coding chr1:156351618 chr1:156351617 synonymous SNV . 0 20 hm5C_associated_SNPs_26863 0 0 0 0 1 RHBG chr1:156351597 3'AG 156351597 Downstream 21bp
chr9 104307066 104307066 1 + G C LUAD 104307070 + 104307050 104307090 41 TAATCTGATAGTGGAGGAAGCAGTGCAGGAGCTGAACTCTT TAATCTGATAGTGGAGCAAGCAGTGCAGGAGCTGAACTCTT < 41bp 1 0.335014146813388 1 0.590889394283295 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF20 ENSG00000155827 CDS Human protein_coding chr9:104307070 chr9:104307066 nonsynonymous SNV 0.999 3 17 hm5C_associated_SNPs_26865 0 0 1 0 1 RNF20 chr9:104307049 3'AG 104307049 Downstream 18bp
chr7 79842052 79842052 1 + G A LUAD 79842035 + 79842015 79842055 41 ATTTTTTTCTATTACAGAACCGAATGCATGAAAGCATGAAA ATTTTTTTCTATTACAGAACCGAATGCATGAAAGCATAAAA < 41bp 1 0.179108118382929 1 0.194645375013351 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79842035 chr7:79842052 nonsynonymous SNV 0.998 3 38 hm5C_associated_SNPs_26866 0 0 0 0 1 GNAI1 chr7:79842032 3'AG 79842032 Downstream 21bp
chr7 73636006 73636006 1 + C G LUAD 73636001 + 73635981 73636021 41 TGGAGTATTACAACTGGGGGCGGTTCTCGAAGCCCCCAGAA TGGAGTATTACAACTGGGGGCGGTTGTCGAAGCCCCCAGAA < 41bp 1 0.278405795156804 1 0.217820405960083 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636001 chr7:73636006 nonsynonymous SNV 0.021 0 26 hm5C_associated_SNPs_26869 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 40bp
chr7 73636006 73636006 1 + C G LUAD 73636001 + 73635981 73636021 41 TGGAGTATTACAACTGGGGGCGGTTCTCGAAGCCCCCAGAA TGGAGTATTACAACTGGGGGCGGTTGTCGAAGCCCCCAGAA < 41bp 1 0.278405795156804 1 0.217820405960083 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636001 chr7:73636006 nonsynonymous SNV 0.021 0 26 hm5C_associated_SNPs_26869 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 17bp
chr7 73636006 73636006 1 + C G LUAD 73636013 + 73635993 73636033 41 ACTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAG ACTGGGGGCGGTTGTCGAAGCCCCCAGAAGGTGAGGCGAAG < 41bp 1 0.159701956996446 1 0.225163459777832 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636013 chr7:73636006 nonsynonymous SNV 0.021 0 14 hm5C_associated_SNPs_26870 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 40bp
chr7 73636006 73636006 1 + C G LUAD 73636013 + 73635993 73636033 41 ACTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAG ACTGGGGGCGGTTGTCGAAGCCCCCAGAAGGTGAGGCGAAG < 41bp 1 0.159701956996446 1 0.225163459777832 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636013 chr7:73636006 nonsynonymous SNV 0.021 0 14 hm5C_associated_SNPs_26870 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 17bp
chr7 73636006 73636006 1 + C G LUAD 73636014 + 73635994 73636034 41 CTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGG CTGGGGGCGGTTGTCGAAGCCCCCAGAAGGTGAGGCGAAGG < 41bp 1 0.510654408800234 1 0.277088284492493 experiment 0.978691182399532 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636014 chr7:73636006 nonsynonymous SNV 0.021 0 13 hm5C_associated_SNPs_26871 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 40bp
chr7 73636006 73636006 1 + C G LUAD 73636014 + 73635994 73636034 41 CTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGG CTGGGGGCGGTTGTCGAAGCCCCCAGAAGGTGAGGCGAAGG < 41bp 1 0.510654408800234 1 0.277088284492493 experiment 0.978691182399532 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636014 chr7:73636006 nonsynonymous SNV 0.021 0 13 hm5C_associated_SNPs_26871 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 17bp
chr7 73636006 73636006 1 + C G LUAD 73636015 + 73635995 73636035 41 TGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGA TGGGGGCGGTTGTCGAAGCCCCCAGAAGGTGAGGCGAAGGA < 41bp 1 0.254429826422502 1 0.262844771146774 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636015 chr7:73636006 nonsynonymous SNV 0.021 0 12 hm5C_associated_SNPs_26872 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 40bp
chr7 73636006 73636006 1 + C G LUAD 73636015 + 73635995 73636035 41 TGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGA TGGGGGCGGTTGTCGAAGCCCCCAGAAGGTGAGGCGAAGGA < 41bp 1 0.254429826422502 1 0.262844771146774 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636015 chr7:73636006 nonsynonymous SNV 0.021 0 12 hm5C_associated_SNPs_26872 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 17bp
chr7 73636006 73636006 1 + C G LUAD 73636016 + 73635996 73636036 41 GGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGAC GGGGGCGGTTGTCGAAGCCCCCAGAAGGTGAGGCGAAGGAC < 41bp 1 0.518321062691334 1 0.400747030973434 experiment 0.963357874617333 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636016 chr7:73636006 nonsynonymous SNV 0.021 0 11 hm5C_associated_SNPs_26873 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 40bp
chr7 73636006 73636006 1 + C G LUAD 73636016 + 73635996 73636036 41 GGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGAC GGGGGCGGTTGTCGAAGCCCCCAGAAGGTGAGGCGAAGGAC < 41bp 1 0.518321062691334 1 0.400747030973434 experiment 0.963357874617333 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636016 chr7:73636006 nonsynonymous SNV 0.021 0 11 hm5C_associated_SNPs_26873 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 17bp
chr7 73636006 73636006 1 + C G LUAD 73636017 + 73635997 73636037 41 GGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGACA GGGGCGGTTGTCGAAGCCCCCAGAAGGTGAGGCGAAGGACA < 41bp 1 0.674297213143472 1 0.793518602848053 experiment 0.651405573713055 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636017 chr7:73636006 nonsynonymous SNV 0.021 0 10 hm5C_associated_SNPs_26874 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 40bp
chr7 73636006 73636006 1 + C G LUAD 73636017 + 73635997 73636037 41 GGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGACA GGGGCGGTTGTCGAAGCCCCCAGAAGGTGAGGCGAAGGACA < 41bp 1 0.674297213143472 1 0.793518602848053 experiment 0.651405573713055 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636017 chr7:73636006 nonsynonymous SNV 0.021 0 10 hm5C_associated_SNPs_26874 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 17bp
chr2 211525369 211525369 1 + T C LUAD 211525357 + 211525337 211525377 41 ATTGGACCATCCCATAATTCCTGCTGACTATGTTGCAATTA ATTGGACCATCCCATAATTCCTGCTGACTATGCTGCAATTA < 41bp 1 0.301778374458492 1 0.0780095756053925 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211525357 chr2:211525369 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_26875 0 0 0 0 1 CPS1 chr2:211525379 5'GT 211525379 Upstream 11bp
chr20 9376236 9376236 1 + A G LUAD 9376240 + 9376220 9376260 41 CCAGCAAACATCTTAGAGGACGATAATGAAGAGGAGATCGA CCAGCAAACATCTTAGGGGACGATAATGAAGAGGAGATCGA < 41bp 1 0.233297620540494 1 0.170118242502213 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB4 ENSG00000101333 CDS Human protein_coding chr20:9376240 chr20:9376236 nonsynonymous SNV 0.976 0 17 hm5C_associated_SNPs_26876 0 0 0 0 2 PLCB4 chr20:9376170 3'AG 9376170 Downstream 67bp
chr20 9376236 9376236 1 + A G LUAD 9376240 + 9376220 9376260 41 CCAGCAAACATCTTAGAGGACGATAATGAAGAGGAGATCGA CCAGCAAACATCTTAGGGGACGATAATGAAGAGGAGATCGA < 41bp 1 0.233297620540494 1 0.170118242502213 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB4 ENSG00000101333 CDS Human protein_coding chr20:9376240 chr20:9376236 nonsynonymous SNV 0.976 0 17 hm5C_associated_SNPs_26876 0 0 0 0 2 PLCB4 chr20:9376265 5'GT 9376265 Upstream 30bp
chr19 39592142 39592142 1 + C A LUAD 39592152 + 39592132 39592172 41 CTACACCAACCCGCGAGGGCCTGTCCACATCATCACAGGAT CTACACCAACACGCGAGGGCCTGTCCACATCATCACAGGAT < 41bp 1 0.0786667020211188 1 0.1980339884758 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACP7 ENSG00000183760 CDS Human protein_coding chr19:39592152 chr19:39592142 nonsynonymous SNV 0.387 2 11 hm5C_associated_SNPs_26881 0 0 0 0 2 ACP7 chr19:39592106 3'AG 39592106 Downstream 37bp
chr19 39592142 39592142 1 + C A LUAD 39592152 + 39592132 39592172 41 CTACACCAACCCGCGAGGGCCTGTCCACATCATCACAGGAT CTACACCAACACGCGAGGGCCTGTCCACATCATCACAGGAT < 41bp 1 0.0786667020211188 1 0.1980339884758 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACP7 ENSG00000183760 CDS Human protein_coding chr19:39592152 chr19:39592142 nonsynonymous SNV 0.387 2 11 hm5C_associated_SNPs_26881 0 0 0 0 2 ACP7 chr19:39592177 5'GT 39592177 Upstream 36bp
chr11 76892595 76892595 1 + G T LUAD 76892615 + 76892595 76892635 41 GCCTGCCAGGCCAGGAGGGCCAGGCACCTAGTGGCTTTGAG TCCTGCCAGGCCAGGAGGGCCAGGCACCTAGTGGCTTTGAG < 41bp 1 0.258906928458949 1 0.542211592197418 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO7A ENSG00000137474 CDS Human protein_coding chr11:76892615 chr11:76892595 nonsynonymous SNV 0.973 2 1 hm5C_associated_SNPs_26882 0 0 1 0 1 MYO7A chr11:76892635 5'GT 76892635 Upstream 41bp
chrX 12838875 12838875 1 + A G LUAD 12838861 + 12838841 12838881 41 AAATAATGCCGCCTTTGAGGCTGTTGTCGTCACAAACACAA AAATAATGCCGCCTTTGAGGCTGTTGTCGTCACAGACACAA < 41bp 1 0.344119410703447 1 0.0828023850917816 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12838861 chrX:12838875 nonsynonymous SNV 0.807 1 35 hm5C_associated_SNPs_26883 0 0 1 0 1 PRPS2 chrX:12838922 5'GT 12838922 Upstream 48bp
chr7 130021575 130021575 1 + C T LUAD 130021565 + 130021545 130021585 41 GGTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGA GGTCAAGATCTTTCTGGAGTCCCACGGCATTAGCTATGAGA < 41bp 1 0.136910710376864 1 0.127978831529617 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021565 chr7:130021575 synonymous SNV . 0 31 hm5C_associated_SNPs_26887 0 0 0 0 1 CPA1 chr7:130021536 3'AG 130021536 Downstream 40bp
chr7 130021575 130021575 1 + C T LUAD 130021566 + 130021546 130021586 41 GTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGAC GTCAAGATCTTTCTGGAGTCCCACGGCATTAGCTATGAGAC < 41bp 1 0.319549204267606 1 0.543193399906158 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021566 chr7:130021575 synonymous SNV . 0 30 hm5C_associated_SNPs_26888 0 0 0 0 1 CPA1 chr7:130021536 3'AG 130021536 Downstream 40bp
chr7 130021575 130021575 1 + C T LUAD 130021567 + 130021547 130021587 41 TCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACC TCAAGATCTTTCTGGAGTCCCACGGCATTAGCTATGAGACC < 41bp 1 0.714707963369768 1 0.567907810211182 experiment 0.570584073260463 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021567 chr7:130021575 synonymous SNV . 0 29 hm5C_associated_SNPs_26889 0 0 0 0 1 CPA1 chr7:130021536 3'AG 130021536 Downstream 40bp
chr7 130021575 130021575 1 + C T LUAD 130021569 + 130021549 130021589 41 AAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACCAT AAGATCTTTCTGGAGTCCCACGGCATTAGCTATGAGACCAT < 41bp 1 0.786118773901403 1 0.761286735534668 experiment 0.427762452197194 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021569 chr7:130021575 synonymous SNV . 0 27 hm5C_associated_SNPs_26890 0 0 0 0 1 CPA1 chr7:130021536 3'AG 130021536 Downstream 40bp
chr7 130021575 130021575 1 + C T LUAD 130021572 + 130021552 130021592 41 ATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGAT ATCTTTCTGGAGTCCCACGGCATTAGCTATGAGACCATGAT < 41bp 1 0.181630860277668 1 0.275574862957001 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021572 chr7:130021575 synonymous SNV . 0 24 hm5C_associated_SNPs_26891 0 0 0 0 1 CPA1 chr7:130021536 3'AG 130021536 Downstream 40bp
chr7 130021575 130021575 1 + C T LUAD 130021578 + 130021558 130021598 41 CTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGAGGA CTGGAGTCCCACGGCATTAGCTATGAGACCATGATCGAGGA < 41bp 1 0.530240858180629 1 0.214291274547577 experiment 0.939518283638742 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021578 chr7:130021575 synonymous SNV . 0 18 hm5C_associated_SNPs_26892 0 0 0 0 1 CPA1 chr7:130021536 3'AG 130021536 Downstream 40bp
chr7 130021575 130021575 1 + C T LUAD 130021586 + 130021566 130021606 41 CCACGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGT CCACGGCATTAGCTATGAGACCATGATCGAGGACGTGCAGT < 41bp 1 0.1571571049147 1 0.0369171798229218 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021586 chr7:130021575 synonymous SNV . 0 10 hm5C_associated_SNPs_26893 0 0 0 0 1 CPA1 chr7:130021536 3'AG 130021536 Downstream 40bp
chr7 130021575 130021575 1 + C T LUAD 130021587 + 130021567 130021607 41 CACGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGTC CACGGCATTAGCTATGAGACCATGATCGAGGACGTGCAGTC < 41bp 1 0.694054659551088 1 0.205661237239838 experiment 0.611890680897824 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021587 chr7:130021575 synonymous SNV . 0 9 hm5C_associated_SNPs_26894 0 0 0 0 1 CPA1 chr7:130021536 3'AG 130021536 Downstream 40bp
chr2 220346372 220346372 1 + A T LUAD 220346365 + 220346345 220346385 41 CTCATTCATTCACAGGAGACCTACCGCAGAAGAGACCCTAG CTCATTCATTCACAGGAGACCTACCGCTGAAGAGACCCTAG < 41bp 1 0.0299356394784823 1 0.108028471469879 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220346365 chr2:220346372 synonymous SNV . 0 28 hm5C_associated_SNPs_26895 0 0 0 0 2 SPEG chr2:220346360 3'AG 220346360 Downstream 13bp
chr2 220346372 220346372 1 + A T LUAD 220346365 + 220346345 220346385 41 CTCATTCATTCACAGGAGACCTACCGCAGAAGAGACCCTAG CTCATTCATTCACAGGAGACCTACCGCTGAAGAGACCCTAG < 41bp 1 0.0299356394784823 1 0.108028471469879 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220346365 chr2:220346372 synonymous SNV . 0 28 hm5C_associated_SNPs_26895 0 0 0 0 2 SPEG chr2:220346402 5'GT 220346402 Upstream 31bp
chrX 129185893 129185893 1 + A T LUAD 129185891 + 129185871 129185911 41 ATCCTCCTGGGAGCTCAGATCAAGAAGGAGACGATCCGATG ATCCTCCTGGGAGCTCAGATCATGAAGGAGACGATCCGATG < 41bp 1 0.527379124883065 1 0.728589177131653 experiment 0.94524175023387 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129185891 chrX:129185893 nonsynonymous SNV 0.987 1 23 hm5C_associated_SNPs_26898 0 0 1 0 2 BCORL1 chrX:129185835 3'AG 129185835 Downstream 59bp
chrX 129185893 129185893 1 + A T LUAD 129185891 + 129185871 129185911 41 ATCCTCCTGGGAGCTCAGATCAAGAAGGAGACGATCCGATG ATCCTCCTGGGAGCTCAGATCATGAAGGAGACGATCCGATG < 41bp 1 0.527379124883065 1 0.728589177131653 experiment 0.94524175023387 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129185891 chrX:129185893 nonsynonymous SNV 0.987 1 23 hm5C_associated_SNPs_26898 0 0 1 0 2 BCORL1 chrX:129185991 5'GT 129185991 Upstream 99bp
chr9 78506251 78506251 1 + C T LUAD 78506235 + 78506215 78506255 41 GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAACTGTAT < 41bp 1 0.0429673173278457 1 0.033968061208725 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78506235 chr9:78506251 nonsynonymous SNV 0.949 2 37 hm5C_associated_SNPs_26902 0 0 0 1 1 PCSK5 chr9:78506289 5'GT 78506289 Upstream 39bp
chr2 232576109 232576109 1 + G T LUAD 232576092 + 232576072 232576112 41 GAAGGAAGTTGTGGAAGAGGCAGAAAATGGAAGAGACGCCC GAAGGAAGTTGTGGAAGAGGCAGAAAATGGAAGAGACTCCC < 41bp 1 0.791668994631512 1 0.747702717781067 experiment 0.416662010736976 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232576092 chr2:232576109 nonsynonymous SNV 0.995 0 38 hm5C_associated_SNPs_26903 0 0 1 0 2 PTMA chr2:232576058 3'AG 232576058 Downstream 52bp
chr2 232576109 232576109 1 + G T LUAD 232576092 + 232576072 232576112 41 GAAGGAAGTTGTGGAAGAGGCAGAAAATGGAAGAGACGCCC GAAGGAAGTTGTGGAAGAGGCAGAAAATGGAAGAGACTCCC < 41bp 1 0.791668994631512 1 0.747702717781067 experiment 0.416662010736976 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232576092 chr2:232576109 nonsynonymous SNV 0.995 0 38 hm5C_associated_SNPs_26903 0 0 1 0 2 PTMA chr2:232576129 5'GT 232576129 Upstream 21bp
chr2 232576109 232576109 1 + G T LUAD 232576110 + 232576090 232576130 41 GGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCTG GGCAGAAAATGGAAGAGACTCCCCTGCTAACGGGAATGCTG < 41bp 1 0.30139641999374 1 0.0378052592277527 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576110 chr2:232576109 nonsynonymous SNV 0.995 0 20 hm5C_associated_SNPs_26904 0 0 1 0 2 PTMA chr2:232576058 3'AG 232576058 Downstream 52bp
chr2 232576109 232576109 1 + G T LUAD 232576110 + 232576090 232576130 41 GGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCTG GGCAGAAAATGGAAGAGACTCCCCTGCTAACGGGAATGCTG < 41bp 1 0.30139641999374 1 0.0378052592277527 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576110 chr2:232576109 nonsynonymous SNV 0.995 0 20 hm5C_associated_SNPs_26904 0 0 1 0 2 PTMA chr2:232576129 5'GT 232576129 Upstream 21bp
chr2 232576109 232576109 1 + G T LUAD 232576128 + 232576108 232576148 41 CGCCCCTGCTAACGGGAATGCTGTGAGTGTCTGCTTTGCTC CTCCCCTGCTAACGGGAATGCTGTGAGTGTCTGCTTTGCTC < 41bp 1 0.541199534491061 1 0.197065621614456 experiment 0.917600931017879 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576128 chr2:232576109 nonsynonymous SNV 0.995 0 2 hm5C_associated_SNPs_26905 0 0 1 0 2 PTMA chr2:232576058 3'AG 232576058 Downstream 52bp
chr2 232576109 232576109 1 + G T LUAD 232576128 + 232576108 232576148 41 CGCCCCTGCTAACGGGAATGCTGTGAGTGTCTGCTTTGCTC CTCCCCTGCTAACGGGAATGCTGTGAGTGTCTGCTTTGCTC < 41bp 1 0.541199534491061 1 0.197065621614456 experiment 0.917600931017879 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576128 chr2:232576109 nonsynonymous SNV 0.995 0 2 hm5C_associated_SNPs_26905 0 0 1 0 2 PTMA chr2:232576129 5'GT 232576129 Upstream 21bp
chr12 95877025 95877025 1 + G T LUAD 95877015 + 95876995 95877035 41 AGATGGCGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAA AGATGGCGATGGAGATGGAGCAACTGGAAATAAGAAGAAAA < 41bp 1 0.327953889168768 1 0.335973143577576 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout METAP2 ENSG00000111142 CDS Human protein_coding chr12:95877015 chr12:95877025 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_26906 0 0 1 0 2 METAP2 chr12:95876991 3'AG 95876991 Downstream 35bp
chr12 95877025 95877025 1 + G T LUAD 95877015 + 95876995 95877035 41 AGATGGCGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAA AGATGGCGATGGAGATGGAGCAACTGGAAATAAGAAGAAAA < 41bp 1 0.327953889168768 1 0.335973143577576 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout METAP2 ENSG00000111142 CDS Human protein_coding chr12:95877015 chr12:95877025 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_26906 0 0 1 0 2 METAP2 chr12:95877056 5'GT 95877056 Upstream 32bp
chr8 32613930 32613930 1 + G T LUAD 32613925 + 32613905 32613945 41 CCTTTCTTATGTCCAGGAAACAGCGGAAAAAGCTGCATGAC CCTTTCTTATGTCCAGGAAACAGCGTAAAAAGCTGCATGAC < 41bp 1 0.552564342596423 1 0.76359486579895 experiment 0.894871314807154 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NRG1 ENSG00000157168 CDS Human protein_coding chr8:32613925 chr8:32613930 synonymous SNV . 0 26 hm5C_associated_SNPs_26907 0 0 0 0 1 NRG1 chr8:32613921 3'AG 32613921 Downstream 10bp
chr11 66625248 66625248 1 + C A LUAD 66625256 + 66625236 66625276 41 GCTGCTGCTGGCCAGTGGAGCGGCCGCCTGCCCGCTGCCCT GCTGCTGCTGGCAAGTGGAGCGGCCGCCTGCCCGCTGCCCT < 41bp 1 0.452833548301755 1 0.851622104644775 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRFN4 ENSG00000173621 CDS Human protein_coding chr11:66625256 chr11:66625248 synonymous SNV . 0 13 hm5C_associated_SNPs_26908 0 0 1 0 1 LRFN4 chr11:66625206 3'AG 66625206 Downstream 43bp
chr14 102478287 102478287 1 + A C LUAD 102478267 + 102478247 102478287 41 TGGCCTGATGATGGTGGGGCCCTCGGGAAGTGGGAAGAGCA TGGCCTGATGATGGTGGGGCCCTCGGGAAGTGGGAAGAGCC < 41bp 1 0.0274696006266708 1 0.150383681058884 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478267 chr14:102478287 nonsynonymous SNV 0.999 1 41 hm5C_associated_SNPs_26909 0 0 1 0 1 DYNC1H1 chr14:102478212 3'AG 102478212 Downstream 76bp
chr14 102478287 102478287 1 + A C LUAD 102478270 + 102478250 102478290 41 CCTGATGATGGTGGGGCCCTCGGGAAGTGGGAAGAGCATGG CCTGATGATGGTGGGGCCCTCGGGAAGTGGGAAGAGCCTGG < 41bp 1 0.748233146660491 1 0.804830431938171 experiment 0.503533706679018 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478270 chr14:102478287 nonsynonymous SNV 0.999 1 38 hm5C_associated_SNPs_26910 0 0 1 0 1 DYNC1H1 chr14:102478212 3'AG 102478212 Downstream 76bp
chr1 228526024 228526024 1 + G T LUAD 228526010 + 228525990 228526030 41 GCTGTCACCTGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCC GCTGTCACCTGAGTGGGGGGCCGCTGAGGCCCCTTAGTTCC < 41bp 1 0.051900655959123 1 0.45332133769989 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526010 chr1:228526024 stopgain 0.362 1 35 hm5C_associated_SNPs_26911 0 0 1 0 2 OBSCN chr1:228525991 3'AG 228525991 Downstream 34bp
chr1 228526024 228526024 1 + G T LUAD 228526010 + 228525990 228526030 41 GCTGTCACCTGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCC GCTGTCACCTGAGTGGGGGGCCGCTGAGGCCCCTTAGTTCC < 41bp 1 0.051900655959123 1 0.45332133769989 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526010 chr1:228526024 stopgain 0.362 1 35 hm5C_associated_SNPs_26911 0 0 1 0 2 OBSCN chr1:228526073 5'GT 228526073 Upstream 50bp
chr1 228526024 228526024 1 + G T LUAD 228526011 + 228525991 228526031 41 CTGTCACCTGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCC CTGTCACCTGAGTGGGGGGCCGCTGAGGCCCCTTAGTTCCC < 41bp 1 0.0658993180275881 1 0.610836029052734 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526011 chr1:228526024 stopgain 0.362 1 34 hm5C_associated_SNPs_26912 0 0 1 0 2 OBSCN chr1:228525991 3'AG 228525991 Downstream 34bp
chr1 228526024 228526024 1 + G T LUAD 228526011 + 228525991 228526031 41 CTGTCACCTGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCC CTGTCACCTGAGTGGGGGGCCGCTGAGGCCCCTTAGTTCCC < 41bp 1 0.0658993180275881 1 0.610836029052734 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526011 chr1:228526024 stopgain 0.362 1 34 hm5C_associated_SNPs_26912 0 0 1 0 2 OBSCN chr1:228526073 5'GT 228526073 Upstream 50bp
chr1 228526024 228526024 1 + G T LUAD 228526019 + 228525999 228526039 41 TGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGG TGAGTGGGGGGCCGCTGAGGCCCCTTAGTTCCCTGGGGAGG < 41bp 1 0.0570518984668709 1 0.178568124771118 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526019 chr1:228526024 stopgain 0.362 1 26 hm5C_associated_SNPs_26913 0 0 1 0 2 OBSCN chr1:228525991 3'AG 228525991 Downstream 34bp
chr1 228526024 228526024 1 + G T LUAD 228526019 + 228525999 228526039 41 TGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGG TGAGTGGGGGGCCGCTGAGGCCCCTTAGTTCCCTGGGGAGG < 41bp 1 0.0570518984668709 1 0.178568124771118 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526019 chr1:228526024 stopgain 0.362 1 26 hm5C_associated_SNPs_26913 0 0 1 0 2 OBSCN chr1:228526073 5'GT 228526073 Upstream 50bp
chr1 228526024 228526024 1 + G T LUAD 228526020 + 228526000 228526040 41 GAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGC GAGTGGGGGGCCGCTGAGGCCCCTTAGTTCCCTGGGGAGGC < 41bp 1 0.0548786093690592 1 0.109577029943466 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526020 chr1:228526024 stopgain 0.362 1 25 hm5C_associated_SNPs_26914 0 0 1 0 2 OBSCN chr1:228525991 3'AG 228525991 Downstream 34bp
chr1 228526024 228526024 1 + G T LUAD 228526020 + 228526000 228526040 41 GAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGC GAGTGGGGGGCCGCTGAGGCCCCTTAGTTCCCTGGGGAGGC < 41bp 1 0.0548786093690592 1 0.109577029943466 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526020 chr1:228526024 stopgain 0.362 1 25 hm5C_associated_SNPs_26914 0 0 1 0 2 OBSCN chr1:228526073 5'GT 228526073 Upstream 50bp
chr1 228526024 228526024 1 + G T LUAD 228526021 + 228526001 228526041 41 AGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGCT AGTGGGGGGCCGCTGAGGCCCCTTAGTTCCCTGGGGAGGCT < 41bp 1 0.0467527186070574 1 0.132697582244873 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526021 chr1:228526024 stopgain 0.362 1 24 hm5C_associated_SNPs_26915 0 0 1 0 2 OBSCN chr1:228525991 3'AG 228525991 Downstream 34bp
chr1 228526024 228526024 1 + G T LUAD 228526021 + 228526001 228526041 41 AGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGCT AGTGGGGGGCCGCTGAGGCCCCTTAGTTCCCTGGGGAGGCT < 41bp 1 0.0467527186070574 1 0.132697582244873 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526021 chr1:228526024 stopgain 0.362 1 24 hm5C_associated_SNPs_26915 0 0 1 0 2 OBSCN chr1:228526073 5'GT 228526073 Upstream 50bp
chr1 228526024 228526024 1 + G T LUAD 228526022 + 228526002 228526042 41 GTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGCTG GTGGGGGGCCGCTGAGGCCCCTTAGTTCCCTGGGGAGGCTG < 41bp 1 0.10348957647696 1 0.0921967625617981 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526022 chr1:228526024 stopgain 0.362 1 23 hm5C_associated_SNPs_26916 0 0 1 0 2 OBSCN chr1:228525991 3'AG 228525991 Downstream 34bp
chr1 228526024 228526024 1 + G T LUAD 228526022 + 228526002 228526042 41 GTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGCTG GTGGGGGGCCGCTGAGGCCCCTTAGTTCCCTGGGGAGGCTG < 41bp 1 0.10348957647696 1 0.0921967625617981 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526022 chr1:228526024 stopgain 0.362 1 23 hm5C_associated_SNPs_26916 0 0 1 0 2 OBSCN chr1:228526073 5'GT 228526073 Upstream 50bp
chr19 6374306 6374306 1 + C G LUAD 6374323 + 6374303 6374343 41 CCCCGGCCAGACCCTGCTCTCCTCCGTGCACGTGCTGGACC CCCGGGCCAGACCCTGCTCTCCTCCGTGCACGTGCTGGACC < 41bp 1 0.220207046916753 1 0.260754644870758 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALKBH7 ENSG00000125652 CDS Human protein_coding chr19:6374323 chr19:6374306 synonymous SNV . 0 4 hm5C_associated_SNPs_26917 0 0 1 0 2 ALKBH7 chr19:6374214 3'AG 6374214 Downstream 93bp
chr19 6374306 6374306 1 + C G LUAD 6374323 + 6374303 6374343 41 CCCCGGCCAGACCCTGCTCTCCTCCGTGCACGTGCTGGACC CCCGGGCCAGACCCTGCTCTCCTCCGTGCACGTGCTGGACC < 41bp 1 0.220207046916753 1 0.260754644870758 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALKBH7 ENSG00000125652 CDS Human protein_coding chr19:6374323 chr19:6374306 synonymous SNV . 0 4 hm5C_associated_SNPs_26917 0 0 1 0 2 ALKBH7 chr19:6374387 5'GT 6374387 Upstream 82bp
chr2 32673983 32673983 1 + A C LUAD 32673982 + 32673962 32674002 41 GTCAGATGAAATTGATTTATCAGATGTCCTTTCAGGTAGTG GTCAGATGAAATTGATTTATCCGATGTCCTTTCAGGTAGTG < 41bp 1 0.062067376833789 1 0.195328921079636 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673982 chr2:32673983 synonymous SNV . 0 22 hm5C_associated_SNPs_26920 0 0 1 0 1 BIRC6 chr2:32673996 5'GT 32673996 Upstream 14bp
chr2 32673983 32673983 1 + A C LUAD 32673989 + 32673969 32674009 41 GAAATTGATTTATCAGATGTCCTTTCAGGTAGTGATTTCTT GAAATTGATTTATCCGATGTCCTTTCAGGTAGTGATTTCTT < 41bp 1 0.00561837743463024 1 0.0218217074871063 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673989 chr2:32673983 synonymous SNV . 0 15 hm5C_associated_SNPs_26921 0 0 1 0 1 BIRC6 chr2:32673996 5'GT 32673996 Upstream 14bp
chr2 32673983 32673983 1 + A C LUAD 32673990 + 32673970 32674010 41 AAATTGATTTATCAGATGTCCTTTCAGGTAGTGATTTCTTT AAATTGATTTATCCGATGTCCTTTCAGGTAGTGATTTCTTT < 41bp 1 0.00801060042504494 1 0.0855082273483276 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673990 chr2:32673983 synonymous SNV . 0 14 hm5C_associated_SNPs_26922 0 0 1 0 1 BIRC6 chr2:32673996 5'GT 32673996 Upstream 14bp
chr2 32673983 32673983 1 + A C LUAD 32673994 + 32673974 32674014 41 TGATTTATCAGATGTCCTTTCAGGTAGTGATTTCTTTTATT TGATTTATCCGATGTCCTTTCAGGTAGTGATTTCTTTTATT < 41bp 1 0.180167271372585 1 0.181774944067001 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673994 chr2:32673983 synonymous SNV . 0 10 hm5C_associated_SNPs_26923 0 0 1 0 1 BIRC6 chr2:32673996 5'GT 32673996 Upstream 14bp
chr3 51673485 51673485 1 + G T LUAD 51673466 + 51673446 51673486 41 CCCTGATGTGCTGTATGAAGCCCTTCAGAAGGAGAGCTTGG CCCTGATGTGCTGTATGAAGCCCTTCAGAAGGAGAGCTTTG < 41bp 1 0.211397944806992 1 0.114360451698303 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51673466 chr3:51673485 nonsynonymous SNV 0.950 3 40 hm5C_associated_SNPs_26924 0 0 1 0 1 RAD54L2 chr3:51673435 3'AG 51673435 Downstream 51bp
chr12 64173835 64173835 1 + G C LUAD 64173833 + 64173813 64173853 41 TACCACGTCTTCTTCGGGCGCCGCCGCCAGGCGCCGGCCGG TACCACGTCTTCTTCGGGCGCCCCCGCCAGGCGCCGGCCGG < 41bp 1 0.336719157007447 1 0.0329951345920563 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control TMEM5 ENSG00000118600 CDS Human protein_coding chr12:64173833 chr12:64173835 nonsynonymous SNV 0.882 2 23 hm5C_associated_SNPs_26925 0 0 1 0 1 TMEM5 chr12:64173909 5'GT 64173909 Upstream 75bp
chr16 57485061 57485061 1 + G T LUAD 57485048 + 57485028 57485068 41 GAAGCAGCAGCCTCCCAACTCATTTTCTCAGCAGCATTCTG GAAGCAGCAGCCTCCCAACTCATTTTCTCAGCATCATTCTG < 41bp 1 0.12703681767484 1 0.0459785461425781 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57485048 chr16:57485061 nonsynonymous SNV 0.999 0 34 hm5C_associated_SNPs_26926 0 0 1 0 1 COQ9 chr16:57485120 5'GT 57485120 Upstream 60bp
chr1 163310200 163310200 1 + A G LUAD 163310211 + 163310191 163310231 41 ATATTTCAGAGAAAACCAAGCGTTTGGTAAACATCTTTTCT ATATTTCAGGGAAAACCAAGCGTTTGGTAAACATCTTTTCT < 41bp 1 0.072307581970671 1 0.0905514657497406 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUF2 ENSG00000143228 CDS Human protein_coding chr1:163310211 chr1:163310200 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_26928 0 0 1 0 2 NUF2 chr1:163310154 3'AG 163310154 Downstream 47bp
chr1 163310200 163310200 1 + A G LUAD 163310211 + 163310191 163310231 41 ATATTTCAGAGAAAACCAAGCGTTTGGTAAACATCTTTTCT ATATTTCAGGGAAAACCAAGCGTTTGGTAAACATCTTTTCT < 41bp 1 0.072307581970671 1 0.0905514657497406 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUF2 ENSG00000143228 CDS Human protein_coding chr1:163310211 chr1:163310200 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_26928 0 0 1 0 2 NUF2 chr1:163310216 5'GT 163310216 Upstream 17bp
chr9 35389884 35389884 1 + G T LUAD 35389874 + 35389854 35389894 41 ACCTCCAGAGGAACAAGGGCCCAGCATTCGGAACCTGGATT ACCTCCAGAGGAACAAGGGCCCAGCATTCGTAACCTGGATT < 41bp 1 0.0659123875979797 1 0.14843624830246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UNC13B ENSG00000198722 CDS Human protein_coding chr9:35389874 chr9:35389884 synonymous SNV . 0 31 hm5C_associated_SNPs_26929 0 0 1 0 2 UNC13B chr9:35389843 3'AG 35389843 Downstream 42bp
chr9 35389884 35389884 1 + G T LUAD 35389874 + 35389854 35389894 41 ACCTCCAGAGGAACAAGGGCCCAGCATTCGGAACCTGGATT ACCTCCAGAGGAACAAGGGCCCAGCATTCGTAACCTGGATT < 41bp 1 0.0659123875979797 1 0.14843624830246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UNC13B ENSG00000198722 CDS Human protein_coding chr9:35389874 chr9:35389884 synonymous SNV . 0 31 hm5C_associated_SNPs_26929 0 0 1 0 2 UNC13B chr9:35389970 5'GT 35389970 Upstream 87bp
chr19 1461077 1461077 1 + C T LUAD 1461096 + 1461076 1461116 41 ACATCAACAGCAAGAAGGTGCTGAGGGAGGCGGGCAGCGTG ATATCAACAGCAAGAAGGTGCTGAGGGAGGCGGGCAGCGTG < 41bp 1 0.234591497612898 1 0.35846009850502 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APC2 ENSG00000115266 CDS Human protein_coding chr19:1461096 chr19:1461077 synonymous SNV . 0 2 hm5C_associated_SNPs_26941 0 0 0 0 2 APC2 chr19:1461036 3'AG 1461036 Downstream 42bp
chr19 1461077 1461077 1 + C T LUAD 1461096 + 1461076 1461116 41 ACATCAACAGCAAGAAGGTGCTGAGGGAGGCGGGCAGCGTG ATATCAACAGCAAGAAGGTGCTGAGGGAGGCGGGCAGCGTG < 41bp 1 0.234591497612898 1 0.35846009850502 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APC2 ENSG00000115266 CDS Human protein_coding chr19:1461096 chr19:1461077 synonymous SNV . 0 2 hm5C_associated_SNPs_26941 0 0 0 0 2 APC2 chr19:1461152 5'GT 1461152 Upstream 76bp
chr22 32217522 32217522 1 + G C LUAD 32217507 + 32217487 32217527 41 GGGCCATCCGGAGAAGCCATCCAGATCCACCACCAGACCCG GGGCCATCCGGAGAAGCCATCCAGATCCACCACCACACCCG < 41bp 1 0.575306382498349 1 0.662481188774109 experiment 0.849387235003301 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32217507 chr22:32217522 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_26942 0 0 1 0 1 DEPDC5 chr22:32217488 3'AG 32217488 Downstream 35bp
chr1 110134755 110134755 1 + A T LUAD 110134762 + 110134742 110134782 41 GAGATCTATACTCACTTCACCTGTGCCACAGACACGAAGAA GAGATCTATACTCTCTTCACCTGTGCCACAGACACGAAGAA < 41bp 1 0.201613176366988 1 0.463473975658417 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GNAI3 ENSG00000065135 CDS Human protein_coding chr1:110134762 chr1:110134755 nonsynonymous SNV 0.988 5 14 hm5C_associated_SNPs_26943 0 0 1 0 1 GNAI3 chr1:110134665 3'AG 110134665 Downstream 91bp
chr11 46403644 46403644 1 + G T LUAD 46403637 + 46403617 46403657 41 CGAGGCTTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCT CGAGGCTTCCTCCTCCTCACCCTCCTCTCCCTGCTGGCGCT < 41bp 1 0.0450546319791579 1 0.0429928302764893 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403637 chr11:46403644 nonsynonymous SNV 0.008 0 28 hm5C_associated_SNPs_26944 0 0 1 0 2 MDK chr11:46403607 3'AG 46403607 Downstream 38bp
chr11 46403644 46403644 1 + G T LUAD 46403637 + 46403617 46403657 41 CGAGGCTTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCT CGAGGCTTCCTCCTCCTCACCCTCCTCTCCCTGCTGGCGCT < 41bp 1 0.0450546319791579 1 0.0429928302764893 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403637 chr11:46403644 nonsynonymous SNV 0.008 0 28 hm5C_associated_SNPs_26944 0 0 1 0 2 MDK chr11:46403683 5'GT 46403683 Upstream 40bp
chr11 46403644 46403644 1 + G T LUAD 46403638 + 46403618 46403658 41 GAGGCTTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCTC GAGGCTTCCTCCTCCTCACCCTCCTCTCCCTGCTGGCGCTC < 41bp 1 0.499097322178543 1 0.246678441762924 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403638 chr11:46403644 nonsynonymous SNV 0.008 0 27 hm5C_associated_SNPs_26945 0 0 1 0 2 MDK chr11:46403607 3'AG 46403607 Downstream 38bp
chr11 46403644 46403644 1 + G T LUAD 46403638 + 46403618 46403658 41 GAGGCTTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCTC GAGGCTTCCTCCTCCTCACCCTCCTCTCCCTGCTGGCGCTC < 41bp 1 0.499097322178543 1 0.246678441762924 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403638 chr11:46403644 nonsynonymous SNV 0.008 0 27 hm5C_associated_SNPs_26945 0 0 1 0 2 MDK chr11:46403683 5'GT 46403683 Upstream 40bp
chr11 46403644 46403644 1 + G T LUAD 46403643 + 46403623 46403663 41 TTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCTCACCTC TTCCTCCTCCTCACCCTCCTCTCCCTGCTGGCGCTCACCTC < 41bp 1 0.513551201536859 1 0.887201905250549 experiment 0.972897596926282 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403643 chr11:46403644 nonsynonymous SNV 0.008 0 22 hm5C_associated_SNPs_26946 0 0 1 0 2 MDK chr11:46403607 3'AG 46403607 Downstream 38bp
chr11 46403644 46403644 1 + G T LUAD 46403643 + 46403623 46403663 41 TTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCTCACCTC TTCCTCCTCCTCACCCTCCTCTCCCTGCTGGCGCTCACCTC < 41bp 1 0.513551201536859 1 0.887201905250549 experiment 0.972897596926282 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403643 chr11:46403644 nonsynonymous SNV 0.008 0 22 hm5C_associated_SNPs_26946 0 0 1 0 2 MDK chr11:46403683 5'GT 46403683 Upstream 40bp
chr17 45748079 45748079 1 + T A LUAD 45748073 + 45748053 45748093 41 CTATGTGCATTTCAGGCTTTCTCCAGTCTGGCTGAAGCTGC CTATGTGCATTTCAGGCTTTCTCCAGACTGGCTGAAGCTGC < 41bp 1 0.726848448830014 1 0.916037678718567 experiment 0.546303102339973 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45748073 chr17:45748079 nonsynonymous SNV 0.963 4 27 hm5C_associated_SNPs_26947 0 0 1 0 1 KPNB1 chr17:45748068 3'AG 45748068 Downstream 12bp
chr15 25213180 25213180 1 + G T LUAD 25213171 + 25213151 25213191 41 GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA GGCATTCTTAGCTGAGACACCAAGAGGTGTTTAAAGCCATA < 41bp 1 0.779553295776114 1 0.453191459178925 experiment 0.440893408447772 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNURF ENSG00000214265;ENSG00000273173 CDS Human other chr15:25213171 chr15:25213180 nonsynonymous SNV 0.998 2 30 hm5C_associated_SNPs_26948 0 0 1 2 1 SNHG14 chr15:25213229 5'GT 25213229 Upstream 50bp
chr2 46607448 46607448 1 + G T LUAD 46607459 + 46607439 46607479 41 GCCCCATCTGCCCCGAGGAGCGGCTCTTGGCGGAGAACCCA GCCCCATCTTCCCCGAGGAGCGGCTCTTGGCGGAGAACCCA < 41bp 1 0.403543106520757 1 0.372088521718979 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46607459 chr2:46607448 nonsynonymous SNV 0.997 3 10 hm5C_associated_SNPs_26949 0 0 1 0 1 EPAS1 chr2:46607366 3'AG 46607366 Downstream 83bp
chr16 11133682 11133682 1 + C T LUAD 11133688 + 11133668 11133708 41 AGACCACCTACAACCACCCGCTAGCTGAAAGACTCATCAGG AGACCACCTACAACTACCCGCTAGCTGAAAGACTCATCAGG < 41bp 1 0.10903385075541 1 0.238498270511627 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11133688 chr16:11133682 nonsynonymous SNV 0.871 1 15 hm5C_associated_SNPs_26950 0 0 1 0 2 CLEC16A chr16:11133611 3'AG 11133611 Downstream 72bp
chr16 11133682 11133682 1 + C T LUAD 11133688 + 11133668 11133708 41 AGACCACCTACAACCACCCGCTAGCTGAAAGACTCATCAGG AGACCACCTACAACTACCCGCTAGCTGAAAGACTCATCAGG < 41bp 1 0.10903385075541 1 0.238498270511627 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11133688 chr16:11133682 nonsynonymous SNV 0.871 1 15 hm5C_associated_SNPs_26950 0 0 1 0 2 CLEC16A chr16:11133733 5'GT 11133733 Upstream 52bp
chr2 27448030 27448030 1 + G T LUAD 27448037 + 27448017 27448057 41 TTGAGCTGACCGAGGATCGACGGGCCTTTGCTGCCAGAATG TTGAGCTGACCGATGATCGACGGGCCTTTGCTGCCAGAATG < 41bp 1 0.443304840309377 1 0.5816251039505 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27448037 chr2:27448030 nonsynonymous SNV 0.111 5 14 hm5C_associated_SNPs_26952 0 0 1 0 1 CAD chr2:27448111 5'GT 27448111 Upstream 82bp
chr2 27448030 27448030 1 + G T LUAD 27448041 + 27448021 27448061 41 GCTGACCGAGGATCGACGGGCCTTTGCTGCCAGAATGGCAG GCTGACCGATGATCGACGGGCCTTTGCTGCCAGAATGGCAG < 41bp 1 0.0129828518496619 1 0.106659084558487 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27448041 chr2:27448030 nonsynonymous SNV 0.111 5 10 hm5C_associated_SNPs_26953 0 0 1 0 1 CAD chr2:27448111 5'GT 27448111 Upstream 82bp
chr2 27448030 27448030 1 + G T LUAD 27448047 + 27448027 27448067 41 CGAGGATCGACGGGCCTTTGCTGCCAGAATGGCAGAGATCG CGATGATCGACGGGCCTTTGCTGCCAGAATGGCAGAGATCG < 41bp 1 0.33301586126769 1 0.039919376373291 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27448047 chr2:27448030 nonsynonymous SNV 0.111 5 4 hm5C_associated_SNPs_26954 0 0 1 0 1 CAD chr2:27448111 5'GT 27448111 Upstream 82bp
chr9 133577570 133577570 1 + A T LUAD 133577577 + 133577557 133577597 41 CTGGTGAAACGGCAGAAGACCCACTTTCATGATTTGCCATG CTGGTGAAACGGCTGAAGACCCACTTTCATGATTTGCCATG < 41bp 1 0.327776907245198 1 0.0542184412479401 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133577577 chr9:133577570 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_26955 0 0 1 0 2 EXOSC2 chr9:133577521 3'AG 133577521 Downstream 50bp
chr9 133577570 133577570 1 + A T LUAD 133577577 + 133577557 133577597 41 CTGGTGAAACGGCAGAAGACCCACTTTCATGATTTGCCATG CTGGTGAAACGGCTGAAGACCCACTTTCATGATTTGCCATG < 41bp 1 0.327776907245198 1 0.0542184412479401 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133577577 chr9:133577570 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_26955 0 0 1 0 2 EXOSC2 chr9:133577530 3'AG 133577530 Downstream 41bp
chr4 107268722 107268722 1 + G T LUAD 107268727 + 107268707 107268747 41 CTAAGAAGAAGATTTGGGAGCAGATCCAGCCTGATCTTCAC CTAAGAAGAAGATTTTGGAGCAGATCCAGCCTGATCTTCAC < 41bp 1 0.413400445557277 1 0.174658983945847 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AIMP1 ENSG00000164022 CDS Human protein_coding chr4:107268727 chr4:107268722 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_26956 0 0 1 0 1 AIMP1 chr4:107268683 3'AG 107268683 Downstream 40bp
chr10 72326434 72326434 1 + G T LUAD 72326417 + 72326397 72326437 41 AGCGGGGAGGACCAGCCCTTCTCCAGGCTGCGCTACCGGTG AGCGGGGAGGACCAGCCCTTCTCCAGGCTGCGCTACCTGTG < 41bp 1 0.777918250060612 1 0.90781557559967 experiment 0.444163499878777 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72326417 chr10:72326434 nonsynonymous SNV 0.846 4 38 hm5C_associated_SNPs_26958 0 0 0 0 1 PALD1 chr10:72326337 3'AG 72326337 Downstream 98bp
chr3 169985727 169985727 1 + G T LUAD 169985728 + 169985708 169985748 41 ATCTACCGTAGAGGTGCACGCCGCTGGAGAAAGCTTTATTG ATCTACCGTAGAGGTGCACTCCGCTGGAGAAAGCTTTATTG < 41bp 1 0.528244991658253 1 0.591309249401093 experiment 0.943510016683494 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:169985728 chr3:169985727 nonsynonymous SNV 0.985 4 20 hm5C_associated_SNPs_26960 0 0 1 0 1 PRKCI chr3:169985703 3'AG 169985703 Downstream 25bp
chr2 219538628 219538628 1 + G T LUAD 219538635 + 219538615 219538655 41 CAGACTATGCTGAGGGAGAGCTCTTTCAGATCCTAGAAGAT CAGACTATGCTGATGGAGAGCTCTTTCAGATCCTAGAAGAT < 41bp 1 0.0845793586839994 1 0.0925861895084381 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STK36 ENSG00000163482 CDS Human protein_coding chr2:219538635 chr2:219538628 nonsynonymous SNV 0.998 1 14 hm5C_associated_SNPs_26965 0 0 0 0 2 STK36 chr2:219538602 3'AG 219538602 Downstream 27bp
chr2 219538628 219538628 1 + G T LUAD 219538635 + 219538615 219538655 41 CAGACTATGCTGAGGGAGAGCTCTTTCAGATCCTAGAAGAT CAGACTATGCTGATGGAGAGCTCTTTCAGATCCTAGAAGAT < 41bp 1 0.0845793586839994 1 0.0925861895084381 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STK36 ENSG00000163482 CDS Human protein_coding chr2:219538635 chr2:219538628 nonsynonymous SNV 0.998 1 14 hm5C_associated_SNPs_26965 0 0 0 0 2 STK36 chr2:219538679 5'GT 219538679 Upstream 52bp
chr2 32958931 32958931 1 + G T LUAD 32958943 + 32958923 32958963 41 CTACATCTGTATTGGAACGCCTGAAGATTTTCTATTGCTGT CTACATCTTTATTGGAACGCCTGAAGATTTTCTATTGCTGT < 41bp 1 0.497115064889489 1 0.461005836725235 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32958943 chr2:32958931 nonsynonymous SNV 0.731 0 9 hm5C_associated_SNPs_26966 0 0 0 0 2 TTC27 chr2:32958895 3'AG 32958895 Downstream 37bp
chr2 32958931 32958931 1 + G T LUAD 32958943 + 32958923 32958963 41 CTACATCTGTATTGGAACGCCTGAAGATTTTCTATTGCTGT CTACATCTTTATTGGAACGCCTGAAGATTTTCTATTGCTGT < 41bp 1 0.497115064889489 1 0.461005836725235 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32958943 chr2:32958931 nonsynonymous SNV 0.731 0 9 hm5C_associated_SNPs_26966 0 0 0 0 2 TTC27 chr2:32958990 5'GT 32958990 Upstream 60bp
chr14 69704367 69704367 1 + G T LUAD 69704365 + 69704345 69704385 41 ACCACAACTCCCACGATGTGCTGCTGCTCTGCACCTCCTGC ACCACAACTCCCACGATGTGCTTCTGCTCTGCACCTCCTGC < 41bp 1 0.21529457356145 1 0.0327105224132538 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EXD2 ENSG00000081177 CDS Human protein_coding chr14:69704365 chr14:69704367 synonymous SNV . 0 23 hm5C_associated_SNPs_26970 0 0 1 0 1 EXD2 chr14:69704292 3'AG 69704292 Downstream 76bp
chr3 53880624 53880624 1 + C T LUAD 53880614 + 53880594 53880634 41 GATCCCGCGCAGTGGCCCGGCGATGTCGCTCGTGCTGCTAA GATCCCGCGCAGTGGCCCGGCGATGTCGCTTGTGCTGCTAA < 41bp 1 0.617081785739095 1 0.445230931043625 experiment 0.76583642852181 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IL17RB ENSG00000056736 CDS Human protein_coding chr3:53880614 chr3:53880624 synonymous SNV . 0 31 hm5C_associated_SNPs_26977 0 0 1 0 1 IL17RB chr3:53880675 5'GT 53880675 Upstream 52bp
chr19 11145656 11145656 1 + G T LUAD 11145668 + 11145648 11145688 41 TCATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGAC TCATGGAGTAGGACGAGCTCCCCTCGTGGATCATCAAGGAC < 41bp 1 0.0721970144833732 1 0.0903445184230804 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145668 chr19:11145656 stopgain 0.995 1 9 hm5C_associated_SNPs_26979 0 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 67bp
chr19 11145656 11145656 1 + G T LUAD 11145669 + 11145649 11145689 41 CATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACG CATGGAGTAGGACGAGCTCCCCTCGTGGATCATCAAGGACG < 41bp 1 0.192915567862767 1 0.174806654453278 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145669 chr19:11145656 stopgain 0.995 1 8 hm5C_associated_SNPs_26980 0 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 67bp
chr19 11145656 11145656 1 + G T LUAD 11145672 + 11145652 11145692 41 GGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACGACG GGAGTAGGACGAGCTCCCCTCGTGGATCATCAAGGACGACG < 41bp 1 0.55159672696812 1 0.612375319004059 experiment 0.89680654606376 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145672 chr19:11145656 stopgain 0.995 1 5 hm5C_associated_SNPs_26981 0 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 67bp
chr19 11145655 11145655 1 + G T LUAD 11145668 + 11145648 11145688 41 TCATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGAC TCATGGATGAGGACGAGCTCCCCTCGTGGATCATCAAGGAC < 41bp 1 0.0772295644053792 1 0.0706871747970581 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145668 chr19:11145655 nonsynonymous SNV 0.996 4 8 hm5C_associated_SNPs_26982 0 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 66bp
chr19 11145655 11145655 1 + G T LUAD 11145669 + 11145649 11145689 41 CATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACG CATGGATGAGGACGAGCTCCCCTCGTGGATCATCAAGGACG < 41bp 1 0.178742711583674 1 0.10011750459671 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145669 chr19:11145655 nonsynonymous SNV 0.996 4 7 hm5C_associated_SNPs_26983 0 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 66bp
chr19 11145655 11145655 1 + G T LUAD 11145672 + 11145652 11145692 41 GGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACGACG GGATGAGGACGAGCTCCCCTCGTGGATCATCAAGGACGACG < 41bp 1 0.589374658344933 1 0.453469425439835 experiment 0.821250683310135 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145672 chr19:11145655 nonsynonymous SNV 0.996 4 4 hm5C_associated_SNPs_26984 0 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 66bp
chr4 3184081 3184081 1 + G C LUAD 3184095 + 3184075 3184115 41 TTATAGGTGTTGGAGATGTTCATTCTTGTCCTGCAGCAGTG TTATAGCTGTTGGAGATGTTCATTCTTGTCCTGCAGCAGTG < 41bp 1 0.0636055249846866 1 0.0918485522270203 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3184095 chr4:3184081 nonsynonymous SNV 0.919 4 7 hm5C_associated_SNPs_26986 0 0 1 0 1 HTT chr4:3184081 3'AG 3184081 Downstream 1bp
chr1 163310197 163310197 1 + C T LUAD 163310211 + 163310191 163310231 41 ATATTTCAGAGAAAACCAAGCGTTTGGTAAACATCTTTTCT ATATTTTAGAGAAAACCAAGCGTTTGGTAAACATCTTTTCT < 41bp 1 0.0556064990130887 1 0.0537252724170685 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUF2 ENSG00000143228 CDS Human protein_coding chr1:163310211 chr1:163310197 stopgain 1.000 2 7 hm5C_associated_SNPs_26987 0 0 1 0 2 NUF2 chr1:163310154 3'AG 163310154 Downstream 44bp
chr1 163310197 163310197 1 + C T LUAD 163310211 + 163310191 163310231 41 ATATTTCAGAGAAAACCAAGCGTTTGGTAAACATCTTTTCT ATATTTTAGAGAAAACCAAGCGTTTGGTAAACATCTTTTCT < 41bp 1 0.0556064990130887 1 0.0537252724170685 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUF2 ENSG00000143228 CDS Human protein_coding chr1:163310211 chr1:163310197 stopgain 1.000 2 7 hm5C_associated_SNPs_26987 0 0 1 0 2 NUF2 chr1:163310216 5'GT 163310216 Upstream 20bp
chr1 70700421 70700421 1 + G T LUAD 70700412 + 70700392 70700432 41 CACTGGCTGCTTTGGGGGCTCCTACTCTTGATCCTGCCCTT CACTGGCTGCTTTGGGGGCTCCTACTCTTTATCCTGCCCTT < 41bp 1 0.289033506374179 1 0.10213178396225 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70700412 chr1:70700421 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_26988 0 0 1 0 2 SRSF11 chr1:70700379 3'AG 70700379 Downstream 43bp
chr1 70700421 70700421 1 + G T LUAD 70700412 + 70700392 70700432 41 CACTGGCTGCTTTGGGGGCTCCTACTCTTGATCCTGCCCTT CACTGGCTGCTTTGGGGGCTCCTACTCTTTATCCTGCCCTT < 41bp 1 0.289033506374179 1 0.10213178396225 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70700412 chr1:70700421 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_26988 0 0 1 0 2 SRSF11 chr1:70700471 5'GT 70700471 Upstream 51bp
chr10 71712696 71712696 1 + C A LUAD 71712688 + 71712668 71712708 41 CCTAAAGGGGATAAGGGAGACCAAGGAGCGCCTGGATTAGA CCTAAAGGGGATAAGGGAGACCAAGGAGAGCCTGGATTAGA < 41bp 1 0.199616532733269 1 0.244180589914322 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71712688 chr10:71712696 nonsynonymous SNV 0.999 4 29 hm5C_associated_SNPs_26989 0 0 0 0 2 COL13A1 chr10:71712638 3'AG 71712638 Downstream 59bp
chr10 71712696 71712696 1 + C A LUAD 71712688 + 71712668 71712708 41 CCTAAAGGGGATAAGGGAGACCAAGGAGCGCCTGGATTAGA CCTAAAGGGGATAAGGGAGACCAAGGAGAGCCTGGATTAGA < 41bp 1 0.199616532733269 1 0.244180589914322 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71712688 chr10:71712696 nonsynonymous SNV 0.999 4 29 hm5C_associated_SNPs_26989 0 0 0 0 2 COL13A1 chr10:71712724 5'GT 71712724 Upstream 29bp
chr14 68042651 68042651 1 + C T LUAD 68042632 + 68042612 68042652 41 GACTATGAGGCTGGAGGAACCAGACGGTTGCTTTCCTCCCA GACTATGAGGCTGGAGGAACCAGACGGTTGCTTTCCTCCTA < 41bp 1 0.644865592978251 1 0.789763450622559 experiment 0.710268814043499 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68042632 chr14:68042651 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_26995 0 0 0 0 1 PLEKHH1 chr14:68042722 5'GT 68042722 Upstream 72bp
chr10 7842009 7842009 1 + A T LUAD 7841992 + 7841972 7842012 41 TGTTTTTGTCAATTCTAGGTCTGTCATCTCCTATAAGACAG TGTTTTTGTCAATTCTAGGTCTGTCATCTCCTATAAGTCAG < 41bp 1 0.161480296010834 1 0.0302459001541138 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7841992 chr10:7842009 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_26997 0 0 1 0 2 ATP5C1 chr10:7841990 3'AG 7841990 Downstream 20bp
chr10 7842009 7842009 1 + A T LUAD 7841992 + 7841972 7842012 41 TGTTTTTGTCAATTCTAGGTCTGTCATCTCCTATAAGACAG TGTTTTTGTCAATTCTAGGTCTGTCATCTCCTATAAGTCAG < 41bp 1 0.161480296010834 1 0.0302459001541138 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7841992 chr10:7842009 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_26997 0 0 1 0 2 ATP5C1 chr10:7842054 5'GT 7842054 Upstream 46bp
chr10 7842009 7842009 1 + A T LUAD 7841996 + 7841976 7842016 41 TTTGTCAATTCTAGGTCTGTCATCTCCTATAAGACAGAAGA TTTGTCAATTCTAGGTCTGTCATCTCCTATAAGTCAGAAGA < 41bp 1 0.135889940977562 1 0.145016342401505 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7841996 chr10:7842009 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_26998 0 0 1 0 2 ATP5C1 chr10:7841990 3'AG 7841990 Downstream 20bp
chr10 7842009 7842009 1 + A T LUAD 7841996 + 7841976 7842016 41 TTTGTCAATTCTAGGTCTGTCATCTCCTATAAGACAGAAGA TTTGTCAATTCTAGGTCTGTCATCTCCTATAAGTCAGAAGA < 41bp 1 0.135889940977562 1 0.145016342401505 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7841996 chr10:7842009 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_26998 0 0 1 0 2 ATP5C1 chr10:7842054 5'GT 7842054 Upstream 46bp
chr10 7842009 7842009 1 + A T LUAD 7841999 + 7841979 7842019 41 GTCAATTCTAGGTCTGTCATCTCCTATAAGACAGAAGAAAA GTCAATTCTAGGTCTGTCATCTCCTATAAGTCAGAAGAAAA < 41bp 1 0.404283974889063 1 0.242030799388885 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7841999 chr10:7842009 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_26999 0 0 1 0 2 ATP5C1 chr10:7841990 3'AG 7841990 Downstream 20bp
chr10 7842009 7842009 1 + A T LUAD 7841999 + 7841979 7842019 41 GTCAATTCTAGGTCTGTCATCTCCTATAAGACAGAAGAAAA GTCAATTCTAGGTCTGTCATCTCCTATAAGTCAGAAGAAAA < 41bp 1 0.404283974889063 1 0.242030799388885 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7841999 chr10:7842009 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_26999 0 0 1 0 2 ATP5C1 chr10:7842054 5'GT 7842054 Upstream 46bp
chr10 7842009 7842009 1 + A T LUAD 7842001 + 7841981 7842021 41 CAATTCTAGGTCTGTCATCTCCTATAAGACAGAAGAAAAGC CAATTCTAGGTCTGTCATCTCCTATAAGTCAGAAGAAAAGC < 41bp 1 0.0577589198417755 1 0.21217542886734 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7842001 chr10:7842009 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_27000 0 0 1 0 2 ATP5C1 chr10:7841990 3'AG 7841990 Downstream 20bp
chr10 7842009 7842009 1 + A T LUAD 7842001 + 7841981 7842021 41 CAATTCTAGGTCTGTCATCTCCTATAAGACAGAAGAAAAGC CAATTCTAGGTCTGTCATCTCCTATAAGTCAGAAGAAAAGC < 41bp 1 0.0577589198417755 1 0.21217542886734 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7842001 chr10:7842009 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_27000 0 0 1 0 2 ATP5C1 chr10:7842054 5'GT 7842054 Upstream 46bp
chr10 7842009 7842009 1 + A T LUAD 7842002 + 7841982 7842022 41 AATTCTAGGTCTGTCATCTCCTATAAGACAGAAGAAAAGCC AATTCTAGGTCTGTCATCTCCTATAAGTCAGAAGAAAAGCC < 41bp 1 0.457246477619073 1 0.561216175556183 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7842002 chr10:7842009 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_27001 0 0 1 0 2 ATP5C1 chr10:7841990 3'AG 7841990 Downstream 20bp
chr10 7842009 7842009 1 + A T LUAD 7842002 + 7841982 7842022 41 AATTCTAGGTCTGTCATCTCCTATAAGACAGAAGAAAAGCC AATTCTAGGTCTGTCATCTCCTATAAGTCAGAAGAAAAGCC < 41bp 1 0.457246477619073 1 0.561216175556183 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7842002 chr10:7842009 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_27001 0 0 1 0 2 ATP5C1 chr10:7842054 5'GT 7842054 Upstream 46bp
chr20 55088422 55088422 1 + G T LUAD 55088403 + 55088383 55088423 41 TTCCAGGAGGATGATGTCATCATGCTCAATGGCACCAAGGA TTCCAGGAGGATGATGTCATCATGCTCAATGGCACCAAGTA < 41bp 1 0.485559318324679 1 0.587419271469116 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55088403 chr20:55088422 stopgain 0.997 1 40 hm5C_associated_SNPs_27002 0 0 1 0 1 RTFDC1 chr20:55088484 5'GT 55088484 Upstream 63bp
chr20 55088422 55088422 1 + G T LUAD 55088433 + 55088413 55088453 41 GGCACCAAGGAGGATGTGGACGTGCTGAAGACAAGGATGGA GGCACCAAGTAGGATGTGGACGTGCTGAAGACAAGGATGGA < 41bp 1 0.406897338208394 1 0.301292061805725 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55088433 chr20:55088422 stopgain 0.997 1 10 hm5C_associated_SNPs_27003 0 0 1 0 1 RTFDC1 chr20:55088484 5'GT 55088484 Upstream 63bp
chrX 106884134 106884134 1 + C A LUAD 106884139 + 106884119 106884159 41 CCCCTCCATTTAGAGCCGGGCGCCAATCTCAGCCAAGCTTG CCCCTCCATTTAGAGACGGGCGCCAATCTCAGCCAAGCTTG < 41bp 1 0.622928035855964 1 0.217532992362976 experiment 0.754143928288072 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106884139 chrX:106884134 nonsynonymous SNV 0.999 4 16 hm5C_associated_SNPs_27004 0 0 1 0 2 PRPS1 chrX:106884132 3'AG 106884132 Downstream 3bp
chrX 106884134 106884134 1 + C A LUAD 106884139 + 106884119 106884159 41 CCCCTCCATTTAGAGCCGGGCGCCAATCTCAGCCAAGCTTG CCCCTCCATTTAGAGACGGGCGCCAATCTCAGCCAAGCTTG < 41bp 1 0.622928035855964 1 0.217532992362976 experiment 0.754143928288072 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106884139 chrX:106884134 nonsynonymous SNV 0.999 4 16 hm5C_associated_SNPs_27004 0 0 1 0 2 PRPS1 chrX:106884230 5'GT 106884230 Upstream 97bp
chr11 63585545 63585545 1 + G A LUAD 63585542 + 63585522 63585562 41 AAGAGCAATATCCTGGAGGCCTGGAGTGAAGGGGTGGCCCT AAGAGCAATATCCTGGAGGCCTGAAGTGAAGGGGTGGCCCT < 41bp 1 0.698215649192136 1 0.435242265462875 experiment 0.603568701615729 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C11orf84 ENSG00000168005 CDS Human protein_coding chr11:63585542 chr11:63585545 stopgain 0.995 1 24 hm5C_associated_SNPs_27012 0 0 1 0 1 C11orf84 chr11:63585606 5'GT 63585606 Upstream 62bp
chrX 70357597 70357597 1 + C T LUAD 70357578 + 70357558 70357598 41 TCTCCTTCTTCCCTCCAGGGCTATACTCCTTATGTTTCTCA TCTCCTTCTTCCCTCCAGGGCTATACTCCTTATGTTTCTTA < 41bp 1 0.105399212756113 1 0.0962234437465668 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70357578 chrX:70357597 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_27013 0 0 1 0 2 MED12 chrX:70357576 3'AG 70357576 Downstream 22bp
chrX 70357597 70357597 1 + C T LUAD 70357578 + 70357558 70357598 41 TCTCCTTCTTCCCTCCAGGGCTATACTCCTTATGTTTCTCA TCTCCTTCTTCCCTCCAGGGCTATACTCCTTATGTTTCTTA < 41bp 1 0.105399212756113 1 0.0962234437465668 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70357578 chrX:70357597 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_27013 0 0 1 0 2 MED12 chrX:70357630 5'GT 70357630 Upstream 34bp
chr7 142460344 142460344 1 + G C LUAD 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAACCCTC < 41bp 1 0.354021886459449 1 0.224656224250793 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460344 nonsynonymous SNV 0.269 1 37 hm5C_associated_SNPs_27014 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 63bp
chr7 142460344 142460344 1 + G C LUAD 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAACCCTC < 41bp 1 0.354021886459449 1 0.224656224250793 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460344 nonsynonymous SNV 0.269 1 37 hm5C_associated_SNPs_27014 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 75bp
chr7 142460344 142460344 1 + G C LUAD 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAACCCTCC < 41bp 1 0.569132298851223 1 0.731280207633972 experiment 0.861735402297555 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460344 nonsynonymous SNV 0.269 1 36 hm5C_associated_SNPs_27015 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 63bp
chr7 142460344 142460344 1 + G C LUAD 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAACCCTCC < 41bp 1 0.569132298851223 1 0.731280207633972 experiment 0.861735402297555 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460344 nonsynonymous SNV 0.269 1 36 hm5C_associated_SNPs_27015 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 75bp
chr7 142460344 142460344 1 + G C LUAD 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAACCCTCCTACC < 41bp 1 0.389192461242368 1 0.143460869789124 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460344 nonsynonymous SNV 0.269 1 32 hm5C_associated_SNPs_27016 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 63bp
chr7 142460344 142460344 1 + G C LUAD 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAACCCTCCTACC < 41bp 1 0.389192461242368 1 0.143460869789124 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460344 nonsynonymous SNV 0.269 1 32 hm5C_associated_SNPs_27016 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 75bp
chr7 142460344 142460344 1 + G C LUAD 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAGCCAGGCTAAGTGTGAACCCTCCTACCCTGGAAAGATTA < 41bp 1 0.0403289954323466 1 0.147828161716461 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460344 nonsynonymous SNV 0.269 1 20 hm5C_associated_SNPs_27017 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 63bp
chr7 142460344 142460344 1 + G C LUAD 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAGCCAGGCTAAGTGTGAACCCTCCTACCCTGGAAAGATTA < 41bp 1 0.0403289954323466 1 0.147828161716461 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460344 nonsynonymous SNV 0.269 1 20 hm5C_associated_SNPs_27017 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 75bp
chr7 142460344 142460344 1 + G C LUAD 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AGCCAGGCTAAGTGTGAACCCTCCTACCCTGGAAAGATTAC < 41bp 1 0.291750550475206 1 0.602536022663116 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460344 nonsynonymous SNV 0.269 1 19 hm5C_associated_SNPs_27018 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 63bp
chr7 142460344 142460344 1 + G C LUAD 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AGCCAGGCTAAGTGTGAACCCTCCTACCCTGGAAAGATTAC < 41bp 1 0.291750550475206 1 0.602536022663116 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460344 nonsynonymous SNV 0.269 1 19 hm5C_associated_SNPs_27018 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 75bp
chr7 142460344 142460344 1 + G C LUAD 142460348 + 142460328 142460368 41 CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA CCAGGCTAAGTGTGAACCCTCCTACCCTGGAAAGATTACCA < 41bp 1 0.021748768161217 1 0.305579006671906 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460348 chr7:142460344 nonsynonymous SNV 0.269 1 17 hm5C_associated_SNPs_27019 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 63bp
chr7 142460344 142460344 1 + G C LUAD 142460348 + 142460328 142460368 41 CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA CCAGGCTAAGTGTGAACCCTCCTACCCTGGAAAGATTACCA < 41bp 1 0.021748768161217 1 0.305579006671906 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460348 chr7:142460344 nonsynonymous SNV 0.269 1 17 hm5C_associated_SNPs_27019 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 75bp
chr7 142460344 142460344 1 + G C LUAD 142460349 + 142460329 142460369 41 CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG CAGGCTAAGTGTGAACCCTCCTACCCTGGAAAGATTACCAG < 41bp 1 0.191430482441547 1 0.229727685451508 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460349 chr7:142460344 nonsynonymous SNV 0.269 1 16 hm5C_associated_SNPs_27020 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 63bp
chr7 142460344 142460344 1 + G C LUAD 142460349 + 142460329 142460369 41 CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG CAGGCTAAGTGTGAACCCTCCTACCCTGGAAAGATTACCAG < 41bp 1 0.191430482441547 1 0.229727685451508 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460349 chr7:142460344 nonsynonymous SNV 0.269 1 16 hm5C_associated_SNPs_27020 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 75bp
chr7 142460344 142460344 1 + G C LUAD 142460352 + 142460332 142460372 41 GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA GCTAAGTGTGAACCCTCCTACCCTGGAAAGATTACCAGCAA < 41bp 1 0.322672363154556 1 0.334576785564423 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460352 chr7:142460344 nonsynonymous SNV 0.269 1 13 hm5C_associated_SNPs_27021 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 63bp
chr7 142460344 142460344 1 + G C LUAD 142460352 + 142460332 142460372 41 GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA GCTAAGTGTGAACCCTCCTACCCTGGAAAGATTACCAGCAA < 41bp 1 0.322672363154556 1 0.334576785564423 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460352 chr7:142460344 nonsynonymous SNV 0.269 1 13 hm5C_associated_SNPs_27021 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 75bp
chr7 142460344 142460344 1 + G C LUAD 142460353 + 142460333 142460373 41 CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC CTAAGTGTGAACCCTCCTACCCTGGAAAGATTACCAGCAAC < 41bp 1 0.280775433015155 1 0.483967661857605 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460353 chr7:142460344 nonsynonymous SNV 0.269 1 12 hm5C_associated_SNPs_27022 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 63bp
chr7 142460344 142460344 1 + G C LUAD 142460353 + 142460333 142460373 41 CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC CTAAGTGTGAACCCTCCTACCCTGGAAAGATTACCAGCAAC < 41bp 1 0.280775433015155 1 0.483967661857605 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460353 chr7:142460344 nonsynonymous SNV 0.269 1 12 hm5C_associated_SNPs_27022 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 75bp
chr7 142460344 142460344 1 + G C LUAD 142460354 + 142460334 142460374 41 TAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAACA TAAGTGTGAACCCTCCTACCCTGGAAAGATTACCAGCAACA < 41bp 1 0.755224881402781 1 0.331874549388885 experiment 0.489550237194438 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460354 chr7:142460344 nonsynonymous SNV 0.269 1 11 hm5C_associated_SNPs_27023 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 63bp
chr7 142460344 142460344 1 + G C LUAD 142460354 + 142460334 142460374 41 TAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAACA TAAGTGTGAACCCTCCTACCCTGGAAAGATTACCAGCAACA < 41bp 1 0.755224881402781 1 0.331874549388885 experiment 0.489550237194438 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460354 chr7:142460344 nonsynonymous SNV 0.269 1 11 hm5C_associated_SNPs_27023 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 75bp
chr19 41811594 41811594 1 + A C LUAD 41811578 + 41811558 41811598 41 GCTTTTTTCCCTCCACTTTCCAGCCGAGTTACAGCCAGCCA GCTTTTTTCCCTCCACTTTCCAGCCGAGTTACAGCCCGCCA < 41bp 1 0.321462326453372 1 0.717169046401978 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41811578 chr19:41811594 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_27026 0 0 1 0 2 HNRNPUL1 chr19:41811551 3'AG 41811551 Downstream 44bp
chr19 41811594 41811594 1 + A C LUAD 41811578 + 41811558 41811598 41 GCTTTTTTCCCTCCACTTTCCAGCCGAGTTACAGCCAGCCA GCTTTTTTCCCTCCACTTTCCAGCCGAGTTACAGCCCGCCA < 41bp 1 0.321462326453372 1 0.717169046401978 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41811578 chr19:41811594 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_27026 0 0 1 0 2 HNRNPUL1 chr19:41811581 3'AG 41811581 Downstream 14bp
chr3 184042135 184042135 1 + G A LUAD 184042134 + 184042114 184042154 41 AGAGATGGATGAAGCTGCTACGGTGAGAGAAAACCCACTAT AGAGATGGATGAAGCTGCTACAGTGAGAGAAAACCCACTAT < 41bp 1 0.301461502876904 1 0.333896815776825 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042134 chr3:184042135 synonymous SNV . 0 22 hm5C_associated_SNPs_27029 0 0 1 0 1 EIF4G1 chr3:184042135 5'GT 184042135 Upstream 1bp
chr12 57627019 57627019 1 + G T LUAD 57627007 + 57626987 57627027 41 AGGGGTGAAGGCTGTGGACCCCAAGACTGGCCGGGAGATCC AGGGGTGAAGGCTGTGGACCCCAAGACTGGCCTGGAGATCC < 41bp 1 0.349220406017921 1 0.407606184482574 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57627007 chr12:57627019 nonsynonymous SNV 0.993 1 33 hm5C_associated_SNPs_27030 0 0 1 0 1 SHMT2 chr12:57626963 3'AG 57626963 Downstream 57bp
chr19 19646177 19646177 1 + G A LUAD 19646174 + 19646154 19646194 41 ACCCACCATCTTCTACCCCACACGCTCGCTGGACCTGCTGC ACCCACCATCTTCTACCCCACACACTCGCTGGACCTGCTGC < 41bp 1 0.153952043906819 1 0.0359931886196136 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control YJEFN3 ENSG00000250067;ENSG00000258674 CDS Human other chr19:19646174 chr19:19646177 nonsynonymous SNV 0.042 4 24 hm5C_associated_SNPs_27031 0 0 1 0 2 YJEFN3 chr19:19646146 3'AG 19646146 Downstream 32bp
chr19 19646177 19646177 1 + G A LUAD 19646174 + 19646154 19646194 41 ACCCACCATCTTCTACCCCACACGCTCGCTGGACCTGCTGC ACCCACCATCTTCTACCCCACACACTCGCTGGACCTGCTGC < 41bp 1 0.153952043906819 1 0.0359931886196136 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control YJEFN3 ENSG00000250067;ENSG00000258674 CDS Human other chr19:19646174 chr19:19646177 nonsynonymous SNV 0.042 4 24 hm5C_associated_SNPs_27031 0 0 1 0 2 YJEFN3 chr19:19646259 5'GT 19646259 Upstream 83bp
chr11 61725728 61725728 1 + C A LUAD 61725725 + 61725705 61725745 41 GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGCAGTT GAGCTGGACCTCGTTGTGCCCGTATTCACGTTCCTGCAGTT < 41bp 1 0.185529781932694 1 0.270092189311981 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61725725 chr11:61725728 synonymous SNV . 0 24 hm5C_associated_SNPs_27032 0 0 0 1 1 BEST1 chr11:61725770 5'GT 61725770 Upstream 43bp
chr7 101188641 101188641 1 + C A LUAD 101188639 + 101188619 101188659 41 GGCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAG GGCTCCTGGGGCCTCCAGGGCCACGTGGGCTTCCTGGAGAG < 41bp 1 0.267964116464135 1 0.510019958019257 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188639 chr7:101188641 synonymous SNV . 0 23 hm5C_associated_SNPs_27034 0 0 0 0 1 COL26A1 chr7:101188619 3'AG 101188619 Downstream 23bp
chr7 101188641 101188641 1 + C A LUAD 101188640 + 101188620 101188660 41 GCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAGA GCTCCTGGGGCCTCCAGGGCCACGTGGGCTTCCTGGAGAGA < 41bp 1 0.592004979133978 1 0.35388770699501 experiment 0.815990041732043 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188640 chr7:101188641 synonymous SNV . 0 22 hm5C_associated_SNPs_27035 0 0 0 0 1 COL26A1 chr7:101188619 3'AG 101188619 Downstream 23bp
chr2 66691269 66691269 1 + C T LUAD 66691259 + 66691239 66691279 41 AGCCCTCTTGGAACAGAGATCATGATGACACGGCATCTACT AGCCCTCTTGGAACAGAGATCATGATGACATGGCATCTACT < 41bp 1 0.484993789762871 1 0.323663294315338 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66691259 chr2:66691269 nonsynonymous SNV 0.998 3 31 hm5C_associated_SNPs_27039 0 0 0 0 2 MEIS1 chr2:66691241 3'AG 66691241 Downstream 29bp
chr2 66691269 66691269 1 + C T LUAD 66691259 + 66691239 66691279 41 AGCCCTCTTGGAACAGAGATCATGATGACACGGCATCTACT AGCCCTCTTGGAACAGAGATCATGATGACATGGCATCTACT < 41bp 1 0.484993789762871 1 0.323663294315338 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66691259 chr2:66691269 nonsynonymous SNV 0.998 3 31 hm5C_associated_SNPs_27039 0 0 0 0 2 MEIS1 chr2:66691352 5'GT 66691352 Upstream 84bp
chr3 20019840 20019840 1 + C T LUAD 20019825 + 20019805 20019845 41 GCACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA GCACAGTCCTATGCAGATGACAATAGTTTATTATTTATGGA < 41bp 1 0.417062767012704 1 0.0817316472530365 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019825 chr3:20019840 synonymous SNV . 0 36 hm5C_associated_SNPs_27041 0 0 1 1 2 RAB5A chr3:20019802 3'AG 20019802 Downstream 39bp
chr3 20019840 20019840 1 + C T LUAD 20019825 + 20019805 20019845 41 GCACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA GCACAGTCCTATGCAGATGACAATAGTTTATTATTTATGGA < 41bp 1 0.417062767012704 1 0.0817316472530365 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019825 chr3:20019840 synonymous SNV . 0 36 hm5C_associated_SNPs_27041 0 0 1 1 2 RAB5A chr3:20019895 5'GT 20019895 Upstream 56bp
chr19 18975033 18975033 1 + G T LUAD 18975023 + 18975003 18975043 41 ATGTATGATGCCCGGGAGGCCATCATCCCAGGCTCCGTCTA ATGTATGATGCCCGGGAGGCCATCATCCCATGCTCCGTCTA < 41bp 1 0.470061761865101 1 0.0767872333526611 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18975023 chr19:18975033 nonsynonymous SNV 0.904 5 31 hm5C_associated_SNPs_27042 0 0 1 0 1 UPF1 chr19:18974979 3'AG 18974979 Downstream 55bp
chr5 908506 908506 1 + G T LUAD 908507 + 908487 908527 41 CGCCCGAAATGCCTGCAGGGCGGGCACCGAGCCATCAGATG CGCCCGAAATGCCTGCAGGTCGGGCACCGAGCCATCAGATG < 41bp 1 0.634980630017097 1 0.252672582864761 experiment 0.730038739965806 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908507 chr5:908506 nonsynonymous SNV 0.386 2 20 hm5C_associated_SNPs_27043 0 0 0 0 2 TRIP13 chr5:908470 3'AG 908470 Downstream 37bp
chr5 908506 908506 1 + G T LUAD 908507 + 908487 908527 41 CGCCCGAAATGCCTGCAGGGCGGGCACCGAGCCATCAGATG CGCCCGAAATGCCTGCAGGTCGGGCACCGAGCCATCAGATG < 41bp 1 0.634980630017097 1 0.252672582864761 experiment 0.730038739965806 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908507 chr5:908506 nonsynonymous SNV 0.386 2 20 hm5C_associated_SNPs_27043 0 0 0 0 2 TRIP13 chr5:908576 5'GT 908576 Upstream 71bp
chr1 164789369 164789369 1 + T G LUAD 164789352 + 164789332 164789372 41 TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACGCAA < 41bp 1 0.617810959774843 1 0.24872237443924 experiment 0.764378080450314 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789352 chr1:164789369 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_27045 0 0 0 0 2 PBX1 chr1:164789309 3'AG 164789309 Downstream 61bp
chr1 164789369 164789369 1 + T G LUAD 164789352 + 164789332 164789372 41 TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACGCAA < 41bp 1 0.617810959774843 1 0.24872237443924 experiment 0.764378080450314 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789352 chr1:164789369 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_27045 0 0 0 0 2 PBX1 chr1:164789421 5'GT 164789421 Upstream 53bp
chr5 33459940 33459940 1 + G A LUAD 33459929 + 33459909 33459949 41 CCTTTGAGGTGGAGAAGGAGCTGTTTGCCCTGAAACCCATG CCTTTGAGGTGGAGAAGGAGCTGTTTGCCCTAAAACCCATG < 41bp 1 0.484530907690159 1 0.108267515897751 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33459929 chr5:33459940 synonymous SNV . 0 32 hm5C_associated_SNPs_27046 0 0 1 0 1 TARS chr5:33459966 5'GT 33459966 Upstream 27bp
chr19 17424908 17424908 1 + C G LUAD 17424890 + 17424870 17424910 41 CAATTTTAGTCGATTTCACGCGGACTCCGTGTGCAAAGCCT CAATTTTAGTCGATTTCACGCGGACTCCGTGTGCAAAGGCT < 41bp 1 0.172772720291872 1 0.178418874740601 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDA1 ENSG00000130311 CDS Human protein_coding chr19:17424890 chr19:17424908 nonsynonymous SNV 0.998 1 39 hm5C_associated_SNPs_27047 0 0 1 0 2 DDA1 chr19:17424832 3'AG 17424832 Downstream 77bp
chr19 17424908 17424908 1 + C G LUAD 17424890 + 17424870 17424910 41 CAATTTTAGTCGATTTCACGCGGACTCCGTGTGCAAAGCCT CAATTTTAGTCGATTTCACGCGGACTCCGTGTGCAAAGGCT < 41bp 1 0.172772720291872 1 0.178418874740601 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDA1 ENSG00000130311 CDS Human protein_coding chr19:17424890 chr19:17424908 nonsynonymous SNV 0.998 1 39 hm5C_associated_SNPs_27047 0 0 1 0 2 DDA1 chr19:17424912 5'GT 17424912 Upstream 5bp
chr1 168014234 168014234 1 + C G LUAD 168014224 + 168014204 168014244 41 TTGATCGCTCTTGTGGGGTTCCAGAAGAATCTGCTTCATCT TTGATCGCTCTTGTGGGGTTCCAGAAGAATGTGCTTCATCT < 41bp 1 0.383648162194967 1 0.469597429037094 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DCAF6 ENSG00000143164 CDS Human protein_coding chr1:168014224 chr1:168014234 nonsynonymous SNV 0.085 1 31 hm5C_associated_SNPs_27048 0 0 1 0 1 DCAF6 chr1:168014138 3'AG 168014138 Downstream 97bp
chr4 183601753 183601753 1 + G T LUAD 183601733 + 183601713 183601753 41 TGTAGTGGCAACGGGCAGTACTCCAAGGGCCGCTGCCTGTG TGTAGTGGCAACGGGCAGTACTCCAAGGGCCGCTGCCTGTT < 41bp 1 0.775735606024107 1 0.990226030349731 experiment 0.448528787951786 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|28418038;GSE74771;RNA-BisSeq;293T;Control TENM3 ENSG00000218336 CDS Human protein_coding chr4:183601733 chr4:183601753 nonsynonymous SNV 0.989 3 41 hm5C_associated_SNPs_27049 0 0 1 0 1 TENM3 chr4:183601696 3'AG 183601696 Downstream 58bp
chr1 144014034 144014034 1 + G T LUAD 144014050 + 144014030 144014070 41 ACCTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGC ACCTTGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGC < 41bp 1 0.151996489479547 1 0.163876324892044 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014050 chr1:144014034 . . 0 5 hm5C_associated_SNPs_27051 0 0 1 0 1 FAM72C;NBPF20 chr1:144014093 5'GT 144014093 Upstream 60bp
chr1 144014034 144014034 1 + G T LUAD 144014052 + 144014032 144014072 41 CTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGCAG CTTGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGCAG < 41bp 1 0.275289314461071 1 0.420626223087311 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014052 chr1:144014034 . . 0 3 hm5C_associated_SNPs_27052 0 0 1 0 1 FAM72C;NBPF20 chr1:144014093 5'GT 144014093 Upstream 60bp
chr14 23239013 23239013 1 + C G LUAD 23239030 + 23239010 23239050 41 TGCCCGCTGCCTGATTTTTCCTCTCATCGTGACGGGCCAGC TGCGCGCTGCCTGATTTTTCCTCTCATCGTGACGGGCCAGC < 41bp 1 0.312826232619766 1 0.0326271653175354 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXA1L ENSG00000155463 CDS Human protein_coding chr14:23239030 chr14:23239013 synonymous SNV . 0 4 hm5C_associated_SNPs_27053 0 0 1 0 1 OXA1L chr14:23239000 3'AG 23239000 Downstream 14bp
chrX 49853406 49853406 1 + C T LUAD 49853386 + 49853366 49853406 41 CCTCTTTATCCCTAGCATGGCTGTTGGTGCTATAGCAGGTC CCTCTTTATCCCTAGCATGGCTGTTGGTGCTATAGCAGGTT < 41bp 1 0.141869147652523 1 0.0909989178180695 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLCN5 ENSG00000171365 CDS Human protein_coding chrX:49853386 chrX:49853406 stopgain 1.000 1 41 hm5C_associated_SNPs_27054 1 0 0 0 1 CLCN5 chrX:49853355 3'AG 49853355 Downstream 52bp
chrX 103431193 103431193 1 + G T LUAD 103431198 + 103431178 103431218 41 CTGAGATGGGTCTTCGGGAGCAACTTGATATTATTAAGATC CTGAGATGGGTCTTCTGGAGCAACTTGATATTATTAAGATC < 41bp 1 0.296363930183024 1 0.195012718439102 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM199X ENSG00000123575 CDS Human protein_coding chrX:103431198 chrX:103431193 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_27056 0 0 1 0 1 FAM199X chrX:103431141 3'AG 103431141 Downstream 53bp
chr19 58369964 58369964 1 + G C LUAD 58369959 + 58369939 58369979 41 TTCAGGTTGTTGGTGTGGATCAAAAGATGAGGAGGCACCTT TTCAGGTTGTTGGTGTGGATCAAAACATGAGGAGGCACCTT < 41bp 1 0.572757859610462 1 0.339991629123688 experiment 0.854484280779076 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF587 ENSG00000198466;ENSG00000268750 CDS Human other chr19:58369959 chr19:58369964 nonsynonymous SNV 0.006 0 26 hm5C_associated_SNPs_27058 0 0 0 0 1 ZNF587 chr19:58369944 3'AG 58369944 Downstream 21bp
chr16 68109352 68109352 1 + G A LUAD 68109341 + 68109321 68109361 41 CAGGCTCTCAGCCAAGACTTCAGAGCAGACAGGGGAGCCAG CAGGCTCTCAGCCAAGACTTCAGAGCAGACAAGGGAGCCAG < 41bp 1 0.634700033745708 1 0.668208718299866 experiment 0.730599932508584 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68109341 chr16:68109352 nonsynonymous SNV 0.030 0 32 hm5C_associated_SNPs_27068 0 0 0 0 2 DUS2 chr16:68109258 3'AG 68109258 Downstream 95bp
chr16 68109352 68109352 1 + G A LUAD 68109341 + 68109321 68109361 41 CAGGCTCTCAGCCAAGACTTCAGAGCAGACAGGGGAGCCAG CAGGCTCTCAGCCAAGACTTCAGAGCAGACAAGGGAGCCAG < 41bp 1 0.634700033745708 1 0.668208718299866 experiment 0.730599932508584 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68109341 chr16:68109352 nonsynonymous SNV 0.030 0 32 hm5C_associated_SNPs_27068 0 0 0 0 2 DUS2 chr16:68109407 5'GT 68109407 Upstream 56bp
chr19 19645921 19645921 1 + G T LUAD 19645936 + 19645916 19645956 41 CAGTGGGGCTGGTCTGTGCCCGGCACCTGCGGGTGTTTGTA CAGTGTGGCTGGTCTGTGCCCGGCACCTGCGGGTGTTTGTA < 41bp 1 0.746813272434551 1 0.511462986469269 experiment 0.506373455130898 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control YJEFN3 ENSG00000250067;ENSG00000258674 CDS Human other chr19:19645936 chr19:19645921 nonsynonymous SNV 0.993 4 6 hm5C_associated_SNPs_27069 0 0 1 0 1 YJEFN3 chr19:19645843 3'AG 19645843 Downstream 79bp
chr2 167056301 167056301 1 - C G LUAD 167056285 - 167056265 167056305 41 CCAGGATTGGCCGAATCCTACGTCTAGTCAAAGGAGCAAAG CCAGCATTGGCCGAATCCTACGTCTAGTCAAAGGAGCAAAG < 41bp 1 0.145730360174152 1 0.036712646484375 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SCN9A ENSG00000169432 CDS Human protein_coding chr2:167056285 chr2:167056301 nonsynonymous SNV 0.996 5 5 hm5C_associated_SNPs_27070 0 0 0 0 1 SCN9A chr2:167056374 3'AG 167056374 Downstream 74bp
chr11 34978962 34978962 1 + G T LUAD 34978967 + 34978947 34978987 41 AAAATATACGGCTAGGTTCACTAATTGGTTTGATAGTAGAA AAAATATACGGCTAGTTTCACTAATTGGTTTGATAGTAGAA < 41bp 1 0.0888236911440771 1 0.145784378051758 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PDHX ENSG00000110435 CDS Human protein_coding chr11:34978967 chr11:34978962 nonsynonymous SNV 0.980 4 16 hm5C_associated_SNPs_27071 0 0 1 0 1 PDHX chr11:34978931 3'AG 34978931 Downstream 32bp
chr10 96341154 96341154 1 + G A LUAD 96341151 + 96341131 96341171 41 AATATGAAGTGCCGTCTAATCAGGGAGTTAAAACGATTCAA AATATGAAGTGCCGTCTAATCAGAGAGTTAAAACGATTCAA < 41bp 1 0.775566024708108 1 0.77959942817688 experiment 0.448867950583785 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HELLS ENSG00000119969 CDS Human protein_coding chr10:96341151 chr10:96341154 synonymous SNV . 0 24 hm5C_associated_SNPs_27072 0 0 1 0 1 HELLS chr10:96341083 3'AG 96341083 Downstream 72bp
chr7 2686562 2686562 1 + T A LUAD 2686570 + 2686550 2686590 41 TTCTACTCCTTCTGGCTGTGCTGCCGGCGGCGCAAGAGCGA TTCTACTCCTTCAGGCTGTGCTGCCGGCGGCGCAAGAGCGA < 41bp 1 0.33599758110703 1 0.255390524864197 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686570 chr7:2686562 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_27073 0 0 1 0 2 TTYH3 chr7:2686487 3'AG 2686487 Downstream 76bp
chr7 2686562 2686562 1 + T A LUAD 2686570 + 2686550 2686590 41 TTCTACTCCTTCTGGCTGTGCTGCCGGCGGCGCAAGAGCGA TTCTACTCCTTCAGGCTGTGCTGCCGGCGGCGCAAGAGCGA < 41bp 1 0.33599758110703 1 0.255390524864197 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686570 chr7:2686562 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_27073 0 0 1 0 2 TTYH3 chr7:2686656 5'GT 2686656 Upstream 95bp
chr1 16778419 16778419 1 + A T LUAD 16778415 + 16778395 16778435 41 GCTGAGCCTGCTTCCCCCTCCCCCAGGGGGGAAAACCTCCA GCTGAGCCTGCTTCCCCCTCCCCCTGGGGGGAAAACCTCCA < 41bp 1 0.390311490599749 1 0.154043793678284 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778415 chr1:16778419 synonymous SNV . 0 25 hm5C_associated_SNPs_27074 0 0 1 0 2 NECAP2 chr1:16778333 3'AG 16778333 Downstream 87bp
chr1 16778419 16778419 1 + A T LUAD 16778415 + 16778395 16778435 41 GCTGAGCCTGCTTCCCCCTCCCCCAGGGGGGAAAACCTCCA GCTGAGCCTGCTTCCCCCTCCCCCTGGGGGGAAAACCTCCA < 41bp 1 0.390311490599749 1 0.154043793678284 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778415 chr1:16778419 synonymous SNV . 0 25 hm5C_associated_SNPs_27074 0 0 1 0 2 NECAP2 chr1:16778510 5'GT 16778510 Upstream 92bp
chr1 16778419 16778419 1 + A T LUAD 16778416 + 16778396 16778436 41 CTGAGCCTGCTTCCCCCTCCCCCAGGGGGGAAAACCTCCAC CTGAGCCTGCTTCCCCCTCCCCCTGGGGGGAAAACCTCCAC < 41bp 1 0.558686122455174 1 0.350363343954086 experiment 0.882627755089653 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778416 chr1:16778419 synonymous SNV . 0 24 hm5C_associated_SNPs_27075 0 0 1 0 2 NECAP2 chr1:16778333 3'AG 16778333 Downstream 87bp
chr1 16778419 16778419 1 + A T LUAD 16778416 + 16778396 16778436 41 CTGAGCCTGCTTCCCCCTCCCCCAGGGGGGAAAACCTCCAC CTGAGCCTGCTTCCCCCTCCCCCTGGGGGGAAAACCTCCAC < 41bp 1 0.558686122455174 1 0.350363343954086 experiment 0.882627755089653 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778416 chr1:16778419 synonymous SNV . 0 24 hm5C_associated_SNPs_27075 0 0 1 0 2 NECAP2 chr1:16778510 5'GT 16778510 Upstream 92bp
chr1 16778419 16778419 1 + A T LUAD 16778417 + 16778397 16778437 41 TGAGCCTGCTTCCCCCTCCCCCAGGGGGGAAAACCTCCACC TGAGCCTGCTTCCCCCTCCCCCTGGGGGGAAAACCTCCACC < 41bp 1 0.522302020805099 1 0.392767071723938 experiment 0.955395958389803 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778417 chr1:16778419 synonymous SNV . 0 23 hm5C_associated_SNPs_27076 0 0 1 0 2 NECAP2 chr1:16778333 3'AG 16778333 Downstream 87bp
chr1 16778419 16778419 1 + A T LUAD 16778417 + 16778397 16778437 41 TGAGCCTGCTTCCCCCTCCCCCAGGGGGGAAAACCTCCACC TGAGCCTGCTTCCCCCTCCCCCTGGGGGGAAAACCTCCACC < 41bp 1 0.522302020805099 1 0.392767071723938 experiment 0.955395958389803 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778417 chr1:16778419 synonymous SNV . 0 23 hm5C_associated_SNPs_27076 0 0 1 0 2 NECAP2 chr1:16778510 5'GT 16778510 Upstream 92bp
chr19 7620649 7620649 1 + G C LUAD 7620645 + 7620625 7620665 41 GCAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGA GCAGCGGGCCCGGGAGTGGGCCAACGTGTGTGTTGCGAGGA < 41bp 1 0.104666686958492 1 0.266198933124542 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620645 chr19:7620649 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_27077 0 0 0 0 1 PNPLA6 chr19:7620649 5'GT 7620649 Upstream 1bp
chr19 7620649 7620649 1 + G C LUAD 7620646 + 7620626 7620666 41 CAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGAG CAGCGGGCCCGGGAGTGGGCCAACGTGTGTGTTGCGAGGAG < 41bp 1 0.312673500618951 1 0.500672161579132 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620646 chr19:7620649 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_27078 0 0 0 0 1 PNPLA6 chr19:7620649 5'GT 7620649 Upstream 1bp
chr17 41599497 41599497 1 + G T LUAD 41599512 + 41599492 41599532 41 ATGCTGCCAAGAAAGACCCGCAGGAGGGTTACCGGACACTG ATGCTTCCAAGAAAGACCCGCAGGAGGGTTACCGGACACTG < 41bp 1 0.783847034167463 1 0.549315750598907 experiment 0.432305931665073 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41599512 chr17:41599497 nonsynonymous SNV 0.997 1 6 hm5C_associated_SNPs_27079 0 0 0 0 2 DHX8 chr17:41599415 3'AG 41599415 Downstream 83bp
chr17 41599497 41599497 1 + G T LUAD 41599512 + 41599492 41599532 41 ATGCTGCCAAGAAAGACCCGCAGGAGGGTTACCGGACACTG ATGCTTCCAAGAAAGACCCGCAGGAGGGTTACCGGACACTG < 41bp 1 0.783847034167463 1 0.549315750598907 experiment 0.432305931665073 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41599512 chr17:41599497 nonsynonymous SNV 0.997 1 6 hm5C_associated_SNPs_27079 0 0 0 0 2 DHX8 chr17:41599594 5'GT 41599594 Upstream 98bp
chr7 128478828 128478828 1 + G T LUAD 128478838 + 128478818 128478858 41 CCCATCACCCGCAGTCCCTTCCCTGTCCATGTGTCGGAAGG CCCATCACCCTCAGTCCCTTCCCTGTCCATGTGTCGGAAGG < 41bp 1 0.0600443260850577 1 0.0262850821018219 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128478838 chr7:128478828 nonsynonymous SNV 0.995 2 11 hm5C_associated_SNPs_27080 0 0 0 0 1 FLNC chr7:128478857 5'GT 128478857 Upstream 30bp
chr16 30081487 30081487 1 + G T LUAD 30081505 + 30081485 30081525 41 TGGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACG TGTGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACG < 41bp 1 0.0721557309640221 1 0.0471870005130768 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081505 chr16:30081487 nonsynonymous SNV 0.725 3 3 hm5C_associated_SNPs_27087 0 0 1 0 1 ALDOA chr16:30081438 3'AG 30081438 Downstream 50bp
chr16 30081487 30081487 1 + G T LUAD 30081506 + 30081486 30081526 41 GGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGC GTGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGC < 41bp 1 0.0621827687525191 1 0.0591294467449188 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081506 chr16:30081487 nonsynonymous SNV 0.725 3 2 hm5C_associated_SNPs_27088 0 0 1 0 1 ALDOA chr16:30081438 3'AG 30081438 Downstream 50bp
chr16 30081487 30081487 1 + G T LUAD 30081507 + 30081487 30081527 41 GGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGCC TGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGCC < 41bp 1 0.176746160341164 1 0.064243346452713 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081507 chr16:30081487 nonsynonymous SNV 0.725 3 1 hm5C_associated_SNPs_27089 0 0 1 0 1 ALDOA chr16:30081438 3'AG 30081438 Downstream 50bp
chr7 142460282 142460282 1 + C A LUAD 142460283 + 142460263 142460303 41 CTCTTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGCA CTCTTCCTGATCCTCACAGACGACTACCCAGACGAGCTGCA < 41bp 1 0.185073016953242 1 0.134902745485306 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460283 chr7:142460282 nonsynonymous SNV 0.002 1 20 hm5C_associated_SNPs_27091 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 1bp
chr7 142460282 142460282 1 + C A LUAD 142460286 + 142460266 142460306 41 TTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTG TTCCTGATCCTCACAGACGACTACCCAGACGAGCTGCAGTG < 41bp 1 0.135239604114563 1 0.127875149250031 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460286 chr7:142460282 nonsynonymous SNV 0.002 1 17 hm5C_associated_SNPs_27092 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 1bp
chr7 142460282 142460282 1 + C A LUAD 142460289 + 142460269 142460309 41 CTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCT CTGATCCTCACAGACGACTACCCAGACGAGCTGCAGTGCCT < 41bp 1 0.117401801119131 1 0.168737858533859 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460289 chr7:142460282 nonsynonymous SNV 0.002 1 14 hm5C_associated_SNPs_27093 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 1bp
chr7 142460282 142460282 1 + C A LUAD 142460290 + 142460270 142460310 41 TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTG TGATCCTCACAGACGACTACCCAGACGAGCTGCAGTGCCTG < 41bp 1 0.379668709111195 1 0.235118985176086 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460290 chr7:142460282 nonsynonymous SNV 0.002 1 13 hm5C_associated_SNPs_27094 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 1bp
chr7 142460282 142460282 1 + C A LUAD 142460291 + 142460271 142460311 41 GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGG GATCCTCACAGACGACTACCCAGACGAGCTGCAGTGCCTGG < 41bp 1 0.409838568104512 1 0.38178288936615 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460291 chr7:142460282 nonsynonymous SNV 0.002 1 12 hm5C_associated_SNPs_27095 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 1bp
chr7 142460282 142460282 1 + C A LUAD 142460295 + 142460275 142460315 41 CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGC CTCACAGACGACTACCCAGACGAGCTGCAGTGCCTGGATGC < 41bp 1 0.419517240678029 1 0.414739310741425 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460295 chr7:142460282 nonsynonymous SNV 0.002 1 8 hm5C_associated_SNPs_27096 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 1bp
chr7 142460282 142460282 1 + C A LUAD 142460299 + 142460279 142460319 41 CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT CAGACGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT < 41bp 1 0.652011659337701 1 0.165842831134796 experiment 0.695976681324597 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460299 chr7:142460282 nonsynonymous SNV 0.002 1 4 hm5C_associated_SNPs_27097 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 1bp
chr7 142460282 142460282 1 + C A LUAD 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG ACGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG < 41bp 1 0.309668812947108 1 0.21488144993782 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460282 nonsynonymous SNV 0.002 1 1 hm5C_associated_SNPs_27098 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 1bp
chr1 39910445 39910445 1 + C T LUAD 39910457 + 39910437 39910477 41 AGACAGAACAGAGTGTAGCACTTTTGGAGCAGAAGTGGCAT AGACAGAATAGAGTGTAGCACTTTTGGAGCAGAAGTGGCAT < 41bp 1 0.0640951019799832 1 0.0401722490787506 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39910457 chr1:39910445 stopgain 0.999 1 9 hm5C_associated_SNPs_27100 0 0 1 0 1 MACF1 chr1:39910507 5'GT 39910507 Upstream 63bp
chrX 107821201 107821201 1 + G T LUAD 107821198 + 107821178 107821218 41 TTAGGGCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGG TTAGGGCCCTCCTGGTCCACCAGTACTTCCAGGACCTAAGG < 41bp 1 0.174956892549686 1 0.361010700464249 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107821198 chrX:107821201 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_27103 0 0 1 0 2 COL4A5 chrX:107821182 3'AG 107821182 Downstream 20bp
chrX 107821201 107821201 1 + G T LUAD 107821198 + 107821178 107821218 41 TTAGGGCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGG TTAGGGCCCTCCTGGTCCACCAGTACTTCCAGGACCTAAGG < 41bp 1 0.174956892549686 1 0.361010700464249 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107821198 chrX:107821201 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_27103 0 0 1 0 2 COL4A5 chrX:107821217 5'GT 107821217 Upstream 17bp
chrX 107821201 107821201 1 + G T LUAD 107821203 + 107821183 107821223 41 GCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGGTAATT GCCCTCCTGGTCCACCAGTACTTCCAGGACCTAAGGTAATT < 41bp 1 0.0388595622914353 1 0.0269274413585663 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107821203 chrX:107821201 nonsynonymous SNV 1.000 5 19 hm5C_associated_SNPs_27104 0 0 1 0 2 COL4A5 chrX:107821182 3'AG 107821182 Downstream 20bp
chrX 107821201 107821201 1 + G T LUAD 107821203 + 107821183 107821223 41 GCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGGTAATT GCCCTCCTGGTCCACCAGTACTTCCAGGACCTAAGGTAATT < 41bp 1 0.0388595622914353 1 0.0269274413585663 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107821203 chrX:107821201 nonsynonymous SNV 1.000 5 19 hm5C_associated_SNPs_27104 0 0 1 0 2 COL4A5 chrX:107821217 5'GT 107821217 Upstream 17bp
chr8 22475291 22475291 1 + G C LUAD 22475273 + 22475253 22475293 41 AACCAGTCAGAGATGGAGTTCTCTTCACTTCAGGACATGGT AACCAGTCAGAGATGGAGTTCTCTTCACTTCAGGACATCGT < 41bp 1 0.0709543511019348 1 0.0950185656547546 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22475273 chr8:22475291 nonsynonymous SNV 0.998 2 39 hm5C_associated_SNPs_27105 0 0 1 0 2 CCAR2 chr8:22475209 3'AG 22475209 Downstream 83bp
chr8 22475291 22475291 1 + G C LUAD 22475273 + 22475253 22475293 41 AACCAGTCAGAGATGGAGTTCTCTTCACTTCAGGACATGGT AACCAGTCAGAGATGGAGTTCTCTTCACTTCAGGACATCGT < 41bp 1 0.0709543511019348 1 0.0950185656547546 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22475273 chr8:22475291 nonsynonymous SNV 0.998 2 39 hm5C_associated_SNPs_27105 0 0 1 0 2 CCAR2 chr8:22475291 5'GT 22475291 Upstream 1bp
chr10 12123617 12123617 1 + C T LUAD 12123616 + 12123596 12123636 41 CAGACACTGCAGGGACCCTTCCACACGGCAGGTATGGCTTC CAGACACTGCAGGGACCCTTCTACACGGCAGGTATGGCTTC < 41bp 1 0.77942666750227 1 0.930340886116028 experiment 0.441146664995459 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12123616 chr10:12123617 nonsynonymous SNV 0.790 0 22 hm5C_associated_SNPs_27106 0 0 0 0 1 DHTKD1 chr10:12123626 5'GT 12123626 Upstream 10bp
chr10 12123617 12123617 1 + C T LUAD 12123624 + 12123604 12123644 41 GCAGGGACCCTTCCACACGGCAGGTATGGCTTCTGCACAGC GCAGGGACCCTTCTACACGGCAGGTATGGCTTCTGCACAGC < 41bp 1 0.716202671062207 1 0.114564001560211 experiment 0.567594657875586 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12123624 chr10:12123617 nonsynonymous SNV 0.790 0 14 hm5C_associated_SNPs_27107 0 0 0 0 1 DHTKD1 chr10:12123626 5'GT 12123626 Upstream 10bp
chr22 21272460 21272460 1 + C G LUAD 21272448 + 21272428 21272468 41 GCCGTTTTAAGATCGGGGACCAGGAATTTGACCATTTGCCG GCCGTTTTAAGATCGGGGACCAGGAATTTGACGATTTGCCG < 41bp 1 0.78761043553311 1 0.768723964691162 experiment 0.42477912893378 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CRKL ENSG00000099942 CDS Human protein_coding chr22:21272448 chr22:21272460 nonsynonymous SNV 0.990 1 33 hm5C_associated_SNPs_27108 0 0 1 1 1 CRKL chr22:21272533 5'GT 21272533 Upstream 74bp
chrX 48399815 48399815 1 + C A LUAD 48399810 + 48399790 48399830 41 GTGTTGCAGCACATCCTCATCCGAGCCTTTGATTTGAGTGG GTGTTGCAGCACATCCTCATCCGAGACTTTGATTTGAGTGG < 41bp 1 0.450597172121309 1 0.571389675140381 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399810 chrX:48399815 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_27109 0 0 0 0 3 TBC1D25 chrX:48399721 3'AG 48399721 Downstream 95bp
chrX 48399815 48399815 1 + C A LUAD 48399810 + 48399790 48399830 41 GTGTTGCAGCACATCCTCATCCGAGCCTTTGATTTGAGTGG GTGTTGCAGCACATCCTCATCCGAGACTTTGATTTGAGTGG < 41bp 1 0.450597172121309 1 0.571389675140381 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399810 chrX:48399815 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_27109 0 0 0 0 3 TBC1D25 chrX:48399830 5'GT 48399830 Upstream 16bp
chrX 48399815 48399815 1 + C A LUAD 48399810 + 48399790 48399830 41 GTGTTGCAGCACATCCTCATCCGAGCCTTTGATTTGAGTGG GTGTTGCAGCACATCCTCATCCGAGACTTTGATTTGAGTGG < 41bp 1 0.450597172121309 1 0.571389675140381 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399810 chrX:48399815 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_27109 0 0 0 0 3 TBC1D25 chrX:48399901 5'GT 48399901 Upstream 87bp
chr3 25542757 25542757 1 + A G LUAD 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACCAGGGATCGATGCCAATACTGTCGACTCCAGAAGTGCTT < 41bp 1 0.241625432889814 1 0.0905558466911316 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542757 nonsynonymous SNV 1.000 5 7 hm5C_associated_SNPs_27111 0 0 1 0 2 RARB chr3:25542673 3'AG 25542673 Downstream 85bp
chr3 25542757 25542757 1 + A G LUAD 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACCAGGGATCGATGCCAATACTGTCGACTCCAGAAGTGCTT < 41bp 1 0.241625432889814 1 0.0905558466911316 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542757 nonsynonymous SNV 1.000 5 7 hm5C_associated_SNPs_27111 0 0 1 0 2 RARB chr3:25542814 5'GT 25542814 Upstream 58bp
chr1 228468275 228468275 1 + G T LUAD 228468289 + 228468269 228468309 41 TCCGCAGAGGAGCGCGGCACCCTGGCCCTGCAGTGTGAAGT TCCGCATAGGAGCGCGGCACCCTGGCCCTGCAGTGTGAAGT < 41bp 1 0.0477329298402258 1 0.0572911202907562 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228468289 chr1:228468275 stopgain 0.003 1 7 hm5C_associated_SNPs_27112 0 0 0 0 1 OBSCN chr1:228468231 3'AG 228468231 Downstream 45bp
chr7 94057032 94057032 1 + C A LUAD 94057027 + 94057007 94057047 41 CGATGGAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCAC CGATGGAGACTTCTACAGGGCTGACAAGCCTCGCTCAGCAC < 41bp 1 0.134640727939889 1 0.0254159271717072 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057027 chr7:94057032 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_27113 0 0 0 0 1 COL1A2 chr7:94056939 3'AG 94056939 Downstream 94bp
chr3 48506022 48506022 1 + G T LUAD 48506023 + 48506003 48506043 41 TTGGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAAC TTGGTGTGCAGAGCCCCTTTCCCCCAGTCACTGGCTCCAAC < 41bp 1 0.139707570452209 1 0.0980057418346405 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506023 chr3:48506022 nonsynonymous SNV 0.149 0 20 hm5C_associated_SNPs_27114 0 0 1 0 2 ATRIP chr3:48505981 3'AG 48505981 Downstream 42bp
chr3 48506022 48506022 1 + G T LUAD 48506023 + 48506003 48506043 41 TTGGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAAC TTGGTGTGCAGAGCCCCTTTCCCCCAGTCACTGGCTCCAAC < 41bp 1 0.139707570452209 1 0.0980057418346405 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506023 chr3:48506022 nonsynonymous SNV 0.149 0 20 hm5C_associated_SNPs_27114 0 0 1 0 2 ATRIP chr3:48506061 5'GT 48506061 Upstream 40bp
chr3 48506022 48506022 1 + G T LUAD 48506024 + 48506004 48506044 41 TGGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACT TGGTGTGCAGAGCCCCTTTCCCCCAGTCACTGGCTCCAACT < 41bp 1 0.4603127032506 1 0.549074828624725 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506024 chr3:48506022 nonsynonymous SNV 0.149 0 19 hm5C_associated_SNPs_27115 0 0 1 0 2 ATRIP chr3:48505981 3'AG 48505981 Downstream 42bp
chr3 48506022 48506022 1 + G T LUAD 48506024 + 48506004 48506044 41 TGGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACT TGGTGTGCAGAGCCCCTTTCCCCCAGTCACTGGCTCCAACT < 41bp 1 0.4603127032506 1 0.549074828624725 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506024 chr3:48506022 nonsynonymous SNV 0.149 0 19 hm5C_associated_SNPs_27115 0 0 1 0 2 ATRIP chr3:48506061 5'GT 48506061 Upstream 40bp
chr3 48506022 48506022 1 + G T LUAD 48506025 + 48506005 48506045 41 GGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTG GGTGTGCAGAGCCCCTTTCCCCCAGTCACTGGCTCCAACTG < 41bp 1 0.383169281409768 1 0.0660290420055389 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506025 chr3:48506022 nonsynonymous SNV 0.149 0 18 hm5C_associated_SNPs_27116 0 0 1 0 2 ATRIP chr3:48505981 3'AG 48505981 Downstream 42bp
chr3 48506022 48506022 1 + G T LUAD 48506025 + 48506005 48506045 41 GGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTG GGTGTGCAGAGCCCCTTTCCCCCAGTCACTGGCTCCAACTG < 41bp 1 0.383169281409768 1 0.0660290420055389 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506025 chr3:48506022 nonsynonymous SNV 0.149 0 18 hm5C_associated_SNPs_27116 0 0 1 0 2 ATRIP chr3:48506061 5'GT 48506061 Upstream 40bp
chr3 48506022 48506022 1 + G T LUAD 48506026 + 48506006 48506046 41 GTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGC GTGTGCAGAGCCCCTTTCCCCCAGTCACTGGCTCCAACTGC < 41bp 1 0.373741383793443 1 0.0919609069824219 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506026 chr3:48506022 nonsynonymous SNV 0.149 0 17 hm5C_associated_SNPs_27117 0 0 1 0 2 ATRIP chr3:48505981 3'AG 48505981 Downstream 42bp
chr3 48506022 48506022 1 + G T LUAD 48506026 + 48506006 48506046 41 GTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGC GTGTGCAGAGCCCCTTTCCCCCAGTCACTGGCTCCAACTGC < 41bp 1 0.373741383793443 1 0.0919609069824219 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506026 chr3:48506022 nonsynonymous SNV 0.149 0 17 hm5C_associated_SNPs_27117 0 0 1 0 2 ATRIP chr3:48506061 5'GT 48506061 Upstream 40bp
chr3 48506022 48506022 1 + G T LUAD 48506027 + 48506007 48506047 41 TGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGCC TGTGCAGAGCCCCTTTCCCCCAGTCACTGGCTCCAACTGCC < 41bp 1 0.252567781736458 1 0.114312827587128 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506027 chr3:48506022 nonsynonymous SNV 0.149 0 16 hm5C_associated_SNPs_27118 0 0 1 0 2 ATRIP chr3:48505981 3'AG 48505981 Downstream 42bp
chr3 48506022 48506022 1 + G T LUAD 48506027 + 48506007 48506047 41 TGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGCC TGTGCAGAGCCCCTTTCCCCCAGTCACTGGCTCCAACTGCC < 41bp 1 0.252567781736458 1 0.114312827587128 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506027 chr3:48506022 nonsynonymous SNV 0.149 0 16 hm5C_associated_SNPs_27118 0 0 1 0 2 ATRIP chr3:48506061 5'GT 48506061 Upstream 40bp
chr6 110059615 110059615 1 + A G LUAD 110059608 + 110059588 110059628 41 ATATAATTAAAAGTACTGTGCATCGTGACTGGCTTTTGTAT ATATAATTAAAAGTACTGTGCATCGTGGCTGGCTTTTGTAT < 41bp 1 0.104132474413674 1 0.0604777336120605 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FIG4 ENSG00000112367 CDS Human protein_coding chr6:110059608 chr6:110059615 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_27123 0 0 1 0 2 FIG4 chr6:110059528 3'AG 110059528 Downstream 88bp
chr6 110059615 110059615 1 + A G LUAD 110059608 + 110059588 110059628 41 ATATAATTAAAAGTACTGTGCATCGTGACTGGCTTTTGTAT ATATAATTAAAAGTACTGTGCATCGTGGCTGGCTTTTGTAT < 41bp 1 0.104132474413674 1 0.0604777336120605 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FIG4 ENSG00000112367 CDS Human protein_coding chr6:110059608 chr6:110059615 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_27123 0 0 1 0 2 FIG4 chr6:110059656 5'GT 110059656 Upstream 42bp
chr4 126337745 126337745 1 + G C LUAD 126337729 + 126337709 126337749 41 GAGTAACACAGAGTCTGGATCGGGAAACAAAAGAGCGCTTT GAGTAACACAGAGTCTGGATCGGGAAACAAAAGAGCCCTTT < 41bp 1 0.641366398297072 1 0.947606086730957 experiment 0.717267203405856 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126337729 chr4:126337745 nonsynonymous SNV 0.003 1 37 hm5C_associated_SNPs_27125 0 0 0 0 1 FAT4 chr4:126337777 5'GT 126337777 Upstream 33bp
chr19 47491246 47491246 1 + G T LUAD 47491265 + 47491245 47491285 41 GGACTGAGCACGGAAGGCATCTACCGGGTCAGCGGGAACAA GTACTGAGCACGGAAGGCATCTACCGGGTCAGCGGGAACAA < 41bp 1 0.356904066349918 1 0.333994686603546 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491265 chr19:47491246 nonsynonymous SNV 0.524 4 2 hm5C_associated_SNPs_27126 0 0 1 0 2 ARHGAP35 chr19:47491246 3'AG 47491246 Downstream 1bp
chr19 47491246 47491246 1 + G T LUAD 47491265 + 47491245 47491285 41 GGACTGAGCACGGAAGGCATCTACCGGGTCAGCGGGAACAA GTACTGAGCACGGAAGGCATCTACCGGGTCAGCGGGAACAA < 41bp 1 0.356904066349918 1 0.333994686603546 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491265 chr19:47491246 nonsynonymous SNV 0.524 4 2 hm5C_associated_SNPs_27126 0 0 1 0 2 ARHGAP35 chr19:47491323 5'GT 47491323 Upstream 78bp
chr7 142459828 142459828 1 + C A LUAD 142459809 + 142459789 142459829 41 GCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACT GCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCAAT < 41bp 1 0.164872410419702 1 0.0358678102493286 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459809 chr7:142459828 nonsynonymous SNV 0.001 3 40 hm5C_associated_SNPs_27127 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 51bp
chr7 142459828 142459828 1 + C A LUAD 142459810 + 142459790 142459830 41 CGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTG CGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCAATG < 41bp 1 0.167872987167928 1 0.0463005602359772 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459810 chr7:142459828 nonsynonymous SNV 0.001 3 39 hm5C_associated_SNPs_27128 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 51bp
chr7 142459828 142459828 1 + C A LUAD 142459811 + 142459791 142459831 41 GTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGG GTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCAATGG < 41bp 1 0.648887572979207 1 0.0313005149364471 experiment 0.702224854041587 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459811 chr7:142459828 nonsynonymous SNV 0.001 3 38 hm5C_associated_SNPs_27129 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 51bp
chr7 142459828 142459828 1 + C A LUAD 142459813 + 142459793 142459833 41 GTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCA GTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCAATGGCA < 41bp 1 0.257758153836124 1 0.074379563331604 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459813 chr7:142459828 nonsynonymous SNV 0.001 3 36 hm5C_associated_SNPs_27130 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 51bp
chr7 142459828 142459828 1 + C A LUAD 142459814 + 142459794 142459834 41 TCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCAC TCCACCATCTCTCTGCCCACCGCCCCTCCAGCCAATGGCAC < 41bp 1 0.465215080878135 1 0.11024683713913 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459814 chr7:142459828 nonsynonymous SNV 0.001 3 35 hm5C_associated_SNPs_27131 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 51bp
chr7 142459828 142459828 1 + C A LUAD 142459816 + 142459796 142459836 41 CACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGA CACCATCTCTCTGCCCACCGCCCCTCCAGCCAATGGCACGA < 41bp 1 0.243702497274983 1 0.337568819522858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459816 chr7:142459828 nonsynonymous SNV 0.001 3 33 hm5C_associated_SNPs_27132 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 51bp
chr7 142459828 142459828 1 + C A LUAD 142459817 + 142459797 142459837 41 ACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAA ACCATCTCTCTGCCCACCGCCCCTCCAGCCAATGGCACGAA < 41bp 1 0.119864740062341 1 0.682848811149597 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459817 chr7:142459828 nonsynonymous SNV 0.001 3 32 hm5C_associated_SNPs_27133 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 51bp
chr7 142459828 142459828 1 + C A LUAD 142459818 + 142459798 142459838 41 CCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAG CCATCTCTCTGCCCACCGCCCCTCCAGCCAATGGCACGAAG < 41bp 1 0.13189280872898 1 0.333656966686249 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459818 chr7:142459828 nonsynonymous SNV 0.001 3 31 hm5C_associated_SNPs_27134 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 51bp
chr7 142459828 142459828 1 + C A LUAD 142459819 + 142459799 142459839 41 CATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGT CATCTCTCTGCCCACCGCCCCTCCAGCCAATGGCACGAAGT < 41bp 1 0.671784671064639 1 0.95698493719101 experiment 0.656430657870722 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459819 chr7:142459828 nonsynonymous SNV 0.001 3 30 hm5C_associated_SNPs_27135 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 51bp
chr7 142459828 142459828 1 + C A LUAD 142459821 + 142459801 142459841 41 TCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGC TCTCTCTGCCCACCGCCCCTCCAGCCAATGGCACGAAGTGC < 41bp 1 0.291242054749449 1 0.498114913702011 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459821 chr7:142459828 nonsynonymous SNV 0.001 3 28 hm5C_associated_SNPs_27136 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 51bp
chr7 142459828 142459828 1 + C A LUAD 142459822 + 142459802 142459842 41 CTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCC CTCTCTGCCCACCGCCCCTCCAGCCAATGGCACGAAGTGCC < 41bp 1 0.435654925595258 1 0.505254149436951 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459822 chr7:142459828 nonsynonymous SNV 0.001 3 27 hm5C_associated_SNPs_27137 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 51bp
chr7 142459828 142459828 1 + C A LUAD 142459825 + 142459805 142459845 41 TCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCA TCTGCCCACCGCCCCTCCAGCCAATGGCACGAAGTGCCTCA < 41bp 1 0.350685839284634 1 0.150812953710556 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459825 chr7:142459828 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_27138 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 51bp
chr7 142459828 142459828 1 + C A LUAD 142459826 + 142459806 142459846 41 CTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCAT CTGCCCACCGCCCCTCCAGCCAATGGCACGAAGTGCCTCAT < 41bp 1 0.62126561274848 1 0.392366290092468 experiment 0.757468774503041 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459826 chr7:142459828 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_27139 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 51bp
chr7 142459828 142459828 1 + C A LUAD 142459834 + 142459814 142459854 41 CGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCTCTGGCT CGCCCCTCCAGCCAATGGCACGAAGTGCCTCATCTCTGGCT < 41bp 1 0.659799067698963 1 0.265079081058502 experiment 0.680401864602075 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459834 chr7:142459828 nonsynonymous SNV 0.001 3 15 hm5C_associated_SNPs_27140 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 51bp
chr7 142459828 142459828 1 + C A LUAD 142459841 + 142459821 142459861 41 CCAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAA CCAGCCAATGGCACGAAGTGCCTCATCTCTGGCTGGGGCAA < 41bp 1 0.425100607967218 1 0.0470782816410065 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459841 chr7:142459828 nonsynonymous SNV 0.001 3 8 hm5C_associated_SNPs_27141 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 51bp
chr7 142459828 142459828 1 + C A LUAD 142459842 + 142459822 142459862 41 CAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAC CAGCCAATGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAC < 41bp 1 0.525781944341437 1 0.0590893626213074 experiment 0.948436111317126 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459842 chr7:142459828 nonsynonymous SNV 0.001 3 7 hm5C_associated_SNPs_27142 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 51bp
chr7 142459828 142459828 1 + C A LUAD 142459844 + 142459824 142459864 41 GCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACAC GCCAATGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACAC < 41bp 1 0.518765205414634 1 0.0149041414260864 experiment 0.962469589170732 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459844 chr7:142459828 nonsynonymous SNV 0.001 3 5 hm5C_associated_SNPs_27143 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 51bp
chr7 142459828 142459828 1 + C A LUAD 142459847 + 142459827 142459867 41 ACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACACTGC AATGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACACTGC < 41bp 1 0.718573559041508 1 0.45250192284584 experiment 0.562852881916983 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459847 chr7:142459828 nonsynonymous SNV 0.001 3 2 hm5C_associated_SNPs_27144 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 51bp
chr3 49713158 49713158 1 + A G LUAD 49713144 + 49713124 49713164 41 CAGACTGCTGAGCAGAGAGTCTCCTTCAGGCACCATGAAAG CAGACTGCTGAGCAGAGAGTCTCCTTCAGGCACCGTGAAAG < 41bp 1 0.324421664952029 1 0.21526312828064 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49713144 chr3:49713158 nonsynonymous SNV 0.988 0 35 hm5C_associated_SNPs_27145 0 0 1 0 2 APEH chr3:49713127 3'AG 49713127 Downstream 32bp
chr3 49713158 49713158 1 + A G LUAD 49713144 + 49713124 49713164 41 CAGACTGCTGAGCAGAGAGTCTCCTTCAGGCACCATGAAAG CAGACTGCTGAGCAGAGAGTCTCCTTCAGGCACCGTGAAAG < 41bp 1 0.324421664952029 1 0.21526312828064 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49713144 chr3:49713158 nonsynonymous SNV 0.988 0 35 hm5C_associated_SNPs_27145 0 0 1 0 2 APEH chr3:49713220 5'GT 49713220 Upstream 63bp
chr20 57484830 57484830 1 + G T LUAD 57484828 + 57484808 57484848 41 CCAACCGCCTGCAGGAGGCTCTGAACCTCTTCAAGAGCATC CCAACCGCCTGCAGGAGGCTCTTAACCTCTTCAAGAGCATC < 41bp 1 0.147692767658799 1 0.125832378864288 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNAS ENSG00000087460 CDS Human protein_coding chr20:57484828 chr20:57484830 synonymous SNV . 0 23 hm5C_associated_SNPs_27146 0 0 1 0 2 GNAS chr20:57484739 3'AG 57484739 Downstream 92bp
chr20 57484830 57484830 1 + G T LUAD 57484828 + 57484808 57484848 41 CCAACCGCCTGCAGGAGGCTCTGAACCTCTTCAAGAGCATC CCAACCGCCTGCAGGAGGCTCTTAACCTCTTCAAGAGCATC < 41bp 1 0.147692767658799 1 0.125832378864288 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNAS ENSG00000087460 CDS Human protein_coding chr20:57484828 chr20:57484830 synonymous SNV . 0 23 hm5C_associated_SNPs_27146 0 0 1 0 2 GNAS chr20:57484859 5'GT 57484859 Upstream 30bp
chr17 7155850 7155850 1 + G T LUAD 7155860 + 7155840 7155880 41 GCCAGAGCAGGGACCGGACGCGAGTTGGAGATGTTGGACTC GCCAGAGCAGTGACCGGACGCGAGTTGGAGATGTTGGACTC < 41bp 1 0.786642850967164 1 0.722764253616333 experiment 0.426714298065671 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7155860 chr17:7155850 nonsynonymous SNV 0.000 1 11 hm5C_associated_SNPs_27149 0 0 1 0 1 ELP5 chr17:7155915 5'GT 7155915 Upstream 66bp
chr16 57003901 57003901 1 + A G LUAD 57003897 + 57003877 57003917 41 TCCATAAGCTGCTCCTGCATCTCCAAGGGGAGCGAGAGTAA TCCATAAGCTGCTCCTGCATCTCCGAGGGGAGCGAGAGTAA < 41bp 1 0.763906660823934 1 0.690230131149292 experiment 0.472186678352132 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CETP ENSG00000087237 CDS Human protein_coding chr16:57003897 chr16:57003901 nonsynonymous SNV 0.249 0 25 hm5C_associated_SNPs_27150 0 0 0 0 1 CETP chr16:57003826 3'AG 57003826 Downstream 76bp
chr7 94057008 94057008 1 + G A LUAD 94057027 + 94057007 94057047 41 CGATGGAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCAC CAATGGAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCAC < 41bp 1 0.104127192494915 1 0.0187558829784393 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057027 chr7:94057008 nonsynonymous SNV 0.977 2 2 hm5C_associated_SNPs_27151 0 0 0 0 1 COL1A2 chr7:94056939 3'AG 94056939 Downstream 70bp
chr2 27280267 27280267 1 + G T LUAD 27280287 + 27280267 27280307 41 GGCTTTCCCCTCCAGATACACTGTGGAACTATTTGAGCAGG TGCTTTCCCCTCCAGATACACTGTGGAACTATTTGAGCAGG < 41bp 1 0.527419802490711 1 0.312748491764069 experiment 0.945160395018578 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27280287 chr2:27280267 synonymous SNV . 0 1 hm5C_associated_SNPs_27152 0 0 1 0 2 AGBL5 chr2:27280171 3'AG 27280171 Downstream 97bp
chr2 27280267 27280267 1 + G T LUAD 27280287 + 27280267 27280307 41 GGCTTTCCCCTCCAGATACACTGTGGAACTATTTGAGCAGG TGCTTTCCCCTCCAGATACACTGTGGAACTATTTGAGCAGG < 41bp 1 0.527419802490711 1 0.312748491764069 experiment 0.945160395018578 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27280287 chr2:27280267 synonymous SNV . 0 1 hm5C_associated_SNPs_27152 0 0 1 0 2 AGBL5 chr2:27280306 5'GT 27280306 Upstream 40bp
chr16 12662416 12662416 1 + G T LUAD 12662431 + 12662411 12662451 41 TTCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGA TTCCCTCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGA < 41bp 1 0.312612112743434 1 0.715565085411072 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662431 chr16:12662416 nonsynonymous SNV 0.921 2 6 hm5C_associated_SNPs_27153 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 54bp
chr16 12662416 12662416 1 + G T LUAD 12662432 + 12662412 12662452 41 TCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGAC TCCCTCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGAC < 41bp 1 0.32138290399637 1 0.550542533397675 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662432 chr16:12662416 nonsynonymous SNV 0.921 2 5 hm5C_associated_SNPs_27154 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 54bp
chr16 12662416 12662416 1 + G T LUAD 12662433 + 12662413 12662453 41 CCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGACC CCCTCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGACC < 41bp 1 0.436629461933197 1 0.895554184913635 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662433 chr16:12662416 nonsynonymous SNV 0.921 2 4 hm5C_associated_SNPs_27155 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 54bp
chr20 11900381 11900381 1 + G T LUAD 11900386 + 11900366 11900406 41 TATGTTTTAGCTGTTGGGAGCTCTGTGTTCCATGCGATGTT TATGTTTTAGCTGTTTGGAGCTCTGTGTTCCATGCGATGTT < 41bp 1 0.188567692844188 1 0.120908200740814 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BTBD3 ENSG00000132640 CDS Human protein_coding chr20:11900386 chr20:11900381 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_27157 0 0 1 0 1 BTBD3 chr20:11900366 3'AG 11900366 Downstream 16bp
chr19 11105642 11105642 1 + G T LUAD 11105627 + 11105607 11105647 41 ATGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACGAGCGG ATGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACTAGCGG < 41bp 1 0.618162834106972 1 0.733420372009277 experiment 0.763674331786055 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11105627 chr19:11105642 stopgain 0.030 1 36 hm5C_associated_SNPs_27158 0 0 1 0 1 SMARCA4 chr19:11105677 5'GT 11105677 Upstream 36bp
chr11 25004827 25004827 1 + G T LUAD 25004826 + 25004806 25004846 41 CTCTAAGCTTCCAGATGCAGCGGCCAAAAGCAAGGTACCTA CTCTAAGCTTCCAGATGCAGCTGCCAAAAGCAAGGTACCTA < 41bp 1 0.262849624282167 1 0.12959235906601 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LUZP2 ENSG00000187398 CDS Human protein_coding chr11:25004826 chr11:25004827 synonymous SNV . 0 22 hm5C_associated_SNPs_27159 0 0 0 0 1 LUZP2 chr11:25004839 5'GT 25004839 Upstream 13bp
chr19 46509878 46509878 1 + G T LUAD 46509891 + 46509871 46509911 41 CGGAACCGCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCC CGGAACCTCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCC < 41bp 1 0.0941541375307178 1 0.0712307393550873 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509891 chr19:46509878 nonsynonymous SNV 0.944 1 8 hm5C_associated_SNPs_27160 0 0 1 0 1 CCDC61 chr19:46509974 5'GT 46509974 Upstream 97bp
chr19 46509878 46509878 1 + G T LUAD 46509892 + 46509872 46509912 41 GGAACCGCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCCC GGAACCTCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCCC < 41bp 1 0.238829697320037 1 0.0577437579631805 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509892 chr19:46509878 nonsynonymous SNV 0.944 1 7 hm5C_associated_SNPs_27161 0 0 1 0 1 CCDC61 chr19:46509974 5'GT 46509974 Upstream 97bp
chr2 121554950 121554950 1 + G T LUAD 121554962 + 121554942 121554982 41 AAAAGTGGGATCCTGGAGGCCGCTGGCTTCCCCGACCCGGG AAAAGTGGTATCCTGGAGGCCGCTGGCTTCCCCGACCCGGG < 41bp 1 0.265802431949076 1 0.494011968374252 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GLI2 ENSG00000074047 CDS Human protein_coding chr2:121554962 chr2:121554950 synonymous SNV . 0 9 hm5C_associated_SNPs_27162 0 0 0 0 1 GLI2 chr2:121555044 5'GT 121555044 Upstream 95bp
chr11 25004819 25004819 1 + G T LUAD 25004826 + 25004806 25004846 41 CTCTAAGCTTCCAGATGCAGCGGCCAAAAGCAAGGTACCTA CTCTAAGCTTCCATATGCAGCGGCCAAAAGCAAGGTACCTA < 41bp 1 0.270284326026891 1 0.356850862503052 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LUZP2 ENSG00000187398 CDS Human protein_coding chr11:25004826 chr11:25004819 nonsynonymous SNV 0.008 0 14 hm5C_associated_SNPs_27163 0 0 0 0 1 LUZP2 chr11:25004839 5'GT 25004839 Upstream 21bp
chr11 95546154 95546154 1 + G C LUAD 95546139 + 95546119 95546159 41 CTTCAAGATAAGATTCGACGCTTGGAACTTGAGAGGATTCA CTTCAAGATAAGATTCGACGCTTGGAACTTGAGAGCATTCA < 41bp 1 0.482647014289044 1 0.0600002408027649 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CEP57 ENSG00000166037 CDS Human protein_coding chr11:95546139 chr11:95546154 nonsynonymous SNV 0.997 4 36 hm5C_associated_SNPs_27164 0 0 1 0 3 CEP57 chr11:95546068 3'AG 95546068 Downstream 87bp
chr11 95546154 95546154 1 + G C LUAD 95546139 + 95546119 95546159 41 CTTCAAGATAAGATTCGACGCTTGGAACTTGAGAGGATTCA CTTCAAGATAAGATTCGACGCTTGGAACTTGAGAGCATTCA < 41bp 1 0.482647014289044 1 0.0600002408027649 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CEP57 ENSG00000166037 CDS Human protein_coding chr11:95546139 chr11:95546154 nonsynonymous SNV 0.997 4 36 hm5C_associated_SNPs_27164 0 0 1 0 3 CEP57 chr11:95546096 3'AG 95546096 Downstream 59bp
chr11 95546154 95546154 1 + G C LUAD 95546139 + 95546119 95546159 41 CTTCAAGATAAGATTCGACGCTTGGAACTTGAGAGGATTCA CTTCAAGATAAGATTCGACGCTTGGAACTTGAGAGCATTCA < 41bp 1 0.482647014289044 1 0.0600002408027649 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CEP57 ENSG00000166037 CDS Human protein_coding chr11:95546139 chr11:95546154 nonsynonymous SNV 0.997 4 36 hm5C_associated_SNPs_27164 0 0 1 0 3 CEP57 chr11:95546116 3'AG 95546116 Downstream 39bp
chr14 75360058 75360058 1 + A T LUAD 75360054 + 75360034 75360074 41 CCTCTTTTCATTTTCAGTGTCTGCAGTAAAACCCACTGTTG CCTCTTTTCATTTTCAGTGTCTGCTGTAAAACCCACTGTTG < 41bp 1 0.588688467477529 1 0.0855450928211212 experiment 0.822623065044942 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DLST ENSG00000119689 CDS Human protein_coding chr14:75360054 chr14:75360058 synonymous SNV . 0 25 hm5C_associated_SNPs_27165 0 0 1 1 1 DLST chr14:75360127 5'GT 75360127 Upstream 70bp
chr7 134215412 134215412 1 + G T LUAD 134215396 + 134215376 134215416 41 CTTTTCTTTTGCCTTTCAGTCTCCTCTTGGCAAAGTGAAAG CTTTTCTTTTGCCTTTCAGTCTCCTCTTGGCAAAGTTAAAG < 41bp 1 0.234443481968895 1 0.292027294635773 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134215396 chr7:134215412 synonymous SNV . 0 37 hm5C_associated_SNPs_27166 0 0 1 0 1 AKR1B10 chr7:134215395 3'AG 134215395 Downstream 18bp
chr2 32897384 32897384 1 + G C LUAD 32897396 + 32897376 32897416 41 TAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCGGATCTG TAAAGTTACCAGATTGTGAACAGTTCCAGATGCCGGATCTG < 41bp 1 0.154552084250776 1 0.147445827722549 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32897396 chr2:32897384 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_27168 0 0 1 0 2 TTC27 chr2:32897339 3'AG 32897339 Downstream 46bp
chr2 32897384 32897384 1 + G C LUAD 32897396 + 32897376 32897416 41 TAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCGGATCTG TAAAGTTACCAGATTGTGAACAGTTCCAGATGCCGGATCTG < 41bp 1 0.154552084250776 1 0.147445827722549 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32897396 chr2:32897384 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_27168 0 0 1 0 2 TTC27 chr2:32897451 5'GT 32897451 Upstream 68bp
chr2 118579625 118579625 1 + G T LUAD 118579611 + 118579591 118579631 41 TCAACATCATTGTGGCCACACCAGGCCGTCTGCTGGACCAT TCAACATCATTGTGGCCACACCAGGCCGTCTGCTTGACCAT < 41bp 1 0.544031130813771 1 0.154429614543915 experiment 0.911937738372458 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579611 chr2:118579625 synonymous SNV . 0 35 hm5C_associated_SNPs_27174 0 0 1 0 1 DDX18 chr2:118579637 5'GT 118579637 Upstream 13bp
chr2 118579626 118579626 1 + G T LUAD 118579611 + 118579591 118579631 41 TCAACATCATTGTGGCCACACCAGGCCGTCTGCTGGACCAT TCAACATCATTGTGGCCACACCAGGCCGTCTGCTGTACCAT < 41bp 1 0.497212149831313 1 0.169942915439606 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579611 chr2:118579626 nonsynonymous SNV 0.992 4 36 hm5C_associated_SNPs_27175 0 0 1 0 1 DDX18 chr2:118579637 5'GT 118579637 Upstream 12bp
chr5 140076603 140076603 1 + G A LUAD 140076598 + 140076578 140076618 41 AACAAGCAGGCCCTGGAGGGCCTGGGAGACCTAAAGCTGCT AACAAGCAGGCCCTGGAGGGCCTGGAAGACCTAAAGCTGCT < 41bp 1 0.173601786096942 1 0.245291084051132 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HARS2 ENSG00000112855 CDS Human protein_coding chr5:140076598 chr5:140076603 nonsynonymous SNV 0.757 0 26 hm5C_associated_SNPs_27176 0 0 1 0 2 HARS2 chr5:140076528 3'AG 140076528 Downstream 76bp
chr5 140076603 140076603 1 + G A LUAD 140076598 + 140076578 140076618 41 AACAAGCAGGCCCTGGAGGGCCTGGGAGACCTAAAGCTGCT AACAAGCAGGCCCTGGAGGGCCTGGAAGACCTAAAGCTGCT < 41bp 1 0.173601786096942 1 0.245291084051132 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HARS2 ENSG00000112855 CDS Human protein_coding chr5:140076598 chr5:140076603 nonsynonymous SNV 0.757 0 26 hm5C_associated_SNPs_27176 0 0 1 0 2 HARS2 chr5:140076655 5'GT 140076655 Upstream 53bp
chr11 65824773 65824773 1 + C T LUAD 65824781 + 65824761 65824801 41 GCCCCACTCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCC GCCCCACTCCTATAGTTTTGCCCATGGGAGCCCCTGTTCCC < 41bp 1 0.379560780909505 1 0.1583571434021 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824781 chr11:65824773 nonsynonymous SNV 0.985 0 13 hm5C_associated_SNPs_27177 0 0 1 0 2 SF3B2 chr11:65824737 3'AG 65824737 Downstream 37bp
chr11 65824773 65824773 1 + C T LUAD 65824781 + 65824761 65824801 41 GCCCCACTCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCC GCCCCACTCCTATAGTTTTGCCCATGGGAGCCCCTGTTCCC < 41bp 1 0.379560780909505 1 0.1583571434021 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824781 chr11:65824773 nonsynonymous SNV 0.985 0 13 hm5C_associated_SNPs_27177 0 0 1 0 2 SF3B2 chr11:65824846 5'GT 65824846 Upstream 74bp
chr11 65824773 65824773 1 + C T LUAD 65824782 + 65824762 65824802 41 CCCCACTCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCCC CCCCACTCCTATAGTTTTGCCCATGGGAGCCCCTGTTCCCC < 41bp 1 0.259980970711903 1 0.138499230146408 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824782 chr11:65824773 nonsynonymous SNV 0.985 0 12 hm5C_associated_SNPs_27178 0 0 1 0 2 SF3B2 chr11:65824737 3'AG 65824737 Downstream 37bp
chr11 65824773 65824773 1 + C T LUAD 65824782 + 65824762 65824802 41 CCCCACTCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCCC CCCCACTCCTATAGTTTTGCCCATGGGAGCCCCTGTTCCCC < 41bp 1 0.259980970711903 1 0.138499230146408 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824782 chr11:65824773 nonsynonymous SNV 0.985 0 12 hm5C_associated_SNPs_27178 0 0 1 0 2 SF3B2 chr11:65824846 5'GT 65824846 Upstream 74bp
chr3 25542753 25542753 1 + C T LUAD 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACTAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT < 41bp 1 0.280208805657712 1 0.0811055600643158 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542753 synonymous SNV . 0 3 hm5C_associated_SNPs_27181 0 0 1 0 2 RARB chr3:25542673 3'AG 25542673 Downstream 81bp
chr3 25542753 25542753 1 + C T LUAD 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACTAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT < 41bp 1 0.280208805657712 1 0.0811055600643158 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542753 synonymous SNV . 0 3 hm5C_associated_SNPs_27181 0 0 1 0 2 RARB chr3:25542814 5'GT 25542814 Upstream 62bp
chr22 44368118 44368118 1 + G T LUAD 44368123 + 44368103 44368143 41 TTTTTTTATTTAGGTGATGACGCACTTCCAAATGGGTTAGA TTTTTTTATTTAGGTTATGACGCACTTCCAAATGGGTTAGA < 41bp 1 0.161437310038381 1 0.130294263362885 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44368123 chr22:44368118 nonsynonymous SNV 0.976 1 16 hm5C_associated_SNPs_27182 0 0 1 0 1 SAMM50 chr22:44368116 3'AG 44368116 Downstream 3bp
chr1 223934731 223934731 1 + G T LUAD 223934719 + 223934699 223934739 41 GATCAACGGATGCTATGAAGCGCTATCAGGGGGTGCCACCA GATCAACGGATGCTATGAAGCGCTATCAGGGGTTGCCACCA < 41bp 1 0.778550684274527 1 0.591277658939362 experiment 0.442898631450946 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223934719 chr1:223934731 nonsynonymous SNV 0.991 5 33 hm5C_associated_SNPs_27183 0 0 1 0 1 CAPN2 chr1:223934699 3'AG 223934699 Downstream 33bp
chr1 223934731 223934731 1 + G T LUAD 223934721 + 223934701 223934741 41 TCAACGGATGCTATGAAGCGCTATCAGGGGGTGCCACCACT TCAACGGATGCTATGAAGCGCTATCAGGGGTTGCCACCACT < 41bp 1 0.0590191511510538 1 0.050122082233429 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223934721 chr1:223934731 nonsynonymous SNV 0.991 5 31 hm5C_associated_SNPs_27184 0 0 1 0 1 CAPN2 chr1:223934699 3'AG 223934699 Downstream 33bp
chr7 45662261 45662261 1 + G T LUAD 45662274 + 45662254 45662294 41 GTTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG GTTTCACTGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG < 41bp 1 0.389296674614441 1 0.607295036315918 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45662274 chr7:45662261 synonymous SNV . 0 8 hm5C_associated_SNPs_27186 0 0 1 0 2 ADCY1 chr7:45662231 3'AG 45662231 Downstream 31bp
chr7 45662261 45662261 1 + G T LUAD 45662274 + 45662254 45662294 41 GTTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG GTTTCACTGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG < 41bp 1 0.389296674614441 1 0.607295036315918 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45662274 chr7:45662261 synonymous SNV . 0 8 hm5C_associated_SNPs_27186 0 0 1 0 2 ADCY1 chr7:45662342 5'GT 45662342 Upstream 82bp
chr3 40499405 40499405 1 + G T LUAD 40499425 + 40499405 40499445 41 GGCCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAA TGCCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAA < 41bp 1 0.370258331320989 1 0.0497450530529022 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL14 ENSG00000188846 CDS Human protein_coding chr3:40499425 chr3:40499405 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_27187 0 0 1 0 1 RPL14 chr3:40499381 3'AG 40499381 Downstream 25bp
chr8 145150838 145150838 1 + C G LUAD 145150830 + 145150810 145150850 41 GGCAGGGGGTGCGGGGCTGGCCATGGCTCTGCATTCGGCTG GGCAGGGGGTGCGGGGCTGGCCATGGCTGTGCATTCGGCTG < 41bp 1 0.553238883476513 1 0.458281219005585 experiment 0.893522233046974 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145150830 chr8:145150838 nonsynonymous SNV 0.868 1 29 hm5C_associated_SNPs_27188 0 0 1 0 1 CYC1 chr8:145150932 5'GT 145150932 Upstream 95bp
chr8 48874123 48874123 1 + G A LUAD 48874104 + 48874084 48874124 41 GAGGATGCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA GAGGATGCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCAA < 41bp 1 0.171026644982051 1 0.0730916857719421 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874104 chr8:48874123 nonsynonymous SNV 0.735 0 40 hm5C_associated_SNPs_27190 0 0 1 0 1 MCM4 chr8:48874076 3'AG 48874076 Downstream 48bp
chr1 28169792 28169792 1 + G T LUAD 28169778 + 28169758 28169798 41 GAAATCTGGACATTCAAAGACCAAAGAGGAAGAGGAAGAAC GAAATCTGGACATTCAAAGACCAAAGAGGAAGAGTAAGAAC < 41bp 1 0.433826085066363 1 0.142889887094498 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28169778 chr1:28169792 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_27191 0 0 1 0 2 PPP1R8 chr1:28169697 3'AG 28169697 Downstream 96bp
chr1 28169792 28169792 1 + G T LUAD 28169778 + 28169758 28169798 41 GAAATCTGGACATTCAAAGACCAAAGAGGAAGAGGAAGAAC GAAATCTGGACATTCAAAGACCAAAGAGGAAGAGTAAGAAC < 41bp 1 0.433826085066363 1 0.142889887094498 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28169778 chr1:28169792 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_27191 0 0 1 0 2 PPP1R8 chr1:28169841 5'GT 28169841 Upstream 50bp
chr17 38450672 38450672 1 + G C LUAD 38450687 + 38450667 38450707 41 CTAGAGAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCT CTAGACAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCT < 41bp 1 0.513297253439372 1 0.271117269992828 experiment 0.973405493121256 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDC6 ENSG00000094804 CDS Human protein_coding chr17:38450687 chr17:38450672 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_27193 0 0 1 0 2 CDC6 chr17:38450616 3'AG 38450616 Downstream 57bp
chr17 38450672 38450672 1 + G C LUAD 38450687 + 38450667 38450707 41 CTAGAGAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCT CTAGACAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCT < 41bp 1 0.513297253439372 1 0.271117269992828 experiment 0.973405493121256 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDC6 ENSG00000094804 CDS Human protein_coding chr17:38450687 chr17:38450672 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_27193 0 0 1 0 2 CDC6 chr17:38450755 5'GT 38450755 Upstream 84bp
chr12 6646140 6646140 1 + G T LUAD 6646142 + 6646122 6646162 41 CGCTGAGTACGTCGTGGAGTCCACTGGCGTCTTCACCACCA CGCTGAGTACGTCGTGGATTCCACTGGCGTCTTCACCACCA < 41bp 1 0.499962499472605 1 0.291548937559128 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6646142 chr12:6646140 nonsynonymous SNV 0.984 2 19 hm5C_associated_SNPs_27195 0 0 1 0 2 GAPDH chr12:6646086 3'AG 6646086 Downstream 55bp
chr12 6646140 6646140 1 + G T LUAD 6646142 + 6646122 6646162 41 CGCTGAGTACGTCGTGGAGTCCACTGGCGTCTTCACCACCA CGCTGAGTACGTCGTGGATTCCACTGGCGTCTTCACCACCA < 41bp 1 0.499962499472605 1 0.291548937559128 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6646142 chr12:6646140 nonsynonymous SNV 0.984 2 19 hm5C_associated_SNPs_27195 0 0 1 0 2 GAPDH chr12:6646176 5'GT 6646176 Upstream 37bp
chr12 98941397 98941397 1 + G A LUAD 98941402 + 98941382 98941422 41 GCAGGCCGGCCATTAGAACTCAGTGATTTCAGGATGGAGGA GCAGGCCGGCCATTAAAACTCAGTGATTTCAGGATGGAGGA < 41bp 1 0.720580266485308 1 0.265827268362045 experiment 0.558839467029384 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMPO ENSG00000120802 CDS Human protein_coding chr12:98941402 chr12:98941397 nonsynonymous SNV 0.992 0 16 hm5C_associated_SNPs_27196 0 0 1 1 1 TMPO chr12:98941351 3'AG 98941351 Downstream 47bp
chr1 155029447 155029447 1 + C T LUAD 155029461 + 155029441 155029481 41 AGCATCCTGGGAGTCGCCTCCTCCATAGCCCATGAGTTGGG AGCATCTTGGGAGTCGCCTCCTCCATAGCCCATGAGTTGGG < 41bp 1 0.789239038694835 1 0.966972470283508 experiment 0.421521922610331 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155029461 chr1:155029447 synonymous SNV . 0 7 hm5C_associated_SNPs_27198 0 0 1 0 1 ADAM15 chr1:155029429 3'AG 155029429 Downstream 19bp
chr4 57180261 57180261 1 + G C LUAD 57180277 + 57180257 57180297 41 AACGGACACCCAGGCGAGGACAAGCCAACGTGGCACGAAGA AACGCACACCCAGGCGAGGACAAGCCAACGTGGCACGAAGA < 41bp 1 0.318903099631662 1 0.57067745923996 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57180277 chr4:57180261 nonsynonymous SNV 0.849 3 5 hm5C_associated_SNPs_27203 0 0 0 0 1 KIAA1211 chr4:57180206 3'AG 57180206 Downstream 56bp
chr1 40882768 40882768 1 + G T LUAD 40882766 + 40882746 40882786 41 AGCTGCAATGGAACCTTACTCAGGTAAGCTACCCCATTTTA AGCTGCAATGGAACCTTACTCATGTAAGCTACCCCATTTTA < 41bp 1 0.546870322351617 1 0.587926387786865 experiment 0.906259355296767 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMAP2 ENSG00000084070 CDS Human protein_coding chr1:40882766 chr1:40882768 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_27204 0 0 1 0 1 SMAP2 chr1:40882768 5'GT 40882768 Upstream 1bp
chr2 48738497 48738497 1 + A T LUAD 48738508 + 48738488 48738528 41 ACAACTACCAAGAGGAGTTACGAGGATCAGTTAAGTATGAT ACAACTACCTAGAGGAGTTACGAGGATCAGTTAAGTATGAT < 41bp 1 0.599166707416356 1 0.659791231155396 experiment 0.801666585167287 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPP1R21 ENSG00000162869 CDS Human protein_coding chr2:48738508 chr2:48738497 stopgain 1.000 1 10 hm5C_associated_SNPs_27205 0 0 1 0 1 PPP1R21 chr2:48738479 3'AG 48738479 Downstream 19bp
chr5 32093041 32093041 1 + G A LUAD 32093044 + 32093024 32093064 41 TTCTAGTCTCAGCGGGGGACCAGCAAAGATTACAGTCTGTT TTCTAGTCTCAGCGGGGAACCAGCAAAGATTACAGTCTGTT < 41bp 1 0.196581830035777 1 0.64102977514267 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32093044 chr5:32093041 nonsynonymous SNV 0.747 0 18 hm5C_associated_SNPs_27206 0 0 0 0 2 PDZD2 chr5:32093013 3'AG 32093013 Downstream 29bp
chr5 32093041 32093041 1 + G A LUAD 32093044 + 32093024 32093064 41 TTCTAGTCTCAGCGGGGGACCAGCAAAGATTACAGTCTGTT TTCTAGTCTCAGCGGGGAACCAGCAAAGATTACAGTCTGTT < 41bp 1 0.196581830035777 1 0.64102977514267 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32093044 chr5:32093041 nonsynonymous SNV 0.747 0 18 hm5C_associated_SNPs_27206 0 0 0 0 2 PDZD2 chr5:32093130 5'GT 32093130 Upstream 90bp
chr18 21474925 21474925 1 + A C LUAD 21474924 + 21474904 21474944 41 ACCTGGCCACCATGGGCGAGCAGCTCCGCCTGGTCAAGTCT ACCTGGCCACCATGGGCGAGCCGCTCCGCCTGGTCAAGTCT < 41bp 1 0.0710290626110899 1 0.0609461963176727 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21474924 chr18:21474925 nonsynonymous SNV 0.975 1 22 hm5C_associated_SNPs_27207 0 0 0 0 1 LAMA3 chr18:21474871 3'AG 21474871 Downstream 55bp
chr16 70573038 70573038 1 + C A LUAD 70573018 + 70572998 70573038 41 TCTCACCAGGTTACTGAGATCCGGCTCAAATATTTTGATAC TCTCACCAGGTTACTGAGATCCGGCTCAAATATTTTGATAA < 41bp 1 0.187386641749055 1 0.67575079202652 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70573018 chr16:70573038 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_27208 0 0 1 0 2 SF3B3 chr16:70573007 3'AG 70573007 Downstream 32bp
chr16 70573038 70573038 1 + C A LUAD 70573018 + 70572998 70573038 41 TCTCACCAGGTTACTGAGATCCGGCTCAAATATTTTGATAC TCTCACCAGGTTACTGAGATCCGGCTCAAATATTTTGATAA < 41bp 1 0.187386641749055 1 0.67575079202652 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70573018 chr16:70573038 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_27208 0 0 1 0 2 SF3B3 chr16:70573110 5'GT 70573110 Upstream 73bp
chr20 47711286 47711286 1 + C G LUAD 47711273 + 47711253 47711293 41 CTTTCTTCCAATCCAGGACTCCATTATTACAGTCTTTGATT CTTTCTTCCAATCCAGGACTCCATTATTACAGTGTTTGATT < 41bp 1 0.0438745858593639 1 0.0669434666633606 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CSE1L ENSG00000124207 CDS Human protein_coding chr20:47711273 chr20:47711286 nonsynonymous SNV 0.996 2 34 hm5C_associated_SNPs_27210 0 0 1 0 1 CSE1L chr20:47711269 3'AG 47711269 Downstream 18bp
chr7 128845610 128845610 1 + C A LUAD 128845621 + 128845601 128845641 41 ACCATGAGGCTTGGGGAGCCCACGTAGGTGTCTTGGGGACC ACCATGAGGATTGGGGAGCCCACGTAGGTGTCTTGGGGACC < 41bp 1 0.608089157378287 1 0.454896926879883 experiment 0.783821685243426 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SMO ENSG00000128602 CDS Human protein_coding chr7:128845621 chr7:128845610 nonsynonymous SNV 0.993 1 10 hm5C_associated_SNPs_27211 0 0 1 0 1 SMO chr7:128845623 5'GT 128845623 Upstream 14bp
chr7 100466171 100466171 1 + C A LUAD 100466155 + 100466135 100466175 41 CCTCCTGCCTACCGCACGGGCTCCCTGAAGCCAAATCCAGC CCTCCTGCCTACCGCACGGGCTCCCTGAAGCCAAATACAGC < 41bp 1 0.178326234068981 1 0.0270720422267914 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100466155 chr7:100466171 nonsynonymous SNV 0.005 0 37 hm5C_associated_SNPs_27212 0 0 1 0 1 TRIP6 chr7:100466117 3'AG 100466117 Downstream 55bp
chr3 101311551 101311551 1 + G C LUAD 101311550 + 101311530 101311570 41 ATAACCAGAAGCTGTGGGAGCGAAATATAAAATCTCATCTT ATAACCAGAAGCTGTGGGAGCCAAATATAAAATCTCATCTT < 41bp 1 0.493653087461195 1 0.442451387643814 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNP ENSG00000081154 CDS Human protein_coding chr3:101311550 chr3:101311551 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_27213 0 0 1 0 1 PCNP chr3:101311471 3'AG 101311471 Downstream 81bp
chr2 209190010 209190010 1 + G T LUAD 209190000 + 209189980 209190020 41 GTTTTTGTTTGTAGAACAAACCAAGACACTGATGTTTTTTG GTTTTTGTTTGTAGAACAAACCAAGACACTTATGTTTTTTG < 41bp 1 0.0862567002060634 1 0.18374490737915 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PIKFYVE ENSG00000115020 CDS Human protein_coding chr2:209190000 chr2:209190010 synonymous SNV . 0 31 hm5C_associated_SNPs_27214 0 0 1 0 1 PIKFYVE chr2:209189994 3'AG 209189994 Downstream 17bp
chr20 60768505 60768505 1 + G T LUAD 60768502 + 60768482 60768522 41 ACCTGCAAGGTGTTTCTCAGCAAGATTGAGGACCGTGTTTC ACCTGCAAGGTGTTTCTCAGCAATATTGAGGACCGTGTTTC < 41bp 1 0.475420189542996 1 0.0505549609661102 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTG2 ENSG00000101181 CDS Human protein_coding chr20:60768502 chr20:60768505 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_27215 0 0 1 0 1 MTG2 chr20:60768472 3'AG 60768472 Downstream 34bp
chr17 27074265 27074265 1 + C T LUAD 27074259 + 27074239 27074279 41 TCTTCAAGTGCCCTGAGGACCAGCTTCCTCTGGACTATGCC TCTTCAAGTGCCCTGAGGACCAGCTTTCTCTGGACTATGCC < 41bp 1 0.486515888941734 1 0.218199610710144 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TRAF4 ENSG00000076604 CDS Human protein_coding chr17:27074259 chr17:27074265 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_27216 0 0 1 0 2 TRAF4 chr17:27074231 3'AG 27074231 Downstream 35bp
chr17 27074265 27074265 1 + C T LUAD 27074259 + 27074239 27074279 41 TCTTCAAGTGCCCTGAGGACCAGCTTCCTCTGGACTATGCC TCTTCAAGTGCCCTGAGGACCAGCTTTCTCTGGACTATGCC < 41bp 1 0.486515888941734 1 0.218199610710144 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TRAF4 ENSG00000076604 CDS Human protein_coding chr17:27074259 chr17:27074265 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_27216 0 0 1 0 2 TRAF4 chr17:27074282 5'GT 27074282 Upstream 18bp
chr21 33887132 33887132 1 + G C LUAD 33887128 + 33887108 33887148 41 TCTCTTCCTCCTGCAGCCCACCCGGAGAGAGCTGCCCTGCT TCTCTTCCTCCTGCAGCCCACCCGCAGAGAGCTGCCCTGCT < 41bp 1 0.195046066661131 1 0.543396532535553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33887128 chr21:33887132 nonsynonymous SNV 0.962 4 25 hm5C_associated_SNPs_27217 0 0 0 1 1 EVA1C chr21:33887124 3'AG 33887124 Downstream 9bp
chr21 33887132 33887132 1 + G C LUAD 33887129 + 33887109 33887149 41 CTCTTCCTCCTGCAGCCCACCCGGAGAGAGCTGCCCTGCTG CTCTTCCTCCTGCAGCCCACCCGCAGAGAGCTGCCCTGCTG < 41bp 1 0.638728606085068 1 0.280873209238052 experiment 0.722542787829863 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33887129 chr21:33887132 nonsynonymous SNV 0.962 4 24 hm5C_associated_SNPs_27218 0 0 0 1 1 EVA1C chr21:33887124 3'AG 33887124 Downstream 9bp
chr21 33887132 33887132 1 + G C LUAD 33887130 + 33887110 33887150 41 TCTTCCTCCTGCAGCCCACCCGGAGAGAGCTGCCCTGCTGT TCTTCCTCCTGCAGCCCACCCGCAGAGAGCTGCCCTGCTGT < 41bp 1 0.642721813522434 1 0.532823145389557 experiment 0.714556372955132 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33887130 chr21:33887132 nonsynonymous SNV 0.962 4 23 hm5C_associated_SNPs_27219 0 0 0 1 1 EVA1C chr21:33887124 3'AG 33887124 Downstream 9bp
chr20 1905435 1905435 1 + C T LUAD 1905422 + 1905402 1905442 41 GTCCCTAGAGAACACTGGATCTAATGAACGGAACATCTATA GTCCCTAGAGAACACTGGATCTAATGAACGGAATATCTATA < 41bp 1 0.142256340803427 1 0.042150467634201 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1905422 chr20:1905435 synonymous SNV . 0 34 hm5C_associated_SNPs_27220 0 0 0 0 2 SIRPA chr20:1905410 3'AG 1905410 Downstream 26bp
chr20 1905435 1905435 1 + C T LUAD 1905422 + 1905402 1905442 41 GTCCCTAGAGAACACTGGATCTAATGAACGGAACATCTATA GTCCCTAGAGAACACTGGATCTAATGAACGGAATATCTATA < 41bp 1 0.142256340803427 1 0.042150467634201 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1905422 chr20:1905435 synonymous SNV . 0 34 hm5C_associated_SNPs_27220 0 0 0 0 2 SIRPA chr20:1905523 5'GT 1905523 Upstream 89bp
chr16 89620293 89620293 1 + C T LUAD 89620301 + 89620281 89620321 41 GCCCATCTCCTTCCCTGAGGCGCAGGAGGGCCTCATGGGCA GCCCATCTCCTTTCCTGAGGCGCAGGAGGGCCTCATGGGCA < 41bp 1 0.658683870895436 1 0.438875168561935 experiment 0.682632258209129 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPG7 ENSG00000197912 CDS Human protein_coding chr16:89620301 chr16:89620293 nonsynonymous SNV . 0 13 hm5C_associated_SNPs_27221 0 0 1 0 2 SPG7 chr16:89620202 3'AG 89620202 Downstream 92bp
chr16 89620293 89620293 1 + C T LUAD 89620301 + 89620281 89620321 41 GCCCATCTCCTTCCCTGAGGCGCAGGAGGGCCTCATGGGCA GCCCATCTCCTTTCCTGAGGCGCAGGAGGGCCTCATGGGCA < 41bp 1 0.658683870895436 1 0.438875168561935 experiment 0.682632258209129 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPG7 ENSG00000197912 CDS Human protein_coding chr16:89620301 chr16:89620293 nonsynonymous SNV . 0 13 hm5C_associated_SNPs_27221 0 0 1 0 2 SPG7 chr16:89620368 5'GT 89620368 Upstream 76bp
chr16 1889352 1889352 1 + G A LUAD 1889342 + 1889322 1889362 41 ATCAGTCAGATCAATCAGCACATGGAAACTGAGAAAGACAG ATCAGTCAGATCAATCAGCACATGGAAACTAAGAAAGACAG < 41bp 1 0.567446183888547 1 0.243174910545349 experiment 0.865107632222906 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MEIOB ENSG00000162039 CDS Human other chr16:1889342 chr16:1889352 synonymous SNV . 0 31 hm5C_associated_SNPs_27222 0 0 0 1 1 FAHD1;MEIOB chr16:1889263 3'AG 1889263 Downstream 90bp
chr19 11105607 11105607 1 + A C LUAD 11105627 + 11105607 11105647 41 ATGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACGAGCGG CTGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACGAGCGG < 41bp 1 0.634670587015048 1 0.670882403850555 experiment 0.730658825969904 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11105627 chr19:11105607 nonsynonymous SNV 0.902 4 1 hm5C_associated_SNPs_27223 0 0 1 0 1 SMARCA4 chr19:11105677 5'GT 11105677 Upstream 71bp
chr13 20233197 20233197 1 + G C LUAD 20233203 + 20233183 20233223 41 GGATGAAGTTGGAAGATTTCCAAAAGCACCTTGATGGGAAA GGATGAAGTTGGAACATTTCCAAAAGCACCTTGATGGGAAA < 41bp 1 0.755296149808944 1 0.82645320892334 experiment 0.489407700382112 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MPHOSPH8 ENSG00000196199 CDS Human protein_coding chr13:20233203 chr13:20233197 nonsynonymous SNV 0.760 4 15 hm5C_associated_SNPs_27224 0 0 1 0 2 MPHOSPH8 chr13:20233135 3'AG 20233135 Downstream 63bp
chr13 20233197 20233197 1 + G C LUAD 20233203 + 20233183 20233223 41 GGATGAAGTTGGAAGATTTCCAAAAGCACCTTGATGGGAAA GGATGAAGTTGGAACATTTCCAAAAGCACCTTGATGGGAAA < 41bp 1 0.755296149808944 1 0.82645320892334 experiment 0.489407700382112 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MPHOSPH8 ENSG00000196199 CDS Human protein_coding chr13:20233203 chr13:20233197 nonsynonymous SNV 0.760 4 15 hm5C_associated_SNPs_27224 0 0 1 0 2 MPHOSPH8 chr13:20233260 5'GT 20233260 Upstream 64bp
chr3 49736441 49736441 1 + G A LUAD 49736459 + 49736439 49736479 41 TTGAGAACCTGTCCAGGGGCCTGGGTATGGCCTACTTCCCA TTAAGAACCTGTCCAGGGGCCTGGGTATGGCCTACTTCCCA < 41bp 1 0.569239412065805 1 0.293868601322174 experiment 0.86152117586839 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49736459 chr3:49736441 nonsynonymous SNV 0.989 0 3 hm5C_associated_SNPs_27225 0 0 1 0 1 RNF123 chr3:49736413 3'AG 49736413 Downstream 29bp
chr11 71946456 71946456 1 + G A LUAD 71946459 + 71946439 71946479 41 GCTCCATGAAGGTGCGGGTGCCCACGGAGCGCCTGGGCACC GCTCCATGAAGGTGCGGATGCCCACGGAGCGCCTGGGCACC < 41bp 1 0.159401092668546 1 0.117874532938004 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946459 chr11:71946456 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_27226 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 40bp
chr11 71946456 71946456 1 + G A LUAD 71946460 + 71946440 71946480 41 CTCCATGAAGGTGCGGGTGCCCACGGAGCGCCTGGGCACCC CTCCATGAAGGTGCGGATGCCCACGGAGCGCCTGGGCACCC < 41bp 1 0.360455786910173 1 0.0704125165939331 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946460 chr11:71946456 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_27227 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 40bp
chr11 71946456 71946456 1 + G A LUAD 71946476 + 71946456 71946496 41 GTGCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGG ATGCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGG < 41bp 1 0.386139678700002 1 0.0423650145530701 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946476 chr11:71946456 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_27228 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 40bp
chrX 17705957 17705957 1 + C A LUAD 17705955 + 17705935 17705975 41 CTTCCTCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGC CTTCCTCCCAGCCACAAGGCCAACCTGCGTGGAGGAGCTGC < 41bp 1 0.313026928850147 1 0.0380216538906097 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NHS ENSG00000188158 CDS Human protein_coding chrX:17705955 chrX:17705957 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_27229 0 0 0 0 2 NHS chrX:17705862 3'AG 17705862 Downstream 96bp
chrX 17705957 17705957 1 + C A LUAD 17705955 + 17705935 17705975 41 CTTCCTCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGC CTTCCTCCCAGCCACAAGGCCAACCTGCGTGGAGGAGCTGC < 41bp 1 0.313026928850147 1 0.0380216538906097 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NHS ENSG00000188158 CDS Human protein_coding chrX:17705955 chrX:17705957 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_27229 0 0 0 0 2 NHS chrX:17706014 5'GT 17706014 Upstream 58bp
chrX 17705957 17705957 1 + C A LUAD 17705959 + 17705939 17705979 41 CTCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGCACCG CTCCCAGCCACAAGGCCAACCTGCGTGGAGGAGCTGCACCG < 41bp 1 0.740584031920559 1 0.750118613243103 experiment 0.518831936158883 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NHS ENSG00000188158 CDS Human protein_coding chrX:17705959 chrX:17705957 nonsynonymous SNV 0.999 3 19 hm5C_associated_SNPs_27230 0 0 0 0 2 NHS chrX:17705862 3'AG 17705862 Downstream 96bp
chrX 17705957 17705957 1 + C A LUAD 17705959 + 17705939 17705979 41 CTCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGCACCG CTCCCAGCCACAAGGCCAACCTGCGTGGAGGAGCTGCACCG < 41bp 1 0.740584031920559 1 0.750118613243103 experiment 0.518831936158883 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NHS ENSG00000188158 CDS Human protein_coding chrX:17705959 chrX:17705957 nonsynonymous SNV 0.999 3 19 hm5C_associated_SNPs_27230 0 0 0 0 2 NHS chrX:17706014 5'GT 17706014 Upstream 58bp
chr19 50002824 50002824 1 + A G LUAD 50002809 + 50002789 50002829 41 TCGTCACAGTGGGCGAGTGCCGGCCTCTGAGCAAGACAGTG TCGTCACAGTGGGCGAGTGCCGGCCTCTGAGCAAGGCAGTG < 41bp 1 0.585290974165466 1 0.412686616182327 experiment 0.829418051669068 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS11 ENSG00000142534 CDS Human protein_coding chr19:50002809 chr19:50002824 nonsynonymous SNV 0.994 2 36 hm5C_associated_SNPs_27231 0 0 1 0 1 RPS11 chr19:50002769 3'AG 50002769 Downstream 56bp
chr3 39110337 39110337 1 + G T LUAD 39110322 + 39110302 39110342 41 GGCCATGAATCAACTGGGAACAATCATTGTATCAGGGTCCA GGCCATGAATCAACTGGGAACAATCATTGTATCAGTGTCCA < 41bp 1 0.0835190685286054 1 0.264894366264343 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39110322 chr3:39110337 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_27232 0 0 0 1 2 WDR48 chr3:39110262 3'AG 39110262 Downstream 76bp
chr3 39110337 39110337 1 + G T LUAD 39110322 + 39110302 39110342 41 GGCCATGAATCAACTGGGAACAATCATTGTATCAGGGTCCA GGCCATGAATCAACTGGGAACAATCATTGTATCAGTGTCCA < 41bp 1 0.0835190685286054 1 0.264894366264343 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39110322 chr3:39110337 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_27232 0 0 0 1 2 WDR48 chr3:39110350 5'GT 39110350 Upstream 14bp
chr3 39110337 39110337 1 + G T LUAD 39110326 + 39110306 39110346 41 ATGAATCAACTGGGAACAATCATTGTATCAGGGTCCACTGA ATGAATCAACTGGGAACAATCATTGTATCAGTGTCCACTGA < 41bp 1 0.325672653627291 1 0.245504081249237 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39110326 chr3:39110337 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_27233 0 0 0 1 2 WDR48 chr3:39110262 3'AG 39110262 Downstream 76bp
chr3 39110337 39110337 1 + G T LUAD 39110326 + 39110306 39110346 41 ATGAATCAACTGGGAACAATCATTGTATCAGGGTCCACTGA ATGAATCAACTGGGAACAATCATTGTATCAGTGTCCACTGA < 41bp 1 0.325672653627291 1 0.245504081249237 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39110326 chr3:39110337 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_27233 0 0 0 1 2 WDR48 chr3:39110350 5'GT 39110350 Upstream 14bp
chr2 99999328 99999328 1 + G A LUAD 99999336 + 99999316 99999356 41 CCCCAGACAATTGAGTCTATCAACCTTCTCAAATCTAAAAA CCCCAGACAATTAAGTCTATCAACCTTCTCAAATCTAAAAA < 41bp 1 0.335344668581663 1 0.219954371452332 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:99999336 chr2:99999328 nonsynonymous SNV 0.997 3 13 hm5C_associated_SNPs_27234 0 0 1 0 2 EIF5B chr2:99999243 3'AG 99999243 Downstream 86bp
chr2 99999328 99999328 1 + G A LUAD 99999336 + 99999316 99999356 41 CCCCAGACAATTGAGTCTATCAACCTTCTCAAATCTAAAAA CCCCAGACAATTAAGTCTATCAACCTTCTCAAATCTAAAAA < 41bp 1 0.335344668581663 1 0.219954371452332 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:99999336 chr2:99999328 nonsynonymous SNV 0.997 3 13 hm5C_associated_SNPs_27234 0 0 1 0 2 EIF5B chr2:99999384 5'GT 99999384 Upstream 57bp
chr1 193205393 193205393 1 + G T LUAD 193205390 + 193205370 193205410 41 ACTTTTCTACTTGTAGGGACCGCGTTGTAGCCGTTTTTGTG ACTTTTCTACTTGTAGGGACCGCTTTGTAGCCGTTTTTGTG < 41bp 1 0.314799565388555 1 0.0590779781341553 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC73 ENSG00000134371 CDS Human protein_coding chr1:193205390 chr1:193205393 nonsynonymous SNV 0.843 4 24 hm5C_associated_SNPs_27235 0 0 1 0 2 CDC73 chr1:193205386 3'AG 193205386 Downstream 8bp
chr1 193205393 193205393 1 + G T LUAD 193205390 + 193205370 193205410 41 ACTTTTCTACTTGTAGGGACCGCGTTGTAGCCGTTTTTGTG ACTTTTCTACTTGTAGGGACCGCTTTGTAGCCGTTTTTGTG < 41bp 1 0.314799565388555 1 0.0590779781341553 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC73 ENSG00000134371 CDS Human protein_coding chr1:193205390 chr1:193205393 nonsynonymous SNV 0.843 4 24 hm5C_associated_SNPs_27235 0 0 1 0 2 CDC73 chr1:193205486 5'GT 193205486 Upstream 94bp
chr20 42695416 42695416 1 + C A LUAD 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCCCCAGCAGCTCGGGATCCTGCTAACCTGGCCCATCCAA < 41bp 1 0.46539557467149 1 0.371286571025848 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695416 stopgain 0.911 0 26 hm5C_associated_SNPs_27236 0 0 1 0 2 TOX2 chr20:42695370 3'AG 42695370 Downstream 47bp
chr20 42695416 42695416 1 + C A LUAD 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCCCCAGCAGCTCGGGATCCTGCTAACCTGGCCCATCCAA < 41bp 1 0.46539557467149 1 0.371286571025848 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695416 stopgain 0.911 0 26 hm5C_associated_SNPs_27236 0 0 1 0 2 TOX2 chr20:42695497 5'GT 42695497 Upstream 82bp
chr20 37570740 37570740 1 + G T LUAD 37570736 + 37570716 37570756 41 TCTCAATTTCTGGATATGTGCATGGATCTGAAAGTTCATCC TCTCAATTTCTGGATATGTGCATGTATCTGAAAGTTCATCC < 41bp 1 0.269590560108597 1 0.0376361310482025 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM83D ENSG00000101447 CDS Human protein_coding chr20:37570736 chr20:37570740 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_27239 0 0 1 0 1 FAM83D chr20:37570769 5'GT 37570769 Upstream 30bp
chr3 45565506 45565506 1 + C T LUAD 45565503 + 45565483 45565523 41 CCTTAGCAAGCCTCTCAGAGCGTCATTCTCCACAGCCCCGA CCTTAGCAAGCCTCTCAGAGCGTTATTCTCCACAGCCCCGA < 41bp 1 0.331716461800918 1 0.0400277972221375 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LARS2 ENSG00000011376 CDS Human protein_coding chr3:45565503 chr3:45565506 synonymous SNV . 0 24 hm5C_associated_SNPs_27244 0 0 1 0 2 LARS2 chr3:45565489 3'AG 45565489 Downstream 18bp
chr3 45565506 45565506 1 + C T LUAD 45565503 + 45565483 45565523 41 CCTTAGCAAGCCTCTCAGAGCGTCATTCTCCACAGCCCCGA CCTTAGCAAGCCTCTCAGAGCGTTATTCTCCACAGCCCCGA < 41bp 1 0.331716461800918 1 0.0400277972221375 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LARS2 ENSG00000011376 CDS Human protein_coding chr3:45565503 chr3:45565506 synonymous SNV . 0 24 hm5C_associated_SNPs_27244 0 0 1 0 2 LARS2 chr3:45565600 5'GT 45565600 Upstream 95bp
chr2 99156082 99156082 1 + C G LUAD 99156084 + 99156064 99156104 41 GATGGCAGAGAGCGTGCTCTCCCTGCACGTGCCCCGGCAGT GATGGCAGAGAGCGTGCTGTCCCTGCACGTGCCCCGGCAGT < 41bp 1 0.313205987302113 1 0.406590700149536 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99156084 chr2:99156082 synonymous SNV . 0 19 hm5C_associated_SNPs_27245 0 0 1 0 1 INPP4A chr2:99156138 5'GT 99156138 Upstream 57bp
chr3 184045480 184045480 1 + C G LUAD 184045472 + 184045452 184045492 41 AGGCTATCATTGAGGAATATCTCCATCTCAATGACATGAAA AGGCTATCATTGAGGAATATCTCCATCTGAATGACATGAAA < 41bp 1 0.762907334318449 1 0.923636436462402 experiment 0.474185331363101 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184045472 chr3:184045480 synonymous SNV . 0 29 hm5C_associated_SNPs_27246 0 0 1 0 1 EIF4G1 chr3:184045492 5'GT 184045492 Upstream 13bp
chr19 18729267 18729267 1 + C T LUAD 18729284 + 18729264 18729304 41 ACCCTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCCAGGT ACCTTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCCAGGT < 41bp 1 0.226944376185457 1 0.154537200927734 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM59L ENSG00000105696 CDS Human protein_coding chr19:18729284 chr19:18729267 synonymous SNV . 0 4 hm5C_associated_SNPs_27259 0 0 1 0 2 TMEM59L chr19:18729185 3'AG 18729185 Downstream 83bp
chr19 18729267 18729267 1 + C T LUAD 18729284 + 18729264 18729304 41 ACCCTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCCAGGT ACCTTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCCAGGT < 41bp 1 0.226944376185457 1 0.154537200927734 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM59L ENSG00000105696 CDS Human protein_coding chr19:18729284 chr19:18729267 synonymous SNV . 0 4 hm5C_associated_SNPs_27259 0 0 1 0 2 TMEM59L chr19:18729302 5'GT 18729302 Upstream 36bp
chr5 72201204 72201204 1 + A G LUAD 72201196 + 72201176 72201216 41 GTTTCTCTGACCAGTTTCCTCTTCCCTTAAAAGAGCGTCTT GTTTCTCTGACCAGTTTCCTCTTCCCTTGAAAGAGCGTCTT < 41bp 1 0.209679838875174 1 0.30716672539711 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72201196 chr5:72201204 synonymous SNV . 0 29 hm5C_associated_SNPs_27260 0 0 1 0 1 TNPO1 chr5:72201130 3'AG 72201130 Downstream 75bp
chr17 41561531 41561531 1 + G T LUAD 41561537 + 41561517 41561557 41 CTGGACAATCACTTGGGGATCAACGACAAGGACCTTGGTGA CTGGACAATCACTTTGGGATCAACGACAAGGACCTTGGTGA < 41bp 1 0.524310974743461 1 0.226370811462402 experiment 0.951378050513078 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41561537 chr17:41561531 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_27261 0 0 1 0 1 DHX8 chr17:41561553 5'GT 41561553 Upstream 23bp
chr3 40503438 40503438 1 + A G LUAD 40503435 + 40503415 40503455 41 ATTGATAATTTTCAGAGGAACAGAATAATCAAGAATGAAGT ATTGATAATTTTCAGAGGAACAGGATAATCAAGAATGAAGT < 41bp 1 0.774041823437335 1 0.460309475660324 experiment 0.451916353125331 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL14 ENSG00000188846 CDS Human other chr3:40503435 chr3:40503438 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_27262 0 0 1 0 1 RPL14 chr3:40503430 3'AG 40503430 Downstream 9bp
chr16 57144694 57144694 1 + G T LUAD 57144680 + 57144660 57144700 41 CCACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCCC CCACATACCCAGTGGGGGTGCCCCAGCAGCGGGGTCAGCCC < 41bp 1 0.613510352725948 1 0.226213991641998 experiment 0.772979294548104 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144680 chr16:57144694 nonsynonymous SNV 0.039 0 35 hm5C_associated_SNPs_27263 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 75bp
chr16 57144694 57144694 1 + G T LUAD 57144681 + 57144661 57144701 41 CACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCCCC CACATACCCAGTGGGGGTGCCCCAGCAGCGGGGTCAGCCCC < 41bp 1 0.261950017108285 1 0.242058128118515 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144681 chr16:57144694 nonsynonymous SNV 0.039 0 34 hm5C_associated_SNPs_27264 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 75bp
chr16 57144694 57144694 1 + G T LUAD 57144682 + 57144662 57144702 41 ACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCCCCC ACATACCCAGTGGGGGTGCCCCAGCAGCGGGGTCAGCCCCC < 41bp 1 0.395835932078419 1 0.307772666215897 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144682 chr16:57144694 nonsynonymous SNV 0.039 0 33 hm5C_associated_SNPs_27265 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 75bp
chr16 57144694 57144694 1 + G T LUAD 57144695 + 57144675 57144715 41 GGGTGCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGT GGGTGCCCCAGCAGCGGGGTCAGCCCCCATGGGCCCCCAGT < 41bp 1 0.291493255979679 1 0.120512664318085 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144695 chr16:57144694 nonsynonymous SNV 0.039 0 20 hm5C_associated_SNPs_27266 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 75bp
chr16 57144694 57144694 1 + G T LUAD 57144698 + 57144678 57144718 41 TGCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATT TGCCCCAGCAGCGGGGTCAGCCCCCATGGGCCCCCAGTATT < 41bp 1 0.243877921745363 1 0.215398162603378 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144698 chr16:57144694 nonsynonymous SNV 0.039 0 17 hm5C_associated_SNPs_27267 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 75bp
chr16 57144694 57144694 1 + G T LUAD 57144699 + 57144679 57144719 41 GCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATTG GCCCCAGCAGCGGGGTCAGCCCCCATGGGCCCCCAGTATTG < 41bp 1 0.720631892731441 1 0.795078098773956 experiment 0.558736214537117 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144699 chr16:57144694 nonsynonymous SNV 0.039 0 16 hm5C_associated_SNPs_27268 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 75bp
chr16 57144694 57144694 1 + G T LUAD 57144700 + 57144680 57144720 41 CCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATTGC CCCCAGCAGCGGGGTCAGCCCCCATGGGCCCCCAGTATTGC < 41bp 1 0.325308030303494 1 0.414365977048874 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144700 chr16:57144694 nonsynonymous SNV 0.039 0 15 hm5C_associated_SNPs_27269 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 75bp
chr16 57144694 57144694 1 + G T LUAD 57144701 + 57144681 57144721 41 CCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATTGCG CCCAGCAGCGGGGTCAGCCCCCATGGGCCCCCAGTATTGCG < 41bp 1 0.227536954302882 1 0.419857144355774 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144701 chr16:57144694 nonsynonymous SNV 0.039 0 14 hm5C_associated_SNPs_27270 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 75bp
chr18 19209061 19209061 1 + C T LUAD 19209067 + 19209047 19209087 41 GAAGAGGAAGAGGACGTGGCCGTGGCAGAGGAAGAGGGGGT GAAGAGGAAGAGGATGTGGCCGTGGCAGAGGAAGAGGGGGT < 41bp 1 0.708350692544653 1 0.231335401535034 experiment 0.583298614910694 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRPD1 ENSG00000167088 CDS Human protein_coding chr18:19209067 chr18:19209061 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_27273 0 0 1 0 1 SNRPD1 chr18:19209023 3'AG 19209023 Downstream 39bp
chr19 33465037 33465037 1 + G C LUAD 33465022 + 33465002 33465042 41 ACCCGGATGAGTGAACAATACTTCCCAGCCCTACAGAAGTT ACCCGGATGAGTGAACAATACTTCCCAGCCCTACACAAGTT < 41bp 1 0.177457048984596 1 0.125192821025848 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33465022 chr19:33465037 nonsynonymous SNV 0.990 3 36 hm5C_associated_SNPs_27274 0 0 0 0 2 FAAP24 chr19:33464966 3'AG 33464966 Downstream 72bp
chr19 33465037 33465037 1 + G C LUAD 33465022 + 33465002 33465042 41 ACCCGGATGAGTGAACAATACTTCCCAGCCCTACAGAAGTT ACCCGGATGAGTGAACAATACTTCCCAGCCCTACACAAGTT < 41bp 1 0.177457048984596 1 0.125192821025848 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33465022 chr19:33465037 nonsynonymous SNV 0.990 3 36 hm5C_associated_SNPs_27274 0 0 0 0 2 FAAP24 chr19:33465118 5'GT 33465118 Upstream 82bp
chr1 150280578 150280578 1 + C G LUAD 150280582 + 150280562 150280602 41 AAAGCTATGAAAGGTGCCGGCGGATCTACAACATGGAAATG AAAGCTATGAAAGGTGGCGGCGGATCTACAACATGGAAATG < 41bp 1 0.423086682641558 1 0.358746081590652 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MRPS21 ENSG00000187145 CDS Human other chr1:150280582 chr1:150280578 nonsynonymous SNV 0.995 2 17 hm5C_associated_SNPs_27276 0 0 1 0 1 MRPS21 chr1:150280482 3'AG 150280482 Downstream 97bp
chr11 108004609 108004609 1 + G A LUAD 108004618 + 108004598 108004638 41 AGCCTTTCCTTGCTGCCAGCCACTAAGCTTGGTTCCATTGC AGCCTTTCCTTACTGCCAGCCACTAAGCTTGGTTCCATTGC < 41bp 1 0.477153572682737 1 0.114433526992798 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACAT1 ENSG00000075239 CDS Human protein_coding chr11:108004618 chr11:108004609 synonymous SNV . 0 12 hm5C_associated_SNPs_27277 0 0 1 0 2 ACAT1 chr11:108004547 3'AG 108004547 Downstream 63bp
chr11 108004609 108004609 1 + G A LUAD 108004618 + 108004598 108004638 41 AGCCTTTCCTTGCTGCCAGCCACTAAGCTTGGTTCCATTGC AGCCTTTCCTTACTGCCAGCCACTAAGCTTGGTTCCATTGC < 41bp 1 0.477153572682737 1 0.114433526992798 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACAT1 ENSG00000075239 CDS Human protein_coding chr11:108004618 chr11:108004609 synonymous SNV . 0 12 hm5C_associated_SNPs_27277 0 0 1 0 2 ACAT1 chr11:108004664 5'GT 108004664 Upstream 56bp
chr19 52714679 52714679 1 + C T LUAD 52714692 + 52714672 52714712 41 CGCACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCG CGCACCTTGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCG < 41bp 1 0.457373443299215 1 0.0917878746986389 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52714692 chr19:52714679 nonsynonymous SNV 0.996 4 8 hm5C_associated_SNPs_27278 0 0 1 0 1 PPP2R1A chr19:52714745 5'GT 52714745 Upstream 67bp
chr19 52714679 52714679 1 + C T LUAD 52714695 + 52714675 52714715 41 ACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCGAGT ACCTTGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCGAGT < 41bp 1 0.758389908777514 1 0.863255977630615 experiment 0.483220182444972 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52714695 chr19:52714679 nonsynonymous SNV 0.996 4 5 hm5C_associated_SNPs_27279 0 0 1 0 1 PPP2R1A chr19:52714745 5'GT 52714745 Upstream 67bp
chr6 43171614 43171614 1 + G A LUAD 43171598 + 43171578 43171618 41 CTGTTTGTTCCCAGACTGAACAGGGTTTTGCGCCACGAGCA CTGTTTGTTCCCAGACTGAACAGGGTTTTGCGCCACAAGCA < 41bp 1 0.639481297113255 1 0.776929140090942 experiment 0.72103740577349 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43171598 chr6:43171614 nonsynonymous SNV 0.923 4 37 hm5C_associated_SNPs_27280 0 0 0 0 1 CUL9 chr6:43171592 3'AG 43171592 Downstream 23bp
chr5 14291313 14291313 1 + G A LUAD 14291323 + 14291303 14291343 41 TCCAGCTGAGGCTGTTTGAACAGGATGCTGAGAAGGTAAAG TCCAGCTGAGACTGTTTGAACAGGATGCTGAGAAGGTAAAG < 41bp 1 0.50990279708756 1 0.436176300048828 experiment 0.980194405824879 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14291323 chr5:14291313 synonymous SNV . 0 11 hm5C_associated_SNPs_27281 0 0 1 0 1 TRIO chr5:14291337 5'GT 14291337 Upstream 25bp
chr7 142460304 142460304 1 + G T LUAD 142460286 + 142460266 142460306 41 TTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTG TTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGCATTG < 41bp 1 0.120770642473417 1 0.257851839065552 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460286 chr7:142460304 nonsynonymous SNV 0.045 3 39 hm5C_associated_SNPs_27283 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 23bp
chr7 142460304 142460304 1 + G T LUAD 142460289 + 142460269 142460309 41 CTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCT CTGATCCTCACAGCCGACTACCCAGACGAGCTGCATTGCCT < 41bp 1 0.115619473066781 1 0.287648111581802 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460289 chr7:142460304 nonsynonymous SNV 0.045 3 36 hm5C_associated_SNPs_27284 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 23bp
chr7 142460304 142460304 1 + G T LUAD 142460290 + 142460270 142460310 41 TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTG TGATCCTCACAGCCGACTACCCAGACGAGCTGCATTGCCTG < 41bp 1 0.446684295336164 1 0.462962359189987 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460290 chr7:142460304 nonsynonymous SNV 0.045 3 35 hm5C_associated_SNPs_27285 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 23bp
chr7 142460304 142460304 1 + G T LUAD 142460291 + 142460271 142460311 41 GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGG GATCCTCACAGCCGACTACCCAGACGAGCTGCATTGCCTGG < 41bp 1 0.44933063287813 1 0.396477609872818 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460291 chr7:142460304 nonsynonymous SNV 0.045 3 34 hm5C_associated_SNPs_27286 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 23bp
chr7 142460304 142460304 1 + G T LUAD 142460295 + 142460275 142460315 41 CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGC CTCACAGCCGACTACCCAGACGAGCTGCATTGCCTGGATGC < 41bp 1 0.346306781142337 1 0.335082918405533 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460295 chr7:142460304 nonsynonymous SNV 0.045 3 30 hm5C_associated_SNPs_27287 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 23bp
chr7 142460304 142460304 1 + G T LUAD 142460299 + 142460279 142460319 41 CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT CAGCCGACTACCCAGACGAGCTGCATTGCCTGGATGCTCCT < 41bp 1 0.624890486331225 1 0.203671932220459 experiment 0.750219027337551 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460299 chr7:142460304 nonsynonymous SNV 0.045 3 26 hm5C_associated_SNPs_27288 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 23bp
chr7 142460304 142460304 1 + G T LUAD 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGACGAGCTGCATTGCCTGGATGCTCCTGTG < 41bp 1 0.0799058528411721 1 0.0304088294506073 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460304 nonsynonymous SNV 0.045 3 23 hm5C_associated_SNPs_27289 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 23bp
chr7 142460304 142460304 1 + G T LUAD 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCATTGCCTGGATGCTCCTGTGCTGAG < 41bp 1 0.29189642859434 1 0.209305047988892 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460304 nonsynonymous SNV 0.045 3 18 hm5C_associated_SNPs_27290 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 23bp
chr7 142460304 142460304 1 + G T LUAD 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCATTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA < 41bp 1 0.422517382567507 1 0.14084005355835 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460304 nonsynonymous SNV 0.045 3 10 hm5C_associated_SNPs_27291 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 23bp
chr7 142460304 142460304 1 + G T LUAD 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCATTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG < 41bp 1 0.19436171002941 1 0.145373106002808 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460304 nonsynonymous SNV 0.045 3 8 hm5C_associated_SNPs_27292 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 23bp
chr7 142460304 142460304 1 + G T LUAD 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCATTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT < 41bp 1 0.422616089178404 1 0.0921176373958588 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460304 nonsynonymous SNV 0.045 3 7 hm5C_associated_SNPs_27293 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 23bp
chr7 142460304 142460304 1 + G T LUAD 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA ATTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA < 41bp 1 0.498250921115815 1 0.0542798042297363 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460304 nonsynonymous SNV 0.045 3 2 hm5C_associated_SNPs_27294 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 23bp
chr1 978663 978663 1 + G C LUAD 978683 + 978663 978703 41 GCGACGTGTGCTGTGAAGAACGGGCAGGCAGCGTGTGAATG CCGACGTGTGCTGTGAAGAACGGGCAGGCAGCGTGTGAATG < 41bp 1 0.347066666964315 1 0.167671471834183 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:978683 chr1:978663 nonsynonymous SNV 0.050 4 1 hm5C_associated_SNPs_27295 0 0 1 0 1 AGRN chr1:978619 3'AG 978619 Downstream 45bp
chr2 220355624 220355624 1 + A C LUAD 220355629 + 220355609 220355649 41 AGTGCCCAGCCCTACAACCCCCAGGCCCTTAGGCCCCTTGG AGTGCCCAGCCCTACCACCCCCAGGCCCTTAGGCCCCTTGG < 41bp 1 0.173697229462671 1 0.412674874067307 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220355629 chr2:220355624 nonsynonymous SNV 0.996 3 16 hm5C_associated_SNPs_27296 0 0 0 0 1 SPEG chr2:220355678 5'GT 220355678 Upstream 55bp
chr2 220355624 220355624 1 + A C LUAD 220355636 + 220355616 220355656 41 AGCCCTACAACCCCCAGGCCCTTAGGCCCCTTGGCCACCGC AGCCCTACCACCCCCAGGCCCTTAGGCCCCTTGGCCACCGC < 41bp 1 0.105372354980879 1 0.0644210278987885 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220355636 chr2:220355624 nonsynonymous SNV 0.996 3 9 hm5C_associated_SNPs_27297 0 0 0 0 1 SPEG chr2:220355678 5'GT 220355678 Upstream 55bp
chr2 220355624 220355624 1 + A C LUAD 220355643 + 220355623 220355663 41 CAACCCCCAGGCCCTTAGGCCCCTTGGCCACCGCACGGGCA CCACCCCCAGGCCCTTAGGCCCCTTGGCCACCGCACGGGCA < 41bp 1 0.0262092920865109 1 0.0546150207519531 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220355643 chr2:220355624 nonsynonymous SNV 0.996 3 2 hm5C_associated_SNPs_27298 0 0 0 0 1 SPEG chr2:220355678 5'GT 220355678 Upstream 55bp
chr1 78001629 78001629 1 + A T LUAD 78001612 + 78001592 78001632 41 CTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGTGGACGACAC CTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGTGGACGTCAC < 41bp 1 0.383866870956103 1 0.510925948619843 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001612 chr1:78001629 nonsynonymous SNV 0.001 2 38 hm5C_associated_SNPs_27299 0 0 0 0 1 AK5 chr1:78001532 3'AG 78001532 Downstream 98bp
chr14 53175517 53175517 1 + G C LUAD 53175498 + 53175478 53175518 41 CTAGTCATTGTTAAAGCTACCAATGGACCAAGATATGTTGT CTAGTCATTGTTAAAGCTACCAATGGACCAAGATATGTTCT < 41bp 1 0.18424390411271 1 0.66331672668457 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMC6 ENSG00000100519 CDS Human protein_coding chr14:53175498 chr14:53175517 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_27300 0 0 1 0 2 PSMC6 chr14:53175482 3'AG 53175482 Downstream 36bp
chr14 53175517 53175517 1 + G C LUAD 53175498 + 53175478 53175518 41 CTAGTCATTGTTAAAGCTACCAATGGACCAAGATATGTTGT CTAGTCATTGTTAAAGCTACCAATGGACCAAGATATGTTCT < 41bp 1 0.18424390411271 1 0.66331672668457 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMC6 ENSG00000100519 CDS Human protein_coding chr14:53175498 chr14:53175517 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_27300 0 0 1 0 2 PSMC6 chr14:53175534 5'GT 53175534 Upstream 18bp
chr22 18567976 18567976 1 + C T LUAD 18567978 + 18567958 18567998 41 CTGCCCTTCAAAAAGAGTCTCCTGGCTGCCTTGATCCTCTG CTGCCCTTCAAAAAGAGTTTCCTGGCTGCCTTGATCCTCTG < 41bp 1 0.187402541826571 1 0.0781746506690979 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PEX26 ENSG00000215193 CDS Human protein_coding chr22:18567978 chr22:18567976 nonsynonymous SNV 0.964 1 19 hm5C_associated_SNPs_27301 0 0 1 0 2 PEX26 chr22:18567878 3'AG 18567878 Downstream 99bp
chr22 18567976 18567976 1 + C T LUAD 18567978 + 18567958 18567998 41 CTGCCCTTCAAAAAGAGTCTCCTGGCTGCCTTGATCCTCTG CTGCCCTTCAAAAAGAGTTTCCTGGCTGCCTTGATCCTCTG < 41bp 1 0.187402541826571 1 0.0781746506690979 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PEX26 ENSG00000215193 CDS Human protein_coding chr22:18567978 chr22:18567976 nonsynonymous SNV 0.964 1 19 hm5C_associated_SNPs_27301 0 0 1 0 2 PEX26 chr22:18568024 5'GT 18568024 Upstream 49bp
chr1 161173236 161173236 1 + G T LUAD 161173246 + 161173226 161173266 41 GAGGTGTTCGGCAGTGGCAGCCAGATGTGGAATGGGCACAG GAGGTGTTCGTCAGTGGCAGCCAGATGTGGAATGGGCACAG < 41bp 1 0.656486322691416 1 0.651928186416626 experiment 0.687027354617167 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161173246 chr1:161173236 synonymous SNV . 0 11 hm5C_associated_SNPs_27302 0 0 1 0 2 NDUFS2 chr1:161173193 3'AG 161173193 Downstream 44bp
chr1 161173236 161173236 1 + G T LUAD 161173246 + 161173226 161173266 41 GAGGTGTTCGGCAGTGGCAGCCAGATGTGGAATGGGCACAG GAGGTGTTCGTCAGTGGCAGCCAGATGTGGAATGGGCACAG < 41bp 1 0.656486322691416 1 0.651928186416626 experiment 0.687027354617167 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161173246 chr1:161173236 synonymous SNV . 0 11 hm5C_associated_SNPs_27302 0 0 1 0 2 NDUFS2 chr1:161173333 5'GT 161173333 Upstream 98bp
chrX 135106602 135106602 1 + G T LUAD 135106613 + 135106593 135106633 41 TGGGTATTTGGTGGTGGCACCACTGCAATGCTGTCATGCTT TGGGTATTTTGTGGTGGCACCACTGCAATGCTGTCATGCTT < 41bp 1 0.281151367376171 1 0.574376046657562 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135106613 chrX:135106602 nonsynonymous SNV 0.996 4 10 hm5C_associated_SNPs_27303 0 0 1 0 1 SLC9A6 chrX:135106642 5'GT 135106642 Upstream 41bp
chr3 148871334 148871334 1 + A G LUAD 148871349 + 148871329 148871369 41 TTCATAGGCTTGAAAGCCATCTGTCACTTTAAAAACCACAT TTCATGGGCTTGAAAGCCATCTGTCACTTTAAAAACCACAT < 41bp 1 0.110575894061942 1 0.0864420533180237 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HPS3 ENSG00000163755 CDS Human protein_coding chr3:148871349 chr3:148871334 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_27304 0 0 0 0 1 HPS3 chr3:148871281 3'AG 148871281 Downstream 54bp
chr12 73012765 73012765 1 + C A LUAD 73012771 + 73012751 73012791 41 CTGCCAGCCGAGCTCTTTATCCTCTAGATAAATTACTGGAC CTGCCAGCCGAGCTATTTATCCTCTAGATAAATTACTGGAC < 41bp 1 0.101916069052111 1 0.289652347564697 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRHDE ENSG00000072657 CDS Human protein_coding chr12:73012771 chr12:73012765 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_27305 0 0 0 0 2 TRHDE chr12:73012671 3'AG 73012671 Downstream 95bp
chr12 73012765 73012765 1 + C A LUAD 73012771 + 73012751 73012791 41 CTGCCAGCCGAGCTCTTTATCCTCTAGATAAATTACTGGAC CTGCCAGCCGAGCTATTTATCCTCTAGATAAATTACTGGAC < 41bp 1 0.101916069052111 1 0.289652347564697 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRHDE ENSG00000072657 CDS Human protein_coding chr12:73012771 chr12:73012765 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_27305 0 0 0 0 2 TRHDE chr12:73012818 5'GT 73012818 Upstream 54bp
chr8 120431371 120431371 1 + C T LUAD 120431390 + 120431370 120431410 41 GCTTACAGGCCAGAAGCCACCCTAGGAGTAGAAGTCTCTGA GTTTACAGGCCAGAAGCCACCCTAGGAGTAGAAGTCTCTGA < 41bp 1 0.232240558929874 1 0.0776697397232056 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOV ENSG00000136999 CDS Human protein_coding chr8:120431390 chr8:120431371 nonsynonymous SNV 0.943 3 2 hm5C_associated_SNPs_27306 0 0 0 0 1 NOV chr8:120431371 3'AG 120431371 Downstream 1bp
chr2 71297697 71297697 1 + G A LUAD 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGATGAACTGAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.55248064341579 1 0.422680795192719 experiment 0.895038713168421 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297697 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_27311 0 0 1 2 2 NAGK chr2:71297632 3'AG 71297632 Downstream 66bp
chr2 71297697 71297697 1 + G A LUAD 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGATGAACTGAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.55248064341579 1 0.422680795192719 experiment 0.895038713168421 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297697 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_27311 0 0 1 2 2 NAGK chr2:71297716 5'GT 71297716 Upstream 20bp
chr4 183609453 183609453 1 + G A LUAD 183609440 + 183609420 183609460 41 CACCCCCGCTGTGCCGAGCACGGGACCTGCAAGGATGGCAA CACCCCCGCTGTGCCGAGCACGGGACCTGCAAGAATGGCAA < 41bp 1 0.736589905314732 1 0.78667938709259 experiment 0.526820189370536 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TENM3 ENSG00000218336 CDS Human protein_coding chr4:183609440 chr4:183609453 nonsynonymous SNV 1.000 0 34 hm5C_associated_SNPs_27312 0 0 0 0 1 TENM3 chr4:183609504 5'GT 183609504 Upstream 52bp
chr17 38318122 38318122 1 + C T LUAD 38318128 + 38318108 38318148 41 GAAAAGCCTGACACCAAAAGCACTGTGACTGGAGAGAGGCA GAAAAGCCTGACACTAAAAGCACTGTGACTGGAGAGAGGCA < 41bp 1 0.275060115036902 1 0.153714418411255 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318128 chr17:38318122 synonymous SNV . 0 15 hm5C_associated_SNPs_27313 0 0 1 0 1 CASC3 chr17:38318164 5'GT 38318164 Upstream 43bp
chr20 44522627 44522627 1 + G A LUAD 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGACTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA < 41bp 1 0.135321969716783 1 0.930726706981659 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522627 synonymous SNV . 0 5 hm5C_associated_SNPs_27314 0 0 1 1 2 CTSA chr20:44522627 3'AG 44522627 Downstream 1bp
chr20 44522627 44522627 1 + G A LUAD 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGACTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA < 41bp 1 0.135321969716783 1 0.930726706981659 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522627 synonymous SNV . 0 5 hm5C_associated_SNPs_27314 0 0 1 1 2 CTSA chr20:44522711 5'GT 44522711 Upstream 85bp
chr7 142460320 142460320 1 + G T LUAD 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTTTG < 41bp 1 0.310843302017688 1 0.139179229736328 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460320 nonsynonymous SNV 0.001 1 39 hm5C_associated_SNPs_27315 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 39bp
chr7 142460320 142460320 1 + G T LUAD 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTTTG < 41bp 1 0.310843302017688 1 0.139179229736328 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460320 nonsynonymous SNV 0.001 1 39 hm5C_associated_SNPs_27315 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 99bp
chr7 142460320 142460320 1 + G T LUAD 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTTTGCTGAG < 41bp 1 0.223822083862115 1 0.0758628845214844 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460320 nonsynonymous SNV 0.001 1 34 hm5C_associated_SNPs_27316 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 39bp
chr7 142460320 142460320 1 + G T LUAD 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTTTGCTGAG < 41bp 1 0.223822083862115 1 0.0758628845214844 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460320 nonsynonymous SNV 0.001 1 34 hm5C_associated_SNPs_27316 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 99bp
chr7 142460320 142460320 1 + G T LUAD 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGGATGCTCCTTTGCTGAGCCAGGCTA < 41bp 1 0.399791796953712 1 0.237693041563034 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460320 nonsynonymous SNV 0.001 1 26 hm5C_associated_SNPs_27317 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 39bp
chr7 142460320 142460320 1 + G T LUAD 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGGATGCTCCTTTGCTGAGCCAGGCTA < 41bp 1 0.399791796953712 1 0.237693041563034 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460320 nonsynonymous SNV 0.001 1 26 hm5C_associated_SNPs_27317 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 99bp
chr7 142460320 142460320 1 + G T LUAD 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGGATGCTCCTTTGCTGAGCCAGGCTAAG < 41bp 1 0.0481588510012418 1 0.0460463166236877 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460320 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_27318 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 39bp
chr7 142460320 142460320 1 + G T LUAD 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGGATGCTCCTTTGCTGAGCCAGGCTAAG < 41bp 1 0.0481588510012418 1 0.0460463166236877 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460320 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_27318 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 99bp
chr7 142460320 142460320 1 + G T LUAD 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGGATGCTCCTTTGCTGAGCCAGGCTAAGT < 41bp 1 0.171009406256417 1 0.0714225769042969 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460320 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_27319 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 39bp
chr7 142460320 142460320 1 + G T LUAD 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGGATGCTCCTTTGCTGAGCCAGGCTAAGT < 41bp 1 0.171009406256417 1 0.0714225769042969 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460320 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_27319 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 99bp
chr7 142460320 142460320 1 + G T LUAD 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATGCTCCTTTGCTGAGCCAGGCTAAGTGTGAA < 41bp 1 0.595166710043215 1 0.166579276323318 experiment 0.809666579913569 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460320 nonsynonymous SNV 0.001 1 18 hm5C_associated_SNPs_27320 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 39bp
chr7 142460320 142460320 1 + G T LUAD 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATGCTCCTTTGCTGAGCCAGGCTAAGTGTGAA < 41bp 1 0.595166710043215 1 0.166579276323318 experiment 0.809666579913569 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460320 nonsynonymous SNV 0.001 1 18 hm5C_associated_SNPs_27320 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 99bp
chr7 142460320 142460320 1 + G T LUAD 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTCCTTTGCTGAGCCAGGCTAAGTGTGAAGCCTC < 41bp 1 0.2996134304432 1 0.249823778867722 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460320 nonsynonymous SNV 0.001 1 13 hm5C_associated_SNPs_27321 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 39bp
chr7 142460320 142460320 1 + G T LUAD 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTCCTTTGCTGAGCCAGGCTAAGTGTGAAGCCTC < 41bp 1 0.2996134304432 1 0.249823778867722 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460320 nonsynonymous SNV 0.001 1 13 hm5C_associated_SNPs_27321 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 99bp
chr7 142460320 142460320 1 + G T LUAD 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTCCTTTGCTGAGCCAGGCTAAGTGTGAAGCCTCC < 41bp 1 0.454231071259467 1 0.443793624639511 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460320 nonsynonymous SNV 0.001 1 12 hm5C_associated_SNPs_27322 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 39bp
chr7 142460320 142460320 1 + G T LUAD 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTCCTTTGCTGAGCCAGGCTAAGTGTGAAGCCTCC < 41bp 1 0.454231071259467 1 0.443793624639511 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460320 nonsynonymous SNV 0.001 1 12 hm5C_associated_SNPs_27322 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 99bp
chr7 142460320 142460320 1 + G T LUAD 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTTTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC < 41bp 1 0.357798966503175 1 0.100655794143677 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460320 nonsynonymous SNV 0.001 1 8 hm5C_associated_SNPs_27323 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 39bp
chr7 142460320 142460320 1 + G T LUAD 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTTTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC < 41bp 1 0.357798966503175 1 0.100655794143677 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460320 nonsynonymous SNV 0.001 1 8 hm5C_associated_SNPs_27323 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 99bp
chr20 42169596 42169596 1 + A T LUAD 42169585 + 42169565 42169605 41 CCCCACCAGGCAAGAATAGTCAGAGTGACCCATGTATCTGG CCCCACCAGGCAAGAATAGTCAGAGTGACCCTTGTATCTGG < 41bp 1 0.741214462755781 1 0.933744788169861 experiment 0.517571074488438 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control L3MBTL1 ENSG00000185513 CDS Human protein_coding chr20:42169585 chr20:42169596 nonsynonymous SNV 0.216 1 32 hm5C_associated_SNPs_27324 0 0 1 0 1 L3MBTL1 chr20:42169574 3'AG 42169574 Downstream 23bp
chr9 131193498 131193498 1 + G A LUAD 131193480 + 131193460 131193500 41 AGCAGTGCCATCAGGAACCTCGGCGTAGACCTGCTCCCGGG AGCAGTGCCATCAGGAACCTCGGCGTAGACCTGCTCCCAGG < 41bp 1 0.73381219073303 1 0.802995502948761 experiment 0.53237561853394 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131193480 chr9:131193498 synonymous SNV . 0 39 hm5C_associated_SNPs_27325 0 0 1 0 2 CERCAM chr9:131193450 3'AG 131193450 Downstream 49bp
chr9 131193498 131193498 1 + G A LUAD 131193480 + 131193460 131193500 41 AGCAGTGCCATCAGGAACCTCGGCGTAGACCTGCTCCCGGG AGCAGTGCCATCAGGAACCTCGGCGTAGACCTGCTCCCAGG < 41bp 1 0.73381219073303 1 0.802995502948761 experiment 0.53237561853394 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131193480 chr9:131193498 synonymous SNV . 0 39 hm5C_associated_SNPs_27325 0 0 1 0 2 CERCAM chr9:131193582 5'GT 131193582 Upstream 85bp
chr8 145139400 145139400 1 + G T LUAD 145139396 + 145139376 145139416 41 CTCATGGTTCTGCGGCAGGCCTCCGGCCGCCCCCACGGCTC CTCATGGTTCTGCGGCAGGCCTCCTGCCGCCCCCACGGCTC < 41bp 1 0.610207418098002 1 0.747368216514587 experiment 0.779585163803997 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139396 chr8:145139400 nonsynonymous SNV 0.722 4 25 hm5C_associated_SNPs_27326 0 0 1 0 1 GPAA1 chr8:145139316 3'AG 145139316 Downstream 85bp
chr8 145139400 145139400 1 + G T LUAD 145139416 + 145139396 145139436 41 CTCCGGCCGCCCCCACGGCTCCCATGGCCTCTTCCTGCGCT CTCCTGCCGCCCCCACGGCTCCCATGGCCTCTTCCTGCGCT < 41bp 1 0.30490739885467 1 0.0367430448532104 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139416 chr8:145139400 nonsynonymous SNV 0.722 4 5 hm5C_associated_SNPs_27327 0 0 1 0 1 GPAA1 chr8:145139316 3'AG 145139316 Downstream 85bp
chr8 145139400 145139400 1 + G T LUAD 145139418 + 145139398 145139438 41 CCGGCCGCCCCCACGGCTCCCATGGCCTCTTCCTGCGCTAC CCTGCCGCCCCCACGGCTCCCATGGCCTCTTCCTGCGCTAC < 41bp 1 0.593728800448716 1 0.055500328540802 experiment 0.812542399102568 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139418 chr8:145139400 nonsynonymous SNV 0.722 4 3 hm5C_associated_SNPs_27328 0 0 1 0 1 GPAA1 chr8:145139316 3'AG 145139316 Downstream 85bp
chr8 124787436 124787436 1 + G C LUAD 124787439 + 124787419 124787459 41 TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGCT TATGAGGAACTGCTAAACTACAGCCGAGATCATCTCATGCT < 41bp 1 0.409890455837298 1 0.16869044303894 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787439 chr8:124787436 nonsynonymous SNV 0.987 1 18 hm5C_associated_SNPs_27329 0 0 1 0 1 FAM91A1 chr8:124787387 3'AG 124787387 Downstream 50bp
chr1 31898638 31898638 1 + G C LUAD 31898654 + 31898634 31898674 41 TTCGGCGTCGTGGGCTCCTTCCTCTTCATCCTCATCCAGCT TTCGCCGTCGTGGGCTCCTTCCTCTTCATCCTCATCCAGCT < 41bp 1 0.118052705218208 1 0.229969054460526 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31898654 chr1:31898638 nonsynonymous SNV 0.962 4 5 hm5C_associated_SNPs_27331 0 0 0 0 1 SERINC2 chr1:31898623 3'AG 31898623 Downstream 16bp
chr11 120769328 120769328 1 + C G LUAD 120769341 + 120769321 120769361 41 CACCACCCTGGTCGTCACCACCATCCTGGTAAGTGGGCTCT CACCACCGTGGTCGTCACCACCATCCTGGTAAGTGGGCTCT < 41bp 1 0.0232387798055986 1 0.0562650263309479 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120769341 chr11:120769328 nonsynonymous SNV 0.999 2 8 hm5C_associated_SNPs_27332 0 0 0 0 2 GRIK4 chr11:120769241 3'AG 120769241 Downstream 88bp
chr11 120769328 120769328 1 + C G LUAD 120769341 + 120769321 120769361 41 CACCACCCTGGTCGTCACCACCATCCTGGTAAGTGGGCTCT CACCACCGTGGTCGTCACCACCATCCTGGTAAGTGGGCTCT < 41bp 1 0.0232387798055986 1 0.0562650263309479 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120769341 chr11:120769328 nonsynonymous SNV 0.999 2 8 hm5C_associated_SNPs_27332 0 0 0 0 2 GRIK4 chr11:120769348 5'GT 120769348 Upstream 21bp
chr11 43908159 43908159 1 + A G LUAD 43908156 + 43908136 43908176 41 TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTGTATGAAAT TGTTTCCTTTGTTTCTTTAGCAGGGAGGGTGTGTATGAAAT < 41bp 1 0.694529853453876 1 0.669933140277863 experiment 0.610940293092249 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908156 chr11:43908159 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_27333 0 0 1 4 3 ALKBH3 chr11:43908156 3'AG 43908156 Downstream 4bp
chr11 43908159 43908159 1 + A G LUAD 43908156 + 43908136 43908176 41 TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTGTATGAAAT TGTTTCCTTTGTTTCTTTAGCAGGGAGGGTGTGTATGAAAT < 41bp 1 0.694529853453876 1 0.669933140277863 experiment 0.610940293092249 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908156 chr11:43908159 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_27333 0 0 1 4 3 ALKBH3 chr11:43908159 3'AG 43908159 Downstream 1bp
chr11 43908159 43908159 1 + A G LUAD 43908156 + 43908136 43908176 41 TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTGTATGAAAT TGTTTCCTTTGTTTCTTTAGCAGGGAGGGTGTGTATGAAAT < 41bp 1 0.694529853453876 1 0.669933140277863 experiment 0.610940293092249 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908156 chr11:43908159 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_27333 0 0 1 4 3 ALKBH3 chr11:43908203 5'GT 43908203 Upstream 45bp
chr14 23794470 23794470 1 + C G LUAD 23794459 + 23794439 23794479 41 CTCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCATG CTCCTTCTTTCTTCCAGGGGCCGGGCTAGAGGGACATCATG < 41bp 1 0.309726744763818 1 0.157879114151001 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23794459 chr14:23794470 nonsynonymous SNV 0.999 1 32 hm5C_associated_SNPs_27334 0 0 1 0 1 BCL2L2-PABPN1;PABPN1 chr14:23794456 3'AG 23794456 Downstream 15bp
chr14 23794470 23794470 1 + C G LUAD 23794460 + 23794440 23794480 41 TCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCATGG TCCTTCTTTCTTCCAGGGGCCGGGCTAGAGGGACATCATGG < 41bp 1 0.422210565428114 1 0.489984780550003 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23794460 chr14:23794470 nonsynonymous SNV 0.999 1 31 hm5C_associated_SNPs_27335 0 0 1 0 1 BCL2L2-PABPN1;PABPN1 chr14:23794456 3'AG 23794456 Downstream 15bp
chr19 7620626 7620626 1 + C T LUAD 7620645 + 7620625 7620665 41 GCAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGA GTAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGA < 41bp 1 0.250562950458473 1 0.508771359920502 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620645 chr19:7620626 stopgain 0.998 0 2 hm5C_associated_SNPs_27342 0 0 1 0 1 PNPLA6 chr19:7620649 5'GT 7620649 Upstream 24bp
chr19 7620626 7620626 1 + C T LUAD 7620646 + 7620626 7620666 41 CAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGAG TAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGAG < 41bp 1 0.471743793711504 1 0.728572368621826 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620646 chr19:7620626 stopgain 0.998 0 1 hm5C_associated_SNPs_27343 0 0 1 0 1 PNPLA6 chr19:7620649 5'GT 7620649 Upstream 24bp
chr16 53319565 53319565 1 + G C LUAD 53319551 + 53319531 53319571 41 AACCAGACCACTCAGAAGTTCCTGCTGAGTGGTGGGATTTT AACCAGACCACTCAGAAGTTCCTGCTGAGTGGTGCGATTTT < 41bp 1 0.0414919344532761 1 0.0353025197982788 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHD9 ENSG00000177200 CDS Human protein_coding chr16:53319551 chr16:53319565 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_27344 0 0 1 0 2 CHD9 chr16:53319508 3'AG 53319508 Downstream 58bp
chr16 53319565 53319565 1 + G C LUAD 53319551 + 53319531 53319571 41 AACCAGACCACTCAGAAGTTCCTGCTGAGTGGTGGGATTTT AACCAGACCACTCAGAAGTTCCTGCTGAGTGGTGCGATTTT < 41bp 1 0.0414919344532761 1 0.0353025197982788 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHD9 ENSG00000177200 CDS Human protein_coding chr16:53319551 chr16:53319565 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_27344 0 0 1 0 2 CHD9 chr16:53319611 5'GT 53319611 Upstream 47bp
chr19 50302908 50302908 1 + G A LUAD 50302928 + 50302908 50302948 41 GGCAGCGGGCGGCTGACCTCCTCTACGCCATGTGTGACCGG AGCAGCGGGCGGCTGACCTCCTCTACGCCATGTGTGACCGG < 41bp 1 0.640239403173704 1 0.764561891555786 experiment 0.719521193652591 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50302928 chr19:50302908 nonsynonymous SNV 0.999 1 1 hm5C_associated_SNPs_27346 0 0 1 0 1 AP2A1 chr19:50302886 3'AG 50302886 Downstream 23bp
chr2 46574050 46574050 1 + C T LUAD 46574069 + 46574049 46574089 41 GCTGCGCGGTGCCGGCGGAGCAAGGAGACGGAGGTGTTCTA GTTGCGCGGTGCCGGCGGAGCAAGGAGACGGAGGTGTTCTA < 41bp 1 0.794181447301967 1 0.799935579299927 experiment 0.411637105396065 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46574069 chr2:46574050 nonsynonymous SNV 0.387 4 2 hm5C_associated_SNPs_27347 0 0 1 0 1 EPAS1 chr2:46574012 3'AG 46574012 Downstream 39bp
chr6 31638977 31638977 1 + G T LUAD 31638959 + 31638939 31638979 41 TTCCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAAGAC TTCCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAATAC < 41bp 1 0.331401856549451 1 0.0359694957733154 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LY6G5B ENSG00000240053;ENSG00000263020 CDS Human other chr6:31638959 chr6:31638977 nonsynonymous SNV 0.986 3 39 hm5C_associated_SNPs_27348 0 0 1 0 2 LY6G5B chr6:31638933 3'AG 31638933 Downstream 45bp
chr6 31638977 31638977 1 + G T LUAD 31638959 + 31638939 31638979 41 TTCCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAAGAC TTCCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAATAC < 41bp 1 0.331401856549451 1 0.0359694957733154 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LY6G5B ENSG00000240053;ENSG00000263020 CDS Human other chr6:31638959 chr6:31638977 nonsynonymous SNV 0.986 3 39 hm5C_associated_SNPs_27348 0 0 1 0 2 LY6G5B chr6:31639061 5'GT 31639061 Upstream 85bp
chr6 31638977 31638977 1 + G T LUAD 31638961 + 31638941 31638981 41 CCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAAGACCC CCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAATACCC < 41bp 1 0.317463841456292 1 0.045625776052475 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LY6G5B ENSG00000240053;ENSG00000263020 CDS Human other chr6:31638961 chr6:31638977 nonsynonymous SNV 0.986 3 37 hm5C_associated_SNPs_27349 0 0 1 0 2 LY6G5B chr6:31638933 3'AG 31638933 Downstream 45bp
chr6 31638977 31638977 1 + G T LUAD 31638961 + 31638941 31638981 41 CCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAAGACCC CCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAATACCC < 41bp 1 0.317463841456292 1 0.045625776052475 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LY6G5B ENSG00000240053;ENSG00000263020 CDS Human other chr6:31638961 chr6:31638977 nonsynonymous SNV 0.986 3 37 hm5C_associated_SNPs_27349 0 0 1 0 2 LY6G5B chr6:31639061 5'GT 31639061 Upstream 85bp
chr20 37570728 37570728 1 + G T LUAD 37570736 + 37570716 37570756 41 TCTCAATTTCTGGATATGTGCATGGATCTGAAAGTTCATCC TCTCAATTTCTGTATATGTGCATGGATCTGAAAGTTCATCC < 41bp 1 0.394545292868402 1 0.0706040263175964 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM83D ENSG00000101447 CDS Human protein_coding chr20:37570736 chr20:37570728 nonsynonymous SNV 0.990 3 13 hm5C_associated_SNPs_27350 0 0 1 0 1 FAM83D chr20:37570769 5'GT 37570769 Upstream 42bp
chr2 54872392 54872392 1 + G T LUAD 54872378 + 54872358 54872398 41 GCCCTCAGATGCTGGAGAATCAGATGGAAGTGCGGAAGAAG GCCCTCAGATGCTGGAGAATCAGATGGAAGTGCGTAAGAAG < 41bp 1 0.396202746252205 1 0.806172132492065 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872378 chr2:54872392 synonymous SNV . 0 35 hm5C_associated_SNPs_27352 0 0 1 0 1 SPTBN1 chr2:54872366 3'AG 54872366 Downstream 27bp
chr12 104056673 104056673 1 + C A LUAD 104056683 + 104056663 104056703 41 GAGATCACTGCCAAAAATGGCCGAATTTACACACTGACAGG GAGATCACTGACAAAAATGGCCGAATTTACACACTGACAGG < 41bp 1 0.191990634958474 1 0.291766375303268 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient STAB2 ENSG00000136011 CDS Human protein_coding chr12:104056683 chr12:104056673 nonsynonymous SNV 0.933 5 11 hm5C_associated_SNPs_27353 0 0 0 0 1 STAB2 chr12:104056624 3'AG 104056624 Downstream 50bp
chr7 73927187 73927187 1 + G T LUAD 73927169 + 73927149 73927189 41 CCTTCCCACAGTGCTCAGCGCTGTCCAAACTGAACGCCGAG CCTTCCCACAGTGCTCAGCGCTGTCCAAACTGAACGCCTAG < 41bp 1 0.0907740890089883 1 0.401000171899796 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73927169 chr7:73927187 stopgain 0.924 1 39 hm5C_associated_SNPs_27354 0 0 1 0 1 GTF2IRD1 chr7:73927160 3'AG 73927160 Downstream 28bp
chr7 130020972 130020972 1 + G A LUAD 130020965 + 130020945 130020985 41 GGTGCTCCGAATCTCTGTAGCCGATGAGGCCCAGGTACAGA GGTGCTCCGAATCTCTGTAGCCGATGAAGCCCAGGTACAGA < 41bp 1 0.273503424125749 1 0.134852468967438 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130020965 chr7:130020972 synonymous SNV . 0 28 hm5C_associated_SNPs_27356 0 0 0 0 2 CPA1 chr7:130020939 3'AG 130020939 Downstream 34bp
chr7 130020972 130020972 1 + G A LUAD 130020965 + 130020945 130020985 41 GGTGCTCCGAATCTCTGTAGCCGATGAGGCCCAGGTACAGA GGTGCTCCGAATCTCTGTAGCCGATGAAGCCCAGGTACAGA < 41bp 1 0.273503424125749 1 0.134852468967438 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130020965 chr7:130020972 synonymous SNV . 0 28 hm5C_associated_SNPs_27356 0 0 0 0 2 CPA1 chr7:130021020 5'GT 130021020 Upstream 49bp
chr6 42974779 42974779 1 + G C LUAD 42974762 + 42974742 42974782 41 TCAAATTCAAGGAGGTGAAGCGGGCAGGACTCAACGAGATG TCAAATTCAAGGAGGTGAAGCGGGCAGGACTCAACGACATG < 41bp 1 0.579163011089812 1 0.477130681276321 experiment 0.841673977820376 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974762 chr6:42974779 nonsynonymous SNV 0.999 2 38 hm5C_associated_SNPs_27357 0 0 1 0 1 PPP2R5D chr6:42974848 5'GT 42974848 Upstream 70bp
chr6 42974779 42974779 1 + G C LUAD 42974771 + 42974751 42974791 41 AGGAGGTGAAGCGGGCAGGACTCAACGAGATGGTGGAGTAC AGGAGGTGAAGCGGGCAGGACTCAACGACATGGTGGAGTAC < 41bp 1 0.614294728130752 1 0.860748767852783 experiment 0.771410543738496 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974771 chr6:42974779 nonsynonymous SNV 0.999 2 29 hm5C_associated_SNPs_27358 0 0 1 0 1 PPP2R5D chr6:42974848 5'GT 42974848 Upstream 70bp
chr7 142459867 142459867 1 + C A LUAD 142459847 + 142459827 142459867 41 ACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACACTGC ACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACACTGA < 41bp 1 0.759806696954969 1 0.341851025819778 experiment 0.480386606090061 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459847 chr7:142459867 nonsynonymous SNV 0.023 1 41 hm5C_associated_SNPs_27359 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 12bp
chr7 142459867 142459867 1 + C A LUAD 142459849 + 142459829 142459869 41 TGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACACTGCGA TGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACACTGAGA < 41bp 1 0.798416157664674 1 0.502445101737976 experiment 0.403167684670651 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459849 chr7:142459867 nonsynonymous SNV 0.023 1 39 hm5C_associated_SNPs_27360 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 12bp
chr7 142459867 142459867 1 + C A LUAD 142459862 + 142459842 142459882 41 CTCATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGA CTCATCTCTGGCTGGGGCAACACTGAGAGCTCTGGCGGTGA < 41bp 1 0.387352437558519 1 0.152378231287003 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459862 chr7:142459867 nonsynonymous SNV 0.023 1 26 hm5C_associated_SNPs_27361 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 12bp
chr7 142459867 142459867 1 + C A LUAD 142459864 + 142459844 142459884 41 CATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGT CATCTCTGGCTGGGGCAACACTGAGAGCTCTGGCGGTGAGT < 41bp 1 0.673198920751905 1 0.394204020500183 experiment 0.65360215849619 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459864 chr7:142459867 nonsynonymous SNV 0.023 1 24 hm5C_associated_SNPs_27362 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 12bp
chr7 142459867 142459867 1 + C A LUAD 142459871 + 142459851 142459891 41 GGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCC GGCTGGGGCAACACTGAGAGCTCTGGCGGTGAGTGGGACCC < 41bp 1 0.436043129644456 1 0.297114849090576 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459871 chr7:142459867 nonsynonymous SNV 0.023 1 17 hm5C_associated_SNPs_27363 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 12bp
chr7 142459867 142459867 1 + C A LUAD 142459873 + 142459853 142459893 41 CTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCCTT CTGGGGCAACACTGAGAGCTCTGGCGGTGAGTGGGACCCTT < 41bp 1 0.642332958544902 1 0.412419825792313 experiment 0.715334082910197 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459873 chr7:142459867 nonsynonymous SNV 0.023 1 15 hm5C_associated_SNPs_27364 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 12bp
chr7 142459867 142459867 1 + C A LUAD 142459877 + 142459857 142459897 41 GGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCCTTAGTC GGCAACACTGAGAGCTCTGGCGGTGAGTGGGACCCTTAGTC < 41bp 1 0.488844599728102 1 0.859154462814331 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459877 chr7:142459867 nonsynonymous SNV 0.023 1 11 hm5C_associated_SNPs_27365 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 12bp
chr10 118306827 118306827 1 + G A LUAD 118306831 + 118306811 118306851 41 GAAGTTTGCTACGAAAGACTCGGCTGCTTCAGTGATGACTC GAAGTTTGCTACGAAAAACTCGGCTGCTTCAGTGATGACTC < 41bp 1 0.732294126945575 1 0.267342299222946 experiment 0.53541174610885 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306831 chr10:118306827 nonsynonymous SNV 0.723 1 17 hm5C_associated_SNPs_27366 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 22bp
chrX 103432893 103432893 1 + G C LUAD 103432885 + 103432865 103432905 41 TCTGCAAGCAGCAGTGGGTCCAGTGTTGGAAACTCTGCTTC TCTGCAAGCAGCAGTGGGTCCAGTGTTGCAAACTCTGCTTC < 41bp 1 0.796049020869885 1 0.421134352684021 experiment 0.40790195826023 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAM199X ENSG00000123575 CDS Human protein_coding chrX:103432885 chrX:103432893 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_27367 0 0 1 0 1 FAM199X chrX:103432987 5'GT 103432987 Upstream 95bp
chr20 44037105 44037105 1 + G A LUAD 44037094 + 44037074 44037114 41 TACTTGTTTTGCTCCTCTACCCGCAGGAGCTGACATGGACC TACTTGTTTTGCTCCTCTACCCGCAGGAGCTAACATGGACC < 41bp 1 0.4375897162969 1 0.363094687461853 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DBNDD2 ENSG00000244274;ENSG00000254806 CDS Human other chr20:44037094 chr20:44037105 nonsynonymous SNV 0.963 1 32 hm5C_associated_SNPs_27371 0 0 1 0 1 DBNDD2 chr20:44037100 3'AG 44037100 Downstream 6bp
chr14 21544746 21544746 1 + C G LUAD 21544752 + 21544732 21544772 41 ATCCTCCCCTTGTTCAGCGGCTGCTGATTCTCATTCATGAT ATCCTCCCCTTGTTGAGCGGCTGCTGATTCTCATTCATGAT < 41bp 1 0.142826088579395 1 0.124041885137558 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21544752 chr14:21544746 nonsynonymous SNV 0.778 1 15 hm5C_associated_SNPs_27372 0 0 1 0 3 ARHGEF40 chr14:21544695 3'AG 21544695 Downstream 52bp
chr14 21544746 21544746 1 + C G LUAD 21544752 + 21544732 21544772 41 ATCCTCCCCTTGTTCAGCGGCTGCTGATTCTCATTCATGAT ATCCTCCCCTTGTTGAGCGGCTGCTGATTCTCATTCATGAT < 41bp 1 0.142826088579395 1 0.124041885137558 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21544752 chr14:21544746 nonsynonymous SNV 0.778 1 15 hm5C_associated_SNPs_27372 0 0 1 0 3 ARHGEF40 chr14:21544722 3'AG 21544722 Downstream 25bp
chr14 21544746 21544746 1 + C G LUAD 21544752 + 21544732 21544772 41 ATCCTCCCCTTGTTCAGCGGCTGCTGATTCTCATTCATGAT ATCCTCCCCTTGTTGAGCGGCTGCTGATTCTCATTCATGAT < 41bp 1 0.142826088579395 1 0.124041885137558 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21544752 chr14:21544746 nonsynonymous SNV 0.778 1 15 hm5C_associated_SNPs_27372 0 0 1 0 3 ARHGEF40 chr14:21544802 5'GT 21544802 Upstream 57bp
chr2 46574056 46574056 1 + G T LUAD 46574069 + 46574049 46574089 41 GCTGCGCGGTGCCGGCGGAGCAAGGAGACGGAGGTGTTCTA GCTGCGCTGTGCCGGCGGAGCAAGGAGACGGAGGTGTTCTA < 41bp 1 0.784640090972353 1 0.840094685554504 experiment 0.430719818055294 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46574069 chr2:46574056 nonsynonymous SNV 0.607 4 8 hm5C_associated_SNPs_27373 0 0 1 0 1 EPAS1 chr2:46574012 3'AG 46574012 Downstream 45bp
chr1 228401927 228401927 1 + G T LUAD 228401926 + 228401906 228401946 41 GGCGGTGCGCGTGGGCGACACGGCTATGTTTTGCGTGGAGC GGCGGTGCGCGTGGGCGACACTGCTATGTTTTGCGTGGAGC < 41bp 1 0.169659949572513 1 0.497144281864166 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228401926 chr1:228401927 synonymous SNV . 0 22 hm5C_associated_SNPs_27374 0 0 0 0 1 OBSCN chr1:228401875 3'AG 228401875 Downstream 53bp
chr3 37583973 37583973 1 + G T LUAD 37583980 + 37583960 37584000 41 GGCCAGATGCCCAGGGTCTACTTTGTGCTGCTGGGAGAGAC GGCCAGATGCCCATGGTCTACTTTGTGCTGCTGGGAGAGAC < 41bp 1 0.257273300663838 1 0.0434771776199341 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37583980 chr3:37583973 nonsynonymous SNV 0.951 4 14 hm5C_associated_SNPs_27375 0 0 0 0 1 ITGA9 chr3:37583916 3'AG 37583916 Downstream 58bp
chr16 82891972 82891972 1 + G T LUAD 82891983 + 82891963 82892003 41 TCAGGTGCTGCTGCTAACATCTGCAGAAGATTTGGACTGCA TCAGGTGCTTCTGCTAACATCTGCAGAAGATTTGGACTGCA < 41bp 1 0.554831643747897 1 0.790801107883453 experiment 0.890336712504206 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:82891983 chr16:82891972 synonymous SNV . 0 10 hm5C_associated_SNPs_27376 0 0 0 0 1 CDH13 chr16:82891967 3'AG 82891967 Downstream 6bp
chr9 123898152 123898152 1 + G T LUAD 123898159 + 123898139 123898179 41 TGCAGCAGACCCAGGGAGATCTCAGTGCCTATGAAGCTGAG TGCAGCAGACCCATGGAGATCTCAGTGCCTATGAAGCTGAG < 41bp 1 0.603575032374987 1 0.434450149536133 experiment 0.792849935250027 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNTRL ENSG00000119397 CDS Human protein_coding chr9:123898159 chr9:123898152 nonsynonymous SNV 0.996 0 14 hm5C_associated_SNPs_27377 0 0 1 0 1 CNTRL chr9:123898084 3'AG 123898084 Downstream 69bp
chr2 211507222 211507222 1 + T C LUAD 211507209 + 211507189 211507229 41 AATCTCATTGTCTCTGCAGGCAGCAGTGTGGAATTTGATTG AATCTCATTGTCTCTGCAGGCAGCAGTGTGGAACTTGATTG < 41bp 1 0.778309122465651 1 0.690937995910645 experiment 0.443381755068698 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211507209 chr2:211507222 nonsynonymous SNV 1.000 5 34 hm5C_associated_SNPs_27378 0 0 0 0 1 CPS1 chr2:211507208 3'AG 211507208 Downstream 15bp
chr9 123898153 123898153 1 + G T LUAD 123898159 + 123898139 123898179 41 TGCAGCAGACCCAGGGAGATCTCAGTGCCTATGAAGCTGAG TGCAGCAGACCCAGTGAGATCTCAGTGCCTATGAAGCTGAG < 41bp 1 0.635899128387478 1 0.433518886566162 experiment 0.728201743225045 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNTRL ENSG00000119397 CDS Human protein_coding chr9:123898159 chr9:123898153 stopgain 0.998 0 15 hm5C_associated_SNPs_27379 0 0 1 0 1 CNTRL chr9:123898084 3'AG 123898084 Downstream 70bp
chr10 103310561 103310561 1 + G T LUAD 103310555 + 103310535 103310575 41 TCTGGGACTTCCTAAATGATCCAGCTGCCCAAGCTGAACCC TCTGGGACTTCCTAAATGATCCAGCTTCCCAAGCTGAACCC < 41bp 1 0.400451766827533 1 0.295627981424332 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BTRC ENSG00000166167 CDS Human protein_coding chr10:103310555 chr10:103310561 nonsynonymous SNV 0.992 1 27 hm5C_associated_SNPs_27380 0 0 0 0 1 BTRC chr10:103310648 5'GT 103310648 Upstream 88bp
chr9 135942481 135942481 1 + G C LUAD 135942479 + 135942459 135942499 41 TTGGTTCTGCCCCCAGGTGGCTGAGAAGGTGGGTTGCCCTG TTGGTTCTGCCCCCAGGTGGCTCAGAAGGTGGGTTGCCCTG < 41bp 1 0.459873487190926 1 0.147570073604584 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942479 chr9:135942481 nonsynonymous SNV 0.410 0 23 hm5C_associated_SNPs_27381 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 7bp
chr9 135942481 135942481 1 + G C LUAD 135942495 + 135942475 135942515 41 GTGGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAG GTGGCTCAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAG < 41bp 1 0.267453583530417 1 0.0530041754245758 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942495 chr9:135942481 nonsynonymous SNV 0.410 0 7 hm5C_associated_SNPs_27382 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 7bp
chr9 135942481 135942481 1 + G C LUAD 135942496 + 135942476 135942516 41 TGGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGG TGGCTCAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGG < 41bp 1 0.200830428881808 1 0.0774108171463013 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942496 chr9:135942481 nonsynonymous SNV 0.410 0 6 hm5C_associated_SNPs_27383 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 7bp
chr9 135942481 135942481 1 + G C LUAD 135942497 + 135942477 135942517 41 GGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGGA GGCTCAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGGA < 41bp 1 0.522309077499859 1 0.620976507663727 experiment 0.955381845000283 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942497 chr9:135942481 nonsynonymous SNV 0.410 0 5 hm5C_associated_SNPs_27384 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 7bp
chr17 16285380 16285380 1 + C A LUAD 16285385 + 16285365 16285405 41 GCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAACATCC GCAGCTGGAAGATGGACGTACTCTTTCTGACTACAACATCC < 41bp 1 0.282670124821994 1 0.153589814901352 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBB ENSG00000170315 CDS Human protein_coding chr17:16285385 chr17:16285380 synonymous SNV . 0 16 hm5C_associated_SNPs_27386 0 0 1 0 1 UBB chr17:16285444 5'GT 16285444 Upstream 65bp
chr6 42974756 42974756 1 + G T LUAD 42974749 + 42974729 42974769 41 CCACTCAGTGACCTCAAATTCAAGGAGGTGAAGCGGGCAGG CCACTCAGTGACCTCAAATTCAAGGAGTTGAAGCGGGCAGG < 41bp 1 0.739768448000365 1 0.779473066329956 experiment 0.520463103999269 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974749 chr6:42974756 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_27387 0 0 1 0 2 PPP2R5D chr6:42974672 3'AG 42974672 Downstream 85bp
chr6 42974756 42974756 1 + G T LUAD 42974749 + 42974729 42974769 41 CCACTCAGTGACCTCAAATTCAAGGAGGTGAAGCGGGCAGG CCACTCAGTGACCTCAAATTCAAGGAGTTGAAGCGGGCAGG < 41bp 1 0.739768448000365 1 0.779473066329956 experiment 0.520463103999269 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974749 chr6:42974756 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_27387 0 0 1 0 2 PPP2R5D chr6:42974848 5'GT 42974848 Upstream 93bp
chr6 42974756 42974756 1 + G T LUAD 42974762 + 42974742 42974782 41 TCAAATTCAAGGAGGTGAAGCGGGCAGGACTCAACGAGATG TCAAATTCAAGGAGTTGAAGCGGGCAGGACTCAACGAGATG < 41bp 1 0.574680605975937 1 0.572171926498413 experiment 0.850638788048127 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974762 chr6:42974756 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_27388 0 0 1 0 2 PPP2R5D chr6:42974672 3'AG 42974672 Downstream 85bp
chr6 42974756 42974756 1 + G T LUAD 42974762 + 42974742 42974782 41 TCAAATTCAAGGAGGTGAAGCGGGCAGGACTCAACGAGATG TCAAATTCAAGGAGTTGAAGCGGGCAGGACTCAACGAGATG < 41bp 1 0.574680605975937 1 0.572171926498413 experiment 0.850638788048127 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974762 chr6:42974756 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_27388 0 0 1 0 2 PPP2R5D chr6:42974848 5'GT 42974848 Upstream 93bp
chr6 42974756 42974756 1 + G T LUAD 42974771 + 42974751 42974791 41 AGGAGGTGAAGCGGGCAGGACTCAACGAGATGGTGGAGTAC AGGAGTTGAAGCGGGCAGGACTCAACGAGATGGTGGAGTAC < 41bp 1 0.617967592668044 1 0.900013148784637 experiment 0.764064814663912 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974771 chr6:42974756 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_27389 0 0 1 0 2 PPP2R5D chr6:42974672 3'AG 42974672 Downstream 85bp
chr6 42974756 42974756 1 + G T LUAD 42974771 + 42974751 42974791 41 AGGAGGTGAAGCGGGCAGGACTCAACGAGATGGTGGAGTAC AGGAGTTGAAGCGGGCAGGACTCAACGAGATGGTGGAGTAC < 41bp 1 0.617967592668044 1 0.900013148784637 experiment 0.764064814663912 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974771 chr6:42974756 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_27389 0 0 1 0 2 PPP2R5D chr6:42974848 5'GT 42974848 Upstream 93bp
chr19 36580087 36580087 1 + G T LUAD 36580091 + 36580071 36580111 41 CTGCCGGCCCTGCCAGGGTTCGGATGGACTACACTTTGTCC CTGCCGGCCCTGCCAGTGTTCGGATGGACTACACTTTGTCC < 41bp 1 0.426678602293618 1 0.89959716796875 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36580091 chr19:36580087 nonsynonymous SNV 0.305 1 17 hm5C_associated_SNPs_27390 0 0 1 0 1 WDR62 chr19:36580087 5'GT 36580087 Upstream 1bp
chr2 211502540 211502540 1 + G T LUAD 211502553 + 211502533 211502573 41 GGTTAAAGAAAAACATCCACCCTTGGGTTAAACAGGTAAAG GGTTAAATAAAAACATCCACCCTTGGGTTAAACAGGTAAAG < 41bp 1 0.0451822621683265 1 0.23865133523941 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211502553 chr2:211502540 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_27391 0 0 0 0 1 CPS1 chr2:211502567 5'GT 211502567 Upstream 28bp
chr2 7154643 7154643 1 + G C LUAD 7154652 + 7154632 7154672 41 TGCAATTAGCTGCCCAGATGCTGCCTGCCCTAAACAGGGCC TGCAATTAGCTCCCCAGATGCTGCCTGCCCTAAACAGGGCC < 41bp 1 0.375255113672825 1 0.651285946369171 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF144A ENSG00000151692 CDS Human protein_coding chr2:7154652 chr2:7154643 nonsynonymous SNV 0.996 3 12 hm5C_associated_SNPs_27392 0 0 0 0 1 RNF144A chr2:7154585 3'AG 7154585 Downstream 59bp
chr3 183882070 183882070 1 + G T LUAD 183882074 + 183882054 183882094 41 GCTGGTGTCAGCTGAGGGCTCACACCCAGACCCAGCCCCCT GCTGGTGTCAGCTGAGTGCTCACACCCAGACCCAGCCCCCT < 41bp 1 0.319557217746359 1 0.16473326086998 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DVL3 ENSG00000161202 CDS Human protein_coding chr3:183882074 chr3:183882070 nonsynonymous SNV 0.996 4 17 hm5C_associated_SNPs_27394 0 0 1 0 1 DVL3 chr3:183882055 3'AG 183882055 Downstream 16bp
chr6 160212138 160212138 1 + C T LUAD 160212137 + 160212117 160212157 41 GGGCTGGCGGACGGTGTTTCCCTCCCGTGAGTTCTGGCACA GGGCTGGCGGACGGTGTTTCCTTCCCGTGAGTTCTGGCACA < 41bp 1 0.467484173376165 1 0.0920713543891907 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160212137 chr6:160212138 synonymous SNV . 0 22 hm5C_associated_SNPs_27396 0 0 1 0 1 MRPL18 chr6:160212158 5'GT 160212158 Upstream 21bp
chr7 128477712 128477712 1 + C A LUAD 128477710 + 128477690 128477730 41 GGCATCGAGCCACAGGGCAACACCGTGCTGCAGCCTGCCCA GGCATCGAGCCACAGGGCAACAACGTGCTGCAGCCTGCCCA < 41bp 1 0.350367381780871 1 0.277466326951981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128477710 chr7:128477712 nonsynonymous SNV 0.737 2 23 hm5C_associated_SNPs_27397 0 0 0 0 2 FLNC chr7:128477691 3'AG 128477691 Downstream 22bp
chr7 128477712 128477712 1 + C A LUAD 128477710 + 128477690 128477730 41 GGCATCGAGCCACAGGGCAACACCGTGCTGCAGCCTGCCCA GGCATCGAGCCACAGGGCAACAACGTGCTGCAGCCTGCCCA < 41bp 1 0.350367381780871 1 0.277466326951981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128477710 chr7:128477712 nonsynonymous SNV 0.737 2 23 hm5C_associated_SNPs_27397 0 0 0 0 2 FLNC chr7:128477809 5'GT 128477809 Upstream 98bp
chrX 53114910 53114910 1 + A T LUAD 53114930 + 53114910 53114950 41 ACAATTCATGACATCAAGATCTCTGACTTCATGGAGACCAC TCAATTCATGACATCAAGATCTCTGACTTCATGGAGACCAC < 41bp 1 0.406762122655051 1 0.244189888238907 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSPYL2 ENSG00000184205 CDS Human protein_coding chrX:53114930 chrX:53114910 nonsynonymous SNV 0.999 1 1 hm5C_associated_SNPs_27398 0 0 1 1 1 TSPYL2 chrX:53114813 3'AG 53114813 Downstream 98bp
chr14 52169297 52169297 1 + G C LUAD 52169280 + 52169260 52169300 41 ATCCACTTCCGTGTGCAGTACTATGTGGAAAATGGCAGATT ATCCACTTCCGTGTGCAGTACTATGTGGAAAATGGCACATT < 41bp 1 0.221891423260036 1 0.0922210812568665 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52169280 chr14:52169297 nonsynonymous SNV 0.821 1 38 hm5C_associated_SNPs_27399 0 0 0 0 1 FRMD6 chr14:52169306 5'GT 52169306 Upstream 10bp
chr9 131193497 131193497 1 + C T LUAD 131193480 + 131193460 131193500 41 AGCAGTGCCATCAGGAACCTCGGCGTAGACCTGCTCCCGGG AGCAGTGCCATCAGGAACCTCGGCGTAGACCTGCTCCTGGG < 41bp 1 0.728293125184799 1 0.726210474967957 experiment 0.543413749630401 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131193480 chr9:131193497 nonsynonymous SNV 0.994 4 38 hm5C_associated_SNPs_27400 0 0 1 0 2 CERCAM chr9:131193450 3'AG 131193450 Downstream 48bp
chr9 131193497 131193497 1 + C T LUAD 131193480 + 131193460 131193500 41 AGCAGTGCCATCAGGAACCTCGGCGTAGACCTGCTCCCGGG AGCAGTGCCATCAGGAACCTCGGCGTAGACCTGCTCCTGGG < 41bp 1 0.728293125184799 1 0.726210474967957 experiment 0.543413749630401 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131193480 chr9:131193497 nonsynonymous SNV 0.994 4 38 hm5C_associated_SNPs_27400 0 0 1 0 2 CERCAM chr9:131193582 5'GT 131193582 Upstream 86bp
chr2 173451116 173451116 1 + G A LUAD 173451098 + 173451078 173451118 41 CCAAGACCTCGTGTTGAGACCTCCCGCGCAGTGCCTCTGGT CCAAGACCTCGTGTTGAGACCTCCCGCGCAGTGCCTCTAGT < 41bp 1 0.342797825213908 1 0.421351075172424 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK1 ENSG00000152256 CDS Human protein_coding chr2:173451098 chr2:173451116 synonymous SNV . 0 39 hm5C_associated_SNPs_27402 0 0 1 0 1 PDK1 chr2:173451116 5'GT 173451116 Upstream 1bp
chr20 30738501 30738501 1 + C G LUAD 30738486 + 30738466 30738506 41 GCTCTCATGACCACAGCCTGCTTCCTCTTCATGTTCATGGG GCTCTCATGACCACAGCCTGCTTCCTCTTCATGTTGATGGG < 41bp 1 0.145410020377278 1 0.0314746797084808 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30738486 chr20:30738501 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_27410 0 0 1 0 2 TM9SF4 chr20:30738425 3'AG 30738425 Downstream 77bp
chr20 30738501 30738501 1 + C G LUAD 30738486 + 30738466 30738506 41 GCTCTCATGACCACAGCCTGCTTCCTCTTCATGTTCATGGG GCTCTCATGACCACAGCCTGCTTCCTCTTCATGTTGATGGG < 41bp 1 0.145410020377278 1 0.0314746797084808 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30738486 chr20:30738501 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_27410 0 0 1 0 2 TM9SF4 chr20:30738506 5'GT 30738506 Upstream 6bp
chr1 117626662 117626662 1 + T C LUAD 117626677 + 117626657 117626697 41 TCCCATGGAACACTAATCATCTGTCCTGCCTCCCTGATCCA TCCCACGGAACACTAATCATCTGTCCTGCCTCCCTGATCCA < 41bp 1 0.135704361995944 1 0.123739808797836 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117626677 chr1:117626662 synonymous SNV . 0 6 hm5C_associated_SNPs_27411 0 0 1 0 1 TTF2 chr1:117626640 3'AG 117626640 Downstream 23bp
chr7 16823093 16823093 1 + G A LUAD 16823094 + 16823074 16823114 41 GAACCAGAAAGACCCCCGCGCGAATCCTAGTGCATTCCTTT GAACCAGAAAGACCCCCGCACGAATCCTAGTGCATTCCTTT < 41bp 1 0.197900547599755 1 0.107584118843079 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSPAN13 ENSG00000106537 CDS Human protein_coding chr7:16823094 chr7:16823093 nonsynonymous SNV 0.905 2 20 hm5C_associated_SNPs_27413 0 0 1 0 1 TSPAN13 chr7:16823042 3'AG 16823042 Downstream 52bp
chr17 38151727 38151727 1 + G A LUAD 38151726 + 38151706 38151746 41 CGAATCTCCTTGGCTGACATCGCCCAGAAGCTGCAGTTGGA CGAATCTCCTTGGCTGACATCACCCAGAAGCTGCAGTTGGA < 41bp 1 0.273023012116337 1 0.279764145612717 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38151726 chr17:38151727 nonsynonymous SNV 0.872 3 22 hm5C_associated_SNPs_27420 0 0 1 0 2 PSMD3 chr17:38151677 3'AG 38151677 Downstream 51bp
chr17 38151727 38151727 1 + G A LUAD 38151726 + 38151706 38151746 41 CGAATCTCCTTGGCTGACATCGCCCAGAAGCTGCAGTTGGA CGAATCTCCTTGGCTGACATCACCCAGAAGCTGCAGTTGGA < 41bp 1 0.273023012116337 1 0.279764145612717 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38151726 chr17:38151727 nonsynonymous SNV 0.872 3 22 hm5C_associated_SNPs_27420 0 0 1 0 2 PSMD3 chr17:38151780 5'GT 38151780 Upstream 54bp
chr7 129939236 129939236 1 + G T LUAD 129939222 + 129939202 129939242 41 ATCCCAGGGCTTAGAGTACGCAGTGACAATTGAGGACCTGC ATCCCAGGGCTTAGAGTACGCAGTGACAATTGAGTACCTGC < 41bp 1 0.57497905774631 1 0.258467495441437 experiment 0.850041884507381 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129939222 chr7:129939236 nonsynonymous SNV 0.478 4 35 hm5C_associated_SNPs_27422 0 0 0 0 1 CPA4 chr7:129939244 5'GT 129939244 Upstream 9bp
chr5 74865234 74865234 1 + G A LUAD 74865247 + 74865227 74865267 41 TGACATGGATGCTTTCTATGCAGCTGTAGAAATGAGGGACA TGACATGAATGCTTTCTATGCAGCTGTAGAAATGAGGGACA < 41bp 1 0.701443480837826 1 0.198588460683823 experiment 0.597113038324348 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLK ENSG00000122008 CDS Human protein_coding chr5:74865247 chr5:74865234 nonsynonymous SNV 1.000 5 8 hm5C_associated_SNPs_27425 0 0 0 1 1 POLK chr5:74865165 3'AG 74865165 Downstream 70bp
chr4 123900467 123900467 1 + C G LUAD 123900482 + 123900462 123900502 41 TTACTCTGAAGGATTTCTTGCAGGCAATGAATGATATCAGA TTACTGTGAAGGATTTCTTGCAGGCAATGAATGATATCAGA < 41bp 1 0.313669850960905 1 0.393336474895477 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SPATA5 ENSG00000145375 CDS Human protein_coding chr4:123900482 chr4:123900467 nonsynonymous SNV 0.999 1 6 hm5C_associated_SNPs_27426 0 0 1 0 2 SPATA5 chr4:123900387 3'AG 123900387 Downstream 81bp
chr4 123900467 123900467 1 + C G LUAD 123900482 + 123900462 123900502 41 TTACTCTGAAGGATTTCTTGCAGGCAATGAATGATATCAGA TTACTGTGAAGGATTTCTTGCAGGCAATGAATGATATCAGA < 41bp 1 0.313669850960905 1 0.393336474895477 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SPATA5 ENSG00000145375 CDS Human protein_coding chr4:123900482 chr4:123900467 nonsynonymous SNV 0.999 1 6 hm5C_associated_SNPs_27426 0 0 1 0 2 SPATA5 chr4:123900541 5'GT 123900541 Upstream 75bp
chr17 37358692 37358692 1 + G T LUAD 37358680 + 37358660 37358700 41 TGGCCCGCCGGAAGGGCAGGCACATGGGCATAGGTAAGTGT TGGCCCGCCGGAAGGGCAGGCACATGGGCATATGTAAGTGT < 41bp 1 0.339111302422185 1 0.27501368522644 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358680 chr17:37358692 nonsynonymous SNV 0.977 4 33 hm5C_associated_SNPs_27427 0 0 1 0 1 RPL19 chr17:37358692 5'GT 37358692 Upstream 1bp
chr17 37358692 37358692 1 + G T LUAD 37358688 + 37358668 37358708 41 CGGAAGGGCAGGCACATGGGCATAGGTAAGTGTGGTCATCT CGGAAGGGCAGGCACATGGGCATATGTAAGTGTGGTCATCT < 41bp 1 0.12920560479772 1 0.0858438313007355 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358688 chr17:37358692 nonsynonymous SNV 0.977 4 25 hm5C_associated_SNPs_27428 0 0 1 0 1 RPL19 chr17:37358692 5'GT 37358692 Upstream 1bp
chr12 58174040 58174040 1 + G T LUAD 58174050 + 58174030 58174070 41 TCTCTCAGGGGGGGATGTTACCATCACTGACCTGCCCCTGG TCTCTCAGGGTGGGATGTTACCATCACTGACCTGCCCCTGG < 41bp 1 0.306403254391071 1 0.14102166891098 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EEF1AKMT3 ENSG00000123427 CDS Human protein_coding chr12:58174050 chr12:58174040 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_27429 0 0 1 0 1 EEF1AKMT3 chr12:58174038 3'AG 58174038 Downstream 3bp
chr5 142264928 142264928 1 + T G LUAD 142264910 + 142264890 142264930 41 ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTT ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAAGTT < 41bp 1 0.11041127291807 1 0.383642792701721 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142264910 chr5:142264928 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_27431 0 0 1 0 2 ARHGAP26 chr5:142264863 3'AG 142264863 Downstream 66bp
chr5 142264928 142264928 1 + T G LUAD 142264910 + 142264890 142264930 41 ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTT ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAAGTT < 41bp 1 0.11041127291807 1 0.383642792701721 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142264910 chr5:142264928 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_27431 0 0 1 0 2 ARHGAP26 chr5:142264964 5'GT 142264964 Upstream 37bp
chr6 31598920 31598920 1 + G A LUAD 31598935 + 31598915 31598955 41 GGAGCGAGACTCCTCCAGTACCTCCCCCACCACCCTATCTG GGAGCAAGACTCCTCCAGTACCTCCCCCACCACCCTATCTG < 41bp 1 0.101623079567158 1 0.0378304421901703 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31598935 chr6:31598920 nonsynonymous SNV 0.995 3 6 hm5C_associated_SNPs_27433 0 0 1 0 1 PRRC2A chr6:31598916 3'AG 31598916 Downstream 5bp
chr6 31598920 31598920 1 + G A LUAD 31598940 + 31598920 31598960 41 GAGACTCCTCCAGTACCTCCCCCACCACCCTATCTGGCCAG AAGACTCCTCCAGTACCTCCCCCACCACCCTATCTGGCCAG < 41bp 1 0.143098591214195 1 0.583160281181335 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31598940 chr6:31598920 nonsynonymous SNV 0.995 3 1 hm5C_associated_SNPs_27434 0 0 1 0 1 PRRC2A chr6:31598916 3'AG 31598916 Downstream 5bp
chr17 16342885 16342885 1 + C G LUAD 16342874 + 16342854 16342894 41 GAAGCGATAACTGACGACGTCTAATGTCTATCTGACCGCAG GAAGCGATAACTGACGACGTCTAATGTCTATGTGACCGCAG < 41bp 1 0.238778173910938 1 0.183290958404541 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342874 chr17:16342885 . . 0 32 hm5C_associated_SNPs_27435 0 0 1 0 1 LRRC75A-AS1;SNORD49B chr17:16342842 3'AG 16342842 Downstream 44bp
chr17 16342885 16342885 1 + C G LUAD 16342881 + 16342861 16342901 41 TAACTGACGACGTCTAATGTCTATCTGACCGCAGTCGCTGA TAACTGACGACGTCTAATGTCTATGTGACCGCAGTCGCTGA < 41bp 1 0.287616380410548 1 0.185306340456009 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342881 chr17:16342885 . . 0 25 hm5C_associated_SNPs_27436 0 0 1 0 1 LRRC75A-AS1;SNORD49B chr17:16342842 3'AG 16342842 Downstream 44bp
chr11 107917073 107917073 1 + G C LUAD 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTCAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC < 41bp 1 0.434882997173014 1 0.47705215215683 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917073 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_27437 0 0 1 0 2 CUL5 chr11:107916997 3'AG 107916997 Downstream 77bp
chr11 107917073 107917073 1 + G C LUAD 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTCAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC < 41bp 1 0.434882997173014 1 0.47705215215683 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917073 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_27437 0 0 1 0 2 CUL5 chr11:107917096 5'GT 107917096 Upstream 24bp
chr12 102120165 102120165 1 + C T LUAD 102120175 + 102120155 102120195 41 GACTGCATGTCATCAAGCACCTGAACAGGTTCACAAGCATA GACTGCATGTTATCAAGCACCTGAACAGGTTCACAAGCATA < 41bp 1 0.630518280265929 1 0.132444977760315 experiment 0.738963439468141 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHPT1 ENSG00000111666 CDS Human protein_coding chr12:102120175 chr12:102120165 nonsynonymous SNV 0.985 1 11 hm5C_associated_SNPs_27438 0 0 1 0 2 CHPT1 chr12:102120072 3'AG 102120072 Downstream 94bp
chr12 102120165 102120165 1 + C T LUAD 102120175 + 102120155 102120195 41 GACTGCATGTCATCAAGCACCTGAACAGGTTCACAAGCATA GACTGCATGTTATCAAGCACCTGAACAGGTTCACAAGCATA < 41bp 1 0.630518280265929 1 0.132444977760315 experiment 0.738963439468141 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHPT1 ENSG00000111666 CDS Human protein_coding chr12:102120175 chr12:102120165 nonsynonymous SNV 0.985 1 11 hm5C_associated_SNPs_27438 0 0 1 0 2 CHPT1 chr12:102120182 5'GT 102120182 Upstream 18bp
chr3 183369006 183369006 1 + G A LUAD 183369020 + 183369000 183369040 41 CATGAAGCAAGACGGTACCACATACTTGGGAATGAAATGAT CATGAAACAAGACGGTACCACATACTTGGGAATGAAATGAT < 41bp 1 0.120852241052267 1 0.182456225156784 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLHL24 ENSG00000114796 CDS Human protein_coding chr3:183369020 chr3:183369006 nonsynonymous SNV 0.998 1 7 hm5C_associated_SNPs_27440 0 0 1 0 1 KLHL24 chr3:183369064 5'GT 183369064 Upstream 59bp
chr6 44360513 44360513 1 + C G LUAD 44360506 + 44360486 44360526 41 ATGCCAACTCAGTGGAGGACCATTGCTCCAATCATTGGAAG ATGCCAACTCAGTGGAGGACCATTGCTGCAATCATTGGAAG < 41bp 1 0.295884740150729 1 0.22822043299675 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC5L ENSG00000096401 CDS Human protein_coding chr6:44360506 chr6:44360513 nonsynonymous SNV 0.998 4 28 hm5C_associated_SNPs_27442 0 0 1 0 1 CDC5L chr6:44360565 5'GT 44360565 Upstream 53bp
chr17 47904772 47904772 1 + G C LUAD 47904766 + 47904746 47904786 41 CCATTGTTCTCCCTCAGGACCTGATTGATGAGTGGATAGCC CCATTGTTCTCCCTCAGGACCTGATTCATGAGTGGATAGCC < 41bp 1 0.204041602331219 1 0.0221716463565826 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KAT7 ENSG00000136504 CDS Human protein_coding chr17:47904766 chr17:47904772 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_27443 0 0 1 0 1 KAT7 chr17:47904763 3'AG 47904763 Downstream 10bp
chr5 112164574 112164574 1 + A C LUAD 112164560 + 112164540 112164580 41 GATTAATTTGCAGGTTATTGCGAGTGTTTTGAGGAATTTGT GATTAATTTGCAGGTTATTGCGAGTGTTTTGAGGCATTTGT < 41bp 1 0.201742355229343 1 0.43724599480629 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APC ENSG00000134982;ENSG00000258864 CDS Human other chr5:112164560 chr5:112164574 nonsynonymous SNV 1.000 5 35 hm5C_associated_SNPs_27444 0 0 1 0 2 APC chr5:112164553 3'AG 112164553 Downstream 22bp
chr5 112164574 112164574 1 + A C LUAD 112164560 + 112164540 112164580 41 GATTAATTTGCAGGTTATTGCGAGTGTTTTGAGGAATTTGT GATTAATTTGCAGGTTATTGCGAGTGTTTTGAGGCATTTGT < 41bp 1 0.201742355229343 1 0.43724599480629 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APC ENSG00000134982;ENSG00000258864 CDS Human other chr5:112164560 chr5:112164574 nonsynonymous SNV 1.000 5 35 hm5C_associated_SNPs_27444 0 0 1 0 2 APC chr5:112164669 5'GT 112164669 Upstream 96bp
chr1 229783448 229783448 1 + C T LUAD 229783428 + 229783408 229783448 41 TCCCTTTGGACCATCTGAAGCCGCTGGAGTATGGAAGCGTC TCCCTTTGGACCATCTGAAGCCGCTGGAGTATGGAAGCGTT < 41bp 1 0.248715182570428 1 0.158735692501068 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control URB2 ENSG00000135763 CDS Human protein_coding chr1:229783428 chr1:229783448 synonymous SNV . 0 41 hm5C_associated_SNPs_27445 0 0 1 0 1 URB2 chr1:229783499 5'GT 229783499 Upstream 52bp
chr14 21963405 21963405 1 + G A LUAD 21963397 + 21963377 21963417 41 TCTTCTCACAGGTTGAGTCTCCTTCTCAGATGGATGTTGAA TCTTCTCACAGGTTGAGTCTCCTTCTCAAATGGATGTTGAA < 41bp 1 0.0210149110494532 1 0.0469260513782501 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOX4 ENSG00000092203 CDS Human protein_coding chr14:21963397 chr14:21963405 synonymous SNV . 0 29 hm5C_associated_SNPs_27446 0 0 1 0 1 TOX4 chr14:21963388 3'AG 21963388 Downstream 18bp
chr14 21963405 21963405 1 + G A LUAD 21963398 + 21963378 21963418 41 CTTCTCACAGGTTGAGTCTCCTTCTCAGATGGATGTTGAAT CTTCTCACAGGTTGAGTCTCCTTCTCAAATGGATGTTGAAT < 41bp 1 0.0811123161295936 1 0.0265757739543915 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOX4 ENSG00000092203 CDS Human protein_coding chr14:21963398 chr14:21963405 synonymous SNV . 0 28 hm5C_associated_SNPs_27447 0 0 1 0 1 TOX4 chr14:21963388 3'AG 21963388 Downstream 18bp
chr17 40716076 40716076 1 + C T LUAD 40716079 + 40716059 40716099 41 TCCTTGACTTTTGATGTCATCCCCCTGCTGGACCCCTATGG TCCTTGACTTTTGATGTTATCCCCCTGCTGGACCCCTATGG < 41bp 1 0.293325678627816 1 0.133931934833527 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COASY ENSG00000068120 CDS Human protein_coding chr17:40716079 chr17:40716076 synonymous SNV . 0 18 hm5C_associated_SNPs_27448 0 0 1 0 1 COASY chr17:40715979 3'AG 40715979 Downstream 98bp
chr9 130420698 130420698 1 + G C LUAD 130420683 + 130420663 130420703 41 ATATCAATAAGCGCAGAGAGCCGCTCCCCAGCCTGGAGGCT ATATCAATAAGCGCAGAGAGCCGCTCCCCAGCCTGCAGGCT < 41bp 1 0.12267622259876 1 0.0853905379772186 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130420683 chr9:130420698 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_27452 0 0 1 0 2 STXBP1 chr9:130420654 3'AG 130420654 Downstream 45bp
chr9 130420698 130420698 1 + G C LUAD 130420683 + 130420663 130420703 41 ATATCAATAAGCGCAGAGAGCCGCTCCCCAGCCTGGAGGCT ATATCAATAAGCGCAGAGAGCCGCTCCCCAGCCTGCAGGCT < 41bp 1 0.12267622259876 1 0.0853905379772186 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130420683 chr9:130420698 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_27452 0 0 1 0 2 STXBP1 chr9:130420730 5'GT 130420730 Upstream 33bp
chr4 1742645 1742645 1 + G T LUAD 1742652 + 1742632 1742672 41 TCTGAACTCCATGGAGAAGTCCTTCTCCGACCTCTTCAAGC TCTGAACTCCATGTAGAAGTCCTTCTCCGACCTCTTCAAGC < 41bp 1 0.018445272321328 1 0.0165710747241974 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TACC3 ENSG00000013810 CDS Human protein_coding chr4:1742652 chr4:1742645 stopgain 0.997 1 14 hm5C_associated_SNPs_27453 0 0 1 0 2 TACC3 chr4:1742553 3'AG 1742553 Downstream 93bp
chr4 1742645 1742645 1 + G T LUAD 1742652 + 1742632 1742672 41 TCTGAACTCCATGGAGAAGTCCTTCTCCGACCTCTTCAAGC TCTGAACTCCATGTAGAAGTCCTTCTCCGACCTCTTCAAGC < 41bp 1 0.018445272321328 1 0.0165710747241974 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TACC3 ENSG00000013810 CDS Human protein_coding chr4:1742652 chr4:1742645 stopgain 0.997 1 14 hm5C_associated_SNPs_27453 0 0 1 0 2 TACC3 chr4:1742713 5'GT 1742713 Upstream 69bp
chr6 42976164 42976164 1 + T A LUAD 42976172 + 42976152 42976192 41 TCCTCATCCGTGTCCTACTTCCCCTTCACAAGGTCAAGTCC TCCTCATCCGTGACCTACTTCCCCTTCACAAGGTCAAGTCC < 41bp 1 0.196696549341606 1 0.0876607000827789 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42976172 chr6:42976164 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_27454 0 0 1 0 2 PPP2R5D chr6:42976105 3'AG 42976105 Downstream 60bp
chr6 42976164 42976164 1 + T A LUAD 42976172 + 42976152 42976192 41 TCCTCATCCGTGTCCTACTTCCCCTTCACAAGGTCAAGTCC TCCTCATCCGTGACCTACTTCCCCTTCACAAGGTCAAGTCC < 41bp 1 0.196696549341606 1 0.0876607000827789 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42976172 chr6:42976164 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_27454 0 0 1 0 2 PPP2R5D chr6:42976213 5'GT 42976213 Upstream 50bp
chr12 132334399 132334399 1 + C T LUAD 132334394 + 132334374 132334414 41 ATAACGTAGAGGAAGGATACCCGCGCCCCGTCTCCGACTTC ATAACGTAGAGGAAGGATACCCGCGTCCCGTCTCCGACTTC < 41bp 1 0.308455225536262 1 0.0506669878959656 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MMP17 ENSG00000198598 CDS Human protein_coding chr12:132334394 chr12:132334399 synonymous SNV . 0 26 hm5C_associated_SNPs_27455 0 0 1 0 1 MMP17 chr12:132334347 3'AG 132334347 Downstream 53bp
chr1 44071216 44071216 1 + G T LUAD 44071222 + 44071202 44071242 41 GGTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGG GGTTCTACATTGTTTTGGTGCCCATTGACCGTGTGGGCGGG < 41bp 1 0.0868171702045869 1 0.06928950548172 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44071222 chr1:44071216 nonsynonymous SNV 0.988 2 15 hm5C_associated_SNPs_27457 0 0 1 0 2 PTPRF chr1:44071200 3'AG 44071200 Downstream 17bp
chr1 44071216 44071216 1 + G T LUAD 44071222 + 44071202 44071242 41 GGTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGG GGTTCTACATTGTTTTGGTGCCCATTGACCGTGTGGGCGGG < 41bp 1 0.0868171702045869 1 0.06928950548172 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44071222 chr1:44071216 nonsynonymous SNV 0.988 2 15 hm5C_associated_SNPs_27457 0 0 1 0 2 PTPRF chr1:44071293 5'GT 44071293 Upstream 78bp
chr1 44071216 44071216 1 + G T LUAD 44071223 + 44071203 44071243 41 GTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGGA GTTCTACATTGTTTTGGTGCCCATTGACCGTGTGGGCGGGA < 41bp 1 0.0400763863200327 1 0.127997398376465 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44071223 chr1:44071216 nonsynonymous SNV 0.988 2 14 hm5C_associated_SNPs_27458 0 0 1 0 2 PTPRF chr1:44071200 3'AG 44071200 Downstream 17bp
chr1 44071216 44071216 1 + G T LUAD 44071223 + 44071203 44071243 41 GTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGGA GTTCTACATTGTTTTGGTGCCCATTGACCGTGTGGGCGGGA < 41bp 1 0.0400763863200327 1 0.127997398376465 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44071223 chr1:44071216 nonsynonymous SNV 0.988 2 14 hm5C_associated_SNPs_27458 0 0 1 0 2 PTPRF chr1:44071293 5'GT 44071293 Upstream 78bp
chr2 183616853 183616853 1 + C T LUAD 183616850 + 183616830 183616870 41 AGTTACGAAGAGCATCAAATCTTCTTTATGGTCAGCTTAAG AGTTACGAAGAGCATCAAATCTTTTTTATGGTCAGCTTAAG < 41bp 1 0.206702642113612 1 0.134610295295715 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183616850 chr2:183616853 nonsynonymous SNV 0.985 2 24 hm5C_associated_SNPs_27459 0 0 1 0 2 DNAJC10 chr2:183616799 3'AG 183616799 Downstream 55bp
chr2 183616853 183616853 1 + C T LUAD 183616850 + 183616830 183616870 41 AGTTACGAAGAGCATCAAATCTTCTTTATGGTCAGCTTAAG AGTTACGAAGAGCATCAAATCTTTTTTATGGTCAGCTTAAG < 41bp 1 0.206702642113612 1 0.134610295295715 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183616850 chr2:183616853 nonsynonymous SNV 0.985 2 24 hm5C_associated_SNPs_27459 0 0 1 0 2 DNAJC10 chr2:183616915 5'GT 183616915 Upstream 63bp
chr21 42629148 42629148 1 + C T LUAD 42629163 + 42629143 42629183 41 TTTCCCCATCCACAAATGCGCTGGTGATCGGTGCCACGGTG TTTCCTCATCCACAAATGCGCTGGTGATCGGTGCCACGGTG < 41bp 1 0.559559048874507 1 0.138466894626617 experiment 0.880881902250985 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BACE2 ENSG00000182240 CDS Human protein_coding chr21:42629163 chr21:42629148 nonsynonymous SNV 0.860 0 6 hm5C_associated_SNPs_27460 0 0 1 0 1 BACE2 chr21:42629085 3'AG 42629085 Downstream 64bp
chr16 712767 712767 1 + A T LUAD 712768 + 712748 712788 41 GGACATGGGCGTCGTGGGCACCACGGCGGGCACGCTGTGGT GGACATGGGCGTCGTGGGCTCCACGGCGGGCACGCTGTGGT < 41bp 1 0.257585352226693 1 0.508145868778229 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:712768 chr16:712767 nonsynonymous SNV 0.081 1 20 hm5C_associated_SNPs_27462 0 0 1 0 3 WDR90 chr16:712673 3'AG 712673 Downstream 95bp
chr16 712767 712767 1 + A T LUAD 712768 + 712748 712788 41 GGACATGGGCGTCGTGGGCACCACGGCGGGCACGCTGTGGT GGACATGGGCGTCGTGGGCTCCACGGCGGGCACGCTGTGGT < 41bp 1 0.257585352226693 1 0.508145868778229 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:712768 chr16:712767 nonsynonymous SNV 0.081 1 20 hm5C_associated_SNPs_27462 0 0 1 0 3 WDR90 chr16:712679 3'AG 712679 Downstream 89bp
chr16 712767 712767 1 + A T LUAD 712768 + 712748 712788 41 GGACATGGGCGTCGTGGGCACCACGGCGGGCACGCTGTGGT GGACATGGGCGTCGTGGGCTCCACGGCGGGCACGCTGTGGT < 41bp 1 0.257585352226693 1 0.508145868778229 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:712768 chr16:712767 nonsynonymous SNV 0.081 1 20 hm5C_associated_SNPs_27462 0 0 1 0 3 WDR90 chr16:712844 5'GT 712844 Upstream 78bp
chr7 135333220 135333220 1 + A G LUAD 135333200 + 135333180 135333220 41 GAGAATCACTACAAAAGAAACTTCTGGACATTGAAGGATTA GAGAATCACTACAAAAGAAACTTCTGGACATTGAAGGATTG < 41bp 1 0.0667212223918171 1 0.184102326631546 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135333200 chr7:135333220 synonymous SNV . 0 41 hm5C_associated_SNPs_27463 0 0 1 0 1 NUP205 chr7:135333152 3'AG 135333152 Downstream 69bp
chr3 107524268 107524268 1 + G T LUAD 107524266 + 107524246 107524286 41 ATGGACAGCCAAAAGAAATGCCGCAGGCTCCTGTACTTATT ATGGACAGCCAAAAGAAATGCCTCAGGCTCCTGTACTTATT < 41bp 1 0.218807876941333 1 0.0968212485313416 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BBX ENSG00000114439 CDS Human protein_coding chr3:107524266 chr3:107524268 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_27465 0 0 1 0 1 BBX chr3:107524217 3'AG 107524217 Downstream 52bp
chr7 142458452 142458452 1 + C A LUAD 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATGACAAGATCGTTGGGGGCTACAAATGTGA < 41bp 1 0.180455150854205 1 0.108464062213898 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458452 nonsynonymous SNV 0.033 2 36 hm5C_associated_SNPs_27466 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 47bp
chr7 142458452 142458452 1 + C A LUAD 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGTTGGGGGCTACAAATGTGAGGAGAATTC < 41bp 1 0.376784977994652 1 0.41112431883812 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458452 nonsynonymous SNV 0.033 2 27 hm5C_associated_SNPs_27467 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 47bp
chr7 142458452 142458452 1 + C A LUAD 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGTTGGGGGCTACAAATGTGAGGAGAATTCTGT < 41bp 1 0.147190775147619 1 0.443942308425903 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458452 nonsynonymous SNV 0.033 2 24 hm5C_associated_SNPs_27468 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 47bp
chr7 142458452 142458452 1 + C A LUAD 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAAATGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC < 41bp 1 0.186032538570562 1 0.161186784505844 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458452 nonsynonymous SNV 0.033 2 7 hm5C_associated_SNPs_27469 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 47bp
chr7 142458452 142458452 1 + C A LUAD 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AAATGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA < 41bp 1 0.129873470299915 1 0.204436182975769 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458452 nonsynonymous SNV 0.033 2 3 hm5C_associated_SNPs_27470 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 47bp
chr7 142458452 142458452 1 + C A LUAD 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT AATGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT < 41bp 1 0.091936591324055 1 0.124690115451813 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458452 nonsynonymous SNV 0.033 2 2 hm5C_associated_SNPs_27471 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 47bp
chr7 142458452 142458452 1 + C A LUAD 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT ATGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT < 41bp 1 0.0164707121127987 1 0.0630029141902924 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458452 nonsynonymous SNV 0.033 2 1 hm5C_associated_SNPs_27472 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 47bp
chr20 18142502 18142502 1 + G C LUAD 18142508 + 18142488 18142528 41 CCATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCGG CCATCATTACTGTTCAGGGACTTAGAAAACGAGCAAGTCGG < 41bp 1 0.107420275569344 1 0.0245347321033478 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KAT14 ENSG00000149474 CDS Human protein_coding chr20:18142508 chr20:18142502 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_27474 0 0 1 0 2 KAT14 chr20:18142464 3'AG 18142464 Downstream 39bp
chr20 18142502 18142502 1 + G C LUAD 18142508 + 18142488 18142528 41 CCATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCGG CCATCATTACTGTTCAGGGACTTAGAAAACGAGCAAGTCGG < 41bp 1 0.107420275569344 1 0.0245347321033478 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KAT14 ENSG00000149474 CDS Human protein_coding chr20:18142508 chr20:18142502 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_27474 0 0 1 0 2 KAT14 chr20:18142467 3'AG 18142467 Downstream 36bp
chr11 64787927 64787927 1 + A G LUAD 64787908 + 64787888 64787928 41 CAGCGCCTGGCCGGAGCAACCCTCCTCATCTTTGCTAATAA CAGCGCCTGGCCGGAGCAACCCTCCTCATCTTTGCTAATGA < 41bp 1 0.0414157637444607 1 0.097655713558197 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARL2 ENSG00000213465 CDS Human protein_coding chr11:64787908 chr11:64787927 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_27475 0 0 1 0 2 ARL2 chr11:64787891 3'AG 64787891 Downstream 37bp
chr11 64787927 64787927 1 + A G LUAD 64787908 + 64787888 64787928 41 CAGCGCCTGGCCGGAGCAACCCTCCTCATCTTTGCTAATAA CAGCGCCTGGCCGGAGCAACCCTCCTCATCTTTGCTAATGA < 41bp 1 0.0414157637444607 1 0.097655713558197 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARL2 ENSG00000213465 CDS Human protein_coding chr11:64787908 chr11:64787927 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_27475 0 0 1 0 2 ARL2 chr11:64787971 5'GT 64787971 Upstream 45bp
chr10 292708 292708 1 + C T LUAD 292709 + 292689 292729 41 TTATGTGTTTTTCCTAGGGCCTGGATTCCTTCTGAAAACAT TTATGTGTTTTTCCTAGGGTCTGGATTCCTTCTGAAAACAT < 41bp 1 0.72637922641517 1 0.479178011417389 experiment 0.54724154716966 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZMYND11 ENSG00000015171 CDS Human protein_coding chr10:292709 chr10:292708 nonsynonymous SNV 0.925 2 20 hm5C_associated_SNPs_27476 0 0 0 0 1 ZMYND11 chr10:292706 3'AG 292706 Downstream 3bp
chr7 150817200 150817200 1 + A G LUAD 150817203 + 150817183 150817223 41 CCCCCACACCCATCCGAAAGCAGTCCAAGCGGCGCTCCAAC CCCCCACACCCATCCGAGAGCAGTCCAAGCGGCGCTCCAAC < 41bp 1 0.0975039777302168 1 0.804827928543091 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150817203 chr7:150817200 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_27477 0 0 1 0 1 AGAP3 chr7:150817232 5'GT 150817232 Upstream 33bp
chr11 46693827 46693827 1 + C G LUAD 46693815 + 46693795 46693835 41 TCCGGTACAGGACTCATTACCAGAGAAGCTGGCTGTGCATG TCCGGTACAGGACTCATTACCAGAGAAGCTGGGTGTGCATG < 41bp 1 0.627294834784137 1 0.947098314762115 experiment 0.745410330431726 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATG13 ENSG00000175224 CDS Human protein_coding chr11:46693815 chr11:46693827 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_27478 0 0 1 0 1 ATG13 chr11:46693805 3'AG 46693805 Downstream 23bp
chr7 79828668 79828668 1 + G T LUAD 79828675 + 79828655 79828695 41 TTCAACAGATCCCGAGAGTACCAGCTTAATGATTCTGCAGC TTCAACAGATCCCTAGAGTACCAGCTTAATGATTCTGCAGC < 41bp 1 0.219709031843121 1 0.0550460815429688 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79828675 chr7:79828668 nonsynonymous SNV 1.000 5 14 hm5C_associated_SNPs_27479 0 0 1 0 1 GNAI1 chr7:79828698 5'GT 79828698 Upstream 31bp
chr7 79828668 79828668 1 + G T LUAD 79828676 + 79828656 79828696 41 TCAACAGATCCCGAGAGTACCAGCTTAATGATTCTGCAGCA TCAACAGATCCCTAGAGTACCAGCTTAATGATTCTGCAGCA < 41bp 1 0.589597299568 1 0.349731385707855 experiment 0.820805400864001 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79828676 chr7:79828668 nonsynonymous SNV 1.000 5 13 hm5C_associated_SNPs_27480 0 0 1 0 1 GNAI1 chr7:79828698 5'GT 79828698 Upstream 31bp
chrX 103411570 103411570 1 + G C LUAD 103411562 + 103411542 103411582 41 CCTCCTCGCGGGGTGGGCACCTGCCCGAGCGAGGAGCCGGG CCTCCTCGCGGGGTGGGCACCTGCCCGACCGAGGAGCCGGG < 41bp 1 0.783410061634734 1 0.273033142089844 experiment 0.433179876730531 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM199X ENSG00000123575 CDS Human protein_coding chrX:103411562 chrX:103411570 nonsynonymous SNV 0.999 2 29 hm5C_associated_SNPs_27481 0 0 1 0 1 FAM199X chrX:103411663 5'GT 103411663 Upstream 94bp
chr8 77619809 77619809 1 + G T LUAD 77619825 + 77619805 77619845 41 TCCGGCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCC TCCGTCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCC < 41bp 1 0.181466984919398 1 0.510817289352417 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77619825 chr8:77619809 synonymous SNV . 0 5 hm5C_associated_SNPs_27482 0 0 1 0 1 ZFHX4 chr8:77619781 3'AG 77619781 Downstream 29bp
chr7 128846155 128846155 1 + T G LUAD 128846171 + 128846151 128846191 41 CACCTGCTCACCTGGTCACTCCCCTTTGTCCTCACTGTGGC CACCGGCTCACCTGGTCACTCCCCTTTGTCCTCACTGTGGC < 41bp 1 0.269285491438611 1 0.0311254858970642 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMO ENSG00000128602 CDS Human protein_coding chr7:128846171 chr7:128846155 nonsynonymous SNV 0.997 5 5 hm5C_associated_SNPs_27483 0 0 0 0 1 SMO chr7:128846210 5'GT 128846210 Upstream 56bp
chr1 231700291 231700291 1 + G A LUAD 231700298 + 231700278 231700318 41 CCTCTGATGCACAGGATAAGCAGTTTGGTACTTGGAGACTG CCTCTGATGCACAAGATAAGCAGTTTGGTACTTGGAGACTG < 41bp 1 0.449026665809192 1 0.0966461300849915 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TSNAX ENSG00000116918 CDS Human protein_coding chr1:231700298 chr1:231700291 synonymous SNV . 0 14 hm5C_associated_SNPs_27484 0 0 1 0 1 TSNAX chr1:231700274 3'AG 231700274 Downstream 18bp
chr1 161761933 161761933 1 + G T LUAD 161761929 + 161761909 161761949 41 TCCAGAAAATGGACTGACTCCAAAGAAAAAAATTCAGGTGA TCCAGAAAATGGACTGACTCCAAATAAAAAAATTCAGGTGA < 41bp 1 0.24769004749794 1 0.749476850032806 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161761929 chr1:161761933 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_27489 0 0 1 0 1 ATF6 chr1:161761914 3'AG 161761914 Downstream 20bp
chr16 67917910 67917910 1 + G T LUAD 67917892 + 67917872 67917912 41 GCCGTGATGCACCTGGACCACAGTGACCCCATCACTCGGGA GCCGTGATGCACCTGGACCACAGTGACCCCATCACTCGTGA < 41bp 1 0.566229277183758 1 0.30531769990921 experiment 0.867541445632484 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67917892 chr16:67917910 synonymous SNV . 0 39 hm5C_associated_SNPs_27490 0 0 1 0 1 EDC4 chr16:67917859 3'AG 67917859 Downstream 52bp
chr1 231401781 231401781 1 + A C LUAD 231401783 + 231401763 231401803 41 TTCTGAATATTGTGATGGAGCCATTTTTTAAAAGAGAAGTT TTCTGAATATTGTGATGGCGCCATTTTTTAAAAGAGAAGTT < 41bp 1 0.0697179821722929 1 0.0602617561817169 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231401783 chr1:231401781 nonsynonymous SNV 1.000 5 19 hm5C_associated_SNPs_27492 0 0 1 0 1 GNPAT chr1:231401760 3'AG 231401760 Downstream 22bp
chr11 66050518 66050518 1 + G A LUAD 66050523 + 66050503 66050543 41 CAGCTGGTGGTCCCAGAATACTCCATCCACGGCCTCTTCTG CAGCTGGTGGTCCCAAAATACTCCATCCACGGCCTCTTCTG < 41bp 1 0.760119041360192 1 0.942692399024963 experiment 0.479761917279616 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CNIH2 ENSG00000174871 CDS Human protein_coding chr11:66050523 chr11:66050518 nonsynonymous SNV 0.994 3 16 hm5C_associated_SNPs_27493 0 0 0 1 1 CNIH2 chr11:66050506 3'AG 66050506 Downstream 13bp
chr17 48433491 48433491 1 + C A LUAD 48433472 + 48433452 48433492 41 TTCCACACGGTGCTGGAGAACAGCCTGGCCTGTGAGACCCT TTCCACACGGTGCTGGAGAACAGCCTGGCCTGTGAGACCAT < 41bp 1 0.422875953455978 1 0.328668534755707 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48433472 chr17:48433491 nonsynonymous SNV 0.991 1 40 hm5C_associated_SNPs_27494 0 0 1 0 1 XYLT2 chr17:48433446 3'AG 48433446 Downstream 46bp
chr16 601521 601521 1 + G T LUAD 601540 + 601520 601560 41 GGCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGC GTCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGC < 41bp 1 0.0286059199197363 1 0.0536355376243591 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601540 chr16:601521 synonymous SNV . 0 2 hm5C_associated_SNPs_27495 0 0 1 0 1 CAPN15 chr16:601512 3'AG 601512 Downstream 10bp
chrX 123191729 123191729 1 + A G LUAD 123191735 + 123191715 123191755 41 GGCTCTTCAGTCGTAGAGATCCAGAGGAGGATGGAATGATG GGCTCTTCAGTCGTGGAGATCCAGAGGAGGATGGAATGATG < 41bp 1 0.521068215636276 1 0.659357190132141 experiment 0.957863568727448 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123191735 chrX:123191729 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_27502 0 0 1 0 2 STAG2 chrX:123191716 3'AG 123191716 Downstream 14bp
chrX 123191729 123191729 1 + A G LUAD 123191735 + 123191715 123191755 41 GGCTCTTCAGTCGTAGAGATCCAGAGGAGGATGGAATGATG GGCTCTTCAGTCGTGGAGATCCAGAGGAGGATGGAATGATG < 41bp 1 0.521068215636276 1 0.659357190132141 experiment 0.957863568727448 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123191735 chrX:123191729 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_27502 0 0 1 0 2 STAG2 chrX:123191827 5'GT 123191827 Upstream 99bp
chr9 91963091 91963091 1 + G A LUAD 91963073 + 91963053 91963093 41 AGCTTTTACCAGTGATGACACACAAGATGGAGAGAGTGGTG AGCTTTTACCAGTGATGACACACAAGATGGAGAGAGTGATG < 41bp 1 0.783567600204004 1 0.166704148054123 experiment 0.432864799591992 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SECISBP2 ENSG00000187742 CDS Human protein_coding chr9:91963073 chr9:91963091 nonsynonymous SNV 0.088 0 39 hm5C_associated_SNPs_27506 0 0 1 0 2 SECISBP2 chr9:91962994 3'AG 91962994 Downstream 98bp
chr9 91963091 91963091 1 + G A LUAD 91963073 + 91963053 91963093 41 AGCTTTTACCAGTGATGACACACAAGATGGAGAGAGTGGTG AGCTTTTACCAGTGATGACACACAAGATGGAGAGAGTGATG < 41bp 1 0.783567600204004 1 0.166704148054123 experiment 0.432864799591992 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SECISBP2 ENSG00000187742 CDS Human protein_coding chr9:91963073 chr9:91963091 nonsynonymous SNV 0.088 0 39 hm5C_associated_SNPs_27506 0 0 1 0 2 SECISBP2 chr9:91963129 5'GT 91963129 Upstream 39bp
chr1 114450790 114450790 1 + A C LUAD 114450803 + 114450783 114450823 41 CGAAAACACCCACAACATAACATAAAGATTGGTGAGTTGTT CGAAAACCCCCACAACATAACATAAAGATTGGTGAGTTGTT < 41bp 1 0.277128125689077 1 0.0822244584560394 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCLRE1B ENSG00000118655 CDS Human protein_coding chr1:114450803 chr1:114450790 nonsynonymous SNV 0.902 3 8 hm5C_associated_SNPs_27507 0 0 1 0 1 DCLRE1B chr1:114450813 5'GT 114450813 Upstream 24bp
chr8 97332499 97332499 1 + G T LUAD 97332495 + 97332475 97332515 41 GTCATTGGTTTCCTGGAGGCCATTGTTTGCATAAAATTTGG GTCATTGGTTTCCTGGAGGCCATTTTTTGCATAAAATTTGG < 41bp 1 0.0462849480791435 1 0.0763313174247742 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97332495 chr8:97332499 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_27509 0 0 1 0 1 PTDSS1 chr8:97332573 5'GT 97332573 Upstream 75bp
chr2 46611659 46611659 1 + C T LUAD 46611654 + 46611634 46611674 41 AACCCTTCTTTCAGGCATGGCAAGCCGGCTGCTCGGGCCCT AACCCTTCTTTCAGGCATGGCAAGCTGGCTGCTCGGGCCCT < 41bp 1 0.250416137252471 1 0.317498385906219 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46611654 chr2:46611659 nonsynonymous SNV 0.971 3 26 hm5C_associated_SNPs_27510 0 0 1 0 1 EPAS1 chr2:46611648 3'AG 46611648 Downstream 12bp
chr3 37583978 37583978 1 + T C LUAD 37583980 + 37583960 37584000 41 GGCCAGATGCCCAGGGTCTACTTTGTGCTGCTGGGAGAGAC GGCCAGATGCCCAGGGTCCACTTTGTGCTGCTGGGAGAGAC < 41bp 1 0.298695375041663 1 0.0402573347091675 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37583980 chr3:37583978 nonsynonymous SNV 0.994 4 19 hm5C_associated_SNPs_27511 0 0 0 0 2 ITGA9 chr3:37583916 3'AG 37583916 Downstream 63bp
chr3 37583978 37583978 1 + T C LUAD 37583980 + 37583960 37584000 41 GGCCAGATGCCCAGGGTCTACTTTGTGCTGCTGGGAGAGAC GGCCAGATGCCCAGGGTCCACTTTGTGCTGCTGGGAGAGAC < 41bp 1 0.298695375041663 1 0.0402573347091675 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37583980 chr3:37583978 nonsynonymous SNV 0.994 4 19 hm5C_associated_SNPs_27511 0 0 0 0 2 ITGA9 chr3:37584076 5'GT 37584076 Upstream 99bp
chr17 66352911 66352911 1 + G A LUAD 66352925 + 66352905 66352945 41 AAGTATGCTGAGAAAGCAACCCAGTTCATCCAGCGTGCAAG AAGTATACTGAGAAAGCAACCCAGTTCATCCAGCGTGCAAG < 41bp 1 0.29432054729319 1 0.124501168727875 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARSG ENSG00000141337 CDS Human protein_coding chr17:66352925 chr17:66352911 nonsynonymous SNV 0.138 1 7 hm5C_associated_SNPs_27512 0 0 1 0 1 ARSG chr17:66352945 5'GT 66352945 Upstream 35bp
chr11 126143255 126143255 1 + C T LUAD 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCGATGCTTCTCCCCTGGACCTCCGGTTCA < 41bp 1 0.532746129029717 1 0.132081568241119 experiment 0.934507741940566 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143255 nonsynonymous SNV 0.042 0 20 hm5C_associated_SNPs_27513 0 0 1 0 3 FOXRED1 chr11:126143211 3'AG 126143211 Downstream 45bp
chr11 126143255 126143255 1 + C T LUAD 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCGATGCTTCTCCCCTGGACCTCCGGTTCA < 41bp 1 0.532746129029717 1 0.132081568241119 experiment 0.934507741940566 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143255 nonsynonymous SNV 0.042 0 20 hm5C_associated_SNPs_27513 0 0 1 0 3 FOXRED1 chr11:126143231 3'AG 126143231 Downstream 25bp
chr11 126143255 126143255 1 + C T LUAD 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCGATGCTTCTCCCCTGGACCTCCGGTTCA < 41bp 1 0.532746129029717 1 0.132081568241119 experiment 0.934507741940566 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143255 nonsynonymous SNV 0.042 0 20 hm5C_associated_SNPs_27513 0 0 1 0 3 FOXRED1 chr11:126143349 5'GT 126143349 Upstream 95bp
chr5 167850627 167850627 1 + A G LUAD 167850633 + 167850613 167850653 41 TGCATCCAGCCTGGACTCCTCCACTTCAGCCAGCTTCACTG TGCATCCAGCCTGGGCTCCTCCACTTCAGCCAGCTTCACTG < 41bp 1 0.125186377999104 1 0.116620928049088 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WWC1 ENSG00000113645 CDS Human protein_coding chr5:167850633 chr5:167850627 nonsynonymous SNV 0.966 1 15 hm5C_associated_SNPs_27514 0 0 0 0 1 WWC1 chr5:167850538 3'AG 167850538 Downstream 90bp
chr5 167850626 167850626 1 + G T LUAD 167850633 + 167850613 167850653 41 TGCATCCAGCCTGGACTCCTCCACTTCAGCCAGCTTCACTG TGCATCCAGCCTGTACTCCTCCACTTCAGCCAGCTTCACTG < 41bp 1 0.104536205320545 1 0.0760217010974884 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WWC1 ENSG00000113645 CDS Human protein_coding chr5:167850633 chr5:167850626 nonsynonymous SNV 0.965 4 14 hm5C_associated_SNPs_27515 0 0 0 0 1 WWC1 chr5:167850538 3'AG 167850538 Downstream 89bp
chr10 112335124 112335124 1 + G T LUAD 112335144 + 112335124 112335164 41 GTCATCTTCGTCCAGAACAGCGGTTGGCTTTATTGCATGTG TTCATCTTCGTCCAGAACAGCGGTTGGCTTTATTGCATGTG < 41bp 1 0.202714663793782 1 0.110780656337738 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMC3 ENSG00000108055 CDS Human protein_coding chr10:112335144 chr10:112335124 nonsynonymous SNV 0.998 4 1 hm5C_associated_SNPs_27516 0 0 1 0 2 SMC3 chr10:112335094 3'AG 112335094 Downstream 31bp
chr10 112335124 112335124 1 + G T LUAD 112335144 + 112335124 112335164 41 GTCATCTTCGTCCAGAACAGCGGTTGGCTTTATTGCATGTG TTCATCTTCGTCCAGAACAGCGGTTGGCTTTATTGCATGTG < 41bp 1 0.202714663793782 1 0.110780656337738 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMC3 ENSG00000108055 CDS Human protein_coding chr10:112335144 chr10:112335124 nonsynonymous SNV 0.998 4 1 hm5C_associated_SNPs_27516 0 0 1 0 2 SMC3 chr10:112335161 5'GT 112335161 Upstream 38bp
chr19 11114068 11114068 1 + G T LUAD 11114055 + 11114035 11114075 41 TCTGATAGTGAAGAAAGTGGCTCAGAAGAAGAGGAAGAGGT TCTGATAGTGAAGAAAGTGGCTCAGAAGAAGAGTAAGAGGT < 41bp 1 0.238625755620532 1 0.212884306907654 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114055 chr19:11114068 stopgain 1.000 1 34 hm5C_associated_SNPs_27517 0 0 1 0 2 SMARCA4 chr19:11114016 3'AG 11114016 Downstream 53bp
chr19 11114068 11114068 1 + G T LUAD 11114055 + 11114035 11114075 41 TCTGATAGTGAAGAAAGTGGCTCAGAAGAAGAGGAAGAGGT TCTGATAGTGAAGAAAGTGGCTCAGAAGAAGAGTAAGAGGT < 41bp 1 0.238625755620532 1 0.212884306907654 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114055 chr19:11114068 stopgain 1.000 1 34 hm5C_associated_SNPs_27517 0 0 1 0 2 SMARCA4 chr19:11114073 5'GT 11114073 Upstream 6bp
chr19 11114068 11114068 1 + G T LUAD 11114057 + 11114037 11114077 41 TGATAGTGAAGAAAGTGGCTCAGAAGAAGAGGAAGAGGTAA TGATAGTGAAGAAAGTGGCTCAGAAGAAGAGTAAGAGGTAA < 41bp 1 0.361307605522724 1 0.455998301506042 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114057 chr19:11114068 stopgain 1.000 1 32 hm5C_associated_SNPs_27518 0 0 1 0 2 SMARCA4 chr19:11114016 3'AG 11114016 Downstream 53bp
chr19 11114068 11114068 1 + G T LUAD 11114057 + 11114037 11114077 41 TGATAGTGAAGAAAGTGGCTCAGAAGAAGAGGAAGAGGTAA TGATAGTGAAGAAAGTGGCTCAGAAGAAGAGTAAGAGGTAA < 41bp 1 0.361307605522724 1 0.455998301506042 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114057 chr19:11114068 stopgain 1.000 1 32 hm5C_associated_SNPs_27518 0 0 1 0 2 SMARCA4 chr19:11114073 5'GT 11114073 Upstream 6bp
chr7 142458448 142458448 1 + A G LUAD 142458431 + 142458411 142458451 41 GCCCCCTTTGATGATGATGACAAGATCGTTGGGGGCTACAA GCCCCCTTTGATGATGATGACAAGATCGTTGGGGGCTGCAA < 41bp 1 0.711887669069802 1 0.491522043943405 experiment 0.576224661860395 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458431 chr7:142458448 nonsynonymous SNV 0.048 4 38 hm5C_associated_SNPs_27519 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 43bp
chr7 142458448 142458448 1 + A G LUAD 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATGACAAGATCGTTGGGGGCTGCAACTGTGA < 41bp 1 0.22350161775354 1 0.142895013093948 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458448 nonsynonymous SNV 0.048 4 32 hm5C_associated_SNPs_27520 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 43bp
chr7 142458448 142458448 1 + A G LUAD 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGTTGGGGGCTGCAACTGTGAGGAGAATTC < 41bp 1 0.481274891953426 1 0.502833604812622 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458448 nonsynonymous SNV 0.048 4 23 hm5C_associated_SNPs_27521 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 43bp
chr7 142458448 142458448 1 + A G LUAD 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGTTGGGGGCTGCAACTGTGAGGAGAATTCTGT < 41bp 1 0.160965221833427 1 0.165374040603638 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458448 nonsynonymous SNV 0.048 4 20 hm5C_associated_SNPs_27522 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 43bp
chr7 142458448 142458448 1 + A G LUAD 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGCTGCAACTGTGAGGAGAATTCTGTCCC < 41bp 1 0.387751448009166 1 0.387707859277725 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458448 nonsynonymous SNV 0.048 4 17 hm5C_associated_SNPs_27523 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 43bp
chr7 142458448 142458448 1 + A G LUAD 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTGCAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC < 41bp 1 0.161556946126062 1 0.169284611940384 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458448 nonsynonymous SNV 0.048 4 3 hm5C_associated_SNPs_27524 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 43bp
chr19 50912800 50912800 1 + G A LUAD 50912807 + 50912787 50912827 41 AGCTGGCCAAGGAGACAGACCCCCTCCGGCGCCAGGTCCTG AGCTGGCCAAGGAAACAGACCCCCTCCGGCGCCAGGTCCTG < 41bp 1 0.138538534259625 1 0.0105753839015961 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912807 chr19:50912800 synonymous SNV . 0 14 hm5C_associated_SNPs_27526 0 0 1 0 1 POLD1 chr19:50912776 3'AG 50912776 Downstream 25bp
chr19 50912800 50912800 1 + G A LUAD 50912813 + 50912793 50912833 41 CCAAGGAGACAGACCCCCTCCGGCGCCAGGTCCTGGATGGA CCAAGGAAACAGACCCCCTCCGGCGCCAGGTCCTGGATGGA < 41bp 1 0.449308751268877 1 0.721050083637238 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912813 chr19:50912800 synonymous SNV . 0 8 hm5C_associated_SNPs_27527 0 0 1 0 1 POLD1 chr19:50912776 3'AG 50912776 Downstream 25bp
chr10 75557788 75557788 1 + G T LUAD 75557805 + 75557785 75557825 41 CTGGCTCTCACGTACTTATTCTTCCCACGTTTCCTGGATTA CTGTCTCTCACGTACTTATTCTTCCCACGTTTCCTGGATTA < 41bp 1 0.107737415280073 1 0.186539143323898 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75557805 chr10:75557788 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_27528 0 0 1 0 2 ZSWIM8 chr10:75557694 3'AG 75557694 Downstream 95bp
chr10 75557788 75557788 1 + G T LUAD 75557805 + 75557785 75557825 41 CTGGCTCTCACGTACTTATTCTTCCCACGTTTCCTGGATTA CTGTCTCTCACGTACTTATTCTTCCCACGTTTCCTGGATTA < 41bp 1 0.107737415280073 1 0.186539143323898 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75557805 chr10:75557788 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_27528 0 0 1 0 2 ZSWIM8 chr10:75557828 5'GT 75557828 Upstream 41bp
chr12 57569701 57569701 1 + A G LUAD 57569717 + 57569697 57569737 41 TTCAAGCCGTTCATCATTTTCTCCAACCGCCATGAAATCCG TTCAGGCCGTTCATCATTTTCTCCAACCGCCATGAAATCCG < 41bp 1 0.38643184351111 1 0.97370857000351 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57569717 chr12:57569701 nonsynonymous SNV 0.999 2 5 hm5C_associated_SNPs_27529 0 0 0 0 1 LRP1 chr12:57569692 3'AG 57569692 Downstream 10bp
chrX 69639590 69639590 1 + G A LUAD 69639607 + 69639587 69639627 41 CAGGATTGAGCTTCTTTAATCCCGTCTGTGCCACCCCCAAT CAGAATTGAGCTTCTTTAATCCCGTCTGTGCCACCCCCAAT < 41bp 1 0.382302708892157 1 0.18930447101593 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639607 chrX:69639590 nonsynonymous SNV 0.991 2 4 hm5C_associated_SNPs_27530 0 0 0 0 2 KIF4A chrX:69639511 3'AG 69639511 Downstream 80bp
chrX 69639590 69639590 1 + G A LUAD 69639607 + 69639587 69639627 41 CAGGATTGAGCTTCTTTAATCCCGTCTGTGCCACCCCCAAT CAGAATTGAGCTTCTTTAATCCCGTCTGTGCCACCCCCAAT < 41bp 1 0.382302708892157 1 0.18930447101593 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639607 chrX:69639590 nonsynonymous SNV 0.991 2 4 hm5C_associated_SNPs_27530 0 0 0 0 2 KIF4A chrX:69639633 5'GT 69639633 Upstream 44bp
chr14 93277914 93277914 1 + C T LUAD 93277898 + 93277878 93277918 41 TATAAAAATTTGTCACAGAGCGAGTTTGCTGCACGCCTTAA TATAAAAATTTGTCACAGAGCGAGTTTGCTGCACGCTTTAA < 41bp 1 0.510689155163437 1 0.180566161870956 experiment 0.978621689673127 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93277898 chr14:93277914 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_27531 0 0 0 0 1 GOLGA5 chr14:93277896 3'AG 93277896 Downstream 19bp
chr13 41650184 41650184 1 + C T LUAD 41650198 + 41650178 41650218 41 AGAATCCAGATGGGAGAAACCTGATGATTTCATTCCACACA AGAATCTAGATGGGAGAAACCTGATGATTTCATTCCACACA < 41bp 1 0.63140879321281 1 0.0783772766590118 experiment 0.737182413574379 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WBP4 ENSG00000120688 CDS Human protein_coding chr13:41650198 chr13:41650184 synonymous SNV . 0 7 hm5C_associated_SNPs_27532 0 0 0 0 1 WBP4 chr13:41650180 3'AG 41650180 Downstream 5bp
chr7 66773927 66773927 1 + G C LUAD 66773926 + 66773906 66773946 41 ATACATCCTTTTGTAGGACTCGGGGGACTATCCTCTGACAG ATACATCCTTTTGTAGGACTCCGGGGACTATCCTCTGACAG < 41bp 1 0.680213185514792 1 0.905108094215393 experiment 0.639573628970416 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control STAG3L4 ENSG00000106610 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:66773926 chr7:66773927 . . 0 22 hm5C_associated_SNPs_27533 0 0 1 0 1 STAG3L4 chr7:66773922 3'AG 66773922 Downstream 6bp
chr1 162745481 162745481 1 + C A LUAD 162745469 + 162745449 162745489 41 TTTCTTAAGGAGATAAAGATCATGTCTCGGCTCAAGGACCC TTTCTTAAGGAGATAAAGATCATGTCTCGGCTAAAGGACCC < 41bp 1 0.251606257576567 1 0.111975371837616 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162745469 chr1:162745481 synonymous SNV . 0 33 hm5C_associated_SNPs_27534 0 0 1 0 1 DDR2 chr1:162745442 3'AG 162745442 Downstream 40bp
chr19 55817713 55817713 1 + C T LUAD 55817715 + 55817695 55817735 41 GTCTTCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTC GTCTTCCAAAAGCCCGTCTGCTTCCAGGTGGACATCAGCTC < 41bp 1 0.116275690604295 1 0.133496940135956 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55817715 chr19:55817713 nonsynonymous SNV 0.992 3 19 hm5C_associated_SNPs_27535 0 0 1 0 1 BRSK1 chr19:55817620 3'AG 55817620 Downstream 94bp
chr19 55817713 55817713 1 + C T LUAD 55817719 + 55817699 55817739 41 TCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTCCTCT TCCAAAAGCCCGTCTGCTTCCAGGTGGACATCAGCTCCTCT < 41bp 1 0.749006506378655 1 0.95224130153656 experiment 0.501986987242689 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55817719 chr19:55817713 nonsynonymous SNV 0.992 3 15 hm5C_associated_SNPs_27536 0 0 1 0 1 BRSK1 chr19:55817620 3'AG 55817620 Downstream 94bp
chr19 36227603 36227603 1 + G T LUAD 36227620 + 36227600 36227640 41 CGAGCTCTGAGGAAGAGCCTCCATCCCCAGATGATAAAGAG CGATCTCTGAGGAAGAGCCTCCATCCCCAGATGATAAAGAG < 41bp 1 0.00779612260214917 1 0.13691446185112 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36227620 chr19:36227603 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_27537 0 0 1 0 1 KMT2B chr19:36227591 3'AG 36227591 Downstream 13bp
chr19 47763903 47763903 1 + G T LUAD 47763890 + 47763870 47763910 41 GGTCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGG GGTCTCCTGGGACCCCTCGGCCCCCAGGGGCCATCAAGGGG < 41bp 1 0.204971691634992 1 0.229881227016449 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763890 chr19:47763903 nonsynonymous SNV 0.994 1 34 hm5C_associated_SNPs_27538 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 59bp
chr19 47763903 47763903 1 + G T LUAD 47763891 + 47763871 47763911 41 GTCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGG GTCTCCTGGGACCCCTCGGCCCCCAGGGGCCATCAAGGGGG < 41bp 1 0.704324869177112 1 0.391156882047653 experiment 0.591350261645776 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763891 chr19:47763903 nonsynonymous SNV 0.994 1 33 hm5C_associated_SNPs_27539 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 59bp
chr19 47763903 47763903 1 + G T LUAD 47763892 + 47763872 47763912 41 TCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGGG TCTCCTGGGACCCCTCGGCCCCCAGGGGCCATCAAGGGGGG < 41bp 1 0.384829310478233 1 0.385050773620605 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763892 chr19:47763903 nonsynonymous SNV 0.994 1 32 hm5C_associated_SNPs_27540 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 59bp
chr19 47763903 47763903 1 + G T LUAD 47763893 + 47763873 47763913 41 CTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGGGC CTCCTGGGACCCCTCGGCCCCCAGGGGCCATCAAGGGGGGC < 41bp 1 0.513461809141665 1 0.698006331920624 experiment 0.97307638171667 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763893 chr19:47763903 nonsynonymous SNV 0.994 1 31 hm5C_associated_SNPs_27541 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 59bp
chr19 47763903 47763903 1 + G T LUAD 47763913 + 47763893 47763933 41 CCAGGGGCCAGCAAGGGGGGCCGGACTCCTCCACAGCAGGG CCAGGGGCCATCAAGGGGGGCCGGACTCCTCCACAGCAGGG < 41bp 1 0.471739050377071 1 0.42859473824501 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763913 chr19:47763903 nonsynonymous SNV 0.994 1 11 hm5C_associated_SNPs_27542 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 59bp
chr7 44801092 44801092 1 + G T LUAD 44801091 + 44801071 44801111 41 CGGCTGACCTTCCCTGTGCGCGATGGGGTGGTCCTGGAGCC CGGCTGACCTTCCCTGTGCGCTATGGGGTGGTCCTGGAGCC < 41bp 1 0.30323089433131 1 0.384092807769775 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44801091 chr7:44801092 nonsynonymous SNV 0.960 4 22 hm5C_associated_SNPs_27545 0 0 1 0 1 ZMIZ2 chr7:44801048 3'AG 44801048 Downstream 45bp
chr19 8321907 8321907 1 + G A LUAD 8321902 + 8321882 8321922 41 CCTTCTCCTACAGTGCCAACCTGCTGCGCATTGGCTCTCTG CCTTCTCCTACAGTGCCAACCTGCTACGCATTGGCTCTCTG < 41bp 1 0.392665346043536 1 0.309657394886017 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS4 ENSG00000090661 CDS Human protein_coding chr19:8321902 chr19:8321907 synonymous SNV . 0 26 hm5C_associated_SNPs_27546 0 0 0 0 2 CERS4 chr19:8321833 3'AG 8321833 Downstream 75bp
chr19 8321907 8321907 1 + G A LUAD 8321902 + 8321882 8321922 41 CCTTCTCCTACAGTGCCAACCTGCTGCGCATTGGCTCTCTG CCTTCTCCTACAGTGCCAACCTGCTACGCATTGGCTCTCTG < 41bp 1 0.392665346043536 1 0.309657394886017 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS4 ENSG00000090661 CDS Human protein_coding chr19:8321902 chr19:8321907 synonymous SNV . 0 26 hm5C_associated_SNPs_27546 0 0 0 0 2 CERS4 chr19:8321961 5'GT 8321961 Upstream 55bp
chr7 142459794 142459794 1 + T A LUAD 142459774 + 142459754 142459794 41 AATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGCGTGT AATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGCGTGA < 41bp 1 0.733680840444344 1 0.0872285068035126 experiment 0.532638319111312 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459774 chr7:142459794 nonsynonymous SNV 0.004 1 41 hm5C_associated_SNPs_27548 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 85bp
chr7 142459794 142459794 1 + T A LUAD 142459781 + 142459761 142459801 41 CTCTCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCAT CTCTCCTCACGTGCAGTAATCAACGCCCGCGTGACCACCAT < 41bp 1 0.67071865915264 1 0.864444494247437 experiment 0.658562681694721 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459781 chr7:142459794 nonsynonymous SNV 0.004 1 34 hm5C_associated_SNPs_27549 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 85bp
chr7 142459794 142459794 1 + T A LUAD 142459784 + 142459764 142459804 41 TCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTC TCCTCACGTGCAGTAATCAACGCCCGCGTGACCACCATCTC < 41bp 1 0.672993872243951 1 0.337846755981445 experiment 0.654012255512097 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459784 chr7:142459794 nonsynonymous SNV 0.004 1 31 hm5C_associated_SNPs_27550 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 85bp
chr7 142459794 142459794 1 + T A LUAD 142459786 + 142459766 142459806 41 CTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTC CTCACGTGCAGTAATCAACGCCCGCGTGACCACCATCTCTC < 41bp 1 0.506062015885189 1 0.12872126698494 experiment 0.987875968229622 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459786 chr7:142459794 nonsynonymous SNV 0.004 1 29 hm5C_associated_SNPs_27551 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 85bp
chr7 142459794 142459794 1 + T A LUAD 142459787 + 142459767 142459807 41 TCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCT TCACGTGCAGTAATCAACGCCCGCGTGACCACCATCTCTCT < 41bp 1 0.548591282723148 1 0.254048824310303 experiment 0.902817434553703 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459787 chr7:142459794 nonsynonymous SNV 0.004 1 28 hm5C_associated_SNPs_27552 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 85bp
chr7 142459794 142459794 1 + T A LUAD 142459788 + 142459768 142459808 41 CACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCTG CACGTGCAGTAATCAACGCCCGCGTGACCACCATCTCTCTG < 41bp 1 0.736200543621631 1 0.15639790892601 experiment 0.527598912756739 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459788 chr7:142459794 nonsynonymous SNV 0.004 1 27 hm5C_associated_SNPs_27553 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 85bp
chr7 142459794 142459794 1 + T A LUAD 142459790 + 142459770 142459810 41 CGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCC CGTGCAGTAATCAACGCCCGCGTGACCACCATCTCTCTGCC < 41bp 1 0.708657562042302 1 0.373873621225357 experiment 0.582684875915396 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459790 chr7:142459794 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_27554 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 85bp
chr7 142459794 142459794 1 + T A LUAD 142459795 + 142459775 142459815 41 AGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCG AGTAATCAACGCCCGCGTGACCACCATCTCTCTGCCCACCG < 41bp 1 0.328448018231018 1 0.091395229101181 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459795 chr7:142459794 nonsynonymous SNV 0.004 1 20 hm5C_associated_SNPs_27555 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 85bp
chr7 142459794 142459794 1 + T A LUAD 142459798 + 142459778 142459818 41 AATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCC AATCAACGCCCGCGTGACCACCATCTCTCTGCCCACCGCCC < 41bp 1 0.184945071848268 1 0.0541442334651947 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459798 chr7:142459794 nonsynonymous SNV 0.004 1 17 hm5C_associated_SNPs_27556 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 85bp
chr7 142459794 142459794 1 + T A LUAD 142459799 + 142459779 142459819 41 ATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCC ATCAACGCCCGCGTGACCACCATCTCTCTGCCCACCGCCCC < 41bp 1 0.427115449189763 1 0.344746172428131 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459799 chr7:142459794 nonsynonymous SNV 0.004 1 16 hm5C_associated_SNPs_27557 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 85bp
chr7 142459794 142459794 1 + T A LUAD 142459802 + 142459782 142459822 41 AACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCC AACGCCCGCGTGACCACCATCTCTCTGCCCACCGCCCCTCC < 41bp 1 0.448944146941247 1 0.523673415184021 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459802 chr7:142459794 nonsynonymous SNV 0.004 1 13 hm5C_associated_SNPs_27558 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 85bp
chr7 142459794 142459794 1 + T A LUAD 142459804 + 142459784 142459824 41 CGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAG CGCCCGCGTGACCACCATCTCTCTGCCCACCGCCCCTCCAG < 41bp 1 0.684175750452794 1 0.527535200119019 experiment 0.631648499094412 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459804 chr7:142459794 nonsynonymous SNV 0.004 1 11 hm5C_associated_SNPs_27559 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 85bp
chr7 142459794 142459794 1 + T A LUAD 142459806 + 142459786 142459826 41 CCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCC CCCGCGTGACCACCATCTCTCTGCCCACCGCCCCTCCAGCC < 41bp 1 0.610350815553031 1 0.589830040931702 experiment 0.779298368893938 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459806 chr7:142459794 nonsynonymous SNV 0.004 1 9 hm5C_associated_SNPs_27560 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 85bp
chr7 142459794 142459794 1 + T A LUAD 142459809 + 142459789 142459829 41 GCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACT GCGTGACCACCATCTCTCTGCCCACCGCCCCTCCAGCCACT < 41bp 1 0.173754682788446 1 0.0375349223613739 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459809 chr7:142459794 nonsynonymous SNV 0.004 1 6 hm5C_associated_SNPs_27561 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 85bp
chr7 142459794 142459794 1 + T A LUAD 142459810 + 142459790 142459830 41 CGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTG CGTGACCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTG < 41bp 1 0.220790983799998 1 0.0482375919818878 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459810 chr7:142459794 nonsynonymous SNV 0.004 1 5 hm5C_associated_SNPs_27562 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 85bp
chr7 142459794 142459794 1 + T A LUAD 142459811 + 142459791 142459831 41 GTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGG GTGACCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGG < 41bp 1 0.679103812099875 1 0.0437188744544983 experiment 0.64179237580025 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459811 chr7:142459794 nonsynonymous SNV 0.004 1 4 hm5C_associated_SNPs_27563 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 85bp
chr7 142459794 142459794 1 + T A LUAD 142459813 + 142459793 142459833 41 GTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCA GACCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCA < 41bp 1 0.274242263659063 1 0.133302837610245 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459813 chr7:142459794 nonsynonymous SNV 0.004 1 2 hm5C_associated_SNPs_27564 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 85bp
chr7 142459794 142459794 1 + T A LUAD 142459814 + 142459794 142459834 41 TCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCAC ACCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCAC < 41bp 1 0.526026416675829 1 0.141821354627609 experiment 0.947947166648342 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459814 chr7:142459794 nonsynonymous SNV 0.004 1 1 hm5C_associated_SNPs_27565 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 85bp
chr1 222833533 222833533 1 + A T LUAD 222833549 + 222833529 222833569 41 CCAGAATGGCTCTTTTGGCCCATCCCCTGTGAGTGGTGGAG CCAGTATGGCTCTTTTGGCCCATCCCCTGTGAGTGGTGGAG < 41bp 1 0.084746260768132 1 0.0762242674827576 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MIA3 ENSG00000154305 CDS Human protein_coding chr1:222833549 chr1:222833533 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_27566 0 0 1 0 1 MIA3 chr1:222833519 3'AG 222833519 Downstream 15bp
chr7 142459714 142459714 1 + C G LUAD 142459696 + 142459676 142459716 41 TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCGCC < 41bp 1 0.339704423601011 1 0.323773682117462 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459696 chr7:142459714 nonsynonymous SNV 0.015 5 39 hm5C_associated_SNPs_27569 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 90bp
chr7 142459714 142459714 1 + C G LUAD 142459703 + 142459683 142459723 41 TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGA TTCATCAATGCAGCCAAGATCATCCGCCACCGCCAATACGA < 41bp 1 0.331445340450307 1 0.068085104227066 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459703 chr7:142459714 nonsynonymous SNV 0.015 5 32 hm5C_associated_SNPs_27570 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 90bp
chr7 142459714 142459714 1 + C G LUAD 142459706 + 142459686 142459726 41 ATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAG ATCAATGCAGCCAAGATCATCCGCCACCGCCAATACGACAG < 41bp 1 0.300221512936103 1 0.389840543270111 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459706 chr7:142459714 nonsynonymous SNV 0.015 5 29 hm5C_associated_SNPs_27571 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 90bp
chr7 142459714 142459714 1 + C G LUAD 142459707 + 142459687 142459727 41 TCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGG TCAATGCAGCCAAGATCATCCGCCACCGCCAATACGACAGG < 41bp 1 0.790402494216877 1 0.494733154773712 experiment 0.419195011566246 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459707 chr7:142459714 nonsynonymous SNV 0.015 5 28 hm5C_associated_SNPs_27572 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 90bp
chr7 142459714 142459714 1 + C G LUAD 142459709 + 142459689 142459729 41 AATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA AATGCAGCCAAGATCATCCGCCACCGCCAATACGACAGGAA < 41bp 1 0.151577986212442 1 0.104823619127274 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459709 chr7:142459714 nonsynonymous SNV 0.015 5 26 hm5C_associated_SNPs_27573 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 90bp
chr7 142459714 142459714 1 + C G LUAD 142459710 + 142459690 142459730 41 ATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG ATGCAGCCAAGATCATCCGCCACCGCCAATACGACAGGAAG < 41bp 1 0.390499284911803 1 0.18408465385437 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459710 chr7:142459714 nonsynonymous SNV 0.015 5 25 hm5C_associated_SNPs_27574 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 90bp
chr7 142459714 142459714 1 + C G LUAD 142459712 + 142459692 142459732 41 GCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC GCAGCCAAGATCATCCGCCACCGCCAATACGACAGGAAGAC < 41bp 1 0.174785847574192 1 0.251794248819351 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459712 chr7:142459714 nonsynonymous SNV 0.015 5 23 hm5C_associated_SNPs_27575 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 90bp
chr7 142459714 142459714 1 + C G LUAD 142459713 + 142459693 142459733 41 CAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT CAGCCAAGATCATCCGCCACCGCCAATACGACAGGAAGACT < 41bp 1 0.740063592270526 1 0.821253418922424 experiment 0.519872815458948 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459713 chr7:142459714 nonsynonymous SNV 0.015 5 22 hm5C_associated_SNPs_27576 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 90bp
chr7 142459714 142459714 1 + C G LUAD 142459715 + 142459695 142459735 41 GCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCT GCCAAGATCATCCGCCACCGCCAATACGACAGGAAGACTCT < 41bp 1 0.245841679518421 1 0.204381227493286 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459715 chr7:142459714 nonsynonymous SNV 0.015 5 20 hm5C_associated_SNPs_27577 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 90bp
chr7 142459714 142459714 1 + C G LUAD 142459716 + 142459696 142459736 41 CCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCTG CCAAGATCATCCGCCACCGCCAATACGACAGGAAGACTCTG < 41bp 1 0.425420956804774 1 0.102918386459351 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459716 chr7:142459714 nonsynonymous SNV 0.015 5 19 hm5C_associated_SNPs_27578 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 90bp
chr7 142459714 142459714 1 + C G LUAD 142459732 + 142459712 142459752 41 CCCCCAATACGACAGGAAGACTCTGAACAATGACATCATGT CCGCCAATACGACAGGAAGACTCTGAACAATGACATCATGT < 41bp 1 0.518538485386688 1 0.170661956071854 experiment 0.962923029226623 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459732 chr7:142459714 nonsynonymous SNV 0.015 5 3 hm5C_associated_SNPs_27579 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 90bp
chr9 101765843 101765843 1 + G A LUAD 101765832 + 101765812 101765852 41 CACCGGGGGACCAACCCTCTCTATGTCCACGGAGAACCCAG CACCGGGGGACCAACCCTCTCTATGTCCACGAAGAACCCAG < 41bp 1 0.303144626685665 1 0.120808005332947 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765832 chr9:101765843 nonsynonymous SNV 0.000 1 32 hm5C_associated_SNPs_27582 0 0 0 0 1 COL15A1 chr9:101765869 5'GT 101765869 Upstream 27bp
chr5 139892992 139892992 1 + G T LUAD 139893005 + 139892985 139893025 41 TTGTGAAGGCTAAAGACCAGCAAGCTGCAGAAGCAAATAAG TTGTGAATGCTAAAGACCAGCAAGCTGCAGAAGCAAATAAG < 41bp 1 0.160107811174976 1 0.44102668762207 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139893005 chr5:139892992 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_27588 0 0 1 0 2 ANKHD1;ANKHD1-EIF4EBP3 chr5:139892948 3'AG 139892948 Downstream 45bp
chr5 139892992 139892992 1 + G T LUAD 139893005 + 139892985 139893025 41 TTGTGAAGGCTAAAGACCAGCAAGCTGCAGAAGCAAATAAG TTGTGAATGCTAAAGACCAGCAAGCTGCAGAAGCAAATAAG < 41bp 1 0.160107811174976 1 0.44102668762207 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139893005 chr5:139892992 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_27588 0 0 1 0 2 ANKHD1;ANKHD1-EIF4EBP3 chr5:139893064 5'GT 139893064 Upstream 73bp
chr22 39125579 39125579 1 + G T LUAD 39125568 + 39125548 39125588 41 ACGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGT ACGAAACGAGACGAGGGGGGCCCGTCTGGTGTGCCAGCAGT < 41bp 1 0.147314324841759 1 0.174940228462219 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125568 chr22:39125579 nonsynonymous SNV 0.093 0 32 hm5C_associated_SNPs_27589 0 0 1 0 1 GTPBP1 chr22:39125667 5'GT 39125667 Upstream 89bp
chr22 39125579 39125579 1 + G T LUAD 39125569 + 39125549 39125589 41 CGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTA CGAAACGAGACGAGGGGGGCCCGTCTGGTGTGCCAGCAGTA < 41bp 1 0.0340595695009849 1 0.317718088626862 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125569 chr22:39125579 nonsynonymous SNV 0.093 0 31 hm5C_associated_SNPs_27590 0 0 1 0 1 GTPBP1 chr22:39125667 5'GT 39125667 Upstream 89bp
chr22 39125579 39125579 1 + G T LUAD 39125570 + 39125550 39125590 41 GAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTAG GAAACGAGACGAGGGGGGCCCGTCTGGTGTGCCAGCAGTAG < 41bp 1 0.148049134521817 1 0.265359729528427 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125570 chr22:39125579 nonsynonymous SNV 0.093 0 30 hm5C_associated_SNPs_27591 0 0 1 0 1 GTPBP1 chr22:39125667 5'GT 39125667 Upstream 89bp
chr7 98528436 98528436 1 + A G LUAD 98528424 + 98528404 98528444 41 AGACATTCCTGAAAGCACTTCTCTTTGTCATGATGGACTTA AGACATTCCTGAAAGCACTTCTCTTTGTCATGGTGGACTTA < 41bp 1 0.0509407775892549 1 0.0771685540676117 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98528424 chr7:98528436 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_27592 0 0 1 0 1 TRRAP chr7:98528453 5'GT 98528453 Upstream 18bp
chr7 98528436 98528436 1 + A G LUAD 98528441 + 98528421 98528461 41 CTTCTCTTTGTCATGATGGACTTAACTGGAGAGGTAGGTGA CTTCTCTTTGTCATGGTGGACTTAACTGGAGAGGTAGGTGA < 41bp 1 0.116977729188214 1 0.110246509313583 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98528441 chr7:98528436 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_27593 0 0 1 0 1 TRRAP chr7:98528453 5'GT 98528453 Upstream 18bp
chrX 148628335 148628335 1 + G T LUAD 148628325 + 148628305 148628345 41 ACTTTGCAATGCCCCGAAGACTTAACTCCCGATGAGGTTGT ACTTTGCAATGCCCCGAAGACTTAACTCCCTATGAGGTTGT < 41bp 1 0.349840642717895 1 0.126442968845367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CXorf40A ENSG00000197620 CDS Human protein_coding chrX:148628325 chrX:148628335 nonsynonymous SNV 0.001 1 31 hm5C_associated_SNPs_27594 0 0 0 0 1 CXorf40A chrX:148628285 3'AG 148628285 Downstream 51bp
chr7 55259439 55259439 1 + T G LUAD 55259432 + 55259412 55259452 41 GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGA GGCATGAACTACTTGGAGGACCGTCGCGTGGTGCACCGCGA < 41bp 1 0.0849398682395569 1 0.273907214403152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55259432 chr7:55259439 nonsynonymous SNV 0.998 2 28 hm5C_associated_SNPs_27600 1 0 1 0 1 EGFR chr7:55259412 3'AG 55259412 Downstream 28bp
chr22 46681155 46681155 1 + G C LUAD 46681140 + 46681120 46681160 41 AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCGCTGAC AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCCCTGAC < 41bp 1 0.123035471625612 1 0.360322624444962 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC38 ENSG00000075234 CDS Human protein_coding chr22:46681140 chr22:46681155 synonymous SNV . 0 36 hm5C_associated_SNPs_27601 0 0 1 0 2 TTC38 chr22:46681138 3'AG 46681138 Downstream 18bp
chr22 46681155 46681155 1 + G C LUAD 46681140 + 46681120 46681160 41 AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCGCTGAC AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCCCTGAC < 41bp 1 0.123035471625612 1 0.360322624444962 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC38 ENSG00000075234 CDS Human protein_coding chr22:46681140 chr22:46681155 synonymous SNV . 0 36 hm5C_associated_SNPs_27601 0 0 1 0 2 TTC38 chr22:46681176 5'GT 46681176 Upstream 22bp
chr16 30975431 30975431 1 + G T LUAD 30975417 + 30975397 30975437 41 CCTGCTCTGTCGCTCTAGGCCGAATCCCGCCGCCGCTCTTC CCTGCTCTGTCGCTCTAGGCCGAATCCCGCCGCCTCTCTTC < 41bp 1 0.230003107606393 1 0.258467882871628 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30975417 chr16:30975431 nonsynonymous SNV 0.995 3 35 hm5C_associated_SNPs_27602 0 0 1 0 1 SETD1A chr16:30975415 3'AG 30975415 Downstream 17bp
chr10 118306841 118306841 1 + A T LUAD 118306831 + 118306811 118306851 41 GAAGTTTGCTACGAAAGACTCGGCTGCTTCAGTGATGACTC GAAGTTTGCTACGAAAGACTCGGCTGCTTCTGTGATGACTC < 41bp 1 0.633569257793254 1 0.278895437717438 experiment 0.732861484413492 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306831 chr10:118306841 nonsynonymous SNV 0.979 4 31 hm5C_associated_SNPs_27603 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 36bp
chr10 118306841 118306841 1 + A T LUAD 118306849 + 118306829 118306869 41 CTCGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTAC CTCGGCTGCTTCTGTGATGACTCCCCATGGTCAGGAATTAC < 41bp 1 0.325793388152732 1 0.0270360708236694 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306849 chr10:118306841 nonsynonymous SNV 0.979 4 13 hm5C_associated_SNPs_27604 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 36bp
chr10 118306841 118306841 1 + A T LUAD 118306851 + 118306831 118306871 41 CGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGG CGGCTGCTTCTGTGATGACTCCCCATGGTCAGGAATTACGG < 41bp 1 0.703133378347095 1 0.314902365207672 experiment 0.59373324330581 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306851 chr10:118306841 nonsynonymous SNV 0.979 4 11 hm5C_associated_SNPs_27605 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 36bp
chr10 118306841 118306841 1 + A T LUAD 118306853 + 118306833 118306873 41 GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAA GCTGCTTCTGTGATGACTCCCCATGGTCAGGAATTACGGAA < 41bp 1 0.285007419252101 1 0.221290439367294 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306853 chr10:118306841 nonsynonymous SNV 0.979 4 9 hm5C_associated_SNPs_27606 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 36bp
chr10 118306841 118306841 1 + A T LUAD 118306854 + 118306834 118306874 41 CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAAA CTGCTTCTGTGATGACTCCCCATGGTCAGGAATTACGGAAA < 41bp 1 0.565527869378725 1 0.599889874458313 experiment 0.868944261242551 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306854 chr10:118306841 nonsynonymous SNV 0.979 4 8 hm5C_associated_SNPs_27607 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 36bp
chrX 107821200 107821200 1 + G T LUAD 107821198 + 107821178 107821218 41 TTAGGGCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGG TTAGGGCCCTCCTGGTCCACCATGACTTCCAGGACCTAAGG < 41bp 1 0.201758804682339 1 0.0787173211574554 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107821198 chrX:107821200 stopgain 1.000 1 23 hm5C_associated_SNPs_27608 0 0 1 0 2 COL4A5 chrX:107821182 3'AG 107821182 Downstream 19bp
chrX 107821200 107821200 1 + G T LUAD 107821198 + 107821178 107821218 41 TTAGGGCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGG TTAGGGCCCTCCTGGTCCACCATGACTTCCAGGACCTAAGG < 41bp 1 0.201758804682339 1 0.0787173211574554 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107821198 chrX:107821200 stopgain 1.000 1 23 hm5C_associated_SNPs_27608 0 0 1 0 2 COL4A5 chrX:107821217 5'GT 107821217 Upstream 18bp
chrX 107821200 107821200 1 + G T LUAD 107821203 + 107821183 107821223 41 GCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGGTAATT GCCCTCCTGGTCCACCATGACTTCCAGGACCTAAGGTAATT < 41bp 1 0.0492151931827726 1 0.0621078014373779 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107821203 chrX:107821200 stopgain 1.000 1 18 hm5C_associated_SNPs_27609 0 0 1 0 2 COL4A5 chrX:107821182 3'AG 107821182 Downstream 19bp
chrX 107821200 107821200 1 + G T LUAD 107821203 + 107821183 107821223 41 GCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGGTAATT GCCCTCCTGGTCCACCATGACTTCCAGGACCTAAGGTAATT < 41bp 1 0.0492151931827726 1 0.0621078014373779 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107821203 chrX:107821200 stopgain 1.000 1 18 hm5C_associated_SNPs_27609 0 0 1 0 2 COL4A5 chrX:107821217 5'GT 107821217 Upstream 18bp
chr11 43908168 43908168 1 + G T LUAD 43908156 + 43908136 43908176 41 TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTGTATGAAAT TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTTTATGAAAT < 41bp 1 0.467760412387878 1 0.452737003564835 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908156 chr11:43908168 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_27610 0 0 1 4 3 ALKBH3 chr11:43908156 3'AG 43908156 Downstream 13bp
chr11 43908168 43908168 1 + G T LUAD 43908156 + 43908136 43908176 41 TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTGTATGAAAT TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTTTATGAAAT < 41bp 1 0.467760412387878 1 0.452737003564835 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908156 chr11:43908168 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_27610 0 0 1 4 3 ALKBH3 chr11:43908159 3'AG 43908159 Downstream 10bp
chr11 43908168 43908168 1 + G T LUAD 43908156 + 43908136 43908176 41 TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTGTATGAAAT TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTTTATGAAAT < 41bp 1 0.467760412387878 1 0.452737003564835 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908156 chr11:43908168 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_27610 0 0 1 4 3 ALKBH3 chr11:43908203 5'GT 43908203 Upstream 36bp
chr7 91714919 91714919 1 + A G LUAD 91714906 + 91714886 91714926 41 CCATTCTATTCAGCAGGTTTCAGAACCTTGGCTAGAAGAGA CCATTCTATTCAGCAGGTTTCAGAACCTTGGCTGGAAGAGA < 41bp 1 0.347071633968542 1 0.757543206214905 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714906 chr7:91714919 synonymous SNV . 0 34 hm5C_associated_SNPs_27611 0 0 1 0 1 AKAP9 chr7:91715000 5'GT 91715000 Upstream 82bp
chr7 91714919 91714919 1 + A G LUAD 91714912 + 91714892 91714932 41 TATTCAGCAGGTTTCAGAACCTTGGCTAGAAGAGAGAAAAG TATTCAGCAGGTTTCAGAACCTTGGCTGGAAGAGAGAAAAG < 41bp 1 0.172972685047759 1 0.0967861711978912 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714912 chr7:91714919 synonymous SNV . 0 28 hm5C_associated_SNPs_27612 0 0 1 0 1 AKAP9 chr7:91715000 5'GT 91715000 Upstream 82bp
chr7 91714919 91714919 1 + A G LUAD 91714917 + 91714897 91714937 41 AGCAGGTTTCAGAACCTTGGCTAGAAGAGAGAAAAGCTTAC AGCAGGTTTCAGAACCTTGGCTGGAAGAGAGAAAAGCTTAC < 41bp 1 0.49981155868339 1 0.342662781476974 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714917 chr7:91714919 synonymous SNV . 0 23 hm5C_associated_SNPs_27613 0 0 1 0 1 AKAP9 chr7:91715000 5'GT 91715000 Upstream 82bp
chr22 44332968 44332968 1 + C T LUAD 44332984 + 44332964 44333004 41 CATCCTCAGAAGGGATGGATCCTGAGGTCGCCATGCCCAGC CATCTTCAGAAGGGATGGATCCTGAGGTCGCCATGCCCAGC < 41bp 1 0.608829055137804 1 0.114076793193817 experiment 0.782341889724391 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44332984 chr22:44332968 synonymous SNV . 0 5 hm5C_associated_SNPs_27614 0 0 1 0 1 PNPLA3 chr22:44332931 3'AG 44332931 Downstream 38bp
chr7 128491313 128491313 1 + C A LUAD 128491320 + 128491300 128491340 41 TTCTATGTGGATGCCATCAACAGCCGCCATGTCAGTGCCTA TTCTATGTGGATGACATCAACAGCCGCCATGTCAGTGCCTA < 41bp 1 0.328270222479229 1 0.74024498462677 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128491320 chr7:128491313 nonsynonymous SNV 0.995 3 14 hm5C_associated_SNPs_27616 0 0 1 0 1 FLNC chr7:128491286 3'AG 128491286 Downstream 28bp
chr14 102502947 102502947 1 + G T LUAD 102502965 + 102502945 102502985 41 GTGCACTGAGATTCGGTAACCCCCTTCTGGTCCAGGTTGGT GTTCACTGAGATTCGGTAACCCCCTTCTGGTCCAGGTTGGT < 41bp 1 0.0429143885530687 1 0.0332762897014618 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102502965 chr14:102502947 nonsynonymous SNV 0.674 1 3 hm5C_associated_SNPs_27618 0 0 1 0 1 DYNC1H1 chr14:102502979 5'GT 102502979 Upstream 33bp
chr14 102502947 102502947 1 + G T LUAD 102502967 + 102502947 102502987 41 GCACTGAGATTCGGTAACCCCCTTCTGGTCCAGGTTGGTGT TCACTGAGATTCGGTAACCCCCTTCTGGTCCAGGTTGGTGT < 41bp 1 0.0095698430143396 1 0.0272918939590454 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102502967 chr14:102502947 nonsynonymous SNV 0.674 1 1 hm5C_associated_SNPs_27619 0 0 1 0 1 DYNC1H1 chr14:102502979 5'GT 102502979 Upstream 33bp
chr1 65895708 65895708 1 + G T LUAD 65895720 + 65895700 65895740 41 GATTTCCTGTTATTCTTGCTCGTGTGGCTGTGGTAAGTTTT GATTTCCTTTTATTCTTGCTCGTGTGGCTGTGGTAAGTTTT < 41bp 1 0.171009075035402 1 0.138167768716812 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LEPROT ENSG00000213625 CDS Human protein_coding chr1:65895720 chr1:65895708 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_27620 0 0 1 0 1 LEPROT chr1:65895731 5'GT 65895731 Upstream 24bp
chr1 248039252 248039252 1 + G A LUAD 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGAGTCTGCTCTTGACCACCGACCTGCGCAGTGTGCA < 41bp 1 0.657704924698065 1 0.204916596412659 experiment 0.68459015060387 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039252 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_27621 0 0 0 0 2 TRIM58 chr1:248039202 3'AG 248039202 Downstream 51bp
chr1 248039252 248039252 1 + G A LUAD 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGAGTCTGCTCTTGACCACCGACCTGCGCAGTGTGCA < 41bp 1 0.657704924698065 1 0.204916596412659 experiment 0.68459015060387 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039252 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_27621 0 0 0 0 2 TRIM58 chr1:248039339 5'GT 248039339 Upstream 88bp
chr6 131900276 131900276 1 + C A LUAD 131900277 + 131900257 131900297 41 ATGTGAAGGATTATGGGGACCTGCCCTTTGCTGACATCCCT ATGTGAAGGATTATGGGGAACTGCCCTTTGCTGACATCCCT < 41bp 1 0.387114077598675 1 0.0702389478683472 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARG1 ENSG00000118520 CDS Human protein_coding chr6:131900277 chr6:131900276 nonsynonymous SNV 0.728 2 20 hm5C_associated_SNPs_27624 0 0 0 0 2 ARG1 chr6:131900227 3'AG 131900227 Downstream 50bp
chr6 131900276 131900276 1 + C A LUAD 131900277 + 131900257 131900297 41 ATGTGAAGGATTATGGGGACCTGCCCTTTGCTGACATCCCT ATGTGAAGGATTATGGGGAACTGCCCTTTGCTGACATCCCT < 41bp 1 0.387114077598675 1 0.0702389478683472 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARG1 ENSG00000118520 CDS Human protein_coding chr6:131900277 chr6:131900276 nonsynonymous SNV 0.728 2 20 hm5C_associated_SNPs_27624 0 0 0 0 2 ARG1 chr6:131900251 3'AG 131900251 Downstream 26bp
chr3 47447462 47447462 1 + C A LUAD 47447468 + 47447448 47447488 41 CCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGC CCTTCGCCTACCTAAGGGAGCACTTCCCTCAAGCCTACAGC < 41bp 1 0.0669482168103135 1 0.037454754114151 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47447468 chr3:47447462 synonymous SNV . 0 15 hm5C_associated_SNPs_27625 0 0 1 0 3 PTPN23 chr3:47447405 3'AG 47447405 Downstream 58bp
chr3 47447462 47447462 1 + C A LUAD 47447468 + 47447448 47447488 41 CCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGC CCTTCGCCTACCTAAGGGAGCACTTCCCTCAAGCCTACAGC < 41bp 1 0.0669482168103135 1 0.037454754114151 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47447468 chr3:47447462 synonymous SNV . 0 15 hm5C_associated_SNPs_27625 0 0 1 0 3 PTPN23 chr3:47447435 3'AG 47447435 Downstream 28bp
chr3 47447462 47447462 1 + C A LUAD 47447468 + 47447448 47447488 41 CCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGC CCTTCGCCTACCTAAGGGAGCACTTCCCTCAAGCCTACAGC < 41bp 1 0.0669482168103135 1 0.037454754114151 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47447468 chr3:47447462 synonymous SNV . 0 15 hm5C_associated_SNPs_27625 0 0 1 0 3 PTPN23 chr3:47447536 5'GT 47447536 Upstream 75bp
chr11 128680406 128680406 1 + C T LUAD 128680424 + 128680404 128680444 41 AGCGCCAACGCCAGCTGTATCACCTGGGAGGGGACCAACGG AGTGCCAACGCCAGCTGTATCACCTGGGAGGGGACCAACGG < 41bp 1 0.783381375212996 1 0.579033970832825 experiment 0.433237249574008 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FLI1 ENSG00000151702 CDS Human protein_coding chr11:128680424 chr11:128680406 synonymous SNV . 0 3 hm5C_associated_SNPs_27626 0 0 0 0 1 FLI1 chr11:128680354 3'AG 128680354 Downstream 53bp
chr11 73941322 73941322 1 + G A LUAD 73941327 + 73941307 73941347 41 TTGAAGCCATGTATGGGGACCTTCCTCCTCCAATTATGCTG TTGAAGCCATGTATGAGGACCTTCCTCCTCCAATTATGCTG < 41bp 1 0.0634675221203389 1 0.0399886071681976 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PPME1 ENSG00000214517 CDS Human protein_coding chr11:73941327 chr11:73941322 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_27627 0 0 1 0 1 PPME1 chr11:73941290 3'AG 73941290 Downstream 33bp
chr12 6979504 6979504 1 + C A LUAD 6979508 + 6979488 6979528 41 CTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGGACAT CTTGTGGGTGGTGCTTACCTCAAGCCCGAATTCGTGGACAT < 41bp 1 0.608681205807432 1 0.735070586204529 experiment 0.782637588385136 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979508 chr12:6979504 nonsynonymous SNV 0.977 4 17 hm5C_associated_SNPs_27628 0 0 1 0 1 TPI1 chr12:6979429 3'AG 6979429 Downstream 76bp
chr12 6979503 6979503 1 + T A LUAD 6979504 + 6979484 6979524 41 CTTCCTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGG CTTCCTTGTGGGTGGTGCTACCCTCAAGCCCGAATTCGTGG < 41bp 1 0.106803588438447 1 0.0291833579540253 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979504 chr12:6979503 nonsynonymous SNV 0.973 3 20 hm5C_associated_SNPs_27629 0 0 1 0 1 TPI1 chr12:6979429 3'AG 6979429 Downstream 75bp
chr12 6979503 6979503 1 + T A LUAD 6979508 + 6979488 6979528 41 CTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGGACAT CTTGTGGGTGGTGCTACCCTCAAGCCCGAATTCGTGGACAT < 41bp 1 0.599895741896045 1 0.52504962682724 experiment 0.80020851620791 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979508 chr12:6979503 nonsynonymous SNV 0.973 3 16 hm5C_associated_SNPs_27630 0 0 1 0 1 TPI1 chr12:6979429 3'AG 6979429 Downstream 75bp
chr6 158492670 158492670 1 + G A LUAD 158492660 + 158492640 158492680 41 AGCCATCGACACAGTGAAGACGGGCATGGGGGGCAAGGCGG AGCCATCGACACAGTGAAGACGGGCATGGGAGGCAAGGCGG < 41bp 1 0.743306994834526 1 0.715831160545349 experiment 0.513386010330948 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158492660 chr6:158492670 synonymous SNV . 0 31 hm5C_associated_SNPs_27631 0 0 1 0 1 SYNJ2 chr6:158492634 3'AG 158492634 Downstream 37bp
chr10 7785194 7785194 1 + C A LUAD 7785208 + 7785188 7785228 41 AAAAATCCTCAACCTGGTTTCTGACCCAGAATCAGGTAAAA AAAAATACTCAACCTGGTTTCTGACCCAGAATCAGGTAAAA < 41bp 1 0.15342769077741 1 0.219612687826157 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7785208 chr10:7785194 synonymous SNV . 0 7 hm5C_associated_SNPs_27635 0 0 0 0 2 ITIH2 chr10:7785109 3'AG 7785109 Downstream 86bp
chr10 7785194 7785194 1 + C A LUAD 7785208 + 7785188 7785228 41 AAAAATCCTCAACCTGGTTTCTGACCCAGAATCAGGTAAAA AAAAATACTCAACCTGGTTTCTGACCCAGAATCAGGTAAAA < 41bp 1 0.15342769077741 1 0.219612687826157 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7785208 chr10:7785194 synonymous SNV . 0 7 hm5C_associated_SNPs_27635 0 0 0 0 2 ITIH2 chr10:7785222 5'GT 7785222 Upstream 29bp
chr20 31021635 31021635 1 + G C LUAD 31021621 + 31021601 31021641 41 TCCTTTCCCGAAAAGAAGCCCCGGCTTGAAGATCGTCAGTC TCCTTTCCCGAAAAGAAGCCCCGGCTTGAAGATCCTCAGTC < 41bp 1 0.16925067274997 1 0.237145930528641 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021621 chr20:31021635 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_27637 0 0 1 0 1 ASXL1 chr20:31021720 5'GT 31021720 Upstream 86bp
chr16 72142724 72142724 1 + G T LUAD 72142736 + 72142716 72142756 41 GAACATCCGCACAGGGATGCCCTGCCACTTGCACCCCACCA GAACATCCTCACAGGGATGCCCTGCCACTTGCACCCCACCA < 41bp 1 0.0844352780791497 1 0.092639684677124 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72142736 chr16:72142724 nonsynonymous SNV 0.961 1 9 hm5C_associated_SNPs_27638 0 0 0 0 1 DHX38 chr16:72142699 3'AG 72142699 Downstream 26bp
chr7 27827104 27827104 1 + T A LUAD 27827088 + 27827068 27827108 41 CCAAGCTTATGTCAGAGGTCCAGACTTTAAAAAATTTAGAT CCAAGCTTATGTCAGAGGTCCAGACTTTAAAAAATTAAGAT < 41bp 1 0.134637739315804 1 0.284632503986359 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27827088 chr7:27827104 stopgain 1.000 0 37 hm5C_associated_SNPs_27639 0 0 1 0 1 TAX1BP1 chr7:27827037 3'AG 27827037 Downstream 68bp
chr16 72142725 72142725 1 + C T LUAD 72142736 + 72142716 72142756 41 GAACATCCGCACAGGGATGCCCTGCCACTTGCACCCCACCA GAACATCCGTACAGGGATGCCCTGCCACTTGCACCCCACCA < 41bp 1 0.0987779668676286 1 0.0576693415641785 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72142736 chr16:72142725 synonymous SNV . 0 10 hm5C_associated_SNPs_27640 0 0 0 0 2 DHX38 chr16:72142699 3'AG 72142699 Downstream 27bp
chr16 72142725 72142725 1 + C T LUAD 72142736 + 72142716 72142756 41 GAACATCCGCACAGGGATGCCCTGCCACTTGCACCCCACCA GAACATCCGTACAGGGATGCCCTGCCACTTGCACCCCACCA < 41bp 1 0.0987779668676286 1 0.0576693415641785 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72142736 chr16:72142725 synonymous SNV . 0 10 hm5C_associated_SNPs_27640 0 0 0 0 2 DHX38 chr16:72142824 5'GT 72142824 Upstream 100bp
chr7 142459785 142459785 1 + G A LUAD 142459765 + 142459745 142459785 41 CATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACG CATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACA < 41bp 1 0.344669235991048 1 0.151968151330948 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459765 chr7:142459785 nonsynonymous SNV 0.000 1 41 hm5C_associated_SNPs_27641 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 94bp
chr7 142459785 142459785 1 + G A LUAD 142459766 + 142459746 142459786 41 ATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGC ATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACAC < 41bp 1 0.392924440069784 1 0.17532616853714 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459766 chr7:142459785 nonsynonymous SNV 0.000 1 40 hm5C_associated_SNPs_27642 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 94bp
chr7 142459785 142459785 1 + G A LUAD 142459768 + 142459748 142459788 41 CATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGCCC CATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACACCC < 41bp 1 0.745014919232695 1 0.679953753948212 experiment 0.50997016153461 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459768 chr7:142459785 nonsynonymous SNV 0.000 1 38 hm5C_associated_SNPs_27643 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 94bp
chr7 142459785 142459785 1 + G A LUAD 142459770 + 142459750 142459790 41 TGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGC TGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACACCCGC < 41bp 1 0.347948792175124 1 0.104953467845917 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459770 chr7:142459785 nonsynonymous SNV 0.000 1 36 hm5C_associated_SNPs_27644 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 94bp
chr7 142459785 142459785 1 + G A LUAD 142459774 + 142459754 142459794 41 AATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGCGTGT AATCAAGCTCTCCTCACGTGCAGTAATCAACACCCGCGTGT < 41bp 1 0.688776931486466 1 0.0605171322822571 experiment 0.622446137027068 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459774 chr7:142459785 nonsynonymous SNV 0.000 1 32 hm5C_associated_SNPs_27645 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 94bp
chr7 142459785 142459785 1 + G A LUAD 142459781 + 142459761 142459801 41 CTCTCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCAT CTCTCCTCACGTGCAGTAATCAACACCCGCGTGTCCACCAT < 41bp 1 0.770719654964611 1 0.812281012535095 experiment 0.458560690070779 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459781 chr7:142459785 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_27646 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 94bp
chr7 142459785 142459785 1 + G A LUAD 142459784 + 142459764 142459804 41 TCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTC TCCTCACGTGCAGTAATCAACACCCGCGTGTCCACCATCTC < 41bp 1 0.580259204183171 1 0.141888111829758 experiment 0.839481591633658 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459784 chr7:142459785 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_27647 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 94bp
chr7 142459785 142459785 1 + G A LUAD 142459786 + 142459766 142459806 41 CTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTC CTCACGTGCAGTAATCAACACCCGCGTGTCCACCATCTCTC < 41bp 1 0.52497577060219 1 0.0478902757167816 experiment 0.950048458795619 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459786 chr7:142459785 nonsynonymous SNV 0.000 1 20 hm5C_associated_SNPs_27648 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 94bp
chr7 142459785 142459785 1 + G A LUAD 142459787 + 142459767 142459807 41 TCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCT TCACGTGCAGTAATCAACACCCGCGTGTCCACCATCTCTCT < 41bp 1 0.568529951422655 1 0.0683120787143707 experiment 0.862940097154691 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459787 chr7:142459785 nonsynonymous SNV 0.000 1 19 hm5C_associated_SNPs_27649 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 94bp
chr7 142459785 142459785 1 + G A LUAD 142459788 + 142459768 142459808 41 CACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCTG CACGTGCAGTAATCAACACCCGCGTGTCCACCATCTCTCTG < 41bp 1 0.799280446926456 1 0.0809596478939056 experiment 0.401439106147089 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459788 chr7:142459785 nonsynonymous SNV 0.000 1 18 hm5C_associated_SNPs_27650 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 94bp
chr7 142459785 142459785 1 + G A LUAD 142459790 + 142459770 142459810 41 CGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCC CGTGCAGTAATCAACACCCGCGTGTCCACCATCTCTCTGCC < 41bp 1 0.433743766361404 1 0.168707549571991 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459790 chr7:142459785 nonsynonymous SNV 0.000 1 16 hm5C_associated_SNPs_27651 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 94bp
chr7 142459785 142459785 1 + G A LUAD 142459795 + 142459775 142459815 41 AGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCG AGTAATCAACACCCGCGTGTCCACCATCTCTCTGCCCACCG < 41bp 1 0.353147417763208 1 0.086677759885788 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459795 chr7:142459785 nonsynonymous SNV 0.000 1 11 hm5C_associated_SNPs_27652 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 94bp
chr7 142459785 142459785 1 + G A LUAD 142459798 + 142459778 142459818 41 AATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCC AATCAACACCCGCGTGTCCACCATCTCTCTGCCCACCGCCC < 41bp 1 0.174152139259467 1 0.0269918143749237 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459798 chr7:142459785 nonsynonymous SNV 0.000 1 8 hm5C_associated_SNPs_27653 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 94bp
chr7 142459785 142459785 1 + G A LUAD 142459799 + 142459779 142459819 41 ATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCC ATCAACACCCGCGTGTCCACCATCTCTCTGCCCACCGCCCC < 41bp 1 0.44380772721018 1 0.192837476730347 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459799 chr7:142459785 nonsynonymous SNV 0.000 1 7 hm5C_associated_SNPs_27654 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 94bp
chr7 142459785 142459785 1 + G A LUAD 142459802 + 142459782 142459822 41 AACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCC AACACCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCC < 41bp 1 0.466937419905853 1 0.338277280330658 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459802 chr7:142459785 nonsynonymous SNV 0.000 1 4 hm5C_associated_SNPs_27655 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 94bp
chr7 142459785 142459785 1 + G A LUAD 142459804 + 142459784 142459824 41 CGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAG CACCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAG < 41bp 1 0.654101169898553 1 0.28865909576416 experiment 0.691797660202895 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459804 chr7:142459785 nonsynonymous SNV 0.000 1 2 hm5C_associated_SNPs_27656 1 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 94bp
chr3 50091820 50091820 1 + C A LUAD 50091805 + 50091785 50091825 41 TGGGCACCGATCTTCCTGTTCATTCTGCAAGAACCCAAGAG TGGGCACCGATCTTCCTGTTCATTCTGCAAGAACCAAAGAG < 41bp 1 0.0535850327176958 1 0.020379364490509 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50091805 chr3:50091820 nonsynonymous SNV 0.960 3 36 hm5C_associated_SNPs_27657 0 0 1 0 1 RBM6 chr3:50091828 5'GT 50091828 Upstream 9bp
chr1 11080565 11080565 1 + G C LUAD 11080572 + 11080552 11080592 41 GAGGATGAGCTGCGGGAGTTCTTCTCTCAGTACGGGGATGT GAGGATGAGCTGCCGGAGTTCTTCTCTCAGTACGGGGATGT < 41bp 1 0.483989896190718 1 0.048504650592804 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TARDBP ENSG00000120948 CDS Human protein_coding chr1:11080572 chr1:11080565 nonsynonymous SNV 0.967 4 14 hm5C_associated_SNPs_27658 0 0 1 0 2 TARDBP chr1:11080486 3'AG 11080486 Downstream 80bp
chr1 11080565 11080565 1 + G C LUAD 11080572 + 11080552 11080592 41 GAGGATGAGCTGCGGGAGTTCTTCTCTCAGTACGGGGATGT GAGGATGAGCTGCCGGAGTTCTTCTCTCAGTACGGGGATGT < 41bp 1 0.483989896190718 1 0.048504650592804 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TARDBP ENSG00000120948 CDS Human protein_coding chr1:11080572 chr1:11080565 nonsynonymous SNV 0.967 4 14 hm5C_associated_SNPs_27658 0 0 1 0 2 TARDBP chr1:11080656 5'GT 11080656 Upstream 92bp
chr11 43411234 43411234 1 + A C LUAD 43411217 + 43411197 43411237 41 AACAGAAACAATTAGTTGCTCAAAAAATTCACATAGAAGAG AACAGAAACAATTAGTTGCTCAAAAAATTCACATAGACGAG < 41bp 1 0.432703979899932 1 0.327079117298126 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTC17 ENSG00000052841 CDS Human protein_coding chr11:43411217 chr11:43411234 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_27666 0 0 1 0 1 TTC17 chr11:43411202 3'AG 43411202 Downstream 33bp
chrX 107911647 107911647 1 + G T LUAD 107911644 + 107911624 107911664 41 TTCACGGTTTCCCTGGTGTGCAGGGTCCCCCAGGCCCTCCT TTCACGGTTTCCCTGGTGTGCAGTGTCCCCCAGGCCCTCCT < 41bp 1 0.489647903110366 1 0.283250570297241 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107911644 chrX:107911647 nonsynonymous SNV 0.979 3 24 hm5C_associated_SNPs_27667 0 0 1 0 2 COL4A5 chrX:107911549 3'AG 107911549 Downstream 99bp
chrX 107911647 107911647 1 + G T LUAD 107911644 + 107911624 107911664 41 TTCACGGTTTCCCTGGTGTGCAGGGTCCCCCAGGCCCTCCT TTCACGGTTTCCCTGGTGTGCAGTGTCCCCCAGGCCCTCCT < 41bp 1 0.489647903110366 1 0.283250570297241 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107911644 chrX:107911647 nonsynonymous SNV 0.979 3 24 hm5C_associated_SNPs_27667 0 0 1 0 2 COL4A5 chrX:107911734 5'GT 107911734 Upstream 88bp
chr2 32673994 32673994 1 + C T LUAD 32673982 + 32673962 32674002 41 GTCAGATGAAATTGATTTATCAGATGTCCTTTCAGGTAGTG GTCAGATGAAATTGATTTATCAGATGTCCTTTTAGGTAGTG < 41bp 1 0.140215535225281 1 0.430282771587372 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673982 chr2:32673994 nonsynonymous SNV 0.999 1 33 hm5C_associated_SNPs_27668 0 0 1 0 1 BIRC6 chr2:32673996 5'GT 32673996 Upstream 3bp
chr2 32673994 32673994 1 + C T LUAD 32673989 + 32673969 32674009 41 GAAATTGATTTATCAGATGTCCTTTCAGGTAGTGATTTCTT GAAATTGATTTATCAGATGTCCTTTTAGGTAGTGATTTCTT < 41bp 1 0.00714926758746728 1 0.0261027812957764 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673989 chr2:32673994 nonsynonymous SNV 0.999 1 26 hm5C_associated_SNPs_27669 0 0 1 0 1 BIRC6 chr2:32673996 5'GT 32673996 Upstream 3bp
chr2 32673994 32673994 1 + C T LUAD 32673990 + 32673970 32674010 41 AAATTGATTTATCAGATGTCCTTTCAGGTAGTGATTTCTTT AAATTGATTTATCAGATGTCCTTTTAGGTAGTGATTTCTTT < 41bp 1 0.00960285201826464 1 0.0573183596134186 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673990 chr2:32673994 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_27670 0 0 1 0 1 BIRC6 chr2:32673996 5'GT 32673996 Upstream 3bp
chr6 7572172 7572172 1 + G C LUAD 7572161 + 7572141 7572181 41 CCAACAGAGAAAATGACAAGCAAGAAACATGGATGCTGATG CCAACAGAGAAAATGACAAGCAAGAAACATGCATGCTGATG < 41bp 1 0.489505918564434 1 0.788382768630981 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572161 chr6:7572172 nonsynonymous SNV 0.998 2 32 hm5C_associated_SNPs_27672 0 0 1 0 1 DSP chr6:7572075 3'AG 7572075 Downstream 98bp
chr6 7572172 7572172 1 + G C LUAD 7572176 + 7572156 7572196 41 ACAAGCAAGAAACATGGATGCTGATGGAGCTGCAGAAGATT ACAAGCAAGAAACATGCATGCTGATGGAGCTGCAGAAGATT < 41bp 1 0.205022038282134 1 0.0895650088787079 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572176 chr6:7572172 nonsynonymous SNV 0.998 2 17 hm5C_associated_SNPs_27673 0 0 1 0 1 DSP chr6:7572075 3'AG 7572075 Downstream 98bp
chr1 17272844 17272844 1 + G A LUAD 17272843 + 17272823 17272863 41 GACTCCCTGTCCAAGCTGAGCGCCCTCAACGAGAGCCTTGC GACTCCCTGTCCAAGCTGAGCACCCTCAACGAGAGCCTTGC < 41bp 1 0.121850636629661 1 0.0398503541946411 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CROCC ENSG00000058453 CDS Human protein_coding chr1:17272843 chr1:17272844 nonsynonymous SNV 0.827 2 22 hm5C_associated_SNPs_27674 0 0 0 0 2 CROCC chr1:17272754 3'AG 17272754 Downstream 91bp
chr1 17272844 17272844 1 + G A LUAD 17272843 + 17272823 17272863 41 GACTCCCTGTCCAAGCTGAGCGCCCTCAACGAGAGCCTTGC GACTCCCTGTCCAAGCTGAGCACCCTCAACGAGAGCCTTGC < 41bp 1 0.121850636629661 1 0.0398503541946411 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CROCC ENSG00000058453 CDS Human protein_coding chr1:17272843 chr1:17272844 nonsynonymous SNV 0.827 2 22 hm5C_associated_SNPs_27674 0 0 0 0 2 CROCC chr1:17272900 5'GT 17272900 Upstream 57bp
chr11 66258798 66258798 1 + C A LUAD 66258782 + 66258762 66258802 41 AGCTATGAATTCCGGGGAAGCCCTTTCCAGGTGACCCGGGG AGCTATGAATTCCGGGGAAGCCCTTTCCAGGTGACCAGGGG < 41bp 1 0.12437872573189 1 0.152836114168167 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66258782 chr11:66258798 synonymous SNV . 0 37 hm5C_associated_SNPs_27675 0 0 0 0 2 DPP3 chr11:66258724 3'AG 66258724 Downstream 75bp
chr11 66258798 66258798 1 + C A LUAD 66258782 + 66258762 66258802 41 AGCTATGAATTCCGGGGAAGCCCTTTCCAGGTGACCCGGGG AGCTATGAATTCCGGGGAAGCCCTTTCCAGGTGACCAGGGG < 41bp 1 0.12437872573189 1 0.152836114168167 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66258782 chr11:66258798 synonymous SNV . 0 37 hm5C_associated_SNPs_27675 0 0 0 0 2 DPP3 chr11:66258854 5'GT 66258854 Upstream 57bp
chr11 61913164 61913164 1 + G T LUAD 61913150 + 61913130 61913170 41 GGCCAAGAAAAAGGCGGCGGCCAAGAAGATGGAGGAGGTGG GGCCAAGAAAAAGGCGGCGGCCAAGAAGATGGAGTAGGTGG < 41bp 1 0.114226550610864 1 0.360382199287415 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61913150 chr11:61913164 stopgain 1.000 1 35 hm5C_associated_SNPs_27676 0 0 1 0 3 INCENP chr11:61913101 3'AG 61913101 Downstream 64bp
chr11 61913164 61913164 1 + G T LUAD 61913150 + 61913130 61913170 41 GGCCAAGAAAAAGGCGGCGGCCAAGAAGATGGAGGAGGTGG GGCCAAGAAAAAGGCGGCGGCCAAGAAGATGGAGTAGGTGG < 41bp 1 0.114226550610864 1 0.360382199287415 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61913150 chr11:61913164 stopgain 1.000 1 35 hm5C_associated_SNPs_27676 0 0 1 0 3 INCENP chr11:61913223 5'GT 61913223 Upstream 60bp
chr11 61913164 61913164 1 + G T LUAD 61913150 + 61913130 61913170 41 GGCCAAGAAAAAGGCGGCGGCCAAGAAGATGGAGGAGGTGG GGCCAAGAAAAAGGCGGCGGCCAAGAAGATGGAGTAGGTGG < 41bp 1 0.114226550610864 1 0.360382199287415 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61913150 chr11:61913164 stopgain 1.000 1 35 hm5C_associated_SNPs_27676 0 0 1 0 3 INCENP chr11:61913235 5'GT 61913235 Upstream 72bp
chr11 61913164 61913164 1 + G T LUAD 61913151 + 61913131 61913171 41 GCCAAGAAAAAGGCGGCGGCCAAGAAGATGGAGGAGGTGGA GCCAAGAAAAAGGCGGCGGCCAAGAAGATGGAGTAGGTGGA < 41bp 1 0.646824655119984 1 0.737313508987427 experiment 0.706350689760032 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61913151 chr11:61913164 stopgain 1.000 1 34 hm5C_associated_SNPs_27677 0 0 1 0 3 INCENP chr11:61913101 3'AG 61913101 Downstream 64bp
chr11 61913164 61913164 1 + G T LUAD 61913151 + 61913131 61913171 41 GCCAAGAAAAAGGCGGCGGCCAAGAAGATGGAGGAGGTGGA GCCAAGAAAAAGGCGGCGGCCAAGAAGATGGAGTAGGTGGA < 41bp 1 0.646824655119984 1 0.737313508987427 experiment 0.706350689760032 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61913151 chr11:61913164 stopgain 1.000 1 34 hm5C_associated_SNPs_27677 0 0 1 0 3 INCENP chr11:61913223 5'GT 61913223 Upstream 60bp
chr11 61913164 61913164 1 + G T LUAD 61913151 + 61913131 61913171 41 GCCAAGAAAAAGGCGGCGGCCAAGAAGATGGAGGAGGTGGA GCCAAGAAAAAGGCGGCGGCCAAGAAGATGGAGTAGGTGGA < 41bp 1 0.646824655119984 1 0.737313508987427 experiment 0.706350689760032 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61913151 chr11:61913164 stopgain 1.000 1 34 hm5C_associated_SNPs_27677 0 0 1 0 3 INCENP chr11:61913235 5'GT 61913235 Upstream 72bp
chr11 61913164 61913164 1 + G T LUAD 61913174 + 61913154 61913194 41 GAAGATGGAGGAGGTGGAAGCACGCAGGAAGCAGGAAGAGG GAAGATGGAGTAGGTGGAAGCACGCAGGAAGCAGGAAGAGG < 41bp 1 0.428264749710506 1 0.337863504886627 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61913174 chr11:61913164 stopgain 1.000 1 11 hm5C_associated_SNPs_27678 0 0 1 0 3 INCENP chr11:61913101 3'AG 61913101 Downstream 64bp
chr11 61913164 61913164 1 + G T LUAD 61913174 + 61913154 61913194 41 GAAGATGGAGGAGGTGGAAGCACGCAGGAAGCAGGAAGAGG GAAGATGGAGTAGGTGGAAGCACGCAGGAAGCAGGAAGAGG < 41bp 1 0.428264749710506 1 0.337863504886627 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61913174 chr11:61913164 stopgain 1.000 1 11 hm5C_associated_SNPs_27678 0 0 1 0 3 INCENP chr11:61913223 5'GT 61913223 Upstream 60bp
chr11 61913164 61913164 1 + G T LUAD 61913174 + 61913154 61913194 41 GAAGATGGAGGAGGTGGAAGCACGCAGGAAGCAGGAAGAGG GAAGATGGAGTAGGTGGAAGCACGCAGGAAGCAGGAAGAGG < 41bp 1 0.428264749710506 1 0.337863504886627 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61913174 chr11:61913164 stopgain 1.000 1 11 hm5C_associated_SNPs_27678 0 0 1 0 3 INCENP chr11:61913235 5'GT 61913235 Upstream 72bp
chr21 45736374 45736374 1 + G C LUAD 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACGTGCAGCGCGGAGGGACGCCCTCTGCCTTCGACCGGA < 41bp 1 0.354318662828446 1 0.146379262208939 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736374 synonymous SNV . 0 13 hm5C_associated_SNPs_27680 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 60bp
chr21 45736374 45736374 1 + G C LUAD 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACGTGCAGCGCGGAGGGACGCCCTCTGCCTTCGACCGGA < 41bp 1 0.354318662828446 1 0.146379262208939 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736374 synonymous SNV . 0 13 hm5C_associated_SNPs_27680 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 34bp
chr21 45736374 45736374 1 + G C LUAD 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACGTGCAGCGCGGAGGGACGCCCTCTGCCTTCGACCGGATC < 41bp 1 0.0771801189366266 1 0.0587510764598846 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736374 synonymous SNV . 0 11 hm5C_associated_SNPs_27681 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 60bp
chr21 45736374 45736374 1 + G C LUAD 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACGTGCAGCGCGGAGGGACGCCCTCTGCCTTCGACCGGATC < 41bp 1 0.0771801189366266 1 0.0587510764598846 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736374 synonymous SNV . 0 11 hm5C_associated_SNPs_27681 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 34bp
chr21 45736374 45736374 1 + G C LUAD 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CGTGCAGCGCGGAGGGACGCCCTCTGCCTTCGACCGGATCC < 41bp 1 0.0765143409933381 1 0.0605251789093018 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736374 synonymous SNV . 0 10 hm5C_associated_SNPs_27682 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 60bp
chr21 45736374 45736374 1 + G C LUAD 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CGTGCAGCGCGGAGGGACGCCCTCTGCCTTCGACCGGATCC < 41bp 1 0.0765143409933381 1 0.0605251789093018 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736374 synonymous SNV . 0 10 hm5C_associated_SNPs_27682 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 34bp
chr21 45736374 45736374 1 + G C LUAD 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT GTGCAGCGCGGAGGGACGCCCTCTGCCTTCGACCGGATCCT < 41bp 1 0.320117829164893 1 0.222296088933945 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736374 synonymous SNV . 0 9 hm5C_associated_SNPs_27683 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 60bp
chr21 45736374 45736374 1 + G C LUAD 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT GTGCAGCGCGGAGGGACGCCCTCTGCCTTCGACCGGATCCT < 41bp 1 0.320117829164893 1 0.222296088933945 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736374 synonymous SNV . 0 9 hm5C_associated_SNPs_27683 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 34bp
chr22 19707369 19707369 1 + C T LUAD 19707377 + 19707357 19707397 41 GGTCCACAGCCTCTTCCTGACAGACTTGTACAAGGACCGGA GGTCCACAGCCTTTTCCTGACAGACTTGTACAAGGACCGGA < 41bp 1 0.252677872821887 1 0.125095129013062 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEPT5 ENSG00000184702 CDS Human protein_coding chr22:19707377 chr22:19707369 synonymous SNV . 0 13 hm5C_associated_SNPs_27684 0 0 0 1 1 SEPT5 chr22:19707329 3'AG 19707329 Downstream 41bp
chr15 50789393 50789393 1 + G A LUAD 50789404 + 50789384 50789424 41 AGAAATCTGGAAGTTACCACCTGTGCTTTTAGTGCATCTGA AGAAATCTGAAAGTTACCACCTGTGCTTTTAGTGCATCTGA < 41bp 1 0.261190313023723 1 0.255454897880554 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control USP8 ENSG00000138592 CDS Human protein_coding chr15:50789404 chr15:50789393 stopgain 1.000 1 10 hm5C_associated_SNPs_27688 0 0 1 0 1 USP8 chr15:50789428 5'GT 50789428 Upstream 36bp
chr2 27302068 27302068 1 + G T LUAD 27302048 + 27302028 27302068 41 ACACAGGTTCCAGTGGGGCCCTCAGCCCCGGGGGGCCCCAG ACACAGGTTCCAGTGGGGCCCTCAGCCCCGGGGGGCCCCAT < 41bp 1 0.510712813010793 1 0.196035712957382 experiment 0.978574373978415 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302048 chr2:27302068 nonsynonymous SNV 0.726 1 41 hm5C_associated_SNPs_27690 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 36bp
chr2 27302068 27302068 1 + G T LUAD 27302063 + 27302043 27302083 41 GGGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCC GGGCCCTCAGCCCCGGGGGGCCCCATGCCCAGATTGCCCCC < 41bp 1 0.336669633340947 1 0.110284298658371 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302063 chr2:27302068 nonsynonymous SNV 0.726 1 26 hm5C_associated_SNPs_27691 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 36bp
chr2 27302068 27302068 1 + G T LUAD 27302064 + 27302044 27302084 41 GGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCC GGCCCTCAGCCCCGGGGGGCCCCATGCCCAGATTGCCCCCC < 41bp 1 0.176169061949017 1 0.288736760616302 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302064 chr2:27302068 nonsynonymous SNV 0.726 1 25 hm5C_associated_SNPs_27692 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 36bp
chr2 27302068 27302068 1 + G T LUAD 27302065 + 27302045 27302085 41 GCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCG GCCCTCAGCCCCGGGGGGCCCCATGCCCAGATTGCCCCCCG < 41bp 1 0.267939704860095 1 0.238403469324112 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302065 chr2:27302068 nonsynonymous SNV 0.726 1 24 hm5C_associated_SNPs_27693 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 36bp
chr2 27302068 27302068 1 + G T LUAD 27302066 + 27302046 27302086 41 CCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCGG CCCTCAGCCCCGGGGGGCCCCATGCCCAGATTGCCCCCCGG < 41bp 1 0.284343338803246 1 0.210852652788162 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302066 chr2:27302068 nonsynonymous SNV 0.726 1 23 hm5C_associated_SNPs_27694 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 36bp
chr2 232576100 232576100 1 + G A LUAD 232576110 + 232576090 232576130 41 GGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCTG GGCAGAAAATAGAAGAGACGCCCCTGCTAACGGGAATGCTG < 41bp 1 0.210974045064229 1 0.0224751532077789 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576110 chr2:232576100 stopgain 1.000 2 11 hm5C_associated_SNPs_27695 0 0 1 0 2 PTMA chr2:232576058 3'AG 232576058 Downstream 43bp
chr2 232576100 232576100 1 + G A LUAD 232576110 + 232576090 232576130 41 GGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCTG GGCAGAAAATAGAAGAGACGCCCCTGCTAACGGGAATGCTG < 41bp 1 0.210974045064229 1 0.0224751532077789 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576110 chr2:232576100 stopgain 1.000 2 11 hm5C_associated_SNPs_27695 0 0 1 0 2 PTMA chr2:232576129 5'GT 232576129 Upstream 30bp
chr2 28812608 28812608 1 + C G LUAD 28812604 + 28812584 28812624 41 CACTTCAGCAGCAAGTCTCACTCCCGAGCAGCCAGTGCTCT CACTTCAGCAGCAAGTCTCACTCCGGAGCAGCCAGTGCTCT < 41bp 1 0.440601530408906 1 0.346556842327118 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PLB1 ENSG00000163803 CDS Human protein_coding chr2:28812604 chr2:28812608 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_27696 0 0 0 0 2 PLB1 chr2:28812542 3'AG 28812542 Downstream 67bp
chr2 28812608 28812608 1 + C G LUAD 28812604 + 28812584 28812624 41 CACTTCAGCAGCAAGTCTCACTCCCGAGCAGCCAGTGCTCT CACTTCAGCAGCAAGTCTCACTCCGGAGCAGCCAGTGCTCT < 41bp 1 0.440601530408906 1 0.346556842327118 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PLB1 ENSG00000163803 CDS Human protein_coding chr2:28812604 chr2:28812608 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_27696 0 0 0 0 2 PLB1 chr2:28812637 5'GT 28812637 Upstream 30bp
chr2 28812608 28812608 1 + C G LUAD 28812615 + 28812595 28812635 41 CAAGTCTCACTCCCGAGCAGCCAGTGCTCTCTGGAACAATA CAAGTCTCACTCCGGAGCAGCCAGTGCTCTCTGGAACAATA < 41bp 1 0.0607699580156682 1 0.048957496881485 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PLB1 ENSG00000163803 CDS Human protein_coding chr2:28812615 chr2:28812608 nonsynonymous SNV 0.002 0 14 hm5C_associated_SNPs_27697 0 0 0 0 2 PLB1 chr2:28812542 3'AG 28812542 Downstream 67bp
chr2 28812608 28812608 1 + C G LUAD 28812615 + 28812595 28812635 41 CAAGTCTCACTCCCGAGCAGCCAGTGCTCTCTGGAACAATA CAAGTCTCACTCCGGAGCAGCCAGTGCTCTCTGGAACAATA < 41bp 1 0.0607699580156682 1 0.048957496881485 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PLB1 ENSG00000163803 CDS Human protein_coding chr2:28812615 chr2:28812608 nonsynonymous SNV 0.002 0 14 hm5C_associated_SNPs_27697 0 0 0 0 2 PLB1 chr2:28812637 5'GT 28812637 Upstream 30bp
chr18 633349 633349 1 + G T LUAD 633344 + 633324 633364 41 AAGATGTTACCTGGGCAGGACAGAGGACTGTGTGGGGAACT AAGATGTTACCTGGGCAGGACAGAGTACTGTGTGGGGAACT < 41bp 1 0.431448603839115 1 0.429532319307327 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CLUL1 ENSG00000079101 CDS Human protein_coding chr18:633344 chr18:633349 nonsynonymous SNV 0.041 0 26 hm5C_associated_SNPs_27699 0 0 0 0 2 CLUL1 chr18:633298 3'AG 633298 Downstream 52bp
chr18 633349 633349 1 + G T LUAD 633344 + 633324 633364 41 AAGATGTTACCTGGGCAGGACAGAGGACTGTGTGGGGAACT AAGATGTTACCTGGGCAGGACAGAGTACTGTGTGGGGAACT < 41bp 1 0.431448603839115 1 0.429532319307327 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CLUL1 ENSG00000079101 CDS Human protein_coding chr18:633344 chr18:633349 nonsynonymous SNV 0.041 0 26 hm5C_associated_SNPs_27699 0 0 0 0 2 CLUL1 chr18:633435 5'GT 633435 Upstream 87bp
chr2 27302069 27302069 1 + G T LUAD 27302063 + 27302043 27302083 41 GGGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCC GGGCCCTCAGCCCCGGGGGGCCCCAGTCCCAGATTGCCCCC < 41bp 1 0.404744580450582 1 0.103249430656433 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302063 chr2:27302069 nonsynonymous SNV 0.715 1 27 hm5C_associated_SNPs_27700 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 35bp
chr2 27302069 27302069 1 + G T LUAD 27302064 + 27302044 27302084 41 GGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCC GGCCCTCAGCCCCGGGGGGCCCCAGTCCCAGATTGCCCCCC < 41bp 1 0.285515911357695 1 0.494670808315277 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302064 chr2:27302069 nonsynonymous SNV 0.715 1 26 hm5C_associated_SNPs_27701 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 35bp
chr2 27302069 27302069 1 + G T LUAD 27302065 + 27302045 27302085 41 GCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCG GCCCTCAGCCCCGGGGGGCCCCAGTCCCAGATTGCCCCCCG < 41bp 1 0.437404716660324 1 0.355012893676758 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302065 chr2:27302069 nonsynonymous SNV 0.715 1 25 hm5C_associated_SNPs_27702 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 35bp
chr2 27302069 27302069 1 + G T LUAD 27302066 + 27302046 27302086 41 CCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCGG CCCTCAGCCCCGGGGGGCCCCAGTCCCAGATTGCCCCCCGG < 41bp 1 0.251460028020696 1 0.670376121997833 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302066 chr2:27302069 nonsynonymous SNV 0.715 1 24 hm5C_associated_SNPs_27703 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 35bp
chr1 41289899 41289899 1 + C T LUAD 41289886 + 41289866 41289906 41 TCCCGTTACCCGCCCGTTGCCACCTGCCACCGGCCGGGCAG TCCCGTTACCCGCCCGTTGCCACCTGCCACCGGTCGGGCAG < 41bp 1 0.72160304183154 1 0.203012436628342 experiment 0.55679391633692 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41289886 chr1:41289899 nonsynonymous SNV 0.999 1 34 hm5C_associated_SNPs_27704 0 0 0 0 1 KCNQ4 chr1:41289930 5'GT 41289930 Upstream 32bp
chr19 34868423 34868423 1 + G T LUAD 34868408 + 34868388 34868428 41 CATCTTCGCCCCTGTGCCAGCGTGTCCGGAGCGGTGACTGG CATCTTCGCCCCTGTGCCAGCGTGTCCGGAGCGGTTACTGG < 41bp 1 0.211259597405114 1 0.548024535179138 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868408 chr19:34868423 nonsynonymous SNV 0.997 2 36 hm5C_associated_SNPs_27707 0 0 1 0 1 GPI chr19:34868491 5'GT 34868491 Upstream 69bp
chr19 34868423 34868423 1 + G T LUAD 34868413 + 34868393 34868433 41 TCGCCCCTGTGCCAGCGTGTCCGGAGCGGTGACTGGAAGGG TCGCCCCTGTGCCAGCGTGTCCGGAGCGGTTACTGGAAGGG < 41bp 1 0.673045294375194 1 0.507802367210388 experiment 0.653909411249613 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868413 chr19:34868423 nonsynonymous SNV 0.997 2 31 hm5C_associated_SNPs_27708 0 0 1 0 1 GPI chr19:34868491 5'GT 34868491 Upstream 69bp
chr19 34868425 34868425 1 + C T LUAD 34868408 + 34868388 34868428 41 CATCTTCGCCCCTGTGCCAGCGTGTCCGGAGCGGTGACTGG CATCTTCGCCCCTGTGCCAGCGTGTCCGGAGCGGTGATTGG < 41bp 1 0.204780873905474 1 0.427545875310898 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868408 chr19:34868425 synonymous SNV . 0 38 hm5C_associated_SNPs_27709 0 0 1 0 1 GPI chr19:34868491 5'GT 34868491 Upstream 67bp
chr19 34868425 34868425 1 + C T LUAD 34868413 + 34868393 34868433 41 TCGCCCCTGTGCCAGCGTGTCCGGAGCGGTGACTGGAAGGG TCGCCCCTGTGCCAGCGTGTCCGGAGCGGTGATTGGAAGGG < 41bp 1 0.703903610216931 1 0.442466706037521 experiment 0.592192779566137 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868413 chr19:34868425 synonymous SNV . 0 33 hm5C_associated_SNPs_27710 0 0 1 0 1 GPI chr19:34868491 5'GT 34868491 Upstream 67bp
chr16 67314355 67314355 1 + G A LUAD 67314349 + 67314329 67314369 41 GTAGGGGACCCAGGTCCAAGCAGGGCGATGCCATCTGGCTT GTAGGGGACCCAGGTCCAAGCAGGGCAATGCCATCTGGCTT < 41bp 1 0.766365173863542 1 0.931170105934143 experiment 0.467269652272917 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67314349 chr16:67314355 synonymous SNV . 0 27 hm5C_associated_SNPs_27711 0 0 1 0 2 PLEKHG4 chr16:67314299 3'AG 67314299 Downstream 57bp
chr16 67314355 67314355 1 + G A LUAD 67314349 + 67314329 67314369 41 GTAGGGGACCCAGGTCCAAGCAGGGCGATGCCATCTGGCTT GTAGGGGACCCAGGTCCAAGCAGGGCAATGCCATCTGGCTT < 41bp 1 0.766365173863542 1 0.931170105934143 experiment 0.467269652272917 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67314349 chr16:67314355 synonymous SNV . 0 27 hm5C_associated_SNPs_27711 0 0 1 0 2 PLEKHG4 chr16:67314446 5'GT 67314446 Upstream 92bp
chr14 23794478 23794478 1 + T C LUAD 23794459 + 23794439 23794479 41 CTCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCATG CTCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCACG < 41bp 1 0.282271212107163 1 0.325071275234222 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23794459 chr14:23794478 nonsynonymous SNV 0.995 2 40 hm5C_associated_SNPs_27713 0 0 1 0 1 BCL2L2-PABPN1;PABPN1 chr14:23794456 3'AG 23794456 Downstream 23bp
chr14 23794478 23794478 1 + T C LUAD 23794460 + 23794440 23794480 41 TCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCATGG TCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCACGG < 41bp 1 0.462661350609192 1 0.556021392345428 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23794460 chr14:23794478 nonsynonymous SNV 0.995 2 39 hm5C_associated_SNPs_27714 0 0 1 0 1 BCL2L2-PABPN1;PABPN1 chr14:23794456 3'AG 23794456 Downstream 23bp
chr1 36029491 36029491 1 + G A LUAD 36029505 + 36029485 36029525 41 GGCCCGGCTCCTTAGCACCTCTCCAGGTAAGAACTGGGGAT GGCCCGACTCCTTAGCACCTCTCCAGGTAAGAACTGGGGAT < 41bp 1 0.707516316125605 1 0.924164652824402 experiment 0.584967367748789 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36029505 chr1:36029491 synonymous SNV . 0 7 hm5C_associated_SNPs_27717 0 0 1 0 1 NCDN chr1:36029510 5'GT 36029510 Upstream 20bp
chr22 38209491 38209491 1 + G T LUAD 38209473 + 38209453 38209493 41 TCACTGCCTCCCTCCAGGCCCTGCTGACCCCAGAGGACGCA TCACTGCCTCCCTCCAGGCCCTGCTGACCCCAGAGGACTCA < 41bp 1 0.37458389435355 1 0.0333817303180695 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GCAT ENSG00000100116 CDS Human protein_coding chr22:38209473 chr22:38209491 nonsynonymous SNV 0.332 5 39 hm5C_associated_SNPs_27718 0 0 1 0 1 GCAT chr22:38209470 3'AG 38209470 Downstream 22bp
chr22 47290698 47290698 1 + C T LUAD 47290696 + 47290676 47290716 41 CCAGATCCACATAGACATCCCTCGCATGAGCCCTGAAGCGT CCAGATCCACATAGACATCCCTTGCATGAGCCCTGAAGCGT < 41bp 1 0.11500182299946 1 0.0681600868701935 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBC1D22A ENSG00000054611 CDS Human protein_coding chr22:47290696 chr22:47290698 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_27720 0 0 1 0 2 TBC1D22A chr22:47290680 3'AG 47290680 Downstream 19bp
chr22 47290698 47290698 1 + C T LUAD 47290696 + 47290676 47290716 41 CCAGATCCACATAGACATCCCTCGCATGAGCCCTGAAGCGT CCAGATCCACATAGACATCCCTTGCATGAGCCCTGAAGCGT < 41bp 1 0.11500182299946 1 0.0681600868701935 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBC1D22A ENSG00000054611 CDS Human protein_coding chr22:47290696 chr22:47290698 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_27720 0 0 1 0 2 TBC1D22A chr22:47290742 5'GT 47290742 Upstream 45bp
chr17 80676907 80676907 1 + G A LUAD 80676908 + 80676888 80676928 41 GGAGCGTGCTGGTGATGGAGCACATGGACATGAGGCATCTG GGAGCGTGCTGGTGATGGAACACATGGACATGAGGCATCTG < 41bp 1 0.524809377961316 1 0.0712052881717682 experiment 0.950381244077368 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80676908 chr17:80676907 synonymous SNV . 0 20 hm5C_associated_SNPs_27721 0 0 1 0 1 FN3KRP chr17:80676933 5'GT 80676933 Upstream 27bp
chr17 80676907 80676907 1 + G A LUAD 80676910 + 80676890 80676930 41 AGCGTGCTGGTGATGGAGCACATGGACATGAGGCATCTGAG AGCGTGCTGGTGATGGAACACATGGACATGAGGCATCTGAG < 41bp 1 0.69556811109346 1 0.258817791938782 experiment 0.608863777813081 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80676910 chr17:80676907 synonymous SNV . 0 18 hm5C_associated_SNPs_27722 0 0 1 0 1 FN3KRP chr17:80676933 5'GT 80676933 Upstream 27bp
chr19 1041907 1041907 1 + A G LUAD 1041909 + 1041889 1041929 41 ATCTGTAATGTGAACAACACCTGCTTTCCGCAGCTGACACC ATCTGTAATGTGAACAACGCCTGCTTTCCGCAGCTGACACC < 41bp 1 0.344487086222359 1 0.0634014010429382 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041909 chr19:1041907 nonsynonymous SNV 0.797 1 19 hm5C_associated_SNPs_27726 0 0 0 0 2 ABCA7 chr19:1041830 3'AG 1041830 Downstream 78bp
chr19 1041907 1041907 1 + A G LUAD 1041909 + 1041889 1041929 41 ATCTGTAATGTGAACAACACCTGCTTTCCGCAGCTGACACC ATCTGTAATGTGAACAACGCCTGCTTTCCGCAGCTGACACC < 41bp 1 0.344487086222359 1 0.0634014010429382 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041909 chr19:1041907 nonsynonymous SNV 0.797 1 19 hm5C_associated_SNPs_27726 0 0 0 0 2 ABCA7 chr19:1041971 5'GT 1041971 Upstream 65bp
chr8 104438329 104438329 1 + G T LUAD 104438331 + 104438311 104438351 41 TGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCC TGGAAAATGGATGGGCCATGCTATGGAGACGAGGAAGAGCC < 41bp 1 0.556883579550429 1 0.418458580970764 experiment 0.886232840899141 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438331 chr8:104438329 nonsynonymous SNV 0.999 1 19 hm5C_associated_SNPs_27727 0 0 1 0 2 DCAF13 chr8:104438284 3'AG 104438284 Downstream 46bp
chr8 104438329 104438329 1 + G T LUAD 104438331 + 104438311 104438351 41 TGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCC TGGAAAATGGATGGGCCATGCTATGGAGACGAGGAAGAGCC < 41bp 1 0.556883579550429 1 0.418458580970764 experiment 0.886232840899141 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438331 chr8:104438329 nonsynonymous SNV 0.999 1 19 hm5C_associated_SNPs_27727 0 0 1 0 2 DCAF13 chr8:104438373 5'GT 104438373 Upstream 45bp
chr2 32339791 32339791 1 + G T LUAD 32339810 + 32339790 32339830 41 GGATCTGCAGGCCTTTCAGGCCACCATAGAGCACCTAGTTA GTATCTGCAGGCCTTTCAGGCCACCATAGAGCACCTAGTTA < 41bp 1 0.0824888496077982 1 0.0610367059707642 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32339810 chr2:32339791 nonsynonymous SNV 0.933 0 2 hm5C_associated_SNPs_27729 0 0 1 0 1 SPAST chr2:32339707 3'AG 32339707 Downstream 85bp
chr2 32339791 32339791 1 + G T LUAD 32339811 + 32339791 32339831 41 GATCTGCAGGCCTTTCAGGCCACCATAGAGCACCTAGTTAC TATCTGCAGGCCTTTCAGGCCACCATAGAGCACCTAGTTAC < 41bp 1 0.760944182678618 1 0.233693331480026 experiment 0.478111634642763 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32339811 chr2:32339791 nonsynonymous SNV 0.933 0 1 hm5C_associated_SNPs_27730 0 0 1 0 1 SPAST chr2:32339707 3'AG 32339707 Downstream 85bp
chr13 111077199 111077199 1 + G T LUAD 111077196 + 111077176 111077216 41 AAGGGGAGCCCCCGGAGTAACGGGACCCAAGGGCGACGTGG AAGGGGAGCCCCCGGAGTAACGGTACCCAAGGGCGACGTGG < 41bp 1 0.591017773902194 1 0.687686145305634 experiment 0.817964452195612 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111077196 chr13:111077199 nonsynonymous SNV 0.543 5 24 hm5C_associated_SNPs_27731 0 0 0 0 1 COL4A2 chr13:111077215 5'GT 111077215 Upstream 17bp
chr12 69966000 69966000 1 + G C LUAD 69966003 + 69965983 69966023 41 ACATCCTTCTGTGGGAAGTGCTCGCCTGCCTTCAGTAGGGG ACATCCTTCTGTGGGAACTGCTCGCCTGCCTTCAGTAGGGG < 41bp 1 0.472819246213543 1 0.223111033439636 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FRS2 ENSG00000166225 CDS Human protein_coding chr12:69966003 chr12:69966000 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_27732 0 0 1 0 1 FRS2 chr12:69966061 5'GT 69966061 Upstream 62bp
chr19 3273914 3273914 1 + C T LUAD 3273912 + 3273892 3273932 41 AGCCTGCGGACAGTGAAAGCCGCGGAGGTAGTTGTCATCTC AGCCTGCGGACAGTGAAAGCCGTGGAGGTAGTTGTCATCTC < 41bp 1 0.755845575610443 1 0.598877191543579 experiment 0.488308848779115 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CELF5 ENSG00000161082 CDS Human protein_coding chr19:3273912 chr19:3273914 synonymous SNV . 0 23 hm5C_associated_SNPs_27733 0 0 0 0 1 CELF5 chr19:3273921 5'GT 3273921 Upstream 8bp
chrX 110951607 110951607 1 + G T LUAD 110951614 + 110951594 110951634 41 TTGCCTCTTTCGGGCCATTTCGGAGCAGGTAAAAGGAAAAC TTGCCTCTTTCGGTCCATTTCGGAGCAGGTAAAAGGAAAAC < 41bp 1 0.704712890920547 1 0.780234456062317 experiment 0.590574218158906 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG13 ENSG00000101901 CDS Human protein_coding chrX:110951614 chrX:110951607 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_27735 0 0 1 0 1 ALG13 chrX:110951621 5'GT 110951621 Upstream 15bp
chrX 110951607 110951607 1 + G T LUAD 110951619 + 110951599 110951639 41 TCTTTCGGGCCATTTCGGAGCAGGTAAAAGGAAAACATATC TCTTTCGGTCCATTTCGGAGCAGGTAAAAGGAAAACATATC < 41bp 1 0.459031485505257 1 0.802473068237305 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG13 ENSG00000101901 CDS Human protein_coding chrX:110951619 chrX:110951607 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_27736 0 0 1 0 1 ALG13 chrX:110951621 5'GT 110951621 Upstream 15bp
chr6 158492658 158492658 1 + G C LUAD 158492660 + 158492640 158492680 41 AGCCATCGACACAGTGAAGACGGGCATGGGGGGCAAGGCGG AGCCATCGACACAGTGAACACGGGCATGGGGGGCAAGGCGG < 41bp 1 0.756524171890116 1 0.748186409473419 experiment 0.486951656219768 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158492660 chr6:158492658 nonsynonymous SNV 0.989 5 19 hm5C_associated_SNPs_27737 0 0 1 0 1 SYNJ2 chr6:158492634 3'AG 158492634 Downstream 25bp
chr5 908512 908512 1 + A T LUAD 908507 + 908487 908527 41 CGCCCGAAATGCCTGCAGGGCGGGCACCGAGCCATCAGATG CGCCCGAAATGCCTGCAGGGCGGGCTCCGAGCCATCAGATG < 41bp 1 0.58281512586285 1 0.440504908561707 experiment 0.8343697482743 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908507 chr5:908512 nonsynonymous SNV 0.051 2 26 hm5C_associated_SNPs_27738 0 0 0 0 2 TRIP13 chr5:908470 3'AG 908470 Downstream 43bp
chr5 908512 908512 1 + A T LUAD 908507 + 908487 908527 41 CGCCCGAAATGCCTGCAGGGCGGGCACCGAGCCATCAGATG CGCCCGAAATGCCTGCAGGGCGGGCTCCGAGCCATCAGATG < 41bp 1 0.58281512586285 1 0.440504908561707 experiment 0.8343697482743 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908507 chr5:908512 nonsynonymous SNV 0.051 2 26 hm5C_associated_SNPs_27738 0 0 0 0 2 TRIP13 chr5:908576 5'GT 908576 Upstream 65bp
chr1 162557435 162557435 1 + A T LUAD 162557436 + 162557416 162557456 41 CCAACCATTTCTTCACTGTACCATTTCTGAGAGATGTTGTC CCAACCATTTCTTCACTGTTCCATTTCTGAGAGATGTTGTC < 41bp 1 0.0750849293515113 1 0.0750334560871124 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UAP1 ENSG00000117143 CDS Human protein_coding chr1:162557436 chr1:162557435 synonymous SNV . 0 20 hm5C_associated_SNPs_27739 0 0 1 0 1 UAP1 chr1:162557458 5'GT 162557458 Upstream 24bp
chr12 1517384 1517384 1 + C T LUAD 1517370 + 1517350 1517390 41 CGAGGATGACCACTTCAAATCCTCCCATTCCAATCAAACAA CGAGGATGACCACTTCAAATCCTCCCATTCCAATTAAACAA < 41bp 1 0.025899080483186 1 0.0870364010334015 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ERC1 ENSG00000082805 CDS Human protein_coding chr12:1517370 chr12:1517384 stopgain 1.000 1 35 hm5C_associated_SNPs_27740 0 0 1 0 2 ERC1 chr12:1517315 3'AG 1517315 Downstream 70bp
chr12 1517384 1517384 1 + C T LUAD 1517370 + 1517350 1517390 41 CGAGGATGACCACTTCAAATCCTCCCATTCCAATCAAACAA CGAGGATGACCACTTCAAATCCTCCCATTCCAATTAAACAA < 41bp 1 0.025899080483186 1 0.0870364010334015 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ERC1 ENSG00000082805 CDS Human protein_coding chr12:1517370 chr12:1517384 stopgain 1.000 1 35 hm5C_associated_SNPs_27740 0 0 1 0 2 ERC1 chr12:1517413 5'GT 1517413 Upstream 30bp
chr1 55524239 55524239 1 + C T LUAD 55524235 + 55524215 55524255 41 GCCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAG GCCTACACGGATGGCCACAGCCGTTGCCCGCTGCGCCCCAG < 41bp 1 0.199255158805523 1 0.094695508480072 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524235 chr1:55524239 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_27741 0 0 1 0 2 PCSK9 chr1:55524172 3'AG 55524172 Downstream 68bp
chr1 55524239 55524239 1 + C T LUAD 55524235 + 55524215 55524255 41 GCCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAG GCCTACACGGATGGCCACAGCCGTTGCCCGCTGCGCCCCAG < 41bp 1 0.199255158805523 1 0.094695508480072 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524235 chr1:55524239 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_27741 0 0 1 0 2 PCSK9 chr1:55524320 5'GT 55524320 Upstream 82bp
chr1 55524239 55524239 1 + C T LUAD 55524236 + 55524216 55524256 41 CCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAGA CCTACACGGATGGCCACAGCCGTTGCCCGCTGCGCCCCAGA < 41bp 1 0.319364159423831 1 0.0891713798046112 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524236 chr1:55524239 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_27742 0 0 1 0 2 PCSK9 chr1:55524172 3'AG 55524172 Downstream 68bp
chr1 55524239 55524239 1 + C T LUAD 55524236 + 55524216 55524256 41 CCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAGA CCTACACGGATGGCCACAGCCGTTGCCCGCTGCGCCCCAGA < 41bp 1 0.319364159423831 1 0.0891713798046112 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524236 chr1:55524239 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_27742 0 0 1 0 2 PCSK9 chr1:55524320 5'GT 55524320 Upstream 82bp
chr16 14970223 14970223 1 + C T LUAD 14970220 + 14970200 14970240 41 TTTCTTCCCCTCTTAGAAAGCTGCCCAGGGAAGCTGATCGA TTTCTTCCCCTCTTAGAAAGCTGTCCAGGGAAGCTGATCGA < 41bp 1 0.148250777326045 1 0.159753203392029 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14970220 chr16:14970223 synonymous SNV . 0 24 hm5C_associated_SNPs_27744 0 0 1 0 1 NOMO1 chr16:14970216 3'AG 14970216 Downstream 8bp
chr16 14970223 14970223 1 + C T LUAD 14970225 + 14970205 14970245 41 TCCCCTCTTAGAAAGCTGCCCAGGGAAGCTGATCGAGATCC TCCCCTCTTAGAAAGCTGTCCAGGGAAGCTGATCGAGATCC < 41bp 1 0.600656648792591 1 0.787354469299316 experiment 0.798686702414818 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14970225 chr16:14970223 synonymous SNV . 0 19 hm5C_associated_SNPs_27745 0 0 1 0 1 NOMO1 chr16:14970216 3'AG 14970216 Downstream 8bp
chrX 55029451 55029451 1 + C A LUAD 55029466 + 55029446 55029486 41 CCATGCGGACCCTGGGAGGCCTGAGCGGCTAGTCTTTAAGA CCATGAGGACCCTGGGAGGCCTGAGCGGCTAGTCTTTAAGA < 41bp 1 0.576437508249702 1 0.34744918346405 experiment 0.847124983500597 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control APEX2 ENSG00000169188 CDS Human protein_coding chrX:55029466 chrX:55029451 nonsynonymous SNV 0.383 4 6 hm5C_associated_SNPs_27746 0 0 1 0 2 APEX2 chrX:55029395 3'AG 55029395 Downstream 57bp
chrX 55029451 55029451 1 + C A LUAD 55029466 + 55029446 55029486 41 CCATGCGGACCCTGGGAGGCCTGAGCGGCTAGTCTTTAAGA CCATGAGGACCCTGGGAGGCCTGAGCGGCTAGTCTTTAAGA < 41bp 1 0.576437508249702 1 0.34744918346405 experiment 0.847124983500597 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control APEX2 ENSG00000169188 CDS Human protein_coding chrX:55029466 chrX:55029451 nonsynonymous SNV 0.383 4 6 hm5C_associated_SNPs_27746 0 0 1 0 2 APEX2 chrX:55029541 5'GT 55029541 Upstream 91bp
chr7 142458527 142458527 1 + C A LUAD 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGTGGTGGCTCCCTCATCAAAGAACAGTG < 41bp 1 0.260192125993864 1 0.239372044801712 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458527 nonsynonymous SNV 0.000 2 33 hm5C_associated_SNPs_27747 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 48bp
chr7 142458527 142458527 1 + C A LUAD 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGTGGTGGCTCCCTCATCAAAGAACAGTG < 41bp 1 0.260192125993864 1 0.239372044801712 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458527 nonsynonymous SNV 0.000 2 33 hm5C_associated_SNPs_27747 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 39bp
chr7 142458527 142458527 1 + C A LUAD 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGGTGGCTCCCTCATCAAAGAACAGTGGG < 41bp 1 0.0906228039022406 1 0.0445879995822906 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458527 nonsynonymous SNV 0.000 2 31 hm5C_associated_SNPs_27748 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 48bp
chr7 142458527 142458527 1 + C A LUAD 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGGTGGCTCCCTCATCAAAGAACAGTGGG < 41bp 1 0.0906228039022406 1 0.0445879995822906 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458527 nonsynonymous SNV 0.000 2 31 hm5C_associated_SNPs_27748 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 39bp
chr7 142458527 142458527 1 + C A LUAD 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGGTGGCTCCCTCATCAAAGAACAGTGGGT < 41bp 1 0.136504245314298 1 0.0988940596580505 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458527 nonsynonymous SNV 0.000 2 30 hm5C_associated_SNPs_27749 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 48bp
chr7 142458527 142458527 1 + C A LUAD 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGGTGGCTCCCTCATCAAAGAACAGTGGGT < 41bp 1 0.136504245314298 1 0.0988940596580505 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458527 nonsynonymous SNV 0.000 2 30 hm5C_associated_SNPs_27749 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 39bp
chr7 142458527 142458527 1 + C A LUAD 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGGTGGCTCCCTCATCAAAGAACAGTGGGTG < 41bp 1 0.394560944720945 1 0.23293274641037 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458527 nonsynonymous SNV 0.000 2 29 hm5C_associated_SNPs_27750 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 48bp
chr7 142458527 142458527 1 + C A LUAD 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGGTGGCTCCCTCATCAAAGAACAGTGGGTG < 41bp 1 0.394560944720945 1 0.23293274641037 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458527 nonsynonymous SNV 0.000 2 29 hm5C_associated_SNPs_27750 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 39bp
chr7 142458527 142458527 1 + C A LUAD 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGGTGGCTCCCTCATCAAAGAACAGTGGGTGGT < 41bp 1 0.518864545989826 1 0.681702375411987 experiment 0.962270908020348 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458527 nonsynonymous SNV 0.000 2 27 hm5C_associated_SNPs_27751 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 48bp
chr7 142458527 142458527 1 + C A LUAD 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGGTGGCTCCCTCATCAAAGAACAGTGGGTGGT < 41bp 1 0.518864545989826 1 0.681702375411987 experiment 0.962270908020348 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458527 nonsynonymous SNV 0.000 2 27 hm5C_associated_SNPs_27751 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 39bp
chr7 142458527 142458527 1 + C A LUAD 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGGTGGCTCCCTCATCAAAGAACAGTGGGTGGTATC < 41bp 1 0.649195123553726 1 0.876695036888123 experiment 0.701609752892548 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458527 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_27752 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 48bp
chr7 142458527 142458527 1 + C A LUAD 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGGTGGCTCCCTCATCAAAGAACAGTGGGTGGTATC < 41bp 1 0.649195123553726 1 0.876695036888123 experiment 0.701609752892548 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458527 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_27752 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 39bp
chr7 142458527 142458527 1 + C A LUAD 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGCTCCCTCATCAAAGAACAGTGGGTGGTATCAGCAGGC < 41bp 1 0.520913295508938 1 0.266944289207458 experiment 0.958173408982124 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458527 nonsynonymous SNV 0.000 2 17 hm5C_associated_SNPs_27753 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 48bp
chr7 142458527 142458527 1 + C A LUAD 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGCTCCCTCATCAAAGAACAGTGGGTGGTATCAGCAGGC < 41bp 1 0.520913295508938 1 0.266944289207458 experiment 0.958173408982124 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458527 nonsynonymous SNV 0.000 2 17 hm5C_associated_SNPs_27753 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 39bp
chr7 142458527 142458527 1 + C A LUAD 142458547 + 142458527 142458567 41 CGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT AGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT < 41bp 1 0.592404396433328 1 0.894213318824768 experiment 0.815191207133344 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458547 chr7:142458527 nonsynonymous SNV 0.000 2 1 hm5C_associated_SNPs_27754 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 48bp
chr7 142458527 142458527 1 + C A LUAD 142458547 + 142458527 142458567 41 CGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT AGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT < 41bp 1 0.592404396433328 1 0.894213318824768 experiment 0.815191207133344 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458547 chr7:142458527 nonsynonymous SNV 0.000 2 1 hm5C_associated_SNPs_27754 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 39bp
chr11 113078026 113078026 1 + C T LUAD 113078025 + 113078005 113078045 41 GCAGAATATTGTGAATGCCACCGCCAACCTCGGCCAGTCCG GCAGAATATTGTGAATGCCACTGCCAACCTCGGCCAGTCCG < 41bp 1 0.264876565643489 1 0.308107674121857 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113078025 chr11:113078026 synonymous SNV . 0 22 hm5C_associated_SNPs_27755 0 0 0 0 2 NCAM1 chr11:113077983 3'AG 113077983 Downstream 44bp
chr11 113078026 113078026 1 + C T LUAD 113078025 + 113078005 113078045 41 GCAGAATATTGTGAATGCCACCGCCAACCTCGGCCAGTCCG GCAGAATATTGTGAATGCCACTGCCAACCTCGGCCAGTCCG < 41bp 1 0.264876565643489 1 0.308107674121857 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113078025 chr11:113078026 synonymous SNV . 0 22 hm5C_associated_SNPs_27755 0 0 0 0 2 NCAM1 chr11:113078100 5'GT 113078100 Upstream 75bp
chr19 34818678 34818678 1 + A T LUAD 34818689 + 34818669 34818709 41 TTTCCAGGCATATAAGATAGCTCTGGAAAGCTTAGGACACT TTTCCAGGCTTATAAGATAGCTCTGGAAAGCTTAGGACACT < 41bp 1 0.221160909511812 1 0.195571899414062 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34818689 chr19:34818678 synonymous SNV . 0 10 hm5C_associated_SNPs_27756 0 0 0 0 2 KIAA0355 chr19:34818676 3'AG 34818676 Downstream 3bp
chr19 34818678 34818678 1 + A T LUAD 34818689 + 34818669 34818709 41 TTTCCAGGCATATAAGATAGCTCTGGAAAGCTTAGGACACT TTTCCAGGCTTATAAGATAGCTCTGGAAAGCTTAGGACACT < 41bp 1 0.221160909511812 1 0.195571899414062 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34818689 chr19:34818678 synonymous SNV . 0 10 hm5C_associated_SNPs_27756 0 0 0 0 2 KIAA0355 chr19:34818771 5'GT 34818771 Upstream 94bp
chr9 139747556 139747556 1 + G T LUAD 139747567 + 139747547 139747587 41 CCAGCAGCAGGGTCCTCAGGCTGGGCCTGGGTCCCCAACCA CCAGCAGCATGGTCCTCAGGCTGGGCCTGGGTCCCCAACCA < 41bp 1 0.761177803097882 1 0.668060302734375 experiment 0.477644393804237 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139747567 chr9:139747556 nonsynonymous SNV 0.006 1 10 hm5C_associated_SNPs_27757 0 0 1 0 1 MAMDC4 chr9:139747554 3'AG 139747554 Downstream 3bp
chr21 47929244 47929244 1 + C T LUAD 47929258 + 47929238 47929278 41 CGCCCTCCACTGAAGGAGTTCTTTGTGGATGATTTTGAGGA CGCCCTTCACTGAAGGAGTTCTTTGTGGATGATTTTGAGGA < 41bp 1 0.069513569529665 1 0.0918294489383698 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47929258 chr21:47929244 nonsynonymous SNV 0.980 4 7 hm5C_associated_SNPs_27759 0 0 1 0 2 DIP2A chr21:47929170 3'AG 47929170 Downstream 75bp
chr21 47929244 47929244 1 + C T LUAD 47929258 + 47929238 47929278 41 CGCCCTCCACTGAAGGAGTTCTTTGTGGATGATTTTGAGGA CGCCCTTCACTGAAGGAGTTCTTTGTGGATGATTTTGAGGA < 41bp 1 0.069513569529665 1 0.0918294489383698 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47929258 chr21:47929244 nonsynonymous SNV 0.980 4 7 hm5C_associated_SNPs_27759 0 0 1 0 2 DIP2A chr21:47929289 5'GT 47929289 Upstream 46bp
chr5 179151752 179151752 1 + G A LUAD 179151747 + 179151727 179151767 41 GAGAAGGAAGAGGAAAAGGACAAGGGAGATGAGGAGGAGGA GAGAAGGAAGAGGAAAAGGACAAGGAAGATGAGGAGGAGGA < 41bp 1 0.721274838735292 1 0.495620608329773 experiment 0.557450322529416 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151747 chr5:179151752 nonsynonymous SNV 0.915 0 26 hm5C_associated_SNPs_27760 0 0 1 0 2 CANX chr5:179151658 3'AG 179151658 Downstream 95bp
chr5 179151752 179151752 1 + G A LUAD 179151747 + 179151727 179151767 41 GAGAAGGAAGAGGAAAAGGACAAGGGAGATGAGGAGGAGGA GAGAAGGAAGAGGAAAAGGACAAGGAAGATGAGGAGGAGGA < 41bp 1 0.721274838735292 1 0.495620608329773 experiment 0.557450322529416 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151747 chr5:179151752 nonsynonymous SNV 0.915 0 26 hm5C_associated_SNPs_27760 0 0 1 0 2 CANX chr5:179151784 5'GT 179151784 Upstream 33bp
chr11 61898026 61898026 1 + A T LUAD 61898007 + 61897987 61898027 41 AGTGTTGTCCGCAGGGCGAGCAGAAGGCTTGCCAAGAAGAC AGTGTTGTCCGCAGGGCGAGCAGAAGGCTTGCCAAGAAGTC < 41bp 1 0.608081238781827 1 0.730804026126862 experiment 0.783837522436346 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61898007 chr11:61898026 nonsynonymous SNV 0.348 0 40 hm5C_associated_SNPs_27761 0 0 1 0 1 INCENP chr11:61898062 5'GT 61898062 Upstream 37bp
chr11 61898026 61898026 1 + A T LUAD 61898018 + 61897998 61898038 41 CAGGGCGAGCAGAAGGCTTGCCAAGAAGACTGCCGAAGAGC CAGGGCGAGCAGAAGGCTTGCCAAGAAGTCTGCCGAAGAGC < 41bp 1 0.158487807589496 1 0.136153399944305 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61898018 chr11:61898026 nonsynonymous SNV 0.348 0 29 hm5C_associated_SNPs_27762 0 0 1 0 1 INCENP chr11:61898062 5'GT 61898062 Upstream 37bp
chr22 30415499 30415499 1 + G C LUAD 30415519 + 30415499 30415539 41 GACCACAGCCTGTGACAACACAGTGCCTCTGGCCAGCCGGC CACCACAGCCTGTGACAACACAGTGCCTCTGGCCAGCCGGC < 41bp 1 0.327357170549679 1 0.314727127552032 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTMR3 ENSG00000100330 CDS Human protein_coding chr22:30415519 chr22:30415499 synonymous SNV . 0 1 hm5C_associated_SNPs_27769 0 0 1 0 1 MTMR3 chr22:30415469 3'AG 30415469 Downstream 31bp
chr11 113078005 113078005 1 + G A LUAD 113078025 + 113078005 113078045 41 GCAGAATATTGTGAATGCCACCGCCAACCTCGGCCAGTCCG ACAGAATATTGTGAATGCCACCGCCAACCTCGGCCAGTCCG < 41bp 1 0.103434739955246 1 0.131742924451828 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113078025 chr11:113078005 synonymous SNV . 0 1 hm5C_associated_SNPs_27770 0 0 0 0 2 NCAM1 chr11:113077983 3'AG 113077983 Downstream 23bp
chr11 113078005 113078005 1 + G A LUAD 113078025 + 113078005 113078045 41 GCAGAATATTGTGAATGCCACCGCCAACCTCGGCCAGTCCG ACAGAATATTGTGAATGCCACCGCCAACCTCGGCCAGTCCG < 41bp 1 0.103434739955246 1 0.131742924451828 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113078025 chr11:113078005 synonymous SNV . 0 1 hm5C_associated_SNPs_27770 0 0 0 0 2 NCAM1 chr11:113078100 5'GT 113078100 Upstream 96bp
chr12 112915756 112915756 1 + G A LUAD 112915765 + 112915745 112915785 41 GACTTTTGGCGGATGGTGTTCCAAGAAAACTCCCGAGTGAT GACTTTTGGCGAATGGTGTTCCAAGAAAACTCCCGAGTGAT < 41bp 1 0.224569946697109 1 0.312247276306152 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915765 chr12:112915756 synonymous SNV . 0 12 hm5C_associated_SNPs_27771 0 0 1 0 2 PTPN11 chr12:112915661 3'AG 112915661 Downstream 96bp
chr12 112915756 112915756 1 + G A LUAD 112915765 + 112915745 112915785 41 GACTTTTGGCGGATGGTGTTCCAAGAAAACTCCCGAGTGAT GACTTTTGGCGAATGGTGTTCCAAGAAAACTCCCGAGTGAT < 41bp 1 0.224569946697109 1 0.312247276306152 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915765 chr12:112915756 synonymous SNV . 0 12 hm5C_associated_SNPs_27771 0 0 1 0 2 PTPN11 chr12:112915819 5'GT 112915819 Upstream 64bp
chr12 112915756 112915756 1 + G A LUAD 112915766 + 112915746 112915786 41 ACTTTTGGCGGATGGTGTTCCAAGAAAACTCCCGAGTGATT ACTTTTGGCGAATGGTGTTCCAAGAAAACTCCCGAGTGATT < 41bp 1 0.766694616651458 1 0.332666754722595 experiment 0.466610766697084 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915766 chr12:112915756 synonymous SNV . 0 11 hm5C_associated_SNPs_27772 0 0 1 0 2 PTPN11 chr12:112915661 3'AG 112915661 Downstream 96bp
chr12 112915756 112915756 1 + G A LUAD 112915766 + 112915746 112915786 41 ACTTTTGGCGGATGGTGTTCCAAGAAAACTCCCGAGTGATT ACTTTTGGCGAATGGTGTTCCAAGAAAACTCCCGAGTGATT < 41bp 1 0.766694616651458 1 0.332666754722595 experiment 0.466610766697084 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915766 chr12:112915756 synonymous SNV . 0 11 hm5C_associated_SNPs_27772 0 0 1 0 2 PTPN11 chr12:112915819 5'GT 112915819 Upstream 64bp
chr8 107754476 107754476 1 + A G LUAD 107754474 + 107754454 107754494 41 TTGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC TTGGTGCGTTAGCATCTGAGCCGCTGAAAGTGAGTGATGGC < 41bp 1 0.102801793995433 1 0.0718809366226196 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754474 chr8:107754476 synonymous SNV . 0 23 hm5C_associated_SNPs_27773 0 0 0 1 2 OXR1 chr8:107754450 3'AG 107754450 Downstream 27bp
chr8 107754476 107754476 1 + A G LUAD 107754474 + 107754454 107754494 41 TTGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC TTGGTGCGTTAGCATCTGAGCCGCTGAAAGTGAGTGATGGC < 41bp 1 0.102801793995433 1 0.0718809366226196 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754474 chr8:107754476 synonymous SNV . 0 23 hm5C_associated_SNPs_27773 0 0 0 1 2 OXR1 chr8:107754545 5'GT 107754545 Upstream 70bp
chr8 107754476 107754476 1 + A G LUAD 107754475 + 107754455 107754495 41 TGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT TGGTGCGTTAGCATCTGAGCCGCTGAAAGTGAGTGATGGCT < 41bp 1 0.186195380529942 1 0.148971855640411 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754475 chr8:107754476 synonymous SNV . 0 22 hm5C_associated_SNPs_27774 0 0 0 1 2 OXR1 chr8:107754450 3'AG 107754450 Downstream 27bp
chr8 107754476 107754476 1 + A G LUAD 107754475 + 107754455 107754495 41 TGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT TGGTGCGTTAGCATCTGAGCCGCTGAAAGTGAGTGATGGCT < 41bp 1 0.186195380529942 1 0.148971855640411 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754475 chr8:107754476 synonymous SNV . 0 22 hm5C_associated_SNPs_27774 0 0 0 1 2 OXR1 chr8:107754545 5'GT 107754545 Upstream 70bp
chr3 15298613 15298613 1 - C T LUAD 15298607 - 15298587 15298627 41 AACTTAGTGGCCTCGGAGGCCTTTGAAGATGACAGCTGTAG AACTTAGTGGCCTCAGAGGCCTTTGAAGATGACAGCTGTAG < 41bp 1 0.0977744665777474 1 0.0564142465591431 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SH3BP5 ENSG00000131370 CDS Human protein_coding chr3:15298607 chr3:15298613 synonymous SNV . 0 15 hm5C_associated_SNPs_27775 0 0 0 0 1 SH3BP5 chr3:15298620 3'AG 15298620 Downstream 8bp
chrX 153677103 153677103 1 + G C LUAD 153677085 + 153677065 153677105 41 CTGCGGCAGGAGTGGGAAGCCAAGCAGGAGAAGATCAAGAG CTGCGGCAGGAGTGGGAAGCCAAGCAGGAGAAGATCAACAG < 41bp 1 0.718501695587299 1 0.745307683944702 experiment 0.562996608825403 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout FAM50A ENSG00000071859 CDS Human protein_coding chrX:153677085 chrX:153677103 nonsynonymous SNV 0.998 4 39 hm5C_associated_SNPs_27777 0 0 1 0 1 FAM50A chrX:153677038 3'AG 153677038 Downstream 66bp
chr1 32623006 32623006 1 + G A LUAD 32623004 + 32622984 32623024 41 TTTCTGATGATTCTGACCTGCAGTTAGCAACCACACAGAAA TTTCTGATGATTCTGACCTGCAATTAGCAACCACACAGAAA < 41bp 1 0.0903376733208552 1 0.0394472479820251 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32623004 chr1:32623006 synonymous SNV . 0 23 hm5C_associated_SNPs_27789 0 0 1 0 2 KPNA6 chr1:32622947 3'AG 32622947 Downstream 60bp
chr1 32623006 32623006 1 + G A LUAD 32623004 + 32622984 32623024 41 TTTCTGATGATTCTGACCTGCAGTTAGCAACCACACAGAAA TTTCTGATGATTCTGACCTGCAATTAGCAACCACACAGAAA < 41bp 1 0.0903376733208552 1 0.0394472479820251 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32623004 chr1:32623006 synonymous SNV . 0 23 hm5C_associated_SNPs_27789 0 0 1 0 2 KPNA6 chr1:32623046 5'GT 32623046 Upstream 41bp
chr15 25222171 25222171 1 + C A LUAD 25222166 + 25222146 25222186 41 TGTCCGAGGAGTTGGGGGACCATCCCAGCAGGTGAGGAACC TGTCCGAGGAGTTGGGGGACCATCCAAGCAGGTGAGGAACC < 41bp 1 0.154255414447056 1 0.302614748477936 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25222166 chr15:25222171 nonsynonymous SNV 0.987 2 26 hm5C_associated_SNPs_27790 0 0 1 2 1 SNRPN chr15:25222176 5'GT 25222176 Upstream 6bp
chr7 150764060 150764060 1 + G T LUAD 150764061 + 150764041 150764081 41 ACCTCGGGCCCGACCCCGGGCCCCCCACAAGCCCCATGAGG ACCTCGGGCCCGACCCCGGTCCCCCCACAAGCCCCATGAGG < 41bp 1 0.064686191691985 1 0.118854582309723 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150764061 chr7:150764060 nonsynonymous SNV 0.994 0 20 hm5C_associated_SNPs_27791 0 0 1 0 1 SLC4A2 chr7:150764080 5'GT 150764080 Upstream 21bp
chr7 150764060 150764060 1 + G T LUAD 150764062 + 150764042 150764082 41 CCTCGGGCCCGACCCCGGGCCCCCCACAAGCCCCATGAGGT CCTCGGGCCCGACCCCGGTCCCCCCACAAGCCCCATGAGGT < 41bp 1 0.0454448409725478 1 0.0907803475856781 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150764062 chr7:150764060 nonsynonymous SNV 0.994 0 19 hm5C_associated_SNPs_27792 0 0 1 0 1 SLC4A2 chr7:150764080 5'GT 150764080 Upstream 21bp
chr7 150764060 150764060 1 + G T LUAD 150764063 + 150764043 150764083 41 CTCGGGCCCGACCCCGGGCCCCCCACAAGCCCCATGAGGTA CTCGGGCCCGACCCCGGTCCCCCCACAAGCCCCATGAGGTA < 41bp 1 0.365779071106711 1 0.194685608148575 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150764063 chr7:150764060 nonsynonymous SNV 0.994 0 18 hm5C_associated_SNPs_27793 0 0 1 0 1 SLC4A2 chr7:150764080 5'GT 150764080 Upstream 21bp
chr1 154317158 154317158 1 + G T LUAD 154317162 + 154317142 154317182 41 TCATCCCGCTCCGTAGGCAACGGCTTCACCTATCAGGACAA TCATCCCGCTCCGTAGTCAACGGCTTCACCTATCAGGACAA < 41bp 1 0.424433581074196 1 0.293994426727295 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154317162 chr1:154317158 nonsynonymous SNV 0.229 0 17 hm5C_associated_SNPs_27794 0 0 1 0 1 ATP8B2 chr1:154317117 3'AG 154317117 Downstream 42bp
chr10 64148220 64148220 1 + G A LUAD 64148225 + 64148205 64148245 41 TTCAAGGGAAAGCCCGGCTCCAGGACTTTATTGAGAATCTG TTCAAGGGAAAGCCCAGCTCCAGGACTTTATTGAGAATCTG < 41bp 1 0.751849814752195 1 0.256550282239914 experiment 0.496300370495609 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF365 ENSG00000138311 CDS Human protein_coding chr10:64148225 chr10:64148220 nonsynonymous SNV 0.992 2 16 hm5C_associated_SNPs_27795 0 0 0 0 1 ZNF365 chr10:64148155 3'AG 64148155 Downstream 66bp
chr3 51981799 51981799 1 + C G LUAD 51981779 + 51981759 51981799 41 TTGGCATGAAGTGTGGGGCCCACCATGTCGGCTACATGTTC TTGGCATGAAGTGTGGGGCCCACCATGTCGGCTACATGTTG < 41bp 1 0.595157359235199 1 0.158250272274017 experiment 0.809685281529602 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PARP3 ENSG00000041880 CDS Human protein_coding chr3:51981779 chr3:51981799 nonsynonymous SNV 0.996 3 41 hm5C_associated_SNPs_27796 0 0 0 0 1 PARP3 chr3:51981756 3'AG 51981756 Downstream 44bp
chr1 161179353 161179353 1 + C T LUAD 161179358 + 161179338 161179378 41 CTTGGGGCCATGACCCCTTTCTTCTGGCTGTTTGAAGAAAG CTTGGGGCCATGACCTCTTTCTTCTGGCTGTTTGAAGAAAG < 41bp 1 0.293200239662324 1 0.126297801733017 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161179358 chr1:161179353 nonsynonymous SNV 0.995 5 16 hm5C_associated_SNPs_27797 0 0 1 0 2 NDUFS2 chr1:161179273 3'AG 161179273 Downstream 81bp
chr1 161179353 161179353 1 + C T LUAD 161179358 + 161179338 161179378 41 CTTGGGGCCATGACCCCTTTCTTCTGGCTGTTTGAAGAAAG CTTGGGGCCATGACCTCTTTCTTCTGGCTGTTTGAAGAAAG < 41bp 1 0.293200239662324 1 0.126297801733017 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161179358 chr1:161179353 nonsynonymous SNV 0.995 5 16 hm5C_associated_SNPs_27797 0 0 1 0 2 NDUFS2 chr1:161179385 5'GT 161179385 Upstream 33bp
chr4 144442691 144442691 1 + A T LUAD 144442679 + 144442659 144442699 41 TCAGAAGACTCCAACTTCACCTTTGAAGATGAAACCAGGGC TCAGAAGACTCCAACTTCACCTTTGAAGATGATACCAGGGC < 41bp 1 0.142416528947324 1 0.063342809677124 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SMARCA5 ENSG00000153147 CDS Human protein_coding chr4:144442679 chr4:144442691 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_27799 0 0 1 0 1 SMARCA5 chr4:144442748 5'GT 144442748 Upstream 58bp
chr13 111154090 111154090 1 + C T LUAD 111154071 + 111154051 111154091 41 GGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGGCA GGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGGTA < 41bp 1 0.00830246901075676 1 0.318744242191315 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111154071 chr13:111154090 nonsynonymous SNV 0.051 1 40 hm5C_associated_SNPs_27800 0 0 0 0 2 COL4A2 chr13:111154015 3'AG 111154015 Downstream 76bp
chr13 111154090 111154090 1 + C T LUAD 111154071 + 111154051 111154091 41 GGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGGCA GGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGGTA < 41bp 1 0.00830246901075676 1 0.318744242191315 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111154071 chr13:111154090 nonsynonymous SNV 0.051 1 40 hm5C_associated_SNPs_27800 0 0 0 0 2 COL4A2 chr13:111154131 5'GT 111154131 Upstream 42bp
chr19 49993733 49993733 1 + G A LUAD 49993749 + 49993729 49993769 41 TAGTGAAGTACCTGGCTTTCCTCCGCAAGCGGATGAACACC TAGTAAAGTACCTGGCTTTCCTCCGCAAGCGGATGAACACC < 41bp 1 0.788278231557913 1 0.425446689128876 experiment 0.423443536884175 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993749 chr19:49993733 synonymous SNV . 0 5 hm5C_associated_SNPs_27801 0 0 1 0 1 RPL13A chr19:49993732 3'AG 49993732 Downstream 2bp
chr15 99459945 99459945 1 + G C LUAD 99459934 + 99459914 99459954 41 CAGGAAGTATGCCGACGGCACCATCGACATTGAGGAGGTCA CAGGAAGTATGCCGACGGCACCATCGACATTCAGGAGGTCA < 41bp 1 0.0105251311648748 1 0.0782961249351501 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IGF1R ENSG00000140443 CDS Human protein_coding chr15:99459934 chr15:99459945 nonsynonymous SNV 0.559 2 32 hm5C_associated_SNPs_27804 0 0 1 0 1 IGF1R chr15:99459901 3'AG 99459901 Downstream 45bp
chr2 71795348 71795348 1 + C A LUAD 71795352 + 71795332 71795372 41 GGGAACTGGGGCACAACGGGCCTCACCTACCCCAAGTTTTC GGGAACTGGGGCACAAAGGGCCTCACCTACCCCAAGTTTTC < 41bp 1 0.124569001461698 1 0.0813909471035004 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71795352 chr2:71795348 nonsynonymous SNV 0.992 4 17 hm5C_associated_SNPs_27807 0 0 0 0 1 DYSF chr2:71795302 3'AG 71795302 Downstream 47bp
chr10 120867611 120867611 1 + C G LUAD 120867616 + 120867596 120867636 41 CCCTTTGTCTTTGGTCAGTACAGAAGAACATGGTTTTATAT CCCTTTGTCTTTGGTGAGTACAGAAGAACATGGTTTTATAT < 41bp 1 0.688907167595683 1 0.497815042734146 experiment 0.622185664808634 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM45A ENSG00000119979 CDS Human protein_coding chr10:120867616 chr10:120867611 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_27808 0 0 0 0 1 FAM45A chr10:120867676 5'GT 120867676 Upstream 66bp
chrX 77373665 77373665 1 + C A LUAD 77373646 + 77373626 77373666 41 CTTGGAGAGCCCAGAGCGACCCTTCCTGGCCATCCTGGGCG CTTGGAGAGCCCAGAGCGACCCTTCCTGGCCATCCTGGGAG < 41bp 1 0.0783190989373745 1 0.052564412355423 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77373646 chrX:77373665 synonymous SNV . 0 40 hm5C_associated_SNPs_27809 0 0 1 0 1 PGK1 chrX:77373667 5'GT 77373667 Upstream 3bp
chr4 52740465 52740465 1 + C G LUAD 52740449 + 52740429 52740469 41 TTTTGTAGGAAGTCTGCGGTCTTGCAGTTCTTCAGACTGCT TTTTGTAGGAAGTCTGCGGTCTTGCAGTTCTTCAGAGTGCT < 41bp 1 0.233779261945487 1 0.0648183226585388 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DCUN1D4 ENSG00000109184 CDS Human protein_coding chr4:52740449 chr4:52740465 nonsynonymous SNV 0.998 1 37 hm5C_associated_SNPs_27811 0 0 1 1 2 DCUN1D4 chr4:52740437 3'AG 52740437 Downstream 29bp
chr4 52740465 52740465 1 + C G LUAD 52740449 + 52740429 52740469 41 TTTTGTAGGAAGTCTGCGGTCTTGCAGTTCTTCAGACTGCT TTTTGTAGGAAGTCTGCGGTCTTGCAGTTCTTCAGAGTGCT < 41bp 1 0.233779261945487 1 0.0648183226585388 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DCUN1D4 ENSG00000109184 CDS Human protein_coding chr4:52740449 chr4:52740465 nonsynonymous SNV 0.998 1 37 hm5C_associated_SNPs_27811 0 0 1 1 2 DCUN1D4 chr4:52740551 5'GT 52740551 Upstream 87bp
chr7 142459634 142459634 1 + G A LUAD 142459625 + 142459605 142459645 41 ATGCCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGG ATGCCTGCCCTGCCCATCAGCCGCATCCAAGTGAGACTGGG < 41bp 1 0.498776813107735 1 0.297227442264557 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459625 chr7:142459634 synonymous SNV . 0 30 hm5C_associated_SNPs_27812 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 10bp
chr7 142459634 142459634 1 + G A LUAD 142459626 + 142459606 142459646 41 TGCCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGA TGCCTGCCCTGCCCATCAGCCGCATCCAAGTGAGACTGGGA < 41bp 1 0.313428124324416 1 0.211621016263962 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459626 chr7:142459634 synonymous SNV . 0 29 hm5C_associated_SNPs_27813 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 10bp
chr7 142459634 142459634 1 + G A LUAD 142459628 + 142459608 142459648 41 CCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGA CCTGCCCTGCCCATCAGCCGCATCCAAGTGAGACTGGGAGA < 41bp 1 0.262287596169463 1 0.174068331718445 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459628 chr7:142459634 synonymous SNV . 0 27 hm5C_associated_SNPs_27814 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 10bp
chr7 142459634 142459634 1 + G A LUAD 142459631 + 142459611 142459651 41 GCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGAGCA GCCCTGCCCATCAGCCGCATCCAAGTGAGACTGGGAGAGCA < 41bp 1 0.3489157007446 1 0.702178001403809 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459631 chr7:142459634 synonymous SNV . 0 24 hm5C_associated_SNPs_27815 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 10bp
chr7 142459634 142459634 1 + G A LUAD 142459632 + 142459612 142459652 41 CCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGAGCAC CCCTGCCCATCAGCCGCATCCAAGTGAGACTGGGAGAGCAC < 41bp 1 0.730418987705965 1 0.600119948387146 experiment 0.53916202458807 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459632 chr7:142459634 synonymous SNV . 0 23 hm5C_associated_SNPs_27816 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 10bp
chr2 216197222 216197222 1 + G T LUAD 216197204 + 216197184 216197224 41 TTTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCC TTTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCATCC < 41bp 1 0.0492299759286358 1 0.0804571807384491 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216197204 chr2:216197222 nonsynonymous SNV 0.997 4 39 hm5C_associated_SNPs_27817 0 0 1 0 1 ATIC chr2:216197230 5'GT 216197230 Upstream 9bp
chr2 216197222 216197222 1 + G T LUAD 216197205 + 216197185 216197225 41 TTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCCC TTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCATCCC < 41bp 1 0.345818310739225 1 0.167264372110367 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216197205 chr2:216197222 nonsynonymous SNV 0.997 4 38 hm5C_associated_SNPs_27818 0 0 1 0 1 ATIC chr2:216197230 5'GT 216197230 Upstream 9bp
chr12 50834321 50834321 1 + G T LUAD 50834317 + 50834297 50834337 41 TATATCACTTTCCAGTCAGACACAGATGCACAACAGGTAAG TATATCACTTTCCAGTCAGACACATATGCACAACAGGTAAG < 41bp 1 0.374805813947963 1 0.238812416791916 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LARP4 ENSG00000161813 CDS Human protein_coding chr12:50834317 chr12:50834321 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_27819 0 0 1 0 2 LARP4 chr12:50834222 3'AG 50834222 Downstream 100bp
chr12 50834321 50834321 1 + G T LUAD 50834317 + 50834297 50834337 41 TATATCACTTTCCAGTCAGACACAGATGCACAACAGGTAAG TATATCACTTTCCAGTCAGACACATATGCACAACAGGTAAG < 41bp 1 0.374805813947963 1 0.238812416791916 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LARP4 ENSG00000161813 CDS Human protein_coding chr12:50834317 chr12:50834321 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_27819 0 0 1 0 2 LARP4 chr12:50834332 5'GT 50834332 Upstream 12bp
chr1 151237896 151237896 1 + C T LUAD 151237878 + 151237858 151237898 41 TTTCCTCCCCAGGAGGTGAACACAGAAAAGCTGACAGCCTT TTTCCTCCCCAGGAGGTGAACACAGAAAAGCTGACAGCTTT < 41bp 1 0.620627334767479 1 0.381638139486313 experiment 0.758745330465042 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151237878 chr1:151237896 synonymous SNV . 0 39 hm5C_associated_SNPs_27830 0 0 0 0 1 PSMD4 chr1:151237870 3'AG 151237870 Downstream 27bp
chr16 46960903 46960903 1 + G A LUAD 46960906 + 46960886 46960926 41 AGACTGGCATCTGTGTCGTGCCCGGCAGTGGCTTTGGGCAG AGACTGGCATCTGTGTCATGCCCGGCAGTGGCTTTGGGCAG < 41bp 1 0.440644537985526 1 0.131890505552292 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPT2 ENSG00000166123 CDS Human protein_coding chr16:46960906 chr16:46960903 nonsynonymous SNV 0.852 4 18 hm5C_associated_SNPs_27831 0 0 1 0 2 GPT2 chr16:46960837 3'AG 46960837 Downstream 67bp
chr16 46960903 46960903 1 + G A LUAD 46960906 + 46960886 46960926 41 AGACTGGCATCTGTGTCGTGCCCGGCAGTGGCTTTGGGCAG AGACTGGCATCTGTGTCATGCCCGGCAGTGGCTTTGGGCAG < 41bp 1 0.440644537985526 1 0.131890505552292 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPT2 ENSG00000166123 CDS Human protein_coding chr16:46960906 chr16:46960903 nonsynonymous SNV 0.852 4 18 hm5C_associated_SNPs_27831 0 0 1 0 2 GPT2 chr16:46960949 5'GT 46960949 Upstream 47bp
chr1 183502906 183502906 1 + A G LUAD 183502902 + 183502882 183502922 41 CCTCTTCCAGCAGTCAAGGTCTCCATGGACTGGCTAAGACT CCTCTTCCAGCAGTCAAGGTCTCCGTGGACTGGCTAAGACT < 41bp 1 0.637375408889937 1 0.911670506000519 experiment 0.725249182220126 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SMG7 ENSG00000116698 CDS Human protein_coding chr1:183502902 chr1:183502906 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_27832 0 0 1 0 1 SMG7 chr1:183502967 5'GT 183502967 Upstream 62bp
chr7 142460308 142460308 1 + C A LUAD 142460289 + 142460269 142460309 41 CTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCT CTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCAT < 41bp 1 0.137329047550123 1 0.263428747653961 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460289 chr7:142460308 nonsynonymous SNV 0.028 5 40 hm5C_associated_SNPs_27844 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 27bp
chr7 142460308 142460308 1 + C A LUAD 142460290 + 142460270 142460310 41 TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTG TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCATG < 41bp 1 0.348597469688818 1 0.313579827547073 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460290 chr7:142460308 nonsynonymous SNV 0.028 5 39 hm5C_associated_SNPs_27845 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 27bp
chr7 142460308 142460308 1 + C A LUAD 142460291 + 142460271 142460311 41 GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGG GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCATGG < 41bp 1 0.424543525131812 1 0.341379880905151 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460291 chr7:142460308 nonsynonymous SNV 0.028 5 38 hm5C_associated_SNPs_27846 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 27bp
chr7 142460308 142460308 1 + C A LUAD 142460295 + 142460275 142460315 41 CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGC CTCACAGCCGACTACCCAGACGAGCTGCAGTGCATGGATGC < 41bp 1 0.335707316450229 1 0.411076724529266 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460295 chr7:142460308 nonsynonymous SNV 0.028 5 34 hm5C_associated_SNPs_27847 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 27bp
chr7 142460308 142460308 1 + C A LUAD 142460299 + 142460279 142460319 41 CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT CAGCCGACTACCCAGACGAGCTGCAGTGCATGGATGCTCCT < 41bp 1 0.65855889590216 1 0.232142150402069 experiment 0.682882208195681 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460299 chr7:142460308 nonsynonymous SNV 0.028 5 30 hm5C_associated_SNPs_27848 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 27bp
chr7 142460308 142460308 1 + C A LUAD 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGACGAGCTGCAGTGCATGGATGCTCCTGTG < 41bp 1 0.312817481658518 1 0.130382061004639 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460308 nonsynonymous SNV 0.028 5 27 hm5C_associated_SNPs_27849 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 27bp
chr7 142460308 142460308 1 + C A LUAD 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGCATGGATGCTCCTGTGCTGAG < 41bp 1 0.466975517697647 1 0.16638508439064 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460308 nonsynonymous SNV 0.028 5 22 hm5C_associated_SNPs_27850 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 27bp
chr7 142460308 142460308 1 + C A LUAD 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCATGGATGCTCCTGTGCTGAGCCAGGCTA < 41bp 1 0.418166233970065 1 0.130096703767776 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460308 nonsynonymous SNV 0.028 5 14 hm5C_associated_SNPs_27851 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 27bp
chr7 142460308 142460308 1 + C A LUAD 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCATGGATGCTCCTGTGCTGAGCCAGGCTAAG < 41bp 1 0.193918717738242 1 0.116748154163361 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460308 nonsynonymous SNV 0.028 5 12 hm5C_associated_SNPs_27852 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 27bp
chr7 142460308 142460308 1 + C A LUAD 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCATGGATGCTCCTGTGCTGAGCCAGGCTAAGT < 41bp 1 0.477938198733859 1 0.174109756946564 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460308 nonsynonymous SNV 0.028 5 11 hm5C_associated_SNPs_27853 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 27bp
chr7 142460308 142460308 1 + C A LUAD 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCATGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA < 41bp 1 0.52307300048656 1 0.0483902990818024 experiment 0.95385399902688 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460308 nonsynonymous SNV 0.028 5 6 hm5C_associated_SNPs_27854 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 27bp
chr7 142460308 142460308 1 + C A LUAD 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC ATGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC < 41bp 1 0.368027615530965 1 0.350231826305389 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460308 nonsynonymous SNV 0.028 5 1 hm5C_associated_SNPs_27855 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 27bp
chr22 29678498 29678498 1 + G A LUAD 29678503 + 29678483 29678523 41 CCCAGGTACCTGGGAGCTACCCCATGCAGCCAGTCACTGCA CCCAGGTACCTGGGAACTACCCCATGCAGCCAGTCACTGCA < 41bp 1 0.381112836306496 1 0.369398057460785 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29678503 chr22:29678498 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_27858 0 0 1 0 1 EWSR1 chr22:29678546 5'GT 29678546 Upstream 49bp
chr12 69044230 69044230 1 + A T LUAD 69044226 + 69044206 69044246 41 TGTAGAAAAATACGATCCTACGATAGAAGATTCTTATAGAA TGTAGAAAAATACGATCCTACGATTGAAGATTCTTATAGAA < 41bp 1 0.187077424104063 1 0.100837528705597 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAP1B ENSG00000127314 CDS Human protein_coding chr12:69044226 chr12:69044230 synonymous SNV . 0 25 hm5C_associated_SNPs_27859 0 0 0 0 2 RAP1B chr12:69044180 3'AG 69044180 Downstream 51bp
chr12 69044230 69044230 1 + A T LUAD 69044226 + 69044206 69044246 41 TGTAGAAAAATACGATCCTACGATAGAAGATTCTTATAGAA TGTAGAAAAATACGATCCTACGATTGAAGATTCTTATAGAA < 41bp 1 0.187077424104063 1 0.100837528705597 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAP1B ENSG00000127314 CDS Human protein_coding chr12:69044226 chr12:69044230 synonymous SNV . 0 25 hm5C_associated_SNPs_27859 0 0 0 0 2 RAP1B chr12:69044248 5'GT 69044248 Upstream 19bp
chr11 122817441 122817441 1 + G T LUAD 122817446 + 122817426 122817466 41 AGCCGTAGCAATTCTGAAGGCTATCTGTTTCAACTGGAAAA AGCCGTAGCAATTCTTAAGGCTATCTGTTTCAACTGGAAAA < 41bp 1 0.0970148988781705 1 0.0526951551437378 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122817446 chr11:122817441 stopgain 0.993 1 16 hm5C_associated_SNPs_27861 0 0 0 0 1 C11orf63 chr11:122817500 5'GT 122817500 Upstream 60bp
chr6 24423250 24423250 1 + G A LUAD 24423252 + 24423232 24423272 41 TGCTTTCATTCCTTGGACGACAGCTAGAAGCTCCATTGCCT TGCTTTCATTCCTTGGACAACAGCTAGAAGCTCCATTGCCT < 41bp 1 0.544319083734345 1 0.0709159374237061 experiment 0.911361832531309 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRS2 ENSG00000124532 CDS Human protein_coding chr6:24423252 chr6:24423250 nonsynonymous SNV 0.979 3 19 hm5C_associated_SNPs_27862 0 0 1 0 2 MRS2 chr6:24423165 3'AG 24423165 Downstream 86bp
chr6 24423250 24423250 1 + G A LUAD 24423252 + 24423232 24423272 41 TGCTTTCATTCCTTGGACGACAGCTAGAAGCTCCATTGCCT TGCTTTCATTCCTTGGACAACAGCTAGAAGCTCCATTGCCT < 41bp 1 0.544319083734345 1 0.0709159374237061 experiment 0.911361832531309 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRS2 ENSG00000124532 CDS Human protein_coding chr6:24423252 chr6:24423250 nonsynonymous SNV 0.979 3 19 hm5C_associated_SNPs_27862 0 0 1 0 2 MRS2 chr6:24423278 5'GT 24423278 Upstream 29bp
chr3 49060179 49060179 1 + C T LUAD 49060174 + 49060154 49060194 41 TCACCGAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC TCACCGAAGACAGCTTTTCCCTCTTTTGGTTGCTGGAGCCC < 41bp 1 0.44821467824457 1 0.439153492450714 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060174 chr3:49060179 synonymous SNV . 0 26 hm5C_associated_SNPs_27863 0 0 1 0 2 NDUFAF3 chr3:49060135 3'AG 49060135 Downstream 45bp
chr3 49060179 49060179 1 + C T LUAD 49060174 + 49060154 49060194 41 TCACCGAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC TCACCGAAGACAGCTTTTCCCTCTTTTGGTTGCTGGAGCCC < 41bp 1 0.44821467824457 1 0.439153492450714 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060174 chr3:49060179 synonymous SNV . 0 26 hm5C_associated_SNPs_27863 0 0 1 0 2 NDUFAF3 chr3:49060201 5'GT 49060201 Upstream 23bp
chr19 50027842 50027842 1 + A G LUAD 50027862 + 50027842 50027882 41 ACCCTCCGGAGCTGCAACTTCGGTTCCTGCGGAATGGGCTG GCCCTCCGGAGCTGCAACTTCGGTTCCTGCGGAATGGGCTG < 41bp 1 0.525964403078459 1 0.707493603229523 experiment 0.948071193843083 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCGRT ENSG00000104870 CDS Human protein_coding chr19:50027862 chr19:50027842 nonsynonymous SNV 0.994 3 1 hm5C_associated_SNPs_27864 0 0 1 1 1 FCGRT chr19:50027764 3'AG 50027764 Downstream 79bp
chrX 153780355 153780355 1 + C A LUAD 153780337 + 153780317 153780357 41 GGGAAGCCAGCCATGCTGCACCTGCCTTCAGAACAGGGCGC GGGAAGCCAGCCATGCTGCACCTGCCTTCAGAACAGGGAGC < 41bp 1 0.0632389968665864 1 0.0816952884197235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IKBKG ENSG00000073009 CDS Human other chrX:153780337 chrX:153780355 synonymous SNV . 0 39 hm5C_associated_SNPs_27867 0 0 1 0 1 IKBKG chrX:153780404 5'GT 153780404 Upstream 50bp
chr1 145663206 145663206 1 + C G LUAD 145663218 + 145663198 145663238 41 TTTAGACCCTTTCTAAGTAGCAGTCCACTGGACCAAGATAA TTTAGACCGTTTCTAAGTAGCAGTCCACTGGACCAAGATAA < 41bp 1 0.0725401530562562 1 0.159899920225143 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF115 ENSG00000121848 CDS Human other chr1:145663218 chr1:145663206 synonymous SNV . 0 9 hm5C_associated_SNPs_27870 0 0 1 0 1 RNF115 chr1:145663159 3'AG 145663159 Downstream 48bp
chr11 34167643 34167643 1 + G A LUAD 34167634 + 34167614 34167654 41 TTTTGATTTTTCTCTAGTGACAAGAAAAGGAAGTTAGAGGC TTTTGATTTTTCTCTAGTGACAAGAAAAGAAAGTTAGAGGC < 41bp 1 0.678463524583384 1 0.429255723953247 experiment 0.643072950833232 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34167634 chr11:34167643 synonymous SNV . 0 30 hm5C_associated_SNPs_27871 0 0 1 0 1 NAT10 chr11:34167631 3'AG 34167631 Downstream 13bp
chr9 96427980 96427980 1 + C G LUAD 96427976 + 96427956 96427996 41 CTTCTGCCCTAGCTCCAAGGCTCTCAGGCCCCCGACGAGCC CTTCTGCCCTAGCTCCAAGGCTCTGAGGCCCCCGACGAGCC < 41bp 1 0.363211997510366 1 0.319164365530014 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96427976 chr9:96427980 synonymous SNV . 0 25 hm5C_associated_SNPs_27872 0 0 1 0 1 PHF2 chr9:96427968 3'AG 96427968 Downstream 13bp
chr9 37430611 37430611 1 + G A LUAD 37430599 + 37430579 37430619 41 GGACTCTGCAACAAGGACTTCTTCCAGAAGATGAAGGAAAC GGACTCTGCAACAAGGACTTCTTCCAGAAGATAAAGGAAAC < 41bp 1 0.0911362893109481 1 0.116466492414474 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37430599 chr9:37430611 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_27875 0 0 1 0 1 GRHPR chr9:37430643 5'GT 37430643 Upstream 33bp
chr12 57626980 57626980 1 + A T LUAD 57626998 + 57626978 57627018 41 CTACCGGAAAGGGGTGAAGGCTGTGGACCCCAAGACTGGCC CTTCCGGAAAGGGGTGAAGGCTGTGGACCCCAAGACTGGCC < 41bp 1 0.668096020222403 1 0.367713093757629 experiment 0.663807959555193 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57626998 chr12:57626980 nonsynonymous SNV 0.998 0 3 hm5C_associated_SNPs_27876 0 0 1 0 1 SHMT2 chr12:57626963 3'AG 57626963 Downstream 18bp
chr2 220366640 220366640 1 + G T LUAD 220366650 + 220366630 220366670 41 CCAGATCCTGGCTGGGAGCCCCGAGGCATTCTTCGTGCTCA CCAGATCCTGTCTGGGAGCCCCGAGGCATTCTTCGTGCTCA < 41bp 1 0.481088142870738 1 0.292835235595703 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GMPPA ENSG00000144591 CDS Human protein_coding chr2:220366650 chr2:220366640 nonsynonymous SNV 0.991 1 11 hm5C_associated_SNPs_27877 0 0 1 0 1 GMPPA chr2:220366573 3'AG 220366573 Downstream 68bp
chr19 49968019 49968019 1 + G T LUAD 49968003 + 49967983 49968023 41 CCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCAGGTGA CCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCATGTGA < 41bp 1 0.262369924670498 1 0.0770179927349091 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968003 chr19:49968019 nonsynonymous SNV 0.846 0 37 hm5C_associated_SNPs_27878 0 0 1 0 1 ALDH16A1 chr19:49968019 5'GT 49968019 Upstream 1bp
chr19 49968019 49968019 1 + G T LUAD 49968004 + 49967984 49968024 41 CTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCAGGTGAG CTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCATGTGAG < 41bp 1 0.515016160099612 1 0.478860944509506 experiment 0.969967679800777 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968004 chr19:49968019 nonsynonymous SNV 0.846 0 36 hm5C_associated_SNPs_27879 0 0 1 0 1 ALDH16A1 chr19:49968019 5'GT 49968019 Upstream 1bp
chr19 49968019 49968019 1 + G T LUAD 49968015 + 49967995 49968035 41 CGGCTGGGCCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGC CGGCTGGGCCTGAAATAGGGCCCATGTGAGTCGTTGGGGGC < 41bp 1 0.103017834602064 1 0.155975908041 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968015 chr19:49968019 nonsynonymous SNV 0.846 0 25 hm5C_associated_SNPs_27880 0 0 1 0 1 ALDH16A1 chr19:49968019 5'GT 49968019 Upstream 1bp
chr19 49968019 49968019 1 + G T LUAD 49968016 + 49967996 49968036 41 GGCTGGGCCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGCC GGCTGGGCCTGAAATAGGGCCCATGTGAGTCGTTGGGGGCC < 41bp 1 0.0672045060796165 1 0.16939714550972 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968016 chr19:49968019 nonsynonymous SNV 0.846 0 24 hm5C_associated_SNPs_27881 0 0 1 0 1 ALDH16A1 chr19:49968019 5'GT 49968019 Upstream 1bp
chr19 49968019 49968019 1 + G T LUAD 49968017 + 49967997 49968037 41 GCTGGGCCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGCCA GCTGGGCCTGAAATAGGGCCCATGTGAGTCGTTGGGGGCCA < 41bp 1 0.340958609498835 1 0.19001516699791 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968017 chr19:49968019 nonsynonymous SNV 0.846 0 23 hm5C_associated_SNPs_27882 0 0 1 0 1 ALDH16A1 chr19:49968019 5'GT 49968019 Upstream 1bp
chr20 2844844 2844844 1 + G A LUAD 2844855 + 2844835 2844875 41 ATGAGCCACGCTCAGGGGAGCAGGTACCCCTTCTCCTAAAG ATGAGCCACACTCAGGGGAGCAGGTACCCCTTCTCCTAAAG < 41bp 1 0.423240711716761 1 0.429373681545258 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2844855 chr20:2844844 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_27883 0 0 1 0 1 VPS16 chr20:2844933 5'GT 2844933 Upstream 90bp
chr10 124914503 124914503 1 + C T LUAD 124914484 + 124914464 124914504 41 CAGCCACCCGAGGATGGCATCTCCTCCGTGAAGTTCAGCCC CAGCCACCCGAGGATGGCATCTCCTCCGTGAAGTTCAGCTC < 41bp 1 0.628562379219649 1 0.349489450454712 experiment 0.742875241560702 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control BUB3 ENSG00000154473 CDS Human protein_coding chr10:124914484 chr10:124914503 nonsynonymous SNV 0.997 1 40 hm5C_associated_SNPs_27887 0 0 1 0 2 BUB3 chr10:124914434 3'AG 124914434 Downstream 70bp
chr10 124914503 124914503 1 + C T LUAD 124914484 + 124914464 124914504 41 CAGCCACCCGAGGATGGCATCTCCTCCGTGAAGTTCAGCCC CAGCCACCCGAGGATGGCATCTCCTCCGTGAAGTTCAGCTC < 41bp 1 0.628562379219649 1 0.349489450454712 experiment 0.742875241560702 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control BUB3 ENSG00000154473 CDS Human protein_coding chr10:124914484 chr10:124914503 nonsynonymous SNV 0.997 1 40 hm5C_associated_SNPs_27887 0 0 1 0 2 BUB3 chr10:124914467 3'AG 124914467 Downstream 37bp
chr13 113907459 113907459 1 + C T LUAD 113907465 + 113907445 113907485 41 GTGGTCGAAAACTTCAGTGGCAAACTACTTTGGGACATGCT GTGGTCGAAAACTTTAGTGGCAAACTACTTTGGGACATGCT < 41bp 1 0.0618262709877593 1 0.110947489738464 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUL4A ENSG00000139842 CDS Human protein_coding chr13:113907465 chr13:113907459 stopgain 0.217 1 15 hm5C_associated_SNPs_27888 0 0 1 0 2 CUL4A chr13:113907396 3'AG 113907396 Downstream 64bp
chr13 113907459 113907459 1 + C T LUAD 113907465 + 113907445 113907485 41 GTGGTCGAAAACTTCAGTGGCAAACTACTTTGGGACATGCT GTGGTCGAAAACTTTAGTGGCAAACTACTTTGGGACATGCT < 41bp 1 0.0618262709877593 1 0.110947489738464 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUL4A ENSG00000139842 CDS Human protein_coding chr13:113907465 chr13:113907459 stopgain 0.217 1 15 hm5C_associated_SNPs_27888 0 0 1 0 2 CUL4A chr13:113907509 5'GT 113907509 Upstream 51bp
chr1 228401921 228401921 1 + C T LUAD 228401926 + 228401906 228401946 41 GGCGGTGCGCGTGGGCGACACGGCTATGTTTTGCGTGGAGC GGCGGTGCGCGTGGGTGACACGGCTATGTTTTGCGTGGAGC < 41bp 1 0.189424591313224 1 0.667710185050964 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228401926 chr1:228401921 synonymous SNV . 0 16 hm5C_associated_SNPs_27889 0 0 0 0 1 OBSCN chr1:228401875 3'AG 228401875 Downstream 47bp
chr5 139876809 139876809 1 + A G LUAD 139876806 + 139876786 139876826 41 TAGTTCAAGAACCAGATGGACTAATGGTTGCAACTCCAGCT TAGTTCAAGAACCAGATGGACTAGTGGTTGCAACTCCAGCT < 41bp 1 0.283445040713981 1 0.0999603569507599 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139876806 chr5:139876809 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_27890 0 0 1 0 1 ANKHD1;ANKHD1-EIF4EBP3 chr5:139876863 5'GT 139876863 Upstream 55bp
chr16 88098906 88098906 1 + G T LUAD 88098888 + 88098868 88098908 41 TCCAGCTTCTAGAGGCCACCCGCATCCCCTGCCTCCTGGCC TCCAGCTTCTAGAGGCCACCCGCATCCCCTGCCTCCTGTCC < 41bp 1 0.244011947922511 1 0.103298455476761 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BANP ENSG00000172530 CDS Human protein_coding chr16:88098888 chr16:88098906 nonsynonymous SNV 0.963 0 39 hm5C_associated_SNPs_27896 0 0 0 0 2 BANP chr16:88098873 3'AG 88098873 Downstream 34bp
chr16 88098906 88098906 1 + G T LUAD 88098888 + 88098868 88098908 41 TCCAGCTTCTAGAGGCCACCCGCATCCCCTGCCTCCTGGCC TCCAGCTTCTAGAGGCCACCCGCATCCCCTGCCTCCTGTCC < 41bp 1 0.244011947922511 1 0.103298455476761 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BANP ENSG00000172530 CDS Human protein_coding chr16:88098888 chr16:88098906 nonsynonymous SNV 0.963 0 39 hm5C_associated_SNPs_27896 0 0 0 0 2 BANP chr16:88098938 5'GT 88098938 Upstream 33bp
chr6 7594075 7594075 1 + G T LUAD 7594067 + 7594047 7594087 41 ATTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGTACCAT ATTGAGGAAAATGGGCTATACCAAAGAATAAGAGGTACCAT < 41bp 1 0.446514911653862 1 0.225918382406235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7594067 chr6:7594075 stopgain 1.000 1 29 hm5C_associated_SNPs_27897 0 0 1 1 1 SNRNP48 chr6:7594080 5'GT 7594080 Upstream 6bp
chr6 7594075 7594075 1 + G T LUAD 7594068 + 7594048 7594088 41 TTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGTACCATA TTGAGGAAAATGGGCTATACCAAAGAATAAGAGGTACCATA < 41bp 1 0.603577405377783 1 0.478912651538849 experiment 0.792845189244435 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7594068 chr6:7594075 stopgain 1.000 1 28 hm5C_associated_SNPs_27898 0 0 1 1 1 SNRNP48 chr6:7594080 5'GT 7594080 Upstream 6bp
chr9 124062262 124062262 1 + G A LUAD 124062243 + 124062223 124062263 41 CACTGCGTCGCGGGGGGCGTCCCAGGCGGGGGCGCCCCAGG CACTGCGTCGCGGGGGGCGTCCCAGGCGGGGGCGCCCCAAG < 41bp 1 0.579402267597098 1 0.860199689865112 experiment 0.841195464805805 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062243 chr9:124062262 synonymous SNV . 0 40 hm5C_associated_SNPs_27899 0 0 1 0 1 GSN chr9:124062283 5'GT 124062283 Upstream 22bp
chr9 124062262 124062262 1 + G A LUAD 124062244 + 124062224 124062264 41 ACTGCGTCGCGGGGGGCGTCCCAGGCGGGGGCGCCCCAGGG ACTGCGTCGCGGGGGGCGTCCCAGGCGGGGGCGCCCCAAGG < 41bp 1 0.718762998006518 1 0.832519888877869 experiment 0.562474003986963 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062244 chr9:124062262 synonymous SNV . 0 39 hm5C_associated_SNPs_27900 0 0 1 0 1 GSN chr9:124062283 5'GT 124062283 Upstream 22bp
chr9 124062262 124062262 1 + G A LUAD 124062255 + 124062235 124062275 41 GGGGGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCG GGGGGCGTCCCAGGCGGGGGCGCCCCAAGGGCGGGTGCCCG < 41bp 1 0.467657404422299 1 0.526512503623962 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062255 chr9:124062262 synonymous SNV . 0 28 hm5C_associated_SNPs_27901 0 0 1 0 1 GSN chr9:124062283 5'GT 124062283 Upstream 22bp
chr9 124062262 124062262 1 + G A LUAD 124062257 + 124062237 124062277 41 GGGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCGAG GGGCGTCCCAGGCGGGGGCGCCCCAAGGGCGGGTGCCCGAG < 41bp 1 0.624868439579306 1 0.650750637054443 experiment 0.750263120841388 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062257 chr9:124062262 synonymous SNV . 0 26 hm5C_associated_SNPs_27902 0 0 1 0 1 GSN chr9:124062283 5'GT 124062283 Upstream 22bp
chr9 124062262 124062262 1 + G A LUAD 124062258 + 124062238 124062278 41 GGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCGAGG GGCGTCCCAGGCGGGGGCGCCCCAAGGGCGGGTGCCCGAGG < 41bp 1 0.583793076928708 1 0.839473366737366 experiment 0.832413846142585 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062258 chr9:124062262 synonymous SNV . 0 25 hm5C_associated_SNPs_27903 0 0 1 0 1 GSN chr9:124062283 5'GT 124062283 Upstream 22bp
chr9 124062262 124062262 1 + G A LUAD 124062259 + 124062239 124062279 41 GCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCGAGGC GCGTCCCAGGCGGGGGCGCCCCAAGGGCGGGTGCCCGAGGC < 41bp 1 0.65898559023049 1 0.824453473091125 experiment 0.682028819539021 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062259 chr9:124062262 synonymous SNV . 0 24 hm5C_associated_SNPs_27904 0 0 1 0 1 GSN chr9:124062283 5'GT 124062283 Upstream 22bp
chr9 132630324 132630324 1 + A G LUAD 132630317 + 132630297 132630337 41 TCCTTCGCTGCCTGATGGACCAGCTGCACGAGGAGCTCAAG TCCTTCGCTGCCTGATGGACCAGCTGCGCGAGGAGCTCAAG < 41bp 1 0.420198645859395 1 0.741850078105927 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP20 ENSG00000136878 CDS Human protein_coding chr9:132630317 chr9:132630324 nonsynonymous SNV 0.985 4 28 hm5C_associated_SNPs_27905 0 0 1 0 1 USP20 chr9:132630284 3'AG 132630284 Downstream 41bp
chr19 18545055 18545055 1 + G A LUAD 18545070 + 18545050 18545090 41 CGTGTGATGGGGCGGCAGCCCCGGGCCTCTCTGCGGGCCTA CGTGTAATGGGGCGGCAGCCCCGGGCCTCTCTGCGGGCCTA < 41bp 1 0.754799212116832 1 0.668955326080322 experiment 0.490401575766336 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18545070 chr19:18545055 synonymous SNV . 0 6 hm5C_associated_SNPs_27907 0 0 1 0 1 SSBP4 chr19:18545027 3'AG 18545027 Downstream 29bp
chr1 10195123 10195123 1 + C G LUAD 10195142 + 10195122 10195162 41 TCAAGTTAGAAACAGTTGATCCCACGTATATTTTTCACCCA TGAAGTTAGAAACAGTTGATCCCACGTATATTTTTCACCCA < 41bp 1 0.0983476020209919 1 0.260007798671722 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10195142 chr1:10195123 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_27908 0 0 1 0 1 UBE4B chr1:10195046 3'AG 10195046 Downstream 78bp
chr2 207636950 207636950 1 + A T LUAD 207636939 + 207636919 207636959 41 TGTCCTTTAAGAATAATGATCAACATATTGCAGTCCTGCAA TGTCCTTTAAGAATAATGATCAACATATTGCTGTCCTGCAA < 41bp 1 0.683318686499703 1 0.568081855773926 experiment 0.633362627000594 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207636939 chr2:207636950 nonsynonymous SNV 0.998 1 32 hm5C_associated_SNPs_27909 0 0 1 0 2 FASTKD2 chr2:207636905 3'AG 207636905 Downstream 46bp
chr2 207636950 207636950 1 + A T LUAD 207636939 + 207636919 207636959 41 TGTCCTTTAAGAATAATGATCAACATATTGCAGTCCTGCAA TGTCCTTTAAGAATAATGATCAACATATTGCTGTCCTGCAA < 41bp 1 0.683318686499703 1 0.568081855773926 experiment 0.633362627000594 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207636939 chr2:207636950 nonsynonymous SNV 0.998 1 32 hm5C_associated_SNPs_27909 0 0 1 0 2 FASTKD2 chr2:207637044 5'GT 207637044 Upstream 95bp
chr4 20568908 20568908 1 + G T LUAD 20568888 + 20568868 20568908 41 TTTGAATTAATTTTCAGGTCCTGTGGATGTCAATATTCTAG TTTGAATTAATTTTCAGGTCCTGTGGATGTCAATATTCTAT < 41bp 1 0.0679269282410095 1 0.0936455726623535 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568888 chr4:20568908 nonsynonymous SNV 0.996 2 41 hm5C_associated_SNPs_27910 0 0 1 0 1 SLIT2 chr4:20568885 3'AG 20568885 Downstream 24bp
chr14 75936060 75936060 1 + G T LUAD 75936062 + 75936042 75936082 41 AGGAGCTGAAGCAGGAGCGGCAGCAGCTCATCCTGATGCTG AGGAGCTGAAGCAGGAGCTGCAGCAGCTCATCCTGATGCTG < 41bp 1 0.686309450727867 1 0.55707985162735 experiment 0.627381098544266 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JDP2 ENSG00000140044 CDS Human protein_coding chr14:75936062 chr14:75936060 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_27911 0 0 0 0 1 JDP2 chr14:75935993 3'AG 75935993 Downstream 68bp
chr14 75936060 75936060 1 + G T LUAD 75936065 + 75936045 75936085 41 AGCTGAAGCAGGAGCGGCAGCAGCTCATCCTGATGCTGAAC AGCTGAAGCAGGAGCTGCAGCAGCTCATCCTGATGCTGAAC < 41bp 1 0.381898812693637 1 0.742269456386566 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JDP2 ENSG00000140044 CDS Human protein_coding chr14:75936065 chr14:75936060 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_27912 0 0 0 0 1 JDP2 chr14:75935993 3'AG 75935993 Downstream 68bp
chr7 142561960 142561960 1 + G T LUAD 142561972 + 142561952 142561992 41 TACCGTCAGGCTGAGGAGCCCGACAGCCCTGACAGCGTTTC TACCGTCATGCTGAGGAGCCCGACAGCCCTGACAGCGTTTC < 41bp 1 0.667988293405995 1 0.24645671248436 experiment 0.664023413188009 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142561972 chr7:142561960 nonsynonymous SNV 0.992 4 9 hm5C_associated_SNPs_27913 0 0 0 0 1 EPHB6 chr7:142562020 5'GT 142562020 Upstream 61bp
chr19 45322685 45322685 1 + G T LUAD 45322701 + 45322681 45322721 41 GATGGCATCTCCTGTGAAGCCTCCAACCCCCACGGGAACAA GATGTCATCTCCTGTGAAGCCTCCAACCCCCACGGGAACAA < 41bp 1 0.786231063190807 1 0.876736104488373 experiment 0.427537873618386 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control BCAM ENSG00000187244 CDS Human protein_coding chr19:45322701 chr19:45322685 nonsynonymous SNV 0.527 3 5 hm5C_associated_SNPs_27916 0 0 0 0 2 BCAM chr19:45322603 3'AG 45322603 Downstream 83bp
chr19 45322685 45322685 1 + G T LUAD 45322701 + 45322681 45322721 41 GATGGCATCTCCTGTGAAGCCTCCAACCCCCACGGGAACAA GATGTCATCTCCTGTGAAGCCTCCAACCCCCACGGGAACAA < 41bp 1 0.786231063190807 1 0.876736104488373 experiment 0.427537873618386 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control BCAM ENSG00000187244 CDS Human protein_coding chr19:45322701 chr19:45322685 nonsynonymous SNV 0.527 3 5 hm5C_associated_SNPs_27916 0 0 0 0 2 BCAM chr19:45322747 5'GT 45322747 Upstream 63bp
chr9 135942538 135942538 1 + A T LUAD 135942521 + 135942501 135942541 41 GGGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTG GGGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTTCTG < 41bp 1 0.268615839392888 1 0.0505049228668213 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942521 chr9:135942538 nonsynonymous SNV 0.275 1 38 hm5C_associated_SNPs_27919 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 64bp
chr9 135942538 135942538 1 + A T LUAD 135942522 + 135942502 135942542 41 GGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTGA GGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTTCTGA < 41bp 1 0.403007737305109 1 0.276200920343399 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942522 chr9:135942538 nonsynonymous SNV 0.275 1 37 hm5C_associated_SNPs_27920 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 64bp
chr9 135942538 135942538 1 + A T LUAD 135942523 + 135942503 135942543 41 GTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTGAT GTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTTCTGAT < 41bp 1 0.340011092796367 1 0.341963171958923 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942523 chr9:135942538 nonsynonymous SNV 0.275 1 36 hm5C_associated_SNPs_27921 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 64bp
chr9 135942538 135942538 1 + A T LUAD 135942539 + 135942519 135942559 41 GGCCCAGTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGC GGCCCAGTGTCTGAAGGTTTCTGATCCCCGAGCCCTGACGC < 41bp 1 0.651322497455741 1 0.0542872846126556 experiment 0.697355005088518 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942539 chr9:135942538 nonsynonymous SNV 0.275 1 20 hm5C_associated_SNPs_27922 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 64bp
chr9 135942538 135942538 1 + A T LUAD 135942544 + 135942524 135942564 41 AGTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCC AGTGTCTGAAGGTTTCTGATCCCCGAGCCCTGACGCTGGCC < 41bp 1 0.389419701969068 1 0.0576985478401184 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942544 chr9:135942538 nonsynonymous SNV 0.275 1 15 hm5C_associated_SNPs_27923 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 64bp
chr9 135942538 135942538 1 + A T LUAD 135942545 + 135942525 135942565 41 GTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCCT GTGTCTGAAGGTTTCTGATCCCCGAGCCCTGACGCTGGCCT < 41bp 1 0.700224706990814 1 0.244971334934235 experiment 0.599550586018373 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942545 chr9:135942538 nonsynonymous SNV 0.275 1 14 hm5C_associated_SNPs_27924 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 64bp
chr9 135942538 135942538 1 + A T LUAD 135942546 + 135942526 135942566 41 TGTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCCTA TGTCTGAAGGTTTCTGATCCCCGAGCCCTGACGCTGGCCTA < 41bp 1 0.60015628238278 1 0.492822110652924 experiment 0.799687435234439 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942546 chr9:135942538 nonsynonymous SNV 0.275 1 13 hm5C_associated_SNPs_27925 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 64bp
chr9 135942538 135942538 1 + A T LUAD 135942547 + 135942527 135942567 41 GTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCCTAT GTCTGAAGGTTTCTGATCCCCGAGCCCTGACGCTGGCCTAT < 41bp 1 0.635089440733615 1 0.435812652111053 experiment 0.72982111853277 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942547 chr9:135942538 nonsynonymous SNV 0.275 1 12 hm5C_associated_SNPs_27926 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 64bp
chr9 135942538 135942538 1 + A T LUAD 135942552 + 135942532 135942572 41 AAGGTTACTGATCCCCGAGCCCTGACGCTGGCCTATAAGGT AAGGTTTCTGATCCCCGAGCCCTGACGCTGGCCTATAAGGT < 41bp 1 0.136740288842119 1 0.219916731119156 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135942552 chr9:135942538 nonsynonymous SNV 0.275 1 7 hm5C_associated_SNPs_27927 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 64bp
chr9 135942538 135942538 1 + A T LUAD 135942553 + 135942533 135942573 41 AGGTTACTGATCCCCGAGCCCTGACGCTGGCCTATAAGGTG AGGTTTCTGATCCCCGAGCCCTGACGCTGGCCTATAAGGTG < 41bp 1 0.333106097212675 1 0.125101357698441 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135942553 chr9:135942538 nonsynonymous SNV 0.275 1 6 hm5C_associated_SNPs_27928 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 64bp
chr7 23221741 23221741 1 + C T LUAD 23221740 + 23221720 23221760 41 TTCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTG TTCTTCCTTCAAGGCCGGTGCTGCTTTGGAGATCGGTGCTG < 41bp 1 0.62584007368036 1 0.388384103775024 experiment 0.74831985263928 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221740 chr7:23221741 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_27929 0 0 1 3 1 NUPL2 chr7:23221825 5'GT 23221825 Upstream 85bp
chr7 142458475 142458475 1 + A G LUAD 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTCCCCTGCCAGGTGTCCC < 41bp 1 0.157841315307715 1 0.198518395423889 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458475 nonsynonymous SNV 0.993 5 30 hm5C_associated_SNPs_27934 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 70bp
chr7 142458475 142458475 1 + A G LUAD 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTCCCCTGCCAGGTGTCCC < 41bp 1 0.157841315307715 1 0.198518395423889 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458475 nonsynonymous SNV 0.993 5 30 hm5C_associated_SNPs_27934 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 91bp
chr7 142458475 142458475 1 + A G LUAD 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTCCCCTGCCAGGTGTCCCTGAA < 41bp 1 0.178210922493265 1 0.254286170005798 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458475 nonsynonymous SNV 0.993 5 26 hm5C_associated_SNPs_27935 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 70bp
chr7 142458475 142458475 1 + A G LUAD 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTCCCCTGCCAGGTGTCCCTGAA < 41bp 1 0.178210922493265 1 0.254286170005798 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458475 nonsynonymous SNV 0.993 5 26 hm5C_associated_SNPs_27935 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 91bp
chr7 142458475 142458475 1 + A G LUAD 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTCCCCTGCCAGGTGTCCCTGAAT < 41bp 1 0.0699923913098536 1 0.0786914527416229 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458475 nonsynonymous SNV 0.993 5 25 hm5C_associated_SNPs_27936 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 70bp
chr7 142458475 142458475 1 + A G LUAD 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTCCCCTGCCAGGTGTCCCTGAAT < 41bp 1 0.0699923913098536 1 0.0786914527416229 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458475 nonsynonymous SNV 0.993 5 25 hm5C_associated_SNPs_27936 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 91bp
chr7 142458475 142458475 1 + A G LUAD 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTCCCCTGCCAGGTGTCCCTGAATT < 41bp 1 0.0426137556167088 1 0.088590532541275 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458475 nonsynonymous SNV 0.993 5 24 hm5C_associated_SNPs_27937 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 70bp
chr7 142458475 142458475 1 + A G LUAD 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTCCCCTGCCAGGTGTCCCTGAATT < 41bp 1 0.0426137556167088 1 0.088590532541275 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458475 nonsynonymous SNV 0.993 5 24 hm5C_associated_SNPs_27937 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 91bp
chr7 142458475 142458475 1 + A G LUAD 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTCCCCTGCCAGGTGTCCCTGAATTC < 41bp 1 0.236324518015918 1 0.0960106253623962 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458475 nonsynonymous SNV 0.993 5 23 hm5C_associated_SNPs_27938 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 70bp
chr7 142458475 142458475 1 + A G LUAD 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTCCCCTGCCAGGTGTCCCTGAATTC < 41bp 1 0.236324518015918 1 0.0960106253623962 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458475 nonsynonymous SNV 0.993 5 23 hm5C_associated_SNPs_27938 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 91bp
chr7 142458475 142458475 1 + A G LUAD 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCCTGCCAGGTGTCCCTGAATTCTGG < 41bp 1 0.19531951763789 1 0.39233934879303 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458475 nonsynonymous SNV 0.993 5 20 hm5C_associated_SNPs_27939 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 70bp
chr7 142458475 142458475 1 + A G LUAD 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCCTGCCAGGTGTCCCTGAATTCTGG < 41bp 1 0.19531951763789 1 0.39233934879303 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458475 nonsynonymous SNV 0.993 5 20 hm5C_associated_SNPs_27939 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 91bp
chr7 142458475 142458475 1 + A G LUAD 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTGCCAGGTGTCCCTGAATTCTGGC < 41bp 1 0.555395079143859 1 0.849021673202515 experiment 0.889209841712283 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458475 nonsynonymous SNV 0.993 5 19 hm5C_associated_SNPs_27940 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 70bp
chr7 142458475 142458475 1 + A G LUAD 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTGCCAGGTGTCCCTGAATTCTGGC < 41bp 1 0.555395079143859 1 0.849021673202515 experiment 0.889209841712283 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458475 nonsynonymous SNV 0.993 5 19 hm5C_associated_SNPs_27940 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 91bp
chr7 142458475 142458475 1 + A G LUAD 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTGCCAGGTGTCCCTGAATTCTGGCTACCACT < 41bp 1 0.136363064390398 1 0.062010794878006 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458475 nonsynonymous SNV 0.993 5 12 hm5C_associated_SNPs_27941 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 70bp
chr7 142458475 142458475 1 + A G LUAD 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTGCCAGGTGTCCCTGAATTCTGGCTACCACT < 41bp 1 0.136363064390398 1 0.062010794878006 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458475 nonsynonymous SNV 0.993 5 12 hm5C_associated_SNPs_27941 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 91bp
chr7 142458475 142458475 1 + A G LUAD 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTGCCAGGTGTCCCTGAATTCTGGCTACCACTT < 41bp 1 0.322578228023712 1 0.0972315073013306 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458475 nonsynonymous SNV 0.993 5 11 hm5C_associated_SNPs_27942 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 70bp
chr7 142458475 142458475 1 + A G LUAD 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTGCCAGGTGTCCCTGAATTCTGGCTACCACTT < 41bp 1 0.322578228023712 1 0.0972315073013306 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458475 nonsynonymous SNV 0.993 5 11 hm5C_associated_SNPs_27942 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 91bp
chr7 142458475 142458475 1 + A G LUAD 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTGCCAGGTGTCCCTGAATTCTGGCTACCACTTC < 41bp 1 0.769556796345349 1 0.46272200345993 experiment 0.460886407309301 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458475 nonsynonymous SNV 0.993 5 10 hm5C_associated_SNPs_27943 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 70bp
chr7 142458475 142458475 1 + A G LUAD 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTGCCAGGTGTCCCTGAATTCTGGCTACCACTTC < 41bp 1 0.769556796345349 1 0.46272200345993 experiment 0.460886407309301 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458475 nonsynonymous SNV 0.993 5 10 hm5C_associated_SNPs_27943 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 91bp
chr7 142458475 142458475 1 + A G LUAD 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG CTGCCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG < 41bp 1 0.792207818578818 1 0.70125275850296 experiment 0.415584362842364 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458475 nonsynonymous SNV 0.993 5 3 hm5C_associated_SNPs_27944 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 70bp
chr7 142458475 142458475 1 + A G LUAD 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG CTGCCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG < 41bp 1 0.792207818578818 1 0.70125275850296 experiment 0.415584362842364 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458475 nonsynonymous SNV 0.993 5 3 hm5C_associated_SNPs_27944 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 91bp
chr1 161088957 161088957 1 + C G LUAD 161088961 + 161088941 161088981 41 TCTCCTCTTCCTCCTGCGAACTGCCCCTGGTGGCTGTGTGC TCTCCTCTTCCTCCTGGGAACTGCCCCTGGTGGCTGTGTGC < 41bp 1 0.334420966947984 1 0.139046162366867 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NIT1 ENSG00000158793 CDS Human protein_coding chr1:161088961 chr1:161088957 nonsynonymous SNV 0.994 0 17 hm5C_associated_SNPs_27946 0 0 1 0 1 NIT1 chr1:161088924 3'AG 161088924 Downstream 34bp
chr8 145151603 145151603 1 + C T LUAD 145151587 + 145151567 145151607 41 TCTACTTCAACCCCTACTTTCCTGGCCAGGCCATTGCCATG TCTACTTCAACCCCTACTTTCCTGGCCAGGCCATTGTCATG < 41bp 1 0.271126506822988 1 0.144103318452835 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151587 chr8:145151603 nonsynonymous SNV 0.981 1 37 hm5C_associated_SNPs_27947 0 0 1 0 1 CYC1 chr8:145151647 5'GT 145151647 Upstream 45bp
chr7 98564667 98564667 1 + C T LUAD 98564687 + 98564667 98564707 41 CCTACACTCCGGGAGAAGTCCATTTTGCTTGTGAAGATGAT TCTACACTCCGGGAGAAGTCCATTTTGCTTGTGAAGATGAT < 41bp 1 0.011046855933054 1 0.0873718559741974 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98564687 chr7:98564667 nonsynonymous SNV 0.991 4 1 hm5C_associated_SNPs_27954 0 0 1 0 1 TRRAP chr7:98564664 3'AG 98564664 Downstream 4bp
chr10 102822842 102822842 1 + C A LUAD 102822848 + 102822828 102822868 41 TCACTGTGGCACACCCGGGGCCCTGCGAATCGGGTACGCAT TCACTGTGGCACACACGGGGCCCTGCGAATCGGGTACGCAT < 41bp 1 0.0778179377930172 1 0.043243944644928 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102822848 chr10:102822842 nonsynonymous SNV 0.998 0 15 hm5C_associated_SNPs_27955 0 0 0 0 1 KAZALD1 chr10:102822860 5'GT 102822860 Upstream 19bp
chr10 102822842 102822842 1 + C A LUAD 102822849 + 102822829 102822869 41 CACTGTGGCACACCCGGGGCCCTGCGAATCGGGTACGCATG CACTGTGGCACACACGGGGCCCTGCGAATCGGGTACGCATG < 41bp 1 0.0658909176039869 1 0.0550599992275238 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102822849 chr10:102822842 nonsynonymous SNV 0.998 0 14 hm5C_associated_SNPs_27956 0 0 0 0 1 KAZALD1 chr10:102822860 5'GT 102822860 Upstream 19bp
chr10 102822842 102822842 1 + C A LUAD 102822850 + 102822830 102822870 41 ACTGTGGCACACCCGGGGCCCTGCGAATCGGGTACGCATGG ACTGTGGCACACACGGGGCCCTGCGAATCGGGTACGCATGG < 41bp 1 0.552624572621167 1 0.0886781215667725 experiment 0.894750854757667 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102822850 chr10:102822842 nonsynonymous SNV 0.998 0 13 hm5C_associated_SNPs_27957 0 0 0 0 1 KAZALD1 chr10:102822860 5'GT 102822860 Upstream 19bp
chr17 78350164 78350164 1 + C T LUAD 78350171 + 78350151 78350191 41 TCCTGATATCAGCCGTTTTGCAACATCGCTCGTGGACAATT TCCTGATATCAGCTGTTTTGCAACATCGCTCGTGGACAATT < 41bp 1 0.189987635145485 1 0.186686247587204 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78350171 chr17:78350164 nonsynonymous SNV 0.000 0 14 hm5C_associated_SNPs_27958 0 0 1 0 1 RNF213 chr17:78350101 3'AG 78350101 Downstream 64bp
chr15 22933576 22933576 1 + A G LUAD 22933564 + 22933544 22933584 41 TCTTTTTGTTTTCAAAGGGCCGCTCAGTTTTTACGTAAAAT TCTTTTTGTTTTCAAAGGGCCGCTCAGTTTTTGCGTAAAAT < 41bp 1 0.023396885405211 1 0.0872916877269745 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22933564 chr15:22933576 synonymous SNV . 0 33 hm5C_associated_SNPs_27959 0 0 1 0 2 CYFIP1 chr15:22933561 3'AG 22933561 Downstream 16bp
chr15 22933576 22933576 1 + A G LUAD 22933564 + 22933544 22933584 41 TCTTTTTGTTTTCAAAGGGCCGCTCAGTTTTTACGTAAAAT TCTTTTTGTTTTCAAAGGGCCGCTCAGTTTTTGCGTAAAAT < 41bp 1 0.023396885405211 1 0.0872916877269745 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22933564 chr15:22933576 synonymous SNV . 0 33 hm5C_associated_SNPs_27959 0 0 1 0 2 CYFIP1 chr15:22933657 5'GT 22933657 Upstream 82bp
chr17 39975577 39975577 1 + C T LUAD 39975559 + 39975539 39975579 41 CAGCTAGAGACGCTGGAGCTCCCCCCCGGCTGTGTCCGCAG CAGCTAGAGACGCTGGAGCTCCCCCCCGGCTGTGTCCGTAG < 41bp 1 0.192069725256799 1 0.155062645673752 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39975559 chr17:39975577 synonymous SNV . 0 39 hm5C_associated_SNPs_27961 0 0 1 0 1 FKBP10 chr17:39975651 5'GT 39975651 Upstream 75bp
chr11 34129826 34129826 1 + A G LUAD 34129843 + 34129823 34129863 41 AGTAGCTGAGCGGCAAAGATCTCTCTTTGTTGTAGTTGGGG AGTGGCTGAGCGGCAAAGATCTCTCTTTGTTGTAGTTGGGG < 41bp 1 0.207765311762391 1 0.140373289585114 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129843 chr11:34129826 synonymous SNV . 0 4 hm5C_associated_SNPs_27962 0 0 1 0 2 NAT10 chr11:34129758 3'AG 34129758 Downstream 69bp
chr11 34129826 34129826 1 + A G LUAD 34129843 + 34129823 34129863 41 AGTAGCTGAGCGGCAAAGATCTCTCTTTGTTGTAGTTGGGG AGTGGCTGAGCGGCAAAGATCTCTCTTTGTTGTAGTTGGGG < 41bp 1 0.207765311762391 1 0.140373289585114 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129843 chr11:34129826 synonymous SNV . 0 4 hm5C_associated_SNPs_27962 0 0 1 0 2 NAT10 chr11:34129880 5'GT 34129880 Upstream 55bp
chr1 22332024 22332024 1 + G T LUAD 22332004 + 22331984 22332024 41 TGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCG TGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCT < 41bp 1 0.159816901318089 1 0.043851912021637 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332004 chr1:22332024 nonsynonymous SNV 0.608 3 41 hm5C_associated_SNPs_27963 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 85bp
chr1 22332024 22332024 1 + G T LUAD 22332004 + 22331984 22332024 41 TGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCG TGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCT < 41bp 1 0.159816901318089 1 0.043851912021637 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332004 chr1:22332024 nonsynonymous SNV 0.608 3 41 hm5C_associated_SNPs_27963 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 14bp
chr1 22332024 22332024 1 + G T LUAD 22332005 + 22331985 22332025 41 GGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGG GGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCTG < 41bp 1 0.396052771899834 1 0.312018185853958 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332005 chr1:22332024 nonsynonymous SNV 0.608 3 40 hm5C_associated_SNPs_27964 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 85bp
chr1 22332024 22332024 1 + G T LUAD 22332005 + 22331985 22332025 41 GGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGG GGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCTG < 41bp 1 0.396052771899834 1 0.312018185853958 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332005 chr1:22332024 nonsynonymous SNV 0.608 3 40 hm5C_associated_SNPs_27964 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 14bp
chr1 22332024 22332024 1 + G T LUAD 22332019 + 22331999 22332039 41 CGCCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGT CGCCCCCGATTGGGTTGTGACTGCCTGCCACTGCATCTCGT < 41bp 1 0.591055599329826 1 0.463194102048874 experiment 0.817888801340348 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332019 chr1:22332024 nonsynonymous SNV 0.608 3 26 hm5C_associated_SNPs_27965 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 85bp
chr1 22332024 22332024 1 + G T LUAD 22332019 + 22331999 22332039 41 CGCCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGT CGCCCCCGATTGGGTTGTGACTGCCTGCCACTGCATCTCGT < 41bp 1 0.591055599329826 1 0.463194102048874 experiment 0.817888801340348 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332019 chr1:22332024 nonsynonymous SNV 0.608 3 26 hm5C_associated_SNPs_27965 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 14bp
chr1 22332024 22332024 1 + G T LUAD 22332022 + 22332002 22332042 41 CCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAG CCCCGATTGGGTTGTGACTGCCTGCCACTGCATCTCGTGAG < 41bp 1 0.153843215167714 1 0.0749252438545227 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332022 chr1:22332024 nonsynonymous SNV 0.608 3 23 hm5C_associated_SNPs_27966 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 85bp
chr1 22332024 22332024 1 + G T LUAD 22332022 + 22332002 22332042 41 CCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAG CCCCGATTGGGTTGTGACTGCCTGCCACTGCATCTCGTGAG < 41bp 1 0.153843215167714 1 0.0749252438545227 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332022 chr1:22332024 nonsynonymous SNV 0.608 3 23 hm5C_associated_SNPs_27966 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 14bp
chr1 22332024 22332024 1 + G T LUAD 22332023 + 22332003 22332043 41 CCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGT CCCGATTGGGTTGTGACTGCCTGCCACTGCATCTCGTGAGT < 41bp 1 0.414766388571612 1 0.0809365510940552 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332023 chr1:22332024 nonsynonymous SNV 0.608 3 22 hm5C_associated_SNPs_27967 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 85bp
chr1 22332024 22332024 1 + G T LUAD 22332023 + 22332003 22332043 41 CCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGT CCCGATTGGGTTGTGACTGCCTGCCACTGCATCTCGTGAGT < 41bp 1 0.414766388571612 1 0.0809365510940552 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332023 chr1:22332024 nonsynonymous SNV 0.608 3 22 hm5C_associated_SNPs_27967 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 14bp
chr1 22332024 22332024 1 + G T LUAD 22332026 + 22332006 22332046 41 GATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGTTCT GATTGGGTTGTGACTGCCTGCCACTGCATCTCGTGAGTTCT < 41bp 1 0.191912353719047 1 0.0690514445304871 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332026 chr1:22332024 nonsynonymous SNV 0.608 3 19 hm5C_associated_SNPs_27968 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 85bp
chr1 22332024 22332024 1 + G T LUAD 22332026 + 22332006 22332046 41 GATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGTTCT GATTGGGTTGTGACTGCCTGCCACTGCATCTCGTGAGTTCT < 41bp 1 0.191912353719047 1 0.0690514445304871 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332026 chr1:22332024 nonsynonymous SNV 0.608 3 19 hm5C_associated_SNPs_27968 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 14bp
chr1 22332024 22332024 1 + G T LUAD 22332027 + 22332007 22332047 41 ATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGTTCTC ATTGGGTTGTGACTGCCTGCCACTGCATCTCGTGAGTTCTC < 41bp 1 0.391929442550621 1 0.307381719350815 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332027 chr1:22332024 nonsynonymous SNV 0.608 3 18 hm5C_associated_SNPs_27969 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 85bp
chr1 22332024 22332024 1 + G T LUAD 22332027 + 22332007 22332047 41 ATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGTTCTC ATTGGGTTGTGACTGCCTGCCACTGCATCTCGTGAGTTCTC < 41bp 1 0.391929442550621 1 0.307381719350815 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332027 chr1:22332024 nonsynonymous SNV 0.608 3 18 hm5C_associated_SNPs_27969 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 14bp
chr1 22332024 22332024 1 + G T LUAD 22332029 + 22332009 22332049 41 TGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGTTCTCTA TGGGTTGTGACTGCCTGCCACTGCATCTCGTGAGTTCTCTA < 41bp 1 0.755723522607111 1 0.775864720344543 experiment 0.488552954785779 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332029 chr1:22332024 nonsynonymous SNV 0.608 3 16 hm5C_associated_SNPs_27970 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 85bp
chr1 22332024 22332024 1 + G T LUAD 22332029 + 22332009 22332049 41 TGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGTTCTCTA TGGGTTGTGACTGCCTGCCACTGCATCTCGTGAGTTCTCTA < 41bp 1 0.755723522607111 1 0.775864720344543 experiment 0.488552954785779 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332029 chr1:22332024 nonsynonymous SNV 0.608 3 16 hm5C_associated_SNPs_27970 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 14bp
chr1 22332024 22332024 1 + G T LUAD 22332032 + 22332012 22332052 41 GTTGTGACTGCCGGCCACTGCATCTCGTGAGTTCTCTACCC GTTGTGACTGCCTGCCACTGCATCTCGTGAGTTCTCTACCC < 41bp 1 0.358446189091629 1 0.204976826906204 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332032 chr1:22332024 nonsynonymous SNV 0.608 3 13 hm5C_associated_SNPs_27971 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 85bp
chr1 22332024 22332024 1 + G T LUAD 22332032 + 22332012 22332052 41 GTTGTGACTGCCGGCCACTGCATCTCGTGAGTTCTCTACCC GTTGTGACTGCCTGCCACTGCATCTCGTGAGTTCTCTACCC < 41bp 1 0.358446189091629 1 0.204976826906204 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332032 chr1:22332024 nonsynonymous SNV 0.608 3 13 hm5C_associated_SNPs_27971 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 14bp
chr1 22332024 22332024 1 + G T LUAD 22332035 + 22332015 22332055 41 GTGACTGCCGGCCACTGCATCTCGTGAGTTCTCTACCCTGT GTGACTGCCTGCCACTGCATCTCGTGAGTTCTCTACCCTGT < 41bp 1 0.735496163194062 1 0.0958452522754669 experiment 0.529007673611877 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332035 chr1:22332024 nonsynonymous SNV 0.608 3 10 hm5C_associated_SNPs_27972 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 85bp
chr1 22332024 22332024 1 + G T LUAD 22332035 + 22332015 22332055 41 GTGACTGCCGGCCACTGCATCTCGTGAGTTCTCTACCCTGT GTGACTGCCTGCCACTGCATCTCGTGAGTTCTCTACCCTGT < 41bp 1 0.735496163194062 1 0.0958452522754669 experiment 0.529007673611877 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332035 chr1:22332024 nonsynonymous SNV 0.608 3 10 hm5C_associated_SNPs_27972 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 14bp
chr17 79080634 79080634 1 + G A LUAD 79080643 + 79080623 79080663 41 CGCCGCCTCCCGGGCCTTCCCCGCCCAGACGGCCAGCGGCT CGCCGCCTCCCAGGCCTTCCCCGCCCAGACGGCCAGCGGCT < 41bp 1 0.359387822880769 1 0.307876706123352 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080643 chr17:79080634 nonsynonymous SNV 0.410 0 12 hm5C_associated_SNPs_27982 0 0 1 0 2 BAIAP2 chr17:79080545 3'AG 79080545 Downstream 90bp
chr17 79080634 79080634 1 + G A LUAD 79080643 + 79080623 79080663 41 CGCCGCCTCCCGGGCCTTCCCCGCCCAGACGGCCAGCGGCT CGCCGCCTCCCAGGCCTTCCCCGCCCAGACGGCCAGCGGCT < 41bp 1 0.359387822880769 1 0.307876706123352 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080643 chr17:79080634 nonsynonymous SNV 0.410 0 12 hm5C_associated_SNPs_27982 0 0 1 0 2 BAIAP2 chr17:79080707 5'GT 79080707 Upstream 74bp
chr17 79080634 79080634 1 + G A LUAD 79080644 + 79080624 79080664 41 GCCGCCTCCCGGGCCTTCCCCGCCCAGACGGCCAGCGGCTT GCCGCCTCCCAGGCCTTCCCCGCCCAGACGGCCAGCGGCTT < 41bp 1 0.549955810087659 1 0.0773421227931976 experiment 0.900088379824683 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080644 chr17:79080634 nonsynonymous SNV 0.410 0 11 hm5C_associated_SNPs_27983 0 0 1 0 2 BAIAP2 chr17:79080545 3'AG 79080545 Downstream 90bp
chr17 79080634 79080634 1 + G A LUAD 79080644 + 79080624 79080664 41 GCCGCCTCCCGGGCCTTCCCCGCCCAGACGGCCAGCGGCTT GCCGCCTCCCAGGCCTTCCCCGCCCAGACGGCCAGCGGCTT < 41bp 1 0.549955810087659 1 0.0773421227931976 experiment 0.900088379824683 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080644 chr17:79080634 nonsynonymous SNV 0.410 0 11 hm5C_associated_SNPs_27983 0 0 1 0 2 BAIAP2 chr17:79080707 5'GT 79080707 Upstream 74bp
chr9 124534959 124534959 1 + G T LUAD 124534965 + 124534945 124534985 41 TCACAAGGTCCTCCGGGGTCCAGCCCTCACCTGCCCGCAGC TCACAAGGTCCTCCTGGGTCCAGCCCTCACCTGCCCGCAGC < 41bp 1 0.249875127520996 1 0.108974456787109 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124534965 chr9:124534959 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_27984 0 0 1 0 2 DAB2IP chr9:124534886 3'AG 124534886 Downstream 74bp
chr9 124534959 124534959 1 + G T LUAD 124534965 + 124534945 124534985 41 TCACAAGGTCCTCCGGGGTCCAGCCCTCACCTGCCCGCAGC TCACAAGGTCCTCCTGGGTCCAGCCCTCACCTGCCCGCAGC < 41bp 1 0.249875127520996 1 0.108974456787109 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124534965 chr9:124534959 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_27984 0 0 1 0 2 DAB2IP chr9:124534952 3'AG 124534952 Downstream 8bp
chr13 111111202 111111202 1 + G T LUAD 111111217 + 111111197 111111237 41 CGCAGGCATCAACGGGGAGCCGGGGAGGAAAGGGGACAGAG CGCAGTCATCAACGGGGAGCCGGGGAGGAAAGGGGACAGAG < 41bp 1 0.692605761777858 1 0.814523458480835 experiment 0.614788476444283 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111217 chr13:111111202 nonsynonymous SNV 0.081 5 6 hm5C_associated_SNPs_27985 0 0 0 0 2 COL4A2 chr13:111111118 3'AG 111111118 Downstream 85bp
chr13 111111202 111111202 1 + G T LUAD 111111217 + 111111197 111111237 41 CGCAGGCATCAACGGGGAGCCGGGGAGGAAAGGGGACAGAG CGCAGTCATCAACGGGGAGCCGGGGAGGAAAGGGGACAGAG < 41bp 1 0.692605761777858 1 0.814523458480835 experiment 0.614788476444283 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111217 chr13:111111202 nonsynonymous SNV 0.081 5 6 hm5C_associated_SNPs_27985 0 0 0 0 2 COL4A2 chr13:111111281 5'GT 111111281 Upstream 80bp
chr4 79766106 79766106 1 + G A LUAD 79766114 + 79766094 79766134 41 TTGTTGAATGATGGTGGGAACTATGTACTTTGTGACTTTGG TTGTTGAATGATAGTGGGAACTATGTACTTTGTGACTTTGG < 41bp 1 0.0997983222201379 1 0.123295783996582 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP2K ENSG00000138756 CDS Human protein_coding chr4:79766114 chr4:79766106 nonsynonymous SNV 0.985 0 13 hm5C_associated_SNPs_27986 0 0 1 0 2 BMP2K chr4:79766082 3'AG 79766082 Downstream 25bp
chr4 79766106 79766106 1 + G A LUAD 79766114 + 79766094 79766134 41 TTGTTGAATGATGGTGGGAACTATGTACTTTGTGACTTTGG TTGTTGAATGATAGTGGGAACTATGTACTTTGTGACTTTGG < 41bp 1 0.0997983222201379 1 0.123295783996582 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP2K ENSG00000138756 CDS Human protein_coding chr4:79766114 chr4:79766106 nonsynonymous SNV 0.985 0 13 hm5C_associated_SNPs_27986 0 0 1 0 2 BMP2K chr4:79766203 5'GT 79766203 Upstream 98bp
chr6 25450201 25450201 1 + C T LUAD 25450192 + 25450172 25450212 41 AGTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAGCA AGTCTCCAGGCGCTGTGGGACAGCCAGACTGTGGCTGAGCA < 41bp 1 0.389879207141966 1 0.439896583557129 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25450192 chr6:25450201 synonymous SNV . 0 30 hm5C_associated_SNPs_27988 0 0 0 0 2 CARMIL1 chr6:25450126 3'AG 25450126 Downstream 76bp
chr6 25450201 25450201 1 + C T LUAD 25450192 + 25450172 25450212 41 AGTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAGCA AGTCTCCAGGCGCTGTGGGACAGCCAGACTGTGGCTGAGCA < 41bp 1 0.389879207141966 1 0.439896583557129 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25450192 chr6:25450201 synonymous SNV . 0 30 hm5C_associated_SNPs_27988 0 0 0 0 2 CARMIL1 chr6:25450223 5'GT 25450223 Upstream 23bp
chr4 79766107 79766107 1 + G T LUAD 79766114 + 79766094 79766134 41 TTGTTGAATGATGGTGGGAACTATGTACTTTGTGACTTTGG TTGTTGAATGATGTTGGGAACTATGTACTTTGTGACTTTGG < 41bp 1 0.11563220066483 1 0.164749205112457 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP2K ENSG00000138756 CDS Human protein_coding chr4:79766114 chr4:79766107 nonsynonymous SNV 0.986 0 14 hm5C_associated_SNPs_27990 0 0 1 1 2 BMP2K chr4:79766082 3'AG 79766082 Downstream 26bp
chr4 79766107 79766107 1 + G T LUAD 79766114 + 79766094 79766134 41 TTGTTGAATGATGGTGGGAACTATGTACTTTGTGACTTTGG TTGTTGAATGATGTTGGGAACTATGTACTTTGTGACTTTGG < 41bp 1 0.11563220066483 1 0.164749205112457 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP2K ENSG00000138756 CDS Human protein_coding chr4:79766114 chr4:79766107 nonsynonymous SNV 0.986 0 14 hm5C_associated_SNPs_27990 0 0 1 1 2 BMP2K chr4:79766203 5'GT 79766203 Upstream 97bp
chr8 68074148 68074148 1 + C T LUAD 68074141 + 68074121 68074161 41 GTTGACAGCATCATACGTTCCTTTATTCATGTATGTACTTT GTTGACAGCATCATACGTTCCTTTATTTATGTATGTACTTT < 41bp 1 0.206125878822731 1 0.0374999940395355 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68074141 chr8:68074148 nonsynonymous SNV 0.988 1 28 hm5C_associated_SNPs_27991 0 0 0 0 1 CSPP1 chr8:68074150 5'GT 68074150 Upstream 3bp
chr17 78349667 78349667 1 + A T LUAD 78349659 + 78349639 78349679 41 CCCACAATGCAAGCCTCCACCCCACGCCAGAGGTGAGTAAC CCCACAATGCAAGCCTCCACCCCACGCCTGAGGTGAGTAAC < 41bp 1 0.0240974254442913 1 0.194209218025208 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78349659 chr17:78349667 synonymous SNV . 0 29 hm5C_associated_SNPs_27992 0 0 1 0 1 RNF213 chr17:78349670 5'GT 78349670 Upstream 4bp
chr1 93998552 93998552 1 + G A LUAD 93998568 + 93998548 93998588 41 GAACGCAAAGTTATTCCCATCATTTCAAAATGTTTGGAAGG GAACACAAAGTTATTCCCATCATTTCAAAATGTTTGGAAGG < 41bp 1 0.0472950721479178 1 0.128091394901276 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FNBP1L ENSG00000137942 CDS Human protein_coding chr1:93998568 chr1:93998552 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_27994 0 0 1 0 1 FNBP1L chr1:93998479 3'AG 93998479 Downstream 74bp
chr16 68109324 68109324 1 + G T LUAD 68109341 + 68109321 68109361 41 CAGGCTCTCAGCCAAGACTTCAGAGCAGACAGGGGAGCCAG CAGTCTCTCAGCCAAGACTTCAGAGCAGACAGGGGAGCCAG < 41bp 1 0.645734697719312 1 0.559820234775543 experiment 0.708530604561377 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68109341 chr16:68109324 nonsynonymous SNV 0.004 0 4 hm5C_associated_SNPs_27996 0 0 1 0 2 DUS2 chr16:68109258 3'AG 68109258 Downstream 67bp
chr16 68109324 68109324 1 + G T LUAD 68109341 + 68109321 68109361 41 CAGGCTCTCAGCCAAGACTTCAGAGCAGACAGGGGAGCCAG CAGTCTCTCAGCCAAGACTTCAGAGCAGACAGGGGAGCCAG < 41bp 1 0.645734697719312 1 0.559820234775543 experiment 0.708530604561377 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68109341 chr16:68109324 nonsynonymous SNV 0.004 0 4 hm5C_associated_SNPs_27996 0 0 1 0 2 DUS2 chr16:68109407 5'GT 68109407 Upstream 84bp
chr16 30740307 30740307 1 + G T LUAD 30740289 + 30740269 30740309 41 TTTTTCTCTCACCCCCAGGACTCCCTGGAGGAAAAGCGGAA TTTTTCTCTCACCCCCAGGACTCCCTGGAGGAAAAGCGTAA < 41bp 1 0.0639513153209551 1 0.123671770095825 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30740289 chr16:30740307 synonymous SNV . 0 39 hm5C_associated_SNPs_27997 0 0 1 0 1 SRCAP chr16:30740287 3'AG 30740287 Downstream 21bp
chr8 121259925 121259925 1 + C T LUAD 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTACGTGGGACCCTCCATCTTCCCCGGTGAAAGGCTATA < 41bp 1 0.0758572258608205 1 0.122750818729401 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259925 synonymous SNV . 0 16 hm5C_associated_SNPs_27999 0 0 0 0 2 COL14A1 chr8:121259852 3'AG 121259852 Downstream 74bp
chr8 121259925 121259925 1 + C T LUAD 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTACGTGGGACCCTCCATCTTCCCCGGTGAAAGGCTATA < 41bp 1 0.0758572258608205 1 0.122750818729401 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259925 synonymous SNV . 0 16 hm5C_associated_SNPs_27999 0 0 0 0 2 COL14A1 chr8:121259974 5'GT 121259974 Upstream 50bp
chr8 121259925 121259925 1 + C T LUAD 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGACCCTCCATCTTCCCCGGTGAAAGGCTATAGAAT < 41bp 1 0.34233100998217 1 0.135243088006973 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259925 synonymous SNV . 0 12 hm5C_associated_SNPs_28000 0 0 0 0 2 COL14A1 chr8:121259852 3'AG 121259852 Downstream 74bp
chr8 121259925 121259925 1 + C T LUAD 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGACCCTCCATCTTCCCCGGTGAAAGGCTATAGAAT < 41bp 1 0.34233100998217 1 0.135243088006973 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259925 synonymous SNV . 0 12 hm5C_associated_SNPs_28000 0 0 0 0 2 COL14A1 chr8:121259974 5'GT 121259974 Upstream 50bp
chr10 7745435 7745435 1 + T G LUAD 7745438 + 7745418 7745458 41 TTTCATCTGCTTCTTTCTTTCTGAAGTATCAGGCTTCGAAA TTTCATCTGCTTCTTTCGTTCTGAAGTATCAGGCTTCGAAA < 41bp 1 0.700421580279831 1 0.668948948383331 experiment 0.599156839440338 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7745438 chr10:7745435 nonsynonymous SNV 0.063 1 18 hm5C_associated_SNPs_28003 0 0 1 0 1 ITIH2 chr10:7745481 5'GT 7745481 Upstream 47bp
chr10 70726924 70726924 1 + A T LUAD 70726923 + 70726903 70726943 41 TGGATATGGGATTTGCTGATCAAGTGGAAGAGATTTTAAGT TGGATATGGGATTTGCTGATCTAGTGGAAGAGATTTTAAGT < 41bp 1 0.470719223825682 1 0.330955415964127 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX21 ENSG00000165732 CDS Human protein_coding chr10:70726923 chr10:70726924 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_28006 0 0 1 0 1 DDX21 chr10:70726959 5'GT 70726959 Upstream 36bp
chr1 36358858 36358858 1 + T C LUAD 36358839 + 36358819 36358859 41 CTGTTCCCTTGGAGTCTGTGCAAGCCCTGGATGTGGCCATG CTGTTCCCTTGGAGTCTGTGCAAGCCCTGGATGTGGCCACG < 41bp 1 0.298560951445638 1 0.660102427005768 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGO1 ENSG00000092847 CDS Human protein_coding chr1:36358839 chr1:36358858 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_28007 0 0 1 0 1 AGO1 chr1:36358879 5'GT 36358879 Upstream 22bp
chrX 106046140 106046140 1 + G A LUAD 106046129 + 106046109 106046149 41 TTCTGAAAAATGCGCTGAAGCTGTGGCTGATGGAAAGGTCC TTCTGAAAAATGCGCTGAAGCTGTGGCTGATAGAAAGGTCC < 41bp 1 0.551697810724607 1 0.319975048303604 experiment 0.896604378550787 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TBC1D8B ENSG00000133138 CDS Human protein_coding chrX:106046129 chrX:106046140 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_28008 0 0 0 0 1 TBC1D8B chrX:106046213 5'GT 106046213 Upstream 74bp
chr17 78359421 78359421 1 + G T LUAD 78359407 + 78359387 78359427 41 ATGGAACAAACTGAGGAGATCGCTTGAGACGAACGGTTAGT ATGGAACAAACTGAGGAGATCGCTTGAGACGAACTGTTAGT < 41bp 1 0.043431755148163 1 0.388231158256531 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78359407 chr17:78359421 nonsynonymous SNV 0.010 4 35 hm5C_associated_SNPs_28010 0 0 1 0 2 RNF213 chr17:78359338 3'AG 78359338 Downstream 84bp
chr17 78359421 78359421 1 + G T LUAD 78359407 + 78359387 78359427 41 ATGGAACAAACTGAGGAGATCGCTTGAGACGAACGGTTAGT ATGGAACAAACTGAGGAGATCGCTTGAGACGAACTGTTAGT < 41bp 1 0.043431755148163 1 0.388231158256531 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78359407 chr17:78359421 nonsynonymous SNV 0.010 4 35 hm5C_associated_SNPs_28010 0 0 1 0 2 RNF213 chr17:78359421 5'GT 78359421 Upstream 1bp
chr3 42242491 42242491 1 + G A LUAD 42242472 + 42242452 42242492 41 CCCCGGTCCAGCTTCTACGGCAGCGACATAGGCAACGTCGT CCCCGGTCCAGCTTCTACGGCAGCGACATAGGCAACGTCAT < 41bp 1 0.357747682166051 1 0.0827156603336334 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42242472 chr3:42242491 nonsynonymous SNV 0.226 0 40 hm5C_associated_SNPs_28011 0 0 0 0 1 TRAK1 chr3:42242546 5'GT 42242546 Upstream 56bp
chr13 76393660 76393660 1 + G T LUAD 76393641 + 76393621 76393661 41 TGAGAAGTCTAAGAGAAGCTCTAAGACGTTTAAGGAAATGC TGAGAAGTCTAAGAGAAGCTCTAAGACGTTTAAGGAAATTC < 41bp 1 0.302049235699495 1 0.236374050378799 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76393641 chr13:76393660 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_28017 0 0 1 0 1 LMO7 chr13:76393671 5'GT 76393671 Upstream 12bp
chr19 8321918 8321918 1 + C G LUAD 8321902 + 8321882 8321922 41 CCTTCTCCTACAGTGCCAACCTGCTGCGCATTGGCTCTCTG CCTTCTCCTACAGTGCCAACCTGCTGCGCATTGGCTGTCTG < 41bp 1 0.478461463402045 1 0.396961510181427 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS4 ENSG00000090661 CDS Human protein_coding chr19:8321902 chr19:8321918 nonsynonymous SNV 0.994 5 37 hm5C_associated_SNPs_28018 0 0 0 0 2 CERS4 chr19:8321833 3'AG 8321833 Downstream 86bp
chr19 8321918 8321918 1 + C G LUAD 8321902 + 8321882 8321922 41 CCTTCTCCTACAGTGCCAACCTGCTGCGCATTGGCTCTCTG CCTTCTCCTACAGTGCCAACCTGCTGCGCATTGGCTGTCTG < 41bp 1 0.478461463402045 1 0.396961510181427 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS4 ENSG00000090661 CDS Human protein_coding chr19:8321902 chr19:8321918 nonsynonymous SNV 0.994 5 37 hm5C_associated_SNPs_28018 0 0 0 0 2 CERS4 chr19:8321961 5'GT 8321961 Upstream 44bp
chr16 90028216 90028216 1 + G T LUAD 90028230 + 90028210 90028250 41 TGGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAA TGGAACTACCTGGCTGTGATCCCTGCACGCGTTGTACACAA < 41bp 1 0.379676025534423 1 0.245810121297836 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028230 chr16:90028216 nonsynonymous SNV 0.959 4 7 hm5C_associated_SNPs_28019 0 0 1 0 2 DEF8 chr16:90028145 3'AG 90028145 Downstream 72bp
chr16 90028216 90028216 1 + G T LUAD 90028230 + 90028210 90028250 41 TGGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAA TGGAACTACCTGGCTGTGATCCCTGCACGCGTTGTACACAA < 41bp 1 0.379676025534423 1 0.245810121297836 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028230 chr16:90028216 nonsynonymous SNV 0.959 4 7 hm5C_associated_SNPs_28019 0 0 1 0 2 DEF8 chr16:90028272 5'GT 90028272 Upstream 57bp
chr16 90028216 90028216 1 + G T LUAD 90028231 + 90028211 90028251 41 GGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAAC GGAACTACCTGGCTGTGATCCCTGCACGCGTTGTACACAAC < 41bp 1 0.106294830335336 1 0.252038300037384 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028231 chr16:90028216 nonsynonymous SNV 0.959 4 6 hm5C_associated_SNPs_28020 0 0 1 0 2 DEF8 chr16:90028145 3'AG 90028145 Downstream 72bp
chr16 90028216 90028216 1 + G T LUAD 90028231 + 90028211 90028251 41 GGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAAC GGAACTACCTGGCTGTGATCCCTGCACGCGTTGTACACAAC < 41bp 1 0.106294830335336 1 0.252038300037384 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028231 chr16:90028216 nonsynonymous SNV 0.959 4 6 hm5C_associated_SNPs_28020 0 0 1 0 2 DEF8 chr16:90028272 5'GT 90028272 Upstream 57bp
chr5 145849210 145849210 1 + A G LUAD 145849206 + 145849186 145849226 41 AGCTGGAGCAACAGCAGTTTCTGAATGGACTGAATATAAAA AGCTGGAGCAACAGCAGTTTCTGAGTGGACTGAATATAAAA < 41bp 1 0.670761083244902 1 0.491458207368851 experiment 0.658477833510196 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145849206 chr5:145849210 synonymous SNV . 0 25 hm5C_associated_SNPs_28022 0 0 1 0 1 TCERG1 chr5:145849307 5'GT 145849307 Upstream 98bp
chr1 33957289 33957289 1 + C T LUAD 33957276 + 33957256 33957296 41 GGGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTC GGGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTTCAGAGTC < 41bp 1 0.431463905765977 1 0.308873653411865 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957276 chr1:33957289 synonymous SNV . 0 34 hm5C_associated_SNPs_28023 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 14bp
chr1 33957289 33957289 1 + C T LUAD 33957277 + 33957257 33957297 41 GGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCG GGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTTCAGAGTCG < 41bp 1 0.222559392508184 1 0.102174758911133 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957277 chr1:33957289 synonymous SNV . 0 33 hm5C_associated_SNPs_28024 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 14bp
chr1 33957289 33957289 1 + C T LUAD 33957278 + 33957258 33957298 41 GGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGT GGCCCAGGATTGCAGGGGCCCCAGCTCTGTTTCAGAGTCGT < 41bp 1 0.119416208480152 1 0.102094978094101 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957278 chr1:33957289 synonymous SNV . 0 32 hm5C_associated_SNPs_28025 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 14bp
chr1 33957289 33957289 1 + C T LUAD 33957279 + 33957259 33957299 41 GCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGTA GCCCAGGATTGCAGGGGCCCCAGCTCTGTTTCAGAGTCGTA < 41bp 1 0.361638709488984 1 0.17216283082962 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957279 chr1:33957289 synonymous SNV . 0 31 hm5C_associated_SNPs_28026 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 14bp
chr14 102455115 102455115 1 + G C LUAD 102455097 + 102455077 102455117 41 TGAGAGCTTGGACGCAGGTTCTTCTTGGACAAGCTGAAGAT TGAGAGCTTGGACGCAGGTTCTTCTTGGACAAGCTGAACAT < 41bp 1 0.0799498467597432 1 0.0739034712314606 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102455097 chr14:102455115 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_28027 0 0 1 0 2 DYNC1H1 chr14:102455040 3'AG 102455040 Downstream 76bp
chr14 102455115 102455115 1 + G C LUAD 102455097 + 102455077 102455117 41 TGAGAGCTTGGACGCAGGTTCTTCTTGGACAAGCTGAAGAT TGAGAGCTTGGACGCAGGTTCTTCTTGGACAAGCTGAACAT < 41bp 1 0.0799498467597432 1 0.0739034712314606 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102455097 chr14:102455115 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_28027 0 0 1 0 2 DYNC1H1 chr14:102455189 5'GT 102455189 Upstream 75bp
chrX 152959710 152959710 1 + C G LUAD 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG CATCGATCTCTCGATGGTGACTGATGTGAGTGGGGTGGGGG < 41bp 1 0.371403044367822 1 0.121910601854324 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959710 synonymous SNV . 0 13 hm5C_associated_SNPs_28030 0 0 1 4 1 SLC6A8 chrX:152959722 5'GT 152959722 Upstream 13bp
chr7 129093097 129093097 1 + G T LUAD 129093106 + 129093086 129093126 41 ATTCAGAGGTCGATGTGCTACACTGGTCCAGGTACAACTGC ATTCAGAGGTCTATGTGCTACACTGGTCCAGGTACAACTGC < 41bp 1 0.543120591228141 1 0.100315481424332 experiment 0.913758817543719 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129093106 chr7:129093097 nonsynonymous SNV 0.996 4 12 hm5C_associated_SNPs_28031 0 0 1 0 2 STRIP2 chr7:129093068 3'AG 129093068 Downstream 30bp
chr7 129093097 129093097 1 + G T LUAD 129093106 + 129093086 129093126 41 ATTCAGAGGTCGATGTGCTACACTGGTCCAGGTACAACTGC ATTCAGAGGTCTATGTGCTACACTGGTCCAGGTACAACTGC < 41bp 1 0.543120591228141 1 0.100315481424332 experiment 0.913758817543719 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129093106 chr7:129093097 nonsynonymous SNV 0.996 4 12 hm5C_associated_SNPs_28031 0 0 1 0 2 STRIP2 chr7:129093188 5'GT 129093188 Upstream 92bp
chr6 7572226 7572226 1 + G T LUAD 7572244 + 7572224 7572264 41 AGGATGACTCTCAAAAACCTCCCTCTAGCAGACCAGGGATC AGTATGACTCTCAAAAACCTCCCTCTAGCAGACCAGGGATC < 41bp 1 0.043953698249716 1 0.110135197639465 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572244 chr6:7572226 nonsynonymous SNV 0.334 4 3 hm5C_associated_SNPs_28032 0 0 1 0 1 DSP chr6:7572301 5'GT 7572301 Upstream 76bp
chr6 133844274 133844274 1 + G C LUAD 133844283 + 133844263 133844303 41 TAGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTG TAGTTTAGGAGCTGCTTTCCCCATTGAGAATATTTACAGTG < 41bp 1 0.0813952956978992 1 0.387649446725845 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844283 chr6:133844274 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_28033 0 0 0 0 2 EYA4 chr6:133844194 3'AG 133844194 Downstream 81bp
chr6 133844274 133844274 1 + G C LUAD 133844283 + 133844263 133844303 41 TAGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTG TAGTTTAGGAGCTGCTTTCCCCATTGAGAATATTTACAGTG < 41bp 1 0.0813952956978992 1 0.387649446725845 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844283 chr6:133844274 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_28033 0 0 0 0 2 EYA4 chr6:133844315 5'GT 133844315 Upstream 42bp
chr6 133844274 133844274 1 + G C LUAD 133844284 + 133844264 133844304 41 AGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTGC AGTTTAGGAGCTGCTTTCCCCATTGAGAATATTTACAGTGC < 41bp 1 0.0819639550787385 1 0.137233525514603 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844284 chr6:133844274 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_28034 0 0 0 0 2 EYA4 chr6:133844194 3'AG 133844194 Downstream 81bp
chr6 133844274 133844274 1 + G C LUAD 133844284 + 133844264 133844304 41 AGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTGC AGTTTAGGAGCTGCTTTCCCCATTGAGAATATTTACAGTGC < 41bp 1 0.0819639550787385 1 0.137233525514603 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844284 chr6:133844274 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_28034 0 0 0 0 2 EYA4 chr6:133844315 5'GT 133844315 Upstream 42bp
chr6 139498103 139498103 1 + G T LUAD 139498084 + 139498064 139498104 41 TCTGTTTCCCCCAGGCCCGCCTGAACTGTAAGCACTGTGGG TCTGTTTCCCCCAGGCCCGCCTGAACTGTAAGCACTGTGTG < 41bp 1 0.55467169452325 1 0.162654310464859 experiment 0.890656610953501 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECA ENSG00000112406 CDS Human protein_coding chr6:139498084 chr6:139498103 nonsynonymous SNV 0.998 3 40 hm5C_associated_SNPs_28035 0 0 1 0 1 HECA chr6:139498078 3'AG 139498078 Downstream 26bp
chr22 39125575 39125575 1 + G T LUAD 39125568 + 39125548 39125588 41 ACGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGT ACGAAACGAGACGAGGGGGGCCCGTCTTGTGGGCCAGCAGT < 41bp 1 0.124928522157304 1 0.214777648448944 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125568 chr22:39125575 nonsynonymous SNV 0.008 1 28 hm5C_associated_SNPs_28036 0 0 1 0 1 GTPBP1 chr22:39125667 5'GT 39125667 Upstream 93bp
chr22 39125575 39125575 1 + G T LUAD 39125569 + 39125549 39125589 41 CGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTA CGAAACGAGACGAGGGGGGCCCGTCTTGTGGGCCAGCAGTA < 41bp 1 0.0454170747276272 1 0.186276614665985 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125569 chr22:39125575 nonsynonymous SNV 0.008 1 27 hm5C_associated_SNPs_28037 0 0 1 0 1 GTPBP1 chr22:39125667 5'GT 39125667 Upstream 93bp
chr22 39125575 39125575 1 + G T LUAD 39125570 + 39125550 39125590 41 GAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTAG GAAACGAGACGAGGGGGGCCCGTCTTGTGGGCCAGCAGTAG < 41bp 1 0.143733783414318 1 0.347305238246918 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125570 chr22:39125575 nonsynonymous SNV 0.008 1 26 hm5C_associated_SNPs_28038 0 0 1 0 1 GTPBP1 chr22:39125667 5'GT 39125667 Upstream 93bp
chr11 33358645 33358645 1 + G T LUAD 33358660 + 33358640 33358680 41 CTCAAGGTTTGCCAGGAGAACAGTTGTTAAATGTGGGTACT CTCAATGTTTGCCAGGAGAACAGTTGTTAAATGTGGGTACT < 41bp 1 0.188070749936169 1 0.169177681207657 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HIPK3 ENSG00000110422 CDS Human protein_coding chr11:33358660 chr11:33358645 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_28039 0 0 1 1 2 HIPK3 chr11:33358621 3'AG 33358621 Downstream 25bp
chr11 33358645 33358645 1 + G T LUAD 33358660 + 33358640 33358680 41 CTCAAGGTTTGCCAGGAGAACAGTTGTTAAATGTGGGTACT CTCAATGTTTGCCAGGAGAACAGTTGTTAAATGTGGGTACT < 41bp 1 0.188070749936169 1 0.169177681207657 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HIPK3 ENSG00000110422 CDS Human protein_coding chr11:33358660 chr11:33358645 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_28039 0 0 1 1 2 HIPK3 chr11:33358740 5'GT 33358740 Upstream 96bp
chr12 93968550 93968550 1 + G T LUAD 93968564 + 93968544 93968584 41 AAAAGAGGCACCAGAAGGAACTTTCTTGATTAGAGATAGCT AAAAGATGCACCAGAAGGAACTTTCTTGATTAGAGATAGCT < 41bp 1 0.0536564546183719 1 0.0826861560344696 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SOCS2 ENSG00000120833 CDS Human protein_coding chr12:93968564 chr12:93968550 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_28040 0 0 0 0 1 SOCS2 chr12:93968498 3'AG 93968498 Downstream 53bp
chr10 17276749 17276749 1 + C T LUAD 17276740 + 17276720 17276760 41 GGAACAATGACGCCCTGCGCCAGGCAAAGCAGGAGTCCACT GGAACAATGACGCCCTGCGCCAGGCAAAGTAGGAGTCCACT < 41bp 1 0.406718208694829 1 0.680987179279327 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276740 chr10:17276749 stopgain 1.000 1 30 hm5C_associated_SNPs_28041 0 0 1 0 2 VIM chr10:17276692 3'AG 17276692 Downstream 58bp
chr10 17276749 17276749 1 + C T LUAD 17276740 + 17276720 17276760 41 GGAACAATGACGCCCTGCGCCAGGCAAAGCAGGAGTCCACT GGAACAATGACGCCCTGCGCCAGGCAAAGTAGGAGTCCACT < 41bp 1 0.406718208694829 1 0.680987179279327 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276740 chr10:17276749 stopgain 1.000 1 30 hm5C_associated_SNPs_28041 0 0 1 0 2 VIM chr10:17276817 5'GT 17276817 Upstream 69bp
chr10 17276749 17276749 1 + C T LUAD 17276757 + 17276737 17276777 41 CGCCAGGCAAAGCAGGAGTCCACTGAGTACCGGAGACAGGT CGCCAGGCAAAGTAGGAGTCCACTGAGTACCGGAGACAGGT < 41bp 1 0.281348155503258 1 0.108192771673203 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276757 chr10:17276749 stopgain 1.000 1 13 hm5C_associated_SNPs_28042 0 0 1 0 2 VIM chr10:17276692 3'AG 17276692 Downstream 58bp
chr10 17276749 17276749 1 + C T LUAD 17276757 + 17276737 17276777 41 CGCCAGGCAAAGCAGGAGTCCACTGAGTACCGGAGACAGGT CGCCAGGCAAAGTAGGAGTCCACTGAGTACCGGAGACAGGT < 41bp 1 0.281348155503258 1 0.108192771673203 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276757 chr10:17276749 stopgain 1.000 1 13 hm5C_associated_SNPs_28042 0 0 1 0 2 VIM chr10:17276817 5'GT 17276817 Upstream 69bp
chr11 4156359 4156359 1 + G T LUAD 4156342 + 4156322 4156362 41 AAATTCCTGATGACCTGAAGCAACTTTATAAAACTGTGTGG AAATTCCTGATGACCTGAAGCAACTTTATAAAACTGTTTGG < 41bp 1 0.299138097495248 1 0.122512102127075 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RRM1 ENSG00000167325 CDS Human protein_coding chr11:4156342 chr11:4156359 synonymous SNV . 0 38 hm5C_associated_SNPs_28045 0 0 1 0 1 RRM1 chr11:4156312 3'AG 4156312 Downstream 48bp
chr14 102918939 102918939 1 + G T LUAD 102918952 + 102918932 102918972 41 TGCACTGGACCAGGCTGGACCTCTCCCAGCTAGGTACGGCC TGCACTGTACCAGGCTGGACCTCTCCCAGCTAGGTACGGCC < 41bp 1 0.0676863608839626 1 0.290285050868988 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102918952 chr14:102918939 nonsynonymous SNV 0.996 4 8 hm5C_associated_SNPs_28046 0 0 1 0 1 TECPR2 chr14:102918964 5'GT 102918964 Upstream 26bp
chr19 48179129 48179129 1 + G A LUAD 48179146 + 48179126 48179166 41 CTGGATAATCCCGGGGAGGCCCAAAGTGCCTTCTATGAAGG CTGAATAATCCCGGGGAGGCCCAAAGTGCCTTCTATGAAGG < 41bp 1 0.143668345823289 1 0.657753050327301 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BICRA ENSG00000063169 CDS Human protein_coding chr19:48179146 chr19:48179129 nonsynonymous SNV 0.995 2 4 hm5C_associated_SNPs_28048 0 0 1 0 2 BICRA chr19:48179108 3'AG 48179108 Downstream 22bp
chr19 48179129 48179129 1 + G A LUAD 48179146 + 48179126 48179166 41 CTGGATAATCCCGGGGAGGCCCAAAGTGCCTTCTATGAAGG CTGAATAATCCCGGGGAGGCCCAAAGTGCCTTCTATGAAGG < 41bp 1 0.143668345823289 1 0.657753050327301 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BICRA ENSG00000063169 CDS Human protein_coding chr19:48179146 chr19:48179129 nonsynonymous SNV 0.995 2 4 hm5C_associated_SNPs_28048 0 0 1 0 2 BICRA chr19:48179173 5'GT 48179173 Upstream 45bp
chr11 46747442 46747442 1 + G T LUAD 46747436 + 46747416 46747456 41 TCAAGTCACTGTAGCGATGACTCCACGCTCCGAAGGCTCCA TCAAGTCACTGTAGCGATGACTCCACTCTCCGAAGGCTCCA < 41bp 1 0.724368159248523 1 0.962000131607056 experiment 0.551263681502954 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control F2 ENSG00000180210 CDS Human protein_coding chr11:46747436 chr11:46747442 nonsynonymous SNV 0.104 1 27 hm5C_associated_SNPs_28049 0 0 1 0 1 F2 chr11:46747409 3'AG 46747409 Downstream 34bp
chr2 128184758 128184758 1 + C A LUAD 128184754 + 128184734 128184774 41 CCCCTCCTGGGTGCTGACAGCGGCCCACTGCATGGATGAGT CCCCTCCTGGGTGCTGACAGCGGCACACTGCATGGATGAGT < 41bp 1 0.750142072971757 1 0.599756121635437 experiment 0.499715854056486 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128184754 chr2:128184758 synonymous SNV . 0 25 hm5C_associated_SNPs_28050 0 0 1 0 2 PROC chr2:128184681 3'AG 128184681 Downstream 78bp
chr2 128184758 128184758 1 + C A LUAD 128184754 + 128184734 128184774 41 CCCCTCCTGGGTGCTGACAGCGGCCCACTGCATGGATGAGT CCCCTCCTGGGTGCTGACAGCGGCACACTGCATGGATGAGT < 41bp 1 0.750142072971757 1 0.599756121635437 experiment 0.499715854056486 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128184754 chr2:128184758 synonymous SNV . 0 25 hm5C_associated_SNPs_28050 0 0 1 0 2 PROC chr2:128184798 5'GT 128184798 Upstream 41bp
chr19 41758860 41758860 1 + G A LUAD 41758850 + 41758830 41758870 41 ACACAGCTTCCTCCTCTATTCCCGGCTCGGGGACCAGCCAG ACACAGCTTCCTCCTCTATTCCCGGCTCGGAGACCAGCCAG < 41bp 1 0.64263954654224 1 0.401906371116638 experiment 0.71472090691552 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AXL ENSG00000167601 CDS Human protein_coding chr19:41758850 chr19:41758860 synonymous SNV . 0 31 hm5C_associated_SNPs_28051 0 0 0 0 1 AXL chr19:41758872 5'GT 41758872 Upstream 13bp
chr19 41758860 41758860 1 + G A LUAD 41758851 + 41758831 41758871 41 CACAGCTTCCTCCTCTATTCCCGGCTCGGGGACCAGCCAGT CACAGCTTCCTCCTCTATTCCCGGCTCGGAGACCAGCCAGT < 41bp 1 0.19001753902099 1 0.163288235664368 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 CDS Human protein_coding chr19:41758851 chr19:41758860 synonymous SNV . 0 30 hm5C_associated_SNPs_28052 0 0 0 0 1 AXL chr19:41758872 5'GT 41758872 Upstream 13bp
chr17 64785039 64785039 1 + G T LUAD 64785043 + 64785023 64785063 41 CATGCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAA CATGCCTTCTTCCGGATGATCGACTGGGAAAAACTGGAGAA < 41bp 1 0.364704263854856 1 0.383940428495407 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785043 chr17:64785039 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_28054 0 0 1 0 2 PRKCA chr17:64784957 3'AG 64784957 Downstream 83bp
chr17 64785039 64785039 1 + G T LUAD 64785043 + 64785023 64785063 41 CATGCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAA CATGCCTTCTTCCGGATGATCGACTGGGAAAAACTGGAGAA < 41bp 1 0.364704263854856 1 0.383940428495407 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785043 chr17:64785039 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_28054 0 0 1 0 2 PRKCA chr17:64785097 5'GT 64785097 Upstream 59bp
chr17 64785039 64785039 1 + G T LUAD 64785046 + 64785026 64785066 41 GCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAACAG GCCTTCTTCCGGATGATCGACTGGGAAAAACTGGAGAACAG < 41bp 1 0.562413912411769 1 0.677237391471863 experiment 0.875172175176462 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785046 chr17:64785039 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_28055 0 0 1 0 2 PRKCA chr17:64784957 3'AG 64784957 Downstream 83bp
chr17 64785039 64785039 1 + G T LUAD 64785046 + 64785026 64785066 41 GCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAACAG GCCTTCTTCCGGATGATCGACTGGGAAAAACTGGAGAACAG < 41bp 1 0.562413912411769 1 0.677237391471863 experiment 0.875172175176462 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785046 chr17:64785039 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_28055 0 0 1 0 2 PRKCA chr17:64785097 5'GT 64785097 Upstream 59bp
chr1 118477140 118477140 1 + C T LUAD 118477159 + 118477139 118477179 41 GCCCCTCCCCAGATGGGCTACACTTAGCTGTTGGGTATGAG GTCCCTCCCCAGATGGGCTACACTTAGCTGTTGGGTATGAG < 41bp 1 0.149923715287321 1 0.0421774089336395 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient WDR3 ENSG00000065183 CDS Human protein_coding chr1:118477159 chr1:118477140 synonymous SNV . 0 2 hm5C_associated_SNPs_28056 0 0 1 0 1 WDR3 chr1:118477096 3'AG 118477096 Downstream 45bp
chr4 166254679 166254679 1 + G C LUAD 166254694 + 166254674 166254714 41 CATGGGGATCCCTTATAGTTCATGAAGCCCTTTATTTCTTA CATGGCGATCCCTTATAGTTCATGAAGCCCTTTATTTCTTA < 41bp 1 0.585163492368244 1 0.0655241906642914 experiment 0.829673015263513 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MSMO1 ENSG00000052802 CDS Human protein_coding chr4:166254694 chr4:166254679 nonsynonymous SNV 0.997 3 6 hm5C_associated_SNPs_28058 0 0 1 0 1 MSMO1 chr4:166254777 5'GT 166254777 Upstream 99bp
chr2 211465353 211465353 1 + A T LUAD 211465360 + 211465340 211465380 41 AGTTGAGTCCATTATGGCTACGGAAGACAGGCAGCTGTTTT AGTTGAGTCCATTTTGGCTACGGAAGACAGGCAGCTGTTTT < 41bp 1 0.544140546191612 1 0.73807966709137 experiment 0.911718907616776 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPS1 ENSG00000021826 CDS Human protein_coding chr2:211465360 chr2:211465353 nonsynonymous SNV 0.998 3 14 hm5C_associated_SNPs_28059 0 0 1 0 2 CPS1 chr2:211465279 3'AG 211465279 Downstream 75bp
chr2 211465353 211465353 1 + A T LUAD 211465360 + 211465340 211465380 41 AGTTGAGTCCATTATGGCTACGGAAGACAGGCAGCTGTTTT AGTTGAGTCCATTTTGGCTACGGAAGACAGGCAGCTGTTTT < 41bp 1 0.544140546191612 1 0.73807966709137 experiment 0.911718907616776 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPS1 ENSG00000021826 CDS Human protein_coding chr2:211465360 chr2:211465353 nonsynonymous SNV 0.998 3 14 hm5C_associated_SNPs_28059 0 0 1 0 2 CPS1 chr2:211465436 5'GT 211465436 Upstream 84bp
chr5 176710798 176710798 1 + T C LUAD 176710791 + 176710771 176710811 41 TTCTTTTGGAATTCTAGGACCGAATCATTGATGCTGGTCCC TTCTTTTGGAATTCTAGGACCGAATCACTGATGCTGGTCCC < 41bp 1 0.0834039563393069 1 0.17665821313858 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176710791 chr5:176710798 nonsynonymous SNV 1.000 5 28 hm5C_associated_SNPs_28061 0 0 1 0 1 NSD1 chr5:176710788 3'AG 176710788 Downstream 11bp
chr9 139228913 139228913 1 + G A LUAD 139228915 + 139228895 139228935 41 TCTGCACAGGATGGAGGCGTCCTGCCTAGAGCTGGCGCTGG TCTGCACAGGATGGAGGCATCCTGCCTAGAGCTGGCGCTGG < 41bp 1 0.198739155843583 1 0.163270026445389 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139228915 chr9:139228913 synonymous SNV . 0 19 hm5C_associated_SNPs_28063 0 0 0 0 1 GPSM1 chr9:139228904 3'AG 139228904 Downstream 10bp
chr9 139228913 139228913 1 + G A LUAD 139228916 + 139228896 139228936 41 CTGCACAGGATGGAGGCGTCCTGCCTAGAGCTGGCGCTGGA CTGCACAGGATGGAGGCATCCTGCCTAGAGCTGGCGCTGGA < 41bp 1 0.561939127381422 1 0.44281131029129 experiment 0.876121745237156 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139228916 chr9:139228913 synonymous SNV . 0 18 hm5C_associated_SNPs_28064 0 0 0 0 1 GPSM1 chr9:139228904 3'AG 139228904 Downstream 10bp
chr17 59161843 59161843 1 + C T LUAD 59161840 + 59161820 59161860 41 CATTGCAGGATCCAGCCAGTCCGCTCTGACCCCGTCAGCAT CATTGCAGGATCCAGCCAGTCCGTTCTGACCCCGTCAGCAT < 41bp 1 0.143253932400608 1 0.0279829502105713 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BCAS3 ENSG00000141376 CDS Human protein_coding chr17:59161840 chr17:59161843 synonymous SNV . 0 24 hm5C_associated_SNPs_28065 0 0 1 0 2 BCAS3 chr17:59161828 3'AG 59161828 Downstream 16bp
chr17 59161843 59161843 1 + C T LUAD 59161840 + 59161820 59161860 41 CATTGCAGGATCCAGCCAGTCCGCTCTGACCCCGTCAGCAT CATTGCAGGATCCAGCCAGTCCGTTCTGACCCCGTCAGCAT < 41bp 1 0.143253932400608 1 0.0279829502105713 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BCAS3 ENSG00000141376 CDS Human protein_coding chr17:59161840 chr17:59161843 synonymous SNV . 0 24 hm5C_associated_SNPs_28065 0 0 1 0 2 BCAS3 chr17:59161925 5'GT 59161925 Upstream 83bp
chr19 55898026 55898026 1 + G A LUAD 55898006 + 55897986 55898026 41 ATTCACCGCAAGACTGTGGGCGTGGAGCCGGCAGCCGACGG ATTCACCGCAAGACTGTGGGCGTGGAGCCGGCAGCCGACGA < 41bp 1 0.658465003705344 1 0.578602850437164 experiment 0.683069992589313 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55898006 chr19:55898026 nonsynonymous SNV 0.939 2 41 hm5C_associated_SNPs_28070 0 0 1 0 2 RPL28 chr19:55897938 3'AG 55897938 Downstream 89bp
chr19 55898026 55898026 1 + G A LUAD 55898006 + 55897986 55898026 41 ATTCACCGCAAGACTGTGGGCGTGGAGCCGGCAGCCGACGG ATTCACCGCAAGACTGTGGGCGTGGAGCCGGCAGCCGACGA < 41bp 1 0.658465003705344 1 0.578602850437164 experiment 0.683069992589313 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55898006 chr19:55898026 nonsynonymous SNV 0.939 2 41 hm5C_associated_SNPs_28070 0 0 1 0 2 RPL28 chr19:55898061 5'GT 55898061 Upstream 36bp
chr19 55898026 55898026 1 + G A LUAD 55898017 + 55897997 55898037 41 GACTGTGGGCGTGGAGCCGGCAGCCGACGGCAAAGGTGTCG GACTGTGGGCGTGGAGCCGGCAGCCGACGACAAAGGTGTCG < 41bp 1 0.510263303365646 1 0.46925213932991 experiment 0.979473393268709 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55898017 chr19:55898026 nonsynonymous SNV 0.939 2 30 hm5C_associated_SNPs_28071 0 0 1 0 2 RPL28 chr19:55897938 3'AG 55897938 Downstream 89bp
chr19 55898026 55898026 1 + G A LUAD 55898017 + 55897997 55898037 41 GACTGTGGGCGTGGAGCCGGCAGCCGACGGCAAAGGTGTCG GACTGTGGGCGTGGAGCCGGCAGCCGACGACAAAGGTGTCG < 41bp 1 0.510263303365646 1 0.46925213932991 experiment 0.979473393268709 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55898017 chr19:55898026 nonsynonymous SNV 0.939 2 30 hm5C_associated_SNPs_28071 0 0 1 0 2 RPL28 chr19:55898061 5'GT 55898061 Upstream 36bp
chr22 29695793 29695793 1 + A C LUAD 29695781 + 29695761 29695801 41 CCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG CCCTGGGGGGCCCCCTGGACCTTTGATGGAACCGATGGGAG < 41bp 1 0.468496182556478 1 0.308031558990479 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695781 chr22:29695793 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_28073 0 0 1 0 1 EWSR1 chr22:29695841 5'GT 29695841 Upstream 49bp
chr6 35438059 35438059 1 + C G LUAD 35438048 + 35438028 35438068 41 TAAATAAGGCAGGAAAGTTCCCTTCCCTGCTCACACACAAC TAAATAAGGCAGGAAAGTTCCCTTCCCTGCTGACACACAAC < 41bp 1 0.0281473076234127 1 0.120145678520203 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL10A ENSG00000198755 CDS Human protein_coding chr6:35438048 chr6:35438059 synonymous SNV . 0 32 hm5C_associated_SNPs_28074 0 0 1 0 1 RPL10A chr6:35438128 5'GT 35438128 Upstream 70bp
chr11 45926281 45926281 1 + C T LUAD 45926276 + 45926256 45926296 41 TTGTCACCTGTAGATTGCCACCACCCGCCGGCTCACCGTGC TTGTCACCTGTAGATTGCCACCACCTGCCGGCTCACCGTGC < 41bp 1 0.0521234134394098 1 0.043999046087265 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926276 chr11:45926281 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_28075 0 0 0 0 1 MAPK8IP1 chr11:45926269 3'AG 45926269 Downstream 13bp
chr11 45926281 45926281 1 + C T LUAD 45926280 + 45926260 45926300 41 CACCTGTAGATTGCCACCACCCGCCGGCTCACCGTGCACTT CACCTGTAGATTGCCACCACCTGCCGGCTCACCGTGCACTT < 41bp 1 0.257036028457905 1 0.0550582110881805 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926280 chr11:45926281 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_28076 0 0 0 0 1 MAPK8IP1 chr11:45926269 3'AG 45926269 Downstream 13bp
chr11 45926281 45926281 1 + C T LUAD 45926291 + 45926271 45926311 41 TGCCACCACCCGCCGGCTCACCGTGCACTTTAACCCGCCCT TGCCACCACCTGCCGGCTCACCGTGCACTTTAACCCGCCCT < 41bp 1 0.135963056681275 1 0.519873142242432 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926291 chr11:45926281 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_28077 0 0 0 0 1 MAPK8IP1 chr11:45926269 3'AG 45926269 Downstream 13bp
chr12 53412608 53412608 1 + G A LUAD 53412624 + 53412604 53412644 41 CGATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCA CGATAACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCA < 41bp 1 0.337633876094525 1 0.0738425254821777 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412624 chr12:53412608 nonsynonymous SNV 0.538 3 5 hm5C_associated_SNPs_28078 0 0 1 0 1 EIF4B chr12:53412582 3'AG 53412582 Downstream 27bp
chr12 53412608 53412608 1 + G A LUAD 53412626 + 53412606 53412646 41 ATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATC ATAACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATC < 41bp 1 0.0493862744958587 1 0.0510726869106293 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412626 chr12:53412608 nonsynonymous SNV 0.538 3 3 hm5C_associated_SNPs_28079 0 0 1 0 1 EIF4B chr12:53412582 3'AG 53412582 Downstream 27bp
chr8 26223870 26223870 1 + G A LUAD 26223855 + 26223835 26223875 41 ATGAATACCTCAGAAGTAAACTCTGTTCACTGTATGAAAAT ATGAATACCTCAGAAGTAAACTCTGTTCACTGTATAAAAAT < 41bp 1 0.314408806880272 1 0.118753254413605 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223855 chr8:26223870 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_28083 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 40bp
chr8 26223870 26223870 1 + G A LUAD 26223855 + 26223835 26223875 41 ATGAATACCTCAGAAGTAAACTCTGTTCACTGTATGAAAAT ATGAATACCTCAGAAGTAAACTCTGTTCACTGTATAAAAAT < 41bp 1 0.314408806880272 1 0.118753254413605 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223855 chr8:26223870 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_28083 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 53bp
chr8 26223870 26223870 1 + G A LUAD 26223857 + 26223837 26223877 41 GAATACCTCAGAAGTAAACTCTGTTCACTGTATGAAAATGA GAATACCTCAGAAGTAAACTCTGTTCACTGTATAAAAATGA < 41bp 1 0.0823041615584025 1 0.172660022974014 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223857 chr8:26223870 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_28084 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 40bp
chr8 26223870 26223870 1 + G A LUAD 26223857 + 26223837 26223877 41 GAATACCTCAGAAGTAAACTCTGTTCACTGTATGAAAATGA GAATACCTCAGAAGTAAACTCTGTTCACTGTATAAAAATGA < 41bp 1 0.0823041615584025 1 0.172660022974014 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223857 chr8:26223870 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_28084 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 53bp
chr8 26223870 26223870 1 + G A LUAD 26223862 + 26223842 26223882 41 CCTCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTGCA CCTCAGAAGTAAACTCTGTTCACTGTATAAAAATGACTGCA < 41bp 1 0.303793471490189 1 0.314831107854843 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223862 chr8:26223870 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_28085 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 40bp
chr8 26223870 26223870 1 + G A LUAD 26223862 + 26223842 26223882 41 CCTCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTGCA CCTCAGAAGTAAACTCTGTTCACTGTATAAAAATGACTGCA < 41bp 1 0.303793471490189 1 0.314831107854843 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223862 chr8:26223870 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_28085 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 53bp
chr8 26223870 26223870 1 + G A LUAD 26223864 + 26223844 26223884 41 TCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTGCATA TCAGAAGTAAACTCTGTTCACTGTATAAAAATGACTGCATA < 41bp 1 0.513517263600509 1 0.273767560720444 experiment 0.972965472798983 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223864 chr8:26223870 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_28086 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 40bp
chr8 26223870 26223870 1 + G A LUAD 26223864 + 26223844 26223884 41 TCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTGCATA TCAGAAGTAAACTCTGTTCACTGTATAAAAATGACTGCATA < 41bp 1 0.513517263600509 1 0.273767560720444 experiment 0.972965472798983 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223864 chr8:26223870 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_28086 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 53bp
chr8 26223870 26223870 1 + G A LUAD 26223878 + 26223858 26223898 41 TGTTCACTGTATGAAAATGACTGCATATTTGACAAATTTGA TGTTCACTGTATAAAAATGACTGCATATTTGACAAATTTGA < 41bp 1 0.427514693417673 1 0.0974319577217102 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223878 chr8:26223870 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_28087 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 40bp
chr8 26223870 26223870 1 + G A LUAD 26223878 + 26223858 26223898 41 TGTTCACTGTATGAAAATGACTGCATATTTGACAAATTTGA TGTTCACTGTATAAAAATGACTGCATATTTGACAAATTTGA < 41bp 1 0.427514693417673 1 0.0974319577217102 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223878 chr8:26223870 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_28087 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 53bp
chr8 26223870 26223870 1 + G A LUAD 26223881 + 26223861 26223901 41 TCACTGTATGAAAATGACTGCATATTTGACAAATTTGAATG TCACTGTATAAAAATGACTGCATATTTGACAAATTTGAATG < 41bp 1 0.0634634630898166 1 0.0999782681465149 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223881 chr8:26223870 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_28088 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 40bp
chr8 26223870 26223870 1 + G A LUAD 26223881 + 26223861 26223901 41 TCACTGTATGAAAATGACTGCATATTTGACAAATTTGAATG TCACTGTATAAAAATGACTGCATATTTGACAAATTTGAATG < 41bp 1 0.0634634630898166 1 0.0999782681465149 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223881 chr8:26223870 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_28088 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 53bp
chr8 26223870 26223870 1 + G A LUAD 26223890 + 26223870 26223910 41 GAAAATGACTGCATATTTGACAAATTTGAATGTTGTTGGAA AAAAATGACTGCATATTTGACAAATTTGAATGTTGTTGGAA < 41bp 1 0.203285962758063 1 0.277453482151031 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223890 chr8:26223870 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_28089 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 40bp
chr8 26223870 26223870 1 + G A LUAD 26223890 + 26223870 26223910 41 GAAAATGACTGCATATTTGACAAATTTGAATGTTGTTGGAA AAAAATGACTGCATATTTGACAAATTTGAATGTTGTTGGAA < 41bp 1 0.203285962758063 1 0.277453482151031 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223890 chr8:26223870 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_28089 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 53bp
chr1 43917151 43917151 1 - G A LUAD 43917159 - 43917139 43917179 41 AGCCCAGCAGCCCCGGAGAGCTGAATTTCCCCTATCTGTTT AGCCCAGCAGCCCCGGAGAGCTGAATTTTCCCTATCTGTTT < 41bp 1 0.669821772007015 1 0.131584167480469 experiment 0.66035645598597 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HYI ENSG00000178922 CDS Human protein_coding chr1:43917159 chr1:43917151 synonymous SNV . 0 29 hm5C_associated_SNPs_28090 0 0 1 0 3 HYI chr1:43917081 5'GT 43917081 Upstream 71bp
chr1 43917151 43917151 1 - G A LUAD 43917159 - 43917139 43917179 41 AGCCCAGCAGCCCCGGAGAGCTGAATTTCCCCTATCTGTTT AGCCCAGCAGCCCCGGAGAGCTGAATTTTCCCTATCTGTTT < 41bp 1 0.669821772007015 1 0.131584167480469 experiment 0.66035645598597 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HYI ENSG00000178922 CDS Human protein_coding chr1:43917159 chr1:43917151 synonymous SNV . 0 29 hm5C_associated_SNPs_28090 0 0 1 0 3 HYI chr1:43917099 5'GT 43917099 Upstream 53bp
chr1 43917151 43917151 1 - G A LUAD 43917159 - 43917139 43917179 41 AGCCCAGCAGCCCCGGAGAGCTGAATTTCCCCTATCTGTTT AGCCCAGCAGCCCCGGAGAGCTGAATTTTCCCTATCTGTTT < 41bp 1 0.669821772007015 1 0.131584167480469 experiment 0.66035645598597 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HYI ENSG00000178922 CDS Human protein_coding chr1:43917159 chr1:43917151 synonymous SNV . 0 29 hm5C_associated_SNPs_28090 0 0 1 0 3 HYI chr1:43917215 3'AG 43917215 Downstream 65bp
chr19 803570 803570 1 + G A LUAD 803568 + 803548 803588 41 CCTTCTCTTGCAGCGGGGATCTGACGAGCTTTTCTCTACTT CCTTCTCTTGCAGCGGGGATCTAACGAGCTTTTCTCTACTT < 41bp 1 0.273738991971413 1 0.198864221572876 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:803568 chr19:803570 nonsynonymous SNV 0.980 4 23 hm5C_associated_SNPs_28091 0 0 1 0 2 PTBP1 chr19:803561 3'AG 803561 Downstream 10bp
chr19 803570 803570 1 + G A LUAD 803568 + 803548 803588 41 CCTTCTCTTGCAGCGGGGATCTGACGAGCTTTTCTCTACTT CCTTCTCTTGCAGCGGGGATCTAACGAGCTTTTCTCTACTT < 41bp 1 0.273738991971413 1 0.198864221572876 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:803568 chr19:803570 nonsynonymous SNV 0.980 4 23 hm5C_associated_SNPs_28091 0 0 1 0 2 PTBP1 chr19:803636 5'GT 803636 Upstream 67bp
chr15 25213175 25213175 1 + A T LUAD 25213171 + 25213151 25213191 41 GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA GGCATTCTTAGCTGAGACACCAAGTGGTGGTTAAAGCCATA < 41bp 1 0.516368809529919 1 0.520489573478699 experiment 0.967262380940161 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNURF ENSG00000214265;ENSG00000273173 CDS Human other chr15:25213171 chr15:25213175 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_28092 0 0 0 2 2 SNURF chr15:25213079 3'AG 25213079 Downstream 97bp
chr15 25213175 25213175 1 + A T LUAD 25213171 + 25213151 25213191 41 GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA GGCATTCTTAGCTGAGACACCAAGTGGTGGTTAAAGCCATA < 41bp 1 0.516368809529919 1 0.520489573478699 experiment 0.967262380940161 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNURF ENSG00000214265;ENSG00000273173 CDS Human other chr15:25213171 chr15:25213175 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_28092 0 0 0 2 2 SNHG14 chr15:25213229 5'GT 25213229 Upstream 55bp
chr1 41215346 41215346 1 + C T LUAD 41215344 + 41215324 41215364 41 TTCACACAGAAGATAACAAGCGCCGGACTCTACAGGTATTA TTCACACAGAAGATAACAAGCGTCGGACTCTACAGGTATTA < 41bp 1 0.348983843195347 1 0.34994250535965 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NFYC ENSG00000066136 CDS Human protein_coding chr1:41215344 chr1:41215346 synonymous SNV . 0 23 hm5C_associated_SNPs_28093 0 0 1 0 1 NFYC chr1:41215358 5'GT 41215358 Upstream 13bp
chr16 53504351 53504351 1 + G T LUAD 53504331 + 53504311 53504351 41 TGGAGGGATAACATTCTTCCCTGTCCAAGTCAATGTTGGGG TGGAGGGATAACATTCTTCCCTGTCCAAGTCAATGTTGGGT < 41bp 1 0.0967030597953636 1 0.161844432353973 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RBL2 ENSG00000103479 CDS Human protein_coding chr16:53504331 chr16:53504351 nonsynonymous SNV 0.981 4 41 hm5C_associated_SNPs_28097 0 0 1 0 1 RBL2 chr16:53504295 3'AG 53504295 Downstream 57bp
chr7 44802527 44802527 1 + G T LUAD 44802539 + 44802519 44802559 41 GTCCGCTCGGTGCTGCAGGGCCTCCTCAAAAAGCGCCTCCT GTCCGCTCTGTGCTGCAGGGCCTCCTCAAAAAGCGCCTCCT < 41bp 1 0.0251221003891486 1 0.0317598581314087 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44802539 chr7:44802527 synonymous SNV . 0 9 hm5C_associated_SNPs_28099 0 0 1 0 1 ZMIZ2 chr7:44802480 3'AG 44802480 Downstream 48bp
chr10 72294242 72294242 1 + C A LUAD 72294256 + 72294236 72294276 41 AGCTTTCTCCGCATGGTGCCCCAGGGAAGGAGGATGGTGGA AGCTTTATCCGCATGGTGCCCCAGGGAAGGAGGATGGTGGA < 41bp 1 0.350998468283631 1 0.826477110385895 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72294256 chr10:72294242 nonsynonymous SNV 0.861 0 7 hm5C_associated_SNPs_28100 0 0 0 0 2 PALD1 chr10:72294181 3'AG 72294181 Downstream 62bp
chr10 72294242 72294242 1 + C A LUAD 72294256 + 72294236 72294276 41 AGCTTTCTCCGCATGGTGCCCCAGGGAAGGAGGATGGTGGA AGCTTTATCCGCATGGTGCCCCAGGGAAGGAGGATGGTGGA < 41bp 1 0.350998468283631 1 0.826477110385895 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72294256 chr10:72294242 nonsynonymous SNV 0.861 0 7 hm5C_associated_SNPs_28100 0 0 0 0 2 PALD1 chr10:72294280 5'GT 72294280 Upstream 39bp
chr10 89474571 89474571 1 + C T LUAD 89474562 + 89474542 89474582 41 TCCTGAGCGTGTGCTTAAAACCAATTTGTCCACAGTGAGTG TCCTGAGCGTGTGCTTAAAACCAATTTGTTCACAGTGAGTG < 41bp 1 0.216065792301936 1 0.0824171900749207 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89474562 chr10:89474571 nonsynonymous SNV 0.995 1 30 hm5C_associated_SNPs_28101 0 0 1 0 2 PAPSS2 chr10:89474502 3'AG 89474502 Downstream 70bp
chr10 89474571 89474571 1 + C T LUAD 89474562 + 89474542 89474582 41 TCCTGAGCGTGTGCTTAAAACCAATTTGTCCACAGTGAGTG TCCTGAGCGTGTGCTTAAAACCAATTTGTTCACAGTGAGTG < 41bp 1 0.216065792301936 1 0.0824171900749207 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89474562 chr10:89474571 nonsynonymous SNV 0.995 1 30 hm5C_associated_SNPs_28101 0 0 1 0 2 PAPSS2 chr10:89474620 5'GT 89474620 Upstream 50bp
chr20 49458367 49458367 1 + G T LUAD 49458380 + 49458360 49458400 41 GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGCGGAG GCTGAGCTGGACCATGGGGCCTTCCCTCAGGCCCTGCGGAG < 41bp 1 0.282742235245222 1 0.039393424987793 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49458380 chr20:49458367 nonsynonymous SNV 0.051 1 8 hm5C_associated_SNPs_28102 0 0 0 0 2 BCAS4 chr20:49458303 3'AG 49458303 Downstream 65bp
chr20 49458367 49458367 1 + G T LUAD 49458380 + 49458360 49458400 41 GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGCGGAG GCTGAGCTGGACCATGGGGCCTTCCCTCAGGCCCTGCGGAG < 41bp 1 0.282742235245222 1 0.039393424987793 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49458380 chr20:49458367 nonsynonymous SNV 0.051 1 8 hm5C_associated_SNPs_28102 0 0 0 0 2 BCAS4 chr20:49458437 5'GT 49458437 Upstream 71bp
chr17 76399740 76399740 1 + G T LUAD 76399746 + 76399726 76399766 41 ATGCTGCATGCCCAGACCTTCCACAGCAACTCTCTTTTGAC ATGCTGCATGCCCATACCTTCCACAGCAACTCTCTTTTGAC < 41bp 1 0.347680839174833 1 0.0599022209644318 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PGS1 ENSG00000087157 CDS Human protein_coding chr17:76399746 chr17:76399740 nonsynonymous SNV 0.990 1 15 hm5C_associated_SNPs_28118 0 0 1 0 1 PGS1 chr17:76399649 3'AG 76399649 Downstream 92bp
chrX 40457953 40457953 1 + T C LUAD 40457957 + 40457937 40457977 41 ACCTGCTCTTTCTTTCTGAACTGCAAGTGCTACATGATATT ACCTGCTCTTTCTTTCCGAACTGCAAGTGCTACATGATATT < 41bp 1 0.633650022219844 1 0.045349508523941 experiment 0.732699955560312 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40457957 chrX:40457953 synonymous SNV . 0 17 hm5C_associated_SNPs_28121 0 0 1 0 2 ATP6AP2 chrX:40457933 3'AG 40457933 Downstream 21bp
chrX 40457953 40457953 1 + T C LUAD 40457957 + 40457937 40457977 41 ACCTGCTCTTTCTTTCTGAACTGCAAGTGCTACATGATATT ACCTGCTCTTTCTTTCCGAACTGCAAGTGCTACATGATATT < 41bp 1 0.633650022219844 1 0.045349508523941 experiment 0.732699955560312 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40457957 chrX:40457953 synonymous SNV . 0 17 hm5C_associated_SNPs_28121 0 0 1 0 2 ATP6AP2 chrX:40457986 5'GT 40457986 Upstream 34bp
chr7 141255319 141255319 1 + G T LUAD 141255330 + 141255310 141255350 41 CTACAGCTGGGCTCTGCCTGCTGACCTGGGGAGGCCATTGG CTACAGCTGTGCTCTGCCTGCTGACCTGGGGAGGCCATTGG < 41bp 1 0.4471746514373 1 0.218439489603043 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGK ENSG00000006530 CDS Human protein_coding chr7:141255330 chr7:141255319 nonsynonymous SNV 0.999 2 10 hm5C_associated_SNPs_28122 0 0 1 2 2 AGK chr7:141255253 3'AG 141255253 Downstream 67bp
chr7 141255319 141255319 1 + G T LUAD 141255330 + 141255310 141255350 41 CTACAGCTGGGCTCTGCCTGCTGACCTGGGGAGGCCATTGG CTACAGCTGTGCTCTGCCTGCTGACCTGGGGAGGCCATTGG < 41bp 1 0.4471746514373 1 0.218439489603043 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGK ENSG00000006530 CDS Human protein_coding chr7:141255330 chr7:141255319 nonsynonymous SNV 0.999 2 10 hm5C_associated_SNPs_28122 0 0 1 2 2 AGK chr7:141255367 5'GT 141255367 Upstream 49bp
chr10 118314923 118314923 1 + G T LUAD 118314913 + 118314893 118314933 41 ATTTCAGGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGA ATTTCAGGGTTTGGAATGAGCCAAGTCGTGTGCCACCTAGA < 41bp 1 0.303353417285109 1 0.11522963643074 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314913 chr10:118314923 nonsynonymous SNV 0.303 5 31 hm5C_associated_SNPs_28126 0 0 0 0 1 PNLIP chr10:118315019 5'GT 118315019 Upstream 97bp
chr10 118314923 118314923 1 + G T LUAD 118314914 + 118314894 118314934 41 TTTCAGGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGAT TTTCAGGGTTTGGAATGAGCCAAGTCGTGTGCCACCTAGAT < 41bp 1 0.517000380367893 1 0.324227720499039 experiment 0.965999239264213 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314914 chr10:118314923 nonsynonymous SNV 0.303 5 30 hm5C_associated_SNPs_28127 0 0 0 0 1 PNLIP chr10:118315019 5'GT 118315019 Upstream 97bp
chr10 118314923 118314923 1 + G T LUAD 118314919 + 118314899 118314939 41 GGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTT GGGTTTGGAATGAGCCAAGTCGTGTGCCACCTAGATTTCTT < 41bp 1 0.421587021042804 1 0.0740934014320374 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314919 chr10:118314923 nonsynonymous SNV 0.303 5 25 hm5C_associated_SNPs_28128 0 0 0 0 1 PNLIP chr10:118315019 5'GT 118315019 Upstream 97bp
chr10 118314923 118314923 1 + G T LUAD 118314925 + 118314905 118314945 41 GGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTTTCCAAA GGAATGAGCCAAGTCGTGTGCCACCTAGATTTCTTTCCAAA < 41bp 1 0.125751718690511 1 0.0601807236671448 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314925 chr10:118314923 nonsynonymous SNV 0.303 5 19 hm5C_associated_SNPs_28129 0 0 0 0 1 PNLIP chr10:118315019 5'GT 118315019 Upstream 97bp
chr2 24974871 24974871 1 + G C LUAD 24974873 + 24974853 24974893 41 ATGGTTCCCCAAGGTGAGGCCAACTTTGCTCCATCTCTAAG ATGGTTCCCCAAGGTGAGCCCAACTTTGCTCCATCTCTAAG < 41bp 1 0.244848112445766 1 0.0657117664813995 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24974873 chr2:24974871 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_28130 0 0 0 0 1 NCOA1 chr2:24974851 3'AG 24974851 Downstream 21bp
chr11 12281424 12281424 1 + C T LUAD 12281442 + 12281422 12281462 41 CACCCTGGAAGGCAGCCCCCCAGGTATCTCCACCTCCTTCT CATCCTGGAAGGCAGCCCCCCAGGTATCTCCACCTCCTTCT < 41bp 1 0.664579960750379 1 0.238115787506104 experiment 0.670840078499242 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12281442 chr11:12281424 nonsynonymous SNV 0.073 0 3 hm5C_associated_SNPs_28131 0 0 1 0 2 MICAL2 chr11:12281342 3'AG 12281342 Downstream 83bp
chr11 12281424 12281424 1 + C T LUAD 12281442 + 12281422 12281462 41 CACCCTGGAAGGCAGCCCCCCAGGTATCTCCACCTCCTTCT CATCCTGGAAGGCAGCCCCCCAGGTATCTCCACCTCCTTCT < 41bp 1 0.664579960750379 1 0.238115787506104 experiment 0.670840078499242 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12281442 chr11:12281424 nonsynonymous SNV 0.073 0 3 hm5C_associated_SNPs_28131 0 0 1 0 2 MICAL2 chr11:12281444 5'GT 12281444 Upstream 21bp
chr3 183899749 183899749 1 + G T LUAD 183899729 + 183899709 183899749 41 AACCAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAG AACCAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAT < 41bp 1 0.0273679185188173 1 0.0301083922386169 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899729 chr3:183899749 nonsynonymous SNV 0.998 2 41 hm5C_associated_SNPs_28135 0 0 1 0 2 AP2M1 chr3:183899700 3'AG 183899700 Downstream 50bp
chr3 183899749 183899749 1 + G T LUAD 183899729 + 183899709 183899749 41 AACCAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAG AACCAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAT < 41bp 1 0.0273679185188173 1 0.0301083922386169 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899729 chr3:183899749 nonsynonymous SNV 0.998 2 41 hm5C_associated_SNPs_28135 0 0 1 0 2 AP2M1 chr3:183899835 5'GT 183899835 Upstream 87bp
chr3 183899749 183899749 1 + G T LUAD 183899730 + 183899710 183899750 41 ACCAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAGT ACCAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTATT < 41bp 1 0.292008363864929 1 0.0218141973018646 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899730 chr3:183899749 nonsynonymous SNV 0.998 2 40 hm5C_associated_SNPs_28136 0 0 1 0 2 AP2M1 chr3:183899700 3'AG 183899700 Downstream 50bp
chr3 183899749 183899749 1 + G T LUAD 183899730 + 183899710 183899750 41 ACCAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAGT ACCAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTATT < 41bp 1 0.292008363864929 1 0.0218141973018646 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899730 chr3:183899749 nonsynonymous SNV 0.998 2 40 hm5C_associated_SNPs_28136 0 0 1 0 2 AP2M1 chr3:183899835 5'GT 183899835 Upstream 87bp
chr3 183899749 183899749 1 + G T LUAD 183899733 + 183899713 183899753 41 AAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAGTGCG AAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTATTGCG < 41bp 1 0.60327947903638 1 0.738890528678894 experiment 0.793441041927241 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899733 chr3:183899749 nonsynonymous SNV 0.998 2 37 hm5C_associated_SNPs_28137 0 0 1 0 2 AP2M1 chr3:183899700 3'AG 183899700 Downstream 50bp
chr3 183899749 183899749 1 + G T LUAD 183899733 + 183899713 183899753 41 AAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAGTGCG AAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTATTGCG < 41bp 1 0.60327947903638 1 0.738890528678894 experiment 0.793441041927241 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899733 chr3:183899749 nonsynonymous SNV 0.998 2 37 hm5C_associated_SNPs_28137 0 0 1 0 2 AP2M1 chr3:183899835 5'GT 183899835 Upstream 87bp
chr11 12281439 12281439 1 + C T LUAD 12281442 + 12281422 12281462 41 CACCCTGGAAGGCAGCCCCCCAGGTATCTCCACCTCCTTCT CACCCTGGAAGGCAGCCTCCCAGGTATCTCCACCTCCTTCT < 41bp 1 0.72330257708591 1 0.0885542929172516 experiment 0.553394845828181 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12281442 chr11:12281439 nonsynonymous SNV 0.995 2 18 hm5C_associated_SNPs_28138 0 0 1 1 2 MICAL2 chr11:12281342 3'AG 12281342 Downstream 98bp
chr11 12281439 12281439 1 + C T LUAD 12281442 + 12281422 12281462 41 CACCCTGGAAGGCAGCCCCCCAGGTATCTCCACCTCCTTCT CACCCTGGAAGGCAGCCTCCCAGGTATCTCCACCTCCTTCT < 41bp 1 0.72330257708591 1 0.0885542929172516 experiment 0.553394845828181 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12281442 chr11:12281439 nonsynonymous SNV 0.995 2 18 hm5C_associated_SNPs_28138 0 0 1 1 2 MICAL2 chr11:12281444 5'GT 12281444 Upstream 6bp
chr1 237052596 237052596 1 + G C LUAD 237052594 + 237052574 237052614 41 GGCAGCTCCGGGGCAAGTACCCGAATCGAGGCTTTCCCAAG GGCAGCTCCGGGGCAAGTACCCCAATCGAGGCTTTCCCAAG < 41bp 1 0.498407139589224 1 0.804300606250763 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTR ENSG00000116984 CDS Human protein_coding chr1:237052594 chr1:237052596 synonymous SNV . 0 23 hm5C_associated_SNPs_28139 0 0 1 0 1 MTR chr1:237052636 5'GT 237052636 Upstream 41bp
chr6 32134872 32134872 1 + G T LUAD 32134883 + 32134863 32134903 41 GACGTGGATGAATGTAGGACCAGCATCACCCTCTGCTCGCA GACGTGGATTAATGTAGGACCAGCATCACCCTCTGCTCGCA < 41bp 1 0.468615056884302 1 0.464891076087952 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134883 chr6:32134872 stopgain 1.000 0 10 hm5C_associated_SNPs_28145 0 0 1 0 1 EGFL8 chr6:32134864 3'AG 32134864 Downstream 9bp
chr5 176522652 176522652 1 + G T LUAD 176522651 + 176522631 176522671 41 TCCTCGGAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGG TCCTCGGAGCAGTGAGGGGCCTCTCTCCTTCCCAGTCCTGG < 41bp 1 0.140220052649786 1 0.0631823241710663 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522651 chr5:176522652 synonymous SNV . 0 22 hm5C_associated_SNPs_28147 0 0 1 0 1 FGFR4 chr5:176522724 5'GT 176522724 Upstream 73bp
chr5 176522652 176522652 1 + G T LUAD 176522657 + 176522637 176522677 41 GAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGGTCTCCT GAGCAGTGAGGGGCCTCTCTCCTTCCCAGTCCTGGTCTCCT < 41bp 1 0.0457471915724374 1 0.237144321203232 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522657 chr5:176522652 synonymous SNV . 0 16 hm5C_associated_SNPs_28148 0 0 1 0 1 FGFR4 chr5:176522724 5'GT 176522724 Upstream 73bp
chr7 43590133 43590133 1 + G A LUAD 43590119 + 43590099 43590139 41 ACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGCGGGTG ACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGACGGGTG < 41bp 1 0.256117854275527 1 0.290476500988007 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43590119 chr7:43590133 stopgain 1.000 1 35 hm5C_associated_SNPs_28149 0 0 0 0 2 HECW1 chr7:43590044 3'AG 43590044 Downstream 90bp
chr7 43590133 43590133 1 + G A LUAD 43590119 + 43590099 43590139 41 ACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGCGGGTG ACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGACGGGTG < 41bp 1 0.256117854275527 1 0.290476500988007 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43590119 chr7:43590133 stopgain 1.000 1 35 hm5C_associated_SNPs_28149 0 0 0 0 2 HECW1 chr7:43590190 5'GT 43590190 Upstream 58bp
chr9 135942502 135942502 1 + G T LUAD 135942495 + 135942475 135942515 41 GTGGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAG GTGGCTGAGAAGGTGGGTTGCCCTGTGTGTGATGCCGCCAG < 41bp 1 0.260447510888096 1 0.0371949076652527 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942495 chr9:135942502 nonsynonymous SNV 0.168 0 28 hm5C_associated_SNPs_28150 0 0 1 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 28bp
chr9 135942502 135942502 1 + G T LUAD 135942496 + 135942476 135942516 41 TGGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGG TGGCTGAGAAGGTGGGTTGCCCTGTGTGTGATGCCGCCAGG < 41bp 1 0.255886736392176 1 0.168404340744019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942496 chr9:135942502 nonsynonymous SNV 0.168 0 27 hm5C_associated_SNPs_28151 0 0 1 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 28bp
chr9 135942502 135942502 1 + G T LUAD 135942497 + 135942477 135942517 41 GGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGGA GGCTGAGAAGGTGGGTTGCCCTGTGTGTGATGCCGCCAGGA < 41bp 1 0.528523046351836 1 0.459952920675278 experiment 0.942953907296328 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942497 chr9:135942502 nonsynonymous SNV 0.168 0 26 hm5C_associated_SNPs_28152 0 0 1 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 28bp
chr9 135942502 135942502 1 + G T LUAD 135942509 + 135942489 135942529 41 GGGTTGCCCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTC GGGTTGCCCTGTGTGTGATGCCGCCAGGATGGCCCAGTGTC < 41bp 1 0.166006467684997 1 0.0943680107593536 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942509 chr9:135942502 nonsynonymous SNV 0.168 0 14 hm5C_associated_SNPs_28153 0 0 1 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 28bp
chr9 135942502 135942502 1 + G T LUAD 135942510 + 135942490 135942530 41 GGTTGCCCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTCT GGTTGCCCTGTGTGTGATGCCGCCAGGATGGCCCAGTGTCT < 41bp 1 0.790088404721338 1 0.564921677112579 experiment 0.419823190557324 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942510 chr9:135942502 nonsynonymous SNV 0.168 0 13 hm5C_associated_SNPs_28154 0 0 1 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 28bp
chr9 135942502 135942502 1 + G T LUAD 135942512 + 135942492 135942532 41 TTGCCCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTCTGA TTGCCCTGTGTGTGATGCCGCCAGGATGGCCCAGTGTCTGA < 41bp 1 0.441072252701721 1 0.319344103336334 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942512 chr9:135942502 nonsynonymous SNV 0.168 0 11 hm5C_associated_SNPs_28155 0 0 1 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 28bp
chr9 135942502 135942502 1 + G T LUAD 135942521 + 135942501 135942541 41 GGGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTG GTGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTG < 41bp 1 0.293204395914384 1 0.0599570274353027 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942521 chr9:135942502 nonsynonymous SNV 0.168 0 2 hm5C_associated_SNPs_28156 0 0 1 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 28bp
chr9 135942502 135942502 1 + G T LUAD 135942522 + 135942502 135942542 41 GGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTGA TGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTGA < 41bp 1 0.369445504304009 1 0.207078605890274 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942522 chr9:135942502 nonsynonymous SNV 0.168 0 1 hm5C_associated_SNPs_28157 0 0 1 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 28bp
chr7 142459849 142459849 1 + C A LUAD 142459834 + 142459814 142459854 41 CGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCTCTGGCT CGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCTATGGCT < 41bp 1 0.60365918217393 1 0.211143165826797 experiment 0.79268163565214 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459834 chr7:142459849 nonsynonymous SNV 0.146 5 36 hm5C_associated_SNPs_28158 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 30bp
chr7 142459849 142459849 1 + C A LUAD 142459841 + 142459821 142459861 41 CCAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAA CCAGCCACTGGCACGAAGTGCCTCATCTATGGCTGGGGCAA < 41bp 1 0.382716106401357 1 0.0521213412284851 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459841 chr7:142459849 nonsynonymous SNV 0.146 5 29 hm5C_associated_SNPs_28159 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 30bp
chr7 142459849 142459849 1 + C A LUAD 142459842 + 142459822 142459862 41 CAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAC CAGCCACTGGCACGAAGTGCCTCATCTATGGCTGGGGCAAC < 41bp 1 0.467678256081224 1 0.058428019285202 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459842 chr7:142459849 nonsynonymous SNV 0.146 5 28 hm5C_associated_SNPs_28160 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 30bp
chr7 142459849 142459849 1 + C A LUAD 142459844 + 142459824 142459864 41 GCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACAC GCCACTGGCACGAAGTGCCTCATCTATGGCTGGGGCAACAC < 41bp 1 0.553792551643329 1 0.0233117043972015 experiment 0.892414896713343 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459844 chr7:142459849 nonsynonymous SNV 0.146 5 26 hm5C_associated_SNPs_28161 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 30bp
chr7 142459849 142459849 1 + C A LUAD 142459847 + 142459827 142459867 41 ACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACACTGC ACTGGCACGAAGTGCCTCATCTATGGCTGGGGCAACACTGC < 41bp 1 0.7179781478223 1 0.407539904117584 experiment 0.564043704355401 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459847 chr7:142459849 nonsynonymous SNV 0.146 5 23 hm5C_associated_SNPs_28162 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 30bp
chr7 142459849 142459849 1 + C A LUAD 142459862 + 142459842 142459882 41 CTCATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGA CTCATCTATGGCTGGGGCAACACTGCGAGCTCTGGCGGTGA < 41bp 1 0.374399790394299 1 0.176778614521027 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459862 chr7:142459849 nonsynonymous SNV 0.146 5 8 hm5C_associated_SNPs_28163 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 30bp
chr7 142459849 142459849 1 + C A LUAD 142459864 + 142459844 142459884 41 CATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGT CATCTATGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGT < 41bp 1 0.750692155910458 1 0.379119336605072 experiment 0.498615688179083 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459864 chr7:142459849 nonsynonymous SNV 0.146 5 6 hm5C_associated_SNPs_28164 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 30bp
chr7 142459849 142459849 1 + C A LUAD 142459867 + 142459847 142459887 41 CTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGG CTATGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGG < 41bp 1 0.396077379281226 1 0.473762691020966 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459867 chr7:142459849 nonsynonymous SNV 0.146 5 3 hm5C_associated_SNPs_28165 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 30bp
chr7 150768924 150768924 1 + G A LUAD 150768915 + 150768895 150768935 41 CTGCTGGTCTTTGAGGAGGCCTTCTTCTCGGTGAGGGCTCT CTGCTGGTCTTTGAGGAGGCCTTCTTCTCAGTGAGGGCTCT < 41bp 1 0.0777828567978536 1 0.0802178382873535 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150768915 chr7:150768924 synonymous SNV . 0 30 hm5C_associated_SNPs_28166 0 0 1 0 1 SLC4A2 chr7:150768924 5'GT 150768924 Upstream 1bp
chr7 69064861 69064861 1 + G A LUAD 69064849 + 69064829 69064869 41 TCCTCCGCCCCGTCCCGGCCCAGACCCCCGCGGAGGAAGCG TCCTCCGCCCCGTCCCGGCCCAGACCCCCGCGAAGGAAGCG < 41bp 1 0.157918629741951 1 0.0421666204929352 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69064849 chr7:69064861 synonymous SNV . 0 33 hm5C_associated_SNPs_28169 0 0 0 0 1 AUTS2 chr7:69064948 5'GT 69064948 Upstream 88bp
chr7 98564703 98564703 1 + A C LUAD 98564687 + 98564667 98564707 41 CCTACACTCCGGGAGAAGTCCATTTTGCTTGTGAAGATGAT CCTACACTCCGGGAGAAGTCCATTTTGCTTGTGAAGCTGAT < 41bp 1 0.0127895269665802 1 0.101994097232819 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98564687 chr7:98564703 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_28172 0 0 1 0 2 TRRAP chr7:98564664 3'AG 98564664 Downstream 40bp
chr7 98564703 98564703 1 + A C LUAD 98564687 + 98564667 98564707 41 CCTACACTCCGGGAGAAGTCCATTTTGCTTGTGAAGATGAT CCTACACTCCGGGAGAAGTCCATTTTGCTTGTGAAGCTGAT < 41bp 1 0.0127895269665802 1 0.101994097232819 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98564687 chr7:98564703 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_28172 0 0 1 0 2 TRRAP chr7:98564785 5'GT 98564785 Upstream 83bp
chr5 122161790 122161790 1 + G T LUAD 122161793 + 122161773 122161813 41 GGCAGAAATGGGAAGATGCTCAAATTACTTTGCTCAAAAAA GGCAGAAATGGGAAGATTCTCAAATTACTTTGCTCAAAAAA < 41bp 1 0.507478930205525 1 0.508465051651001 experiment 0.985042139588951 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX2 ENSG00000205302 CDS Human protein_coding chr5:122161793 chr5:122161790 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_28175 0 0 1 0 1 SNX2 chr5:122161888 5'GT 122161888 Upstream 99bp
chr5 122161791 122161791 1 + C G LUAD 122161793 + 122161773 122161813 41 GGCAGAAATGGGAAGATGCTCAAATTACTTTGCTCAAAAAA GGCAGAAATGGGAAGATGGTCAAATTACTTTGCTCAAAAAA < 41bp 1 0.358482681819969 1 0.273212403059006 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX2 ENSG00000205302 CDS Human protein_coding chr5:122161793 chr5:122161791 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_28176 0 0 1 0 1 SNX2 chr5:122161888 5'GT 122161888 Upstream 98bp
chr12 31236920 31236920 1 + G A LUAD 31236904 + 31236884 31236924 41 GTCTTCTTCCTGCGAAGGGGCTGCAGGCACCCCGAGGCCTG GTCTTCTTCCTGCGAAGGGGCTGCAGGCACCCCGAGACCTG < 41bp 1 0.686559643590155 1 0.480934500694275 experiment 0.626880712819691 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31236904 chr12:31236920 nonsynonymous SNV . 0 37 hm5C_associated_SNPs_28177 0 0 1 0 1 DDX11 chr12:31236995 5'GT 31236995 Upstream 76bp
chr2 85133174 85133174 1 + C G LUAD 85133155 + 85133135 85133175 41 TAAGAAAATGGCAGACAAACCAGACATGGGGGAAATCGCCA TAAGAAAATGGCAGACAAACCAGACATGGGGGAAATCGCGA < 41bp 1 0.470467278251322 1 0.253531277179718 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMSB10 ENSG00000034510 CDS Human protein_coding chr2:85133155 chr2:85133174 synonymous SNV . 0 40 hm5C_associated_SNPs_28178 0 0 1 0 1 TMSB10 chr2:85133127 3'AG 85133127 Downstream 48bp
chr5 64881965 64881965 1 + C T LUAD 64881981 + 64881961 64882001 41 GGATCAAATACTAATGGATCCCAGTTTTTCATAACGGTAGT GGATTAAATACTAATGGATCCCAGTTTTTCATAACGGTAGT < 41bp 1 0.276618221402497 1 0.23266538977623 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPWD1 ENSG00000113593 CDS Human protein_coding chr5:64881981 chr5:64881965 nonsynonymous SNV 0.989 2 5 hm5C_associated_SNPs_28179 0 0 0 0 1 PPWD1 chr5:64882008 5'GT 64882008 Upstream 44bp
chr6 30545863 30545863 1 + A G LUAD 30545872 + 30545852 30545892 41 GCAAAAAAAAAAGCGAGATACCCGAAAAGGCAGGCGGAAGA GCAAAAAAAAAGGCGAGATACCCGAAAAGGCAGGCGGAAGA < 41bp 1 0.511406488112374 1 0.370166510343552 experiment 0.977187023775252 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30545872 chr6:30545863 nonsynonymous SNV 0.999 1 12 hm5C_associated_SNPs_28180 0 0 1 0 2 ABCF1 chr6:30545850 3'AG 30545850 Downstream 14bp
chr6 30545863 30545863 1 + A G LUAD 30545872 + 30545852 30545892 41 GCAAAAAAAAAAGCGAGATACCCGAAAAGGCAGGCGGAAGA GCAAAAAAAAAGGCGAGATACCCGAAAAGGCAGGCGGAAGA < 41bp 1 0.511406488112374 1 0.370166510343552 experiment 0.977187023775252 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30545872 chr6:30545863 nonsynonymous SNV 0.999 1 12 hm5C_associated_SNPs_28180 0 0 1 0 2 ABCF1 chr6:30545853 3'AG 30545853 Downstream 11bp
chr7 142460405 142460405 1 + A T LUAD 142460388 + 142460368 142460408 41 AGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA AGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCATGGA < 41bp 1 0.124368806353398 1 0.122731268405914 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460388 chr7:142460405 nonsynonymous SNV 0.985 5 38 hm5C_associated_SNPs_28184 0 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 14bp
chr7 142460405 142460405 1 + A T LUAD 142460391 + 142460371 142460411 41 AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCATGGATTC < 41bp 1 0.0403366150894417 1 0.104938924312592 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460391 chr7:142460405 nonsynonymous SNV 0.985 5 35 hm5C_associated_SNPs_28185 0 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 14bp
chr7 142460405 142460405 1 + A T LUAD 142460392 + 142460372 142460412 41 ACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA ACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCATGGATTCA < 41bp 1 0.62303869147421 1 0.427725791931152 experiment 0.753922617051579 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460392 chr7:142460405 nonsynonymous SNV 0.985 5 34 hm5C_associated_SNPs_28186 0 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 14bp
chr7 142460405 142460405 1 + A T LUAD 142460403 + 142460383 142460423 41 GTGGGCTTCCTTGAGGGAGGCAAGGATTCATGTCAGGTGAT GTGGGCTTCCTTGAGGGAGGCATGGATTCATGTCAGGTGAT < 41bp 1 0.306816954134783 1 0.254401296377182 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460403 chr7:142460405 nonsynonymous SNV 0.985 5 23 hm5C_associated_SNPs_28187 0 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 14bp
chr7 142460405 142460405 1 + A T LUAD 142460411 + 142460391 142460431 41 CCTTGAGGGAGGCAAGGATTCATGTCAGGTGATTTGACCAA CCTTGAGGGAGGCATGGATTCATGTCAGGTGATTTGACCAA < 41bp 1 0.524298546390867 1 0.256332397460938 experiment 0.951402907218266 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460411 chr7:142460405 nonsynonymous SNV 0.985 5 15 hm5C_associated_SNPs_28188 0 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 14bp
chr7 142460405 142460405 1 + A T LUAD 142460416 + 142460396 142460436 41 AGGGAGGCAAGGATTCATGTCAGGTGATTTGACCAACCCTT AGGGAGGCATGGATTCATGTCAGGTGATTTGACCAACCCTT < 41bp 1 0.632401821723052 1 0.813504219055176 experiment 0.735196356553896 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460416 chr7:142460405 nonsynonymous SNV 0.985 5 10 hm5C_associated_SNPs_28189 0 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 14bp
chr7 138944042 138944042 1 + G T LUAD 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TTGATATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG < 41bp 1 0.452352415071035 1 0.50260978937149 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944042 nonsynonymous SNV 0.997 0 5 hm5C_associated_SNPs_28191 0 0 1 0 2 UBN2 chr7:138944013 3'AG 138944013 Downstream 30bp
chr7 138944042 138944042 1 + G T LUAD 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TTGATATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG < 41bp 1 0.452352415071035 1 0.50260978937149 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944042 nonsynonymous SNV 0.997 0 5 hm5C_associated_SNPs_28191 0 0 1 0 2 UBN2 chr7:138944116 5'GT 138944116 Upstream 75bp
chr10 93695424 93695424 1 + C T LUAD 93695421 + 93695401 93695441 41 TTTGTTATTTCAGGCTAGATCGCCTTTTTATTTTACTGGAT TTTGTTATTTCAGGCTAGATCGCTTTTTTATTTTACTGGAT < 41bp 1 0.25018245083059 1 0.335076570510864 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93695421 chr10:93695424 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_28194 0 0 1 0 1 BTAF1 chr10:93695414 3'AG 93695414 Downstream 11bp
chrX 128691359 128691359 1 + C A LUAD 128691345 + 128691325 128691365 41 GGGGACTGGATCAGAGAGCGCCGCTTTGAAATCCCTGATGA GGGGACTGGATCAGAGAGCGCCGCTTTGAAATCCATGATGA < 41bp 1 0.302005378584358 1 0.0591717958450317 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128691345 chrX:128691359 nonsynonymous SNV 0.999 3 35 hm5C_associated_SNPs_28195 0 0 1 0 2 OCRL chrX:128691302 3'AG 128691302 Downstream 58bp
chrX 128691359 128691359 1 + C A LUAD 128691345 + 128691325 128691365 41 GGGGACTGGATCAGAGAGCGCCGCTTTGAAATCCCTGATGA GGGGACTGGATCAGAGAGCGCCGCTTTGAAATCCATGATGA < 41bp 1 0.302005378584358 1 0.0591717958450317 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128691345 chrX:128691359 nonsynonymous SNV 0.999 3 35 hm5C_associated_SNPs_28195 0 0 1 0 2 OCRL chrX:128691412 5'GT 128691412 Upstream 54bp
chr7 129096290 129096290 1 + G T LUAD 129096284 + 129096264 129096304 41 CCTGTTTCTTCCTTAGTTTACCCTCGGTGGATTTGAGCATC CCTGTTTCTTCCTTAGTTTACCCTCGTTGGATTTGAGCATC < 41bp 1 0.128652408149574 1 0.0369439125061035 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129096284 chr7:129096290 nonsynonymous SNV 0.990 5 27 hm5C_associated_SNPs_28203 0 0 1 0 1 STRIP2 chr7:129096280 3'AG 129096280 Downstream 11bp
chr8 100182324 100182324 1 + C T LUAD 100182330 + 100182310 100182350 41 GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAGC GATCTTACTGCTTATCTGTACCAGTTATTCCCTCTTTCAGC < 41bp 1 0.0768963438340991 1 0.0688380897045135 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100182330 chr8:100182324 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_28204 0 0 1 0 2 VPS13B chr8:100182267 3'AG 100182267 Downstream 58bp
chr8 100182324 100182324 1 + C T LUAD 100182330 + 100182310 100182350 41 GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAGC GATCTTACTGCTTATCTGTACCAGTTATTCCCTCTTTCAGC < 41bp 1 0.0768963438340991 1 0.0688380897045135 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100182330 chr8:100182324 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_28204 0 0 1 0 2 VPS13B chr8:100182391 5'GT 100182391 Upstream 68bp
chr17 78081599 78081599 1 + C A LUAD 78081601 + 78081581 78081621 41 GTCTCCTGCATGTCCCAGCCCGGTGCGAACCTCTACGGGTC GTCTCCTGCATGTCCCAGACCGGTGCGAACCTCTACGGGTC < 41bp 1 0.522450283279313 1 0.527576923370361 experiment 0.955099433441374 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78081601 chr17:78081599 nonsynonymous SNV 0.019 1 19 hm5C_associated_SNPs_28205 0 0 1 0 2 GAA chr17:78081599 3'AG 78081599 Downstream 1bp
chr17 78081599 78081599 1 + C A LUAD 78081601 + 78081581 78081621 41 GTCTCCTGCATGTCCCAGCCCGGTGCGAACCTCTACGGGTC GTCTCCTGCATGTCCCAGACCGGTGCGAACCTCTACGGGTC < 41bp 1 0.522450283279313 1 0.527576923370361 experiment 0.955099433441374 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78081601 chr17:78081599 nonsynonymous SNV 0.019 1 19 hm5C_associated_SNPs_28205 0 0 1 0 2 GAA chr17:78081695 5'GT 78081695 Upstream 97bp
chr17 4799509 4799509 1 + C T LUAD 4799505 + 4799485 4799525 41 CAGTCCTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCGA CAGTCCTTTGCCGACCTCCCCCACTGCCCTCTGCTGGTCGA < 41bp 1 0.138146715675961 1 0.055078387260437 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799505 chr17:4799509 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_28207 0 0 1 0 1 MINK1 chr17:4799488 3'AG 4799488 Downstream 22bp
chr17 4799509 4799509 1 + C T LUAD 4799508 + 4799488 4799528 41 TCCTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCGACCT TCCTTTGCCGACCTCCCCCACTGCCCTCTGCTGGTCGACCT < 41bp 1 0.348751956886046 1 0.142670273780823 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799508 chr17:4799509 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_28208 0 0 1 0 1 MINK1 chr17:4799488 3'AG 4799488 Downstream 22bp
chrX 48457770 48457770 1 + G T LUAD 48457763 + 48457743 48457783 41 CTTTGAGGATGATCCTCGGGCCCTGGGGGCCCGTGGGCACC CTTTGAGGATGATCCTCGGGCCCTGGGTGCCCGTGGGCACC < 41bp 1 0.141088548628494 1 0.0524393320083618 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457763 chrX:48457770 synonymous SNV . 0 28 hm5C_associated_SNPs_28209 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 81bp
chrX 48457770 48457770 1 + G T LUAD 48457772 + 48457752 48457792 41 TGATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTG TGATCCTCGGGCCCTGGGTGCCCGTGGGCACCGTCGTTCTG < 41bp 1 0.36102192554811 1 0.0421481132507324 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457772 chrX:48457770 synonymous SNV . 0 19 hm5C_associated_SNPs_28210 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 81bp
chrX 48457770 48457770 1 + G T LUAD 48457773 + 48457753 48457793 41 GATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGT GATCCTCGGGCCCTGGGTGCCCGTGGGCACCGTCGTTCTGT < 41bp 1 0.38482027895827 1 0.409545600414276 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457773 chrX:48457770 synonymous SNV . 0 18 hm5C_associated_SNPs_28211 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 81bp
chrX 48457770 48457770 1 + G T LUAD 48457774 + 48457754 48457794 41 ATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGTC ATCCTCGGGCCCTGGGTGCCCGTGGGCACCGTCGTTCTGTC < 41bp 1 0.762462479464891 1 0.815609097480774 experiment 0.475075041070219 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457774 chrX:48457770 synonymous SNV . 0 17 hm5C_associated_SNPs_28212 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 81bp
chr7 43590134 43590134 1 + C A LUAD 43590119 + 43590099 43590139 41 ACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGCGGGTG ACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGAGGGTG < 41bp 1 0.259627348693162 1 0.148863166570663 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43590119 chr7:43590134 synonymous SNV . 0 36 hm5C_associated_SNPs_28214 0 0 0 0 2 HECW1 chr7:43590044 3'AG 43590044 Downstream 91bp
chr7 43590134 43590134 1 + C A LUAD 43590119 + 43590099 43590139 41 ACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGCGGGTG ACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGAGGGTG < 41bp 1 0.259627348693162 1 0.148863166570663 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43590119 chr7:43590134 synonymous SNV . 0 36 hm5C_associated_SNPs_28214 0 0 0 0 2 HECW1 chr7:43590190 5'GT 43590190 Upstream 57bp
chr2 239038812 239038812 1 + G T LUAD 239038799 + 239038779 239038819 41 GGAGCTCAGGCCCCACGGAGCAGGCGGCCTGGAGGTACTCA GGAGCTCAGGCCCCACGGAGCAGGCGGCCTGGATGTACTCA < 41bp 1 0.560728846178556 1 0.92312479019165 experiment 0.878542307642888 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ESPNL ENSG00000144488 CDS Human protein_coding chr2:239038799 chr2:239038812 nonsynonymous SNV 0.596 2 34 hm5C_associated_SNPs_28215 0 0 0 0 1 ESPNL chr2:239038769 3'AG 239038769 Downstream 44bp
chr9 137701052 137701052 1 + A T LUAD 137701041 + 137701021 137701061 41 TTCTCTAGGGCGAGAAAGGCCCACAAGGCCCAGCTGGCCGA TTCTCTAGGGCGAGAAAGGCCCACAAGGCCCTGCTGGCCGA < 41bp 1 0.270570115716143 1 0.309172600507736 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137701041 chr9:137701052 synonymous SNV . 0 32 hm5C_associated_SNPs_28217 0 0 0 0 2 COL5A1 chr9:137701029 3'AG 137701029 Downstream 24bp
chr9 137701052 137701052 1 + A T LUAD 137701041 + 137701021 137701061 41 TTCTCTAGGGCGAGAAAGGCCCACAAGGCCCAGCTGGCCGA TTCTCTAGGGCGAGAAAGGCCCACAAGGCCCTGCTGGCCGA < 41bp 1 0.270570115716143 1 0.309172600507736 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137701041 chr9:137701052 synonymous SNV . 0 32 hm5C_associated_SNPs_28217 0 0 0 0 2 COL5A1 chr9:137701136 5'GT 137701136 Upstream 85bp
chr5 118877683 118877683 1 + G T LUAD 118877694 + 118877674 118877714 41 CTACGCCAAGCTCTGAAGGGCACACTACACTATTAATAAAA CTACGCCAATCTCTGAAGGGCACACTACACTATTAATAAAA < 41bp 1 0.153383024482577 1 0.0866518020629883 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118877694 chr5:118877683 nonsynonymous SNV 0.998 0 10 hm5C_associated_SNPs_28218 0 0 1 1 1 HSD17B4 chr5:118877600 3'AG 118877600 Downstream 84bp
chr7 95662047 95662047 1 + T C LUAD 95662038 + 95662018 95662058 41 GCTCATAACCTCATCACTGTCTCCACTGATGGCAAAATGTG GCTCATAACCTCATCACTGTCTCCACTGACGGCAAAATGTG < 41bp 1 0.785947299325063 1 0.969154834747314 experiment 0.428105401349874 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control DYNC1I1 ENSG00000158560 CDS Human protein_coding chr7:95662038 chr7:95662047 synonymous SNV . 0 30 hm5C_associated_SNPs_28219 0 0 0 0 2 DYNC1I1 chr7:95661979 3'AG 95661979 Downstream 69bp
chr7 95662047 95662047 1 + T C LUAD 95662038 + 95662018 95662058 41 GCTCATAACCTCATCACTGTCTCCACTGATGGCAAAATGTG GCTCATAACCTCATCACTGTCTCCACTGACGGCAAAATGTG < 41bp 1 0.785947299325063 1 0.969154834747314 experiment 0.428105401349874 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control DYNC1I1 ENSG00000158560 CDS Human protein_coding chr7:95662038 chr7:95662047 synonymous SNV . 0 30 hm5C_associated_SNPs_28219 0 0 0 0 2 DYNC1I1 chr7:95662092 5'GT 95662092 Upstream 46bp
chr7 129064950 129064950 1 + A T LUAD 129064943 + 129064923 129064963 41 TTTACAATGCTCCTGAGGGTCGCTATAAGCAGGATGTCTAC TTTACAATGCTCCTGAGGGTCGCTATATGCAGGATGTCTAC < 41bp 1 0.606020587181843 1 0.382711678743362 experiment 0.787958825636313 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064943 chr7:129064950 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_28220 0 0 0 0 2 AHCYL2 chr7:129064904 3'AG 129064904 Downstream 47bp
chr7 129064950 129064950 1 + A T LUAD 129064943 + 129064923 129064963 41 TTTACAATGCTCCTGAGGGTCGCTATAAGCAGGATGTCTAC TTTACAATGCTCCTGAGGGTCGCTATATGCAGGATGTCTAC < 41bp 1 0.606020587181843 1 0.382711678743362 experiment 0.787958825636313 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064943 chr7:129064950 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_28220 0 0 0 0 2 AHCYL2 chr7:129064982 5'GT 129064982 Upstream 33bp
chr15 73468860 73468860 1 + G T LUAD 73468840 + 73468820 73468860 41 GACTGGAAAACCAACTCCAACTGTGAAGTGGGTCAAAAATG GACTGGAAAACCAACTCCAACTGTGAAGTGGGTCAAAAATT < 41bp 1 0.115731641791341 1 0.205606609582901 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NEO1 ENSG00000067141 CDS Human protein_coding chr15:73468840 chr15:73468860 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_28222 0 0 1 0 1 NEO1 chr15:73468898 5'GT 73468898 Upstream 39bp
chr20 62521253 62521253 1 + A T LUAD 62521246 + 62521226 62521266 41 GAACGGCAGTGACAACCTCCCTTCCTCAGCGGGGAGTGGTG GAACGGCAGTGACAACCTCCCTTCCTCTGCGGGGAGTGGTG < 41bp 1 0.232890386959676 1 0.042797327041626 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TPD52L2 ENSG00000101150 CDS Human protein_coding chr20:62521246 chr20:62521253 synonymous SNV 0.001 0 28 hm5C_associated_SNPs_28223 0 0 1 0 1 TPD52L2 chr20:62521203 3'AG 62521203 Downstream 51bp
chr2 33526644 33526644 1 + T A LUAD 33526650 + 33526630 33526670 41 CAGTGCAGGAACACTGAGGGCTCTTTTCAATGTGTGTGTGA CAGTGCAGGAACACAGAGGGCTCTTTTCAATGTGTGTGTGA < 41bp 1 0.131324227337688 1 0.0397268831729889 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33526650 chr2:33526644 synonymous SNV . 0 15 hm5C_associated_SNPs_28224 0 0 1 0 2 LTBP1 chr2:33526589 3'AG 33526589 Downstream 56bp
chr2 33526644 33526644 1 + T A LUAD 33526650 + 33526630 33526670 41 CAGTGCAGGAACACTGAGGGCTCTTTTCAATGTGTGTGTGA CAGTGCAGGAACACAGAGGGCTCTTTTCAATGTGTGTGTGA < 41bp 1 0.131324227337688 1 0.0397268831729889 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33526650 chr2:33526644 synonymous SNV . 0 15 hm5C_associated_SNPs_28224 0 0 1 0 2 LTBP1 chr2:33526711 5'GT 33526711 Upstream 68bp
chr2 33526644 33526644 1 + T A LUAD 33526652 + 33526632 33526672 41 GTGCAGGAACACTGAGGGCTCTTTTCAATGTGTGTGTGACC GTGCAGGAACACAGAGGGCTCTTTTCAATGTGTGTGTGACC < 41bp 1 0.0400721717700368 1 0.0221834778785706 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33526652 chr2:33526644 synonymous SNV . 0 13 hm5C_associated_SNPs_28225 0 0 1 0 2 LTBP1 chr2:33526589 3'AG 33526589 Downstream 56bp
chr2 33526644 33526644 1 + T A LUAD 33526652 + 33526632 33526672 41 GTGCAGGAACACTGAGGGCTCTTTTCAATGTGTGTGTGACC GTGCAGGAACACAGAGGGCTCTTTTCAATGTGTGTGTGACC < 41bp 1 0.0400721717700368 1 0.0221834778785706 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33526652 chr2:33526644 synonymous SNV . 0 13 hm5C_associated_SNPs_28225 0 0 1 0 2 LTBP1 chr2:33526711 5'GT 33526711 Upstream 68bp
chr5 70922501 70922501 1 + G C LUAD 70922516 + 70922496 70922536 41 AGGAGGAGCCTATGTGCCTGCCATGGCTGATGAAAACATCA AGGAGCAGCCTATGTGCCTGCCATGGCTGATGAAAACATCA < 41bp 1 0.116369224268291 1 0.216548889875412 experiment 1 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control MCCC2 ENSG00000131844 CDS Human protein_coding chr5:70922516 chr5:70922501 nonsynonymous SNV 0.735 5 6 hm5C_associated_SNPs_28226 0 0 0 0 2 MCCC2 chr5:70922467 3'AG 70922467 Downstream 35bp
chr5 70922501 70922501 1 + G C LUAD 70922516 + 70922496 70922536 41 AGGAGGAGCCTATGTGCCTGCCATGGCTGATGAAAACATCA AGGAGCAGCCTATGTGCCTGCCATGGCTGATGAAAACATCA < 41bp 1 0.116369224268291 1 0.216548889875412 experiment 1 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control MCCC2 ENSG00000131844 CDS Human protein_coding chr5:70922516 chr5:70922501 nonsynonymous SNV 0.735 5 6 hm5C_associated_SNPs_28226 0 0 0 0 2 MCCC2 chr5:70922580 5'GT 70922580 Upstream 80bp
chr20 39793983 39793983 1 + C G LUAD 39793996 + 39793976 39794016 41 GCATCCTCTACCTGGAGGACCCTGTGAACCACGTGAGGACT GCATCCTGTACCTGGAGGACCCTGTGAACCACGTGAGGACT < 41bp 1 0.0750093555860111 1 0.128345340490341 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39793996 chr20:39793983 synonymous SNV . 0 8 hm5C_associated_SNPs_28227 0 0 1 0 2 PLCG1 chr20:39793885 3'AG 39793885 Downstream 99bp
chr20 39793983 39793983 1 + C G LUAD 39793996 + 39793976 39794016 41 GCATCCTCTACCTGGAGGACCCTGTGAACCACGTGAGGACT GCATCCTGTACCTGGAGGACCCTGTGAACCACGTGAGGACT < 41bp 1 0.0750093555860111 1 0.128345340490341 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39793996 chr20:39793983 synonymous SNV . 0 8 hm5C_associated_SNPs_28227 0 0 1 0 2 PLCG1 chr20:39794007 5'GT 39794007 Upstream 25bp
chr11 61511089 61511089 1 + G C LUAD 61511075 + 61511055 61511095 41 GCTGTCGCCAGTGGTTGCGGCGGCGGCCCGCCAGGACCCGG GCTGTCGCCAGTGGTTGCGGCGGCGGCCCGCCAGCACCCGG < 41bp 1 0.622931357152978 1 0.871140837669373 experiment 0.754137285694045 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61511075 chr11:61511089 nonsynonymous SNV 0.807 3 35 hm5C_associated_SNPs_28228 0 0 1 0 1 DAGLA chr11:61511004 3'AG 61511004 Downstream 86bp
chr6 7579538 7579538 1 + G C LUAD 7579519 + 7579499 7579539 41 ATTCCACAGCTGAAAAATACCAAGATCGAAGTTTTGGAAGA ATTCCACAGCTGAAAAATACCAAGATCGAAGTTTTGGAACA < 41bp 1 0.699508612583298 1 0.532020032405853 experiment 0.600982774833404 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7579519 chr6:7579538 nonsynonymous SNV 1.000 5 40 hm5C_associated_SNPs_28235 0 0 1 0 1 DSP chr6:7579508 3'AG 7579508 Downstream 31bp
chr6 35715382 35715382 1 + G T LUAD 35715401 + 35715381 35715421 41 TGGCACAGAAGAATGACCTTCTCTATGACATTCTCAACTGC TTGCACAGAAGAATGACCTTCTCTATGACATTCTCAACTGC < 41bp 1 0.508400522349194 1 0.856901586055756 experiment 0.983198955301611 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ARMC12 ENSG00000157343 CDS Human protein_coding chr6:35715401 chr6:35715382 synonymous SNV . 0 2 hm5C_associated_SNPs_28236 0 0 0 0 2 ARMC12 chr6:35715353 3'AG 35715353 Downstream 30bp
chr6 35715382 35715382 1 + G T LUAD 35715401 + 35715381 35715421 41 TGGCACAGAAGAATGACCTTCTCTATGACATTCTCAACTGC TTGCACAGAAGAATGACCTTCTCTATGACATTCTCAACTGC < 41bp 1 0.508400522349194 1 0.856901586055756 experiment 0.983198955301611 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ARMC12 ENSG00000157343 CDS Human protein_coding chr6:35715401 chr6:35715382 synonymous SNV . 0 2 hm5C_associated_SNPs_28236 0 0 0 0 2 ARMC12 chr6:35715424 5'GT 35715424 Upstream 43bp
chr3 99897182 99897182 1 + G T LUAD 99897188 + 99897168 99897208 41 AACTTCTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGAA AACTTCTGGAAATGTGAGTGCTCAGTCTGTGCAAGTCAGAA < 41bp 1 0.206263214075979 1 0.100678890943527 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMSS1 ENSG00000184220 CDS Human protein_coding chr3:99897188 chr3:99897182 stopgain 0.997 1 15 hm5C_associated_SNPs_28237 0 0 1 0 1 CMSS1 chr3:99897149 3'AG 99897149 Downstream 34bp
chr3 99897182 99897182 1 + G T LUAD 99897190 + 99897170 99897210 41 CTTCTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGAATC CTTCTGGAAATGTGAGTGCTCAGTCTGTGCAAGTCAGAATC < 41bp 1 0.234602884200392 1 0.212208867073059 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CMSS1 ENSG00000184220 CDS Human protein_coding chr3:99897190 chr3:99897182 stopgain 0.997 1 13 hm5C_associated_SNPs_28238 0 0 1 0 1 CMSS1 chr3:99897149 3'AG 99897149 Downstream 34bp
chr8 99168328 99168328 1 + C T LUAD 99168348 + 99168328 99168368 41 CTTTCTGCTGTCCCTGGGAGCAGTTAACTCAAGACTGGGAG TTTTCTGCTGTCCCTGGGAGCAGTTAACTCAAGACTGGGAG < 41bp 1 0.210479933286171 1 0.39539235830307 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POP1 ENSG00000104356 CDS Human protein_coding chr8:99168348 chr8:99168328 nonsynonymous SNV 0.996 4 1 hm5C_associated_SNPs_28241 0 0 1 0 1 POP1 chr8:99168278 3'AG 99168278 Downstream 51bp
chr2 178378634 178378634 1 + C T LUAD 178378621 + 178378601 178378641 41 GAAGGGTGTTCAGTTTGCTCCTTTTTCTACATGCAGGTAAG GAAGGGTGTTCAGTTTGCTCCTTTTTCTACATGTAGGTAAG < 41bp 1 0.0302534778638718 1 0.102603435516357 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGPS ENSG00000018510 CDS Human protein_coding chr2:178378621 chr2:178378634 synonymous SNV . 0 34 hm5C_associated_SNPs_28242 0 0 1 0 1 AGPS chr2:178378636 5'GT 178378636 Upstream 3bp
chr12 53673605 53673605 1 + C T LUAD 53673618 + 53673598 53673638 41 CCTGCCACATCACCCAGCTCCTCCTGACCCTCGGCTGTCCC CCTGCCATATCACCCAGCTCCTCCTGACCCTCGGCTGTCCC < 41bp 1 0.287850566457156 1 0.0792027711868286 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53673618 chr12:53673605 synonymous SNV . 0 8 hm5C_associated_SNPs_28243 0 0 1 0 2 ESPL1 chr12:53673516 3'AG 53673516 Downstream 90bp
chr12 53673605 53673605 1 + C T LUAD 53673618 + 53673598 53673638 41 CCTGCCACATCACCCAGCTCCTCCTGACCCTCGGCTGTCCC CCTGCCATATCACCCAGCTCCTCCTGACCCTCGGCTGTCCC < 41bp 1 0.287850566457156 1 0.0792027711868286 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53673618 chr12:53673605 synonymous SNV . 0 8 hm5C_associated_SNPs_28243 0 0 1 0 2 ESPL1 chr12:53673650 5'GT 53673650 Upstream 46bp
chr22 32445957 32445957 1 + G C LUAD 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGGACTCTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT < 41bp 1 0.24429579487854 1 0.242255538702011 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445957 nonsynonymous SNV 0.934 3 7 hm5C_associated_SNPs_28245 0 0 0 0 2 SLC5A1 chr22:32445930 3'AG 32445930 Downstream 28bp
chr22 32445957 32445957 1 + G C LUAD 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGGACTCTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT < 41bp 1 0.24429579487854 1 0.242255538702011 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445957 nonsynonymous SNV 0.934 3 7 hm5C_associated_SNPs_28245 0 0 0 0 2 SLC5A1 chr22:32446001 5'GT 32446001 Upstream 45bp
chr3 169985720 169985720 1 + G T LUAD 169985728 + 169985708 169985748 41 ATCTACCGTAGAGGTGCACGCCGCTGGAGAAAGCTTTATTG ATCTACCGTAGATGTGCACGCCGCTGGAGAAAGCTTTATTG < 41bp 1 0.400720388640066 1 0.367991238832474 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:169985728 chr3:169985720 nonsynonymous SNV 0.977 5 13 hm5C_associated_SNPs_28246 0 0 1 0 1 PRKCI chr3:169985703 3'AG 169985703 Downstream 18bp
chr1 183086479 183086479 1 + A C LUAD 183086473 + 183086453 183086493 41 AGATGAGGATGGGTGGCGTGCGGAACAGAGAGATGGCTCTG AGATGAGGATGGGTGGCGTGCGGAACCGAGAGATGGCTCTG < 41bp 1 0.728700067089477 1 0.793989658355713 experiment 0.542599865821046 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183086473 chr1:183086479 nonsynonymous SNV 0.991 1 27 hm5C_associated_SNPs_28247 0 0 1 0 2 LAMC1 chr1:183086455 3'AG 183086455 Downstream 25bp
chr1 183086479 183086479 1 + A C LUAD 183086473 + 183086453 183086493 41 AGATGAGGATGGGTGGCGTGCGGAACAGAGAGATGGCTCTG AGATGAGGATGGGTGGCGTGCGGAACCGAGAGATGGCTCTG < 41bp 1 0.728700067089477 1 0.793989658355713 experiment 0.542599865821046 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183086473 chr1:183086479 nonsynonymous SNV 0.991 1 27 hm5C_associated_SNPs_28247 0 0 1 0 2 LAMC1 chr1:183086577 5'GT 183086577 Upstream 99bp
chr1 228246785 228246785 1 + C A LUAD 228246782 + 228246762 228246802 41 TGGTCGCAACCCGACTTCCGCGCCATCGGTGACTTCCTCAA TGGTCGCAACCCGACTTCCGCGCAATCGGTGACTTCCTCAA < 41bp 1 0.679636073045611 1 0.602344751358032 experiment 0.640727853908779 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WNT3A ENSG00000154342 CDS Human protein_coding chr1:228246782 chr1:228246785 synonymous SNV . 0 24 hm5C_associated_SNPs_28248 0 0 0 0 1 WNT3A chr1:228246687 3'AG 228246687 Downstream 99bp
chr1 39888078 39888078 1 + G A LUAD 39888071 + 39888051 39888091 41 TCAGAAAGAACAAGTGGATCCTCTTCAGATGAAATTGCAGC TCAGAAAGAACAAGTGGATCCTCTTCAAATGAAATTGCAGC < 41bp 1 0.0294362335129622 1 0.188499689102173 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39888071 chr1:39888078 synonymous SNV . 0 28 hm5C_associated_SNPs_28249 0 0 1 0 1 MACF1 chr1:39888046 3'AG 39888046 Downstream 33bp
chr9 134354714 134354714 1 + G T LUAD 134354717 + 134354697 134354737 41 AGAACAACTTATGTCTGGAGCAAGGTGACGTGACCGTGCCT AGAACAACTTATGTCTGTAGCAAGGTGACGTGACCGTGCCT < 41bp 1 0.42601534658305 1 0.883167505264282 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134354717 chr9:134354714 stopgain 0.594 0 18 hm5C_associated_SNPs_28250 0 0 1 0 1 PRRC2B chr9:134354639 3'AG 134354639 Downstream 76bp
chr3 184106393 184106393 1 + C A LUAD 184106407 + 184106387 184106427 41 CCCACCCCCAGCTGGGGGACCCCATGCAGGCTGATGGGCCC CCCACCACCAGCTGGGGGACCCCATGCAGGCTGATGGGCCC < 41bp 1 0.226098470986939 1 0.255955338478088 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHRD ENSG00000090539 CDS Human protein_coding chr3:184106407 chr3:184106393 nonsynonymous SNV 0.015 1 7 hm5C_associated_SNPs_28251 0 0 1 0 1 CHRD chr3:184106375 3'AG 184106375 Downstream 19bp
chr10 72300887 72300887 1 + G T LUAD 72300896 + 72300876 72300916 41 GAGGCCCTGCGGGCCGCCCTCTCCAAGGACCCAGGCACTGG GAGGCCCTGCGTGCCGCCCTCTCCAAGGACCCAGGCACTGG < 41bp 1 0.798284966316779 1 0.973130106925964 experiment 0.403430067366443 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72300896 chr10:72300887 synonymous SNV . 0 12 hm5C_associated_SNPs_28254 0 0 0 0 1 PALD1 chr10:72300858 3'AG 72300858 Downstream 30bp
chr12 104336857 104336857 1 + A T LUAD 104336862 + 104336842 104336882 41 AATTTTGTAGGCTGAATCTTCTCCATTTGTTGAGCGACTTC AATTTTGTAGGCTGATTCTTCTCCATTTGTTGAGCGACTTC < 41bp 1 0.756985631313711 1 0.880870580673218 experiment 0.486028737372578 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104336862 chr12:104336857 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_28255 0 0 1 0 1 HSP90B1 chr12:104336852 3'AG 104336852 Downstream 6bp
chr12 110032875 110032875 1 + G T LUAD 110032880 + 110032860 110032900 41 CTGAATGCCCTCGGCGTGGGCCACGCCTCTCTGGACCAGCT CTGAATGCCCTCGGCTTGGGCCACGCCTCTCTGGACCAGCT < 41bp 1 0.181759588585899 1 0.105199068784714 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MVK ENSG00000110921 CDS Human protein_coding chr12:110032880 chr12:110032875 nonsynonymous SNV 0.917 5 16 hm5C_associated_SNPs_28260 0 0 1 0 1 MVK chr12:110032833 3'AG 110032833 Downstream 43bp
chrX 135067800 135067800 1 + G T LUAD 135067817 + 135067797 135067837 41 GGCGGCGGAGAGGCTAGAGCCATGGACGAGGAGATCGTGTC GGCTGCGGAGAGGCTAGAGCCATGGACGAGGAGATCGTGTC < 41bp 1 0.714188838809739 1 0.718156456947327 experiment 0.571622322380523 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135067817 chrX:135067800 nonsynonymous SNV 0.125 2 4 hm5C_associated_SNPs_28261 0 0 0 0 1 SLC9A6 chrX:135067762 3'AG 135067762 Downstream 39bp
chr10 75526854 75526854 1 + C G LUAD 75526835 + 75526815 75526855 41 GCTGAGTGTGCAGGGAAGCTCTTTCTATTCCATACATCCCT GCTGAGTGTGCAGGGAAGCTCTTTCTATTCCATACATCCGT < 41bp 1 0.118603492456802 1 0.069804459810257 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75526835 chr10:75526854 nonsynonymous SNV 0.995 4 40 hm5C_associated_SNPs_28262 0 0 1 0 2 SEC24C chr10:75526812 3'AG 75526812 Downstream 43bp
chr10 75526854 75526854 1 + C G LUAD 75526835 + 75526815 75526855 41 GCTGAGTGTGCAGGGAAGCTCTTTCTATTCCATACATCCCT GCTGAGTGTGCAGGGAAGCTCTTTCTATTCCATACATCCGT < 41bp 1 0.118603492456802 1 0.069804459810257 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75526835 chr10:75526854 nonsynonymous SNV 0.995 4 40 hm5C_associated_SNPs_28262 0 0 1 0 2 SEC24C chr10:75526928 5'GT 75526928 Upstream 75bp
chr10 75526854 75526854 1 + C G LUAD 75526839 + 75526819 75526859 41 AGTGTGCAGGGAAGCTCTTTCTATTCCATACATCCCTGCCC AGTGTGCAGGGAAGCTCTTTCTATTCCATACATCCGTGCCC < 41bp 1 0.306353422549507 1 0.418636053800583 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75526839 chr10:75526854 nonsynonymous SNV 0.995 4 36 hm5C_associated_SNPs_28263 0 0 1 0 2 SEC24C chr10:75526812 3'AG 75526812 Downstream 43bp
chr10 75526854 75526854 1 + C G LUAD 75526839 + 75526819 75526859 41 AGTGTGCAGGGAAGCTCTTTCTATTCCATACATCCCTGCCC AGTGTGCAGGGAAGCTCTTTCTATTCCATACATCCGTGCCC < 41bp 1 0.306353422549507 1 0.418636053800583 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75526839 chr10:75526854 nonsynonymous SNV 0.995 4 36 hm5C_associated_SNPs_28263 0 0 1 0 2 SEC24C chr10:75526928 5'GT 75526928 Upstream 75bp
chr21 30701833 30701833 1 + G A LUAD 30701844 + 30701824 30701864 41 ATGCACAACGGATAATTTCACTGTCTCGAAATGATTTTCAG ATGCACAACAGATAATTTCACTGTCTCGAAATGATTTTCAG < 41bp 1 0.146801378235727 1 0.127779573202133 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BACH1 ENSG00000156273 CDS Human protein_coding chr21:30701844 chr21:30701833 nonsynonymous SNV 0.998 1 10 hm5C_associated_SNPs_28264 0 0 1 0 1 BACH1 chr21:30701808 3'AG 30701808 Downstream 26bp
chr19 50905061 50905061 1 + C G LUAD 50905041 + 50905021 50905061 41 CTGTGACCCCACAGGCCCAGCGCAGCCTGTGCCTGGGGGGC CTGTGACCCCACAGGCCCAGCGCAGCCTGTGCCTGGGGGGG < 41bp 1 0.411253497335302 1 0.226867944002151 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905041 chr19:50905061 nonsynonymous SNV 0.005 0 41 hm5C_associated_SNPs_28265 0 0 1 0 1 POLD1 chr19:50905035 3'AG 50905035 Downstream 27bp
chr3 62189588 62189588 1 + T C LUAD 62189585 + 62189565 62189605 41 AGCCTATGTCCCGCGGGGACCGATTTTCTGAAGACAGCAGA AGCCTATGTCCCGCGGGGACCGACTTTCTGAAGACAGCAGA < 41bp 1 0.206628968477137 1 0.127856582403183 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:62189585 chr3:62189588 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_28266 0 0 0 0 1 PTPRG chr3:62189624 5'GT 62189624 Upstream 37bp
chr9 96026304 96026304 1 + G A LUAD 96026292 + 96026272 96026312 41 TCGACTTGGACGGGGACGCACCCGATGAAATTGCCACGTAT TCGACTTGGACGGGGACGCACCCGATGAAATTACCACGTAT < 41bp 1 0.463597956573964 1 0.39787894487381 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WNK2 ENSG00000165238 CDS Human protein_coding chr9:96026292 chr9:96026304 nonsynonymous SNV 0.081 4 33 hm5C_associated_SNPs_28267 0 0 1 0 1 WNK2 chr9:96026315 5'GT 96026315 Upstream 12bp
chr8 2092607 2092607 1 + C T LUAD 2092590 + 2092570 2092610 41 AACCTCTTCCGTCCAAAGACCTTGAATCTGACCTGCACGGT AACCTCTTCCGTCCAAAGACCTTGAATCTGACCTGCATGGT < 41bp 1 0.269236324021378 1 0.241920739412308 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2092590 chr8:2092607 nonsynonymous SNV 0.973 3 38 hm5C_associated_SNPs_28269 0 0 0 0 1 MYOM2 chr8:2092588 3'AG 2092588 Downstream 20bp
chr17 4621236 4621236 1 + G A LUAD 4621233 + 4621213 4621253 41 GCAGTTCGCCCCGGAGAAACCCGGCCCCCAGCCTTCAGCCG GCAGTTCGCCCCGGAGAAACCCGACCCCCAGCCTTCAGCCG < 41bp 1 0.324223571793496 1 0.182995229959488 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4621233 chr17:4621236 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_28270 0 0 0 0 2 ARRB2 chr17:4621183 3'AG 4621183 Downstream 54bp
chr17 4621236 4621236 1 + G A LUAD 4621233 + 4621213 4621253 41 GCAGTTCGCCCCGGAGAAACCCGGCCCCCAGCCTTCAGCCG GCAGTTCGCCCCGGAGAAACCCGACCCCCAGCCTTCAGCCG < 41bp 1 0.324223571793496 1 0.182995229959488 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4621233 chr17:4621236 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_28270 0 0 0 0 2 ARRB2 chr17:4621318 5'GT 4621318 Upstream 83bp
chr2 86705316 86705316 1 + T C LUAD 86705303 + 86705283 86705323 41 TTATTTGCAGGTGCTGCTTACAAGACTTTCTCTTGGCTAAA TTATTTGCAGGTGCTGCTTACAAGACTTTCTCTCGGCTAAA < 41bp 1 0.587086635341984 1 0.363666981458664 experiment 0.825826729316032 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KDM3A ENSG00000115548 CDS Human protein_coding chr2:86705303 chr2:86705316 nonsynonymous SNV 0.958 4 34 hm5C_associated_SNPs_28271 0 0 1 0 2 KDM3A chr2:86705293 3'AG 86705293 Downstream 24bp
chr2 86705316 86705316 1 + T C LUAD 86705303 + 86705283 86705323 41 TTATTTGCAGGTGCTGCTTACAAGACTTTCTCTTGGCTAAA TTATTTGCAGGTGCTGCTTACAAGACTTTCTCTCGGCTAAA < 41bp 1 0.587086635341984 1 0.363666981458664 experiment 0.825826729316032 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KDM3A ENSG00000115548 CDS Human protein_coding chr2:86705303 chr2:86705316 nonsynonymous SNV 0.958 4 34 hm5C_associated_SNPs_28271 0 0 1 0 2 KDM3A chr2:86705388 5'GT 86705388 Upstream 73bp
chr7 135291548 135291548 1 + C G LUAD 135291549 + 135291529 135291569 41 TTCGTCATGAAACAAGAATCCACATCTTGAATCTTCTCATT TTCGTCATGAAACAAGAATGCACATCTTGAATCTTCTCATT < 41bp 1 0.200635493628882 1 0.0451912581920624 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135291549 chr7:135291548 nonsynonymous SNV 0.999 1 20 hm5C_associated_SNPs_28272 0 0 1 0 1 NUP205 chr7:135291499 3'AG 135291499 Downstream 50bp
chr16 29994920 29994920 1 + T C LUAD 29994940 + 29994920 29994960 41 TCCGCCCGCCGCCGGGCCTACTGCCGTAACCGAGACCACTT CCCGCCCGCCGCCGGGCCTACTGCCGTAACCGAGACCACTT < 41bp 1 0.591002445458329 1 0.0880445539951324 experiment 0.817995109083342 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994940 chr16:29994920 nonsynonymous SNV 0.456 1 1 hm5C_associated_SNPs_28273 0 0 1 0 2 TAOK2 chr16:29994824 3'AG 29994824 Downstream 97bp
chr16 29994920 29994920 1 + T C LUAD 29994940 + 29994920 29994960 41 TCCGCCCGCCGCCGGGCCTACTGCCGTAACCGAGACCACTT CCCGCCCGCCGCCGGGCCTACTGCCGTAACCGAGACCACTT < 41bp 1 0.591002445458329 1 0.0880445539951324 experiment 0.817995109083342 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994940 chr16:29994920 nonsynonymous SNV 0.456 1 1 hm5C_associated_SNPs_28273 0 0 1 0 2 TAOK2 chr16:29994985 5'GT 29994985 Upstream 66bp
chr14 76638254 76638254 1 + C T LUAD 76638267 + 76638247 76638287 41 TAATCTTCTGCCCAAGTGGGCTCCTGATCATTGTTCTGAAG TAATCTTTTGCCCAAGTGGGCTCCTGATCATTGTTCTGAAG < 41bp 1 0.308944511158919 1 0.102438360452652 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GPATCH2L ENSG00000089916 CDS Human protein_coding chr14:76638267 chr14:76638254 synonymous SNV . 0 8 hm5C_associated_SNPs_28274 0 0 1 0 1 GPATCH2L chr14:76638186 3'AG 76638186 Downstream 69bp
chr2 46808133 46808133 1 + G T LUAD 46808147 + 46808127 46808167 41 TTTGATGAGGCTATCATAGCCATTTTAACTCCAAAGAAACA TTTGATTAGGCTATCATAGCCATTTTAACTCCAAAGAAACA < 41bp 1 0.0524082992696185 1 0.0465508103370667 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RHOQ ENSG00000119729 CDS Human protein_coding chr2:46808147 chr2:46808133 stopgain 1.000 1 7 hm5C_associated_SNPs_28276 0 0 0 0 1 RHOQ chr2:46808067 3'AG 46808067 Downstream 67bp
chr3 128973901 128973901 1 + C T LUAD 128973917 + 128973897 128973937 41 AGCTCTGCCCTCGTGTCTTCCTTGGTGTGTAGTTGCTGCTG AGCTTTGCCCTCGTGTCTTCCTTGGTGTGTAGTTGCTGCTG < 41bp 1 0.680499131686675 1 0.721078395843506 experiment 0.63900173662665 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COPG1 ENSG00000181789 CDS Human protein_coding chr3:128973917 chr3:128973901 nonsynonymous SNV 0.981 4 5 hm5C_associated_SNPs_28277 0 0 1 0 2 COPG1 chr3:128973828 3'AG 128973828 Downstream 74bp
chr3 128973901 128973901 1 + C T LUAD 128973917 + 128973897 128973937 41 AGCTCTGCCCTCGTGTCTTCCTTGGTGTGTAGTTGCTGCTG AGCTTTGCCCTCGTGTCTTCCTTGGTGTGTAGTTGCTGCTG < 41bp 1 0.680499131686675 1 0.721078395843506 experiment 0.63900173662665 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COPG1 ENSG00000181789 CDS Human protein_coding chr3:128973917 chr3:128973901 nonsynonymous SNV 0.981 4 5 hm5C_associated_SNPs_28277 0 0 1 0 2 COPG1 chr3:128973920 5'GT 128973920 Upstream 20bp
chr12 104056698 104056698 1 + G A LUAD 104056683 + 104056663 104056703 41 GAGATCACTGCCAAAAATGGCCGAATTTACACACTGACAGG GAGATCACTGCCAAAAATGGCCGAATTTACACACTAACAGG < 41bp 1 0.183100024314583 1 0.299348950386047 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient STAB2 ENSG00000136011 CDS Human protein_coding chr12:104056683 chr12:104056698 synonymous SNV . 0 36 hm5C_associated_SNPs_28279 0 0 0 0 2 STAB2 chr12:104056624 3'AG 104056624 Downstream 75bp
chr12 104056698 104056698 1 + G A LUAD 104056683 + 104056663 104056703 41 GAGATCACTGCCAAAAATGGCCGAATTTACACACTGACAGG GAGATCACTGCCAAAAATGGCCGAATTTACACACTAACAGG < 41bp 1 0.183100024314583 1 0.299348950386047 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient STAB2 ENSG00000136011 CDS Human protein_coding chr12:104056683 chr12:104056698 synonymous SNV . 0 36 hm5C_associated_SNPs_28279 0 0 0 0 2 STAB2 chr12:104056776 5'GT 104056776 Upstream 79bp
chr5 149758943 149758943 1 + G T LUAD 149758923 + 149758903 149758943 41 CCAGAGGAGGACTCAGGGAGCAGTGAGGAGGAGTCAGACAG CCAGAGGAGGACTCAGGGAGCAGTGAGGAGGAGTCAGACAT < 41bp 1 0.288371297607596 1 0.455209851264954 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149758923 chr5:149758943 nonsynonymous SNV 0.905 1 41 hm5C_associated_SNPs_28280 0 0 1 0 1 TCOF1 chr5:149758971 5'GT 149758971 Upstream 29bp
chr9 97823056 97823056 1 + C A LUAD 97823068 + 97823048 97823088 41 CAAAGCCTCCAGAGGACATACCACCTCCAGGATCAGGATGC CAAAGCCTACAGAGGACATACCACCTCCAGGATCAGGATGC < 41bp 1 0.0611932220857956 1 0.0364265739917755 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C9orf3 ENSG00000148120 CDS Human protein_coding chr9:97823068 chr9:97823056 synonymous SNV . 0 9 hm5C_associated_SNPs_28281 0 0 1 0 2 C9orf3 chr9:97822976 3'AG 97822976 Downstream 81bp
chr9 97823056 97823056 1 + C A LUAD 97823068 + 97823048 97823088 41 CAAAGCCTCCAGAGGACATACCACCTCCAGGATCAGGATGC CAAAGCCTACAGAGGACATACCACCTCCAGGATCAGGATGC < 41bp 1 0.0611932220857956 1 0.0364265739917755 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C9orf3 ENSG00000148120 CDS Human protein_coding chr9:97823068 chr9:97823056 synonymous SNV . 0 9 hm5C_associated_SNPs_28281 0 0 1 0 2 C9orf3 chr9:97823092 5'GT 97823092 Upstream 37bp
chr9 97823056 97823056 1 + C A LUAD 97823072 + 97823052 97823092 41 GCCTCCAGAGGACATACCACCTCCAGGATCAGGATGCAGAG GCCTACAGAGGACATACCACCTCCAGGATCAGGATGCAGAG < 41bp 1 0.710921041570209 1 0.915746986865997 experiment 0.578157916859583 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C9orf3 ENSG00000148120 CDS Human protein_coding chr9:97823072 chr9:97823056 synonymous SNV . 0 5 hm5C_associated_SNPs_28282 0 0 1 0 2 C9orf3 chr9:97822976 3'AG 97822976 Downstream 81bp
chr9 97823056 97823056 1 + C A LUAD 97823072 + 97823052 97823092 41 GCCTCCAGAGGACATACCACCTCCAGGATCAGGATGCAGAG GCCTACAGAGGACATACCACCTCCAGGATCAGGATGCAGAG < 41bp 1 0.710921041570209 1 0.915746986865997 experiment 0.578157916859583 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C9orf3 ENSG00000148120 CDS Human protein_coding chr9:97823072 chr9:97823056 synonymous SNV . 0 5 hm5C_associated_SNPs_28282 0 0 1 0 2 C9orf3 chr9:97823092 5'GT 97823092 Upstream 37bp
chr8 145065687 145065687 1 + A T LUAD 145065698 + 145065678 145065718 41 AAGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTTC AAGGGGGCTTCCCCCAGGGGCCATATCCCCAGAGCCCCTTC < 41bp 1 0.217840719579241 1 0.058133989572525 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065698 chr8:145065687 nonsynonymous SNV 0.746 0 10 hm5C_associated_SNPs_28283 0 0 1 0 1 GRINA chr8:145065770 5'GT 145065770 Upstream 84bp
chr8 145065687 145065687 1 + A T LUAD 145065699 + 145065679 145065719 41 AGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTTCC AGGGGGCTTCCCCCAGGGGCCATATCCCCAGAGCCCCTTCC < 41bp 1 0.179633150129164 1 0.106619387865067 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065699 chr8:145065687 nonsynonymous SNV 0.746 0 9 hm5C_associated_SNPs_28284 0 0 1 0 1 GRINA chr8:145065770 5'GT 145065770 Upstream 84bp
chr7 65610483 65610483 1 + A T LUAD 65610481 + 65610461 65610501 41 CCTGTGACTGCTGTGGAGATCCAGCTGGTGAGTGAAGGGCG CCTGTGACTGCTGTGGAGATCCTGCTGGTGAGTGAAGGGCG < 41bp 1 0.379314078455808 1 0.172158807516098 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CRCP ENSG00000241258;ENSG00000249319 CDS Human other chr7:65610481 chr7:65610483 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_28285 0 0 1 0 2 CRCP chr7:65610430 3'AG 65610430 Downstream 54bp
chr7 65610483 65610483 1 + A T LUAD 65610481 + 65610461 65610501 41 CCTGTGACTGCTGTGGAGATCCAGCTGGTGAGTGAAGGGCG CCTGTGACTGCTGTGGAGATCCTGCTGGTGAGTGAAGGGCG < 41bp 1 0.379314078455808 1 0.172158807516098 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CRCP ENSG00000241258;ENSG00000249319 CDS Human other chr7:65610481 chr7:65610483 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_28285 0 0 1 0 2 CRCP chr7:65610487 5'GT 65610487 Upstream 5bp
chr12 8196336 8196336 1 + C T LUAD 8196351 + 8196331 8196371 41 TTTCCCGAAAGAGAAGACACCCTCCAGATGATGATGTAAGT TTTCCTGAAAGAGAAGACACCCTCCAGATGATGATGTAAGT < 41bp 1 0.0199966193788424 1 0.0886635184288025 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXJ2 ENSG00000065970 CDS Human protein_coding chr12:8196351 chr12:8196336 stopgain 1.000 0 6 hm5C_associated_SNPs_28289 0 0 1 0 1 FOXJ2 chr12:8196365 5'GT 8196365 Upstream 30bp
chr12 58109617 58109617 1 + T A LUAD 58109602 + 58109582 58109622 41 ATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTATGTGCT ATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTAAGTGCT < 41bp 1 0.399978160173652 1 0.067376434803009 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient OS9 ENSG00000135506 CDS Human protein_coding chr12:58109602 chr12:58109617 stopgain 0.959 1 36 hm5C_associated_SNPs_28290 0 0 1 0 1 OS9 chr12:58109543 3'AG 58109543 Downstream 75bp
chr1 155030164 155030164 1 + G T LUAD 155030158 + 155030138 155030178 41 CTTTGACCTGCCAGCTGAGGCCAGGTGCACAGTGTGCATCT CTTTGACCTGCCAGCTGAGGCCAGGTTCACAGTGTGCATCT < 41bp 1 0.653876227764175 1 0.518568575382233 experiment 0.692247544471651 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155030158 chr1:155030164 nonsynonymous SNV 0.935 3 27 hm5C_associated_SNPs_28291 0 0 1 0 2 ADAM15 chr1:155030113 3'AG 155030113 Downstream 52bp
chr1 155030164 155030164 1 + G T LUAD 155030158 + 155030138 155030178 41 CTTTGACCTGCCAGCTGAGGCCAGGTGCACAGTGTGCATCT CTTTGACCTGCCAGCTGAGGCCAGGTTCACAGTGTGCATCT < 41bp 1 0.653876227764175 1 0.518568575382233 experiment 0.692247544471651 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155030158 chr1:155030164 nonsynonymous SNV 0.935 3 27 hm5C_associated_SNPs_28291 0 0 1 0 2 ADAM15 chr1:155030205 5'GT 155030205 Upstream 42bp
chr1 7796531 7796531 1 + G C LUAD 7796544 + 7796524 7796564 41 TTCCGCGGAATGACCCTACTCCACCTGGCCGCTGCCCAGGG TTCCGCGCAATGACCCTACTCCACCTGGCCGCTGCCCAGGG < 41bp 1 0.24502063818699 1 0.199866950511932 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMTA1 ENSG00000171735 CDS Human protein_coding chr1:7796544 chr1:7796531 nonsynonymous SNV 0.925 4 8 hm5C_associated_SNPs_28294 0 0 1 0 1 CAMTA1 chr1:7796600 5'GT 7796600 Upstream 70bp
chr3 73113183 73113183 1 + G T LUAD 73113185 + 73113165 73113205 41 ATGGGCCTGGGACACCCAGGCCACTTAATCGACCAAAGGTT ATGGGCCTGGGACACCCATGCCACTTAATCGACCAAAGGTT < 41bp 1 0.167232211452807 1 0.109184920787811 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP4R2 ENSG00000163605 CDS Human protein_coding chr3:73113185 chr3:73113183 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_28295 0 0 1 0 1 PPP4R2 chr3:73113154 3'AG 73113154 Downstream 30bp
chr3 73113183 73113183 1 + G T LUAD 73113186 + 73113166 73113206 41 TGGGCCTGGGACACCCAGGCCACTTAATCGACCAAAGGTTT TGGGCCTGGGACACCCATGCCACTTAATCGACCAAAGGTTT < 41bp 1 0.198451100200936 1 0.0275746285915375 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP4R2 ENSG00000163605 CDS Human protein_coding chr3:73113186 chr3:73113183 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_28296 0 0 1 0 1 PPP4R2 chr3:73113154 3'AG 73113154 Downstream 30bp
chr7 77398052 77398052 1 + G T LUAD 77398071 + 77398051 77398091 41 TGTGGGTTCGTCCAGGAGAACAAATGATCCCTGTGGCTGAT TTTGGGTTCGTCCAGGAGAACAAATGATCCCTGTGGCTGAT < 41bp 1 0.464481415391873 1 0.226339727640152 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RSBN1L ENSG00000187257 CDS Human protein_coding chr7:77398071 chr7:77398052 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_28297 0 0 1 0 1 RSBN1L chr7:77398120 5'GT 77398120 Upstream 69bp
chr12 27788039 27788039 1 + G C LUAD 27788020 + 27788000 27788040 41 CCCAGATTCAACAGCAGAAACGCTTGTTGAATGGCTTCAGA CCCAGATTCAACAGCAGAAACGCTTGTTGAATGGCTTCACA < 41bp 1 0.335757815552077 1 0.122868835926056 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27788020 chr12:27788039 nonsynonymous SNV 0.996 1 40 hm5C_associated_SNPs_28298 0 0 1 0 1 PPFIBP1 chr12:27788048 5'GT 27788048 Upstream 10bp
chr2 69379389 69379389 1 + G T LUAD 69379375 + 69379355 69379395 41 CTGGCTCTCCTCTGGTGGTTCTGGCCCCTCTGCTGCACTGT CTGGCTCTCCTCTGGTGGTTCTGGCCCCTCTGCTTCACTGT < 41bp 1 0.444622231719222 1 0.69121116399765 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANTXR1 ENSG00000169604 CDS Human protein_coding chr2:69379375 chr2:69379389 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_28299 0 0 1 0 2 ANTXR1 chr2:69379301 3'AG 69379301 Downstream 89bp
chr2 69379389 69379389 1 + G T LUAD 69379375 + 69379355 69379395 41 CTGGCTCTCCTCTGGTGGTTCTGGCCCCTCTGCTGCACTGT CTGGCTCTCCTCTGGTGGTTCTGGCCCCTCTGCTTCACTGT < 41bp 1 0.444622231719222 1 0.69121116399765 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANTXR1 ENSG00000169604 CDS Human protein_coding chr2:69379375 chr2:69379389 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_28299 0 0 1 0 2 ANTXR1 chr2:69379396 5'GT 69379396 Upstream 8bp
chr16 55523626 55523626 1 + G C LUAD 55523610 + 55523590 55523630 41 AAGGTGCCCCCTGTGTCTTCCCCTTCACTTTCCTGGGCAAC AAGGTGCCCCCTGTGTCTTCCCCTTCACTTTCCTGGCCAAC < 41bp 1 0.0395267515758999 1 0.265167653560638 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP2 ENSG00000087245 CDS Human protein_coding chr16:55523610 chr16:55523626 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_28300 0 0 0 0 1 MMP2 chr16:55523563 3'AG 55523563 Downstream 64bp
chr16 55523613 55523613 1 + T G LUAD 55523610 + 55523590 55523630 41 AAGGTGCCCCCTGTGTCTTCCCCTTCACTTTCCTGGGCAAC AAGGTGCCCCCTGTGTCTTCCCCGTCACTTTCCTGGGCAAC < 41bp 1 0.171694789715631 1 0.194870859384537 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP2 ENSG00000087245 CDS Human protein_coding chr16:55523610 chr16:55523613 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_28301 0 0 0 0 1 MMP2 chr16:55523563 3'AG 55523563 Downstream 51bp
chr2 24888641 24888641 1 + A G LUAD 24888633 + 24888613 24888653 41 AACAGCACGGAAAAGAGGCGCAGGGAGCAAGAAAATAAATA AACAGCACGGAAAAGAGGCGCAGGGAGCGAGAAAATAAATA < 41bp 1 0.326713472526236 1 0.638537108898163 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24888633 chr2:24888641 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_28302 0 0 1 0 1 NCOA1 chr2:24888618 3'AG 24888618 Downstream 24bp
chrX 49689821 49689821 1 + G A LUAD 49689825 + 49689805 49689845 41 AAAACAGGGCCACATAGCTGCCTTTCTATCAAGTCTCCCTA AAAACAGGGCCACATAACTGCCTTTCTATCAAGTCTCCCTA < 41bp 1 0.0990488133409374 1 0.0180214643478394 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLCN5 ENSG00000171365 UTR5 Human protein_coding chrX:49689825 chrX:49689821 . . 0 17 hm5C_associated_SNPs_28305 0 0 0 0 1 CLCN5 chrX:49689781 3'AG 49689781 Downstream 41bp
chr12 22811992 22811992 1 + A T LUAD 22811993 + 22811973 22812013 41 ATCCATGCTATTCATGCACACAATGGCTGGATCCCCAAATC ATCCATGCTATTCATGCACTCAATGGCTGGATCCCCAAATC < 41bp 1 0.487830885388965 1 0.56351363658905 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ETNK1 ENSG00000139163 CDS Human protein_coding chr12:22811993 chr12:22811992 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_28306 0 0 1 0 2 ETNK1 chr12:22811948 3'AG 22811948 Downstream 45bp
chr12 22811992 22811992 1 + A T LUAD 22811993 + 22811973 22812013 41 ATCCATGCTATTCATGCACACAATGGCTGGATCCCCAAATC ATCCATGCTATTCATGCACTCAATGGCTGGATCCCCAAATC < 41bp 1 0.487830885388965 1 0.56351363658905 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ETNK1 ENSG00000139163 CDS Human protein_coding chr12:22811993 chr12:22811992 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_28306 0 0 1 0 2 ETNK1 chr12:22812088 5'GT 22812088 Upstream 97bp
chr2 232577179 232577179 1 + G T LUAD 232577195 + 232577175 232577215 41 AGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTG AGATTAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTG < 41bp 1 0.704894242685545 1 0.243804097175598 experiment 0.59021151462891 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232577195 chr2:232577179 stopgain 1.000 0 5 hm5C_associated_SNPs_28309 0 0 1 0 2 PTMA chr2:232577153 3'AG 232577153 Downstream 27bp
chr2 232577179 232577179 1 + G T LUAD 232577195 + 232577175 232577215 41 AGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTG AGATTAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTG < 41bp 1 0.704894242685545 1 0.243804097175598 experiment 0.59021151462891 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232577195 chr2:232577179 stopgain 1.000 0 5 hm5C_associated_SNPs_28309 0 0 1 0 2 PTMA chr2:232577226 5'GT 232577226 Upstream 48bp
chr19 7620629 7620629 1 + C T LUAD 7620645 + 7620625 7620665 41 GCAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGA GCAGTGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGA < 41bp 1 0.255361449321523 1 0.466932684183121 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620645 chr19:7620629 nonsynonymous SNV 0.998 3 5 hm5C_associated_SNPs_28310 0 0 1 0 1 PNPLA6 chr19:7620649 5'GT 7620649 Upstream 21bp
chr19 7620629 7620629 1 + C T LUAD 7620646 + 7620626 7620666 41 CAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGAG CAGTGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGAG < 41bp 1 0.477437511039022 1 0.698079288005829 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620646 chr19:7620629 nonsynonymous SNV 0.998 3 4 hm5C_associated_SNPs_28311 0 0 1 0 1 PNPLA6 chr19:7620649 5'GT 7620649 Upstream 21bp
chr2 98263849 98263849 1 + A G LUAD 98263858 + 98263838 98263878 41 CTTCAGGCACCAGGGAAGACCCTAATTTAGTCCCCTCCATC CTTCAGGCACCGGGGAAGACCCTAATTTAGTCCCCTCCATC < 41bp 1 0.373566971168795 1 0.0602681934833527 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control COX5B ENSG00000135940 CDS Human protein_coding chr2:98263858 chr2:98263849 nonsynonymous SNV 0.996 2 12 hm5C_associated_SNPs_28313 0 0 1 0 2 COX5B chr2:98263807 3'AG 98263807 Downstream 43bp
chr2 98263849 98263849 1 + A G LUAD 98263858 + 98263838 98263878 41 CTTCAGGCACCAGGGAAGACCCTAATTTAGTCCCCTCCATC CTTCAGGCACCGGGGAAGACCCTAATTTAGTCCCCTCCATC < 41bp 1 0.373566971168795 1 0.0602681934833527 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control COX5B ENSG00000135940 CDS Human protein_coding chr2:98263858 chr2:98263849 nonsynonymous SNV 0.996 2 12 hm5C_associated_SNPs_28313 0 0 1 0 2 COX5B chr2:98263906 5'GT 98263906 Upstream 58bp
chr11 75115797 75115797 1 + A G LUAD 75115815 + 75115795 75115835 41 CCACGTGAGCATTGTGGAACCCAAAGATGAGATACTGCCCA CCGCGTGAGCATTGTGGAACCCAAAGATGAGATACTGCCCA < 41bp 1 0.660376493637025 1 0.40977081656456 experiment 0.679247012725949 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS3 ENSG00000149273 CDS Human protein_coding chr11:75115815 chr11:75115797 nonsynonymous SNV 0.881 0 3 hm5C_associated_SNPs_28314 0 0 1 0 1 RPS3 chr11:75115716 3'AG 75115716 Downstream 82bp
chr5 145843189 145843189 1 + C T LUAD 145843198 + 145843178 145843218 41 TTCAACTCCTGCTCCTACAGCCACACCTGTGCAAACCGTTC TTCAACTCCTGTTCCTACAGCCACACCTGTGCAAACCGTTC < 41bp 1 0.238172309680236 1 0.212365746498108 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145843198 chr5:145843189 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_28316 0 0 1 0 1 TCERG1 chr5:145843114 3'AG 145843114 Downstream 76bp
chr5 145843190 145843190 1 + T G LUAD 145843198 + 145843178 145843218 41 TTCAACTCCTGCTCCTACAGCCACACCTGTGCAAACCGTTC TTCAACTCCTGCGCCTACAGCCACACCTGTGCAAACCGTTC < 41bp 1 0.326662133112386 1 0.104477286338806 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145843198 chr5:145843190 synonymous SNV . 0 13 hm5C_associated_SNPs_28317 0 0 1 0 1 TCERG1 chr5:145843114 3'AG 145843114 Downstream 77bp
chr5 145843192 145843192 1 + C T LUAD 145843198 + 145843178 145843218 41 TTCAACTCCTGCTCCTACAGCCACACCTGTGCAAACCGTTC TTCAACTCCTGCTCTTACAGCCACACCTGTGCAAACCGTTC < 41bp 1 0.273269627167316 1 0.196782171726227 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145843198 chr5:145843192 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_28318 0 0 1 0 1 TCERG1 chr5:145843114 3'AG 145843114 Downstream 79bp
chr19 48982391 48982391 1 + G T LUAD 48982399 + 48982379 48982419 41 GGGCGGCTGTGAGTGTGGACCCCTTCTATGAGATGCTGGCA GGGCGGCTGTGATTGTGGACCCCTTCTATGAGATGCTGGCA < 41bp 1 0.0411827674464699 1 0.163322865962982 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CYTH2 ENSG00000105443 CDS Human protein_coding chr19:48982399 chr19:48982391 nonsynonymous SNV 0.999 2 13 hm5C_associated_SNPs_28320 0 0 1 0 1 CYTH2 chr19:48982380 3'AG 48982380 Downstream 12bp
chr14 68042641 68042641 1 + G A LUAD 68042632 + 68042612 68042652 41 GACTATGAGGCTGGAGGAACCAGACGGTTGCTTTCCTCCCA GACTATGAGGCTGGAGGAACCAGACGGTTACTTTCCTCCCA < 41bp 1 0.623821257232142 1 0.784024178981781 experiment 0.752357485535716 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68042632 chr14:68042641 synonymous SNV . 0 30 hm5C_associated_SNPs_28321 0 0 0 0 1 PLEKHH1 chr14:68042722 5'GT 68042722 Upstream 82bp
chr13 21205212 21205212 1 + G T LUAD 21205223 + 21205203 21205243 41 AGTGCAGCTGCAACCAATCTCTCAGCCCTGTATTATATGGT AGTGCAGCTTCAACCAATCTCTCAGCCCTGTATTATATGGT < 41bp 1 0.301966186391308 1 0.278211504220963 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control IFT88 ENSG00000032742 CDS Human protein_coding chr13:21205223 chr13:21205212 nonsynonymous SNV 0.983 2 10 hm5C_associated_SNPs_28325 0 0 0 0 2 IFT88 chr13:21205155 3'AG 21205155 Downstream 58bp
chr13 21205212 21205212 1 + G T LUAD 21205223 + 21205203 21205243 41 AGTGCAGCTGCAACCAATCTCTCAGCCCTGTATTATATGGT AGTGCAGCTTCAACCAATCTCTCAGCCCTGTATTATATGGT < 41bp 1 0.301966186391308 1 0.278211504220963 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control IFT88 ENSG00000032742 CDS Human protein_coding chr13:21205223 chr13:21205212 nonsynonymous SNV 0.983 2 10 hm5C_associated_SNPs_28325 0 0 0 0 2 IFT88 chr13:21205241 5'GT 21205241 Upstream 30bp
chr22 41913580 41913580 1 + C T LUAD 41913571 + 41913551 41913591 41 ATGGGTGCAGAAATTGGGGCCACCACTTCCGTGTTCCCTTA ATGGGTGCAGAAATTGGGGCCACCACTTCTGTGTTCCCTTA < 41bp 1 0.57625755383501 1 0.330467462539673 experiment 0.84748489232998 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41913571 chr22:41913580 synonymous SNV . 0 30 hm5C_associated_SNPs_28328 0 0 1 0 2 ACO2 chr22:41913531 3'AG 41913531 Downstream 50bp
chr22 41913580 41913580 1 + C T LUAD 41913571 + 41913551 41913591 41 ATGGGTGCAGAAATTGGGGCCACCACTTCCGTGTTCCCTTA ATGGGTGCAGAAATTGGGGCCACCACTTCTGTGTTCCCTTA < 41bp 1 0.57625755383501 1 0.330467462539673 experiment 0.84748489232998 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41913571 chr22:41913580 synonymous SNV . 0 30 hm5C_associated_SNPs_28328 0 0 1 0 2 ACO2 chr22:41913635 5'GT 41913635 Upstream 56bp
chr5 14291337 14291337 1 + G T LUAD 14291323 + 14291303 14291343 41 TCCAGCTGAGGCTGTTTGAACAGGATGCTGAGAAGGTAAAG TCCAGCTGAGGCTGTTTGAACAGGATGCTGAGAATGTAAAG < 41bp 1 0.550656694316824 1 0.449169427156448 experiment 0.898686611366353 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14291323 chr5:14291337 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_28329 0 0 1 0 1 TRIO chr5:14291337 5'GT 14291337 Upstream 1bp
chr17 45376752 45376752 1 + C G LUAD 45376744 + 45376724 45376764 41 GGCTACTACTGCAACTGTACCACGCGTACTGACACCTGCAT GGCTACTACTGCAACTGTACCACGCGTAGTGACACCTGCAT < 41bp 1 0.585493243958181 1 0.131999880075455 experiment 0.829013512083638 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45376744 chr17:45376752 nonsynonymous SNV 0.531 3 29 hm5C_associated_SNPs_28330 0 0 0 0 1 ITGB3 chr17:45376674 3'AG 45376674 Downstream 79bp
chr5 14280519 14280519 1 + C G LUAD 14280517 + 14280497 14280537 41 GACAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCCTGT GACAGGAGGATCTCAGGAGACTGATTTCCTATCTAGCCTGT < 41bp 1 0.317725191305255 1 0.159346163272858 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14280517 chr5:14280519 synonymous SNV . 0 23 hm5C_associated_SNPs_28333 0 0 1 0 2 TRIO chr5:14280431 3'AG 14280431 Downstream 89bp
chr5 14280519 14280519 1 + C G LUAD 14280517 + 14280497 14280537 41 GACAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCCTGT GACAGGAGGATCTCAGGAGACTGATTTCCTATCTAGCCTGT < 41bp 1 0.317725191305255 1 0.159346163272858 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14280517 chr5:14280519 synonymous SNV . 0 23 hm5C_associated_SNPs_28333 0 0 1 0 2 TRIO chr5:14280545 5'GT 14280545 Upstream 27bp
chr6 80816606 80816606 1 + G C LUAD 80816605 + 80816585 80816625 41 GATCCGGAGCCCCGGGAGTACGGTGAGCCCTGGGACTGCCC GATCCGGAGCCCCGGGAGTACCGTGAGCCCTGGGACTGCCC < 41bp 1 0.549059358109904 1 0.177960425615311 experiment 0.901881283780193 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BCKDHB ENSG00000083123 CDS Human protein_coding chr6:80816605 chr6:80816606 nonsynonymous SNV 0.071 3 22 hm5C_associated_SNPs_28334 0 0 0 0 1 BCKDHB chr6:80816606 5'GT 80816606 Upstream 1bp
chr2 73461511 73461511 1 + T A LUAD 73461503 + 73461483 73461523 41 CGGGCCGCTGAATAAGCTTCCAAAATGATGGTGAGTGGCGT CGGGCCGCTGAATAAGCTTCCAAAATGAAGGTGAGTGGCGT < 41bp 1 0.632401804951002 1 0.51884663105011 experiment 0.735196390097996 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCT7 ENSG00000135624 CDS Human protein_coding chr2:73461503 chr2:73461511 nonsynonymous SNV 1.000 0 29 hm5C_associated_SNPs_28335 0 0 1 0 1 CCT7 chr2:73461512 5'GT 73461512 Upstream 2bp
chr11 722496 722496 1 + C A LUAD 722478 + 722458 722498 41 TCCCGAGATGCCGTGGACTTCCTGCGCGGCCACCTGGTCCC TCCCGAGATGCCGTGGACTTCCTGCGCGGCCACCTGGTACC < 41bp 1 0.212450842040668 1 0.106298387050629 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722478 chr11:722496 nonsynonymous SNV . 0 39 hm5C_associated_SNPs_28336 0 0 1 0 2 EPS8L2 chr11:722401 3'AG 722401 Downstream 96bp
chr11 722496 722496 1 + C A LUAD 722478 + 722458 722498 41 TCCCGAGATGCCGTGGACTTCCTGCGCGGCCACCTGGTCCC TCCCGAGATGCCGTGGACTTCCTGCGCGGCCACCTGGTACC < 41bp 1 0.212450842040668 1 0.106298387050629 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722478 chr11:722496 nonsynonymous SNV . 0 39 hm5C_associated_SNPs_28336 0 0 1 0 2 EPS8L2 chr11:722549 5'GT 722549 Upstream 54bp
chr8 102381116 102381116 1 + G C LUAD 102381132 + 102381112 102381152 41 TCTTGATTCCACGTTCCCTCCACAAAATGCCTGGCGAAGCC TCTTCATTCCACGTTCCCTCCACAAAATGCCTGGCGAAGCC < 41bp 1 0.681426646932624 1 0.580490708351135 experiment 0.637146706134752 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NACAP1 ENSG00000228224 ncRNA_exonic Human transcribed_processed_pseudogene chr8:102381132 chr8:102381116 . . 0 5 hm5C_associated_SNPs_28337 0 0 0 0 1 NACAP1 chr8:102381023 3'AG 102381023 Downstream 94bp
chr6 33243778 33243778 1 + C T LUAD 33243758 + 33243738 33243778 41 CCAGGTGGAACGTGTGATCACCATTATGCAGAATCCACGCC CCAGGTGGAACGTGTGATCACCATTATGCAGAATCCACGCT < 41bp 1 0.144710303801097 1 0.0408784747123718 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243758 chr6:33243778 stopgain 0.998 1 41 hm5C_associated_SNPs_28338 0 0 1 2 2 RPS18 chr6:33243742 3'AG 33243742 Downstream 37bp
chr6 33243778 33243778 1 + C T LUAD 33243758 + 33243738 33243778 41 CCAGGTGGAACGTGTGATCACCATTATGCAGAATCCACGCC CCAGGTGGAACGTGTGATCACCATTATGCAGAATCCACGCT < 41bp 1 0.144710303801097 1 0.0408784747123718 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243758 chr6:33243778 stopgain 0.998 1 41 hm5C_associated_SNPs_28338 0 0 1 2 2 RPS18 chr6:33243843 5'GT 33243843 Upstream 66bp
chr6 33243778 33243778 1 + C T LUAD 33243759 + 33243739 33243779 41 CAGGTGGAACGTGTGATCACCATTATGCAGAATCCACGCCA CAGGTGGAACGTGTGATCACCATTATGCAGAATCCACGCTA < 41bp 1 0.34970026891938 1 0.157465636730194 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243759 chr6:33243778 stopgain 0.998 1 40 hm5C_associated_SNPs_28339 0 0 1 2 2 RPS18 chr6:33243742 3'AG 33243742 Downstream 37bp
chr6 33243778 33243778 1 + C T LUAD 33243759 + 33243739 33243779 41 CAGGTGGAACGTGTGATCACCATTATGCAGAATCCACGCCA CAGGTGGAACGTGTGATCACCATTATGCAGAATCCACGCTA < 41bp 1 0.34970026891938 1 0.157465636730194 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243759 chr6:33243778 stopgain 0.998 1 40 hm5C_associated_SNPs_28339 0 0 1 2 2 RPS18 chr6:33243843 5'GT 33243843 Upstream 66bp
chr6 33243778 33243778 1 + C T LUAD 33243772 + 33243752 33243792 41 TGATCACCATTATGCAGAATCCACGCCAGTACAAGATCCCA TGATCACCATTATGCAGAATCCACGCTAGTACAAGATCCCA < 41bp 1 0.26903442632418 1 0.031734436750412 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243772 chr6:33243778 stopgain 0.998 1 27 hm5C_associated_SNPs_28340 0 0 1 2 2 RPS18 chr6:33243742 3'AG 33243742 Downstream 37bp
chr6 33243778 33243778 1 + C T LUAD 33243772 + 33243752 33243792 41 TGATCACCATTATGCAGAATCCACGCCAGTACAAGATCCCA TGATCACCATTATGCAGAATCCACGCTAGTACAAGATCCCA < 41bp 1 0.26903442632418 1 0.031734436750412 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243772 chr6:33243778 stopgain 0.998 1 27 hm5C_associated_SNPs_28340 0 0 1 2 2 RPS18 chr6:33243843 5'GT 33243843 Upstream 66bp
chr1 44878341 44878341 1 + G T LUAD 44878350 + 44878330 44878370 41 TGCTGTCTCTGGCCTCATTTCTGATCGGGAAGCCTCATCTA TGCTGTCTCTGTCCTCATTTCTGATCGGGAAGCCTCATCTA < 41bp 1 0.407415379380952 1 0.265668570995331 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878350 chr1:44878341 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_28341 0 0 1 0 1 RNF220 chr1:44878394 5'GT 44878394 Upstream 54bp
chr1 95639405 95639405 1 + C T LUAD 95639425 + 95639405 95639445 41 CGCCTGCTTGCAGAGCTTTCCAGCCCGTTTGTGAATCAGCG TGCCTGCTTGCAGAGCTTTCCAGCCCGTTTGTGAATCAGCG < 41bp 1 0.282524786817786 1 0.437839716672897 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM56;TMEM56-RWDD3 ENSG00000152078;ENSG00000271092 CDS Human other chr1:95639425 chr1:95639405 nonsynonymous SNV 0.983 5 1 hm5C_associated_SNPs_28342 0 0 1 0 2 TMEM56;TMEM56-RWDD3 chr1:95639372 3'AG 95639372 Downstream 34bp
chr1 95639405 95639405 1 + C T LUAD 95639425 + 95639405 95639445 41 CGCCTGCTTGCAGAGCTTTCCAGCCCGTTTGTGAATCAGCG TGCCTGCTTGCAGAGCTTTCCAGCCCGTTTGTGAATCAGCG < 41bp 1 0.282524786817786 1 0.437839716672897 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM56;TMEM56-RWDD3 ENSG00000152078;ENSG00000271092 CDS Human other chr1:95639425 chr1:95639405 nonsynonymous SNV 0.983 5 1 hm5C_associated_SNPs_28342 0 0 1 0 2 TMEM56;TMEM56-RWDD3 chr1:95639445 5'GT 95639445 Upstream 41bp
chr7 142458515 142458515 1 + C T LUAD 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGTTC < 41bp 1 0.0638335406248415 1 0.0138239860534668 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458515 synonymous SNV . 0 39 hm5C_associated_SNPs_28344 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 36bp
chr7 142458515 142458515 1 + C T LUAD 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGTTC < 41bp 1 0.0638335406248415 1 0.0138239860534668 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458515 synonymous SNV . 0 39 hm5C_associated_SNPs_28344 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 51bp
chr7 142458515 142458515 1 + C T LUAD 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGTTCCCT < 41bp 1 0.0533824660682198 1 0.0353833734989166 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458515 synonymous SNV . 0 36 hm5C_associated_SNPs_28345 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 36bp
chr7 142458515 142458515 1 + C T LUAD 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGTTCCCT < 41bp 1 0.0533824660682198 1 0.0353833734989166 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458515 synonymous SNV . 0 36 hm5C_associated_SNPs_28345 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 51bp
chr7 142458515 142458515 1 + C T LUAD 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGTTCCCTC < 41bp 1 0.200873780227035 1 0.29887455701828 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458515 synonymous SNV . 0 35 hm5C_associated_SNPs_28346 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 36bp
chr7 142458515 142458515 1 + C T LUAD 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGTTCCCTC < 41bp 1 0.200873780227035 1 0.29887455701828 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458515 synonymous SNV . 0 35 hm5C_associated_SNPs_28346 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 51bp
chr7 142458515 142458515 1 + C T LUAD 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGCTACCACTTCTGTGGTGGTTCCCTCAT < 41bp 1 0.330790928006566 1 0.430681109428406 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458515 synonymous SNV . 0 33 hm5C_associated_SNPs_28347 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 36bp
chr7 142458515 142458515 1 + C T LUAD 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGCTACCACTTCTGTGGTGGTTCCCTCAT < 41bp 1 0.330790928006566 1 0.430681109428406 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458515 synonymous SNV . 0 33 hm5C_associated_SNPs_28347 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 51bp
chr7 142458515 142458515 1 + C T LUAD 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGGCTACCACTTCTGTGGTGGTTCCCTCATCAA < 41bp 1 0.575144250959476 1 0.257992476224899 experiment 0.849711498081047 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458515 synonymous SNV . 0 30 hm5C_associated_SNPs_28348 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 36bp
chr7 142458515 142458515 1 + C T LUAD 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGGCTACCACTTCTGTGGTGGTTCCCTCATCAA < 41bp 1 0.575144250959476 1 0.257992476224899 experiment 0.849711498081047 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458515 synonymous SNV . 0 30 hm5C_associated_SNPs_28348 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 51bp
chr7 142458515 142458515 1 + C T LUAD 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGGTGGTTCCCTCATCAACGAACAGTGGG < 41bp 1 0.0818983399359051 1 0.0328381359577179 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458515 synonymous SNV . 0 19 hm5C_associated_SNPs_28349 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 36bp
chr7 142458515 142458515 1 + C T LUAD 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGGTGGTTCCCTCATCAACGAACAGTGGG < 41bp 1 0.0818983399359051 1 0.0328381359577179 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458515 synonymous SNV . 0 19 hm5C_associated_SNPs_28349 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 51bp
chr7 142458515 142458515 1 + C T LUAD 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGGTGGTTCCCTCATCAACGAACAGTGGGT < 41bp 1 0.203610346380442 1 0.0446296334266663 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458515 synonymous SNV . 0 18 hm5C_associated_SNPs_28350 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 36bp
chr7 142458515 142458515 1 + C T LUAD 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGGTGGTTCCCTCATCAACGAACAGTGGGT < 41bp 1 0.203610346380442 1 0.0446296334266663 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458515 synonymous SNV . 0 18 hm5C_associated_SNPs_28350 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 51bp
chr7 142458515 142458515 1 + C T LUAD 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGGTGGTTCCCTCATCAACGAACAGTGGGTG < 41bp 1 0.438164266114676 1 0.178741157054901 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458515 synonymous SNV . 0 17 hm5C_associated_SNPs_28351 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 36bp
chr7 142458515 142458515 1 + C T LUAD 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGGTGGTTCCCTCATCAACGAACAGTGGGTG < 41bp 1 0.438164266114676 1 0.178741157054901 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458515 synonymous SNV . 0 17 hm5C_associated_SNPs_28351 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 51bp
chr7 142458515 142458515 1 + C T LUAD 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGGTGGTTCCCTCATCAACGAACAGTGGGTGGT < 41bp 1 0.463610792455264 1 0.690230071544647 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458515 synonymous SNV . 0 15 hm5C_associated_SNPs_28352 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 36bp
chr7 142458515 142458515 1 + C T LUAD 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGGTGGTTCCCTCATCAACGAACAGTGGGTGGT < 41bp 1 0.463610792455264 1 0.690230071544647 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458515 synonymous SNV . 0 15 hm5C_associated_SNPs_28352 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 51bp
chr7 142458515 142458515 1 + C T LUAD 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGGTGGTTCCCTCATCAACGAACAGTGGGTGGTATC < 41bp 1 0.659707343301228 1 0.734217405319214 experiment 0.680585313397543 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458515 synonymous SNV . 0 12 hm5C_associated_SNPs_28353 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 36bp
chr7 142458515 142458515 1 + C T LUAD 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGGTGGTTCCCTCATCAACGAACAGTGGGTGGTATC < 41bp 1 0.659707343301228 1 0.734217405319214 experiment 0.680585313397543 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458515 synonymous SNV . 0 12 hm5C_associated_SNPs_28353 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 51bp
chr7 142458515 142458515 1 + C T LUAD 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGTTCCCTCATCAACGAACAGTGGGTGGTATCAGC < 41bp 1 0.422738003417988 1 0.350324600934982 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458515 synonymous SNV . 0 9 hm5C_associated_SNPs_28354 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 36bp
chr7 142458515 142458515 1 + C T LUAD 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGTTCCCTCATCAACGAACAGTGGGTGGTATCAGC < 41bp 1 0.422738003417988 1 0.350324600934982 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458515 synonymous SNV . 0 9 hm5C_associated_SNPs_28354 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 51bp
chr7 142458515 142458515 1 + C T LUAD 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGTTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC < 41bp 1 0.452579643298597 1 0.509176731109619 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458515 synonymous SNV . 0 5 hm5C_associated_SNPs_28355 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 36bp
chr7 142458515 142458515 1 + C T LUAD 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGTTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC < 41bp 1 0.452579643298597 1 0.509176731109619 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458515 synonymous SNV . 0 5 hm5C_associated_SNPs_28355 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 51bp
chr15 40284993 40284993 1 + A T LUAD 40284974 + 40284954 40284994 41 GTTTTCCTCCACACAGGTCACTTAACTGGGATGGTTGGCAC GTTTTCCTCCACACAGGTCACTTAACTGGGATGGTTGGCTC < 41bp 1 0.41059667868121 1 0.739570796489716 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40284974 chr15:40284993 nonsynonymous SNV 0.997 4 40 hm5C_associated_SNPs_28359 0 0 1 0 2 EIF2AK4 chr15:40284970 3'AG 40284970 Downstream 24bp
chr15 40284993 40284993 1 + A T LUAD 40284974 + 40284954 40284994 41 GTTTTCCTCCACACAGGTCACTTAACTGGGATGGTTGGCAC GTTTTCCTCCACACAGGTCACTTAACTGGGATGGTTGGCTC < 41bp 1 0.41059667868121 1 0.739570796489716 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40284974 chr15:40284993 nonsynonymous SNV 0.997 4 40 hm5C_associated_SNPs_28359 0 0 1 0 2 EIF2AK4 chr15:40285049 5'GT 40285049 Upstream 57bp
chr10 35495854 35495854 1 + C T LUAD 35495841 + 35495821 35495861 41 AGCTGCCACTGGTGACATGCCAACTTACCAGATCCGAGCTC AGCTGCCACTGGTGACATGCCAACTTACCAGATTCGAGCTC < 41bp 1 0.757998793815295 1 0.352902233600616 experiment 0.484002412369411 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CREM ENSG00000095794 CDS Human protein_coding chr10:35495841 chr10:35495854 nonsynonymous SNV . 0 34 hm5C_associated_SNPs_28360 0 0 1 0 1 CREM chr10:35495823 3'AG 35495823 Downstream 32bp
chr18 55996235 55996235 1 + C T LUAD 55996248 + 55996228 55996268 41 GACGTGTCCTCGGAGTCGGACAATAACATCAGACAGATCAA GACGTGTTCTCGGAGTCGGACAATAACATCAGACAGATCAA < 41bp 1 0.297398104240171 1 0.214750647544861 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NEDD4L ENSG00000049759 CDS Human protein_coding chr18:55996248 chr18:55996235 nonsynonymous SNV 0.749 0 8 hm5C_associated_SNPs_28362 0 0 1 0 1 NEDD4L chr18:55996227 3'AG 55996227 Downstream 9bp
chr11 66282099 66282099 1 + C T LUAD 66282089 + 66282069 66282109 41 CTCAGACCCTACTTCAAGTTCAGCCTGCCCCAATTGCCTCC CTCAGACCCTACTTCAAGTTCAGCCTGCCCTAATTGCCTCC < 41bp 1 0.3232065576832 1 0.234434396028519 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66282089 chr11:66282099 stopgain 0.362 0 31 hm5C_associated_SNPs_28363 0 0 0 0 1 BBS1 chr11:66282149 5'GT 66282149 Upstream 51bp
chr14 105355939 105355939 1 + G T LUAD 105355938 + 105355918 105355958 41 ACGGCTCCCCCAAACACACACGCTCCCACACCTCAACAGCC ACGGCTCCCCCAAACACACACTCTCCCACACCTCAACAGCC < 41bp 1 0.0273809335531152 1 0.127631634473801 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP170B ENSG00000099814 CDS Human protein_coding chr14:105355938 chr14:105355939 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_28364 0 0 1 0 1 CEP170B chr14:105355852 3'AG 105355852 Downstream 88bp
chr1 156876638 156876638 1 + G A LUAD 156876640 + 156876620 156876660 41 TGCGATCCCCAGACTGGAGCCTGCTTCTGCCCCGCAGAGAG TGCGATCCCCAGACTGGAACCTGCTTCTGCCCCGCAGAGAG < 41bp 1 0.391005014505981 1 0.235205560922623 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156876640 chr1:156876638 nonsynonymous SNV 0.998 2 19 hm5C_associated_SNPs_28365 0 0 0 0 1 PEAR1 chr1:156876672 5'GT 156876672 Upstream 35bp
chr21 47706941 47706941 1 + G C LUAD 47706944 + 47706924 47706964 41 CAGAAATTTGACCTGGGGATCATCTGTGTTGACAACAAGAA CAGAAATTTGACCTGGGCATCATCTGTGTTGACAACAAGAA < 41bp 1 0.154305740165898 1 0.170276254415512 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control YBEY ENSG00000182362 CDS Human protein_coding chr21:47706944 chr21:47706941 synonymous SNV . 0 18 hm5C_associated_SNPs_28367 0 0 1 0 1 YBEY chr21:47707037 5'GT 47707037 Upstream 97bp
chr4 1730435 1730435 1 + G T LUAD 1730416 + 1730396 1730436 41 AAGTCTGGTTGCAGTGAGGCCCAGCCCCCAGAAAGCCCTGA AAGTCTGGTTGCAGTGAGGCCCAGCCCCCAGAAAGCCCTTA < 41bp 1 0.0978135724777768 1 0.251341700553894 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TACC3 ENSG00000013810 CDS Human protein_coding chr4:1730416 chr4:1730435 stopgain 0.003 0 40 hm5C_associated_SNPs_28368 0 0 1 0 1 TACC3 chr4:1730514 5'GT 1730514 Upstream 80bp
chr5 139820670 139820670 1 + G A LUAD 139820688 + 139820668 139820708 41 TAGATATTGTGAAATTATTACTTCTTCATGATGCTGATGTC TAAATATTGTGAAATTATTACTTCTTCATGATGCTGATGTC < 41bp 1 0.08715817624128 1 0.204266935586929 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139820688 chr5:139820670 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_28369 0 0 1 0 2 ANKHD1;ANKHD1-EIF4EBP3 chr5:139820580 3'AG 139820580 Downstream 91bp
chr5 139820670 139820670 1 + G A LUAD 139820688 + 139820668 139820708 41 TAGATATTGTGAAATTATTACTTCTTCATGATGCTGATGTC TAAATATTGTGAAATTATTACTTCTTCATGATGCTGATGTC < 41bp 1 0.08715817624128 1 0.204266935586929 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139820688 chr5:139820670 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_28369 0 0 1 0 2 ANKHD1;ANKHD1-EIF4EBP3 chr5:139820727 5'GT 139820727 Upstream 58bp
chr2 162242061 162242061 1 + C G LUAD 162242075 + 162242055 162242095 41 GGGTCACTTAAACAAGCCATCTATCCAGGTATTGCCTATAT GGGTCAGTTAAACAAGCCATCTATCCAGGTATTGCCTATAT < 41bp 1 0.102466097245538 1 0.153794348239899 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMD14 ENSG00000115233 CDS Human protein_coding chr2:162242075 chr2:162242061 nonsynonymous SNV 0.999 4 7 hm5C_associated_SNPs_28373 0 0 1 0 2 PSMD14 chr2:162241975 3'AG 162241975 Downstream 87bp
chr2 162242061 162242061 1 + C G LUAD 162242075 + 162242055 162242095 41 GGGTCACTTAAACAAGCCATCTATCCAGGTATTGCCTATAT GGGTCAGTTAAACAAGCCATCTATCCAGGTATTGCCTATAT < 41bp 1 0.102466097245538 1 0.153794348239899 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMD14 ENSG00000115233 CDS Human protein_coding chr2:162242075 chr2:162242061 nonsynonymous SNV 0.999 4 7 hm5C_associated_SNPs_28373 0 0 1 0 2 PSMD14 chr2:162242082 5'GT 162242082 Upstream 22bp
chr8 30332327 30332327 1 + G T LUAD 30332319 + 30332299 30332339 41 GGACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACCT GGACCCTATTTGTCAGTGGCCTTCCTCTTGATATCAAACCT < 41bp 1 0.0614846547943741 1 0.0538283288478851 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RBPMS ENSG00000157110 CDS Human protein_coding chr8:30332319 chr8:30332327 synonymous SNV . 0 29 hm5C_associated_SNPs_28374 0 0 1 0 2 RBPMS chr8:30332295 3'AG 30332295 Downstream 33bp
chr8 30332327 30332327 1 + G T LUAD 30332319 + 30332299 30332339 41 GGACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACCT GGACCCTATTTGTCAGTGGCCTTCCTCTTGATATCAAACCT < 41bp 1 0.0614846547943741 1 0.0538283288478851 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RBPMS ENSG00000157110 CDS Human protein_coding chr8:30332319 chr8:30332327 synonymous SNV . 0 29 hm5C_associated_SNPs_28374 0 0 1 0 2 RBPMS chr8:30332372 5'GT 30332372 Upstream 46bp
chr8 56866463 56866463 1 + A T LUAD 56866453 + 56866433 56866473 41 TTAGTCCCAAGCCACAGAAGCCATGGGATAAAGATGCCTGG TTAGTCCCAAGCCACAGAAGCCATGGGATATAGATGCCTGG < 41bp 1 0.0940224487267031 1 0.402371108531952 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56866453 chr8:56866463 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_28375 0 0 1 0 2 LYN chr8:56866391 3'AG 56866391 Downstream 73bp
chr8 56866463 56866463 1 + A T LUAD 56866453 + 56866433 56866473 41 TTAGTCCCAAGCCACAGAAGCCATGGGATAAAGATGCCTGG TTAGTCCCAAGCCACAGAAGCCATGGGATATAGATGCCTGG < 41bp 1 0.0940224487267031 1 0.402371108531952 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56866453 chr8:56866463 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_28375 0 0 1 0 2 LYN chr8:56866543 5'GT 56866543 Upstream 81bp
chr12 22208502 22208502 1 + G A LUAD 22208514 + 22208494 22208534 41 TCTCTGTTGTGAGACGCCATCAGTTTCGATGGAGTGAAATT TCTCTGTTATGAGACGCCATCAGTTTCGATGGAGTGAAATT < 41bp 1 0.303879355808166 1 0.106404840946198 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208514 chr12:22208502 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_28376 0 0 1 3 1 CMAS chr12:22208544 5'GT 22208544 Upstream 43bp
chr8 20073974 20073974 1 + A G LUAD 20073985 + 20073965 20074005 41 GAGGGGCAGATCTATGTGGACAGACAGCTGCACAACAGACA GAGGGGCAGGTCTATGTGGACAGACAGCTGCACAACAGACA < 41bp 1 0.313044659204718 1 0.267957597970963 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20073985 chr8:20073974 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_28378 0 0 1 0 2 ATP6V1B2 chr8:20073924 3'AG 20073924 Downstream 51bp
chr8 20073974 20073974 1 + A G LUAD 20073985 + 20073965 20074005 41 GAGGGGCAGATCTATGTGGACAGACAGCTGCACAACAGACA GAGGGGCAGGTCTATGTGGACAGACAGCTGCACAACAGACA < 41bp 1 0.313044659204718 1 0.267957597970963 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20073985 chr8:20073974 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_28378 0 0 1 0 2 ATP6V1B2 chr8:20074006 5'GT 20074006 Upstream 33bp
chr10 103292158 103292158 1 + T C LUAD 103292177 + 103292157 103292197 41 ATAGTAAGCGGCCTTCGAGACAACACAATCAAGGTGAGGTC ACAGTAAGCGGCCTTCGAGACAACACAATCAAGGTGAGGTC < 41bp 1 0.581520101326649 1 0.363532960414886 experiment 0.836959797346702 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BTRC ENSG00000166167 CDS Human protein_coding chr10:103292177 chr10:103292158 nonsynonymous SNV 0.919 4 2 hm5C_associated_SNPs_28379 0 0 0 0 1 BTRC chr10:103292189 5'GT 103292189 Upstream 32bp
chrX 107842032 107842032 1 + C T LUAD 107842027 + 107842007 107842047 41 CCTATGGGTCCCCCTGGTTTCGGCCCTCCAGGCCCAGTAGG CCTATGGGTCCCCCTGGTTTCGGCCTTCCAGGCCCAGTAGG < 41bp 1 0.544462127549442 1 0.619309067726135 experiment 0.911075744901115 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107842027 chrX:107842032 nonsynonymous SNV 0.998 2 26 hm5C_associated_SNPs_28381 0 0 0 0 1 COL4A5 chrX:107842100 5'GT 107842100 Upstream 69bp
chr7 129064734 129064734 1 + G C LUAD 129064717 + 129064697 129064737 41 TTCACCTTTGATCACTAGGGCCGCCTGCTGAACCTTAGCTG TTCACCTTTGATCACTAGGGCCGCCTGCTGAACCTTACCTG < 41bp 1 0.0799717912862509 1 0.169242352247238 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064717 chr7:129064734 nonsynonymous SNV 0.999 1 38 hm5C_associated_SNPs_28385 0 0 0 0 2 AHCYL2 chr7:129064715 3'AG 129064715 Downstream 20bp
chr7 129064734 129064734 1 + G C LUAD 129064717 + 129064697 129064737 41 TTCACCTTTGATCACTAGGGCCGCCTGCTGAACCTTAGCTG TTCACCTTTGATCACTAGGGCCGCCTGCTGAACCTTACCTG < 41bp 1 0.0799717912862509 1 0.169242352247238 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064717 chr7:129064734 nonsynonymous SNV 0.999 1 38 hm5C_associated_SNPs_28385 0 0 0 0 2 AHCYL2 chr7:129064783 5'GT 129064783 Upstream 50bp
chr17 66352936 66352936 1 + A T LUAD 66352925 + 66352905 66352945 41 AAGTATGCTGAGAAAGCAACCCAGTTCATCCAGCGTGCAAG AAGTATGCTGAGAAAGCAACCCAGTTCATCCTGCGTGCAAG < 41bp 1 0.308407485940755 1 0.297095417976379 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARSG ENSG00000141337 CDS Human protein_coding chr17:66352925 chr17:66352936 nonsynonymous SNV 0.777 1 32 hm5C_associated_SNPs_28387 0 0 1 0 1 ARSG chr17:66352945 5'GT 66352945 Upstream 10bp
chr3 193336694 193336694 1 + G A LUAD 193336676 + 193336656 193336696 41 AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATCGTG AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATCATG < 41bp 1 0.0453452188126769 1 0.0491491556167603 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336676 chr3:193336694 nonsynonymous SNV 0.999 0 39 hm5C_associated_SNPs_28388 0 0 1 0 2 OPA1 chr3:193336658 3'AG 193336658 Downstream 37bp
chr3 193336694 193336694 1 + G A LUAD 193336676 + 193336656 193336696 41 AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATCGTG AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATCATG < 41bp 1 0.0453452188126769 1 0.0491491556167603 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336676 chr3:193336694 nonsynonymous SNV 0.999 0 39 hm5C_associated_SNPs_28388 0 0 1 0 2 OPA1 chr3:193336725 5'GT 193336725 Upstream 32bp
chr4 106861750 106861750 1 + C G LUAD 106861769 + 106861749 106861789 41 GCAAATGTAAAGAAGGATACCAGGGTGATGGACTGACTTGT GGAAATGTAAAGAAGGATACCAGGGTGATGGACTGACTTGT < 41bp 1 0.768376489337033 1 0.788072288036346 experiment 0.463247021325934 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPNT ENSG00000168743 CDS Human protein_coding chr4:106861769 chr4:106861750 nonsynonymous SNV 0.905 5 2 hm5C_associated_SNPs_28391 0 0 1 0 2 NPNT chr4:106861671 3'AG 106861671 Downstream 80bp
chr4 106861750 106861750 1 + C G LUAD 106861769 + 106861749 106861789 41 GCAAATGTAAAGAAGGATACCAGGGTGATGGACTGACTTGT GGAAATGTAAAGAAGGATACCAGGGTGATGGACTGACTTGT < 41bp 1 0.768376489337033 1 0.788072288036346 experiment 0.463247021325934 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPNT ENSG00000168743 CDS Human protein_coding chr4:106861769 chr4:106861750 nonsynonymous SNV 0.905 5 2 hm5C_associated_SNPs_28391 0 0 1 0 2 NPNT chr4:106861793 5'GT 106861793 Upstream 44bp
chr5 64082385 64082385 1 + G A LUAD 64082382 + 64082362 64082402 41 TCCTTTTGATGACATCATTCCAAGGGAAATTAAAAGGCTGA TCCTTTTGATGACATCATTCCAAAGGAAATTAAAAGGCTGA < 41bp 1 0.229716601990323 1 0.657532632350922 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64082382 chr5:64082385 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_28393 0 0 1 0 2 CWC27 chr5:64082351 3'AG 64082351 Downstream 35bp
chr5 64082385 64082385 1 + G A LUAD 64082382 + 64082362 64082402 41 TCCTTTTGATGACATCATTCCAAGGGAAATTAAAAGGCTGA TCCTTTTGATGACATCATTCCAAAGGAAATTAAAAGGCTGA < 41bp 1 0.229716601990323 1 0.657532632350922 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64082382 chr5:64082385 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_28393 0 0 1 0 2 CWC27 chr5:64082454 5'GT 64082454 Upstream 70bp
chr6 12296272 12296272 1 + A T LUAD 12296292 + 12296272 12296312 41 ATGTGACCCACAACCGAGCACATTGGTGACAGACCTTCGGG TTGTGACCCACAACCGAGCACATTGGTGACAGACCTTCGGG < 41bp 1 0.536892801176396 1 0.11005374789238 experiment 0.926214397647209 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EDN1 ENSG00000078401 CDS Human protein_coding chr6:12296292 chr6:12296272 nonsynonymous SNV 0.000 2 1 hm5C_associated_SNPs_28394 0 0 0 0 1 EDN1 chr6:12296195 3'AG 12296195 Downstream 78bp
chrX 48759733 48759733 1 + G C LUAD 48759720 + 48759700 48759740 41 GGACCGCGGGTATGACAAGGCAGACCGGGAAGAGGGCAAAG GGACCGCGGGTATGACAAGGCAGACCGGGAAGACGGCAAAG < 41bp 1 0.63086530889816 1 0.208364635705948 experiment 0.73826938220368 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759720 chrX:48759733 nonsynonymous SNV 0.997 0 34 hm5C_associated_SNPs_28395 0 0 1 0 1 PQBP1 chrX:48759719 3'AG 48759719 Downstream 15bp
chr19 49100065 49100065 1 + T G LUAD 49100079 + 49100059 49100099 41 CTGGGCTCCGTCGTGGCACACTCAACCTTCAGCGCCATGAA CTGGGCGCCGTCGTGGCACACTCAACCTTCAGCGCCATGAA < 41bp 1 0.799781992354742 1 0.422555983066559 experiment 0.400436015290516 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49100079 chr19:49100065 nonsynonymous SNV 0.049 2 7 hm5C_associated_SNPs_28396 0 0 1 0 1 SULT2B1 chr19:49099996 3'AG 49099996 Downstream 70bp
chr4 79512740 79512740 1 + C G LUAD 79512760 + 79512740 79512780 41 CTGGTGACTTCCGGAAAGCTCTGTTGACTTTGGCAGATGTA GTGGTGACTTCCGGAAAGCTCTGTTGACTTTGGCAGATGTA < 41bp 1 0.28704836288542 1 0.170700818300247 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79512760 chr4:79512740 nonsynonymous SNV 0.995 4 1 hm5C_associated_SNPs_28397 0 0 0 0 2 ANXA3 chr4:79512698 3'AG 79512698 Downstream 43bp
chr4 79512740 79512740 1 + C G LUAD 79512760 + 79512740 79512780 41 CTGGTGACTTCCGGAAAGCTCTGTTGACTTTGGCAGATGTA GTGGTGACTTCCGGAAAGCTCTGTTGACTTTGGCAGATGTA < 41bp 1 0.28704836288542 1 0.170700818300247 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79512760 chr4:79512740 nonsynonymous SNV 0.995 4 1 hm5C_associated_SNPs_28397 0 0 0 0 2 ANXA3 chr4:79512777 5'GT 79512777 Upstream 38bp
chr20 42695418 42695418 1 + C G LUAD 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCCCCAGCAGCTCGGGATCCTGCTCAGCTGGCCCATCCAA < 41bp 1 0.439042618047212 1 0.138940393924713 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695418 nonsynonymous SNV 0.909 1 28 hm5C_associated_SNPs_28398 0 0 1 0 2 TOX2 chr20:42695370 3'AG 42695370 Downstream 49bp
chr20 42695418 42695418 1 + C G LUAD 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCCCCAGCAGCTCGGGATCCTGCTCAGCTGGCCCATCCAA < 41bp 1 0.439042618047212 1 0.138940393924713 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695418 nonsynonymous SNV 0.909 1 28 hm5C_associated_SNPs_28398 0 0 1 0 2 TOX2 chr20:42695497 5'GT 42695497 Upstream 80bp
chr11 118452185 118452185 1 + T A LUAD 118452203 + 118452183 118452223 41 ATTTTAGAAGATTTGGAGACCCTAAGGCTCTTCTCAAGAGT ATATTAGAAGATTTGGAGACCCTAAGGCTCTTCTCAAGAGT < 41bp 1 0.1704416007753 1 0.083447128534317 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARCN1 ENSG00000095139 CDS Human protein_coding chr11:118452203 chr11:118452185 synonymous SNV . 0 3 hm5C_associated_SNPs_28399 0 0 1 0 1 ARCN1 chr11:118452224 5'GT 118452224 Upstream 40bp
chr17 76061008 76061008 1 + G A LUAD 76061001 + 76060981 76061021 41 TGGCGCACCTGTTGCTGCCTCAGCCCTGTGCAAACCAGGTA TGGCGCACCTGTTGCTGCCTCAGCCCTATGCAAACCAGGTA < 41bp 1 0.198592404733911 1 0.666551828384399 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TNRC6C ENSG00000078687 CDS Human protein_coding chr17:76061001 chr17:76061008 synonymous SNV . 0 28 hm5C_associated_SNPs_28402 0 0 1 0 1 TNRC6C chr17:76061018 5'GT 76061018 Upstream 11bp
chr3 10320661 10320661 1 + C A LUAD 10320677 + 10320657 10320697 41 CCCTCACCTTGGCTGCCTTGCGTGAGAACACCAGTCGCCTC CCCTAACCTTGGCTGCCTTGCGTGAGAACACCAGTCGCCTC < 41bp 1 0.78210509621715 1 0.784127771854401 experiment 0.4357898075657 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TATDN2 ENSG00000157014 CDS Human protein_coding chr3:10320677 chr3:10320661 synonymous SNV . 0 5 hm5C_associated_SNPs_28403 0 0 1 0 3 TATDN2 chr3:10320569 3'AG 10320569 Downstream 93bp
chr3 10320661 10320661 1 + C A LUAD 10320677 + 10320657 10320697 41 CCCTCACCTTGGCTGCCTTGCGTGAGAACACCAGTCGCCTC CCCTAACCTTGGCTGCCTTGCGTGAGAACACCAGTCGCCTC < 41bp 1 0.78210509621715 1 0.784127771854401 experiment 0.4357898075657 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TATDN2 ENSG00000157014 CDS Human other chr3:10320677 chr3:10320661 synonymous SNV . 0 5 hm5C_associated_SNPs_28403 0 0 1 0 3 TATDN2 chr3:10320718 5'GT 10320718 Upstream 58bp
chr3 10320661 10320661 1 + C A LUAD 10320677 + 10320657 10320697 41 CCCTCACCTTGGCTGCCTTGCGTGAGAACACCAGTCGCCTC CCCTAACCTTGGCTGCCTTGCGTGAGAACACCAGTCGCCTC < 41bp 1 0.78210509621715 1 0.784127771854401 experiment 0.4357898075657 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TATDN2 ENSG00000157014 CDS Human protein_coding chr3:10320677 chr3:10320661 synonymous SNV . 0 5 hm5C_associated_SNPs_28403 0 0 1 0 3 TATDN2 chr3:10320747 5'GT 10320747 Upstream 87bp
chr6 44219921 44219921 1 + A G LUAD 44219903 + 44219883 44219923 41 CCAAGGAGGGTCTGGAGCTGCCTGAGGATGAGGAGGAGAAG CCAAGGAGGGTCTGGAGCTGCCTGAGGATGAGGAGGAGGAG < 41bp 1 0.475719949054164 1 0.178374111652374 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219903 chr6:44219921 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_28404 0 0 1 0 1 HSP90AB1 chr6:44220004 5'GT 44220004 Upstream 84bp
chr6 44219921 44219921 1 + A G LUAD 44219904 + 44219884 44219924 41 CAAGGAGGGTCTGGAGCTGCCTGAGGATGAGGAGGAGAAGA CAAGGAGGGTCTGGAGCTGCCTGAGGATGAGGAGGAGGAGA < 41bp 1 0.765465004319654 1 0.374061822891235 experiment 0.469069991360692 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219904 chr6:44219921 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_28405 0 0 1 0 1 HSP90AB1 chr6:44220004 5'GT 44220004 Upstream 84bp
chr22 42276797 42276797 1 + G T LUAD 42276812 + 42276792 42276832 41 CGCCTGGACCTGGCCTGCAGCCTCTCCTGGAACGTGATCCG CGCCTTGACCTGGCCTGCAGCCTCTCCTGGAACGTGATCCG < 41bp 1 0.0604861968764007 1 0.04303377866745 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42276812 chr22:42276797 stopgain 1.000 0 6 hm5C_associated_SNPs_28407 0 0 1 0 1 SREBF2 chr22:42276720 3'AG 42276720 Downstream 78bp
chr1 109806903 109806903 1 + T A LUAD 109806891 + 109806871 109806911 41 AGAGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCA AGAGCAGAGGGCAACCTGGGCCCCCGGCTGCAAGGTCTGCA < 41bp 1 0.0340295780120406 1 0.0523159801959991 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806891 chr1:109806903 nonsynonymous SNV 0.797 0 33 hm5C_associated_SNPs_28408 0 0 1 0 1 CELSR2 chr1:109806987 5'GT 109806987 Upstream 85bp
chr1 109806903 109806903 1 + T A LUAD 109806892 + 109806872 109806912 41 GAGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCAC GAGCAGAGGGCAACCTGGGCCCCCGGCTGCAAGGTCTGCAC < 41bp 1 0.163187299042717 1 0.410556823015213 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806892 chr1:109806903 nonsynonymous SNV 0.797 0 32 hm5C_associated_SNPs_28409 0 0 1 0 1 CELSR2 chr1:109806987 5'GT 109806987 Upstream 85bp
chr1 109806903 109806903 1 + T A LUAD 109806893 + 109806873 109806913 41 AGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCACC AGCAGAGGGCAACCTGGGCCCCCGGCTGCAAGGTCTGCACC < 41bp 1 0.301163214254921 1 0.230568557977676 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806893 chr1:109806903 nonsynonymous SNV 0.797 0 31 hm5C_associated_SNPs_28410 0 0 1 0 1 CELSR2 chr1:109806987 5'GT 109806987 Upstream 85bp
chr1 109806903 109806903 1 + T A LUAD 109806894 + 109806874 109806914 41 GCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCACCT GCAGAGGGCAACCTGGGCCCCCGGCTGCAAGGTCTGCACCT < 41bp 1 0.165917589915121 1 0.459966540336609 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806894 chr1:109806903 nonsynonymous SNV 0.797 0 30 hm5C_associated_SNPs_28411 0 0 1 0 1 CELSR2 chr1:109806987 5'GT 109806987 Upstream 85bp
chr1 109806903 109806903 1 + T A LUAD 109806895 + 109806875 109806915 41 CAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCACCTG CAGAGGGCAACCTGGGCCCCCGGCTGCAAGGTCTGCACCTG < 41bp 1 0.29030569500004 1 0.6855708360672 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806895 chr1:109806903 nonsynonymous SNV 0.797 0 29 hm5C_associated_SNPs_28412 0 0 1 0 1 CELSR2 chr1:109806987 5'GT 109806987 Upstream 85bp
chr12 121001395 121001395 1 + C A LUAD 121001403 + 121001383 121001423 41 CTTCACACGCCTCAGCAGCTCTCCTTGTTACTACTTTTACC CTTCACACGCCTAAGCAGCTCTCCTTGTTACTACTTTTACC < 41bp 1 0.38765215011485 1 0.167015761137009 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF10 ENSG00000022840 CDS Human protein_coding chr12:121001403 chr12:121001395 synonymous SNV . 0 13 hm5C_associated_SNPs_28413 0 0 1 0 1 RNF10 chr12:121001426 5'GT 121001426 Upstream 32bp
chr12 121001395 121001395 1 + C A LUAD 121001406 + 121001386 121001426 41 CACACGCCTCAGCAGCTCTCCTTGTTACTACTTTTACCAAG CACACGCCTAAGCAGCTCTCCTTGTTACTACTTTTACCAAG < 41bp 1 0.256187956576046 1 0.0650007128715515 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF10 ENSG00000022840 CDS Human protein_coding chr12:121001406 chr12:121001395 synonymous SNV . 0 10 hm5C_associated_SNPs_28414 0 0 1 0 1 RNF10 chr12:121001426 5'GT 121001426 Upstream 32bp
chr2 220412305 220412305 1 + C T LUAD 220412324 + 220412304 220412344 41 CCGAGAGCGGGTGCTAGAGACACAGCTGAGTGCTGGGGCGA CTGAGAGCGGGTGCTAGAGACACAGCTGAGTGCTGGGGCGA < 41bp 1 0.678269757447883 1 0.180775165557861 experiment 0.643460485104234 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM198 ENSG00000188760 CDS Human protein_coding chr2:220412324 chr2:220412305 stopgain 1.000 1 2 hm5C_associated_SNPs_28419 0 0 1 0 1 TMEM198 chr2:220412228 3'AG 220412228 Downstream 78bp
chr5 86670002 86670002 1 + T A LUAD 86670013 + 86669993 86670033 41 TTTTACATATTGAAGAAGCCCATAAACTCCCAGTAAAACAT TTTTACATAATGAAGAAGCCCATAAACTCCCAGTAAAACAT < 41bp 1 0.181962216281602 1 0.201029449701309 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RASA1 ENSG00000145715 CDS Human protein_coding chr5:86670013 chr5:86670002 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_28420 0 0 0 2 1 RASA1 chr5:86669980 3'AG 86669980 Downstream 23bp
chr6 74475671 74475671 1 + G C LUAD 74475665 + 74475645 74475685 41 ACCATTAGGTGAAGGTAACTCGTGCTGATGGCAACCAACTG ACCATTAGGTGAAGGTAACTCGTGCTCATGGCAACCAACTG < 41bp 1 0.260572623879526 1 0.450431257486343 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD109 ENSG00000156535 CDS Human protein_coding chr6:74475665 chr6:74475671 nonsynonymous SNV 0.984 4 27 hm5C_associated_SNPs_28421 0 0 0 0 1 CD109 chr6:74475653 3'AG 74475653 Downstream 19bp
chr1 109806904 109806904 1 + G T LUAD 109806891 + 109806871 109806911 41 AGAGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCA AGAGCAGAGGGCAACCTGGGCCCCCGGCTGCATTGTCTGCA < 41bp 1 0.0394575637519915 1 0.0518304705619812 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806891 chr1:109806904 nonsynonymous SNV 0.799 3 34 hm5C_associated_SNPs_28422 0 0 1 0 1 CELSR2 chr1:109806987 5'GT 109806987 Upstream 84bp
chr1 109806904 109806904 1 + G T LUAD 109806892 + 109806872 109806912 41 GAGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCAC GAGCAGAGGGCAACCTGGGCCCCCGGCTGCATTGTCTGCAC < 41bp 1 0.200112423087898 1 0.59497994184494 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806892 chr1:109806904 nonsynonymous SNV 0.799 3 33 hm5C_associated_SNPs_28423 0 0 1 0 1 CELSR2 chr1:109806987 5'GT 109806987 Upstream 84bp
chr1 109806904 109806904 1 + G T LUAD 109806893 + 109806873 109806913 41 AGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCACC AGCAGAGGGCAACCTGGGCCCCCGGCTGCATTGTCTGCACC < 41bp 1 0.266463544291736 1 0.283645838499069 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806893 chr1:109806904 nonsynonymous SNV 0.799 3 32 hm5C_associated_SNPs_28424 0 0 1 0 1 CELSR2 chr1:109806987 5'GT 109806987 Upstream 84bp
chr1 109806904 109806904 1 + G T LUAD 109806894 + 109806874 109806914 41 GCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCACCT GCAGAGGGCAACCTGGGCCCCCGGCTGCATTGTCTGCACCT < 41bp 1 0.132848455046493 1 0.362790733575821 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806894 chr1:109806904 nonsynonymous SNV 0.799 3 31 hm5C_associated_SNPs_28425 0 0 1 0 1 CELSR2 chr1:109806987 5'GT 109806987 Upstream 84bp
chr1 109806904 109806904 1 + G T LUAD 109806895 + 109806875 109806915 41 CAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCACCTG CAGAGGGCAACCTGGGCCCCCGGCTGCATTGTCTGCACCTG < 41bp 1 0.262404886238937 1 0.512665212154388 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806895 chr1:109806904 nonsynonymous SNV 0.799 3 30 hm5C_associated_SNPs_28426 0 0 1 0 1 CELSR2 chr1:109806987 5'GT 109806987 Upstream 84bp
chr3 126751397 126751397 1 + T A LUAD 126751389 + 126751369 126751409 41 CTGGGCAAGGACTCACCCTCCAACAAGCTGCTCTACGCCAA CTGGGCAAGGACTCACCCTCCAACAAGCAGCTCTACGCCAA < 41bp 1 0.476567223440151 1 0.582168161869049 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126751389 chr3:126751397 nonsynonymous SNV 0.985 4 29 hm5C_associated_SNPs_28427 0 0 1 0 1 PLXNA1 chr3:126751442 5'GT 126751442 Upstream 46bp
chr3 125694456 125694456 1 + C A LUAD 125694437 + 125694417 125694457 41 CCCTGTCCCGTGGAGAGACGCCTCCGGTGAGAGAGCGGTCT CCCTGTCCCGTGGAGAGACGCCTCCGGTGAGAGAGCGGTAT < 41bp 1 0.139906189168273 1 0.0902200043201447 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ROPN1B ENSG00000114547 CDS Human protein_coding chr3:125694437 chr3:125694456 nonsynonymous SNV 0.062 1 40 hm5C_associated_SNPs_28428 0 0 0 0 1 ROPN1B chr3:125694523 5'GT 125694523 Upstream 68bp
chr5 147819233 147819233 1 + G A LUAD 147819249 + 147819229 147819269 41 AGCAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGT AGCAAAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGT < 41bp 1 0.212952714847544 1 0.0729688405990601 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819249 chr5:147819233 synonymous SNV . 0 5 hm5C_associated_SNPs_28430 0 0 1 0 1 FBXO38 chr5:147819210 3'AG 147819210 Downstream 24bp
chr5 147819233 147819233 1 + G A LUAD 147819251 + 147819231 147819271 41 CAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGTAT CAAAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGTAT < 41bp 1 0.13640398859458 1 0.0367110669612885 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819251 chr5:147819233 synonymous SNV . 0 3 hm5C_associated_SNPs_28431 0 0 1 0 1 FBXO38 chr5:147819210 3'AG 147819210 Downstream 24bp
chr11 43411214 43411214 1 + G T LUAD 43411217 + 43411197 43411237 41 AACAGAAACAATTAGTTGCTCAAAAAATTCACATAGAAGAG AACAGAAACAATTAGTTTCTCAAAAAATTCACATAGAAGAG < 41bp 1 0.542908305024111 1 0.472005844116211 experiment 0.914183389951778 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTC17 ENSG00000052841 CDS Human protein_coding chr11:43411217 chr11:43411214 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_28432 0 0 1 0 1 TTC17 chr11:43411202 3'AG 43411202 Downstream 13bp
chr11 125482978 125482978 1 + C G LUAD 125482974 + 125482954 125482994 41 CCAGTGAGGCCTACTCTTCTCCGTCCATTGTACTATCTGCC CCAGTGAGGCCTACTCTTCTCCGTGCATTGTACTATCTGCC < 41bp 1 0.239564499238156 1 0.636975646018982 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STT3A ENSG00000134910 CDS Human protein_coding chr11:125482974 chr11:125482978 nonsynonymous SNV 0.953 4 25 hm5C_associated_SNPs_28433 0 0 1 0 2 STT3A chr11:125482884 3'AG 125482884 Downstream 95bp
chr11 125482978 125482978 1 + C G LUAD 125482974 + 125482954 125482994 41 CCAGTGAGGCCTACTCTTCTCCGTCCATTGTACTATCTGCC CCAGTGAGGCCTACTCTTCTCCGTGCATTGTACTATCTGCC < 41bp 1 0.239564499238156 1 0.636975646018982 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STT3A ENSG00000134910 CDS Human protein_coding chr11:125482974 chr11:125482978 nonsynonymous SNV 0.953 4 25 hm5C_associated_SNPs_28433 0 0 1 0 2 STT3A chr11:125483072 5'GT 125483072 Upstream 95bp
chr4 146576326 146576326 1 + G T LUAD 146576316 + 146576296 146576336 41 TAGGTAATTCGTATTTCTGCCCGAAGTGGAGAGGGGATCTC TAGGTAATTCGTATTTCTGCCCGAAGTGGATAGGGGATCTC < 41bp 1 0.525843314390092 1 0.0773030519485474 experiment 0.948313371219817 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MMAA ENSG00000151611 CDS Human protein_coding chr4:146576316 chr4:146576326 stopgain 1.000 1 31 hm5C_associated_SNPs_28434 0 0 1 0 1 MMAA chr4:146576299 3'AG 146576299 Downstream 28bp
chr1 158063219 158063219 1 + A T LUAD 158063221 + 158063201 158063241 41 CCTTGGTATTCTTCCTCTACCGGCGCCGCAAAGGCAGTGAG CCTTGGTATTCTTCCTCTTCCGGCGCCGCAAAGGCAGTGAG < 41bp 1 0.62724320996773 1 0.738637864589691 experiment 0.74551358006454 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063221 chr1:158063219 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_28435 0 0 1 0 2 KIRREL chr1:158063129 3'AG 158063129 Downstream 91bp
chr1 158063219 158063219 1 + A T LUAD 158063221 + 158063201 158063241 41 CCTTGGTATTCTTCCTCTACCGGCGCCGCAAAGGCAGTGAG CCTTGGTATTCTTCCTCTTCCGGCGCCGCAAAGGCAGTGAG < 41bp 1 0.62724320996773 1 0.738637864589691 experiment 0.74551358006454 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063221 chr1:158063219 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_28435 0 0 1 0 2 KIRREL chr1:158063236 5'GT 158063236 Upstream 18bp
chr18 34349242 34349242 1 + T A LUAD 34349255 + 34349235 34349275 41 TAGTTCCTGGACTATGGGAACTGATGACTCGCCCAATGTCA TAGTTCCAGGACTATGGGAACTGATGACTCGCCCAATGTCA < 41bp 1 0.137005685998653 1 0.0937724709510803 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34349255 chr18:34349242 nonsynonymous SNV 0.999 3 8 hm5C_associated_SNPs_28436 0 0 1 0 1 FHOD3 chr18:34349228 3'AG 34349228 Downstream 15bp
chr3 49060156 49060156 1 + A G LUAD 49060174 + 49060154 49060194 41 TCACCGAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC TCGCCGAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC < 41bp 1 0.381896278736435 1 0.15136581659317 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060174 chr3:49060156 nonsynonymous SNV 0.948 3 3 hm5C_associated_SNPs_28437 0 0 1 0 2 NDUFAF3 chr3:49060135 3'AG 49060135 Downstream 22bp
chr3 49060156 49060156 1 + A G LUAD 49060174 + 49060154 49060194 41 TCACCGAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC TCGCCGAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC < 41bp 1 0.381896278736435 1 0.15136581659317 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060174 chr3:49060156 nonsynonymous SNV 0.948 3 3 hm5C_associated_SNPs_28437 0 0 1 0 2 NDUFAF3 chr3:49060201 5'GT 49060201 Upstream 46bp
chr10 75542186 75542186 1 + C T LUAD 75542205 + 75542185 75542225 41 GCCGCGAGGGCTCAGGTGACCGATGGCTCCTGGGGTGCTTT GTCGCGAGGGCTCAGGTGACCGATGGCTCCTGGGGTGCTTT < 41bp 1 0.746630140304924 1 0.83469021320343 experiment 0.506739719390152 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CHCHD1 ENSG00000172586 CDS Human protein_coding chr10:75542205 chr10:75542186 nonsynonymous SNV 0.881 0 2 hm5C_associated_SNPs_28439 0 0 1 0 1 CHCHD1 chr10:75542199 5'GT 75542199 Upstream 14bp
chr11 120827558 120827558 1 + G T LUAD 120827547 + 120827527 120827567 41 CCCAGGGCCGGTGCAACCTCCTGGTGAACCAGTACTCCCTG CCCAGGGCCGGTGCAACCTCCTGGTGAACCATTACTCCCTG < 41bp 1 0.730809168761001 1 0.875070691108704 experiment 0.538381662477997 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120827547 chr11:120827558 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_28440 0 0 0 0 1 GRIK4 chr11:120827489 3'AG 120827489 Downstream 70bp
chr17 30774031 30774031 1 + G A LUAD 30774035 + 30774015 30774055 41 GAGCATCCTGGAACTGGGATCTCTCCTGGCAAAGACTGGAC GAGCATCCTGGAACTGAGATCTCTCCTGGCAAAGACTGGAC < 41bp 1 0.260276487904819 1 0.337418258190155 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30774035 chr17:30774031 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_28441 0 0 1 0 2 PSMD11 chr17:30773963 3'AG 30773963 Downstream 69bp
chr17 30774031 30774031 1 + G A LUAD 30774035 + 30774015 30774055 41 GAGCATCCTGGAACTGGGATCTCTCCTGGCAAAGACTGGAC GAGCATCCTGGAACTGAGATCTCTCCTGGCAAAGACTGGAC < 41bp 1 0.260276487904819 1 0.337418258190155 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30774035 chr17:30774031 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_28441 0 0 1 0 2 PSMD11 chr17:30774064 5'GT 30774064 Upstream 34bp
chr19 49993753 49993753 1 + G T LUAD 49993749 + 49993729 49993769 41 TAGTGAAGTACCTGGCTTTCCTCCGCAAGCGGATGAACACC TAGTGAAGTACCTGGCTTTCCTCCTCAAGCGGATGAACACC < 41bp 1 0.637832201190245 1 0.28656804561615 experiment 0.724335597619509 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993749 chr19:49993753 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_28442 0 0 1 0 2 RPL13A chr19:49993732 3'AG 49993732 Downstream 22bp
chr19 49993753 49993753 1 + G T LUAD 49993749 + 49993729 49993769 41 TAGTGAAGTACCTGGCTTTCCTCCGCAAGCGGATGAACACC TAGTGAAGTACCTGGCTTTCCTCCTCAAGCGGATGAACACC < 41bp 1 0.637832201190245 1 0.28656804561615 experiment 0.724335597619509 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993749 chr19:49993753 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_28442 0 0 1 0 2 RPL13A chr19:49993833 5'GT 49993833 Upstream 81bp
chr19 41135376 41135376 1 + C G LUAD 41135396 + 41135376 41135416 41 CCTTCCGCTGCATCTGCCGCCCGGGATTCGCACCCACGCAC GCTTCCGCTGCATCTGCCGCCCGGGATTCGCACCCACGCAC < 41bp 1 0.607813042162557 1 0.890989303588867 experiment 0.784373915674886 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41135396 chr19:41135376 nonsynonymous SNV 0.999 2 1 hm5C_associated_SNPs_28443 0 0 1 0 1 LTBP4 chr19:41135301 3'AG 41135301 Downstream 76bp
chr11 65055292 65055292 1 + G T LUAD 65055284 + 65055264 65055304 41 GACCTGATTGCTGTCATCAACCATGACCGGCCAGATGTCTG GACCTGATTGCTGTCATCAACCATGACCTGCCAGATGTCTG < 41bp 1 0.105409568711961 1 0.218507438898087 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control POLA2 ENSG00000014138 CDS Human protein_coding chr11:65055284 chr11:65055292 nonsynonymous SNV 0.981 2 29 hm5C_associated_SNPs_28444 0 0 1 0 1 POLA2 chr11:65055311 5'GT 65055311 Upstream 20bp
chr1 153617542 153617542 1 + C T LUAD 153617536 + 153617516 153617556 41 TTTTTTTTTTCCCCTTTGGGCCAGGTCGGGGTATGATAGGT TTTTTTTTTTCCCCTTTGGGCCAGGTTGGGGTATGATAGGT < 41bp 1 0.16942993627309 1 0.458980143070221 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHTOP ENSG00000160679 CDS Human protein_coding chr1:153617536 chr1:153617542 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_28446 0 0 1 0 1 CHTOP chr1:153617540 3'AG 153617540 Downstream 3bp
chr1 153617542 153617542 1 + C T LUAD 153617537 + 153617517 153617557 41 TTTTTTTTTCCCCTTTGGGCCAGGTCGGGGTATGATAGGTC TTTTTTTTTCCCCTTTGGGCCAGGTTGGGGTATGATAGGTC < 41bp 1 0.203520223537798 1 0.455877214670181 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CHTOP ENSG00000160679 CDS Human protein_coding chr1:153617537 chr1:153617542 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_28447 0 0 1 0 1 CHTOP chr1:153617540 3'AG 153617540 Downstream 3bp
chr6 25450173 25450173 1 + G T LUAD 25450192 + 25450172 25450212 41 AGTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAGCA ATTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAGCA < 41bp 1 0.439094722857312 1 0.507946133613586 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25450192 chr6:25450173 nonsynonymous SNV 0.998 0 2 hm5C_associated_SNPs_28448 0 0 0 0 2 CARMIL1 chr6:25450126 3'AG 25450126 Downstream 48bp
chr6 25450173 25450173 1 + G T LUAD 25450192 + 25450172 25450212 41 AGTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAGCA ATTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAGCA < 41bp 1 0.439094722857312 1 0.507946133613586 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25450192 chr6:25450173 nonsynonymous SNV 0.998 0 2 hm5C_associated_SNPs_28448 0 0 0 0 2 CARMIL1 chr6:25450223 5'GT 25450223 Upstream 51bp
chr3 170009707 170009707 1 + A T LUAD 170009695 + 170009675 170009715 41 TTCTGTGGTACTCCTAATTACATTGCTCCTGAAATTTTAAG TTCTGTGGTACTCCTAATTACATTGCTCCTGATATTTTAAG < 41bp 1 0.109863273254084 1 0.0430306792259216 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:170009695 chr3:170009707 nonsynonymous SNV 0.999 4 33 hm5C_associated_SNPs_28450 0 0 0 0 2 PRKCI chr3:170009642 3'AG 170009642 Downstream 66bp
chr3 170009707 170009707 1 + A T LUAD 170009695 + 170009675 170009715 41 TTCTGTGGTACTCCTAATTACATTGCTCCTGAAATTTTAAG TTCTGTGGTACTCCTAATTACATTGCTCCTGATATTTTAAG < 41bp 1 0.109863273254084 1 0.0430306792259216 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:170009695 chr3:170009707 nonsynonymous SNV 0.999 4 33 hm5C_associated_SNPs_28450 0 0 0 0 2 PRKCI chr3:170009729 5'GT 170009729 Upstream 23bp
chr5 148743716 148743716 1 + G A LUAD 148743717 + 148743697 148743737 41 CGCCTCTGGTGGCACTATGGCATCAGCTTCCTGAGGCTGCA CGCCTCTGGTGGCACTATGACATCAGCTTCCTGAGGCTGCA < 41bp 1 0.54586203457499 1 0.205280154943466 experiment 0.90827593085002 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCYOX1L ENSG00000145882 CDS Human protein_coding chr5:148743717 chr5:148743716 nonsynonymous SNV 0.995 4 20 hm5C_associated_SNPs_28451 0 0 1 0 1 PCYOX1L chr5:148743773 5'GT 148743773 Upstream 58bp
chr10 102822830 102822830 1 + A T LUAD 102822848 + 102822828 102822868 41 TCACTGTGGCACACCCGGGGCCCTGCGAATCGGGTACGCAT TCTCTGTGGCACACCCGGGGCCCTGCGAATCGGGTACGCAT < 41bp 1 0.0943106895433713 1 0.0724351108074188 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102822848 chr10:102822830 nonsynonymous SNV 0.998 0 3 hm5C_associated_SNPs_28458 0 0 0 0 1 KAZALD1 chr10:102822860 5'GT 102822860 Upstream 31bp
chr10 102822830 102822830 1 + A T LUAD 102822849 + 102822829 102822869 41 CACTGTGGCACACCCGGGGCCCTGCGAATCGGGTACGCATG CTCTGTGGCACACCCGGGGCCCTGCGAATCGGGTACGCATG < 41bp 1 0.0790889312603277 1 0.136078357696533 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102822849 chr10:102822830 nonsynonymous SNV 0.998 0 2 hm5C_associated_SNPs_28459 0 0 0 0 1 KAZALD1 chr10:102822860 5'GT 102822860 Upstream 31bp
chr10 102822830 102822830 1 + A T LUAD 102822850 + 102822830 102822870 41 ACTGTGGCACACCCGGGGCCCTGCGAATCGGGTACGCATGG TCTGTGGCACACCCGGGGCCCTGCGAATCGGGTACGCATGG < 41bp 1 0.568558975970423 1 0.135788172483444 experiment 0.862882048059153 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102822850 chr10:102822830 nonsynonymous SNV 0.998 0 1 hm5C_associated_SNPs_28460 0 0 0 0 1 KAZALD1 chr10:102822860 5'GT 102822860 Upstream 31bp
chr17 39978051 39978051 1 + C A LUAD 39978062 + 39978042 39978082 41 CAAGGATGGCGAGGTCCCTCCGGAGGAGGTGGGTGAAGGTT CAAGGATGGAGAGGTCCCTCCGGAGGAGGTGGGTGAAGGTT < 41bp 1 0.550169301807234 1 0.787547945976257 experiment 0.899661396385532 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39978062 chr17:39978051 synonymous SNV . 0 10 hm5C_associated_SNPs_28463 0 0 1 0 1 FKBP10 chr17:39978069 5'GT 39978069 Upstream 19bp
chr5 167943881 167943881 1 + C G LUAD 167943878 + 167943858 167943898 41 CATAACCGGTTGAATGACTACATCTTCTCCTTTGACAAAAT CATAACCGGTTGAATGACTACATGTTCTCCTTTGACAAAAT < 41bp 1 0.298229836589709 1 0.063340961933136 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RARS ENSG00000113643 CDS Human protein_coding chr5:167943878 chr5:167943881 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_28464 0 0 1 0 2 RARS chr5:167943783 3'AG 167943783 Downstream 99bp
chr5 167943881 167943881 1 + C G LUAD 167943878 + 167943858 167943898 41 CATAACCGGTTGAATGACTACATCTTCTCCTTTGACAAAAT CATAACCGGTTGAATGACTACATGTTCTCCTTTGACAAAAT < 41bp 1 0.298229836589709 1 0.063340961933136 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RARS ENSG00000113643 CDS Human protein_coding chr5:167943878 chr5:167943881 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_28464 0 0 1 0 2 RARS chr5:167943955 5'GT 167943955 Upstream 75bp
chr4 57891066 57891066 1 + G T LUAD 57891056 + 57891036 57891076 41 CTTTTTTTTTTAAAAGGTATCGGCTAACAAGGGTGAAATTG CTTTTTTTTTTAAAAGGTATCGGCTAACAATGGTGAAATTG < 41bp 1 0.362175025144119 1 0.418382048606873 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57891056 chr4:57891066 nonsynonymous SNV 0.998 0 31 hm5C_associated_SNPs_28466 0 0 1 0 2 POLR2B chr4:57891052 3'AG 57891052 Downstream 15bp
chr4 57891066 57891066 1 + G T LUAD 57891056 + 57891036 57891076 41 CTTTTTTTTTTAAAAGGTATCGGCTAACAAGGGTGAAATTG CTTTTTTTTTTAAAAGGTATCGGCTAACAATGGTGAAATTG < 41bp 1 0.362175025144119 1 0.418382048606873 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57891056 chr4:57891066 nonsynonymous SNV 0.998 0 31 hm5C_associated_SNPs_28466 0 0 1 0 2 POLR2B chr4:57891165 5'GT 57891165 Upstream 100bp
chr22 38046636 38046636 1 + C T LUAD 38046649 + 38046629 38046669 41 CTTCCGTCCACTGCCGTGCCCACCCCAGCCACCACCCCGGC CTTCCGTTCACTGCCGTGCCCACCCCAGCCACCACCCCGGC < 41bp 1 0.33079988068799 1 0.0234816670417786 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38046649 chr22:38046636 nonsynonymous SNV 0.001 0 8 hm5C_associated_SNPs_28467 0 0 1 5 1 SH3BP1 chr22:38046549 3'AG 38046549 Downstream 88bp
chrX 54838629 54838629 1 + C A LUAD 54838641 + 54838621 54838661 41 AGAATGACCACTTGTACATTCTTCTCAGCACCTTAGAGCCC AGAATGACAACTTGTACATTCTTCTCAGCACCTTAGAGCCC < 41bp 1 0.124250139790139 1 0.0473296940326691 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54838641 chrX:54838629 nonsynonymous SNV 0.905 0 9 hm5C_associated_SNPs_28472 0 0 1 0 2 MAGED2 chrX:54838590 3'AG 54838590 Downstream 40bp
chrX 54838629 54838629 1 + C A LUAD 54838641 + 54838621 54838661 41 AGAATGACCACTTGTACATTCTTCTCAGCACCTTAGAGCCC AGAATGACAACTTGTACATTCTTCTCAGCACCTTAGAGCCC < 41bp 1 0.124250139790139 1 0.0473296940326691 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54838641 chrX:54838629 nonsynonymous SNV 0.905 0 9 hm5C_associated_SNPs_28472 0 0 1 0 2 MAGED2 chrX:54838684 5'GT 54838684 Upstream 56bp
chr18 8819054 8819054 1 + C T LUAD 8819061 + 8819041 8819081 41 CCAGGGAAGCCTCCGCATGCCCCGTCCAGTGGCCATGTGGC CCAGGGAAGCCTCTGCATGCCCCGTCCAGTGGCCATGTGGC < 41bp 1 0.17362122048639 1 0.0981238782405853 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8819061 chr18:8819054 nonsynonymous SNV 0.002 2 14 hm5C_associated_SNPs_28473 0 0 0 0 2 MTCL1 chr18:8818961 3'AG 8818961 Downstream 94bp
chr18 8819054 8819054 1 + C T LUAD 8819061 + 8819041 8819081 41 CCAGGGAAGCCTCCGCATGCCCCGTCCAGTGGCCATGTGGC CCAGGGAAGCCTCTGCATGCCCCGTCCAGTGGCCATGTGGC < 41bp 1 0.17362122048639 1 0.0981238782405853 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8819061 chr18:8819054 nonsynonymous SNV 0.002 2 14 hm5C_associated_SNPs_28473 0 0 0 0 2 MTCL1 chr18:8819045 3'AG 8819045 Downstream 10bp
chr5 149206254 149206254 1 + G T LUAD 149206241 + 149206221 149206261 41 CCCTCCTCACTCCAGATTGACAGTGAGAATGAGGCCCTCCT CCCTCCTCACTCCAGATTGACAGTGAGAATGAGTCCCTCCT < 41bp 1 0.250907135809206 1 0.130060762166977 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPARGC1B ENSG00000155846 CDS Human protein_coding chr5:149206241 chr5:149206254 nonsynonymous SNV 0.998 4 34 hm5C_associated_SNPs_28474 0 0 1 0 1 PPARGC1B chr5:149206236 3'AG 149206236 Downstream 19bp
chr6 42561937 42561937 1 + A T LUAD 42561936 + 42561916 42561956 41 ATTTTTTTCCAAGATGACAACATCAGGAGGTGGAGGTTTCT ATTTTTTTCCAAGATGACAACTTCAGGAGGTGGAGGTTTCT < 41bp 1 0.167420558811297 1 0.593618035316467 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBR2 ENSG00000024048 CDS Human protein_coding chr6:42561936 chr6:42561937 synonymous SNV . 0 22 hm5C_associated_SNPs_28477 0 0 1 0 1 UBR2 chr6:42561929 3'AG 42561929 Downstream 9bp
chr5 154179525 154179525 1 + G C LUAD 154179534 + 154179514 154179554 41 AGGGCCTGTCTGCCAGCCTGCCTGACCTGGATTCTGAGAAC AGGGCCTGTCTCCCAGCCTGCCTGACCTGGATTCTGAGAAC < 41bp 1 0.223487172651887 1 0.046910434961319 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154179534 chr5:154179525 nonsynonymous SNV 0.998 2 12 hm5C_associated_SNPs_28478 0 0 1 0 1 LARP1 chr5:154179602 5'GT 154179602 Upstream 78bp
chr3 170110112 170110112 1 + C G LUAD 170110100 + 170110080 170110120 41 GAGGCCGATAGGCAAGAACTCCAAGATGAACTCAGACAGGA GAGGCCGATAGGCAAGAACTCCAAGATGAACTGAGACAGGA < 41bp 1 0.459722361207837 1 0.422502368688583 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIL ENSG00000136603 CDS Human protein_coding chr3:170110100 chr3:170110112 synonymous SNV . 0 33 hm5C_associated_SNPs_28480 0 0 1 0 1 SKIL chr3:170110047 3'AG 170110047 Downstream 66bp
chr3 170110112 170110112 1 + C G LUAD 170110110 + 170110090 170110130 41 GGCAAGAACTCCAAGATGAACTCAGACAGGAACGGGAAGCA GGCAAGAACTCCAAGATGAACTGAGACAGGAACGGGAAGCA < 41bp 1 0.649070908955992 1 0.439980179071426 experiment 0.701858182088015 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIL ENSG00000136603 CDS Human protein_coding chr3:170110110 chr3:170110112 synonymous SNV . 0 23 hm5C_associated_SNPs_28481 0 0 1 0 1 SKIL chr3:170110047 3'AG 170110047 Downstream 66bp
chr2 238005469 238005469 1 + A T LUAD 238005475 + 238005455 238005495 41 TTGAATTTAGTTGCAGGGGCCCTGGATGTTTCCTTTAACAA TTGAATTTAGTTGCTGGGGCCCTGGATGTTTCCTTTAACAA < 41bp 1 0.104739782241984 1 0.195703327655792 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COPS8 ENSG00000198612 CDS Human protein_coding chr2:238005475 chr2:238005469 synonymous SNV . 0 15 hm5C_associated_SNPs_28482 0 0 1 0 2 COPS8 chr2:238005465 3'AG 238005465 Downstream 5bp
chr2 238005469 238005469 1 + A T LUAD 238005475 + 238005455 238005495 41 TTGAATTTAGTTGCAGGGGCCCTGGATGTTTCCTTTAACAA TTGAATTTAGTTGCTGGGGCCCTGGATGTTTCCTTTAACAA < 41bp 1 0.104739782241984 1 0.195703327655792 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COPS8 ENSG00000198612 CDS Human protein_coding chr2:238005475 chr2:238005469 synonymous SNV . 0 15 hm5C_associated_SNPs_28482 0 0 1 0 2 COPS8 chr2:238005512 5'GT 238005512 Upstream 44bp
chr19 14512314 14512314 1 + G C LUAD 14512320 + 14512300 14512340 41 CTTGAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA CTTGAAGATATCATCAGGATCCTGGCCAAGAGCCTGCCTAA < 41bp 1 0.275753446702235 1 0.0515044629573822 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14512320 chr19:14512314 nonsynonymous SNV 0.002 1 15 hm5C_associated_SNPs_28483 0 0 1 0 1 ADGRE5 chr19:14512375 5'GT 14512375 Upstream 62bp
chr3 66431236 66431236 1 - A G LUAD 66431223 - 66431203 66431243 41 TGGACTGTTACTCCAGGGGACAAGCCTTCCACCCCCAGCCT TGGACTGCTACTCCAGGGGACAAGCCTTCCACCCCCAGCCT < 41bp 1 0.190507149032524 1 0.188139915466309 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66431223 chr3:66431236 synonymous SNV . 0 8 hm5C_associated_SNPs_28489 0 0 1 0 1 LRIG1 chr3:66431285 3'AG 66431285 Downstream 50bp
chr6 44107279 44107279 1 + G T LUAD 44107298 + 44107278 44107318 41 TGCTGGTGGTTGTGGGCGTCCTCTCCGTAGGCATCGTGCTG TTCTGGTGGTTGTGGGCGTCCTCTCCGTAGGCATCGTGCTG < 41bp 1 0.347662266708723 1 0.145701169967651 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44107298 chr6:44107279 synonymous SNV . 0 2 hm5C_associated_SNPs_28491 0 0 1 0 2 TMEM63B chr6:44107204 3'AG 44107204 Downstream 76bp
chr6 44107279 44107279 1 + G T LUAD 44107298 + 44107278 44107318 41 TGCTGGTGGTTGTGGGCGTCCTCTCCGTAGGCATCGTGCTG TTCTGGTGGTTGTGGGCGTCCTCTCCGTAGGCATCGTGCTG < 41bp 1 0.347662266708723 1 0.145701169967651 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44107298 chr6:44107279 synonymous SNV . 0 2 hm5C_associated_SNPs_28491 0 0 1 0 2 TMEM63B chr6:44107346 5'GT 44107346 Upstream 68bp
chr6 1391291 1391291 1 + G C LUAD 1391304 + 1391284 1391324 41 CACTCCAGCATGTCCTCCTACTCGCTGGAGCAGAGCTACTT CACTCCACCATGTCCTCCTACTCGCTGGAGCAGAGCTACTT < 41bp 1 0.391617936675145 1 0.284998804330826 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXF2 ENSG00000137273 CDS Human protein_coding chr6:1391304 chr6:1391291 nonsynonymous SNV 0.992 2 8 hm5C_associated_SNPs_28492 0 0 1 0 1 FOXF2 chr6:1391353 5'GT 1391353 Upstream 63bp
chr17 61489411 61489411 1 + G A LUAD 61489416 + 61489396 61489436 41 ACGTTGACTACAGTGGAATGCGCCCTTTGGATAGGGCAGTG ACGTTGACTACAGTGAAATGCGCCCTTTGGATAGGGCAGTG < 41bp 1 0.325614840355622 1 0.132415175437927 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TANC2 ENSG00000170921 CDS Human protein_coding chr17:61489416 chr17:61489411 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_28493 0 0 0 0 2 TANC2 chr17:61489359 3'AG 61489359 Downstream 53bp
chr17 61489411 61489411 1 + G A LUAD 61489416 + 61489396 61489436 41 ACGTTGACTACAGTGGAATGCGCCCTTTGGATAGGGCAGTG ACGTTGACTACAGTGAAATGCGCCCTTTGGATAGGGCAGTG < 41bp 1 0.325614840355622 1 0.132415175437927 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TANC2 ENSG00000170921 CDS Human protein_coding chr17:61489416 chr17:61489411 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_28493 0 0 0 0 2 TANC2 chr17:61489491 5'GT 61489491 Upstream 81bp
chrX 105891594 105891594 1 + G C LUAD 105891593 + 105891573 105891613 41 ACAAACAAAGGGAATTAAACCGGGCATGCCAAGCATCTTCA ACAAACAAAGGGAATTAAACCCGGCATGCCAAGCATCTTCA < 41bp 1 0.408096808949941 1 0.408377289772034 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105891593 chrX:105891594 synonymous SNV . 0 22 hm5C_associated_SNPs_28494 0 0 0 0 1 CXorf57 chrX:105891616 5'GT 105891616 Upstream 23bp
chr9 127561676 127561676 1 + A T LUAD 127561684 + 127561664 127561704 41 TGCTGGGCATCAAGAAGGAGCTGTCCCGCCTGGGCCTCCAG TGCTGGGCATCATGAAGGAGCTGTCCCGCCTGGGCCTCCAG < 41bp 1 0.0958195772772045 1 0.105729818344116 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OLFML2A ENSG00000185585 CDS Human protein_coding chr9:127561684 chr9:127561676 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_28496 0 0 1 0 1 OLFML2A chr9:127561770 5'GT 127561770 Upstream 95bp
chr4 41652437 41652437 1 + G C LUAD 41652424 + 41652404 41652444 41 TTATAGGTAGACGGGAAAGTCAGTGTGAATGGAGAGACGGT TTATAGGTAGACGGGAAAGTCAGTGTGAATGGACAGACGGT < 41bp 1 0.356869877578743 1 0.383950710296631 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41652424 chr4:41652437 nonsynonymous SNV 0.835 4 34 hm5C_associated_SNPs_28501 0 0 1 0 1 LIMCH1 chr4:41652410 3'AG 41652410 Downstream 28bp
chr7 150840470 150840470 1 + G A LUSC 150840477 + 150840457 150840497 41 AGTATGAACAGAAGCTCTTCCTGGCCCCACTGCCAAGCTCA AGTATGAACAGAAACTCTTCCTGGCCCCACTGCCAAGCTCA < 41bp 1 0.308845139857643 1 0.133706599473953 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150840477 chr7:150840470 synonymous SNV . 0 14 hm5C_associated_SNPs_28502 0 0 1 0 1 AGAP3 chr7:150840428 3'AG 150840428 Downstream 43bp
chr2 232576121 232576121 1 + G T LUSC 232576110 + 232576090 232576130 41 GGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCTG GGCAGAAAATGGAAGAGACGCCCCTGCTAACTGGAATGCTG < 41bp 1 0.246879195223357 1 0.0528959929943085 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576110 chr2:232576121 nonsynonymous SNV 0.995 3 32 hm5C_associated_SNPs_28503 0 0 1 0 2 PTMA chr2:232576058 3'AG 232576058 Downstream 64bp
chr2 232576121 232576121 1 + G T LUSC 232576110 + 232576090 232576130 41 GGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCTG GGCAGAAAATGGAAGAGACGCCCCTGCTAACTGGAATGCTG < 41bp 1 0.246879195223357 1 0.0528959929943085 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576110 chr2:232576121 nonsynonymous SNV 0.995 3 32 hm5C_associated_SNPs_28503 0 0 1 0 2 PTMA chr2:232576129 5'GT 232576129 Upstream 9bp
chr2 232576121 232576121 1 + G T LUSC 232576128 + 232576108 232576148 41 CGCCCCTGCTAACGGGAATGCTGTGAGTGTCTGCTTTGCTC CGCCCCTGCTAACTGGAATGCTGTGAGTGTCTGCTTTGCTC < 41bp 1 0.497747715388458 1 0.132533133029938 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576128 chr2:232576121 nonsynonymous SNV 0.995 3 14 hm5C_associated_SNPs_28504 0 0 1 0 2 PTMA chr2:232576058 3'AG 232576058 Downstream 64bp
chr2 232576121 232576121 1 + G T LUSC 232576128 + 232576108 232576148 41 CGCCCCTGCTAACGGGAATGCTGTGAGTGTCTGCTTTGCTC CGCCCCTGCTAACTGGAATGCTGTGAGTGTCTGCTTTGCTC < 41bp 1 0.497747715388458 1 0.132533133029938 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576128 chr2:232576121 nonsynonymous SNV 0.995 3 14 hm5C_associated_SNPs_28504 0 0 1 0 2 PTMA chr2:232576129 5'GT 232576129 Upstream 9bp
chr20 19981329 19981329 1 + A G LUSC 19981314 + 19981294 19981334 41 GTTGCACAGGAAAGACCCTCCTTGTGAGACCTTACATCACC GTTGCACAGGAAAGACCCTCCTTGTGAGACCTTACGTCACC < 41bp 1 0.419327077388549 1 0.298429429531097 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIN2 ENSG00000132669 CDS Human protein_coding chr20:19981314 chr20:19981329 nonsynonymous SNV 0.137 0 36 hm5C_associated_SNPs_28508 0 0 1 0 1 RIN2 chr20:19981257 3'AG 19981257 Downstream 73bp
chr1 874711 874711 1 + C G LUSC 874694 + 874674 874714 41 GGAGCTGGGGCCCAGCATGGCCCCGGAGGACCATTACCGCC GGAGCTGGGGCCCAGCATGGCCCCGGAGGACCATTACGGCC < 41bp 1 0.643739838872761 1 0.171914786100388 experiment 0.712520322254478 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874694 chr1:874711 nonsynonymous SNV 0.194 1 38 hm5C_associated_SNPs_28510 0 0 1 0 2 SAMD11 chr1:874652 3'AG 874652 Downstream 60bp
chr1 874711 874711 1 + C G LUSC 874694 + 874674 874714 41 GGAGCTGGGGCCCAGCATGGCCCCGGAGGACCATTACCGCC GGAGCTGGGGCCCAGCATGGCCCCGGAGGACCATTACGGCC < 41bp 1 0.643739838872761 1 0.171914786100388 experiment 0.712520322254478 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874694 chr1:874711 nonsynonymous SNV 0.194 1 38 hm5C_associated_SNPs_28510 0 0 1 0 2 SAMD11 chr1:874792 5'GT 874792 Upstream 82bp
chr1 874711 874711 1 + C G LUSC 874695 + 874675 874715 41 GAGCTGGGGCCCAGCATGGCCCCGGAGGACCATTACCGCCG GAGCTGGGGCCCAGCATGGCCCCGGAGGACCATTACGGCCG < 41bp 1 0.749673018641553 1 0.441164463758469 experiment 0.500653962716895 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874695 chr1:874711 nonsynonymous SNV 0.194 1 37 hm5C_associated_SNPs_28511 0 0 1 0 2 SAMD11 chr1:874652 3'AG 874652 Downstream 60bp
chr1 874711 874711 1 + C G LUSC 874695 + 874675 874715 41 GAGCTGGGGCCCAGCATGGCCCCGGAGGACCATTACCGCCG GAGCTGGGGCCCAGCATGGCCCCGGAGGACCATTACGGCCG < 41bp 1 0.749673018641553 1 0.441164463758469 experiment 0.500653962716895 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874695 chr1:874711 nonsynonymous SNV 0.194 1 37 hm5C_associated_SNPs_28511 0 0 1 0 2 SAMD11 chr1:874792 5'GT 874792 Upstream 82bp
chr7 73944172 73944172 1 + G A LUSC 73944163 + 73944143 73944183 41 GGGCATCCCGGACAAGATCCCCTTCAAGCGCCCCTGCACTT GGGCATCCCGGACAAGATCCCCTTCAAGCACCCCTGCACTT < 41bp 1 0.0238269428424223 1 0.155773311853409 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73944163 chr7:73944172 nonsynonymous SNV 0.996 3 30 hm5C_associated_SNPs_28513 0 0 1 0 1 GTF2IRD1 chr7:73944247 5'GT 73944247 Upstream 76bp
chr6 31929803 31929803 1 + A G LUSC 31929807 + 31929787 31929827 41 TGTGGCTGAATATGCCATTGCCCTGGCCCAGAAACACATGA TGTGGCTGAATATGCCGTTGCCCTGGCCCAGAAACACATGA < 41bp 1 0.155751484266114 1 0.0623363554477692 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31929807 chr6:31929803 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_28514 0 0 0 0 1 SKIV2L chr6:31929831 5'GT 31929831 Upstream 29bp
chr19 11096052 11096052 1 + C T LUSC 11096032 + 11096012 11096052 41 ATGGGGATGCGGTCAGGGGGCCATGCTGGGATGGGGCCCCC ATGGGGATGCGGTCAGGGGGCCATGCTGGGATGGGGCCCCT < 41bp 1 0.254540750603923 1 0.385194301605225 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11096032 chr19:11096052 nonsynonymous SNV 0.808 5 41 hm5C_associated_SNPs_28515 1 0 1 0 1 SMARCA4 chr19:11096081 5'GT 11096081 Upstream 30bp
chr17 37359337 37359337 1 + G A LUSC 37359319 + 37359299 37359339 41 GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAA GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTAAA < 41bp 1 0.361846223013669 1 0.0980159640312195 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359319 chr17:37359337 nonsynonymous SNV 0.444 2 39 hm5C_associated_SNPs_28516 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 96bp
chr17 37359337 37359337 1 + G A LUSC 37359319 + 37359299 37359339 41 GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAA GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTAAA < 41bp 1 0.361846223013669 1 0.0980159640312195 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359319 chr17:37359337 nonsynonymous SNV 0.444 2 39 hm5C_associated_SNPs_28516 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 26bp
chr17 37359337 37359337 1 + G A LUSC 37359322 + 37359302 37359342 41 TGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCT TGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTAAATCT < 41bp 1 0.477728610604511 1 0.143285661935806 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359322 chr17:37359337 nonsynonymous SNV 0.444 2 36 hm5C_associated_SNPs_28517 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 96bp
chr17 37359337 37359337 1 + G A LUSC 37359322 + 37359302 37359342 41 TGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCT TGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTAAATCT < 41bp 1 0.477728610604511 1 0.143285661935806 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359322 chr17:37359337 nonsynonymous SNV 0.444 2 36 hm5C_associated_SNPs_28517 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 26bp
chr17 37359337 37359337 1 + G A LUSC 37359333 + 37359313 37359353 41 CGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGA CGCCGGCTGCTCAGAAGATACCGTAAATCTAAGAAGATCGA < 41bp 1 0.341357975422268 1 0.190246552228928 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359333 chr17:37359337 nonsynonymous SNV 0.444 2 25 hm5C_associated_SNPs_28518 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 96bp
chr17 37359337 37359337 1 + G A LUSC 37359333 + 37359313 37359353 41 CGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGA CGCCGGCTGCTCAGAAGATACCGTAAATCTAAGAAGATCGA < 41bp 1 0.341357975422268 1 0.190246552228928 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359333 chr17:37359337 nonsynonymous SNV 0.444 2 25 hm5C_associated_SNPs_28518 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 26bp
chr17 37359337 37359337 1 + G A LUSC 37359334 + 37359314 37359354 41 GCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGAT GCCGGCTGCTCAGAAGATACCGTAAATCTAAGAAGATCGAT < 41bp 1 0.552293648982667 1 0.351287126541138 experiment 0.895412702034667 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359334 chr17:37359337 nonsynonymous SNV 0.444 2 24 hm5C_associated_SNPs_28519 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 96bp
chr17 37359337 37359337 1 + G A LUSC 37359334 + 37359314 37359354 41 GCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGAT GCCGGCTGCTCAGAAGATACCGTAAATCTAAGAAGATCGAT < 41bp 1 0.552293648982667 1 0.351287126541138 experiment 0.895412702034667 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359334 chr17:37359337 nonsynonymous SNV 0.444 2 24 hm5C_associated_SNPs_28519 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 26bp
chr19 52714673 52714673 1 + G A LUSC 52714692 + 52714672 52714712 41 CGCACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCG CACACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCG < 41bp 1 0.418916991265036 1 0.0607351064682007 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52714692 chr19:52714673 nonsynonymous SNV 0.985 4 2 hm5C_associated_SNPs_28520 0 0 1 0 1 PPP2R1A chr19:52714745 5'GT 52714745 Upstream 73bp
chr10 121677443 121677443 1 + A T LUSC 121677432 + 121677412 121677452 41 CTAGATATTTTATTTTATAACAGCCCCACCTACTGTCAGAC CTAGATATTTTATTTTATAACAGCCCCACCTTCTGTCAGAC < 41bp 1 0.240460484843486 1 0.190818548202515 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC23IP ENSG00000107651 CDS Human protein_coding chr10:121677432 chr10:121677443 nonsynonymous SNV 0.998 4 32 hm5C_associated_SNPs_28521 0 0 1 0 1 SEC23IP chr10:121677348 3'AG 121677348 Downstream 96bp
chr10 118314941 118314941 1 + C G LUSC 118314925 + 118314905 118314945 41 GGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTTTCCAAA GGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTTTGCAAA < 41bp 1 0.111150420270601 1 0.0676183104515076 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314925 chr10:118314941 nonsynonymous SNV 1.000 5 37 hm5C_associated_SNPs_28523 0 0 0 0 1 PNLIP chr10:118315019 5'GT 118315019 Upstream 79bp
chr7 43591845 43591845 1 + G A LUSC 43591843 + 43591823 43591863 41 TGTAGACTCGAGGCTGGTGTCCGTGTTTGATGCCAGGGAGC TGTAGACTCGAGGCTGGTGTCCATGTTTGATGCCAGGGAGC < 41bp 1 0.110727950914722 1 0.311273515224457 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43591843 chr7:43591845 nonsynonymous SNV 0.979 4 23 hm5C_associated_SNPs_28524 0 0 0 0 2 HECW1 chr7:43591821 3'AG 43591821 Downstream 25bp
chr7 43591845 43591845 1 + G A LUSC 43591843 + 43591823 43591863 41 TGTAGACTCGAGGCTGGTGTCCGTGTTTGATGCCAGGGAGC TGTAGACTCGAGGCTGGTGTCCATGTTTGATGCCAGGGAGC < 41bp 1 0.110727950914722 1 0.311273515224457 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43591843 chr7:43591845 nonsynonymous SNV 0.979 4 23 hm5C_associated_SNPs_28524 0 0 0 0 2 HECW1 chr7:43591935 5'GT 43591935 Upstream 91bp
chr12 70760802 70760802 1 + T C LUSC 70760809 + 70760789 70760829 41 CTGAGTCCAACTCTAGGGCGCTGCTGCACAGCGACGAGCAC CTGAGTCCAACTCCAGGGCGCTGCTGCACAGCGACGAGCAC < 41bp 1 0.347286094408183 1 0.0375682711601257 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KCNMB4 ENSG00000135643 CDS Human protein_coding chr12:70760809 chr12:70760802 synonymous SNV . 0 14 hm5C_associated_SNPs_28529 0 0 1 0 1 KCNMB4 chr12:70760850 5'GT 70760850 Upstream 49bp
chr19 48259067 48259067 1 + C G LUSC 48259063 + 48259043 48259083 41 GAGCTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGGTGC GAGCTCGGAGCTGACAGACTCGCTGAGGACCCTGAAGGTGC < 41bp 1 0.497268379499347 1 0.119084984064102 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259063 chr19:48259067 synonymous SNV . 0 25 hm5C_associated_SNPs_28531 0 0 1 0 2 NOP53 chr19:48259013 3'AG 48259013 Downstream 55bp
chr19 48259067 48259067 1 + C G LUSC 48259063 + 48259043 48259083 41 GAGCTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGGTGC GAGCTCGGAGCTGACAGACTCGCTGAGGACCCTGAAGGTGC < 41bp 1 0.497268379499347 1 0.119084984064102 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259063 chr19:48259067 synonymous SNV . 0 25 hm5C_associated_SNPs_28531 0 0 1 0 2 NOP53 chr19:48259079 5'GT 48259079 Upstream 13bp
chr3 184040733 184040733 1 + G T LUSC 184040721 + 184040701 184040741 41 CCAGAGGGATTGCCACATATCAGTGACGTGGTGCTGGACAA CCAGAGGGATTGCCACATATCAGTGACGTGGTTCTGGACAA < 41bp 1 0.687058142824294 1 0.332542181015015 experiment 0.625883714351412 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184040721 chr3:184040733 synonymous SNV . 0 33 hm5C_associated_SNPs_28532 0 0 1 0 1 EIF4G1 chr3:184040742 5'GT 184040742 Upstream 10bp
chr6 43189438 43189438 1 + A T LUSC 43189429 + 43189409 43189449 41 AGCTTCCTCCATAGCATGACCTGTGCCAAATGTAACCATGG AGCTTCCTCCATAGCATGACCTGTGCCAATTGTAACCATGG < 41bp 1 0.133680180024681 1 0.110608756542206 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43189429 chr6:43189438 nonsynonymous SNV 0.999 3 30 hm5C_associated_SNPs_28534 0 0 0 0 2 CUL9 chr6:43189423 3'AG 43189423 Downstream 16bp
chr6 43189438 43189438 1 + A T LUSC 43189429 + 43189409 43189449 41 AGCTTCCTCCATAGCATGACCTGTGCCAAATGTAACCATGG AGCTTCCTCCATAGCATGACCTGTGCCAATTGTAACCATGG < 41bp 1 0.133680180024681 1 0.110608756542206 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43189429 chr6:43189438 nonsynonymous SNV 0.999 3 30 hm5C_associated_SNPs_28534 0 0 0 0 2 CUL9 chr6:43189516 5'GT 43189516 Upstream 79bp
chr11 810332 810332 1 + A T LUSC 810330 + 810310 810350 41 ATCTTGGACAGCGTGGGTATCGAGGCGGACGACGACCGGCT ATCTTGGACAGCGTGGGTATCGTGGCGGACGACGACCGGCT < 41bp 1 0.788453679703792 1 0.500932216644287 experiment 0.423092640592417 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPLP2 ENSG00000177600 CDS Human protein_coding chr11:810330 chr11:810332 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_28535 0 0 1 0 2 RPLP2 chr11:810234 3'AG 810234 Downstream 99bp
chr11 810332 810332 1 + A T LUSC 810330 + 810310 810350 41 ATCTTGGACAGCGTGGGTATCGAGGCGGACGACGACCGGCT ATCTTGGACAGCGTGGGTATCGTGGCGGACGACGACCGGCT < 41bp 1 0.788453679703792 1 0.500932216644287 experiment 0.423092640592417 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPLP2 ENSG00000177600 CDS Human protein_coding chr11:810330 chr11:810332 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_28535 0 0 1 0 2 RPLP2 chr11:810357 5'GT 810357 Upstream 26bp
chr11 810332 810332 1 + A T LUSC 810346 + 810326 810366 41 GTATCGAGGCGGACGACGACCGGCTCAACAAGGTAGCGGCC GTATCGTGGCGGACGACGACCGGCTCAACAAGGTAGCGGCC < 41bp 1 0.693284794504407 1 0.445269465446472 experiment 0.613430410991185 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPLP2 ENSG00000177600 CDS Human protein_coding chr11:810346 chr11:810332 nonsynonymous SNV 0.997 4 7 hm5C_associated_SNPs_28536 0 0 1 0 2 RPLP2 chr11:810234 3'AG 810234 Downstream 99bp
chr11 810332 810332 1 + A T LUSC 810346 + 810326 810366 41 GTATCGAGGCGGACGACGACCGGCTCAACAAGGTAGCGGCC GTATCGTGGCGGACGACGACCGGCTCAACAAGGTAGCGGCC < 41bp 1 0.693284794504407 1 0.445269465446472 experiment 0.613430410991185 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPLP2 ENSG00000177600 CDS Human protein_coding chr11:810346 chr11:810332 nonsynonymous SNV 0.997 4 7 hm5C_associated_SNPs_28536 0 0 1 0 2 RPLP2 chr11:810357 5'GT 810357 Upstream 26bp
chr15 52353627 52353627 1 + C G LUSC 52353617 + 52353597 52353637 41 ATGGATGAGCCAATTTCAAGCCATCCTTTTCATATTGAAGA ATGGATGAGCCAATTTCAAGCCATCCTTTTGATATTGAAGA < 41bp 1 0.0340774388393299 1 0.201988518238068 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52353617 chr15:52353627 nonsynonymous SNV 0.998 1 31 hm5C_associated_SNPs_28539 0 0 1 0 1 MAPK6 chr15:52353697 5'GT 52353697 Upstream 71bp
chr16 29819136 29819136 1 + A T LUSC 29819141 + 29819121 29819161 41 TGCTCCCACTGTGGCAAGAGCTTCTCCCGGTGTGCACGGGG TGCTCCCACTGTGGCTAGAGCTTCTCCCGGTGTGCACGGGG < 41bp 1 0.133227273550634 1 0.0931947231292725 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAZ ENSG00000103495 CDS Human protein_coding chr16:29819141 chr16:29819136 stopgain 1.000 0 16 hm5C_associated_SNPs_28540 0 0 1 0 1 MAZ chr16:29819149 5'GT 29819149 Upstream 14bp
chr3 66430866 66430866 1 - C T LUSC 66430873 - 66430853 66430893 41 GCAAGGTTGTATCACCCGGACTCCACAGAGCTACAGCCTGC GCAAGGTTGTATCACCCGGACTCCACAAAGCTACAGCCTGC < 41bp 1 0.534726152136138 1 0.641265511512756 experiment 0.930547695727724 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430873 chr3:66430866 nonsynonymous SNV 0.014 0 28 hm5C_associated_SNPs_28541 0 0 1 0 1 LRIG1 chr3:66430913 3'AG 66430913 Downstream 48bp
chr1 876646 876646 1 + G C LUSC 876631 + 876611 876651 41 GTCAGCGTCGGAAGCAGGGCCTGGCTCAGCACCGGGAGGGC GTCAGCGTCGGAAGCAGGGCCTGGCTCAGCACCGGCAGGGC < 41bp 1 0.717141212608272 1 0.369943261146545 experiment 0.565717574783457 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:876631 chr1:876646 nonsynonymous SNV 0.180 0 36 hm5C_associated_SNPs_28542 0 0 1 0 1 SAMD11 chr1:876686 5'GT 876686 Upstream 41bp
chr5 140076610 140076610 1 + A G LUSC 140076598 + 140076578 140076618 41 AACAAGCAGGCCCTGGAGGGCCTGGGAGACCTAAAGCTGCT AACAAGCAGGCCCTGGAGGGCCTGGGAGACCTGAAGCTGCT < 41bp 1 0.231922501850813 1 0.31829571723938 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HARS2 ENSG00000112855 CDS Human protein_coding chr5:140076598 chr5:140076610 synonymous SNV . 0 33 hm5C_associated_SNPs_28544 0 0 1 0 2 HARS2 chr5:140076528 3'AG 140076528 Downstream 83bp
chr5 140076610 140076610 1 + A G LUSC 140076598 + 140076578 140076618 41 AACAAGCAGGCCCTGGAGGGCCTGGGAGACCTAAAGCTGCT AACAAGCAGGCCCTGGAGGGCCTGGGAGACCTGAAGCTGCT < 41bp 1 0.231922501850813 1 0.31829571723938 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HARS2 ENSG00000112855 CDS Human protein_coding chr5:140076598 chr5:140076610 synonymous SNV . 0 33 hm5C_associated_SNPs_28544 0 0 1 0 2 HARS2 chr5:140076655 5'GT 140076655 Upstream 46bp
chrX 107814687 107814687 1 + G T LUSC 107814691 + 107814671 107814711 41 GTTTTCCTGGTTTACAGGGTCCTCCAGTAAGTTATAAAATT GTTTTCCTGGTTTACATGGTCCTCCAGTAAGTTATAAAATT < 41bp 1 0.0121185557526849 1 0.0662120878696442 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107814691 chrX:107814687 nonsynonymous SNV 0.999 1 17 hm5C_associated_SNPs_28545 0 0 1 0 2 COL4A5 chrX:107814643 3'AG 107814643 Downstream 45bp
chrX 107814687 107814687 1 + G T LUSC 107814691 + 107814671 107814711 41 GTTTTCCTGGTTTACAGGGTCCTCCAGTAAGTTATAAAATT GTTTTCCTGGTTTACATGGTCCTCCAGTAAGTTATAAAATT < 41bp 1 0.0121185557526849 1 0.0662120878696442 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107814691 chrX:107814687 nonsynonymous SNV 0.999 1 17 hm5C_associated_SNPs_28545 0 0 1 0 2 COL4A5 chrX:107814696 5'GT 107814696 Upstream 10bp
chr19 35749909 35749909 1 + G T LUSC 35749925 + 35749905 35749945 41 CCGTGGTCTCAGCCCAGGACCTCCAGGGGAACAATGAGGCC CCGTTGTCTCAGCCCAGGACCTCCAGGGGAACAATGAGGCC < 41bp 1 0.745986403170585 1 0.876098155975342 experiment 0.50802719365883 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35749925 chr19:35749909 synonymous SNV . 0 5 hm5C_associated_SNPs_28546 0 0 1 0 2 LSR chr19:35749848 3'AG 35749848 Downstream 62bp
chr19 35749909 35749909 1 + G T LUSC 35749925 + 35749905 35749945 41 CCGTGGTCTCAGCCCAGGACCTCCAGGGGAACAATGAGGCC CCGTTGTCTCAGCCCAGGACCTCCAGGGGAACAATGAGGCC < 41bp 1 0.745986403170585 1 0.876098155975342 experiment 0.50802719365883 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35749925 chr19:35749909 synonymous SNV . 0 5 hm5C_associated_SNPs_28546 0 0 1 0 2 LSR chr19:35749967 5'GT 35749967 Upstream 59bp
chr10 60580165 60580165 1 + G T LUSC 60580149 + 60580129 60580169 41 ATCGATCTTCAGACATTCCTCACTCTCACAGATCAGGATCT ATCGATCTTCAGACATTCCTCACTCTCACAGATCAGTATCT < 41bp 1 0.077619906460706 1 0.0821800231933594 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60580149 chr10:60580165 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_28547 0 0 1 0 2 BICC1 chr10:60580129 3'AG 60580129 Downstream 37bp
chr10 60580165 60580165 1 + G T LUSC 60580149 + 60580129 60580169 41 ATCGATCTTCAGACATTCCTCACTCTCACAGATCAGGATCT ATCGATCTTCAGACATTCCTCACTCTCACAGATCAGTATCT < 41bp 1 0.077619906460706 1 0.0821800231933594 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60580149 chr10:60580165 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_28547 0 0 1 0 2 BICC1 chr10:60580228 5'GT 60580228 Upstream 64bp
chr11 118369096 118369096 1 + C T LUSC 118369113 + 118369093 118369133 41 ATTCTGCCAAAAGCCAGGAGCCACCGTGGGTTGCTGTCTCA ATTTTGCCAAAAGCCAGGAGCCACCGTGGGTTGCTGTCTCA < 41bp 1 0.0217708548254592 1 0.178998112678528 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118369113 chr11:118369096 synonymous SNV . 0 4 hm5C_associated_SNPs_28548 0 0 1 0 1 KMT2A chr11:118369085 3'AG 118369085 Downstream 12bp
chr16 30998277 30998277 1 + C T LUSC 30998260 + 30998240 30998280 41 ACTTCTACCGCCAGGGCCTGCGCCTGGGAGGTTGGCTCTTC ACTTCTACCGCCAGGGCCTGCGCCTGGGAGGTTGGCTTTTC < 41bp 1 0.627507418664261 1 0.348633974790573 experiment 0.744985162671478 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSD3B7 ENSG00000099377 CDS Human protein_coding chr16:30998260 chr16:30998277 synonymous SNV . 0 38 hm5C_associated_SNPs_28549 0 0 0 0 1 HSD3B7 chr16:30998323 5'GT 30998323 Upstream 47bp
chr1 120269489 120269489 1 + G A LUSC 120269481 + 120269461 120269501 41 TCTATCCTTGCAGGCAGATTCCCCAGGCGACGGCTTCGATG TCTATCCTTGCAGGCAGATTCCCCAGGCAACGGCTTCGATG < 41bp 1 0.788182882212579 1 0.0893608629703522 experiment 0.423634235574841 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120269481 chr1:120269489 synonymous SNV . 0 29 hm5C_associated_SNPs_28550 1 0 1 0 2 PHGDH chr1:120269474 3'AG 120269474 Downstream 16bp
chr1 120269489 120269489 1 + G A LUSC 120269481 + 120269461 120269501 41 TCTATCCTTGCAGGCAGATTCCCCAGGCGACGGCTTCGATG TCTATCCTTGCAGGCAGATTCCCCAGGCAACGGCTTCGATG < 41bp 1 0.788182882212579 1 0.0893608629703522 experiment 0.423634235574841 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120269481 chr1:120269489 synonymous SNV . 0 29 hm5C_associated_SNPs_28550 1 0 1 0 2 PHGDH chr1:120269528 5'GT 120269528 Upstream 40bp
chr12 132546657 132546657 1 + G T LUSC 132546658 + 132546638 132546678 41 CTGTTTGCCTTTTCTAGACGCCGGGAGGCTCTGCTCCCGCC CTGTTTGCCTTTTCTAGACTCCGGGAGGCTCTGCTCCCGCC < 41bp 1 0.389112420467048 1 0.930741786956787 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546658 chr12:132546657 synonymous SNV . 0 20 hm5C_associated_SNPs_28551 0 0 0 0 1 EP400 chr12:132546655 3'AG 132546655 Downstream 3bp
chr12 132546657 132546657 1 + G T LUSC 132546659 + 132546639 132546679 41 TGTTTGCCTTTTCTAGACGCCGGGAGGCTCTGCTCCCGCCC TGTTTGCCTTTTCTAGACTCCGGGAGGCTCTGCTCCCGCCC < 41bp 1 0.765497824436779 1 0.907112002372742 experiment 0.469004351126442 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546659 chr12:132546657 synonymous SNV . 0 19 hm5C_associated_SNPs_28552 0 0 0 0 1 EP400 chr12:132546655 3'AG 132546655 Downstream 3bp
chr11 119142539 119142539 1 + C T LUSC 119142558 + 119142538 119142578 41 TCGGATTACTAAAGCAGATGCTGCGGAATTTTGGAGAAAAG TTGGATTACTAAAGCAGATGCTGCGGAATTTTGGAGAAAAG < 41bp 1 0.275525169715566 1 0.212976902723312 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CBL ENSG00000110395 CDS Human protein_coding chr11:119142558 chr11:119142539 nonsynonymous SNV 0.990 5 2 hm5C_associated_SNPs_28553 0 0 0 0 2 CBL chr11:119142445 3'AG 119142445 Downstream 95bp
chr11 119142539 119142539 1 + C T LUSC 119142558 + 119142538 119142578 41 TCGGATTACTAAAGCAGATGCTGCGGAATTTTGGAGAAAAG TTGGATTACTAAAGCAGATGCTGCGGAATTTTGGAGAAAAG < 41bp 1 0.275525169715566 1 0.212976902723312 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CBL ENSG00000110395 CDS Human protein_coding chr11:119142558 chr11:119142539 nonsynonymous SNV 0.990 5 2 hm5C_associated_SNPs_28553 0 0 0 0 2 CBL chr11:119142591 5'GT 119142591 Upstream 53bp
chr7 43580843 43580843 1 + C A LUSC 43580837 + 43580817 43580857 41 GACGCTTTCTTCACGAGGCCCTTCTACAAGGCACTCCTGAG GACGCTTTCTTCACGAGGCCCTTCTAAAAGGCACTCCTGAG < 41bp 1 0.0382241353431525 1 0.11330658197403 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43580837 chr7:43580843 stopgain 0.992 1 27 hm5C_associated_SNPs_28556 0 0 0 0 2 HECW1 chr7:43580762 3'AG 43580762 Downstream 82bp
chr7 43580843 43580843 1 + C A LUSC 43580837 + 43580817 43580857 41 GACGCTTTCTTCACGAGGCCCTTCTACAAGGCACTCCTGAG GACGCTTTCTTCACGAGGCCCTTCTAAAAGGCACTCCTGAG < 41bp 1 0.0382241353431525 1 0.11330658197403 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43580837 chr7:43580843 stopgain 0.992 1 27 hm5C_associated_SNPs_28556 0 0 0 0 2 HECW1 chr7:43580860 5'GT 43580860 Upstream 18bp
chr3 182597368 182597368 1 + A G LUSC 182597357 + 182597337 182597377 41 TATCTCTTGCACTCAGGGAGCATGAAAAACTATTTATGGAA TATCTCTTGCACTCAGGGAGCATGAAAAACTGTTTATGGAA < 41bp 1 0.479486626317193 1 0.59481143951416 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP11B ENSG00000058063 CDS Human protein_coding chr3:182597357 chr3:182597368 synonymous SNV . 0 32 hm5C_associated_SNPs_28557 0 0 1 0 2 ATP11B chr3:182597284 3'AG 182597284 Downstream 85bp
chr3 182597368 182597368 1 + A G LUSC 182597357 + 182597337 182597377 41 TATCTCTTGCACTCAGGGAGCATGAAAAACTATTTATGGAA TATCTCTTGCACTCAGGGAGCATGAAAAACTGTTTATGGAA < 41bp 1 0.479486626317193 1 0.59481143951416 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP11B ENSG00000058063 CDS Human protein_coding chr3:182597357 chr3:182597368 synonymous SNV . 0 32 hm5C_associated_SNPs_28557 0 0 1 0 2 ATP11B chr3:182597437 5'GT 182597437 Upstream 70bp
chr13 111111236 111111236 1 + A G LUSC 111111217 + 111111197 111111237 41 CGCAGGCATCAACGGGGAGCCGGGGAGGAAAGGGGACAGAG CGCAGGCATCAACGGGGAGCCGGGGAGGAAAGGGGACAGGG < 41bp 1 0.696227772089394 1 0.799197793006897 experiment 0.607544455821213 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111217 chr13:111111236 synonymous SNV . 0 40 hm5C_associated_SNPs_28558 0 0 0 0 1 COL4A2 chr13:111111281 5'GT 111111281 Upstream 46bp
chr17 27844513 27844513 1 + G T LUSC 27844497 + 27844477 27844517 41 AATGAAAACCAGAGTACCCCCAAAAAAGAAAAACAGGAGTG AATGAAAACCAGAGTACCCCCAAAAAAGAAAAACAGTAGTG < 41bp 1 0.269542425275464 1 0.584478259086609 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAOK1 ENSG00000160551 CDS Human protein_coding chr17:27844497 chr17:27844513 stopgain 0.991 1 37 hm5C_associated_SNPs_28559 0 0 1 0 1 TAOK1 chr17:27844471 3'AG 27844471 Downstream 43bp
chr19 36579962 36579962 1 + C T LUSC 36579965 + 36579945 36579985 41 AGAGACATCCAGATGATCAGCTGTGGGGCTGACAAGAGCAT AGAGACATCCAGATGATTAGCTGTGGGGCTGACAAGAGCAT < 41bp 1 0.334736211784795 1 0.216285228729248 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36579965 chr19:36579962 synonymous SNV . 0 18 hm5C_associated_SNPs_28567 0 0 1 0 2 WDR62 chr19:36579940 3'AG 36579940 Downstream 23bp
chr19 36579962 36579962 1 + C T LUSC 36579965 + 36579945 36579985 41 AGAGACATCCAGATGATCAGCTGTGGGGCTGACAAGAGCAT AGAGACATCCAGATGATTAGCTGTGGGGCTGACAAGAGCAT < 41bp 1 0.334736211784795 1 0.216285228729248 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36579965 chr19:36579962 synonymous SNV . 0 18 hm5C_associated_SNPs_28567 0 0 1 0 2 WDR62 chr19:36580007 5'GT 36580007 Upstream 46bp
chr5 14280498 14280498 1 + A T LUSC 14280517 + 14280497 14280537 41 GACAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCCTGT GTCAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCCTGT < 41bp 1 0.298771650135497 1 0.10762882232666 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14280517 chr5:14280498 synonymous SNV . 0 2 hm5C_associated_SNPs_28568 0 0 1 0 2 TRIO chr5:14280431 3'AG 14280431 Downstream 68bp
chr5 14280498 14280498 1 + A T LUSC 14280517 + 14280497 14280537 41 GACAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCCTGT GTCAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCCTGT < 41bp 1 0.298771650135497 1 0.10762882232666 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14280517 chr5:14280498 synonymous SNV . 0 2 hm5C_associated_SNPs_28568 0 0 1 0 2 TRIO chr5:14280545 5'GT 14280545 Upstream 48bp
chr19 50385600 50385600 1 + C T LUSC 50385593 + 50385573 50385613 41 GCAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCGC GCAGCCACAGCCTGAGGGAGCCGCCTCTGACCTTCCCCCGC < 41bp 1 0.296552434695099 1 0.167969614267349 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385593 chr19:50385600 synonymous SNV . 0 28 hm5C_associated_SNPs_28571 0 0 1 0 1 TBC1D17 chr19:50385657 5'GT 50385657 Upstream 58bp
chr19 50385600 50385600 1 + C T LUSC 50385594 + 50385574 50385614 41 CAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCGCC CAGCCACAGCCTGAGGGAGCCGCCTCTGACCTTCCCCCGCC < 41bp 1 0.614224669203567 1 0.467171281576157 experiment 0.771550661592866 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385594 chr19:50385600 synonymous SNV . 0 27 hm5C_associated_SNPs_28572 0 0 1 0 1 TBC1D17 chr19:50385657 5'GT 50385657 Upstream 58bp
chr1 193205409 193205409 1 + T A LUSC 193205390 + 193205370 193205410 41 ACTTTTCTACTTGTAGGGACCGCGTTGTAGCCGTTTTTGTG ACTTTTCTACTTGTAGGGACCGCGTTGTAGCCGTTTTTGAG < 41bp 1 0.679730081109017 1 0.379281759262085 experiment 0.640539837781966 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC73 ENSG00000134371 CDS Human protein_coding chr1:193205390 chr1:193205409 nonsynonymous SNV 0.998 4 40 hm5C_associated_SNPs_28573 0 0 1 0 2 CDC73 chr1:193205386 3'AG 193205386 Downstream 24bp
chr1 193205409 193205409 1 + T A LUSC 193205390 + 193205370 193205410 41 ACTTTTCTACTTGTAGGGACCGCGTTGTAGCCGTTTTTGTG ACTTTTCTACTTGTAGGGACCGCGTTGTAGCCGTTTTTGAG < 41bp 1 0.679730081109017 1 0.379281759262085 experiment 0.640539837781966 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC73 ENSG00000134371 CDS Human protein_coding chr1:193205390 chr1:193205409 nonsynonymous SNV 0.998 4 40 hm5C_associated_SNPs_28573 0 0 1 0 2 CDC73 chr1:193205486 5'GT 193205486 Upstream 78bp
chr8 68087623 68087623 1 + G C LUSC 68087626 + 68087606 68087646 41 AGCAAGCCCTGCTAAGAGAGCAGCAGAAGAGGCTGAACAGA AGCAAGCCCTGCTAAGACAGCAGCAGAAGAGGCTGAACAGA < 41bp 1 0.734121412415816 1 0.391477048397064 experiment 0.531757175168369 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68087626 chr8:68087623 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_28574 0 0 1 0 2 CSPP1 chr8:68087531 3'AG 68087531 Downstream 93bp
chr8 68087623 68087623 1 + G C LUSC 68087626 + 68087606 68087646 41 AGCAAGCCCTGCTAAGAGAGCAGCAGAAGAGGCTGAACAGA AGCAAGCCCTGCTAAGACAGCAGCAGAAGAGGCTGAACAGA < 41bp 1 0.734121412415816 1 0.391477048397064 experiment 0.531757175168369 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68087626 chr8:68087623 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_28574 0 0 1 0 2 CSPP1 chr8:68087671 5'GT 68087671 Upstream 49bp
chr2 197583269 197583269 1 + A T LUSC 197583260 + 197583240 197583280 41 TTGAAAGAAGTAAAGAGGAGCTGTCCCGAACAGTGAAGTGT TTGAAAGAAGTAAAGAGGAGCTGTCCCGATCAGTGAAGTGT < 41bp 1 0.0427447481345952 1 0.123191267251968 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197583260 chr2:197583269 nonsynonymous SNV 0.020 1 30 hm5C_associated_SNPs_28575 0 0 0 0 1 CCDC150 chr2:197583227 3'AG 197583227 Downstream 43bp
chr17 7836605 7836605 1 + G C LUSC 7836604 + 7836584 7836624 41 CCGCCTCATGAAGGGTTAGACGGCTTCGCCCAAGAATTGAG CCGCCTCATGAAGGGTTAGACCGCTTCGCCCAAGAATTGAG < 41bp 1 0.248481854822895 1 0.0967779755592346 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNTROB ENSG00000170037 CDS Human protein_coding chr17:7836604 chr17:7836605 nonsynonymous SNV 0.045 1 22 hm5C_associated_SNPs_28577 0 0 1 0 1 CNTROB chr17:7836667 5'GT 7836667 Upstream 63bp
chrX 149924208 149924208 1 + G C LUSC 149924206 + 149924186 149924226 41 TATGGTCGTATATCAATAGCCAGCTAGACGAGTTTTCTAAT TATGGTCGTATATCAATAGCCACCTAGACGAGTTTTCTAAT < 41bp 1 0.270869561071229 1 0.168064415454865 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149924206 chrX:149924208 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_28578 0 0 0 0 1 MTMR1 chrX:149924161 3'AG 149924161 Downstream 48bp
chr2 238005479 238005479 1 + G T LUSC 238005475 + 238005455 238005495 41 TTGAATTTAGTTGCAGGGGCCCTGGATGTTTCCTTTAACAA TTGAATTTAGTTGCAGGGGCCCTGTATGTTTCCTTTAACAA < 41bp 1 0.0513449820217485 1 0.0854389071464539 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COPS8 ENSG00000198612 CDS Human protein_coding chr2:238005475 chr2:238005479 nonsynonymous SNV 0.842 3 25 hm5C_associated_SNPs_28581 0 0 1 0 2 COPS8 chr2:238005465 3'AG 238005465 Downstream 15bp
chr2 238005479 238005479 1 + G T LUSC 238005475 + 238005455 238005495 41 TTGAATTTAGTTGCAGGGGCCCTGGATGTTTCCTTTAACAA TTGAATTTAGTTGCAGGGGCCCTGTATGTTTCCTTTAACAA < 41bp 1 0.0513449820217485 1 0.0854389071464539 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COPS8 ENSG00000198612 CDS Human protein_coding chr2:238005475 chr2:238005479 nonsynonymous SNV 0.842 3 25 hm5C_associated_SNPs_28581 0 0 1 0 2 COPS8 chr2:238005512 5'GT 238005512 Upstream 34bp
chr7 128478840 128478840 1 + C G LUSC 128478838 + 128478818 128478858 41 CCCATCACCCGCAGTCCCTTCCCTGTCCATGTGTCGGAAGG CCCATCACCCGCAGTCCCTTCCGTGTCCATGTGTCGGAAGG < 41bp 1 0.0871818842945602 1 0.0469450354576111 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128478838 chr7:128478840 nonsynonymous SNV 0.993 0 23 hm5C_associated_SNPs_28582 0 0 1 0 1 FLNC chr7:128478857 5'GT 128478857 Upstream 18bp
chr2 238005478 238005478 1 + G T LUSC 238005475 + 238005455 238005495 41 TTGAATTTAGTTGCAGGGGCCCTGGATGTTTCCTTTAACAA TTGAATTTAGTTGCAGGGGCCCTTGATGTTTCCTTTAACAA < 41bp 1 0.0242104886661666 1 0.106309026479721 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COPS8 ENSG00000198612 CDS Human protein_coding chr2:238005475 chr2:238005478 synonymous SNV . 0 24 hm5C_associated_SNPs_28583 0 0 1 0 2 COPS8 chr2:238005465 3'AG 238005465 Downstream 14bp
chr2 238005478 238005478 1 + G T LUSC 238005475 + 238005455 238005495 41 TTGAATTTAGTTGCAGGGGCCCTGGATGTTTCCTTTAACAA TTGAATTTAGTTGCAGGGGCCCTTGATGTTTCCTTTAACAA < 41bp 1 0.0242104886661666 1 0.106309026479721 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COPS8 ENSG00000198612 CDS Human protein_coding chr2:238005475 chr2:238005478 synonymous SNV . 0 24 hm5C_associated_SNPs_28583 0 0 1 0 2 COPS8 chr2:238005512 5'GT 238005512 Upstream 35bp
chr11 94533472 94533472 1 + A G LUSC 94533474 + 94533454 94533494 41 ACCCCCTGAGTATGGGGTAACGAGGTGATTATCAACTGCAG ACCCCCTGAGTATGGGGTGACGAGGTGATTATCAACTGCAG < 41bp 1 0.59739929278823 1 0.819646954536438 experiment 0.80520141442354 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94533474 chr11:94533472 synonymous SNV . 0 19 hm5C_associated_SNPs_28584 0 0 1 0 1 AMOTL1 chr11:94533477 5'GT 94533477 Upstream 6bp
chr12 53671319 53671319 1 + G A LUSC 53671316 + 53671296 53671336 41 GAGGAATTTGAAGTCAATGACCTGAACTATGAAGATAAACT GAGGAATTTGAAGTCAATGACCTAAACTATGAAGATAAACT < 41bp 1 0.0278174772384258 1 0.0790231227874756 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53671316 chr12:53671319 synonymous SNV . 0 24 hm5C_associated_SNPs_28586 0 0 1 0 1 ESPL1 chr12:53671392 5'GT 53671392 Upstream 74bp
chr15 73996319 73996319 1 + C G LUSC 73996337 + 73996317 73996357 41 GCCGTCAGCCTGCAGGTGGCCGGTGAGCACCAGGAGGGCGA GCGGTCAGCCTGCAGGTGGCCGGTGAGCACCAGGAGGGCGA < 41bp 1 0.464726311243303 1 0.414564043283463 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD276 ENSG00000103855 CDS Human protein_coding chr15:73996337 chr15:73996319 synonymous SNV . 0 3 hm5C_associated_SNPs_28589 0 0 0 0 1 CD276 chr15:73996338 5'GT 73996338 Upstream 20bp
chr19 10897272 10897272 1 + G T LUSC 10897279 + 10897259 10897299 41 GGGAGTCGCTGCCGGCCCTACGTAGCAAACTACAGAGCCAG GGGAGTCGCTGCCTGCCCTACGTAGCAAACTACAGAGCCAG < 41bp 1 0.171161846451224 1 0.266859412193298 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10897279 chr19:10897272 synonymous SNV . 0 14 hm5C_associated_SNPs_28590 0 0 1 0 1 DNM2 chr19:10897240 3'AG 10897240 Downstream 33bp
chr20 39744069 39744069 1 + A G LUSC 39744076 + 39744056 39744096 41 GATGATCTTTTTGATAGACTCAATGTGAGTAGATGAAGCAC GATGATCTTTTTGGTAGACTCAATGTGAGTAGATGAAGCAC < 41bp 1 0.524290130144396 1 0.460263162851334 experiment 0.951419739711209 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TOP1 ENSG00000198900 CDS Human protein_coding chr20:39744076 chr20:39744069 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_28591 0 0 1 0 2 TOP1 chr20:39744011 3'AG 39744011 Downstream 59bp
chr20 39744069 39744069 1 + A G LUSC 39744076 + 39744056 39744096 41 GATGATCTTTTTGATAGACTCAATGTGAGTAGATGAAGCAC GATGATCTTTTTGGTAGACTCAATGTGAGTAGATGAAGCAC < 41bp 1 0.524290130144396 1 0.460263162851334 experiment 0.951419739711209 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TOP1 ENSG00000198900 CDS Human protein_coding chr20:39744076 chr20:39744069 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_28591 0 0 1 0 2 TOP1 chr20:39744079 5'GT 39744079 Upstream 11bp
chr5 52978959 52978959 1 + G C LUSC 52978955 + 52978935 52978975 41 TTTTTCCTCCTAGGATGGAGCTATGACATTGAAGAGAGGAA TTTTTCCTCCTAGGATGGAGCTATCACATTGAAGAGAGGAA < 41bp 1 0.0795678168021876 1 0.176331400871277 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS4 ENSG00000164258 CDS Human protein_coding chr5:52978955 chr5:52978959 stoploss 0.922 2 25 hm5C_associated_SNPs_28592 0 0 1 0 1 NDUFS4 chr5:52978948 3'AG 52978948 Downstream 12bp
chr17 65735103 65735103 1 + G C LUSC 65735115 + 65735095 65735135 41 ATTTGAAAGACATCCCAGCACAGCATATCACGGTAAGTGTT ATTTGAAACACATCCCAGCACAGCATATCACGGTAAGTGTT < 41bp 1 0.780912897906605 1 0.342718005180359 experiment 0.43817420418679 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65735115 chr17:65735103 nonsynonymous SNV 0.999 3 9 hm5C_associated_SNPs_28595 0 0 1 0 2 NOL11 chr17:65735048 3'AG 65735048 Downstream 56bp
chr17 65735103 65735103 1 + G C LUSC 65735115 + 65735095 65735135 41 ATTTGAAAGACATCCCAGCACAGCATATCACGGTAAGTGTT ATTTGAAACACATCCCAGCACAGCATATCACGGTAAGTGTT < 41bp 1 0.780912897906605 1 0.342718005180359 experiment 0.43817420418679 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65735115 chr17:65735103 nonsynonymous SNV 0.999 3 9 hm5C_associated_SNPs_28595 0 0 1 0 2 NOL11 chr17:65735126 5'GT 65735126 Upstream 24bp
chr17 65735103 65735103 1 + G C LUSC 65735123 + 65735103 65735143 41 GACATCCCAGCACAGCATATCACGGTAAGTGTTCATACAAG CACATCCCAGCACAGCATATCACGGTAAGTGTTCATACAAG < 41bp 1 0.686120065054523 1 0.6334188580513 experiment 0.627759869890953 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65735123 chr17:65735103 nonsynonymous SNV 0.999 3 1 hm5C_associated_SNPs_28596 0 0 1 0 2 NOL11 chr17:65735048 3'AG 65735048 Downstream 56bp
chr17 65735103 65735103 1 + G C LUSC 65735123 + 65735103 65735143 41 GACATCCCAGCACAGCATATCACGGTAAGTGTTCATACAAG CACATCCCAGCACAGCATATCACGGTAAGTGTTCATACAAG < 41bp 1 0.686120065054523 1 0.6334188580513 experiment 0.627759869890953 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65735123 chr17:65735103 nonsynonymous SNV 0.999 3 1 hm5C_associated_SNPs_28596 0 0 1 0 2 NOL11 chr17:65735126 5'GT 65735126 Upstream 24bp
chr6 7393360 7393360 1 + G C LUSC 7393371 + 7393351 7393391 41 ACAGTCAAAGAGAAGGATGACATTCTGTTTGAAGACCTTCA ACAGTCAAACAGAAGGATGACATTCTGTTTGAAGACCTTCA < 41bp 1 0.072774966652208 1 0.0355271399021149 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7393371 chr6:7393360 nonsynonymous SNV 0.007 0 10 hm5C_associated_SNPs_28597 0 0 1 0 1 RIOK1 chr6:7393332 3'AG 7393332 Downstream 29bp
chr19 34949731 34949731 1 + G C LUSC 34949745 + 34949725 34949765 41 GCACTGGATCCTCCCAACCCCAATTGTTATGTATGTGCCAG GCACTGCATCCTCCCAACCCCAATTGTTATGTATGTGCCAG < 41bp 1 0.304657414233725 1 0.0678133964538574 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBA2 ENSG00000126261 CDS Human protein_coding chr19:34949745 chr19:34949731 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_28598 0 0 1 0 2 UBA2 chr19:34949674 3'AG 34949674 Downstream 58bp
chr19 34949731 34949731 1 + G C LUSC 34949745 + 34949725 34949765 41 GCACTGGATCCTCCCAACCCCAATTGTTATGTATGTGCCAG GCACTGCATCCTCCCAACCCCAATTGTTATGTATGTGCCAG < 41bp 1 0.304657414233725 1 0.0678133964538574 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBA2 ENSG00000126261 CDS Human protein_coding chr19:34949745 chr19:34949731 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_28598 0 0 1 0 2 UBA2 chr19:34949829 5'GT 34949829 Upstream 99bp
chr19 36216153 36216153 1 + G A LUSC 36216159 + 36216139 36216179 41 AACGTGTGGCTGATGGGGGGCCTGAGTGTGCTCACCTCTGT AACGTGTGGCTGATAGGGGGCCTGAGTGTGCTCACCTCTGT < 41bp 1 0.134310429294729 1 0.119138360023499 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216159 chr19:36216153 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_28599 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 33bp
chr19 36216153 36216153 1 + G A LUSC 36216159 + 36216139 36216179 41 AACGTGTGGCTGATGGGGGGCCTGAGTGTGCTCACCTCTGT AACGTGTGGCTGATAGGGGGCCTGAGTGTGCTCACCTCTGT < 41bp 1 0.134310429294729 1 0.119138360023499 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216159 chr19:36216153 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_28599 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 82bp
chr19 36216153 36216153 1 + G A LUSC 36216160 + 36216140 36216180 41 ACGTGTGGCTGATGGGGGGCCTGAGTGTGCTCACCTCTGTG ACGTGTGGCTGATAGGGGGCCTGAGTGTGCTCACCTCTGTG < 41bp 1 0.232509152390151 1 0.142841666936874 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216160 chr19:36216153 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_28600 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 33bp
chr19 36216153 36216153 1 + G A LUSC 36216160 + 36216140 36216180 41 ACGTGTGGCTGATGGGGGGCCTGAGTGTGCTCACCTCTGTG ACGTGTGGCTGATAGGGGGCCTGAGTGTGCTCACCTCTGTG < 41bp 1 0.232509152390151 1 0.142841666936874 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216160 chr19:36216153 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_28600 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 82bp
chr2 136396191 136396191 1 + C G LUSC 136396190 + 136396170 136396210 41 ATCTATTCTTTTTTCTAGTCCCTGTGTTCCCAAGAGAATTA ATCTATTCTTTTTTCTAGTCCGTGTGTTCCCAAGAGAATTA < 41bp 1 0.085136065867257 1 0.0871041715145111 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control R3HDM1 ENSG00000048991 CDS Human protein_coding chr2:136396190 chr2:136396191 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_28601 0 0 1 0 2 R3HDM1 chr2:136396188 3'AG 136396188 Downstream 4bp
chr2 136396191 136396191 1 + C G LUSC 136396190 + 136396170 136396210 41 ATCTATTCTTTTTTCTAGTCCCTGTGTTCCCAAGAGAATTA ATCTATTCTTTTTTCTAGTCCGTGTGTTCCCAAGAGAATTA < 41bp 1 0.085136065867257 1 0.0871041715145111 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control R3HDM1 ENSG00000048991 CDS Human protein_coding chr2:136396190 chr2:136396191 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_28601 0 0 1 0 2 R3HDM1 chr2:136396225 5'GT 136396225 Upstream 35bp
chr15 73007720 73007720 1 + C A LUSC 73007740 + 73007720 73007760 41 CCTCAAGCAGGTGGCCAGATCTTTGTGAGTATTGGCAACCT ACTCAAGCAGGTGGCCAGATCTTTGTGAGTATTGGCAACCT < 41bp 1 0.444164256771646 1 0.33273258805275 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BBS4 ENSG00000140463 CDS Human protein_coding chr15:73007740 chr15:73007720 nonsynonymous SNV 0.997 4 1 hm5C_associated_SNPs_28602 0 0 0 0 2 BBS4 chr15:73007632 3'AG 73007632 Downstream 89bp
chr15 73007720 73007720 1 + C A LUSC 73007740 + 73007720 73007760 41 CCTCAAGCAGGTGGCCAGATCTTTGTGAGTATTGGCAACCT ACTCAAGCAGGTGGCCAGATCTTTGTGAGTATTGGCAACCT < 41bp 1 0.444164256771646 1 0.33273258805275 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BBS4 ENSG00000140463 CDS Human protein_coding chr15:73007740 chr15:73007720 nonsynonymous SNV 0.997 4 1 hm5C_associated_SNPs_28602 0 0 0 0 2 BBS4 chr15:73007743 5'GT 73007743 Upstream 24bp
chr2 54871464 54871464 1 + G T LUSC 54871469 + 54871449 54871489 41 TTGTTTTCCAGGAAGGAATGCAGCTCATTTCAGAAAAGCCT TTGTTTTCCAGGAAGTAATGCAGCTCATTTCAGAAAAGCCT < 41bp 1 0.0481830515169937 1 0.439074069261551 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54871469 chr2:54871464 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_28603 0 0 1 0 1 SPTBN1 chr2:54871460 3'AG 54871460 Downstream 5bp
chr2 54871464 54871464 1 + G T LUSC 54871472 + 54871452 54871492 41 TTTTCCAGGAAGGAATGCAGCTCATTTCAGAAAAGCCTGAG TTTTCCAGGAAGTAATGCAGCTCATTTCAGAAAAGCCTGAG < 41bp 1 0.141498908815216 1 0.0479891002178192 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54871472 chr2:54871464 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_28604 0 0 1 0 1 SPTBN1 chr2:54871460 3'AG 54871460 Downstream 5bp
chr2 54871464 54871464 1 + G T LUSC 54871474 + 54871454 54871494 41 TTCCAGGAAGGAATGCAGCTCATTTCAGAAAAGCCTGAGAC TTCCAGGAAGTAATGCAGCTCATTTCAGAAAAGCCTGAGAC < 41bp 1 0.0230105218016672 1 0.047519326210022 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54871474 chr2:54871464 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_28605 0 0 1 0 1 SPTBN1 chr2:54871460 3'AG 54871460 Downstream 5bp
chr16 2106207 2106207 1 + C T LUSC 2106203 + 2106183 2106223 41 GGTGCTCCCTGCAGGATGATCTGTCTGCTGTGCGTCCGGAC GGTGCTCCCTGCAGGATGATCTGTTTGCTGTGCGTCCGGAC < 41bp 1 0.355265524059245 1 0.0615011155605316 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2106203 chr16:2106207 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_28606 0 0 1 0 2 TSC2 chr16:2106197 3'AG 2106197 Downstream 11bp
chr16 2106207 2106207 1 + C T LUSC 2106203 + 2106183 2106223 41 GGTGCTCCCTGCAGGATGATCTGTCTGCTGTGCGTCCGGAC GGTGCTCCCTGCAGGATGATCTGTTTGCTGTGCGTCCGGAC < 41bp 1 0.355265524059245 1 0.0615011155605316 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2106203 chr16:2106207 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_28606 0 0 1 0 2 TSC2 chr16:2106245 5'GT 2106245 Upstream 39bp
chr17 16342876 16342876 1 + A C LUSC 16342874 + 16342854 16342894 41 GAAGCGATAACTGACGACGTCTAATGTCTATCTGACCGCAG GAAGCGATAACTGACGACGTCTCATGTCTATCTGACCGCAG < 41bp 1 0.279823583939454 1 0.130376994609833 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342874 chr17:16342876 . . 0 23 hm5C_associated_SNPs_28607 0 0 1 0 1 LRRC75A-AS1;SNORD49B chr17:16342842 3'AG 16342842 Downstream 35bp
chr17 16342876 16342876 1 + A C LUSC 16342881 + 16342861 16342901 41 TAACTGACGACGTCTAATGTCTATCTGACCGCAGTCGCTGA TAACTGACGACGTCTCATGTCTATCTGACCGCAGTCGCTGA < 41bp 1 0.118118828459956 1 0.0679621696472168 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342881 chr17:16342876 . . 0 16 hm5C_associated_SNPs_28608 0 0 1 0 1 LRRC75A-AS1;SNORD49B chr17:16342842 3'AG 16342842 Downstream 35bp
chr1 162725039 162725039 1 + G T LUSC 162725020 + 162725000 162725040 41 CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCTA < 41bp 1 0.486319886767091 1 0.747806072235107 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162725020 chr1:162725039 nonsynonymous SNV 0.996 4 40 hm5C_associated_SNPs_28610 0 0 0 0 2 DDR2 chr1:162724946 3'AG 162724946 Downstream 94bp
chr1 162725039 162725039 1 + G T LUSC 162725020 + 162725000 162725040 41 CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCTA < 41bp 1 0.486319886767091 1 0.747806072235107 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162725020 chr1:162725039 nonsynonymous SNV 0.996 4 40 hm5C_associated_SNPs_28610 0 0 0 0 2 DDR2 chr1:162725093 5'GT 162725093 Upstream 55bp
chr1 874782 874782 1 + C A LUSC 874779 + 874759 874799 41 CAGCGCCTCTACCACCTGGGCCTCCCCAGCCACGGTGAGGA CAGCGCCTCTACCACCTGGGCCTACCCAGCCACGGTGAGGA < 41bp 1 0.064587247584402 1 0.0356760919094086 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874779 chr1:874782 synonymous SNV . 0 24 hm5C_associated_SNPs_28611 0 0 0 0 2 SAMD11 chr1:874792 5'GT 874792 Upstream 11bp
chr1 874782 874782 1 + C A LUSC 874779 + 874759 874799 41 CAGCGCCTCTACCACCTGGGCCTCCCCAGCCACGGTGAGGA CAGCGCCTCTACCACCTGGGCCTACCCAGCCACGGTGAGGA < 41bp 1 0.064587247584402 1 0.0356760919094086 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874779 chr1:874782 synonymous SNV . 0 24 hm5C_associated_SNPs_28611 0 0 0 0 2 SAMD11 chr1:874840 5'GT 874840 Upstream 59bp
chr3 119205770 119205770 1 + A T LUSC 119205764 + 119205744 119205784 41 GAATACACCAAAAACCAGGCCTGGAAATCTATGAAAGTAAT GAATACACCAAAAACCAGGCCTGGAATTCTATGAAAGTAAT < 41bp 1 0.654110429566307 1 0.162904053926468 experiment 0.691779140867386 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119205764 chr3:119205770 nonsynonymous SNV 0.994 4 27 hm5C_associated_SNPs_28612 0 0 1 4 2 POGLUT1 chr3:119205680 3'AG 119205680 Downstream 91bp
chr3 119205770 119205770 1 + A T LUSC 119205764 + 119205744 119205784 41 GAATACACCAAAAACCAGGCCTGGAAATCTATGAAAGTAAT GAATACACCAAAAACCAGGCCTGGAATTCTATGAAAGTAAT < 41bp 1 0.654110429566307 1 0.162904053926468 experiment 0.691779140867386 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119205764 chr3:119205770 nonsynonymous SNV 0.994 4 27 hm5C_associated_SNPs_28612 0 0 1 4 2 POGLUT1 chr3:119205779 5'GT 119205779 Upstream 10bp
chr7 142458536 142458536 1 + G T LUSC 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGTG < 41bp 1 0.0874669954492969 1 0.0400304198265076 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458536 nonsynonymous SNV 0.873 5 40 hm5C_associated_SNPs_28613 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 57bp
chr7 142458536 142458536 1 + G T LUSC 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGTG < 41bp 1 0.0874669954492969 1 0.0400304198265076 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458536 nonsynonymous SNV 0.873 5 40 hm5C_associated_SNPs_28613 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 30bp
chr7 142458536 142458536 1 + G T LUSC 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGTGT < 41bp 1 0.154554864039144 1 0.0420148372650146 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458536 nonsynonymous SNV 0.873 5 39 hm5C_associated_SNPs_28614 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 57bp
chr7 142458536 142458536 1 + G T LUSC 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGTGT < 41bp 1 0.154554864039144 1 0.0420148372650146 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458536 nonsynonymous SNV 0.873 5 39 hm5C_associated_SNPs_28614 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 30bp
chr7 142458536 142458536 1 + G T LUSC 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGTGTG < 41bp 1 0.352148283611243 1 0.188113927841187 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458536 nonsynonymous SNV 0.873 5 38 hm5C_associated_SNPs_28615 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 57bp
chr7 142458536 142458536 1 + G T LUSC 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGTGTG < 41bp 1 0.352148283611243 1 0.188113927841187 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458536 nonsynonymous SNV 0.873 5 38 hm5C_associated_SNPs_28615 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 30bp
chr7 142458536 142458536 1 + G T LUSC 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGTGTGGT < 41bp 1 0.44261292798582 1 0.671075105667114 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458536 nonsynonymous SNV 0.873 5 36 hm5C_associated_SNPs_28616 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 57bp
chr7 142458536 142458536 1 + G T LUSC 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGTGTGGT < 41bp 1 0.44261292798582 1 0.671075105667114 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458536 nonsynonymous SNV 0.873 5 36 hm5C_associated_SNPs_28616 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 30bp
chr7 142458536 142458536 1 + G T LUSC 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGGTGGCTCCCTCATCAACGAACAGTGTGTGGTATC < 41bp 1 0.718882971634278 1 0.772631525993347 experiment 0.562234056731444 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458536 nonsynonymous SNV 0.873 5 33 hm5C_associated_SNPs_28617 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 57bp
chr7 142458536 142458536 1 + G T LUSC 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGGTGGCTCCCTCATCAACGAACAGTGTGTGGTATC < 41bp 1 0.718882971634278 1 0.772631525993347 experiment 0.562234056731444 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458536 nonsynonymous SNV 0.873 5 33 hm5C_associated_SNPs_28617 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 30bp
chr7 142458536 142458536 1 + G T LUSC 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGCTCCCTCATCAACGAACAGTGTGTGGTATCAGC < 41bp 1 0.378751539515787 1 0.342386782169342 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458536 nonsynonymous SNV 0.873 5 30 hm5C_associated_SNPs_28618 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 57bp
chr7 142458536 142458536 1 + G T LUSC 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGCTCCCTCATCAACGAACAGTGTGTGGTATCAGC < 41bp 1 0.378751539515787 1 0.342386782169342 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458536 nonsynonymous SNV 0.873 5 30 hm5C_associated_SNPs_28618 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 30bp
chr7 142458536 142458536 1 + G T LUSC 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGCTCCCTCATCAACGAACAGTGTGTGGTATCAGCAGGC < 41bp 1 0.437285774365908 1 0.385057598352432 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458536 nonsynonymous SNV 0.873 5 26 hm5C_associated_SNPs_28619 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 57bp
chr7 142458536 142458536 1 + G T LUSC 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGCTCCCTCATCAACGAACAGTGTGTGGTATCAGCAGGC < 41bp 1 0.437285774365908 1 0.385057598352432 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458536 nonsynonymous SNV 0.873 5 26 hm5C_associated_SNPs_28619 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 30bp
chr7 142458536 142458536 1 + G T LUSC 142458547 + 142458527 142458567 41 CGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT CGAACAGTGTGTGGTATCAGCAGGCCACTGCTACAAGTCGT < 41bp 1 0.545230851238533 1 0.777710795402527 experiment 0.909538297522933 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458547 chr7:142458536 nonsynonymous SNV 0.873 5 10 hm5C_associated_SNPs_28620 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 57bp
chr7 142458536 142458536 1 + G T LUSC 142458547 + 142458527 142458567 41 CGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT CGAACAGTGTGTGGTATCAGCAGGCCACTGCTACAAGTCGT < 41bp 1 0.545230851238533 1 0.777710795402527 experiment 0.909538297522933 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458547 chr7:142458536 nonsynonymous SNV 0.873 5 10 hm5C_associated_SNPs_28620 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 30bp
chr7 142458536 142458536 1 + G T LUSC 142458551 + 142458531 142458571 41 CAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGT CAGTGTGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGT < 41bp 1 0.17643172060378 1 0.387425899505615 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458551 chr7:142458536 nonsynonymous SNV 0.873 5 6 hm5C_associated_SNPs_28621 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 57bp
chr7 142458536 142458536 1 + G T LUSC 142458551 + 142458531 142458571 41 CAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGT CAGTGTGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGT < 41bp 1 0.17643172060378 1 0.387425899505615 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458551 chr7:142458536 nonsynonymous SNV 0.873 5 6 hm5C_associated_SNPs_28621 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 30bp
chr7 142458536 142458536 1 + G T LUSC 142458552 + 142458532 142458572 41 AGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTG AGTGTGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTG < 41bp 1 0.389807149480651 1 0.196201354265213 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458552 chr7:142458536 nonsynonymous SNV 0.873 5 5 hm5C_associated_SNPs_28622 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 57bp
chr7 142458536 142458536 1 + G T LUSC 142458552 + 142458532 142458572 41 AGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTG AGTGTGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTG < 41bp 1 0.389807149480651 1 0.196201354265213 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458552 chr7:142458536 nonsynonymous SNV 0.873 5 5 hm5C_associated_SNPs_28622 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 30bp
chr7 142458536 142458536 1 + G T LUSC 142458554 + 142458534 142458574 41 TGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTG TGTGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTG < 41bp 1 0.33243743005568 1 0.110515981912613 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458554 chr7:142458536 nonsynonymous SNV 0.873 5 3 hm5C_associated_SNPs_28623 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 57bp
chr7 142458536 142458536 1 + G T LUSC 142458554 + 142458534 142458574 41 TGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTG TGTGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTG < 41bp 1 0.33243743005568 1 0.110515981912613 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458554 chr7:142458536 nonsynonymous SNV 0.873 5 3 hm5C_associated_SNPs_28623 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 30bp
chr10 103917285 103917285 1 + G C LUSC 103917292 + 103917272 103917312 41 ATGATGATGATGAGGAGGACCAAAAGAAACAGCCTGTCCAG ATGATGATGATGACGAGGACCAAAAGAAACAGCCTGTCCAG < 41bp 1 0.76922215781235 1 0.423657417297363 experiment 0.4615556843753 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103917292 chr10:103917285 nonsynonymous SNV 0.688 1 14 hm5C_associated_SNPs_28624 0 0 1 0 3 NOLC1 chr10:103917188 3'AG 103917188 Downstream 98bp
chr10 103917285 103917285 1 + G C LUSC 103917292 + 103917272 103917312 41 ATGATGATGATGAGGAGGACCAAAAGAAACAGCCTGTCCAG ATGATGATGATGACGAGGACCAAAAGAAACAGCCTGTCCAG < 41bp 1 0.76922215781235 1 0.423657417297363 experiment 0.4615556843753 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103917292 chr10:103917285 nonsynonymous SNV 0.688 1 14 hm5C_associated_SNPs_28624 0 0 1 0 3 NOLC1 chr10:103917206 3'AG 103917206 Downstream 80bp
chr10 103917285 103917285 1 + G C LUSC 103917292 + 103917272 103917312 41 ATGATGATGATGAGGAGGACCAAAAGAAACAGCCTGTCCAG ATGATGATGATGACGAGGACCAAAAGAAACAGCCTGTCCAG < 41bp 1 0.76922215781235 1 0.423657417297363 experiment 0.4615556843753 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103917292 chr10:103917285 nonsynonymous SNV 0.688 1 14 hm5C_associated_SNPs_28624 0 0 1 0 3 NOLC1 chr10:103917312 5'GT 103917312 Upstream 28bp
chr17 73727999 73727999 1 + C A LUSC 73727993 + 73727973 73728013 41 CAACATCCATCTGAAACCTTCCTTCTCCGACGGCCTCAAGA CAACATCCATCTGAAACCTTCCTTCTACGACGGCCTCAAGA < 41bp 1 0.00723901764182868 1 0.0369027853012085 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73727993 chr17:73727999 nonsynonymous SNV 0.792 4 27 hm5C_associated_SNPs_28625 0 0 0 0 1 ITGB4 chr17:73728054 5'GT 73728054 Upstream 56bp
chr1 7796554 7796554 1 + G T LUSC 7796544 + 7796524 7796564 41 TTCCGCGGAATGACCCTACTCCACCTGGCCGCTGCCCAGGG TTCCGCGGAATGACCCTACTCCACCTGGCCTCTGCCCAGGG < 41bp 1 0.264112894143446 1 0.146364569664001 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMTA1 ENSG00000171735 CDS Human protein_coding chr1:7796544 chr1:7796554 nonsynonymous SNV 0.990 4 31 hm5C_associated_SNPs_28627 0 0 1 0 1 CAMTA1 chr1:7796600 5'GT 7796600 Upstream 47bp
chr2 191795202 191795202 1 + C G LUSC 191795198 + 191795178 191795218 41 AAATCTGGAGTTGCTGGGGGCATTCTTTTAGTTGTCCCCAA AAATCTGGAGTTGCTGGGGGCATTGTTTTAGTTGTCCCCAA < 41bp 1 0.174605750051513 1 0.121117770671844 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GLS ENSG00000115419 CDS Human protein_coding chr2:191795198 chr2:191795202 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_28628 0 0 1 0 2 GLS chr2:191795163 3'AG 191795163 Downstream 40bp
chr2 191795202 191795202 1 + C G LUSC 191795198 + 191795178 191795218 41 AAATCTGGAGTTGCTGGGGGCATTCTTTTAGTTGTCCCCAA AAATCTGGAGTTGCTGGGGGCATTGTTTTAGTTGTCCCCAA < 41bp 1 0.174605750051513 1 0.121117770671844 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GLS ENSG00000115419 CDS Human protein_coding chr2:191795198 chr2:191795202 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_28628 0 0 1 0 2 GLS chr2:191795294 5'GT 191795294 Upstream 93bp
chr18 34289066 34289066 1 + G T LUSC 34289065 + 34289045 34289085 41 TTGTCTCCACCAGCAAGTGCCGGGGATCCTGAACCCGAATC TTGTCTCCACCAGCAAGTGCCTGGGATCCTGAACCCGAATC < 41bp 1 0.541312005544165 1 0.49390920996666 experiment 0.917375988911669 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34289065 chr18:34289066 nonsynonymous SNV 0.004 2 22 hm5C_associated_SNPs_28630 0 0 0 0 1 FHOD3 chr18:34289058 3'AG 34289058 Downstream 9bp
chr19 50753939 50753939 1 + G T LUSC 50753921 + 50753901 50753941 41 CTGCGGGATCAGGCCGACTTCAGTGTTCTCCACTACGCGGG CTGCGGGATCAGGCCGACTTCAGTGTTCTCCACTACGCTGG < 41bp 1 0.672016397670016 1 0.52364456653595 experiment 0.655967204659968 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50753921 chr19:50753939 synonymous SNV . 0 39 hm5C_associated_SNPs_28631 0 0 0 0 1 MYH14 chr19:50753945 5'GT 50753945 Upstream 7bp
chr12 6979488 6979488 1 + C T LUSC 6979504 + 6979484 6979524 41 CTTCCTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGG CTTCTTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGG < 41bp 1 0.122933028793337 1 0.0329270362854004 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979504 chr12:6979488 nonsynonymous SNV 0.981 2 5 hm5C_associated_SNPs_28632 0 0 1 0 1 TPI1 chr12:6979429 3'AG 6979429 Downstream 60bp
chr12 6979488 6979488 1 + C T LUSC 6979508 + 6979488 6979528 41 CTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGGACAT TTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGGACAT < 41bp 1 0.609196157497091 1 0.831946909427643 experiment 0.781607685005818 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979508 chr12:6979488 nonsynonymous SNV 0.981 2 1 hm5C_associated_SNPs_28633 0 0 1 0 1 TPI1 chr12:6979429 3'AG 6979429 Downstream 60bp
chr11 9530358 9530358 1 + A C LUSC 9530377 + 9530357 9530397 41 GAGGAGGAGCAGGAAGCCTTCTTTGAGCCGCCCCCAGGTGA GCGGAGGAGCAGGAAGCCTTCTTTGAGCCGCCCCCAGGTGA < 41bp 1 0.472472186868154 1 0.0795351564884186 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9530377 chr11:9530358 nonsynonymous SNV 0.999 4 2 hm5C_associated_SNPs_28634 0 0 0 0 1 ZNF143 chr11:9530393 5'GT 9530393 Upstream 36bp
chr10 71158372 71158372 1 + G A LUSC 71158355 + 71158335 71158375 41 CTCTTGTCCCCCACAGTGACCGATTAGCACTGCTCCAGGTC CTCTTGTCCCCCACAGTGACCGATTAGCACTGCTCCAAGTC < 41bp 1 0.148314138985733 1 0.0373712778091431 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HK1 ENSG00000156515 CDS Human protein_coding chr10:71158355 chr10:71158372 synonymous SNV . 0 38 hm5C_associated_SNPs_28635 0 0 1 0 1 HK1 chr10:71158351 3'AG 71158351 Downstream 22bp
chr20 3520918 3520918 1 + A T LUSC 3520926 + 3520906 3520946 41 GCTACAGAGTGTAGTTGGGACCATTTATATGTTTATGATGG GCTACAGAGTGTTGTTGGGACCATTTATATGTTTATGATGG < 41bp 1 0.0237424763107944 1 0.088699072599411 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATRN ENSG00000088812 CDS Human protein_coding chr20:3520926 chr20:3520918 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_28636 0 0 1 0 2 ATRN chr20:3520869 3'AG 3520869 Downstream 50bp
chr20 3520918 3520918 1 + A T LUSC 3520926 + 3520906 3520946 41 GCTACAGAGTGTAGTTGGGACCATTTATATGTTTATGATGG GCTACAGAGTGTTGTTGGGACCATTTATATGTTTATGATGG < 41bp 1 0.0237424763107944 1 0.088699072599411 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATRN ENSG00000088812 CDS Human protein_coding chr20:3520926 chr20:3520918 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_28636 0 0 1 0 2 ATRN chr20:3520982 5'GT 3520982 Upstream 65bp
chr16 460303 460303 1 + T A LUSC 460313 + 460293 460333 41 TTCAAGACCGTGATGGACATCGATACCAGCGGCACCTTCAA TTCAAGACCGAGATGGACATCGATACCAGCGGCACCTTCAA < 41bp 1 0.531958634688005 1 0.405347406864166 experiment 0.936082730623991 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DECR2 ENSG00000242612 CDS Human protein_coding chr16:460313 chr16:460303 nonsynonymous SNV 0.919 4 11 hm5C_associated_SNPs_28637 0 0 1 0 2 DECR2 chr16:460243 3'AG 460243 Downstream 61bp
chr16 460303 460303 1 + T A LUSC 460313 + 460293 460333 41 TTCAAGACCGTGATGGACATCGATACCAGCGGCACCTTCAA TTCAAGACCGAGATGGACATCGATACCAGCGGCACCTTCAA < 41bp 1 0.531958634688005 1 0.405347406864166 experiment 0.936082730623991 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DECR2 ENSG00000242612 CDS Human protein_coding chr16:460313 chr16:460303 nonsynonymous SNV 0.919 4 11 hm5C_associated_SNPs_28637 0 0 1 0 2 DECR2 chr16:460367 5'GT 460367 Upstream 65bp
chr7 90226026 90226026 1 + C A LUSC 90226022 + 90226002 90226042 41 AGAACTTTGTCGGAGAGTTTCAGTCGCATTGGTGAGTAGCG AGAACTTTGTCGGAGAGTTTCAGTAGCATTGGTGAGTAGCG < 41bp 1 0.523781100637851 1 0.42452135682106 experiment 0.952437798724297 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90226022 chr7:90226026 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_28638 0 0 0 0 1 CDK14 chr7:90226032 5'GT 90226032 Upstream 7bp
chr1 228362651 228362651 1 + C G LUSC 228362665 + 228362645 228362685 41 CCTCACCCAGGATGAAGGCCCAGCCCTGGTGCCCGGGGGCC CCTCACGCAGGATGAAGGCCCAGCCCTGGTGCCCGGGGGCC < 41bp 1 0.508095757987838 1 0.220157712697983 experiment 0.983808484024324 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IBA57 ENSG00000181873 CDS Human protein_coding chr1:228362665 chr1:228362651 synonymous SNV . 0 7 hm5C_associated_SNPs_28642 0 0 1 0 1 IBA57 chr1:228362730 5'GT 228362730 Upstream 80bp
chr1 32502597 32502597 1 + G T LUSC 32502589 + 32502569 32502609 41 TACCTGAACCCTCTCGTGGACGTGGGGTGCCAGTGAGAGGC TACCTGAACCCTCTCGTGGACGTGGGGTTCCAGTGAGAGGC < 41bp 1 0.757256407463748 1 0.50188273191452 experiment 0.485487185072503 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502589 chr1:32502597 synonymous SNV . 0 29 hm5C_associated_SNPs_28648 0 0 1 0 2 KHDRBS1 chr1:32502511 3'AG 32502511 Downstream 87bp
chr1 32502597 32502597 1 + G T LUSC 32502589 + 32502569 32502609 41 TACCTGAACCCTCTCGTGGACGTGGGGTGCCAGTGAGAGGC TACCTGAACCCTCTCGTGGACGTGGGGTTCCAGTGAGAGGC < 41bp 1 0.757256407463748 1 0.50188273191452 experiment 0.485487185072503 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502589 chr1:32502597 synonymous SNV . 0 29 hm5C_associated_SNPs_28648 0 0 1 0 2 KHDRBS1 chr1:32502644 5'GT 32502644 Upstream 48bp
chr1 32502597 32502597 1 + G T LUSC 32502598 + 32502578 32502618 41 CCTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCT CCTCTCGTGGACGTGGGGTTCCAGTGAGAGGCCGGGGAGCT < 41bp 1 0.67693091450939 1 0.548099279403687 experiment 0.64613817098122 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502598 chr1:32502597 synonymous SNV . 0 20 hm5C_associated_SNPs_28649 0 0 1 0 2 KHDRBS1 chr1:32502511 3'AG 32502511 Downstream 87bp
chr1 32502597 32502597 1 + G T LUSC 32502598 + 32502578 32502618 41 CCTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCT CCTCTCGTGGACGTGGGGTTCCAGTGAGAGGCCGGGGAGCT < 41bp 1 0.67693091450939 1 0.548099279403687 experiment 0.64613817098122 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502598 chr1:32502597 synonymous SNV . 0 20 hm5C_associated_SNPs_28649 0 0 1 0 2 KHDRBS1 chr1:32502644 5'GT 32502644 Upstream 48bp
chr15 59348032 59348032 1 + G A LUSC 59348026 + 59348006 59348046 41 ATGCAGCAGAAGTTGTGGACCTTACCGTTGATGAAGATGGT ATGCAGCAGAAGTTGTGGACCTTACCATTGATGAAGATGGT < 41bp 1 0.0376244002108969 1 0.097503274679184 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF111 ENSG00000157450 CDS Human protein_coding chr15:59348026 chr15:59348032 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_28650 0 0 0 0 1 RNF111 chr15:59348044 5'GT 59348044 Upstream 13bp
chr5 176520503 176520503 1 + G A LUSC 176520483 + 176520463 176520503 41 GCGTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCCGGCCTCG GCGTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCCGGCCTCA < 41bp 1 0.134215696231834 1 0.0573561489582062 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGFR4;FGFR4 ENSG00000160867;ENSG00000160867 exonic;splicing Human protein_coding chr5:176520483 chr5:176520503 nonsynonymous SNV 0.485 2 41 hm5C_associated_SNPs_28651 0 0 1 0 2 FGFR4 chr5:176520407 3'AG 176520407 Downstream 97bp
chr5 176520503 176520503 1 + G A LUSC 176520483 + 176520463 176520503 41 GCGTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCCGGCCTCG GCGTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCCGGCCTCA < 41bp 1 0.134215696231834 1 0.0573561489582062 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGFR4;FGFR4 ENSG00000160867;ENSG00000160867 exonic;splicing Human protein_coding chr5:176520483 chr5:176520503 nonsynonymous SNV 0.485 2 41 hm5C_associated_SNPs_28651 0 0 1 0 2 FGFR4 chr5:176520552 5'GT 176520552 Upstream 50bp
chr20 30386278 30386278 1 + G T LUSC 30386297 + 30386277 30386317 41 AGCCCAGCAGTTGGAGGAGGCCAGACTACAGGAGGAAGAGC ATCCCAGCAGTTGGAGGAGGCCAGACTACAGGAGGAAGAGC < 41bp 1 0.514221040155011 1 0.296442687511444 experiment 0.971557919689979 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30386297 chr20:30386278 nonsynonymous SNV 0.970 0 2 hm5C_associated_SNPs_28653 0 0 1 0 1 TPX2 chr20:30386355 5'GT 30386355 Upstream 78bp
chr22 31266612 31266612 1 + G T LUSC 31266632 + 31266612 31266652 41 GAAGGTGGTGAATGAGCGGGCCACCCTCTTCCGCATCACAT TAAGGTGGTGAATGAGCGGGCCACCCTCTTCCGCATCACAT < 41bp 1 0.0387987017831239 1 0.0956145226955414 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OSBP2 ENSG00000184792 CDS Human protein_coding chr22:31266632 chr22:31266612 synonymous SNV . 0 1 hm5C_associated_SNPs_28654 0 0 0 0 1 OSBP2 chr22:31266669 5'GT 31266669 Upstream 58bp
chr12 109536308 109536308 1 + C A LUSC 109536312 + 109536292 109536332 41 CCTCGCCGCTGAGTGCCGAGCAGTTGGACCGGATCCAGAGG CCTCGCCGCTGAGTGCAGAGCAGTTGGACCGGATCCAGAGG < 41bp 1 0.558141235128809 1 0.524835407733917 experiment 0.883717529742382 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109536312 chr12:109536308 synonymous SNV . 0 17 hm5C_associated_SNPs_28655 0 0 1 0 1 UNG chr12:109536237 3'AG 109536237 Downstream 72bp
chr16 67006829 67006829 1 + A T LUSC 67006809 + 67006789 67006829 41 CCCAATTCAACCAGGCGGAACAATATCTGGAGATCAACCCA CCCAATTCAACCAGGCGGAACAATATCTGGAGATCAACCCT < 41bp 1 0.241568813585748 1 0.228232890367508 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:67006809 chr16:67006829 synonymous SNV . 0 41 hm5C_associated_SNPs_28656 0 0 1 0 1 CES3 chr16:67006757 3'AG 67006757 Downstream 73bp
chr19 6833257 6833257 1 + A T LUSC 6833263 + 6833243 6833283 41 GATGTTCTCCTTTGAGGAGACCACATCCTGCAAGGCCTGTC GATGTTCTCCTTTGTGGAGACCACATCCTGCAAGGCCTGTC < 41bp 1 0.427460481218275 1 0.14230027794838 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VAV1 ENSG00000141968 CDS Human protein_coding chr19:6833263 chr19:6833257 nonsynonymous SNV 0.993 3 15 hm5C_associated_SNPs_28657 0 0 0 0 2 VAV1 chr19:6833195 3'AG 6833195 Downstream 63bp
chr19 6833257 6833257 1 + A T LUSC 6833263 + 6833243 6833283 41 GATGTTCTCCTTTGAGGAGACCACATCCTGCAAGGCCTGTC GATGTTCTCCTTTGTGGAGACCACATCCTGCAAGGCCTGTC < 41bp 1 0.427460481218275 1 0.14230027794838 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VAV1 ENSG00000141968 CDS Human protein_coding chr19:6833263 chr19:6833257 nonsynonymous SNV 0.993 3 15 hm5C_associated_SNPs_28657 0 0 0 0 2 VAV1 chr19:6833296 5'GT 6833296 Upstream 40bp
chr18 74625758 74625758 1 + C T LUSC 74625764 + 74625744 74625784 41 TGAAGCAGCATGTGCGGTCGCACACCGGGGAAAAGCCCTAC TGAAGCAGCATGTGTGGTCGCACACCGGGGAAAAGCCCTAC < 41bp 1 0.323403509747822 1 0.109749108552933 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74625764 chr18:74625758 nonsynonymous SNV 0.873 4 15 hm5C_associated_SNPs_28658 0 0 0 0 2 ZNF236 chr18:74625703 3'AG 74625703 Downstream 56bp
chr18 74625758 74625758 1 + C T LUSC 74625764 + 74625744 74625784 41 TGAAGCAGCATGTGCGGTCGCACACCGGGGAAAAGCCCTAC TGAAGCAGCATGTGTGGTCGCACACCGGGGAAAAGCCCTAC < 41bp 1 0.323403509747822 1 0.109749108552933 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74625764 chr18:74625758 nonsynonymous SNV 0.873 4 15 hm5C_associated_SNPs_28658 0 0 0 0 2 ZNF236 chr18:74625854 5'GT 74625854 Upstream 97bp
chr20 57480498 57480498 1 + C T LUSC 57480488 + 57480468 57480508 41 GAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA GAGGATGAAGGAGTGCGTGCCTGCTACGAATGCTCCAACGA < 41bp 1 0.452736541775193 1 0.319553405046463 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480488 chr20:57480498 nonsynonymous SNV 0.986 5 31 hm5C_associated_SNPs_28661 1 0 1 0 2 GNAS chr20:57480438 3'AG 57480438 Downstream 61bp
chr20 57480498 57480498 1 + C T LUSC 57480488 + 57480468 57480508 41 GAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA GAGGATGAAGGAGTGCGTGCCTGCTACGAATGCTCCAACGA < 41bp 1 0.452736541775193 1 0.319553405046463 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480488 chr20:57480498 nonsynonymous SNV 0.986 5 31 hm5C_associated_SNPs_28661 1 0 1 0 2 GNAS chr20:57480535 5'GT 57480535 Upstream 38bp
chr20 57480498 57480498 1 + C T LUSC 57480512 + 57480492 57480532 41 TACGAACGCTCCAACGAGTACCAGCTGATTGACTGTGCCCA TACGAATGCTCCAACGAGTACCAGCTGATTGACTGTGCCCA < 41bp 1 0.141494980955494 1 0.0771267414093018 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480512 chr20:57480498 nonsynonymous SNV 0.986 5 7 hm5C_associated_SNPs_28662 1 0 1 0 2 GNAS chr20:57480438 3'AG 57480438 Downstream 61bp
chr20 57480498 57480498 1 + C T LUSC 57480512 + 57480492 57480532 41 TACGAACGCTCCAACGAGTACCAGCTGATTGACTGTGCCCA TACGAATGCTCCAACGAGTACCAGCTGATTGACTGTGCCCA < 41bp 1 0.141494980955494 1 0.0771267414093018 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480512 chr20:57480498 nonsynonymous SNV 0.986 5 7 hm5C_associated_SNPs_28662 1 0 1 0 2 GNAS chr20:57480535 5'GT 57480535 Upstream 38bp
chr12 120878332 120878332 1 + G C LUSC 120878328 + 120878308 120878348 41 AATCCACTTCCAACTGGCTACGAAGATGAATAAAGAGAATC AATCCACTTCCAACTGGCTACGAACATGAATAAAGAGAATC < 41bp 1 0.165315584425354 1 0.143697202205658 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COX6A1 ENSG00000111775 CDS Human protein_coding chr12:120878328 chr12:120878332 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_28664 0 0 1 0 1 COX6A1 chr12:120878257 3'AG 120878257 Downstream 76bp
chr6 31713065 31713065 1 + C T LUSC 31713049 + 31713029 31713069 41 TAAGAGTGAGTCTCACCCCTCAGTGTACAAAGTGGCCAGTG TAAGAGTGAGTCTCACCCCTCAGTGTACAAAGTGGCTAGTG < 41bp 1 0.345707884096085 1 0.518393158912659 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MSH5 ENSG00000204410;ENSG00000255152 CDS Human other chr6:31713049 chr6:31713065 synonymous SNV . 0 37 hm5C_associated_SNPs_28665 0 0 1 0 1 MSH5 chr6:31713096 5'GT 31713096 Upstream 32bp
chr5 118877679 118877679 1 + C G LUSC 118877694 + 118877674 118877714 41 CTACGCCAAGCTCTGAAGGGCACACTACACTATTAATAAAA CTACGGCAAGCTCTGAAGGGCACACTACACTATTAATAAAA < 41bp 1 0.177243877590375 1 0.0844927430152893 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118877694 chr5:118877679 nonsynonymous SNV 0.996 2 6 hm5C_associated_SNPs_28667 0 0 1 0 1 HSD17B4 chr5:118877600 3'AG 118877600 Downstream 80bp
chr9 100405529 100405529 1 + G C LUSC 100405545 + 100405525 100405565 41 ATTAGTTGGACTACTGAATGCCAGGAATTACAATTTTGGTG ATTACTTGGACTACTGAATGCCAGGAATTACAATTTTGGTG < 41bp 1 0.307135173959362 1 0.496228754520416 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100405545 chr9:100405529 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_28668 0 0 1 0 1 NCBP1 chr9:100405486 3'AG 100405486 Downstream 44bp
chr22 35719874 35719874 1 + C T LUSC 35719884 + 35719864 35719904 41 CCATACTCTCCGGTGACACGCCCATAGCACCAACCCCGGAA CCATACTCTCTGGTGACACGCCCATAGCACCAACCCCGGAA < 41bp 1 0.179890655690355 1 0.117949515581131 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOM1 ENSG00000100284 CDS Human protein_coding chr22:35719884 chr22:35719874 synonymous SNV 0.002 0 11 hm5C_associated_SNPs_28669 0 0 1 0 1 TOM1 chr22:35719907 5'GT 35719907 Upstream 34bp
chr7 100210419 100210419 1 + G C LUSC 100210428 + 100210408 100210448 41 AGCCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGG AGCCTGCATGCCCCGTGGGGCGCCCCAGGACCAGGAGCTGG < 41bp 1 0.370745674776147 1 0.112857669591904 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210428 chr7:100210419 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_28670 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 67bp
chr7 100210419 100210419 1 + G C LUSC 100210430 + 100210410 100210450 41 CCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTG CCTGCATGCCCCGTGGGGCGCCCCAGGACCAGGAGCTGGTG < 41bp 1 0.681796574793726 1 0.111792385578156 experiment 0.636406850412548 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210430 chr7:100210419 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_28671 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 67bp
chr7 100210419 100210419 1 + G C LUSC 100210431 + 100210411 100210451 41 CTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGG CTGCATGCCCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGG < 41bp 1 0.452907752797444 1 0.765119612216949 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210431 chr7:100210419 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_28672 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 67bp
chr7 100210419 100210419 1 + G C LUSC 100210432 + 100210412 100210452 41 TGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGGG TGCATGCCCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGGG < 41bp 1 0.538803100226406 1 0.78532999753952 experiment 0.922393799547188 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210432 chr7:100210419 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_28673 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 67bp
chr2 211502545 211502545 1 + A T LUSC 211502553 + 211502533 211502573 41 GGTTAAAGAAAAACATCCACCCTTGGGTTAAACAGGTAAAG GGTTAAAGAAAATCATCCACCCTTGGGTTAAACAGGTAAAG < 41bp 1 0.0546275082007496 1 0.17290398478508 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211502553 chr2:211502545 nonsynonymous SNV 0.999 3 13 hm5C_associated_SNPs_28674 0 0 0 0 1 CPS1 chr2:211502567 5'GT 211502567 Upstream 23bp
chr16 82891990 82891990 1 + A G LUSC 82891983 + 82891963 82892003 41 TCAGGTGCTGCTGCTAACATCTGCAGAAGATTTGGACTGCA TCAGGTGCTGCTGCTAACATCTGCAGAGGATTTGGACTGCA < 41bp 1 0.595043870559693 1 0.805320620536804 experiment 0.809912258880614 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:82891983 chr16:82891990 synonymous SNV . 0 28 hm5C_associated_SNPs_28675 0 0 0 0 2 CDH13 chr16:82891967 3'AG 82891967 Downstream 24bp
chr16 82891990 82891990 1 + A G LUSC 82891983 + 82891963 82892003 41 TCAGGTGCTGCTGCTAACATCTGCAGAAGATTTGGACTGCA TCAGGTGCTGCTGCTAACATCTGCAGAGGATTTGGACTGCA < 41bp 1 0.595043870559693 1 0.805320620536804 experiment 0.809912258880614 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:82891983 chr16:82891990 synonymous SNV . 0 28 hm5C_associated_SNPs_28675 0 0 0 0 2 CDH13 chr16:82892078 5'GT 82892078 Upstream 89bp
chr2 233704599 233704599 1 + C T LUSC 233704582 + 233704562 233704602 41 CCTTCTTCTTCAACGTGGGGCCAGCAGTCCAATACAACAGC CCTTCTTCTTCAACGTGGGGCCAGCAGTCCAATACAATAGC < 41bp 1 0.0497481170286036 1 0.213628321886063 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233704582 chr2:233704599 nonsynonymous SNV 0.991 0 38 hm5C_associated_SNPs_28682 0 0 1 0 2 GIGYF2 chr2:233704559 3'AG 233704559 Downstream 41bp
chr2 233704599 233704599 1 + C T LUSC 233704582 + 233704562 233704602 41 CCTTCTTCTTCAACGTGGGGCCAGCAGTCCAATACAACAGC CCTTCTTCTTCAACGTGGGGCCAGCAGTCCAATACAATAGC < 41bp 1 0.0497481170286036 1 0.213628321886063 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233704582 chr2:233704599 nonsynonymous SNV 0.991 0 38 hm5C_associated_SNPs_28682 0 0 1 0 2 GIGYF2 chr2:233704681 5'GT 233704681 Upstream 83bp
chr2 233704599 233704599 1 + C T LUSC 233704586 + 233704566 233704606 41 CTTCTTCAACGTGGGGCCAGCAGTCCAATACAACAGCATGT CTTCTTCAACGTGGGGCCAGCAGTCCAATACAATAGCATGT < 41bp 1 0.102789441206996 1 0.609280407428741 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233704586 chr2:233704599 nonsynonymous SNV 0.991 0 34 hm5C_associated_SNPs_28683 0 0 1 0 2 GIGYF2 chr2:233704559 3'AG 233704559 Downstream 41bp
chr2 233704599 233704599 1 + C T LUSC 233704586 + 233704566 233704606 41 CTTCTTCAACGTGGGGCCAGCAGTCCAATACAACAGCATGT CTTCTTCAACGTGGGGCCAGCAGTCCAATACAATAGCATGT < 41bp 1 0.102789441206996 1 0.609280407428741 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233704586 chr2:233704599 nonsynonymous SNV 0.991 0 34 hm5C_associated_SNPs_28683 0 0 1 0 2 GIGYF2 chr2:233704681 5'GT 233704681 Upstream 83bp
chr10 118314942 118314942 1 + C G LUSC 118314925 + 118314905 118314945 41 GGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTTTCCAAA GGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTTTCGAAA < 41bp 1 0.106256521535217 1 0.0621080100536346 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314925 chr10:118314942 nonsynonymous SNV 1.000 5 38 hm5C_associated_SNPs_28684 0 0 0 0 1 PNLIP chr10:118315019 5'GT 118315019 Upstream 78bp
chr21 42629177 42629177 1 + C T LUSC 42629163 + 42629143 42629183 41 TTTCCCCATCCACAAATGCGCTGGTGATCGGTGCCACGGTG TTTCCCCATCCACAAATGCGCTGGTGATCGGTGCTACGGTG < 41bp 1 0.53285287426216 1 0.113607376813889 experiment 0.934294251475679 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BACE2 ENSG00000182240 CDS Human protein_coding chr21:42629163 chr21:42629177 synonymous SNV . 0 35 hm5C_associated_SNPs_28685 0 0 1 0 2 BACE2 chr21:42629085 3'AG 42629085 Downstream 93bp
chr21 42629177 42629177 1 + C T LUSC 42629163 + 42629143 42629183 41 TTTCCCCATCCACAAATGCGCTGGTGATCGGTGCCACGGTG TTTCCCCATCCACAAATGCGCTGGTGATCGGTGCTACGGTG < 41bp 1 0.53285287426216 1 0.113607376813889 experiment 0.934294251475679 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BACE2 ENSG00000182240 CDS Human protein_coding chr21:42629163 chr21:42629177 synonymous SNV . 0 35 hm5C_associated_SNPs_28685 0 0 1 0 2 BACE2 chr21:42629253 5'GT 42629253 Upstream 77bp
chr16 601556 601556 1 + G A LUSC 601540 + 601520 601560 41 GGCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGC GGCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAACGACAGC < 41bp 1 0.0240060889901214 1 0.0508137047290802 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601540 chr16:601556 nonsynonymous SNV 0.988 5 37 hm5C_associated_SNPs_28686 0 0 1 0 1 CAPN15 chr16:601512 3'AG 601512 Downstream 45bp
chr16 601556 601556 1 + G A LUSC 601547 + 601527 601567 41 AAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGCTGGTCCG AAACCCGTGGGGCCGTTTCTCCTGGAACGACAGCTGGTCCG < 41bp 1 0.483540520042573 1 0.80096709728241 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601547 chr16:601556 nonsynonymous SNV 0.988 5 30 hm5C_associated_SNPs_28687 0 0 1 0 1 CAPN15 chr16:601512 3'AG 601512 Downstream 45bp
chr10 75557803 75557803 1 + T C LUSC 75557805 + 75557785 75557825 41 CTGGCTCTCACGTACTTATTCTTCCCACGTTTCCTGGATTA CTGGCTCTCACGTACTTACTCTTCCCACGTTTCCTGGATTA < 41bp 1 0.11351707015939 1 0.207676887512207 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75557805 chr10:75557803 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_28688 0 0 1 0 1 ZSWIM8 chr10:75557828 5'GT 75557828 Upstream 26bp
chr7 94917905 94917905 1 + G A LUSC 94917917 + 94917897 94917937 41 CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA CCGTTCAGAAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA < 41bp 1 0.502760510122826 1 0.163000345230103 experiment 0.994478979754348 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917917 chr7:94917905 nonsynonymous SNV 0.459 3 9 hm5C_associated_SNPs_28690 0 0 1 0 1 PPP1R9A chr7:94917848 3'AG 94917848 Downstream 58bp
chr16 772325 772325 1 + A G LUSC 772313 + 772293 772333 41 CTGTTCTCTCCCTCAGCTCCCGCTGCTGGAGGACAAGCTGC CTGTTCTCTCCCTCAGCTCCCGCTGCTGGAGGGCAAGCTGC < 41bp 1 0.439313657300459 1 0.0888529717922211 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM173A ENSG00000103254 CDS Human protein_coding chr16:772313 chr16:772325 nonsynonymous SNV 0.938 0 33 hm5C_associated_SNPs_28691 0 0 1 0 1 FAM173A chr16:772309 3'AG 772309 Downstream 17bp
chr19 49644750 49644750 1 + G T LUSC 49644738 + 49644718 49644758 41 GGGCTAGCCAAGCTGACAGGCCCAGGAGACAAGGACCGAAG GGGCTAGCCAAGCTGACAGGCCCAGGAGACAATGACCGAAG < 41bp 1 0.216339938498986 1 0.384296238422394 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49644738 chr19:49644750 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_28692 0 0 0 0 2 PPFIA3 chr19:49644677 3'AG 49644677 Downstream 74bp
chr19 49644750 49644750 1 + G T LUSC 49644738 + 49644718 49644758 41 GGGCTAGCCAAGCTGACAGGCCCAGGAGACAAGGACCGAAG GGGCTAGCCAAGCTGACAGGCCCAGGAGACAATGACCGAAG < 41bp 1 0.216339938498986 1 0.384296238422394 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49644738 chr19:49644750 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_28692 0 0 0 0 2 PPFIA3 chr19:49644770 5'GT 49644770 Upstream 21bp
chr19 56925400 56925400 1 + A T LUSC 56925395 + 56925375 56925415 41 ATGGGAATGGCTGAACCCTGCTCAGAGGAATTTGTACAGGA ATGGGAATGGCTGAACCCTGCTCAGTGGAATTTGTACAGGA < 41bp 1 0.699654799574867 1 0.137085467576981 experiment 0.600690400850266 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF583 ENSG00000198440 CDS Human protein_coding chr19:56925395 chr19:56925400 nonsynonymous SNV 0.286 3 26 hm5C_associated_SNPs_28693 0 0 0 0 2 ZNF583 chr19:56925328 3'AG 56925328 Downstream 73bp
chr19 56925400 56925400 1 + A T LUSC 56925395 + 56925375 56925415 41 ATGGGAATGGCTGAACCCTGCTCAGAGGAATTTGTACAGGA ATGGGAATGGCTGAACCCTGCTCAGTGGAATTTGTACAGGA < 41bp 1 0.699654799574867 1 0.137085467576981 experiment 0.600690400850266 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF583 ENSG00000198440 CDS Human protein_coding chr19:56925395 chr19:56925400 nonsynonymous SNV 0.286 3 26 hm5C_associated_SNPs_28693 0 0 0 0 2 ZNF583 chr19:56925454 5'GT 56925454 Upstream 55bp
chr1 237052583 237052583 1 + G A LUSC 237052594 + 237052574 237052614 41 GGCAGCTCCGGGGCAAGTACCCGAATCGAGGCTTTCCCAAG GGCAGCTCCAGGGCAAGTACCCGAATCGAGGCTTTCCCAAG < 41bp 1 0.474458082271577 1 0.766167759895325 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTR ENSG00000116984 CDS Human protein_coding chr1:237052594 chr1:237052583 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_28694 0 0 1 0 1 MTR chr1:237052636 5'GT 237052636 Upstream 54bp
chr2 138762736 138762736 1 + T A LUSC 138762727 + 138762707 138762747 41 GTATTATGTAAAAGACATCCCAGCTACCCTGAAATTCTTCC GTATTATGTAAAAGACATCCCAGCTACCCAGAAATTCTTCC < 41bp 1 0.306792428807737 1 0.396398097276688 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HNMT ENSG00000150540 CDS Human protein_coding chr2:138762727 chr2:138762736 nonsynonymous SNV 0.993 2 30 hm5C_associated_SNPs_28695 0 0 1 0 2 HNMT chr2:138762702 3'AG 138762702 Downstream 35bp
chr2 138762736 138762736 1 + T A LUSC 138762727 + 138762707 138762747 41 GTATTATGTAAAAGACATCCCAGCTACCCTGAAATTCTTCC GTATTATGTAAAAGACATCCCAGCTACCCAGAAATTCTTCC < 41bp 1 0.306792428807737 1 0.396398097276688 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HNMT ENSG00000150540 CDS Human protein_coding chr2:138762727 chr2:138762736 nonsynonymous SNV 0.993 2 30 hm5C_associated_SNPs_28695 0 0 1 0 2 HNMT chr2:138762795 5'GT 138762795 Upstream 60bp
chr16 31235576 31235576 1 + G A LUSC 31235556 + 31235536 31235576 41 GCACCCGAGCCTGGTGGTGTCTTCCTCTGGCCGCCGCGTGG GCACCCGAGCCTGGTGGTGTCTTCCTCTGGCCGCCGCGTGA < 41bp 1 0.272950844765709 1 0.082557737827301 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31235556 chr16:31235576 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_28699 0 0 0 0 1 TRIM72 chr16:31235502 3'AG 31235502 Downstream 75bp
chr11 68204453 68204453 1 + A T LUSC 68204450 + 68204430 68204470 41 CCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG CCCCGACTGTATCGACGGCTCCGTCGAGCTCATGTGTGGTG < 41bp 1 0.0831519738937148 1 0.0910672843456268 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204450 chr11:68204453 nonsynonymous SNV 0.645 4 24 hm5C_associated_SNPs_28700 0 0 1 0 2 LRP5 chr11:68204357 3'AG 68204357 Downstream 97bp
chr11 68204453 68204453 1 + A T LUSC 68204450 + 68204430 68204470 41 CCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG CCCCGACTGTATCGACGGCTCCGTCGAGCTCATGTGTGGTG < 41bp 1 0.0831519738937148 1 0.0910672843456268 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204450 chr11:68204453 nonsynonymous SNV 0.645 4 24 hm5C_associated_SNPs_28700 0 0 1 0 2 LRP5 chr11:68204467 5'GT 68204467 Upstream 15bp
chr11 68204453 68204453 1 + A T LUSC 68204451 + 68204431 68204471 41 CCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTGA CCCGACTGTATCGACGGCTCCGTCGAGCTCATGTGTGGTGA < 41bp 1 0.239730239155627 1 0.321241319179535 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204451 chr11:68204453 nonsynonymous SNV 0.645 4 23 hm5C_associated_SNPs_28701 0 0 1 0 2 LRP5 chr11:68204357 3'AG 68204357 Downstream 97bp
chr11 68204453 68204453 1 + A T LUSC 68204451 + 68204431 68204471 41 CCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTGA CCCGACTGTATCGACGGCTCCGTCGAGCTCATGTGTGGTGA < 41bp 1 0.239730239155627 1 0.321241319179535 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204451 chr11:68204453 nonsynonymous SNV 0.645 4 23 hm5C_associated_SNPs_28701 0 0 1 0 2 LRP5 chr11:68204467 5'GT 68204467 Upstream 15bp
chr17 78335564 78335564 1 + A C LUSC 78335559 + 78335539 78335579 41 CCCAAGAAGTTCGTGGACATCTTTCAGCAGACTCCTCTGGG CCCAAGAAGTTCGTGGACATCTTTCCGCAGACTCCTCTGGG < 41bp 1 0.0275865138751964 1 0.0498823821544647 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78335559 chr17:78335564 nonsynonymous SNV 0.011 1 26 hm5C_associated_SNPs_28704 0 0 1 0 1 RNF213 chr17:78335534 3'AG 78335534 Downstream 31bp
chr9 18504880 18504880 1 + G A LUSC 18504862 + 18504842 18504882 41 CGCTCCGAGGAGGACCGGGACGGCCTATGGGATGCCTGGGG CGCTCCGAGGAGGACCGGGACGGCCTATGGGATGCCTGAGG < 41bp 1 0.309963044584991 1 0.348362386226654 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18504862 chr9:18504880 stopgain 0.999 0 39 hm5C_associated_SNPs_28705 0 0 0 0 1 ADAMTSL1 chr9:18504954 5'GT 18504954 Upstream 75bp
chr2 153494180 153494180 1 + G A LUSC 153494168 + 153494148 153494188 41 TCTTCTTTCCTGTCTTTGTCCGGTTTGTGAAAGCATATAAG TCTTCTTTCCTGTCTTTGTCCGGTTTGTGAAAACATATAAG < 41bp 1 0.161736832782885 1 0.248919248580933 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153494168 chr2:153494180 nonsynonymous SNV 0.999 4 33 hm5C_associated_SNPs_28706 0 0 1 0 2 FMNL2 chr2:153494087 3'AG 153494087 Downstream 94bp
chr2 153494180 153494180 1 + G A LUSC 153494168 + 153494148 153494188 41 TCTTCTTTCCTGTCTTTGTCCGGTTTGTGAAAGCATATAAG TCTTCTTTCCTGTCTTTGTCCGGTTTGTGAAAACATATAAG < 41bp 1 0.161736832782885 1 0.248919248580933 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153494168 chr2:153494180 nonsynonymous SNV 0.999 4 33 hm5C_associated_SNPs_28706 0 0 1 0 2 FMNL2 chr2:153494188 5'GT 153494188 Upstream 9bp
chr11 61507949 61507949 1 + A C LUSC 61507955 + 61507935 61507975 41 CTGCTGTGAGCAGGAGGAGCCCACATACTTTGCCATCTGGG CTGCTGTGAGCAGGCGGAGCCCACATACTTTGCCATCTGGG < 41bp 1 0.115454935381908 1 0.314559757709503 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507955 chr11:61507949 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_28707 0 0 1 0 1 DAGLA chr11:61507935 3'AG 61507935 Downstream 15bp
chr19 579631 579631 1 + C T LUSC 579629 + 579609 579649 41 CGTGGTGCTGAAGGAGGACGCGCTGCCCGGCCAGAAAACGG CGTGGTGCTGAAGGAGGACGCGTTGCCCGGCCAGAAAACGG < 41bp 1 0.246573518169382 1 0.376305282115936 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579629 chr19:579631 synonymous SNV . 0 23 hm5C_associated_SNPs_28708 0 0 1 0 1 BSG chr19:579656 5'GT 579656 Upstream 26bp
chr19 579631 579631 1 + C T LUSC 579636 + 579616 579656 41 CTGAAGGAGGACGCGCTGCCCGGCCAGAAAACGGAGTTCAA CTGAAGGAGGACGCGTTGCCCGGCCAGAAAACGGAGTTCAA < 41bp 1 0.548387886332846 1 0.797972440719604 experiment 0.903224227334308 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579636 chr19:579631 synonymous SNV . 0 16 hm5C_associated_SNPs_28709 0 0 1 0 1 BSG chr19:579656 5'GT 579656 Upstream 26bp
chr19 579631 579631 1 + C T LUSC 579640 + 579620 579660 41 AGGAGGACGCGCTGCCCGGCCAGAAAACGGAGTTCAAGTGA AGGAGGACGCGTTGCCCGGCCAGAAAACGGAGTTCAAGTGA < 41bp 1 0.752305051013846 1 0.586934030056 experiment 0.495389897972308 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579640 chr19:579631 synonymous SNV . 0 12 hm5C_associated_SNPs_28710 0 0 1 0 1 BSG chr19:579656 5'GT 579656 Upstream 26bp
chr19 579631 579631 1 + C T LUSC 579647 + 579627 579667 41 CGCGCTGCCCGGCCAGAAAACGGAGTTCAAGTGAGTGCCTG CGCGTTGCCCGGCCAGAAAACGGAGTTCAAGTGAGTGCCTG < 41bp 1 0.798693948887732 1 0.870799779891968 experiment 0.402612102224535 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579647 chr19:579631 synonymous SNV . 0 5 hm5C_associated_SNPs_28711 0 0 1 0 1 BSG chr19:579656 5'GT 579656 Upstream 26bp
chr16 12450136 12450136 1 + G T LUSC 12450135 + 12450115 12450155 41 GCTCATCGATCTCCGGGGACCGGTGAGTGTTTCCCCAACCC GCTCATCGATCTCCGGGGACCTGTGAGTGTTTCCCCAACCC < 41bp 1 0.333401492785088 1 0.142026573419571 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12450135 chr16:12450136 synonymous SNV . 0 22 hm5C_associated_SNPs_28712 0 0 1 0 1 SNX29 chr16:12450136 5'GT 12450136 Upstream 1bp
chr11 113078036 113078036 1 + G T LUSC 113078025 + 113078005 113078045 41 GCAGAATATTGTGAATGCCACCGCCAACCTCGGCCAGTCCG GCAGAATATTGTGAATGCCACCGCCAACCTCTGCCAGTCCG < 41bp 1 0.124229141964575 1 0.152986615896225 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113078025 chr11:113078036 nonsynonymous SNV 0.965 1 32 hm5C_associated_SNPs_28714 0 0 0 0 2 NCAM1 chr11:113077983 3'AG 113077983 Downstream 54bp
chr11 113078036 113078036 1 + G T LUSC 113078025 + 113078005 113078045 41 GCAGAATATTGTGAATGCCACCGCCAACCTCGGCCAGTCCG GCAGAATATTGTGAATGCCACCGCCAACCTCTGCCAGTCCG < 41bp 1 0.124229141964575 1 0.152986615896225 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113078025 chr11:113078036 nonsynonymous SNV 0.965 1 32 hm5C_associated_SNPs_28714 0 0 0 0 2 NCAM1 chr11:113078100 5'GT 113078100 Upstream 65bp
chr21 47986572 47986572 1 + G A LUSC 47986588 + 47986568 47986608 41 ATCCGAGCACACAGGAGCATCGCTGAGTGGTAAGAGCCCAG ATCCAAGCACACAGGAGCATCGCTGAGTGGTAAGAGCCCAG < 41bp 1 0.351872804310937 1 0.418894708156586 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47986588 chr21:47986572 nonsynonymous SNV 0.993 4 5 hm5C_associated_SNPs_28715 0 0 1 0 2 DIP2A chr21:47986473 3'AG 47986473 Downstream 100bp
chr21 47986572 47986572 1 + G A LUSC 47986588 + 47986568 47986608 41 ATCCGAGCACACAGGAGCATCGCTGAGTGGTAAGAGCCCAG ATCCAAGCACACAGGAGCATCGCTGAGTGGTAAGAGCCCAG < 41bp 1 0.351872804310937 1 0.418894708156586 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47986588 chr21:47986572 nonsynonymous SNV 0.993 4 5 hm5C_associated_SNPs_28715 0 0 1 0 2 DIP2A chr21:47986596 5'GT 47986596 Upstream 25bp
chr2 32339808 32339808 1 + G A LUSC 32339810 + 32339790 32339830 41 GGATCTGCAGGCCTTTCAGGCCACCATAGAGCACCTAGTTA GGATCTGCAGGCCTTTCAAGCCACCATAGAGCACCTAGTTA < 41bp 1 0.104398120341575 1 0.0842215120792389 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32339810 chr2:32339808 nonsynonymous SNV 0.946 0 19 hm5C_associated_SNPs_28716 0 0 1 0 1 SPAST chr2:32339894 5'GT 32339894 Upstream 87bp
chr2 32339808 32339808 1 + G A LUSC 32339813 + 32339793 32339833 41 TCTGCAGGCCTTTCAGGCCACCATAGAGCACCTAGTTACAG TCTGCAGGCCTTTCAAGCCACCATAGAGCACCTAGTTACAG < 41bp 1 0.270303337792057 1 0.0479306578636169 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32339813 chr2:32339808 nonsynonymous SNV 0.946 0 16 hm5C_associated_SNPs_28717 0 0 1 0 1 SPAST chr2:32339894 5'GT 32339894 Upstream 87bp
chr12 104056674 104056674 1 + C G LUSC 104056683 + 104056663 104056703 41 GAGATCACTGCCAAAAATGGCCGAATTTACACACTGACAGG GAGATCACTGCGAAAAATGGCCGAATTTACACACTGACAGG < 41bp 1 0.204292253425325 1 0.288525700569153 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient STAB2 ENSG00000136011 CDS Human protein_coding chr12:104056683 chr12:104056674 synonymous SNV . 0 12 hm5C_associated_SNPs_28719 0 0 0 0 1 STAB2 chr12:104056624 3'AG 104056624 Downstream 51bp
chr22 38352842 38352842 1 + C T LUSC 38352823 + 38352803 38352843 41 ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCC ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGTC < 41bp 1 0.761650859976502 1 0.510667443275452 experiment 0.476698280046996 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352823 chr22:38352842 nonsynonymous SNV 0.942 1 40 hm5C_associated_SNPs_28720 0 0 1 0 3 POLR2F chr22:38352780 3'AG 38352780 Downstream 63bp
chr22 38352842 38352842 1 + C T LUSC 38352823 + 38352803 38352843 41 ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCC ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGTC < 41bp 1 0.761650859976502 1 0.510667443275452 experiment 0.476698280046996 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352823 chr22:38352842 nonsynonymous SNV 0.942 1 40 hm5C_associated_SNPs_28720 0 0 1 0 3 POLR2F chr22:38352849 5'GT 38352849 Upstream 8bp
chr22 38352842 38352842 1 + C T LUSC 38352823 + 38352803 38352843 41 ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCC ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGTC < 41bp 1 0.761650859976502 1 0.510667443275452 experiment 0.476698280046996 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352823 chr22:38352842 nonsynonymous SNV 0.942 1 40 hm5C_associated_SNPs_28720 0 0 1 0 3 POLR2F chr22:38352908 5'GT 38352908 Upstream 67bp
chr22 38352842 38352842 1 + C T LUSC 38352831 + 38352811 38352851 41 GAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT GAGGATGAAGGGCTAGATGACTTGGAGAATGTCGAAGAGGT < 41bp 1 0.553498480423498 1 0.166638195514679 experiment 0.893003039153004 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352831 chr22:38352842 nonsynonymous SNV 0.942 1 32 hm5C_associated_SNPs_28721 0 0 1 0 3 POLR2F chr22:38352780 3'AG 38352780 Downstream 63bp
chr22 38352842 38352842 1 + C T LUSC 38352831 + 38352811 38352851 41 GAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT GAGGATGAAGGGCTAGATGACTTGGAGAATGTCGAAGAGGT < 41bp 1 0.553498480423498 1 0.166638195514679 experiment 0.893003039153004 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352831 chr22:38352842 nonsynonymous SNV 0.942 1 32 hm5C_associated_SNPs_28721 0 0 1 0 3 POLR2F chr22:38352849 5'GT 38352849 Upstream 8bp
chr22 38352842 38352842 1 + C T LUSC 38352831 + 38352811 38352851 41 GAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT GAGGATGAAGGGCTAGATGACTTGGAGAATGTCGAAGAGGT < 41bp 1 0.553498480423498 1 0.166638195514679 experiment 0.893003039153004 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352831 chr22:38352842 nonsynonymous SNV 0.942 1 32 hm5C_associated_SNPs_28721 0 0 1 0 3 POLR2F chr22:38352908 5'GT 38352908 Upstream 67bp
chr22 38352842 38352842 1 + C T LUSC 38352843 + 38352823 38352863 41 CTAGATGACTTGGAGAATGCCGAAGAGGTCAGTATTCAGCC CTAGATGACTTGGAGAATGTCGAAGAGGTCAGTATTCAGCC < 41bp 1 0.702097028898579 1 0.579234778881073 experiment 0.595805942202841 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352843 chr22:38352842 nonsynonymous SNV 0.942 1 20 hm5C_associated_SNPs_28722 0 0 1 0 3 POLR2F chr22:38352780 3'AG 38352780 Downstream 63bp
chr22 38352842 38352842 1 + C T LUSC 38352843 + 38352823 38352863 41 CTAGATGACTTGGAGAATGCCGAAGAGGTCAGTATTCAGCC CTAGATGACTTGGAGAATGTCGAAGAGGTCAGTATTCAGCC < 41bp 1 0.702097028898579 1 0.579234778881073 experiment 0.595805942202841 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352843 chr22:38352842 nonsynonymous SNV 0.942 1 20 hm5C_associated_SNPs_28722 0 0 1 0 3 POLR2F chr22:38352849 5'GT 38352849 Upstream 8bp
chr22 38352842 38352842 1 + C T LUSC 38352843 + 38352823 38352863 41 CTAGATGACTTGGAGAATGCCGAAGAGGTCAGTATTCAGCC CTAGATGACTTGGAGAATGTCGAAGAGGTCAGTATTCAGCC < 41bp 1 0.702097028898579 1 0.579234778881073 experiment 0.595805942202841 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352843 chr22:38352842 nonsynonymous SNV 0.942 1 20 hm5C_associated_SNPs_28722 0 0 1 0 3 POLR2F chr22:38352908 5'GT 38352908 Upstream 67bp
chr9 35560827 35560827 1 + G A LUSC 35560834 + 35560814 35560854 41 CGAAAAGCCCAGCGGGAGGCCCGGCCCACAAATAGGTGAGA CGAAAAGCCCAGCAGGAGGCCCGGCCCACAAATAGGTGAGA < 41bp 1 0.0717582085454181 1 0.264071196317673 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RUSC2 ENSG00000198853 CDS Human protein_coding chr9:35560834 chr9:35560827 nonsynonymous SNV 0.959 0 14 hm5C_associated_SNPs_28723 0 0 1 0 1 RUSC2 chr9:35560848 5'GT 35560848 Upstream 22bp
chr12 109937553 109937553 1 + G C LUSC 109937571 + 109937551 109937591 41 AAGAAGTCCAACCTGACCCACTGGCATCCTGTCCTTGGCTG AACAAGTCCAACCTGACCCACTGGCATCCTGTCCTTGGCTG < 41bp 1 0.517272505083433 1 0.432911694049835 experiment 0.965454989833134 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE3B ENSG00000151148 CDS Human protein_coding chr12:109937571 chr12:109937553 nonsynonymous SNV 0.999 4 3 hm5C_associated_SNPs_28725 0 0 1 0 1 UBE3B chr12:109937615 5'GT 109937615 Upstream 63bp
chr7 98601889 98601889 1 + G C LUSC 98601905 + 98601885 98601925 41 TCTTGGAGGCCAAGACCAAGCAACTCCCCAAATTCTTCCTC TCTTCGAGGCCAAGACCAAGCAACTCCCCAAATTCTTCCTC < 41bp 1 0.121926742924864 1 0.452069163322449 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98601905 chr7:98601889 nonsynonymous SNV 0.906 5 5 hm5C_associated_SNPs_28726 0 0 1 0 1 TRRAP chr7:98601813 3'AG 98601813 Downstream 77bp
chr14 93043734 93043734 1 + G A LUSC 93043725 + 93043705 93043745 41 ATGTTCCTGGTTCGCCGGGACAGCAGCTCGAAGCAGCTGGT ATGTTCCTGGTTCGCCGGGACAGCAGCTCAAAGCAGCTGGT < 41bp 1 0.470962656517358 1 0.414933502674103 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93043725 chr14:93043734 synonymous SNV . 0 30 hm5C_associated_SNPs_28727 0 0 0 0 2 RIN3 chr14:93043705 3'AG 93043705 Downstream 30bp
chr14 93043734 93043734 1 + G A LUSC 93043725 + 93043705 93043745 41 ATGTTCCTGGTTCGCCGGGACAGCAGCTCGAAGCAGCTGGT ATGTTCCTGGTTCGCCGGGACAGCAGCTCAAAGCAGCTGGT < 41bp 1 0.470962656517358 1 0.414933502674103 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93043725 chr14:93043734 synonymous SNV . 0 30 hm5C_associated_SNPs_28727 0 0 0 0 2 RIN3 chr14:93043822 5'GT 93043822 Upstream 89bp
chr7 149422532 149422532 1 + C G LUSC 149422538 + 149422518 149422558 41 CCAGCCAGGAGACTCTAGGTCTCAGAAGCCTGAACTGCAAC CCAGCCAGGAGACTGTAGGTCTCAGAAGCCTGAACTGCAAC < 41bp 1 0.35310900849384 1 0.494076997041702 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149422538 chr7:149422532 nonsynonymous SNV 0.000 1 15 hm5C_associated_SNPs_28728 0 0 0 0 1 KRBA1 chr7:149422579 5'GT 149422579 Upstream 48bp
chr3 51981791 51981791 1 + T A LUSC 51981779 + 51981759 51981799 41 TTGGCATGAAGTGTGGGGCCCACCATGTCGGCTACATGTTC TTGGCATGAAGTGTGGGGCCCACCATGTCGGCAACATGTTC < 41bp 1 0.579840062658029 1 0.160668134689331 experiment 0.840319874683941 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PARP3 ENSG00000041880 CDS Human protein_coding chr3:51981779 chr3:51981791 nonsynonymous SNV 0.965 3 33 hm5C_associated_SNPs_28729 0 0 0 0 1 PARP3 chr3:51981756 3'AG 51981756 Downstream 36bp
chr16 31123201 31123201 1 + G A LUSC 31123193 + 31123173 31123213 41 TGTTGCCATCTTGCTAGGATCTCAGACCGTGGTGGAGGAAT TGTTGCCATCTTGCTAGGATCTCAGACCATGGTGGAGGAAT < 41bp 1 0.390884815009505 1 0.185617089271545 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BCKDK ENSG00000103507 CDS Human protein_coding chr16:31123193 chr16:31123201 nonsynonymous SNV 0.948 4 29 hm5C_associated_SNPs_28730 0 0 1 0 1 BCKDK chr16:31123190 3'AG 31123190 Downstream 12bp
chr3 99897173 99897173 1 + C G LUSC 99897188 + 99897168 99897208 41 AACTTCTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGAA AACTTGTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGAA < 41bp 1 0.239194765779569 1 0.151932060718536 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMSS1 ENSG00000184220 CDS Human protein_coding chr3:99897188 chr3:99897173 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_28731 0 0 1 0 1 CMSS1 chr3:99897149 3'AG 99897149 Downstream 25bp
chr3 99897173 99897173 1 + C G LUSC 99897190 + 99897170 99897210 41 CTTCTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGAATC CTTGTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGAATC < 41bp 1 0.270511529890993 1 0.141157597303391 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CMSS1 ENSG00000184220 CDS Human protein_coding chr3:99897190 chr3:99897173 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_28732 0 0 1 0 1 CMSS1 chr3:99897149 3'AG 99897149 Downstream 25bp
chr7 56130730 56130730 1 + C G LUSC 56130745 + 56130725 56130765 41 ATTCTCTTGGTTGATGAGATCATGCGAGCTGGAATGTCTTC ATTCTGTTGGTTGATGAGATCATGCGAGCTGGAATGTCTTC < 41bp 1 0.439986909892619 1 0.0598278939723969 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCT6A ENSG00000146731 CDS Human protein_coding chr7:56130745 chr7:56130730 synonymous SNV . 0 6 hm5C_associated_SNPs_28734 0 0 1 0 1 CCT6A chr7:56130706 3'AG 56130706 Downstream 25bp
chr20 57484842 57484842 1 + G C LUSC 57484828 + 57484808 57484848 41 CCAACCGCCTGCAGGAGGCTCTGAACCTCTTCAAGAGCATC CCAACCGCCTGCAGGAGGCTCTGAACCTCTTCAACAGCATC < 41bp 1 0.402872230266245 1 0.25898203253746 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNAS ENSG00000087460 CDS Human protein_coding chr20:57484828 chr20:57484842 nonsynonymous SNV 1.000 5 35 hm5C_associated_SNPs_28735 0 0 1 0 1 GNAS chr20:57484859 5'GT 57484859 Upstream 18bp
chr6 160477534 160477534 1 + C G LUSC 160477524 + 160477504 160477544 41 CTGTGGAACACAGAGGCTGCCTGTCCCATTCAGACAACGAC CTGTGGAACACAGAGGCTGCCTGTCCCATTGAGACAACGAC < 41bp 1 0.0332560324846523 1 0.116905510425568 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160477524 chr6:160477534 nonsynonymous SNV 0.164 0 31 hm5C_associated_SNPs_28736 0 0 1 0 2 IGF2R chr6:160477456 3'AG 160477456 Downstream 79bp
chr6 160477534 160477534 1 + C G LUSC 160477524 + 160477504 160477544 41 CTGTGGAACACAGAGGCTGCCTGTCCCATTCAGACAACGAC CTGTGGAACACAGAGGCTGCCTGTCCCATTGAGACAACGAC < 41bp 1 0.0332560324846523 1 0.116905510425568 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160477524 chr6:160477534 nonsynonymous SNV 0.164 0 31 hm5C_associated_SNPs_28736 0 0 1 0 2 IGF2R chr6:160477557 5'GT 160477557 Upstream 24bp
chr9 37432082 37432082 1 + C T LUSC 37432088 + 37432068 37432108 41 TGGACTGGATGTGACGAGCCCAGAACCACTGCCTACAAACC TGGACTGGATGTGATGAGCCCAGAACCACTGCCTACAAACC < 41bp 1 0.521611972755783 1 0.366869568824768 experiment 0.956776054488434 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37432088 chr9:37432082 nonsynonymous SNV 0.969 2 15 hm5C_associated_SNPs_28737 1 0 1 0 2 GRHPR chr9:37432005 3'AG 37432005 Downstream 78bp
chr9 37432082 37432082 1 + C T LUSC 37432088 + 37432068 37432108 41 TGGACTGGATGTGACGAGCCCAGAACCACTGCCTACAAACC TGGACTGGATGTGATGAGCCCAGAACCACTGCCTACAAACC < 41bp 1 0.521611972755783 1 0.366869568824768 experiment 0.956776054488434 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37432088 chr9:37432082 nonsynonymous SNV 0.969 2 15 hm5C_associated_SNPs_28737 1 0 1 0 2 GRHPR chr9:37432135 5'GT 37432135 Upstream 54bp
chr1 110172949 110172949 1 + A G LUSC 110172951 + 110172931 110172971 41 TCCTCAGCTATCACCGGAATCCGCTACCGGAGTACCTGTCC TCCTCAGCTATCACCGGAGTCCGCTACCGGAGTACCTGTCC < 41bp 1 0.187470120849715 1 0.158618986606598 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110172951 chr1:110172949 nonsynonymous SNV 0.965 4 19 hm5C_associated_SNPs_28739 0 0 0 0 1 AMPD2 chr1:110172855 3'AG 110172855 Downstream 95bp
chr16 8735040 8735040 1 + A T LUSC 8735032 + 8735012 8735052 41 TGGACTGGCTGAAGGACGACCTCTGCACAGGTGTGTGTTTC TGGACTGGCTGAAGGACGACCTCTGCACTGGTGTGTGTTTC < 41bp 1 0.212737487326899 1 0.524645268917084 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control METTL22 ENSG00000067365 CDS Human protein_coding chr16:8735032 chr16:8735040 synonymous SNV . 0 29 hm5C_associated_SNPs_28740 0 0 1 0 2 METTL22 chr16:8734988 3'AG 8734988 Downstream 53bp
chr16 8735040 8735040 1 + A T LUSC 8735032 + 8735012 8735052 41 TGGACTGGCTGAAGGACGACCTCTGCACAGGTGTGTGTTTC TGGACTGGCTGAAGGACGACCTCTGCACTGGTGTGTGTTTC < 41bp 1 0.212737487326899 1 0.524645268917084 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control METTL22 ENSG00000067365 CDS Human protein_coding chr16:8735032 chr16:8735040 synonymous SNV . 0 29 hm5C_associated_SNPs_28740 0 0 1 0 2 METTL22 chr16:8735041 5'GT 8735041 Upstream 2bp
chr22 44330490 44330490 1 + T C LUSC 44330489 + 44330469 44330509 41 GCTTGCTTTGCTCACAGGTGCTGGGAGAGATATGCCTTCGA GCTTGCTTTGCTCACAGGTGCCGGGAGAGATATGCCTTCGA < 41bp 1 0.441143261910345 1 0.683570563793182 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44330489 chr22:44330490 nonsynonymous SNV 0.123 3 22 hm5C_associated_SNPs_28749 0 0 1 0 1 PNPLA3 chr22:44330486 3'AG 44330486 Downstream 5bp
chr11 34129835 34129835 1 + G A LUSC 34129843 + 34129823 34129863 41 AGTAGCTGAGCGGCAAAGATCTCTCTTTGTTGTAGTTGGGG AGTAGCTGAGCGACAAAGATCTCTCTTTGTTGTAGTTGGGG < 41bp 1 0.149036038243561 1 0.0933279395103455 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129843 chr11:34129835 synonymous SNV . 0 13 hm5C_associated_SNPs_28751 0 0 1 0 2 NAT10 chr11:34129758 3'AG 34129758 Downstream 78bp
chr11 34129835 34129835 1 + G A LUSC 34129843 + 34129823 34129863 41 AGTAGCTGAGCGGCAAAGATCTCTCTTTGTTGTAGTTGGGG AGTAGCTGAGCGACAAAGATCTCTCTTTGTTGTAGTTGGGG < 41bp 1 0.149036038243561 1 0.0933279395103455 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129843 chr11:34129835 synonymous SNV . 0 13 hm5C_associated_SNPs_28751 0 0 1 0 2 NAT10 chr11:34129880 5'GT 34129880 Upstream 46bp
chr20 60878660 60878660 1 + G T LUSC 60878643 + 60878623 60878663 41 GGATGACGACCTCAGGCGCGCTCTTTCCAAGCCTGGTGCCA GGATGACGACCTCAGGCGCGCTCTTTCCAAGCCTGGTTCCA < 41bp 1 0.146663540327695 1 0.0160151422023773 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60878643 chr20:60878660 synonymous SNV . 0 38 hm5C_associated_SNPs_28753 0 0 1 0 1 ADRM1 chr20:60878624 3'AG 60878624 Downstream 37bp
chr17 37676267 37676267 1 + C T LUSC 37676272 + 37676252 37676292 41 CTAGATCCTAGTAAGCGGTGCACAGCTGAACAGACCCTACA CTAGATCCTAGTAAGTGGTGCACAGCTGAACAGACCCTACA < 41bp 1 0.194175355766236 1 0.154556840658188 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37676272 chr17:37676267 nonsynonymous SNV 0.984 3 16 hm5C_associated_SNPs_28755 0 0 1 0 1 CDK12 chr17:37676209 3'AG 37676209 Downstream 59bp
chr19 11474848 11474848 1 + C T LUSC 11474841 + 11474821 11474861 41 TGTCTCTTTGTCTCAGGAACCCGAGGTCTGCAGGCCGCATT TGTCTCTTTGTCTCAGGAACCCGAGGTTTGCAGGCCGCATT < 41bp 1 0.488983603217972 1 0.884228348731995 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11474841 chr19:11474848 nonsynonymous SNV 0.999 1 28 hm5C_associated_SNPs_28758 0 0 1 0 2 PLPPR2 chr19:11474837 3'AG 11474837 Downstream 12bp
chr19 11474848 11474848 1 + C T LUSC 11474841 + 11474821 11474861 41 TGTCTCTTTGTCTCAGGAACCCGAGGTCTGCAGGCCGCATT TGTCTCTTTGTCTCAGGAACCCGAGGTTTGCAGGCCGCATT < 41bp 1 0.488983603217972 1 0.884228348731995 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11474841 chr19:11474848 nonsynonymous SNV 0.999 1 28 hm5C_associated_SNPs_28758 0 0 1 0 2 PLPPR2 chr19:11474888 5'GT 11474888 Upstream 41bp
chr19 49469158 49469158 1 + C G LUSC 49469156 + 49469136 49469176 41 ACCAGCGTGGCGGCCGCGCTCTCTTCCAGGACATCAAGGTA ACCAGCGTGGCGGCCGCGCTCTGTTCCAGGACATCAAGGTA < 41bp 1 0.462180996434863 1 0.237673819065094 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469156 chr19:49469158 synonymous SNV . 0 23 hm5C_associated_SNPs_28760 0 0 1 0 1 FTL chr19:49469173 5'GT 49469173 Upstream 16bp
chr19 49469158 49469158 1 + C G LUSC 49469161 + 49469141 49469181 41 CGTGGCGGCCGCGCTCTCTTCCAGGACATCAAGGTAACTAG CGTGGCGGCCGCGCTCTGTTCCAGGACATCAAGGTAACTAG < 41bp 1 0.707930232043787 1 0.752147912979126 experiment 0.584139535912426 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469161 chr19:49469158 synonymous SNV . 0 18 hm5C_associated_SNPs_28761 0 0 1 0 1 FTL chr19:49469173 5'GT 49469173 Upstream 16bp
chr16 24818014 24818014 1 + G A LUSC 24817997 + 24817977 24818017 41 CACCATCTCAGCAGCAGCCACTCCATCAGCCAGCCATGAAG CACCATCTCAGCAGCAGCCACTCCATCAGCCAGCCATAAAG < 41bp 1 0.674853262510103 1 0.972663402557373 experiment 0.650293474979793 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24817997 chr16:24818014 nonsynonymous SNV 0.999 2 38 hm5C_associated_SNPs_28763 0 0 1 0 1 TNRC6A chr16:24818105 5'GT 24818105 Upstream 92bp
chr17 65905765 65905765 1 + A T LUSC 65905785 + 65905765 65905805 41 AATAAAAATAGAGCCTGATTCTGAAAAAGATGAGGTAAAAG TATAAAAATAGAGCCTGATTCTGAAAAAGATGAGGTAAAAG < 41bp 1 0.430477585224988 1 0.678572237491608 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65905785 chr17:65905765 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_28764 0 0 1 0 1 BPTF chr17:65905698 3'AG 65905698 Downstream 68bp
chr11 47256931 47256931 1 + C T LUSC 47256916 + 47256896 47256936 41 AGTGGGACTGCCCCCTGGGCCTGATCCCGCACCCTCACCGT AGTGGGACTGCCCCCTGGGCCTGATCCCGCACCCTTACCGT < 41bp 1 0.456013722100746 1 0.0709480941295624 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DDB2 ENSG00000134574 CDS Human protein_coding chr11:47256916 chr11:47256931 nonsynonymous SNV 0.940 4 36 hm5C_associated_SNPs_28766 0 0 1 0 1 DDB2 chr11:47256963 5'GT 47256963 Upstream 33bp
chr5 21497230 21497230 1 + G C LUSC 21497215 + 21497195 21497235 41 TGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAAC TGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTCAGAAC < 41bp 1 0.305293217697913 1 0.804998934268951 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21497215 chr5:21497230 . . 0 36 hm5C_associated_SNPs_28767 0 0 1 0 1 GUSBP1 chr5:21497131 3'AG 21497131 Downstream 100bp
chr2 211525340 211525340 1 + G T LUSC 211525357 + 211525337 211525377 41 ATTGGACCATCCCATAATTCCTGCTGACTATGTTGCAATTA ATTTGACCATCCCATAATTCCTGCTGACTATGTTGCAATTA < 41bp 1 0.298633874833015 1 0.0455035865306854 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211525357 chr2:211525340 nonsynonymous SNV 0.935 2 4 hm5C_associated_SNPs_28768 0 0 1 0 1 CPS1 chr2:211525379 5'GT 211525379 Upstream 40bp
chr2 42511812 42511812 1 + G C LUSC 42511809 + 42511789 42511829 41 TGACAAAATTAGGATTGCAACTGGACAGATAGCTGGCGTGG TGACAAAATTAGGATTGCAACTGCACAGATAGCTGGCGTGG < 41bp 1 0.757527292266414 1 0.641687750816345 experiment 0.484945415467172 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EML4 ENSG00000143924 CDS Human protein_coding chr2:42511809 chr2:42511812 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_28769 0 0 1 0 1 EML4 chr2:42511774 3'AG 42511774 Downstream 39bp
chr12 78510561 78510561 1 + C T LUSC 78510576 + 78510556 78510596 41 GATGACAGCAGTTCAGTGAGCAGTGGTCTCAGTGACACCCT GATGATAGCAGTTCAGTGAGCAGTGGTCTCAGTGACACCCT < 41bp 1 0.388642009066905 1 0.67292058467865 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAV3 ENSG00000067798 CDS Human protein_coding chr12:78510576 chr12:78510561 synonymous SNV . 0 6 hm5C_associated_SNPs_28770 0 0 0 0 1 NAV3 chr12:78510552 3'AG 78510552 Downstream 10bp
chr18 56063416 56063416 1 + T C LUSC 56063414 + 56063394 56063434 41 TGCAGCTTTAATCGCCTTGACTTACCTCCATATGAAACCTT TGCAGCTTTAATCGCCTTGACTCACCTCCATATGAAACCTT < 41bp 1 0.107983025272107 1 0.13838467001915 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NEDD4L ENSG00000049759 CDS Human protein_coding chr18:56063414 chr18:56063416 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_28771 0 0 1 0 1 NEDD4L chr18:56063399 3'AG 56063399 Downstream 18bp
chr10 17277176 17277176 1 + C A LUSC 17277185 + 17277165 17277205 41 CAGAATGAGTCCCTGGAACGCCAGATGCGTGAAATGGAAGA CAGAATGAGTCACTGGAACGCCAGATGCGTGAAATGGAAGA < 41bp 1 0.378437876230309 1 0.528266727924347 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277185 chr10:17277176 synonymous SNV . 0 12 hm5C_associated_SNPs_28775 0 0 1 0 1 VIM chr10:17277168 3'AG 17277168 Downstream 9bp
chr10 17277176 17277176 1 + C A LUSC 17277192 + 17277172 17277212 41 AGTCCCTGGAACGCCAGATGCGTGAAATGGAAGAGAACTTT AGTCACTGGAACGCCAGATGCGTGAAATGGAAGAGAACTTT < 41bp 1 0.637026744585894 1 0.258913487195969 experiment 0.725946510828213 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277192 chr10:17277176 synonymous SNV . 0 5 hm5C_associated_SNPs_28776 0 0 1 0 1 VIM chr10:17277168 3'AG 17277168 Downstream 9bp
chr10 17277177 17277177 1 + C A LUSC 17277176 + 17277156 17277196 41 CACCCCCTGCAGAATGAGTCCCTGGAACGCCAGATGCGTGA CACCCCCTGCAGAATGAGTCCATGGAACGCCAGATGCGTGA < 41bp 1 0.317919870790732 1 0.209300428628922 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277176 chr10:17277177 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_28777 0 0 1 0 1 VIM chr10:17277168 3'AG 17277168 Downstream 10bp
chr10 17277177 17277177 1 + C A LUSC 17277185 + 17277165 17277205 41 CAGAATGAGTCCCTGGAACGCCAGATGCGTGAAATGGAAGA CAGAATGAGTCCATGGAACGCCAGATGCGTGAAATGGAAGA < 41bp 1 0.391843177698134 1 0.445963084697723 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277185 chr10:17277177 nonsynonymous SNV 0.993 4 13 hm5C_associated_SNPs_28778 0 0 1 0 1 VIM chr10:17277168 3'AG 17277168 Downstream 10bp
chr10 17277177 17277177 1 + C A LUSC 17277192 + 17277172 17277212 41 AGTCCCTGGAACGCCAGATGCGTGAAATGGAAGAGAACTTT AGTCCATGGAACGCCAGATGCGTGAAATGGAAGAGAACTTT < 41bp 1 0.647430558412424 1 0.260730296373367 experiment 0.705138883175153 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277192 chr10:17277177 nonsynonymous SNV 0.993 4 6 hm5C_associated_SNPs_28779 0 0 1 0 1 VIM chr10:17277168 3'AG 17277168 Downstream 10bp
chr12 118465787 118465787 1 + T A LUSC 118465804 + 118465784 118465824 41 GGGTTGGCACTGCATGATATCCTGACAGAGATACACTTGTT GGGATGGCACTGCATGATATCCTGACAGAGATACACTTGTT < 41bp 1 0.479775560931385 1 0.14996749162674 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RFC5 ENSG00000111445 CDS Human protein_coding chr12:118465804 chr12:118465787 nonsynonymous SNV 0.770 2 4 hm5C_associated_SNPs_28780 0 0 1 0 3 RFC5 chr12:118465758 3'AG 118465758 Downstream 30bp
chr12 118465787 118465787 1 + T A LUSC 118465804 + 118465784 118465824 41 GGGTTGGCACTGCATGATATCCTGACAGAGATACACTTGTT GGGATGGCACTGCATGATATCCTGACAGAGATACACTTGTT < 41bp 1 0.479775560931385 1 0.14996749162674 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RFC5 ENSG00000111445 CDS Human protein_coding chr12:118465804 chr12:118465787 nonsynonymous SNV 0.770 2 4 hm5C_associated_SNPs_28780 0 0 1 0 3 RFC5 chr12:118465767 3'AG 118465767 Downstream 21bp
chr12 118465787 118465787 1 + T A LUSC 118465804 + 118465784 118465824 41 GGGTTGGCACTGCATGATATCCTGACAGAGATACACTTGTT GGGATGGCACTGCATGATATCCTGACAGAGATACACTTGTT < 41bp 1 0.479775560931385 1 0.14996749162674 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RFC5 ENSG00000111445 CDS Human protein_coding chr12:118465804 chr12:118465787 nonsynonymous SNV 0.770 2 4 hm5C_associated_SNPs_28780 0 0 1 0 3 RFC5 chr12:118465835 5'GT 118465835 Upstream 49bp
chr1 145509204 145509204 1 + G T LUSC 145509191 + 145509171 145509211 41 GCCGAAGACGCAGCAGAAGTCCAGACCGGAGACGTCGCTGA GCCGAAGACGCAGCAGAAGTCCAGACCGGAGACTTCGCTGA < 41bp 1 0.380128260094311 1 0.293040245771408 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM8A ENSG00000131795 CDS Human other chr1:145509191 chr1:145509204 nonsynonymous SNV . 0 34 hm5C_associated_SNPs_28781 0 0 0 0 1 RBM8A chr1:145509166 3'AG 145509166 Downstream 39bp
chr1 145509204 145509204 1 + G T LUSC 145509206 + 145509186 145509226 41 GAAGTCCAGACCGGAGACGTCGCTGACAGGTCCTCTGTTGT GAAGTCCAGACCGGAGACTTCGCTGACAGGTCCTCTGTTGT < 41bp 1 0.181182153353549 1 0.218974202871323 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM8A ENSG00000131795 CDS Human other chr1:145509206 chr1:145509204 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_28782 0 0 0 0 1 RBM8A chr1:145509166 3'AG 145509166 Downstream 39bp
chrX 153692007 153692007 1 + C G LUSC 153692001 + 153691981 153692021 41 GCCTGCCTGGGCTCCGGGGACCCGCACTGTGGTTGGTGTGT GCCTGCCTGGGCTCCGGGGACCCGCAGTGTGGTTGGTGTGT < 41bp 1 0.126694935521625 1 0.123307377099991 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153692001 chrX:153692007 nonsynonymous SNV 0.864 4 27 hm5C_associated_SNPs_28784 0 0 1 0 2 PLXNA3 chrX:153691933 3'AG 153691933 Downstream 75bp
chrX 153692007 153692007 1 + C G LUSC 153692001 + 153691981 153692021 41 GCCTGCCTGGGCTCCGGGGACCCGCACTGTGGTTGGTGTGT GCCTGCCTGGGCTCCGGGGACCCGCAGTGTGGTTGGTGTGT < 41bp 1 0.126694935521625 1 0.123307377099991 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153692001 chrX:153692007 nonsynonymous SNV 0.864 4 27 hm5C_associated_SNPs_28784 0 0 1 0 2 PLXNA3 chrX:153692033 5'GT 153692033 Upstream 27bp
chr20 57289620 57289620 1 + G A LUSC 57289631 + 57289611 57289651 41 CCTAGGACCGAGACAACAGCCCCAGCTCCTGTGCTGGCCTC CCTAGGACCAAGACAACAGCCCCAGCTCCTGTGCTGGCCTC < 41bp 1 0.383545256203201 1 0.352464318275452 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57289631 chr20:57289620 nonsynonymous SNV 0.998 4 10 hm5C_associated_SNPs_28785 0 0 1 0 1 NPEPL1 chr20:57289616 3'AG 57289616 Downstream 5bp
chr3 49212176 49212176 1 + G C LUSC 49212179 + 49212159 49212199 41 CCAATTCCATTGACAGGGGGCCGCCAGGGCAAGCTCCCGGT CCAATTCCATTGACAGGCGGCCGCCAGGGCAAGCTCCCGGT < 41bp 1 0.071821355432354 1 0.138374000787735 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212179 chr3:49212176 synonymous SNV . 0 18 hm5C_associated_SNPs_28788 0 0 1 0 1 KLHDC8B chr3:49212175 3'AG 49212175 Downstream 2bp
chr3 49212176 49212176 1 + G C LUSC 49212180 + 49212160 49212200 41 CAATTCCATTGACAGGGGGCCGCCAGGGCAAGCTCCCGGTG CAATTCCATTGACAGGCGGCCGCCAGGGCAAGCTCCCGGTG < 41bp 1 0.674526883604308 1 0.363917112350464 experiment 0.650946232791385 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212180 chr3:49212176 synonymous SNV . 0 17 hm5C_associated_SNPs_28789 0 0 1 0 1 KLHDC8B chr3:49212175 3'AG 49212175 Downstream 2bp
chr2 217364720 217364720 1 + A G LUSC 217364705 + 217364685 217364725 41 GACGAGCTGTGGGGATCTGGCACTGTGGTTCCTGCATGAAG GACGAGCTGTGGGGATCTGGCACTGTGGTTCCTGCGTGAAG < 41bp 1 0.712951459230717 1 0.14524918794632 experiment 0.574097081538565 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364705 chr2:217364720 nonsynonymous SNV 1.000 0 36 hm5C_associated_SNPs_28792 0 0 1 0 2 RPL37A chr2:217364672 3'AG 217364672 Downstream 49bp
chr2 217364720 217364720 1 + A G LUSC 217364705 + 217364685 217364725 41 GACGAGCTGTGGGGATCTGGCACTGTGGTTCCTGCATGAAG GACGAGCTGTGGGGATCTGGCACTGTGGTTCCTGCGTGAAG < 41bp 1 0.712951459230717 1 0.14524918794632 experiment 0.574097081538565 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364705 chr2:217364720 nonsynonymous SNV 1.000 0 36 hm5C_associated_SNPs_28792 0 0 1 0 2 RPL37A chr2:217364754 5'GT 217364754 Upstream 35bp
chr2 217364720 217364720 1 + A G LUSC 217364733 + 217364713 217364753 41 TTCCTGCATGAAGACAGTGGCTGGCGGTGCCTGGACGTACA TTCCTGCGTGAAGACAGTGGCTGGCGGTGCCTGGACGTACA < 41bp 1 0.759217163305264 1 0.265984117984772 experiment 0.481565673389473 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364733 chr2:217364720 nonsynonymous SNV 1.000 0 8 hm5C_associated_SNPs_28793 0 0 1 0 2 RPL37A chr2:217364672 3'AG 217364672 Downstream 49bp
chr2 217364720 217364720 1 + A G LUSC 217364733 + 217364713 217364753 41 TTCCTGCATGAAGACAGTGGCTGGCGGTGCCTGGACGTACA TTCCTGCGTGAAGACAGTGGCTGGCGGTGCCTGGACGTACA < 41bp 1 0.759217163305264 1 0.265984117984772 experiment 0.481565673389473 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364733 chr2:217364720 nonsynonymous SNV 1.000 0 8 hm5C_associated_SNPs_28793 0 0 1 0 2 RPL37A chr2:217364754 5'GT 217364754 Upstream 35bp
chr2 217364720 217364720 1 + A G LUSC 217364737 + 217364717 217364757 41 TGCATGAAGACAGTGGCTGGCGGTGCCTGGACGTACAAGTG TGCGTGAAGACAGTGGCTGGCGGTGCCTGGACGTACAAGTG < 41bp 1 0.667778083923243 1 0.496348172426224 experiment 0.664443832153514 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364737 chr2:217364720 nonsynonymous SNV 1.000 0 4 hm5C_associated_SNPs_28794 0 0 1 0 2 RPL37A chr2:217364672 3'AG 217364672 Downstream 49bp
chr2 217364720 217364720 1 + A G LUSC 217364737 + 217364717 217364757 41 TGCATGAAGACAGTGGCTGGCGGTGCCTGGACGTACAAGTG TGCGTGAAGACAGTGGCTGGCGGTGCCTGGACGTACAAGTG < 41bp 1 0.667778083923243 1 0.496348172426224 experiment 0.664443832153514 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364737 chr2:217364720 nonsynonymous SNV 1.000 0 4 hm5C_associated_SNPs_28794 0 0 1 0 2 RPL37A chr2:217364754 5'GT 217364754 Upstream 35bp
chr9 137987784 137987784 1 + G A LUSC 137987790 + 137987770 137987810 41 TACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTC TACGTGGAGAAGATAGAGAACCAAATGAAAGGACTGGAGTC < 41bp 1 0.272489447607181 1 0.189847707748413 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137987790 chr9:137987784 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_28796 0 0 1 0 2 OLFM1 chr9:137987710 3'AG 137987710 Downstream 75bp
chr9 137987784 137987784 1 + G A LUSC 137987790 + 137987770 137987810 41 TACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTC TACGTGGAGAAGATAGAGAACCAAATGAAAGGACTGGAGTC < 41bp 1 0.272489447607181 1 0.189847707748413 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137987790 chr9:137987784 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_28796 0 0 1 0 2 OLFM1 chr9:137987865 5'GT 137987865 Upstream 82bp
chr9 137987784 137987784 1 + G A LUSC 137987791 + 137987771 137987811 41 ACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTCC ACGTGGAGAAGATAGAGAACCAAATGAAAGGACTGGAGTCC < 41bp 1 0.325579898107559 1 0.547200918197632 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137987791 chr9:137987784 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_28797 0 0 1 0 2 OLFM1 chr9:137987710 3'AG 137987710 Downstream 75bp
chr9 137987784 137987784 1 + G A LUSC 137987791 + 137987771 137987811 41 ACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTCC ACGTGGAGAAGATAGAGAACCAAATGAAAGGACTGGAGTCC < 41bp 1 0.325579898107559 1 0.547200918197632 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137987791 chr9:137987784 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_28797 0 0 1 0 2 OLFM1 chr9:137987865 5'GT 137987865 Upstream 82bp
chr1 37948064 37948064 1 + G A LUSC 37948073 + 37948053 37948093 41 CCCACTGGGCCGGCACGGGCCCAGCCTGGACAACTTCCTGC CCCACTGGGCCAGCACGGGCCCAGCCTGGACAACTTCCTGC < 41bp 1 0.119938437895478 1 0.065541535615921 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37948073 chr1:37948064 nonsynonymous SNV 0.973 4 12 hm5C_associated_SNPs_28799 0 0 0 0 2 ZC3H12A chr1:37948035 3'AG 37948035 Downstream 30bp
chr1 37948064 37948064 1 + G A LUSC 37948073 + 37948053 37948093 41 CCCACTGGGCCGGCACGGGCCCAGCCTGGACAACTTCCTGC CCCACTGGGCCAGCACGGGCCCAGCCTGGACAACTTCCTGC < 41bp 1 0.119938437895478 1 0.065541535615921 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37948073 chr1:37948064 nonsynonymous SNV 0.973 4 12 hm5C_associated_SNPs_28799 0 0 0 0 2 ZC3H12A chr1:37948141 5'GT 37948141 Upstream 78bp
chr1 37948064 37948064 1 + G A LUSC 37948074 + 37948054 37948094 41 CCACTGGGCCGGCACGGGCCCAGCCTGGACAACTTCCTGCG CCACTGGGCCAGCACGGGCCCAGCCTGGACAACTTCCTGCG < 41bp 1 0.323306286275146 1 0.143919765949249 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37948074 chr1:37948064 nonsynonymous SNV 0.973 4 11 hm5C_associated_SNPs_28800 0 0 0 0 2 ZC3H12A chr1:37948035 3'AG 37948035 Downstream 30bp
chr1 37948064 37948064 1 + G A LUSC 37948074 + 37948054 37948094 41 CCACTGGGCCGGCACGGGCCCAGCCTGGACAACTTCCTGCG CCACTGGGCCAGCACGGGCCCAGCCTGGACAACTTCCTGCG < 41bp 1 0.323306286275146 1 0.143919765949249 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37948074 chr1:37948064 nonsynonymous SNV 0.973 4 11 hm5C_associated_SNPs_28800 0 0 0 0 2 ZC3H12A chr1:37948141 5'GT 37948141 Upstream 78bp
chr8 145150845 145150845 1 + C A LUSC 145150830 + 145150810 145150850 41 GGCAGGGGGTGCGGGGCTGGCCATGGCTCTGCATTCGGCTG GGCAGGGGGTGCGGGGCTGGCCATGGCTCTGCATTAGGCTG < 41bp 1 0.481624729738071 1 0.407492697238922 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145150830 chr8:145150845 stopgain 0.941 0 36 hm5C_associated_SNPs_28801 0 0 1 0 1 CYC1 chr8:145150932 5'GT 145150932 Upstream 88bp
chr12 72274315 72274315 1 + C G LUSC 72274307 + 72274287 72274327 41 AGAAAGAGGTCATCGAGGATCAGAACATCTGAACAGTTACG AGAAAGAGGTCATCGAGGATCAGAACATGTGAACAGTTACG < 41bp 1 0.721169790601937 1 0.627143204212189 experiment 0.557660418796126 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72274307 chr12:72274315 nonsynonymous SNV 0.979 0 29 hm5C_associated_SNPs_28804 0 0 1 0 2 TBC1D15 chr12:72274249 3'AG 72274249 Downstream 67bp
chr12 72274315 72274315 1 + C G LUSC 72274307 + 72274287 72274327 41 AGAAAGAGGTCATCGAGGATCAGAACATCTGAACAGTTACG AGAAAGAGGTCATCGAGGATCAGAACATGTGAACAGTTACG < 41bp 1 0.721169790601937 1 0.627143204212189 experiment 0.557660418796126 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72274307 chr12:72274315 nonsynonymous SNV 0.979 0 29 hm5C_associated_SNPs_28804 0 0 1 0 2 TBC1D15 chr12:72274387 5'GT 72274387 Upstream 73bp
chr22 24560512 24560512 1 + C A LUSC 24560499 + 24560479 24560519 41 AGCACCCTGCTGAAGGTGTCCTCCATGCTTCAGCGGACCCC AGCACCCTGCTGAAGGTGTCCTCCATGCTTCAGAGGACCCC < 41bp 1 0.714341618544362 1 0.911722004413605 experiment 0.571316762911277 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24560499 chr22:24560512 synonymous SNV . 0 34 hm5C_associated_SNPs_28805 0 0 1 0 1 CABIN1 chr22:24560531 5'GT 24560531 Upstream 20bp
chr12 57599412 57599412 1 + A T LUSC 57599419 + 57599399 57599439 41 CGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGACGC CGGCCACCTCTGCTGCTGCGCTCGGAACTTCATGAAGACGC < 41bp 1 0.252288305351353 1 0.259578108787537 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599419 chr12:57599412 nonsynonymous SNV 0.999 4 14 hm5C_associated_SNPs_28806 0 0 0 0 2 LRP1 chr12:57599341 3'AG 57599341 Downstream 72bp
chr12 57599412 57599412 1 + A T LUSC 57599419 + 57599399 57599439 41 CGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGACGC CGGCCACCTCTGCTGCTGCGCTCGGAACTTCATGAAGACGC < 41bp 1 0.252288305351353 1 0.259578108787537 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599419 chr12:57599412 nonsynonymous SNV 0.999 4 14 hm5C_associated_SNPs_28806 0 0 0 0 2 LRP1 chr12:57599460 5'GT 57599460 Upstream 49bp
chr8 25323754 25323754 1 + G T LUSC 25323752 + 25323732 25323772 41 ACGAATATCAGCCTTCCAGTCAGCTTTTCACTCCATAAAGG ACGAATATCAGCCTTCCAGTCATCTTTTCACTCCATAAAGG < 41bp 1 0.101758552045022 1 0.120782822370529 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CDCA2 ENSG00000184661 CDS Human protein_coding chr8:25323752 chr8:25323754 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_28808 0 0 1 0 2 CDCA2 chr8:25323691 3'AG 25323691 Downstream 64bp
chr8 25323754 25323754 1 + G T LUSC 25323752 + 25323732 25323772 41 ACGAATATCAGCCTTCCAGTCAGCTTTTCACTCCATAAAGG ACGAATATCAGCCTTCCAGTCATCTTTTCACTCCATAAAGG < 41bp 1 0.101758552045022 1 0.120782822370529 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CDCA2 ENSG00000184661 CDS Human protein_coding chr8:25323752 chr8:25323754 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_28808 0 0 1 0 2 CDCA2 chr8:25323841 5'GT 25323841 Upstream 88bp
chr20 43545460 43545460 1 + G T LUSC 43545459 + 43545439 43545479 41 CATTTTGAGACCCATGAGGCCGCACAGCAGGCCATCAACAC CATTTTGAGACCCATGAGGCCTCACAGCAGGCCATCAACAC < 41bp 1 0.198485251841933 1 0.0210385918617249 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545459 chr20:43545460 nonsynonymous SNV 0.062 4 22 hm5C_associated_SNPs_28812 0 0 1 1 1 PABPC1L chr20:43545397 3'AG 43545397 Downstream 64bp
chr8 25323755 25323755 1 + C A LUSC 25323752 + 25323732 25323772 41 ACGAATATCAGCCTTCCAGTCAGCTTTTCACTCCATAAAGG ACGAATATCAGCCTTCCAGTCAGATTTTCACTCCATAAAGG < 41bp 1 0.248066139363682 1 0.474291384220123 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CDCA2 ENSG00000184661 CDS Human protein_coding chr8:25323752 chr8:25323755 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_28813 0 0 1 0 2 CDCA2 chr8:25323691 3'AG 25323691 Downstream 65bp
chr8 25323755 25323755 1 + C A LUSC 25323752 + 25323732 25323772 41 ACGAATATCAGCCTTCCAGTCAGCTTTTCACTCCATAAAGG ACGAATATCAGCCTTCCAGTCAGATTTTCACTCCATAAAGG < 41bp 1 0.248066139363682 1 0.474291384220123 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CDCA2 ENSG00000184661 CDS Human protein_coding chr8:25323752 chr8:25323755 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_28813 0 0 1 0 2 CDCA2 chr8:25323841 5'GT 25323841 Upstream 87bp
chr6 110059612 110059612 1 + G A LUSC 110059608 + 110059588 110059628 41 ATATAATTAAAAGTACTGTGCATCGTGACTGGCTTTTGTAT ATATAATTAAAAGTACTGTGCATCATGACTGGCTTTTGTAT < 41bp 1 0.157109209778778 1 0.0423125028610229 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FIG4 ENSG00000112367 CDS Human protein_coding chr6:110059608 chr6:110059612 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_28816 0 0 1 0 2 FIG4 chr6:110059528 3'AG 110059528 Downstream 85bp
chr6 110059612 110059612 1 + G A LUSC 110059608 + 110059588 110059628 41 ATATAATTAAAAGTACTGTGCATCGTGACTGGCTTTTGTAT ATATAATTAAAAGTACTGTGCATCATGACTGGCTTTTGTAT < 41bp 1 0.157109209778778 1 0.0423125028610229 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FIG4 ENSG00000112367 CDS Human protein_coding chr6:110059608 chr6:110059612 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_28816 0 0 1 0 2 FIG4 chr6:110059656 5'GT 110059656 Upstream 45bp
chr6 130381241 130381241 1 + G T LUSC 130381222 + 130381202 130381242 41 AAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGCGTGGA AAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGCGTGTA < 41bp 1 0.525213394661833 1 0.239803284406662 experiment 0.949573210676334 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130381222 chr6:130381241 nonsynonymous SNV 0.858 4 40 hm5C_associated_SNPs_28818 0 0 1 0 2 L3MBTL3 chr6:130381181 3'AG 130381181 Downstream 61bp
chr6 130381241 130381241 1 + G T LUSC 130381222 + 130381202 130381242 41 AAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGCGTGGA AAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGCGTGTA < 41bp 1 0.525213394661833 1 0.239803284406662 experiment 0.949573210676334 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130381222 chr6:130381241 nonsynonymous SNV 0.858 4 40 hm5C_associated_SNPs_28818 0 0 1 0 2 L3MBTL3 chr6:130381285 5'GT 130381285 Upstream 45bp
chr6 168363186 168363186 1 + G A LUSC 168363202 + 168363182 168363222 41 GCGAGGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG GCGAAGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG < 41bp 1 0.259682052764914 1 0.541389644145966 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363202 chr6:168363186 nonsynonymous SNV 0.017 1 5 hm5C_associated_SNPs_28819 0 0 1 0 3 AFDN chr6:168363113 3'AG 168363113 Downstream 74bp
chr6 168363186 168363186 1 + G A LUSC 168363202 + 168363182 168363222 41 GCGAGGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG GCGAAGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG < 41bp 1 0.259682052764914 1 0.541389644145966 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363202 chr6:168363186 nonsynonymous SNV 0.017 1 5 hm5C_associated_SNPs_28819 0 0 1 0 3 AFDN chr6:168363119 3'AG 168363119 Downstream 68bp
chr6 168363186 168363186 1 + G A LUSC 168363202 + 168363182 168363222 41 GCGAGGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG GCGAAGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG < 41bp 1 0.259682052764914 1 0.541389644145966 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363202 chr6:168363186 nonsynonymous SNV 0.017 1 5 hm5C_associated_SNPs_28819 0 0 1 0 3 AFDN chr6:168363247 5'GT 168363247 Upstream 62bp
chr5 179153748 179153748 1 + A G LUSC 179153756 + 179153736 179153776 41 GGAAGACAGAAAACCTAAAGCAGAGGTAAAGGAAAGGGGTC GGAAGACAGAAAGCCTAAAGCAGAGGTAAAGGAAAGGGGTC < 41bp 1 0.759197064232694 1 0.814807772636414 experiment 0.481605871534611 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179153756 chr5:179153748 synonymous SNV . 0 13 hm5C_associated_SNPs_28820 0 0 1 0 2 CANX chr5:179153681 3'AG 179153681 Downstream 68bp
chr5 179153748 179153748 1 + A G LUSC 179153756 + 179153736 179153776 41 GGAAGACAGAAAACCTAAAGCAGAGGTAAAGGAAAGGGGTC GGAAGACAGAAAGCCTAAAGCAGAGGTAAAGGAAAGGGGTC < 41bp 1 0.759197064232694 1 0.814807772636414 experiment 0.481605871534611 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179153756 chr5:179153748 synonymous SNV . 0 13 hm5C_associated_SNPs_28820 0 0 1 0 2 CANX chr5:179153760 5'GT 179153760 Upstream 13bp
chr1 55524240 55524240 1 + G A LUSC 55524235 + 55524215 55524255 41 GCCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAG GCCTACACGGATGGCCACAGCCGTCACCCGCTGCGCCCCAG < 41bp 1 0.108686586603327 1 0.130664527416229 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524235 chr1:55524240 nonsynonymous SNV 0.003 2 26 hm5C_associated_SNPs_28821 0 0 1 0 2 PCSK9 chr1:55524172 3'AG 55524172 Downstream 69bp
chr1 55524240 55524240 1 + G A LUSC 55524235 + 55524215 55524255 41 GCCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAG GCCTACACGGATGGCCACAGCCGTCACCCGCTGCGCCCCAG < 41bp 1 0.108686586603327 1 0.130664527416229 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524235 chr1:55524240 nonsynonymous SNV 0.003 2 26 hm5C_associated_SNPs_28821 0 0 1 0 2 PCSK9 chr1:55524320 5'GT 55524320 Upstream 81bp
chr1 55524240 55524240 1 + G A LUSC 55524236 + 55524216 55524256 41 CCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAGA CCTACACGGATGGCCACAGCCGTCACCCGCTGCGCCCCAGA < 41bp 1 0.661750148321785 1 0.413445472717285 experiment 0.676499703356431 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524236 chr1:55524240 nonsynonymous SNV 0.003 2 25 hm5C_associated_SNPs_28822 0 0 1 0 2 PCSK9 chr1:55524172 3'AG 55524172 Downstream 69bp
chr1 55524240 55524240 1 + G A LUSC 55524236 + 55524216 55524256 41 CCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAGA CCTACACGGATGGCCACAGCCGTCACCCGCTGCGCCCCAGA < 41bp 1 0.661750148321785 1 0.413445472717285 experiment 0.676499703356431 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524236 chr1:55524240 nonsynonymous SNV 0.003 2 25 hm5C_associated_SNPs_28822 0 0 1 0 2 PCSK9 chr1:55524320 5'GT 55524320 Upstream 81bp
chr22 32881142 32881142 1 + G A LUSC 32881149 + 32881129 32881169 41 TCCTCTCTGCGAGGGCAGCTCCGCTACTCTCACCTGTGTGC TCCTCTCTGCGAGAGCAGCTCCGCTACTCTCACCTGTGTGC < 41bp 1 0.39714249794176 1 0.109522312879562 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32881149 chr22:32881142 nonsynonymous SNV 0.942 1 14 hm5C_associated_SNPs_28824 0 0 1 0 2 FBXO7 chr22:32881055 3'AG 32881055 Downstream 88bp
chr22 32881142 32881142 1 + G A LUSC 32881149 + 32881129 32881169 41 TCCTCTCTGCGAGGGCAGCTCCGCTACTCTCACCTGTGTGC TCCTCTCTGCGAGAGCAGCTCCGCTACTCTCACCTGTGTGC < 41bp 1 0.39714249794176 1 0.109522312879562 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32881149 chr22:32881142 nonsynonymous SNV 0.942 1 14 hm5C_associated_SNPs_28824 0 0 1 0 2 FBXO7 chr22:32881196 5'GT 32881196 Upstream 55bp
chr16 22271802 22271802 1 + C T LUSC 22271796 + 22271776 22271816 41 TGCCCAGATTGGCCAGTGTTCAGTGACCTCGATAACATGGC TGCCCAGATTGGCCAGTGTTCAGTGATCTCGATAACATGGC < 41bp 1 0.405819127709882 1 0.428472995758057 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EEF2K ENSG00000103319 CDS Human protein_coding chr16:22271796 chr16:22271802 synonymous SNV . 0 27 hm5C_associated_SNPs_28827 0 0 1 0 2 EEF2K chr16:22271783 3'AG 22271783 Downstream 20bp
chr16 22271802 22271802 1 + C T LUSC 22271796 + 22271776 22271816 41 TGCCCAGATTGGCCAGTGTTCAGTGACCTCGATAACATGGC TGCCCAGATTGGCCAGTGTTCAGTGATCTCGATAACATGGC < 41bp 1 0.405819127709882 1 0.428472995758057 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EEF2K ENSG00000103319 CDS Human protein_coding chr16:22271796 chr16:22271802 synonymous SNV . 0 27 hm5C_associated_SNPs_28827 0 0 1 0 2 EEF2K chr16:22271850 5'GT 22271850 Upstream 49bp
chr2 27157544 27157544 1 + G A LUSC 27157542 + 27157522 27157562 41 CCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG CCACGCGGCTGCCTATGTCACGATGCCTCCCCTGAGACTGG < 41bp 1 0.254524592870026 1 0.777369737625122 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157542 chr2:27157544 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_28834 0 0 0 0 2 DPYSL5 chr2:27157446 3'AG 27157446 Downstream 99bp
chr2 27157544 27157544 1 + G A LUSC 27157542 + 27157522 27157562 41 CCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG CCACGCGGCTGCCTATGTCACGATGCCTCCCCTGAGACTGG < 41bp 1 0.254524592870026 1 0.777369737625122 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157542 chr2:27157544 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_28834 0 0 0 0 2 DPYSL5 chr2:27157602 5'GT 27157602 Upstream 59bp
chr4 57180260 57180260 1 + G C LUSC 57180277 + 57180257 57180297 41 AACGGACACCCAGGCGAGGACAAGCCAACGTGGCACGAAGA AACCGACACCCAGGCGAGGACAAGCCAACGTGGCACGAAGA < 41bp 1 0.366733790988337 1 0.545808672904968 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57180277 chr4:57180260 nonsynonymous SNV 0.889 3 4 hm5C_associated_SNPs_28837 0 0 0 0 1 KIAA1211 chr4:57180206 3'AG 57180206 Downstream 55bp
chr5 10417441 10417441 1 + G C LUSC 10417426 + 10417406 10417446 41 GTGCTGTTGGCTGGAGTTGTCCCTCTCCTTCTGGGGCTCCT GTGCTGTTGGCTGGAGTTGTCCCTCTCCTTCTGGGCCTCCT < 41bp 1 0.180667778000797 1 0.148254930973053 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10417426 chr5:10417441 synonymous SNV . 0 36 hm5C_associated_SNPs_28838 0 0 1 0 2 MARCH6 chr5:10417382 3'AG 10417382 Downstream 60bp
chr5 10417441 10417441 1 + G C LUSC 10417426 + 10417406 10417446 41 GTGCTGTTGGCTGGAGTTGTCCCTCTCCTTCTGGGGCTCCT GTGCTGTTGGCTGGAGTTGTCCCTCTCCTTCTGGGCCTCCT < 41bp 1 0.180667778000797 1 0.148254930973053 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10417426 chr5:10417441 synonymous SNV . 0 36 hm5C_associated_SNPs_28838 0 0 1 0 2 MARCH6 chr5:10417516 5'GT 10417516 Upstream 76bp
chr5 10417441 10417441 1 + G C LUSC 10417428 + 10417408 10417448 41 GCTGTTGGCTGGAGTTGTCCCTCTCCTTCTGGGGCTCCTGT GCTGTTGGCTGGAGTTGTCCCTCTCCTTCTGGGCCTCCTGT < 41bp 1 0.276218453880259 1 0.0991118848323822 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10417428 chr5:10417441 synonymous SNV . 0 34 hm5C_associated_SNPs_28839 0 0 1 0 2 MARCH6 chr5:10417382 3'AG 10417382 Downstream 60bp
chr5 10417441 10417441 1 + G C LUSC 10417428 + 10417408 10417448 41 GCTGTTGGCTGGAGTTGTCCCTCTCCTTCTGGGGCTCCTGT GCTGTTGGCTGGAGTTGTCCCTCTCCTTCTGGGCCTCCTGT < 41bp 1 0.276218453880259 1 0.0991118848323822 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10417428 chr5:10417441 synonymous SNV . 0 34 hm5C_associated_SNPs_28839 0 0 1 0 2 MARCH6 chr5:10417516 5'GT 10417516 Upstream 76bp
chr11 94554932 94554932 1 + G C LUSC 94554949 + 94554929 94554969 41 ACCGGGTGCTTCACCAGGAACTTCAGGGTTACTACGACAAT ACCCGGTGCTTCACCAGGAACTTCAGGGTTACTACGACAAT < 41bp 1 0.322952717085408 1 0.0810353755950928 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94554949 chr11:94554932 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_28840 0 0 1 0 1 AMOTL1 chr11:94554987 5'GT 94554987 Upstream 56bp
chr17 48595046 48595046 1 + G A LUSC 48595045 + 48595025 48595065 41 TTAAGAGAATTGCACTTGCTCGAGGGAACACCCAGGTTTGT TTAAGAGAATTGCACTTGCTCAAGGGAACACCCAGGTTTGT < 41bp 1 0.710991628677904 1 0.766703128814697 experiment 0.578016742644192 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MYCBPAP ENSG00000136449 CDS Human protein_coding chr17:48595045 chr17:48595046 nonsynonymous SNV 0.977 0 22 hm5C_associated_SNPs_28844 0 0 0 0 2 MYCBPAP chr17:48594956 3'AG 48594956 Downstream 91bp
chr17 48595046 48595046 1 + G A LUSC 48595045 + 48595025 48595065 41 TTAAGAGAATTGCACTTGCTCGAGGGAACACCCAGGTTTGT TTAAGAGAATTGCACTTGCTCAAGGGAACACCCAGGTTTGT < 41bp 1 0.710991628677904 1 0.766703128814697 experiment 0.578016742644192 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MYCBPAP ENSG00000136449 CDS Human protein_coding chr17:48595045 chr17:48595046 nonsynonymous SNV 0.977 0 22 hm5C_associated_SNPs_28844 0 0 0 0 2 MYCBPAP chr17:48595059 5'GT 48595059 Upstream 14bp
chr6 160448238 160448238 1 + C G LUSC 160448218 + 160448198 160448238 41 TGTAATACATGATTTTCAGACACACTACGAGACCCAGGTTC TGTAATACATGATTTTCAGACACACTACGAGACCCAGGTTG < 41bp 1 0.11560686549958 1 0.166890859603882 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160448218 chr6:160448238 stopgain 0.019 0 41 hm5C_associated_SNPs_28845 0 0 1 0 1 IGF2R chr6:160448217 3'AG 160448217 Downstream 22bp
chr3 16312549 16312549 1 + C T LUSC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTTAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.270730204384131 1 0.114330470561981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312549 synonymous SNV . 0 8 hm5C_associated_SNPs_28846 0 0 0 19 2 OXNAD1 chr3:16312452 3'AG 16312452 Downstream 98bp
chr3 16312549 16312549 1 + C T LUSC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTTAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.270730204384131 1 0.114330470561981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312549 synonymous SNV . 0 8 hm5C_associated_SNPs_28846 0 0 0 19 2 OXNAD1 chr3:16312578 5'GT 16312578 Upstream 30bp
chrX 70674030 70674030 1 + T A LUSC 70674049 + 70674029 70674069 41 GTCAGTATACTAAGACTGCCCAGGAGATTGTGAACGTCTGT GACAGTATACTAAGACTGCCCAGGAGATTGTGAACGTCTGT < 41bp 1 0.569987763409717 1 0.853201925754547 experiment 0.860024473180566 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF1 ENSG00000147133 CDS Human protein_coding chrX:70674049 chrX:70674030 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_28847 0 0 1 0 2 TAF1 chrX:70674020 3'AG 70674020 Downstream 11bp
chrX 70674030 70674030 1 + T A LUSC 70674049 + 70674029 70674069 41 GTCAGTATACTAAGACTGCCCAGGAGATTGTGAACGTCTGT GACAGTATACTAAGACTGCCCAGGAGATTGTGAACGTCTGT < 41bp 1 0.569987763409717 1 0.853201925754547 experiment 0.860024473180566 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF1 ENSG00000147133 CDS Human protein_coding chrX:70674049 chrX:70674030 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_28847 0 0 1 0 2 TAF1 chrX:70674087 5'GT 70674087 Upstream 58bp
chr20 368895 368895 1 + C T LUSC 368903 + 368883 368923 41 GAGGAGGGCGGGCGGGCCTACCAGGCCCTGCACTGCCCTAC GAGGAGGGCGGGTGGGCCTACCAGGCCCTGCACTGCCCTAC < 41bp 1 0.70660847078521 1 0.842365562915802 experiment 0.58678305842958 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIB3 ENSG00000101255 CDS Human protein_coding chr20:368903 chr20:368895 nonsynonymous SNV 0.001 2 13 hm5C_associated_SNPs_28848 0 0 1 0 1 TRIB3 chr20:368945 5'GT 368945 Upstream 51bp
chr20 368895 368895 1 + C T LUSC 368904 + 368884 368924 41 AGGAGGGCGGGCGGGCCTACCAGGCCCTGCACTGCCCTACA AGGAGGGCGGGTGGGCCTACCAGGCCCTGCACTGCCCTACA < 41bp 1 0.796786931844033 1 0.951438784599304 experiment 0.406426136311933 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIB3 ENSG00000101255 CDS Human protein_coding chr20:368904 chr20:368895 nonsynonymous SNV 0.001 2 12 hm5C_associated_SNPs_28849 0 0 1 0 1 TRIB3 chr20:368945 5'GT 368945 Upstream 51bp
chr11 73941323 73941323 1 + G T LUSC 73941327 + 73941307 73941347 41 TTGAAGCCATGTATGGGGACCTTCCTCCTCCAATTATGCTG TTGAAGCCATGTATGGTGACCTTCCTCCTCCAATTATGCTG < 41bp 1 0.0922773158296111 1 0.0301957130432129 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PPME1 ENSG00000214517 CDS Human protein_coding chr11:73941327 chr11:73941323 synonymous SNV . 0 17 hm5C_associated_SNPs_28855 0 0 1 0 1 PPME1 chr11:73941290 3'AG 73941290 Downstream 34bp
chr13 111111228 111111228 1 + G A LUSC 111111217 + 111111197 111111237 41 CGCAGGCATCAACGGGGAGCCGGGGAGGAAAGGGGACAGAG CGCAGGCATCAACGGGGAGCCGGGGAGGAAAAGGGACAGAG < 41bp 1 0.696590157044176 1 0.800029039382935 experiment 0.606819685911648 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111217 chr13:111111228 nonsynonymous SNV 0.314 5 32 hm5C_associated_SNPs_28856 0 0 0 0 1 COL4A2 chr13:111111281 5'GT 111111281 Upstream 54bp
chr12 21205109 21205109 1 + G T LUSC 21205114 + 21205094 21205134 41 GATGAAAGTCAATGGGAACCCGTCTGTGGAAACAATGGAAT GATGAAAGTCAATGGTAACCCGTCTGTGGAAACAATGGAAT < 41bp 1 0.395770292688886 1 0.114171326160431 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21205114 chr12:21205109 stopgain 0.961 1 16 hm5C_associated_SNPs_28860 0 0 0 0 2 SLCO1B7 chr12:21205030 3'AG 21205030 Downstream 80bp
chr12 21205109 21205109 1 + G T LUSC 21205114 + 21205094 21205134 41 GATGAAAGTCAATGGGAACCCGTCTGTGGAAACAATGGAAT GATGAAAGTCAATGGTAACCCGTCTGTGGAAACAATGGAAT < 41bp 1 0.395770292688886 1 0.114171326160431 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21205114 chr12:21205109 stopgain 0.961 1 16 hm5C_associated_SNPs_28860 0 0 0 0 2 SLCO1B7 chr12:21205195 5'GT 21205195 Upstream 87bp
chr19 19638849 19638849 1 + G T LUSC 19638852 + 19638832 19638872 41 TCCACACAACCCGCTGGGTGCCCCCCTTGATCGGGGAGCTG TCCACACAACCCGCTGGTTGCCCCCCTTGATCGGGGAGCTG < 41bp 1 0.185788000397514 1 0.025438517332077 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19638852 chr19:19638849 nonsynonymous SNV 0.428 2 18 hm5C_associated_SNPs_28861 0 0 1 0 2 NDUFA13 chr19:19638816 3'AG 19638816 Downstream 34bp
chr19 19638849 19638849 1 + G T LUSC 19638852 + 19638832 19638872 41 TCCACACAACCCGCTGGGTGCCCCCCTTGATCGGGGAGCTG TCCACACAACCCGCTGGTTGCCCCCCTTGATCGGGGAGCTG < 41bp 1 0.185788000397514 1 0.025438517332077 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19638852 chr19:19638849 nonsynonymous SNV 0.428 2 18 hm5C_associated_SNPs_28861 0 0 1 0 2 NDUFA13 chr19:19638925 5'GT 19638925 Upstream 77bp
chr12 57906114 57906114 1 + G A LUSC 57906095 + 57906075 57906115 41 TCCTTGCTCAGCCCTAGGAGCTGAGGATAACTATACCTTGG TCCTTGCTCAGCCCTAGGAGCTGAGGATAACTATACCTTAG < 41bp 1 0.551353568465031 1 0.366989970207214 experiment 0.897292863069938 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARS ENSG00000166986 CDS Human protein_coding chr12:57906095 chr12:57906114 synonymous SNV . 0 40 hm5C_associated_SNPs_28862 0 0 1 0 3 MARS chr12:57906019 3'AG 57906019 Downstream 96bp
chr12 57906114 57906114 1 + G A LUSC 57906095 + 57906075 57906115 41 TCCTTGCTCAGCCCTAGGAGCTGAGGATAACTATACCTTGG TCCTTGCTCAGCCCTAGGAGCTGAGGATAACTATACCTTAG < 41bp 1 0.551353568465031 1 0.366989970207214 experiment 0.897292863069938 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARS ENSG00000166986 CDS Human protein_coding chr12:57906095 chr12:57906114 synonymous SNV . 0 40 hm5C_associated_SNPs_28862 0 0 1 0 3 MARS chr12:57906086 3'AG 57906086 Downstream 29bp
chr12 57906114 57906114 1 + G A LUSC 57906095 + 57906075 57906115 41 TCCTTGCTCAGCCCTAGGAGCTGAGGATAACTATACCTTGG TCCTTGCTCAGCCCTAGGAGCTGAGGATAACTATACCTTAG < 41bp 1 0.551353568465031 1 0.366989970207214 experiment 0.897292863069938 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARS ENSG00000166986 CDS Human protein_coding chr12:57906095 chr12:57906114 synonymous SNV . 0 40 hm5C_associated_SNPs_28862 0 0 1 0 3 MARS chr12:57906136 5'GT 57906136 Upstream 23bp
chr15 66777515 66777515 1 + G T LUSC 66777521 + 66777501 66777541 41 GCCAAGGACCCCCGGGAGGCCCCTTAGCTGTGAGTAGCCTG GCCAAGGACCCCCGTGAGGCCCCTTAGCTGTGAGTAGCCTG < 41bp 1 0.159368500529484 1 0.0420305728912354 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP2K1 ENSG00000169032 CDS Human protein_coding chr15:66777521 chr15:66777515 nonsynonymous SNV 0.888 2 15 hm5C_associated_SNPs_28863 0 0 1 0 1 MAP2K1 chr15:66777529 5'GT 66777529 Upstream 15bp
chr17 1636833 1636833 1 + G A LUSC 1636828 + 1636808 1636848 41 CACTCCTATCCAGGTGACATCATCCGGAAAATCATCCCCAA CACTCCTATCCAGGTGACATCATCCAGAAAATCATCCCCAA < 41bp 1 0.0920919844166165 1 0.506525814533234 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1636828 chr17:1636833 nonsynonymous SNV 0.999 0 26 hm5C_associated_SNPs_28864 0 0 0 0 1 WDR81 chr17:1636821 3'AG 1636821 Downstream 13bp
chr17 57754397 57754397 1 + A G LUSC 57754417 + 57754397 57754437 41 ATCTACATAGACAGTAATAACAACCCGGAGAGATTTCTTCG GTCTACATAGACAGTAATAACAACCCGGAGAGATTTCTTCG < 41bp 1 0.270781997843635 1 0.141256004571915 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57754417 chr17:57754397 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_28865 0 0 1 0 1 CLTC chr17:57754315 3'AG 57754315 Downstream 83bp
chr3 172052825 172052825 1 + C T LUSC 172052840 + 172052820 172052860 41 CAGACCGCTTGTCAAAGGCCCAGTTACATCTCATGGCTTTA CAGACTGCTTGTCAAAGGCCCAGTTACATCTCATGGCTTTA < 41bp 1 0.0645632917076245 1 0.04752317070961 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172052840 chr3:172052825 nonsynonymous SNV 0.801 2 6 hm5C_associated_SNPs_28867 0 0 0 0 2 FNDC3B chr3:172052734 3'AG 172052734 Downstream 92bp
chr3 172052825 172052825 1 + C T LUSC 172052840 + 172052820 172052860 41 CAGACCGCTTGTCAAAGGCCCAGTTACATCTCATGGCTTTA CAGACTGCTTGTCAAAGGCCCAGTTACATCTCATGGCTTTA < 41bp 1 0.0645632917076245 1 0.04752317070961 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172052840 chr3:172052825 nonsynonymous SNV 0.801 2 6 hm5C_associated_SNPs_28867 0 0 0 0 2 FNDC3B chr3:172052872 5'GT 172052872 Upstream 48bp
chr7 44797501 44797501 1 + G C LUSC 44797498 + 44797478 44797518 41 TTCTGCAGCATGGAGGTCCCCGGGGGCCTAGTGTCCCCGCT TTCTGCAGCATGGAGGTCCCCGGCGGCCTAGTGTCCCCGCT < 41bp 1 0.788733639881204 1 0.808510899543762 experiment 0.422532720237593 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44797498 chr7:44797501 nonsynonymous SNV 0.335 4 24 hm5C_associated_SNPs_28868 0 0 1 0 1 ZMIZ2 chr7:44797447 3'AG 44797447 Downstream 55bp
chr1 248039255 248039255 1 + G T LUSC 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGAGTCTGCTCTTGACCGCCTACCTGCGCAGTGTGCA < 41bp 1 0.505025411352356 1 0.0982820391654968 experiment 0.989949177295287 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039255 nonsynonymous SNV 0.001 4 25 hm5C_associated_SNPs_28869 0 0 0 0 2 TRIM58 chr1:248039202 3'AG 248039202 Downstream 54bp
chr1 248039255 248039255 1 + G T LUSC 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGAGTCTGCTCTTGACCGCCTACCTGCGCAGTGTGCA < 41bp 1 0.505025411352356 1 0.0982820391654968 experiment 0.989949177295287 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039255 nonsynonymous SNV 0.001 4 25 hm5C_associated_SNPs_28869 0 0 0 0 2 TRIM58 chr1:248039339 5'GT 248039339 Upstream 85bp
chr1 76253234 76253234 1 + T C LUSC 76253245 + 76253225 76253265 41 ACACTTTGTTATTGGAGAAACATGCAGATTATATCGCATCC ACACTTTGTCATTGGAGAAACATGCAGATTATATCGCATCC < 41bp 1 0.325650325662561 1 0.342195987701416 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76253245 chr1:76253234 nonsynonymous SNV 0.171 1 10 hm5C_associated_SNPs_28871 0 0 1 0 2 RABGGTB chr1:76253182 3'AG 76253182 Downstream 53bp
chr1 76253234 76253234 1 + T C LUSC 76253245 + 76253225 76253265 41 ACACTTTGTTATTGGAGAAACATGCAGATTATATCGCATCC ACACTTTGTCATTGGAGAAACATGCAGATTATATCGCATCC < 41bp 1 0.325650325662561 1 0.342195987701416 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76253245 chr1:76253234 nonsynonymous SNV 0.171 1 10 hm5C_associated_SNPs_28871 0 0 1 0 2 RABGGTB chr1:76253289 5'GT 76253289 Upstream 56bp
chr3 148562331 148562331 1 + C A LUSC 148562312 + 148562292 148562332 41 CAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGTCCT CAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGTCAT < 41bp 1 0.475731757738845 1 0.109226435422897 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562312 chr3:148562331 nonsynonymous SNV 0.993 2 40 hm5C_associated_SNPs_28872 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 67bp
chr3 148562331 148562331 1 + C A LUSC 148562312 + 148562292 148562332 41 CAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGTCCT CAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGTCAT < 41bp 1 0.475731757738845 1 0.109226435422897 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562312 chr3:148562331 nonsynonymous SNV 0.993 2 40 hm5C_associated_SNPs_28872 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 45bp
chr3 148562331 148562331 1 + C A LUSC 148562321 + 148562301 148562341 41 GAGCTTCTCGACAAGTTAGACTTTTATGTCCTGCCTGTGCT GAGCTTCTCGACAAGTTAGACTTTTATGTCATGCCTGTGCT < 41bp 1 0.102253458898451 1 0.0437421202659607 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562321 chr3:148562331 nonsynonymous SNV 0.993 2 31 hm5C_associated_SNPs_28873 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 67bp
chr3 148562331 148562331 1 + C A LUSC 148562321 + 148562301 148562341 41 GAGCTTCTCGACAAGTTAGACTTTTATGTCCTGCCTGTGCT GAGCTTCTCGACAAGTTAGACTTTTATGTCATGCCTGTGCT < 41bp 1 0.102253458898451 1 0.0437421202659607 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562321 chr3:148562331 nonsynonymous SNV 0.993 2 31 hm5C_associated_SNPs_28873 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 45bp
chr3 148562331 148562331 1 + C A LUSC 148562330 + 148562310 148562350 41 GACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGA GACAAGTTAGACTTTTATGTCATGCCTGTGCTCAATATTGA < 41bp 1 0.217234132863478 1 0.0301330983638763 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562330 chr3:148562331 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_28874 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 67bp
chr3 148562331 148562331 1 + C A LUSC 148562330 + 148562310 148562350 41 GACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGA GACAAGTTAGACTTTTATGTCATGCCTGTGCTCAATATTGA < 41bp 1 0.217234132863478 1 0.0301330983638763 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562330 chr3:148562331 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_28874 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 45bp
chr3 148562331 148562331 1 + C A LUSC 148562334 + 148562314 148562354 41 AGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGC AGTTAGACTTTTATGTCATGCCTGTGCTCAATATTGATGGC < 41bp 1 0.16968144653196 1 0.0438001453876495 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562334 chr3:148562331 nonsynonymous SNV 0.993 2 18 hm5C_associated_SNPs_28875 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 67bp
chr3 148562331 148562331 1 + C A LUSC 148562334 + 148562314 148562354 41 AGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGC AGTTAGACTTTTATGTCATGCCTGTGCTCAATATTGATGGC < 41bp 1 0.16968144653196 1 0.0438001453876495 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562334 chr3:148562331 nonsynonymous SNV 0.993 2 18 hm5C_associated_SNPs_28875 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 45bp
chr3 148562331 148562331 1 + C A LUSC 148562335 + 148562315 148562355 41 GTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGCT GTTAGACTTTTATGTCATGCCTGTGCTCAATATTGATGGCT < 41bp 1 0.40216679018037 1 0.163502216339111 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562335 chr3:148562331 nonsynonymous SNV 0.993 2 17 hm5C_associated_SNPs_28876 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 67bp
chr3 148562331 148562331 1 + C A LUSC 148562335 + 148562315 148562355 41 GTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGCT GTTAGACTTTTATGTCATGCCTGTGCTCAATATTGATGGCT < 41bp 1 0.40216679018037 1 0.163502216339111 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562335 chr3:148562331 nonsynonymous SNV 0.993 2 17 hm5C_associated_SNPs_28876 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 45bp
chr3 148562331 148562331 1 + C A LUSC 148562340 + 148562320 148562360 41 ACTTTTATGTCCTGCCTGTGCTCAATATTGATGGCTACATC ACTTTTATGTCATGCCTGTGCTCAATATTGATGGCTACATC < 41bp 1 0.764703305932428 1 0.13333535194397 experiment 0.470593388135144 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562340 chr3:148562331 nonsynonymous SNV 0.993 2 12 hm5C_associated_SNPs_28877 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 67bp
chr3 148562331 148562331 1 + C A LUSC 148562340 + 148562320 148562360 41 ACTTTTATGTCCTGCCTGTGCTCAATATTGATGGCTACATC ACTTTTATGTCATGCCTGTGCTCAATATTGATGGCTACATC < 41bp 1 0.764703305932428 1 0.13333535194397 experiment 0.470593388135144 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562340 chr3:148562331 nonsynonymous SNV 0.993 2 12 hm5C_associated_SNPs_28877 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 45bp
chr3 148562331 148562331 1 + C A LUSC 148562342 + 148562322 148562362 41 TTTTATGTCCTGCCTGTGCTCAATATTGATGGCTACATCTA TTTTATGTCATGCCTGTGCTCAATATTGATGGCTACATCTA < 41bp 1 0.657269326749541 1 0.125762820243835 experiment 0.685461346500918 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562342 chr3:148562331 nonsynonymous SNV 0.993 2 10 hm5C_associated_SNPs_28878 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 67bp
chr3 148562331 148562331 1 + C A LUSC 148562342 + 148562322 148562362 41 TTTTATGTCCTGCCTGTGCTCAATATTGATGGCTACATCTA TTTTATGTCATGCCTGTGCTCAATATTGATGGCTACATCTA < 41bp 1 0.657269326749541 1 0.125762820243835 experiment 0.685461346500918 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562342 chr3:148562331 nonsynonymous SNV 0.993 2 10 hm5C_associated_SNPs_28878 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 45bp
chr11 134244114 134244114 1 + C T LUSC 134244119 + 134244099 134244139 41 GGGTAGCTTGTCCATCAGCTCCACCCCTTGTGACACCTTTC GGGTAGCTTGTCCATTAGCTCCACCCCTTGTGACACCTTTC < 41bp 1 0.0467634598487645 1 0.0543158650398254 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134244119 chr11:134244114 synonymous SNV . 0 16 hm5C_associated_SNPs_28880 0 0 1 0 2 GLB1L2 chr11:134244039 3'AG 134244039 Downstream 76bp
chr11 134244114 134244114 1 + C T LUSC 134244119 + 134244099 134244139 41 GGGTAGCTTGTCCATCAGCTCCACCCCTTGTGACACCTTTC GGGTAGCTTGTCCATTAGCTCCACCCCTTGTGACACCTTTC < 41bp 1 0.0467634598487645 1 0.0543158650398254 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134244119 chr11:134244114 synonymous SNV . 0 16 hm5C_associated_SNPs_28880 0 0 1 0 2 GLB1L2 chr11:134244150 5'GT 134244150 Upstream 37bp
chr6 107824935 107824935 1 + G C LUSC 107824953 + 107824933 107824973 41 GAGGATATTGAATTCAGGAGCTACCCTACAGATGGGGAGAG GACGATATTGAATTCAGGAGCTACCCTACAGATGGGGAGAG < 41bp 1 0.130149477240933 1 0.221783071756363 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SOBP ENSG00000112320 CDS Human protein_coding chr6:107824953 chr6:107824935 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_28882 0 0 1 0 2 SOBP chr6:107824861 3'AG 107824861 Downstream 75bp
chr6 107824935 107824935 1 + G C LUSC 107824953 + 107824933 107824973 41 GAGGATATTGAATTCAGGAGCTACCCTACAGATGGGGAGAG GACGATATTGAATTCAGGAGCTACCCTACAGATGGGGAGAG < 41bp 1 0.130149477240933 1 0.221783071756363 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SOBP ENSG00000112320 CDS Human protein_coding chr6:107824953 chr6:107824935 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_28882 0 0 1 0 2 SOBP chr6:107824999 5'GT 107824999 Upstream 65bp
chrX 128722174 128722174 1 + C T LUSC 128722162 + 128722142 128722182 41 GACTTCTTTGGTAGGAGGACCTGTTCCAGACCCCTGGAATG GACTTCTTTGGTAGGAGGACCTGTTCCAGACCTCTGGAATG < 41bp 1 0.107020779727766 1 0.0611771047115326 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128722162 chrX:128722174 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_28883 0 0 1 0 2 OCRL chrX:128722156 3'AG 128722156 Downstream 19bp
chrX 128722174 128722174 1 + C T LUSC 128722162 + 128722142 128722182 41 GACTTCTTTGGTAGGAGGACCTGTTCCAGACCCCTGGAATG GACTTCTTTGGTAGGAGGACCTGTTCCAGACCTCTGGAATG < 41bp 1 0.107020779727766 1 0.0611771047115326 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128722162 chrX:128722174 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_28883 0 0 1 0 2 OCRL chrX:128722240 5'GT 128722240 Upstream 67bp
chr13 114203835 114203835 1 + G A LUSC 114203825 + 114203805 114203845 41 TGCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCA TGCAATCACGAGGTGTGTGCCCAGACCGGAAAGACGGTCCA < 41bp 1 0.716929725895832 1 0.141877919435501 experiment 0.566140548208335 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114203825 chr13:114203835 synonymous SNV . 0 31 hm5C_associated_SNPs_28892 0 0 0 0 1 TMCO3 chr13:114203740 3'AG 114203740 Downstream 96bp
chr13 114203835 114203835 1 + G A LUSC 114203826 + 114203806 114203846 41 GCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCAG GCAATCACGAGGTGTGTGCCCAGACCGGAAAGACGGTCCAG < 41bp 1 0.634392957866862 1 0.256246149539948 experiment 0.731214084266277 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114203826 chr13:114203835 synonymous SNV . 0 30 hm5C_associated_SNPs_28893 0 0 0 0 1 TMCO3 chr13:114203740 3'AG 114203740 Downstream 96bp
chr5 6746348 6746348 1 + C T LUSC 6746347 + 6746327 6746367 41 TTGCATCCAAGAATTGATGCCCGGAGAGCTGATGAAAACCT TTGCATCCAAGAATTGATGCCTGGAGAGCTGATGAAAACCT < 41bp 1 0.672736492502712 1 0.436759859323502 experiment 0.654527014994576 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6746347 chr5:6746348 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_28895 0 0 1 0 1 PAPD7 chr5:6746327 3'AG 6746327 Downstream 22bp
chr6 139487474 139487474 1 + G C LUSC 139487463 + 139487443 139487483 41 GATCTGCAGCTTCGGTAGGCCGGTGGACCTGGAGAAGGACG GATCTGCAGCTTCGGTAGGCCGGTGGACCTGCAGAAGGACG < 41bp 1 0.539541058431216 1 0.425220668315887 experiment 0.920917883137567 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECA ENSG00000112406 CDS Human protein_coding chr6:139487463 chr6:139487474 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_28897 0 0 1 0 1 HECA chr6:139487421 3'AG 139487421 Downstream 54bp
chr1 164789349 164789349 1 + G T LUSC 164789352 + 164789332 164789372 41 TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA TCAAACTCTGGAGATTTTTTCATGAGCGTGCAGTCACTCAA < 41bp 1 0.696878033424916 1 0.351151257753372 experiment 0.606243933150169 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789352 chr1:164789349 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_28898 0 0 1 0 2 PBX1 chr1:164789309 3'AG 164789309 Downstream 41bp
chr1 164789349 164789349 1 + G T LUSC 164789352 + 164789332 164789372 41 TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA TCAAACTCTGGAGATTTTTTCATGAGCGTGCAGTCACTCAA < 41bp 1 0.696878033424916 1 0.351151257753372 experiment 0.606243933150169 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789352 chr1:164789349 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_28898 0 0 1 0 2 PBX1 chr1:164789421 5'GT 164789421 Upstream 73bp
chr1 28861645 28861645 1 + A G LUSC 28861637 + 28861617 28861657 41 TGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGCCTCA TGCAGGTGCAGCTGGATGTGCCTGTGGTGAAGGTGGCCTCA < 41bp 1 0.291721331519084 1 0.131896913051605 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28861637 chr1:28861645 synonymous SNV . 0 29 hm5C_associated_SNPs_28902 0 0 1 0 2 RCC1 chr1:28861562 3'AG 28861562 Downstream 84bp
chr1 28861645 28861645 1 + A G LUSC 28861637 + 28861617 28861657 41 TGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGCCTCA TGCAGGTGCAGCTGGATGTGCCTGTGGTGAAGGTGGCCTCA < 41bp 1 0.291721331519084 1 0.131896913051605 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28861637 chr1:28861645 synonymous SNV . 0 29 hm5C_associated_SNPs_28902 0 0 1 0 2 RCC1 chr1:28861658 5'GT 28861658 Upstream 14bp
chr12 101674928 101674928 1 + A T LUSC 101674915 + 101674895 101674935 41 TTCTTACATTTGCTGAACGACTGGGGAATGTTAATATTGAT TTCTTACATTTGCTGAACGACTGGGGAATGTTATTATTGAT < 41bp 1 0.385056135464882 1 0.23149362206459 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101674915 chr12:101674928 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_28903 0 0 1 0 2 UTP20 chr12:101674894 3'AG 101674894 Downstream 35bp
chr12 101674928 101674928 1 + A T LUSC 101674915 + 101674895 101674935 41 TTCTTACATTTGCTGAACGACTGGGGAATGTTAATATTGAT TTCTTACATTTGCTGAACGACTGGGGAATGTTATTATTGAT < 41bp 1 0.385056135464882 1 0.23149362206459 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101674915 chr12:101674928 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_28903 0 0 1 0 2 UTP20 chr12:101674974 5'GT 101674974 Upstream 47bp
chr20 39741497 39741497 1 + C A LUSC 39741484 + 39741464 39741504 41 AAAAAATGTGTGGACAAGATCCGGAACCAGTATCGAGAAGA AAAAAATGTGTGGACAAGATCCGGAACCAGTATAGAGAAGA < 41bp 1 0.720380436987841 1 0.292943894863129 experiment 0.559239126024317 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39741484 chr20:39741497 synonymous SNV . 0 34 hm5C_associated_SNPs_28906 0 0 1 0 1 TOP1 chr20:39741565 5'GT 39741565 Upstream 69bp
chr5 1034405 1034405 1 + C T LUSC 1034388 + 1034368 1034408 41 TCGGTGGAGGAGGACGACCGCCAGGAGTGGACGTTCACGCT TCGGTGGAGGAGGACGACCGCCAGGAGTGGACGTTCATGCT < 41bp 1 0.348519981719394 1 0.4992735683918 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1034388 chr5:1034405 nonsynonymous SNV 0.250 4 38 hm5C_associated_SNPs_28907 0 0 0 0 2 NKD2 chr5:1034350 3'AG 1034350 Downstream 56bp
chr5 1034405 1034405 1 + C T LUSC 1034388 + 1034368 1034408 41 TCGGTGGAGGAGGACGACCGCCAGGAGTGGACGTTCACGCT TCGGTGGAGGAGGACGACCGCCAGGAGTGGACGTTCATGCT < 41bp 1 0.348519981719394 1 0.4992735683918 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1034388 chr5:1034405 nonsynonymous SNV 0.250 4 38 hm5C_associated_SNPs_28907 0 0 0 0 2 NKD2 chr5:1034445 5'GT 1034445 Upstream 41bp
chr11 63719960 63719960 1 + G T LUSC 63719969 + 63719949 63719989 41 TACCTCATCGCGTGGGAAAACAGCTCCGTCCCTGTTGCCTT TACCTCATCGCTTGGGAAAACAGCTCCGTCCCTGTTGCCTT < 41bp 1 0.575934282694542 1 0.571203827857971 experiment 0.848131434610916 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAA40 ENSG00000110583 CDS Human protein_coding chr11:63719969 chr11:63719960 synonymous SNV . 0 12 hm5C_associated_SNPs_28909 0 0 1 0 2 NAA40 chr11:63719879 3'AG 63719879 Downstream 82bp
chr11 63719960 63719960 1 + G T LUSC 63719969 + 63719949 63719989 41 TACCTCATCGCGTGGGAAAACAGCTCCGTCCCTGTTGCCTT TACCTCATCGCTTGGGAAAACAGCTCCGTCCCTGTTGCCTT < 41bp 1 0.575934282694542 1 0.571203827857971 experiment 0.848131434610916 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAA40 ENSG00000110583 CDS Human protein_coding chr11:63719969 chr11:63719960 synonymous SNV . 0 12 hm5C_associated_SNPs_28909 0 0 1 0 2 NAA40 chr11:63720037 5'GT 63720037 Upstream 78bp
chr19 44341220 44341220 1 + A T LUSC 44341234 + 44341214 44341254 41 ACATTCAGGGATGTGGCCATCGACTTCTCTCAGGAGGAGTG ACATTCTGGGATGTGGCCATCGACTTCTCTCAGGAGGAGTG < 41bp 1 0.448859878452998 1 0.126212120056152 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44341234 chr19:44341220 nonsynonymous SNV 0.999 3 7 hm5C_associated_SNPs_28910 0 0 1 0 1 ZNF283 chr19:44341205 3'AG 44341205 Downstream 16bp
chr3 142408614 142408614 1 + A G LUSC 142408604 + 142408584 142408624 41 CTAATTTGTTTAACACATACCCGTGCCTGCACAAGCCGAAT CTAATTTGTTTAACACATACCCGTGCCTGCGCAAGCCGAAT < 41bp 1 0.112690360227446 1 0.131211519241333 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PLS1 ENSG00000120756 CDS Human protein_coding chr3:142408604 chr3:142408614 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_28911 0 0 0 0 1 PLS1 chr3:142408655 5'GT 142408655 Upstream 42bp
chr17 72239531 72239531 1 + G T LUSC 72239546 + 72239526 72239566 41 CTCCTGCTCTTTATCCTGGACCTGGTCATCTGCCTCATTGC CTCCTTCTCTTTATCCTGGACCTGGTCATCTGCCTCATTGC < 41bp 1 0.13602454827227 1 0.0723492205142975 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72239546 chr17:72239531 synonymous SNV . 0 6 hm5C_associated_SNPs_28912 0 0 0 0 2 TTYH2 chr17:72239513 3'AG 72239513 Downstream 19bp
chr17 72239531 72239531 1 + G T LUSC 72239546 + 72239526 72239566 41 CTCCTGCTCTTTATCCTGGACCTGGTCATCTGCCTCATTGC CTCCTTCTCTTTATCCTGGACCTGGTCATCTGCCTCATTGC < 41bp 1 0.13602454827227 1 0.0723492205142975 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72239546 chr17:72239531 synonymous SNV . 0 6 hm5C_associated_SNPs_28912 0 0 0 0 2 TTYH2 chr17:72239608 5'GT 72239608 Upstream 78bp
chr3 47374703 47374703 1 + C T LUSC 47374698 + 47374678 47374718 41 ACGACCGGGAGCAGAGGGGTCCCTACCTGCCTGAGCTGCTG ACGACCGGGAGCAGAGGGGTCCCTATCTGCCTGAGCTGCTG < 41bp 1 0.397797878317732 1 0.123991638422012 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47374698 chr3:47374703 synonymous SNV . 0 26 hm5C_associated_SNPs_28913 0 0 1 0 1 KLHL18 chr3:47374647 3'AG 47374647 Downstream 57bp
chr12 69119569 69119569 1 + C T LUSC 69119560 + 69119540 69119580 41 ATAGTTCAAAAGTTTCTTATCCTGGGAGACATTGATGGTAA ATAGTTCAAAAGTTTCTTATCCTGGGAGATATTGATGGTAA < 41bp 1 0.32672629320843 1 0.476724594831467 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69119560 chr12:69119569 synonymous SNV . 0 30 hm5C_associated_SNPs_28914 0 0 1 0 2 NUP107 chr12:69119507 3'AG 69119507 Downstream 63bp
chr12 69119569 69119569 1 + C T LUSC 69119560 + 69119540 69119580 41 ATAGTTCAAAAGTTTCTTATCCTGGGAGACATTGATGGTAA ATAGTTCAAAAGTTTCTTATCCTGGGAGATATTGATGGTAA < 41bp 1 0.32672629320843 1 0.476724594831467 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69119560 chr12:69119569 synonymous SNV . 0 30 hm5C_associated_SNPs_28914 0 0 1 0 2 NUP107 chr12:69119576 5'GT 69119576 Upstream 8bp
chr10 70506929 70506929 1 + G T LUSC 70506935 + 70506915 70506955 41 CAGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAG CAGTGCTGTCAAAGTGAAAACCCCCCAAGTAGGTGACAGAG < 41bp 1 0.138417109890292 1 0.210924953222275 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506935 chr10:70506929 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_28915 0 0 1 2 1 CCAR1 chr10:70506918 3'AG 70506918 Downstream 12bp
chr10 70506929 70506929 1 + G T LUSC 70506936 + 70506916 70506956 41 AGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGT AGTGCTGTCAAAGTGAAAACCCCCCAAGTAGGTGACAGAGT < 41bp 1 0.142864042600363 1 0.208108872175217 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506936 chr10:70506929 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_28916 0 0 1 2 1 CCAR1 chr10:70506918 3'AG 70506918 Downstream 12bp
chr10 70506929 70506929 1 + G T LUSC 70506937 + 70506917 70506957 41 GTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGTA GTGCTGTCAAAGTGAAAACCCCCCAAGTAGGTGACAGAGTA < 41bp 1 0.493439383748196 1 0.338229566812515 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506937 chr10:70506929 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_28917 0 0 1 2 1 CCAR1 chr10:70506918 3'AG 70506918 Downstream 12bp
chr10 70506929 70506929 1 + G T LUSC 70506938 + 70506918 70506958 41 TGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGTAT TGCTGTCAAAGTGAAAACCCCCCAAGTAGGTGACAGAGTAT < 41bp 1 0.308670706701291 1 0.231115907430649 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506938 chr10:70506929 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_28918 0 0 1 2 1 CCAR1 chr10:70506918 3'AG 70506918 Downstream 12bp
chr5 61778973 61778973 1 + A G LUSC 61778983 + 61778963 61779003 41 TACTCCTCTAATTCAGAGATCACTGGAATTTTCTGTAAGCT TACTCCTCTAGTTCAGAGATCACTGGAATTTTCTGTAAGCT < 41bp 1 0.141757912971107 1 0.13109016418457 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IPO11 ENSG00000086200 CDS Human protein_coding chr5:61778983 chr5:61778973 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_28919 0 0 1 0 1 IPO11 chr5:61778928 3'AG 61778928 Downstream 46bp
chr10 45486409 45486409 1 + A G LUSC 45486398 + 45486378 45486418 41 AACCACCTTCTTTTTCAGAGCGGACAAAATTAAAAGACTGC AACCACCTTCTTTTTCAGAGCGGACAAAATTGAAAGACTGC < 41bp 1 0.0707743945620296 1 0.274621546268463 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45486398 chr10:45486409 synonymous SNV . 0 32 hm5C_associated_SNPs_28920 0 0 1 0 1 RASSF4 chr10:45486396 3'AG 45486396 Downstream 14bp
chr20 2843947 2843947 1 + G C LUSC 2843957 + 2843937 2843977 41 CTCGTGTTGCGGAGACTTTACCCCCTGGCCATCCAGATATG CTCGTGTTGCCGAGACTTTACCCCCTGGCCATCCAGATATG < 41bp 1 0.250862554575731 1 0.0417172014713287 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2843957 chr20:2843947 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_28921 0 0 0 1 1 VPS16 chr20:2843936 3'AG 2843936 Downstream 12bp
chr1 183495745 183495745 1 + G A LUSC 183495750 + 183495730 183495770 41 GTTATTACAAGAACTGTGTACAGTATTTAATGTAGATTTAC GTTATTACAAGAACTATGTACAGTATTTAATGTAGATTTAC < 41bp 1 0.237994767328959 1 0.0442043542861938 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMG7 ENSG00000116698 CDS Human protein_coding chr1:183495750 chr1:183495745 synonymous SNV . 0 16 hm5C_associated_SNPs_28922 0 0 1 0 1 SMG7 chr1:183495731 3'AG 183495731 Downstream 15bp
chr20 13765839 13765839 1 + G A LUSC 13765830 + 13765810 13765850 41 TGTCTCTCCCCGCGGTAGCACCTCGCCCAGAACCCTGAATA TGTCTCTCCCCGCGGTAGCACCTCGCCCAAAACCCTGAATA < 41bp 1 0.176688150519688 1 0.419313848018646 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NDUFAF5 ENSG00000101247 CDS Human protein_coding chr20:13765830 chr20:13765839 nonsynonymous SNV 0.917 0 30 hm5C_associated_SNPs_28923 0 0 1 0 1 NDUFAF5 chr20:13765936 5'GT 13765936 Upstream 98bp
chr6 158900915 158900915 1 + A T LUSC 158900920 + 158900900 158900940 41 CAGCAGGCCATCGCCAGCACCTTGCGTGAGGACAAGGACGT CAGCAGGCCATCGCCTGCACCTTGCGTGAGGACAAGGACGT < 41bp 1 0.194965633727598 1 0.160855889320374 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TULP4 ENSG00000130338 CDS Human protein_coding chr6:158900920 chr6:158900915 nonsynonymous SNV 0.990 3 16 hm5C_associated_SNPs_28926 0 0 1 0 1 TULP4 chr6:158901007 5'GT 158901007 Upstream 93bp
chrX 107834432 107834432 1 + C T LUSC 107834422 + 107834402 107834442 41 AGCCTGGGGCTCCTGGGCTTCCAGGGCCTCCTGGCCCTGCT AGCCTGGGGCTCCTGGGCTTCCAGGGCCTCTTGGCCCTGCT < 41bp 1 0.57106165187454 1 0.940315723419189 experiment 0.85787669625092 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107834422 chrX:107834432 nonsynonymous SNV 0.993 4 31 hm5C_associated_SNPs_28927 0 0 1 0 1 COL4A5 chrX:107834461 5'GT 107834461 Upstream 30bp
chrX 153695768 153695768 1 + C T LUSC 153695748 + 153695728 153695768 41 TTTACCTACTACCCTGATCCCAGCTTTGAGCCGCTGGGGCC TTTACCTACTACCCTGATCCCAGCTTTGAGCCGCTGGGGCT < 41bp 1 0.339652498561465 1 0.528595685958862 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153695748 chrX:153695768 nonsynonymous SNV 0.943 3 41 hm5C_associated_SNPs_28928 0 0 1 0 1 PLXNA3 chrX:153695814 5'GT 153695814 Upstream 47bp
chr8 95835787 95835787 1 + C G LUSC 95835768 + 95835748 95835788 41 AGGAGTCACTGTTGGAGAAACATCTGCGCAAGCCCTGCCCG AGGAGTCACTGTTGGAGAAACATCTGCGCAAGCCCTGCCGG < 41bp 1 0.514875316969019 1 0.268403679132462 experiment 0.970249366061962 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INTS8 ENSG00000164941 CDS Human protein_coding chr8:95835768 chr8:95835787 nonsynonymous SNV 0.866 3 40 hm5C_associated_SNPs_28930 0 0 1 0 1 INTS8 chr8:95835789 5'GT 95835789 Upstream 3bp
chr15 36989572 36989572 1 + G T LUSC 36989552 + 36989532 36989572 41 GTCATGAGCATGAGGTCCTGCTGAGAGACTTGCTTCTAGAG GTCATGAGCATGAGGTCCTGCTGAGAGACTTGCTTCTAGAT < 41bp 1 0.542854910516985 1 0.241732448339462 experiment 0.914290178966031 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989552 chr15:36989572 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_28931 0 0 1 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 49bp
chr15 36989572 36989572 1 + G T LUSC 36989552 + 36989532 36989572 41 GTCATGAGCATGAGGTCCTGCTGAGAGACTTGCTTCTAGAG GTCATGAGCATGAGGTCCTGCTGAGAGACTTGCTTCTAGAT < 41bp 1 0.542854910516985 1 0.241732448339462 experiment 0.914290178966031 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989552 chr15:36989572 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_28931 0 0 1 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 20bp
chr15 36989572 36989572 1 + G T LUSC 36989560 + 36989540 36989580 41 CATGAGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAACCT CATGAGGTCCTGCTGAGAGACTTGCTTCTAGATAAAAACCT < 41bp 1 0.255462002220069 1 0.164388358592987 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989560 chr15:36989572 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_28932 0 0 1 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 49bp
chr15 36989572 36989572 1 + G T LUSC 36989560 + 36989540 36989580 41 CATGAGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAACCT CATGAGGTCCTGCTGAGAGACTTGCTTCTAGATAAAAACCT < 41bp 1 0.255462002220069 1 0.164388358592987 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989560 chr15:36989572 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_28932 0 0 1 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 20bp
chr15 36989572 36989572 1 + G T LUSC 36989564 + 36989544 36989584 41 AGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAACCTGTCC AGGTCCTGCTGAGAGACTTGCTTCTAGATAAAAACCTGTCC < 41bp 1 0.163233835577817 1 0.0589678883552551 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989564 chr15:36989572 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_28933 0 0 1 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 49bp
chr15 36989572 36989572 1 + G T LUSC 36989564 + 36989544 36989584 41 AGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAACCTGTCC AGGTCCTGCTGAGAGACTTGCTTCTAGATAAAAACCTGTCC < 41bp 1 0.163233835577817 1 0.0589678883552551 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989564 chr15:36989572 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_28933 0 0 1 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 20bp
chr15 36989572 36989572 1 + G T LUSC 36989578 + 36989558 36989598 41 GACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTA GACTTGCTTCTAGATAAAAACCTGTCCTTCCTAGGTAAGTA < 41bp 1 0.109345230365198 1 0.0820868909358978 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989578 chr15:36989572 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_28934 0 0 1 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 49bp
chr15 36989572 36989572 1 + G T LUSC 36989578 + 36989558 36989598 41 GACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTA GACTTGCTTCTAGATAAAAACCTGTCCTTCCTAGGTAAGTA < 41bp 1 0.109345230365198 1 0.0820868909358978 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989578 chr15:36989572 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_28934 0 0 1 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 20bp
chr15 36989572 36989572 1 + G T LUSC 36989579 + 36989559 36989599 41 ACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTAT ACTTGCTTCTAGATAAAAACCTGTCCTTCCTAGGTAAGTAT < 41bp 1 0.203907259143719 1 0.0444067716598511 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989579 chr15:36989572 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_28935 0 0 1 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 49bp
chr15 36989572 36989572 1 + G T LUSC 36989579 + 36989559 36989599 41 ACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTAT ACTTGCTTCTAGATAAAAACCTGTCCTTCCTAGGTAAGTAT < 41bp 1 0.203907259143719 1 0.0444067716598511 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989579 chr15:36989572 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_28935 0 0 1 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 20bp
chr15 36989572 36989572 1 + G T LUSC 36989584 + 36989564 36989604 41 CTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTC CTTCTAGATAAAAACCTGTCCTTCCTAGGTAAGTATTATTC < 41bp 1 0.0947436666531818 1 0.0542307198047638 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989584 chr15:36989572 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_28936 0 0 1 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 49bp
chr15 36989572 36989572 1 + G T LUSC 36989584 + 36989564 36989604 41 CTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTC CTTCTAGATAAAAACCTGTCCTTCCTAGGTAAGTATTATTC < 41bp 1 0.0947436666531818 1 0.0542307198047638 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989584 chr15:36989572 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_28936 0 0 1 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 20bp
chr15 36989572 36989572 1 + G T LUSC 36989587 + 36989567 36989607 41 CTAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTCACA CTAGATAAAAACCTGTCCTTCCTAGGTAAGTATTATTCACA < 41bp 1 0.0880892560089287 1 0.148515611886978 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989587 chr15:36989572 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_28937 0 0 1 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 49bp
chr15 36989572 36989572 1 + G T LUSC 36989587 + 36989567 36989607 41 CTAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTCACA CTAGATAAAAACCTGTCCTTCCTAGGTAAGTATTATTCACA < 41bp 1 0.0880892560089287 1 0.148515611886978 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989587 chr15:36989572 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_28937 0 0 1 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 20bp
chr15 36989572 36989572 1 + G T LUSC 36989588 + 36989568 36989608 41 TAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTCACAT TAGATAAAAACCTGTCCTTCCTAGGTAAGTATTATTCACAT < 41bp 1 0.719896131895344 1 0.770488917827606 experiment 0.560207736209311 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989588 chr15:36989572 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_28938 0 0 1 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 49bp
chr15 36989572 36989572 1 + G T LUSC 36989588 + 36989568 36989608 41 TAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTCACAT TAGATAAAAACCTGTCCTTCCTAGGTAAGTATTATTCACAT < 41bp 1 0.719896131895344 1 0.770488917827606 experiment 0.560207736209311 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989588 chr15:36989572 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_28938 0 0 1 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 20bp
chr7 150773221 150773221 1 + C T LUSC 150773215 + 150773195 150773235 41 CCCCTTCATCCTCATCCTCACAGTGCCGCTCCGCATGGTGG CCCCTTCATCCTCATCCTCACAGTGCTGCTCCGCATGGTGG < 41bp 1 0.251940837594305 1 0.0670624375343323 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150773215 chr7:150773221 nonsynonymous SNV 0.955 4 27 hm5C_associated_SNPs_28940 0 0 1 0 1 SLC4A2 chr7:150773273 5'GT 150773273 Upstream 53bp
chr7 150773221 150773221 1 + C T LUSC 150773220 + 150773200 150773240 41 TCATCCTCATCCTCACAGTGCCGCTCCGCATGGTGGTGCTC TCATCCTCATCCTCACAGTGCTGCTCCGCATGGTGGTGCTC < 41bp 1 0.135970254255406 1 0.0262405276298523 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150773220 chr7:150773221 nonsynonymous SNV 0.955 4 22 hm5C_associated_SNPs_28941 0 0 1 0 1 SLC4A2 chr7:150773273 5'GT 150773273 Upstream 53bp
chr8 145139181 145139181 1 + T G LUSC 145139185 + 145139165 145139205 41 CTTGACCTGCTCAATCTCTTCCAGACCTTCTGCCAGAAAGG CTTGACCTGCTCAATCGCTTCCAGACCTTCTGCCAGAAAGG < 41bp 1 0.442642272321736 1 0.351506531238556 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139185 chr8:145139181 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_28942 0 0 1 0 1 GPAA1 chr8:145139233 5'GT 145139233 Upstream 53bp
chr3 127323819 127323819 1 + G A LUSC 127323809 + 127323789 127323829 41 GAGCGGGCCACGGAGGACGGCGAGGAGGACGAGGAGATGAT GAGCGGGCCACGGAGGACGGCGAGGAGGACAAGGAGATGAT < 41bp 1 0.694696951687572 1 0.528165340423584 experiment 0.610606096624855 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127323809 chr3:127323819 nonsynonymous SNV 0.991 1 31 hm5C_associated_SNPs_28943 0 0 1 0 2 MCM2 chr3:127323720 3'AG 127323720 Downstream 100bp
chr3 127323819 127323819 1 + G A LUSC 127323809 + 127323789 127323829 41 GAGCGGGCCACGGAGGACGGCGAGGAGGACGAGGAGATGAT GAGCGGGCCACGGAGGACGGCGAGGAGGACAAGGAGATGAT < 41bp 1 0.694696951687572 1 0.528165340423584 experiment 0.610606096624855 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127323809 chr3:127323819 nonsynonymous SNV 0.991 1 31 hm5C_associated_SNPs_28943 0 0 1 0 2 MCM2 chr3:127323739 3'AG 127323739 Downstream 81bp
chr2 97875427 97875427 1 + G A LUSC 97875436 + 97875416 97875456 41 AGTGTCTTCTCGGAAAAAACCAGCCTTGAAGGTAATGAAAC AGTGTCTTCTCAGAAAAAACCAGCCTTGAAGGTAATGAAAC < 41bp 1 0.242344545052973 1 0.396384835243225 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD36 ENSG00000135976 CDS Human protein_coding chr2:97875436 chr2:97875427 nonsynonymous SNV 0.004 0 12 hm5C_associated_SNPs_28944 0 0 0 0 1 ANKRD36 chr2:97875446 5'GT 97875446 Upstream 20bp
chr1 29651779 29651779 1 + G T LUSC 29651781 + 29651761 29651801 41 CGCTGCCACAACTTGGTGGACGTTTTCTTTGCTGCCAAAAC CGCTGCCACAACTTGGTGTACGTTTTCTTTGCTGCCAAAAC < 41bp 1 0.0499051570730959 1 0.0387937426567078 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPRU ENSG00000060656 CDS Human protein_coding chr1:29651781 chr1:29651779 nonsynonymous SNV 0.994 3 19 hm5C_associated_SNPs_28945 0 0 1 0 2 PTPRU chr1:29651703 3'AG 29651703 Downstream 77bp
chr1 29651779 29651779 1 + G T LUSC 29651781 + 29651761 29651801 41 CGCTGCCACAACTTGGTGGACGTTTTCTTTGCTGCCAAAAC CGCTGCCACAACTTGGTGTACGTTTTCTTTGCTGCCAAAAC < 41bp 1 0.0499051570730959 1 0.0387937426567078 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPRU ENSG00000060656 CDS Human protein_coding chr1:29651781 chr1:29651779 nonsynonymous SNV 0.994 3 19 hm5C_associated_SNPs_28945 0 0 1 0 2 PTPRU chr1:29651838 5'GT 29651838 Upstream 60bp
chr5 912047 912047 1 + T A LUSC 912029 + 912009 912049 41 CGTGGCCTTCGTGGACAGGGCTGACATCAAGCAGTACATTG CGTGGCCTTCGTGGACAGGGCTGACATCAAGCAGTACAATG < 41bp 1 0.344616911799751 1 0.0236456096172333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:912029 chr5:912047 nonsynonymous SNV 0.705 5 39 hm5C_associated_SNPs_28946 0 0 1 0 2 TRIP13 chr5:911958 3'AG 911958 Downstream 90bp
chr5 912047 912047 1 + T A LUSC 912029 + 912009 912049 41 CGTGGCCTTCGTGGACAGGGCTGACATCAAGCAGTACATTG CGTGGCCTTCGTGGACAGGGCTGACATCAAGCAGTACAATG < 41bp 1 0.344616911799751 1 0.0236456096172333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:912029 chr5:912047 nonsynonymous SNV 0.705 5 39 hm5C_associated_SNPs_28946 0 0 1 0 2 TRIP13 chr5:912111 5'GT 912111 Upstream 65bp
chr6 43171608 43171608 1 + C T LUSC 43171598 + 43171578 43171618 41 CTGTTTGTTCCCAGACTGAACAGGGTTTTGCGCCACGAGCA CTGTTTGTTCCCAGACTGAACAGGGTTTTGTGCCACGAGCA < 41bp 1 0.622437674794827 1 0.843187689781189 experiment 0.755124650410347 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43171598 chr6:43171608 nonsynonymous SNV 0.984 3 31 hm5C_associated_SNPs_28948 0 0 0 0 1 CUL9 chr6:43171592 3'AG 43171592 Downstream 17bp
chr14 73550247 73550247 1 + G T LUSC 73550235 + 73550215 73550255 41 TTTTGAGCTGGAAGAGAGTACAAGGTGCTTCCGGAAAGCTT TTTTGAGCTGGAAGAGAGTACAAGGTGCTTCCTGAAAGCTT < 41bp 1 0.569866087858464 1 0.486958265304565 experiment 0.860267824283073 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73550235 chr14:73550247 stopgain 0.998 1 33 hm5C_associated_SNPs_28949 0 0 1 0 2 RBM25 chr14:73550202 3'AG 73550202 Downstream 46bp
chr14 73550247 73550247 1 + G T LUSC 73550235 + 73550215 73550255 41 TTTTGAGCTGGAAGAGAGTACAAGGTGCTTCCGGAAAGCTT TTTTGAGCTGGAAGAGAGTACAAGGTGCTTCCTGAAAGCTT < 41bp 1 0.569866087858464 1 0.486958265304565 experiment 0.860267824283073 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73550235 chr14:73550247 stopgain 0.998 1 33 hm5C_associated_SNPs_28949 0 0 1 0 2 RBM25 chr14:73550259 5'GT 73550259 Upstream 13bp
chr16 72142741 72142741 1 + C T LUSC 72142736 + 72142716 72142756 41 GAACATCCGCACAGGGATGCCCTGCCACTTGCACCCCACCA GAACATCCGCACAGGGATGCCCTGCTACTTGCACCCCACCA < 41bp 1 0.135077105328714 1 0.0543544590473175 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72142736 chr16:72142741 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_28950 0 0 1 0 2 DHX38 chr16:72142699 3'AG 72142699 Downstream 43bp
chr16 72142741 72142741 1 + C T LUSC 72142736 + 72142716 72142756 41 GAACATCCGCACAGGGATGCCCTGCCACTTGCACCCCACCA GAACATCCGCACAGGGATGCCCTGCTACTTGCACCCCACCA < 41bp 1 0.135077105328714 1 0.0543544590473175 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72142736 chr16:72142741 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_28950 0 0 1 0 2 DHX38 chr16:72142824 5'GT 72142824 Upstream 84bp
chr14 73550249 73550249 1 + A T LUSC 73550235 + 73550215 73550255 41 TTTTGAGCTGGAAGAGAGTACAAGGTGCTTCCGGAAAGCTT TTTTGAGCTGGAAGAGAGTACAAGGTGCTTCCGGTAAGCTT < 41bp 1 0.606212164600775 1 0.43021622300148 experiment 0.78757567079845 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73550235 chr14:73550249 synonymous SNV . 0 35 hm5C_associated_SNPs_28951 0 0 1 0 2 RBM25 chr14:73550202 3'AG 73550202 Downstream 48bp
chr14 73550249 73550249 1 + A T LUSC 73550235 + 73550215 73550255 41 TTTTGAGCTGGAAGAGAGTACAAGGTGCTTCCGGAAAGCTT TTTTGAGCTGGAAGAGAGTACAAGGTGCTTCCGGTAAGCTT < 41bp 1 0.606212164600775 1 0.43021622300148 experiment 0.78757567079845 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73550235 chr14:73550249 synonymous SNV . 0 35 hm5C_associated_SNPs_28951 0 0 1 0 2 RBM25 chr14:73550259 5'GT 73550259 Upstream 11bp
chr16 57171169 57171169 1 + A T LUSC 57171175 + 57171155 57171195 41 CCGGTTTGCGGCCCAGGCCACACAACAGCGGACGGCCACGG CCGGTTTGCGGCCCTGGCCACACAACAGCGGACGGCCACGG < 41bp 1 0.64210027452026 1 0.472647696733475 experiment 0.71579945095948 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57171175 chr16:57171169 nonsynonymous SNV 0.992 1 15 hm5C_associated_SNPs_28952 0 0 1 0 1 CPNE2 chr16:57171194 5'GT 57171194 Upstream 26bp
chr20 31374381 31374381 1 + G A LUSC 31374361 + 31374341 31374381 41 CGGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCG CGGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCA < 41bp 1 0.339689944148443 1 0.424803286790848 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374361 chr20:31374381 nonsynonymous SNV 0.997 3 41 hm5C_associated_SNPs_28953 0 0 0 0 1 DNMT3B chr20:31374308 3'AG 31374308 Downstream 74bp
chr20 31374381 31374381 1 + G A LUSC 31374362 + 31374342 31374382 41 GGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCGG GGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCAG < 41bp 1 0.647122823690188 1 0.604022622108459 experiment 0.705754352619625 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374362 chr20:31374381 nonsynonymous SNV 0.997 3 40 hm5C_associated_SNPs_28954 0 0 0 0 1 DNMT3B chr20:31374308 3'AG 31374308 Downstream 74bp
chr5 179151695 179151695 1 + C A LUSC 179151689 + 179151669 179151709 41 TGGTATGGAGTATAAGAAAACTGATGCACCTCAACCGGATG TGGTATGGAGTATAAGAAAACTGATGAACCTCAACCGGATG < 41bp 1 0.51324699433837 1 0.177122175693512 experiment 0.973506011323261 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151689 chr5:179151695 nonsynonymous SNV 0.943 1 27 hm5C_associated_SNPs_28955 0 0 1 0 2 CANX chr5:179151658 3'AG 179151658 Downstream 38bp
chr5 179151695 179151695 1 + C A LUSC 179151689 + 179151669 179151709 41 TGGTATGGAGTATAAGAAAACTGATGCACCTCAACCGGATG TGGTATGGAGTATAAGAAAACTGATGAACCTCAACCGGATG < 41bp 1 0.51324699433837 1 0.177122175693512 experiment 0.973506011323261 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151689 chr5:179151695 nonsynonymous SNV 0.943 1 27 hm5C_associated_SNPs_28955 0 0 1 0 2 CANX chr5:179151784 5'GT 179151784 Upstream 90bp
chr5 179151695 179151695 1 + C A LUSC 179151698 + 179151678 179151718 41 GTATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAG GTATAAGAAAACTGATGAACCTCAACCGGATGTGAAGGAAG < 41bp 1 0.638498940838659 1 0.742653846740723 experiment 0.723002118322682 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151698 chr5:179151695 nonsynonymous SNV 0.943 1 18 hm5C_associated_SNPs_28956 0 0 1 0 2 CANX chr5:179151658 3'AG 179151658 Downstream 38bp
chr5 179151695 179151695 1 + C A LUSC 179151698 + 179151678 179151718 41 GTATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAG GTATAAGAAAACTGATGAACCTCAACCGGATGTGAAGGAAG < 41bp 1 0.638498940838659 1 0.742653846740723 experiment 0.723002118322682 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151698 chr5:179151695 nonsynonymous SNV 0.943 1 18 hm5C_associated_SNPs_28956 0 0 1 0 2 CANX chr5:179151784 5'GT 179151784 Upstream 90bp
chr5 179151695 179151695 1 + C A LUSC 179151700 + 179151680 179151720 41 ATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAG ATAAGAAAACTGATGAACCTCAACCGGATGTGAAGGAAGAG < 41bp 1 0.269165911240542 1 0.184454143047333 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151700 chr5:179151695 nonsynonymous SNV 0.943 1 16 hm5C_associated_SNPs_28957 0 0 1 0 2 CANX chr5:179151658 3'AG 179151658 Downstream 38bp
chr5 179151695 179151695 1 + C A LUSC 179151700 + 179151680 179151720 41 ATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAG ATAAGAAAACTGATGAACCTCAACCGGATGTGAAGGAAGAG < 41bp 1 0.269165911240542 1 0.184454143047333 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151700 chr5:179151695 nonsynonymous SNV 0.943 1 16 hm5C_associated_SNPs_28957 0 0 1 0 2 CANX chr5:179151784 5'GT 179151784 Upstream 90bp
chr5 179151695 179151695 1 + C A LUSC 179151704 + 179151684 179151724 41 GAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAGGAAG GAAAACTGATGAACCTCAACCGGATGTGAAGGAAGAGGAAG < 41bp 1 0.498521378686011 1 0.754861235618591 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151704 chr5:179151695 nonsynonymous SNV 0.943 1 12 hm5C_associated_SNPs_28958 0 0 1 0 2 CANX chr5:179151658 3'AG 179151658 Downstream 38bp
chr5 179151695 179151695 1 + C A LUSC 179151704 + 179151684 179151724 41 GAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAGGAAG GAAAACTGATGAACCTCAACCGGATGTGAAGGAAGAGGAAG < 41bp 1 0.498521378686011 1 0.754861235618591 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151704 chr5:179151695 nonsynonymous SNV 0.943 1 12 hm5C_associated_SNPs_28958 0 0 1 0 2 CANX chr5:179151784 5'GT 179151784 Upstream 90bp
chr12 110770413 110770413 1 + G A LUSC 110770433 + 110770413 110770453 41 GGACAGAGTGGAAGGTGATACTTGTTCCCTTAATGAGTTTA AGACAGAGTGGAAGGTGATACTTGTTCCCTTAATGAGTTTA < 41bp 1 0.170951172386682 1 0.0864560008049011 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP2A2 ENSG00000174437 CDS Human protein_coding chr12:110770433 chr12:110770413 synonymous SNV . 0 1 hm5C_associated_SNPs_28963 0 0 1 0 1 ATP2A2 chr12:110770402 3'AG 110770402 Downstream 12bp
chr1 154304496 154304496 1 + G A LUSC 154304485 + 154304465 154304505 41 TGGGCTGTGTTACATAGAGACAGCAGAACTTGATGGGTAAG TGGGCTGTGTTACATAGAGACAGCAGAACTTAATGGGTAAG < 41bp 1 0.634125904916723 1 0.478939235210419 experiment 0.731748190166553 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154304485 chr1:154304496 nonsynonymous SNV 0.886 5 32 hm5C_associated_SNPs_28964 0 0 1 0 2 ATP8B2 chr1:154304430 3'AG 154304430 Downstream 67bp
chr1 154304496 154304496 1 + G A LUSC 154304485 + 154304465 154304505 41 TGGGCTGTGTTACATAGAGACAGCAGAACTTGATGGGTAAG TGGGCTGTGTTACATAGAGACAGCAGAACTTAATGGGTAAG < 41bp 1 0.634125904916723 1 0.478939235210419 experiment 0.731748190166553 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154304485 chr1:154304496 nonsynonymous SNV 0.886 5 32 hm5C_associated_SNPs_28964 0 0 1 0 2 ATP8B2 chr1:154304500 5'GT 154304500 Upstream 5bp
chr17 49239125 49239125 1 + A G LUSC 49239112 + 49239092 49239132 41 CATTATACATGGCAGTGATTCTGTGGAGAGTGCAGAGAAGG CATTATACATGGCAGTGATTCTGTGGAGAGTGCGGAGAAGG < 41bp 1 0.468906175979765 1 0.482679069042206 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NME1 ENSG00000239672 CDS Human protein_coding chr17:49239112 chr17:49239125 synonymous SNV . 0 34 hm5C_associated_SNPs_28965 0 0 1 0 1 NME1 chr17:49239089 3'AG 49239089 Downstream 37bp
chr17 49239125 49239125 1 + A G LUSC 49239124 + 49239104 49239144 41 CAGTGATTCTGTGGAGAGTGCAGAGAAGGAGATCGGCTTGT CAGTGATTCTGTGGAGAGTGCGGAGAAGGAGATCGGCTTGT < 41bp 1 0.510931557204393 1 0.698559880256653 experiment 0.978136885591215 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NME1 ENSG00000239672 CDS Human protein_coding chr17:49239124 chr17:49239125 synonymous SNV . 0 22 hm5C_associated_SNPs_28966 0 0 1 0 1 NME1 chr17:49239089 3'AG 49239089 Downstream 37bp
chr11 74329607 74329607 1 + G T LUSC 74329602 + 74329582 74329622 41 ATTTAGTGCTATACAATGTGCAGCTGCCGTCCCTAGAGCTC ATTTAGTGCTATACAATGTGCAGCTTCCGTCCCTAGAGCTC < 41bp 1 0.35209869634053 1 0.25530081987381 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329602 chr11:74329607 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_28968 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 26bp
chr11 74329607 74329607 1 + G T LUSC 74329605 + 74329585 74329625 41 TAGTGCTATACAATGTGCAGCTGCCGTCCCTAGAGCTCCTG TAGTGCTATACAATGTGCAGCTTCCGTCCCTAGAGCTCCTG < 41bp 1 0.0567239558009373 1 0.0531302094459534 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329605 chr11:74329607 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_28969 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 26bp
chr11 74329607 74329607 1 + G T LUSC 74329608 + 74329588 74329628 41 TGCTATACAATGTGCAGCTGCCGTCCCTAGAGCTCCTGCTG TGCTATACAATGTGCAGCTTCCGTCCCTAGAGCTCCTGCTG < 41bp 1 0.0768296773729985 1 0.053628146648407 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329608 chr11:74329607 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_28970 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 26bp
chr11 74329607 74329607 1 + G T LUSC 74329609 + 74329589 74329629 41 GCTATACAATGTGCAGCTGCCGTCCCTAGAGCTCCTGCTGA GCTATACAATGTGCAGCTTCCGTCCCTAGAGCTCCTGCTGA < 41bp 1 0.205277332762934 1 0.180572301149368 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329609 chr11:74329607 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_28971 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 26bp
chr11 74329607 74329607 1 + G T LUSC 74329614 + 74329594 74329634 41 ACAATGTGCAGCTGCCGTCCCTAGAGCTCCTGCTGAATCCT ACAATGTGCAGCTTCCGTCCCTAGAGCTCCTGCTGAATCCT < 41bp 1 0.756168006933315 1 0.338771849870682 experiment 0.48766398613337 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329614 chr11:74329607 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_28972 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 26bp
chr11 74329607 74329607 1 + G T LUSC 74329623 + 74329603 74329643 41 AGCTGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTT AGCTTCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTT < 41bp 1 0.539942557015967 1 0.0966184437274933 experiment 0.920114885968065 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329623 chr11:74329607 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_28973 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 26bp
chr11 74329607 74329607 1 + G T LUSC 74329626 + 74329606 74329646 41 TGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCA TTCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCA < 41bp 1 0.693501321978932 1 0.14814418554306 experiment 0.612997356042135 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329626 chr11:74329607 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_28974 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 26bp
chr1 45479691 45479691 1 + C T LUSC 45479707 + 45479687 45479727 41 TCCTCACTGATGCTCTGGTCCCATATCTGGTAGGACAAGTG TCCTTACTGATGCTCTGGTCCCATATCTGGTAGGACAAGTG < 41bp 1 0.254912095232814 1 0.0780476033687592 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UROD ENSG00000126088 CDS Human protein_coding chr1:45479707 chr1:45479691 synonymous SNV . 0 5 hm5C_associated_SNPs_28975 0 0 1 0 1 UROD chr1:45479742 5'GT 45479742 Upstream 52bp
chr1 45479691 45479691 1 + C T LUSC 45479708 + 45479688 45479728 41 CCTCACTGATGCTCTGGTCCCATATCTGGTAGGACAAGTGG CCTTACTGATGCTCTGGTCCCATATCTGGTAGGACAAGTGG < 41bp 1 0.276777159636871 1 0.233365386724472 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UROD ENSG00000126088 CDS Human protein_coding chr1:45479708 chr1:45479691 synonymous SNV . 0 4 hm5C_associated_SNPs_28976 0 0 1 0 1 UROD chr1:45479742 5'GT 45479742 Upstream 52bp
chr11 68822717 68822717 1 + C A LUSC 68822727 + 68822707 68822747 41 ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCCCTGGGA ACCAGCACGGAGGACGTGCGCTACCGCGCTGCTCCCTGGGA < 41bp 1 0.448696926154221 1 0.0774835050106049 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68822727 chr11:68822717 nonsynonymous SNV 0.003 2 11 hm5C_associated_SNPs_28977 0 0 0 0 1 TPCN2 chr11:68822643 3'AG 68822643 Downstream 75bp
chr8 144644930 144644930 1 + G A LUSC 144644948 + 144644928 144644968 41 CCGGCCTGGGTCTTGCTGGACGAGTGTGGCCTAGAGCTGGG CCAGCCTGGGTCTTGCTGGACGAGTGTGGCCTAGAGCTGGG < 41bp 1 0.777556251300606 1 0.434881120920181 experiment 0.444887497398787 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control GSDMD ENSG00000104518 CDS Human protein_coding chr8:144644948 chr8:144644930 synonymous SNV . 0 3 hm5C_associated_SNPs_28978 0 0 1 0 1 GSDMD chr8:144644832 3'AG 144644832 Downstream 99bp
chr3 148714590 148714590 1 + G C LUSC 148714596 + 148714576 148714616 41 AGCACCAGACCCAGGGTGGCCTGACTGCTTCAATTCCGGAG AGCACCAGACCCAGCGTGGCCTGACTGCTTCAATTCCGGAG < 41bp 1 0.447920727385407 1 0.132977396249771 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GYG1 ENSG00000163754 CDS Human protein_coding chr3:148714596 chr3:148714590 nonsynonymous SNV 0.998 4 15 hm5C_associated_SNPs_28979 0 0 1 0 2 GYG1 chr3:148714529 3'AG 148714529 Downstream 62bp
chr3 148714590 148714590 1 + G C LUSC 148714596 + 148714576 148714616 41 AGCACCAGACCCAGGGTGGCCTGACTGCTTCAATTCCGGAG AGCACCAGACCCAGCGTGGCCTGACTGCTTCAATTCCGGAG < 41bp 1 0.447920727385407 1 0.132977396249771 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GYG1 ENSG00000163754 CDS Human protein_coding chr3:148714596 chr3:148714590 nonsynonymous SNV 0.998 4 15 hm5C_associated_SNPs_28979 0 0 1 0 2 GYG1 chr3:148714679 5'GT 148714679 Upstream 90bp
chr12 109637324 109637324 1 + C T LUSC 109637339 + 109637319 109637359 41 GGCCACGTTGAGGCTGGGAGCAGCTACGCTGAGATGGAGGT GGCCATGTTGAGGCTGGGAGCAGCTACGCTGAGATGGAGGT < 41bp 1 0.243607432563505 1 0.697700560092926 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109637339 chr12:109637324 synonymous SNV . 0 6 hm5C_associated_SNPs_28980 0 0 1 0 1 ACACB chr12:109637357 5'GT 109637357 Upstream 34bp
chr11 46747431 46747431 1 + G T LUSC 46747436 + 46747416 46747456 41 TCAAGTCACTGTAGCGATGACTCCACGCTCCGAAGGCTCCA TCAAGTCACTGTAGCTATGACTCCACGCTCCGAAGGCTCCA < 41bp 1 0.699337174970404 1 0.956346154212952 experiment 0.601325650059193 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control F2 ENSG00000180210 CDS Human protein_coding chr11:46747436 chr11:46747431 synonymous SNV . 0 16 hm5C_associated_SNPs_28982 0 0 0 0 1 F2 chr11:46747409 3'AG 46747409 Downstream 23bp
chr11 61503245 61503245 1 + G T LUSC 61503225 + 61503205 61503245 41 CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTGAGCG CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTGAGCT < 41bp 1 0.223833801168189 1 0.0798683762550354 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503225 chr11:61503245 nonsynonymous SNV 0.995 3 41 hm5C_associated_SNPs_28983 0 0 1 0 2 DAGLA chr11:61503211 3'AG 61503211 Downstream 35bp
chr11 61503245 61503245 1 + G T LUSC 61503225 + 61503205 61503245 41 CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTGAGCG CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTGAGCT < 41bp 1 0.223833801168189 1 0.0798683762550354 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503225 chr11:61503245 nonsynonymous SNV 0.995 3 41 hm5C_associated_SNPs_28983 0 0 1 0 2 DAGLA chr11:61503288 5'GT 61503288 Upstream 44bp
chr14 90867645 90867645 1 + G T LUSC 90867648 + 90867628 90867668 41 TGATAAAGATGGCGATGGCACCATCACAACAAAGGAACTTG TGATAAAGATGGCGATGTCACCATCACAACAAAGGAACTTG < 41bp 1 0.107284985749013 1 0.119933992624283 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CALM1 ENSG00000198668 CDS Human protein_coding chr14:90867648 chr14:90867645 nonsynonymous SNV 0.976 2 18 hm5C_associated_SNPs_28984 0 0 1 0 1 CALM1 chr14:90867603 3'AG 90867603 Downstream 43bp
chr14 90867645 90867645 1 + G T LUSC 90867649 + 90867629 90867669 41 GATAAAGATGGCGATGGCACCATCACAACAAAGGAACTTGG GATAAAGATGGCGATGTCACCATCACAACAAAGGAACTTGG < 41bp 1 0.583155291584144 1 0.421074271202087 experiment 0.833689416831712 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CALM1 ENSG00000198668 CDS Human protein_coding chr14:90867649 chr14:90867645 nonsynonymous SNV 0.976 2 17 hm5C_associated_SNPs_28985 0 0 1 0 1 CALM1 chr14:90867603 3'AG 90867603 Downstream 43bp
chr14 90867644 90867644 1 + G T LUSC 90867648 + 90867628 90867668 41 TGATAAAGATGGCGATGGCACCATCACAACAAAGGAACTTG TGATAAAGATGGCGATTGCACCATCACAACAAAGGAACTTG < 41bp 1 0.0937268620994132 1 0.0808326900005341 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CALM1 ENSG00000198668 CDS Human protein_coding chr14:90867648 chr14:90867644 nonsynonymous SNV 0.936 2 17 hm5C_associated_SNPs_28986 0 0 1 0 1 CALM1 chr14:90867603 3'AG 90867603 Downstream 42bp
chr14 90867644 90867644 1 + G T LUSC 90867649 + 90867629 90867669 41 GATAAAGATGGCGATGGCACCATCACAACAAAGGAACTTGG GATAAAGATGGCGATTGCACCATCACAACAAAGGAACTTGG < 41bp 1 0.479467543411027 1 0.374849945306778 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CALM1 ENSG00000198668 CDS Human protein_coding chr14:90867649 chr14:90867644 nonsynonymous SNV 0.936 2 16 hm5C_associated_SNPs_28987 0 0 1 0 1 CALM1 chr14:90867603 3'AG 90867603 Downstream 42bp
chr13 48828053 48828053 1 + A G LUSC 48828044 + 48828024 48828064 41 AGGTGTTATTCTAGGAGGAGCATACTTGTACAAATATTTTG AGGTGTTATTCTAGGAGGAGCATACTTGTGCAAATATTTTG < 41bp 1 0.0852270121878124 1 0.199811935424805 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITM2B ENSG00000136156 CDS Human protein_coding chr13:48828044 chr13:48828053 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_28988 0 0 1 0 1 ITM2B chr13:48828072 5'GT 48828072 Upstream 20bp
chr1 186106668 186106668 1 + T C LUSC 186106679 + 186106659 186106699 41 TGGAGAGCCTGCAGTGTCACCTGTGGAAAAGGCATCCAAAA TGGAGAGCCCGCAGTGTCACCTGTGGAAAAGGCATCCAAAA < 41bp 1 0.163471401860994 1 0.497988849878311 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HMCN1 ENSG00000143341 CDS Human protein_coding chr1:186106679 chr1:186106668 nonsynonymous SNV 0.992 5 10 hm5C_associated_SNPs_28989 0 0 0 0 1 HMCN1 chr1:186106630 3'AG 186106630 Downstream 39bp
chr13 48937009 48937009 1 + G T LUSC 48936995 + 48936975 48937015 41 GTTCACCTCGAACACCCAGGCGAGGTCAGAACAGGAGTGCA GTTCACCTCGAACACCCAGGCGAGGTCAGAACAGTAGTGCA < 41bp 1 0.642194282362834 1 0.864266395568848 experiment 0.715611435274331 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RB1 ENSG00000139687 CDS Human protein_coding chr13:48936995 chr13:48937009 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_28990 0 0 1 2 1 RB1 chr13:48936951 3'AG 48936951 Downstream 59bp
chr10 17278315 17278315 1 + T A LUSC 17278316 + 17278296 17278336 41 CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTCAAAA CTAATCTGGATTCACTCCCACTGGTTGATACCCACTCAAAA < 41bp 1 0.241965278615857 1 0.316703677177429 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278316 chr10:17278315 synonymous SNV . 0 20 hm5C_associated_SNPs_28991 0 0 1 0 2 VIM chr10:17278293 3'AG 17278293 Downstream 23bp
chr10 17278315 17278315 1 + T A LUSC 17278316 + 17278296 17278336 41 CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTCAAAA CTAATCTGGATTCACTCCCACTGGTTGATACCCACTCAAAA < 41bp 1 0.241965278615857 1 0.316703677177429 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278316 chr10:17278315 synonymous SNV . 0 20 hm5C_associated_SNPs_28991 0 0 1 0 2 VIM chr10:17278378 5'GT 17278378 Upstream 64bp
chr1 10165591 10165591 1 + G T LUSC 10165581 + 10165561 10165601 41 GCCTTTCCAACAGTATTCTCCGATTTTAAGGACTTGATTGG GCCTTTCCAACAGTATTCTCCGATTTTAAGTACTTGATTGG < 41bp 1 0.069887997566147 1 0.108505755662918 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBE4B ENSG00000130939 CDS Human protein_coding chr1:10165581 chr1:10165591 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_28995 0 0 1 0 1 UBE4B chr1:10165574 3'AG 10165574 Downstream 18bp
chr3 184021754 184021754 1 + G A LUSC 184021744 + 184021724 184021764 41 GCTCTTTGTAGTCAGGAGCTCTTCTTGCCTGTGGCATAGTG GCTCTTTGTAGTCAGGAGCTCTTCTTGCCTATGGCATAGTG < 41bp 1 0.174781262579698 1 0.110863745212555 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184021744 chr3:184021754 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_28996 0 0 1 0 1 PSMD2 chr3:184021735 3'AG 184021735 Downstream 20bp
chrX 149671757 149671757 1 + G T LUSC 149671740 + 149671720 149671760 41 GGGCAGCTGGGATCCGAAGGCCTGGAGGCAGGTGCCCGCTC GGGCAGCTGGGATCCGAAGGCCTGGAGGCAGGTGCCCTCTC < 41bp 1 0.459855043125105 1 0.526938259601593 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149671740 chrX:149671757 nonsynonymous SNV 0.999 1 38 hm5C_associated_SNPs_28997 0 0 0 0 1 MAMLD1 chrX:149671787 5'GT 149671787 Upstream 31bp
chrX 149671757 149671757 1 + G T LUSC 149671748 + 149671728 149671768 41 GGGATCCGAAGGCCTGGAGGCAGGTGCCCGCTCCACTACTG GGGATCCGAAGGCCTGGAGGCAGGTGCCCTCTCCACTACTG < 41bp 1 0.682467614862418 1 0.63179612159729 experiment 0.635064770275164 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149671748 chrX:149671757 nonsynonymous SNV 0.999 1 30 hm5C_associated_SNPs_28998 0 0 0 0 1 MAMLD1 chrX:149671787 5'GT 149671787 Upstream 31bp
chr15 41229676 41229676 1 + T G LUSC 41229671 + 41229651 41229691 41 CCCCCAGGGACTCCATGTACCAGTCTGTGTGTTTGATATCA CCCCCAGGGACTCCATGTACCAGTCGGTGTGTTTGATATCA < 41bp 1 0.170665158303449 1 0.619512856006622 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DLL4 ENSG00000128917 CDS Human protein_coding chr15:41229671 chr15:41229676 synonymous SNV . 0 26 hm5C_associated_SNPs_29000 0 0 0 0 2 DLL4 chr15:41229616 3'AG 41229616 Downstream 61bp
chr15 41229676 41229676 1 + T G LUSC 41229671 + 41229651 41229691 41 CCCCCAGGGACTCCATGTACCAGTCTGTGTGTTTGATATCA CCCCCAGGGACTCCATGTACCAGTCGGTGTGTTTGATATCA < 41bp 1 0.170665158303449 1 0.619512856006622 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DLL4 ENSG00000128917 CDS Human protein_coding chr15:41229671 chr15:41229676 synonymous SNV . 0 26 hm5C_associated_SNPs_29000 0 0 0 0 2 DLL4 chr15:41229724 5'GT 41229724 Upstream 49bp
chr19 30499996 30499996 1 + G A LUSC 30500003 + 30499983 30500023 41 CAAATGTGAATGCGATGCATCAAGTAACAGACTCTCATACT CAAATGTGAATGCAATGCATCAAGTAACAGACTCTCATACT < 41bp 1 0.47658474357764 1 0.165496915578842 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control URI1 ENSG00000105176 CDS Human protein_coding chr19:30500003 chr19:30499996 synonymous SNV . 0 14 hm5C_associated_SNPs_29001 0 0 1 0 1 URI1 chr19:30499912 3'AG 30499912 Downstream 85bp
chr7 128486411 128486411 1 + C T LUSC 128486405 + 128486385 128486425 41 AGGTCGCTGTGCCCAAGAGCCCCTTCCGAGTGGGCGTGACC AGGTCGCTGTGCCCAAGAGCCCCTTCTGAGTGGGCGTGACC < 41bp 1 0.0315954353627884 1 0.0269523561000824 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486405 chr7:128486411 stopgain 0.992 1 27 hm5C_associated_SNPs_29002 0 0 1 0 1 FLNC chr7:128486355 3'AG 128486355 Downstream 57bp
chr8 145139401 145139401 1 + G T LUSC 145139396 + 145139376 145139416 41 CTCATGGTTCTGCGGCAGGCCTCCGGCCGCCCCCACGGCTC CTCATGGTTCTGCGGCAGGCCTCCGTCCGCCCCCACGGCTC < 41bp 1 0.746696877821738 1 0.755422830581665 experiment 0.506606244356524 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139396 chr8:145139401 nonsynonymous SNV 0.736 4 26 hm5C_associated_SNPs_29005 0 0 1 0 1 GPAA1 chr8:145139316 3'AG 145139316 Downstream 86bp
chr8 145139401 145139401 1 + G T LUSC 145139416 + 145139396 145139436 41 CTCCGGCCGCCCCCACGGCTCCCATGGCCTCTTCCTGCGCT CTCCGTCCGCCCCCACGGCTCCCATGGCCTCTTCCTGCGCT < 41bp 1 0.332737688508362 1 0.0210722386837006 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139416 chr8:145139401 nonsynonymous SNV 0.736 4 6 hm5C_associated_SNPs_29006 0 0 1 0 1 GPAA1 chr8:145139316 3'AG 145139316 Downstream 86bp
chr8 145139401 145139401 1 + G T LUSC 145139418 + 145139398 145139438 41 CCGGCCGCCCCCACGGCTCCCATGGCCTCTTCCTGCGCTAC CCGTCCGCCCCCACGGCTCCCATGGCCTCTTCCTGCGCTAC < 41bp 1 0.545809009819456 1 0.0328400135040283 experiment 0.908381980361088 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139418 chr8:145139401 nonsynonymous SNV 0.736 4 4 hm5C_associated_SNPs_29007 0 0 1 0 1 GPAA1 chr8:145139316 3'AG 145139316 Downstream 86bp
chr16 84872284 84872284 1 + G T LUSC 84872297 + 84872277 84872317 41 TCCTCATGCTGCACAACAAGCTTCGGGGCCAGGTGCAGCCT TCCTCATTCTGCACAACAAGCTTCGGGGCCAGGTGCAGCCT < 41bp 1 0.449159157948878 1 0.067629337310791 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84872297 chr16:84872284 nonsynonymous SNV 0.944 0 8 hm5C_associated_SNPs_29008 0 0 0 0 1 CRISPLD2 chr16:84872341 5'GT 84872341 Upstream 58bp
chr14 105177440 105177440 1 + G T LUSC 105177427 + 105177407 105177447 41 CCCTCCCAGGGCAGCCACACCGGTGACGCCGACGGCTTCAA CCCTCCCAGGGCAGCCACACCGGTGACGCCGACTGCTTCAA < 41bp 1 0.468434376489265 1 0.674362897872925 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105177427 chr14:105177440 nonsynonymous SNV 0.537 4 34 hm5C_associated_SNPs_29009 0 0 1 0 2 INF2 chr14:105177416 3'AG 105177416 Downstream 25bp
chr14 105177440 105177440 1 + G T LUSC 105177427 + 105177407 105177447 41 CCCTCCCAGGGCAGCCACACCGGTGACGCCGACGGCTTCAA CCCTCCCAGGGCAGCCACACCGGTGACGCCGACTGCTTCAA < 41bp 1 0.468434376489265 1 0.674362897872925 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105177427 chr14:105177440 nonsynonymous SNV 0.537 4 34 hm5C_associated_SNPs_29009 0 0 1 0 2 INF2 chr14:105177523 5'GT 105177523 Upstream 84bp
chr1 46497091 46497091 1 + A T LUSC 46497074 + 46497054 46497094 41 GGCCTACAGCTATGGAGACCCGAGGCCGTGGGACCTCACAG GGCCTACAGCTATGGAGACCCGAGGCCGTGGGACCTCTCAG < 41bp 1 0.67419662146809 1 0.847663044929504 experiment 0.65160675706382 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control MAST2 ENSG00000086015 CDS Human protein_coding chr1:46497074 chr1:46497091 synonymous SNV . 0 38 hm5C_associated_SNPs_29010 0 0 1 0 1 MAST2 chr1:46497063 3'AG 46497063 Downstream 29bp
chr5 68425360 68425360 1 + A T LUSC 68425373 + 68425353 68425393 41 CTGGCCTAAGTACTGGATTTCATGATGTTCTGGCTATGACA CTGGCCTTAGTACTGGATTTCATGATGTTCTGGCTATGACA < 41bp 1 0.55664351459657 1 0.346598744392395 experiment 0.88671297080686 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC30A5 ENSG00000145740 CDS Human protein_coding chr5:68425373 chr5:68425360 synonymous SNV . 0 8 hm5C_associated_SNPs_29011 0 0 1 0 1 SLC30A5 chr5:68425274 3'AG 68425274 Downstream 87bp
chr18 9182474 9182474 1 + C G LUSC 9182456 + 9182436 9182476 41 CAAATCTGGGTTCACAAAACCAATTCAGAGTGAAAATTCTG CAAATCTGGGTTCACAAAACCAATTCAGAGTGAAAATTGTG < 41bp 1 0.0780043190960045 1 0.0649958252906799 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD12 ENSG00000101745 CDS Human processed_transcript chr18:9182456 chr18:9182474 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_29013 0 0 1 0 2 ANKRD12 chr18:9182380 3'AG 9182380 Downstream 95bp
chr18 9182474 9182474 1 + C G LUSC 9182456 + 9182436 9182476 41 CAAATCTGGGTTCACAAAACCAATTCAGAGTGAAAATTCTG CAAATCTGGGTTCACAAAACCAATTCAGAGTGAAAATTGTG < 41bp 1 0.0780043190960045 1 0.0649958252906799 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD12 ENSG00000101745 CDS Human protein_coding chr18:9182456 chr18:9182474 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_29013 0 0 1 0 2 ANKRD12 chr18:9182517 5'GT 9182517 Upstream 44bp
chr10 103919289 103919289 1 + G C LUSC 103919298 + 103919278 103919318 41 CCAGTGACGAGGAAGAGGAGCAAAAAAAACCCATGAAAAAT CCAGTGACGAGCAAGAGGAGCAAAAAAAACCCATGAAAAAT < 41bp 1 0.504117138642786 1 0.49727389216423 experiment 0.991765722714428 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919298 chr10:103919289 nonsynonymous SNV 0.977 3 12 hm5C_associated_SNPs_29017 0 0 1 0 2 NOLC1 chr10:103919190 3'AG 103919190 Downstream 100bp
chr10 103919289 103919289 1 + G C LUSC 103919298 + 103919278 103919318 41 CCAGTGACGAGGAAGAGGAGCAAAAAAAACCCATGAAAAAT CCAGTGACGAGCAAGAGGAGCAAAAAAAACCCATGAAAAAT < 41bp 1 0.504117138642786 1 0.49727389216423 experiment 0.991765722714428 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919298 chr10:103919289 nonsynonymous SNV 0.977 3 12 hm5C_associated_SNPs_29017 0 0 1 0 2 NOLC1 chr10:103919325 5'GT 103919325 Upstream 37bp
chr2 28002352 28002352 1 + G T LUSC 28002338 + 28002318 28002358 41 TCGTGGAAAAGAAAAAAATACGCTCCCTTTAAACGGTGGAT TCGTGGAAAAGAAAAAAATACGCTCCCTTTAAACTGTGGAT < 41bp 1 0.215967802278179 1 0.223286330699921 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPL33 ENSG00000243147 CDS Human protein_coding chr2:28002338 chr2:28002352 nonsynonymous SNV 0.698 1 35 hm5C_associated_SNPs_29018 0 0 1 0 1 MRPL33 chr2:28002300 3'AG 28002300 Downstream 53bp
chr5 102472515 102472515 1 + C G LUSC 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATCAATGACTTGAATATGCAGTATCTGATACAAGATAGG < 41bp 1 0.388813848474402 1 0.190113127231598 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472515 synonymous SNV . 0 29 hm5C_associated_SNPs_29019 0 0 1 2 2 PPIP5K2 chr5:102472436 3'AG 102472436 Downstream 80bp
chr5 102472515 102472515 1 + C G LUSC 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATCAATGACTTGAATATGCAGTATCTGATACAAGATAGG < 41bp 1 0.388813848474402 1 0.190113127231598 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472515 synonymous SNV . 0 29 hm5C_associated_SNPs_29019 0 0 1 2 2 PPIP5K2 chr5:102472526 5'GT 102472526 Upstream 12bp
chr10 17277852 17277852 1 + C T LUSC 17277858 + 17277838 17277878 41 TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG TTTATAGGATTTCTTTGCCTCTTCCAAACTTTTCCTCCCTG < 41bp 1 0.0664302417800743 1 0.443943440914154 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277858 chr10:17277852 synonymous SNV . 0 15 hm5C_associated_SNPs_29020 0 0 1 1 2 VIM chr10:17277845 3'AG 17277845 Downstream 8bp
chr10 17277852 17277852 1 + C T LUSC 17277858 + 17277838 17277878 41 TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG TTTATAGGATTTCTTTGCCTCTTCCAAACTTTTCCTCCCTG < 41bp 1 0.0664302417800743 1 0.443943440914154 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277858 chr10:17277852 synonymous SNV . 0 15 hm5C_associated_SNPs_29020 0 0 1 1 2 VIM chr10:17277888 5'GT 17277888 Upstream 37bp
chr17 7463198 7463198 1 + G A LUSC 7463183 + 7463163 7463203 41 AGCAGCACTCTGTCCTGCACCTGGTTCCCATTAACGCCACC AGCAGCACTCTGTCCTGCACCTGGTTCCCATTAACACCACC < 41bp 1 0.403183161306742 1 0.449590593576431 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNFSF12-TNFSF13;TNFSF13 ENSG00000161955;ENSG00000239697;ENSG00000248871 CDS Human other chr17:7463183 chr17:7463198 nonsynonymous SNV 0.969 0 36 hm5C_associated_SNPs_29021 0 0 0 0 3 TNFSF12-TNFSF13;TNFSF13;TNFSF13 chr17:7463163 3'AG 7463163 Downstream 36bp
chr17 7463198 7463198 1 + G A LUSC 7463183 + 7463163 7463203 41 AGCAGCACTCTGTCCTGCACCTGGTTCCCATTAACGCCACC AGCAGCACTCTGTCCTGCACCTGGTTCCCATTAACACCACC < 41bp 1 0.403183161306742 1 0.449590593576431 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNFSF12-TNFSF13;TNFSF13 ENSG00000161955;ENSG00000239697;ENSG00000248871 CDS Human other chr17:7463183 chr17:7463198 nonsynonymous SNV 0.969 0 36 hm5C_associated_SNPs_29021 0 0 0 0 3 TNFSF12-TNFSF13;TNFSF13 chr17:7463165 3'AG 7463165 Downstream 34bp
chr17 7463198 7463198 1 + G A LUSC 7463183 + 7463163 7463203 41 AGCAGCACTCTGTCCTGCACCTGGTTCCCATTAACGCCACC AGCAGCACTCTGTCCTGCACCTGGTTCCCATTAACACCACC < 41bp 1 0.403183161306742 1 0.449590593576431 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNFSF12-TNFSF13;TNFSF13 ENSG00000161955;ENSG00000239697;ENSG00000248871 CDS Human other chr17:7463183 chr17:7463198 nonsynonymous SNV 0.969 0 36 hm5C_associated_SNPs_29021 0 0 0 0 3 TNFSF12-TNFSF13;TNFSF13 chr17:7463168 3'AG 7463168 Downstream 31bp
chr12 53428431 53428431 1 + G T LUSC 53428436 + 53428416 53428456 41 AAGAAACTCAGGAACGGGAACGGTCGAGGACAGGAAGTGAG AAGAAACTCAGGAACTGGAACGGTCGAGGACAGGAAGTGAG < 41bp 1 0.235293085657831 1 0.526359677314758 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53428436 chr12:53428431 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_29022 0 0 1 0 2 EIF4B chr12:53428396 3'AG 53428396 Downstream 36bp
chr12 53428431 53428431 1 + G T LUSC 53428436 + 53428416 53428456 41 AAGAAACTCAGGAACGGGAACGGTCGAGGACAGGAAGTGAG AAGAAACTCAGGAACTGGAACGGTCGAGGACAGGAAGTGAG < 41bp 1 0.235293085657831 1 0.526359677314758 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53428436 chr12:53428431 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_29022 0 0 1 0 2 EIF4B chr12:53428493 5'GT 53428493 Upstream 63bp
chr20 55088446 55088446 1 + A G LUSC 55088433 + 55088413 55088453 41 GGCACCAAGGAGGATGTGGACGTGCTGAAGACAAGGATGGA GGCACCAAGGAGGATGTGGACGTGCTGAAGACAGGGATGGA < 41bp 1 0.465451240020176 1 0.0875260829925537 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55088433 chr20:55088446 nonsynonymous SNV 0.959 3 34 hm5C_associated_SNPs_29025 0 0 1 0 1 RTFDC1 chr20:55088484 5'GT 55088484 Upstream 39bp
chr2 32773032 32773032 1 + C T LUSC 32773028 + 32773008 32773048 41 CTTCTGGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAGG CTTCTGGGTGGGATGTGGAACAAGTCTTAACTAAGCAAAGG < 41bp 1 0.197787474064207 1 0.436412006616592 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773028 chr2:32773032 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_29027 0 0 1 0 1 BIRC6 chr2:32773081 5'GT 32773081 Upstream 50bp
chr2 32773032 32773032 1 + C T LUSC 32773033 + 32773013 32773053 41 GGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAGGCTGGA GGGTGGGATGTGGAACAAGTCTTAACTAAGCAAAGGCTGGA < 41bp 1 0.266631013187191 1 0.0667303502559662 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773033 chr2:32773032 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_29028 0 0 1 0 1 BIRC6 chr2:32773081 5'GT 32773081 Upstream 50bp
chr2 32773032 32773032 1 + C T LUSC 32773043 + 32773023 32773063 41 TGGAACAAGCCTTAACTAAGCAAAGGCTGGAAGAGGAACAT TGGAACAAGTCTTAACTAAGCAAAGGCTGGAAGAGGAACAT < 41bp 1 0.176917060463513 1 0.546582698822021 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773043 chr2:32773032 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_29029 0 0 1 0 1 BIRC6 chr2:32773081 5'GT 32773081 Upstream 50bp
chr14 105355929 105355929 1 + A C LUSC 105355938 + 105355918 105355958 41 ACGGCTCCCCCAAACACACACGCTCCCACACCTCAACAGCC ACGGCTCCCCCCAACACACACGCTCCCACACCTCAACAGCC < 41bp 1 0.0407330617466387 1 0.124820947647095 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP170B ENSG00000099814 CDS Human protein_coding chr14:105355938 chr14:105355929 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_29030 0 0 1 0 1 CEP170B chr14:105355852 3'AG 105355852 Downstream 78bp
chr12 6618926 6618926 1 + G T LUSC 6618914 + 6618894 6618934 41 GCCTTTCGAGCTCAGGGGCCCCTGGCTATGCTGCAGCACTT GCCTTTCGAGCTCAGGGGCCCCTGGCTATGCTTCAGCACTT < 41bp 1 0.146720960332546 1 0.066021054983139 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6618914 chr12:6618926 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_29034 0 0 1 0 2 NCAPD2 chr12:6618883 3'AG 6618883 Downstream 44bp
chr12 6618926 6618926 1 + G T LUSC 6618914 + 6618894 6618934 41 GCCTTTCGAGCTCAGGGGCCCCTGGCTATGCTGCAGCACTT GCCTTTCGAGCTCAGGGGCCCCTGGCTATGCTTCAGCACTT < 41bp 1 0.146720960332546 1 0.066021054983139 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6618914 chr12:6618926 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_29034 0 0 1 0 2 NCAPD2 chr12:6618958 5'GT 6618958 Upstream 33bp
chrX 70787360 70787360 1 + G A LUSC 70787359 + 70787339 70787379 41 CCCTATTTTAGATTCTGAAGCGTGTTCCCAATAGTGTACTC CCCTATTTTAGATTCTGAAGCATGTTCCCAATAGTGTACTC < 41bp 1 0.191996423051861 1 0.0648396015167236 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70787359 chrX:70787360 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_29035 0 0 1 0 1 OGT chrX:70787350 3'AG 70787350 Downstream 11bp
chr5 159849867 159849867 1 + C G LUSC 159849863 + 159849843 159849883 41 GTCTGTAAAGACCAAGGGACCCCTCAAACAAAAACAGCCAA GTCTGTAAAGACCAAGGGACCCCTGAAACAAAAACAGCCAA < 41bp 1 0.345237997884641 1 0.192426204681396 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTTG1 ENSG00000164611 CDS Human protein_coding chr5:159849863 chr5:159849867 synonymous SNV . 0 25 hm5C_associated_SNPs_29036 0 0 1 0 1 PTTG1 chr5:159849900 5'GT 159849900 Upstream 34bp
chr10 7785196 7785196 1 + T A LUSC 7785208 + 7785188 7785228 41 AAAAATCCTCAACCTGGTTTCTGACCCAGAATCAGGTAAAA AAAAATCCACAACCTGGTTTCTGACCCAGAATCAGGTAAAA < 41bp 1 0.121442518045363 1 0.338959902524948 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7785208 chr10:7785196 nonsynonymous SNV 0.997 4 9 hm5C_associated_SNPs_29037 0 0 0 0 2 ITIH2 chr10:7785109 3'AG 7785109 Downstream 88bp
chr10 7785196 7785196 1 + T A LUSC 7785208 + 7785188 7785228 41 AAAAATCCTCAACCTGGTTTCTGACCCAGAATCAGGTAAAA AAAAATCCACAACCTGGTTTCTGACCCAGAATCAGGTAAAA < 41bp 1 0.121442518045363 1 0.338959902524948 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7785208 chr10:7785196 nonsynonymous SNV 0.997 4 9 hm5C_associated_SNPs_29037 0 0 0 0 2 ITIH2 chr10:7785222 5'GT 7785222 Upstream 27bp
chr19 19308355 19308355 1 + C T LUSC 19308370 + 19308350 19308390 41 CCAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGC CCAGATGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGC < 41bp 1 0.376575266356144 1 0.0997674763202667 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308370 chr19:19308355 synonymous SNV . 0 6 hm5C_associated_SNPs_29038 0 0 1 0 2 RFXANK chr19:19308330 3'AG 19308330 Downstream 26bp
chr19 19308355 19308355 1 + C T LUSC 19308370 + 19308350 19308390 41 CCAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGC CCAGATGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGC < 41bp 1 0.376575266356144 1 0.0997674763202667 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308370 chr19:19308355 synonymous SNV . 0 6 hm5C_associated_SNPs_29038 0 0 1 0 2 RFXANK chr19:19308430 5'GT 19308430 Upstream 76bp
chr19 19308355 19308355 1 + C T LUSC 19308371 + 19308351 19308391 41 CAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGCC CAGATGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGCC < 41bp 1 0.293116060165924 1 0.0509238541126251 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308371 chr19:19308355 synonymous SNV . 0 5 hm5C_associated_SNPs_29039 0 0 1 0 2 RFXANK chr19:19308330 3'AG 19308330 Downstream 26bp
chr19 19308355 19308355 1 + C T LUSC 19308371 + 19308351 19308391 41 CAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGCC CAGATGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGCC < 41bp 1 0.293116060165924 1 0.0509238541126251 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308371 chr19:19308355 synonymous SNV . 0 5 hm5C_associated_SNPs_29039 0 0 1 0 2 RFXANK chr19:19308430 5'GT 19308430 Upstream 76bp
chr19 7528717 7528717 1 + G A LUSC 7528733 + 7528713 7528753 41 TCCAGAGCCTGATCTGCAGGCAGCTGGGCAGCGCCAACGGC TCCAAAGCCTGATCTGCAGGCAGCTGGGCAGCGCCAACGGC < 41bp 1 0.341290219908774 1 0.38555920124054 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7528733 chr19:7528717 synonymous SNV . 0 5 hm5C_associated_SNPs_29040 0 0 0 0 1 ARHGEF18 chr19:7528704 3'AG 7528704 Downstream 14bp
chr16 70589051 70589051 1 + A T LUSC 70589071 + 70589051 70589091 41 AGCGACAAGTGGTGATTGCCCTGACAGGAGGAGAGCTGGTC TGCGACAAGTGGTGATTGCCCTGACAGGAGGAGAGCTGGTC < 41bp 1 0.297885841759736 1 0.111404359340668 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589071 chr16:70589051 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_29041 0 0 1 0 2 SF3B3 chr16:70588954 3'AG 70588954 Downstream 98bp
chr16 70589051 70589051 1 + A T LUSC 70589071 + 70589051 70589091 41 AGCGACAAGTGGTGATTGCCCTGACAGGAGGAGAGCTGGTC TGCGACAAGTGGTGATTGCCCTGACAGGAGGAGAGCTGGTC < 41bp 1 0.297885841759736 1 0.111404359340668 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589071 chr16:70589051 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_29041 0 0 1 0 2 SF3B3 chr16:70589109 5'GT 70589109 Upstream 59bp
chr1 223943220 223943220 1 + G C LUSC 223943200 + 223943180 223943220 41 AGACACATTCTGGATGAACCCTCAGTACCTGATCAAGCTGG AGACACATTCTGGATGAACCCTCAGTACCTGATCAAGCTGC < 41bp 1 0.67460467332624 1 0.484456688165665 experiment 0.65079065334752 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943200 chr1:223943220 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_29043 0 0 1 0 1 CAPN2 chr1:223943182 3'AG 223943182 Downstream 39bp
chr1 223943220 223943220 1 + G C LUSC 223943207 + 223943187 223943227 41 TTCTGGATGAACCCTCAGTACCTGATCAAGCTGGAGGAGGA TTCTGGATGAACCCTCAGTACCTGATCAAGCTGCAGGAGGA < 41bp 1 0.430796922531069 1 0.0580410361289978 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943207 chr1:223943220 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_29044 0 0 1 0 1 CAPN2 chr1:223943182 3'AG 223943182 Downstream 39bp
chr10 118314718 118314718 1 + G T LUSC 118314708 + 118314688 118314728 41 AGGGTTGGACCCAGCAGAACCTTGCTTTCAGGGCACACCTG AGGGTTGGACCCAGCAGAACCTTGCTTTCATGGCACACCTG < 41bp 1 0.34850079769123 1 0.1512850522995 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314708 chr10:118314718 nonsynonymous SNV 0.885 1 31 hm5C_associated_SNPs_29046 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 92bp
chr10 118314718 118314718 1 + G T LUSC 118314712 + 118314692 118314732 41 TTGGACCCAGCAGAACCTTGCTTTCAGGGCACACCTGAATT TTGGACCCAGCAGAACCTTGCTTTCATGGCACACCTGAATT < 41bp 1 0.0451316810301951 1 0.0500419735908508 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314712 chr10:118314718 nonsynonymous SNV 0.885 1 27 hm5C_associated_SNPs_29047 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 92bp
chr10 118314718 118314718 1 + G T LUSC 118314721 + 118314701 118314741 41 GCAGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATT GCAGAACCTTGCTTTCATGGCACACCTGAATTAGTCCGATT < 41bp 1 0.344846913994046 1 0.07645583152771 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314721 chr10:118314718 nonsynonymous SNV 0.885 1 18 hm5C_associated_SNPs_29048 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 92bp
chr10 118314718 118314718 1 + G T LUSC 118314723 + 118314703 118314743 41 AGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGG AGAACCTTGCTTTCATGGCACACCTGAATTAGTCCGATTGG < 41bp 1 0.446209807455714 1 0.042147159576416 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314723 chr10:118314718 nonsynonymous SNV 0.885 1 16 hm5C_associated_SNPs_29049 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 92bp
chr10 118314718 118314718 1 + G T LUSC 118314725 + 118314705 118314745 41 AACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGAC AACCTTGCTTTCATGGCACACCTGAATTAGTCCGATTGGAC < 41bp 1 0.214503097409671 1 0.111430436372757 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314725 chr10:118314718 nonsynonymous SNV 0.885 1 14 hm5C_associated_SNPs_29050 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 92bp
chr10 118314718 118314718 1 + G T LUSC 118314726 + 118314706 118314746 41 ACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGACC ACCTTGCTTTCATGGCACACCTGAATTAGTCCGATTGGACC < 41bp 1 0.657107135185578 1 0.238413363695145 experiment 0.685785729628844 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314726 chr10:118314718 nonsynonymous SNV 0.885 1 13 hm5C_associated_SNPs_29051 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 92bp
chr10 118314718 118314718 1 + G T LUSC 118314736 + 118314716 118314756 41 CAGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGC CATGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGC < 41bp 1 0.433521539524961 1 0.300393253564835 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314736 chr10:118314718 nonsynonymous SNV 0.885 1 3 hm5C_associated_SNPs_29052 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 92bp
chr10 118314718 118314718 1 + G T LUSC 118314737 + 118314717 118314757 41 AGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGCC ATGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGCC < 41bp 1 0.241567715088603 1 0.139765679836273 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314737 chr10:118314718 nonsynonymous SNV 0.885 1 2 hm5C_associated_SNPs_29053 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 92bp
chr10 118314719 118314719 1 + G T LUSC 118314708 + 118314688 118314728 41 AGGGTTGGACCCAGCAGAACCTTGCTTTCAGGGCACACCTG AGGGTTGGACCCAGCAGAACCTTGCTTTCAGTGCACACCTG < 41bp 1 0.403751076092529 1 0.315926194190979 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314708 chr10:118314719 nonsynonymous SNV 0.881 4 32 hm5C_associated_SNPs_29054 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 91bp
chr10 118314719 118314719 1 + G T LUSC 118314712 + 118314692 118314732 41 TTGGACCCAGCAGAACCTTGCTTTCAGGGCACACCTGAATT TTGGACCCAGCAGAACCTTGCTTTCAGTGCACACCTGAATT < 41bp 1 0.0343889389598274 1 0.0202181041240692 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314712 chr10:118314719 nonsynonymous SNV 0.881 4 28 hm5C_associated_SNPs_29055 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 91bp
chr10 118314719 118314719 1 + G T LUSC 118314721 + 118314701 118314741 41 GCAGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATT GCAGAACCTTGCTTTCAGTGCACACCTGAATTAGTCCGATT < 41bp 1 0.285645663878826 1 0.0443530082702637 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314721 chr10:118314719 nonsynonymous SNV 0.881 4 19 hm5C_associated_SNPs_29056 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 91bp
chr10 118314719 118314719 1 + G T LUSC 118314723 + 118314703 118314743 41 AGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGG AGAACCTTGCTTTCAGTGCACACCTGAATTAGTCCGATTGG < 41bp 1 0.535940038095107 1 0.0402654409408569 experiment 0.928119923809787 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314723 chr10:118314719 nonsynonymous SNV 0.881 4 17 hm5C_associated_SNPs_29057 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 91bp
chr10 118314719 118314719 1 + G T LUSC 118314725 + 118314705 118314745 41 AACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGAC AACCTTGCTTTCAGTGCACACCTGAATTAGTCCGATTGGAC < 41bp 1 0.241274260548521 1 0.312053978443146 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314725 chr10:118314719 nonsynonymous SNV 0.881 4 15 hm5C_associated_SNPs_29058 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 91bp
chr10 118314719 118314719 1 + G T LUSC 118314726 + 118314706 118314746 41 ACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGACC ACCTTGCTTTCAGTGCACACCTGAATTAGTCCGATTGGACC < 41bp 1 0.666917377107947 1 0.497242957353592 experiment 0.666165245784107 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314726 chr10:118314719 nonsynonymous SNV 0.881 4 14 hm5C_associated_SNPs_29059 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 91bp
chr10 118314719 118314719 1 + G T LUSC 118314736 + 118314716 118314756 41 CAGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGC CAGTGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGC < 41bp 1 0.376632782917408 1 0.228259444236755 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314736 chr10:118314719 nonsynonymous SNV 0.881 4 4 hm5C_associated_SNPs_29060 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 91bp
chr10 118314719 118314719 1 + G T LUSC 118314737 + 118314717 118314757 41 AGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGCC AGTGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGCC < 41bp 1 0.279364508614847 1 0.122864753007889 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314737 chr10:118314719 nonsynonymous SNV 0.881 4 3 hm5C_associated_SNPs_29061 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 91bp
chr6 27806734 27806734 1 + G T LUSC 27806746 + 27806726 27806766 41 AGACGGCCGTGCGCCTGCTGCTGCCAGGGGAGCTGGCCAAG AGACGGCCTTGCGCCTGCTGCTGCCAGGGGAGCTGGCCAAG < 41bp 1 0.591934556786545 1 0.105237513780594 experiment 0.81613088642691 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806746 chr6:27806734 nonsynonymous SNV 0.992 0 9 hm5C_associated_SNPs_29062 0 0 1 0 1 HIST1H2BN chr6:27806816 5'GT 27806816 Upstream 83bp
chr15 63019364 63019364 1 + G T LUSC 63019352 + 63019332 63019372 41 GCTCCTCCATGGCACAGCTGCTGACCTGTGCTGCTCAAGGC GCTCCTCCATGGCACAGCTGCTGACCTGTGCTTCTCAAGGC < 41bp 1 0.130109083006605 1 0.138373911380768 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63019352 chr15:63019364 nonsynonymous SNV 0.990 1 33 hm5C_associated_SNPs_29064 0 0 0 0 2 TLN2 chr15:63019286 3'AG 63019286 Downstream 79bp
chr15 63019364 63019364 1 + G T LUSC 63019352 + 63019332 63019372 41 GCTCCTCCATGGCACAGCTGCTGACCTGTGCTGCTCAAGGC GCTCCTCCATGGCACAGCTGCTGACCTGTGCTTCTCAAGGC < 41bp 1 0.130109083006605 1 0.138373911380768 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63019352 chr15:63019364 nonsynonymous SNV 0.990 1 33 hm5C_associated_SNPs_29064 0 0 0 0 2 TLN2 chr15:63019388 5'GT 63019388 Upstream 25bp
chr14 94568211 94568211 1 + C A LUSC 94568191 + 94568171 94568211 41 GGGACTGTGCTCGTGGCGCTCAGTGCCATGGGCTTCACCTC GGGACTGTGCTCGTGGCGCTCAGTGCCATGGGCTTCACCTA < 41bp 1 0.735141564248428 1 0.75248771905899 experiment 0.529716871503144 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFI27L1 ENSG00000165948 CDS Human protein_coding chr14:94568191 chr14:94568211 stopgain 0.000 0 41 hm5C_associated_SNPs_29065 0 0 1 0 1 IFI27L1 chr14:94568160 3'AG 94568160 Downstream 52bp
chr22 30818321 30818321 1 + C T LUSC 30818334 + 30818314 30818354 41 TCAATTTCACTGTGGAGGTCCTGCTTCCAGACAAAGCCTCA TCAATTTTACTGTGGAGGTCCTGCTTCCAGACAAAGCCTCA < 41bp 1 0.203439474004772 1 0.137955993413925 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC14L2 ENSG00000100003 CDS Human protein_coding chr22:30818334 chr22:30818321 synonymous SNV . 0 8 hm5C_associated_SNPs_29066 0 0 0 1 1 SEC14L2 chr22:30818266 3'AG 30818266 Downstream 56bp
chr7 44801184 44801184 1 + G A LUSC 44801172 + 44801152 44801192 41 TTCCAGCTGCGAGACTCAGTCTACAAGACCCTGATAATGAG TTCCAGCTGCGAGACTCAGTCTACAAGACCCTAATAATGAG < 41bp 1 0.609526575823136 1 0.88629949092865 experiment 0.780946848353727 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44801172 chr7:44801184 synonymous SNV . 0 33 hm5C_associated_SNPs_29068 0 0 1 0 1 ZMIZ2 chr7:44801192 5'GT 44801192 Upstream 9bp
chr20 55968354 55968354 1 + G T LUSC 55968352 + 55968332 55968372 41 TAGGCTTTGCCATTGGGGTGCAGCAGCTGCACCCCACCTTG TAGGCTTTGCCATTGGGGTGCATCAGCTGCACCCCACCTTG < 41bp 1 0.168309445823761 1 0.0490858256816864 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968352 chr20:55968354 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_29069 0 0 1 0 2 RBM38 chr20:55968335 3'AG 55968335 Downstream 20bp
chr20 55968354 55968354 1 + G T LUSC 55968352 + 55968332 55968372 41 TAGGCTTTGCCATTGGGGTGCAGCAGCTGCACCCCACCTTG TAGGCTTTGCCATTGGGGTGCATCAGCTGCACCCCACCTTG < 41bp 1 0.168309445823761 1 0.0490858256816864 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968352 chr20:55968354 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_29069 0 0 1 0 2 RBM38 chr20:55968389 5'GT 55968389 Upstream 36bp
chr20 55968354 55968354 1 + G T LUSC 55968361 + 55968341 55968381 41 CCATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGG CCATTGGGGTGCATCAGCTGCACCCCACCTTGATCCAGCGG < 41bp 1 0.0845508698693556 1 0.106679499149323 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968361 chr20:55968354 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_29070 0 0 1 0 2 RBM38 chr20:55968335 3'AG 55968335 Downstream 20bp
chr20 55968354 55968354 1 + G T LUSC 55968361 + 55968341 55968381 41 CCATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGG CCATTGGGGTGCATCAGCTGCACCCCACCTTGATCCAGCGG < 41bp 1 0.0845508698693556 1 0.106679499149323 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968361 chr20:55968354 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_29070 0 0 1 0 2 RBM38 chr20:55968389 5'GT 55968389 Upstream 36bp
chr20 55968354 55968354 1 + G T LUSC 55968363 + 55968343 55968383 41 ATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGAC ATTGGGGTGCATCAGCTGCACCCCACCTTGATCCAGCGGAC < 41bp 1 0.290774144234464 1 0.155918061733246 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968363 chr20:55968354 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_29071 0 0 1 0 2 RBM38 chr20:55968335 3'AG 55968335 Downstream 20bp
chr20 55968354 55968354 1 + G T LUSC 55968363 + 55968343 55968383 41 ATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGAC ATTGGGGTGCATCAGCTGCACCCCACCTTGATCCAGCGGAC < 41bp 1 0.290774144234464 1 0.155918061733246 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968363 chr20:55968354 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_29071 0 0 1 0 2 RBM38 chr20:55968389 5'GT 55968389 Upstream 36bp
chr20 55968354 55968354 1 + G T LUSC 55968364 + 55968344 55968384 41 TTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACT TTGGGGTGCATCAGCTGCACCCCACCTTGATCCAGCGGACT < 41bp 1 0.0180778131531267 1 0.103959500789642 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968364 chr20:55968354 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_29072 0 0 1 0 2 RBM38 chr20:55968335 3'AG 55968335 Downstream 20bp
chr20 55968354 55968354 1 + G T LUSC 55968364 + 55968344 55968384 41 TTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACT TTGGGGTGCATCAGCTGCACCCCACCTTGATCCAGCGGACT < 41bp 1 0.0180778131531267 1 0.103959500789642 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968364 chr20:55968354 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_29072 0 0 1 0 2 RBM38 chr20:55968389 5'GT 55968389 Upstream 36bp
chr20 55968354 55968354 1 + G T LUSC 55968365 + 55968345 55968385 41 TGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACTT TGGGGTGCATCAGCTGCACCCCACCTTGATCCAGCGGACTT < 41bp 1 0.0675403300613662 1 0.0890116989612579 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968365 chr20:55968354 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_29073 0 0 1 0 2 RBM38 chr20:55968335 3'AG 55968335 Downstream 20bp
chr20 55968354 55968354 1 + G T LUSC 55968365 + 55968345 55968385 41 TGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACTT TGGGGTGCATCAGCTGCACCCCACCTTGATCCAGCGGACTT < 41bp 1 0.0675403300613662 1 0.0890116989612579 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968365 chr20:55968354 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_29073 0 0 1 0 2 RBM38 chr20:55968389 5'GT 55968389 Upstream 36bp
chr20 55968354 55968354 1 + G T LUSC 55968366 + 55968346 55968386 41 GGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACTTA GGGGTGCATCAGCTGCACCCCACCTTGATCCAGCGGACTTA < 41bp 1 0.198570301636669 1 0.241634219884872 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968366 chr20:55968354 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_29074 0 0 1 0 2 RBM38 chr20:55968335 3'AG 55968335 Downstream 20bp
chr20 55968354 55968354 1 + G T LUSC 55968366 + 55968346 55968386 41 GGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACTTA GGGGTGCATCAGCTGCACCCCACCTTGATCCAGCGGACTTA < 41bp 1 0.198570301636669 1 0.241634219884872 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968366 chr20:55968354 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_29074 0 0 1 0 2 RBM38 chr20:55968389 5'GT 55968389 Upstream 36bp
chr12 66724969 66724969 1 + G A LUSC 66724950 + 66724930 66724970 41 CCAGGGGTCCGAGGAGCAAACAGTTGTCTATGTGGTGGGGA CCAGGGGTCCGAGGAGCAAACAGTTGTCTATGTGGTGGGAA < 41bp 1 0.630610847000248 1 0.411431878805161 experiment 0.738778305999503 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HELB ENSG00000127311 CDS Human protein_coding chr12:66724950 chr12:66724969 synonymous SNV . 0 40 hm5C_associated_SNPs_29076 0 0 1 0 1 HELB chr12:66724934 3'AG 66724934 Downstream 36bp
chr17 48595048 48595048 1 + G C LUSC 48595045 + 48595025 48595065 41 TTAAGAGAATTGCACTTGCTCGAGGGAACACCCAGGTTTGT TTAAGAGAATTGCACTTGCTCGACGGAACACCCAGGTTTGT < 41bp 1 0.57299936681882 1 0.409799605607986 experiment 0.85400126636236 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MYCBPAP ENSG00000136449 CDS Human protein_coding chr17:48595045 chr17:48595048 nonsynonymous SNV 0.982 2 24 hm5C_associated_SNPs_29077 0 0 0 0 2 MYCBPAP chr17:48594956 3'AG 48594956 Downstream 93bp
chr17 48595048 48595048 1 + G C LUSC 48595045 + 48595025 48595065 41 TTAAGAGAATTGCACTTGCTCGAGGGAACACCCAGGTTTGT TTAAGAGAATTGCACTTGCTCGACGGAACACCCAGGTTTGT < 41bp 1 0.57299936681882 1 0.409799605607986 experiment 0.85400126636236 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MYCBPAP ENSG00000136449 CDS Human protein_coding chr17:48595045 chr17:48595048 nonsynonymous SNV 0.982 2 24 hm5C_associated_SNPs_29077 0 0 0 0 2 MYCBPAP chr17:48595059 5'GT 48595059 Upstream 12bp
chr13 98654843 98654843 1 + C A LUSC 98654834 + 98654814 98654854 41 TAAATTTTGTTTTACTTTTTCTCCAGGATCCTGTAAGTACC TAAATTTTGTTTTACTTTTTCTCCAGGATACTGTAAGTACC < 41bp 1 0.566392658013136 1 0.903576374053955 experiment 0.867214683973728 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IPO5 ENSG00000065150 CDS Human protein_coding chr13:98654834 chr13:98654843 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_29078 0 0 1 0 1 IPO5 chr13:98654845 5'GT 98654845 Upstream 3bp
chr6 42975977 42975977 1 + A C LUSC 42975958 + 42975938 42975978 41 GGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGAG GGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGCG < 41bp 1 0.273251533470493 1 0.0647311508655548 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975958 chr6:42975977 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_29079 0 0 1 0 2 PPP2R5D chr6:42975939 3'AG 42975939 Downstream 39bp
chr6 42975977 42975977 1 + A C LUSC 42975958 + 42975938 42975978 41 GGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGAG GGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGCG < 41bp 1 0.273251533470493 1 0.0647311508655548 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975958 chr6:42975977 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_29079 0 0 1 0 2 PPP2R5D chr6:42975998 5'GT 42975998 Upstream 22bp
chr6 42975977 42975977 1 + A C LUSC 42975996 + 42975976 42976016 41 GAGCTCCTGGAGATCCTGGGCAGGTGAGAGGCCGGGTGGGG GCGCTCCTGGAGATCCTGGGCAGGTGAGAGGCCGGGTGGGG < 41bp 1 0.700134042516351 1 0.561451315879822 experiment 0.599731914967298 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975996 chr6:42975977 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_29080 0 0 1 0 2 PPP2R5D chr6:42975939 3'AG 42975939 Downstream 39bp
chr6 42975977 42975977 1 + A C LUSC 42975996 + 42975976 42976016 41 GAGCTCCTGGAGATCCTGGGCAGGTGAGAGGCCGGGTGGGG GCGCTCCTGGAGATCCTGGGCAGGTGAGAGGCCGGGTGGGG < 41bp 1 0.700134042516351 1 0.561451315879822 experiment 0.599731914967298 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975996 chr6:42975977 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_29080 0 0 1 0 2 PPP2R5D chr6:42975998 5'GT 42975998 Upstream 22bp
chr9 133507341 133507341 1 + A G LUSC 133507332 + 133507312 133507352 41 CTTTTACCTTTTCCCAGTACCTTTCCTCCAAGGAGCTCCGG CTTTTACCTTTTCCCAGTACCTTTCCTCCGAGGAGCTCCGG < 41bp 1 0.0571710700968052 1 0.0363085269927979 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133507332 chr9:133507341 synonymous SNV . 0 30 hm5C_associated_SNPs_29081 0 0 1 0 2 FUBP3 chr9:133507329 3'AG 133507329 Downstream 13bp
chr9 133507341 133507341 1 + A G LUSC 133507332 + 133507312 133507352 41 CTTTTACCTTTTCCCAGTACCTTTCCTCCAAGGAGCTCCGG CTTTTACCTTTTCCCAGTACCTTTCCTCCGAGGAGCTCCGG < 41bp 1 0.0571710700968052 1 0.0363085269927979 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133507332 chr9:133507341 synonymous SNV . 0 30 hm5C_associated_SNPs_29081 0 0 1 0 2 FUBP3 chr9:133507409 5'GT 133507409 Upstream 69bp
chr7 100466148 100466148 1 + G T LUSC 100466155 + 100466135 100466175 41 CCTCCTGCCTACCGCACGGGCTCCCTGAAGCCAAATCCAGC CCTCCTGCCTACCTCACGGGCTCCCTGAAGCCAAATCCAGC < 41bp 1 0.158894740686435 1 0.0174156427383423 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100466155 chr7:100466148 nonsynonymous SNV 0.279 0 14 hm5C_associated_SNPs_29082 0 0 0 0 1 TRIP6 chr7:100466117 3'AG 100466117 Downstream 32bp
chr19 19638848 19638848 1 + G T LUSC 19638852 + 19638832 19638872 41 TCCACACAACCCGCTGGGTGCCCCCCTTGATCGGGGAGCTG TCCACACAACCCGCTGTGTGCCCCCCTTGATCGGGGAGCTG < 41bp 1 0.17859876738086 1 0.0209019184112549 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19638852 chr19:19638848 nonsynonymous SNV 0.437 4 17 hm5C_associated_SNPs_29086 0 0 1 0 2 NDUFA13 chr19:19638816 3'AG 19638816 Downstream 33bp
chr19 19638848 19638848 1 + G T LUSC 19638852 + 19638832 19638872 41 TCCACACAACCCGCTGGGTGCCCCCCTTGATCGGGGAGCTG TCCACACAACCCGCTGTGTGCCCCCCTTGATCGGGGAGCTG < 41bp 1 0.17859876738086 1 0.0209019184112549 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19638852 chr19:19638848 nonsynonymous SNV 0.437 4 17 hm5C_associated_SNPs_29086 0 0 1 0 2 NDUFA13 chr19:19638925 5'GT 19638925 Upstream 78bp
chr20 44673662 44673662 1 + A G LUSC 44673677 + 44673657 44673697 41 TCTCCATGGGTAATTGTCATCGGATCCTTCTTCTCCACCTG TCTCCGTGGGTAATTGTCATCGGATCCTTCTTCTCCACCTG < 41bp 1 0.558423877778775 1 0.84635066986084 experiment 0.883152244442451 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44673677 chr20:44673662 synonymous SNV . 0 6 hm5C_associated_SNPs_29087 0 0 0 0 1 SLC12A5 chr20:44673605 3'AG 44673605 Downstream 58bp
chr13 26956969 26956969 1 + G T LUSC 26956984 + 26956964 26957004 41 TTTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAA TTTTATTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAA < 41bp 1 0.207800949186099 1 0.143760293722153 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CDK8 ENSG00000132964 CDS Human protein_coding chr13:26956984 chr13:26956969 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_29088 0 0 1 0 2 CDK8 chr13:26956951 3'AG 26956951 Downstream 19bp
chr13 26956969 26956969 1 + G T LUSC 26956984 + 26956964 26957004 41 TTTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAA TTTTATTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAA < 41bp 1 0.207800949186099 1 0.143760293722153 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CDK8 ENSG00000132964 CDS Human protein_coding chr13:26956984 chr13:26956969 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_29088 0 0 1 0 2 CDK8 chr13:26957008 5'GT 26957008 Upstream 40bp
chr1 37947340 37947340 1 + T C LUSC 37947350 + 37947330 37947370 41 GGGATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGG GGGATCGTGGCTTCCAACGACACATACCGTGACCTCCAAGG < 41bp 1 0.260893569333337 1 0.189013183116913 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947350 chr1:37947340 nonsynonymous SNV 0.992 4 11 hm5C_associated_SNPs_29091 0 0 0 0 1 ZC3H12A chr1:37947436 5'GT 37947436 Upstream 97bp
chr1 37947340 37947340 1 + T C LUSC 37947352 + 37947332 37947372 41 GATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGGCG GATCGTGGCTTCCAACGACACATACCGTGACCTCCAAGGCG < 41bp 1 0.135710169047654 1 0.0978012382984161 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947352 chr1:37947340 nonsynonymous SNV 0.992 4 9 hm5C_associated_SNPs_29092 0 0 0 0 1 ZC3H12A chr1:37947436 5'GT 37947436 Upstream 97bp
chr12 94562982 94562982 1 + C A LUSC 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATACATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT < 41bp 1 0.0548479835003925 1 0.0634486079216003 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94562982 synonymous SNV . 0 3 hm5C_associated_SNPs_29093 0 0 1 0 2 PLXNC1 chr12:94562929 3'AG 94562929 Downstream 54bp
chr12 94562982 94562982 1 + C A LUSC 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATACATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT < 41bp 1 0.0548479835003925 1 0.0634486079216003 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94562982 synonymous SNV . 0 3 hm5C_associated_SNPs_29093 0 0 1 0 2 PLXNC1 chr12:94563069 5'GT 94563069 Upstream 88bp
chr5 10254914 10254914 1 + G T LUSC 10254899 + 10254879 10254919 41 TTGCCAAGCTGATGGTGGAACTGTCCAAGTCTCAGGATGAT TTGCCAAGCTGATGGTGGAACTGTCCAAGTCTCAGTATGAT < 41bp 1 0.123354394256932 1 0.0844016373157501 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10254899 chr5:10254914 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_29096 0 0 1 0 1 CCT5 chr5:10254950 5'GT 10254950 Upstream 37bp
chr5 10254914 10254914 1 + G T LUSC 10254903 + 10254883 10254923 41 CAAGCTGATGGTGGAACTGTCCAAGTCTCAGGATGATGAAA CAAGCTGATGGTGGAACTGTCCAAGTCTCAGTATGATGAAA < 41bp 1 0.260800059268405 1 0.222872763872147 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10254903 chr5:10254914 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_29097 0 0 1 0 1 CCT5 chr5:10254950 5'GT 10254950 Upstream 37bp
chr5 10254914 10254914 1 + G T LUSC 10254909 + 10254889 10254929 41 GATGGTGGAACTGTCCAAGTCTCAGGATGATGAAATTGGAG GATGGTGGAACTGTCCAAGTCTCAGTATGATGAAATTGGAG < 41bp 1 0.561144492012396 1 0.599666595458984 experiment 0.877711015975208 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10254909 chr5:10254914 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_29098 0 0 1 0 1 CCT5 chr5:10254950 5'GT 10254950 Upstream 37bp
chr19 11114047 11114047 1 + G T LUSC 11114029 + 11114009 11114049 41 TTTCTAGGTATGAAGTAGCTCCGAGGTCTGATAGTGAAGAA TTTCTAGGTATGAAGTAGCTCCGAGGTCTGATAGTGAATAA < 41bp 1 0.248932973608959 1 0.355674058198929 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114029 chr19:11114047 stopgain 1.000 1 39 hm5C_associated_SNPs_29099 0 0 1 0 2 SMARCA4 chr19:11114016 3'AG 11114016 Downstream 32bp
chr19 11114047 11114047 1 + G T LUSC 11114029 + 11114009 11114049 41 TTTCTAGGTATGAAGTAGCTCCGAGGTCTGATAGTGAAGAA TTTCTAGGTATGAAGTAGCTCCGAGGTCTGATAGTGAATAA < 41bp 1 0.248932973608959 1 0.355674058198929 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114029 chr19:11114047 stopgain 1.000 1 39 hm5C_associated_SNPs_29099 0 0 1 0 2 SMARCA4 chr19:11114073 5'GT 11114073 Upstream 27bp
chr19 11114047 11114047 1 + G T LUSC 11114036 + 11114016 11114056 41 GTATGAAGTAGCTCCGAGGTCTGATAGTGAAGAAAGTGGCT GTATGAAGTAGCTCCGAGGTCTGATAGTGAATAAAGTGGCT < 41bp 1 0.151715001471347 1 0.121902942657471 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114036 chr19:11114047 stopgain 1.000 1 32 hm5C_associated_SNPs_29100 0 0 1 0 2 SMARCA4 chr19:11114016 3'AG 11114016 Downstream 32bp
chr19 11114047 11114047 1 + G T LUSC 11114036 + 11114016 11114056 41 GTATGAAGTAGCTCCGAGGTCTGATAGTGAAGAAAGTGGCT GTATGAAGTAGCTCCGAGGTCTGATAGTGAATAAAGTGGCT < 41bp 1 0.151715001471347 1 0.121902942657471 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114036 chr19:11114047 stopgain 1.000 1 32 hm5C_associated_SNPs_29100 0 0 1 0 2 SMARCA4 chr19:11114073 5'GT 11114073 Upstream 27bp
chr19 11114047 11114047 1 + G T LUSC 11114055 + 11114035 11114075 41 TCTGATAGTGAAGAAAGTGGCTCAGAAGAAGAGGAAGAGGT TCTGATAGTGAATAAAGTGGCTCAGAAGAAGAGGAAGAGGT < 41bp 1 0.190448892434584 1 0.15461802482605 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114055 chr19:11114047 stopgain 1.000 1 13 hm5C_associated_SNPs_29101 0 0 1 0 2 SMARCA4 chr19:11114016 3'AG 11114016 Downstream 32bp
chr19 11114047 11114047 1 + G T LUSC 11114055 + 11114035 11114075 41 TCTGATAGTGAAGAAAGTGGCTCAGAAGAAGAGGAAGAGGT TCTGATAGTGAATAAAGTGGCTCAGAAGAAGAGGAAGAGGT < 41bp 1 0.190448892434584 1 0.15461802482605 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114055 chr19:11114047 stopgain 1.000 1 13 hm5C_associated_SNPs_29101 0 0 1 0 2 SMARCA4 chr19:11114073 5'GT 11114073 Upstream 27bp
chr19 11114047 11114047 1 + G T LUSC 11114057 + 11114037 11114077 41 TGATAGTGAAGAAAGTGGCTCAGAAGAAGAGGAAGAGGTAA TGATAGTGAATAAAGTGGCTCAGAAGAAGAGGAAGAGGTAA < 41bp 1 0.318417705570247 1 0.399770021438599 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114057 chr19:11114047 stopgain 1.000 1 11 hm5C_associated_SNPs_29102 0 0 1 0 2 SMARCA4 chr19:11114016 3'AG 11114016 Downstream 32bp
chr19 11114047 11114047 1 + G T LUSC 11114057 + 11114037 11114077 41 TGATAGTGAAGAAAGTGGCTCAGAAGAAGAGGAAGAGGTAA TGATAGTGAATAAAGTGGCTCAGAAGAAGAGGAAGAGGTAA < 41bp 1 0.318417705570247 1 0.399770021438599 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114057 chr19:11114047 stopgain 1.000 1 11 hm5C_associated_SNPs_29102 0 0 1 0 2 SMARCA4 chr19:11114073 5'GT 11114073 Upstream 27bp
chr7 114302136 114302136 1 + A G LUSC 114302124 + 114302104 114302144 41 CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCTTAGCC CTTCTGTCTGCTTTAGAATGCAGTACGTCATAGTCTTAGCC < 41bp 1 0.228226197449444 1 0.30824401974678 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXP2 ENSG00000128573 CDS Human protein_coding chr7:114302124 chr7:114302136 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_29103 0 0 1 3 1 FOXP2 chr7:114302120 3'AG 114302120 Downstream 17bp
chr16 57243027 57243027 1 + T G LUSC 57243043 + 57243023 57243063 41 GAGTTATTCCACTGGAAGATCCACTGGGACCAGCTGTTATA GAGTGATTCCACTGGAAGATCCACTGGGACCAGCTGTTATA < 41bp 1 0.181129401721725 1 0.0663314461708069 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57243043 chr16:57243027 synonymous SNV . 0 5 hm5C_associated_SNPs_29104 0 0 1 0 2 RSPRY1 chr16:57242987 3'AG 57242987 Downstream 41bp
chr16 57243027 57243027 1 + T G LUSC 57243043 + 57243023 57243063 41 GAGTTATTCCACTGGAAGATCCACTGGGACCAGCTGTTATA GAGTGATTCCACTGGAAGATCCACTGGGACCAGCTGTTATA < 41bp 1 0.181129401721725 1 0.0663314461708069 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57243043 chr16:57243027 synonymous SNV . 0 5 hm5C_associated_SNPs_29104 0 0 1 0 2 RSPRY1 chr16:57243099 5'GT 57243099 Upstream 73bp
chr11 66282108 66282108 1 + C G LUSC 66282089 + 66282069 66282109 41 CTCAGACCCTACTTCAAGTTCAGCCTGCCCCAATTGCCTCC CTCAGACCCTACTTCAAGTTCAGCCTGCCCCAATTGCCTGC < 41bp 1 0.387433504593539 1 0.0917984545230865 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66282089 chr11:66282108 nonsynonymous SNV 0.932 1 40 hm5C_associated_SNPs_29105 0 0 1 0 1 BBS1 chr11:66282149 5'GT 66282149 Upstream 42bp
chr4 57881725 57881725 1 + C T LUSC 57881714 + 57881694 57881734 41 GAGGGAGATTCGGATCTATACGGATGCAGGCCGTATTTGTA GAGGGAGATTCGGATCTATACGGATGCAGGCTGTATTTGTA < 41bp 1 0.631756023172699 1 0.732862532138824 experiment 0.736487953654603 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57881714 chr4:57881725 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_29106 0 0 1 0 2 POLR2B chr4:57881668 3'AG 57881668 Downstream 58bp
chr4 57881725 57881725 1 + C T LUSC 57881714 + 57881694 57881734 41 GAGGGAGATTCGGATCTATACGGATGCAGGCCGTATTTGTA GAGGGAGATTCGGATCTATACGGATGCAGGCTGTATTTGTA < 41bp 1 0.631756023172699 1 0.732862532138824 experiment 0.736487953654603 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57881714 chr4:57881725 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_29106 0 0 1 0 2 POLR2B chr4:57881822 5'GT 57881822 Upstream 98bp
chr22 24573530 24573530 1 + G A LUSC 24573545 + 24573525 24573565 41 AGTGAGACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAG AGTGAAACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAG < 41bp 1 0.0909018271077343 1 0.352539956569672 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573545 chr22:24573530 synonymous SNV . 0 6 hm5C_associated_SNPs_29108 0 0 1 0 1 CABIN1 chr22:24573472 3'AG 24573472 Downstream 59bp
chr22 24573530 24573530 1 + G A LUSC 24573547 + 24573527 24573567 41 TGAGACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCT TGAAACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCT < 41bp 1 0.126611242657077 1 0.345319598913193 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573547 chr22:24573530 synonymous SNV . 0 4 hm5C_associated_SNPs_29109 0 0 1 0 1 CABIN1 chr22:24573472 3'AG 24573472 Downstream 59bp
chr22 24573530 24573530 1 + G A LUSC 24573549 + 24573529 24573569 41 AGACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCC AAACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCC < 41bp 1 0.14104660375314 1 0.505959451198578 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573549 chr22:24573530 synonymous SNV . 0 2 hm5C_associated_SNPs_29110 0 0 1 0 1 CABIN1 chr22:24573472 3'AG 24573472 Downstream 59bp
chr22 24573530 24573530 1 + G A LUSC 24573550 + 24573530 24573570 41 GACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCCA AACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCCA < 41bp 1 0.190470473175298 1 0.403825342655182 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573550 chr22:24573530 synonymous SNV . 0 1 hm5C_associated_SNPs_29111 0 0 1 0 1 CABIN1 chr22:24573472 3'AG 24573472 Downstream 59bp
chr1 24018318 24018318 1 + C T LUSC 24018298 + 24018278 24018318 41 GGCCGGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGC GGCCGGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGT < 41bp 1 0.3944531079849 1 0.444456368684769 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24018298 chr1:24018318 nonsynonymous SNV 1.000 0 41 hm5C_associated_SNPs_29112 0 0 1 0 1 RPL11 chr1:24018319 5'GT 24018319 Upstream 2bp
chr1 24018318 24018318 1 + C T LUSC 24018301 + 24018281 24018321 41 CGGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGCGGT CGGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGTGGT < 41bp 1 0.267185095842828 1 0.113029718399048 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24018301 chr1:24018318 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_29113 0 0 1 0 1 RPL11 chr1:24018319 5'GT 24018319 Upstream 2bp
chr1 24018318 24018318 1 + C T LUSC 24018302 + 24018282 24018322 41 GGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGCGGTG GGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGTGGTG < 41bp 1 0.425912165497793 1 0.0778849422931671 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24018302 chr1:24018318 nonsynonymous SNV 1.000 0 37 hm5C_associated_SNPs_29114 0 0 1 0 1 RPL11 chr1:24018319 5'GT 24018319 Upstream 2bp
chr14 60592500 60592500 1 + G A LUSC 60592489 + 60592469 60592509 41 TGATGAAAAGTGGAAGGAAGCAATTTTACAAGAAAAGCCAT TGATGAAAAGTGGAAGGAAGCAATTTTACAAAAAAAGCCAT < 41bp 1 0.274576597703254 1 0.253730893135071 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60592489 chr14:60592500 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_29115 0 0 1 2 1 PCNX4 chr14:60592541 5'GT 60592541 Upstream 42bp
chr17 48433473 48433473 1 + A T LUSC 48433472 + 48433452 48433492 41 TTCCACACGGTGCTGGAGAACAGCCTGGCCTGTGAGACCCT TTCCACACGGTGCTGGAGAACTGCCTGGCCTGTGAGACCCT < 41bp 1 0.40297027067919 1 0.20985621213913 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48433472 chr17:48433473 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_29116 0 0 1 0 1 XYLT2 chr17:48433446 3'AG 48433446 Downstream 28bp
chr12 7177221 7177221 1 + G C LUSC 7177213 + 7177193 7177233 41 ACAGAGGATAATTGGAGGATCCGATGCAGATATTAAAAACT ACAGAGGATAATTGGAGGATCCGATGCACATATTAAAAACT < 41bp 1 0.0982238282739958 1 0.138712137937546 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C1S ENSG00000182326 CDS Human protein_coding chr12:7177213 chr12:7177221 nonsynonymous SNV 0.002 2 29 hm5C_associated_SNPs_29117 0 0 0 0 1 C1S chr12:7177159 3'AG 7177159 Downstream 63bp
chr20 39978501 39978501 1 + C T LUSC 39978516 + 39978496 39978536 41 GAGTCCCACATGCAGTGGGCCTGGGGGAGGCTGCCTAAGGT GAGTCTCACATGCAGTGGGCCTGGGGGAGGCTGCCTAAGGT < 41bp 1 0.657644362104118 1 0.568420827388763 experiment 0.684711275791764 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39978516 chr20:39978501 synonymous SNV . 0 6 hm5C_associated_SNPs_29118 0 0 1 0 2 LPIN3 chr20:39978414 3'AG 39978414 Downstream 88bp
chr20 39978501 39978501 1 + C T LUSC 39978516 + 39978496 39978536 41 GAGTCCCACATGCAGTGGGCCTGGGGGAGGCTGCCTAAGGT GAGTCTCACATGCAGTGGGCCTGGGGGAGGCTGCCTAAGGT < 41bp 1 0.657644362104118 1 0.568420827388763 experiment 0.684711275791764 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39978516 chr20:39978501 synonymous SNV . 0 6 hm5C_associated_SNPs_29118 0 0 1 0 2 LPIN3 chr20:39978534 5'GT 39978534 Upstream 34bp
chr5 7889289 7889289 1 + G T LUSC 7889293 + 7889273 7889313 41 GTGCAGTAAACAAGGGGCAGCCGATTATAGCCGCTTTGTAC GTGCAGTAAACAAGGGTCAGCCGATTATAGCCGCTTTGTAC < 41bp 1 0.258033721534853 1 0.0744639337062836 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7889293 chr5:7889289 nonsynonymous SNV 0.003 0 17 hm5C_associated_SNPs_29123 0 0 0 0 2 MTRR chr5:7889208 3'AG 7889208 Downstream 82bp
chr5 7889289 7889289 1 + G T LUSC 7889293 + 7889273 7889313 41 GTGCAGTAAACAAGGGGCAGCCGATTATAGCCGCTTTGTAC GTGCAGTAAACAAGGGTCAGCCGATTATAGCCGCTTTGTAC < 41bp 1 0.258033721534853 1 0.0744639337062836 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7889293 chr5:7889289 nonsynonymous SNV 0.003 0 17 hm5C_associated_SNPs_29123 0 0 0 0 2 MTRR chr5:7889388 5'GT 7889388 Upstream 100bp
chr2 160031616 160031616 1 + G A LUSC 160031614 + 160031594 160031634 41 AGCCCCAACTACAGAGCATGCTGAGCCTCCGATCCTGTGTG AGCCCCAACTACAGAGCATGCTAAGCCTCCGATCCTGTGTG < 41bp 1 0.361863158955224 1 0.0805427134037018 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160031614 chr2:160031616 synonymous SNV . 0 23 hm5C_associated_SNPs_29124 0 0 0 0 1 TANC1 chr2:160031695 5'GT 160031695 Upstream 80bp
chr19 35504575 35504575 1 + A G LUSC 35504562 + 35504542 35504582 41 CGTGGCCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGA CGTGGCCATGTCACGCCCAACCTTTCCCGAGCCGGCAGCGA < 41bp 1 0.0242661441727164 1 0.0674387216567993 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504562 chr19:35504575 nonsynonymous SNV 0.990 0 34 hm5C_associated_SNPs_29125 0 0 1 0 1 GRAMD1A chr19:35504595 5'GT 35504595 Upstream 21bp
chr19 35504575 35504575 1 + A G LUSC 35504567 + 35504547 35504587 41 CCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGACGCAG CCATGTCACGCCCAACCTTTCCCGAGCCGGCAGCGACGCAG < 41bp 1 0.77704135437042 1 0.223121166229248 experiment 0.445917291259159 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504567 chr19:35504575 nonsynonymous SNV 0.990 0 29 hm5C_associated_SNPs_29126 0 0 1 0 1 GRAMD1A chr19:35504595 5'GT 35504595 Upstream 21bp
chr19 35504576 35504576 1 + G T LUSC 35504562 + 35504542 35504582 41 CGTGGCCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGA CGTGGCCATGTCACGCCCAACCTTTCCCGAGCCATCAGCGA < 41bp 1 0.0217924319395752 1 0.0338573157787323 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504562 chr19:35504576 nonsynonymous SNV 0.994 2 35 hm5C_associated_SNPs_29127 0 0 1 0 1 GRAMD1A chr19:35504595 5'GT 35504595 Upstream 20bp
chr19 35504576 35504576 1 + G T LUSC 35504567 + 35504547 35504587 41 CCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGACGCAG CCATGTCACGCCCAACCTTTCCCGAGCCATCAGCGACGCAG < 41bp 1 0.742165534398796 1 0.155957937240601 experiment 0.515668931202408 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504567 chr19:35504576 nonsynonymous SNV 0.994 2 30 hm5C_associated_SNPs_29128 0 0 1 0 1 GRAMD1A chr19:35504595 5'GT 35504595 Upstream 20bp
chr14 23311854 23311854 1 + G T LUSC 23311874 + 23311854 23311894 41 GGCCCCAACATTGGAGGAGACACCCACTTTGACTCTGCCGA TGCCCCAACATTGGAGGAGACACCCACTTTGACTCTGCCGA < 41bp 1 0.258158886360453 1 0.0645086467266083 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP14 ENSG00000157227 CDS Human protein_coding chr14:23311874 chr14:23311854 nonsynonymous SNV 0.988 4 1 hm5C_associated_SNPs_29130 0 0 0 0 1 MMP14 chr14:23311926 5'GT 23311926 Upstream 73bp
chr6 42603239 42603239 1 + A G LUSC 42603221 + 42603201 42603241 41 GAACCAGAGTGGGAAGCAGCCTTCACACTACAAATGAAATT GAACCAGAGTGGGAAGCAGCCTTCACACTACAAATGAAGTT < 41bp 1 0.35749475189811 1 0.217144817113876 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBR2 ENSG00000024048 CDS Human protein_coding chr6:42603221 chr6:42603239 synonymous SNV . 0 39 hm5C_associated_SNPs_29131 0 0 1 1 2 UBR2 chr6:42603156 3'AG 42603156 Downstream 84bp
chr6 42603239 42603239 1 + A G LUSC 42603221 + 42603201 42603241 41 GAACCAGAGTGGGAAGCAGCCTTCACACTACAAATGAAATT GAACCAGAGTGGGAAGCAGCCTTCACACTACAAATGAAGTT < 41bp 1 0.35749475189811 1 0.217144817113876 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBR2 ENSG00000024048 CDS Human protein_coding chr6:42603221 chr6:42603239 synonymous SNV . 0 39 hm5C_associated_SNPs_29131 0 0 1 1 2 UBR2 chr6:42603284 5'GT 42603284 Upstream 46bp
chr1 145584212 145584212 1 + T G LUSC 145584230 + 145584210 145584250 41 GCTCATCAGATGAGGAGGATCTGCCCCCTACCAAGAAGCAC GCGCATCAGATGAGGAGGATCTGCCCCCTACCAAGAAGCAC < 41bp 1 0.162613192327366 1 0.28046515583992 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIAS3 ENSG00000131788 CDS Human protein_coding chr1:145584230 chr1:145584212 nonsynonymous SNV . 0 3 hm5C_associated_SNPs_29132 0 0 0 0 1 PIAS3 chr1:145584129 3'AG 145584129 Downstream 84bp
chr3 52237941 52237941 1 + A C LUSC 52237938 + 52237918 52237958 41 TGAAAACCGATGGAGGGGATCCCAGTGGACTGCTGAAGAAC TGAAAACCGATGGAGGGGATCCCCGTGGACTGCTGAAGAAC < 41bp 1 0.46089156476652 1 0.182299077510834 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52237938 chr3:52237941 nonsynonymous SNV 0.212 1 24 hm5C_associated_SNPs_29133 0 0 1 0 2 ALAS1 chr3:52237879 3'AG 52237879 Downstream 63bp
chr3 52237941 52237941 1 + A C LUSC 52237938 + 52237918 52237958 41 TGAAAACCGATGGAGGGGATCCCAGTGGACTGCTGAAGAAC TGAAAACCGATGGAGGGGATCCCCGTGGACTGCTGAAGAAC < 41bp 1 0.46089156476652 1 0.182299077510834 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52237938 chr3:52237941 nonsynonymous SNV 0.212 1 24 hm5C_associated_SNPs_29133 0 0 1 0 2 ALAS1 chr3:52238028 5'GT 52238028 Upstream 88bp
chr22 26400696 26400696 1 + C T LUSC 26400695 + 26400675 26400715 41 TTATTCTAGGGATAACGTCTCCATCCTCAGCTCCCAGCCAG TTATTCTAGGGATAACGTCTCTATCCTCAGCTCCCAGCCAG < 41bp 1 0.0772982325181402 1 0.200634479522705 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26400695 chr22:26400696 synonymous SNV . 0 22 hm5C_associated_SNPs_29134 0 0 0 0 1 MYO18B chr22:26400684 3'AG 26400684 Downstream 13bp
chr7 91714871 91714871 1 + T C LUSC 91714852 + 91714832 91714872 41 TGAAGGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATA TGAAGGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTACA < 41bp 1 0.231328489078503 1 0.0772009491920471 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714852 chr7:91714871 synonymous SNV . 0 40 hm5C_associated_SNPs_29135 0 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 63bp
chr7 91714871 91714871 1 + T C LUSC 91714856 + 91714836 91714876 41 GGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATAGTGA GGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTACAGTGA < 41bp 1 0.445138311454409 1 0.144807875156403 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714856 chr7:91714871 synonymous SNV . 0 36 hm5C_associated_SNPs_29136 0 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 63bp
chr7 91714871 91714871 1 + T C LUSC 91714864 + 91714844 91714884 41 GGTGCTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGG GGTGCTTTCTCTCACTGAGTCTCCCTACAGTGATGGAGAGG < 41bp 1 0.213748122495288 1 0.484151840209961 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714864 chr7:91714871 synonymous SNV . 0 28 hm5C_associated_SNPs_29137 0 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 63bp
chr7 91714871 91714871 1 + T C LUSC 91714867 + 91714847 91714887 41 GCTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGGACC GCTTTCTCTCACTGAGTCTCCCTACAGTGATGGAGAGGACC < 41bp 1 0.0129181210486356 1 0.0990254878997803 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714867 chr7:91714871 synonymous SNV . 0 25 hm5C_associated_SNPs_29138 0 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 63bp
chr7 91714871 91714871 1 + T C LUSC 91714868 + 91714848 91714888 41 CTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGGACCA CTTTCTCTCACTGAGTCTCCCTACAGTGATGGAGAGGACCA < 41bp 1 0.425741724444403 1 0.448708951473236 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714868 chr7:91714871 synonymous SNV . 0 24 hm5C_associated_SNPs_29139 0 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 63bp
chr7 91714871 91714871 1 + T C LUSC 91714891 + 91714871 91714911 41 TAGTGATGGAGAGGACCATTCTATTCAGCAGGTTTCAGAAC CAGTGATGGAGAGGACCATTCTATTCAGCAGGTTTCAGAAC < 41bp 1 0.196788495071471 1 0.185504943132401 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714891 chr7:91714871 synonymous SNV . 0 1 hm5C_associated_SNPs_29140 0 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 63bp
chr5 82868261 82868261 1 + G T LUSC 82868273 + 82868253 82868293 41 CCCAACCAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTG CCCAACCATCCAGACAGCTTCTTTTCTGCTGGAGAAGACTG < 41bp 1 0.0242641711489863 1 0.0202277600765228 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82868273 chr5:82868261 nonsynonymous SNV 0.999 4 9 hm5C_associated_SNPs_29141 0 0 1 0 1 VCAN chr5:82868235 3'AG 82868235 Downstream 27bp
chr5 82868261 82868261 1 + G T LUSC 82868278 + 82868258 82868298 41 CCAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTGTGTTG CCATCCAGACAGCTTCTTTTCTGCTGGAGAAGACTGTGTTG < 41bp 1 0.518901377154861 1 0.500447809696198 experiment 0.962197245690277 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82868278 chr5:82868261 nonsynonymous SNV 0.999 4 4 hm5C_associated_SNPs_29142 0 0 1 0 1 VCAN chr5:82868235 3'AG 82868235 Downstream 27bp
chr11 71939479 71939479 1 + G C LUSC 71939492 + 71939472 71939512 41 TGTGTGCGCCCTGCTTCTTCCTGTAGAGGGTGAGCGAGAGC TGTGTGCCCCCTGCTTCTTCCTGTAGAGGGTGAGCGAGAGC < 41bp 1 0.569635792332205 1 0.563292324542999 experiment 0.860728415335589 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71939492 chr11:71939479 nonsynonymous SNV 0.922 1 8 hm5C_associated_SNPs_29143 0 0 0 0 2 INPPL1 chr11:71939392 3'AG 71939392 Downstream 88bp
chr11 71939479 71939479 1 + G C LUSC 71939492 + 71939472 71939512 41 TGTGTGCGCCCTGCTTCTTCCTGTAGAGGGTGAGCGAGAGC TGTGTGCCCCCTGCTTCTTCCTGTAGAGGGTGAGCGAGAGC < 41bp 1 0.569635792332205 1 0.563292324542999 experiment 0.860728415335589 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71939492 chr11:71939479 nonsynonymous SNV 0.922 1 8 hm5C_associated_SNPs_29143 0 0 0 0 2 INPPL1 chr11:71939542 5'GT 71939542 Upstream 64bp
chr7 142458433 142458433 1 + A G LUSC 142458413 + 142458393 142458433 41 ATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAA ATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAG < 41bp 1 0.0593556836023751 1 0.155443102121353 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458413 chr7:142458433 nonsynonymous SNV 0.858 2 41 hm5C_associated_SNPs_29146 1 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 28bp
chr7 142458433 142458433 1 + A G LUSC 142458414 + 142458394 142458434 41 TCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAG TCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAGG < 41bp 1 0.02522593772753 1 0.194945633411407 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458414 chr7:142458433 nonsynonymous SNV 0.858 2 40 hm5C_associated_SNPs_29147 1 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 28bp
chr7 142458433 142458433 1 + A G LUSC 142458415 + 142458395 142458435 41 CTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGA CTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAGGA < 41bp 1 0.00356102271771062 1 0.131398469209671 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458415 chr7:142458433 nonsynonymous SNV 0.858 2 39 hm5C_associated_SNPs_29148 1 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 28bp
chr7 142458433 142458433 1 + A G LUSC 142458416 + 142458396 142458436 41 TCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGAT TCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAGGAT < 41bp 1 0.0477024977736165 1 0.131785124540329 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458416 chr7:142458433 nonsynonymous SNV 0.858 2 38 hm5C_associated_SNPs_29149 1 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 28bp
chr7 142458433 142458433 1 + A G LUSC 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATGACAGGATCGTTGGGGGCTACAACTGTGA < 41bp 1 0.185130566021121 1 0.113636314868927 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458433 nonsynonymous SNV 0.858 2 17 hm5C_associated_SNPs_29150 1 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 28bp
chr7 142458433 142458433 1 + A G LUSC 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAGGATCGTTGGGGGCTACAACTGTGAGGAGAATTC < 41bp 1 0.381859490992566 1 0.540628492832184 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458433 nonsynonymous SNV 0.858 2 8 hm5C_associated_SNPs_29151 1 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 28bp
chr7 142458433 142458433 1 + A G LUSC 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAGGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT < 41bp 1 0.187938651235839 1 0.220158666372299 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458433 nonsynonymous SNV 0.858 2 5 hm5C_associated_SNPs_29152 1 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 28bp
chr7 142458433 142458433 1 + A G LUSC 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AGGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC < 41bp 1 0.462922598784712 1 0.317121744155884 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458433 nonsynonymous SNV 0.858 2 2 hm5C_associated_SNPs_29153 1 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 28bp
chr5 90083976 90083976 1 + A G LUSC 90083965 + 90083945 90083985 41 GACATTGCAGACCCAGTGAGCGGGTTGTTCTATTTTGGAGA GACATTGCAGACCCAGTGAGCGGGTTGTTCTGTTTTGGAGA < 41bp 1 0.174480048355509 1 0.810165166854858 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ADGRV1 ENSG00000164199 CDS Human protein_coding chr5:90083965 chr5:90083976 nonsynonymous SNV 0.270 1 32 hm5C_associated_SNPs_29156 0 0 1 0 1 ADGRV1 chr5:90083888 3'AG 90083888 Downstream 89bp
chr18 74625759 74625759 1 + G C LUSC 74625764 + 74625744 74625784 41 TGAAGCAGCATGTGCGGTCGCACACCGGGGAAAAGCCCTAC TGAAGCAGCATGTGCCGTCGCACACCGGGGAAAAGCCCTAC < 41bp 1 0.300731321521018 1 0.0919318795204163 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74625764 chr18:74625759 nonsynonymous SNV 0.865 4 16 hm5C_associated_SNPs_29157 0 0 0 0 2 ZNF236 chr18:74625703 3'AG 74625703 Downstream 57bp
chr18 74625759 74625759 1 + G C LUSC 74625764 + 74625744 74625784 41 TGAAGCAGCATGTGCGGTCGCACACCGGGGAAAAGCCCTAC TGAAGCAGCATGTGCCGTCGCACACCGGGGAAAAGCCCTAC < 41bp 1 0.300731321521018 1 0.0919318795204163 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74625764 chr18:74625759 nonsynonymous SNV 0.865 4 16 hm5C_associated_SNPs_29157 0 0 0 0 2 ZNF236 chr18:74625854 5'GT 74625854 Upstream 96bp
chr17 74261643 74261643 1 + G A LUSC 74261645 + 74261625 74261665 41 GATCAACCAGTTCGTGCTGGCCGCGGGCTGCGCGGCCGACC GATCAACCAGTTCGTGCTAGCCGCGGGCTGCGCGGCCGACC < 41bp 1 0.695456714899242 1 0.242910772562027 experiment 0.609086570201517 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UBALD2 ENSG00000185262 CDS Human protein_coding chr17:74261645 chr17:74261643 synonymous SNV . 0 19 hm5C_associated_SNPs_29158 0 0 1 0 1 UBALD2 chr17:74261706 5'GT 74261706 Upstream 64bp
chr17 74261643 74261643 1 + G A LUSC 74261648 + 74261628 74261668 41 CAACCAGTTCGTGCTGGCCGCGGGCTGCGCGGCCGACCAGG CAACCAGTTCGTGCTAGCCGCGGGCTGCGCGGCCGACCAGG < 41bp 1 0.692419166348094 1 0.857524335384369 experiment 0.615161667303812 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UBALD2 ENSG00000185262 CDS Human protein_coding chr17:74261648 chr17:74261643 synonymous SNV . 0 16 hm5C_associated_SNPs_29159 0 0 1 0 1 UBALD2 chr17:74261706 5'GT 74261706 Upstream 64bp
chr17 74261643 74261643 1 + G A LUSC 74261657 + 74261637 74261677 41 CGTGCTGGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGT CGTGCTAGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGT < 41bp 1 0.638773545062724 1 0.836922526359558 experiment 0.722452909874551 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UBALD2 ENSG00000185262 CDS Human protein_coding chr17:74261657 chr17:74261643 synonymous SNV . 0 7 hm5C_associated_SNPs_29160 0 0 1 0 1 UBALD2 chr17:74261706 5'GT 74261706 Upstream 64bp
chr17 74261643 74261643 1 + G A LUSC 74261660 + 74261640 74261680 41 GCTGGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGTTGC GCTAGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGTTGC < 41bp 1 0.218693873898177 1 0.205718636512756 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UBALD2 ENSG00000185262 CDS Human protein_coding chr17:74261660 chr17:74261643 synonymous SNV . 0 4 hm5C_associated_SNPs_29161 0 0 1 0 1 UBALD2 chr17:74261706 5'GT 74261706 Upstream 64bp
chr17 74261643 74261643 1 + G A LUSC 74261661 + 74261641 74261681 41 CTGGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGTTGCT CTAGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGTTGCT < 41bp 1 0.287565882714413 1 0.0845721960067749 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UBALD2 ENSG00000185262 CDS Human protein_coding chr17:74261661 chr17:74261643 synonymous SNV . 0 3 hm5C_associated_SNPs_29162 0 0 1 0 1 UBALD2 chr17:74261706 5'GT 74261706 Upstream 64bp
chr7 5269298 5269298 1 + C G LUSC 5269313 + 5269293 5269333 41 CTGCCCCTTAGTCACTCAGACATACGGCGCAGCTGCAGGAA CTGCCGCTTAGTCACTCAGACATACGGCGCAGCTGCAGGAA < 41bp 1 0.145456494393877 1 0.0843649804592133 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5269313 chr7:5269298 nonsynonymous SNV 0.909 1 6 hm5C_associated_SNPs_29164 0 0 1 0 3 WIPI2 chr7:5269239 3'AG 5269239 Downstream 60bp
chr7 5269298 5269298 1 + C G LUSC 5269313 + 5269293 5269333 41 CTGCCCCTTAGTCACTCAGACATACGGCGCAGCTGCAGGAA CTGCCGCTTAGTCACTCAGACATACGGCGCAGCTGCAGGAA < 41bp 1 0.145456494393877 1 0.0843649804592133 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5269313 chr7:5269298 nonsynonymous SNV 0.909 1 6 hm5C_associated_SNPs_29164 0 0 1 0 3 WIPI2 chr7:5269336 5'GT 5269336 Upstream 39bp
chr7 5269298 5269298 1 + C G LUSC 5269313 + 5269293 5269333 41 CTGCCCCTTAGTCACTCAGACATACGGCGCAGCTGCAGGAA CTGCCGCTTAGTCACTCAGACATACGGCGCAGCTGCAGGAA < 41bp 1 0.145456494393877 1 0.0843649804592133 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5269313 chr7:5269298 nonsynonymous SNV 0.909 1 6 hm5C_associated_SNPs_29164 0 0 1 0 3 WIPI2 chr7:5269369 5'GT 5269369 Upstream 72bp
chr15 29385282 29385282 1 + A G LUSC 29385286 + 29385266 29385306 41 GCCCTCCTTCAGTTCCAGGGCCCTGCGAACCAGAAGACCTC GCCCTCCTTCAGTTCCGGGGCCCTGCGAACCAGAAGACCTC < 41bp 1 0.0590076374984649 1 0.190315723419189 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APBA2 ENSG00000034053 CDS Human protein_coding chr15:29385286 chr15:29385282 synonymous SNV . 0 17 hm5C_associated_SNPs_29166 0 0 1 0 1 APBA2 chr15:29385278 3'AG 29385278 Downstream 5bp
chr12 105543472 105543472 1 + G T LUSC 105543489 + 105543469 105543509 41 CCAGATTGATTAAAGATATTCGATTTTTCAGGGAAATTAAG CCATATTGATTAAAGATATTCGATTTTTCAGGGAAATTAAG < 41bp 1 0.138393259163242 1 0.0857822895050049 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105543489 chr12:105543472 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_29168 0 0 1 0 2 WASHC4 chr12:105543393 3'AG 105543393 Downstream 80bp
chr12 105543472 105543472 1 + G T LUSC 105543489 + 105543469 105543509 41 CCAGATTGATTAAAGATATTCGATTTTTCAGGGAAATTAAG CCATATTGATTAAAGATATTCGATTTTTCAGGGAAATTAAG < 41bp 1 0.138393259163242 1 0.0857822895050049 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105543489 chr12:105543472 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_29168 0 0 1 0 2 WASHC4 chr12:105543527 5'GT 105543527 Upstream 56bp
chr6 42854064 42854064 1 + G C LUSC 42854083 + 42854063 42854103 41 AGATCTCATGGTTCTTGTGCCCTTTCCACCTCTCAGTGGCC ACATCTCATGGTTCTTGTGCCCTTTCCACCTCTCAGTGGCC < 41bp 1 0.0151276070415883 1 0.0335967540740967 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL7L1 ENSG00000146223 CDS Human protein_coding chr6:42854083 chr6:42854064 nonsynonymous SNV 0.528 1 2 hm5C_associated_SNPs_29169 0 0 1 0 1 RPL7L1 chr6:42853994 3'AG 42853994 Downstream 71bp
chr22 42042990 42042990 1 + C G LUSC 42042976 + 42042956 42042996 41 TCCAGAAGGCTCTCAAGCCTCCTCCAATAAAGCTCTATCGG TCCAGAAGGCTCTCAAGCCTCCTCCAATAAAGCTGTATCGG < 41bp 1 0.0904727715575012 1 0.412894308567047 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42042976 chr22:42042990 synonymous SNV . 0 35 hm5C_associated_SNPs_29171 0 0 1 0 2 XRCC6 chr22:42042900 3'AG 42042900 Downstream 91bp
chr22 42042990 42042990 1 + C G LUSC 42042976 + 42042956 42042996 41 TCCAGAAGGCTCTCAAGCCTCCTCCAATAAAGCTCTATCGG TCCAGAAGGCTCTCAAGCCTCCTCCAATAAAGCTGTATCGG < 41bp 1 0.0904727715575012 1 0.412894308567047 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42042976 chr22:42042990 synonymous SNV . 0 35 hm5C_associated_SNPs_29171 0 0 1 0 2 XRCC6 chr22:42043086 5'GT 42043086 Upstream 97bp
chr18 21098907 21098907 1 + G A LUSC 21098888 + 21098868 21098908 41 ATGTTCTCTTCTTGAGGCATCATTCTCGGACCTCCAACAGC ATGTTCTCTTCTTGAGGCATCATTCTCGGACCTCCAACAAC < 41bp 1 0.0689220197872921 1 0.0541291236877441 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21098888 chr18:21098907 nonsynonymous SNV 0.992 1 40 hm5C_associated_SNPs_29172 0 0 0 0 2 C18orf8 chr18:21098854 3'AG 21098854 Downstream 54bp
chr18 21098907 21098907 1 + G A LUSC 21098888 + 21098868 21098908 41 ATGTTCTCTTCTTGAGGCATCATTCTCGGACCTCCAACAGC ATGTTCTCTTCTTGAGGCATCATTCTCGGACCTCCAACAAC < 41bp 1 0.0689220197872921 1 0.0541291236877441 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21098888 chr18:21098907 nonsynonymous SNV 0.992 1 40 hm5C_associated_SNPs_29172 0 0 0 0 2 C18orf8 chr18:21098943 5'GT 21098943 Upstream 37bp
chr5 140084103 140084103 1 + G A LUSC 140084084 + 140084064 140084104 41 GTGAAGAAACGTTTTGAGGTCAACAAGAAGAAGATGGAAGA GTGAAGAAACGTTTTGAGGTCAACAAGAAGAAGATGGAAAA < 41bp 1 0.698677904817894 1 0.324794948101044 experiment 0.602644190364212 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084084 chr5:140084103 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_29173 0 0 1 0 2 ZMAT2 chr5:140084011 3'AG 140084011 Downstream 93bp
chr5 140084103 140084103 1 + G A LUSC 140084084 + 140084064 140084104 41 GTGAAGAAACGTTTTGAGGTCAACAAGAAGAAGATGGAAGA GTGAAGAAACGTTTTGAGGTCAACAAGAAGAAGATGGAAAA < 41bp 1 0.698677904817894 1 0.324794948101044 experiment 0.602644190364212 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084084 chr5:140084103 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_29173 0 0 1 0 2 ZMAT2 chr5:140084156 5'GT 140084156 Upstream 54bp
chr5 140084103 140084103 1 + G A LUSC 140084087 + 140084067 140084107 41 AAGAAACGTTTTGAGGTCAACAAGAAGAAGATGGAAGAGAA AAGAAACGTTTTGAGGTCAACAAGAAGAAGATGGAAAAGAA < 41bp 1 0.789487732729351 1 0.680905818939209 experiment 0.421024534541299 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084087 chr5:140084103 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_29174 0 0 1 0 2 ZMAT2 chr5:140084011 3'AG 140084011 Downstream 93bp
chr5 140084103 140084103 1 + G A LUSC 140084087 + 140084067 140084107 41 AAGAAACGTTTTGAGGTCAACAAGAAGAAGATGGAAGAGAA AAGAAACGTTTTGAGGTCAACAAGAAGAAGATGGAAAAGAA < 41bp 1 0.789487732729351 1 0.680905818939209 experiment 0.421024534541299 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084087 chr5:140084103 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_29174 0 0 1 0 2 ZMAT2 chr5:140084156 5'GT 140084156 Upstream 54bp
chr5 140084103 140084103 1 + G A LUSC 140084109 + 140084089 140084129 41 AGAAGAAGATGGAAGAGAAGCAGAAGGATTATGATTTTGAG AGAAGAAGATGGAAAAGAAGCAGAAGGATTATGATTTTGAG < 41bp 1 0.779870307369201 1 0.491970002651215 experiment 0.440259385261597 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084109 chr5:140084103 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_29175 0 0 1 0 2 ZMAT2 chr5:140084011 3'AG 140084011 Downstream 93bp
chr5 140084103 140084103 1 + G A LUSC 140084109 + 140084089 140084129 41 AGAAGAAGATGGAAGAGAAGCAGAAGGATTATGATTTTGAG AGAAGAAGATGGAAAAGAAGCAGAAGGATTATGATTTTGAG < 41bp 1 0.779870307369201 1 0.491970002651215 experiment 0.440259385261597 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084109 chr5:140084103 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_29175 0 0 1 0 2 ZMAT2 chr5:140084156 5'GT 140084156 Upstream 54bp
chr19 14568938 14568938 1 + C T LUSC 14568926 + 14568906 14568946 41 GTGGCCCCAATGCCTGGGACCAGAGCTTCACTCTGGAGCTG GTGGCCCCAATGCCTGGGACCAGAGCTTCACTTTGGAGCTG < 41bp 1 0.500648896602042 1 0.412514567375183 experiment 0.998702206795916 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14568926 chr19:14568938 synonymous SNV . 0 33 hm5C_associated_SNPs_29176 0 0 1 0 1 PKN1 chr19:14568843 3'AG 14568843 Downstream 96bp
chr19 14562687 14562687 1 + C T LUSC 14562705 + 14562685 14562725 41 ACCATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGG ACTATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGG < 41bp 1 0.154589273532983 1 0.0795038640499115 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562705 chr19:14562687 synonymous SNV . 0 3 hm5C_associated_SNPs_29184 0 0 1 0 1 PKN1 chr19:14562641 3'AG 14562641 Downstream 47bp
chr19 14562687 14562687 1 + C T LUSC 14562706 + 14562686 14562726 41 CCATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGGG CTATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGGG < 41bp 1 0.049806590642684 1 0.171513915061951 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562706 chr19:14562687 synonymous SNV . 0 2 hm5C_associated_SNPs_29185 0 0 1 0 1 PKN1 chr19:14562641 3'AG 14562641 Downstream 47bp
chr11 71945345 71945345 1 + C G LUSC 71945331 + 71945311 71945351 41 CCCTTTCTCCTCAGGGCTCTCAAAGACTTCAGACCAGGCCT CCCTTTCTCCTCAGGGCTCTCAAAGACTTCAGACGAGGCCT < 41bp 1 0.316164994105713 1 0.804403066635132 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71945331 chr11:71945345 nonsynonymous SNV 0.992 2 35 hm5C_associated_SNPs_29186 0 0 1 0 1 INPPL1 chr11:71945325 3'AG 71945325 Downstream 21bp
chr6 44107280 44107280 1 + C T LUSC 44107298 + 44107278 44107318 41 TGCTGGTGGTTGTGGGCGTCCTCTCCGTAGGCATCGTGCTG TGTTGGTGGTTGTGGGCGTCCTCTCCGTAGGCATCGTGCTG < 41bp 1 0.379014904671203 1 0.179352074861526 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44107298 chr6:44107280 synonymous SNV . 0 3 hm5C_associated_SNPs_29189 0 0 1 0 2 TMEM63B chr6:44107204 3'AG 44107204 Downstream 77bp
chr6 44107280 44107280 1 + C T LUSC 44107298 + 44107278 44107318 41 TGCTGGTGGTTGTGGGCGTCCTCTCCGTAGGCATCGTGCTG TGTTGGTGGTTGTGGGCGTCCTCTCCGTAGGCATCGTGCTG < 41bp 1 0.379014904671203 1 0.179352074861526 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44107298 chr6:44107280 synonymous SNV . 0 3 hm5C_associated_SNPs_29189 0 0 1 0 2 TMEM63B chr6:44107346 5'GT 44107346 Upstream 67bp
chr16 22337554 22337554 1 + A G LUSC 22337560 + 22337540 22337580 41 TCGGACCGCATGCTACAGGACACGGTGCTGGCCGCCGGTTG TCGGACCGCATGCTGCAGGACACGGTGCTGGCCGCCGGTTG < 41bp 1 0.750960184715218 1 0.459197133779526 experiment 0.498079630569563 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22337560 chr16:22337554 synonymous SNV . 0 15 hm5C_associated_SNPs_29191 0 0 1 0 1 POLR3E chr16:22337599 5'GT 22337599 Upstream 46bp
chr18 48446850 48446850 1 + G T LUSC 48446838 + 48446818 48446858 41 GTTTTTAGATATGGCCGGAACACACTCATTCAGTTCGAAGA GTTTTTAGATATGGCCGGAACACACTCATTCATTTCGAAGA < 41bp 1 0.278771238730626 1 0.137660920619965 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ME2 ENSG00000082212 CDS Human protein_coding chr18:48446838 chr18:48446850 nonsynonymous SNV 0.997 4 33 hm5C_associated_SNPs_29192 0 0 1 0 2 ME2 chr18:48446826 3'AG 48446826 Downstream 25bp
chr18 48446850 48446850 1 + G T LUSC 48446838 + 48446818 48446858 41 GTTTTTAGATATGGCCGGAACACACTCATTCAGTTCGAAGA GTTTTTAGATATGGCCGGAACACACTCATTCATTTCGAAGA < 41bp 1 0.278771238730626 1 0.137660920619965 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ME2 ENSG00000082212 CDS Human protein_coding chr18:48446838 chr18:48446850 nonsynonymous SNV 0.997 4 33 hm5C_associated_SNPs_29192 0 0 1 0 2 ME2 chr18:48446935 5'GT 48446935 Upstream 86bp
chr6 29911978 29911978 1 + C A LUSC 29911960 + 29911940 29911980 41 CATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCC CATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTAACC < 41bp 1 0.656069343625878 1 0.384299159049988 experiment 0.687861312748245 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911960 chr6:29911978 stopgain 0.077 0 39 hm5C_associated_SNPs_29193 0 0 0 0 1 HLA-A chr6:29911899 3'AG 29911899 Downstream 80bp
chr1 12027050 12027050 1 + C G LUSC 12027067 + 12027047 12027087 41 TGCCCGGATGTCTATTGGTTCCCCATCTTCACGGAGGTGGC TGCGCGGATGTCTATTGGTTCCCCATCTTCACGGAGGTGGC < 41bp 1 0.483097601163831 1 0.140776306390762 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027067 chr1:12027050 nonsynonymous SNV 0.921 5 4 hm5C_associated_SNPs_29194 0 0 1 0 2 PLOD1 chr1:12027044 3'AG 12027044 Downstream 7bp
chr1 12027050 12027050 1 + C G LUSC 12027067 + 12027047 12027087 41 TGCCCGGATGTCTATTGGTTCCCCATCTTCACGGAGGTGGC TGCGCGGATGTCTATTGGTTCCCCATCTTCACGGAGGTGGC < 41bp 1 0.483097601163831 1 0.140776306390762 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027067 chr1:12027050 nonsynonymous SNV 0.921 5 4 hm5C_associated_SNPs_29194 0 0 1 0 2 PLOD1 chr1:12027148 5'GT 12027148 Upstream 99bp
chr12 53671296 53671296 1 + G T LUSC 53671316 + 53671296 53671336 41 GAGGAATTTGAAGTCAATGACCTGAACTATGAAGATAAACT TAGGAATTTGAAGTCAATGACCTGAACTATGAAGATAAACT < 41bp 1 0.0596419120941883 1 0.0492598116397858 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53671316 chr12:53671296 stopgain 1.000 0 1 hm5C_associated_SNPs_29195 0 0 1 0 1 ESPL1 chr12:53671392 5'GT 53671392 Upstream 97bp
chr22 38084982 38084982 1 + G T LUSC 38084995 + 38084975 38085015 41 GCTGCTCGGGCTGACCCCACCTGAGGTGGGTCCCAGTCTCA GCTGCTCTGGCTGACCCCACCTGAGGTGGGTCCCAGTCTCA < 41bp 1 0.794770352890541 1 0.423887431621552 experiment 0.410459294218917 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOL12 ENSG00000100101 CDS Human protein_coding chr22:38084995 chr22:38084982 nonsynonymous SNV 0.023 5 8 hm5C_associated_SNPs_29196 0 0 1 0 1 NOL12 chr22:38084999 5'GT 38084999 Upstream 18bp
chr15 75644693 75644693 1 + C T LUSC 75644692 + 75644672 75644712 41 ATCCCCCCCTTTGAGAAGGCCCGCTCGGTCCTGGAGGCCCT ATCCCCCCCTTTGAGAAGGCCTGCTCGGTCCTGGAGGCCCT < 41bp 1 0.330703421328679 1 0.058122307062149 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NEIL1 ENSG00000140398 CDS Human protein_coding chr15:75644692 chr15:75644693 nonsynonymous SNV 0.472 4 22 hm5C_associated_SNPs_29197 0 0 1 0 2 NEIL1 chr15:75644665 3'AG 75644665 Downstream 29bp
chr15 75644693 75644693 1 + C T LUSC 75644692 + 75644672 75644712 41 ATCCCCCCCTTTGAGAAGGCCCGCTCGGTCCTGGAGGCCCT ATCCCCCCCTTTGAGAAGGCCTGCTCGGTCCTGGAGGCCCT < 41bp 1 0.330703421328679 1 0.058122307062149 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NEIL1 ENSG00000140398 CDS Human protein_coding chr15:75644692 chr15:75644693 nonsynonymous SNV 0.472 4 22 hm5C_associated_SNPs_29197 0 0 1 0 2 NEIL1 chr15:75644728 5'GT 75644728 Upstream 36bp
chr15 41862286 41862286 1 + G A LUSC 41862285 + 41862265 41862305 41 TGTGGTCCTTGGTGTGCTAACGGCCCTGGTGACGGCTGCTG TGTGGTCCTTGGTGTGCTAACAGCCCTGGTGACGGCTGCTG < 41bp 1 0.66552266373729 1 0.241768836975098 experiment 0.668954672525421 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41862285 chr15:41862286 synonymous SNV . 0 22 hm5C_associated_SNPs_29198 0 0 1 0 2 TYRO3 chr15:41862225 3'AG 41862225 Downstream 62bp
chr15 41862286 41862286 1 + G A LUSC 41862285 + 41862265 41862305 41 TGTGGTCCTTGGTGTGCTAACGGCCCTGGTGACGGCTGCTG TGTGGTCCTTGGTGTGCTAACAGCCCTGGTGACGGCTGCTG < 41bp 1 0.66552266373729 1 0.241768836975098 experiment 0.668954672525421 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41862285 chr15:41862286 synonymous SNV . 0 22 hm5C_associated_SNPs_29198 0 0 1 0 2 TYRO3 chr15:41862354 5'GT 41862354 Upstream 69bp
chr1 40954798 40954798 1 + C G LUSC 40954785 + 40954765 40954805 41 GTTGACTTTCAAGGACATATCTATTGACTTCACCCAGGAAG GTTGACTTTCAAGGACATATCTATTGACTTCACGCAGGAAG < 41bp 1 0.411711839651884 1 0.100783675909042 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP69 ENSG00000187815 CDS Human protein_coding chr1:40954785 chr1:40954798 synonymous SNV . 0 34 hm5C_associated_SNPs_29199 0 0 1 0 2 ZFP69 chr1:40954760 3'AG 40954760 Downstream 39bp
chr1 40954798 40954798 1 + C G LUSC 40954785 + 40954765 40954805 41 GTTGACTTTCAAGGACATATCTATTGACTTCACCCAGGAAG GTTGACTTTCAAGGACATATCTATTGACTTCACGCAGGAAG < 41bp 1 0.411711839651884 1 0.100783675909042 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP69 ENSG00000187815 CDS Human protein_coding chr1:40954785 chr1:40954798 synonymous SNV . 0 34 hm5C_associated_SNPs_29199 0 0 1 0 2 ZFP69 chr1:40954886 5'GT 40954886 Upstream 89bp
chr12 31255394 31255394 1 + G T LUSC 31255405 + 31255385 31255425 41 GTGACAGGGGCCCTGCTCCTCTCTGTGGTTGGAGGAAAGAT GTGACAGGGTCCCTGCTCCTCTCTGTGGTTGGAGGAAAGAT < 41bp 1 0.465808864531225 1 0.478331804275513 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31255405 chr12:31255394 nonsynonymous SNV 0.814 4 10 hm5C_associated_SNPs_29200 0 0 1 0 1 DDX11 chr12:31255461 5'GT 31255461 Upstream 68bp
chr21 48068521 48068521 1 + G T LUSC 48068501 + 48068481 48068521 41 GGGACTGGGATCATCAGTCTCTTCTGTGCACACTATGCGCG GGGACTGGGATCATCAGTCTCTTCTGTGCACACTATGCGCT < 41bp 1 0.449608803643748 1 0.144956648349762 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48068501 chr21:48068521 nonsynonymous SNV 0.002 1 41 hm5C_associated_SNPs_29201 0 0 1 0 1 PRMT2 chr21:48068531 5'GT 48068531 Upstream 11bp
chr21 48068521 48068521 1 + G T LUSC 48068504 + 48068484 48068524 41 ACTGGGATCATCAGTCTCTTCTGTGCACACTATGCGCGGCC ACTGGGATCATCAGTCTCTTCTGTGCACACTATGCGCTGCC < 41bp 1 0.706838821708775 1 0.645380735397339 experiment 0.586322356582451 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48068504 chr21:48068521 nonsynonymous SNV 0.002 1 38 hm5C_associated_SNPs_29202 0 0 1 0 1 PRMT2 chr21:48068531 5'GT 48068531 Upstream 11bp
chr5 6652021 6652021 1 + G A LUSC 6652008 + 6651988 6652028 41 AAAGCCTATGCCACTGTTGGCGTGTACAATGGCGATTATGT AAAGCCTATGCCACTGTTGGCGTGTACAATGGCAATTATGT < 41bp 1 0.122938938692357 1 0.250874012708664 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6652008 chr5:6652021 synonymous SNV . 0 34 hm5C_associated_SNPs_29203 0 0 1 0 1 SRD5A1 chr5:6651955 3'AG 6651955 Downstream 67bp
chr17 37357551 37357551 1 + G A LUSC 37357571 + 37357551 37357591 41 GAAATCGCCAATGCCAACTCCCGTGAGTACCTGGGATCTGT AAAATCGCCAATGCCAACTCCCGTGAGTACCTGGGATCTGT < 41bp 1 0.132287121738123 1 0.0717098712921143 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37357571 chr17:37357551 nonsynonymous SNV 0.997 2 1 hm5C_associated_SNPs_29210 0 0 1 0 2 RPL19 chr17:37357466 3'AG 37357466 Downstream 86bp
chr17 37357551 37357551 1 + G A LUSC 37357571 + 37357551 37357591 41 GAAATCGCCAATGCCAACTCCCGTGAGTACCTGGGATCTGT AAAATCGCCAATGCCAACTCCCGTGAGTACCTGGGATCTGT < 41bp 1 0.132287121738123 1 0.0717098712921143 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37357571 chr17:37357551 nonsynonymous SNV 0.997 2 1 hm5C_associated_SNPs_29210 0 0 1 0 2 RPL19 chr17:37357572 5'GT 37357572 Upstream 22bp
chr4 8294078 8294078 1 + C A LUSC 8294067 + 8294047 8294087 41 GTACGGGAACTCCGGGGGACCACTGGTGAACCTGGTAAGTG GTACGGGAACTCCGGGGGACCACTGGTGAACATGGTAAGTG < 41bp 1 0.389846454379258 1 0.389927953481674 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8294067 chr4:8294078 nonsynonymous SNV 0.999 4 32 hm5C_associated_SNPs_29212 0 0 0 0 2 HTRA3 chr4:8294048 3'AG 8294048 Downstream 31bp
chr4 8294078 8294078 1 + C A LUSC 8294067 + 8294047 8294087 41 GTACGGGAACTCCGGGGGACCACTGGTGAACCTGGTAAGTG GTACGGGAACTCCGGGGGACCACTGGTGAACATGGTAAGTG < 41bp 1 0.389846454379258 1 0.389927953481674 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8294067 chr4:8294078 nonsynonymous SNV 0.999 4 32 hm5C_associated_SNPs_29212 0 0 0 0 2 HTRA3 chr4:8294080 5'GT 8294080 Upstream 3bp
chr15 89849348 89849348 1 + C T LUSC 89849336 + 89849316 89849356 41 CATTTTTCCACGAGCTGGTGCAGACAGCTCTGCCATCAGGC CATTTTTCCACGAGCTGGTGCAGACAGCTCTGTCATCAGGC < 41bp 1 0.11748991513463 1 0.330495297908783 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FANCI ENSG00000140525 CDS Human protein_coding chr15:89849336 chr15:89849348 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_29213 0 0 1 0 1 FANCI chr15:89849425 5'GT 89849425 Upstream 78bp
chr3 100059954 100059954 1 + C T LUSC 100059974 + 100059954 100059994 41 CACCTGTGCTGTGTTTGGGCCTGATGGAACTTTACTAGCAA TACCTGTGCTGTGTTTGGGCCTGATGGAACTTTACTAGCAA < 41bp 1 0.39551999143235 1 0.141973227262497 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NIT2 ENSG00000114021 CDS Human protein_coding chr3:100059974 chr3:100059954 synonymous SNV . 0 1 hm5C_associated_SNPs_29215 0 0 1 0 2 NIT2 chr3:100059917 3'AG 100059917 Downstream 38bp
chr3 100059954 100059954 1 + C T LUSC 100059974 + 100059954 100059994 41 CACCTGTGCTGTGTTTGGGCCTGATGGAACTTTACTAGCAA TACCTGTGCTGTGTTTGGGCCTGATGGAACTTTACTAGCAA < 41bp 1 0.39551999143235 1 0.141973227262497 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NIT2 ENSG00000114021 CDS Human protein_coding chr3:100059974 chr3:100059954 synonymous SNV . 0 1 hm5C_associated_SNPs_29215 0 0 1 0 2 NIT2 chr3:100060005 5'GT 100060005 Upstream 52bp
chr14 64484359 64484359 1 + T C LUSC 64484376 + 64484356 64484396 41 CTCTAGCTTTGTGGGACAAACTTTTTAACTTAAAAAATGTC CTCCAGCTTTGTGGGACAAACTTTTTAACTTAAAAAATGTC < 41bp 1 0.0445768600814954 1 0.105151683092117 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64484376 chr14:64484359 nonsynonymous SNV 0.994 3 4 hm5C_associated_SNPs_29216 0 0 1 0 1 SYNE2 chr14:64484313 3'AG 64484313 Downstream 47bp
chr19 14024308 14024308 1 + C T LUSC 14024290 + 14024270 14024310 41 GGACATCCCGCCGCCAGTGGCCATAGGAAAAGGCCCGGCGT GGACATCCCGCCGCCAGTGGCCATAGGAAAAGGCCCGGTGT < 41bp 1 0.238800559790535 1 0.30458390712738 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14024290 chr19:14024308 nonsynonymous SNV 0.002 0 39 hm5C_associated_SNPs_29217 0 0 0 0 1 CC2D1A chr19:14024217 3'AG 14024217 Downstream 92bp
chr6 30877261 30877261 1 + G C LUSC 30877252 + 30877232 30877272 41 AGAACTGGGTGATGCGGATGCTCTTTCTGGAGCAGCCTTTG AGAACTGGGTGATGCGGATGCTCTTTCTGCAGCAGCCTTTG < 41bp 1 0.374281951087328 1 0.04526686668396 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2H4 ENSG00000213780 CDS Human protein_coding chr6:30877252 chr6:30877261 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_29219 0 0 0 0 2 GTF2H4 chr6:30877212 3'AG 30877212 Downstream 50bp
chr6 30877261 30877261 1 + G C LUSC 30877252 + 30877232 30877272 41 AGAACTGGGTGATGCGGATGCTCTTTCTGGAGCAGCCTTTG AGAACTGGGTGATGCGGATGCTCTTTCTGCAGCAGCCTTTG < 41bp 1 0.374281951087328 1 0.04526686668396 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2H4 ENSG00000213780 CDS Human protein_coding chr6:30877252 chr6:30877261 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_29219 0 0 0 0 2 GTF2H4 chr6:30877316 5'GT 30877316 Upstream 56bp
chr12 7080158 7080158 1 + T G LUSC 7080174 + 7080154 7080194 41 ATGCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAAC ATGCGCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAAC < 41bp 1 0.232338758676347 1 0.0521124303340912 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080174 chr12:7080158 synonymous SNV . 0 5 hm5C_associated_SNPs_29220 0 0 1 1 1 EMG1 chr12:7080253 5'GT 7080253 Upstream 96bp
chr12 7080158 7080158 1 + T G LUSC 7080176 + 7080156 7080196 41 GCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAA GCGCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAA < 41bp 1 0.158601003785642 1 0.0466203689575195 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080176 chr12:7080158 synonymous SNV . 0 3 hm5C_associated_SNPs_29221 0 0 1 1 1 EMG1 chr12:7080253 5'GT 7080253 Upstream 96bp
chr12 7080158 7080158 1 + T G LUSC 7080177 + 7080157 7080197 41 CTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAAG CGCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAAG < 41bp 1 0.378850675470651 1 0.102057635784149 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080177 chr12:7080158 synonymous SNV . 0 2 hm5C_associated_SNPs_29222 0 0 1 1 1 EMG1 chr12:7080253 5'GT 7080253 Upstream 96bp
chr17 48148801 48148801 1 + G A LUSC 48148790 + 48148770 48148810 41 TTGCTGAGCCAGGAGGCAGGCGGAGACCTGCGGAGGAGGCA TTGCTGAGCCAGGAGGCAGGCGGAGACCTGCAGAGGAGGCA < 41bp 1 0.504890871821516 1 0.846988081932068 experiment 0.990218256356968 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48148790 chr17:48148801 nonsynonymous SNV 0.989 0 32 hm5C_associated_SNPs_29223 0 0 0 0 1 ITGA3 chr17:48148882 5'GT 48148882 Upstream 82bp
chr12 7080195 7080195 1 + A G LUSC 7080176 + 7080156 7080196 41 GCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAA GCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACGA < 41bp 1 0.171397788919208 1 0.056992381811142 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080176 chr12:7080195 nonsynonymous SNV 0.996 0 40 hm5C_associated_SNPs_29224 0 0 1 0 1 EMG1 chr12:7080253 5'GT 7080253 Upstream 59bp
chr12 7080195 7080195 1 + A G LUSC 7080177 + 7080157 7080197 41 CTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAAG CTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACGAG < 41bp 1 0.403484394719327 1 0.128461629152298 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080177 chr12:7080195 nonsynonymous SNV 0.996 0 39 hm5C_associated_SNPs_29225 0 0 1 0 1 EMG1 chr12:7080253 5'GT 7080253 Upstream 59bp
chrX 41089015 41089015 1 + G T LUSC 41089020 + 41089000 41089040 41 CTTGCAAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAA CTTGCAAAAGCTTGTTAACTCTGTCCAGAGGAGGTAAAAAA < 41bp 1 0.0978664387973239 1 0.290596961975098 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089020 chrX:41089015 stopgain 1.000 1 16 hm5C_associated_SNPs_29227 0 0 1 0 2 USP9X chrX:41089032 5'GT 41089032 Upstream 18bp
chrX 41089015 41089015 1 + G T LUSC 41089020 + 41089000 41089040 41 CTTGCAAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAA CTTGCAAAAGCTTGTTAACTCTGTCCAGAGGAGGTAAAAAA < 41bp 1 0.0978664387973239 1 0.290596961975098 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089020 chrX:41089015 stopgain 1.000 1 16 hm5C_associated_SNPs_29227 0 0 1 0 2 USP9X chrX:41089080 5'GT 41089080 Upstream 66bp
chrX 41089015 41089015 1 + G T LUSC 41089025 + 41089005 41089045 41 AAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAAAGCCA AAAAGCTTGTTAACTCTGTCCAGAGGAGGTAAAAAAAGCCA < 41bp 1 0.19821071422794 1 0.771965086460114 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089025 chrX:41089015 stopgain 1.000 1 11 hm5C_associated_SNPs_29228 0 0 1 0 2 USP9X chrX:41089032 5'GT 41089032 Upstream 18bp
chrX 41089015 41089015 1 + G T LUSC 41089025 + 41089005 41089045 41 AAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAAAGCCA AAAAGCTTGTTAACTCTGTCCAGAGGAGGTAAAAAAAGCCA < 41bp 1 0.19821071422794 1 0.771965086460114 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089025 chrX:41089015 stopgain 1.000 1 11 hm5C_associated_SNPs_29228 0 0 1 0 2 USP9X chrX:41089080 5'GT 41089080 Upstream 66bp
chr5 34936297 34936297 1 + G C LUSC 34936300 + 34936280 34936320 41 AAATGATTGCCAAGGAAGAACTAGAATCTGTGTTAGAGGAA AAATGATTGCCAAGGAACAACTAGAATCTGTGTTAGAGGAA < 41bp 1 0.743414940695512 1 0.473103225231171 experiment 0.513170118608976 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34936300 chr5:34936297 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_29232 0 0 1 0 1 DNAJC21 chr5:34936371 5'GT 34936371 Upstream 75bp
chr7 116829385 116829385 1 + A G LUSC 116829387 + 116829367 116829407 41 TCCAACAGATATAAGCTTACCAAAGTCAGCAACAATATGCT TCCAACAGATATAAGCTTGCCAAAGTCAGCAACAATATGCT < 41bp 1 0.216324468636017 1 0.678213834762573 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ST7 ENSG00000004866 CDS Human protein_coding chr7:116829387 chr7:116829385 synonymous SNV . 0 19 hm5C_associated_SNPs_29233 0 0 1 1 2 ST7 chr7:116829375 3'AG 116829375 Downstream 11bp
chr7 116829385 116829385 1 + A G LUSC 116829387 + 116829367 116829407 41 TCCAACAGATATAAGCTTACCAAAGTCAGCAACAATATGCT TCCAACAGATATAAGCTTGCCAAAGTCAGCAACAATATGCT < 41bp 1 0.216324468636017 1 0.678213834762573 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ST7 ENSG00000004866 CDS Human protein_coding chr7:116829387 chr7:116829385 synonymous SNV . 0 19 hm5C_associated_SNPs_29233 0 0 1 1 2 ST7 chr7:116829447 5'GT 116829447 Upstream 63bp
chr17 73058246 73058246 1 + G A LUSC 73058257 + 73058237 73058277 41 ATAACTACGGCAATGAGGATCAGGCAGAATTCCTCTGTGTT ATAACTACGACAATGAGGATCAGGCAGAATTCCTCTGTGTT < 41bp 1 0.182924657579455 1 0.454549312591553 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD2 ENSG00000180901 CDS Human protein_coding chr17:73058257 chr17:73058246 nonsynonymous SNV 0.999 4 10 hm5C_associated_SNPs_29234 0 0 1 0 2 KCTD2 chr17:73058215 3'AG 73058215 Downstream 32bp
chr17 73058246 73058246 1 + G A LUSC 73058257 + 73058237 73058277 41 ATAACTACGGCAATGAGGATCAGGCAGAATTCCTCTGTGTT ATAACTACGACAATGAGGATCAGGCAGAATTCCTCTGTGTT < 41bp 1 0.182924657579455 1 0.454549312591553 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD2 ENSG00000180901 CDS Human protein_coding chr17:73058257 chr17:73058246 nonsynonymous SNV 0.999 4 10 hm5C_associated_SNPs_29234 0 0 1 0 2 KCTD2 chr17:73058340 5'GT 73058340 Upstream 95bp
chrX 18606133 18606133 1 + G T LUSC 18606141 + 18606121 18606161 41 TTGGGGAGCTTAGCGATGGACAGCCTTTATTTCCTGGAGAA TTGGGGAGCTTATCGATGGACAGCCTTTATTTCCTGGAGAA < 41bp 1 0.368425933925807 1 0.352780163288116 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18606141 chrX:18606133 nonsynonymous SNV 0.999 3 13 hm5C_associated_SNPs_29235 0 0 0 0 1 CDKL5 chrX:18606074 3'AG 18606074 Downstream 60bp
chr15 81199023 81199023 1 + C T LUSC 81199009 + 81198989 81199029 41 CCCTTTCTGCCCTAGGGAAACCAATGTACCTGCACATCGGG CCCTTTCTGCCCTAGGGAAACCAATGTACCTGCATATCGGG < 41bp 1 0.097922767757556 1 0.061531662940979 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81199009 chr15:81199023 synonymous SNV . 0 35 hm5C_associated_SNPs_29236 0 0 0 0 1 CEMIP chr15:81199004 3'AG 81199004 Downstream 20bp
chr11 66610673 66610673 1 + T C LUSC 66610663 + 66610643 66610683 41 GTGCTGTGGCTGCAGGAGGTCTCCAACCTGTCAGAGTGGCT GTGCTGTGGCTGCAGGAGGTCTCCAACCTGCCAGAGTGGCT < 41bp 1 0.690492879432926 1 0.911532461643219 experiment 0.619014241134147 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout C11orf80 ENSG00000173715 CDS Human protein_coding chr11:66610663 chr11:66610673 nonsynonymous SNV 0.986 3 31 hm5C_associated_SNPs_29237 0 0 1 0 1 C11orf80 chr11:66610640 3'AG 66610640 Downstream 34bp
chr15 42052717 42052717 1 + T A LUSC 42052715 + 42052695 42052735 41 TCCAAGGTTTCCAAAAGTCTCATTCTTACTCGAGTAAGTGT TCCAAGGTTTCCAAAAGTCTCAATCTTACTCGAGTAAGTGT < 41bp 1 0.0457718085986026 1 0.0687389969825745 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGA ENSG00000174197 CDS Human protein_coding chr15:42052715 chr15:42052717 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_29239 0 0 1 0 1 MGA chr15:42052727 5'GT 42052727 Upstream 11bp
chr20 25187723 25187723 1 + C T LUSC 25187712 + 25187692 25187732 41 CTCTCCCCCCTTCCCACCAGCAGCCGCAGCACGGTCCTTGG CTCTCCCCCCTTCCCACCAGCAGCCGCAGCATGGTCCTTGG < 41bp 1 0.386289205818406 1 0.370169401168823 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25187712 chr20:25187723 synonymous SNV . 0 32 hm5C_associated_SNPs_29240 0 0 1 0 2 ENTPD6 chr20:25187712 3'AG 25187712 Downstream 12bp
chr20 25187723 25187723 1 + C T LUSC 25187712 + 25187692 25187732 41 CTCTCCCCCCTTCCCACCAGCAGCCGCAGCACGGTCCTTGG CTCTCCCCCCTTCCCACCAGCAGCCGCAGCATGGTCCTTGG < 41bp 1 0.386289205818406 1 0.370169401168823 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25187712 chr20:25187723 synonymous SNV . 0 32 hm5C_associated_SNPs_29240 0 0 1 0 2 ENTPD6 chr20:25187715 3'AG 25187715 Downstream 9bp
chr1 28159279 28159279 1 + C T LUSC 28159277 + 28159257 28159297 41 TATTTTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTG TATTTTTCAGGGCAGGTAAGCCTCCTCCCGGTTTACATCTG < 41bp 1 0.0850945927081933 1 0.470963329076767 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159277 chr1:28159279 synonymous SNV . 0 23 hm5C_associated_SNPs_29241 0 0 1 0 2 PPP1R8 chr1:28159267 3'AG 28159267 Downstream 13bp
chr1 28159279 28159279 1 + C T LUSC 28159277 + 28159257 28159297 41 TATTTTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTG TATTTTTCAGGGCAGGTAAGCCTCCTCCCGGTTTACATCTG < 41bp 1 0.0850945927081933 1 0.470963329076767 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159277 chr1:28159279 synonymous SNV . 0 23 hm5C_associated_SNPs_29241 0 0 1 0 2 PPP1R8 chr1:28159327 5'GT 28159327 Upstream 49bp
chr1 28159279 28159279 1 + C T LUSC 28159278 + 28159258 28159298 41 ATTTTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGG ATTTTTCAGGGCAGGTAAGCCTCCTCCCGGTTTACATCTGG < 41bp 1 0.3893491503865 1 0.831571340560913 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159278 chr1:28159279 synonymous SNV . 0 22 hm5C_associated_SNPs_29242 0 0 1 0 2 PPP1R8 chr1:28159267 3'AG 28159267 Downstream 13bp
chr1 28159279 28159279 1 + C T LUSC 28159278 + 28159258 28159298 41 ATTTTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGG ATTTTTCAGGGCAGGTAAGCCTCCTCCCGGTTTACATCTGG < 41bp 1 0.3893491503865 1 0.831571340560913 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159278 chr1:28159279 synonymous SNV . 0 22 hm5C_associated_SNPs_29242 0 0 1 0 2 PPP1R8 chr1:28159327 5'GT 28159327 Upstream 49bp
chr1 28159279 28159279 1 + C T LUSC 28159280 + 28159260 28159300 41 TTTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGAT TTTTCAGGGCAGGTAAGCCTCCTCCCGGTTTACATCTGGAT < 41bp 1 0.0814713011046863 1 0.0487513840198517 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159280 chr1:28159279 synonymous SNV . 0 20 hm5C_associated_SNPs_29243 0 0 1 0 2 PPP1R8 chr1:28159267 3'AG 28159267 Downstream 13bp
chr1 28159279 28159279 1 + C T LUSC 28159280 + 28159260 28159300 41 TTTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGAT TTTTCAGGGCAGGTAAGCCTCCTCCCGGTTTACATCTGGAT < 41bp 1 0.0814713011046863 1 0.0487513840198517 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159280 chr1:28159279 synonymous SNV . 0 20 hm5C_associated_SNPs_29243 0 0 1 0 2 PPP1R8 chr1:28159327 5'GT 28159327 Upstream 49bp
chr1 28159279 28159279 1 + C T LUSC 28159281 + 28159261 28159301 41 TTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATG TTTCAGGGCAGGTAAGCCTCCTCCCGGTTTACATCTGGATG < 41bp 1 0.302490782505801 1 0.0551595389842987 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159281 chr1:28159279 synonymous SNV . 0 19 hm5C_associated_SNPs_29244 0 0 1 0 2 PPP1R8 chr1:28159267 3'AG 28159267 Downstream 13bp
chr1 28159279 28159279 1 + C T LUSC 28159281 + 28159261 28159301 41 TTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATG TTTCAGGGCAGGTAAGCCTCCTCCCGGTTTACATCTGGATG < 41bp 1 0.302490782505801 1 0.0551595389842987 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159281 chr1:28159279 synonymous SNV . 0 19 hm5C_associated_SNPs_29244 0 0 1 0 2 PPP1R8 chr1:28159327 5'GT 28159327 Upstream 49bp
chr1 28159279 28159279 1 + C T LUSC 28159283 + 28159263 28159303 41 TCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATGTA TCAGGGCAGGTAAGCCTCCTCCCGGTTTACATCTGGATGTA < 41bp 1 0.640271147572068 1 0.345185458660126 experiment 0.719457704855864 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159283 chr1:28159279 synonymous SNV . 0 17 hm5C_associated_SNPs_29245 0 0 1 0 2 PPP1R8 chr1:28159267 3'AG 28159267 Downstream 13bp
chr1 28159279 28159279 1 + C T LUSC 28159283 + 28159263 28159303 41 TCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATGTA TCAGGGCAGGTAAGCCTCCTCCCGGTTTACATCTGGATGTA < 41bp 1 0.640271147572068 1 0.345185458660126 experiment 0.719457704855864 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159283 chr1:28159279 synonymous SNV . 0 17 hm5C_associated_SNPs_29245 0 0 1 0 2 PPP1R8 chr1:28159327 5'GT 28159327 Upstream 49bp
chr1 28159279 28159279 1 + C T LUSC 28159284 + 28159264 28159304 41 CAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATGTAG CAGGGCAGGTAAGCCTCCTCCCGGTTTACATCTGGATGTAG < 41bp 1 0.392359622875141 1 0.212592899799347 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159284 chr1:28159279 synonymous SNV . 0 16 hm5C_associated_SNPs_29246 0 0 1 0 2 PPP1R8 chr1:28159267 3'AG 28159267 Downstream 13bp
chr1 28159279 28159279 1 + C T LUSC 28159284 + 28159264 28159304 41 CAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATGTAG CAGGGCAGGTAAGCCTCCTCCCGGTTTACATCTGGATGTAG < 41bp 1 0.392359622875141 1 0.212592899799347 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159284 chr1:28159279 synonymous SNV . 0 16 hm5C_associated_SNPs_29246 0 0 1 0 2 PPP1R8 chr1:28159327 5'GT 28159327 Upstream 49bp
chr1 28159279 28159279 1 + C T LUSC 28159285 + 28159265 28159305 41 AGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATGTAGT AGGGCAGGTAAGCCTCCTCCCGGTTTACATCTGGATGTAGT < 41bp 1 0.285262067303991 1 0.426471889019012 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159285 chr1:28159279 synonymous SNV . 0 15 hm5C_associated_SNPs_29247 0 0 1 0 2 PPP1R8 chr1:28159267 3'AG 28159267 Downstream 13bp
chr1 28159279 28159279 1 + C T LUSC 28159285 + 28159265 28159305 41 AGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATGTAGT AGGGCAGGTAAGCCTCCTCCCGGTTTACATCTGGATGTAGT < 41bp 1 0.285262067303991 1 0.426471889019012 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159285 chr1:28159279 synonymous SNV . 0 15 hm5C_associated_SNPs_29247 0 0 1 0 2 PPP1R8 chr1:28159327 5'GT 28159327 Upstream 49bp
chr11 45948283 45948283 1 + C T LUSC 45948298 + 45948278 45948318 41 CACAACTGGACGAGGAAGACCCCTGCTTTGAGTTCCGGCAG CACAATTGGACGAGGAAGACCCCTGCTTTGAGTTCCGGCAG < 41bp 1 0.245125737029628 1 0.633621037006378 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45948298 chr11:45948283 synonymous SNV . 0 6 hm5C_associated_SNPs_29248 0 0 1 0 1 LARGE2 chr11:45948262 3'AG 45948262 Downstream 22bp
chr3 58092592 58092592 1 + C T LUSC 58092593 + 58092573 58092613 41 AGCCACGGGAGGCTACAACCCTGATCTGGTGAATCAGCTGC AGCCACGGGAGGCTACAACTCTGATCTGGTGAATCAGCTGC < 41bp 1 0.450106198651117 1 0.325373470783234 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58092593 chr3:58092592 nonsynonymous SNV 0.998 1 20 hm5C_associated_SNPs_29249 0 0 1 0 1 FLNB chr3:58092600 5'GT 58092600 Upstream 9bp
chr3 58092592 58092592 1 + C T LUSC 58092598 + 58092578 58092618 41 CGGGAGGCTACAACCCTGATCTGGTGAATCAGCTGCTGTGC CGGGAGGCTACAACTCTGATCTGGTGAATCAGCTGCTGTGC < 41bp 1 0.509365081123178 1 0.152396887540817 experiment 0.981269837753645 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58092598 chr3:58092592 nonsynonymous SNV 0.998 1 15 hm5C_associated_SNPs_29250 0 0 1 0 1 FLNB chr3:58092600 5'GT 58092600 Upstream 9bp
chr22 24583361 24583361 1 + G A LUSC 24583360 + 24583340 24583380 41 GACGACTTCACCCTGCACAGCGGGCGCGTCCTGCCCCCAGG GACGACTTCACCCTGCACAGCAGGCGCGTCCTGCCCCCAGG < 41bp 1 0.571822660402049 1 0.613803803920746 experiment 0.856354679195903 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24583360 chr22:24583361 nonsynonymous SNV 0.010 4 22 hm5C_associated_SNPs_29251 0 0 0 0 1 SUSD2 chr22:24583418 5'GT 24583418 Upstream 58bp
chr20 3781952 3781952 1 + C T LUSC 3781963 + 3781943 3781983 41 CCCCTGGCCCTAGGTCGCTTCTCTCTGACCCCTGCAGAGGG CCCCTGGCCTTAGGTCGCTTCTCTCTGACCCCTGCAGAGGG < 41bp 1 0.182124967692387 1 0.589261174201965 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC25B ENSG00000101224 CDS Human protein_coding chr20:3781963 chr20:3781952 synonymous SNV . 0 10 hm5C_associated_SNPs_29252 0 0 1 0 1 CDC25B chr20:3782035 5'GT 3782035 Upstream 84bp
chr1 183091288 183091288 1 + C T LUSC 183091283 + 183091263 183091303 41 GGAGATTCAACTGCAGGCACCTCCTCCGATTGCCAACCCTG GGAGATTCAACTGCAGGCACCTCCTTCGATTGCCAACCCTG < 41bp 1 0.154019909000203 1 0.107446640729904 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183091283 chr1:183091288 nonsynonymous SNV 0.940 0 26 hm5C_associated_SNPs_29256 0 0 1 0 2 LAMC1 chr1:183091198 3'AG 183091198 Downstream 91bp
chr1 183091288 183091288 1 + C T LUSC 183091283 + 183091263 183091303 41 GGAGATTCAACTGCAGGCACCTCCTCCGATTGCCAACCCTG GGAGATTCAACTGCAGGCACCTCCTTCGATTGCCAACCCTG < 41bp 1 0.154019909000203 1 0.107446640729904 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183091283 chr1:183091288 nonsynonymous SNV 0.940 0 26 hm5C_associated_SNPs_29256 0 0 1 0 2 LAMC1 chr1:183091386 5'GT 183091386 Upstream 99bp
chr16 29851519 29851519 1 + C T LUSC 29851532 + 29851512 29851552 41 TTTTCCTCCAGCCAGGAGAGCAGCTGGAACAAGGCATCCAG TTTTCCTTCAGCCAGGAGAGCAGCTGGAACAAGGCATCCAG < 41bp 1 0.472261958045977 1 0.438630402088165 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29851532 chr16:29851519 nonsynonymous SNV . 0 8 hm5C_associated_SNPs_29257 0 0 1 1 2 MVP chr16:29851499 3'AG 29851499 Downstream 21bp
chr16 29851519 29851519 1 + C T LUSC 29851532 + 29851512 29851552 41 TTTTCCTCCAGCCAGGAGAGCAGCTGGAACAAGGCATCCAG TTTTCCTTCAGCCAGGAGAGCAGCTGGAACAAGGCATCCAG < 41bp 1 0.472261958045977 1 0.438630402088165 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29851532 chr16:29851519 nonsynonymous SNV . 0 8 hm5C_associated_SNPs_29257 0 0 1 1 2 MVP chr16:29851508 3'AG 29851508 Downstream 12bp
chr1 164790808 164790808 1 + G A LUSC 164790815 + 164790795 164790835 41 ATCAGCCAGACAGGAGGATACAGTGATGGACTCGCAGCCAG ATCAGCCAGACAGAAGGATACAGTGATGGACTCGCAGCCAG < 41bp 1 0.643239285670352 1 0.386804282665253 experiment 0.713521428659297 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164790815 chr1:164790808 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_29258 0 0 1 0 1 PBX1 chr1:164790774 3'AG 164790774 Downstream 35bp
chr17 1747903 1747903 1 + C T LUSC 1747884 + 1747864 1747904 41 GTTTTCAGCTTTCATGTTGGCGACACAGTTGAACCCTCTCG GTTTTCAGCTTTCATGTTGGCGACACAGTTGAACCCTCTTG < 41bp 1 0.639992622829628 1 0.180166810750961 experiment 0.720014754340743 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPA1 ENSG00000132383 CDS Human protein_coding chr17:1747884 chr17:1747903 synonymous SNV . 0 40 hm5C_associated_SNPs_29259 0 0 1 0 2 RPA1 chr17:1747872 3'AG 1747872 Downstream 32bp
chr17 1747903 1747903 1 + C T LUSC 1747884 + 1747864 1747904 41 GTTTTCAGCTTTCATGTTGGCGACACAGTTGAACCCTCTCG GTTTTCAGCTTTCATGTTGGCGACACAGTTGAACCCTCTTG < 41bp 1 0.639992622829628 1 0.180166810750961 experiment 0.720014754340743 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPA1 ENSG00000132383 CDS Human protein_coding chr17:1747884 chr17:1747903 synonymous SNV . 0 40 hm5C_associated_SNPs_29259 0 0 1 0 2 RPA1 chr17:1747980 5'GT 1747980 Upstream 78bp
chr16 4700463 4700463 1 + C T LUSC 4700472 + 4700452 4700492 41 GATCTGAACTTCCTGGGCAGCCGCCCGGTCCAGGTGGGTCT GATCTGAACTTTCTGGGCAGCCGCCCGGTCCAGGTGGGTCT < 41bp 1 0.0940700627179087 1 0.106842458248138 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MGRN1 ENSG00000102858 CDS Human protein_coding chr16:4700472 chr16:4700463 synonymous SNV . 0 12 hm5C_associated_SNPs_29261 0 0 1 0 2 MGRN1 chr16:4700366 3'AG 4700366 Downstream 98bp
chr16 4700463 4700463 1 + C T LUSC 4700472 + 4700452 4700492 41 GATCTGAACTTCCTGGGCAGCCGCCCGGTCCAGGTGGGTCT GATCTGAACTTTCTGGGCAGCCGCCCGGTCCAGGTGGGTCT < 41bp 1 0.0940700627179087 1 0.106842458248138 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MGRN1 ENSG00000102858 CDS Human protein_coding chr16:4700472 chr16:4700463 synonymous SNV . 0 12 hm5C_associated_SNPs_29261 0 0 1 0 2 MGRN1 chr16:4700484 5'GT 4700484 Upstream 22bp
chr5 72798834 72798834 1 + C T LUSC 72798844 + 72798824 72798864 41 CATTACAGGCCATGCTGAGACAAAGCAGCTGACAGAAATGC CATTACAGGCTATGCTGAGACAAAGCAGCTGACAGAAATGC < 41bp 1 0.620484198751193 1 0.363069653511047 experiment 0.759031602497614 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTF3 ENSG00000145741 CDS Human protein_coding chr5:72798844 chr5:72798834 nonsynonymous SNV 1.000 0 11 hm5C_associated_SNPs_29263 0 0 1 0 1 BTF3 chr5:72798741 3'AG 72798741 Downstream 94bp
chr5 150867566 150867566 1 + C T LUSC 150867554 + 150867534 150867574 41 CTCCCTGCAGGCATCTTGGCCATCCTCATCCCCCGCCTGGA CTCCCTGCAGGCATCTTGGCCATCCTCATCCCTCGCCTGGA < 41bp 1 0.0924537125142197 1 0.0201666057109833 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150867554 chr5:150867566 synonymous SNV . 0 33 hm5C_associated_SNPs_29264 0 0 0 0 1 SLC36A1 chr5:150867544 3'AG 150867544 Downstream 23bp
chr5 175933835 175933835 1 + C T LUSC 175933837 + 175933817 175933857 41 CAGATTGAAGCCAATTTTCCCAGGCGAGTGCTGCCCTGCAT CAGATTGAAGCCAATTTTTCCAGGCGAGTGCTGCCCTGCAT < 41bp 1 0.694550036603567 1 0.868500471115112 experiment 0.610899926792865 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAF2 ENSG00000113194 CDS Human protein_coding chr5:175933837 chr5:175933835 nonsynonymous SNV 0.997 4 19 hm5C_associated_SNPs_29265 0 0 1 0 1 FAF2 chr5:175933769 3'AG 175933769 Downstream 67bp
chr5 175933835 175933835 1 + C T LUSC 175933855 + 175933835 175933875 41 CCCAGGCGAGTGCTGCCCTGCATCCCTTCAGAGGAGTGGCC TCCAGGCGAGTGCTGCCCTGCATCCCTTCAGAGGAGTGGCC < 41bp 1 0.114440371721481 1 0.0869822204113007 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAF2 ENSG00000113194 CDS Human protein_coding chr5:175933855 chr5:175933835 nonsynonymous SNV 0.997 4 1 hm5C_associated_SNPs_29266 0 0 1 0 1 FAF2 chr5:175933769 3'AG 175933769 Downstream 67bp
chr13 113459345 113459345 1 + C T LUSC 113459327 + 113459307 113459347 41 GAACAATTCAGAAGAGTAGCCAACTTTTATTTCCTTATCAT GAACAATTCAGAAGAGTAGCCAACTTTTATTTCCTTATTAT < 41bp 1 0.0865604325498949 1 0.120345741510391 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATP11A ENSG00000068650 CDS Human protein_coding chr13:113459327 chr13:113459345 synonymous SNV . 0 39 hm5C_associated_SNPs_29268 0 0 1 0 2 ATP11A chr13:113459271 3'AG 113459271 Downstream 75bp
chr13 113459345 113459345 1 + C T LUSC 113459327 + 113459307 113459347 41 GAACAATTCAGAAGAGTAGCCAACTTTTATTTCCTTATCAT GAACAATTCAGAAGAGTAGCCAACTTTTATTTCCTTATTAT < 41bp 1 0.0865604325498949 1 0.120345741510391 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATP11A ENSG00000068650 CDS Human protein_coding chr13:113459327 chr13:113459345 synonymous SNV . 0 39 hm5C_associated_SNPs_29268 0 0 1 0 2 ATP11A chr13:113459360 5'GT 113459360 Upstream 16bp
chr1 28159278 28159278 1 + C T LUSC 28159277 + 28159257 28159297 41 TATTTTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTG TATTTTTCAGGGCAGGTAAGCTCCCTCCCGGTTTACATCTG < 41bp 1 0.359049597812901 1 0.39692023396492 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159277 chr1:28159278 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_29269 0 0 1 0 2 PPP1R8 chr1:28159267 3'AG 28159267 Downstream 12bp
chr1 28159278 28159278 1 + C T LUSC 28159277 + 28159257 28159297 41 TATTTTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTG TATTTTTCAGGGCAGGTAAGCTCCCTCCCGGTTTACATCTG < 41bp 1 0.359049597812901 1 0.39692023396492 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159277 chr1:28159278 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_29269 0 0 1 0 2 PPP1R8 chr1:28159327 5'GT 28159327 Upstream 50bp
chr1 28159278 28159278 1 + C T LUSC 28159279 + 28159259 28159299 41 TTTTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGA TTTTTCAGGGCAGGTAAGCTCCCTCCCGGTTTACATCTGGA < 41bp 1 0.0983199551951231 1 0.122031956911087 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159279 chr1:28159278 nonsynonymous SNV 0.996 4 20 hm5C_associated_SNPs_29270 0 0 1 0 2 PPP1R8 chr1:28159267 3'AG 28159267 Downstream 12bp
chr1 28159278 28159278 1 + C T LUSC 28159279 + 28159259 28159299 41 TTTTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGA TTTTTCAGGGCAGGTAAGCTCCCTCCCGGTTTACATCTGGA < 41bp 1 0.0983199551951231 1 0.122031956911087 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159279 chr1:28159278 nonsynonymous SNV 0.996 4 20 hm5C_associated_SNPs_29270 0 0 1 0 2 PPP1R8 chr1:28159327 5'GT 28159327 Upstream 50bp
chr1 28159278 28159278 1 + C T LUSC 28159280 + 28159260 28159300 41 TTTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGAT TTTTCAGGGCAGGTAAGCTCCCTCCCGGTTTACATCTGGAT < 41bp 1 0.064707099614726 1 0.0674471259117126 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159280 chr1:28159278 nonsynonymous SNV 0.996 4 19 hm5C_associated_SNPs_29271 0 0 1 0 2 PPP1R8 chr1:28159267 3'AG 28159267 Downstream 12bp
chr1 28159278 28159278 1 + C T LUSC 28159280 + 28159260 28159300 41 TTTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGAT TTTTCAGGGCAGGTAAGCTCCCTCCCGGTTTACATCTGGAT < 41bp 1 0.064707099614726 1 0.0674471259117126 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159280 chr1:28159278 nonsynonymous SNV 0.996 4 19 hm5C_associated_SNPs_29271 0 0 1 0 2 PPP1R8 chr1:28159327 5'GT 28159327 Upstream 50bp
chr1 28159278 28159278 1 + C T LUSC 28159281 + 28159261 28159301 41 TTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATG TTTCAGGGCAGGTAAGCTCCCTCCCGGTTTACATCTGGATG < 41bp 1 0.385380719327919 1 0.0422553420066833 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159281 chr1:28159278 nonsynonymous SNV 0.996 4 18 hm5C_associated_SNPs_29272 0 0 1 0 2 PPP1R8 chr1:28159267 3'AG 28159267 Downstream 12bp
chr1 28159278 28159278 1 + C T LUSC 28159281 + 28159261 28159301 41 TTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATG TTTCAGGGCAGGTAAGCTCCCTCCCGGTTTACATCTGGATG < 41bp 1 0.385380719327919 1 0.0422553420066833 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159281 chr1:28159278 nonsynonymous SNV 0.996 4 18 hm5C_associated_SNPs_29272 0 0 1 0 2 PPP1R8 chr1:28159327 5'GT 28159327 Upstream 50bp
chr1 28159278 28159278 1 + C T LUSC 28159283 + 28159263 28159303 41 TCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATGTA TCAGGGCAGGTAAGCTCCCTCCCGGTTTACATCTGGATGTA < 41bp 1 0.593286680873816 1 0.239507049322128 experiment 0.813426638252368 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159283 chr1:28159278 nonsynonymous SNV 0.996 4 16 hm5C_associated_SNPs_29273 0 0 1 0 2 PPP1R8 chr1:28159267 3'AG 28159267 Downstream 12bp
chr1 28159278 28159278 1 + C T LUSC 28159283 + 28159263 28159303 41 TCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATGTA TCAGGGCAGGTAAGCTCCCTCCCGGTTTACATCTGGATGTA < 41bp 1 0.593286680873816 1 0.239507049322128 experiment 0.813426638252368 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159283 chr1:28159278 nonsynonymous SNV 0.996 4 16 hm5C_associated_SNPs_29273 0 0 1 0 2 PPP1R8 chr1:28159327 5'GT 28159327 Upstream 50bp
chr1 28159278 28159278 1 + C T LUSC 28159284 + 28159264 28159304 41 CAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATGTAG CAGGGCAGGTAAGCTCCCTCCCGGTTTACATCTGGATGTAG < 41bp 1 0.378476257625227 1 0.158987760543823 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159284 chr1:28159278 nonsynonymous SNV 0.996 4 15 hm5C_associated_SNPs_29274 0 0 1 0 2 PPP1R8 chr1:28159267 3'AG 28159267 Downstream 12bp
chr1 28159278 28159278 1 + C T LUSC 28159284 + 28159264 28159304 41 CAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATGTAG CAGGGCAGGTAAGCTCCCTCCCGGTTTACATCTGGATGTAG < 41bp 1 0.378476257625227 1 0.158987760543823 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159284 chr1:28159278 nonsynonymous SNV 0.996 4 15 hm5C_associated_SNPs_29274 0 0 1 0 2 PPP1R8 chr1:28159327 5'GT 28159327 Upstream 50bp
chr1 28159278 28159278 1 + C T LUSC 28159285 + 28159265 28159305 41 AGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATGTAGT AGGGCAGGTAAGCTCCCTCCCGGTTTACATCTGGATGTAGT < 41bp 1 0.279404807623189 1 0.266636967658997 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159285 chr1:28159278 nonsynonymous SNV 0.996 4 14 hm5C_associated_SNPs_29275 0 0 1 0 2 PPP1R8 chr1:28159267 3'AG 28159267 Downstream 12bp
chr1 28159278 28159278 1 + C T LUSC 28159285 + 28159265 28159305 41 AGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATGTAGT AGGGCAGGTAAGCTCCCTCCCGGTTTACATCTGGATGTAGT < 41bp 1 0.279404807623189 1 0.266636967658997 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159285 chr1:28159278 nonsynonymous SNV 0.996 4 14 hm5C_associated_SNPs_29275 0 0 1 0 2 PPP1R8 chr1:28159327 5'GT 28159327 Upstream 50bp
chr12 113388595 113388595 1 + C T LUSC 113388604 + 113388584 113388624 41 GGACCAGGGGCCCCGCCGCGCAGAGATCCTTGATGAGATGC GGACCAGGGGCTCCGCCGCGCAGAGATCCTTGATGAGATGC < 41bp 1 0.49328119911102 1 0.527812540531158 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OAS3 ENSG00000111331 CDS Human protein_coding chr12:113388604 chr12:113388595 nonsynonymous SNV 0.001 0 12 hm5C_associated_SNPs_29276 0 0 0 0 1 OAS3 chr12:113388498 3'AG 113388498 Downstream 98bp
chr19 39860353 39860353 1 + C T LUSC 39860363 + 39860343 39860383 41 TCCTGCTGTCCCACCTTCCCCTGCTTCAGCCAGGCAACACA TCCTGCTGTCTCACCTTCCCCTGCTTCAGCCAGGCAACACA < 41bp 1 0.423511515932666 1 0.209067523479462 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39860363 chr19:39860353 synonymous SNV . 0 11 hm5C_associated_SNPs_29277 0 0 1 0 1 SAMD4B chr19:39860295 3'AG 39860295 Downstream 59bp
chr19 39860353 39860353 1 + C T LUSC 39860373 + 39860353 39860393 41 CCACCTTCCCCTGCTTCAGCCAGGCAACACAGAGGCCAAGT TCACCTTCCCCTGCTTCAGCCAGGCAACACAGAGGCCAAGT < 41bp 1 0.477652743156912 1 0.541096210479736 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39860373 chr19:39860353 synonymous SNV . 0 1 hm5C_associated_SNPs_29278 0 0 1 0 1 SAMD4B chr19:39860295 3'AG 39860295 Downstream 59bp
chr20 3781951 3781951 1 + C T LUSC 3781963 + 3781943 3781983 41 CCCCTGGCCCTAGGTCGCTTCTCTCTGACCCCTGCAGAGGG CCCCTGGCTCTAGGTCGCTTCTCTCTGACCCCTGCAGAGGG < 41bp 1 0.186554405420898 1 0.700646162033081 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC25B ENSG00000101224 CDS Human protein_coding chr20:3781963 chr20:3781951 synonymous SNV . 0 9 hm5C_associated_SNPs_29279 0 0 1 0 1 CDC25B chr20:3782035 5'GT 3782035 Upstream 85bp
chr19 39215157 39215157 1 + C T LUSC 39215163 + 39215143 39215183 41 CTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC CTGCGCCGCCAGTTTGCCAGCCAGGCCAATGTTGTGGGGCC < 41bp 1 0.303340114911917 1 0.785703897476196 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215163 chr19:39215157 synonymous SNV . 0 15 hm5C_associated_SNPs_29280 0 0 1 0 2 ACTN4 chr19:39215071 3'AG 39215071 Downstream 87bp
chr19 39215157 39215157 1 + C T LUSC 39215163 + 39215143 39215183 41 CTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC CTGCGCCGCCAGTTTGCCAGCCAGGCCAATGTTGTGGGGCC < 41bp 1 0.303340114911917 1 0.785703897476196 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215163 chr19:39215157 synonymous SNV . 0 15 hm5C_associated_SNPs_29280 0 0 1 0 2 ACTN4 chr19:39215205 5'GT 39215205 Upstream 49bp
chr19 39215157 39215157 1 + C T LUSC 39215169 + 39215149 39215189 41 CGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCCCTGGAT CGCCAGTTTGCCAGCCAGGCCAATGTTGTGGGGCCCTGGAT < 41bp 1 0.270402974095775 1 0.08881875872612 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215169 chr19:39215157 synonymous SNV . 0 9 hm5C_associated_SNPs_29281 0 0 1 0 2 ACTN4 chr19:39215071 3'AG 39215071 Downstream 87bp
chr19 39215157 39215157 1 + C T LUSC 39215169 + 39215149 39215189 41 CGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCCCTGGAT CGCCAGTTTGCCAGCCAGGCCAATGTTGTGGGGCCCTGGAT < 41bp 1 0.270402974095775 1 0.08881875872612 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215169 chr19:39215157 synonymous SNV . 0 9 hm5C_associated_SNPs_29281 0 0 1 0 2 ACTN4 chr19:39215205 5'GT 39215205 Upstream 49bp
chr2 32666418 32666418 1 + A T LUSC 32666438 + 32666418 32666458 41 AATGAAAATACAAGTGGCACCCGTAAATCTGAAAACCTCCG TATGAAAATACAAGTGGCACCCGTAAATCTGAAAACCTCCG < 41bp 1 0.0401067832982818 1 0.424582988023758 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32666438 chr2:32666418 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_29282 0 0 1 0 1 BIRC6 chr2:32666397 3'AG 32666397 Downstream 22bp
chr16 2284196 2284196 1 + A G LUSC 2284209 + 2284189 2284229 41 TGCGCGCAGTGTGGCAAGGCCTTCCCCAAGGCCTACCTGCT TGCGCGCGGTGTGGCAAGGCCTTCCCCAAGGCCTACCTGCT < 41bp 1 0.0594601152444705 1 0.1412692964077 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control E4F1 ENSG00000167967 CDS Human protein_coding chr16:2284209 chr16:2284196 nonsynonymous SNV 0.863 0 8 hm5C_associated_SNPs_29283 0 0 1 0 1 E4F1 chr16:2284172 3'AG 2284172 Downstream 25bp
chr16 2284196 2284196 1 + A G LUSC 2284212 + 2284192 2284232 41 GCGCAGTGTGGCAAGGCCTTCCCCAAGGCCTACCTGCTCAA GCGCGGTGTGGCAAGGCCTTCCCCAAGGCCTACCTGCTCAA < 41bp 1 0.646469317020565 1 0.200860261917114 experiment 0.70706136595887 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control E4F1 ENSG00000167967 CDS Human protein_coding chr16:2284212 chr16:2284196 nonsynonymous SNV 0.863 0 5 hm5C_associated_SNPs_29284 0 0 1 0 1 E4F1 chr16:2284172 3'AG 2284172 Downstream 25bp
chr12 109629527 109629527 1 + G A LUSC 109629531 + 109629511 109629551 41 CCAGAACAACGACATCGACACCGGGTGGTTGGACTACCTCA CCAGAACAACGACATCAACACCGGGTGGTTGGACTACCTCA < 41bp 1 0.347225104516806 1 0.731180012226105 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109629531 chr12:109629527 nonsynonymous SNV 0.450 4 17 hm5C_associated_SNPs_29285 0 0 1 0 1 ACACB chr12:109629568 5'GT 109629568 Upstream 42bp
chr16 81654514 81654514 1 + C T LUSC 81654513 + 81654493 81654533 41 TACCTGCGAGACCAGTGGTTCCATTCTCTGCAATGGAAGGT TACCTGCGAGACCAGTGGTTCTATTCTCTGCAATGGAAGGT < 41bp 1 0.0454780528480105 1 0.0868176519870758 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CMIP ENSG00000153815 CDS Human protein_coding chr16:81654513 chr16:81654514 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_29286 0 0 1 0 2 CMIP chr16:81654481 3'AG 81654481 Downstream 34bp
chr16 81654514 81654514 1 + C T LUSC 81654513 + 81654493 81654533 41 TACCTGCGAGACCAGTGGTTCCATTCTCTGCAATGGAAGGT TACCTGCGAGACCAGTGGTTCTATTCTCTGCAATGGAAGGT < 41bp 1 0.0454780528480105 1 0.0868176519870758 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CMIP ENSG00000153815 CDS Human protein_coding chr16:81654513 chr16:81654514 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_29286 0 0 1 0 2 CMIP chr16:81654531 5'GT 81654531 Upstream 18bp
chrX 149905133 149905133 1 + C T LUSC 149905115 + 149905095 149905135 41 GTGCTTACCCAAATGCAGAACTTGTGTTCTTGGAGATCCAC GTGCTTACCCAAATGCAGAACTTGTGTTCTTGGAGATCTAC < 41bp 1 0.128162746541938 1 0.0456609129905701 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149905115 chrX:149905133 nonsynonymous SNV 0.998 4 39 hm5C_associated_SNPs_29287 0 0 1 0 1 MTMR1 chrX:149905067 3'AG 149905067 Downstream 67bp
chr6 32123555 32123555 1 + A G LUSC 32123537 + 32123517 32123557 41 TTCTTTCATCTCCCTCTCCTCTCCACAGATGGGACAGTATG TTCTTTCATCTCCCTCTCCTCTCCACAGATGGGACAGTGTG < 41bp 1 0.691291780664513 1 0.947803735733032 experiment 0.617416438670974 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control PPT2 ENSG00000221988;ENSG00000258388 CDS Human other chr6:32123537 chr6:32123555 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_29290 0 0 1 2 2 PPT2 chr6:32123465 3'AG 32123465 Downstream 91bp
chr6 32123555 32123555 1 + A G LUSC 32123537 + 32123517 32123557 41 TTCTTTCATCTCCCTCTCCTCTCCACAGATGGGACAGTATG TTCTTTCATCTCCCTCTCCTCTCCACAGATGGGACAGTGTG < 41bp 1 0.691291780664513 1 0.947803735733032 experiment 0.617416438670974 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control PPT2 ENSG00000221988;ENSG00000258388 CDS Human other chr6:32123537 chr6:32123555 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_29290 0 0 1 2 2 PPT2 chr6:32123560 5'GT 32123560 Upstream 6bp
chr5 139893001 139893001 1 + C A LUSC 139893005 + 139892985 139893025 41 TTGTGAAGGCTAAAGACCAGCAAGCTGCAGAAGCAAATAAG TTGTGAAGGCTAAAGAACAGCAAGCTGCAGAAGCAAATAAG < 41bp 1 0.18816564612212 1 0.358239591121674 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139893005 chr5:139893001 nonsynonymous SNV 0.991 3 17 hm5C_associated_SNPs_29291 0 0 1 0 2 ANKHD1;ANKHD1-EIF4EBP3 chr5:139892948 3'AG 139892948 Downstream 54bp
chr5 139893001 139893001 1 + C A LUSC 139893005 + 139892985 139893025 41 TTGTGAAGGCTAAAGACCAGCAAGCTGCAGAAGCAAATAAG TTGTGAAGGCTAAAGAACAGCAAGCTGCAGAAGCAAATAAG < 41bp 1 0.18816564612212 1 0.358239591121674 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139893005 chr5:139893001 nonsynonymous SNV 0.991 3 17 hm5C_associated_SNPs_29291 0 0 1 0 2 ANKHD1;ANKHD1-EIF4EBP3 chr5:139893064 5'GT 139893064 Upstream 64bp
chr3 15262296 15262296 1 + C T LUSC 15262290 + 15262270 15262310 41 TGTTCCTCTCTGTTATAGAGCAGAAGCGCTGAGTGAGCCTT TGTTCCTCTCTGTTATAGAGCAGAAGTGCTGAGTGAGCCTT < 41bp 1 0.75297495035622 1 0.082782655954361 experiment 0.494050099287561 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CAPN7 ENSG00000131375 CDS Human protein_coding chr3:15262290 chr3:15262296 nonsynonymous SNV 0.994 0 27 hm5C_associated_SNPs_29292 0 0 1 0 1 CAPN7 chr3:15262288 3'AG 15262288 Downstream 9bp
chr9 131843434 131843434 1 + G T LUSC 131843453 + 131843433 131843473 41 CGCTCCCCGCTTCATGGCGGCCGGTGACCCTCACCCACGTC CTCTCCCCGCTTCATGGCGGCCGGTGACCCTCACCCACGTC < 41bp 1 0.34330837761143 1 0.421691328287125 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131843453 chr9:131843434 synonymous SNV . 0 2 hm5C_associated_SNPs_29293 0 0 1 0 1 DOLPP1 chr9:131843486 5'GT 131843486 Upstream 53bp
chr17 7483875 7483875 1 + A G LUSC 7483883 + 7483863 7483903 41 TCTCATTCCCCTATGGACACCTCAGCTTTGGATTCATGCAG TCTCATTCCCCTGTGGACACCTCAGCTTTGGATTCATGCAG < 41bp 1 0.483821272919669 1 0.247360557317734 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CD68 ENSG00000129226 CDS Human protein_coding chr17:7483883 chr17:7483875 nonsynonymous SNV 0.994 0 13 hm5C_associated_SNPs_29294 0 0 0 0 2 CD68 chr17:7483784 3'AG 7483784 Downstream 92bp
chr17 7483875 7483875 1 + A G LUSC 7483883 + 7483863 7483903 41 TCTCATTCCCCTATGGACACCTCAGCTTTGGATTCATGCAG TCTCATTCCCCTGTGGACACCTCAGCTTTGGATTCATGCAG < 41bp 1 0.483821272919669 1 0.247360557317734 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CD68 ENSG00000129226 CDS Human protein_coding chr17:7483883 chr17:7483875 nonsynonymous SNV 0.994 0 13 hm5C_associated_SNPs_29294 0 0 0 0 2 CD68 chr17:7483903 5'GT 7483903 Upstream 29bp
chr10 45486408 45486408 1 + T G LUSC 45486398 + 45486378 45486418 41 AACCACCTTCTTTTTCAGAGCGGACAAAATTAAAAGACTGC AACCACCTTCTTTTTCAGAGCGGACAAAATGAAAAGACTGC < 41bp 1 0.0752487181593792 1 0.289820343255997 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45486398 chr10:45486408 stopgain 1.000 1 31 hm5C_associated_SNPs_29295 0 0 1 0 1 RASSF4 chr10:45486396 3'AG 45486396 Downstream 13bp
chr3 20019841 20019841 1 + A G LUSC 20019825 + 20019805 20019845 41 GCACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA GCACAGTCCTATGCAGATGACAATAGTTTATTATTCGTGGA < 41bp 1 0.508938689208916 1 0.139919310808182 experiment 0.982122621582168 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019825 chr3:20019841 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_29299 0 0 1 1 2 RAB5A chr3:20019802 3'AG 20019802 Downstream 40bp
chr3 20019841 20019841 1 + A G LUSC 20019825 + 20019805 20019845 41 GCACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA GCACAGTCCTATGCAGATGACAATAGTTTATTATTCGTGGA < 41bp 1 0.508938689208916 1 0.139919310808182 experiment 0.982122621582168 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019825 chr3:20019841 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_29299 0 0 1 1 2 RAB5A chr3:20019895 5'GT 20019895 Upstream 55bp
chr20 49458360 49458360 1 + G T LUSC 49458380 + 49458360 49458400 41 GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGCGGAG TCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGCGGAG < 41bp 1 0.267629642851241 1 0.0470914244651794 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49458380 chr20:49458360 nonsynonymous SNV 0.116 4 1 hm5C_associated_SNPs_29300 0 0 0 0 2 BCAS4 chr20:49458303 3'AG 49458303 Downstream 58bp
chr20 49458360 49458360 1 + G T LUSC 49458380 + 49458360 49458400 41 GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGCGGAG TCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGCGGAG < 41bp 1 0.267629642851241 1 0.0470914244651794 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49458380 chr20:49458360 nonsynonymous SNV 0.116 4 1 hm5C_associated_SNPs_29300 0 0 0 0 2 BCAS4 chr20:49458437 5'GT 49458437 Upstream 78bp
chr5 21501807 21501807 1 + C G LUSC 21501804 + 21501784 21501824 41 TTTGCCTTGAATCCCAGGATCCACCTTGATGTTCAGTGAAG TTTGCCTTGAATCCCAGGATCCAGCTTGATGTTCAGTGAAG < 41bp 1 0.132302966927298 1 0.0491733551025391 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21501804 chr5:21501807 . . 0 24 hm5C_associated_SNPs_29301 0 0 1 0 1 GUSBP1 chr5:21501801 3'AG 21501801 Downstream 7bp
chr3 179424775 179424775 1 + G T LUSC 179424778 + 179424758 179424798 41 TCTCCATACAGAAAGCAGGACCCAGACACGTGGGAAAATGA TCTCCATACAGAAAGCATGACCCAGACACGTGGGAAAATGA < 41bp 1 0.0756846331473705 1 0.0663194060325623 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USP13 ENSG00000058056 CDS Human protein_coding chr3:179424778 chr3:179424775 nonsynonymous SNV 0.996 3 18 hm5C_associated_SNPs_29302 0 0 1 0 2 USP13 chr3:179424722 3'AG 179424722 Downstream 54bp
chr3 179424775 179424775 1 + G T LUSC 179424778 + 179424758 179424798 41 TCTCCATACAGAAAGCAGGACCCAGACACGTGGGAAAATGA TCTCCATACAGAAAGCATGACCCAGACACGTGGGAAAATGA < 41bp 1 0.0756846331473705 1 0.0663194060325623 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USP13 ENSG00000058056 CDS Human protein_coding chr3:179424778 chr3:179424775 nonsynonymous SNV 0.996 3 18 hm5C_associated_SNPs_29302 0 0 1 0 2 USP13 chr3:179424864 5'GT 179424864 Upstream 90bp
chr17 53014037 53014037 1 + G A LUSC 53014053 + 53014033 53014073 41 TTTTGGAGCAAAATAAGAACCAGAAGGAAGCCACCAATGTA TTTTAGAGCAAAATAAGAACCAGAAGGAAGCCACCAATGTA < 41bp 1 0.664306814269484 1 0.572838187217712 experiment 0.671386371461031 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014053 chr17:53014037 synonymous SNV . 0 5 hm5C_associated_SNPs_29303 0 0 1 0 2 TOM1L1 chr17:53014010 3'AG 53014010 Downstream 28bp
chr17 53014037 53014037 1 + G A LUSC 53014053 + 53014033 53014073 41 TTTTGGAGCAAAATAAGAACCAGAAGGAAGCCACCAATGTA TTTTAGAGCAAAATAAGAACCAGAAGGAAGCCACCAATGTA < 41bp 1 0.664306814269484 1 0.572838187217712 experiment 0.671386371461031 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014053 chr17:53014037 synonymous SNV . 0 5 hm5C_associated_SNPs_29303 0 0 1 0 2 TOM1L1 chr17:53014070 5'GT 53014070 Upstream 34bp
chr9 80858453 80858453 1 + G T LUSC 80858436 + 80858416 80858456 41 GAGTCTTCGCTATAGGAGACCTGATCTTGACTGTATGGCTG GAGTCTTCGCTATAGGAGACCTGATCTTGACTGTATGTCTG < 41bp 1 0.330728235189065 1 0.0529457926750183 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP78 ENSG00000148019 CDS Human protein_coding chr9:80858436 chr9:80858453 nonsynonymous SNV 0.998 2 38 hm5C_associated_SNPs_29308 0 0 1 0 2 CEP78 chr9:80858378 3'AG 80858378 Downstream 76bp
chr9 80858453 80858453 1 + G T LUSC 80858436 + 80858416 80858456 41 GAGTCTTCGCTATAGGAGACCTGATCTTGACTGTATGGCTG GAGTCTTCGCTATAGGAGACCTGATCTTGACTGTATGTCTG < 41bp 1 0.330728235189065 1 0.0529457926750183 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP78 ENSG00000148019 CDS Human protein_coding chr9:80858436 chr9:80858453 nonsynonymous SNV 0.998 2 38 hm5C_associated_SNPs_29308 0 0 1 0 2 CEP78 chr9:80858552 5'GT 80858552 Upstream 100bp
chr3 127335943 127335943 1 + C T LUSC 127335929 + 127335909 127335949 41 GGGCCCTGGTTCTGGCTGACCGAGGAGTGTGTCTCATTGAT GGGCCCTGGTTCTGGCTGACCGAGGAGTGTGTCTTATTGAT < 41bp 1 0.699797931923965 1 0.758516728878021 experiment 0.600404136152071 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127335929 chr3:127335943 synonymous SNV . 0 35 hm5C_associated_SNPs_29309 0 0 1 0 1 MCM2 chr3:127335961 5'GT 127335961 Upstream 19bp
chr12 112926290 112926290 1 + C G LUSC 112926274 + 112926254 112926294 41 ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTTAT ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTGTTAT < 41bp 1 0.159755107261468 1 0.0231238603591919 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926274 chr12:112926290 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_29310 0 0 0 0 2 PTPN11 chr12:112926247 3'AG 112926247 Downstream 44bp
chr12 112926290 112926290 1 + C G LUSC 112926274 + 112926254 112926294 41 ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTTAT ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTGTTAT < 41bp 1 0.159755107261468 1 0.0231238603591919 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926274 chr12:112926290 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_29310 0 0 0 0 2 PTPN11 chr12:112926314 5'GT 112926314 Upstream 25bp
chr1 156883186 156883186 1 + C G LUSC 156883191 + 156883171 156883211 41 GTCCCCTCTTAGGTTCCAGGCCCGCTCTTTGCCAGCCTGCA GTCCCCTCTTAGGTTGCAGGCCCGCTCTTTGCCAGCCTGCA < 41bp 1 0.110005114741447 1 0.0402844250202179 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156883191 chr1:156883186 nonsynonymous SNV 0.960 2 16 hm5C_associated_SNPs_29311 0 0 0 0 1 PEAR1 chr1:156883183 3'AG 156883183 Downstream 4bp
chr19 36113809 36113809 1 + G C LUSC 36113820 + 36113800 36113840 41 GCCCTCTCTGAGGAGCTCTGCCAGGGCCTGTCCCTGCCCCA GCCCTCTCTCAGGAGCTCTGCCAGGGCCTGTCCCTGCCCCA < 41bp 1 0.621589638317009 1 0.546387374401093 experiment 0.756820723365983 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control HAUS5 ENSG00000249115 CDS Human protein_coding chr19:36113820 chr19:36113809 nonsynonymous SNV 0.106 0 10 hm5C_associated_SNPs_29312 0 0 1 0 1 HAUS5 chr19:36113778 3'AG 36113778 Downstream 32bp
chr19 33586724 33586724 1 + G C LUSC 33586722 + 33586702 33586742 41 CCCTGGAAGCTCGGAAGGATCTGAGGTATTGCATGGTGTGA CCCTGGAAGCTCGGAAGGATCTCAGGTATTGCATGGTGTGA < 41bp 1 0.740864378244254 1 0.179057151079178 experiment 0.518271243511492 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33586722 chr19:33586724 nonsynonymous SNV 0.987 1 23 hm5C_associated_SNPs_29313 0 0 1 0 2 GPATCH1 chr19:33586668 3'AG 33586668 Downstream 57bp
chr19 33586724 33586724 1 + G C LUSC 33586722 + 33586702 33586742 41 CCCTGGAAGCTCGGAAGGATCTGAGGTATTGCATGGTGTGA CCCTGGAAGCTCGGAAGGATCTCAGGTATTGCATGGTGTGA < 41bp 1 0.740864378244254 1 0.179057151079178 experiment 0.518271243511492 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33586722 chr19:33586724 nonsynonymous SNV 0.987 1 23 hm5C_associated_SNPs_29313 0 0 1 0 2 GPATCH1 chr19:33586726 5'GT 33586726 Upstream 3bp
chr5 149751728 149751728 1 + G A LUSC 149751738 + 149751718 149751758 41 CAAGAAGCCAGAAGAGGAGTCAGAGAGTAGTGAGGAGGGAT CAAGAAGCCAAAAGAGGAGTCAGAGAGTAGTGAGGAGGGAT < 41bp 1 0.309406457919195 1 0.654821693897247 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149751738 chr5:149751728 nonsynonymous SNV 0.259 0 11 hm5C_associated_SNPs_29314 0 0 1 0 1 TCOF1 chr5:149751799 5'GT 149751799 Upstream 72bp
chr3 186302269 186302269 1 + G C LUSC 186302256 + 186302236 186302276 41 TAAGATCACCAGGCCAGGAGCGAAGCTATGGAAGAAAGGGG TAAGATCACCAGGCCAGGAGCGAAGCTATGGAACAAAGGGG < 41bp 1 0.329953507137883 1 0.396906077861786 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186302256 chr3:186302269 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_29315 0 0 1 0 1 DNAJB11 chr3:186302219 3'AG 186302219 Downstream 51bp
chr3 186302269 186302269 1 + G C LUSC 186302261 + 186302241 186302281 41 TCACCAGGCCAGGAGCGAAGCTATGGAAGAAAGGGGAAGGG TCACCAGGCCAGGAGCGAAGCTATGGAACAAAGGGGAAGGG < 41bp 1 0.424866263662923 1 0.118182748556137 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186302261 chr3:186302269 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_29316 0 0 1 0 1 DNAJB11 chr3:186302219 3'AG 186302219 Downstream 51bp
chr8 124146371 124146371 1 + A T LUSC 124146369 + 124146349 124146389 41 CATAGGTATATATGAGAGATCGAGAAATTGCTGCCACAGCC CATAGGTATATATGAGAGATCGTGAAATTGCTGCCACAGCC < 41bp 1 0.647551424382993 1 0.541770696640015 experiment 0.704897151234014 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124146369 chr8:124146371 synonymous SNV . 0 23 hm5C_associated_SNPs_29317 0 0 1 0 2 TBC1D31 chr8:124146354 3'AG 124146354 Downstream 18bp
chr8 124146371 124146371 1 + A T LUSC 124146369 + 124146349 124146389 41 CATAGGTATATATGAGAGATCGAGAAATTGCTGCCACAGCC CATAGGTATATATGAGAGATCGTGAAATTGCTGCCACAGCC < 41bp 1 0.647551424382993 1 0.541770696640015 experiment 0.704897151234014 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124146369 chr8:124146371 synonymous SNV . 0 23 hm5C_associated_SNPs_29317 0 0 1 0 2 TBC1D31 chr8:124146446 5'GT 124146446 Upstream 76bp
chr5 149751721 149751721 1 + G T LUSC 149751738 + 149751718 149751758 41 CAAGAAGCCAGAAGAGGAGTCAGAGAGTAGTGAGGAGGGAT CAATAAGCCAGAAGAGGAGTCAGAGAGTAGTGAGGAGGGAT < 41bp 1 0.328704228790913 1 0.554904043674469 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149751738 chr5:149751721 nonsynonymous SNV 0.001 2 4 hm5C_associated_SNPs_29318 0 0 1 0 1 TCOF1 chr5:149751799 5'GT 149751799 Upstream 79bp
chr5 102472516 102472516 1 + A T LUSC 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATCAATGACTTGAATATGCAGTATCTCTTACAAGATAGG < 41bp 1 0.345679380180501 1 0.175760924816132 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472516 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_29319 0 0 1 2 2 PPIP5K2 chr5:102472436 3'AG 102472436 Downstream 81bp
chr5 102472516 102472516 1 + A T LUSC 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATCAATGACTTGAATATGCAGTATCTCTTACAAGATAGG < 41bp 1 0.345679380180501 1 0.175760924816132 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472516 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_29319 0 0 1 2 2 PPIP5K2 chr5:102472526 5'GT 102472526 Upstream 11bp
chr13 114541067 114541067 1 - G C LUSC 114541049 - 114541029 114541069 41 CTCTCCTCTGATGGCAGGACCTGCCAAGGTAAGGCCCTGGG CTGTCCTCTGATGGCAGGACCTGCCAAGGTAAGGCCCTGGG < 41bp 1 0.290643647087885 1 0.0919685661792755 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAS6 ENSG00000183087 CDS Human protein_coding chr13:114541049 chr13:114541067 synonymous SNV . 0 3 hm5C_associated_SNPs_29320 0 0 1 0 2 GAS6 chr13:114541042 5'GT 114541042 Upstream 26bp
chr13 114541067 114541067 1 - G C LUSC 114541049 - 114541029 114541069 41 CTCTCCTCTGATGGCAGGACCTGCCAAGGTAAGGCCCTGGG CTGTCCTCTGATGGCAGGACCTGCCAAGGTAAGGCCCTGGG < 41bp 1 0.290643647087885 1 0.0919685661792755 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAS6 ENSG00000183087 CDS Human protein_coding chr13:114541049 chr13:114541067 synonymous SNV . 0 3 hm5C_associated_SNPs_29320 0 0 1 0 2 GAS6 chr13:114541164 3'AG 114541164 Downstream 98bp
chr13 114541067 114541067 1 - G C LUSC 114541062 - 114541042 114541082 41 CAGCGGCTTCGAGCTCTCCTCTGATGGCAGGACCTGCCAAG CAGCGGCTTCGAGCTGTCCTCTGATGGCAGGACCTGCCAAG < 41bp 1 0.555083597298836 1 0.441971242427826 experiment 0.889832805402327 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GAS6 ENSG00000183087 CDS Human protein_coding chr13:114541062 chr13:114541067 synonymous SNV . 0 16 hm5C_associated_SNPs_29321 0 0 1 0 2 GAS6 chr13:114541042 5'GT 114541042 Upstream 26bp
chr13 114541067 114541067 1 - G C LUSC 114541062 - 114541042 114541082 41 CAGCGGCTTCGAGCTCTCCTCTGATGGCAGGACCTGCCAAG CAGCGGCTTCGAGCTGTCCTCTGATGGCAGGACCTGCCAAG < 41bp 1 0.555083597298836 1 0.441971242427826 experiment 0.889832805402327 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GAS6 ENSG00000183087 CDS Human protein_coding chr13:114541062 chr13:114541067 synonymous SNV . 0 16 hm5C_associated_SNPs_29321 0 0 1 0 2 GAS6 chr13:114541164 3'AG 114541164 Downstream 98bp
chr2 128184749 128184749 1 + G A LUSC 128184754 + 128184734 128184774 41 CCCCTCCTGGGTGCTGACAGCGGCCCACTGCATGGATGAGT CCCCTCCTGGGTGCTAACAGCGGCCCACTGCATGGATGAGT < 41bp 1 0.335146534687349 1 0.369492590427399 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128184754 chr2:128184749 synonymous SNV . 0 16 hm5C_associated_SNPs_29322 0 0 1 0 2 PROC chr2:128184681 3'AG 128184681 Downstream 69bp
chr2 128184749 128184749 1 + G A LUSC 128184754 + 128184734 128184774 41 CCCCTCCTGGGTGCTGACAGCGGCCCACTGCATGGATGAGT CCCCTCCTGGGTGCTAACAGCGGCCCACTGCATGGATGAGT < 41bp 1 0.335146534687349 1 0.369492590427399 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128184754 chr2:128184749 synonymous SNV . 0 16 hm5C_associated_SNPs_29322 0 0 1 0 2 PROC chr2:128184798 5'GT 128184798 Upstream 50bp
chr16 31235551 31235551 1 + G T LUSC 31235556 + 31235536 31235576 41 GCACCCGAGCCTGGTGGTGTCTTCCTCTGGCCGCCGCGTGG GCACCCGAGCCTGGTTGTGTCTTCCTCTGGCCGCCGCGTGG < 41bp 1 0.270687278980698 1 0.08463454246521 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31235556 chr16:31235551 synonymous SNV . 0 16 hm5C_associated_SNPs_29325 0 0 1 0 1 TRIM72 chr16:31235502 3'AG 31235502 Downstream 50bp
chr12 104341167 104341167 1 + G C LUSC 104341157 + 104341137 104341177 41 ACAGAAGACACAGAGCAAGACGAAGATGAAGAAATGGATGT ACAGAAGACACAGAGCAAGACGAAGATGAACAAATGGATGT < 41bp 1 0.534116523058723 1 0.163905620574951 experiment 0.931766953882553 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104341157 chr12:104341167 nonsynonymous SNV 0.046 1 31 hm5C_associated_SNPs_29326 0 0 1 0 3 HSP90B1 chr12:104341089 3'AG 104341089 Downstream 79bp
chr12 104341167 104341167 1 + G C LUSC 104341157 + 104341137 104341177 41 ACAGAAGACACAGAGCAAGACGAAGATGAAGAAATGGATGT ACAGAAGACACAGAGCAAGACGAAGATGAACAAATGGATGT < 41bp 1 0.534116523058723 1 0.163905620574951 experiment 0.931766953882553 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104341157 chr12:104341167 nonsynonymous SNV 0.046 1 31 hm5C_associated_SNPs_29326 0 0 1 0 3 HSP90B1 chr12:104341150 3'AG 104341150 Downstream 18bp
chr12 104341167 104341167 1 + G C LUSC 104341157 + 104341137 104341177 41 ACAGAAGACACAGAGCAAGACGAAGATGAAGAAATGGATGT ACAGAAGACACAGAGCAAGACGAAGATGAACAAATGGATGT < 41bp 1 0.534116523058723 1 0.163905620574951 experiment 0.931766953882553 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104341157 chr12:104341167 nonsynonymous SNV 0.046 1 31 hm5C_associated_SNPs_29326 0 0 1 0 3 HSP90B1 chr12:104341208 5'GT 104341208 Upstream 42bp
chr5 153760026 153760026 1 + G A LUSC 153760010 + 153759990 153760030 41 ATCTCTTGGCTTCTTCAGACCGCATTGCTCGGAACCGCAAG ATCTCTTGGCTTCTTCAGACCGCATTGCTCGGAACCACAAG < 41bp 1 0.177736261671748 1 0.175941705703735 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153760010 chr5:153760026 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_29329 0 0 1 0 1 GALNT10 chr5:153760008 3'AG 153760008 Downstream 19bp
chr5 153760026 153760026 1 + G A LUSC 153760024 + 153760004 153760044 41 TCAGACCGCATTGCTCGGAACCGCAAGACCATTGTGTGCCC TCAGACCGCATTGCTCGGAACCACAAGACCATTGTGTGCCC < 41bp 1 0.273217797313399 1 0.15230655670166 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153760024 chr5:153760026 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_29330 0 0 1 0 1 GALNT10 chr5:153760008 3'AG 153760008 Downstream 19bp
chr17 48434090 48434090 1 + C A LUSC 48434072 + 48434052 48434092 41 CTCACTGCTTACACAGCCTTCGCCCGCCTCAGCCTGCACCA CTCACTGCTTACACAGCCTTCGCCCGCCTCAGCCTGCAACA < 41bp 1 0.351145751685102 1 0.0713188052177429 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48434072 chr17:48434090 nonsynonymous SNV 0.754 0 39 hm5C_associated_SNPs_29333 0 0 0 0 1 XYLT2 chr17:48434134 5'GT 48434134 Upstream 45bp
chr17 48434090 48434090 1 + C A LUSC 48434109 + 48434089 48434129 41 ACCATGCCGCCACTGCTGCACCCCCAATGGGCACCCCACTC AACATGCCGCCACTGCTGCACCCCCAATGGGCACCCCACTC < 41bp 1 0.12632879234087 1 0.0447928309440613 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48434109 chr17:48434090 nonsynonymous SNV 0.754 0 2 hm5C_associated_SNPs_29334 0 0 0 0 1 XYLT2 chr17:48434134 5'GT 48434134 Upstream 45bp
chr2 98263887 98263887 1 + G C LUSC 98263871 + 98263851 98263891 41 GGAAGACCCTAATTTAGTCCCCTCCATCTCCAACAAGAGAA GGAAGACCCTAATTTAGTCCCCTCCATCTCCAACAACAGAA < 41bp 1 0.0431111888068695 1 0.0965458154678345 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COX5B ENSG00000135940 CDS Human protein_coding chr2:98263871 chr2:98263887 nonsynonymous SNV 0.803 4 37 hm5C_associated_SNPs_29335 0 0 1 0 2 COX5B chr2:98263807 3'AG 98263807 Downstream 81bp
chr2 98263887 98263887 1 + G C LUSC 98263871 + 98263851 98263891 41 GGAAGACCCTAATTTAGTCCCCTCCATCTCCAACAAGAGAA GGAAGACCCTAATTTAGTCCCCTCCATCTCCAACAACAGAA < 41bp 1 0.0431111888068695 1 0.0965458154678345 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COX5B ENSG00000135940 CDS Human protein_coding chr2:98263871 chr2:98263887 nonsynonymous SNV 0.803 4 37 hm5C_associated_SNPs_29335 0 0 1 0 2 COX5B chr2:98263906 5'GT 98263906 Upstream 20bp
chr2 98263887 98263887 1 + G C LUSC 98263872 + 98263852 98263892 41 GAAGACCCTAATTTAGTCCCCTCCATCTCCAACAAGAGAAT GAAGACCCTAATTTAGTCCCCTCCATCTCCAACAACAGAAT < 41bp 1 0.660740721559392 1 0.506196916103363 experiment 0.678518556881216 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COX5B ENSG00000135940 CDS Human protein_coding chr2:98263872 chr2:98263887 nonsynonymous SNV 0.803 4 36 hm5C_associated_SNPs_29336 0 0 1 0 2 COX5B chr2:98263807 3'AG 98263807 Downstream 81bp
chr2 98263887 98263887 1 + G C LUSC 98263872 + 98263852 98263892 41 GAAGACCCTAATTTAGTCCCCTCCATCTCCAACAAGAGAAT GAAGACCCTAATTTAGTCCCCTCCATCTCCAACAACAGAAT < 41bp 1 0.660740721559392 1 0.506196916103363 experiment 0.678518556881216 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COX5B ENSG00000135940 CDS Human protein_coding chr2:98263872 chr2:98263887 nonsynonymous SNV 0.803 4 36 hm5C_associated_SNPs_29336 0 0 1 0 2 COX5B chr2:98263906 5'GT 98263906 Upstream 20bp
chr1 182827347 182827347 1 + G T LUSC 182827338 + 182827318 182827358 41 CCATCTTGGAGTGGTTGAAGCTTACTCCGGACTTACAAAGA CCATCTTGGAGTGGTTGAAGCTTACTCCGTACTTACAAAGA < 41bp 1 0.19021455425262 1 0.16669362783432 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182827338 chr1:182827347 nonsynonymous SNV 0.981 4 30 hm5C_associated_SNPs_29337 0 0 1 0 1 DHX9 chr1:182827375 5'GT 182827375 Upstream 29bp
chr1 182827347 182827347 1 + G T LUSC 182827342 + 182827322 182827362 41 CTTGGAGTGGTTGAAGCTTACTCCGGACTTACAAAGAAGAA CTTGGAGTGGTTGAAGCTTACTCCGTACTTACAAAGAAGAA < 41bp 1 0.718696672645699 1 0.451028943061829 experiment 0.562606654708602 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182827342 chr1:182827347 nonsynonymous SNV 0.981 4 26 hm5C_associated_SNPs_29338 0 0 1 0 1 DHX9 chr1:182827375 5'GT 182827375 Upstream 29bp
chr1 182827347 182827347 1 + G T LUSC 182827349 + 182827329 182827369 41 TGGTTGAAGCTTACTCCGGACTTACAAAGAAGAAGGAAGGA TGGTTGAAGCTTACTCCGTACTTACAAAGAAGAAGGAAGGA < 41bp 1 0.0735578744600236 1 0.118629425764084 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182827349 chr1:182827347 nonsynonymous SNV 0.981 4 19 hm5C_associated_SNPs_29339 0 0 1 0 1 DHX9 chr1:182827375 5'GT 182827375 Upstream 29bp
chr20 35857089 35857089 1 + A T LUSC 35857080 + 35857060 35857100 41 GATTGAATTTGACTCTGCCTCTGGCACCTACACTCTCTACT GATTGAATTTGACTCTGCCTCTGGCACCTTCACTCTCTACT < 41bp 1 0.408428720943085 1 0.58711564540863 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35857080 chr20:35857089 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_29345 0 0 1 0 1 RPN2 chr20:35857147 5'GT 35857147 Upstream 59bp
chr7 100334904 100334904 1 + G T LUSC 100334885 + 100334865 100334905 41 GTCCCCTTATCCTCTTGCAGCTGATGTTTGAGGGAACACGG GTCCCCTTATCCTCTTGCAGCTGATGTTTGAGGGAACACTG < 41bp 1 0.186106803694093 1 0.0793145596981049 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZAN ENSG00000146839 CDS Human protein_coding chr7:100334885 chr7:100334904 nonsynonymous SNV 0.442 2 40 hm5C_associated_SNPs_29346 0 0 0 0 2 ZAN chr7:100334885 3'AG 100334885 Downstream 20bp
chr7 100334904 100334904 1 + G T LUSC 100334885 + 100334865 100334905 41 GTCCCCTTATCCTCTTGCAGCTGATGTTTGAGGGAACACGG GTCCCCTTATCCTCTTGCAGCTGATGTTTGAGGGAACACTG < 41bp 1 0.186106803694093 1 0.0793145596981049 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZAN ENSG00000146839 CDS Human protein_coding chr7:100334885 chr7:100334904 nonsynonymous SNV 0.442 2 40 hm5C_associated_SNPs_29346 0 0 0 0 2 ZAN chr7:100334972 5'GT 100334972 Upstream 69bp
chr7 45688315 45688315 1 + G A LUSC 45688321 + 45688301 45688341 41 GGACTGCTACTACTGCGTGTCGGGCCTCACCCAGCCCAAGA GGACTGCTACTACTACGTGTCGGGCCTCACCCAGCCCAAGA < 41bp 1 0.46334057415026 1 0.788561820983887 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45688321 chr7:45688315 nonsynonymous SNV 0.837 5 15 hm5C_associated_SNPs_29348 0 0 1 0 2 ADCY1 chr7:45688269 3'AG 45688269 Downstream 47bp
chr7 45688315 45688315 1 + G A LUSC 45688321 + 45688301 45688341 41 GGACTGCTACTACTGCGTGTCGGGCCTCACCCAGCCCAAGA GGACTGCTACTACTACGTGTCGGGCCTCACCCAGCCCAAGA < 41bp 1 0.46334057415026 1 0.788561820983887 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45688321 chr7:45688315 nonsynonymous SNV 0.837 5 15 hm5C_associated_SNPs_29348 0 0 1 0 2 ADCY1 chr7:45688396 5'GT 45688396 Upstream 82bp
chr19 39964942 39964942 1 + G T LUSC 39964940 + 39964920 39964960 41 GGTTCCTACCAGCCCAGCCCCAGCCCCCAGAGCTACCACCA GGTTCCTACCAGCCCAGCCCCATCCCCCAGAGCTACCACCA < 41bp 1 0.134661803806061 1 0.194240748882294 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39964940 chr19:39964942 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_29350 0 0 1 0 1 SUPT5H chr19:39964874 3'AG 39964874 Downstream 69bp
chr17 15907564 15907564 1 + C G LUSC 15907552 + 15907532 15907572 41 TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGCGCAGA TGAAATTTCCCTAAAGCTGGCCAGTATCTATGGTGCGCAGA < 41bp 1 0.128770825298269 1 0.0839388370513916 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15907552 chr17:15907564 nonsynonymous SNV 0.999 2 33 hm5C_associated_SNPs_29351 0 0 1 2 2 TTC19 chr17:15907515 3'AG 15907515 Downstream 50bp
chr17 15907564 15907564 1 + C G LUSC 15907552 + 15907532 15907572 41 TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGCGCAGA TGAAATTTCCCTAAAGCTGGCCAGTATCTATGGTGCGCAGA < 41bp 1 0.128770825298269 1 0.0839388370513916 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15907552 chr17:15907564 nonsynonymous SNV 0.999 2 33 hm5C_associated_SNPs_29351 0 0 1 2 2 TTC19 chr17:15907576 5'GT 15907576 Upstream 13bp
chr12 104378655 104378655 1 + C T LUSC 104378675 + 104378655 104378695 41 CGTTCAAGAGGTGCAATATACATTTGACCTACAGCTTGCCC TGTTCAAGAGGTGCAATATACATTTGACCTACAGCTTGCCC < 41bp 1 0.23656302403247 1 0.036694198846817 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TDG ENSG00000139372 CDS Human protein_coding chr12:104378675 chr12:104378655 synonymous SNV . 0 1 hm5C_associated_SNPs_29352 0 0 1 0 1 TDG chr12:104378698 5'GT 104378698 Upstream 44bp
chr8 42927429 42927429 1 + G T LUSC 42927423 + 42927403 42927443 41 GATGCAAAGAATTATCATGCCTGGCAGCATCGACAATGGGT GATGCAAAGAATTATCATGCCTGGCATCATCGACAATGGGT < 41bp 1 0.49619294763321 1 0.0448567867279053 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FNTA ENSG00000168522;ENSG00000254673 CDS Human other chr8:42927423 chr8:42927429 nonsynonymous SNV 0.995 4 27 hm5C_associated_SNPs_29353 0 0 0 0 1 FNTA chr8:42927450 5'GT 42927450 Upstream 22bp
chr11 8016879 8016879 1 + G C LUSC 8016893 + 8016873 8016913 41 GTTCCCGATGACTTTGAGACCATGCTCAACAGCAACATCAA GTTCCCCATGACTTTGAGACCATGCTCAACAGCAACATCAA < 41bp 1 0.165772812616252 1 0.211518108844757 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF3F ENSG00000175390 CDS Human protein_coding chr11:8016893 chr11:8016879 nonsynonymous SNV 0.921 4 7 hm5C_associated_SNPs_29354 0 0 1 0 2 EIF3F chr11:8016801 3'AG 8016801 Downstream 79bp
chr11 8016879 8016879 1 + G C LUSC 8016893 + 8016873 8016913 41 GTTCCCGATGACTTTGAGACCATGCTCAACAGCAACATCAA GTTCCCCATGACTTTGAGACCATGCTCAACAGCAACATCAA < 41bp 1 0.165772812616252 1 0.211518108844757 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF3F ENSG00000175390 CDS Human protein_coding chr11:8016893 chr11:8016879 nonsynonymous SNV 0.921 4 7 hm5C_associated_SNPs_29354 0 0 1 0 2 EIF3F chr11:8016914 5'GT 8016914 Upstream 36bp
chr14 97018866 97018866 1 + A C LUSC 97018858 + 97018838 97018878 41 TTGACAGCTCTCAATGACAGCAGCCTCGACTTGTCTATGGA TTGACAGCTCTCAATGACAGCAGCCTCGCCTTGTCTATGGA < 41bp 1 0.2441048058274 1 0.100721091032028 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97018858 chr14:97018866 nonsynonymous SNV 0.998 2 29 hm5C_associated_SNPs_29355 0 0 1 0 2 PAPOLA chr14:97018817 3'AG 97018817 Downstream 50bp
chr14 97018866 97018866 1 + A C LUSC 97018858 + 97018838 97018878 41 TTGACAGCTCTCAATGACAGCAGCCTCGACTTGTCTATGGA TTGACAGCTCTCAATGACAGCAGCCTCGCCTTGTCTATGGA < 41bp 1 0.2441048058274 1 0.100721091032028 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97018858 chr14:97018866 nonsynonymous SNV 0.998 2 29 hm5C_associated_SNPs_29355 0 0 1 0 2 PAPOLA chr14:97018959 5'GT 97018959 Upstream 94bp
chr5 68524045 68524045 1 + C A LUSC 68524030 + 68524010 68524050 41 TTTTTTTTTAATTTCAGTATCAGAAGCTTTGAGATCAGCAG TTTTTTTTTAATTTCAGTATCAGAAGCTTTGAGATAAGCAG < 41bp 1 0.753946562462758 1 0.524089276790619 experiment 0.492106875074484 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRPS36 ENSG00000134056 CDS Human protein_coding chr5:68524030 chr5:68524045 stopgain 0.996 0 36 hm5C_associated_SNPs_29356 0 0 1 1 1 MRPS36 chr5:68524027 3'AG 68524027 Downstream 19bp
chr2 74720131 74720131 1 + C T LUSC 74720147 + 74720127 74720167 41 CCCTCAGGCCTACCTTCCCTCAGGTGCCCTCGAAGCACTGC CCCTTAGGCCTACCTTCCCTCAGGTGCCCTCGAAGCACTGC < 41bp 1 0.771675479705598 1 0.837131023406982 experiment 0.456649040588804 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TTC31 ENSG00000115282 CDS Human protein_coding chr2:74720147 chr2:74720131 nonsynonymous SNV 0.019 1 5 hm5C_associated_SNPs_29357 0 0 1 0 1 TTC31 chr2:74720049 3'AG 74720049 Downstream 83bp
chr17 76167718 76167718 1 + C T LUSC 76167712 + 76167692 76167732 41 GCAGCCATCACCTTCAGCTTCTTTTCCATCTTCTCCTGGGT GCAGCCATCACCTTCAGCTTCTTTTCTATCTTCTCCTGGGT < 41bp 1 0.0692420339943767 1 0.0213637948036194 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167712 chr17:76167718 synonymous SNV . 0 27 hm5C_associated_SNPs_29359 0 0 1 0 1 SYNGR2 chr17:76167730 5'GT 76167730 Upstream 13bp
chr4 15008952 15008952 1 + G A LUSC 15008941 + 15008921 15008961 41 TTCCCTAGCCTCTTCTGAAACAGTCTCCCTGGAGCAACCAT TTCCCTAGCCTCTTCTGAAACAGTCTCCCTGAAGCAACCAT < 41bp 1 0.208481644684275 1 0.0763408541679382 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15008941 chr4:15008952 stopgain 1.000 1 32 hm5C_associated_SNPs_29360 0 0 0 0 1 CPEB2 chr4:15008929 3'AG 15008929 Downstream 24bp
chr17 78079644 78079644 1 + G A LUSC 78079642 + 78079622 78079662 41 ACTCTACAGCGTGGAGTTCTCCGAGGAGCCCTTCGGGGTGA ACTCTACAGCGTGGAGTTCTCCAAGGAGCCCTTCGGGGTGA < 41bp 1 0.694855910018285 1 0.790667831897736 experiment 0.61028817996343 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GAA ENSG00000171298 CDS Human protein_coding chr17:78079642 chr17:78079644 nonsynonymous SNV 0.887 1 23 hm5C_associated_SNPs_29361 0 0 1 0 2 GAA chr17:78079548 3'AG 78079548 Downstream 97bp
chr17 78079644 78079644 1 + G A LUSC 78079642 + 78079622 78079662 41 ACTCTACAGCGTGGAGTTCTCCGAGGAGCCCTTCGGGGTGA ACTCTACAGCGTGGAGTTCTCCAAGGAGCCCTTCGGGGTGA < 41bp 1 0.694855910018285 1 0.790667831897736 experiment 0.61028817996343 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GAA ENSG00000171298 CDS Human protein_coding chr17:78079642 chr17:78079644 nonsynonymous SNV 0.887 1 23 hm5C_associated_SNPs_29361 0 0 1 0 2 GAA chr17:78079693 5'GT 78079693 Upstream 50bp
chr3 138119380 138119380 1 + C T LUSC 138119379 + 138119359 138119399 41 TGAGCTTTGCCTTCCAGATTCCGTACATAGAAACCAGTGCC TGAGCTTTGCCTTCCAGATTCTGTACATAGAAACCAGTGCC < 41bp 1 0.444172164891516 1 0.476340740919113 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRAS ENSG00000158186 CDS Human protein_coding chr3:138119379 chr3:138119380 nonsynonymous SNV 0.990 1 22 hm5C_associated_SNPs_29363 0 0 0 0 2 MRAS chr3:138119376 3'AG 138119376 Downstream 5bp
chr3 138119380 138119380 1 + C T LUSC 138119379 + 138119359 138119399 41 TGAGCTTTGCCTTCCAGATTCCGTACATAGAAACCAGTGCC TGAGCTTTGCCTTCCAGATTCTGTACATAGAAACCAGTGCC < 41bp 1 0.444172164891516 1 0.476340740919113 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRAS ENSG00000158186 CDS Human protein_coding chr3:138119379 chr3:138119380 nonsynonymous SNV 0.990 1 22 hm5C_associated_SNPs_29363 0 0 0 0 2 MRAS chr3:138119455 5'GT 138119455 Upstream 76bp
chr2 170471233 170471233 1 + A C LUSC 170471216 + 170471196 170471236 41 GGATACTCAGTTGTGGAGAGCTGATTCCCAAATCTAAAGGT GGATACTCAGTTGTGGAGAGCTGATTCCCAAATCTAACGGT < 41bp 1 0.382987943879068 1 0.124880731105804 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIG ENSG00000138398 CDS Human protein_coding chr2:170471216 chr2:170471233 nonsynonymous SNV 0.997 3 38 hm5C_associated_SNPs_29364 0 0 1 0 1 PPIG chr2:170471234 5'GT 170471234 Upstream 2bp
chr19 10823291 10823291 1 + C T LUSC 10823292 + 10823272 10823312 41 ATGTTCGACTGCGTCTTCCCCACACGGACAGCGGTGAGGCT ATGTTCGACTGCGTCTTCCTCACACGGACAGCGGTGAGGCT < 41bp 1 0.301784510056911 1 0.232902526855469 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10823292 chr19:10823291 nonsynonymous SNV 0.913 3 20 hm5C_associated_SNPs_29365 0 0 1 0 2 QTRT1 chr19:10823229 3'AG 10823229 Downstream 63bp
chr19 10823291 10823291 1 + C T LUSC 10823292 + 10823272 10823312 41 ATGTTCGACTGCGTCTTCCCCACACGGACAGCGGTGAGGCT ATGTTCGACTGCGTCTTCCTCACACGGACAGCGGTGAGGCT < 41bp 1 0.301784510056911 1 0.232902526855469 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10823292 chr19:10823291 nonsynonymous SNV 0.913 3 20 hm5C_associated_SNPs_29365 0 0 1 0 2 QTRT1 chr19:10823304 5'GT 10823304 Upstream 14bp
chr2 54858661 54858661 1 + G A LUSC 54858649 + 54858629 54858669 41 ACTGGATGGAACGAGCTCCACAAGATGTGGGAGAACAGACA ACTGGATGGAACGAGCTCCACAAGATGTGGGAAAACAGACA < 41bp 1 0.652574668522958 1 0.636572003364563 experiment 0.694850662954084 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54858649 chr2:54858661 synonymous SNV . 0 33 hm5C_associated_SNPs_29366 0 0 1 0 1 SPTBN1 chr2:54858748 5'GT 54858748 Upstream 88bp
chr2 54858661 54858661 1 + G A LUSC 54858664 + 54858644 54858684 41 CTCCACAAGATGTGGGAGAACAGACAAAATCTCCTATCCCA CTCCACAAGATGTGGGAAAACAGACAAAATCTCCTATCCCA < 41bp 1 0.382028071836431 1 0.571363568305969 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54858664 chr2:54858661 synonymous SNV . 0 18 hm5C_associated_SNPs_29367 0 0 1 0 1 SPTBN1 chr2:54858748 5'GT 54858748 Upstream 88bp
chr5 154169899 154169899 1 + G A LUSC 154169887 + 154169867 154169907 41 CCCTTCTTGTTCCCACAGAACACTCTGCTCCAGCCAAGGTG CCCTTCTTGTTCCCACAGAACACTCTGCTCCAACCAAGGTG < 41bp 1 0.160417067271115 1 0.0468122065067291 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154169887 chr5:154169899 nonsynonymous SNV 0.998 1 33 hm5C_associated_SNPs_29368 0 0 1 0 2 LARP1 chr5:154169885 3'AG 154169885 Downstream 15bp
chr5 154169899 154169899 1 + G A LUSC 154169887 + 154169867 154169907 41 CCCTTCTTGTTCCCACAGAACACTCTGCTCCAGCCAAGGTG CCCTTCTTGTTCCCACAGAACACTCTGCTCCAACCAAGGTG < 41bp 1 0.160417067271115 1 0.0468122065067291 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154169887 chr5:154169899 nonsynonymous SNV 0.998 1 33 hm5C_associated_SNPs_29368 0 0 1 0 2 LARP1 chr5:154169946 5'GT 154169946 Upstream 48bp
chr10 118314758 118314758 1 + A T LUSC 118314745 + 118314725 118314765 41 CCTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGT CCTGAATTAGTCCGATTGGACCCCAGCGATGCCTAATTTGT < 41bp 1 0.573882797584174 1 0.10907319188118 experiment 0.852234404831652 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314745 chr10:118314758 stopgain 0.978 0 34 hm5C_associated_SNPs_29369 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 52bp
chr10 118314758 118314758 1 + A T LUSC 118314746 + 118314726 118314766 41 CTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTG CTGAATTAGTCCGATTGGACCCCAGCGATGCCTAATTTGTG < 41bp 1 0.172925573986854 1 0.107270181179047 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314746 chr10:118314758 stopgain 0.978 0 33 hm5C_associated_SNPs_29370 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 52bp
chr10 118314758 118314758 1 + A T LUSC 118314747 + 118314727 118314767 41 TGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGG TGAATTAGTCCGATTGGACCCCAGCGATGCCTAATTTGTGG < 41bp 1 0.329525312201879 1 0.346471190452576 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314747 chr10:118314758 stopgain 0.978 0 32 hm5C_associated_SNPs_29371 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 52bp
chr10 118314758 118314758 1 + A T LUSC 118314748 + 118314728 118314768 41 GAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGA GAATTAGTCCGATTGGACCCCAGCGATGCCTAATTTGTGGA < 41bp 1 0.637286032263192 1 0.35175496339798 experiment 0.725427935473616 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314748 chr10:118314758 stopgain 0.978 0 31 hm5C_associated_SNPs_29372 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 52bp
chr10 118314758 118314758 1 + A T LUSC 118314751 + 118314731 118314771 41 TTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGATGT TTAGTCCGATTGGACCCCAGCGATGCCTAATTTGTGGATGT < 41bp 1 0.294180418210421 1 0.140796333551407 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314751 chr10:118314758 stopgain 0.978 0 28 hm5C_associated_SNPs_29373 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 52bp
chr10 118314758 118314758 1 + A T LUSC 118314756 + 118314736 118314776 41 CCGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTC CCGATTGGACCCCAGCGATGCCTAATTTGTGGATGTAATTC < 41bp 1 0.181062009463571 1 0.0283975601196289 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314756 chr10:118314758 stopgain 0.978 0 23 hm5C_associated_SNPs_29374 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 52bp
chr10 118314758 118314758 1 + A T LUSC 118314757 + 118314737 118314777 41 CGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTCA CGATTGGACCCCAGCGATGCCTAATTTGTGGATGTAATTCA < 41bp 1 0.386246798650815 1 0.072918564081192 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314757 chr10:118314758 stopgain 0.978 0 22 hm5C_associated_SNPs_29375 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 52bp
chr10 118314758 118314758 1 + A T LUSC 118314776 + 118314756 118314796 41 CCAAATTTGTGGATGTAATTCACACGGATGGTGCCCCCATA CCTAATTTGTGGATGTAATTCACACGGATGGTGCCCCCATA < 41bp 1 0.687128051416977 1 0.142698019742966 experiment 0.625743897166046 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314776 chr10:118314758 stopgain 0.978 0 3 hm5C_associated_SNPs_29376 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 52bp
chr8 77619806 77619806 1 + C A LUSC 77619825 + 77619805 77619845 41 TCCGGCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCC TACGGCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCC < 41bp 1 0.181842166217076 1 0.500535845756531 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77619825 chr8:77619806 synonymous SNV . 0 2 hm5C_associated_SNPs_29377 0 0 1 0 1 ZFHX4 chr8:77619781 3'AG 77619781 Downstream 26bp
chr2 27440793 27440793 1 + C T LUSC 27440789 + 27440769 27440809 41 ACCCCGAGGCCCTCACCGATCCCTCCTACAAGGCACAGATC ACCCCGAGGCCCTCACCGATCCCTTCTACAAGGCACAGATC < 41bp 1 0.0601781625925516 1 0.0549103617668152 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27440789 chr2:27440793 nonsynonymous SNV 0.984 5 25 hm5C_associated_SNPs_29378 0 0 1 0 1 CAD chr2:27440884 5'GT 27440884 Upstream 92bp
chr4 8294050 8294050 1 + C A LUSC 8294067 + 8294047 8294087 41 GTACGGGAACTCCGGGGGACCACTGGTGAACCTGGTAAGTG GTAAGGGAACTCCGGGGGACCACTGGTGAACCTGGTAAGTG < 41bp 1 0.374037229437003 1 0.353901028633118 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8294067 chr4:8294050 stopgain 0.972 1 4 hm5C_associated_SNPs_29379 0 0 0 0 2 HTRA3 chr4:8294048 3'AG 8294048 Downstream 3bp
chr4 8294050 8294050 1 + C A LUSC 8294067 + 8294047 8294087 41 GTACGGGAACTCCGGGGGACCACTGGTGAACCTGGTAAGTG GTAAGGGAACTCCGGGGGACCACTGGTGAACCTGGTAAGTG < 41bp 1 0.374037229437003 1 0.353901028633118 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8294067 chr4:8294050 stopgain 0.972 1 4 hm5C_associated_SNPs_29379 0 0 0 0 2 HTRA3 chr4:8294080 5'GT 8294080 Upstream 31bp
chr8 99168342 99168342 1 + T A LUSC 99168348 + 99168328 99168368 41 CTTTCTGCTGTCCCTGGGAGCAGTTAACTCAAGACTGGGAG CTTTCTGCTGTCCCAGGGAGCAGTTAACTCAAGACTGGGAG < 41bp 1 0.205571145846391 1 0.430422961711884 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POP1 ENSG00000104356 CDS Human protein_coding chr8:99168348 chr8:99168342 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_29381 0 0 1 0 1 POP1 chr8:99168278 3'AG 99168278 Downstream 65bp
chr2 220290711 220290711 1 + A G LUSC 220290716 + 220290696 220290736 41 AGCATGAAGTGCTCTAAAGACAGAGACCCTCTGCCACCAGA AGCATGAAGTGCTCTGAAGACAGAGACCCTCTGCCACCAGA < 41bp 1 0.772446462006841 1 0.727000594139099 experiment 0.455107075986318 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control DES ENSG00000175084 CDS Human protein_coding chr2:220290716 chr2:220290711 synonymous SNV . 0 16 hm5C_associated_SNPs_29383 0 0 0 0 1 DES chr2:220290671 3'AG 220290671 Downstream 41bp
chr20 30115371 30115371 1 + T A LUSC 30115370 + 30115350 30115390 41 AGCTGCACACTCTTGGGGCTCTACCTCTTTTTCAAAGTAAG AGCTGCACACTCTTGGGGCTCAACCTCTTTTTCAAAGTAAG < 41bp 1 0.100060388286922 1 0.142320781946182 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HM13 ENSG00000101294 CDS Human protein_coding chr20:30115370 chr20:30115371 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_29384 0 0 1 0 2 HM13 chr20:30115287 3'AG 30115287 Downstream 85bp
chr20 30115371 30115371 1 + T A LUSC 30115370 + 30115350 30115390 41 AGCTGCACACTCTTGGGGCTCTACCTCTTTTTCAAAGTAAG AGCTGCACACTCTTGGGGCTCAACCTCTTTTTCAAAGTAAG < 41bp 1 0.100060388286922 1 0.142320781946182 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HM13 ENSG00000101294 CDS Human protein_coding chr20:30115370 chr20:30115371 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_29384 0 0 1 0 2 HM13 chr20:30115385 5'GT 30115385 Upstream 15bp
chr10 121677437 121677437 1 + C T LUSC 121677432 + 121677412 121677452 41 CTAGATATTTTATTTTATAACAGCCCCACCTACTGTCAGAC CTAGATATTTTATTTTATAACAGCCTCACCTACTGTCAGAC < 41bp 1 0.282951475555658 1 0.121571063995361 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC23IP ENSG00000107651 CDS Human protein_coding chr10:121677432 chr10:121677437 nonsynonymous SNV 0.992 4 26 hm5C_associated_SNPs_29385 0 0 1 0 1 SEC23IP chr10:121677348 3'AG 121677348 Downstream 90bp
chr14 24617669 24617669 1 + G T LUSC 24617684 + 24617664 24617704 41 CTGGGGAGCCCAGCCTAACTCAAGTAAGTTTGAGGACCCCC CTGGGTAGCCCAGCCTAACTCAAGTAAGTTTGAGGACCCCC < 41bp 1 0.382619030048725 1 0.476999461650848 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617684 chr14:24617669 stopgain 0.016 0 6 hm5C_associated_SNPs_29386 0 0 1 0 1 RNF31 chr14:24617686 5'GT 24617686 Upstream 18bp
chr6 30856996 30856996 1 + G T LUSC 30857005 + 30856985 30857025 41 GAGCAGTGACGGGGATGGGGCCTGGTGCCCCGCAGGGTCGG GAGCAGTGACGTGGATGGGGCCTGGTGCCCCGCAGGGTCGG < 41bp 1 0.25636101363635 1 0.217724978923798 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDR1 ENSG00000204580 CDS Human protein_coding chr6:30857005 chr6:30856996 nonsynonymous SNV 0.996 4 12 hm5C_associated_SNPs_29387 0 0 1 0 1 DDR1 chr6:30856979 3'AG 30856979 Downstream 18bp
chr4 184182146 184182146 1 + G C LUSC 184182141 + 184182121 184182161 41 AGTCGGGGCTCTCTGAACACCTCCAGCAGAGGGTCACTCAA AGTCGGGGCTCTCTGAACACCTCCACCAGAGGGTCACTCAA < 41bp 1 0.776186633788096 1 0.98058295249939 experiment 0.447626732423808 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WWC2 ENSG00000151718 CDS Human protein_coding chr4:184182141 chr4:184182146 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_29388 0 0 1 0 1 WWC2 chr4:184182063 3'AG 184182063 Downstream 84bp
chr9 130569530 130569530 1 + A G LUSC 130569510 + 130569490 130569530 41 TGGCAGCTGTGTCTCCATGCCCCCCTACTTCCGCTTCCTGA TGGCAGCTGTGTCTCCATGCCCCCCTACTTCCGCTTCCTGG < 41bp 1 0.0930896073483465 1 0.0605399906635284 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FPGS ENSG00000136877 CDS Human protein_coding chr9:130569510 chr9:130569530 nonsynonymous SNV 0.987 3 41 hm5C_associated_SNPs_29389 0 0 0 0 2 FPGS chr9:130569488 3'AG 130569488 Downstream 43bp
chr9 130569530 130569530 1 + A G LUSC 130569510 + 130569490 130569530 41 TGGCAGCTGTGTCTCCATGCCCCCCTACTTCCGCTTCCTGA TGGCAGCTGTGTCTCCATGCCCCCCTACTTCCGCTTCCTGG < 41bp 1 0.0930896073483465 1 0.0605399906635284 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FPGS ENSG00000136877 CDS Human protein_coding chr9:130569510 chr9:130569530 nonsynonymous SNV 0.987 3 41 hm5C_associated_SNPs_29389 0 0 0 0 2 FPGS chr9:130569565 5'GT 130569565 Upstream 36bp
chr5 128440953 128440953 1 + C G LUSC 128440946 + 128440926 128440966 41 TACCCTAAAGGTCTTGGGAGCACGGTTCAAGAAATTGATTT TACCCTAAAGGTCTTGGGAGCACGGTTGAAGAAATTGATTT < 41bp 1 0.651608802107684 1 0.480006754398346 experiment 0.696782395784633 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128440946 chr5:128440953 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_29390 0 0 1 0 1 ISOC1 chr5:128440878 3'AG 128440878 Downstream 76bp
chr12 56214138 56214138 1 + C G LUSC 56214120 + 56214100 56214140 41 CAGCCTCATTGCTAAGTGTACTGCTGCCGAAGTTGCCCCAG CAGCCTCATTGCTAAGTGTACTGCTGCCGAAGTTGCCCGAG < 41bp 1 0.66523396083598 1 0.218686074018478 experiment 0.669532078328041 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ORMDL2 ENSG00000123353;ENSG00000257390 CDS Human protein_coding chr12:56214120 chr12:56214138 nonsynonymous SNV 0.997 1 39 hm5C_associated_SNPs_29391 0 0 1 0 1 ORMDL2 chr12:56214044 3'AG 56214044 Downstream 95bp
chr12 56214138 56214138 1 + C G LUSC 56214123 + 56214103 56214143 41 CCTCATTGCTAAGTGTACTGCTGCCGAAGTTGCCCCAGTTC CCTCATTGCTAAGTGTACTGCTGCCGAAGTTGCCCGAGTTC < 41bp 1 0.577577894422615 1 0.379956960678101 experiment 0.844844211154769 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ORMDL2 ENSG00000123353;ENSG00000257390 CDS Human protein_coding chr12:56214123 chr12:56214138 nonsynonymous SNV 0.997 1 36 hm5C_associated_SNPs_29392 0 0 1 0 1 ORMDL2 chr12:56214044 3'AG 56214044 Downstream 95bp
chr18 19209068 19209068 1 + G A LUSC 19209061 + 19209041 19209081 41 GAAGAGGAAGAGGAAGAGGACGTGGCCGTGGCAGAGGAAGA GAAGAGGAAGAGGAAGAGGACGTGGCCATGGCAGAGGAAGA < 41bp 1 0.584758855772229 1 0.488729447126389 experiment 0.830482288455542 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRPD1 ENSG00000167088 CDS Human protein_coding chr18:19209061 chr18:19209068 nonsynonymous SNV 0.998 4 28 hm5C_associated_SNPs_29393 0 0 1 0 1 SNRPD1 chr18:19209023 3'AG 19209023 Downstream 46bp
chr18 19209068 19209068 1 + G A LUSC 19209067 + 19209047 19209087 41 GAAGAGGAAGAGGACGTGGCCGTGGCAGAGGAAGAGGGGGT GAAGAGGAAGAGGACGTGGCCATGGCAGAGGAAGAGGGGGT < 41bp 1 0.673725773370057 1 0.220461755990982 experiment 0.652548453259885 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRPD1 ENSG00000167088 CDS Human protein_coding chr18:19209067 chr18:19209068 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_29394 0 0 1 0 1 SNRPD1 chr18:19209023 3'AG 19209023 Downstream 46bp
chr14 64676719 64676719 1 + C T LUSC 64676732 + 64676712 64676752 41 AGCAGTACCGGCGGCTGGCCCGGGAGAACCGCACAGACACG AGCAGTATCGGCGGCTGGCCCGGGAGAACCGCACAGACACG < 41bp 1 0.611473640948953 1 0.937340021133423 experiment 0.777052718102095 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64676732 chr14:64676719 synonymous SNV . 0 8 hm5C_associated_SNPs_29395 0 0 0 0 2 SYNE2 chr14:64676660 3'AG 64676660 Downstream 60bp
chr14 64676719 64676719 1 + C T LUSC 64676732 + 64676712 64676752 41 AGCAGTACCGGCGGCTGGCCCGGGAGAACCGCACAGACACG AGCAGTATCGGCGGCTGGCCCGGGAGAACCGCACAGACACG < 41bp 1 0.611473640948953 1 0.937340021133423 experiment 0.777052718102095 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64676732 chr14:64676719 synonymous SNV . 0 8 hm5C_associated_SNPs_29395 0 0 0 0 2 SYNE2 chr14:64676669 3'AG 64676669 Downstream 51bp
chr6 26093173 26093173 1 + C T LUSC 26093171 + 26093151 26093191 41 GCACCCAGGCCTGGATCAGCCCCTCATTGTGATCTGGGGTA GCACCCAGGCCTGGATCAGCCCTTCATTGTGATCTGGGGTA < 41bp 1 0.0687659062218548 1 0.0623259544372559 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26093171 chr6:26093173 nonsynonymous SNV 0.138 3 23 hm5C_associated_SNPs_29396 0 0 1 0 1 HFE chr6:26093188 5'GT 26093188 Upstream 16bp
chr19 42796597 42796597 1 + T G LUSC 42796582 + 42796562 42796602 41 TAGGCTTCACCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTG TAGGCTTCACCTCGCTGGGGCCCAGCGGCCCCGCCGTCGTG < 41bp 1 0.0667687728869934 1 0.139636129140854 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796582 chr19:42796597 nonsynonymous SNV 0.961 2 36 hm5C_associated_SNPs_29404 0 0 0 0 1 CIC chr19:42796618 5'GT 42796618 Upstream 22bp
chr19 42796597 42796597 1 + T G LUSC 42796583 + 42796563 42796603 41 AGGCTTCACCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGC AGGCTTCACCTCGCTGGGGCCCAGCGGCCCCGCCGTCGTGC < 41bp 1 0.154327542355276 1 0.276813805103302 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796583 chr19:42796597 nonsynonymous SNV 0.961 2 35 hm5C_associated_SNPs_29405 0 0 0 0 1 CIC chr19:42796618 5'GT 42796618 Upstream 22bp
chr19 42796597 42796597 1 + T G LUSC 42796590 + 42796570 42796610 41 ACCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCT ACCTCGCTGGGGCCCAGCGGCCCCGCCGTCGTGCAGCCCCT < 41bp 1 0.192735971436652 1 0.151917964220047 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796590 chr19:42796597 nonsynonymous SNV 0.961 2 28 hm5C_associated_SNPs_29406 0 0 0 0 1 CIC chr19:42796618 5'GT 42796618 Upstream 22bp
chr19 42796597 42796597 1 + T G LUSC 42796591 + 42796571 42796611 41 CCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCTG CCTCGCTGGGGCCCAGCGGCCCCGCCGTCGTGCAGCCCCTG < 41bp 1 0.190121717370178 1 0.0673854053020477 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796591 chr19:42796597 nonsynonymous SNV 0.961 2 27 hm5C_associated_SNPs_29407 0 0 0 0 1 CIC chr19:42796618 5'GT 42796618 Upstream 22bp
chr19 42796597 42796597 1 + T G LUSC 42796592 + 42796572 42796612 41 CTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCTGC CTCGCTGGGGCCCAGCGGCCCCGCCGTCGTGCAGCCCCTGC < 41bp 1 0.185349993379686 1 0.144144743680954 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796592 chr19:42796597 nonsynonymous SNV 0.961 2 26 hm5C_associated_SNPs_29408 0 0 0 0 1 CIC chr19:42796618 5'GT 42796618 Upstream 22bp
chr19 42796597 42796597 1 + T G LUSC 42796593 + 42796573 42796613 41 TCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCTGCT TCGCTGGGGCCCAGCGGCCCCGCCGTCGTGCAGCCCCTGCT < 41bp 1 0.539332298596778 1 0.425494194030762 experiment 0.921335402806444 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796593 chr19:42796597 nonsynonymous SNV 0.961 2 25 hm5C_associated_SNPs_29409 0 0 0 0 1 CIC chr19:42796618 5'GT 42796618 Upstream 22bp
chr2 99162464 99162464 1 + G C LUSC 99162451 + 99162431 99162471 41 GGGCCCTCGTTTAAAGCAAGCAGTTTGAAAGCAGATAAAAA GGGCCCTCGTTTAAAGCAAGCAGTTTGAAAGCACATAAAAA < 41bp 1 0.046872087977702 1 0.134787946939468 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99162451 chr2:99162464 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_29411 0 0 0 0 2 INPP4A chr2:99162432 3'AG 99162432 Downstream 33bp
chr2 99162464 99162464 1 + G C LUSC 99162451 + 99162431 99162471 41 GGGCCCTCGTTTAAAGCAAGCAGTTTGAAAGCAGATAAAAA GGGCCCTCGTTTAAAGCAAGCAGTTTGAAAGCACATAAAAA < 41bp 1 0.046872087977702 1 0.134787946939468 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99162451 chr2:99162464 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_29411 0 0 0 0 2 INPP4A chr2:99162536 5'GT 99162536 Upstream 73bp
chr7 73944165 73944165 1 + T C LUSC 73944163 + 73944143 73944183 41 GGGCATCCCGGACAAGATCCCCTTCAAGCGCCCCTGCACTT GGGCATCCCGGACAAGATCCCCCTCAAGCGCCCCTGCACTT < 41bp 1 0.071055791235889 1 0.197008967399597 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73944163 chr7:73944165 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_29412 0 0 1 0 1 GTF2IRD1 chr7:73944247 5'GT 73944247 Upstream 83bp
chr9 132863443 132863443 1 + A C LUSC 132863429 + 132863409 132863449 41 CACCATTGCACTCATTGGCACTGGCTGGGCTTTCATTAAGC CACCATTGCACTCATTGGCACTGGCTGGGCTTTCCTTAAGC < 41bp 1 0.235802269197172 1 0.738452732563019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GPR107 ENSG00000148358 CDS Human protein_coding chr9:132863429 chr9:132863443 nonsynonymous SNV 0.998 2 35 hm5C_associated_SNPs_29413 0 0 1 1 2 GPR107 chr9:132863385 3'AG 132863385 Downstream 59bp
chr9 132863443 132863443 1 + A C LUSC 132863429 + 132863409 132863449 41 CACCATTGCACTCATTGGCACTGGCTGGGCTTTCATTAAGC CACCATTGCACTCATTGGCACTGGCTGGGCTTTCCTTAAGC < 41bp 1 0.235802269197172 1 0.738452732563019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GPR107 ENSG00000148358 CDS Human protein_coding chr9:132863429 chr9:132863443 nonsynonymous SNV 0.998 2 35 hm5C_associated_SNPs_29413 0 0 1 1 2 GPR107 chr9:132863502 5'GT 132863502 Upstream 60bp
chr2 71780251 71780251 1 + G T LUSC 71780268 + 71780248 71780288 41 CGGGAACAAGTTCGACATGACCTGCCTGCCGCTGGCCTCCA CGGTAACAAGTTCGACATGACCTGCCTGCCGCTGGCCTCCA < 41bp 1 0.149251215589874 1 0.013826459646225 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71780268 chr2:71780251 synonymous SNV . 0 4 hm5C_associated_SNPs_29414 0 0 0 0 1 DYSF chr2:71780318 5'GT 71780318 Upstream 68bp
chr19 10748940 10748940 1 + G T LUSC 10748954 + 10748934 10748974 41 TATCAGGATCGTGCAGGATACAGCACCACCCCTCAATTATT TATCAGTATCGTGCAGGATACAGCACCACCCCTCAATTATT < 41bp 1 0.514341355688163 1 0.0883971452713013 experiment 0.971317288623673 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10748954 chr19:10748940 nonsynonymous SNV 0.961 1 7 hm5C_associated_SNPs_29415 0 0 1 0 2 SLC44A2 chr19:10748903 3'AG 10748903 Downstream 38bp
chr19 10748940 10748940 1 + G T LUSC 10748954 + 10748934 10748974 41 TATCAGGATCGTGCAGGATACAGCACCACCCCTCAATTATT TATCAGTATCGTGCAGGATACAGCACCACCCCTCAATTATT < 41bp 1 0.514341355688163 1 0.0883971452713013 experiment 0.971317288623673 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10748954 chr19:10748940 nonsynonymous SNV 0.961 1 7 hm5C_associated_SNPs_29415 0 0 1 0 2 SLC44A2 chr19:10748991 5'GT 10748991 Upstream 52bp
chr6 52943674 52943674 1 + G T LUSC 52943668 + 52943648 52943688 41 AGATTACTTATACCCGGTCTCCAGATGGTGATGGCGTTGGA AGATTACTTATACCCGGTCTCCAGATTGTGATGGCGTTGGA < 41bp 1 0.650996551379416 1 0.644495010375977 experiment 0.698006897241169 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXO9 ENSG00000112146 CDS Human protein_coding chr6:52943668 chr6:52943674 nonsynonymous SNV 0.997 2 27 hm5C_associated_SNPs_29416 0 0 1 0 2 FBXO9 chr6:52943597 3'AG 52943597 Downstream 78bp
chr6 52943674 52943674 1 + G T LUSC 52943668 + 52943648 52943688 41 AGATTACTTATACCCGGTCTCCAGATGGTGATGGCGTTGGA AGATTACTTATACCCGGTCTCCAGATTGTGATGGCGTTGGA < 41bp 1 0.650996551379416 1 0.644495010375977 experiment 0.698006897241169 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXO9 ENSG00000112146 CDS Human protein_coding chr6:52943668 chr6:52943674 nonsynonymous SNV 0.997 2 27 hm5C_associated_SNPs_29416 0 0 1 0 2 FBXO9 chr6:52943696 5'GT 52943696 Upstream 23bp
chrX 131202531 131202531 1 + T C LUSC 131202534 + 131202514 131202554 41 ACACAGATTAAAAGAAATACCTTTGTGGGAACTCCATTTTG ACACAGATTAAAAGAAACACCTTTGTGGGAACTCCATTTTG < 41bp 1 0.286779932879144 1 0.0427736937999725 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STK26 ENSG00000134602 CDS Human protein_coding chrX:131202534 chrX:131202531 synonymous SNV . 0 18 hm5C_associated_SNPs_29417 0 0 1 0 2 STK26 chrX:131202440 3'AG 131202440 Downstream 92bp
chrX 131202531 131202531 1 + T C LUSC 131202534 + 131202514 131202554 41 ACACAGATTAAAAGAAATACCTTTGTGGGAACTCCATTTTG ACACAGATTAAAAGAAACACCTTTGTGGGAACTCCATTTTG < 41bp 1 0.286779932879144 1 0.0427736937999725 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STK26 ENSG00000134602 CDS Human protein_coding chrX:131202534 chrX:131202531 synonymous SNV . 0 18 hm5C_associated_SNPs_29417 0 0 1 0 2 STK26 chrX:131202597 5'GT 131202597 Upstream 67bp
chr17 78201679 78201679 1 + G A LUSC 78201694 + 78201674 78201714 41 GATGCGGGACCACGTGCCTCCCGTCCACCCCGAGATGCCCC GATGCAGGACCACGTGCCTCCCGTCCACCCCGAGATGCCCC < 41bp 1 0.102511752206842 1 0.640882730484009 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78201694 chr17:78201679 nonsynonymous SNV 0.707 1 6 hm5C_associated_SNPs_29419 0 0 1 0 1 SLC26A11 chr17:78201759 5'GT 78201759 Upstream 81bp
chr11 122817427 122817427 1 + G C LUSC 122817446 + 122817426 122817466 41 AGCCGTAGCAATTCTGAAGGCTATCTGTTTCAACTGGAAAA ACCCGTAGCAATTCTGAAGGCTATCTGTTTCAACTGGAAAA < 41bp 1 0.10806634780609 1 0.0574584007263184 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122817446 chr11:122817427 nonsynonymous SNV 0.029 0 2 hm5C_associated_SNPs_29420 0 0 0 0 1 C11orf63 chr11:122817500 5'GT 122817500 Upstream 74bp
chr9 116971987 116971987 1 + G T LUSC 116971985 + 116971965 116972005 41 GGCTCCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAA GGCTCCCAGGGCTCTTCGGCCTTCCAGGGTCTGATGGAGAA < 41bp 1 0.0362381600158954 1 0.0809206366539001 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971985 chr9:116971987 synonymous SNV . 0 23 hm5C_associated_SNPs_29428 0 0 1 0 2 COL27A1 chr9:116971955 3'AG 116971955 Downstream 33bp
chr9 116971987 116971987 1 + G T LUSC 116971985 + 116971965 116972005 41 GGCTCCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAA GGCTCCCAGGGCTCTTCGGCCTTCCAGGGTCTGATGGAGAA < 41bp 1 0.0362381600158954 1 0.0809206366539001 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971985 chr9:116971987 synonymous SNV . 0 23 hm5C_associated_SNPs_29428 0 0 1 0 2 COL27A1 chr9:116972008 5'GT 116972008 Upstream 22bp
chr9 116971987 116971987 1 + G T LUSC 116971988 + 116971968 116972008 41 TCCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACGA TCCCAGGGCTCTTCGGCCTTCCAGGGTCTGATGGAGAACGA < 41bp 1 0.209130080688305 1 0.885968863964081 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971988 chr9:116971987 synonymous SNV . 0 20 hm5C_associated_SNPs_29429 0 0 1 0 2 COL27A1 chr9:116971955 3'AG 116971955 Downstream 33bp
chr9 116971987 116971987 1 + G T LUSC 116971988 + 116971968 116972008 41 TCCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACGA TCCCAGGGCTCTTCGGCCTTCCAGGGTCTGATGGAGAACGA < 41bp 1 0.209130080688305 1 0.885968863964081 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971988 chr9:116971987 synonymous SNV . 0 20 hm5C_associated_SNPs_29429 0 0 1 0 2 COL27A1 chr9:116972008 5'GT 116972008 Upstream 22bp
chr9 116971987 116971987 1 + G T LUSC 116971989 + 116971969 116972009 41 CCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACGAG CCCAGGGCTCTTCGGCCTTCCAGGGTCTGATGGAGAACGAG < 41bp 1 0.367734494269889 1 0.884087204933167 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971989 chr9:116971987 synonymous SNV . 0 19 hm5C_associated_SNPs_29430 0 0 1 0 2 COL27A1 chr9:116971955 3'AG 116971955 Downstream 33bp
chr9 116971987 116971987 1 + G T LUSC 116971989 + 116971969 116972009 41 CCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACGAG CCCAGGGCTCTTCGGCCTTCCAGGGTCTGATGGAGAACGAG < 41bp 1 0.367734494269889 1 0.884087204933167 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971989 chr9:116971987 synonymous SNV . 0 19 hm5C_associated_SNPs_29430 0 0 1 0 2 COL27A1 chr9:116972008 5'GT 116972008 Upstream 22bp
chr10 13251236 13251236 1 + G T LUSC 13251239 + 13251219 13251259 41 TTTTCTAGGAAAAGACTGGTCCAAAGATAGGAGGAGAAACT TTTTCTAGGAAAAGACTTGTCCAAAGATAGGAGGAGAAACT < 41bp 1 0.540498955650562 1 0.128528892993927 experiment 0.919002088698877 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM10 ENSG00000065328 CDS Human protein_coding chr10:13251239 chr10:13251236 nonsynonymous SNV 0.952 4 18 hm5C_associated_SNPs_29436 0 0 1 0 1 MCM10 chr10:13251227 3'AG 13251227 Downstream 10bp
chr10 126505162 126505162 1 + C T LUSC 126505159 + 126505139 126505179 41 TTACAGAAATCCATAACCATCAGCCTTGTTCAAAACTTTTT TTACAGAAATCCATAACCATCAGTCTTGTTCAAAACTTTTT < 41bp 1 0.137854145802577 1 0.0580964684486389 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126505159 chr10:126505162 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_29437 0 0 1 0 2 ABRAXAS2 chr10:126505145 3'AG 126505145 Downstream 18bp
chr10 126505162 126505162 1 + C T LUSC 126505159 + 126505139 126505179 41 TTACAGAAATCCATAACCATCAGCCTTGTTCAAAACTTTTT TTACAGAAATCCATAACCATCAGTCTTGTTCAAAACTTTTT < 41bp 1 0.137854145802577 1 0.0580964684486389 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126505159 chr10:126505162 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_29437 0 0 1 0 2 ABRAXAS2 chr10:126505181 5'GT 126505181 Upstream 20bp
chr22 31998624 31998624 1 + A G LUSC 31998614 + 31998594 31998634 41 CCATCCTTCACGCAGAGCGACAGCTTCTGTATAGGTCTTGG CCATCCTTCACGCAGAGCGACAGCTTCTGTGTAGGTCTTGG < 41bp 1 0.160391131660082 1 0.123871803283691 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SFI1 ENSG00000198089 CDS Human protein_coding chr22:31998614 chr22:31998624 nonsynonymous SNV 0.133 0 31 hm5C_associated_SNPs_29438 0 0 1 0 1 SFI1 chr22:31998593 3'AG 31998593 Downstream 32bp
chr1 22336303 22336303 1 + C T LUSC 22336287 + 22336267 22336307 41 TTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCAC TTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGTCCAC < 41bp 1 0.199412974973777 1 0.0322844386100769 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336287 chr1:22336303 nonsynonymous SNV 0.238 4 37 hm5C_associated_SNPs_29439 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 48bp
chr1 22336303 22336303 1 + C T LUSC 22336290 + 22336270 22336310 41 GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGTCCACGGT < 41bp 1 0.573991805793584 1 0.763497114181519 experiment 0.852016388412831 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336290 chr1:22336303 nonsynonymous SNV 0.238 4 34 hm5C_associated_SNPs_29440 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 48bp
chr1 22336303 22336303 1 + C T LUSC 22336293 + 22336273 22336313 41 TCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGTGTT TCTGCCTTTGGCTGCAACTTCATCTGGAAGTCCACGGTGTT < 41bp 1 0.260086066093793 1 0.53032523393631 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336293 chr1:22336303 nonsynonymous SNV 0.238 4 31 hm5C_associated_SNPs_29441 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 48bp
chr1 22336303 22336303 1 + C T LUSC 22336304 + 22336284 22336324 41 CTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCT CTGCAACTTCATCTGGAAGTCCACGGTGTTCACTCGAGTCT < 41bp 1 0.387351876254546 1 0.410474538803101 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336304 chr1:22336303 nonsynonymous SNV 0.238 4 20 hm5C_associated_SNPs_29442 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 48bp
chr1 22336303 22336303 1 + C T LUSC 22336305 + 22336285 22336325 41 TGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTC TGCAACTTCATCTGGAAGTCCACGGTGTTCACTCGAGTCTC < 41bp 1 0.776542661083747 1 0.393245369195938 experiment 0.446914677832505 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336305 chr1:22336303 nonsynonymous SNV 0.238 4 19 hm5C_associated_SNPs_29443 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 48bp
chr1 22336303 22336303 1 + C T LUSC 22336307 + 22336287 22336327 41 CAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCG CAACTTCATCTGGAAGTCCACGGTGTTCACTCGAGTCTCCG < 41bp 1 0.480277648368484 1 0.221152156591415 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336307 chr1:22336303 nonsynonymous SNV 0.238 4 17 hm5C_associated_SNPs_29444 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 48bp
chr1 22336303 22336303 1 + C T LUSC 22336314 + 22336294 22336334 41 ATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCAT ATCTGGAAGTCCACGGTGTTCACTCGAGTCTCCGCCTTCAT < 41bp 1 0.372486175946797 1 0.0185523927211761 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336314 chr1:22336303 nonsynonymous SNV 0.238 4 10 hm5C_associated_SNPs_29445 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 48bp
chr1 22336303 22336303 1 + C T LUSC 22336318 + 22336298 22336338 41 GGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGAC GGAAGTCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGAC < 41bp 1 0.765245057164198 1 0.261654406785965 experiment 0.469509885671605 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336318 chr1:22336303 nonsynonymous SNV 0.238 4 6 hm5C_associated_SNPs_29446 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 48bp
chr1 22336303 22336303 1 + C T LUSC 22336323 + 22336303 22336343 41 CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT TCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT < 41bp 1 0.618547041291022 1 0.170851618051529 experiment 0.762905917417956 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336323 chr1:22336303 nonsynonymous SNV 0.238 4 1 hm5C_associated_SNPs_29447 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 48bp
chr1 151633325 151633325 1 + C T LUSC 151633305 + 151633285 151633325 41 CGAGTAATTGGTGAGAGTGACATCATGCAGGAATTCCTATC CGAGTAATTGGTGAGAGTGACATCATGCAGGAATTCCTATT < 41bp 1 0.286445400039929 1 0.15373107790947 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX27 ENSG00000143376 CDS Human protein_coding chr1:151633305 chr1:151633325 nonsynonymous SNV 0.723 1 41 hm5C_associated_SNPs_29449 0 0 1 0 1 SNX27 chr1:151633338 5'GT 151633338 Upstream 14bp
chr17 37357553 37357553 1 + A G LUSC 37357571 + 37357551 37357591 41 GAAATCGCCAATGCCAACTCCCGTGAGTACCTGGGATCTGT GAGATCGCCAATGCCAACTCCCGTGAGTACCTGGGATCTGT < 41bp 1 0.139909914038959 1 0.057589590549469 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37357571 chr17:37357553 synonymous SNV . 0 3 hm5C_associated_SNPs_29450 0 0 1 0 2 RPL19 chr17:37357466 3'AG 37357466 Downstream 88bp
chr17 37357553 37357553 1 + A G LUSC 37357571 + 37357551 37357591 41 GAAATCGCCAATGCCAACTCCCGTGAGTACCTGGGATCTGT GAGATCGCCAATGCCAACTCCCGTGAGTACCTGGGATCTGT < 41bp 1 0.139909914038959 1 0.057589590549469 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37357571 chr17:37357553 synonymous SNV . 0 3 hm5C_associated_SNPs_29450 0 0 1 0 2 RPL19 chr17:37357572 5'GT 37357572 Upstream 20bp
chr17 37357553 37357553 1 + A G LUSC 37357572 + 37357552 37357592 41 AAATCGCCAATGCCAACTCCCGTGAGTACCTGGGATCTGTC AGATCGCCAATGCCAACTCCCGTGAGTACCTGGGATCTGTC < 41bp 1 0.705399123618328 1 0.387929826974869 experiment 0.589201752763344 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37357572 chr17:37357553 synonymous SNV . 0 2 hm5C_associated_SNPs_29451 0 0 1 0 2 RPL19 chr17:37357466 3'AG 37357466 Downstream 88bp
chr17 37357553 37357553 1 + A G LUSC 37357572 + 37357552 37357592 41 AAATCGCCAATGCCAACTCCCGTGAGTACCTGGGATCTGTC AGATCGCCAATGCCAACTCCCGTGAGTACCTGGGATCTGTC < 41bp 1 0.705399123618328 1 0.387929826974869 experiment 0.589201752763344 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37357572 chr17:37357553 synonymous SNV . 0 2 hm5C_associated_SNPs_29451 0 0 1 0 2 RPL19 chr17:37357572 5'GT 37357572 Upstream 20bp
chr7 142561958 142561958 1 + C G LUSC 142561972 + 142561952 142561992 41 TACCGTCAGGCTGAGGAGCCCGACAGCCCTGACAGCGTTTC TACCGTGAGGCTGAGGAGCCCGACAGCCCTGACAGCGTTTC < 41bp 1 0.738869830788919 1 0.209603101015091 experiment 0.522260338422161 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142561972 chr7:142561958 nonsynonymous SNV 0.990 1 7 hm5C_associated_SNPs_29452 0 0 0 0 1 EPHB6 chr7:142562020 5'GT 142562020 Upstream 63bp
chr5 82868298 82868298 1 + G C LUSC 82868278 + 82868258 82868298 41 CCAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTGTGTTG CCAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTGTGTTC < 41bp 1 0.531742264023068 1 0.613778710365295 experiment 0.936515471953864 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82868278 chr5:82868298 nonsynonymous SNV 0.999 4 41 hm5C_associated_SNPs_29453 0 0 1 0 2 VCAN chr5:82868235 3'AG 82868235 Downstream 64bp
chr5 82868298 82868298 1 + G C LUSC 82868278 + 82868258 82868298 41 CCAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTGTGTTG CCAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTGTGTTC < 41bp 1 0.531742264023068 1 0.613778710365295 experiment 0.936515471953864 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82868278 chr5:82868298 nonsynonymous SNV 0.999 4 41 hm5C_associated_SNPs_29453 0 0 1 0 2 VCAN chr5:82868379 5'GT 82868379 Upstream 82bp
chr22 24574026 24574026 1 + C T LUSC 24574025 + 24574005 24574045 41 CCGGCCCTCTCCGCAGTCAGCCATCCTTTCTGCCCAGTCTG CCGGCCCTCTCCGCAGTCAGCTATCCTTTCTGCCCAGTCTG < 41bp 1 0.0786440413176762 1 0.0618025064468384 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24574025 chr22:24574026 synonymous SNV . 0 22 hm5C_associated_SNPs_29454 0 0 0 0 1 CABIN1 chr22:24574021 3'AG 24574021 Downstream 6bp
chr22 24574026 24574026 1 + C T LUSC 24574029 + 24574009 24574049 41 CCCTCTCCGCAGTCAGCCATCCTTTCTGCCCAGTCTGCTGC CCCTCTCCGCAGTCAGCTATCCTTTCTGCCCAGTCTGCTGC < 41bp 1 0.0434418684171974 1 0.101039081811905 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24574029 chr22:24574026 synonymous SNV . 0 18 hm5C_associated_SNPs_29455 0 0 0 0 1 CABIN1 chr22:24574021 3'AG 24574021 Downstream 6bp
chr19 3525958 3525958 1 + A T LUSC 3525949 + 3525929 3525969 41 GGAGACCGCTTCATCCCCTCCAGAGCCGGAGCCAACTGGAG GGAGACCGCTTCATCCCCTCCAGAGCCGGTGCCAACTGGAG < 41bp 1 0.366440671082577 1 0.804131865501404 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3525949 chr19:3525958 synonymous SNV . 0 30 hm5C_associated_SNPs_29456 0 0 1 0 2 FZR1 chr19:3525866 3'AG 3525866 Downstream 93bp
chr19 3525958 3525958 1 + A T LUSC 3525949 + 3525929 3525969 41 GGAGACCGCTTCATCCCCTCCAGAGCCGGAGCCAACTGGAG GGAGACCGCTTCATCCCCTCCAGAGCCGGTGCCAACTGGAG < 41bp 1 0.366440671082577 1 0.804131865501404 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3525949 chr19:3525958 synonymous SNV . 0 30 hm5C_associated_SNPs_29456 0 0 1 0 2 FZR1 chr19:3525991 5'GT 3525991 Upstream 34bp
chr7 87530089 87530089 1 + G A LUSC 87530094 + 87530074 87530114 41 ATCAGAATCCAAACAGATGGCGATAAGTATGGTGGAACCTC ATCAGAATCCAAACAAATGGCGATAAGTATGGTGGAACCTC < 41bp 1 0.494738905426011 1 0.180264264345169 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530094 chr7:87530089 nonsynonymous SNV 0.332 0 16 hm5C_associated_SNPs_29458 0 0 1 0 1 DBF4 chr7:87530079 3'AG 87530079 Downstream 11bp
chr5 52204822 52204822 1 + G A LUSC 52204817 + 52204797 52204837 41 CTAGTCGGAGCCCCTATGTACATGGGAACAGAGAAGGAGGA CTAGTCGGAGCCCCTATGTACATGGAAACAGAGAAGGAGGA < 41bp 1 0.289998877180393 1 0.248504221439362 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ITGA1 ENSG00000213949 CDS Human protein_coding chr5:52204817 chr5:52204822 nonsynonymous SNV 0.993 4 26 hm5C_associated_SNPs_29459 0 0 1 0 2 ITGA1 chr5:52204728 3'AG 52204728 Downstream 95bp
chr5 52204822 52204822 1 + G A LUSC 52204817 + 52204797 52204837 41 CTAGTCGGAGCCCCTATGTACATGGGAACAGAGAAGGAGGA CTAGTCGGAGCCCCTATGTACATGGAAACAGAGAAGGAGGA < 41bp 1 0.289998877180393 1 0.248504221439362 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ITGA1 ENSG00000213949 CDS Human protein_coding chr5:52204817 chr5:52204822 nonsynonymous SNV 0.993 4 26 hm5C_associated_SNPs_29459 0 0 1 0 2 ITGA1 chr5:52204871 5'GT 52204871 Upstream 50bp
chr11 73941339 73941339 1 + A G LUSC 73941327 + 73941307 73941347 41 TTGAAGCCATGTATGGGGACCTTCCTCCTCCAATTATGCTG TTGAAGCCATGTATGGGGACCTTCCTCCTCCAGTTATGCTG < 41bp 1 0.0722943176578711 1 0.0211982429027557 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PPME1 ENSG00000214517 CDS Human protein_coding chr11:73941327 chr11:73941339 nonsynonymous SNV 0.999 0 33 hm5C_associated_SNPs_29460 0 0 1 0 1 PPME1 chr11:73941290 3'AG 73941290 Downstream 50bp
chr8 37968287 37968287 1 + C T LUSC 37968305 + 37968285 37968325 41 GGCCAACCTGACATGGCAGTCCCGAACACAGGATGAACATC GGTCAACCTGACATGGCAGTCCCGAACACAGGATGAACATC < 41bp 1 0.632084207004651 1 0.281623363494873 experiment 0.735831585990699 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ASH2L ENSG00000129691 CDS Human protein_coding chr8:37968305 chr8:37968287 nonsynonymous SNV 0.899 4 3 hm5C_associated_SNPs_29468 0 0 1 0 2 ASH2L chr8:37968257 3'AG 37968257 Downstream 31bp
chr8 37968287 37968287 1 + C T LUSC 37968305 + 37968285 37968325 41 GGCCAACCTGACATGGCAGTCCCGAACACAGGATGAACATC GGTCAACCTGACATGGCAGTCCCGAACACAGGATGAACATC < 41bp 1 0.632084207004651 1 0.281623363494873 experiment 0.735831585990699 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ASH2L ENSG00000129691 CDS Human protein_coding chr8:37968305 chr8:37968287 nonsynonymous SNV 0.899 4 3 hm5C_associated_SNPs_29468 0 0 1 0 2 ASH2L chr8:37968351 5'GT 37968351 Upstream 65bp
chr1 65895721 65895721 1 + G A LUSC 65895720 + 65895700 65895740 41 GATTTCCTGTTATTCTTGCTCGTGTGGCTGTGGTAAGTTTT GATTTCCTGTTATTCTTGCTCATGTGGCTGTGGTAAGTTTT < 41bp 1 0.172068216204263 1 0.123861581087112 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LEPROT ENSG00000213625 CDS Human protein_coding chr1:65895720 chr1:65895721 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_29470 0 0 1 0 1 LEPROT chr1:65895731 5'GT 65895731 Upstream 11bp
chr17 33953852 33953852 1 + T C LUSC 33953838 + 33953818 33953858 41 CAGTATGTCGCCCTGAGGAACATCAACTTAATTGTCCAGAA CAGTATGTCGCCCTGAGGAACATCAACTTAATTGCCCAGAA < 41bp 1 0.384970197021493 1 0.158101469278336 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP2B1 ENSG00000006125 CDS Human protein_coding chr17:33953838 chr17:33953852 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_29471 0 0 1 0 1 AP2B1 chr17:33953861 5'GT 33953861 Upstream 10bp
chr17 80426666 80426666 1 + G A LUSC 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGTACTGGTAGTGTCTGTGTGTCCTCAATCTTTGC < 41bp 1 0.489303822978705 1 0.553278386592865 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426666 synonymous SNV . 0 10 hm5C_associated_SNPs_29472 0 0 1 0 1 NARF chr17:80426640 3'AG 80426640 Downstream 27bp
chr19 10657572 10657572 1 + C T LUSC 10657575 + 10657555 10657595 41 GCTGTCAGGGTCAGCCTCTCCCAGCCGGTACCATGGGCCTG GCTGTCAGGGTCAGCCTTTCCCAGCCGGTACCATGGGCCTG < 41bp 1 0.51637379835187 1 0.439201891422272 experiment 0.967252403296261 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATG4D ENSG00000130734 CDS Human protein_coding chr19:10657575 chr19:10657572 nonsynonymous SNV 0.155 3 18 hm5C_associated_SNPs_29473 0 0 1 0 1 ATG4D chr19:10657515 3'AG 10657515 Downstream 58bp
chr1 109801659 109801659 1 + C T LUSC 109801667 + 109801647 109801687 41 CGCTGCCGCAGCCGCGAGGGCGGCTACACCTGCCTCTGTCG CGCTGCCGCAGCTGCGAGGGCGGCTACACCTGCCTCTGTCG < 41bp 1 0.283798995760737 1 0.751847982406616 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801667 chr1:109801659 nonsynonymous SNV 0.998 2 13 hm5C_associated_SNPs_29474 0 0 1 0 1 CELSR2 chr1:109801701 5'GT 109801701 Upstream 43bp
chr22 30038233 30038233 1 + G A LUSC 30038248 + 30038228 30038268 41 CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG CTCCTAAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG < 41bp 1 0.670010011061698 1 0.401522934436798 experiment 0.659979977876604 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30038248 chr22:30038233 nonsynonymous SNV 0.996 5 6 hm5C_associated_SNPs_29475 0 0 1 0 2 NF2 chr22:30038191 3'AG 30038191 Downstream 43bp
chr22 30038233 30038233 1 + G A LUSC 30038248 + 30038228 30038268 41 CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG CTCCTAAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG < 41bp 1 0.670010011061698 1 0.401522934436798 experiment 0.659979977876604 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30038248 chr22:30038233 nonsynonymous SNV 0.996 5 6 hm5C_associated_SNPs_29475 0 0 1 0 2 NF2 chr22:30038274 5'GT 30038274 Upstream 42bp
chr5 1034385 1034385 1 + C A LUSC 1034388 + 1034368 1034408 41 TCGGTGGAGGAGGACGACCGCCAGGAGTGGACGTTCACGCT TCGGTGGAGGAGGACGAACGCCAGGAGTGGACGTTCACGCT < 41bp 1 0.493690028622126 1 0.633056879043579 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1034388 chr5:1034385 nonsynonymous SNV 0.038 1 18 hm5C_associated_SNPs_29481 0 0 0 0 2 NKD2 chr5:1034350 3'AG 1034350 Downstream 36bp
chr5 1034385 1034385 1 + C A LUSC 1034388 + 1034368 1034408 41 TCGGTGGAGGAGGACGACCGCCAGGAGTGGACGTTCACGCT TCGGTGGAGGAGGACGAACGCCAGGAGTGGACGTTCACGCT < 41bp 1 0.493690028622126 1 0.633056879043579 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1034388 chr5:1034385 nonsynonymous SNV 0.038 1 18 hm5C_associated_SNPs_29481 0 0 0 0 2 NKD2 chr5:1034445 5'GT 1034445 Upstream 61bp
chr7 142561968 142561968 1 + A G LUSC 142561972 + 142561952 142561992 41 TACCGTCAGGCTGAGGAGCCCGACAGCCCTGACAGCGTTTC TACCGTCAGGCTGAGGGGCCCGACAGCCCTGACAGCGTTTC < 41bp 1 0.684943205468582 1 0.198333859443665 experiment 0.630113589062836 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142561972 chr7:142561968 nonsynonymous SNV 0.995 1 17 hm5C_associated_SNPs_29482 0 0 0 0 1 EPHB6 chr7:142562020 5'GT 142562020 Upstream 53bp
chr2 11300664 11300664 1 + C T LUSC 11300656 + 11300636 11300676 41 CGCTGACCTACCTGGAGTACCCCATCCTCATCGCGCAAGGT CGCTGACCTACCTGGAGTACCCCATCCTTATCGCGCAAGGT < 41bp 1 0.183425425158263 1 0.31443452835083 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11300656 chr2:11300664 synonymous SNV . 0 29 hm5C_associated_SNPs_29483 0 0 1 0 2 PQLC3 chr2:11300592 3'AG 11300592 Downstream 73bp
chr2 11300664 11300664 1 + C T LUSC 11300656 + 11300636 11300676 41 CGCTGACCTACCTGGAGTACCCCATCCTCATCGCGCAAGGT CGCTGACCTACCTGGAGTACCCCATCCTTATCGCGCAAGGT < 41bp 1 0.183425425158263 1 0.31443452835083 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11300656 chr2:11300664 synonymous SNV . 0 29 hm5C_associated_SNPs_29483 0 0 1 0 2 PQLC3 chr2:11300674 5'GT 11300674 Upstream 11bp
chr17 48434128 48434128 1 + T G LUSC 48434109 + 48434089 48434129 41 ACCATGCCGCCACTGCTGCACCCCCAATGGGCACCCCACTC ACCATGCCGCCACTGCTGCACCCCCAATGGGCACCCCACGC < 41bp 1 0.142771243354491 1 0.0547497272491455 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48434109 chr17:48434128 nonsynonymous SNV 0.857 0 40 hm5C_associated_SNPs_29484 0 0 1 0 1 XYLT2 chr17:48434134 5'GT 48434134 Upstream 7bp
chr2 32897410 32897410 1 + G C LUSC 32897396 + 32897376 32897416 41 TAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCGGATCTG TAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCCGATCTG < 41bp 1 0.208142368362903 1 0.241556257009506 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32897396 chr2:32897410 synonymous SNV . 0 35 hm5C_associated_SNPs_29485 0 0 1 0 2 TTC27 chr2:32897339 3'AG 32897339 Downstream 72bp
chr2 32897410 32897410 1 + G C LUSC 32897396 + 32897376 32897416 41 TAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCGGATCTG TAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCCGATCTG < 41bp 1 0.208142368362903 1 0.241556257009506 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32897396 chr2:32897410 synonymous SNV . 0 35 hm5C_associated_SNPs_29485 0 0 1 0 2 TTC27 chr2:32897451 5'GT 32897451 Upstream 42bp
chr1 47838719 47838719 1 + C G LUSC 47838724 + 47838704 47838744 41 CCTTCAAGGATGGAACAAGACCATGGATGGGAAGGCAGATG CCTTCAAGGATGGAAGAAGACCATGGATGGGAAGGCAGATG < 41bp 1 0.461552895079547 1 0.0771947503089905 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CMPK1 ENSG00000162368 CDS Human protein_coding chr1:47838724 chr1:47838719 nonsynonymous SNV 0.996 1 16 hm5C_associated_SNPs_29487 0 0 1 2 2 CMPK1 chr1:47838627 3'AG 47838627 Downstream 93bp
chr1 47838719 47838719 1 + C G LUSC 47838724 + 47838704 47838744 41 CCTTCAAGGATGGAACAAGACCATGGATGGGAAGGCAGATG CCTTCAAGGATGGAAGAAGACCATGGATGGGAAGGCAGATG < 41bp 1 0.461552895079547 1 0.0771947503089905 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CMPK1 ENSG00000162368 CDS Human protein_coding chr1:47838724 chr1:47838719 nonsynonymous SNV 0.996 1 16 hm5C_associated_SNPs_29487 0 0 1 2 2 CMPK1 chr1:47838779 5'GT 47838779 Upstream 61bp
chr10 5494346 5494346 1 + G C LUSC 5494328 + 5494308 5494348 41 TTTCTTTTTTAAGTCATTTACCCTTCGTGGTGACCACAGAT TTTCTTTTTTAAGTCATTTACCCTTCGTGGTGACCACACAT < 41bp 1 0.0883154325192702 1 0.0573877096176147 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NET1 ENSG00000173848 CDS Human protein_coding chr10:5494328 chr10:5494346 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_29488 0 0 1 0 1 NET1 chr10:5494321 3'AG 5494321 Downstream 26bp
chr5 118529647 118529647 1 + C G LUSC 118529637 + 118529617 118529657 41 TAGCATCAGATTTCCATCTCCAGGAACATTCTAATTCAAAT TAGCATCAGATTTCCATCTCCAGGAACATTGTAATTCAAAT < 41bp 1 0.263935381993033 1 0.878318846225739 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DMXL1 ENSG00000172869 CDS Human protein_coding chr5:118529637 chr5:118529647 nonsynonymous SNV 0.995 3 31 hm5C_associated_SNPs_29491 0 0 1 0 1 DMXL1 chr5:118529665 5'GT 118529665 Upstream 19bp
chr16 30773931 30773931 1 + T C LUSC 30773915 + 30773895 30773935 41 CCGGCGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCTGAGT CCGGCGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCCGAGT < 41bp 1 0.12761057684388 1 0.282474994659424 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30773915 chr16:30773931 nonsynonymous SNV 0.996 0 37 hm5C_associated_SNPs_29492 0 0 1 0 1 RNF40 chr16:30773998 5'GT 30773998 Upstream 68bp
chr16 30773931 30773931 1 + T C LUSC 30773916 + 30773896 30773936 41 CGGCGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCTGAGTC CGGCGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCCGAGTC < 41bp 1 0.402872423199837 1 0.45452493429184 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30773916 chr16:30773931 nonsynonymous SNV 0.996 0 36 hm5C_associated_SNPs_29493 0 0 1 0 1 RNF40 chr16:30773998 5'GT 30773998 Upstream 68bp
chr16 30773931 30773931 1 + T C LUSC 30773917 + 30773897 30773937 41 GGCGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCTGAGTCG GGCGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCCGAGTCG < 41bp 1 0.579410029859442 1 0.688372492790222 experiment 0.841179940281116 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30773917 chr16:30773931 nonsynonymous SNV 0.996 0 35 hm5C_associated_SNPs_29494 0 0 1 0 1 RNF40 chr16:30773998 5'GT 30773998 Upstream 68bp
chr16 30773931 30773931 1 + T C LUSC 30773918 + 30773898 30773938 41 GCGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCTGAGTCGT GCGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCCGAGTCGT < 41bp 1 0.669617580426288 1 0.575144231319427 experiment 0.660764839147424 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30773918 chr16:30773931 nonsynonymous SNV 0.996 0 34 hm5C_associated_SNPs_29495 0 0 1 0 1 RNF40 chr16:30773998 5'GT 30773998 Upstream 68bp
chr11 73638345 73638345 1 + A C LUSC 73638335 + 73638315 73638355 41 ATTCTTGTGTTTTAGGTAGCCACATGGGAGAAGCAGATCTA ATTCTTGTGTTTTAGGTAGCCACATGGGAGCAGCAGATCTA < 41bp 1 0.60622309279437 1 0.828021645545959 experiment 0.78755381441126 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PAAF1 ENSG00000175575 CDS Human protein_coding chr11:73638335 chr11:73638345 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_29496 0 0 1 0 1 PAAF1 chr11:73638330 3'AG 73638330 Downstream 16bp
chr1 237044071 237044071 1 + A C LUSC 237044057 + 237044037 237044077 41 TCTGACCCTTCTTTTTAGAACCCACACAGCAGTTAAAATAG TCTGACCCTTCTTTTTAGAACCCACACAGCAGTTCAAATAG < 41bp 1 0.0353023449400283 1 0.0942713022232056 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MTR ENSG00000116984 CDS Human protein_coding chr1:237044057 chr1:237044071 nonsynonymous SNV 0.998 4 35 hm5C_associated_SNPs_29498 0 0 1 0 2 MTR chr1:237044055 3'AG 237044055 Downstream 17bp
chr1 237044071 237044071 1 + A C LUSC 237044057 + 237044037 237044077 41 TCTGACCCTTCTTTTTAGAACCCACACAGCAGTTAAAATAG TCTGACCCTTCTTTTTAGAACCCACACAGCAGTTCAAATAG < 41bp 1 0.0353023449400283 1 0.0942713022232056 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MTR ENSG00000116984 CDS Human protein_coding chr1:237044057 chr1:237044071 nonsynonymous SNV 0.998 4 35 hm5C_associated_SNPs_29498 0 0 1 0 2 MTR chr1:237044136 5'GT 237044136 Upstream 66bp
chr19 39215195 39215195 1 + C A LUSC 39215182 + 39215162 39215202 41 GCCAGGCCAATGTTGTGGGGCCCTGGATCCAGACCAAGATG GCCAGGCCAATGTTGTGGGGCCCTGGATCCAGAACAAGATG < 41bp 1 0.0888925041976835 1 0.021841287612915 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215182 chr19:39215195 nonsynonymous SNV 0.998 0 34 hm5C_associated_SNPs_29499 0 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 11bp
chr19 39215195 39215195 1 + C A LUSC 39215184 + 39215164 39215204 41 CAGGCCAATGTTGTGGGGCCCTGGATCCAGACCAAGATGGA CAGGCCAATGTTGTGGGGCCCTGGATCCAGAACAAGATGGA < 41bp 1 0.714140740650448 1 0.536302506923676 experiment 0.571718518699104 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215184 chr19:39215195 nonsynonymous SNV 0.998 0 32 hm5C_associated_SNPs_29500 0 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 11bp
chr19 39215195 39215195 1 + C A LUSC 39215191 + 39215171 39215211 41 ATGTTGTGGGGCCCTGGATCCAGACCAAGATGGAGGTGAGG ATGTTGTGGGGCCCTGGATCCAGAACAAGATGGAGGTGAGG < 41bp 1 0.610170207422138 1 0.701059281826019 experiment 0.779659585155724 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215191 chr19:39215195 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_29501 0 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 11bp
chr20 37570718 37570718 1 + T C LUSC 37570736 + 37570716 37570756 41 TCTCAATTTCTGGATATGTGCATGGATCTGAAAGTTCATCC TCCCAATTTCTGGATATGTGCATGGATCTGAAAGTTCATCC < 41bp 1 0.41238750938188 1 0.0542148947715759 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM83D ENSG00000101447 CDS Human protein_coding chr20:37570736 chr20:37570718 synonymous SNV . 0 3 hm5C_associated_SNPs_29504 0 0 1 0 1 FAM83D chr20:37570769 5'GT 37570769 Upstream 52bp
chr10 26994282 26994282 1 + G T LUSC 26994265 + 26994245 26994285 41 ACACAGTGGTGAAAAATACACCGATCCTTTCAAACTCGGTT ACACAGTGGTGAAAAATACACCGATCCTTTCAAACTCTGTT < 41bp 1 0.218927803425944 1 0.0496455729007721 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDSS1 ENSG00000148459 CDS Human protein_coding chr10:26994265 chr10:26994282 nonsynonymous SNV 0.987 3 38 hm5C_associated_SNPs_29508 0 0 0 0 2 PDSS1 chr10:26994215 3'AG 26994215 Downstream 68bp
chr10 26994282 26994282 1 + G T LUSC 26994265 + 26994245 26994285 41 ACACAGTGGTGAAAAATACACCGATCCTTTCAAACTCGGTT ACACAGTGGTGAAAAATACACCGATCCTTTCAAACTCTGTT < 41bp 1 0.218927803425944 1 0.0496455729007721 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDSS1 ENSG00000148459 CDS Human protein_coding chr10:26994265 chr10:26994282 nonsynonymous SNV 0.987 3 38 hm5C_associated_SNPs_29508 0 0 0 0 2 PDSS1 chr10:26994323 5'GT 26994323 Upstream 42bp
chr7 142460355 142460355 1 + T A LUSC 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAGCCAGGCTAAGTGTGAAGCCTCCTACCCAGGAAAGATTA < 41bp 1 0.0559660186949626 1 0.175379753112793 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460355 synonymous SNV . 0 31 hm5C_associated_SNPs_29509 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 74bp
chr7 142460355 142460355 1 + T A LUSC 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAGCCAGGCTAAGTGTGAAGCCTCCTACCCAGGAAAGATTA < 41bp 1 0.0559660186949626 1 0.175379753112793 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460355 synonymous SNV . 0 31 hm5C_associated_SNPs_29509 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 64bp
chr7 142460355 142460355 1 + T A LUSC 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AGCCAGGCTAAGTGTGAAGCCTCCTACCCAGGAAAGATTAC < 41bp 1 0.279763911444594 1 0.513380169868469 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460355 synonymous SNV . 0 30 hm5C_associated_SNPs_29510 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 74bp
chr7 142460355 142460355 1 + T A LUSC 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AGCCAGGCTAAGTGTGAAGCCTCCTACCCAGGAAAGATTAC < 41bp 1 0.279763911444594 1 0.513380169868469 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460355 synonymous SNV . 0 30 hm5C_associated_SNPs_29510 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 64bp
chr7 142460355 142460355 1 + T A LUSC 142460348 + 142460328 142460368 41 CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA CCAGGCTAAGTGTGAAGCCTCCTACCCAGGAAAGATTACCA < 41bp 1 0.0225839102579718 1 0.200101405382156 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460348 chr7:142460355 synonymous SNV . 0 28 hm5C_associated_SNPs_29511 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 74bp
chr7 142460355 142460355 1 + T A LUSC 142460348 + 142460328 142460368 41 CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA CCAGGCTAAGTGTGAAGCCTCCTACCCAGGAAAGATTACCA < 41bp 1 0.0225839102579718 1 0.200101405382156 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460348 chr7:142460355 synonymous SNV . 0 28 hm5C_associated_SNPs_29511 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 64bp
chr7 142460355 142460355 1 + T A LUSC 142460349 + 142460329 142460369 41 CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG CAGGCTAAGTGTGAAGCCTCCTACCCAGGAAAGATTACCAG < 41bp 1 0.193897441186422 1 0.200788646936417 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460349 chr7:142460355 synonymous SNV . 0 27 hm5C_associated_SNPs_29512 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 74bp
chr7 142460355 142460355 1 + T A LUSC 142460349 + 142460329 142460369 41 CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG CAGGCTAAGTGTGAAGCCTCCTACCCAGGAAAGATTACCAG < 41bp 1 0.193897441186422 1 0.200788646936417 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460349 chr7:142460355 synonymous SNV . 0 27 hm5C_associated_SNPs_29512 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 64bp
chr7 142460355 142460355 1 + T A LUSC 142460352 + 142460332 142460372 41 GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA GCTAAGTGTGAAGCCTCCTACCCAGGAAAGATTACCAGCAA < 41bp 1 0.520130115498469 1 0.721673130989075 experiment 0.959739769003061 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460352 chr7:142460355 synonymous SNV . 0 24 hm5C_associated_SNPs_29513 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 74bp
chr7 142460355 142460355 1 + T A LUSC 142460352 + 142460332 142460372 41 GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA GCTAAGTGTGAAGCCTCCTACCCAGGAAAGATTACCAGCAA < 41bp 1 0.520130115498469 1 0.721673130989075 experiment 0.959739769003061 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460352 chr7:142460355 synonymous SNV . 0 24 hm5C_associated_SNPs_29513 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 64bp
chr7 142460355 142460355 1 + T A LUSC 142460353 + 142460333 142460373 41 CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC CTAAGTGTGAAGCCTCCTACCCAGGAAAGATTACCAGCAAC < 41bp 1 0.527223695986421 1 0.598798751831055 experiment 0.945552608027159 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460353 chr7:142460355 synonymous SNV . 0 23 hm5C_associated_SNPs_29514 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 74bp
chr7 142460355 142460355 1 + T A LUSC 142460353 + 142460333 142460373 41 CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC CTAAGTGTGAAGCCTCCTACCCAGGAAAGATTACCAGCAAC < 41bp 1 0.527223695986421 1 0.598798751831055 experiment 0.945552608027159 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460353 chr7:142460355 synonymous SNV . 0 23 hm5C_associated_SNPs_29514 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 64bp
chr7 142460355 142460355 1 + T A LUSC 142460354 + 142460334 142460374 41 TAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAACA TAAGTGTGAAGCCTCCTACCCAGGAAAGATTACCAGCAACA < 41bp 1 0.793236084762552 1 0.847796440124512 experiment 0.413527830474895 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460354 chr7:142460355 synonymous SNV . 0 22 hm5C_associated_SNPs_29515 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 74bp
chr7 142460355 142460355 1 + T A LUSC 142460354 + 142460334 142460374 41 TAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAACA TAAGTGTGAAGCCTCCTACCCAGGAAAGATTACCAGCAACA < 41bp 1 0.793236084762552 1 0.847796440124512 experiment 0.413527830474895 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460354 chr7:142460355 synonymous SNV . 0 22 hm5C_associated_SNPs_29515 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 64bp
chr7 142460355 142460355 1 + T A LUSC 142460366 + 142460346 142460386 41 CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG CTCCTACCCAGGAAAGATTACCAGCAACATGTTCTGTGTGG < 41bp 1 0.141708701186837 1 0.112222105264664 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460366 chr7:142460355 synonymous SNV . 0 10 hm5C_associated_SNPs_29516 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 74bp
chr7 142460355 142460355 1 + T A LUSC 142460366 + 142460346 142460386 41 CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG CTCCTACCCAGGAAAGATTACCAGCAACATGTTCTGTGTGG < 41bp 1 0.141708701186837 1 0.112222105264664 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460366 chr7:142460355 synonymous SNV . 0 10 hm5C_associated_SNPs_29516 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 64bp
chr7 142460355 142460355 1 + T A LUSC 142460367 + 142460347 142460387 41 TCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG TCCTACCCAGGAAAGATTACCAGCAACATGTTCTGTGTGGG < 41bp 1 0.640751384197836 1 0.822092294692993 experiment 0.718497231604328 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460367 chr7:142460355 synonymous SNV . 0 9 hm5C_associated_SNPs_29517 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 74bp
chr7 142460355 142460355 1 + T A LUSC 142460367 + 142460347 142460387 41 TCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG TCCTACCCAGGAAAGATTACCAGCAACATGTTCTGTGTGGG < 41bp 1 0.640751384197836 1 0.822092294692993 experiment 0.718497231604328 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460367 chr7:142460355 synonymous SNV . 0 9 hm5C_associated_SNPs_29517 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 64bp
chr7 142460355 142460355 1 + T A LUSC 142460370 + 142460350 142460390 41 TACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT TACCCAGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT < 41bp 1 0.495359073204251 1 0.543113052845001 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460370 chr7:142460355 synonymous SNV . 0 6 hm5C_associated_SNPs_29518 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 74bp
chr7 142460355 142460355 1 + T A LUSC 142460370 + 142460350 142460390 41 TACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT TACCCAGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT < 41bp 1 0.495359073204251 1 0.543113052845001 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460370 chr7:142460355 synonymous SNV . 0 6 hm5C_associated_SNPs_29518 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 64bp
chr7 142460355 142460355 1 + T A LUSC 142460373 + 142460353 142460393 41 CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT CCAGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT < 41bp 1 0.195078689489534 1 0.069938451051712 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460373 chr7:142460355 synonymous SNV . 0 3 hm5C_associated_SNPs_29519 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 74bp
chr7 142460355 142460355 1 + T A LUSC 142460373 + 142460353 142460393 41 CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT CCAGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT < 41bp 1 0.195078689489534 1 0.069938451051712 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460373 chr7:142460355 synonymous SNV . 0 3 hm5C_associated_SNPs_29519 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 64bp
chr2 32656071 32656071 1 + A C LUSC 32656070 + 32656050 32656090 41 TAGAAGTTCAACAAGAACAGCAGCAAAGGAGGCATCCTCAA TAGAAGTTCAACAAGAACAGCCGCAAAGGAGGCATCCTCAA < 41bp 1 0.147737480998986 1 0.0655243694782257 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32656070 chr2:32656071 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_29521 0 0 1 0 1 BIRC6 chr2:32656158 5'GT 32656158 Upstream 88bp
chr17 26685959 26685959 1 + G A LUSC 26685943 + 26685923 26685963 41 AACCTTTTCTTCTCAGATTCCAAACTATACCTCCATGAGCT AACCTTTTCTTCTCAGATTCCAAACTATACCTCCATAAGCT < 41bp 1 0.108976790913818 1 0.115797102451324 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM199 ENSG00000244045 CDS Human protein_coding chr17:26685943 chr17:26685959 nonsynonymous SNV 0.991 3 37 hm5C_associated_SNPs_29522 0 0 1 0 2 TMEM199 chr17:26685939 3'AG 26685939 Downstream 21bp
chr17 26685959 26685959 1 + G A LUSC 26685943 + 26685923 26685963 41 AACCTTTTCTTCTCAGATTCCAAACTATACCTCCATGAGCT AACCTTTTCTTCTCAGATTCCAAACTATACCTCCATAAGCT < 41bp 1 0.108976790913818 1 0.115797102451324 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM199 ENSG00000244045 CDS Human protein_coding chr17:26685943 chr17:26685959 nonsynonymous SNV 0.991 3 37 hm5C_associated_SNPs_29522 0 0 1 0 2 TMEM199 chr17:26686012 5'GT 26686012 Upstream 54bp
chr12 111744769 111744769 1 + C T LUSC 111744768 + 111744748 111744788 41 CTCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACA CTCGGGCCCTCGGCTGGAGGCTGCGCTGGCCTCCAAGGACA < 41bp 1 0.521965070503231 1 0.127108305692673 experiment 0.956069858993538 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744768 chr12:111744769 synonymous SNV . 0 22 hm5C_associated_SNPs_29523 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 45bp
chr12 111744769 111744769 1 + C T LUSC 111744777 + 111744757 111744797 41 TCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCC TCGGCTGGAGGCTGCGCTGGCCTCCAAGGACAGGGAGATCC < 41bp 1 0.0317638717705708 1 0.0769859552383423 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744777 chr12:111744769 synonymous SNV . 0 13 hm5C_associated_SNPs_29524 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 45bp
chr12 111744769 111744769 1 + C T LUSC 111744778 + 111744758 111744798 41 CGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCT CGGCTGGAGGCTGCGCTGGCCTCCAAGGACAGGGAGATCCT < 41bp 1 0.510912278464031 1 0.951729834079742 experiment 0.978175443071938 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744778 chr12:111744769 synonymous SNV . 0 12 hm5C_associated_SNPs_29525 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 45bp
chr12 111744769 111744769 1 + C T LUSC 111744780 + 111744760 111744800 41 GCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGC GCTGGAGGCTGCGCTGGCCTCCAAGGACAGGGAGATCCTGC < 41bp 1 0.270768665597215 1 0.84329742193222 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744780 chr12:111744769 synonymous SNV . 0 10 hm5C_associated_SNPs_29526 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 45bp
chr12 111744769 111744769 1 + C T LUSC 111744781 + 111744761 111744801 41 CTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGCG CTGGAGGCTGCGCTGGCCTCCAAGGACAGGGAGATCCTGCG < 41bp 1 0.417368120129342 1 0.823225021362305 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744781 chr12:111744769 synonymous SNV . 0 9 hm5C_associated_SNPs_29527 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 45bp
chr19 11105646 11105646 1 + G C LUSC 11105627 + 11105607 11105647 41 ATGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACGAGCGG ATGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACGAGCCG < 41bp 1 0.643163187323227 1 0.701238751411438 experiment 0.713673625353547 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11105627 chr19:11105646 nonsynonymous SNV 0.010 4 40 hm5C_associated_SNPs_29528 0 0 1 0 1 SMARCA4 chr19:11105677 5'GT 11105677 Upstream 32bp
chr19 58906108 58906108 1 + C G LUSC 58906094 + 58906074 58906114 41 AGAAGAAGGACGAGCTGGAGCGTGTGGCCAAGTCCAACCGC AGAAGAAGGACGAGCTGGAGCGTGTGGCCAAGTCGAACCGC < 41bp 1 0.655669862638692 1 0.302331566810608 experiment 0.688660274722615 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906094 chr19:58906108 synonymous SNV . 0 35 hm5C_associated_SNPs_29529 0 0 1 0 1 RPS5 chr19:58906049 3'AG 58906049 Downstream 60bp
chr19 58906108 58906108 1 + C G LUSC 58906102 + 58906082 58906122 41 GACGAGCTGGAGCGTGTGGCCAAGTCCAACCGCTGATTTTC GACGAGCTGGAGCGTGTGGCCAAGTCGAACCGCTGATTTTC < 41bp 1 0.672004706194465 1 0.623730719089508 experiment 0.655990587611071 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906102 chr19:58906108 synonymous SNV . 0 27 hm5C_associated_SNPs_29530 0 0 1 0 1 RPS5 chr19:58906049 3'AG 58906049 Downstream 60bp
chr19 58906108 58906108 1 + C G LUSC 58906107 + 58906087 58906127 41 GCTGGAGCGTGTGGCCAAGTCCAACCGCTGATTTTCCCAGC GCTGGAGCGTGTGGCCAAGTCGAACCGCTGATTTTCCCAGC < 41bp 1 0.639144196515235 1 0.576882243156433 experiment 0.721711606969529 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906107 chr19:58906108 synonymous SNV . 0 22 hm5C_associated_SNPs_29531 0 0 1 0 1 RPS5 chr19:58906049 3'AG 58906049 Downstream 60bp
chr19 10794147 10794147 1 + C T LUSC 10794136 + 10794116 10794156 41 TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG TGCCCTAGAAAAGCTTTTCCCTGACACCCCTTTCGCCCTTG < 41bp 1 0.451699805133494 1 0.153491526842117 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794136 chr19:10794147 nonsynonymous SNV 0.224 1 32 hm5C_associated_SNPs_29532 0 0 1 0 1 ILF3 chr19:10794218 5'GT 10794218 Upstream 72bp
chr19 10794147 10794147 1 + C T LUSC 10794142 + 10794122 10794162 41 AGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTGATGCCA AGAAAAGCTTTTCCCTGACACCCCTTTCGCCCTTGATGCCA < 41bp 1 0.256798637313306 1 0.0395611226558685 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794142 chr19:10794147 nonsynonymous SNV 0.224 1 26 hm5C_associated_SNPs_29533 0 0 1 0 1 ILF3 chr19:10794218 5'GT 10794218 Upstream 72bp
chr2 75107472 75107472 1 + G A LUSC 75107484 + 75107464 75107504 41 GGATGGCAGTGGCAAAGGTGCAGCCATGGTGACAGCAGTGG GGATGGCAATGGCAAAGGTGCAGCCATGGTGACAGCAGTGG < 41bp 1 0.306565567777666 1 0.0725996792316437 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HK2 ENSG00000159399 CDS Human protein_coding chr2:75107484 chr2:75107472 nonsynonymous SNV 0.998 3 9 hm5C_associated_SNPs_29534 0 0 0 0 1 HK2 chr2:75107392 3'AG 75107392 Downstream 81bp
chr5 7889305 7889305 1 + G T LUSC 7889293 + 7889273 7889313 41 GTGCAGTAAACAAGGGGCAGCCGATTATAGCCGCTTTGTAC GTGCAGTAAACAAGGGGCAGCCGATTATAGCCTCTTTGTAC < 41bp 1 0.209518129954156 1 0.0996688306331635 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7889293 chr5:7889305 nonsynonymous SNV 0.029 0 33 hm5C_associated_SNPs_29535 0 0 1 0 2 MTRR chr5:7889208 3'AG 7889208 Downstream 98bp
chr5 7889305 7889305 1 + G T LUSC 7889293 + 7889273 7889313 41 GTGCAGTAAACAAGGGGCAGCCGATTATAGCCGCTTTGTAC GTGCAGTAAACAAGGGGCAGCCGATTATAGCCTCTTTGTAC < 41bp 1 0.209518129954156 1 0.0996688306331635 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7889293 chr5:7889305 nonsynonymous SNV 0.029 0 33 hm5C_associated_SNPs_29535 0 0 1 0 2 MTRR chr5:7889388 5'GT 7889388 Upstream 84bp
chr20 44673693 44673693 1 + A G LUSC 44673677 + 44673657 44673697 41 TCTCCATGGGTAATTGTCATCGGATCCTTCTTCTCCACCTG TCTCCATGGGTAATTGTCATCGGATCCTTCTTCTCCGCCTG < 41bp 1 0.583233220909574 1 0.833322644233704 experiment 0.833533558180853 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44673677 chr20:44673693 nonsynonymous SNV 0.998 3 37 hm5C_associated_SNPs_29536 0 0 0 0 2 SLC12A5 chr20:44673605 3'AG 44673605 Downstream 89bp
chr20 44673693 44673693 1 + A G LUSC 44673677 + 44673657 44673697 41 TCTCCATGGGTAATTGTCATCGGATCCTTCTTCTCCACCTG TCTCCATGGGTAATTGTCATCGGATCCTTCTTCTCCGCCTG < 41bp 1 0.583233220909574 1 0.833322644233704 experiment 0.833533558180853 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44673677 chr20:44673693 nonsynonymous SNV 0.998 3 37 hm5C_associated_SNPs_29536 0 0 0 0 2 SLC12A5 chr20:44673779 5'GT 44673779 Upstream 87bp
chr16 2806571 2806571 1 + G A LUSC 2806567 + 2806547 2806587 41 AGCGCAAGCGGCGCGTCGAGCTGCGATGCCTCGAGCTGGAG AGCGCAAGCGGCGCGTCGAGCTGCAATGCCTCGAGCTGGAG < 41bp 1 0.751518570542605 1 0.31623911857605 experiment 0.49696285891479 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2806567 chr16:2806571 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_29537 0 0 1 0 1 SRRM2 chr16:2806607 5'GT 2806607 Upstream 37bp
chr16 2806571 2806571 1 + G A LUSC 2806570 + 2806550 2806590 41 GCAAGCGGCGCGTCGAGCTGCGATGCCTCGAGCTGGAGGAG GCAAGCGGCGCGTCGAGCTGCAATGCCTCGAGCTGGAGGAG < 41bp 1 0.177970282143934 1 0.157950729131699 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2806570 chr16:2806571 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_29538 0 0 1 0 1 SRRM2 chr16:2806607 5'GT 2806607 Upstream 37bp
chr16 2806571 2806571 1 + G A LUSC 2806576 + 2806556 2806596 41 GGCGCGTCGAGCTGCGATGCCTCGAGCTGGAGGAGATGATG GGCGCGTCGAGCTGCAATGCCTCGAGCTGGAGGAGATGATG < 41bp 1 0.782715967556129 1 0.858043909072876 experiment 0.434568064887742 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2806576 chr16:2806571 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_29539 0 0 1 0 1 SRRM2 chr16:2806607 5'GT 2806607 Upstream 37bp
chr16 2806571 2806571 1 + G A LUSC 2806582 + 2806562 2806602 41 TCGAGCTGCGATGCCTCGAGCTGGAGGAGATGATGGAAGAG TCGAGCTGCAATGCCTCGAGCTGGAGGAGATGATGGAAGAG < 41bp 1 0.752243679820971 1 0.461572617292404 experiment 0.495512640358057 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2806582 chr16:2806571 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_29540 0 0 1 0 1 SRRM2 chr16:2806607 5'GT 2806607 Upstream 37bp
chr20 31021637 31021637 1 + C T LUSC 31021621 + 31021601 31021641 41 TCCTTTCCCGAAAAGAAGCCCCGGCTTGAAGATCGTCAGTC TCCTTTCCCGAAAAGAAGCCCCGGCTTGAAGATCGTTAGTC < 41bp 1 0.131471594382374 1 0.200576514005661 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021621 chr20:31021637 stopgain 1.000 1 37 hm5C_associated_SNPs_29541 0 0 1 0 1 ASXL1 chr20:31021720 5'GT 31021720 Upstream 84bp
chr1 39851507 39851507 1 + C G LUSC 39851491 + 39851471 39851511 41 CGAGGTTAAGGAGGCTCAGACACTGTGCGATGAACTCTCAG CGAGGTTAAGGAGGCTCAGACACTGTGCGATGAACTGTCAG < 41bp 1 0.162496953289647 1 0.382231920957565 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39851491 chr1:39851507 synonymous SNV . 0 37 hm5C_associated_SNPs_29542 0 0 1 0 1 MACF1 chr1:39851601 5'GT 39851601 Upstream 95bp
chr4 57179504 57179504 1 + A T LUSC 57179501 + 57179481 57179521 41 AGCACAAGCTGGCTGTTAAGCCAAAAAAACAGAGGGTGTCA AGCACAAGCTGGCTGTTAAGCCATAAAAACAGAGGGTGTCA < 41bp 1 0.301260867954777 1 0.461826175451279 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57179501 chr4:57179504 stopgain 0.999 0 24 hm5C_associated_SNPs_29543 0 0 0 0 1 KIAA1211 chr4:57179545 5'GT 57179545 Upstream 42bp
chr4 57179503 57179503 1 + A T LUSC 57179501 + 57179481 57179521 41 AGCACAAGCTGGCTGTTAAGCCAAAAAAACAGAGGGTGTCA AGCACAAGCTGGCTGTTAAGCCTAAAAAACAGAGGGTGTCA < 41bp 1 0.255409341990836 1 0.152292251586914 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57179501 chr4:57179503 synonymous SNV . 0 23 hm5C_associated_SNPs_29545 0 0 0 0 1 KIAA1211 chr4:57179545 5'GT 57179545 Upstream 43bp
chr19 12014727 12014727 1 + T G LUSC 12014742 + 12014722 12014762 41 AAAAGTTGGAAAGACCAGAACATTGAATATGAGTACCAAAA AAAAGGTGGAAAGACCAGAACATTGAATATGAGTACCAAAA < 41bp 1 0.115722329264225 1 0.154506862163544 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF69 ENSG00000198429 CDS Human protein_coding chr19:12014742 chr19:12014727 nonsynonymous SNV 0.010 0 6 hm5C_associated_SNPs_29546 0 0 0 0 2 ZNF69 chr19:12014720 3'AG 12014720 Downstream 8bp
chr19 12014727 12014727 1 + T G LUSC 12014742 + 12014722 12014762 41 AAAAGTTGGAAAGACCAGAACATTGAATATGAGTACCAAAA AAAAGGTGGAAAGACCAGAACATTGAATATGAGTACCAAAA < 41bp 1 0.115722329264225 1 0.154506862163544 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF69 ENSG00000198429 CDS Human protein_coding chr19:12014742 chr19:12014727 nonsynonymous SNV 0.010 0 6 hm5C_associated_SNPs_29546 0 0 0 0 2 ZNF69 chr19:12014780 5'GT 12014780 Upstream 54bp
chr5 70818775 70818775 1 + A T LUSC 70818769 + 70818749 70818789 41 AAGAGCAATATCTCAATAAACTAACAAGGTAACATTTTATT AAGAGCAATATCTCAATAAACTAACATGGTAACATTTTATT < 41bp 1 0.104214515246169 1 0.0773312747478485 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BDP1 ENSG00000145734 CDS Human protein_coding chr5:70818769 chr5:70818775 nonsynonymous SNV 0.627 3 27 hm5C_associated_SNPs_29547 0 0 1 1 1 BDP1 chr5:70818776 5'GT 70818776 Upstream 2bp
chr15 63019354 63019354 1 + G C LUSC 63019352 + 63019332 63019372 41 GCTCCTCCATGGCACAGCTGCTGACCTGTGCTGCTCAAGGC GCTCCTCCATGGCACAGCTGCTCACCTGTGCTGCTCAAGGC < 41bp 1 0.100293240199025 1 0.111057847738266 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63019352 chr15:63019354 synonymous SNV . 0 23 hm5C_associated_SNPs_29548 0 0 0 0 2 TLN2 chr15:63019286 3'AG 63019286 Downstream 69bp
chr15 63019354 63019354 1 + G C LUSC 63019352 + 63019332 63019372 41 GCTCCTCCATGGCACAGCTGCTGACCTGTGCTGCTCAAGGC GCTCCTCCATGGCACAGCTGCTCACCTGTGCTGCTCAAGGC < 41bp 1 0.100293240199025 1 0.111057847738266 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63019352 chr15:63019354 synonymous SNV . 0 23 hm5C_associated_SNPs_29548 0 0 0 0 2 TLN2 chr15:63019388 5'GT 63019388 Upstream 35bp
chr16 67914814 67914814 1 + G A LUSC 67914803 + 67914783 67914823 41 CCCCTCCCTCCTGGAGGCAGCCTTGACCCAGGAGGCCTCGA CCCCTCCCTCCTGGAGGCAGCCTTGACCCAGAAGGCCTCGA < 41bp 1 0.0404748635442943 1 0.116934031248093 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914803 chr16:67914814 nonsynonymous SNV 0.808 2 32 hm5C_associated_SNPs_29550 0 0 1 0 1 EDC4 chr16:67914893 5'GT 67914893 Upstream 80bp
chr1 248039238 248039238 1 + G T LUSC 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGATTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA < 41bp 1 0.686439155062555 1 0.360578656196594 experiment 0.627121689874889 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039238 nonsynonymous SNV 0.001 0 8 hm5C_associated_SNPs_29551 0 0 0 0 1 TRIM58 chr1:248039202 3'AG 248039202 Downstream 37bp
chr3 172098776 172098776 1 + G A LUSC 172098759 + 172098739 172098779 41 GTGGATTTGTATTTCAGCACCTCGAGTAACACAGTTAGAAG GTGGATTTGTATTTCAGCACCTCGAGTAACACAGTTAAAAG < 41bp 1 0.557682772798231 1 0.711081624031067 experiment 0.884634454403538 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172098759 chr3:172098776 nonsynonymous SNV 0.999 1 38 hm5C_associated_SNPs_29556 0 0 0 0 1 FNDC3B chr3:172098756 3'AG 172098756 Downstream 21bp
chr3 172098776 172098776 1 + G A LUSC 172098770 + 172098750 172098790 41 TTTCAGCACCTCGAGTAACACAGTTAGAAGGAAATTCATGT TTTCAGCACCTCGAGTAACACAGTTAAAAGGAAATTCATGT < 41bp 1 0.104367069434109 1 0.486210852861404 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172098770 chr3:172098776 nonsynonymous SNV 0.999 1 27 hm5C_associated_SNPs_29557 0 0 0 0 1 FNDC3B chr3:172098756 3'AG 172098756 Downstream 21bp
chr7 142459707 142459707 1 + C T LUSC 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCTG < 41bp 1 0.661758210155566 1 0.299792140722275 experiment 0.676483579688869 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459707 nonsynonymous SNV 0.007 2 40 hm5C_associated_SNPs_29558 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 83bp
chr7 142459707 142459707 1 + C T LUSC 142459693 + 142459673 142459713 41 GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC GAATGAGCAGTTCATCAATGCAGCCAAGATCATCTGCCACC < 41bp 1 0.548314810416288 1 0.055424690246582 experiment 0.903370379167423 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459693 chr7:142459707 nonsynonymous SNV 0.007 2 35 hm5C_associated_SNPs_29559 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 83bp
chr7 142459707 142459707 1 + C T LUSC 142459696 + 142459676 142459716 41 TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC TGAGCAGTTCATCAATGCAGCCAAGATCATCTGCCACCCCC < 41bp 1 0.406324571229584 1 0.370669066905975 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459696 chr7:142459707 nonsynonymous SNV 0.007 2 32 hm5C_associated_SNPs_29560 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 83bp
chr7 142459707 142459707 1 + C T LUSC 142459703 + 142459683 142459723 41 TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGA TTCATCAATGCAGCCAAGATCATCTGCCACCCCCAATACGA < 41bp 1 0.385964893804363 1 0.0970388948917389 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459703 chr7:142459707 nonsynonymous SNV 0.007 2 25 hm5C_associated_SNPs_29561 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 83bp
chr7 142459707 142459707 1 + C T LUSC 142459706 + 142459686 142459726 41 ATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAG ATCAATGCAGCCAAGATCATCTGCCACCCCCAATACGACAG < 41bp 1 0.501179004794307 1 0.425574719905853 experiment 0.997641990411385 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459706 chr7:142459707 nonsynonymous SNV 0.007 2 22 hm5C_associated_SNPs_29562 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 83bp
chr7 142459707 142459707 1 + C T LUSC 142459709 + 142459689 142459729 41 AATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA AATGCAGCCAAGATCATCTGCCACCCCCAATACGACAGGAA < 41bp 1 0.104773753484887 1 0.089442253112793 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459709 chr7:142459707 nonsynonymous SNV 0.007 2 19 hm5C_associated_SNPs_29563 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 83bp
chr7 142459707 142459707 1 + C T LUSC 142459710 + 142459690 142459730 41 ATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG ATGCAGCCAAGATCATCTGCCACCCCCAATACGACAGGAAG < 41bp 1 0.237654604136094 1 0.146165400743484 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459710 chr7:142459707 nonsynonymous SNV 0.007 2 18 hm5C_associated_SNPs_29564 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 83bp
chr7 142459707 142459707 1 + C T LUSC 142459712 + 142459692 142459732 41 GCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC GCAGCCAAGATCATCTGCCACCCCCAATACGACAGGAAGAC < 41bp 1 0.161992476678598 1 0.113966912031174 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459712 chr7:142459707 nonsynonymous SNV 0.007 2 16 hm5C_associated_SNPs_29565 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 83bp
chr7 142459707 142459707 1 + C T LUSC 142459713 + 142459693 142459733 41 CAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT CAGCCAAGATCATCTGCCACCCCCAATACGACAGGAAGACT < 41bp 1 0.482583809916338 1 0.622278809547424 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459713 chr7:142459707 nonsynonymous SNV 0.007 2 15 hm5C_associated_SNPs_29566 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 83bp
chr7 142459707 142459707 1 + C T LUSC 142459714 + 142459694 142459734 41 AGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC AGCCAAGATCATCTGCCACCCCCAATACGACAGGAAGACTC < 41bp 1 0.489503191020522 1 0.186722964048386 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459714 chr7:142459707 nonsynonymous SNV 0.007 2 14 hm5C_associated_SNPs_29567 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 83bp
chr7 142459707 142459707 1 + C T LUSC 142459715 + 142459695 142459735 41 GCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCT GCCAAGATCATCTGCCACCCCCAATACGACAGGAAGACTCT < 41bp 1 0.235824232222396 1 0.436260938644409 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459715 chr7:142459707 nonsynonymous SNV 0.007 2 13 hm5C_associated_SNPs_29568 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 83bp
chr7 142459707 142459707 1 + C T LUSC 142459716 + 142459696 142459736 41 CCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCTG CCAAGATCATCTGCCACCCCCAATACGACAGGAAGACTCTG < 41bp 1 0.420717089559258 1 0.166636049747467 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459716 chr7:142459707 nonsynonymous SNV 0.007 2 12 hm5C_associated_SNPs_29569 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 83bp
chr4 3418748 3418748 1 + C T LUSC 3418764 + 3418744 3418784 41 GCAGCAGGTCCCCAGCAGCCCGGCTTCCAAGCACAGCCTCG GCAGTAGGTCCCCAGCAGCCCGGCTTCCAAGCACAGCCTCG < 41bp 1 0.581492365811878 1 0.281760782003403 experiment 0.837015268376243 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RGS12 ENSG00000159788 CDS Human protein_coding chr4:3418764 chr4:3418748 stopgain 0.927 1 5 hm5C_associated_SNPs_29570 0 0 0 0 1 RGS12 chr4:3418819 5'GT 3418819 Upstream 72bp
chr14 97002284 97002284 1 + G T LUSC 97002283 + 97002263 97002303 41 ATACCCACAACAGAACTCCACGTACAATGTGTCCGTTTCAA ATACCCACAACAGAACTCCACTTACAATGTGTCCGTTTCAA < 41bp 1 0.0761955353660848 1 0.0288387835025787 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97002283 chr14:97002284 synonymous SNV . 0 22 hm5C_associated_SNPs_29571 0 0 1 0 2 PAPOLA chr14:97002216 3'AG 97002216 Downstream 69bp
chr14 97002284 97002284 1 + G T LUSC 97002283 + 97002263 97002303 41 ATACCCACAACAGAACTCCACGTACAATGTGTCCGTTTCAA ATACCCACAACAGAACTCCACTTACAATGTGTCCGTTTCAA < 41bp 1 0.0761955353660848 1 0.0288387835025787 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97002283 chr14:97002284 synonymous SNV . 0 22 hm5C_associated_SNPs_29571 0 0 1 0 2 PAPOLA chr14:97002336 5'GT 97002336 Upstream 53bp
chr7 44836390 44836390 1 + G C LUSC 44836378 + 44836358 44836398 41 TCGACGGCGAGCCCTTGGGCCGCGTCTCCTTTGAGGTCGGG TCGACGGCGAGCCCTTGGGCCGCGTCTCCTTTCAGGTCGGG < 41bp 1 0.597330269853016 1 0.202985972166061 experiment 0.805339460293969 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPIA ENSG00000196262 CDS Human protein_coding chr7:44836378 chr7:44836390 nonsynonymous SNV 0.965 1 33 hm5C_associated_SNPs_29572 0 0 1 0 1 PPIA chr7:44836392 5'GT 44836392 Upstream 3bp
chr20 5163061 5163061 1 + C T LUSC 5163068 + 5163048 5163088 41 TACTGAGTCTGGTCAAGAAGCATTATCGACTGCAGTTCTAC TACTGAGTCTGGTTAAGAAGCATTATCGACTGCAGTTCTAC < 41bp 1 0.176488383913891 1 0.0352522730827332 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDS2 ENSG00000101290 CDS Human protein_coding chr20:5163068 chr20:5163061 synonymous SNV . 0 14 hm5C_associated_SNPs_29573 0 0 1 1 2 CDS2 chr20:5163033 3'AG 5163033 Downstream 29bp
chr20 5163061 5163061 1 + C T LUSC 5163068 + 5163048 5163088 41 TACTGAGTCTGGTCAAGAAGCATTATCGACTGCAGTTCTAC TACTGAGTCTGGTTAAGAAGCATTATCGACTGCAGTTCTAC < 41bp 1 0.176488383913891 1 0.0352522730827332 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDS2 ENSG00000101290 CDS Human protein_coding chr20:5163068 chr20:5163061 synonymous SNV . 0 14 hm5C_associated_SNPs_29573 0 0 1 1 2 CDS2 chr20:5163091 5'GT 5163091 Upstream 31bp
chr17 38416815 38416815 1 + G A LUSC 38416799 + 38416779 38416819 41 TCCTCCAGGCAAACACAGAGCAGCCCAAGCTGAGTAGAGAT TCCTCCAGGCAAACACAGAGCAGCCCAAGCTGAGTAAAGAT < 41bp 1 0.19874453398372 1 0.227862775325775 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control WIPF2 ENSG00000171475 CDS Human protein_coding chr17:38416799 chr17:38416815 nonsynonymous SNV 1.000 0 37 hm5C_associated_SNPs_29579 0 0 1 0 2 WIPF2 chr17:38416787 3'AG 38416787 Downstream 29bp
chr17 38416815 38416815 1 + G A LUSC 38416799 + 38416779 38416819 41 TCCTCCAGGCAAACACAGAGCAGCCCAAGCTGAGTAGAGAT TCCTCCAGGCAAACACAGAGCAGCCCAAGCTGAGTAAAGAT < 41bp 1 0.19874453398372 1 0.227862775325775 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control WIPF2 ENSG00000171475 CDS Human protein_coding chr17:38416799 chr17:38416815 nonsynonymous SNV 1.000 0 37 hm5C_associated_SNPs_29579 0 0 1 0 2 WIPF2 chr17:38416879 5'GT 38416879 Upstream 65bp
chr4 155665970 155665970 1 + C T LUSC 155665967 + 155665947 155665987 41 CTGTGGAACAACTGCGAGCACTTCGTGACCTACTGCAGATA CTGTGGAACAACTGCGAGCACTTTGTGACCTACTGCAGATA < 41bp 1 0.213964239482808 1 0.0282493233680725 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRAT ENSG00000121207 CDS Human protein_coding chr4:155665967 chr4:155665970 synonymous SNV . 0 24 hm5C_associated_SNPs_29580 0 0 0 0 1 LRAT chr4:155666018 5'GT 155666018 Upstream 49bp
chrX 47424408 47424408 1 + G T LUSC 47424395 + 47424375 47424415 41 TGGCATCAGGTACGGAAGACCTTCTTCAGCCTGGCGTTCTG TGGCATCAGGTACGGAAGACCTTCTTCAGCCTGTCGTTCTG < 41bp 1 0.31014858940381 1 0.338581085205078 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARAF ENSG00000078061 CDS Human protein_coding chrX:47424395 chrX:47424408 nonsynonymous SNV 0.995 2 34 hm5C_associated_SNPs_29583 0 0 1 1 2 ARAF chrX:47424384 3'AG 47424384 Downstream 25bp
chrX 47424408 47424408 1 + G T LUSC 47424395 + 47424375 47424415 41 TGGCATCAGGTACGGAAGACCTTCTTCAGCCTGGCGTTCTG TGGCATCAGGTACGGAAGACCTTCTTCAGCCTGTCGTTCTG < 41bp 1 0.31014858940381 1 0.338581085205078 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARAF ENSG00000078061 CDS Human protein_coding chrX:47424395 chrX:47424408 nonsynonymous SNV 0.995 2 34 hm5C_associated_SNPs_29583 0 0 1 1 2 ARAF chrX:47424497 5'GT 47424497 Upstream 90bp
chr1 110210760 110210760 1 + G A LUSC 110210743 + 110210723 110210763 41 ACAGCAACCAGCACCATGCCCATGACACTGGGGTACTGGAA ACAGCAACCAGCACCATGCCCATGACACTGGGGTACTAGAA < 41bp 1 0.640553731489837 1 0.138470262289047 experiment 0.718892537020326 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GSTM2 ENSG00000213366 CDS Human protein_coding chr1:110210743 chr1:110210760 stopgain 0.100 0 38 hm5C_associated_SNPs_29585 0 0 1 0 1 GSTM2 chr1:110210773 5'GT 110210773 Upstream 14bp
chr14 93125792 93125792 1 + C T LUSC 93125812 + 93125792 93125832 41 CTCCATGGCCCTCGGCAACCCAGGTCAGTGGGCAGCCGGGA TTCCATGGCCCTCGGCAACCCAGGTCAGTGGGCAGCCGGGA < 41bp 1 0.540412733834254 1 0.582142949104309 experiment 0.919174532331492 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93125812 chr14:93125792 synonymous SNV . 0 1 hm5C_associated_SNPs_29586 0 0 0 0 1 RIN3 chr14:93125814 5'GT 93125814 Upstream 23bp
chr5 150867564 150867564 1 + C T LUSC 150867545 + 150867525 150867565 41 ATGTCCTCTCTCCCTGCAGGCATCTTGGCCATCCTCATCCC ATGTCCTCTCTCCCTGCAGGCATCTTGGCCATCCTCATCTC < 41bp 1 0.203473702622203 1 0.026957631111145 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150867545 chr5:150867564 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_29588 0 0 0 0 1 SLC36A1 chr5:150867544 3'AG 150867544 Downstream 21bp
chr5 150867564 150867564 1 + C T LUSC 150867554 + 150867534 150867574 41 CTCCCTGCAGGCATCTTGGCCATCCTCATCCCCCGCCTGGA CTCCCTGCAGGCATCTTGGCCATCCTCATCTCCCGCCTGGA < 41bp 1 0.0729171319929254 1 0.0232105851173401 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150867554 chr5:150867564 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_29589 0 0 0 0 1 SLC36A1 chr5:150867544 3'AG 150867544 Downstream 21bp
chr1 878367 878367 1 + G A LUSC 878356 + 878336 878376 41 CAAGCTCCAGCTGGAGGGGCCGGCGCCGAGGGGAAGGGGCT CAAGCTCCAGCTGGAGGGGCCGGCGCCGAGGAGAAGGGGCT < 41bp 1 0.588491961657634 1 0.641819953918457 experiment 0.823016076684732 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:878356 chr1:878367 nonsynonymous SNV 0.882 1 32 hm5C_associated_SNPs_29591 0 0 1 0 1 SAMD11 chr1:878438 5'GT 878438 Upstream 72bp
chr22 18979458 18979458 1 + G A LUSC 18979466 + 18979446 18979486 41 AGATGGAGAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAAC AGATGGAGAAGCAAACCAAGCCTGTCTGTGTGTTCTGGAAC < 41bp 1 0.093394024631508 1 0.0525517165660858 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979466 chr22:18979458 . . 0 13 hm5C_associated_SNPs_29592 0 0 0 0 1 DGCR5 chr22:18979530 5'GT 18979530 Upstream 73bp
chr12 123102894 123102894 1 + C T LUSC 123102893 + 123102873 123102913 41 TGGACTTGTTTTCACAGGTTCCCTACTTCAGCAAAGCGTGG TGGACTTGTTTTCACAGGTTCTCTACTTCAGCAAAGCGTGG < 41bp 1 0.162324347925938 1 0.24571904540062 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123102893 chr12:123102894 nonsynonymous SNV 0.886 4 22 hm5C_associated_SNPs_29593 0 0 1 0 2 KNTC1 chr12:123102890 3'AG 123102890 Downstream 5bp
chr12 123102894 123102894 1 + C T LUSC 123102893 + 123102873 123102913 41 TGGACTTGTTTTCACAGGTTCCCTACTTCAGCAAAGCGTGG TGGACTTGTTTTCACAGGTTCTCTACTTCAGCAAAGCGTGG < 41bp 1 0.162324347925938 1 0.24571904540062 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123102893 chr12:123102894 nonsynonymous SNV 0.886 4 22 hm5C_associated_SNPs_29593 0 0 1 0 2 KNTC1 chr12:123102944 5'GT 123102944 Upstream 51bp
chr12 21205126 21205126 1 + C A LUSC 21205114 + 21205094 21205134 41 GATGAAAGTCAATGGGAACCCGTCTGTGGAAACAATGGAAT GATGAAAGTCAATGGGAACCCGTCTGTGGAAAAAATGGAAT < 41bp 1 0.390629881546839 1 0.153447806835175 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21205114 chr12:21205126 nonsynonymous SNV 0.444 0 33 hm5C_associated_SNPs_29594 0 0 0 0 2 SLCO1B7 chr12:21205030 3'AG 21205030 Downstream 97bp
chr12 21205126 21205126 1 + C A LUSC 21205114 + 21205094 21205134 41 GATGAAAGTCAATGGGAACCCGTCTGTGGAAACAATGGAAT GATGAAAGTCAATGGGAACCCGTCTGTGGAAAAAATGGAAT < 41bp 1 0.390629881546839 1 0.153447806835175 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21205114 chr12:21205126 nonsynonymous SNV 0.444 0 33 hm5C_associated_SNPs_29594 0 0 0 0 2 SLCO1B7 chr12:21205195 5'GT 21205195 Upstream 70bp
chr1 113238131 113238131 1 + C T LUSC 113238138 + 113238118 113238158 41 CCGGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGCCC CCGGGTCCACCTTTCTAGCTCCATCTACCGCCTCCTGGCCC < 41bp 1 0.0512943883310397 1 0.0568924248218536 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113238138 chr1:113238131 nonsynonymous SNV 0.996 1 14 hm5C_associated_SNPs_29595 0 0 1 0 2 MOV10 chr1:113238038 3'AG 113238038 Downstream 94bp
chr1 113238131 113238131 1 + C T LUSC 113238138 + 113238118 113238158 41 CCGGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGCCC CCGGGTCCACCTTTCTAGCTCCATCTACCGCCTCCTGGCCC < 41bp 1 0.0512943883310397 1 0.0568924248218536 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113238138 chr1:113238131 nonsynonymous SNV 0.996 1 14 hm5C_associated_SNPs_29595 0 0 1 0 2 MOV10 chr1:113238196 5'GT 113238196 Upstream 66bp
chr1 113238131 113238131 1 + C T LUSC 113238149 + 113238129 113238169 41 TTCCTAGCTCCATCTACCGCCTCCTGGCCCCCAGCAGGGAC TTTCTAGCTCCATCTACCGCCTCCTGGCCCCCAGCAGGGAC < 41bp 1 0.327410225945377 1 0.271610587835312 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113238149 chr1:113238131 nonsynonymous SNV 0.996 1 3 hm5C_associated_SNPs_29596 0 0 1 0 2 MOV10 chr1:113238038 3'AG 113238038 Downstream 94bp
chr1 113238131 113238131 1 + C T LUSC 113238149 + 113238129 113238169 41 TTCCTAGCTCCATCTACCGCCTCCTGGCCCCCAGCAGGGAC TTTCTAGCTCCATCTACCGCCTCCTGGCCCCCAGCAGGGAC < 41bp 1 0.327410225945377 1 0.271610587835312 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113238149 chr1:113238131 nonsynonymous SNV 0.996 1 3 hm5C_associated_SNPs_29596 0 0 1 0 2 MOV10 chr1:113238196 5'GT 113238196 Upstream 66bp
chr6 36566717 36566717 1 + C T LUSC 36566703 + 36566683 36566723 41 AAATCGTGGCCCACCTCCCTCTTGGGGTCGTCGCCCTCGAG AAATCGTGGCCCACCTCCCTCTTGGGGTCGTCGCTCTCGAG < 41bp 1 0.741968370098524 1 0.375621438026428 experiment 0.516063259802953 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36566703 chr6:36566717 nonsynonymous SNV 0.995 3 35 hm5C_associated_SNPs_29597 0 0 1 0 2 SRSF3 chr6:36566626 3'AG 36566626 Downstream 92bp
chr6 36566717 36566717 1 + C T LUSC 36566703 + 36566683 36566723 41 AAATCGTGGCCCACCTCCCTCTTGGGGTCGTCGCCCTCGAG AAATCGTGGCCCACCTCCCTCTTGGGGTCGTCGCTCTCGAG < 41bp 1 0.741968370098524 1 0.375621438026428 experiment 0.516063259802953 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36566703 chr6:36566717 nonsynonymous SNV 0.995 3 35 hm5C_associated_SNPs_29597 0 0 1 0 2 SRSF3 chr6:36566760 5'GT 36566760 Upstream 44bp
chr12 111744785 111744785 1 + G A LUSC 111744768 + 111744748 111744788 41 CTCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACA CTCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGAACA < 41bp 1 0.270913554945822 1 0.163336127996445 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744768 chr12:111744785 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_29598 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 61bp
chr12 111744785 111744785 1 + G A LUSC 111744769 + 111744749 111744789 41 TCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAG TCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGAACAG < 41bp 1 0.269887610638006 1 0.423202216625214 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744769 chr12:111744785 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_29599 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 61bp
chr12 111744785 111744785 1 + G A LUSC 111744777 + 111744757 111744797 41 TCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCC TCGGCTGGAGGCCGCGCTGGCCTCCAAGAACAGGGAGATCC < 41bp 1 0.0302510383705572 1 0.151288747787476 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744777 chr12:111744785 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_29600 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 61bp
chr12 111744785 111744785 1 + G A LUSC 111744778 + 111744758 111744798 41 CGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCT CGGCTGGAGGCCGCGCTGGCCTCCAAGAACAGGGAGATCCT < 41bp 1 0.530123994854167 1 0.971605896949768 experiment 0.939752010291667 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744778 chr12:111744785 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_29601 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 61bp
chr12 111744785 111744785 1 + G A LUSC 111744780 + 111744760 111744800 41 GCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGC GCTGGAGGCCGCGCTGGCCTCCAAGAACAGGGAGATCCTGC < 41bp 1 0.208909543352439 1 0.835913717746735 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744780 chr12:111744785 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_29602 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 61bp
chr12 111744785 111744785 1 + G A LUSC 111744781 + 111744761 111744801 41 CTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGCG CTGGAGGCCGCGCTGGCCTCCAAGAACAGGGAGATCCTGCG < 41bp 1 0.519492773338844 1 0.611843228340149 experiment 0.961014453322311 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744781 chr12:111744785 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_29603 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 61bp
chr19 6833249 6833249 1 + C T LUSC 6833263 + 6833243 6833283 41 GATGTTCTCCTTTGAGGAGACCACATCCTGCAAGGCCTGTC GATGTTTTCCTTTGAGGAGACCACATCCTGCAAGGCCTGTC < 41bp 1 0.396777041033155 1 0.195107340812683 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VAV1 ENSG00000141968 CDS Human protein_coding chr19:6833263 chr19:6833249 synonymous SNV . 0 7 hm5C_associated_SNPs_29604 0 0 0 0 2 VAV1 chr19:6833195 3'AG 6833195 Downstream 55bp
chr19 6833249 6833249 1 + C T LUSC 6833263 + 6833243 6833283 41 GATGTTCTCCTTTGAGGAGACCACATCCTGCAAGGCCTGTC GATGTTTTCCTTTGAGGAGACCACATCCTGCAAGGCCTGTC < 41bp 1 0.396777041033155 1 0.195107340812683 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VAV1 ENSG00000141968 CDS Human protein_coding chr19:6833263 chr19:6833249 synonymous SNV . 0 7 hm5C_associated_SNPs_29604 0 0 0 0 2 VAV1 chr19:6833296 5'GT 6833296 Upstream 48bp
chrX 64956717 64956717 1 + T A LUSC 64956736 + 64956716 64956756 41 TTGAACGGGAGAAGGAGGAGCTGATGGAGAGGCTGAAGCAG TAGAACGGGAGAAGGAGGAGCTGATGGAGAGGCTGAAGCAG < 41bp 1 0.339510638583975 1 0.319688260555267 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956736 chrX:64956717 synonymous SNV . 0 2 hm5C_associated_SNPs_29605 0 0 1 0 2 MSN chrX:64956657 3'AG 64956657 Downstream 61bp
chrX 64956717 64956717 1 + T A LUSC 64956736 + 64956716 64956756 41 TTGAACGGGAGAAGGAGGAGCTGATGGAGAGGCTGAAGCAG TAGAACGGGAGAAGGAGGAGCTGATGGAGAGGCTGAAGCAG < 41bp 1 0.339510638583975 1 0.319688260555267 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956736 chrX:64956717 synonymous SNV . 0 2 hm5C_associated_SNPs_29605 0 0 1 0 2 MSN chrX:64956787 5'GT 64956787 Upstream 71bp
chr17 29857360 29857360 1 + G T LUSC 29857365 + 29857345 29857385 41 AGAATTATAAGCTGCGGGATCAGAACGACGACTTGAATGGG AGAATTATAAGCTGCTGGATCAGAACGACGACTTGAATGGG < 41bp 1 0.363504170548401 1 0.613048017024994 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RAB11FIP4 ENSG00000131242 CDS Human protein_coding chr17:29857365 chr17:29857360 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_29606 0 0 1 0 1 RAB11FIP4 chr17:29857344 3'AG 29857344 Downstream 17bp
chr11 6629297 6629297 1 + C G LUSC 6629293 + 6629273 6629313 41 AAGGGACGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCC AAGGGACGATCATGGCTTCTCCCCGTTGCACTGGGCCTGCC < 41bp 1 0.553150580240017 1 0.383931756019592 experiment 0.893698839519966 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6629293 chr11:6629297 synonymous SNV . 0 25 hm5C_associated_SNPs_29608 0 0 1 0 1 ILK chr11:6629276 3'AG 6629276 Downstream 22bp
chr11 6629297 6629297 1 + C G LUSC 6629294 + 6629274 6629314 41 AGGGACGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCCG AGGGACGATCATGGCTTCTCCCCGTTGCACTGGGCCTGCCG < 41bp 1 0.343220885566979 1 0.121320724487305 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6629294 chr11:6629297 synonymous SNV . 0 24 hm5C_associated_SNPs_29609 0 0 1 0 1 ILK chr11:6629276 3'AG 6629276 Downstream 22bp
chr16 28847784 28847784 1 + G T LUSC 28847774 + 28847754 28847794 41 CCCACTGCCTCCCCAGCTCTCAGTGACCCCGACTGTCTCCT CCCACTGCCTCCCCAGCTCTCAGTGACCCCTACTGTCTCCT < 41bp 1 0.576624949944871 1 0.743937075138092 experiment 0.846750100110257 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ATXN2L ENSG00000168488 CDS Human antisense chr16:28847774 chr16:28847784 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_29610 0 0 1 0 1 ATXN2L chr16:28847811 5'GT 28847811 Upstream 28bp
chr16 12618661 12618661 1 + A G LUSC 12618659 + 12618639 12618679 41 CCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC CCCCGAGTTCGCTGCCAGCCCCGAGAAGGAGACCCTCATCC < 41bp 1 0.256635803704083 1 0.530088841915131 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12618659 chr16:12618661 nonsynonymous SNV 0.973 0 23 hm5C_associated_SNPs_29612 0 0 0 0 1 SNX29 chr16:12618698 5'GT 12618698 Upstream 38bp
chr10 6265947 6265947 1 + C T LUSC 6265930 + 6265910 6265950 41 TTCAATTTCAGAGGAGATGCCCTACCTGAAATGCCCTCTTC TTCAATTTCAGAGGAGATGCCCTACCTGAAATGCCCTTTTC < 41bp 1 0.0340215814792394 1 0.0736582279205322 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6265930 chr10:6265947 nonsynonymous SNV 0.603 4 38 hm5C_associated_SNPs_29613 0 0 1 0 2 PFKFB3 chr10:6265921 3'AG 6265921 Downstream 27bp
chr10 6265947 6265947 1 + C T LUSC 6265930 + 6265910 6265950 41 TTCAATTTCAGAGGAGATGCCCTACCTGAAATGCCCTCTTC TTCAATTTCAGAGGAGATGCCCTACCTGAAATGCCCTTTTC < 41bp 1 0.0340215814792394 1 0.0736582279205322 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6265930 chr10:6265947 nonsynonymous SNV 0.603 4 38 hm5C_associated_SNPs_29613 0 0 1 0 2 PFKFB3 chr10:6265983 5'GT 6265983 Upstream 37bp
chr11 65632560 65632560 1 + C T LUSC 65632544 + 65632524 65632564 41 GGGAACCCTGAATCAGGGGCCATGACCTCTCCAAACCCTCT GGGAACCCTGAATCAGGGGCCATGACCTCTCCAAACTCTCT < 41bp 1 0.207596598598358 1 0.112295538187027 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MUS81 ENSG00000172732 CDS Human protein_coding chr11:65632544 chr11:65632560 nonsynonymous SNV 0.744 1 37 hm5C_associated_SNPs_29614 0 0 1 0 2 MUS81 chr11:65632488 3'AG 65632488 Downstream 73bp
chr11 65632560 65632560 1 + C T LUSC 65632544 + 65632524 65632564 41 GGGAACCCTGAATCAGGGGCCATGACCTCTCCAAACCCTCT GGGAACCCTGAATCAGGGGCCATGACCTCTCCAAACTCTCT < 41bp 1 0.207596598598358 1 0.112295538187027 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MUS81 ENSG00000172732 CDS Human protein_coding chr11:65632544 chr11:65632560 nonsynonymous SNV 0.744 1 37 hm5C_associated_SNPs_29614 0 0 1 0 2 MUS81 chr11:65632616 5'GT 65632616 Upstream 57bp
chr8 142176444 142176444 1 + C T LUSC 142176432 + 142176412 142176452 41 TGCCATGCCTGAGCTGGCACCCAGGAACTCCTCGCTCCGGC TGCCATGCCTGAGCTGGCACCCAGGAACTCCTTGCTCCGGC < 41bp 1 0.45974036406908 1 0.879493117332458 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DENND3 ENSG00000105339 CDS Human protein_coding chr8:142176432 chr8:142176444 nonsynonymous SNV 0.172 1 33 hm5C_associated_SNPs_29615 0 0 0 0 1 DENND3 chr8:142176488 5'GT 142176488 Upstream 45bp
chrX 37984564 37984564 1 + G A LUSC 37984551 + 37984531 37984571 41 GATTGTTTTTTCTCATGCAGCTACCTGCTCCCTGATGATAG GATTGTTTTTTCTCATGCAGCTACCTGCTCCCTAATGATAG < 41bp 1 0.0967601155026433 1 0.116215795278549 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37984551 chrX:37984564 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_29616 0 0 0 0 1 SYTL5 chrX:37984551 3'AG 37984551 Downstream 14bp
chr12 79689885 79689885 1 + G A LUSC 79689904 + 79689884 79689924 41 CGCCTTGGACATGGGGGGCACATCTGATCCTTACGTGAAAG CACCTTGGACATGGGGGGCACATCTGATCCTTACGTGAAAG < 41bp 1 0.170811932923981 1 0.205603539943695 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYT1 ENSG00000067715 CDS Human protein_coding chr12:79689904 chr12:79689885 nonsynonymous SNV 0.964 2 2 hm5C_associated_SNPs_29617 0 0 0 0 1 SYT1 chr12:79689849 3'AG 79689849 Downstream 37bp
chr6 7572250 7572250 1 + A T LUSC 7572244 + 7572224 7572264 41 AGGATGACTCTCAAAAACCTCCCTCTAGCAGACCAGGGATC AGGATGACTCTCAAAAACCTCCCTCTTGCAGACCAGGGATC < 41bp 1 0.0436370583322328 1 0.0381768345832825 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572244 chr6:7572250 synonymous SNV . 0 27 hm5C_associated_SNPs_29618 0 0 1 0 1 DSP chr6:7572301 5'GT 7572301 Upstream 52bp
chr12 112926259 112926259 1 + C T LUSC 112926274 + 112926254 112926294 41 ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTTAT ATTGGTCGGACAGGGACGTTCATTGTGATTGATATTCTTAT < 41bp 1 0.16704125267352 1 0.0265071988105774 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926274 chr12:112926259 synonymous SNV . 0 6 hm5C_associated_SNPs_29619 0 0 1 0 2 PTPN11 chr12:112926247 3'AG 112926247 Downstream 13bp
chr12 112926259 112926259 1 + C T LUSC 112926274 + 112926254 112926294 41 ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTTAT ATTGGTCGGACAGGGACGTTCATTGTGATTGATATTCTTAT < 41bp 1 0.16704125267352 1 0.0265071988105774 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926274 chr12:112926259 synonymous SNV . 0 6 hm5C_associated_SNPs_29619 0 0 1 0 2 PTPN11 chr12:112926314 5'GT 112926314 Upstream 56bp
chr16 88781041 88781041 1 + G A LUSC 88781052 + 88781032 88781072 41 TCTCTCCCAGATGCAGTCACCCATCCCCCTGACTGAGACCC TCTCTCCCAAATGCAGTCACCCATCCCCCTGACTGAGACCC < 41bp 1 0.0396104573919508 1 0.110013276338577 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781052 chr16:88781041 synonymous SNV . 0 10 hm5C_associated_SNPs_29622 0 0 1 0 1 CTU2 chr16:88780995 3'AG 88780995 Downstream 47bp
chr1 44071241 44071241 1 + G T LUSC 44071222 + 44071202 44071242 41 GGTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGG GGTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGTG < 41bp 1 0.0910507091202528 1 0.035233199596405 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44071222 chr1:44071241 nonsynonymous SNV 0.785 2 40 hm5C_associated_SNPs_29623 0 0 1 0 2 PTPRF chr1:44071200 3'AG 44071200 Downstream 42bp
chr1 44071241 44071241 1 + G T LUSC 44071222 + 44071202 44071242 41 GGTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGG GGTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGTG < 41bp 1 0.0910507091202528 1 0.035233199596405 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44071222 chr1:44071241 nonsynonymous SNV 0.785 2 40 hm5C_associated_SNPs_29623 0 0 1 0 2 PTPRF chr1:44071293 5'GT 44071293 Upstream 53bp
chr1 44071241 44071241 1 + G T LUSC 44071223 + 44071203 44071243 41 GTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGGA GTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGTGA < 41bp 1 0.050551946011051 1 0.0714450478553772 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44071223 chr1:44071241 nonsynonymous SNV 0.785 2 39 hm5C_associated_SNPs_29624 0 0 1 0 2 PTPRF chr1:44071200 3'AG 44071200 Downstream 42bp
chr1 44071241 44071241 1 + G T LUSC 44071223 + 44071203 44071243 41 GTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGGA GTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGTGA < 41bp 1 0.050551946011051 1 0.0714450478553772 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44071223 chr1:44071241 nonsynonymous SNV 0.785 2 39 hm5C_associated_SNPs_29624 0 0 1 0 2 PTPRF chr1:44071293 5'GT 44071293 Upstream 53bp
chr7 77539631 77539631 1 + A G LUSC 77539642 + 77539622 77539662 41 AGATAACACACAAGAGGGAGCAGTTCAGAACCACGGTACAA AGATAACACGCAAGAGGGAGCAGTTCAGAACCACGGTACAA < 41bp 1 0.28548608332486 1 0.278238534927368 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHTF2 ENSG00000006576 CDS Human protein_coding chr7:77539642 chr7:77539631 synonymous SNV . 0 10 hm5C_associated_SNPs_29625 0 0 1 0 1 PHTF2 chr7:77539562 3'AG 77539562 Downstream 70bp
chr8 48874090 48874090 1 + G T LUSC 48874104 + 48874084 48874124 41 GAGGATGCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA GAGGATTCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA < 41bp 1 0.131029166784271 1 0.085466057062149 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874104 chr8:48874090 nonsynonymous SNV 0.218 0 7 hm5C_associated_SNPs_29626 0 0 1 1 1 MCM4 chr8:48874076 3'AG 48874076 Downstream 15bp
chr10 43604511 43604511 1 + G T LUSC 43604501 + 43604481 43604521 41 CTGGTTCTCAACCGGAACCTCTCCATCTCGGAGAACCGCAC CTGGTTCTCAACCGGAACCTCTCCATCTCGTAGAACCGCAC < 41bp 1 0.624768546229765 1 0.962962031364441 experiment 0.75046290754047 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RET ENSG00000165731 CDS Human protein_coding chr10:43604501 chr10:43604511 stopgain 0.283 1 31 hm5C_associated_SNPs_29629 0 0 1 0 1 RET chr10:43604479 3'AG 43604479 Downstream 33bp
chr11 61632657 61632657 1 + C G LUSC 61632668 + 61632648 61632688 41 CAACTTACACAAGATCGCCCCGCTGGTGAAGTCTCTATGTG CAACTTACAGAAGATCGCCCCGCTGGTGAAGTCTCTATGTG < 41bp 1 0.369562681776624 1 0.167953670024872 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61632668 chr11:61632657 nonsynonymous SNV 0.189 0 10 hm5C_associated_SNPs_29631 0 0 1 0 2 FADS2 chr11:61632624 3'AG 61632624 Downstream 34bp
chr11 61632657 61632657 1 + C G LUSC 61632668 + 61632648 61632688 41 CAACTTACACAAGATCGCCCCGCTGGTGAAGTCTCTATGTG CAACTTACAGAAGATCGCCCCGCTGGTGAAGTCTCTATGTG < 41bp 1 0.369562681776624 1 0.167953670024872 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61632668 chr11:61632657 nonsynonymous SNV 0.189 0 10 hm5C_associated_SNPs_29631 0 0 1 0 2 FADS2 chr11:61632749 5'GT 61632749 Upstream 93bp
chr11 61632657 61632657 1 + C G LUSC 61632670 + 61632650 61632690 41 ACTTACACAAGATCGCCCCGCTGGTGAAGTCTCTATGTGCC ACTTACAGAAGATCGCCCCGCTGGTGAAGTCTCTATGTGCC < 41bp 1 0.611377354051996 1 0.483208924531937 experiment 0.777245291896008 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61632670 chr11:61632657 nonsynonymous SNV 0.189 0 8 hm5C_associated_SNPs_29632 0 0 1 0 2 FADS2 chr11:61632624 3'AG 61632624 Downstream 34bp
chr11 61632657 61632657 1 + C G LUSC 61632670 + 61632650 61632690 41 ACTTACACAAGATCGCCCCGCTGGTGAAGTCTCTATGTGCC ACTTACAGAAGATCGCCCCGCTGGTGAAGTCTCTATGTGCC < 41bp 1 0.611377354051996 1 0.483208924531937 experiment 0.777245291896008 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61632670 chr11:61632657 nonsynonymous SNV 0.189 0 8 hm5C_associated_SNPs_29632 0 0 1 0 2 FADS2 chr11:61632749 5'GT 61632749 Upstream 93bp
chr5 148712275 148712275 1 + C G LUSC 148712291 + 148712271 148712311 41 GGCTCTGGAAGAAGCCGTGGCCACCCTGGAAGCTCAGTGTC GGCTGTGGAAGAAGCCGTGGCCACCCTGGAAGCTCAGTGTC < 41bp 1 0.124707470497257 1 0.0725494623184204 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148712291 chr5:148712275 nonsynonymous SNV 0.908 1 5 hm5C_associated_SNPs_29635 0 0 0 0 1 AFAP1L1 chr5:148712258 3'AG 148712258 Downstream 18bp
chr7 44796711 44796711 1 + C T LUSC 44796719 + 44796699 44796739 41 GGCGTGTACAGCCGCGGGGGCTACCCTGGGGCCCCCGGCTT GGCGTGTACAGCTGCGGGGGCTACCCTGGGGCCCCCGGCTT < 41bp 1 0.293563619543049 1 0.11321297287941 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44796719 chr7:44796711 nonsynonymous SNV 0.793 4 13 hm5C_associated_SNPs_29637 0 0 1 0 2 ZMIZ2 chr7:44796642 3'AG 44796642 Downstream 70bp
chr7 44796711 44796711 1 + C T LUSC 44796719 + 44796699 44796739 41 GGCGTGTACAGCCGCGGGGGCTACCCTGGGGCCCCCGGCTT GGCGTGTACAGCTGCGGGGGCTACCCTGGGGCCCCCGGCTT < 41bp 1 0.293563619543049 1 0.11321297287941 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44796719 chr7:44796711 nonsynonymous SNV 0.793 4 13 hm5C_associated_SNPs_29637 0 0 1 0 2 ZMIZ2 chr7:44796748 5'GT 44796748 Upstream 38bp
chr19 54649754 54649754 1 + C T LUSC 54649752 + 54649732 54649772 41 ACCACCTCCAGCTCTCCCATCCCGCCCAGCCCAGCCAACTG ACCACCTCCAGCTCTCCCATCCTGCCCAGCCCAGCCAACTG < 41bp 1 0.0858505121021195 1 0.518778920173645 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54649752 chr19:54649754 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_29638 0 0 1 0 1 CNOT3 chr19:54649779 5'GT 54649779 Upstream 26bp
chr7 129950677 129950677 1 + G C LUSC 129950671 + 129950651 129950691 41 GCTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTG GCTCCGAAGTGTACCATGGACCCCACCCCAATTCGGAAGTG < 41bp 1 0.537914295569734 1 0.0494748950004578 experiment 0.924171408860532 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950671 chr7:129950677 nonsynonymous SNV 0.786 0 27 hm5C_associated_SNPs_29639 0 0 0 0 1 CPA4 chr7:129950627 3'AG 129950627 Downstream 51bp
chr7 129950677 129950677 1 + G C LUSC 129950672 + 129950652 129950692 41 CTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTGG CTCCGAAGTGTACCATGGACCCCACCCCAATTCGGAAGTGG < 41bp 1 0.0624177677573814 1 0.0377354025840759 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950672 chr7:129950677 nonsynonymous SNV 0.786 0 26 hm5C_associated_SNPs_29640 0 0 0 0 1 CPA4 chr7:129950627 3'AG 129950627 Downstream 51bp
chr6 29911963 29911963 1 + G A LUSC 29911960 + 29911940 29911980 41 CATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCC CATGAGGCCACCCTGAGGTGCTGAGCCCTGGGCTTCTACCC < 41bp 1 0.525919600668168 1 0.0866284966468811 experiment 0.948160798663664 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911960 chr6:29911963 stopgain 0.085 0 24 hm5C_associated_SNPs_29641 0 0 0 0 1 HLA-A chr6:29911899 3'AG 29911899 Downstream 65bp
chr3 47382151 47382151 1 + C T LUSC 47382146 + 47382126 47382166 41 TCCCTCAGCTCCGTGGAGACCTACTCACCTGAGACGGACAA TCCCTCAGCTCCGTGGAGACCTACTTACCTGAGACGGACAA < 41bp 1 0.391977597434814 1 0.280788242816925 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47382146 chr3:47382151 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_29642 0 0 1 0 2 KLHL18 chr3:47382062 3'AG 47382062 Downstream 90bp
chr3 47382151 47382151 1 + C T LUSC 47382146 + 47382126 47382166 41 TCCCTCAGCTCCGTGGAGACCTACTCACCTGAGACGGACAA TCCCTCAGCTCCGTGGAGACCTACTTACCTGAGACGGACAA < 41bp 1 0.391977597434814 1 0.280788242816925 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47382146 chr3:47382151 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_29642 0 0 1 0 2 KLHL18 chr3:47382166 5'GT 47382166 Upstream 16bp
chr11 45923588 45923588 1 + C A LUSC 45923602 + 45923582 45923622 41 GTGTCTCGATCATCCTCACCCCTGAAGACAGGTAAGTCAGG GTGTCTAGATCATCCTCACCCCTGAAGACAGGTAAGTCAGG < 41bp 1 0.145389035190418 1 0.382744669914246 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923602 chr11:45923588 synonymous SNV . 0 7 hm5C_associated_SNPs_29643 0 0 0 0 2 MAPK8IP1 chr11:45923531 3'AG 45923531 Downstream 58bp
chr11 45923588 45923588 1 + C A LUSC 45923602 + 45923582 45923622 41 GTGTCTCGATCATCCTCACCCCTGAAGACAGGTAAGTCAGG GTGTCTAGATCATCCTCACCCCTGAAGACAGGTAAGTCAGG < 41bp 1 0.145389035190418 1 0.382744669914246 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923602 chr11:45923588 synonymous SNV . 0 7 hm5C_associated_SNPs_29643 0 0 0 0 2 MAPK8IP1 chr11:45923612 5'GT 45923612 Upstream 25bp
chr5 153760011 153760011 1 + G A LUSC 153760010 + 153759990 153760030 41 ATCTCTTGGCTTCTTCAGACCGCATTGCTCGGAACCGCAAG ATCTCTTGGCTTCTTCAGACCACATTGCTCGGAACCGCAAG < 41bp 1 0.164119243544086 1 0.109533876180649 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153760010 chr5:153760011 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_29644 0 0 1 0 1 GALNT10 chr5:153760008 3'AG 153760008 Downstream 4bp
chr5 153760011 153760011 1 + G A LUSC 153760024 + 153760004 153760044 41 TCAGACCGCATTGCTCGGAACCGCAAGACCATTGTGTGCCC TCAGACCACATTGCTCGGAACCGCAAGACCATTGTGTGCCC < 41bp 1 0.35823072461201 1 0.125478118658066 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153760024 chr5:153760011 nonsynonymous SNV 0.996 2 8 hm5C_associated_SNPs_29645 0 0 1 0 1 GALNT10 chr5:153760008 3'AG 153760008 Downstream 4bp
chr17 76060982 76060982 1 + G A LUSC 76061001 + 76060981 76061021 41 TGGCGCACCTGTTGCTGCCTCAGCCCTGTGCAAACCAGGTA TAGCGCACCTGTTGCTGCCTCAGCCCTGTGCAAACCAGGTA < 41bp 1 0.197256923680458 1 0.402330040931702 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TNRC6C ENSG00000078687 CDS Human protein_coding chr17:76061001 chr17:76060982 nonsynonymous SNV 0.014 0 2 hm5C_associated_SNPs_29647 0 0 1 0 1 TNRC6C chr17:76061018 5'GT 76061018 Upstream 37bp
chr2 121554949 121554949 1 + G T LUSC 121554962 + 121554942 121554982 41 AAAAGTGGGATCCTGGAGGCCGCTGGCTTCCCCGACCCGGG AAAAGTGTGATCCTGGAGGCCGCTGGCTTCCCCGACCCGGG < 41bp 1 0.27582556405687 1 0.524482309818268 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GLI2 ENSG00000074047 CDS Human protein_coding chr2:121554962 chr2:121554949 nonsynonymous SNV 0.858 0 8 hm5C_associated_SNPs_29648 0 0 0 0 1 GLI2 chr2:121555044 5'GT 121555044 Upstream 96bp
chr7 98563377 98563377 1 + G C LUSC 98563380 + 98563360 98563400 41 ACGCGCCTGGCAGTGATGAGCATGGAGATGCGGAAGAACTT ACGCGCCTGGCAGTGATCAGCATGGAGATGCGGAAGAACTT < 41bp 1 0.184097922105349 1 0.409989058971405 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98563380 chr7:98563377 nonsynonymous SNV 0.997 3 18 hm5C_associated_SNPs_29656 0 0 1 0 1 TRRAP chr7:98563319 3'AG 98563319 Downstream 59bp
chr6 80744986 80744986 1 + A T LUSC 80744989 + 80744969 80745009 41 TTGTTTAATTGCAGTGAAATCACGGACCAGTACATCTACAT TTGTTTAATTGCAGTGATATCACGGACCAGTACATCTACAT < 41bp 1 0.787058044714747 1 0.794852018356323 experiment 0.425883910570506 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTK ENSG00000112742 CDS Human protein_coding chr6:80744989 chr6:80744986 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_29657 0 0 1 0 1 TTK chr6:80744983 3'AG 80744983 Downstream 4bp
chr3 148562265 148562265 1 + G A LUSC 148562266 + 148562246 148562286 41 CTTCATAATTCACATACAGGCTGTTCGTACCTATGGACGTG CTTCATAATTCACATACAGACTGTTCGTACCTATGGACGTG < 41bp 1 0.156201844229747 1 0.0159445106983185 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562266 chr3:148562265 nonsynonymous SNV 0.791 4 20 hm5C_associated_SNPs_29658 0 0 0 0 1 CPB1 chr3:148562265 3'AG 148562265 Downstream 1bp
chr3 148562265 148562265 1 + G A LUSC 148562271 + 148562251 148562291 41 TAATTCACATACAGGCTGTTCGTACCTATGGACGTGAGATC TAATTCACATACAGACTGTTCGTACCTATGGACGTGAGATC < 41bp 1 0.077090618725135 1 0.0484894812107086 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562271 chr3:148562265 nonsynonymous SNV 0.791 4 15 hm5C_associated_SNPs_29659 0 0 0 0 1 CPB1 chr3:148562265 3'AG 148562265 Downstream 1bp
chr3 148562265 148562265 1 + G A LUSC 148562275 + 148562255 148562295 41 TCACATACAGGCTGTTCGTACCTATGGACGTGAGATCCAAG TCACATACAGACTGTTCGTACCTATGGACGTGAGATCCAAG < 41bp 1 0.0413391080677408 1 0.025677502155304 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562275 chr3:148562265 nonsynonymous SNV 0.791 4 11 hm5C_associated_SNPs_29660 0 0 0 0 1 CPB1 chr3:148562265 3'AG 148562265 Downstream 1bp
chr3 148562265 148562265 1 + G A LUSC 148562276 + 148562256 148562296 41 CACATACAGGCTGTTCGTACCTATGGACGTGAGATCCAAGT CACATACAGACTGTTCGTACCTATGGACGTGAGATCCAAGT < 41bp 1 0.244709761383916 1 0.0757855772972107 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562276 chr3:148562265 nonsynonymous SNV 0.791 4 10 hm5C_associated_SNPs_29661 0 0 0 0 1 CPB1 chr3:148562265 3'AG 148562265 Downstream 1bp
chr3 148562265 148562265 1 + G A LUSC 148562283 + 148562263 148562303 41 AGGCTGTTCGTACCTATGGACGTGAGATCCAAGTGACAGAG AGACTGTTCGTACCTATGGACGTGAGATCCAAGTGACAGAG < 41bp 1 0.684490378916094 1 0.207981109619141 experiment 0.631019242167812 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562283 chr3:148562265 nonsynonymous SNV 0.791 4 3 hm5C_associated_SNPs_29662 0 0 0 0 1 CPB1 chr3:148562265 3'AG 148562265 Downstream 1bp
chrX 41201857 41201857 1 + G A LUSC 41201839 + 41201819 41201859 41 TTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATCAGAT TTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATCAAAT < 41bp 1 0.667157477256645 1 0.151583194732666 experiment 0.66568504548671 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201839 chrX:41201857 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_29664 0 0 1 0 1 DDX3X chrX:41201906 5'GT 41201906 Upstream 50bp
chrX 41201857 41201857 1 + G A LUSC 41201850 + 41201830 41201870 41 GGAAACAGTCGCTGGTGTGACAAATCAGATGAAGATGATTG GGAAACAGTCGCTGGTGTGACAAATCAAATGAAGATGATTG < 41bp 1 0.271820933206589 1 0.629812896251678 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201850 chrX:41201857 nonsynonymous SNV 1.000 0 28 hm5C_associated_SNPs_29665 0 0 1 0 1 DDX3X chrX:41201906 5'GT 41201906 Upstream 50bp
chrX 41201857 41201857 1 + G A LUSC 41201855 + 41201835 41201875 41 CAGTCGCTGGTGTGACAAATCAGATGAAGATGATTGGTCAA CAGTCGCTGGTGTGACAAATCAAATGAAGATGATTGGTCAA < 41bp 1 0.615534994738788 1 0.712692141532898 experiment 0.768930010522423 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201855 chrX:41201857 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_29666 0 0 1 0 1 DDX3X chrX:41201906 5'GT 41201906 Upstream 50bp
chr12 57911120 57911120 1 + C T LUSC 57911135 + 57911115 57911155 41 CAGGTCCTCATACCAGGCTTCCAGCTCCCAGCTGGACAGTG CAGGTTCTCATACCAGGCTTCCAGCTCCCAGCTGGACAGTG < 41bp 1 0.133246800422113 1 0.0394071042537689 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDIT3 ENSG00000175197 CDS Human protein_coding chr12:57911135 chr12:57911120 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_29669 0 0 0 0 1 DDIT3 chr12:57911066 3'AG 57911066 Downstream 55bp
chr12 57911120 57911120 1 + C T LUSC 57911139 + 57911119 57911159 41 TCCTCATACCAGGCTTCCAGCTCCCAGCTGGACAGTGTCCC TTCTCATACCAGGCTTCCAGCTCCCAGCTGGACAGTGTCCC < 41bp 1 0.289280790861003 1 0.167968183755875 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDIT3 ENSG00000175197 CDS Human protein_coding chr12:57911139 chr12:57911120 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_29670 0 0 0 0 1 DDIT3 chr12:57911066 3'AG 57911066 Downstream 55bp
chr1 155032736 155032736 1 + G T LUSC 155032751 + 155032731 155032771 41 GTCCTGGTGATGCTTGGTGCCAGCTACTGGTACCGTGCCCG GTCCTTGTGATGCTTGGTGCCAGCTACTGGTACCGTGCCCG < 41bp 1 0.558185173328736 1 0.59773725271225 experiment 0.883629653342529 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155032751 chr1:155032736 synonymous SNV . 0 6 hm5C_associated_SNPs_29672 0 0 1 0 2 ADAM15 chr1:155032681 3'AG 155032681 Downstream 56bp
chr1 155032736 155032736 1 + G T LUSC 155032751 + 155032731 155032771 41 GTCCTGGTGATGCTTGGTGCCAGCTACTGGTACCGTGCCCG GTCCTTGTGATGCTTGGTGCCAGCTACTGGTACCGTGCCCG < 41bp 1 0.558185173328736 1 0.59773725271225 experiment 0.883629653342529 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155032751 chr1:155032736 synonymous SNV . 0 6 hm5C_associated_SNPs_29672 0 0 1 0 2 ADAM15 chr1:155032819 5'GT 155032819 Upstream 84bp
chr2 160053216 160053216 1 + C T LUSC 160053224 + 160053204 160053244 41 CTTGTGAGTGGTCGCCGGGTCCTCCCCAGCCAGGCACCCTG CTTGTGAGTGGTTGCCGGGTCCTCCCCAGCCAGGCACCCTG < 41bp 1 0.0797046791415998 1 0.05685755610466 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160053224 chr2:160053216 nonsynonymous SNV 0.609 0 13 hm5C_associated_SNPs_29673 0 0 1 0 2 TANC1 chr2:160053119 3'AG 160053119 Downstream 98bp
chr2 160053216 160053216 1 + C T LUSC 160053224 + 160053204 160053244 41 CTTGTGAGTGGTCGCCGGGTCCTCCCCAGCCAGGCACCCTG CTTGTGAGTGGTTGCCGGGTCCTCCCCAGCCAGGCACCCTG < 41bp 1 0.0797046791415998 1 0.05685755610466 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160053224 chr2:160053216 nonsynonymous SNV 0.609 0 13 hm5C_associated_SNPs_29673 0 0 1 0 2 TANC1 chr2:160053304 5'GT 160053304 Upstream 89bp
chr2 160053216 160053216 1 + C T LUSC 160053230 + 160053210 160053250 41 AGTGGTCGCCGGGTCCTCCCCAGCCAGGCACCCTGAGGAAG AGTGGTTGCCGGGTCCTCCCCAGCCAGGCACCCTGAGGAAG < 41bp 1 0.524256791962174 1 0.569540917873383 experiment 0.951486416075653 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160053230 chr2:160053216 nonsynonymous SNV 0.609 0 7 hm5C_associated_SNPs_29674 0 0 1 0 2 TANC1 chr2:160053119 3'AG 160053119 Downstream 98bp
chr2 160053216 160053216 1 + C T LUSC 160053230 + 160053210 160053250 41 AGTGGTCGCCGGGTCCTCCCCAGCCAGGCACCCTGAGGAAG AGTGGTTGCCGGGTCCTCCCCAGCCAGGCACCCTGAGGAAG < 41bp 1 0.524256791962174 1 0.569540917873383 experiment 0.951486416075653 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160053230 chr2:160053216 nonsynonymous SNV 0.609 0 7 hm5C_associated_SNPs_29674 0 0 1 0 2 TANC1 chr2:160053304 5'GT 160053304 Upstream 89bp
chr10 135233534 135233534 1 + C T LUSC 135233540 + 135233520 135233560 41 CGTCCCCCAGGTAACGTGAACATTATTCAGCCTAACTATCC CGTCCCCCAGGTAATGTGAACATTATTCAGCCTAACTATCC < 41bp 1 0.18298457933681 1 0.0123807787895203 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTG1 ENSG00000148824;ENSG00000254536 CDS Human other chr10:135233540 chr10:135233534 synonymous SNV . 0 15 hm5C_associated_SNPs_29675 0 0 1 0 1 MTG1 chr10:135233530 3'AG 135233530 Downstream 5bp
chr16 19580887 19580887 1 + G T LUSC 19580890 + 19580870 19580910 41 TGTTTGCAGCCACTGCTGACCCCGCAGCCTTGGCAGCTGCC TGTTTGCAGCCACTGCTTACCCCGCAGCCTTGGCAGCTGCC < 41bp 1 0.362313293390154 1 0.405920833349228 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19580890 chr16:19580887 nonsynonymous SNV 0.325 2 18 hm5C_associated_SNPs_29677 0 0 0 0 1 C16orf62 chr16:19580913 5'GT 19580913 Upstream 27bp
chr19 44732650 44732650 1 + C T LUSC 44732653 + 44732633 44732673 41 TCTCCAGGGAGGAACTGCGACTGCTCGATCTTACCCAGAGG TCTCCAGGGAGGAACTGTGACTGCTCGATCTTACCCAGAGG < 41bp 1 0.735731566295063 1 0.269361466169357 experiment 0.528536867409874 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF227 ENSG00000131115 CDS Human protein_coding chr19:44732653 chr19:44732650 stopgain 0.465 0 18 hm5C_associated_SNPs_29678 0 0 1 0 3 ZNF227 chr19:44732599 3'AG 44732599 Downstream 52bp
chr19 44732650 44732650 1 + C T LUSC 44732653 + 44732633 44732673 41 TCTCCAGGGAGGAACTGCGACTGCTCGATCTTACCCAGAGG TCTCCAGGGAGGAACTGTGACTGCTCGATCTTACCCAGAGG < 41bp 1 0.735731566295063 1 0.269361466169357 experiment 0.528536867409874 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF227 ENSG00000131115 CDS Human protein_coding chr19:44732653 chr19:44732650 stopgain 0.465 0 18 hm5C_associated_SNPs_29678 0 0 1 0 3 ZNF227 chr19:44732640 3'AG 44732640 Downstream 11bp
chr19 44732650 44732650 1 + C T LUSC 44732653 + 44732633 44732673 41 TCTCCAGGGAGGAACTGCGACTGCTCGATCTTACCCAGAGG TCTCCAGGGAGGAACTGTGACTGCTCGATCTTACCCAGAGG < 41bp 1 0.735731566295063 1 0.269361466169357 experiment 0.528536867409874 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF227 ENSG00000131115 CDS Human protein_coding chr19:44732653 chr19:44732650 stopgain 0.465 0 18 hm5C_associated_SNPs_29678 0 0 1 0 3 ZNF227 chr19:44732725 5'GT 44732725 Upstream 76bp
chr6 7880293 7880293 1 + G A LUSC 7880280 + 7880260 7880300 41 TACTGTGATGGAGAATGCTCCTTCCCACTCAACGCACACAT TACTGTGATGGAGAATGCTCCTTCCCACTCAACACACACAT < 41bp 1 0.0925657525142281 1 0.12411904335022 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BMP6 ENSG00000153162 CDS Human protein_coding chr6:7880280 chr6:7880293 nonsynonymous SNV 0.972 4 34 hm5C_associated_SNPs_29680 0 0 0 0 2 BMP6 chr6:7880224 3'AG 7880224 Downstream 70bp
chr6 7880293 7880293 1 + G A LUSC 7880280 + 7880260 7880300 41 TACTGTGATGGAGAATGCTCCTTCCCACTCAACGCACACAT TACTGTGATGGAGAATGCTCCTTCCCACTCAACACACACAT < 41bp 1 0.0925657525142281 1 0.12411904335022 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BMP6 ENSG00000153162 CDS Human protein_coding chr6:7880280 chr6:7880293 nonsynonymous SNV 0.972 4 34 hm5C_associated_SNPs_29680 0 0 0 0 2 BMP6 chr6:7880334 5'GT 7880334 Upstream 42bp
chr16 1793379 1793379 1 + G A LUSC 1793369 + 1793349 1793389 41 ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACG ACCTCCCTGAACGTGTTCCCCCTGGCTGACAGCACGGTACG < 41bp 1 0.183994634895468 1 0.0716525912284851 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1793369 chr16:1793379 nonsynonymous SNV 0.542 1 31 hm5C_associated_SNPs_29681 0 0 1 0 3 MAPK8IP3 chr16:1793333 3'AG 1793333 Downstream 47bp
chr16 1793379 1793379 1 + G A LUSC 1793369 + 1793349 1793389 41 ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACG ACCTCCCTGAACGTGTTCCCCCTGGCTGACAGCACGGTACG < 41bp 1 0.183994634895468 1 0.0716525912284851 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1793369 chr16:1793379 nonsynonymous SNV 0.542 1 31 hm5C_associated_SNPs_29681 0 0 1 0 3 MAPK8IP3 chr16:1793336 3'AG 1793336 Downstream 44bp
chr16 1793379 1793379 1 + G A LUSC 1793369 + 1793349 1793389 41 ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACG ACCTCCCTGAACGTGTTCCCCCTGGCTGACAGCACGGTACG < 41bp 1 0.183994634895468 1 0.0716525912284851 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1793369 chr16:1793379 nonsynonymous SNV 0.542 1 31 hm5C_associated_SNPs_29681 0 0 1 0 3 MAPK8IP3 chr16:1793477 5'GT 1793477 Upstream 99bp
chr19 17450292 17450292 1 + C T LUSC 17450306 + 17450286 17450326 41 CCGTGACGTGCTGGAGACCCCAGTCGACCTGGCCGGATTTC CCGTGATGTGCTGGAGACCCCAGTCGACCTGGCCGGATTTC < 41bp 1 0.310445997439642 1 0.864112257957458 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17450306 chr19:17450292 synonymous SNV . 0 7 hm5C_associated_SNPs_29682 0 0 1 0 1 GTPBP3 chr19:17450243 3'AG 17450243 Downstream 50bp
chr9 134064487 134064487 1 + C T LUSC 134064468 + 134064448 134064488 41 AATAAATTCCCTTAAGCCATCTGGGCCTACACCAGCATCCG AATAAATTCCCTTAAGCCATCTGGGCCTACACCAGCATCTG < 41bp 1 0.551165783505556 1 0.614125370979309 experiment 0.897668432988887 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP214 ENSG00000126883 CDS Human protein_coding chr9:134064468 chr9:134064487 synonymous SNV . 0 40 hm5C_associated_SNPs_29683 0 0 1 0 2 NUP214 chr9:134064440 3'AG 134064440 Downstream 48bp
chr9 134064487 134064487 1 + C T LUSC 134064468 + 134064448 134064488 41 AATAAATTCCCTTAAGCCATCTGGGCCTACACCAGCATCCG AATAAATTCCCTTAAGCCATCTGGGCCTACACCAGCATCTG < 41bp 1 0.551165783505556 1 0.614125370979309 experiment 0.897668432988887 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP214 ENSG00000126883 CDS Human protein_coding chr9:134064468 chr9:134064487 synonymous SNV . 0 40 hm5C_associated_SNPs_29683 0 0 1 0 2 NUP214 chr9:134064518 5'GT 134064518 Upstream 32bp
chr7 87005004 87005004 1 + C T LUSC 87005024 + 87005004 87005044 41 CAGCATTAACTAGTGAGGAGCGAACTCGATGGGCTAAGGTT TAGCATTAACTAGTGAGGAGCGAACTCGATGGGCTAAGGTT < 41bp 1 0.162785141178221 1 0.329127281904221 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CROT ENSG00000005469 CDS Human protein_coding chr7:87005024 chr7:87005004 nonsynonymous SNV 0.998 3 1 hm5C_associated_SNPs_29684 0 0 1 0 2 CROT chr7:87004948 3'AG 87004948 Downstream 57bp
chr7 87005004 87005004 1 + C T LUSC 87005024 + 87005004 87005044 41 CAGCATTAACTAGTGAGGAGCGAACTCGATGGGCTAAGGTT TAGCATTAACTAGTGAGGAGCGAACTCGATGGGCTAAGGTT < 41bp 1 0.162785141178221 1 0.329127281904221 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CROT ENSG00000005469 CDS Human protein_coding chr7:87005024 chr7:87005004 nonsynonymous SNV 0.998 3 1 hm5C_associated_SNPs_29684 0 0 1 0 2 CROT chr7:87005041 5'GT 87005041 Upstream 38bp
chr16 1818251 1818251 1 + T A LUSC 1818253 + 1818233 1818273 41 CCCGTCCCGGGGGCATCATCCACGTGTATGGCGATGACAGC CCCGTCCCGGGGGCATCAACCACGTGTATGGCGATGACAGC < 41bp 1 0.548668523770293 1 0.65506511926651 experiment 0.902662952459415 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1818253 chr16:1818251 nonsynonymous SNV 0.920 4 19 hm5C_associated_SNPs_29685 0 0 1 0 1 MAPK8IP3 chr16:1818200 3'AG 1818200 Downstream 52bp
chr22 39826118 39826118 1 + C T LUSC 39826113 + 39826093 39826133 41 CTCTTCCGCTCCCGGCCCGCCCACTCGCTCCCGCCTGGCGA CTCTTCCGCTCCCGGCCCGCCCACTTGCTCCCGCCTGGCGA < 41bp 1 0.125885176439328 1 0.158393740653992 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TAB1 ENSG00000100324 CDS Human protein_coding chr22:39826113 chr22:39826118 nonsynonymous SNV 0.337 1 26 hm5C_associated_SNPs_29688 0 0 1 0 1 TAB1 chr22:39826020 3'AG 39826020 Downstream 99bp
chr10 126505156 126505156 1 + C T LUSC 126505159 + 126505139 126505179 41 TTACAGAAATCCATAACCATCAGCCTTGTTCAAAACTTTTT TTACAGAAATCCATAACTATCAGCCTTGTTCAAAACTTTTT < 41bp 1 0.372667454291453 1 0.108684033155441 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126505159 chr10:126505156 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_29689 0 0 0 0 2 ABRAXAS2 chr10:126505145 3'AG 126505145 Downstream 12bp
chr10 126505156 126505156 1 + C T LUSC 126505159 + 126505139 126505179 41 TTACAGAAATCCATAACCATCAGCCTTGTTCAAAACTTTTT TTACAGAAATCCATAACTATCAGCCTTGTTCAAAACTTTTT < 41bp 1 0.372667454291453 1 0.108684033155441 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126505159 chr10:126505156 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_29689 0 0 0 0 2 ABRAXAS2 chr10:126505181 5'GT 126505181 Upstream 26bp
chr10 5963500 5963500 1 + G T LUSC 5963508 + 5963488 5963528 41 CGGGTGACGGAAGGGGAATTCCCTTCAAGGATACATTTGAT CGGGTGACGGAATGGGAATTCCCTTCAAGGATACATTTGAT < 41bp 1 0.0834349981506513 1 0.19140562415123 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963508 chr10:5963500 nonsynonymous SNV 0.812 4 13 hm5C_associated_SNPs_29690 0 0 1 0 2 FBXO18 chr10:5963411 3'AG 5963411 Downstream 90bp
chr10 5963500 5963500 1 + G T LUSC 5963508 + 5963488 5963528 41 CGGGTGACGGAAGGGGAATTCCCTTCAAGGATACATTTGAT CGGGTGACGGAATGGGAATTCCCTTCAAGGATACATTTGAT < 41bp 1 0.0834349981506513 1 0.19140562415123 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963508 chr10:5963500 nonsynonymous SNV 0.812 4 13 hm5C_associated_SNPs_29690 0 0 1 0 2 FBXO18 chr10:5963532 5'GT 5963532 Upstream 33bp
chr10 5963500 5963500 1 + G T LUSC 5963513 + 5963493 5963533 41 GACGGAAGGGGAATTCCCTTCAAGGATACATTTGATTGGGG GACGGAATGGGAATTCCCTTCAAGGATACATTTGATTGGGG < 41bp 1 0.639802474489061 1 0.753195881843567 experiment 0.720395051021877 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963513 chr10:5963500 nonsynonymous SNV 0.812 4 8 hm5C_associated_SNPs_29691 0 0 1 0 2 FBXO18 chr10:5963411 3'AG 5963411 Downstream 90bp
chr10 5963500 5963500 1 + G T LUSC 5963513 + 5963493 5963533 41 GACGGAAGGGGAATTCCCTTCAAGGATACATTTGATTGGGG GACGGAATGGGAATTCCCTTCAAGGATACATTTGATTGGGG < 41bp 1 0.639802474489061 1 0.753195881843567 experiment 0.720395051021877 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963513 chr10:5963500 nonsynonymous SNV 0.812 4 8 hm5C_associated_SNPs_29691 0 0 1 0 2 FBXO18 chr10:5963532 5'GT 5963532 Upstream 33bp
chr17 53852192 53852192 1 + C T LUSC 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTCGATAACCCGGGTGGCCAAATTCTGTCCTGGCTCATT < 41bp 1 0.295172663968811 1 0.168204635381699 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852192 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_29692 0 0 1 1 2 PCTP chr17:53852153 3'AG 53852153 Downstream 40bp
chr17 53852192 53852192 1 + C T LUSC 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTCGATAACCCGGGTGGCCAAATTCTGTCCTGGCTCATT < 41bp 1 0.295172663968811 1 0.168204635381699 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852192 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_29692 0 0 1 1 2 PCTP chr17:53852220 5'GT 53852220 Upstream 29bp
chr16 30740303 30740303 1 + A C LUSC 30740289 + 30740269 30740309 41 TTTTTCTCTCACCCCCAGGACTCCCTGGAGGAAAAGCGGAA TTTTTCTCTCACCCCCAGGACTCCCTGGAGGAAACGCGGAA < 41bp 1 0.0750715682875336 1 0.232941389083862 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30740289 chr16:30740303 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_29693 0 0 1 0 1 SRCAP chr16:30740287 3'AG 30740287 Downstream 17bp
chr14 35649910 35649910 1 + G A LUSC 35649907 + 35649887 35649927 41 ATTTGAGAACTTCATAAAATCTCGTCCTCCTTTTGATGTTG ATTTGAGAACTTCATAAAATCTCATCCTCCTTTTGATGTTG < 41bp 1 0.298008279678377 1 0.099660336971283 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA0391 ENSG00000100890;ENSG00000258790 CDS Human other chr14:35649907 chr14:35649910 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_29694 0 0 1 0 2 KIAA0391 chr14:35649876 3'AG 35649876 Downstream 35bp
chr14 35649910 35649910 1 + G A LUSC 35649907 + 35649887 35649927 41 ATTTGAGAACTTCATAAAATCTCGTCCTCCTTTTGATGTTG ATTTGAGAACTTCATAAAATCTCATCCTCCTTTTGATGTTG < 41bp 1 0.298008279678377 1 0.099660336971283 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA0391 ENSG00000100890;ENSG00000258790 CDS Human other chr14:35649907 chr14:35649910 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_29694 0 0 1 0 2 KIAA0391 chr14:35649983 5'GT 35649983 Upstream 74bp
chr2 219609925 219609925 1 + T A LUSC 219609940 + 219609920 219609960 41 CCCCCTACCATCTATTTTGGCACTCGGGATGAGAGAGGTAA CCCCCAACCATCTATTTTGGCACTCGGGATGAGAGAGGTAA < 41bp 1 0.126620423482276 1 0.0488289594650269 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219609940 chr2:219609925 synonymous SNV . 0 6 hm5C_associated_SNPs_29696 0 0 1 0 2 TTLL4 chr2:219609832 3'AG 219609832 Downstream 94bp
chr2 219609925 219609925 1 + T A LUSC 219609940 + 219609920 219609960 41 CCCCCTACCATCTATTTTGGCACTCGGGATGAGAGAGGTAA CCCCCAACCATCTATTTTGGCACTCGGGATGAGAGAGGTAA < 41bp 1 0.126620423482276 1 0.0488289594650269 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219609940 chr2:219609925 synonymous SNV . 0 6 hm5C_associated_SNPs_29696 0 0 1 0 2 TTLL4 chr2:219609956 5'GT 219609956 Upstream 32bp
chr2 219609925 219609925 1 + T A LUSC 219609942 + 219609922 219609962 41 CCCTACCATCTATTTTGGCACTCGGGATGAGAGAGGTAAAC CCCAACCATCTATTTTGGCACTCGGGATGAGAGAGGTAAAC < 41bp 1 0.551919882338622 1 0.144984751939774 experiment 0.896160235322756 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219609942 chr2:219609925 synonymous SNV . 0 4 hm5C_associated_SNPs_29697 0 0 1 0 2 TTLL4 chr2:219609832 3'AG 219609832 Downstream 94bp
chr2 219609925 219609925 1 + T A LUSC 219609942 + 219609922 219609962 41 CCCTACCATCTATTTTGGCACTCGGGATGAGAGAGGTAAAC CCCAACCATCTATTTTGGCACTCGGGATGAGAGAGGTAAAC < 41bp 1 0.551919882338622 1 0.144984751939774 experiment 0.896160235322756 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219609942 chr2:219609925 synonymous SNV . 0 4 hm5C_associated_SNPs_29697 0 0 1 0 2 TTLL4 chr2:219609956 5'GT 219609956 Upstream 32bp
chr18 13095637 13095637 1 + G A LUSC 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGAACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.171859936409406 1 0.0935557186603546 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095637 stopgain 0.016 1 5 hm5C_associated_SNPs_29698 0 0 1 8 1 CEP192 chr18:13095680 5'GT 13095680 Upstream 44bp
chr18 13095637 13095637 1 + G A LUSC 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGAACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.562976169643423 1 0.1068414747715 experiment 0.874047660713154 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095637 stopgain 0.016 1 3 hm5C_associated_SNPs_29699 0 0 1 8 1 CEP192 chr18:13095680 5'GT 13095680 Upstream 44bp
chr3 120315361 120315361 1 + A G LUSC 120315381 + 120315361 120315401 41 ACGATCCCAACCGCCGAGGGCTCATCGTGAGTGTGGGGCCT GCGATCCCAACCGCCGAGGGCTCATCGTGAGTGTGGGGCCT < 41bp 1 0.505039203893455 1 0.0751952826976776 experiment 0.989921592213089 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFB4 ENSG00000065518 CDS Human protein_coding chr3:120315381 chr3:120315361 nonsynonymous SNV 0.996 1 1 hm5C_associated_SNPs_29700 0 0 1 0 1 NDUFB4 chr3:120315386 5'GT 120315386 Upstream 26bp
chr14 90866422 90866422 1 + C T LUSC 90866437 + 90866417 90866457 41 GCTGACCGAAGAACAGATTGCTGGTAAGTTGACAACTCCAA GCTGATCGAAGAACAGATTGCTGGTAAGTTGACAACTCCAA < 41bp 1 0.74535603088987 1 0.0962944626808167 experiment 0.50928793822026 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CALM1 ENSG00000198668 CDS Human protein_coding chr14:90866437 chr14:90866422 nonsynonymous SNV 0.997 1 6 hm5C_associated_SNPs_29701 0 0 1 0 2 CALM1 chr14:90866409 3'AG 90866409 Downstream 14bp
chr14 90866422 90866422 1 + C T LUSC 90866437 + 90866417 90866457 41 GCTGACCGAAGAACAGATTGCTGGTAAGTTGACAACTCCAA GCTGATCGAAGAACAGATTGCTGGTAAGTTGACAACTCCAA < 41bp 1 0.74535603088987 1 0.0962944626808167 experiment 0.50928793822026 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CALM1 ENSG00000198668 CDS Human protein_coding chr14:90866437 chr14:90866422 nonsynonymous SNV 0.997 1 6 hm5C_associated_SNPs_29701 0 0 1 0 2 CALM1 chr14:90866439 5'GT 90866439 Upstream 18bp
chrX 37984555 37984555 1 + C T LUSC 37984551 + 37984531 37984571 41 GATTGTTTTTTCTCATGCAGCTACCTGCTCCCTGATGATAG GATTGTTTTTTCTCATGCAGCTACTTGCTCCCTGATGATAG < 41bp 1 0.147409576735862 1 0.0458766222000122 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37984551 chrX:37984555 synonymous SNV . 0 25 hm5C_associated_SNPs_29704 0 0 0 0 1 SYTL5 chrX:37984551 3'AG 37984551 Downstream 5bp
chr20 42695413 42695413 1 + G T LUSC 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCCCCAGCAGCTCGGGATCCTTCTCACCTGGCCCATCCAA < 41bp 1 0.159753493904613 1 0.0418576300144196 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695413 nonsynonymous SNV 0.876 1 23 hm5C_associated_SNPs_29705 0 0 1 0 2 TOX2 chr20:42695370 3'AG 42695370 Downstream 44bp
chr20 42695413 42695413 1 + G T LUSC 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCCCCAGCAGCTCGGGATCCTTCTCACCTGGCCCATCCAA < 41bp 1 0.159753493904613 1 0.0418576300144196 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695413 nonsynonymous SNV 0.876 1 23 hm5C_associated_SNPs_29705 0 0 1 0 2 TOX2 chr20:42695497 5'GT 42695497 Upstream 85bp
chr3 49212197 49212197 1 + G T LUSC 49212179 + 49212159 49212199 41 CCAATTCCATTGACAGGGGGCCGCCAGGGCAAGCTCCCGGT CCAATTCCATTGACAGGGGGCCGCCAGGGCAAGCTCCCTGT < 41bp 1 0.0785873779730447 1 0.110293090343475 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212179 chr3:49212197 synonymous SNV . 0 39 hm5C_associated_SNPs_29706 0 0 1 0 1 KLHDC8B chr3:49212175 3'AG 49212175 Downstream 23bp
chr3 49212197 49212197 1 + G T LUSC 49212180 + 49212160 49212200 41 CAATTCCATTGACAGGGGGCCGCCAGGGCAAGCTCCCGGTG CAATTCCATTGACAGGGGGCCGCCAGGGCAAGCTCCCTGTG < 41bp 1 0.637904332703646 1 0.175075113773346 experiment 0.724191334592707 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212180 chr3:49212197 synonymous SNV . 0 38 hm5C_associated_SNPs_29707 0 0 1 0 1 KLHDC8B chr3:49212175 3'AG 49212175 Downstream 23bp
chr1 23236984 23236984 1 + C T LUSC 23236971 + 23236951 23236991 41 TGGACTGTTGGCAGAAGGACCGCAACCACCGGCCCAAGTTC TGGACTGTTGGCAGAAGGACCGCAACCACCGGCTCAAGTTC < 41bp 1 0.507831843277721 1 0.371016651391983 experiment 0.984336313444559 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23236971 chr1:23236984 nonsynonymous SNV 1.000 5 34 hm5C_associated_SNPs_29709 0 0 0 0 1 EPHB2 chr1:23237068 5'GT 23237068 Upstream 85bp
chr19 10897259 10897259 1 + G T LUSC 10897279 + 10897259 10897299 41 GGGAGTCGCTGCCGGCCCTACGTAGCAAACTACAGAGCCAG TGGAGTCGCTGCCGGCCCTACGTAGCAAACTACAGAGCCAG < 41bp 1 0.17900961809398 1 0.193195015192032 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10897279 chr19:10897259 nonsynonymous SNV 0.992 3 1 hm5C_associated_SNPs_29711 0 0 1 0 1 DNM2 chr19:10897240 3'AG 10897240 Downstream 20bp
chr18 8114809 8114809 1 + C G LUSC 8114803 + 8114783 8114823 41 ACACAGGAAACCAAAATAGACTGTGTCCAAGTGGCCACAAA ACACAGGAAACCAAAATAGACTGTGTGCAAGTGGCCACAAA < 41bp 1 0.178847305081011 1 0.0419135093688965 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:8114803 chr18:8114809 synonymous SNV . 0 27 hm5C_associated_SNPs_29712 0 0 1 0 2 PTPRM chr18:8114789 3'AG 8114789 Downstream 21bp
chr18 8114809 8114809 1 + C G LUSC 8114803 + 8114783 8114823 41 ACACAGGAAACCAAAATAGACTGTGTCCAAGTGGCCACAAA ACACAGGAAACCAAAATAGACTGTGTGCAAGTGGCCACAAA < 41bp 1 0.178847305081011 1 0.0419135093688965 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:8114803 chr18:8114809 synonymous SNV . 0 27 hm5C_associated_SNPs_29712 0 0 1 0 2 PTPRM chr18:8114825 5'GT 8114825 Upstream 17bp
chr14 35550321 35550321 1 + G C LUSC 35550328 + 35550308 35550348 41 CATTGTTCAGACAGATCAACCAGAGACAGTGATATCCAGCT CATTGTTCAGACACATCAACCAGAGACAGTGATATCCAGCT < 41bp 1 0.504587630258096 1 0.630190074443817 experiment 0.990824739483807 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAM177A1 ENSG00000151327 CDS Human protein_coding chr14:35550328 chr14:35550321 nonsynonymous SNV 0.999 1 14 hm5C_associated_SNPs_29713 0 0 1 0 1 FAM177A1 chr14:35550228 3'AG 35550228 Downstream 94bp
chr1 109241358 109241358 1 + C G LUSC 109241377 + 109241357 109241397 41 TCAACAGATTAAAACCCGACCTAGAAAAATCAAGAAAGATG TGAACAGATTAAAACCCGACCTAGAAAAATCAAGAAAGATG < 41bp 1 0.571525919907641 1 0.23075732588768 experiment 0.856948160184718 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRPF38B ENSG00000134186 CDS Human protein_coding chr1:109241377 chr1:109241358 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_29715 0 0 1 0 1 PRPF38B chr1:109241449 5'GT 109241449 Upstream 92bp
chr7 129064931 129064931 1 + G T LUSC 129064943 + 129064923 129064963 41 TTTACAATGCTCCTGAGGGTCGCTATAAGCAGGATGTCTAC TTTACAATTCTCCTGAGGGTCGCTATAAGCAGGATGTCTAC < 41bp 1 0.556139825558666 1 0.663635611534119 experiment 0.887720348882667 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064943 chr7:129064931 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_29716 0 0 0 0 2 AHCYL2 chr7:129064904 3'AG 129064904 Downstream 28bp
chr7 129064931 129064931 1 + G T LUSC 129064943 + 129064923 129064963 41 TTTACAATGCTCCTGAGGGTCGCTATAAGCAGGATGTCTAC TTTACAATTCTCCTGAGGGTCGCTATAAGCAGGATGTCTAC < 41bp 1 0.556139825558666 1 0.663635611534119 experiment 0.887720348882667 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064943 chr7:129064931 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_29716 0 0 0 0 2 AHCYL2 chr7:129064982 5'GT 129064982 Upstream 52bp
chr19 1043767 1043767 1 + G A LUSC 1043784 + 1043764 1043804 41 TCCGGGAGGTGTGGGAGATGCTGGGACCCCGGATCTTCACC TCCAGGAGGTGTGGGAGATGCTGGGACCCCGGATCTTCACC < 41bp 1 0.745644801792049 1 0.870381474494934 experiment 0.508710396415902 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1043784 chr19:1043767 nonsynonymous SNV 0.000 1 4 hm5C_associated_SNPs_29717 0 0 1 0 2 ABCA7 chr19:1043724 3'AG 1043724 Downstream 44bp
chr19 1043767 1043767 1 + G A LUSC 1043784 + 1043764 1043804 41 TCCGGGAGGTGTGGGAGATGCTGGGACCCCGGATCTTCACC TCCAGGAGGTGTGGGAGATGCTGGGACCCCGGATCTTCACC < 41bp 1 0.745644801792049 1 0.870381474494934 experiment 0.508710396415902 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1043784 chr19:1043767 nonsynonymous SNV 0.000 1 4 hm5C_associated_SNPs_29717 0 0 1 0 2 ABCA7 chr19:1043840 5'GT 1043840 Upstream 74bp
chr15 74335390 74335390 1 + A G LUSC 74335388 + 74335368 74335408 41 TGACCTCCAGCTGGAAGGCCCCAGCACCCTCAGGGTCCTGG TGACCTCCAGCTGGAAGGCCCCGGCACCCTCAGGGTCCTGG < 41bp 1 0.239987790627818 1 0.280622720718384 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74335388 chr15:74335390 nonsynonymous SNV 0.100 1 23 hm5C_associated_SNPs_29721 0 0 0 1 2 PML chr15:74335330 3'AG 74335330 Downstream 61bp
chr15 74335390 74335390 1 + A G LUSC 74335388 + 74335368 74335408 41 TGACCTCCAGCTGGAAGGCCCCAGCACCCTCAGGGTCCTGG TGACCTCCAGCTGGAAGGCCCCGGCACCCTCAGGGTCCTGG < 41bp 1 0.239987790627818 1 0.280622720718384 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74335388 chr15:74335390 nonsynonymous SNV 0.100 1 23 hm5C_associated_SNPs_29721 0 0 0 1 2 PML chr15:74335480 5'GT 74335480 Upstream 91bp
chr22 26400691 26400691 1 + G A LUSC 26400695 + 26400675 26400715 41 TTATTCTAGGGATAACGTCTCCATCCTCAGCTCCCAGCCAG TTATTCTAGGGATAACATCTCCATCCTCAGCTCCCAGCCAG < 41bp 1 0.0379296677474716 1 0.383710235357285 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26400695 chr22:26400691 nonsynonymous SNV 0.838 1 17 hm5C_associated_SNPs_29722 0 0 0 0 1 MYO18B chr22:26400684 3'AG 26400684 Downstream 8bp
chr7 98591333 98591333 1 + C A LUSC 98591325 + 98591305 98591345 41 CCCTGGAAGGCATCGTCGATCAGATGGTCTGGTTCAGAGAA CCCTGGAAGGCATCGTCGATCAGATGGTATGGTTCAGAGAA < 41bp 1 0.290572022275492 1 0.489031940698624 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98591325 chr7:98591333 synonymous SNV . 0 29 hm5C_associated_SNPs_29723 0 0 1 0 1 TRRAP chr7:98591360 5'GT 98591360 Upstream 28bp
chr6 32134290 32134290 1 + C G LUSC 32134276 + 32134256 32134296 41 TCCTCTGGCATGGACGCAGTCAGGGAGTCTGCTCCAAGCAG TCCTCTGGCATGGACGCAGTCAGGGAGTCTGCTCGAAGCAG < 41bp 1 0.737385749371329 1 0.836271643638611 experiment 0.525228501257343 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134276 chr6:32134290 synonymous SNV . 0 35 hm5C_associated_SNPs_29724 0 0 1 2 1 EGFL8 chr6:32134275 3'AG 32134275 Downstream 16bp
chr2 54886312 54886312 1 + A G LUSC 54886300 + 54886280 54886320 41 TTTTCTCTTAGTTGGAGTTACTGGAAGTGCGCAGACAGCAA TTTTCTCTTAGTTGGAGTTACTGGAAGTGCGCGGACAGCAA < 41bp 1 0.647569565716093 1 0.736757874488831 experiment 0.704860868567814 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54886300 chr2:54886312 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_29725 0 0 1 0 2 SPTBN1 chr2:54886291 3'AG 54886291 Downstream 22bp
chr2 54886312 54886312 1 + A G LUSC 54886300 + 54886280 54886320 41 TTTTCTCTTAGTTGGAGTTACTGGAAGTGCGCAGACAGCAA TTTTCTCTTAGTTGGAGTTACTGGAAGTGCGCGGACAGCAA < 41bp 1 0.647569565716093 1 0.736757874488831 experiment 0.704860868567814 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54886300 chr2:54886312 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_29725 0 0 1 0 2 SPTBN1 chr2:54886403 5'GT 54886403 Upstream 92bp
chr2 54886312 54886312 1 + A G LUSC 54886311 + 54886291 54886331 41 TTGGAGTTACTGGAAGTGCGCAGACAGCAAGAGGAAGAGGA TTGGAGTTACTGGAAGTGCGCGGACAGCAAGAGGAAGAGGA < 41bp 1 0.134844644424465 1 0.46202027797699 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54886311 chr2:54886312 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_29726 0 0 1 0 2 SPTBN1 chr2:54886291 3'AG 54886291 Downstream 22bp
chr2 54886312 54886312 1 + A G LUSC 54886311 + 54886291 54886331 41 TTGGAGTTACTGGAAGTGCGCAGACAGCAAGAGGAAGAGGA TTGGAGTTACTGGAAGTGCGCGGACAGCAAGAGGAAGAGGA < 41bp 1 0.134844644424465 1 0.46202027797699 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54886311 chr2:54886312 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_29726 0 0 1 0 2 SPTBN1 chr2:54886403 5'GT 54886403 Upstream 92bp
chr2 54886312 54886312 1 + A G LUSC 54886315 + 54886295 54886335 41 AGTTACTGGAAGTGCGCAGACAGCAAGAGGAAGAGGAGAGG AGTTACTGGAAGTGCGCGGACAGCAAGAGGAAGAGGAGAGG < 41bp 1 0.514973139526333 1 0.637288808822632 experiment 0.970053720947333 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54886315 chr2:54886312 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_29727 0 0 1 0 2 SPTBN1 chr2:54886291 3'AG 54886291 Downstream 22bp
chr2 54886312 54886312 1 + A G LUSC 54886315 + 54886295 54886335 41 AGTTACTGGAAGTGCGCAGACAGCAAGAGGAAGAGGAGAGG AGTTACTGGAAGTGCGCGGACAGCAAGAGGAAGAGGAGAGG < 41bp 1 0.514973139526333 1 0.637288808822632 experiment 0.970053720947333 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54886315 chr2:54886312 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_29727 0 0 1 0 2 SPTBN1 chr2:54886403 5'GT 54886403 Upstream 92bp
chr2 54886312 54886312 1 + A G LUSC 54886318 + 54886298 54886338 41 TACTGGAAGTGCGCAGACAGCAAGAGGAAGAGGAGAGGAAG TACTGGAAGTGCGCGGACAGCAAGAGGAAGAGGAGAGGAAG < 41bp 1 0.713072889735591 1 0.833497881889343 experiment 0.573854220528818 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54886318 chr2:54886312 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_29728 0 0 1 0 2 SPTBN1 chr2:54886291 3'AG 54886291 Downstream 22bp
chr2 54886312 54886312 1 + A G LUSC 54886318 + 54886298 54886338 41 TACTGGAAGTGCGCAGACAGCAAGAGGAAGAGGAGAGGAAG TACTGGAAGTGCGCGGACAGCAAGAGGAAGAGGAGAGGAAG < 41bp 1 0.713072889735591 1 0.833497881889343 experiment 0.573854220528818 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54886318 chr2:54886312 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_29728 0 0 1 0 2 SPTBN1 chr2:54886403 5'GT 54886403 Upstream 92bp
chrX 41089004 41089004 1 + C A LUSC 41089020 + 41089000 41089040 41 CTTGCAAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAA CTTGAAAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAA < 41bp 1 0.108350639600774 1 0.184901058673859 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089020 chrX:41089004 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_29729 0 0 1 0 2 USP9X chrX:41089032 5'GT 41089032 Upstream 29bp
chrX 41089004 41089004 1 + C A LUSC 41089020 + 41089000 41089040 41 CTTGCAAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAA CTTGAAAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAA < 41bp 1 0.108350639600774 1 0.184901058673859 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089020 chrX:41089004 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_29729 0 0 1 0 2 USP9X chrX:41089080 5'GT 41089080 Upstream 77bp
chr19 14561789 14561789 1 + G T LUSC 14561797 + 14561777 14561817 41 GGGGAGCTGCCCGCCGACCACCCCAAGGGGCGGCTGCTGCG GGGGAGCTGCCCTCCGACCACCCCAAGGGGCGGCTGCTGCG < 41bp 1 0.606673622619706 1 0.5861856341362 experiment 0.786652754760589 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14561797 chr19:14561789 nonsynonymous SNV 0.995 0 13 hm5C_associated_SNPs_29730 0 0 1 0 1 PKN1 chr19:14561708 3'AG 14561708 Downstream 82bp
chr2 239038780 239038780 1 + G A LUSC 239038799 + 239038779 239038819 41 GGAGCTCAGGCCCCACGGAGCAGGCGGCCTGGAGGTACTCA GAAGCTCAGGCCCCACGGAGCAGGCGGCCTGGAGGTACTCA < 41bp 1 0.527458025354713 1 0.917332887649536 experiment 0.945083949290573 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ESPNL ENSG00000144488 CDS Human protein_coding chr2:239038799 chr2:239038780 synonymous SNV . 0 2 hm5C_associated_SNPs_29732 0 0 0 0 1 ESPNL chr2:239038769 3'AG 239038769 Downstream 12bp
chr3 111705821 111705821 1 + G C LUSC 111705815 + 111705795 111705835 41 TGCTTCATGCTGCAATTGCACGACCAGAGAAGGTCGTGGCT TGCTTCATGCTGCAATTGCACGACCACAGAAGGTCGTGGCT < 41bp 1 0.465116699743595 1 0.0816821157932281 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111705815 chr3:111705821 nonsynonymous SNV 0.204 0 27 hm5C_associated_SNPs_29733 0 0 0 0 2 ABHD10 chr3:111705761 3'AG 111705761 Downstream 61bp
chr3 111705821 111705821 1 + G C LUSC 111705815 + 111705795 111705835 41 TGCTTCATGCTGCAATTGCACGACCAGAGAAGGTCGTGGCT TGCTTCATGCTGCAATTGCACGACCACAGAAGGTCGTGGCT < 41bp 1 0.465116699743595 1 0.0816821157932281 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111705815 chr3:111705821 nonsynonymous SNV 0.204 0 27 hm5C_associated_SNPs_29733 0 0 0 0 2 ABHD10 chr3:111705898 5'GT 111705898 Upstream 78bp
chr19 13054428 13054428 1 + G A LUSC 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTGAGGAGTTTGGCAACGAGACATGGGGCGTAAC < 41bp 1 0.636038658160697 1 0.457737475633621 experiment 0.727922683678606 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054428 synonymous SNV . 0 30 hm5C_associated_SNPs_29735 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 78bp
chr19 13054428 13054428 1 + G A LUSC 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTGAGGAGTTTGGCAACGAGACATGGGGCGTAAC < 41bp 1 0.636038658160697 1 0.457737475633621 experiment 0.727922683678606 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054428 synonymous SNV . 0 30 hm5C_associated_SNPs_29735 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 16bp
chr19 13054428 13054428 1 + G A LUSC 13054427 + 13054407 13054447 41 TGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA TGAGGAGTTTGGCAACGAGACATGGGGCGTAACAAAGGTGA < 41bp 1 0.661843994332093 1 0.376543790102005 experiment 0.676312011335814 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054427 chr19:13054428 synonymous SNV . 0 22 hm5C_associated_SNPs_29736 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 78bp
chr19 13054428 13054428 1 + G A LUSC 13054427 + 13054407 13054447 41 TGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA TGAGGAGTTTGGCAACGAGACATGGGGCGTAACAAAGGTGA < 41bp 1 0.661843994332093 1 0.376543790102005 experiment 0.676312011335814 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054427 chr19:13054428 synonymous SNV . 0 22 hm5C_associated_SNPs_29736 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 16bp
chr2 135180449 135180449 1 + G C LUSC 135180429 + 135180409 135180449 41 CGGGCGGCCACATGTGTGGACTGTTGACCTCAACAATCAGG CGGGCGGCCACATGTGTGGACTGTTGACCTCAACAATCAGC < 41bp 1 0.0761205737098571 1 0.0155433118343353 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135180429 chr2:135180449 nonsynonymous SNV 0.885 0 41 hm5C_associated_SNPs_29738 0 0 1 0 2 MGAT5 chr2:135180374 3'AG 135180374 Downstream 76bp
chr2 135180449 135180449 1 + G C LUSC 135180429 + 135180409 135180449 41 CGGGCGGCCACATGTGTGGACTGTTGACCTCAACAATCAGG CGGGCGGCCACATGTGTGGACTGTTGACCTCAACAATCAGC < 41bp 1 0.0761205737098571 1 0.0155433118343353 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135180429 chr2:135180449 nonsynonymous SNV 0.885 0 41 hm5C_associated_SNPs_29738 0 0 1 0 2 MGAT5 chr2:135180490 5'GT 135180490 Upstream 42bp
chr3 111698038 111698038 1 + C G LUSC 111698046 + 111698026 111698066 41 CAGCGGGCGCCACGGTGGCTCCCAGGTCAGTGTCCGAAAGG CAGCGGGCGCCAGGGTGGCTCCCAGGTCAGTGTCCGAAAGG < 41bp 1 0.68436645797759 1 0.251669675111771 experiment 0.631267084044821 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111698046 chr3:111698038 nonsynonymous SNV 0.670 0 13 hm5C_associated_SNPs_29744 0 0 1 0 1 ABHD10 chr3:111698050 5'GT 111698050 Upstream 13bp
chr5 138994186 138994186 1 + C T LUSC 138994200 + 138994180 138994220 41 GGCAAGCTACAATAATGGGGCCAGTAAGTATTCAGATTAAT GGCAAGTTACAATAATGGGGCCAGTAAGTATTCAGATTAAT < 41bp 1 0.0512228483636824 1 0.0396513342857361 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE2D2 ENSG00000131508 CDS Human protein_coding chr5:138994200 chr5:138994186 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_29745 0 0 1 0 1 UBE2D2 chr5:138994202 5'GT 138994202 Upstream 17bp
chr12 21207473 21207473 1 + G T LUSC 21207493 + 21207473 21207513 41 GCTTGTACAAGGAAATCTTACGTTTATTTTGTAATTCAAGT TCTTGTACAAGGAAATCTTACGTTTATTTTGTAATTCAAGT < 41bp 1 0.0825022465954094 1 0.093438595533371 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21207493 chr12:21207473 nonsynonymous SNV 0.001 0 1 hm5C_associated_SNPs_29746 0 0 0 0 2 SLCO1B7 chr12:21207386 3'AG 21207386 Downstream 88bp
chr12 21207473 21207473 1 + G T LUSC 21207493 + 21207473 21207513 41 GCTTGTACAAGGAAATCTTACGTTTATTTTGTAATTCAAGT TCTTGTACAAGGAAATCTTACGTTTATTTTGTAATTCAAGT < 41bp 1 0.0825022465954094 1 0.093438595533371 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21207493 chr12:21207473 nonsynonymous SNV 0.001 0 1 hm5C_associated_SNPs_29746 0 0 0 0 2 SLCO1B7 chr12:21207570 5'GT 21207570 Upstream 98bp
chr5 64082381 64082381 1 + C T LUSC 64082382 + 64082362 64082402 41 TCCTTTTGATGACATCATTCCAAGGGAAATTAAAAGGCTGA TCCTTTTGATGACATCATTTCAAGGGAAATTAAAAGGCTGA < 41bp 1 0.495355801146231 1 0.875751733779907 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64082382 chr5:64082381 nonsynonymous SNV 0.998 4 20 hm5C_associated_SNPs_29747 0 0 1 0 2 CWC27 chr5:64082351 3'AG 64082351 Downstream 31bp
chr5 64082381 64082381 1 + C T LUSC 64082382 + 64082362 64082402 41 TCCTTTTGATGACATCATTCCAAGGGAAATTAAAAGGCTGA TCCTTTTGATGACATCATTTCAAGGGAAATTAAAAGGCTGA < 41bp 1 0.495355801146231 1 0.875751733779907 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64082382 chr5:64082381 nonsynonymous SNV 0.998 4 20 hm5C_associated_SNPs_29747 0 0 1 0 2 CWC27 chr5:64082454 5'GT 64082454 Upstream 74bp
chr17 7476179 7476179 1 + C T LUSC 7476180 + 7476160 7476200 41 ATGTCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCA ATGTCTGCGAGCCAGGATTTCCGGTAAGAAAGGCATTTGCA < 41bp 1 0.426964230449142 1 0.159740924835205 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7476180 chr17:7476179 nonsynonymous SNV 0.997 1 20 hm5C_associated_SNPs_29748 0 0 1 0 1 EIF4A1 chr17:7476182 5'GT 7476182 Upstream 4bp
chr17 7476179 7476179 1 + C T LUSC 7476181 + 7476161 7476201 41 TGTCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCAA TGTCTGCGAGCCAGGATTTCCGGTAAGAAAGGCATTTGCAA < 41bp 1 0.691471924485688 1 0.683213293552399 experiment 0.617056151028625 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7476181 chr17:7476179 nonsynonymous SNV 0.997 1 19 hm5C_associated_SNPs_29749 0 0 1 0 1 EIF4A1 chr17:7476182 5'GT 7476182 Upstream 4bp
chr19 39196707 39196707 1 + C T LUSC 39196704 + 39196684 39196724 41 AGACCTCGGCCAAGGAAGGGCTCCTTCTCTGGTGCCAGAGA AGACCTCGGCCAAGGAAGGGCTCTTTCTCTGGTGCCAGAGA < 41bp 1 0.0599294787630015 1 0.169633030891418 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39196704 chr19:39196707 nonsynonymous SNV 0.960 5 24 hm5C_associated_SNPs_29750 0 0 1 0 2 ACTN4 chr19:39196684 3'AG 39196684 Downstream 24bp
chr19 39196707 39196707 1 + C T LUSC 39196704 + 39196684 39196724 41 AGACCTCGGCCAAGGAAGGGCTCCTTCTCTGGTGCCAGAGA AGACCTCGGCCAAGGAAGGGCTCTTTCTCTGGTGCCAGAGA < 41bp 1 0.0599294787630015 1 0.169633030891418 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39196704 chr19:39196707 nonsynonymous SNV 0.960 5 24 hm5C_associated_SNPs_29750 0 0 1 0 2 ACTN4 chr19:39196771 5'GT 39196771 Upstream 65bp
chr7 43506110 43506110 1 + C T LUSC 43506109 + 43506089 43506129 41 AATCACCTTGCTGCTGCAGTCCCCAGCGGTCAAGTTCATCA AATCACCTTGCTGCTGCAGTCTCCAGCGGTCAAGTTCATCA < 41bp 1 0.626378854554584 1 0.894201636314392 experiment 0.747242290890831 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HECW1 ENSG00000002746 CDS Human protein_coding chr7:43506109 chr7:43506110 synonymous SNV . 0 22 hm5C_associated_SNPs_29752 0 0 0 0 2 HECW1 chr7:43506046 3'AG 43506046 Downstream 65bp
chr7 43506110 43506110 1 + C T LUSC 43506109 + 43506089 43506129 41 AATCACCTTGCTGCTGCAGTCCCCAGCGGTCAAGTTCATCA AATCACCTTGCTGCTGCAGTCTCCAGCGGTCAAGTTCATCA < 41bp 1 0.626378854554584 1 0.894201636314392 experiment 0.747242290890831 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HECW1 ENSG00000002746 CDS Human protein_coding chr7:43506109 chr7:43506110 synonymous SNV . 0 22 hm5C_associated_SNPs_29752 0 0 0 0 2 HECW1 chr7:43506167 5'GT 43506167 Upstream 58bp
chr11 117280365 117280365 1 + G A LUSC 117280351 + 117280331 117280371 41 CAGTCGACTCAACCCCGAGTCTCACCTCCCGCAAGATCCAC CAGTCGACTCAACCCCGAGTCTCACCTCCCGCAAAATCCAC < 41bp 1 0.133757074229452 1 0.0329798460006714 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP164 ENSG00000110274 CDS Human protein_coding chr11:117280351 chr11:117280365 synonymous SNV . 0 35 hm5C_associated_SNPs_29754 0 0 0 0 1 CEP164 chr11:117280334 3'AG 117280334 Downstream 32bp
chr11 4091353 4091353 1 + C T LUSC 4091338 + 4091318 4091358 41 GGCTGCTGGTTTGCCTATATCCAGAACCGTTACTCCAAGGA GGCTGCTGGTTTGCCTATATCCAGAACCGTTACTCTAAGGA < 41bp 1 0.628556842262116 1 0.74505478143692 experiment 0.742886315475768 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STIM1 ENSG00000167323 CDS Human protein_coding chr11:4091338 chr11:4091353 synonymous SNV . 0 36 hm5C_associated_SNPs_29755 0 0 1 0 2 STIM1 chr11:4091256 3'AG 4091256 Downstream 98bp
chr11 4091353 4091353 1 + C T LUSC 4091338 + 4091318 4091358 41 GGCTGCTGGTTTGCCTATATCCAGAACCGTTACTCCAAGGA GGCTGCTGGTTTGCCTATATCCAGAACCGTTACTCTAAGGA < 41bp 1 0.628556842262116 1 0.74505478143692 experiment 0.742886315475768 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STIM1 ENSG00000167323 CDS Human protein_coding chr11:4091338 chr11:4091353 synonymous SNV . 0 36 hm5C_associated_SNPs_29755 0 0 1 0 2 STIM1 chr11:4091433 5'GT 4091433 Upstream 81bp
chr5 43650627 43650627 1 + C T LUSC 43650617 + 43650597 43650637 41 GGTTGGCACTGATGGGAGGACATTTGTATCCTTCCACAACT GGTTGGCACTGATGGGAGGACATTTGTATCTTTCCACAACT < 41bp 1 0.143698621196251 1 0.0447129905223846 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43650617 chr5:43650627 nonsynonymous SNV 0.999 4 31 hm5C_associated_SNPs_29756 0 0 1 0 2 NNT chr5:43650579 3'AG 43650579 Downstream 49bp
chr5 43650627 43650627 1 + C T LUSC 43650617 + 43650597 43650637 41 GGTTGGCACTGATGGGAGGACATTTGTATCCTTCCACAACT GGTTGGCACTGATGGGAGGACATTTGTATCTTTCCACAACT < 41bp 1 0.143698621196251 1 0.0447129905223846 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43650617 chr5:43650627 nonsynonymous SNV 0.999 4 31 hm5C_associated_SNPs_29756 0 0 1 0 2 NNT chr5:43650689 5'GT 43650689 Upstream 63bp
chr1 162745458 162745458 1 + G A LUSC 162745469 + 162745449 162745489 41 TTTCTTAAGGAGATAAAGATCATGTCTCGGCTCAAGGACCC TTTCTTAAGAAGATAAAGATCATGTCTCGGCTCAAGGACCC < 41bp 1 0.23444396332504 1 0.0683629512786865 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162745469 chr1:162745458 nonsynonymous SNV 1.000 5 10 hm5C_associated_SNPs_29758 0 0 0 0 1 DDR2 chr1:162745442 3'AG 162745442 Downstream 17bp
chr12 111744784 111744784 1 + G A LUSC 111744768 + 111744748 111744788 41 CTCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACA CTCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAAGACA < 41bp 1 0.247801924510109 1 0.136761575937271 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744768 chr12:111744784 synonymous SNV . 0 37 hm5C_associated_SNPs_29762 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 60bp
chr12 111744784 111744784 1 + G A LUSC 111744769 + 111744749 111744789 41 TCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAG TCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAAGACAG < 41bp 1 0.27796885319609 1 0.32160547375679 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744769 chr12:111744784 synonymous SNV . 0 36 hm5C_associated_SNPs_29763 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 60bp
chr12 111744784 111744784 1 + G A LUSC 111744777 + 111744757 111744797 41 TCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCC TCGGCTGGAGGCCGCGCTGGCCTCCAAAGACAGGGAGATCC < 41bp 1 0.0294584625917605 1 0.150093466043472 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744777 chr12:111744784 synonymous SNV . 0 28 hm5C_associated_SNPs_29764 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 60bp
chr12 111744784 111744784 1 + G A LUSC 111744778 + 111744758 111744798 41 CGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCT CGGCTGGAGGCCGCGCTGGCCTCCAAAGACAGGGAGATCCT < 41bp 1 0.55240417733112 1 0.962910413742065 experiment 0.89519164533776 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744778 chr12:111744784 synonymous SNV . 0 27 hm5C_associated_SNPs_29765 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 60bp
chr12 111744784 111744784 1 + G A LUSC 111744780 + 111744760 111744800 41 GCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGC GCTGGAGGCCGCGCTGGCCTCCAAAGACAGGGAGATCCTGC < 41bp 1 0.37302826926081 1 0.718046426773071 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744780 chr12:111744784 synonymous SNV . 0 25 hm5C_associated_SNPs_29766 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 60bp
chr12 111744784 111744784 1 + G A LUSC 111744781 + 111744761 111744801 41 CTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGCG CTGGAGGCCGCGCTGGCCTCCAAAGACAGGGAGATCCTGCG < 41bp 1 0.199794120304163 1 0.850260496139526 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744781 chr12:111744784 synonymous SNV . 0 24 hm5C_associated_SNPs_29767 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 60bp
chr14 64898345 64898345 1 + C T LUSC 64898346 + 64898326 64898366 41 GGATATTTCATGAACTGACCCAGACAGACAAGGTAGGATGC GGATATTTCATGAACTGACTCAGACAGACAAGGTAGGATGC < 41bp 1 0.302984897461461 1 0.213146090507507 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64898346 chr14:64898345 synonymous SNV . 0 20 hm5C_associated_SNPs_29768 0 0 1 0 2 MTHFD1 chr14:64898250 3'AG 64898250 Downstream 96bp
chr14 64898345 64898345 1 + C T LUSC 64898346 + 64898326 64898366 41 GGATATTTCATGAACTGACCCAGACAGACAAGGTAGGATGC GGATATTTCATGAACTGACTCAGACAGACAAGGTAGGATGC < 41bp 1 0.302984897461461 1 0.213146090507507 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64898346 chr14:64898345 synonymous SNV . 0 20 hm5C_associated_SNPs_29768 0 0 1 0 2 MTHFD1 chr14:64898357 5'GT 64898357 Upstream 13bp
chr14 64898345 64898345 1 + C T LUSC 64898350 + 64898330 64898370 41 ATTTCATGAACTGACCCAGACAGACAAGGTAGGATGCCAAA ATTTCATGAACTGACTCAGACAGACAAGGTAGGATGCCAAA < 41bp 1 0.300917753365056 1 0.15534970164299 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64898350 chr14:64898345 synonymous SNV . 0 16 hm5C_associated_SNPs_29769 0 0 1 0 2 MTHFD1 chr14:64898250 3'AG 64898250 Downstream 96bp
chr14 64898345 64898345 1 + C T LUSC 64898350 + 64898330 64898370 41 ATTTCATGAACTGACCCAGACAGACAAGGTAGGATGCCAAA ATTTCATGAACTGACTCAGACAGACAAGGTAGGATGCCAAA < 41bp 1 0.300917753365056 1 0.15534970164299 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64898350 chr14:64898345 synonymous SNV . 0 16 hm5C_associated_SNPs_29769 0 0 1 0 2 MTHFD1 chr14:64898357 5'GT 64898357 Upstream 13bp
chr5 14498737 14498737 1 + C T LUSC 14498746 + 14498726 14498766 41 CGTCGGCCAGCCTGAGGGTCCTAGGTAAGCACCGTGCAACG CGTCGGCCAGCTTGAGGGTCCTAGGTAAGCACCGTGCAACG < 41bp 1 0.376823394196964 1 0.144581735134125 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14498746 chr5:14498737 synonymous SNV . 0 12 hm5C_associated_SNPs_29770 0 0 1 0 1 TRIO chr5:14498749 5'GT 14498749 Upstream 13bp
chr11 65062097 65062097 1 + C T LUSC 65062109 + 65062089 65062129 41 CTGCTTTTCCACCTGGGGGCCGAGGAGATCAGTAGGTAAGA CTGCTTTTTCACCTGGGGGCCGAGGAGATCAGTAGGTAAGA < 41bp 1 0.538060648210143 1 0.713124930858612 experiment 0.923878703579714 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLA2 ENSG00000014138 CDS Human protein_coding chr11:65062109 chr11:65062097 synonymous SNV . 0 9 hm5C_associated_SNPs_29771 0 0 1 0 2 POLA2 chr11:65062017 3'AG 65062017 Downstream 81bp
chr11 65062097 65062097 1 + C T LUSC 65062109 + 65062089 65062129 41 CTGCTTTTCCACCTGGGGGCCGAGGAGATCAGTAGGTAAGA CTGCTTTTTCACCTGGGGGCCGAGGAGATCAGTAGGTAAGA < 41bp 1 0.538060648210143 1 0.713124930858612 experiment 0.923878703579714 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLA2 ENSG00000014138 CDS Human protein_coding chr11:65062109 chr11:65062097 synonymous SNV . 0 9 hm5C_associated_SNPs_29771 0 0 1 0 2 POLA2 chr11:65062123 5'GT 65062123 Upstream 27bp
chr10 12162808 12162808 1 + C T LUSC 12162801 + 12162781 12162821 41 TATAGCTCCGTCTGGTGGGCCGGCCCCCTTTGCCAGTACCC TATAGCTCCGTCTGGTGGGCCGGCCCCTTTTGCCAGTACCC < 41bp 1 0.151864017364458 1 0.64630514383316 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12162801 chr10:12162808 nonsynonymous SNV 0.985 1 28 hm5C_associated_SNPs_29773 0 0 1 0 1 DHTKD1 chr10:12162786 3'AG 12162786 Downstream 23bp
chr6 145157481 145157481 1 + G A LUSC 145157491 + 145157471 145157511 41 CAGCACCTCCGAAGGGGGCTCCCTGTCGGTTCACCGCCAGA CAGCACCTCCAAAGGGGGCTCCCTGTCGGTTCACCGCCAGA < 41bp 1 0.0525889440833629 1 0.23792564868927 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:145157491 chr6:145157481 nonsynonymous SNV 0.991 0 11 hm5C_associated_SNPs_29774 0 0 0 0 1 UTRN chr6:145157437 3'AG 145157437 Downstream 45bp
chr19 39196706 39196706 1 + C T LUSC 39196704 + 39196684 39196724 41 AGACCTCGGCCAAGGAAGGGCTCCTTCTCTGGTGCCAGAGA AGACCTCGGCCAAGGAAGGGCTTCTTCTCTGGTGCCAGAGA < 41bp 1 0.0465839089655632 1 0.16102933883667 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39196704 chr19:39196706 synonymous SNV . 0 23 hm5C_associated_SNPs_29775 0 0 1 0 2 ACTN4 chr19:39196684 3'AG 39196684 Downstream 23bp
chr19 39196706 39196706 1 + C T LUSC 39196704 + 39196684 39196724 41 AGACCTCGGCCAAGGAAGGGCTCCTTCTCTGGTGCCAGAGA AGACCTCGGCCAAGGAAGGGCTTCTTCTCTGGTGCCAGAGA < 41bp 1 0.0465839089655632 1 0.16102933883667 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39196704 chr19:39196706 synonymous SNV . 0 23 hm5C_associated_SNPs_29775 0 0 1 0 2 ACTN4 chr19:39196771 5'GT 39196771 Upstream 66bp
chr19 41510013 41510013 1 + G C LUSC 41510016 + 41509996 41510036 41 CTTGTGGACAAGGCTGAGGCCTTCTCTGGCCGGGGAAAAAT CTTGTGGACAAGGCTGACGCCTTCTCTGGCCGGGGAAAAAT < 41bp 1 0.212063625059775 1 0.0892616212368011 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41510016 chr19:41510013 nonsynonymous SNV 0.166 0 18 hm5C_associated_SNPs_29776 0 0 0 0 1 CYP2B6 chr19:41510068 5'GT 41510068 Upstream 56bp
chr16 30081499 30081499 1 + G C LUSC 30081505 + 30081485 30081525 41 TGGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACG TGGGGCTGCTGCCACCGAGTCCCTCTTCGTCTCTAACCACG < 41bp 1 0.0609171114170109 1 0.0553370416164398 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081505 chr16:30081499 nonsynonymous SNV 0.986 1 15 hm5C_associated_SNPs_29778 0 0 1 0 1 ALDOA chr16:30081438 3'AG 30081438 Downstream 62bp
chr16 30081499 30081499 1 + G C LUSC 30081506 + 30081486 30081526 41 GGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGC GGGGCTGCTGCCACCGAGTCCCTCTTCGTCTCTAACCACGC < 41bp 1 0.0480661172093564 1 0.0564676523208618 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081506 chr16:30081499 nonsynonymous SNV 0.986 1 14 hm5C_associated_SNPs_29779 0 0 1 0 1 ALDOA chr16:30081438 3'AG 30081438 Downstream 62bp
chr16 30081499 30081499 1 + G C LUSC 30081507 + 30081487 30081527 41 GGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGCC GGGCTGCTGCCACCGAGTCCCTCTTCGTCTCTAACCACGCC < 41bp 1 0.165536895810781 1 0.0583580434322357 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081507 chr16:30081499 nonsynonymous SNV 0.986 1 13 hm5C_associated_SNPs_29780 0 0 1 0 1 ALDOA chr16:30081438 3'AG 30081438 Downstream 62bp
chr16 30081499 30081499 1 + G C LUSC 30081509 + 30081489 30081529 41 GCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGCCTA GCTGCTGCCACCGAGTCCCTCTTCGTCTCTAACCACGCCTA < 41bp 1 0.433706638052606 1 0.108430206775665 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081509 chr16:30081499 nonsynonymous SNV 0.986 1 11 hm5C_associated_SNPs_29781 0 0 1 0 1 ALDOA chr16:30081438 3'AG 30081438 Downstream 62bp
chr14 90437544 90437544 1 + G C LUSC 90437526 + 90437506 90437546 41 GCTCTCTTTTTAGGAAGAAGCCAATCCTGCTTGTGCATGGT GCTCTCTTTTTAGGAAGAAGCCAATCCTGCTTGTGCATCGT < 41bp 1 0.0751261118822275 1 0.125435292720795 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TDP1 ENSG00000042088 CDS Human protein_coding chr14:90437526 chr14:90437544 nonsynonymous SNV 0.987 4 39 hm5C_associated_SNPs_29784 0 0 1 0 2 TDP1 chr14:90437519 3'AG 90437519 Downstream 26bp
chr14 90437544 90437544 1 + G C LUSC 90437526 + 90437506 90437546 41 GCTCTCTTTTTAGGAAGAAGCCAATCCTGCTTGTGCATGGT GCTCTCTTTTTAGGAAGAAGCCAATCCTGCTTGTGCATCGT < 41bp 1 0.0751261118822275 1 0.125435292720795 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TDP1 ENSG00000042088 CDS Human protein_coding chr14:90437526 chr14:90437544 nonsynonymous SNV 0.987 4 39 hm5C_associated_SNPs_29784 0 0 1 0 2 TDP1 chr14:90437615 5'GT 90437615 Upstream 72bp
chr22 38282852 38282852 1 + G C LUSC 38282832 + 38282812 38282852 41 ATGGGGATTTCTTCATCCGTCAGATCCACAAATTTGAGGAG ATGGGGATTTCTTCATCCGTCAGATCCACAAATTTGAGGAC < 41bp 1 0.411579182622846 1 0.734990000724792 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3L ENSG00000100129 CDS Human protein_coding chr22:38282832 chr22:38282852 nonsynonymous SNV 0.993 1 41 hm5C_associated_SNPs_29787 0 0 1 0 2 EIF3L chr22:38282772 3'AG 38282772 Downstream 81bp
chr22 38282852 38282852 1 + G C LUSC 38282832 + 38282812 38282852 41 ATGGGGATTTCTTCATCCGTCAGATCCACAAATTTGAGGAG ATGGGGATTTCTTCATCCGTCAGATCCACAAATTTGAGGAC < 41bp 1 0.411579182622846 1 0.734990000724792 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3L ENSG00000100129 CDS Human protein_coding chr22:38282832 chr22:38282852 nonsynonymous SNV 0.993 1 41 hm5C_associated_SNPs_29787 0 0 1 0 2 EIF3L chr22:38282852 5'GT 38282852 Upstream 1bp
chr20 4679913 4679913 1 + G C LUSC 4679908 + 4679888 4679928 41 ATGCTGGTTCTCTTTGTGGCCACATGGAGTGACCTGGGCCT ATGCTGGTTCTCTTTGTGGCCACATCGAGTGACCTGGGCCT < 41bp 1 0.546881538825059 1 0.597430348396301 experiment 0.906236922349882 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRNP ENSG00000171867 CDS Human protein_coding chr20:4679908 chr20:4679913 nonsynonymous SNV 0.999 2 26 hm5C_associated_SNPs_29788 0 0 1 0 1 PRNP chr20:4679862 3'AG 4679862 Downstream 52bp
chr20 39746907 39746907 1 + G C LUSC 39746895 + 39746875 39746915 41 GTAACCATCAGAGGGCACCACCAAAAACTTTTGAGAAGTCT GTAACCATCAGAGGGCACCACCAAAAACTTTTCAGAAGTCT < 41bp 1 0.192491776843362 1 0.240773171186447 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39746895 chr20:39746907 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_29789 0 0 0 0 2 TOP1 chr20:39746809 3'AG 39746809 Downstream 99bp
chr20 39746907 39746907 1 + G C LUSC 39746895 + 39746875 39746915 41 GTAACCATCAGAGGGCACCACCAAAAACTTTTGAGAAGTCT GTAACCATCAGAGGGCACCACCAAAAACTTTTCAGAAGTCT < 41bp 1 0.192491776843362 1 0.240773171186447 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39746895 chr20:39746907 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_29789 0 0 0 0 2 TOP1 chr20:39746936 5'GT 39746936 Upstream 30bp
chr11 44626970 44626970 1 + C A LUSC 44626956 + 44626936 44626976 41 CCCAGGTGACGGCCGGGGCCCTCTTCTACTTCAACATGGGC CCCAGGTGACGGCCGGGGCCCTCTTCTACTTCAAAATGGGC < 41bp 1 0.078916223427483 1 0.0518943965435028 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CD82 ENSG00000085117 CDS Human protein_coding chr11:44626956 chr11:44626970 nonsynonymous SNV 0.631 1 35 hm5C_associated_SNPs_29790 0 0 1 0 2 CD82 chr11:44626905 3'AG 44626905 Downstream 66bp
chr11 44626970 44626970 1 + C A LUSC 44626956 + 44626936 44626976 41 CCCAGGTGACGGCCGGGGCCCTCTTCTACTTCAACATGGGC CCCAGGTGACGGCCGGGGCCCTCTTCTACTTCAAAATGGGC < 41bp 1 0.078916223427483 1 0.0518943965435028 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CD82 ENSG00000085117 CDS Human protein_coding chr11:44626956 chr11:44626970 nonsynonymous SNV 0.631 1 35 hm5C_associated_SNPs_29790 0 0 1 0 2 CD82 chr11:44626979 5'GT 44626979 Upstream 10bp
chr10 104160448 104160448 1 + G T LUSC 104160433 + 104160413 104160453 41 ACTGTATCCAGTACACCTGGCAGTCCGAGCCCGAAGCCCTG ACTGTATCCAGTACACCTGGCAGTCCGAGCCCGAATCCCTG < 41bp 1 0.0687879151580524 1 0.0229989290237427 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160433 chr10:104160448 nonsynonymous SNV 0.959 4 36 hm5C_associated_SNPs_29791 0 0 0 0 1 NFKB2 chr10:104160412 3'AG 104160412 Downstream 37bp
chr5 139917046 139917046 1 + C A LUSC 139917055 + 139917035 139917075 41 GATACCTCCCCCAATTGGAACAGAGAGACTGGCCCGAATTC GATACCTCCCCAAATTGGAACAGAGAGACTGGCCCGAATTC < 41bp 1 0.261647533138294 1 0.671898066997528 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139917055 chr5:139917046 nonsynonymous SNV 0.846 4 12 hm5C_associated_SNPs_29793 0 0 1 0 1 ANKHD1;ANKHD1-EIF4EBP3 chr5:139916974 3'AG 139916974 Downstream 73bp
chrX 47424386 47424386 1 + A G LUSC 47424395 + 47424375 47424415 41 TGGCATCAGGTACGGAAGACCTTCTTCAGCCTGGCGTTCTG TGGCATCAGGTGCGGAAGACCTTCTTCAGCCTGGCGTTCTG < 41bp 1 0.364265871590796 1 0.331089496612549 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARAF ENSG00000078061 CDS Human protein_coding chrX:47424395 chrX:47424386 synonymous SNV . 0 12 hm5C_associated_SNPs_29794 0 0 1 0 1 ARAF chrX:47424384 3'AG 47424384 Downstream 3bp
chrX 153533740 153533740 1 + G T LUSC 153533726 + 153533706 153533746 41 TCTACATCATGAGGTACAAGCAGTCAGATCCAGAGAATCCG TCTACATCATGAGGTACAAGCAGTCAGATCCAGATAATCCG < 41bp 1 0.18512669018532 1 0.264067858457565 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153533726 chrX:153533740 nonsynonymous SNV 0.033 0 35 hm5C_associated_SNPs_29796 0 0 0 0 3 TKTL1 chrX:153533656 3'AG 153533656 Downstream 85bp
chrX 153533740 153533740 1 + G T LUSC 153533726 + 153533706 153533746 41 TCTACATCATGAGGTACAAGCAGTCAGATCCAGAGAATCCG TCTACATCATGAGGTACAAGCAGTCAGATCCAGATAATCCG < 41bp 1 0.18512669018532 1 0.264067858457565 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153533726 chrX:153533740 nonsynonymous SNV 0.033 0 35 hm5C_associated_SNPs_29796 0 0 0 0 3 TKTL1 chrX:153533674 3'AG 153533674 Downstream 67bp
chrX 153533740 153533740 1 + G T LUSC 153533726 + 153533706 153533746 41 TCTACATCATGAGGTACAAGCAGTCAGATCCAGAGAATCCG TCTACATCATGAGGTACAAGCAGTCAGATCCAGATAATCCG < 41bp 1 0.18512669018532 1 0.264067858457565 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153533726 chrX:153533740 nonsynonymous SNV 0.033 0 35 hm5C_associated_SNPs_29796 0 0 0 0 3 TKTL1 chrX:153533773 5'GT 153533773 Upstream 34bp
chr13 92051426 92051426 1 + G T LUSC 92051411 + 92051391 92051431 41 GAAGAAGTTCGGAAACTTTTCCAGTGGCGGCTGCTGGGAGC GAAGAAGTTCGGAAACTTTTCCAGTGGCGGCTGCTTGGAGC < 41bp 1 0.490906478756937 1 0.779156088829041 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPC5 ENSG00000179399 CDS Human protein_coding chr13:92051411 chr13:92051426 synonymous SNV . 0 36 hm5C_associated_SNPs_29797 0 0 0 0 1 GPC5 chr13:92051463 5'GT 92051463 Upstream 38bp
chr7 36466549 36466549 1 + G C LUSC 36466562 + 36466542 36466582 41 GGTCTTAGTGCTGTGCGAACCAGCAACTTCGCCCTTGTTGG GGTCTTACTGCTGTGCGAACCAGCAACTTCGCCCTTGTTGG < 41bp 1 0.752851074776425 1 0.868046760559082 experiment 0.494297850447151 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36466562 chr7:36466549 nonsynonymous SNV 0.176 0 8 hm5C_associated_SNPs_29798 0 0 1 0 2 ANLN chr7:36466525 3'AG 36466525 Downstream 25bp
chr7 36466549 36466549 1 + G C LUSC 36466562 + 36466542 36466582 41 GGTCTTAGTGCTGTGCGAACCAGCAACTTCGCCCTTGTTGG GGTCTTACTGCTGTGCGAACCAGCAACTTCGCCCTTGTTGG < 41bp 1 0.752851074776425 1 0.868046760559082 experiment 0.494297850447151 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36466562 chr7:36466549 nonsynonymous SNV 0.176 0 8 hm5C_associated_SNPs_29798 0 0 1 0 2 ANLN chr7:36466637 5'GT 36466637 Upstream 89bp
chr14 73637516 73637516 1 + A G LUSC 73637529 + 73637509 73637549 41 ACAATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTT ACAATAGGGAACGGCAGGAGCACAACGACAGACGGAGCCTT < 41bp 1 0.692378403945098 1 0.224523484706879 experiment 0.615243192109804 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637529 chr14:73637516 synonymous SNV . 0 8 hm5C_associated_SNPs_29809 0 0 1 0 1 PSEN1 chr14:73637505 3'AG 73637505 Downstream 12bp
chr14 73637516 73637516 1 + A G LUSC 73637531 + 73637511 73637551 41 AATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGG AATAGGGAACGGCAGGAGCACAACGACAGACGGAGCCTTGG < 41bp 1 0.642139980111368 1 0.293925404548645 experiment 0.715720039777265 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637531 chr14:73637516 synonymous SNV . 0 6 hm5C_associated_SNPs_29810 0 0 1 0 1 PSEN1 chr14:73637505 3'AG 73637505 Downstream 12bp
chr3 50131258 50131258 1 + A G LUSC 50131269 + 50131249 50131289 41 GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCAT GAGAGGGAGGGCAAGACCATCATGCTGCGCGGCCTTCCCAT < 41bp 1 0.507773673200949 1 0.424188315868378 experiment 0.984452653598101 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131269 chr3:50131258 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_29811 0 0 1 0 2 RBM5 chr3:50131254 3'AG 50131254 Downstream 5bp
chr3 50131258 50131258 1 + A G LUSC 50131269 + 50131249 50131289 41 GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCAT GAGAGGGAGGGCAAGACCATCATGCTGCGCGGCCTTCCCAT < 41bp 1 0.507773673200949 1 0.424188315868378 experiment 0.984452653598101 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131269 chr3:50131258 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_29811 0 0 1 0 2 RBM5 chr3:50131308 5'GT 50131308 Upstream 51bp
chr10 71146157 71146157 1 + G T LUSC 71146158 + 71146138 71146178 41 AGTCACCTTACTAAGGGATGCGATAAAAAGGAGAGAGGTAA AGTCACCTTACTAAGGGATTCGATAAAAAGGAGAGAGGTAA < 41bp 1 0.243563704952648 1 0.358639746904373 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HK1 ENSG00000156515 CDS Human protein_coding chr10:71146158 chr10:71146157 nonsynonymous SNV 0.552 3 20 hm5C_associated_SNPs_29812 0 0 1 0 2 HK1 chr10:71146079 3'AG 71146079 Downstream 79bp
chr10 71146157 71146157 1 + G T LUSC 71146158 + 71146138 71146178 41 AGTCACCTTACTAAGGGATGCGATAAAAAGGAGAGAGGTAA AGTCACCTTACTAAGGGATTCGATAAAAAGGAGAGAGGTAA < 41bp 1 0.243563704952648 1 0.358639746904373 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HK1 ENSG00000156515 CDS Human protein_coding chr10:71146158 chr10:71146157 nonsynonymous SNV 0.552 3 20 hm5C_associated_SNPs_29812 0 0 1 0 2 HK1 chr10:71146174 5'GT 71146174 Upstream 18bp
chr5 7885876 7885876 1 + T C LUSC 7885861 + 7885841 7885881 41 GATGCCTTCAGCGTGATCTGCCCTAACAGTGATTCTGAGGT GATGCCTTCAGCGTGATCTGCCCTAACAGTGATTCCGAGGT < 41bp 1 0.290767752942409 1 0.0379151403903961 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885861 chr5:7885876 synonymous SNV . 0 36 hm5C_associated_SNPs_29813 0 0 1 0 1 MTRR chr5:7885814 3'AG 7885814 Downstream 63bp
chr5 7885876 7885876 1 + T C LUSC 7885862 + 7885842 7885882 41 ATGCCTTCAGCGTGATCTGCCCTAACAGTGATTCTGAGGTA ATGCCTTCAGCGTGATCTGCCCTAACAGTGATTCCGAGGTA < 41bp 1 0.221402131354659 1 0.0805935561656952 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885862 chr5:7885876 synonymous SNV . 0 35 hm5C_associated_SNPs_29814 0 0 1 0 1 MTRR chr5:7885814 3'AG 7885814 Downstream 63bp
chr5 7885876 7885876 1 + T C LUSC 7885863 + 7885843 7885883 41 TGCCTTCAGCGTGATCTGCCCTAACAGTGATTCTGAGGTAC TGCCTTCAGCGTGATCTGCCCTAACAGTGATTCCGAGGTAC < 41bp 1 0.302729238253002 1 0.0496813356876373 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885863 chr5:7885876 synonymous SNV . 0 34 hm5C_associated_SNPs_29815 0 0 1 0 1 MTRR chr5:7885814 3'AG 7885814 Downstream 63bp
chr5 7885876 7885876 1 + T C LUSC 7885875 + 7885855 7885895 41 GATCTGCCCTAACAGTGATTCTGAGGTACAAAGCCTACTCC GATCTGCCCTAACAGTGATTCCGAGGTACAAAGCCTACTCC < 41bp 1 0.570272441136896 1 0.700427949428558 experiment 0.859455117726208 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885875 chr5:7885876 synonymous SNV . 0 22 hm5C_associated_SNPs_29816 0 0 1 0 1 MTRR chr5:7885814 3'AG 7885814 Downstream 63bp
chr19 33605294 33605294 1 + A T LUSC 33605274 + 33605254 33605294 41 CCACCTAAACAACAGTCCAGCCCCTTAGTAAACAAAGAGGA CCACCTAAACAACAGTCCAGCCCCTTAGTAAACAAAGAGGT < 41bp 1 0.0706666513917039 1 0.0660060048103333 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33605274 chr19:33605294 nonsynonymous SNV 0.110 0 41 hm5C_associated_SNPs_29817 0 0 1 0 1 GPATCH1 chr19:33605325 5'GT 33605325 Upstream 32bp
chr1 235543450 235543450 1 + T C LUSC 235543456 + 235543436 235543476 41 TTTTGCTGGTGTTGTCCCTCCCGTGGCAGGTAAGCAATTAT TTTTGCTGGTGTTGCCCCTCCCGTGGCAGGTAAGCAATTAT < 41bp 1 0.170251775650868 1 0.583945035934448 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235543456 chr1:235543450 nonsynonymous SNV 0.373 5 15 hm5C_associated_SNPs_29818 0 0 1 0 1 TBCE chr1:235543464 5'GT 235543464 Upstream 15bp
chr9 78506222 78506222 1 + A G LUSC 78506235 + 78506215 78506255 41 GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT GCAGTCAGAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT < 41bp 1 0.0573210426248113 1 0.0337262153625488 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78506235 chr9:78506222 nonsynonymous SNV 0.998 0 8 hm5C_associated_SNPs_29820 0 0 1 0 1 PCSK5 chr9:78506289 5'GT 78506289 Upstream 68bp
chr11 68204464 68204464 1 + T C LUSC 68204450 + 68204430 68204470 41 CCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG CCCCGACTGTATCGACGGCTCCGACGAGCTCATGCGTGGTG < 41bp 1 0.147807974995742 1 0.0969032645225525 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204450 chr11:68204464 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_29822 0 0 0 0 1 LRP5 chr11:68204467 5'GT 68204467 Upstream 4bp
chr11 68204464 68204464 1 + T C LUSC 68204451 + 68204431 68204471 41 CCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTGA CCCGACTGTATCGACGGCTCCGACGAGCTCATGCGTGGTGA < 41bp 1 0.418864959571918 1 0.343288421630859 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204451 chr11:68204464 nonsynonymous SNV 0.999 4 34 hm5C_associated_SNPs_29823 0 0 0 0 1 LRP5 chr11:68204467 5'GT 68204467 Upstream 4bp
chr3 186504021 186504021 1 + C G LUSC 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATGAAAT < 41bp 1 0.151228274736849 1 0.204333871603012 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186504021 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_29824 0 0 1 6 2 EIF4A2 chr3:186503953 3'AG 186503953 Downstream 69bp
chr3 186504021 186504021 1 + C G LUSC 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATGAAAT < 41bp 1 0.151228274736849 1 0.204333871603012 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186504021 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_29824 0 0 1 6 2 EIF4A2 chr3:186504062 5'GT 186504062 Upstream 42bp
chr19 36124064 36124064 1 + T G LUSC 36124053 + 36124033 36124073 41 CTCACCAGGCCCTCGTGGGCCCCCCTCTGCCTGGGCCCCCT CTCACCAGGCCCTCGTGGGCCCCCCTCTGCCGGGGCCCCCT < 41bp 1 0.246638777642147 1 0.061575710773468 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124053 chr19:36124064 synonymous SNV . 0 32 hm5C_associated_SNPs_29825 0 0 1 0 4 RBM42 chr19:36123979 3'AG 36123979 Downstream 86bp
chr19 36124064 36124064 1 + T G LUSC 36124053 + 36124033 36124073 41 CTCACCAGGCCCTCGTGGGCCCCCCTCTGCCTGGGCCCCCT CTCACCAGGCCCTCGTGGGCCCCCCTCTGCCGGGGCCCCCT < 41bp 1 0.246638777642147 1 0.061575710773468 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124053 chr19:36124064 synonymous SNV . 0 32 hm5C_associated_SNPs_29825 0 0 1 0 4 RBM42 chr19:36124000 3'AG 36124000 Downstream 65bp
chr19 36124064 36124064 1 + T G LUSC 36124053 + 36124033 36124073 41 CTCACCAGGCCCTCGTGGGCCCCCCTCTGCCTGGGCCCCCT CTCACCAGGCCCTCGTGGGCCCCCCTCTGCCGGGGCCCCCT < 41bp 1 0.246638777642147 1 0.061575710773468 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124053 chr19:36124064 synonymous SNV . 0 32 hm5C_associated_SNPs_29825 0 0 1 0 4 RBM42 chr19:36124003 3'AG 36124003 Downstream 62bp
chr19 36124064 36124064 1 + T G LUSC 36124053 + 36124033 36124073 41 CTCACCAGGCCCTCGTGGGCCCCCCTCTGCCTGGGCCCCCT CTCACCAGGCCCTCGTGGGCCCCCCTCTGCCGGGGCCCCCT < 41bp 1 0.246638777642147 1 0.061575710773468 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124053 chr19:36124064 synonymous SNV . 0 32 hm5C_associated_SNPs_29825 0 0 1 0 4 RBM42 chr19:36124154 5'GT 36124154 Upstream 91bp
chr10 17278303 17278303 1 + G T LUSC 17278316 + 17278296 17278336 41 CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTCAAAA CTAATCTTGATTCACTCCCTCTGGTTGATACCCACTCAAAA < 41bp 1 0.273901106176118 1 0.714184761047363 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278316 chr10:17278303 synonymous SNV . 0 8 hm5C_associated_SNPs_29826 0 0 1 0 2 VIM chr10:17278293 3'AG 17278293 Downstream 11bp
chr10 17278303 17278303 1 + G T LUSC 17278316 + 17278296 17278336 41 CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTCAAAA CTAATCTTGATTCACTCCCTCTGGTTGATACCCACTCAAAA < 41bp 1 0.273901106176118 1 0.714184761047363 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278316 chr10:17278303 synonymous SNV . 0 8 hm5C_associated_SNPs_29826 0 0 1 0 2 VIM chr10:17278378 5'GT 17278378 Upstream 76bp
chr10 17278304 17278304 1 + G T LUSC 17278316 + 17278296 17278336 41 CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTCAAAA CTAATCTGTATTCACTCCCTCTGGTTGATACCCACTCAAAA < 41bp 1 0.25027204857785 1 0.724134087562561 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278316 chr10:17278304 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_29827 0 0 1 0 2 VIM chr10:17278293 3'AG 17278293 Downstream 12bp
chr10 17278304 17278304 1 + G T LUSC 17278316 + 17278296 17278336 41 CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTCAAAA CTAATCTGTATTCACTCCCTCTGGTTGATACCCACTCAAAA < 41bp 1 0.25027204857785 1 0.724134087562561 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278316 chr10:17278304 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_29827 0 0 1 0 2 VIM chr10:17278378 5'GT 17278378 Upstream 75bp
chr3 184038429 184038429 1 + A T LUSC 184038413 + 184038393 184038433 41 TCATCTTATAGCTTTCTTTCCCCAGATCCGAATTCGAGATC TCATCTTATAGCTTTCTTTCCCCAGATCCGAATTCGTGATC < 41bp 1 0.142685697114709 1 0.425442755222321 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184038413 chr3:184038429 synonymous SNV . 0 37 hm5C_associated_SNPs_29828 0 0 1 0 1 EIF4G1 chr3:184038418 3'AG 184038418 Downstream 12bp
chr12 6638690 6638690 1 + C G LUSC 6638688 + 6638668 6638708 41 CCTTCCTGCAGACAGCTCCTCTCCTACATCACCAAGGACAA CCTTCCTGCAGACAGCTCCTCTGCTACATCACCAAGGACAA < 41bp 1 0.327070604843095 1 0.048491358757019 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6638688 chr12:6638690 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_29829 0 0 1 0 2 NCAPD2 chr12:6638679 3'AG 6638679 Downstream 12bp
chr12 6638690 6638690 1 + C G LUSC 6638688 + 6638668 6638708 41 CCTTCCTGCAGACAGCTCCTCTCCTACATCACCAAGGACAA CCTTCCTGCAGACAGCTCCTCTGCTACATCACCAAGGACAA < 41bp 1 0.327070604843095 1 0.048491358757019 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6638688 chr12:6638690 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_29829 0 0 1 0 2 NCAPD2 chr12:6638759 5'GT 6638759 Upstream 70bp
chr7 135291499 135291499 1 + G T LUSC 135291502 + 135291482 135291522 41 GTGATTTCTGCATTAAGGATCAGAACTTGAAAAGAAATTAG GTGATTTCTGCATTAAGTATCAGAACTTGAAAAGAAATTAG < 41bp 1 0.25362006236913 1 0.773101210594177 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135291502 chr7:135291499 nonsynonymous SNV 0.809 0 18 hm5C_associated_SNPs_29830 0 0 1 0 1 NUP205 chr7:135291499 3'AG 135291499 Downstream 1bp
chr8 107754456 107754456 1 + G C LUSC 107754474 + 107754454 107754494 41 TTGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC TTCGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC < 41bp 1 0.0737306699619948 1 0.0759952664375305 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754474 chr8:107754456 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_29831 0 0 0 1 2 OXR1 chr8:107754450 3'AG 107754450 Downstream 7bp
chr8 107754456 107754456 1 + G C LUSC 107754474 + 107754454 107754494 41 TTGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC TTCGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC < 41bp 1 0.0737306699619948 1 0.0759952664375305 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754474 chr8:107754456 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_29831 0 0 0 1 2 OXR1 chr8:107754545 5'GT 107754545 Upstream 90bp
chr8 107754456 107754456 1 + G C LUSC 107754475 + 107754455 107754495 41 TGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT TCGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT < 41bp 1 0.163032190060178 1 0.0948624610900879 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754475 chr8:107754456 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_29832 0 0 0 1 2 OXR1 chr8:107754450 3'AG 107754450 Downstream 7bp
chr8 107754456 107754456 1 + G C LUSC 107754475 + 107754455 107754495 41 TGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT TCGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT < 41bp 1 0.163032190060178 1 0.0948624610900879 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754475 chr8:107754456 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_29832 0 0 0 1 2 OXR1 chr8:107754545 5'GT 107754545 Upstream 90bp
chr8 48874232 48874232 1 + A G LUSC 48874231 + 48874211 48874251 41 TTTCCAGCCCTCCCCAAATGCATTCTTCAGGTGCGTGTCTG TTTCCAGCCCTCCCCAAATGCGTTCTTCAGGTGCGTGTCTG < 41bp 1 0.107990341758117 1 0.0746995806694031 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874231 chr8:48874232 nonsynonymous SNV 0.087 0 22 hm5C_associated_SNPs_29833 0 0 1 0 1 MCM4 chr8:48874240 5'GT 48874240 Upstream 9bp
chr14 100367334 100367334 1 + T G LUSC 100367316 + 100367296 100367336 41 TCTGTGACATTGAATACTCTCCACGTCATTGGAATAGGTTT TCTGTGACATTGAATACTCTCCACGTCATTGGAATAGGGTT < 41bp 1 0.218335815579327 1 0.255189836025238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EML1 ENSG00000066629 CDS Human protein_coding chr14:100367316 chr14:100367334 synonymous SNV . 0 39 hm5C_associated_SNPs_29834 0 0 1 0 2 EML1 chr14:100367266 3'AG 100367266 Downstream 69bp
chr14 100367334 100367334 1 + T G LUSC 100367316 + 100367296 100367336 41 TCTGTGACATTGAATACTCTCCACGTCATTGGAATAGGTTT TCTGTGACATTGAATACTCTCCACGTCATTGGAATAGGGTT < 41bp 1 0.218335815579327 1 0.255189836025238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EML1 ENSG00000066629 CDS Human protein_coding chr14:100367316 chr14:100367334 synonymous SNV . 0 39 hm5C_associated_SNPs_29834 0 0 1 0 2 EML1 chr14:100367376 5'GT 100367376 Upstream 43bp
chr22 29533335 29533335 1 + G A LUSC 29533346 + 29533326 29533366 41 ACAGCTCTCGTGGGCGCCTGCGGTGGGAACTACTCAGCCAT ACAGCTCTCATGGGCGCCTGCGGTGGGAACTACTCAGCCAT < 41bp 1 0.461849558626202 1 0.566617488861084 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KREMEN1 ENSG00000183762 CDS Human protein_coding chr22:29533346 chr22:29533335 nonsynonymous SNV 0.707 1 10 hm5C_associated_SNPs_29835 0 0 0 0 1 KREMEN1 chr22:29533330 3'AG 29533330 Downstream 6bp
chr17 79414117 79414117 1 + A C LUSC 79414114 + 79414094 79414134 41 GGCCTGGGCTTCTCCCTACCCTCAGACGTGCACTCTTCTAA GGCCTGGGCTTCTCCCTACCCTCCGACGTGCACTCTTCTAA < 41bp 1 0.393564176681317 1 0.763557553291321 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79414114 chr17:79414117 synonymous SNV . 0 24 hm5C_associated_SNPs_29836 0 0 1 0 1 BAHCC1 chr17:79414062 3'AG 79414062 Downstream 56bp
chr7 130021492 130021492 1 + G T LUSC 130021476 + 130021456 130021496 41 TCTTGTCCTCCCCAGCTGGACTTCTGGCGGGGGCCTGCCCA TCTTGTCCTCCCCAGCTGGACTTCTGGCGGGGGCCTTCCCA < 41bp 1 0.376557561780177 1 0.0597637593746185 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021476 chr7:130021492 nonsynonymous SNV 0.117 0 37 hm5C_associated_SNPs_29839 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 22bp
chr7 130021492 130021492 1 + G T LUSC 130021476 + 130021456 130021496 41 TCTTGTCCTCCCCAGCTGGACTTCTGGCGGGGGCCTGCCCA TCTTGTCCTCCCCAGCTGGACTTCTGGCGGGGGCCTTCCCA < 41bp 1 0.376557561780177 1 0.0597637593746185 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021476 chr7:130021492 nonsynonymous SNV 0.117 0 37 hm5C_associated_SNPs_29839 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 30bp
chr7 130021492 130021492 1 + G T LUSC 130021489 + 130021469 130021509 41 AGCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCC AGCTGGACTTCTGGCGGGGGCCTTCCCACCCTGGCTCCCCC < 41bp 1 0.0270879649151416 1 0.139881014823914 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021489 chr7:130021492 nonsynonymous SNV 0.117 0 24 hm5C_associated_SNPs_29840 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 22bp
chr7 130021492 130021492 1 + G T LUSC 130021489 + 130021469 130021509 41 AGCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCC AGCTGGACTTCTGGCGGGGGCCTTCCCACCCTGGCTCCCCC < 41bp 1 0.0270879649151416 1 0.139881014823914 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021489 chr7:130021492 nonsynonymous SNV 0.117 0 24 hm5C_associated_SNPs_29840 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 30bp
chr7 130021492 130021492 1 + G T LUSC 130021490 + 130021470 130021510 41 GCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCA GCTGGACTTCTGGCGGGGGCCTTCCCACCCTGGCTCCCCCA < 41bp 1 0.215402459071568 1 0.208793759346008 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021490 chr7:130021492 nonsynonymous SNV 0.117 0 23 hm5C_associated_SNPs_29841 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 22bp
chr7 130021492 130021492 1 + G T LUSC 130021490 + 130021470 130021510 41 GCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCA GCTGGACTTCTGGCGGGGGCCTTCCCACCCTGGCTCCCCCA < 41bp 1 0.215402459071568 1 0.208793759346008 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021490 chr7:130021492 nonsynonymous SNV 0.117 0 23 hm5C_associated_SNPs_29841 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 30bp
chr7 130021492 130021492 1 + G T LUSC 130021493 + 130021473 130021513 41 GGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCG GGACTTCTGGCGGGGGCCTTCCCACCCTGGCTCCCCCATCG < 41bp 1 0.393678839406885 1 0.515161037445068 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021493 chr7:130021492 nonsynonymous SNV 0.117 0 20 hm5C_associated_SNPs_29842 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 22bp
chr7 130021492 130021492 1 + G T LUSC 130021493 + 130021473 130021513 41 GGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCG GGACTTCTGGCGGGGGCCTTCCCACCCTGGCTCCCCCATCG < 41bp 1 0.393678839406885 1 0.515161037445068 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021493 chr7:130021492 nonsynonymous SNV 0.117 0 20 hm5C_associated_SNPs_29842 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 30bp
chr7 130021492 130021492 1 + G T LUSC 130021494 + 130021474 130021514 41 GACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGA GACTTCTGGCGGGGGCCTTCCCACCCTGGCTCCCCCATCGA < 41bp 1 0.370819689877212 1 0.161924540996552 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021494 chr7:130021492 nonsynonymous SNV 0.117 0 19 hm5C_associated_SNPs_29843 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 22bp
chr7 130021492 130021492 1 + G T LUSC 130021494 + 130021474 130021514 41 GACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGA GACTTCTGGCGGGGGCCTTCCCACCCTGGCTCCCCCATCGA < 41bp 1 0.370819689877212 1 0.161924540996552 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021494 chr7:130021492 nonsynonymous SNV 0.117 0 19 hm5C_associated_SNPs_29843 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 30bp
chr7 130021492 130021492 1 + G T LUSC 130021497 + 130021477 130021517 41 TTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGT TTCTGGCGGGGGCCTTCCCACCCTGGCTCCCCCATCGACGT < 41bp 1 0.524704823219359 1 0.0777926743030548 experiment 0.950590353561282 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021497 chr7:130021492 nonsynonymous SNV 0.117 0 16 hm5C_associated_SNPs_29844 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 22bp
chr7 130021492 130021492 1 + G T LUSC 130021497 + 130021477 130021517 41 TTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGT TTCTGGCGGGGGCCTTCCCACCCTGGCTCCCCCATCGACGT < 41bp 1 0.524704823219359 1 0.0777926743030548 experiment 0.950590353561282 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021497 chr7:130021492 nonsynonymous SNV 0.117 0 16 hm5C_associated_SNPs_29844 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 30bp
chr7 130021492 130021492 1 + G T LUSC 130021498 + 130021478 130021518 41 TCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC TCTGGCGGGGGCCTTCCCACCCTGGCTCCCCCATCGACGTC < 41bp 1 0.646729059615543 1 0.253101170063019 experiment 0.706541880768914 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021498 chr7:130021492 nonsynonymous SNV 0.117 0 15 hm5C_associated_SNPs_29845 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 22bp
chr7 130021492 130021492 1 + G T LUSC 130021498 + 130021478 130021518 41 TCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC TCTGGCGGGGGCCTTCCCACCCTGGCTCCCCCATCGACGTC < 41bp 1 0.646729059615543 1 0.253101170063019 experiment 0.706541880768914 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021498 chr7:130021492 nonsynonymous SNV 0.117 0 15 hm5C_associated_SNPs_29845 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 30bp
chr7 130021492 130021492 1 + G T LUSC 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT CGGGGGCCTTCCCACCCTGGCTCCCCCATCGACGTCCGAGT < 41bp 1 0.194607471686936 1 0.117912411689758 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021492 nonsynonymous SNV 0.117 0 10 hm5C_associated_SNPs_29846 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 22bp
chr7 130021492 130021492 1 + G T LUSC 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT CGGGGGCCTTCCCACCCTGGCTCCCCCATCGACGTCCGAGT < 41bp 1 0.194607471686936 1 0.117912411689758 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021492 nonsynonymous SNV 0.117 0 10 hm5C_associated_SNPs_29846 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 30bp
chr7 130021492 130021492 1 + G T LUSC 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC GGGGCCTTCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC < 41bp 1 0.191385698117965 1 0.0285266935825348 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021492 nonsynonymous SNV 0.117 0 8 hm5C_associated_SNPs_29847 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 22bp
chr7 130021492 130021492 1 + G T LUSC 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC GGGGCCTTCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC < 41bp 1 0.191385698117965 1 0.0285266935825348 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021492 nonsynonymous SNV 0.117 0 8 hm5C_associated_SNPs_29847 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 30bp
chr7 130021492 130021492 1 + G T LUSC 130021506 + 130021486 130021526 41 GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC GGGCCTTCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC < 41bp 1 0.391062507089755 1 0.205927699804306 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021506 chr7:130021492 nonsynonymous SNV 0.117 0 7 hm5C_associated_SNPs_29848 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 22bp
chr7 130021492 130021492 1 + G T LUSC 130021506 + 130021486 130021526 41 GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC GGGCCTTCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC < 41bp 1 0.391062507089755 1 0.205927699804306 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021506 chr7:130021492 nonsynonymous SNV 0.117 0 7 hm5C_associated_SNPs_29848 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 30bp
chr7 130021492 130021492 1 + G T LUSC 130021507 + 130021487 130021527 41 GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC GGCCTTCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC < 41bp 1 0.0902242678380938 1 0.0823304653167725 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021507 chr7:130021492 nonsynonymous SNV 0.117 0 6 hm5C_associated_SNPs_29849 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 22bp
chr7 130021492 130021492 1 + G T LUSC 130021507 + 130021487 130021527 41 GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC GGCCTTCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC < 41bp 1 0.0902242678380938 1 0.0823304653167725 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021507 chr7:130021492 nonsynonymous SNV 0.117 0 6 hm5C_associated_SNPs_29849 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 30bp
chr7 130021492 130021492 1 + G T LUSC 130021508 + 130021488 130021528 41 GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT GCCTTCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT < 41bp 1 0.0432918389204473 1 0.316358089447021 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021508 chr7:130021492 nonsynonymous SNV 0.117 0 5 hm5C_associated_SNPs_29850 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 22bp
chr7 130021492 130021492 1 + G T LUSC 130021508 + 130021488 130021528 41 GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT GCCTTCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT < 41bp 1 0.0432918389204473 1 0.316358089447021 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021508 chr7:130021492 nonsynonymous SNV 0.117 0 5 hm5C_associated_SNPs_29850 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 30bp
chr7 130021492 130021492 1 + G T LUSC 130021509 + 130021489 130021529 41 CCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT CCTTCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT < 41bp 1 0.399939750774825 1 0.203863888978958 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021509 chr7:130021492 nonsynonymous SNV 0.117 0 4 hm5C_associated_SNPs_29851 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 22bp
chr7 130021492 130021492 1 + G T LUSC 130021509 + 130021489 130021529 41 CCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT CCTTCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT < 41bp 1 0.399939750774825 1 0.203863888978958 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021509 chr7:130021492 nonsynonymous SNV 0.117 0 4 hm5C_associated_SNPs_29851 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 30bp
chr22 39824059 39824059 1 + C A LUSC 39824063 + 39824043 39824083 41 TACCCTGTGTCTGTGCCATACTCCAGCGCCCAGAGCACCAG TACCCTGTGTCTGTGCAATACTCCAGCGCCCAGAGCACCAG < 41bp 1 0.799493849938837 1 0.949877500534058 experiment 0.401012300122325 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control TAB1 ENSG00000100324 CDS Human protein_coding chr22:39824063 chr22:39824059 nonsynonymous SNV 0.963 4 17 hm5C_associated_SNPs_29853 0 0 0 0 1 TAB1 chr22:39824026 3'AG 39824026 Downstream 34bp
chr2 233681609 233681609 1 + T C LUSC 233681615 + 233681595 233681635 41 AAGAGAGGCAGAAATGAGGGCAAAACGGGAAGAGGAAGAGC AAGAGAGGCAGAAACGAGGGCAAAACGGGAAGAGGAAGAGC < 41bp 1 0.278251124997087 1 0.345849931240082 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233681615 chr2:233681609 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_29855 0 0 1 0 1 GIGYF2 chr2:233681581 3'AG 233681581 Downstream 29bp
chr2 109400076 109400076 1 + G T LUSC 109400063 + 109400043 109400083 41 TTTTTTCAGGGAGGAGATATCACCAAACATGATGGAACAGG TTTTTTCAGGGAGGAGATATCACCAAACATGATTGAACAGG < 41bp 1 0.648627031531292 1 0.499713212251663 experiment 0.702745936937415 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109400063 chr2:109400076 stopgain 0.997 0 34 hm5C_associated_SNPs_29856 0 0 1 0 1 RANBP2 chr2:109400052 3'AG 109400052 Downstream 25bp
chr19 19035055 19035055 1 + C G LUSC 19035045 + 19035025 19035065 41 CACATCCTTCCCGCCAGGACCTGCCAGATTCTGTGCATGAT CACATCCTTCCCGCCAGGACCTGCCAGATTGTGTGCATGAT < 41bp 1 0.184414267022263 1 0.105171382427216 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DDX49 ENSG00000105671 CDS Human protein_coding chr19:19035045 chr19:19035055 nonsynonymous SNV 0.997 1 31 hm5C_associated_SNPs_29857 0 0 1 2 2 DDX49 chr19:19035042 3'AG 19035042 Downstream 14bp
chr19 19035055 19035055 1 + C G LUSC 19035045 + 19035025 19035065 41 CACATCCTTCCCGCCAGGACCTGCCAGATTCTGTGCATGAT CACATCCTTCCCGCCAGGACCTGCCAGATTGTGTGCATGAT < 41bp 1 0.184414267022263 1 0.105171382427216 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DDX49 ENSG00000105671 CDS Human protein_coding chr19:19035045 chr19:19035055 nonsynonymous SNV 0.997 1 31 hm5C_associated_SNPs_29857 0 0 1 2 2 DDX49 chr19:19035117 5'GT 19035117 Upstream 63bp
chr9 79996916 79996916 1 + G A LUSC 79996920 + 79996900 79996940 41 AGACTTCTGAAGTGGAGAGTCTGCGACCTCCTCGGTTCTTC AGACTTCTGAAGTGGAAAGTCTGCGACCTCCTCGGTTCTTC < 41bp 1 0.468985523725108 1 0.443480342626572 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VPS13A ENSG00000197969 CDS Human protein_coding chr9:79996920 chr9:79996916 synonymous SNV . 0 17 hm5C_associated_SNPs_29859 0 0 1 0 2 VPS13A chr9:79996892 3'AG 79996892 Downstream 25bp
chr9 79996916 79996916 1 + G A LUSC 79996920 + 79996900 79996940 41 AGACTTCTGAAGTGGAGAGTCTGCGACCTCCTCGGTTCTTC AGACTTCTGAAGTGGAAAGTCTGCGACCTCCTCGGTTCTTC < 41bp 1 0.468985523725108 1 0.443480342626572 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VPS13A ENSG00000197969 CDS Human protein_coding chr9:79996920 chr9:79996916 synonymous SNV . 0 17 hm5C_associated_SNPs_29859 0 0 1 0 2 VPS13A chr9:79997003 5'GT 79997003 Upstream 88bp
chr3 183854505 183854505 1 + C T LUSC 183854500 + 183854480 183854520 41 TGTCTTTTGTTGCTGGAAAGCTGCTCAAATCAAAGAACATT TGTCTTTTGTTGCTGGAAAGCTGCTTAAATCAAAGAACATT < 41bp 1 0.411918078834918 1 0.323174476623535 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183854500 chr3:183854505 stopgain 1.000 1 26 hm5C_associated_SNPs_29860 0 0 1 0 1 EIF2B5 chr3:183854524 5'GT 183854524 Upstream 20bp
chrX 153627899 153627899 1 + A T LUSC 153627896 + 153627876 153627916 41 ATGAGTTTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT ATGAGTTTCCGCTTTGTGGCCACTTGGTGTCAGATGAATAT < 41bp 1 0.158508103043697 1 0.180514931678772 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627896 chrX:153627899 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_29861 0 0 1 0 2 RPL10 chrX:153627828 3'AG 153627828 Downstream 72bp
chrX 153627899 153627899 1 + A T LUSC 153627896 + 153627876 153627916 41 ATGAGTTTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT ATGAGTTTCCGCTTTGTGGCCACTTGGTGTCAGATGAATAT < 41bp 1 0.158508103043697 1 0.180514931678772 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627896 chrX:153627899 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_29861 0 0 1 0 2 RPL10 chrX:153627935 5'GT 153627935 Upstream 37bp
chr10 118314711 118314711 1 + G T LUSC 118314708 + 118314688 118314728 41 AGGGTTGGACCCAGCAGAACCTTGCTTTCAGGGCACACCTG AGGGTTGGACCCAGCAGAACCTTTCTTTCAGGGCACACCTG < 41bp 1 0.106960151137159 1 0.142944604158401 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314708 chr10:118314711 nonsynonymous SNV 0.938 1 24 hm5C_associated_SNPs_29862 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 99bp
chr10 118314711 118314711 1 + G T LUSC 118314712 + 118314692 118314732 41 TTGGACCCAGCAGAACCTTGCTTTCAGGGCACACCTGAATT TTGGACCCAGCAGAACCTTTCTTTCAGGGCACACCTGAATT < 41bp 1 0.0582148044618673 1 0.0556910932064056 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314712 chr10:118314711 nonsynonymous SNV 0.938 1 20 hm5C_associated_SNPs_29863 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 99bp
chr10 118314711 118314711 1 + G T LUSC 118314721 + 118314701 118314741 41 GCAGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATT GCAGAACCTTTCTTTCAGGGCACACCTGAATTAGTCCGATT < 41bp 1 0.245168429644023 1 0.0393166840076447 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314721 chr10:118314711 nonsynonymous SNV 0.938 1 11 hm5C_associated_SNPs_29864 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 99bp
chr10 118314711 118314711 1 + G T LUSC 118314723 + 118314703 118314743 41 AGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGG AGAACCTTTCTTTCAGGGCACACCTGAATTAGTCCGATTGG < 41bp 1 0.397500051734456 1 0.0520841777324677 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314723 chr10:118314711 nonsynonymous SNV 0.938 1 9 hm5C_associated_SNPs_29865 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 99bp
chr10 118314711 118314711 1 + G T LUSC 118314725 + 118314705 118314745 41 AACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGAC AACCTTTCTTTCAGGGCACACCTGAATTAGTCCGATTGGAC < 41bp 1 0.207347966055166 1 0.227236419916153 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314725 chr10:118314711 nonsynonymous SNV 0.938 1 7 hm5C_associated_SNPs_29866 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 99bp
chr10 118314711 118314711 1 + G T LUSC 118314726 + 118314706 118314746 41 ACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGACC ACCTTTCTTTCAGGGCACACCTGAATTAGTCCGATTGGACC < 41bp 1 0.685386294327665 1 0.566438674926758 experiment 0.629227411344671 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314726 chr10:118314711 nonsynonymous SNV 0.938 1 6 hm5C_associated_SNPs_29867 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 99bp
chr17 74944109 74944109 1 + C A LUSC 74944107 + 74944087 74944127 41 GCACCGACACCTGCCTGGACCACGGGCTAATCTGTGAGCCC GCACCGACACCTGCCTGGACCAAGGGCTAATCTGTGAGCCC < 41bp 1 0.699105100479481 1 0.86231529712677 experiment 0.601789799041037 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MGAT5B ENSG00000167889 CDS Human protein_coding chr17:74944107 chr17:74944109 nonsynonymous SNV 0.471 2 23 hm5C_associated_SNPs_29869 0 0 1 0 1 MGAT5B chr17:74944168 5'GT 74944168 Upstream 60bp
chr11 123989037 123989037 1 + G C LUSC 123989020 + 123989000 123989040 41 CCAACCTGGGTCGAAGGCGGCAGTCACCCTGAAGTATGTGC CCAACCTGGGTCGAAGGCGGCAGTCACCCTGAAGTATCTGC < 41bp 1 0.164670948026229 1 0.196766078472137 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VWA5A ENSG00000110002 CDS Human protein_coding chr11:123989020 chr11:123989037 nonsynonymous SNV 0.994 4 38 hm5C_associated_SNPs_29871 0 0 0 0 1 VWA5A chr11:123989118 5'GT 123989118 Upstream 82bp
chr20 62368988 62368988 1 + C T LUSC 62368995 + 62368975 62369015 41 TGGGCGCTGTGCACAGCCTGCCGCAGGTAGGTCCCTCAGCC TGGGCGCTGTGCATAGCCTGCCGCAGGTAGGTCCCTCAGCC < 41bp 1 0.548950026652671 1 0.322125434875488 experiment 0.902099946694659 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LIME1 ENSG00000203896 CDS Human protein_coding chr20:62368995 chr20:62368988 nonsynonymous SNV 0.340 2 14 hm5C_associated_SNPs_29873 0 0 1 0 1 LIME1 chr20:62369000 5'GT 62369000 Upstream 13bp
chr1 153742723 153742723 1 + C T LUSC 153742703 + 153742683 153742723 41 TAGACTGGGAGACCTTTGAGCAGTATTGTGCCTGGCAGCTC TAGACTGGGAGACCTTTGAGCAGTATTGTGCCTGGCAGCTT < 41bp 1 0.60873858370441 1 0.329465448856354 experiment 0.782522832591181 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control INTS3 ENSG00000143624 CDS Human protein_coding chr1:153742703 chr1:153742723 synonymous SNV . 0 41 hm5C_associated_SNPs_29874 0 0 1 0 1 INTS3 chr1:153742674 3'AG 153742674 Downstream 50bp
chr19 42814479 42814479 1 + G A LUSC 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATAGCCCTAATCAAGTCCCAGAGCA < 41bp 1 0.254487678226166 1 0.105585157871246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814479 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_29876 0 0 0 4 1 PRR19 chr19:42814423 3'AG 42814423 Downstream 57bp
chr3 170110086 170110086 1 + G A LUSC 170110073 + 170110053 170110093 41 GAACTGAGGCAGAGATTGGACCATGCTGAGGCCGATAGGCA GAACTGAGGCAGAGATTGGACCATGCTGAGGCCAATAGGCA < 41bp 1 0.175865304799244 1 0.111410796642303 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIL ENSG00000136603 CDS Human protein_coding chr3:170110073 chr3:170110086 nonsynonymous SNV 0.503 5 34 hm5C_associated_SNPs_29877 0 0 1 0 1 SKIL chr3:170110047 3'AG 170110047 Downstream 40bp
chr3 170110086 170110086 1 + G A LUSC 170110085 + 170110065 170110105 41 AGATTGGACCATGCTGAGGCCGATAGGCAAGAACTCCAAGA AGATTGGACCATGCTGAGGCCAATAGGCAAGAACTCCAAGA < 41bp 1 0.599381643334196 1 0.0823589563369751 experiment 0.801236713331609 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIL ENSG00000136603 CDS Human protein_coding chr3:170110085 chr3:170110086 nonsynonymous SNV 0.503 5 22 hm5C_associated_SNPs_29878 0 0 1 0 1 SKIL chr3:170110047 3'AG 170110047 Downstream 40bp
chr3 170110086 170110086 1 + G A LUSC 170110100 + 170110080 170110120 41 GAGGCCGATAGGCAAGAACTCCAAGATGAACTCAGACAGGA GAGGCCAATAGGCAAGAACTCCAAGATGAACTCAGACAGGA < 41bp 1 0.500140954010269 1 0.567641377449036 experiment 0.999718091979462 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIL ENSG00000136603 CDS Human protein_coding chr3:170110100 chr3:170110086 nonsynonymous SNV 0.503 5 7 hm5C_associated_SNPs_29879 0 0 1 0 1 SKIL chr3:170110047 3'AG 170110047 Downstream 40bp
chrX 128703353 128703353 1 + G C LUSC 128703368 + 128703348 128703388 41 AGCCTGTTAGCGCCCTCTTCCATATTGGGGTAAACACTTGT AGCCTCTTAGCGCCCTCTTCCATATTGGGGTAAACACTTGT < 41bp 1 0.103401189121465 1 0.248976558446884 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128703368 chrX:128703353 nonsynonymous SNV 1.000 5 6 hm5C_associated_SNPs_29885 0 0 0 0 1 OCRL chrX:128703376 5'GT 128703376 Upstream 24bp
chr9 36204115 36204115 1 + G A LUSC 36204107 + 36204087 36204127 41 AGCAGAGTGGAAAGAAAAGGCAATAAAGGAGCTAGAAGAAT AGCAGAGTGGAAAGAAAAGGCAATAAAGAAGCTAGAAGAAT < 41bp 1 0.41568179035785 1 0.268869787454605 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLTA ENSG00000122705 CDS Human protein_coding chr9:36204107 chr9:36204115 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_29886 0 0 1 0 2 CLTA chr9:36204065 3'AG 36204065 Downstream 51bp
chr9 36204115 36204115 1 + G A LUSC 36204107 + 36204087 36204127 41 AGCAGAGTGGAAAGAAAAGGCAATAAAGGAGCTAGAAGAAT AGCAGAGTGGAAAGAAAAGGCAATAAAGAAGCTAGAAGAAT < 41bp 1 0.41568179035785 1 0.268869787454605 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLTA ENSG00000122705 CDS Human protein_coding chr9:36204107 chr9:36204115 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_29886 0 0 1 0 2 CLTA chr9:36204176 5'GT 36204176 Upstream 62bp
chr9 36204115 36204115 1 + G A LUSC 36204118 + 36204098 36204138 41 AAGAAAAGGCAATAAAGGAGCTAGAAGAATGGTATGCAAGA AAGAAAAGGCAATAAAGAAGCTAGAAGAATGGTATGCAAGA < 41bp 1 0.780866105137008 1 0.514090895652771 experiment 0.438267789725984 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CLTA ENSG00000122705 CDS Human protein_coding chr9:36204118 chr9:36204115 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_29887 0 0 1 0 2 CLTA chr9:36204065 3'AG 36204065 Downstream 51bp
chr9 36204115 36204115 1 + G A LUSC 36204118 + 36204098 36204138 41 AAGAAAAGGCAATAAAGGAGCTAGAAGAATGGTATGCAAGA AAGAAAAGGCAATAAAGAAGCTAGAAGAATGGTATGCAAGA < 41bp 1 0.780866105137008 1 0.514090895652771 experiment 0.438267789725984 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CLTA ENSG00000122705 CDS Human protein_coding chr9:36204118 chr9:36204115 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_29887 0 0 1 0 2 CLTA chr9:36204176 5'GT 36204176 Upstream 62bp
chr1 145581255 145581255 1 + G T LUSC 145581253 + 145581233 145581273 41 TCCGGGTGTCACTCATGTGCCCGGTGGGTAAAAGGGGAGAA TCCGGGTGTCACTCATGTGCCCTGTGGGTAAAAGGGGAGAA < 41bp 1 0.0783392110161469 1 0.122816771268845 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PIAS3 ENSG00000131788 CDS Human protein_coding chr1:145581253 chr1:145581255 synonymous SNV . 0 23 hm5C_associated_SNPs_29890 0 0 0 0 2 PIAS3 chr1:145581182 3'AG 145581182 Downstream 74bp
chr1 145581255 145581255 1 + G T LUSC 145581253 + 145581233 145581273 41 TCCGGGTGTCACTCATGTGCCCGGTGGGTAAAAGGGGAGAA TCCGGGTGTCACTCATGTGCCCTGTGGGTAAAAGGGGAGAA < 41bp 1 0.0783392110161469 1 0.122816771268845 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PIAS3 ENSG00000131788 CDS Human protein_coding chr1:145581253 chr1:145581255 synonymous SNV . 0 23 hm5C_associated_SNPs_29890 0 0 0 0 2 PIAS3 chr1:145581255 5'GT 145581255 Upstream 1bp
chr19 41040049 41040049 1 + C T LUSC 41040069 + 41040049 41040089 41 CGAGATCCGCCAGTGCTGGGCGGAGCTGGAGAGCACCACCC TGAGATCCGCCAGTGCTGGGCGGAGCTGGAGAGCACCACCC < 41bp 1 0.490555705645201 1 0.790152192115784 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41040069 chr19:41040049 synonymous SNV . 0 1 hm5C_associated_SNPs_29891 0 0 0 0 1 SPTBN4 chr19:41039987 3'AG 41039987 Downstream 63bp
chr2 96686964 96686964 1 + G A LUSC 96686979 + 96686959 96686999 41 GACCTGATAGCCTGGGTGTCCCAGTGAGTGACAGGGGCTAT GACCTAATAGCCTGGGTGTCCCAGTGAGTGACAGGGGCTAT < 41bp 1 0.367845296749491 1 0.345578253269196 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAHD2CP ENSG00000231584 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:96686979 chr2:96686964 . . 0 6 hm5C_associated_SNPs_29892 0 0 0 0 2 FAHD2CP chr2:96686873 3'AG 96686873 Downstream 92bp
chr2 96686964 96686964 1 + G A LUSC 96686979 + 96686959 96686999 41 GACCTGATAGCCTGGGTGTCCCAGTGAGTGACAGGGGCTAT GACCTAATAGCCTGGGTGTCCCAGTGAGTGACAGGGGCTAT < 41bp 1 0.367845296749491 1 0.345578253269196 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAHD2CP ENSG00000231584 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:96686979 chr2:96686964 . . 0 6 hm5C_associated_SNPs_29892 0 0 0 0 2 FAHD2CP chr2:96686981 5'GT 96686981 Upstream 18bp
chr19 56925413 56925413 1 + G A LUSC 56925395 + 56925375 56925415 41 ATGGGAATGGCTGAACCCTGCTCAGAGGAATTTGTACAGGA ATGGGAATGGCTGAACCCTGCTCAGAGGAATTTGTACAAGA < 41bp 1 0.642050731410667 1 0.0735331177711487 experiment 0.715898537178665 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF583 ENSG00000198440 CDS Human protein_coding chr19:56925395 chr19:56925413 nonsynonymous SNV 0.048 0 39 hm5C_associated_SNPs_29896 0 0 0 0 2 ZNF583 chr19:56925328 3'AG 56925328 Downstream 86bp
chr19 56925413 56925413 1 + G A LUSC 56925395 + 56925375 56925415 41 ATGGGAATGGCTGAACCCTGCTCAGAGGAATTTGTACAGGA ATGGGAATGGCTGAACCCTGCTCAGAGGAATTTGTACAAGA < 41bp 1 0.642050731410667 1 0.0735331177711487 experiment 0.715898537178665 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF583 ENSG00000198440 CDS Human protein_coding chr19:56925395 chr19:56925413 nonsynonymous SNV 0.048 0 39 hm5C_associated_SNPs_29896 0 0 0 0 2 ZNF583 chr19:56925454 5'GT 56925454 Upstream 42bp
chr19 54711357 54711357 1 + G T LUSC 54711362 + 54711342 54711382 41 CGCTCTCCCTACGGGGGTGGCCGCCCGGGCCGCGTGAAGAG CGCTCTCCCTACGGGTGTGGCCGCCCGGGCCGCGTGAAGAG < 41bp 1 0.342223143814169 1 0.141463369131088 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS9 ENSG00000170889 CDS Human protein_coding chr19:54711362 chr19:54711357 nonsynonymous SNV 0.121 2 16 hm5C_associated_SNPs_29897 0 0 1 0 1 RPS9 chr19:54711266 3'AG 54711266 Downstream 92bp
chr19 54711357 54711357 1 + G T LUSC 54711363 + 54711343 54711383 41 GCTCTCCCTACGGGGGTGGCCGCCCGGGCCGCGTGAAGAGG GCTCTCCCTACGGGTGTGGCCGCCCGGGCCGCGTGAAGAGG < 41bp 1 0.575569392982085 1 0.43853434920311 experiment 0.84886121403583 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS9 ENSG00000170889 CDS Human protein_coding chr19:54711363 chr19:54711357 nonsynonymous SNV 0.121 2 15 hm5C_associated_SNPs_29898 0 0 1 0 1 RPS9 chr19:54711266 3'AG 54711266 Downstream 92bp
chr6 35436793 35436793 1 + G T LUSC 35436813 + 35436793 35436833 41 GGGCACCGTCAGGTTGGCACCGTTCTGATCCCACCCAGCCC TGGCACCGTCAGGTTGGCACCGTTCTGATCCCACCCAGCCC < 41bp 1 0.154831041454596 1 0.118504345417023 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL10A ENSG00000198755 CDS Human protein_coding chr6:35436813 chr6:35436793 synonymous SNV . 0 1 hm5C_associated_SNPs_29899 0 0 1 0 2 RPL10A chr6:35436724 3'AG 35436724 Downstream 70bp
chr6 35436793 35436793 1 + G T LUSC 35436813 + 35436793 35436833 41 GGGCACCGTCAGGTTGGCACCGTTCTGATCCCACCCAGCCC TGGCACCGTCAGGTTGGCACCGTTCTGATCCCACCCAGCCC < 41bp 1 0.154831041454596 1 0.118504345417023 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL10A ENSG00000198755 CDS Human protein_coding chr6:35436813 chr6:35436793 synonymous SNV . 0 1 hm5C_associated_SNPs_29899 0 0 1 0 2 RPL10A chr6:35436804 5'GT 35436804 Upstream 12bp
chr4 184129113 184129113 1 + G T LUSC 184129110 + 184129090 184129130 41 CACCTAATGTTTTCAGAAACCACGCAGATAGAAGATCCAAG CACCTAATGTTTTCAGAAACCACTCAGATAGAAGATCCAAG < 41bp 1 0.0661250894115425 1 0.127796471118927 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WWC2 ENSG00000151718 CDS Human protein_coding chr4:184129110 chr4:184129113 synonymous SNV . 0 24 hm5C_associated_SNPs_29900 0 0 1 0 1 WWC2 chr4:184129106 3'AG 184129106 Downstream 8bp
chr4 184129113 184129113 1 + G T LUSC 184129126 + 184129106 184129146 41 AAACCACGCAGATAGAAGATCCAAGAAAACAATGGAGGGGG AAACCACTCAGATAGAAGATCCAAGAAAACAATGGAGGGGG < 41bp 1 0.110119844830344 1 0.371095776557922 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WWC2 ENSG00000151718 CDS Human protein_coding chr4:184129126 chr4:184129113 synonymous SNV . 0 8 hm5C_associated_SNPs_29901 0 0 1 0 1 WWC2 chr4:184129106 3'AG 184129106 Downstream 8bp
chr8 48874091 48874091 1 + C A LUSC 48874104 + 48874084 48874124 41 GAGGATGCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA GAGGATGACAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA < 41bp 1 0.17647431861161 1 0.0679217278957367 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874104 chr8:48874091 nonsynonymous SNV 0.141 0 8 hm5C_associated_SNPs_29910 0 0 1 1 1 MCM4 chr8:48874076 3'AG 48874076 Downstream 16bp
chr3 12422963 12422963 1 + T C LUSC 12422970 + 12422950 12422990 41 CTGGATTTCACTATGGAGTTCATGCTTGTGAAGGATGCAAG CTGGATTTCACTACGGAGTTCATGCTTGTGAAGGATGCAAG < 41bp 1 0.109508023842278 1 0.0534103214740753 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPARG ENSG00000132170 CDS Human protein_coding chr3:12422970 chr3:12422963 synonymous SNV . 0 14 hm5C_associated_SNPs_29911 0 0 1 0 1 PPARG chr3:12422990 5'GT 12422990 Upstream 28bp
chr8 121259927 121259927 1 + C A LUSC 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTACGTGGGACCCCCAATCTTCCCCGGTGAAAGGCTATA < 41bp 1 0.105152161410939 1 0.163827985525131 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259927 nonsynonymous SNV 0.058 4 18 hm5C_associated_SNPs_29913 0 0 0 0 2 COL14A1 chr8:121259852 3'AG 121259852 Downstream 76bp
chr8 121259927 121259927 1 + C A LUSC 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTACGTGGGACCCCCAATCTTCCCCGGTGAAAGGCTATA < 41bp 1 0.105152161410939 1 0.163827985525131 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259927 nonsynonymous SNV 0.058 4 18 hm5C_associated_SNPs_29913 0 0 0 0 2 COL14A1 chr8:121259974 5'GT 121259974 Upstream 48bp
chr8 121259927 121259927 1 + C A LUSC 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGACCCCCAATCTTCCCCGGTGAAAGGCTATAGAAT < 41bp 1 0.363247325791575 1 0.0855082273483276 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259927 nonsynonymous SNV 0.058 4 14 hm5C_associated_SNPs_29914 0 0 0 0 2 COL14A1 chr8:121259852 3'AG 121259852 Downstream 76bp
chr8 121259927 121259927 1 + C A LUSC 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGACCCCCAATCTTCCCCGGTGAAAGGCTATAGAAT < 41bp 1 0.363247325791575 1 0.0855082273483276 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259927 nonsynonymous SNV 0.058 4 14 hm5C_associated_SNPs_29914 0 0 0 0 2 COL14A1 chr8:121259974 5'GT 121259974 Upstream 48bp
chr4 144460047 144460047 1 + T A LUSC 144460033 + 144460013 144460053 41 TGGCATCAATCTTGCGACTGCTGATGTAGTAATTTTGTATG TGGCATCAATCTTGCGACTGCTGATGTAGTAATTATGTATG < 41bp 1 0.245763934501489 1 0.297051608562469 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA5 ENSG00000153147 CDS Human protein_coding chr4:144460033 chr4:144460047 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_29915 0 0 1 0 1 SMARCA5 chr4:144460091 5'GT 144460091 Upstream 45bp
chr16 8735029 8735029 1 + G A LUSC 8735032 + 8735012 8735052 41 TGGACTGGCTGAAGGACGACCTCTGCACAGGTGTGTGTTTC TGGACTGGCTGAAGGACAACCTCTGCACAGGTGTGTGTTTC < 41bp 1 0.296019563947509 1 0.460259109735489 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control METTL22 ENSG00000067365 CDS Human protein_coding chr16:8735032 chr16:8735029 nonsynonymous SNV 0.974 0 18 hm5C_associated_SNPs_29917 0 0 1 0 2 METTL22 chr16:8734988 3'AG 8734988 Downstream 42bp
chr16 8735029 8735029 1 + G A LUSC 8735032 + 8735012 8735052 41 TGGACTGGCTGAAGGACGACCTCTGCACAGGTGTGTGTTTC TGGACTGGCTGAAGGACAACCTCTGCACAGGTGTGTGTTTC < 41bp 1 0.296019563947509 1 0.460259109735489 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control METTL22 ENSG00000067365 CDS Human protein_coding chr16:8735032 chr16:8735029 nonsynonymous SNV 0.974 0 18 hm5C_associated_SNPs_29917 0 0 1 0 2 METTL22 chr16:8735041 5'GT 8735041 Upstream 13bp
chr10 70525822 70525822 1 + G C LUSC 70525803 + 70525783 70525823 41 TTGAGTGTCCTATTGGACTACAGATTAGAGGATAATAAAGA TTGAGTGTCCTATTGGACTACAGATTAGAGGATAATAAACA < 41bp 1 0.230450859431968 1 0.31879734992981 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70525803 chr10:70525822 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_29920 0 0 1 0 1 CCAR1 chr10:70525836 5'GT 70525836 Upstream 15bp
chr5 176001165 176001165 1 + A G LUSC 176001161 + 176001141 176001181 41 TCTGCAGGCATGGTCGTGTACTCCATAGAGAAGGTGAGTGT TCTGCAGGCATGGTCGTGTACTCCGTAGAGAAGGTGAGTGT < 41bp 1 0.688794718130673 1 0.345861375331879 experiment 0.622410563738654 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176001161 chr5:176001165 nonsynonymous SNV 0.806 1 25 hm5C_associated_SNPs_29921 0 0 1 0 2 CDHR2 chr5:176001084 3'AG 176001084 Downstream 82bp
chr5 176001165 176001165 1 + A G LUSC 176001161 + 176001141 176001181 41 TCTGCAGGCATGGTCGTGTACTCCATAGAGAAGGTGAGTGT TCTGCAGGCATGGTCGTGTACTCCGTAGAGAAGGTGAGTGT < 41bp 1 0.688794718130673 1 0.345861375331879 experiment 0.622410563738654 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176001161 chr5:176001165 nonsynonymous SNV 0.806 1 25 hm5C_associated_SNPs_29921 0 0 1 0 2 CDHR2 chr5:176001173 5'GT 176001173 Upstream 9bp
chr16 71956497 71956497 1 + G C LUSC 71956504 + 71956484 71956524 41 AGTTGGTGGACCTGATGGAACGGTGCCAATGCCCATGCCCA AGTTGGTGGACCTCATGGAACGGTGCCAATGCCCATGCCCA < 41bp 1 0.646629558301732 1 0.306204438209534 experiment 0.706740883396535 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IST1 ENSG00000182149 CDS Human protein_coding chr16:71956504 chr16:71956497 nonsynonymous SNV 0.997 2 14 hm5C_associated_SNPs_29929 0 0 1 2 1 IST1 chr16:71956583 5'GT 71956583 Upstream 87bp
chr1 228495998 228495998 1 + G T LUSC 228496008 + 228495988 228496028 41 CACACCCTGCGGCTGAAGGGCGTGACGCCCGAGGACGCTGG CACACCCTGCTGCTGAAGGGCGTGACGCCCGAGGACGCTGG < 41bp 1 0.101494921957464 1 0.580971419811249 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496008 chr1:228495998 nonsynonymous SNV 0.002 1 11 hm5C_associated_SNPs_29930 0 0 0 0 1 OBSCN chr1:228496084 5'GT 228496084 Upstream 87bp
chr1 228495998 228495998 1 + G T LUSC 228496015 + 228495995 228496035 41 TGCGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTC TGCTGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTC < 41bp 1 0.166714699592212 1 0.658774256706238 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496015 chr1:228495998 nonsynonymous SNV 0.002 1 4 hm5C_associated_SNPs_29931 0 0 0 0 1 OBSCN chr1:228496084 5'GT 228496084 Upstream 87bp
chr1 228495998 228495998 1 + G T LUSC 228496016 + 228495996 228496036 41 GCGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCT GCTGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCT < 41bp 1 0.0806517148395592 1 0.508933365345001 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496016 chr1:228495998 nonsynonymous SNV 0.002 1 3 hm5C_associated_SNPs_29932 0 0 0 0 1 OBSCN chr1:228496084 5'GT 228496084 Upstream 87bp
chr1 228495998 228495998 1 + G T LUSC 228496017 + 228495997 228496037 41 CGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCTC CTGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCTC < 41bp 1 0.220708285955288 1 0.891510546207428 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496017 chr1:228495998 nonsynonymous SNV 0.002 1 2 hm5C_associated_SNPs_29933 0 0 0 0 1 OBSCN chr1:228496084 5'GT 228496084 Upstream 87bp
chr15 22962537 22962537 1 + A T LUSC 22962534 + 22962514 22962554 41 GCTACGAGACGCTGCTGAAGCAGAGGCATGTGCAGGTGAGC GCTACGAGACGCTGCTGAAGCAGTGGCATGTGCAGGTGAGC < 41bp 1 0.550700649847753 1 0.698631525039673 experiment 0.898598700304495 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22962534 chr15:22962537 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_29934 0 0 1 0 2 CYFIP1 chr15:22962440 3'AG 22962440 Downstream 98bp
chr15 22962537 22962537 1 + A T LUSC 22962534 + 22962514 22962554 41 GCTACGAGACGCTGCTGAAGCAGAGGCATGTGCAGGTGAGC GCTACGAGACGCTGCTGAAGCAGTGGCATGTGCAGGTGAGC < 41bp 1 0.550700649847753 1 0.698631525039673 experiment 0.898598700304495 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22962534 chr15:22962537 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_29934 0 0 1 0 2 CYFIP1 chr15:22962548 5'GT 22962548 Upstream 12bp
chr3 58112437 58112437 1 + C T LUSC 58112439 + 58112419 58112459 41 TGCTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTA TGCTGAGTACATTCCTTTTGCACCGGGGGATTACGATGTTA < 41bp 1 0.442523537051282 1 0.0712225139141083 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112439 chr3:58112437 synonymous SNV . 0 19 hm5C_associated_SNPs_29943 0 0 1 0 1 FLNB chr3:58112489 5'GT 58112489 Upstream 53bp
chr3 58112437 58112437 1 + C T LUSC 58112441 + 58112421 58112461 41 CTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAAT CTGAGTACATTCCTTTTGCACCGGGGGATTACGATGTTAAT < 41bp 1 0.233636701249553 1 0.306386470794678 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112441 chr3:58112437 synonymous SNV . 0 17 hm5C_associated_SNPs_29944 0 0 1 0 1 FLNB chr3:58112489 5'GT 58112489 Upstream 53bp
chr3 58112437 58112437 1 + C T LUSC 58112442 + 58112422 58112462 41 TGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAATA TGAGTACATTCCTTTTGCACCGGGGGATTACGATGTTAATA < 41bp 1 0.462730466652556 1 0.869012236595154 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112442 chr3:58112437 synonymous SNV . 0 16 hm5C_associated_SNPs_29945 0 0 1 0 1 FLNB chr3:58112489 5'GT 58112489 Upstream 53bp
chr19 36370332 36370332 1 + G C LUSC 36370340 + 36370320 36370360 41 CGCTTCCTGGAGGAACGACCCTGACCCGGCCCCCTTCACCC CGCTTCCTGGAGCAACGACCCTGACCCGGCCCCCTTCACCC < 41bp 1 0.38706149005108 1 0.182875156402588 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APLP1 ENSG00000105290 CDS Human protein_coding chr19:36370340 chr19:36370332 nonsynonymous SNV 0.998 1 13 hm5C_associated_SNPs_29949 0 0 1 0 1 APLP1 chr19:36370245 3'AG 36370245 Downstream 88bp
chr14 60591903 60591903 1 + G C LUSC 60591886 + 60591866 60591906 41 GGTCATATATTGAGAGTTTACGGTGGTGTTTTGCCTTGGTC GGTCATATATTGAGAGTTTACGGTGGTGTTTTGCCTTCGTC < 41bp 1 0.772256910643184 1 0.698272466659546 experiment 0.455486178713632 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60591886 chr14:60591903 nonsynonymous SNV 0.996 4 38 hm5C_associated_SNPs_29950 0 0 1 0 1 PCNX4 chr14:60591969 5'GT 60591969 Upstream 67bp
chr12 109604776 109604776 1 + G T LUSC 109604784 + 109604764 109604804 41 TCACACGCTTTGGGGGGGATCGGGTCATCGAGAAGGTACAG TCACACGCTTTGTGGGGGATCGGGTCATCGAGAAGGTACAG < 41bp 1 0.470607515787964 1 0.689505398273468 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109604784 chr12:109604776 nonsynonymous SNV 0.942 3 13 hm5C_associated_SNPs_29951 0 0 1 0 1 ACACB chr12:109604798 5'GT 109604798 Upstream 23bp
chr2 70122270 70122270 1 + C T LUSC 70122272 + 70122252 70122292 41 CGGGAGAGAGAACGCAGGCGCCGAGAAAGGTCCAGGTCTCG CGGGAGAGAGAACGCAGGTGCCGAGAAAGGTCCAGGTCTCG < 41bp 1 0.762951745582457 1 0.482309073209763 experiment 0.474096508835086 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70122272 chr2:70122270 nonsynonymous SNV 0.987 4 19 hm5C_associated_SNPs_29952 0 0 1 0 2 SNRNP27 chr2:70122226 3'AG 70122226 Downstream 45bp
chr2 70122270 70122270 1 + C T LUSC 70122272 + 70122252 70122292 41 CGGGAGAGAGAACGCAGGCGCCGAGAAAGGTCCAGGTCTCG CGGGAGAGAGAACGCAGGTGCCGAGAAAGGTCCAGGTCTCG < 41bp 1 0.762951745582457 1 0.482309073209763 experiment 0.474096508835086 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70122272 chr2:70122270 nonsynonymous SNV 0.987 4 19 hm5C_associated_SNPs_29952 0 0 1 0 2 SNRNP27 chr2:70122346 5'GT 70122346 Upstream 77bp
chr2 171818196 171818196 1 + C T LUSC 171818210 + 171818190 171818230 41 TTATTGCCACCACAAGTAAACCAGTCCCTCACTTCTGTGCC TTATTGTCACCACAAGTAAACCAGTCCCTCACTTCTGTGCC < 41bp 1 0.209315311069197 1 0.0920523405075073 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171818210 chr2:171818196 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_29953 0 0 1 0 2 GORASP2 chr2:171818173 3'AG 171818173 Downstream 24bp
chr2 171818196 171818196 1 + C T LUSC 171818210 + 171818190 171818230 41 TTATTGCCACCACAAGTAAACCAGTCCCTCACTTCTGTGCC TTATTGTCACCACAAGTAAACCAGTCCCTCACTTCTGTGCC < 41bp 1 0.209315311069197 1 0.0920523405075073 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171818210 chr2:171818196 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_29953 0 0 1 0 2 GORASP2 chr2:171818259 5'GT 171818259 Upstream 64bp
chr10 129231606 129231606 1 + G A LUSC 129231605 + 129231585 129231625 41 GTCCATGGTGCGGTCCTTCACGATGCCTTCCTCATCCCGCC GTCCATGGTGCGGTCCTTCACAATGCCTTCCTCATCCCGCC < 41bp 1 0.525072633107636 1 0.354468584060669 experiment 0.949854733784728 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129231605 chr10:129231606 synonymous SNV . 0 22 hm5C_associated_SNPs_29965 0 0 0 0 2 DOCK1 chr10:129231547 3'AG 129231547 Downstream 60bp
chr10 129231606 129231606 1 + G A LUSC 129231605 + 129231585 129231625 41 GTCCATGGTGCGGTCCTTCACGATGCCTTCCTCATCCCGCC GTCCATGGTGCGGTCCTTCACAATGCCTTCCTCATCCCGCC < 41bp 1 0.525072633107636 1 0.354468584060669 experiment 0.949854733784728 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129231605 chr10:129231606 synonymous SNV . 0 22 hm5C_associated_SNPs_29965 0 0 0 0 2 DOCK1 chr10:129231692 5'GT 129231692 Upstream 87bp
chr15 36989588 36989588 1 + C A LUSC 36989578 + 36989558 36989598 41 GACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTA GACTTGCTTCTAGAGAAAAACCTGTCCTTCATAGGTAAGTA < 41bp 1 0.11578866861956 1 0.0815106332302094 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989578 chr15:36989588 nonsynonymous SNV 0.994 1 31 hm5C_associated_SNPs_29968 0 0 1 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 65bp
chr15 36989588 36989588 1 + C A LUSC 36989578 + 36989558 36989598 41 GACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTA GACTTGCTTCTAGAGAAAAACCTGTCCTTCATAGGTAAGTA < 41bp 1 0.11578866861956 1 0.0815106332302094 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989578 chr15:36989588 nonsynonymous SNV 0.994 1 31 hm5C_associated_SNPs_29968 0 0 1 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 4bp
chr15 36989588 36989588 1 + C A LUSC 36989579 + 36989559 36989599 41 ACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTAT ACTTGCTTCTAGAGAAAAACCTGTCCTTCATAGGTAAGTAT < 41bp 1 0.218320903312684 1 0.0462746620178223 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989579 chr15:36989588 nonsynonymous SNV 0.994 1 30 hm5C_associated_SNPs_29969 0 0 1 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 65bp
chr15 36989588 36989588 1 + C A LUSC 36989579 + 36989559 36989599 41 ACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTAT ACTTGCTTCTAGAGAAAAACCTGTCCTTCATAGGTAAGTAT < 41bp 1 0.218320903312684 1 0.0462746620178223 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989579 chr15:36989588 nonsynonymous SNV 0.994 1 30 hm5C_associated_SNPs_29969 0 0 1 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 4bp
chr15 36989588 36989588 1 + C A LUSC 36989584 + 36989564 36989604 41 CTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTC CTTCTAGAGAAAAACCTGTCCTTCATAGGTAAGTATTATTC < 41bp 1 0.439058818021973 1 0.454440534114838 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989584 chr15:36989588 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_29970 0 0 1 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 65bp
chr15 36989588 36989588 1 + C A LUSC 36989584 + 36989564 36989604 41 CTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTC CTTCTAGAGAAAAACCTGTCCTTCATAGGTAAGTATTATTC < 41bp 1 0.439058818021973 1 0.454440534114838 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989584 chr15:36989588 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_29970 0 0 1 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 4bp
chr15 36989588 36989588 1 + C A LUSC 36989587 + 36989567 36989607 41 CTAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTCACA CTAGAGAAAAACCTGTCCTTCATAGGTAAGTATTATTCACA < 41bp 1 0.238090786155318 1 0.103141605854034 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989587 chr15:36989588 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_29971 0 0 1 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 65bp
chr15 36989588 36989588 1 + C A LUSC 36989587 + 36989567 36989607 41 CTAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTCACA CTAGAGAAAAACCTGTCCTTCATAGGTAAGTATTATTCACA < 41bp 1 0.238090786155318 1 0.103141605854034 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989587 chr15:36989588 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_29971 0 0 1 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 4bp
chr1 44446880 44446880 1 + G A LUSC 44446876 + 44446856 44446896 41 GCTGGAGCGCGTCTGCAAGGCTGTGCTCCTTCTCTGCCTGC GCTGGAGCGCGTCTGCAAGGCTGTACTCCTTCTCTGCCTGC < 41bp 1 0.679042749286943 1 0.119991481304169 experiment 0.641914501426115 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control B4GALT2 ENSG00000117411 CDS Human protein_coding chr1:44446876 chr1:44446880 synonymous SNV . 0 25 hm5C_associated_SNPs_29972 0 0 1 0 1 B4GALT2 chr1:44446781 3'AG 44446781 Downstream 100bp
chr16 70170101 70170101 1 + T A LUSC 70170114 + 70170094 70170134 41 CAGAGCCTCTGTTGAGTTCCCTTCTGAGGAGGATGCCAGAA CAGAGCCACTGTTGAGTTCCCTTCTGAGGAGGATGCCAGAA < 41bp 1 0.128365852235769 1 0.066288024187088 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70170114 chr16:70170101 synonymous SNV . 0 8 hm5C_associated_SNPs_29974 0 0 0 0 1 PDPR chr16:70170097 3'AG 70170097 Downstream 5bp
chr20 44571753 44571753 1 + G T LUSC 44571747 + 44571727 44571767 41 GTCCTGCAGGCATTGAGCCTCCACGGGAGTCTTTCAACCGC GTCCTGCAGGCATTGAGCCTCCACGGTAGTCTTTCAACCGC < 41bp 1 0.417867379519939 1 0.55424177646637 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44571747 chr20:44571753 stopgain 0.920 1 27 hm5C_associated_SNPs_29975 0 0 1 0 1 PCIF1 chr20:44571736 3'AG 44571736 Downstream 18bp
chr7 100867103 100867103 1 + G T LUSC 100867120 + 100867100 100867140 41 TCTGGGGACCCACCAGGAGACCAGGTGAGCATGAGACCTGC TCTTGGGACCCACCAGGAGACCAGGTGAGCATGAGACCTGC < 41bp 1 0.673325306459883 1 0.641318142414093 experiment 0.653349387080234 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100867120 chr7:100867103 synonymous SNV . 0 4 hm5C_associated_SNPs_29976 0 0 1 0 1 ZNHIT1 chr7:100867123 5'GT 100867123 Upstream 21bp
chr7 100867103 100867103 1 + G T LUSC 100867121 + 100867101 100867141 41 CTGGGGACCCACCAGGAGACCAGGTGAGCATGAGACCTGCT CTTGGGACCCACCAGGAGACCAGGTGAGCATGAGACCTGCT < 41bp 1 0.744097809778629 1 0.403328537940979 experiment 0.511804380442742 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100867121 chr7:100867103 synonymous SNV . 0 3 hm5C_associated_SNPs_29977 0 0 1 0 1 ZNHIT1 chr7:100867123 5'GT 100867123 Upstream 21bp
chr12 125612718 125612718 1 + A G LUSC 125612714 + 125612694 125612734 41 CCATTGCTTGCAGGAGGCACCGACATCATCTCCTGCTTCAT CCATTGCTTGCAGGAGGCACCGACGTCATCTCCTGCTTCAT < 41bp 1 0.271232298492229 1 0.240666210651398 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AACS ENSG00000081760 CDS Human protein_coding chr12:125612714 chr12:125612718 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_29978 0 0 1 0 1 AACS chr12:125612707 3'AG 125612707 Downstream 12bp
chr13 111111180 111111180 1 + C A LUSC 111111171 + 111111151 111111191 41 ACGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAG ACGAAGCTATCAAAGGTCTTCCGGGACTGACAGGACCCAAG < 41bp 1 0.280299006615926 1 0.758420944213867 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111171 chr13:111111180 nonsynonymous SNV 0.840 4 30 hm5C_associated_SNPs_29979 0 0 1 0 1 COL4A2 chr13:111111118 3'AG 111111118 Downstream 63bp
chr13 111111180 111111180 1 + C A LUSC 111111172 + 111111152 111111192 41 CGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAGG CGAAGCTATCAAAGGTCTTCCGGGACTGACAGGACCCAAGG < 41bp 1 0.705803351945693 1 0.896597743034363 experiment 0.588393296108615 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111172 chr13:111111180 nonsynonymous SNV 0.840 4 29 hm5C_associated_SNPs_29980 0 0 1 0 1 COL4A2 chr13:111111118 3'AG 111111118 Downstream 63bp
chr10 45486418 45486418 1 + C T LUSC 45486398 + 45486378 45486418 41 AACCACCTTCTTTTTCAGAGCGGACAAAATTAAAAGACTGC AACCACCTTCTTTTTCAGAGCGGACAAAATTAAAAGACTGT < 41bp 1 0.0561417519764495 1 0.275027960538864 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45486398 chr10:45486418 synonymous SNV . 0 41 hm5C_associated_SNPs_29983 0 0 1 0 2 RASSF4 chr10:45486396 3'AG 45486396 Downstream 23bp
chr10 45486418 45486418 1 + C T LUSC 45486398 + 45486378 45486418 41 AACCACCTTCTTTTTCAGAGCGGACAAAATTAAAAGACTGC AACCACCTTCTTTTTCAGAGCGGACAAAATTAAAAGACTGT < 41bp 1 0.0561417519764495 1 0.275027960538864 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45486398 chr10:45486418 synonymous SNV . 0 41 hm5C_associated_SNPs_29983 0 0 1 0 2 RASSF4 chr10:45486517 5'GT 45486517 Upstream 100bp
chr7 94917904 94917904 1 + G T LUSC 94917917 + 94917897 94917937 41 CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA CCGTTCATGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA < 41bp 1 0.545384492530848 1 0.179074734449387 experiment 0.909231014938305 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917917 chr7:94917904 nonsynonymous SNV 0.281 0 8 hm5C_associated_SNPs_29984 0 0 1 0 1 PPP1R9A chr7:94917848 3'AG 94917848 Downstream 57bp
chr5 6651984 6651984 1 + G C LUSC 6651967 + 6651947 6651987 41 TTCCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGGAGG TTCCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGCAGG < 41bp 1 0.247099087464026 1 0.137109309434891 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6651967 chr5:6651984 nonsynonymous SNV 0.862 1 38 hm5C_associated_SNPs_29985 0 0 1 2 1 SRD5A1 chr5:6651955 3'AG 6651955 Downstream 30bp
chr5 6651984 6651984 1 + G C LUSC 6651968 + 6651948 6651988 41 TCCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGGAGGA TCCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGCAGGA < 41bp 1 0.0458020601177971 1 0.293656826019287 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6651968 chr5:6651984 nonsynonymous SNV 0.862 1 37 hm5C_associated_SNPs_29986 0 0 1 2 1 SRD5A1 chr5:6651955 3'AG 6651955 Downstream 30bp
chr5 6651984 6651984 1 + G C LUSC 6651969 + 6651949 6651989 41 CCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGGAGGAA CCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGCAGGAA < 41bp 1 0.0644733303902616 1 0.145225822925568 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6651969 chr5:6651984 nonsynonymous SNV 0.862 1 36 hm5C_associated_SNPs_29987 0 0 1 2 1 SRD5A1 chr5:6651955 3'AG 6651955 Downstream 30bp
chr9 136216887 136216887 1 + G C LUSC 136216873 + 136216853 136216893 41 AAGGCTGCTGGCAAAGGGGACGTCCCAACGAAGAGACCACC AAGGCTGCTGGCAAAGGGGACGTCCCAACGAAGACACCACC < 41bp 1 0.128454258638051 1 0.333891749382019 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216873 chr9:136216887 nonsynonymous SNV 0.896 2 35 hm5C_associated_SNPs_29993 0 0 1 0 1 RPL7A chr9:136216907 5'GT 136216907 Upstream 21bp
chr9 136216887 136216887 1 + G C LUSC 136216877 + 136216857 136216897 41 CTGCTGGCAAAGGGGACGTCCCAACGAAGAGACCACCTGTC CTGCTGGCAAAGGGGACGTCCCAACGAAGACACCACCTGTC < 41bp 1 0.175638395081607 1 0.14045512676239 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216877 chr9:136216887 nonsynonymous SNV 0.896 2 31 hm5C_associated_SNPs_29994 0 0 1 0 1 RPL7A chr9:136216907 5'GT 136216907 Upstream 21bp
chr9 136216887 136216887 1 + G C LUSC 136216881 + 136216861 136216901 41 TGGCAAAGGGGACGTCCCAACGAAGAGACCACCTGTCCTTC TGGCAAAGGGGACGTCCCAACGAAGACACCACCTGTCCTTC < 41bp 1 0.789957479989185 1 0.826359450817108 experiment 0.42008504002163 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216881 chr9:136216887 nonsynonymous SNV 0.896 2 27 hm5C_associated_SNPs_29995 0 0 1 0 1 RPL7A chr9:136216907 5'GT 136216907 Upstream 21bp
chr18 74631815 74631815 1 + G T LUSC 74631822 + 74631802 74631842 41 CACTTTCACGGAGGAGGAGACAGCCCAGTTAGCCAAGATCC CACTTTCACGGAGTAGGAGACAGCCCAGTTAGCCAAGATCC < 41bp 1 0.306732561463856 1 0.372455537319183 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74631822 chr18:74631815 stopgain 0.998 1 14 hm5C_associated_SNPs_29996 0 0 1 0 1 ZNF236 chr18:74631732 3'AG 74631732 Downstream 84bp
chr1 236711372 236711372 1 + G C LUSC 236711377 + 236711357 236711397 41 GGCGTACACAGCCTGGAGTACAAACACAGATTTAAAGAGCT GGCGTACACAGCCTGCAGTACAAACACAGATTTAAAGAGCT < 41bp 1 0.0659902580059509 1 0.116022676229477 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LGALS8 ENSG00000116977 CDS Human protein_coding chr1:236711377 chr1:236711372 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_29997 0 0 1 0 1 LGALS8 chr1:236711312 3'AG 236711312 Downstream 61bp
chr1 10328302 10328302 1 + C A LUSC 10328306 + 10328286 10328326 41 AAACACGATAATGAGACCAACCTTTCCACTGAGAAGGTAGG AAACACGATAATGAGAACAACCTTTCCACTGAGAAGGTAGG < 41bp 1 0.0031994542723983 1 0.0965732932090759 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10328306 chr1:10328302 nonsynonymous SNV 0.858 2 17 hm5C_associated_SNPs_29998 0 0 1 0 2 KIF1B chr1:10328210 3'AG 10328210 Downstream 93bp
chr1 10328302 10328302 1 + C A LUSC 10328306 + 10328286 10328326 41 AAACACGATAATGAGACCAACCTTTCCACTGAGAAGGTAGG AAACACGATAATGAGAACAACCTTTCCACTGAGAAGGTAGG < 41bp 1 0.0031994542723983 1 0.0965732932090759 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10328306 chr1:10328302 nonsynonymous SNV 0.858 2 17 hm5C_associated_SNPs_29998 0 0 1 0 2 KIF1B chr1:10328321 5'GT 10328321 Upstream 20bp
chrX 68059886 68059886 1 + G T LUSC 68059888 + 68059868 68059908 41 GTCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT GTCAAGATGGCCACACAGTCCCCTGGTAGTCGGGGCTCCCT < 41bp 1 0.198166450447158 1 0.0976914465427399 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059888 chrX:68059886 nonsynonymous SNV 0.830 1 19 hm5C_associated_SNPs_29999 0 0 0 0 2 EFNB1 chrX:68059803 3'AG 68059803 Downstream 84bp
chrX 68059886 68059886 1 + G T LUSC 68059888 + 68059868 68059908 41 GTCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT GTCAAGATGGCCACACAGTCCCCTGGTAGTCGGGGCTCCCT < 41bp 1 0.198166450447158 1 0.0976914465427399 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059888 chrX:68059886 nonsynonymous SNV 0.830 1 19 hm5C_associated_SNPs_29999 0 0 0 0 2 EFNB1 chrX:68059931 5'GT 68059931 Upstream 46bp
chr15 22993108 22993108 1 + G A LUSC 22993125 + 22993105 22993145 41 CGGGAGGTGGGGAACGCCATCCTCTTCTGCCTGCTCATCGA CGGAAGGTGGGGAACGCCATCCTCTTCTGCCTGCTCATCGA < 41bp 1 0.237977911652656 1 0.0632771551609039 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22993125 chr15:22993108 nonsynonymous SNV . 0 4 hm5C_associated_SNPs_30000 0 0 1 0 1 CYFIP1 chr15:22993025 3'AG 22993025 Downstream 84bp
chr15 22993108 22993108 1 + G A LUSC 22993126 + 22993106 22993146 41 GGGAGGTGGGGAACGCCATCCTCTTCTGCCTGCTCATCGAG GGAAGGTGGGGAACGCCATCCTCTTCTGCCTGCTCATCGAG < 41bp 1 0.395440161520979 1 0.319447696208954 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22993126 chr15:22993108 nonsynonymous SNV . 0 3 hm5C_associated_SNPs_30001 0 0 1 0 1 CYFIP1 chr15:22993025 3'AG 22993025 Downstream 84bp
chr1 28607288 28607288 1 + G A LUSC 28607298 + 28607278 28607318 41 TACGCCCTCCGTGCCATCACCCGCTACATGACCTGACTCCT TACGCCCTCCATGCCATCACCCGCTACATGACCTGACTCCT < 41bp 1 0.12629339729761 1 0.424368739128113 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SESN2 ENSG00000130766 CDS Human protein_coding chr1:28607298 chr1:28607288 nonsynonymous SNV 0.966 4 11 hm5C_associated_SNPs_30003 0 0 1 0 1 SESN2 chr1:28607227 3'AG 28607227 Downstream 62bp
chr2 46985754 46985754 1 + A T LUSC 46985774 + 46985754 46985794 41 AATGTGGACATGAACTCCAACAGATGTTTGTCTGTCAAAGA TATGTGGACATGAACTCCAACAGATGTTTGTCTGTCAAAGA < 41bp 1 0.411863457381309 1 0.19122377038002 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SOCS5 ENSG00000171150 CDS Human protein_coding chr2:46985774 chr2:46985754 nonsynonymous SNV 0.749 1 1 hm5C_associated_SNPs_30004 0 0 1 0 1 SOCS5 chr2:46985658 3'AG 46985658 Downstream 97bp
chr8 22106607 22106607 1 + C T LUSC 22106604 + 22106584 22106624 41 AAGAGGCCAAGATGAAGGCTCCTCCCAAAGCAGCCAGGAAG AAGAGGCCAAGATGAAGGCTCCTTCCAAAGCAGCCAGGAAG < 41bp 1 0.00791114605616628 1 0.085351288318634 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POLR3D ENSG00000168495 CDS Human protein_coding chr8:22106604 chr8:22106607 nonsynonymous SNV 0.933 0 24 hm5C_associated_SNPs_30005 0 0 1 0 1 POLR3D chr8:22106557 3'AG 22106557 Downstream 51bp
chr1 76253248 76253248 1 + G T LUSC 76253245 + 76253225 76253265 41 ACACTTTGTTATTGGAGAAACATGCAGATTATATCGCATCC ACACTTTGTTATTGGAGAAACATTCAGATTATATCGCATCC < 41bp 1 0.0937155281289494 1 0.126538038253784 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76253245 chr1:76253248 nonsynonymous SNV 0.984 1 24 hm5C_associated_SNPs_30006 0 0 1 0 2 RABGGTB chr1:76253182 3'AG 76253182 Downstream 67bp
chr1 76253248 76253248 1 + G T LUSC 76253245 + 76253225 76253265 41 ACACTTTGTTATTGGAGAAACATGCAGATTATATCGCATCC ACACTTTGTTATTGGAGAAACATTCAGATTATATCGCATCC < 41bp 1 0.0937155281289494 1 0.126538038253784 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76253245 chr1:76253248 nonsynonymous SNV 0.984 1 24 hm5C_associated_SNPs_30006 0 0 1 0 2 RABGGTB chr1:76253289 5'GT 76253289 Upstream 42bp
chr12 132464247 132464247 1 + C A LUSC 132464239 + 132464219 132464259 41 TTTTTCATCTTTTTTCCCAGCAGCAAGCCCTCGCAGGGAGC TTTTTCATCTTTTTTCCCAGCAGCAAGCACTCGCAGGGAGC < 41bp 1 0.22992883023013 1 0.241592735052109 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132464239 chr12:132464247 synonymous SNV . 0 29 hm5C_associated_SNPs_30007 0 0 1 0 3 EP400 chr12:132464239 3'AG 132464239 Downstream 9bp
chr12 132464247 132464247 1 + C A LUSC 132464239 + 132464219 132464259 41 TTTTTCATCTTTTTTCCCAGCAGCAAGCCCTCGCAGGGAGC TTTTTCATCTTTTTTCCCAGCAGCAAGCACTCGCAGGGAGC < 41bp 1 0.22992883023013 1 0.241592735052109 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132464239 chr12:132464247 synonymous SNV . 0 29 hm5C_associated_SNPs_30007 0 0 1 0 3 EP400 chr12:132464242 3'AG 132464242 Downstream 6bp
chr12 132464247 132464247 1 + C A LUSC 132464239 + 132464219 132464259 41 TTTTTCATCTTTTTTCCCAGCAGCAAGCCCTCGCAGGGAGC TTTTTCATCTTTTTTCCCAGCAGCAAGCACTCGCAGGGAGC < 41bp 1 0.22992883023013 1 0.241592735052109 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132464239 chr12:132464247 synonymous SNV . 0 29 hm5C_associated_SNPs_30007 0 0 1 0 3 EP400 chr12:132464338 5'GT 132464338 Upstream 92bp
chr12 95868045 95868045 1 + G T LUSC 95868059 + 95868039 95868079 41 CTCTACGGCTGAGGAAGCAGCCAAGAAAAAAAGACGAAAGA CTCTACTGCTGAGGAAGCAGCCAAGAAAAAAAGACGAAAGA < 41bp 1 0.281997608072049 1 0.510487496852875 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95868059 chr12:95868045 synonymous SNV . 0 7 hm5C_associated_SNPs_30009 0 0 1 0 1 METAP2 chr12:95868106 5'GT 95868106 Upstream 62bp
chr11 65826308 65826308 1 + G C LUSC 65826306 + 65826286 65826326 41 TCCTCCTCTTGACAGAAAAACCGGAAGCGTAGGAACCGAAA TCCTCCTCTTGACAGAAAAACCCGAAGCGTAGGAACCGAAA < 41bp 1 0.564129386269907 1 0.457736670970917 experiment 0.871741227460185 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65826306 chr11:65826308 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_30010 0 0 1 0 1 SF3B2 chr11:65826301 3'AG 65826301 Downstream 8bp
chr11 65826308 65826308 1 + G C LUSC 65826307 + 65826287 65826327 41 CCTCCTCTTGACAGAAAAACCGGAAGCGTAGGAACCGAAAG CCTCCTCTTGACAGAAAAACCCGAAGCGTAGGAACCGAAAG < 41bp 1 0.61105125559943 1 0.377191841602325 experiment 0.77789748880114 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65826307 chr11:65826308 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_30011 0 0 1 0 1 SF3B2 chr11:65826301 3'AG 65826301 Downstream 8bp
chr1 22336335 22336335 1 + C T LUSC 22336318 + 22336298 22336338 41 GGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGAC GGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCATTGAC < 41bp 1 0.717466254655678 1 0.213571697473526 experiment 0.565067490688644 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336318 chr1:22336335 synonymous SNV . 0 38 hm5C_associated_SNPs_30013 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 16bp
chr1 22336335 22336335 1 + C T LUSC 22336323 + 22336303 22336343 41 CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT CCCACGGTGTTCACTCGAGTCTCCGCCTTCATTGACTGGAT < 41bp 1 0.628609119932629 1 0.388385236263275 experiment 0.742781760134742 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336323 chr1:22336335 synonymous SNV . 0 33 hm5C_associated_SNPs_30014 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 16bp
chr1 22336335 22336335 1 + C T LUSC 22336326 + 22336306 22336346 41 ACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGA ACGGTGTTCACTCGAGTCTCCGCCTTCATTGACTGGATTGA < 41bp 1 0.358831467024346 1 0.0531032681465149 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336326 chr1:22336335 synonymous SNV . 0 30 hm5C_associated_SNPs_30015 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 16bp
chr1 22336335 22336335 1 + C T LUSC 22336329 + 22336309 22336349 41 GTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGA GTGTTCACTCGAGTCTCCGCCTTCATTGACTGGATTGAGGA < 41bp 1 0.468322024901362 1 0.753262281417847 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336329 chr1:22336335 synonymous SNV . 0 27 hm5C_associated_SNPs_30016 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 16bp
chr1 22336335 22336335 1 + C T LUSC 22336332 + 22336312 22336352 41 TTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGT TTCACTCGAGTCTCCGCCTTCATTGACTGGATTGAGGAGGT < 41bp 1 0.19202750531065 1 0.180877149105072 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336332 chr1:22336335 synonymous SNV . 0 24 hm5C_associated_SNPs_30017 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 16bp
chr6 133844288 133844288 1 + G T LUSC 133844283 + 133844263 133844303 41 TAGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTG TAGTTTAGGAGGTGCTTTCCCCATTTAGAATATTTACAGTG < 41bp 1 0.0798557491179707 1 0.242118328809738 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844283 chr6:133844288 stopgain 1.000 1 26 hm5C_associated_SNPs_30018 0 0 0 0 2 EYA4 chr6:133844194 3'AG 133844194 Downstream 95bp
chr6 133844288 133844288 1 + G T LUSC 133844283 + 133844263 133844303 41 TAGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTG TAGTTTAGGAGGTGCTTTCCCCATTTAGAATATTTACAGTG < 41bp 1 0.0798557491179707 1 0.242118328809738 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844283 chr6:133844288 stopgain 1.000 1 26 hm5C_associated_SNPs_30018 0 0 0 0 2 EYA4 chr6:133844315 5'GT 133844315 Upstream 28bp
chr6 133844288 133844288 1 + G T LUSC 133844284 + 133844264 133844304 41 AGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTGC AGTTTAGGAGGTGCTTTCCCCATTTAGAATATTTACAGTGC < 41bp 1 0.0446343900263251 1 0.238876193761826 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844284 chr6:133844288 stopgain 1.000 1 25 hm5C_associated_SNPs_30019 0 0 0 0 2 EYA4 chr6:133844194 3'AG 133844194 Downstream 95bp
chr6 133844288 133844288 1 + G T LUSC 133844284 + 133844264 133844304 41 AGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTGC AGTTTAGGAGGTGCTTTCCCCATTTAGAATATTTACAGTGC < 41bp 1 0.0446343900263251 1 0.238876193761826 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844284 chr6:133844288 stopgain 1.000 1 25 hm5C_associated_SNPs_30019 0 0 0 0 2 EYA4 chr6:133844315 5'GT 133844315 Upstream 28bp
chr17 35307618 35307618 1 + G C LUSC 35307610 + 35307590 35307630 41 TAGAAAACTGGCATCAGCCTCCCTCTTGGACACGGACAAAA TAGAAAACTGGCATCAGCCTCCCTCTTGCACACGGACAAAA < 41bp 1 0.0666448355761352 1 0.0796939730644226 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AATF ENSG00000108270 CDS Human other chr17:35307610 chr17:35307618 nonsynonymous SNV 0.999 3 29 hm5C_associated_SNPs_30020 0 0 1 0 1 AATF chr17:35307705 5'GT 35307705 Upstream 88bp
chr17 35307618 35307618 1 + G C LUSC 35307611 + 35307591 35307631 41 AGAAAACTGGCATCAGCCTCCCTCTTGGACACGGACAAAAG AGAAAACTGGCATCAGCCTCCCTCTTGCACACGGACAAAAG < 41bp 1 0.0616189432469465 1 0.060973733663559 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AATF ENSG00000108270 CDS Human other chr17:35307611 chr17:35307618 nonsynonymous SNV 0.999 3 28 hm5C_associated_SNPs_30021 0 0 1 0 1 AATF chr17:35307705 5'GT 35307705 Upstream 88bp
chr17 35307618 35307618 1 + G C LUSC 35307612 + 35307592 35307632 41 GAAAACTGGCATCAGCCTCCCTCTTGGACACGGACAAAAGG GAAAACTGGCATCAGCCTCCCTCTTGCACACGGACAAAAGG < 41bp 1 0.136296561463245 1 0.105169534683228 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AATF ENSG00000108270 CDS Human other chr17:35307612 chr17:35307618 nonsynonymous SNV 0.999 3 27 hm5C_associated_SNPs_30022 0 0 1 0 1 AATF chr17:35307705 5'GT 35307705 Upstream 88bp
chr17 35307618 35307618 1 + G C LUSC 35307614 + 35307594 35307634 41 AAACTGGCATCAGCCTCCCTCTTGGACACGGACAAAAGGTA AAACTGGCATCAGCCTCCCTCTTGCACACGGACAAAAGGTA < 41bp 1 0.089642690184132 1 0.449187278747559 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AATF ENSG00000108270 CDS Human other chr17:35307614 chr17:35307618 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_30023 0 0 1 0 1 AATF chr17:35307705 5'GT 35307705 Upstream 88bp
chr21 45560138 45560138 1 + G A LUSC 45560135 + 45560115 45560155 41 CTTTTGTCTCCCGGTAGGAGCACGTTTGCCGTGGACGGGAA CTTTTGTCTCCCGGTAGGAGCACATTTGCCGTGGACGGGAA < 41bp 1 0.336136930561073 1 0.150154560804367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45560135 chr21:45560138 synonymous SNV . 0 24 hm5C_associated_SNPs_30024 0 0 1 0 2 C21orf33 chr21:45560132 3'AG 45560132 Downstream 7bp
chr21 45560138 45560138 1 + G A LUSC 45560135 + 45560115 45560155 41 CTTTTGTCTCCCGGTAGGAGCACGTTTGCCGTGGACGGGAA CTTTTGTCTCCCGGTAGGAGCACATTTGCCGTGGACGGGAA < 41bp 1 0.336136930561073 1 0.150154560804367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45560135 chr21:45560138 synonymous SNV . 0 24 hm5C_associated_SNPs_30024 0 0 1 0 2 C21orf33 chr21:45560224 5'GT 45560224 Upstream 87bp
chr19 14037666 14037666 1 + C G LUSC 14037657 + 14037637 14037677 41 GAAGCTCAGAAAGACAAGACCAGTGTGATCAAGAACACAGA GAAGCTCAGAAAGACAAGACCAGTGTGATGAAGAACACAGA < 41bp 1 0.231589685158221 1 0.211398661136627 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14037657 chr19:14037666 nonsynonymous SNV 0.999 3 30 hm5C_associated_SNPs_30025 0 0 0 0 2 CC2D1A chr19:14037634 3'AG 14037634 Downstream 33bp
chr19 14037666 14037666 1 + C G LUSC 14037657 + 14037637 14037677 41 GAAGCTCAGAAAGACAAGACCAGTGTGATCAAGAACACAGA GAAGCTCAGAAAGACAAGACCAGTGTGATGAAGAACACAGA < 41bp 1 0.231589685158221 1 0.211398661136627 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14037657 chr19:14037666 nonsynonymous SNV 0.999 3 30 hm5C_associated_SNPs_30025 0 0 0 0 2 CC2D1A chr19:14037685 5'GT 14037685 Upstream 20bp
chr17 30692393 30692393 1 + C G LUSC 30692381 + 30692361 30692401 41 CTGTTCCACGTCCTGGAATTCCTCCAATGACTCAAGCACAG CTGTTCCACGTCCTGGAATTCCTCCAATGACTGAAGCACAG < 41bp 1 0.125268942460601 1 0.422957301139832 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30692381 chr17:30692393 nonsynonymous SNV 0.994 1 33 hm5C_associated_SNPs_30026 0 0 1 0 1 ZNF207 chr17:30692349 3'AG 30692349 Downstream 45bp
chr1 228468290 228468290 1 + C T LUSC 228468289 + 228468269 228468309 41 TCCGCAGAGGAGCGCGGCACCCTGGCCCTGCAGTGTGAAGT TCCGCAGAGGAGCGCGGCACCTTGGCCCTGCAGTGTGAAGT < 41bp 1 0.0892892580444111 1 0.0588892698287964 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228468289 chr1:228468290 synonymous SNV . 0 22 hm5C_associated_SNPs_30027 0 0 0 0 1 OBSCN chr1:228468231 3'AG 228468231 Downstream 60bp
chr16 1793359 1793359 1 + A T LUSC 1793369 + 1793349 1793389 41 ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACG ACCTCCCTGATCGTGTTCCCCCTGGCTGACGGCACGGTACG < 41bp 1 0.175580983868428 1 0.0924326777458191 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1793369 chr16:1793359 nonsynonymous SNV 0.988 2 11 hm5C_associated_SNPs_30028 0 0 1 0 2 MAPK8IP3 chr16:1793333 3'AG 1793333 Downstream 27bp
chr16 1793359 1793359 1 + A T LUSC 1793369 + 1793349 1793389 41 ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACG ACCTCCCTGATCGTGTTCCCCCTGGCTGACGGCACGGTACG < 41bp 1 0.175580983868428 1 0.0924326777458191 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1793369 chr16:1793359 nonsynonymous SNV 0.988 2 11 hm5C_associated_SNPs_30028 0 0 1 0 2 MAPK8IP3 chr16:1793336 3'AG 1793336 Downstream 24bp
chr11 67075202 67075202 1 + C G LUSC 67075191 + 67075171 67075211 41 CTGGAGTCTCTGCGGCCTCCCAGCGCCGAGCCTGGCGGGTC CTGGAGTCTCTGCGGCCTCCCAGCGCCGAGCGTGGCGGGTC < 41bp 1 0.694947355012638 1 0.822135746479034 experiment 0.610105289974723 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075191 chr11:67075202 nonsynonymous SNV 0.073 0 32 hm5C_associated_SNPs_30029 0 0 0 0 1 SSH3 chr11:67075208 5'GT 67075208 Upstream 7bp
chr16 28970404 28970404 1 + G A LUSC 28970409 + 28970389 28970429 41 AAACACCAGACACTGGAAGTCTCACTGTCTCGAGTGAGTGG AAACACCAGACACTGAAAGTCTCACTGTCTCGAGTGAGTGG < 41bp 1 0.324991872980054 1 0.164956897497177 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28970409 chr16:28970404 nonsynonymous SNV 0.968 1 16 hm5C_associated_SNPs_30033 0 0 1 0 2 NFATC2IP chr16:28970312 3'AG 28970312 Downstream 93bp
chr16 28970404 28970404 1 + G A LUSC 28970409 + 28970389 28970429 41 AAACACCAGACACTGGAAGTCTCACTGTCTCGAGTGAGTGG AAACACCAGACACTGAAAGTCTCACTGTCTCGAGTGAGTGG < 41bp 1 0.324991872980054 1 0.164956897497177 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28970409 chr16:28970404 nonsynonymous SNV 0.968 1 16 hm5C_associated_SNPs_30033 0 0 1 0 2 NFATC2IP chr16:28970421 5'GT 28970421 Upstream 18bp
chr7 44099195 44099195 1 + G A LUSC 44099175 + 44099155 44099195 41 GGAGCCGGCGCCCAGCACTCCTCCATGTCTGGTGCAGGCAG GGAGCCGGCGCCCAGCACTCCTCCATGTCTGGTGCAGGCAA < 41bp 1 0.772019908215284 1 0.980140089988708 experiment 0.455960183569433 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DBNL ENSG00000136279 CDS Human protein_coding chr7:44099175 chr7:44099195 nonsynonymous SNV 0.892 0 41 hm5C_associated_SNPs_30035 0 0 1 0 2 DBNL chr7:44099142 3'AG 44099142 Downstream 54bp
chr7 44099195 44099195 1 + G A LUSC 44099175 + 44099155 44099195 41 GGAGCCGGCGCCCAGCACTCCTCCATGTCTGGTGCAGGCAG GGAGCCGGCGCCCAGCACTCCTCCATGTCTGGTGCAGGCAA < 41bp 1 0.772019908215284 1 0.980140089988708 experiment 0.455960183569433 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DBNL ENSG00000136279 CDS Human protein_coding chr7:44099175 chr7:44099195 nonsynonymous SNV 0.892 0 41 hm5C_associated_SNPs_30035 0 0 1 0 2 DBNL chr7:44099257 5'GT 44099257 Upstream 63bp
chr6 133783597 133783597 1 + T C LUSC 133783602 + 133783582 133783622 41 CAGACAGGACAGCCCTACAGCTTGCCCACTTACGGTATTTC CAGACAGGACAGCCCCACAGCTTGCCCACTTACGGTATTTC < 41bp 1 0.0719484178796824 1 0.0752215981483459 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133783602 chr6:133783597 nonsynonymous SNV 1.000 5 16 hm5C_associated_SNPs_30036 0 0 0 0 1 EYA4 chr6:133783615 5'GT 133783615 Upstream 19bp
chr12 52370296 52370296 1 + C G LUSC 52370279 + 52370259 52370299 41 GAGACTGGACATGGAAGATCCCTCATGTGAGATGTGTCTCT GAGACTGGACATGGAAGATCCCTCATGTGAGATGTGTGTCT < 41bp 1 0.243325760653133 1 0.641049683094025 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52370279 chr12:52370296 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_30037 0 0 1 0 1 ACVR1B chr12:52370359 5'GT 52370359 Upstream 64bp
chr7 5338901 5338901 1 + G A LUSC 5338900 + 5338880 5338920 41 TGCACCGCTACGTGGTGGCGCGGGTGATCTGGGCCGACATG TGCACCGCTACGTGGTGGCGCAGGTGATCTGGGCCGACATG < 41bp 1 0.512870965203901 1 0.316390872001648 experiment 0.974258069592198 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5338900 chr7:5338901 nonsynonymous SNV 0.835 3 22 hm5C_associated_SNPs_30038 0 0 0 0 1 SLC29A4 chr7:5338871 3'AG 5338871 Downstream 31bp
chr6 80816585 80816585 1 + G T LUSC 80816605 + 80816585 80816625 41 GATCCGGAGCCCCGGGAGTACGGTGAGCCCTGGGACTGCCC TATCCGGAGCCCCGGGAGTACGGTGAGCCCTGGGACTGCCC < 41bp 1 0.793504188097281 1 0.451430946588516 experiment 0.412991623805439 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BCKDHB ENSG00000083123 CDS Human protein_coding chr6:80816605 chr6:80816585 nonsynonymous SNV 0.080 2 1 hm5C_associated_SNPs_30039 0 0 1 0 1 BCKDHB chr6:80816606 5'GT 80816606 Upstream 22bp
chr4 57179515 57179515 1 + G T LUSC 57179501 + 57179481 57179521 41 AGCACAAGCTGGCTGTTAAGCCAAAAAAACAGAGGGTGTCA AGCACAAGCTGGCTGTTAAGCCAAAAAAACAGAGTGTGTCA < 41bp 1 0.459163902036614 1 0.459245085716248 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57179501 chr4:57179515 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_30040 0 0 0 0 1 KIAA1211 chr4:57179545 5'GT 57179545 Upstream 31bp
chr19 14040228 14040228 1 + G A LUSC 14040234 + 14040214 14040254 41 CTCAGTGTGCTGGCGTTTGACCAAGAGCGTCTGGAGCGGAA CTCAGTGTGCTGGCATTTGACCAAGAGCGTCTGGAGCGGAA < 41bp 1 0.40016227514314 1 0.523492276668549 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14040234 chr19:14040228 synonymous SNV . 0 15 hm5C_associated_SNPs_30041 0 0 1 0 2 CC2D1A chr19:14040192 3'AG 14040192 Downstream 37bp
chr19 14040228 14040228 1 + G A LUSC 14040234 + 14040214 14040254 41 CTCAGTGTGCTGGCGTTTGACCAAGAGCGTCTGGAGCGGAA CTCAGTGTGCTGGCATTTGACCAAGAGCGTCTGGAGCGGAA < 41bp 1 0.40016227514314 1 0.523492276668549 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14040234 chr19:14040228 synonymous SNV . 0 15 hm5C_associated_SNPs_30041 0 0 1 0 2 CC2D1A chr19:14040255 5'GT 14040255 Upstream 28bp
chr11 67075204 67075204 1 + G A LUSC 67075191 + 67075171 67075211 41 CTGGAGTCTCTGCGGCCTCCCAGCGCCGAGCCTGGCGGGTC CTGGAGTCTCTGCGGCCTCCCAGCGCCGAGCCTAGCGGGTC < 41bp 1 0.652482808425626 1 0.753484070301056 experiment 0.695034383148749 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075191 chr11:67075204 nonsynonymous SNV 0.101 0 34 hm5C_associated_SNPs_30043 0 0 0 0 1 SSH3 chr11:67075208 5'GT 67075208 Upstream 5bp
chr6 84629158 84629158 1 + A G LUSC 84629154 + 84629134 84629174 41 AGACTCTTTAGTCACCATTGCCATATATACTAAACAGAAGG AGACTCTTTAGTCACCATTGCCATGTATACTAAACAGAAGG < 41bp 1 0.0538000758415761 1 0.403558313846588 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYB5R4 ENSG00000065615 CDS Human protein_coding chr6:84629154 chr6:84629158 nonsynonymous SNV 0.980 2 25 hm5C_associated_SNPs_30044 0 0 1 0 2 CYB5R4 chr6:84629116 3'AG 84629116 Downstream 43bp
chr6 84629158 84629158 1 + A G LUSC 84629154 + 84629134 84629174 41 AGACTCTTTAGTCACCATTGCCATATATACTAAACAGAAGG AGACTCTTTAGTCACCATTGCCATGTATACTAAACAGAAGG < 41bp 1 0.0538000758415761 1 0.403558313846588 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYB5R4 ENSG00000065615 CDS Human protein_coding chr6:84629154 chr6:84629158 nonsynonymous SNV 0.980 2 25 hm5C_associated_SNPs_30044 0 0 1 0 2 CYB5R4 chr6:84629173 5'GT 84629173 Upstream 16bp
chr3 148559709 148559709 1 + G A LUSC 148559690 + 148559670 148559710 41 GAGTGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGA GAGTGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAAA < 41bp 1 0.522308704107962 1 0.668289184570312 experiment 0.955382591784077 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559690 chr3:148559709 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_30045 0 0 0 0 2 CPB1 chr3:148559610 3'AG 148559610 Downstream 100bp
chr3 148559709 148559709 1 + G A LUSC 148559690 + 148559670 148559710 41 GAGTGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGA GAGTGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAAA < 41bp 1 0.522308704107962 1 0.668289184570312 experiment 0.955382591784077 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559690 chr3:148559709 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_30045 0 0 0 0 2 CPB1 chr3:148559711 5'GT 148559711 Upstream 3bp
chr3 148559709 148559709 1 + G A LUSC 148559693 + 148559673 148559713 41 TGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGAGGT TGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAAAGGT < 41bp 1 0.129459809808948 1 0.436480909585953 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559693 chr3:148559709 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_30046 0 0 0 0 2 CPB1 chr3:148559610 3'AG 148559610 Downstream 100bp
chr3 148559709 148559709 1 + G A LUSC 148559693 + 148559673 148559713 41 TGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGAGGT TGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAAAGGT < 41bp 1 0.129459809808948 1 0.436480909585953 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559693 chr3:148559709 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_30046 0 0 0 0 2 CPB1 chr3:148559711 5'GT 148559711 Upstream 3bp
chr3 148559709 148559709 1 + G A LUSC 148559694 + 148559674 148559714 41 GGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGAGGTC GGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAAAGGTC < 41bp 1 0.420139447047504 1 0.381297290325165 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559694 chr3:148559709 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_30047 0 0 0 0 2 CPB1 chr3:148559610 3'AG 148559610 Downstream 100bp
chr3 148559709 148559709 1 + G A LUSC 148559694 + 148559674 148559714 41 GGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGAGGTC GGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAAAGGTC < 41bp 1 0.420139447047504 1 0.381297290325165 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559694 chr3:148559709 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_30047 0 0 0 0 2 CPB1 chr3:148559711 5'GT 148559711 Upstream 3bp
chr19 6833256 6833256 1 + G C LUSC 6833263 + 6833243 6833283 41 GATGTTCTCCTTTGAGGAGACCACATCCTGCAAGGCCTGTC GATGTTCTCCTTTCAGGAGACCACATCCTGCAAGGCCTGTC < 41bp 1 0.378739677221029 1 0.173932582139969 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VAV1 ENSG00000141968 CDS Human protein_coding chr19:6833263 chr19:6833256 nonsynonymous SNV 0.994 2 14 hm5C_associated_SNPs_30048 0 0 0 0 2 VAV1 chr19:6833195 3'AG 6833195 Downstream 62bp
chr19 6833256 6833256 1 + G C LUSC 6833263 + 6833243 6833283 41 GATGTTCTCCTTTGAGGAGACCACATCCTGCAAGGCCTGTC GATGTTCTCCTTTCAGGAGACCACATCCTGCAAGGCCTGTC < 41bp 1 0.378739677221029 1 0.173932582139969 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VAV1 ENSG00000141968 CDS Human protein_coding chr19:6833263 chr19:6833256 nonsynonymous SNV 0.994 2 14 hm5C_associated_SNPs_30048 0 0 0 0 2 VAV1 chr19:6833296 5'GT 6833296 Upstream 41bp
chr7 142457357 142457357 1 + A T LUSC 142457345 + 142457325 142457365 41 ACTCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTG ACTCTACCACCATGAATCCACTCCTGATCCTTTCCTTTGTG < 41bp 1 0.255805525734731 1 0.0811909735202789 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457345 chr7:142457357 nonsynonymous SNV 0.007 1 33 hm5C_associated_SNPs_30050 0 0 0 2 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 19bp
chr7 142457357 142457357 1 + A T LUSC 142457347 + 142457327 142457367 41 TCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGC TCTACCACCATGAATCCACTCCTGATCCTTTCCTTTGTGGC < 41bp 1 0.204979556084177 1 0.197391301393509 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457347 chr7:142457357 nonsynonymous SNV 0.007 1 31 hm5C_associated_SNPs_30051 0 0 0 2 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 19bp
chr7 142457357 142457357 1 + A T LUSC 142457348 + 142457328 142457368 41 CTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGCA CTACCACCATGAATCCACTCCTGATCCTTTCCTTTGTGGCA < 41bp 1 0.100145380202614 1 0.229956537485123 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457348 chr7:142457357 nonsynonymous SNV 0.007 1 30 hm5C_associated_SNPs_30052 0 0 0 2 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 19bp
chr7 142457357 142457357 1 + A T LUSC 142457353 + 142457333 142457373 41 ACCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGC ACCATGAATCCACTCCTGATCCTTTCCTTTGTGGCAGCTGC < 41bp 1 0.0196621782102771 1 0.0446183979511261 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457353 chr7:142457357 nonsynonymous SNV 0.007 1 25 hm5C_associated_SNPs_30053 0 0 0 2 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 19bp
chr7 142457357 142457357 1 + A T LUSC 142457354 + 142457334 142457374 41 CCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCT CCATGAATCCACTCCTGATCCTTTCCTTTGTGGCAGCTGCT < 41bp 1 0.0262562903662625 1 0.0475067794322968 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457354 chr7:142457357 nonsynonymous SNV 0.007 1 24 hm5C_associated_SNPs_30054 0 0 0 2 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 19bp
chr7 142457357 142457357 1 + A T LUSC 142457358 + 142457338 142457378 41 GAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTG GAATCCACTCCTGATCCTTTCCTTTGTGGCAGCTGCTCGTG < 41bp 1 0.0499996042369919 1 0.031903088092804 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457358 chr7:142457357 nonsynonymous SNV 0.007 1 20 hm5C_associated_SNPs_30055 0 0 0 2 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 19bp
chr7 142457357 142457357 1 + A T LUSC 142457359 + 142457339 142457379 41 AATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTGA AATCCACTCCTGATCCTTTCCTTTGTGGCAGCTGCTCGTGA < 41bp 1 0.156215873170273 1 0.245361864566803 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457359 chr7:142457357 nonsynonymous SNV 0.007 1 19 hm5C_associated_SNPs_30056 0 0 0 2 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 19bp
chr7 142457357 142457357 1 + A T LUSC 142457367 + 142457347 142457387 41 CCTGATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATG CCTGATCCTTTCCTTTGTGGCAGCTGCTCGTGAGTATCATG < 41bp 1 0.312599326084921 1 0.280895888805389 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457367 chr7:142457357 nonsynonymous SNV 0.007 1 11 hm5C_associated_SNPs_30057 0 0 0 2 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 19bp
chr7 142457357 142457357 1 + A T LUSC 142457370 + 142457350 142457390 41 GATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCC GATCCTTTCCTTTGTGGCAGCTGCTCGTGAGTATCATGCCC < 41bp 1 0.291753036499528 1 0.164523065090179 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457370 chr7:142457357 nonsynonymous SNV 0.007 1 8 hm5C_associated_SNPs_30058 0 0 0 2 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 19bp
chr7 142457357 142457357 1 + A T LUSC 142457373 + 142457353 142457393 41 CCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCCTGC CCTTTCCTTTGTGGCAGCTGCTCGTGAGTATCATGCCCTGC < 41bp 1 0.511738413848006 1 0.211803942918777 experiment 0.976523172303988 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457373 chr7:142457357 nonsynonymous SNV 0.007 1 5 hm5C_associated_SNPs_30059 0 0 0 2 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 19bp
chr22 50882466 50882466 1 + G A LUSC 50882453 + 50882433 50882473 41 ACCCACCCCAGCAGTCTCTTCTGCACTGGCCGTGGCGGTCC ACCCACCCCAGCAGTCTCTTCTGCACTGGCCGTAGCGGTCC < 41bp 1 0.769731528482063 1 0.87900710105896 experiment 0.460536943035873 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50882453 chr22:50882466 synonymous SNV . 0 34 hm5C_associated_SNPs_30062 0 0 1 0 1 PPP6R2 chr22:50882546 5'GT 50882546 Upstream 81bp
chr22 50882466 50882466 1 + G A LUSC 50882468 + 50882448 50882488 41 CTCTTCTGCACTGGCCGTGGCGGTCCCCCTAGGGCCCATCA CTCTTCTGCACTGGCCGTAGCGGTCCCCCTAGGGCCCATCA < 41bp 1 0.266030351983998 1 0.375464290380478 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50882468 chr22:50882466 synonymous SNV . 0 19 hm5C_associated_SNPs_30063 0 0 1 0 1 PPP6R2 chr22:50882546 5'GT 50882546 Upstream 81bp
chr7 101837153 101837153 1 + G A LUSC 101837147 + 101837127 101837167 41 TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA TGAAGTCCATGGAGTTTGCACCGTCCAAGGGCGCTGGGACA < 41bp 1 0.0197239484229832 1 0.388153910636902 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837147 chr7:101837153 nonsynonymous SNV 0.725 2 27 hm5C_associated_SNPs_30064 0 0 1 0 2 CUX1 chr7:101837122 3'AG 101837122 Downstream 32bp
chr7 101837153 101837153 1 + G A LUSC 101837147 + 101837127 101837167 41 TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA TGAAGTCCATGGAGTTTGCACCGTCCAAGGGCGCTGGGACA < 41bp 1 0.0197239484229832 1 0.388153910636902 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837147 chr7:101837153 nonsynonymous SNV 0.725 2 27 hm5C_associated_SNPs_30064 0 0 1 0 2 CUX1 chr7:101837170 5'GT 101837170 Upstream 18bp
chr7 101837153 101837153 1 + G A LUSC 101837148 + 101837128 101837168 41 GAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC GAAGTCCATGGAGTTTGCACCGTCCAAGGGCGCTGGGACAC < 41bp 1 0.0650381216391876 1 0.481105208396912 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837148 chr7:101837153 nonsynonymous SNV 0.725 2 26 hm5C_associated_SNPs_30065 0 0 1 0 2 CUX1 chr7:101837122 3'AG 101837122 Downstream 32bp
chr7 101837153 101837153 1 + G A LUSC 101837148 + 101837128 101837168 41 GAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC GAAGTCCATGGAGTTTGCACCGTCCAAGGGCGCTGGGACAC < 41bp 1 0.0650381216391876 1 0.481105208396912 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837148 chr7:101837153 nonsynonymous SNV 0.725 2 26 hm5C_associated_SNPs_30065 0 0 1 0 2 CUX1 chr7:101837170 5'GT 101837170 Upstream 18bp
chrX 123224561 123224561 1 + C T LUSC 123224558 + 123224538 123224578 41 AGATTACGGCCTGAGGATAGCTTCATGAGTGTTTATCCAAT AGATTACGGCCTGAGGATAGCTTTATGAGTGTTTATCCAAT < 41bp 1 0.269743452542122 1 0.0715199708938599 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123224558 chrX:123224561 synonymous SNV . 0 24 hm5C_associated_SNPs_30066 0 0 1 0 1 STAG2 chrX:123224614 5'GT 123224614 Upstream 54bp
chr20 42169587 42169587 1 + G C LUSC 42169585 + 42169565 42169605 41 CCCCACCAGGCAAGAATAGTCAGAGTGACCCATGTATCTGG CCCCACCAGGCAAGAATAGTCACAGTGACCCATGTATCTGG < 41bp 1 0.628901077022689 1 0.66681706905365 experiment 0.742197845954621 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control L3MBTL1 ENSG00000185513 CDS Human protein_coding chr20:42169585 chr20:42169587 nonsynonymous SNV 0.160 0 23 hm5C_associated_SNPs_30067 0 0 1 0 1 L3MBTL1 chr20:42169574 3'AG 42169574 Downstream 14bp
chr16 601555 601555 1 + G A LUSC 601540 + 601520 601560 41 GGCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGC GGCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAACAGCAGC < 41bp 1 0.0250076417561774 1 0.0636005997657776 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601540 chr16:601555 nonsynonymous SNV 0.987 5 36 hm5C_associated_SNPs_30068 0 0 1 0 1 CAPN15 chr16:601512 3'AG 601512 Downstream 44bp
chr16 601555 601555 1 + G A LUSC 601547 + 601527 601567 41 AAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGCTGGTCCG AAACCCGTGGGGCCGTTTCTCCTGGAACAGCAGCTGGTCCG < 41bp 1 0.461297776270409 1 0.928219199180603 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601547 chr16:601555 nonsynonymous SNV 0.987 5 29 hm5C_associated_SNPs_30069 0 0 1 0 1 CAPN15 chr16:601512 3'AG 601512 Downstream 44bp
chr22 42042981 42042981 1 + A C LUSC 42042976 + 42042956 42042996 41 TCCAGAAGGCTCTCAAGCCTCCTCCAATAAAGCTCTATCGG TCCAGAAGGCTCTCAAGCCTCCTCCCATAAAGCTCTATCGG < 41bp 1 0.0840077204783094 1 0.197765409946442 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42042976 chr22:42042981 synonymous SNV . 0 26 hm5C_associated_SNPs_30070 0 0 1 0 1 XRCC6 chr22:42042900 3'AG 42042900 Downstream 82bp
chr8 77619827 77619827 1 + A T LUSC 77619825 + 77619805 77619845 41 TCCGGCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCC TCCGGCTTGCCAGTGGTCAGCTTATGGGTGATGACCTGTCC < 41bp 1 0.105811713623167 1 0.0982119739055634 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77619825 chr8:77619827 synonymous SNV . 0 23 hm5C_associated_SNPs_30071 0 0 1 0 1 ZFHX4 chr8:77619781 3'AG 77619781 Downstream 47bp
chr22 39078929 39078929 1 + C G LUSC 39078940 + 39078920 39078960 41 CTTTATGATCCTGGTTCTTCCCGTTGTCTTTGAGACGGAGA CTTTATGATGCTGGTTCTTCCCGTTGTCTTTGAGACGGAGA < 41bp 1 0.298018743355741 1 0.137838870286942 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078940 chr22:39078929 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_30075 0 0 1 0 2 TOMM22 chr22:39078884 3'AG 39078884 Downstream 46bp
chr22 39078929 39078929 1 + C G LUSC 39078940 + 39078920 39078960 41 CTTTATGATCCTGGTTCTTCCCGTTGTCTTTGAGACGGAGA CTTTATGATGCTGGTTCTTCCCGTTGTCTTTGAGACGGAGA < 41bp 1 0.298018743355741 1 0.137838870286942 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078940 chr22:39078929 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_30075 0 0 1 0 2 TOMM22 chr22:39079001 5'GT 39079001 Upstream 73bp
chr3 39431976 39431976 1 + G T LUSC 39431995 + 39431975 39432015 41 GGCCTTTGGAAAGGGATGTCCCCTGTAAGCTGCCATCTGGG GTCCTTTGGAAAGGGATGTCCCCTGTAAGCTGCCATCTGGG < 41bp 1 0.281440385781648 1 0.11727699637413 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431995 chr3:39431976 nonsynonymous SNV 0.996 5 2 hm5C_associated_SNPs_30077 0 0 1 0 2 SLC25A38 chr3:39431914 3'AG 39431914 Downstream 63bp
chr3 39431976 39431976 1 + G T LUSC 39431995 + 39431975 39432015 41 GGCCTTTGGAAAGGGATGTCCCCTGTAAGCTGCCATCTGGG GTCCTTTGGAAAGGGATGTCCCCTGTAAGCTGCCATCTGGG < 41bp 1 0.281440385781648 1 0.11727699637413 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431995 chr3:39431976 nonsynonymous SNV 0.996 5 2 hm5C_associated_SNPs_30077 0 0 1 0 2 SLC25A38 chr3:39431998 5'GT 39431998 Upstream 23bp
chr1 154947241 154947241 1 + A G LUSC 154947230 + 154947210 154947250 41 AACCGAGCGATCATGTCGCACAAACAAATTTACTATTCGGA AACCGAGCGATCATGTCGCACAAACAAATTTGCTATTCGGA < 41bp 1 0.0905730069349028 1 0.128744810819626 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CKS1B ENSG00000173207 CDS Human protein_coding chr1:154947230 chr1:154947241 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_30079 0 0 1 0 1 CKS1B chr1:154947280 5'GT 154947280 Upstream 40bp
chr8 145692682 145692682 1 + G T LUSC 145692679 + 145692659 145692699 41 GGGGGAGGCAGGCCCTGCTCCAGGGGACTCAGCCAGCCCCT GGGGGAGGCAGGCCCTGCTCCAGTGGACTCAGCCAGCCCCT < 41bp 1 0.634799251770495 1 0.877166867256165 experiment 0.73040149645901 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145692679 chr8:145692682 nonsynonymous SNV 0.966 2 24 hm5C_associated_SNPs_30080 0 0 0 0 2 KIFC2 chr8:145692586 3'AG 145692586 Downstream 97bp
chr8 145692682 145692682 1 + G T LUSC 145692679 + 145692659 145692699 41 GGGGGAGGCAGGCCCTGCTCCAGGGGACTCAGCCAGCCCCT GGGGGAGGCAGGCCCTGCTCCAGTGGACTCAGCCAGCCCCT < 41bp 1 0.634799251770495 1 0.877166867256165 experiment 0.73040149645901 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145692679 chr8:145692682 nonsynonymous SNV 0.966 2 24 hm5C_associated_SNPs_30080 0 0 0 0 2 KIFC2 chr8:145692724 5'GT 145692724 Upstream 43bp
chr5 148712284 148712284 1 + G T LUSC 148712291 + 148712271 148712311 41 GGCTCTGGAAGAAGCCGTGGCCACCCTGGAAGCTCAGTGTC GGCTCTGGAAGAATCCGTGGCCACCCTGGAAGCTCAGTGTC < 41bp 1 0.0878782811161228 1 0.0289046466350555 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148712291 chr5:148712284 nonsynonymous SNV 0.994 1 14 hm5C_associated_SNPs_30081 0 0 0 0 1 AFAP1L1 chr5:148712258 3'AG 148712258 Downstream 27bp
chr2 74154148 74154148 1 + G T LUSC 74154149 + 74154129 74154169 41 GCCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAA GCCTGCACGCGGGGCGCGGTCCCCGAAGGCTCTCCATCGAA < 41bp 1 0.745472061050233 1 0.259287863969803 experiment 0.509055877899535 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154149 chr2:74154148 synonymous SNV . 0 20 hm5C_associated_SNPs_30082 0 0 1 0 1 DGUOK chr2:74154179 5'GT 74154179 Upstream 32bp
chr20 2635176 2635176 1 + G C LUSC 2635157 + 2635137 2635177 41 GGGGATCCCAAGATTGGTGCCGCAATACAGGAGGAGTTAGG GGGGATCCCAAGATTGGTGCCGCAATACAGGAGGAGTTACG < 41bp 1 0.570498156866297 1 0.331920742988586 experiment 0.859003686267406 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635157 chr20:2635176 nonsynonymous SNV 0.999 2 40 hm5C_associated_SNPs_30083 0 0 1 4 1 NOP56 chr20:2635221 5'GT 2635221 Upstream 46bp
chr20 2635176 2635176 1 + G C LUSC 2635184 + 2635164 2635204 41 CAGGAGGAGTTAGGGTACAACTGCCAGACTGGAGGAGTCAT CAGGAGGAGTTACGGTACAACTGCCAGACTGGAGGAGTCAT < 41bp 1 0.411798929874402 1 0.105524927377701 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635184 chr20:2635176 nonsynonymous SNV 0.999 2 13 hm5C_associated_SNPs_30084 0 0 1 4 1 NOP56 chr20:2635221 5'GT 2635221 Upstream 46bp
chr14 21553028 21553028 1 + G T LUSC 21553017 + 21552997 21553037 41 TTCTCTTCGAGCATCTCCTCCTGTTCAGCAAGCTCAAGGGC TTCTCTTCGAGCATCTCCTCCTGTTCAGCAATCTCAAGGGC < 41bp 1 0.130319655435112 1 0.13311642408371 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21553017 chr14:21553028 nonsynonymous SNV 0.999 4 32 hm5C_associated_SNPs_30086 0 0 1 0 1 ARHGEF40 chr14:21553082 5'GT 21553082 Upstream 55bp
chr14 21553029 21553029 1 + C A LUSC 21553017 + 21552997 21553037 41 TTCTCTTCGAGCATCTCCTCCTGTTCAGCAAGCTCAAGGGC TTCTCTTCGAGCATCTCCTCCTGTTCAGCAAGATCAAGGGC < 41bp 1 0.106198768060533 1 0.134794294834137 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21553017 chr14:21553029 nonsynonymous SNV 0.999 0 33 hm5C_associated_SNPs_30087 0 0 1 0 1 ARHGEF40 chr14:21553082 5'GT 21553082 Upstream 54bp
chr12 62931458 62931458 1 + C A LUSC 62931443 + 62931423 62931463 41 CTTGGCGCATTGCCATGGGGCTGTTCTTGGAACATCATGGC CTTGGCGCATTGCCATGGGGCTGTTCTTGGAACATAATGGC < 41bp 1 0.12968318831979 1 0.0507639944553375 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62931443 chr12:62931458 stopgain 0.997 1 36 hm5C_associated_SNPs_30088 0 0 1 0 2 MON2 chr12:62931382 3'AG 62931382 Downstream 77bp
chr12 62931458 62931458 1 + C A LUSC 62931443 + 62931423 62931463 41 CTTGGCGCATTGCCATGGGGCTGTTCTTGGAACATCATGGC CTTGGCGCATTGCCATGGGGCTGTTCTTGGAACATAATGGC < 41bp 1 0.12968318831979 1 0.0507639944553375 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62931443 chr12:62931458 stopgain 0.997 1 36 hm5C_associated_SNPs_30088 0 0 1 0 2 MON2 chr12:62931486 5'GT 62931486 Upstream 29bp
chr4 5733346 5733346 1 + C A LUSC 5733343 + 5733323 5733363 41 AGGTTTCTCAGCCGCACCTTCCTCCGGGTGAACGCCTTCCC AGGTTTCTCAGCCGCACCTTCCTACGGGTGAACGCCTTCCC < 41bp 1 0.0343286881840291 1 0.168559163808823 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EVC ENSG00000072840 CDS Human protein_coding chr4:5733343 chr4:5733346 synonymous SNV . 0 24 hm5C_associated_SNPs_30089 0 0 1 0 1 EVC chr4:5733384 5'GT 5733384 Upstream 39bp
chr1 240492695 240492695 1 + T A LUSC 240492713 + 240492693 240492733 41 CCTGTTCCAGTCCACATTTTCAGAAAGCATTTGCTCAATTC CCAGTTCCAGTCCACATTTTCAGAAAGCATTTGCTCAATTC < 41bp 1 0.494285600324299 1 0.804774641990662 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FMN2 ENSG00000155816 CDS Human protein_coding chr1:240492713 chr1:240492695 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_30090 0 0 0 0 2 FMN2 chr1:240492639 3'AG 240492639 Downstream 57bp
chr1 240492695 240492695 1 + T A LUSC 240492713 + 240492693 240492733 41 CCTGTTCCAGTCCACATTTTCAGAAAGCATTTGCTCAATTC CCAGTTCCAGTCCACATTTTCAGAAAGCATTTGCTCAATTC < 41bp 1 0.494285600324299 1 0.804774641990662 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FMN2 ENSG00000155816 CDS Human protein_coding chr1:240492713 chr1:240492695 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_30090 0 0 0 0 2 FMN2 chr1:240492768 5'GT 240492768 Upstream 74bp
chr17 35310518 35310518 1 + G T LUSC 35310535 + 35310515 35310555 41 GATGATGGTGTGGTGATGACCTTCTCTAGTGTCAAAGTTTC GATTATGGTGTGGTGATGACCTTCTCTAGTGTCAAAGTTTC < 41bp 1 0.2565810474511 1 0.079436331987381 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control AATF ENSG00000108270 CDS Human other chr17:35310535 chr17:35310518 nonsynonymous SNV 0.225 3 4 hm5C_associated_SNPs_30091 0 0 1 1 1 AATF chr17:35310596 5'GT 35310596 Upstream 79bp
chr17 35310518 35310518 1 + G T LUSC 35310538 + 35310518 35310558 41 GATGGTGTGGTGATGACCTTCTCTAGTGTCAAAGTTTCTGA TATGGTGTGGTGATGACCTTCTCTAGTGTCAAAGTTTCTGA < 41bp 1 0.704268447055228 1 0.880374431610107 experiment 0.591463105889543 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AATF ENSG00000108270 CDS Human other chr17:35310538 chr17:35310518 nonsynonymous SNV 0.225 3 1 hm5C_associated_SNPs_30092 0 0 1 1 1 AATF chr17:35310596 5'GT 35310596 Upstream 79bp
chr1 183101650 183101650 1 + G A LUSC 183101642 + 183101622 183101662 41 ACTGGCAGGAGAAAATCAAACAGCATTTGAGATTGAAGAGC ACTGGCAGGAGAAAATCAAACAGCATTTAAGATTGAAGAGC < 41bp 1 0.719283119974723 1 0.581237196922302 experiment 0.561433760050554 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183101642 chr1:183101650 nonsynonymous SNV 0.998 1 29 hm5C_associated_SNPs_30094 0 0 1 0 1 LAMC1 chr1:183101672 5'GT 183101672 Upstream 23bp
chr1 183101650 183101650 1 + G A LUSC 183101645 + 183101625 183101665 41 GGCAGGAGAAAATCAAACAGCATTTGAGATTGAAGAGCTTA GGCAGGAGAAAATCAAACAGCATTTAAGATTGAAGAGCTTA < 41bp 1 0.0197384850546173 1 0.117018401622772 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183101645 chr1:183101650 nonsynonymous SNV 0.998 1 26 hm5C_associated_SNPs_30095 0 0 1 0 1 LAMC1 chr1:183101672 5'GT 183101672 Upstream 23bp
chr14 64990087 64990087 1 + G A LUSC 64990092 + 64990072 64990112 41 GAGAGCGTCAGTTGCGACTGCACAATGATATGCACAAAGGC GAGAGCGTCAGTTGCAACTGCACAATGATATGCACAAAGGC < 41bp 1 0.636555537515183 1 0.591628432273865 experiment 0.726888924969634 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZBTB1 ENSG00000126804 CDS Human protein_coding chr14:64990092 chr14:64990087 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_30096 0 0 1 0 1 ZBTB1 chr14:64990120 5'GT 64990120 Upstream 34bp
chr22 42262852 42262852 1 + A G LUSC 42262872 + 42262852 42262892 41 AGTAATCAAGTGGGAGAGTTCCCTGACTTGTTTTCAGAACA GGTAATCAAGTGGGAGAGTTCCCTGACTTGTTTTCAGAACA < 41bp 1 0.0918231842026682 1 0.259680479764938 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42262872 chr22:42262852 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_30097 0 0 1 0 1 SREBF2 chr22:42262835 3'AG 42262835 Downstream 18bp
chr11 128680432 128680432 1 + A T LUSC 128680424 + 128680404 128680444 41 AGCGCCAACGCCAGCTGTATCACCTGGGAGGGGACCAACGG AGCGCCAACGCCAGCTGTATCACCTGGGTGGGGACCAACGG < 41bp 1 0.741578166587788 1 0.231009960174561 experiment 0.516843666824425 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FLI1 ENSG00000151702 CDS Human protein_coding chr11:128680424 chr11:128680432 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_30101 0 0 0 0 1 FLI1 chr11:128680354 3'AG 128680354 Downstream 79bp
chr12 3047309 3047309 1 + G A LUSC 3047297 + 3047277 3047317 41 CAGAACCATGACAGTTTGCTCTCAAGGTGGCAGAACAGAAC CAGAACCATGACAGTTTGCTCTCAAGGTGGCAAAACAGAAC < 41bp 1 0.57112218867544 1 0.699701488018036 experiment 0.85775562264912 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TULP3 ENSG00000078246 CDS Human protein_coding chr12:3047297 chr12:3047309 synonymous SNV . 0 33 hm5C_associated_SNPs_30102 0 0 1 0 1 TULP3 chr12:3047280 3'AG 3047280 Downstream 30bp
chr3 179478921 179478921 1 + C T LUSC 179478903 + 179478883 179478923 41 CCTGTTGTGCTCTGTAGCATCAGACATCGATGAGTCATCAG CCTGTTGTGCTCTGTAGCATCAGACATCGATGAGTCATTAG < 41bp 1 0.293018132816359 1 0.548521280288696 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control USP13 ENSG00000058056 CDS Human protein_coding chr3:179478903 chr3:179478921 nonsynonymous SNV 0.842 1 39 hm5C_associated_SNPs_30103 0 0 1 0 1 USP13 chr3:179478900 3'AG 179478900 Downstream 22bp
chr13 28752068 28752068 1 + G T LUSC 28752051 + 28752031 28752071 41 TTTAATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAA TTTAATGACTTTGGTGCCCTCAACATCTCTCAGAGACTAAA < 41bp 1 0.554163887159756 1 0.150904089212418 experiment 0.891672225680488 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752051 chr13:28752068 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_30104 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 67bp
chr13 28752068 28752068 1 + G T LUSC 28752051 + 28752031 28752071 41 TTTAATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAA TTTAATGACTTTGGTGCCCTCAACATCTCTCAGAGACTAAA < 41bp 1 0.554163887159756 1 0.150904089212418 experiment 0.891672225680488 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752051 chr13:28752068 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_30104 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 5bp
chr13 28752068 28752068 1 + G T LUSC 28752054 + 28752034 28752074 41 AATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGT AATGACTTTGGTGCCCTCAACATCTCTCAGAGACTAAAGGT < 41bp 1 0.133713520370696 1 0.223930299282074 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752054 chr13:28752068 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_30105 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 67bp
chr13 28752068 28752068 1 + G T LUSC 28752054 + 28752034 28752074 41 AATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGT AATGACTTTGGTGCCCTCAACATCTCTCAGAGACTAAAGGT < 41bp 1 0.133713520370696 1 0.223930299282074 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752054 chr13:28752068 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_30105 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 5bp
chr13 28752068 28752068 1 + G T LUSC 28752057 + 28752037 28752077 41 GACTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGG GACTTTGGTGCCCTCAACATCTCTCAGAGACTAAAGGTAGG < 41bp 1 0.137799040017269 1 0.265989243984222 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752057 chr13:28752068 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_30106 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 67bp
chr13 28752068 28752068 1 + G T LUSC 28752057 + 28752037 28752077 41 GACTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGG GACTTTGGTGCCCTCAACATCTCTCAGAGACTAAAGGTAGG < 41bp 1 0.137799040017269 1 0.265989243984222 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752057 chr13:28752068 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_30106 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 5bp
chr13 28752068 28752068 1 + G T LUSC 28752059 + 28752039 28752079 41 CTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGGTG CTTTGGTGCCCTCAACATCTCTCAGAGACTAAAGGTAGGTG < 41bp 1 0.47368409519063 1 0.117829352617264 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752059 chr13:28752068 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_30107 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 67bp
chr13 28752068 28752068 1 + G T LUSC 28752059 + 28752039 28752079 41 CTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGGTG CTTTGGTGCCCTCAACATCTCTCAGAGACTAAAGGTAGGTG < 41bp 1 0.47368409519063 1 0.117829352617264 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752059 chr13:28752068 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_30107 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 5bp
chr13 28752068 28752068 1 + G T LUSC 28752061 + 28752041 28752081 41 TTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGGTGAA TTGGTGCCCTCAACATCTCTCAGAGACTAAAGGTAGGTGAA < 41bp 1 0.441966755753525 1 0.694764614105225 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752061 chr13:28752068 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_30108 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 67bp
chr13 28752068 28752068 1 + G T LUSC 28752061 + 28752041 28752081 41 TTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGGTGAA TTGGTGCCCTCAACATCTCTCAGAGACTAAAGGTAGGTGAA < 41bp 1 0.441966755753525 1 0.694764614105225 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752061 chr13:28752068 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_30108 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 5bp
chr6 25652645 25652645 1 + G A LUSC 25652637 + 25652617 25652657 41 TTCGTCGTCAACACCATGGACAGCTCCCGGGAACCGACTCT TTCGTCGTCAACACCATGGACAGCTCCCAGGAACCGACTCT < 41bp 1 0.397652694982442 1 0.345628350973129 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCGN ENSG00000079689 CDS Human protein_coding chr6:25652637 chr6:25652645 nonsynonymous SNV 0.116 2 29 hm5C_associated_SNPs_30109 0 0 0 0 1 SCGN chr6:25652713 5'GT 25652713 Upstream 69bp
chr11 57373944 57373944 1 + C G LUSC 57373925 + 57373905 57373945 41 CCAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA CCAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTGA < 41bp 1 0.0218494428089141 1 0.0596957802772522 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373925 chr11:57373944 stopgain 0.084 1 40 hm5C_associated_SNPs_30110 0 0 0 0 2 SERPING1 chr11:57373881 3'AG 57373881 Downstream 64bp
chr11 57373944 57373944 1 + C G LUSC 57373925 + 57373905 57373945 41 CCAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA CCAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTGA < 41bp 1 0.0218494428089141 1 0.0596957802772522 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373925 chr11:57373944 stopgain 0.084 1 40 hm5C_associated_SNPs_30110 0 0 0 0 2 SERPING1 chr11:57374020 5'GT 57374020 Upstream 77bp
chr11 57373944 57373944 1 + C G LUSC 57373926 + 57373906 57373946 41 CAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAG CAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTGAG < 41bp 1 0.00969193377576405 1 0.105742216110229 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373926 chr11:57373944 stopgain 0.084 1 39 hm5C_associated_SNPs_30111 0 0 0 0 2 SERPING1 chr11:57373881 3'AG 57373881 Downstream 64bp
chr11 57373944 57373944 1 + C G LUSC 57373926 + 57373906 57373946 41 CAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAG CAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTGAG < 41bp 1 0.00969193377576405 1 0.105742216110229 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373926 chr11:57373944 stopgain 0.084 1 39 hm5C_associated_SNPs_30111 0 0 0 0 2 SERPING1 chr11:57374020 5'GT 57374020 Upstream 77bp
chr11 57373944 57373944 1 + C G LUSC 57373927 + 57373907 57373947 41 AAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAGT AAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTGAGT < 41bp 1 0.014362216773692 1 0.0618423819541931 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373927 chr11:57373944 stopgain 0.084 1 38 hm5C_associated_SNPs_30112 0 0 0 0 2 SERPING1 chr11:57373881 3'AG 57373881 Downstream 64bp
chr11 57373944 57373944 1 + C G LUSC 57373927 + 57373907 57373947 41 AAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAGT AAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTGAGT < 41bp 1 0.014362216773692 1 0.0618423819541931 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373927 chr11:57373944 stopgain 0.084 1 38 hm5C_associated_SNPs_30112 0 0 0 0 2 SERPING1 chr11:57374020 5'GT 57374020 Upstream 77bp
chr11 57373944 57373944 1 + C G LUSC 57373933 + 57373913 57373953 41 ACCAGAATGGAACCCTTTCACTTCAAAAACTCAGTTATAAA ACCAGAATGGAACCCTTTCACTTCAAAAACTGAGTTATAAA < 41bp 1 0.514132660773494 1 0.363282918930054 experiment 0.971734678453013 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373933 chr11:57373944 stopgain 0.084 1 32 hm5C_associated_SNPs_30113 0 0 0 0 2 SERPING1 chr11:57373881 3'AG 57373881 Downstream 64bp
chr11 57373944 57373944 1 + C G LUSC 57373933 + 57373913 57373953 41 ACCAGAATGGAACCCTTTCACTTCAAAAACTCAGTTATAAA ACCAGAATGGAACCCTTTCACTTCAAAAACTGAGTTATAAA < 41bp 1 0.514132660773494 1 0.363282918930054 experiment 0.971734678453013 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373933 chr11:57373944 stopgain 0.084 1 32 hm5C_associated_SNPs_30113 0 0 0 0 2 SERPING1 chr11:57374020 5'GT 57374020 Upstream 77bp
chr22 51143493 51143493 1 + G T LUSC 51143513 + 51143493 51143533 41 GAAGCCAGAAGAGGACGGGGCTCGGCGCAGAGGTGAGGGGT TAAGCCAGAAGAGGACGGGGCTCGGCGCAGAGGTGAGGGGT < 41bp 1 0.272800669321574 1 0.713770389556885 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51143513 chr22:51143493 nonsynonymous SNV . 0 1 hm5C_associated_SNPs_30114 0 0 1 0 1 SHANK3 chr22:51143524 5'GT 51143524 Upstream 32bp
chr12 52379132 52379132 1 + G T LUSC 52379127 + 52379107 52379147 41 CCGAATCAGAGGGTGGGGACCAAACGGTAGGAGGGCCTGGG CCGAATCAGAGGGTGGGGACCAAACTGTAGGAGGGCCTGGG < 41bp 1 0.246528429300564 1 0.379218012094498 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52379127 chr12:52379132 nonsynonymous SNV 0.996 4 26 hm5C_associated_SNPs_30115 0 0 1 0 1 ACVR1B chr12:52379132 5'GT 52379132 Upstream 1bp
chr14 23239049 23239049 1 + G C LUSC 23239030 + 23239010 23239050 41 TGCCCGCTGCCTGATTTTTCCTCTCATCGTGACGGGCCAGC TGCCCGCTGCCTGATTTTTCCTCTCATCGTGACGGGCCACC < 41bp 1 0.297524261994005 1 0.0249118804931641 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXA1L ENSG00000155463 CDS Human protein_coding chr14:23239030 chr14:23239049 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_30116 0 0 1 0 1 OXA1L chr14:23239000 3'AG 23239000 Downstream 50bp
chr8 133856422 133856422 1 + G A LUSC 133856405 + 133856385 133856425 41 TGGTCCTTTGGAGAAGAATCCAGCTGAAGGGAATACAGTAT TGGTCCTTTGGAGAAGAATCCAGCTGAAGGGAATACAATAT < 41bp 1 0.374809572016638 1 0.370831727981567 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133856405 chr8:133856422 nonsynonymous SNV 0.853 1 38 hm5C_associated_SNPs_30124 0 0 0 0 1 PHF20L1 chr8:133856401 3'AG 133856401 Downstream 22bp
chrX 47101575 47101575 1 + G T LUSC 47101578 + 47101558 47101598 41 CAAGTCCACGCTGGTGTGCCCCGATTGTGGCAATGTATCTG CAAGTCCACGCTGGTGTTCCCCGATTGTGGCAATGTATCTG < 41bp 1 0.196858524106626 1 0.158724397420883 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47101578 chrX:47101575 nonsynonymous SNV 0.979 4 18 hm5C_associated_SNPs_30125 0 0 1 0 1 USP11 chrX:47101481 3'AG 47101481 Downstream 95bp
chr16 68390996 68390996 1 + T A LUSC 68390977 + 68390957 68390997 41 GGGGGCTGCTGCTGGAACCCCCACTGCAAGCAGGCCGTCTA GGGGGCTGCTGCTGGAACCCCCACTGCAAGCAGGCCGTCAA < 41bp 1 0.222707480550984 1 0.404758721590042 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68390977 chr16:68390996 nonsynonymous SNV 0.983 4 40 hm5C_associated_SNPs_30126 0 0 1 0 1 PRMT7 chr16:68390957 3'AG 68390957 Downstream 40bp
chr16 68390996 68390996 1 + T A LUSC 68391008 + 68390988 68391028 41 AGGCCGTCTACTTCTTCAGCCCTGCCCCAGATCCCAGAGCA AGGCCGTCAACTTCTTCAGCCCTGCCCCAGATCCCAGAGCA < 41bp 1 0.069617018036553 1 0.0770450532436371 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68391008 chr16:68390996 nonsynonymous SNV 0.983 4 9 hm5C_associated_SNPs_30127 0 0 1 0 1 PRMT7 chr16:68390957 3'AG 68390957 Downstream 40bp
chr17 28499605 28499605 1 + G T LUSC 28499607 + 28499587 28499627 41 GAAGCTGCTAAGAAGCAGGCCATGAAACAGGTAAGGTAGAA GAAGCTGCTAAGAAGCAGTCCATGAAACAGGTAAGGTAGAA < 41bp 1 0.547199383721512 1 0.0973784923553467 experiment 0.905601232556975 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NSRP1 ENSG00000126653 CDS Human protein_coding chr17:28499607 chr17:28499605 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_30128 0 0 1 0 2 NSRP1 chr17:28499560 3'AG 28499560 Downstream 46bp
chr17 28499605 28499605 1 + G T LUSC 28499607 + 28499587 28499627 41 GAAGCTGCTAAGAAGCAGGCCATGAAACAGGTAAGGTAGAA GAAGCTGCTAAGAAGCAGTCCATGAAACAGGTAAGGTAGAA < 41bp 1 0.547199383721512 1 0.0973784923553467 experiment 0.905601232556975 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NSRP1 ENSG00000126653 CDS Human protein_coding chr17:28499607 chr17:28499605 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_30128 0 0 1 0 2 NSRP1 chr17:28499616 5'GT 28499616 Upstream 12bp
chr14 23778052 23778052 1 + G T LUSC 23778051 + 23778031 23778071 41 TTCACAGCTCTATACGGGGACGGGGCCCTGGAGGAGGCGCG TTCACAGCTCTATACGGGGACTGGGCCCTGGAGGAGGCGCG < 41bp 1 0.583641789657754 1 0.14218533039093 experiment 0.832716420684493 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCL2L2 ENSG00000129473 CDS Human protein_coding chr14:23778051 chr14:23778052 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_30129 0 0 1 0 1 BCL2L2 chr14:23778025 3'AG 23778025 Downstream 28bp
chr14 64445678 64445678 1 + G T LUSC 64445696 + 64445676 64445716 41 TGGAACATTAAATATGGGAGCAGAGAATCTGTGGAATTATT TGTAACATTAAATATGGGAGCAGAGAATCTGTGGAATTATT < 41bp 1 0.0855254400248518 1 0.495707511901855 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64445696 chr14:64445678 nonsynonymous SNV 0.996 5 3 hm5C_associated_SNPs_30130 0 0 0 0 1 SYNE2 chr14:64445732 5'GT 64445732 Upstream 55bp
chr5 122154695 122154695 1 + A G LUSC 122154694 + 122154674 122154714 41 TCAGAACTACTTAGTGACTACATTCGTCTTATTGCTGCAGT TCAGAACTACTTAGTGACTACGTTCGTCTTATTGCTGCAGT < 41bp 1 0.0596901013030074 1 0.0614858269691467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNX2 ENSG00000205302 CDS Human protein_coding chr5:122154694 chr5:122154695 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_30132 0 0 1 0 1 SNX2 chr5:122154718 5'GT 122154718 Upstream 24bp
chr7 76110003 76110003 1 + G T LUSC 76110000 + 76109980 76110020 41 CAACGTTTTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTT CAACGTTTTGGGCTTGGGAGCCTTGCCCACAGCATCCCCTT < 41bp 1 0.0440705508695325 1 0.0131611227989197 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110000 chr7:76110003 synonymous SNV . 0 24 hm5C_associated_SNPs_30133 0 0 0 0 1 DTX2 chr7:76110094 5'GT 76110094 Upstream 92bp
chr7 76110003 76110003 1 + G T LUSC 76110001 + 76109981 76110021 41 AACGTTTTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTTG AACGTTTTGGGCTTGGGAGCCTTGCCCACAGCATCCCCTTG < 41bp 1 0.184093576632643 1 0.118084967136383 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110001 chr7:76110003 synonymous SNV . 0 23 hm5C_associated_SNPs_30134 0 0 0 0 1 DTX2 chr7:76110094 5'GT 76110094 Upstream 92bp
chr7 76110003 76110003 1 + G T LUSC 76110005 + 76109985 76110025 41 TTTTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTTGGGCC TTTTGGGCTTGGGAGCCTTGCCCACAGCATCCCCTTGGGCC < 41bp 1 0.128750292354441 1 0.095976710319519 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110005 chr7:76110003 synonymous SNV . 0 19 hm5C_associated_SNPs_30135 0 0 0 0 1 DTX2 chr7:76110094 5'GT 76110094 Upstream 92bp
chr7 76110003 76110003 1 + G T LUSC 76110006 + 76109986 76110026 41 TTTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTTGGGCCA TTTGGGCTTGGGAGCCTTGCCCACAGCATCCCCTTGGGCCA < 41bp 1 0.580698341146371 1 0.554439306259155 experiment 0.838603317707258 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110006 chr7:76110003 synonymous SNV . 0 18 hm5C_associated_SNPs_30136 0 0 0 0 1 DTX2 chr7:76110094 5'GT 76110094 Upstream 92bp
chr7 76110003 76110003 1 + G T LUSC 76110007 + 76109987 76110027 41 TTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTTGGGCCAG TTGGGCTTGGGAGCCTTGCCCACAGCATCCCCTTGGGCCAG < 41bp 1 0.587474144021798 1 0.656753659248352 experiment 0.825051711956403 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110007 chr7:76110003 synonymous SNV . 0 17 hm5C_associated_SNPs_30137 0 0 0 0 1 DTX2 chr7:76110094 5'GT 76110094 Upstream 92bp
chr16 845779 845779 1 + T C LUSC 845778 + 845758 845798 41 GCCGGGCCACGCCCCAGGCCCTGCTCCTCGATGCCCTCTGC GCCGGGCCACGCCCCAGGCCCCGCTCCTCGATGCCCTCTGC < 41bp 1 0.200845013837425 1 0.107569813728333 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845778 chr16:845779 nonsynonymous SNV 0.013 4 22 hm5C_associated_SNPs_30139 0 0 1 0 2 CHTF18 chr16:845685 3'AG 845685 Downstream 95bp
chr16 845779 845779 1 + T C LUSC 845778 + 845758 845798 41 GCCGGGCCACGCCCCAGGCCCTGCTCCTCGATGCCCTCTGC GCCGGGCCACGCCCCAGGCCCCGCTCCTCGATGCCCTCTGC < 41bp 1 0.200845013837425 1 0.107569813728333 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845778 chr16:845779 nonsynonymous SNV 0.013 4 22 hm5C_associated_SNPs_30139 0 0 1 0 2 CHTF18 chr16:845834 5'GT 845834 Upstream 56bp
chr7 106768716 106768716 1 + C A LUSC 106768707 + 106768687 106768727 41 AATAGGTTGCAAGAGGCTTGCAAAGACATCCTGCTGTTTAA AATAGGTTGCAAGAGGCTTGCAAAGACATACTGCTGTTTAA < 41bp 1 0.482717831020411 1 0.61196106672287 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106768707 chr7:106768716 synonymous SNV . 0 30 hm5C_associated_SNPs_30140 0 0 1 0 2 PRKAR2B chr7:106768657 3'AG 106768657 Downstream 60bp
chr7 106768716 106768716 1 + C A LUSC 106768707 + 106768687 106768727 41 AATAGGTTGCAAGAGGCTTGCAAAGACATCCTGCTGTTTAA AATAGGTTGCAAGAGGCTTGCAAAGACATACTGCTGTTTAA < 41bp 1 0.482717831020411 1 0.61196106672287 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106768707 chr7:106768716 synonymous SNV . 0 30 hm5C_associated_SNPs_30140 0 0 1 0 2 PRKAR2B chr7:106768740 5'GT 106768740 Upstream 25bp
chr18 33289685 33289685 1 + G A LUSC 33289684 + 33289664 33289704 41 TTAGAGACTGCAATGGAAGTCGGTCCCAGCAGTGGCTTCTT TTAGAGACTGCAATGGAAGTCAGTCCCAGCAGTGGCTTCTT < 41bp 1 0.372543505597446 1 0.346643209457397 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT1 ENSG00000141429 CDS Human protein_coding chr18:33289684 chr18:33289685 nonsynonymous SNV 0.993 1 22 hm5C_associated_SNPs_30141 0 0 1 0 1 GALNT1 chr18:33289588 3'AG 33289588 Downstream 98bp
chr3 127323794 127323794 1 + G A LUSC 127323809 + 127323789 127323829 41 GAGCGGGCCACGGAGGACGGCGAGGAGGACGAGGAGATGAT GAGCGAGCCACGGAGGACGGCGAGGAGGACGAGGAGATGAT < 41bp 1 0.660925362373379 1 0.614526689052582 experiment 0.678149275253243 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127323809 chr3:127323794 synonymous SNV . 0 6 hm5C_associated_SNPs_30143 0 0 1 0 2 MCM2 chr3:127323720 3'AG 127323720 Downstream 75bp
chr3 127323794 127323794 1 + G A LUSC 127323809 + 127323789 127323829 41 GAGCGGGCCACGGAGGACGGCGAGGAGGACGAGGAGATGAT GAGCGAGCCACGGAGGACGGCGAGGAGGACGAGGAGATGAT < 41bp 1 0.660925362373379 1 0.614526689052582 experiment 0.678149275253243 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127323809 chr3:127323794 synonymous SNV . 0 6 hm5C_associated_SNPs_30143 0 0 1 0 2 MCM2 chr3:127323739 3'AG 127323739 Downstream 56bp
chr18 34289080 34289080 1 + C T LUSC 34289065 + 34289045 34289085 41 TTGTCTCCACCAGCAAGTGCCGGGGATCCTGAACCCGAATC TTGTCTCCACCAGCAAGTGCCGGGGATCCTGAACCTGAATC < 41bp 1 0.546903962824887 1 0.80107307434082 experiment 0.906192074350226 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34289065 chr18:34289080 synonymous SNV . 0 36 hm5C_associated_SNPs_30144 0 0 0 0 1 FHOD3 chr18:34289058 3'AG 34289058 Downstream 23bp
chr20 37154652 37154652 1 + G T LUSC 37154672 + 37154652 37154692 41 GAAACGGACCCCAACAACACCCAAATGATATTAGGTTTGTA TAAACGGACCCCAACAACACCCAAATGATATTAGGTTTGTA < 41bp 1 0.0778488787035886 1 0.231358081102371 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37154672 chr20:37154652 stopgain 0.990 1 1 hm5C_associated_SNPs_30151 0 0 1 0 1 RALGAPB chr20:37154685 5'GT 37154685 Upstream 34bp
chr10 94822674 94822674 1 + G A LUSC 94822661 + 94822641 94822681 41 GGGGTTGCGGCTGGACGAGGCGCAGTGCGCCACGCTGGCCC GGGGTTGCGGCTGGACGAGGCGCAGTGCGCCACACTGGCCC < 41bp 1 0.704260962670026 1 0.438016831874847 experiment 0.591478074659949 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94822661 chr10:94822674 synonymous SNV . 0 34 hm5C_associated_SNPs_30152 0 0 0 0 1 CYP26C1 chr10:94822752 5'GT 94822752 Upstream 79bp
chr10 94822674 94822674 1 + G A LUSC 94822663 + 94822643 94822683 41 GGTTGCGGCTGGACGAGGCGCAGTGCGCCACGCTGGCCCGG GGTTGCGGCTGGACGAGGCGCAGTGCGCCACACTGGCCCGG < 41bp 1 0.698542686502018 1 0.507414162158966 experiment 0.602914626995964 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94822663 chr10:94822674 synonymous SNV . 0 32 hm5C_associated_SNPs_30153 0 0 0 0 1 CYP26C1 chr10:94822752 5'GT 94822752 Upstream 79bp
chr2 71795349 71795349 1 + G C LUSC 71795352 + 71795332 71795372 41 GGGAACTGGGGCACAACGGGCCTCACCTACCCCAAGTTTTC GGGAACTGGGGCACAACCGGCCTCACCTACCCCAAGTTTTC < 41bp 1 0.11038335641653 1 0.0706162750720978 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71795352 chr2:71795349 synonymous SNV . 0 18 hm5C_associated_SNPs_30154 0 0 0 0 1 DYSF chr2:71795302 3'AG 71795302 Downstream 48bp
chr3 183885468 183885468 1 + G T LUSC 183885453 + 183885433 183885473 41 CCTGAATCAGGGTTGGAGGTCCGTGACCGCATGTGGCTCAA CCTGAATCAGGGTTGGAGGTCCGTGACCGCATGTGTCTCAA < 41bp 1 0.249596400164568 1 0.183283507823944 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DVL3 ENSG00000161202 CDS Human protein_coding chr3:183885453 chr3:183885468 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_30155 0 0 1 0 1 DVL3 chr3:183885499 5'GT 183885499 Upstream 32bp
chr2 233671354 233671354 1 + C T LUSC 233671347 + 233671327 233671367 41 GGGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATG GGGTTCCCTTTTCTCCAGGTCCAGCTCTCCCTCCTCATATG < 41bp 1 0.11822191384846 1 0.0260702669620514 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671347 chr2:233671354 nonsynonymous SNV 0.979 3 28 hm5C_associated_SNPs_30156 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 14bp
chr2 233671354 233671354 1 + C T LUSC 233671348 + 233671328 233671368 41 GGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGG GGTTCCCTTTTCTCCAGGTCCAGCTCTCCCTCCTCATATGG < 41bp 1 0.231755512287355 1 0.0712853074073792 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671348 chr2:233671354 nonsynonymous SNV 0.979 3 27 hm5C_associated_SNPs_30157 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 14bp
chr2 233671354 233671354 1 + C T LUSC 233671351 + 233671331 233671371 41 TCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAA TCCCTTTTCTCCAGGTCCAGCTCTCCCTCCTCATATGGTAA < 41bp 1 0.0393905500503518 1 0.258984923362732 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671351 chr2:233671354 nonsynonymous SNV 0.979 3 24 hm5C_associated_SNPs_30158 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 14bp
chr2 233671354 233671354 1 + C T LUSC 233671355 + 233671335 233671375 41 TTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTAC TTTTCTCCAGGTCCAGCTCTCCCTCCTCATATGGTAAGTAC < 41bp 1 0.0683252152448919 1 0.102609604597092 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671355 chr2:233671354 nonsynonymous SNV 0.979 3 20 hm5C_associated_SNPs_30159 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 14bp
chr2 233671354 233671354 1 + C T LUSC 233671356 + 233671336 233671376 41 TTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTACC TTTCTCCAGGTCCAGCTCTCCCTCCTCATATGGTAAGTACC < 41bp 1 0.0236253508084036 1 0.0485194325447083 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671356 chr2:233671354 nonsynonymous SNV 0.979 3 19 hm5C_associated_SNPs_30160 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 14bp
chr2 233671354 233671354 1 + C T LUSC 233671357 + 233671337 233671377 41 TTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTACCT TTCTCCAGGTCCAGCTCTCCCTCCTCATATGGTAAGTACCT < 41bp 1 0.300746118213707 1 0.06482794880867 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671357 chr2:233671354 nonsynonymous SNV 0.979 3 18 hm5C_associated_SNPs_30161 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 14bp
chr1 228468283 228468283 1 + C T LUSC 228468289 + 228468269 228468309 41 TCCGCAGAGGAGCGCGGCACCCTGGCCCTGCAGTGTGAAGT TCCGCAGAGGAGCGTGGCACCCTGGCCCTGCAGTGTGAAGT < 41bp 1 0.051300910775221 1 0.0800199210643768 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228468289 chr1:228468283 synonymous SNV . 0 15 hm5C_associated_SNPs_30162 0 0 0 0 1 OBSCN chr1:228468231 3'AG 228468231 Downstream 53bp
chr1 7845624 7845624 1 + C G LUSC 7845627 + 7845607 7845647 41 GCCCTCAACTATGCTCTCCGCTGTGTCCACAGCGTTCAAGG GCCCTCAACTATGCTCTGCGCTGTGTCCACAGCGTTCAAGG < 41bp 1 0.355733812135753 1 0.0439698100090027 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PER3 ENSG00000049246 CDS Human protein_coding chr1:7845627 chr1:7845624 synonymous SNV . 0 18 hm5C_associated_SNPs_30163 0 0 0 0 1 PER3 chr1:7845646 5'GT 7845646 Upstream 23bp
chr16 22237271 22237271 1 + C G LUSC 22237252 + 22237232 22237272 41 GCAACCTAACAAAAAGTGAGCGGTATAGCTCCAGCGGGTCC GCAACCTAACAAAAAGTGAGCGGTATAGCTCCAGCGGGTGC < 41bp 1 0.415723457973727 1 0.566274106502533 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EEF2K ENSG00000103319 CDS Human protein_coding chr16:22237252 chr16:22237271 nonsynonymous SNV 0.807 3 40 hm5C_associated_SNPs_30164 0 0 1 0 1 EEF2K chr16:22237296 5'GT 22237296 Upstream 26bp
chr18 74620347 74620347 1 + A T LUSC 74620335 + 74620315 74620355 41 AGCCTCGATAGATGACAGCACTGTAGACCAGCAGAGCATGC AGCCTCGATAGATGACAGCACTGTAGACCAGCTGAGCATGC < 41bp 1 0.479282302264594 1 0.170702040195465 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74620335 chr18:74620347 nonsynonymous SNV 0.788 1 33 hm5C_associated_SNPs_30167 0 0 1 0 1 ZNF236 chr18:74620276 3'AG 74620276 Downstream 72bp
chr7 2686580 2686580 1 + C T LUSC 2686570 + 2686550 2686590 41 TTCTACTCCTTCTGGCTGTGCTGCCGGCGGCGCAAGAGCGA TTCTACTCCTTCTGGCTGTGCTGCCGGCGGTGCAAGAGCGA < 41bp 1 0.316976058908601 1 0.37427169084549 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686570 chr7:2686580 nonsynonymous SNV 0.997 4 31 hm5C_associated_SNPs_30168 0 0 1 0 2 TTYH3 chr7:2686487 3'AG 2686487 Downstream 94bp
chr7 2686580 2686580 1 + C T LUSC 2686570 + 2686550 2686590 41 TTCTACTCCTTCTGGCTGTGCTGCCGGCGGCGCAAGAGCGA TTCTACTCCTTCTGGCTGTGCTGCCGGCGGTGCAAGAGCGA < 41bp 1 0.316976058908601 1 0.37427169084549 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686570 chr7:2686580 nonsynonymous SNV 0.997 4 31 hm5C_associated_SNPs_30168 0 0 1 0 2 TTYH3 chr7:2686656 5'GT 2686656 Upstream 77bp
chr10 17276803 17276803 1 + G T LUSC 17276805 + 17276785 17276825 41 CTCACCTGTGAAGTGGATGCCCTTAAAGGAACCGTGAGTAC CTCACCTGTGAAGTGGATTCCCTTAAAGGAACCGTGAGTAC < 41bp 1 0.159616233268652 1 0.0449380576610565 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276805 chr10:17276803 nonsynonymous SNV 0.988 2 19 hm5C_associated_SNPs_30169 0 0 1 0 1 VIM chr10:17276817 5'GT 17276817 Upstream 15bp
chr10 17276803 17276803 1 + G T LUSC 17276817 + 17276797 17276837 41 GTGGATGCCCTTAAAGGAACCGTGAGTACCAACCCTGCAGT GTGGATTCCCTTAAAGGAACCGTGAGTACCAACCCTGCAGT < 41bp 1 0.678022762051125 1 0.577186584472656 experiment 0.643954475897751 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276817 chr10:17276803 nonsynonymous SNV 0.988 2 7 hm5C_associated_SNPs_30170 0 0 1 0 1 VIM chr10:17276817 5'GT 17276817 Upstream 15bp
chr18 54362331 54362331 1 + G T LUSC 54362330 + 54362310 54362350 41 TGTACATACCAGCACATGGACGACTTGTTTGTGGTCGTGAA TGTACATACCAGCACATGGACTACTTGTTTGTGGTCGTGAA < 41bp 1 0.165866036303621 1 0.0638448894023895 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR7 ENSG00000091157 CDS Human protein_coding chr18:54362330 chr18:54362331 nonsynonymous SNV 0.975 4 22 hm5C_associated_SNPs_30171 0 0 0 0 1 WDR7 chr18:54362429 5'GT 54362429 Upstream 99bp
chr16 77232101 77232101 1 + A T LUSC 77232113 + 77232093 77232133 41 GGGTGAAGAAAGAGGAGGACCGGCTCTTCATTCGTTACCCA GGGTGAAGTAAGAGGAGGACCGGCTCTTCATTCGTTACCCA < 41bp 1 0.561447341927294 1 0.318897426128387 experiment 0.877105316145412 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MON1B ENSG00000103111 CDS Human protein_coding chr16:77232113 chr16:77232101 stopgain 1.000 1 9 hm5C_associated_SNPs_30172 0 0 1 0 1 MON1B chr16:77232005 3'AG 77232005 Downstream 97bp
chr7 150765122 150765122 1 + C G LUSC 150765104 + 150765084 150765124 41 CACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCG CACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTGCG < 41bp 1 0.536116653683616 1 0.371825397014618 experiment 0.927766692632768 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765104 chr7:150765122 synonymous SNV . 0 39 hm5C_associated_SNPs_30175 0 0 1 0 1 SLC4A2 chr7:150765141 5'GT 150765141 Upstream 20bp
chr7 150765122 150765122 1 + C G LUSC 150765105 + 150765085 150765125 41 ACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCGC ACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTGCGC < 41bp 1 0.522024379009194 1 0.575860559940338 experiment 0.955951241981612 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765105 chr7:150765122 synonymous SNV . 0 38 hm5C_associated_SNPs_30176 0 0 1 0 1 SLC4A2 chr7:150765141 5'GT 150765141 Upstream 20bp
chr15 78841227 78841227 1 + G A LUSC 78841245 + 78841225 78841265 41 AAGAAGAAGCCAAAGCTGAGCGTGAGAAGAAAGAAAAAGAA AAAAAGAAGCCAAAGCTGAGCGTGAGAAGAAAGAAAAAGAA < 41bp 1 0.677359362308309 1 0.454132884740829 experiment 0.645281275383383 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMA4 ENSG00000041357 CDS Human protein_coding chr15:78841245 chr15:78841227 nonsynonymous SNV 0.998 1 3 hm5C_associated_SNPs_30177 0 0 1 0 1 PSMA4 chr15:78841132 3'AG 78841132 Downstream 96bp
chr1 204957875 204957875 1 + G A LUSC 204957878 + 204957858 204957898 41 CTTTACCCTCAGCGCCAGGACGCAGGTGGGCTCTGGGGAAG CTTTACCCTCAGCGCCAAGACGCAGGTGGGCTCTGGGGAAG < 41bp 1 0.785906147476071 1 0.694392383098602 experiment 0.428187705047858 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NFASC ENSG00000163531 CDS Human protein_coding chr1:204957878 chr1:204957875 nonsynonymous SNV 1.000 0 18 hm5C_associated_SNPs_30181 0 0 0 0 1 NFASC chr1:204957934 5'GT 204957934 Upstream 60bp
chr5 115628151 115628151 1 + G A LUSC 115628155 + 115628135 115628175 41 TCTTTGTAAATAGCTAGAGACTATACAAGCACAGCTGGATT TCTTTGTAAATAGCTAAAGACTATACAAGCACAGCTGGATT < 41bp 1 0.360329913038252 1 0.377773433923721 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COMMD10 ENSG00000145781 CDS Human protein_coding chr5:115628155 chr5:115628151 nonsynonymous SNV 0.996 2 17 hm5C_associated_SNPs_30182 0 0 0 0 1 COMMD10 chr5:115628148 3'AG 115628148 Downstream 4bp
chr5 176710800 176710800 1 + G A LUSC 176710791 + 176710771 176710811 41 TTCTTTTGGAATTCTAGGACCGAATCATTGATGCTGGTCCC TTCTTTTGGAATTCTAGGACCGAATCATTAATGCTGGTCCC < 41bp 1 0.0819231705079771 1 0.194554090499878 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176710791 chr5:176710800 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_30183 0 0 1 0 1 NSD1 chr5:176710788 3'AG 176710788 Downstream 13bp
chr19 10561289 10561289 1 + C T LUSC 10561299 + 10561279 10561319 41 GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA GCGGTCCCCGTTGGGCGGCCCCACCCCTGTCTGCAAGGCCA < 41bp 1 0.0384841693062586 1 0.135537773370743 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561299 chr19:10561289 synonymous SNV . 0 11 hm5C_associated_SNPs_30188 0 0 0 0 2 PDE4A chr19:10561279 3'AG 10561279 Downstream 11bp
chr19 10561289 10561289 1 + C T LUSC 10561299 + 10561279 10561319 41 GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA GCGGTCCCCGTTGGGCGGCCCCACCCCTGTCTGCAAGGCCA < 41bp 1 0.0384841693062586 1 0.135537773370743 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561299 chr19:10561289 synonymous SNV . 0 11 hm5C_associated_SNPs_30188 0 0 0 0 2 PDE4A chr19:10561328 5'GT 10561328 Upstream 40bp
chr2 197541356 197541356 1 + G A LUSC 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTGTGCAAAAAGAACTGCTAGAATCAACTATTGCA < 41bp 1 0.321360802216735 1 0.0727238655090332 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541356 synonymous SNV . 0 20 hm5C_associated_SNPs_30189 0 0 1 7 2 CCDC150 chr2:197541278 3'AG 197541278 Downstream 79bp
chr2 197541356 197541356 1 + G A LUSC 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTGTGCAAAAAGAACTGCTAGAATCAACTATTGCA < 41bp 1 0.321360802216735 1 0.0727238655090332 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541356 synonymous SNV . 0 20 hm5C_associated_SNPs_30189 0 0 1 7 2 CCDC150 chr2:197541455 5'GT 197541455 Upstream 100bp
chrX 152959701 152959701 1 + C G LUSC 152959707 + 152959687 152959727 41 CTCTGCTTTGTCATCGATCTCTCCATGGTGACTGATGTGAG CTCTGCTTTGTCATGGATCTCTCCATGGTGACTGATGTGAG < 41bp 1 0.764390920142103 1 0.949604511260986 experiment 0.471218159715794 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959707 chrX:152959701 nonsynonymous SNV 0.998 0 15 hm5C_associated_SNPs_30190 0 0 1 4 1 SLC6A8 chrX:152959722 5'GT 152959722 Upstream 22bp
chrX 152959701 152959701 1 + C G LUSC 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG CATGGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG < 41bp 1 0.323003322478042 1 0.0906555950641632 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959701 nonsynonymous SNV 0.998 0 4 hm5C_associated_SNPs_30191 0 0 1 4 1 SLC6A8 chrX:152959722 5'GT 152959722 Upstream 22bp
chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 2 CCM2 chr7:45112325 3'AG 45112325 Downstream 45bp
chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 2 CCM2 chr7:45112382 5'GT 45112382 Upstream 14bp
chr1 45267581 45267581 1 + G A LUSC 45267571 + 45267551 45267591 41 GGTGGGGGATTTTGGGCTGGCAGCCCGGTTGGAGCCTCCGG GGTGGGGGATTTTGGGCTGGCAGCCCGGTTAGAGCCTCCGG < 41bp 1 0.429386158792971 1 0.199971526861191 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267571 chr1:45267581 synonymous SNV . 0 31 hm5C_associated_SNPs_30194 0 0 1 0 2 PLK3 chr1:45267517 3'AG 45267517 Downstream 65bp
chr1 45267581 45267581 1 + G A LUSC 45267571 + 45267551 45267591 41 GGTGGGGGATTTTGGGCTGGCAGCCCGGTTGGAGCCTCCGG GGTGGGGGATTTTGGGCTGGCAGCCCGGTTAGAGCCTCCGG < 41bp 1 0.429386158792971 1 0.199971526861191 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267571 chr1:45267581 synonymous SNV . 0 31 hm5C_associated_SNPs_30194 0 0 1 0 2 PLK3 chr1:45267604 5'GT 45267604 Upstream 24bp
chr7 12269405 12269405 1 + T A LUSC 12269401 + 12269381 12269421 41 AAACAGTTATTGGAAAGGCACGCTTAAACAACATAACCATT AAACAGTTATTGGAAAGGCACGCTAAAACAACATAACCATT < 41bp 1 0.499539935934763 1 0.0981483459472656 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM106B ENSG00000106460 CDS Human protein_coding chr7:12269401 chr7:12269405 stopgain 1.000 0 25 hm5C_associated_SNPs_30199 0 0 1 0 1 TMEM106B chr7:12269445 5'GT 12269445 Upstream 41bp
chr2 158152278 158152278 1 + A G LUSC 158152276 + 158152256 158152296 41 GTAGAAAGAAAGTGGCCTGTCCAGTAATCGAAGTCATCAAT GTAGAAAGAAAGTGGCCTGTCCGGTAATCGAAGTCATCAAT < 41bp 1 0.361771648330644 1 0.243180513381958 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GALNT5 ENSG00000136542 CDS Human protein_coding chr2:158152276 chr2:158152278 synonymous SNV . 0 23 hm5C_associated_SNPs_30202 0 0 0 0 1 GALNT5 chr2:158152310 5'GT 158152310 Upstream 33bp
chr11 67202553 67202553 1 + G T LUSC 67202549 + 67202529 67202569 41 TCTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG TCTACCTCCACTCCTGCCACCGCCTCCGCCCTCGACCACCG < 41bp 1 0.584469245669447 1 0.217997342348099 experiment 0.831061508661105 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202549 chr11:67202553 synonymous SNV . 0 25 hm5C_associated_SNPs_30203 0 0 1 0 1 RPS6KB2 chr11:67202460 3'AG 67202460 Downstream 94bp
chr11 67202553 67202553 1 + G T LUSC 67202551 + 67202531 67202571 41 TACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCGCC TACCTCCACTCCTGCCACCGCCTCCGCCCTCGACCACCGCC < 41bp 1 0.108430017323332 1 0.148711353540421 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202551 chr11:67202553 synonymous SNV . 0 23 hm5C_associated_SNPs_30204 0 0 1 0 1 RPS6KB2 chr11:67202460 3'AG 67202460 Downstream 94bp
chr11 67202553 67202553 1 + G T LUSC 67202555 + 67202535 67202575 41 TCCACTCCTGCCACCGCCGCCGCCCTCGACCACCGCCCCTC TCCACTCCTGCCACCGCCTCCGCCCTCGACCACCGCCCCTC < 41bp 1 0.675463361569037 1 0.232030779123306 experiment 0.649073276861926 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202555 chr11:67202553 synonymous SNV . 0 19 hm5C_associated_SNPs_30205 0 0 1 0 1 RPS6KB2 chr11:67202460 3'AG 67202460 Downstream 94bp
chr10 12148367 12148367 1 + G T LUSC 12148373 + 12148353 12148393 41 TTCAATGGTGCCCAGATCATCTTTGACACATTCATCTCTGG TTCAATGGTGCCCATATCATCTTTGACACATTCATCTCTGG < 41bp 1 0.163446878174874 1 0.145819783210754 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12148373 chr10:12148367 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_30206 0 0 1 0 1 DHTKD1 chr10:12148395 5'GT 12148395 Upstream 29bp
chr2 37475350 37475350 1 + C A LUSC 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATATGTTAATGAATACAAAGAAGATGGGAGAGAGAT < 41bp 1 0.422185823570759 1 0.211309522390366 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475350 nonsynonymous SNV 0.998 2 20 hm5C_associated_SNPs_30207 0 0 1 2 1 NDUFAF7 chr2:37475278 3'AG 37475278 Downstream 73bp
chr7 142457345 142457345 1 + C T LUSC 142457347 + 142457327 142457367 41 TCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGC TCTACCACCATGAATCCATTCCTGATCCTTACCTTTGTGGC < 41bp 1 0.249141120458825 1 0.137003034353256 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457347 chr7:142457345 nonsynonymous SNV 0.422 1 19 hm5C_associated_SNPs_30208 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 31bp
chr7 142457345 142457345 1 + C T LUSC 142457348 + 142457328 142457368 41 CTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGCA CTACCACCATGAATCCATTCCTGATCCTTACCTTTGTGGCA < 41bp 1 0.157476444989319 1 0.202656239271164 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457348 chr7:142457345 nonsynonymous SNV 0.422 1 18 hm5C_associated_SNPs_30209 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 31bp
chr7 142457345 142457345 1 + C T LUSC 142457353 + 142457333 142457373 41 ACCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGC ACCATGAATCCATTCCTGATCCTTACCTTTGTGGCAGCTGC < 41bp 1 0.0640006045343751 1 0.0290971100330353 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457353 chr7:142457345 nonsynonymous SNV 0.422 1 13 hm5C_associated_SNPs_30210 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 31bp
chr7 142457345 142457345 1 + C T LUSC 142457354 + 142457334 142457374 41 CCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCT CCATGAATCCATTCCTGATCCTTACCTTTGTGGCAGCTGCT < 41bp 1 0.0381940355025835 1 0.134593099355698 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457354 chr7:142457345 nonsynonymous SNV 0.422 1 12 hm5C_associated_SNPs_30211 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 31bp
chr7 142457345 142457345 1 + C T LUSC 142457358 + 142457338 142457378 41 GAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTG GAATCCATTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTG < 41bp 1 0.045358624540437 1 0.0144142806529999 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457358 chr7:142457345 nonsynonymous SNV 0.422 1 8 hm5C_associated_SNPs_30212 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 31bp
chr7 142457345 142457345 1 + C T LUSC 142457359 + 142457339 142457379 41 AATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTGA AATCCATTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTGA < 41bp 1 0.154202209422149 1 0.13649919629097 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457359 chr7:142457345 nonsynonymous SNV 0.422 1 7 hm5C_associated_SNPs_30213 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 31bp
chr19 49619590 49619590 1 + A G LUSC 49619603 + 49619583 49619623 41 AAGACGGATGAGGGCCTAGGCTTCAACATCATGGGTGGCAA AAGACGGGTGAGGGCCTAGGCTTCAACATCATGGGTGGCAA < 41bp 1 0.701203910925948 1 0.704491794109344 experiment 0.597592178148104 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LIN7B ENSG00000104863 CDS Human protein_coding chr19:49619603 chr19:49619590 nonsynonymous SNV 0.986 1 8 hm5C_associated_SNPs_30214 0 0 0 0 1 LIN7B chr19:49619520 3'AG 49619520 Downstream 71bp
chr8 121259935 121259935 1 + C A LUSC 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTACGTGGGACCCCCCATCTTCCACGGTGAAAGGCTATA < 41bp 1 0.0820629485715653 1 0.18807578086853 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259935 nonsynonymous SNV 0.013 3 26 hm5C_associated_SNPs_30215 0 0 0 0 2 COL14A1 chr8:121259852 3'AG 121259852 Downstream 84bp
chr8 121259935 121259935 1 + C A LUSC 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTACGTGGGACCCCCCATCTTCCACGGTGAAAGGCTATA < 41bp 1 0.0820629485715653 1 0.18807578086853 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259935 nonsynonymous SNV 0.013 3 26 hm5C_associated_SNPs_30215 0 0 0 0 2 COL14A1 chr8:121259974 5'GT 121259974 Upstream 40bp
chr8 121259935 121259935 1 + C A LUSC 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGACCCCCCATCTTCCACGGTGAAAGGCTATAGAAT < 41bp 1 0.646163224646305 1 0.333568453788757 experiment 0.707673550707389 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259935 nonsynonymous SNV 0.013 3 22 hm5C_associated_SNPs_30216 0 0 0 0 2 COL14A1 chr8:121259852 3'AG 121259852 Downstream 84bp
chr8 121259935 121259935 1 + C A LUSC 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGACCCCCCATCTTCCACGGTGAAAGGCTATAGAAT < 41bp 1 0.646163224646305 1 0.333568453788757 experiment 0.707673550707389 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259935 nonsynonymous SNV 0.013 3 22 hm5C_associated_SNPs_30216 0 0 0 0 2 COL14A1 chr8:121259974 5'GT 121259974 Upstream 40bp
chr17 47904775 47904775 1 + G A LUSC 47904766 + 47904746 47904786 41 CCATTGTTCTCCCTCAGGACCTGATTGATGAGTGGATAGCC CCATTGTTCTCCCTCAGGACCTGATTGATAAGTGGATAGCC < 41bp 1 0.223482049138739 1 0.0248854756355286 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KAT7 ENSG00000136504 CDS Human protein_coding chr17:47904766 chr17:47904775 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_30218 0 0 1 0 1 KAT7 chr17:47904763 3'AG 47904763 Downstream 13bp
chr17 39974690 39974690 1 + G A LUSC 39974691 + 39974671 39974711 41 TCTGGTTGGCTGATCAAGGGCATGGACCAGGGGCTGCTGGG TCTGGTTGGCTGATCAAGGACATGGACCAGGGGCTGCTGGG < 41bp 1 0.425848278443043 1 0.142030119895935 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974691 chr17:39974690 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_30219 0 0 1 0 2 FKBP10 chr17:39974634 3'AG 39974634 Downstream 57bp
chr17 39974690 39974690 1 + G A LUSC 39974691 + 39974671 39974711 41 TCTGGTTGGCTGATCAAGGGCATGGACCAGGGGCTGCTGGG TCTGGTTGGCTGATCAAGGACATGGACCAGGGGCTGCTGGG < 41bp 1 0.425848278443043 1 0.142030119895935 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974691 chr17:39974690 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_30219 0 0 1 0 2 FKBP10 chr17:39974779 5'GT 39974779 Upstream 90bp
chr17 39974690 39974690 1 + G A LUSC 39974698 + 39974678 39974718 41 GGCTGATCAAGGGCATGGACCAGGGGCTGCTGGGCATGTGT GGCTGATCAAGGACATGGACCAGGGGCTGCTGGGCATGTGT < 41bp 1 0.612974657605577 1 0.887399792671204 experiment 0.774050684788847 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974698 chr17:39974690 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_30220 0 0 1 0 2 FKBP10 chr17:39974634 3'AG 39974634 Downstream 57bp
chr17 39974690 39974690 1 + G A LUSC 39974698 + 39974678 39974718 41 GGCTGATCAAGGGCATGGACCAGGGGCTGCTGGGCATGTGT GGCTGATCAAGGACATGGACCAGGGGCTGCTGGGCATGTGT < 41bp 1 0.612974657605577 1 0.887399792671204 experiment 0.774050684788847 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974698 chr17:39974690 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_30220 0 0 1 0 2 FKBP10 chr17:39974779 5'GT 39974779 Upstream 90bp
chr17 39974690 39974690 1 + G A LUSC 39974704 + 39974684 39974724 41 TCAAGGGCATGGACCAGGGGCTGCTGGGCATGTGTCCTGGA TCAAGGACATGGACCAGGGGCTGCTGGGCATGTGTCCTGGA < 41bp 1 0.313143323954158 1 0.0371644496917725 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974704 chr17:39974690 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_30221 0 0 1 0 2 FKBP10 chr17:39974634 3'AG 39974634 Downstream 57bp
chr17 39974690 39974690 1 + G A LUSC 39974704 + 39974684 39974724 41 TCAAGGGCATGGACCAGGGGCTGCTGGGCATGTGTCCTGGA TCAAGGACATGGACCAGGGGCTGCTGGGCATGTGTCCTGGA < 41bp 1 0.313143323954158 1 0.0371644496917725 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974704 chr17:39974690 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_30221 0 0 1 0 2 FKBP10 chr17:39974779 5'GT 39974779 Upstream 90bp
chr12 6943117 6943117 1 + G A LUSC 6943099 + 6943079 6943119 41 TCCCTGGCAGATGTCCTTCTCCTGGAGGGTGTGACCTTGAC TCCCTGGCAGATGTCCTTCTCCTGGAGGGTGTGACCTTAAC < 41bp 1 0.245419102058999 1 0.821785926818848 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control P3H3 ENSG00000110811 CDS Human protein_coding chr12:6943099 chr12:6943117 synonymous SNV . 0 39 hm5C_associated_SNPs_30223 0 0 1 0 2 P3H3 chr12:6943089 3'AG 6943089 Downstream 29bp
chr12 6943117 6943117 1 + G A LUSC 6943099 + 6943079 6943119 41 TCCCTGGCAGATGTCCTTCTCCTGGAGGGTGTGACCTTGAC TCCCTGGCAGATGTCCTTCTCCTGGAGGGTGTGACCTTAAC < 41bp 1 0.245419102058999 1 0.821785926818848 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control P3H3 ENSG00000110811 CDS Human protein_coding chr12:6943099 chr12:6943117 synonymous SNV . 0 39 hm5C_associated_SNPs_30223 0 0 1 0 2 P3H3 chr12:6943213 5'GT 6943213 Upstream 97bp
chr7 56066709 56066709 1 + A G LUSC 56066725 + 56066705 56066745 41 ACTTATTCAGGAAATGGAATCCAGAATCATGATCCCACTGA ACTTGTTCAGGAAATGGAATCCAGAATCATGATCCCACTGA < 41bp 1 0.756312132720251 1 0.694422721862793 experiment 0.487375734559497 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NIPSNAP2 ENSG00000146729 CDS Human protein_coding chr7:56066725 chr7:56066709 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_30224 0 0 1 0 1 NIPSNAP2 chr7:56066701 3'AG 56066701 Downstream 9bp
chr16 53504316 53504316 1 + G T LUSC 53504331 + 53504311 53504351 41 TGGAGGGATAACATTCTTCCCTGTCCAAGTCAATGTTGGGG TGGAGTGATAACATTCTTCCCTGTCCAAGTCAATGTTGGGG < 41bp 1 0.101680130309165 1 0.34819757938385 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RBL2 ENSG00000103479 CDS Human protein_coding chr16:53504331 chr16:53504316 nonsynonymous SNV 0.999 4 6 hm5C_associated_SNPs_30226 0 0 1 0 1 RBL2 chr16:53504295 3'AG 53504295 Downstream 22bp
chr21 47842000 47842000 1 + G A LUSC 47842001 + 47841981 47842021 41 GTTTCAGCCGCTGCCGGAAGCCATGAAGGAGAAGGAAGTGC GTTTCAGCCGCTGCCGGAAACCATGAAGGAGAAGGAAGTGC < 41bp 1 0.0641335145056469 1 0.22693207859993 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47842001 chr21:47842000 nonsynonymous SNV 0.609 0 20 hm5C_associated_SNPs_30227 0 0 1 0 1 PCNT chr21:47842038 5'GT 47842038 Upstream 39bp
chr2 220290697 220290697 1 + G T LUSC 220290716 + 220290696 220290736 41 AGCATGAAGTGCTCTAAAGACAGAGACCCTCTGCCACCAGA ATCATGAAGTGCTCTAAAGACAGAGACCCTCTGCCACCAGA < 41bp 1 0.765772927165849 1 0.74033659696579 experiment 0.468454145668302 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control DES ENSG00000175084 CDS Human protein_coding chr2:220290716 chr2:220290697 nonsynonymous SNV 0.998 1 2 hm5C_associated_SNPs_30228 0 0 0 0 1 DES chr2:220290671 3'AG 220290671 Downstream 27bp
chr2 162242066 162242066 1 + A G LUSC 162242075 + 162242055 162242095 41 GGGTCACTTAAACAAGCCATCTATCCAGGTATTGCCTATAT GGGTCACTTAAGCAAGCCATCTATCCAGGTATTGCCTATAT < 41bp 1 0.119085135404211 1 0.246283859014511 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMD14 ENSG00000115233 CDS Human protein_coding chr2:162242075 chr2:162242066 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_30229 0 0 1 0 2 PSMD14 chr2:162241975 3'AG 162241975 Downstream 92bp
chr2 162242066 162242066 1 + A G LUSC 162242075 + 162242055 162242095 41 GGGTCACTTAAACAAGCCATCTATCCAGGTATTGCCTATAT GGGTCACTTAAGCAAGCCATCTATCCAGGTATTGCCTATAT < 41bp 1 0.119085135404211 1 0.246283859014511 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMD14 ENSG00000115233 CDS Human protein_coding chr2:162242075 chr2:162242066 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_30229 0 0 1 0 2 PSMD14 chr2:162242082 5'GT 162242082 Upstream 17bp
chr11 111835392 111835392 1 + C T LUSC 111835377 + 111835357 111835397 41 GATCTCCGGGATGGGGTGATCCTGGCATATCTCATCGAGAT GATCTCCGGGATGGGGTGATCCTGGCATATCTCATTGAGAT < 41bp 1 0.405059256122853 1 0.46609354019165 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111835377 chr11:111835392 synonymous SNV . 0 36 hm5C_associated_SNPs_30230 0 0 1 0 1 DIXDC1 chr11:111835402 5'GT 111835402 Upstream 11bp
chr11 67376945 67376945 1 + G T LUSC 67376960 + 67376940 67376980 41 TGAACGCAGACGAGGGGGAGCCGGGCACCTGCAAGGACCGG TGAACTCAGACGAGGGGGAGCCGGGCACCTGCAAGGACCGG < 41bp 1 0.456284496873354 1 0.737952530384064 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67376960 chr11:67376945 nonsynonymous SNV 0.935 3 6 hm5C_associated_SNPs_30231 0 0 1 0 1 NDUFV1 chr11:67376923 3'AG 67376923 Downstream 23bp
chr3 12571315 12571315 1 + G A LUSC 12571319 + 12571299 12571339 41 AAGGCTCTCTCCGCAGGCCTCTCAGTTGGAAGTCCCTGGCT AAGGCTCTCTCCGCAGACCTCTCAGTTGGAAGTCCCTGGCT < 41bp 1 0.733858236706858 1 0.783206343650818 experiment 0.532283526586283 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12571319 chr3:12571315 synonymous SNV . 0 17 hm5C_associated_SNPs_30232 0 0 1 0 2 TSEN2 chr3:12571261 3'AG 12571261 Downstream 55bp
chr3 12571315 12571315 1 + G A LUSC 12571319 + 12571299 12571339 41 AAGGCTCTCTCCGCAGGCCTCTCAGTTGGAAGTCCCTGGCT AAGGCTCTCTCCGCAGACCTCTCAGTTGGAAGTCCCTGGCT < 41bp 1 0.733858236706858 1 0.783206343650818 experiment 0.532283526586283 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12571319 chr3:12571315 synonymous SNV . 0 17 hm5C_associated_SNPs_30232 0 0 1 0 2 TSEN2 chr3:12571372 5'GT 12571372 Upstream 58bp
chr15 41862298 41862298 1 + G A LUSC 41862285 + 41862265 41862305 41 TGTGGTCCTTGGTGTGCTAACGGCCCTGGTGACGGCTGCTG TGTGGTCCTTGGTGTGCTAACGGCCCTGGTGACAGCTGCTG < 41bp 1 0.673404669616821 1 0.194691687822342 experiment 0.653190660766358 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41862285 chr15:41862298 synonymous SNV . 0 34 hm5C_associated_SNPs_30234 0 0 1 0 2 TYRO3 chr15:41862225 3'AG 41862225 Downstream 74bp
chr15 41862298 41862298 1 + G A LUSC 41862285 + 41862265 41862305 41 TGTGGTCCTTGGTGTGCTAACGGCCCTGGTGACGGCTGCTG TGTGGTCCTTGGTGTGCTAACGGCCCTGGTGACAGCTGCTG < 41bp 1 0.673404669616821 1 0.194691687822342 experiment 0.653190660766358 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41862285 chr15:41862298 synonymous SNV . 0 34 hm5C_associated_SNPs_30234 0 0 1 0 2 TYRO3 chr15:41862354 5'GT 41862354 Upstream 57bp
chr14 102445718 102445718 1 + G A LUSC 102445731 + 102445711 102445751 41 CAGCTCCGGGTCCTTACACTCAGTGAAGACTCGCCCTACGA CAGCTCCAGGTCCTTACACTCAGTGAAGACTCGCCCTACGA < 41bp 1 0.204531727203917 1 0.73996639251709 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102445731 chr14:102445718 nonsynonymous SNV 0.992 1 8 hm5C_associated_SNPs_30235 0 0 1 0 1 DYNC1H1 chr14:102445656 3'AG 102445656 Downstream 63bp
chr5 149751742 149751742 1 + G A LUSC 149751738 + 149751718 149751758 41 CAAGAAGCCAGAAGAGGAGTCAGAGAGTAGTGAGGAGGGAT CAAGAAGCCAGAAGAGGAGTCAGAAAGTAGTGAGGAGGGAT < 41bp 1 0.428491377614255 1 0.60915207862854 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149751738 chr5:149751742 synonymous SNV . 0 25 hm5C_associated_SNPs_30236 0 0 1 0 1 TCOF1 chr5:149751799 5'GT 149751799 Upstream 58bp
chr5 149751742 149751742 1 + G A LUSC 149751759 + 149751739 149751779 41 AGAGAGTAGTGAGGAGGGATCTGAAAGTGAGGAGGAGGCCC AGAAAGTAGTGAGGAGGGATCTGAAAGTGAGGAGGAGGCCC < 41bp 1 0.67039751335748 1 0.57197093963623 experiment 0.65920497328504 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149751759 chr5:149751742 synonymous SNV . 0 4 hm5C_associated_SNPs_30237 0 0 1 0 1 TCOF1 chr5:149751799 5'GT 149751799 Upstream 58bp
chr7 92987701 92987701 1 + C T LUSC 92987685 + 92987665 92987705 41 GTTTGCCTGGGATCCCATATCAATAAGAAAGCAAGACAAAA GTTTGCCTGGGATCCCATATCAATAAGAAAGCAAGATAAAA < 41bp 1 0.509029706354127 1 0.413690477609634 experiment 0.981940587291746 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS50 ENSG00000004766 CDS Human protein_coding chr7:92987685 chr7:92987701 stopgain 0.996 1 37 hm5C_associated_SNPs_30238 0 0 0 2 1 VPS50 chr7:92987629 3'AG 92987629 Downstream 73bp
chr1 180034372 180034372 1 + G A LUSC 180034360 + 180034340 180034380 41 ATCTCCAGCAGTGAAACTAGCAGCATTATGCAGAAACTGAA ATCTCCAGCAGTGAAACTAGCAGCATTATGCAAAAACTGAA < 41bp 1 0.562121301105635 1 0.155600070953369 experiment 0.87575739778873 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180034360 chr1:180034372 synonymous SNV . 0 33 hm5C_associated_SNPs_30240 0 0 1 0 1 CEP350 chr1:180034407 5'GT 180034407 Upstream 36bp
chr1 65684559 65684559 1 + C T LUSC 65684546 + 65684526 65684566 41 CTTAAAGATCGTCTCAGCCGCCGTTGGATTCACCCTCCTAG CTTAAAGATCGTCTCAGCCGCCGTTGGATTCACTCTCCTAG < 41bp 1 0.0913515690591697 1 0.121435344219208 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AK4 ENSG00000162433 CDS Human protein_coding chr1:65684546 chr1:65684559 nonsynonymous SNV 0.995 1 34 hm5C_associated_SNPs_30241 0 0 0 0 1 AK4 chr1:65684609 5'GT 65684609 Upstream 51bp
chr16 22328500 22328500 1 + G C LUSC 22328499 + 22328479 22328519 41 CTGCGCACGCTGCCCCTGGCCGATCAGATCAAGATCCTGAT CTGCGCACGCTGCCCCTGGCCCATCAGATCAAGATCCTGAT < 41bp 1 0.0598869823045544 1 0.0899012982845306 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22328499 chr16:22328500 nonsynonymous SNV 0.987 4 22 hm5C_associated_SNPs_30242 0 0 1 0 2 POLR3E chr16:22328436 3'AG 22328436 Downstream 65bp
chr16 22328500 22328500 1 + G C LUSC 22328499 + 22328479 22328519 41 CTGCGCACGCTGCCCCTGGCCGATCAGATCAAGATCCTGAT CTGCGCACGCTGCCCCTGGCCCATCAGATCAAGATCCTGAT < 41bp 1 0.0598869823045544 1 0.0899012982845306 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22328499 chr16:22328500 nonsynonymous SNV 0.987 4 22 hm5C_associated_SNPs_30242 0 0 1 0 2 POLR3E chr16:22328527 5'GT 22328527 Upstream 28bp
chr16 5127927 5127927 1 + A C LUSC 5127916 + 5127896 5127936 41 ATTTCATTGCAGGGCTGTGACCGTCTACGACAAGCCCGCAT ATTTCATTGCAGGGCTGTGACCGTCTACGACCAGCCCGCAT < 41bp 1 0.167623199942754 1 0.218217194080353 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5127916 chr16:5127927 nonsynonymous SNV 0.043 3 32 hm5C_associated_SNPs_30247 0 0 1 0 2 ALG1 chr16:5127908 3'AG 5127908 Downstream 20bp
chr16 5127927 5127927 1 + A C LUSC 5127916 + 5127896 5127936 41 ATTTCATTGCAGGGCTGTGACCGTCTACGACAAGCCCGCAT ATTTCATTGCAGGGCTGTGACCGTCTACGACCAGCCCGCAT < 41bp 1 0.167623199942754 1 0.218217194080353 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5127916 chr16:5127927 nonsynonymous SNV 0.043 3 32 hm5C_associated_SNPs_30247 0 0 1 0 2 ALG1 chr16:5128018 5'GT 5128018 Upstream 92bp
chr6 32134487 32134487 1 + C T LUSC 32134481 + 32134461 32134501 41 CGGGCGCTGTGTTCCAGGACCATGTACCGCGTTATGTGGCG CGGGCGCTGTGTTCCAGGACCATGTATCGCGTTATGTGGCG < 41bp 1 0.226413168392004 1 0.180243372917175 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134481 chr6:32134487 synonymous SNV . 0 27 hm5C_associated_SNPs_30250 0 0 0 0 1 EGFL8 chr6:32134478 3'AG 32134478 Downstream 10bp
chr8 145697789 145697789 1 + G T LUSC 145697780 + 145697760 145697800 41 GGGCCTCCCGAGCGCCTGGCCGTGAGGCAGGGCCCAGAAGG GGGCCTCCCGAGCGCCTGGCCGTGAGGCATGGCCCAGAAGG < 41bp 1 0.69595510954512 1 0.66035395860672 experiment 0.608089780909759 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145697780 chr8:145697789 nonsynonymous SNV 0.867 0 30 hm5C_associated_SNPs_30251 0 0 1 0 2 KIFC2 chr8:145697744 3'AG 145697744 Downstream 46bp
chr8 145697789 145697789 1 + G T LUSC 145697780 + 145697760 145697800 41 GGGCCTCCCGAGCGCCTGGCCGTGAGGCAGGGCCCAGAAGG GGGCCTCCCGAGCGCCTGGCCGTGAGGCATGGCCCAGAAGG < 41bp 1 0.69595510954512 1 0.66035395860672 experiment 0.608089780909759 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145697780 chr8:145697789 nonsynonymous SNV 0.867 0 30 hm5C_associated_SNPs_30251 0 0 1 0 2 KIFC2 chr8:145697867 5'GT 145697867 Upstream 79bp
chr5 179151779 179151779 1 + A T LUSC 179151781 + 179151761 179151801 41 AGGAGGAAGGAGAAGAGAAACTTGGTAAGAAACAGAGTCCA AGGAGGAAGGAGAAGAGATACTTGGTAAGAAACAGAGTCCA < 41bp 1 0.691053801425154 1 0.221968770027161 experiment 0.617892397149692 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179151781 chr5:179151779 nonsynonymous SNV 0.953 0 19 hm5C_associated_SNPs_30252 0 0 1 0 1 CANX chr5:179151784 5'GT 179151784 Upstream 6bp
chr13 77570191 77570191 1 + G T LUSC 77570189 + 77570169 77570209 41 TGGTGTAATCAAGGCGCTGCCTGCTTTTTTGAGGGAATTGA TGGTGTAATCAAGGCGCTGCCTTCTTTTTTGAGGGAATTGA < 41bp 1 0.329609429627264 1 0.15270933508873 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLN5 ENSG00000102805 CDS Human protein_coding chr13:77570189 chr13:77570191 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_30259 0 0 1 0 1 CLN5 chr13:77570262 5'GT 77570262 Upstream 72bp
chr10 17275867 17275867 1 + T A LUSC 17275853 + 17275833 17275873 41 AGCCTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAA AGCCTGACCTCACGGCTGCCCTGCGTGACGTACGACAGCAA < 41bp 1 0.601480811367868 1 0.832867324352264 experiment 0.797038377264264 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275853 chr10:17275867 synonymous SNV . 0 35 hm5C_associated_SNPs_30260 0 0 1 1 2 VIM chr10:17275769 3'AG 17275769 Downstream 99bp
chr10 17275867 17275867 1 + T A LUSC 17275853 + 17275833 17275873 41 AGCCTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAA AGCCTGACCTCACGGCTGCCCTGCGTGACGTACGACAGCAA < 41bp 1 0.601480811367868 1 0.832867324352264 experiment 0.797038377264264 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275853 chr10:17275867 synonymous SNV . 0 35 hm5C_associated_SNPs_30260 0 0 1 1 2 VIM chr10:17275930 5'GT 17275930 Upstream 64bp
chr10 17275867 17275867 1 + T A LUSC 17275856 + 17275836 17275876 41 CTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAATAT CTGACCTCACGGCTGCCCTGCGTGACGTACGACAGCAATAT < 41bp 1 0.374026110656239 1 0.193407416343689 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275856 chr10:17275867 synonymous SNV . 0 32 hm5C_associated_SNPs_30261 0 0 1 1 2 VIM chr10:17275769 3'AG 17275769 Downstream 99bp
chr10 17275867 17275867 1 + T A LUSC 17275856 + 17275836 17275876 41 CTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAATAT CTGACCTCACGGCTGCCCTGCGTGACGTACGACAGCAATAT < 41bp 1 0.374026110656239 1 0.193407416343689 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275856 chr10:17275867 synonymous SNV . 0 32 hm5C_associated_SNPs_30261 0 0 1 1 2 VIM chr10:17275930 5'GT 17275930 Upstream 64bp
chr10 17275867 17275867 1 + T A LUSC 17275861 + 17275841 17275881 41 CTCACGGCTGCCCTGCGTGACGTACGTCAGCAATATGAAAG CTCACGGCTGCCCTGCGTGACGTACGACAGCAATATGAAAG < 41bp 1 0.100359644377958 1 0.0528012812137604 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275861 chr10:17275867 synonymous SNV . 0 27 hm5C_associated_SNPs_30262 0 0 1 1 2 VIM chr10:17275769 3'AG 17275769 Downstream 99bp
chr10 17275867 17275867 1 + T A LUSC 17275861 + 17275841 17275881 41 CTCACGGCTGCCCTGCGTGACGTACGTCAGCAATATGAAAG CTCACGGCTGCCCTGCGTGACGTACGACAGCAATATGAAAG < 41bp 1 0.100359644377958 1 0.0528012812137604 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275861 chr10:17275867 synonymous SNV . 0 27 hm5C_associated_SNPs_30262 0 0 1 1 2 VIM chr10:17275930 5'GT 17275930 Upstream 64bp
chr1 162725023 162725023 1 + G C LUSC 162725020 + 162725000 162725040 41 CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA CCCATTGTAGCCAGATTTGTCCGCTTCATTCCAGTCACCGA < 41bp 1 0.29057155912438 1 0.676501393318176 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162725020 chr1:162725023 synonymous SNV . 0 24 hm5C_associated_SNPs_30264 0 0 0 0 2 DDR2 chr1:162724946 3'AG 162724946 Downstream 78bp
chr1 162725023 162725023 1 + G C LUSC 162725020 + 162725000 162725040 41 CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA CCCATTGTAGCCAGATTTGTCCGCTTCATTCCAGTCACCGA < 41bp 1 0.29057155912438 1 0.676501393318176 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162725020 chr1:162725023 synonymous SNV . 0 24 hm5C_associated_SNPs_30264 0 0 0 0 2 DDR2 chr1:162725093 5'GT 162725093 Upstream 71bp
chr14 52417389 52417389 1 + G T LUSC 52417401 + 52417381 52417421 41 TCTATCCAGCACTCCGATGGCCAGCAACAACACCGCCAGCA TCTATCCATCACTCCGATGGCCAGCAACAACACCGCCAGCA < 41bp 1 0.280332434934439 1 0.207367926836014 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNG2 ENSG00000186469 CDS Human protein_coding chr14:52417401 chr14:52417389 nonsynonymous SNV 0.001 1 9 hm5C_associated_SNPs_30265 0 0 0 0 1 GNG2 chr14:52417483 5'GT 52417483 Upstream 95bp
chr9 104307056 104307056 1 + G C LUSC 104307070 + 104307050 104307090 41 TAATCTGATAGTGGAGGAAGCAGTGCAGGAGCTGAACTCTT TAATCTCATAGTGGAGGAAGCAGTGCAGGAGCTGAACTCTT < 41bp 1 0.300555054890452 1 0.721238255500793 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF20 ENSG00000155827 CDS Human protein_coding chr9:104307070 chr9:104307056 synonymous SNV . 0 7 hm5C_associated_SNPs_30266 0 0 0 0 1 RNF20 chr9:104307049 3'AG 104307049 Downstream 8bp
chr12 78520960 78520960 1 + A G LUSC 78520959 + 78520939 78520979 41 TTTAACAGCATGCAGCTTGACAGAAATACACTACCCAAAAA TTTAACAGCATGCAGCTTGACGGAAATACACTACCCAAAAA < 41bp 1 0.472253766736681 1 0.423526644706726 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAV3 ENSG00000067798 CDS Human protein_coding chr12:78520959 chr12:78520960 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_30267 0 0 0 0 2 NAV3 chr12:78520947 3'AG 78520947 Downstream 14bp
chr12 78520960 78520960 1 + A G LUSC 78520959 + 78520939 78520979 41 TTTAACAGCATGCAGCTTGACAGAAATACACTACCCAAAAA TTTAACAGCATGCAGCTTGACGGAAATACACTACCCAAAAA < 41bp 1 0.472253766736681 1 0.423526644706726 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAV3 ENSG00000067798 CDS Human protein_coding chr12:78520959 chr12:78520960 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_30267 0 0 0 0 2 NAV3 chr12:78520988 5'GT 78520988 Upstream 29bp
chr11 44639802 44639802 1 + G T LUSC 44639783 + 44639763 44639803 41 CTCATGAATCGCCCTGAGGTCACCTACCCCTGTTCCTGCGA CTCATGAATCGCCCTGAGGTCACCTACCCCTGTTCCTGCTA < 41bp 1 0.401916091909102 1 0.0853052735328674 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD82 ENSG00000085117 CDS Human protein_coding chr11:44639783 chr11:44639802 stopgain 0.317 0 40 hm5C_associated_SNPs_30268 0 0 1 0 1 CD82 chr11:44639712 3'AG 44639712 Downstream 91bp
chr11 44639800 44639800 1 + G T LUSC 44639783 + 44639763 44639803 41 CTCATGAATCGCCCTGAGGTCACCTACCCCTGTTCCTGCGA CTCATGAATCGCCCTGAGGTCACCTACCCCTGTTCCTTCGA < 41bp 1 0.365936271007297 1 0.0709591209888458 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD82 ENSG00000085117 CDS Human protein_coding chr11:44639783 chr11:44639800 nonsynonymous SNV 0.776 4 38 hm5C_associated_SNPs_30270 0 0 1 0 1 CD82 chr11:44639712 3'AG 44639712 Downstream 89bp
chr10 118318738 118318738 1 + A G LUSC 118318718 + 118318698 118318738 41 CCCACAGATGGGTCACTATGCTGATAGATATCCTGGGAAAA CCCACAGATGGGTCACTATGCTGATAGATATCCTGGGAAAG < 41bp 1 0.527953823817356 1 0.147494703531265 experiment 0.944092352365287 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318718 chr10:118318738 nonsynonymous SNV 0.017 3 41 hm5C_associated_SNPs_30271 0 0 0 0 2 PNLIP chr10:118318666 3'AG 118318666 Downstream 73bp
chr10 118318738 118318738 1 + A G LUSC 118318718 + 118318698 118318738 41 CCCACAGATGGGTCACTATGCTGATAGATATCCTGGGAAAA CCCACAGATGGGTCACTATGCTGATAGATATCCTGGGAAAG < 41bp 1 0.527953823817356 1 0.147494703531265 experiment 0.944092352365287 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318718 chr10:118318738 nonsynonymous SNV 0.017 3 41 hm5C_associated_SNPs_30271 0 0 0 0 2 PNLIP chr10:118318795 5'GT 118318795 Upstream 58bp
chr10 118318738 118318738 1 + A G LUSC 118318729 + 118318709 118318749 41 GTCACTATGCTGATAGATATCCTGGGAAAACAAATGATGTG GTCACTATGCTGATAGATATCCTGGGAAAGCAAATGATGTG < 41bp 1 0.570444216830761 1 0.349728107452393 experiment 0.859111566338479 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318729 chr10:118318738 nonsynonymous SNV 0.017 3 30 hm5C_associated_SNPs_30272 0 0 0 0 2 PNLIP chr10:118318666 3'AG 118318666 Downstream 73bp
chr10 118318738 118318738 1 + A G LUSC 118318729 + 118318709 118318749 41 GTCACTATGCTGATAGATATCCTGGGAAAACAAATGATGTG GTCACTATGCTGATAGATATCCTGGGAAAGCAAATGATGTG < 41bp 1 0.570444216830761 1 0.349728107452393 experiment 0.859111566338479 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318729 chr10:118318738 nonsynonymous SNV 0.017 3 30 hm5C_associated_SNPs_30272 0 0 0 0 2 PNLIP chr10:118318795 5'GT 118318795 Upstream 58bp
chr22 51117847 51117847 1 + C G LUSC 51117853 + 51117833 51117873 41 CACATCTGTGCCCTCTACAACCAGGTGCGACTGTGTGTCCT CACATCTGTGCCCTGTACAACCAGGTGCGACTGTGTGTCCT < 41bp 1 0.233443449639114 1 0.447756230831146 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51117853 chr22:51117847 synonymous SNV . 0 15 hm5C_associated_SNPs_30273 0 0 0 0 1 SHANK3 chr22:51117856 5'GT 51117856 Upstream 10bp
chr3 32483427 32483427 1 + G C LUSC 32483437 + 32483417 32483457 41 TTTGCGACTTGATAATGATCCTCGCCTTTTACCTGGTCCAC TTTGCGACTTCATAATGATCCTCGCCTTTTACCTGGTCCAC < 41bp 1 0.471618936465435 1 0.116212427616119 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32483437 chr3:32483427 nonsynonymous SNV 1.000 0 11 hm5C_associated_SNPs_30277 0 0 1 0 2 CMTM7 chr3:32483332 3'AG 32483332 Downstream 96bp
chr3 32483427 32483427 1 + G C LUSC 32483437 + 32483417 32483457 41 TTTGCGACTTGATAATGATCCTCGCCTTTTACCTGGTCCAC TTTGCGACTTCATAATGATCCTCGCCTTTTACCTGGTCCAC < 41bp 1 0.471618936465435 1 0.116212427616119 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32483437 chr3:32483427 nonsynonymous SNV 1.000 0 11 hm5C_associated_SNPs_30277 0 0 1 0 2 CMTM7 chr3:32483505 5'GT 32483505 Upstream 79bp
chr22 26291141 26291141 1 + G C LUSC 26291140 + 26291120 26291160 41 CAGCAGACGAGTGGCAGATGCGCTTCGACTGTGCTCAGATG CAGCAGACGAGTGGCAGATGCCCTTCGACTGTGCTCAGATG < 41bp 1 0.0298564504481378 1 0.0800071656703949 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26291140 chr22:26291141 nonsynonymous SNV 0.854 3 22 hm5C_associated_SNPs_30281 0 0 1 0 2 MYO18B chr22:26291123 3'AG 26291123 Downstream 19bp
chr22 26291141 26291141 1 + G C LUSC 26291140 + 26291120 26291160 41 CAGCAGACGAGTGGCAGATGCGCTTCGACTGTGCTCAGATG CAGCAGACGAGTGGCAGATGCCCTTCGACTGTGCTCAGATG < 41bp 1 0.0298564504481378 1 0.0800071656703949 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26291140 chr22:26291141 nonsynonymous SNV 0.854 3 22 hm5C_associated_SNPs_30281 0 0 1 0 2 MYO18B chr22:26291126 3'AG 26291126 Downstream 16bp
chr12 131488798 131488798 1 + G T LUSC 131488788 + 131488768 131488808 41 TTCCTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCA TTCCTCCCATTACCGCTTCCCGGCCCACGGTCAGAGCTTCA < 41bp 1 0.203526557218357 1 0.312256067991257 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488788 chr12:131488798 synonymous SNV . 0 31 hm5C_associated_SNPs_30282 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 44bp
chr12 131488798 131488798 1 + G T LUSC 131488791 + 131488771 131488811 41 CTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCC CTCCCATTACCGCTTCCCGGCCCACGGTCAGAGCTTCATCC < 41bp 1 0.0438965533253879 1 0.0300208032131195 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488791 chr12:131488798 synonymous SNV . 0 28 hm5C_associated_SNPs_30283 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 44bp
chr12 131488798 131488798 1 + G T LUSC 131488792 + 131488772 131488812 41 TCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCA TCCCATTACCGCTTCCCGGCCCACGGTCAGAGCTTCATCCA < 41bp 1 0.239053386612812 1 0.158117979764938 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488792 chr12:131488798 synonymous SNV . 0 27 hm5C_associated_SNPs_30284 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 44bp
chr12 131488798 131488798 1 + G T LUSC 131488793 + 131488773 131488813 41 CCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAG CCCATTACCGCTTCCCGGCCCACGGTCAGAGCTTCATCCAG < 41bp 1 0.624777834863092 1 0.414950370788574 experiment 0.750444330273815 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488793 chr12:131488798 synonymous SNV . 0 26 hm5C_associated_SNPs_30285 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 44bp
chr12 131488798 131488798 1 + G T LUSC 131488795 + 131488775 131488815 41 CATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAGAT CATTACCGCTTCCCGGCCCACGGTCAGAGCTTCATCCAGAT < 41bp 1 0.171142861876112 1 0.699609041213989 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488795 chr12:131488798 synonymous SNV . 0 24 hm5C_associated_SNPs_30286 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 44bp
chr12 131488798 131488798 1 + G T LUSC 131488799 + 131488779 131488819 41 ACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAGATCCCC ACCGCTTCCCGGCCCACGGTCAGAGCTTCATCCAGATCCCC < 41bp 1 0.423102253598534 1 0.751436829566956 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488799 chr12:131488798 synonymous SNV . 0 20 hm5C_associated_SNPs_30287 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 44bp
chr8 124787443 124787443 1 + C G LUSC 124787439 + 124787419 124787459 41 TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGCT TATGAGGAACTGCTAAAGTACAGCGGAGATCATCTCATGCT < 41bp 1 0.667082672826455 1 0.427761793136597 experiment 0.665834654347091 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787439 chr8:124787443 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_30288 0 0 0 0 2 FAM91A1 chr8:124787387 3'AG 124787387 Downstream 57bp
chr8 124787443 124787443 1 + C G LUSC 124787439 + 124787419 124787459 41 TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGCT TATGAGGAACTGCTAAAGTACAGCGGAGATCATCTCATGCT < 41bp 1 0.667082672826455 1 0.427761793136597 experiment 0.665834654347091 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787439 chr8:124787443 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_30288 0 0 0 0 2 FAM91A1 chr8:124787538 5'GT 124787538 Upstream 96bp
chr1 114215971 114215971 1 + G T LUSC 114215980 + 114215960 114216000 41 CAGTAGAGCTGGAGAGAGGCCCCCGGGGCTTTGGATTCAGC CAGTAGAGCTGTAGAGAGGCCCCCGGGGCTTTGGATTCAGC < 41bp 1 0.185884684963862 1 0.169106990098953 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAGI3 ENSG00000081026 CDS Human protein_coding chr1:114215980 chr1:114215971 stopgain 1.000 1 12 hm5C_associated_SNPs_30289 0 0 0 0 1 MAGI3 chr1:114215944 3'AG 114215944 Downstream 28bp
chr1 40922637 40922637 1 + C T LUSC 40922642 + 40922622 40922662 41 GTTAACCTTCAAGGACGTATCTGTGGACTTCACTCAGGAGG GTTAACCTTCAAGGATGTATCTGTGGACTTCACTCAGGAGG < 41bp 1 0.676033092446665 1 0.642999112606049 experiment 0.64793381510667 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZFP69B ENSG00000187801 CDS Human protein_coding chr1:40922642 chr1:40922637 nonsynonymous SNV 0.958 0 16 hm5C_associated_SNPs_30290 0 0 0 0 1 ZFP69B chr1:40922617 3'AG 40922617 Downstream 21bp
chr1 22307651 22307651 1 + G C LUSC 22307631 + 22307611 22307651 41 ACTCTGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCG ACTCTGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCC < 41bp 1 0.107370797993477 1 0.34442538022995 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307631 chr1:22307651 synonymous SNV . 0 41 hm5C_associated_SNPs_30291 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 15bp
chr1 22307651 22307651 1 + G C LUSC 22307634 + 22307614 22307654 41 CTGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGT CTGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCCTGT < 41bp 1 0.131981240399934 1 0.105732351541519 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307634 chr1:22307651 synonymous SNV . 0 38 hm5C_associated_SNPs_30292 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 15bp
chr1 22307651 22307651 1 + G C LUSC 22307635 + 22307615 22307655 41 TGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTG TGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCCTGTG < 41bp 1 0.137611658708318 1 0.0764385759830475 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307635 chr1:22307651 synonymous SNV . 0 37 hm5C_associated_SNPs_30293 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 15bp
chr1 22307651 22307651 1 + G C LUSC 22307637 + 22307617 22307657 41 GGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG GGGACCTCTTTGTGCATCCACTCTGGAACCGCTCCTGTGTG < 41bp 1 0.313448626064122 1 0.0939785540103912 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307637 chr1:22307651 synonymous SNV . 0 35 hm5C_associated_SNPs_30294 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 15bp
chr1 22307651 22307651 1 + G C LUSC 22307639 + 22307619 22307659 41 GACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTGTGGC GACCTCTTTGTGCATCCACTCTGGAACCGCTCCTGTGTGGC < 41bp 1 0.686827027493584 1 0.840980529785156 experiment 0.626345945012832 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307639 chr1:22307651 synonymous SNV . 0 33 hm5C_associated_SNPs_30295 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 15bp
chr1 22307651 22307651 1 + G C LUSC 22307645 + 22307625 22307665 41 TTTGTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGG TTTGTGCATCCACTCTGGAACCGCTCCTGTGTGGCCTGTGG < 41bp 1 0.101358166710911 1 0.0524803400039673 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307645 chr1:22307651 synonymous SNV . 0 27 hm5C_associated_SNPs_30296 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 15bp
chr1 22307651 22307651 1 + G C LUSC 22307646 + 22307626 22307666 41 TTGTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGGG TTGTGCATCCACTCTGGAACCGCTCCTGTGTGGCCTGTGGG < 41bp 1 0.128460401955637 1 0.0937142968177795 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307646 chr1:22307651 synonymous SNV . 0 26 hm5C_associated_SNPs_30297 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 15bp
chr1 22307651 22307651 1 + G C LUSC 22307648 + 22307628 22307668 41 GTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGGGTG GTGCATCCACTCTGGAACCGCTCCTGTGTGGCCTGTGGGTG < 41bp 1 0.288326575746724 1 0.251418441534042 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307648 chr1:22307651 synonymous SNV . 0 24 hm5C_associated_SNPs_30298 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 15bp
chr6 160494403 160494403 1 + G T LUSC 160494408 + 160494388 160494428 41 TTCGTGTGCAGGCCTGAGGCCAGGCCAACCAATAGGCCCAT TTCGTGTGCAGGCCTTAGGCCAGGCCAACCAATAGGCCCAT < 41bp 1 0.337249456744708 1 0.823978662490845 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160494408 chr6:160494403 stopgain 0.635 0 16 hm5C_associated_SNPs_30299 0 0 1 0 1 IGF2R chr6:160494501 5'GT 160494501 Upstream 99bp
chr9 101777769 101777769 1 + A T LUSC 101777755 + 101777735 101777775 41 GCTGCAACCGAAGTGTCCCTCAGTACTTTTGAGGATGAGGA GCTGCAACCGAAGTGTCCCTCAGTACTTTTGAGGTTGAGGA < 41bp 1 0.304945462759976 1 0.797161400318146 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101777755 chr9:101777769 nonsynonymous SNV 0.762 2 35 hm5C_associated_SNPs_30305 0 0 0 0 1 COL15A1 chr9:101777848 5'GT 101777848 Upstream 80bp
chr7 99701305 99701305 1 + G C LUSC 99701304 + 99701284 99701324 41 GCCGCCCCGTCCTGTCCAGTCGCTCTGACCAGGTGAGGGAA GCCGCCCCGTCCTGTCCAGTCCCTCTGACCAGGTGAGGGAA < 41bp 1 0.192332432539227 1 0.0929222106933594 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99701304 chr7:99701305 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_30307 0 0 0 0 2 AP4M1 chr7:99701235 3'AG 99701235 Downstream 71bp
chr7 99701305 99701305 1 + G C LUSC 99701304 + 99701284 99701324 41 GCCGCCCCGTCCTGTCCAGTCGCTCTGACCAGGTGAGGGAA GCCGCCCCGTCCTGTCCAGTCCCTCTGACCAGGTGAGGGAA < 41bp 1 0.192332432539227 1 0.0929222106933594 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99701304 chr7:99701305 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_30307 0 0 0 0 2 AP4M1 chr7:99701315 5'GT 99701315 Upstream 11bp
chr8 110569170 110569170 1 + A T LUSC 110569185 + 110569165 110569205 41 TTGTTATTAAGAAGAGAGAACCATTGAATTTTGGCATCCCA TTGTTTTTAAGAAGAGAGAACCATTGAATTTTGGCATCCCA < 41bp 1 0.0302924723557969 1 0.149513363838196 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110569185 chr8:110569170 nonsynonymous SNV 0.995 2 6 hm5C_associated_SNPs_30309 0 0 1 0 1 EBAG9 chr8:110569164 3'AG 110569164 Downstream 7bp
chr7 129093116 129093116 1 + G T LUSC 129093106 + 129093086 129093126 41 ATTCAGAGGTCGATGTGCTACACTGGTCCAGGTACAACTGC ATTCAGAGGTCGATGTGCTACACTGGTCCATGTACAACTGC < 41bp 1 0.596682199701354 1 0.156086981296539 experiment 0.806635600597293 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129093106 chr7:129093116 nonsynonymous SNV 0.998 4 31 hm5C_associated_SNPs_30310 0 0 1 0 2 STRIP2 chr7:129093068 3'AG 129093068 Downstream 49bp
chr7 129093116 129093116 1 + G T LUSC 129093106 + 129093086 129093126 41 ATTCAGAGGTCGATGTGCTACACTGGTCCAGGTACAACTGC ATTCAGAGGTCGATGTGCTACACTGGTCCATGTACAACTGC < 41bp 1 0.596682199701354 1 0.156086981296539 experiment 0.806635600597293 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129093106 chr7:129093116 nonsynonymous SNV 0.998 4 31 hm5C_associated_SNPs_30310 0 0 1 0 2 STRIP2 chr7:129093188 5'GT 129093188 Upstream 73bp
chr11 65687430 65687430 1 + G C LUSC 65687433 + 65687413 65687453 41 CCTCAGCCCGGGCGCTCGAGCTCTTCCTAGAGTCGCTGTTG CCTCAGCCCGGGCGCTCCAGCTCTTCCTAGAGTCGCTGTTG < 41bp 1 0.281390314055581 1 0.153156191110611 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DRAP1 ENSG00000175550 CDS Human protein_coding chr11:65687433 chr11:65687430 nonsynonymous SNV 0.997 3 18 hm5C_associated_SNPs_30312 0 0 1 0 2 DRAP1 chr11:65687419 3'AG 65687419 Downstream 12bp
chr11 65687430 65687430 1 + G C LUSC 65687433 + 65687413 65687453 41 CCTCAGCCCGGGCGCTCGAGCTCTTCCTAGAGTCGCTGTTG CCTCAGCCCGGGCGCTCCAGCTCTTCCTAGAGTCGCTGTTG < 41bp 1 0.281390314055581 1 0.153156191110611 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DRAP1 ENSG00000175550 CDS Human protein_coding chr11:65687433 chr11:65687430 nonsynonymous SNV 0.997 3 18 hm5C_associated_SNPs_30312 0 0 1 0 2 DRAP1 chr11:65687512 5'GT 65687512 Upstream 83bp
chr19 13054408 13054408 1 + G A LUSC 13054404 + 13054384 13054424 41 ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA ATCACCAACGATGAGGCATACGCTAAGGAGTTTGGCAACGA < 41bp 1 0.755080349614089 1 0.197851598262787 experiment 0.489839300771822 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054404 chr19:13054408 nonsynonymous SNV 0.532 1 25 hm5C_associated_SNPs_30313 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 58bp
chr19 13054408 13054408 1 + G A LUSC 13054404 + 13054384 13054424 41 ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA ATCACCAACGATGAGGCATACGCTAAGGAGTTTGGCAACGA < 41bp 1 0.755080349614089 1 0.197851598262787 experiment 0.489839300771822 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054404 chr19:13054408 nonsynonymous SNV 0.532 1 25 hm5C_associated_SNPs_30313 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 36bp
chr19 13054408 13054408 1 + G A LUSC 13054406 + 13054386 13054426 41 CACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGAGA CACCAACGATGAGGCATACGCTAAGGAGTTTGGCAACGAGA < 41bp 1 0.58184824599212 1 0.184961766004562 experiment 0.836303508015759 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054406 chr19:13054408 nonsynonymous SNV 0.532 1 23 hm5C_associated_SNPs_30314 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 58bp
chr19 13054408 13054408 1 + G A LUSC 13054406 + 13054386 13054426 41 CACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGAGA CACCAACGATGAGGCATACGCTAAGGAGTTTGGCAACGAGA < 41bp 1 0.58184824599212 1 0.184961766004562 experiment 0.836303508015759 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054406 chr19:13054408 nonsynonymous SNV 0.532 1 23 hm5C_associated_SNPs_30314 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 36bp
chr19 13054408 13054408 1 + G A LUSC 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTAAGGAGTTTGGCAACGAGACGTGGGGCGTAAC < 41bp 1 0.578912396662461 1 0.582678318023682 experiment 0.842175206675078 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054408 nonsynonymous SNV 0.532 1 10 hm5C_associated_SNPs_30315 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 58bp
chr19 13054408 13054408 1 + G A LUSC 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTAAGGAGTTTGGCAACGAGACGTGGGGCGTAAC < 41bp 1 0.578912396662461 1 0.582678318023682 experiment 0.842175206675078 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054408 nonsynonymous SNV 0.532 1 10 hm5C_associated_SNPs_30315 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 36bp
chr19 13054408 13054408 1 + G A LUSC 13054427 + 13054407 13054447 41 TGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA TAAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA < 41bp 1 0.667567937944205 1 0.43988099694252 experiment 0.664864124111591 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054427 chr19:13054408 nonsynonymous SNV 0.532 1 2 hm5C_associated_SNPs_30316 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 58bp
chr19 13054408 13054408 1 + G A LUSC 13054427 + 13054407 13054447 41 TGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA TAAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA < 41bp 1 0.667567937944205 1 0.43988099694252 experiment 0.664864124111591 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054427 chr19:13054408 nonsynonymous SNV 0.532 1 2 hm5C_associated_SNPs_30316 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 36bp
chr19 39950220 39950220 1 + C G LUSC 39950216 + 39950196 39950236 41 TAGGGATCCCAATCTGTGGACTGTCAAATGTAAGGTATGTG TAGGGATCCCAATCTGTGGACTGTGAAATGTAAGGTATGTG < 41bp 1 0.116520665413992 1 0.0984952747821808 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950216 chr19:39950220 synonymous SNV . 0 25 hm5C_associated_SNPs_30318 0 0 1 0 2 SUPT5H chr19:39950199 3'AG 39950199 Downstream 22bp
chr19 39950220 39950220 1 + C G LUSC 39950216 + 39950196 39950236 41 TAGGGATCCCAATCTGTGGACTGTCAAATGTAAGGTATGTG TAGGGATCCCAATCTGTGGACTGTGAAATGTAAGGTATGTG < 41bp 1 0.116520665413992 1 0.0984952747821808 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950216 chr19:39950220 synonymous SNV . 0 25 hm5C_associated_SNPs_30318 0 0 1 0 2 SUPT5H chr19:39950229 5'GT 39950229 Upstream 10bp
chr2 27900188 27900188 1 + G C LUSC 27900192 + 27900172 27900212 41 TAAATGATGCTGAAAGGGAACTTTCTGAAATTTCTGAGAGA TAAATGATGCTGAAAGCGAACTTTCTGAAATTTCTGAGAGA < 41bp 1 0.0342949891769459 1 0.0518271923065186 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27900192 chr2:27900188 nonsynonymous SNV 0.486 0 17 hm5C_associated_SNPs_30319 0 0 1 0 2 SLC4A1AP chr2:27900162 3'AG 27900162 Downstream 27bp
chr2 27900188 27900188 1 + G C LUSC 27900192 + 27900172 27900212 41 TAAATGATGCTGAAAGGGAACTTTCTGAAATTTCTGAGAGA TAAATGATGCTGAAAGCGAACTTTCTGAAATTTCTGAGAGA < 41bp 1 0.0342949891769459 1 0.0518271923065186 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27900192 chr2:27900188 nonsynonymous SNV 0.486 0 17 hm5C_associated_SNPs_30319 0 0 1 0 2 SLC4A1AP chr2:27900231 5'GT 27900231 Upstream 44bp
chr17 77077136 77077136 1 + G A LUSC 77077130 + 77077110 77077150 41 AAAGTGGGCAGCTCAAATGGCAAGACGAACTCAACCAGCAC AAAGTGGGCAGCTCAAATGGCAAGACAAACTCAACCAGCAC < 41bp 1 0.658535831996713 1 0.661464095115662 experiment 0.682928336006575 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ENGASE ENSG00000167280 CDS Human protein_coding chr17:77077130 chr17:77077136 nonsynonymous SNV 0.323 3 27 hm5C_associated_SNPs_30322 0 0 1 0 1 ENGASE chr17:77077155 5'GT 77077155 Upstream 20bp
chr2 197583256 197583256 1 + G A LUSC 197583260 + 197583240 197583280 41 TTGAAAGAAGTAAAGAGGAGCTGTCCCGAACAGTGAAGTGT TTGAAAGAAGTAAAGAAGAGCTGTCCCGAACAGTGAAGTGT < 41bp 1 0.0594042504588089 1 0.0756790339946747 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197583260 chr2:197583256 synonymous SNV . 0 17 hm5C_associated_SNPs_30323 0 0 0 0 1 CCDC150 chr2:197583227 3'AG 197583227 Downstream 30bp
chr13 48941708 48941708 1 + G A LUSC 48941724 + 48941704 48941744 41 TCATGATAAAACTCTTCAGACTGATTCTATAGACAGGTATT TCATAATAAAACTCTTCAGACTGATTCTATAGACAGGTATT < 41bp 1 0.160037505088761 1 0.0586643218994141 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RB1 ENSG00000139687 CDS Human protein_coding chr13:48941724 chr13:48941708 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_30324 0 0 1 0 2 RB1 chr13:48941630 3'AG 48941630 Downstream 79bp
chr13 48941708 48941708 1 + G A LUSC 48941724 + 48941704 48941744 41 TCATGATAAAACTCTTCAGACTGATTCTATAGACAGGTATT TCATAATAAAACTCTTCAGACTGATTCTATAGACAGGTATT < 41bp 1 0.160037505088761 1 0.0586643218994141 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RB1 ENSG00000139687 CDS Human protein_coding chr13:48941724 chr13:48941708 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_30324 0 0 1 0 2 RB1 chr13:48941739 5'GT 48941739 Upstream 32bp
chr6 116565164 116565164 1 + G C LUSC 116565147 + 116565127 116565167 41 TGGCTACTATCCAAATCCTCCACTGGTCTTATCAAGTGATG TGGCTACTATCCAAATCCTCCACTGGTCTTATCAAGTCATG < 41bp 1 0.201320944998405 1 0.0241162776947021 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NT5DC1 ENSG00000178425 CDS Human protein_coding chr6:116565147 chr6:116565164 nonsynonymous SNV 0.006 0 38 hm5C_associated_SNPs_30327 0 0 1 0 1 NT5DC1 chr6:116565072 3'AG 116565072 Downstream 93bp
chr2 32673984 32673984 1 + G T LUSC 32673982 + 32673962 32674002 41 GTCAGATGAAATTGATTTATCAGATGTCCTTTCAGGTAGTG GTCAGATGAAATTGATTTATCATATGTCCTTTCAGGTAGTG < 41bp 1 0.0492180717284148 1 0.131064563989639 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673982 chr2:32673984 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_30330 0 0 1 0 1 BIRC6 chr2:32673996 5'GT 32673996 Upstream 13bp
chr2 32673984 32673984 1 + G T LUSC 32673989 + 32673969 32674009 41 GAAATTGATTTATCAGATGTCCTTTCAGGTAGTGATTTCTT GAAATTGATTTATCATATGTCCTTTCAGGTAGTGATTTCTT < 41bp 1 0.00527528880068437 1 0.0131539702415466 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673989 chr2:32673984 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_30331 0 0 1 0 1 BIRC6 chr2:32673996 5'GT 32673996 Upstream 13bp
chr2 32673984 32673984 1 + G T LUSC 32673990 + 32673970 32674010 41 AAATTGATTTATCAGATGTCCTTTCAGGTAGTGATTTCTTT AAATTGATTTATCATATGTCCTTTCAGGTAGTGATTTCTTT < 41bp 1 0.00706864731606944 1 0.0615566372871399 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673990 chr2:32673984 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_30332 0 0 1 0 1 BIRC6 chr2:32673996 5'GT 32673996 Upstream 13bp
chr2 32673984 32673984 1 + G T LUSC 32673994 + 32673974 32674014 41 TGATTTATCAGATGTCCTTTCAGGTAGTGATTTCTTTTATT TGATTTATCATATGTCCTTTCAGGTAGTGATTTCTTTTATT < 41bp 1 0.16133572898205 1 0.161861032247543 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673994 chr2:32673984 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_30333 0 0 1 0 1 BIRC6 chr2:32673996 5'GT 32673996 Upstream 13bp
chr3 128631375 128631375 1 + G C LUSC 128631356 + 128631336 128631376 41 CTTTTCCTTCCCAGATGCTCCAGAAAACCTAGATGAGCAGA CTTTTCCTTCCCAGATGCTCCAGAAAACCTAGATGAGCACA < 41bp 1 0.537000141368915 1 0.629260957241058 experiment 0.92599971726217 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128631356 chr3:128631375 nonsynonymous SNV 0.977 0 40 hm5C_associated_SNPs_30335 0 0 1 1 1 ACAD9 chr3:128631350 3'AG 128631350 Downstream 26bp
chr3 63965681 63965681 1 + G C LUSC 63965690 + 63965670 63965710 41 CAAAAGCAAAGGAGGCAGTGCAAGTGGAAGCAACCGTTCTT CAAAAGCAAAGCAGGCAGTGCAAGTGGAAGCAACCGTTCTT < 41bp 1 0.342707754305909 1 0.737779021263123 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATXN7 ENSG00000163635 CDS Human protein_coding chr3:63965690 chr3:63965681 nonsynonymous SNV 0.999 0 12 hm5C_associated_SNPs_30336 0 0 1 0 1 ATXN7 chr3:63965591 3'AG 63965591 Downstream 91bp
chr3 184648317 184648317 1 + G A LUSC 184648321 + 184648301 184648341 41 GACACAGTGCAGAGGAGAAGCAGTCTGTATGGCAGAAAGCA GACACAGTGCAGAGGAAAAGCAGTCTGTATGGCAGAAAGCA < 41bp 1 0.127440413383591 1 0.250581383705139 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS8 ENSG00000156931 CDS Human protein_coding chr3:184648321 chr3:184648317 synonymous SNV . 0 17 hm5C_associated_SNPs_30339 0 0 1 0 2 VPS8 chr3:184648258 3'AG 184648258 Downstream 60bp
chr3 184648317 184648317 1 + G A LUSC 184648321 + 184648301 184648341 41 GACACAGTGCAGAGGAGAAGCAGTCTGTATGGCAGAAAGCA GACACAGTGCAGAGGAAAAGCAGTCTGTATGGCAGAAAGCA < 41bp 1 0.127440413383591 1 0.250581383705139 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS8 ENSG00000156931 CDS Human protein_coding chr3:184648321 chr3:184648317 synonymous SNV . 0 17 hm5C_associated_SNPs_30339 0 0 1 0 2 VPS8 chr3:184648356 5'GT 184648356 Upstream 40bp
chr17 37358612 37358612 1 + G A LUSC 37358628 + 37358608 37358648 41 ATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCG ATCCACAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCG < 41bp 1 0.103357725848101 1 0.0311072766780853 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358628 chr17:37358612 nonsynonymous SNV 1.000 0 5 hm5C_associated_SNPs_30340 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 43bp
chr17 37358612 37358612 1 + G A LUSC 37358628 + 37358608 37358648 41 ATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCG ATCCACAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCG < 41bp 1 0.103357725848101 1 0.0311072766780853 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358628 chr17:37358612 nonsynonymous SNV 1.000 0 5 hm5C_associated_SNPs_30340 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 81bp
chr3 184040713 184040713 1 + C T LUSC 184040721 + 184040701 184040741 41 CCAGAGGGATTGCCACATATCAGTGACGTGGTGCTGGACAA CCAGAGGGATTGTCACATATCAGTGACGTGGTGCTGGACAA < 41bp 1 0.658051802658116 1 0.35762956738472 experiment 0.683896394683769 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184040721 chr3:184040713 nonsynonymous SNV 0.993 3 13 hm5C_associated_SNPs_30341 0 0 1 0 1 EIF4G1 chr3:184040742 5'GT 184040742 Upstream 30bp
chr19 50733853 50733853 1 + C T LUSC 50733861 + 50733841 50733881 41 TTCTACCAGCTGCTGGGGGGCGCTGGAGAGCAGCTCAAAGG TTCTACCAGCTGTTGGGGGGCGCTGGAGAGCAGCTCAAAGG < 41bp 1 0.293351486449318 1 0.451700270175934 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50733861 chr19:50733853 synonymous SNV . 0 13 hm5C_associated_SNPs_30342 0 0 0 0 2 MYH14 chr19:50733782 3'AG 50733782 Downstream 72bp
chr19 50733853 50733853 1 + C T LUSC 50733861 + 50733841 50733881 41 TTCTACCAGCTGCTGGGGGGCGCTGGAGAGCAGCTCAAAGG TTCTACCAGCTGTTGGGGGGCGCTGGAGAGCAGCTCAAAGG < 41bp 1 0.293351486449318 1 0.451700270175934 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50733861 chr19:50733853 synonymous SNV . 0 13 hm5C_associated_SNPs_30342 0 0 0 0 2 MYH14 chr19:50733880 5'GT 50733880 Upstream 28bp
chr18 74622050 74622050 1 + C T LUSC 74622068 + 74622048 74622088 41 CTCTGCGAGGGCACGTAGACCAGTTTGAAGAGCAGAGCCCT CTTTGCGAGGGCACGTAGACCAGTTTGAAGAGCAGAGCCCT < 41bp 1 0.350841968819789 1 0.35276997089386 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74622068 chr18:74622050 synonymous SNV . 0 3 hm5C_associated_SNPs_30343 0 0 1 0 2 ZNF236 chr18:74622024 3'AG 74622024 Downstream 27bp
chr18 74622050 74622050 1 + C T LUSC 74622068 + 74622048 74622088 41 CTCTGCGAGGGCACGTAGACCAGTTTGAAGAGCAGAGCCCT CTTTGCGAGGGCACGTAGACCAGTTTGAAGAGCAGAGCCCT < 41bp 1 0.350841968819789 1 0.35276997089386 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74622068 chr18:74622050 synonymous SNV . 0 3 hm5C_associated_SNPs_30343 0 0 1 0 2 ZNF236 chr18:74622125 5'GT 74622125 Upstream 76bp
chr2 236877234 236877234 1 + T A LUSC 236877245 + 236877225 236877265 41 ACTAGCAACTTCAAAGCCGACGGCCTGTCCGGCACTGCTGA ACTAGCAACATCAAAGCCGACGGCCTGTCCGGCACTGCTGA < 41bp 1 0.139229914557481 1 0.500005424022675 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236877245 chr2:236877234 nonsynonymous SNV 0.999 1 10 hm5C_associated_SNPs_30344 0 0 1 0 1 AGAP1 chr2:236877267 5'GT 236877267 Upstream 34bp
chr2 236877234 236877234 1 + T A LUSC 236877249 + 236877229 236877269 41 GCAACTTCAAAGCCGACGGCCTGTCCGGCACTGCTGAAGGT GCAACATCAAAGCCGACGGCCTGTCCGGCACTGCTGAAGGT < 41bp 1 0.0413203413126492 1 0.220472484827042 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236877249 chr2:236877234 nonsynonymous SNV 0.999 1 6 hm5C_associated_SNPs_30345 0 0 1 0 1 AGAP1 chr2:236877267 5'GT 236877267 Upstream 34bp
chr11 73102251 73102251 1 + G T LUSC 73102245 + 73102225 73102265 41 TCAACCATGTTCCTGGGCACCTCTGGGTACTCATGGCTGTG TCAACCATGTTCCTGGGCACCTCTGGTTACTCATGGCTGTG < 41bp 1 0.270501824405211 1 0.199500679969788 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RELT ENSG00000054967 CDS Human protein_coding chr11:73102245 chr11:73102251 nonsynonymous SNV 0.034 2 27 hm5C_associated_SNPs_30347 0 0 1 0 2 RELT chr11:73102189 3'AG 73102189 Downstream 63bp
chr11 73102251 73102251 1 + G T LUSC 73102245 + 73102225 73102265 41 TCAACCATGTTCCTGGGCACCTCTGGGTACTCATGGCTGTG TCAACCATGTTCCTGGGCACCTCTGGTTACTCATGGCTGTG < 41bp 1 0.270501824405211 1 0.199500679969788 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RELT ENSG00000054967 CDS Human protein_coding chr11:73102245 chr11:73102251 nonsynonymous SNV 0.034 2 27 hm5C_associated_SNPs_30347 0 0 1 0 2 RELT chr11:73102268 5'GT 73102268 Upstream 18bp
chr19 34292106 34292106 1 + G T LUSC 34292109 + 34292089 34292129 41 CCGGCTGTCTCTCACCCGGTCGCCTGTGTCTCCCCTGGCTG CCGGCTGTCTCTCACCCTGTCGCCTGTGTCTCCCCTGGCTG < 41bp 1 0.687418545116107 1 0.171174257993698 experiment 0.625162909767787 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34292109 chr19:34292106 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_30348 0 0 1 0 1 KCTD15 chr19:34292072 3'AG 34292072 Downstream 35bp
chr12 101720957 101720957 1 + G T LUSC 101720976 + 101720956 101720996 41 GGGACCCAACCTGAGGAGATCCAGATATTCTTAGACCTGCT GTGACCCAACCTGAGGAGATCCAGATATTCTTAGACCTGCT < 41bp 1 0.332534627609708 1 0.325878441333771 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101720976 chr12:101720957 nonsynonymous SNV 0.800 3 2 hm5C_associated_SNPs_30349 0 0 1 0 2 UTP20 chr12:101720859 3'AG 101720859 Downstream 99bp
chr12 101720957 101720957 1 + G T LUSC 101720976 + 101720956 101720996 41 GGGACCCAACCTGAGGAGATCCAGATATTCTTAGACCTGCT GTGACCCAACCTGAGGAGATCCAGATATTCTTAGACCTGCT < 41bp 1 0.332534627609708 1 0.325878441333771 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101720976 chr12:101720957 nonsynonymous SNV 0.800 3 2 hm5C_associated_SNPs_30349 0 0 1 0 2 UTP20 chr12:101721025 5'GT 101721025 Upstream 69bp
chr8 77619845 77619845 1 + C A LUSC 77619825 + 77619805 77619845 41 TCCGGCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCC TCCGGCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCA < 41bp 1 0.198927907327005 1 0.507720589637756 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77619825 chr8:77619845 synonymous SNV . 0 41 hm5C_associated_SNPs_30351 0 0 0 0 1 ZFHX4 chr8:77619781 3'AG 77619781 Downstream 65bp
chr2 109400061 109400061 1 + A G MESO 109400063 + 109400043 109400083 41 TTTTTTCAGGGAGGAGATATCACCAAACATGATGGAACAGG TTTTTTCAGGGAGGAGATGTCACCAAACATGATGGAACAGG < 41bp 1 0.600238850872754 1 0.44956761598587 experiment 0.799522298254492 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109400063 chr2:109400061 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_30353 0 0 1 0 1 RANBP2 chr2:109400052 3'AG 109400052 Downstream 10bp
chr6 43188276 43188276 1 + C A MESO 43188295 + 43188275 43188315 41 CCCGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC CACGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC < 41bp 1 0.464763581344502 1 0.415482938289642 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188295 chr6:43188276 nonsynonymous SNV 0.617 0 2 hm5C_associated_SNPs_30354 0 0 0 0 2 CUL9 chr6:43188197 3'AG 43188197 Downstream 80bp
chr6 43188276 43188276 1 + C A MESO 43188295 + 43188275 43188315 41 CCCGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC CACGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC < 41bp 1 0.464763581344502 1 0.415482938289642 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188295 chr6:43188276 nonsynonymous SNV 0.617 0 2 hm5C_associated_SNPs_30354 0 0 0 0 2 CUL9 chr6:43188337 5'GT 43188337 Upstream 62bp
chr2 74154166 74154166 1 + C G MESO 74154149 + 74154129 74154169 41 GCCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAA GCCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATGGAA < 41bp 1 0.662747279222574 1 0.21700257062912 experiment 0.674505441554852 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154149 chr2:74154166 nonsynonymous SNV 0.998 4 38 hm5C_associated_SNPs_30361 0 0 1 1 1 DGUOK chr2:74154179 5'GT 74154179 Upstream 14bp
chr2 74154166 74154166 1 + C G MESO 74154151 + 74154131 74154171 41 CTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAAGG CTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATGGAAGG < 41bp 1 0.734297436452959 1 0.42449963092804 experiment 0.531405127094082 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154151 chr2:74154166 nonsynonymous SNV 0.998 4 36 hm5C_associated_SNPs_30362 0 0 1 1 1 DGUOK chr2:74154179 5'GT 74154179 Upstream 14bp
chr2 74154166 74154166 1 + C G MESO 74154152 + 74154132 74154172 41 TGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAAGGC TGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATGGAAGGC < 41bp 1 0.749234405799404 1 0.631132006645203 experiment 0.501531188401191 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154152 chr2:74154166 nonsynonymous SNV 0.998 4 35 hm5C_associated_SNPs_30363 0 0 1 1 1 DGUOK chr2:74154179 5'GT 74154179 Upstream 14bp
chr2 219616512 219616512 1 + C A MESO 219616527 + 219616507 219616547 41 TGACCCAGAAAATTCCTGATCAGGTAGGAGATTGGTCTTCC TGACCAAGAAAATTCCTGATCAGGTAGGAGATTGGTCTTCC < 41bp 1 0.492433249287894 1 0.47981658577919 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219616527 chr2:219616512 nonsynonymous SNV 0.998 0 6 hm5C_associated_SNPs_30364 0 0 1 0 2 TTLL4 chr2:219616427 3'AG 219616427 Downstream 86bp
chr2 219616512 219616512 1 + C A MESO 219616527 + 219616507 219616547 41 TGACCCAGAAAATTCCTGATCAGGTAGGAGATTGGTCTTCC TGACCAAGAAAATTCCTGATCAGGTAGGAGATTGGTCTTCC < 41bp 1 0.492433249287894 1 0.47981658577919 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219616527 chr2:219616512 nonsynonymous SNV 0.998 0 6 hm5C_associated_SNPs_30364 0 0 1 0 2 TTLL4 chr2:219616529 5'GT 219616529 Upstream 18bp
chr12 132334405 132334405 1 + C T MESO 132334394 + 132334374 132334414 41 ATAACGTAGAGGAAGGATACCCGCGCCCCGTCTCCGACTTC ATAACGTAGAGGAAGGATACCCGCGCCCCGTTTCCGACTTC < 41bp 1 0.281753905477645 1 0.101599991321564 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MMP17 ENSG00000198598 CDS Human protein_coding chr12:132334394 chr12:132334405 synonymous SNV . 0 32 hm5C_associated_SNPs_30367 0 0 1 0 1 MMP17 chr12:132334347 3'AG 132334347 Downstream 59bp
chr2 207636934 207636934 1 + A G MESO 207636939 + 207636919 207636959 41 TGTCCTTTAAGAATAATGATCAACATATTGCAGTCCTGCAA TGTCCTTTAAGAATAGTGATCAACATATTGCAGTCCTGCAA < 41bp 1 0.663559016999133 1 0.418241441249847 experiment 0.672881966001735 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207636939 chr2:207636934 nonsynonymous SNV 0.951 1 16 hm5C_associated_SNPs_30371 0 0 1 0 1 FASTKD2 chr2:207636905 3'AG 207636905 Downstream 30bp
chr17 48551148 48551148 1 + C T MESO 48551147 + 48551127 48551167 41 AGGACTTCTTTCACACACACCCGAAGGTGCAGGAAGTGCAG AGGACTTCTTTCACACACACCTGAAGGTGCAGGAAGTGCAG < 41bp 1 0.6772742261827 1 0.325710594654083 experiment 0.645451547634601 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48551147 chr17:48551148 nonsynonymous SNV 0.959 3 22 hm5C_associated_SNPs_30372 0 0 0 0 1 ACSF2 chr17:48551167 5'GT 48551167 Upstream 20bp
chr5 145641108 145641108 1 + C A MESO 145641091 + 145641071 145641111 41 AGGTTGCTTTTAAGGGTGACCCAGAAGCAGCCCTAATCCAA AGGTTGCTTTTAAGGGTGACCCAGAAGCAGCCCTAATACAA < 41bp 1 0.397710370227993 1 0.438653737306595 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM27 ENSG00000091009 CDS Human protein_coding chr5:145641091 chr5:145641108 synonymous SNV . 0 38 hm5C_associated_SNPs_30373 0 0 1 0 1 RBM27 chr5:145641073 3'AG 145641073 Downstream 36bp
chr19 6746056 6746056 1 + T C MESO 6746043 + 6746023 6746063 41 CCGGCCCCCGCCGGTAGCCTCGCCCCCCACCCCTCTCCCCC CCGGCCCCCGCCGGTAGCCTCGCCCCCCACCCCCCTCCCCC < 41bp 1 0.498194861737618 1 0.510723471641541 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6746043 chr19:6746056 nonsynonymous SNV 0.986 1 34 hm5C_associated_SNPs_30374 0 0 1 0 1 TRIP10 chr19:6746040 3'AG 6746040 Downstream 17bp
chr8 121301876 121301876 1 + C G MESO 121301861 + 121301841 121301881 41 ACCTAGCTACACATTGTTGTCAGTGAGACTTTGGTCAAAGT ACCTAGCTACACATTGTTGTCAGTGAGACTTTGGTGAAAGT < 41bp 1 0.168534773972143 1 0.137834489345551 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121301861 chr8:121301876 synonymous SNV . 0 36 hm5C_associated_SNPs_30376 0 0 0 0 1 COL14A1 chr8:121301847 3'AG 121301847 Downstream 30bp
chr3 49011170 49011170 1 + G A MESO 49011181 + 49011161 49011201 41 CCACAGACTGTGCCACAATCCGGAAATGGCTCACGAAGTGT CCACAGACTATGCCACAATCCGGAAATGGCTCACGAAGTGT < 41bp 1 0.795881031544519 1 0.823307037353516 experiment 0.408237936910962 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARIH2 ENSG00000177479 CDS Human protein_coding chr3:49011181 chr3:49011170 nonsynonymous SNV 0.985 5 10 hm5C_associated_SNPs_30377 0 0 1 0 2 ARIH2 chr3:49011132 3'AG 49011132 Downstream 39bp
chr3 49011170 49011170 1 + G A MESO 49011181 + 49011161 49011201 41 CCACAGACTGTGCCACAATCCGGAAATGGCTCACGAAGTGT CCACAGACTATGCCACAATCCGGAAATGGCTCACGAAGTGT < 41bp 1 0.795881031544519 1 0.823307037353516 experiment 0.408237936910962 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARIH2 ENSG00000177479 CDS Human protein_coding chr3:49011181 chr3:49011170 nonsynonymous SNV 0.985 5 10 hm5C_associated_SNPs_30377 0 0 1 0 2 ARIH2 chr3:49011249 5'GT 49011249 Upstream 80bp
chr16 69951761 69951761 1 + A T MESO 69951752 + 69951732 69951772 41 GCGGAATCAGCTCCAGGGGGCCATGCAGCACTTCAGCCAAA GCGGAATCAGCTCCAGGGGGCCATGCAGCTCTTCAGCCAAA < 41bp 1 0.0505363522023659 1 0.0502464175224304 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control WWP2 ENSG00000198373 CDS Human protein_coding chr16:69951752 chr16:69951761 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_30380 0 0 0 0 1 WWP2 chr16:69951786 5'GT 69951786 Upstream 26bp
chr11 66033984 66033984 1 + G A MESO 66034001 + 66033981 66034021 41 TGGGCACTGGGCAGCTGCGGCCGGGGCTGCATGCGTGCTGC TGGACACTGGGCAGCTGCGGCCGGGGCTGCATGCGTGCTGC < 41bp 1 0.710100586043028 1 0.765784502029419 experiment 0.579798827913945 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC2 ENSG00000174996 CDS Human protein_coding chr11:66034001 chr11:66033984 nonsynonymous SNV 0.024 2 4 hm5C_associated_SNPs_30383 0 0 1 0 1 KLC2 chr11:66033904 3'AG 66033904 Downstream 81bp
chr16 2511180 2511180 1 + C T MESO 2511197 + 2511177 2511217 41 CATCCGCTGCTCCTCAGGCCCCAGAAGCCTTCACACTCAAG CATTCGCTGCTCCTCAGGCCCCAGAAGCCTTCACACTCAAG < 41bp 1 0.263935222288914 1 0.28046703338623 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2511197 chr16:2511180 nonsynonymous SNV 0.000 1 4 hm5C_associated_SNPs_30386 0 0 0 0 1 C16orf59 chr16:2511225 5'GT 2511225 Upstream 46bp
chr19 58772963 58772963 1 + C T MESO 58772944 + 58772924 58772964 41 AGAAGTGGCCCTGGAGAGACCCCCTTCAGATGTGAGGAACG AGAAGTGGCCCTGGAGAGACCCCCTTCAGATGTGAGGAATG < 41bp 1 0.261003985073684 1 0.156626015901566 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58772944 chr19:58772963 nonsynonymous SNV 0.000 0 40 hm5C_associated_SNPs_30388 0 0 1 0 1 ZNF544 chr19:58772922 3'AG 58772922 Downstream 42bp
chr1 22336262 22336262 1 + C T MESO 22336263 + 22336243 22336283 41 TGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGG TGGCAGGTCCACGGTGTGATCAGCTTTGTTTCTGCCTTTGG < 41bp 1 0.703319536352522 1 0.212827801704407 experiment 0.593360927294955 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336263 chr1:22336262 nonsynonymous SNV 0.977 4 20 hm5C_associated_SNPs_30389 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 89bp
chr1 22336262 22336262 1 + C T MESO 22336266 + 22336246 22336286 41 CAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTG CAGGTCCACGGTGTGATCAGCTTTGTTTCTGCCTTTGGCTG < 41bp 1 0.170501037529515 1 0.0690505802631378 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336266 chr1:22336262 nonsynonymous SNV 0.977 4 17 hm5C_associated_SNPs_30390 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 89bp
chr1 22336262 22336262 1 + C T MESO 22336274 + 22336254 22336294 41 CGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCA CGGTGTGATCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCA < 41bp 1 0.585367014865942 1 0.0718128979206085 experiment 0.829265970268116 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336274 chr1:22336262 nonsynonymous SNV 0.977 4 9 hm5C_associated_SNPs_30391 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 89bp
chr1 22336262 22336262 1 + C T MESO 22336277 + 22336257 22336297 41 TGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCT TGTGATCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCT < 41bp 1 0.0482196429142676 1 0.017286479473114 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336277 chr1:22336262 nonsynonymous SNV 0.977 4 6 hm5C_associated_SNPs_30392 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 89bp
chr1 22336262 22336262 1 + C T MESO 22336278 + 22336258 22336298 41 GTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCTG GTGATCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCTG < 41bp 1 0.302678057370638 1 0.0775282084941864 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336278 chr1:22336262 nonsynonymous SNV 0.977 4 5 hm5C_associated_SNPs_30393 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 89bp
chr16 457424 457424 1 + G A MESO 457427 + 457407 457447 41 TCTTTACCTGGCTTCTAGGCCGCCAGGAAGCTGGCTGGGGC TCTTTACCTGGCTTCTAAGCCGCCAGGAAGCTGGCTGGGGC < 41bp 1 0.792171859372023 1 0.695564210414886 experiment 0.415656281255954 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DECR2 ENSG00000103202;ENSG00000242612 splicing Human other chr16:457427 chr16:457424 . 0.963 0 18 hm5C_associated_SNPs_30394 0 0 1 0 1 DECR2 chr16:457380 3'AG 457380 Downstream 45bp
chr17 60768383 60768383 1 + C T MESO 60768363 + 60768343 60768383 41 TGAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGC TGAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGT < 41bp 1 0.0265555477537032 1 0.165976941585541 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768363 chr17:60768383 synonymous SNV . 0 41 hm5C_associated_SNPs_30400 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 74bp
chr17 60768383 60768383 1 + C T MESO 60768364 + 60768344 60768384 41 GAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGCA GAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGTA < 41bp 1 0.139997938090884 1 0.552106618881226 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768364 chr17:60768383 synonymous SNV . 0 40 hm5C_associated_SNPs_30401 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 74bp
chr17 60768383 60768383 1 + C T MESO 60768365 + 60768345 60768385 41 AACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGCAT AACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGTAT < 41bp 1 0.22061854624745 1 0.760306835174561 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768365 chr17:60768383 synonymous SNV . 0 39 hm5C_associated_SNPs_30402 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 74bp
chr17 60768383 60768383 1 + C T MESO 60768377 + 60768357 60768397 41 TGGGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAA TGGGGGCCCCCGGGCTTGGGCCCCAGTATGCTGAGCCACAA < 41bp 1 0.484420377853201 1 0.176840007305145 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768377 chr17:60768383 synonymous SNV . 0 27 hm5C_associated_SNPs_30403 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 74bp
chr17 60768383 60768383 1 + C T MESO 60768378 + 60768358 60768398 41 GGGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAAC GGGGGCCCCCGGGCTTGGGCCCCAGTATGCTGAGCCACAAC < 41bp 1 0.162746930446427 1 0.224860161542892 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768378 chr17:60768383 synonymous SNV . 0 26 hm5C_associated_SNPs_30404 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 74bp
chr17 60768383 60768383 1 + C T MESO 60768379 + 60768359 60768399 41 GGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACA GGGGCCCCCGGGCTTGGGCCCCAGTATGCTGAGCCACAACA < 41bp 1 0.114618843866322 1 0.249751776456833 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768379 chr17:60768383 synonymous SNV . 0 25 hm5C_associated_SNPs_30405 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 74bp
chr17 60768383 60768383 1 + C T MESO 60768380 + 60768360 60768400 41 GGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACAG GGGCCCCCGGGCTTGGGCCCCAGTATGCTGAGCCACAACAG < 41bp 1 0.430530160741348 1 0.398550450801849 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768380 chr17:60768383 synonymous SNV . 0 24 hm5C_associated_SNPs_30406 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 74bp
chr11 73360064 73360064 1 + C T MESO 73360060 + 73360040 73360080 41 CGTGGCTCCTCTGACAGGTCCCGCCTGACTCCGCTCTGGAA CGTGGCTCCTCTGACAGGTCCCGCTTGACTCCGCTCTGGAA < 41bp 1 0.1449712076155 1 0.0519609153270721 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHB1 ENSG00000021300 CDS Human protein_coding chr11:73360060 chr11:73360064 nonsynonymous SNV 0.891 1 25 hm5C_associated_SNPs_30407 0 0 1 0 1 PLEKHB1 chr11:73360057 3'AG 73360057 Downstream 8bp
chr21 47978253 47978253 1 + C T MESO 47978252 + 47978232 47978272 41 AAGGACCTGGGCCTGCCGGCCCGCGCCGTAAGCACCACGTT AAGGACCTGGGCCTGCCGGCCTGCGCCGTAAGCACCACGTT < 41bp 1 0.555143702890129 1 0.767519235610962 experiment 0.889712594219741 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47978252 chr21:47978253 nonsynonymous SNV 0.131 4 22 hm5C_associated_SNPs_30408 0 0 1 0 1 DIP2A chr21:47978306 5'GT 47978306 Upstream 54bp
chr2 121554980 121554980 1 + G A MESO 121554962 + 121554942 121554982 41 AAAAGTGGGATCCTGGAGGCCGCTGGCTTCCCCGACCCGGG AAAAGTGGGATCCTGGAGGCCGCTGGCTTCCCCGACCCAGG < 41bp 1 0.275873159530938 1 0.516095757484436 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GLI2 ENSG00000074047 CDS Human protein_coding chr2:121554962 chr2:121554980 synonymous SNV . 0 39 hm5C_associated_SNPs_30409 0 0 0 0 1 GLI2 chr2:121555044 5'GT 121555044 Upstream 65bp
chr22 44335969 44335969 1 + C T MESO 44335988 + 44335968 44336008 41 ACCCTGCCTGTGGAATCTGCCATTGCGATTGTCCAGAGGTG ATCCTGCCTGTGGAATCTGCCATTGCGATTGTCCAGAGGTG < 41bp 1 0.133464342183967 1 0.105139762163162 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44335988 chr22:44335969 nonsynonymous SNV 0.291 2 2 hm5C_associated_SNPs_30410 0 0 1 0 2 PNPLA3 chr22:44335873 3'AG 44335873 Downstream 97bp
chr22 44335969 44335969 1 + C T MESO 44335988 + 44335968 44336008 41 ACCCTGCCTGTGGAATCTGCCATTGCGATTGTCCAGAGGTG ATCCTGCCTGTGGAATCTGCCATTGCGATTGTCCAGAGGTG < 41bp 1 0.133464342183967 1 0.105139762163162 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44335988 chr22:44335969 nonsynonymous SNV 0.291 2 2 hm5C_associated_SNPs_30410 0 0 1 0 2 PNPLA3 chr22:44336005 5'GT 44336005 Upstream 37bp
chr10 115485156 115485156 1 + G A OV 115485145 + 115485125 115485165 41 TGAAGAGGACCATACAAATGCCGCCTGCTTCGCCTGCATCC TGAAGAGGACCATACAAATGCCGCCTGCTTCACCTGCATCC < 41bp 1 0.23542097786475 1 0.107437163591385 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115485145 chr10:115485156 nonsynonymous SNV 0.996 3 32 hm5C_associated_SNPs_30411 0 0 1 0 2 CASP7 chr10:115485121 3'AG 115485121 Downstream 36bp
chr10 115485156 115485156 1 + G A OV 115485145 + 115485125 115485165 41 TGAAGAGGACCATACAAATGCCGCCTGCTTCGCCTGCATCC TGAAGAGGACCATACAAATGCCGCCTGCTTCACCTGCATCC < 41bp 1 0.23542097786475 1 0.107437163591385 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115485145 chr10:115485156 nonsynonymous SNV 0.996 3 32 hm5C_associated_SNPs_30411 0 0 1 0 2 CASP7 chr10:115485188 5'GT 115485188 Upstream 33bp
chr17 80193916 80193916 1 + C A OV 80193913 + 80193893 80193933 41 GGCCGTGGTGGACGAGGGCCCCACAGGCGTCAAGGCCCCTG GGCCGTGGTGGACGAGGGCCCCAAAGGCGTCAAGGCCCCTG < 41bp 1 0.574131888896664 1 0.156770437955856 experiment 0.851736222206673 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC16A3 ENSG00000141526 CDS Human protein_coding chr17:80193913 chr17:80193916 nonsynonymous SNV 0.732 0 24 hm5C_associated_SNPs_30412 0 0 1 0 1 SLC16A3 chr17:80193859 3'AG 80193859 Downstream 58bp
chr14 93681610 93681610 1 + A T OV 93681613 + 93681593 93681633 41 TTCTTTTTTGTGGGCTTATGCTGCACAATTGGCAGGTAGGT TTCTTTTTTGTGGGCTTTTGCTGCACAATTGGCAGGTAGGT < 41bp 1 0.747673721869849 1 0.426943868398666 experiment 0.504652556260301 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UBR7 ENSG00000012963 CDS Human protein_coding chr14:93681613 chr14:93681610 nonsynonymous SNV 0.997 3 18 hm5C_associated_SNPs_30416 0 0 1 0 2 UBR7 chr14:93681522 3'AG 93681522 Downstream 89bp
chr14 93681610 93681610 1 + A T OV 93681613 + 93681593 93681633 41 TTCTTTTTTGTGGGCTTATGCTGCACAATTGGCAGGTAGGT TTCTTTTTTGTGGGCTTTTGCTGCACAATTGGCAGGTAGGT < 41bp 1 0.747673721869849 1 0.426943868398666 experiment 0.504652556260301 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UBR7 ENSG00000012963 CDS Human protein_coding chr14:93681613 chr14:93681610 nonsynonymous SNV 0.997 3 18 hm5C_associated_SNPs_30416 0 0 1 0 2 UBR7 chr14:93681627 5'GT 93681627 Upstream 18bp
chr10 31812925 31812925 1 + C G OV 31812931 + 31812911 31812951 41 GAATGACTCTGATTCTACACCGCCCAAAAAGAAAATGCGGA GAATGACTCTGATTGTACACCGCCCAAAAAGAAAATGCGGA < 41bp 1 0.24428328660392 1 0.234968155622482 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZEB1 ENSG00000148516 CDS Human protein_coding chr10:31812931 chr10:31812925 nonsynonymous SNV 0.999 0 15 hm5C_associated_SNPs_30417 0 0 0 0 1 ZEB1 chr10:31812861 3'AG 31812861 Downstream 65bp
chr12 53433463 53433463 1 + A G OV 53433478 + 53433458 53433498 41 CAAAGAAACCTGAGGAAAATCCAGCTTCCGTAAGTGTTGAA CAAAGGAACCTGAGGAAAATCCAGCTTCCGTAAGTGTTGAA < 41bp 1 0.290324728177156 1 0.305705666542053 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53433478 chr12:53433463 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_30418 0 0 0 0 2 EIF4B chr12:53433414 3'AG 53433414 Downstream 50bp
chr12 53433463 53433463 1 + A G OV 53433478 + 53433458 53433498 41 CAAAGAAACCTGAGGAAAATCCAGCTTCCGTAAGTGTTGAA CAAAGGAACCTGAGGAAAATCCAGCTTCCGTAAGTGTTGAA < 41bp 1 0.290324728177156 1 0.305705666542053 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53433478 chr12:53433463 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_30418 0 0 0 0 2 EIF4B chr12:53433486 5'GT 53433486 Upstream 24bp
chr7 44804967 44804967 1 + G A OV 44804952 + 44804932 44804972 41 AGCTCTGACTATGAGGAGATCACCATCGACCCCACGTGCAG AGCTCTGACTATGAGGAGATCACCATCGACCCCACATGCAG < 41bp 1 0.635171244689567 1 0.067868560552597 experiment 0.729657510620866 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44804952 chr7:44804967 synonymous SNV . 0 36 hm5C_associated_SNPs_30419 0 0 1 0 1 ZMIZ2 chr7:44804934 3'AG 44804934 Downstream 34bp
chr20 60708486 60708486 1 + C G OV 60708483 + 60708463 60708503 41 TGGGACCACCCGTCGCAACCCCACTTCCCACAGGGCCGGGA TGGGACCACCCGTCGCAACCCCAGTTCCCACAGGGCCGGGA < 41bp 1 0.487450203522708 1 0.069589763879776 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LSM14B ENSG00000149657 CDS Human protein_coding chr20:60708483 chr20:60708486 nonsynonymous SNV 0.990 0 24 hm5C_associated_SNPs_30420 0 0 1 0 1 LSM14B chr20:60708531 5'GT 60708531 Upstream 46bp
chr17 78081608 78081608 1 + A T OV 78081601 + 78081581 78081621 41 GTCTCCTGCATGTCCCAGCCCGGTGCGAACCTCTACGGGTC GTCTCCTGCATGTCCCAGCCCGGTGCGTACCTCTACGGGTC < 41bp 1 0.493043692933063 1 0.441283524036407 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78081601 chr17:78081608 nonsynonymous SNV 0.651 5 28 hm5C_associated_SNPs_30421 0 0 1 0 2 GAA chr17:78081599 3'AG 78081599 Downstream 10bp
chr17 78081608 78081608 1 + A T OV 78081601 + 78081581 78081621 41 GTCTCCTGCATGTCCCAGCCCGGTGCGAACCTCTACGGGTC GTCTCCTGCATGTCCCAGCCCGGTGCGTACCTCTACGGGTC < 41bp 1 0.493043692933063 1 0.441283524036407 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78081601 chr17:78081608 nonsynonymous SNV 0.651 5 28 hm5C_associated_SNPs_30421 0 0 1 0 2 GAA chr17:78081695 5'GT 78081695 Upstream 88bp
chr17 37676222 37676222 1 + G A OV 37676240 + 37676220 37676260 41 CAGCACTTGATTTATTGGACCACATGCTGACACTAGATCCT CAACACTTGATTTATTGGACCACATGCTGACACTAGATCCT < 41bp 1 0.125709013427674 1 0.0368230938911438 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDK12 ENSG00000167258 CDS Human protein_coding chr17:37676240 chr17:37676222 nonsynonymous SNV 0.998 4 3 hm5C_associated_SNPs_30423 0 0 1 0 1 CDK12 chr17:37676209 3'AG 37676209 Downstream 14bp
chr3 124456804 124456804 1 + C G OV 124456785 + 124456765 124456805 41 GCACCCAAAGAACTCAGCTTCGGTGCACGTGCAGAGCTGCC GCACCCAAAGAACTCAGCTTCGGTGCACGTGCAGAGCTGGC < 41bp 1 0.386503877125159 1 0.779657959938049 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UMPS ENSG00000114491 CDS Human protein_coding chr3:124456785 chr3:124456804 nonsynonymous SNV 0.990 1 40 hm5C_associated_SNPs_30424 0 0 1 0 1 UMPS chr3:124456762 3'AG 124456762 Downstream 43bp
chr22 39770463 39770463 1 + C A OV 39770450 + 39770430 39770470 41 ATGGCGTGGCCGTGGGCGTGCTCGCCTTCCTCACCTGCCTG ATGGCGTGGCCGTGGGCGTGCTCGCCTTCCTCAACTGCCTG < 41bp 1 0.541026042730758 1 0.102213442325592 experiment 0.917947914538483 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYNGR1 ENSG00000100321 CDS Human protein_coding chr22:39770450 chr22:39770463 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_30425 0 0 1 0 1 SYNGR1 chr22:39770558 5'GT 39770558 Upstream 96bp
chr1 153724880 153724880 1 + C T OV 153724860 + 153724840 153724880 41 AAGATATTATCCATAATCCTCAGGCCTTGAGTCCTCAGTTC AAGATATTATCCATAATCCTCAGGCCTTGAGTCCTCAGTTT < 41bp 1 0.583441973944019 1 0.801113128662109 experiment 0.833116052111963 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout INTS3 ENSG00000143624 CDS Human protein_coding chr1:153724860 chr1:153724880 synonymous SNV . 0 41 hm5C_associated_SNPs_30427 0 0 1 0 1 INTS3 chr1:153724884 5'GT 153724884 Upstream 5bp
chr16 85840440 85840440 1 + C T OV 85840456 + 85840436 85840476 41 TTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAA TTAGTCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAA < 41bp 1 0.78100963982992 1 0.437134861946106 experiment 0.43798072034016 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control COX4I1 ENSG00000131143 CDS Human protein_coding chr16:85840456 chr16:85840440 nonsynonymous SNV 0.044 2 5 hm5C_associated_SNPs_30428 0 0 1 0 1 COX4I1 chr16:85840344 3'AG 85840344 Downstream 97bp
chr12 95877020 95877020 1 + G A OV 95877015 + 95876995 95877035 41 AGATGGCGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAA AGATGGCGATGGAGATGGAGCAACTAGAAAGAAGAAGAAAA < 41bp 1 0.299057713578877 1 0.321467399597168 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout METAP2 ENSG00000111142 CDS Human protein_coding chr12:95877015 chr12:95877020 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_30429 0 0 1 1 2 METAP2 chr12:95876991 3'AG 95876991 Downstream 30bp
chr12 95877020 95877020 1 + G A OV 95877015 + 95876995 95877035 41 AGATGGCGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAA AGATGGCGATGGAGATGGAGCAACTAGAAAGAAGAAGAAAA < 41bp 1 0.299057713578877 1 0.321467399597168 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout METAP2 ENSG00000111142 CDS Human protein_coding chr12:95877015 chr12:95877020 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_30429 0 0 1 1 2 METAP2 chr12:95877056 5'GT 95877056 Upstream 37bp
chr12 95877020 95877020 1 + G A OV 95877018 + 95876998 95877038 41 TGGCGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAAAGA TGGCGATGGAGATGGAGCAACTAGAAAGAAGAAGAAAAAGA < 41bp 1 0.747459200087246 1 0.442382544279099 experiment 0.505081599825507 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout METAP2 ENSG00000111142 CDS Human protein_coding chr12:95877018 chr12:95877020 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_30430 0 0 1 1 2 METAP2 chr12:95876991 3'AG 95876991 Downstream 30bp
chr12 95877020 95877020 1 + G A OV 95877018 + 95876998 95877038 41 TGGCGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAAAGA TGGCGATGGAGATGGAGCAACTAGAAAGAAGAAGAAAAAGA < 41bp 1 0.747459200087246 1 0.442382544279099 experiment 0.505081599825507 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout METAP2 ENSG00000111142 CDS Human protein_coding chr12:95877018 chr12:95877020 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_30430 0 0 1 1 2 METAP2 chr12:95877056 5'GT 95877056 Upstream 37bp
chr6 27806753 27806753 1 + G A OV 27806746 + 27806726 27806766 41 AGACGGCCGTGCGCCTGCTGCTGCCAGGGGAGCTGGCCAAG AGACGGCCGTGCGCCTGCTGCTGCCAGAGGAGCTGGCCAAG < 41bp 1 0.606388363534348 1 0.259109437465668 experiment 0.787223272931303 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806746 chr6:27806753 nonsynonymous SNV 0.970 3 28 hm5C_associated_SNPs_30432 0 0 1 0 2 HIST1H2BN chr6:27806816 5'GT 27806816 Upstream 64bp
chr6 27806753 27806753 1 + G A OV 27806746 + 27806726 27806766 41 AGACGGCCGTGCGCCTGCTGCTGCCAGGGGAGCTGGCCAAG AGACGGCCGTGCGCCTGCTGCTGCCAGAGGAGCTGGCCAAG < 41bp 1 0.606388363534348 1 0.259109437465668 experiment 0.787223272931303 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806746 chr6:27806753 nonsynonymous SNV 0.970 3 28 hm5C_associated_SNPs_30432 0 0 1 0 2 HIST1H2BN chr6:27806843 5'GT 27806843 Upstream 91bp
chr12 123087765 123087765 1 + C T OV 123087749 + 123087729 123087769 41 TATAGTCAACCCAGAGTGGGCTGTAGCTATTGCCATCAGCC TATAGTCAACCCAGAGTGGGCTGTAGCTATTGCCATTAGCC < 41bp 1 0.274374444707651 1 0.140263319015503 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123087749 chr12:123087765 synonymous SNV . 0 37 hm5C_associated_SNPs_30433 0 0 1 0 1 KNTC1 chr12:123087790 5'GT 123087790 Upstream 26bp
chr12 123087765 123087765 1 + C T OV 123087775 + 123087755 123087795 41 CTATTGCCATCAGCCTTGCCCAGGATATCCCTGAAGGTATG CTATTGCCATTAGCCTTGCCCAGGATATCCCTGAAGGTATG < 41bp 1 0.586275065351658 1 0.630870640277863 experiment 0.827449869296683 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123087775 chr12:123087765 synonymous SNV . 0 11 hm5C_associated_SNPs_30434 0 0 1 0 1 KNTC1 chr12:123087790 5'GT 123087790 Upstream 26bp
chr20 57484839 57484839 1 + C G OV 57484828 + 57484808 57484848 41 CCAACCGCCTGCAGGAGGCTCTGAACCTCTTCAAGAGCATC CCAACCGCCTGCAGGAGGCTCTGAACCTCTTGAAGAGCATC < 41bp 1 0.394029923604322 1 0.164883702993393 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNAS ENSG00000087460 CDS Human protein_coding chr20:57484828 chr20:57484839 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_30436 0 0 1 0 1 GNAS chr20:57484859 5'GT 57484859 Upstream 21bp
chr16 14041547 14041547 1 + G A OV 14041557 + 14041537 14041577 41 TTCCATCTCTGATCCATCGTCGGGGCATTGACATTGAACCC TTCCATCTCTAATCCATCGTCGGGGCATTGACATTGAACCC < 41bp 1 0.73706279041599 1 0.947102904319763 experiment 0.52587441916802 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ERCC4 ENSG00000175595 CDS Human protein_coding chr16:14041557 chr16:14041547 synonymous SNV . 0 11 hm5C_associated_SNPs_30437 0 0 1 0 1 ERCC4 chr16:14041471 3'AG 14041471 Downstream 77bp
chr9 100412797 100412797 1 + C T OV 100412789 + 100412769 100412809 41 TTGGTTTTCTTTCCAGGGTCCTGTCATGCCAGGGAGTCATT TTGGTTTTCTTTCCAGGGTCCTGTCATGTCAGGGAGTCATT < 41bp 1 0.0647611231870696 1 0.0939666032791138 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100412789 chr9:100412797 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_30438 0 0 0 0 1 NCBP1 chr9:100412882 5'GT 100412882 Upstream 86bp
chr17 45757955 45757955 1 + G T OV 45757956 + 45757936 45757976 41 ATGAATTGTTAACTGAAGGGCGGAGATCGAAGACTAACAAA ATGAATTGTTAACTGAAGGTCGGAGATCGAAGACTAACAAA < 41bp 1 0.493227770190292 1 0.348828375339508 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45757956 chr17:45757955 synonymous SNV . 0 20 hm5C_associated_SNPs_30439 0 0 1 0 2 KPNB1 chr17:45757874 3'AG 45757874 Downstream 82bp
chr17 45757955 45757955 1 + G T OV 45757956 + 45757936 45757976 41 ATGAATTGTTAACTGAAGGGCGGAGATCGAAGACTAACAAA ATGAATTGTTAACTGAAGGTCGGAGATCGAAGACTAACAAA < 41bp 1 0.493227770190292 1 0.348828375339508 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45757956 chr17:45757955 synonymous SNV . 0 20 hm5C_associated_SNPs_30439 0 0 1 0 2 KPNB1 chr17:45758035 5'GT 45758035 Upstream 81bp
chr12 57552345 57552345 1 + C G OV 57552333 + 57552313 57552353 41 CTGGACTTCCACGCTGAGACCGGCTTCATCTACTTTGCCGA CTGGACTTCCACGCTGAGACCGGCTTCATCTAGTTTGCCGA < 41bp 1 0.117729867926037 1 0.430972397327423 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57552333 chr12:57552345 stopgain 1.000 1 33 hm5C_associated_SNPs_30440 0 0 1 0 1 LRP1 chr12:57552421 5'GT 57552421 Upstream 77bp
chr14 64689991 64689991 1 + G A OV 64690010 + 64689990 64690030 41 TGGAGAAGACTGTATTGAAGCTGAAGAAAAGGTGCATGTTA TAGAGAAGACTGTATTGAAGCTGAAGAAAAGGTGCATGTTA < 41bp 1 0.2709344923586 1 0.335269004106522 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64690010 chr14:64689991 nonsynonymous SNV 0.752 3 2 hm5C_associated_SNPs_30442 0 0 1 0 1 SYNE2 chr14:64689907 3'AG 64689907 Downstream 85bp
chr5 92921119 92921119 1 + C T OV 92921110 + 92921090 92921130 41 ACATGCCGTGCCAACAGGAACTGTCCCATCGACCAGCACCA ACATGCCGTGCCAACAGGAACTGTCCCATTGACCAGCACCA < 41bp 1 0.0759836856103022 1 0.172945290803909 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NR2F1 ENSG00000175745 CDS Human protein_coding chr5:92921110 chr5:92921119 synonymous SNV . 0 30 hm5C_associated_SNPs_30444 0 0 1 0 1 NR2F1 chr5:92921192 5'GT 92921192 Upstream 74bp
chr5 92921123 92921123 1 + C T OV 92921110 + 92921090 92921130 41 ACATGCCGTGCCAACAGGAACTGTCCCATCGACCAGCACCA ACATGCCGTGCCAACAGGAACTGTCCCATCGACTAGCACCA < 41bp 1 0.0862957267799983 1 0.173048168420792 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NR2F1 ENSG00000175745 CDS Human protein_coding chr5:92921110 chr5:92921123 stopgain 1.000 1 34 hm5C_associated_SNPs_30445 0 0 1 0 1 NR2F1 chr5:92921192 5'GT 92921192 Upstream 70bp
chr4 42020141 42020141 1 + C T OV 42020143 + 42020123 42020163 41 TACAGCAGAAGGTATAGGCACAGAACTCAAAGCTCCACTTA TACAGCAGAAGGTATAGGTACAGAACTCAAAGCTCCACTTA < 41bp 1 0.70149170268735 1 0.418009370565414 experiment 0.597016594625299 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42020143 chr4:42020141 synonymous SNV . 0 19 hm5C_associated_SNPs_30446 0 0 1 0 2 SLC30A9 chr4:42020128 3'AG 42020128 Downstream 14bp
chr4 42020141 42020141 1 + C T OV 42020143 + 42020123 42020163 41 TACAGCAGAAGGTATAGGCACAGAACTCAAAGCTCCACTTA TACAGCAGAAGGTATAGGTACAGAACTCAAAGCTCCACTTA < 41bp 1 0.70149170268735 1 0.418009370565414 experiment 0.597016594625299 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42020143 chr4:42020141 synonymous SNV . 0 19 hm5C_associated_SNPs_30446 0 0 1 0 2 SLC30A9 chr4:42020187 5'GT 42020187 Upstream 47bp
chr3 155629028 155629028 1 + T A OV 155629040 + 155629020 155629060 41 AGCCAGTCTGTTGAAGAGGCCCTCAAAAAGCTTGGAATTCA AGCCAGTCAGTTGAAGAGGCCCTCAAAAAGCTTGGAATTCA < 41bp 1 0.108401072204845 1 0.0425854921340942 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GMPS ENSG00000163655 CDS Human protein_coding chr3:155629040 chr3:155629028 synonymous SNV . 0 9 hm5C_associated_SNPs_30447 0 0 1 0 1 GMPS chr3:155629068 5'GT 155629068 Upstream 41bp
chr22 24204383 24204383 1 + G A OV 24204381 + 24204361 24204401 41 ACCTCTCTATCATCAATGCCCCGACCTTGGTATGTATCCTC ACCTCTCTATCATCAATGCCCCAACCTTGGTATGTATCCTC < 41bp 1 0.0449471952893063 1 0.03172367811203 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460;ENSG00000251357 CDS Human protein_coding chr22:24204381 chr22:24204383 synonymous SNV . 0 23 hm5C_associated_SNPs_30450 0 0 0 0 2 SLC2A11 chr22:24204291 3'AG 24204291 Downstream 93bp
chr22 24204383 24204383 1 + G A OV 24204381 + 24204361 24204401 41 ACCTCTCTATCATCAATGCCCCGACCTTGGTATGTATCCTC ACCTCTCTATCATCAATGCCCCAACCTTGGTATGTATCCTC < 41bp 1 0.0449471952893063 1 0.03172367811203 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460;ENSG00000251357 CDS Human other chr22:24204381 chr22:24204383 synonymous SNV . 0 23 hm5C_associated_SNPs_30450 0 0 0 0 2 SLC2A11 chr22:24204389 5'GT 24204389 Upstream 7bp
chr22 24204383 24204383 1 + G A OV 24204382 + 24204362 24204402 41 CCTCTCTATCATCAATGCCCCGACCTTGGTATGTATCCTCT CCTCTCTATCATCAATGCCCCAACCTTGGTATGTATCCTCT < 41bp 1 0.122581539827839 1 0.130829364061356 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460;ENSG00000251357 CDS Human protein_coding chr22:24204382 chr22:24204383 synonymous SNV . 0 22 hm5C_associated_SNPs_30451 0 0 0 0 2 SLC2A11 chr22:24204291 3'AG 24204291 Downstream 93bp
chr22 24204383 24204383 1 + G A OV 24204382 + 24204362 24204402 41 CCTCTCTATCATCAATGCCCCGACCTTGGTATGTATCCTCT CCTCTCTATCATCAATGCCCCAACCTTGGTATGTATCCTCT < 41bp 1 0.122581539827839 1 0.130829364061356 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460;ENSG00000251357 CDS Human other chr22:24204382 chr22:24204383 synonymous SNV . 0 22 hm5C_associated_SNPs_30451 0 0 0 0 2 SLC2A11 chr22:24204389 5'GT 24204389 Upstream 7bp
chr22 24204383 24204383 1 + G A OV 24204386 + 24204366 24204406 41 TCTATCATCAATGCCCCGACCTTGGTATGTATCCTCTCTGG TCTATCATCAATGCCCCAACCTTGGTATGTATCCTCTCTGG < 41bp 1 0.597535793507476 1 0.106708407402039 experiment 0.804928412985048 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460;ENSG00000251357 CDS Human protein_coding chr22:24204386 chr22:24204383 synonymous SNV . 0 18 hm5C_associated_SNPs_30452 0 0 0 0 2 SLC2A11 chr22:24204291 3'AG 24204291 Downstream 93bp
chr22 24204383 24204383 1 + G A OV 24204386 + 24204366 24204406 41 TCTATCATCAATGCCCCGACCTTGGTATGTATCCTCTCTGG TCTATCATCAATGCCCCAACCTTGGTATGTATCCTCTCTGG < 41bp 1 0.597535793507476 1 0.106708407402039 experiment 0.804928412985048 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460;ENSG00000251357 CDS Human other chr22:24204386 chr22:24204383 synonymous SNV . 0 18 hm5C_associated_SNPs_30452 0 0 0 0 2 SLC2A11 chr22:24204389 5'GT 24204389 Upstream 7bp
chr7 56129521 56129521 1 + G C OV 56129510 + 56129490 56129530 41 TCAAGCAGAACATTCAGAATCAGGTCAGCTTGTGGGTGTGG TCAAGCAGAACATTCAGAATCAGGTCAGCTTCTGGGTGTGG < 41bp 1 0.575634430824163 1 0.443491965532303 experiment 0.848731138351674 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCT6A ENSG00000146731 CDS Human protein_coding chr7:56129510 chr7:56129521 nonsynonymous SNV 0.994 0 32 hm5C_associated_SNPs_30453 0 0 1 0 2 CCT6A chr7:56129440 3'AG 56129440 Downstream 82bp
chr7 56129521 56129521 1 + G C OV 56129510 + 56129490 56129530 41 TCAAGCAGAACATTCAGAATCAGGTCAGCTTGTGGGTGTGG TCAAGCAGAACATTCAGAATCAGGTCAGCTTCTGGGTGTGG < 41bp 1 0.575634430824163 1 0.443491965532303 experiment 0.848731138351674 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCT6A ENSG00000146731 CDS Human protein_coding chr7:56129510 chr7:56129521 nonsynonymous SNV 0.994 0 32 hm5C_associated_SNPs_30453 0 0 1 0 2 CCT6A chr7:56129542 5'GT 56129542 Upstream 22bp
chr8 56922484 56922484 1 + G A OV 56922491 + 56922471 56922511 41 AACTAATGCCGACGTGATGACCGCCCTGTCCCAGGGCTACA AACTAATGCCGACATGATGACCGCCCTGTCCCAGGGCTACA < 41bp 1 0.186081681612634 1 0.0170888304710388 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56922491 chr8:56922484 nonsynonymous SNV 0.823 5 14 hm5C_associated_SNPs_30455 0 0 1 0 1 LYN chr8:56922467 3'AG 56922467 Downstream 18bp
chr7 91714873 91714873 1 + G A OV 91714856 + 91714836 91714876 41 GGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATAGTGA GGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATAATGA < 41bp 1 0.393096828397151 1 0.157437860965729 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714856 chr7:91714873 nonsynonymous SNV 0.508 0 38 hm5C_associated_SNPs_30461 0 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 65bp
chr7 91714873 91714873 1 + G A OV 91714864 + 91714844 91714884 41 GGTGCTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGG GGTGCTTTCTCTCACTGAGTCTCCCTATAATGATGGAGAGG < 41bp 1 0.201802041452805 1 0.290240287780762 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714864 chr7:91714873 nonsynonymous SNV 0.508 0 30 hm5C_associated_SNPs_30462 0 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 65bp
chr7 91714873 91714873 1 + G A OV 91714867 + 91714847 91714887 41 GCTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGGACC GCTTTCTCTCACTGAGTCTCCCTATAATGATGGAGAGGACC < 41bp 1 0.0173478646141424 1 0.0839990675449371 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714867 chr7:91714873 nonsynonymous SNV 0.508 0 27 hm5C_associated_SNPs_30463 0 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 65bp
chr7 91714873 91714873 1 + G A OV 91714868 + 91714848 91714888 41 CTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGGACCA CTTTCTCTCACTGAGTCTCCCTATAATGATGGAGAGGACCA < 41bp 1 0.192242900319195 1 0.24973052740097 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714868 chr7:91714873 nonsynonymous SNV 0.508 0 26 hm5C_associated_SNPs_30464 0 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 65bp
chr7 91714873 91714873 1 + G A OV 91714891 + 91714871 91714911 41 TAGTGATGGAGAGGACCATTCTATTCAGCAGGTTTCAGAAC TAATGATGGAGAGGACCATTCTATTCAGCAGGTTTCAGAAC < 41bp 1 0.187149025321248 1 0.158417612314224 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714891 chr7:91714873 nonsynonymous SNV 0.508 0 3 hm5C_associated_SNPs_30465 0 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 65bp
chr16 72141619 72141619 1 + C T OV 72141626 + 72141606 72141646 41 ATGCTCATCGTGTCCTGTGACATGGGCTGCAGCTCCGAGAT ATGCTCATCGTGTTCTGTGACATGGGCTGCAGCTCCGAGAT < 41bp 1 0.689483317337063 1 0.286730527877808 experiment 0.621033365325875 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72141626 chr16:72141619 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_30466 0 0 1 0 2 DHX38 chr16:72141544 3'AG 72141544 Downstream 76bp
chr16 72141619 72141619 1 + C T OV 72141626 + 72141606 72141646 41 ATGCTCATCGTGTCCTGTGACATGGGCTGCAGCTCCGAGAT ATGCTCATCGTGTTCTGTGACATGGGCTGCAGCTCCGAGAT < 41bp 1 0.689483317337063 1 0.286730527877808 experiment 0.621033365325875 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72141626 chr16:72141619 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_30466 0 0 1 0 2 DHX38 chr16:72141698 5'GT 72141698 Upstream 80bp
chr5 68425367 68425367 1 + G T OV 68425373 + 68425353 68425393 41 CTGGCCTAAGTACTGGATTTCATGATGTTCTGGCTATGACA CTGGCCTAAGTACTTGATTTCATGATGTTCTGGCTATGACA < 41bp 1 0.545547581300462 1 0.173624485731125 experiment 0.908904837399076 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC30A5 ENSG00000145740 CDS Human protein_coding chr5:68425373 chr5:68425367 stopgain 1.000 1 15 hm5C_associated_SNPs_30467 0 0 1 0 1 SLC30A5 chr5:68425274 3'AG 68425274 Downstream 94bp
chr17 7479928 7479928 1 + G A OV 7479909 + 7479889 7479929 41 TCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGC TCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTAC < 41bp 1 0.12988419285194 1 0.158226490020752 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479909 chr17:7479928 synonymous SNV . 0 40 hm5C_associated_SNPs_30468 0 0 1 0 2 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 87bp
chr17 7479928 7479928 1 + G A OV 7479909 + 7479889 7479929 41 TCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGC TCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTAC < 41bp 1 0.12988419285194 1 0.158226490020752 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479909 chr17:7479928 synonymous SNV . 0 40 hm5C_associated_SNPs_30468 0 0 1 0 2 EIF4A1 chr17:7480010 5'GT 7480010 Upstream 83bp
chr17 7479928 7479928 1 + G A OV 7479910 + 7479890 7479930 41 CACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGCA CACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTACA < 41bp 1 0.411052555360853 1 0.206307917833328 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479910 chr17:7479928 synonymous SNV . 0 39 hm5C_associated_SNPs_30469 0 0 1 0 2 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 87bp
chr17 7479928 7479928 1 + G A OV 7479910 + 7479890 7479930 41 CACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGCA CACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTACA < 41bp 1 0.411052555360853 1 0.206307917833328 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479910 chr17:7479928 synonymous SNV . 0 39 hm5C_associated_SNPs_30469 0 0 1 0 2 EIF4A1 chr17:7480010 5'GT 7480010 Upstream 83bp
chr8 22037887 22037887 1 + G T OV 22037894 + 22037874 22037914 41 CTCACAGCCTGTGGAGAGACCCTGCAAGACAGCACAGGCAA CTCACAGCCTGTGTAGAGACCCTGCAAGACAGCACAGGCAA < 41bp 1 0.0883009039517002 1 0.0991290807723999 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037894 chr8:22037887 nonsynonymous SNV 0.982 3 14 hm5C_associated_SNPs_30470 0 0 1 1 1 BMP1 chr8:22037881 3'AG 22037881 Downstream 7bp
chr9 6498130 6498130 1 + G A OV 6498113 + 6498093 6498133 41 GTTGAACCTGCTCCTTGGACCTCTGAAGGAATAGAACGGTC GTTGAACCTGCTCCTTGGACCTCTGAAGGAATAGAACAGTC < 41bp 1 0.391342105791895 1 0.130419254302979 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UHRF2 ENSG00000147854 CDS Human protein_coding chr9:6498113 chr9:6498130 nonsynonymous SNV 0.991 4 38 hm5C_associated_SNPs_30471 0 0 1 0 1 UHRF2 chr9:6498158 5'GT 6498158 Upstream 29bp
chr9 6498130 6498130 1 + G A OV 6498115 + 6498095 6498135 41 TGAACCTGCTCCTTGGACCTCTGAAGGAATAGAACGGTCAA TGAACCTGCTCCTTGGACCTCTGAAGGAATAGAACAGTCAA < 41bp 1 0.708756044061127 1 0.752581000328064 experiment 0.582487911877746 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UHRF2 ENSG00000147854 CDS Human protein_coding chr9:6498115 chr9:6498130 nonsynonymous SNV 0.991 4 36 hm5C_associated_SNPs_30472 0 0 1 0 1 UHRF2 chr9:6498158 5'GT 6498158 Upstream 29bp
chr16 28845928 28845928 1 + C G OV 28845926 + 28845906 28845946 41 CCCGCCTCTGGTGGCTGCCACGCCCTATTCTTCCTACATCC CCCGCCTCTGGTGGCTGCCACGGCCTATTCTTCCTACATCC < 41bp 1 0.509086596052314 1 0.87845778465271 experiment 0.981826807895372 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28845926 chr16:28845928 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_30474 0 0 1 0 1 ATXN2L chr16:28846014 5'GT 28846014 Upstream 87bp
chr16 67575618 67575618 1 + C G OV 67575598 + 67575578 67575618 41 CCCTCAGCTGCTTCTTCTGTCAACAAGGCCTCCACAGTCAC CCCTCAGCTGCTTCTTCTGTCAACAAGGCCTCCACAGTCAG < 41bp 1 0.652934200193923 1 0.69017106294632 experiment 0.694131599612154 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67575598 chr16:67575618 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_30475 0 0 0 0 2 RIPOR1 chr16:67575556 3'AG 67575556 Downstream 63bp
chr16 67575618 67575618 1 + C G OV 67575598 + 67575578 67575618 41 CCCTCAGCTGCTTCTTCTGTCAACAAGGCCTCCACAGTCAC CCCTCAGCTGCTTCTTCTGTCAACAAGGCCTCCACAGTCAG < 41bp 1 0.652934200193923 1 0.69017106294632 experiment 0.694131599612154 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67575598 chr16:67575618 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_30475 0 0 0 0 2 RIPOR1 chr16:67575685 5'GT 67575685 Upstream 68bp
chr15 72057451 72057451 1 + A T OV 72057443 + 72057423 72057463 41 ACACCTTTGAAGTGTTGGACCCCTCTGAATGTTCTTTCCTG ACACCTTTGAAGTGTTGGACCCCTCTGATTGTTCTTTCCTG < 41bp 1 0.0263759554223586 1 0.0207565724849701 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control THSD4 ENSG00000187720 CDS Human protein_coding chr15:72057443 chr15:72057451 nonsynonymous SNV 0.784 1 29 hm5C_associated_SNPs_30478 0 0 0 0 1 THSD4 chr15:72057538 5'GT 72057538 Upstream 88bp
chr20 32354838 32354838 1 + G C OV 32354845 + 32354825 32354865 41 TGACCCAGCATAAGAATGAGCAGGTAGGTGGATGGTGGCAG TGACCCAGCATAACAATGAGCAGGTAGGTGGATGGTGGCAG < 41bp 1 0.516227097219822 1 0.484139293432236 experiment 0.967545805560356 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32354845 chr20:32354838 nonsynonymous SNV 0.849 3 14 hm5C_associated_SNPs_30480 0 0 0 0 1 ZNF341 chr20:32354847 5'GT 32354847 Upstream 10bp
chr15 69747810 69747810 1 + G C OV 69747803 + 69747783 69747823 41 GGAAGCAAAGAAAGAAGAATCCGAGGAGTCTGATGATGACA GGAAGCAAAGAAAGAAGAATCCGAGGACTCTGATGATGACA < 41bp 1 0.338203541775551 1 0.529609978199005 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747803 chr15:69747810 nonsynonymous SNV 0.981 1 28 hm5C_associated_SNPs_30500 0 0 1 0 1 RPLP1 chr15:69747767 3'AG 69747767 Downstream 44bp
chr15 69747810 69747810 1 + G C OV 69747822 + 69747802 69747842 41 TCCGAGGAGTCTGATGATGACATGGGCTTTGGTCTTTTTGA TCCGAGGACTCTGATGATGACATGGGCTTTGGTCTTTTTGA < 41bp 1 0.386604609537226 1 0.502996385097504 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747822 chr15:69747810 nonsynonymous SNV 0.981 1 9 hm5C_associated_SNPs_30501 0 0 1 0 1 RPLP1 chr15:69747767 3'AG 69747767 Downstream 44bp
chr9 131847014 131847014 1 + G C OV 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTCACCCT < 41bp 1 0.536841728259266 1 0.206163048744202 experiment 0.926316543481469 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131847014 synonymous SNV . 0 36 hm5C_associated_SNPs_30502 0 0 1 0 2 DOLPP1 chr9:131846947 3'AG 131846947 Downstream 68bp
chr9 131847014 131847014 1 + G C OV 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTCACCCT < 41bp 1 0.536841728259266 1 0.206163048744202 experiment 0.926316543481469 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131847014 synonymous SNV . 0 36 hm5C_associated_SNPs_30502 0 0 1 0 2 DOLPP1 chr9:131847047 5'GT 131847047 Upstream 34bp
chr9 132482984 132482984 1 + A C OV 132482973 + 132482953 132482993 41 AAGTCCTACAGCCAGGAGGCCGCCATCGAGCAGCCCGTGGC AAGTCCTACAGCCAGGAGGCCGCCATCGAGCCGCCCGTGGC < 41bp 1 0.650797903812321 1 0.582274913787842 experiment 0.698404192375357 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRX2 ENSG00000167157 CDS Human protein_coding chr9:132482973 chr9:132482984 nonsynonymous SNV 0.998 4 32 hm5C_associated_SNPs_30505 0 0 0 0 1 PRRX2 chr9:132483053 5'GT 132483053 Upstream 70bp
chr12 109961915 109961915 1 + A T OV 109961906 + 109961886 109961926 41 ACTCCGAGTTCTATAAAAACCTCACCTCCATCAAGGTGAGC ACTCCGAGTTCTATAAAAACCTCACCTCCTTCAAGGTGAGC < 41bp 1 0.197398291738506 1 0.0463142096996307 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UBE3B ENSG00000151148 CDS Human protein_coding chr12:109961906 chr12:109961915 nonsynonymous SNV 0.936 4 30 hm5C_associated_SNPs_30506 0 0 1 0 1 UBE3B chr12:109961920 5'GT 109961920 Upstream 6bp
chr12 109961915 109961915 1 + A T OV 109961913 + 109961893 109961933 41 GTTCTATAAAAACCTCACCTCCATCAAGGTGAGCATGGAAT GTTCTATAAAAACCTCACCTCCTTCAAGGTGAGCATGGAAT < 41bp 1 0.012326241552139 1 0.103069245815277 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UBE3B ENSG00000151148 CDS Human protein_coding chr12:109961913 chr12:109961915 nonsynonymous SNV 0.936 4 23 hm5C_associated_SNPs_30507 0 0 1 0 1 UBE3B chr12:109961920 5'GT 109961920 Upstream 6bp
chrX 129185903 129185903 1 + G A OV 129185891 + 129185871 129185911 41 ATCCTCCTGGGAGCTCAGATCAAGAAGGAGACGATCCGATG ATCCTCCTGGGAGCTCAGATCAAGAAGGAGACAATCCGATG < 41bp 1 0.71943760908121 1 0.878881990909576 experiment 0.56112478183758 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129185891 chrX:129185903 nonsynonymous SNV 0.755 2 33 hm5C_associated_SNPs_30508 0 0 1 0 2 BCORL1 chrX:129185835 3'AG 129185835 Downstream 69bp
chrX 129185903 129185903 1 + G A OV 129185891 + 129185871 129185911 41 ATCCTCCTGGGAGCTCAGATCAAGAAGGAGACGATCCGATG ATCCTCCTGGGAGCTCAGATCAAGAAGGAGACAATCCGATG < 41bp 1 0.71943760908121 1 0.878881990909576 experiment 0.56112478183758 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129185891 chrX:129185903 nonsynonymous SNV 0.755 2 33 hm5C_associated_SNPs_30508 0 0 1 0 2 BCORL1 chrX:129185991 5'GT 129185991 Upstream 89bp
chr8 48883166 48883166 1 + C T OV 48883170 + 48883150 48883190 41 ACATCTTGCTGTGTGGCGACCCTGGTACCAGCAAGTCCCAG ACATCTTGCTGTGTGGTGACCCTGGTACCAGCAAGTCCCAG < 41bp 1 0.339892018915055 1 0.230674833059311 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48883170 chr8:48883166 synonymous SNV . 0 17 hm5C_associated_SNPs_30515 0 0 1 0 1 MCM4 chr8:48883071 3'AG 48883071 Downstream 96bp
chr16 8735028 8735028 1 + C T OV 8735032 + 8735012 8735052 41 TGGACTGGCTGAAGGACGACCTCTGCACAGGTGTGTGTTTC TGGACTGGCTGAAGGATGACCTCTGCACAGGTGTGTGTTTC < 41bp 1 0.254262150330143 1 0.510338008403778 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control METTL22 ENSG00000067365 CDS Human protein_coding chr16:8735032 chr16:8735028 synonymous SNV . 0 17 hm5C_associated_SNPs_30517 0 0 1 0 2 METTL22 chr16:8734988 3'AG 8734988 Downstream 41bp
chr16 8735028 8735028 1 + C T OV 8735032 + 8735012 8735052 41 TGGACTGGCTGAAGGACGACCTCTGCACAGGTGTGTGTTTC TGGACTGGCTGAAGGATGACCTCTGCACAGGTGTGTGTTTC < 41bp 1 0.254262150330143 1 0.510338008403778 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control METTL22 ENSG00000067365 CDS Human protein_coding chr16:8735032 chr16:8735028 synonymous SNV . 0 17 hm5C_associated_SNPs_30517 0 0 1 0 2 METTL22 chr16:8735041 5'GT 8735041 Upstream 14bp
chr7 101960936 101960936 1 + C T OV 101960919 + 101960899 101960939 41 CCCACTGGAGTCAGGGGGCTCGGCCGACATCACCCTTCGCA CCCACTGGAGTCAGGGGGCTCGGCCGACATCACCCTTTGCA < 41bp 1 0.451138306022947 1 0.619796872138977 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SH2B2 ENSG00000160999 CDS Human protein_coding chr7:101960919 chr7:101960936 nonsynonymous SNV 0.428 4 38 hm5C_associated_SNPs_30518 0 0 0 0 1 SH2B2 chr7:101960969 5'GT 101960969 Upstream 34bp
chr5 65118659 65118659 1 + C T OV 65118652 + 65118632 65118672 41 AATCCTGAAACCTGGGGGATCTCTGGACGGCATGGACATGC AATCCTGAAACCTGGGGGATCTCTGGATGGCATGGACATGC < 41bp 1 0.377656861313105 1 0.227969527244568 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NLN ENSG00000123213 CDS Human protein_coding chr5:65118652 chr5:65118659 synonymous SNV . 0 28 hm5C_associated_SNPs_30519 0 0 1 0 1 NLN chr5:65118609 3'AG 65118609 Downstream 51bp
chr20 39977793 39977793 1 + G A OV 39977802 + 39977782 39977822 41 ACTCGGATGGCGAGTGGCCCCCCCAGGCCAGGTAAGAGTCC ACTCGGATGGCAAGTGGCCCCCCCAGGCCAGGTAAGAGTCC < 41bp 1 0.515970835326217 1 0.358942210674286 experiment 0.968058329347566 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39977802 chr20:39977793 nonsynonymous SNV 0.946 4 12 hm5C_associated_SNPs_30520 0 0 1 0 3 LPIN3 chr20:39977729 3'AG 39977729 Downstream 65bp
chr20 39977793 39977793 1 + G A OV 39977802 + 39977782 39977822 41 ACTCGGATGGCGAGTGGCCCCCCCAGGCCAGGTAAGAGTCC ACTCGGATGGCAAGTGGCCCCCCCAGGCCAGGTAAGAGTCC < 41bp 1 0.515970835326217 1 0.358942210674286 experiment 0.968058329347566 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39977802 chr20:39977793 nonsynonymous SNV 0.946 4 12 hm5C_associated_SNPs_30520 0 0 1 0 3 LPIN3 chr20:39977732 3'AG 39977732 Downstream 62bp
chr20 39977793 39977793 1 + G A OV 39977802 + 39977782 39977822 41 ACTCGGATGGCGAGTGGCCCCCCCAGGCCAGGTAAGAGTCC ACTCGGATGGCAAGTGGCCCCCCCAGGCCAGGTAAGAGTCC < 41bp 1 0.515970835326217 1 0.358942210674286 experiment 0.968058329347566 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39977802 chr20:39977793 nonsynonymous SNV 0.946 4 12 hm5C_associated_SNPs_30520 0 0 1 0 3 LPIN3 chr20:39977812 5'GT 39977812 Upstream 20bp
chrX 106046121 106046121 1 + C T OV 106046129 + 106046109 106046149 41 TTCTGAAAAATGCGCTGAAGCTGTGGCTGATGGAAAGGTCC TTCTGAAAAATGTGCTGAAGCTGTGGCTGATGGAAAGGTCC < 41bp 1 0.54849851549321 1 0.153141409158707 experiment 0.90300296901358 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TBC1D8B ENSG00000133138 CDS Human protein_coding chrX:106046129 chrX:106046121 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_30522 0 0 1 0 1 TBC1D8B chrX:106046213 5'GT 106046213 Upstream 93bp
chr2 169551529 169551529 1 + A T OV 169551536 + 169551516 169551556 41 TTATTGGTCTTTGATGTTTTCTCAGTTCACTGATATCAAAA TTATTGGTCTTTGTTGTTTTCTCAGTTCACTGATATCAAAA < 41bp 1 0.518472549290156 1 0.640818953514099 experiment 0.963054901419688 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169551536 chr2:169551529 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_30523 0 0 1 0 2 CERS6 chr2:169551469 3'AG 169551469 Downstream 61bp
chr2 169551529 169551529 1 + A T OV 169551536 + 169551516 169551556 41 TTATTGGTCTTTGATGTTTTCTCAGTTCACTGATATCAAAA TTATTGGTCTTTGTTGTTTTCTCAGTTCACTGATATCAAAA < 41bp 1 0.518472549290156 1 0.640818953514099 experiment 0.963054901419688 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169551536 chr2:169551529 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_30523 0 0 1 0 2 CERS6 chr2:169551561 5'GT 169551561 Upstream 33bp
chr9 131010999 131010999 1 + G A OV 131010994 + 131010974 131011014 41 TCAACAAGACCGTGAGGGACCTCATGCCCAAGACCATCATG TCAACAAGACCGTGAGGGACCTCATACCCAAGACCATCATG < 41bp 1 0.338254949516467 1 0.0706710815429688 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM1 ENSG00000106976 CDS Human protein_coding chr9:131010994 chr9:131010999 nonsynonymous SNV 0.999 1 26 hm5C_associated_SNPs_30524 0 0 1 2 1 DNM1 chr9:131011032 5'GT 131011032 Upstream 34bp
chr7 819707 819707 1 + G T OV 819711 + 819691 819731 41 TCCTACTATCAGAGCAGTGTCCAGTACCTGTACCGAGAGTT TCCTACTATCAGAGCATTGTCCAGTACCTGTACCGAGAGTT < 41bp 1 0.198587956991148 1 0.331994831562042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:819711 chr7:819707 nonsynonymous SNV 0.139 1 17 hm5C_associated_SNPs_30525 0 0 1 0 1 DNAAF5 chr7:819781 5'GT 819781 Upstream 75bp
chr10 60549137 60549137 1 + T A OV 60549151 + 60549131 60549171 41 TTTCAGTATCATTTAAACAGCGTTCCCGAATGTATGGTGCT TTTCAGAATCATTTAAACAGCGTTCCCGAATGTATGGTGCT < 41bp 1 0.0161586778205483 1 0.0459296107292175 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60549151 chr10:60549137 nonsynonymous SNV 0.995 4 7 hm5C_associated_SNPs_30526 0 0 1 0 1 BICC1 chr10:60549216 5'GT 60549216 Upstream 80bp
chr2 169551528 169551528 1 + G C OV 169551536 + 169551516 169551556 41 TTATTGGTCTTTGATGTTTTCTCAGTTCACTGATATCAAAA TTATTGGTCTTTCATGTTTTCTCAGTTCACTGATATCAAAA < 41bp 1 0.455327899469119 1 0.252409338951111 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169551536 chr2:169551528 nonsynonymous SNV 0.999 5 13 hm5C_associated_SNPs_30527 0 0 1 0 2 CERS6 chr2:169551469 3'AG 169551469 Downstream 60bp
chr2 169551528 169551528 1 + G C OV 169551536 + 169551516 169551556 41 TTATTGGTCTTTGATGTTTTCTCAGTTCACTGATATCAAAA TTATTGGTCTTTCATGTTTTCTCAGTTCACTGATATCAAAA < 41bp 1 0.455327899469119 1 0.252409338951111 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169551536 chr2:169551528 nonsynonymous SNV 0.999 5 13 hm5C_associated_SNPs_30527 0 0 1 0 2 CERS6 chr2:169551561 5'GT 169551561 Upstream 34bp
chr7 43990227 43990227 1 + G A OV 43990229 + 43990209 43990249 41 ATCTGCTCGCTGCTCTGCGACCCCAACCCCGATGACCCCCT ATCTGCTCGCTGCTCTGCAACCCCAACCCCGATGACCCCCT < 41bp 1 0.61078911311789 1 0.0782686173915863 experiment 0.778421773764219 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE2D4 ENSG00000078967 CDS Human protein_coding chr7:43990229 chr7:43990227 nonsynonymous SNV 0.965 2 19 hm5C_associated_SNPs_30529 0 0 1 0 2 UBE2D4 chr7:43990198 3'AG 43990198 Downstream 30bp
chr7 43990227 43990227 1 + G A OV 43990229 + 43990209 43990249 41 ATCTGCTCGCTGCTCTGCGACCCCAACCCCGATGACCCCCT ATCTGCTCGCTGCTCTGCAACCCCAACCCCGATGACCCCCT < 41bp 1 0.61078911311789 1 0.0782686173915863 experiment 0.778421773764219 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE2D4 ENSG00000078967 CDS Human protein_coding chr7:43990229 chr7:43990227 nonsynonymous SNV 0.965 2 19 hm5C_associated_SNPs_30529 0 0 1 0 2 UBE2D4 chr7:43990291 5'GT 43990291 Upstream 65bp
chr19 10789834 10789834 1 + C G OV 10789854 + 10789834 10789874 41 CTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG GTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG < 41bp 1 0.0967819338719398 1 0.0768981873989105 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789854 chr19:10789834 nonsynonymous SNV 0.936 1 1 hm5C_associated_SNPs_30530 0 0 1 0 2 ILF3 chr19:10789773 3'AG 10789773 Downstream 62bp
chr19 10789834 10789834 1 + C G OV 10789854 + 10789834 10789874 41 CTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG GTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG < 41bp 1 0.0967819338719398 1 0.0768981873989105 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789854 chr19:10789834 nonsynonymous SNV 0.936 1 1 hm5C_associated_SNPs_30530 0 0 1 0 2 ILF3 chr19:10789868 5'GT 10789868 Upstream 35bp
chr13 26956987 26956987 1 + G C OV 26956984 + 26956964 26957004 41 TTTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAA TTTTAGTTATGGGTGAAGGTCCTCAGCGAGGAAGAGTAAAA < 41bp 1 0.140938686257048 1 0.0430678129196167 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CDK8 ENSG00000132964 CDS Human protein_coding chr13:26956984 chr13:26956987 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_30531 0 0 1 0 2 CDK8 chr13:26956951 3'AG 26956951 Downstream 37bp
chr13 26956987 26956987 1 + G C OV 26956984 + 26956964 26957004 41 TTTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAA TTTTAGTTATGGGTGAAGGTCCTCAGCGAGGAAGAGTAAAA < 41bp 1 0.140938686257048 1 0.0430678129196167 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CDK8 ENSG00000132964 CDS Human protein_coding chr13:26956984 chr13:26956987 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_30531 0 0 1 0 2 CDK8 chr13:26957008 5'GT 26957008 Upstream 22bp
chr1 162469786 162469786 1 + G A OV 162469797 + 162469777 162469817 41 TCTCCAAATGTGCCATCACGCTGTCTGTTGCTTGAACTCCT TCTCCAAATATGCCATCACGCTGTCTGTTGCTTGAACTCCT < 41bp 1 0.273164448004523 1 0.298794567584991 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162469797 chr1:162469786 nonsynonymous SNV 0.997 0 10 hm5C_associated_SNPs_30532 0 0 1 0 1 UHMK1 chr1:162469745 3'AG 162469745 Downstream 42bp
chr6 43143543 43143543 1 + G C OV 43143562 + 43143542 43143582 41 CGGCCCCTCCTTTCCCATCACCAACTACCTGGCACCAGTGT CCGCCCCTCCTTTCCCATCACCAACTACCTGGCACCAGTGT < 41bp 1 0.0432828714241911 1 0.10919725894928 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SRF ENSG00000112658 CDS Human protein_coding chr6:43143562 chr6:43143543 nonsynonymous SNV 0.992 4 2 hm5C_associated_SNPs_30533 0 0 1 0 1 SRF chr6:43143444 3'AG 43143444 Downstream 100bp
chr6 43143543 43143543 1 + G C OV 43143563 + 43143543 43143583 41 GGCCCCTCCTTTCCCATCACCAACTACCTGGCACCAGTGTC CGCCCCTCCTTTCCCATCACCAACTACCTGGCACCAGTGTC < 41bp 1 0.123937736060202 1 0.046401172876358 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRF ENSG00000112658 CDS Human protein_coding chr6:43143563 chr6:43143543 nonsynonymous SNV 0.992 4 1 hm5C_associated_SNPs_30534 0 0 1 0 1 SRF chr6:43143444 3'AG 43143444 Downstream 100bp
chr2 48033355 48033355 1 + C G OV 48033370 + 48033350 48033390 41 TACTGCAACATTTGATGGGACGGCAATAGCAAATGCAGTTG TACTGGAACATTTGATGGGACGGCAATAGCAAATGCAGTTG < 41bp 1 0.700652324803344 1 0.14603978395462 experiment 0.598695350393313 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MSH6 ENSG00000116062 CDS Human protein_coding chr2:48033370 chr2:48033355 nonsynonymous SNV 0.993 5 6 hm5C_associated_SNPs_30537 0 0 1 0 1 MSH6 chr2:48033343 3'AG 48033343 Downstream 13bp
chrX 110954936 110954936 1 + C T OV 110954916 + 110954896 110954936 41 TTTGAAGTATGTGGAGGGATCTTTTGAGAAATACCTGGAAC TTTGAAGTATGTGGAGGGATCTTTTGAGAAATACCTGGAAT < 41bp 1 0.14598716180263 1 0.0641109347343445 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG13 ENSG00000101901 CDS Human protein_coding chrX:110954916 chrX:110954936 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_30538 0 0 1 0 1 ALG13 chrX:110954903 3'AG 110954903 Downstream 34bp
chr8 22064471 22064471 1 + A T OV 22064464 + 22064444 22064484 41 AAGGAGTGCACGTGGGCCATCTCCAGCACCCCCGGGCACCG AAGGAGTGCACGTGGGCCATCTCCAGCTCCCCCGGGCACCG < 41bp 1 0.708090141748069 1 0.792576313018799 experiment 0.583819716503862 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22064464 chr8:22064471 nonsynonymous SNV 0.998 3 28 hm5C_associated_SNPs_30539 0 0 1 0 1 BMP1 chr8:22064494 5'GT 22064494 Upstream 24bp
chr1 43911903 43911903 1 + C A OV 43911906 + 43911886 43911926 41 CGGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGCATT CGGGCACTGCCTGGGGGAATCATCCTCATGGAACTGGCATT < 41bp 1 0.0729336384147762 1 0.294087380170822 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911906 chr1:43911903 synonymous SNV . 0 18 hm5C_associated_SNPs_30540 0 0 0 0 2 SZT2 chr1:43911850 3'AG 43911850 Downstream 54bp
chr1 43911903 43911903 1 + C A OV 43911906 + 43911886 43911926 41 CGGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGCATT CGGGCACTGCCTGGGGGAATCATCCTCATGGAACTGGCATT < 41bp 1 0.0729336384147762 1 0.294087380170822 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911906 chr1:43911903 synonymous SNV . 0 18 hm5C_associated_SNPs_30540 0 0 0 0 2 SZT2 chr1:43911930 5'GT 43911930 Upstream 28bp
chr1 43911903 43911903 1 + C A OV 43911909 + 43911889 43911929 41 GCACTGCCTGGGGGCATCATCCTCATGGAACTGGCATTCCA GCACTGCCTGGGGGAATCATCCTCATGGAACTGGCATTCCA < 41bp 1 0.203630346954316 1 0.117857933044434 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911909 chr1:43911903 synonymous SNV . 0 15 hm5C_associated_SNPs_30541 0 0 0 0 2 SZT2 chr1:43911850 3'AG 43911850 Downstream 54bp
chr1 43911903 43911903 1 + C A OV 43911909 + 43911889 43911929 41 GCACTGCCTGGGGGCATCATCCTCATGGAACTGGCATTCCA GCACTGCCTGGGGGAATCATCCTCATGGAACTGGCATTCCA < 41bp 1 0.203630346954316 1 0.117857933044434 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911909 chr1:43911903 synonymous SNV . 0 15 hm5C_associated_SNPs_30541 0 0 0 0 2 SZT2 chr1:43911930 5'GT 43911930 Upstream 28bp
chr1 43911903 43911903 1 + C A OV 43911910 + 43911890 43911930 41 CACTGCCTGGGGGCATCATCCTCATGGAACTGGCATTCCAG CACTGCCTGGGGGAATCATCCTCATGGAACTGGCATTCCAG < 41bp 1 0.22490782689616 1 0.13577464222908 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911910 chr1:43911903 synonymous SNV . 0 14 hm5C_associated_SNPs_30542 0 0 0 0 2 SZT2 chr1:43911850 3'AG 43911850 Downstream 54bp
chr1 43911903 43911903 1 + C A OV 43911910 + 43911890 43911930 41 CACTGCCTGGGGGCATCATCCTCATGGAACTGGCATTCCAG CACTGCCTGGGGGAATCATCCTCATGGAACTGGCATTCCAG < 41bp 1 0.22490782689616 1 0.13577464222908 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911910 chr1:43911903 synonymous SNV . 0 14 hm5C_associated_SNPs_30542 0 0 0 0 2 SZT2 chr1:43911930 5'GT 43911930 Upstream 28bp
chr1 43911903 43911903 1 + C A OV 43911912 + 43911892 43911932 41 CTGCCTGGGGGCATCATCCTCATGGAACTGGCATTCCAGGT CTGCCTGGGGGAATCATCCTCATGGAACTGGCATTCCAGGT < 41bp 1 0.255165423840177 1 0.685147166252136 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911912 chr1:43911903 synonymous SNV . 0 12 hm5C_associated_SNPs_30543 0 0 0 0 2 SZT2 chr1:43911850 3'AG 43911850 Downstream 54bp
chr1 43911903 43911903 1 + C A OV 43911912 + 43911892 43911932 41 CTGCCTGGGGGCATCATCCTCATGGAACTGGCATTCCAGGT CTGCCTGGGGGAATCATCCTCATGGAACTGGCATTCCAGGT < 41bp 1 0.255165423840177 1 0.685147166252136 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911912 chr1:43911903 synonymous SNV . 0 12 hm5C_associated_SNPs_30543 0 0 0 0 2 SZT2 chr1:43911930 5'GT 43911930 Upstream 28bp
chr6 7226808 7226808 1 + G C OV 7226819 + 7226799 7226839 41 TTTCATACAGAACAACCCTTCAATTCCTGCTGGCTTCCACG TTTCATACACAACAACCCTTCAATTCCTGCTGGCTTCCACG < 41bp 1 0.0288400157080821 1 0.125886708498001 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RREB1 ENSG00000124782 CDS Human protein_coding chr6:7226819 chr6:7226808 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_30544 0 0 1 0 1 RREB1 chr6:7226889 5'GT 7226889 Upstream 82bp
chr1 22307642 22307642 1 + G A OV 22307622 + 22307602 22307642 41 TCCCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTGG TCCCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTGA < 41bp 1 0.111001096230068 1 0.0684033334255219 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307622 chr1:22307642 stopgain 0.092 0 41 hm5C_associated_SNPs_30545 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 24bp
chr1 22307642 22307642 1 + G A OV 22307624 + 22307604 22307644 41 CCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTGGAA CCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTGAAA < 41bp 1 0.169432104641958 1 0.0733899176120758 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307624 chr1:22307642 stopgain 0.092 0 39 hm5C_associated_SNPs_30546 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 24bp
chr1 22307642 22307642 1 + G A OV 22307631 + 22307611 22307651 41 ACTCTGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCG ACTCTGGGGACCTCTTTGTGCATCCACTCTGAAACCGCTCG < 41bp 1 0.100461425360964 1 0.30762043595314 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307631 chr1:22307642 stopgain 0.092 0 32 hm5C_associated_SNPs_30547 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 24bp
chr1 22307642 22307642 1 + G A OV 22307634 + 22307614 22307654 41 CTGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGT CTGGGGACCTCTTTGTGCATCCACTCTGAAACCGCTCGTGT < 41bp 1 0.116173281586996 1 0.0448500216007233 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307634 chr1:22307642 stopgain 0.092 0 29 hm5C_associated_SNPs_30548 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 24bp
chr1 22307642 22307642 1 + G A OV 22307635 + 22307615 22307655 41 TGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTG TGGGGACCTCTTTGTGCATCCACTCTGAAACCGCTCGTGTG < 41bp 1 0.126430951818314 1 0.0653737187385559 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307635 chr1:22307642 stopgain 0.092 0 28 hm5C_associated_SNPs_30549 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 24bp
chr1 22307642 22307642 1 + G A OV 22307637 + 22307617 22307657 41 GGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG GGGACCTCTTTGTGCATCCACTCTGAAACCGCTCGTGTGTG < 41bp 1 0.227646663010391 1 0.0479481220245361 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307637 chr1:22307642 stopgain 0.092 0 26 hm5C_associated_SNPs_30550 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 24bp
chr1 22307642 22307642 1 + G A OV 22307639 + 22307619 22307659 41 GACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTGTGGC GACCTCTTTGTGCATCCACTCTGAAACCGCTCGTGTGTGGC < 41bp 1 0.408932583182475 1 0.593547403812408 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307639 chr1:22307642 stopgain 0.092 0 24 hm5C_associated_SNPs_30551 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 24bp
chr1 22307642 22307642 1 + G A OV 22307645 + 22307625 22307665 41 TTTGTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGG TTTGTGCATCCACTCTGAAACCGCTCGTGTGTGGCCTGTGG < 41bp 1 0.15494913627898 1 0.0384257137775421 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307645 chr1:22307642 stopgain 0.092 0 18 hm5C_associated_SNPs_30552 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 24bp
chr1 22307642 22307642 1 + G A OV 22307646 + 22307626 22307666 41 TTGTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGGG TTGTGCATCCACTCTGAAACCGCTCGTGTGTGGCCTGTGGG < 41bp 1 0.221731024391932 1 0.230593621730804 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307646 chr1:22307642 stopgain 0.092 0 17 hm5C_associated_SNPs_30553 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 24bp
chr1 22307642 22307642 1 + G A OV 22307648 + 22307628 22307668 41 GTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGGGTG GTGCATCCACTCTGAAACCGCTCGTGTGTGGCCTGTGGGTG < 41bp 1 0.470271919527947 1 0.164645075798035 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307648 chr1:22307642 stopgain 0.092 0 15 hm5C_associated_SNPs_30554 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 24bp
chr16 22328494 22328494 1 + C G OV 22328499 + 22328479 22328519 41 CTGCGCACGCTGCCCCTGGCCGATCAGATCAAGATCCTGAT CTGCGCACGCTGCCCGTGGCCGATCAGATCAAGATCCTGAT < 41bp 1 0.20636079904909 1 0.183167785406113 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22328499 chr16:22328494 nonsynonymous SNV 0.942 4 16 hm5C_associated_SNPs_30563 0 0 1 0 2 POLR3E chr16:22328436 3'AG 22328436 Downstream 59bp
chr16 22328494 22328494 1 + C G OV 22328499 + 22328479 22328519 41 CTGCGCACGCTGCCCCTGGCCGATCAGATCAAGATCCTGAT CTGCGCACGCTGCCCGTGGCCGATCAGATCAAGATCCTGAT < 41bp 1 0.20636079904909 1 0.183167785406113 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22328499 chr16:22328494 nonsynonymous SNV 0.942 4 16 hm5C_associated_SNPs_30563 0 0 1 0 2 POLR3E chr16:22328527 5'GT 22328527 Upstream 34bp
chr1 171560762 171560762 1 + C T OV 171560780 + 171560760 171560800 41 AACGGTTCTTCTCTGAACAGCAACAGAGCAAACAGATAGGA AATGGTTCTTCTCTGAACAGCAACAGAGCAAACAGATAGGA < 41bp 1 0.350925090618584 1 0.389968723058701 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171560780 chr1:171560762 nonsynonymous SNV 0.999 3 3 hm5C_associated_SNPs_30567 0 0 1 0 1 PRRC2C chr1:171560726 3'AG 171560726 Downstream 37bp
chr11 9462020 9462020 1 + A G OV 9462007 + 9461987 9462027 41 ATTATGACTTGGCAGAGGAACTGGGGAGTGATGAAGATGAT ATTATGACTTGGCAGAGGAACTGGGGAGTGATGGAGATGAT < 41bp 1 0.651410162367347 1 0.476011544466019 experiment 0.697179675265307 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9462007 chr11:9462020 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_30568 0 0 1 0 1 IPO7 chr11:9462002 3'AG 9462002 Downstream 19bp
chr1 223934699 223934699 1 + G T OV 223934719 + 223934699 223934739 41 GATCAACGGATGCTATGAAGCGCTATCAGGGGGTGCCACCA TATCAACGGATGCTATGAAGCGCTATCAGGGGGTGCCACCA < 41bp 1 0.742907222224191 1 0.762751340866089 experiment 0.514185555551618 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223934719 chr1:223934699 nonsynonymous SNV 0.776 5 1 hm5C_associated_SNPs_30569 0 0 1 0 1 CAPN2 chr1:223934699 3'AG 223934699 Downstream 1bp
chr2 32958940 32958940 1 + C T OV 32958943 + 32958923 32958963 41 CTACATCTGTATTGGAACGCCTGAAGATTTTCTATTGCTGT CTACATCTGTATTGGAATGCCTGAAGATTTTCTATTGCTGT < 41bp 1 0.658835113471206 1 0.618620872497559 experiment 0.682329773057588 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32958943 chr2:32958940 nonsynonymous SNV 0.995 4 18 hm5C_associated_SNPs_30572 0 0 1 0 2 TTC27 chr2:32958895 3'AG 32958895 Downstream 46bp
chr2 32958940 32958940 1 + C T OV 32958943 + 32958923 32958963 41 CTACATCTGTATTGGAACGCCTGAAGATTTTCTATTGCTGT CTACATCTGTATTGGAATGCCTGAAGATTTTCTATTGCTGT < 41bp 1 0.658835113471206 1 0.618620872497559 experiment 0.682329773057588 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32958943 chr2:32958940 nonsynonymous SNV 0.995 4 18 hm5C_associated_SNPs_30572 0 0 1 0 2 TTC27 chr2:32958990 5'GT 32958990 Upstream 51bp
chr17 48824043 48824043 1 + A G OV 48824053 + 48824033 48824073 41 AGAGAACAAGATAGAAAATCCAAGGAGAAAGGTTAGTTTAT AGAGAACAAGGTAGAAAATCCAAGGAGAAAGGTTAGTTTAT < 41bp 1 0.665317361863001 1 0.581821322441101 experiment 0.669365276273997 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LUC7L3 ENSG00000108848 CDS Human protein_coding chr17:48824053 chr17:48824043 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_30573 0 0 1 0 1 LUC7L3 chr17:48824063 5'GT 48824063 Upstream 21bp
chr1 222898821 222898821 1 + T C OV 222898817 + 222898797 222898837 41 TCATCTCCCAAAACTCATTACACCTGCGGAAAAAGGAAGAG TCATCTCCCAAAACTCATTACACCCGCGGAAAAAGGAAGAG < 41bp 1 0.275538350641851 1 0.108609080314636 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BROX ENSG00000162819 CDS Human protein_coding chr1:222898817 chr1:222898821 synonymous SNV . 0 25 hm5C_associated_SNPs_30574 0 0 1 0 2 BROX chr1:222898792 3'AG 222898792 Downstream 30bp
chr1 222898821 222898821 1 + T C OV 222898817 + 222898797 222898837 41 TCATCTCCCAAAACTCATTACACCTGCGGAAAAAGGAAGAG TCATCTCCCAAAACTCATTACACCCGCGGAAAAAGGAAGAG < 41bp 1 0.275538350641851 1 0.108609080314636 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BROX ENSG00000162819 CDS Human protein_coding chr1:222898817 chr1:222898821 synonymous SNV . 0 25 hm5C_associated_SNPs_30574 0 0 1 0 2 BROX chr1:222898897 5'GT 222898897 Upstream 77bp
chr15 81221505 81221505 1 + C A OV 81221501 + 81221481 81221521 41 TTGGACCATAGCGGAAGGACCCTCCCTATAGGCCAGTAGGT TTGGACCATAGCGGAAGGACCCTCACTATAGGCCAGTAGGT < 41bp 1 0.0785937307172523 1 0.0326739549636841 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81221501 chr15:81221505 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_30575 0 0 1 0 1 CEMIP chr15:81221515 5'GT 81221515 Upstream 11bp
chr1 145115803 145115803 1 + A T OV 145115809 + 145115789 145115829 41 ATGCGAAGTACTTGAACATGCATTCCACTTATGCCAAACTT ATGCGAAGTACTTGTACATGCATTCCACTTATGCCAAACTT < 41bp 1 0.0463206273930703 1 0.0865328907966614 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC22B ENSG00000223380 ncRNA_exonic Human other chr1:145115809 chr1:145115803 . . 0 15 hm5C_associated_SNPs_30576 0 0 1 0 1 SEC22B chr1:145115735 3'AG 145115735 Downstream 69bp
chr8 124811882 124811882 1 + A T OV 124811871 + 124811851 124811891 41 TGTCCAAAGGTACAAGACTTCGAAAACTGCCAGATATATTT TGTCCAAAGGTACAAGACTTCGAAAACTGCCTGATATATTT < 41bp 1 0.743050429836299 1 0.724889874458313 experiment 0.513899140327402 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124811871 chr8:124811882 synonymous SNV . 0 32 hm5C_associated_SNPs_30577 0 0 1 0 1 FAM91A1 chr8:124811894 5'GT 124811894 Upstream 13bp
chr1 6642284 6642284 1 + G A OV 6642276 + 6642256 6642296 41 GCAGCTGAGCCTGCTGAGAACAGAAAAGGTACAGCGGTGCC GCAGCTGAGCCTGCTGAGAACAGAAAAGATACAGCGGTGCC < 41bp 1 0.764066495169819 1 0.585613787174225 experiment 0.471867009660361 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6642276 chr1:6642284 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_30578 0 0 0 0 1 ZBTB48 chr1:6642359 5'GT 6642359 Upstream 76bp
chr7 129394886 129394886 1 + C G OV 129394901 + 129394881 129394921 41 ATGTACCAGACTGTGGTGACCAGCCTCGCCCAGGGCAACGG ATGTAGCAGACTGTGGTGACCAGCCTCGCCCAGGGCAACGG < 41bp 1 0.647074459043375 1 0.332285910844803 experiment 0.705851081913251 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NRF1 ENSG00000106459 CDS Human protein_coding chr7:129394901 chr7:129394886 stopgain 1.000 1 6 hm5C_associated_SNPs_30579 0 0 1 0 1 NRF1 chr7:129394858 3'AG 129394858 Downstream 29bp
chr15 39876542 39876542 1 + T A OV 39876541 + 39876521 39876561 41 GGCCAATGAGCTGAGGCGGCCTCCCCTATGCTATCACAACG GGCCAATGAGCTGAGGCGGCCACCCCTATGCTATCACAACG < 41bp 1 0.167622980043021 1 0.409961700439453 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control THBS1 ENSG00000137801 CDS Human protein_coding chr15:39876541 chr15:39876542 synonymous SNV . 0 22 hm5C_associated_SNPs_30580 0 0 1 0 2 THBS1 chr15:39876501 3'AG 39876501 Downstream 42bp
chr15 39876542 39876542 1 + T A OV 39876541 + 39876521 39876561 41 GGCCAATGAGCTGAGGCGGCCTCCCCTATGCTATCACAACG GGCCAATGAGCTGAGGCGGCCACCCCTATGCTATCACAACG < 41bp 1 0.167622980043021 1 0.409961700439453 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control THBS1 ENSG00000137801 CDS Human protein_coding chr15:39876541 chr15:39876542 synonymous SNV . 0 22 hm5C_associated_SNPs_30580 0 0 1 0 2 THBS1 chr15:39876623 5'GT 39876623 Upstream 82bp
chr8 145139714 145139714 1 + G T OV 145139712 + 145139692 145139732 41 TACTTGCTCCCCGGCCTCTCCCGCTTCGTCTCCATCGGCCT TACTTGCTCCCCGGCCTCTCCCTCTTCGTCTCCATCGGCCT < 41bp 1 0.0801471332167941 1 0.0583536326885223 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139712 chr8:145139714 nonsynonymous SNV 0.990 2 23 hm5C_associated_SNPs_30581 0 0 0 0 1 GPAA1 chr8:145139625 3'AG 145139625 Downstream 90bp
chr19 10793341 10793341 1 + C T OV 10793360 + 10793340 10793380 41 CCACCCCTAGTGCGGCCTTTCCCTCAGATGCCACTGCCGAG CTACCCCTAGTGCGGCCTTTCCCTCAGATGCCACTGCCGAG < 41bp 1 0.126900405544781 1 0.0950523316860199 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10793360 chr19:10793341 synonymous SNV . 0 2 hm5C_associated_SNPs_30582 0 0 1 0 1 ILF3 chr19:10793380 5'GT 10793380 Upstream 40bp
chr19 10793341 10793341 1 + C T OV 10793361 + 10793341 10793381 41 CACCCCTAGTGCGGCCTTTCCCTCAGATGCCACTGCCGAGG TACCCCTAGTGCGGCCTTTCCCTCAGATGCCACTGCCGAGG < 41bp 1 0.520948994343315 1 0.245732367038727 experiment 0.95810201131337 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10793361 chr19:10793341 synonymous SNV . 0 1 hm5C_associated_SNPs_30583 0 0 1 0 1 ILF3 chr19:10793380 5'GT 10793380 Upstream 40bp
chr20 57480494 57480494 1 + C G OV 57480488 + 57480468 57480508 41 GAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA GAGGATGAAGGAGTGCGTGCCTGCTAGGAACGCTCCAACGA < 41bp 1 0.53664211154459 1 0.363990366458893 experiment 0.926715776910819 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480488 chr20:57480494 stopgain 0.763 0 27 hm5C_associated_SNPs_30584 0 0 1 0 2 GNAS chr20:57480438 3'AG 57480438 Downstream 57bp
chr20 57480494 57480494 1 + C G OV 57480488 + 57480468 57480508 41 GAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA GAGGATGAAGGAGTGCGTGCCTGCTAGGAACGCTCCAACGA < 41bp 1 0.53664211154459 1 0.363990366458893 experiment 0.926715776910819 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480488 chr20:57480494 stopgain 0.763 0 27 hm5C_associated_SNPs_30584 0 0 1 0 2 GNAS chr20:57480535 5'GT 57480535 Upstream 42bp
chr20 57480494 57480494 1 + C G OV 57480512 + 57480492 57480532 41 TACGAACGCTCCAACGAGTACCAGCTGATTGACTGTGCCCA TAGGAACGCTCCAACGAGTACCAGCTGATTGACTGTGCCCA < 41bp 1 0.138616359259436 1 0.0944194793701172 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480512 chr20:57480494 stopgain 0.763 0 3 hm5C_associated_SNPs_30585 0 0 1 0 2 GNAS chr20:57480438 3'AG 57480438 Downstream 57bp
chr20 57480494 57480494 1 + C G OV 57480512 + 57480492 57480532 41 TACGAACGCTCCAACGAGTACCAGCTGATTGACTGTGCCCA TAGGAACGCTCCAACGAGTACCAGCTGATTGACTGTGCCCA < 41bp 1 0.138616359259436 1 0.0944194793701172 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480512 chr20:57480494 stopgain 0.763 0 3 hm5C_associated_SNPs_30585 0 0 1 0 2 GNAS chr20:57480535 5'GT 57480535 Upstream 42bp
chr16 57787122 57787122 1 + G A OV 57787133 + 57787113 57787153 41 CCAACCCCAGCGCCCCCCTCCGGCGCATCTATGAGCGGCCC CCAACCCCAACGCCCCCCTCCGGCGCATCTATGAGCGGCCC < 41bp 1 0.577050205490409 1 0.740220546722412 experiment 0.845899589019183 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57787133 chr16:57787122 nonsynonymous SNV 0.001 0 10 hm5C_associated_SNPs_30586 0 0 0 0 1 KATNB1 chr16:57787179 5'GT 57787179 Upstream 58bp
chr17 27027974 27027974 1 + G C OV 27027991 + 27027971 27028011 41 CCAGCCCAGCAGCCAGTGGCCACACCACTAATGACCCCTAG CCACCCCAGCAGCCAGTGGCCACACCACTAATGACCCCTAG < 41bp 1 0.231583138388276 1 0.4397853910923 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27027991 chr17:27027974 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_30587 0 0 1 0 1 SUPT6H chr17:27027959 3'AG 27027959 Downstream 16bp
chr1 55524228 55524228 1 + G A OV 55524235 + 55524215 55524255 41 GCCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAG GCCTACACGGATGACCACAGCCGTCGCCCGCTGCGCCCCAG < 41bp 1 0.114348314328915 1 0.125695437192917 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524235 chr1:55524228 stopgain 0.004 1 14 hm5C_associated_SNPs_30588 0 0 1 0 2 PCSK9 chr1:55524172 3'AG 55524172 Downstream 57bp
chr1 55524228 55524228 1 + G A OV 55524235 + 55524215 55524255 41 GCCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAG GCCTACACGGATGACCACAGCCGTCGCCCGCTGCGCCCCAG < 41bp 1 0.114348314328915 1 0.125695437192917 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524235 chr1:55524228 stopgain 0.004 1 14 hm5C_associated_SNPs_30588 0 0 1 0 2 PCSK9 chr1:55524320 5'GT 55524320 Upstream 93bp
chr1 55524228 55524228 1 + G A OV 55524236 + 55524216 55524256 41 CCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAGA CCTACACGGATGACCACAGCCGTCGCCCGCTGCGCCCCAGA < 41bp 1 0.444949082794574 1 0.34857365489006 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524236 chr1:55524228 stopgain 0.004 1 13 hm5C_associated_SNPs_30589 0 0 1 0 2 PCSK9 chr1:55524172 3'AG 55524172 Downstream 57bp
chr1 55524228 55524228 1 + G A OV 55524236 + 55524216 55524256 41 CCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAGA CCTACACGGATGACCACAGCCGTCGCCCGCTGCGCCCCAGA < 41bp 1 0.444949082794574 1 0.34857365489006 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524236 chr1:55524228 stopgain 0.004 1 13 hm5C_associated_SNPs_30589 0 0 1 0 2 PCSK9 chr1:55524320 5'GT 55524320 Upstream 93bp
chr12 70704723 70704723 1 + G T OV 70704725 + 70704705 70704745 41 AAGAAGTTTGTAGAGGGGGTCGACAGTGACTACCATGACGA AAGAAGTTTGTAGAGGGGTTCGACAGTGACTACCATGACGA < 41bp 1 0.754520527548548 1 0.482736110687256 experiment 0.490958944902905 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT2 ENSG00000111596 CDS Human protein_coding chr12:70704725 chr12:70704723 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_30590 0 0 1 0 2 CNOT2 chr12:70704675 3'AG 70704675 Downstream 49bp
chr12 70704723 70704723 1 + G T OV 70704725 + 70704705 70704745 41 AAGAAGTTTGTAGAGGGGGTCGACAGTGACTACCATGACGA AAGAAGTTTGTAGAGGGGTTCGACAGTGACTACCATGACGA < 41bp 1 0.754520527548548 1 0.482736110687256 experiment 0.490958944902905 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT2 ENSG00000111596 CDS Human protein_coding chr12:70704725 chr12:70704723 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_30590 0 0 1 0 2 CNOT2 chr12:70704797 5'GT 70704797 Upstream 75bp
chr22 41735907 41735907 1 + C T OV 41735900 + 41735880 41735920 41 CCCGTGTTCCCCGGCGGGACCCCACTGCTACCACCTGTGGT CCCGTGTTCCCCGGCGGGACCCCACTGTTACCACCTGTGGT < 41bp 1 0.0673003976602233 1 0.0856137573719025 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41735900 chr22:41735907 synonymous SNV . 0 28 hm5C_associated_SNPs_30591 0 0 1 0 1 ZC3H7B chr22:41735820 3'AG 41735820 Downstream 88bp
chr17 16285382 16285382 1 + G A OV 16285385 + 16285365 16285405 41 GCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAACATCC GCAGCTGGAAGATGGCCATACTCTTTCTGACTACAACATCC < 41bp 1 0.349521343025431 1 0.218434929847717 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBB ENSG00000170315 CDS Human protein_coding chr17:16285385 chr17:16285382 nonsynonymous SNV 0.985 0 18 hm5C_associated_SNPs_30592 0 0 1 0 1 UBB chr17:16285444 5'GT 16285444 Upstream 63bp
chr15 91432751 91432751 1 + G C OV 91432750 + 91432730 91432770 41 GGCGCTGTCCCCCACAGGTCCGCACCTGACGTCCCACCCTG GGCGCTGTCCCCCACAGGTCCCCACCTGACGTCCCACCCTG < 41bp 1 0.139074854038611 1 0.0494334399700165 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FES ENSG00000182511 CDS Human protein_coding chr15:91432750 chr15:91432751 nonsynonymous SNV 0.320 0 22 hm5C_associated_SNPs_30593 0 0 1 0 1 FES chr15:91432747 3'AG 91432747 Downstream 5bp
chr7 149423086 149423086 1 + G A OV 149423103 + 149423083 149423123 41 CCAGCAGCACCGACTGGGACCTGGATTTTGGGAGTCCTGTG CCAACAGCACCGACTGGGACCTGGATTTTGGGAGTCCTGTG < 41bp 1 0.75945353360467 1 0.762013912200928 experiment 0.48109293279066 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149423103 chr7:149423086 nonsynonymous SNV 0.998 3 4 hm5C_associated_SNPs_30594 0 0 0 1 1 KRBA1 chr7:149423151 5'GT 149423151 Upstream 66bp
chr7 99780444 99780444 1 + C T OV 99780447 + 99780427 99780467 41 TTCAATGCTGTGAAAGCCGCCAAAAGTGACATGCAGGTAAA TTCAATGCTGTGAAAGCTGCCAAAAGTGACATGCAGGTAAA < 41bp 1 0.593876713199722 1 0.654157280921936 experiment 0.812246573600556 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG3 ENSG00000066923 CDS Human protein_coding chr7:99780447 chr7:99780444 synonymous SNV . 0 18 hm5C_associated_SNPs_30595 0 0 0 0 2 STAG3 chr7:99780346 3'AG 99780346 Downstream 99bp
chr7 99780444 99780444 1 + C T OV 99780447 + 99780427 99780467 41 TTCAATGCTGTGAAAGCCGCCAAAAGTGACATGCAGGTAAA TTCAATGCTGTGAAAGCTGCCAAAAGTGACATGCAGGTAAA < 41bp 1 0.593876713199722 1 0.654157280921936 experiment 0.812246573600556 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG3 ENSG00000066923 CDS Human protein_coding chr7:99780447 chr7:99780444 synonymous SNV . 0 18 hm5C_associated_SNPs_30595 0 0 0 0 2 STAG3 chr7:99780462 5'GT 99780462 Upstream 19bp
chr16 67915660 67915660 1 + G T OV 67915640 + 67915620 67915660 41 GAGAGCTGGCAGAGCTGCGGCACAGCCAGGAAGAGCTGCTG GAGAGCTGGCAGAGCTGCGGCACAGCCAGGAAGAGCTGCTT < 41bp 1 0.387920805570599 1 0.180884748697281 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67915640 chr16:67915660 synonymous SNV . 0 41 hm5C_associated_SNPs_30601 0 0 1 0 2 EDC4 chr16:67915571 3'AG 67915571 Downstream 90bp
chr16 67915660 67915660 1 + G T OV 67915640 + 67915620 67915660 41 GAGAGCTGGCAGAGCTGCGGCACAGCCAGGAAGAGCTGCTG GAGAGCTGGCAGAGCTGCGGCACAGCCAGGAAGAGCTGCTT < 41bp 1 0.387920805570599 1 0.180884748697281 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67915640 chr16:67915660 synonymous SNV . 0 41 hm5C_associated_SNPs_30601 0 0 1 0 2 EDC4 chr16:67915748 5'GT 67915748 Upstream 89bp
chr10 118318717 118318717 1 + G A OV 118318713 + 118318693 118318733 41 GGCTGCCCACAGATGGGTCACTATGCTGATAGATATCCTGG GGCTGCCCACAGATGGGTCACTATACTGATAGATATCCTGG < 41bp 1 0.454647860020521 1 0.163272589445114 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318713 chr10:118318717 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_30604 0 0 0 0 2 PNLIP chr10:118318666 3'AG 118318666 Downstream 52bp
chr10 118318717 118318717 1 + G A OV 118318713 + 118318693 118318733 41 GGCTGCCCACAGATGGGTCACTATGCTGATAGATATCCTGG GGCTGCCCACAGATGGGTCACTATACTGATAGATATCCTGG < 41bp 1 0.454647860020521 1 0.163272589445114 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318713 chr10:118318717 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_30604 0 0 0 0 2 PNLIP chr10:118318795 5'GT 118318795 Upstream 79bp
chr10 118318717 118318717 1 + G A OV 118318718 + 118318698 118318738 41 CCCACAGATGGGTCACTATGCTGATAGATATCCTGGGAAAA CCCACAGATGGGTCACTATACTGATAGATATCCTGGGAAAA < 41bp 1 0.566532741538504 1 0.117204070091248 experiment 0.866934516922992 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318718 chr10:118318717 nonsynonymous SNV 0.998 5 20 hm5C_associated_SNPs_30605 0 0 0 0 2 PNLIP chr10:118318666 3'AG 118318666 Downstream 52bp
chr10 118318717 118318717 1 + G A OV 118318718 + 118318698 118318738 41 CCCACAGATGGGTCACTATGCTGATAGATATCCTGGGAAAA CCCACAGATGGGTCACTATACTGATAGATATCCTGGGAAAA < 41bp 1 0.566532741538504 1 0.117204070091248 experiment 0.866934516922992 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318718 chr10:118318717 nonsynonymous SNV 0.998 5 20 hm5C_associated_SNPs_30605 0 0 0 0 2 PNLIP chr10:118318795 5'GT 118318795 Upstream 79bp
chr10 118318717 118318717 1 + G A OV 118318729 + 118318709 118318749 41 GTCACTATGCTGATAGATATCCTGGGAAAACAAATGATGTG GTCACTATACTGATAGATATCCTGGGAAAACAAATGATGTG < 41bp 1 0.501886456968536 1 0.568340539932251 experiment 0.996227086062928 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318729 chr10:118318717 nonsynonymous SNV 0.998 5 9 hm5C_associated_SNPs_30606 0 0 0 0 2 PNLIP chr10:118318666 3'AG 118318666 Downstream 52bp
chr10 118318717 118318717 1 + G A OV 118318729 + 118318709 118318749 41 GTCACTATGCTGATAGATATCCTGGGAAAACAAATGATGTG GTCACTATACTGATAGATATCCTGGGAAAACAAATGATGTG < 41bp 1 0.501886456968536 1 0.568340539932251 experiment 0.996227086062928 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318729 chr10:118318717 nonsynonymous SNV 0.998 5 9 hm5C_associated_SNPs_30606 0 0 0 0 2 PNLIP chr10:118318795 5'GT 118318795 Upstream 79bp
chr1 153724847 153724847 1 + T C OV 153724860 + 153724840 153724880 41 AAGATATTATCCATAATCCTCAGGCCTTGAGTCCTCAGTTC AAGATATCATCCATAATCCTCAGGCCTTGAGTCCTCAGTTC < 41bp 1 0.584878546613443 1 0.829707980155945 experiment 0.830242906773114 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout INTS3 ENSG00000143624 CDS Human protein_coding chr1:153724860 chr1:153724847 synonymous SNV . 0 8 hm5C_associated_SNPs_30609 0 0 1 0 2 INTS3 chr1:153724755 3'AG 153724755 Downstream 93bp
chr1 153724847 153724847 1 + T C OV 153724860 + 153724840 153724880 41 AAGATATTATCCATAATCCTCAGGCCTTGAGTCCTCAGTTC AAGATATCATCCATAATCCTCAGGCCTTGAGTCCTCAGTTC < 41bp 1 0.584878546613443 1 0.829707980155945 experiment 0.830242906773114 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout INTS3 ENSG00000143624 CDS Human protein_coding chr1:153724860 chr1:153724847 synonymous SNV . 0 8 hm5C_associated_SNPs_30609 0 0 1 0 2 INTS3 chr1:153724884 5'GT 153724884 Upstream 38bp
chr12 53671331 53671331 1 + T G OV 53671316 + 53671296 53671336 41 GAGGAATTTGAAGTCAATGACCTGAACTATGAAGATAAACT GAGGAATTTGAAGTCAATGACCTGAACTATGAAGAGAAACT < 41bp 1 0.0748237751717975 1 0.0739199221134186 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53671316 chr12:53671331 nonsynonymous SNV 1.000 0 36 hm5C_associated_SNPs_30610 0 0 1 0 1 ESPL1 chr12:53671392 5'GT 53671392 Upstream 62bp
chr3 25542776 25542776 1 + G A OV 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACCAGGAATCGATGCCAATACTGTCAACTCCAGAAGTGCTT < 41bp 1 0.206951015929681 1 0.081779807806015 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542776 nonsynonymous SNV 0.999 5 26 hm5C_associated_SNPs_30611 0 0 1 0 1 RARB chr3:25542814 5'GT 25542814 Upstream 39bp
chr19 50158050 50158050 1 + A C OV 50158043 + 50158023 50158063 41 CTGGGGGGCTGCGGTTCGACCCCCCCCACCCCCACCGGGCT CTGGGGGGCTGCGGTTCGACCCCCCCCCCCCCCACCGGGCT < 41bp 1 0.133970265194745 1 0.198409676551819 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50158043 chr19:50158050 nonsynonymous SNV 0.962 2 28 hm5C_associated_SNPs_30612 0 0 1 0 1 SCAF1 chr19:50158127 5'GT 50158127 Upstream 78bp
chr20 39986958 39986958 1 + G T OV 39986960 + 39986940 39986980 41 GTTTCTGCCCCACGGACAGCCCTTCTATGCTGCCTTTGGGA GTTTCTGCCCCACGGACATCCCTTCTATGCTGCCTTTGGGA < 41bp 1 0.0160447735555366 1 0.186748504638672 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39986960 chr20:39986958 nonsynonymous SNV 0.676 1 19 hm5C_associated_SNPs_30613 0 0 1 2 2 LPIN3 chr20:39986877 3'AG 39986877 Downstream 82bp
chr20 39986958 39986958 1 + G T OV 39986960 + 39986940 39986980 41 GTTTCTGCCCCACGGACAGCCCTTCTATGCTGCCTTTGGGA GTTTCTGCCCCACGGACATCCCTTCTATGCTGCCTTTGGGA < 41bp 1 0.0160447735555366 1 0.186748504638672 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39986960 chr20:39986958 nonsynonymous SNV 0.676 1 19 hm5C_associated_SNPs_30613 0 0 1 2 2 LPIN3 chr20:39986991 5'GT 39986991 Upstream 34bp
chr5 37026373 37026373 1 + A G OV 37026368 + 37026348 37026388 41 ATTCCAGAAACTCTGGTTTACTCCAACTCCACACAATGACA ATTCCAGAAACTCTGGTTTACTCCAGCTCCACACAATGACA < 41bp 1 0.469789095397254 1 0.900192856788635 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NIPBL ENSG00000164190 CDS Human protein_coding chr5:37026368 chr5:37026373 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_30615 0 0 1 0 2 NIPBL chr5:37026331 3'AG 37026331 Downstream 43bp
chr5 37026373 37026373 1 + A G OV 37026368 + 37026348 37026388 41 ATTCCAGAAACTCTGGTTTACTCCAACTCCACACAATGACA ATTCCAGAAACTCTGGTTTACTCCAGCTCCACACAATGACA < 41bp 1 0.469789095397254 1 0.900192856788635 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NIPBL ENSG00000164190 CDS Human protein_coding chr5:37026368 chr5:37026373 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_30615 0 0 1 0 2 NIPBL chr5:37026429 5'GT 37026429 Upstream 57bp
chr19 14674819 14674819 1 + C T OV 14674820 + 14674800 14674840 41 CTAACAGAGTACGCGGGGCCCCTTTTCATCTACCTGCTCTT CTAACAGAGTACGCGGGGCTCCTTTTCATCTACCTGCTCTT < 41bp 1 0.0479729724640359 1 0.0168598592281342 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TECR ENSG00000099797 CDS Human protein_coding chr19:14674820 chr19:14674819 nonsynonymous SNV 0.988 4 20 hm5C_associated_SNPs_30616 0 0 1 0 2 TECR chr19:14674794 3'AG 14674794 Downstream 26bp
chr19 14674819 14674819 1 + C T OV 14674820 + 14674800 14674840 41 CTAACAGAGTACGCGGGGCCCCTTTTCATCTACCTGCTCTT CTAACAGAGTACGCGGGGCTCCTTTTCATCTACCTGCTCTT < 41bp 1 0.0479729724640359 1 0.0168598592281342 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TECR ENSG00000099797 CDS Human protein_coding chr19:14674820 chr19:14674819 nonsynonymous SNV 0.988 4 20 hm5C_associated_SNPs_30616 0 0 1 0 2 TECR chr19:14674909 5'GT 14674909 Upstream 91bp
chr8 27369405 27369405 1 + G C OV 27369415 + 27369395 27369435 41 AGTGACATGAGCCATGGGTACGTGACAGTAAAGGTGAGTCA AGTGACATGACCCATGGGTACGTGACAGTAAAGGTGAGTCA < 41bp 1 0.650441474864302 1 0.20956027507782 experiment 0.699117050271396 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27369415 chr8:27369405 nonsynonymous SNV 0.398 0 11 hm5C_associated_SNPs_30617 0 0 1 0 2 EPHX2 chr8:27369353 3'AG 27369353 Downstream 53bp
chr8 27369405 27369405 1 + G C OV 27369415 + 27369395 27369435 41 AGTGACATGAGCCATGGGTACGTGACAGTAAAGGTGAGTCA AGTGACATGACCCATGGGTACGTGACAGTAAAGGTGAGTCA < 41bp 1 0.650441474864302 1 0.20956027507782 experiment 0.699117050271396 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27369415 chr8:27369405 nonsynonymous SNV 0.398 0 11 hm5C_associated_SNPs_30617 0 0 1 0 2 EPHX2 chr8:27369427 5'GT 27369427 Upstream 23bp
chr1 228468293 228468293 1 + G A OV 228468289 + 228468269 228468309 41 TCCGCAGAGGAGCGCGGCACCCTGGCCCTGCAGTGTGAAGT TCCGCAGAGGAGCGCGGCACCCTGACCCTGCAGTGTGAAGT < 41bp 1 0.0647576229775947 1 0.0270332098007202 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228468289 chr1:228468293 nonsynonymous SNV 0.832 0 25 hm5C_associated_SNPs_30618 0 0 0 0 1 OBSCN chr1:228468231 3'AG 228468231 Downstream 63bp
chr12 112321461 112321461 1 + A C OV 112321465 + 112321445 112321485 41 TTTTACTCCAAACACCACAGCCGGACTATCCCAAAGGATAT TTTTACTCCAAACACCCCAGCCGGACTATCCCAAAGGATAT < 41bp 1 0.358291908171135 1 0.0986407697200775 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPKAPK5 ENSG00000089022 CDS Human protein_coding chr12:112321465 chr12:112321461 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_30620 0 0 1 0 1 MAPKAPK5 chr12:112321385 3'AG 112321385 Downstream 77bp
chr12 112321461 112321461 1 + A C OV 112321470 + 112321450 112321490 41 CTCCAAACACCACAGCCGGACTATCCCAAAGGATATGCGAA CTCCAAACACCCCAGCCGGACTATCCCAAAGGATATGCGAA < 41bp 1 0.0428542775445899 1 0.0657415688037872 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPKAPK5 ENSG00000089022 CDS Human protein_coding chr12:112321470 chr12:112321461 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_30621 0 0 1 0 1 MAPKAPK5 chr12:112321385 3'AG 112321385 Downstream 77bp
chr16 89627459 89627459 1 + G A OV 89627445 + 89627425 89627465 41 CGGCGCGTGGCCACGTGGTTCAACCAGCCGGCCCGTAAGAT CGGCGCGTGGCCACGTGGTTCAACCAGCCGGCCCATAAGAT < 41bp 1 0.297749493251565 1 0.0844106674194336 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627445 chr16:89627459 nonsynonymous SNV 0.922 1 35 hm5C_associated_SNPs_30622 0 0 1 0 1 RPL13 chr16:89627471 5'GT 89627471 Upstream 13bp
chr16 89627459 89627459 1 + G A OV 89627456 + 89627436 89627476 41 CACGTGGTTCAACCAGCCGGCCCGTAAGATCCGCAGGTGAG CACGTGGTTCAACCAGCCGGCCCATAAGATCCGCAGGTGAG < 41bp 1 0.0808691826824552 1 0.156697958707809 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627456 chr16:89627459 nonsynonymous SNV 0.922 1 24 hm5C_associated_SNPs_30623 0 0 1 0 1 RPL13 chr16:89627471 5'GT 89627471 Upstream 13bp
chr16 89627459 89627459 1 + G A OV 89627469 + 89627449 89627489 41 CAGCCGGCCCGTAAGATCCGCAGGTGAGCCCTGCGCTCGGG CAGCCGGCCCATAAGATCCGCAGGTGAGCCCTGCGCTCGGG < 41bp 1 0.728156737384705 1 0.839765787124634 experiment 0.543686525230591 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627469 chr16:89627459 nonsynonymous SNV 0.922 1 11 hm5C_associated_SNPs_30624 0 0 1 0 1 RPL13 chr16:89627471 5'GT 89627471 Upstream 13bp
chr8 124811854 124811854 1 + C G OV 124811871 + 124811851 124811891 41 TGTCCAAAGGTACAAGACTTCGAAAACTGCCAGATATATTT TGTGCAAAGGTACAAGACTTCGAAAACTGCCAGATATATTT < 41bp 1 0.723711511609116 1 0.678473591804504 experiment 0.552576976781769 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124811871 chr8:124811854 nonsynonymous SNV 0.997 1 4 hm5C_associated_SNPs_30627 0 0 1 0 2 FAM91A1 chr8:124811760 3'AG 124811760 Downstream 95bp
chr8 124811854 124811854 1 + C G OV 124811871 + 124811851 124811891 41 TGTCCAAAGGTACAAGACTTCGAAAACTGCCAGATATATTT TGTGCAAAGGTACAAGACTTCGAAAACTGCCAGATATATTT < 41bp 1 0.723711511609116 1 0.678473591804504 experiment 0.552576976781769 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124811871 chr8:124811854 nonsynonymous SNV 0.997 1 4 hm5C_associated_SNPs_30627 0 0 1 0 2 FAM91A1 chr8:124811894 5'GT 124811894 Upstream 41bp
chr9 127982846 127982846 1 + G T OV 127982849 + 127982829 127982869 41 TGGACCACGCCAGAAGTGACCAGCCCCCCACCATCCCCAAG TGGACCACGCCAGAAGTTACCAGCCCCCCACCATCCCCAAG < 41bp 1 0.720974578165327 1 0.772921681404114 experiment 0.558050843669347 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RABEPK ENSG00000136933 CDS Human protein_coding chr9:127982849 chr9:127982846 stoploss 0.663 0 18 hm5C_associated_SNPs_30628 0 0 0 0 1 RABEPK chr9:127982818 3'AG 127982818 Downstream 29bp
chr1 33957275 33957275 1 + G T OV 33957260 + 33957240 33957280 41 ATGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGGCCCCA ATGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGTCCCCA < 41bp 1 0.227649196586164 1 0.054297000169754 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957260 chr1:33957275 nonsynonymous SNV 0.628 0 36 hm5C_associated_SNPs_30629 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 28bp
chr1 33957275 33957275 1 + G T OV 33957261 + 33957241 33957281 41 TGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGGCCCCAG TGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGTCCCCAG < 41bp 1 0.617478189107561 1 0.365035951137543 experiment 0.765043621784878 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957261 chr1:33957275 nonsynonymous SNV 0.628 0 35 hm5C_associated_SNPs_30630 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 28bp
chr1 33957275 33957275 1 + G T OV 33957276 + 33957256 33957296 41 GGGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTC GGGGCCCAGGATTGCAGGGTCCCCAGCTCTGTTCCAGAGTC < 41bp 1 0.527206496340339 1 0.363594114780426 experiment 0.945587007319322 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957276 chr1:33957275 nonsynonymous SNV 0.628 0 20 hm5C_associated_SNPs_30631 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 28bp
chr1 33957275 33957275 1 + G T OV 33957277 + 33957257 33957297 41 GGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCG GGGCCCAGGATTGCAGGGTCCCCAGCTCTGTTCCAGAGTCG < 41bp 1 0.253552329624231 1 0.0716045200824738 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957277 chr1:33957275 nonsynonymous SNV 0.628 0 19 hm5C_associated_SNPs_30632 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 28bp
chr1 33957275 33957275 1 + G T OV 33957278 + 33957258 33957298 41 GGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGT GGCCCAGGATTGCAGGGTCCCCAGCTCTGTTCCAGAGTCGT < 41bp 1 0.149182745444876 1 0.14897146821022 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957278 chr1:33957275 nonsynonymous SNV 0.628 0 18 hm5C_associated_SNPs_30633 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 28bp
chr1 33957275 33957275 1 + G T OV 33957279 + 33957259 33957299 41 GCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGTA GCCCAGGATTGCAGGGTCCCCAGCTCTGTTCCAGAGTCGTA < 41bp 1 0.497559668481181 1 0.264049142599106 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957279 chr1:33957275 nonsynonymous SNV 0.628 0 17 hm5C_associated_SNPs_30634 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 28bp
chr9 35733472 35733472 1 + C G OV 35733471 + 35733451 35733491 41 TTATTCTGCCTGAGACACTTCCTCTCACTAAGGTAAGACTC TTATTCTGCCTGAGACACTTCGTCTCACTAAGGTAAGACTC < 41bp 1 0.131172453198794 1 0.134478688240051 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733471 chr9:35733472 nonsynonymous SNV 0.979 5 22 hm5C_associated_SNPs_30635 0 0 1 0 2 CREB3 chr9:35733393 3'AG 35733393 Downstream 80bp
chr9 35733472 35733472 1 + C G OV 35733471 + 35733451 35733491 41 TTATTCTGCCTGAGACACTTCCTCTCACTAAGGTAAGACTC TTATTCTGCCTGAGACACTTCGTCTCACTAAGGTAAGACTC < 41bp 1 0.131172453198794 1 0.134478688240051 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733471 chr9:35733472 nonsynonymous SNV 0.979 5 22 hm5C_associated_SNPs_30635 0 0 1 0 2 CREB3 chr9:35733482 5'GT 35733482 Upstream 11bp
chr7 100275155 100275155 1 + T C OV 100275144 + 100275124 100275164 41 CACGCCATCCCGCTGCGCTCCTCCTGGGTAATGACCTGTGC CACGCCATCCCGCTGCGCTCCTCCTGGGTAACGACCTGTGC < 41bp 1 0.567876470677547 1 0.672003328800201 experiment 0.864247058644906 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GNB2 ENSG00000172354 CDS Human protein_coding chr7:100275144 chr7:100275155 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_30638 0 0 1 0 1 GNB2 chr7:100275121 3'AG 100275121 Downstream 35bp
chr11 73638333 73638333 1 + G T OV 73638335 + 73638315 73638355 41 ATTCTTGTGTTTTAGGTAGCCACATGGGAGAAGCAGATCTA ATTCTTGTGTTTTAGGTATCCACATGGGAGAAGCAGATCTA < 41bp 1 0.637289323793687 1 0.769887924194336 experiment 0.725421352412626 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PAAF1 ENSG00000175575 CDS Human protein_coding chr11:73638335 chr11:73638333 nonsynonymous SNV 0.998 1 19 hm5C_associated_SNPs_30639 0 0 0 0 1 PAAF1 chr11:73638330 3'AG 73638330 Downstream 4bp
chr1 235543451 235543451 1 + C A OV 235543456 + 235543436 235543476 41 TTTTGCTGGTGTTGTCCCTCCCGTGGCAGGTAAGCAATTAT TTTTGCTGGTGTTGTACCTCCCGTGGCAGGTAAGCAATTAT < 41bp 1 0.176246387672108 1 0.284889161586761 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235543456 chr1:235543451 synonymous SNV . 0 16 hm5C_associated_SNPs_30640 0 0 1 0 1 TBCE chr1:235543464 5'GT 235543464 Upstream 14bp
chrX 70514365 70514365 1 + T C OV 70514364 + 70514344 70514384 41 GACAGATGCAGTGAAGGCTCCTTCCTGCTAACCACGTAAGT GACAGATGCAGTGAAGGCTCCCTCCTGCTAACCACGTAAGT < 41bp 1 0.0353874363981741 1 0.114068984985352 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70514364 chrX:70514365 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_30643 0 0 1 0 1 NONO chrX:70514378 5'GT 70514378 Upstream 14bp
chr6 35436212 35436212 1 + A G OV 35436198 + 35436178 35436218 41 AGTCTCTTTTCCGGTTAGCGCGGCGTGAGAAGCCATGAGGT AGTCTCTTTTCCGGTTAGCGCGGCGTGAGAAGCCGTGAGGT < 41bp 1 0.729334941510059 1 0.904738664627075 experiment 0.541330116979882 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10A ENSG00000198755 CDS Human protein_coding chr6:35436198 chr6:35436212 nonsynonymous SNV 0.621 1 35 hm5C_associated_SNPs_30644 0 0 1 0 1 RPL10A chr6:35436216 5'GT 35436216 Upstream 5bp
chr6 35436212 35436212 1 + A G OV 35436201 + 35436181 35436221 41 CTCTTTTCCGGTTAGCGCGGCGTGAGAAGCCATGAGGTGAG CTCTTTTCCGGTTAGCGCGGCGTGAGAAGCCGTGAGGTGAG < 41bp 1 0.381422416864752 1 0.545650780200958 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10A ENSG00000198755 CDS Human protein_coding chr6:35436201 chr6:35436212 nonsynonymous SNV 0.621 1 32 hm5C_associated_SNPs_30645 0 0 1 0 1 RPL10A chr6:35436216 5'GT 35436216 Upstream 5bp
chr2 32617172 32617172 1 + G C OV 32617180 + 32617160 32617200 41 ATGTAGGCTATAGGTGGGCACAACCAGATCCCATGGCTCAA ATGTAGGCTATACGTGGGCACAACCAGATCCCATGGCTCAA < 41bp 1 0.100123823808229 1 0.0738645195960999 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32617180 chr2:32617172 nonsynonymous SNV 0.999 2 13 hm5C_associated_SNPs_30646 0 0 1 0 2 BIRC6 chr2:32617107 3'AG 32617107 Downstream 66bp
chr2 32617172 32617172 1 + G C OV 32617180 + 32617160 32617200 41 ATGTAGGCTATAGGTGGGCACAACCAGATCCCATGGCTCAA ATGTAGGCTATACGTGGGCACAACCAGATCCCATGGCTCAA < 41bp 1 0.100123823808229 1 0.0738645195960999 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32617180 chr2:32617172 nonsynonymous SNV 0.999 2 13 hm5C_associated_SNPs_30646 0 0 1 0 2 BIRC6 chr2:32617218 5'GT 32617218 Upstream 47bp
chr19 10812854 10812854 1 + C G OV 10812865 + 10812845 10812885 41 GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAATGAGA GGAGGGCGTGCGCTTCCGCTCCCCCTACGACGGCAATGAGA < 41bp 1 0.200787120714418 1 0.0512370765209198 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10812865 chr19:10812854 synonymous SNV . 0 10 hm5C_associated_SNPs_30647 0 0 1 0 2 QTRT1 chr19:10812792 3'AG 10812792 Downstream 63bp
chr19 10812854 10812854 1 + C G OV 10812865 + 10812845 10812885 41 GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAATGAGA GGAGGGCGTGCGCTTCCGCTCCCCCTACGACGGCAATGAGA < 41bp 1 0.200787120714418 1 0.0512370765209198 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10812865 chr19:10812854 synonymous SNV . 0 10 hm5C_associated_SNPs_30647 0 0 1 0 2 QTRT1 chr19:10812930 5'GT 10812930 Upstream 77bp
chr17 41570102 41570102 1 + G A OV 41570095 + 41570075 41570115 41 GTCGAAGCCGAGATCGAAACCGAGATCGAGACAGAGATAGG GTCGAAGCCGAGATCGAAACCGAGATCAAGACAGAGATAGG < 41bp 1 0.792132411852224 1 0.880131244659424 experiment 0.415735176295552 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41570095 chr17:41570102 nonsynonymous SNV 0.590 3 28 hm5C_associated_SNPs_30649 0 0 1 0 1 DHX8 chr17:41570049 3'AG 41570049 Downstream 54bp
chr10 5963488 5963488 1 + C T OV 5963508 + 5963488 5963528 41 CGGGTGACGGAAGGGGAATTCCCTTCAAGGATACATTTGAT TGGGTGACGGAAGGGGAATTCCCTTCAAGGATACATTTGAT < 41bp 1 0.103022393530957 1 0.520311057567596 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963508 chr10:5963488 nonsynonymous SNV 0.787 5 1 hm5C_associated_SNPs_30653 0 0 1 0 2 FBXO18 chr10:5963411 3'AG 5963411 Downstream 78bp
chr10 5963488 5963488 1 + C T OV 5963508 + 5963488 5963528 41 CGGGTGACGGAAGGGGAATTCCCTTCAAGGATACATTTGAT TGGGTGACGGAAGGGGAATTCCCTTCAAGGATACATTTGAT < 41bp 1 0.103022393530957 1 0.520311057567596 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963508 chr10:5963488 nonsynonymous SNV 0.787 5 1 hm5C_associated_SNPs_30653 0 0 1 0 2 FBXO18 chr10:5963532 5'GT 5963532 Upstream 45bp
chr1 44878386 44878386 1 + A T OV 44878373 + 44878353 44878393 41 ATCGGGAAGCCTCATCTAGCCCAGAGGATCGGAATGACAGA ATCGGGAAGCCTCATCTAGCCCAGAGGATCGGATTGACAGA < 41bp 1 0.527751864673167 1 0.148510247468948 experiment 0.944496270653665 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878373 chr1:44878386 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_30654 0 0 1 0 1 RNF220 chr1:44878394 5'GT 44878394 Upstream 9bp
chr1 44878386 44878386 1 + A T OV 44878382 + 44878362 44878402 41 CCTCATCTAGCCCAGAGGATCGGAATGACAGATGTAAGTAC CCTCATCTAGCCCAGAGGATCGGATTGACAGATGTAAGTAC < 41bp 1 0.389342592205928 1 0.313379347324371 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878382 chr1:44878386 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_30655 0 0 1 0 1 RNF220 chr1:44878394 5'GT 44878394 Upstream 9bp
chr1 156096688 156096688 1 + C T OV 156096700 + 156096680 156096720 41 GACACGGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGG GACACGGGTGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGG < 41bp 1 0.201616661529678 1 0.150739818811417 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096700 chr1:156096688 nonsynonymous SNV 0.002 2 9 hm5C_associated_SNPs_30656 0 0 0 0 1 LMNA chr1:156096706 5'GT 156096706 Upstream 19bp
chr1 156096688 156096688 1 + C T OV 156096703 + 156096683 156096723 41 ACGGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATT ACGGGTGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATT < 41bp 1 0.110684250929235 1 0.10418489575386 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096703 chr1:156096688 nonsynonymous SNV 0.002 2 6 hm5C_associated_SNPs_30657 0 0 0 0 1 LMNA chr1:156096706 5'GT 156096706 Upstream 19bp
chr1 156096688 156096688 1 + C T OV 156096704 + 156096684 156096724 41 CGGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTT CGGGTGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTT < 41bp 1 0.166948080654243 1 0.0955112278461456 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096704 chr1:156096688 nonsynonymous SNV 0.002 2 5 hm5C_associated_SNPs_30658 0 0 0 0 1 LMNA chr1:156096706 5'GT 156096706 Upstream 19bp
chr1 156096688 156096688 1 + C T OV 156096705 + 156096685 156096725 41 GGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTTC GGGTGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTTC < 41bp 1 0.383114337502063 1 0.0995477437973022 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096705 chr1:156096688 nonsynonymous SNV 0.002 2 4 hm5C_associated_SNPs_30659 0 0 0 0 1 LMNA chr1:156096706 5'GT 156096706 Upstream 19bp
chr1 171763639 171763639 1 + G T OV 171763629 + 171763609 171763649 41 CCCAGCATTTGTGGAGCAATCTTTTCTACAGAAGGTTAAAA CCCAGCATTTGTGGAGCAATCTTTTCTACATAAGGTTAAAA < 41bp 1 0.136525446984806 1 0.0725292563438416 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171763629 chr1:171763639 nonsynonymous SNV 0.993 4 31 hm5C_associated_SNPs_30661 0 0 0 0 1 METTL13 chr1:171763667 5'GT 171763667 Upstream 29bp
chr13 114175027 114175027 1 + C A OV 114175039 + 114175019 114175059 41 CATACAGGCGGGCGCCAGTGCATCTTCTAGGTAAACGCTTT CATACAGGAGGGCGCCAGTGCATCTTCTAGGTAAACGCTTT < 41bp 1 0.214281762553777 1 0.257477909326553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114175039 chr13:114175027 nonsynonymous SNV 0.092 2 9 hm5C_associated_SNPs_30662 0 0 1 0 2 TMCO3 chr13:114174931 3'AG 114174931 Downstream 97bp
chr13 114175027 114175027 1 + C A OV 114175039 + 114175019 114175059 41 CATACAGGCGGGCGCCAGTGCATCTTCTAGGTAAACGCTTT CATACAGGAGGGCGCCAGTGCATCTTCTAGGTAAACGCTTT < 41bp 1 0.214281762553777 1 0.257477909326553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114175039 chr13:114175027 nonsynonymous SNV 0.092 2 9 hm5C_associated_SNPs_30662 0 0 1 0 2 TMCO3 chr13:114175048 5'GT 114175048 Upstream 22bp
chr19 13063845 13063845 1 + G C OV 13063834 + 13063814 13063854 41 AGAACTTGGCTGCCAACTTCCTCCTGAGTCAGAACTTTGAT AGAACTTGGCTGCCAACTTCCTCCTGAGTCACAACTTTGAT < 41bp 1 0.451576358789549 1 0.573380470275879 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD23A ENSG00000179262 CDS Human protein_coding chr19:13063834 chr19:13063845 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_30663 0 0 1 0 1 RAD23A chr19:13063750 3'AG 13063750 Downstream 96bp
chr12 52314571 52314571 1 + G T OV 52314578 + 52314558 52314598 41 GCTCAGATGATGCGGGAGTGCTGGTACCCAAACCCCTCTGC GCTCAGATGATGCTGGAGTGCTGGTACCCAAACCCCTCTGC < 41bp 1 0.791324799203257 1 0.294841468334198 experiment 0.417350401593487 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52314578 chr12:52314571 nonsynonymous SNV 0.999 1 14 hm5C_associated_SNPs_30664 0 0 0 0 1 ACVRL1 chr12:52314543 3'AG 52314543 Downstream 29bp
chr12 69119562 69119562 1 + T C OV 69119560 + 69119540 69119580 41 ATAGTTCAAAAGTTTCTTATCCTGGGAGACATTGATGGTAA ATAGTTCAAAAGTTTCTTATCCCGGGAGACATTGATGGTAA < 41bp 1 0.649168676616222 1 0.431593060493469 experiment 0.701662646767556 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69119560 chr12:69119562 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_30665 0 0 1 0 2 NUP107 chr12:69119507 3'AG 69119507 Downstream 56bp
chr12 69119562 69119562 1 + T C OV 69119560 + 69119540 69119580 41 ATAGTTCAAAAGTTTCTTATCCTGGGAGACATTGATGGTAA ATAGTTCAAAAGTTTCTTATCCCGGGAGACATTGATGGTAA < 41bp 1 0.649168676616222 1 0.431593060493469 experiment 0.701662646767556 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69119560 chr12:69119562 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_30665 0 0 1 0 2 NUP107 chr12:69119576 5'GT 69119576 Upstream 15bp
chr7 150769146 150769146 1 + T C OV 150769166 + 150769146 150769186 41 TCCCGCTTCACCCAGGAGATCTTCGCCTTCTTGATCTCACT CCCCGCTTCACCCAGGAGATCTTCGCCTTCTTGATCTCACT < 41bp 1 0.0654912471467895 1 0.0467804372310638 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150769166 chr7:150769146 nonsynonymous SNV 0.995 2 1 hm5C_associated_SNPs_30669 0 0 1 0 1 SLC4A2 chr7:150769223 5'GT 150769223 Upstream 78bp
chr18 60642777 60642777 1 + G A OV 60642776 + 60642756 60642796 41 TCTCTGTCGAAATGGAAAGCCGCTGCCTCTGTCCAGATCTT TCTCTGTCGAAATGGAAAGCCACTGCCTCTGTCCAGATCTT < 41bp 1 0.0976749863749848 1 0.167920917272568 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PHLPP1 ENSG00000081913 CDS Human protein_coding chr18:60642776 chr18:60642777 synonymous SNV . 0 22 hm5C_associated_SNPs_30670 0 0 1 0 1 PHLPP1 chr18:60642858 5'GT 60642858 Upstream 82bp
chr16 57144714 57144714 1 + G C OV 57144695 + 57144675 57144715 41 GGGTGCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGT GGGTGCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCACT < 41bp 1 0.212488596220942 1 0.304171293973923 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144695 chr16:57144714 nonsynonymous SNV 0.793 1 40 hm5C_associated_SNPs_30671 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 95bp
chr16 57144714 57144714 1 + G C OV 57144698 + 57144678 57144718 41 TGCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATT TGCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCACTATT < 41bp 1 0.194201838848263 1 0.453797340393066 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144698 chr16:57144714 nonsynonymous SNV 0.793 1 37 hm5C_associated_SNPs_30672 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 95bp
chr16 57144714 57144714 1 + G C OV 57144699 + 57144679 57144719 41 GCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATTG GCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCACTATTG < 41bp 1 0.747929796451586 1 0.73625648021698 experiment 0.504140407096828 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144699 chr16:57144714 nonsynonymous SNV 0.793 1 36 hm5C_associated_SNPs_30673 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 95bp
chr16 57144714 57144714 1 + G C OV 57144700 + 57144680 57144720 41 CCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATTGC CCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCACTATTGC < 41bp 1 0.353218136848383 1 0.414362460374832 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144700 chr16:57144714 nonsynonymous SNV 0.793 1 35 hm5C_associated_SNPs_30674 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 95bp
chr16 57144714 57144714 1 + G C OV 57144701 + 57144681 57144721 41 CCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATTGCG CCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCACTATTGCG < 41bp 1 0.288936815574768 1 0.447475254535675 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144701 chr16:57144714 nonsynonymous SNV 0.793 1 34 hm5C_associated_SNPs_30675 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 95bp
chr1 22336283 22336283 1 + G T OV 22336263 + 22336243 22336283 41 TGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGG TGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGT < 41bp 1 0.6033782445282 1 0.206564635038376 experiment 0.793243510943599 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336263 chr1:22336283 nonsynonymous SNV 0.244 4 41 hm5C_associated_SNPs_30676 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 68bp
chr1 22336283 22336283 1 + G T OV 22336266 + 22336246 22336286 41 CAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTG CAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGTCTG < 41bp 1 0.128202536142532 1 0.0835152566432953 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336266 chr1:22336283 nonsynonymous SNV 0.244 4 38 hm5C_associated_SNPs_30677 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 68bp
chr1 22336283 22336283 1 + G T OV 22336274 + 22336254 22336294 41 CGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCA CGGTGTGACCAGCTTTGTTTCTGCCTTTGTCTGCAACTTCA < 41bp 1 0.542835693875753 1 0.0516175627708435 experiment 0.914328612248495 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336274 chr1:22336283 nonsynonymous SNV 0.244 4 30 hm5C_associated_SNPs_30678 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 68bp
chr1 22336283 22336283 1 + G T OV 22336277 + 22336257 22336297 41 TGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCT TGTGACCAGCTTTGTTTCTGCCTTTGTCTGCAACTTCATCT < 41bp 1 0.0514903484355077 1 0.0134157836437225 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336277 chr1:22336283 nonsynonymous SNV 0.244 4 27 hm5C_associated_SNPs_30679 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 68bp
chr1 22336283 22336283 1 + G T OV 22336278 + 22336258 22336298 41 GTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCTG GTGACCAGCTTTGTTTCTGCCTTTGTCTGCAACTTCATCTG < 41bp 1 0.278412149859528 1 0.0254333019256592 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336278 chr1:22336283 nonsynonymous SNV 0.244 4 26 hm5C_associated_SNPs_30680 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 68bp
chr1 22336283 22336283 1 + G T OV 22336287 + 22336267 22336307 41 TTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCAC TTTGTTTCTGCCTTTGTCTGCAACTTCATCTGGAAGCCCAC < 41bp 1 0.286907851353956 1 0.0899359583854675 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336287 chr1:22336283 nonsynonymous SNV 0.244 4 17 hm5C_associated_SNPs_30681 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 68bp
chr1 22336283 22336283 1 + G T OV 22336290 + 22336270 22336310 41 GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT GTTTCTGCCTTTGTCTGCAACTTCATCTGGAAGCCCACGGT < 41bp 1 0.532012517172376 1 0.527647137641907 experiment 0.935974965655247 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336290 chr1:22336283 nonsynonymous SNV 0.244 4 14 hm5C_associated_SNPs_30682 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 68bp
chr1 22336283 22336283 1 + G T OV 22336293 + 22336273 22336313 41 TCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGTGTT TCTGCCTTTGTCTGCAACTTCATCTGGAAGCCCACGGTGTT < 41bp 1 0.291637789884949 1 0.335430145263672 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336293 chr1:22336283 nonsynonymous SNV 0.244 4 11 hm5C_associated_SNPs_30683 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 68bp
chr1 22336283 22336283 1 + G T OV 22336303 + 22336283 22336323 41 GCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTC TCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTC < 41bp 1 0.170546190664691 1 0.155985921621323 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336303 chr1:22336283 nonsynonymous SNV 0.244 4 1 hm5C_associated_SNPs_30684 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 68bp
chr3 183898998 183898998 1 + G T OV 183899018 + 183898998 183899038 41 GATGAAACAAGCAAGAGGTGCCTGAGGCAGGAGAGCTGGTG TATGAAACAAGCAAGAGGTGCCTGAGGCAGGAGAGCTGGTG < 41bp 1 0.165504967819538 1 0.176973193883896 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899018 chr3:183898998 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_30685 0 0 1 0 1 AP2M1 chr3:183899014 5'GT 183899014 Upstream 17bp
chr3 61975339 61975339 1 + C G OV 61975349 + 61975329 61975369 41 CTAGTGTCAGCTGTGGGGGCCGTCACCAGTCTCCTATTGAC CTAGTGTCAGGTGTGGGGGCCGTCACCAGTCTCCTATTGAC < 41bp 1 0.181087199693217 1 0.216757446527481 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:61975349 chr3:61975339 nonsynonymous SNV 0.992 0 11 hm5C_associated_SNPs_30686 0 0 1 0 1 PTPRG chr3:61975299 3'AG 61975299 Downstream 41bp
chr1 6692477 6692477 1 + G C OV 6692470 + 6692450 6692490 41 GGTCCTCCCTGAGGCGGGGGCCGGAGAGGACAGTCCTGGGA GGTCCTCCCTGAGGCGGGGGCCGGAGACGACAGTCCTGGGA < 41bp 1 0.72212974952296 1 0.768636226654053 experiment 0.555740500954079 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THAP3 ENSG00000041988 CDS Human protein_coding chr1:6692470 chr1:6692477 nonsynonymous SNV 0.001 1 28 hm5C_associated_SNPs_30687 0 0 0 0 3 THAP3 chr1:6692430 3'AG 6692430 Downstream 48bp
chr1 6692477 6692477 1 + G C OV 6692470 + 6692450 6692490 41 GGTCCTCCCTGAGGCGGGGGCCGGAGAGGACAGTCCTGGGA GGTCCTCCCTGAGGCGGGGGCCGGAGACGACAGTCCTGGGA < 41bp 1 0.72212974952296 1 0.768636226654053 experiment 0.555740500954079 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THAP3 ENSG00000041988 CDS Human protein_coding chr1:6692470 chr1:6692477 nonsynonymous SNV 0.001 1 28 hm5C_associated_SNPs_30687 0 0 0 0 3 THAP3 chr1:6692451 3'AG 6692451 Downstream 27bp
chr1 6692477 6692477 1 + G C OV 6692470 + 6692450 6692490 41 GGTCCTCCCTGAGGCGGGGGCCGGAGAGGACAGTCCTGGGA GGTCCTCCCTGAGGCGGGGGCCGGAGACGACAGTCCTGGGA < 41bp 1 0.72212974952296 1 0.768636226654053 experiment 0.555740500954079 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THAP3 ENSG00000041988 CDS Human protein_coding chr1:6692470 chr1:6692477 nonsynonymous SNV 0.001 1 28 hm5C_associated_SNPs_30687 0 0 0 0 3 THAP3 chr1:6692555 5'GT 6692555 Upstream 79bp
chr10 128830535 128830535 1 + C G OV 128830517 + 128830497 128830537 41 AGCATGCAGAGCCTTGGGAGCTGCACCATTAGCAAGGACTC AGCATGCAGAGCCTTGGGAGCTGCACCATTAGCAAGGAGTC < 41bp 1 0.424968999711291 1 0.333247661590576 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:128830517 chr10:128830535 nonsynonymous SNV 0.983 4 39 hm5C_associated_SNPs_30688 0 0 1 0 1 DOCK1 chr10:128830584 5'GT 128830584 Upstream 50bp
chr7 103006586 103006586 1 + T G OV 103006582 + 103006562 103006602 41 ACAAAAAAAGCCTGCCTTATCTTCTTTGATGAAATTGATGC ACAAAAAAAGCCTGCCTTATCTTCGTTGATGAAATTGATGC < 41bp 1 0.637123338320682 1 0.395138263702393 experiment 0.725753323358636 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMC2 ENSG00000161057 CDS Human protein_coding chr7:103006582 chr7:103006586 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_30689 0 0 0 0 2 PSMC2 chr7:103006523 3'AG 103006523 Downstream 64bp
chr7 103006586 103006586 1 + T G OV 103006582 + 103006562 103006602 41 ACAAAAAAAGCCTGCCTTATCTTCTTTGATGAAATTGATGC ACAAAAAAAGCCTGCCTTATCTTCGTTGATGAAATTGATGC < 41bp 1 0.637123338320682 1 0.395138263702393 experiment 0.725753323358636 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMC2 ENSG00000161057 CDS Human protein_coding chr7:103006582 chr7:103006586 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_30689 0 0 0 0 2 PSMC2 chr7:103006610 5'GT 103006610 Upstream 25bp
chr12 57569703 57569703 1 + C T OV 57569717 + 57569697 57569737 41 TTCAAGCCGTTCATCATTTTCTCCAACCGCCATGAAATCCG TTCAAGTCGTTCATCATTTTCTCCAACCGCCATGAAATCCG < 41bp 1 0.361698761612018 1 0.968522071838379 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57569717 chr12:57569703 nonsynonymous SNV 0.998 5 7 hm5C_associated_SNPs_30690 0 0 0 0 1 LRP1 chr12:57569692 3'AG 57569692 Downstream 12bp
chr12 57911116 57911116 1 + A C OV 57911135 + 57911115 57911155 41 CAGGTCCTCATACCAGGCTTCCAGCTCCCAGCTGGACAGTG CCGGTCCTCATACCAGGCTTCCAGCTCCCAGCTGGACAGTG < 41bp 1 0.156504845694194 1 0.0404290556907654 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDIT3 ENSG00000175197 CDS Human protein_coding chr12:57911135 chr12:57911116 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_30692 0 0 0 0 1 DDIT3 chr12:57911066 3'AG 57911066 Downstream 51bp
chr1 156202165 156202165 1 + G C OV 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGCGATCACACAGCAAATCTATGACAAGTTTATA < 41bp 1 0.0879671206532104 1 0.242846101522446 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202165 nonsynonymous SNV 0.825 0 14 hm5C_associated_SNPs_30695 0 0 1 3 2 PMF1;PMF1-BGLAP chr1:156202111 3'AG 156202111 Downstream 55bp
chr1 156202165 156202165 1 + G C OV 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGCGATCACACAGCAAATCTATGACAAGTTTATA < 41bp 1 0.0879671206532104 1 0.242846101522446 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202165 nonsynonymous SNV 0.825 0 14 hm5C_associated_SNPs_30695 0 0 1 3 2 PMF1;PMF1-BGLAP chr1:156202216 5'GT 156202216 Upstream 52bp
chr5 85915260 85915260 1 + G A OV 85915269 + 85915249 85915289 41 CCTTCCTTGTAGTAAGACACCAACTGCTTAAAACATAAGGA CCTTCCTTGTAATAAGACACCAACTGCTTAAAACATAAGGA < 41bp 1 0.32122180888525 1 0.415318995714188 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COX7C ENSG00000127184;ENSG00000127184 exonic;splicing Human protein_coding chr5:85915269 chr5:85915260 nonsynonymous SNV 0.707 2 12 hm5C_associated_SNPs_30696 0 0 1 0 2 COX7C chr5:85915170 3'AG 85915170 Downstream 91bp
chr5 85915260 85915260 1 + G A OV 85915269 + 85915249 85915289 41 CCTTCCTTGTAGTAAGACACCAACTGCTTAAAACATAAGGA CCTTCCTTGTAATAAGACACCAACTGCTTAAAACATAAGGA < 41bp 1 0.32122180888525 1 0.415318995714188 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COX7C ENSG00000127184;ENSG00000127184 exonic;splicing Human protein_coding chr5:85915269 chr5:85915260 nonsynonymous SNV 0.707 2 12 hm5C_associated_SNPs_30696 0 0 1 0 2 COX7C chr5:85915313 5'GT 85915313 Upstream 54bp
chrX 48564750 48564750 1 + A G OV 48564763 + 48564743 48564783 41 GACGTGTACACCGTGGATGCCGCCTACTATGGCAACATCTC GACGTGTGCACCGTGGATGCCGCCTACTATGGCAACATCTC < 41bp 1 0.295620423061307 1 0.439867913722992 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SUV39H1 ENSG00000101945 CDS Human protein_coding chrX:48564763 chrX:48564750 nonsynonymous SNV 0.250 4 8 hm5C_associated_SNPs_30697 0 0 1 0 1 SUV39H1 chrX:48564656 3'AG 48564656 Downstream 95bp
chr6 43188302 43188302 1 + C A OV 43188295 + 43188275 43188315 41 CCCGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC CCCGCCCAGCCCACCGGAGCCTTCATTAGTGCCATCGTCTC < 41bp 1 0.490195021063726 1 0.691015958786011 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188295 chr6:43188302 nonsynonymous SNV 0.987 1 28 hm5C_associated_SNPs_30704 0 0 0 0 1 CUL9 chr6:43188337 5'GT 43188337 Upstream 36bp
chr8 68087634 68087634 1 + G C OV 68087626 + 68087606 68087646 41 AGCAAGCCCTGCTAAGAGAGCAGCAGAAGAGGCTGAACAGA AGCAAGCCCTGCTAAGAGAGCAGCAGAACAGGCTGAACAGA < 41bp 1 0.72079503346996 1 0.455138504505157 experiment 0.55840993306008 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68087626 chr8:68087634 nonsynonymous SNV 0.975 1 29 hm5C_associated_SNPs_30707 0 0 1 0 1 CSPP1 chr8:68087671 5'GT 68087671 Upstream 38bp
chr1 23240153 23240153 1 + C A OV 23240154 + 23240134 23240174 41 TGCTCTATCCACTGCAGGGCCAGCCACTCGCCAGGAGGCCA TGCTCTATCCACTGCAGGGACAGCCACTCGCCAGGAGGCCA < 41bp 1 0.270835706635906 1 0.120883882045746 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23240154 chr1:23240153 synonymous SNV . 0 20 hm5C_associated_SNPs_30709 0 0 0 0 1 EPHB2 chr1:23240151 3'AG 23240151 Downstream 3bp
chr1 23240153 23240153 1 + C A OV 23240157 + 23240137 23240177 41 TCTATCCACTGCAGGGCCAGCCACTCGCCAGGAGGCCACGG TCTATCCACTGCAGGGACAGCCACTCGCCAGGAGGCCACGG < 41bp 1 0.150665966754958 1 0.120563864707947 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23240157 chr1:23240153 synonymous SNV . 0 17 hm5C_associated_SNPs_30710 0 0 0 0 1 EPHB2 chr1:23240151 3'AG 23240151 Downstream 3bp
chr5 54640990 54640990 1 + A G OV 54640986 + 54640966 54641006 41 TCGAGATGCAGGTGATTTGGCCAAAGGAGACCAGAAAGGGC TCGAGATGCAGGTGATTTGGCCAAGGGAGACCAGAAAGGGC < 41bp 1 0.382410541466406 1 0.783478975296021 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54640986 chr5:54640990 synonymous SNV . 0 25 hm5C_associated_SNPs_30712 0 0 1 0 1 SKIV2L2 chr5:54641024 5'GT 54641024 Upstream 35bp
chr5 54640990 54640990 1 + A G OV 54640997 + 54640977 54641017 41 GTGATTTGGCCAAAGGAGACCAGAAAGGGCGGAAAGGAGGA GTGATTTGGCCAAGGGAGACCAGAAAGGGCGGAAAGGAGGA < 41bp 1 0.741182006603864 1 0.510681331157684 experiment 0.517635986792272 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54640997 chr5:54640990 synonymous SNV . 0 14 hm5C_associated_SNPs_30713 0 0 1 0 1 SKIV2L2 chr5:54641024 5'GT 54641024 Upstream 35bp
chr5 54640990 54640990 1 + A G OV 54641006 + 54640986 54641026 41 CCAAAGGAGACCAGAAAGGGCGGAAAGGAGGAACAAAAGGT CCAAGGGAGACCAGAAAGGGCGGAAAGGAGGAACAAAAGGT < 41bp 1 0.703323149571363 1 0.392305910587311 experiment 0.593353700857274 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54641006 chr5:54640990 synonymous SNV . 0 5 hm5C_associated_SNPs_30714 0 0 1 0 1 SKIV2L2 chr5:54641024 5'GT 54641024 Upstream 35bp
chr8 36692369 36692369 1 + T A OV 36692357 + 36692337 36692377 41 AATCCTTTGTGCAGTGATTCCCATGCTGAAGATATTTCCAA AATCCTTTGTGCAGTGATTCCCATGCTGAAGAAATTTCCAA < 41bp 1 0.137233623942797 1 0.165495276451111 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36692357 chr8:36692369 nonsynonymous SNV 0.287 3 33 hm5C_associated_SNPs_30715 0 0 0 0 2 KCNU1 chr8:36692304 3'AG 36692304 Downstream 66bp
chr8 36692369 36692369 1 + T A OV 36692357 + 36692337 36692377 41 AATCCTTTGTGCAGTGATTCCCATGCTGAAGATATTTCCAA AATCCTTTGTGCAGTGATTCCCATGCTGAAGAAATTTCCAA < 41bp 1 0.137233623942797 1 0.165495276451111 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36692357 chr8:36692369 nonsynonymous SNV 0.287 3 33 hm5C_associated_SNPs_30715 0 0 0 0 2 KCNU1 chr8:36692386 5'GT 36692386 Upstream 18bp
chr14 75746612 75746612 1 + C A OV 75746594 + 75746574 75746614 41 TTCTAGGACTTCTGCACGGACCTGGCCGTCTCCAGTGCCAA TTCTAGGACTTCTGCACGGACCTGGCCGTCTCCAGTGCAAA < 41bp 1 0.131059507636095 1 0.0769361257553101 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746594 chr14:75746612 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_30717 0 0 0 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 33bp
chr14 75746612 75746612 1 + C A OV 75746595 + 75746575 75746615 41 TCTAGGACTTCTGCACGGACCTGGCCGTCTCCAGTGCCAAC TCTAGGACTTCTGCACGGACCTGGCCGTCTCCAGTGCAAAC < 41bp 1 0.449380037380554 1 0.102610349655151 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746595 chr14:75746612 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_30718 0 0 0 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 33bp
chr14 75746612 75746612 1 + C A OV 75746599 + 75746579 75746619 41 GGACTTCTGCACGGACCTGGCCGTCTCCAGTGCCAACTTCA GGACTTCTGCACGGACCTGGCCGTCTCCAGTGCAAACTTCA < 41bp 1 0.0499116177045971 1 0.0486030578613281 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746599 chr14:75746612 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_30719 0 0 0 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 33bp
chr14 75746612 75746612 1 + C A OV 75746600 + 75746580 75746620 41 GACTTCTGCACGGACCTGGCCGTCTCCAGTGCCAACTTCAT GACTTCTGCACGGACCTGGCCGTCTCCAGTGCAAACTTCAT < 41bp 1 0.0611694523079882 1 0.0560482144355774 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746600 chr14:75746612 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_30720 0 0 0 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 33bp
chr14 75746612 75746612 1 + C A OV 75746605 + 75746585 75746625 41 CTGCACGGACCTGGCCGTCTCCAGTGCCAACTTCATTCCCA CTGCACGGACCTGGCCGTCTCCAGTGCAAACTTCATTCCCA < 41bp 1 0.394454235130821 1 0.521694481372833 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746605 chr14:75746612 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_30721 0 0 0 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 33bp
chr14 75746612 75746612 1 + C A OV 75746606 + 75746586 75746626 41 TGCACGGACCTGGCCGTCTCCAGTGCCAACTTCATTCCCAC TGCACGGACCTGGCCGTCTCCAGTGCAAACTTCATTCCCAC < 41bp 1 0.494801840783537 1 0.904987812042236 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746606 chr14:75746612 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_30722 0 0 0 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 33bp
chr14 75746612 75746612 1 + C A OV 75746611 + 75746591 75746631 41 GGACCTGGCCGTCTCCAGTGCCAACTTCATTCCCACGGTCA GGACCTGGCCGTCTCCAGTGCAAACTTCATTCCCACGGTCA < 41bp 1 0.171984076118635 1 0.0549639463424683 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746611 chr14:75746612 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_30723 0 0 0 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 33bp
chr14 75746612 75746612 1 + C A OV 75746615 + 75746595 75746635 41 CTGGCCGTCTCCAGTGCCAACTTCATTCCCACGGTCACTGC CTGGCCGTCTCCAGTGCAAACTTCATTCCCACGGTCACTGC < 41bp 1 0.666686339896646 1 0.470567584037781 experiment 0.666627320206708 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746615 chr14:75746612 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_30724 0 0 0 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 33bp
chr14 75746612 75746612 1 + C A OV 75746618 + 75746598 75746638 41 GCCGTCTCCAGTGCCAACTTCATTCCCACGGTCACTGCCAT GCCGTCTCCAGTGCAAACTTCATTCCCACGGTCACTGCCAT < 41bp 1 0.0326212388589641 1 0.277205944061279 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746618 chr14:75746612 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_30725 0 0 0 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 33bp
chr12 6979505 6979505 1 + C G OV 6979504 + 6979484 6979524 41 CTTCCTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGG CTTCCTTGTGGGTGGTGCTTCGCTCAAGCCCGAATTCGTGG < 41bp 1 0.353922349908518 1 0.0702081322669983 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979504 chr12:6979505 synonymous SNV . 0 22 hm5C_associated_SNPs_30726 0 0 1 0 1 TPI1 chr12:6979429 3'AG 6979429 Downstream 77bp
chr12 6979505 6979505 1 + C G OV 6979508 + 6979488 6979528 41 CTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGGACAT CTTGTGGGTGGTGCTTCGCTCAAGCCCGAATTCGTGGACAT < 41bp 1 0.590385239206458 1 0.493698328733444 experiment 0.819229521587084 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979508 chr12:6979505 synonymous SNV . 0 18 hm5C_associated_SNPs_30727 0 0 1 0 1 TPI1 chr12:6979429 3'AG 6979429 Downstream 77bp
chr1 29435931 29435931 1 + C T OV 29435945 + 29435925 29435965 41 CACCACCACAACTCAAATTACCAAGGTAACAGACCAGCTAG CACCACTACAACTCAAATTACCAAGGTAACAGACCAGCTAG < 41bp 1 0.334745264538467 1 0.354248642921448 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EPB41 ENSG00000159023 CDS Human protein_coding chr1:29435945 chr1:29435931 synonymous SNV . 0 7 hm5C_associated_SNPs_30728 0 0 1 0 2 EPB41 chr1:29435848 3'AG 29435848 Downstream 84bp
chr1 29435931 29435931 1 + C T OV 29435945 + 29435925 29435965 41 CACCACCACAACTCAAATTACCAAGGTAACAGACCAGCTAG CACCACTACAACTCAAATTACCAAGGTAACAGACCAGCTAG < 41bp 1 0.334745264538467 1 0.354248642921448 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EPB41 ENSG00000159023 CDS Human protein_coding chr1:29435945 chr1:29435931 synonymous SNV . 0 7 hm5C_associated_SNPs_30728 0 0 1 0 2 EPB41 chr1:29435949 5'GT 29435949 Upstream 19bp
chr1 29435931 29435931 1 + C T OV 29435946 + 29435926 29435966 41 ACCACCACAACTCAAATTACCAAGGTAACAGACCAGCTAGA ACCACTACAACTCAAATTACCAAGGTAACAGACCAGCTAGA < 41bp 1 0.559952537764351 1 0.71496057510376 experiment 0.880094924471298 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EPB41 ENSG00000159023 CDS Human protein_coding chr1:29435946 chr1:29435931 synonymous SNV . 0 6 hm5C_associated_SNPs_30729 0 0 1 0 2 EPB41 chr1:29435848 3'AG 29435848 Downstream 84bp
chr1 29435931 29435931 1 + C T OV 29435946 + 29435926 29435966 41 ACCACCACAACTCAAATTACCAAGGTAACAGACCAGCTAGA ACCACTACAACTCAAATTACCAAGGTAACAGACCAGCTAGA < 41bp 1 0.559952537764351 1 0.71496057510376 experiment 0.880094924471298 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EPB41 ENSG00000159023 CDS Human protein_coding chr1:29435946 chr1:29435931 synonymous SNV . 0 6 hm5C_associated_SNPs_30729 0 0 1 0 2 EPB41 chr1:29435949 5'GT 29435949 Upstream 19bp
chr22 41922335 41922335 1 + G A OV 41922331 + 41922311 41922351 41 TGGCTCAAGTTCCGTGGGCACTTGGATAACATCTCCAACAA TGGCTCAAGTTCCGTGGGCACTTGAATAACATCTCCAACAA < 41bp 1 0.697292815064042 1 0.655420243740082 experiment 0.605414369871917 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41922331 chr22:41922335 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_30730 0 0 1 0 1 ACO2 chr22:41922266 3'AG 41922266 Downstream 70bp
chr11 114273569 114273569 1 + A G OV 114273562 + 114273542 114273582 41 CATTTTAGGAAGTAGTCATGCCCCACAAGATGTCAGTTTGT CATTTTAGGAAGTAGTCATGCCCCACAGGATGTCAGTTTGT < 41bp 1 0.517580575030032 1 0.064616322517395 experiment 0.964838849939936 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273562 chr11:114273569 nonsynonymous SNV . 0 28 hm5C_associated_SNPs_30731 0 0 1 0 3 RBM7 chr11:114273550 3'AG 114273550 Downstream 20bp
chr11 114273569 114273569 1 + A G OV 114273562 + 114273542 114273582 41 CATTTTAGGAAGTAGTCATGCCCCACAAGATGTCAGTTTGT CATTTTAGGAAGTAGTCATGCCCCACAGGATGTCAGTTTGT < 41bp 1 0.517580575030032 1 0.064616322517395 experiment 0.964838849939936 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273562 chr11:114273569 nonsynonymous SNV . 0 28 hm5C_associated_SNPs_30731 0 0 1 0 3 RBM7 chr11:114273554 3'AG 114273554 Downstream 16bp
chr11 114273569 114273569 1 + A G OV 114273562 + 114273542 114273582 41 CATTTTAGGAAGTAGTCATGCCCCACAAGATGTCAGTTTGT CATTTTAGGAAGTAGTCATGCCCCACAGGATGTCAGTTTGT < 41bp 1 0.517580575030032 1 0.064616322517395 experiment 0.964838849939936 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273562 chr11:114273569 nonsynonymous SNV . 0 28 hm5C_associated_SNPs_30731 0 0 1 0 3 RBM7 chr11:114273637 5'GT 114273637 Upstream 69bp
chr11 114273569 114273569 1 + A G OV 114273563 + 114273543 114273583 41 ATTTTAGGAAGTAGTCATGCCCCACAAGATGTCAGTTTGTC ATTTTAGGAAGTAGTCATGCCCCACAGGATGTCAGTTTGTC < 41bp 1 0.152360007219641 1 0.186032772064209 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273563 chr11:114273569 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_30732 0 0 1 0 3 RBM7 chr11:114273550 3'AG 114273550 Downstream 20bp
chr11 114273569 114273569 1 + A G OV 114273563 + 114273543 114273583 41 ATTTTAGGAAGTAGTCATGCCCCACAAGATGTCAGTTTGTC ATTTTAGGAAGTAGTCATGCCCCACAGGATGTCAGTTTGTC < 41bp 1 0.152360007219641 1 0.186032772064209 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273563 chr11:114273569 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_30732 0 0 1 0 3 RBM7 chr11:114273554 3'AG 114273554 Downstream 16bp
chr11 114273569 114273569 1 + A G OV 114273563 + 114273543 114273583 41 ATTTTAGGAAGTAGTCATGCCCCACAAGATGTCAGTTTGTC ATTTTAGGAAGTAGTCATGCCCCACAGGATGTCAGTTTGTC < 41bp 1 0.152360007219641 1 0.186032772064209 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273563 chr11:114273569 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_30732 0 0 1 0 3 RBM7 chr11:114273637 5'GT 114273637 Upstream 69bp
chr11 114273569 114273569 1 + A G OV 114273583 + 114273563 114273603 41 CCCACAAGATGTCAGTTTGTCATATCCCCAACATCATGTTG CCCACAGGATGTCAGTTTGTCATATCCCCAACATCATGTTG < 41bp 1 0.291967356032003 1 0.0837568342685699 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273583 chr11:114273569 nonsynonymous SNV . 0 7 hm5C_associated_SNPs_30733 0 0 1 0 3 RBM7 chr11:114273550 3'AG 114273550 Downstream 20bp
chr11 114273569 114273569 1 + A G OV 114273583 + 114273563 114273603 41 CCCACAAGATGTCAGTTTGTCATATCCCCAACATCATGTTG CCCACAGGATGTCAGTTTGTCATATCCCCAACATCATGTTG < 41bp 1 0.291967356032003 1 0.0837568342685699 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273583 chr11:114273569 nonsynonymous SNV . 0 7 hm5C_associated_SNPs_30733 0 0 1 0 3 RBM7 chr11:114273554 3'AG 114273554 Downstream 16bp
chr11 114273569 114273569 1 + A G OV 114273583 + 114273563 114273603 41 CCCACAAGATGTCAGTTTGTCATATCCCCAACATCATGTTG CCCACAGGATGTCAGTTTGTCATATCCCCAACATCATGTTG < 41bp 1 0.291967356032003 1 0.0837568342685699 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273583 chr11:114273569 nonsynonymous SNV . 0 7 hm5C_associated_SNPs_30733 0 0 1 0 3 RBM7 chr11:114273637 5'GT 114273637 Upstream 69bp
chr11 114273569 114273569 1 + A G OV 114273589 + 114273569 114273609 41 AGATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATT GGATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATT < 41bp 1 0.658442150924656 1 0.0648296177387238 experiment 0.683115698150687 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273589 chr11:114273569 nonsynonymous SNV . 0 1 hm5C_associated_SNPs_30734 0 0 1 0 3 RBM7 chr11:114273550 3'AG 114273550 Downstream 20bp
chr11 114273569 114273569 1 + A G OV 114273589 + 114273569 114273609 41 AGATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATT GGATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATT < 41bp 1 0.658442150924656 1 0.0648296177387238 experiment 0.683115698150687 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273589 chr11:114273569 nonsynonymous SNV . 0 1 hm5C_associated_SNPs_30734 0 0 1 0 3 RBM7 chr11:114273554 3'AG 114273554 Downstream 16bp
chr11 114273569 114273569 1 + A G OV 114273589 + 114273569 114273609 41 AGATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATT GGATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATT < 41bp 1 0.658442150924656 1 0.0648296177387238 experiment 0.683115698150687 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273589 chr11:114273569 nonsynonymous SNV . 0 1 hm5C_associated_SNPs_30734 0 0 1 0 3 RBM7 chr11:114273637 5'GT 114273637 Upstream 69bp
chr12 56532006 56532006 1 + T A OV 56531999 + 56531979 56532019 41 GAGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCG GAGGATGTCCCATCTGGCCGCCTGCACATGCGCCTGGAGCG < 41bp 1 0.0548136643565562 1 0.496185600757599 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56531999 chr12:56532006 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_30735 0 0 1 0 2 ESYT1 chr12:56531967 3'AG 56531967 Downstream 40bp
chr12 56532006 56532006 1 + T A OV 56531999 + 56531979 56532019 41 GAGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCG GAGGATGTCCCATCTGGCCGCCTGCACATGCGCCTGGAGCG < 41bp 1 0.0548136643565562 1 0.496185600757599 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56531999 chr12:56532006 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_30735 0 0 1 0 2 ESYT1 chr12:56532056 5'GT 56532056 Upstream 51bp
chr12 56532006 56532006 1 + T A OV 56532000 + 56531980 56532020 41 AGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCGT AGGATGTCCCATCTGGCCGCCTGCACATGCGCCTGGAGCGT < 41bp 1 0.503814301090347 1 0.611242890357971 experiment 0.992371397819305 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532000 chr12:56532006 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_30736 0 0 1 0 2 ESYT1 chr12:56531967 3'AG 56531967 Downstream 40bp
chr12 56532006 56532006 1 + T A OV 56532000 + 56531980 56532020 41 AGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCGT AGGATGTCCCATCTGGCCGCCTGCACATGCGCCTGGAGCGT < 41bp 1 0.503814301090347 1 0.611242890357971 experiment 0.992371397819305 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532000 chr12:56532006 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_30736 0 0 1 0 2 ESYT1 chr12:56532056 5'GT 56532056 Upstream 51bp
chr19 39964938 39964938 1 + C T OV 39964940 + 39964920 39964960 41 GGTTCCTACCAGCCCAGCCCCAGCCCCCAGAGCTACCACCA GGTTCCTACCAGCCCAGCTCCAGCCCCCAGAGCTACCACCA < 41bp 1 0.366995698708515 1 0.672664642333984 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39964940 chr19:39964938 nonsynonymous SNV 1.000 3 19 hm5C_associated_SNPs_30737 0 0 1 0 1 SUPT5H chr19:39964874 3'AG 39964874 Downstream 65bp
chr19 39964932 39964932 1 + C G OV 39964940 + 39964920 39964960 41 GGTTCCTACCAGCCCAGCCCCAGCCCCCAGAGCTACCACCA GGTTCCTACCAGGCCAGCCCCAGCCCCCAGAGCTACCACCA < 41bp 1 0.425574765452411 1 0.720483779907227 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39964940 chr19:39964932 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_30738 0 0 1 0 1 SUPT5H chr19:39964874 3'AG 39964874 Downstream 59bp
chr12 62931434 62931434 1 + G A OV 62931443 + 62931423 62931463 41 CTTGGCGCATTGCCATGGGGCTGTTCTTGGAACATCATGGC CTTGGCGCATTACCATGGGGCTGTTCTTGGAACATCATGGC < 41bp 1 0.115521535115751 1 0.0545776784420013 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62931443 chr12:62931434 nonsynonymous SNV 0.978 4 12 hm5C_associated_SNPs_30739 0 0 1 0 2 MON2 chr12:62931382 3'AG 62931382 Downstream 53bp
chr12 62931434 62931434 1 + G A OV 62931443 + 62931423 62931463 41 CTTGGCGCATTGCCATGGGGCTGTTCTTGGAACATCATGGC CTTGGCGCATTACCATGGGGCTGTTCTTGGAACATCATGGC < 41bp 1 0.115521535115751 1 0.0545776784420013 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62931443 chr12:62931434 nonsynonymous SNV 0.978 4 12 hm5C_associated_SNPs_30739 0 0 1 0 2 MON2 chr12:62931486 5'GT 62931486 Upstream 53bp
chr7 102944373 102944373 1 + A T OV 102944354 + 102944334 102944374 41 AAGCAGAGATTGAACGTGAGCGTGGAGTAATCCTTAGAGAG AAGCAGAGATTGAACGTGAGCGTGGAGTAATCCTTAGAGTG < 41bp 1 0.601929328025135 1 0.501772940158844 experiment 0.79614134394973 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PMPCB ENSG00000105819 CDS Human protein_coding chr7:102944354 chr7:102944373 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_30740 0 0 1 0 1 PMPCB chr7:102944289 3'AG 102944289 Downstream 85bp
chr3 31674583 31674583 1 + G C OV 31674578 + 31674558 31674598 41 AGCACCTGATAACAGGGAGACATTAGATCACAAACCTCGAG AGCACCTGATAACAGGGAGACATTACATCACAAACCTCGAG < 41bp 1 0.14284062864636 1 0.223733454942703 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STT3B ENSG00000163527 CDS Human protein_coding chr3:31674578 chr3:31674583 nonsynonymous SNV 0.997 2 26 hm5C_associated_SNPs_30741 0 0 1 0 1 STT3B chr3:31674639 5'GT 31674639 Upstream 57bp
chr5 142434073 142434073 1 + C T OV 142434062 + 142434042 142434082 41 GCTGAATGGGAGATAAAGACCATCACTAGTGCTCTGAAGAC GCTGAATGGGAGATAAAGACCATCACTAGTGTTCTGAAGAC < 41bp 1 0.343027809712071 1 0.0974161028862 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142434062 chr5:142434073 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_30742 0 0 1 0 2 ARHGAP26 chr5:142434004 3'AG 142434004 Downstream 70bp
chr5 142434073 142434073 1 + C T OV 142434062 + 142434042 142434082 41 GCTGAATGGGAGATAAAGACCATCACTAGTGCTCTGAAGAC GCTGAATGGGAGATAAAGACCATCACTAGTGTTCTGAAGAC < 41bp 1 0.343027809712071 1 0.0974161028862 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142434062 chr5:142434073 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_30742 0 0 1 0 2 ARHGAP26 chr5:142434091 5'GT 142434091 Upstream 19bp
chr19 47876045 47876045 1 + A T OV 47876028 + 47876008 47876048 41 CCATGTTCAGCCTGGTGGAGCCTGTGCTCACCATCGCAGCC CCATGTTCAGCCTGGTGGAGCCTGTGCTCACCATCGCTGCC < 41bp 1 0.0790722887954718 1 0.0816695988178253 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHX34 ENSG00000134815 CDS Human protein_coding chr19:47876028 chr19:47876045 synonymous SNV . 0 38 hm5C_associated_SNPs_30743 0 0 1 0 1 DHX34 chr19:47875987 3'AG 47875987 Downstream 59bp
chrX 103434385 103434385 1 + T C OV 103434382 + 103434362 103434402 41 GGAAGGAGAGGCTCAGTGGGCTCTTCCTTAACGAAGAGGTG GGAAGGAGAGGCTCAGTGGGCTCCTCCTTAACGAAGAGGTG < 41bp 1 0.47618171450939 1 0.126292496919632 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAM199X ENSG00000123575 CDS Human protein_coding chrX:103434382 chrX:103434385 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_30744 0 0 1 0 1 FAM199X chrX:103434289 3'AG 103434289 Downstream 97bp
chr5 139887569 139887569 1 + G C OV 139887579 + 139887559 139887599 41 AGCCAATGTTGAACATAGGGCAAAGGTAAGCATTTTTTACT AGCCAATGTTCAACATAGGGCAAAGGTAAGCATTTTTTACT < 41bp 1 0.145675766339028 1 0.16583040356636 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139887579 chr5:139887569 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_30745 0 0 1 0 1 ANKHD1;ANKHD1-EIF4EBP3 chr5:139887583 5'GT 139887583 Upstream 15bp
chr16 19184801 19184801 1 + G T OV 19184812 + 19184792 19184832 41 GGACCTGCCGGCACTGCTGTCAGAAGTGCTACGAGTCCAGC GGACCTGCCTGCACTGCTGTCAGAAGTGCTACGAGTCCAGC < 41bp 1 0.790062476936995 1 0.868907451629639 experiment 0.419875046126009 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYT17 ENSG00000103528 CDS Human protein_coding chr16:19184812 chr16:19184801 nonsynonymous SNV 0.978 1 10 hm5C_associated_SNPs_30746 0 0 0 0 2 SYT17 chr16:19184752 3'AG 19184752 Downstream 50bp
chr16 19184801 19184801 1 + G T OV 19184812 + 19184792 19184832 41 GGACCTGCCGGCACTGCTGTCAGAAGTGCTACGAGTCCAGC GGACCTGCCTGCACTGCTGTCAGAAGTGCTACGAGTCCAGC < 41bp 1 0.790062476936995 1 0.868907451629639 experiment 0.419875046126009 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYT17 ENSG00000103528 CDS Human protein_coding chr16:19184812 chr16:19184801 nonsynonymous SNV 0.978 1 10 hm5C_associated_SNPs_30746 0 0 0 0 2 SYT17 chr16:19184900 5'GT 19184900 Upstream 100bp
chr15 57545612 57545612 1 + C A OV 57545632 + 57545612 57545652 41 CAATTCAAACTATGGAGGATCAAGCCTTGTTGCAAGCAGTC AAATTCAAACTATGGAGGATCAAGCCTTGTTGCAAGCAGTC < 41bp 1 0.225204763562431 1 0.404215723276138 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57545632 chr15:57545612 synonymous SNV . 0 1 hm5C_associated_SNPs_30747 0 0 1 0 1 TCF12 chr15:57545666 5'GT 57545666 Upstream 55bp
chr1 53420448 53420448 1 + A T OV 53420465 + 53420445 53420485 41 AGAAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT AGATGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT < 41bp 1 0.38992333486534 1 0.162339180707932 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53420465 chr1:53420448 nonsynonymous SNV 0.998 5 4 hm5C_associated_SNPs_30751 0 0 1 0 2 SCP2 chr1:53420412 3'AG 53420412 Downstream 37bp
chr1 53420448 53420448 1 + A T OV 53420465 + 53420445 53420485 41 AGAAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT AGATGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT < 41bp 1 0.38992333486534 1 0.162339180707932 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53420465 chr1:53420448 nonsynonymous SNV 0.998 5 4 hm5C_associated_SNPs_30751 0 0 1 0 2 SCP2 chr1:53420476 5'GT 53420476 Upstream 29bp
chr5 137518372 137518372 1 + G A OV 137518361 + 137518341 137518381 41 AACTTCATCCAACACCTGATCTGAAGCCCTTGCTCTCCAAT AACTTCATCCAACACCTGATCTGAAGCCCTTACTCTCCAAT < 41bp 1 0.688205528246012 1 0.243791610002518 experiment 0.623588943507976 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF20A ENSG00000112984 CDS Human protein_coding chr5:137518361 chr5:137518372 synonymous SNV . 0 32 hm5C_associated_SNPs_30752 0 0 1 0 2 KIF20A chr5:137518275 3'AG 137518275 Downstream 98bp
chr5 137518372 137518372 1 + G A OV 137518361 + 137518341 137518381 41 AACTTCATCCAACACCTGATCTGAAGCCCTTGCTCTCCAAT AACTTCATCCAACACCTGATCTGAAGCCCTTACTCTCCAAT < 41bp 1 0.688205528246012 1 0.243791610002518 experiment 0.623588943507976 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF20A ENSG00000112984 CDS Human protein_coding chr5:137518361 chr5:137518372 synonymous SNV . 0 32 hm5C_associated_SNPs_30752 0 0 1 0 2 KIF20A chr5:137518462 5'GT 137518462 Upstream 91bp
chr20 49195803 49195803 1 + G A OV 49195806 + 49195786 49195826 41 CAGACAGCCGACCAGCTGCGCTTCTCCTACCTGGCTGTGAT CAGACAGCCGACCAGCTACGCTTCTCCTACCTGGCTGTGAT < 41bp 1 0.136933580537789 1 0.0317008197307587 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49195806 chr20:49195803 synonymous SNV . 0 18 hm5C_associated_SNPs_30754 0 0 1 0 2 PTPN1 chr20:49195705 3'AG 49195705 Downstream 99bp
chr20 49195803 49195803 1 + G A OV 49195806 + 49195786 49195826 41 CAGACAGCCGACCAGCTGCGCTTCTCCTACCTGGCTGTGAT CAGACAGCCGACCAGCTACGCTTCTCCTACCTGGCTGTGAT < 41bp 1 0.136933580537789 1 0.0317008197307587 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49195806 chr20:49195803 synonymous SNV . 0 18 hm5C_associated_SNPs_30754 0 0 1 0 2 PTPN1 chr20:49195866 5'GT 49195866 Upstream 64bp
chr6 31928242 31928242 1 + A G OV 31928230 + 31928210 31928250 41 TCTTGCTGGAGAACACAAATCTCTCGGCTACAACCTCCTTG TCTTGCTGGAGAACACAAATCTCTCGGCTACAGCCTCCTTG < 41bp 1 0.367247886687597 1 0.0320837199687958 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31928230 chr6:31928242 nonsynonymous SNV 0.864 2 33 hm5C_associated_SNPs_30755 0 0 1 0 2 SKIV2L chr6:31928209 3'AG 31928209 Downstream 34bp
chr6 31928242 31928242 1 + A G OV 31928230 + 31928210 31928250 41 TCTTGCTGGAGAACACAAATCTCTCGGCTACAACCTCCTTG TCTTGCTGGAGAACACAAATCTCTCGGCTACAGCCTCCTTG < 41bp 1 0.367247886687597 1 0.0320837199687958 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31928230 chr6:31928242 nonsynonymous SNV 0.864 2 33 hm5C_associated_SNPs_30755 0 0 1 0 2 SKIV2L chr6:31928323 5'GT 31928323 Upstream 82bp
chr1 150483652 150483652 1 + G T OV 150483635 + 150483615 150483655 41 TATTCCCGCTGCTGCCACTGCCGCAGCCACACAAACCGCCT TATTCCCGCTGCTGCCACTGCCGCAGCCACACAAACCTCCT < 41bp 1 0.604396572075465 1 0.749216675758362 experiment 0.791206855849069 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ECM1 ENSG00000143369 CDS Human protein_coding chr1:150483635 chr1:150483652 nonsynonymous SNV 0.856 2 38 hm5C_associated_SNPs_30756 0 0 0 0 1 ECM1 chr1:150483674 5'GT 150483674 Upstream 23bp
chr7 6634132 6634132 1 + C T OV 6634139 + 6634119 6634159 41 CTGCTGTTTGGTGCCGGGATCCATTCAGACGCTGAAGCAGA CTGCTGTTTGGTGTCGGGATCCATTCAGACGCTGAAGCAGA < 41bp 1 0.0415904786052418 1 0.18979811668396 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6634139 chr7:6634132 nonsynonymous SNV 0.997 3 14 hm5C_associated_SNPs_30762 0 0 1 0 2 C7orf26 chr7:6634066 3'AG 6634066 Downstream 67bp
chr7 6634132 6634132 1 + C T OV 6634139 + 6634119 6634159 41 CTGCTGTTTGGTGCCGGGATCCATTCAGACGCTGAAGCAGA CTGCTGTTTGGTGTCGGGATCCATTCAGACGCTGAAGCAGA < 41bp 1 0.0415904786052418 1 0.18979811668396 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6634139 chr7:6634132 nonsynonymous SNV 0.997 3 14 hm5C_associated_SNPs_30762 0 0 1 0 2 C7orf26 chr7:6634231 5'GT 6634231 Upstream 100bp
chr7 133682256 133682256 1 + G A OV 133682272 + 133682252 133682292 41 TCCTGCTCAAGACAGCCACACGAACACGGATCTCCCCCCAG TCCTACTCAAGACAGCCACACGAACACGGATCTCCCCCCAG < 41bp 1 0.206507810678988 1 0.117963463068008 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133682272 chr7:133682256 nonsynonymous SNV 0.941 1 5 hm5C_associated_SNPs_30770 0 0 1 0 1 EXOC4 chr7:133682245 3'AG 133682245 Downstream 12bp
chr7 133682256 133682256 1 + G A OV 133682276 + 133682256 133682296 41 GCTCAAGACAGCCACACGAACACGGATCTCCCCCCAGTGTC ACTCAAGACAGCCACACGAACACGGATCTCCCCCCAGTGTC < 41bp 1 0.745188023359035 1 0.557802677154541 experiment 0.509623953281931 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133682276 chr7:133682256 nonsynonymous SNV 0.941 1 1 hm5C_associated_SNPs_30771 0 0 1 0 1 EXOC4 chr7:133682245 3'AG 133682245 Downstream 12bp
chr6 110501769 110501769 1 + C A OV 110501749 + 110501729 110501769 41 CGGTGTCCGCTGCCAGCCGCCGACTCCCTCATGCACTTGAC CGGTGTCCGCTGCCAGCCGCCGACTCCCTCATGCACTTGAA < 41bp 1 0.467141657955436 1 0.557451546192169 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC40 ENSG00000168438 CDS Human protein_coding chr6:110501749 chr6:110501769 nonsynonymous SNV 0.967 1 41 hm5C_associated_SNPs_30772 0 0 1 0 1 CDC40 chr6:110501836 5'GT 110501836 Upstream 68bp
chr14 21963388 21963388 1 + G A OV 21963397 + 21963377 21963417 41 TCTTCTCACAGGTTGAGTCTCCTTCTCAGATGGATGTTGAA TCTTCTCACAGATTGAGTCTCCTTCTCAGATGGATGTTGAA < 41bp 1 0.0160626575003287 1 0.0700528621673584 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOX4 ENSG00000092203 CDS Human protein_coding chr14:21963397 chr14:21963388 nonsynonymous SNV 0.936 0 12 hm5C_associated_SNPs_30774 0 0 1 0 1 TOX4 chr14:21963388 3'AG 21963388 Downstream 1bp
chr14 21963388 21963388 1 + G A OV 21963398 + 21963378 21963418 41 CTTCTCACAGGTTGAGTCTCCTTCTCAGATGGATGTTGAAT CTTCTCACAGATTGAGTCTCCTTCTCAGATGGATGTTGAAT < 41bp 1 0.0797059110161117 1 0.0459150969982147 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOX4 ENSG00000092203 CDS Human protein_coding chr14:21963398 chr14:21963388 nonsynonymous SNV 0.936 0 11 hm5C_associated_SNPs_30775 0 0 1 0 1 TOX4 chr14:21963388 3'AG 21963388 Downstream 1bp
chr17 30774043 30774043 1 + G A OV 30774035 + 30774015 30774055 41 GAGCATCCTGGAACTGGGATCTCTCCTGGCAAAGACTGGAC GAGCATCCTGGAACTGGGATCTCTCCTGACAAAGACTGGAC < 41bp 1 0.221703645446455 1 0.357843279838562 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30774035 chr17:30774043 nonsynonymous SNV 0.994 1 29 hm5C_associated_SNPs_30776 0 0 1 0 2 PSMD11 chr17:30773963 3'AG 30773963 Downstream 81bp
chr17 30774043 30774043 1 + G A OV 30774035 + 30774015 30774055 41 GAGCATCCTGGAACTGGGATCTCTCCTGGCAAAGACTGGAC GAGCATCCTGGAACTGGGATCTCTCCTGACAAAGACTGGAC < 41bp 1 0.221703645446455 1 0.357843279838562 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30774035 chr17:30774043 nonsynonymous SNV 0.994 1 29 hm5C_associated_SNPs_30776 0 0 1 0 2 PSMD11 chr17:30774064 5'GT 30774064 Upstream 22bp
chr20 2732414 2732414 1 + G A OV 2732405 + 2732385 2732425 41 TACAGAAAGTCATTCCCAGACACCCCGGAGACCCCGAGAGG TACAGAAAGTCATTCCCAGACACCCCGGAAACCCCGAGAGG < 41bp 1 0.221689079971655 1 0.0965028405189514 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EBF4 ENSG00000088881 CDS Human protein_coding chr20:2732405 chr20:2732414 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_30777 0 0 0 0 2 EBF4 chr20:2732346 3'AG 2732346 Downstream 69bp
chr20 2732414 2732414 1 + G A OV 2732405 + 2732385 2732425 41 TACAGAAAGTCATTCCCAGACACCCCGGAGACCCCGAGAGG TACAGAAAGTCATTCCCAGACACCCCGGAAACCCCGAGAGG < 41bp 1 0.221689079971655 1 0.0965028405189514 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EBF4 ENSG00000088881 CDS Human protein_coding chr20:2732405 chr20:2732414 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_30777 0 0 0 0 2 EBF4 chr20:2732434 5'GT 2732434 Upstream 21bp
chr3 52245377 52245377 1 + G T OV 52245357 + 52245337 52245377 41 ACGAGTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGG ACGAGTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGT < 41bp 1 0.139175985959895 1 0.292942702770233 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245357 chr3:52245377 nonsynonymous SNV 0.896 5 41 hm5C_associated_SNPs_30778 0 0 1 0 1 ALAS1 chr3:52245299 3'AG 52245299 Downstream 79bp
chr3 52245377 52245377 1 + G T OV 52245361 + 52245341 52245381 41 GTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGGCTTC GTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGTCTTC < 41bp 1 0.282711791993017 1 0.267013669013977 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245361 chr3:52245377 nonsynonymous SNV 0.896 5 37 hm5C_associated_SNPs_30779 0 0 1 0 1 ALAS1 chr3:52245299 3'AG 52245299 Downstream 79bp
chr2 71901350 71901350 1 + G A OV 71901331 + 71901311 71901351 41 TCCTCTTCCGGGTCAGGATGCCTTCTGGAGGCTGGACAAGA TCCTCTTCCGGGTCAGGATGCCTTCTGGAGGCTGGACAAAA < 41bp 1 0.0233603353340228 1 0.054459422826767 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71901331 chr2:71901350 synonymous SNV . 0 40 hm5C_associated_SNPs_30780 0 0 0 0 2 DYSF chr2:71901327 3'AG 71901327 Downstream 24bp
chr2 71901350 71901350 1 + G A OV 71901331 + 71901311 71901351 41 TCCTCTTCCGGGTCAGGATGCCTTCTGGAGGCTGGACAAGA TCCTCTTCCGGGTCAGGATGCCTTCTGGAGGCTGGACAAAA < 41bp 1 0.0233603353340228 1 0.054459422826767 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71901331 chr2:71901350 synonymous SNV . 0 40 hm5C_associated_SNPs_30780 0 0 0 0 2 DYSF chr2:71901426 5'GT 71901426 Upstream 77bp
chr1 12061849 12061849 1 + C T OV 12061838 + 12061818 12061858 41 CCTCCTAGGGGGCGCTCTCGCAGAAGGCTTTCAAGTGAGGA CCTCCTAGGGGGCGCTCTCGCAGAAGGCTTTTAAGTGAGGA < 41bp 1 0.795396837442602 1 0.763458132743835 experiment 0.409206325114796 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061838 chr1:12061849 stopgain 1.000 1 32 hm5C_associated_SNPs_30787 0 0 1 0 2 MFN2 chr1:12061826 3'AG 12061826 Downstream 24bp
chr1 12061849 12061849 1 + C T OV 12061838 + 12061818 12061858 41 CCTCCTAGGGGGCGCTCTCGCAGAAGGCTTTCAAGTGAGGA CCTCCTAGGGGGCGCTCTCGCAGAAGGCTTTTAAGTGAGGA < 41bp 1 0.795396837442602 1 0.763458132743835 experiment 0.409206325114796 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061838 chr1:12061849 stopgain 1.000 1 32 hm5C_associated_SNPs_30787 0 0 1 0 2 MFN2 chr1:12061893 5'GT 12061893 Upstream 45bp
chr15 93528746 93528746 1 + G A OV 93528742 + 93528722 93528762 41 TCTCAGGCTCAGACAAATGACAGTGACTCTGACACTGAGTC TCTCAGGCTCAGACAAATGACAGTAACTCTGACACTGAGTC < 41bp 1 0.343599340785386 1 0.0797841250896454 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93528742 chr15:93528746 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_30790 0 0 1 0 1 CHD2 chr15:93528728 3'AG 93528728 Downstream 19bp
chr7 43590137 43590137 1 + G A OV 43590119 + 43590099 43590139 41 ACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGCGGGTG ACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGCGGATG < 41bp 1 0.267161167830782 1 0.09238600730896 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43590119 chr7:43590137 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_30791 0 0 0 0 2 HECW1 chr7:43590044 3'AG 43590044 Downstream 94bp
chr7 43590137 43590137 1 + G A OV 43590119 + 43590099 43590139 41 ACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGCGGGTG ACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGCGGATG < 41bp 1 0.267161167830782 1 0.09238600730896 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43590119 chr7:43590137 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_30791 0 0 0 0 2 HECW1 chr7:43590190 5'GT 43590190 Upstream 54bp
chr11 25004828 25004828 1 + G A OV 25004826 + 25004806 25004846 41 CTCTAAGCTTCCAGATGCAGCGGCCAAAAGCAAGGTACCTA CTCTAAGCTTCCAGATGCAGCGACCAAAAGCAAGGTACCTA < 41bp 1 0.20599847775818 1 0.247186273336411 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LUZP2 ENSG00000187398 CDS Human protein_coding chr11:25004826 chr11:25004828 nonsynonymous SNV 0.010 0 23 hm5C_associated_SNPs_30792 0 0 0 0 1 LUZP2 chr11:25004839 5'GT 25004839 Upstream 12bp
chr12 57604651 57604651 1 + G A OV 57604652 + 57604632 57604672 41 CCCGGCTTCCTGGGCGACCGCTGCCAGTACCGTGAGTGAGC CCCGGCTTCCTGGGCGACCACTGCCAGTACCGTGAGTGAGC < 41bp 1 0.196694879715126 1 0.13219365477562 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57604652 chr12:57604651 nonsynonymous SNV 0.994 1 20 hm5C_associated_SNPs_30793 0 0 1 0 1 LRP1 chr12:57604662 5'GT 57604662 Upstream 12bp
chr12 57604643 57604643 1 + G A OV 57604652 + 57604632 57604672 41 CCCGGCTTCCTGGGCGACCGCTGCCAGTACCGTGAGTGAGC CCCGGCTTCCTAGGCGACCGCTGCCAGTACCGTGAGTGAGC < 41bp 1 0.140709425598204 1 0.226545482873917 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57604652 chr12:57604643 synonymous SNV . 0 12 hm5C_associated_SNPs_30794 0 0 1 0 1 LRP1 chr12:57604662 5'GT 57604662 Upstream 20bp
chr15 22969246 22969246 1 + G A OV 22969231 + 22969211 22969251 41 AGCCGGTACCTGACGCTGGACGGCTTCGACGCCATGTTCCG AGCCGGTACCTGACGCTGGACGGCTTCGACGCCATATTCCG < 41bp 1 0.469406343667259 1 0.122115910053253 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22969231 chr15:22969246 nonsynonymous SNV . 0 36 hm5C_associated_SNPs_30795 0 0 1 0 1 CYFIP1 chr15:22969163 3'AG 22969163 Downstream 84bp
chr19 7682693 7682693 1 + G T OV 7682691 + 7682671 7682711 41 ATCCTCTTTCGCGACTCGAGCTGCCAGTTCCGGGCGCTCTA ATCCTCTTTCGCGACTCGAGCTTCCAGTTCCGGGCGCTCTA < 41bp 1 0.0750305769679721 1 0.0356321632862091 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7682691 chr19:7682693 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_30798 0 0 0 0 1 CAMSAP3 chr19:7682638 3'AG 7682638 Downstream 56bp
chr13 97928622 97928622 1 + G A OV 97928608 + 97928588 97928628 41 ATGCAAATTTGCTCATCCCCCCAAAAGTTGTCAGGTTGAAA ATGCAAATTTGCTCATCCCCCCAAAAGTTGTCAGATTGAAA < 41bp 1 0.192963209874613 1 0.278047382831573 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MBNL2 ENSG00000139793 CDS Human protein_coding chr13:97928608 chr13:97928622 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_30800 0 0 1 0 1 MBNL2 chr13:97928663 5'GT 97928663 Upstream 42bp
chr19 50753045 50753045 1 + G T OV 50753062 + 50753042 50753082 41 CTCGACCTGCAGCCCTGCATCGACCTCATCGAGCGGCCGGT CTCTACCTGCAGCCCTGCATCGACCTCATCGAGCGGCCGGT < 41bp 1 0.22164170507511 1 0.7178675532341 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50753062 chr19:50753045 nonsynonymous SNV 0.662 3 4 hm5C_associated_SNPs_30801 0 0 0 0 1 MYH14 chr19:50753080 5'GT 50753080 Upstream 36bp
chr9 117063983 117063983 1 + C T OV 117063993 + 117063973 117064013 41 CCCCAGAGGGCGGCCCGGCCCCCCGGTAGGTAACTGAGTGC CCCCAGAGGGTGGCCCGGCCCCCCGGTAGGTAACTGAGTGC < 41bp 1 0.410021738323252 1 0.390791445970535 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117063993 chr9:117063983 nonsynonymous SNV 0.171 3 11 hm5C_associated_SNPs_30802 0 0 1 0 1 COL27A1 chr9:117063997 5'GT 117063997 Upstream 15bp
chr2 64114635 64114635 1 + C A OV 64114634 + 64114614 64114654 41 GGTATTAATGTGCCAAGGAGCCGTTTTCTGCCTGTCAAAAC GGTATTAATGTGCCAAGGAGCAGTTTTCTGCCTGTCAAAAC < 41bp 1 0.416228847197944 1 0.170024275779724 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UGP2 ENSG00000169764 CDS Human protein_coding chr2:64114634 chr2:64114635 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_30803 0 0 1 0 1 UGP2 chr2:64114536 3'AG 64114536 Downstream 100bp
chr22 26400709 26400709 1 + C A OV 26400695 + 26400675 26400715 41 TTATTCTAGGGATAACGTCTCCATCCTCAGCTCCCAGCCAG TTATTCTAGGGATAACGTCTCCATCCTCAGCTCCAAGCCAG < 41bp 1 0.0239983444311091 1 0.378598928451538 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26400695 chr22:26400709 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_30804 0 0 0 0 1 MYO18B chr22:26400684 3'AG 26400684 Downstream 26bp
chr1 44083209 44083209 1 + C T OV 44083229 + 44083209 44083249 41 CACTCTCGAGTCATCCTTACCTCTATCGATGGTGAGCCAAG TACTCTCGAGTCATCCTTACCTCTATCGATGGTGAGCCAAG < 41bp 1 0.373865648198347 1 0.804999351501465 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44083229 chr1:44083209 nonsynonymous SNV 0.998 3 1 hm5C_associated_SNPs_30805 0 0 0 0 2 PTPRF chr1:44083116 3'AG 44083116 Downstream 94bp
chr1 44083209 44083209 1 + C T OV 44083229 + 44083209 44083249 41 CACTCTCGAGTCATCCTTACCTCTATCGATGGTGAGCCAAG TACTCTCGAGTCATCCTTACCTCTATCGATGGTGAGCCAAG < 41bp 1 0.373865648198347 1 0.804999351501465 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44083229 chr1:44083209 nonsynonymous SNV 0.998 3 1 hm5C_associated_SNPs_30805 0 0 0 0 2 PTPRF chr1:44083239 5'GT 44083239 Upstream 31bp
chr22 26291146 26291146 1 + G A OV 26291140 + 26291120 26291160 41 CAGCAGACGAGTGGCAGATGCGCTTCGACTGTGCTCAGATG CAGCAGACGAGTGGCAGATGCGCTTCAACTGTGCTCAGATG < 41bp 1 0.0936772570478851 1 0.366064548492432 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26291140 chr22:26291146 nonsynonymous SNV 0.851 3 27 hm5C_associated_SNPs_30806 0 0 1 0 2 MYO18B chr22:26291123 3'AG 26291123 Downstream 24bp
chr22 26291146 26291146 1 + G A OV 26291140 + 26291120 26291160 41 CAGCAGACGAGTGGCAGATGCGCTTCGACTGTGCTCAGATG CAGCAGACGAGTGGCAGATGCGCTTCAACTGTGCTCAGATG < 41bp 1 0.0936772570478851 1 0.366064548492432 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26291140 chr22:26291146 nonsynonymous SNV 0.851 3 27 hm5C_associated_SNPs_30806 0 0 1 0 2 MYO18B chr22:26291126 3'AG 26291126 Downstream 21bp
chr19 10571778 10571778 1 + C A OV 10571761 + 10571741 10571781 41 ATCACCCTGGGGTCTCCAACCAGTTCCTCATCAACACCAGT ATCACCCTGGGGTCTCCAACCAGTTCCTCATCAACACAAGT < 41bp 1 0.116984060884381 1 0.510739147663116 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10571761 chr19:10571778 nonsynonymous SNV . 0 38 hm5C_associated_SNPs_30807 0 0 0 0 2 PDE4A chr19:10571680 3'AG 10571680 Downstream 99bp
chr19 10571778 10571778 1 + C A OV 10571761 + 10571741 10571781 41 ATCACCCTGGGGTCTCCAACCAGTTCCTCATCAACACCAGT ATCACCCTGGGGTCTCCAACCAGTTCCTCATCAACACAAGT < 41bp 1 0.116984060884381 1 0.510739147663116 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10571761 chr19:10571778 nonsynonymous SNV . 0 38 hm5C_associated_SNPs_30807 0 0 0 0 2 PDE4A chr19:10571779 5'GT 10571779 Upstream 2bp
chr6 160212129 160212129 1 + G C OV 160212137 + 160212117 160212157 41 GGGCTGGCGGACGGTGTTTCCCTCCCGTGAGTTCTGGCACA GGGCTGGCGGACCGTGTTTCCCTCCCGTGAGTTCTGGCACA < 41bp 1 0.209287441302669 1 0.200336426496506 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160212137 chr6:160212129 synonymous SNV . 0 13 hm5C_associated_SNPs_30809 0 0 1 0 1 MRPL18 chr6:160212158 5'GT 160212158 Upstream 30bp
chr10 12199963 12199963 1 + C G OV 12199960 + 12199940 12199980 41 CGTTACCGAGGACAGTACAGCAGCTACCCCATCAAACTCTT CGTTACCGAGGACAGTACAGCAGGTACCCCATCAAACTCTT < 41bp 1 0.615494730070314 1 0.629425227642059 experiment 0.769010539859373 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12199960 chr10:12199963 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_30810 0 0 1 0 1 SEC61A2 chr10:12199907 3'AG 12199907 Downstream 57bp
chr8 36692358 36692358 1 + C A OV 36692357 + 36692337 36692377 41 AATCCTTTGTGCAGTGATTCCCATGCTGAAGATATTTCCAA AATCCTTTGTGCAGTGATTCCAATGCTGAAGATATTTCCAA < 41bp 1 0.340836956912034 1 0.651835322380066 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36692357 chr8:36692358 nonsynonymous SNV 0.029 0 22 hm5C_associated_SNPs_30811 0 0 0 0 2 KCNU1 chr8:36692304 3'AG 36692304 Downstream 55bp
chr8 36692358 36692358 1 + C A OV 36692357 + 36692337 36692377 41 AATCCTTTGTGCAGTGATTCCCATGCTGAAGATATTTCCAA AATCCTTTGTGCAGTGATTCCAATGCTGAAGATATTTCCAA < 41bp 1 0.340836956912034 1 0.651835322380066 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36692357 chr8:36692358 nonsynonymous SNV 0.029 0 22 hm5C_associated_SNPs_30811 0 0 0 0 2 KCNU1 chr8:36692386 5'GT 36692386 Upstream 29bp
chr2 169622187 169622187 1 + G T OV 169622178 + 169622158 169622198 41 GGTGGGTTTTTAACCTACTGCTATTGCTAGTACAAGGGTTG GGTGGGTTTTTAACCTACTGCTATTGCTATTACAAGGGTTG < 41bp 1 0.0851488229503058 1 0.0948030054569244 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169622178 chr2:169622187 nonsynonymous SNV 0.288 0 30 hm5C_associated_SNPs_30812 0 0 1 0 1 CERS6 chr2:169622258 5'GT 169622258 Upstream 72bp
chr17 4623693 4623693 1 + T C OV 4623704 + 4623684 4623724 41 CCAGGGATGTCTCTGTGGAGCTGCCTTTTGTTCTTATGCAC CCAGGGATGCCTCTGTGGAGCTGCCTTTTGTTCTTATGCAC < 41bp 1 0.380767606900518 1 0.0963872373104095 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4623704 chr17:4623693 nonsynonymous SNV 0.989 4 10 hm5C_associated_SNPs_30814 0 0 1 0 2 ARRB2 chr17:4623688 3'AG 4623688 Downstream 6bp
chr17 4623693 4623693 1 + T C OV 4623704 + 4623684 4623724 41 CCAGGGATGTCTCTGTGGAGCTGCCTTTTGTTCTTATGCAC CCAGGGATGCCTCTGTGGAGCTGCCTTTTGTTCTTATGCAC < 41bp 1 0.380767606900518 1 0.0963872373104095 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4623704 chr17:4623693 nonsynonymous SNV 0.989 4 10 hm5C_associated_SNPs_30814 0 0 1 0 2 ARRB2 chr17:4623767 5'GT 4623767 Upstream 75bp
chr1 114223893 114223893 1 + T C OV 114223895 + 114223875 114223915 41 CTCGAGCAATTGAGCTCATTCAGGCTGGTGGAAATAAAGTT CTCGAGCAATTGAGCTCACTCAGGCTGGTGGAAATAAAGTT < 41bp 1 0.49969808574212 1 0.766658186912537 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MAGI3 ENSG00000081026 CDS Human protein_coding chr1:114223895 chr1:114223893 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_30815 0 0 1 0 2 MAGI3 chr1:114223820 3'AG 114223820 Downstream 74bp
chr1 114223893 114223893 1 + T C OV 114223895 + 114223875 114223915 41 CTCGAGCAATTGAGCTCATTCAGGCTGGTGGAAATAAAGTT CTCGAGCAATTGAGCTCACTCAGGCTGGTGGAAATAAAGTT < 41bp 1 0.49969808574212 1 0.766658186912537 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MAGI3 ENSG00000081026 CDS Human protein_coding chr1:114223895 chr1:114223893 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_30815 0 0 1 0 2 MAGI3 chr1:114223958 5'GT 114223958 Upstream 66bp
chr22 18567998 18567998 1 + G T OV 18567978 + 18567958 18567998 41 CTGCCCTTCAAAAAGAGTCTCCTGGCTGCCTTGATCCTCTG CTGCCCTTCAAAAAGAGTCTCCTGGCTGCCTTGATCCTCTT < 41bp 1 0.164041273909878 1 0.116539716720581 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PEX26 ENSG00000215193 CDS Human protein_coding chr22:18567978 chr22:18567998 nonsynonymous SNV 0.994 2 41 hm5C_associated_SNPs_30816 0 0 1 0 1 PEX26 chr22:18568024 5'GT 18568024 Upstream 27bp
chr21 30411809 30411809 1 + C T OV 30411804 + 30411784 30411824 41 CTTTTTGTTTTTCTCTAGAGCAGTGCGGTTTAAAGGCTATC CTTTTTGTTTTTCTCTAGAGCAGTGTGGTTTAAAGGCTATC < 41bp 1 0.321971043728634 1 0.126979678869247 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP16 ENSG00000156256 CDS Human protein_coding chr21:30411804 chr21:30411809 nonsynonymous SNV 0.939 4 26 hm5C_associated_SNPs_30819 0 0 1 0 2 USP16 chr21:30411802 3'AG 30411802 Downstream 8bp
chr21 30411809 30411809 1 + C T OV 30411804 + 30411784 30411824 41 CTTTTTGTTTTTCTCTAGAGCAGTGCGGTTTAAAGGCTATC CTTTTTGTTTTTCTCTAGAGCAGTGTGGTTTAAAGGCTATC < 41bp 1 0.321971043728634 1 0.126979678869247 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP16 ENSG00000156256 CDS Human protein_coding chr21:30411804 chr21:30411809 nonsynonymous SNV 0.939 4 26 hm5C_associated_SNPs_30819 0 0 1 0 2 USP16 chr21:30411889 5'GT 30411889 Upstream 81bp
chr5 153760019 153760019 1 + C G OV 153760010 + 153759990 153760030 41 ATCTCTTGGCTTCTTCAGACCGCATTGCTCGGAACCGCAAG ATCTCTTGGCTTCTTCAGACCGCATTGCTGGGAACCGCAAG < 41bp 1 0.191709848997351 1 0.163017392158508 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153760010 chr5:153760019 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_30821 0 0 1 0 1 GALNT10 chr5:153760008 3'AG 153760008 Downstream 12bp
chr5 153760019 153760019 1 + C G OV 153760024 + 153760004 153760044 41 TCAGACCGCATTGCTCGGAACCGCAAGACCATTGTGTGCCC TCAGACCGCATTGCTGGGAACCGCAAGACCATTGTGTGCCC < 41bp 1 0.424541239423771 1 0.163029104471207 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153760024 chr5:153760019 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_30822 0 0 1 0 1 GALNT10 chr5:153760008 3'AG 153760008 Downstream 12bp
chr6 7578101 7578101 1 + T C OV 7578111 + 7578091 7578131 41 AGTCCCCTTCTGGGGTGATTCTGCAAGAGGTATATATGTCA AGTCCCCTTCCGGGGTGATTCTGCAAGAGGTATATATGTCA < 41bp 1 0.674161592329338 1 0.924656450748444 experiment 0.651676815341325 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7578111 chr6:7578101 synonymous SNV . 0 11 hm5C_associated_SNPs_30823 0 0 1 0 2 DSP chr6:7578012 3'AG 7578012 Downstream 90bp
chr6 7578101 7578101 1 + T C OV 7578111 + 7578091 7578131 41 AGTCCCCTTCTGGGGTGATTCTGCAAGAGGTATATATGTCA AGTCCCCTTCCGGGGTGATTCTGCAAGAGGTATATATGTCA < 41bp 1 0.674161592329338 1 0.924656450748444 experiment 0.651676815341325 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7578111 chr6:7578101 synonymous SNV . 0 11 hm5C_associated_SNPs_30823 0 0 1 0 2 DSP chr6:7578119 5'GT 7578119 Upstream 19bp
chr7 73922455 73922455 1 + C T OV 73922440 + 73922420 73922460 41 CTGGGTAAGCGCTGTGACGTCCCCACCAACGGCTGCGGACC CTGGGTAAGCGCTGTGACGTCCCCACCAACGGCTGTGGACC < 41bp 1 0.52409890266677 1 0.162788093090057 experiment 0.95180219466646 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73922440 chr7:73922455 synonymous SNV . 0 36 hm5C_associated_SNPs_30824 0 0 1 0 2 GTF2IRD1 chr7:73922405 3'AG 73922405 Downstream 51bp
chr7 73922455 73922455 1 + C T OV 73922440 + 73922420 73922460 41 CTGGGTAAGCGCTGTGACGTCCCCACCAACGGCTGCGGACC CTGGGTAAGCGCTGTGACGTCCCCACCAACGGCTGTGGACC < 41bp 1 0.52409890266677 1 0.162788093090057 experiment 0.95180219466646 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73922440 chr7:73922455 synonymous SNV . 0 36 hm5C_associated_SNPs_30824 0 0 1 0 2 GTF2IRD1 chr7:73922533 5'GT 73922533 Upstream 79bp
chr22 26242207 26242207 1 + C T OV 26242222 + 26242202 26242242 41 TGCCGCGGTGAGGAGGAAAGCCCCGTGCTCCCAGATCAAGC TGCCGTGGTGAGGAGGAAAGCCCCGTGCTCCCAGATCAAGC < 41bp 1 0.317256571905785 1 0.150517135858536 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26242222 chr22:26242207 nonsynonymous SNV 0.117 5 6 hm5C_associated_SNPs_30825 0 0 0 0 1 MYO18B chr22:26242250 5'GT 26242250 Upstream 44bp
chr12 93968573 93968573 1 + T A OV 93968564 + 93968544 93968584 41 AAAAGAGGCACCAGAAGGAACTTTCTTGATTAGAGATAGCT AAAAGAGGCACCAGAAGGAACTTTCTTGAATAGAGATAGCT < 41bp 1 0.0715622723084156 1 0.105598449707031 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SOCS2 ENSG00000120833 CDS Human protein_coding chr12:93968564 chr12:93968573 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_30826 0 0 0 0 1 SOCS2 chr12:93968498 3'AG 93968498 Downstream 76bp
chr9 131345047 131345047 1 + G A OV 131345031 + 131345011 131345051 41 GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATCTGCAGC GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATCTACAGC < 41bp 1 0.116239678731588 1 0.103956699371338 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131345031 chr9:131345047 synonymous SNV . 0 37 hm5C_associated_SNPs_30827 0 0 1 0 2 SPTAN1 chr9:131344973 3'AG 131344973 Downstream 75bp
chr9 131345047 131345047 1 + G A OV 131345031 + 131345011 131345051 41 GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATCTGCAGC GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATCTACAGC < 41bp 1 0.116239678731588 1 0.103956699371338 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131345031 chr9:131345047 synonymous SNV . 0 37 hm5C_associated_SNPs_30827 0 0 1 0 2 SPTAN1 chr9:131345128 5'GT 131345128 Upstream 82bp
chr11 62550254 62550254 1 + G T OV 62550249 + 62550229 62550269 41 GCAGATCCTGTGCGGCCGCTCTGCTGCCACTATGGAGCCGT GCAGATCCTGTGCGGCCGCTCTGCTTCCACTATGGAGCCGT < 41bp 1 0.678514558419275 1 0.351754814386368 experiment 0.64297088316145 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF6L ENSG00000162227 CDS Human protein_coding chr11:62550249 chr11:62550254 nonsynonymous SNV 0.983 1 26 hm5C_associated_SNPs_30828 0 0 1 0 2 TAF6L chr11:62550165 3'AG 62550165 Downstream 90bp
chr11 62550254 62550254 1 + G T OV 62550249 + 62550229 62550269 41 GCAGATCCTGTGCGGCCGCTCTGCTGCCACTATGGAGCCGT GCAGATCCTGTGCGGCCGCTCTGCTTCCACTATGGAGCCGT < 41bp 1 0.678514558419275 1 0.351754814386368 experiment 0.64297088316145 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF6L ENSG00000162227 CDS Human protein_coding chr11:62550249 chr11:62550254 nonsynonymous SNV 0.983 1 26 hm5C_associated_SNPs_30828 0 0 1 0 2 TAF6L chr11:62550297 5'GT 62550297 Upstream 44bp
chr9 104307065 104307065 1 + G A OV 104307070 + 104307050 104307090 41 TAATCTGATAGTGGAGGAAGCAGTGCAGGAGCTGAACTCTT TAATCTGATAGTGGAAGAAGCAGTGCAGGAGCTGAACTCTT < 41bp 1 0.311196785114434 1 0.727402687072754 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF20 ENSG00000155827 CDS Human protein_coding chr9:104307070 chr9:104307065 synonymous SNV . 0 16 hm5C_associated_SNPs_30829 0 0 1 0 1 RNF20 chr9:104307049 3'AG 104307049 Downstream 17bp
chr1 57157075 57157075 1 + T G OV 57157082 + 57157062 57157102 41 AAAAGATACCAGGTGATCAGCACTCCAACAGATTTTTTTAT AAAAGATACCAGGGGATCAGCACTCCAACAGATTTTTTTAT < 41bp 1 0.0568076024247184 1 0.299238264560699 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57157082 chr1:57157075 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_30830 0 0 1 0 2 PRKAA2 chr1:57157067 3'AG 57157067 Downstream 9bp
chr1 57157075 57157075 1 + T G OV 57157082 + 57157062 57157102 41 AAAAGATACCAGGTGATCAGCACTCCAACAGATTTTTTTAT AAAAGATACCAGGGGATCAGCACTCCAACAGATTTTTTTAT < 41bp 1 0.0568076024247184 1 0.299238264560699 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57157082 chr1:57157075 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_30830 0 0 1 0 2 PRKAA2 chr1:57157160 5'GT 57157160 Upstream 86bp
chr14 24568341 24568341 1 + G C OV 24568331 + 24568311 24568351 41 GTGCCCGACCAGCGGGAGATCATCTCCTTCGGCAGCGGCTA GTGCCCGACCAGCGGGAGATCATCTCCTTCCGCAGCGGCTA < 41bp 1 0.316602143273028 1 0.160823702812195 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCK2 ENSG00000100889 CDS Human protein_coding chr14:24568331 chr14:24568341 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_30831 0 0 1 0 1 PCK2 chr14:24568258 3'AG 24568258 Downstream 84bp
chr4 26407824 26407824 1 + G A OV 26407834 + 26407814 26407854 41 ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCAT ATTTAAAAGAACGAGGGGATCAAACAGTACTTATTCTTCAT < 41bp 1 0.30193928344731 1 0.177755862474442 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBPJ ENSG00000168214 CDS Human protein_coding chr4:26407834 chr4:26407824 synonymous SNV . 0 11 hm5C_associated_SNPs_30832 0 0 1 0 2 RBPJ chr4:26407797 3'AG 26407797 Downstream 28bp
chr4 26407824 26407824 1 + G A OV 26407834 + 26407814 26407854 41 ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCAT ATTTAAAAGAACGAGGGGATCAAACAGTACTTATTCTTCAT < 41bp 1 0.30193928344731 1 0.177755862474442 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBPJ ENSG00000168214 CDS Human protein_coding chr4:26407834 chr4:26407824 synonymous SNV . 0 11 hm5C_associated_SNPs_30832 0 0 1 0 2 RBPJ chr4:26407892 5'GT 26407892 Upstream 69bp
chr15 63009818 63009818 1 + C T OV 63009833 + 63009813 63009853 41 CATCGCCGCCTCCCAGAATGCAGCTGTTTCCAACAAGAACC CATCGTCGCCTCCCAGAATGCAGCTGTTTCCAACAAGAACC < 41bp 1 0.323722417629235 1 0.108073890209198 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63009833 chr15:63009818 nonsynonymous SNV 0.962 4 6 hm5C_associated_SNPs_30833 0 0 0 0 2 TLN2 chr15:63009775 3'AG 63009775 Downstream 44bp
chr15 63009818 63009818 1 + C T OV 63009833 + 63009813 63009853 41 CATCGCCGCCTCCCAGAATGCAGCTGTTTCCAACAAGAACC CATCGTCGCCTCCCAGAATGCAGCTGTTTCCAACAAGAACC < 41bp 1 0.323722417629235 1 0.108073890209198 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63009833 chr15:63009818 nonsynonymous SNV 0.962 4 6 hm5C_associated_SNPs_30833 0 0 0 0 2 TLN2 chr15:63009888 5'GT 63009888 Upstream 71bp
chr15 63009818 63009818 1 + C T OV 63009836 + 63009816 63009856 41 CGCCGCCTCCCAGAATGCAGCTGTTTCCAACAAGAACCCTG CGTCGCCTCCCAGAATGCAGCTGTTTCCAACAAGAACCCTG < 41bp 1 0.0919332623425188 1 0.0429312288761139 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63009836 chr15:63009818 nonsynonymous SNV 0.962 4 3 hm5C_associated_SNPs_30834 0 0 0 0 2 TLN2 chr15:63009775 3'AG 63009775 Downstream 44bp
chr15 63009818 63009818 1 + C T OV 63009836 + 63009816 63009856 41 CGCCGCCTCCCAGAATGCAGCTGTTTCCAACAAGAACCCTG CGTCGCCTCCCAGAATGCAGCTGTTTCCAACAAGAACCCTG < 41bp 1 0.0919332623425188 1 0.0429312288761139 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63009836 chr15:63009818 nonsynonymous SNV 0.962 4 3 hm5C_associated_SNPs_30834 0 0 0 0 2 TLN2 chr15:63009888 5'GT 63009888 Upstream 71bp
chr7 100275154 100275154 1 + A G OV 100275144 + 100275124 100275164 41 CACGCCATCCCGCTGCGCTCCTCCTGGGTAATGACCTGTGC CACGCCATCCCGCTGCGCTCCTCCTGGGTAGTGACCTGTGC < 41bp 1 0.579605725820917 1 0.785019516944885 experiment 0.840788548358166 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GNB2 ENSG00000172354 CDS Human protein_coding chr7:100275144 chr7:100275154 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_30835 0 0 1 0 1 GNB2 chr7:100275121 3'AG 100275121 Downstream 34bp
chr12 111885191 111885191 1 + C G OV 111885210 + 111885190 111885230 41 TCCTGCTACCCCTGGTTCCACGGCCCCATCTCCAGAGTGAA TGCTGCTACCCCTGGTTCCACGGCCCCATCTCCAGAGTGAA < 41bp 1 0.262506696437719 1 0.50909948348999 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SH2B3 ENSG00000111252 CDS Human protein_coding chr12:111885210 chr12:111885191 nonsynonymous SNV 0.998 4 2 hm5C_associated_SNPs_30836 0 0 1 0 1 SH2B3 chr12:111885134 3'AG 111885134 Downstream 58bp
chr22 29695301 29695301 1 + C A OV 29695312 + 29695292 29695332 41 GCTTCCTCCCGCCACCCTTTCCGCCCCCGGGTAGGTGCAGG GCTTCCTCCAGCCACCCTTTCCGCCCCCGGGTAGGTGCAGG < 41bp 1 0.217312206255687 1 0.616612732410431 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695312 chr22:29695301 nonsynonymous SNV 0.993 3 10 hm5C_associated_SNPs_30838 0 0 1 0 2 EWSR1 chr22:29695224 3'AG 29695224 Downstream 78bp
chr22 29695301 29695301 1 + C A OV 29695312 + 29695292 29695332 41 GCTTCCTCCCGCCACCCTTTCCGCCCCCGGGTAGGTGCAGG GCTTCCTCCAGCCACCCTTTCCGCCCCCGGGTAGGTGCAGG < 41bp 1 0.217312206255687 1 0.616612732410431 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695312 chr22:29695301 nonsynonymous SNV 0.993 3 10 hm5C_associated_SNPs_30838 0 0 1 0 2 EWSR1 chr22:29695321 5'GT 29695321 Upstream 21bp
chr19 49464818 49464818 1 + C A OV 49464798 + 49464778 49464818 41 CCTGTCTCCAGGACGGCCTCCTCTCCTACTTTGGGACGCCC CCTGTCTCCAGGACGGCCTCCTCTCCTACTTTGGGACGCCA < 41bp 1 0.144782781847221 1 0.185932040214539 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BAX ENSG00000087088 CDS Human protein_coding chr19:49464798 chr19:49464818 synonymous SNV . 0 41 hm5C_associated_SNPs_30840 0 0 1 1 1 BAX chr19:49464789 3'AG 49464789 Downstream 30bp
chr22 41735127 41735127 1 + G A OV 41735129 + 41735109 41735149 41 AGGACCCTCCCCAGCACCGACAGCCTGGATGACTTCTCAGA AGGACCCTCCCCAGCACCAACAGCCTGGATGACTTCTCAGA < 41bp 1 0.276254245535558 1 0.218957453966141 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41735129 chr22:41735127 nonsynonymous SNV 0.776 1 19 hm5C_associated_SNPs_30842 0 0 1 0 1 ZC3H7B chr22:41735195 5'GT 41735195 Upstream 69bp
chr8 36692362 36692362 1 + C T OV 36692357 + 36692337 36692377 41 AATCCTTTGTGCAGTGATTCCCATGCTGAAGATATTTCCAA AATCCTTTGTGCAGTGATTCCCATGTTGAAGATATTTCCAA < 41bp 1 0.192225602276123 1 0.23422247171402 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36692357 chr8:36692362 nonsynonymous SNV 0.088 2 26 hm5C_associated_SNPs_30843 0 0 0 0 2 KCNU1 chr8:36692304 3'AG 36692304 Downstream 59bp
chr8 36692362 36692362 1 + C T OV 36692357 + 36692337 36692377 41 AATCCTTTGTGCAGTGATTCCCATGCTGAAGATATTTCCAA AATCCTTTGTGCAGTGATTCCCATGTTGAAGATATTTCCAA < 41bp 1 0.192225602276123 1 0.23422247171402 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36692357 chr8:36692362 nonsynonymous SNV 0.088 2 26 hm5C_associated_SNPs_30843 0 0 0 0 2 KCNU1 chr8:36692386 5'GT 36692386 Upstream 25bp
chr5 176520496 176520496 1 + C G OV 176520483 + 176520463 176520503 41 GCGTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCCGGCCTCG GCGTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCGGGCCTCG < 41bp 1 0.133553830235689 1 0.0607220828533173 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176520483 chr5:176520496 nonsynonymous SNV 0.012 0 34 hm5C_associated_SNPs_30844 0 0 1 0 3 FGFR4 chr5:176520407 3'AG 176520407 Downstream 90bp
chr5 176520496 176520496 1 + C G OV 176520483 + 176520463 176520503 41 GCGTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCCGGCCTCG GCGTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCGGGCCTCG < 41bp 1 0.133553830235689 1 0.0607220828533173 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176520483 chr5:176520496 nonsynonymous SNV 0.012 0 34 hm5C_associated_SNPs_30844 0 0 1 0 3 FGFR4 chr5:176520502 5'GT 176520502 Upstream 7bp
chr5 176520496 176520496 1 + C G OV 176520483 + 176520463 176520503 41 GCGTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCCGGCCTCG GCGTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCGGGCCTCG < 41bp 1 0.133553830235689 1 0.0607220828533173 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176520483 chr5:176520496 nonsynonymous SNV 0.012 0 34 hm5C_associated_SNPs_30844 0 0 1 0 3 FGFR4 chr5:176520552 5'GT 176520552 Upstream 57bp
chr2 46808143 46808143 1 + T C OV 46808147 + 46808127 46808167 41 TTTGATGAGGCTATCATAGCCATTTTAACTCCAAAGAAACA TTTGATGAGGCTATCACAGCCATTTTAACTCCAAAGAAACA < 41bp 1 0.0504120076865139 1 0.0617367625236511 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RHOQ ENSG00000119729 CDS Human protein_coding chr2:46808147 chr2:46808143 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_30845 0 0 0 0 1 RHOQ chr2:46808067 3'AG 46808067 Downstream 77bp
chr17 66038278 66038278 1 + T C OV 66038276 + 66038256 66038296 41 TTGATTCCGAAATTTGTGTCCTTCTTGGGCAGAACTGATTG TTGATTCCGAAATTTGTGTCCTCCTTGGGCAGAACTGATTG < 41bp 1 0.533931839136298 1 0.802408814430237 experiment 0.932136321727403 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66038276 chr17:66038278 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_30847 0 0 1 0 1 KPNA2 chr17:66038201 3'AG 66038201 Downstream 78bp
chr2 233671363 233671363 1 + A T OV 233671347 + 233671327 233671367 41 GGGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATG GGGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCTTATG < 41bp 1 0.121527482528067 1 0.0490192174911499 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671347 chr2:233671363 nonsynonymous SNV 0.987 2 37 hm5C_associated_SNPs_30848 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 5bp
chr2 233671363 233671363 1 + A T OV 233671348 + 233671328 233671368 41 GGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGG GGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCTTATGG < 41bp 1 0.18352233617564 1 0.150334060192108 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671348 chr2:233671363 nonsynonymous SNV 0.987 2 36 hm5C_associated_SNPs_30849 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 5bp
chr2 233671363 233671363 1 + A T OV 233671351 + 233671331 233671371 41 TCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAA TCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCTTATGGTAA < 41bp 1 0.102726110208024 1 0.418337285518646 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671351 chr2:233671363 nonsynonymous SNV 0.987 2 33 hm5C_associated_SNPs_30850 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 5bp
chr2 233671363 233671363 1 + A T OV 233671354 + 233671334 233671374 41 CTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTA CTTTTCTCCAGGTCCAGCTCCCCCTCCTCTTATGGTAAGTA < 41bp 1 0.0455916616316666 1 0.06548210978508 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671354 chr2:233671363 nonsynonymous SNV 0.987 2 30 hm5C_associated_SNPs_30851 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 5bp
chr2 233671363 233671363 1 + A T OV 233671355 + 233671335 233671375 41 TTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTAC TTTTCTCCAGGTCCAGCTCCCCCTCCTCTTATGGTAAGTAC < 41bp 1 0.0485040549527913 1 0.143973976373672 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671355 chr2:233671363 nonsynonymous SNV 0.987 2 29 hm5C_associated_SNPs_30852 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 5bp
chr2 233671363 233671363 1 + A T OV 233671356 + 233671336 233671376 41 TTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTACC TTTCTCCAGGTCCAGCTCCCCCTCCTCTTATGGTAAGTACC < 41bp 1 0.0246184888069601 1 0.105941951274872 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671356 chr2:233671363 nonsynonymous SNV 0.987 2 28 hm5C_associated_SNPs_30853 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 5bp
chr2 233671363 233671363 1 + A T OV 233671357 + 233671337 233671377 41 TTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTACCT TTCTCCAGGTCCAGCTCCCCCTCCTCTTATGGTAAGTACCT < 41bp 1 0.244228277273653 1 0.184727936983109 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671357 chr2:233671363 nonsynonymous SNV 0.987 2 27 hm5C_associated_SNPs_30854 0 0 1 0 1 GIGYF2 chr2:233671367 5'GT 233671367 Upstream 5bp
chr6 168291648 168291648 1 + G T OV 168291650 + 168291630 168291670 41 AAAGGAGAGAGCTGACGGGTCTGGCTATGGCTCCACCCTTC AAAGGAGAGAGCTGACGGTTCTGGCTATGGCTCCACCCTTC < 41bp 1 0.68211439273427 1 0.389436036348343 experiment 0.63577121453146 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168291650 chr6:168291648 synonymous SNV . 0 19 hm5C_associated_SNPs_30855 0 0 1 0 1 AFDN chr6:168291709 5'GT 168291709 Upstream 62bp
chr1 153742690 153742690 1 + G C OV 153742703 + 153742683 153742723 41 TAGACTGGGAGACCTTTGAGCAGTATTGTGCCTGGCAGCTC TAGACTGCGAGACCTTTGAGCAGTATTGTGCCTGGCAGCTC < 41bp 1 0.593389925138645 1 0.196445226669312 experiment 0.813220149722711 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control INTS3 ENSG00000143624 CDS Human protein_coding chr1:153742703 chr1:153742690 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_30857 0 0 1 0 1 INTS3 chr1:153742674 3'AG 153742674 Downstream 17bp
chr4 5733349 5733349 1 + G T OV 5733343 + 5733323 5733363 41 AGGTTTCTCAGCCGCACCTTCCTCCGGGTGAACGCCTTCCC AGGTTTCTCAGCCGCACCTTCCTCCGTGTGAACGCCTTCCC < 41bp 1 0.0520740321035781 1 0.149190127849579 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EVC ENSG00000072840 CDS Human protein_coding chr4:5733343 chr4:5733349 synonymous SNV . 0 27 hm5C_associated_SNPs_30859 0 0 1 0 1 EVC chr4:5733384 5'GT 5733384 Upstream 36bp
chr19 803583 803583 1 + C A OV 803568 + 803548 803588 41 CCTTCTCTTGCAGCGGGGATCTGACGAGCTTTTCTCTACTT CCTTCTCTTGCAGCGGGGATCTGACGAGCTTTTCTATACTT < 41bp 1 0.354895889401893 1 0.272875726222992 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:803568 chr19:803583 nonsynonymous SNV 0.397 3 36 hm5C_associated_SNPs_30860 0 0 1 0 2 PTBP1 chr19:803561 3'AG 803561 Downstream 23bp
chr19 803583 803583 1 + C A OV 803568 + 803548 803588 41 CCTTCTCTTGCAGCGGGGATCTGACGAGCTTTTCTCTACTT CCTTCTCTTGCAGCGGGGATCTGACGAGCTTTTCTATACTT < 41bp 1 0.354895889401893 1 0.272875726222992 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:803568 chr19:803583 nonsynonymous SNV 0.397 3 36 hm5C_associated_SNPs_30860 0 0 1 0 2 PTBP1 chr19:803636 5'GT 803636 Upstream 54bp
chr15 57554348 57554348 1 + T C OV 57554338 + 57554318 57554358 41 CAGTCTCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCA CAGTCTCAATGGCAATCATTCAGTCCTGTCCAGTACAGTCA < 41bp 1 0.177239582214747 1 0.15810638666153 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554338 chr15:57554348 synonymous SNV . 0 31 hm5C_associated_SNPs_30861 0 0 1 0 2 TCF12 chr15:57554292 3'AG 57554292 Downstream 57bp
chr15 57554348 57554348 1 + T C OV 57554338 + 57554318 57554358 41 CAGTCTCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCA CAGTCTCAATGGCAATCATTCAGTCCTGTCCAGTACAGTCA < 41bp 1 0.177239582214747 1 0.15810638666153 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554338 chr15:57554348 synonymous SNV . 0 31 hm5C_associated_SNPs_30861 0 0 1 0 2 TCF12 chr15:57554406 5'GT 57554406 Upstream 59bp
chr15 57554348 57554348 1 + T C OV 57554343 + 57554323 57554363 41 TCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCACTACT TCAATGGCAATCATTCAGTCCTGTCCAGTACAGTCACTACT < 41bp 1 0.0762079613031254 1 0.0329412221908569 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554343 chr15:57554348 synonymous SNV . 0 26 hm5C_associated_SNPs_30862 0 0 1 0 2 TCF12 chr15:57554292 3'AG 57554292 Downstream 57bp
chr15 57554348 57554348 1 + T C OV 57554343 + 57554323 57554363 41 TCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCACTACT TCAATGGCAATCATTCAGTCCTGTCCAGTACAGTCACTACT < 41bp 1 0.0762079613031254 1 0.0329412221908569 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554343 chr15:57554348 synonymous SNV . 0 26 hm5C_associated_SNPs_30862 0 0 1 0 2 TCF12 chr15:57554406 5'GT 57554406 Upstream 59bp
chr15 57554348 57554348 1 + T C OV 57554353 + 57554333 57554373 41 TCATTCAGTCCTGTCTAGTACAGTCACTACTTCAAGCACAG TCATTCAGTCCTGTCCAGTACAGTCACTACTTCAAGCACAG < 41bp 1 0.142608774060143 1 0.0714970529079437 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554353 chr15:57554348 synonymous SNV . 0 16 hm5C_associated_SNPs_30863 0 0 1 0 2 TCF12 chr15:57554292 3'AG 57554292 Downstream 57bp
chr15 57554348 57554348 1 + T C OV 57554353 + 57554333 57554373 41 TCATTCAGTCCTGTCTAGTACAGTCACTACTTCAAGCACAG TCATTCAGTCCTGTCCAGTACAGTCACTACTTCAAGCACAG < 41bp 1 0.142608774060143 1 0.0714970529079437 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554353 chr15:57554348 synonymous SNV . 0 16 hm5C_associated_SNPs_30863 0 0 1 0 2 TCF12 chr15:57554406 5'GT 57554406 Upstream 59bp
chr15 57554348 57554348 1 + T C OV 57554357 + 57554337 57554377 41 TCAGTCCTGTCTAGTACAGTCACTACTTCAAGCACAGACCT TCAGTCCTGTCCAGTACAGTCACTACTTCAAGCACAGACCT < 41bp 1 0.512401031735325 1 0.267135560512543 experiment 0.97519793652935 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554357 chr15:57554348 synonymous SNV . 0 12 hm5C_associated_SNPs_30864 0 0 1 0 2 TCF12 chr15:57554292 3'AG 57554292 Downstream 57bp
chr15 57554348 57554348 1 + T C OV 57554357 + 57554337 57554377 41 TCAGTCCTGTCTAGTACAGTCACTACTTCAAGCACAGACCT TCAGTCCTGTCCAGTACAGTCACTACTTCAAGCACAGACCT < 41bp 1 0.512401031735325 1 0.267135560512543 experiment 0.97519793652935 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554357 chr15:57554348 synonymous SNV . 0 12 hm5C_associated_SNPs_30864 0 0 1 0 2 TCF12 chr15:57554406 5'GT 57554406 Upstream 59bp
chr15 57554348 57554348 1 + T C OV 57554359 + 57554339 57554379 41 AGTCCTGTCTAGTACAGTCACTACTTCAAGCACAGACCTGA AGTCCTGTCCAGTACAGTCACTACTTCAAGCACAGACCTGA < 41bp 1 0.344953886115236 1 0.0856913626194 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554359 chr15:57554348 synonymous SNV . 0 10 hm5C_associated_SNPs_30865 0 0 1 0 2 TCF12 chr15:57554292 3'AG 57554292 Downstream 57bp
chr15 57554348 57554348 1 + T C OV 57554359 + 57554339 57554379 41 AGTCCTGTCTAGTACAGTCACTACTTCAAGCACAGACCTGA AGTCCTGTCCAGTACAGTCACTACTTCAAGCACAGACCTGA < 41bp 1 0.344953886115236 1 0.0856913626194 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554359 chr15:57554348 synonymous SNV . 0 10 hm5C_associated_SNPs_30865 0 0 1 0 2 TCF12 chr15:57554406 5'GT 57554406 Upstream 59bp
chr15 57554348 57554348 1 + T C OV 57554365 + 57554345 57554385 41 GTCTAGTACAGTCACTACTTCAAGCACAGACCTGAACCATA GTCCAGTACAGTCACTACTTCAAGCACAGACCTGAACCATA < 41bp 1 0.228313989845441 1 0.524740040302277 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554365 chr15:57554348 synonymous SNV . 0 4 hm5C_associated_SNPs_30866 0 0 1 0 2 TCF12 chr15:57554292 3'AG 57554292 Downstream 57bp
chr15 57554348 57554348 1 + T C OV 57554365 + 57554345 57554385 41 GTCTAGTACAGTCACTACTTCAAGCACAGACCTGAACCATA GTCCAGTACAGTCACTACTTCAAGCACAGACCTGAACCATA < 41bp 1 0.228313989845441 1 0.524740040302277 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554365 chr15:57554348 synonymous SNV . 0 4 hm5C_associated_SNPs_30866 0 0 1 0 2 TCF12 chr15:57554406 5'GT 57554406 Upstream 59bp
chr17 27000471 27000471 1 + G A OV 27000491 + 27000471 27000511 41 GATGAAGGCGAGGTGGTACCCCGAGTCACCAAGAAATTTGT AATGAAGGCGAGGTGGTACCCCGAGTCACCAAGAAATTTGT < 41bp 1 0.433259286172578 1 0.806407928466797 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27000491 chr17:27000471 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_30868 0 0 1 0 2 SUPT6H chr17:27000389 3'AG 27000389 Downstream 83bp
chr17 27000471 27000471 1 + G A OV 27000491 + 27000471 27000511 41 GATGAAGGCGAGGTGGTACCCCGAGTCACCAAGAAATTTGT AATGAAGGCGAGGTGGTACCCCGAGTCACCAAGAAATTTGT < 41bp 1 0.433259286172578 1 0.806407928466797 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27000491 chr17:27000471 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_30868 0 0 1 0 2 SUPT6H chr17:27000528 5'GT 27000528 Upstream 58bp
chr20 35862446 35862446 1 + C T OV 35862428 + 35862408 35862448 41 CTCCCCATCATTCAGTGGATCCGGATTGGTGCCAATGTCTC CTCCCCATCATTCAGTGGATCCGGATTGGTGCCAATGTTTC < 41bp 1 0.442357620219012 1 0.359706193208694 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35862428 chr20:35862446 synonymous SNV . 0 39 hm5C_associated_SNPs_30869 0 0 1 0 2 RPN2 chr20:35862423 3'AG 35862423 Downstream 24bp
chr20 35862446 35862446 1 + C T OV 35862428 + 35862408 35862448 41 CTCCCCATCATTCAGTGGATCCGGATTGGTGCCAATGTCTC CTCCCCATCATTCAGTGGATCCGGATTGGTGCCAATGTTTC < 41bp 1 0.442357620219012 1 0.359706193208694 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35862428 chr20:35862446 synonymous SNV . 0 39 hm5C_associated_SNPs_30869 0 0 1 0 2 RPN2 chr20:35862498 5'GT 35862498 Upstream 53bp
chr17 73486372 73486372 1 + A C OV 73486373 + 73486353 73486393 41 AGTCCTCTGGGTTCTGGCAACTGCCTGTGGAGAGGCCCGTG AGTCCTCTGGGTTCTGGCACCTGCCTGTGGAGAGGCCCGTG < 41bp 1 0.432508435215001 1 0.0931978821754456 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73486373 chr17:73486372 nonsynonymous SNV 0.973 3 20 hm5C_associated_SNPs_30870 0 0 1 0 2 TMEM94 chr17:73486315 3'AG 73486315 Downstream 58bp
chr17 73486372 73486372 1 + A C OV 73486373 + 73486353 73486393 41 AGTCCTCTGGGTTCTGGCAACTGCCTGTGGAGAGGCCCGTG AGTCCTCTGGGTTCTGGCACCTGCCTGTGGAGAGGCCCGTG < 41bp 1 0.432508435215001 1 0.0931978821754456 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73486373 chr17:73486372 nonsynonymous SNV 0.973 3 20 hm5C_associated_SNPs_30870 0 0 1 0 2 TMEM94 chr17:73486431 5'GT 73486431 Upstream 60bp
chr10 105172955 105172955 1 + G A OV 105172958 + 105172938 105172978 41 CTTCCTACAGCCTGGACGCCCACTCACCCGACTCTCTTGCC CTTCCTACAGCCTGGACACCCACTCACCCGACTCTCTTGCC < 41bp 1 0.151664942161367 1 0.0667211711406708 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105172958 chr10:105172955 nonsynonymous SNV 0.490 0 18 hm5C_associated_SNPs_30871 0 0 1 0 1 PDCD11 chr10:105172873 3'AG 105172873 Downstream 83bp
chr20 19970881 19970881 1 + A G OV 19970861 + 19970841 19970881 41 GAGAAAATCAAAGTCAAGTTCATGACCATGCAGAAGATGTA GAGAAAATCAAAGTCAAGTTCATGACCATGCAGAAGATGTG < 41bp 1 0.420704800458826 1 0.153432309627533 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIN2 ENSG00000132669 CDS Human protein_coding chr20:19970861 chr20:19970881 nonsynonymous SNV 0.995 3 41 hm5C_associated_SNPs_30872 0 0 0 0 1 RIN2 chr20:19970955 5'GT 19970955 Upstream 75bp
chr8 42927440 42927440 1 + G C OV 42927423 + 42927403 42927443 41 GATGCAAAGAATTATCATGCCTGGCAGCATCGACAATGGGT GATGCAAAGAATTATCATGCCTGGCAGCATCGACAATCGGT < 41bp 1 0.462393501976013 1 0.0525716245174408 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FNTA ENSG00000168522;ENSG00000254673 CDS Human other chr8:42927423 chr8:42927440 nonsynonymous SNV 0.998 4 38 hm5C_associated_SNPs_30873 0 0 0 0 1 FNTA chr8:42927450 5'GT 42927450 Upstream 11bp
chr5 32093024 32093024 1 + T G OV 32093044 + 32093024 32093064 41 TTCTAGTCTCAGCGGGGGACCAGCAAAGATTACAGTCTGTT GTCTAGTCTCAGCGGGGGACCAGCAAAGATTACAGTCTGTT < 41bp 1 0.153838734330659 1 0.429328799247742 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32093044 chr5:32093024 nonsynonymous SNV 0.898 4 1 hm5C_associated_SNPs_30874 0 0 0 0 1 PDZD2 chr5:32093013 3'AG 32093013 Downstream 12bp
chr3 10127584 10127584 1 + C A OV 10127599 + 10127579 10127619 41 ACAGCCAGCCTTTGGAGGAACTACTCAGGTGAGTCATAACT ACAGCAAGCCTTTGGAGGAACTACTCAGGTGAGTCATAACT < 41bp 1 0.16363660049984 1 0.074846088886261 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10127599 chr3:10127584 nonsynonymous SNV 0.103 0 6 hm5C_associated_SNPs_30875 0 0 1 0 2 FANCD2 chr3:10127496 3'AG 10127496 Downstream 89bp
chr3 10127584 10127584 1 + C A OV 10127599 + 10127579 10127619 41 ACAGCCAGCCTTTGGAGGAACTACTCAGGTGAGTCATAACT ACAGCAAGCCTTTGGAGGAACTACTCAGGTGAGTCATAACT < 41bp 1 0.16363660049984 1 0.074846088886261 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10127599 chr3:10127584 nonsynonymous SNV 0.103 0 6 hm5C_associated_SNPs_30875 0 0 1 0 2 FANCD2 chr3:10127606 5'GT 10127606 Upstream 23bp
chr10 17276768 17276768 1 + G A OV 17276757 + 17276737 17276777 41 CGCCAGGCAAAGCAGGAGTCCACTGAGTACCGGAGACAGGT CGCCAGGCAAAGCAGGAGTCCACTGAGTACCAGAGACAGGT < 41bp 1 0.27838676799081 1 0.121511608362198 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276757 chr10:17276768 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_30876 0 0 1 0 2 VIM chr10:17276692 3'AG 17276692 Downstream 77bp
chr10 17276768 17276768 1 + G A OV 17276757 + 17276737 17276777 41 CGCCAGGCAAAGCAGGAGTCCACTGAGTACCGGAGACAGGT CGCCAGGCAAAGCAGGAGTCCACTGAGTACCAGAGACAGGT < 41bp 1 0.27838676799081 1 0.121511608362198 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276757 chr10:17276768 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_30876 0 0 1 0 2 VIM chr10:17276817 5'GT 17276817 Upstream 50bp
chr21 17250151 17250151 1 + G C OV 17250131 + 17250111 17250151 41 TAAGAAATTAAATGAGCAAGCCGCAGAACTCTTCGAATCTG TAAGAAATTAAATGAGCAAGCCGCAGAACTCTTCGAATCTC < 41bp 1 0.518039027149889 1 0.406304895877838 experiment 0.963921945700221 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP25 ENSG00000155313 CDS Human protein_coding chr21:17250131 chr21:17250151 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_30880 0 0 1 0 1 USP25 chr21:17250115 3'AG 17250115 Downstream 37bp
chr19 42392892 42392892 1 + G A OV 42392901 + 42392881 42392921 41 CCCACCTCATGGCCCTCCTGCAGCACGTGGCCCTGCAGTTT CCCACCTCATGACCCTCCTGCAGCACGTGGCCCTGCAGTTT < 41bp 1 0.499768995804621 1 0.346749097108841 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42392901 chr19:42392892 nonsynonymous SNV 1.000 5 12 hm5C_associated_SNPs_30881 0 0 1 0 2 ARHGEF1 chr19:42392823 3'AG 42392823 Downstream 70bp
chr19 42392892 42392892 1 + G A OV 42392901 + 42392881 42392921 41 CCCACCTCATGGCCCTCCTGCAGCACGTGGCCCTGCAGTTT CCCACCTCATGACCCTCCTGCAGCACGTGGCCCTGCAGTTT < 41bp 1 0.499768995804621 1 0.346749097108841 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42392901 chr19:42392892 nonsynonymous SNV 1.000 5 12 hm5C_associated_SNPs_30881 0 0 1 0 2 ARHGEF1 chr19:42392936 5'GT 42392936 Upstream 45bp
chr19 42392892 42392892 1 + G A OV 42392911 + 42392891 42392931 41 GGCCCTCCTGCAGCACGTGGCCCTGCAGTTTGAGCCAGGAC GACCCTCCTGCAGCACGTGGCCCTGCAGTTTGAGCCAGGAC < 41bp 1 0.073877379583343 1 0.0664577186107635 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42392911 chr19:42392892 nonsynonymous SNV 1.000 5 2 hm5C_associated_SNPs_30882 0 0 1 0 2 ARHGEF1 chr19:42392823 3'AG 42392823 Downstream 70bp
chr19 42392892 42392892 1 + G A OV 42392911 + 42392891 42392931 41 GGCCCTCCTGCAGCACGTGGCCCTGCAGTTTGAGCCAGGAC GACCCTCCTGCAGCACGTGGCCCTGCAGTTTGAGCCAGGAC < 41bp 1 0.073877379583343 1 0.0664577186107635 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42392911 chr19:42392892 nonsynonymous SNV 1.000 5 2 hm5C_associated_SNPs_30882 0 0 1 0 2 ARHGEF1 chr19:42392936 5'GT 42392936 Upstream 45bp
chr6 3015782 3015782 1 + A T OV 3015789 + 3015769 3015809 41 GCTGTACTGGTTCAGCGTGCCAGCCATCCTGAAGGGCTGGA GCTGTACTGGTTCTGCGTGCCAGCCATCCTGAAGGGCTGGA < 41bp 1 0.432495953842077 1 0.236064076423645 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NQO2 ENSG00000124588 CDS Human protein_coding chr6:3015789 chr6:3015782 nonsynonymous SNV 0.488 4 14 hm5C_associated_SNPs_30883 0 0 1 0 2 NQO2 chr6:3015764 3'AG 3015764 Downstream 19bp
chr6 3015782 3015782 1 + A T OV 3015789 + 3015769 3015809 41 GCTGTACTGGTTCAGCGTGCCAGCCATCCTGAAGGGCTGGA GCTGTACTGGTTCTGCGTGCCAGCCATCCTGAAGGGCTGGA < 41bp 1 0.432495953842077 1 0.236064076423645 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NQO2 ENSG00000124588 CDS Human protein_coding chr6:3015789 chr6:3015782 nonsynonymous SNV 0.488 4 14 hm5C_associated_SNPs_30883 0 0 1 0 2 NQO2 chr6:3015877 5'GT 3015877 Upstream 96bp
chr3 61975351 61975351 1 + T A OV 61975349 + 61975329 61975369 41 CTAGTGTCAGCTGTGGGGGCCGTCACCAGTCTCCTATTGAC CTAGTGTCAGCTGTGGGGGCCGACACCAGTCTCCTATTGAC < 41bp 1 0.29066988102299 1 0.441435992717743 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:61975349 chr3:61975351 synonymous SNV . 0 23 hm5C_associated_SNPs_30884 0 0 1 0 1 PTPRG chr3:61975299 3'AG 61975299 Downstream 53bp
chr6 31602045 31602045 1 + C G OV 31602058 + 31602038 31602078 41 CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAG CTGGATTGTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAG < 41bp 1 0.541203188987209 1 0.207151740789413 experiment 0.917593622025582 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602058 chr6:31602045 nonsynonymous SNV 1.000 0 8 hm5C_associated_SNPs_30885 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 33bp
chr6 31602045 31602045 1 + C G OV 31602058 + 31602038 31602078 41 CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAG CTGGATTGTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAG < 41bp 1 0.541203188987209 1 0.207151740789413 experiment 0.917593622025582 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602058 chr6:31602045 nonsynonymous SNV 1.000 0 8 hm5C_associated_SNPs_30885 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 98bp
chr6 31602045 31602045 1 + C G OV 31602059 + 31602039 31602079 41 TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGG TGGATTGTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGG < 41bp 1 0.530479647712105 1 0.804163336753845 experiment 0.93904070457579 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602059 chr6:31602045 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_30886 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 33bp
chr6 31602045 31602045 1 + C G OV 31602059 + 31602039 31602079 41 TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGG TGGATTGTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGG < 41bp 1 0.530479647712105 1 0.804163336753845 experiment 0.93904070457579 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602059 chr6:31602045 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_30886 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 98bp
chr18 13096261 13096261 1 + C T OV 13096273 + 13096253 13096293 41 CTGGCCAGCGCATTGCCTCACAGTCACGCCGCAGCATGGAT CTGGCCAGTGCATTGCCTCACAGTCACGCCGCAGCATGGAT < 41bp 1 0.114787349240405 1 0.0915606617927551 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13096273 chr18:13096261 nonsynonymous SNV 0.992 4 9 hm5C_associated_SNPs_30887 0 0 1 1 1 CEP192 chr18:13096183 3'AG 13096183 Downstream 79bp
chr8 48883167 48883167 1 + G A OV 48883170 + 48883150 48883190 41 ACATCTTGCTGTGTGGCGACCCTGGTACCAGCAAGTCCCAG ACATCTTGCTGTGTGGCAACCCTGGTACCAGCAAGTCCCAG < 41bp 1 0.381784460793978 1 0.416838347911835 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48883170 chr8:48883167 nonsynonymous SNV 0.912 4 18 hm5C_associated_SNPs_30888 0 0 1 0 1 MCM4 chr8:48883071 3'AG 48883071 Downstream 97bp
chr18 13096263 13096263 1 + C T OV 13096273 + 13096253 13096293 41 CTGGCCAGCGCATTGCCTCACAGTCACGCCGCAGCATGGAT CTGGCCAGCGTATTGCCTCACAGTCACGCCGCAGCATGGAT < 41bp 1 0.114560790276324 1 0.148914635181427 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13096273 chr18:13096263 nonsynonymous SNV 0.991 4 11 hm5C_associated_SNPs_30889 0 0 1 1 1 CEP192 chr18:13096183 3'AG 13096183 Downstream 81bp
chr2 217364707 217364707 1 + C T OV 217364687 + 217364667 217364707 41 TATAGACCAAGATGAAGAGACGAGCTGTGGGGATCTGGCAC TATAGACCAAGATGAAGAGACGAGCTGTGGGGATCTGGCAT < 41bp 1 0.620629675424509 1 0.458844125270844 experiment 0.758740649150982 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364687 chr2:217364707 synonymous SNV . 0 41 hm5C_associated_SNPs_30890 0 0 1 0 2 RPL37A chr2:217364672 3'AG 217364672 Downstream 36bp
chr2 217364707 217364707 1 + C T OV 217364687 + 217364667 217364707 41 TATAGACCAAGATGAAGAGACGAGCTGTGGGGATCTGGCAC TATAGACCAAGATGAAGAGACGAGCTGTGGGGATCTGGCAT < 41bp 1 0.620629675424509 1 0.458844125270844 experiment 0.758740649150982 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364687 chr2:217364707 synonymous SNV . 0 41 hm5C_associated_SNPs_30890 0 0 1 0 2 RPL37A chr2:217364754 5'GT 217364754 Upstream 48bp
chr2 217364707 217364707 1 + C T OV 217364705 + 217364685 217364725 41 GACGAGCTGTGGGGATCTGGCACTGTGGTTCCTGCATGAAG GACGAGCTGTGGGGATCTGGCATTGTGGTTCCTGCATGAAG < 41bp 1 0.41594933357456 1 0.121790856122971 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364705 chr2:217364707 synonymous SNV . 0 23 hm5C_associated_SNPs_30891 0 0 1 0 2 RPL37A chr2:217364672 3'AG 217364672 Downstream 36bp
chr2 217364707 217364707 1 + C T OV 217364705 + 217364685 217364725 41 GACGAGCTGTGGGGATCTGGCACTGTGGTTCCTGCATGAAG GACGAGCTGTGGGGATCTGGCATTGTGGTTCCTGCATGAAG < 41bp 1 0.41594933357456 1 0.121790856122971 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364705 chr2:217364707 synonymous SNV . 0 23 hm5C_associated_SNPs_30891 0 0 1 0 2 RPL37A chr2:217364754 5'GT 217364754 Upstream 48bp
chr7 99661772 99661772 1 + A C OV 99661756 + 99661736 99661776 41 GTGCACCAAGTGTGGGAAAGCTTTCAGCCACAGCTCAAACC GTGCACCAAGTGTGGGAAAGCTTTCAGCCACAGCTCCAACC < 41bp 1 0.152105124983439 1 0.0340260565280914 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZSCAN21 ENSG00000166529 CDS Human protein_coding chr7:99661756 chr7:99661772 nonsynonymous SNV 0.993 1 37 hm5C_associated_SNPs_30892 0 0 1 0 1 ZSCAN21 chr7:99661706 3'AG 99661706 Downstream 67bp
chr19 46509877 46509877 1 + C A OV 46509891 + 46509871 46509911 41 CGGAACCGCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCC CGGAACAGCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCC < 41bp 1 0.122427568762207 1 0.0816678404808044 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509891 chr19:46509877 nonsynonymous SNV 0.937 1 7 hm5C_associated_SNPs_30893 0 0 1 0 1 CCDC61 chr19:46509974 5'GT 46509974 Upstream 98bp
chr19 46509877 46509877 1 + C A OV 46509892 + 46509872 46509912 41 GGAACCGCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCCC GGAACAGCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCCC < 41bp 1 0.29136637264222 1 0.0567793548107147 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509892 chr19:46509877 nonsynonymous SNV 0.937 1 6 hm5C_associated_SNPs_30894 0 0 1 0 1 CCDC61 chr19:46509974 5'GT 46509974 Upstream 98bp
chr3 38022322 38022322 1 + C T OV 38022310 + 38022290 38022330 41 CCCTTCTTTGAGGGCCTGAGCCGGGAGGACGACGTGTACAG CCCTTCTTTGAGGGCCTGAGCCGGGAGGACGATGTGTACAG < 41bp 1 0.769033934206609 1 0.688433170318604 experiment 0.461932131586782 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CTDSPL ENSG00000144677 CDS Human protein_coding chr3:38022310 chr3:38022322 synonymous SNV . 0 33 hm5C_associated_SNPs_30895 0 0 1 0 1 CTDSPL chr3:38022233 3'AG 38022233 Downstream 90bp
chr21 47975908 47975908 1 + A C OV 47975902 + 47975882 47975922 41 TCCTGTTTAACAGATGACATCCCAAAAAAGAAGATAGCAAG TCCTGTTTAACAGATGACATCCCAAACAAGAAGATAGCAAG < 41bp 1 0.167245317910054 1 0.518504977226257 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47975902 chr21:47975908 nonsynonymous SNV 0.995 4 27 hm5C_associated_SNPs_30896 0 0 1 0 2 DIP2A chr21:47975895 3'AG 47975895 Downstream 14bp
chr21 47975908 47975908 1 + A C OV 47975902 + 47975882 47975922 41 TCCTGTTTAACAGATGACATCCCAAAAAAGAAGATAGCAAG TCCTGTTTAACAGATGACATCCCAAACAAGAAGATAGCAAG < 41bp 1 0.167245317910054 1 0.518504977226257 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47975902 chr21:47975908 nonsynonymous SNV 0.995 4 27 hm5C_associated_SNPs_30896 0 0 1 0 2 DIP2A chr21:47976004 5'GT 47976004 Upstream 97bp
chr19 10935775 10935775 1 + G T OV 10935765 + 10935745 10935785 41 GATGGGGCCCAGGAGAACACCTTCTCCATGGACCCCCAACT GATGGGGCCCAGGAGAACACCTTCTCCATGTACCCCCAACT < 41bp 1 0.143973997743491 1 0.156082719564438 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10935765 chr19:10935775 nonsynonymous SNV 1.000 5 31 hm5C_associated_SNPs_30897 0 0 1 0 1 DNM2 chr19:10935733 3'AG 10935733 Downstream 43bp
chrX 47104861 47104861 1 + C A OV 47104877 + 47104857 47104897 41 AGACCCTGGAGAAGGAAAACCCCTGGTGAGGGGCCAGAGCG AGACACTGGAGAAGGAAAACCCCTGGTGAGGGGCCAGAGCG < 41bp 1 0.317365447215309 1 0.293574452400208 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47104877 chrX:47104861 synonymous SNV . 0 5 hm5C_associated_SNPs_30898 0 0 1 0 2 USP11 chrX:47104769 3'AG 47104769 Downstream 93bp
chrX 47104861 47104861 1 + C A OV 47104877 + 47104857 47104897 41 AGACCCTGGAGAAGGAAAACCCCTGGTGAGGGGCCAGAGCG AGACACTGGAGAAGGAAAACCCCTGGTGAGGGGCCAGAGCG < 41bp 1 0.317365447215309 1 0.293574452400208 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47104877 chrX:47104861 synonymous SNV . 0 5 hm5C_associated_SNPs_30898 0 0 1 0 2 USP11 chrX:47104881 5'GT 47104881 Upstream 21bp
chrX 47104862 47104862 1 + C T OV 47104877 + 47104857 47104897 41 AGACCCTGGAGAAGGAAAACCCCTGGTGAGGGGCCAGAGCG AGACCTTGGAGAAGGAAAACCCCTGGTGAGGGGCCAGAGCG < 41bp 1 0.308925848232844 1 0.275924861431122 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47104877 chrX:47104862 synonymous SNV . 0 6 hm5C_associated_SNPs_30899 0 0 1 0 2 USP11 chrX:47104769 3'AG 47104769 Downstream 94bp
chrX 47104862 47104862 1 + C T OV 47104877 + 47104857 47104897 41 AGACCCTGGAGAAGGAAAACCCCTGGTGAGGGGCCAGAGCG AGACCTTGGAGAAGGAAAACCCCTGGTGAGGGGCCAGAGCG < 41bp 1 0.308925848232844 1 0.275924861431122 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47104877 chrX:47104862 synonymous SNV . 0 6 hm5C_associated_SNPs_30899 0 0 1 0 2 USP11 chrX:47104881 5'GT 47104881 Upstream 20bp
chr5 122154677 122154677 1 + G T OV 122154694 + 122154674 122154714 41 TCAGAACTACTTAGTGACTACATTCGTCTTATTGCTGCAGT TCATAACTACTTAGTGACTACATTCGTCTTATTGCTGCAGT < 41bp 1 0.0482855468310524 1 0.0803884565830231 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNX2 ENSG00000205302 CDS Human protein_coding chr5:122154694 chr5:122154677 stopgain 1.000 1 4 hm5C_associated_SNPs_30901 0 0 1 0 1 SNX2 chr5:122154718 5'GT 122154718 Upstream 42bp
chr18 34349247 34349247 1 + T C OV 34349255 + 34349235 34349275 41 TAGTTCCTGGACTATGGGAACTGATGACTCGCCCAATGTCA TAGTTCCTGGACCATGGGAACTGATGACTCGCCCAATGTCA < 41bp 1 0.143002552688334 1 0.0762163400650024 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34349255 chr18:34349247 synonymous SNV . 0 13 hm5C_associated_SNPs_30902 0 0 0 0 1 FHOD3 chr18:34349228 3'AG 34349228 Downstream 20bp
chr12 56214111 56214111 1 + C T OV 56214120 + 56214100 56214140 41 CAGCCTCATTGCTAAGTGTACTGCTGCCGAAGTTGCCCCAG CAGCCTCATTGTTAAGTGTACTGCTGCCGAAGTTGCCCCAG < 41bp 1 0.66383544122111 1 0.168861329555511 experiment 0.672329117557779 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ORMDL2 ENSG00000123353;ENSG00000257390 CDS Human protein_coding chr12:56214120 chr12:56214111 synonymous SNV . 0 12 hm5C_associated_SNPs_30903 0 0 1 0 1 ORMDL2 chr12:56214044 3'AG 56214044 Downstream 68bp
chr12 56214111 56214111 1 + C T OV 56214123 + 56214103 56214143 41 CCTCATTGCTAAGTGTACTGCTGCCGAAGTTGCCCCAGTTC CCTCATTGTTAAGTGTACTGCTGCCGAAGTTGCCCCAGTTC < 41bp 1 0.601419110063823 1 0.206924140453339 experiment 0.797161779872355 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ORMDL2 ENSG00000123353;ENSG00000257390 CDS Human protein_coding chr12:56214123 chr12:56214111 synonymous SNV . 0 9 hm5C_associated_SNPs_30904 0 0 1 0 1 ORMDL2 chr12:56214044 3'AG 56214044 Downstream 68bp
chr6 42975966 42975966 1 + C T OV 42975958 + 42975938 42975978 41 GGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGAG GGTTCATCTACGAGACGGAGCATCACAATGGGATTGCTGAG < 41bp 1 0.286163938499647 1 0.0279779732227325 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975958 chr6:42975966 synonymous SNV . 0 29 hm5C_associated_SNPs_30905 0 0 1 0 2 PPP2R5D chr6:42975939 3'AG 42975939 Downstream 28bp
chr6 42975966 42975966 1 + C T OV 42975958 + 42975938 42975978 41 GGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGAG GGTTCATCTACGAGACGGAGCATCACAATGGGATTGCTGAG < 41bp 1 0.286163938499647 1 0.0279779732227325 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975958 chr6:42975966 synonymous SNV . 0 29 hm5C_associated_SNPs_30905 0 0 1 0 2 PPP2R5D chr6:42975998 5'GT 42975998 Upstream 33bp
chr17 39974695 39974695 1 + G T OV 39974691 + 39974671 39974711 41 TCTGGTTGGCTGATCAAGGGCATGGACCAGGGGCTGCTGGG TCTGGTTGGCTGATCAAGGGCATGTACCAGGGGCTGCTGGG < 41bp 1 0.209977661456764 1 0.111507475376129 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974691 chr17:39974695 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_30906 0 0 1 0 2 FKBP10 chr17:39974634 3'AG 39974634 Downstream 62bp
chr17 39974695 39974695 1 + G T OV 39974691 + 39974671 39974711 41 TCTGGTTGGCTGATCAAGGGCATGGACCAGGGGCTGCTGGG TCTGGTTGGCTGATCAAGGGCATGTACCAGGGGCTGCTGGG < 41bp 1 0.209977661456764 1 0.111507475376129 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974691 chr17:39974695 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_30906 0 0 1 0 2 FKBP10 chr17:39974779 5'GT 39974779 Upstream 85bp
chr17 39974695 39974695 1 + G T OV 39974698 + 39974678 39974718 41 GGCTGATCAAGGGCATGGACCAGGGGCTGCTGGGCATGTGT GGCTGATCAAGGGCATGTACCAGGGGCTGCTGGGCATGTGT < 41bp 1 0.775825302596546 1 0.957520365715027 experiment 0.448349394806908 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974698 chr17:39974695 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_30907 0 0 1 0 2 FKBP10 chr17:39974634 3'AG 39974634 Downstream 62bp
chr17 39974695 39974695 1 + G T OV 39974698 + 39974678 39974718 41 GGCTGATCAAGGGCATGGACCAGGGGCTGCTGGGCATGTGT GGCTGATCAAGGGCATGTACCAGGGGCTGCTGGGCATGTGT < 41bp 1 0.775825302596546 1 0.957520365715027 experiment 0.448349394806908 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974698 chr17:39974695 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_30907 0 0 1 0 2 FKBP10 chr17:39974779 5'GT 39974779 Upstream 85bp
chr17 39974695 39974695 1 + G T OV 39974704 + 39974684 39974724 41 TCAAGGGCATGGACCAGGGGCTGCTGGGCATGTGTCCTGGA TCAAGGGCATGTACCAGGGGCTGCTGGGCATGTGTCCTGGA < 41bp 1 0.222916578001124 1 0.0371689796447754 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974704 chr17:39974695 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_30908 0 0 1 0 2 FKBP10 chr17:39974634 3'AG 39974634 Downstream 62bp
chr17 39974695 39974695 1 + G T OV 39974704 + 39974684 39974724 41 TCAAGGGCATGGACCAGGGGCTGCTGGGCATGTGTCCTGGA TCAAGGGCATGTACCAGGGGCTGCTGGGCATGTGTCCTGGA < 41bp 1 0.222916578001124 1 0.0371689796447754 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974704 chr17:39974695 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_30908 0 0 1 0 2 FKBP10 chr17:39974779 5'GT 39974779 Upstream 85bp
chr17 39974695 39974695 1 + G T OV 39974712 + 39974692 39974732 41 ATGGACCAGGGGCTGCTGGGCATGTGTCCTGGAGAGAGAAG ATGTACCAGGGGCTGCTGGGCATGTGTCCTGGAGAGAGAAG < 41bp 1 0.235546002277816 1 0.287831604480743 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974712 chr17:39974695 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_30909 0 0 1 0 2 FKBP10 chr17:39974634 3'AG 39974634 Downstream 62bp
chr17 39974695 39974695 1 + G T OV 39974712 + 39974692 39974732 41 ATGGACCAGGGGCTGCTGGGCATGTGTCCTGGAGAGAGAAG ATGTACCAGGGGCTGCTGGGCATGTGTCCTGGAGAGAGAAG < 41bp 1 0.235546002277816 1 0.287831604480743 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974712 chr17:39974695 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_30909 0 0 1 0 2 FKBP10 chr17:39974779 5'GT 39974779 Upstream 85bp
chrX 37955473 37955473 1 + G A OV 37955484 + 37955464 37955504 41 TCTGTCCCTGGGGCTTTAGACAAGGTAAGTTGGATGTGGAA TCTGTCCCTAGGGCTTTAGACAAGGTAAGTTGGATGTGGAA < 41bp 1 0.691515826987708 1 0.751859843730927 experiment 0.616968346024585 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37955484 chrX:37955473 nonsynonymous SNV 0.997 2 10 hm5C_associated_SNPs_30910 0 0 0 0 2 SYTL5 chrX:37955387 3'AG 37955387 Downstream 87bp
chrX 37955473 37955473 1 + G A OV 37955484 + 37955464 37955504 41 TCTGTCCCTGGGGCTTTAGACAAGGTAAGTTGGATGTGGAA TCTGTCCCTAGGGCTTTAGACAAGGTAAGTTGGATGTGGAA < 41bp 1 0.691515826987708 1 0.751859843730927 experiment 0.616968346024585 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37955484 chrX:37955473 nonsynonymous SNV 0.997 2 10 hm5C_associated_SNPs_30910 0 0 0 0 2 SYTL5 chrX:37955487 5'GT 37955487 Upstream 15bp
chr16 84035482 84035482 1 + C T OV 84035478 + 84035458 84035498 41 TTCCGGCACGTCAAGGTGGACACACTGAGCCAGCCTGAGGC TTCCGGCACGTCAAGGTGGACACATTGAGCCAGCCTGAGGC < 41bp 1 0.41481834686509 1 0.183225035667419 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NECAB2 ENSG00000103154 CDS Human protein_coding chr16:84035478 chr16:84035482 synonymous SNV . 0 25 hm5C_associated_SNPs_30911 0 0 0 0 2 NECAB2 chr16:84035430 3'AG 84035430 Downstream 53bp
chr16 84035482 84035482 1 + C T OV 84035478 + 84035458 84035498 41 TTCCGGCACGTCAAGGTGGACACACTGAGCCAGCCTGAGGC TTCCGGCACGTCAAGGTGGACACATTGAGCCAGCCTGAGGC < 41bp 1 0.41481834686509 1 0.183225035667419 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NECAB2 ENSG00000103154 CDS Human protein_coding chr16:84035478 chr16:84035482 synonymous SNV . 0 25 hm5C_associated_SNPs_30911 0 0 0 0 2 NECAB2 chr16:84035521 5'GT 84035521 Upstream 40bp
chr2 97464908 97464908 1 + G A OV 97464916 + 97464896 97464936 41 AGTACTACGCCCGCCATTACCTGTACACCCGAAATAAGCCG AGTACTACGCCCACCATTACCTGTACACCCGAAATAAGCCG < 41bp 1 0.531198078321704 1 0.746360063552856 experiment 0.937603843356592 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CNNM4 ENSG00000158158 CDS Human protein_coding chr2:97464916 chr2:97464908 nonsynonymous SNV 0.614 0 13 hm5C_associated_SNPs_30912 0 0 1 0 1 CNNM4 chr2:97464963 5'GT 97464963 Upstream 56bp
chr19 4323380 4323380 1 + G C OV 4323383 + 4323363 4323403 41 ATGCCCGCACCAAACAAGTGCTGCACACTTTCAAGACCAGG ATGCCCGCACCAAACAACTGCTGCACACTTTCAAGACCAGG < 41bp 1 0.348369068626133 1 0.218527227640152 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FSD1 ENSG00000105255 CDS Human protein_coding chr19:4323383 chr19:4323380 nonsynonymous SNV 0.581 0 18 hm5C_associated_SNPs_30913 0 0 1 0 2 FSD1 chr19:4323345 3'AG 4323345 Downstream 36bp
chr19 4323380 4323380 1 + G C OV 4323383 + 4323363 4323403 41 ATGCCCGCACCAAACAAGTGCTGCACACTTTCAAGACCAGG ATGCCCGCACCAAACAACTGCTGCACACTTTCAAGACCAGG < 41bp 1 0.348369068626133 1 0.218527227640152 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FSD1 ENSG00000105255 CDS Human protein_coding chr19:4323383 chr19:4323380 nonsynonymous SNV 0.581 0 18 hm5C_associated_SNPs_30913 0 0 1 0 2 FSD1 chr19:4323433 5'GT 4323433 Upstream 54bp
chr2 232573422 232573422 1 + A G OV 232573427 + 232573407 232573447 41 GTGCCCCACCATGTCAGACGCAGCCGTAGACACCAGCTCCG GTGCCCCACCATGTCGGACGCAGCCGTAGACACCAGCTCCG < 41bp 1 0.666741442809157 1 0.3267542719841 experiment 0.666517114381687 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514;ENSG00000187514 exonic;splicing Human protein_coding chr2:232573427 chr2:232573422 synonymous SNV 0.998 0 16 hm5C_associated_SNPs_30915 0 0 1 0 1 PTMA chr2:232573461 5'GT 232573461 Upstream 40bp
chr2 232573422 232573422 1 + A G OV 232573430 + 232573410 232573450 41 CCCCACCATGTCAGACGCAGCCGTAGACACCAGCTCCGAAA CCCCACCATGTCGGACGCAGCCGTAGACACCAGCTCCGAAA < 41bp 1 0.601209971299281 1 0.270610332489014 experiment 0.797580057401439 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514;ENSG00000187514 exonic;splicing Human protein_coding chr2:232573430 chr2:232573422 synonymous SNV 0.998 0 13 hm5C_associated_SNPs_30916 0 0 1 0 1 PTMA chr2:232573461 5'GT 232573461 Upstream 40bp
chr2 232573422 232573422 1 + A G OV 232573440 + 232573420 232573460 41 TCAGACGCAGCCGTAGACACCAGCTCCGAAATCACCACCAA TCGGACGCAGCCGTAGACACCAGCTCCGAAATCACCACCAA < 41bp 1 0.736889168322625 1 0.395620286464691 experiment 0.52622166335475 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514;ENSG00000187514 exonic;splicing Human protein_coding chr2:232573440 chr2:232573422 synonymous SNV 0.998 0 3 hm5C_associated_SNPs_30917 0 0 1 0 1 PTMA chr2:232573461 5'GT 232573461 Upstream 40bp
chr15 41859592 41859592 1 + C G OV 41859602 + 41859582 41859622 41 GAAGTCCTGGCTGTTGTGGTCCCTGTGCCCCCCTTTACCTG GAAGTCCTGGGTGTTGTGGTCCCTGTGCCCCCCTTTACCTG < 41bp 1 0.274127304844411 1 0.0534572303295135 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41859602 chr15:41859592 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_30918 0 0 0 0 1 TYRO3 chr15:41859558 3'AG 41859558 Downstream 35bp
chr3 107524253 107524253 1 + G T OV 107524266 + 107524246 107524286 41 ATGGACAGCCAAAAGAAATGCCGCAGGCTCCTGTACTTATT ATGGACATCCAAAAGAAATGCCGCAGGCTCCTGTACTTATT < 41bp 1 0.471517580301031 1 0.236049383878708 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BBX ENSG00000114439 CDS Human protein_coding chr3:107524266 chr3:107524253 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_30919 0 0 1 0 1 BBX chr3:107524217 3'AG 107524217 Downstream 37bp
chr1 16199349 16199349 1 + G T OV 16199355 + 16199335 16199375 41 AATTCTTCCCAAGAGGGGATCTGAAGGAGGAGTGGCTGCCT AATTCTTCCCAAGATGGGATCTGAAGGAGGAGTGGCTGCCT < 41bp 1 0.436874254361881 1 0.849797070026398 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16199355 chr1:16199349 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_30920 0 0 1 0 1 SPEN chr1:16199311 3'AG 16199311 Downstream 39bp
chr3 150289799 150289799 1 + G T OV 150289790 + 150289770 150289810 41 AGTTTGGAATTCTAGTTCTACTGAGTTTTGTGCTGTATATG AGTTTGGAATTCTAGTTCTACTGAGTTTTTTGCTGTATATG < 41bp 1 0.526901962200554 1 0.1360764503479 experiment 0.946196075598892 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF2A ENSG00000144895 CDS Human protein_coding chr3:150289790 chr3:150289799 nonsynonymous SNV 0.999 4 30 hm5C_associated_SNPs_30921 0 0 1 0 1 EIF2A chr3:150289745 3'AG 150289745 Downstream 55bp
chr2 46611660 46611660 1 + G C OV 46611654 + 46611634 46611674 41 AACCCTTCTTTCAGGCATGGCAAGCCGGCTGCTCGGGCCCT AACCCTTCTTTCAGGCATGGCAAGCCCGCTGCTCGGGCCCT < 41bp 1 0.174331303349905 1 0.319557785987854 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46611654 chr2:46611660 nonsynonymous SNV 0.958 2 27 hm5C_associated_SNPs_30922 0 0 1 0 1 EPAS1 chr2:46611648 3'AG 46611648 Downstream 13bp
chr2 46611661 46611661 1 + G C OV 46611654 + 46611634 46611674 41 AACCCTTCTTTCAGGCATGGCAAGCCGGCTGCTCGGGCCCT AACCCTTCTTTCAGGCATGGCAAGCCGCCTGCTCGGGCCCT < 41bp 1 0.19054115370828 1 0.490718930959702 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46611654 chr2:46611661 synonymous SNV . 0 28 hm5C_associated_SNPs_30923 0 0 1 0 1 EPAS1 chr2:46611648 3'AG 46611648 Downstream 14bp
chr16 2489417 2489417 1 + A T OV 2489428 + 2489408 2489448 41 GGATGTCTGACCAGCTCCTACCTCCTCTGGGAAAGCGACAG GGATGTCTGTCCAGCTCCTACCTCCTCTGGGAAAGCGACAG < 41bp 1 0.033132976713371 1 0.0552080273628235 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCNF ENSG00000162063 CDS Human protein_coding chr16:2489428 chr16:2489417 nonsynonymous SNV 0.134 0 10 hm5C_associated_SNPs_30924 0 0 1 0 2 CCNF chr16:2489354 3'AG 2489354 Downstream 64bp
chr16 2489417 2489417 1 + A T OV 2489428 + 2489408 2489448 41 GGATGTCTGACCAGCTCCTACCTCCTCTGGGAAAGCGACAG GGATGTCTGTCCAGCTCCTACCTCCTCTGGGAAAGCGACAG < 41bp 1 0.033132976713371 1 0.0552080273628235 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCNF ENSG00000162063 CDS Human protein_coding chr16:2489428 chr16:2489417 nonsynonymous SNV 0.134 0 10 hm5C_associated_SNPs_30924 0 0 1 0 2 CCNF chr16:2489458 5'GT 2489458 Upstream 42bp
chr7 150769178 150769178 1 + G A OV 150769166 + 150769146 150769186 41 TCCCGCTTCACCCAGGAGATCTTCGCCTTCTTGATCTCACT TCCCGCTTCACCCAGGAGATCTTCGCCTTCTTAATCTCACT < 41bp 1 0.0611558556290791 1 0.0546144843101501 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150769166 chr7:150769178 synonymous SNV . 0 33 hm5C_associated_SNPs_30925 0 0 1 0 1 SLC4A2 chr7:150769223 5'GT 150769223 Upstream 46bp
chr2 36739482 36739482 1 + C T OV 36739473 + 36739453 36739493 41 AAATGTCCAGAGCTCTCATGCAGTAAGATCTGCCCCTTGGG AAATGTCCAGAGCTCTCATGCAGTAAGATTTGCCCCTTGGG < 41bp 1 0.409825454026642 1 0.326364398002625 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36739473 chr2:36739482 synonymous SNV . 0 30 hm5C_associated_SNPs_30927 0 0 1 0 2 CRIM1 chr2:36739416 3'AG 36739416 Downstream 67bp
chr2 36739482 36739482 1 + C T OV 36739473 + 36739453 36739493 41 AAATGTCCAGAGCTCTCATGCAGTAAGATCTGCCCCTTGGG AAATGTCCAGAGCTCTCATGCAGTAAGATTTGCCCCTTGGG < 41bp 1 0.409825454026642 1 0.326364398002625 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36739473 chr2:36739482 synonymous SNV . 0 30 hm5C_associated_SNPs_30927 0 0 1 0 2 CRIM1 chr2:36739537 5'GT 36739537 Upstream 56bp
chr16 70163007 70163007 1 + A G OV 70163015 + 70162995 70163035 41 CTTGCCCTGGCAAGTGCTGCCTCCCAAAATGGTGAGCAGGT CTTGCCCTGGCAGGTGCTGCCTCCCAAAATGGTGAGCAGGT < 41bp 1 0.240007350092015 1 0.3267742395401 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70163015 chr16:70163007 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_30928 0 0 0 0 1 PDPR chr16:70163025 5'GT 70163025 Upstream 19bp
chr18 29116349 29116349 1 + A T OV 29116350 + 29116330 29116370 41 GTTTCTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAA GTTTCTCCGTCATTGACAATCCACCTGGCATGGCAGAAAAA < 41bp 1 0.143457195902136 1 0.246951103210449 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116350 chr18:29116349 nonsynonymous SNV 0.452 1 20 hm5C_associated_SNPs_30929 0 0 1 0 1 DSG2 chr18:29116392 5'GT 29116392 Upstream 44bp
chr18 29116349 29116349 1 + A T OV 29116354 + 29116334 29116374 41 CTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAATGGA CTCCGTCATTGACAATCCACCTGGCATGGCAGAAAAATGGA < 41bp 1 0.433585336990598 1 0.104413658380508 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116354 chr18:29116349 nonsynonymous SNV 0.452 1 16 hm5C_associated_SNPs_30930 0 0 1 0 1 DSG2 chr18:29116392 5'GT 29116392 Upstream 44bp
chr18 29116349 29116349 1 + A T OV 29116363 + 29116343 29116383 41 TGACAAACCACCTGGCATGGCAGAAAAATGGAAAATAGCAC TGACAATCCACCTGGCATGGCAGAAAAATGGAAAATAGCAC < 41bp 1 0.486737660916388 1 0.313675701618195 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116363 chr18:29116349 nonsynonymous SNV 0.452 1 7 hm5C_associated_SNPs_30931 0 0 1 0 1 DSG2 chr18:29116392 5'GT 29116392 Upstream 44bp
chr19 13049527 13049527 1 + C T OV 13049544 + 13049524 13049564 41 CTCCTCGGCCTGGCCGTCGCCGAGCCTGCCGTCTACTTCAA CTCTTCGGCCTGGCCGTCGCCGAGCCTGCCGTCTACTTCAA < 41bp 1 0.668092368674405 1 0.693444848060608 experiment 0.66381526265119 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13049544 chr19:13049527 nonsynonymous SNV 0.975 0 4 hm5C_associated_SNPs_30932 0 0 1 0 1 CALR chr19:13049584 5'GT 13049584 Upstream 58bp
chr5 135369461 135369461 1 + G T OV 135369452 + 135369432 135369472 41 TCTGCTGCTTTTGTTTTCAGCCCCAACGTGTGTGCTGTGCA TCTGCTGCTTTTGTTTTCAGCCCCAACGTTTGTGCTGTGCA < 41bp 1 0.150858079290026 1 0.328737080097198 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFBI ENSG00000120708 CDS Human protein_coding chr5:135369452 chr5:135369461 synonymous SNV . 0 30 hm5C_associated_SNPs_30933 0 0 1 0 2 TGFBI chr5:135369452 3'AG 135369452 Downstream 10bp
chr5 135369461 135369461 1 + G T OV 135369452 + 135369432 135369472 41 TCTGCTGCTTTTGTTTTCAGCCCCAACGTGTGTGCTGTGCA TCTGCTGCTTTTGTTTTCAGCCCCAACGTTTGTGCTGTGCA < 41bp 1 0.150858079290026 1 0.328737080097198 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFBI ENSG00000120708 CDS Human protein_coding chr5:135369452 chr5:135369461 synonymous SNV . 0 30 hm5C_associated_SNPs_30933 0 0 1 0 2 TGFBI chr5:135369550 5'GT 135369550 Upstream 90bp
chr5 135369461 135369461 1 + G T OV 135369453 + 135369433 135369473 41 CTGCTGCTTTTGTTTTCAGCCCCAACGTGTGTGCTGTGCAG CTGCTGCTTTTGTTTTCAGCCCCAACGTTTGTGCTGTGCAG < 41bp 1 0.179815909882583 1 0.101566195487976 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFBI ENSG00000120708 CDS Human protein_coding chr5:135369453 chr5:135369461 synonymous SNV . 0 29 hm5C_associated_SNPs_30934 0 0 1 0 2 TGFBI chr5:135369452 3'AG 135369452 Downstream 10bp
chr5 135369461 135369461 1 + G T OV 135369453 + 135369433 135369473 41 CTGCTGCTTTTGTTTTCAGCCCCAACGTGTGTGCTGTGCAG CTGCTGCTTTTGTTTTCAGCCCCAACGTTTGTGCTGTGCAG < 41bp 1 0.179815909882583 1 0.101566195487976 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFBI ENSG00000120708 CDS Human protein_coding chr5:135369453 chr5:135369461 synonymous SNV . 0 29 hm5C_associated_SNPs_30934 0 0 1 0 2 TGFBI chr5:135369550 5'GT 135369550 Upstream 90bp
chr5 135369461 135369461 1 + G T OV 135369454 + 135369434 135369474 41 TGCTGCTTTTGTTTTCAGCCCCAACGTGTGTGCTGTGCAGA TGCTGCTTTTGTTTTCAGCCCCAACGTTTGTGCTGTGCAGA < 41bp 1 0.0231095399921386 1 0.121606141328812 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFBI ENSG00000120708 CDS Human protein_coding chr5:135369454 chr5:135369461 synonymous SNV . 0 28 hm5C_associated_SNPs_30935 0 0 1 0 2 TGFBI chr5:135369452 3'AG 135369452 Downstream 10bp
chr5 135369461 135369461 1 + G T OV 135369454 + 135369434 135369474 41 TGCTGCTTTTGTTTTCAGCCCCAACGTGTGTGCTGTGCAGA TGCTGCTTTTGTTTTCAGCCCCAACGTTTGTGCTGTGCAGA < 41bp 1 0.0231095399921386 1 0.121606141328812 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFBI ENSG00000120708 CDS Human protein_coding chr5:135369454 chr5:135369461 synonymous SNV . 0 28 hm5C_associated_SNPs_30935 0 0 1 0 2 TGFBI chr5:135369550 5'GT 135369550 Upstream 90bp
chr5 135369461 135369461 1 + G T OV 135369455 + 135369435 135369475 41 GCTGCTTTTGTTTTCAGCCCCAACGTGTGTGCTGTGCAGAA GCTGCTTTTGTTTTCAGCCCCAACGTTTGTGCTGTGCAGAA < 41bp 1 0.302309874412558 1 0.11550384759903 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFBI ENSG00000120708 CDS Human protein_coding chr5:135369455 chr5:135369461 synonymous SNV . 0 27 hm5C_associated_SNPs_30936 0 0 1 0 2 TGFBI chr5:135369452 3'AG 135369452 Downstream 10bp
chr5 135369461 135369461 1 + G T OV 135369455 + 135369435 135369475 41 GCTGCTTTTGTTTTCAGCCCCAACGTGTGTGCTGTGCAGAA GCTGCTTTTGTTTTCAGCCCCAACGTTTGTGCTGTGCAGAA < 41bp 1 0.302309874412558 1 0.11550384759903 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFBI ENSG00000120708 CDS Human protein_coding chr5:135369455 chr5:135369461 synonymous SNV . 0 27 hm5C_associated_SNPs_30936 0 0 1 0 2 TGFBI chr5:135369550 5'GT 135369550 Upstream 90bp
chr3 9859419 9859419 1 + G T OV 9859427 + 9859407 9859447 41 TGCCTGGGGGCTGAGGATGACAAAAAAGCCTTCATAGGTAA TGCCTGGGGGCTTAGGATGACAAAAAAGCCTTCATAGGTAA < 41bp 1 0.534851978567861 1 0.559752702713013 experiment 0.930296042864277 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARPC4-TTLL3;TTLL3 ENSG00000214021;ENSG00000250151 CDS Human other chr3:9859427 chr3:9859419 stopgain 1.000 0 13 hm5C_associated_SNPs_30937 0 0 1 0 1 ARPC4-TTLL3;TTLL3 chr3:9859443 5'GT 9859443 Upstream 25bp
chr5 147819268 147819268 1 + G T OV 147819249 + 147819229 147819269 41 AGCAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGT AGCAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTTT < 41bp 1 0.24677964792758 1 0.035656750202179 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819249 chr5:147819268 nonsynonymous SNV 0.997 2 40 hm5C_associated_SNPs_30938 0 0 1 0 2 FBXO38 chr5:147819210 3'AG 147819210 Downstream 59bp
chr5 147819268 147819268 1 + G T OV 147819249 + 147819229 147819269 41 AGCAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGT AGCAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTTT < 41bp 1 0.24677964792758 1 0.035656750202179 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819249 chr5:147819268 nonsynonymous SNV 0.997 2 40 hm5C_associated_SNPs_30938 0 0 1 0 2 FBXO38 chr5:147819355 5'GT 147819355 Upstream 88bp
chr5 147819268 147819268 1 + G T OV 147819251 + 147819231 147819271 41 CAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGTAT CAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTTTAT < 41bp 1 0.130836588733346 1 0.0277892649173737 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819251 chr5:147819268 nonsynonymous SNV 0.997 2 38 hm5C_associated_SNPs_30939 0 0 1 0 2 FBXO38 chr5:147819210 3'AG 147819210 Downstream 59bp
chr5 147819268 147819268 1 + G T OV 147819251 + 147819231 147819271 41 CAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGTAT CAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTTTAT < 41bp 1 0.130836588733346 1 0.0277892649173737 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819251 chr5:147819268 nonsynonymous SNV 0.997 2 38 hm5C_associated_SNPs_30939 0 0 1 0 2 FBXO38 chr5:147819355 5'GT 147819355 Upstream 88bp
chr5 147819268 147819268 1 + G T OV 147819256 + 147819236 147819276 41 GCTATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCC GCTATTTAGTGGTCCCTACCCCTATCACATCTTTATTATCC < 41bp 1 0.08463206737825 1 0.089014858007431 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819256 chr5:147819268 nonsynonymous SNV 0.997 2 33 hm5C_associated_SNPs_30940 0 0 1 0 2 FBXO38 chr5:147819210 3'AG 147819210 Downstream 59bp
chr5 147819268 147819268 1 + G T OV 147819256 + 147819236 147819276 41 GCTATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCC GCTATTTAGTGGTCCCTACCCCTATCACATCTTTATTATCC < 41bp 1 0.08463206737825 1 0.089014858007431 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819256 chr5:147819268 nonsynonymous SNV 0.997 2 33 hm5C_associated_SNPs_30940 0 0 1 0 2 FBXO38 chr5:147819355 5'GT 147819355 Upstream 88bp
chr5 147819268 147819268 1 + G T OV 147819257 + 147819237 147819277 41 CTATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCCA CTATTTAGTGGTCCCTACCCCTATCACATCTTTATTATCCA < 41bp 1 0.0832039829415712 1 0.340149104595184 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819257 chr5:147819268 nonsynonymous SNV 0.997 2 32 hm5C_associated_SNPs_30941 0 0 1 0 2 FBXO38 chr5:147819210 3'AG 147819210 Downstream 59bp
chr5 147819268 147819268 1 + G T OV 147819257 + 147819237 147819277 41 CTATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCCA CTATTTAGTGGTCCCTACCCCTATCACATCTTTATTATCCA < 41bp 1 0.0832039829415712 1 0.340149104595184 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819257 chr5:147819268 nonsynonymous SNV 0.997 2 32 hm5C_associated_SNPs_30941 0 0 1 0 2 FBXO38 chr5:147819355 5'GT 147819355 Upstream 88bp
chr10 24817002 24817002 1 + C A OV 24816988 + 24816968 24817008 41 CAATACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTG CAATACCAAATCTGGAGATGCCGCCAGCCACAGGACCACTG < 41bp 1 0.125301997146103 1 0.167505383491516 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816988 chr10:24817002 synonymous SNV . 0 35 hm5C_associated_SNPs_30942 0 0 1 0 1 KIAA1217 chr10:24817048 5'GT 24817048 Upstream 47bp
chr10 24817002 24817002 1 + C A OV 24816992 + 24816972 24817012 41 ACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTGCCAA ACCAAATCTGGAGATGCCGCCAGCCACAGGACCACTGCCAA < 41bp 1 0.229444099854574 1 0.701178073883057 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816992 chr10:24817002 synonymous SNV . 0 31 hm5C_associated_SNPs_30943 0 0 1 0 1 KIAA1217 chr10:24817048 5'GT 24817048 Upstream 47bp
chrX 48759276 48759276 1 + C A OV 48759267 + 48759247 48759287 41 TCCTGGCTCTCCCCACATGACCCCAACTCCGTGGTTACCAA TCCTGGCTCTCCCCACATGACCCCAACTCAGTGGTTACCAA < 41bp 1 0.684284229293679 1 0.0465203523635864 experiment 0.631431541412642 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759267 chrX:48759276 synonymous SNV . 0 30 hm5C_associated_SNPs_30944 0 0 1 0 2 PQBP1 chrX:48759207 3'AG 48759207 Downstream 70bp
chrX 48759276 48759276 1 + C A OV 48759267 + 48759247 48759287 41 TCCTGGCTCTCCCCACATGACCCCAACTCCGTGGTTACCAA TCCTGGCTCTCCCCACATGACCCCAACTCAGTGGTTACCAA < 41bp 1 0.684284229293679 1 0.0465203523635864 experiment 0.631431541412642 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759267 chrX:48759276 synonymous SNV . 0 30 hm5C_associated_SNPs_30944 0 0 1 0 2 PQBP1 chrX:48759319 5'GT 48759319 Upstream 44bp
chr1 39751390 39751390 1 + C T OV 39751378 + 39751358 39751398 41 TCAGGCAGCTGCAGGTGGATCTCCAGATCCTGCGGGATGAG TCAGGCAGCTGCAGGTGGATCTCCAGATCCTGTGGGATGAG < 41bp 1 0.478065328560372 1 0.890841662883759 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39751378 chr1:39751390 nonsynonymous SNV 0.995 4 33 hm5C_associated_SNPs_30945 0 0 1 0 1 MACF1 chr1:39751430 5'GT 39751430 Upstream 41bp
chr11 994220 994220 1 + C G OV 994214 + 994194 994234 41 TGTGGACGTGAACGGGGGTCCTGAGCCTGCCCCAGCCAGTA TGTGGACGTGAACGGGGGTCCTGAGCGTGCCCCAGCCAGTA < 41bp 1 0.522866514941424 1 0.270213663578033 experiment 0.954266970117153 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:994214 chr11:994220 nonsynonymous SNV 0.006 1 27 hm5C_associated_SNPs_30946 0 0 1 0 1 AP2A2 chr11:994245 5'GT 994245 Upstream 26bp
chr3 62189578 62189578 1 + C T OV 62189585 + 62189565 62189605 41 AGCCTATGTCCCGCGGGGACCGATTTTCTGAAGACAGCAGA AGCCTATGTCCCGTGGGGACCGATTTTCTGAAGACAGCAGA < 41bp 1 0.109954461718893 1 0.110505372285843 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:62189585 chr3:62189578 synonymous SNV . 0 14 hm5C_associated_SNPs_30947 0 0 0 0 1 PTPRG chr3:62189624 5'GT 62189624 Upstream 47bp
chr17 40817779 40817779 1 + G C OV 40817780 + 40817760 40817800 41 TCATCGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC TCATCGGCCTCATCGCCTCCCTCATTCCCACCCCACGGCTC < 41bp 1 0.38445258451953 1 0.0462374687194824 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817780 chr17:40817779 synonymous SNV . 0 20 hm5C_associated_SNPs_30952 0 0 0 0 2 TUBG2 chr17:40817696 3'AG 40817696 Downstream 84bp
chr17 40817779 40817779 1 + G C OV 40817780 + 40817760 40817800 41 TCATCGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC TCATCGGCCTCATCGCCTCCCTCATTCCCACCCCACGGCTC < 41bp 1 0.38445258451953 1 0.0462374687194824 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817780 chr17:40817779 synonymous SNV . 0 20 hm5C_associated_SNPs_30952 0 0 0 0 2 TUBG2 chr17:40817845 5'GT 40817845 Upstream 67bp
chrX 107930810 107930810 1 + C T OV 107930815 + 107930795 107930835 41 GGATTTCTTATTACACGCCACAGCCAGACAACGGATGCACC GGATTTCTTATTACATGCCACAGCCAGACAACGGATGCACC < 41bp 1 0.073821371934543 1 0.173624247312546 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107930815 chrX:107930810 nonsynonymous SNV 1.000 5 16 hm5C_associated_SNPs_30953 0 0 0 0 1 COL4A5 chrX:107930712 3'AG 107930712 Downstream 99bp
chr19 18966734 18966734 1 + G A OV 18966735 + 18966715 18966755 41 TGCCCCAATGGTGTTGCAGGCCGGTGCTGGTGTGTGCTCCG TGCCCCAATGGTGTTGCAGACCGGTGCTGGTGTGTGCTCCG < 41bp 1 0.36107648923401 1 0.337171137332916 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18966735 chr19:18966734 synonymous SNV . 0 20 hm5C_associated_SNPs_30954 0 0 1 0 1 UPF1 chr19:18966734 3'AG 18966734 Downstream 1bp
chr3 40553904 40553904 1 + A T OV 40553898 + 40553878 40553918 41 TTTCTCCCTGGGCAGCATTCCCATTCACCACGCCTGTTCTG TTTCTCCCTGGGCAGCATTCCCATTCTCCACGCCTGTTCTG < 41bp 1 0.12455900461437 1 0.0795082449913025 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF620 ENSG00000177842 CDS Human protein_coding chr3:40553898 chr3:40553904 nonsynonymous SNV 0.459 0 27 hm5C_associated_SNPs_30955 0 0 0 0 1 ZNF620 chr3:40553893 3'AG 40553893 Downstream 12bp
chr14 61285485 61285485 1 + G C OV 61285479 + 61285459 61285499 41 TTGCTCTGCTTTTGGCTCAGCATAAAGATAGATCTACCCAA TTGCTCTGCTTTTGGCTCAGCATAAACATAGATCTACCCAA < 41bp 1 0.32888527514544 1 0.169232934713364 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61285479 chr14:61285485 nonsynonymous SNV 0.954 1 27 hm5C_associated_SNPs_30956 0 0 1 0 2 MNAT1 chr14:61285440 3'AG 61285440 Downstream 46bp
chr14 61285485 61285485 1 + G C OV 61285479 + 61285459 61285499 41 TTGCTCTGCTTTTGGCTCAGCATAAAGATAGATCTACCCAA TTGCTCTGCTTTTGGCTCAGCATAAACATAGATCTACCCAA < 41bp 1 0.32888527514544 1 0.169232934713364 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61285479 chr14:61285485 nonsynonymous SNV 0.954 1 27 hm5C_associated_SNPs_30956 0 0 1 0 2 MNAT1 chr14:61285565 5'GT 61285565 Upstream 81bp
chr19 36593926 36593926 1 + G A OV 36593911 + 36593891 36593931 41 TGAAGTCTCCAGAGGTCAAGCTCATGGACCGAGGCGGAAGC TGAAGTCTCCAGAGGTCAAGCTCATGGACCGAGGCAGAAGC < 41bp 1 0.288642916372472 1 0.172226279973984 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36593911 chr19:36593926 nonsynonymous SNV 0.017 1 36 hm5C_associated_SNPs_30957 0 0 1 0 2 WDR62 chr19:36593850 3'AG 36593850 Downstream 77bp
chr19 36593926 36593926 1 + G A OV 36593911 + 36593891 36593931 41 TGAAGTCTCCAGAGGTCAAGCTCATGGACCGAGGCGGAAGC TGAAGTCTCCAGAGGTCAAGCTCATGGACCGAGGCAGAAGC < 41bp 1 0.288642916372472 1 0.172226279973984 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36593911 chr19:36593926 nonsynonymous SNV 0.017 1 36 hm5C_associated_SNPs_30957 0 0 1 0 2 WDR62 chr19:36593976 5'GT 36593976 Upstream 51bp
chr19 36593926 36593926 1 + G A OV 36593920 + 36593900 36593940 41 CAGAGGTCAAGCTCATGGACCGAGGCGGAAGCCAGCCCAGA CAGAGGTCAAGCTCATGGACCGAGGCAGAAGCCAGCCCAGA < 41bp 1 0.446477514852183 1 0.86842006444931 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36593920 chr19:36593926 nonsynonymous SNV 0.017 1 27 hm5C_associated_SNPs_30958 0 0 1 0 2 WDR62 chr19:36593850 3'AG 36593850 Downstream 77bp
chr19 36593926 36593926 1 + G A OV 36593920 + 36593900 36593940 41 CAGAGGTCAAGCTCATGGACCGAGGCGGAAGCCAGCCCAGA CAGAGGTCAAGCTCATGGACCGAGGCAGAAGCCAGCCCAGA < 41bp 1 0.446477514852183 1 0.86842006444931 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36593920 chr19:36593926 nonsynonymous SNV 0.017 1 27 hm5C_associated_SNPs_30958 0 0 1 0 2 WDR62 chr19:36593976 5'GT 36593976 Upstream 51bp
chr1 162745452 162745452 1 + C A OV 162745469 + 162745449 162745489 41 TTTCTTAAGGAGATAAAGATCATGTCTCGGCTCAAGGACCC TTTATTAAGGAGATAAAGATCATGTCTCGGCTCAAGGACCC < 41bp 1 0.264032924390654 1 0.109387457370758 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162745469 chr1:162745452 nonsynonymous SNV 1.000 5 4 hm5C_associated_SNPs_30959 0 0 0 0 1 DDR2 chr1:162745442 3'AG 162745442 Downstream 11bp
chr6 31602076 31602076 1 + C A OV 31602058 + 31602038 31602078 41 CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAG CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTAAG < 41bp 1 0.469263608927693 1 0.291495233774185 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602058 chr6:31602076 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_30961 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 64bp
chr6 31602076 31602076 1 + C A OV 31602058 + 31602038 31602078 41 CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAG CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTAAG < 41bp 1 0.469263608927693 1 0.291495233774185 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602058 chr6:31602076 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_30961 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 67bp
chr6 31602076 31602076 1 + C A OV 31602059 + 31602039 31602079 41 TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGG TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTAAGG < 41bp 1 0.504686154582552 1 0.852639973163605 experiment 0.990627690834895 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602059 chr6:31602076 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_30962 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 64bp
chr6 31602076 31602076 1 + C A OV 31602059 + 31602039 31602079 41 TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGG TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTAAGG < 41bp 1 0.504686154582552 1 0.852639973163605 experiment 0.990627690834895 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602059 chr6:31602076 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_30962 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 67bp
chr6 31602076 31602076 1 + C A OV 31602066 + 31602046 31602086 41 TTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTC TTGGGCTCTAAGCCTGAGGGCCCAGGCCCTAAGGCAGAGTC < 41bp 1 0.247489713136818 1 0.454886317253113 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602066 chr6:31602076 nonsynonymous SNV 1.000 0 31 hm5C_associated_SNPs_30963 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 64bp
chr6 31602076 31602076 1 + C A OV 31602066 + 31602046 31602086 41 TTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTC TTGGGCTCTAAGCCTGAGGGCCCAGGCCCTAAGGCAGAGTC < 41bp 1 0.247489713136818 1 0.454886317253113 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602066 chr6:31602076 nonsynonymous SNV 1.000 0 31 hm5C_associated_SNPs_30963 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 67bp
chr6 31602076 31602076 1 + C A OV 31602072 + 31602052 31602092 41 TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGA TCTAAGCCTGAGGGCCCAGGCCCTAAGGCAGAGTCCAGAGA < 41bp 1 0.336524479103029 1 0.0827689170837402 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602072 chr6:31602076 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_30964 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 64bp
chr6 31602076 31602076 1 + C A OV 31602072 + 31602052 31602092 41 TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGA TCTAAGCCTGAGGGCCCAGGCCCTAAGGCAGAGTCCAGAGA < 41bp 1 0.336524479103029 1 0.0827689170837402 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602072 chr6:31602076 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_30964 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 67bp
chr6 31602076 31602076 1 + C A OV 31602073 + 31602053 31602093 41 CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGAT CTAAGCCTGAGGGCCCAGGCCCTAAGGCAGAGTCCAGAGAT < 41bp 1 0.262771829147492 1 0.181120455265045 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602073 chr6:31602076 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_30965 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 64bp
chr6 31602076 31602076 1 + C A OV 31602073 + 31602053 31602093 41 CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGAT CTAAGCCTGAGGGCCCAGGCCCTAAGGCAGAGTCCAGAGAT < 41bp 1 0.262771829147492 1 0.181120455265045 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602073 chr6:31602076 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_30965 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 67bp
chr6 31602076 31602076 1 + C A OV 31602074 + 31602054 31602094 41 TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATA TAAGCCTGAGGGCCCAGGCCCTAAGGCAGAGTCCAGAGATA < 41bp 1 0.326431991784121 1 0.16384094953537 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602074 chr6:31602076 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_30966 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 64bp
chr6 31602076 31602076 1 + C A OV 31602074 + 31602054 31602094 41 TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATA TAAGCCTGAGGGCCCAGGCCCTAAGGCAGAGTCCAGAGATA < 41bp 1 0.326431991784121 1 0.16384094953537 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602074 chr6:31602076 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_30966 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 67bp
chr6 31602076 31602076 1 + C A OV 31602080 + 31602060 31602100 41 TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCA TGAGGGCCCAGGCCCTAAGGCAGAGTCCAGAGATACAGGCA < 41bp 1 0.431297428685909 1 0.701267123222351 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602080 chr6:31602076 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_30967 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 64bp
chr6 31602076 31602076 1 + C A OV 31602080 + 31602060 31602100 41 TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCA TGAGGGCCCAGGCCCTAAGGCAGAGTCCAGAGATACAGGCA < 41bp 1 0.431297428685909 1 0.701267123222351 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602080 chr6:31602076 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_30967 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 67bp
chr7 128486906 128486906 1 + T G OV 128486898 + 128486878 128486918 41 GGTAGCTGCACCGTGGAGTACATCCCCTTCACTCCTGGAGA GGTAGCTGCACCGTGGAGTACATCCCCTGCACTCCTGGAGA < 41bp 1 0.0481506472414595 1 0.0455867946147919 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486898 chr7:128486906 nonsynonymous SNV 0.996 4 29 hm5C_associated_SNPs_30968 0 0 0 0 1 FLNC chr7:128486959 5'GT 128486959 Upstream 54bp
chr15 64429075 64429075 1 + G A OV 64429070 + 64429050 64429090 41 TGTCTCCTAGAAAGAGAAATCCAAGGACTTCAAGAACCACG TGTCTCCTAGAAAGAGAAATCCAAGAACTTCAAGAACCACG < 41bp 1 0.115516452442719 1 0.353373736143112 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64429070 chr15:64429075 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_30969 0 0 1 0 2 SNX1 chr15:64429060 3'AG 64429060 Downstream 16bp
chr15 64429075 64429075 1 + G A OV 64429070 + 64429050 64429090 41 TGTCTCCTAGAAAGAGAAATCCAAGGACTTCAAGAACCACG TGTCTCCTAGAAAGAGAAATCCAAGAACTTCAAGAACCACG < 41bp 1 0.115516452442719 1 0.353373736143112 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64429070 chr15:64429075 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_30969 0 0 1 0 2 SNX1 chr15:64429131 5'GT 64429131 Upstream 57bp
chr19 39944005 39944005 1 + G T OV 39944021 + 39944001 39944041 41 CGAAGAGCGGCGGAGTGCAGCGGGCAGTGAGAAAGAAGAAG CGAATAGCGGCGGAGTGCAGCGGGCAGTGAGAAAGAAGAAG < 41bp 1 0.579219037987388 1 0.84163111448288 experiment 0.841561924025224 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944021 chr19:39944005 stopgain 0.945 0 5 hm5C_associated_SNPs_30970 0 0 1 0 1 SUPT5H chr19:39943996 3'AG 39943996 Downstream 10bp
chr19 39944005 39944005 1 + G T OV 39944025 + 39944005 39944045 41 GAGCGGCGGAGTGCAGCGGGCAGTGAGAAAGAAGAAGAGCC TAGCGGCGGAGTGCAGCGGGCAGTGAGAAAGAAGAAGAGCC < 41bp 1 0.320803606873993 1 0.413842231035233 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944025 chr19:39944005 stopgain 0.945 0 1 hm5C_associated_SNPs_30971 0 0 1 0 1 SUPT5H chr19:39943996 3'AG 39943996 Downstream 10bp
chr6 31595940 31595940 1 + G T OV 31595942 + 31595922 31595962 41 TACTCCTACTCCAGGTGTGGCTGCGGCTCCCACTCTGGTGA TACTCCTACTCCAGGTGTTGCTGCGGCTCCCACTCTGGTGA < 41bp 1 0.593023083565708 1 0.223287135362625 experiment 0.813953832868585 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31595942 chr6:31595940 synonymous SNV . 0 19 hm5C_associated_SNPs_30972 0 0 1 0 1 PRRC2A chr6:31596016 5'GT 31596016 Upstream 77bp
chr16 57685246 57685246 1 + G T OV 57685240 + 57685220 57685260 41 TCGAGAACTCCGAAGAGGCCCTCACAGTCCATGCCCCTTTC TCGAGAACTCCGAAGAGGCCCTCACATTCCATGCCCCTTTC < 41bp 1 0.344945891176713 1 0.048089325428009 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRG1 ENSG00000205336 CDS Human protein_coding chr16:57685240 chr16:57685246 nonsynonymous SNV 0.022 1 27 hm5C_associated_SNPs_30973 0 0 1 0 1 ADGRG1 chr16:57685155 3'AG 57685155 Downstream 92bp
chr8 70551056 70551056 1 + T C OV 70551038 + 70551018 70551058 41 CACGTACAACTAATGGAGCTCAGAAGCTGTCAAGGATATAA CACGTACAACTAATGGAGCTCAGAAGCTGTCAAGGATACAA < 41bp 1 0.534507550301273 1 0.39259672164917 experiment 0.930984899397455 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SULF1 ENSG00000137573 CDS Human protein_coding chr8:70551038 chr8:70551056 synonymous SNV . 0 39 hm5C_associated_SNPs_30974 0 0 0 0 2 SULF1 chr8:70550970 3'AG 70550970 Downstream 87bp
chr8 70551056 70551056 1 + T C OV 70551038 + 70551018 70551058 41 CACGTACAACTAATGGAGCTCAGAAGCTGTCAAGGATATAA CACGTACAACTAATGGAGCTCAGAAGCTGTCAAGGATACAA < 41bp 1 0.534507550301273 1 0.39259672164917 experiment 0.930984899397455 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SULF1 ENSG00000137573 CDS Human protein_coding chr8:70551038 chr8:70551056 synonymous SNV . 0 39 hm5C_associated_SNPs_30974 0 0 0 0 2 SULF1 chr8:70551093 5'GT 70551093 Upstream 38bp
chr15 91448687 91448687 1 + G A OV 91448697 + 91448677 91448717 41 CCATCTCCCCGCAGGACTGCCAGTTTGCTTTGGGGGGCCGG CCATCTCCCCACAGGACTGCCAGTTTGCTTTGGGGGGCCGG < 41bp 1 0.223518316311541 1 0.116249591112137 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91448697 chr15:91448687 synonymous SNV . 0 11 hm5C_associated_SNPs_30976 0 0 1 0 1 MAN2A2 chr15:91448738 5'GT 91448738 Upstream 52bp
chr1 28099860 28099860 1 + C T OV 28099858 + 28099838 28099878 41 ACATGTACCGGAACCCGGGGCCCTCGGGGCCCCAGCTCCGG ACATGTACCGGAACCCGGGGCCTTCGGGGCCCCAGCTCCGG < 41bp 1 0.0470299279662676 1 0.129690378904343 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STX12 ENSG00000117758 CDS Human protein_coding chr1:28099858 chr1:28099860 synonymous SNV . 0 23 hm5C_associated_SNPs_30977 0 0 1 0 1 STX12 chr1:28099936 5'GT 28099936 Upstream 77bp
chr1 28099860 28099860 1 + C T OV 28099859 + 28099839 28099879 41 CATGTACCGGAACCCGGGGCCCTCGGGGCCCCAGCTCCGGG CATGTACCGGAACCCGGGGCCTTCGGGGCCCCAGCTCCGGG < 41bp 1 0.51206577803584 1 0.379286348819733 experiment 0.975868443928321 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STX12 ENSG00000117758 CDS Human protein_coding chr1:28099859 chr1:28099860 synonymous SNV . 0 22 hm5C_associated_SNPs_30978 0 0 1 0 1 STX12 chr1:28099936 5'GT 28099936 Upstream 77bp
chr1 28099860 28099860 1 + C T OV 28099867 + 28099847 28099887 41 GGAACCCGGGGCCCTCGGGGCCCCAGCTCCGGGACTTCAGC GGAACCCGGGGCCTTCGGGGCCCCAGCTCCGGGACTTCAGC < 41bp 1 0.508617310183105 1 0.468491941690445 experiment 0.982765379633791 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STX12 ENSG00000117758 CDS Human protein_coding chr1:28099867 chr1:28099860 synonymous SNV . 0 14 hm5C_associated_SNPs_30979 0 0 1 0 1 STX12 chr1:28099936 5'GT 28099936 Upstream 77bp
chr1 28099860 28099860 1 + C T OV 28099868 + 28099848 28099888 41 GAACCCGGGGCCCTCGGGGCCCCAGCTCCGGGACTTCAGCA GAACCCGGGGCCTTCGGGGCCCCAGCTCCGGGACTTCAGCA < 41bp 1 0.405940056080573 1 0.402965068817139 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STX12 ENSG00000117758 CDS Human protein_coding chr1:28099868 chr1:28099860 synonymous SNV . 0 13 hm5C_associated_SNPs_30980 0 0 1 0 1 STX12 chr1:28099936 5'GT 28099936 Upstream 77bp
chr1 28099860 28099860 1 + C T OV 28099869 + 28099849 28099889 41 AACCCGGGGCCCTCGGGGCCCCAGCTCCGGGACTTCAGCAG AACCCGGGGCCTTCGGGGCCCCAGCTCCGGGACTTCAGCAG < 41bp 1 0.431183075727209 1 0.42561137676239 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STX12 ENSG00000117758 CDS Human protein_coding chr1:28099869 chr1:28099860 synonymous SNV . 0 12 hm5C_associated_SNPs_30981 0 0 1 0 1 STX12 chr1:28099936 5'GT 28099936 Upstream 77bp
chr1 28099860 28099860 1 + C T OV 28099870 + 28099850 28099890 41 ACCCGGGGCCCTCGGGGCCCCAGCTCCGGGACTTCAGCAGC ACCCGGGGCCTTCGGGGCCCCAGCTCCGGGACTTCAGCAGC < 41bp 1 0.707042474361091 1 0.408547431230545 experiment 0.585915051277818 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STX12 ENSG00000117758 CDS Human protein_coding chr1:28099870 chr1:28099860 synonymous SNV . 0 11 hm5C_associated_SNPs_30982 0 0 1 0 1 STX12 chr1:28099936 5'GT 28099936 Upstream 77bp
chr11 6962816 6962816 1 + G C OV 6962809 + 6962789 6962829 41 TCATCTTCCTCAGATATGCCCTGCAAGGACTCTGCCCTGCA TCATCTTCCTCAGATATGCCCTGCAAGCACTCTGCCCTGCA < 41bp 1 0.701789713427879 1 0.321028470993042 experiment 0.596420573144241 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF215 ENSG00000149054 CDS Human protein_coding chr11:6962809 chr11:6962816 nonsynonymous SNV 0.265 3 28 hm5C_associated_SNPs_30983 0 0 1 0 2 ZNF215 chr11:6962802 3'AG 6962802 Downstream 15bp
chr11 6962816 6962816 1 + G C OV 6962809 + 6962789 6962829 41 TCATCTTCCTCAGATATGCCCTGCAAGGACTCTGCCCTGCA TCATCTTCCTCAGATATGCCCTGCAAGCACTCTGCCCTGCA < 41bp 1 0.701789713427879 1 0.321028470993042 experiment 0.596420573144241 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF215 ENSG00000149054 CDS Human protein_coding chr11:6962809 chr11:6962816 nonsynonymous SNV 0.265 3 28 hm5C_associated_SNPs_30983 0 0 1 0 2 ZNF215 chr11:6962884 5'GT 6962884 Upstream 69bp
chr19 8503305 8503305 1 + G T OV 8503319 + 8503299 8503339 41 TACTCCGAGTGGAGAAAGACCAACCAGAAAGTTCGCCTGAA TACTCCTAGTGGAGAAAGACCAACCAGAAAGTTCGCCTGAA < 41bp 1 0.396045918846041 1 0.0734035074710846 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8503319 chr19:8503305 stopgain 0.966 1 7 hm5C_associated_SNPs_30984 0 0 1 0 1 MARCH2 chr19:8503272 3'AG 8503272 Downstream 34bp
chr16 16196532 16196532 1 + A G OV 16196522 + 16196502 16196542 41 GTCCAGGGAAGGAAGCAAAGCAAATGGAGAATGGCATGCTG GTCCAGGGAAGGAAGCAAAGCAAATGGAGAGTGGCATGCTG < 41bp 1 0.329635515727807 1 0.594046771526337 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16196522 chr16:16196532 nonsynonymous SNV 0.970 1 31 hm5C_associated_SNPs_30990 0 0 1 0 2 ABCC1 chr16:16196484 3'AG 16196484 Downstream 49bp
chr16 16196532 16196532 1 + A G OV 16196522 + 16196502 16196542 41 GTCCAGGGAAGGAAGCAAAGCAAATGGAGAATGGCATGCTG GTCCAGGGAAGGAAGCAAAGCAAATGGAGAGTGGCATGCTG < 41bp 1 0.329635515727807 1 0.594046771526337 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16196522 chr16:16196532 nonsynonymous SNV 0.970 1 31 hm5C_associated_SNPs_30990 0 0 1 0 2 ABCC1 chr16:16196574 5'GT 16196574 Upstream 43bp
chr7 142460381 142460381 1 + G C OV 142460366 + 142460346 142460386 41 CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTCTGTGG < 41bp 1 0.176254484279667 1 0.0825222432613373 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460366 chr7:142460381 nonsynonymous SNV 0.015 3 36 hm5C_associated_SNPs_30993 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 100bp
chr7 142460381 142460381 1 + G C OV 142460366 + 142460346 142460386 41 CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTCTGTGG < 41bp 1 0.176254484279667 1 0.0825222432613373 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460366 chr7:142460381 nonsynonymous SNV 0.015 3 36 hm5C_associated_SNPs_30993 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 38bp
chr7 142460381 142460381 1 + G C OV 142460367 + 142460347 142460387 41 TCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG TCCTACCCTGGAAAGATTACCAGCAACATGTTCTCTGTGGG < 41bp 1 0.67038816483398 1 0.759953439235687 experiment 0.65922367033204 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460367 chr7:142460381 nonsynonymous SNV 0.015 3 35 hm5C_associated_SNPs_30994 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 100bp
chr7 142460381 142460381 1 + G C OV 142460367 + 142460347 142460387 41 TCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG TCCTACCCTGGAAAGATTACCAGCAACATGTTCTCTGTGGG < 41bp 1 0.67038816483398 1 0.759953439235687 experiment 0.65922367033204 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460367 chr7:142460381 nonsynonymous SNV 0.015 3 35 hm5C_associated_SNPs_30994 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 38bp
chr7 142460381 142460381 1 + G C OV 142460370 + 142460350 142460390 41 TACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT TACCCTGGAAAGATTACCAGCAACATGTTCTCTGTGGGCTT < 41bp 1 0.453557592583851 1 0.659881055355072 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460370 chr7:142460381 nonsynonymous SNV 0.015 3 32 hm5C_associated_SNPs_30995 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 100bp
chr7 142460381 142460381 1 + G C OV 142460370 + 142460350 142460390 41 TACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT TACCCTGGAAAGATTACCAGCAACATGTTCTCTGTGGGCTT < 41bp 1 0.453557592583851 1 0.659881055355072 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460370 chr7:142460381 nonsynonymous SNV 0.015 3 32 hm5C_associated_SNPs_30995 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 38bp
chr7 142460381 142460381 1 + G C OV 142460373 + 142460353 142460393 41 CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT CCTGGAAAGATTACCAGCAACATGTTCTCTGTGGGCTTCCT < 41bp 1 0.216360351003741 1 0.045592725276947 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460373 chr7:142460381 nonsynonymous SNV 0.015 3 29 hm5C_associated_SNPs_30996 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 100bp
chr7 142460381 142460381 1 + G C OV 142460373 + 142460353 142460393 41 CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT CCTGGAAAGATTACCAGCAACATGTTCTCTGTGGGCTTCCT < 41bp 1 0.216360351003741 1 0.045592725276947 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460373 chr7:142460381 nonsynonymous SNV 0.015 3 29 hm5C_associated_SNPs_30996 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 38bp
chr7 142460381 142460381 1 + G C OV 142460379 + 142460359 142460399 41 AAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG AAGATTACCAGCAACATGTTCTCTGTGGGCTTCCTTGAGGG < 41bp 1 0.267583121008937 1 0.495656818151474 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460379 chr7:142460381 nonsynonymous SNV 0.015 3 23 hm5C_associated_SNPs_30997 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 100bp
chr7 142460381 142460381 1 + G C OV 142460379 + 142460359 142460399 41 AAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG AAGATTACCAGCAACATGTTCTCTGTGGGCTTCCTTGAGGG < 41bp 1 0.267583121008937 1 0.495656818151474 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460379 chr7:142460381 nonsynonymous SNV 0.015 3 23 hm5C_associated_SNPs_30997 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 38bp
chr7 142460381 142460381 1 + G C OV 142460388 + 142460368 142460408 41 AGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA AGCAACATGTTCTCTGTGGGCTTCCTTGAGGGAGGCAAGGA < 41bp 1 0.117507458199881 1 0.105245053768158 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460388 chr7:142460381 nonsynonymous SNV 0.015 3 14 hm5C_associated_SNPs_30998 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 100bp
chr7 142460381 142460381 1 + G C OV 142460388 + 142460368 142460408 41 AGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA AGCAACATGTTCTCTGTGGGCTTCCTTGAGGGAGGCAAGGA < 41bp 1 0.117507458199881 1 0.105245053768158 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460388 chr7:142460381 nonsynonymous SNV 0.015 3 14 hm5C_associated_SNPs_30998 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 38bp
chr7 142460381 142460381 1 + G C OV 142460391 + 142460371 142460411 41 AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC AACATGTTCTCTGTGGGCTTCCTTGAGGGAGGCAAGGATTC < 41bp 1 0.0295096847619613 1 0.0470729470252991 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460391 chr7:142460381 nonsynonymous SNV 0.015 3 11 hm5C_associated_SNPs_30999 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 100bp
chr7 142460381 142460381 1 + G C OV 142460391 + 142460371 142460411 41 AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC AACATGTTCTCTGTGGGCTTCCTTGAGGGAGGCAAGGATTC < 41bp 1 0.0295096847619613 1 0.0470729470252991 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460391 chr7:142460381 nonsynonymous SNV 0.015 3 11 hm5C_associated_SNPs_30999 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 38bp
chr7 142460381 142460381 1 + G C OV 142460392 + 142460372 142460412 41 ACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA ACATGTTCTCTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA < 41bp 1 0.566239098065763 1 0.266722232103348 experiment 0.867521803868475 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460392 chr7:142460381 nonsynonymous SNV 0.015 3 10 hm5C_associated_SNPs_31000 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 100bp
chr7 142460381 142460381 1 + G C OV 142460392 + 142460372 142460412 41 ACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA ACATGTTCTCTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA < 41bp 1 0.566239098065763 1 0.266722232103348 experiment 0.867521803868475 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460392 chr7:142460381 nonsynonymous SNV 0.015 3 10 hm5C_associated_SNPs_31000 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 38bp
chr9 90261465 90261465 1 + C A OV 90261459 + 90261439 90261479 41 ATTAAAAGAGGCTCGAGAATCGATGTCCAGGATAAGGTCAT ATTAAAAGAGGCTCGAGAATCGATGTACAGGATAAGGTCAT < 41bp 1 0.208079349876679 1 0.573358297348022 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90261459 chr9:90261465 synonymous SNV . 0 27 hm5C_associated_SNPs_31002 0 0 0 0 2 DAPK1 chr9:90261376 3'AG 90261376 Downstream 90bp
chr9 90261465 90261465 1 + C A OV 90261459 + 90261439 90261479 41 ATTAAAAGAGGCTCGAGAATCGATGTCCAGGATAAGGTCAT ATTAAAAGAGGCTCGAGAATCGATGTACAGGATAAGGTCAT < 41bp 1 0.208079349876679 1 0.573358297348022 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90261459 chr9:90261465 synonymous SNV . 0 27 hm5C_associated_SNPs_31002 0 0 0 0 2 DAPK1 chr9:90261474 5'GT 90261474 Upstream 10bp
chr1 28607284 28607284 1 + C G OV 28607298 + 28607278 28607318 41 TACGCCCTCCGTGCCATCACCCGCTACATGACCTGACTCCT TACGCCGTCCGTGCCATCACCCGCTACATGACCTGACTCCT < 41bp 1 0.145680572615296 1 0.421677768230438 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SESN2 ENSG00000130766 CDS Human protein_coding chr1:28607298 chr1:28607284 nonsynonymous SNV 0.954 4 7 hm5C_associated_SNPs_31003 0 0 1 0 1 SESN2 chr1:28607227 3'AG 28607227 Downstream 58bp
chr11 66834286 66834286 1 + A T OV 66834276 + 66834256 66834296 41 AGCGTCCTGCTGCTTTGCTTCGATGTCACCAGCCCGAACAG AGCGTCCTGCTGCTTTGCTTCGATGTCACCTGCCCGAACAG < 41bp 1 0.443033368947401 1 0.876156330108643 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RHOD ENSG00000173156 CDS Human protein_coding chr11:66834276 chr11:66834286 nonsynonymous SNV 0.997 2 31 hm5C_associated_SNPs_31004 0 0 0 0 2 RHOD chr11:66834209 3'AG 66834209 Downstream 78bp
chr11 66834286 66834286 1 + A T OV 66834276 + 66834256 66834296 41 AGCGTCCTGCTGCTTTGCTTCGATGTCACCAGCCCGAACAG AGCGTCCTGCTGCTTTGCTTCGATGTCACCTGCCCGAACAG < 41bp 1 0.443033368947401 1 0.876156330108643 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RHOD ENSG00000173156 CDS Human protein_coding chr11:66834276 chr11:66834286 nonsynonymous SNV 0.997 2 31 hm5C_associated_SNPs_31004 0 0 0 0 2 RHOD chr11:66834318 5'GT 66834318 Upstream 33bp
chr19 52714675 52714675 1 + A C OV 52714692 + 52714672 52714712 41 CGCACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCG CGCCCCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCG < 41bp 1 0.435437729826281 1 0.0865324735641479 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52714692 chr19:52714675 nonsynonymous SNV 0.986 2 4 hm5C_associated_SNPs_31005 0 0 1 0 1 PPP2R1A chr19:52714745 5'GT 52714745 Upstream 71bp
chr19 52714675 52714675 1 + A C OV 52714695 + 52714675 52714715 41 ACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCGAGT CCCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCGAGT < 41bp 1 0.751142346799425 1 0.87373411655426 experiment 0.497715306401151 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52714695 chr19:52714675 nonsynonymous SNV 0.986 2 1 hm5C_associated_SNPs_31006 0 0 1 0 1 PPP2R1A chr19:52714745 5'GT 52714745 Upstream 71bp
chr12 132516556 132516556 1 + A C OV 132516568 + 132516548 132516588 41 CTCCACTCACAGCCGTACCACAGGTATAAACCTTGTAGAGG CTCCACTCCCAGCCGTACCACAGGTATAAACCTTGTAGAGG < 41bp 1 0.237023651729572 1 0.263565897941589 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132516568 chr12:132516556 nonsynonymous SNV 0.246 3 9 hm5C_associated_SNPs_31007 0 0 1 0 1 EP400 chr12:132516498 3'AG 132516498 Downstream 59bp
chrX 135291488 135291488 1 + C A OV 135291501 + 135291481 135291521 41 TCTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATC TCTCACCATGTTTCCCAGCGCCAACCTCCGGGGCAGGCATC < 41bp 1 0.0833024073010975 1 0.128952533006668 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291501 chrX:135291488 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_31008 0 0 0 0 1 FHL1 chrX:135291402 3'AG 135291402 Downstream 87bp
chrX 135291488 135291488 1 + C A OV 135291502 + 135291482 135291522 41 CTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATCC CTCACCATGTTTCCCAGCGCCAACCTCCGGGGCAGGCATCC < 41bp 1 0.223585227243449 1 0.0665679574012756 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291502 chrX:135291488 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_31009 0 0 0 0 1 FHL1 chrX:135291402 3'AG 135291402 Downstream 87bp
chr17 55194232 55194232 1 + T A OV 55194240 + 55194220 55194260 41 GGTCTGACTTTGTCACCCTGCCGTTTCAGGGAGCAGAAGTC GGTCTGACTTTGACACCCTGCCGTTTCAGGGAGCAGAAGTC < 41bp 1 0.0464932011762086 1 0.0786873400211334 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194240 chr17:55194232 nonsynonymous SNV 0.998 4 13 hm5C_associated_SNPs_31011 0 0 1 0 2 AKAP1 chr17:55194221 3'AG 55194221 Downstream 12bp
chr17 55194232 55194232 1 + T A OV 55194240 + 55194220 55194260 41 GGTCTGACTTTGTCACCCTGCCGTTTCAGGGAGCAGAAGTC GGTCTGACTTTGACACCCTGCCGTTTCAGGGAGCAGAAGTC < 41bp 1 0.0464932011762086 1 0.0786873400211334 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194240 chr17:55194232 nonsynonymous SNV 0.998 4 13 hm5C_associated_SNPs_31011 0 0 1 0 2 AKAP1 chr17:55194288 5'GT 55194288 Upstream 57bp
chr17 55194232 55194232 1 + T A OV 55194241 + 55194221 55194261 41 GTCTGACTTTGTCACCCTGCCGTTTCAGGGAGCAGAAGTCC GTCTGACTTTGACACCCTGCCGTTTCAGGGAGCAGAAGTCC < 41bp 1 0.0544118827147958 1 0.0560313761234283 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194241 chr17:55194232 nonsynonymous SNV 0.998 4 12 hm5C_associated_SNPs_31012 0 0 1 0 2 AKAP1 chr17:55194221 3'AG 55194221 Downstream 12bp
chr17 55194232 55194232 1 + T A OV 55194241 + 55194221 55194261 41 GTCTGACTTTGTCACCCTGCCGTTTCAGGGAGCAGAAGTCC GTCTGACTTTGACACCCTGCCGTTTCAGGGAGCAGAAGTCC < 41bp 1 0.0544118827147958 1 0.0560313761234283 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194241 chr17:55194232 nonsynonymous SNV 0.998 4 12 hm5C_associated_SNPs_31012 0 0 1 0 2 AKAP1 chr17:55194288 5'GT 55194288 Upstream 57bp
chr20 37144950 37144950 1 + C A OV 37144939 + 37144919 37144959 41 GCAAGAATTGAATCAGTATCCCTGCCTTAAACATCTGCCTC GCAAGAATTGAATCAGTATCCCTGCCTTAAAAATCTGCCTC < 41bp 1 0.132272315535863 1 0.242839217185974 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37144939 chr20:37144950 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_31013 0 0 1 0 1 RALGAPB chr20:37145013 5'GT 37145013 Upstream 64bp
chr11 71946470 71946470 1 + C A OV 71946459 + 71946439 71946479 41 GCTCCATGAAGGTGCGGGTGCCCACGGAGCGCCTGGGCACC GCTCCATGAAGGTGCGGGTGCCCACGGAGCGACTGGGCACC < 41bp 1 0.115353621916795 1 0.0670367181301117 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946459 chr11:71946470 synonymous SNV . 0 32 hm5C_associated_SNPs_31014 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 26bp
chr11 71946470 71946470 1 + C A OV 71946460 + 71946440 71946480 41 CTCCATGAAGGTGCGGGTGCCCACGGAGCGCCTGGGCACCC CTCCATGAAGGTGCGGGTGCCCACGGAGCGACTGGGCACCC < 41bp 1 0.334709694490245 1 0.18289852142334 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946460 chr11:71946470 synonymous SNV . 0 31 hm5C_associated_SNPs_31015 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 26bp
chr11 71946470 71946470 1 + C A OV 71946476 + 71946456 71946496 41 GTGCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGG GTGCCCACGGAGCGACTGGGCACCCGTGAGCGGCTCTACGG < 41bp 1 0.392354593323214 1 0.115058988332748 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946476 chr11:71946470 synonymous SNV . 0 15 hm5C_associated_SNPs_31016 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 26bp
chr11 71946470 71946470 1 + C A OV 71946478 + 71946458 71946498 41 GCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTG GCCCACGGAGCGACTGGGCACCCGTGAGCGGCTCTACGGTG < 41bp 1 0.327343998493085 1 0.101024359464645 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946478 chr11:71946470 synonymous SNV . 0 13 hm5C_associated_SNPs_31017 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 26bp
chr11 71946470 71946470 1 + C A OV 71946479 + 71946459 71946499 41 CCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTGG CCCACGGAGCGACTGGGCACCCGTGAGCGGCTCTACGGTGG < 41bp 1 0.167745624262474 1 0.464266926050186 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946479 chr11:71946470 synonymous SNV . 0 12 hm5C_associated_SNPs_31018 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 26bp
chr11 71946470 71946470 1 + C A OV 71946480 + 71946460 71946500 41 CCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTGGG CCACGGAGCGACTGGGCACCCGTGAGCGGCTCTACGGTGGG < 41bp 1 0.751733789099654 1 0.613273322582245 experiment 0.496532421800693 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946480 chr11:71946470 synonymous SNV . 0 11 hm5C_associated_SNPs_31019 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 26bp
chr5 65118661 65118661 1 + G A OV 65118652 + 65118632 65118672 41 AATCCTGAAACCTGGGGGATCTCTGGACGGCATGGACATGC AATCCTGAAACCTGGGGGATCTCTGGACGACATGGACATGC < 41bp 1 0.396480735844019 1 0.238190561532974 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NLN ENSG00000123213 CDS Human protein_coding chr5:65118652 chr5:65118661 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_31022 0 0 1 0 1 NLN chr5:65118609 3'AG 65118609 Downstream 53bp
chrX 41000577 41000577 1 + A G OV 41000586 + 41000566 41000606 41 TCAATGGAAAGATGAATGCACTGAATGAAGTTAATAAGGTG TCAATGGAAAGGTGAATGCACTGAATGAAGTTAATAAGGTG < 41bp 1 0.322366559863296 1 0.29094922542572 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41000586 chrX:41000577 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_31023 0 0 1 0 1 USP9X chrX:41000546 3'AG 41000546 Downstream 32bp
chrX 70519852 70519852 1 + G T OV 70519864 + 70519844 70519884 41 GGGCAATTGGTGGAACTCCTCCTGCATTCAACCGTGCAGCT GGGCAATTTGTGGAACTCCTCCTGCATTCAACCGTGCAGCT < 41bp 1 0.209029641005986 1 0.284958869218826 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70519864 chrX:70519852 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_31024 0 0 1 0 1 NONO chrX:70519792 3'AG 70519792 Downstream 61bp
chr14 74424918 74424918 1 + G A OV 74424923 + 74424903 74424943 41 CCATTTCCTATGGCCGACTCCAGCCCTTGGGTTCATATTAC CCATTTCCTATGGCCAACTCCAGCCCTTGGGTTCATATTAC < 41bp 1 0.390196988396057 1 0.226500034332275 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ6 ENSG00000119723 CDS Human protein_coding chr14:74424923 chr14:74424918 nonsynonymous SNV 0.992 1 16 hm5C_associated_SNPs_31030 0 0 1 0 2 COQ6 chr14:74424850 3'AG 74424850 Downstream 69bp
chr14 74424918 74424918 1 + G A OV 74424923 + 74424903 74424943 41 CCATTTCCTATGGCCGACTCCAGCCCTTGGGTTCATATTAC CCATTTCCTATGGCCAACTCCAGCCCTTGGGTTCATATTAC < 41bp 1 0.390196988396057 1 0.226500034332275 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ6 ENSG00000119723 CDS Human protein_coding chr14:74424923 chr14:74424918 nonsynonymous SNV 0.992 1 16 hm5C_associated_SNPs_31030 0 0 1 0 2 COQ6 chr14:74424980 5'GT 74424980 Upstream 63bp
chr5 162905760 162905760 1 + G C OV 162905772 + 162905752 162905792 41 AAAAGTATGACAGTATGGTGCAAAGCCTTGAAGATGTTACT AAAAGTATCACAGTATGGTGCAAAGCCTTGAAGATGTTACT < 41bp 1 0.270441635660442 1 0.198527276515961 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HMMR ENSG00000072571 CDS Human protein_coding chr5:162905772 chr5:162905760 nonsynonymous SNV 0.001 0 9 hm5C_associated_SNPs_31031 0 0 1 0 2 HMMR chr5:162905690 3'AG 162905690 Downstream 71bp
chr5 162905760 162905760 1 + G C OV 162905772 + 162905752 162905792 41 AAAAGTATGACAGTATGGTGCAAAGCCTTGAAGATGTTACT AAAAGTATCACAGTATGGTGCAAAGCCTTGAAGATGTTACT < 41bp 1 0.270441635660442 1 0.198527276515961 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HMMR ENSG00000072571 CDS Human protein_coding chr5:162905772 chr5:162905760 nonsynonymous SNV 0.001 0 9 hm5C_associated_SNPs_31031 0 0 1 0 2 HMMR chr5:162905806 5'GT 162905806 Upstream 47bp
chr7 98601890 98601890 1 + G C OV 98601905 + 98601885 98601925 41 TCTTGGAGGCCAAGACCAAGCAACTCCCCAAATTCTTCCTC TCTTGCAGGCCAAGACCAAGCAACTCCCCAAATTCTTCCTC < 41bp 1 0.128142865709468 1 0.466768711805344 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98601905 chr7:98601890 nonsynonymous SNV 0.966 3 6 hm5C_associated_SNPs_31034 0 0 1 0 1 TRRAP chr7:98601813 3'AG 98601813 Downstream 78bp
chr16 55532238 55532238 1 + G A OV 55532248 + 55532228 55532268 41 GCACCCTGGAGCGAGGGTACCCCAAGCCACTGACCAGCCTG GCACCCTGGAACGAGGGTACCCCAAGCCACTGACCAGCCTG < 41bp 1 0.587009963142608 1 0.123633146286011 experiment 0.825980073714784 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MMP2 ENSG00000087245 CDS Human protein_coding chr16:55532248 chr16:55532238 synonymous SNV . 0 11 hm5C_associated_SNPs_31035 0 0 0 0 1 MMP2 chr16:55532201 3'AG 55532201 Downstream 38bp
chr19 18967738 18967738 1 + C T OV 18967720 + 18967700 18967740 41 CTGCTGCACATGTGTGGGCGCCGGTGACCCGAGGCTGGCCA CTGCTGCACATGTGTGGGCGCCGGTGACCCGAGGCTGGTCA < 41bp 1 0.193446032511392 1 0.592044115066528 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18967720 chr19:18967738 nonsynonymous SNV 0.887 1 39 hm5C_associated_SNPs_31036 0 0 1 0 2 UPF1 chr19:18967686 3'AG 18967686 Downstream 53bp
chr19 18967738 18967738 1 + C T OV 18967720 + 18967700 18967740 41 CTGCTGCACATGTGTGGGCGCCGGTGACCCGAGGCTGGCCA CTGCTGCACATGTGTGGGCGCCGGTGACCCGAGGCTGGTCA < 41bp 1 0.193446032511392 1 0.592044115066528 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18967720 chr19:18967738 nonsynonymous SNV 0.887 1 39 hm5C_associated_SNPs_31036 0 0 1 0 2 UPF1 chr19:18967829 5'GT 18967829 Upstream 92bp
chr6 31602070 31602070 1 + G C OV 31602058 + 31602038 31602078 41 CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAG CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCACGCCCTCAG < 41bp 1 0.520613344563752 1 0.321363866329193 experiment 0.958773310872496 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602058 chr6:31602070 nonsynonymous SNV 0.998 0 33 hm5C_associated_SNPs_31037 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 58bp
chr6 31602070 31602070 1 + G C OV 31602058 + 31602038 31602078 41 CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAG CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCACGCCCTCAG < 41bp 1 0.520613344563752 1 0.321363866329193 experiment 0.958773310872496 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602058 chr6:31602070 nonsynonymous SNV 0.998 0 33 hm5C_associated_SNPs_31037 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 73bp
chr6 31602070 31602070 1 + G C OV 31602059 + 31602039 31602079 41 TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGG TGGATTCTTGGGCTCTAAGCCTGAGGGCCCACGCCCTCAGG < 41bp 1 0.507938993300459 1 0.805681943893433 experiment 0.984122013399083 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602059 chr6:31602070 nonsynonymous SNV 0.998 0 32 hm5C_associated_SNPs_31038 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 58bp
chr6 31602070 31602070 1 + G C OV 31602059 + 31602039 31602079 41 TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGG TGGATTCTTGGGCTCTAAGCCTGAGGGCCCACGCCCTCAGG < 41bp 1 0.507938993300459 1 0.805681943893433 experiment 0.984122013399083 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602059 chr6:31602070 nonsynonymous SNV 0.998 0 32 hm5C_associated_SNPs_31038 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 73bp
chr6 31602070 31602070 1 + G C OV 31602066 + 31602046 31602086 41 TTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTC TTGGGCTCTAAGCCTGAGGGCCCACGCCCTCAGGCAGAGTC < 41bp 1 0.145800680553635 1 0.137005776166916 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602066 chr6:31602070 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_31039 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 58bp
chr6 31602070 31602070 1 + G C OV 31602066 + 31602046 31602086 41 TTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTC TTGGGCTCTAAGCCTGAGGGCCCACGCCCTCAGGCAGAGTC < 41bp 1 0.145800680553635 1 0.137005776166916 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602066 chr6:31602070 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_31039 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 73bp
chr6 31602070 31602070 1 + G C OV 31602072 + 31602052 31602092 41 TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGA TCTAAGCCTGAGGGCCCACGCCCTCAGGCAGAGTCCAGAGA < 41bp 1 0.184588214830413 1 0.0714057683944702 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602072 chr6:31602070 nonsynonymous SNV 0.998 0 19 hm5C_associated_SNPs_31040 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 58bp
chr6 31602070 31602070 1 + G C OV 31602072 + 31602052 31602092 41 TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGA TCTAAGCCTGAGGGCCCACGCCCTCAGGCAGAGTCCAGAGA < 41bp 1 0.184588214830413 1 0.0714057683944702 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602072 chr6:31602070 nonsynonymous SNV 0.998 0 19 hm5C_associated_SNPs_31040 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 73bp
chr6 31602070 31602070 1 + G C OV 31602073 + 31602053 31602093 41 CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGAT CTAAGCCTGAGGGCCCACGCCCTCAGGCAGAGTCCAGAGAT < 41bp 1 0.309851885167908 1 0.159002035856247 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602073 chr6:31602070 nonsynonymous SNV 0.998 0 18 hm5C_associated_SNPs_31041 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 58bp
chr6 31602070 31602070 1 + G C OV 31602073 + 31602053 31602093 41 CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGAT CTAAGCCTGAGGGCCCACGCCCTCAGGCAGAGTCCAGAGAT < 41bp 1 0.309851885167908 1 0.159002035856247 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602073 chr6:31602070 nonsynonymous SNV 0.998 0 18 hm5C_associated_SNPs_31041 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 73bp
chr6 31602070 31602070 1 + G C OV 31602074 + 31602054 31602094 41 TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATA TAAGCCTGAGGGCCCACGCCCTCAGGCAGAGTCCAGAGATA < 41bp 1 0.384163225086912 1 0.350755035877228 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602074 chr6:31602070 nonsynonymous SNV 0.998 0 17 hm5C_associated_SNPs_31042 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 58bp
chr6 31602070 31602070 1 + G C OV 31602074 + 31602054 31602094 41 TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATA TAAGCCTGAGGGCCCACGCCCTCAGGCAGAGTCCAGAGATA < 41bp 1 0.384163225086912 1 0.350755035877228 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602074 chr6:31602070 nonsynonymous SNV 0.998 0 17 hm5C_associated_SNPs_31042 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 73bp
chr6 31602070 31602070 1 + G C OV 31602076 + 31602056 31602096 41 AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACA AGCCTGAGGGCCCACGCCCTCAGGCAGAGTCCAGAGATACA < 41bp 1 0.441166109450076 1 0.840992271900177 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602076 chr6:31602070 nonsynonymous SNV 0.998 0 15 hm5C_associated_SNPs_31043 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 58bp
chr6 31602070 31602070 1 + G C OV 31602076 + 31602056 31602096 41 AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACA AGCCTGAGGGCCCACGCCCTCAGGCAGAGTCCAGAGATACA < 41bp 1 0.441166109450076 1 0.840992271900177 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602076 chr6:31602070 nonsynonymous SNV 0.998 0 15 hm5C_associated_SNPs_31043 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 73bp
chr6 31602070 31602070 1 + G C OV 31602080 + 31602060 31602100 41 TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCA TGAGGGCCCACGCCCTCAGGCAGAGTCCAGAGATACAGGCA < 41bp 1 0.400568301577624 1 0.662542223930359 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602080 chr6:31602070 nonsynonymous SNV 0.998 0 11 hm5C_associated_SNPs_31044 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 58bp
chr6 31602070 31602070 1 + G C OV 31602080 + 31602060 31602100 41 TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCA TGAGGGCCCACGCCCTCAGGCAGAGTCCAGAGATACAGGCA < 41bp 1 0.400568301577624 1 0.662542223930359 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602080 chr6:31602070 nonsynonymous SNV 0.998 0 11 hm5C_associated_SNPs_31044 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 73bp
chr6 80409218 80409218 1 + G A OV 80409221 + 80409201 80409241 41 TTTTTTTTTTATAGGCAGAACCTTAGAGAAGAAGAGTGGAA TTTTTTTTTTATAGGCAAAACCTTAGAGAAGAAGAGTGGAA < 41bp 1 0.0735567041202812 1 0.150394916534424 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SH3BGRL2 ENSG00000198478 CDS Human protein_coding chr6:80409221 chr6:80409218 nonsynonymous SNV 0.956 0 18 hm5C_associated_SNPs_31046 0 0 1 0 1 SH3BGRL2 chr6:80409215 3'AG 80409215 Downstream 4bp
chr2 217311769 217311769 1 + G A OV 217311766 + 217311746 217311786 41 CAAGAGGGTGATCCTGTTGTCGGGCACACCAGCCATGTCCC CAAGAGGGTGATCCTGTTGTCGGACACACCAGCCATGTCCC < 41bp 1 0.589913617018849 1 0.849772572517395 experiment 0.820172765962303 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311766 chr2:217311769 nonsynonymous SNV 0.970 5 24 hm5C_associated_SNPs_31047 0 0 0 0 1 SMARCAL1 chr2:217311741 3'AG 217311741 Downstream 29bp
chr1 156876650 156876650 1 + C T OV 156876640 + 156876620 156876660 41 TGCGATCCCCAGACTGGAGCCTGCTTCTGCCCCGCAGAGAG TGCGATCCCCAGACTGGAGCCTGCTTCTGCTCCGCAGAGAG < 41bp 1 0.279471866602229 1 0.207077115774155 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156876640 chr1:156876650 nonsynonymous SNV 0.979 1 31 hm5C_associated_SNPs_31048 0 0 0 0 1 PEAR1 chr1:156876672 5'GT 156876672 Upstream 23bp
chr2 157407246 157407246 1 + C A OV 157407233 + 157407213 157407253 41 GCCAGCCAAGTGCTGGTGTCCATATTGTGATGCCTGGTTAT GCCAGCCAAGTGCTGGTGTCCATATTGTGATGCATGGTTAT < 41bp 1 0.135217574170557 1 0.280665516853333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407233 chr2:157407246 nonsynonymous SNV 0.991 5 34 hm5C_associated_SNPs_31049 0 0 1 2 1 GPD2 chr2:157407258 5'GT 157407258 Upstream 13bp
chr10 70737292 70737292 1 + G A OV 70737312 + 70737292 70737332 41 GATTCCGTGCCTCCCACTGCCATTAGTCACTTCAAACAATC AATTCCGTGCCTCCCACTGCCATTAGTCACTTCAAACAATC < 41bp 1 0.362579707105731 1 0.017286479473114 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX21 ENSG00000165732 CDS Human protein_coding chr10:70737312 chr10:70737292 nonsynonymous SNV 0.999 2 1 hm5C_associated_SNPs_31056 0 0 1 0 1 DDX21 chr10:70737285 3'AG 70737285 Downstream 8bp
chr7 40102476 40102476 1 + G T OV 40102465 + 40102445 40102485 41 TAATTACTTTATGGTACCGTCCACCTGAACTGCTACTGGGA TAATTACTTTATGGTACCGTCCACCTGAACTTCTACTGGGA < 41bp 1 0.0482956426452935 1 0.139220505952835 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:40102465 chr7:40102476 synonymous SNV . 0 32 hm5C_associated_SNPs_31057 0 0 1 0 2 CDK13 chr7:40102425 3'AG 40102425 Downstream 52bp
chr7 40102476 40102476 1 + G T OV 40102465 + 40102445 40102485 41 TAATTACTTTATGGTACCGTCCACCTGAACTGCTACTGGGA TAATTACTTTATGGTACCGTCCACCTGAACTTCTACTGGGA < 41bp 1 0.0482956426452935 1 0.139220505952835 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:40102465 chr7:40102476 synonymous SNV . 0 32 hm5C_associated_SNPs_31057 0 0 1 0 2 CDK13 chr7:40102526 5'GT 40102526 Upstream 51bp
chr20 61291851 61291851 1 + C T OV 61291833 + 61291813 61291853 41 GGCTTCCTGGGCTCTGGGGCCGCTGCTTTCTTCACCGCCGT GGCTTCCTGGGCTCTGGGGCCGCTGCTTTCTTCACCGCTGT < 41bp 1 0.405087293288523 1 0.303100943565369 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61291833 chr20:61291851 synonymous SNV . 0 39 hm5C_associated_SNPs_31061 0 0 0 0 2 SLCO4A1 chr20:61291764 3'AG 61291764 Downstream 88bp
chr20 61291851 61291851 1 + C T OV 61291833 + 61291813 61291853 41 GGCTTCCTGGGCTCTGGGGCCGCTGCTTTCTTCACCGCCGT GGCTTCCTGGGCTCTGGGGCCGCTGCTTTCTTCACCGCTGT < 41bp 1 0.405087293288523 1 0.303100943565369 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61291833 chr20:61291851 synonymous SNV . 0 39 hm5C_associated_SNPs_31061 0 0 0 0 2 SLCO4A1 chr20:61291885 5'GT 61291885 Upstream 35bp
chr11 46747441 46747441 1 + C T OV 46747436 + 46747416 46747456 41 TCAAGTCACTGTAGCGATGACTCCACGCTCCGAAGGCTCCA TCAAGTCACTGTAGCGATGACTCCATGCTCCGAAGGCTCCA < 41bp 1 0.760853590913738 1 0.976727664470673 experiment 0.478292818172524 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control F2 ENSG00000180210 CDS Human protein_coding chr11:46747436 chr11:46747441 nonsynonymous SNV 0.103 2 26 hm5C_associated_SNPs_31062 0 0 0 0 1 F2 chr11:46747409 3'AG 46747409 Downstream 33bp
chr20 62366049 62366049 1 + T C OV 62366054 + 62366034 62366074 41 TGCCCTCTGTCCGTCTCTTGCAGTGGTGGGGTCAGATGCTG TGCCCTCTGTCCGTCCCTTGCAGTGGTGGGGTCAGATGCTG < 41bp 1 0.441134751060493 1 0.247981309890747 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZGPAT ENSG00000197114 CDS Human protein_coding chr20:62366054 chr20:62366049 synonymous SNV . 0 16 hm5C_associated_SNPs_31063 0 0 1 0 1 ZGPAT chr20:62365997 3'AG 62365997 Downstream 53bp
chr19 41078000 41078000 1 + C T OV 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GGACTCCAAGGGCCCGGCATCTGGGAGCACACACGGTGGGG < 41bp 1 0.633038539099258 1 0.874019503593445 experiment 0.733922921801484 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41078000 synonymous SNV . 0 22 hm5C_associated_SNPs_31065 0 0 1 0 2 SPTBN4 chr19:41077925 3'AG 41077925 Downstream 76bp
chr19 41078000 41078000 1 + C T OV 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GGACTCCAAGGGCCCGGCATCTGGGAGCACACACGGTGGGG < 41bp 1 0.633038539099258 1 0.874019503593445 experiment 0.733922921801484 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41078000 synonymous SNV . 0 22 hm5C_associated_SNPs_31065 0 0 1 0 2 SPTBN4 chr19:41078098 5'GT 41078098 Upstream 99bp
chr10 75867093 75867093 1 + C G OV 75867081 + 75867061 75867101 41 ACCTCAGGAGCCTGACTTCCCGCCGCCTCCACCAGACCTTG ACCTCAGGAGCCTGACTTCCCGCCGCCTCCACGAGACCTTG < 41bp 1 0.662282909626358 1 0.199391514062881 experiment 0.675434180747283 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75867081 chr10:75867093 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_31066 0 0 1 0 1 VCL chr10:75867112 5'GT 75867112 Upstream 20bp
chr12 58111998 58111998 1 + A T OV 58112014 + 58111994 58112034 41 AGAGAAGGAAAGGGGTGATCCAGAACGGCAGAGAGAGATGG AGAGTAGGAAAGGGGTGATCCAGAACGGCAGAGAGAGATGG < 41bp 1 0.774975697292903 1 0.613829135894775 experiment 0.450048605414193 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout OS9 ENSG00000135506 CDS Human protein_coding chr12:58112014 chr12:58111998 stopgain 0.118 0 5 hm5C_associated_SNPs_31067 0 0 1 0 1 OS9 chr12:58111929 3'AG 58111929 Downstream 70bp
chr19 16314404 16314404 1 + G A OV 16314393 + 16314373 16314413 41 TCCTGGCCCACGGGGGGGTCCGTTTCATGTGGATCAAACAC TCCTGGCCCACGGGGGGGTCCGTTTCATGTGAATCAAACAC < 41bp 1 0.0923151059941879 1 0.182765632867813 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16314393 chr19:16314404 stopgain 1.000 1 32 hm5C_associated_SNPs_31068 0 0 1 0 1 AP1M1 chr19:16314426 5'GT 16314426 Upstream 23bp
chrX 70775817 70775817 1 + A C OV 70775814 + 70775794 70775834 41 TGTTTTCTAGGTTGCTGAAGCAGAAGATTGTTATAATACAG TGTTTTCTAGGTTGCTGAAGCAGCAGATTGTTATAATACAG < 41bp 1 0.71120833132041 1 0.453077971935272 experiment 0.57758333735918 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70775814 chrX:70775817 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_31069 0 0 1 0 1 OGT chrX:70775804 3'AG 70775804 Downstream 14bp
chrX 70775816 70775816 1 + G T OV 70775814 + 70775794 70775834 41 TGTTTTCTAGGTTGCTGAAGCAGAAGATTGTTATAATACAG TGTTTTCTAGGTTGCTGAAGCATAAGATTGTTATAATACAG < 41bp 1 0.326255853378623 1 0.380445420742035 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70775814 chrX:70775816 stopgain 1.000 1 23 hm5C_associated_SNPs_31070 0 0 1 0 1 OGT chrX:70775804 3'AG 70775804 Downstream 13bp
chr1 192779364 192779364 1 + C T PAAD 192779358 + 192779338 192779378 41 TTCCTCTACTCCTGGGAAGCCCAAAACCGGCAAAAAAAGCA TTCCTCTACTCCTGGGAAGCCCAAAATCGGCAAAAAAAGCA < 41bp 1 0.344053754846467 1 0.587851703166962 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RGS2 ENSG00000116741 CDS Human protein_coding chr1:192779358 chr1:192779364 nonsynonymous SNV 0.995 0 27 hm5C_associated_SNPs_31071 0 0 0 0 2 RGS2 chr1:192779296 3'AG 192779296 Downstream 69bp
chr1 192779364 192779364 1 + C T PAAD 192779358 + 192779338 192779378 41 TTCCTCTACTCCTGGGAAGCCCAAAACCGGCAAAAAAAGCA TTCCTCTACTCCTGGGAAGCCCAAAATCGGCAAAAAAAGCA < 41bp 1 0.344053754846467 1 0.587851703166962 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RGS2 ENSG00000116741 CDS Human protein_coding chr1:192779358 chr1:192779364 nonsynonymous SNV 0.995 0 27 hm5C_associated_SNPs_31071 0 0 0 0 2 RGS2 chr1:192779397 5'GT 192779397 Upstream 34bp
chr16 29821441 29821441 1 + G A PAAD 29821428 + 29821408 29821448 41 GGTTTGTCCAATGGCGGCGGCAGCGGCAGCGGCGGCAGCGG GGTTTGTCCAATGGCGGCGGCAGCGGCAGCGGCAGCAGCGG < 41bp 1 0.759650267745185 1 0.403252601623535 experiment 0.48069946450963 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAZ ENSG00000103495 CDS Human protein_coding chr16:29821428 chr16:29821441 nonsynonymous SNV 0.000 1 34 hm5C_associated_SNPs_31072 0 0 1 0 1 MAZ chr16:29821398 3'AG 29821398 Downstream 44bp
chr20 19981313 19981313 1 + C G PAAD 19981314 + 19981294 19981334 41 GTTGCACAGGAAAGACCCTCCTTGTGAGACCTTACATCACC GTTGCACAGGAAAGACCCTGCTTGTGAGACCTTACATCACC < 41bp 1 0.381310173966264 1 0.181915163993835 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIN2 ENSG00000132669 CDS Human protein_coding chr20:19981314 chr20:19981313 synonymous SNV . 0 20 hm5C_associated_SNPs_31075 0 0 0 0 1 RIN2 chr20:19981257 3'AG 19981257 Downstream 57bp
chr14 100594935 100594935 1 + A C PAAD 100594949 + 100594929 100594969 41 CCCCCCACCCCCAGTCCCACCTCCACCCACTGGGGCTACCC CCCCCCCCCCCCAGTCCCACCTCCACCCACTGGGGCTACCC < 41bp 1 0.657631991275933 1 0.93513435125351 experiment 0.684736017448133 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EVL ENSG00000196405 CDS Human protein_coding chr14:100594949 chr14:100594935 synonymous SNV . 0 7 hm5C_associated_SNPs_31076 0 0 0 0 1 EVL chr14:100594856 3'AG 100594856 Downstream 80bp
chr20 60701454 60701454 1 + G A PAAD 60701448 + 60701428 60701468 41 GGCGCCCTACGGCCCGCTGGCGGCCAGCTCCCTGCTCAGCC GGCGCCCTACGGCCCGCTGGCGGCCAACTCCCTGCTCAGCC < 41bp 1 0.681520705770127 1 0.800320386886597 experiment 0.636958588459747 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSM14B ENSG00000149657 CDS Human protein_coding chr20:60701448 chr20:60701454 nonsynonymous SNV 0.999 1 27 hm5C_associated_SNPs_31077 0 0 1 0 2 LSM14B chr20:60701360 3'AG 60701360 Downstream 95bp
chr20 60701454 60701454 1 + G A PAAD 60701448 + 60701428 60701468 41 GGCGCCCTACGGCCCGCTGGCGGCCAGCTCCCTGCTCAGCC GGCGCCCTACGGCCCGCTGGCGGCCAACTCCCTGCTCAGCC < 41bp 1 0.681520705770127 1 0.800320386886597 experiment 0.636958588459747 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSM14B ENSG00000149657 CDS Human protein_coding chr20:60701448 chr20:60701454 nonsynonymous SNV 0.999 1 27 hm5C_associated_SNPs_31077 0 0 1 0 2 LSM14B chr20:60701495 5'GT 60701495 Upstream 42bp
chr19 3574395 3574395 1 + C T PAAD 3574378 + 3574358 3574398 41 AACGACGCAGCCCGGTTCTGCAGCCGGTGAAGAAACGCGGC AACGACGCAGCCCGGTTCTGCAGCCGGTGAAGAAACGTGGC < 41bp 1 0.515237474299193 1 0.553352773189545 experiment 0.969525051401614 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HMG20B ENSG00000064961 CDS Human protein_coding chr19:3574378 chr19:3574395 nonsynonymous SNV 0.990 1 38 hm5C_associated_SNPs_31078 0 0 1 0 1 HMG20B chr19:3574381 3'AG 3574381 Downstream 15bp
chr3 13672892 13672892 1 + G A PAAD 13672900 + 13672880 13672920 41 TCAACGTGCCAGGGAGCTACCAGTGTGCATGCCCTGAGCAG TCAACGTGCCAGAGAGCTACCAGTGTGCATGCCCTGAGCAG < 41bp 1 0.522167948734711 1 0.33734005689621 experiment 0.955664102530577 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13672900 chr3:13672892 nonsynonymous SNV 0.920 5 13 hm5C_associated_SNPs_31079 0 0 0 0 1 FBLN2 chr3:13672829 3'AG 13672829 Downstream 64bp
chr18 48604703 48604703 1 + T G PAAD 48604710 + 48604690 48604730 41 TTTTGTGAAAGGCTGGGGACCGGATTACCCAAGACAGAGCA TTTTGTGAAAGGCGGGGGACCGGATTACCCAAGACAGAGCA < 41bp 1 0.515730676463909 1 0.71130633354187 experiment 0.968538647072182 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48604710 chr18:48604703 nonsynonymous SNV 1.000 5 14 hm5C_associated_SNPs_31081 0 0 1 0 1 SMAD4 chr18:48604626 3'AG 48604626 Downstream 78bp
chr17 7750213 7750213 1 + C T PAAD 7750209 + 7750189 7750229 41 CACCACCACCACCACCACCACCACCACCCCTGCCTGGCCTG CACCACCACCACCACCACCACCACTACCCCTGCCTGGCCTG < 41bp 1 0.0480859035036001 1 0.196627974510193 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7750209 chr17:7750213 nonsynonymous SNV 0.923 2 25 hm5C_associated_SNPs_31083 0 0 1 0 1 KDM6B chr17:7750137 3'AG 7750137 Downstream 77bp
chr1 11897102 11897102 1 + A G PAAD 11897086 + 11897066 11897106 41 TCCTCACCCGGGCTGGCGAGCAGCGCAAACGGAGCCAGTCC TCCTCACCCGGGCTGGCGAGCAGCGCAAACGGAGCCGGTCC < 41bp 1 0.744569689282414 1 0.867687821388245 experiment 0.510860621435172 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11897086 chr1:11897102 nonsynonymous SNV 0.998 2 37 hm5C_associated_SNPs_31102 0 0 1 0 1 CLCN6 chr1:11897056 3'AG 11897056 Downstream 47bp
chr3 186302256 186302256 1 + C T PAAD 186302261 + 186302241 186302281 41 TCACCAGGCCAGGAGCGAAGCTATGGAAGAAAGGGGAAGGG TCACCAGGCCAGGAGTGAAGCTATGGAAGAAAGGGGAAGGG < 41bp 1 0.466421611284846 1 0.192480564117432 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186302261 chr3:186302256 nonsynonymous SNV 0.995 1 16 hm5C_associated_SNPs_31103 0 0 1 0 1 DNAJB11 chr3:186302219 3'AG 186302219 Downstream 38bp
chr7 128407587 128407587 1 + C T PAAD 128407572 + 128407552 128407592 41 GGGTAAAGACAGAGCGAGAGCAGTTTGTTGAGTTTCGGGAT GGGTAAAGACAGAGCGAGAGCAGTTTGTTGAGTTTTGGGAT < 41bp 1 0.42436168161938 1 0.118016600608826 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALU ENSG00000128595 CDS Human protein_coding chr7:128407572 chr7:128407587 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_31116 0 0 1 0 1 CALU chr7:128407510 3'AG 128407510 Downstream 78bp
chr7 128407587 128407587 1 + C T PAAD 128407598 + 128407578 128407618 41 GTTGAGTTTCGGGATAAGAACCGTGATGGGAAGATGGACAA GTTGAGTTTTGGGATAAGAACCGTGATGGGAAGATGGACAA < 41bp 1 0.509703629758366 1 0.125372111797333 experiment 0.980592740483269 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALU ENSG00000128595 CDS Human protein_coding chr7:128407598 chr7:128407587 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_31117 0 0 1 0 1 CALU chr7:128407510 3'AG 128407510 Downstream 78bp
chr2 113315647 113315647 1 + G A PAAD 113315643 + 113315623 113315663 41 ACCTTTTTGCTACTGGGAATCTGCGTTCTAAAACAGGTAAA ACCTTTTTGCTACTGGGAATCTGCATTCTAAAACAGGTAAA < 41bp 1 0.68804439639677 1 0.900206029415131 experiment 0.623911207206459 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113315643 chr2:113315647 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_31118 0 0 1 0 1 POLR1B chr2:113315658 5'GT 113315658 Upstream 12bp
chr6 168363200 168363200 1 + C T PAAD 168363202 + 168363182 168363222 41 GCGAGGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG GCGAGGCAAGAGGAAGAGTGCCGGCGGCAGGAGGAGGAGCG < 41bp 1 0.260926837542592 1 0.45601612329483 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363202 chr6:168363200 nonsynonymous SNV 0.005 3 19 hm5C_associated_SNPs_31122 0 0 1 0 3 AFDN chr6:168363113 3'AG 168363113 Downstream 88bp
chr6 168363200 168363200 1 + C T PAAD 168363202 + 168363182 168363222 41 GCGAGGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG GCGAGGCAAGAGGAAGAGTGCCGGCGGCAGGAGGAGGAGCG < 41bp 1 0.260926837542592 1 0.45601612329483 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363202 chr6:168363200 nonsynonymous SNV 0.005 3 19 hm5C_associated_SNPs_31122 0 0 1 0 3 AFDN chr6:168363119 3'AG 168363119 Downstream 82bp
chr6 168363200 168363200 1 + C T PAAD 168363202 + 168363182 168363222 41 GCGAGGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG GCGAGGCAAGAGGAAGAGTGCCGGCGGCAGGAGGAGGAGCG < 41bp 1 0.260926837542592 1 0.45601612329483 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363202 chr6:168363200 nonsynonymous SNV 0.005 3 19 hm5C_associated_SNPs_31122 0 0 1 0 3 AFDN chr6:168363247 5'GT 168363247 Upstream 48bp
chr16 697444 697444 1 + T G PAAD 697463 + 697443 697483 41 GTGTGAATGGCCGGCGGGCCCCCTCCACGTCCCCATCCTTC GGGTGAATGGCCGGCGGGCCCCCTCCACGTCCCCATCCTTC < 41bp 1 0.124961766384601 1 0.059614360332489 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MCRIP2 ENSG00000172366 CDS Human protein_coding chr16:697463 chr16:697444 synonymous SNV . 0 2 hm5C_associated_SNPs_31124 0 0 1 0 1 MCRIP2 chr16:697417 3'AG 697417 Downstream 28bp
chr8 22064400 22064400 1 + G A PAAD 22064413 + 22064393 22064433 41 ACCAGTGGTACCATCACCAGCCCCAACTGGCCTGACAAGTA ACCAGTGATACCATCACCAGCCCCAACTGGCCTGACAAGTA < 41bp 1 0.181374695471888 1 0.45522552728653 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22064413 chr8:22064400 nonsynonymous SNV 0.998 3 8 hm5C_associated_SNPs_31125 0 0 0 0 2 BMP1 chr8:22064367 3'AG 22064367 Downstream 34bp
chr8 22064400 22064400 1 + G A PAAD 22064413 + 22064393 22064433 41 ACCAGTGGTACCATCACCAGCCCCAACTGGCCTGACAAGTA ACCAGTGATACCATCACCAGCCCCAACTGGCCTGACAAGTA < 41bp 1 0.181374695471888 1 0.45522552728653 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22064413 chr8:22064400 nonsynonymous SNV 0.998 3 8 hm5C_associated_SNPs_31125 0 0 0 0 2 BMP1 chr8:22064494 5'GT 22064494 Upstream 95bp
chr16 70589068 70589068 1 + G A PAAD 70589071 + 70589051 70589091 41 AGCGACAAGTGGTGATTGCCCTGACAGGAGGAGAGCTGGTC AGCGACAAGTGGTGATTACCCTGACAGGAGGAGAGCTGGTC < 41bp 1 0.412032776882949 1 0.157458662986755 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589071 chr16:70589068 nonsynonymous SNV 0.999 1 18 hm5C_associated_SNPs_31128 0 0 1 0 1 SF3B3 chr16:70589109 5'GT 70589109 Upstream 42bp
chr16 70589068 70589068 1 + G A PAAD 70589075 + 70589055 70589095 41 ACAAGTGGTGATTGCCCTGACAGGAGGAGAGCTGGTCTATT ACAAGTGGTGATTACCCTGACAGGAGGAGAGCTGGTCTATT < 41bp 1 0.771439703802961 1 0.482334911823273 experiment 0.457120592394079 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589075 chr16:70589068 nonsynonymous SNV 0.999 1 14 hm5C_associated_SNPs_31129 0 0 1 0 1 SF3B3 chr16:70589109 5'GT 70589109 Upstream 42bp
chr16 70589068 70589068 1 + G A PAAD 70589086 + 70589066 70589106 41 TTGCCCTGACAGGAGGAGAGCTGGTCTATTTCGAGATGGAT TTACCCTGACAGGAGGAGAGCTGGTCTATTTCGAGATGGAT < 41bp 1 0.215759990032742 1 0.159055382013321 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589086 chr16:70589068 nonsynonymous SNV 0.999 1 3 hm5C_associated_SNPs_31130 0 0 1 0 1 SF3B3 chr16:70589109 5'GT 70589109 Upstream 42bp
chr3 47041693 47041693 1 + C T PAAD 47041673 + 47041653 47041693 41 CCTTTGACCTGGGCCTGGAACGGTCTAGTGTAGGATCAGGC CCTTTGACCTGGGCCTGGAACGGTCTAGTGTAGGATCAGGT < 41bp 1 0.0918587931448748 1 0.611271500587463 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041673 chr3:47041693 synonymous SNV . 0 41 hm5C_associated_SNPs_31131 0 0 1 0 1 NBEAL2 chr3:47041686 3'AG 47041686 Downstream 8bp
chr16 449418 449418 1 + C T PAAD 449415 + 449395 449435 41 TTGCCGAGCACTACCAGGACCTGCGGAGGAAGCCCTTCTAC TTGCCGAGCACTACCAGGACCTGTGGAGGAAGCCCTTCTAC < 41bp 1 0.536916388501197 1 0.364969730377197 experiment 0.926167222997606 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NME4 ENSG00000103202 CDS Human protein_coding chr16:449415 chr16:449418 nonsynonymous SNV 0.103 2 24 hm5C_associated_SNPs_31132 0 0 1 0 1 NME4 chr16:449379 3'AG 449379 Downstream 40bp
chr7 44747483 44747483 1 + C A PAAD 44747498 + 44747478 44747518 41 GTATGCCGGCCGGGACCCAGCGGCTGCTCCAGCCACCGGCA GTATGACGGCCGGGACCCAGCGGCTGCTCCAGCCACCGGCA < 41bp 1 0.785509715928632 1 0.846036672592163 experiment 0.428980568142735 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44747498 chr7:44747483 nonsynonymous SNV 0.992 2 6 hm5C_associated_SNPs_31134 0 0 1 0 1 OGDH chr7:44747478 3'AG 44747478 Downstream 6bp
chr6 118015211 118015211 1 + G A PAAD 118015223 + 118015203 118015243 41 GCCATTTGGCAGTGAAGGTGCTGTCTCCGGAAGATGGAAAA GCCATTTGACAGTGAAGGTGCTGTCTCCGGAAGATGGAAAA < 41bp 1 0.155471351598166 1 0.128177493810654 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUS1 ENSG00000153989 CDS Human protein_coding chr6:118015223 chr6:118015211 nonsynonymous SNV 0.995 0 9 hm5C_associated_SNPs_31136 0 0 0 0 1 NUS1 chr6:118015194 3'AG 118015194 Downstream 18bp
chr17 34147406 34147406 1 + C T PAAD 34147392 + 34147372 34147412 41 AGCAGAGCTCATATAGCCAGCAACCATATAATAACCAGGGA AGCAGAGCTCATATAGCCAGCAACCATATAATAATCAGGGA < 41bp 1 0.189593889859093 1 0.378010183572769 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF15 ENSG00000172660 CDS Human other chr17:34147392 chr17:34147406 nonsynonymous SNV . 0 35 hm5C_associated_SNPs_31137 0 0 1 2 2 TAF15 chr17:34147336 3'AG 34147336 Downstream 71bp
chr17 34147406 34147406 1 + C T PAAD 34147392 + 34147372 34147412 41 AGCAGAGCTCATATAGCCAGCAACCATATAATAACCAGGGA AGCAGAGCTCATATAGCCAGCAACCATATAATAATCAGGGA < 41bp 1 0.189593889859093 1 0.378010183572769 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF15 ENSG00000172660 CDS Human other chr17:34147392 chr17:34147406 nonsynonymous SNV . 0 35 hm5C_associated_SNPs_31137 0 0 1 2 2 TAF15 chr17:34147441 5'GT 34147441 Upstream 36bp
chr6 7578046 7578046 1 + G T PAAD 7578027 + 7578007 7578047 41 TGCAGGATTATGAGCTCCAGCTGGCCTCATACACCTCAGGA TGCAGGATTATGAGCTCCAGCTGGCCTCATACACCTCAGTA < 41bp 1 0.268185467475351 1 0.326664119958878 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DSP ENSG00000096696 CDS Human protein_coding chr6:7578027 chr6:7578046 nonsynonymous SNV 0.998 3 40 hm5C_associated_SNPs_31139 0 0 1 0 2 DSP chr6:7578012 3'AG 7578012 Downstream 35bp
chr6 7578046 7578046 1 + G T PAAD 7578027 + 7578007 7578047 41 TGCAGGATTATGAGCTCCAGCTGGCCTCATACACCTCAGGA TGCAGGATTATGAGCTCCAGCTGGCCTCATACACCTCAGTA < 41bp 1 0.268185467475351 1 0.326664119958878 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DSP ENSG00000096696 CDS Human protein_coding chr6:7578027 chr6:7578046 nonsynonymous SNV 0.998 3 40 hm5C_associated_SNPs_31139 0 0 1 0 2 DSP chr6:7578119 5'GT 7578119 Upstream 74bp
chr17 78335544 78335544 1 + G T PAAD 78335559 + 78335539 78335579 41 CCCAAGAAGTTCGTGGACATCTTTCAGCAGACTCCTCTGGG CCCAATAAGTTCGTGGACATCTTTCAGCAGACTCCTCTGGG < 41bp 1 0.0289496427549055 1 0.061883419752121 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78335559 chr17:78335544 nonsynonymous SNV 0.002 1 6 hm5C_associated_SNPs_31140 0 0 1 0 1 RNF213 chr17:78335534 3'AG 78335534 Downstream 11bp
chr16 89971399 89971399 1 + T C PAAD 89971393 + 89971373 89971413 41 GAACCTGTACCTTGGGAGGTCACACTTTCTCTGGAAAGAGC GAACCTGTACCTTGGGAGGTCACACTCTCTCTGGAAAGAGC < 41bp 1 0.189208903881589 1 0.154132038354874 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89971393 chr16:89971399 nonsynonymous SNV 0.927 0 27 hm5C_associated_SNPs_31141 0 0 1 0 1 TCF25 chr16:89971346 3'AG 89971346 Downstream 54bp
chr10 114918429 114918429 1 + A G PAAD 114918428 + 114918408 114918448 41 TTTGTTCTTTTTTTTCAGAACACAGCGAATGTTTCCTAAAT TTTGTTCTTTTTTTTCAGAACGCAGCGAATGTTTCCTAAAT < 41bp 1 0.328321752621418 1 0.380167990922928 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114918428 chr10:114918429 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_31142 0 0 1 0 2 TCF7L2 chr10:114918426 3'AG 114918426 Downstream 4bp
chr10 114918429 114918429 1 + A G PAAD 114918428 + 114918408 114918448 41 TTTGTTCTTTTTTTTCAGAACACAGCGAATGTTTCCTAAAT TTTGTTCTTTTTTTTCAGAACGCAGCGAATGTTTCCTAAAT < 41bp 1 0.328321752621418 1 0.380167990922928 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114918428 chr10:114918429 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_31142 0 0 1 0 2 TCF7L2 chr10:114918476 5'GT 114918476 Upstream 48bp
chr16 70589061 70589061 1 + G A PAAD 70589071 + 70589051 70589091 41 AGCGACAAGTGGTGATTGCCCTGACAGGAGGAGAGCTGGTC AGCGACAAGTAGTGATTGCCCTGACAGGAGGAGAGCTGGTC < 41bp 1 0.28463500693014 1 0.114905893802643 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589071 chr16:70589061 synonymous SNV . 0 11 hm5C_associated_SNPs_31143 0 0 1 0 1 SF3B3 chr16:70589109 5'GT 70589109 Upstream 49bp
chr7 36464161 36464161 1 + G A PAAD 36464155 + 36464135 36464175 41 TAATGCTTTATTTTTCCAGGCAAGATGTATCCAATGACTTT TAATGCTTTATTTTTCCAGGCAAGATATATCCAATGACTTT < 41bp 1 0.370863307335349 1 0.190171837806702 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36464155 chr7:36464161 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_31144 0 0 1 0 2 ANLN chr7:36464154 3'AG 36464154 Downstream 8bp
chr7 36464161 36464161 1 + G A PAAD 36464155 + 36464135 36464175 41 TAATGCTTTATTTTTCCAGGCAAGATGTATCCAATGACTTT TAATGCTTTATTTTTCCAGGCAAGATATATCCAATGACTTT < 41bp 1 0.370863307335349 1 0.190171837806702 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36464155 chr7:36464161 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_31144 0 0 1 0 2 ANLN chr7:36464202 5'GT 36464202 Upstream 42bp
chr3 128998687 128998687 1 + T C PAAD 128998697 + 128998677 128998717 41 CCCTGATAAGTACTGCCCCTCTTACAACAAGAGTCCTCAAT CCCTGATAAGCACTGCCCCTCTTACAACAAGAGTCCTCAAT < 41bp 1 0.0794513518111383 1 0.0357137322425842 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMCES ENSG00000183624 CDS Human protein_coding chr3:128998697 chr3:128998687 nonsynonymous SNV 0.777 4 11 hm5C_associated_SNPs_31145 0 0 1 0 1 HMCES chr3:128998758 5'GT 128998758 Upstream 72bp
chr11 130011402 130011402 1 + G A PAAD 130011408 + 130011388 130011428 41 TTCAGGTCATTGACGAGACTCTGGATGTTAAGGAAATGATT TTCAGGTCATTGACAAGACTCTGGATGTTAAGGAAATGATT < 41bp 1 0.783903264539677 1 0.57425594329834 experiment 0.432193470920647 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130011408 chr11:130011402 nonsynonymous SNV 0.979 4 15 hm5C_associated_SNPs_31146 0 0 1 0 2 APLP2 chr11:130011393 3'AG 130011393 Downstream 10bp
chr11 130011402 130011402 1 + G A PAAD 130011408 + 130011388 130011428 41 TTCAGGTCATTGACGAGACTCTGGATGTTAAGGAAATGATT TTCAGGTCATTGACAAGACTCTGGATGTTAAGGAAATGATT < 41bp 1 0.783903264539677 1 0.57425594329834 experiment 0.432193470920647 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130011408 chr11:130011402 nonsynonymous SNV 0.979 4 15 hm5C_associated_SNPs_31146 0 0 1 0 2 APLP2 chr11:130011467 5'GT 130011467 Upstream 66bp
chr16 3076711 3076711 1 + A G PAAD 3076699 + 3076679 3076719 41 GAGGGTCCTCCGGGGCCACACAGACTACATCCACTGCCTGG GAGGGTCCTCCGGGGCCACACAGACTACATCCGCTGCCTGG < 41bp 1 0.586545913601778 1 0.586885452270508 experiment 0.826908172796443 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control THOC6 ENSG00000131652 CDS Human protein_coding chr16:3076699 chr16:3076711 nonsynonymous SNV 0.999 3 33 hm5C_associated_SNPs_31147 0 0 1 0 2 THOC6 chr16:3076680 3'AG 3076680 Downstream 32bp
chr16 3076711 3076711 1 + A G PAAD 3076699 + 3076679 3076719 41 GAGGGTCCTCCGGGGCCACACAGACTACATCCACTGCCTGG GAGGGTCCTCCGGGGCCACACAGACTACATCCGCTGCCTGG < 41bp 1 0.586545913601778 1 0.586885452270508 experiment 0.826908172796443 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control THOC6 ENSG00000131652 CDS Human protein_coding chr16:3076699 chr16:3076711 nonsynonymous SNV 0.999 3 33 hm5C_associated_SNPs_31147 0 0 1 0 2 THOC6 chr16:3076782 5'GT 3076782 Upstream 72bp
chr9 91083296 91083296 1 + G A PAAD 91083287 + 91083267 91083307 41 TTTTTTTTTTTAATCCCCAGCGACATCTCGAATCAGCGATG TTTTTTTTTTTAATCCCCAGCGACATCTCAAATCAGCGATG < 41bp 1 0.349672445573045 1 0.543424606323242 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPIN1 ENSG00000106723 CDS Human protein_coding chr9:91083287 chr9:91083296 nonsynonymous SNV 0.620 1 30 hm5C_associated_SNPs_31148 0 0 1 0 1 SPIN1 chr9:91083287 3'AG 91083287 Downstream 10bp
chr17 48185696 48185696 1 + C T PAAD 48185699 + 48185679 48185719 41 GCAGAATGCCATGAGGGCGACTGTGGAAAGCCATGAGTCCA GCAGAATGCCATGAGGGTGACTGTGGAAAGCCATGAGTCCA < 41bp 1 0.520170147500245 1 0.122014045715332 experiment 0.959659704999509 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK2 ENSG00000005882 CDS Human protein_coding chr17:48185699 chr17:48185696 nonsynonymous SNV 0.987 4 18 hm5C_associated_SNPs_31149 0 0 1 0 2 PDK2 chr17:48185683 3'AG 48185683 Downstream 14bp
chr17 48185696 48185696 1 + C T PAAD 48185699 + 48185679 48185719 41 GCAGAATGCCATGAGGGCGACTGTGGAAAGCCATGAGTCCA GCAGAATGCCATGAGGGTGACTGTGGAAAGCCATGAGTCCA < 41bp 1 0.520170147500245 1 0.122014045715332 experiment 0.959659704999509 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK2 ENSG00000005882 CDS Human protein_coding chr17:48185699 chr17:48185696 nonsynonymous SNV 0.987 4 18 hm5C_associated_SNPs_31149 0 0 1 0 2 PDK2 chr17:48185781 5'GT 48185781 Upstream 86bp
chr19 971939 971939 1 + C T PAAD 971936 + 971916 971956 41 TCTGCTCCCAACAAAGGAGGCGGCGGCGGCGGCGGCAGCAG TCTGCTCCCAACAAAGGAGGCGGTGGCGGCGGCGGCAGCAG < 41bp 1 0.628395413407981 1 0.863049626350403 experiment 0.743209173184039 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARID3A ENSG00000116017 CDS Human protein_coding chr19:971936 chr19:971939 synonymous SNV . 0 24 hm5C_associated_SNPs_31150 0 0 0 0 1 ARID3A chr19:971878 3'AG 971878 Downstream 62bp
chr12 6979528 6979528 1 + T G PAAD 6979508 + 6979488 6979528 41 CTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGGACAT CTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGGACAG < 41bp 1 0.643608772652902 1 0.854867100715637 experiment 0.712782454694196 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979508 chr12:6979528 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_31151 0 0 0 0 1 TPI1 chr12:6979429 3'AG 6979429 Downstream 100bp
chr12 57539109 57539109 1 + G T PAAD 57539127 + 57539107 57539147 41 GAGCACGCGGCAGACCACAGCCATGGACTTCAGCTATGCCA GATCACGCGGCAGACCACAGCCATGGACTTCAGCTATGCCA < 41bp 1 0.0573043578345522 1 0.13197660446167 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57539127 chr12:57539109 nonsynonymous SNV 0.136 2 3 hm5C_associated_SNPs_31153 0 0 0 0 1 LRP1 chr12:57539010 3'AG 57539010 Downstream 100bp
chr3 39126162 39126162 1 + T G PAAD 39126143 + 39126123 39126163 41 TTTCTTTTGATAGATGTTAACTATTACTTTGGATGAAAGTG TTTCTTTTGATAGATGTTAACTATTACTTTGGATGAAAGGG < 41bp 1 0.101287410872855 1 0.139548510313034 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39126143 chr3:39126162 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_31155 0 0 1 0 2 WDR48 chr3:39126136 3'AG 39126136 Downstream 27bp
chr3 39126162 39126162 1 + T G PAAD 39126143 + 39126123 39126163 41 TTTCTTTTGATAGATGTTAACTATTACTTTGGATGAAAGTG TTTCTTTTGATAGATGTTAACTATTACTTTGGATGAAAGGG < 41bp 1 0.101287410872855 1 0.139548510313034 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39126143 chr3:39126162 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_31155 0 0 1 0 2 WDR48 chr3:39126232 5'GT 39126232 Upstream 71bp
chr4 166254711 166254711 1 + C A PAAD 166254694 + 166254674 166254714 41 CATGGGGATCCCTTATAGTTCATGAAGCCCTTTATTTCTTA CATGGGGATCCCTTATAGTTCATGAAGCCCTTTATTTATTA < 41bp 1 0.601646641427313 1 0.0392080247402191 experiment 0.796706717145373 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MSMO1 ENSG00000052802 CDS Human protein_coding chr4:166254694 chr4:166254711 nonsynonymous SNV 0.992 1 38 hm5C_associated_SNPs_31157 0 0 1 0 1 MSMO1 chr4:166254777 5'GT 166254777 Upstream 67bp
chr6 33169572 33169572 1 + C T PAAD 33169566 + 33169546 33169586 41 TCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCCCCGTGGA TCAGCAGCTCCATTTTTTGTCCTCTTTCTTATCCCCGTGGA < 41bp 1 0.17381318105984 1 0.0299323797225952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33169566 chr6:33169572 synonymous SNV . 0 27 hm5C_associated_SNPs_31158 0 0 1 0 2 SLC39A7 chr6:33169522 3'AG 33169522 Downstream 51bp
chr6 33169572 33169572 1 + C T PAAD 33169566 + 33169546 33169586 41 TCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCCCCGTGGA TCAGCAGCTCCATTTTTTGTCCTCTTTCTTATCCCCGTGGA < 41bp 1 0.17381318105984 1 0.0299323797225952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33169566 chr6:33169572 synonymous SNV . 0 27 hm5C_associated_SNPs_31158 0 0 1 0 2 SLC39A7 chr6:33169538 3'AG 33169538 Downstream 35bp
chr10 17277377 17277377 1 + C A PAAD 17277369 + 17277349 17277389 41 TTGCCACCTACAGGAAGCTGCTGGAAGGCGAGGAGAGCAGG TTGCCACCTACAGGAAGCTGCTGGAAGGAGAGGAGAGCAGG < 41bp 1 0.694288477407889 1 0.553130865097046 experiment 0.611423045184221 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277369 chr10:17277377 synonymous SNV . 0 29 hm5C_associated_SNPs_31159 0 0 1 1 1 VIM chr10:17277388 5'GT 17277388 Upstream 12bp
chr10 17277377 17277377 1 + C A PAAD 17277386 + 17277366 17277406 41 CTGCTGGAAGGCGAGGAGAGCAGGTAGGGAACTCAGACTTG CTGCTGGAAGGAGAGGAGAGCAGGTAGGGAACTCAGACTTG < 41bp 1 0.620624362997298 1 0.47293284535408 experiment 0.758751274005403 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277386 chr10:17277377 synonymous SNV . 0 12 hm5C_associated_SNPs_31160 0 0 1 1 1 VIM chr10:17277388 5'GT 17277388 Upstream 12bp
chr20 42695431 42695431 1 + A G PAAD 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAG < 41bp 1 0.444720306564623 1 0.112162441015244 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695431 nonsynonymous SNV 0.944 0 41 hm5C_associated_SNPs_31161 0 0 0 0 2 TOX2 chr20:42695370 3'AG 42695370 Downstream 62bp
chr20 42695431 42695431 1 + A G PAAD 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAG < 41bp 1 0.444720306564623 1 0.112162441015244 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695431 nonsynonymous SNV 0.944 0 41 hm5C_associated_SNPs_31161 0 0 0 0 2 TOX2 chr20:42695497 5'GT 42695497 Upstream 67bp
chr12 132334409 132334409 1 + G A PAAD 132334394 + 132334374 132334414 41 ATAACGTAGAGGAAGGATACCCGCGCCCCGTCTCCGACTTC ATAACGTAGAGGAAGGATACCCGCGCCCCGTCTCCAACTTC < 41bp 1 0.23353055060284 1 0.0622804760932922 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MMP17 ENSG00000198598 CDS Human protein_coding chr12:132334394 chr12:132334409 nonsynonymous SNV 0.972 2 36 hm5C_associated_SNPs_31162 0 0 1 0 1 MMP17 chr12:132334347 3'AG 132334347 Downstream 63bp
chr17 72239532 72239532 1 + C T PAAD 72239546 + 72239526 72239566 41 CTCCTGCTCTTTATCCTGGACCTGGTCATCTGCCTCATTGC CTCCTGTTCTTTATCCTGGACCTGGTCATCTGCCTCATTGC < 41bp 1 0.129637447425553 1 0.0502655804157257 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72239546 chr17:72239532 nonsynonymous SNV 0.989 1 7 hm5C_associated_SNPs_31163 0 0 0 0 2 TTYH2 chr17:72239513 3'AG 72239513 Downstream 20bp
chr17 72239532 72239532 1 + C T PAAD 72239546 + 72239526 72239566 41 CTCCTGCTCTTTATCCTGGACCTGGTCATCTGCCTCATTGC CTCCTGTTCTTTATCCTGGACCTGGTCATCTGCCTCATTGC < 41bp 1 0.129637447425553 1 0.0502655804157257 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72239546 chr17:72239532 nonsynonymous SNV 0.989 1 7 hm5C_associated_SNPs_31163 0 0 0 0 2 TTYH2 chr17:72239608 5'GT 72239608 Upstream 77bp
chr9 135942552 135942552 1 + C T PAAD 135942539 + 135942519 135942559 41 GGCCCAGTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGC GGCCCAGTGTCTGAAGGTTACTGATCCCCGAGCTCTGACGC < 41bp 1 0.583598649038857 1 0.0287289619445801 experiment 0.832802701922285 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942539 chr9:135942552 synonymous SNV . 0 34 hm5C_associated_SNPs_31164 0 0 1 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 78bp
chr9 135942552 135942552 1 + C T PAAD 135942544 + 135942524 135942564 41 AGTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCC AGTGTCTGAAGGTTACTGATCCCCGAGCTCTGACGCTGGCC < 41bp 1 0.37273259795368 1 0.0644303858280182 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942544 chr9:135942552 synonymous SNV . 0 29 hm5C_associated_SNPs_31165 0 0 1 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 78bp
chr9 135942552 135942552 1 + C T PAAD 135942545 + 135942525 135942565 41 GTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCCT GTGTCTGAAGGTTACTGATCCCCGAGCTCTGACGCTGGCCT < 41bp 1 0.670988031755233 1 0.0818633437156677 experiment 0.658023936489534 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942545 chr9:135942552 synonymous SNV . 0 28 hm5C_associated_SNPs_31166 0 0 1 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 78bp
chr9 135942552 135942552 1 + C T PAAD 135942546 + 135942526 135942566 41 TGTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCCTA TGTCTGAAGGTTACTGATCCCCGAGCTCTGACGCTGGCCTA < 41bp 1 0.64435846875214 1 0.493568241596222 experiment 0.711283062495721 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942546 chr9:135942552 synonymous SNV . 0 27 hm5C_associated_SNPs_31167 0 0 1 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 78bp
chr9 135942552 135942552 1 + C T PAAD 135942547 + 135942527 135942567 41 GTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCCTAT GTCTGAAGGTTACTGATCCCCGAGCTCTGACGCTGGCCTAT < 41bp 1 0.701570489831429 1 0.737374246120453 experiment 0.596859020337141 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942547 chr9:135942552 synonymous SNV . 0 26 hm5C_associated_SNPs_31168 0 0 1 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 78bp
chr9 135942552 135942552 1 + C T PAAD 135942553 + 135942533 135942573 41 AGGTTACTGATCCCCGAGCCCTGACGCTGGCCTATAAGGTG AGGTTACTGATCCCCGAGCTCTGACGCTGGCCTATAAGGTG < 41bp 1 0.428687501986409 1 0.352810949087143 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135942553 chr9:135942552 synonymous SNV . 0 20 hm5C_associated_SNPs_31169 0 0 1 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 78bp
chr1 224380108 224380108 1 + T G PAAD 224380097 + 224380077 224380117 41 ACAATTCCTGGATAAAAGTACTGTATGATTTTGTGATGGAT ACAATTCCTGGATAAAAGTACTGTATGATTTGGTGATGGAT < 41bp 1 0.338135393932189 1 0.129823803901672 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEGS1 ENSG00000143753 CDS Human protein_coding chr1:224380097 chr1:224380108 nonsynonymous SNV 0.998 4 32 hm5C_associated_SNPs_31170 0 0 1 0 1 DEGS1 chr1:224380034 3'AG 224380034 Downstream 75bp
chr5 34949740 34949740 1 + G A PAAD 34949743 + 34949723 34949763 41 GAGAGAAGAGATGGAGAGAGCGAGCACAAATGTGCCAAAAT GAGAGAAGAGATGGAGAAAGCGAGCACAAATGTGCCAAAAT < 41bp 1 0.566862438898142 1 0.830605745315552 experiment 0.866275122203716 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34949743 chr5:34949740 synonymous SNV . 0 18 hm5C_associated_SNPs_31172 0 0 0 0 2 DNAJC21 chr5:34949648 3'AG 34949648 Downstream 93bp
chr5 34949740 34949740 1 + G A PAAD 34949743 + 34949723 34949763 41 GAGAGAAGAGATGGAGAGAGCGAGCACAAATGTGCCAAAAT GAGAGAAGAGATGGAGAAAGCGAGCACAAATGTGCCAAAAT < 41bp 1 0.566862438898142 1 0.830605745315552 experiment 0.866275122203716 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34949743 chr5:34949740 synonymous SNV . 0 18 hm5C_associated_SNPs_31172 0 0 0 0 2 DNAJC21 chr5:34949782 5'GT 34949782 Upstream 43bp
chr16 1817158 1817158 1 + T C PAAD 1817164 + 1817144 1817184 41 CTCCAGATGGCCAGTGGGATCTGAGCAACTATCACCTAATG CTCCAGATGGCCAGCGGGATCTGAGCAACTATCACCTAATG < 41bp 1 0.528683065200284 1 0.436024248600006 experiment 0.942633869599431 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1817164 chr16:1817158 nonsynonymous SNV 0.996 4 15 hm5C_associated_SNPs_31173 0 0 1 0 1 MAPK8IP3 chr16:1817150 3'AG 1817150 Downstream 9bp
chr11 811728 811728 1 + G A PAAD 811709 + 811689 811729 41 CCTAATCCCTGCCGGTCCATCTGTGGCCTGCCAGGTTTCGC CCTAATCCCTGCCGGTCCATCTGTGGCCTGCCAGGTTTCAC < 41bp 1 0.339886553053265 1 0.264034748077393 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA52 ENSG00000199785 ncRNA_exonic Human protein_coding chr11:811709 chr11:811728 . . 0 40 hm5C_associated_SNPs_31174 0 0 1 0 1 RPLP2 chr11:811645 3'AG 811645 Downstream 84bp
chr11 811728 811728 1 + G A PAAD 811715 + 811695 811735 41 CCCTGCCGGTCCATCTGTGGCCTGCCAGGTTTCGCTTGTGG CCCTGCCGGTCCATCTGTGGCCTGCCAGGTTTCACTTGTGG < 41bp 1 0.0334614522982357 1 0.0570579767227173 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA52 ENSG00000199785 ncRNA_exonic Human protein_coding chr11:811715 chr11:811728 . . 0 34 hm5C_associated_SNPs_31175 0 0 1 0 1 RPLP2 chr11:811645 3'AG 811645 Downstream 84bp
chr11 811728 811728 1 + G A PAAD 811716 + 811696 811736 41 CCTGCCGGTCCATCTGTGGCCTGCCAGGTTTCGCTTGTGGA CCTGCCGGTCCATCTGTGGCCTGCCAGGTTTCACTTGTGGA < 41bp 1 0.117113898468017 1 0.0553843379020691 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA52 ENSG00000199785 ncRNA_exonic Human protein_coding chr11:811716 chr11:811728 . . 0 33 hm5C_associated_SNPs_31176 0 0 1 0 1 RPLP2 chr11:811645 3'AG 811645 Downstream 84bp
chr16 718508 718508 1 + G T PAAD 718514 + 718494 718534 41 CCCCGCGCGGAGGAGATCACCATCCCCGCGGACGTCACCCC CCCCGCGCGGAGGATATCACCATCCCCGCGGACGTCACCCC < 41bp 1 0.316811524730536 1 0.530578315258026 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:718514 chr16:718508 nonsynonymous SNV 0.847 2 15 hm5C_associated_SNPs_31178 0 0 1 0 2 RHOT2 chr16:718488 3'AG 718488 Downstream 21bp
chr16 718508 718508 1 + G T PAAD 718514 + 718494 718534 41 CCCCGCGCGGAGGAGATCACCATCCCCGCGGACGTCACCCC CCCCGCGCGGAGGATATCACCATCCCCGCGGACGTCACCCC < 41bp 1 0.316811524730536 1 0.530578315258026 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:718514 chr16:718508 nonsynonymous SNV 0.847 2 15 hm5C_associated_SNPs_31178 0 0 1 0 2 RHOT2 chr16:718569 5'GT 718569 Upstream 62bp
chr5 177034312 177034312 1 + G A PAAD 177034319 + 177034299 177034339 41 ACAGGTTCAACCGGGCAGCGCTCATCAACGTGGGCTTCCTG ACAGGTTCAACCGAGCAGCGCTCATCAACGTGGGCTTCCTG < 41bp 1 0.162430679704933 1 0.0231880247592926 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control B4GALT7 ENSG00000027847 CDS Human protein_coding chr5:177034319 chr5:177034312 nonsynonymous SNV . 0 14 hm5C_associated_SNPs_31179 0 0 1 0 1 B4GALT7 chr5:177034303 3'AG 177034303 Downstream 10bp
chr3 183899752 183899752 1 + C T PAAD 183899733 + 183899713 183899753 41 AAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAGTGCG AAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAGTGTG < 41bp 1 0.657918158014754 1 0.661724507808685 experiment 0.684163683970493 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899733 chr3:183899752 stopgain 0.996 1 40 hm5C_associated_SNPs_31180 0 0 1 0 2 AP2M1 chr3:183899700 3'AG 183899700 Downstream 53bp
chr3 183899752 183899752 1 + C T PAAD 183899733 + 183899713 183899753 41 AAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAGTGCG AAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAGTGTG < 41bp 1 0.657918158014754 1 0.661724507808685 experiment 0.684163683970493 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899733 chr3:183899752 stopgain 0.996 1 40 hm5C_associated_SNPs_31180 0 0 1 0 2 AP2M1 chr3:183899835 5'GT 183899835 Upstream 84bp
chr5 154179551 154179551 1 + G A PAAD 154179534 + 154179514 154179554 41 AGGGCCTGTCTGCCAGCCTGCCTGACCTGGATTCTGAGAAC AGGGCCTGTCTGCCAGCCTGCCTGACCTGGATTCTGAAAAC < 41bp 1 0.248512141118947 1 0.0679100453853607 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154179534 chr5:154179551 synonymous SNV . 0 38 hm5C_associated_SNPs_31181 0 0 1 0 1 LARP1 chr5:154179602 5'GT 154179602 Upstream 52bp
chr9 139563096 139563096 1 + C T PAAD 139563111 + 139563091 139563131 41 ACCTGCGACGGGCACCGGGCCTGCAGCACCTACCGGTGAGT ACCTGTGACGGGCACCGGGCCTGCAGCACCTACCGGTGAGT < 41bp 1 0.69673302067882 1 0.104153662919998 experiment 0.60653395864236 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EGFL7 ENSG00000172889 CDS Human protein_coding chr9:139563111 chr9:139563096 synonymous SNV . 0 6 hm5C_associated_SNPs_31182 0 0 1 0 2 EGFL7 chr9:139563009 3'AG 139563009 Downstream 88bp
chr9 139563096 139563096 1 + C T PAAD 139563111 + 139563091 139563131 41 ACCTGCGACGGGCACCGGGCCTGCAGCACCTACCGGTGAGT ACCTGTGACGGGCACCGGGCCTGCAGCACCTACCGGTGAGT < 41bp 1 0.69673302067882 1 0.104153662919998 experiment 0.60653395864236 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EGFL7 ENSG00000172889 CDS Human protein_coding chr9:139563111 chr9:139563096 synonymous SNV . 0 6 hm5C_associated_SNPs_31182 0 0 1 0 2 EGFL7 chr9:139563125 5'GT 139563125 Upstream 30bp
chr9 140167012 140167012 1 + G A PAAD 140167018 + 140166998 140167038 41 TCACCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGT TCACCTGCACCCCAAGGTGGCCCCGTCTAAGCTGGAGGCGT < 41bp 1 0.283104321058134 1 0.0666371583938599 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167018 chr9:140167012 nonsynonymous SNV 0.676 1 15 hm5C_associated_SNPs_31185 0 0 1 0 2 NELFB chr9:140166959 3'AG 140166959 Downstream 54bp
chr9 140167012 140167012 1 + G A PAAD 140167018 + 140166998 140167038 41 TCACCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGT TCACCTGCACCCCAAGGTGGCCCCGTCTAAGCTGGAGGCGT < 41bp 1 0.283104321058134 1 0.0666371583938599 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167018 chr9:140167012 nonsynonymous SNV 0.676 1 15 hm5C_associated_SNPs_31185 0 0 1 0 2 NELFB chr9:140167067 5'GT 140167067 Upstream 56bp
chr9 140167012 140167012 1 + G A PAAD 140167019 + 140166999 140167039 41 CACCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGTT CACCTGCACCCCAAGGTGGCCCCGTCTAAGCTGGAGGCGTT < 41bp 1 0.251733060863961 1 0.128040313720703 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167019 chr9:140167012 nonsynonymous SNV 0.676 1 14 hm5C_associated_SNPs_31186 0 0 1 0 2 NELFB chr9:140166959 3'AG 140166959 Downstream 54bp
chr9 140167012 140167012 1 + G A PAAD 140167019 + 140166999 140167039 41 CACCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGTT CACCTGCACCCCAAGGTGGCCCCGTCTAAGCTGGAGGCGTT < 41bp 1 0.251733060863961 1 0.128040313720703 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167019 chr9:140167012 nonsynonymous SNV 0.676 1 14 hm5C_associated_SNPs_31186 0 0 1 0 2 NELFB chr9:140167067 5'GT 140167067 Upstream 56bp
chr9 140167012 140167012 1 + G A PAAD 140167020 + 140167000 140167040 41 ACCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGTTG ACCTGCACCCCAAGGTGGCCCCGTCTAAGCTGGAGGCGTTG < 41bp 1 0.089696022048601 1 0.0895507633686066 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167020 chr9:140167012 nonsynonymous SNV 0.676 1 13 hm5C_associated_SNPs_31187 0 0 1 0 2 NELFB chr9:140166959 3'AG 140166959 Downstream 54bp
chr9 140167012 140167012 1 + G A PAAD 140167020 + 140167000 140167040 41 ACCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGTTG ACCTGCACCCCAAGGTGGCCCCGTCTAAGCTGGAGGCGTTG < 41bp 1 0.089696022048601 1 0.0895507633686066 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167020 chr9:140167012 nonsynonymous SNV 0.676 1 13 hm5C_associated_SNPs_31187 0 0 1 0 2 NELFB chr9:140167067 5'GT 140167067 Upstream 56bp
chr9 140167012 140167012 1 + G A PAAD 140167021 + 140167001 140167041 41 CCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGTTGC CCTGCACCCCAAGGTGGCCCCGTCTAAGCTGGAGGCGTTGC < 41bp 1 0.279340717710916 1 0.161710500717163 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167021 chr9:140167012 nonsynonymous SNV 0.676 1 12 hm5C_associated_SNPs_31188 0 0 1 0 2 NELFB chr9:140166959 3'AG 140166959 Downstream 54bp
chr9 140167012 140167012 1 + G A PAAD 140167021 + 140167001 140167041 41 CCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGTTGC CCTGCACCCCAAGGTGGCCCCGTCTAAGCTGGAGGCGTTGC < 41bp 1 0.279340717710916 1 0.161710500717163 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167021 chr9:140167012 nonsynonymous SNV 0.676 1 12 hm5C_associated_SNPs_31188 0 0 1 0 2 NELFB chr9:140167067 5'GT 140167067 Upstream 56bp
chr10 49639287 49639287 1 + T G PAAD 49639298 + 49639278 49639318 41 AGAATGGAGTTATACGGGGGCAGCCCTCTCCTTTAGGTTGG AGAATGGAGGTATACGGGGGCAGCCCTCTCCTTTAGGTTGG < 41bp 1 0.319962513639448 1 0.219493687152863 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8 ENSG00000107643 CDS Human protein_coding chr10:49639298 chr10:49639287 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_31189 0 0 1 0 2 MAPK8 chr10:49639236 3'AG 49639236 Downstream 52bp
chr10 49639287 49639287 1 + T G PAAD 49639298 + 49639278 49639318 41 AGAATGGAGTTATACGGGGGCAGCCCTCTCCTTTAGGTTGG AGAATGGAGGTATACGGGGGCAGCCCTCTCCTTTAGGTTGG < 41bp 1 0.319962513639448 1 0.219493687152863 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8 ENSG00000107643 CDS Human protein_coding chr10:49639298 chr10:49639287 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_31189 0 0 1 0 2 MAPK8 chr10:49639313 5'GT 49639313 Upstream 27bp
chr19 3192496 3192496 1 + G A PAAD 3192510 + 3192490 3192530 41 CACGGAGGCGCGCACGATGGCGGCGGAGGTGCTGAGCCGCC CACGGAAGCGCGCACGATGGCGGCGGAGGTGCTGAGCCGCC < 41bp 1 0.776697459166022 1 0.838794112205505 experiment 0.446605081667957 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCLN ENSG00000125912 CDS Human protein_coding chr19:3192510 chr19:3192496 synonymous SNV . 0 7 hm5C_associated_SNPs_31190 0 0 0 0 1 NCLN chr19:3192468 3'AG 3192468 Downstream 29bp
chr19 3192496 3192496 1 + G A PAAD 3192513 + 3192493 3192533 41 GGAGGCGCGCACGATGGCGGCGGAGGTGCTGAGCCGCCGCT GGAAGCGCGCACGATGGCGGCGGAGGTGCTGAGCCGCCGCT < 41bp 1 0.722561979441892 1 0.766362905502319 experiment 0.554876041116215 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCLN ENSG00000125912 CDS Human protein_coding chr19:3192513 chr19:3192496 synonymous SNV . 0 4 hm5C_associated_SNPs_31191 0 0 0 0 1 NCLN chr19:3192468 3'AG 3192468 Downstream 29bp
chr19 45762366 45762366 1 + C T PAAD 45762352 + 45762332 45762372 41 TCGCCTCCTGTCCCGAGGAGCAGCCCCACGTGGGCAACTAC TCGCCTCCTGTCCCGAGGAGCAGCCCCACGTGGGTAACTAC < 41bp 1 0.193373711579269 1 0.672901034355164 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45762352 chr19:45762366 synonymous SNV . 0 35 hm5C_associated_SNPs_31192 0 0 1 0 1 MARK4 chr19:45762447 5'GT 45762447 Upstream 82bp
chr3 190347219 190347219 1 + G A PAAD 190347220 + 190347200 190347240 41 ACCTCTGAGGATCTCAAGCGCAGCTATGTCTGTCATGCTAG ACCTCTGAGGATCTCAAGCACAGCTATGTCTGTCATGCTAG < 41bp 1 0.449366307863526 1 0.149909615516663 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient IL1RAP ENSG00000196083 CDS Human protein_coding chr3:190347220 chr3:190347219 nonsynonymous SNV 0.987 3 20 hm5C_associated_SNPs_31196 0 0 1 0 2 IL1RAP chr3:190347139 3'AG 190347139 Downstream 81bp
chr3 190347219 190347219 1 + G A PAAD 190347220 + 190347200 190347240 41 ACCTCTGAGGATCTCAAGCGCAGCTATGTCTGTCATGCTAG ACCTCTGAGGATCTCAAGCACAGCTATGTCTGTCATGCTAG < 41bp 1 0.449366307863526 1 0.149909615516663 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient IL1RAP ENSG00000196083 CDS Human protein_coding chr3:190347220 chr3:190347219 nonsynonymous SNV 0.987 3 20 hm5C_associated_SNPs_31196 0 0 1 0 2 IL1RAP chr3:190347287 5'GT 190347287 Upstream 69bp
chr1 11718605 11718605 1 + C A PAAD 11718593 + 11718573 11718613 41 CCTCTGCCTGCCCCCAGCACCTGCCTCAAGTCCCAGGTGGT CCTCTGCCTGCCCCCAGCACCTGCCTCAAGTCACAGGTGGT < 41bp 1 0.214368863977974 1 0.0770134627819061 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718593 chr1:11718605 nonsynonymous SNV 1.000 0 33 hm5C_associated_SNPs_31197 0 0 1 2 2 FBXO44 chr1:11718590 3'AG 11718590 Downstream 16bp
chr1 11718605 11718605 1 + C A PAAD 11718593 + 11718573 11718613 41 CCTCTGCCTGCCCCCAGCACCTGCCTCAAGTCCCAGGTGGT CCTCTGCCTGCCCCCAGCACCTGCCTCAAGTCACAGGTGGT < 41bp 1 0.214368863977974 1 0.0770134627819061 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718593 chr1:11718605 nonsynonymous SNV 1.000 0 33 hm5C_associated_SNPs_31197 0 0 1 2 2 FBXO44 chr1:11718685 5'GT 11718685 Upstream 81bp
chr9 123898163 123898163 1 + G T PAAD 123898159 + 123898139 123898179 41 TGCAGCAGACCCAGGGAGATCTCAGTGCCTATGAAGCTGAG TGCAGCAGACCCAGGGAGATCTCATTGCCTATGAAGCTGAG < 41bp 1 0.451911048689186 1 0.411755383014679 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNTRL ENSG00000119397 CDS Human protein_coding chr9:123898159 chr9:123898163 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_31198 0 0 1 0 2 CNTRL chr9:123898084 3'AG 123898084 Downstream 80bp
chr9 123898163 123898163 1 + G T PAAD 123898159 + 123898139 123898179 41 TGCAGCAGACCCAGGGAGATCTCAGTGCCTATGAAGCTGAG TGCAGCAGACCCAGGGAGATCTCATTGCCTATGAAGCTGAG < 41bp 1 0.451911048689186 1 0.411755383014679 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNTRL ENSG00000119397 CDS Human protein_coding chr9:123898159 chr9:123898163 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_31198 0 0 1 0 2 CNTRL chr9:123898260 5'GT 123898260 Upstream 98bp
chr11 64022436 64022436 1 + A G PAAD 64022456 + 64022436 64022476 41 ACGGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTT GCGGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTT < 41bp 1 0.375638058008729 1 0.108093112707138 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022456 chr11:64022436 nonsynonymous SNV 0.998 4 1 hm5C_associated_SNPs_31199 0 0 1 0 3 PLCB3 chr11:64022370 3'AG 64022370 Downstream 67bp
chr11 64022436 64022436 1 + A G PAAD 64022456 + 64022436 64022476 41 ACGGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTT GCGGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTT < 41bp 1 0.375638058008729 1 0.108093112707138 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022456 chr11:64022436 nonsynonymous SNV 0.998 4 1 hm5C_associated_SNPs_31199 0 0 1 0 3 PLCB3 chr11:64022424 3'AG 64022424 Downstream 13bp
chr11 64022436 64022436 1 + A G PAAD 64022456 + 64022436 64022476 41 ACGGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTT GCGGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTT < 41bp 1 0.375638058008729 1 0.108093112707138 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022456 chr11:64022436 nonsynonymous SNV 0.998 4 1 hm5C_associated_SNPs_31199 0 0 1 0 3 PLCB3 chr11:64022510 5'GT 64022510 Upstream 75bp
chr5 118861665 118861665 1 + C T PAAD 118861674 + 118861654 118861694 41 TTTCTGCCAGGCGTGTGTTACAGCAGTTTGCAGATAATGAT TTTCTGCCAGGTGTGTGTTACAGCAGTTTGCAGATAATGAT < 41bp 1 0.727596664772787 1 0.106911063194275 experiment 0.544806670454426 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118861674 chr5:118861665 nonsynonymous SNV 0.996 3 12 hm5C_associated_SNPs_31200 0 0 1 0 2 HSD17B4 chr5:118861612 3'AG 118861612 Downstream 54bp
chr5 118861665 118861665 1 + C T PAAD 118861674 + 118861654 118861694 41 TTTCTGCCAGGCGTGTGTTACAGCAGTTTGCAGATAATGAT TTTCTGCCAGGTGTGTGTTACAGCAGTTTGCAGATAATGAT < 41bp 1 0.727596664772787 1 0.106911063194275 experiment 0.544806670454426 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118861674 chr5:118861665 nonsynonymous SNV 0.996 3 12 hm5C_associated_SNPs_31200 0 0 1 0 2 HSD17B4 chr5:118861718 5'GT 118861718 Upstream 54bp
chr8 17055101 17055101 1 + C A PAAD 17055095 + 17055075 17055115 41 AGCTTTTTGTCCCTAGCCATCCGATACTGTGACAGATGCCA AGCTTTTTGTCCCTAGCCATCCGATAATGTGACAGATGCCA < 41bp 1 0.172175989217895 1 0.154590457677841 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZDHHC2 ENSG00000104219 CDS Human protein_coding chr8:17055095 chr8:17055101 stopgain 0.997 0 27 hm5C_associated_SNPs_31201 0 0 1 0 2 ZDHHC2 chr8:17055091 3'AG 17055091 Downstream 11bp
chr8 17055101 17055101 1 + C A PAAD 17055095 + 17055075 17055115 41 AGCTTTTTGTCCCTAGCCATCCGATACTGTGACAGATGCCA AGCTTTTTGTCCCTAGCCATCCGATAATGTGACAGATGCCA < 41bp 1 0.172175989217895 1 0.154590457677841 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZDHHC2 ENSG00000104219 CDS Human protein_coding chr8:17055095 chr8:17055101 stopgain 0.997 0 27 hm5C_associated_SNPs_31201 0 0 1 0 2 ZDHHC2 chr8:17055160 5'GT 17055160 Upstream 60bp
chr12 122620057 122620057 1 + C A PAAD 122620047 + 122620027 122620067 41 TCACTGCAGGCTCCTGGGGTCCCGGAGTTCCACAGCAGCAT TCACTGCAGGCTCCTGGGGTCCCGGAGTTCAACAGCAGCAT < 41bp 1 0.359711644044456 1 0.194821268320084 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MLXIP ENSG00000175727 CDS Human protein_coding chr12:122620047 chr12:122620057 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_31202 0 0 1 0 1 MLXIP chr12:122620036 3'AG 122620036 Downstream 22bp
chr6 133844298 133844298 1 + A G PAAD 133844283 + 133844263 133844303 41 TAGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTG TAGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTGCAGTG < 41bp 1 0.0987535336932701 1 0.54431563615799 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844283 chr6:133844298 nonsynonymous SNV 1.000 5 36 hm5C_associated_SNPs_31203 0 0 0 0 1 EYA4 chr6:133844315 5'GT 133844315 Upstream 18bp
chr6 133844298 133844298 1 + A G PAAD 133844284 + 133844264 133844304 41 AGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTGC AGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTGCAGTGC < 41bp 1 0.105979290928745 1 0.172400593757629 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844284 chr6:133844298 nonsynonymous SNV 1.000 5 35 hm5C_associated_SNPs_31204 0 0 0 0 1 EYA4 chr6:133844315 5'GT 133844315 Upstream 18bp
chr16 85691142 85691142 1 + G A PAAD 85691160 + 85691140 85691180 41 GAGCAGCACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGA GAACAGCACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGA < 41bp 1 0.360861439006254 1 0.631797909736633 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691160 chr16:85691142 synonymous SNV . 0 3 hm5C_associated_SNPs_31206 0 0 1 0 1 GSE1 chr16:85691210 5'GT 85691210 Upstream 69bp
chr16 85691142 85691142 1 + G A PAAD 85691161 + 85691141 85691181 41 AGCAGCACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGAG AACAGCACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGAG < 41bp 1 0.320902038963429 1 0.572735965251923 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691161 chr16:85691142 synonymous SNV . 0 2 hm5C_associated_SNPs_31207 0 0 1 0 1 GSE1 chr16:85691210 5'GT 85691210 Upstream 69bp
chr14 60591898 60591898 1 + G A PAAD 60591886 + 60591866 60591906 41 GGTCATATATTGAGAGTTTACGGTGGTGTTTTGCCTTGGTC GGTCATATATTGAGAGTTTACGGTGGTGTTTTACCTTGGTC < 41bp 1 0.753300502203029 1 0.759433567523956 experiment 0.493398995593941 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60591886 chr14:60591898 synonymous SNV . 0 33 hm5C_associated_SNPs_31209 0 0 1 0 1 PCNX4 chr14:60591969 5'GT 60591969 Upstream 72bp
chr1 114215988 114215988 1 + C T PAAD 114215980 + 114215960 114216000 41 CAGTAGAGCTGGAGAGAGGCCCCCGGGGCTTTGGATTCAGC CAGTAGAGCTGGAGAGAGGCCCCCGGGGTTTTGGATTCAGC < 41bp 1 0.232614018699562 1 0.280666053295135 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAGI3 ENSG00000081026 CDS Human protein_coding chr1:114215980 chr1:114215988 synonymous SNV . 0 29 hm5C_associated_SNPs_31210 0 0 0 0 2 MAGI3 chr1:114215944 3'AG 114215944 Downstream 45bp
chr1 114215988 114215988 1 + C T PAAD 114215980 + 114215960 114216000 41 CAGTAGAGCTGGAGAGAGGCCCCCGGGGCTTTGGATTCAGC CAGTAGAGCTGGAGAGAGGCCCCCGGGGTTTTGGATTCAGC < 41bp 1 0.232614018699562 1 0.280666053295135 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAGI3 ENSG00000081026 CDS Human protein_coding chr1:114215980 chr1:114215988 synonymous SNV . 0 29 hm5C_associated_SNPs_31210 0 0 0 0 2 MAGI3 chr1:114216087 5'GT 114216087 Upstream 100bp
chr5 85915251 85915251 1 + T G PAAD 85915269 + 85915249 85915289 41 CCTTCCTTGTAGTAAGACACCAACTGCTTAAAACATAAGGA CCGTCCTTGTAGTAAGACACCAACTGCTTAAAACATAAGGA < 41bp 1 0.334243020882418 1 0.402180016040802 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COX7C ENSG00000127184 CDS Human protein_coding chr5:85915269 chr5:85915251 nonsynonymous SNV 0.495 4 3 hm5C_associated_SNPs_31211 0 0 1 0 2 COX7C chr5:85915170 3'AG 85915170 Downstream 82bp
chr5 85915251 85915251 1 + T G PAAD 85915269 + 85915249 85915289 41 CCTTCCTTGTAGTAAGACACCAACTGCTTAAAACATAAGGA CCGTCCTTGTAGTAAGACACCAACTGCTTAAAACATAAGGA < 41bp 1 0.334243020882418 1 0.402180016040802 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COX7C ENSG00000127184 CDS Human protein_coding chr5:85915269 chr5:85915251 nonsynonymous SNV 0.495 4 3 hm5C_associated_SNPs_31211 0 0 1 0 2 COX7C chr5:85915313 5'GT 85915313 Upstream 63bp
chr8 22037910 22037910 1 + G A PAAD 22037894 + 22037874 22037914 41 CTCACAGCCTGTGGAGAGACCCTGCAAGACAGCACAGGCAA CTCACAGCCTGTGGAGAGACCCTGCAAGACAGCACAAGCAA < 41bp 1 0.0957397087101628 1 0.318967431783676 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037894 chr8:22037910 nonsynonymous SNV 0.985 3 37 hm5C_associated_SNPs_31216 0 0 0 0 2 BMP1 chr8:22037881 3'AG 22037881 Downstream 30bp
chr8 22037910 22037910 1 + G A PAAD 22037894 + 22037874 22037914 41 CTCACAGCCTGTGGAGAGACCCTGCAAGACAGCACAGGCAA CTCACAGCCTGTGGAGAGACCCTGCAAGACAGCACAAGCAA < 41bp 1 0.0957397087101628 1 0.318967431783676 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037894 chr8:22037910 nonsynonymous SNV 0.985 3 37 hm5C_associated_SNPs_31216 0 0 0 0 2 BMP1 chr8:22037996 5'GT 22037996 Upstream 87bp
chr16 3076719 3076719 1 + G A PAAD 3076699 + 3076679 3076719 41 GAGGGTCCTCCGGGGCCACACAGACTACATCCACTGCCTGG GAGGGTCCTCCGGGGCCACACAGACTACATCCACTGCCTGA < 41bp 1 0.568430034392289 1 0.456067770719528 experiment 0.863139931215422 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control THOC6 ENSG00000131652 CDS Human protein_coding chr16:3076699 chr16:3076719 nonsynonymous SNV 0.989 1 41 hm5C_associated_SNPs_31217 0 0 1 0 2 THOC6 chr16:3076680 3'AG 3076680 Downstream 40bp
chr16 3076719 3076719 1 + G A PAAD 3076699 + 3076679 3076719 41 GAGGGTCCTCCGGGGCCACACAGACTACATCCACTGCCTGG GAGGGTCCTCCGGGGCCACACAGACTACATCCACTGCCTGA < 41bp 1 0.568430034392289 1 0.456067770719528 experiment 0.863139931215422 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control THOC6 ENSG00000131652 CDS Human protein_coding chr16:3076699 chr16:3076719 nonsynonymous SNV 0.989 1 41 hm5C_associated_SNPs_31217 0 0 1 0 2 THOC6 chr16:3076782 5'GT 3076782 Upstream 64bp
chr11 64137787 64137787 1 + G A PAAD 64137798 + 64137778 64137818 41 AAAATCCGCGAGGGGCGCTTCTCCCTTGACGGGGAGGCCTG AAAATCCGCAAGGGGCGCTTCTCCCTTGACGGGGAGGCCTG < 41bp 1 0.427217041273108 1 0.356209129095078 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137798 chr11:64137787 nonsynonymous SNV 0.991 1 10 hm5C_associated_SNPs_31218 0 0 0 0 3 RPS6KA4 chr11:64137697 3'AG 64137697 Downstream 91bp
chr11 64137787 64137787 1 + G A PAAD 64137798 + 64137778 64137818 41 AAAATCCGCGAGGGGCGCTTCTCCCTTGACGGGGAGGCCTG AAAATCCGCAAGGGGCGCTTCTCCCTTGACGGGGAGGCCTG < 41bp 1 0.427217041273108 1 0.356209129095078 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137798 chr11:64137787 nonsynonymous SNV 0.991 1 10 hm5C_associated_SNPs_31218 0 0 0 0 3 RPS6KA4 chr11:64137760 3'AG 64137760 Downstream 28bp
chr11 64137787 64137787 1 + G A PAAD 64137798 + 64137778 64137818 41 AAAATCCGCGAGGGGCGCTTCTCCCTTGACGGGGAGGCCTG AAAATCCGCAAGGGGCGCTTCTCCCTTGACGGGGAGGCCTG < 41bp 1 0.427217041273108 1 0.356209129095078 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137798 chr11:64137787 nonsynonymous SNV 0.991 1 10 hm5C_associated_SNPs_31218 0 0 0 0 3 RPS6KA4 chr11:64137856 5'GT 64137856 Upstream 70bp
chr12 112579955 112579955 1 + G T PAAD 112579938 + 112579918 112579958 41 GAATAGAGGCCAACAGCCCCCCAAAGAGGGTGGTGAAGAGA GAATAGAGGCCAACAGCCCCCCAAAGAGGGTGGTGAATAGA < 41bp 1 0.270896563673576 1 0.307587116956711 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112579938 chr12:112579955 stopgain 0.708 0 38 hm5C_associated_SNPs_31220 0 0 0 0 1 TRAFD1 chr12:112579893 3'AG 112579893 Downstream 63bp
chr3 42685488 42685488 1 + C T PAAD 42685493 + 42685473 42685513 41 AGAAGTTATAATCGGCGGTCCAGGTGGGTCTCTCTCCTTTA AGAAGTTATAATCGGTGGTCCAGGTGGGTCTCTCTCCTTTA < 41bp 1 0.546683847061769 1 0.6304070353508 experiment 0.906632305876461 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NKTR ENSG00000114857 CDS Human antisense chr3:42685493 chr3:42685488 nonsynonymous SNV 0.994 0 16 hm5C_associated_SNPs_31221 0 0 1 0 3 NKTR chr3:42685391 3'AG 42685391 Downstream 98bp
chr3 42685488 42685488 1 + C T PAAD 42685493 + 42685473 42685513 41 AGAAGTTATAATCGGCGGTCCAGGTGGGTCTCTCTCCTTTA AGAAGTTATAATCGGTGGTCCAGGTGGGTCTCTCTCCTTTA < 41bp 1 0.546683847061769 1 0.6304070353508 experiment 0.906632305876461 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NKTR ENSG00000114857 CDS Human protein_coding chr3:42685493 chr3:42685488 nonsynonymous SNV 0.994 0 16 hm5C_associated_SNPs_31221 0 0 1 0 3 NKTR chr3:42685394 3'AG 42685394 Downstream 95bp
chr3 42685488 42685488 1 + C T PAAD 42685493 + 42685473 42685513 41 AGAAGTTATAATCGGCGGTCCAGGTGGGTCTCTCTCCTTTA AGAAGTTATAATCGGTGGTCCAGGTGGGTCTCTCTCCTTTA < 41bp 1 0.546683847061769 1 0.6304070353508 experiment 0.906632305876461 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NKTR ENSG00000114857 CDS Human protein_coding chr3:42685493 chr3:42685488 nonsynonymous SNV 0.994 0 16 hm5C_associated_SNPs_31221 0 0 1 0 3 NKTR chr3:42685495 5'GT 42685495 Upstream 8bp
chr1 155582030 155582030 1 + G A PAAD 155582039 + 155582019 155582059 41 GCGCGAAGGCGGCAGAGCTGCTACAAGATGAATATTCAGGG GCGCGAAGGCGACAGAGCTGCTACAAGATGAATATTCAGGG < 41bp 1 0.731997251159928 1 0.334627389907837 experiment 0.536005497680144 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582039 chr1:155582030 nonsynonymous SNV 0.257 0 12 hm5C_associated_SNPs_31223 0 0 0 0 2 MSTO1 chr1:155581973 3'AG 155581973 Downstream 58bp
chr1 155582030 155582030 1 + G A PAAD 155582039 + 155582019 155582059 41 GCGCGAAGGCGGCAGAGCTGCTACAAGATGAATATTCAGGG GCGCGAAGGCGACAGAGCTGCTACAAGATGAATATTCAGGG < 41bp 1 0.731997251159928 1 0.334627389907837 experiment 0.536005497680144 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582039 chr1:155582030 nonsynonymous SNV 0.257 0 12 hm5C_associated_SNPs_31223 0 0 0 0 2 MSTO1 chr1:155582107 5'GT 155582107 Upstream 78bp
chr8 22475262 22475262 1 + G T PAAD 22475273 + 22475253 22475293 41 AACCAGTCAGAGATGGAGTTCTCTTCACTTCAGGACATGGT AACCAGTCATAGATGGAGTTCTCTTCACTTCAGGACATGGT < 41bp 1 0.0554938447406278 1 0.0877296924591064 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22475273 chr8:22475262 stopgain 0.999 1 10 hm5C_associated_SNPs_31224 0 0 1 0 2 CCAR2 chr8:22475209 3'AG 22475209 Downstream 54bp
chr8 22475262 22475262 1 + G T PAAD 22475273 + 22475253 22475293 41 AACCAGTCAGAGATGGAGTTCTCTTCACTTCAGGACATGGT AACCAGTCATAGATGGAGTTCTCTTCACTTCAGGACATGGT < 41bp 1 0.0554938447406278 1 0.0877296924591064 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22475273 chr8:22475262 stopgain 0.999 1 10 hm5C_associated_SNPs_31224 0 0 1 0 2 CCAR2 chr8:22475291 5'GT 22475291 Upstream 30bp
chrX 14929376 14929376 1 + C A PAAD 14929381 + 14929361 14929401 41 TCCTTTCAAGTATAGCTATCCACCACTAGTAGATGATGACT TCCTTTCAAGTATAGATATCCACCACTAGTAGATGATGACT < 41bp 1 0.667481279530906 1 0.265115737915039 experiment 0.665037440938187 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD2 ENSG00000130150 CDS Human protein_coding chrX:14929381 chrX:14929376 nonsynonymous SNV 0.999 3 16 hm5C_associated_SNPs_31225 0 0 0 0 1 MOSPD2 chrX:14929359 3'AG 14929359 Downstream 18bp
chr2 26999265 26999265 1 + G T PAAD 26999245 + 26999225 26999265 41 CCTCCTTCCCCACAGGGGACCTGTTGATCATCATGGCCCAG CCTCCTTCCCCACAGGGGACCTGTTGATCATCATGGCCCAT < 41bp 1 0.0921615104979723 1 0.218355566263199 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC35F6 ENSG00000213699 CDS Human protein_coding chr2:26999245 chr2:26999265 nonsynonymous SNV 0.996 4 41 hm5C_associated_SNPs_31227 0 0 1 0 1 SLC35F6 chr2:26999240 3'AG 26999240 Downstream 26bp
chrX 110954908 110954908 1 + G A PAAD 110954916 + 110954896 110954936 41 TTTGAAGTATGTGGAGGGATCTTTTGAGAAATACCTGGAAC TTTGAAGTATGTAGAGGGATCTTTTGAGAAATACCTGGAAC < 41bp 1 0.124910982147797 1 0.0593499541282654 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG13 ENSG00000101901 CDS Human protein_coding chrX:110954916 chrX:110954908 synonymous SNV . 0 13 hm5C_associated_SNPs_31228 0 0 1 0 1 ALG13 chrX:110954903 3'AG 110954903 Downstream 6bp
chr14 94568225 94568225 1 + G A PAAD 94568211 + 94568191 94568231 41 CAGTGCCATGGGCTTCACCTCAGTAGGAATCGCCGCATCCT CAGTGCCATGGGCTTCACCTCAGTAGGAATCGCCACATCCT < 41bp 1 0.788448973779821 1 0.38884025812149 experiment 0.423102052440358 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFI27L1 ENSG00000165948 CDS Human protein_coding chr14:94568211 chr14:94568225 nonsynonymous SNV 0.001 1 35 hm5C_associated_SNPs_31229 0 0 1 0 2 IFI27L1 chr14:94568160 3'AG 94568160 Downstream 66bp
chr14 94568225 94568225 1 + G A PAAD 94568211 + 94568191 94568231 41 CAGTGCCATGGGCTTCACCTCAGTAGGAATCGCCGCATCCT CAGTGCCATGGGCTTCACCTCAGTAGGAATCGCCACATCCT < 41bp 1 0.788448973779821 1 0.38884025812149 experiment 0.423102052440358 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFI27L1 ENSG00000165948 CDS Human protein_coding chr14:94568211 chr14:94568225 nonsynonymous SNV 0.001 1 35 hm5C_associated_SNPs_31229 0 0 1 0 2 IFI27L1 chr14:94568321 5'GT 94568321 Upstream 97bp
chr17 49239138 49239138 1 + G A PAAD 49239124 + 49239104 49239144 41 CAGTGATTCTGTGGAGAGTGCAGAGAAGGAGATCGGCTTGT CAGTGATTCTGTGGAGAGTGCAGAGAAGGAGATCAGCTTGT < 41bp 1 0.418503188679261 1 0.454023748636246 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NME1 ENSG00000239672 CDS Human protein_coding chr17:49239124 chr17:49239138 nonsynonymous SNV 0.837 0 35 hm5C_associated_SNPs_31230 0 0 1 0 1 NME1 chr17:49239089 3'AG 49239089 Downstream 50bp
chr5 173378900 173378900 1 + A C PAAD 173378893 + 173378873 173378913 41 ATGGTTCACAGCCACTTGACCCACGAAAAACTATATTTGTT ATGGTTCACAGCCACTTGACCCACGAACAACTATATTTGTT < 41bp 1 0.16879160262073 1 0.18086189031601 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173378893 chr5:173378900 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_31231 0 0 1 0 2 CPEB4 chr5:173378827 3'AG 173378827 Downstream 74bp
chr5 173378900 173378900 1 + A C PAAD 173378893 + 173378873 173378913 41 ATGGTTCACAGCCACTTGACCCACGAAAAACTATATTTGTT ATGGTTCACAGCCACTTGACCCACGAACAACTATATTTGTT < 41bp 1 0.16879160262073 1 0.18086189031601 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173378893 chr5:173378900 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_31231 0 0 1 0 2 CPEB4 chr5:173378941 5'GT 173378941 Upstream 42bp
chr19 10200693 10200693 1 + C A PAAD 10200684 + 10200664 10200704 41 CAGTTTGCCTGCTCCTCCTGCGACCACGTCTGGTGGCGCCG CAGTTTGCCTGCTCCTCCTGCGACCACGTATGGTGGCGCCG < 41bp 1 0.222878614764982 1 0.440305888652802 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10200684 chr19:10200693 nonsynonymous SNV 0.998 0 30 hm5C_associated_SNPs_31232 0 0 1 0 1 C19orf66 chr19:10200723 5'GT 10200723 Upstream 31bp
chr19 10200693 10200693 1 + C A PAAD 10200688 + 10200668 10200708 41 TTGCCTGCTCCTCCTGCGACCACGTCTGGTGGCGCCGCGTG TTGCCTGCTCCTCCTGCGACCACGTATGGTGGCGCCGCGTG < 41bp 1 0.645102427882534 1 0.536223948001862 experiment 0.709795144234933 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10200688 chr19:10200693 nonsynonymous SNV 0.998 0 26 hm5C_associated_SNPs_31233 0 0 1 0 1 C19orf66 chr19:10200723 5'GT 10200723 Upstream 31bp
chr14 97018865 97018865 1 + G A PAAD 97018858 + 97018838 97018878 41 TTGACAGCTCTCAATGACAGCAGCCTCGACTTGTCTATGGA TTGACAGCTCTCAATGACAGCAGCCTCAACTTGTCTATGGA < 41bp 1 0.23683933200501 1 0.245135724544525 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97018858 chr14:97018865 nonsynonymous SNV 0.995 1 28 hm5C_associated_SNPs_31234 0 0 1 0 2 PAPOLA chr14:97018817 3'AG 97018817 Downstream 49bp
chr14 97018865 97018865 1 + G A PAAD 97018858 + 97018838 97018878 41 TTGACAGCTCTCAATGACAGCAGCCTCGACTTGTCTATGGA TTGACAGCTCTCAATGACAGCAGCCTCAACTTGTCTATGGA < 41bp 1 0.23683933200501 1 0.245135724544525 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97018858 chr14:97018865 nonsynonymous SNV 0.995 1 28 hm5C_associated_SNPs_31234 0 0 1 0 2 PAPOLA chr14:97018959 5'GT 97018959 Upstream 95bp
chr14 105179914 105179914 1 + C T PAAD 105179915 + 105179895 105179935 41 GGGGGCAGCAAGGCAGCCTCCATGGATCCCCCAAGAGCCAC GGGGGCAGCAAGGCAGCCTTCATGGATCCCCCAAGAGCCAC < 41bp 1 0.672498801834939 1 0.417495906352997 experiment 0.655002396330121 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105179915 chr14:105179914 nonsynonymous SNV 0.000 1 20 hm5C_associated_SNPs_31236 0 0 1 0 1 INF2 chr14:105179943 5'GT 105179943 Upstream 30bp
chr5 131667484 131667484 1 + T G PAAD 131667467 + 131667447 131667487 41 AGGAGCTAAATCCCCTGAAGCAGCAGAAAGCTTTCATTCTG AGGAGCTAAATCCCCTGAAGCAGCAGAAAGCTTTCATGCTG < 41bp 1 0.685466636184649 1 0.82073712348938 experiment 0.629066727630703 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131667467 chr5:131667484 nonsynonymous SNV 0.986 0 38 hm5C_associated_SNPs_31237 0 0 0 0 2 SLC22A4 chr5:131667449 3'AG 131667449 Downstream 36bp
chr5 131667484 131667484 1 + T G PAAD 131667467 + 131667447 131667487 41 AGGAGCTAAATCCCCTGAAGCAGCAGAAAGCTTTCATTCTG AGGAGCTAAATCCCCTGAAGCAGCAGAAAGCTTTCATGCTG < 41bp 1 0.685466636184649 1 0.82073712348938 experiment 0.629066727630703 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131667467 chr5:131667484 nonsynonymous SNV 0.986 0 38 hm5C_associated_SNPs_31237 0 0 0 0 2 SLC22A4 chr5:131667543 5'GT 131667543 Upstream 60bp
chr19 10794144 10794144 1 + C T PAAD 10794136 + 10794116 10794156 41 TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG TGCCCTAGAAAAGCTTTTCCCTGACACCTCTCTCGCCCTTG < 41bp 1 0.410097770626765 1 0.0616968274116516 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794136 chr19:10794144 nonsynonymous SNV 0.249 0 29 hm5C_associated_SNPs_31243 0 0 1 0 1 ILF3 chr19:10794218 5'GT 10794218 Upstream 75bp
chr19 10794144 10794144 1 + C T PAAD 10794142 + 10794122 10794162 41 AGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTGATGCCA AGAAAAGCTTTTCCCTGACACCTCTCTCGCCCTTGATGCCA < 41bp 1 0.0722896524807815 1 0.0413323938846588 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794142 chr19:10794144 nonsynonymous SNV 0.249 0 23 hm5C_associated_SNPs_31244 0 0 1 0 1 ILF3 chr19:10794218 5'GT 10794218 Upstream 75bp
chr3 41275096 41275096 1 + C T PAAD 41275104 + 41275084 41275124 41 TCACCTGTGCAGCTGGAATTCTTTCTAACCTCACTTGCAAT TCACCTGTGCAGTTGGAATTCTTTCTAACCTCACTTGCAAT < 41bp 1 0.100005987704676 1 0.135598421096802 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41275104 chr3:41275096 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_31247 0 0 1 0 1 CTNNB1 chr3:41275020 3'AG 41275020 Downstream 77bp
chr11 10772966 10772966 1 + C T PAAD 10772973 + 10772953 10772993 41 CCCCATCATGTCGCGGGGCTCCATCGAGATTCCCCTCCGGG CCCCATCATGTCGTGGGGCTCCATCGAGATTCCCCTCCGGG < 41bp 1 0.125441360874845 1 0.090250700712204 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTR9 ENSG00000198730 CDS Human protein_coding chr11:10772973 chr11:10772966 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_31252 0 0 1 0 1 CTR9 chr11:10773004 5'GT 10773004 Upstream 39bp
chr1 28607282 28607282 1 + C T PAAD 28607298 + 28607278 28607318 41 TACGCCCTCCGTGCCATCACCCGCTACATGACCTGACTCCT TACGTCCTCCGTGCCATCACCCGCTACATGACCTGACTCCT < 41bp 1 0.127353303394792 1 0.638968110084534 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SESN2 ENSG00000130766 CDS Human protein_coding chr1:28607298 chr1:28607282 nonsynonymous SNV 0.944 1 5 hm5C_associated_SNPs_31253 0 0 1 0 1 SESN2 chr1:28607227 3'AG 28607227 Downstream 56bp
chr3 170009678 170009678 1 + T C PAAD 170009695 + 170009675 170009715 41 TTCTGTGGTACTCCTAATTACATTGCTCCTGAAATTTTAAG TTCCGTGGTACTCCTAATTACATTGCTCCTGAAATTTTAAG < 41bp 1 0.100718146957955 1 0.0428065657615662 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:170009695 chr3:170009678 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_31254 0 0 0 0 2 PRKCI chr3:170009642 3'AG 170009642 Downstream 37bp
chr3 170009678 170009678 1 + T C PAAD 170009695 + 170009675 170009715 41 TTCTGTGGTACTCCTAATTACATTGCTCCTGAAATTTTAAG TTCCGTGGTACTCCTAATTACATTGCTCCTGAAATTTTAAG < 41bp 1 0.100718146957955 1 0.0428065657615662 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:170009695 chr3:170009678 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_31254 0 0 0 0 2 PRKCI chr3:170009729 5'GT 170009729 Upstream 52bp
chr4 3495172 3495172 1 + G T PAAD 3495163 + 3495143 3495183 41 CAGGCGGCCCCCACGCGGGGCCACCCCCGGCTTTCTTTTCG CAGGCGGCCCCCACGCGGGGCCACCCCCGTCTTTCTTTTCG < 41bp 1 0.0211213429191297 1 0.0295979678630829 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOK7 ENSG00000175920 CDS Human protein_coding chr4:3495163 chr4:3495172 nonsynonymous SNV 0.569 4 30 hm5C_associated_SNPs_31255 0 0 0 0 1 DOK7 chr4:3495210 5'GT 3495210 Upstream 39bp
chr4 3495172 3495172 1 + G T PAAD 3495164 + 3495144 3495184 41 AGGCGGCCCCCACGCGGGGCCACCCCCGGCTTTCTTTTCGG AGGCGGCCCCCACGCGGGGCCACCCCCGTCTTTCTTTTCGG < 41bp 1 0.145153708525917 1 0.0945664048194885 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOK7 ENSG00000175920 CDS Human protein_coding chr4:3495164 chr4:3495172 nonsynonymous SNV 0.569 4 29 hm5C_associated_SNPs_31256 0 0 0 0 1 DOK7 chr4:3495210 5'GT 3495210 Upstream 39bp
chr22 25043008 25043008 1 + G A PAAD 25042991 + 25042971 25043011 41 AGAGAGAGGTCCAAGGTGCCCTACATCATGCGCCAGTGCGT AGAGAGAGGTCCAAGGTGCCCTACATCATGCGCCAGTACGT < 41bp 1 0.672717593112148 1 0.390063941478729 experiment 0.654564813775704 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BCRP3;POM121L10P ENSG00000215481;ENSG00000224124 ncRNA_exonic Human other chr22:25042991 chr22:25043008 . . 0 38 hm5C_associated_SNPs_31257 0 0 0 0 2 BCRP3;POM121L10P chr22:25042970 3'AG 25042970 Downstream 39bp
chr22 25043008 25043008 1 + G A PAAD 25042991 + 25042971 25043011 41 AGAGAGAGGTCCAAGGTGCCCTACATCATGCGCCAGTGCGT AGAGAGAGGTCCAAGGTGCCCTACATCATGCGCCAGTACGT < 41bp 1 0.672717593112148 1 0.390063941478729 experiment 0.654564813775704 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BCRP3;POM121L10P ENSG00000215481;ENSG00000224124 ncRNA_exonic Human other chr22:25042991 chr22:25043008 . . 0 38 hm5C_associated_SNPs_31257 0 0 0 0 2 BCRP3;POM121L10P chr22:25043042 5'GT 25043042 Upstream 35bp
chr2 32696171 32696171 1 + G A PAAD 32696172 + 32696152 32696192 41 TGTTGAAGATGAAGCAGCAGCTGCAAAGAAACCTTTGAATG TGTTGAAGATGAAGCAGCAACTGCAAAGAAACCTTTGAATG < 41bp 1 0.473687611670819 1 0.357061147689819 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32696172 chr2:32696171 nonsynonymous SNV 1.000 0 20 hm5C_associated_SNPs_31260 0 0 0 0 2 BIRC6 chr2:32696082 3'AG 32696082 Downstream 90bp
chr2 32696171 32696171 1 + G A PAAD 32696172 + 32696152 32696192 41 TGTTGAAGATGAAGCAGCAGCTGCAAAGAAACCTTTGAATG TGTTGAAGATGAAGCAGCAACTGCAAAGAAACCTTTGAATG < 41bp 1 0.473687611670819 1 0.357061147689819 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32696172 chr2:32696171 nonsynonymous SNV 1.000 0 20 hm5C_associated_SNPs_31260 0 0 0 0 2 BIRC6 chr2:32696192 5'GT 32696192 Upstream 22bp
chr2 32696171 32696171 1 + G A PAAD 32696175 + 32696155 32696195 41 TGAAGATGAAGCAGCAGCTGCAAAGAAACCTTTGAATGGTA TGAAGATGAAGCAGCAACTGCAAAGAAACCTTTGAATGGTA < 41bp 1 0.0962663294491573 1 0.449520617723465 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32696175 chr2:32696171 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_31261 0 0 0 0 2 BIRC6 chr2:32696082 3'AG 32696082 Downstream 90bp
chr2 32696171 32696171 1 + G A PAAD 32696175 + 32696155 32696195 41 TGAAGATGAAGCAGCAGCTGCAAAGAAACCTTTGAATGGTA TGAAGATGAAGCAGCAACTGCAAAGAAACCTTTGAATGGTA < 41bp 1 0.0962663294491573 1 0.449520617723465 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32696175 chr2:32696171 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_31261 0 0 0 0 2 BIRC6 chr2:32696192 5'GT 32696192 Upstream 22bp
chr17 20135100 20135100 1 + T C PAAD 20135081 + 20135061 20135101 41 TTATTTCTAGGTAGTGTGATCAAGCTGGAGGAACAGAAGTC TTATTTCTAGGTAGTGTGATCAAGCTGGAGGAACAGAAGCC < 41bp 1 0.258701185443368 1 0.516099870204926 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135081 chr17:20135100 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_31262 0 0 1 0 2 SPECC1 chr17:20135071 3'AG 20135071 Downstream 30bp
chr17 20135100 20135100 1 + T C PAAD 20135081 + 20135061 20135101 41 TTATTTCTAGGTAGTGTGATCAAGCTGGAGGAACAGAAGTC TTATTTCTAGGTAGTGTGATCAAGCTGGAGGAACAGAAGCC < 41bp 1 0.258701185443368 1 0.516099870204926 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135081 chr17:20135100 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_31262 0 0 1 0 2 SPECC1 chr17:20135144 5'GT 20135144 Upstream 45bp
chr17 20135100 20135100 1 + T C PAAD 20135094 + 20135074 20135114 41 GTGTGATCAAGCTGGAGGAACAGAAGTCAGACCTGGAGAGG GTGTGATCAAGCTGGAGGAACAGAAGCCAGACCTGGAGAGG < 41bp 1 0.564418972326958 1 0.428783506155014 experiment 0.871162055346084 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135094 chr17:20135100 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_31263 0 0 1 0 2 SPECC1 chr17:20135071 3'AG 20135071 Downstream 30bp
chr17 20135100 20135100 1 + T C PAAD 20135094 + 20135074 20135114 41 GTGTGATCAAGCTGGAGGAACAGAAGTCAGACCTGGAGAGG GTGTGATCAAGCTGGAGGAACAGAAGCCAGACCTGGAGAGG < 41bp 1 0.564418972326958 1 0.428783506155014 experiment 0.871162055346084 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135094 chr17:20135100 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_31263 0 0 1 0 2 SPECC1 chr17:20135144 5'GT 20135144 Upstream 45bp
chr17 20135100 20135100 1 + T C PAAD 20135101 + 20135081 20135121 41 CAAGCTGGAGGAACAGAAGTCAGACCTGGAGAGGCAGCTGA CAAGCTGGAGGAACAGAAGCCAGACCTGGAGAGGCAGCTGA < 41bp 1 0.17559457160901 1 0.350308954715729 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135101 chr17:20135100 nonsynonymous SNV 1.000 0 20 hm5C_associated_SNPs_31264 0 0 1 0 2 SPECC1 chr17:20135071 3'AG 20135071 Downstream 30bp
chr17 20135100 20135100 1 + T C PAAD 20135101 + 20135081 20135121 41 CAAGCTGGAGGAACAGAAGTCAGACCTGGAGAGGCAGCTGA CAAGCTGGAGGAACAGAAGCCAGACCTGGAGAGGCAGCTGA < 41bp 1 0.17559457160901 1 0.350308954715729 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135101 chr17:20135100 nonsynonymous SNV 1.000 0 20 hm5C_associated_SNPs_31264 0 0 1 0 2 SPECC1 chr17:20135144 5'GT 20135144 Upstream 45bp
chr7 129394908 129394908 1 + G A PAAD 129394901 + 129394881 129394921 41 ATGTACCAGACTGTGGTGACCAGCCTCGCCCAGGGCAACGG ATGTACCAGACTGTGGTGACCAGCCTCACCCAGGGCAACGG < 41bp 1 0.583863391957741 1 0.192728310823441 experiment 0.832273216084517 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NRF1 ENSG00000106459 CDS Human protein_coding chr7:129394901 chr7:129394908 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_31265 0 0 1 0 1 NRF1 chr7:129394858 3'AG 129394858 Downstream 51bp
chr3 142739482 142739482 1 + G A PAAD 142739480 + 142739460 142739500 41 GAGAGACATAAAACAAAAGGCAGATTAAGTCGATTTGAACC GAGAGACATAAAACAAAAGGCAAATTAAGTCGATTTGAACC < 41bp 1 0.181319360650217 1 0.394461810588837 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2SURP ENSG00000163714 CDS Human protein_coding chr3:142739480 chr3:142739482 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_31266 0 0 1 0 2 U2SURP chr3:142739441 3'AG 142739441 Downstream 42bp
chr3 142739482 142739482 1 + G A PAAD 142739480 + 142739460 142739500 41 GAGAGACATAAAACAAAAGGCAGATTAAGTCGATTTGAACC GAGAGACATAAAACAAAAGGCAAATTAAGTCGATTTGAACC < 41bp 1 0.181319360650217 1 0.394461810588837 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2SURP ENSG00000163714 CDS Human protein_coding chr3:142739480 chr3:142739482 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_31266 0 0 1 0 2 U2SURP chr3:142739535 5'GT 142739535 Upstream 54bp
chr17 72239558 72239558 1 + C T PAAD 72239546 + 72239526 72239566 41 CTCCTGCTCTTTATCCTGGACCTGGTCATCTGCCTCATTGC CTCCTGCTCTTTATCCTGGACCTGGTCATCTGTCTCATTGC < 41bp 1 0.141740689004926 1 0.051023006439209 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72239546 chr17:72239558 synonymous SNV . 0 33 hm5C_associated_SNPs_31267 0 0 1 0 2 TTYH2 chr17:72239513 3'AG 72239513 Downstream 46bp
chr17 72239558 72239558 1 + C T PAAD 72239546 + 72239526 72239566 41 CTCCTGCTCTTTATCCTGGACCTGGTCATCTGCCTCATTGC CTCCTGCTCTTTATCCTGGACCTGGTCATCTGTCTCATTGC < 41bp 1 0.141740689004926 1 0.051023006439209 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72239546 chr17:72239558 synonymous SNV . 0 33 hm5C_associated_SNPs_31267 0 0 1 0 2 TTYH2 chr17:72239608 5'GT 72239608 Upstream 51bp
chr10 17276772 17276772 1 + A G PAAD 17276757 + 17276737 17276777 41 CGCCAGGCAAAGCAGGAGTCCACTGAGTACCGGAGACAGGT CGCCAGGCAAAGCAGGAGTCCACTGAGTACCGGAGGCAGGT < 41bp 1 0.300754738748721 1 0.161451011896133 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276757 chr10:17276772 synonymous SNV . 0 36 hm5C_associated_SNPs_31269 0 0 1 0 2 VIM chr10:17276692 3'AG 17276692 Downstream 81bp
chr10 17276772 17276772 1 + A G PAAD 17276757 + 17276737 17276777 41 CGCCAGGCAAAGCAGGAGTCCACTGAGTACCGGAGACAGGT CGCCAGGCAAAGCAGGAGTCCACTGAGTACCGGAGGCAGGT < 41bp 1 0.300754738748721 1 0.161451011896133 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276757 chr10:17276772 synonymous SNV . 0 36 hm5C_associated_SNPs_31269 0 0 1 0 2 VIM chr10:17276817 5'GT 17276817 Upstream 46bp
chr3 32483422 32483422 1 + G A PAAD 32483437 + 32483417 32483457 41 TTTGCGACTTGATAATGATCCTCGCCTTTTACCTGGTCCAC TTTGCAACTTGATAATGATCCTCGCCTTTTACCTGGTCCAC < 41bp 1 0.498880766394587 1 0.079690009355545 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32483437 chr3:32483422 nonsynonymous SNV 0.994 0 6 hm5C_associated_SNPs_31270 0 0 1 0 2 CMTM7 chr3:32483332 3'AG 32483332 Downstream 91bp
chr3 32483422 32483422 1 + G A PAAD 32483437 + 32483417 32483457 41 TTTGCGACTTGATAATGATCCTCGCCTTTTACCTGGTCCAC TTTGCAACTTGATAATGATCCTCGCCTTTTACCTGGTCCAC < 41bp 1 0.498880766394587 1 0.079690009355545 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32483437 chr3:32483422 nonsynonymous SNV 0.994 0 6 hm5C_associated_SNPs_31270 0 0 1 0 2 CMTM7 chr3:32483505 5'GT 32483505 Upstream 84bp
chr16 599309 599309 1 + G A PAAD 599322 + 599302 599342 41 TGGCGGTGCTGGCGGAGCGGCCGGACCTGGTGGAGCGGGTG TGGCGGTACTGGCGGAGCGGCCGGACCTGGTGGAGCGGGTG < 41bp 1 0.30934889286102 1 0.696242928504944 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:599322 chr16:599309 synonymous SNV . 0 8 hm5C_associated_SNPs_31271 0 0 1 0 1 CAPN15 chr16:599288 3'AG 599288 Downstream 22bp
chr4 88047336 88047336 1 + C T PAAD 88047316 + 88047296 88047336 41 CCCGCCACCCGTGTCCTCGTCCTCCCAGAAGCCAGCCAAGC CCCGCCACCCGTGTCCTCGTCCTCCCAGAAGCCAGCCAAGT < 41bp 1 0.0314926623861213 1 0.0901947617530823 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AFF1 ENSG00000172493 CDS Human protein_coding chr4:88047316 chr4:88047336 nonsynonymous SNV 0.764 0 41 hm5C_associated_SNPs_31272 0 0 1 0 1 AFF1 chr4:88047251 3'AG 88047251 Downstream 86bp
chr22 29533635 29533635 1 + G A PAAD 29533628 + 29533608 29533648 41 TATTTCTTCTCTGATCGCATCAATCAGGCCCAGGGATTTGC TATTTCTTCTCTGATCGCATCAATCAGACCCAGGGATTTGC < 41bp 1 0.0271977566099937 1 0.0666908025741577 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KREMEN1 ENSG00000183762 CDS Human protein_coding chr22:29533628 chr22:29533635 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_31273 0 0 1 0 1 KREMEN1 chr22:29533662 5'GT 29533662 Upstream 28bp
chr17 4621244 4621244 1 + C T PAAD 4621233 + 4621213 4621253 41 GCAGTTCGCCCCGGAGAAACCCGGCCCCCAGCCTTCAGCCG GCAGTTCGCCCCGGAGAAACCCGGCCCCCAGTCTTCAGCCG < 41bp 1 0.592513497531132 1 0.612009882926941 experiment 0.814973004937736 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4621233 chr17:4621244 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_31274 0 0 0 0 2 ARRB2 chr17:4621183 3'AG 4621183 Downstream 62bp
chr17 4621244 4621244 1 + C T PAAD 4621233 + 4621213 4621253 41 GCAGTTCGCCCCGGAGAAACCCGGCCCCCAGCCTTCAGCCG GCAGTTCGCCCCGGAGAAACCCGGCCCCCAGTCTTCAGCCG < 41bp 1 0.592513497531132 1 0.612009882926941 experiment 0.814973004937736 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4621233 chr17:4621244 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_31274 0 0 0 0 2 ARRB2 chr17:4621318 5'GT 4621318 Upstream 75bp
chr10 112335133 112335133 1 + G A PAAD 112335144 + 112335124 112335164 41 GTCATCTTCGTCCAGAACAGCGGTTGGCTTTATTGCATGTG GTCATCTTCATCCAGAACAGCGGTTGGCTTTATTGCATGTG < 41bp 1 0.186254293253178 1 0.114853501319885 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMC3 ENSG00000108055 CDS Human protein_coding chr10:112335144 chr10:112335133 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_31277 0 0 1 0 2 SMC3 chr10:112335094 3'AG 112335094 Downstream 40bp
chr10 112335133 112335133 1 + G A PAAD 112335144 + 112335124 112335164 41 GTCATCTTCGTCCAGAACAGCGGTTGGCTTTATTGCATGTG GTCATCTTCATCCAGAACAGCGGTTGGCTTTATTGCATGTG < 41bp 1 0.186254293253178 1 0.114853501319885 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMC3 ENSG00000108055 CDS Human protein_coding chr10:112335144 chr10:112335133 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_31277 0 0 1 0 2 SMC3 chr10:112335161 5'GT 112335161 Upstream 29bp
chr1 1222152 1222152 1 + A G PAAD 1222163 + 1222143 1222183 41 CCCAGGCCGAGTCCGGTCCTCCGCCATCTGGAGCTGCTGGA CCCAGGCCGGGTCCGGTCCTCCGCCATCTGGAGCTGCTGGA < 41bp 1 0.191437325266447 1 0.36424994468689 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1222163 chr1:1222152 nonsynonymous SNV 0.005 0 10 hm5C_associated_SNPs_31278 0 0 0 0 1 SCNN1D chr1:1222148 3'AG 1222148 Downstream 5bp
chr20 36662454 36662454 1 + G A PAAD 36662465 + 36662445 36662485 41 CCACCGCAAGCACGCGGGACCCATCGTCTCCGTGTGGCACC CCACCGCAAACACGCGGGACCCATCGTCTCCGTGTGGCACC < 41bp 1 0.129741090146959 1 0.0243767201900482 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPRD1B ENSG00000101413 CDS Human protein_coding chr20:36662465 chr20:36662454 synonymous SNV . 0 10 hm5C_associated_SNPs_31279 0 0 1 0 1 RPRD1B chr20:36662500 5'GT 36662500 Upstream 47bp
chr19 3151773 3151773 1 + G T PAAD 3151786 + 3151766 3151806 41 CTCCGCAGCCGCATGCCCACCACTGGCATCAACGAGTACTG CTCCGCATCCGCATGCCCACCACTGGCATCAACGAGTACTG < 41bp 1 0.376704068356761 1 0.0948977172374725 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNA15 ENSG00000060558 CDS Human protein_coding chr19:3151786 chr19:3151773 nonsynonymous SNV 0.870 1 8 hm5C_associated_SNPs_31281 0 0 0 0 2 GNA15 chr19:3151705 3'AG 3151705 Downstream 69bp
chr19 3151773 3151773 1 + G T PAAD 3151786 + 3151766 3151806 41 CTCCGCAGCCGCATGCCCACCACTGGCATCAACGAGTACTG CTCCGCATCCGCATGCCCACCACTGGCATCAACGAGTACTG < 41bp 1 0.376704068356761 1 0.0948977172374725 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNA15 ENSG00000060558 CDS Human protein_coding chr19:3151786 chr19:3151773 nonsynonymous SNV 0.870 1 8 hm5C_associated_SNPs_31281 0 0 0 0 2 GNA15 chr19:3151833 5'GT 3151833 Upstream 61bp
chr17 7800528 7800528 1 + C A PAAD 7800537 + 7800517 7800557 41 AGTGAAAGACCCGCACTATGCTGAGATGGAGGAGAAGTACT AGTGAAAGACCAGCACTATGCTGAGATGGAGGAGAAGTACT < 41bp 1 0.489779495191723 1 0.504289925098419 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7800537 chr17:7800528 nonsynonymous SNV 0.945 3 12 hm5C_associated_SNPs_31284 0 0 1 0 1 CHD3 chr17:7800612 5'GT 7800612 Upstream 85bp
chr7 39991439 39991439 1 + G T PAAD 39991428 + 39991408 39991448 41 AGCAGCTGGCGCCGCTCTCGCAGTCCCTACAGCCCTGTGCT AGCAGCTGGCGCCGCTCTCGCAGTCCCTACATCCCTGTGCT < 41bp 1 0.244430472471818 1 0.71311616897583 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:39991428 chr7:39991439 nonsynonymous SNV 0.992 1 32 hm5C_associated_SNPs_31285 0 0 1 0 1 CDK13 chr7:39991451 5'GT 39991451 Upstream 13bp
chr17 38610230 38610230 1 + C T PAAD 38610248 + 38610228 38610268 41 GCCGCTTCACAGAGCCGCACCCACGAGGACCTCTACATCAT GCTGCTTCACAGAGCCGCACCCACGAGGACCTCTACATCAT < 41bp 1 0.361102458911334 1 0.0991674065589905 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38610248 chr17:38610230 synonymous SNV . 0 3 hm5C_associated_SNPs_31286 0 0 1 0 2 IGFBP4 chr17:38610180 3'AG 38610180 Downstream 51bp
chr17 38610230 38610230 1 + C T PAAD 38610248 + 38610228 38610268 41 GCCGCTTCACAGAGCCGCACCCACGAGGACCTCTACATCAT GCTGCTTCACAGAGCCGCACCCACGAGGACCTCTACATCAT < 41bp 1 0.361102458911334 1 0.0991674065589905 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38610248 chr17:38610230 synonymous SNV . 0 3 hm5C_associated_SNPs_31286 0 0 1 0 2 IGFBP4 chr17:38610314 5'GT 38610314 Upstream 85bp
chr6 148808758 148808758 1 + A G PAAD 148808768 + 148808748 148808788 41 AGCTCAAGGAATACGAGGCCCAGCACCGGCAGTCGGCTGCC AGCTCAAGGAGTACGAGGCCCAGCACCGGCAGTCGGCTGCC < 41bp 1 0.661232997318373 1 0.33796426653862 experiment 0.677534005363253 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SASH1 ENSG00000111961 CDS Human protein_coding chr6:148808768 chr6:148808758 synonymous SNV . 0 11 hm5C_associated_SNPs_31289 0 0 0 0 2 SASH1 chr6:148808750 3'AG 148808750 Downstream 9bp
chr6 148808758 148808758 1 + A G PAAD 148808768 + 148808748 148808788 41 AGCTCAAGGAATACGAGGCCCAGCACCGGCAGTCGGCTGCC AGCTCAAGGAGTACGAGGCCCAGCACCGGCAGTCGGCTGCC < 41bp 1 0.661232997318373 1 0.33796426653862 experiment 0.677534005363253 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SASH1 ENSG00000111961 CDS Human protein_coding chr6:148808768 chr6:148808758 synonymous SNV . 0 11 hm5C_associated_SNPs_31289 0 0 0 0 2 SASH1 chr6:148808851 5'GT 148808851 Upstream 94bp
chr7 102107909 102107909 1 + G A PAAD 102107918 + 102107898 102107938 41 AGTCCCTCAGCGAGTTCACCCAGTGGCGGGTATGTCCCTGT AGTCCCTCAGCAAGTTCACCCAGTGGCGGGTATGTCCCTGT < 41bp 1 0.358925285339342 1 0.249459981918335 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102107918 chr7:102107909 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_31291 0 0 0 0 1 LRWD1 chr7:102107926 5'GT 102107926 Upstream 18bp
chr19 11105645 11105645 1 + C T PAAD 11105627 + 11105607 11105647 41 ATGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACGAGCGG ATGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACGAGTGG < 41bp 1 0.61837081918984 1 0.733787775039673 experiment 0.763258361620321 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11105627 chr19:11105645 nonsynonymous SNV 0.006 4 39 hm5C_associated_SNPs_31292 0 0 1 0 1 SMARCA4 chr19:11105677 5'GT 11105677 Upstream 33bp
chr16 1551487 1551487 1 + G A PAAD 1551467 + 1551447 1551487 41 GCTGCTGGCCTTGGCCTCCCCCCAGCCTGCGGGTGACGGCG GCTGCTGGCCTTGGCCTCCCCCCAGCCTGCGGGTGACGGCA < 41bp 1 0.351112815932058 1 0.362650752067566 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1551467 chr16:1551487 nonsynonymous SNV 0.000 1 41 hm5C_associated_SNPs_31293 0 0 0 0 2 TELO2 chr16:1551421 3'AG 1551421 Downstream 67bp
chr16 1551487 1551487 1 + G A PAAD 1551467 + 1551447 1551487 41 GCTGCTGGCCTTGGCCTCCCCCCAGCCTGCGGGTGACGGCG GCTGCTGGCCTTGGCCTCCCCCCAGCCTGCGGGTGACGGCA < 41bp 1 0.351112815932058 1 0.362650752067566 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1551467 chr16:1551487 nonsynonymous SNV 0.000 1 41 hm5C_associated_SNPs_31293 0 0 0 0 2 TELO2 chr16:1551500 5'GT 1551500 Upstream 14bp
chr5 145849225 145849225 1 + A C PAAD 145849206 + 145849186 145849226 41 AGCTGGAGCAACAGCAGTTTCTGAATGGACTGAATATAAAA AGCTGGAGCAACAGCAGTTTCTGAATGGACTGAATATAACA < 41bp 1 0.772090267854896 1 0.769789218902588 experiment 0.455819464290208 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145849206 chr5:145849225 nonsynonymous SNV 1.000 5 40 hm5C_associated_SNPs_31295 0 0 1 0 1 TCERG1 chr5:145849307 5'GT 145849307 Upstream 83bp
chr11 66294149 66294149 1 + C T PAAD 66294153 + 66294133 66294173 41 CATCAAGATCCTGAAGCGTACAGCAGTGTTTGTAGAGGGAG CATCAAGATCCTGAAGTGTACAGCAGTGTTTGTAGAGGGAG < 41bp 1 0.777396986140043 1 0.101105183362961 experiment 0.445206027719914 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66294153 chr11:66294149 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_31297 0 0 1 0 1 BBS1 chr11:66294120 3'AG 66294120 Downstream 30bp
chr1 164789358 164789358 1 + C T PAAD 164789352 + 164789332 164789372 41 TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA TCAAACTCTGGAGATTTGTTCATGAGTGTGCAGTCACTCAA < 41bp 1 0.648002647465643 1 0.113921612501144 experiment 0.703994705068714 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789352 chr1:164789358 synonymous SNV . 0 27 hm5C_associated_SNPs_31298 0 0 0 0 2 PBX1 chr1:164789309 3'AG 164789309 Downstream 50bp
chr1 164789358 164789358 1 + C T PAAD 164789352 + 164789332 164789372 41 TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA TCAAACTCTGGAGATTTGTTCATGAGTGTGCAGTCACTCAA < 41bp 1 0.648002647465643 1 0.113921612501144 experiment 0.703994705068714 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789352 chr1:164789358 synonymous SNV . 0 27 hm5C_associated_SNPs_31298 0 0 0 0 2 PBX1 chr1:164789421 5'GT 164789421 Upstream 64bp
chr7 79842159 79842159 1 + T A PAAD 79842156 + 79842136 79842176 41 AGAAAAAATCAAAAAGAGCCCTCTCACTATATGCTATCCAG AGAAAAAATCAAAAAGAGCCCTCACACTATATGCTATCCAG < 41bp 1 0.222738842891005 1 0.155076593160629 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79842156 chr7:79842159 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_31299 0 0 1 0 1 GNAI1 chr7:79842185 5'GT 79842185 Upstream 27bp
chr12 6618917 6618917 1 + G A PAAD 6618914 + 6618894 6618934 41 GCCTTTCGAGCTCAGGGGCCCCTGGCTATGCTGCAGCACTT GCCTTTCGAGCTCAGGGGCCCCTAGCTATGCTGCAGCACTT < 41bp 1 0.0537743420871404 1 0.0866893231868744 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6618914 chr12:6618917 stopgain . 0 24 hm5C_associated_SNPs_31300 0 0 1 0 2 NCAPD2 chr12:6618883 3'AG 6618883 Downstream 35bp
chr12 6618917 6618917 1 + G A PAAD 6618914 + 6618894 6618934 41 GCCTTTCGAGCTCAGGGGCCCCTGGCTATGCTGCAGCACTT GCCTTTCGAGCTCAGGGGCCCCTAGCTATGCTGCAGCACTT < 41bp 1 0.0537743420871404 1 0.0866893231868744 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6618914 chr12:6618917 stopgain . 0 24 hm5C_associated_SNPs_31300 0 0 1 0 2 NCAPD2 chr12:6618958 5'GT 6618958 Upstream 42bp
chr11 489663 489663 1 + C T PAAD 489680 + 489660 489700 41 CTCCTGCGGCTCGTCTTCTTCGTGAACGTGGGTGGCGTGGC CTCTTGCGGCTCGTCTTCTTCGTGAACGTGGGTGGCGTGGC < 41bp 1 0.763117294386726 1 0.901731491088867 experiment 0.473765411226549 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control PTDSS2 ENSG00000174915 CDS Human protein_coding chr11:489680 chr11:489663 synonymous SNV . 0 4 hm5C_associated_SNPs_31301 0 0 0 0 2 PTDSS2 chr11:489588 3'AG 489588 Downstream 76bp
chr11 489663 489663 1 + C T PAAD 489680 + 489660 489700 41 CTCCTGCGGCTCGTCTTCTTCGTGAACGTGGGTGGCGTGGC CTCTTGCGGCTCGTCTTCTTCGTGAACGTGGGTGGCGTGGC < 41bp 1 0.763117294386726 1 0.901731491088867 experiment 0.473765411226549 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control PTDSS2 ENSG00000174915 CDS Human protein_coding chr11:489680 chr11:489663 synonymous SNV . 0 4 hm5C_associated_SNPs_31301 0 0 0 0 2 PTDSS2 chr11:489733 5'GT 489733 Upstream 71bp
chr16 30680180 30680180 1 + G A PAAD 30680193 + 30680173 30680213 41 CTGCACCGCAGTCCTCTGACCTTTCCTGCCTGGGTCCGGCC CTGCACCACAGTCCTCTGACCTTTCCTGCCTGGGTCCGGCC < 41bp 1 0.0524571734618113 1 0.022062212228775 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBRS ENSG00000156860 CDS Human protein_coding chr16:30680193 chr16:30680180 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_31302 0 0 1 0 1 FBRS chr16:30680093 3'AG 30680093 Downstream 88bp
chr1 32620216 32620216 1 + A G PAAD 32620232 + 32620212 32620252 41 GACAATTATCGAATGAAGAGCTATAAGAACAATGCTCTAAA GACAGTTATCGAATGAAGAGCTATAAGAACAATGCTCTAAA < 41bp 1 0.238790697785946 1 0.445767015218735 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620232 chr1:32620216 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_31303 0 0 1 0 1 KPNA6 chr1:32620189 3'AG 32620189 Downstream 28bp
chr3 49719835 49719835 1 + G A PAAD 49719826 + 49719806 49719846 41 TGGCCAGGACAGCATCCTCTCCCTCCCAGGCAATGTGGGCC TGGCCAGGACAGCATCCTCTCCCTCCCAGACAATGTGGGCC < 41bp 1 0.0660501166427457 1 0.155412435531616 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49719826 chr3:49719835 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_31304 0 0 1 0 2 APEH chr3:49719781 3'AG 49719781 Downstream 55bp
chr3 49719835 49719835 1 + G A PAAD 49719826 + 49719806 49719846 41 TGGCCAGGACAGCATCCTCTCCCTCCCAGGCAATGTGGGCC TGGCCAGGACAGCATCCTCTCCCTCCCAGACAATGTGGGCC < 41bp 1 0.0660501166427457 1 0.155412435531616 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49719826 chr3:49719835 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_31304 0 0 1 0 2 APEH chr3:49719869 5'GT 49719869 Upstream 35bp
chr8 33356000 33356000 1 + C T PAAD 33355999 + 33355979 33356019 41 TGAAGATCAGGATGGTAAATCCTCCAGTGAGGAGGAGGAAG TGAAGATCAGGATGGTAAATCTTCCAGTGAGGAGGAGGAAG < 41bp 1 0.297722668561165 1 0.12075001001358 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAK16 ENSG00000198042 CDS Human protein_coding chr8:33355999 chr8:33356000 synonymous SNV . 0 22 hm5C_associated_SNPs_31305 0 0 1 0 1 MAK16 chr8:33355950 3'AG 33355950 Downstream 51bp
chr16 309975 309975 1 + C A PAAD 309995 + 309975 310015 41 CTCTCCCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG ATCTCCCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG < 41bp 1 0.593698888970518 1 0.0427016913890839 experiment 0.812602222058963 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:309995 chr16:309975 synonymous SNV . 0 1 hm5C_associated_SNPs_31306 0 0 1 4 1 FAM234A chr16:309968 3'AG 309968 Downstream 8bp
chr10 75529125 75529125 1 + C A PAAD 75529135 + 75529115 75529155 41 TTTACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCAT TTTACACCAGATGTGCAGGGCAGCGTCGGCTCCGCATCCAT < 41bp 1 0.508110663626559 1 0.120126157999039 experiment 0.983778672746882 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529135 chr10:75529125 nonsynonymous SNV 0.998 3 11 hm5C_associated_SNPs_31307 0 0 1 2 1 SEC24C chr10:75529105 3'AG 75529105 Downstream 21bp
chr10 75529125 75529125 1 + C A PAAD 75529138 + 75529118 75529158 41 ACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCATAAT ACACCAGATGTGCAGGGCAGCGTCGGCTCCGCATCCATAAT < 41bp 1 0.443536903620494 1 0.247593432664871 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529138 chr10:75529125 nonsynonymous SNV 0.998 3 8 hm5C_associated_SNPs_31308 0 0 1 2 1 SEC24C chr10:75529105 3'AG 75529105 Downstream 21bp
chr9 78506218 78506218 1 + G A PAAD 78506235 + 78506215 78506255 41 GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT GCAATCAAAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT < 41bp 1 0.0471147295846988 1 0.0555294752120972 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78506235 chr9:78506218 nonsynonymous SNV 0.997 0 4 hm5C_associated_SNPs_31309 0 0 0 0 1 PCSK5 chr9:78506289 5'GT 78506289 Upstream 72bp
chr20 42089353 42089353 1 + C T PAAD 42089358 + 42089338 42089378 41 TCCAGTTCCAGGTCGCGGAGCAAAGGTCGATCACGTTCTCG TCCAGTTCCAGGTCGTGGAGCAAAGGTCGATCACGTTCTCG < 41bp 1 0.494417296708005 1 0.342775464057922 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089358 chr20:42089353 nonsynonymous SNV 0.994 4 16 hm5C_associated_SNPs_31310 0 0 1 0 1 SRSF6 chr20:42089343 3'AG 42089343 Downstream 11bp
chr8 110569174 110569174 1 + A T PAAD 110569185 + 110569165 110569205 41 TTGTTATTAAGAAGAGAGAACCATTGAATTTTGGCATCCCA TTGTTATTATGAAGAGAGAACCATTGAATTTTGGCATCCCA < 41bp 1 0.0368316122913672 1 0.0842180550098419 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110569185 chr8:110569174 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_31311 0 0 1 0 2 EBAG9 chr8:110569164 3'AG 110569164 Downstream 11bp
chr8 110569174 110569174 1 + A T PAAD 110569185 + 110569165 110569205 41 TTGTTATTAAGAAGAGAGAACCATTGAATTTTGGCATCCCA TTGTTATTATGAAGAGAGAACCATTGAATTTTGGCATCCCA < 41bp 1 0.0368316122913672 1 0.0842180550098419 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110569185 chr8:110569174 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_31311 0 0 1 0 2 EBAG9 chr8:110569271 5'GT 110569271 Upstream 98bp
chr19 13054419 13054419 1 + C T PAAD 13054404 + 13054384 13054424 41 ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGTAACGA < 41bp 1 0.551845123333885 1 0.145428597927094 experiment 0.89630975333223 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054404 chr19:13054419 synonymous SNV . 0 36 hm5C_associated_SNPs_31312 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 69bp
chr19 13054419 13054419 1 + C T PAAD 13054404 + 13054384 13054424 41 ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGTAACGA < 41bp 1 0.551845123333885 1 0.145428597927094 experiment 0.89630975333223 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054404 chr19:13054419 synonymous SNV . 0 36 hm5C_associated_SNPs_31312 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 25bp
chr19 13054419 13054419 1 + C T PAAD 13054406 + 13054386 13054426 41 CACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGAGA CACCAACGATGAGGCATACGCTGAGGAGTTTGGTAACGAGA < 41bp 1 0.70470129029921 1 0.355654209852219 experiment 0.590597419401581 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054406 chr19:13054419 synonymous SNV . 0 34 hm5C_associated_SNPs_31313 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 69bp
chr19 13054419 13054419 1 + C T PAAD 13054406 + 13054386 13054426 41 CACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGAGA CACCAACGATGAGGCATACGCTGAGGAGTTTGGTAACGAGA < 41bp 1 0.70470129029921 1 0.355654209852219 experiment 0.590597419401581 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054406 chr19:13054419 synonymous SNV . 0 34 hm5C_associated_SNPs_31313 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 25bp
chr19 13054419 13054419 1 + C T PAAD 13054427 + 13054407 13054447 41 TGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA TGAGGAGTTTGGTAACGAGACGTGGGGCGTAACAAAGGTGA < 41bp 1 0.68679968622335 1 0.384872108697891 experiment 0.626400627553299 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054427 chr19:13054419 synonymous SNV . 0 13 hm5C_associated_SNPs_31314 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 69bp
chr19 13054419 13054419 1 + C T PAAD 13054427 + 13054407 13054447 41 TGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA TGAGGAGTTTGGTAACGAGACGTGGGGCGTAACAAAGGTGA < 41bp 1 0.68679968622335 1 0.384872108697891 experiment 0.626400627553299 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054427 chr19:13054419 synonymous SNV . 0 13 hm5C_associated_SNPs_31314 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 25bp
chr7 5644983 5644983 1 + G A PAAD 5644976 + 5644956 5644996 41 GGCGACACTCCTGTGGACTTCTTCTTCGAGTTCTGCGACTA GGCGACACTCCTGTGGACTTCTTCTTCAAGTTCTGCGACTA < 41bp 1 0.214582497534498 1 0.363358974456787 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5644976 chr7:5644983 nonsynonymous SNV 0.991 2 28 hm5C_associated_SNPs_31320 0 0 1 0 1 FSCN1 chr7:5644903 3'AG 5644903 Downstream 81bp
chr1 22333995 22333995 1 + G A PAAD 22333990 + 22333970 22334010 41 ATGGTGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGT ATGGTGTGTGCTGGAGGGTACATCCACTCCGGCTGCAACGT < 41bp 1 0.175573593438824 1 0.0877573192119598 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333990 chr1:22333995 nonsynonymous SNV 0.001 1 26 hm5C_associated_SNPs_31321 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 14bp
chr1 22333995 22333995 1 + G A PAAD 22333993 + 22333973 22334013 41 GTGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAG GTGTGTGCTGGAGGGTACATCCACTCCGGCTGCAACGTGAG < 41bp 1 0.29008013907495 1 0.159871131181717 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333993 chr1:22333995 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_31322 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 14bp
chr1 22333995 22333995 1 + G A PAAD 22333994 + 22333974 22334014 41 TGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAGT TGTGTGCTGGAGGGTACATCCACTCCGGCTGCAACGTGAGT < 41bp 1 0.27034824878393 1 0.232624232769012 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333994 chr1:22333995 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_31323 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 14bp
chr1 22333995 22333995 1 + G A PAAD 22333998 + 22333978 22334018 41 TGCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAGTCAGC TGCTGGAGGGTACATCCACTCCGGCTGCAACGTGAGTCAGC < 41bp 1 0.485879535402909 1 0.557449877262115 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333998 chr1:22333995 nonsynonymous SNV 0.001 1 18 hm5C_associated_SNPs_31324 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 14bp
chr1 22333995 22333995 1 + G A PAAD 22333999 + 22333979 22334019 41 GCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAGTCAGCT GCTGGAGGGTACATCCACTCCGGCTGCAACGTGAGTCAGCT < 41bp 1 0.561316540306999 1 0.431203544139862 experiment 0.877366919386001 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333999 chr1:22333995 nonsynonymous SNV 0.001 1 17 hm5C_associated_SNPs_31325 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 14bp
chr1 22333995 22333995 1 + G A PAAD 22334002 + 22333982 22334022 41 GGAGGGTACATCCGCTCCGGCTGCAACGTGAGTCAGCTCTT GGAGGGTACATCCACTCCGGCTGCAACGTGAGTCAGCTCTT < 41bp 1 0.616753034218017 1 0.192994177341461 experiment 0.766493931563966 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22334002 chr1:22333995 nonsynonymous SNV 0.001 1 14 hm5C_associated_SNPs_31326 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 14bp
chr1 22333995 22333995 1 + G A PAAD 22334005 + 22333985 22334025 41 GGGTACATCCGCTCCGGCTGCAACGTGAGTCAGCTCTTACC GGGTACATCCACTCCGGCTGCAACGTGAGTCAGCTCTTACC < 41bp 1 0.487713338970884 1 0.209506183862686 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22334005 chr1:22333995 nonsynonymous SNV 0.001 1 11 hm5C_associated_SNPs_31327 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 14bp
chr5 68490517 68490517 1 + C A PAAD 68490522 + 68490502 68490542 41 GCAAGAAAAGCAAATCGAAGCGTATGTTATATTTAAAAATT GCAAGAAAAGCAAATAGAAGCGTATGTTATATTTAAAAATT < 41bp 1 0.188160947053469 1 0.235926926136017 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CENPH ENSG00000153044 CDS Human protein_coding chr5:68490522 chr5:68490517 synonymous SNV . 0 16 hm5C_associated_SNPs_31328 0 0 0 0 1 CENPH chr5:68490474 3'AG 68490474 Downstream 44bp
chr7 43580819 43580819 1 + C T PAAD 43580837 + 43580817 43580857 41 GACGCTTTCTTCACGAGGCCCTTCTACAAGGCACTCCTGAG GATGCTTTCTTCACGAGGCCCTTCTACAAGGCACTCCTGAG < 41bp 1 0.0367385724984085 1 0.0741919577121735 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43580837 chr7:43580819 synonymous SNV . 0 3 hm5C_associated_SNPs_31329 0 0 0 0 2 HECW1 chr7:43580762 3'AG 43580762 Downstream 58bp
chr7 43580819 43580819 1 + C T PAAD 43580837 + 43580817 43580857 41 GACGCTTTCTTCACGAGGCCCTTCTACAAGGCACTCCTGAG GATGCTTTCTTCACGAGGCCCTTCTACAAGGCACTCCTGAG < 41bp 1 0.0367385724984085 1 0.0741919577121735 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43580837 chr7:43580819 synonymous SNV . 0 3 hm5C_associated_SNPs_31329 0 0 0 0 2 HECW1 chr7:43580860 5'GT 43580860 Upstream 42bp
chr7 23221735 23221735 1 + C G PAAD 23221740 + 23221720 23221760 41 TTCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTG TTCTTCCTTCAAGGCGGGTGCCGCTTTGGAGATCGGTGCTG < 41bp 1 0.439512728100936 1 0.229033052921295 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221740 chr7:23221735 nonsynonymous SNV 0.999 4 16 hm5C_associated_SNPs_31337 0 0 1 0 1 NUPL2 chr7:23221825 5'GT 23221825 Upstream 91bp
chr7 23221735 23221735 1 + C G PAAD 23221741 + 23221721 23221761 41 TCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTGG TCTTCCTTCAAGGCGGGTGCCGCTTTGGAGATCGGTGCTGG < 41bp 1 0.581063909255532 1 0.0929826200008392 experiment 0.837872181488935 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221741 chr7:23221735 nonsynonymous SNV 0.999 4 15 hm5C_associated_SNPs_31338 0 0 1 0 1 NUPL2 chr7:23221825 5'GT 23221825 Upstream 91bp
chr1 27269375 27269375 1 + T C PAAD 27269371 + 27269351 27269391 41 GCCCTATGCAGCTGGCGGTCCCTTTCTGTGTGAACTTCCGG GCCCTATGCAGCTGGCGGTCCCTTCCTGTGTGAACTTCCGG < 41bp 1 0.00999135654792157 1 0.0262914597988129 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUDC ENSG00000090273 CDS Human protein_coding chr1:27269371 chr1:27269375 nonsynonymous SNV 0.264 1 25 hm5C_associated_SNPs_31339 0 0 1 0 1 NUDC chr1:27269362 3'AG 27269362 Downstream 14bp
chr2 158157422 158157422 1 + C T PAAD 158157419 + 158157399 158157439 41 ACCTCACCCAGCAAAGGGAGCTGCGAAAGAAACTGAAGTGC ACCTCACCCAGCAAAGGGAGCTGTGAAAGAAACTGAAGTGC < 41bp 1 0.330342368038729 1 0.246036022901535 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT5 ENSG00000136542 CDS Human protein_coding chr2:158157419 chr2:158157422 stopgain 0.993 1 24 hm5C_associated_SNPs_31340 0 0 0 0 1 GALNT5 chr2:158157511 5'GT 158157511 Upstream 90bp
chr8 54793583 54793583 1 + C T PAAD 54793600 + 54793580 54793620 41 GCACGGCGGACGGAGGCGAGCCGGCCGGGGCTTCCTCCCCG GCATGGCGGACGGAGGCGAGCCGGCCGGGGCTTCCTCCCCG < 41bp 1 0.674652224489961 1 0.238914579153061 experiment 0.650695551020077 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RGS20 ENSG00000147509 CDS Human protein_coding chr8:54793600 chr8:54793583 nonsynonymous SNV 0.704 1 4 hm5C_associated_SNPs_31341 0 0 1 0 1 RGS20 chr8:54793644 5'GT 54793644 Upstream 62bp
chr8 54793583 54793583 1 + C T PAAD 54793601 + 54793581 54793621 41 CACGGCGGACGGAGGCGAGCCGGCCGGGGCTTCCTCCCCGG CATGGCGGACGGAGGCGAGCCGGCCGGGGCTTCCTCCCCGG < 41bp 1 0.79511498669557 1 0.541901707649231 experiment 0.409770026608861 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RGS20 ENSG00000147509 CDS Human protein_coding chr8:54793601 chr8:54793583 nonsynonymous SNV 0.704 1 3 hm5C_associated_SNPs_31342 0 0 1 0 1 RGS20 chr8:54793644 5'GT 54793644 Upstream 62bp
chrX 2632474 2632474 1 + G T PAAD 2632489 + 2632469 2632509 41 GTTTCGATTTATCCGATGCCCTTCCTGGTGAGTATCAACAT GTTTCTATTTATCCGATGCCCTTCCTGGTGAGTATCAACAT < 41bp 1 0.0850871101257207 1 0.046071857213974 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD99 ENSG00000002586 CDS Human protein_coding chrX:2632489 chrX:2632474 nonsynonymous SNV 0.081 3 6 hm5C_associated_SNPs_31343 0 0 1 0 2 CD99 chrX:2632463 3'AG 2632463 Downstream 12bp
chrX 2632474 2632474 1 + G T PAAD 2632489 + 2632469 2632509 41 GTTTCGATTTATCCGATGCCCTTCCTGGTGAGTATCAACAT GTTTCTATTTATCCGATGCCCTTCCTGGTGAGTATCAACAT < 41bp 1 0.0850871101257207 1 0.046071857213974 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD99 ENSG00000002586 CDS Human protein_coding chrX:2632489 chrX:2632474 nonsynonymous SNV 0.081 3 6 hm5C_associated_SNPs_31343 0 0 1 0 2 CD99 chrX:2632495 5'GT 2632495 Upstream 22bp
chr9 35733435 35733435 1 + T C PAAD 35733415 + 35733395 35733435 41 GATTGCTAGGCTAGTACTGACAGATGAGGAGAAGAGTCTAT GATTGCTAGGCTAGTACTGACAGATGAGGAGAAGAGTCTAC < 41bp 1 0.413784616515766 1 0.204895824193954 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733415 chr9:35733435 synonymous SNV . 0 41 hm5C_associated_SNPs_31344 0 0 1 0 2 CREB3 chr9:35733393 3'AG 35733393 Downstream 43bp
chr9 35733435 35733435 1 + T C PAAD 35733415 + 35733395 35733435 41 GATTGCTAGGCTAGTACTGACAGATGAGGAGAAGAGTCTAT GATTGCTAGGCTAGTACTGACAGATGAGGAGAAGAGTCTAC < 41bp 1 0.413784616515766 1 0.204895824193954 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733415 chr9:35733435 synonymous SNV . 0 41 hm5C_associated_SNPs_31344 0 0 1 0 2 CREB3 chr9:35733482 5'GT 35733482 Upstream 48bp
chr11 1254409 1254409 1 + C A PAAD 1254403 + 1254383 1254423 41 GCGGGCACCTTCCTCAATGACGCGGGCGCCTGTGTGCCCGC GCGGGCACCTTCCTCAATGACGCGGGAGCCTGTGTGCCCGC < 41bp 1 0.594372056920188 1 0.903658330440521 experiment 0.811255886159623 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout MUC5B ENSG00000117983 CDS Human protein_coding chr11:1254403 chr11:1254409 synonymous SNV . 0 27 hm5C_associated_SNPs_31345 0 0 0 0 1 MUC5B chr11:1254498 5'GT 1254498 Upstream 90bp
chr11 67810964 67810964 1 + G T PAAD 67810957 + 67810937 67810977 41 GGAGCAGCCGCTGGAGCACCCCGTGACGGTGAGCAGCTGGC GGAGCAGCCGCTGGAGCACCCCGTGACTGTGAGCAGCTGGC < 41bp 1 0.222546910896635 1 0.451175272464752 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67810957 chr11:67810964 synonymous SNV . 0 28 hm5C_associated_SNPs_31346 0 0 1 0 1 TCIRG1 chr11:67810964 5'GT 67810964 Upstream 1bp
chr9 95869990 95869990 1 + G A PAAD 95869992 + 95869972 95870012 41 CCGCCTGGTGCAGGACACGCCTTTCCTGACAGGCCATGGGC CCGCCTGGTGCAGGACACACCTTTCCTGACAGGCCATGGGC < 41bp 1 0.0756340923083865 1 0.10735297203064 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARD19 ENSG00000165233 CDS Human protein_coding chr9:95869992 chr9:95869990 synonymous SNV . 0 19 hm5C_associated_SNPs_31347 0 0 1 0 1 CARD19 chr9:95869956 3'AG 95869956 Downstream 35bp
chr11 473950 473950 1 + G A PAAD 473956 + 473936 473976 41 TCACACAAGCTAAAGACGGGCCATTTTCCAGACCTCATCCA TCACACAAGCTAAAAACGGGCCATTTTCCAGACCTCATCCA < 41bp 1 0.0258045529739431 1 0.0180736184120178 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTDSS2 ENSG00000174915 CDS Human protein_coding chr11:473956 chr11:473950 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_31348 0 0 0 0 2 PTDSS2 chr11:473895 3'AG 473895 Downstream 56bp
chr11 473950 473950 1 + G A PAAD 473956 + 473936 473976 41 TCACACAAGCTAAAGACGGGCCATTTTCCAGACCTCATCCA TCACACAAGCTAAAAACGGGCCATTTTCCAGACCTCATCCA < 41bp 1 0.0258045529739431 1 0.0180736184120178 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTDSS2 ENSG00000174915 CDS Human protein_coding chr11:473956 chr11:473950 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_31348 0 0 0 0 2 PTDSS2 chr11:473977 5'GT 473977 Upstream 28bp
chr4 7533314 7533314 1 + C T PAAD 7533294 + 7533274 7533314 41 CGTCCTACACCAAGCTCACCCTCCAGCCTGGTGTCACCACC CGTCCTACACCAAGCTCACCCTCCAGCCTGGTGTCACCACT < 41bp 1 0.557564607570793 1 0.975684762001038 experiment 0.884870784858414 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SORCS2 ENSG00000184985 CDS Human protein_coding chr4:7533294 chr4:7533314 synonymous SNV . 0 41 hm5C_associated_SNPs_31350 0 0 0 0 2 SORCS2 chr4:7533257 3'AG 7533257 Downstream 58bp
chr4 7533314 7533314 1 + C T PAAD 7533294 + 7533274 7533314 41 CGTCCTACACCAAGCTCACCCTCCAGCCTGGTGTCACCACC CGTCCTACACCAAGCTCACCCTCCAGCCTGGTGTCACCACT < 41bp 1 0.557564607570793 1 0.975684762001038 experiment 0.884870784858414 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SORCS2 ENSG00000184985 CDS Human protein_coding chr4:7533294 chr4:7533314 synonymous SNV . 0 41 hm5C_associated_SNPs_31350 0 0 0 0 2 SORCS2 chr4:7533356 5'GT 7533356 Upstream 43bp
chr1 154207157 154207157 1 + C A PAAD 154207147 + 154207127 154207167 41 ACGGAATCCAATGAGGAAGGCAAAGAAAATCGAGACCGGGA ACGGAATCCAATGAGGAAGGCAAAGAAAATAGAGACCGGGA < 41bp 1 0.430217841429471 1 0.411491364240646 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154207147 chr1:154207157 synonymous SNV . 0 31 hm5C_associated_SNPs_31351 0 0 1 0 1 UBAP2L chr1:154207067 3'AG 154207067 Downstream 91bp
chr18 48604705 48604705 1 + G A PAAD 48604710 + 48604690 48604730 41 TTTTGTGAAAGGCTGGGGACCGGATTACCCAAGACAGAGCA TTTTGTGAAAGGCTGAGGACCGGATTACCCAAGACAGAGCA < 41bp 1 0.458473442082879 1 0.731878042221069 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48604710 chr18:48604705 stopgain 0.998 1 16 hm5C_associated_SNPs_31352 1 0 1 0 1 SMAD4 chr18:48604626 3'AG 48604626 Downstream 80bp
chr7 43810766 43810766 1 + A T PAAD 43810765 + 43810745 43810785 41 GGAAGAGACCAAGATGAATGCAGAGGTGAGTTCTTTACAAA GGAAGAGACCAAGATGAATGCTGAGGTGAGTTCTTTACAAA < 41bp 1 0.696926903910173 1 0.502149820327759 experiment 0.606146192179655 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BLVRA ENSG00000106605 CDS Human protein_coding chr7:43810765 chr7:43810766 synonymous SNV . 0 22 hm5C_associated_SNPs_31353 0 0 1 0 2 BLVRA chr7:43810737 3'AG 43810737 Downstream 30bp
chr7 43810766 43810766 1 + A T PAAD 43810765 + 43810745 43810785 41 GGAAGAGACCAAGATGAATGCAGAGGTGAGTTCTTTACAAA GGAAGAGACCAAGATGAATGCTGAGGTGAGTTCTTTACAAA < 41bp 1 0.696926903910173 1 0.502149820327759 experiment 0.606146192179655 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BLVRA ENSG00000106605 CDS Human protein_coding chr7:43810765 chr7:43810766 synonymous SNV . 0 22 hm5C_associated_SNPs_31353 0 0 1 0 2 BLVRA chr7:43810769 5'GT 43810769 Upstream 4bp
chr7 142458439 142458439 1 + T C PAAD 142458431 + 142458411 142458451 41 GCCCCCTTTGATGATGATGACAAGATCGTTGGGGGCTACAA GCCCCCTTTGATGATGATGACAAGATCGCTGGGGGCTACAA < 41bp 1 0.711530963661066 1 0.324319303035736 experiment 0.576938072677868 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458431 chr7:142458439 nonsynonymous SNV 0.200 3 29 hm5C_associated_SNPs_31354 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 34bp
chr7 142458439 142458439 1 + T C PAAD 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATGACAAGATCGCTGGGGGCTACAACTGTGA < 41bp 1 0.451318751441227 1 0.166263580322266 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458439 nonsynonymous SNV 0.200 3 23 hm5C_associated_SNPs_31355 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 34bp
chr7 142458439 142458439 1 + T C PAAD 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGCTGGGGGCTACAACTGTGAGGAGAATTC < 41bp 1 0.353277703253588 1 0.437577098608017 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458439 nonsynonymous SNV 0.200 3 14 hm5C_associated_SNPs_31356 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 34bp
chr7 142458439 142458439 1 + T C PAAD 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGCTGGGGGCTACAACTGTGAGGAGAATTCTGT < 41bp 1 0.177459193445648 1 0.190087109804153 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458439 nonsynonymous SNV 0.200 3 11 hm5C_associated_SNPs_31357 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 34bp
chr7 142458439 142458439 1 + T C PAAD 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGCTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC < 41bp 1 0.39825047370171 1 0.340169847011566 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458439 nonsynonymous SNV 0.200 3 8 hm5C_associated_SNPs_31358 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 34bp
chr11 58347089 58347089 1 + G A PAAD 58347094 + 58347074 58347114 41 GCAAGAAGAGTCCGCGACTCCTGTGAGTAACAGTCTTTCAG GCAAGAAGAGTCCGCAACTCCTGTGAGTAACAGTCTTTCAG < 41bp 1 0.699294152960504 1 0.217726081609726 experiment 0.601411694078991 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58347094 chr11:58347089 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_31359 0 0 1 0 1 ZFP91 chr11:58347095 5'GT 58347095 Upstream 7bp
chr2 171818252 171818252 1 + A C PAAD 171818251 + 171818231 171818271 41 ACCAATGAATCCAGCTACTACATTACCAGGTAACCACCAGG ACCAATGAATCCAGCTACTACCTTACCAGGTAACCACCAGG < 41bp 1 0.0704670744971442 1 0.125041037797928 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171818251 chr2:171818252 synonymous SNV . 0 22 hm5C_associated_SNPs_31363 0 0 1 0 2 GORASP2 chr2:171818173 3'AG 171818173 Downstream 80bp
chr2 171818252 171818252 1 + A C PAAD 171818251 + 171818231 171818271 41 ACCAATGAATCCAGCTACTACATTACCAGGTAACCACCAGG ACCAATGAATCCAGCTACTACCTTACCAGGTAACCACCAGG < 41bp 1 0.0704670744971442 1 0.125041037797928 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171818251 chr2:171818252 synonymous SNV . 0 22 hm5C_associated_SNPs_31363 0 0 1 0 2 GORASP2 chr2:171818259 5'GT 171818259 Upstream 8bp
chr7 100204241 100204241 1 + C T PAAD 100204239 + 100204219 100204259 41 TCCGGAGAAAACAGAGGAATCTCCTTCAGCCCCTGGTGAGT TCCGGAGAAAACAGAGGAATCTTCTTCAGCCCCTGGTGAGT < 41bp 1 0.158091835570243 1 0.0828092098236084 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100204239 chr7:100204241 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_31364 0 0 0 0 1 PCOLCE chr7:100204253 5'GT 100204253 Upstream 13bp
chr20 42695426 42695426 1 + A T PAAD 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCTTCCAA < 41bp 1 0.420164031377042 1 0.18125307559967 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695426 nonsynonymous SNV 0.905 0 36 hm5C_associated_SNPs_31365 0 0 0 0 2 TOX2 chr20:42695370 3'AG 42695370 Downstream 57bp
chr20 42695426 42695426 1 + A T PAAD 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCTTCCAA < 41bp 1 0.420164031377042 1 0.18125307559967 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695426 nonsynonymous SNV 0.905 0 36 hm5C_associated_SNPs_31365 0 0 0 0 2 TOX2 chr20:42695497 5'GT 42695497 Upstream 72bp
chr16 16150130 16150130 1 + C T PAAD 16150150 + 16150130 16150170 41 CCTGGGTCTGCACGCCCTTTCTGGTGAGTGAAGCCACATTT TCTGGGTCTGCACGCCCTTTCTGGTGAGTGAAGCCACATTT < 41bp 1 0.69495163404404 1 0.616272330284119 experiment 0.610096731911921 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16150150 chr16:16150130 nonsynonymous SNV 0.955 4 1 hm5C_associated_SNPs_31369 0 0 1 0 1 ABCC1 chr16:16150152 5'GT 16150152 Upstream 23bp
chr15 40756141 40756141 1 + C G PAAD 40756137 + 40756117 40756157 41 ACAATCCGAGTCCGGGACACCGTCCTTCTCAAATCAGGCCC ACAATCCGAGTCCGGGACACCGTCGTTCTCAAATCAGGCCC < 41bp 1 0.503727361964104 1 0.150436878204346 experiment 0.992545276071792 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40756137 chr15:40756141 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_31370 0 0 0 0 2 BAHD1 chr15:40756060 3'AG 40756060 Downstream 82bp
chr15 40756141 40756141 1 + C G PAAD 40756137 + 40756117 40756157 41 ACAATCCGAGTCCGGGACACCGTCCTTCTCAAATCAGGCCC ACAATCCGAGTCCGGGACACCGTCGTTCTCAAATCAGGCCC < 41bp 1 0.503727361964104 1 0.150436878204346 experiment 0.992545276071792 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40756137 chr15:40756141 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_31370 0 0 0 0 2 BAHD1 chr15:40756219 5'GT 40756219 Upstream 79bp
chr16 29819148 29819148 1 + C T PAAD 29819141 + 29819121 29819161 41 TGCTCCCACTGTGGCAAGAGCTTCTCCCGGTGTGCACGGGG TGCTCCCACTGTGGCAAGAGCTTCTCCTGGTGTGCACGGGG < 41bp 1 0.122830054567178 1 0.118446946144104 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAZ ENSG00000103495 CDS Human protein_coding chr16:29819141 chr16:29819148 nonsynonymous SNV 0.999 3 28 hm5C_associated_SNPs_31373 0 0 1 0 1 MAZ chr16:29819149 5'GT 29819149 Upstream 2bp
chr17 29554565 29554565 1 + T A PCPG 29554583 + 29554563 29554603 41 AATGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA AAAGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA < 41bp 1 0.104130429213277 1 0.0754954516887665 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29554583 chr17:29554565 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_31377 0 0 1 0 2 NF1 chr17:29554541 3'AG 29554541 Downstream 25bp
chr17 29554565 29554565 1 + T A PCPG 29554583 + 29554563 29554603 41 AATGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA AAAGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA < 41bp 1 0.104130429213277 1 0.0754954516887665 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29554583 chr17:29554565 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_31377 0 0 1 0 2 NF1 chr17:29554624 5'GT 29554624 Upstream 60bp
chr15 52339183 52339183 1 + C T PCPG 52339181 + 52339161 52339201 41 GATAGGTGACTTTGGTCTTGCACGGATCATGGATCCTCATT GATAGGTGACTTTGGTCTTGCATGGATCATGGATCCTCATT < 41bp 1 0.580525755434437 1 0.243615359067917 experiment 0.838948489131126 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52339181 chr15:52339183 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_31379 0 0 1 0 1 MAPK6 chr15:52339212 5'GT 52339212 Upstream 30bp
chr2 46607406 46607406 1 + A G PCPG 46607394 + 46607374 46607414 41 CAATGAGCTGGACTTGGAGACACTGGCACCCTATATCCCCA CAATGAGCTGGACTTGGAGACACTGGCACCCTGTATCCCCA < 41bp 1 0.339188955312691 1 0.150430858135223 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46607394 chr2:46607406 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_31380 0 0 1 0 1 EPAS1 chr2:46607366 3'AG 46607366 Downstream 41bp
chr10 115661652 115661652 1 + C A PCPG 115661650 + 115661630 115661670 41 CTCGTAGGAGGAGAAAGAGACCCCATGGTAATGACAGTCAC CTCGTAGGAGGAGAAAGAGACCACATGGTAATGACAGTCAC < 41bp 1 0.683933769537 1 0.234959602355957 experiment 0.632132460926 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115661650 chr10:115661652 nonsynonymous SNV 0.974 4 23 hm5C_associated_SNPs_31381 0 0 1 0 1 NHLRC2 chr10:115661656 5'GT 115661656 Upstream 5bp
chr10 115661652 115661652 1 + C A PCPG 115661651 + 115661631 115661671 41 TCGTAGGAGGAGAAAGAGACCCCATGGTAATGACAGTCACT TCGTAGGAGGAGAAAGAGACCACATGGTAATGACAGTCACT < 41bp 1 0.492962702857516 1 0.516550719738007 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115661651 chr10:115661652 nonsynonymous SNV 0.974 4 22 hm5C_associated_SNPs_31382 0 0 1 0 1 NHLRC2 chr10:115661656 5'GT 115661656 Upstream 5bp
chr9 130197489 130197489 1 + C T PCPG 130197488 + 130197468 130197508 41 GGAAAGTCCAGGAGCCTTGTCCTACTAGGTAAGGAAACTGT GGAAAGTCCAGGAGCCTTGTCTTACTAGGTAAGGAAACTGT < 41bp 1 0.0708582562942933 1 0.0426547527313232 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF79 ENSG00000196152 CDS Human protein_coding chr9:130197488 chr9:130197489 synonymous SNV . 0 22 hm5C_associated_SNPs_31383 0 0 1 0 1 ZNF79 chr9:130197495 5'GT 130197495 Upstream 7bp
chr19 14574926 14574926 1 + G A PCPG 14574942 + 14574922 14574962 41 CTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCCCATCGAGC CTCAAAAGAGCTCGCGGGATCCTCCTTCCAGCCCATCGAGC < 41bp 1 0.0562652761111307 1 0.226233571767807 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574942 chr19:14574926 synonymous SNV . 0 5 hm5C_associated_SNPs_31384 0 0 1 0 2 PKN1 chr19:14574872 3'AG 14574872 Downstream 55bp
chr19 14574926 14574926 1 + G A PCPG 14574942 + 14574922 14574962 41 CTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCCCATCGAGC CTCAAAAGAGCTCGCGGGATCCTCCTTCCAGCCCATCGAGC < 41bp 1 0.0562652761111307 1 0.226233571767807 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574942 chr19:14574926 synonymous SNV . 0 5 hm5C_associated_SNPs_31384 0 0 1 0 2 PKN1 chr19:14574965 5'GT 14574965 Upstream 40bp
chr2 46607400 46607400 1 + C T PCPG 46607394 + 46607374 46607414 41 CAATGAGCTGGACTTGGAGACACTGGCACCCTATATCCCCA CAATGAGCTGGACTTGGAGACACTGGTACCCTATATCCCCA < 41bp 1 0.396521405018456 1 0.138660818338394 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46607394 chr2:46607400 nonsynonymous SNV 1.000 5 27 hm5C_associated_SNPs_31385 0 0 1 0 1 EPAS1 chr2:46607366 3'AG 46607366 Downstream 35bp
chr2 46607402 46607402 1 + C T PCPG 46607394 + 46607374 46607414 41 CAATGAGCTGGACTTGGAGACACTGGCACCCTATATCCCCA CAATGAGCTGGACTTGGAGACACTGGCATCCTATATCCCCA < 41bp 1 0.317929900688158 1 0.132356822490692 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46607394 chr2:46607402 nonsynonymous SNV 1.000 5 29 hm5C_associated_SNPs_31386 0 0 1 0 1 EPAS1 chr2:46607366 3'AG 46607366 Downstream 37bp
chr2 46607403 46607403 1 + C T PCPG 46607394 + 46607374 46607414 41 CAATGAGCTGGACTTGGAGACACTGGCACCCTATATCCCCA CAATGAGCTGGACTTGGAGACACTGGCACTCTATATCCCCA < 41bp 1 0.28909532361758 1 0.16081503033638 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46607394 chr2:46607403 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_31387 0 0 1 0 1 EPAS1 chr2:46607366 3'AG 46607366 Downstream 38bp
chr19 36579971 36579971 1 + G T PCPG 36579965 + 36579945 36579985 41 AGAGACATCCAGATGATCAGCTGTGGGGCTGACAAGAGCAT AGAGACATCCAGATGATCAGCTGTGGTGCTGACAAGAGCAT < 41bp 1 0.27666932174229 1 0.170216083526611 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36579965 chr19:36579971 synonymous SNV . 0 27 hm5C_associated_SNPs_31388 0 0 1 0 2 WDR62 chr19:36579940 3'AG 36579940 Downstream 32bp
chr19 36579971 36579971 1 + G T PCPG 36579965 + 36579945 36579985 41 AGAGACATCCAGATGATCAGCTGTGGGGCTGACAAGAGCAT AGAGACATCCAGATGATCAGCTGTGGTGCTGACAAGAGCAT < 41bp 1 0.27666932174229 1 0.170216083526611 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36579965 chr19:36579971 synonymous SNV . 0 27 hm5C_associated_SNPs_31388 0 0 1 0 2 WDR62 chr19:36580007 5'GT 36580007 Upstream 37bp
chr20 30366768 30366768 1 + G T PCPG 30366771 + 30366751 30366791 41 AACAGATATCATTTGAGGAGCAAGAAGGATGATATTAGTAA AACAGATATCATTTGAGTAGCAAGAAGGATGATATTAGTAA < 41bp 1 0.597795949848354 1 0.287963032722473 experiment 0.804408100303292 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30366771 chr20:30366768 nonsynonymous SNV 0.996 4 18 hm5C_associated_SNPs_31389 0 0 1 0 1 TPX2 chr20:30366787 5'GT 30366787 Upstream 20bp
chr13 28854620 28854620 1 + A T PCPG 28854635 + 28854615 28854655 41 ATTTTATACTCAATTGGATGCTGCTCAAATGAGAAATGATG ATTTTTTACTCAATTGGATGCTGCTCAAATGAGAAATGATG < 41bp 1 0.135547533801572 1 0.141248971223831 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAN3 ENSG00000152520 CDS Human protein_coding chr13:28854635 chr13:28854620 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_31390 0 0 1 0 2 PAN3 chr13:28854549 3'AG 28854549 Downstream 72bp
chr13 28854620 28854620 1 + A T PCPG 28854635 + 28854615 28854655 41 ATTTTATACTCAATTGGATGCTGCTCAAATGAGAAATGATG ATTTTTTACTCAATTGGATGCTGCTCAAATGAGAAATGATG < 41bp 1 0.135547533801572 1 0.141248971223831 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAN3 ENSG00000152520 CDS Human protein_coding chr13:28854635 chr13:28854620 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_31390 0 0 1 0 2 PAN3 chr13:28854678 5'GT 28854678 Upstream 59bp
chrX 107930801 107930801 1 + C A PCPG 107930815 + 107930795 107930835 41 GGATTTCTTATTACACGCCACAGCCAGACAACGGATGCACC GGATTTATTATTACACGCCACAGCCAGACAACGGATGCACC < 41bp 1 0.0827689875493947 1 0.0741916596889496 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107930815 chrX:107930801 nonsynonymous SNV 0.996 2 7 hm5C_associated_SNPs_31391 0 0 0 0 1 COL4A5 chrX:107930712 3'AG 107930712 Downstream 90bp
chr16 1551468 1551468 1 + C G PCPG 1551467 + 1551447 1551487 41 GCTGCTGGCCTTGGCCTCCCCCCAGCCTGCGGGTGACGGCG GCTGCTGGCCTTGGCCTCCCCGCAGCCTGCGGGTGACGGCG < 41bp 1 0.659252759091568 1 0.744426250457764 experiment 0.681494481816864 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1551467 chr16:1551468 synonymous SNV . 0 22 hm5C_associated_SNPs_31392 0 0 1 0 2 TELO2 chr16:1551421 3'AG 1551421 Downstream 48bp
chr16 1551468 1551468 1 + C G PCPG 1551467 + 1551447 1551487 41 GCTGCTGGCCTTGGCCTCCCCCCAGCCTGCGGGTGACGGCG GCTGCTGGCCTTGGCCTCCCCGCAGCCTGCGGGTGACGGCG < 41bp 1 0.659252759091568 1 0.744426250457764 experiment 0.681494481816864 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1551467 chr16:1551468 synonymous SNV . 0 22 hm5C_associated_SNPs_31392 0 0 1 0 2 TELO2 chr16:1551500 5'GT 1551500 Upstream 33bp
chr16 2732747 2732747 1 + G A PCPG 2732745 + 2732725 2732765 41 GGCAGACCCTGTGCCGGGACCCGAAATCCTTCCTGTACCGC GGCAGACCCTGTGCCGGGACCCAAAATCCTTCCTGTACCGC < 41bp 1 0.36149958884602 1 0.308103203773499 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD5 ENSG00000167977 CDS Human protein_coding chr16:2732745 chr16:2732747 synonymous SNV . 0 23 hm5C_associated_SNPs_31393 0 0 1 0 1 KCTD5 chr16:2732801 5'GT 2732801 Upstream 55bp
chr5 138651823 138651823 1 + C T PCPG 138651827 + 138651807 138651847 41 AGGAATTCTGGGACCTCCACCTCCCTCATTTCATCTTGGGG AGGAATTCTGGGACCTTCACCTCCCTCATTTCATCTTGGGG < 41bp 1 0.333448366852707 1 0.447630256414413 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MATR3 ENSG00000015479 CDS Human protein_coding chr5:138651827 chr5:138651823 nonsynonymous SNV 0.988 3 17 hm5C_associated_SNPs_31394 0 0 1 0 2 MATR3 chr5:138651765 3'AG 138651765 Downstream 59bp
chr5 138651823 138651823 1 + C T PCPG 138651827 + 138651807 138651847 41 AGGAATTCTGGGACCTCCACCTCCCTCATTTCATCTTGGGG AGGAATTCTGGGACCTTCACCTCCCTCATTTCATCTTGGGG < 41bp 1 0.333448366852707 1 0.447630256414413 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MATR3 ENSG00000015479 CDS Human protein_coding chr5:138651827 chr5:138651823 nonsynonymous SNV 0.988 3 17 hm5C_associated_SNPs_31394 0 0 1 0 2 MATR3 chr5:138651877 5'GT 138651877 Upstream 55bp
chr2 231931688 231931688 1 + C A PCPG 231931696 + 231931676 231931716 41 GGAGAAAAAAAACCAATTGACCAGAGATTGGAAGGCATCGT GGAGAAAAAAAAACAATTGACCAGAGATTGGAAGGCATCGT < 41bp 1 0.571035527246587 1 0.0851923227310181 experiment 0.857928945506825 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231931696 chr2:231931688 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_31395 0 0 1 0 1 PSMD1 chr2:231931620 3'AG 231931620 Downstream 69bp
chr5 21491513 21491513 1 + G A PCPG 21491518 + 21491498 21491538 41 TCAGAAAACAAAGTCGTGGACAACCAGGCTGGGACCCAGGG TCAGAAAACAAAGTCATGGACAACCAGGCTGGGACCCAGGG < 41bp 1 0.137841923727441 1 0.0885415971279144 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21491518 chr5:21491513 . . 0 16 hm5C_associated_SNPs_31396 0 0 1 0 1 GUSBP1 chr5:21491430 3'AG 21491430 Downstream 84bp
chr20 60701439 60701439 1 + G T PCPG 60701448 + 60701428 60701468 41 GGCGCCCTACGGCCCGCTGGCGGCCAGCTCCCTGCTCAGCC GGCGCCCTACGTCCCGCTGGCGGCCAGCTCCCTGCTCAGCC < 41bp 1 0.604538324658357 1 0.304646730422974 experiment 0.790923350683286 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSM14B ENSG00000149657 CDS Human protein_coding chr20:60701448 chr20:60701439 nonsynonymous SNV 0.919 2 12 hm5C_associated_SNPs_31397 0 0 1 0 2 LSM14B chr20:60701360 3'AG 60701360 Downstream 80bp
chr20 60701439 60701439 1 + G T PCPG 60701448 + 60701428 60701468 41 GGCGCCCTACGGCCCGCTGGCGGCCAGCTCCCTGCTCAGCC GGCGCCCTACGTCCCGCTGGCGGCCAGCTCCCTGCTCAGCC < 41bp 1 0.604538324658357 1 0.304646730422974 experiment 0.790923350683286 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSM14B ENSG00000149657 CDS Human protein_coding chr20:60701448 chr20:60701439 nonsynonymous SNV 0.919 2 12 hm5C_associated_SNPs_31397 0 0 1 0 2 LSM14B chr20:60701495 5'GT 60701495 Upstream 57bp
chr2 28550178 28550178 1 + G A PCPG 28550197 + 28550177 28550217 41 GGAGCAAGTCCTGGCCTTTGCAGTTGCAAAAACTGGCTGCA GAAGCAAGTCCTGGCCTTTGCAGTTGCAAAAACTGGCTGCA < 41bp 1 0.394031424990474 1 0.459323704242706 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BABAM2 ENSG00000158019 CDS Human protein_coding chr2:28550197 chr2:28550178 nonsynonymous SNV 0.540 1 2 hm5C_associated_SNPs_31398 0 0 0 0 1 BABAM2 chr2:28550141 3'AG 28550141 Downstream 38bp
chr19 45797661 45797661 1 + C T PCPG 45797648 + 45797628 45797668 41 ATGACCCGCAGAAACACCTACGTTTGCACAGAACGCCCGGG ATGACCCGCAGAAACACCTACGTTTGCACAGAATGCCCGGG < 41bp 1 0.0472861375313378 1 0.0518009960651398 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45797648 chr19:45797661 nonsynonymous SNV 0.796 4 34 hm5C_associated_SNPs_31399 0 0 1 0 2 MARK4 chr19:45797607 3'AG 45797607 Downstream 55bp
chr19 45797661 45797661 1 + C T PCPG 45797648 + 45797628 45797668 41 ATGACCCGCAGAAACACCTACGTTTGCACAGAACGCCCGGG ATGACCCGCAGAAACACCTACGTTTGCACAGAATGCCCGGG < 41bp 1 0.0472861375313378 1 0.0518009960651398 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45797648 chr19:45797661 nonsynonymous SNV 0.796 4 34 hm5C_associated_SNPs_31399 0 0 1 0 2 MARK4 chr19:45797710 5'GT 45797710 Upstream 50bp
chr10 31812941 31812941 1 + G T PCPG 31812931 + 31812911 31812951 41 GAATGACTCTGATTCTACACCGCCCAAAAAGAAAATGCGGA GAATGACTCTGATTCTACACCGCCCAAAAATAAAATGCGGA < 41bp 1 0.232483066822577 1 0.367946684360504 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZEB1 ENSG00000148516 CDS Human protein_coding chr10:31812931 chr10:31812941 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_31402 0 0 1 0 1 ZEB1 chr10:31812861 3'AG 31812861 Downstream 81bp
chr9 130434339 130434339 1 + C T PCPG 130434344 + 130434324 130434364 41 TTACAGACCACCATGCGGGACCTGTCCCAGATGCTGAAGAA TTACAGACCACCATGTGGGACCTGTCCCAGATGCTGAAGAA < 41bp 1 0.0351894758617711 1 0.0587117671966553 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130434344 chr9:130434339 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_31403 0 0 1 0 2 STXBP1 chr9:130434330 3'AG 130434330 Downstream 10bp
chr9 130434339 130434339 1 + C T PCPG 130434344 + 130434324 130434364 41 TTACAGACCACCATGCGGGACCTGTCCCAGATGCTGAAGAA TTACAGACCACCATGTGGGACCTGTCCCAGATGCTGAAGAA < 41bp 1 0.0351894758617711 1 0.0587117671966553 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130434344 chr9:130434339 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_31403 0 0 1 0 2 STXBP1 chr9:130434395 5'GT 130434395 Upstream 57bp
chr14 71570317 71570317 1 + T G PCPG 71570324 + 71570304 71570344 41 AGCCACGAACAGCTTAAAGACATTCTTGGGGGTCCTATCAG AGCCACGAACAGCGTAAAGACATTCTTGGGGGTCCTATCAG < 41bp 1 0.0670648677116523 1 0.130319148302078 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71570324 chr14:71570317 nonsynonymous SNV 0.970 4 14 hm5C_associated_SNPs_31404 0 0 1 0 1 PCNX1 chr14:71570386 5'GT 71570386 Upstream 70bp
chr7 23207596 23207596 1 + G T PCPG 23207600 + 23207580 23207620 41 TGTGGTGGAAGTTTAGGAAACAATGTTTCTGGGAGAGTGCT TGTGGTGGAAGTTTAGTAAACAATGTTTCTGGGAGAGTGCT < 41bp 1 0.419872441070545 1 0.0981455147266388 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLHL7 ENSG00000122550 CDS Human protein_coding chr7:23207600 chr7:23207596 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_31405 0 0 1 0 1 KLHL7 chr7:23207656 5'GT 23207656 Upstream 61bp
chr16 816649 816649 1 + T G PCPG 816657 + 816637 816677 41 CCACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCC CCACAAGGCTCCGCGGCGGCCCCTCCCACAGGTGGCCACCC < 41bp 1 0.0218419582506243 1 0.149924904108047 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816657 chr16:816649 synonymous SNV . 0 13 hm5C_associated_SNPs_31406 0 0 0 0 1 MSLN chr16:816644 3'AG 816644 Downstream 6bp
chr16 816649 816649 1 + T G PCPG 816658 + 816638 816678 41 CACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCCT CACAAGGCTCCGCGGCGGCCCCTCCCACAGGTGGCCACCCT < 41bp 1 0.0143158251464094 1 0.0957443714141846 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816658 chr16:816649 synonymous SNV . 0 12 hm5C_associated_SNPs_31407 0 0 0 0 1 MSLN chr16:816644 3'AG 816644 Downstream 6bp
chr7 100775170 100775170 1 + T C PRAD 100775150 + 100775130 100775170 41 CTTCCTGATCATTGATTTTCCCATAGGTATGATCAGCAACT CTTCCTGATCATTGATTTTCCCATAGGTATGATCAGCAACC < 41bp 1 0.265332608440997 1 0.0528745353221893 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100775150 chr7:100775170 synonymous SNV . 0 41 hm5C_associated_SNPs_31411 0 0 1 0 1 SERPINE1 chr7:100775156 3'AG 100775156 Downstream 15bp
chr1 156202161 156202161 1 + C T PRAD 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGTGATGACACAGCAAATCTATGACAAGTTTATA < 41bp 1 0.103315316238677 1 0.146287709474564 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202161 nonsynonymous SNV 0.890 0 10 hm5C_associated_SNPs_31414 0 0 1 0 2 PMF1;PMF1-BGLAP chr1:156202111 3'AG 156202111 Downstream 51bp
chr1 156202161 156202161 1 + C T PRAD 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGTGATGACACAGCAAATCTATGACAAGTTTATA < 41bp 1 0.103315316238677 1 0.146287709474564 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202161 nonsynonymous SNV 0.890 0 10 hm5C_associated_SNPs_31414 0 0 1 0 2 PMF1;PMF1-BGLAP chr1:156202216 5'GT 156202216 Upstream 56bp
chr6 35438057 35438057 1 + C T PRAD 35438048 + 35438028 35438068 41 TAAATAAGGCAGGAAAGTTCCCTTCCCTGCTCACACACAAC TAAATAAGGCAGGAAAGTTCCCTTCCCTGTTCACACACAAC < 41bp 1 0.0223667427698294 1 0.124905675649643 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL10A ENSG00000198755 CDS Human protein_coding chr6:35438048 chr6:35438057 nonsynonymous SNV 0.996 4 30 hm5C_associated_SNPs_31415 0 0 1 0 1 RPL10A chr6:35438128 5'GT 35438128 Upstream 72bp
chr8 143781999 143781999 1 + C T PRAD 143782018 + 143781998 143782038 41 ACGCCAACCTGACTGCGAGACAACGAGATCCAGAGGACTCC ATGCCAACCTGACTGCGAGACAACGAGATCCAGAGGACTCC < 41bp 1 0.638139251969822 1 0.0972592234611511 experiment 0.723721496060356 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LY6K ENSG00000160886 CDS Human protein_coding chr8:143782018 chr8:143781999 synonymous SNV . 0 2 hm5C_associated_SNPs_31416 0 0 0 0 1 LY6K chr8:143782048 5'GT 143782048 Upstream 50bp
chr8 100182325 100182325 1 + C T PRAD 100182330 + 100182310 100182350 41 GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAGC GATCTTACTGCTTACTTGTACCAGTTATTCCCTCTTTCAGC < 41bp 1 0.0859366637208492 1 0.103050649166107 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100182330 chr8:100182325 nonsynonymous SNV 0.999 1 16 hm5C_associated_SNPs_31417 0 0 1 0 2 VPS13B chr8:100182267 3'AG 100182267 Downstream 59bp
chr8 100182325 100182325 1 + C T PRAD 100182330 + 100182310 100182350 41 GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAGC GATCTTACTGCTTACTTGTACCAGTTATTCCCTCTTTCAGC < 41bp 1 0.0859366637208492 1 0.103050649166107 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100182330 chr8:100182325 nonsynonymous SNV 0.999 1 16 hm5C_associated_SNPs_31417 0 0 1 0 2 VPS13B chr8:100182391 5'GT 100182391 Upstream 67bp
chr8 92090653 92090653 1 + G A PRAD 92090658 + 92090638 92090678 41 ATTGAAAACTTAACAGGAGCCAGACATATGGAAAGTGAGAA ATTGAAAACTTAACAAGAGCCAGACATATGGAAAGTGAGAA < 41bp 1 0.469634199961024 1 0.346044838428497 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OTUD6B ENSG00000155100 CDS Human protein_coding chr8:92090658 chr8:92090653 nonsynonymous SNV 0.997 4 16 hm5C_associated_SNPs_31418 0 0 1 0 1 OTUD6B chr8:92090584 3'AG 92090584 Downstream 70bp
chrX 70516423 70516423 1 + G A PRAD 70516419 + 70516399 70516439 41 TTGTTCTTTCTTCCAGATTTCCTCGTCCTGTGACTGTGGAG TTGTTCTTTCTTCCAGATTTCCTCATCCTGTGACTGTGGAG < 41bp 1 0.164648516487008 1 0.0791921615600586 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516419 chrX:70516423 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_31419 0 0 1 0 2 NONO chrX:70516415 3'AG 70516415 Downstream 9bp
chrX 70516423 70516423 1 + G A PRAD 70516419 + 70516399 70516439 41 TTGTTCTTTCTTCCAGATTTCCTCGTCCTGTGACTGTGGAG TTGTTCTTTCTTCCAGATTTCCTCATCCTGTGACTGTGGAG < 41bp 1 0.164648516487008 1 0.0791921615600586 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516419 chrX:70516423 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_31419 0 0 1 0 2 NONO chrX:70516510 5'GT 70516510 Upstream 88bp
chrX 70516423 70516423 1 + G A PRAD 70516440 + 70516420 70516460 41 CTCGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT CTCATCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT < 41bp 1 0.0974494346329075 1 0.074492335319519 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516440 chrX:70516423 nonsynonymous SNV 0.997 2 4 hm5C_associated_SNPs_31420 0 0 1 0 2 NONO chrX:70516415 3'AG 70516415 Downstream 9bp
chrX 70516423 70516423 1 + G A PRAD 70516440 + 70516420 70516460 41 CTCGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT CTCATCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT < 41bp 1 0.0974494346329075 1 0.074492335319519 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516440 chrX:70516423 nonsynonymous SNV 0.997 2 4 hm5C_associated_SNPs_31420 0 0 1 0 2 NONO chrX:70516510 5'GT 70516510 Upstream 88bp
chr10 43285947 43285947 1 + G A PRAD 43285946 + 43285926 43285966 41 ATTAAAACACAGGTTCTGGACGGAAGTTTACCCGGTACGAA ATTAAAACACAGGTTCTGGACAGAAGTTTACCCGGTACGAA < 41bp 1 0.663381453683204 1 0.383385956287384 experiment 0.673237092633592 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BMS1 ENSG00000165733 CDS Human protein_coding chr10:43285946 chr10:43285947 synonymous SNV . 0 22 hm5C_associated_SNPs_31421 0 0 1 0 1 BMS1 chr10:43285959 5'GT 43285959 Upstream 13bp
chr19 50302915 50302915 1 + G T PRAD 50302928 + 50302908 50302948 41 GGCAGCGGGCGGCTGACCTCCTCTACGCCATGTGTGACCGG GGCAGCGTGCGGCTGACCTCCTCTACGCCATGTGTGACCGG < 41bp 1 0.630517263215771 1 0.771962881088257 experiment 0.738965473568458 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50302928 chr19:50302915 synonymous SNV . 0 8 hm5C_associated_SNPs_31422 0 0 1 0 1 AP2A1 chr19:50302886 3'AG 50302886 Downstream 30bp
chr19 14020732 14020732 1 + G A PRAD 14020742 + 14020722 14020762 41 GGCTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCA GGCTTTGGTCAGGGGCCAGCCCCCAGCCCTGGAGAAGCTCA < 41bp 1 0.405887678479943 1 0.855999708175659 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020742 chr19:14020732 nonsynonymous SNV 0.932 3 11 hm5C_associated_SNPs_31424 0 0 1 0 2 CC2D1A chr19:14020636 3'AG 14020636 Downstream 97bp
chr19 14020732 14020732 1 + G A PRAD 14020742 + 14020722 14020762 41 GGCTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCA GGCTTTGGTCAGGGGCCAGCCCCCAGCCCTGGAGAAGCTCA < 41bp 1 0.405887678479943 1 0.855999708175659 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020742 chr19:14020732 nonsynonymous SNV 0.932 3 11 hm5C_associated_SNPs_31424 0 0 1 0 2 CC2D1A chr19:14020771 5'GT 14020771 Upstream 40bp
chr19 14020732 14020732 1 + G A PRAD 14020743 + 14020723 14020763 41 GCTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAA GCTTTGGTCAGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAA < 41bp 1 0.234454097971245 1 0.444519698619843 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020743 chr19:14020732 nonsynonymous SNV 0.932 3 10 hm5C_associated_SNPs_31425 0 0 1 0 2 CC2D1A chr19:14020636 3'AG 14020636 Downstream 97bp
chr19 14020732 14020732 1 + G A PRAD 14020743 + 14020723 14020763 41 GCTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAA GCTTTGGTCAGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAA < 41bp 1 0.234454097971245 1 0.444519698619843 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020743 chr19:14020732 nonsynonymous SNV 0.932 3 10 hm5C_associated_SNPs_31425 0 0 1 0 2 CC2D1A chr19:14020771 5'GT 14020771 Upstream 40bp
chr19 14020732 14020732 1 + G A PRAD 14020744 + 14020724 14020764 41 CTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAA CTTTGGTCAGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAA < 41bp 1 0.109725851628507 1 0.480218350887299 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020744 chr19:14020732 nonsynonymous SNV 0.932 3 9 hm5C_associated_SNPs_31426 0 0 1 0 2 CC2D1A chr19:14020636 3'AG 14020636 Downstream 97bp
chr19 14020732 14020732 1 + G A PRAD 14020744 + 14020724 14020764 41 CTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAA CTTTGGTCAGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAA < 41bp 1 0.109725851628507 1 0.480218350887299 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020744 chr19:14020732 nonsynonymous SNV 0.932 3 9 hm5C_associated_SNPs_31426 0 0 1 0 2 CC2D1A chr19:14020771 5'GT 14020771 Upstream 40bp
chr19 14020732 14020732 1 + G A PRAD 14020745 + 14020725 14020765 41 TTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAAG TTTGGTCAGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAAG < 41bp 1 0.423987087307192 1 0.535374045372009 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020745 chr19:14020732 nonsynonymous SNV 0.932 3 8 hm5C_associated_SNPs_31427 0 0 1 0 2 CC2D1A chr19:14020636 3'AG 14020636 Downstream 97bp
chr19 14020732 14020732 1 + G A PRAD 14020745 + 14020725 14020765 41 TTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAAG TTTGGTCAGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAAG < 41bp 1 0.423987087307192 1 0.535374045372009 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020745 chr19:14020732 nonsynonymous SNV 0.932 3 8 hm5C_associated_SNPs_31427 0 0 1 0 2 CC2D1A chr19:14020771 5'GT 14020771 Upstream 40bp
chr2 109365442 109365442 1 + C T PRAD 109365446 + 109365426 109365466 41 ATTGTTGAAACTTTTGCCAACAAAAGCGGGCAGTCTGCATT ATTGTTGAAACTTTTGTCAACAAAAGCGGGCAGTCTGCATT < 41bp 1 0.411182925407615 1 0.13994699716568 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109365446 chr2:109365442 nonsynonymous SNV 0.979 3 17 hm5C_associated_SNPs_31428 0 0 1 0 1 RANBP2 chr2:109365376 3'AG 109365376 Downstream 67bp
chr17 37883719 37883719 1 + C T PRAD 37883734 + 37883714 37883754 41 TACAGCGGTACAGTGAGGACCCCACAGTACCCCTGCCCTCT TACAGTGGTACAGTGAGGACCCCACAGTACCCCTGCCCTCT < 41bp 1 0.062432951944905 1 0.0969861447811127 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37883734 chr17:37883719 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_31429 0 0 0 0 1 ERBB2 chr17:37883800 5'GT 37883800 Upstream 82bp
chr10 12148384 12148384 1 + T G PRAD 12148373 + 12148353 12148393 41 TTCAATGGTGCCCAGATCATCTTTGACACATTCATCTCTGG TTCAATGGTGCCCAGATCATCTTTGACACATGCATCTCTGG < 41bp 1 0.145284850215579 1 0.156202733516693 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12148373 chr10:12148384 nonsynonymous SNV 0.993 3 32 hm5C_associated_SNPs_31430 0 0 0 0 1 DHTKD1 chr10:12148395 5'GT 12148395 Upstream 12bp
chr1 39908220 39908220 1 + T C PRAD 39908204 + 39908184 39908224 41 AGAGACCAATAAGTGGAGACCCAAAAGTCATTGAAGTTGAG AGAGACCAATAAGTGGAGACCCAAAAGTCATTGAAGCTGAG < 41bp 1 0.0651045539155401 1 0.49465012550354 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39908204 chr1:39908220 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_31431 0 0 1 0 1 MACF1 chr1:39908239 5'GT 39908239 Upstream 20bp
chr15 64418402 64418402 1 + C T PRAD 64418395 + 64418375 64418415 41 AGAATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTC AGAATGGCTTCATTGTCCCTCCGCCCCTGGAGAAGAGCCTC < 41bp 1 0.0997540408563657 1 0.327610433101654 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418395 chr15:64418402 nonsynonymous SNV 0.966 4 28 hm5C_associated_SNPs_31432 0 0 1 0 1 SNX1 chr15:64418419 5'GT 64418419 Upstream 18bp
chr15 64418402 64418402 1 + C T PRAD 64418396 + 64418376 64418416 41 GAATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTCA GAATGGCTTCATTGTCCCTCCGCCCCTGGAGAAGAGCCTCA < 41bp 1 0.246215417211709 1 0.316763877868652 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418396 chr15:64418402 nonsynonymous SNV 0.966 4 27 hm5C_associated_SNPs_31433 0 0 1 0 1 SNX1 chr15:64418419 5'GT 64418419 Upstream 18bp
chr15 64418402 64418402 1 + C T PRAD 64418398 + 64418378 64418418 41 ATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTCATA ATGGCTTCATTGTCCCTCCGCCCCTGGAGAAGAGCCTCATA < 41bp 1 0.169949626055326 1 0.0607319176197052 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418398 chr15:64418402 nonsynonymous SNV 0.966 4 25 hm5C_associated_SNPs_31434 0 0 1 0 1 SNX1 chr15:64418419 5'GT 64418419 Upstream 18bp
chrX 69370144 69370144 1 + G A PRAD 69370124 + 69370104 69370144 41 GTGACTGGTATGAGCAACATCGGAAATATGGAGCATTACCG GTGACTGGTATGAGCAACATCGGAAATATGGAGCATTACCA < 41bp 1 0.798424027964472 1 0.480901300907135 experiment 0.403151944071056 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69370124 chrX:69370144 synonymous SNV . 0 41 hm5C_associated_SNPs_31435 0 0 1 0 1 IGBP1 chrX:69370172 5'GT 69370172 Upstream 29bp
chr1 156105740 156105740 1 + C T PRAD 156105721 + 156105701 156105741 41 AAGGAGGCGAAGCTTCGAGACCTGGAGGACTCACTGGCCCG AAGGAGGCGAAGCTTCGAGACCTGGAGGACTCACTGGCCTG < 41bp 1 0.398462753788153 1 0.367861360311508 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156105721 chr1:156105740 nonsynonymous SNV 0.999 5 40 hm5C_associated_SNPs_31436 0 0 1 0 1 LMNA chr1:156105692 3'AG 156105692 Downstream 49bp
chr1 156105740 156105740 1 + C T PRAD 156105730 + 156105710 156105750 41 AAGCTTCGAGACCTGGAGGACTCACTGGCCCGTGAGCGGGA AAGCTTCGAGACCTGGAGGACTCACTGGCCTGTGAGCGGGA < 41bp 1 0.247070241668215 1 0.194838762283325 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156105730 chr1:156105740 nonsynonymous SNV 0.999 5 31 hm5C_associated_SNPs_31437 0 0 1 0 1 LMNA chr1:156105692 3'AG 156105692 Downstream 49bp
chr15 91433508 91433508 1 + G A PRAD 91433493 + 91433473 91433513 41 CTCCTGCAGGATGACCGCCACTCCACGTCGTCCTCGGTGAG CTCCTGCAGGATGACCGCCACTCCACGTCGTCCTCAGTGAG < 41bp 1 0.78003341404211 1 0.954173803329468 experiment 0.43993317191578 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control FES ENSG00000182511 CDS Human protein_coding chr15:91433493 chr15:91433508 synonymous SNV . 0 36 hm5C_associated_SNPs_31439 0 0 0 0 1 FES chr15:91433508 5'GT 91433508 Upstream 1bp
chr1 158063224 158063224 1 + C A PRAD 158063221 + 158063201 158063241 41 CCTTGGTATTCTTCCTCTACCGGCGCCGCAAAGGCAGTGAG CCTTGGTATTCTTCCTCTACCGGAGCCGCAAAGGCAGTGAG < 41bp 1 0.591268244655971 1 0.471996814012527 experiment 0.817463510688059 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063221 chr1:158063224 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_31440 0 0 0 0 2 KIRREL chr1:158063129 3'AG 158063129 Downstream 96bp
chr1 158063224 158063224 1 + C A PRAD 158063221 + 158063201 158063241 41 CCTTGGTATTCTTCCTCTACCGGCGCCGCAAAGGCAGTGAG CCTTGGTATTCTTCCTCTACCGGAGCCGCAAAGGCAGTGAG < 41bp 1 0.591268244655971 1 0.471996814012527 experiment 0.817463510688059 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063221 chr1:158063224 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_31440 0 0 0 0 2 KIRREL chr1:158063236 5'GT 158063236 Upstream 13bp
chr19 33077770 33077770 1 + G C PRAD 33077768 + 33077748 33077788 41 TTTCTGGTTCTCCTAGGTATCAGAACAAGGTTTAATAGAAA TTTCTGGTTCTCCTAGGTATCACAACAAGGTTTAATAGAAA < 41bp 1 0.571325979159937 1 0.595406532287598 experiment 0.857348041680126 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD5 ENSG00000105185 CDS Human protein_coding chr19:33077768 chr19:33077770 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_31445 0 0 1 0 2 PDCD5 chr19:33077764 3'AG 33077764 Downstream 7bp
chr19 33077770 33077770 1 + G C PRAD 33077768 + 33077748 33077788 41 TTTCTGGTTCTCCTAGGTATCAGAACAAGGTTTAATAGAAA TTTCTGGTTCTCCTAGGTATCACAACAAGGTTTAATAGAAA < 41bp 1 0.571325979159937 1 0.595406532287598 experiment 0.857348041680126 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD5 ENSG00000105185 CDS Human protein_coding chr19:33077768 chr19:33077770 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_31445 0 0 1 0 2 PDCD5 chr19:33077835 5'GT 33077835 Upstream 66bp
chr16 90028248 90028248 1 + C G PRAD 90028230 + 90028210 90028250 41 TGGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAA TGGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACAGAA < 41bp 1 0.389751157653576 1 0.246823191642761 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028230 chr16:90028248 nonsynonymous SNV 0.928 4 39 hm5C_associated_SNPs_31446 0 0 1 0 1 DEF8 chr16:90028272 5'GT 90028272 Upstream 25bp
chr16 90028248 90028248 1 + C G PRAD 90028231 + 90028211 90028251 41 GGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAAC GGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACAGAAC < 41bp 1 0.106385182802891 1 0.343831151723862 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028231 chr16:90028248 nonsynonymous SNV 0.928 4 38 hm5C_associated_SNPs_31447 0 0 1 0 1 DEF8 chr16:90028272 5'GT 90028272 Upstream 25bp
chr9 106858474 106858474 1 + G C PRAD 106858485 + 106858465 106858505 41 AATGGGCAGGCTGGTATTACCAAAGCCTCTGTGTCAATCAC AATGGGCAGCCTGGTATTACCAAAGCCTCTGTGTCAATCAC < 41bp 1 0.549986167101129 1 0.495968282222748 experiment 0.900027665797742 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMC2 ENSG00000136824 CDS Human protein_coding chr9:106858485 chr9:106858474 nonsynonymous SNV 0.994 4 10 hm5C_associated_SNPs_31449 0 0 1 0 1 SMC2 chr9:106858429 3'AG 106858429 Downstream 46bp
chr6 88374517 88374517 1 + C T PRAD 88374522 + 88374502 88374542 41 CGCCCCAGACATCTGCATAGCATACAAACTGCACCTAGAGT CGCCCCAGACATCTGTATAGCATACAAACTGCACCTAGAGT < 41bp 1 0.104333963435798 1 0.0897960066795349 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ORC3 ENSG00000135336 CDS Human protein_coding chr6:88374522 chr6:88374517 synonymous SNV . 0 16 hm5C_associated_SNPs_31450 0 0 1 0 2 ORC3 chr6:88374461 3'AG 88374461 Downstream 57bp
chr6 88374517 88374517 1 + C T PRAD 88374522 + 88374502 88374542 41 CGCCCCAGACATCTGCATAGCATACAAACTGCACCTAGAGT CGCCCCAGACATCTGTATAGCATACAAACTGCACCTAGAGT < 41bp 1 0.104333963435798 1 0.0897960066795349 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ORC3 ENSG00000135336 CDS Human protein_coding chr6:88374522 chr6:88374517 synonymous SNV . 0 16 hm5C_associated_SNPs_31450 0 0 1 0 2 ORC3 chr6:88374577 5'GT 88374577 Upstream 61bp
chr2 235943706 235943706 1 + G T PRAD 235943692 + 235943672 235943712 41 CCAACTCCAATGGCCTCCCTCGCTGCAAGTCAGAGGGGACC CCAACTCCAATGGCCTCCCTCGCTGCAAGTCAGATGGGACC < 41bp 1 0.242956245674351 1 0.26824888586998 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235943692 chr2:235943706 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_31452 0 0 1 0 1 SH3BP4 chr2:235943764 5'GT 235943764 Upstream 59bp
chr8 22862091 22862091 1 + G A PRAD 22862102 + 22862082 22862122 41 GCTGGCCACGCATGTGCCCACAGTATGGGCCATCGACCAAT GCTGGCCACACATGTGCCCACAGTATGGGCCATCGACCAAT < 41bp 1 0.630800070284942 1 0.113513350486755 experiment 0.738399859430116 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22862102 chr8:22862091 synonymous SNV . 0 10 hm5C_associated_SNPs_31454 0 0 0 0 1 RHOBTB2 chr8:22862139 5'GT 22862139 Upstream 49bp
chr4 26407825 26407825 1 + C T PRAD 26407834 + 26407814 26407854 41 ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCAT ATTTAAAAGAGTGAGGGGATCAAACAGTACTTATTCTTCAT < 41bp 1 0.285270918737115 1 0.277459323406219 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBPJ ENSG00000168214 CDS Human protein_coding chr4:26407834 chr4:26407825 stopgain 1.000 1 12 hm5C_associated_SNPs_31455 0 0 1 0 2 RBPJ chr4:26407797 3'AG 26407797 Downstream 29bp
chr4 26407825 26407825 1 + C T PRAD 26407834 + 26407814 26407854 41 ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCAT ATTTAAAAGAGTGAGGGGATCAAACAGTACTTATTCTTCAT < 41bp 1 0.285270918737115 1 0.277459323406219 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBPJ ENSG00000168214 CDS Human protein_coding chr4:26407834 chr4:26407825 stopgain 1.000 1 12 hm5C_associated_SNPs_31455 0 0 1 0 2 RBPJ chr4:26407892 5'GT 26407892 Upstream 68bp
chr15 75632054 75632054 1 + G A PRAD 75632036 + 75632016 75632056 41 CTGAGAGCCACCCACCCCATCTCACAGTGAATAGGTTGGCA CTGAGAGCCACCCACCCCATCTCACAGTGAATAGGTTGACA < 41bp 1 0.281601006057122 1 0.0516687631607056 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control COMMD4 ENSG00000140365 CDS Human protein_coding chr15:75632036 chr15:75632054 nonsynonymous SNV 0.858 0 39 hm5C_associated_SNPs_31456 0 0 1 0 1 COMMD4 chr15:75632043 3'AG 75632043 Downstream 12bp
chr12 27835613 27835613 1 + C T PRAD 27835622 + 27835602 27835642 41 GGGTTGATGGTCGAATGCTACATTACATGACTGTTGTAAGT GGGTTGATGGTTGAATGCTACATTACATGACTGTTGTAAGT < 41bp 1 0.1843638037539 1 0.182738810777664 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27835622 chr12:27835613 stopgain 0.980 0 12 hm5C_associated_SNPs_31458 0 0 0 0 2 PPFIBP1 chr12:27835548 3'AG 27835548 Downstream 66bp
chr12 27835613 27835613 1 + C T PRAD 27835622 + 27835602 27835642 41 GGGTTGATGGTCGAATGCTACATTACATGACTGTTGTAAGT GGGTTGATGGTTGAATGCTACATTACATGACTGTTGTAAGT < 41bp 1 0.1843638037539 1 0.182738810777664 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27835622 chr12:27835613 stopgain 0.980 0 12 hm5C_associated_SNPs_31458 0 0 0 0 2 PPFIBP1 chr12:27835636 5'GT 27835636 Upstream 24bp
chr19 11474850 11474850 1 + G A PRAD 11474841 + 11474821 11474861 41 TGTCTCTTTGTCTCAGGAACCCGAGGTCTGCAGGCCGCATT TGTCTCTTTGTCTCAGGAACCCGAGGTCTACAGGCCGCATT < 41bp 1 0.507849844448195 1 0.910743653774261 experiment 0.98430031110361 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11474841 chr19:11474850 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_31460 0 0 1 0 2 PLPPR2 chr19:11474837 3'AG 11474837 Downstream 14bp
chr19 11474850 11474850 1 + G A PRAD 11474841 + 11474821 11474861 41 TGTCTCTTTGTCTCAGGAACCCGAGGTCTGCAGGCCGCATT TGTCTCTTTGTCTCAGGAACCCGAGGTCTACAGGCCGCATT < 41bp 1 0.507849844448195 1 0.910743653774261 experiment 0.98430031110361 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11474841 chr19:11474850 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_31460 0 0 1 0 2 PLPPR2 chr19:11474888 5'GT 11474888 Upstream 39bp
chr11 126215288 126215288 1 + T C PRAD 126215278 + 126215258 126215298 41 GCTACCGGATGAAGGGAGACCATCTGCGAGTATACCTGCAC GCTACCGGATGAAGGGAGACCATCTGCGAGCATACCTGCAC < 41bp 1 0.325130440464353 1 0.136977940797806 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DCPS ENSG00000110063 CDS Human protein_coding chr11:126215278 chr11:126215288 nonsynonymous SNV 0.524 2 31 hm5C_associated_SNPs_31461 0 0 1 0 1 DCPS chr11:126215242 3'AG 126215242 Downstream 47bp
chr15 41247791 41247791 1 + C T PRAD 41247789 + 41247769 41247809 41 GCGCCTGAAGAGGCCATTGCCACGCAGATCCTGGCCTGCCG GCGCCTGAAGAGGCCATTGCCATGCAGATCCTGGCCTGCCG < 41bp 1 0.564782184335614 1 0.710103869438171 experiment 0.870435631328772 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHAC1 ENSG00000128965 CDS Human protein_coding chr15:41247789 chr15:41247791 nonsynonymous SNV 0.266 0 23 hm5C_associated_SNPs_31469 0 0 1 0 1 CHAC1 chr15:41247748 3'AG 41247748 Downstream 44bp
chr19 14574936 14574936 1 + C T PRAD 14574942 + 14574922 14574962 41 CTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCCCATCGAGC CTCAGAAGAGCTCGTGGGATCCTCCTTCCAGCCCATCGAGC < 41bp 1 0.0577797421268617 1 0.127759516239166 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574942 chr19:14574936 nonsynonymous SNV 0.001 1 15 hm5C_associated_SNPs_31470 0 0 1 0 2 PKN1 chr19:14574872 3'AG 14574872 Downstream 65bp
chr19 14574936 14574936 1 + C T PRAD 14574942 + 14574922 14574962 41 CTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCCCATCGAGC CTCAGAAGAGCTCGTGGGATCCTCCTTCCAGCCCATCGAGC < 41bp 1 0.0577797421268617 1 0.127759516239166 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574942 chr19:14574936 nonsynonymous SNV 0.001 1 15 hm5C_associated_SNPs_31470 0 0 1 0 2 PKN1 chr19:14574965 5'GT 14574965 Upstream 30bp
chr19 804675 804675 1 + C T PRAD 804666 + 804646 804686 41 CTCAGGATCATCGTGGAGAACCTCTTCTACCCTGTGACCCT CTCAGGATCATCGTGGAGAACCTCTTCTATCCTGTGACCCT < 41bp 1 0.0812656851421877 1 0.014631062746048 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804666 chr19:804675 synonymous SNV . 0 30 hm5C_associated_SNPs_31471 0 0 1 0 1 PTBP1 chr19:804702 5'GT 804702 Upstream 28bp
chr19 804675 804675 1 + C T PRAD 804667 + 804647 804687 41 TCAGGATCATCGTGGAGAACCTCTTCTACCCTGTGACCCTG TCAGGATCATCGTGGAGAACCTCTTCTATCCTGTGACCCTG < 41bp 1 0.343009413890626 1 0.0264317989349365 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804667 chr19:804675 synonymous SNV . 0 29 hm5C_associated_SNPs_31472 0 0 1 0 1 PTBP1 chr19:804702 5'GT 804702 Upstream 28bp
chr19 804675 804675 1 + C T PRAD 804672 + 804652 804692 41 ATCATCGTGGAGAACCTCTTCTACCCTGTGACCCTGGATGT ATCATCGTGGAGAACCTCTTCTATCCTGTGACCCTGGATGT < 41bp 1 0.183088590457752 1 0.283838599920273 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804672 chr19:804675 synonymous SNV . 0 24 hm5C_associated_SNPs_31473 0 0 1 0 1 PTBP1 chr19:804702 5'GT 804702 Upstream 28bp
chr17 55191836 55191836 1 + G A PRAD 55191830 + 55191810 55191850 41 CCCTCTACAGCTCATGCTGCCTGATGGCATCACCGTGGAGG CCCTCTACAGCTCATGCTGCCTGATGACATCACCGTGGAGG < 41bp 1 0.251812521573427 1 0.12207892537117 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55191830 chr17:55191836 nonsynonymous SNV 0.997 3 27 hm5C_associated_SNPs_31474 0 0 1 1 1 AKAP1 chr17:55191820 3'AG 55191820 Downstream 17bp
chr19 1461079 1461079 1 + T C PRAD 1461096 + 1461076 1461116 41 ACATCAACAGCAAGAAGGTGCTGAGGGAGGCGGGCAGCGTG ACACCAACAGCAAGAAGGTGCTGAGGGAGGCGGGCAGCGTG < 41bp 1 0.249531748652152 1 0.413513839244843 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APC2 ENSG00000115266 CDS Human protein_coding chr19:1461096 chr19:1461079 nonsynonymous SNV 0.994 3 4 hm5C_associated_SNPs_31475 0 0 0 0 2 APC2 chr19:1461036 3'AG 1461036 Downstream 44bp
chr19 1461079 1461079 1 + T C PRAD 1461096 + 1461076 1461116 41 ACATCAACAGCAAGAAGGTGCTGAGGGAGGCGGGCAGCGTG ACACCAACAGCAAGAAGGTGCTGAGGGAGGCGGGCAGCGTG < 41bp 1 0.249531748652152 1 0.413513839244843 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APC2 ENSG00000115266 CDS Human protein_coding chr19:1461096 chr19:1461079 nonsynonymous SNV 0.994 3 4 hm5C_associated_SNPs_31475 0 0 0 0 2 APC2 chr19:1461152 5'GT 1461152 Upstream 74bp
chr5 68692341 68692341 1 + C T PRAD 68692324 + 68692304 68692344 41 TCATTGCCAAGGAGGAGGATCAAGTTTTCGACCCTTGCACA TCATTGCCAAGGAGGAGGATCAAGTTTTCGACCCTTGTACA < 41bp 1 0.63250647760514 1 0.469163239002228 experiment 0.734987044789719 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD17 ENSG00000152942 CDS Human protein_coding chr5:68692324 chr5:68692341 nonsynonymous SNV 0.994 2 38 hm5C_associated_SNPs_31477 0 0 1 0 1 RAD17 chr5:68692373 5'GT 68692373 Upstream 33bp
chr19 4323367 4323367 1 + C T PRAD 4323383 + 4323363 4323403 41 ATGCCCGCACCAAACAAGTGCTGCACACTTTCAAGACCAGG ATGCTCGCACCAAACAAGTGCTGCACACTTTCAAGACCAGG < 41bp 1 0.336753645844512 1 0.199519485235214 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FSD1 ENSG00000105255 CDS Human protein_coding chr19:4323383 chr19:4323367 nonsynonymous SNV 0.992 0 5 hm5C_associated_SNPs_31478 0 0 1 0 2 FSD1 chr19:4323345 3'AG 4323345 Downstream 23bp
chr19 4323367 4323367 1 + C T PRAD 4323383 + 4323363 4323403 41 ATGCCCGCACCAAACAAGTGCTGCACACTTTCAAGACCAGG ATGCTCGCACCAAACAAGTGCTGCACACTTTCAAGACCAGG < 41bp 1 0.336753645844512 1 0.199519485235214 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FSD1 ENSG00000105255 CDS Human protein_coding chr19:4323383 chr19:4323367 nonsynonymous SNV 0.992 0 5 hm5C_associated_SNPs_31478 0 0 1 0 2 FSD1 chr19:4323433 5'GT 4323433 Upstream 67bp
chr2 128944261 128944261 1 + T C PRAD 128944260 + 128944240 128944280 41 TTTTTTTAACCAAACAGGATCTGCCCAATAACATGATTCAT TTTTTTTAACCAAACAGGATCCGCCCAATAACATGATTCAT < 41bp 1 0.0159558962490533 1 0.128964871168137 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128944260 chr2:128944261 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_31479 0 0 1 0 1 UGGT1 chr2:128944257 3'AG 128944257 Downstream 5bp
chr2 105959571 105959571 1 + C T PRAD 105959573 + 105959553 105959593 41 AACAGAACCATGACTTAACGCATAGGAAAAGTCCTTCAGGC AACAGAACCATGACTTAATGCATAGGAAAAGTCCTTCAGGC < 41bp 1 0.474755963446343 1 0.544778823852539 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C2orf49 ENSG00000135974 CDS Human protein_coding chr2:105959573 chr2:105959571 nonsynonymous SNV 0.987 0 19 hm5C_associated_SNPs_31480 0 0 1 0 1 C2orf49 chr2:105959558 3'AG 105959558 Downstream 14bp
chr12 22208195 22208195 1 + G A PRAD 22208197 + 22208177 22208217 41 AGCTCTACCTCACTAGATGCCATCATAGAATTTCTTAATTA AGCTCTACCTCACTAGATACCATCATAGAATTTCTTAATTA < 41bp 1 0.543947369854039 1 0.0714987814426422 experiment 0.912105260291923 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208197 chr12:22208195 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_31481 0 0 1 2 1 CMAS chr12:22208225 5'GT 22208225 Upstream 31bp
chr16 457453 457453 1 + G A PRAD 457472 + 457452 457492 41 GGCCGGCGCTGCCTCCCTCTCTCTATGGACGTCCGAGCGCC GACCGGCGCTGCCTCCCTCTCTCTATGGACGTCCGAGCGCC < 41bp 1 0.781234054683464 1 0.933843016624451 experiment 0.437531890633073 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout DECR2 ENSG00000242612 CDS Human other chr16:457472 chr16:457453 nonsynonymous SNV 0.304 3 2 hm5C_associated_SNPs_31482 0 0 1 0 2 DECR2 chr16:457380 3'AG 457380 Downstream 74bp
chr16 457453 457453 1 + G A PRAD 457472 + 457452 457492 41 GGCCGGCGCTGCCTCCCTCTCTCTATGGACGTCCGAGCGCC GACCGGCGCTGCCTCCCTCTCTCTATGGACGTCCGAGCGCC < 41bp 1 0.781234054683464 1 0.933843016624451 experiment 0.437531890633073 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout DECR2 ENSG00000242612 CDS Human protein_coding chr16:457472 chr16:457453 nonsynonymous SNV 0.304 3 2 hm5C_associated_SNPs_31482 0 0 1 0 2 DECR2 chr16:457425 3'AG 457425 Downstream 29bp
chr1 162469789 162469789 1 + C T PRAD 162469797 + 162469777 162469817 41 TCTCCAAATGTGCCATCACGCTGTCTGTTGCTTGAACTCCT TCTCCAAATGTGTCATCACGCTGTCTGTTGCTTGAACTCCT < 41bp 1 0.306573419612141 1 0.259838879108429 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162469797 chr1:162469789 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_31483 0 0 1 0 1 UHMK1 chr1:162469745 3'AG 162469745 Downstream 45bp
chr1 57161695 57161695 1 + G A PRAD 57161696 + 57161676 57161716 41 CCCTCCCATTTGATGATGAGCATGTACCTACGTTATTTAAG CCCTCCCATTTGATGATGAACATGTACCTACGTTATTTAAG < 41bp 1 0.18615265765656 1 0.0252859890460968 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57161696 chr1:57161695 synonymous SNV . 0 20 hm5C_associated_SNPs_31484 0 0 1 0 1 PRKAA2 chr1:57161608 3'AG 57161608 Downstream 88bp
chr17 79663968 79663968 1 + T C PRAD 79663977 + 79663957 79663997 41 TGCACGGCGTGTACATGAGCCAGCCGGCCCCTGCCGCTGGC TGCACGGCGTGCACATGAGCCAGCCGGCCCCTGCCGCTGGC < 41bp 1 0.59832556616188 1 0.683139264583588 experiment 0.80334886767624 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79663977 chr17:79663968 nonsynonymous SNV 0.390 0 12 hm5C_associated_SNPs_31485 0 0 1 0 1 HGS chr17:79664028 5'GT 79664028 Upstream 61bp
chr17 79663968 79663968 1 + T C PRAD 79663980 + 79663960 79664000 41 ACGGCGTGTACATGAGCCAGCCGGCCCCTGCCGCTGGCCCC ACGGCGTGCACATGAGCCAGCCGGCCCCTGCCGCTGGCCCC < 41bp 1 0.365175492201995 1 0.512460350990295 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79663980 chr17:79663968 nonsynonymous SNV 0.390 0 9 hm5C_associated_SNPs_31486 0 0 1 0 1 HGS chr17:79664028 5'GT 79664028 Upstream 61bp
chr20 33764034 33764034 1 + T C PRAD 33764041 + 33764021 33764061 41 TCTAGAGCCCATGTCTTCTTCGAAGTGGCTGTGAATGGGAG TCTAGAGCCCATGCCTTCTTCGAAGTGGCTGTGAATGGGAG < 41bp 1 0.700868780890474 1 0.868622422218323 experiment 0.598262438219052 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PROCR ENSG00000101000 CDS Human protein_coding chr20:33764041 chr20:33764034 nonsynonymous SNV 0.984 0 14 hm5C_associated_SNPs_31488 0 0 1 0 1 PROCR chr20:33763971 3'AG 33763971 Downstream 64bp
chr22 38352843 38352843 1 + C T PRAD 38352823 + 38352803 38352843 41 ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCC ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCT < 41bp 1 0.700127813777463 1 0.554582357406616 experiment 0.599744372445074 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352823 chr22:38352843 synonymous SNV . 0 41 hm5C_associated_SNPs_31489 0 0 1 0 3 POLR2F chr22:38352780 3'AG 38352780 Downstream 64bp
chr22 38352843 38352843 1 + C T PRAD 38352823 + 38352803 38352843 41 ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCC ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCT < 41bp 1 0.700127813777463 1 0.554582357406616 experiment 0.599744372445074 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352823 chr22:38352843 synonymous SNV . 0 41 hm5C_associated_SNPs_31489 0 0 1 0 3 POLR2F chr22:38352849 5'GT 38352849 Upstream 7bp
chr22 38352843 38352843 1 + C T PRAD 38352823 + 38352803 38352843 41 ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCC ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCT < 41bp 1 0.700127813777463 1 0.554582357406616 experiment 0.599744372445074 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352823 chr22:38352843 synonymous SNV . 0 41 hm5C_associated_SNPs_31489 0 0 1 0 3 POLR2F chr22:38352908 5'GT 38352908 Upstream 66bp
chr22 38352843 38352843 1 + C T PRAD 38352831 + 38352811 38352851 41 GAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT GAGGATGAAGGGCTAGATGACTTGGAGAATGCTGAAGAGGT < 41bp 1 0.518857939286946 1 0.2125124335289 experiment 0.962284121426108 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352831 chr22:38352843 synonymous SNV . 0 33 hm5C_associated_SNPs_31490 0 0 1 0 3 POLR2F chr22:38352780 3'AG 38352780 Downstream 64bp
chr22 38352843 38352843 1 + C T PRAD 38352831 + 38352811 38352851 41 GAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT GAGGATGAAGGGCTAGATGACTTGGAGAATGCTGAAGAGGT < 41bp 1 0.518857939286946 1 0.2125124335289 experiment 0.962284121426108 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352831 chr22:38352843 synonymous SNV . 0 33 hm5C_associated_SNPs_31490 0 0 1 0 3 POLR2F chr22:38352849 5'GT 38352849 Upstream 7bp
chr22 38352843 38352843 1 + C T PRAD 38352831 + 38352811 38352851 41 GAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT GAGGATGAAGGGCTAGATGACTTGGAGAATGCTGAAGAGGT < 41bp 1 0.518857939286946 1 0.2125124335289 experiment 0.962284121426108 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352831 chr22:38352843 synonymous SNV . 0 33 hm5C_associated_SNPs_31490 0 0 1 0 3 POLR2F chr22:38352908 5'GT 38352908 Upstream 66bp
chr7 4825902 4825902 1 + C T PRAD 4825887 + 4825867 4825907 41 CCCTGGTCTTGCAGGGGAAGCGGCTGCAGTGGACTCGGAAG CCCTGGTCTTGCAGGGGAAGCGGCTGCAGTGGACTTGGAAG < 41bp 1 0.369580669764437 1 0.563921928405762 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4825887 chr7:4825902 nonsynonymous SNV 0.425 0 36 hm5C_associated_SNPs_31492 0 0 1 0 1 AP5Z1 chr7:4825881 3'AG 4825881 Downstream 22bp
chr19 10789860 10789860 1 + C T PRAD 10789854 + 10789834 10789874 41 CTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG CTCGCGTGCCCACCTGGGGTCCCCTCTGAGGCTGGGTAAGG < 41bp 1 0.11031013183484 1 0.0358666479587555 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789854 chr19:10789860 stopgain 0.989 1 27 hm5C_associated_SNPs_31493 0 0 1 0 2 ILF3 chr19:10789773 3'AG 10789773 Downstream 88bp
chr19 10789860 10789860 1 + C T PRAD 10789854 + 10789834 10789874 41 CTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG CTCGCGTGCCCACCTGGGGTCCCCTCTGAGGCTGGGTAAGG < 41bp 1 0.11031013183484 1 0.0358666479587555 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789854 chr19:10789860 stopgain 0.989 1 27 hm5C_associated_SNPs_31493 0 0 1 0 2 ILF3 chr19:10789868 5'GT 10789868 Upstream 9bp
chr19 10789860 10789860 1 + C T PRAD 10789855 + 10789835 10789875 41 TCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC TCGCGTGCCCACCTGGGGTCCCCTCTGAGGCTGGGTAAGGC < 41bp 1 0.0497304182972 1 0.0746383666992188 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789855 chr19:10789860 stopgain 0.989 1 26 hm5C_associated_SNPs_31494 0 0 1 0 2 ILF3 chr19:10789773 3'AG 10789773 Downstream 88bp
chr19 10789860 10789860 1 + C T PRAD 10789855 + 10789835 10789875 41 TCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC TCGCGTGCCCACCTGGGGTCCCCTCTGAGGCTGGGTAAGGC < 41bp 1 0.0497304182972 1 0.0746383666992188 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789855 chr19:10789860 stopgain 0.989 1 26 hm5C_associated_SNPs_31494 0 0 1 0 2 ILF3 chr19:10789868 5'GT 10789868 Upstream 9bp
chr16 78143685 78143685 1 + C T PRAD 78143695 + 78143675 78143715 41 ATTTGCCATACGGATGGGAACAAGAAACTGATGAGAACGGA ATTTGCCATATGGATGGGAACAAGAAACTGATGAGAACGGA < 41bp 1 0.406750975016885 1 0.405589878559113 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WWOX ENSG00000186153 CDS Human protein_coding chr16:78143695 chr16:78143685 nonsynonymous SNV 0.937 0 11 hm5C_associated_SNPs_31496 0 0 1 0 2 WWOX chr16:78143675 3'AG 78143675 Downstream 11bp
chr16 78143685 78143685 1 + C T PRAD 78143695 + 78143675 78143715 41 ATTTGCCATACGGATGGGAACAAGAAACTGATGAGAACGGA ATTTGCCATATGGATGGGAACAAGAAACTGATGAGAACGGA < 41bp 1 0.406750975016885 1 0.405589878559113 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WWOX ENSG00000186153 CDS Human protein_coding chr16:78143695 chr16:78143685 nonsynonymous SNV 0.937 0 11 hm5C_associated_SNPs_31496 0 0 1 0 2 WWOX chr16:78143732 5'GT 78143732 Upstream 48bp
chr19 39979204 39979204 1 + C T PRAD 39979223 + 39979203 39979243 41 ACGTGCGAACCGTGCTGGAGCACTATGCCCTGGAGGATGAC ATGTGCGAACCGTGCTGGAGCACTATGCCCTGGAGGATGAC < 41bp 1 0.452420427537754 1 0.0740809142589569 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TIMM50 ENSG00000105197 CDS Human protein_coding chr19:39979223 chr19:39979204 synonymous SNV . 0 2 hm5C_associated_SNPs_31497 0 0 1 0 2 TIMM50 chr19:39979179 3'AG 39979179 Downstream 26bp
chr19 39979204 39979204 1 + C T PRAD 39979223 + 39979203 39979243 41 ACGTGCGAACCGTGCTGGAGCACTATGCCCTGGAGGATGAC ATGTGCGAACCGTGCTGGAGCACTATGCCCTGGAGGATGAC < 41bp 1 0.452420427537754 1 0.0740809142589569 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TIMM50 ENSG00000105197 CDS Human protein_coding chr19:39979223 chr19:39979204 synonymous SNV . 0 2 hm5C_associated_SNPs_31497 0 0 1 0 2 TIMM50 chr19:39979285 5'GT 39979285 Upstream 82bp
chr19 42848911 42848911 1 + G A PRAD 42848907 + 42848887 42848927 41 TTCGTCACGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT TTCGTCACGTCCCTGGAGGCCTGCATCACCCAGAGCTTCCT < 41bp 1 0.442018912071312 1 0.48008930683136 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42848907 chr19:42848911 nonsynonymous SNV 0.808 0 25 hm5C_associated_SNPs_31498 0 0 0 0 2 MEGF8 chr19:42848822 3'AG 42848822 Downstream 90bp
chr19 42848911 42848911 1 + G A PRAD 42848907 + 42848887 42848927 41 TTCGTCACGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT TTCGTCACGTCCCTGGAGGCCTGCATCACCCAGAGCTTCCT < 41bp 1 0.442018912071312 1 0.48008930683136 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42848907 chr19:42848911 nonsynonymous SNV 0.808 0 25 hm5C_associated_SNPs_31498 0 0 0 0 2 MEGF8 chr19:42848985 5'GT 42848985 Upstream 75bp
chr10 118313343 118313343 1 + C T PRAD 118313333 + 118313313 118313353 41 TGGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTT TGGAAGGAGAACCAATGGGACCATTGGACGTATCACAGGTT < 41bp 1 0.105184345755409 1 0.100712180137634 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313333 chr10:118313343 synonymous SNV . 0 31 hm5C_associated_SNPs_31499 0 0 0 0 1 PNLIP chr10:118313350 5'GT 118313350 Upstream 8bp
chr10 118313343 118313343 1 + C T PRAD 118313334 + 118313314 118313354 41 GGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTTG GGAAGGAGAACCAATGGGACCATTGGACGTATCACAGGTTG < 41bp 1 0.426053198193853 1 0.208462357521057 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313334 chr10:118313343 synonymous SNV . 0 30 hm5C_associated_SNPs_31500 0 0 0 0 1 PNLIP chr10:118313350 5'GT 118313350 Upstream 8bp
chr1 223943318 223943318 1 + G T PRAD 223943301 + 223943281 223943321 41 TTCAGAAGCACCGACGGCGGCAGAGGAAGATGGGCGAGGAC TTCAGAAGCACCGACGGCGGCAGAGGAAGATGGGCGATGAC < 41bp 1 0.700825281322784 1 0.593195140361786 experiment 0.598349437354432 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943301 chr1:223943318 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_31501 0 0 1 0 1 CAPN2 chr1:223943351 5'GT 223943351 Upstream 34bp
chr19 36594100 36594100 1 + C T PRAD 36594096 + 36594076 36594116 41 GCTGAAGAGACCCTGGAGGCCTGGCGCCCACCACGTGAGTG GCTGAAGAGACCCTGGAGGCCTGGTGCCCACCACGTGAGTG < 41bp 1 0.594232408994236 1 0.283011347055435 experiment 0.811535182011528 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36594096 chr19:36594100 nonsynonymous SNV 0.040 0 25 hm5C_associated_SNPs_31503 0 0 1 0 2 WDR62 chr19:36594058 3'AG 36594058 Downstream 43bp
chr19 36594100 36594100 1 + C T PRAD 36594096 + 36594076 36594116 41 GCTGAAGAGACCCTGGAGGCCTGGCGCCCACCACGTGAGTG GCTGAAGAGACCCTGGAGGCCTGGTGCCCACCACGTGAGTG < 41bp 1 0.594232408994236 1 0.283011347055435 experiment 0.811535182011528 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36594096 chr19:36594100 nonsynonymous SNV 0.040 0 25 hm5C_associated_SNPs_31503 0 0 1 0 2 WDR62 chr19:36594109 5'GT 36594109 Upstream 10bp
chr4 524247 524247 1 + G A PRAD 524262 + 524242 524282 41 GTTTTGTTTATGTCTTTGTCCTTGGCATTCTGTTCACGGGC GTTTTATTTATGTCTTTGTCCTTGGCATTCTGTTCACGGGC < 41bp 1 0.290552164516762 1 0.303731977939606 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIGG ENSG00000174227 CDS Human protein_coding chr4:524262 chr4:524247 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_31504 0 0 1 0 1 PIGG chr4:524225 3'AG 524225 Downstream 23bp
chr1 120269491 120269491 1 + C T PRAD 120269481 + 120269461 120269501 41 TCTATCCTTGCAGGCAGATTCCCCAGGCGACGGCTTCGATG TCTATCCTTGCAGGCAGATTCCCCAGGCGATGGCTTCGATG < 41bp 1 0.758245323895986 1 0.270674407482147 experiment 0.483509352208029 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120269481 chr1:120269491 nonsynonymous SNV 0.648 1 31 hm5C_associated_SNPs_31506 2 0 1 0 2 PHGDH chr1:120269474 3'AG 120269474 Downstream 18bp
chr1 120269491 120269491 1 + C T PRAD 120269481 + 120269461 120269501 41 TCTATCCTTGCAGGCAGATTCCCCAGGCGACGGCTTCGATG TCTATCCTTGCAGGCAGATTCCCCAGGCGATGGCTTCGATG < 41bp 1 0.758245323895986 1 0.270674407482147 experiment 0.483509352208029 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120269481 chr1:120269491 nonsynonymous SNV 0.648 1 31 hm5C_associated_SNPs_31506 2 0 1 0 2 PHGDH chr1:120269528 5'GT 120269528 Upstream 38bp
chr22 23596133 23596133 1 + C T PRAD 23596125 + 23596105 23596145 41 AGCAGCAAGGGCAGGGGCAGCCGGGATGCGCTGGTCTCGGG AGCAGCAAGGGCAGGGGCAGCCGGGATGTGCTGGTCTCGGG < 41bp 1 0.625022537879916 1 0.672729313373566 experiment 0.749954924240168 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23596125 chr22:23596133 nonsynonymous SNV 0.459 0 29 hm5C_associated_SNPs_31507 0 0 1 0 1 BCR chr22:23596167 5'GT 23596167 Upstream 35bp
chr5 159849845 159849845 1 + C A PRAD 159849863 + 159849843 159849883 41 GTCTGTAAAGACCAAGGGACCCCTCAAACAAAAACAGCCAA GTATGTAAAGACCAAGGGACCCCTCAAACAAAAACAGCCAA < 41bp 1 0.141210827161189 1 0.160175681114197 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTTG1 ENSG00000164611 CDS Human protein_coding chr5:159849863 chr5:159849845 nonsynonymous SNV 0.165 1 3 hm5C_associated_SNPs_31509 0 0 1 0 1 PTTG1 chr5:159849900 5'GT 159849900 Upstream 56bp
chr12 53412636 53412636 1 + A G PRAD 53412624 + 53412604 53412644 41 CGATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCA CGATGACGATGTGTATAGGGCGCCTCCAATTGGCCGTTCCA < 41bp 1 0.363390411002419 1 0.0577919185161591 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412624 chr12:53412636 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_31512 0 0 1 0 1 EIF4B chr12:53412582 3'AG 53412582 Downstream 55bp
chr12 53412636 53412636 1 + A G PRAD 53412626 + 53412606 53412646 41 ATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATC ATGACGATGTGTATAGGGCGCCTCCAATTGGCCGTTCCATC < 41bp 1 0.0455271091149186 1 0.0808804333209991 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412626 chr12:53412636 nonsynonymous SNV 1.000 5 31 hm5C_associated_SNPs_31513 0 0 1 0 1 EIF4B chr12:53412582 3'AG 53412582 Downstream 55bp
chr12 69044218 69044218 1 + C T PRAD 69044226 + 69044206 69044246 41 TGTAGAAAAATACGATCCTACGATAGAAGATTCTTATAGAA TGTAGAAAAATATGATCCTACGATAGAAGATTCTTATAGAA < 41bp 1 0.445903479380322 1 0.299214124679565 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAP1B ENSG00000127314 CDS Human protein_coding chr12:69044226 chr12:69044218 synonymous SNV . 0 13 hm5C_associated_SNPs_31514 0 0 0 0 2 RAP1B chr12:69044180 3'AG 69044180 Downstream 39bp
chr12 69044218 69044218 1 + C T PRAD 69044226 + 69044206 69044246 41 TGTAGAAAAATACGATCCTACGATAGAAGATTCTTATAGAA TGTAGAAAAATATGATCCTACGATAGAAGATTCTTATAGAA < 41bp 1 0.445903479380322 1 0.299214124679565 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAP1B ENSG00000127314 CDS Human protein_coding chr12:69044226 chr12:69044218 synonymous SNV . 0 13 hm5C_associated_SNPs_31514 0 0 0 0 2 RAP1B chr12:69044248 5'GT 69044248 Upstream 31bp
chr12 132334397 132334397 1 + C T PRAD 132334394 + 132334374 132334414 41 ATAACGTAGAGGAAGGATACCCGCGCCCCGTCTCCGACTTC ATAACGTAGAGGAAGGATACCCGTGCCCCGTCTCCGACTTC < 41bp 1 0.127874745631973 1 0.188537925481796 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MMP17 ENSG00000198598 CDS Human protein_coding chr12:132334394 chr12:132334397 nonsynonymous SNV 0.953 4 24 hm5C_associated_SNPs_31515 0 0 1 0 1 MMP17 chr12:132334347 3'AG 132334347 Downstream 51bp
chr11 581559 581559 1 + C T PRAD 581546 + 581526 581566 41 GCCTGGATGAGCTTGTGGCCCGGAGCCCAGGGCCGGATGGA GCCTGGATGAGCTTGTGGCCCGGAGCCCAGGGCTGGATGGA < 41bp 1 0.602972611905256 1 0.664305806159973 experiment 0.794054776189488 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:581546 chr11:581559 nonsynonymous SNV 0.019 2 34 hm5C_associated_SNPs_31517 0 0 1 0 3 PHRF1 chr11:581492 3'AG 581492 Downstream 68bp
chr11 581559 581559 1 + C T PRAD 581546 + 581526 581566 41 GCCTGGATGAGCTTGTGGCCCGGAGCCCAGGGCCGGATGGA GCCTGGATGAGCTTGTGGCCCGGAGCCCAGGGCTGGATGGA < 41bp 1 0.602972611905256 1 0.664305806159973 experiment 0.794054776189488 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:581546 chr11:581559 nonsynonymous SNV 0.019 2 34 hm5C_associated_SNPs_31517 0 0 1 0 3 PHRF1 chr11:581597 5'GT 581597 Upstream 39bp
chr11 581559 581559 1 + C T PRAD 581546 + 581526 581566 41 GCCTGGATGAGCTTGTGGCCCGGAGCCCAGGGCCGGATGGA GCCTGGATGAGCTTGTGGCCCGGAGCCCAGGGCTGGATGGA < 41bp 1 0.602972611905256 1 0.664305806159973 experiment 0.794054776189488 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:581546 chr11:581559 nonsynonymous SNV 0.019 2 34 hm5C_associated_SNPs_31517 0 0 1 0 3 PHRF1 chr11:581606 5'GT 581606 Upstream 48bp
chr3 52325023 52325023 1 + C T PRAD 52325038 + 52325018 52325058 41 GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG GGGTGTGGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG < 41bp 1 0.580638197645782 1 0.694418668746948 experiment 0.838723604708436 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52325038 chr3:52325023 nonsynonymous SNV 0.830 3 6 hm5C_associated_SNPs_31518 0 0 1 0 1 GLYCTK chr3:52324976 3'AG 52324976 Downstream 48bp
chr1 16046306 16046306 1 + C T PRAD 16046286 + 16046266 16046306 41 ACTACTACAAACCTCAGTACCTGCTGGACTTTGAAGACCGC ACTACTACAAACCTCAGTACCTGCTGGACTTTGAAGACCGT < 41bp 1 0.236680156251987 1 0.250664591789246 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16046286 chr1:16046306 synonymous SNV . 0 41 hm5C_associated_SNPs_31519 0 0 1 0 1 PLEKHM2 chr1:16046229 3'AG 16046229 Downstream 78bp
chr5 154174848 154174848 1 + C T PRAD 154174837 + 154174817 154174857 41 ACCCTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCAC ACCCTTATTGCTTCCTTCCACCGAGTGCAGGTCCTTACCAC < 41bp 1 0.370850626026568 1 0.773802280426025 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154174837 chr5:154174848 nonsynonymous SNV 0.999 4 32 hm5C_associated_SNPs_31520 0 0 1 0 1 LARP1 chr5:154174879 5'GT 154174879 Upstream 32bp
chr5 154174848 154174848 1 + C T PRAD 154174838 + 154174818 154174858 41 CCCTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCACT CCCTTATTGCTTCCTTCCACCGAGTGCAGGTCCTTACCACT < 41bp 1 0.334479183096067 1 0.882761001586914 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154174838 chr5:154174848 nonsynonymous SNV 0.999 4 31 hm5C_associated_SNPs_31521 0 0 1 0 1 LARP1 chr5:154174879 5'GT 154174879 Upstream 32bp
chr15 69747804 69747804 1 + C T PRAD 69747788 + 69747768 69747808 41 TGAGGAGAAGAAAGTGGAAGCAAAGAAAGAAGAATCCGAGG TGAGGAGAAGAAAGTGGAAGCAAAGAAAGAAGAATCTGAGG < 41bp 1 0.424960039642753 1 0.778047144412994 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747788 chr15:69747804 nonsynonymous SNV 0.967 0 37 hm5C_associated_SNPs_31522 0 0 1 0 1 RPLP1 chr15:69747767 3'AG 69747767 Downstream 38bp
chr15 69747804 69747804 1 + C T PRAD 69747803 + 69747783 69747823 41 GGAAGCAAAGAAAGAAGAATCCGAGGAGTCTGATGATGACA GGAAGCAAAGAAAGAAGAATCTGAGGAGTCTGATGATGACA < 41bp 1 0.592048908581764 1 0.506523072719574 experiment 0.815902182836472 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747803 chr15:69747804 nonsynonymous SNV 0.967 0 22 hm5C_associated_SNPs_31523 0 0 1 0 1 RPLP1 chr15:69747767 3'AG 69747767 Downstream 38bp
chr15 69747804 69747804 1 + C T PRAD 69747822 + 69747802 69747842 41 TCCGAGGAGTCTGATGATGACATGGGCTTTGGTCTTTTTGA TCTGAGGAGTCTGATGATGACATGGGCTTTGGTCTTTTTGA < 41bp 1 0.481320693985693 1 0.674788594245911 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747822 chr15:69747804 nonsynonymous SNV 0.967 0 3 hm5C_associated_SNPs_31524 0 0 1 0 1 RPLP1 chr15:69747767 3'AG 69747767 Downstream 38bp
chr19 36216181 36216181 1 + C T PRAD 36216189 + 36216169 36216209 41 CTCACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCT CTCACCTCTGTGTCAGGGGGCCCCCCGATGGTGTGCTTGCT < 41bp 1 0.0135129874915866 1 0.0529113113880157 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216189 chr19:36216181 nonsynonymous SNV 0.967 5 13 hm5C_associated_SNPs_31525 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 61bp
chr19 36216181 36216181 1 + C T PRAD 36216189 + 36216169 36216209 41 CTCACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCT CTCACCTCTGTGTCAGGGGGCCCCCCGATGGTGTGCTTGCT < 41bp 1 0.0135129874915866 1 0.0529113113880157 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216189 chr19:36216181 nonsynonymous SNV 0.967 5 13 hm5C_associated_SNPs_31525 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 54bp
chr19 36216181 36216181 1 + C T PRAD 36216190 + 36216170 36216210 41 TCACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTG TCACCTCTGTGTCAGGGGGCCCCCCGATGGTGTGCTTGCTG < 41bp 1 0.037980104732309 1 0.112033069133759 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216190 chr19:36216181 nonsynonymous SNV 0.967 5 12 hm5C_associated_SNPs_31526 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 61bp
chr19 36216181 36216181 1 + C T PRAD 36216190 + 36216170 36216210 41 TCACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTG TCACCTCTGTGTCAGGGGGCCCCCCGATGGTGTGCTTGCTG < 41bp 1 0.037980104732309 1 0.112033069133759 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216190 chr19:36216181 nonsynonymous SNV 0.967 5 12 hm5C_associated_SNPs_31526 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 54bp
chr19 36216181 36216181 1 + C T PRAD 36216191 + 36216171 36216211 41 CACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGT CACCTCTGTGTCAGGGGGCCCCCCGATGGTGTGCTTGCTGT < 41bp 1 0.102217445335872 1 0.171171188354492 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216191 chr19:36216181 nonsynonymous SNV 0.967 5 11 hm5C_associated_SNPs_31527 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 61bp
chr19 36216181 36216181 1 + C T PRAD 36216191 + 36216171 36216211 41 CACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGT CACCTCTGTGTCAGGGGGCCCCCCGATGGTGTGCTTGCTGT < 41bp 1 0.102217445335872 1 0.171171188354492 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216191 chr19:36216181 nonsynonymous SNV 0.967 5 11 hm5C_associated_SNPs_31527 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 54bp
chr19 36216181 36216181 1 + C T PRAD 36216192 + 36216172 36216212 41 ACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTG ACCTCTGTGTCAGGGGGCCCCCCGATGGTGTGCTTGCTGTG < 41bp 1 0.464004850159276 1 0.692130446434021 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216192 chr19:36216181 nonsynonymous SNV 0.967 5 10 hm5C_associated_SNPs_31528 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 61bp
chr19 36216181 36216181 1 + C T PRAD 36216192 + 36216172 36216212 41 ACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTG ACCTCTGTGTCAGGGGGCCCCCCGATGGTGTGCTTGCTGTG < 41bp 1 0.464004850159276 1 0.692130446434021 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216192 chr19:36216181 nonsynonymous SNV 0.967 5 10 hm5C_associated_SNPs_31528 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 54bp
chr19 36216181 36216181 1 + C T PRAD 36216193 + 36216173 36216213 41 CCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTGT CCTCTGTGTCAGGGGGCCCCCCGATGGTGTGCTTGCTGTGT < 41bp 1 0.108749084107723 1 0.31636369228363 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216193 chr19:36216181 nonsynonymous SNV 0.967 5 9 hm5C_associated_SNPs_31529 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 61bp
chr19 36216181 36216181 1 + C T PRAD 36216193 + 36216173 36216213 41 CCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTGT CCTCTGTGTCAGGGGGCCCCCCGATGGTGTGCTTGCTGTGT < 41bp 1 0.108749084107723 1 0.31636369228363 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216193 chr19:36216181 nonsynonymous SNV 0.967 5 9 hm5C_associated_SNPs_31529 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 54bp
chr19 36216181 36216181 1 + C T PRAD 36216194 + 36216174 36216214 41 CTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTGTG CTCTGTGTCAGGGGGCCCCCCGATGGTGTGCTTGCTGTGTG < 41bp 1 0.33092053818172 1 0.838261485099792 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216194 chr19:36216181 nonsynonymous SNV 0.967 5 8 hm5C_associated_SNPs_31530 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 61bp
chr19 36216181 36216181 1 + C T PRAD 36216194 + 36216174 36216214 41 CTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTGTG CTCTGTGTCAGGGGGCCCCCCGATGGTGTGCTTGCTGTGTG < 41bp 1 0.33092053818172 1 0.838261485099792 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216194 chr19:36216181 nonsynonymous SNV 0.967 5 8 hm5C_associated_SNPs_31530 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 54bp
chr5 156816239 156816239 1 + C T PRAD 156816259 + 156816239 156816279 41 CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTGAC TGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTGAC < 41bp 1 0.309611065019863 1 0.634523034095764 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816259 chr5:156816239 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_31531 0 0 0 0 1 CYFIP2 chr5:156816197 3'AG 156816197 Downstream 43bp
chr10 104140354 104140354 1 + C T PRAD 104140373 + 104140353 104140393 41 CCCTCGGCCCTCTGGGAGATCACCTGGGAACGCATTGACTG CTCTCGGCCCTCTGGGAGATCACCTGGGAACGCATTGACTG < 41bp 1 0.442665879109932 1 0.12098416686058 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104140373 chr10:104140354 nonsynonymous SNV 0.675 0 2 hm5C_associated_SNPs_31534 0 0 1 0 1 GBF1 chr10:104140263 3'AG 104140263 Downstream 92bp
chr14 24909614 24909614 1 - C T PRAD 24909627 - 24909607 24909647 41 TTCGCCTGGGCCTGGGGGGCCCCATCGGCTCAGGCCACCAA TTCGCCTGGGCCTGGGGGGCCCCATCGGCTCAGACCACCAA < 41bp 1 0.288556822322821 1 0.419655352830887 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SDR39U1 ENSG00000100445 CDS Human protein_coding chr14:24909627 chr14:24909614 nonsynonymous SNV 0.995 3 34 hm5C_associated_SNPs_31535 0 0 1 0 1 SDR39U1 chr14:24909698 3'AG 24909698 Downstream 85bp
chr9 80915565 80915565 1 + C T PRAD 80915575 + 80915555 80915595 41 AAGGAGTTGGCATTAGTGTTCTTGGTAAGATTTACTTTTGA AAGGAGTTGGTATTAGTGTTCTTGGTAAGATTTACTTTTGA < 41bp 1 0.411302445769665 1 0.524655163288116 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80915575 chr9:80915565 synonymous SNV . 0 11 hm5C_associated_SNPs_31538 0 0 1 0 2 PSAT1 chr9:80915518 3'AG 80915518 Downstream 48bp
chr9 80915565 80915565 1 + C T PRAD 80915575 + 80915555 80915595 41 AAGGAGTTGGCATTAGTGTTCTTGGTAAGATTTACTTTTGA AAGGAGTTGGTATTAGTGTTCTTGGTAAGATTTACTTTTGA < 41bp 1 0.411302445769665 1 0.524655163288116 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80915575 chr9:80915565 synonymous SNV . 0 11 hm5C_associated_SNPs_31538 0 0 1 0 2 PSAT1 chr9:80915578 5'GT 80915578 Upstream 14bp
chr19 5914990 5914990 1 + G A PRAD 5914985 + 5914965 5915005 41 GGCCCGGGAGGCTGTCATCGCAGCTGCATTTGCCAAGCTGG GGCCCGGGAGGCTGTCATCGCAGCTACATTTGCCAAGCTGG < 41bp 1 0.582075255317953 1 0.636034309864044 experiment 0.835849489364095 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CAPS ENSG00000105519 CDS Human protein_coding chr19:5914985 chr19:5914990 nonsynonymous SNV 0.807 4 26 hm5C_associated_SNPs_31539 0 0 0 0 2 CAPS chr19:5914951 3'AG 5914951 Downstream 40bp
chr19 5914990 5914990 1 + G A PRAD 5914985 + 5914965 5915005 41 GGCCCGGGAGGCTGTCATCGCAGCTGCATTTGCCAAGCTGG GGCCCGGGAGGCTGTCATCGCAGCTACATTTGCCAAGCTGG < 41bp 1 0.582075255317953 1 0.636034309864044 experiment 0.835849489364095 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CAPS ENSG00000105519 CDS Human protein_coding chr19:5914985 chr19:5914990 nonsynonymous SNV 0.807 4 26 hm5C_associated_SNPs_31539 0 0 0 0 2 CAPS chr19:5915076 5'GT 5915076 Upstream 87bp
chr16 29848061 29848061 1 + G A PRAD 29848064 + 29848044 29848084 41 CAGCCCTGCACCTCCGGGCTCGGCGGAACTTCCGGGACTTC CAGCCCTGCACCTCCGGACTCGGCGGAACTTCCGGGACTTC < 41bp 1 0.779032813838636 1 0.855805337429047 experiment 0.441934372322728 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29848064 chr16:29848061 nonsynonymous SNV 0.956 4 18 hm5C_associated_SNPs_31540 0 0 1 0 1 MVP chr16:29848043 3'AG 29848043 Downstream 19bp
chr17 73695894 73695894 1 + G A PRAD 73695888 + 73695868 73695908 41 TTTTCTGAAAGAGTTCGGAACATGTCGCCTGATGAAATCAA TTTTCTGAAAGAGTTCGGAACATGTCACCTGATGAAATCAA < 41bp 1 0.161767879476923 1 0.126861184835434 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695888 chr17:73695894 synonymous SNV . 0 27 hm5C_associated_SNPs_31541 0 0 1 0 2 SAP30BP chr17:73695863 3'AG 73695863 Downstream 32bp
chr17 73695894 73695894 1 + G A PRAD 73695888 + 73695868 73695908 41 TTTTCTGAAAGAGTTCGGAACATGTCGCCTGATGAAATCAA TTTTCTGAAAGAGTTCGGAACATGTCACCTGATGAAATCAA < 41bp 1 0.161767879476923 1 0.126861184835434 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695888 chr17:73695894 synonymous SNV . 0 27 hm5C_associated_SNPs_31541 0 0 1 0 2 SAP30BP chr17:73695951 5'GT 73695951 Upstream 58bp
chr17 73695894 73695894 1 + G A PRAD 73695893 + 73695873 73695913 41 TGAAAGAGTTCGGAACATGTCGCCTGATGAAATCAAGATCC TGAAAGAGTTCGGAACATGTCACCTGATGAAATCAAGATCC < 41bp 1 0.668918765961822 1 0.249758750200272 experiment 0.662162468076355 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695893 chr17:73695894 synonymous SNV . 0 22 hm5C_associated_SNPs_31542 0 0 1 0 2 SAP30BP chr17:73695863 3'AG 73695863 Downstream 32bp
chr17 73695894 73695894 1 + G A PRAD 73695893 + 73695873 73695913 41 TGAAAGAGTTCGGAACATGTCGCCTGATGAAATCAAGATCC TGAAAGAGTTCGGAACATGTCACCTGATGAAATCAAGATCC < 41bp 1 0.668918765961822 1 0.249758750200272 experiment 0.662162468076355 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695893 chr17:73695894 synonymous SNV . 0 22 hm5C_associated_SNPs_31542 0 0 1 0 2 SAP30BP chr17:73695951 5'GT 73695951 Upstream 58bp
chr17 73695894 73695894 1 + G A PRAD 73695896 + 73695876 73695916 41 AAGAGTTCGGAACATGTCGCCTGATGAAATCAAGATCCCGC AAGAGTTCGGAACATGTCACCTGATGAAATCAAGATCCCGC < 41bp 1 0.385042477558974 1 0.161513328552246 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695896 chr17:73695894 synonymous SNV . 0 19 hm5C_associated_SNPs_31543 0 0 1 0 2 SAP30BP chr17:73695863 3'AG 73695863 Downstream 32bp
chr17 73695894 73695894 1 + G A PRAD 73695896 + 73695876 73695916 41 AAGAGTTCGGAACATGTCGCCTGATGAAATCAAGATCCCGC AAGAGTTCGGAACATGTCACCTGATGAAATCAAGATCCCGC < 41bp 1 0.385042477558974 1 0.161513328552246 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695896 chr17:73695894 synonymous SNV . 0 19 hm5C_associated_SNPs_31543 0 0 1 0 2 SAP30BP chr17:73695951 5'GT 73695951 Upstream 58bp
chr2 219526232 219526232 1 + A G PRAD 219526252 + 219526232 219526272 41 ACTGACCGAAAGGTTTTCTTCAACATCCTGGAGGAAGGTGT GCTGACCGAAAGGTTTTCTTCAACATCCTGGAGGAAGGTGT < 41bp 1 0.792830405340689 1 0.328904688358307 experiment 0.414339189318623 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCS1L ENSG00000074582 CDS Human protein_coding chr2:219526252 chr2:219526232 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_31544 0 0 1 0 1 BCS1L chr2:219526268 5'GT 219526268 Upstream 37bp
chr9 129458221 129458221 1 + C T PRAD 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGCCCCTACGGCAGCAGTGACCCCTTCCAGCAGGG < 41bp 1 0.352589535782363 1 0.49655619263649 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458221 synonymous SNV . 0 24 hm5C_associated_SNPs_31547 0 0 0 0 2 LMX1B chr9:129458261 5'GT 129458261 Upstream 41bp
chr9 129458221 129458221 1 + C T PRAD 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGCCCCTACGGCAGCAGTGACCCCTTCCAGCAGGG < 41bp 1 0.352589535782363 1 0.49655619263649 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458221 synonymous SNV . 0 24 hm5C_associated_SNPs_31547 0 0 0 0 2 LMX1B chr9:129458282 5'GT 129458282 Upstream 62bp
chr19 18254660 18254660 1 + C T PRAD 18254659 + 18254639 18254679 41 CAGCCCATCTCTCCTGAATACCATCAGCCTGGACACAATGC CAGCCCATCTCTCCTGAATACTATCAGCCTGGACACAATGC < 41bp 1 0.0410119870595199 1 0.0230736136436462 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18254659 chr19:18254660 synonymous SNV . 0 22 hm5C_associated_SNPs_31548 0 0 1 0 1 MAST3 chr19:18254573 3'AG 18254573 Downstream 88bp
chr12 56420735 56420735 1 + C T PRAD 56420731 + 56420711 56420751 41 GAGCCTCACTCCCCTGGGGGCATCCGGCTGCCCAATGGCAA GAGCCTCACTCCCCTGGGGGCATCTGGCTGCCCAATGGCAA < 41bp 1 0.152651130695045 1 0.0486019253730774 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IKZF4 ENSG00000123411 CDS Human protein_coding chr12:56420731 chr12:56420735 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_31549 0 0 1 0 1 IKZF4 chr12:56420825 5'GT 56420825 Upstream 91bp
chr7 114655765 114655765 1 + G T PRAD 114655752 + 114655732 114655772 41 GAAAATGAAGATTGTTGTGTCCACTGTATCCTGGCTTGCTT GAAAATGAAGATTGTTGTGTCCACTGTATCCTGTCTTGCTT < 41bp 1 0.189618304118224 1 0.0642274618148804 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MDFIC ENSG00000135272 CDS Human protein_coding chr7:114655752 chr7:114655765 nonsynonymous SNV 0.987 3 34 hm5C_associated_SNPs_31550 0 0 1 0 1 MDFIC chr7:114655742 3'AG 114655742 Downstream 24bp
chr7 114655765 114655765 1 + G T PRAD 114655776 + 114655756 114655796 41 TGTATCCTGGCTTGCTTGTTCTGCGAATTCCTGACCCTTTG TGTATCCTGTCTTGCTTGTTCTGCGAATTCCTGACCCTTTG < 41bp 1 0.767527874271175 1 0.358974456787109 experiment 0.464944251457649 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MDFIC ENSG00000135272 CDS Human protein_coding chr7:114655776 chr7:114655765 nonsynonymous SNV 0.987 3 10 hm5C_associated_SNPs_31551 0 0 1 0 1 MDFIC chr7:114655742 3'AG 114655742 Downstream 24bp
chr20 60701437 60701437 1 + C T PRAD 60701448 + 60701428 60701468 41 GGCGCCCTACGGCCCGCTGGCGGCCAGCTCCCTGCTCAGCC GGCGCCCTATGGCCCGCTGGCGGCCAGCTCCCTGCTCAGCC < 41bp 1 0.683423085340313 1 0.579988420009613 experiment 0.633153829319374 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSM14B ENSG00000149657 CDS Human protein_coding chr20:60701448 chr20:60701437 synonymous SNV . 0 10 hm5C_associated_SNPs_31552 0 0 1 0 2 LSM14B chr20:60701360 3'AG 60701360 Downstream 78bp
chr20 60701437 60701437 1 + C T PRAD 60701448 + 60701428 60701468 41 GGCGCCCTACGGCCCGCTGGCGGCCAGCTCCCTGCTCAGCC GGCGCCCTATGGCCCGCTGGCGGCCAGCTCCCTGCTCAGCC < 41bp 1 0.683423085340313 1 0.579988420009613 experiment 0.633153829319374 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSM14B ENSG00000149657 CDS Human protein_coding chr20:60701448 chr20:60701437 synonymous SNV . 0 10 hm5C_associated_SNPs_31552 0 0 1 0 2 LSM14B chr20:60701495 5'GT 60701495 Upstream 59bp
chr7 142459692 142459692 1 + G A PRAD 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG AAGTCCTGGAGGGGAATGAGCAGTTCATCAATACAGCCAAG < 41bp 1 0.511835117563471 1 0.28618198633194 experiment 0.976329764873058 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459692 nonsynonymous SNV 0.019 1 33 hm5C_associated_SNPs_31553 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 68bp
chr7 142459692 142459692 1 + G A PRAD 142459685 + 142459665 142459705 41 CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT CTGGAGGGGAATGAGCAGTTCATCAATACAGCCAAGATCAT < 41bp 1 0.622217631754706 1 0.0652643144130707 experiment 0.755564736490589 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459685 chr7:142459692 nonsynonymous SNV 0.019 1 28 hm5C_associated_SNPs_31554 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 68bp
chr7 142459692 142459692 1 + G A PRAD 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAGGGGAATGAGCAGTTCATCAATACAGCCAAGATCATCCG < 41bp 1 0.749926118820924 1 0.314704895019531 experiment 0.500147762358152 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459692 nonsynonymous SNV 0.019 1 25 hm5C_associated_SNPs_31555 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 68bp
chr7 142459692 142459692 1 + G A PRAD 142459693 + 142459673 142459713 41 GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC GAATGAGCAGTTCATCAATACAGCCAAGATCATCCGCCACC < 41bp 1 0.576032078123726 1 0.0202282667160034 experiment 0.847935843752549 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459693 chr7:142459692 nonsynonymous SNV 0.019 1 20 hm5C_associated_SNPs_31556 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 68bp
chr7 142459692 142459692 1 + G A PRAD 142459696 + 142459676 142459716 41 TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC TGAGCAGTTCATCAATACAGCCAAGATCATCCGCCACCCCC < 41bp 1 0.421877436084748 1 0.248429030179977 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459696 chr7:142459692 nonsynonymous SNV 0.019 1 17 hm5C_associated_SNPs_31557 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 68bp
chr7 142459692 142459692 1 + G A PRAD 142459703 + 142459683 142459723 41 TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGA TTCATCAATACAGCCAAGATCATCCGCCACCCCCAATACGA < 41bp 1 0.290680672327805 1 0.0941267311573029 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459703 chr7:142459692 nonsynonymous SNV 0.019 1 10 hm5C_associated_SNPs_31558 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 68bp
chr7 142459692 142459692 1 + G A PRAD 142459706 + 142459686 142459726 41 ATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAG ATCAATACAGCCAAGATCATCCGCCACCCCCAATACGACAG < 41bp 1 0.321820897370325 1 0.444861710071564 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459706 chr7:142459692 nonsynonymous SNV 0.019 1 7 hm5C_associated_SNPs_31559 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 68bp
chr7 142459692 142459692 1 + G A PRAD 142459707 + 142459687 142459727 41 TCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGG TCAATACAGCCAAGATCATCCGCCACCCCCAATACGACAGG < 41bp 1 0.775310586003702 1 0.348454177379608 experiment 0.449378827992597 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459707 chr7:142459692 nonsynonymous SNV 0.019 1 6 hm5C_associated_SNPs_31560 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 68bp
chr7 142459692 142459692 1 + G A PRAD 142459709 + 142459689 142459729 41 AATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA AATACAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA < 41bp 1 0.112751813769846 1 0.0753328502178192 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459709 chr7:142459692 nonsynonymous SNV 0.019 1 4 hm5C_associated_SNPs_31561 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 68bp
chr7 142459692 142459692 1 + G A PRAD 142459710 + 142459690 142459730 41 ATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG ATACAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG < 41bp 1 0.184862500887195 1 0.137655943632126 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459710 chr7:142459692 nonsynonymous SNV 0.019 1 3 hm5C_associated_SNPs_31562 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 68bp
chr7 142459692 142459692 1 + G A PRAD 142459712 + 142459692 142459732 41 GCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC ACAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC < 41bp 1 0.146548582195884 1 0.0738962590694427 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459712 chr7:142459692 nonsynonymous SNV 0.019 1 1 hm5C_associated_SNPs_31563 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 68bp
chr19 54969700 54969700 1 + C T PRAD 54969680 + 54969660 54969700 41 GATCGGGAGCGCAAGGTCGCCCTCAAGGCCATGATCAAAAC GATCGGGAGCGCAAGGTCGCCCTCAAGGCCATGATCAAAAT < 41bp 1 0.111995207928267 1 0.200193285942078 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54969680 chr19:54969700 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_31564 0 0 1 0 1 LENG8 chr19:54969700 5'GT 54969700 Upstream 1bp
chr3 38022319 38022319 1 + C T PRAD 38022310 + 38022290 38022330 41 CCCTTCTTTGAGGGCCTGAGCCGGGAGGACGACGTGTACAG CCCTTCTTTGAGGGCCTGAGCCGGGAGGATGACGTGTACAG < 41bp 1 0.716944377131799 1 0.646317183971405 experiment 0.566111245736402 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CTDSPL ENSG00000144677 CDS Human protein_coding chr3:38022310 chr3:38022319 synonymous SNV . 0 30 hm5C_associated_SNPs_31565 0 0 1 0 1 CTDSPL chr3:38022233 3'AG 38022233 Downstream 87bp
chr7 157041158 157041158 1 + G A PRAD 157041160 + 157041140 157041180 41 GTGGACATTCACCACCTCGCCTCCCTAGACCCTGAGGTGTA GTGGACATTCACCACCTCACCTCCCTAGACCCTGAGGTGTA < 41bp 1 0.395594131238139 1 0.559426188468933 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE3C ENSG00000009335 CDS Human protein_coding chr7:157041160 chr7:157041158 nonsynonymous SNV 0.351 3 19 hm5C_associated_SNPs_31566 0 0 1 0 1 UBE3C chr7:157041062 3'AG 157041062 Downstream 97bp
chr1 240492719 240492719 1 + G T PRAD 240492713 + 240492693 240492733 41 CCTGTTCCAGTCCACATTTTCAGAAAGCATTTGCTCAATTC CCTGTTCCAGTCCACATTTTCAGAAATCATTTGCTCAATTC < 41bp 1 0.57848329401557 1 0.711894035339355 experiment 0.84303341196886 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FMN2 ENSG00000155816 CDS Human protein_coding chr1:240492713 chr1:240492719 nonsynonymous SNV 0.985 4 27 hm5C_associated_SNPs_31568 0 0 0 0 2 FMN2 chr1:240492639 3'AG 240492639 Downstream 81bp
chr1 240492719 240492719 1 + G T PRAD 240492713 + 240492693 240492733 41 CCTGTTCCAGTCCACATTTTCAGAAAGCATTTGCTCAATTC CCTGTTCCAGTCCACATTTTCAGAAATCATTTGCTCAATTC < 41bp 1 0.57848329401557 1 0.711894035339355 experiment 0.84303341196886 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FMN2 ENSG00000155816 CDS Human protein_coding chr1:240492713 chr1:240492719 nonsynonymous SNV 0.985 4 27 hm5C_associated_SNPs_31568 0 0 0 0 2 FMN2 chr1:240492768 5'GT 240492768 Upstream 50bp
chr7 150704213 150704213 1 + C T PRAD 150704202 + 150704182 150704222 41 CACCCCAGGTTCTGTGTGTTCGGGCTCGGCTCCCGGGCATA CACCCCAGGTTCTGTGTGTTCGGGCTCGGCTTCCGGGCATA < 41bp 1 0.795263375669197 1 0.912142395973206 experiment 0.409473248661605 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control NOS3 ENSG00000164867 CDS Human protein_coding chr7:150704202 chr7:150704213 nonsynonymous SNV 0.983 4 32 hm5C_associated_SNPs_31569 0 0 0 0 1 NOS3 chr7:150704190 3'AG 150704190 Downstream 24bp
chr11 44092838 44092838 1 + A G PRAD 44092826 + 44092806 44092846 41 GGCATCATTAACTTGGGCACCAGTGAGAACAAACTCTGCTT GGCATCATTAACTTGGGCACCAGTGAGAACAAGCTCTGCTT < 41bp 1 0.382871832759532 1 0.497069954872131 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACCS ENSG00000110455 CDS Human protein_coding chr11:44092826 chr11:44092838 synonymous SNV . 0 33 hm5C_associated_SNPs_31570 0 0 1 0 2 ACCS chr11:44092806 3'AG 44092806 Downstream 33bp
chr11 44092838 44092838 1 + A G PRAD 44092826 + 44092806 44092846 41 GGCATCATTAACTTGGGCACCAGTGAGAACAAACTCTGCTT GGCATCATTAACTTGGGCACCAGTGAGAACAAGCTCTGCTT < 41bp 1 0.382871832759532 1 0.497069954872131 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACCS ENSG00000110455 CDS Human protein_coding chr11:44092826 chr11:44092838 synonymous SNV . 0 33 hm5C_associated_SNPs_31570 0 0 1 0 2 ACCS chr11:44092865 5'GT 44092865 Upstream 28bp
chr1 36028872 36028872 1 + G T PRAD 36028874 + 36028854 36028894 41 GATCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAGT GATCCTGATCAAGGAAGGTGCCCCCTCGCTTCTGTGCAAGT < 41bp 1 0.071213300989679 1 0.095507025718689 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028874 chr1:36028872 synonymous SNV . 0 19 hm5C_associated_SNPs_31571 0 0 1 0 1 NCDN chr1:36028803 3'AG 36028803 Downstream 70bp
chr1 36028872 36028872 1 + G T PRAD 36028876 + 36028856 36028896 41 TCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAGTAT TCCTGATCAAGGAAGGTGCCCCCTCGCTTCTGTGCAAGTAT < 41bp 1 0.0351310587386012 1 0.0712760388851166 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028876 chr1:36028872 synonymous SNV . 0 17 hm5C_associated_SNPs_31572 0 0 1 0 1 NCDN chr1:36028803 3'AG 36028803 Downstream 70bp
chr5 147796680 147796680 1 + A C PRAD 147796689 + 147796669 147796709 41 ACATCCACGACAACAATCACCATCATCCAGATGACTCAGAC ACATCCACGACCACAATCACCATCATCCAGATGACTCAGAC < 41bp 1 0.505709790841905 1 0.0608231723308563 experiment 0.988580418316189 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147796689 chr5:147796680 nonsynonymous SNV 0.999 1 12 hm5C_associated_SNPs_31573 0 0 1 0 1 FBXO38 chr5:147796767 5'GT 147796767 Upstream 88bp
chr19 45494556 45494556 1 + A G PRAD 45494552 + 45494532 45494572 41 CTCCTGGGCTGCTATGCCGTCTACAGTCTTCTGTACCTGGA CTCCTGGGCTGCTATGCCGTCTACGGTCTTCTGTACCTGGA < 41bp 1 0.65799533645285 1 0.394010186195374 experiment 0.6840093270943 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45494552 chr19:45494556 nonsynonymous SNV 0.986 4 25 hm5C_associated_SNPs_31574 0 0 1 0 2 CLPTM1 chr19:45494496 3'AG 45494496 Downstream 61bp
chr19 45494556 45494556 1 + A G PRAD 45494552 + 45494532 45494572 41 CTCCTGGGCTGCTATGCCGTCTACAGTCTTCTGTACCTGGA CTCCTGGGCTGCTATGCCGTCTACGGTCTTCTGTACCTGGA < 41bp 1 0.65799533645285 1 0.394010186195374 experiment 0.6840093270943 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45494552 chr19:45494556 nonsynonymous SNV 0.986 4 25 hm5C_associated_SNPs_31574 0 0 1 0 2 CLPTM1 chr19:45494631 5'GT 45494631 Upstream 76bp
chr5 34925038 34925038 1 + A G PRAD 34925039 + 34925019 34925059 41 TCCAGGGAAGTTTTGGAGGACCAACTTTATATGAAAATCCT TCCAGGGAAGTTTTGGAGGGCCAACTTTATATGAAAATCCT < 41bp 1 0.0768009746157267 1 0.111791163682938 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BRIX1 ENSG00000113460 CDS Human protein_coding chr5:34925039 chr5:34925038 synonymous SNV . 0 20 hm5C_associated_SNPs_31576 0 0 1 0 2 BRIX1 chr5:34924952 3'AG 34924952 Downstream 87bp
chr5 34925038 34925038 1 + A G PRAD 34925039 + 34925019 34925059 41 TCCAGGGAAGTTTTGGAGGACCAACTTTATATGAAAATCCT TCCAGGGAAGTTTTGGAGGGCCAACTTTATATGAAAATCCT < 41bp 1 0.0768009746157267 1 0.111791163682938 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BRIX1 ENSG00000113460 CDS Human protein_coding chr5:34925039 chr5:34925038 synonymous SNV . 0 20 hm5C_associated_SNPs_31576 0 0 1 0 2 BRIX1 chr5:34925080 5'GT 34925080 Upstream 43bp
chr5 34925038 34925038 1 + A G PRAD 34925040 + 34925020 34925060 41 CCAGGGAAGTTTTGGAGGACCAACTTTATATGAAAATCCTC CCAGGGAAGTTTTGGAGGGCCAACTTTATATGAAAATCCTC < 41bp 1 0.362742886749377 1 0.135796725749969 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BRIX1 ENSG00000113460 CDS Human protein_coding chr5:34925040 chr5:34925038 synonymous SNV . 0 19 hm5C_associated_SNPs_31577 0 0 1 0 2 BRIX1 chr5:34924952 3'AG 34924952 Downstream 87bp
chr5 34925038 34925038 1 + A G PRAD 34925040 + 34925020 34925060 41 CCAGGGAAGTTTTGGAGGACCAACTTTATATGAAAATCCTC CCAGGGAAGTTTTGGAGGGCCAACTTTATATGAAAATCCTC < 41bp 1 0.362742886749377 1 0.135796725749969 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BRIX1 ENSG00000113460 CDS Human protein_coding chr5:34925040 chr5:34925038 synonymous SNV . 0 19 hm5C_associated_SNPs_31577 0 0 1 0 2 BRIX1 chr5:34925080 5'GT 34925080 Upstream 43bp
chr7 100861489 100861489 1 + A G PRAD 100861474 + 100861454 100861494 41 CTTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACT CTTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGGAAACT < 41bp 1 0.107983004516651 1 0.122425854206085 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100861474 chr7:100861489 nonsynonymous SNV 0.999 1 36 hm5C_associated_SNPs_31579 0 0 1 0 1 ZNHIT1 chr7:100861498 5'GT 100861498 Upstream 10bp
chr7 100861489 100861489 1 + A G PRAD 100861475 + 100861455 100861495 41 TTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACTT TTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGGAAACTT < 41bp 1 0.460477901986726 1 0.507867455482483 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100861475 chr7:100861489 nonsynonymous SNV 0.999 1 35 hm5C_associated_SNPs_31580 0 0 1 0 1 ZNHIT1 chr7:100861498 5'GT 100861498 Upstream 10bp
chr16 2011248 2011248 1 + C G PRAD 2011268 + 2011248 2011288 41 CATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGG GATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGG < 41bp 1 0.651293777200329 1 0.476713448762894 experiment 0.697412445599342 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011268 chr16:2011248 nonsynonymous SNV 0.000 4 1 hm5C_associated_SNPs_31581 0 0 1 0 2 NDUFB10 chr16:2011154 3'AG 2011154 Downstream 95bp
chr16 2011248 2011248 1 + C G PRAD 2011268 + 2011248 2011288 41 CATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGG GATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGG < 41bp 1 0.651293777200329 1 0.476713448762894 experiment 0.697412445599342 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011268 chr16:2011248 nonsynonymous SNV 0.000 4 1 hm5C_associated_SNPs_31581 0 0 1 0 2 NDUFB10 chr16:2011292 5'GT 2011292 Upstream 45bp
chr1 17949669 17949669 1 + C T PRAD 17949656 + 17949636 17949676 41 CCACCGAGAAGATCGGGGACCTCTTCGTGGCCTCGGTAAGT CCACCGAGAAGATCGGGGACCTCTTCGTGGCCTTGGTAAGT < 41bp 1 0.125170261550767 1 0.0229838192462921 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF10L ENSG00000074964 CDS Human protein_coding chr1:17949656 chr1:17949669 nonsynonymous SNV 0.921 4 34 hm5C_associated_SNPs_31582 0 0 1 0 1 ARHGEF10L chr1:17949670 5'GT 17949670 Upstream 2bp
chr19 1434835 1434835 1 + G C PRAD 1434836 + 1434816 1434856 41 TCCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGG TCCGTGCCAGGGTCGGGGGCCCCCCCCGCCGGCGGCAGCGG < 41bp 1 0.325989656308938 1 0.191432923078537 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434836 chr19:1434835 nonsynonymous SNV 0.982 1 20 hm5C_associated_SNPs_31585 0 0 1 0 1 DAZAP1 chr19:1434736 3'AG 1434736 Downstream 100bp
chr19 1434835 1434835 1 + G C PRAD 1434837 + 1434817 1434857 41 CCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGC CCGTGCCAGGGTCGGGGGCCCCCCCCGCCGGCGGCAGCGGC < 41bp 1 0.425315274709722 1 0.150769174098969 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434837 chr19:1434835 nonsynonymous SNV 0.982 1 19 hm5C_associated_SNPs_31586 0 0 1 0 1 DAZAP1 chr19:1434736 3'AG 1434736 Downstream 100bp
chr19 1434835 1434835 1 + G C PRAD 1434838 + 1434818 1434858 41 CGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCT CGTGCCAGGGTCGGGGGCCCCCCCCGCCGGCGGCAGCGGCT < 41bp 1 0.502281230280361 1 0.402179539203644 experiment 0.995437539439279 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434838 chr19:1434835 nonsynonymous SNV 0.982 1 18 hm5C_associated_SNPs_31587 0 0 1 0 1 DAZAP1 chr19:1434736 3'AG 1434736 Downstream 100bp
chr19 1434835 1434835 1 + G C PRAD 1434839 + 1434819 1434859 41 GTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCTT GTGCCAGGGTCGGGGGCCCCCCCCGCCGGCGGCAGCGGCTT < 41bp 1 0.758674561875139 1 0.191567361354828 experiment 0.482650876249721 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434839 chr19:1434835 nonsynonymous SNV 0.982 1 17 hm5C_associated_SNPs_31588 0 0 1 0 1 DAZAP1 chr19:1434736 3'AG 1434736 Downstream 100bp
chr11 71209471 71209471 1 + C T PRAD 71209490 + 71209470 71209510 41 GCGTACCACGCCGAGAACTACAGCCCTGAGGACAACAGGTT GTGTACCACGCCGAGAACTACAGCCCTGAGGACAACAGGTT < 41bp 1 0.182147535377473 1 0.323517173528671 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71209490 chr11:71209471 nonsynonymous SNV 0.050 2 2 hm5C_associated_SNPs_31590 0 0 1 0 1 NADSYN1 chr11:71209398 3'AG 71209398 Downstream 74bp
chr18 48604690 48604690 1 + T A PRAD 48604710 + 48604690 48604730 41 TTTTGTGAAAGGCTGGGGACCGGATTACCCAAGACAGAGCA ATTTGTGAAAGGCTGGGGACCGGATTACCCAAGACAGAGCA < 41bp 1 0.477961404653768 1 0.709270358085632 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48604710 chr18:48604690 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_31593 0 0 1 0 1 SMAD4 chr18:48604626 3'AG 48604626 Downstream 65bp
chr12 49888746 49888746 1 + G T PRAD 49888749 + 49888729 49888769 41 ATGCCAGAGAATTGGAGGATCCCGAGTCTGCCATGCTAGAT ATGCCAGAGAATTGGAGTATCCCGAGTCTGCCATGCTAGAT < 41bp 1 0.783526912668483 1 0.375622570514679 experiment 0.432946174663035 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SPATS2 ENSG00000123352 CDS Human protein_coding chr12:49888749 chr12:49888746 nonsynonymous SNV 0.820 4 18 hm5C_associated_SNPs_31594 0 0 1 0 1 SPATS2 chr12:49888785 5'GT 49888785 Upstream 40bp
chr15 57565238 57565238 1 + G A PRAD 57565228 + 57565208 57565248 41 GTTGTTACTTTATTTTCTAGCAGTACTAATGAAGATGAGGA GTTGTTACTTTATTTTCTAGCAGTACTAATAAAGATGAGGA < 41bp 1 0.215036811530664 1 0.209349751472473 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57565228 chr15:57565238 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_31595 0 0 1 0 2 TCF12 chr15:57565228 3'AG 57565228 Downstream 11bp
chr15 57565238 57565238 1 + G A PRAD 57565228 + 57565208 57565248 41 GTTGTTACTTTATTTTCTAGCAGTACTAATGAAGATGAGGA GTTGTTACTTTATTTTCTAGCAGTACTAATAAAGATGAGGA < 41bp 1 0.215036811530664 1 0.209349751472473 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57565228 chr15:57565238 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_31595 0 0 1 0 2 TCF12 chr15:57565231 3'AG 57565231 Downstream 8bp
chr1 25679432 25679432 1 + A G PRAD 25679441 + 25679421 25679461 41 TGATTGCATCTATGTGGATTCTTTTTGGAGGTTATGTTGCT TGATTGCATCTGTGTGGATTCTTTTTGGAGGTTATGTTGCT < 41bp 1 0.118398199951695 1 0.0334527492523193 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25679441 chr1:25679432 nonsynonymous SNV 0.999 1 12 hm5C_associated_SNPs_31596 0 0 1 2 2 TMEM50A chr1:25679373 3'AG 25679373 Downstream 60bp
chr1 25679432 25679432 1 + A G PRAD 25679441 + 25679421 25679461 41 TGATTGCATCTATGTGGATTCTTTTTGGAGGTTATGTTGCT TGATTGCATCTGTGTGGATTCTTTTTGGAGGTTATGTTGCT < 41bp 1 0.118398199951695 1 0.0334527492523193 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25679441 chr1:25679432 nonsynonymous SNV 0.999 1 12 hm5C_associated_SNPs_31596 0 0 1 2 2 TMEM50A chr1:25679465 5'GT 25679465 Upstream 34bp
chr1 203819752 203819752 1 + G A PRAD 203819733 + 203819713 203819753 41 TAAGGCAGTGGAGATGCACGCTGCTGTCATTGCCGCTGTGA TAAGGCAGTGGAGATGCACGCTGCTGTCATTGCCGCTGTAA < 41bp 1 0.723670541355944 1 0.294281870126724 experiment 0.552658917288111 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203819733 chr1:203819752 synonymous SNV . 0 40 hm5C_associated_SNPs_31598 0 0 1 0 1 ZC3H11A chr1:203819809 5'GT 203819809 Upstream 58bp
chr17 49239114 49239114 1 + G A PRAD 49239099 + 49239079 49239119 41 CTCCACCCAGGAACATTATACATGGCAGTGATTCTGTGGAG CTCCACCCAGGAACATTATACATGGCAGTGATTCTATGGAG < 41bp 1 0.409174602165703 1 0.10829570889473 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NME1 ENSG00000239672 CDS Human protein_coding chr17:49239099 chr17:49239114 nonsynonymous SNV 0.994 1 36 hm5C_associated_SNPs_31599 0 0 1 0 1 NME1 chr17:49239089 3'AG 49239089 Downstream 26bp
chr17 49239114 49239114 1 + G A PRAD 49239112 + 49239092 49239132 41 CATTATACATGGCAGTGATTCTGTGGAGAGTGCAGAGAAGG CATTATACATGGCAGTGATTCTATGGAGAGTGCAGAGAAGG < 41bp 1 0.31651587645818 1 0.648480474948883 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NME1 ENSG00000239672 CDS Human protein_coding chr17:49239112 chr17:49239114 nonsynonymous SNV 0.994 1 23 hm5C_associated_SNPs_31600 0 0 1 0 1 NME1 chr17:49239089 3'AG 49239089 Downstream 26bp
chr17 49239114 49239114 1 + G A PRAD 49239124 + 49239104 49239144 41 CAGTGATTCTGTGGAGAGTGCAGAGAAGGAGATCGGCTTGT CAGTGATTCTATGGAGAGTGCAGAGAAGGAGATCGGCTTGT < 41bp 1 0.430855354941756 1 0.383130490779877 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NME1 ENSG00000239672 CDS Human protein_coding chr17:49239124 chr17:49239114 nonsynonymous SNV 0.994 1 11 hm5C_associated_SNPs_31601 0 0 1 0 1 NME1 chr17:49239089 3'AG 49239089 Downstream 26bp
chr1 114450813 114450813 1 + G A PRAD 114450803 + 114450783 114450823 41 CGAAAACACCCACAACATAACATAAAGATTGGTGAGTTGTT CGAAAACACCCACAACATAACATAAAGATTAGTGAGTTGTT < 41bp 1 0.35154468354318 1 0.101184576749802 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCLRE1B ENSG00000118655 CDS Human protein_coding chr1:114450803 chr1:114450813 nonsynonymous SNV 0.992 4 31 hm5C_associated_SNPs_31602 0 0 0 0 1 DCLRE1B chr1:114450813 5'GT 114450813 Upstream 1bp
chr12 62688039 62688039 1 + G A PRAD 62688042 + 62688022 62688062 41 ACAAATACCAGATGGGAGATCAAAATGTGTATCCTGGACCC ACAAATACCAGATGGGAAATCAAAATGTGTATCCTGGACCC < 41bp 1 0.777010050860989 1 0.734219133853912 experiment 0.445979898278022 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control USP15 ENSG00000135655 CDS Human protein_coding chr12:62688042 chr12:62688039 nonsynonymous SNV 1.000 0 18 hm5C_associated_SNPs_31603 0 0 1 0 2 USP15 chr12:62687960 3'AG 62687960 Downstream 80bp
chr12 62688039 62688039 1 + G A PRAD 62688042 + 62688022 62688062 41 ACAAATACCAGATGGGAGATCAAAATGTGTATCCTGGACCC ACAAATACCAGATGGGAAATCAAAATGTGTATCCTGGACCC < 41bp 1 0.777010050860989 1 0.734219133853912 experiment 0.445979898278022 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control USP15 ENSG00000135655 CDS Human protein_coding chr12:62688042 chr12:62688039 nonsynonymous SNV 1.000 0 18 hm5C_associated_SNPs_31603 0 0 1 0 2 USP15 chr12:62688087 5'GT 62688087 Upstream 49bp
chr17 43311099 43311099 1 + G A PRAD 43311084 + 43311064 43311104 41 CTCGAGTACCTGGCCTTTGCCCAGTGCTCTGTCACGTAAGC CTCGAGTACCTGGCCTTTGCCCAGTGCTCTGTCACATAAGC < 41bp 1 0.247955884489114 1 0.39880558848381 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FMNL1 ENSG00000184922 splicing Human protein_coding chr17:43311084 chr17:43311099 . 0.919 0 36 hm5C_associated_SNPs_31604 0 0 1 0 1 FMNL1 chr17:43311015 3'AG 43311015 Downstream 85bp
chr7 70252229 70252229 1 + C A PRAD 70252228 + 70252208 70252248 41 GTTCGGCCACAAGGATGGCCCCAGTGTGCAGAACTTTAGCA GTTCGGCCACAAGGATGGCCCAAGTGTGCAGAACTTTAGCA < 41bp 1 0.275464930126613 1 0.284631431102753 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:70252228 chr7:70252229 synonymous SNV . 0 22 hm5C_associated_SNPs_31607 0 0 1 0 1 AUTS2 chr7:70252195 3'AG 70252195 Downstream 35bp
chr11 68822730 68822730 1 + C A PRAD 68822727 + 68822707 68822747 41 ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCCCTGGGA ACCAGCACGGCGGACGTGCGCTAACGCGCTGCTCCCTGGGA < 41bp 1 0.38432590873825 1 0.0987248122692108 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68822727 chr11:68822730 stopgain 0.070 0 24 hm5C_associated_SNPs_31608 0 0 0 0 2 TPCN2 chr11:68822643 3'AG 68822643 Downstream 88bp
chr11 68822730 68822730 1 + C A PRAD 68822727 + 68822707 68822747 41 ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCCCTGGGA ACCAGCACGGCGGACGTGCGCTAACGCGCTGCTCCCTGGGA < 41bp 1 0.38432590873825 1 0.0987248122692108 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68822727 chr11:68822730 stopgain 0.070 0 24 hm5C_associated_SNPs_31608 0 0 0 0 2 TPCN2 chr11:68822820 5'GT 68822820 Upstream 91bp
chr19 10812880 10812880 1 + A G PRAD 10812865 + 10812845 10812885 41 GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAATGAGA GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAGTGAGA < 41bp 1 0.203423366598749 1 0.0628441274166107 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10812865 chr19:10812880 nonsynonymous SNV 0.344 0 36 hm5C_associated_SNPs_31610 0 0 1 0 2 QTRT1 chr19:10812792 3'AG 10812792 Downstream 89bp
chr19 10812880 10812880 1 + A G PRAD 10812865 + 10812845 10812885 41 GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAATGAGA GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAGTGAGA < 41bp 1 0.203423366598749 1 0.0628441274166107 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10812865 chr19:10812880 nonsynonymous SNV 0.344 0 36 hm5C_associated_SNPs_31610 0 0 1 0 2 QTRT1 chr19:10812930 5'GT 10812930 Upstream 51bp
chr19 10897283 10897283 1 + G A PRAD 10897279 + 10897259 10897299 41 GGGAGTCGCTGCCGGCCCTACGTAGCAAACTACAGAGCCAG GGGAGTCGCTGCCGGCCCTACGTAACAAACTACAGAGCCAG < 41bp 1 0.282248753483155 1 0.200149118900299 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10897279 chr19:10897283 nonsynonymous SNV 0.924 1 25 hm5C_associated_SNPs_31613 0 0 1 0 2 DNM2 chr19:10897240 3'AG 10897240 Downstream 44bp
chr19 10897283 10897283 1 + G A PRAD 10897279 + 10897259 10897299 41 GGGAGTCGCTGCCGGCCCTACGTAGCAAACTACAGAGCCAG GGGAGTCGCTGCCGGCCCTACGTAACAAACTACAGAGCCAG < 41bp 1 0.282248753483155 1 0.200149118900299 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10897279 chr19:10897283 nonsynonymous SNV 0.924 1 25 hm5C_associated_SNPs_31613 0 0 1 0 2 DNM2 chr19:10897382 5'GT 10897382 Upstream 100bp
chr3 47361170 47361170 1 + C T PRAD 47361152 + 47361132 47361172 41 TTTGCCCACAGATTGGGGACCACAAATTCAGTGCCCACCGG TTTGCCCACAGATTGGGGACCACAAATTCAGTGCCCACTGG < 41bp 1 0.491815404006302 1 0.198470503091812 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47361152 chr3:47361170 nonsynonymous SNV 0.999 4 39 hm5C_associated_SNPs_31614 0 0 1 0 1 KLHL18 chr3:47361143 3'AG 47361143 Downstream 28bp
chr5 145641086 145641086 1 + G T PRAD 145641091 + 145641071 145641111 41 AGGTTGCTTTTAAGGGTGACCCAGAAGCAGCCCTAATCCAA AGGTTGCTTTTAAGGTTGACCCAGAAGCAGCCCTAATCCAA < 41bp 1 0.399296491742642 1 0.403691381216049 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM27 ENSG00000091009 CDS Human protein_coding chr5:145641091 chr5:145641086 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_31615 0 0 1 0 1 RBM27 chr5:145641073 3'AG 145641073 Downstream 14bp
chr13 113729393 113729393 1 + C T PRAD 113729386 + 113729366 113729406 41 AACAAGCACTACGCGGTAGACTCCATCCGCCCAAAGTGCCA AACAAGCACTACGCGGTAGACTCCATCTGCCCAAAGTGCCA < 41bp 1 0.673765202102781 1 0.906654357910156 experiment 0.652469595794439 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113729386 chr13:113729393 nonsynonymous SNV 0.567 2 28 hm5C_associated_SNPs_31618 0 0 1 0 1 MCF2L chr13:113729312 3'AG 113729312 Downstream 82bp
chr19 41510021 41510021 1 + C A PRAD 41510016 + 41509996 41510036 41 CTTGTGGACAAGGCTGAGGCCTTCTCTGGCCGGGGAAAAAT CTTGTGGACAAGGCTGAGGCCTTCTATGGCCGGGGAAAAAT < 41bp 1 0.237137217181158 1 0.182062566280365 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41510016 chr19:41510021 nonsynonymous SNV 0.786 3 26 hm5C_associated_SNPs_31620 0 0 0 0 1 CYP2B6 chr19:41510068 5'GT 41510068 Upstream 48bp
chr2 109365426 109365426 1 + A G PRAD 109365446 + 109365426 109365466 41 ATTGTTGAAACTTTTGCCAACAAAAGCGGGCAGTCTGCATT GTTGTTGAAACTTTTGCCAACAAAAGCGGGCAGTCTGCATT < 41bp 1 0.368457219804649 1 0.139296352863312 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109365446 chr2:109365426 nonsynonymous SNV 0.877 0 1 hm5C_associated_SNPs_31621 0 0 1 0 1 RANBP2 chr2:109365376 3'AG 109365376 Downstream 51bp
chr11 71946489 71946489 1 + C T PRAD 71946476 + 71946456 71946496 41 GTGCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGG GTGCCCACGGAGCGCCTGGGCACCCGTGAGCGGTTCTACGG < 41bp 1 0.392425490728133 1 0.0531098544597626 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946476 chr11:71946489 nonsynonymous SNV 0.997 3 34 hm5C_associated_SNPs_31622 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 7bp
chr11 71946489 71946489 1 + C T PRAD 71946478 + 71946458 71946498 41 GCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTG GCCCACGGAGCGCCTGGGCACCCGTGAGCGGTTCTACGGTG < 41bp 1 0.389750943605497 1 0.0867576003074646 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946478 chr11:71946489 nonsynonymous SNV 0.997 3 32 hm5C_associated_SNPs_31623 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 7bp
chr11 71946489 71946489 1 + C T PRAD 71946479 + 71946459 71946499 41 CCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTGG CCCACGGAGCGCCTGGGCACCCGTGAGCGGTTCTACGGTGG < 41bp 1 0.159306661126104 1 0.452099949121475 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946479 chr11:71946489 nonsynonymous SNV 0.997 3 31 hm5C_associated_SNPs_31624 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 7bp
chr11 71946489 71946489 1 + C T PRAD 71946480 + 71946460 71946500 41 CCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTGGG CCACGGAGCGCCTGGGCACCCGTGAGCGGTTCTACGGTGGG < 41bp 1 0.713432884285237 1 0.521391451358795 experiment 0.573134231429526 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946480 chr11:71946489 nonsynonymous SNV 0.997 3 30 hm5C_associated_SNPs_31625 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 7bp
chr3 23960791 23960791 1 + C T PRAD 23960787 + 23960767 23960807 41 TGAGGTTATCCTCATTGATCCATTCCATAAAGCTATCAGAA TGAGGTTATCCTCATTGATCCATTTCATAAAGCTATCAGAA < 41bp 1 0.0230550495382297 1 0.0483014583587646 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 CDS Human protein_coding chr3:23960787 chr3:23960791 synonymous SNV . 0 25 hm5C_associated_SNPs_31626 0 0 0 0 1 RPL15 chr3:23960719 3'AG 23960719 Downstream 73bp
chr1 113238156 113238156 1 + C T PRAD 113238138 + 113238118 113238158 41 CCGGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGCCC CCGGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGTCC < 41bp 1 0.0461662823291348 1 0.0597780644893646 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113238138 chr1:113238156 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_31627 0 0 1 0 1 MOV10 chr1:113238196 5'GT 113238196 Upstream 41bp
chr1 113238156 113238156 1 + C T PRAD 113238149 + 113238129 113238169 41 TTCCTAGCTCCATCTACCGCCTCCTGGCCCCCAGCAGGGAC TTCCTAGCTCCATCTACCGCCTCCTGGTCCCCAGCAGGGAC < 41bp 1 0.283665983335751 1 0.190623611211777 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113238149 chr1:113238156 nonsynonymous SNV 1.000 5 28 hm5C_associated_SNPs_31628 0 0 1 0 1 MOV10 chr1:113238196 5'GT 113238196 Upstream 41bp
chr16 31122508 31122508 1 + C T PRAD 31122511 + 31122491 31122531 41 CCTATGCCACTGGACTACATCCTGCCGGAGCTGCTCAAGAA CCTATGCCACTGGACTATATCCTGCCGGAGCTGCTCAAGAA < 41bp 1 0.196627495566618 1 0.226367205381393 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BCKDK ENSG00000103507 CDS Human protein_coding chr16:31122511 chr16:31122508 synonymous SNV . 0 18 hm5C_associated_SNPs_31629 0 0 1 0 2 BCKDK chr16:31122412 3'AG 31122412 Downstream 97bp
chr16 31122508 31122508 1 + C T PRAD 31122511 + 31122491 31122531 41 CCTATGCCACTGGACTACATCCTGCCGGAGCTGCTCAAGAA CCTATGCCACTGGACTATATCCTGCCGGAGCTGCTCAAGAA < 41bp 1 0.196627495566618 1 0.226367205381393 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BCKDK ENSG00000103507 CDS Human protein_coding chr16:31122511 chr16:31122508 synonymous SNV . 0 18 hm5C_associated_SNPs_31629 0 0 1 0 2 BCKDK chr16:31122540 5'GT 31122540 Upstream 33bp
chr17 7160288 7160288 1 + G A PRAD 7160303 + 7160283 7160323 41 ACCCTGGGCGGTACCATGGGCCAGGCCTCGGCCCACATCCT ACCCTAGGCGGTACCATGGGCCAGGCCTCGGCCCACATCCT < 41bp 1 0.452346413635655 1 0.290283381938934 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160303 chr17:7160288 synonymous SNV . 0 6 hm5C_associated_SNPs_31630 0 0 1 0 1 ELP5 chr17:7160357 5'GT 7160357 Upstream 70bp
chr17 7160288 7160288 1 + G A PRAD 7160304 + 7160284 7160324 41 CCCTGGGCGGTACCATGGGCCAGGCCTCGGCCCACATCCTG CCCTAGGCGGTACCATGGGCCAGGCCTCGGCCCACATCCTG < 41bp 1 0.701748316712772 1 0.804893374443054 experiment 0.596503366574456 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160304 chr17:7160288 synonymous SNV . 0 5 hm5C_associated_SNPs_31631 0 0 1 0 1 ELP5 chr17:7160357 5'GT 7160357 Upstream 70bp
chr9 33313653 33313653 1 + C T PRAD 33313662 + 33313642 33313682 41 GTCTTTACAGGCACACAGTTCGCTGTGGTCAGGCTGTCTCA GTCTTTACAGGTACACAGTTCGCTGTGGTCAGGCTGTCTCA < 41bp 1 0.379949489798871 1 0.275588244199753 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33313662 chr9:33313653 nonsynonymous SNV 0.984 4 12 hm5C_associated_SNPs_31632 0 0 1 0 1 NFX1 chr9:33313652 3'AG 33313652 Downstream 2bp
chr2 220350132 220350132 1 + A G PRAD 220350113 + 220350093 220350133 41 CCGCTGGGGCTTCTCTCGGCCGCGGAAGGACAAGGGGTTAT CCGCTGGGGCTTCTCTCGGCCGCGGAAGGACAAGGGGTTGT < 41bp 1 0.434337601182353 1 0.62467086315155 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220350113 chr2:220350132 synonymous SNV . 0 40 hm5C_associated_SNPs_31634 0 0 0 0 2 SPEG chr2:220350068 3'AG 220350068 Downstream 65bp
chr2 220350132 220350132 1 + A G PRAD 220350113 + 220350093 220350133 41 CCGCTGGGGCTTCTCTCGGCCGCGGAAGGACAAGGGGTTAT CCGCTGGGGCTTCTCTCGGCCGCGGAAGGACAAGGGGTTGT < 41bp 1 0.434337601182353 1 0.62467086315155 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220350113 chr2:220350132 synonymous SNV . 0 40 hm5C_associated_SNPs_31634 0 0 0 0 2 SPEG chr2:220350199 5'GT 220350199 Upstream 68bp
chr3 182586927 182586927 1 + C T PRAD 182586934 + 182586914 182586954 41 GAGTGTAATTGTTCAGGCACCTTCAGGTAACCAATCTAAAC GAGTGTAATTGTTTAGGCACCTTCAGGTAACCAATCTAAAC < 41bp 1 0.307907545105719 1 0.115853518247604 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP11B ENSG00000058063 CDS Human protein_coding chr3:182586934 chr3:182586927 stopgain 1.000 1 14 hm5C_associated_SNPs_31635 0 0 1 0 2 ATP11B chr3:182586866 3'AG 182586866 Downstream 62bp
chr3 182586927 182586927 1 + C T PRAD 182586934 + 182586914 182586954 41 GAGTGTAATTGTTCAGGCACCTTCAGGTAACCAATCTAAAC GAGTGTAATTGTTTAGGCACCTTCAGGTAACCAATCTAAAC < 41bp 1 0.307907545105719 1 0.115853518247604 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP11B ENSG00000058063 CDS Human protein_coding chr3:182586934 chr3:182586927 stopgain 1.000 1 14 hm5C_associated_SNPs_31635 0 0 1 0 2 ATP11B chr3:182586939 5'GT 182586939 Upstream 13bp
chrX 155252727 155252727 1 + T C PRAD 155252735 + 155252715 155252755 41 GGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGC GGTGCCTGAGATCGATGTTCCATCCTACCTGCCTGACCTGC < 41bp 1 0.0989712994898928 1 0.271095454692841 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WASIR1;DDX11L16 ENSG00000182484;ENSG00000270726 ncRNA_exonic Human other chrX:155252735 chrX:155252727 . . 0 13 hm5C_associated_SNPs_31636 0 0 0 0 1 WASIR1;DDX11L16 chrX:155252677 3'AG 155252677 Downstream 51bp
chr16 3014524 3014524 1 + G A PRAD 3014531 + 3014511 3014551 41 GGTTGAGAGCGATGGGGACACAAGCCCTGCAGGGCTTCCTC GGTTGAGAGCGATAGGGACACAAGCCCTGCAGGGCTTCCTC < 41bp 1 0.544447675706318 1 0.399613797664642 experiment 0.911104648587365 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KREMEN2 ENSG00000131650 CDS Human protein_coding chr16:3014531 chr16:3014524 nonsynonymous SNV 0.418 1 14 hm5C_associated_SNPs_31637 0 0 0 0 1 KREMEN2 chr16:3014615 5'GT 3014615 Upstream 92bp
chr10 7745433 7745433 1 + T A PRAD 7745438 + 7745418 7745458 41 TTTCATCTGCTTCTTTCTTTCTGAAGTATCAGGCTTCGAAA TTTCATCTGCTTCTTACTTTCTGAAGTATCAGGCTTCGAAA < 41bp 1 0.77801366474264 1 0.836457371711731 experiment 0.44397267051472 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7745438 chr10:7745433 nonsynonymous SNV 0.063 0 16 hm5C_associated_SNPs_31638 0 0 1 0 1 ITIH2 chr10:7745481 5'GT 7745481 Upstream 49bp
chr3 50255182 50255182 1 + C T PRAD 50255191 + 50255171 50255211 41 AACTTCAGCCACGTGGAGATCGTGAAGGAGAAGGTGCAGCT AACTTCAGCCATGTGGAGATCGTGAAGGAGAAGGTGCAGCT < 41bp 1 0.69435053782613 1 0.573111057281494 experiment 0.611298924347741 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50255191 chr3:50255182 . . 0 12 hm5C_associated_SNPs_31639 0 0 0 0 2 SLC38A3 chr3:50255108 3'AG 50255108 Downstream 75bp
chr3 50255182 50255182 1 + C T PRAD 50255191 + 50255171 50255211 41 AACTTCAGCCACGTGGAGATCGTGAAGGAGAAGGTGCAGCT AACTTCAGCCATGTGGAGATCGTGAAGGAGAAGGTGCAGCT < 41bp 1 0.69435053782613 1 0.573111057281494 experiment 0.611298924347741 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50255191 chr3:50255182 . . 0 12 hm5C_associated_SNPs_31639 0 0 0 0 2 SLC38A3 chr3:50255272 5'GT 50255272 Upstream 91bp
chr9 34648844 34648844 1 + G A PRAD 34648834 + 34648814 34648854 41 CATGGCCCTACCAGACACTGCTGCTGCCCCGTCGGCATGTG CATGGCCCTACCAGACACTGCTGCTGCCCCATCGGCATGTG < 41bp 1 0.374913913004936 1 0.0579164624214172 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GALT ENSG00000213930 CDS Human protein_coding chr9:34648834 chr9:34648844 nonsynonymous SNV 0.999 4 31 hm5C_associated_SNPs_31642 0 0 0 0 2 GALT chr9:34648759 3'AG 34648759 Downstream 86bp
chr9 34648844 34648844 1 + G A PRAD 34648834 + 34648814 34648854 41 CATGGCCCTACCAGACACTGCTGCTGCCCCGTCGGCATGTG CATGGCCCTACCAGACACTGCTGCTGCCCCATCGGCATGTG < 41bp 1 0.374913913004936 1 0.0579164624214172 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GALT ENSG00000213930 CDS Human protein_coding chr9:34648834 chr9:34648844 nonsynonymous SNV 0.999 4 31 hm5C_associated_SNPs_31642 0 0 0 0 2 GALT chr9:34648891 5'GT 34648891 Upstream 48bp
chr8 1851472 1851472 1 + G A PRAD 1851453 + 1851433 1851473 41 CCTGTTGCTTGTAGGACATGCTGAAGAACACCTCCAAAGGC CCTGTTGCTTGTAGGACATGCTGAAGAACACCTCCAAAGAC < 41bp 1 0.700962412996367 1 0.543148577213287 experiment 0.598075174007265 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1851453 chr8:1851472 nonsynonymous SNV 0.257 4 40 hm5C_associated_SNPs_31649 0 0 1 0 1 ARHGEF10 chr8:1851447 3'AG 1851447 Downstream 26bp
chr18 74620343 74620343 1 + C T PRAD 74620335 + 74620315 74620355 41 AGCCTCGATAGATGACAGCACTGTAGACCAGCAGAGCATGC AGCCTCGATAGATGACAGCACTGTAGACTAGCAGAGCATGC < 41bp 1 0.437675565083089 1 0.125077873468399 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74620335 chr18:74620343 stopgain 0.858 1 29 hm5C_associated_SNPs_31651 0 0 1 0 1 ZNF236 chr18:74620276 3'AG 74620276 Downstream 68bp
chr10 134165247 134165247 1 + C T PRAD 134165250 + 134165230 134165270 41 AGCAGGCTCTGATGGAGCAGCAGAGACGGTGAGTCCACACA AGCAGGCTCTGATGGAGTAGCAGAGACGGTGAGTCCACACA < 41bp 1 0.747813875753577 1 0.473490297794342 experiment 0.504372248492846 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRRC27 ENSG00000148814 CDS Human protein_coding chr10:134165250 chr10:134165247 stopgain 0.179 0 18 hm5C_associated_SNPs_31652 0 0 0 0 1 LRRC27 chr10:134165257 5'GT 134165257 Upstream 11bp
chr7 101916637 101916637 1 + G T PRAD 101916646 + 101916626 101916666 41 TTTGGCCACAGGACGCTGTGCAGAGCTGCAAGTCCGTATCA TTTGGCCACAGTACGCTGTGCAGAGCTGCAAGTCCGTATCA < 41bp 1 0.28063846245505 1 0.18296605348587 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101916646 chr7:101916637 nonsynonymous SNV 0.844 0 12 hm5C_associated_SNPs_31653 0 0 0 0 1 CUX1 chr7:101916637 3'AG 101916637 Downstream 1bp
chr19 3527681 3527681 1 + C G PRAD 3527693 + 3527673 3527713 41 CCAAGATCCCCTTCAAGGTGCTGGACGCGCCCGAGCTGCAG CCAAGATCGCCTTCAAGGTGCTGGACGCGCCCGAGCTGCAG < 41bp 1 0.778014075946549 1 0.3650062084198 experiment 0.443971848106903 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3527693 chr19:3527681 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_31655 0 0 1 0 1 FZR1 chr19:3527629 3'AG 3527629 Downstream 53bp
chr7 129064719 129064719 1 + G A PRAD 129064717 + 129064697 129064737 41 TTCACCTTTGATCACTAGGGCCGCCTGCTGAACCTTAGCTG TTCACCTTTGATCACTAGGGCCACCTGCTGAACCTTAGCTG < 41bp 1 0.0451540862887456 1 0.18609282374382 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064717 chr7:129064719 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_31656 0 0 0 0 2 AHCYL2 chr7:129064715 3'AG 129064715 Downstream 5bp
chr7 129064719 129064719 1 + G A PRAD 129064717 + 129064697 129064737 41 TTCACCTTTGATCACTAGGGCCGCCTGCTGAACCTTAGCTG TTCACCTTTGATCACTAGGGCCACCTGCTGAACCTTAGCTG < 41bp 1 0.0451540862887456 1 0.18609282374382 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064717 chr7:129064719 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_31656 0 0 0 0 2 AHCYL2 chr7:129064783 5'GT 129064783 Upstream 65bp
chr4 79396694 79396694 1 + C T PRAD 79396708 + 79396688 79396728 41 AGGCACCGCCAGCTCCAGCTCCAGGGTCAGCTCCCAACCTG AGGCACTGCCAGCTCCAGCTCCAGGGTCAGCTCCCAACCTG < 41bp 1 0.381871158207247 1 0.899659156799316 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79396708 chr4:79396694 synonymous SNV . 0 7 hm5C_associated_SNPs_31657 0 0 0 0 1 FRAS1 chr4:79396760 5'GT 79396760 Upstream 67bp
chr19 803588 803588 1 + T C PRAD 803568 + 803548 803588 41 CCTTCTCTTGCAGCGGGGATCTGACGAGCTTTTCTCTACTT CCTTCTCTTGCAGCGGGGATCTGACGAGCTTTTCTCTACTC < 41bp 1 0.459783628663553 1 0.294523358345032 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:803568 chr19:803588 nonsynonymous SNV 0.012 2 41 hm5C_associated_SNPs_31659 0 0 1 0 2 PTBP1 chr19:803561 3'AG 803561 Downstream 28bp
chr19 803588 803588 1 + T C PRAD 803568 + 803548 803588 41 CCTTCTCTTGCAGCGGGGATCTGACGAGCTTTTCTCTACTT CCTTCTCTTGCAGCGGGGATCTGACGAGCTTTTCTCTACTC < 41bp 1 0.459783628663553 1 0.294523358345032 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:803568 chr19:803588 nonsynonymous SNV 0.012 2 41 hm5C_associated_SNPs_31659 0 0 1 0 2 PTBP1 chr19:803636 5'GT 803636 Upstream 49bp
chr19 40711065 40711065 1 + C T PRAD 40711074 + 40711054 40711094 41 CGGCCAGATTTCGGTAGCATCTTGAAGCGGCTTGAAGTCAT CGGCCAGATTTTGGTAGCATCTTGAAGCGGCTTGAAGTCAT < 41bp 1 0.473371313606016 1 0.79077535867691 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40711074 chr19:40711065 synonymous SNV . 0 12 hm5C_associated_SNPs_31660 0 0 0 0 1 MAP3K10 chr19:40711028 3'AG 40711028 Downstream 38bp
chr11 68822732 68822732 1 + G A PRAD 68822727 + 68822707 68822747 41 ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCCCTGGGA ACCAGCACGGCGGACGTGCGCTACCACGCTGCTCCCTGGGA < 41bp 1 0.367713478051903 1 0.0693256855010986 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68822727 chr11:68822732 nonsynonymous SNV 0.049 5 26 hm5C_associated_SNPs_31661 0 0 0 0 2 TPCN2 chr11:68822643 3'AG 68822643 Downstream 90bp
chr11 68822732 68822732 1 + G A PRAD 68822727 + 68822707 68822747 41 ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCCCTGGGA ACCAGCACGGCGGACGTGCGCTACCACGCTGCTCCCTGGGA < 41bp 1 0.367713478051903 1 0.0693256855010986 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68822727 chr11:68822732 nonsynonymous SNV 0.049 5 26 hm5C_associated_SNPs_31661 0 0 0 0 2 TPCN2 chr11:68822820 5'GT 68822820 Upstream 89bp
chr19 10561280 10561280 1 + C T PRAD 10561299 + 10561279 10561319 41 GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA GTGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA < 41bp 1 0.0356908364141927 1 0.191539198160172 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561299 chr19:10561280 nonsynonymous SNV 0.539 1 2 hm5C_associated_SNPs_31662 0 0 0 0 2 PDE4A chr19:10561279 3'AG 10561279 Downstream 2bp
chr19 10561280 10561280 1 + C T PRAD 10561299 + 10561279 10561319 41 GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA GTGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA < 41bp 1 0.0356908364141927 1 0.191539198160172 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561299 chr19:10561280 nonsynonymous SNV 0.539 1 2 hm5C_associated_SNPs_31662 0 0 0 0 2 PDE4A chr19:10561328 5'GT 10561328 Upstream 49bp
chr7 148873589 148873589 1 + T C PRAD 148873590 + 148873570 148873610 41 TTCAACATCAGATATTCTGTCTTGGATTAAACAAGAAGAAG TTCAACATCAGATATTCTGCCTTGGATTAAACAAGAAGAAG < 41bp 1 0.281164258285507 1 0.0494051873683929 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF398 ENSG00000197024 CDS Human protein_coding chr7:148873590 chr7:148873589 nonsynonymous SNV 0.999 3 20 hm5C_associated_SNPs_31663 0 0 1 0 2 ZNF398 chr7:148873560 3'AG 148873560 Downstream 30bp
chr7 148873589 148873589 1 + T C PRAD 148873590 + 148873570 148873610 41 TTCAACATCAGATATTCTGTCTTGGATTAAACAAGAAGAAG TTCAACATCAGATATTCTGCCTTGGATTAAACAAGAAGAAG < 41bp 1 0.281164258285507 1 0.0494051873683929 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF398 ENSG00000197024 CDS Human protein_coding chr7:148873590 chr7:148873589 nonsynonymous SNV 0.999 3 20 hm5C_associated_SNPs_31663 0 0 1 0 2 ZNF398 chr7:148873673 5'GT 148873673 Upstream 85bp
chr11 128680431 128680431 1 + G A PRAD 128680424 + 128680404 128680444 41 AGCGCCAACGCCAGCTGTATCACCTGGGAGGGGACCAACGG AGCGCCAACGCCAGCTGTATCACCTGGAAGGGGACCAACGG < 41bp 1 0.72836377553482 1 0.386011213064194 experiment 0.543272448930359 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FLI1 ENSG00000151702 CDS Human protein_coding chr11:128680424 chr11:128680431 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_31664 0 0 0 0 1 FLI1 chr11:128680354 3'AG 128680354 Downstream 78bp
chr1 24083516 24083516 1 + G T PRAD 24083522 + 24083502 24083542 41 TTAACCCCAGCCCTGAGGAGCCGGCCTATGATGGCCCAAGC TTAACCCCAGCCCTTAGGAGCCGGCCTATGATGGCCCAAGC < 41bp 1 0.22771809075035 1 0.631844282150269 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ELOA ENSG00000011007 CDS Human protein_coding chr1:24083522 chr1:24083516 stopgain 0.138 0 15 hm5C_associated_SNPs_31665 0 0 1 0 1 ELOA chr1:24083443 3'AG 24083443 Downstream 74bp
chr1 109772145 109772145 1 + G A PRAD 109772129 + 109772109 109772149 41 GGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCCGAGAG GGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCCAAGAG < 41bp 1 0.547216587583377 1 0.362443327903748 experiment 0.905566824833246 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SARS ENSG00000031698 CDS Human protein_coding chr1:109772129 chr1:109772145 nonsynonymous SNV 0.968 2 37 hm5C_associated_SNPs_31668 0 0 1 0 1 SARS chr1:109772194 5'GT 109772194 Upstream 50bp
chr13 111156530 111156530 1 + G T PRAD 111156524 + 111156504 111156544 41 GGGCTCCAGGGAAAGCTGGGCCCCAAGGAAGAGGTGGTGTG GGGCTCCAGGGAAAGCTGGGCCCCAATGAAGAGGTGGTGTG < 41bp 1 0.130103043194035 1 0.149550408124924 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111156524 chr13:111156530 stopgain 0.997 1 27 hm5C_associated_SNPs_31669 0 0 0 0 2 COL4A2 chr13:111156495 3'AG 111156495 Downstream 36bp
chr13 111156530 111156530 1 + G T PRAD 111156524 + 111156504 111156544 41 GGGCTCCAGGGAAAGCTGGGCCCCAAGGAAGAGGTGGTGTG GGGCTCCAGGGAAAGCTGGGCCCCAATGAAGAGGTGGTGTG < 41bp 1 0.130103043194035 1 0.149550408124924 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111156524 chr13:111156530 stopgain 0.997 1 27 hm5C_associated_SNPs_31669 0 0 0 0 2 COL4A2 chr13:111156611 5'GT 111156611 Upstream 82bp
chr13 111156530 111156530 1 + G T PRAD 111156527 + 111156507 111156547 41 CTCCAGGGAAAGCTGGGCCCCAAGGAAGAGGTGGTGTGTCT CTCCAGGGAAAGCTGGGCCCCAATGAAGAGGTGGTGTGTCT < 41bp 1 0.0716540303865096 1 0.12142813205719 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111156527 chr13:111156530 stopgain 0.997 1 24 hm5C_associated_SNPs_31670 0 0 0 0 2 COL4A2 chr13:111156495 3'AG 111156495 Downstream 36bp
chr13 111156530 111156530 1 + G T PRAD 111156527 + 111156507 111156547 41 CTCCAGGGAAAGCTGGGCCCCAAGGAAGAGGTGGTGTGTCT CTCCAGGGAAAGCTGGGCCCCAATGAAGAGGTGGTGTGTCT < 41bp 1 0.0716540303865096 1 0.12142813205719 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111156527 chr13:111156530 stopgain 0.997 1 24 hm5C_associated_SNPs_31670 0 0 0 0 2 COL4A2 chr13:111156611 5'GT 111156611 Upstream 82bp
chr7 142459851 142459851 1 + G A PRAD 142459834 + 142459814 142459854 41 CGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCTCTGGCT CGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCTCTAGCT < 41bp 1 0.634459258178086 1 0.172712564468384 experiment 0.731081483643828 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459834 chr7:142459851 nonsynonymous SNV 0.475 5 38 hm5C_associated_SNPs_31671 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 28bp
chr7 142459851 142459851 1 + G A PRAD 142459841 + 142459821 142459861 41 CCAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAA CCAGCCACTGGCACGAAGTGCCTCATCTCTAGCTGGGGCAA < 41bp 1 0.428374873928773 1 0.0359977781772614 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459841 chr7:142459851 nonsynonymous SNV 0.475 5 31 hm5C_associated_SNPs_31672 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 28bp
chr7 142459851 142459851 1 + G A PRAD 142459842 + 142459822 142459862 41 CAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAC CAGCCACTGGCACGAAGTGCCTCATCTCTAGCTGGGGCAAC < 41bp 1 0.472762527954721 1 0.0370602607727051 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459842 chr7:142459851 nonsynonymous SNV 0.475 5 30 hm5C_associated_SNPs_31673 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 28bp
chr7 142459851 142459851 1 + G A PRAD 142459844 + 142459824 142459864 41 GCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACAC GCCACTGGCACGAAGTGCCTCATCTCTAGCTGGGGCAACAC < 41bp 1 0.478860544624538 1 0.0212027132511139 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459844 chr7:142459851 nonsynonymous SNV 0.475 5 28 hm5C_associated_SNPs_31674 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 28bp
chr7 142459851 142459851 1 + G A PRAD 142459849 + 142459829 142459869 41 TGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACACTGCGA TGGCACGAAGTGCCTCATCTCTAGCTGGGGCAACACTGCGA < 41bp 1 0.764006327655819 1 0.411515176296234 experiment 0.471987344688363 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459849 chr7:142459851 nonsynonymous SNV 0.475 5 23 hm5C_associated_SNPs_31675 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 28bp
chr7 142459851 142459851 1 + G A PRAD 142459862 + 142459842 142459882 41 CTCATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGA CTCATCTCTAGCTGGGGCAACACTGCGAGCTCTGGCGGTGA < 41bp 1 0.299493018705821 1 0.125606834888458 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459862 chr7:142459851 nonsynonymous SNV 0.475 5 10 hm5C_associated_SNPs_31676 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 28bp
chr7 142459851 142459851 1 + G A PRAD 142459864 + 142459844 142459884 41 CATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGT CATCTCTAGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGT < 41bp 1 0.699837655259237 1 0.461177110671997 experiment 0.600324689481526 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459864 chr7:142459851 nonsynonymous SNV 0.475 5 8 hm5C_associated_SNPs_31677 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 28bp
chr7 142459851 142459851 1 + G A PRAD 142459867 + 142459847 142459887 41 CTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGG CTCTAGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGG < 41bp 1 0.386319508077408 1 0.494054347276688 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459867 chr7:142459851 nonsynonymous SNV 0.475 5 5 hm5C_associated_SNPs_31678 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 28bp
chr7 142459851 142459851 1 + G A PRAD 142459871 + 142459851 142459891 41 GGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCC AGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCC < 41bp 1 0.391333349173397 1 0.22246778011322 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459871 chr7:142459851 nonsynonymous SNV 0.475 5 1 hm5C_associated_SNPs_31679 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 28bp
chr7 150773114 150773114 1 + T C PRAD 150773103 + 150773083 150773123 41 CTGTCTCCGCCCCCCAGGTCCGGACCCTCCGTATGCACCTG CTGTCTCCGCCCCCCAGGTCCGGACCCTCCGCATGCACCTG < 41bp 1 0.261647352260614 1 0.186893105506897 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150773103 chr7:150773114 synonymous SNV . 0 32 hm5C_associated_SNPs_31680 0 0 1 0 1 SLC4A2 chr7:150773100 3'AG 150773100 Downstream 15bp
chr14 64676752 64676752 1 + G A PRAD 64676732 + 64676712 64676752 41 AGCAGTACCGGCGGCTGGCCCGGGAGAACCGCACAGACACG AGCAGTACCGGCGGCTGGCCCGGGAGAACCGCACAGACACA < 41bp 1 0.573880290298963 1 0.959205150604248 experiment 0.852239419402075 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64676732 chr14:64676752 synonymous SNV . 0 41 hm5C_associated_SNPs_31681 0 0 0 0 2 SYNE2 chr14:64676660 3'AG 64676660 Downstream 93bp
chr14 64676752 64676752 1 + G A PRAD 64676732 + 64676712 64676752 41 AGCAGTACCGGCGGCTGGCCCGGGAGAACCGCACAGACACG AGCAGTACCGGCGGCTGGCCCGGGAGAACCGCACAGACACA < 41bp 1 0.573880290298963 1 0.959205150604248 experiment 0.852239419402075 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64676732 chr14:64676752 synonymous SNV . 0 41 hm5C_associated_SNPs_31681 0 0 0 0 2 SYNE2 chr14:64676669 3'AG 64676669 Downstream 84bp
chr2 209190015 209190015 1 + T G PRAD 209190000 + 209189980 209190020 41 GTTTTTGTTTGTAGAACAAACCAAGACACTGATGTTTTTTG GTTTTTGTTTGTAGAACAAACCAAGACACTGATGTGTTTTG < 41bp 1 0.10896670097976 1 0.179553985595703 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PIKFYVE ENSG00000115020 CDS Human protein_coding chr2:209190000 chr2:209190015 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_31682 0 0 1 0 1 PIKFYVE chr2:209189994 3'AG 209189994 Downstream 22bp
chr7 66489943 66489943 1 + G A PRAD 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGGACCATCAAAGCCTAAATTCCATT < 41bp 1 0.339828082513553 1 0.0981194078922272 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489943 synonymous SNV . 0 26 hm5C_associated_SNPs_31684 0 0 0 0 2 TYW1 chr7:66489887 3'AG 66489887 Downstream 57bp
chr7 66489943 66489943 1 + G A PRAD 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGGACCATCAAAGCCTAAATTCCATT < 41bp 1 0.339828082513553 1 0.0981194078922272 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489943 synonymous SNV . 0 26 hm5C_associated_SNPs_31684 0 0 0 0 2 TYW1 chr7:66490009 5'GT 66490009 Upstream 67bp
chr12 62777707 62777707 1 + A C PRAD 62777692 + 62777672 62777712 41 TGTCAAGAACTGTTAGCTTTCCTATTAGATGGATTACATGA TGTCAAGAACTGTTAGCTTTCCTATTAGATGGATTCCATGA < 41bp 1 0.0898466441595531 1 0.326505094766617 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient USP15 ENSG00000135655 CDS Human protein_coding chr12:62777692 chr12:62777707 nonsynonymous SNV 0.995 4 36 hm5C_associated_SNPs_31685 0 0 1 0 2 USP15 chr12:62777621 3'AG 62777621 Downstream 87bp
chr12 62777707 62777707 1 + A C PRAD 62777692 + 62777672 62777712 41 TGTCAAGAACTGTTAGCTTTCCTATTAGATGGATTACATGA TGTCAAGAACTGTTAGCTTTCCTATTAGATGGATTCCATGA < 41bp 1 0.0898466441595531 1 0.326505094766617 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient USP15 ENSG00000135655 CDS Human protein_coding chr12:62777692 chr12:62777707 nonsynonymous SNV 0.995 4 36 hm5C_associated_SNPs_31685 0 0 1 0 2 USP15 chr12:62777779 5'GT 62777779 Upstream 73bp
chr16 56659784 56659784 1 + C T PRAD 56659789 + 56659769 56659809 41 CCCCAACTGCTCTTGCGCCACTGGTAAGGGAAGCTCTGCGC CCCCAACTGCTCTTGTGCCACTGGTAAGGGAAGCTCTGCGC < 41bp 1 0.674461862523839 1 0.353311866521835 experiment 0.651076274952322 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MT1E ENSG00000169715 CDS Human protein_coding chr16:56659789 chr16:56659784 synonymous SNV . 0 16 hm5C_associated_SNPs_31686 0 0 1 0 1 MT1E chr16:56659791 5'GT 56659791 Upstream 8bp
chr8 145150822 145150822 1 + G A PRAD 145150830 + 145150810 145150850 41 GGCAGGGGGTGCGGGGCTGGCCATGGCTCTGCATTCGGCTG GGCAGGGGGTGCAGGGCTGGCCATGGCTCTGCATTCGGCTG < 41bp 1 0.43696823695928 1 0.419718772172928 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145150830 chr8:145150822 synonymous SNV . 0 13 hm5C_associated_SNPs_31687 0 0 1 0 1 CYC1 chr8:145150736 3'AG 145150736 Downstream 87bp
chr17 37676290 37676290 1 + A G PRAD 37676272 + 37676252 37676292 41 CTAGATCCTAGTAAGCGGTGCACAGCTGAACAGACCCTACA CTAGATCCTAGTAAGCGGTGCACAGCTGAACAGACCCTGCA < 41bp 1 0.198131568957481 1 0.15754646062851 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37676272 chr17:37676290 synonymous SNV . 0 39 hm5C_associated_SNPs_31688 0 0 1 0 1 CDK12 chr17:37676209 3'AG 37676209 Downstream 82bp
chr2 75081432 75081432 1 + C A PRAD 75081425 + 75081405 75081445 41 TTCCTCCTTTTTCAGGTTGACCAGTATCTCTACCACATGCG TTCCTCCTTTTTCAGGTTGACCAGTATATCTACCACATGCG < 41bp 1 0.0871536433483426 1 0.0739268660545349 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HK2 ENSG00000159399 CDS Human protein_coding chr2:75081425 chr2:75081432 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_31692 0 0 1 0 1 HK2 chr2:75081420 3'AG 75081420 Downstream 13bp
chr1 24020353 24020353 1 + T C PRAD 24020369 + 24020349 24020389 41 CCACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGG CCACCGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGG < 41bp 1 0.13394977560315 1 0.469079107046127 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24020369 chr1:24020353 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_31695 0 0 1 0 2 RPL11 chr1:24020297 3'AG 24020297 Downstream 57bp
chr1 24020353 24020353 1 + T C PRAD 24020369 + 24020349 24020389 41 CCACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGG CCACCGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGG < 41bp 1 0.13394977560315 1 0.469079107046127 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24020369 chr1:24020353 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_31695 0 0 1 0 2 RPL11 chr1:24020403 5'GT 24020403 Upstream 51bp
chr1 24020353 24020353 1 + T C PRAD 24020370 + 24020350 24020390 41 CACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGGA CACCGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGGA < 41bp 1 0.588124215118248 1 0.40295347571373 experiment 0.823751569763504 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24020370 chr1:24020353 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_31696 0 0 1 0 2 RPL11 chr1:24020297 3'AG 24020297 Downstream 57bp
chr1 24020353 24020353 1 + T C PRAD 24020370 + 24020350 24020390 41 CACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGGA CACCGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGGA < 41bp 1 0.588124215118248 1 0.40295347571373 experiment 0.823751569763504 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24020370 chr1:24020353 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_31696 0 0 1 0 2 RPL11 chr1:24020403 5'GT 24020403 Upstream 51bp
chr17 37814071 37814071 1 + C T PRAD 37814079 + 37814059 37814099 41 TCCTAGGCTATGCCGTGCTGCGGCTCCGGCACTGGTGGGTG TCCTAGGCTATGTCGTGCTGCGGCTCCGGCACTGGTGGGTG < 41bp 1 0.433603179573278 1 0.241837352514267 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STARD3 ENSG00000131748 CDS Human protein_coding chr17:37814079 chr17:37814071 nonsynonymous SNV 0.891 4 13 hm5C_associated_SNPs_31697 0 0 1 0 3 STARD3 chr17:37814028 3'AG 37814028 Downstream 44bp
chr17 37814071 37814071 1 + C T PRAD 37814079 + 37814059 37814099 41 TCCTAGGCTATGCCGTGCTGCGGCTCCGGCACTGGTGGGTG TCCTAGGCTATGTCGTGCTGCGGCTCCGGCACTGGTGGGTG < 41bp 1 0.433603179573278 1 0.241837352514267 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STARD3 ENSG00000131748 CDS Human protein_coding chr17:37814079 chr17:37814071 nonsynonymous SNV 0.891 4 13 hm5C_associated_SNPs_31697 0 0 1 0 3 STARD3 chr17:37814092 5'GT 37814092 Upstream 22bp
chr17 37814071 37814071 1 + C T PRAD 37814079 + 37814059 37814099 41 TCCTAGGCTATGCCGTGCTGCGGCTCCGGCACTGGTGGGTG TCCTAGGCTATGTCGTGCTGCGGCTCCGGCACTGGTGGGTG < 41bp 1 0.433603179573278 1 0.241837352514267 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STARD3 ENSG00000131748 CDS Human protein_coding chr17:37814079 chr17:37814071 nonsynonymous SNV 0.891 4 13 hm5C_associated_SNPs_31697 0 0 1 0 3 STARD3 chr17:37814105 5'GT 37814105 Upstream 35bp
chr11 64137784 64137784 1 + C T PRAD 64137798 + 64137778 64137818 41 AAAATCCGCGAGGGGCGCTTCTCCCTTGACGGGGAGGCCTG AAAATCTGCGAGGGGCGCTTCTCCCTTGACGGGGAGGCCTG < 41bp 1 0.469035257564784 1 0.515236735343933 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137798 chr11:64137784 nonsynonymous SNV 0.994 2 7 hm5C_associated_SNPs_31698 0 0 0 0 3 RPS6KA4 chr11:64137697 3'AG 64137697 Downstream 88bp
chr11 64137784 64137784 1 + C T PRAD 64137798 + 64137778 64137818 41 AAAATCCGCGAGGGGCGCTTCTCCCTTGACGGGGAGGCCTG AAAATCTGCGAGGGGCGCTTCTCCCTTGACGGGGAGGCCTG < 41bp 1 0.469035257564784 1 0.515236735343933 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137798 chr11:64137784 nonsynonymous SNV 0.994 2 7 hm5C_associated_SNPs_31698 0 0 0 0 3 RPS6KA4 chr11:64137760 3'AG 64137760 Downstream 25bp
chr11 64137784 64137784 1 + C T PRAD 64137798 + 64137778 64137818 41 AAAATCCGCGAGGGGCGCTTCTCCCTTGACGGGGAGGCCTG AAAATCTGCGAGGGGCGCTTCTCCCTTGACGGGGAGGCCTG < 41bp 1 0.469035257564784 1 0.515236735343933 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137798 chr11:64137784 nonsynonymous SNV 0.994 2 7 hm5C_associated_SNPs_31698 0 0 0 0 3 RPS6KA4 chr11:64137856 5'GT 64137856 Upstream 73bp
chr15 101169708 101169708 1 + G A PRAD 101169701 + 101169681 101169721 41 CTCTTCACTATGCAGCCATGCATGGCCGGGCCCGCATTGCA CTCTTCACTATGCAGCCATGCATGGCCAGGCCCGCATTGCA < 41bp 1 0.361680141048878 1 0.0549403727054596 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ASB7 ENSG00000183475 CDS Human protein_coding chr15:101169701 chr15:101169708 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_31701 0 0 1 0 1 ASB7 chr15:101169642 3'AG 101169642 Downstream 67bp
chr1 17953976 17953976 1 + G T PRAD 17953983 + 17953963 17954003 41 ACCAAGAGCGTCAGTGACCGCAGCAGCCTCAACAAGGTGAG ACCAAGAGCGTCATTGACCGCAGCAGCCTCAACAAGGTGAG < 41bp 1 0.782460500585135 1 0.419499576091766 experiment 0.435078998829731 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control ARHGEF10L ENSG00000074964 CDS Human protein_coding chr1:17953983 chr1:17953976 nonsynonymous SNV 0.944 4 14 hm5C_associated_SNPs_31707 0 0 1 1 1 ARHGEF10L chr1:17953998 5'GT 17953998 Upstream 23bp
chr16 2636776 2636776 1 + G A PRAD 2636784 + 2636764 2636804 41 CCCCAGAGGTCAGGCAGCAACATAGAGCAGTACATTCACGA CCCCAGAGGTCAAGCAGCAACATAGAGCAGTACATTCACGA < 41bp 1 0.197577826716951 1 0.156669318675995 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDPK1 ENSG00000140992 CDS Human protein_coding chr16:2636784 chr16:2636776 nonsynonymous SNV 0.996 1 13 hm5C_associated_SNPs_31708 0 0 0 0 1 PDPK1 chr16:2636677 3'AG 2636677 Downstream 100bp
chr7 150773232 150773232 1 + G A PRAD 150773215 + 150773195 150773235 41 CCCCTTCATCCTCATCCTCACAGTGCCGCTCCGCATGGTGG CCCCTTCATCCTCATCCTCACAGTGCCGCTCCGCATGATGG < 41bp 1 0.195154368337772 1 0.0780059397220612 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150773215 chr7:150773232 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_31709 0 0 1 0 1 SLC4A2 chr7:150773273 5'GT 150773273 Upstream 42bp
chr7 150773232 150773232 1 + G A PRAD 150773220 + 150773200 150773240 41 TCATCCTCATCCTCACAGTGCCGCTCCGCATGGTGGTGCTC TCATCCTCATCCTCACAGTGCCGCTCCGCATGATGGTGCTC < 41bp 1 0.0502533550566948 1 0.0398400127887726 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150773220 chr7:150773232 nonsynonymous SNV 1.000 0 33 hm5C_associated_SNPs_31710 0 0 1 0 1 SLC4A2 chr7:150773273 5'GT 150773273 Upstream 42bp
chr10 106014945 106014945 1 + C G PRAD 106014932 + 106014912 106014952 41 CCCCGGCAGGAAGCGCGCCCCCGGGGCCGGTCCCGGAGGGC CCCCGGCAGGAAGCGCGCCCCCGGGGCCGGTCCGGGAGGGC < 41bp 1 0.754850468324987 1 0.871753215789795 experiment 0.490299063350027 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GSTO1 ENSG00000148834 CDS Human protein_coding chr10:106014932 chr10:106014945 nonsynonymous SNV 0.348 4 34 hm5C_associated_SNPs_31712 0 0 1 0 2 GSTO1 chr10:106014921 3'AG 106014921 Downstream 25bp
chr10 106014945 106014945 1 + C G PRAD 106014932 + 106014912 106014952 41 CCCCGGCAGGAAGCGCGCCCCCGGGGCCGGTCCCGGAGGGC CCCCGGCAGGAAGCGCGCCCCCGGGGCCGGTCCGGGAGGGC < 41bp 1 0.754850468324987 1 0.871753215789795 experiment 0.490299063350027 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GSTO1 ENSG00000148834 CDS Human protein_coding chr10:106014932 chr10:106014945 nonsynonymous SNV 0.348 4 34 hm5C_associated_SNPs_31712 0 0 1 0 2 GSTO1 chr10:106015029 5'GT 106015029 Upstream 85bp
chr20 37144919 37144919 1 + G A PRAD 37144939 + 37144919 37144959 41 GCAAGAATTGAATCAGTATCCCTGCCTTAAACATCTGCCTC ACAAGAATTGAATCAGTATCCCTGCCTTAAACATCTGCCTC < 41bp 1 0.124098810451316 1 0.142126381397247 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37144939 chr20:37144919 synonymous SNV . 0 1 hm5C_associated_SNPs_31713 0 0 1 0 2 RALGAPB chr20:37144835 3'AG 37144835 Downstream 85bp
chr20 37144919 37144919 1 + G A PRAD 37144939 + 37144919 37144959 41 GCAAGAATTGAATCAGTATCCCTGCCTTAAACATCTGCCTC ACAAGAATTGAATCAGTATCCCTGCCTTAAACATCTGCCTC < 41bp 1 0.124098810451316 1 0.142126381397247 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37144939 chr20:37144919 synonymous SNV . 0 1 hm5C_associated_SNPs_31713 0 0 1 0 2 RALGAPB chr20:37145013 5'GT 37145013 Upstream 95bp
chr6 25551235 25551235 1 + A G PRAD 25551227 + 25551207 25551247 41 CGACAAGACTTGATTCATGCCAGCACCGAAAAGATTTCTAT CGACAAGACTTGATTCATGCCAGCACCGGAAAGATTTCTAT < 41bp 1 0.447361607975078 1 0.375179916620255 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25551227 chr6:25551235 nonsynonymous SNV 0.998 0 29 hm5C_associated_SNPs_31714 0 0 0 0 2 CARMIL1 chr6:25551138 3'AG 25551138 Downstream 98bp
chr6 25551235 25551235 1 + A G PRAD 25551227 + 25551207 25551247 41 CGACAAGACTTGATTCATGCCAGCACCGAAAAGATTTCTAT CGACAAGACTTGATTCATGCCAGCACCGGAAAGATTTCTAT < 41bp 1 0.447361607975078 1 0.375179916620255 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25551227 chr6:25551235 nonsynonymous SNV 0.998 0 29 hm5C_associated_SNPs_31714 0 0 0 0 2 CARMIL1 chr6:25551313 5'GT 25551313 Upstream 79bp
chr20 34458923 34458923 1 + A G PRAD 34458925 + 34458905 34458945 41 AAACACTGACAAAGACTTATCGAGGAGACGTTCCTCCAGGC AAACACTGACAAAGACTTGTCGAGGAGACGTTCCTCCAGGC < 41bp 1 0.729455516913988 1 0.938445389270782 experiment 0.541088966172023 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PHF20 ENSG00000025293 CDS Human protein_coding chr20:34458925 chr20:34458923 synonymous SNV . 0 19 hm5C_associated_SNPs_31715 0 0 1 0 1 PHF20 chr20:34458877 3'AG 34458877 Downstream 47bp
chr12 27835611 27835611 1 + G T PRAD 27835622 + 27835602 27835642 41 GGGTTGATGGTCGAATGCTACATTACATGACTGTTGTAAGT GGGTTGATGTTCGAATGCTACATTACATGACTGTTGTAAGT < 41bp 1 0.202292637077619 1 0.112459033727646 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27835622 chr12:27835611 nonsynonymous SNV 0.991 3 10 hm5C_associated_SNPs_31716 0 0 1 0 2 PPFIBP1 chr12:27835548 3'AG 27835548 Downstream 64bp
chr12 27835611 27835611 1 + G T PRAD 27835622 + 27835602 27835642 41 GGGTTGATGGTCGAATGCTACATTACATGACTGTTGTAAGT GGGTTGATGTTCGAATGCTACATTACATGACTGTTGTAAGT < 41bp 1 0.202292637077619 1 0.112459033727646 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27835622 chr12:27835611 nonsynonymous SNV 0.991 3 10 hm5C_associated_SNPs_31716 0 0 1 0 2 PPFIBP1 chr12:27835636 5'GT 27835636 Upstream 26bp
chr6 107824969 107824969 1 + G A PRAD 107824953 + 107824933 107824973 41 GAGGATATTGAATTCAGGAGCTACCCTACAGATGGGGAGAG GAGGATATTGAATTCAGGAGCTACCCTACAGATGGGAAGAG < 41bp 1 0.111093024561189 1 0.127942502498627 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SOBP ENSG00000112320 CDS Human protein_coding chr6:107824953 chr6:107824969 nonsynonymous SNV 0.997 4 37 hm5C_associated_SNPs_31717 0 0 1 0 1 SOBP chr6:107824999 5'GT 107824999 Upstream 31bp
chr6 107824969 107824969 1 + G A PRAD 107824957 + 107824937 107824977 41 ATATTGAATTCAGGAGCTACCCTACAGATGGGGAGAGCCGG ATATTGAATTCAGGAGCTACCCTACAGATGGGAAGAGCCGG < 41bp 1 0.0167922465000783 1 0.159766227006912 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SOBP ENSG00000112320 CDS Human protein_coding chr6:107824957 chr6:107824969 nonsynonymous SNV 0.997 4 33 hm5C_associated_SNPs_31718 0 0 1 0 1 SOBP chr6:107824999 5'GT 107824999 Upstream 31bp
chr6 107824969 107824969 1 + G A PRAD 107824958 + 107824938 107824978 41 TATTGAATTCAGGAGCTACCCTACAGATGGGGAGAGCCGGC TATTGAATTCAGGAGCTACCCTACAGATGGGAAGAGCCGGC < 41bp 1 0.638382830118621 1 0.428458392620087 experiment 0.723234339762758 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SOBP ENSG00000112320 CDS Human protein_coding chr6:107824958 chr6:107824969 nonsynonymous SNV 0.997 4 32 hm5C_associated_SNPs_31719 0 0 1 0 1 SOBP chr6:107824999 5'GT 107824999 Upstream 31bp
chr4 41621299 41621299 1 + G A PRAD 41621300 + 41621280 41621320 41 GGCGGACTTCCCATGGTGAGCCGAAATCAGCAGTGCCTTTT GGCGGACTTCCCATGGTGAACCGAAATCAGCAGTGCCTTTT < 41bp 1 0.622518134085707 1 0.105866551399231 experiment 0.754963731828586 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41621300 chr4:41621299 synonymous SNV . 0 20 hm5C_associated_SNPs_31720 0 0 0 0 1 LIMCH1 chr4:41621205 3'AG 41621205 Downstream 95bp
chr11 118498113 118498113 1 + T C PRAD 118498128 + 118498108 118498148 41 TGAGCTCTATTGAGAAGGACCTGCAAGAGATCATGGACTCA TGAGCCCTATTGAGAAGGACCTGCAAGAGATCATGGACTCA < 41bp 1 0.54811087550635 1 0.13400200009346 experiment 0.903778248987299 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118498128 chr11:118498113 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_31721 0 0 1 0 1 PHLDB1 chr11:118498024 3'AG 118498024 Downstream 90bp
chr12 62777656 62777656 1 + A G PRAD 62777675 + 62777655 62777695 41 GATATCAGCAGCAAGACTGTCAAGAACTGTTAGCTTTCCTA GGTATCAGCAGCAAGACTGTCAAGAACTGTTAGCTTTCCTA < 41bp 1 0.731181964813398 1 0.84530508518219 experiment 0.537636070373204 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP15 ENSG00000135655 CDS Human protein_coding chr12:62777675 chr12:62777656 synonymous SNV . 0 2 hm5C_associated_SNPs_31722 0 0 1 0 1 USP15 chr12:62777621 3'AG 62777621 Downstream 36bp
chr7 4824597 4824597 1 + C T PRAD 4824600 + 4824580 4824620 41 TCCGCCACCTCCTCTGCCGGCCGCCTGCTGCCGCCCCGGGA TCCGCCACCTCCTCTGCTGGCCGCCTGCTGCCGCCCCGGGA < 41bp 1 0.172975775114733 1 0.238365769386292 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824600 chr7:4824597 synonymous SNV . 0 18 hm5C_associated_SNPs_31723 1 0 1 0 2 AP5Z1 chr7:4824539 3'AG 4824539 Downstream 59bp
chr7 4824597 4824597 1 + C T PRAD 4824600 + 4824580 4824620 41 TCCGCCACCTCCTCTGCCGGCCGCCTGCTGCCGCCCCGGGA TCCGCCACCTCCTCTGCTGGCCGCCTGCTGCCGCCCCGGGA < 41bp 1 0.172975775114733 1 0.238365769386292 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824600 chr7:4824597 synonymous SNV . 0 18 hm5C_associated_SNPs_31723 1 0 1 0 2 AP5Z1 chr7:4824679 5'GT 4824679 Upstream 83bp
chr7 4824597 4824597 1 + C T PRAD 4824610 + 4824590 4824630 41 CCTCTGCCGGCCGCCTGCTGCCGCCCCGGGAGCGGCTTCGG CCTCTGCTGGCCGCCTGCTGCCGCCCCGGGAGCGGCTTCGG < 41bp 1 0.195175405701816 1 0.259042203426361 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824610 chr7:4824597 synonymous SNV . 0 8 hm5C_associated_SNPs_31724 1 0 1 0 2 AP5Z1 chr7:4824539 3'AG 4824539 Downstream 59bp
chr7 4824597 4824597 1 + C T PRAD 4824610 + 4824590 4824630 41 CCTCTGCCGGCCGCCTGCTGCCGCCCCGGGAGCGGCTTCGG CCTCTGCTGGCCGCCTGCTGCCGCCCCGGGAGCGGCTTCGG < 41bp 1 0.195175405701816 1 0.259042203426361 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824610 chr7:4824597 synonymous SNV . 0 8 hm5C_associated_SNPs_31724 1 0 1 0 2 AP5Z1 chr7:4824679 5'GT 4824679 Upstream 83bp
chr6 53660191 53660191 1 + A G PRAD 53660192 + 53660172 53660212 41 GAGCTGCTGCTGGACGCCAACCAGCTCCGCGAGCTGCCCGA GAGCTGCTGCTGGACGCCAGCCAGCTCCGCGAGCTGCCCGA < 41bp 1 0.497932083076772 1 0.601176142692566 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53660192 chr6:53660191 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_31727 0 0 0 0 1 LRRC1 chr6:53660213 5'GT 53660213 Upstream 23bp
chrX 40457949 40457949 1 + T C PRAD 40457957 + 40457937 40457977 41 ACCTGCTCTTTCTTTCTGAACTGCAAGTGCTACATGATATT ACCTGCTCTTTCCTTCTGAACTGCAAGTGCTACATGATATT < 41bp 1 0.693023650303049 1 0.0283918380737305 experiment 0.613952699393902 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40457957 chrX:40457949 nonsynonymous SNV 0.999 4 13 hm5C_associated_SNPs_31728 0 0 1 0 2 ATP6AP2 chrX:40457933 3'AG 40457933 Downstream 17bp
chrX 40457949 40457949 1 + T C PRAD 40457957 + 40457937 40457977 41 ACCTGCTCTTTCTTTCTGAACTGCAAGTGCTACATGATATT ACCTGCTCTTTCCTTCTGAACTGCAAGTGCTACATGATATT < 41bp 1 0.693023650303049 1 0.0283918380737305 experiment 0.613952699393902 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40457957 chrX:40457949 nonsynonymous SNV 0.999 4 13 hm5C_associated_SNPs_31728 0 0 1 0 2 ATP6AP2 chrX:40457986 5'GT 40457986 Upstream 38bp
chr16 20792044 20792044 1 + G C PRAD 20792052 + 20792032 20792072 41 GCAGACATGCCAGTGACAGCCACACCTGTGTGAAGACAAAA GCAGACATGCCACTGACAGCCACACCTGTGTGAAGACAAAA < 41bp 1 0.257217992947477 1 0.299314349889755 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACSM3;ERI2 ENSG00000005187;ENSG00000196678 CDS Human other chr16:20792052 chr16:20792044 nonsynonymous SNV 0.951 1 13 hm5C_associated_SNPs_31729 0 0 1 0 1 ACSM3;ERI2 chr16:20792036 3'AG 20792036 Downstream 9bp
chr2 97464910 97464910 1 + C A PRAD 97464916 + 97464896 97464936 41 AGTACTACGCCCGCCATTACCTGTACACCCGAAATAAGCCG AGTACTACGCCCGCAATTACCTGTACACCCGAAATAAGCCG < 41bp 1 0.610505435391008 1 0.799312233924866 experiment 0.778989129217984 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CNNM4 ENSG00000158158 CDS Human protein_coding chr2:97464916 chr2:97464910 nonsynonymous SNV 0.895 1 15 hm5C_associated_SNPs_31730 0 0 1 0 1 CNNM4 chr2:97464963 5'GT 97464963 Upstream 54bp
chr12 64173824 64173824 1 + C T PRAD 64173833 + 64173813 64173853 41 TACCACGTCTTCTTCGGGCGCCGCCGCCAGGCGCCGGCCGG TACCACGTCTTTTTCGGGCGCCGCCGCCAGGCGCCGGCCGG < 41bp 1 0.39753104110097 1 0.0804232358932495 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control TMEM5 ENSG00000118600 CDS Human protein_coding chr12:64173833 chr12:64173824 synonymous SNV . 0 12 hm5C_associated_SNPs_31731 0 0 1 0 1 TMEM5 chr12:64173909 5'GT 64173909 Upstream 86bp
chr10 99517472 99517472 1 + G C PRAD 99517475 + 99517455 99517495 41 GCCCAAGTCCTCCATGGGGGCCACAGGTGAGTGGTGCAGGT GCCCAAGTCCTCCATGGCGGCCACAGGTGAGTGGTGCAGGT < 41bp 1 0.450668860124596 1 0.15926006436348 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99517475 chr10:99517472 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_31732 0 0 1 0 2 ZFYVE27 chr10:99517399 3'AG 99517399 Downstream 74bp
chr10 99517472 99517472 1 + G C PRAD 99517475 + 99517455 99517495 41 GCCCAAGTCCTCCATGGGGGCCACAGGTGAGTGGTGCAGGT GCCCAAGTCCTCCATGGCGGCCACAGGTGAGTGGTGCAGGT < 41bp 1 0.450668860124596 1 0.15926006436348 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99517475 chr10:99517472 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_31732 0 0 1 0 2 ZFYVE27 chr10:99517480 5'GT 99517480 Upstream 9bp
chr1 145325998 145325998 1 + G T PRAD 145325991 + 145325971 145326011 41 GATGAGAAAGGGCCTGAAGTCTTGCAAGACTCACTGGATAG GATGAGAAAGGGCCTGAAGTCTTGCAATACTCACTGGATAG < 41bp 1 0.164332815096655 1 0.156983315944672 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NBPF10 ENSG00000163386 CDS Human other chr1:145325991 chr1:145325998 nonsynonymous SNV . 0 28 hm5C_associated_SNPs_31733 0 0 0 0 1 NBPF10 chr1:145325952 3'AG 145325952 Downstream 47bp
chr6 44218061 44218061 1 + G A PRAD 44218068 + 44218048 44218088 41 GGAAATTAGTGATGATGAGGCAGAGGAAGAGAAAGGTGAGA GGAAATTAGTGATAATGAGGCAGAGGAAGAGAAAGGTGAGA < 41bp 1 0.404470744950091 1 0.628793239593506 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44218068 chr6:44218061 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_31734 0 0 1 0 1 HSP90AB1 chr6:44218028 3'AG 44218028 Downstream 34bp
chr2 109365452 109365452 1 + C T PRAD 109365446 + 109365426 109365466 41 ATTGTTGAAACTTTTGCCAACAAAAGCGGGCAGTCTGCATT ATTGTTGAAACTTTTGCCAACAAAAGTGGGCAGTCTGCATT < 41bp 1 0.41975583165593 1 0.173236608505249 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109365446 chr2:109365452 synonymous SNV . 0 27 hm5C_associated_SNPs_31735 0 0 1 0 1 RANBP2 chr2:109365376 3'AG 109365376 Downstream 77bp
chr1 222833531 222833531 1 + A G PRAD 222833549 + 222833529 222833569 41 CCAGAATGGCTCTTTTGGCCCATCCCCTGTGAGTGGTGGAG CCGGAATGGCTCTTTTGGCCCATCCCCTGTGAGTGGTGGAG < 41bp 1 0.100622357224189 1 0.0977946221828461 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MIA3 ENSG00000154305 CDS Human protein_coding chr1:222833549 chr1:222833531 nonsynonymous SNV 1.000 0 3 hm5C_associated_SNPs_31738 0 0 1 0 1 MIA3 chr1:222833519 3'AG 222833519 Downstream 13bp
chr2 29148007 29148007 1 + T G PRAD 29147999 + 29147979 29148019 41 TTGTATATGGCAGTTGGTTTCAGCCTACTATTGAGCGAGTG TTGTATATGGCAGTTGGTTTCAGCCTACGATTGAGCGAGTG < 41bp 1 0.72620990510003 1 0.460851609706879 experiment 0.547580189799939 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR43 ENSG00000163811 CDS Human protein_coding chr2:29147999 chr2:29148007 synonymous SNV . 0 29 hm5C_associated_SNPs_31739 0 0 1 0 1 WDR43 chr2:29148019 5'GT 29148019 Upstream 13bp
chr7 44806203 44806203 1 + G A PRAD 44806215 + 44806195 44806235 41 CTGCCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCC CTGCCACAAGCGTGATGGGGCCCCCCAGCATGTCTGGAGCC < 41bp 1 0.0818133680417339 1 0.0663761496543884 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806215 chr7:44806203 nonsynonymous SNV 0.984 0 9 hm5C_associated_SNPs_31742 0 0 0 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 60bp
chr7 44806203 44806203 1 + G A PRAD 44806216 + 44806196 44806236 41 TGCCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCG TGCCACAAGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCG < 41bp 1 0.123663097819811 1 0.112489849328995 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806216 chr7:44806203 nonsynonymous SNV 0.984 0 8 hm5C_associated_SNPs_31743 0 0 0 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 60bp
chr7 44806203 44806203 1 + G A PRAD 44806217 + 44806197 44806237 41 GCCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGG GCCACAAGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGG < 41bp 1 0.488973880493434 1 0.119719505310059 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806217 chr7:44806203 nonsynonymous SNV 0.984 0 7 hm5C_associated_SNPs_31744 0 0 0 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 60bp
chr7 44806203 44806203 1 + G A PRAD 44806218 + 44806198 44806238 41 CCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGGG CCACAAGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGGG < 41bp 1 0.136787794116772 1 0.171146035194397 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806218 chr7:44806203 nonsynonymous SNV 0.984 0 6 hm5C_associated_SNPs_31745 0 0 0 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 60bp
chr7 44806203 44806203 1 + G A PRAD 44806219 + 44806199 44806239 41 CACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGGGG CACAAGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGGGG < 41bp 1 0.108165905856085 1 0.444455057382584 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806219 chr7:44806203 nonsynonymous SNV 0.984 0 5 hm5C_associated_SNPs_31746 0 0 0 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 60bp
chr1 16778446 16778446 1 + T C PRAD 16778447 + 16778427 16778467 41 AAACCTCCACCCTGATCCCTCCCCCTGGGGAGCAGTTGGCT AAACCTCCACCCTGATCCCCCCCCCTGGGGAGCAGTTGGCT < 41bp 1 0.131748114090127 1 0.149364858865738 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778447 chr1:16778446 synonymous SNV . 0 20 hm5C_associated_SNPs_31747 0 0 1 0 1 NECAP2 chr1:16778510 5'GT 16778510 Upstream 65bp
chr1 16778446 16778446 1 + T C PRAD 16778448 + 16778428 16778468 41 AACCTCCACCCTGATCCCTCCCCCTGGGGAGCAGTTGGCTG AACCTCCACCCTGATCCCCCCCCCTGGGGAGCAGTTGGCTG < 41bp 1 0.291985023263908 1 0.268131941556931 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778448 chr1:16778446 synonymous SNV . 0 19 hm5C_associated_SNPs_31748 0 0 1 0 1 NECAP2 chr1:16778510 5'GT 16778510 Upstream 65bp
chr1 16778446 16778446 1 + T C PRAD 16778449 + 16778429 16778469 41 ACCTCCACCCTGATCCCTCCCCCTGGGGAGCAGTTGGCTGT ACCTCCACCCTGATCCCCCCCCCTGGGGAGCAGTTGGCTGT < 41bp 1 0.326419621627578 1 0.0917003452777863 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778449 chr1:16778446 synonymous SNV . 0 18 hm5C_associated_SNPs_31749 0 0 1 0 1 NECAP2 chr1:16778510 5'GT 16778510 Upstream 65bp
chr1 16778446 16778446 1 + T C PRAD 16778450 + 16778430 16778470 41 CCTCCACCCTGATCCCTCCCCCTGGGGAGCAGTTGGCTGTG CCTCCACCCTGATCCCCCCCCCTGGGGAGCAGTTGGCTGTG < 41bp 1 0.4928043802457 1 0.719074249267578 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778450 chr1:16778446 synonymous SNV . 0 17 hm5C_associated_SNPs_31750 0 0 1 0 1 NECAP2 chr1:16778510 5'GT 16778510 Upstream 65bp
chr1 3342257 3342257 1 + G A PRAD 3342250 + 3342230 3342270 41 AAGTGCCACCTGTGCAACCGCTGCTTCGGGCAGCAGACCAA AAGTGCCACCTGTGCAACCGCTGCTTCAGGCAGCAGACCAA < 41bp 1 0.302720603243002 1 0.439554035663605 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3342250 chr1:3342257 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_31752 0 0 0 0 1 PRDM16 chr1:3342314 5'GT 3342314 Upstream 58bp
chr1 155028655 155028655 1 + G A READ 155028667 + 155028647 155028687 41 TCACCCTCGAAAACTTCCTCCACTGGCGCAGGGCACATTTG TCACCCTCAAAAACTTCCTCCACTGGCGCAGGGCACATTTG < 41bp 1 0.372677088766781 1 0.318515121936798 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155028667 chr1:155028655 nonsynonymous SNV 0.313 1 9 hm5C_associated_SNPs_31756 0 0 0 0 1 ADAM15 chr1:155028556 3'AG 155028556 Downstream 100bp
chr5 76355533 76355533 1 + T A READ 76355513 + 76355493 76355533 41 GAGCTGGAAAACGTAGGGAGCAGGTTGGAAGTGAAGGAACT GAGCTGGAAAACGTAGGGAGCAGGTTGGAAGTGAAGGAACA < 41bp 1 0.452824849020478 1 0.415601134300232 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76355513 chr5:76355533 synonymous SNV . 0 41 hm5C_associated_SNPs_31757 0 0 1 0 2 AGGF1 chr5:76355441 3'AG 76355441 Downstream 93bp
chr5 76355533 76355533 1 + T A READ 76355513 + 76355493 76355533 41 GAGCTGGAAAACGTAGGGAGCAGGTTGGAAGTGAAGGAACT GAGCTGGAAAACGTAGGGAGCAGGTTGGAAGTGAAGGAACA < 41bp 1 0.452824849020478 1 0.415601134300232 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76355513 chr5:76355533 synonymous SNV . 0 41 hm5C_associated_SNPs_31757 0 0 1 0 2 AGGF1 chr5:76355568 5'GT 76355568 Upstream 36bp
chr3 52245344 52245344 1 + C A READ 52245356 + 52245336 52245376 41 CACGAGTTCTCTGATTGACACCGTACGGTCCTATGCTGCTG CACGAGTTATCTGATTGACACCGTACGGTCCTATGCTGCTG < 41bp 1 0.40897176660063 1 0.162454098463058 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245356 chr3:52245344 nonsynonymous SNV 0.395 1 9 hm5C_associated_SNPs_31759 0 0 0 0 1 ALAS1 chr3:52245299 3'AG 52245299 Downstream 46bp
chr3 52245344 52245344 1 + C A READ 52245357 + 52245337 52245377 41 ACGAGTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGG ACGAGTTATCTGATTGACACCGTACGGTCCTATGCTGCTGG < 41bp 1 0.175657975743615 1 0.21091639995575 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245357 chr3:52245344 nonsynonymous SNV 0.395 1 8 hm5C_associated_SNPs_31760 0 0 0 0 1 ALAS1 chr3:52245299 3'AG 52245299 Downstream 46bp
chr3 52245344 52245344 1 + C A READ 52245361 + 52245341 52245381 41 GTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGGCTTC GTTATCTGATTGACACCGTACGGTCCTATGCTGCTGGCTTC < 41bp 1 0.301576104857945 1 0.400163054466248 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245361 chr3:52245344 nonsynonymous SNV 0.395 1 4 hm5C_associated_SNPs_31761 0 0 0 0 1 ALAS1 chr3:52245299 3'AG 52245299 Downstream 46bp
chr14 103390060 103390060 1 + C T READ 103390064 + 103390044 103390084 41 CCAGCACTGACCCAGGCGGTCTCCAAACTCTGGGTCCCCAA CCAGCACTGACCCAGGTGGTCTCCAAACTCTGGGTCCCCAA < 41bp 1 0.711249890322778 1 0.804961562156677 experiment 0.577500219354445 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control AMN ENSG00000166126 CDS Human protein_coding chr14:103390064 chr14:103390060 nonsynonymous SNV 0.043 4 17 hm5C_associated_SNPs_31762 0 0 1 0 1 AMN chr14:103390048 3'AG 103390048 Downstream 13bp
chr6 34950944 34950944 1 + G A READ 34950926 + 34950906 34950946 41 AAAAGATAACCATGGACTGACTGCCCTAGACACTGTTCGGG AAAAGATAACCATGGACTGACTGCCCTAGACACTGTTCAGG < 41bp 1 0.115705130596063 1 0.187910139560699 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKS1A ENSG00000064999 CDS Human protein_coding chr6:34950926 chr6:34950944 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_31763 0 0 1 0 2 ANKS1A chr6:34950890 3'AG 34950890 Downstream 55bp
chr6 34950944 34950944 1 + G A READ 34950926 + 34950906 34950946 41 AAAAGATAACCATGGACTGACTGCCCTAGACACTGTTCGGG AAAAGATAACCATGGACTGACTGCCCTAGACACTGTTCAGG < 41bp 1 0.115705130596063 1 0.187910139560699 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKS1A ENSG00000064999 CDS Human protein_coding chr6:34950926 chr6:34950944 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_31763 0 0 1 0 2 ANKS1A chr6:34950991 5'GT 34950991 Upstream 48bp
chr3 49720107 49720107 1 + C T READ 49720112 + 49720092 49720132 41 GACCTACAGGGCCTGCGTGGCCCGGAACCCCGTGATCAACA GACCTACAGGGCCTGTGTGGCCCGGAACCCCGTGATCAACA < 41bp 1 0.539547901549432 1 0.102864980697632 experiment 0.920904196901137 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49720112 chr3:49720107 synonymous SNV . 0 16 hm5C_associated_SNPs_31766 0 0 1 0 1 APEH chr3:49720169 5'GT 49720169 Upstream 63bp
chr11 73073743 73073743 1 + C A READ 73073732 + 73073712 73073752 41 TTCGCCCAGCCCCTCGGGGACGCTGCAGAGCCAGGCCAGCC TTCGCCCAGCCCCTCGGGGACGCTGCAGAGCAAGGCCAGCC < 41bp 1 0.179600237425403 1 0.109502643346786 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73073732 chr11:73073743 nonsynonymous SNV 0.998 4 32 hm5C_associated_SNPs_31767 0 0 0 0 1 ARHGEF17 chr11:73073779 5'GT 73073779 Upstream 37bp
chr9 133327654 133327654 1 + C T READ 133327657 + 133327637 133327677 41 GTTCTGGCCTACAGTGGCGGCCTGGACACCTCGTGCATCCT GTTCTGGCCTACAGTGGTGGCCTGGACACCTCGTGCATCCT < 41bp 1 0.176008735212178 1 0.154699176549911 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ASS1 ENSG00000130707 CDS Human protein_coding chr9:133327657 chr9:133327654 synonymous SNV . 0 18 hm5C_associated_SNPs_31768 0 0 1 0 2 ASS1 chr9:133327611 3'AG 133327611 Downstream 44bp
chr9 133327654 133327654 1 + C T READ 133327657 + 133327637 133327677 41 GTTCTGGCCTACAGTGGCGGCCTGGACACCTCGTGCATCCT GTTCTGGCCTACAGTGGTGGCCTGGACACCTCGTGCATCCT < 41bp 1 0.176008735212178 1 0.154699176549911 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ASS1 ENSG00000130707 CDS Human protein_coding chr9:133327657 chr9:133327654 synonymous SNV . 0 18 hm5C_associated_SNPs_31768 0 0 1 0 2 ASS1 chr9:133327720 5'GT 133327720 Upstream 67bp
chr7 149576436 149576436 1 + C T READ 149576429 + 149576409 149576449 41 TGATGTGCTTTTCAGGTGCCCAGCTCTCGGAATGACTGTGG TGATGTGCTTTTCAGGTGCCCAGCTCTTGGAATGACTGTGG < 41bp 1 0.399369684962298 1 0.495193004608154 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V0E2 ENSG00000171130 CDS Human protein_coding chr7:149576429 chr7:149576436 synonymous SNV . 0 28 hm5C_associated_SNPs_31769 0 0 1 0 1 ATP6V0E2 chr7:149576424 3'AG 149576424 Downstream 13bp
chr1 154303960 154303960 1 + C A READ 154303952 + 154303932 154303972 41 AGCGATAACCAGGTGAATAACCGCCAGTCTCAGGTGCTGAT AGCGATAACCAGGTGAATAACCGCCAGTATCAGGTGCTGAT < 41bp 1 0.167477871107275 1 0.0630052983760834 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154303952 chr1:154303960 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_31771 0 0 1 0 2 ATP8B2 chr1:154303920 3'AG 154303920 Downstream 41bp
chr1 154303960 154303960 1 + C A READ 154303952 + 154303932 154303972 41 AGCGATAACCAGGTGAATAACCGCCAGTCTCAGGTGCTGAT AGCGATAACCAGGTGAATAACCGCCAGTATCAGGTGCTGAT < 41bp 1 0.167477871107275 1 0.0630052983760834 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154303952 chr1:154303960 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_31771 0 0 1 0 2 ATP8B2 chr1:154303981 5'GT 154303981 Upstream 22bp
chr7 69583190 69583190 1 + C T READ 69583186 + 69583166 69583206 41 AGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA AGTGGAGAATCCAAGGGCTTCCACTGGAGCAGCTCTCGGGA < 41bp 1 0.13812158654787 1 0.211949199438095 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69583186 chr7:69583190 nonsynonymous SNV 0.982 4 25 hm5C_associated_SNPs_31772 0 0 0 0 2 AUTS2 chr7:69583118 3'AG 69583118 Downstream 73bp
chr7 69583190 69583190 1 + C T READ 69583186 + 69583166 69583206 41 AGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA AGTGGAGAATCCAAGGGCTTCCACTGGAGCAGCTCTCGGGA < 41bp 1 0.13812158654787 1 0.211949199438095 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69583186 chr7:69583190 nonsynonymous SNV 0.982 4 25 hm5C_associated_SNPs_31772 0 0 0 0 2 AUTS2 chr7:69583219 5'GT 69583219 Upstream 30bp
chr7 69599557 69599557 1 + C T READ 69599551 + 69599531 69599571 41 CCTTCCAGCTTGGGAACAGGCTACTTCGTAAGTCTATCTCA CCTTCCAGCTTGGGAACAGGCTACTTTGTAAGTCTATCTCA < 41bp 1 0.233873789218784 1 0.0508181154727936 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69599551 chr7:69599557 synonymous SNV . 0 27 hm5C_associated_SNPs_31773 0 0 0 0 1 AUTS2 chr7:69599557 5'GT 69599557 Upstream 1bp
chr2 32696179 32696179 1 + G T READ 32696172 + 32696152 32696192 41 TGTTGAAGATGAAGCAGCAGCTGCAAAGAAACCTTTGAATG TGTTGAAGATGAAGCAGCAGCTGCAAATAAACCTTTGAATG < 41bp 1 0.409011395413808 1 0.409297108650208 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32696172 chr2:32696179 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_31775 0 0 0 0 2 BIRC6 chr2:32696082 3'AG 32696082 Downstream 98bp
chr2 32696179 32696179 1 + G T READ 32696172 + 32696152 32696192 41 TGTTGAAGATGAAGCAGCAGCTGCAAAGAAACCTTTGAATG TGTTGAAGATGAAGCAGCAGCTGCAAATAAACCTTTGAATG < 41bp 1 0.409011395413808 1 0.409297108650208 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32696172 chr2:32696179 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_31775 0 0 0 0 2 BIRC6 chr2:32696192 5'GT 32696192 Upstream 14bp
chr2 32696179 32696179 1 + G T READ 32696175 + 32696155 32696195 41 TGAAGATGAAGCAGCAGCTGCAAAGAAACCTTTGAATGGTA TGAAGATGAAGCAGCAGCTGCAAATAAACCTTTGAATGGTA < 41bp 1 0.042009283951004 1 0.259508907794952 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32696175 chr2:32696179 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_31776 0 0 0 0 2 BIRC6 chr2:32696082 3'AG 32696082 Downstream 98bp
chr2 32696179 32696179 1 + G T READ 32696175 + 32696155 32696195 41 TGAAGATGAAGCAGCAGCTGCAAAGAAACCTTTGAATGGTA TGAAGATGAAGCAGCAGCTGCAAATAAACCTTTGAATGGTA < 41bp 1 0.042009283951004 1 0.259508907794952 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32696175 chr2:32696179 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_31776 0 0 0 0 2 BIRC6 chr2:32696192 5'GT 32696192 Upstream 14bp
chr2 37458878 37458878 1 + G A READ 37458880 + 37458860 37458900 41 GCTGAGGTCAGGTTTGGGGCCGTTGTGTGCCGTGGCGCGCG GCTGAGGTCAGGTTTGGGACCGTTGTGTGCCGTGGCGCGCG < 41bp 1 0.658293063146183 1 0.309704899787903 experiment 0.683413873707634 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37458880 chr2:37458878 synonymous SNV . 0 19 hm5C_associated_SNPs_31779 0 0 1 0 1 NDUFAF7 chr2:37458903 5'GT 37458903 Upstream 26bp
chr19 4268649 4268649 1 + C T READ 4268640 + 4268620 4268660 41 TGACGCCTGGCGCGTCCTCCCTGAGCCAACTGGGTGCATAC TGACGCCTGGCGCGTCCTCCCTGAGCCAATTGGGTGCATAC < 41bp 1 0.72600166576464 1 0.541285634040833 experiment 0.54799666847072 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC94 ENSG00000105248 CDS Human protein_coding chr19:4268640 chr19:4268649 synonymous SNV . 0 30 hm5C_associated_SNPs_31780 0 0 1 0 1 CCDC94 chr19:4268581 3'AG 4268581 Downstream 69bp
chr22 19492944 19492944 1 + G A READ 19492963 + 19492943 19492983 41 CGGAACGAGGATGAGGAGAACACACTCTCCGTGGACTGCAC CAGAACGAGGATGAGGAGAACACACTCTCCGTGGACTGCAC < 41bp 1 0.361729134507725 1 0.092549592256546 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19492963 chr22:19492944 nonsynonymous SNV 0.346 1 2 hm5C_associated_SNPs_31782 0 0 1 0 2 CDC45 chr22:19492885 3'AG 19492885 Downstream 60bp
chr22 19492944 19492944 1 + G A READ 19492963 + 19492943 19492983 41 CGGAACGAGGATGAGGAGAACACACTCTCCGTGGACTGCAC CAGAACGAGGATGAGGAGAACACACTCTCCGTGGACTGCAC < 41bp 1 0.361729134507725 1 0.092549592256546 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19492963 chr22:19492944 nonsynonymous SNV 0.346 1 2 hm5C_associated_SNPs_31782 0 0 1 0 2 CDC45 chr22:19493004 5'GT 19493004 Upstream 61bp
chr13 26956965 26956965 1 + T G READ 26956984 + 26956964 26957004 41 TTTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAA TGTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAA < 41bp 1 0.230061223968477 1 0.115547716617584 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CDK8 ENSG00000132964 CDS Human protein_coding chr13:26956984 chr13:26956965 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_31783 0 0 1 0 2 CDK8 chr13:26956951 3'AG 26956951 Downstream 15bp
chr13 26956965 26956965 1 + T G READ 26956984 + 26956964 26957004 41 TTTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAA TGTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAA < 41bp 1 0.230061223968477 1 0.115547716617584 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CDK8 ENSG00000132964 CDS Human protein_coding chr13:26956984 chr13:26956965 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_31783 0 0 1 0 2 CDK8 chr13:26957008 5'GT 26957008 Upstream 44bp
chr1 22333381 22333381 1 + G A READ 22333371 + 22333351 22333391 41 GACTGTTCCCTCCTCCCCAGCAATGACATCGCCCTCATCAA GACTGTTCCCTCCTCCCCAGCAATGACATCACCCTCATCAA < 41bp 1 0.264576771704388 1 0.0496775805950165 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333371 chr1:22333381 nonsynonymous SNV 0.999 2 31 hm5C_associated_SNPs_31784 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 11bp
chr1 22333381 22333381 1 + G A READ 22333377 + 22333357 22333397 41 TCCCTCCTCCCCAGCAATGACATCGCCCTCATCAAGCTCTC TCCCTCCTCCCCAGCAATGACATCACCCTCATCAAGCTCTC < 41bp 1 0.454109988294778 1 0.131106585264206 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333377 chr1:22333381 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_31785 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 11bp
chr1 22333381 22333381 1 + G A READ 22333380 + 22333360 22333400 41 CTCCTCCCCAGCAATGACATCGCCCTCATCAAGCTCTCACG CTCCTCCCCAGCAATGACATCACCCTCATCAAGCTCTCACG < 41bp 1 0.258353623351926 1 0.0447815656661987 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333380 chr1:22333381 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_31786 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 11bp
chr1 22333381 22333381 1 + G A READ 22333382 + 22333362 22333402 41 CCTCCCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCA CCTCCCCAGCAATGACATCACCCTCATCAAGCTCTCACGCA < 41bp 1 0.148172958129553 1 0.0207001566886902 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333382 chr1:22333381 nonsynonymous SNV 0.999 2 20 hm5C_associated_SNPs_31787 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 11bp
chr1 22333381 22333381 1 + G A READ 22333383 + 22333363 22333403 41 CTCCCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCAG CTCCCCAGCAATGACATCACCCTCATCAAGCTCTCACGCAG < 41bp 1 0.347114551792012 1 0.0163255631923676 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333383 chr1:22333381 nonsynonymous SNV 0.999 2 19 hm5C_associated_SNPs_31788 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 11bp
chr1 22333381 22333381 1 + G A READ 22333384 + 22333364 22333404 41 TCCCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCAGC TCCCCAGCAATGACATCACCCTCATCAAGCTCTCACGCAGC < 41bp 1 0.308627206156791 1 0.0524317622184753 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333384 chr1:22333381 nonsynonymous SNV 0.999 2 18 hm5C_associated_SNPs_31789 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 11bp
chr1 22333381 22333381 1 + G A READ 22333386 + 22333366 22333406 41 CCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCAGCGC CCCAGCAATGACATCACCCTCATCAAGCTCTCACGCAGCGC < 41bp 1 0.531801209815494 1 0.336677432060242 experiment 0.936397580369013 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333386 chr1:22333381 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_31790 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 11bp
chr1 22333381 22333381 1 + G A READ 22333389 + 22333369 22333409 41 AGCAATGACATCGCCCTCATCAAGCTCTCACGCAGCGCCCA AGCAATGACATCACCCTCATCAAGCTCTCACGCAGCGCCCA < 41bp 1 0.520397707425976 1 0.838311731815338 experiment 0.959204585148048 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333389 chr1:22333381 nonsynonymous SNV 0.999 2 13 hm5C_associated_SNPs_31791 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 11bp
chr1 22333381 22333381 1 + G A READ 22333393 + 22333373 22333413 41 ATGACATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTG ATGACATCACCCTCATCAAGCTCTCACGCAGCGCCCAGCTG < 41bp 1 0.183938106671131 1 0.0278968513011932 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333393 chr1:22333381 nonsynonymous SNV 0.999 2 9 hm5C_associated_SNPs_31792 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 11bp
chr1 22333381 22333381 1 + G A READ 22333395 + 22333375 22333415 41 GACATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGG GACATCACCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGG < 41bp 1 0.270293193852155 1 0.149439424276352 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333395 chr1:22333381 nonsynonymous SNV 0.999 2 7 hm5C_associated_SNPs_31793 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 11bp
chr1 22333381 22333381 1 + G A READ 22333397 + 22333377 22333417 41 CATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAG CATCACCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAG < 41bp 1 0.57071844130392 1 0.254429697990417 experiment 0.858563117392159 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333397 chr1:22333381 nonsynonymous SNV 0.999 2 5 hm5C_associated_SNPs_31794 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 11bp
chr1 22333381 22333381 1 + G A READ 22333399 + 22333379 22333419 41 TCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGAT TCACCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGAT < 41bp 1 0.589361342700441 1 0.180713444948196 experiment 0.821277314599118 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333399 chr1:22333381 nonsynonymous SNV 0.999 2 3 hm5C_associated_SNPs_31795 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 11bp
chr1 22333381 22333381 1 + G A READ 22333401 + 22333381 22333421 41 GCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGC ACCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGC < 41bp 1 0.710416519488028 1 0.142717629671097 experiment 0.579166961023944 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333401 chr1:22333381 nonsynonymous SNV 0.999 2 1 hm5C_associated_SNPs_31796 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 11bp
chr1 214794274 214794274 1 + A C READ 214794259 + 214794239 214794279 41 ACAATTCTAGCAGTCCTCATCTTTTGGATCAATTAAAAGCG ACAATTCTAGCAGTCCTCATCTTTTGGATCAATTACAAGCG < 41bp 1 0.0489731303371976 1 0.164264231920242 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CENPF ENSG00000117724 CDS Human protein_coding chr1:214794259 chr1:214794274 nonsynonymous SNV 0.913 3 36 hm5C_associated_SNPs_31797 0 0 1 0 1 CENPF chr1:214794289 5'GT 214794289 Upstream 16bp
chr15 41554986 41554986 1 + G A READ 41554985 + 41554965 41555005 41 TAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCGC TAAACTTCCGTGGATTCATGCAAACTTTGGCTCATTTCCGC < 41bp 1 0.227300285517806 1 0.243649303913116 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHP1 ENSG00000187446 CDS Human protein_coding chr15:41554985 chr15:41554986 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_31798 0 0 1 0 2 CHP1 chr15:41554954 3'AG 41554954 Downstream 33bp
chr15 41554986 41554986 1 + G A READ 41554985 + 41554965 41555005 41 TAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCGC TAAACTTCCGTGGATTCATGCAAACTTTGGCTCATTTCCGC < 41bp 1 0.227300285517806 1 0.243649303913116 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHP1 ENSG00000187446 CDS Human protein_coding chr15:41554985 chr15:41554986 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_31798 0 0 1 0 2 CHP1 chr15:41555081 5'GT 41555081 Upstream 96bp
chr16 11066825 11066825 1 + G A READ 11066834 + 11066814 11066854 41 GCACTACATCCGAGATAAAACTGCTGTTCCTTACTTCTCCA GCACTACATCCAAGATAAAACTGCTGTTCCTTACTTCTCCA < 41bp 1 0.328641712601702 1 0.0430912375450134 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11066834 chr16:11066825 nonsynonymous SNV 0.999 4 12 hm5C_associated_SNPs_31801 0 0 1 0 2 CLEC16A chr16:11066795 3'AG 11066795 Downstream 31bp
chr16 11066825 11066825 1 + G A READ 11066834 + 11066814 11066854 41 GCACTACATCCGAGATAAAACTGCTGTTCCTTACTTCTCCA GCACTACATCCAAGATAAAACTGCTGTTCCTTACTTCTCCA < 41bp 1 0.328641712601702 1 0.0430912375450134 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11066834 chr16:11066825 nonsynonymous SNV 0.999 4 12 hm5C_associated_SNPs_31801 0 0 1 0 2 CLEC16A chr16:11066918 5'GT 11066918 Upstream 94bp
chr15 74918211 74918211 1 + G A READ 74918204 + 74918184 74918224 41 ACATGTGCATCGCCTTTGAGCTCCTGGGCAAGAACACCTTT ACATGTGCATCGCCTTTGAGCTCCTGGACAAGAACACCTTT < 41bp 1 0.418174795071676 1 0.193437725305557 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLK3 ENSG00000179335 CDS Human protein_coding chr15:74918204 chr15:74918211 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_31802 0 0 1 0 2 CLK3 chr15:74918143 3'AG 74918143 Downstream 69bp
chr15 74918211 74918211 1 + G A READ 74918204 + 74918184 74918224 41 ACATGTGCATCGCCTTTGAGCTCCTGGGCAAGAACACCTTT ACATGTGCATCGCCTTTGAGCTCCTGGACAAGAACACCTTT < 41bp 1 0.418174795071676 1 0.193437725305557 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLK3 ENSG00000179335 CDS Human protein_coding chr15:74918204 chr15:74918211 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_31802 0 0 1 0 2 CLK3 chr15:74918309 5'GT 74918309 Upstream 99bp
chr17 57725607 57725607 1 + C T READ 57725620 + 57725600 57725640 41 GCAAAATCGTGTGGTGGGAGCTATGCAGCTATATTCTGTAG GCAAAATTGTGTGGTGGGAGCTATGCAGCTATATTCTGTAG < 41bp 1 0.241992500505467 1 0.0978605151176453 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57725620 chr17:57725607 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_31803 0 0 1 0 1 CLTC chr17:57725601 3'AG 57725601 Downstream 7bp
chr21 46931120 46931120 1 + C T READ 46931104 + 46931084 46931124 41 GCCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC GCCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGATGTCC < 41bp 1 0.0463828499835534 1 0.119751125574112 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931104 chr21:46931120 synonymous SNV . 0 37 hm5C_associated_SNPs_31804 0 0 1 0 2 COL18A1 chr21:46931025 3'AG 46931025 Downstream 96bp
chr21 46931120 46931120 1 + C T READ 46931104 + 46931084 46931124 41 GCCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC GCCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGATGTCC < 41bp 1 0.0463828499835534 1 0.119751125574112 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931104 chr21:46931120 synonymous SNV . 0 37 hm5C_associated_SNPs_31804 0 0 1 0 2 COL18A1 chr21:46931140 5'GT 46931140 Upstream 21bp
chr21 46931120 46931120 1 + C T READ 46931105 + 46931085 46931125 41 CCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT CCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGATGTCCT < 41bp 1 0.0615491131117629 1 0.0526973307132721 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931105 chr21:46931120 synonymous SNV . 0 36 hm5C_associated_SNPs_31805 0 0 1 0 2 COL18A1 chr21:46931025 3'AG 46931025 Downstream 96bp
chr21 46931120 46931120 1 + C T READ 46931105 + 46931085 46931125 41 CCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT CCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGATGTCCT < 41bp 1 0.0615491131117629 1 0.0526973307132721 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931105 chr21:46931120 synonymous SNV . 0 36 hm5C_associated_SNPs_31805 0 0 1 0 2 COL18A1 chr21:46931140 5'GT 46931140 Upstream 21bp
chr16 57144699 57144699 1 + C T READ 57144680 + 57144660 57144700 41 CCACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCCC CCACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCTC < 41bp 1 0.611837527392606 1 0.239770889282227 experiment 0.776324945214789 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144680 chr16:57144699 synonymous SNV . 0 40 hm5C_associated_SNPs_31806 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 80bp
chr16 57144699 57144699 1 + C T READ 57144681 + 57144661 57144701 41 CACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCCCC CACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCTCC < 41bp 1 0.230897613513971 1 0.251666396856308 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144681 chr16:57144699 synonymous SNV . 0 39 hm5C_associated_SNPs_31807 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 80bp
chr16 57144699 57144699 1 + C T READ 57144682 + 57144662 57144702 41 ACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCCCCC ACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCTCCC < 41bp 1 0.334573275030431 1 0.453843355178833 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144682 chr16:57144699 synonymous SNV . 0 38 hm5C_associated_SNPs_31808 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 80bp
chr16 57144699 57144699 1 + C T READ 57144695 + 57144675 57144715 41 GGGTGCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGT GGGTGCCCCAGCAGCGGGGGCAGCTCCCATGGGCCCCCAGT < 41bp 1 0.297171389364345 1 0.412866562604904 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144695 chr16:57144699 synonymous SNV . 0 25 hm5C_associated_SNPs_31809 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 80bp
chr16 57144699 57144699 1 + C T READ 57144698 + 57144678 57144718 41 TGCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATT TGCCCCAGCAGCGGGGGCAGCTCCCATGGGCCCCCAGTATT < 41bp 1 0.420223419706179 1 0.746267557144165 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144698 chr16:57144699 synonymous SNV . 0 22 hm5C_associated_SNPs_31810 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 80bp
chr16 57144699 57144699 1 + C T READ 57144700 + 57144680 57144720 41 CCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATTGC CCCCAGCAGCGGGGGCAGCTCCCATGGGCCCCCAGTATTGC < 41bp 1 0.392705522940168 1 0.19904625415802 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144700 chr16:57144699 synonymous SNV . 0 20 hm5C_associated_SNPs_31811 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 80bp
chr16 57144699 57144699 1 + C T READ 57144701 + 57144681 57144721 41 CCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATTGCG CCCAGCAGCGGGGGCAGCTCCCATGGGCCCCCAGTATTGCG < 41bp 1 0.265443588429152 1 0.301990866661072 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144701 chr16:57144699 synonymous SNV . 0 19 hm5C_associated_SNPs_31812 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 80bp
chr16 89645283 89645283 1 + C T READ 89645265 + 89645245 89645285 41 CTGGGTTACGGCCTCCACAGCCAGCCCAAAAGTGGCTTCTG CTGGGTTACGGCCTCCACAGCCAGCCCAAAAGTGGCTTTTG < 41bp 1 0.0740954689089116 1 0.800839006900787 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89645265 chr16:89645283 synonymous SNV . 0 39 hm5C_associated_SNPs_31813 0 0 1 0 1 CPNE7 chr16:89645265 3'AG 89645265 Downstream 19bp
chr2 211502539 211502539 1 + A C READ 211502553 + 211502533 211502573 41 GGTTAAAGAAAAACATCCACCCTTGGGTTAAACAGGTAAAG GGTTAACGAAAAACATCCACCCTTGGGTTAAACAGGTAAAG < 41bp 1 0.0405153642583918 1 0.237434804439545 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211502553 chr2:211502539 nonsynonymous SNV 0.999 3 7 hm5C_associated_SNPs_31814 0 0 0 0 1 CPS1 chr2:211502567 5'GT 211502567 Upstream 29bp
chr7 87005030 87005030 1 + C T READ 87005024 + 87005004 87005044 41 CAGCATTAACTAGTGAGGAGCGAACTCGATGGGCTAAGGTT CAGCATTAACTAGTGAGGAGCGAACTTGATGGGCTAAGGTT < 41bp 1 0.20045284663075 1 0.430434674024582 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CROT ENSG00000005469 CDS Human protein_coding chr7:87005024 chr7:87005030 stopgain 0.992 0 27 hm5C_associated_SNPs_31815 0 0 1 0 2 CROT chr7:87004948 3'AG 87004948 Downstream 83bp
chr7 87005030 87005030 1 + C T READ 87005024 + 87005004 87005044 41 CAGCATTAACTAGTGAGGAGCGAACTCGATGGGCTAAGGTT CAGCATTAACTAGTGAGGAGCGAACTTGATGGGCTAAGGTT < 41bp 1 0.20045284663075 1 0.430434674024582 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CROT ENSG00000005469 CDS Human protein_coding chr7:87005024 chr7:87005030 stopgain 0.992 0 27 hm5C_associated_SNPs_31815 0 0 1 0 2 CROT chr7:87005041 5'GT 87005041 Upstream 12bp
chr11 126213259 126213259 1 + G A READ 126213246 + 126213226 126213266 41 ATCTGCCATCGCCGGGGCATCAGATCCCTACGCGACCTTAC ATCTGCCATCGCCGGGGCATCAGATCCCTACGCAACCTTAC < 41bp 1 0.405461741140563 1 0.52761447429657 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DCPS ENSG00000110063 CDS Human protein_coding chr11:126213246 chr11:126213259 nonsynonymous SNV 0.111 5 34 hm5C_associated_SNPs_31816 0 0 1 0 2 DCPS chr11:126213202 3'AG 126213202 Downstream 58bp
chr11 126213259 126213259 1 + G A READ 126213246 + 126213226 126213266 41 ATCTGCCATCGCCGGGGCATCAGATCCCTACGCGACCTTAC ATCTGCCATCGCCGGGGCATCAGATCCCTACGCAACCTTAC < 41bp 1 0.405461741140563 1 0.52761447429657 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DCPS ENSG00000110063 CDS Human protein_coding chr11:126213246 chr11:126213259 nonsynonymous SNV 0.111 5 34 hm5C_associated_SNPs_31816 0 0 1 0 2 DCPS chr11:126213312 5'GT 126213312 Upstream 54bp
chr16 90027425 90027425 1 + G A READ 90027406 + 90027386 90027426 41 CCCTGTGTGAGCTCCAAAGTCAGCCACCAAGCTGAATACGA CCCTGTGTGAGCTCCAAAGTCAGCCACCAAGCTGAATACAA < 41bp 1 0.484401292652809 1 0.261037409305573 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90027406 chr16:90027425 nonsynonymous SNV 0.989 2 40 hm5C_associated_SNPs_31819 0 0 1 0 1 DEF8 chr16:90027503 5'GT 90027503 Upstream 79bp
chr10 12162812 12162812 1 + G T READ 12162801 + 12162781 12162821 41 TATAGCTCCGTCTGGTGGGCCGGCCCCCTTTGCCAGTACCC TATAGCTCCGTCTGGTGGGCCGGCCCCCTTTTCCAGTACCC < 41bp 1 0.162062570890349 1 0.650351285934448 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12162801 chr10:12162812 nonsynonymous SNV 0.956 2 32 hm5C_associated_SNPs_31820 0 0 0 0 1 DHTKD1 chr10:12162786 3'AG 12162786 Downstream 27bp
chr7 21934379 21934379 1 + C T READ 21934397 + 21934377 21934417 41 TTCGGGAAATACGTATATCACTTGAACAACTGGACCTTAGT TTTGGGAAATACGTATATCACTTGAACAACTGGACCTTAGT < 41bp 1 0.230700567763426 1 0.43570750951767 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21934397 chr7:21934379 nonsynonymous SNV 0.997 2 3 hm5C_associated_SNPs_31821 0 0 0 0 1 DNAH11 chr7:21934423 5'GT 21934423 Upstream 45bp
chr19 10940849 10940849 1 + C T READ 10940869 + 10940849 10940889 41 CGGCCCCCAGCAGTGAGGGGCCCCACTCCAGGGCCCCCCCT TGGCCCCCAGCAGTGAGGGGCCCCACTCCAGGGCCCCCCCT < 41bp 1 0.235238340519525 1 0.085306316614151 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940869 chr19:10940849 nonsynonymous SNV 0.113 4 1 hm5C_associated_SNPs_31822 0 0 1 0 1 DNM2 chr19:10940803 3'AG 10940803 Downstream 47bp
chr10 129141963 129141963 1 + G T READ 129141945 + 129141925 129141965 41 TTTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCA TTTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTTCA < 41bp 1 0.0809230764601479 1 0.0471609830856323 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141945 chr10:129141963 synonymous SNV . 0 39 hm5C_associated_SNPs_31823 0 0 0 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 54bp
chr10 129141963 129141963 1 + G T READ 129141945 + 129141925 129141965 41 TTTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCA TTTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTTCA < 41bp 1 0.0809230764601479 1 0.0471609830856323 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141945 chr10:129141963 synonymous SNV . 0 39 hm5C_associated_SNPs_31823 0 0 0 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 48bp
chr10 129141963 129141963 1 + G T READ 129141946 + 129141926 129141966 41 TTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCAA TTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTTCAA < 41bp 1 0.0666119152808957 1 0.0627136528491974 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141946 chr10:129141963 synonymous SNV . 0 38 hm5C_associated_SNPs_31824 0 0 0 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 54bp
chr10 129141963 129141963 1 + G T READ 129141946 + 129141926 129141966 41 TTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCAA TTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTTCAA < 41bp 1 0.0666119152808957 1 0.0627136528491974 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141946 chr10:129141963 synonymous SNV . 0 38 hm5C_associated_SNPs_31824 0 0 0 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 48bp
chr10 129141963 129141963 1 + G T READ 129141950 + 129141930 129141970 41 CCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCAACTGG CCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTTCAACTGG < 41bp 1 0.542450114685337 1 0.860026240348816 experiment 0.915099770629326 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141950 chr10:129141963 synonymous SNV . 0 34 hm5C_associated_SNPs_31825 0 0 0 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 54bp
chr10 129141963 129141963 1 + G T READ 129141950 + 129141930 129141970 41 CCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCAACTGG CCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTTCAACTGG < 41bp 1 0.542450114685337 1 0.860026240348816 experiment 0.915099770629326 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141950 chr10:129141963 synonymous SNV . 0 34 hm5C_associated_SNPs_31825 0 0 0 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 48bp
chr10 129141963 129141963 1 + G T READ 129141960 + 129141940 129141980 41 GCTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTC GCTTTCCTTACTCAAGAGTCCCTTCAACTGGAGAATTTTTC < 41bp 1 0.00274663598207636 1 0.0373263359069824 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141960 chr10:129141963 synonymous SNV . 0 24 hm5C_associated_SNPs_31826 0 0 0 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 54bp
chr10 129141963 129141963 1 + G T READ 129141960 + 129141940 129141980 41 GCTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTC GCTTTCCTTACTCAAGAGTCCCTTCAACTGGAGAATTTTTC < 41bp 1 0.00274663598207636 1 0.0373263359069824 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141960 chr10:129141963 synonymous SNV . 0 24 hm5C_associated_SNPs_31826 0 0 0 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 48bp
chr10 129141963 129141963 1 + G T READ 129141961 + 129141941 129141981 41 CTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCA CTTTCCTTACTCAAGAGTCCCTTCAACTGGAGAATTTTTCA < 41bp 1 0.0795746614713031 1 0.164921462535858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141961 chr10:129141963 synonymous SNV . 0 23 hm5C_associated_SNPs_31827 0 0 0 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 54bp
chr10 129141963 129141963 1 + G T READ 129141961 + 129141941 129141981 41 CTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCA CTTTCCTTACTCAAGAGTCCCTTCAACTGGAGAATTTTTCA < 41bp 1 0.0795746614713031 1 0.164921462535858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141961 chr10:129141963 synonymous SNV . 0 23 hm5C_associated_SNPs_31827 0 0 0 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 48bp
chr10 129141963 129141963 1 + G T READ 129141964 + 129141944 129141984 41 TCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGT TCCTTACTCAAGAGTCCCTTCAACTGGAGAATTTTTCAAGT < 41bp 1 0.133512327404877 1 0.480309098958969 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141964 chr10:129141963 synonymous SNV . 0 20 hm5C_associated_SNPs_31828 0 0 0 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 54bp
chr10 129141963 129141963 1 + G T READ 129141964 + 129141944 129141984 41 TCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGT TCCTTACTCAAGAGTCCCTTCAACTGGAGAATTTTTCAAGT < 41bp 1 0.133512327404877 1 0.480309098958969 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141964 chr10:129141963 synonymous SNV . 0 20 hm5C_associated_SNPs_31828 0 0 0 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 48bp
chr10 129141963 129141963 1 + G T READ 129141967 + 129141947 129141987 41 TTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGTGCC TTACTCAAGAGTCCCTTCAACTGGAGAATTTTTCAAGTGCC < 41bp 1 0.557196506304086 1 0.790382146835327 experiment 0.885606987391827 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141967 chr10:129141963 synonymous SNV . 0 17 hm5C_associated_SNPs_31829 0 0 0 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 54bp
chr10 129141963 129141963 1 + G T READ 129141967 + 129141947 129141987 41 TTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGTGCC TTACTCAAGAGTCCCTTCAACTGGAGAATTTTTCAAGTGCC < 41bp 1 0.557196506304086 1 0.790382146835327 experiment 0.885606987391827 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141967 chr10:129141963 synonymous SNV . 0 17 hm5C_associated_SNPs_31829 0 0 0 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 48bp
chr10 129141963 129141963 1 + G T READ 129141980 + 129141960 129142000 41 CCTGCAACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAA CCTTCAACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAA < 41bp 1 0.347519658390161 1 0.932257950305939 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141980 chr10:129141963 synonymous SNV . 0 4 hm5C_associated_SNPs_31830 0 0 0 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 54bp
chr10 129141963 129141963 1 + G T READ 129141980 + 129141960 129142000 41 CCTGCAACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAA CCTTCAACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAA < 41bp 1 0.347519658390161 1 0.932257950305939 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141980 chr10:129141963 synonymous SNV . 0 4 hm5C_associated_SNPs_31830 0 0 0 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 48bp
chr3 108353748 108353748 1 + T C READ 108353763 + 108353743 108353783 41 AAAGTTGCTGTGTTTATTTCCATAAAATTTGCTGGAAAAAG AAAGTCGCTGTGTTTATTTCCATAAAATTTGCTGGAAAAAG < 41bp 1 0.158257597675041 1 0.48019927740097 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108353763 chr3:108353748 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_31831 0 0 0 0 1 DZIP3 chr3:108353819 5'GT 108353819 Upstream 72bp
chr3 183854482 183854482 1 + T C READ 183854500 + 183854480 183854520 41 TGTCTTTTGTTGCTGGAAAGCTGCTCAAATCAAAGAACATT TGCCTTTTGTTGCTGGAAAGCTGCTCAAATCAAAGAACATT < 41bp 1 0.313164752530989 1 0.250716209411621 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183854500 chr3:183854482 nonsynonymous SNV 0.999 4 3 hm5C_associated_SNPs_31832 0 0 1 0 2 EIF2B5 chr3:183854400 3'AG 183854400 Downstream 83bp
chr3 183854482 183854482 1 + T C READ 183854500 + 183854480 183854520 41 TGTCTTTTGTTGCTGGAAAGCTGCTCAAATCAAAGAACATT TGCCTTTTGTTGCTGGAAAGCTGCTCAAATCAAAGAACATT < 41bp 1 0.313164752530989 1 0.250716209411621 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183854500 chr3:183854482 nonsynonymous SNV 0.999 4 3 hm5C_associated_SNPs_31832 0 0 1 0 2 EIF2B5 chr3:183854524 5'GT 183854524 Upstream 43bp
chr2 233428977 233428977 1 + T G READ 233428984 + 233428964 233429004 41 AGTTCTGGAGGTTTTATAGCCACATGGTACGTCCTGGGGAC AGTTCTGGAGGTTGTATAGCCACATGGTACGTCCTGGGGAC < 41bp 1 0.775621199692074 1 0.739146709442139 experiment 0.448757600615853 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control EIF4E2 ENSG00000135930 CDS Human protein_coding chr2:233428984 chr2:233428977 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_31833 0 0 1 0 2 EIF4E2 chr2:233428957 3'AG 233428957 Downstream 21bp
chr2 233428977 233428977 1 + T G READ 233428984 + 233428964 233429004 41 AGTTCTGGAGGTTTTATAGCCACATGGTACGTCCTGGGGAC AGTTCTGGAGGTTGTATAGCCACATGGTACGTCCTGGGGAC < 41bp 1 0.775621199692074 1 0.739146709442139 experiment 0.448757600615853 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control EIF4E2 ENSG00000135930 CDS Human protein_coding chr2:233428984 chr2:233428977 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_31833 0 0 1 0 2 EIF4E2 chr2:233429061 5'GT 233429061 Upstream 85bp
chr14 103802222 103802222 1 + G A READ 103802231 + 103802211 103802251 41 TCAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATG TCAACCGCAGCATGTCAGACCAGTTCTATCGCTACAAGATG < 41bp 1 0.154950045926991 1 0.130377352237701 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103802231 chr14:103802222 nonsynonymous SNV 0.999 4 12 hm5C_associated_SNPs_31834 0 0 1 0 1 EIF5 chr14:103802269 5'GT 103802269 Upstream 48bp
chr2 85598268 85598268 1 + C T READ 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTTGGG < 41bp 1 0.686964187120862 1 0.712544083595276 experiment 0.626071625758277 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598268 synonymous SNV . 0 38 hm5C_associated_SNPs_31835 0 0 1 0 1 ELMOD3 chr2:85598209 3'AG 85598209 Downstream 60bp
chr17 4859430 4859430 1 + G A READ 4859423 + 4859403 4859443 41 CAACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAG CAACCAGATCGGCTCGGTGACCGAATCAATCCAGGCGTGAG < 41bp 1 0.493032135023554 1 0.219066560268402 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859423 chr17:4859430 synonymous SNV . 0 28 hm5C_associated_SNPs_31836 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 69bp
chr17 4859430 4859430 1 + G A READ 4859423 + 4859403 4859443 41 CAACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAG CAACCAGATCGGCTCGGTGACCGAATCAATCCAGGCGTGAG < 41bp 1 0.493032135023554 1 0.219066560268402 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859423 chr17:4859430 synonymous SNV . 0 28 hm5C_associated_SNPs_31836 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 9bp
chr17 4859430 4859430 1 + G A READ 4859424 + 4859404 4859444 41 AACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAGT AACCAGATCGGCTCGGTGACCGAATCAATCCAGGCGTGAGT < 41bp 1 0.384404905815287 1 0.477937430143356 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859424 chr17:4859430 synonymous SNV . 0 27 hm5C_associated_SNPs_31837 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 69bp
chr17 4859430 4859430 1 + G A READ 4859424 + 4859404 4859444 41 AACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAGT AACCAGATCGGCTCGGTGACCGAATCAATCCAGGCGTGAGT < 41bp 1 0.384404905815287 1 0.477937430143356 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859424 chr17:4859430 synonymous SNV . 0 27 hm5C_associated_SNPs_31837 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 9bp
chr7 133164808 133164808 1 + G A READ 133164812 + 133164792 133164832 41 GTTTCTCTGCAGGTTCGAATCGTCCTCCCATGCCATCAGTA GTTTCTCTGCAGGTTCAAATCGTCCTCCCATGCCATCAGTA < 41bp 1 0.282491534948024 1 0.158703446388245 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133164812 chr7:133164808 nonsynonymous SNV 0.974 3 17 hm5C_associated_SNPs_31838 0 0 1 0 2 EXOC4 chr7:133164804 3'AG 133164804 Downstream 5bp
chr7 133164808 133164808 1 + G A READ 133164812 + 133164792 133164832 41 GTTTCTCTGCAGGTTCGAATCGTCCTCCCATGCCATCAGTA GTTTCTCTGCAGGTTCAAATCGTCCTCCCATGCCATCAGTA < 41bp 1 0.282491534948024 1 0.158703446388245 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133164812 chr7:133164808 nonsynonymous SNV 0.974 3 17 hm5C_associated_SNPs_31838 0 0 1 0 2 EXOC4 chr7:133164892 5'GT 133164892 Upstream 85bp
chr3 138341076 138341076 1 + C T READ 138341068 + 138341048 138341088 41 TGGATGTTCAAATTAGTGGGCAAAGAAACATTCTATGTTGG TGGATGTTCAAATTAGTGGGCAAAGAAATATTCTATGTTGG < 41bp 1 0.129837472714824 1 0.355679929256439 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAIM ENSG00000158234 CDS Human protein_coding chr3:138341068 chr3:138341076 nonsynonymous SNV 0.997 1 29 hm5C_associated_SNPs_31839 0 0 1 0 1 FAIM chr3:138341030 3'AG 138341030 Downstream 47bp
chr1 110586383 110586383 1 + C T READ 110586381 + 110586361 110586401 41 GTCTGGAGGGGGAGACGTTTCCCCTGGAACGGGATGAAGTG GTCTGGAGGGGGAGACGTTTCCTCTGGAACGGGATGAAGTG < 41bp 1 0.366363492279984 1 0.363503038883209 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110586381 chr1:110586383 synonymous SNV . 0 23 hm5C_associated_SNPs_31840 0 0 1 0 1 STRIP1 chr1:110586478 5'GT 110586478 Upstream 96bp
chr1 78325057 78325057 1 + C T READ 78325041 + 78325021 78325061 41 GGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA GGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTTGACA < 41bp 1 0.192073424504009 1 0.100172162055969 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78325041 chr1:78325057 stopgain 0.998 1 37 hm5C_associated_SNPs_31841 0 0 0 0 2 MIGA1 chr1:78324999 3'AG 78324999 Downstream 59bp
chr1 78325057 78325057 1 + C T READ 78325041 + 78325021 78325061 41 GGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA GGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTTGACA < 41bp 1 0.192073424504009 1 0.100172162055969 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78325041 chr1:78325057 stopgain 0.998 1 37 hm5C_associated_SNPs_31841 0 0 0 0 2 MIGA1 chr1:78325071 5'GT 78325071 Upstream 15bp
chr15 38773558 38773558 1 + G A READ 38773574 + 38773554 38773594 41 CAACGATTACAATGGCACATCTACTTGCTGCTCGTGAAGAT CAACAATTACAATGGCACATCTACTTGCTGCTCGTGAAGAT < 41bp 1 0.374431147437734 1 0.120952934026718 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAM98B ENSG00000171262 CDS Human protein_coding chr15:38773574 chr15:38773558 synonymous SNV . 0 5 hm5C_associated_SNPs_31842 0 0 1 0 1 FAM98B chr15:38773493 3'AG 38773493 Downstream 66bp
chr2 207651563 207651563 1 + C T READ 207651570 + 207651550 207651590 41 GATGAATTACTTTCCCCTGGCTCCTTTTAATCAGCTTCTGC GATGAATTACTTTTCCCTGGCTCCTTTTAATCAGCTTCTGC < 41bp 1 0.296139274483926 1 0.0605533123016357 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207651570 chr2:207651563 nonsynonymous SNV 0.114 4 14 hm5C_associated_SNPs_31843 0 0 1 0 1 FASTKD2 chr2:207651623 5'GT 207651623 Upstream 61bp
chr2 207651563 207651563 1 + C T READ 207651572 + 207651552 207651592 41 TGAATTACTTTCCCCTGGCTCCTTTTAATCAGCTTCTGCAA TGAATTACTTTTCCCTGGCTCCTTTTAATCAGCTTCTGCAA < 41bp 1 0.0359047789317588 1 0.0136929154396057 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207651572 chr2:207651563 nonsynonymous SNV 0.114 4 12 hm5C_associated_SNPs_31844 0 0 1 0 1 FASTKD2 chr2:207651623 5'GT 207651623 Upstream 61bp
chr3 58128383 58128383 1 + G A READ 58128382 + 58128362 58128402 41 GCCTTCTGTTTTTAGGTGACCGAAGAGGCCTATGTCCCAGT GCCTTCTGTTTTTAGGTGACCAAAGAGGCCTATGTCCCAGT < 41bp 1 0.140982409044931 1 0.810310482978821 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58128382 chr3:58128383 nonsynonymous SNV 0.987 2 22 hm5C_associated_SNPs_31845 0 0 1 0 2 FLNB chr3:58128377 3'AG 58128377 Downstream 7bp
chr3 58128383 58128383 1 + G A READ 58128382 + 58128362 58128402 41 GCCTTCTGTTTTTAGGTGACCGAAGAGGCCTATGTCCCAGT GCCTTCTGTTTTTAGGTGACCAAAGAGGCCTATGTCCCAGT < 41bp 1 0.140982409044931 1 0.810310482978821 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58128382 chr3:58128383 nonsynonymous SNV 0.987 2 22 hm5C_associated_SNPs_31845 0 0 1 0 2 FLNB chr3:58128479 5'GT 58128479 Upstream 97bp
chr14 52417415 52417415 1 + G A READ 52417401 + 52417381 52417421 41 TCTATCCAGCACTCCGATGGCCAGCAACAACACCGCCAGCA TCTATCCAGCACTCCGATGGCCAGCAACAACACCACCAGCA < 41bp 1 0.298282408910617 1 0.393130093812943 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNG2 ENSG00000186469 CDS Human protein_coding chr14:52417401 chr14:52417415 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_31846 0 0 0 0 1 GNG2 chr14:52417483 5'GT 52417483 Upstream 69bp
chr1 109441582 109441582 1 + C A READ 109441598 + 109441578 109441618 41 ATTTCTTGGTGAATTTGAAACTGCCTCGGAATACTACAAGT ATTTATTGGTGAATTTGAAACTGCCTCGGAATACTACAAGT < 41bp 1 0.330912041808025 1 0.252547532320023 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GPSM2 ENSG00000121957 CDS Human protein_coding chr1:109441598 chr1:109441582 nonsynonymous SNV 1.000 5 5 hm5C_associated_SNPs_31847 0 0 1 0 1 GPSM2 chr1:109441616 5'GT 109441616 Upstream 35bp
chr10 1042096 1042096 1 + G A READ 1042089 + 1042069 1042109 41 TGATGAAGTATGGCGACTCTCTCTACCGCTGCAAACAGCTG TGATGAAGTATGGCGACTCTCTCTACCACTGCAAACAGCTG < 41bp 1 0.761786119549277 1 0.730729579925537 experiment 0.476427760901446 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1042089 chr10:1042096 nonsynonymous SNV 0.998 4 28 hm5C_associated_SNPs_31848 0 0 1 0 1 GTPBP4 chr10:1042182 5'GT 1042182 Upstream 87bp
chrX 2777919 2777919 1 + G A READ 2777923 + 2777903 2777943 41 GTCGTCCACTTTTTGGGGTCCATGAAACCTTGGAACTACAA GTCGTCCACTTTTTGGAGTCCATGAAACCTTGGAACTACAA < 41bp 1 0.33087354777285 1 0.198322683572769 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GYG2 ENSG00000056998 CDS Human protein_coding chrX:2777923 chrX:2777919 nonsynonymous SNV 0.159 4 17 hm5C_associated_SNPs_31849 0 0 0 0 1 GYG2 chrX:2777884 3'AG 2777884 Downstream 36bp
chr1 186106681 186106681 1 + G C READ 186106679 + 186106659 186106699 41 TGGAGAGCCTGCAGTGTCACCTGTGGAAAAGGCATCCAAAA TGGAGAGCCTGCAGTGTCACCTCTGGAAAAGGCATCCAAAA < 41bp 1 0.146126200488315 1 0.560147881507874 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HMCN1 ENSG00000143341 CDS Human protein_coding chr1:186106679 chr1:186106681 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_31851 0 0 0 0 1 HMCN1 chr1:186106630 3'AG 186106630 Downstream 52bp
chr2 176988295 176988295 1 + C T READ 176988301 + 176988281 176988321 41 ATTCGCAGCCGCAGCAGCAGCAACTTGACCCAAGTAAGTGC ATTCGCAGCCGCAGTAGCAGCAACTTGACCCAAGTAAGTGC < 41bp 1 0.240032159694712 1 0.0792005360126495 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HOXD9 ENSG00000128709 CDS Human protein_coding chr2:176988301 chr2:176988295 stopgain 0.998 0 15 hm5C_associated_SNPs_31852 0 0 0 0 1 HOXD9 chr2:176988313 5'GT 176988313 Upstream 19bp
chr12 104341158 104341158 1 + G A READ 104341157 + 104341137 104341177 41 ACAGAAGACACAGAGCAAGACGAAGATGAAGAAATGGATGT ACAGAAGACACAGAGCAAGACAAAGATGAAGAAATGGATGT < 41bp 1 0.464708201316654 1 0.210536360740662 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104341157 chr12:104341158 nonsynonymous SNV 0.109 0 22 hm5C_associated_SNPs_31853 0 0 1 0 3 HSP90B1 chr12:104341089 3'AG 104341089 Downstream 70bp
chr12 104341158 104341158 1 + G A READ 104341157 + 104341137 104341177 41 ACAGAAGACACAGAGCAAGACGAAGATGAAGAAATGGATGT ACAGAAGACACAGAGCAAGACAAAGATGAAGAAATGGATGT < 41bp 1 0.464708201316654 1 0.210536360740662 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104341157 chr12:104341158 nonsynonymous SNV 0.109 0 22 hm5C_associated_SNPs_31853 0 0 1 0 3 HSP90B1 chr12:104341150 3'AG 104341150 Downstream 9bp
chr12 104341158 104341158 1 + G A READ 104341157 + 104341137 104341177 41 ACAGAAGACACAGAGCAAGACGAAGATGAAGAAATGGATGT ACAGAAGACACAGAGCAAGACAAAGATGAAGAAATGGATGT < 41bp 1 0.464708201316654 1 0.210536360740662 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104341157 chr12:104341158 nonsynonymous SNV 0.109 0 22 hm5C_associated_SNPs_31853 0 0 1 0 3 HSP90B1 chr12:104341208 5'GT 104341208 Upstream 51bp
chr2 131103401 131103401 1 + G A READ 131103398 + 131103378 131103418 41 TTTGGTCCTACTGCCTACTTCACGCTGTGCAATGTGGTCAT TTTGGTCCTACTGCCTACTTCACACTGTGCAATGTGGTCAT < 41bp 1 0.458903394908726 1 0.0457570552825928 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IMP4 ENSG00000136718 CDS Human protein_coding chr2:131103398 chr2:131103401 synonymous SNV . 0 24 hm5C_associated_SNPs_31855 0 0 1 0 1 IMP4 chr2:131103352 3'AG 131103352 Downstream 50bp
chr1 215785252 215785252 1 + G A READ 215785244 + 215785224 215785264 41 CCAACAAACTATTTGTAAGACTCTCATCGACTGGAAAAAGG CCAACAAACTATTTGTAAGACTCTCATCAACTGGAAAAAGG < 41bp 1 0.115528878927463 1 0.0237694084644318 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215785244 chr1:215785252 synonymous SNV . 0 29 hm5C_associated_SNPs_31856 0 0 1 0 2 KCTD3 chr1:215785167 3'AG 215785167 Downstream 86bp
chr1 215785252 215785252 1 + G A READ 215785244 + 215785224 215785264 41 CCAACAAACTATTTGTAAGACTCTCATCGACTGGAAAAAGG CCAACAAACTATTTGTAAGACTCTCATCAACTGGAAAAAGG < 41bp 1 0.115528878927463 1 0.0237694084644318 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215785244 chr1:215785252 synonymous SNV . 0 29 hm5C_associated_SNPs_31856 0 0 1 0 2 KCTD3 chr1:215785263 5'GT 215785263 Upstream 12bp
chr1 233482334 233482334 1 + T C READ 233482335 + 233482315 233482355 41 GGCCCCCGAAGTGATCAAGTCTTCCTTGTTTTCTAAGGGAA GGCCCCCGAAGTGATCAAGCCTTCCTTGTTTTCTAAGGGAA < 41bp 1 0.115157771514135 1 0.0717900395393372 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233482335 chr1:233482334 nonsynonymous SNV 0.999 4 20 hm5C_associated_SNPs_31857 0 0 1 0 1 MAP3K21 chr1:233482368 5'GT 233482368 Upstream 35bp
chr12 57970146 57970146 1 + T C READ 57970126 + 57970106 57970146 41 GCCCGGCTCCGGGACGAGATCAACGAGAAGCAGAAGACCAT GCCCGGCTCCGGGACGAGATCAACGAGAAGCAGAAGACCAC < 41bp 1 0.686275535121934 1 0.527152419090271 experiment 0.627448929756132 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF5A ENSG00000155980 CDS Human protein_coding chr12:57970126 chr12:57970146 nonsynonymous SNV 0.998 2 41 hm5C_associated_SNPs_31859 0 0 0 0 1 KIF5A chr12:57970052 3'AG 57970052 Downstream 95bp
chr10 134980981 134980981 1 + C T READ 134980995 + 134980975 134981015 41 TCCATGCGGAGCGTGGCCCACGCCGCCATCTTCCAGAGCCT TCCATGTGGAGCGTGGCCCACGCCGCCATCTTCCAGAGCCT < 41bp 1 0.41781996901294 1 0.148197531700134 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KNDC1 ENSG00000171798 CDS Human protein_coding chr10:134980995 chr10:134980981 nonsynonymous SNV 0.302 2 7 hm5C_associated_SNPs_31860 0 0 1 0 1 KNDC1 chr10:134980885 3'AG 134980885 Downstream 97bp
chr1 32620257 32620257 1 + G A READ 32620246 + 32620226 32620266 41 GAAGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGA GAAGAGCTATAAGAACAATGCTCTAAACCCTAAAGAAATGA < 41bp 1 0.343343472165966 1 0.152183324098587 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620246 chr1:32620257 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_31861 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 69bp
chr1 32620257 32620257 1 + G A READ 32620246 + 32620226 32620266 41 GAAGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGA GAAGAGCTATAAGAACAATGCTCTAAACCCTAAAGAAATGA < 41bp 1 0.343343472165966 1 0.152183324098587 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620246 chr1:32620257 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_31861 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 66bp
chr1 32620257 32620257 1 + G A READ 32620248 + 32620228 32620268 41 AGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGAGA AGAGCTATAAGAACAATGCTCTAAACCCTAAAGAAATGAGA < 41bp 1 0.283332718850094 1 0.200311243534088 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620248 chr1:32620257 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_31862 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 69bp
chr1 32620257 32620257 1 + G A READ 32620248 + 32620228 32620268 41 AGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGAGA AGAGCTATAAGAACAATGCTCTAAACCCTAAAGAAATGAGA < 41bp 1 0.283332718850094 1 0.200311243534088 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620248 chr1:32620257 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_31862 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 66bp
chr1 32620257 32620257 1 + G A READ 32620253 + 32620233 32620273 41 TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAG TATAAGAACAATGCTCTAAACCCTAAAGAAATGAGACGAAG < 41bp 1 0.33501407209936 1 0.166236191987991 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620253 chr1:32620257 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_31863 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 69bp
chr1 32620257 32620257 1 + G A READ 32620253 + 32620233 32620273 41 TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAG TATAAGAACAATGCTCTAAACCCTAAAGAAATGAGACGAAG < 41bp 1 0.33501407209936 1 0.166236191987991 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620253 chr1:32620257 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_31863 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 66bp
chr1 32620257 32620257 1 + G A READ 32620254 + 32620234 32620274 41 ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAGA ATAAGAACAATGCTCTAAACCCTAAAGAAATGAGACGAAGA < 41bp 1 0.12989167466237 1 0.21612286567688 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620254 chr1:32620257 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_31864 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 69bp
chr1 32620257 32620257 1 + G A READ 32620254 + 32620234 32620274 41 ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAGA ATAAGAACAATGCTCTAAACCCTAAAGAAATGAGACGAAGA < 41bp 1 0.12989167466237 1 0.21612286567688 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620254 chr1:32620257 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_31864 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 66bp
chr12 52636903 52636903 1 + C T READ 52636909 + 52636889 52636929 41 CTGCAGGCTGAGATCGACAACATCAAGAACCAGGTGGGACA CTGCAGGCTGAGATTGACAACATCAAGAACCAGGTGGGACA < 41bp 1 0.357862534648022 1 0.0397600531578064 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636909 chr12:52636903 synonymous SNV . 0 15 hm5C_associated_SNPs_31866 0 0 0 0 1 KRT7 chr12:52636921 5'GT 52636921 Upstream 19bp
chr12 52636903 52636903 1 + C T READ 52636912 + 52636892 52636932 41 CAGGCTGAGATCGACAACATCAAGAACCAGGTGGGACAAGT CAGGCTGAGATTGACAACATCAAGAACCAGGTGGGACAAGT < 41bp 1 0.636457428985718 1 0.281375825405121 experiment 0.727085142028564 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636912 chr12:52636903 synonymous SNV . 0 12 hm5C_associated_SNPs_31867 0 0 0 0 1 KRT7 chr12:52636921 5'GT 52636921 Upstream 19bp
chr12 52636903 52636903 1 + C T READ 52636918 + 52636898 52636938 41 GAGATCGACAACATCAAGAACCAGGTGGGACAAGTCCTCCT GAGATTGACAACATCAAGAACCAGGTGGGACAAGTCCTCCT < 41bp 1 0.324175187515622 1 0.57094806432724 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636918 chr12:52636903 synonymous SNV . 0 6 hm5C_associated_SNPs_31868 0 0 0 0 1 KRT7 chr12:52636921 5'GT 52636921 Upstream 19bp
chr12 52636903 52636903 1 + C T READ 52636919 + 52636899 52636939 41 AGATCGACAACATCAAGAACCAGGTGGGACAAGTCCTCCTG AGATTGACAACATCAAGAACCAGGTGGGACAAGTCCTCCTG < 41bp 1 0.717577708827417 1 0.942319273948669 experiment 0.564844582345167 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636919 chr12:52636903 synonymous SNV . 0 5 hm5C_associated_SNPs_31869 0 0 0 0 1 KRT7 chr12:52636921 5'GT 52636921 Upstream 19bp
chr12 52695769 52695769 1 + C T READ 52695783 + 52695763 52695803 41 GCCCGGCCGCTGCTGCATCACCGCCGCCCCCTACCGTGGCA GCCCGGTCGCTGCTGCATCACCGCCGCCCCCTACCGTGGCA < 41bp 1 0.427870381249898 1 0.122179955244064 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KRT86 ENSG00000170442 CDS Human protein_coding chr12:52695783 chr12:52695769 synonymous SNV . 0 7 hm5C_associated_SNPs_31870 0 0 0 0 1 KRT86 chr12:52695697 3'AG 52695697 Downstream 73bp
chr18 21508151 21508151 1 + G A READ 21508167 + 21508147 21508187 41 TGTCGTTAGATTGAATGATACTGTGGGAGTAACCAAAAAGT TGTCATTAGATTGAATGATACTGTGGGAGTAACCAAAAAGT < 41bp 1 0.1219037259866 1 0.232439517974854 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21508167 chr18:21508151 nonsynonymous SNV 0.968 0 5 hm5C_associated_SNPs_31871 0 0 0 0 2 LAMA3 chr18:21508087 3'AG 21508087 Downstream 65bp
chr18 21508151 21508151 1 + G A READ 21508167 + 21508147 21508187 41 TGTCGTTAGATTGAATGATACTGTGGGAGTAACCAAAAAGT TGTCATTAGATTGAATGATACTGTGGGAGTAACCAAAAAGT < 41bp 1 0.1219037259866 1 0.232439517974854 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21508167 chr18:21508151 nonsynonymous SNV 0.968 0 5 hm5C_associated_SNPs_31871 0 0 0 0 2 LAMA3 chr18:21508204 5'GT 21508204 Upstream 54bp
chr2 30756143 30756143 1 + T G READ 30756147 + 30756127 30756167 41 TCAGATTGGAGAAAATTTGCCTCAAAGCGAGTCTCAAAGGT TCAGATTGGAGAAAATGTGCCTCAAAGCGAGTCTCAAAGGT < 41bp 1 0.624163106801504 1 0.596984028816223 experiment 0.751673786396992 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LCLAT1 ENSG00000172954 CDS Human protein_coding chr2:30756147 chr2:30756143 nonsynonymous SNV 0.989 4 17 hm5C_associated_SNPs_31872 0 0 1 0 1 LCLAT1 chr2:30756180 5'GT 30756180 Upstream 38bp
chr4 6598966 6598966 1 + G A READ 6598971 + 6598951 6598991 41 TGTGGCCGGCCCCCCGTGGGCATCTGGACCCCACCTGGGCC TGTGGCCGGCCCCCCATGGGCATCTGGACCCCACCTGGGCC < 41bp 1 0.300536138889498 1 0.171203255653381 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6598971 chr4:6598966 nonsynonymous SNV 0.000 0 16 hm5C_associated_SNPs_31875 0 0 0 0 1 MAN2B2 chr4:6599030 5'GT 6599030 Upstream 65bp
chr19 40718777 40718777 1 + C T READ 40718786 + 40718766 40718806 41 GGACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTG GGACATGGAGCTGCGGTGGGCCCCCAAAGAAGGAAGAACTG < 41bp 1 0.0528484838781993 1 0.109803110361099 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718786 chr19:40718777 nonsynonymous SNV 0.995 4 12 hm5C_associated_SNPs_31876 0 0 1 0 1 MAP3K10 chr19:40718712 3'AG 40718712 Downstream 66bp
chr19 40718777 40718777 1 + C T READ 40718787 + 40718767 40718807 41 GACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGG GACATGGAGCTGCGGTGGGCCCCCAAAGAAGGAAGAACTGG < 41bp 1 0.211212926997987 1 0.432009905576706 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718787 chr19:40718777 nonsynonymous SNV 0.995 4 11 hm5C_associated_SNPs_31877 0 0 1 0 1 MAP3K10 chr19:40718712 3'AG 40718712 Downstream 66bp
chr19 40718777 40718777 1 + C T READ 40718788 + 40718768 40718808 41 ACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGT ACATGGAGCTGCGGTGGGCCCCCAAAGAAGGAAGAACTGGT < 41bp 1 0.222262217584794 1 0.613302946090698 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718788 chr19:40718777 nonsynonymous SNV 0.995 4 10 hm5C_associated_SNPs_31878 0 0 1 0 1 MAP3K10 chr19:40718712 3'AG 40718712 Downstream 66bp
chr19 40718777 40718777 1 + C T READ 40718789 + 40718769 40718809 41 CATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGTC CATGGAGCTGCGGTGGGCCCCCAAAGAAGGAAGAACTGGTC < 41bp 1 0.201520149184058 1 0.714258849620819 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718789 chr19:40718777 nonsynonymous SNV 0.995 4 9 hm5C_associated_SNPs_31879 0 0 1 0 1 MAP3K10 chr19:40718712 3'AG 40718712 Downstream 66bp
chr19 40718777 40718777 1 + C T READ 40718790 + 40718770 40718810 41 ATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGTCG ATGGAGCTGCGGTGGGCCCCCAAAGAAGGAAGAACTGGTCG < 41bp 1 0.377811346475896 1 0.844381213188171 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718790 chr19:40718777 nonsynonymous SNV 0.995 4 8 hm5C_associated_SNPs_31880 0 0 1 0 1 MAP3K10 chr19:40718712 3'AG 40718712 Downstream 66bp
chr6 161510473 161510473 1 + G A READ 161510492 + 161510472 161510512 41 CGGTCATCGCCAAAGCTTTGCAGCAGCTGAAGGTATTACAC CAGTCATCGCCAAAGCTTTGCAGCAGCTGAAGGTATTACAC < 41bp 1 0.650873285927368 1 0.450023621320724 experiment 0.698253428145265 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161510492 chr6:161510473 synonymous SNV . 0 2 hm5C_associated_SNPs_31881 0 0 1 0 1 MAP3K4 chr6:161510503 5'GT 161510503 Upstream 31bp
chr19 45790785 45790785 1 + C T READ 45790805 + 45790785 45790825 41 CCAGGCCGGAAGGCGAGCTGCAGCACCGCGGGGAGTGGGAG TCAGGCCGGAAGGCGAGCTGCAGCACCGCGGGGAGTGGGAG < 41bp 1 0.798234105985051 1 0.211376756429672 experiment 0.403531788029897 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45790805 chr19:45790785 nonsynonymous SNV 0.976 1 1 hm5C_associated_SNPs_31882 0 0 0 0 1 MARK4 chr19:45790705 3'AG 45790705 Downstream 81bp
chr5 66432404 66432404 1 + G T READ 66432398 + 66432378 66432418 41 TTCTTCCTTCTAGATGAGATCAACTGGCCTGAGAAGGATGA TTCTTCCTTCTAGATGAGATCAACTGTCCTGAGAAGGATGA < 41bp 1 0.0983398934970076 1 0.109380751848221 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAST4 ENSG00000069020 CDS Human protein_coding chr5:66432398 chr5:66432404 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_31883 0 0 1 0 2 MAST4 chr5:66432391 3'AG 66432391 Downstream 14bp
chr5 66432404 66432404 1 + G T READ 66432398 + 66432378 66432418 41 TTCTTCCTTCTAGATGAGATCAACTGGCCTGAGAAGGATGA TTCTTCCTTCTAGATGAGATCAACTGTCCTGAGAAGGATGA < 41bp 1 0.0983398934970076 1 0.109380751848221 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAST4 ENSG00000069020 CDS Human protein_coding chr5:66432398 chr5:66432404 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_31883 0 0 1 0 2 MAST4 chr5:66432492 5'GT 66432492 Upstream 89bp
chr10 13233336 13233336 1 + A G READ 13233334 + 13233314 13233354 41 TCCTAAGAAGAAGATTCAAACCACTCTGAGTAATCTGGTTG TCCTAAGAAGAAGATTCAAACCGCTCTGAGTAATCTGGTTG < 41bp 1 0.245947674132083 1 0.0471171140670776 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM10 ENSG00000065328 CDS Human protein_coding chr10:13233334 chr10:13233336 nonsynonymous SNV 0.982 2 23 hm5C_associated_SNPs_31884 0 0 1 0 2 MCM10 chr10:13233299 3'AG 13233299 Downstream 38bp
chr10 13233336 13233336 1 + A G READ 13233334 + 13233314 13233354 41 TCCTAAGAAGAAGATTCAAACCACTCTGAGTAATCTGGTTG TCCTAAGAAGAAGATTCAAACCGCTCTGAGTAATCTGGTTG < 41bp 1 0.245947674132083 1 0.0471171140670776 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM10 ENSG00000065328 CDS Human protein_coding chr10:13233334 chr10:13233336 nonsynonymous SNV 0.982 2 23 hm5C_associated_SNPs_31884 0 0 1 0 2 MCM10 chr10:13233399 5'GT 13233399 Upstream 64bp
chr18 19348680 19348680 1 + A T READ 19348668 + 19348648 19348688 41 AGAGTGGTGCGAGGAGTGGACTGGCAGTGGGAAGATCAAGA AGAGTGGTGCGAGGAGTGGACTGGCAGTGGGATGATCAAGA < 41bp 1 0.636606288996239 1 0.239865213632584 experiment 0.726787422007522 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIB1 ENSG00000101752 CDS Human protein_coding chr18:19348668 chr18:19348680 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_31885 0 0 1 0 1 MIB1 chr18:19348713 5'GT 19348713 Upstream 34bp
chr12 132328570 132328570 1 + G A READ 132328586 + 132328566 132328606 41 CGGCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCCCCA CGGCACAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCCCCA < 41bp 1 0.332442873625072 1 0.241968899965286 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132328586 chr12:132328570 synonymous SNV . 0 5 hm5C_associated_SNPs_31887 0 0 0 0 2 MMP17 chr12:132328542 3'AG 132328542 Downstream 29bp
chr12 132328570 132328570 1 + G A READ 132328586 + 132328566 132328606 41 CGGCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCCCCA CGGCACAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCCCCA < 41bp 1 0.332442873625072 1 0.241968899965286 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132328586 chr12:132328570 synonymous SNV . 0 5 hm5C_associated_SNPs_31887 0 0 0 0 2 MMP17 chr12:132328626 5'GT 132328626 Upstream 57bp
chr12 132328570 132328570 1 + G A READ 132328588 + 132328568 132328608 41 GCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCCCCAGA GCACAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCCCCAGA < 41bp 1 0.234152541437567 1 0.200523734092712 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132328588 chr12:132328570 synonymous SNV . 0 3 hm5C_associated_SNPs_31888 0 0 0 0 2 MMP17 chr12:132328542 3'AG 132328542 Downstream 29bp
chr12 132328570 132328570 1 + G A READ 132328588 + 132328568 132328608 41 GCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCCCCAGA GCACAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCCCCAGA < 41bp 1 0.234152541437567 1 0.200523734092712 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132328588 chr12:132328570 synonymous SNV . 0 3 hm5C_associated_SNPs_31888 0 0 0 0 2 MMP17 chr12:132328626 5'GT 132328626 Upstream 57bp
chr3 9691420 9691420 1 + C T READ 9691405 + 9691385 9691425 41 CAGTACCGGGCCAAGGATGGCAGCGGGACCGGCGGCTCTAA CAGTACCGGGCCAAGGATGGCAGCGGGACCGGCGGTTCTAA < 41bp 1 0.714945321919797 1 0.883234143257141 experiment 0.570109356160407 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9691405 chr3:9691420 synonymous SNV . 0 36 hm5C_associated_SNPs_31890 0 0 1 0 1 MTMR14 chr3:9691426 5'GT 9691426 Upstream 7bp
chr3 169496569 169496569 1 + G T READ 169496589 + 169496569 169496609 41 GAAATTCATCAGGCTGCTGACTATCTCAAAGTGGAAGAGGT TAAATTCATCAGGCTGCTGACTATCTCAAAGTGGAAGAGGT < 41bp 1 0.11393772756384 1 0.0614917576313019 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MYNN ENSG00000085274 CDS Human protein_coding chr3:169496589 chr3:169496569 stopgain 1.000 1 1 hm5C_associated_SNPs_31891 0 0 1 0 1 MYNN chr3:169496556 3'AG 169496556 Downstream 14bp
chr3 47041754 47041754 1 + C T READ 47041773 + 47041753 47041793 41 TCCTTCGCCACTGGATGGGCCGCGGCCCTTTCCTGCTGCTC TTCTTCGCCACTGGATGGGCCGCGGCCCTTTCCTGCTGCTC < 41bp 1 0.355399465453429 1 0.652104258537292 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041773 chr3:47041754 nonsynonymous SNV 0.998 3 2 hm5C_associated_SNPs_31892 0 0 1 0 1 NBEAL2 chr3:47041686 3'AG 47041686 Downstream 69bp
chr11 67378475 67378475 1 + G A READ 67378458 + 67378438 67378478 41 CACCAGTTCTCTTCCCATTTCCCTGAAGGAGTGTTTGGCTG CACCAGTTCTCTTCCCATTTCCCTGAAGGAGTGTTTGACTG < 41bp 1 0.133294648651347 1 0.445529371500015 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67378458 chr11:67378475 nonsynonymous SNV 0.997 3 38 hm5C_associated_SNPs_31893 0 0 1 0 1 NDUFV1 chr11:67378466 3'AG 67378466 Downstream 10bp
chr11 67378475 67378475 1 + G A READ 67378459 + 67378439 67378479 41 ACCAGTTCTCTTCCCATTTCCCTGAAGGAGTGTTTGGCTGC ACCAGTTCTCTTCCCATTTCCCTGAAGGAGTGTTTGACTGC < 41bp 1 0.227434101102135 1 0.323736548423767 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67378459 chr11:67378475 nonsynonymous SNV 0.997 3 37 hm5C_associated_SNPs_31894 0 0 1 0 1 NDUFV1 chr11:67378466 3'AG 67378466 Downstream 10bp
chr11 67378475 67378475 1 + G A READ 67378460 + 67378440 67378480 41 CCAGTTCTCTTCCCATTTCCCTGAAGGAGTGTTTGGCTGCC CCAGTTCTCTTCCCATTTCCCTGAAGGAGTGTTTGACTGCC < 41bp 1 0.623225794148238 1 0.8675137758255 experiment 0.753548411703524 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67378460 chr11:67378475 nonsynonymous SNV 0.997 3 36 hm5C_associated_SNPs_31895 0 0 1 0 1 NDUFV1 chr11:67378466 3'AG 67378466 Downstream 10bp
chr17 27064865 27064865 1 + C T READ 27064861 + 27064841 27064881 41 CCCCCGGGGACCTGTGAGGCCAGCCATCCCACCACCACTGT CCCCCGGGGACCTGTGAGGCCAGCTATCCCACCACCACTGT < 41bp 1 0.485490010150642 1 0.108242005109787 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NEK8 ENSG00000160602 CDS Human protein_coding chr17:27064861 chr17:27064865 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_31896 0 0 1 0 1 NEK8 chr17:27064837 3'AG 27064837 Downstream 29bp
chr11 119045975 119045975 1 + C T READ 119045961 + 119045941 119045981 41 GCTGCCTCTGCGGGCTCTGCCTCTGCTCTTCAACCTGATCA GCTGCCTCTGCGGGCTCTGCCTCTGCTCTTCAACTTGATCA < 41bp 1 0.325791269025556 1 0.284868389368057 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119045961 chr11:119045975 synonymous SNV . 0 35 hm5C_associated_SNPs_31897 0 0 1 0 1 NLRX1 chr11:119045983 5'GT 119045983 Upstream 9bp
chr17 38249487 38249487 1 + G A READ 38249489 + 38249469 38249509 41 CGAAGAGCCCGCAGCAGCGTCTCCTGGAGCTGCTCCACCGA CGAAGAGCCCGCAGCAGCATCTCCTGGAGCTGCTCCACCGA < 41bp 1 0.605481351765514 1 0.608536124229431 experiment 0.789037296468972 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NR1D1;THRA ENSG00000126351;ENSG00000126368 CDS Human other chr17:38249489 chr17:38249487 nonsynonymous SNV 1.000 5 19 hm5C_associated_SNPs_31898 0 0 0 0 1 NR1D1;THRA chr17:38249390 3'AG 38249390 Downstream 98bp
chr2 27656146 27656146 1 + G A READ 27656133 + 27656113 27656153 41 CAGTGCAGGCCTGAGTGTTCCTTCCAGCATGTCGGAGGGGG CAGTGCAGGCCTGAGTGTTCCTTCCAGCATGTCAGAGGGGG < 41bp 1 0.294382482175054 1 0.10794061422348 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27656133 chr2:27656146 synonymous SNV . 0 34 hm5C_associated_SNPs_31899 0 0 1 0 2 NRBP1 chr2:27656116 3'AG 27656116 Downstream 31bp
chr2 27656146 27656146 1 + G A READ 27656133 + 27656113 27656153 41 CAGTGCAGGCCTGAGTGTTCCTTCCAGCATGTCGGAGGGGG CAGTGCAGGCCTGAGTGTTCCTTCCAGCATGTCAGAGGGGG < 41bp 1 0.294382482175054 1 0.10794061422348 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27656133 chr2:27656146 synonymous SNV . 0 34 hm5C_associated_SNPs_31899 0 0 1 0 2 NRBP1 chr2:27656121 3'AG 27656121 Downstream 26bp
chr12 56504362 56504362 1 + G T READ 56504375 + 56504355 56504395 41 GGACAGAGAACCACTATTTACAAACGAGACCCCTCTAAACA GGACAGATAACCACTATTTACAAACGAGACCCCTCTAAACA < 41bp 1 0.303507244903103 1 0.156038284301758 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56504375 chr12:56504362 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_31902 0 0 1 0 1 PA2G4 chr12:56504343 3'AG 56504343 Downstream 20bp
chr10 105172967 105172967 1 + G A READ 105172958 + 105172938 105172978 41 CTTCCTACAGCCTGGACGCCCACTCACCCGACTCTCTTGCC CTTCCTACAGCCTGGACGCCCACTCACCCAACTCTCTTGCC < 41bp 1 0.108813157227193 1 0.0645788908004761 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105172958 chr10:105172967 nonsynonymous SNV 0.002 0 30 hm5C_associated_SNPs_31904 0 0 1 0 1 PDCD11 chr10:105172873 3'AG 105172873 Downstream 95bp
chr19 10571763 10571763 1 + G A READ 10571761 + 10571741 10571781 41 ATCACCCTGGGGTCTCCAACCAGTTCCTCATCAACACCAGT ATCACCCTGGGGTCTCCAACCAATTCCTCATCAACACCAGT < 41bp 1 0.071150867334094 1 0.550095677375793 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10571761 chr19:10571763 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_31905 0 0 0 0 2 PDE4A chr19:10571680 3'AG 10571680 Downstream 84bp
chr19 10571763 10571763 1 + G A READ 10571761 + 10571741 10571781 41 ATCACCCTGGGGTCTCCAACCAGTTCCTCATCAACACCAGT ATCACCCTGGGGTCTCCAACCAATTCCTCATCAACACCAGT < 41bp 1 0.071150867334094 1 0.550095677375793 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10571761 chr19:10571763 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_31905 0 0 0 0 2 PDE4A chr19:10571779 5'GT 10571779 Upstream 17bp
chrX 205504 205504 1 + C T READ 205500 + 205480 205520 41 AACAAGGCCTTGCCCTGCATCACGCGCCCTGTCGTGCTGAA AACAAGGCCTTGCCCTGCATCACGTGCCCTGTCGTGCTGAA < 41bp 1 0.57269343416237 1 0.0922767817974091 experiment 0.854613131675261 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:205500 chrX:205504 nonsynonymous SNV 0.009 3 25 hm5C_associated_SNPs_31906 0 0 1 0 1 PLCXD1 chrX:205536 5'GT 205536 Upstream 33bp
chr17 4720029 4720029 1 + C T READ 4720020 + 4720000 4720040 41 TTATCACCAAGGACTGGGTGCAGCTGGACCGGCCTTTCGAA TTATCACCAAGGACTGGGTGCAGCTGGACTGGCCTTTCGAA < 41bp 1 0.275208657485837 1 0.176264971494675 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD2 ENSG00000129219 CDS Human protein_coding chr17:4720020 chr17:4720029 nonsynonymous SNV 0.990 2 30 hm5C_associated_SNPs_31907 0 0 1 0 1 PLD2 chr17:4720041 5'GT 4720041 Upstream 13bp
chr10 118313342 118313342 1 + G A READ 118313333 + 118313313 118313353 41 TGGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTT TGGAAGGAGAACCAATGGGACCATTGGACACATCACAGGTT < 41bp 1 0.132276449359028 1 0.0838519334793091 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313333 chr10:118313342 nonsynonymous SNV 0.479 5 30 hm5C_associated_SNPs_31911 0 0 0 0 1 PNLIP chr10:118313350 5'GT 118313350 Upstream 9bp
chr10 118313342 118313342 1 + G A READ 118313334 + 118313314 118313354 41 GGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTTG GGAAGGAGAACCAATGGGACCATTGGACACATCACAGGTTG < 41bp 1 0.454529340690501 1 0.167170166969299 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313334 chr10:118313342 nonsynonymous SNV 0.479 5 29 hm5C_associated_SNPs_31912 0 0 0 0 1 PNLIP chr10:118313350 5'GT 118313350 Upstream 9bp
chr22 44330507 44330507 1 + C T READ 44330489 + 44330469 44330509 41 GCTTGCTTTGCTCACAGGTGCTGGGAGAGATATGCCTTCGA GCTTGCTTTGCTCACAGGTGCTGGGAGAGATATGCCTTTGA < 41bp 1 0.657131204020224 1 0.625377476215363 experiment 0.685737591959553 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44330489 chr22:44330507 stopgain 0.391 0 39 hm5C_associated_SNPs_31913 0 0 1 0 1 PNPLA3 chr22:44330486 3'AG 44330486 Downstream 22bp
chr11 65062101 65062101 1 + C A READ 65062109 + 65062089 65062129 41 CTGCTTTTCCACCTGGGGGCCGAGGAGATCAGTAGGTAAGA CTGCTTTTCCACATGGGGGCCGAGGAGATCAGTAGGTAAGA < 41bp 1 0.497343279425625 1 0.719063878059387 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLA2 ENSG00000014138 CDS Human protein_coding chr11:65062109 chr11:65062101 nonsynonymous SNV 0.998 0 13 hm5C_associated_SNPs_31914 0 0 1 0 2 POLA2 chr11:65062017 3'AG 65062017 Downstream 85bp
chr11 65062101 65062101 1 + C A READ 65062109 + 65062089 65062129 41 CTGCTTTTCCACCTGGGGGCCGAGGAGATCAGTAGGTAAGA CTGCTTTTCCACATGGGGGCCGAGGAGATCAGTAGGTAAGA < 41bp 1 0.497343279425625 1 0.719063878059387 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLA2 ENSG00000014138 CDS Human protein_coding chr11:65062109 chr11:65062101 nonsynonymous SNV 0.998 0 13 hm5C_associated_SNPs_31914 0 0 1 0 2 POLA2 chr11:65062123 5'GT 65062123 Upstream 23bp
chr19 49644753 49644753 1 + C T READ 49644738 + 49644718 49644758 41 GGGCTAGCCAAGCTGACAGGCCCAGGAGACAAGGACCGAAG GGGCTAGCCAAGCTGACAGGCCCAGGAGACAAGGATCGAAG < 41bp 1 0.169842002713876 1 0.173191606998444 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49644738 chr19:49644753 synonymous SNV . 0 36 hm5C_associated_SNPs_31915 0 0 0 0 2 PPFIA3 chr19:49644677 3'AG 49644677 Downstream 77bp
chr19 49644753 49644753 1 + C T READ 49644738 + 49644718 49644758 41 GGGCTAGCCAAGCTGACAGGCCCAGGAGACAAGGACCGAAG GGGCTAGCCAAGCTGACAGGCCCAGGAGACAAGGATCGAAG < 41bp 1 0.169842002713876 1 0.173191606998444 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49644738 chr19:49644753 synonymous SNV . 0 36 hm5C_associated_SNPs_31915 0 0 0 0 2 PPFIA3 chr19:49644770 5'GT 49644770 Upstream 18bp
chr19 46887100 46887100 1 + G A READ 46887105 + 46887085 46887125 41 CTCCTCAACATATTCGAGCTCAACGGTTTACCCTCGGAGAC CTCCTCAACATATTCAAGCTCAACGGTTTACCCTCGGAGAC < 41bp 1 0.585198487500381 1 0.228063553571701 experiment 0.829603024999239 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46887105 chr19:46887100 nonsynonymous SNV 0.998 0 16 hm5C_associated_SNPs_31916 0 0 1 0 3 PPP5C chr19:46887037 3'AG 46887037 Downstream 64bp
chr19 46887100 46887100 1 + G A READ 46887105 + 46887085 46887125 41 CTCCTCAACATATTCGAGCTCAACGGTTTACCCTCGGAGAC CTCCTCAACATATTCAAGCTCAACGGTTTACCCTCGGAGAC < 41bp 1 0.585198487500381 1 0.228063553571701 experiment 0.829603024999239 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46887105 chr19:46887100 nonsynonymous SNV 0.998 0 16 hm5C_associated_SNPs_31916 0 0 1 0 3 PPP5C chr19:46887041 3'AG 46887041 Downstream 60bp
chr19 46887100 46887100 1 + G A READ 46887105 + 46887085 46887125 41 CTCCTCAACATATTCGAGCTCAACGGTTTACCCTCGGAGAC CTCCTCAACATATTCAAGCTCAACGGTTTACCCTCGGAGAC < 41bp 1 0.585198487500381 1 0.228063553571701 experiment 0.829603024999239 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46887105 chr19:46887100 nonsynonymous SNV 0.998 0 16 hm5C_associated_SNPs_31916 0 0 1 0 3 PPP5C chr19:46887135 5'GT 46887135 Upstream 36bp
chr2 11300652 11300652 1 + G A READ 11300656 + 11300636 11300676 41 CGCTGACCTACCTGGAGTACCCCATCCTCATCGCGCAAGGT CGCTGACCTACCTGGAATACCCCATCCTCATCGCGCAAGGT < 41bp 1 0.223799655282587 1 0.20813649892807 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11300656 chr2:11300652 synonymous SNV . 0 17 hm5C_associated_SNPs_31917 0 0 1 0 2 PQLC3 chr2:11300592 3'AG 11300592 Downstream 61bp
chr2 11300652 11300652 1 + G A READ 11300656 + 11300636 11300676 41 CGCTGACCTACCTGGAGTACCCCATCCTCATCGCGCAAGGT CGCTGACCTACCTGGAATACCCCATCCTCATCGCGCAAGGT < 41bp 1 0.223799655282587 1 0.20813649892807 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11300656 chr2:11300652 synonymous SNV . 0 17 hm5C_associated_SNPs_31917 0 0 1 0 2 PQLC3 chr2:11300674 5'GT 11300674 Upstream 23bp
chr19 806468 806468 1 + C T READ 806450 + 806430 806470 41 CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGG CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGTGG < 41bp 1 0.058145924467699 1 0.0848051309585571 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806450 chr19:806468 nonsynonymous SNV 0.002 1 39 hm5C_associated_SNPs_31918 0 0 1 0 2 PTBP1 chr19:806408 3'AG 806408 Downstream 61bp
chr19 806468 806468 1 + C T READ 806450 + 806430 806470 41 CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGG CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGTGG < 41bp 1 0.058145924467699 1 0.0848051309585571 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806450 chr19:806468 nonsynonymous SNV 0.002 1 39 hm5C_associated_SNPs_31918 0 0 1 0 2 PTBP1 chr19:806556 5'GT 806556 Upstream 89bp
chr19 806468 806468 1 + C T READ 806451 + 806431 806471 41 GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGGC GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGTGGC < 41bp 1 0.164238978359416 1 0.0773604214191437 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806451 chr19:806468 nonsynonymous SNV 0.002 1 38 hm5C_associated_SNPs_31919 0 0 1 0 2 PTBP1 chr19:806408 3'AG 806408 Downstream 61bp
chr19 806468 806468 1 + C T READ 806451 + 806431 806471 41 GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGGC GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGTGGC < 41bp 1 0.164238978359416 1 0.0773604214191437 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806451 chr19:806468 nonsynonymous SNV 0.002 1 38 hm5C_associated_SNPs_31919 0 0 1 0 2 PTBP1 chr19:806556 5'GT 806556 Upstream 89bp
chr6 163984542 163984542 1 + G A READ 163984557 + 163984537 163984577 41 CCTGCGTACTCCTACGCCAGCTGGCCCTACCATAATGCCTT CCTGCATACTCCTACGCCAGCTGGCCCTACCATAATGCCTT < 41bp 1 0.388291942835378 1 0.131892293691635 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QKI ENSG00000112531 CDS Human protein_coding chr6:163984557 chr6:163984542 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_31920 0 0 1 0 2 QKI chr6:163984452 3'AG 163984452 Downstream 91bp
chr6 163984542 163984542 1 + G A READ 163984557 + 163984537 163984577 41 CCTGCGTACTCCTACGCCAGCTGGCCCTACCATAATGCCTT CCTGCATACTCCTACGCCAGCTGGCCCTACCATAATGCCTT < 41bp 1 0.388291942835378 1 0.131892293691635 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QKI ENSG00000112531 CDS Human protein_coding chr6:163984557 chr6:163984542 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_31920 0 0 1 0 2 QKI chr6:163984476 3'AG 163984476 Downstream 67bp
chr17 79990843 79990843 1 + C A READ 79990825 + 79990805 79990845 41 TCCCACCTTTTTCCCAAGGACGTCTTTCTGATCTGCTTCTC TCCCACCTTTTTCCCAAGGACGTCTTTCTGATCTGCTTATC < 41bp 1 0.157017178472107 1 0.0413037240505219 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAC3 ENSG00000169750 CDS Human protein_coding chr17:79990825 chr17:79990843 nonsynonymous SNV 0.999 3 39 hm5C_associated_SNPs_31921 0 0 1 0 2 RAC3 chr17:79990823 3'AG 79990823 Downstream 21bp
chr17 79990843 79990843 1 + C A READ 79990825 + 79990805 79990845 41 TCCCACCTTTTTCCCAAGGACGTCTTTCTGATCTGCTTCTC TCCCACCTTTTTCCCAAGGACGTCTTTCTGATCTGCTTATC < 41bp 1 0.157017178472107 1 0.0413037240505219 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAC3 ENSG00000169750 CDS Human protein_coding chr17:79990825 chr17:79990843 nonsynonymous SNV 0.999 3 39 hm5C_associated_SNPs_31921 0 0 1 0 2 RAC3 chr17:79990885 5'GT 79990885 Upstream 43bp
chr12 118462802 118462802 1 + G A READ 118462801 + 118462781 118462821 41 GTTCCCCGCCTGGAACATGTCGTGGAAGAAGAGAAGTGAGT GTTCCCCGCCTGGAACATGTCATGGAAGAAGAGAAGTGAGT < 41bp 1 0.689695700664139 1 0.0993531048297882 experiment 0.620608598671721 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RFC5 ENSG00000111445 CDS Human protein_coding chr12:118462801 chr12:118462802 nonsynonymous SNV 0.748 1 22 hm5C_associated_SNPs_31922 0 0 1 0 1 RFC5 chr12:118462815 5'GT 118462815 Upstream 14bp
chr11 214322 214322 1 + C T READ 214325 + 214305 214345 41 TATGGAGCAGCAGCTCTCCTCGGACCCTGACTCGGACCCTG TATGGAGCAGCAGCTCTTCTCGGACCCTGACTCGGACCCTG < 41bp 1 0.563030839507137 1 0.76505571603775 experiment 0.873938320985725 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:214325 chr11:214322 nonsynonymous SNV 0.999 3 18 hm5C_associated_SNPs_31923 0 0 1 0 1 RIC8A chr11:214230 3'AG 214230 Downstream 93bp
chr1 145663182 145663182 1 + G A READ 145663167 + 145663147 145663187 41 GGTCTTTACTAGCTTTGGGGCCATTTGGATCACACGATGTT GGTCTTTACTAGCTTTGGGGCCATTTGGATCACACAATGTT < 41bp 1 0.0220441443782624 1 0.0412339270114899 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF115 ENSG00000121848 CDS Human other chr1:145663167 chr1:145663182 synonymous SNV . 0 36 hm5C_associated_SNPs_31924 0 0 1 0 1 RNF115 chr1:145663159 3'AG 145663159 Downstream 24bp
chr1 145663182 145663182 1 + G A READ 145663168 + 145663148 145663188 41 GTCTTTACTAGCTTTGGGGCCATTTGGATCACACGATGTTT GTCTTTACTAGCTTTGGGGCCATTTGGATCACACAATGTTT < 41bp 1 0.0242630493699257 1 0.0626689195632935 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF115 ENSG00000121848 CDS Human other chr1:145663168 chr1:145663182 synonymous SNV . 0 35 hm5C_associated_SNPs_31925 0 0 1 0 1 RNF115 chr1:145663159 3'AG 145663159 Downstream 24bp
chr8 59483459 59483459 1 + T G READ 59483471 + 59483451 59483491 41 AACTGCTTTTTCTGCAAACCCTGCCAATCCAGCAATTTTGT AACTGCTTGTTCTGCAAACCCTGCCAATCCAGCAATTTTGT < 41bp 1 0.476288109354997 1 0.0304456353187561 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SDCBP ENSG00000137575 CDS Human protein_coding chr8:59483471 chr8:59483459 nonsynonymous SNV 0.964 1 9 hm5C_associated_SNPs_31926 0 0 1 0 2 SDCBP chr8:59483446 3'AG 59483446 Downstream 14bp
chr8 59483459 59483459 1 + T G READ 59483471 + 59483451 59483491 41 AACTGCTTTTTCTGCAAACCCTGCCAATCCAGCAATTTTGT AACTGCTTGTTCTGCAAACCCTGCCAATCCAGCAATTTTGT < 41bp 1 0.476288109354997 1 0.0304456353187561 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SDCBP ENSG00000137575 CDS Human protein_coding chr8:59483471 chr8:59483459 nonsynonymous SNV 0.964 1 9 hm5C_associated_SNPs_31926 0 0 1 0 2 SDCBP chr8:59483524 5'GT 59483524 Upstream 66bp
chr17 75494690 75494690 1 + G A READ 75494704 + 75494684 75494724 41 AGCAGCGCCATGGCCAACGGCATGGAGGAGAAGGAGCCAGA AGCAGCACCATGGCCAACGGCATGGAGGAGAAGGAGCCAGA < 41bp 1 0.419143785579974 1 0.226372420787811 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEPT9 ENSG00000184640 CDS Human protein_coding chr17:75494704 chr17:75494690 nonsynonymous SNV 0.334 0 7 hm5C_associated_SNPs_31927 0 0 1 0 1 SEPT9 chr17:75494605 3'AG 75494605 Downstream 86bp
chr9 131455933 131455933 1 + C T READ 131455929 + 131455909 131455949 41 TCATTTAGGATTTGACGAAACGTTCGAGTCAAACGCAGAAT TCATTTAGGATTTGACGAAACGTTTGAGTCAAACGCAGAAT < 41bp 1 0.16088944563862 1 0.0806401968002319 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SET ENSG00000119335 CDS Human protein_coding chr9:131455929 chr9:131455933 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_31928 0 0 1 0 1 SET chr9:131455917 3'AG 131455917 Downstream 17bp
chr9 131455933 131455933 1 + C T READ 131455942 + 131455922 131455962 41 GACGAAACGTTCGAGTCAAACGCAGAATAAAGCCAGCAGGA GACGAAACGTTTGAGTCAAACGCAGAATAAAGCCAGCAGGA < 41bp 1 0.75579608677584 1 0.555219411849976 experiment 0.488407826448321 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SET ENSG00000119335 CDS Human protein_coding chr9:131455942 chr9:131455933 nonsynonymous SNV 0.998 1 12 hm5C_associated_SNPs_31929 0 0 1 0 1 SET chr9:131455917 3'AG 131455917 Downstream 17bp
chr9 131455947 131455947 1 + A G READ 131455929 + 131455909 131455949 41 TCATTTAGGATTTGACGAAACGTTCGAGTCAAACGCAGAAT TCATTTAGGATTTGACGAAACGTTCGAGTCAAACGCAGGAT < 41bp 1 0.128668598578335 1 0.129589676856995 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SET ENSG00000119335 CDS Human protein_coding chr9:131455929 chr9:131455947 nonsynonymous SNV 0.998 1 39 hm5C_associated_SNPs_31930 0 0 1 1 1 SET chr9:131455917 3'AG 131455917 Downstream 31bp
chr2 235943704 235943704 1 + G A READ 235943692 + 235943672 235943712 41 CCAACTCCAATGGCCTCCCTCGCTGCAAGTCAGAGGGGACC CCAACTCCAATGGCCTCCCTCGCTGCAAGTCAAAGGGGACC < 41bp 1 0.222149744840994 1 0.203001111745834 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235943692 chr2:235943704 nonsynonymous SNV 0.995 4 33 hm5C_associated_SNPs_31931 0 0 1 0 1 SH3BP4 chr2:235943764 5'GT 235943764 Upstream 61bp
chr2 231327222 231327222 1 + G T READ 231327230 + 231327210 231327250 41 TCTCAGCACCGAGAAGTGAGCCTGGTAAGGAAGTTTGGGAG TCTCAGCACCGATAAGTGAGCCTGGTAAGGAAGTTTGGGAG < 41bp 1 0.393853756792165 1 0.372922480106354 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SP100 ENSG00000067066 CDS Human protein_coding chr2:231327230 chr2:231327222 nonsynonymous SNV 0.000 2 13 hm5C_associated_SNPs_31939 0 0 1 0 2 SP100 chr2:231327150 3'AG 231327150 Downstream 73bp
chr2 231327222 231327222 1 + G T READ 231327230 + 231327210 231327250 41 TCTCAGCACCGAGAAGTGAGCCTGGTAAGGAAGTTTGGGAG TCTCAGCACCGATAAGTGAGCCTGGTAAGGAAGTTTGGGAG < 41bp 1 0.393853756792165 1 0.372922480106354 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SP100 ENSG00000067066 CDS Human protein_coding chr2:231327230 chr2:231327222 nonsynonymous SNV 0.000 2 13 hm5C_associated_SNPs_31939 0 0 1 0 2 SP100 chr2:231327233 5'GT 231327233 Upstream 12bp
chr17 20163524 20163524 1 + C G READ 20163528 + 20163508 20163548 41 GGAAAGAAAAGACCCTCTGGCAGCCTTGGCCCGGGAATACG GGAAAGAAAAGACCCTGTGGCAGCCTTGGCCCGGGAATACG < 41bp 1 0.243709505032289 1 0.160536706447601 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20163528 chr17:20163524 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_31940 0 0 1 0 1 SPECC1 chr17:20163607 5'GT 20163607 Upstream 84bp
chr2 220350102 220350102 1 + C T READ 220350113 + 220350093 220350133 41 CCGCTGGGGCTTCTCTCGGCCGCGGAAGGACAAGGGGTTAT CCGCTGGGGTTTCTCTCGGCCGCGGAAGGACAAGGGGTTAT < 41bp 1 0.443291093202835 1 0.698075890541077 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220350113 chr2:220350102 synonymous SNV . 0 10 hm5C_associated_SNPs_31941 0 0 0 0 2 SPEG chr2:220350068 3'AG 220350068 Downstream 35bp
chr2 220350102 220350102 1 + C T READ 220350113 + 220350093 220350133 41 CCGCTGGGGCTTCTCTCGGCCGCGGAAGGACAAGGGGTTAT CCGCTGGGGTTTCTCTCGGCCGCGGAAGGACAAGGGGTTAT < 41bp 1 0.443291093202835 1 0.698075890541077 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220350113 chr2:220350102 synonymous SNV . 0 10 hm5C_associated_SNPs_31941 0 0 0 0 2 SPEG chr2:220350199 5'GT 220350199 Upstream 98bp
chr9 131345016 131345016 1 + G A READ 131345031 + 131345011 131345051 41 GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATCTGCAGC GCGTCACCGGGCCCAGCTAGCCGATTCTTTCCATCTGCAGC < 41bp 1 0.126981438347902 1 0.11270147562027 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131345031 chr9:131345016 nonsynonymous SNV 0.991 4 6 hm5C_associated_SNPs_31942 0 0 1 0 1 SPTAN1 chr9:131344973 3'AG 131344973 Downstream 44bp
chr22 42280875 42280875 1 + G T READ 42280873 + 42280853 42280893 41 TCCTGCAGGATCCGCCTGTTCCGATGTACACATGGCGTTGT TCCTGCAGGATCCGCCTGTTCCTATGTACACATGGCGTTGT < 41bp 1 0.100089012737509 1 0.0580759942531586 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42280873 chr22:42280875 nonsynonymous SNV 0.963 3 23 hm5C_associated_SNPs_31943 0 0 1 0 1 SREBF2 chr22:42280846 3'AG 42280846 Downstream 30bp
chr12 104056703 104056703 1 + G T READ 104056683 + 104056663 104056703 41 GAGATCACTGCCAAAAATGGCCGAATTTACACACTGACAGG GAGATCACTGCCAAAAATGGCCGAATTTACACACTGACAGT < 41bp 1 0.164258632313046 1 0.231939345598221 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient STAB2 ENSG00000136011 CDS Human protein_coding chr12:104056683 chr12:104056703 nonsynonymous SNV 0.913 5 41 hm5C_associated_SNPs_31944 0 0 0 0 2 STAB2 chr12:104056624 3'AG 104056624 Downstream 80bp
chr12 104056703 104056703 1 + G T READ 104056683 + 104056663 104056703 41 GAGATCACTGCCAAAAATGGCCGAATTTACACACTGACAGG GAGATCACTGCCAAAAATGGCCGAATTTACACACTGACAGT < 41bp 1 0.164258632313046 1 0.231939345598221 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient STAB2 ENSG00000136011 CDS Human protein_coding chr12:104056683 chr12:104056703 nonsynonymous SNV 0.913 5 41 hm5C_associated_SNPs_31944 0 0 0 0 2 STAB2 chr12:104056776 5'GT 104056776 Upstream 74bp
chr19 15222232 15222232 1 + G A READ 15222222 + 15222202 15222242 41 GCGGTCTGCCTATCTGAGGACCTGTACCCCGATATCAATGT GCGGTCTGCCTATCTGAGGACCTGTACCCCAATATCAATGT < 41bp 1 0.0590084381385809 1 0.0266901552677155 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15222222 chr19:15222232 nonsynonymous SNV 0.993 4 31 hm5C_associated_SNPs_31945 0 0 0 0 1 SYDE1 chr19:15222250 5'GT 15222250 Upstream 19bp
chr14 64445700 64445700 1 + G T READ 64445696 + 64445676 64445716 41 TGGAACATTAAATATGGGAGCAGAGAATCTGTGGAATTATT TGGAACATTAAATATGGGAGCAGATAATCTGTGGAATTATT < 41bp 1 0.0534166451705512 1 0.228497564792633 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64445696 chr14:64445700 stopgain 0.983 0 25 hm5C_associated_SNPs_31946 0 0 1 0 1 SYNE2 chr14:64445732 5'GT 64445732 Upstream 33bp
chr12 64878186 64878186 1 + C T READ 64878177 + 64878157 64878197 41 GGCGACGCTTAGTCTTAGAACCTGGAAGGCTGGCACAACAT GGCGACGCTTAGTCTTAGAACCTGGAAGGTTGGCACAACAT < 41bp 1 0.311678560896627 1 0.366330921649933 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBK1 ENSG00000183735 CDS Human protein_coding chr12:64878177 chr12:64878186 synonymous SNV . 0 30 hm5C_associated_SNPs_31948 0 0 1 0 1 TBK1 chr12:64878279 5'GT 64878279 Upstream 94bp
chr13 61084006 61084006 1 + T A READ 61083991 + 61083971 61084011 41 TAATGGCAACAACTTAGAAGCAGCACTGAACGTACTTCTTA TAATGGCAACAACTTAGAAGCAGCACTGAACGTACATCTTA < 41bp 1 0.754272298376404 1 0.270718812942505 experiment 0.491455403247192 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61083991 chr13:61084006 nonsynonymous SNV 0.986 4 36 hm5C_associated_SNPs_31949 0 0 1 0 1 TDRD3 chr13:61084053 5'GT 61084053 Upstream 48bp
chr1 156255360 156255360 1 + G A READ 156255378 + 156255358 156255398 41 CCGAAGACGATGCCAACCTGCTGCCTGAGAAAGCGGCCCGT CCAAAGACGATGCCAACCTGCTGCCTGAGAAAGCGGCCCGT < 41bp 1 0.360567608035976 1 0.12798735499382 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM79 ENSG00000163472 CDS Human protein_coding chr1:156255378 chr1:156255360 nonsynonymous SNV 0.050 0 3 hm5C_associated_SNPs_31951 0 0 0 0 1 TMEM79 chr1:156255316 3'AG 156255316 Downstream 45bp
chr16 24826591 24826591 1 + C T READ 24826598 + 24826578 24826618 41 CCACGTGCCAAATCGCCTAACGGCTCTAGCAGTGTTAATTG CCACGTGCCAAATTGCCTAACGGCTCTAGCAGTGTTAATTG < 41bp 1 0.406849648736878 1 0.075310617685318 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24826598 chr16:24826591 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_31952 0 0 1 0 1 TNRC6A chr16:24826626 5'GT 24826626 Upstream 36bp
chr20 368896 368896 1 + G A READ 368903 + 368883 368923 41 GAGGAGGGCGGGCGGGCCTACCAGGCCCTGCACTGCCCTAC GAGGAGGGCGGGCAGGCCTACCAGGCCCTGCACTGCCCTAC < 41bp 1 0.650734400522732 1 0.722356677055359 experiment 0.698531198954536 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIB3 ENSG00000101255 CDS Human protein_coding chr20:368903 chr20:368896 nonsynonymous SNV 0.002 0 14 hm5C_associated_SNPs_31953 0 0 1 0 1 TRIB3 chr20:368945 5'GT 368945 Upstream 50bp
chr20 368896 368896 1 + G A READ 368904 + 368884 368924 41 AGGAGGGCGGGCGGGCCTACCAGGCCCTGCACTGCCCTACA AGGAGGGCGGGCAGGCCTACCAGGCCCTGCACTGCCCTACA < 41bp 1 0.769933730312487 1 0.940690159797668 experiment 0.460132539375026 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIB3 ENSG00000101255 CDS Human protein_coding chr20:368904 chr20:368896 nonsynonymous SNV 0.002 0 13 hm5C_associated_SNPs_31954 0 0 1 0 1 TRIB3 chr20:368945 5'GT 368945 Upstream 50bp
chr2 47233826 47233826 1 + G A READ 47233842 + 47233822 47233862 41 CTTTGGTACCAGGTGGCCCTCTCCATGGTGGCTTGTGGGAA CTTTAGTACCAGGTGGCCCTCTCCATGGTGGCTTGTGGGAA < 41bp 1 0.751248300483914 1 0.973280012607574 experiment 0.497503399032171 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47233842 chr2:47233826 stopgain 1.000 1 5 hm5C_associated_SNPs_31960 0 0 1 0 2 TTC7A chr2:47233780 3'AG 47233780 Downstream 47bp
chr2 47233826 47233826 1 + G A READ 47233842 + 47233822 47233862 41 CTTTGGTACCAGGTGGCCCTCTCCATGGTGGCTTGTGGGAA CTTTAGTACCAGGTGGCCCTCTCCATGGTGGCTTGTGGGAA < 41bp 1 0.751248300483914 1 0.973280012607574 experiment 0.497503399032171 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47233842 chr2:47233826 stopgain 1.000 1 5 hm5C_associated_SNPs_31960 0 0 1 0 2 TTC7A chr2:47233863 5'GT 47233863 Upstream 38bp
chr2 113260544 113260544 1 + C A READ 113260557 + 113260537 113260577 41 GGGTGTGCTTCGGACTGCTTCAGAACCATATCATGTTGATA GGGTGTGATTCGGACTGCTTCAGAACCATATCATGTTGATA < 41bp 1 0.520886723950539 1 0.702484130859375 experiment 0.958226552098921 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113260557 chr2:113260544 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_31961 0 0 1 0 1 TTL chr2:113260489 3'AG 113260489 Downstream 56bp
chr7 2686577 2686577 1 + C T READ 2686570 + 2686550 2686590 41 TTCTACTCCTTCTGGCTGTGCTGCCGGCGGCGCAAGAGCGA TTCTACTCCTTCTGGCTGTGCTGCCGGTGGCGCAAGAGCGA < 41bp 1 0.353949127043968 1 0.398040890693665 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686570 chr7:2686577 nonsynonymous SNV 0.994 3 28 hm5C_associated_SNPs_31962 0 0 1 0 2 TTYH3 chr7:2686487 3'AG 2686487 Downstream 91bp
chr7 2686577 2686577 1 + C T READ 2686570 + 2686550 2686590 41 TTCTACTCCTTCTGGCTGTGCTGCCGGCGGCGCAAGAGCGA TTCTACTCCTTCTGGCTGTGCTGCCGGTGGCGCAAGAGCGA < 41bp 1 0.353949127043968 1 0.398040890693665 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686570 chr7:2686577 nonsynonymous SNV 0.994 3 28 hm5C_associated_SNPs_31962 0 0 1 0 2 TTYH3 chr7:2686656 5'GT 2686656 Upstream 80bp
chr4 39757308 39757308 1 + A G READ 39757323 + 39757303 39757343 41 TCCTAATATTAGTTCCGTCACAGGGGCTATTTGTTTGGATA TCCTAGTATTAGTTCCGTCACAGGGGCTATTTGTTTGGATA < 41bp 1 0.797499406271081 1 0.758583545684814 experiment 0.405001187457839 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBE2K ENSG00000078140 CDS Human protein_coding chr4:39757323 chr4:39757308 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_31963 0 0 1 1 2 UBE2K chr4:39757277 3'AG 39757277 Downstream 32bp
chr4 39757308 39757308 1 + A G READ 39757323 + 39757303 39757343 41 TCCTAATATTAGTTCCGTCACAGGGGCTATTTGTTTGGATA TCCTAGTATTAGTTCCGTCACAGGGGCTATTTGTTTGGATA < 41bp 1 0.797499406271081 1 0.758583545684814 experiment 0.405001187457839 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBE2K ENSG00000078140 CDS Human protein_coding chr4:39757323 chr4:39757308 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_31963 0 0 1 1 2 UBE2K chr4:39757359 5'GT 39757359 Upstream 52bp
chr4 39757335 39757335 1 + G A READ 39757323 + 39757303 39757343 41 TCCTAATATTAGTTCCGTCACAGGGGCTATTTGTTTGGATA TCCTAATATTAGTTCCGTCACAGGGGCTATTTATTTGGATA < 41bp 1 0.7860341748775 1 0.683497071266174 experiment 0.427931650245 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBE2K ENSG00000078140 CDS Human protein_coding chr4:39757323 chr4:39757335 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_31964 0 0 1 0 2 UBE2K chr4:39757277 3'AG 39757277 Downstream 59bp
chr4 39757335 39757335 1 + G A READ 39757323 + 39757303 39757343 41 TCCTAATATTAGTTCCGTCACAGGGGCTATTTGTTTGGATA TCCTAATATTAGTTCCGTCACAGGGGCTATTTATTTGGATA < 41bp 1 0.7860341748775 1 0.683497071266174 experiment 0.427931650245 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBE2K ENSG00000078140 CDS Human protein_coding chr4:39757323 chr4:39757335 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_31964 0 0 1 0 2 UBE2K chr4:39757359 5'GT 39757359 Upstream 25bp
chr1 10165584 10165584 1 + T G READ 10165581 + 10165561 10165601 41 GCCTTTCCAACAGTATTCTCCGATTTTAAGGACTTGATTGG GCCTTTCCAACAGTATTCTCCGAGTTTAAGGACTTGATTGG < 41bp 1 0.286369288740764 1 0.308280736207962 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBE4B ENSG00000130939 CDS Human protein_coding chr1:10165581 chr1:10165584 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_31965 0 0 1 0 1 UBE4B chr1:10165574 3'AG 10165574 Downstream 11bp
chr16 23578364 23578364 1 + G A READ 23578358 + 23578338 23578378 41 TAAAAAATGTGGTCAGTGAACCTATCGAAGGACATGAAGAC TAAAAAATGTGGTCAGTGAACCTATCAAAGGACATGAAGAC < 41bp 1 0.0694123561572772 1 0.0969356298446655 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBFD1 ENSG00000103353 CDS Human protein_coding chr16:23578358 chr16:23578364 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_31966 0 0 1 0 2 UBFD1 chr16:23578308 3'AG 23578308 Downstream 57bp
chr16 23578364 23578364 1 + G A READ 23578358 + 23578338 23578378 41 TAAAAAATGTGGTCAGTGAACCTATCGAAGGACATGAAGAC TAAAAAATGTGGTCAGTGAACCTATCAAAGGACATGAAGAC < 41bp 1 0.0694123561572772 1 0.0969356298446655 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBFD1 ENSG00000103353 CDS Human protein_coding chr16:23578358 chr16:23578364 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_31966 0 0 1 0 2 UBFD1 chr16:23578390 5'GT 23578390 Upstream 27bp
chr9 35396474 35396474 1 + G A READ 35396475 + 35396455 35396495 41 CTTTCTCCCTACCACTAGAGCATGAGAAAGACCACCTGTGT CTTTCTCCCTACCACTAGAACATGAGAAAGACCACCTGTGT < 41bp 1 0.375427168843348 1 0.316778481006622 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UNC13B ENSG00000198722 CDS Human protein_coding chr9:35396475 chr9:35396474 synonymous SNV . 0 20 hm5C_associated_SNPs_31967 0 0 0 0 1 UNC13B chr9:35396473 3'AG 35396473 Downstream 2bp
chr1 46775975 46775975 1 + C T READ 46775983 + 46775963 46776003 41 ACTTCTTGCATGCGAGGGACCATTGCGTAAGTCAGTGGGAA ACTTCTTGCATGTGAGGGACCATTGCGTAAGTCAGTGGGAA < 41bp 1 0.210131060217676 1 0.178663730621338 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UQCRH ENSG00000173660 CDS Human protein_coding chr1:46775983 chr1:46775975 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_31968 0 0 1 0 1 UQCRH chr1:46775988 5'GT 46775988 Upstream 14bp
chrX 48457274 48457274 1 + G A READ 48457256 + 48457236 48457276 41 GGGGGCAGCTGCTGGGCCAGCGCTACGGGCCCCTCTCCGAG GGGGGCAGCTGCTGGGCCAGCGCTACGGGCCCCTCTCCAAG < 41bp 1 0.734101759963307 1 0.333358347415924 experiment 0.531796480073386 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457256 chrX:48457274 nonsynonymous SNV 0.936 1 39 hm5C_associated_SNPs_31969 0 0 1 0 1 WDR13 chrX:48457345 5'GT 48457345 Upstream 72bp
chrX 48457274 48457274 1 + G A READ 48457272 + 48457252 48457292 41 CCAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTG CCAGCGCTACGGGCCCCTCTCCAAGCCAGGCAGTGCTCGTG < 41bp 1 0.545788418084406 1 0.863923907279968 experiment 0.908423163831187 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457272 chrX:48457274 nonsynonymous SNV 0.936 1 23 hm5C_associated_SNPs_31970 0 0 1 0 1 WDR13 chrX:48457345 5'GT 48457345 Upstream 72bp
chrX 48457274 48457274 1 + G A READ 48457273 + 48457253 48457293 41 CAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTGC CAGCGCTACGGGCCCCTCTCCAAGCCAGGCAGTGCTCGTGC < 41bp 1 0.60917703672331 1 0.312469452619553 experiment 0.781645926553379 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457273 chrX:48457274 nonsynonymous SNV 0.936 1 22 hm5C_associated_SNPs_31971 0 0 1 0 1 WDR13 chrX:48457345 5'GT 48457345 Upstream 72bp
chr2 220072092 220072092 1 + C T READ 220072099 + 220072079 220072119 41 CAGGCATCTTCTGCGCAGACCATGTGGCCTACGCCCAGCAT CAGGCATCTTCTGTGCAGACCATGTGGCCTACGCCCAGCAT < 41bp 1 0.335474960391293 1 0.291888982057571 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFAND2B ENSG00000158552 CDS Human protein_coding chr2:220072099 chr2:220072092 synonymous SNV . 0 14 hm5C_associated_SNPs_31978 0 0 1 0 2 ZFAND2B chr2:220072049 3'AG 220072049 Downstream 44bp
chr2 220072092 220072092 1 + C T READ 220072099 + 220072079 220072119 41 CAGGCATCTTCTGCGCAGACCATGTGGCCTACGCCCAGCAT CAGGCATCTTCTGTGCAGACCATGTGGCCTACGCCCAGCAT < 41bp 1 0.335474960391293 1 0.291888982057571 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFAND2B ENSG00000158552 CDS Human protein_coding chr2:220072099 chr2:220072092 synonymous SNV . 0 14 hm5C_associated_SNPs_31978 0 0 1 0 2 ZFAND2B chr2:220072143 5'GT 220072143 Upstream 52bp
chr5 140084144 140084144 1 + G A READ 140084145 + 140084125 140084165 41 TTGAGGAAAGGATGAAGGAGCTCAGAGAAGAGGTAAGGGTC TTGAGGAAAGGATGAAGGAACTCAGAGAAGAGGTAAGGGTC < 41bp 1 0.629433290745679 1 0.490558117628098 experiment 0.741133418508642 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084145 chr5:140084144 synonymous SNV . 0 20 hm5C_associated_SNPs_31980 0 0 1 0 1 ZMAT2 chr5:140084156 5'GT 140084156 Upstream 13bp
chr1 228451874 228451874 1 + C T SARC 228451881 + 228451861 228451901 41 GTGCAGGCTGAGGCGGGGACCAGTGCCACGCTGAGCTGCGA GTGCAGGCTGAGGTGGGGACCAGTGCCACGCTGAGCTGCGA < 41bp 1 0.101575330163382 1 0.647727191448212 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228451881 chr1:228451874 nonsynonymous SNV 0.000 0 14 hm5C_associated_SNPs_31988 0 0 0 0 1 OBSCN chr1:228451817 3'AG 228451817 Downstream 58bp
chr17 28747895 28747895 1 + G T SARC 28747907 + 28747887 28747927 41 GGCCAACTGTTTTGAGATCACATTAGAACTGTCTTGTTGCA GGCCAACTTTTTTGAGATCACATTAGAACTGTCTTGTTGCA < 41bp 1 0.300240525300903 1 0.0665839910507202 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28747907 chr17:28747895 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_31989 0 0 1 1 1 CPD chr17:28747859 3'AG 28747859 Downstream 37bp
chr22 25019094 25019094 1 + G C SARC 25019089 + 25019069 25019109 41 TGCAGGGGGCATTGTGACAGCTGAGGACCTGAACAACTACC TGCAGGGGGCATTGTGACAGCTGAGCACCTGAACAACTACC < 41bp 1 0.459678303500156 1 0.365133166313171 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GGT1 ENSG00000100031 CDS Human protein_coding chr22:25019089 chr22:25019094 nonsynonymous SNV 0.841 3 26 hm5C_associated_SNPs_31990 0 0 1 0 1 GGT1 chr22:25019074 3'AG 25019074 Downstream 21bp
chr5 156816277 156816277 1 + G T SARC 156816259 + 156816239 156816279 41 CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTGAC CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTTAC < 41bp 1 0.310483750683135 1 0.481935024261475 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816259 chr5:156816277 synonymous SNV . 0 39 hm5C_associated_SNPs_31991 0 0 1 0 1 CYFIP2 chr5:156816197 3'AG 156816197 Downstream 81bp
chr5 73045768 73045768 1 + C T SARC 73045760 + 73045740 73045780 41 GGATCTCATCAGCGACATGTCATGATTGCAGAGCGCATCGA GGATCTCATCAGCGACATGTCATGATTGTAGAGCGCATCGA < 41bp 1 0.720074914995675 1 0.0716180503368378 experiment 0.559850170008651 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF28 ENSG00000214944 CDS Human protein_coding chr5:73045760 chr5:73045768 nonsynonymous SNV 0.082 2 29 hm5C_associated_SNPs_31992 0 0 1 0 1 ARHGEF28 chr5:73045809 5'GT 73045809 Upstream 42bp
chr7 142460339 142460339 1 + G A SARC 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTATGAA < 41bp 1 0.462889946037919 1 0.0747100412845612 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460339 nonsynonymous SNV 0.067 5 37 hm5C_associated_SNPs_31993 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 58bp
chr7 142460339 142460339 1 + G A SARC 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTATGAA < 41bp 1 0.462889946037919 1 0.0747100412845612 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460339 nonsynonymous SNV 0.067 5 37 hm5C_associated_SNPs_31993 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 80bp
chr7 142460339 142460339 1 + G A SARC 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTATGAAGCCTC < 41bp 1 0.338059644594158 1 0.246099472045898 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460339 nonsynonymous SNV 0.067 5 32 hm5C_associated_SNPs_31994 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 58bp
chr7 142460339 142460339 1 + G A SARC 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTATGAAGCCTC < 41bp 1 0.338059644594158 1 0.246099472045898 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460339 nonsynonymous SNV 0.067 5 32 hm5C_associated_SNPs_31994 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 80bp
chr7 142460339 142460339 1 + G A SARC 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTCCTGTGCTGAGCCAGGCTAAGTATGAAGCCTCC < 41bp 1 0.569470485508842 1 0.734101295471191 experiment 0.861059028982315 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460339 nonsynonymous SNV 0.067 5 31 hm5C_associated_SNPs_31995 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 58bp
chr7 142460339 142460339 1 + G A SARC 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTCCTGTGCTGAGCCAGGCTAAGTATGAAGCCTCC < 41bp 1 0.569470485508842 1 0.734101295471191 experiment 0.861059028982315 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460339 nonsynonymous SNV 0.067 5 31 hm5C_associated_SNPs_31995 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 80bp
chr7 142460339 142460339 1 + G A SARC 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTGTGCTGAGCCAGGCTAAGTATGAAGCCTCCTACC < 41bp 1 0.407794787903693 1 0.0870877206325531 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460339 nonsynonymous SNV 0.067 5 27 hm5C_associated_SNPs_31996 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 58bp
chr7 142460339 142460339 1 + G A SARC 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTGTGCTGAGCCAGGCTAAGTATGAAGCCTCCTACC < 41bp 1 0.407794787903693 1 0.0870877206325531 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460339 nonsynonymous SNV 0.067 5 27 hm5C_associated_SNPs_31996 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 80bp
chr7 142460339 142460339 1 + G A SARC 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAGCCAGGCTAAGTATGAAGCCTCCTACCCTGGAAAGATTA < 41bp 1 0.0390470585123761 1 0.0974368751049042 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460339 nonsynonymous SNV 0.067 5 15 hm5C_associated_SNPs_31997 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 58bp
chr7 142460339 142460339 1 + G A SARC 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAGCCAGGCTAAGTATGAAGCCTCCTACCCTGGAAAGATTA < 41bp 1 0.0390470585123761 1 0.0974368751049042 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460339 nonsynonymous SNV 0.067 5 15 hm5C_associated_SNPs_31997 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 80bp
chr7 142460339 142460339 1 + G A SARC 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AGCCAGGCTAAGTATGAAGCCTCCTACCCTGGAAAGATTAC < 41bp 1 0.201225666224626 1 0.376185148954391 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460339 nonsynonymous SNV 0.067 5 14 hm5C_associated_SNPs_31998 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 58bp
chr7 142460339 142460339 1 + G A SARC 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AGCCAGGCTAAGTATGAAGCCTCCTACCCTGGAAAGATTAC < 41bp 1 0.201225666224626 1 0.376185148954391 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460339 nonsynonymous SNV 0.067 5 14 hm5C_associated_SNPs_31998 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 80bp
chr7 142460339 142460339 1 + G A SARC 142460348 + 142460328 142460368 41 CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA CCAGGCTAAGTATGAAGCCTCCTACCCTGGAAAGATTACCA < 41bp 1 0.0160041715150711 1 0.0975205898284912 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460348 chr7:142460339 nonsynonymous SNV 0.067 5 12 hm5C_associated_SNPs_31999 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 58bp
chr7 142460339 142460339 1 + G A SARC 142460348 + 142460328 142460368 41 CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA CCAGGCTAAGTATGAAGCCTCCTACCCTGGAAAGATTACCA < 41bp 1 0.0160041715150711 1 0.0975205898284912 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460348 chr7:142460339 nonsynonymous SNV 0.067 5 12 hm5C_associated_SNPs_31999 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 80bp
chr7 142460339 142460339 1 + G A SARC 142460349 + 142460329 142460369 41 CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG CAGGCTAAGTATGAAGCCTCCTACCCTGGAAAGATTACCAG < 41bp 1 0.206453748140861 1 0.267307877540588 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460349 chr7:142460339 nonsynonymous SNV 0.067 5 11 hm5C_associated_SNPs_32000 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 58bp
chr7 142460339 142460339 1 + G A SARC 142460349 + 142460329 142460369 41 CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG CAGGCTAAGTATGAAGCCTCCTACCCTGGAAAGATTACCAG < 41bp 1 0.206453748140861 1 0.267307877540588 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460349 chr7:142460339 nonsynonymous SNV 0.067 5 11 hm5C_associated_SNPs_32000 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 80bp
chr7 142460339 142460339 1 + G A SARC 142460352 + 142460332 142460372 41 GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA GCTAAGTATGAAGCCTCCTACCCTGGAAAGATTACCAGCAA < 41bp 1 0.329750987194574 1 0.465885818004608 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460352 chr7:142460339 nonsynonymous SNV 0.067 5 8 hm5C_associated_SNPs_32001 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 58bp
chr7 142460339 142460339 1 + G A SARC 142460352 + 142460332 142460372 41 GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA GCTAAGTATGAAGCCTCCTACCCTGGAAAGATTACCAGCAA < 41bp 1 0.329750987194574 1 0.465885818004608 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460352 chr7:142460339 nonsynonymous SNV 0.067 5 8 hm5C_associated_SNPs_32001 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 80bp
chr7 142460339 142460339 1 + G A SARC 142460353 + 142460333 142460373 41 CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC CTAAGTATGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC < 41bp 1 0.338256384027174 1 0.581249713897705 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460353 chr7:142460339 nonsynonymous SNV 0.067 5 7 hm5C_associated_SNPs_32002 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 58bp
chr7 142460339 142460339 1 + G A SARC 142460353 + 142460333 142460373 41 CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC CTAAGTATGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC < 41bp 1 0.338256384027174 1 0.581249713897705 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460353 chr7:142460339 nonsynonymous SNV 0.067 5 7 hm5C_associated_SNPs_32002 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 80bp
chr7 142460339 142460339 1 + G A SARC 142460354 + 142460334 142460374 41 TAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAACA TAAGTATGAAGCCTCCTACCCTGGAAAGATTACCAGCAACA < 41bp 1 0.774690415261103 1 0.504006743431091 experiment 0.450619169477793 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460354 chr7:142460339 nonsynonymous SNV 0.067 5 6 hm5C_associated_SNPs_32003 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 58bp
chr7 142460339 142460339 1 + G A SARC 142460354 + 142460334 142460374 41 TAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAACA TAAGTATGAAGCCTCCTACCCTGGAAAGATTACCAGCAACA < 41bp 1 0.774690415261103 1 0.504006743431091 experiment 0.450619169477793 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460354 chr7:142460339 nonsynonymous SNV 0.067 5 6 hm5C_associated_SNPs_32003 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 80bp
chr1 45479716 45479716 1 + G T SARC 45479707 + 45479687 45479727 41 TCCTCACTGATGCTCTGGTCCCATATCTGGTAGGACAAGTG TCCTCACTGATGCTCTGGTCCCATATCTGTTAGGACAAGTG < 41bp 1 0.236288993671308 1 0.0456165969371796 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UROD ENSG00000126088 CDS Human protein_coding chr1:45479707 chr1:45479716 nonsynonymous SNV 0.996 2 30 hm5C_associated_SNPs_32011 0 0 1 0 1 UROD chr1:45479742 5'GT 45479742 Upstream 27bp
chr1 45479716 45479716 1 + G T SARC 45479708 + 45479688 45479728 41 CCTCACTGATGCTCTGGTCCCATATCTGGTAGGACAAGTGG CCTCACTGATGCTCTGGTCCCATATCTGTTAGGACAAGTGG < 41bp 1 0.250115107004638 1 0.257174015045166 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UROD ENSG00000126088 CDS Human protein_coding chr1:45479708 chr1:45479716 nonsynonymous SNV 0.996 2 29 hm5C_associated_SNPs_32012 0 0 1 0 1 UROD chr1:45479742 5'GT 45479742 Upstream 27bp
chr4 56291555 56291555 1 + G T SARC 56291562 + 56291542 56291582 41 GTGACAATCATAGGAGGCATCGTTTTTTTGGCGTTTGCATT GTGACAATCATAGTAGGCATCGTTTTTTTGGCGTTTGCATT < 41bp 1 0.0890240837740452 1 0.105803906917572 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TMEM165 ENSG00000134851 CDS Human protein_coding chr4:56291562 chr4:56291555 nonsynonymous SNV 1.000 5 14 hm5C_associated_SNPs_32013 0 0 1 0 1 TMEM165 chr4:56291543 3'AG 56291543 Downstream 13bp
chr17 7983209 7983209 1 + G T SARC 7983202 + 7983182 7983222 41 GGATCAGGCCGGGGTTGACGCCGTTGAGGTACTGGTACCCA GGATCAGGCCGGGGTTGACGCCGTTGATGTACTGGTACCCA < 41bp 1 0.369764627385016 1 0.0826844871044159 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALOX12B ENSG00000179477 CDS Human protein_coding chr17:7983202 chr17:7983209 nonsynonymous SNV 1.000 5 28 hm5C_associated_SNPs_32014 0 0 0 0 1 ALOX12B chr17:7983123 3'AG 7983123 Downstream 87bp
chr2 28812626 28812626 1 + T A SARC 28812615 + 28812595 28812635 41 CAAGTCTCACTCCCGAGCAGCCAGTGCTCTCTGGAACAATA CAAGTCTCACTCCCGAGCAGCCAGTGCTCTCAGGAACAATA < 41bp 1 0.0459470041817139 1 0.0317780673503876 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PLB1 ENSG00000163803 CDS Human protein_coding chr2:28812615 chr2:28812626 nonsynonymous SNV 0.463 4 32 hm5C_associated_SNPs_32015 0 0 0 0 2 PLB1 chr2:28812542 3'AG 28812542 Downstream 85bp
chr2 28812626 28812626 1 + T A SARC 28812615 + 28812595 28812635 41 CAAGTCTCACTCCCGAGCAGCCAGTGCTCTCTGGAACAATA CAAGTCTCACTCCCGAGCAGCCAGTGCTCTCAGGAACAATA < 41bp 1 0.0459470041817139 1 0.0317780673503876 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PLB1 ENSG00000163803 CDS Human protein_coding chr2:28812615 chr2:28812626 nonsynonymous SNV 0.463 4 32 hm5C_associated_SNPs_32015 0 0 0 0 2 PLB1 chr2:28812637 5'GT 28812637 Upstream 12bp
chr12 52370292 52370292 1 + G T SARC 52370279 + 52370259 52370299 41 GAGACTGGACATGGAAGATCCCTCATGTGAGATGTGTCTCT GAGACTGGACATGGAAGATCCCTCATGTGAGATTTGTCTCT < 41bp 1 0.249924327210651 1 0.489091694355011 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52370279 chr12:52370292 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_32016 0 0 1 0 1 ACVR1B chr12:52370359 5'GT 52370359 Upstream 68bp
chr7 134215401 134215401 1 + C G SARC 134215396 + 134215376 134215416 41 CTTTTCTTTTGCCTTTCAGTCTCCTCTTGGCAAAGTGAAAG CTTTTCTTTTGCCTTTCAGTCTCCTGTTGGCAAAGTGAAAG < 41bp 1 0.36388034073358 1 0.426388680934906 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134215396 chr7:134215401 nonsynonymous SNV 0.000 2 26 hm5C_associated_SNPs_32022 0 0 0 0 1 AKR1B10 chr7:134215395 3'AG 134215395 Downstream 7bp
chr1 145368529 145368529 1 + G C SARC 145368536 + 145368516 145368556 41 GTCAATGTACTTTGAACTACCTGACTCATTCCAGCACTACA GTCAATGTACTTTCAACTACCTGACTCATTCCAGCACTACA < 41bp 1 0.0710505099374868 1 0.10968229174614 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBPF9 ENSG00000163386 CDS Human other chr1:145368536 chr1:145368529 nonsynonymous SNV . 0 14 hm5C_associated_SNPs_32028 0 0 0 0 1 NBPF9 chr1:145368441 3'AG 145368441 Downstream 89bp
chr1 145368529 145368529 1 + G C SARC 145368540 + 145368520 145368560 41 ATGTACTTTGAACTACCTGACTCATTCCAGCACTACAGAAG ATGTACTTTCAACTACCTGACTCATTCCAGCACTACAGAAG < 41bp 1 0.073766904886881 1 0.0731031894683838 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NBPF9 ENSG00000163386 CDS Human other chr1:145368540 chr1:145368529 nonsynonymous SNV . 0 10 hm5C_associated_SNPs_32029 0 0 0 0 1 NBPF9 chr1:145368441 3'AG 145368441 Downstream 89bp
chr8 22064428 22064428 1 + C T SARC 22064413 + 22064393 22064433 41 ACCAGTGGTACCATCACCAGCCCCAACTGGCCTGACAAGTA ACCAGTGGTACCATCACCAGCCCCAACTGGCCTGATAAGTA < 41bp 1 0.175896161513726 1 0.529693901538849 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22064413 chr8:22064428 synonymous SNV . 0 36 hm5C_associated_SNPs_32030 0 0 1 0 2 BMP1 chr8:22064367 3'AG 22064367 Downstream 62bp
chr8 22064428 22064428 1 + C T SARC 22064413 + 22064393 22064433 41 ACCAGTGGTACCATCACCAGCCCCAACTGGCCTGACAAGTA ACCAGTGGTACCATCACCAGCCCCAACTGGCCTGATAAGTA < 41bp 1 0.175896161513726 1 0.529693901538849 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22064413 chr8:22064428 synonymous SNV . 0 36 hm5C_associated_SNPs_32030 0 0 1 0 2 BMP1 chr8:22064494 5'GT 22064494 Upstream 67bp
chr17 40714724 40714724 1 + G A SARC 40714704 + 40714684 40714724 41 TGGCCTCCCTAGCCCCTCGCCTGGCCTCCATCCTGACCTCG TGGCCTCCCTAGCCCCTCGCCTGGCCTCCATCCTGACCTCA < 41bp 1 0.545387121572736 1 0.433656394481659 experiment 0.909225756854528 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COASY ENSG00000068120 CDS Human protein_coding chr17:40714704 chr17:40714724 synonymous SNV . 0 41 hm5C_associated_SNPs_32031 0 0 1 0 1 COASY chr17:40714630 3'AG 40714630 Downstream 95bp
chr11 993358 993358 1 + G C SARC 993371 + 993351 993391 41 GAAACTTGATAGCTGGAGACCCGAGATCCAGGTGAGAGGCC GAAACTTCATAGCTGGAGACCCGAGATCCAGGTGAGAGGCC < 41bp 1 0.1934351863576 1 0.543855428695679 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:993371 chr11:993358 nonsynonymous SNV 0.990 4 8 hm5C_associated_SNPs_32034 0 0 1 1 2 AP2A2 chr11:993284 3'AG 993284 Downstream 75bp
chr11 993358 993358 1 + G C SARC 993371 + 993351 993391 41 GAAACTTGATAGCTGGAGACCCGAGATCCAGGTGAGAGGCC GAAACTTCATAGCTGGAGACCCGAGATCCAGGTGAGAGGCC < 41bp 1 0.1934351863576 1 0.543855428695679 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:993371 chr11:993358 nonsynonymous SNV 0.990 4 8 hm5C_associated_SNPs_32034 0 0 1 1 2 AP2A2 chr11:993381 5'GT 993381 Upstream 24bp
chr11 993375 993375 1 + G C SARC 993371 + 993351 993391 41 GAAACTTGATAGCTGGAGACCCGAGATCCAGGTGAGAGGCC GAAACTTGATAGCTGGAGACCCGACATCCAGGTGAGAGGCC < 41bp 1 0.0863257435265602 1 0.594800889492035 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:993371 chr11:993375 nonsynonymous SNV 0.223 3 25 hm5C_associated_SNPs_32035 0 0 1 2 2 AP2A2 chr11:993284 3'AG 993284 Downstream 92bp
chr11 993375 993375 1 + G C SARC 993371 + 993351 993391 41 GAAACTTGATAGCTGGAGACCCGAGATCCAGGTGAGAGGCC GAAACTTGATAGCTGGAGACCCGACATCCAGGTGAGAGGCC < 41bp 1 0.0863257435265602 1 0.594800889492035 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:993371 chr11:993375 nonsynonymous SNV 0.223 3 25 hm5C_associated_SNPs_32035 0 0 1 2 2 AP2A2 chr11:993381 5'GT 993381 Upstream 7bp
chr17 57737919 57737919 1 + G T SARC 57737924 + 57737904 57737944 41 GGGAAATTACTCGGAGGCAGCAAAGGTGGCTGCTAATGCAC GGGAAATTACTCGGATGCAGCAAAGGTGGCTGCTAATGCAC < 41bp 1 0.440117316568735 1 0.456937342882156 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57737924 chr17:57737919 nonsynonymous SNV 0.997 1 16 hm5C_associated_SNPs_32036 0 0 1 0 1 CLTC chr17:57737949 5'GT 57737949 Upstream 31bp
chr11 35006133 35006133 1 + A G SARC 35006117 + 35006097 35006137 41 TTTTCTTTTTCTATTTCTAGCAAATGCCAGATGTTAATGTA TTTTCTTTTTCTATTTCTAGCAAATGCCAGATGTTAGTGTA < 41bp 1 0.146611295567355 1 0.629269957542419 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDHX ENSG00000110435 CDS Human protein_coding chr11:35006117 chr11:35006133 nonsynonymous SNV 0.954 4 37 hm5C_associated_SNPs_32037 0 0 1 0 1 PDHX chr11:35006117 3'AG 35006117 Downstream 17bp
chr1 228451900 228451900 1 + G A SARC 228451881 + 228451861 228451901 41 GTGCAGGCTGAGGCGGGGACCAGTGCCACGCTGAGCTGCGA GTGCAGGCTGAGGCGGGGACCAGTGCCACGCTGAGCTGCAA < 41bp 1 0.109851367063757 1 0.77393639087677 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228451881 chr1:228451900 nonsynonymous SNV 0.905 3 40 hm5C_associated_SNPs_32038 0 0 0 0 1 OBSCN chr1:228451817 3'AG 228451817 Downstream 84bp
chr12 112915797 112915797 1 + C T SARC 112915794 + 112915774 112915814 41 CTCCCGAGTGATTGTCATGACAACGAAAGAAGTGGAGAGAG CTCCCGAGTGATTGTCATGACAATGAAAGAAGTGGAGAGAG < 41bp 1 0.376345404381894 1 0.310958325862885 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915794 chr12:112915797 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_32039 0 0 1 0 1 PTPN11 chr12:112915819 5'GT 112915819 Upstream 23bp
chr12 57624685 57624685 1 + G T SARC 57624668 + 57624648 57624688 41 CCAGACTCAGACTGGGGAAGCAAACAGGGGCTGGACAGGCC CCAGACTCAGACTGGGGAAGCAAACAGGGGCTGGACATGCC < 41bp 1 0.373236684850038 1 0.138315886259079 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57624668 chr12:57624685 nonsynonymous SNV 0.981 4 38 hm5C_associated_SNPs_32041 0 0 1 0 2 SHMT2 chr12:57624586 3'AG 57624586 Downstream 100bp
chr12 57624685 57624685 1 + G T SARC 57624668 + 57624648 57624688 41 CCAGACTCAGACTGGGGAAGCAAACAGGGGCTGGACAGGCC CCAGACTCAGACTGGGGAAGCAAACAGGGGCTGGACATGCC < 41bp 1 0.373236684850038 1 0.138315886259079 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57624668 chr12:57624685 nonsynonymous SNV 0.981 4 38 hm5C_associated_SNPs_32041 0 0 1 0 2 SHMT2 chr12:57624783 5'GT 57624783 Upstream 99bp
chr12 57624685 57624685 1 + G T SARC 57624678 + 57624658 57624698 41 ACTGGGGAAGCAAACAGGGGCTGGACAGGCCAGGAGAGCCT ACTGGGGAAGCAAACAGGGGCTGGACATGCCAGGAGAGCCT < 41bp 1 0.760840501890774 1 0.515624701976776 experiment 0.478318996218451 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57624678 chr12:57624685 nonsynonymous SNV 0.981 4 28 hm5C_associated_SNPs_32042 0 0 1 0 2 SHMT2 chr12:57624586 3'AG 57624586 Downstream 100bp
chr12 57624685 57624685 1 + G T SARC 57624678 + 57624658 57624698 41 ACTGGGGAAGCAAACAGGGGCTGGACAGGCCAGGAGAGCCT ACTGGGGAAGCAAACAGGGGCTGGACATGCCAGGAGAGCCT < 41bp 1 0.760840501890774 1 0.515624701976776 experiment 0.478318996218451 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57624678 chr12:57624685 nonsynonymous SNV 0.981 4 28 hm5C_associated_SNPs_32042 0 0 1 0 2 SHMT2 chr12:57624783 5'GT 57624783 Upstream 99bp
chr12 57624685 57624685 1 + G T SARC 57624701 + 57624681 57624721 41 GACAGGCCAGGAGAGCCTGTCGGACAGTGATCCTGAGATGT GACATGCCAGGAGAGCCTGTCGGACAGTGATCCTGAGATGT < 41bp 1 0.348882353942483 1 0.399427473545074 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57624701 chr12:57624685 nonsynonymous SNV 0.981 4 5 hm5C_associated_SNPs_32043 0 0 1 0 2 SHMT2 chr12:57624586 3'AG 57624586 Downstream 100bp
chr12 57624685 57624685 1 + G T SARC 57624701 + 57624681 57624721 41 GACAGGCCAGGAGAGCCTGTCGGACAGTGATCCTGAGATGT GACATGCCAGGAGAGCCTGTCGGACAGTGATCCTGAGATGT < 41bp 1 0.348882353942483 1 0.399427473545074 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57624701 chr12:57624685 nonsynonymous SNV 0.981 4 5 hm5C_associated_SNPs_32043 0 0 1 0 2 SHMT2 chr12:57624783 5'GT 57624783 Upstream 99bp
chr22 38870538 38870538 1 + G T SARC 38870544 + 38870524 38870564 41 ACAGGCATCTCTGGGAAGAGCCAGATCCTGTTTGCTCTCGT ACAGGCATCTCTGGTAAGAGCCAGATCCTGTTTGCTCTCGT < 41bp 1 0.769538704018637 1 0.170018225908279 experiment 0.460922591962727 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KDELR3 ENSG00000100196 CDS Human protein_coding chr22:38870544 chr22:38870538 synonymous SNV . 0 15 hm5C_associated_SNPs_32044 0 0 0 0 2 KDELR3 chr22:38870528 3'AG 38870528 Downstream 11bp
chr22 38870538 38870538 1 + G T SARC 38870544 + 38870524 38870564 41 ACAGGCATCTCTGGGAAGAGCCAGATCCTGTTTGCTCTCGT ACAGGCATCTCTGGTAAGAGCCAGATCCTGTTTGCTCTCGT < 41bp 1 0.769538704018637 1 0.170018225908279 experiment 0.460922591962727 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KDELR3 ENSG00000100196 CDS Human protein_coding chr22:38870544 chr22:38870538 synonymous SNV . 0 15 hm5C_associated_SNPs_32044 0 0 0 0 2 KDELR3 chr22:38870628 5'GT 38870628 Upstream 91bp
chr16 66998569 66998569 1 + C A SARC 66998564 + 66998544 66998584 41 GCAGGGCTGTTCCACAGAGCCATCACACAGAGTGGGGTCAT GCAGGGCTGTTCCACAGAGCCATCAAACAGAGTGGGGTCAT < 41bp 1 0.486275914085571 1 0.238858103752136 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:66998564 chr16:66998569 nonsynonymous SNV 0.207 0 26 hm5C_associated_SNPs_32046 0 0 1 0 2 CES3 chr16:66998526 3'AG 66998526 Downstream 44bp
chr16 66998569 66998569 1 + C A SARC 66998564 + 66998544 66998584 41 GCAGGGCTGTTCCACAGAGCCATCACACAGAGTGGGGTCAT GCAGGGCTGTTCCACAGAGCCATCAAACAGAGTGGGGTCAT < 41bp 1 0.486275914085571 1 0.238858103752136 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:66998564 chr16:66998569 nonsynonymous SNV 0.207 0 26 hm5C_associated_SNPs_32046 0 0 1 0 2 CES3 chr16:66998630 5'GT 66998630 Upstream 62bp
chr5 141353192 141353192 1 + G T SARC 141353198 + 141353178 141353218 41 CAGGAGGATGAATTGCTGGCCCTGGCAAGTATTTACGATGG CAGGAGGATGAATTTCTGGCCCTGGCAAGTATTTACGATGG < 41bp 1 0.303471300097903 1 0.155482798814774 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control RNF14 ENSG00000013561 CDS Human antisense chr5:141353198 chr5:141353192 nonsynonymous SNV 0.999 4 15 hm5C_associated_SNPs_32047 0 0 1 0 1 RNF14 chr5:141353148 3'AG 141353148 Downstream 45bp
chr15 32925203 32925203 1 + G T SARC 32925212 + 32925192 32925232 41 CAAGCTCAGAAGGGTCATCTCAGAGTTCACTCTCTCCTGTA CAAGCTCAGAATGGTCATCTCAGAGTTCACTCTCTCCTGTA < 41bp 1 0.769018974693787 1 0.590401947498322 experiment 0.461962050612426 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ARHGAP11A ENSG00000198826 CDS Human protein_coding chr15:32925212 chr15:32925203 nonsynonymous SNV 0.998 3 12 hm5C_associated_SNPs_32048 0 0 1 0 1 ARHGAP11A chr15:32925180 3'AG 32925180 Downstream 24bp
chr15 48626662 48626662 1 + G A SARC 48626680 + 48626660 48626700 41 ACGGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAG ACAGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAG < 41bp 1 0.0989200373412812 1 0.0728571116924286 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DUT ENSG00000128951 CDS Human protein_coding chr15:48626680 chr15:48626662 synonymous SNV . 0 3 hm5C_associated_SNPs_32049 0 0 1 0 2 DUT chr15:48626614 3'AG 48626614 Downstream 49bp
chr15 48626662 48626662 1 + G A SARC 48626680 + 48626660 48626700 41 ACGGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAG ACAGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAG < 41bp 1 0.0989200373412812 1 0.0728571116924286 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DUT ENSG00000128951 CDS Human protein_coding chr15:48626680 chr15:48626662 synonymous SNV . 0 3 hm5C_associated_SNPs_32049 0 0 1 0 2 DUT chr15:48626705 5'GT 48626705 Upstream 44bp
chr15 48626662 48626662 1 + G A SARC 48626682 + 48626662 48626702 41 GGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAG AGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAG < 41bp 1 0.201228656761242 1 0.0883403718471527 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DUT ENSG00000128951 CDS Human protein_coding chr15:48626682 chr15:48626662 synonymous SNV . 0 1 hm5C_associated_SNPs_32050 0 0 1 0 2 DUT chr15:48626614 3'AG 48626614 Downstream 49bp
chr15 48626662 48626662 1 + G A SARC 48626682 + 48626662 48626702 41 GGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAG AGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAG < 41bp 1 0.201228656761242 1 0.0883403718471527 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DUT ENSG00000128951 CDS Human protein_coding chr15:48626682 chr15:48626662 synonymous SNV . 0 1 hm5C_associated_SNPs_32050 0 0 1 0 2 DUT chr15:48626705 5'GT 48626705 Upstream 44bp
chrX 7171296 7171296 1 + C A SARC 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGAATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA < 41bp 1 0.302702576088157 1 0.0641660094261169 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171296 nonsynonymous SNV 0.002 1 5 hm5C_associated_SNPs_32051 0 0 0 1 1 STS chrX:7171237 3'AG 7171237 Downstream 60bp
chr6 25450210 25450210 1 + G A SARC 25450192 + 25450172 25450212 41 AGTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAGCA AGTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAACA < 41bp 1 0.419729675702341 1 0.386916011571884 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25450192 chr6:25450210 synonymous SNV . 0 39 hm5C_associated_SNPs_32053 0 0 0 0 2 CARMIL1 chr6:25450126 3'AG 25450126 Downstream 85bp
chr6 25450210 25450210 1 + G A SARC 25450192 + 25450172 25450212 41 AGTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAGCA AGTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAACA < 41bp 1 0.419729675702341 1 0.386916011571884 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25450192 chr6:25450210 synonymous SNV . 0 39 hm5C_associated_SNPs_32053 0 0 0 0 2 CARMIL1 chr6:25450223 5'GT 25450223 Upstream 14bp
chr7 142459862 142459862 1 + C A SARC 142459842 + 142459822 142459862 41 CAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAC CAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAA < 41bp 1 0.486688389236328 1 0.0512187480926514 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459842 chr7:142459862 nonsynonymous SNV 0.763 5 41 hm5C_associated_SNPs_32055 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 17bp
chr7 142459862 142459862 1 + C A SARC 142459844 + 142459824 142459864 41 GCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACAC GCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAAAC < 41bp 1 0.45084132829994 1 0.0250179469585419 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459844 chr7:142459862 nonsynonymous SNV 0.763 5 39 hm5C_associated_SNPs_32056 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 17bp
chr7 142459862 142459862 1 + C A SARC 142459847 + 142459827 142459867 41 ACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACACTGC ACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAAACTGC < 41bp 1 0.723631824007465 1 0.416486799716949 experiment 0.552736351985071 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459847 chr7:142459862 nonsynonymous SNV 0.763 5 36 hm5C_associated_SNPs_32057 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 17bp
chr7 142459862 142459862 1 + C A SARC 142459859 + 142459839 142459879 41 TGCCTCATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGG TGCCTCATCTCTGGCTGGGGCAAAACTGCGAGCTCTGGCGG < 41bp 1 0.797338105560771 1 0.362774014472961 experiment 0.405323788878458 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459859 chr7:142459862 nonsynonymous SNV 0.763 5 24 hm5C_associated_SNPs_32058 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 17bp
chr7 142459862 142459862 1 + C A SARC 142459864 + 142459844 142459884 41 CATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGT CATCTCTGGCTGGGGCAAAACTGCGAGCTCTGGCGGTGAGT < 41bp 1 0.752925534895215 1 0.405906170606613 experiment 0.494148930209569 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459864 chr7:142459862 nonsynonymous SNV 0.763 5 19 hm5C_associated_SNPs_32059 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 17bp
chr7 142459862 142459862 1 + C A SARC 142459867 + 142459847 142459887 41 CTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGG CTCTGGCTGGGGCAAAACTGCGAGCTCTGGCGGTGAGTGGG < 41bp 1 0.43274632601555 1 0.291166722774506 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459867 chr7:142459862 nonsynonymous SNV 0.763 5 16 hm5C_associated_SNPs_32060 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 17bp
chr7 142459862 142459862 1 + C A SARC 142459871 + 142459851 142459891 41 GGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCC GGCTGGGGCAAAACTGCGAGCTCTGGCGGTGAGTGGGACCC < 41bp 1 0.36291248050842 1 0.368289828300476 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459871 chr7:142459862 nonsynonymous SNV 0.763 5 12 hm5C_associated_SNPs_32061 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 17bp
chr7 142459862 142459862 1 + C A SARC 142459873 + 142459853 142459893 41 CTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCCTT CTGGGGCAAAACTGCGAGCTCTGGCGGTGAGTGGGACCCTT < 41bp 1 0.630700884404339 1 0.467204451560974 experiment 0.738598231191323 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459873 chr7:142459862 nonsynonymous SNV 0.763 5 10 hm5C_associated_SNPs_32062 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 17bp
chr7 142459862 142459862 1 + C A SARC 142459877 + 142459857 142459897 41 GGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCCTTAGTC GGCAAAACTGCGAGCTCTGGCGGTGAGTGGGACCCTTAGTC < 41bp 1 0.504596075141317 1 0.858884572982788 experiment 0.990807849717366 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459877 chr7:142459862 nonsynonymous SNV 0.763 5 6 hm5C_associated_SNPs_32063 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 17bp
chr9 131456028 131456028 1 + G T SARC 131456045 + 131456025 131456065 41 GCTGATGAGTTAGGAGAGGTCATCAAAGATGATATTTGGCC GCTTATGAGTTAGGAGAGGTCATCAAAGATGATATTTGGCC < 41bp 1 0.583890078948787 1 0.101844608783722 experiment 0.832219842102426 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SET ENSG00000119335 CDS Human protein_coding chr9:131456045 chr9:131456028 nonsynonymous SNV 0.999 4 4 hm5C_associated_SNPs_32064 0 0 1 1 1 SET chr9:131456087 5'GT 131456087 Upstream 60bp
chr7 90355898 90355898 1 + G A SARC 90355889 + 90355869 90355909 41 TTCTTTTCTCAGATATGTGTCACAAAGATGTCTACACGGAA TTCTTTTCTCAGATATGTGTCACAAAGATATCTACACGGAA < 41bp 1 0.322402928733725 1 0.207277059555054 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355889 chr7:90355898 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_32065 0 0 1 0 1 CDK14 chr7:90355881 3'AG 90355881 Downstream 18bp
chr7 90355898 90355898 1 + G A SARC 90355891 + 90355871 90355911 41 CTTTTCTCAGATATGTGTCACAAAGATGTCTACACGGAACT CTTTTCTCAGATATGTGTCACAAAGATATCTACACGGAACT < 41bp 1 0.151263178761801 1 0.115098297595978 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355891 chr7:90355898 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_32066 0 0 1 0 1 CDK14 chr7:90355881 3'AG 90355881 Downstream 18bp
chr7 90355898 90355898 1 + G A SARC 90355900 + 90355880 90355920 41 GATATGTGTCACAAAGATGTCTACACGGAACTGCCAGGGAA GATATGTGTCACAAAGATATCTACACGGAACTGCCAGGGAA < 41bp 1 0.616901057648882 1 0.158428400754929 experiment 0.766197884702236 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355900 chr7:90355898 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_32067 0 0 1 0 1 CDK14 chr7:90355881 3'AG 90355881 Downstream 18bp
chr7 90355898 90355898 1 + G A SARC 90355903 + 90355883 90355923 41 ATGTGTCACAAAGATGTCTACACGGAACTGCCAGGGAATGG ATGTGTCACAAAGATATCTACACGGAACTGCCAGGGAATGG < 41bp 1 0.36567798842254 1 0.0842422246932983 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355903 chr7:90355898 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_32068 0 0 1 0 1 CDK14 chr7:90355881 3'AG 90355881 Downstream 18bp
chr7 90355898 90355898 1 + G A SARC 90355905 + 90355885 90355925 41 GTGTCACAAAGATGTCTACACGGAACTGCCAGGGAATGGAC GTGTCACAAAGATATCTACACGGAACTGCCAGGGAATGGAC < 41bp 1 0.435889989223437 1 0.21717044711113 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355905 chr7:90355898 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_32069 0 0 1 0 1 CDK14 chr7:90355881 3'AG 90355881 Downstream 18bp
chr15 90617472 90617472 1 + G A SARC 90617476 + 90617456 90617496 41 AAGGGCAACCTGAGCCGGCACATGAAGGTCAAGCATGGCGT AAGGGCAACCTGAGCCAGCACATGAAGGTCAAGCATGGCGT < 41bp 1 0.52261426037321 1 0.431736260652542 experiment 0.95477147925358 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF710 ENSG00000140548 CDS Human protein_coding chr15:90617476 chr15:90617472 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_32070 0 0 0 0 1 ZNF710 chr15:90617522 5'GT 90617522 Upstream 51bp
chr7 100470808 100470808 1 + G A SARC 100470816 + 100470796 100470836 41 GTGTGGGCTGCTGCTCTCCTCTGAGGGCGAGTGTCAGGGCT GTGTGGGCTGCTACTCTCCTCTGAGGGCGAGTGTCAGGGCT < 41bp 1 0.733064831226916 1 0.667950391769409 experiment 0.533870337546168 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100470816 chr7:100470808 synonymous SNV . 0 13 hm5C_associated_SNPs_32071 0 0 1 0 1 TRIP6 chr7:100470794 3'AG 100470794 Downstream 15bp
chr1 7796530 7796530 1 + G A SARC 7796544 + 7796524 7796564 41 TTCCGCGGAATGACCCTACTCCACCTGGCCGCTGCCCAGGG TTCCGCAGAATGACCCTACTCCACCTGGCCGCTGCCCAGGG < 41bp 1 0.29064872734419 1 0.169453322887421 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMTA1 ENSG00000171735 CDS Human protein_coding chr1:7796544 chr1:7796530 nonsynonymous SNV 0.898 4 7 hm5C_associated_SNPs_32073 1 0 1 0 1 CAMTA1 chr1:7796600 5'GT 7796600 Upstream 71bp
chr7 142991804 142991804 1 + C A SARC 142991795 + 142991775 142991815 41 GCTCTGGAGGGGATGTGGACCACAGTACTCTAGTCACCCTC GCTCTGGAGGGGATGTGGACCACAGTACTATAGTCACCCTC < 41bp 1 0.785029883446036 1 0.587744355201721 experiment 0.429940233107929 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CASP2 ENSG00000106144 CDS Human protein_coding chr7:142991795 chr7:142991804 nonsynonymous SNV 0.989 3 30 hm5C_associated_SNPs_32074 0 0 1 0 1 CASP2 chr7:142991866 5'GT 142991866 Upstream 63bp
chr16 69353364 69353364 1 + G A SARC 69353363 + 69353343 69353383 41 AAATCCTACCTGGCCAAAGCCGTGGCAACAGAGGCCAACAA AAATCCTACCTGGCCAAAGCCATGGCAACAGAGGCCAACAA < 41bp 1 0.577511755063497 1 0.488075524568558 experiment 0.844976489873006 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS4A ENSG00000132612;ENSG00000260914 CDS Human other chr16:69353363 chr16:69353364 nonsynonymous SNV 0.705 5 22 hm5C_associated_SNPs_32076 0 0 1 0 2 VPS4A chr16:69353290 3'AG 69353290 Downstream 75bp
chr16 69353364 69353364 1 + G A SARC 69353363 + 69353343 69353383 41 AAATCCTACCTGGCCAAAGCCGTGGCAACAGAGGCCAACAA AAATCCTACCTGGCCAAAGCCATGGCAACAGAGGCCAACAA < 41bp 1 0.577511755063497 1 0.488075524568558 experiment 0.844976489873006 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS4A ENSG00000132612;ENSG00000260914 CDS Human other chr16:69353363 chr16:69353364 nonsynonymous SNV 0.705 5 22 hm5C_associated_SNPs_32076 0 0 1 0 2 VPS4A chr16:69353446 5'GT 69353446 Upstream 83bp
chr17 73750863 73750863 1 + G T SARC 73750868 + 73750848 73750888 41 ACCACACTGCCCAGGGACTACTCCACCCTCACCTCCGTCTC ACCACACTGCCCAGGTACTACTCCACCCTCACCTCCGTCTC < 41bp 1 0.667696115470646 1 0.900074481964111 experiment 0.664607769058708 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73750868 chr17:73750863 nonsynonymous SNV 0.882 3 16 hm5C_associated_SNPs_32077 0 0 0 0 1 ITGB4 chr17:73750896 5'GT 73750896 Upstream 34bp
chr19 6362546 6362546 1 + C A SARC 6362549 + 6362529 6362569 41 ATCCACATGTACATCAACAGCCCTGGTGAGCAGGGTCTTTC ATCCACATGTACATCAAAAGCCCTGGTGAGCAGGGTCTTTC < 41bp 1 0.299855188170236 1 0.03522127866745 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLPP ENSG00000125656 CDS Human protein_coding chr19:6362549 chr19:6362546 nonsynonymous SNV 0.998 4 18 hm5C_associated_SNPs_32078 0 0 1 0 2 CLPP chr19:6362457 3'AG 6362457 Downstream 90bp
chr19 6362546 6362546 1 + C A SARC 6362549 + 6362529 6362569 41 ATCCACATGTACATCAACAGCCCTGGTGAGCAGGGTCTTTC ATCCACATGTACATCAAAAGCCCTGGTGAGCAGGGTCTTTC < 41bp 1 0.299855188170236 1 0.03522127866745 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLPP ENSG00000125656 CDS Human protein_coding chr19:6362549 chr19:6362546 nonsynonymous SNV 0.998 4 18 hm5C_associated_SNPs_32078 0 0 1 0 2 CLPP chr19:6362553 5'GT 6362553 Upstream 8bp
chr19 6362546 6362546 1 + C A SARC 6362550 + 6362530 6362570 41 TCCACATGTACATCAACAGCCCTGGTGAGCAGGGTCTTTCC TCCACATGTACATCAAAAGCCCTGGTGAGCAGGGTCTTTCC < 41bp 1 0.230417660114939 1 0.0747759640216827 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLPP ENSG00000125656 CDS Human protein_coding chr19:6362550 chr19:6362546 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_32079 0 0 1 0 2 CLPP chr19:6362457 3'AG 6362457 Downstream 90bp
chr19 6362546 6362546 1 + C A SARC 6362550 + 6362530 6362570 41 TCCACATGTACATCAACAGCCCTGGTGAGCAGGGTCTTTCC TCCACATGTACATCAAAAGCCCTGGTGAGCAGGGTCTTTCC < 41bp 1 0.230417660114939 1 0.0747759640216827 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLPP ENSG00000125656 CDS Human protein_coding chr19:6362550 chr19:6362546 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_32079 0 0 1 0 2 CLPP chr19:6362553 5'GT 6362553 Upstream 8bp
chr1 3342252 3342252 1 + G T SARC 3342250 + 3342230 3342270 41 AAGTGCCACCTGTGCAACCGCTGCTTCGGGCAGCAGACCAA AAGTGCCACCTGTGCAACCGCTTCTTCGGGCAGCAGACCAA < 41bp 1 0.113809518126719 1 0.252065658569336 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3342250 chr1:3342252 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_32080 0 0 0 0 1 PRDM16 chr1:3342314 5'GT 3342314 Upstream 63bp
chr1 6271128 6271128 1 + G T SARC 6271142 + 6271122 6271162 41 GCCACTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTG GCCACTTCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTG < 41bp 1 0.339210774904841 1 0.271536767482758 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF207 ENSG00000158286 CDS Human protein_coding chr1:6271142 chr1:6271128 synonymous SNV . 0 7 hm5C_associated_SNPs_32081 0 0 1 0 2 RNF207 chr1:6271081 3'AG 6271081 Downstream 48bp
chr1 6271128 6271128 1 + G T SARC 6271142 + 6271122 6271162 41 GCCACTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTG GCCACTTCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTG < 41bp 1 0.339210774904841 1 0.271536767482758 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF207 ENSG00000158286 CDS Human protein_coding chr1:6271142 chr1:6271128 synonymous SNV . 0 7 hm5C_associated_SNPs_32081 0 0 1 0 2 RNF207 chr1:6271178 5'GT 6271178 Upstream 51bp
chr1 22307658 22307658 1 + G T SARC 22307639 + 22307619 22307659 41 GACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTGTGGC GACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTGTGTC < 41bp 1 0.658053133704297 1 0.784143924713135 experiment 0.683893732591407 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307639 chr1:22307658 nonsynonymous SNV 0.040 0 40 hm5C_associated_SNPs_32083 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 8bp
chr1 22307658 22307658 1 + G T SARC 22307645 + 22307625 22307665 41 TTTGTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGG TTTGTGCATCCACTCTGGAACCGCTCGTGTGTGTCCTGTGG < 41bp 1 0.113545769388844 1 0.0438969135284424 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307645 chr1:22307658 nonsynonymous SNV 0.040 0 34 hm5C_associated_SNPs_32084 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 8bp
chr1 22307658 22307658 1 + G T SARC 22307646 + 22307626 22307666 41 TTGTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGGG TTGTGCATCCACTCTGGAACCGCTCGTGTGTGTCCTGTGGG < 41bp 1 0.200037702327094 1 0.149332851171494 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307646 chr1:22307658 nonsynonymous SNV 0.040 0 33 hm5C_associated_SNPs_32085 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 8bp
chr1 22307658 22307658 1 + G T SARC 22307648 + 22307628 22307668 41 GTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGGGTG GTGCATCCACTCTGGAACCGCTCGTGTGTGTCCTGTGGGTG < 41bp 1 0.42932980618573 1 0.215864956378937 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307648 chr1:22307658 nonsynonymous SNV 0.040 0 31 hm5C_associated_SNPs_32086 0 0 0 0 1 CELA3B chr1:22307665 5'GT 22307665 Upstream 8bp
chr3 45043081 45043081 1 + G T SARC 45043087 + 45043067 45043107 41 CCATTGCTGTAAAGGCTGCTCTCTTCAATACAAGGTAAGTC CCATTGCTGTAAAGTCTGCTCTCTTCAATACAAGGTAAGTC < 41bp 1 0.193335612932027 1 0.0979932844638824 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EXOSC7 ENSG00000075914 CDS Human protein_coding chr3:45043087 chr3:45043081 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_32098 0 0 1 0 2 EXOSC7 chr3:45043030 3'AG 45043030 Downstream 52bp
chr3 45043081 45043081 1 + G T SARC 45043087 + 45043067 45043107 41 CCATTGCTGTAAAGGCTGCTCTCTTCAATACAAGGTAAGTC CCATTGCTGTAAAGTCTGCTCTCTTCAATACAAGGTAAGTC < 41bp 1 0.193335612932027 1 0.0979932844638824 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EXOSC7 ENSG00000075914 CDS Human protein_coding chr3:45043087 chr3:45043081 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_32098 0 0 1 0 2 EXOSC7 chr3:45043100 5'GT 45043100 Upstream 20bp
chr3 49736468 49736468 1 + G T SARC 49736459 + 49736439 49736479 41 TTGAGAACCTGTCCAGGGGCCTGGGTATGGCCTACTTCCCA TTGAGAACCTGTCCAGGGGCCTGGGTATGTCCTACTTCCCA < 41bp 1 0.547340548490713 1 0.213052839040756 experiment 0.905318903018574 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49736459 chr3:49736468 nonsynonymous SNV 0.998 4 30 hm5C_associated_SNPs_32099 0 0 1 0 1 RNF123 chr3:49736413 3'AG 49736413 Downstream 56bp
chr4 3174765 3174765 1 + G T SARC 3174757 + 3174737 3174777 41 AGTGTGAGGCCAGGCTTGTACCACTACTGCTTCATGGCCCC AGTGTGAGGCCAGGCTTGTACCACTACTTCTTCATGGCCCC < 41bp 1 0.154702768963487 1 0.642927348613739 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3174757 chr4:3174765 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_32100 0 0 1 0 1 HTT chr4:3174858 5'GT 3174858 Upstream 94bp
chr5 102345558 102345558 1 + G T SARC 102345555 + 102345535 102345575 41 GGGGAAATTATAGACATCTTCAAGCCAGTGCGCAAGGTATT GGGGAAATTATAGACATCTTCAATCCAGTGCGCAAGGTATT < 41bp 1 0.0696716078997132 1 0.0909560024738312 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PAM ENSG00000145730 CDS Human protein_coding chr5:102345555 chr5:102345558 nonsynonymous SNV 0.398 1 24 hm5C_associated_SNPs_32104 0 0 0 0 1 PAM chr5:102345570 5'GT 102345570 Upstream 13bp
chr5 176720902 176720902 1 + G T SARC 176720884 + 176720864 176720904 41 CATCTGCGGGAAGGAAGCAGCCTCCTTCTGTGAGATGTGCC CATCTGCGGGAAGGAAGCAGCCTCCTTCTGTGAGATGTTCC < 41bp 1 0.0216310530007285 1 0.141173601150513 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176720884 chr5:176720902 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_32105 0 0 1 0 1 NSD1 chr5:176720833 3'AG 176720833 Downstream 70bp
chr6 144875988 144875988 1 + G T SARC 144875991 + 144875971 144876011 41 TCTATATTCTTCAGCAAGCCCGACGGGATCCACTCACCAAA TCTATATTCTTCAGCAATCCCGACGGGATCCACTCACCAAA < 41bp 1 0.2944715901601 1 0.609919309616089 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144875991 chr6:144875988 nonsynonymous SNV 0.986 0 18 hm5C_associated_SNPs_32108 0 0 1 0 1 UTRN chr6:144876029 5'GT 144876029 Upstream 42bp
chr6 155139673 155139673 1 + G T SARC 155139674 + 155139654 155139694 41 TCGACAAGATGCATTTCGAGCTCTTCAGAAACTCAGTTCTG TCGACAAGATGCATTTCGATCTCTTCAGAAACTCAGTTCTG < 41bp 1 0.205323115996052 1 0.281758189201355 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155139674 chr6:155139673 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_32109 0 0 1 0 2 SCAF8 chr6:155139613 3'AG 155139613 Downstream 61bp
chr6 155139673 155139673 1 + G T SARC 155139674 + 155139654 155139694 41 TCGACAAGATGCATTTCGAGCTCTTCAGAAACTCAGTTCTG TCGACAAGATGCATTTCGATCTCTTCAGAAACTCAGTTCTG < 41bp 1 0.205323115996052 1 0.281758189201355 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155139674 chr6:155139673 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_32109 0 0 1 0 2 SCAF8 chr6:155139726 5'GT 155139726 Upstream 54bp
chr7 79842153 79842153 1 + G T SARC 79842156 + 79842136 79842176 41 AGAAAAAATCAAAAAGAGCCCTCTCACTATATGCTATCCAG AGAAAAAATCAAAAAGATCCCTCTCACTATATGCTATCCAG < 41bp 1 0.198893165518322 1 0.0616075396537781 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79842156 chr7:79842153 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_32110 0 0 1 0 1 GNAI1 chr7:79842185 5'GT 79842185 Upstream 33bp
chr7 91981899 91981899 1 + G T SARC 91981887 + 91981867 91981907 41 AGGGTCAAATACATCTGGATCTGATACACTCAGCTTCCCAT AGGGTCAAATACATCTGGATCTGATACACTCATCTTCCCAT < 41bp 1 0.278014382230421 1 0.0317254662513733 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:91981887 chr7:91981899 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_32111 0 0 1 0 1 ANKIB1 chr7:91981956 5'GT 91981956 Upstream 58bp
chr8 22064422 22064422 1 + G T SARC 22064413 + 22064393 22064433 41 ACCAGTGGTACCATCACCAGCCCCAACTGGCCTGACAAGTA ACCAGTGGTACCATCACCAGCCCCAACTGTCCTGACAAGTA < 41bp 1 0.182847851274181 1 0.578626871109009 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22064413 chr8:22064422 nonsynonymous SNV 0.999 3 30 hm5C_associated_SNPs_32112 0 0 1 0 2 BMP1 chr8:22064367 3'AG 22064367 Downstream 56bp
chr8 22064422 22064422 1 + G T SARC 22064413 + 22064393 22064433 41 ACCAGTGGTACCATCACCAGCCCCAACTGGCCTGACAAGTA ACCAGTGGTACCATCACCAGCCCCAACTGTCCTGACAAGTA < 41bp 1 0.182847851274181 1 0.578626871109009 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22064413 chr8:22064422 nonsynonymous SNV 0.999 3 30 hm5C_associated_SNPs_32112 0 0 1 0 2 BMP1 chr8:22064494 5'GT 22064494 Upstream 73bp
chr8 27288490 27288490 1 + G T SARC 27288507 + 27288487 27288527 41 CCGGCTTCGCCAACATCGACCAGGAGACCTACCGCTGTGAA CCGTCTTCGCCAACATCGACCAGGAGACCTACCGCTGTGAA < 41bp 1 0.722849885180696 1 0.967969417572021 experiment 0.554300229638607 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTK2B ENSG00000120899 CDS Human protein_coding chr8:27288507 chr8:27288490 nonsynonymous SNV 0.866 0 4 hm5C_associated_SNPs_32113 0 0 1 0 1 PTK2B chr8:27288533 5'GT 27288533 Upstream 44bp
chr8 124787441 124787441 1 + G T SARC 124787439 + 124787419 124787459 41 TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGCT TATGAGGAACTGCTAAAGTACATCCGAGATCATCTCATGCT < 41bp 1 0.165943649295518 1 0.0782014131546021 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787439 chr8:124787441 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_32115 0 0 0 0 2 FAM91A1 chr8:124787387 3'AG 124787387 Downstream 55bp
chr8 124787441 124787441 1 + G T SARC 124787439 + 124787419 124787459 41 TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGCT TATGAGGAACTGCTAAAGTACATCCGAGATCATCTCATGCT < 41bp 1 0.165943649295518 1 0.0782014131546021 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787439 chr8:124787441 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_32115 0 0 0 0 2 FAM91A1 chr8:124787538 5'GT 124787538 Upstream 98bp
chr8 145735842 145735842 1 + G T SARC 145735855 + 145735835 145735875 41 GTGGTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTT GTGGTCTTCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTT < 41bp 1 0.222983886619281 1 0.0484377145767212 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735855 chr8:145735842 nonsynonymous SNV 0.667 0 8 hm5C_associated_SNPs_32116 0 0 1 0 2 MFSD3 chr8:145735743 3'AG 145735743 Downstream 100bp
chr8 145735842 145735842 1 + G T SARC 145735855 + 145735835 145735875 41 GTGGTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTT GTGGTCTTCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTT < 41bp 1 0.222983886619281 1 0.0484377145767212 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735855 chr8:145735842 nonsynonymous SNV 0.667 0 8 hm5C_associated_SNPs_32116 0 0 1 0 2 MFSD3 chr8:145735890 5'GT 145735890 Upstream 49bp
chr8 145735842 145735842 1 + G T SARC 145735858 + 145735838 145735878 41 GTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTTGCT GTCTTCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTTGCT < 41bp 1 0.159799327565676 1 0.269829928874969 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735858 chr8:145735842 nonsynonymous SNV 0.667 0 5 hm5C_associated_SNPs_32117 0 0 1 0 2 MFSD3 chr8:145735743 3'AG 145735743 Downstream 100bp
chr8 145735842 145735842 1 + G T SARC 145735858 + 145735838 145735878 41 GTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTTGCT GTCTTCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTTGCT < 41bp 1 0.159799327565676 1 0.269829928874969 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735858 chr8:145735842 nonsynonymous SNV 0.667 0 5 hm5C_associated_SNPs_32117 0 0 1 0 2 MFSD3 chr8:145735890 5'GT 145735890 Upstream 49bp
chr9 35733267 35733267 1 + G T SARC 35733277 + 35733257 35733297 41 ATATGGAGGAGCTGGCAGAGCAGGTACTTGACTTGATTTTC ATATGGAGGATCTGGCAGAGCAGGTACTTGACTTGATTTTC < 41bp 1 0.648718591998564 1 0.468078374862671 experiment 0.702562816002872 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733277 chr9:35733267 nonsynonymous SNV 0.007 0 11 hm5C_associated_SNPs_32118 0 0 1 0 2 CREB3 chr9:35733212 3'AG 35733212 Downstream 56bp
chr9 35733267 35733267 1 + G T SARC 35733277 + 35733257 35733297 41 ATATGGAGGAGCTGGCAGAGCAGGTACTTGACTTGATTTTC ATATGGAGGATCTGGCAGAGCAGGTACTTGACTTGATTTTC < 41bp 1 0.648718591998564 1 0.468078374862671 experiment 0.702562816002872 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733277 chr9:35733267 nonsynonymous SNV 0.007 0 11 hm5C_associated_SNPs_32118 0 0 1 0 2 CREB3 chr9:35733279 5'GT 35733279 Upstream 13bp
chr10 112335143 112335143 1 + G T SARC 112335144 + 112335124 112335164 41 GTCATCTTCGTCCAGAACAGCGGTTGGCTTTATTGCATGTG GTCATCTTCGTCCAGAACATCGGTTGGCTTTATTGCATGTG < 41bp 1 0.284311136062667 1 0.129537284374237 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMC3 ENSG00000108055 CDS Human protein_coding chr10:112335144 chr10:112335143 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_32119 0 0 1 0 2 SMC3 chr10:112335094 3'AG 112335094 Downstream 50bp
chr10 112335143 112335143 1 + G T SARC 112335144 + 112335124 112335164 41 GTCATCTTCGTCCAGAACAGCGGTTGGCTTTATTGCATGTG GTCATCTTCGTCCAGAACATCGGTTGGCTTTATTGCATGTG < 41bp 1 0.284311136062667 1 0.129537284374237 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMC3 ENSG00000108055 CDS Human protein_coding chr10:112335144 chr10:112335143 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_32119 0 0 1 0 2 SMC3 chr10:112335161 5'GT 112335161 Upstream 19bp
chr11 61106782 61106782 1 + G T SARC 61106796 + 61106776 61106816 41 GGCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCGGT GGCCTGTCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCGGT < 41bp 1 0.609237040671439 1 0.572731852531433 experiment 0.781525918657122 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61106796 chr11:61106782 nonsynonymous SNV 0.901 4 7 hm5C_associated_SNPs_32120 0 0 1 0 1 TKFC chr11:61106726 3'AG 61106726 Downstream 57bp
chr11 61106782 61106782 1 + G T SARC 61106797 + 61106777 61106817 41 GCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCGGTG GCCTGTCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCGGTG < 41bp 1 0.786570097479186 1 0.736831068992615 experiment 0.426859805041629 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61106797 chr11:61106782 nonsynonymous SNV 0.901 4 6 hm5C_associated_SNPs_32121 0 0 1 0 1 TKFC chr11:61106726 3'AG 61106726 Downstream 57bp
chr11 61722638 61722638 1 + G T SARC 61722649 + 61722629 61722669 41 ATTGCGACAGCTACATCCAGCTCATCCCCATTTCCTTCGTG ATTGCGACATCTACATCCAGCTCATCCCCATTTCCTTCGTG < 41bp 1 0.186382768807762 1 0.02586430311203 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61722649 chr11:61722638 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_32122 0 0 0 0 1 BEST1 chr11:61722673 5'GT 61722673 Upstream 36bp
chr11 76892613 76892613 1 + G T SARC 76892615 + 76892595 76892635 41 GCCTGCCAGGCCAGGAGGGCCAGGCACCTAGTGGCTTTGAG GCCTGCCAGGCCAGGAGGTCCAGGCACCTAGTGGCTTTGAG < 41bp 1 0.315603012998236 1 0.536474943161011 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO7A ENSG00000137474 CDS Human protein_coding chr11:76892615 chr11:76892613 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_32123 0 0 1 0 1 MYO7A chr11:76892635 5'GT 76892635 Upstream 23bp
chr12 123102908 123102908 1 + G T SARC 123102893 + 123102873 123102913 41 TGGACTTGTTTTCACAGGTTCCCTACTTCAGCAAAGCGTGG TGGACTTGTTTTCACAGGTTCCCTACTTCAGCAAATCGTGG < 41bp 1 0.0589275157674176 1 0.03975909948349 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123102893 chr12:123102908 nonsynonymous SNV 0.978 1 36 hm5C_associated_SNPs_32126 0 0 1 0 2 KNTC1 chr12:123102890 3'AG 123102890 Downstream 19bp
chr12 123102908 123102908 1 + G T SARC 123102893 + 123102873 123102913 41 TGGACTTGTTTTCACAGGTTCCCTACTTCAGCAAAGCGTGG TGGACTTGTTTTCACAGGTTCCCTACTTCAGCAAATCGTGG < 41bp 1 0.0589275157674176 1 0.03975909948349 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123102893 chr12:123102908 nonsynonymous SNV 0.978 1 36 hm5C_associated_SNPs_32126 0 0 1 0 2 KNTC1 chr12:123102944 5'GT 123102944 Upstream 37bp
chr15 63073420 63073420 1 + G T SARC 63073407 + 63073387 63073427 41 CAGACGACTGTGGTTAAATACTCCAAAGCCATTGCGGTGAC CAGACGACTGTGGTTAAATACTCCAAAGCCATTTCGGTGAC < 41bp 1 0.667947327771461 1 0.969075441360474 experiment 0.664105344457077 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63073407 chr15:63073420 nonsynonymous SNV 0.998 3 34 hm5C_associated_SNPs_32127 0 0 0 0 2 TLN2 chr15:63073339 3'AG 63073339 Downstream 82bp
chr15 63073420 63073420 1 + G T SARC 63073407 + 63073387 63073427 41 CAGACGACTGTGGTTAAATACTCCAAAGCCATTGCGGTGAC CAGACGACTGTGGTTAAATACTCCAAAGCCATTTCGGTGAC < 41bp 1 0.667947327771461 1 0.969075441360474 experiment 0.664105344457077 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63073407 chr15:63073420 nonsynonymous SNV 0.998 3 34 hm5C_associated_SNPs_32127 0 0 0 0 2 TLN2 chr15:63073440 5'GT 63073440 Upstream 21bp
chr15 93482838 93482838 1 + G T SARC 93482839 + 93482819 93482859 41 AACCTCGTGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAG AACCTCGTGTTAAAAAGCATCCGAAGACTCAGCGTGGAAAG < 41bp 1 0.274701441012883 1 0.0412566363811493 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482839 chr15:93482838 nonsynonymous SNV 0.982 0 20 hm5C_associated_SNPs_32128 0 0 1 0 1 CHD2 chr15:93482808 3'AG 93482808 Downstream 31bp
chr15 93482838 93482838 1 + G T SARC 93482840 + 93482820 93482860 41 ACCTCGTGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGA ACCTCGTGTTAAAAAGCATCCGAAGACTCAGCGTGGAAAGA < 41bp 1 0.164663951304198 1 0.364522397518158 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482840 chr15:93482838 nonsynonymous SNV 0.982 0 19 hm5C_associated_SNPs_32129 0 0 1 0 1 CHD2 chr15:93482808 3'AG 93482808 Downstream 31bp
chr15 93482838 93482838 1 + G T SARC 93482846 + 93482826 93482866 41 TGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAAAA TGTTAAAAAGCATCCGAAGACTCAGCGTGGAAAGAGAAAAA < 41bp 1 0.289824473176692 1 0.234992265701294 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482846 chr15:93482838 nonsynonymous SNV 0.982 0 13 hm5C_associated_SNPs_32130 0 0 1 0 1 CHD2 chr15:93482808 3'AG 93482808 Downstream 31bp
chr15 93482838 93482838 1 + G T SARC 93482848 + 93482828 93482868 41 TTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAAAAAG TTAAAAAGCATCCGAAGACTCAGCGTGGAAAGAGAAAAAAG < 41bp 1 0.519249240924701 1 0.508222341537476 experiment 0.961501518150598 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482848 chr15:93482838 nonsynonymous SNV 0.982 0 11 hm5C_associated_SNPs_32131 0 0 1 0 1 CHD2 chr15:93482808 3'AG 93482808 Downstream 31bp
chr16 697452 697452 1 + G T SARC 697463 + 697443 697483 41 GTGTGAATGGCCGGCGGGCCCCCTCCACGTCCCCATCCTTC GTGTGAATGTCCGGCGGGCCCCCTCCACGTCCCCATCCTTC < 41bp 1 0.120143591954587 1 0.033041387796402 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MCRIP2 ENSG00000172366 CDS Human protein_coding chr16:697463 chr16:697452 nonsynonymous SNV 0.275 2 10 hm5C_associated_SNPs_32132 0 0 1 0 1 MCRIP2 chr16:697417 3'AG 697417 Downstream 36bp
chr16 67315532 67315532 1 + G T SARC 67315518 + 67315498 67315538 41 TGCTGCTAGTGGGAAGCACGCTGCTGAAGGAAGTGCCTTCC TGCTGCTAGTGGGAAGCACGCTGCTGAAGGAAGTTCCTTCC < 41bp 1 0.545577837898003 1 0.169688165187836 experiment 0.908844324203995 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67315518 chr16:67315532 synonymous SNV . 0 35 hm5C_associated_SNPs_32133 0 0 1 0 2 PLEKHG4 chr16:67315470 3'AG 67315470 Downstream 63bp
chr16 67315532 67315532 1 + G T SARC 67315518 + 67315498 67315538 41 TGCTGCTAGTGGGAAGCACGCTGCTGAAGGAAGTGCCTTCC TGCTGCTAGTGGGAAGCACGCTGCTGAAGGAAGTTCCTTCC < 41bp 1 0.545577837898003 1 0.169688165187836 experiment 0.908844324203995 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67315518 chr16:67315532 synonymous SNV . 0 35 hm5C_associated_SNPs_32133 0 0 1 0 2 PLEKHG4 chr16:67315547 5'GT 67315547 Upstream 16bp
chr17 37676266 37676266 1 + G T SARC 37676272 + 37676252 37676292 41 CTAGATCCTAGTAAGCGGTGCACAGCTGAACAGACCCTACA CTAGATCCTAGTAATCGGTGCACAGCTGAACAGACCCTACA < 41bp 1 0.185189673206685 1 0.155174732208252 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37676272 chr17:37676266 nonsynonymous SNV 0.983 1 15 hm5C_associated_SNPs_32135 0 0 1 0 1 CDK12 chr17:37676209 3'AG 37676209 Downstream 58bp
chr18 19433159 19433159 1 + G T SARC 19433161 + 19433141 19433181 41 TTCTTTTTCAACCCTGTGGCCACATGTGTGCTTGTGAGAGT TTCTTTTTCAACCCTGTGTCCACATGTGTGCTTGTGAGAGT < 41bp 1 0.27675902536511 1 0.531984388828278 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MIB1 ENSG00000101752 CDS Human protein_coding chr18:19433161 chr18:19433159 nonsynonymous SNV 0.974 4 19 hm5C_associated_SNPs_32136 0 0 1 0 1 MIB1 chr18:19433101 3'AG 19433101 Downstream 59bp
chr19 13049547 13049547 1 + G T SARC 13049544 + 13049524 13049564 41 CTCCTCGGCCTGGCCGTCGCCGAGCCTGCCGTCTACTTCAA CTCCTCGGCCTGGCCGTCGCCGATCCTGCCGTCTACTTCAA < 41bp 1 0.278674740648601 1 0.426328748464584 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13049544 chr19:13049547 nonsynonymous SNV 0.054 0 24 hm5C_associated_SNPs_32137 0 0 1 0 1 CALR chr19:13049584 5'GT 13049584 Upstream 38bp
chr19 13049547 13049547 1 + G T SARC 13049553 + 13049533 13049573 41 CTGGCCGTCGCCGAGCCTGCCGTCTACTTCAAGGAGCAGTT CTGGCCGTCGCCGATCCTGCCGTCTACTTCAAGGAGCAGTT < 41bp 1 0.227912440288607 1 0.253037601709366 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13049553 chr19:13049547 nonsynonymous SNV 0.054 0 15 hm5C_associated_SNPs_32138 0 0 1 0 1 CALR chr19:13049584 5'GT 13049584 Upstream 38bp
chr19 34818688 34818688 1 + G T SARC 34818689 + 34818669 34818709 41 TTTCCAGGCATATAAGATAGCTCTGGAAAGCTTAGGACACT TTTCCAGGCATATAAGATATCTCTGGAAAGCTTAGGACACT < 41bp 1 0.268121793064202 1 0.241961508989334 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34818689 chr19:34818688 nonsynonymous SNV 0.999 3 20 hm5C_associated_SNPs_32139 0 0 1 0 2 KIAA0355 chr19:34818676 3'AG 34818676 Downstream 13bp
chr19 34818688 34818688 1 + G T SARC 34818689 + 34818669 34818709 41 TTTCCAGGCATATAAGATAGCTCTGGAAAGCTTAGGACACT TTTCCAGGCATATAAGATATCTCTGGAAAGCTTAGGACACT < 41bp 1 0.268121793064202 1 0.241961508989334 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34818689 chr19:34818688 nonsynonymous SNV 0.999 3 20 hm5C_associated_SNPs_32139 0 0 1 0 2 KIAA0355 chr19:34818771 5'GT 34818771 Upstream 84bp
chr20 46268480 46268480 1 + G T SARC 46268463 + 46268443 46268483 41 GATTATAATACTTCTTTACCCAGACCTGCACTGGGTGGCTC GATTATAATACTTCTTTACCCAGACCTGCACTGGGTGTCTC < 41bp 1 0.270830913291394 1 0.400874137878418 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NCOA3 ENSG00000124151 CDS Human protein_coding chr20:46268463 chr20:46268480 nonsynonymous SNV 0.008 2 38 hm5C_associated_SNPs_32140 0 0 1 0 1 NCOA3 chr20:46268566 5'GT 46268566 Upstream 87bp
chr20 60881341 60881341 1 + G T SARC 60881329 + 60881309 60881349 41 CAACCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCA CAACCCCCCGATGCCTGGGGCGCTGGGGGCCATCGGAAGCA < 41bp 1 0.261353017224966 1 0.449165910482407 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60881329 chr20:60881341 nonsynonymous SNV 0.003 2 33 hm5C_associated_SNPs_32141 0 0 1 0 2 ADRM1 chr20:60881253 3'AG 60881253 Downstream 89bp
chr20 60881341 60881341 1 + G T SARC 60881329 + 60881309 60881349 41 CAACCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCA CAACCCCCCGATGCCTGGGGCGCTGGGGGCCATCGGAAGCA < 41bp 1 0.261353017224966 1 0.449165910482407 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60881329 chr20:60881341 nonsynonymous SNV 0.003 2 33 hm5C_associated_SNPs_32141 0 0 1 0 2 ADRM1 chr20:60881376 5'GT 60881376 Upstream 36bp
chr20 60881341 60881341 1 + G T SARC 60881331 + 60881311 60881351 41 ACCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCAGC ACCCCCCGATGCCTGGGGCGCTGGGGGCCATCGGAAGCAGC < 41bp 1 0.796123979780338 1 0.608330726623535 experiment 0.407752040439324 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60881331 chr20:60881341 nonsynonymous SNV 0.003 2 31 hm5C_associated_SNPs_32142 0 0 1 0 2 ADRM1 chr20:60881253 3'AG 60881253 Downstream 89bp
chr20 60881341 60881341 1 + G T SARC 60881331 + 60881311 60881351 41 ACCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCAGC ACCCCCCGATGCCTGGGGCGCTGGGGGCCATCGGAAGCAGC < 41bp 1 0.796123979780338 1 0.608330726623535 experiment 0.407752040439324 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60881331 chr20:60881341 nonsynonymous SNV 0.003 2 31 hm5C_associated_SNPs_32142 0 0 1 0 2 ADRM1 chr20:60881376 5'GT 60881376 Upstream 36bp
chr2 32613926 32613926 1 + G T SARC 32613943 + 32613923 32613963 41 GTGGCGTCCTCAGTGATGGACAGATTGTCTTACCTCTTACC GTGTCGTCCTCAGTGATGGACAGATTGTCTTACCTCTTACC < 41bp 1 0.108504247592956 1 0.581556856632233 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32613943 chr2:32613926 nonsynonymous SNV 0.999 4 4 hm5C_associated_SNPs_32150 0 0 1 0 1 BIRC6 chr2:32614011 5'GT 32614011 Upstream 86bp
chr3 148559692 148559692 1 + G T SARC 148559686 + 148559666 148559706 41 CAGAGAGTGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAA CAGAGAGTGGATTTCTCCTGCATTCTTCCAGTGGTTTGTAA < 41bp 1 0.0689464289172506 1 0.0376958549022675 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559686 chr3:148559692 nonsynonymous SNV 0.991 4 27 hm5C_associated_SNPs_32151 0 0 0 0 2 CPB1 chr3:148559610 3'AG 148559610 Downstream 83bp
chr3 148559692 148559692 1 + G T SARC 148559686 + 148559666 148559706 41 CAGAGAGTGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAA CAGAGAGTGGATTTCTCCTGCATTCTTCCAGTGGTTTGTAA < 41bp 1 0.0689464289172506 1 0.0376958549022675 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559686 chr3:148559692 nonsynonymous SNV 0.991 4 27 hm5C_associated_SNPs_32151 0 0 0 0 2 CPB1 chr3:148559711 5'GT 148559711 Upstream 20bp
chr3 148559692 148559692 1 + G T SARC 148559690 + 148559670 148559710 41 GAGTGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGA GAGTGGATTTCTCCTGCATTCTTCCAGTGGTTTGTAAGAGA < 41bp 1 0.206935110731745 1 0.349096059799194 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559690 chr3:148559692 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_32152 0 0 0 0 2 CPB1 chr3:148559610 3'AG 148559610 Downstream 83bp
chr3 148559692 148559692 1 + G T SARC 148559690 + 148559670 148559710 41 GAGTGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGA GAGTGGATTTCTCCTGCATTCTTCCAGTGGTTTGTAAGAGA < 41bp 1 0.206935110731745 1 0.349096059799194 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559690 chr3:148559692 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_32152 0 0 0 0 2 CPB1 chr3:148559711 5'GT 148559711 Upstream 20bp
chr3 148559692 148559692 1 + G T SARC 148559693 + 148559673 148559713 41 TGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGAGGT TGGATTTCTCCTGCATTCTTCCAGTGGTTTGTAAGAGAGGT < 41bp 1 0.189981037710662 1 0.671618700027466 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559693 chr3:148559692 nonsynonymous SNV 0.991 4 20 hm5C_associated_SNPs_32153 0 0 0 0 2 CPB1 chr3:148559610 3'AG 148559610 Downstream 83bp
chr3 148559692 148559692 1 + G T SARC 148559693 + 148559673 148559713 41 TGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGAGGT TGGATTTCTCCTGCATTCTTCCAGTGGTTTGTAAGAGAGGT < 41bp 1 0.189981037710662 1 0.671618700027466 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559693 chr3:148559692 nonsynonymous SNV 0.991 4 20 hm5C_associated_SNPs_32153 0 0 0 0 2 CPB1 chr3:148559711 5'GT 148559711 Upstream 20bp
chr3 148559692 148559692 1 + G T SARC 148559694 + 148559674 148559714 41 GGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGAGGTC GGATTTCTCCTGCATTCTTCCAGTGGTTTGTAAGAGAGGTC < 41bp 1 0.47666614911999 1 0.550727605819702 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559694 chr3:148559692 nonsynonymous SNV 0.991 4 19 hm5C_associated_SNPs_32154 0 0 0 0 2 CPB1 chr3:148559610 3'AG 148559610 Downstream 83bp
chr3 148559692 148559692 1 + G T SARC 148559694 + 148559674 148559714 41 GGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGAGGTC GGATTTCTCCTGCATTCTTCCAGTGGTTTGTAAGAGAGGTC < 41bp 1 0.47666614911999 1 0.550727605819702 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559694 chr3:148559692 nonsynonymous SNV 0.991 4 19 hm5C_associated_SNPs_32154 0 0 0 0 2 CPB1 chr3:148559711 5'GT 148559711 Upstream 20bp
chr5 134130594 134130594 1 + G T SARC 134130604 + 134130584 134130624 41 TATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGG TATGTTTTCATCTACTTTCCCCAGAGCTATGGAGGCTTTGG < 41bp 1 0.642094958973777 1 0.502299308776855 experiment 0.715810082052446 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134130604 chr5:134130594 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_32155 0 0 1 3 1 DDX46 chr5:134130540 3'AG 134130540 Downstream 55bp
chr5 134130594 134130594 1 + G T SARC 134130605 + 134130585 134130625 41 ATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGGC ATGTTTTCATCTACTTTCCCCAGAGCTATGGAGGCTTTGGC < 41bp 1 0.364728380795317 1 0.353326201438904 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134130605 chr5:134130594 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_32156 0 0 1 3 1 DDX46 chr5:134130540 3'AG 134130540 Downstream 55bp
chr5 153709234 153709234 1 + G T SARC 153709248 + 153709228 153709268 41 CAGTGTGCTCAATCGCTCGCCTCCAGAGCTGGTCGCCGAGA CAGTGTTCTCAATCGCTCGCCTCCAGAGCTGGTCGCCGAGA < 41bp 1 0.597722030326761 1 0.933702945709229 experiment 0.804555939346479 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153709248 chr5:153709234 synonymous SNV . 0 7 hm5C_associated_SNPs_32157 0 0 0 0 1 GALNT10 chr5:153709298 5'GT 153709298 Upstream 65bp
chr11 403985 403985 1 + G T SARC 403978 + 403958 403998 41 GCCACCTGATCGAGAAGCTGCCGGGCAGCGTGGGTGAGAAG GCCACCTGATCGAGAAGCTGCCGGGCATCGTGGGTGAGAAG < 41bp 1 0.264587624953241 1 0.360161423683167 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKP3 ENSG00000184363 CDS Human protein_coding chr11:403978 chr11:403985 nonsynonymous SNV 0.482 2 28 hm5C_associated_SNPs_32164 0 0 1 0 1 PKP3 chr11:403943 3'AG 403943 Downstream 43bp
chr11 403985 403985 1 + G T SARC 403979 + 403959 403999 41 CCACCTGATCGAGAAGCTGCCGGGCAGCGTGGGTGAGAAGT CCACCTGATCGAGAAGCTGCCGGGCATCGTGGGTGAGAAGT < 41bp 1 0.369446288072317 1 0.472202390432358 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKP3 ENSG00000184363 CDS Human protein_coding chr11:403979 chr11:403985 nonsynonymous SNV 0.482 2 27 hm5C_associated_SNPs_32165 0 0 1 0 1 PKP3 chr11:403943 3'AG 403943 Downstream 43bp
chr14 24784929 24784929 1 + G T SARC 24784923 + 24784903 24784943 41 TTCATCTCTCTGCTGGCTATCATCCTGCTGTCAGTGGCGCT TTCATCTCTCTGCTGGCTATCATCCTTCTGTCAGTGGCGCT < 41bp 1 0.135431473028936 1 0.784430503845215 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LTB4R ENSG00000213903 CDS Human protein_coding chr14:24784923 chr14:24784929 synonymous SNV . 0 27 hm5C_associated_SNPs_32166 0 0 1 0 1 LTB4R chr14:24784843 3'AG 24784843 Downstream 87bp
chr14 74424925 74424925 1 + G T SARC 74424923 + 74424903 74424943 41 CCATTTCCTATGGCCGACTCCAGCCCTTGGGTTCATATTAC CCATTTCCTATGGCCGACTCCATCCCTTGGGTTCATATTAC < 41bp 1 0.142850962240246 1 0.0695010721683502 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ6 ENSG00000119723 CDS Human protein_coding chr14:74424923 chr14:74424925 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_32167 0 0 1 0 2 COQ6 chr14:74424850 3'AG 74424850 Downstream 76bp
chr14 74424925 74424925 1 + G T SARC 74424923 + 74424903 74424943 41 CCATTTCCTATGGCCGACTCCAGCCCTTGGGTTCATATTAC CCATTTCCTATGGCCGACTCCATCCCTTGGGTTCATATTAC < 41bp 1 0.142850962240246 1 0.0695010721683502 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ6 ENSG00000119723 CDS Human protein_coding chr14:74424923 chr14:74424925 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_32167 0 0 1 0 2 COQ6 chr14:74424980 5'GT 74424980 Upstream 56bp
chr16 630876 630876 1 + G T SARC 630864 + 630844 630884 41 CTCCTCTGCCACAGCTCCGGCTCCTGGTGGTCGCCGTGCAG CTCCTCTGCCACAGCTCCGGCTCCTGGTGGTCTCCGTGCAG < 41bp 1 0.290853327798436 1 0.334963291883469 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIGQ ENSG00000007541 CDS Human protein_coding chr16:630864 chr16:630876 nonsynonymous SNV 0.392 0 33 hm5C_associated_SNPs_32169 0 0 1 0 2 PIGQ chr16:630858 3'AG 630858 Downstream 19bp
chr16 630876 630876 1 + G T SARC 630864 + 630844 630884 41 CTCCTCTGCCACAGCTCCGGCTCCTGGTGGTCGCCGTGCAG CTCCTCTGCCACAGCTCCGGCTCCTGGTGGTCTCCGTGCAG < 41bp 1 0.290853327798436 1 0.334963291883469 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIGQ ENSG00000007541 CDS Human protein_coding chr16:630864 chr16:630876 nonsynonymous SNV 0.392 0 33 hm5C_associated_SNPs_32169 0 0 1 0 2 PIGQ chr16:630972 5'GT 630972 Upstream 97bp
chr19 9939308 9939308 1 + G T SARC 9939290 + 9939270 9939310 41 CGGATGATACCATCGGGGACCTTAAGAAGCTGATTGCAGCC CGGATGATACCATCGGGGACCTTAAGAAGCTGATTGCATCC < 41bp 1 0.429092446128445 1 0.0917793810367584 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBL5 ENSG00000198258 CDS Human protein_coding chr19:9939290 chr19:9939308 nonsynonymous SNV 0.995 4 39 hm5C_associated_SNPs_32171 0 0 1 0 2 UBL5 chr19:9939268 3'AG 9939268 Downstream 41bp
chr19 9939308 9939308 1 + G T SARC 9939290 + 9939270 9939310 41 CGGATGATACCATCGGGGACCTTAAGAAGCTGATTGCAGCC CGGATGATACCATCGGGGACCTTAAGAAGCTGATTGCATCC < 41bp 1 0.429092446128445 1 0.0917793810367584 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBL5 ENSG00000198258 CDS Human protein_coding chr19:9939290 chr19:9939308 nonsynonymous SNV 0.995 4 39 hm5C_associated_SNPs_32171 0 0 1 0 2 UBL5 chr19:9939351 5'GT 9939351 Upstream 44bp
chr19 36216702 36216702 1 + C T SARC 36216704 + 36216684 36216724 41 TATCCAACCCGGGCCACGCGCAAACGGCGCCACTGGGTGAG TATCCAACCCGGGCCACGTGCAAACGGCGCCACTGGGTGAG < 41bp 1 0.162083935404745 1 0.200727790594101 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216704 chr19:36216702 nonsynonymous SNV 0.972 5 19 hm5C_associated_SNPs_32173 0 0 1 0 2 KMT2B chr19:36216624 3'AG 36216624 Downstream 79bp
chr19 36216702 36216702 1 + C T SARC 36216704 + 36216684 36216724 41 TATCCAACCCGGGCCACGCGCAAACGGCGCCACTGGGTGAG TATCCAACCCGGGCCACGTGCAAACGGCGCCACTGGGTGAG < 41bp 1 0.162083935404745 1 0.200727790594101 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216704 chr19:36216702 nonsynonymous SNV 0.972 5 19 hm5C_associated_SNPs_32173 0 0 1 0 2 KMT2B chr19:36216719 5'GT 36216719 Upstream 18bp
chr19 49593595 49593595 1 + G T SARC 49593585 + 49593565 49593605 41 TCCTCCAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGA TCCTCCAACTCGTGCTGAAACCCGAGAGGATCGCATGGAGA < 41bp 1 0.67988219528404 1 0.330941259860992 experiment 0.640235609431921 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593585 chr19:49593595 nonsynonymous SNV 0.996 1 31 hm5C_associated_SNPs_32174 0 0 1 0 2 SNRNP70 chr19:49593548 3'AG 49593548 Downstream 48bp
chr19 49593595 49593595 1 + G T SARC 49593585 + 49593565 49593605 41 TCCTCCAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGA TCCTCCAACTCGTGCTGAAACCCGAGAGGATCGCATGGAGA < 41bp 1 0.67988219528404 1 0.330941259860992 experiment 0.640235609431921 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593585 chr19:49593595 nonsynonymous SNV 0.996 1 31 hm5C_associated_SNPs_32174 0 0 1 0 2 SNRNP70 chr19:49593610 5'GT 49593610 Upstream 16bp
chr19 49593595 49593595 1 + G T SARC 49593586 + 49593566 49593606 41 CCTCCAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGAG CCTCCAACTCGTGCTGAAACCCGAGAGGATCGCATGGAGAG < 41bp 1 0.4608052718761 1 0.662714719772339 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593586 chr19:49593595 nonsynonymous SNV 0.996 1 30 hm5C_associated_SNPs_32175 0 0 1 0 2 SNRNP70 chr19:49593548 3'AG 49593548 Downstream 48bp
chr19 49593595 49593595 1 + G T SARC 49593586 + 49593566 49593606 41 CCTCCAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGAG CCTCCAACTCGTGCTGAAACCCGAGAGGATCGCATGGAGAG < 41bp 1 0.4608052718761 1 0.662714719772339 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593586 chr19:49593595 nonsynonymous SNV 0.996 1 30 hm5C_associated_SNPs_32175 0 0 1 0 2 SNRNP70 chr19:49593610 5'GT 49593610 Upstream 16bp
chr19 49593595 49593595 1 + G T SARC 49593596 + 49593576 49593616 41 GTGCTGAAACCCGAGAGGAGCGCATGGAGAGGAAAGTATGT GTGCTGAAACCCGAGAGGATCGCATGGAGAGGAAAGTATGT < 41bp 1 0.283466501977394 1 0.271042943000793 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593596 chr19:49593595 nonsynonymous SNV 0.996 1 20 hm5C_associated_SNPs_32176 0 0 1 0 2 SNRNP70 chr19:49593548 3'AG 49593548 Downstream 48bp
chr19 49593595 49593595 1 + G T SARC 49593596 + 49593576 49593616 41 GTGCTGAAACCCGAGAGGAGCGCATGGAGAGGAAAGTATGT GTGCTGAAACCCGAGAGGATCGCATGGAGAGGAAAGTATGT < 41bp 1 0.283466501977394 1 0.271042943000793 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593596 chr19:49593595 nonsynonymous SNV 0.996 1 20 hm5C_associated_SNPs_32176 0 0 1 0 2 SNRNP70 chr19:49593610 5'GT 49593610 Upstream 16bp
chr19 49593595 49593595 1 + G T SARC 49593598 + 49593578 49593618 41 GCTGAAACCCGAGAGGAGCGCATGGAGAGGAAAGTATGTCA GCTGAAACCCGAGAGGATCGCATGGAGAGGAAAGTATGTCA < 41bp 1 0.614390934683434 1 0.227098256349564 experiment 0.771218130633132 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593598 chr19:49593595 nonsynonymous SNV 0.996 1 18 hm5C_associated_SNPs_32177 0 0 1 0 2 SNRNP70 chr19:49593548 3'AG 49593548 Downstream 48bp
chr19 49593595 49593595 1 + G T SARC 49593598 + 49593578 49593618 41 GCTGAAACCCGAGAGGAGCGCATGGAGAGGAAAGTATGTCA GCTGAAACCCGAGAGGATCGCATGGAGAGGAAAGTATGTCA < 41bp 1 0.614390934683434 1 0.227098256349564 experiment 0.771218130633132 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593598 chr19:49593595 nonsynonymous SNV 0.996 1 18 hm5C_associated_SNPs_32177 0 0 1 0 2 SNRNP70 chr19:49593610 5'GT 49593610 Upstream 16bp
chr21 47805870 47805870 1 + G T SARC 47805872 + 47805852 47805892 41 CTCCTCTCCATGCTCAAGGCCGACGTCAACCTGTCCCACAG CTCCTCTCCATGCTCAAGTCCGACGTCAACCTGTCCCACAG < 41bp 1 0.330625879732499 1 0.330525100231171 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47805872 chr21:47805870 nonsynonymous SNV 0.008 0 19 hm5C_associated_SNPs_32178 0 0 0 0 1 PCNT chr21:47805898 5'GT 47805898 Upstream 29bp
chrX 48760292 48760292 1 + G T SARC 48760278 + 48760258 48760298 41 ACACCACAGCAGCTGGGCCCCTCTTCCAGCAGCGGCCGTAT ACACCACAGCAGCTGGGCCCCTCTTCCAGCAGCGTCCGTAT < 41bp 1 0.51418423644025 1 0.138787358999252 experiment 0.9716315271195 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48760278 chrX:48760292 synonymous SNV . 0 35 hm5C_associated_SNPs_32179 0 0 1 0 1 PQBP1 chrX:48760205 3'AG 48760205 Downstream 88bp
chr1 26772882 26772882 1 + G T SARC 26772901 + 26772881 26772921 41 AGCTGATTGCACAAGCTGTACAGGCCACGAAGAACTACAAC ATCTGATTGCACAAGCTGTACAGGCCACGAAGAACTACAAC < 41bp 1 0.39350738731757 1 0.664387941360474 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26772901 chr1:26772882 nonsynonymous SNV 0.997 0 2 hm5C_associated_SNPs_32190 0 0 1 0 2 DHDDS chr1:26772807 3'AG 26772807 Downstream 76bp
chr1 26772882 26772882 1 + G T SARC 26772901 + 26772881 26772921 41 AGCTGATTGCACAAGCTGTACAGGCCACGAAGAACTACAAC ATCTGATTGCACAAGCTGTACAGGCCACGAAGAACTACAAC < 41bp 1 0.39350738731757 1 0.664387941360474 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26772901 chr1:26772882 nonsynonymous SNV 0.997 0 2 hm5C_associated_SNPs_32190 0 0 1 0 2 DHDDS chr1:26772923 5'GT 26772923 Upstream 42bp
chr1 26772895 26772895 1 + G T SARC 26772901 + 26772881 26772921 41 AGCTGATTGCACAAGCTGTACAGGCCACGAAGAACTACAAC AGCTGATTGCACAATCTGTACAGGCCACGAAGAACTACAAC < 41bp 1 0.395684413325019 1 0.347753524780273 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26772901 chr1:26772895 nonsynonymous SNV 0.981 1 15 hm5C_associated_SNPs_32191 0 0 1 0 2 DHDDS chr1:26772807 3'AG 26772807 Downstream 89bp
chr1 26772895 26772895 1 + G T SARC 26772901 + 26772881 26772921 41 AGCTGATTGCACAAGCTGTACAGGCCACGAAGAACTACAAC AGCTGATTGCACAATCTGTACAGGCCACGAAGAACTACAAC < 41bp 1 0.395684413325019 1 0.347753524780273 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26772901 chr1:26772895 nonsynonymous SNV 0.981 1 15 hm5C_associated_SNPs_32191 0 0 1 0 2 DHDDS chr1:26772923 5'GT 26772923 Upstream 29bp
chr1 26772895 26772895 1 + G T SARC 26772908 + 26772888 26772928 41 TGCACAAGCTGTACAGGCCACGAAGAACTACAACAAGTAAG TGCACAATCTGTACAGGCCACGAAGAACTACAACAAGTAAG < 41bp 1 0.261087714503888 1 0.440713435411453 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26772908 chr1:26772895 nonsynonymous SNV 0.981 1 8 hm5C_associated_SNPs_32192 0 0 1 0 2 DHDDS chr1:26772807 3'AG 26772807 Downstream 89bp
chr1 26772895 26772895 1 + G T SARC 26772908 + 26772888 26772928 41 TGCACAAGCTGTACAGGCCACGAAGAACTACAACAAGTAAG TGCACAATCTGTACAGGCCACGAAGAACTACAACAAGTAAG < 41bp 1 0.261087714503888 1 0.440713435411453 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26772908 chr1:26772895 nonsynonymous SNV 0.981 1 8 hm5C_associated_SNPs_32192 0 0 1 0 2 DHDDS chr1:26772923 5'GT 26772923 Upstream 29bp
chr1 27088699 27088699 1 + G T SARC 27088714 + 27088694 27088734 41 GCTCAGCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA GCTCATCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA < 41bp 1 0.223189961145833 1 0.0620279610157013 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27088714 chr1:27088699 nonsynonymous SNV 0.995 3 6 hm5C_associated_SNPs_32193 0 0 1 0 1 ARID1A chr1:27088643 3'AG 27088643 Downstream 57bp
chr1 43900108 43900108 1 + G T SARC 43900109 + 43900089 43900129 41 CTGAGTGTCGCCACCTGCAGCAGCTCCTGGTGAGGCGAGTT CTGAGTGTCGCCACCTGCATCAGCTCCTGGTGAGGCGAGTT < 41bp 1 0.146333454539548 1 0.487416982650757 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43900109 chr1:43900108 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_32194 0 0 1 0 2 SZT2 chr1:43900057 3'AG 43900057 Downstream 52bp
chr1 43900108 43900108 1 + G T SARC 43900109 + 43900089 43900129 41 CTGAGTGTCGCCACCTGCAGCAGCTCCTGGTGAGGCGAGTT CTGAGTGTCGCCACCTGCATCAGCTCCTGGTGAGGCGAGTT < 41bp 1 0.146333454539548 1 0.487416982650757 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43900109 chr1:43900108 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_32194 0 0 1 0 2 SZT2 chr1:43900156 5'GT 43900156 Upstream 49bp
chr1 45267573 45267573 1 + G T SARC 45267571 + 45267551 45267591 41 GGTGGGGGATTTTGGGCTGGCAGCCCGGTTGGAGCCTCCGG GGTGGGGGATTTTGGGCTGGCATCCCGGTTGGAGCCTCCGG < 41bp 1 0.140492178337384 1 0.105129182338715 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267571 chr1:45267573 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_32195 0 0 1 0 2 PLK3 chr1:45267517 3'AG 45267517 Downstream 57bp
chr1 45267573 45267573 1 + G T SARC 45267571 + 45267551 45267591 41 GGTGGGGGATTTTGGGCTGGCAGCCCGGTTGGAGCCTCCGG GGTGGGGGATTTTGGGCTGGCATCCCGGTTGGAGCCTCCGG < 41bp 1 0.140492178337384 1 0.105129182338715 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267571 chr1:45267573 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_32195 0 0 1 0 2 PLK3 chr1:45267604 5'GT 45267604 Upstream 32bp
chr1 64095682 64095682 1 + G T SARC 64095685 + 64095665 64095705 41 TGAAGAATATGCAGTTTGCCCTGACCTGAAAGTAGACCTTG TGAAGAATATGCAGTTTTCCCTGACCTGAAAGTAGACCTTG < 41bp 1 0.34485690712007 1 0.0229774713516235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PGM1 ENSG00000079739 CDS Human protein_coding chr1:64095685 chr1:64095682 nonsynonymous SNV 0.997 1 18 hm5C_associated_SNPs_32196 0 0 1 0 1 PGM1 chr1:64095613 3'AG 64095613 Downstream 70bp
chr1 95639427 95639427 1 + G T SARC 95639425 + 95639405 95639445 41 CGCCTGCTTGCAGAGCTTTCCAGCCCGTTTGTGAATCAGCG CGCCTGCTTGCAGAGCTTTCCATCCCGTTTGTGAATCAGCG < 41bp 1 0.0874067024583848 1 0.0798802673816681 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM56;TMEM56-RWDD3 ENSG00000152078;ENSG00000271092 CDS Human other chr1:95639425 chr1:95639427 nonsynonymous SNV 0.980 3 23 hm5C_associated_SNPs_32197 0 0 1 0 2 TMEM56;TMEM56-RWDD3 chr1:95639372 3'AG 95639372 Downstream 56bp
chr1 95639427 95639427 1 + G T SARC 95639425 + 95639405 95639445 41 CGCCTGCTTGCAGAGCTTTCCAGCCCGTTTGTGAATCAGCG CGCCTGCTTGCAGAGCTTTCCATCCCGTTTGTGAATCAGCG < 41bp 1 0.0874067024583848 1 0.0798802673816681 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM56;TMEM56-RWDD3 ENSG00000152078;ENSG00000271092 CDS Human other chr1:95639425 chr1:95639427 nonsynonymous SNV 0.980 3 23 hm5C_associated_SNPs_32197 0 0 1 0 2 TMEM56;TMEM56-RWDD3 chr1:95639445 5'GT 95639445 Upstream 19bp
chr1 154317164 154317164 1 + G T SARC 154317162 + 154317142 154317182 41 TCATCCCGCTCCGTAGGCAACGGCTTCACCTATCAGGACAA TCATCCCGCTCCGTAGGCAACGTCTTCACCTATCAGGACAA < 41bp 1 0.112415826211282 1 0.0400459766387939 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154317162 chr1:154317164 nonsynonymous SNV 0.583 1 23 hm5C_associated_SNPs_32207 0 0 1 0 2 ATP8B2 chr1:154317117 3'AG 154317117 Downstream 48bp
chr1 154317164 154317164 1 + G T SARC 154317162 + 154317142 154317182 41 TCATCCCGCTCCGTAGGCAACGGCTTCACCTATCAGGACAA TCATCCCGCTCCGTAGGCAACGTCTTCACCTATCAGGACAA < 41bp 1 0.112415826211282 1 0.0400459766387939 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154317162 chr1:154317164 nonsynonymous SNV 0.583 1 23 hm5C_associated_SNPs_32207 0 0 1 0 2 ATP8B2 chr1:154317261 5'GT 154317261 Upstream 98bp
chr1 154975338 154975338 1 + G T SARC 154975340 + 154975320 154975360 41 ACCGGAGCAGGGCCCCAAGCCCCCGGGCCTGGTGGGGGACG ACCGGAGCAGGGCCCCAATCCCCCGGGCCTGGTGGGGGACG < 41bp 1 0.410495606562348 1 0.562848925590515 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975340 chr1:154975338 . . 0 19 hm5C_associated_SNPs_32208 0 0 1 0 2 ZBTB7B chr1:154975319 3'AG 154975319 Downstream 20bp
chr1 154975338 154975338 1 + G T SARC 154975340 + 154975320 154975360 41 ACCGGAGCAGGGCCCCAAGCCCCCGGGCCTGGTGGGGGACG ACCGGAGCAGGGCCCCAATCCCCCGGGCCTGGTGGGGGACG < 41bp 1 0.410495606562348 1 0.562848925590515 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975340 chr1:154975338 . . 0 19 hm5C_associated_SNPs_32208 0 0 1 0 2 ZBTB7B chr1:154975419 5'GT 154975419 Upstream 82bp
chr1 154975338 154975338 1 + G T SARC 154975341 + 154975321 154975361 41 CCGGAGCAGGGCCCCAAGCCCCCGGGCCTGGTGGGGGACGC CCGGAGCAGGGCCCCAATCCCCCGGGCCTGGTGGGGGACGC < 41bp 1 0.6849651948021 1 0.812760293483734 experiment 0.630069610395801 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975341 chr1:154975338 . . 0 18 hm5C_associated_SNPs_32209 0 0 1 0 2 ZBTB7B chr1:154975319 3'AG 154975319 Downstream 20bp
chr1 154975338 154975338 1 + G T SARC 154975341 + 154975321 154975361 41 CCGGAGCAGGGCCCCAAGCCCCCGGGCCTGGTGGGGGACGC CCGGAGCAGGGCCCCAATCCCCCGGGCCTGGTGGGGGACGC < 41bp 1 0.6849651948021 1 0.812760293483734 experiment 0.630069610395801 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975341 chr1:154975338 . . 0 18 hm5C_associated_SNPs_32209 0 0 1 0 2 ZBTB7B chr1:154975419 5'GT 154975419 Upstream 82bp
chr1 154975338 154975338 1 + G T SARC 154975342 + 154975322 154975362 41 CGGAGCAGGGCCCCAAGCCCCCGGGCCTGGTGGGGGACGCG CGGAGCAGGGCCCCAATCCCCCGGGCCTGGTGGGGGACGCG < 41bp 1 0.677158042559946 1 0.760273814201355 experiment 0.645683914880108 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975342 chr1:154975338 . . 0 17 hm5C_associated_SNPs_32210 0 0 1 0 2 ZBTB7B chr1:154975319 3'AG 154975319 Downstream 20bp
chr1 154975338 154975338 1 + G T SARC 154975342 + 154975322 154975362 41 CGGAGCAGGGCCCCAAGCCCCCGGGCCTGGTGGGGGACGCG CGGAGCAGGGCCCCAATCCCCCGGGCCTGGTGGGGGACGCG < 41bp 1 0.677158042559946 1 0.760273814201355 experiment 0.645683914880108 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975342 chr1:154975338 . . 0 17 hm5C_associated_SNPs_32210 0 0 1 0 2 ZBTB7B chr1:154975419 5'GT 154975419 Upstream 82bp
chr1 154975338 154975338 1 + G T SARC 154975343 + 154975323 154975363 41 GGAGCAGGGCCCCAAGCCCCCGGGCCTGGTGGGGGACGCGC GGAGCAGGGCCCCAATCCCCCGGGCCTGGTGGGGGACGCGC < 41bp 1 0.677323236623865 1 0.731135249137878 experiment 0.64535352675227 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975343 chr1:154975338 . . 0 16 hm5C_associated_SNPs_32211 0 0 1 0 2 ZBTB7B chr1:154975319 3'AG 154975319 Downstream 20bp
chr1 154975338 154975338 1 + G T SARC 154975343 + 154975323 154975363 41 GGAGCAGGGCCCCAAGCCCCCGGGCCTGGTGGGGGACGCGC GGAGCAGGGCCCCAATCCCCCGGGCCTGGTGGGGGACGCGC < 41bp 1 0.677323236623865 1 0.731135249137878 experiment 0.64535352675227 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975343 chr1:154975338 . . 0 16 hm5C_associated_SNPs_32211 0 0 1 0 2 ZBTB7B chr1:154975419 5'GT 154975419 Upstream 82bp
chr1 155036349 155036349 1 + G T SARC 155036368 + 155036348 155036388 41 GGCTCCCCTCTGCGCGGGGGCTCCAGCCTCCGCCACGTAGT GTCTCCCCTCTGCGCGGGGGCTCCAGCCTCCGCCACGTAGT < 41bp 1 0.71506212203024 1 0.691852807998657 experiment 0.56987575593952 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFNA4 ENSG00000143590;ENSG00000243364;ENSG00000251246 CDS Human other chr1:155036368 chr1:155036349 nonsynonymous SNV 0.909 3 2 hm5C_associated_SNPs_32212 0 0 1 0 1 EFNA4 chr1:155036412 5'GT 155036412 Upstream 64bp
chr1 198231735 198231735 1 + G T SARC 198231736 + 198231716 198231756 41 AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG AATGGATGCCAAAGCACGTTCTGATTGCATCAAAGAAATAG < 41bp 1 0.228987366667017 1 0.119268089532852 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231736 chr1:198231735 nonsynonymous SNV 1.000 0 20 hm5C_associated_SNPs_32213 0 0 1 0 2 NEK7 chr1:198231705 3'AG 198231705 Downstream 31bp
chr1 198231735 198231735 1 + G T SARC 198231736 + 198231716 198231756 41 AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG AATGGATGCCAAAGCACGTTCTGATTGCATCAAAGAAATAG < 41bp 1 0.228987366667017 1 0.119268089532852 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231736 chr1:198231735 nonsynonymous SNV 1.000 0 20 hm5C_associated_SNPs_32213 0 0 1 0 2 NEK7 chr1:198231767 5'GT 198231767 Upstream 33bp
chr1 198231735 198231735 1 + G T SARC 198231746 + 198231726 198231766 41 AAAGCACGTGCTGATTGCATCAAAGAAATAGATCTTCTTAA AAAGCACGTTCTGATTGCATCAAAGAAATAGATCTTCTTAA < 41bp 1 0.299861514691959 1 0.744122684001923 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231746 chr1:198231735 nonsynonymous SNV 1.000 0 10 hm5C_associated_SNPs_32214 0 0 1 0 2 NEK7 chr1:198231705 3'AG 198231705 Downstream 31bp
chr1 198231735 198231735 1 + G T SARC 198231746 + 198231726 198231766 41 AAAGCACGTGCTGATTGCATCAAAGAAATAGATCTTCTTAA AAAGCACGTTCTGATTGCATCAAAGAAATAGATCTTCTTAA < 41bp 1 0.299861514691959 1 0.744122684001923 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231746 chr1:198231735 nonsynonymous SNV 1.000 0 10 hm5C_associated_SNPs_32214 0 0 1 0 2 NEK7 chr1:198231767 5'GT 198231767 Upstream 33bp
chr2 10022869 10022869 1 + G T SARC 10022851 + 10022831 10022871 41 ACAGGTTTGTTGAAGAGGACCATATTCCTTACATAAATGCT ACAGGTTTGTTGAAGAGGACCATATTCCTTACATAAATTCT < 41bp 1 0.047234469809237 1 0.114045560359955 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAF1B ENSG00000115750 CDS Human protein_coding chr2:10022851 chr2:10022869 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_32215 0 0 1 0 2 TAF1B chr2:10022835 3'AG 10022835 Downstream 35bp
chr2 10022869 10022869 1 + G T SARC 10022851 + 10022831 10022871 41 ACAGGTTTGTTGAAGAGGACCATATTCCTTACATAAATGCT ACAGGTTTGTTGAAGAGGACCATATTCCTTACATAAATTCT < 41bp 1 0.047234469809237 1 0.114045560359955 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAF1B ENSG00000115750 CDS Human protein_coding chr2:10022851 chr2:10022869 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_32215 0 0 1 0 2 TAF1B chr2:10022934 5'GT 10022934 Upstream 66bp
chr2 46609711 46609711 1 + G T SARC 46609709 + 46609689 46609729 41 GCCACCCAGTACCAGGACTACAGCCTGTCGTCAGCCCACAA GCCACCCAGTACCAGGACTACATCCTGTCGTCAGCCCACAA < 41bp 1 0.127230475915152 1 0.0373284518718719 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46609709 chr2:46609711 nonsynonymous SNV 0.398 1 23 hm5C_associated_SNPs_32216 0 0 1 0 1 EPAS1 chr2:46609737 5'GT 46609737 Upstream 27bp
chr2 100009508 100009508 1 + G T SARC 100009522 + 100009502 100009542 41 ACATTGGCTGGTTTACCCCTCCTTGTGGCTTATAAAGAAGA ACATTGTCTGGTTTACCCCTCCTTGTGGCTTATAAAGAAGA < 41bp 1 0.0315765818992082 1 0.167004019021988 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:100009522 chr2:100009508 nonsynonymous SNV 0.997 3 7 hm5C_associated_SNPs_32217 0 0 1 0 2 EIF5B chr2:100009430 3'AG 100009430 Downstream 79bp
chr2 100009508 100009508 1 + G T SARC 100009522 + 100009502 100009542 41 ACATTGGCTGGTTTACCCCTCCTTGTGGCTTATAAAGAAGA ACATTGTCTGGTTTACCCCTCCTTGTGGCTTATAAAGAAGA < 41bp 1 0.0315765818992082 1 0.167004019021988 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:100009522 chr2:100009508 nonsynonymous SNV 0.997 3 7 hm5C_associated_SNPs_32217 0 0 1 0 2 EIF5B chr2:100009561 5'GT 100009561 Upstream 54bp
chr2 219538634 219538634 1 + G T SARC 219538635 + 219538615 219538655 41 CAGACTATGCTGAGGGAGAGCTCTTTCAGATCCTAGAAGAT CAGACTATGCTGAGGGAGATCTCTTTCAGATCCTAGAAGAT < 41bp 1 0.144615868314083 1 0.203421920537949 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STK36 ENSG00000163482 CDS Human protein_coding chr2:219538635 chr2:219538634 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_32218 0 0 0 0 2 STK36 chr2:219538602 3'AG 219538602 Downstream 33bp
chr2 219538634 219538634 1 + G T SARC 219538635 + 219538615 219538655 41 CAGACTATGCTGAGGGAGAGCTCTTTCAGATCCTAGAAGAT CAGACTATGCTGAGGGAGATCTCTTTCAGATCCTAGAAGAT < 41bp 1 0.144615868314083 1 0.203421920537949 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STK36 ENSG00000163482 CDS Human protein_coding chr2:219538635 chr2:219538634 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_32218 0 0 0 0 2 STK36 chr2:219538679 5'GT 219538679 Upstream 46bp
chr2 241534002 241534002 1 + G T SARC 241533998 + 241533978 241534018 41 GGTAGATGCAGCGGTAGCATCTGAGCTCCTGTCCCAGCTCC GGTAGATGCAGCGGTAGCATCTGATCTCCTGTCCCAGCTCC < 41bp 1 0.592055602594857 1 0.51717609167099 experiment 0.815888794810287 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241533998 chr2:241534002 nonsynonymous SNV 0.765 1 25 hm5C_associated_SNPs_32219 0 0 1 1 1 CAPN10 chr2:241533960 3'AG 241533960 Downstream 43bp
chr3 10076401 10076401 1 + G T SARC 10076403 + 10076383 10076423 41 TAGAAGAATTTGTTAGTGGCCTGGAGTCTTACATTGAGGAT TAGAAGAATTTGTTAGTGTCCTGGAGTCTTACATTGAGGAT < 41bp 1 0.703676179674675 1 0.469633251428604 experiment 0.59264764065065 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10076403 chr3:10076401 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_32220 0 0 1 0 2 FANCD2 chr3:10076379 3'AG 10076379 Downstream 23bp
chr3 10076401 10076401 1 + G T SARC 10076403 + 10076383 10076423 41 TAGAAGAATTTGTTAGTGGCCTGGAGTCTTACATTGAGGAT TAGAAGAATTTGTTAGTGTCCTGGAGTCTTACATTGAGGAT < 41bp 1 0.703676179674675 1 0.469633251428604 experiment 0.59264764065065 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10076403 chr3:10076401 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_32220 0 0 1 0 2 FANCD2 chr3:10076482 5'GT 10076482 Upstream 82bp
chr3 47047875 47047875 1 + G T SARC 47047857 + 47047837 47047877 41 TCGGCTCTCAGCTGAGGAAGCAGCCCATCGCCTTGCACGCC TCGGCTCTCAGCTGAGGAAGCAGCCCATCGCCTTGCACTCC < 41bp 1 0.193546754266267 1 0.772260665893555 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47047857 chr3:47047875 nonsynonymous SNV 0.892 4 39 hm5C_associated_SNPs_32221 0 0 0 0 2 NBEAL2 chr3:47047823 3'AG 47047823 Downstream 53bp
chr3 47047875 47047875 1 + G T SARC 47047857 + 47047837 47047877 41 TCGGCTCTCAGCTGAGGAAGCAGCCCATCGCCTTGCACGCC TCGGCTCTCAGCTGAGGAAGCAGCCCATCGCCTTGCACTCC < 41bp 1 0.193546754266267 1 0.772260665893555 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47047857 chr3:47047875 nonsynonymous SNV 0.892 4 39 hm5C_associated_SNPs_32221 0 0 0 0 2 NBEAL2 chr3:47047939 5'GT 47047939 Upstream 65bp
chr4 3133409 3133409 1 + G T SARC 3133428 + 3133408 3133448 41 GGCCCTCAGCTGTGTGGGAGCAGCTGTGGCCCTCCACCCGG GTCCCTCAGCTGTGTGGGAGCAGCTGTGGCCCTCCACCCGG < 41bp 1 0.51561719591031 1 0.551638066768646 experiment 0.96876560817938 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3133428 chr4:3133409 nonsynonymous SNV 0.997 3 2 hm5C_associated_SNPs_32224 0 0 0 0 2 HTT chr4:3133365 3'AG 3133365 Downstream 45bp
chr4 3133409 3133409 1 + G T SARC 3133428 + 3133408 3133448 41 GGCCCTCAGCTGTGTGGGAGCAGCTGTGGCCCTCCACCCGG GTCCCTCAGCTGTGTGGGAGCAGCTGTGGCCCTCCACCCGG < 41bp 1 0.51561719591031 1 0.551638066768646 experiment 0.96876560817938 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3133428 chr4:3133409 nonsynonymous SNV 0.997 3 2 hm5C_associated_SNPs_32224 0 0 0 0 2 HTT chr4:3133502 5'GT 3133502 Upstream 94bp
chr4 57180270 57180270 1 + G T SARC 57180277 + 57180257 57180297 41 AACGGACACCCAGGCGAGGACAAGCCAACGTGGCACGAAGA AACGGACACCCAGTCGAGGACAAGCCAACGTGGCACGAAGA < 41bp 1 0.304093017851179 1 0.429612517356873 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57180277 chr4:57180270 nonsynonymous SNV 0.424 0 14 hm5C_associated_SNPs_32225 0 0 0 0 1 KIAA1211 chr4:57180206 3'AG 57180206 Downstream 65bp
chr4 87666202 87666202 1 + G T SARC 87666208 + 87666188 87666228 41 ATATGCCAGTACCTGCTGCACCTCTGCTCTTACCAGCATAA ATATGCCAGTACCTTCTGCACCTCTGCTCTTACCAGCATAA < 41bp 1 0.0396378770197513 1 0.0444177389144897 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN13 ENSG00000163629 CDS Human protein_coding chr4:87666208 chr4:87666202 synonymous SNV . 0 15 hm5C_associated_SNPs_32226 0 0 1 0 2 PTPN13 chr4:87666119 3'AG 87666119 Downstream 84bp
chr4 87666202 87666202 1 + G T SARC 87666208 + 87666188 87666228 41 ATATGCCAGTACCTGCTGCACCTCTGCTCTTACCAGCATAA ATATGCCAGTACCTTCTGCACCTCTGCTCTTACCAGCATAA < 41bp 1 0.0396378770197513 1 0.0444177389144897 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN13 ENSG00000163629 CDS Human protein_coding chr4:87666208 chr4:87666202 synonymous SNV . 0 15 hm5C_associated_SNPs_32226 0 0 1 0 2 PTPN13 chr4:87666281 5'GT 87666281 Upstream 80bp
chr4 87666223 87666223 1 + G T SARC 87666208 + 87666188 87666228 41 ATATGCCAGTACCTGCTGCACCTCTGCTCTTACCAGCATAA ATATGCCAGTACCTGCTGCACCTCTGCTCTTACCATCATAA < 41bp 1 0.0358858130947454 1 0.0372444987297058 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN13 ENSG00000163629 CDS Human protein_coding chr4:87666208 chr4:87666223 nonsynonymous SNV 0.995 4 36 hm5C_associated_SNPs_32227 0 0 1 0 1 PTPN13 chr4:87666281 5'GT 87666281 Upstream 59bp
chr4 170616781 170616781 1 + G T SARC 170616800 + 170616780 170616820 41 AGCTGCAGGGGTTTCTGTAGCTTTTGGTGCACCAATTGGAG ATCTGCAGGGGTTTCTGTAGCTTTTGGTGCACCAATTGGAG < 41bp 1 0.134613999654022 1 0.046945333480835 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLCN3 ENSG00000109572 CDS Human protein_coding chr4:170616800 chr4:170616781 nonsynonymous SNV 0.999 5 2 hm5C_associated_SNPs_32228 0 0 1 0 2 CLCN3 chr4:170616763 3'AG 170616763 Downstream 19bp
chr4 170616781 170616781 1 + G T SARC 170616800 + 170616780 170616820 41 AGCTGCAGGGGTTTCTGTAGCTTTTGGTGCACCAATTGGAG ATCTGCAGGGGTTTCTGTAGCTTTTGGTGCACCAATTGGAG < 41bp 1 0.134613999654022 1 0.046945333480835 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLCN3 ENSG00000109572 CDS Human protein_coding chr4:170616800 chr4:170616781 nonsynonymous SNV 0.999 5 2 hm5C_associated_SNPs_32228 0 0 1 0 2 CLCN3 chr4:170616843 5'GT 170616843 Upstream 63bp
chr5 1036463 1036463 1 + G T SARC 1036447 + 1036427 1036467 41 GAGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGG GAGAACACGGAGCGCAGAAACCACTACCTGGACCTCTCCGG < 41bp 1 0.179647372687666 1 0.0887462496757507 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036447 chr5:1036463 nonsynonymous SNV 0.955 4 37 hm5C_associated_SNPs_32229 0 0 0 0 2 NKD2 chr5:1036372 3'AG 1036372 Downstream 92bp
chr5 1036463 1036463 1 + G T SARC 1036447 + 1036427 1036467 41 GAGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGG GAGAACACGGAGCGCAGAAACCACTACCTGGACCTCTCCGG < 41bp 1 0.179647372687666 1 0.0887462496757507 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036447 chr5:1036463 nonsynonymous SNV 0.955 4 37 hm5C_associated_SNPs_32229 0 0 0 0 2 NKD2 chr5:1036499 5'GT 1036499 Upstream 37bp
chr5 1036463 1036463 1 + G T SARC 1036448 + 1036428 1036468 41 AGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGGG AGAACACGGAGCGCAGAAACCACTACCTGGACCTCTCCGGG < 41bp 1 0.538134050185077 1 0.20293915271759 experiment 0.923731899629845 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036448 chr5:1036463 nonsynonymous SNV 0.955 4 36 hm5C_associated_SNPs_32230 0 0 0 0 2 NKD2 chr5:1036372 3'AG 1036372 Downstream 92bp
chr5 1036463 1036463 1 + G T SARC 1036448 + 1036428 1036468 41 AGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGGG AGAACACGGAGCGCAGAAACCACTACCTGGACCTCTCCGGG < 41bp 1 0.538134050185077 1 0.20293915271759 experiment 0.923731899629845 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036448 chr5:1036463 nonsynonymous SNV 0.955 4 36 hm5C_associated_SNPs_32230 0 0 0 0 2 NKD2 chr5:1036499 5'GT 1036499 Upstream 37bp
chr5 169018122 169018122 1 + G T SARC 169018123 + 169018103 169018143 41 CGAATGTTAGAAAGTTTGAGCTGCGAATGTGAAGCTATTAA CGAATGTTAGAAAGTTTGATCTGCGAATGTGAAGCTATTAA < 41bp 1 0.510096841313788 1 0.140852361917496 experiment 0.979806317372425 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169018123 chr5:169018122 nonsynonymous SNV 0.911 2 20 hm5C_associated_SNPs_32231 0 0 1 0 1 SPDL1 chr5:169018207 5'GT 169018207 Upstream 86bp
chr6 21000521 21000521 1 + G T SARC 21000514 + 21000494 21000534 41 GCTTTTCTGCACATACCAGTCCAGTCTGCCTCCGACAGCGT GCTTTTCTGCACATACCAGTCCAGTCTTCCTCCGACAGCGT < 41bp 1 0.195365177599816 1 0.0408836901187897 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDKAL1 ENSG00000145996 CDS Human protein_coding chr6:21000514 chr6:21000521 nonsynonymous SNV 0.990 3 28 hm5C_associated_SNPs_32232 0 0 1 0 2 CDKAL1 chr6:21000458 3'AG 21000458 Downstream 64bp
chr6 21000521 21000521 1 + G T SARC 21000514 + 21000494 21000534 41 GCTTTTCTGCACATACCAGTCCAGTCTGCCTCCGACAGCGT GCTTTTCTGCACATACCAGTCCAGTCTTCCTCCGACAGCGT < 41bp 1 0.195365177599816 1 0.0408836901187897 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDKAL1 ENSG00000145996 CDS Human protein_coding chr6:21000514 chr6:21000521 nonsynonymous SNV 0.990 3 28 hm5C_associated_SNPs_32232 0 0 1 0 2 CDKAL1 chr6:21000603 5'GT 21000603 Upstream 83bp
chr6 43110019 43110019 1 + G T SARC 43110021 + 43110001 43110041 41 AACATCAAGCACACGGAGGCCCCCCTCTATGTCGTGGGTAT AACATCAAGCACACGGAGTCCCCCCTCTATGTCGTGGGTAT < 41bp 1 0.0758689357380373 1 0.0590914785861969 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTK7 ENSG00000112655 CDS Human protein_coding chr6:43110021 chr6:43110019 nonsynonymous SNV 0.999 2 19 hm5C_associated_SNPs_32234 0 0 1 0 1 PTK7 chr6:43110037 5'GT 43110037 Upstream 19bp
chr6 47576988 47576988 1 + G T SARC 47576982 + 47576962 47577002 41 AAAAAAATTCCCTGGATGAACTTAGAGCCCAGATTATTGAA AAAAAAATTCCCTGGATGAACTTAGATCCCAGATTATTGAA < 41bp 1 0.257363215607572 1 0.0611496567726135 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47576982 chr6:47576988 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_32235 0 0 1 0 1 CD2AP chr6:47577040 5'GT 47577040 Upstream 53bp
chr6 116754622 116754622 1 + G T SARC 116754623 + 116754603 116754643 41 TGGCAGTGGTAACTGGCTAGCTGACCAAATCAGAAGGAACC TGGCAGTGGTAACTGGCTATCTGACCAAATCAGAAGGAACC < 41bp 1 0.233595282131369 1 0.439911961555481 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSE ENSG00000111817 CDS Human protein_coding chr6:116754623 chr6:116754622 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_32237 0 0 0 0 1 DSE chr6:116754713 5'GT 116754713 Upstream 92bp
chr6 158497760 158497760 1 + G T SARC 158497757 + 158497737 158497777 41 CAAGCGACAAATGCCGCACCCCCGCCTGGACAGACAGGGTG CAAGCGACAAATGCCGCACCCCCTCCTGGACAGACAGGGTG < 41bp 1 0.0426680103416702 1 0.0660877823829651 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158497757 chr6:158497760 nonsynonymous SNV 0.823 4 24 hm5C_associated_SNPs_32238 0 0 1 0 1 SYNJ2 chr6:158497814 5'GT 158497814 Upstream 55bp
chr6 158497760 158497760 1 + G T SARC 158497758 + 158497738 158497778 41 AAGCGACAAATGCCGCACCCCCGCCTGGACAGACAGGGTGC AAGCGACAAATGCCGCACCCCCTCCTGGACAGACAGGGTGC < 41bp 1 0.0399387249094323 1 0.109879404306412 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158497758 chr6:158497760 nonsynonymous SNV 0.823 4 23 hm5C_associated_SNPs_32239 0 0 1 0 1 SYNJ2 chr6:158497814 5'GT 158497814 Upstream 55bp
chr6 159181731 159181731 1 + G T SARC 159181716 + 159181696 159181736 41 CCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAAGCTGGT CCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAATCTGGT < 41bp 1 0.566294096774273 1 0.247706860303879 experiment 0.867411806451455 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159181716 chr6:159181731 nonsynonymous SNV 0.038 2 36 hm5C_associated_SNPs_32240 0 0 0 0 2 SYTL3 chr6:159181672 3'AG 159181672 Downstream 60bp
chr6 159181731 159181731 1 + G T SARC 159181716 + 159181696 159181736 41 CCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAAGCTGGT CCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAATCTGGT < 41bp 1 0.566294096774273 1 0.247706860303879 experiment 0.867411806451455 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159181716 chr6:159181731 nonsynonymous SNV 0.038 2 36 hm5C_associated_SNPs_32240 0 0 0 0 2 SYTL3 chr6:159181777 5'GT 159181777 Upstream 47bp
chr7 30640793 30640793 1 + G T SARC 30640781 + 30640761 30640801 41 GAGGAACAGATCCTGGAGATCGATTGCACCATGCTCACCCC GAGGAACAGATCCTGGAGATCGATTGCACCATTCTCACCCC < 41bp 1 0.514891376059734 1 0.442584365606308 experiment 0.970217247880532 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GARS ENSG00000106105 CDS Human protein_coding chr7:30640781 chr7:30640793 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_32241 0 0 1 0 1 GARS chr7:30640816 5'GT 30640816 Upstream 24bp
chr7 129102865 129102865 1 + G T SARC 129102845 + 129102825 129102865 41 GAGACGCCATGTGAAATCCTCTACCAGGGAATGCTGTACAG GAGACGCCATGTGAAATCCTCTACCAGGGAATGCTGTACAT < 41bp 1 0.32337080076139 1 0.231141626834869 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129102845 chr7:129102865 nonsynonymous SNV 0.996 2 41 hm5C_associated_SNPs_32242 0 0 1 0 2 STRIP2 chr7:129102807 3'AG 129102807 Downstream 59bp
chr7 129102865 129102865 1 + G T SARC 129102845 + 129102825 129102865 41 GAGACGCCATGTGAAATCCTCTACCAGGGAATGCTGTACAG GAGACGCCATGTGAAATCCTCTACCAGGGAATGCTGTACAT < 41bp 1 0.32337080076139 1 0.231141626834869 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129102845 chr7:129102865 nonsynonymous SNV 0.996 2 41 hm5C_associated_SNPs_32242 0 0 1 0 2 STRIP2 chr7:129102881 5'GT 129102881 Upstream 17bp
chr8 22054871 22054871 1 + G T SARC 22054853 + 22054833 22054873 41 GAAGCCCGAGGTCATCACCTCCCAGTACAACAACATGCGCG GAAGCCCGAGGTCATCACCTCCCAGTACAACAACATGCTCG < 41bp 1 0.14831527641047 1 0.168311834335327 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22054853 chr8:22054871 nonsynonymous SNV 0.996 3 39 hm5C_associated_SNPs_32243 0 0 1 0 1 BMP1 chr8:22054933 5'GT 22054933 Upstream 63bp
chr9 20951089 20951089 1 + G T SARC 20951095 + 20951075 20951115 41 CTCAAGTCAAAGTAGAGCCTCTGGTAAGATTAAAGTCATAA CTCAAGTCAAAGTATAGCCTCTGGTAAGATTAAAGTCATAA < 41bp 1 0.160072665615838 1 0.102571159601212 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20951095 chr9:20951089 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_32244 0 0 0 0 2 FOCAD chr9:20950995 3'AG 20950995 Downstream 95bp
chr9 20951089 20951089 1 + G T SARC 20951095 + 20951075 20951115 41 CTCAAGTCAAAGTAGAGCCTCTGGTAAGATTAAAGTCATAA CTCAAGTCAAAGTATAGCCTCTGGTAAGATTAAAGTCATAA < 41bp 1 0.160072665615838 1 0.102571159601212 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20951095 chr9:20951089 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_32244 0 0 0 0 2 FOCAD chr9:20951097 5'GT 20951097 Upstream 9bp
chr9 72003130 72003130 1 + G T SARC 72003140 + 72003120 72003160 41 ACTGGATCTGGCTGCAGTGACTCTGAGGAGAGGCTTGAGAT ACTGGATCTGTCTGCAGTGACTCTGAGGAGAGGCTTGAGAT < 41bp 1 0.549470173187797 1 0.286175906658173 experiment 0.901059653624406 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM189A2 ENSG00000135063 CDS Human protein_coding chr9:72003140 chr9:72003130 nonsynonymous SNV 0.992 1 11 hm5C_associated_SNPs_32245 0 0 0 0 1 FAM189A2 chr9:72003074 3'AG 72003074 Downstream 57bp
chr9 96427994 96427994 1 + G T SARC 96427976 + 96427956 96427996 41 CTTCTGCCCTAGCTCCAAGGCTCTCAGGCCCCCGACGAGCC CTTCTGCCCTAGCTCCAAGGCTCTCAGGCCCCCGACGATCC < 41bp 1 0.150847360246623 1 0.0620793402194977 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96427976 chr9:96427994 nonsynonymous SNV 0.373 4 39 hm5C_associated_SNPs_32246 0 0 1 0 1 PHF2 chr9:96427968 3'AG 96427968 Downstream 27bp
chr9 100425261 100425261 1 + G T SARC 100425251 + 100425231 100425271 41 AAAAGGTTTCATGAAGTCTTCAAAACCCTAGCTGAAAGTGA AAAAGGTTTCATGAAGTCTTCAAAACCCTATCTGAAAGTGA < 41bp 1 0.233498005095878 1 0.428771585226059 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100425251 chr9:100425261 nonsynonymous SNV 0.993 1 31 hm5C_associated_SNPs_32247 0 0 1 0 2 NCBP1 chr9:100425236 3'AG 100425236 Downstream 26bp
chr9 100425261 100425261 1 + G T SARC 100425251 + 100425231 100425271 41 AAAAGGTTTCATGAAGTCTTCAAAACCCTAGCTGAAAGTGA AAAAGGTTTCATGAAGTCTTCAAAACCCTATCTGAAAGTGA < 41bp 1 0.233498005095878 1 0.428771585226059 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100425251 chr9:100425261 nonsynonymous SNV 0.993 1 31 hm5C_associated_SNPs_32247 0 0 1 0 2 NCBP1 chr9:100425329 5'GT 100425329 Upstream 69bp
chr9 131830105 131830105 1 + G T SARC 131830119 + 131830099 131830139 41 CCTGCGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGG CCTGCGTCCCGAGACCTGGGCCACAACACGGCTGGAGCTGG < 41bp 1 0.178025605116727 1 0.0677765309810638 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830119 chr9:131830105 synonymous SNV . 0 7 hm5C_associated_SNPs_32248 0 0 1 0 2 MIGA2 chr9:131830052 3'AG 131830052 Downstream 54bp
chr9 131830105 131830105 1 + G T SARC 131830119 + 131830099 131830139 41 CCTGCGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGG CCTGCGTCCCGAGACCTGGGCCACAACACGGCTGGAGCTGG < 41bp 1 0.178025605116727 1 0.0677765309810638 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830119 chr9:131830105 synonymous SNV . 0 7 hm5C_associated_SNPs_32248 0 0 1 0 2 MIGA2 chr9:131830150 5'GT 131830150 Upstream 46bp
chr9 131830105 131830105 1 + G T SARC 131830120 + 131830100 131830140 41 CTGCGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGGA CTGCGTCCCGAGACCTGGGCCACAACACGGCTGGAGCTGGA < 41bp 1 0.379946760289327 1 0.227197021245956 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830120 chr9:131830105 synonymous SNV . 0 6 hm5C_associated_SNPs_32249 0 0 1 0 2 MIGA2 chr9:131830052 3'AG 131830052 Downstream 54bp
chr9 131830105 131830105 1 + G T SARC 131830120 + 131830100 131830140 41 CTGCGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGGA CTGCGTCCCGAGACCTGGGCCACAACACGGCTGGAGCTGGA < 41bp 1 0.379946760289327 1 0.227197021245956 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830120 chr9:131830105 synonymous SNV . 0 6 hm5C_associated_SNPs_32249 0 0 1 0 2 MIGA2 chr9:131830150 5'GT 131830150 Upstream 46bp
chr9 134322024 134322024 1 + G T SARC 134322022 + 134322002 134322042 41 TACATACCATGACATGCTTCCTGCTTTTGTAAGTCTTCAGA TACATACCATGACATGCTTCCTTCTTTTGTAAGTCTTCAGA < 41bp 1 0.0357070858839287 1 0.0596597790718079 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134322022 chr9:134322024 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_32250 0 0 1 0 1 PRRC2B chr9:134322029 5'GT 134322029 Upstream 6bp
chr10 73992844 73992844 1 + G T SARC 73992860 + 73992840 73992880 41 AGCAGCTGCTGGGATTCACCCCCTCTTCAGGTTGATACTGC AGCATCTGCTGGGATTCACCCCCTCTTCAGGTTGATACTGC < 41bp 1 0.159533095612423 1 0.123084545135498 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANAPC16 ENSG00000166295 CDS Human protein_coding chr10:73992860 chr10:73992844 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_32256 0 0 1 0 1 ANAPC16 chr10:73992759 3'AG 73992759 Downstream 86bp
chr10 105172947 105172947 1 + G T SARC 105172958 + 105172938 105172978 41 CTTCCTACAGCCTGGACGCCCACTCACCCGACTCTCTTGCC CTTCCTACATCCTGGACGCCCACTCACCCGACTCTCTTGCC < 41bp 1 0.0994262386471392 1 0.0869990289211273 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105172958 chr10:105172947 nonsynonymous SNV 0.773 0 10 hm5C_associated_SNPs_32257 0 0 1 0 1 PDCD11 chr10:105172873 3'AG 105172873 Downstream 75bp
chr10 126505161 126505161 1 + G T SARC 126505159 + 126505139 126505179 41 TTACAGAAATCCATAACCATCAGCCTTGTTCAAAACTTTTT TTACAGAAATCCATAACCATCATCCTTGTTCAAAACTTTTT < 41bp 1 0.0889759440942272 1 0.0500324070453644 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126505159 chr10:126505161 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_32259 0 0 1 0 2 ABRAXAS2 chr10:126505145 3'AG 126505145 Downstream 17bp
chr10 126505161 126505161 1 + G T SARC 126505159 + 126505139 126505179 41 TTACAGAAATCCATAACCATCAGCCTTGTTCAAAACTTTTT TTACAGAAATCCATAACCATCATCCTTGTTCAAAACTTTTT < 41bp 1 0.0889759440942272 1 0.0500324070453644 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126505159 chr10:126505161 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_32259 0 0 1 0 2 ABRAXAS2 chr10:126505181 5'GT 126505181 Upstream 21bp
chr11 34129827 34129827 1 + G T SARC 34129843 + 34129823 34129863 41 AGTAGCTGAGCGGCAAAGATCTCTCTTTGTTGTAGTTGGGG AGTATCTGAGCGGCAAAGATCTCTCTTTGTTGTAGTTGGGG < 41bp 1 0.169011768533011 1 0.146189719438553 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129843 chr11:34129827 nonsynonymous SNV 0.928 0 5 hm5C_associated_SNPs_32260 0 0 1 0 2 NAT10 chr11:34129758 3'AG 34129758 Downstream 70bp
chr11 34129827 34129827 1 + G T SARC 34129843 + 34129823 34129863 41 AGTAGCTGAGCGGCAAAGATCTCTCTTTGTTGTAGTTGGGG AGTATCTGAGCGGCAAAGATCTCTCTTTGTTGTAGTTGGGG < 41bp 1 0.169011768533011 1 0.146189719438553 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129843 chr11:34129827 nonsynonymous SNV 0.928 0 5 hm5C_associated_SNPs_32260 0 0 1 0 2 NAT10 chr11:34129880 5'GT 34129880 Upstream 54bp
chr11 61111363 61111363 1 + G T SARC 61111346 + 61111326 61111366 41 AGATGCTGAAACCACTGCAGCAGCCTGGCCTAACGTGGCTG AGATGCTGAAACCACTGCAGCAGCCTGGCCTAACGTGTCTG < 41bp 1 0.218004019466202 1 0.303277313709259 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61111346 chr11:61111363 nonsynonymous SNV 0.151 0 38 hm5C_associated_SNPs_32261 0 0 1 0 2 TKFC chr11:61111328 3'AG 61111328 Downstream 36bp
chr11 61111363 61111363 1 + G T SARC 61111346 + 61111326 61111366 41 AGATGCTGAAACCACTGCAGCAGCCTGGCCTAACGTGGCTG AGATGCTGAAACCACTGCAGCAGCCTGGCCTAACGTGTCTG < 41bp 1 0.218004019466202 1 0.303277313709259 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61111346 chr11:61111363 nonsynonymous SNV 0.151 0 38 hm5C_associated_SNPs_32261 0 0 1 0 2 TKFC chr11:61111447 5'GT 61111447 Upstream 85bp
chr11 61897289 61897289 1 + G T SARC 61897299 + 61897279 61897319 41 AGCCAGCTGAGCTCCCGACGCCTCCGCAGCAAGGACAGTGT AGCCAGCTGATCTCCCGACGCCTCCGCAGCAAGGACAGTGT < 41bp 1 0.0451564245244923 1 0.178869098424911 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61897299 chr11:61897289 nonsynonymous SNV 0.771 0 11 hm5C_associated_SNPs_32262 0 0 1 0 1 INCENP chr11:61897254 3'AG 61897254 Downstream 36bp
chr11 65161555 65161555 1 + G T SARC 65161556 + 65161536 65161576 41 GGAACGTGTTCTTCCCAAAGCGGCGGGAGCTCCAGGTGAGG GGAACGTGTTCTTCCCAAATCGGCGGGAGCTCCAGGTGAGG < 41bp 1 0.749194494696898 1 0.773431062698364 experiment 0.501611010606205 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65161556 chr11:65161555 nonsynonymous SNV 0.951 1 20 hm5C_associated_SNPs_32263 0 0 1 0 2 FRMD8 chr11:65161512 3'AG 65161512 Downstream 44bp
chr11 65161555 65161555 1 + G T SARC 65161556 + 65161536 65161576 41 GGAACGTGTTCTTCCCAAAGCGGCGGGAGCTCCAGGTGAGG GGAACGTGTTCTTCCCAAATCGGCGGGAGCTCCAGGTGAGG < 41bp 1 0.749194494696898 1 0.773431062698364 experiment 0.501611010606205 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65161556 chr11:65161555 nonsynonymous SNV 0.951 1 20 hm5C_associated_SNPs_32263 0 0 1 0 2 FRMD8 chr11:65161570 5'GT 65161570 Upstream 16bp
chr11 67047153 67047153 1 + G T SARC 67047163 + 67047143 67047183 41 AGAAGCAGGTGCCTCCGGATCTCTTCCAGGTGTGTGCCTCC AGAAGCAGGTTCCTCCGGATCTCTTCCAGGTGTGTGCCTCC < 41bp 1 0.161935335206759 1 0.223228365182877 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67047163 chr11:67047153 synonymous SNV . 0 11 hm5C_associated_SNPs_32264 0 0 1 0 2 GRK2 chr11:67047097 3'AG 67047097 Downstream 57bp
chr11 67047153 67047153 1 + G T SARC 67047163 + 67047143 67047183 41 AGAAGCAGGTGCCTCCGGATCTCTTCCAGGTGTGTGCCTCC AGAAGCAGGTTCCTCCGGATCTCTTCCAGGTGTGTGCCTCC < 41bp 1 0.161935335206759 1 0.223228365182877 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67047163 chr11:67047153 synonymous SNV . 0 11 hm5C_associated_SNPs_32264 0 0 1 0 2 GRK2 chr11:67047171 5'GT 67047171 Upstream 19bp
chr11 67052433 67052433 1 + G T SARC 67052439 + 67052419 67052459 41 AACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCCCGGTAAG AACCGCCTCGAGTGTCGGGGCGAGGGCGAGGCCCCGGTAAG < 41bp 1 0.676143032012829 1 0.924732804298401 experiment 0.647713935974343 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052439 chr11:67052433 nonsynonymous SNV 0.984 4 15 hm5C_associated_SNPs_32265 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 22bp
chr11 67052433 67052433 1 + G T SARC 67052450 + 67052430 67052470 41 GTGGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCG GTGTCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCG < 41bp 1 0.479092669168646 1 0.676627993583679 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052450 chr11:67052433 nonsynonymous SNV 0.984 4 4 hm5C_associated_SNPs_32266 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 22bp
chr11 67052433 67052433 1 + G T SARC 67052451 + 67052431 67052471 41 TGGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGG TGTCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGG < 41bp 1 0.732244020538719 1 0.818022131919861 experiment 0.535511958922562 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052451 chr11:67052433 nonsynonymous SNV 0.984 4 3 hm5C_associated_SNPs_32267 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 22bp
chr11 67052433 67052433 1 + G T SARC 67052452 + 67052432 67052472 41 GGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGGG GTCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGGG < 41bp 1 0.491920709975028 1 0.707907617092133 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052452 chr11:67052433 nonsynonymous SNV 0.984 4 2 hm5C_associated_SNPs_32268 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 22bp
chr11 67052433 67052433 1 + G T SARC 67052453 + 67052433 67052473 41 GCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGGGG TCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGGGG < 41bp 1 0.72853842505008 1 0.553720474243164 experiment 0.542923149899841 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052453 chr11:67052433 nonsynonymous SNV 0.984 4 1 hm5C_associated_SNPs_32269 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 22bp
chr11 70275269 70275269 1 + G T SARC 70275262 + 70275242 70275282 41 GGAGAGAGCCCAGCGGATGGCCAAGGAGCGGCAGGAGCAGG GGAGAGAGCCCAGCGGATGGCCAAGGATCGGCAGGAGCAGG < 41bp 1 0.424277428339373 1 0.323982119560242 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70275262 chr11:70275269 nonsynonymous SNV 0.986 0 28 hm5C_associated_SNPs_32270 0 0 1 0 1 CTTN chr11:70275305 5'GT 70275305 Upstream 37bp
chr11 130003567 130003567 1 + G T SARC 130003563 + 130003543 130003583 41 TGATTGAAGAAAGGAGGAACCAAAGCCTCTCTCTGCTCTAC TGATTGAAGAAAGGAGGAACCAAATCCTCTCTCTGCTCTAC < 41bp 1 0.291257420357697 1 0.411921560764313 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130003563 chr11:130003567 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_32272 0 0 1 0 2 APLP2 chr11:130003524 3'AG 130003524 Downstream 44bp
chr11 130003567 130003567 1 + G T SARC 130003563 + 130003543 130003583 41 TGATTGAAGAAAGGAGGAACCAAAGCCTCTCTCTGCTCTAC TGATTGAAGAAAGGAGGAACCAAATCCTCTCTCTGCTCTAC < 41bp 1 0.291257420357697 1 0.411921560764313 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130003563 chr11:130003567 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_32272 0 0 1 0 2 APLP2 chr11:130003623 5'GT 130003623 Upstream 57bp
chr11 130003567 130003567 1 + G T SARC 130003575 + 130003555 130003595 41 GGAGGAACCAAAGCCTCTCTCTGCTCTACAAAGTACCTTAT GGAGGAACCAAATCCTCTCTCTGCTCTACAAAGTACCTTAT < 41bp 1 0.430258540428316 1 0.632368803024292 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130003575 chr11:130003567 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_32273 0 0 1 0 2 APLP2 chr11:130003524 3'AG 130003524 Downstream 44bp
chr11 130003567 130003567 1 + G T SARC 130003575 + 130003555 130003595 41 GGAGGAACCAAAGCCTCTCTCTGCTCTACAAAGTACCTTAT GGAGGAACCAAATCCTCTCTCTGCTCTACAAAGTACCTTAT < 41bp 1 0.430258540428316 1 0.632368803024292 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130003575 chr11:130003567 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_32273 0 0 1 0 2 APLP2 chr11:130003623 5'GT 130003623 Upstream 57bp
chr12 6344439 6344439 1 + G T SARC 6344427 + 6344407 6344447 41 GTCCAGGAGTTTTACAAGGACACCTACAACAAGCTGAAAAC GTCCAGGAGTTTTACAAGGACACCTACAACAATCTGAAAAC < 41bp 1 0.439189957809845 1 0.249540030956268 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CD9 ENSG00000010278 CDS Human protein_coding chr12:6344427 chr12:6344439 nonsynonymous SNV 0.765 1 33 hm5C_associated_SNPs_32274 0 0 1 0 2 CD9 chr12:6344395 3'AG 6344395 Downstream 45bp
chr12 6344439 6344439 1 + G T SARC 6344427 + 6344407 6344447 41 GTCCAGGAGTTTTACAAGGACACCTACAACAAGCTGAAAAC GTCCAGGAGTTTTACAAGGACACCTACAACAATCTGAAAAC < 41bp 1 0.439189957809845 1 0.249540030956268 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CD9 ENSG00000010278 CDS Human protein_coding chr12:6344427 chr12:6344439 nonsynonymous SNV 0.765 1 33 hm5C_associated_SNPs_32274 0 0 1 0 2 CD9 chr12:6344493 5'GT 6344493 Upstream 55bp
chr12 7027294 7027294 1 + G T SARC 7027310 + 7027290 7027330 41 GGTGGCTTTGCCCCCAATATCCTGGAGAACAGTGAAGGTGA GGTGTCTTTGCCCCCAATATCCTGGAGAACAGTGAAGGTGA < 41bp 1 0.45456788750393 1 0.561674535274506 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ENO2 ENSG00000111674 CDS Human protein_coding chr12:7027310 chr12:7027294 nonsynonymous SNV 0.997 3 5 hm5C_associated_SNPs_32275 0 0 1 0 1 ENO2 chr12:7027326 5'GT 7027326 Upstream 33bp
chr12 48531601 48531601 1 + G T SARC 48531590 + 48531570 48531610 41 GTAGTGAGCCTCTCTGGTAACCAGGCTGTGCGCCTGCCCCT GTAGTGAGCCTCTCTGGTAACCAGGCTGTGCTCCTGCCCCT < 41bp 1 0.738206907780532 1 0.432977974414825 experiment 0.523586184438936 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control PFKM ENSG00000152556 CDS Human protein_coding chr12:48531590 chr12:48531601 nonsynonymous SNV 0.999 4 32 hm5C_associated_SNPs_32276 0 0 0 0 2 PFKM chr12:48531504 3'AG 48531504 Downstream 98bp
chr12 48531601 48531601 1 + G T SARC 48531590 + 48531570 48531610 41 GTAGTGAGCCTCTCTGGTAACCAGGCTGTGCGCCTGCCCCT GTAGTGAGCCTCTCTGGTAACCAGGCTGTGCTCCTGCCCCT < 41bp 1 0.738206907780532 1 0.432977974414825 experiment 0.523586184438936 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control PFKM ENSG00000152556 CDS Human protein_coding chr12:48531590 chr12:48531601 nonsynonymous SNV 0.999 4 32 hm5C_associated_SNPs_32276 0 0 0 0 2 PFKM chr12:48531629 5'GT 48531629 Upstream 29bp
chr12 53433481 53433481 1 + G T SARC 53433478 + 53433458 53433498 41 CAAAGAAACCTGAGGAAAATCCAGCTTCCGTAAGTGTTGAA CAAAGAAACCTGAGGAAAATCCATCTTCCGTAAGTGTTGAA < 41bp 1 0.0814255886006697 1 0.0894257724285126 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53433478 chr12:53433481 nonsynonymous SNV 0.948 1 24 hm5C_associated_SNPs_32279 0 0 1 0 2 EIF4B chr12:53433414 3'AG 53433414 Downstream 68bp
chr12 53433481 53433481 1 + G T SARC 53433478 + 53433458 53433498 41 CAAAGAAACCTGAGGAAAATCCAGCTTCCGTAAGTGTTGAA CAAAGAAACCTGAGGAAAATCCATCTTCCGTAAGTGTTGAA < 41bp 1 0.0814255886006697 1 0.0894257724285126 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53433478 chr12:53433481 nonsynonymous SNV 0.948 1 24 hm5C_associated_SNPs_32279 0 0 1 0 2 EIF4B chr12:53433486 5'GT 53433486 Upstream 6bp
chr12 93968582 93968582 1 + G T SARC 93968564 + 93968544 93968584 41 AAAAGAGGCACCAGAAGGAACTTTCTTGATTAGAGATAGCT AAAAGAGGCACCAGAAGGAACTTTCTTGATTAGAGATATCT < 41bp 1 0.066870898932359 1 0.0536777079105377 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SOCS2 ENSG00000120833 CDS Human protein_coding chr12:93968564 chr12:93968582 nonsynonymous SNV 0.996 5 39 hm5C_associated_SNPs_32280 0 0 1 2 1 SOCS2 chr12:93968498 3'AG 93968498 Downstream 85bp
chr12 104340683 104340683 1 + G T SARC 104340684 + 104340664 104340704 41 GAGATAGAATAGAAAGAATGCTTCGCCTCAGTTTGAACATT GAGATAGAATAGAAAGAATTCTTCGCCTCAGTTTGAACATT < 41bp 1 0.234207341947585 1 0.0898725092411041 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340684 chr12:104340683 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_32281 0 0 1 0 1 HSP90B1 chr12:104340719 5'GT 104340719 Upstream 37bp
chr12 104340683 104340683 1 + G T SARC 104340690 + 104340670 104340710 41 GAATAGAAAGAATGCTTCGCCTCAGTTTGAACATTGACCCT GAATAGAAAGAATTCTTCGCCTCAGTTTGAACATTGACCCT < 41bp 1 0.493310331241787 1 0.133467078208923 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340690 chr12:104340683 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_32282 0 0 1 0 1 HSP90B1 chr12:104340719 5'GT 104340719 Upstream 37bp
chr12 104340683 104340683 1 + G T SARC 104340692 + 104340672 104340712 41 ATAGAAAGAATGCTTCGCCTCAGTTTGAACATTGACCCTGA ATAGAAAGAATTCTTCGCCTCAGTTTGAACATTGACCCTGA < 41bp 1 0.277006624032491 1 0.251530766487122 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340692 chr12:104340683 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_32283 0 0 1 0 1 HSP90B1 chr12:104340719 5'GT 104340719 Upstream 37bp
chr12 104340683 104340683 1 + G T SARC 104340701 + 104340681 104340721 41 ATGCTTCGCCTCAGTTTGAACATTGACCCTGATGCAAAGGT ATTCTTCGCCTCAGTTTGAACATTGACCCTGATGCAAAGGT < 41bp 1 0.111642151332323 1 0.169773191213608 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340701 chr12:104340683 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_32284 0 0 1 0 1 HSP90B1 chr12:104340719 5'GT 104340719 Upstream 37bp
chr12 125603235 125603235 1 + G T SARC 125603220 + 125603200 125603240 41 TGTGGAACTGGATGGTGTCCCTTCTGGCCACAGGAGCGGCC TGTGGAACTGGATGGTGTCCCTTCTGGCCACAGGATCGGCC < 41bp 1 0.293313991140903 1 0.0455112755298615 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AACS ENSG00000081760 CDS Human protein_coding chr12:125603220 chr12:125603235 nonsynonymous SNV 0.006 1 36 hm5C_associated_SNPs_32285 0 0 1 1 1 AACS chr12:125603187 3'AG 125603187 Downstream 49bp
chr12 132334398 132334398 1 + G T SARC 132334394 + 132334374 132334414 41 ATAACGTAGAGGAAGGATACCCGCGCCCCGTCTCCGACTTC ATAACGTAGAGGAAGGATACCCGCTCCCCGTCTCCGACTTC < 41bp 1 0.133528138527841 1 0.0569112300872803 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MMP17 ENSG00000198598 CDS Human protein_coding chr12:132334394 chr12:132334398 nonsynonymous SNV 0.935 3 25 hm5C_associated_SNPs_32286 0 0 1 0 1 MMP17 chr12:132334347 3'AG 132334347 Downstream 52bp
chr14 58669631 58669631 1 + G T SARC 58669641 + 58669621 58669661 41 GATAAAAAGAGCTGGGATGCCTAAGGTATTTAAAAAAAAAT GATAAAAAGATCTGGGATGCCTAAGGTATTTAAAAAAAAAT < 41bp 1 0.376259971540845 1 0.50484424829483 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACTR10 ENSG00000131966 CDS Human protein_coding chr14:58669641 chr14:58669631 nonsynonymous SNV 0.992 2 11 hm5C_associated_SNPs_32287 0 0 1 0 2 ACTR10 chr14:58669573 3'AG 58669573 Downstream 59bp
chr14 58669631 58669631 1 + G T SARC 58669641 + 58669621 58669661 41 GATAAAAAGAGCTGGGATGCCTAAGGTATTTAAAAAAAAAT GATAAAAAGATCTGGGATGCCTAAGGTATTTAAAAAAAAAT < 41bp 1 0.376259971540845 1 0.50484424829483 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACTR10 ENSG00000131966 CDS Human protein_coding chr14:58669641 chr14:58669631 nonsynonymous SNV 0.992 2 11 hm5C_associated_SNPs_32287 0 0 1 0 2 ACTR10 chr14:58669645 5'GT 58669645 Upstream 15bp
chr14 64628970 64628970 1 + G T SARC 64628971 + 64628951 64628991 41 ACAACCTGGCAGAGATCCTGCCCCCAGCCCTGCAGGACATA ACAACCTGGCAGAGATCCTTCCCCCAGCCCTGCAGGACATA < 41bp 1 0.0949674862316667 1 0.078144758939743 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64628971 chr14:64628970 synonymous SNV . 0 20 hm5C_associated_SNPs_32288 0 0 1 0 1 SYNE2 chr14:64628994 5'GT 64628994 Upstream 25bp
chr14 64990076 64990076 1 + G T SARC 64990092 + 64990072 64990112 41 GAGAGCGTCAGTTGCGACTGCACAATGATATGCACAAAGGC GAGATCGTCAGTTGCGACTGCACAATGATATGCACAAAGGC < 41bp 1 0.596603630214285 1 0.560886204242706 experiment 0.806792739571429 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZBTB1 ENSG00000126804 CDS Human protein_coding chr14:64990092 chr14:64990076 nonsynonymous SNV 0.997 2 5 hm5C_associated_SNPs_32289 0 0 1 0 1 ZBTB1 chr14:64990120 5'GT 64990120 Upstream 45bp
chr14 72128092 72128092 1 + G T SARC 72128103 + 72128083 72128123 41 TGGAGCACAGCCATTCAGCCCAAAAAACATCCGATCCCACT TGGAGCACATCCATTCAGCCCAAAAAACATCCGATCCCACT < 41bp 1 0.278281661559039 1 0.414398789405823 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72128103 chr14:72128092 nonsynonymous SNV 0.987 2 10 hm5C_associated_SNPs_32290 0 0 0 0 2 SIPA1L1 chr14:72128027 3'AG 72128027 Downstream 66bp
chr14 72128092 72128092 1 + G T SARC 72128103 + 72128083 72128123 41 TGGAGCACAGCCATTCAGCCCAAAAAACATCCGATCCCACT TGGAGCACATCCATTCAGCCCAAAAAACATCCGATCCCACT < 41bp 1 0.278281661559039 1 0.414398789405823 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72128103 chr14:72128092 nonsynonymous SNV 0.987 2 10 hm5C_associated_SNPs_32290 0 0 0 0 2 SIPA1L1 chr14:72128184 5'GT 72128184 Upstream 93bp
chr14 75936046 75936046 1 + G T SARC 75936062 + 75936042 75936082 41 AGGAGCTGAAGCAGGAGCGGCAGCAGCTCATCCTGATGCTG AGGATCTGAAGCAGGAGCGGCAGCAGCTCATCCTGATGCTG < 41bp 1 0.60548594572231 1 0.46962958574295 experiment 0.78902810855538 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JDP2 ENSG00000140044 CDS Human protein_coding chr14:75936062 chr14:75936046 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_32291 0 0 0 0 1 JDP2 chr14:75935993 3'AG 75935993 Downstream 54bp
chr14 75936046 75936046 1 + G T SARC 75936065 + 75936045 75936085 41 AGCTGAAGCAGGAGCGGCAGCAGCTCATCCTGATGCTGAAC ATCTGAAGCAGGAGCGGCAGCAGCTCATCCTGATGCTGAAC < 41bp 1 0.400780511028323 1 0.675119638442993 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JDP2 ENSG00000140044 CDS Human protein_coding chr14:75936065 chr14:75936046 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_32292 0 0 0 0 1 JDP2 chr14:75935993 3'AG 75935993 Downstream 54bp
chr14 104565262 104565262 1 + G T SARC 104565260 + 104565240 104565280 41 GGTAGACGCTCGGAGGTTCGCAGCTTTCTGCTCCCCGAACC GGTAGACGCTCGGAGGTTCGCATCTTTCTGCTCCCCGAACC < 41bp 1 0.508887774454809 1 0.0984589755535126 experiment 0.982224451090382 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control ASPG ENSG00000166183 CDS Human protein_coding chr14:104565260 chr14:104565262 nonsynonymous SNV 0.916 3 23 hm5C_associated_SNPs_32294 0 0 0 0 2 ASPG chr14:104565190 3'AG 104565190 Downstream 73bp
chr14 104565262 104565262 1 + G T SARC 104565260 + 104565240 104565280 41 GGTAGACGCTCGGAGGTTCGCAGCTTTCTGCTCCCCGAACC GGTAGACGCTCGGAGGTTCGCATCTTTCTGCTCCCCGAACC < 41bp 1 0.508887774454809 1 0.0984589755535126 experiment 0.982224451090382 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control ASPG ENSG00000166183 CDS Human protein_coding chr14:104565260 chr14:104565262 nonsynonymous SNV 0.916 3 23 hm5C_associated_SNPs_32294 0 0 0 0 2 ASPG chr14:104565316 5'GT 104565316 Upstream 55bp
chr15 69714743 69714743 1 + G T SARC 69714749 + 69714729 69714769 41 GTCAGAAAAGAGAAGCTATGCCCAATCCAAAGACTTCTTCT GTCAGAAAAGAGAATCTATGCCCAATCCAAAGACTTCTTCT < 41bp 1 0.463755096552323 1 0.0466523766517639 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69714749 chr15:69714743 nonsynonymous SNV 0.994 0 15 hm5C_associated_SNPs_32295 0 0 1 0 2 KIF23 chr15:69714665 3'AG 69714665 Downstream 79bp
chr15 69714743 69714743 1 + G T SARC 69714749 + 69714729 69714769 41 GTCAGAAAAGAGAAGCTATGCCCAATCCAAAGACTTCTTCT GTCAGAAAAGAGAATCTATGCCCAATCCAAAGACTTCTTCT < 41bp 1 0.463755096552323 1 0.0466523766517639 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69714749 chr15:69714743 nonsynonymous SNV 0.994 0 15 hm5C_associated_SNPs_32295 0 0 1 0 2 KIF23 chr15:69714774 5'GT 69714774 Upstream 32bp
chr15 100215645 100215645 1 + G T SARC 100215637 + 100215617 100215657 41 CACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGTC CACTACAGACCTCACAGTGCCAAATGGATCTGGAAGCAGTC < 41bp 1 0.27714192232468 1 0.414067476987839 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEF2A ENSG00000068305 CDS Human protein_coding chr15:100215637 chr15:100215645 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_32297 0 0 1 0 2 MEF2A chr15:100215604 3'AG 100215604 Downstream 42bp
chr15 100215645 100215645 1 + G T SARC 100215637 + 100215617 100215657 41 CACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGTC CACTACAGACCTCACAGTGCCAAATGGATCTGGAAGCAGTC < 41bp 1 0.27714192232468 1 0.414067476987839 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEF2A ENSG00000068305 CDS Human protein_coding chr15:100215637 chr15:100215645 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_32297 0 0 1 0 2 MEF2A chr15:100215663 5'GT 100215663 Upstream 19bp
chr16 723007 723007 1 + G T SARC 723004 + 722984 723024 41 GCCCGAAGGTGTCGCGGTGTCTGGCCCATCACCGGCCGAGT GCCCGAAGGTGTCGCGGTGTCTGTCCCATCACCGGCCGAGT < 41bp 1 0.345405798414215 1 0.219680368900299 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:723004 chr16:723007 nonsynonymous SNV 0.003 2 24 hm5C_associated_SNPs_32298 0 0 1 0 1 RHOT2 chr16:722928 3'AG 722928 Downstream 80bp
chr16 31196311 31196311 1 + G T SARC 31196312 + 31196292 31196332 41 AGTGGTGGTGGCAGTGGTGGCGGTTATGGCAATCAAGACCA AGTGGTGGTGGCAGTGGTGTCGGTTATGGCAATCAAGACCA < 41bp 1 0.689074731742853 1 0.451544374227524 experiment 0.621850536514293 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control FUS ENSG00000089280 CDS Human protein_coding chr16:31196312 chr16:31196311 nonsynonymous SNV 0.764 4 20 hm5C_associated_SNPs_32299 0 0 1 0 1 FUS chr16:31196260 3'AG 31196260 Downstream 52bp
chr16 57075436 57075436 1 + G T SARC 57075442 + 57075422 57075462 41 AAGCACCTAGAGCAGCTCTGCAAGGCTCTGGGAGGAAGCTG AAGCACCTAGAGCATCTCTGCAAGGCTCTGGGAGGAAGCTG < 41bp 1 0.512057809109566 1 0.270512610673904 experiment 0.975884381780868 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57075442 chr16:57075436 nonsynonymous SNV 0.253 1 15 hm5C_associated_SNPs_32300 0 0 0 0 2 NLRC5 chr16:57075397 3'AG 57075397 Downstream 40bp
chr16 57075436 57075436 1 + G T SARC 57075442 + 57075422 57075462 41 AAGCACCTAGAGCAGCTCTGCAAGGCTCTGGGAGGAAGCTG AAGCACCTAGAGCATCTCTGCAAGGCTCTGGGAGGAAGCTG < 41bp 1 0.512057809109566 1 0.270512610673904 experiment 0.975884381780868 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57075442 chr16:57075436 nonsynonymous SNV 0.253 1 15 hm5C_associated_SNPs_32300 0 0 0 0 2 NLRC5 chr16:57075486 5'GT 57075486 Upstream 51bp
chr16 67578995 67578995 1 + G T SARC 67578992 + 67578972 67579012 41 CAGTATGGTGCCCGCCTCTCCCTGCGCCAGCCAGGCTTGGC CAGTATGGTGCCCGCCTCTCCCTTCGCCAGCCAGGCTTGGC < 41bp 1 0.0240598369114881 1 0.0818909704685211 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578992 chr16:67578995 synonymous SNV . 0 24 hm5C_associated_SNPs_32301 0 0 1 0 1 RIPOR1 chr16:67579020 5'GT 67579020 Upstream 26bp
chr16 70589052 70589052 1 + G T SARC 70589071 + 70589051 70589091 41 AGCGACAAGTGGTGATTGCCCTGACAGGAGGAGAGCTGGTC ATCGACAAGTGGTGATTGCCCTGACAGGAGGAGAGCTGGTC < 41bp 1 0.304062013472657 1 0.115124017000198 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589071 chr16:70589052 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_32302 0 0 1 0 2 SF3B3 chr16:70588954 3'AG 70588954 Downstream 99bp
chr16 70589052 70589052 1 + G T SARC 70589071 + 70589051 70589091 41 AGCGACAAGTGGTGATTGCCCTGACAGGAGGAGAGCTGGTC ATCGACAAGTGGTGATTGCCCTGACAGGAGGAGAGCTGGTC < 41bp 1 0.304062013472657 1 0.115124017000198 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589071 chr16:70589052 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_32302 0 0 1 0 2 SF3B3 chr16:70589109 5'GT 70589109 Upstream 58bp
chr17 4720022 4720022 1 + G T SARC 4720020 + 4720000 4720040 41 TTATCACCAAGGACTGGGTGCAGCTGGACCGGCCTTTCGAA TTATCACCAAGGACTGGGTGCATCTGGACCGGCCTTTCGAA < 41bp 1 0.101630794797817 1 0.0488791465759277 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD2 ENSG00000129219 CDS Human protein_coding chr17:4720020 chr17:4720022 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_32303 0 0 1 0 1 PLD2 chr17:4720041 5'GT 4720041 Upstream 20bp
chr17 8172162 8172162 1 + G T SARC 8172177 + 8172157 8172197 41 GGAGTGCGCACGGGGAAGGTCAGGCCCAAGGAAGGCTGGGG GGAGTTCGCACGGGGAAGGTCAGGCCCAAGGAAGGCTGGGG < 41bp 1 0.520956061890432 1 0.753688454627991 experiment 0.958087876219137 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PFAS ENSG00000178921 CDS Human protein_coding chr17:8172177 chr17:8172162 nonsynonymous SNV 0.170 1 6 hm5C_associated_SNPs_32304 0 0 1 0 1 PFAS chr17:8172174 5'GT 8172174 Upstream 13bp
chr17 52991185 52991185 1 + G T SARC 52991196 + 52991176 52991216 41 TTAAGAAAGGCGTTCAGTTTCCTCCCTCAGAAGCAGAGGCT TTAAGAAAGTCGTTCAGTTTCCTCCCTCAGAAGCAGAGGCT < 41bp 1 0.148650872984997 1 0.0515132248401642 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52991196 chr17:52991185 nonsynonymous SNV 0.998 4 10 hm5C_associated_SNPs_32307 0 0 1 0 1 TOM1L1 chr17:52991234 5'GT 52991234 Upstream 50bp
chr17 57771127 57771127 1 + G T SARC 57771132 + 57771112 57771152 41 GCAGGACCCAGTGTTGCCGTCCCTCCCCAGGCACCTTTTGG GCAGGACCCAGTGTTTCCGTCCCTCCCCAGGCACCTTTTGG < 41bp 1 0.0332625157441174 1 0.0767486393451691 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57771132 chr17:57771127 nonsynonymous SNV 0.999 1 16 hm5C_associated_SNPs_32309 0 0 1 0 1 CLTC chr17:57771089 3'AG 57771089 Downstream 39bp
chr17 64685094 64685094 1 + G T SARC 64685113 + 64685093 64685133 41 AGGTGAGTACTACAACGTACCCATTCCGGAAGGGGACGAGG ATGTGAGTACTACAACGTACCCATTCCGGAAGGGGACGAGG < 41bp 1 0.0190773600776972 1 0.0385941863059998 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64685113 chr17:64685094 nonsynonymous SNV 0.994 3 2 hm5C_associated_SNPs_32320 0 0 1 0 2 PRKCA chr17:64685069 3'AG 64685069 Downstream 26bp
chr17 64685094 64685094 1 + G T SARC 64685113 + 64685093 64685133 41 AGGTGAGTACTACAACGTACCCATTCCGGAAGGGGACGAGG ATGTGAGTACTACAACGTACCCATTCCGGAAGGGGACGAGG < 41bp 1 0.0190773600776972 1 0.0385941863059998 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64685113 chr17:64685094 nonsynonymous SNV 0.994 3 2 hm5C_associated_SNPs_32320 0 0 1 0 2 PRKCA chr17:64685165 5'GT 64685165 Upstream 72bp
chr17 67515557 67515557 1 + G T SARC 67515562 + 67515542 67515582 41 CTGTCACCTTTTATGGCGCACTGTTTCGGGAGGTAGGTGAC CTGTCACCTTTTATGTCGCACTGTTTCGGGAGGTAGGTGAC < 41bp 1 0.171302539098084 1 0.0311522483825684 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K6 ENSG00000108984 CDS Human protein_coding chr17:67515562 chr17:67515557 nonsynonymous SNV 0.980 3 16 hm5C_associated_SNPs_32321 0 0 1 0 1 MAP2K6 chr17:67515573 5'GT 67515573 Upstream 17bp
chr17 73058322 73058322 1 + G T SARC 73058313 + 73058293 73058333 41 AATAATTCTACCAATGGCATCGTCATAGAGCCGAGCGAAAA AATAATTCTACCAATGGCATCGTCATAGATCCGAGCGAAAA < 41bp 1 0.306159666159146 1 0.495502591133118 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KCTD2 ENSG00000180901 CDS Human protein_coding chr17:73058313 chr17:73058322 nonsynonymous SNV 0.995 2 30 hm5C_associated_SNPs_32322 0 0 1 0 1 KCTD2 chr17:73058340 5'GT 73058340 Upstream 19bp
chr17 73481968 73481968 1 + G T SARC 73481976 + 73481956 73481996 41 TGTGGAGAAGCAGCTTCCTCCACCACAGTAACCGCTGCTCC TGTGGAGAAGCATCTTCCTCCACCACAGTAACCGCTGCTCC < 41bp 1 0.619120880792507 1 0.395333826541901 experiment 0.761758238414987 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73481976 chr17:73481968 nonsynonymous SNV 0.994 1 13 hm5C_associated_SNPs_32323 0 0 1 0 1 TMEM94 chr17:73481952 3'AG 73481952 Downstream 17bp
chr17 73814852 73814852 1 + G T SARC 73814851 + 73814831 73814871 41 GTCCCCGGCATGAATGCAAACGCTCTGCCCTTCTACCCCAC GTCCCCGGCATGAATGCAAACTCTCTGCCCTTCTACCCCAC < 41bp 1 0.323335954877482 1 0.120396465063095 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73814851 chr17:73814852 nonsynonymous SNV 0.985 3 22 hm5C_associated_SNPs_32324 0 0 1 0 1 UNK chr17:73814897 5'GT 73814897 Upstream 46bp
chr17 73816122 73816122 1 + G T SARC 73816120 + 73816100 73816140 41 TCTCCTCGCATTTCCTGCAGCAGCCCCAGGGCCACCTGAGT TCTCCTCGCATTTCCTGCAGCATCCCCAGGGCCACCTGAGT < 41bp 1 0.029776955186529 1 0.0491118133068085 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73816120 chr17:73816122 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_32325 0 0 1 0 1 UNK chr17:73816189 5'GT 73816189 Upstream 68bp
chr17 78087043 78087043 1 + G T SARC 78087058 + 78087038 78087078 41 AGCGAGCCGGCCCAGCAGGCCATGAGGAAGGCCCTCACCCT AGCGATCCGGCCCAGCAGGCCATGAGGAAGGCCCTCACCCT < 41bp 1 0.652299956753174 1 0.432698994874954 experiment 0.695400086493652 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78087058 chr17:78087043 nonsynonymous SNV 0.874 1 6 hm5C_associated_SNPs_32326 0 0 1 0 1 GAA chr17:78087017 3'AG 78087017 Downstream 27bp
chr18 12718626 12718626 1 + G T SARC 12718624 + 12718604 12718644 41 CATATCAGCGTAATGATCTGCAGCTTCGTAGGTATGTTTCT CATATCAGCGTAATGATCTGCATCTTCGTAGGTATGTTTCT < 41bp 1 0.149083842492486 1 0.0665208399295807 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMG2 ENSG00000128789 CDS Human protein_coding chr18:12718624 chr18:12718626 nonsynonymous SNV 0.878 4 23 hm5C_associated_SNPs_32327 0 0 1 0 1 PSMG2 chr18:12718634 5'GT 12718634 Upstream 9bp
chr19 3527707 3527707 1 + G T SARC 3527693 + 3527673 3527713 41 CCAAGATCCCCTTCAAGGTGCTGGACGCGCCCGAGCTGCAG CCAAGATCCCCTTCAAGGTGCTGGACGCGCCCGATCTGCAG < 41bp 1 0.746033215276544 1 0.28843691945076 experiment 0.507933569446912 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3527693 chr19:3527707 nonsynonymous SNV 0.954 1 35 hm5C_associated_SNPs_32332 0 0 0 0 1 FZR1 chr19:3527629 3'AG 3527629 Downstream 79bp
chr19 4268629 4268629 1 + G T SARC 4268640 + 4268620 4268660 41 TGACGCCTGGCGCGTCCTCCCTGAGCCAACTGGGTGCATAC TGACGCCTGTCGCGTCCTCCCTGAGCCAACTGGGTGCATAC < 41bp 1 0.751593441388931 1 0.358704626560211 experiment 0.496813117222138 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC94 ENSG00000105248 CDS Human protein_coding chr19:4268640 chr19:4268629 nonsynonymous SNV 0.001 1 10 hm5C_associated_SNPs_32334 0 0 1 0 1 CCDC94 chr19:4268581 3'AG 4268581 Downstream 49bp
chr19 8528387 8528387 1 + G T SARC 8528388 + 8528368 8528408 41 GCTTCCTCCAAAGGGATGTGCGTAAGTATCGTCTAGTTACT GCTTCCTCCAAAGGGATGTTCGTAAGTATCGTCTAGTTACT < 41bp 1 0.439198164492151 1 0.15023735165596 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8528388 chr19:8528387 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_32336 0 0 1 0 2 HNRNPM chr19:8528381 3'AG 8528381 Downstream 7bp
chr19 8528387 8528387 1 + G T SARC 8528388 + 8528368 8528408 41 GCTTCCTCCAAAGGGATGTGCGTAAGTATCGTCTAGTTACT GCTTCCTCCAAAGGGATGTTCGTAAGTATCGTCTAGTTACT < 41bp 1 0.439198164492151 1 0.15023735165596 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8528388 chr19:8528387 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_32336 0 0 1 0 2 HNRNPM chr19:8528388 5'GT 8528388 Upstream 2bp
chr19 14020758 14020758 1 + G T SARC 14020742 + 14020722 14020762 41 GGCTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCA GGCTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAATCTCA < 41bp 1 0.396553850510934 1 0.747779428958893 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020742 chr19:14020758 nonsynonymous SNV 0.991 3 37 hm5C_associated_SNPs_32337 0 0 1 0 1 CC2D1A chr19:14020771 5'GT 14020771 Upstream 14bp
chr19 14020758 14020758 1 + G T SARC 14020743 + 14020723 14020763 41 GCTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAA GCTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAATCTCAA < 41bp 1 0.251082492595212 1 0.502770245075226 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020743 chr19:14020758 nonsynonymous SNV 0.991 3 36 hm5C_associated_SNPs_32338 0 0 1 0 1 CC2D1A chr19:14020771 5'GT 14020771 Upstream 14bp
chr19 14020758 14020758 1 + G T SARC 14020744 + 14020724 14020764 41 CTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAA CTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAATCTCAAA < 41bp 1 0.14952183988149 1 0.320963621139526 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020744 chr19:14020758 nonsynonymous SNV 0.991 3 35 hm5C_associated_SNPs_32339 0 0 1 0 1 CC2D1A chr19:14020771 5'GT 14020771 Upstream 14bp
chr19 14020758 14020758 1 + G T SARC 14020745 + 14020725 14020765 41 TTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAAG TTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAATCTCAAAG < 41bp 1 0.467297559346137 1 0.4886314868927 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020745 chr19:14020758 nonsynonymous SNV 0.991 3 34 hm5C_associated_SNPs_32340 0 0 1 0 1 CC2D1A chr19:14020771 5'GT 14020771 Upstream 14bp
chr19 14030649 14030649 1 + G T SARC 14030636 + 14030616 14030656 41 CGACTGGCCACCCAGGCTTCCCCCCAATCCAGGGCCTGGAG CGACTGGCCACCCAGGCTTCCCCCCAATCCAGGTCCTGGAG < 41bp 1 0.0657523039384859 1 0.034568727016449 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14030636 chr19:14030649 nonsynonymous SNV 0.948 4 34 hm5C_associated_SNPs_32341 0 0 1 0 1 CC2D1A chr19:14030631 3'AG 14030631 Downstream 19bp
chr19 14561767 14561767 1 + G T SARC 14561750 + 14561730 14561770 41 CCAACCAGAAGCTGGGGCTGCTGCGGGAGGCTCTGGAGCGG CCAACCAGAAGCTGGGGCTGCTGCGGGAGGCTCTGGATCGG < 41bp 1 0.608945931882472 1 0.447457283735275 experiment 0.782108136235055 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14561750 chr19:14561767 nonsynonymous SNV 0.980 0 38 hm5C_associated_SNPs_32342 0 0 1 0 1 PKN1 chr19:14561708 3'AG 14561708 Downstream 60bp
chr19 14561767 14561767 1 + G T SARC 14561760 + 14561740 14561780 41 GCTGGGGCTGCTGCGGGAGGCTCTGGAGCGGAGACTTGGGG GCTGGGGCTGCTGCGGGAGGCTCTGGATCGGAGACTTGGGG < 41bp 1 0.255673244945637 1 0.279622942209244 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14561760 chr19:14561767 nonsynonymous SNV 0.980 0 28 hm5C_associated_SNPs_32343 0 0 1 0 1 PKN1 chr19:14561708 3'AG 14561708 Downstream 60bp
chr19 14562791 14562791 1 + G T SARC 14562777 + 14562757 14562797 41 CGCCCAGCCCGGGGCCTTTACAGCCGAAGCGGAAGCCTCAG CGCCCAGCCCGGGGCCTTTACAGCCGAAGCGGAATCCTCAG < 41bp 1 0.596141919444951 1 0.623228192329407 experiment 0.807716161110098 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562777 chr19:14562791 nonsynonymous SNV 0.997 3 35 hm5C_associated_SNPs_32344 0 0 1 0 1 PKN1 chr19:14562835 5'GT 14562835 Upstream 45bp
chr19 18255951 18255951 1 + G T SARC 18255949 + 18255929 18255969 41 CGGCCCCCCATCGTTATCCACAGCTCTGGCAAGAAGTACGG CGGCCCCCCATCGTTATCCACATCTCTGGCAAGAAGTACGG < 41bp 1 0.0761859462625609 1 0.0266624093055725 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18255949 chr19:18255951 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_32345 0 0 0 0 1 MAST3 chr19:18256039 5'GT 18256039 Upstream 89bp
chr19 18267007 18267007 1 + G T SARC 18267008 + 18266988 18267028 41 CCCGTGATGGGGCCCCTGAGCCAGGTGAGCAGCAAGCAGGG CCCGTGATGGGGCCCCTGATCCAGGTGAGCAGCAAGCAGGG < 41bp 1 0.735721467230735 1 0.907547056674957 experiment 0.528557065538531 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIK3R2 ENSG00000105647;ENSG00000268173 CDS Human other chr19:18267008 chr19:18267007 nonsynonymous SNV 0.923 0 20 hm5C_associated_SNPs_32346 0 0 0 0 1 PIK3R2 chr19:18267011 5'GT 18267011 Upstream 5bp
chr19 18856652 18856652 1 + G T SARC 18856662 + 18856642 18856682 41 CAATCCTCGGGCCTGGACACCAGCCGGACCACCCGGCACCA CAATCCTCGGTCCTGGACACCAGCCGGACCACCCGGCACCA < 41bp 1 0.328978816647358 1 0.233965009450912 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CRTC1 ENSG00000105662 CDS Human protein_coding chr19:18856662 chr19:18856652 nonsynonymous SNV 1.000 0 11 hm5C_associated_SNPs_32347 0 0 1 0 1 CRTC1 chr19:18856633 3'AG 18856633 Downstream 20bp
chr19 18856652 18856652 1 + G T SARC 18856665 + 18856645 18856685 41 TCCTCGGGCCTGGACACCAGCCGGACCACCCGGCACCATGG TCCTCGGTCCTGGACACCAGCCGGACCACCCGGCACCATGG < 41bp 1 0.529487026196126 1 0.559209108352661 experiment 0.941025947607747 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRTC1 ENSG00000105662 CDS Human protein_coding chr19:18856665 chr19:18856652 nonsynonymous SNV 1.000 0 8 hm5C_associated_SNPs_32348 0 0 1 0 1 CRTC1 chr19:18856633 3'AG 18856633 Downstream 20bp
chr19 41811635 41811635 1 + G T SARC 41811651 + 41811631 41811671 41 CACAGCCCCACCGCCTCCACCTCCACCACCACCTGCCTACA CACATCCCCACCGCCTCCACCTCCACCACCACCTGCCTACA < 41bp 1 0.587535778952951 1 0.940007448196411 experiment 0.824928442094098 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41811651 chr19:41811635 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_32349 0 0 1 0 2 HNRNPUL1 chr19:41811551 3'AG 41811551 Downstream 85bp
chr19 41811635 41811635 1 + G T SARC 41811651 + 41811631 41811671 41 CACAGCCCCACCGCCTCCACCTCCACCACCACCTGCCTACA CACATCCCCACCGCCTCCACCTCCACCACCACCTGCCTACA < 41bp 1 0.587535778952951 1 0.940007448196411 experiment 0.824928442094098 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41811651 chr19:41811635 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_32349 0 0 1 0 2 HNRNPUL1 chr19:41811581 3'AG 41811581 Downstream 55bp
chr19 42410874 42410874 1 + G T SARC 42410885 + 42410865 42410905 41 AGGAATTTTGCCGCCTGAGACCCCTCCTGTCTCAGCTTGGG AGGAATTTTTCCGCCTGAGACCCCTCCTGTCTCAGCTTGGG < 41bp 1 0.137423559081667 1 0.0573893189430237 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42410885 chr19:42410874 nonsynonymous SNV 0.989 1 10 hm5C_associated_SNPs_32350 0 0 1 0 2 ARHGEF1 chr19:42410855 3'AG 42410855 Downstream 20bp
chr19 42410874 42410874 1 + G T SARC 42410885 + 42410865 42410905 41 AGGAATTTTGCCGCCTGAGACCCCTCCTGTCTCAGCTTGGG AGGAATTTTTCCGCCTGAGACCCCTCCTGTCTCAGCTTGGG < 41bp 1 0.137423559081667 1 0.0573893189430237 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42410885 chr19:42410874 nonsynonymous SNV 0.989 1 10 hm5C_associated_SNPs_32350 0 0 1 0 2 ARHGEF1 chr19:42410955 5'GT 42410955 Upstream 82bp
chr19 50339145 50339145 1 + G T SARC 50339146 + 50339126 50339166 41 CTCCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAAC CTCCTGGACCCATCCTTCGTCCCCAGAACCCTGGGGCCAAC < 41bp 1 0.52000662566082 1 0.187844932079315 experiment 0.95998674867836 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339146 chr19:50339145 synonymous SNV 0.997 0 20 hm5C_associated_SNPs_32351 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 58bp
chr19 50339145 50339145 1 + G T SARC 50339147 + 50339127 50339167 41 TCCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACC TCCTGGACCCATCCTTCGTCCCCAGAACCCTGGGGCCAACC < 41bp 1 0.173790346462612 1 0.0891190767288208 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339147 chr19:50339145 synonymous SNV 0.997 0 19 hm5C_associated_SNPs_32352 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 58bp
chr19 50339145 50339145 1 + G T SARC 50339148 + 50339128 50339168 41 CCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACCC CCTGGACCCATCCTTCGTCCCCAGAACCCTGGGGCCAACCC < 41bp 1 0.518407973163102 1 0.208131670951843 experiment 0.963184053673796 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339148 chr19:50339145 synonymous SNV 0.997 0 18 hm5C_associated_SNPs_32353 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 58bp
chr19 50339145 50339145 1 + G T SARC 50339149 + 50339129 50339169 41 CTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACCCT CTGGACCCATCCTTCGTCCCCAGAACCCTGGGGCCAACCCT < 41bp 1 0.526562169053434 1 0.157688140869141 experiment 0.946875661893133 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339149 chr19:50339145 synonymous SNV 0.997 0 17 hm5C_associated_SNPs_32354 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 58bp
chr19 50339145 50339145 1 + G T SARC 50339162 + 50339142 50339182 41 TCGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCC TCGTCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCC < 41bp 1 0.0166160992732365 1 0.0558922290802002 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339162 chr19:50339145 synonymous SNV 0.997 0 4 hm5C_associated_SNPs_32355 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 58bp
chr19 50339145 50339145 1 + G T SARC 50339163 + 50339143 50339183 41 CGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCCT CGTCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCCT < 41bp 1 0.134552838684025 1 0.0556862950325012 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339163 chr19:50339145 synonymous SNV 0.997 0 3 hm5C_associated_SNPs_32356 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 58bp
chr20 60882496 60882496 1 + G T SARC 60882503 + 60882483 60882523 41 CCTCCAGGGAGCAGCTCCTCCTCCAGGTGAGCCTCATCGCT CCTCCAGGGAGCATCTCCTCCTCCAGGTGAGCCTCATCGCT < 41bp 1 0.732837081488288 1 0.963279843330383 experiment 0.534325837023425 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882503 chr20:60882496 nonsynonymous SNV 0.980 2 14 hm5C_associated_SNPs_32357 0 0 1 0 2 ADRM1 chr20:60882427 3'AG 60882427 Downstream 70bp
chr20 60882496 60882496 1 + G T SARC 60882503 + 60882483 60882523 41 CCTCCAGGGAGCAGCTCCTCCTCCAGGTGAGCCTCATCGCT CCTCCAGGGAGCATCTCCTCCTCCAGGTGAGCCTCATCGCT < 41bp 1 0.732837081488288 1 0.963279843330383 experiment 0.534325837023425 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882503 chr20:60882496 nonsynonymous SNV 0.980 2 14 hm5C_associated_SNPs_32357 0 0 1 0 2 ADRM1 chr20:60882508 5'GT 60882508 Upstream 13bp
chr21 47978246 47978246 1 + G T SARC 47978252 + 47978232 47978272 41 AAGGACCTGGGCCTGCCGGCCCGCGCCGTAAGCACCACGTT AAGGACCTGGGCCTTCCGGCCCGCGCCGTAAGCACCACGTT < 41bp 1 0.309992652060514 1 0.441160887479782 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47978252 chr21:47978246 synonymous SNV . 0 15 hm5C_associated_SNPs_32358 0 0 1 0 1 DIP2A chr21:47978306 5'GT 47978306 Upstream 61bp
chr22 30074249 30074249 1 + G T SARC 30074250 + 30074230 30074270 41 TTCAACCTCATTGGTGACAGCCTGTCTTTCGACTTCAAAGA TTCAACCTCATTGGTGACATCCTGTCTTTCGACTTCAAAGA < 41bp 1 0.134207930193517 1 0.14357516169548 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30074250 chr22:30074249 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_32359 0 0 1 0 2 NF2 chr22:30074185 3'AG 30074185 Downstream 65bp
chr22 30074249 30074249 1 + G T SARC 30074250 + 30074230 30074270 41 TTCAACCTCATTGGTGACAGCCTGTCTTTCGACTTCAAAGA TTCAACCTCATTGGTGACATCCTGTCTTTCGACTTCAAAGA < 41bp 1 0.134207930193517 1 0.14357516169548 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30074250 chr22:30074249 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_32359 0 0 1 0 2 NF2 chr22:30074312 5'GT 30074312 Upstream 64bp
chrX 48760269 48760269 1 + G T SARC 48760278 + 48760258 48760298 41 ACACCACAGCAGCTGGGCCCCTCTTCCAGCAGCGGCCGTAT ACACCACAGCATCTGGGCCCCTCTTCCAGCAGCGGCCGTAT < 41bp 1 0.428694310999186 1 0.0763109624385834 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48760278 chrX:48760269 nonsynonymous SNV 0.999 3 12 hm5C_associated_SNPs_32360 0 0 1 0 1 PQBP1 chrX:48760205 3'AG 48760205 Downstream 65bp
chr4 88967961 88967961 1 + G A SARC 88967960 + 88967940 88967980 41 TGGAAGAGATATTGGAAATTCGCATTCACAAACTACACTAT TGGAAGAGATATTGGAAATTCACATTCACAAACTACACTAT < 41bp 1 0.275525344248046 1 0.391426146030426 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKD2 ENSG00000118762 CDS Human protein_coding chr4:88967960 chr4:88967961 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_32363 0 0 1 0 1 PKD2 chr4:88968022 5'GT 88968022 Upstream 62bp
chr19 35225898 35225898 1 + G T SARC 35225902 + 35225882 35225922 41 CCCATCTCTAAGATAAGAGCCTGGAAAGAGGACTCTGTTGG CCCATCTCTAAGATAATAGCCTGGAAAGAGGACTCTGTTGG < 41bp 1 0.776623305926576 1 0.493177354335785 experiment 0.446753388146847 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF181 ENSG00000197841 UTR5 Human protein_coding chr19:35225902 chr19:35225898 . . 0 17 hm5C_associated_SNPs_32364 0 0 1 0 1 ZNF181 chr19:35225951 5'GT 35225951 Upstream 54bp
chr2 153494158 153494158 1 + T C SARC 153494168 + 153494148 153494188 41 TCTTCTTTCCTGTCTTTGTCCGGTTTGTGAAAGCATATAAG TCTTCTTTCCCGTCTTTGTCCGGTTTGTGAAAGCATATAAG < 41bp 1 0.163583594879515 1 0.142303884029388 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153494168 chr2:153494158 synonymous SNV . 0 11 hm5C_associated_SNPs_32365 0 0 0 0 2 FMNL2 chr2:153494087 3'AG 153494087 Downstream 72bp
chr2 153494158 153494158 1 + T C SARC 153494168 + 153494148 153494188 41 TCTTCTTTCCTGTCTTTGTCCGGTTTGTGAAAGCATATAAG TCTTCTTTCCCGTCTTTGTCCGGTTTGTGAAAGCATATAAG < 41bp 1 0.163583594879515 1 0.142303884029388 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153494168 chr2:153494158 synonymous SNV . 0 11 hm5C_associated_SNPs_32365 0 0 0 0 2 FMNL2 chr2:153494188 5'GT 153494188 Upstream 31bp
chr11 17316992 17316992 1 + A G SARC 17316973 + 17316953 17316993 41 ACATAGACAAGACAAAAGTACAAAATATTCACCCTGTGGAA ACATAGACAAGACAAAAGTACAAAATATTCACCCTGTGGGA < 41bp 1 0.63282382595038 1 0.0877411067485809 experiment 0.73435234809924 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUCB2 ENSG00000070081 CDS Human protein_coding chr11:17316973 chr11:17316992 nonsynonymous SNV 0.997 1 40 hm5C_associated_SNPs_32366 0 0 1 0 1 NUCB2 chr11:17317014 5'GT 17317014 Upstream 23bp
chr10 134980985 134980985 1 + G C SARC 134980995 + 134980975 134981015 41 TCCATGCGGAGCGTGGCCCACGCCGCCATCTTCCAGAGCCT TCCATGCGGACCGTGGCCCACGCCGCCATCTTCCAGAGCCT < 41bp 1 0.42166292769195 1 0.201328247785568 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KNDC1 ENSG00000171798 CDS Human protein_coding chr10:134980995 chr10:134980985 nonsynonymous SNV 0.060 4 11 hm5C_associated_SNPs_32368 0 0 1 0 1 KNDC1 chr10:134981083 5'GT 134981083 Upstream 99bp
chr4 123145709 123145709 1 + C G SARC 123145724 + 123145704 123145744 41 GGTCTCCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG GGTCTGCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG < 41bp 1 0.4584980398072 1 0.32269212603569 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123145724 chr4:123145709 synonymous SNV . 0 6 hm5C_associated_SNPs_32370 0 0 1 0 2 KIAA1109 chr4:123145653 3'AG 123145653 Downstream 57bp
chr4 123145709 123145709 1 + C G SARC 123145724 + 123145704 123145744 41 GGTCTCCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG GGTCTGCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG < 41bp 1 0.4584980398072 1 0.32269212603569 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123145724 chr4:123145709 synonymous SNV . 0 6 hm5C_associated_SNPs_32370 0 0 1 0 2 KIAA1109 chr4:123145656 3'AG 123145656 Downstream 54bp
chr1 198231724 198231724 1 + C T SARC 198231736 + 198231716 198231756 41 AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG AATGGATGTCAAAGCACGTGCTGATTGCATCAAAGAAATAG < 41bp 1 0.178764374493338 1 0.0911081731319427 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231736 chr1:198231724 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_32371 0 0 0 0 2 NEK7 chr1:198231705 3'AG 198231705 Downstream 20bp
chr1 198231724 198231724 1 + C T SARC 198231736 + 198231716 198231756 41 AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG AATGGATGTCAAAGCACGTGCTGATTGCATCAAAGAAATAG < 41bp 1 0.178764374493338 1 0.0911081731319427 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231736 chr1:198231724 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_32371 0 0 0 0 2 NEK7 chr1:198231767 5'GT 198231767 Upstream 44bp
chr4 154245295 154245295 1 + G T SARC 154245282 + 154245262 154245302 41 GAGATTATTATTACAGATTTCCATAATCATTCTGTCAAGGT GAGATTATTATTACAGATTTCCATAATCATTCTTTCAAGGT < 41bp 1 0.092104091574292 1 0.0787844657897949 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154245282 chr4:154245295 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_32372 0 0 1 0 2 TRIM2 chr4:154245230 3'AG 154245230 Downstream 66bp
chr4 154245295 154245295 1 + G T SARC 154245282 + 154245262 154245302 41 GAGATTATTATTACAGATTTCCATAATCATTCTGTCAAGGT GAGATTATTATTACAGATTTCCATAATCATTCTTTCAAGGT < 41bp 1 0.092104091574292 1 0.0787844657897949 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154245282 chr4:154245295 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_32372 0 0 1 0 2 TRIM2 chr4:154245300 5'GT 154245300 Upstream 6bp
chr6 33646250 33646250 1 + A G SARC 33646267 + 33646247 33646287 41 AGAAGTTCTGTGCAGGGAACCCCGGCAACCAGGCCCTGCTG AGAGGTTCTGTGCAGGGAACCCCGGCAACCAGGCCCTGCTG < 41bp 1 0.32761963014002 1 0.238783836364746 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33646267 chr6:33646250 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_32373 0 0 0 0 1 ITPR3 chr6:33646320 5'GT 33646320 Upstream 71bp
chr5 179153701 179153701 1 + G A SARC 179153689 + 179153669 179153709 41 CTTCTGTCTTAGAAGAGAAACAGAAAAGTGATGCTGAAGAA CTTCTGTCTTAGAAGAGAAACAGAAAAGTGATACTGAAGAA < 41bp 1 0.654264824157426 1 0.40679132938385 experiment 0.691470351685148 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179153689 chr5:179153701 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_32374 0 0 1 0 2 CANX chr5:179153681 3'AG 179153681 Downstream 21bp
chr5 179153701 179153701 1 + G A SARC 179153689 + 179153669 179153709 41 CTTCTGTCTTAGAAGAGAAACAGAAAAGTGATGCTGAAGAA CTTCTGTCTTAGAAGAGAAACAGAAAAGTGATACTGAAGAA < 41bp 1 0.654264824157426 1 0.40679132938385 experiment 0.691470351685148 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179153689 chr5:179153701 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_32374 0 0 1 0 2 CANX chr5:179153760 5'GT 179153760 Upstream 60bp
chr5 179153701 179153701 1 + G A SARC 179153702 + 179153682 179153722 41 AGAGAAACAGAAAAGTGATGCTGAAGAAGATGGTGGCACTG AGAGAAACAGAAAAGTGATACTGAAGAAGATGGTGGCACTG < 41bp 1 0.743178032341062 1 0.384885460138321 experiment 0.513643935317876 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179153702 chr5:179153701 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_32375 0 0 1 0 2 CANX chr5:179153681 3'AG 179153681 Downstream 21bp
chr5 179153701 179153701 1 + G A SARC 179153702 + 179153682 179153722 41 AGAGAAACAGAAAAGTGATGCTGAAGAAGATGGTGGCACTG AGAGAAACAGAAAAGTGATACTGAAGAAGATGGTGGCACTG < 41bp 1 0.743178032341062 1 0.384885460138321 experiment 0.513643935317876 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179153702 chr5:179153701 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_32375 0 0 1 0 2 CANX chr5:179153760 5'GT 179153760 Upstream 60bp
chr5 179153701 179153701 1 + G A SARC 179153718 + 179153698 179153738 41 GATGCTGAAGAAGATGGTGGCACTGTCAGTCAAGAGGAGGA GATACTGAAGAAGATGGTGGCACTGTCAGTCAAGAGGAGGA < 41bp 1 0.287710361013172 1 0.0860960185527802 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179153718 chr5:179153701 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_32376 0 0 1 0 2 CANX chr5:179153681 3'AG 179153681 Downstream 21bp
chr5 179153701 179153701 1 + G A SARC 179153718 + 179153698 179153738 41 GATGCTGAAGAAGATGGTGGCACTGTCAGTCAAGAGGAGGA GATACTGAAGAAGATGGTGGCACTGTCAGTCAAGAGGAGGA < 41bp 1 0.287710361013172 1 0.0860960185527802 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179153718 chr5:179153701 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_32376 0 0 1 0 2 CANX chr5:179153760 5'GT 179153760 Upstream 60bp
chr5 179153701 179153701 1 + G A SARC 179153720 + 179153700 179153740 41 TGCTGAAGAAGATGGTGGCACTGTCAGTCAAGAGGAGGAAG TACTGAAGAAGATGGTGGCACTGTCAGTCAAGAGGAGGAAG < 41bp 1 0.166292398721756 1 0.127440214157104 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179153720 chr5:179153701 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_32377 0 0 1 0 2 CANX chr5:179153681 3'AG 179153681 Downstream 21bp
chr5 179153701 179153701 1 + G A SARC 179153720 + 179153700 179153740 41 TGCTGAAGAAGATGGTGGCACTGTCAGTCAAGAGGAGGAAG TACTGAAGAAGATGGTGGCACTGTCAGTCAAGAGGAGGAAG < 41bp 1 0.166292398721756 1 0.127440214157104 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179153720 chr5:179153701 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_32377 0 0 1 0 2 CANX chr5:179153760 5'GT 179153760 Upstream 60bp
chr14 75190037 75190037 1 + G T SARC 75190025 + 75190005 75190045 41 CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTCTA CTGAAATTGAGAAATTGGGGCAGAAGTATCGATTGGCTCTA < 41bp 1 0.749681206231147 1 0.206355422735214 experiment 0.500637587537705 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCF1 ENSG00000119616 CDS Human protein_coding chr14:75190025 chr14:75190037 nonsynonymous SNV 0.998 1 33 hm5C_associated_SNPs_32378 0 0 1 1 2 FCF1 chr14:75189975 3'AG 75189975 Downstream 63bp
chr14 75190037 75190037 1 + G T SARC 75190025 + 75190005 75190045 41 CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTCTA CTGAAATTGAGAAATTGGGGCAGAAGTATCGATTGGCTCTA < 41bp 1 0.749681206231147 1 0.206355422735214 experiment 0.500637587537705 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCF1 ENSG00000119616 CDS Human protein_coding chr14:75190025 chr14:75190037 nonsynonymous SNV 0.998 1 33 hm5C_associated_SNPs_32378 0 0 1 1 2 FCF1 chr14:75190047 5'GT 75190047 Upstream 11bp
chr7 94917931 94917931 1 + C T SARC 94917917 + 94917897 94917937 41 CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCATTGGTTA < 41bp 1 0.564166172911836 1 0.133418262004852 experiment 0.871667654176329 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917917 chr7:94917931 synonymous SNV . 0 35 hm5C_associated_SNPs_32379 0 0 0 0 2 PPP1R9A chr7:94917848 3'AG 94917848 Downstream 84bp
chr7 94917931 94917931 1 + C T SARC 94917917 + 94917897 94917937 41 CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCATTGGTTA < 41bp 1 0.564166172911836 1 0.133418262004852 experiment 0.871667654176329 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917917 chr7:94917931 synonymous SNV . 0 35 hm5C_associated_SNPs_32379 0 0 0 0 2 PPP1R9A chr7:94918030 5'GT 94918030 Upstream 100bp
chr6 110059609 110059609 1 + A G SARC 110059608 + 110059588 110059628 41 ATATAATTAAAAGTACTGTGCATCGTGACTGGCTTTTGTAT ATATAATTAAAAGTACTGTGCGTCGTGACTGGCTTTTGTAT < 41bp 1 0.111390076914917 1 0.0592632293701172 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FIG4 ENSG00000112367 CDS Human protein_coding chr6:110059608 chr6:110059609 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_32383 0 0 1 0 2 FIG4 chr6:110059528 3'AG 110059528 Downstream 82bp
chr6 110059609 110059609 1 + A G SARC 110059608 + 110059588 110059628 41 ATATAATTAAAAGTACTGTGCATCGTGACTGGCTTTTGTAT ATATAATTAAAAGTACTGTGCGTCGTGACTGGCTTTTGTAT < 41bp 1 0.111390076914917 1 0.0592632293701172 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FIG4 ENSG00000112367 CDS Human protein_coding chr6:110059608 chr6:110059609 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_32383 0 0 1 0 2 FIG4 chr6:110059656 5'GT 110059656 Upstream 48bp
chr6 31604863 31604863 1 + G T SARC 31604866 + 31604846 31604886 41 CAGGATTATCAAAAACTGAGCAGCAACCTTGGGGGACCTGG CAGGATTATCAAAAACTTAGCAGCAACCTTGGGGGACCTGG < 41bp 1 0.599757639694147 1 0.542932331562042 experiment 0.800484720611706 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31604866 chr6:31604863 synonymous SNV . 0 18 hm5C_associated_SNPs_32384 0 0 1 0 2 PRRC2A chr6:31604819 3'AG 31604819 Downstream 45bp
chr6 31604863 31604863 1 + G T SARC 31604866 + 31604846 31604886 41 CAGGATTATCAAAAACTGAGCAGCAACCTTGGGGGACCTGG CAGGATTATCAAAAACTTAGCAGCAACCTTGGGGGACCTGG < 41bp 1 0.599757639694147 1 0.542932331562042 experiment 0.800484720611706 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31604866 chr6:31604863 synonymous SNV . 0 18 hm5C_associated_SNPs_32384 0 0 1 0 2 PRRC2A chr6:31604913 5'GT 31604913 Upstream 51bp
chr6 31604868 31604868 1 + G T SARC 31604866 + 31604846 31604886 41 CAGGATTATCAAAAACTGAGCAGCAACCTTGGGGGACCTGG CAGGATTATCAAAAACTGAGCATCAACCTTGGGGGACCTGG < 41bp 1 0.371962868558697 1 0.0708874762058258 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31604866 chr6:31604868 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_32385 0 0 1 0 2 PRRC2A chr6:31604819 3'AG 31604819 Downstream 50bp
chr6 31604868 31604868 1 + G T SARC 31604866 + 31604846 31604886 41 CAGGATTATCAAAAACTGAGCAGCAACCTTGGGGGACCTGG CAGGATTATCAAAAACTGAGCATCAACCTTGGGGGACCTGG < 41bp 1 0.371962868558697 1 0.0708874762058258 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31604866 chr6:31604868 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_32385 0 0 1 0 2 PRRC2A chr6:31604913 5'GT 31604913 Upstream 46bp
chr1 180012301 180012301 1 + G T SARC 180012302 + 180012282 180012322 41 TTCCAGACTTTGTGAAACAGCTGAGGACCAGAACTGAAACA TTCCAGACTTTGTGAAACATCTGAGGACCAGAACTGAAACA < 41bp 1 0.540150417851991 1 0.316316545009613 experiment 0.919699164296017 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180012302 chr1:180012301 nonsynonymous SNV 0.638 0 20 hm5C_associated_SNPs_32387 0 0 1 0 1 CEP350 chr1:180012327 5'GT 180012327 Upstream 27bp
chr1 43124106 43124106 1 + C T SARC 43124111 + 43124091 43124131 41 CCCGACTTCTGCTTCCGGGTCGGAGCCATGGCGGTGGCAAA CCCGACTTCTGCTTCTGGGTCGGAGCCATGGCGGTGGCAAA < 41bp 1 0.611867444074903 1 0.734655797481537 experiment 0.776265111850194 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PPIH ENSG00000171960 UTR5 Human protein_coding chr1:43124111 chr1:43124106 . . 0 16 hm5C_associated_SNPs_32388 0 0 1 0 1 PPIH chr1:43124183 5'GT 43124183 Upstream 78bp
chr1 183519982 183519982 1 + C T SARC 183519963 + 183519943 183519983 41 GCTCTCCTCCAACACACAACCATAATTCTGTTCCATTCTCC GCTCTCCTCCAACACACAACCATAATTCTGTTCCATTCTTC < 41bp 1 0.396161009381669 1 0.121208101511002 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMG7 ENSG00000116698 CDS Human protein_coding chr1:183519963 chr1:183519982 nonsynonymous SNV 0.999 4 40 hm5C_associated_SNPs_32389 0 0 1 0 2 SMG7 chr1:183519886 3'AG 183519886 Downstream 97bp
chr1 183519982 183519982 1 + C T SARC 183519963 + 183519943 183519983 41 GCTCTCCTCCAACACACAACCATAATTCTGTTCCATTCTCC GCTCTCCTCCAACACACAACCATAATTCTGTTCCATTCTTC < 41bp 1 0.396161009381669 1 0.121208101511002 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMG7 ENSG00000116698 CDS Human protein_coding chr1:183519963 chr1:183519982 nonsynonymous SNV 0.999 4 40 hm5C_associated_SNPs_32389 0 0 1 0 2 SMG7 chr1:183520056 5'GT 183520056 Upstream 75bp
chr1 183519983 183519983 1 + C T SARC 183519963 + 183519943 183519983 41 GCTCTCCTCCAACACACAACCATAATTCTGTTCCATTCTCC GCTCTCCTCCAACACACAACCATAATTCTGTTCCATTCTCT < 41bp 1 0.330988515296942 1 0.112538367509842 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMG7 ENSG00000116698 CDS Human protein_coding chr1:183519963 chr1:183519983 synonymous SNV . 0 41 hm5C_associated_SNPs_32390 0 0 1 0 2 SMG7 chr1:183519886 3'AG 183519886 Downstream 98bp
chr1 183519983 183519983 1 + C T SARC 183519963 + 183519943 183519983 41 GCTCTCCTCCAACACACAACCATAATTCTGTTCCATTCTCC GCTCTCCTCCAACACACAACCATAATTCTGTTCCATTCTCT < 41bp 1 0.330988515296942 1 0.112538367509842 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMG7 ENSG00000116698 CDS Human protein_coding chr1:183519963 chr1:183519983 synonymous SNV . 0 41 hm5C_associated_SNPs_32390 0 0 1 0 2 SMG7 chr1:183520056 5'GT 183520056 Upstream 74bp
chr2 234358759 234358759 1 + G A SARC 234358771 + 234358751 234358791 41 TCCCCAAGGGGAGGAGCCAGCGCAAAGGTACTTGTGCCTCC TCCCCAAGAGGAGGAGCCAGCGCAAAGGTACTTGTGCCTCC < 41bp 1 0.793387726589212 1 0.913113117218018 experiment 0.413224546821577 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DGKD ENSG00000077044 CDS Human protein_coding chr2:234358771 chr2:234358759 nonsynonymous SNV 0.794 0 9 hm5C_associated_SNPs_32391 0 0 1 0 1 DGKD chr2:234358777 5'GT 234358777 Upstream 19bp
chr5 176863465 176863465 1 + C T SARC 176863468 + 176863448 176863488 41 GAGGTGAAGGAGCACCCCCTCTTTAAGAAGCTGAACTTCAA GAGGTGAAGGAGCACCCTCTCTTTAAGAAGCTGAACTTCAA < 41bp 1 0.430238297784646 1 0.199055045843124 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRK6 ENSG00000198055 CDS Human protein_coding chr5:176863468 chr5:176863465 synonymous SNV . 0 18 hm5C_associated_SNPs_32392 0 0 1 0 2 GRK6 chr5:176863394 3'AG 176863394 Downstream 72bp
chr5 176863465 176863465 1 + C T SARC 176863468 + 176863448 176863488 41 GAGGTGAAGGAGCACCCCCTCTTTAAGAAGCTGAACTTCAA GAGGTGAAGGAGCACCCTCTCTTTAAGAAGCTGAACTTCAA < 41bp 1 0.430238297784646 1 0.199055045843124 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRK6 ENSG00000198055 CDS Human protein_coding chr5:176863468 chr5:176863465 synonymous SNV . 0 18 hm5C_associated_SNPs_32392 0 0 1 0 2 GRK6 chr5:176863531 5'GT 176863531 Upstream 67bp
chr9 139975207 139975207 1 + C T SARC 139975202 + 139975182 139975222 41 CCCCACTGAAGAACGCAGAGCCAGCCGACAGGGACAGTCCC CCCCACTGAAGAACGCAGAGCCAGCTGACAGGGACAGTCCC < 41bp 1 0.103963554291515 1 0.493384420871735 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139975202 chr9:139975207 synonymous SNV . 0 26 hm5C_associated_SNPs_32393 0 0 1 0 1 UAP1L1 chr9:139975141 3'AG 139975141 Downstream 67bp
chr9 139975207 139975207 1 + C T SARC 139975203 + 139975183 139975223 41 CCCACTGAAGAACGCAGAGCCAGCCGACAGGGACAGTCCCC CCCACTGAAGAACGCAGAGCCAGCTGACAGGGACAGTCCCC < 41bp 1 0.473951677597017 1 0.476031720638275 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139975203 chr9:139975207 synonymous SNV . 0 25 hm5C_associated_SNPs_32394 0 0 1 0 1 UAP1L1 chr9:139975141 3'AG 139975141 Downstream 67bp
chr10 102824587 102824587 1 + G A SARC 102824602 + 102824582 102824622 41 GACCAGCTGAACTCTACAGGCATCCCCCAGCTGCGATCACT GACCAACTGAACTCTACAGGCATCCCCCAGCTGCGATCACT < 41bp 1 0.0334004461360336 1 0.0526277124881744 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824602 chr10:102824587 synonymous SNV . 0 6 hm5C_associated_SNPs_32395 0 0 0 0 1 KAZALD1 chr10:102824583 3'AG 102824583 Downstream 5bp
chr19 2850662 2850662 1 + C T SARC 2850663 + 2850643 2850683 41 TGGATTCTGCTCAGAGGGACCTCTACAGAGATGTGATGCTG TGGATTCTGCTCAGAGGGATCTCTACAGAGATGTGATGCTG < 41bp 1 0.615961940194683 1 0.917482137680054 experiment 0.768076119610635 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF555 ENSG00000186300 CDS Human protein_coding chr19:2850663 chr19:2850662 synonymous SNV . 0 20 hm5C_associated_SNPs_32398 0 0 0 0 2 ZNF555 chr19:2850585 3'AG 2850585 Downstream 78bp
chr19 2850662 2850662 1 + C T SARC 2850663 + 2850643 2850683 41 TGGATTCTGCTCAGAGGGACCTCTACAGAGATGTGATGCTG TGGATTCTGCTCAGAGGGATCTCTACAGAGATGTGATGCTG < 41bp 1 0.615961940194683 1 0.917482137680054 experiment 0.768076119610635 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF555 ENSG00000186300 CDS Human protein_coding chr19:2850663 chr19:2850662 synonymous SNV . 0 20 hm5C_associated_SNPs_32398 0 0 0 0 2 ZNF555 chr19:2850711 5'GT 2850711 Upstream 50bp
chr19 50031746 50031746 1 + C T SARC 50031728 + 50031708 50031748 41 CTTTGCCACTCCCCAGGGACCGATGATGTGGCGACCATCAG CTTTGCCACTCCCCAGGGACCGATGATGTGGCGACCATTAG < 41bp 1 0.540726425258485 1 0.41703662276268 experiment 0.918547149483031 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RCN3 ENSG00000142552 CDS Human protein_coding chr19:50031728 chr19:50031746 nonsynonymous SNV 0.018 0 39 hm5C_associated_SNPs_32399 0 0 1 0 1 RCN3 chr19:50031724 3'AG 50031724 Downstream 23bp
chr6 44221273 44221273 1 + C G SARC 44221288 + 44221268 44221308 41 CAGTTCCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGAT CAGTTGCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGAT < 41bp 1 0.0518695458705699 1 0.0410882830619812 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44221288 chr6:44221273 nonsynonymous SNV 1.000 0 6 hm5C_associated_SNPs_32400 0 0 1 0 1 HSP90AB1 chr6:44221226 3'AG 44221226 Downstream 48bp
chr6 44221273 44221273 1 + C G SARC 44221289 + 44221269 44221309 41 AGTTCCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGATG AGTTGCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGATG < 41bp 1 0.304219762861038 1 0.188214391469955 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44221289 chr6:44221273 nonsynonymous SNV 1.000 0 5 hm5C_associated_SNPs_32401 0 0 1 0 1 HSP90AB1 chr6:44221226 3'AG 44221226 Downstream 48bp
chrX 37955474 37955474 1 + G T SARC 37955484 + 37955464 37955504 41 TCTGTCCCTGGGGCTTTAGACAAGGTAAGTTGGATGTGGAA TCTGTCCCTGTGGCTTTAGACAAGGTAAGTTGGATGTGGAA < 41bp 1 0.710251067830998 1 0.699925184249878 experiment 0.579497864338005 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37955484 chrX:37955474 nonsynonymous SNV 0.993 3 11 hm5C_associated_SNPs_32402 0 0 0 0 2 SYTL5 chrX:37955387 3'AG 37955387 Downstream 88bp
chrX 37955474 37955474 1 + G T SARC 37955484 + 37955464 37955504 41 TCTGTCCCTGGGGCTTTAGACAAGGTAAGTTGGATGTGGAA TCTGTCCCTGTGGCTTTAGACAAGGTAAGTTGGATGTGGAA < 41bp 1 0.710251067830998 1 0.699925184249878 experiment 0.579497864338005 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37955484 chrX:37955474 nonsynonymous SNV 0.993 3 11 hm5C_associated_SNPs_32402 0 0 0 0 2 SYTL5 chrX:37955487 5'GT 37955487 Upstream 14bp
chr14 102800911 102800911 1 + G C SARC 102800918 + 102800898 102800938 41 AGCAGTGTGACCGGGAGGATCTGGTGGAATTGGCTCTGCCT AGCAGTGTGACCGCGAGGATCTGGTGGAATTGGCTCTGCCT < 41bp 1 0.752380298792373 1 0.812606811523438 experiment 0.495239402415255 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102800918 chr14:102800911 synonymous SNV . 0 14 hm5C_associated_SNPs_32405 0 0 1 0 2 ZNF839 chr14:102800891 3'AG 102800891 Downstream 21bp
chr14 102800911 102800911 1 + G C SARC 102800918 + 102800898 102800938 41 AGCAGTGTGACCGGGAGGATCTGGTGGAATTGGCTCTGCCT AGCAGTGTGACCGCGAGGATCTGGTGGAATTGGCTCTGCCT < 41bp 1 0.752380298792373 1 0.812606811523438 experiment 0.495239402415255 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102800918 chr14:102800911 synonymous SNV . 0 14 hm5C_associated_SNPs_32405 0 0 1 0 2 ZNF839 chr14:102800983 5'GT 102800983 Upstream 73bp
chr11 130003584 130003584 1 + A C SARC 130003575 + 130003555 130003595 41 GGAGGAACCAAAGCCTCTCTCTGCTCTACAAAGTACCTTAT GGAGGAACCAAAGCCTCTCTCTGCTCTACCAAGTACCTTAT < 41bp 1 0.50947729353768 1 0.513987064361572 experiment 0.98104541292464 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130003575 chr11:130003584 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_32406 0 0 1 0 2 APLP2 chr11:130003524 3'AG 130003524 Downstream 61bp
chr11 130003584 130003584 1 + A C SARC 130003575 + 130003555 130003595 41 GGAGGAACCAAAGCCTCTCTCTGCTCTACAAAGTACCTTAT GGAGGAACCAAAGCCTCTCTCTGCTCTACCAAGTACCTTAT < 41bp 1 0.50947729353768 1 0.513987064361572 experiment 0.98104541292464 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130003575 chr11:130003584 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_32406 0 0 1 0 2 APLP2 chr11:130003623 5'GT 130003623 Upstream 40bp
chr17 26685947 26685947 1 + C G SARC 26685943 + 26685923 26685963 41 AACCTTTTCTTCTCAGATTCCAAACTATACCTCCATGAGCT AACCTTTTCTTCTCAGATTCCAAAGTATACCTCCATGAGCT < 41bp 1 0.325910107829207 1 0.451225787401199 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM199 ENSG00000244045 CDS Human protein_coding chr17:26685943 chr17:26685947 nonsynonymous SNV 0.973 0 25 hm5C_associated_SNPs_32407 0 0 1 0 2 TMEM199 chr17:26685939 3'AG 26685939 Downstream 9bp
chr17 26685947 26685947 1 + C G SARC 26685943 + 26685923 26685963 41 AACCTTTTCTTCTCAGATTCCAAACTATACCTCCATGAGCT AACCTTTTCTTCTCAGATTCCAAAGTATACCTCCATGAGCT < 41bp 1 0.325910107829207 1 0.451225787401199 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM199 ENSG00000244045 CDS Human protein_coding chr17:26685943 chr17:26685947 nonsynonymous SNV 0.973 0 25 hm5C_associated_SNPs_32407 0 0 1 0 2 TMEM199 chr17:26686012 5'GT 26686012 Upstream 66bp
chr5 118861660 118861660 1 + C T SARC 118861674 + 118861654 118861694 41 TTTCTGCCAGGCGTGTGTTACAGCAGTTTGCAGATAATGAT TTTCTGTCAGGCGTGTGTTACAGCAGTTTGCAGATAATGAT < 41bp 1 0.75196631744724 1 0.114778578281403 experiment 0.49606736510552 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118861674 chr5:118861660 nonsynonymous SNV 0.999 2 7 hm5C_associated_SNPs_32408 0 0 1 0 2 HSD17B4 chr5:118861612 3'AG 118861612 Downstream 49bp
chr5 118861660 118861660 1 + C T SARC 118861674 + 118861654 118861694 41 TTTCTGCCAGGCGTGTGTTACAGCAGTTTGCAGATAATGAT TTTCTGTCAGGCGTGTGTTACAGCAGTTTGCAGATAATGAT < 41bp 1 0.75196631744724 1 0.114778578281403 experiment 0.49606736510552 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118861674 chr5:118861660 nonsynonymous SNV 0.999 2 7 hm5C_associated_SNPs_32408 0 0 1 0 2 HSD17B4 chr5:118861718 5'GT 118861718 Upstream 59bp
chr9 131847005 131847005 1 + C T SARC 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTCAGCCCTGTATTTGTCATCGTTGGTTTCGTGACCCT < 41bp 1 0.591501310148412 1 0.330249965190887 experiment 0.816997379703176 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131847005 synonymous SNV . 0 27 hm5C_associated_SNPs_32409 0 0 1 0 2 DOLPP1 chr9:131846947 3'AG 131846947 Downstream 59bp
chr9 131847005 131847005 1 + C T SARC 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTCAGCCCTGTATTTGTCATCGTTGGTTTCGTGACCCT < 41bp 1 0.591501310148412 1 0.330249965190887 experiment 0.816997379703176 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131847005 synonymous SNV . 0 27 hm5C_associated_SNPs_32409 0 0 1 0 2 DOLPP1 chr9:131847047 5'GT 131847047 Upstream 43bp
chr9 129974455 129974455 1 + G T SARC 129974474 + 129974454 129974494 41 TGCCCACCATGGAGGGGCCTCTGAGAAGAAAAACCCTGCTC TTCCCACCATGGAGGGGCCTCTGAGAAGAAAAACCCTGCTC < 41bp 1 0.596368275990078 1 0.365530908107758 experiment 0.807263448019844 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RALGPS1 ENSG00000136828 CDS Human protein_coding chr9:129974474 chr9:129974455 synonymous SNV . 0 2 hm5C_associated_SNPs_32410 0 0 1 0 2 RALGPS1 chr9:129974410 3'AG 129974410 Downstream 46bp
chr9 129974455 129974455 1 + G T SARC 129974474 + 129974454 129974494 41 TGCCCACCATGGAGGGGCCTCTGAGAAGAAAAACCCTGCTC TTCCCACCATGGAGGGGCCTCTGAGAAGAAAAACCCTGCTC < 41bp 1 0.596368275990078 1 0.365530908107758 experiment 0.807263448019844 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RALGPS1 ENSG00000136828 CDS Human protein_coding chr9:129974474 chr9:129974455 synonymous SNV . 0 2 hm5C_associated_SNPs_32410 0 0 1 0 2 RALGPS1 chr9:129974515 5'GT 129974515 Upstream 61bp
chrX 9661245 9661245 1 + G T SARC 9661244 + 9661224 9661264 41 CGGTTTTGCAAGAATATGGACGGAAGATGGTGAGTTCTGTG CGGTTTTGCAAGAATATGGACTGAAGATGGTGAGTTCTGTG < 41bp 1 0.42090067557964 1 0.0954459011554718 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBL1X ENSG00000101849 CDS Human protein_coding chrX:9661244 chrX:9661245 synonymous SNV . 0 22 hm5C_associated_SNPs_32411 0 0 0 0 2 TBL1X chrX:9661189 3'AG 9661189 Downstream 57bp
chrX 9661245 9661245 1 + G T SARC 9661244 + 9661224 9661264 41 CGGTTTTGCAAGAATATGGACGGAAGATGGTGAGTTCTGTG CGGTTTTGCAAGAATATGGACTGAAGATGGTGAGTTCTGTG < 41bp 1 0.42090067557964 1 0.0954459011554718 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBL1X ENSG00000101849 CDS Human protein_coding chrX:9661244 chrX:9661245 synonymous SNV . 0 22 hm5C_associated_SNPs_32411 0 0 0 0 2 TBL1X chrX:9661252 5'GT 9661252 Upstream 8bp
chr3 4856236 4856236 1 + C A SARC 4856235 + 4856215 4856255 41 TAGGAGATGTACTCAGGAAGCCGTCCAAAGAGGTAAATTAA TAGGAGATGTACTCAGGAAGCAGTCCAAAGAGGTAAATTAA < 41bp 1 0.0965884590403437 1 0.628832995891571 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4856235 chr3:4856236 nonsynonymous SNV 0.974 5 22 hm5C_associated_SNPs_32412 0 0 1 0 1 ITPR1 chr3:4856246 5'GT 4856246 Upstream 11bp
chr1 113238120 113238120 1 + G A SARC 113238138 + 113238118 113238158 41 CCGGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGCCC CCAGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGCCC < 41bp 1 0.0510049744243883 1 0.0426943004131317 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113238138 chr1:113238120 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_32413 0 0 1 0 2 MOV10 chr1:113238038 3'AG 113238038 Downstream 83bp
chr1 113238120 113238120 1 + G A SARC 113238138 + 113238118 113238158 41 CCGGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGCCC CCAGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGCCC < 41bp 1 0.0510049744243883 1 0.0426943004131317 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113238138 chr1:113238120 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_32413 0 0 1 0 2 MOV10 chr1:113238196 5'GT 113238196 Upstream 77bp
chr9 72659550 72659550 1 + G A SARC 72659530 + 72659510 72659550 41 CGCCGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTTG CGCCGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTTA < 41bp 1 0.478238995102751 1 0.161248415708542 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659530 chr9:72659550 nonsynonymous SNV 0.998 4 41 hm5C_associated_SNPs_32414 0 0 0 0 2 MAMDC2 chr9:72659500 3'AG 72659500 Downstream 51bp
chr9 72659550 72659550 1 + G A SARC 72659530 + 72659510 72659550 41 CGCCGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTTG CGCCGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTTA < 41bp 1 0.478238995102751 1 0.161248415708542 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659530 chr9:72659550 nonsynonymous SNV 0.998 4 41 hm5C_associated_SNPs_32414 0 0 0 0 2 MAMDC2 chr9:72659613 5'GT 72659613 Upstream 64bp
chr9 72659550 72659550 1 + G A SARC 72659531 + 72659511 72659551 41 GCCGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTTGA GCCGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTTAA < 41bp 1 0.669033918268593 1 0.596844732761383 experiment 0.661932163462813 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659531 chr9:72659550 nonsynonymous SNV 0.998 4 40 hm5C_associated_SNPs_32415 0 0 0 0 2 MAMDC2 chr9:72659500 3'AG 72659500 Downstream 51bp
chr9 72659550 72659550 1 + G A SARC 72659531 + 72659511 72659551 41 GCCGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTTGA GCCGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTTAA < 41bp 1 0.669033918268593 1 0.596844732761383 experiment 0.661932163462813 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659531 chr9:72659550 nonsynonymous SNV 0.998 4 40 hm5C_associated_SNPs_32415 0 0 0 0 2 MAMDC2 chr9:72659613 5'GT 72659613 Upstream 64bp
chr9 72659550 72659550 1 + G A SARC 72659533 + 72659513 72659553 41 CGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTTGAAG CGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTTAAAG < 41bp 1 0.765307857242061 1 0.45237147808075 experiment 0.469384285515877 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659533 chr9:72659550 nonsynonymous SNV 0.998 4 38 hm5C_associated_SNPs_32416 0 0 0 0 2 MAMDC2 chr9:72659500 3'AG 72659500 Downstream 51bp
chr9 72659550 72659550 1 + G A SARC 72659533 + 72659513 72659553 41 CGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTTGAAG CGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTTAAAG < 41bp 1 0.765307857242061 1 0.45237147808075 experiment 0.469384285515877 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659533 chr9:72659550 nonsynonymous SNV 0.998 4 38 hm5C_associated_SNPs_32416 0 0 0 0 2 MAMDC2 chr9:72659613 5'GT 72659613 Upstream 64bp
chr9 72659550 72659550 1 + G A SARC 72659539 + 72659519 72659559 41 CCTCGACCTGCCCGCTGGGTCCTGTGCCTTTGAAGAGAGCA CCTCGACCTGCCCGCTGGGTCCTGTGCCTTTAAAGAGAGCA < 41bp 1 0.24801651565282 1 0.251961708068848 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659539 chr9:72659550 nonsynonymous SNV 0.998 4 32 hm5C_associated_SNPs_32417 0 0 0 0 2 MAMDC2 chr9:72659500 3'AG 72659500 Downstream 51bp
chr9 72659550 72659550 1 + G A SARC 72659539 + 72659519 72659559 41 CCTCGACCTGCCCGCTGGGTCCTGTGCCTTTGAAGAGAGCA CCTCGACCTGCCCGCTGGGTCCTGTGCCTTTAAAGAGAGCA < 41bp 1 0.24801651565282 1 0.251961708068848 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659539 chr9:72659550 nonsynonymous SNV 0.998 4 32 hm5C_associated_SNPs_32417 0 0 0 0 2 MAMDC2 chr9:72659613 5'GT 72659613 Upstream 64bp
chr9 72659550 72659550 1 + G A SARC 72659545 + 72659525 72659565 41 CCTGCCCGCTGGGTCCTGTGCCTTTGAAGAGAGCACTTGCG CCTGCCCGCTGGGTCCTGTGCCTTTAAAGAGAGCACTTGCG < 41bp 1 0.0699537752468035 1 0.0241696536540985 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659545 chr9:72659550 nonsynonymous SNV 0.998 4 26 hm5C_associated_SNPs_32418 0 0 0 0 2 MAMDC2 chr9:72659500 3'AG 72659500 Downstream 51bp
chr9 72659550 72659550 1 + G A SARC 72659545 + 72659525 72659565 41 CCTGCCCGCTGGGTCCTGTGCCTTTGAAGAGAGCACTTGCG CCTGCCCGCTGGGTCCTGTGCCTTTAAAGAGAGCACTTGCG < 41bp 1 0.0699537752468035 1 0.0241696536540985 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659545 chr9:72659550 nonsynonymous SNV 0.998 4 26 hm5C_associated_SNPs_32418 0 0 0 0 2 MAMDC2 chr9:72659613 5'GT 72659613 Upstream 64bp
chr9 72659550 72659550 1 + G A SARC 72659558 + 72659538 72659578 41 TCCTGTGCCTTTGAAGAGAGCACTTGCGGCTTTGACTCCGT TCCTGTGCCTTTAAAGAGAGCACTTGCGGCTTTGACTCCGT < 41bp 1 0.327663606858432 1 0.0257466435432434 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659558 chr9:72659550 nonsynonymous SNV 0.998 4 13 hm5C_associated_SNPs_32419 0 0 0 0 2 MAMDC2 chr9:72659500 3'AG 72659500 Downstream 51bp
chr9 72659550 72659550 1 + G A SARC 72659558 + 72659538 72659578 41 TCCTGTGCCTTTGAAGAGAGCACTTGCGGCTTTGACTCCGT TCCTGTGCCTTTAAAGAGAGCACTTGCGGCTTTGACTCCGT < 41bp 1 0.327663606858432 1 0.0257466435432434 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659558 chr9:72659550 nonsynonymous SNV 0.998 4 13 hm5C_associated_SNPs_32419 0 0 0 0 2 MAMDC2 chr9:72659613 5'GT 72659613 Upstream 64bp
chr9 72659550 72659550 1 + G A SARC 72659560 + 72659540 72659580 41 CTGTGCCTTTGAAGAGAGCACTTGCGGCTTTGACTCCGTGT CTGTGCCTTTAAAGAGAGCACTTGCGGCTTTGACTCCGTGT < 41bp 1 0.37053646116934 1 0.0295674502849579 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659560 chr9:72659550 nonsynonymous SNV 0.998 4 11 hm5C_associated_SNPs_32420 0 0 0 0 2 MAMDC2 chr9:72659500 3'AG 72659500 Downstream 51bp
chr9 72659550 72659550 1 + G A SARC 72659560 + 72659540 72659580 41 CTGTGCCTTTGAAGAGAGCACTTGCGGCTTTGACTCCGTGT CTGTGCCTTTAAAGAGAGCACTTGCGGCTTTGACTCCGTGT < 41bp 1 0.37053646116934 1 0.0295674502849579 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659560 chr9:72659550 nonsynonymous SNV 0.998 4 11 hm5C_associated_SNPs_32420 0 0 0 0 2 MAMDC2 chr9:72659613 5'GT 72659613 Upstream 64bp
chr9 72659550 72659550 1 + G A SARC 72659567 + 72659547 72659587 41 TTTGAAGAGAGCACTTGCGGCTTTGACTCCGTGTTGGCCTC TTTAAAGAGAGCACTTGCGGCTTTGACTCCGTGTTGGCCTC < 41bp 1 0.179535578567343 1 0.142364263534546 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659567 chr9:72659550 nonsynonymous SNV 0.998 4 4 hm5C_associated_SNPs_32421 0 0 0 0 2 MAMDC2 chr9:72659500 3'AG 72659500 Downstream 51bp
chr9 72659550 72659550 1 + G A SARC 72659567 + 72659547 72659587 41 TTTGAAGAGAGCACTTGCGGCTTTGACTCCGTGTTGGCCTC TTTAAAGAGAGCACTTGCGGCTTTGACTCCGTGTTGGCCTC < 41bp 1 0.179535578567343 1 0.142364263534546 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659567 chr9:72659550 nonsynonymous SNV 0.998 4 4 hm5C_associated_SNPs_32421 0 0 0 0 2 MAMDC2 chr9:72659613 5'GT 72659613 Upstream 64bp
chr15 93528743 93528743 1 + A G SARC 93528742 + 93528722 93528762 41 TCTCAGGCTCAGACAAATGACAGTGACTCTGACACTGAGTC TCTCAGGCTCAGACAAATGACGGTGACTCTGACACTGAGTC < 41bp 1 0.277457513590073 1 0.0738440454006195 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93528742 chr15:93528743 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_32423 0 0 1 0 1 CHD2 chr15:93528728 3'AG 93528728 Downstream 16bp
chr15 93528762 93528762 1 + C A SARC 93528742 + 93528722 93528762 41 TCTCAGGCTCAGACAAATGACAGTGACTCTGACACTGAGTC TCTCAGGCTCAGACAAATGACAGTGACTCTGACACTGAGTA < 41bp 1 0.229578521346873 1 0.0491126477718353 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93528742 chr15:93528762 nonsynonymous SNV 1.000 0 41 hm5C_associated_SNPs_32424 0 0 1 0 1 CHD2 chr15:93528728 3'AG 93528728 Downstream 35bp
chr19 12734576 12734576 1 + T G SARC 12734581 + 12734561 12734601 41 GTGGGCTCTGCTGGCTCCTTCACAGAAGAAACTCTACAGAG GTGGGCTCTGCTGGCGCCTTCACAGAAGAAACTCTACAGAG < 41bp 1 0.642554616789624 1 0.52692836523056 experiment 0.714890766420751 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF791 ENSG00000173875 CDS Human protein_coding chr19:12734581 chr19:12734576 synonymous SNV . 0 16 hm5C_associated_SNPs_32425 0 0 1 0 2 ZNF791 chr19:12734514 3'AG 12734514 Downstream 63bp
chr19 12734576 12734576 1 + T G SARC 12734581 + 12734561 12734601 41 GTGGGCTCTGCTGGCTCCTTCACAGAAGAAACTCTACAGAG GTGGGCTCTGCTGGCGCCTTCACAGAAGAAACTCTACAGAG < 41bp 1 0.642554616789624 1 0.52692836523056 experiment 0.714890766420751 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF791 ENSG00000173875 CDS Human protein_coding chr19:12734581 chr19:12734576 synonymous SNV . 0 16 hm5C_associated_SNPs_32425 0 0 1 0 2 ZNF791 chr19:12734640 5'GT 12734640 Upstream 65bp
chr19 41128389 41128389 1 + C A SARC 41128394 + 41128374 41128414 41 CCCCTGCCCCGCCGACCCAGCACACCTAGGCAGGGCCCTGT CCCCTGCCCCGCCGAACCAGCACACCTAGGCAGGGCCCTGT < 41bp 1 0.209861672440229 1 0.0886281728744507 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41128394 chr19:41128389 nonsynonymous SNV 0.163 2 16 hm5C_associated_SNPs_32426 0 0 0 0 1 LTBP4 chr19:41128306 3'AG 41128306 Downstream 84bp
chr22 32445989 32445989 1 + G A SARC 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATAGT < 41bp 1 0.249710754980328 1 0.242094337940216 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445989 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_32427 0 0 0 0 2 SLC5A1 chr22:32445930 3'AG 32445930 Downstream 60bp
chr22 32445989 32445989 1 + G A SARC 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATAGT < 41bp 1 0.249710754980328 1 0.242094337940216 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445989 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_32427 0 0 0 0 2 SLC5A1 chr22:32446001 5'GT 32446001 Upstream 13bp
chr14 103932063 103932063 1 + G T SARC 103932076 + 103932056 103932096 41 GATGTGTGGAGTCTGGGGGTCATTTTATACACACTAGTCAG GATGTGTTGAGTCTGGGGGTCATTTTATACACACTAGTCAG < 41bp 1 0.111360761414709 1 0.0669708847999573 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARK3 ENSG00000075413 CDS Human protein_coding chr14:103932076 chr14:103932063 nonsynonymous SNV 0.973 4 8 hm5C_associated_SNPs_32428 0 0 1 0 1 MARK3 chr14:103932130 5'GT 103932130 Upstream 68bp
chr15 43632472 43632472 1 + G T SARC 43632491 + 43632471 43632511 41 AGATGTCATAAAAGAATTTGCAGATGACGGCGTCAAGTACC ATATGTCATAAAAGAATTTGCAGATGACGGCGTCAAGTACC < 41bp 1 0.466365885033371 1 0.431919097900391 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ADAL ENSG00000168803 CDS Human protein_coding chr15:43632491 chr15:43632472 nonsynonymous SNV 1.000 5 2 hm5C_associated_SNPs_32429 0 0 1 0 1 ADAL chr15:43632550 5'GT 43632550 Upstream 79bp
chrX 70787352 70787352 1 + T A SARC 70787359 + 70787339 70787379 41 CCCTATTTTAGATTCTGAAGCGTGTTCCCAATAGTGTACTC CCCTATTTTAGATACTGAAGCGTGTTCCCAATAGTGTACTC < 41bp 1 0.214327900381433 1 0.114023178815842 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70787359 chrX:70787352 synonymous SNV . 0 14 hm5C_associated_SNPs_32430 0 0 1 0 1 OGT chrX:70787350 3'AG 70787350 Downstream 3bp
chrX 153663637 153663637 1 + G C SARC 153663636 + 153663616 153663656 41 CCAGGTTCATTCTGGCCAACCGCCTCTACCCAGTGTCTGCC CCAGGTTCATTCTGGCCAACCCCCTCTACCCAGTGTCTGCC < 41bp 1 0.135128420901427 1 0.0377902388572693 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP6AP1 ENSG00000071553 CDS Human protein_coding chrX:153663636 chrX:153663637 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_32432 0 0 1 0 1 ATP6AP1 chrX:153663620 3'AG 153663620 Downstream 18bp
chr1 118499757 118499757 1 + C T SARC 118499775 + 118499755 118499795 41 AACGAATTCATTCAGCTGGGCTCTGATGTTGAACTTATATG AATGAATTCATTCAGCTGGGCTCTGATGTTGAACTTATATG < 41bp 1 0.17532893698251 1 0.0771330893039703 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR3 ENSG00000065183 CDS Human protein_coding chr1:118499775 chr1:118499757 synonymous SNV . 0 3 hm5C_associated_SNPs_32433 0 0 1 0 2 WDR3 chr1:118499691 3'AG 118499691 Downstream 67bp
chr1 118499757 118499757 1 + C T SARC 118499775 + 118499755 118499795 41 AACGAATTCATTCAGCTGGGCTCTGATGTTGAACTTATATG AATGAATTCATTCAGCTGGGCTCTGATGTTGAACTTATATG < 41bp 1 0.17532893698251 1 0.0771330893039703 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR3 ENSG00000065183 CDS Human protein_coding chr1:118499775 chr1:118499757 synonymous SNV . 0 3 hm5C_associated_SNPs_32433 0 0 1 0 2 WDR3 chr1:118499819 5'GT 118499819 Upstream 63bp
chr10 105172954 105172954 1 + C T SARC 105172958 + 105172938 105172978 41 CTTCCTACAGCCTGGACGCCCACTCACCCGACTCTCTTGCC CTTCCTACAGCCTGGATGCCCACTCACCCGACTCTCTTGCC < 41bp 1 0.136529581837666 1 0.0752956569194794 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105172958 chr10:105172954 nonsynonymous SNV 0.631 1 17 hm5C_associated_SNPs_32434 0 0 1 0 1 PDCD11 chr10:105172873 3'AG 105172873 Downstream 82bp
chr17 54939227 54939227 1 + G A SARC 54939235 + 54939215 54939255 41 GGATACTGGGGCGGTGGCTGCAGACTATGGGAAGGGATGGG GGATACTGGGGCAGTGGCTGCAGACTATGGGAAGGGATGGG < 41bp 1 0.382441979319348 1 0.704069793224335 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DGKE ENSG00000153933 CDS Human protein_coding chr17:54939235 chr17:54939227 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_32435 0 0 0 0 2 DGKE chr17:54939152 3'AG 54939152 Downstream 76bp
chr17 54939227 54939227 1 + G A SARC 54939235 + 54939215 54939255 41 GGATACTGGGGCGGTGGCTGCAGACTATGGGAAGGGATGGG GGATACTGGGGCAGTGGCTGCAGACTATGGGAAGGGATGGG < 41bp 1 0.382441979319348 1 0.704069793224335 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DGKE ENSG00000153933 CDS Human protein_coding chr17:54939235 chr17:54939227 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_32435 0 0 0 0 2 DGKE chr17:54939279 5'GT 54939279 Upstream 53bp
chrX 49103971 49103971 1 + G T SARC 49103974 + 49103954 49103994 41 TAGGAGCCCCAGGCCCAGGCCACTCAGGTGTCAGATGTGCC TAGGAGCCCCAGGCCCATGCCACTCAGGTGTCAGATGTGCC < 41bp 1 0.112745781812875 1 0.0494912266731262 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49103974 chrX:49103971 nonsynonymous SNV 0.967 1 18 hm5C_associated_SNPs_32436 0 0 0 0 2 CCDC22 chrX:49103957 3'AG 49103957 Downstream 15bp
chrX 49103971 49103971 1 + G T SARC 49103974 + 49103954 49103994 41 TAGGAGCCCCAGGCCCAGGCCACTCAGGTGTCAGATGTGCC TAGGAGCCCCAGGCCCATGCCACTCAGGTGTCAGATGTGCC < 41bp 1 0.112745781812875 1 0.0494912266731262 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49103974 chrX:49103971 nonsynonymous SNV 0.967 1 18 hm5C_associated_SNPs_32436 0 0 0 0 2 CCDC22 chrX:49104019 5'GT 49104019 Upstream 49bp
chr4 160264507 160264507 1 + G T SARC 160264487 + 160264467 160264507 41 TGAGAAGCTAAGGATGATTGCAAAAGAAATTCGTCACGTTG TGAGAAGCTAAGGATGATTGCAAAAGAAATTCGTCACGTTT < 41bp 1 0.58980453074421 1 0.617821455001831 experiment 0.82039093851158 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160264487 chr4:160264507 nonsynonymous SNV 0.994 1 41 hm5C_associated_SNPs_32438 0 0 1 0 2 RAPGEF2 chr4:160264433 3'AG 160264433 Downstream 75bp
chr4 160264507 160264507 1 + G T SARC 160264487 + 160264467 160264507 41 TGAGAAGCTAAGGATGATTGCAAAAGAAATTCGTCACGTTG TGAGAAGCTAAGGATGATTGCAAAAGAAATTCGTCACGTTT < 41bp 1 0.58980453074421 1 0.617821455001831 experiment 0.82039093851158 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160264487 chr4:160264507 nonsynonymous SNV 0.994 1 41 hm5C_associated_SNPs_32438 0 0 1 0 2 RAPGEF2 chr4:160264556 5'GT 160264556 Upstream 50bp
chr2 220473312 220473312 1 + C G SARC 220473305 + 220473285 220473325 41 TTCTCTTGGTCTCTCCACAGCGGAACTCTGTCGCCCCTTGT TTCTCTTGGTCTCTCCACAGCGGAACTGTGTCGCCCCTTGT < 41bp 1 0.577293851203943 1 0.479629755020142 experiment 0.845412297592113 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STK11IP ENSG00000144589 CDS Human protein_coding chr2:220473305 chr2:220473312 synonymous SNV . 0 28 hm5C_associated_SNPs_32439 0 0 1 0 1 STK11IP chr2:220473305 3'AG 220473305 Downstream 8bp
chr11 57575922 57575922 1 + C T SARC 57575904 + 57575884 57575924 41 CTCTGCGTCAAGAGAAGGCTCTTTCTGCCATAGCTGACCTC CTCTGCGTCAAGAGAAGGCTCTTTCTGCCATAGCTGACTTC < 41bp 1 0.0755986218855203 1 0.0472707152366638 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57575904 chr11:57575922 nonsynonymous SNV 0.994 5 39 hm5C_associated_SNPs_32440 0 0 1 0 2 CTNND1 chr11:57575862 3'AG 57575862 Downstream 61bp
chr11 57575922 57575922 1 + C T SARC 57575904 + 57575884 57575924 41 CTCTGCGTCAAGAGAAGGCTCTTTCTGCCATAGCTGACCTC CTCTGCGTCAAGAGAAGGCTCTTTCTGCCATAGCTGACTTC < 41bp 1 0.0755986218855203 1 0.0472707152366638 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57575904 chr11:57575922 nonsynonymous SNV 0.994 5 39 hm5C_associated_SNPs_32440 0 0 1 0 2 CTNND1 chr11:57576012 5'GT 57576012 Upstream 91bp
chr7 794308 794308 1 + C T SARC 794297 + 794277 794317 41 AGATCCTCCCTGCCCTGTGCCACGACATCACCGACTGGGTG AGATCCTCCCTGCCCTGTGCCACGACATCACTGACTGGGTG < 41bp 1 0.746711589752234 1 0.225518673658371 experiment 0.506576820495532 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:794297 chr7:794308 synonymous SNV . 0 32 hm5C_associated_SNPs_32448 0 0 1 0 1 DNAAF5 chr7:794226 3'AG 794226 Downstream 83bp
chr5 1036455 1036455 1 + T A SARC 1036447 + 1036427 1036467 41 GAGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGG GAGAACACGGAGCGCAGAAACCACTACCAGGACCTCGCCGG < 41bp 1 0.212660742188896 1 0.193335443735123 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036447 chr5:1036455 nonsynonymous SNV 0.996 4 29 hm5C_associated_SNPs_32449 0 0 0 0 2 NKD2 chr5:1036372 3'AG 1036372 Downstream 84bp
chr5 1036455 1036455 1 + T A SARC 1036447 + 1036427 1036467 41 GAGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGG GAGAACACGGAGCGCAGAAACCACTACCAGGACCTCGCCGG < 41bp 1 0.212660742188896 1 0.193335443735123 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036447 chr5:1036455 nonsynonymous SNV 0.996 4 29 hm5C_associated_SNPs_32449 0 0 0 0 2 NKD2 chr5:1036499 5'GT 1036499 Upstream 45bp
chr5 1036455 1036455 1 + T A SARC 1036448 + 1036428 1036468 41 AGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGGG AGAACACGGAGCGCAGAAACCACTACCAGGACCTCGCCGGG < 41bp 1 0.572111770597927 1 0.26235020160675 experiment 0.855776458804145 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036448 chr5:1036455 nonsynonymous SNV 0.996 4 28 hm5C_associated_SNPs_32450 0 0 0 0 2 NKD2 chr5:1036372 3'AG 1036372 Downstream 84bp
chr5 1036455 1036455 1 + T A SARC 1036448 + 1036428 1036468 41 AGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGGG AGAACACGGAGCGCAGAAACCACTACCAGGACCTCGCCGGG < 41bp 1 0.572111770597927 1 0.26235020160675 experiment 0.855776458804145 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036448 chr5:1036455 nonsynonymous SNV 0.996 4 28 hm5C_associated_SNPs_32450 0 0 0 0 2 NKD2 chr5:1036499 5'GT 1036499 Upstream 45bp
chr14 73550231 73550231 1 + A T SARC 73550235 + 73550215 73550255 41 TTTTGAGCTGGAAGAGAGTACAAGGTGCTTCCGGAAAGCTT TTTTGAGCTGGAAGAGTGTACAAGGTGCTTCCGGAAAGCTT < 41bp 1 0.587062360122631 1 0.471704095602036 experiment 0.825875279754737 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73550235 chr14:73550231 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_32453 0 0 1 0 2 RBM25 chr14:73550202 3'AG 73550202 Downstream 30bp
chr14 73550231 73550231 1 + A T SARC 73550235 + 73550215 73550255 41 TTTTGAGCTGGAAGAGAGTACAAGGTGCTTCCGGAAAGCTT TTTTGAGCTGGAAGAGTGTACAAGGTGCTTCCGGAAAGCTT < 41bp 1 0.587062360122631 1 0.471704095602036 experiment 0.825875279754737 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73550235 chr14:73550231 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_32453 0 0 1 0 2 RBM25 chr14:73550259 5'GT 73550259 Upstream 29bp
chr7 106797466 106797466 1 + G T SARC 106797463 + 106797443 106797483 41 TTCTTTTTTCATTGTAGAATCTGGAGAAGTGAAAATTACTA TTCTTTTTTCATTGTAGAATCTGTAGAAGTGAAAATTACTA < 41bp 1 0.442372443848859 1 0.401453495025635 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106797463 chr7:106797466 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_32454 0 0 1 0 2 PRKAR2B chr7:106797429 3'AG 106797429 Downstream 38bp
chr7 106797466 106797466 1 + G T SARC 106797463 + 106797443 106797483 41 TTCTTTTTTCATTGTAGAATCTGGAGAAGTGAAAATTACTA TTCTTTTTTCATTGTAGAATCTGTAGAAGTGAAAATTACTA < 41bp 1 0.442372443848859 1 0.401453495025635 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106797463 chr7:106797466 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_32454 0 0 1 0 2 PRKAR2B chr7:106797494 5'GT 106797494 Upstream 29bp
chr22 38352837 38352837 1 + G T SARC 38352823 + 38352803 38352843 41 ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCC ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGATAATGCC < 41bp 1 0.757209189223632 1 0.730084240436554 experiment 0.485581621552737 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352823 chr22:38352837 nonsynonymous SNV 0.984 1 35 hm5C_associated_SNPs_32457 0 0 1 0 3 POLR2F chr22:38352780 3'AG 38352780 Downstream 58bp
chr22 38352837 38352837 1 + G T SARC 38352823 + 38352803 38352843 41 ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCC ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGATAATGCC < 41bp 1 0.757209189223632 1 0.730084240436554 experiment 0.485581621552737 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352823 chr22:38352837 nonsynonymous SNV 0.984 1 35 hm5C_associated_SNPs_32457 0 0 1 0 3 POLR2F chr22:38352849 5'GT 38352849 Upstream 13bp
chr22 38352837 38352837 1 + G T SARC 38352823 + 38352803 38352843 41 ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCC ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGATAATGCC < 41bp 1 0.757209189223632 1 0.730084240436554 experiment 0.485581621552737 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352823 chr22:38352837 nonsynonymous SNV 0.984 1 35 hm5C_associated_SNPs_32457 0 0 1 0 3 POLR2F chr22:38352908 5'GT 38352908 Upstream 72bp
chr22 38352837 38352837 1 + G T SARC 38352831 + 38352811 38352851 41 GAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT GAGGATGAAGGGCTAGATGACTTGGATAATGCCGAAGAGGT < 41bp 1 0.559425010237742 1 0.223052978515625 experiment 0.881149979524516 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352831 chr22:38352837 nonsynonymous SNV 0.984 1 27 hm5C_associated_SNPs_32458 0 0 1 0 3 POLR2F chr22:38352780 3'AG 38352780 Downstream 58bp
chr22 38352837 38352837 1 + G T SARC 38352831 + 38352811 38352851 41 GAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT GAGGATGAAGGGCTAGATGACTTGGATAATGCCGAAGAGGT < 41bp 1 0.559425010237742 1 0.223052978515625 experiment 0.881149979524516 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352831 chr22:38352837 nonsynonymous SNV 0.984 1 27 hm5C_associated_SNPs_32458 0 0 1 0 3 POLR2F chr22:38352849 5'GT 38352849 Upstream 13bp
chr22 38352837 38352837 1 + G T SARC 38352831 + 38352811 38352851 41 GAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT GAGGATGAAGGGCTAGATGACTTGGATAATGCCGAAGAGGT < 41bp 1 0.559425010237742 1 0.223052978515625 experiment 0.881149979524516 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352831 chr22:38352837 nonsynonymous SNV 0.984 1 27 hm5C_associated_SNPs_32458 0 0 1 0 3 POLR2F chr22:38352908 5'GT 38352908 Upstream 72bp
chr22 38352837 38352837 1 + G T SARC 38352843 + 38352823 38352863 41 CTAGATGACTTGGAGAATGCCGAAGAGGTCAGTATTCAGCC CTAGATGACTTGGATAATGCCGAAGAGGTCAGTATTCAGCC < 41bp 1 0.633979761933704 1 0.528724193572998 experiment 0.732040476132592 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352843 chr22:38352837 nonsynonymous SNV 0.984 1 15 hm5C_associated_SNPs_32459 0 0 1 0 3 POLR2F chr22:38352780 3'AG 38352780 Downstream 58bp
chr22 38352837 38352837 1 + G T SARC 38352843 + 38352823 38352863 41 CTAGATGACTTGGAGAATGCCGAAGAGGTCAGTATTCAGCC CTAGATGACTTGGATAATGCCGAAGAGGTCAGTATTCAGCC < 41bp 1 0.633979761933704 1 0.528724193572998 experiment 0.732040476132592 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352843 chr22:38352837 nonsynonymous SNV 0.984 1 15 hm5C_associated_SNPs_32459 0 0 1 0 3 POLR2F chr22:38352849 5'GT 38352849 Upstream 13bp
chr22 38352837 38352837 1 + G T SARC 38352843 + 38352823 38352863 41 CTAGATGACTTGGAGAATGCCGAAGAGGTCAGTATTCAGCC CTAGATGACTTGGATAATGCCGAAGAGGTCAGTATTCAGCC < 41bp 1 0.633979761933704 1 0.528724193572998 experiment 0.732040476132592 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352843 chr22:38352837 nonsynonymous SNV 0.984 1 15 hm5C_associated_SNPs_32459 0 0 1 0 3 POLR2F chr22:38352908 5'GT 38352908 Upstream 72bp
chr5 14359550 14359550 1 + G T SARC 14359530 + 14359510 14359550 41 TCAACCACATTGAGACGGTGCTGCAGCAGCTGGACGAGGCG TCAACCACATTGAGACGGTGCTGCAGCAGCTGGACGAGGCT < 41bp 1 0.309215325034477 1 0.531204164028168 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359530 chr5:14359550 synonymous SNV . 0 41 hm5C_associated_SNPs_32460 0 0 1 0 2 TRIO chr5:14359466 3'AG 14359466 Downstream 85bp
chr5 14359550 14359550 1 + G T SARC 14359530 + 14359510 14359550 41 TCAACCACATTGAGACGGTGCTGCAGCAGCTGGACGAGGCG TCAACCACATTGAGACGGTGCTGCAGCAGCTGGACGAGGCT < 41bp 1 0.309215325034477 1 0.531204164028168 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359530 chr5:14359550 synonymous SNV . 0 41 hm5C_associated_SNPs_32460 0 0 1 0 2 TRIO chr5:14359640 5'GT 14359640 Upstream 91bp
chr5 14359550 14359550 1 + G T SARC 14359551 + 14359531 14359571 41 TGCAGCAGCTGGACGAGGCGCAGTCGCAGATGGAGGAGCTC TGCAGCAGCTGGACGAGGCTCAGTCGCAGATGGAGGAGCTC < 41bp 1 0.0834602996074458 1 0.246335715055466 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359551 chr5:14359550 synonymous SNV . 0 20 hm5C_associated_SNPs_32461 0 0 1 0 2 TRIO chr5:14359466 3'AG 14359466 Downstream 85bp
chr5 14359550 14359550 1 + G T SARC 14359551 + 14359531 14359571 41 TGCAGCAGCTGGACGAGGCGCAGTCGCAGATGGAGGAGCTC TGCAGCAGCTGGACGAGGCTCAGTCGCAGATGGAGGAGCTC < 41bp 1 0.0834602996074458 1 0.246335715055466 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359551 chr5:14359550 synonymous SNV . 0 20 hm5C_associated_SNPs_32461 0 0 1 0 2 TRIO chr5:14359640 5'GT 14359640 Upstream 91bp
chr5 14359550 14359550 1 + G T SARC 14359555 + 14359535 14359575 41 GCAGCTGGACGAGGCGCAGTCGCAGATGGAGGAGCTCTTCC GCAGCTGGACGAGGCTCAGTCGCAGATGGAGGAGCTCTTCC < 41bp 1 0.593170604039369 1 0.858298540115356 experiment 0.813658791921262 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359555 chr5:14359550 synonymous SNV . 0 16 hm5C_associated_SNPs_32462 0 0 1 0 2 TRIO chr5:14359466 3'AG 14359466 Downstream 85bp
chr5 14359550 14359550 1 + G T SARC 14359555 + 14359535 14359575 41 GCAGCTGGACGAGGCGCAGTCGCAGATGGAGGAGCTCTTCC GCAGCTGGACGAGGCTCAGTCGCAGATGGAGGAGCTCTTCC < 41bp 1 0.593170604039369 1 0.858298540115356 experiment 0.813658791921262 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359555 chr5:14359550 synonymous SNV . 0 16 hm5C_associated_SNPs_32462 0 0 1 0 2 TRIO chr5:14359640 5'GT 14359640 Upstream 91bp
chr17 40936573 40936573 1 + G A SARC 40936572 + 40936552 40936592 41 CTCCGAGTGCCAGAATGCCGCGCAAATCTACCGCAAGGTCA CTCCGAGTGCCAGAATGCCGCACAAATCTACCGCAAGGTCA < 41bp 1 0.570525419757195 1 0.119558721780777 experiment 0.858949160485611 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WNK4 ENSG00000126562 CDS Human protein_coding chr17:40936572 chr17:40936573 synonymous SNV . 0 22 hm5C_associated_SNPs_32463 0 0 0 0 1 WNK4 chr17:40936597 5'GT 40936597 Upstream 25bp
chr9 100418026 100418026 1 + C T SARC 100418035 + 100418015 100418055 41 AACTTCCAGTTCCGTTGGAGCTGGGAAGATTGGTAAGTGAT AACTTCCAGTTTCGTTGGAGCTGGGAAGATTGGTAAGTGAT < 41bp 1 0.510313669134923 1 0.569613218307495 experiment 0.979372661730155 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100418035 chr9:100418026 synonymous SNV . 0 12 hm5C_associated_SNPs_32464 0 0 1 0 2 NCBP1 chr9:100417984 3'AG 100417984 Downstream 43bp
chr9 100418026 100418026 1 + C T SARC 100418035 + 100418015 100418055 41 AACTTCCAGTTCCGTTGGAGCTGGGAAGATTGGTAAGTGAT AACTTCCAGTTTCGTTGGAGCTGGGAAGATTGGTAAGTGAT < 41bp 1 0.510313669134923 1 0.569613218307495 experiment 0.979372661730155 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100418035 chr9:100418026 synonymous SNV . 0 12 hm5C_associated_SNPs_32464 0 0 1 0 2 NCBP1 chr9:100418046 5'GT 100418046 Upstream 21bp
chr1 183881229 183881229 1 + T C SARC 183881247 + 183881227 183881267 41 GGTCTGACATGATCACCAGTCCCACTCCCACCAAAGAGCAG GGCCTGACATGATCACCAGTCCCACTCCCACCAAAGAGCAG < 41bp 1 0.107482152909163 1 0.040304958820343 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RGL1 ENSG00000143344 CDS Human protein_coding chr1:183881247 chr1:183881229 nonsynonymous SNV 0.939 0 3 hm5C_associated_SNPs_32465 0 0 0 0 1 RGL1 chr1:183881216 3'AG 183881216 Downstream 14bp
chr1 183094669 183094669 1 + G A SARC 183094656 + 183094636 183094676 41 GCTTGTGACCCTGGATTCTACAATCTGCAGAGTGGGCAAGG GCTTGTGACCCTGGATTCTACAATCTGCAGAGTAGGCAAGG < 41bp 1 0.14426770577856 1 0.135522097349167 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183094656 chr1:183094669 nonsynonymous SNV 0.998 4 34 hm5C_associated_SNPs_32466 0 0 1 0 1 LAMC1 chr1:183094685 5'GT 183094685 Upstream 17bp
chr5 172315757 172315757 1 + G T SARC 172315759 + 172315739 172315779 41 CAGCCAACGTACACCGGGGCCATTAGTGAGTAGCCAACCTC CAGCCAACGTACACCGGGTCCATTAGTGAGTAGCCAACCTC < 41bp 1 0.190553822164734 1 0.0318441987037659 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ERGIC1 ENSG00000113719 CDS Human protein_coding chr5:172315759 chr5:172315757 nonsynonymous SNV 0.993 3 19 hm5C_associated_SNPs_32467 0 0 1 0 2 ERGIC1 chr5:172315702 3'AG 172315702 Downstream 56bp
chr5 172315757 172315757 1 + G T SARC 172315759 + 172315739 172315779 41 CAGCCAACGTACACCGGGGCCATTAGTGAGTAGCCAACCTC CAGCCAACGTACACCGGGTCCATTAGTGAGTAGCCAACCTC < 41bp 1 0.190553822164734 1 0.0318441987037659 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ERGIC1 ENSG00000113719 CDS Human protein_coding chr5:172315759 chr5:172315757 nonsynonymous SNV 0.993 3 19 hm5C_associated_SNPs_32467 0 0 1 0 2 ERGIC1 chr5:172315763 5'GT 172315763 Upstream 7bp
chr14 104565266 104565266 1 + T A SARC 104565260 + 104565240 104565280 41 GGTAGACGCTCGGAGGTTCGCAGCTTTCTGCTCCCCGAACC GGTAGACGCTCGGAGGTTCGCAGCTTACTGCTCCCCGAACC < 41bp 1 0.792049845146106 1 0.607640862464905 experiment 0.415900309707788 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control ASPG ENSG00000166183 CDS Human protein_coding chr14:104565260 chr14:104565266 nonsynonymous SNV 0.983 3 27 hm5C_associated_SNPs_32468 0 0 0 0 2 ASPG chr14:104565190 3'AG 104565190 Downstream 77bp
chr14 104565266 104565266 1 + T A SARC 104565260 + 104565240 104565280 41 GGTAGACGCTCGGAGGTTCGCAGCTTTCTGCTCCCCGAACC GGTAGACGCTCGGAGGTTCGCAGCTTACTGCTCCCCGAACC < 41bp 1 0.792049845146106 1 0.607640862464905 experiment 0.415900309707788 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control ASPG ENSG00000166183 CDS Human protein_coding chr14:104565260 chr14:104565266 nonsynonymous SNV 0.983 3 27 hm5C_associated_SNPs_32468 0 0 0 0 2 ASPG chr14:104565316 5'GT 104565316 Upstream 51bp
chr19 42398371 42398371 1 + C A SARC 42398364 + 42398344 42398384 41 GACAAGAAGTCGGGGAGGAACTTCTTCCGGAAAAAGGTGCT GACAAGAAGTCGGGGAGGAACTTCTTCAGGAAAAAGGTGCT < 41bp 1 0.134309500828248 1 0.388009250164032 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42398364 chr19:42398371 synonymous SNV . 0 28 hm5C_associated_SNPs_32469 0 0 0 0 2 ARHGEF1 chr19:42398280 3'AG 42398280 Downstream 92bp
chr19 42398371 42398371 1 + C A SARC 42398364 + 42398344 42398384 41 GACAAGAAGTCGGGGAGGAACTTCTTCCGGAAAAAGGTGCT GACAAGAAGTCGGGGAGGAACTTCTTCAGGAAAAAGGTGCT < 41bp 1 0.134309500828248 1 0.388009250164032 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42398364 chr19:42398371 synonymous SNV . 0 28 hm5C_associated_SNPs_32469 0 0 0 0 2 ARHGEF1 chr19:42398379 5'GT 42398379 Upstream 9bp
chr11 68204446 68204446 1 + G T SARC 68204450 + 68204430 68204470 41 CCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG CCCCGACTGTATCGACTGCTCCGACGAGCTCATGTGTGGTG < 41bp 1 0.186735038718159 1 0.141347348690033 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204450 chr11:68204446 nonsynonymous SNV 0.247 4 17 hm5C_associated_SNPs_32470 0 0 1 0 2 LRP5 chr11:68204357 3'AG 68204357 Downstream 90bp
chr11 68204446 68204446 1 + G T SARC 68204450 + 68204430 68204470 41 CCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG CCCCGACTGTATCGACTGCTCCGACGAGCTCATGTGTGGTG < 41bp 1 0.186735038718159 1 0.141347348690033 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204450 chr11:68204446 nonsynonymous SNV 0.247 4 17 hm5C_associated_SNPs_32470 0 0 1 0 2 LRP5 chr11:68204467 5'GT 68204467 Upstream 22bp
chr11 68204446 68204446 1 + G T SARC 68204451 + 68204431 68204471 41 CCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTGA CCCGACTGTATCGACTGCTCCGACGAGCTCATGTGTGGTGA < 41bp 1 0.39918423949541 1 0.63078761100769 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204451 chr11:68204446 nonsynonymous SNV 0.247 4 16 hm5C_associated_SNPs_32471 0 0 1 0 2 LRP5 chr11:68204357 3'AG 68204357 Downstream 90bp
chr11 68204446 68204446 1 + G T SARC 68204451 + 68204431 68204471 41 CCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTGA CCCGACTGTATCGACTGCTCCGACGAGCTCATGTGTGGTGA < 41bp 1 0.39918423949541 1 0.63078761100769 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204451 chr11:68204446 nonsynonymous SNV 0.247 4 16 hm5C_associated_SNPs_32471 0 0 1 0 2 LRP5 chr11:68204467 5'GT 68204467 Upstream 22bp
chr12 6943091 6943091 1 + G T SARC 6943099 + 6943079 6943119 41 TCCCTGGCAGATGTCCTTCTCCTGGAGGGTGTGACCTTGAC TCCCTGGCAGATTTCCTTCTCCTGGAGGGTGTGACCTTGAC < 41bp 1 0.227405251372092 1 0.835982620716095 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control P3H3 ENSG00000110811 CDS Human protein_coding chr12:6943099 chr12:6943091 nonsynonymous SNV 0.269 0 13 hm5C_associated_SNPs_32472 0 0 1 0 1 P3H3 chr12:6943089 3'AG 6943089 Downstream 3bp
chr18 29116347 29116347 1 + A G SARC 29116350 + 29116330 29116370 41 GTTTCTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAA GTTTCTCCGTCATTGACGAACCACCTGGCATGGCAGAAAAA < 41bp 1 0.0822151763078011 1 0.136341273784637 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116350 chr18:29116347 nonsynonymous SNV 0.495 0 18 hm5C_associated_SNPs_32473 0 0 1 0 1 DSG2 chr18:29116392 5'GT 29116392 Upstream 46bp
chr18 29116347 29116347 1 + A G SARC 29116354 + 29116334 29116374 41 CTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAATGGA CTCCGTCATTGACGAACCACCTGGCATGGCAGAAAAATGGA < 41bp 1 0.497213236333206 1 0.197096794843674 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116354 chr18:29116347 nonsynonymous SNV 0.495 0 14 hm5C_associated_SNPs_32474 0 0 1 0 1 DSG2 chr18:29116392 5'GT 29116392 Upstream 46bp
chr18 29116347 29116347 1 + A G SARC 29116363 + 29116343 29116383 41 TGACAAACCACCTGGCATGGCAGAAAAATGGAAAATAGCAC TGACGAACCACCTGGCATGGCAGAAAAATGGAAAATAGCAC < 41bp 1 0.592617478512666 1 0.321021944284439 experiment 0.814765042974669 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116363 chr18:29116347 nonsynonymous SNV 0.495 0 5 hm5C_associated_SNPs_32475 0 0 1 0 1 DSG2 chr18:29116392 5'GT 29116392 Upstream 46bp
chr1 17265593 17265593 1 + G A SARC 17265609 + 17265589 17265629 41 GCTCGCCCTGATCCACTCCGCCCTGCACAAGCGCCAGCTGC GCTCACCCTGATCCACTCCGCCCTGCACAAGCGCCAGCTGC < 41bp 1 0.0840922386484778 1 0.140870034694672 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CROCC ENSG00000058453 CDS Human protein_coding chr1:17265609 chr1:17265593 nonsynonymous SNV 0.937 0 5 hm5C_associated_SNPs_32476 0 0 0 0 1 CROCC chr1:17265637 5'GT 17265637 Upstream 45bp
chr9 93624510 93624510 1 + G A SARC 93624497 + 93624477 93624517 41 CTCTCTTCTAGGATCCGAGCCAGAGACAACAACGGCTCCTA CTCTCTTCTAGGATCCGAGCCAGAGACAACAACAGCTCCTA < 41bp 1 0.508774816342962 1 0.883859515190125 experiment 0.982450367314075 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYK ENSG00000165025 CDS Human protein_coding chr9:93624497 chr9:93624510 nonsynonymous SNV 0.850 4 34 hm5C_associated_SNPs_32477 0 0 0 0 1 SYK chr9:93624488 3'AG 93624488 Downstream 23bp
chr12 104720164 104720164 1 + A T SARC 104720169 + 104720149 104720189 41 GCTTGCACAAGAAAAATTGGCTTAGAAACCGTAGGGGTGAA GCTTGCACAAGAAAATTTGGCTTAGAAACCGTAGGGGTGAA < 41bp 1 0.202889341420675 1 0.0446728467941284 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TXNRD1 ENSG00000198431 CDS Human protein_coding chr12:104720169 chr12:104720164 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_32478 0 0 1 0 2 TXNRD1 chr12:104720125 3'AG 104720125 Downstream 40bp
chr12 104720164 104720164 1 + A T SARC 104720169 + 104720149 104720189 41 GCTTGCACAAGAAAAATTGGCTTAGAAACCGTAGGGGTGAA GCTTGCACAAGAAAATTTGGCTTAGAAACCGTAGGGGTGAA < 41bp 1 0.202889341420675 1 0.0446728467941284 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TXNRD1 ENSG00000198431 CDS Human protein_coding chr12:104720169 chr12:104720164 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_32478 0 0 1 0 2 TXNRD1 chr12:104720201 5'GT 104720201 Upstream 38bp
chr4 48835496 48835496 1 + G C SARC 48835494 + 48835474 48835514 41 AATGATGAAAGCTTCTGGTTCAGATGTGAGTTCAATTTTCT AATGATGAAAGCTTCTGGTTCACATGTGAGTTCAATTTTCT < 41bp 1 0.286962781247844 1 0.087748646736145 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48835494 chr4:48835496 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_32479 0 0 1 3 2 OCIAD1 chr4:48835418 3'AG 48835418 Downstream 79bp
chr4 48835496 48835496 1 + G C SARC 48835494 + 48835474 48835514 41 AATGATGAAAGCTTCTGGTTCAGATGTGAGTTCAATTTTCT AATGATGAAAGCTTCTGGTTCACATGTGAGTTCAATTTTCT < 41bp 1 0.286962781247844 1 0.087748646736145 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48835494 chr4:48835496 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_32479 0 0 1 3 2 OCIAD1 chr4:48835498 5'GT 48835498 Upstream 3bp
chr4 126337712 126337712 1 + T A SARC 126337729 + 126337709 126337749 41 GAGTAACACAGAGTCTGGATCGGGAAACAAAAGAGCGCTTT GAGAAACACAGAGTCTGGATCGGGAAACAAAAGAGCGCTTT < 41bp 1 0.619916643790314 1 0.951237916946411 experiment 0.760166712419373 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126337729 chr4:126337712 nonsynonymous SNV 0.722 2 4 hm5C_associated_SNPs_32480 0 0 0 0 1 FAT4 chr4:126337777 5'GT 126337777 Upstream 66bp
chr5 176524315 176524315 1 + T A SARC 176524296 + 176524276 176524316 41 CGCCCCACCTCTCGCAGGTACGGGCTGATGCGTGAGTGCTG CGCCCCACCTCTCGCAGGTACGGGCTGATGCGTGAGTGCAG < 41bp 1 0.541766472314992 1 0.582093358039856 experiment 0.916467055370017 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176524296 chr5:176524315 nonsynonymous SNV 0.980 5 40 hm5C_associated_SNPs_32481 0 0 1 0 2 FGFR4 chr5:176524293 3'AG 176524293 Downstream 23bp
chr5 176524315 176524315 1 + T A SARC 176524296 + 176524276 176524316 41 CGCCCCACCTCTCGCAGGTACGGGCTGATGCGTGAGTGCTG CGCCCCACCTCTCGCAGGTACGGGCTGATGCGTGAGTGCAG < 41bp 1 0.541766472314992 1 0.582093358039856 experiment 0.916467055370017 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176524296 chr5:176524315 nonsynonymous SNV 0.980 5 40 hm5C_associated_SNPs_32481 0 0 1 0 2 FGFR4 chr5:176524398 5'GT 176524398 Upstream 84bp
chr7 73604158 73604158 1 + G T SARC 73604152 + 73604132 73604172 41 TATTTTCCCTTTATCATTAGCTGTTGGGCGATCGGTCACTT TATTTTCCCTTTATCATTAGCTGTTGTGCGATCGGTCACTT < 41bp 1 0.241814518497093 1 0.0184942781925201 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4H ENSG00000106682 CDS Human protein_coding chr7:73604152 chr7:73604158 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_32482 0 0 1 0 2 EIF4H chr7:73604152 3'AG 73604152 Downstream 7bp
chr7 73604158 73604158 1 + G T SARC 73604152 + 73604132 73604172 41 TATTTTCCCTTTATCATTAGCTGTTGGGCGATCGGTCACTT TATTTTCCCTTTATCATTAGCTGTTGTGCGATCGGTCACTT < 41bp 1 0.241814518497093 1 0.0184942781925201 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4H ENSG00000106682 CDS Human protein_coding chr7:73604152 chr7:73604158 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_32482 0 0 1 0 2 EIF4H chr7:73604248 5'GT 73604248 Upstream 91bp
chr1 16057088 16057088 1 + C T SARC 16057075 + 16057055 16057095 41 GCCTTGTGCACTGGGAGGACCCCACAGACGAGTCCCTGGGC GCCTTGTGCACTGGGAGGACCCCACAGACGAGTTCCTGGGC < 41bp 1 0.0955173383790526 1 0.189346730709076 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16057075 chr1:16057088 nonsynonymous SNV 0.966 0 34 hm5C_associated_SNPs_32485 0 0 1 0 1 PLEKHM2 chr1:16057027 3'AG 16057027 Downstream 62bp
chr1 16057089 16057089 1 + C T SARC 16057075 + 16057055 16057095 41 GCCTTGTGCACTGGGAGGACCCCACAGACGAGTCCCTGGGC GCCTTGTGCACTGGGAGGACCCCACAGACGAGTCTCTGGGC < 41bp 1 0.094841996478901 1 0.168963879346848 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16057075 chr1:16057089 synonymous SNV . 0 35 hm5C_associated_SNPs_32486 0 0 1 0 1 PLEKHM2 chr1:16057027 3'AG 16057027 Downstream 63bp
chr3 124351509 124351509 1 + C T SARC 124351528 + 124351508 124351548 41 GCCTGGGGATGAAACAACCCCTCAGGGAGACAGCGCTGATG GTCTGGGGATGAAACAACCCCTCAGGGAGACAGCGCTGATG < 41bp 1 0.338698144260582 1 0.252815812826157 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KALRN ENSG00000160145 CDS Human protein_coding chr3:124351528 chr3:124351509 nonsynonymous SNV 1.000 0 2 hm5C_associated_SNPs_32488 0 0 1 0 1 KALRN chr3:124351550 5'GT 124351550 Upstream 42bp
chr3 124351510 124351510 1 + C T SARC 124351528 + 124351508 124351548 41 GCCTGGGGATGAAACAACCCCTCAGGGAGACAGCGCTGATG GCTTGGGGATGAAACAACCCCTCAGGGAGACAGCGCTGATG < 41bp 1 0.368469754795835 1 0.162541657686234 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KALRN ENSG00000160145 CDS Human protein_coding chr3:124351528 chr3:124351510 nonsynonymous SNV 1.000 0 3 hm5C_associated_SNPs_32489 0 0 1 0 1 KALRN chr3:124351550 5'GT 124351550 Upstream 41bp
chr4 186231899 186231899 1 + C T SARC 186231908 + 186231888 186231928 41 GAATCCGAATCCTGGGAGGCCCTGCCTATGACCAGCAAGAG GAATCCGAATCTTGGGAGGCCCTGCCTATGACCAGCAAGAG < 41bp 1 0.0674849819429303 1 0.415303081274033 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX25 ENSG00000109762 CDS Human protein_coding chr4:186231908 chr4:186231899 synonymous SNV . 0 12 hm5C_associated_SNPs_32491 0 0 1 0 1 SNX25 chr4:186231970 5'GT 186231970 Upstream 72bp
chr5 54654445 54654445 1 + G A SARC 54654434 + 54654414 54654454 41 AATACATTCAGATGTCTGGTCGTGCTGGAAGGAGAGGAATG AATACATTCAGATGTCTGGTCGTGCTGGAAGAAGAGGAATG < 41bp 1 0.205301999365429 1 0.15134185552597 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54654434 chr5:54654445 synonymous SNV . 0 32 hm5C_associated_SNPs_32492 0 0 1 0 2 SKIV2L2 chr5:54654401 3'AG 54654401 Downstream 45bp
chr5 54654445 54654445 1 + G A SARC 54654434 + 54654414 54654454 41 AATACATTCAGATGTCTGGTCGTGCTGGAAGGAGAGGAATG AATACATTCAGATGTCTGGTCGTGCTGGAAGAAGAGGAATG < 41bp 1 0.205301999365429 1 0.15134185552597 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54654434 chr5:54654445 synonymous SNV . 0 32 hm5C_associated_SNPs_32492 0 0 1 0 2 SKIV2L2 chr5:54654526 5'GT 54654526 Upstream 82bp
chr5 151183530 151183530 1 + C T SARC 151183550 + 151183530 151183570 41 CGCCTTCGGGGACCTGGAGGCCCTCGAGGTGGGCTGGGTGG TGCCTTCGGGGACCTGGAGGCCCTCGAGGTGGGCTGGGTGG < 41bp 1 0.346609898291754 1 0.483795493841171 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control G3BP1 ENSG00000145907 CDS Human protein_coding chr5:151183550 chr5:151183530 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_32493 0 0 1 0 1 G3BP1 chr5:151183446 3'AG 151183446 Downstream 85bp
chr7 76110035 76110035 1 + C T SARC 76110024 + 76110004 76110044 41 GCCCACAGCATCCCCTTGGGCCAGGCAGACCCCTCGCTGGC GCCCACAGCATCCCCTTGGGCCAGGCAGACCTCTCGCTGGC < 41bp 1 0.45935856087181 1 0.309232473373413 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110024 chr7:76110035 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_32494 0 0 0 0 1 DTX2 chr7:76110094 5'GT 76110094 Upstream 60bp
chr7 76110035 76110035 1 + C T SARC 76110025 + 76110005 76110045 41 CCCACAGCATCCCCTTGGGCCAGGCAGACCCCTCGCTGGCC CCCACAGCATCCCCTTGGGCCAGGCAGACCTCTCGCTGGCC < 41bp 1 0.311743150945145 1 0.646361768245697 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110025 chr7:76110035 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_32495 0 0 0 0 1 DTX2 chr7:76110094 5'GT 76110094 Upstream 60bp
chr7 76110035 76110035 1 + C T SARC 76110029 + 76110009 76110049 41 CAGCATCCCCTTGGGCCAGGCAGACCCCTCGCTGGCCCCTT CAGCATCCCCTTGGGCCAGGCAGACCTCTCGCTGGCCCCTT < 41bp 1 0.258265819501302 1 0.740117907524109 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110029 chr7:76110035 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_32496 0 0 0 0 1 DTX2 chr7:76110094 5'GT 76110094 Upstream 60bp
chr8 33355983 33355983 1 + G A SARC 33355999 + 33355979 33356019 41 TGAAGATCAGGATGGTAAATCCTCCAGTGAGGAGGAGGAAG TGAAAATCAGGATGGTAAATCCTCCAGTGAGGAGGAGGAAG < 41bp 1 0.117929669033383 1 0.0943751633167267 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAK16 ENSG00000198042 CDS Human protein_coding chr8:33355999 chr8:33355983 nonsynonymous SNV 1.000 0 5 hm5C_associated_SNPs_32497 0 0 1 0 1 MAK16 chr8:33355950 3'AG 33355950 Downstream 34bp
chr9 135919222 135919222 1 + C T SARC 135919215 + 135919195 135919235 41 CTCCGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC CTCCGGCCCGAGAAGGAGGCCTTTTTCTACCAGGAGCTGCC < 41bp 1 0.0441574133000113 1 0.0312131643295288 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919215 chr9:135919222 nonsynonymous SNV 0.996 2 28 hm5C_associated_SNPs_32498 0 0 1 0 1 GTF3C5 chr9:135919313 5'GT 135919313 Upstream 92bp
chr11 65826321 65826321 1 + C T SARC 65826306 + 65826286 65826326 41 TCCTCCTCTTGACAGAAAAACCGGAAGCGTAGGAACCGAAA TCCTCCTCTTGACAGAAAAACCGGAAGCGTAGGAATCGAAA < 41bp 1 0.550502508386256 1 0.398898124694824 experiment 0.898994983227488 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65826306 chr11:65826321 synonymous SNV . 0 36 hm5C_associated_SNPs_32499 0 0 1 0 1 SF3B2 chr11:65826301 3'AG 65826301 Downstream 21bp
chr12 56361650 56361650 1 + G T SARC 56361667 + 56361647 56361687 41 TGAGGGTGTGCCCAGTACTGCCATCCGAGAGATCTCTCTGC TGATGGTGTGCCCAGTACTGCCATCCGAGAGATCTCTCTGC < 41bp 1 0.0429928844622199 1 0.193522095680237 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK2 ENSG00000123374 CDS Human protein_coding chr12:56361667 chr12:56361650 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_32501 0 0 1 0 2 CDK2 chr12:56361641 3'AG 56361641 Downstream 10bp
chr12 56361650 56361650 1 + G T SARC 56361667 + 56361647 56361687 41 TGAGGGTGTGCCCAGTACTGCCATCCGAGAGATCTCTCTGC TGATGGTGTGCCCAGTACTGCCATCCGAGAGATCTCTCTGC < 41bp 1 0.0429928844622199 1 0.193522095680237 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK2 ENSG00000123374 CDS Human protein_coding chr12:56361667 chr12:56361650 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_32501 0 0 1 0 2 CDK2 chr12:56361718 5'GT 56361718 Upstream 69bp
chr12 56361650 56361650 1 + G T SARC 56361668 + 56361648 56361688 41 GAGGGTGTGCCCAGTACTGCCATCCGAGAGATCTCTCTGCT GATGGTGTGCCCAGTACTGCCATCCGAGAGATCTCTCTGCT < 41bp 1 0.27325485745414 1 0.119551211595535 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK2 ENSG00000123374 CDS Human protein_coding chr12:56361668 chr12:56361650 nonsynonymous SNV 0.997 4 3 hm5C_associated_SNPs_32502 0 0 1 0 2 CDK2 chr12:56361641 3'AG 56361641 Downstream 10bp
chr12 56361650 56361650 1 + G T SARC 56361668 + 56361648 56361688 41 GAGGGTGTGCCCAGTACTGCCATCCGAGAGATCTCTCTGCT GATGGTGTGCCCAGTACTGCCATCCGAGAGATCTCTCTGCT < 41bp 1 0.27325485745414 1 0.119551211595535 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK2 ENSG00000123374 CDS Human protein_coding chr12:56361668 chr12:56361650 nonsynonymous SNV 0.997 4 3 hm5C_associated_SNPs_32502 0 0 1 0 2 CDK2 chr12:56361718 5'GT 56361718 Upstream 69bp
chr13 42773788 42773788 1 + G A SARC 42773796 + 42773776 42773816 41 TTAATAATAAAAGAGAGGAGCACCCTGAAAAATGCAGGTAA TTAATAATAAAAAAGAGGAGCACCCTGAAAAATGCAGGTAA < 41bp 1 0.0814025416883977 1 0.172528654336929 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKH ENSG00000102780 CDS Human protein_coding chr13:42773796 chr13:42773788 nonsynonymous SNV 0.999 4 13 hm5C_associated_SNPs_32503 0 0 1 0 2 DGKH chr13:42773702 3'AG 42773702 Downstream 87bp
chr13 42773788 42773788 1 + G A SARC 42773796 + 42773776 42773816 41 TTAATAATAAAAGAGAGGAGCACCCTGAAAAATGCAGGTAA TTAATAATAAAAAAGAGGAGCACCCTGAAAAATGCAGGTAA < 41bp 1 0.0814025416883977 1 0.172528654336929 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKH ENSG00000102780 CDS Human protein_coding chr13:42773796 chr13:42773788 nonsynonymous SNV 0.999 4 13 hm5C_associated_SNPs_32503 0 0 1 0 2 DGKH chr13:42773812 5'GT 42773812 Upstream 25bp
chr13 42773788 42773788 1 + G A SARC 42773800 + 42773780 42773820 41 TAATAAAAGAGAGGAGCACCCTGAAAAATGCAGGTAATTTT TAATAAAAAAGAGGAGCACCCTGAAAAATGCAGGTAATTTT < 41bp 1 0.389578277143485 1 0.745263814926147 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKH ENSG00000102780 CDS Human protein_coding chr13:42773800 chr13:42773788 nonsynonymous SNV 0.999 4 9 hm5C_associated_SNPs_32504 0 0 1 0 2 DGKH chr13:42773702 3'AG 42773702 Downstream 87bp
chr13 42773788 42773788 1 + G A SARC 42773800 + 42773780 42773820 41 TAATAAAAGAGAGGAGCACCCTGAAAAATGCAGGTAATTTT TAATAAAAAAGAGGAGCACCCTGAAAAATGCAGGTAATTTT < 41bp 1 0.389578277143485 1 0.745263814926147 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKH ENSG00000102780 CDS Human protein_coding chr13:42773800 chr13:42773788 nonsynonymous SNV 0.999 4 9 hm5C_associated_SNPs_32504 0 0 1 0 2 DGKH chr13:42773812 5'GT 42773812 Upstream 25bp
chr14 73406981 73406981 1 + C T SARC 73406995 + 73406975 73407015 41 TTGCTCCCTGGACATAACAACTGCAACCCCCTGACGAAAGA TTGCTCTCTGGACATAACAACTGCAACCCCCTGACGAAAGA < 41bp 1 0.684401743749867 1 0.335794001817703 experiment 0.631196512500267 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73406995 chr14:73406981 nonsynonymous SNV 0.993 1 7 hm5C_associated_SNPs_32505 0 0 1 0 2 DCAF4 chr14:73406928 3'AG 73406928 Downstream 54bp
chr14 73406981 73406981 1 + C T SARC 73406995 + 73406975 73407015 41 TTGCTCCCTGGACATAACAACTGCAACCCCCTGACGAAAGA TTGCTCTCTGGACATAACAACTGCAACCCCCTGACGAAAGA < 41bp 1 0.684401743749867 1 0.335794001817703 experiment 0.631196512500267 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73406995 chr14:73406981 nonsynonymous SNV 0.993 1 7 hm5C_associated_SNPs_32505 0 0 1 0 2 DCAF4 chr14:73406960 3'AG 73406960 Downstream 22bp
chr16 11133720 11133720 1 + C A SARC 11133722 + 11133702 11133742 41 CATCAGGATCATGAACAACGCTGCCCAGCCAGGTGCCCACT CATCAGGATCATGAACAAAGCTGCCCAGCCAGGTGCCCACT < 41bp 1 0.315216561550839 1 0.0166054666042328 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11133722 chr16:11133720 nonsynonymous SNV 0.994 0 19 hm5C_associated_SNPs_32506 0 0 1 0 1 CLEC16A chr16:11133733 5'GT 11133733 Upstream 14bp
chr16 11133720 11133720 1 + C A SARC 11133726 + 11133706 11133746 41 AGGATCATGAACAACGCTGCCCAGCCAGGTGCCCACTTGGG AGGATCATGAACAAAGCTGCCCAGCCAGGTGCCCACTTGGG < 41bp 1 0.0720379504914897 1 0.0511912405490875 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11133726 chr16:11133720 nonsynonymous SNV 0.994 0 15 hm5C_associated_SNPs_32507 0 0 1 0 1 CLEC16A chr16:11133733 5'GT 11133733 Upstream 14bp
chr16 11133720 11133720 1 + C A SARC 11133730 + 11133710 11133750 41 TCATGAACAACGCTGCCCAGCCAGGTGCCCACTTGGGGTGT TCATGAACAAAGCTGCCCAGCCAGGTGCCCACTTGGGGTGT < 41bp 1 0.269874322523266 1 0.356685549020767 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11133730 chr16:11133720 nonsynonymous SNV 0.994 0 11 hm5C_associated_SNPs_32508 0 0 1 0 1 CLEC16A chr16:11133733 5'GT 11133733 Upstream 14bp
chr16 28844425 28844425 1 + C T SARC 28844423 + 28844403 28844443 41 GAACAGCCTGGATCCTTTTCCTCCCCGGATCTTAAAGGAGG GAACAGCCTGGATCCTTTTCCTTCCCGGATCTTAAAGGAGG < 41bp 1 0.0897582347849724 1 0.115086168050766 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28844423 chr16:28844425 nonsynonymous SNV 0.990 0 23 hm5C_associated_SNPs_32510 0 0 1 0 1 ATXN2L chr16:28844380 3'AG 28844380 Downstream 46bp
chr16 57714230 57714230 1 + G A SARC 57714235 + 57714215 57714255 41 GAGGTCAGACCTGAGGGGACCGTGTGCTGCTGTGACCACCT GAGGTCAGACCTGAGAGGACCGTGTGCTGCTGTGACCACCT < 41bp 1 0.352224755615334 1 0.0831769704818726 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714235 chr16:57714230 nonsynonymous SNV 0.003 0 16 hm5C_associated_SNPs_32511 0 0 0 0 2 ADGRG3 chr16:57714177 3'AG 57714177 Downstream 54bp
chr16 57714230 57714230 1 + G A SARC 57714235 + 57714215 57714255 41 GAGGTCAGACCTGAGGGGACCGTGTGCTGCTGTGACCACCT GAGGTCAGACCTGAGAGGACCGTGTGCTGCTGTGACCACCT < 41bp 1 0.352224755615334 1 0.0831769704818726 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714235 chr16:57714230 nonsynonymous SNV 0.003 0 16 hm5C_associated_SNPs_32511 0 0 0 0 2 ADGRG3 chr16:57714277 5'GT 57714277 Upstream 48bp
chr19 39013745 39013745 1 + C T SARC 39013755 + 39013735 39013775 41 ATCTACTGGTCCAAGTCCCACGTGAGTGCCCACCCCAACCG ATCTACTGGTTCAAGTCCCACGTGAGTGCCCACCCCAACCG < 41bp 1 0.397007589137362 1 0.509905993938446 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RYR1 ENSG00000196218 CDS Human protein_coding chr19:39013755 chr19:39013745 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_32512 0 0 0 0 2 RYR1 chr19:39013668 3'AG 39013668 Downstream 78bp
chr19 39013745 39013745 1 + C T SARC 39013755 + 39013735 39013775 41 ATCTACTGGTCCAAGTCCCACGTGAGTGCCCACCCCAACCG ATCTACTGGTTCAAGTCCCACGTGAGTGCCCACCCCAACCG < 41bp 1 0.397007589137362 1 0.509905993938446 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RYR1 ENSG00000196218 CDS Human protein_coding chr19:39013755 chr19:39013745 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_32512 0 0 0 0 2 RYR1 chr19:39013755 5'GT 39013755 Upstream 11bp
chr19 49469165 49469165 1 + G A SARC 49469156 + 49469136 49469176 41 ACCAGCGTGGCGGCCGCGCTCTCTTCCAGGACATCAAGGTA ACCAGCGTGGCGGCCGCGCTCTCTTCCAGAACATCAAGGTA < 41bp 1 0.386825318342082 1 0.154728889465332 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469156 chr19:49469165 nonsynonymous SNV 0.740 2 30 hm5C_associated_SNPs_32514 0 0 1 0 1 FTL chr19:49469173 5'GT 49469173 Upstream 9bp
chr19 50912129 50912129 1 + C T SARC 50912125 + 50912105 50912145 41 CCACAACCTGTGTTACACCACGCTCCTTCGGCCCGGGACTG CCACAACCTGTGTTACACCACGCTTCTTCGGCCCGGGACTG < 41bp 1 0.241250348841866 1 0.0305946469306946 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912125 chr19:50912129 synonymous SNV . 0 25 hm5C_associated_SNPs_32515 2 0 1 0 2 POLD1 chr19:50912042 3'AG 50912042 Downstream 88bp
chr19 50912129 50912129 1 + C T SARC 50912125 + 50912105 50912145 41 CCACAACCTGTGTTACACCACGCTCCTTCGGCCCGGGACTG CCACAACCTGTGTTACACCACGCTTCTTCGGCCCGGGACTG < 41bp 1 0.241250348841866 1 0.0305946469306946 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912125 chr19:50912129 synonymous SNV . 0 25 hm5C_associated_SNPs_32515 2 0 1 0 2 POLD1 chr19:50912158 5'GT 50912158 Upstream 30bp
chr19 55817697 55817697 1 + C T SARC 55817715 + 55817695 55817735 41 GTCTTCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTC GTTTTCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTC < 41bp 1 0.138685955101275 1 0.188266813755035 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55817715 chr19:55817697 synonymous SNV . 0 3 hm5C_associated_SNPs_32516 0 0 0 0 1 BRSK1 chr19:55817620 3'AG 55817620 Downstream 78bp
chr19 55898033 55898033 1 + T G SARC 55898017 + 55897997 55898037 41 GACTGTGGGCGTGGAGCCGGCAGCCGACGGCAAAGGTGTCG GACTGTGGGCGTGGAGCCGGCAGCCGACGGCAAAGGGGTCG < 41bp 1 0.555459801037031 1 0.383931577205658 experiment 0.889080397925939 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55898017 chr19:55898033 synonymous SNV . 0 37 hm5C_associated_SNPs_32517 0 0 1 0 2 RPL28 chr19:55897938 3'AG 55897938 Downstream 96bp
chr19 55898033 55898033 1 + T G SARC 55898017 + 55897997 55898037 41 GACTGTGGGCGTGGAGCCGGCAGCCGACGGCAAAGGTGTCG GACTGTGGGCGTGGAGCCGGCAGCCGACGGCAAAGGGGTCG < 41bp 1 0.555459801037031 1 0.383931577205658 experiment 0.889080397925939 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55898017 chr19:55898033 synonymous SNV . 0 37 hm5C_associated_SNPs_32517 0 0 1 0 2 RPL28 chr19:55898061 5'GT 55898061 Upstream 29bp
chr2 120124578 120124578 1 + G T SARC 120124570 + 120124550 120124590 41 GCCAGTGCAATCTGGGCGATCGCTTCCTGGTCCTCGCCTCC GCCAGTGCAATCTGGGCGATCGCTTCCTTGTCCTCGCCTCC < 41bp 1 0.228288181579873 1 0.488007009029388 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DBI ENSG00000155368 UTR5 Human protein_coding chr2:120124570 chr2:120124578 . . 0 29 hm5C_associated_SNPs_32521 0 0 1 0 2 DBI chr2:120124636 5'GT 120124636 Upstream 59bp
chr2 120124578 120124578 1 + G T SARC 120124570 + 120124550 120124590 41 GCCAGTGCAATCTGGGCGATCGCTTCCTGGTCCTCGCCTCC GCCAGTGCAATCTGGGCGATCGCTTCCTTGTCCTCGCCTCC < 41bp 1 0.228288181579873 1 0.488007009029388 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DBI ENSG00000155368 UTR5 Human protein_coding chr2:120124570 chr2:120124578 . . 0 29 hm5C_associated_SNPs_32521 0 0 1 0 2 DBI chr2:120124666 5'GT 120124666 Upstream 89bp
chr22 50857777 50857777 1 + G T SARC 50857784 + 50857764 50857804 41 TGTGTGTCCAGCAGGCAGGACTGTGTGGAGCAGCTTCTGAA TGTGTGTCCAGCATGCAGGACTGTGTGGAGCAGCTTCTGAA < 41bp 1 0.244600124004147 1 0.024797797203064 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP6R2;PPP6R2 ENSG00000100239;ENSG00000100239 exonic;splicing Human protein_coding chr22:50857784 chr22:50857777 nonsynonymous SNV 0.999 2 14 hm5C_associated_SNPs_32522 0 0 1 0 1 PPP6R2 chr22:50857775 3'AG 50857775 Downstream 3bp
chr22 50857777 50857777 1 + G T SARC 50857797 + 50857777 50857817 41 GGCAGGACTGTGTGGAGCAGCTTCTGAAGAACATGTTTGAT TGCAGGACTGTGTGGAGCAGCTTCTGAAGAACATGTTTGAT < 41bp 1 0.146034993719683 1 0.148570507764816 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP6R2;PPP6R2 ENSG00000100239;ENSG00000100239 exonic;splicing Human protein_coding chr22:50857797 chr22:50857777 nonsynonymous SNV 0.999 2 1 hm5C_associated_SNPs_32523 0 0 1 0 1 PPP6R2 chr22:50857775 3'AG 50857775 Downstream 3bp
chr1 36315805 36315805 1 + C A SARC 36315787 + 36315767 36315807 41 AGTGGCAATGTACCAGCAGGCACTACAGTGGATAGTACCAT AGTGGCAATGTACCAGCAGGCACTACAGTGGATAGTACAAT < 41bp 1 0.300668407486228 1 0.162241101264954 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AGO4 ENSG00000134698 CDS Human protein_coding chr1:36315787 chr1:36315805 synonymous SNV . 0 39 hm5C_associated_SNPs_32524 0 0 1 0 2 AGO4 chr1:36315758 3'AG 36315758 Downstream 48bp
chr1 36315805 36315805 1 + C A SARC 36315787 + 36315767 36315807 41 AGTGGCAATGTACCAGCAGGCACTACAGTGGATAGTACCAT AGTGGCAATGTACCAGCAGGCACTACAGTGGATAGTACAAT < 41bp 1 0.300668407486228 1 0.162241101264954 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AGO4 ENSG00000134698 CDS Human protein_coding chr1:36315787 chr1:36315805 synonymous SNV . 0 39 hm5C_associated_SNPs_32524 0 0 1 0 2 AGO4 chr1:36315859 5'GT 36315859 Upstream 55bp
chr8 121468857 121468857 1 + G T SARC 121468848 + 121468828 121468868 41 ATGTTGTATCTTTAGAAGATCTCAGAAATGTTATTGACTCA ATGTTGTATCTTTAGAAGATCTCAGAAATTTTATTGACTCA < 41bp 1 0.34023491602868 1 0.0929602682590485 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTBP ENSG00000172167 CDS Human protein_coding chr8:121468848 chr8:121468857 nonsynonymous SNV 0.994 0 30 hm5C_associated_SNPs_32525 0 0 1 0 2 MTBP chr8:121468793 3'AG 121468793 Downstream 65bp
chr8 121468857 121468857 1 + G T SARC 121468848 + 121468828 121468868 41 ATGTTGTATCTTTAGAAGATCTCAGAAATGTTATTGACTCA ATGTTGTATCTTTAGAAGATCTCAGAAATTTTATTGACTCA < 41bp 1 0.34023491602868 1 0.0929602682590485 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTBP ENSG00000172167 CDS Human protein_coding chr8:121468848 chr8:121468857 nonsynonymous SNV 0.994 0 30 hm5C_associated_SNPs_32525 0 0 1 0 2 MTBP chr8:121468910 5'GT 121468910 Upstream 54bp
chr9 139975182 139975182 1 + C T SARC 139975202 + 139975182 139975222 41 CCCCACTGAAGAACGCAGAGCCAGCCGACAGGGACAGTCCC TCCCACTGAAGAACGCAGAGCCAGCCGACAGGGACAGTCCC < 41bp 1 0.0792216012507189 1 0.59931355714798 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139975202 chr9:139975182 nonsynonymous SNV 0.950 4 1 hm5C_associated_SNPs_32526 0 0 1 0 1 UAP1L1 chr9:139975141 3'AG 139975141 Downstream 42bp
chrX 40450494 40450494 1 + T C SARC 40450488 + 40450468 40450508 41 GTGCTTTTCAATGTTTAGGACCTTTCTTGGCCAGGACTCGC GTGCTTTTCAATGTTTAGGACCTTTCCTGGCCAGGACTCGC < 41bp 1 0.0200589404626907 1 0.0158659815788269 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40450488 chrX:40450494 synonymous SNV . 0 27 hm5C_associated_SNPs_32528 0 0 1 0 1 ATP6AP2 chrX:40450486 3'AG 40450486 Downstream 9bp
chr3 170109027 170109027 1 + A G SARC 170109032 + 170109012 170109052 41 TTTAGAAAAAGACAAAGAGGCTGAATATGCAGGACAGGTAA TTTAGAAAAAGACAAGGAGGCTGAATATGCAGGACAGGTAA < 41bp 1 0.775161248805107 1 0.368760854005814 experiment 0.449677502389786 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIL ENSG00000136603 CDS Human protein_coding chr3:170109032 chr3:170109027 synonymous SNV . 0 16 hm5C_associated_SNPs_32529 0 0 1 0 1 SKIL chr3:170109048 5'GT 170109048 Upstream 22bp
chr3 49728609 49728609 1 + A G SARC 49728615 + 49728595 49728635 41 AAGGATGGCATCCAAGGGGGCCGGCATGTCTTTCTCCCGCA AAGGATGGCATCCAGGGGGGCCGGCATGTCTTTCTCCCGCA < 41bp 1 0.15461507781196 1 0.258670032024384 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49728615 chr3:49728609 nonsynonymous SNV 0.992 1 15 hm5C_associated_SNPs_32531 0 0 1 0 2 RNF123 chr3:49728563 3'AG 49728563 Downstream 47bp
chr3 49728609 49728609 1 + A G SARC 49728615 + 49728595 49728635 41 AAGGATGGCATCCAAGGGGGCCGGCATGTCTTTCTCCCGCA AAGGATGGCATCCAGGGGGGCCGGCATGTCTTTCTCCCGCA < 41bp 1 0.15461507781196 1 0.258670032024384 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49728615 chr3:49728609 nonsynonymous SNV 0.992 1 15 hm5C_associated_SNPs_32531 0 0 1 0 2 RNF123 chr3:49728680 5'GT 49728680 Upstream 72bp
chr3 49728609 49728609 1 + A G SARC 49728616 + 49728596 49728636 41 AGGATGGCATCCAAGGGGGCCGGCATGTCTTTCTCCCGCAA AGGATGGCATCCAGGGGGGCCGGCATGTCTTTCTCCCGCAA < 41bp 1 0.621668992732931 1 0.498040288686752 experiment 0.756662014534138 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49728616 chr3:49728609 nonsynonymous SNV 0.992 1 14 hm5C_associated_SNPs_32532 0 0 1 0 2 RNF123 chr3:49728563 3'AG 49728563 Downstream 47bp
chr3 49728609 49728609 1 + A G SARC 49728616 + 49728596 49728636 41 AGGATGGCATCCAAGGGGGCCGGCATGTCTTTCTCCCGCAA AGGATGGCATCCAGGGGGGCCGGCATGTCTTTCTCCCGCAA < 41bp 1 0.621668992732931 1 0.498040288686752 experiment 0.756662014534138 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49728616 chr3:49728609 nonsynonymous SNV 0.992 1 14 hm5C_associated_SNPs_32532 0 0 1 0 2 RNF123 chr3:49728680 5'GT 49728680 Upstream 72bp
chr3 183898716 183898716 1 + G A SARC 183898730 + 183898710 183898750 41 ATCGTCGGAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTG ATCGTCAGAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTG < 41bp 1 0.789486215523534 1 0.725479185581207 experiment 0.421027568952932 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183898730 chr3:183898716 nonsynonymous SNV 0.996 3 7 hm5C_associated_SNPs_32537 0 0 1 0 2 AP2M1 chr3:183898637 3'AG 183898637 Downstream 80bp
chr3 183898716 183898716 1 + G A SARC 183898730 + 183898710 183898750 41 ATCGTCGGAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTG ATCGTCAGAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTG < 41bp 1 0.789486215523534 1 0.725479185581207 experiment 0.421027568952932 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183898730 chr3:183898716 nonsynonymous SNV 0.996 3 7 hm5C_associated_SNPs_32537 0 0 1 0 2 AP2M1 chr3:183898772 5'GT 183898772 Upstream 57bp
chr1 183086567 183086567 1 + C T SARC 183086575 + 183086555 183086595 41 TCCTCGGTACTTCATTGCTCCTGGTAAGTAAGGCTAGAAAG TCCTCGGTACTTTATTGCTCCTGGTAAGTAAGGCTAGAAAG < 41bp 1 0.318510399932609 1 0.118433237075806 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183086575 chr1:183086567 synonymous SNV . 0 13 hm5C_associated_SNPs_32547 0 0 1 0 1 LAMC1 chr1:183086577 5'GT 183086577 Upstream 11bp
chr4 1806225 1806225 1 + C T SARC 1806242 + 1806222 1806262 41 TCTCCCGCTTCCCGCTCAAGCGACAGGTAACAGAAAGTAGA TCTTCCGCTTCCCGCTCAAGCGACAGGTAACAGAAAGTAGA < 41bp 1 0.59157062224326 1 0.742889583110809 experiment 0.816858755513479 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1806242 chr4:1806225 nonsynonymous SNV 0.990 5 4 hm5C_associated_SNPs_32548 0 0 0 0 1 FGFR3 chr4:1806247 5'GT 1806247 Upstream 23bp
chr14 61997257 61997257 1 + G A SARC 61997276 + 61997256 61997296 41 TGATGAGGTGGTCTACCCTACCTGGCTCCATGAAGATGCCA TAATGAGGTGGTCTACCCTACCTGGCTCCATGAAGATGCCA < 41bp 1 0.0960250499013799 1 0.0896862149238586 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRKCH ENSG00000027075;ENSG00000258989 CDS Human other chr14:61997276 chr14:61997257 nonsynonymous SNV 0.998 3 2 hm5C_associated_SNPs_32550 0 0 0 0 1 PRKCH chr14:61997313 5'GT 61997313 Upstream 57bp
chr12 56505265 56505265 1 + C A SARC 56505263 + 56505243 56505283 41 TTCTTCCTGTTTTCCAGGCCCTCCTCCAGAGTTCTGCAAGT TTCTTCCTGTTTTCCAGGCCCTACTCCAGAGTTCTGCAAGT < 41bp 1 0.129173382845662 1 0.0849402546882629 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56505263 chr12:56505265 synonymous SNV . 0 23 hm5C_associated_SNPs_32552 0 0 1 0 2 PA2G4 chr12:56505260 3'AG 56505260 Downstream 6bp
chr12 56505265 56505265 1 + C A SARC 56505263 + 56505243 56505283 41 TTCTTCCTGTTTTCCAGGCCCTCCTCCAGAGTTCTGCAAGT TTCTTCCTGTTTTCCAGGCCCTACTCCAGAGTTCTGCAAGT < 41bp 1 0.129173382845662 1 0.0849402546882629 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56505263 chr12:56505265 synonymous SNV . 0 23 hm5C_associated_SNPs_32552 0 0 1 0 2 PA2G4 chr12:56505313 5'GT 56505313 Upstream 49bp
chr22 42280865 42280865 1 + C A SARC 42280873 + 42280853 42280893 41 TCCTGCAGGATCCGCCTGTTCCGATGTACACATGGCGTTGT TCCTGCAGGATCAGCCTGTTCCGATGTACACATGGCGTTGT < 41bp 1 0.289534088737209 1 0.20135885477066 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42280873 chr22:42280865 synonymous SNV . 0 13 hm5C_associated_SNPs_32554 0 0 1 0 1 SREBF2 chr22:42280846 3'AG 42280846 Downstream 20bp
chr11 10772978 10772978 1 + G C SARC 10772973 + 10772953 10772993 41 CCCCATCATGTCGCGGGGCTCCATCGAGATTCCCCTCCGGG CCCCATCATGTCGCGGGGCTCCATCCAGATTCCCCTCCGGG < 41bp 1 0.0826967242442558 1 0.101043879985809 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTR9 ENSG00000198730 CDS Human protein_coding chr11:10772973 chr11:10772978 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_32555 0 0 1 0 1 CTR9 chr11:10773004 5'GT 10773004 Upstream 27bp
chr8 26223880 26223880 1 + G A SARC 26223862 + 26223842 26223882 41 CCTCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTGCA CCTCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTACA < 41bp 1 0.290833097376098 1 0.300659894943237 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223862 chr8:26223880 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_32556 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 50bp
chr8 26223880 26223880 1 + G A SARC 26223862 + 26223842 26223882 41 CCTCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTGCA CCTCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTACA < 41bp 1 0.290833097376098 1 0.300659894943237 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223862 chr8:26223880 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_32556 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 43bp
chr8 26223880 26223880 1 + G A SARC 26223864 + 26223844 26223884 41 TCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTGCATA TCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTACATA < 41bp 1 0.481524040823145 1 0.119374543428421 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223864 chr8:26223880 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_32557 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 50bp
chr8 26223880 26223880 1 + G A SARC 26223864 + 26223844 26223884 41 TCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTGCATA TCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTACATA < 41bp 1 0.481524040823145 1 0.119374543428421 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223864 chr8:26223880 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_32557 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 43bp
chr8 26223880 26223880 1 + G A SARC 26223878 + 26223858 26223898 41 TGTTCACTGTATGAAAATGACTGCATATTTGACAAATTTGA TGTTCACTGTATGAAAATGACTACATATTTGACAAATTTGA < 41bp 1 0.388888702081493 1 0.0968121588230133 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223878 chr8:26223880 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_32558 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 50bp
chr8 26223880 26223880 1 + G A SARC 26223878 + 26223858 26223898 41 TGTTCACTGTATGAAAATGACTGCATATTTGACAAATTTGA TGTTCACTGTATGAAAATGACTACATATTTGACAAATTTGA < 41bp 1 0.388888702081493 1 0.0968121588230133 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223878 chr8:26223880 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_32558 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 43bp
chr8 26223880 26223880 1 + G A SARC 26223881 + 26223861 26223901 41 TCACTGTATGAAAATGACTGCATATTTGACAAATTTGAATG TCACTGTATGAAAATGACTACATATTTGACAAATTTGAATG < 41bp 1 0.082855303060721 1 0.0730753242969513 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223881 chr8:26223880 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_32559 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 50bp
chr8 26223880 26223880 1 + G A SARC 26223881 + 26223861 26223901 41 TCACTGTATGAAAATGACTGCATATTTGACAAATTTGAATG TCACTGTATGAAAATGACTACATATTTGACAAATTTGAATG < 41bp 1 0.082855303060721 1 0.0730753242969513 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223881 chr8:26223880 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_32559 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 43bp
chr8 26223880 26223880 1 + G A SARC 26223890 + 26223870 26223910 41 GAAAATGACTGCATATTTGACAAATTTGAATGTTGTTGGAA GAAAATGACTACATATTTGACAAATTTGAATGTTGTTGGAA < 41bp 1 0.205038543085504 1 0.175263941287994 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223890 chr8:26223880 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_32560 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 50bp
chr8 26223880 26223880 1 + G A SARC 26223890 + 26223870 26223910 41 GAAAATGACTGCATATTTGACAAATTTGAATGTTGTTGGAA GAAAATGACTACATATTTGACAAATTTGAATGTTGTTGGAA < 41bp 1 0.205038543085504 1 0.175263941287994 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223890 chr8:26223880 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_32560 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 43bp
chr2 216197214 216197214 1 + A G SARC 216197204 + 216197184 216197224 41 TTTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCC TTTAGGTATTCCAGCCGCTGCCTCTTTCAAGCATGTCAGCC < 41bp 1 0.0438342924599657 1 0.135543435811996 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216197204 chr2:216197214 synonymous SNV . 0 31 hm5C_associated_SNPs_32561 0 0 1 0 1 ATIC chr2:216197230 5'GT 216197230 Upstream 17bp
chr2 216197214 216197214 1 + A G SARC 216197205 + 216197185 216197225 41 TTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCCC TTAGGTATTCCAGCCGCTGCCTCTTTCAAGCATGTCAGCCC < 41bp 1 0.368200932959668 1 0.24529692530632 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216197205 chr2:216197214 synonymous SNV . 0 30 hm5C_associated_SNPs_32562 0 0 1 0 1 ATIC chr2:216197230 5'GT 216197230 Upstream 17bp
chr3 15253704 15253704 1 + G A SARC 15253701 + 15253681 15253721 41 CTGAGTATCTGGAAAGAGTTCAAGCTCTACATTCAGCAGGT CTGAGTATCTGGAAAGAGTTCAAACTCTACATTCAGCAGGT < 41bp 1 0.281308341019294 1 0.298398673534393 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CAPN7 ENSG00000131375 CDS Human protein_coding chr3:15253701 chr3:15253704 nonsynonymous SNV 0.309 1 24 hm5C_associated_SNPs_32563 0 0 1 0 2 CAPN7 chr3:15253611 3'AG 15253611 Downstream 94bp
chr3 15253704 15253704 1 + G A SARC 15253701 + 15253681 15253721 41 CTGAGTATCTGGAAAGAGTTCAAGCTCTACATTCAGCAGGT CTGAGTATCTGGAAAGAGTTCAAACTCTACATTCAGCAGGT < 41bp 1 0.281308341019294 1 0.298398673534393 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CAPN7 ENSG00000131375 CDS Human protein_coding chr3:15253701 chr3:15253704 nonsynonymous SNV 0.309 1 24 hm5C_associated_SNPs_32563 0 0 1 0 2 CAPN7 chr3:15253719 5'GT 15253719 Upstream 16bp
chr19 45489826 45489826 1 + G T SARC 45489821 + 45489801 45489841 41 TGAAGGGCAGTGTGCCCCCTCCCCTGGATCAATGTAAGCTC TGAAGGGCAGTGTGCCCCCTCCCCTTGATCAATGTAAGCTC < 41bp 1 0.278332692054894 1 0.0901916027069092 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45489821 chr19:45489826 synonymous SNV . 0 26 hm5C_associated_SNPs_32565 0 0 1 0 1 CLPTM1 chr19:45489833 5'GT 45489833 Upstream 8bp
chr7 128483309 128483309 1 + C T SARC 128483319 + 128483299 128483339 41 CCTTCCACATCAAGGTGGACCCATCCCACGATGCCAGCAAA CCTTCCACATTAAGGTGGACCCATCCCACGATGCCAGCAAA < 41bp 1 0.011658779420513 1 0.174770295619965 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128483319 chr7:128483309 synonymous SNV . 0 11 hm5C_associated_SNPs_32566 0 0 0 0 2 FLNC chr7:128483283 3'AG 128483283 Downstream 27bp
chr7 128483309 128483309 1 + C T SARC 128483319 + 128483299 128483339 41 CCTTCCACATCAAGGTGGACCCATCCCACGATGCCAGCAAA CCTTCCACATTAAGGTGGACCCATCCCACGATGCCAGCAAA < 41bp 1 0.011658779420513 1 0.174770295619965 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128483319 chr7:128483309 synonymous SNV . 0 11 hm5C_associated_SNPs_32566 0 0 0 0 2 FLNC chr7:128483373 5'GT 128483373 Upstream 65bp
chr19 10370387 10370387 1 + A T SARC 10370393 + 10370373 10370413 41 CTCTGGCAGGACTCACGTTACAGACCCCTCTACCCCTTCAG CTCTGGCAGGACTCTCGTTACAGACCCCTCTACCCCTTCAG < 41bp 1 0.520649213767264 1 0.4022556245327 experiment 0.958701572465473 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10370393 chr19:10370387 synonymous SNV . 0 15 hm5C_associated_SNPs_32567 0 0 1 0 1 MRPL4 chr19:10370293 3'AG 10370293 Downstream 95bp
chr3 50220202 50220202 1 + G A SARC 50220185 + 50220165 50220205 41 AGAGGCGCCGCAGAGCCCCGCGGTGTACGCCCGCATCGGGC AGAGGCGCCGCAGAGCCCCGCGGTGTACGCCCGCATCAGGC < 41bp 1 0.369535803862221 1 0.829647600650787 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50220185 chr3:50220202 nonsynonymous SNV 0.981 4 38 hm5C_associated_SNPs_32568 0 0 0 0 1 SEMA3F chr3:50220216 5'GT 50220216 Upstream 15bp
chrX 49853394 49853394 1 + G T SARC 49853386 + 49853366 49853406 41 CCTCTTTATCCCTAGCATGGCTGTTGGTGCTATAGCAGGTC CCTCTTTATCCCTAGCATGGCTGTTGGTTCTATAGCAGGTC < 41bp 1 0.15270543090533 1 0.140689492225647 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLCN5 ENSG00000171365 CDS Human protein_coding chrX:49853386 chrX:49853394 nonsynonymous SNV 1.000 5 29 hm5C_associated_SNPs_32569 0 0 0 0 1 CLCN5 chrX:49853355 3'AG 49853355 Downstream 40bp
chr2 236817475 236817475 1 + T A SARC 236817455 + 236817435 236817475 41 GAAAGTCCCAGGGAAGAGGCCACCCCGAGCCACGTCAGCCT GAAAGTCCCAGGGAAGAGGCCACCCCGAGCCACGTCAGCCA < 41bp 1 0.118858150569543 1 0.0614896416664124 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236817455 chr2:236817475 nonsynonymous SNV 0.317 3 41 hm5C_associated_SNPs_32570 0 0 1 0 2 AGAP1 chr2:236817382 3'AG 236817382 Downstream 94bp
chr2 236817475 236817475 1 + T A SARC 236817455 + 236817435 236817475 41 GAAAGTCCCAGGGAAGAGGCCACCCCGAGCCACGTCAGCCT GAAAGTCCCAGGGAAGAGGCCACCCCGAGCCACGTCAGCCA < 41bp 1 0.118858150569543 1 0.0614896416664124 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236817455 chr2:236817475 nonsynonymous SNV 0.317 3 41 hm5C_associated_SNPs_32570 0 0 1 0 2 AGAP1 chr2:236817550 5'GT 236817550 Upstream 76bp
chr5 167627052 167627052 1 + G T SARC 167627037 + 167627017 167627057 41 CTGTCGAGGGGCATCTCTTCCAGAAGTCATTCCAGGCTTCT CTGTCGAGGGGCATCTCTTCCAGAAGTCATTCCAGTCTTCT < 41bp 1 0.531175191844907 1 0.517154455184937 experiment 0.937649616310186 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TENM2 ENSG00000145934 CDS Human protein_coding chr5:167627037 chr5:167627052 nonsynonymous SNV 1.000 5 36 hm5C_associated_SNPs_32571 0 0 0 0 1 TENM2 chr5:167627136 5'GT 167627136 Upstream 85bp
chr16 3712046 3712046 1 - C T SARC 3712045 - 3712025 3712065 41 CCTGCGCATGCAGCAGCTGGCCAAGACCCAGGAGGAGCGCG CCTGCGCATGCAGCAGCTGACCAAGACCCAGGAGGAGCGCG < 41bp 1 0.312466713658543 1 0.13383287191391 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712045 chr16:3712046 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_32572 0 0 1 0 2 TRAP1 chr16:3711988 5'GT 3711988 Upstream 59bp
chr16 3712046 3712046 1 - C T SARC 3712045 - 3712025 3712065 41 CCTGCGCATGCAGCAGCTGGCCAAGACCCAGGAGGAGCGCG CCTGCGCATGCAGCAGCTGACCAAGACCCAGGAGGAGCGCG < 41bp 1 0.312466713658543 1 0.13383287191391 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712045 chr16:3712046 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_32572 0 0 1 0 2 TRAP1 chr16:3712133 3'AG 3712133 Downstream 88bp
chr16 3712046 3712046 1 - C T SARC 3712049 - 3712029 3712069 41 ACTTCCTGCGCATGCAGCAGCTGGCCAAGACCCAGGAGGAG ACTTCCTGCGCATGCAGCAGCTGACCAAGACCCAGGAGGAG < 41bp 1 0.288057358585044 1 0.566983222961426 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712049 chr16:3712046 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_32573 0 0 1 0 2 TRAP1 chr16:3711988 5'GT 3711988 Upstream 59bp
chr16 3712046 3712046 1 - C T SARC 3712049 - 3712029 3712069 41 ACTTCCTGCGCATGCAGCAGCTGGCCAAGACCCAGGAGGAG ACTTCCTGCGCATGCAGCAGCTGACCAAGACCCAGGAGGAG < 41bp 1 0.288057358585044 1 0.566983222961426 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712049 chr16:3712046 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_32573 0 0 1 0 2 TRAP1 chr16:3712133 3'AG 3712133 Downstream 88bp
chr16 3712046 3712046 1 - C T SARC 3712061 - 3712041 3712081 41 GGGCTGCCCGCCACTTCCTGCGCATGCAGCAGCTGGCCAAG GGGCTGCCCGCCACTTCCTGCGCATGCAGCAGCTGACCAAG < 41bp 1 0.52088434256696 1 0.132582157850266 experiment 0.958231314866081 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712061 chr16:3712046 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_32574 0 0 1 0 2 TRAP1 chr16:3711988 5'GT 3711988 Upstream 59bp
chr16 3712046 3712046 1 - C T SARC 3712061 - 3712041 3712081 41 GGGCTGCCCGCCACTTCCTGCGCATGCAGCAGCTGGCCAAG GGGCTGCCCGCCACTTCCTGCGCATGCAGCAGCTGACCAAG < 41bp 1 0.52088434256696 1 0.132582157850266 experiment 0.958231314866081 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712061 chr16:3712046 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_32574 0 0 1 0 2 TRAP1 chr16:3712133 3'AG 3712133 Downstream 88bp
chr17 79418811 79418811 1 + C T SARC 79418808 + 79418788 79418828 41 CACTGCCCCAGCGCAGCCGCCCACAGCCAACCCCTGCAGCG CACTGCCCCAGCGCAGCCGCCCATAGCCAACCCCTGCAGCG < 41bp 1 0.0782903352812453 1 0.0551517903804779 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BAHCC1 ENSG00000171282 CDS Human other chr17:79418808 chr17:79418811 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_32575 0 0 1 0 1 BAHCC1 chr17:79418896 5'GT 79418896 Upstream 86bp
chr19 10561315 10561315 1 + G T SARC 10561299 + 10561279 10561319 41 GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAATGCCA < 41bp 1 0.0323530453777607 1 0.100975424051285 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561299 chr19:10561315 nonsynonymous SNV 0.999 2 37 hm5C_associated_SNPs_32578 0 0 0 0 2 PDE4A chr19:10561279 3'AG 10561279 Downstream 37bp
chr19 10561315 10561315 1 + G T SARC 10561299 + 10561279 10561319 41 GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAATGCCA < 41bp 1 0.0323530453777607 1 0.100975424051285 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561299 chr19:10561315 nonsynonymous SNV 0.999 2 37 hm5C_associated_SNPs_32578 0 0 0 0 2 PDE4A chr19:10561328 5'GT 10561328 Upstream 14bp
chr5 132400701 132400701 1 + G A SARC 132400719 + 132400699 132400739 41 TCGTTCAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC TCATTCAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC < 41bp 1 0.477196698306158 1 0.426067739725113 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132400719 chr5:132400701 nonsynonymous SNV 1.000 2 3 hm5C_associated_SNPs_32579 0 0 1 0 2 HSPA4 chr5:132400672 3'AG 132400672 Downstream 30bp
chr5 132400701 132400701 1 + G A SARC 132400719 + 132400699 132400739 41 TCGTTCAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC TCATTCAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC < 41bp 1 0.477196698306158 1 0.426067739725113 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132400719 chr5:132400701 nonsynonymous SNV 1.000 2 3 hm5C_associated_SNPs_32579 0 0 1 0 2 HSPA4 chr5:132400729 5'GT 132400729 Upstream 29bp
chr1 145761266 145761266 1 + T C SARC 145761280 + 145761260 145761300 41 CTTCTCTGGAAGTCTCAAGTCCACCAGATACTACAGAGGAA CTTCTCCGGAAGTCTCAAGTCCACCAGATACTACAGAGGAA < 41bp 1 0.0686379314747854 1 0.134644657373428 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDZK1 ENSG00000174827 CDS Human protein_coding chr1:145761280 chr1:145761266 nonsynonymous SNV . 0 7 hm5C_associated_SNPs_32580 0 0 1 0 1 PDZK1 chr1:145761178 3'AG 145761178 Downstream 89bp
chr16 1545430 1545430 1 + A T SARC 1545447 + 1545427 1545467 41 CGCAGTGTCGGCAGCAGACGCAGCCCGGCTTCATCCTGCTC CGCTGTGTCGGCAGCAGACGCAGCCCGGCTTCATCCTGCTC < 41bp 1 0.464974180487139 1 0.145891696214676 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1545447 chr16:1545430 nonsynonymous SNV 0.058 1 4 hm5C_associated_SNPs_32581 0 0 0 0 1 TELO2 chr16:1545347 3'AG 1545347 Downstream 84bp
chr1 39926399 39926399 1 + G T SARC 39926397 + 39926377 39926417 41 CTCGAGTGATGGATTTCTTCCGGCGCATTGATAAGGACCAG CTCGAGTGATGGATTTCTTCCGTCGCATTGATAAGGACCAG < 41bp 1 0.108755352879679 1 0.690378069877625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39926397 chr1:39926399 synonymous SNV . 0 23 hm5C_associated_SNPs_32585 0 0 1 0 2 MACF1 chr1:39926304 3'AG 39926304 Downstream 96bp
chr1 39926399 39926399 1 + G T SARC 39926397 + 39926377 39926417 41 CTCGAGTGATGGATTTCTTCCGGCGCATTGATAAGGACCAG CTCGAGTGATGGATTTCTTCCGTCGCATTGATAAGGACCAG < 41bp 1 0.108755352879679 1 0.690378069877625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39926397 chr1:39926399 synonymous SNV . 0 23 hm5C_associated_SNPs_32585 0 0 1 0 2 MACF1 chr1:39926466 5'GT 39926466 Upstream 68bp
chr1 46871975 46871975 1 + G T SARC 46871992 + 46871972 46872012 41 CGAGCCCTGCTGTGTGAGGACATGTTCCGCTTGGACCCCAC CGATCCCTGCTGTGTGAGGACATGTTCCGCTTGGACCCCAC < 41bp 1 0.395288903204995 1 0.0709720253944397 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAH ENSG00000117480 CDS Human protein_coding chr1:46871992 chr1:46871975 nonsynonymous SNV 0.915 1 4 hm5C_associated_SNPs_32586 0 0 0 0 2 FAAH chr1:46871916 3'AG 46871916 Downstream 60bp
chr1 46871975 46871975 1 + G T SARC 46871992 + 46871972 46872012 41 CGAGCCCTGCTGTGTGAGGACATGTTCCGCTTGGACCCCAC CGATCCCTGCTGTGTGAGGACATGTTCCGCTTGGACCCCAC < 41bp 1 0.395288903204995 1 0.0709720253944397 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAH ENSG00000117480 CDS Human protein_coding chr1:46871992 chr1:46871975 nonsynonymous SNV 0.915 1 4 hm5C_associated_SNPs_32586 0 0 0 0 2 FAAH chr1:46872040 5'GT 46872040 Upstream 66bp
chr1 150280547 150280547 1 + G T SARC 150280549 + 150280529 150280569 41 ATTATGAGAAGCCATGCCGCCGGCGACAGAGGGAAAGCTAT ATTATGAGAAGCCATGCCTCCGGCGACAGAGGGAAAGCTAT < 41bp 1 0.727158063942393 1 0.850033760070801 experiment 0.545683872115214 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPS21 ENSG00000187145 CDS Human other chr1:150280549 chr1:150280547 nonsynonymous SNV 0.691 0 19 hm5C_associated_SNPs_32587 0 0 1 0 1 MRPS21 chr1:150280482 3'AG 150280482 Downstream 66bp
chr2 10925152 10925152 1 - G T SARC 10925150 - 10925130 10925170 41 CATTTTTCCCTAAGGGAGCTCTCTTTTGGGCGTGGCTCCAC CATTTTTCCCTAAGGGAGATCTCTTTTGGGCGTGGCTCCAC < 41bp 1 0.274277981703178 1 0.40240278840065 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDIA6 ENSG00000143870 CDS Human protein_coding chr2:10925150 chr2:10925152 nonsynonymous SNV 0.735 3 19 hm5C_associated_SNPs_32590 0 0 1 0 2 PDIA6 chr2:10925060 5'GT 10925060 Upstream 93bp
chr2 10925152 10925152 1 - G T SARC 10925150 - 10925130 10925170 41 CATTTTTCCCTAAGGGAGCTCTCTTTTGGGCGTGGCTCCAC CATTTTTCCCTAAGGGAGATCTCTTTTGGGCGTGGCTCCAC < 41bp 1 0.274277981703178 1 0.40240278840065 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDIA6 ENSG00000143870 CDS Human protein_coding chr2:10925150 chr2:10925152 nonsynonymous SNV 0.735 3 19 hm5C_associated_SNPs_32590 0 0 1 0 2 PDIA6 chr2:10925156 3'AG 10925156 Downstream 5bp
chr2 60987381 60987381 1 + G T SARC 60987390 + 60987370 60987410 41 AATTAATTGACGCCATGAAACCATTTGGAGTGTTTGAAGAT AATTAATTGACTCCATGAAACCATTTGGAGTGTTTGAAGAT < 41bp 1 0.0620679993638661 1 0.0518468618392944 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLG ENSG00000115421 CDS Human protein_coding chr2:60987390 chr2:60987381 nonsynonymous SNV 0.997 1 12 hm5C_associated_SNPs_32591 0 0 1 0 1 PAPOLG chr2:60987430 5'GT 60987430 Upstream 50bp
chr2 85770884 85770884 1 + C A SARC 85770875 + 85770855 85770895 41 ACAGCTTCCCATGGGAAGTGCCCAAAAAGCTTAAATATTGA ACAGCTTCCCATGGGAAGTGCCCAAAAAGATTAAATATTGA < 41bp 1 0.172501752857182 1 0.195756584405899 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAT2A ENSG00000168906 CDS Human protein_coding chr2:85770875 chr2:85770884 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_32592 0 0 1 0 1 MAT2A chr2:85770793 3'AG 85770793 Downstream 92bp
chr2 204078296 204078296 1 + G T SARC 204078310 + 204078290 204078330 41 GTTTGTGTCACCAAAGAATACAGCCATATTCTTGTAGGTTT GTTTGTTTCACCAAAGAATACAGCCATATTCTTGTAGGTTT < 41bp 1 0.233137169437171 1 0.0738774836063385 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204078310 chr2:204078296 nonsynonymous SNV 0.977 3 7 hm5C_associated_SNPs_32593 0 0 0 0 2 NBEAL1 chr2:204078241 3'AG 204078241 Downstream 56bp
chr2 204078296 204078296 1 + G T SARC 204078310 + 204078290 204078330 41 GTTTGTGTCACCAAAGAATACAGCCATATTCTTGTAGGTTT GTTTGTTTCACCAAAGAATACAGCCATATTCTTGTAGGTTT < 41bp 1 0.233137169437171 1 0.0738774836063385 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204078310 chr2:204078296 nonsynonymous SNV 0.977 3 7 hm5C_associated_SNPs_32593 0 0 0 0 2 NBEAL1 chr2:204078376 5'GT 204078376 Upstream 81bp
chr3 169953108 169953108 1 + G T SARC 169953106 + 169953086 169953126 41 TGTGTTCTTTTGACAACGAACAGCTCTTCACCATGAAATGG TGTGTTCTTTTGACAACGAACATCTCTTCACCATGAAATGG < 41bp 1 0.181563875728564 1 0.0524255633354187 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:169953106 chr3:169953108 nonsynonymous SNV 0.756 1 23 hm5C_associated_SNPs_32594 0 0 1 0 2 PRKCI chr3:169953018 3'AG 169953018 Downstream 91bp
chr3 169953108 169953108 1 + G T SARC 169953106 + 169953086 169953126 41 TGTGTTCTTTTGACAACGAACAGCTCTTCACCATGAAATGG TGTGTTCTTTTGACAACGAACATCTCTTCACCATGAAATGG < 41bp 1 0.181563875728564 1 0.0524255633354187 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:169953106 chr3:169953108 nonsynonymous SNV 0.756 1 23 hm5C_associated_SNPs_32594 0 0 1 0 2 PRKCI chr3:169953139 5'GT 169953139 Upstream 32bp
chr5 7885851 7885851 1 + G T SARC 7885832 + 7885812 7885852 41 AGAATACAGACTTTTCCTATCAGCCTGGAGATGCCTTCAGC AGAATACAGACTTTTCCTATCAGCCTGGAGATGCCTTCATC < 41bp 1 0.432658379811458 1 0.192095011472702 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885832 chr5:7885851 nonsynonymous SNV 0.894 1 40 hm5C_associated_SNPs_32595 0 0 1 0 1 MTRR chr5:7885814 3'AG 7885814 Downstream 38bp
chr5 7885851 7885851 1 + G T SARC 7885835 + 7885815 7885855 41 ATACAGACTTTTCCTATCAGCCTGGAGATGCCTTCAGCGTG ATACAGACTTTTCCTATCAGCCTGGAGATGCCTTCATCGTG < 41bp 1 0.219253747365502 1 0.200909823179245 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885835 chr5:7885851 nonsynonymous SNV 0.894 1 37 hm5C_associated_SNPs_32596 0 0 1 0 1 MTRR chr5:7885814 3'AG 7885814 Downstream 38bp
chr5 7885851 7885851 1 + G T SARC 7885852 + 7885832 7885872 41 CAGCCTGGAGATGCCTTCAGCGTGATCTGCCCTAACAGTGA CAGCCTGGAGATGCCTTCATCGTGATCTGCCCTAACAGTGA < 41bp 1 0.790210249805641 1 0.549559056758881 experiment 0.419579500388719 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885852 chr5:7885851 nonsynonymous SNV 0.894 1 20 hm5C_associated_SNPs_32597 0 0 1 0 1 MTRR chr5:7885814 3'AG 7885814 Downstream 38bp
chr5 7885851 7885851 1 + G T SARC 7885861 + 7885841 7885881 41 GATGCCTTCAGCGTGATCTGCCCTAACAGTGATTCTGAGGT GATGCCTTCATCGTGATCTGCCCTAACAGTGATTCTGAGGT < 41bp 1 0.232597181017691 1 0.0593677163124084 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885861 chr5:7885851 nonsynonymous SNV 0.894 1 11 hm5C_associated_SNPs_32598 0 0 1 0 1 MTRR chr5:7885814 3'AG 7885814 Downstream 38bp
chr5 7885851 7885851 1 + G T SARC 7885862 + 7885842 7885882 41 ATGCCTTCAGCGTGATCTGCCCTAACAGTGATTCTGAGGTA ATGCCTTCATCGTGATCTGCCCTAACAGTGATTCTGAGGTA < 41bp 1 0.201536167684009 1 0.0889912843704224 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885862 chr5:7885851 nonsynonymous SNV 0.894 1 10 hm5C_associated_SNPs_32599 0 0 1 0 1 MTRR chr5:7885814 3'AG 7885814 Downstream 38bp
chr5 7885851 7885851 1 + G T SARC 7885863 + 7885843 7885883 41 TGCCTTCAGCGTGATCTGCCCTAACAGTGATTCTGAGGTAC TGCCTTCATCGTGATCTGCCCTAACAGTGATTCTGAGGTAC < 41bp 1 0.252153593674194 1 0.109326422214508 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885863 chr5:7885851 nonsynonymous SNV 0.894 1 9 hm5C_associated_SNPs_32600 0 0 1 0 1 MTRR chr5:7885814 3'AG 7885814 Downstream 38bp
chr5 134099710 134099710 1 + G T SARC 134099691 + 134099671 134099711 41 GTAAACGTGGAGATGACAGACGGTCTAGAAGTAGAGATAGA GTAAACGTGGAGATGACAGACGGTCTAGAAGTAGAGATATA < 41bp 1 0.381656507614509 1 0.514952600002289 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DDX46 ENSG00000145833 CDS Human protein_coding chr5:134099691 chr5:134099710 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_32601 0 0 1 0 1 DDX46 chr5:134099782 5'GT 134099782 Upstream 73bp
chr5 139906578 139906578 1 + G T SARC 139906560 + 139906540 139906580 41 CTTGTCAACCAGCTACAAGACAGTGTCATTGCCATTAAGCT CTTGTCAACCAGCTACAAGACAGTGTCATTGCCATTAATCT < 41bp 1 0.179553744767993 1 0.115045964717865 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139906560 chr5:139906578 nonsynonymous SNV 0.997 1 39 hm5C_associated_SNPs_32602 0 0 1 0 2 ANKHD1;ANKHD1-EIF4EBP3 chr5:139906513 3'AG 139906513 Downstream 66bp
chr5 139906578 139906578 1 + G T SARC 139906560 + 139906540 139906580 41 CTTGTCAACCAGCTACAAGACAGTGTCATTGCCATTAAGCT CTTGTCAACCAGCTACAAGACAGTGTCATTGCCATTAATCT < 41bp 1 0.179553744767993 1 0.115045964717865 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139906560 chr5:139906578 nonsynonymous SNV 0.997 1 39 hm5C_associated_SNPs_32602 0 0 1 0 2 ANKHD1;ANKHD1-EIF4EBP3 chr5:139906659 5'GT 139906659 Upstream 82bp
chr5 169015487 169015487 1 + G T SARC 169015481 + 169015461 169015501 41 AAGAGGCTGAAGAAGAGCGACTAAAAGCTGCACAGTATGGT AAGAGGCTGAAGAAGAGCGACTAAAATCTGCACAGTATGGT < 41bp 1 0.457335886963328 1 0.187601447105408 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169015481 chr5:169015487 nonsynonymous SNV 0.712 1 27 hm5C_associated_SNPs_32603 0 0 1 0 3 SPDL1 chr5:169015398 3'AG 169015398 Downstream 90bp
chr5 169015487 169015487 1 + G T SARC 169015481 + 169015461 169015501 41 AAGAGGCTGAAGAAGAGCGACTAAAAGCTGCACAGTATGGT AAGAGGCTGAAGAAGAGCGACTAAAATCTGCACAGTATGGT < 41bp 1 0.457335886963328 1 0.187601447105408 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169015481 chr5:169015487 nonsynonymous SNV 0.712 1 27 hm5C_associated_SNPs_32603 0 0 1 0 3 SPDL1 chr5:169015494 5'GT 169015494 Upstream 8bp
chr5 169015487 169015487 1 + G T SARC 169015481 + 169015461 169015501 41 AAGAGGCTGAAGAAGAGCGACTAAAAGCTGCACAGTATGGT AAGAGGCTGAAGAAGAGCGACTAAAATCTGCACAGTATGGT < 41bp 1 0.457335886963328 1 0.187601447105408 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169015481 chr5:169015487 nonsynonymous SNV 0.712 1 27 hm5C_associated_SNPs_32603 0 0 1 0 3 SPDL1 chr5:169015579 5'GT 169015579 Upstream 93bp
chr6 137219369 137219369 1 + G T SARC 137219355 + 137219335 137219375 41 GAGTTTACTTGTGGTTTAGACTTCAGTCTTCAGAGCCCCAC GAGTTTACTTGTGGTTTAGACTTCAGTCTTCAGATCCCCAC < 41bp 1 0.641108310908588 1 0.180858075618744 experiment 0.717783378182823 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PEX7 ENSG00000112357 CDS Human protein_coding chr6:137219355 chr6:137219369 nonsynonymous SNV 0.996 2 35 hm5C_associated_SNPs_32604 0 0 0 0 2 PEX7 chr6:137219280 3'AG 137219280 Downstream 90bp
chr6 137219369 137219369 1 + G T SARC 137219355 + 137219335 137219375 41 GAGTTTACTTGTGGTTTAGACTTCAGTCTTCAGAGCCCCAC GAGTTTACTTGTGGTTTAGACTTCAGTCTTCAGATCCCCAC < 41bp 1 0.641108310908588 1 0.180858075618744 experiment 0.717783378182823 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PEX7 ENSG00000112357 CDS Human protein_coding chr6:137219355 chr6:137219369 nonsynonymous SNV 0.996 2 35 hm5C_associated_SNPs_32604 0 0 0 0 2 PEX7 chr6:137219379 5'GT 137219379 Upstream 11bp
chr6 168314953 168314953 1 + G T SARC 168314938 + 168314918 168314958 41 AGCAAGACCGAGACCTTAGTCGGATCACACTGGATGCTCAA AGCAAGACCGAGACCTTAGTCGGATCACACTGGATTCTCAA < 41bp 1 0.33081206782099 1 0.879453897476196 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168314938 chr6:168314953 nonsynonymous SNV 0.978 3 36 hm5C_associated_SNPs_32605 0 0 1 0 1 AFDN chr6:168314993 5'GT 168314993 Upstream 41bp
chr7 139094370 139094370 1 + G T SARC 139094351 + 139094331 139094371 41 AGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGA AGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGATA < 41bp 1 0.532453139785238 1 0.369998097419739 experiment 0.935093720429523 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094351 chr7:139094370 nonsynonymous SNV 0.981 4 40 hm5C_associated_SNPs_32606 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 62bp
chr7 139094370 139094370 1 + G T SARC 139094351 + 139094331 139094371 41 AGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGA AGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGATA < 41bp 1 0.532453139785238 1 0.369998097419739 experiment 0.935093720429523 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094351 chr7:139094370 nonsynonymous SNV 0.981 4 40 hm5C_associated_SNPs_32606 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 31bp
chr7 139094370 139094370 1 + G T SARC 139094357 + 139094337 139094377 41 GAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGAGAGAGA GAAACCAGGAACGGCTGAAACGAAGAGAAGAGATAGAGAGA < 41bp 1 0.647061734533577 1 0.666119039058685 experiment 0.705876530932845 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094357 chr7:139094370 nonsynonymous SNV 0.981 4 34 hm5C_associated_SNPs_32607 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 62bp
chr7 139094370 139094370 1 + G T SARC 139094357 + 139094337 139094377 41 GAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGAGAGAGA GAAACCAGGAACGGCTGAAACGAAGAGAAGAGATAGAGAGA < 41bp 1 0.647061734533577 1 0.666119039058685 experiment 0.705876530932845 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094357 chr7:139094370 nonsynonymous SNV 0.981 4 34 hm5C_associated_SNPs_32607 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 31bp
chr7 142458486 142458486 1 + C T SARC 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCT < 41bp 1 0.133569697577188 1 0.166608780622482 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458486 synonymous SNV . 0 41 hm5C_associated_SNPs_32608 1 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 81bp
chr7 142458486 142458486 1 + C T SARC 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCT < 41bp 1 0.133569697577188 1 0.166608780622482 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458486 synonymous SNV . 0 41 hm5C_associated_SNPs_32608 1 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 7bp
chr7 142458486 142458486 1 + C T SARC 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCT < 41bp 1 0.133569697577188 1 0.166608780622482 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458486 synonymous SNV . 0 41 hm5C_associated_SNPs_32608 1 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 80bp
chr7 142458486 142458486 1 + C T SARC 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAA < 41bp 1 0.116431970023122 1 0.135868728160858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458486 synonymous SNV . 0 37 hm5C_associated_SNPs_32609 1 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 81bp
chr7 142458486 142458486 1 + C T SARC 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAA < 41bp 1 0.116431970023122 1 0.135868728160858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458486 synonymous SNV . 0 37 hm5C_associated_SNPs_32609 1 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 7bp
chr7 142458486 142458486 1 + C T SARC 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAA < 41bp 1 0.116431970023122 1 0.135868728160858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458486 synonymous SNV . 0 37 hm5C_associated_SNPs_32609 1 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 80bp
chr7 142458486 142458486 1 + C T SARC 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAAT < 41bp 1 0.0903853908967509 1 0.115727484226227 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458486 synonymous SNV . 0 36 hm5C_associated_SNPs_32610 1 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 81bp
chr7 142458486 142458486 1 + C T SARC 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAAT < 41bp 1 0.0903853908967509 1 0.115727484226227 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458486 synonymous SNV . 0 36 hm5C_associated_SNPs_32610 1 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 7bp
chr7 142458486 142458486 1 + C T SARC 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAAT < 41bp 1 0.0903853908967509 1 0.115727484226227 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458486 synonymous SNV . 0 36 hm5C_associated_SNPs_32610 1 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 80bp
chr7 142458486 142458486 1 + C T SARC 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAATT < 41bp 1 0.0151666406224258 1 0.102131992578506 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458486 synonymous SNV . 0 35 hm5C_associated_SNPs_32611 1 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 81bp
chr7 142458486 142458486 1 + C T SARC 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAATT < 41bp 1 0.0151666406224258 1 0.102131992578506 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458486 synonymous SNV . 0 35 hm5C_associated_SNPs_32611 1 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 7bp
chr7 142458486 142458486 1 + C T SARC 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAATT < 41bp 1 0.0151666406224258 1 0.102131992578506 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458486 synonymous SNV . 0 35 hm5C_associated_SNPs_32611 1 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 80bp
chr7 142458486 142458486 1 + C T SARC 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAATTC < 41bp 1 0.146782996738929 1 0.0518117249011993 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458486 synonymous SNV . 0 34 hm5C_associated_SNPs_32612 1 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 81bp
chr7 142458486 142458486 1 + C T SARC 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAATTC < 41bp 1 0.146782996738929 1 0.0518117249011993 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458486 synonymous SNV . 0 34 hm5C_associated_SNPs_32612 1 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 7bp
chr7 142458486 142458486 1 + C T SARC 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAATTC < 41bp 1 0.146782996738929 1 0.0518117249011993 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458486 synonymous SNV . 0 34 hm5C_associated_SNPs_32612 1 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 80bp
chr7 142458486 142458486 1 + C T SARC 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAATTCTGG < 41bp 1 0.175416732437467 1 0.32041323184967 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458486 synonymous SNV . 0 31 hm5C_associated_SNPs_32613 1 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 81bp
chr7 142458486 142458486 1 + C T SARC 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAATTCTGG < 41bp 1 0.175416732437467 1 0.32041323184967 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458486 synonymous SNV . 0 31 hm5C_associated_SNPs_32613 1 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 7bp
chr7 142458486 142458486 1 + C T SARC 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAATTCTGG < 41bp 1 0.175416732437467 1 0.32041323184967 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458486 synonymous SNV . 0 31 hm5C_associated_SNPs_32613 1 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 80bp
chr7 142458486 142458486 1 + C T SARC 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAATTCTGGC < 41bp 1 0.575763456277683 1 0.877609670162201 experiment 0.848473087444634 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458486 synonymous SNV . 0 30 hm5C_associated_SNPs_32614 1 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 81bp
chr7 142458486 142458486 1 + C T SARC 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAATTCTGGC < 41bp 1 0.575763456277683 1 0.877609670162201 experiment 0.848473087444634 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458486 synonymous SNV . 0 30 hm5C_associated_SNPs_32614 1 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 7bp
chr7 142458486 142458486 1 + C T SARC 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAATTCTGGC < 41bp 1 0.575763456277683 1 0.877609670162201 experiment 0.848473087444634 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458486 synonymous SNV . 0 30 hm5C_associated_SNPs_32614 1 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 80bp
chr7 142458486 142458486 1 + C T SARC 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACCAGGTGTCCTTGAATTCTGGCTACCACT < 41bp 1 0.0361163816749074 1 0.0498900413513184 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458486 synonymous SNV . 0 23 hm5C_associated_SNPs_32615 1 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 81bp
chr7 142458486 142458486 1 + C T SARC 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACCAGGTGTCCTTGAATTCTGGCTACCACT < 41bp 1 0.0361163816749074 1 0.0498900413513184 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458486 synonymous SNV . 0 23 hm5C_associated_SNPs_32615 1 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 7bp
chr7 142458486 142458486 1 + C T SARC 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACCAGGTGTCCTTGAATTCTGGCTACCACT < 41bp 1 0.0361163816749074 1 0.0498900413513184 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458486 synonymous SNV . 0 23 hm5C_associated_SNPs_32615 1 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 80bp
chr7 142458486 142458486 1 + C T SARC 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACCAGGTGTCCTTGAATTCTGGCTACCACTT < 41bp 1 0.561195335159784 1 0.192632526159286 experiment 0.877609329680433 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458486 synonymous SNV . 0 22 hm5C_associated_SNPs_32616 1 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 81bp
chr7 142458486 142458486 1 + C T SARC 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACCAGGTGTCCTTGAATTCTGGCTACCACTT < 41bp 1 0.561195335159784 1 0.192632526159286 experiment 0.877609329680433 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458486 synonymous SNV . 0 22 hm5C_associated_SNPs_32616 1 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 7bp
chr7 142458486 142458486 1 + C T SARC 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACCAGGTGTCCTTGAATTCTGGCTACCACTT < 41bp 1 0.561195335159784 1 0.192632526159286 experiment 0.877609329680433 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458486 synonymous SNV . 0 22 hm5C_associated_SNPs_32616 1 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 80bp
chr7 142458486 142458486 1 + C T SARC 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG CTACCAGGTGTCCTTGAATTCTGGCTACCACTTCTGTGGTG < 41bp 1 0.777952590957567 1 0.783184111118317 experiment 0.444094818084867 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458486 synonymous SNV . 0 14 hm5C_associated_SNPs_32617 1 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 81bp
chr7 142458486 142458486 1 + C T SARC 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG CTACCAGGTGTCCTTGAATTCTGGCTACCACTTCTGTGGTG < 41bp 1 0.777952590957567 1 0.783184111118317 experiment 0.444094818084867 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458486 synonymous SNV . 0 14 hm5C_associated_SNPs_32617 1 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 7bp
chr7 142458486 142458486 1 + C T SARC 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG CTACCAGGTGTCCTTGAATTCTGGCTACCACTTCTGTGGTG < 41bp 1 0.777952590957567 1 0.783184111118317 experiment 0.444094818084867 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458486 synonymous SNV . 0 14 hm5C_associated_SNPs_32617 1 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 80bp
chr7 142458486 142458486 1 + C T SARC 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCTTGAATTCTGGCTACCACTTCTGTGGTGGCTC < 41bp 1 0.0710248166349725 1 0.0493484139442444 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458486 synonymous SNV . 0 10 hm5C_associated_SNPs_32618 1 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 81bp
chr7 142458486 142458486 1 + C T SARC 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCTTGAATTCTGGCTACCACTTCTGTGGTGGCTC < 41bp 1 0.0710248166349725 1 0.0493484139442444 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458486 synonymous SNV . 0 10 hm5C_associated_SNPs_32618 1 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 7bp
chr7 142458486 142458486 1 + C T SARC 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCTTGAATTCTGGCTACCACTTCTGTGGTGGCTC < 41bp 1 0.0710248166349725 1 0.0493484139442444 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458486 synonymous SNV . 0 10 hm5C_associated_SNPs_32618 1 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 80bp
chr7 142458486 142458486 1 + C T SARC 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCTTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT < 41bp 1 0.0633152660106615 1 0.0451627671718597 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458486 synonymous SNV . 0 7 hm5C_associated_SNPs_32619 1 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 81bp
chr7 142458486 142458486 1 + C T SARC 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCTTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT < 41bp 1 0.0633152660106615 1 0.0451627671718597 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458486 synonymous SNV . 0 7 hm5C_associated_SNPs_32619 1 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 7bp
chr7 142458486 142458486 1 + C T SARC 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCTTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT < 41bp 1 0.0633152660106615 1 0.0451627671718597 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458486 synonymous SNV . 0 7 hm5C_associated_SNPs_32619 1 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 80bp
chr7 142458486 142458486 1 + C T SARC 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCTTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC < 41bp 1 0.205723480932329 1 0.390007704496384 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458486 synonymous SNV . 0 6 hm5C_associated_SNPs_32620 1 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 81bp
chr7 142458486 142458486 1 + C T SARC 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCTTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC < 41bp 1 0.205723480932329 1 0.390007704496384 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458486 synonymous SNV . 0 6 hm5C_associated_SNPs_32620 1 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 7bp
chr7 142458486 142458486 1 + C T SARC 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCTTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC < 41bp 1 0.205723480932329 1 0.390007704496384 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458486 synonymous SNV . 0 6 hm5C_associated_SNPs_32620 1 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 80bp
chr7 142458486 142458486 1 + C T SARC 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCTTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT < 41bp 1 0.327383792856633 1 0.518207788467407 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458486 synonymous SNV . 0 4 hm5C_associated_SNPs_32621 1 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 81bp
chr7 142458486 142458486 1 + C T SARC 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCTTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT < 41bp 1 0.327383792856633 1 0.518207788467407 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458486 synonymous SNV . 0 4 hm5C_associated_SNPs_32621 1 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 7bp
chr7 142458486 142458486 1 + C T SARC 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCTTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT < 41bp 1 0.327383792856633 1 0.518207788467407 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458486 synonymous SNV . 0 4 hm5C_associated_SNPs_32621 1 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 80bp
chr7 142458486 142458486 1 + C T SARC 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA TTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA < 41bp 1 0.630160669295685 1 0.295745521783829 experiment 0.73967866140863 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458486 synonymous SNV . 0 1 hm5C_associated_SNPs_32622 1 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 81bp
chr7 142458486 142458486 1 + C T SARC 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA TTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA < 41bp 1 0.630160669295685 1 0.295745521783829 experiment 0.73967866140863 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458486 synonymous SNV . 0 1 hm5C_associated_SNPs_32622 1 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 7bp
chr7 142458486 142458486 1 + C T SARC 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA TTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA < 41bp 1 0.630160669295685 1 0.295745521783829 experiment 0.73967866140863 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458486 synonymous SNV . 0 1 hm5C_associated_SNPs_32622 1 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 80bp
chr8 21851913 21851913 1 + G T SARC 21851912 + 21851892 21851932 41 GTAAGAGACCTGAGAGGGATCGCTTTCGCTTTCAATGCCAA GTAAGAGACCTGAGAGGGATCTCTTTCGCTTTCAATGCCAA < 41bp 1 0.212974221587595 1 0.134415149688721 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21851912 chr8:21851913 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_32623 0 0 1 0 2 XPO7 chr8:21851874 3'AG 21851874 Downstream 40bp
chr8 21851913 21851913 1 + G T SARC 21851912 + 21851892 21851932 41 GTAAGAGACCTGAGAGGGATCGCTTTCGCTTTCAATGCCAA GTAAGAGACCTGAGAGGGATCTCTTTCGCTTTCAATGCCAA < 41bp 1 0.212974221587595 1 0.134415149688721 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21851912 chr8:21851913 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_32623 0 0 1 0 2 XPO7 chr8:21851962 5'GT 21851962 Upstream 50bp
chr8 26505239 26505239 1 + G T SARC 26505249 + 26505229 26505269 41 AGGCCGCATTGCTGTGGGATCCGATGCCGACCTGGTCATCT AGGCCGCATTTCTGTGGGATCCGATGCCGACCTGGTCATCT < 41bp 1 0.175808475509677 1 0.092258095741272 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26505249 chr8:26505239 nonsynonymous SNV 0.746 3 11 hm5C_associated_SNPs_32624 0 0 1 0 1 DPYSL2 chr8:26505146 3'AG 26505146 Downstream 94bp
chr8 48885506 48885506 1 + G T SARC 48885502 + 48885482 48885522 41 ACCTGGTCGCACTGTACTACCAGAGCGAGGAGCAGGCAGAG ACCTGGTCGCACTGTACTACCAGATCGAGGAGCAGGCAGAG < 41bp 1 0.560570136029255 1 0.325370132923126 experiment 0.87885972794149 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48885502 chr8:48885506 nonsynonymous SNV 0.940 2 25 hm5C_associated_SNPs_32625 0 0 1 0 1 MCM4 chr8:48885417 3'AG 48885417 Downstream 90bp
chr8 145138166 145138166 1 + G T SARC 145138162 + 145138142 145138182 41 TTTGCGGGCGGAGACCGTGCCCGGGCTTTTGCCCGGGACTT TTTGCGGGCGGAGACCGTGCCCGGTCTTTTGCCCGGGACTT < 41bp 1 0.490223418788333 1 0.296031981706619 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145138162 chr8:145138166 nonsynonymous SNV 0.016 0 25 hm5C_associated_SNPs_32626 0 0 1 0 1 GPAA1 chr8:145138206 5'GT 145138206 Upstream 41bp
chr8 145138166 145138166 1 + G T SARC 145138163 + 145138143 145138183 41 TTGCGGGCGGAGACCGTGCCCGGGCTTTTGCCCGGGACTTC TTGCGGGCGGAGACCGTGCCCGGTCTTTTGCCCGGGACTTC < 41bp 1 0.467188530690702 1 0.603871643543243 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145138163 chr8:145138166 nonsynonymous SNV 0.016 0 24 hm5C_associated_SNPs_32627 0 0 1 0 1 GPAA1 chr8:145138206 5'GT 145138206 Upstream 41bp
chr9 101778337 101778337 1 + G T SARC 101778357 + 101778337 101778377 41 GCCCTCCCCCTGATGGGCCACCGCTGCCCCTGCCCACAGTG TCCCTCCCCCTGATGGGCCACCGCTGCCCCTGCCCACAGTG < 41bp 1 0.13476659867554 1 0.0883722305297852 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101778357 chr9:101778337 nonsynonymous SNV 0.002 2 1 hm5C_associated_SNPs_32628 0 0 0 0 1 COL15A1 chr9:101778401 5'GT 101778401 Upstream 65bp
chr10 102716219 102716219 1 + G T SARC 102716213 + 102716193 102716233 41 ATTTGTTTTGCACAGAAACACTTTGTGCTACTCTGTGGGGC ATTTGTTTTGCACAGAAACACTTTGTTCTACTCTGTGGGGC < 41bp 1 0.142015420527989 1 0.107049852609634 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLF2 ENSG00000119906 CDS Human protein_coding chr10:102716213 chr10:102716219 synonymous SNV . 0 27 hm5C_associated_SNPs_32629 0 0 1 0 2 SLF2 chr10:102716208 3'AG 102716208 Downstream 12bp
chr10 102716219 102716219 1 + G T SARC 102716213 + 102716193 102716233 41 ATTTGTTTTGCACAGAAACACTTTGTGCTACTCTGTGGGGC ATTTGTTTTGCACAGAAACACTTTGTTCTACTCTGTGGGGC < 41bp 1 0.142015420527989 1 0.107049852609634 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLF2 ENSG00000119906 CDS Human protein_coding chr10:102716213 chr10:102716219 synonymous SNV . 0 27 hm5C_associated_SNPs_32629 0 0 1 0 2 SLF2 chr10:102716294 5'GT 102716294 Upstream 76bp
chr10 103285835 103285835 1 + G T SARC 103285833 + 103285813 103285853 41 GGATGCCAAATCACTATGTGCTGCTGAACTTGTGTGCAAGG GGATGCCAAATCACTATGTGCTTCTGAACTTGTGTGCAAGG < 41bp 1 0.08719487831122 1 0.0503793060779572 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BTRC ENSG00000166167 CDS Human protein_coding chr10:103285833 chr10:103285835 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_32630 0 0 1 0 1 BTRC chr10:103285770 3'AG 103285770 Downstream 66bp
chr11 6962806 6962806 1 + G T SARC 6962809 + 6962789 6962829 41 TCATCTTCCTCAGATATGCCCTGCAAGGACTCTGCCCTGCA TCATCTTCCTCAGATATTCCCTGCAAGGACTCTGCCCTGCA < 41bp 1 0.79299487459691 1 0.649266481399536 experiment 0.41401025080618 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF215 ENSG00000149054 CDS Human protein_coding chr11:6962809 chr11:6962806 nonsynonymous SNV 0.004 0 18 hm5C_associated_SNPs_32631 0 0 1 0 2 ZNF215 chr11:6962802 3'AG 6962802 Downstream 5bp
chr11 6962806 6962806 1 + G T SARC 6962809 + 6962789 6962829 41 TCATCTTCCTCAGATATGCCCTGCAAGGACTCTGCCCTGCA TCATCTTCCTCAGATATTCCCTGCAAGGACTCTGCCCTGCA < 41bp 1 0.79299487459691 1 0.649266481399536 experiment 0.41401025080618 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF215 ENSG00000149054 CDS Human protein_coding chr11:6962809 chr11:6962806 nonsynonymous SNV 0.004 0 18 hm5C_associated_SNPs_32631 0 0 1 0 2 ZNF215 chr11:6962884 5'GT 6962884 Upstream 79bp
chr11 61631185 61631185 1 + G T SARC 61631203 + 61631183 61631223 41 CAGCCACCTGCAACGTGGAGCAGTCCTTCTTCAACGACTGG CATCCACCTGCAACGTGGAGCAGTCCTTCTTCAACGACTGG < 41bp 1 0.0343439893107208 1 0.272130966186523 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61631203 chr11:61631185 nonsynonymous SNV 0.820 1 3 hm5C_associated_SNPs_32633 0 0 1 0 2 FADS2 chr11:61631179 3'AG 61631179 Downstream 7bp
chr11 61631185 61631185 1 + G T SARC 61631203 + 61631183 61631223 41 CAGCCACCTGCAACGTGGAGCAGTCCTTCTTCAACGACTGG CATCCACCTGCAACGTGGAGCAGTCCTTCTTCAACGACTGG < 41bp 1 0.0343439893107208 1 0.272130966186523 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61631203 chr11:61631185 nonsynonymous SNV 0.820 1 3 hm5C_associated_SNPs_32633 0 0 1 0 2 FADS2 chr11:61631258 5'GT 61631258 Upstream 74bp
chr11 64879504 64879504 1 + G T SARC 64879492 + 64879472 64879512 41 CGGCGGAGCGGAGACCATGGCCCCCACTCAGGGCCCCCGGG CGGCGGAGCGGAGACCATGGCCCCCACTCAGGTCCCCCGGG < 41bp 1 0.160699368597465 1 0.30298638343811 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TM7SF2 ENSG00000149809 CDS Human protein_coding chr11:64879492 chr11:64879504 nonsynonymous SNV 0.004 0 33 hm5C_associated_SNPs_32634 0 0 0 0 1 TM7SF2 chr11:64879539 5'GT 64879539 Upstream 36bp
chr11 66627138 66627138 1 + G T SARC 66627122 + 66627102 66627142 41 CTGCAGGATTGTCCCAGCCTCCAGCCACCACTTCCTGCTGA CTGCAGGATTGTCCCAGCCTCCAGCCACCACTTCCTTCTGA < 41bp 1 0.187641876659028 1 0.378136456012726 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRFN4 ENSG00000173621 CDS Human protein_coding chr11:66627122 chr11:66627138 synonymous SNV . 0 37 hm5C_associated_SNPs_32635 0 0 1 0 1 LRFN4 chr11:66627108 3'AG 66627108 Downstream 31bp
chr11 66627138 66627138 1 + G T SARC 66627129 + 66627109 66627149 41 ATTGTCCCAGCCTCCAGCCACCACTTCCTGCTGAAGCACCT ATTGTCCCAGCCTCCAGCCACCACTTCCTTCTGAAGCACCT < 41bp 1 0.0625968849283024 1 0.0596520602703094 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRFN4 ENSG00000173621 CDS Human protein_coding chr11:66627129 chr11:66627138 synonymous SNV . 0 30 hm5C_associated_SNPs_32636 0 0 1 0 1 LRFN4 chr11:66627108 3'AG 66627108 Downstream 31bp
chr11 74915453 74915453 1 + G T SARC 74915455 + 74915435 74915475 41 CTTTCCCCAGGTTCATCGGCCTCCAGTTCTTCTTCAAAACA CTTTCCCCAGGTTCATCGTCCTCCAGTTCTTCTTCAAAACA < 41bp 1 0.4244378236857 1 0.311415076255798 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74915455 chr11:74915453 nonsynonymous SNV 0.986 4 19 hm5C_associated_SNPs_32637 0 0 0 0 1 SLCO2B1 chr11:74915445 3'AG 74915445 Downstream 9bp
chr11 76114925 76114925 1 + G T SARC 76114912 + 76114892 76114932 41 GGGCAGGAGAAGATGGATGTCACAGCTCAAGAAGCGAGAAC GGGCAGGAGAAGATGGATGTCACAGCTCAAGAATCGAGAAC < 41bp 1 0.542309697012298 1 0.224678069353104 experiment 0.915380605975405 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LOC100506127 ENSG00000179240 CDS Human protein_coding chr11:76114912 chr11:76114925 nonsynonymous SNV 0.012 0 34 hm5C_associated_SNPs_32638 0 0 0 0 1 LOC100506127 chr11:76114965 5'GT 76114965 Upstream 41bp
chr12 95888830 95888830 1 + G T SARC 95888833 + 95888813 95888853 41 CTCTCAATAATTGTGCTGCCCATTATACTCCCAATGCCGGT CTCTCAATAATTGTGCTTCCCATTATACTCCCAATGCCGGT < 41bp 1 0.399458325933214 1 0.104094535112381 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95888833 chr12:95888830 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_32639 0 0 1 0 2 METAP2 chr12:95888733 3'AG 95888733 Downstream 98bp
chr12 95888830 95888830 1 + G T SARC 95888833 + 95888813 95888853 41 CTCTCAATAATTGTGCTGCCCATTATACTCCCAATGCCGGT CTCTCAATAATTGTGCTTCCCATTATACTCCCAATGCCGGT < 41bp 1 0.399458325933214 1 0.104094535112381 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95888833 chr12:95888830 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_32639 0 0 1 0 2 METAP2 chr12:95888914 5'GT 95888914 Upstream 85bp
chr12 117426522 117426522 1 + G T SARC 117426534 + 117426514 117426554 41 CAGTAGCCGCTGCTGGAGATCTGATGTACCTGCTCAAAGCC CAGTAGCCTCTGCTGGAGATCTGATGTACCTGCTCAAAGCC < 41bp 1 0.444754374695665 1 0.192826420068741 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117426534 chr12:117426522 nonsynonymous SNV 0.885 0 9 hm5C_associated_SNPs_32640 0 0 0 0 1 FBXW8 chr12:117426468 3'AG 117426468 Downstream 55bp
chr14 104638944 104638944 1 + G T SARC 104638925 + 104638905 104638945 41 CCCCTAGGCCGAAGTCTGCTCGGGGACCGTGGCCGACGTGC CCCCTAGGCCGAAGTCTGCTCGGGGACCGTGGCCGACGTTC < 41bp 1 0.750335690230318 1 0.935822486877441 experiment 0.499328619539363 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104638925 chr14:104638944 synonymous SNV . 0 40 hm5C_associated_SNPs_32644 0 0 1 0 2 KIF26A chr14:104638912 3'AG 104638912 Downstream 33bp
chr14 104638944 104638944 1 + G T SARC 104638925 + 104638905 104638945 41 CCCCTAGGCCGAAGTCTGCTCGGGGACCGTGGCCGACGTGC CCCCTAGGCCGAAGTCTGCTCGGGGACCGTGGCCGACGTTC < 41bp 1 0.750335690230318 1 0.935822486877441 experiment 0.499328619539363 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104638925 chr14:104638944 synonymous SNV . 0 40 hm5C_associated_SNPs_32644 0 0 1 0 2 KIF26A chr14:104639005 5'GT 104639005 Upstream 62bp
chr15 22955228 22955228 1 + G T SARC 22955235 + 22955215 22955255 41 AAGGACCCCAAGAGCGGCTTCGACATAAAAGTACCACGCCG AAGGACCCCAAGATCGGCTTCGACATAAAAGTACCACGCCG < 41bp 1 0.749999654351137 1 0.596614897251129 experiment 0.500000691297726 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22955235 chr15:22955228 nonsynonymous SNV . 0 14 hm5C_associated_SNPs_32645 0 0 1 0 1 CYFIP1 chr15:22955280 5'GT 22955280 Upstream 53bp
chr15 89849342 89849342 1 + G T SARC 89849336 + 89849316 89849356 41 CATTTTTCCACGAGCTGGTGCAGACAGCTCTGCCATCAGGC CATTTTTCCACGAGCTGGTGCAGACATCTCTGCCATCAGGC < 41bp 1 0.131389344344446 1 0.357886910438538 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FANCI ENSG00000140525 CDS Human protein_coding chr15:89849336 chr15:89849342 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_32646 0 0 1 0 1 FANCI chr15:89849425 5'GT 89849425 Upstream 84bp
chr17 54912550 54912550 1 + G T SARC 54912549 + 54912529 54912569 41 CACCACTGGATCCGGGGCAACGTGCCCCTGTGCAGTTACTG CACCACTGGATCCGGGGCAACTTGCCCCTGTGCAGTTACTG < 41bp 1 0.25560398093076 1 0.0718756318092346 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKE ENSG00000153933 CDS Human protein_coding chr17:54912549 chr17:54912550 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_32649 0 0 1 0 1 DGKE chr17:54912620 5'GT 54912620 Upstream 71bp
chr17 73567052 73567052 1 + G T SARC 73567066 + 73567046 73567086 41 GCCAAGGCTGAGCGGCCAGGCCTCCAGAACATGGAGCTGGC GCCAAGTCTGAGCGGCCAGGCCTCCAGAACATGGAGCTGGC < 41bp 1 0.0702349503765326 1 0.396340906620026 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73567066 chr17:73567052 nonsynonymous SNV 0.011 0 7 hm5C_associated_SNPs_32650 0 0 1 0 1 LLGL2 chr17:73567031 3'AG 73567031 Downstream 22bp
chr17 78079630 78079630 1 + G T SARC 78079642 + 78079622 78079662 41 ACTCTACAGCGTGGAGTTCTCCGAGGAGCCCTTCGGGGTGA ACTCTACATCGTGGAGTTCTCCGAGGAGCCCTTCGGGGTGA < 41bp 1 0.771285731409565 1 0.913483023643494 experiment 0.45742853718087 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GAA ENSG00000171298 CDS Human protein_coding chr17:78079642 chr17:78079630 nonsynonymous SNV 0.951 1 9 hm5C_associated_SNPs_32651 0 0 1 0 2 GAA chr17:78079548 3'AG 78079548 Downstream 83bp
chr17 78079630 78079630 1 + G T SARC 78079642 + 78079622 78079662 41 ACTCTACAGCGTGGAGTTCTCCGAGGAGCCCTTCGGGGTGA ACTCTACATCGTGGAGTTCTCCGAGGAGCCCTTCGGGGTGA < 41bp 1 0.771285731409565 1 0.913483023643494 experiment 0.45742853718087 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GAA ENSG00000171298 CDS Human protein_coding chr17:78079642 chr17:78079630 nonsynonymous SNV 0.951 1 9 hm5C_associated_SNPs_32651 0 0 1 0 2 GAA chr17:78079693 5'GT 78079693 Upstream 64bp
chr17 80426696 80426696 1 + G T SARC 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTTC < 41bp 1 0.53209412944471 1 0.43389105796814 experiment 0.935811741110579 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426696 nonsynonymous SNV 0.996 3 40 hm5C_associated_SNPs_32652 0 0 1 11 2 NARF chr17:80426640 3'AG 80426640 Downstream 57bp
chr17 80426696 80426696 1 + G T SARC 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTTC < 41bp 1 0.53209412944471 1 0.43389105796814 experiment 0.935811741110579 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426696 nonsynonymous SNV 0.996 3 40 hm5C_associated_SNPs_32652 0 0 1 11 2 NARF chr17:80426772 5'GT 80426772 Upstream 77bp
chr19 4222720 4222720 1 + G T SARC 4222718 + 4222698 4222738 41 TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCGCCACC TTAAGGAAGCCTTGAAGGAGCATCCGGCCGCCCTCGCCACC < 41bp 1 0.0953805942417203 1 0.0817050039768219 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4222718 chr19:4222720 nonsynonymous SNV 0.331 3 23 hm5C_associated_SNPs_32653 0 0 0 0 2 ANKRD24 chr19:4222667 3'AG 4222667 Downstream 54bp
chr19 4222720 4222720 1 + G T SARC 4222718 + 4222698 4222738 41 TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCGCCACC TTAAGGAAGCCTTGAAGGAGCATCCGGCCGCCCTCGCCACC < 41bp 1 0.0953805942417203 1 0.0817050039768219 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4222718 chr19:4222720 nonsynonymous SNV 0.331 3 23 hm5C_associated_SNPs_32653 0 0 0 0 2 ANKRD24 chr19:4222792 5'GT 4222792 Upstream 73bp
chr19 10941695 10941695 1 + G T SARC 10941683 + 10941663 10941703 41 CCCTGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCG CCCTGCTGCGCCCAGCCGGCCCACCATTATCCTCCCAGCCG < 41bp 1 0.0705428488409982 1 0.0330395102500916 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941683 chr19:10941695 nonsynonymous SNV 0.988 4 33 hm5C_associated_SNPs_32654 0 0 1 0 2 DNM2 chr19:10941654 3'AG 10941654 Downstream 42bp
chr19 10941695 10941695 1 + G T SARC 10941683 + 10941663 10941703 41 CCCTGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCG CCCTGCTGCGCCCAGCCGGCCCACCATTATCCTCCCAGCCG < 41bp 1 0.0705428488409982 1 0.0330395102500916 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941683 chr19:10941695 nonsynonymous SNV 0.988 4 33 hm5C_associated_SNPs_32654 0 0 1 0 2 DNM2 chr19:10941657 3'AG 10941657 Downstream 39bp
chr19 10941695 10941695 1 + G T SARC 10941684 + 10941664 10941704 41 CCTGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGA CCTGCTGCGCCCAGCCGGCCCACCATTATCCTCCCAGCCGA < 41bp 1 0.734912905873891 1 0.233752965927124 experiment 0.530174188252218 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941684 chr19:10941695 nonsynonymous SNV 0.988 4 32 hm5C_associated_SNPs_32655 0 0 1 0 2 DNM2 chr19:10941654 3'AG 10941654 Downstream 42bp
chr19 10941695 10941695 1 + G T SARC 10941684 + 10941664 10941704 41 CCTGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGA CCTGCTGCGCCCAGCCGGCCCACCATTATCCTCCCAGCCGA < 41bp 1 0.734912905873891 1 0.233752965927124 experiment 0.530174188252218 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941684 chr19:10941695 nonsynonymous SNV 0.988 4 32 hm5C_associated_SNPs_32655 0 0 1 0 2 DNM2 chr19:10941657 3'AG 10941657 Downstream 39bp
chr19 10941695 10941695 1 + G T SARC 10941686 + 10941666 10941706 41 TGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGC TGCTGCGCCCAGCCGGCCCACCATTATCCTCCCAGCCGAGC < 41bp 1 0.0494985293325003 1 0.0902315080165863 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941686 chr19:10941695 nonsynonymous SNV 0.988 4 30 hm5C_associated_SNPs_32656 0 0 1 0 2 DNM2 chr19:10941654 3'AG 10941654 Downstream 42bp
chr19 10941695 10941695 1 + G T SARC 10941686 + 10941666 10941706 41 TGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGC TGCTGCGCCCAGCCGGCCCACCATTATCCTCCCAGCCGAGC < 41bp 1 0.0494985293325003 1 0.0902315080165863 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941686 chr19:10941695 nonsynonymous SNV 0.988 4 30 hm5C_associated_SNPs_32656 0 0 1 0 2 DNM2 chr19:10941657 3'AG 10941657 Downstream 39bp
chr19 10941695 10941695 1 + G T SARC 10941687 + 10941667 10941707 41 GCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGCC GCTGCGCCCAGCCGGCCCACCATTATCCTCCCAGCCGAGCC < 41bp 1 0.233745378838239 1 0.0775275528430939 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941687 chr19:10941695 nonsynonymous SNV 0.988 4 29 hm5C_associated_SNPs_32657 0 0 1 0 2 DNM2 chr19:10941654 3'AG 10941654 Downstream 42bp
chr19 10941695 10941695 1 + G T SARC 10941687 + 10941667 10941707 41 GCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGCC GCTGCGCCCAGCCGGCCCACCATTATCCTCCCAGCCGAGCC < 41bp 1 0.233745378838239 1 0.0775275528430939 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941687 chr19:10941695 nonsynonymous SNV 0.988 4 29 hm5C_associated_SNPs_32657 0 0 1 0 2 DNM2 chr19:10941657 3'AG 10941657 Downstream 39bp
chr19 46026012 46026012 1 + G T SARC 46026006 + 46025986 46026026 41 CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGA CCTCAGGGGGGCCCACAGCCCCCAAATCTGAGAGTGGTCGA < 41bp 1 0.634668625909604 1 0.286887258291245 experiment 0.730662748180791 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026006 chr19:46026012 nonsynonymous SNV 0.669 0 27 hm5C_associated_SNPs_32662 0 0 1 0 3 VASP chr19:46025976 3'AG 46025976 Downstream 37bp
chr19 46026012 46026012 1 + G T SARC 46026006 + 46025986 46026026 41 CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGA CCTCAGGGGGGCCCACAGCCCCCAAATCTGAGAGTGGTCGA < 41bp 1 0.634668625909604 1 0.286887258291245 experiment 0.730662748180791 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026006 chr19:46026012 nonsynonymous SNV 0.669 0 27 hm5C_associated_SNPs_32662 0 0 1 0 3 VASP chr19:46025979 3'AG 46025979 Downstream 34bp
chr19 46026012 46026012 1 + G T SARC 46026006 + 46025986 46026026 41 CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGA CCTCAGGGGGGCCCACAGCCCCCAAATCTGAGAGTGGTCGA < 41bp 1 0.634668625909604 1 0.286887258291245 experiment 0.730662748180791 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026006 chr19:46026012 nonsynonymous SNV 0.669 0 27 hm5C_associated_SNPs_32662 0 0 1 0 3 VASP chr19:46026076 5'GT 46026076 Upstream 65bp
chr19 46026012 46026012 1 + G T SARC 46026007 + 46025987 46026027 41 CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAA CTCAGGGGGGCCCACAGCCCCCAAATCTGAGAGTGGTCGAA < 41bp 1 0.336942117089532 1 0.0930121839046478 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026007 chr19:46026012 nonsynonymous SNV 0.669 0 26 hm5C_associated_SNPs_32663 0 0 1 0 3 VASP chr19:46025976 3'AG 46025976 Downstream 37bp
chr19 46026012 46026012 1 + G T SARC 46026007 + 46025987 46026027 41 CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAA CTCAGGGGGGCCCACAGCCCCCAAATCTGAGAGTGGTCGAA < 41bp 1 0.336942117089532 1 0.0930121839046478 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026007 chr19:46026012 nonsynonymous SNV 0.669 0 26 hm5C_associated_SNPs_32663 0 0 1 0 3 VASP chr19:46025979 3'AG 46025979 Downstream 34bp
chr19 46026012 46026012 1 + G T SARC 46026007 + 46025987 46026027 41 CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAA CTCAGGGGGGCCCACAGCCCCCAAATCTGAGAGTGGTCGAA < 41bp 1 0.336942117089532 1 0.0930121839046478 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026007 chr19:46026012 nonsynonymous SNV 0.669 0 26 hm5C_associated_SNPs_32663 0 0 1 0 3 VASP chr19:46026076 5'GT 46026076 Upstream 65bp
chr19 46026012 46026012 1 + G T SARC 46026008 + 46025988 46026028 41 TCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAAG TCAGGGGGGCCCACAGCCCCCAAATCTGAGAGTGGTCGAAG < 41bp 1 0.32352187518494 1 0.35785111784935 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026008 chr19:46026012 nonsynonymous SNV 0.669 0 25 hm5C_associated_SNPs_32664 0 0 1 0 3 VASP chr19:46025976 3'AG 46025976 Downstream 37bp
chr19 46026012 46026012 1 + G T SARC 46026008 + 46025988 46026028 41 TCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAAG TCAGGGGGGCCCACAGCCCCCAAATCTGAGAGTGGTCGAAG < 41bp 1 0.32352187518494 1 0.35785111784935 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026008 chr19:46026012 nonsynonymous SNV 0.669 0 25 hm5C_associated_SNPs_32664 0 0 1 0 3 VASP chr19:46025979 3'AG 46025979 Downstream 34bp
chr19 46026012 46026012 1 + G T SARC 46026008 + 46025988 46026028 41 TCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAAG TCAGGGGGGCCCACAGCCCCCAAATCTGAGAGTGGTCGAAG < 41bp 1 0.32352187518494 1 0.35785111784935 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026008 chr19:46026012 nonsynonymous SNV 0.669 0 25 hm5C_associated_SNPs_32664 0 0 1 0 3 VASP chr19:46026076 5'GT 46026076 Upstream 65bp
chr19 49652930 49652930 1 + G T SARC 49652931 + 49652911 49652951 41 TCGTTCGGCTGCAGCGGGAGCCCTGGGCTCTCCGGGGCTCC TCGTTCGGCTGCAGCGGGATCCCTGGGCTCTCCGGGGCTCC < 41bp 1 0.190820350182187 1 0.102026283740997 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652931 chr19:49652930 nonsynonymous SNV 0.997 0 20 hm5C_associated_SNPs_32665 0 0 1 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 46bp
chr19 49652930 49652930 1 + G T SARC 49652932 + 49652912 49652952 41 CGTTCGGCTGCAGCGGGAGCCCTGGGCTCTCCGGGGCTCCC CGTTCGGCTGCAGCGGGATCCCTGGGCTCTCCGGGGCTCCC < 41bp 1 0.24431951993765 1 0.304368615150452 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652932 chr19:49652930 nonsynonymous SNV 0.997 0 19 hm5C_associated_SNPs_32666 0 0 1 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 46bp
chr19 49652930 49652930 1 + G T SARC 49652948 + 49652928 49652968 41 GAGCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAG GATCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAG < 41bp 1 0.0959392732199028 1 0.140617072582245 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652948 chr19:49652930 nonsynonymous SNV 0.997 0 3 hm5C_associated_SNPs_32667 0 0 1 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 46bp
chr19 49652930 49652930 1 + G T SARC 49652950 + 49652930 49652970 41 GCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCC TCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCC < 41bp 1 0.052243082278915 1 0.0465338528156281 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652950 chr19:49652930 nonsynonymous SNV 0.997 0 1 hm5C_associated_SNPs_32668 0 0 1 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 46bp
chr20 19937397 19937397 1 + G T SARC 19937385 + 19937365 19937405 41 CGGCTCCTCCACACCCACCCCATATGGCTGCAGCTGAGTCT CGGCTCCTCCACACCCACCCCATATGGCTGCATCTGAGTCT < 41bp 1 0.172551804340483 1 0.160535246133804 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIN2 ENSG00000132669 CDS Human protein_coding chr20:19937385 chr20:19937397 nonsynonymous SNV 0.998 4 33 hm5C_associated_SNPs_32669 0 0 0 0 1 RIN2 chr20:19937451 5'GT 19937451 Upstream 55bp
chr20 39978514 39978514 1 + G T SARC 39978516 + 39978496 39978536 41 GAGTCCCACATGCAGTGGGCCTGGGGGAGGCTGCCTAAGGT GAGTCCCACATGCAGTGGTCCTGGGGGAGGCTGCCTAAGGT < 41bp 1 0.684574918920317 1 0.693087577819824 experiment 0.630850162159366 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39978516 chr20:39978514 nonsynonymous SNV 1.000 0 19 hm5C_associated_SNPs_32670 0 0 1 0 1 LPIN3 chr20:39978534 5'GT 39978534 Upstream 21bp
chr22 39440166 39440166 1 + G T SARC 39440154 + 39440134 39440174 41 CCTTTGGCCAGTGCGCCCCACCACATGGGACAGCGCAGGTC CCTTTGGCCAGTGCGCCCCACCACATGGGACATCGCAGGTC < 41bp 1 0.410581970312874 1 0.180604875087738 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APOBEC3F ENSG00000128394 CDS Human protein_coding chr22:39440154 chr22:39440166 nonsynonymous SNV 0.007 0 33 hm5C_associated_SNPs_32671 0 0 0 0 1 APOBEC3F chr22:39440088 3'AG 39440088 Downstream 79bp
chr22 51133381 51133381 1 + G T SARC 51133361 + 51133341 51133381 41 GACCCTCGCTGAGAAGCCTCCCCCACCAGCTGCTGCTCCAG GACCCTCGCTGAGAAGCCTCCCCCACCAGCTGCTGCTCCAT < 41bp 1 0.170023284773438 1 0.118022710084915 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51133361 chr22:51133381 nonsynonymous SNV . 0 41 hm5C_associated_SNPs_32672 0 0 0 0 1 SHANK3 chr22:51133476 5'GT 51133476 Upstream 96bp
chr22 51133381 51133381 1 + G T SARC 51133362 + 51133342 51133382 41 ACCCTCGCTGAGAAGCCTCCCCCACCAGCTGCTGCTCCAGC ACCCTCGCTGAGAAGCCTCCCCCACCAGCTGCTGCTCCATC < 41bp 1 0.0379137626627282 1 0.0668432712554932 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51133362 chr22:51133381 nonsynonymous SNV . 0 40 hm5C_associated_SNPs_32673 0 0 0 0 1 SHANK3 chr22:51133476 5'GT 51133476 Upstream 96bp
chr22 51133381 51133381 1 + G T SARC 51133363 + 51133343 51133383 41 CCCTCGCTGAGAAGCCTCCCCCACCAGCTGCTGCTCCAGCG CCCTCGCTGAGAAGCCTCCCCCACCAGCTGCTGCTCCATCG < 41bp 1 0.0604669710408026 1 0.125077664852142 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51133363 chr22:51133381 nonsynonymous SNV . 0 39 hm5C_associated_SNPs_32674 0 0 0 0 1 SHANK3 chr22:51133476 5'GT 51133476 Upstream 96bp
chr22 51133381 51133381 1 + G T SARC 51133364 + 51133344 51133384 41 CCTCGCTGAGAAGCCTCCCCCACCAGCTGCTGCTCCAGCGG CCTCGCTGAGAAGCCTCCCCCACCAGCTGCTGCTCCATCGG < 41bp 1 0.730357388115396 1 0.829286456108093 experiment 0.539285223769208 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51133364 chr22:51133381 nonsynonymous SNV . 0 38 hm5C_associated_SNPs_32675 0 0 0 0 1 SHANK3 chr22:51133476 5'GT 51133476 Upstream 96bp
chrX 17705971 17705971 1 + G T SARC 17705955 + 17705935 17705975 41 CTTCCTCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGC CTTCCTCCCAGCCACAAGGCCACCCTGCGTGGAGGATCTGC < 41bp 1 0.328115429122729 1 0.0334930717945099 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NHS ENSG00000188158 CDS Human protein_coding chrX:17705955 chrX:17705971 nonsynonymous SNV 0.998 1 37 hm5C_associated_SNPs_32676 0 0 0 0 1 NHS chrX:17706014 5'GT 17706014 Upstream 44bp
chrX 17705971 17705971 1 + G T SARC 17705959 + 17705939 17705979 41 CTCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGCACCG CTCCCAGCCACAAGGCCACCCTGCGTGGAGGATCTGCACCG < 41bp 1 0.734305048291394 1 0.638741910457611 experiment 0.531389903417213 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NHS ENSG00000188158 CDS Human protein_coding chrX:17705959 chrX:17705971 nonsynonymous SNV 0.998 1 33 hm5C_associated_SNPs_32677 0 0 0 0 1 NHS chrX:17706014 5'GT 17706014 Upstream 44bp
chrX 103411577 103411577 1 + G T SARC 103411562 + 103411542 103411582 41 CCTCCTCGCGGGGTGGGCACCTGCCCGAGCGAGGAGCCGGG CCTCCTCGCGGGGTGGGCACCTGCCCGAGCGAGGATCCGGG < 41bp 1 0.780979777915049 1 0.294033050537109 experiment 0.438040444169902 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM199X ENSG00000123575 CDS Human protein_coding chrX:103411562 chrX:103411577 nonsynonymous SNV 0.984 1 36 hm5C_associated_SNPs_32678 0 0 1 0 1 FAM199X chrX:103411663 5'GT 103411663 Upstream 87bp
chrX 106046128 106046128 1 + G T SARC 106046129 + 106046109 106046149 41 TTCTGAAAAATGCGCTGAAGCTGTGGCTGATGGAAAGGTCC TTCTGAAAAATGCGCTGAATCTGTGGCTGATGGAAAGGTCC < 41bp 1 0.631041200626138 1 0.312725216150284 experiment 0.737917598747723 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TBC1D8B ENSG00000133138 CDS Human protein_coding chrX:106046129 chrX:106046128 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_32679 0 0 1 0 1 TBC1D8B chrX:106046213 5'GT 106046213 Upstream 86bp
chrX 107842029 107842029 1 + G T SARC 107842027 + 107842007 107842047 41 CCTATGGGTCCCCCTGGTTTCGGCCCTCCAGGCCCAGTAGG CCTATGGGTCCCCCTGGTTTCGTCCCTCCAGGCCCAGTAGG < 41bp 1 0.180603924684281 1 0.0939501821994781 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107842027 chrX:107842029 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_32680 0 0 1 0 1 COL4A5 chrX:107842100 5'GT 107842100 Upstream 72bp
chrX 153031713 153031713 1 + G T SARC 153031732 + 153031712 153031752 41 CGCGGCTGCCTGGCTCTTTCCCCCAGCTGCGGAGGGTTCCT CTCGGCTGCCTGGCTCTTTCCCCCAGCTGCGGAGGGTTCCT < 41bp 1 0.334310081496408 1 0.811307668685913 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PLXNB3 ENSG00000198753 CDS Human antisense chrX:153031732 chrX:153031713 synonymous SNV . 0 2 hm5C_associated_SNPs_32681 0 0 1 0 1 PLXNB3 chrX:153031614 3'AG 153031614 Downstream 100bp
chr1 89298797 89298797 1 + G T SARC 89298809 + 89298789 89298829 41 TGGGGCTAGCGAGAAAGATGCAGAGGATGTAAAAAAGCACC TGGGGCTATCGAGAAAGATGCAGAGGATGTAAAAAAGCACC < 41bp 1 0.503974746236145 1 0.753382086753845 experiment 0.99205050752771 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKN2 ENSG00000065243 CDS Human protein_coding chr1:89298809 chr1:89298797 nonsynonymous SNV 0.987 1 9 hm5C_associated_SNPs_32683 0 0 1 0 2 PKN2 chr1:89298760 3'AG 89298760 Downstream 38bp
chr1 89298797 89298797 1 + G T SARC 89298809 + 89298789 89298829 41 TGGGGCTAGCGAGAAAGATGCAGAGGATGTAAAAAAGCACC TGGGGCTATCGAGAAAGATGCAGAGGATGTAAAAAAGCACC < 41bp 1 0.503974746236145 1 0.753382086753845 experiment 0.99205050752771 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKN2 ENSG00000065243 CDS Human protein_coding chr1:89298809 chr1:89298797 nonsynonymous SNV 0.987 1 9 hm5C_associated_SNPs_32683 0 0 1 0 2 PKN2 chr1:89298840 5'GT 89298840 Upstream 44bp
chr1 150483634 150483634 1 + G T SARC 150483635 + 150483615 150483655 41 TATTCCCGCTGCTGCCACTGCCGCAGCCACACAAACCGCCT TATTCCCGCTGCTGCCACTTCCGCAGCCACACAAACCGCCT < 41bp 1 0.664871016171498 1 0.77140885591507 experiment 0.670257967657005 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ECM1 ENSG00000143369 CDS Human protein_coding chr1:150483635 chr1:150483634 nonsynonymous SNV 0.997 3 20 hm5C_associated_SNPs_32684 0 0 1 0 1 ECM1 chr1:150483674 5'GT 150483674 Upstream 41bp
chr2 32689585 32689585 1 + G T SARC 32689581 + 32689561 32689601 41 TTTACTTCTTTTGCAGAAAGCAAAGCTGGAAGCCAAGTTAC TTTACTTCTTTTGCAGAAAGCAAATCTGGAAGCCAAGTTAC < 41bp 1 0.0767645363073865 1 0.129403412342072 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32689581 chr2:32689585 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_32685 0 0 1 0 1 BIRC6 chr2:32689577 3'AG 32689577 Downstream 9bp
chr2 55191167 55191167 1 + G T SARC 55191153 + 55191133 55191173 41 CAAGGTGAGCTTGGGCCATGCGGCCAGGTGTGCAGCCTACA CAAGGTGAGCTTGGGCCATGCGGCCAGGTGTGCATCCTACA < 41bp 1 0.239343152793858 1 0.330692410469055 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EML6 ENSG00000214595 CDS Human protein_coding chr2:55191153 chr2:55191167 nonsynonymous SNV 0.994 1 35 hm5C_associated_SNPs_32686 0 0 0 0 1 EML6 chr2:55191122 3'AG 55191122 Downstream 46bp
chr3 14487264 14487264 1 + G T SARC 14487265 + 14487245 14487285 41 TTTATTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTT TTTATTTTCCTGTTTGGGATCGGCCTGCCTGTGTTTTTCTT < 41bp 1 0.304456362244892 1 0.397847712039948 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487265 chr3:14487264 nonsynonymous SNV 0.997 2 20 hm5C_associated_SNPs_32687 0 0 1 1 2 SLC6A6 chr3:14487225 3'AG 14487225 Downstream 40bp
chr3 14487264 14487264 1 + G T SARC 14487265 + 14487245 14487285 41 TTTATTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTT TTTATTTTCCTGTTTGGGATCGGCCTGCCTGTGTTTTTCTT < 41bp 1 0.304456362244892 1 0.397847712039948 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487265 chr3:14487264 nonsynonymous SNV 0.997 2 20 hm5C_associated_SNPs_32687 0 0 1 1 2 SLC6A6 chr3:14487359 5'GT 14487359 Upstream 96bp
chr3 14487264 14487264 1 + G T SARC 14487269 + 14487249 14487289 41 TTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTTGGAG TTTTCCTGTTTGGGATCGGCCTGCCTGTGTTTTTCTTGGAG < 41bp 1 0.299671422292956 1 0.188096910715103 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487269 chr3:14487264 nonsynonymous SNV 0.997 2 16 hm5C_associated_SNPs_32688 0 0 1 1 2 SLC6A6 chr3:14487225 3'AG 14487225 Downstream 40bp
chr3 14487264 14487264 1 + G T SARC 14487269 + 14487249 14487289 41 TTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTTGGAG TTTTCCTGTTTGGGATCGGCCTGCCTGTGTTTTTCTTGGAG < 41bp 1 0.299671422292956 1 0.188096910715103 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487269 chr3:14487264 nonsynonymous SNV 0.997 2 16 hm5C_associated_SNPs_32688 0 0 1 1 2 SLC6A6 chr3:14487359 5'GT 14487359 Upstream 96bp
chr4 48835484 48835484 1 + G T SARC 48835494 + 48835474 48835514 41 AATGATGAAAGCTTCTGGTTCAGATGTGAGTTCAATTTTCT AATGATGAAATCTTCTGGTTCAGATGTGAGTTCAATTTTCT < 41bp 1 0.309637640737934 1 0.304851770401001 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48835494 chr4:48835484 nonsynonymous SNV 0.993 3 11 hm5C_associated_SNPs_32689 0 0 1 0 2 OCIAD1 chr4:48835418 3'AG 48835418 Downstream 67bp
chr4 48835484 48835484 1 + G T SARC 48835494 + 48835474 48835514 41 AATGATGAAAGCTTCTGGTTCAGATGTGAGTTCAATTTTCT AATGATGAAATCTTCTGGTTCAGATGTGAGTTCAATTTTCT < 41bp 1 0.309637640737934 1 0.304851770401001 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48835494 chr4:48835484 nonsynonymous SNV 0.993 3 11 hm5C_associated_SNPs_32689 0 0 1 0 2 OCIAD1 chr4:48835498 5'GT 48835498 Upstream 15bp
chr5 177019607 177019607 1 + G T SARC 177019588 + 177019568 177019608 41 CCCTCAAGGAAACTACCGGACGCAGCTGTATGACAAGCAGC CCCTCAAGGAAACTACCGGACGCAGCTGTATGACAAGCATC < 41bp 1 0.595333726017429 1 0.203102797269821 experiment 0.809332547965143 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019588 chr5:177019607 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_32691 0 0 1 0 2 TMED9 chr5:177019576 3'AG 177019576 Downstream 32bp
chr5 177019607 177019607 1 + G T SARC 177019588 + 177019568 177019608 41 CCCTCAAGGAAACTACCGGACGCAGCTGTATGACAAGCAGC CCCTCAAGGAAACTACCGGACGCAGCTGTATGACAAGCATC < 41bp 1 0.595333726017429 1 0.203102797269821 experiment 0.809332547965143 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019588 chr5:177019607 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_32691 0 0 1 0 2 TMED9 chr5:177019676 5'GT 177019676 Upstream 70bp
chr5 177019607 177019607 1 + G T SARC 177019593 + 177019573 177019613 41 AAGGAAACTACCGGACGCAGCTGTATGACAAGCAGCGGGAG AAGGAAACTACCGGACGCAGCTGTATGACAAGCATCGGGAG < 41bp 1 0.744581016135538 1 0.658331453800201 experiment 0.510837967728925 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019593 chr5:177019607 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_32692 0 0 1 0 2 TMED9 chr5:177019576 3'AG 177019576 Downstream 32bp
chr5 177019607 177019607 1 + G T SARC 177019593 + 177019573 177019613 41 AAGGAAACTACCGGACGCAGCTGTATGACAAGCAGCGGGAG AAGGAAACTACCGGACGCAGCTGTATGACAAGCATCGGGAG < 41bp 1 0.744581016135538 1 0.658331453800201 experiment 0.510837967728925 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019593 chr5:177019607 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_32692 0 0 1 0 2 TMED9 chr5:177019676 5'GT 177019676 Upstream 70bp
chr5 177019607 177019607 1 + G T SARC 177019601 + 177019581 177019621 41 TACCGGACGCAGCTGTATGACAAGCAGCGGGAGGAGTACCA TACCGGACGCAGCTGTATGACAAGCATCGGGAGGAGTACCA < 41bp 1 0.61152749927808 1 0.419057607650757 experiment 0.77694500144384 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019601 chr5:177019607 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_32693 0 0 1 0 2 TMED9 chr5:177019576 3'AG 177019576 Downstream 32bp
chr5 177019607 177019607 1 + G T SARC 177019601 + 177019581 177019621 41 TACCGGACGCAGCTGTATGACAAGCAGCGGGAGGAGTACCA TACCGGACGCAGCTGTATGACAAGCATCGGGAGGAGTACCA < 41bp 1 0.61152749927808 1 0.419057607650757 experiment 0.77694500144384 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019601 chr5:177019607 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_32693 0 0 1 0 2 TMED9 chr5:177019676 5'GT 177019676 Upstream 70bp
chr6 21000494 21000494 1 + G T SARC 21000514 + 21000494 21000534 41 GCTTTTCTGCACATACCAGTCCAGTCTGCCTCCGACAGCGT TCTTTTCTGCACATACCAGTCCAGTCTGCCTCCGACAGCGT < 41bp 1 0.192125955678575 1 0.047011137008667 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDKAL1 ENSG00000145996 CDS Human protein_coding chr6:21000514 chr6:21000494 nonsynonymous SNV 0.983 0 1 hm5C_associated_SNPs_32695 0 0 1 0 1 CDKAL1 chr6:21000458 3'AG 21000458 Downstream 37bp
chr6 168363201 168363201 1 + G T SARC 168363202 + 168363182 168363222 41 GCGAGGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG GCGAGGCAAGAGGAAGAGCTCCGGCGGCAGGAGGAGGAGCG < 41bp 1 0.350675714668283 1 0.66991776227951 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363202 chr6:168363201 nonsynonymous SNV 0.005 1 20 hm5C_associated_SNPs_32696 0 0 1 0 3 AFDN chr6:168363113 3'AG 168363113 Downstream 89bp
chr6 168363201 168363201 1 + G T SARC 168363202 + 168363182 168363222 41 GCGAGGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG GCGAGGCAAGAGGAAGAGCTCCGGCGGCAGGAGGAGGAGCG < 41bp 1 0.350675714668283 1 0.66991776227951 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363202 chr6:168363201 nonsynonymous SNV 0.005 1 20 hm5C_associated_SNPs_32696 0 0 1 0 3 AFDN chr6:168363119 3'AG 168363119 Downstream 83bp
chr6 168363201 168363201 1 + G T SARC 168363202 + 168363182 168363222 41 GCGAGGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG GCGAGGCAAGAGGAAGAGCTCCGGCGGCAGGAGGAGGAGCG < 41bp 1 0.350675714668283 1 0.66991776227951 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363202 chr6:168363201 nonsynonymous SNV 0.005 1 20 hm5C_associated_SNPs_32696 0 0 1 0 3 AFDN chr6:168363247 5'GT 168363247 Upstream 47bp
chr7 99702543 99702543 1 + G T SARC 99702547 + 99702527 99702567 41 GAGATTCGGCTCAAGAGCTTCCTTCCTAGCGGCTCTGGTGA GAGATTCGGCTCAAGATCTTCCTTCCTAGCGGCTCTGGTGA < 41bp 1 0.0294130273247664 1 0.162442773580551 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99702547 chr7:99702543 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_32697 0 0 1 0 2 AP4M1 chr7:99702497 3'AG 99702497 Downstream 47bp
chr7 99702543 99702543 1 + G T SARC 99702547 + 99702527 99702567 41 GAGATTCGGCTCAAGAGCTTCCTTCCTAGCGGCTCTGGTGA GAGATTCGGCTCAAGATCTTCCTTCCTAGCGGCTCTGGTGA < 41bp 1 0.0294130273247664 1 0.162442773580551 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99702547 chr7:99702543 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_32697 0 0 1 0 2 AP4M1 chr7:99702563 5'GT 99702563 Upstream 21bp
chr7 99747142 99747142 1 + G T SARC 99747129 + 99747109 99747149 41 CTTTACCCACTAGACTTCTGCGCTGACCCAGGGGCTGGAGC CTTTACCCACTAGACTTCTGCGCTGACCCAGGGTCTGGAGC < 41bp 1 0.305455331206378 1 0.0612159073352814 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LAMTOR4 ENSG00000188186 CDS Human protein_coding chr7:99747129 chr7:99747142 synonymous SNV . 0 34 hm5C_associated_SNPs_32698 0 0 1 0 2 LAMTOR4 chr7:99747122 3'AG 99747122 Downstream 21bp
chr7 99747142 99747142 1 + G T SARC 99747129 + 99747109 99747149 41 CTTTACCCACTAGACTTCTGCGCTGACCCAGGGGCTGGAGC CTTTACCCACTAGACTTCTGCGCTGACCCAGGGTCTGGAGC < 41bp 1 0.305455331206378 1 0.0612159073352814 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LAMTOR4 ENSG00000188186 CDS Human protein_coding chr7:99747129 chr7:99747142 synonymous SNV . 0 34 hm5C_associated_SNPs_32698 0 0 1 0 2 LAMTOR4 chr7:99747202 5'GT 99747202 Upstream 61bp
chr8 22447210 22447210 1 + G T SARC 22447218 + 22447198 22447238 41 CCCGACAGTCCAGCTCCTTTCGGCTCTTGCAGGAAGCCCTG CCCGACAGTCCATCTCCTTTCGGCTCTTGCAGGAAGCCCTG < 41bp 1 0.688466216547235 1 0.166412681341171 experiment 0.623067566905529 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDLIM2 ENSG00000120913;ENSG00000248235 CDS Human other chr8:22447218 chr8:22447210 nonsynonymous SNV 0.998 4 13 hm5C_associated_SNPs_32699 0 0 1 0 1 PDLIM2 chr8:22447254 5'GT 22447254 Upstream 45bp
chr11 125514418 125514418 1 + G T SARC 125514419 + 125514399 125514439 41 ACATGTAGAACCCCTGGCAGCGGTTGGTCAAAAGAATGACA ACATGTAGAACCCCTGGCATCGGTTGGTCAAAAGAATGACA < 41bp 1 0.215254660907357 1 0.308388948440552 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125514419 chr11:125514418 nonsynonymous SNV 0.996 4 20 hm5C_associated_SNPs_32703 0 0 1 1 1 CHEK1 chr11:125514407 3'AG 125514407 Downstream 12bp
chr17 34147387 34147387 1 + G T SARC 34147392 + 34147372 34147412 41 AGCAGAGCTCATATAGCCAGCAACCATATAATAACCAGGGA AGCAGAGCTCATATATCCAGCAACCATATAATAACCAGGGA < 41bp 1 0.188546128199228 1 0.311992108821869 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF15 ENSG00000172660 CDS Human other chr17:34147392 chr17:34147387 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_32706 0 0 1 1 2 TAF15 chr17:34147336 3'AG 34147336 Downstream 52bp
chr17 34147387 34147387 1 + G T SARC 34147392 + 34147372 34147412 41 AGCAGAGCTCATATAGCCAGCAACCATATAATAACCAGGGA AGCAGAGCTCATATATCCAGCAACCATATAATAACCAGGGA < 41bp 1 0.188546128199228 1 0.311992108821869 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF15 ENSG00000172660 CDS Human other chr17:34147392 chr17:34147387 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_32706 0 0 1 1 2 TAF15 chr17:34147441 5'GT 34147441 Upstream 55bp
chr20 62312058 62312058 1 + G T SARC 62312059 + 62312039 62312079 41 GGCCGGACTGCAGAAGCTGGCGGACATTATCCAGGTGGGGC GGCCGGACTGCAGAAGCTGTCGGACATTATCCAGGTGGGGC < 41bp 1 0.293401447435951 1 0.501323640346527 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62312059 chr20:62312058 nonsynonymous SNV 0.510 0 20 hm5C_associated_SNPs_32711 0 0 1 0 2 RTEL1 chr20:62312017 3'AG 62312017 Downstream 42bp
chr20 62312058 62312058 1 + G T SARC 62312059 + 62312039 62312079 41 GGCCGGACTGCAGAAGCTGGCGGACATTATCCAGGTGGGGC GGCCGGACTGCAGAAGCTGTCGGACATTATCCAGGTGGGGC < 41bp 1 0.293401447435951 1 0.501323640346527 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62312059 chr20:62312058 nonsynonymous SNV 0.510 0 20 hm5C_associated_SNPs_32711 0 0 1 0 2 RTEL1 chr20:62312072 5'GT 62312072 Upstream 15bp
chrX 41089059 41089059 1 + G T SARC 41089043 + 41089023 41089063 41 TCCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAG TCCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCATATAG < 41bp 1 0.0471444217211938 1 0.159499704837799 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089043 chrX:41089059 nonsynonymous SNV 0.999 0 37 hm5C_associated_SNPs_32712 0 0 0 0 1 USP9X chrX:41089080 5'GT 41089080 Upstream 22bp
chrX 41089059 41089059 1 + G T SARC 41089044 + 41089024 41089064 41 CCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAGA CCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCATATAGA < 41bp 1 0.492881623099482 1 0.17057666182518 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089044 chrX:41089059 nonsynonymous SNV 0.999 0 36 hm5C_associated_SNPs_32713 0 0 0 0 1 USP9X chrX:41089080 5'GT 41089080 Upstream 22bp
chrX 41089059 41089059 1 + G T SARC 41089046 + 41089026 41089066 41 AGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAGAAA AGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCATATAGAAA < 41bp 1 0.0598806012695053 1 0.0546635389328003 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089046 chrX:41089059 nonsynonymous SNV 0.999 0 34 hm5C_associated_SNPs_32714 0 0 0 0 1 USP9X chrX:41089080 5'GT 41089080 Upstream 22bp
chrX 41089059 41089059 1 + G T SARC 41089047 + 41089027 41089067 41 GAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAGAAAT GAGGAGGTAAAAAAAGCCACCAGTGTGCAGCATATAGAAAT < 41bp 1 0.119436905192958 1 0.104471474885941 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089047 chrX:41089059 nonsynonymous SNV 0.999 0 33 hm5C_associated_SNPs_32715 0 0 0 0 1 USP9X chrX:41089080 5'GT 41089080 Upstream 22bp
chr1 193205386 193205386 1 + G T SARC 193205390 + 193205370 193205410 41 ACTTTTCTACTTGTAGGGACCGCGTTGTAGCCGTTTTTGTG ACTTTTCTACTTGTAGTGACCGCGTTGTAGCCGTTTTTGTG < 41bp 1 0.747480753476708 1 0.39929324388504 experiment 0.505038493046584 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC73 ENSG00000134371 CDS Human protein_coding chr1:193205390 chr1:193205386 nonsynonymous SNV 0.722 5 17 hm5C_associated_SNPs_32716 0 0 1 0 1 CDC73 chr1:193205386 3'AG 193205386 Downstream 1bp
chr3 130683797 130683797 1 + T A SARC 130683793 + 130683773 130683813 41 TAATGATTTAATTCTTTAGGCTGCTGTAATGTGATTTGTTC TAATGATTTAATTCTTTAGGCTGCAGTAATGTGATTTGTTC < 41bp 1 0.489586776150663 1 0.394155621528625 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130683793 chr3:130683797 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_32717 0 0 1 0 2 ATP2C1 chr3:130683792 3'AG 130683792 Downstream 6bp
chr3 130683797 130683797 1 + T A SARC 130683793 + 130683773 130683813 41 TAATGATTTAATTCTTTAGGCTGCTGTAATGTGATTTGTTC TAATGATTTAATTCTTTAGGCTGCAGTAATGTGATTTGTTC < 41bp 1 0.489586776150663 1 0.394155621528625 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130683793 chr3:130683797 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_32717 0 0 1 0 2 ATP2C1 chr3:130683889 5'GT 130683889 Upstream 93bp
chr17 25633870 25633870 1 + G T SARC 25633851 + 25633831 25633871 41 GGGCATCAGAATTGGGTGTACAGCTGTGCATTCTCTCCTGA GGGCATCAGAATTGGGTGTACAGCTGTGCATTCTCTCCTTA < 41bp 1 0.751474639055665 1 0.0916449129581451 experiment 0.49705072188867 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WSB1 ENSG00000109046 CDS Human protein_coding chr17:25633851 chr17:25633870 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_32718 0 0 1 0 2 WSB1 chr17:25633808 3'AG 25633808 Downstream 63bp
chr17 25633870 25633870 1 + G T SARC 25633851 + 25633831 25633871 41 GGGCATCAGAATTGGGTGTACAGCTGTGCATTCTCTCCTGA GGGCATCAGAATTGGGTGTACAGCTGTGCATTCTCTCCTTA < 41bp 1 0.751474639055665 1 0.0916449129581451 experiment 0.49705072188867 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WSB1 ENSG00000109046 CDS Human protein_coding chr17:25633851 chr17:25633870 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_32718 0 0 1 0 2 WSB1 chr17:25633908 5'GT 25633908 Upstream 39bp
chr16 50342240 50342240 1 + C T SARC 50342243 + 50342223 50342263 41 TTCCCTCCTCTCCAGGACGGCGGCACTGGGTGTGTCCTTCG TTCCCTCCTCTCCAGGATGGCGGCACTGGGTGTGTCCTTCG < 41bp 1 0.648760011491133 1 0.342694759368896 experiment 0.702479977017733 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50342243 chr16:50342240 nonsynonymous SNV 0.007 0 18 hm5C_associated_SNPs_32719 0 0 1 0 2 ADCY7 chr16:50342238 3'AG 50342238 Downstream 3bp
chr16 50342240 50342240 1 + C T SARC 50342243 + 50342223 50342263 41 TTCCCTCCTCTCCAGGACGGCGGCACTGGGTGTGTCCTTCG TTCCCTCCTCTCCAGGATGGCGGCACTGGGTGTGTCCTTCG < 41bp 1 0.648760011491133 1 0.342694759368896 experiment 0.702479977017733 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50342243 chr16:50342240 nonsynonymous SNV 0.007 0 18 hm5C_associated_SNPs_32719 0 0 1 0 2 ADCY7 chr16:50342322 5'GT 50342322 Upstream 83bp
chr15 74918210 74918210 1 + G T SARC 74918204 + 74918184 74918224 41 ACATGTGCATCGCCTTTGAGCTCCTGGGCAAGAACACCTTT ACATGTGCATCGCCTTTGAGCTCCTGTGCAAGAACACCTTT < 41bp 1 0.483755629618063 1 0.119519084692001 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLK3 ENSG00000179335 CDS Human protein_coding chr15:74918204 chr15:74918210 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_32721 0 0 1 0 2 CLK3 chr15:74918143 3'AG 74918143 Downstream 68bp
chr15 74918210 74918210 1 + G T SARC 74918204 + 74918184 74918224 41 ACATGTGCATCGCCTTTGAGCTCCTGGGCAAGAACACCTTT ACATGTGCATCGCCTTTGAGCTCCTGTGCAAGAACACCTTT < 41bp 1 0.483755629618063 1 0.119519084692001 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLK3 ENSG00000179335 CDS Human protein_coding chr15:74918204 chr15:74918210 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_32721 0 0 1 0 2 CLK3 chr15:74918309 5'GT 74918309 Upstream 100bp
chr1 10402206 10402206 1 + G A SARC 10402207 + 10402187 10402227 41 AGCAGCACCCACTTCATCTGCAAGGACAGGAGCTTAACAGG AGCAGCACCCACTTCATCTACAAGGACAGGAGCTTAACAGG < 41bp 1 0.314173203256746 1 0.723155200481415 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10402207 chr1:10402206 synonymous SNV . 0 20 hm5C_associated_SNPs_32722 0 0 1 0 2 KIF1B chr1:10402108 3'AG 10402108 Downstream 99bp
chr1 10402206 10402206 1 + G A SARC 10402207 + 10402187 10402227 41 AGCAGCACCCACTTCATCTGCAAGGACAGGAGCTTAACAGG AGCAGCACCCACTTCATCTACAAGGACAGGAGCTTAACAGG < 41bp 1 0.314173203256746 1 0.723155200481415 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10402207 chr1:10402206 synonymous SNV . 0 20 hm5C_associated_SNPs_32722 0 0 1 0 2 KIF1B chr1:10402226 5'GT 10402226 Upstream 21bp
chr4 184192380 184192380 1 + G T SARC 184192371 + 184192351 184192391 41 CTGTATTTCAACCAAACCAGCCGTTAGTAGATTCTATAGAC CTGTATTTCAACCAAACCAGCCGTTAGTATATTCTATAGAC < 41bp 1 0.023661770715509 1 0.0524653792381287 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WWC2 ENSG00000151718 CDS Human protein_coding chr4:184192371 chr4:184192380 nonsynonymous SNV 0.008 1 30 hm5C_associated_SNPs_32723 0 0 1 0 1 WWC2 chr4:184192394 5'GT 184192394 Upstream 15bp
chr5 141353195 141353195 1 + G T SARC 141353198 + 141353178 141353218 41 CAGGAGGATGAATTGCTGGCCCTGGCAAGTATTTACGATGG CAGGAGGATGAATTGCTTGCCCTGGCAAGTATTTACGATGG < 41bp 1 0.405701722709058 1 0.180965334177017 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control RNF14 ENSG00000013561 CDS Human antisense chr5:141353198 chr5:141353195 synonymous SNV . 0 18 hm5C_associated_SNPs_32724 0 0 1 0 1 RNF14 chr5:141353148 3'AG 141353148 Downstream 48bp
chr10 94773974 94773974 1 + C T SARC 94773982 + 94773962 94774002 41 TCTGAGCCTGTGCCAGGATTCCAGGGGGATACCCTGCAGCT TCTGAGCCTGTGTCAGGATTCCAGGGGGATACCCTGCAGCT < 41bp 1 0.716025775328302 1 0.878320217132568 experiment 0.567948449343397 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control EXOC6 ENSG00000138190 CDS Human protein_coding chr10:94773982 chr10:94773974 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_32725 0 0 1 0 1 EXOC6 chr10:94774024 5'GT 94774024 Upstream 51bp
chr19 49993810 49993810 1 + G A SARC 49993825 + 49993805 49993845 41 CAGCCGCATCTTCTGGCGGACCGTGCGAGGTGAGCAGAGCG CAGCCACATCTTCTGGCGGACCGTGCGAGGTGAGCAGAGCG < 41bp 1 0.163380931544708 1 0.35992220044136 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993825 chr19:49993810 nonsynonymous SNV 0.995 1 6 hm5C_associated_SNPs_32726 0 0 1 0 2 RPL13A chr19:49993732 3'AG 49993732 Downstream 79bp
chr19 49993810 49993810 1 + G A SARC 49993825 + 49993805 49993845 41 CAGCCGCATCTTCTGGCGGACCGTGCGAGGTGAGCAGAGCG CAGCCACATCTTCTGGCGGACCGTGCGAGGTGAGCAGAGCG < 41bp 1 0.163380931544708 1 0.35992220044136 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993825 chr19:49993810 nonsynonymous SNV 0.995 1 6 hm5C_associated_SNPs_32726 0 0 1 0 2 RPL13A chr19:49993833 5'GT 49993833 Upstream 24bp
chr22 26400685 26400685 1 + G T SARC 26400695 + 26400675 26400715 41 TTATTCTAGGGATAACGTCTCCATCCTCAGCTCCCAGCCAG TTATTCTAGGTATAACGTCTCCATCCTCAGCTCCCAGCCAG < 41bp 1 0.0286875536718606 1 0.245840668678284 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26400695 chr22:26400685 nonsynonymous SNV 0.858 2 11 hm5C_associated_SNPs_32727 0 0 0 0 1 MYO18B chr22:26400684 3'AG 26400684 Downstream 2bp
chr5 176524620 176524620 1 + C T SARC 176524624 + 176524604 176524644 41 ATTCTGTCTTCAGCCACGACCCCCTGCCATTGGGATCCAGC ATTCTGTCTTCAGCCATGACCCCCTGCCATTGGGATCCAGC < 41bp 1 0.171682235864104 1 0.0344964563846588 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176524624 chr5:176524620 synonymous SNV . 0 17 hm5C_associated_SNPs_32728 0 0 1 0 1 FGFR4 chr5:176524528 3'AG 176524528 Downstream 93bp
chr5 176524620 176524620 1 + C T SARC 176524627 + 176524607 176524647 41 CTGTCTTCAGCCACGACCCCCTGCCATTGGGATCCAGCTCC CTGTCTTCAGCCATGACCCCCTGCCATTGGGATCCAGCTCC < 41bp 1 0.303645756772742 1 0.0377809405326843 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176524627 chr5:176524620 synonymous SNV . 0 14 hm5C_associated_SNPs_32729 0 0 1 0 1 FGFR4 chr5:176524528 3'AG 176524528 Downstream 93bp
chr11 36422797 36422797 1 + G A SARC 36422793 + 36422773 36422813 41 CCTTCCCCGATTCCAAGCAGCTCGGCAGGCTCTGCAGCTGA CCTTCCCCGATTCCAAGCAGCTCGACAGGCTCTGCAGCTGA < 41bp 1 0.7794879584396 1 0.759253621101379 experiment 0.441024083120801 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRR5L ENSG00000135362 CDS Human protein_coding chr11:36422793 chr11:36422797 synonymous SNV . 0 25 hm5C_associated_SNPs_32730 0 0 0 0 1 PRR5L chr11:36422835 5'GT 36422835 Upstream 39bp
chr7 142459626 142459626 1 + C T SARC 142459625 + 142459605 142459645 41 ATGCCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGG ATGCCTGCCCTGCCCATCAGCTGCATCCAGGTGAGACTGGG < 41bp 1 0.705406893134141 1 0.586758196353912 experiment 0.589186213731718 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459625 chr7:142459626 nonsynonymous SNV 0.585 3 22 hm5C_associated_SNPs_32731 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 2bp
chr7 142459626 142459626 1 + C T SARC 142459628 + 142459608 142459648 41 CCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGA CCTGCCCTGCCCATCAGCTGCATCCAGGTGAGACTGGGAGA < 41bp 1 0.247894553957658 1 0.0575610399246216 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459628 chr7:142459626 nonsynonymous SNV 0.585 3 19 hm5C_associated_SNPs_32732 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 2bp
chr7 142459626 142459626 1 + C T SARC 142459631 + 142459611 142459651 41 GCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGAGCA GCCCTGCCCATCAGCTGCATCCAGGTGAGACTGGGAGAGCA < 41bp 1 0.597763948607197 1 0.818934857845306 experiment 0.804472102785607 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459631 chr7:142459626 nonsynonymous SNV 0.585 3 16 hm5C_associated_SNPs_32733 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 2bp
chr15 40284991 40284991 1 + G T SARC 40284974 + 40284954 40284994 41 GTTTTCCTCCACACAGGTCACTTAACTGGGATGGTTGGCAC GTTTTCCTCCACACAGGTCACTTAACTGGGATGGTTGTCAC < 41bp 1 0.387676215306771 1 0.680598318576813 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40284974 chr15:40284991 nonsynonymous SNV 0.998 4 38 hm5C_associated_SNPs_32734 0 0 1 0 2 EIF2AK4 chr15:40284970 3'AG 40284970 Downstream 22bp
chr15 40284991 40284991 1 + G T SARC 40284974 + 40284954 40284994 41 GTTTTCCTCCACACAGGTCACTTAACTGGGATGGTTGGCAC GTTTTCCTCCACACAGGTCACTTAACTGGGATGGTTGTCAC < 41bp 1 0.387676215306771 1 0.680598318576813 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40284974 chr15:40284991 nonsynonymous SNV 0.998 4 38 hm5C_associated_SNPs_32734 0 0 1 0 2 EIF2AK4 chr15:40285049 5'GT 40285049 Upstream 59bp
chr4 148827821 148827821 1 + C T SKCM 148827838 + 148827818 148827858 41 TTTCCGAAGAGGAAAGGAAGCAGTGGTTGGAAGCTCTGGGT TTTTCGAAGAGGAAAGGAAGCAGTGGTTGGAAGCTCTGGGT < 41bp 1 0.713304205553213 1 0.755791246891022 experiment 0.573391588893574 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control ARHGAP10 ENSG00000071205 CDS Human protein_coding chr4:148827838 chr4:148827821 nonsynonymous SNV 0.612 3 4 hm5C_associated_SNPs_32735 0 0 0 0 2 ARHGAP10 chr4:148827789 3'AG 148827789 Downstream 33bp
chr4 148827821 148827821 1 + C T SKCM 148827838 + 148827818 148827858 41 TTTCCGAAGAGGAAAGGAAGCAGTGGTTGGAAGCTCTGGGT TTTTCGAAGAGGAAAGGAAGCAGTGGTTGGAAGCTCTGGGT < 41bp 1 0.713304205553213 1 0.755791246891022 experiment 0.573391588893574 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control ARHGAP10 ENSG00000071205 CDS Human protein_coding chr4:148827838 chr4:148827821 nonsynonymous SNV 0.612 3 4 hm5C_associated_SNPs_32735 0 0 0 0 2 ARHGAP10 chr4:148827870 5'GT 148827870 Upstream 50bp
chr16 19126060 19126060 1 + C T SKCM 19126077 + 19126057 19126097 41 TTCCGAGAGCCGGGCCTCAGCATCCTGCTGGAGAGTTACTA TTCTGAGAGCCGGGCCTCAGCATCCTGCTGGAGAGTTACTA < 41bp 1 0.25825554012127 1 0.39610230922699 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ITPRIPL2 ENSG00000205730;ENSG00000261427 CDS Human other chr16:19126077 chr16:19126060 stopgain 0.144 0 4 hm5C_associated_SNPs_32736 0 0 1 0 1 ITPRIPL2 chr16:19125963 3'AG 19125963 Downstream 98bp
chr19 55817708 55817708 1 + C T SKCM 55817715 + 55817695 55817735 41 GTCTTCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTC GTCTTCCAAAAGCTCGTCCGCTTCCAGGTGGACATCAGCTC < 41bp 1 0.116255564091905 1 0.141448020935059 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55817715 chr19:55817708 nonsynonymous SNV 0.939 4 14 hm5C_associated_SNPs_32737 0 0 1 0 1 BRSK1 chr19:55817620 3'AG 55817620 Downstream 89bp
chr19 55817708 55817708 1 + C T SKCM 55817719 + 55817699 55817739 41 TCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTCCTCT TCCAAAAGCTCGTCCGCTTCCAGGTGGACATCAGCTCCTCT < 41bp 1 0.745163373126499 1 0.945143461227417 experiment 0.509673253747002 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55817719 chr19:55817708 nonsynonymous SNV 0.939 4 10 hm5C_associated_SNPs_32738 0 0 1 0 1 BRSK1 chr19:55817620 3'AG 55817620 Downstream 89bp
chr14 64484368 64484368 1 + G A SKCM 64484376 + 64484356 64484396 41 CTCTAGCTTTGTGGGACAAACTTTTTAACTTAAAAAATGTC CTCTAGCTTTGTAGGACAAACTTTTTAACTTAAAAAATGTC < 41bp 1 0.0357544010813386 1 0.0849299132823944 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64484376 chr14:64484368 stopgain 1.000 1 13 hm5C_associated_SNPs_32740 0 0 1 0 1 SYNE2 chr14:64484313 3'AG 64484313 Downstream 56bp
chr15 64410326 64410326 1 + G T SKCM 64410330 + 64410310 64410350 41 TTTTAGATGCCACAGTGGAGCTATCCTTGGACAGCACACAA TTTTAGATGCCACAGTTGAGCTATCCTTGGACAGCACACAA < 41bp 1 0.0801705617519913 1 0.179346561431885 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410330 chr15:64410326 synonymous SNV . 0 17 hm5C_associated_SNPs_32741 0 0 1 0 1 SNX1 chr15:64410316 3'AG 64410316 Downstream 11bp
chr15 64410326 64410326 1 + G T SKCM 64410334 + 64410314 64410354 41 AGATGCCACAGTGGAGCTATCCTTGGACAGCACACAAAATA AGATGCCACAGTTGAGCTATCCTTGGACAGCACACAAAATA < 41bp 1 0.0404663248447787 1 0.127643793821335 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410334 chr15:64410326 synonymous SNV . 0 13 hm5C_associated_SNPs_32742 0 0 1 0 1 SNX1 chr15:64410316 3'AG 64410316 Downstream 11bp
chr4 20568996 20568996 1 + C T SKCM 20568982 + 20568962 20569002 41 AGTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGG AGTGATCCAGTTGACTTTTACCGATGCACCTGTCTATATGG < 41bp 1 0.111115151260179 1 0.321813374757767 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568982 chr4:20568996 nonsynonymous SNV 0.988 3 35 hm5C_associated_SNPs_32743 0 0 0 0 1 SLIT2 chr4:20569009 5'GT 20569009 Upstream 14bp
chr4 20568996 20568996 1 + C T SKCM 20568983 + 20568963 20569003 41 GTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGGT GTGATCCAGTTGACTTTTACCGATGCACCTGTCTATATGGT < 41bp 1 0.142337802061941 1 0.545811235904694 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568983 chr4:20568996 nonsynonymous SNV 0.988 3 34 hm5C_associated_SNPs_32744 0 0 0 0 1 SLIT2 chr4:20569009 5'GT 20569009 Upstream 14bp
chr7 73944161 73944161 1 + C T SKCM 73944163 + 73944143 73944183 41 GGGCATCCCGGACAAGATCCCCTTCAAGCGCCCCTGCACTT GGGCATCCCGGACAAGATTCCCTTCAAGCGCCCCTGCACTT < 41bp 1 0.0225774564586283 1 0.127998054027557 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73944163 chr7:73944161 synonymous SNV . 0 19 hm5C_associated_SNPs_32745 0 0 1 0 2 GTF2IRD1 chr7:73944064 3'AG 73944064 Downstream 98bp
chr7 73944161 73944161 1 + C T SKCM 73944163 + 73944143 73944183 41 GGGCATCCCGGACAAGATCCCCTTCAAGCGCCCCTGCACTT GGGCATCCCGGACAAGATTCCCTTCAAGCGCCCCTGCACTT < 41bp 1 0.0225774564586283 1 0.127998054027557 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73944163 chr7:73944161 synonymous SNV . 0 19 hm5C_associated_SNPs_32745 0 0 1 0 2 GTF2IRD1 chr7:73944247 5'GT 73944247 Upstream 87bp
chr6 30610592 30610592 1 + C T SKCM 30610600 + 30610580 30610620 41 AACAGGGCCCCTCGCCGCGCCACACCTCCAGCCCACCCACC AACAGGGCCCCTTGCCGCGCCACACCTCCAGCCCACCCACC < 41bp 1 0.290640628794262 1 0.429947018623352 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ATAT1 ENSG00000137343 CDS Human protein_coding chr6:30610600 chr6:30610592 nonsynonymous SNV 0.985 3 13 hm5C_associated_SNPs_32746 0 0 0 0 1 ATAT1 chr6:30610545 3'AG 30610545 Downstream 48bp
chr16 87723259 87723259 1 + G A SKCM 87723254 + 87723234 87723274 41 TCTTGTGTCCCCATACAGGGCTGGAGTACCAGAGGCCGAAG TCTTGTGTCCCCATACAGGGCTGGAATACCAGAGGCCGAAG < 41bp 1 0.719097687745438 1 0.453926205635071 experiment 0.561804624509124 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control JPH3 ENSG00000154118 CDS Human protein_coding chr16:87723254 chr16:87723259 synonymous SNV . 0 26 hm5C_associated_SNPs_32748 0 0 0 0 1 JPH3 chr16:87723252 3'AG 87723252 Downstream 8bp
chr4 183601743 183601743 1 + C T SKCM 183601733 + 183601713 183601753 41 TGTAGTGGCAACGGGCAGTACTCCAAGGGCCGCTGCCTGTG TGTAGTGGCAACGGGCAGTACTCCAAGGGCTGCTGCCTGTG < 41bp 1 0.758368294671519 1 0.986494719982147 experiment 0.483263410656962 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|28418038;GSE74771;RNA-BisSeq;293T;Control TENM3 ENSG00000218336 CDS Human protein_coding chr4:183601733 chr4:183601743 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_32749 0 0 1 0 1 TENM3 chr4:183601696 3'AG 183601696 Downstream 48bp
chr17 19237303 19237303 1 + C T SKCM 19237313 + 19237293 19237333 41 TTAACCCTTTCCAGGTGAACCAGCCCCAGCCGCTGACACTG TTAACCCTTTTCAGGTGAACCAGCCCCAGCCGCTGACACTG < 41bp 1 0.524088126036718 1 0.408749282360077 experiment 0.951823747926564 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EPN2 ENSG00000072134 CDS Human protein_coding chr17:19237313 chr17:19237303 synonymous SNV . 0 11 hm5C_associated_SNPs_32750 0 0 1 0 1 EPN2 chr17:19237269 3'AG 19237269 Downstream 35bp
chr9 135919197 135919197 1 + C T SKCM 135919215 + 135919195 135919235 41 CTCCGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC CTTCGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC < 41bp 1 0.0544232451313802 1 0.0231720209121704 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919215 chr9:135919197 synonymous SNV . 0 3 hm5C_associated_SNPs_32751 0 0 1 0 1 GTF3C5 chr9:135919115 3'AG 135919115 Downstream 83bp
chr1 200817237 200817237 1 + G A SKCM 200817245 + 200817225 200817265 41 CTCCAAACCGAGGAATCACTCGTTCTATTAGTAATGAAGGA CTCCAAACCGAGAAATCACTCGTTCTATTAGTAATGAAGGA < 41bp 1 0.0629906424411444 1 0.541677892208099 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200817245 chr1:200817237 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_32752 0 0 1 0 1 CAMSAP2 chr1:200817160 3'AG 200817160 Downstream 78bp
chr17 48631746 48631746 1 + C T SKCM 48631727 + 48631707 48631747 41 TGTGTGTGCCTATTGACCGCCTTTTCCGAGCGCATGCGTCG TGTGTGTGCCTATTGACCGCCTTTTCCGAGCGCATGCGTTG < 41bp 1 0.0491419376693786 1 0.0126864910125732 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPATA20 ENSG00000006282 CDS Human protein_coding chr17:48631727 chr17:48631746 nonsynonymous SNV 0.833 2 40 hm5C_associated_SNPs_32755 0 0 1 0 1 SPATA20 chr17:48631811 5'GT 48631811 Upstream 66bp
chr1 43903269 43903269 1 + C T SKCM 43903277 + 43903257 43903297 41 CTTTCCCAGGCTCCTAGAGACATCCTGCAGTGACCGGCCAT CTTTCCCAGGCTTCTAGAGACATCCTGCAGTGACCGGCCAT < 41bp 1 0.0508142329266739 1 0.0400717258453369 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43903277 chr1:43903269 synonymous SNV . 0 13 hm5C_associated_SNPs_32756 0 0 0 0 1 SZT2 chr1:43903266 3'AG 43903266 Downstream 4bp
chr7 142459670 142459670 1 + G A SKCM 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAAGGGAA < 41bp 1 0.677077575069877 1 0.126971811056137 experiment 0.645844849860247 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459670 synonymous SNV . 0 36 hm5C_associated_SNPs_32757 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 46bp
chr7 142459670 142459670 1 + G A SKCM 142459658 + 142459638 142459678 41 AGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAATGA AGACTGGGAGAGCACAACATCGAAGTCCTGGAAGGGAATGA < 41bp 1 0.743025481889172 1 0.451658755540848 experiment 0.513949036221656 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459658 chr7:142459670 synonymous SNV . 0 33 hm5C_associated_SNPs_32758 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 46bp
chr7 142459670 142459670 1 + G A SKCM 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCACAACATCGAAGTCCTGGAAGGGAATGAGCAGTT < 41bp 1 0.549986952706525 1 0.286900043487549 experiment 0.900026094586951 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459670 synonymous SNV . 0 27 hm5C_associated_SNPs_32759 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 46bp
chr7 142459670 142459670 1 + G A SKCM 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG AAGTCCTGGAAGGGAATGAGCAGTTCATCAATGCAGCCAAG < 41bp 1 0.509727288346642 1 0.19905212521553 experiment 0.980545423306715 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459670 synonymous SNV . 0 11 hm5C_associated_SNPs_32760 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 46bp
chr7 142459670 142459670 1 + G A SKCM 142459685 + 142459665 142459705 41 CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT CTGGAAGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT < 41bp 1 0.638789652102476 1 0.0452648103237152 experiment 0.722420695795049 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459685 chr7:142459670 synonymous SNV . 0 6 hm5C_associated_SNPs_32761 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 46bp
chr7 142459670 142459670 1 + G A SKCM 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAAGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG < 41bp 1 0.660298724818049 1 0.239472299814224 experiment 0.679402550363902 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459670 synonymous SNV . 0 3 hm5C_associated_SNPs_32762 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 46bp
chr19 18729300 18729300 1 + C T SKCM 18729284 + 18729264 18729304 41 ACCCTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCCAGGT ACCCTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCTAGGT < 41bp 1 0.197015859679432 1 0.135787695646286 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM59L ENSG00000105696 CDS Human protein_coding chr19:18729284 chr19:18729300 stopgain 0.994 1 37 hm5C_associated_SNPs_32763 0 0 0 0 1 TMEM59L chr19:18729302 5'GT 18729302 Upstream 3bp
chr12 53427604 53427604 1 + C T SKCM 53427592 + 53427572 53427612 41 AAGTTTCATTTAACTTAGGTCCCCCCCAAAGACCCAAACTG AAGTTTCATTTAACTTAGGTCCCCCCCAAAGATCCAAACTG < 41bp 1 0.0431724433547317 1 0.0445610582828522 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53427592 chr12:53427604 nonsynonymous SNV 0.999 4 33 hm5C_associated_SNPs_32764 0 0 1 0 1 EIF4B chr12:53427590 3'AG 53427590 Downstream 15bp
chr20 47705915 47705915 1 + C T SKCM 47705919 + 47705899 47705939 41 TGGTGTTTACTGAAATCTTACAAAATGATGTGCAAGGTAAG TGGTGTTTACTGAAATTTTACAAAATGATGTGCAAGGTAAG < 41bp 1 0.37883299865992 1 0.354199767112732 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CSE1L ENSG00000124207 CDS Human protein_coding chr20:47705919 chr20:47705915 synonymous SNV . 0 17 hm5C_associated_SNPs_32765 0 0 1 0 1 CSE1L chr20:47705934 5'GT 47705934 Upstream 20bp
chr19 3434309 3434309 1 + C T SKCM 3434306 + 3434286 3434326 41 ACTGGAACAGGACCCAACTTCTCCCTGGGGGAGCTGCAGGG ACTGGAACAGGACCCAACTTCTCTCTGGGGGAGCTGCAGGG < 41bp 1 0.19875344957202 1 0.671404898166656 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFIC ENSG00000141905 CDS Human protein_coding chr19:3434306 chr19:3434309 synonymous SNV . 0 24 hm5C_associated_SNPs_32766 0 0 1 0 2 NFIC chr19:3434275 3'AG 3434275 Downstream 35bp
chr19 3434309 3434309 1 + C T SKCM 3434306 + 3434286 3434326 41 ACTGGAACAGGACCCAACTTCTCCCTGGGGGAGCTGCAGGG ACTGGAACAGGACCCAACTTCTCTCTGGGGGAGCTGCAGGG < 41bp 1 0.19875344957202 1 0.671404898166656 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFIC ENSG00000141905 CDS Human protein_coding chr19:3434306 chr19:3434309 synonymous SNV . 0 24 hm5C_associated_SNPs_32766 0 0 1 0 2 NFIC chr19:3434398 5'GT 3434398 Upstream 90bp
chrX 41198307 41198307 1 + C T SKCM 41198304 + 41198284 41198324 41 TTTAGAAGGGCGCTATATTCCTCCTCATTTAAGGAACCGAG TTTAGAAGGGCGCTATATTCCTCTTCATTTAAGGAACCGAG < 41bp 1 0.168400124071342 1 0.269516468048096 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41198304 chrX:41198307 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_32767 0 0 1 0 2 DDX3X chrX:41198289 3'AG 41198289 Downstream 19bp
chrX 41198307 41198307 1 + C T SKCM 41198304 + 41198284 41198324 41 TTTAGAAGGGCGCTATATTCCTCCTCATTTAAGGAACCGAG TTTAGAAGGGCGCTATATTCCTCTTCATTTAAGGAACCGAG < 41bp 1 0.168400124071342 1 0.269516468048096 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41198304 chrX:41198307 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_32767 0 0 1 0 2 DDX3X chrX:41198336 5'GT 41198336 Upstream 30bp
chr19 16962281 16962281 1 + C T SKCM 16962301 + 16962281 16962321 41 CCCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCGCTCCTC TCCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCGCTCCTC < 41bp 1 0.30988749822798 1 0.322341471910477 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIN3B ENSG00000127511 CDS Human protein_coding chr19:16962301 chr19:16962281 nonsynonymous SNV 0.026 0 1 hm5C_associated_SNPs_32768 0 0 0 0 2 SIN3B chr19:16962223 3'AG 16962223 Downstream 59bp
chr19 16962281 16962281 1 + C T SKCM 16962301 + 16962281 16962321 41 CCCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCGCTCCTC TCCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCGCTCCTC < 41bp 1 0.30988749822798 1 0.322341471910477 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIN3B ENSG00000127511 CDS Human protein_coding chr19:16962301 chr19:16962281 nonsynonymous SNV 0.026 0 1 hm5C_associated_SNPs_32768 0 0 0 0 2 SIN3B chr19:16962345 5'GT 16962345 Upstream 65bp
chr16 89789747 89789747 1 + C T SKCM 89789767 + 89789747 89789787 41 CCTGCCCCACCTTCAGAGGACACTGTCCTCCGAGTACTGCG TCTGCCCCACCTTCAGAGGACACTGTCCTCCGAGTACTGCG < 41bp 1 0.30110760047386 1 0.0287642478942871 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF276 ENSG00000158805 CDS Human protein_coding chr16:89789767 chr16:89789747 nonsynonymous SNV 0.572 0 1 hm5C_associated_SNPs_32769 0 0 1 0 1 ZNF276 chr16:89789668 3'AG 89789668 Downstream 80bp
chr19 16962282 16962282 1 + C T SKCM 16962301 + 16962281 16962321 41 CCCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCGCTCCTC CTCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCGCTCCTC < 41bp 1 0.293502396395567 1 0.323396861553192 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIN3B ENSG00000127511 CDS Human protein_coding chr19:16962301 chr19:16962282 synonymous SNV . 0 2 hm5C_associated_SNPs_32770 0 0 0 0 2 SIN3B chr19:16962223 3'AG 16962223 Downstream 60bp
chr19 16962282 16962282 1 + C T SKCM 16962301 + 16962281 16962321 41 CCCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCGCTCCTC CTCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCGCTCCTC < 41bp 1 0.293502396395567 1 0.323396861553192 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIN3B ENSG00000127511 CDS Human protein_coding chr19:16962301 chr19:16962282 synonymous SNV . 0 2 hm5C_associated_SNPs_32770 0 0 0 0 2 SIN3B chr19:16962345 5'GT 16962345 Upstream 64bp
chr1 22336293 22336293 1 + C T SKCM 22336274 + 22336254 22336294 41 CGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCA CGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTTA < 41bp 1 0.59920516739279 1 0.09054234623909 experiment 0.80158966521442 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336274 chr1:22336293 synonymous SNV . 0 40 hm5C_associated_SNPs_32771 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 58bp
chr1 22336293 22336293 1 + C T SKCM 22336277 + 22336257 22336297 41 TGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCT TGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTTATCT < 41bp 1 0.03919995871127 1 0.022905170917511 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336277 chr1:22336293 synonymous SNV . 0 37 hm5C_associated_SNPs_32772 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 58bp
chr1 22336293 22336293 1 + C T SKCM 22336278 + 22336258 22336298 41 GTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCTG GTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTTATCTG < 41bp 1 0.273499949197467 1 0.0905782282352448 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336278 chr1:22336293 synonymous SNV . 0 36 hm5C_associated_SNPs_32773 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 58bp
chr1 22336293 22336293 1 + C T SKCM 22336284 + 22336264 22336304 41 AGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCC AGCTTTGTTTCTGCCTTTGGCTGCAACTTTATCTGGAAGCC < 41bp 1 0.762087139679444 1 0.475740671157837 experiment 0.475825720641111 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336284 chr1:22336293 synonymous SNV . 0 30 hm5C_associated_SNPs_32774 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 58bp
chr1 22336293 22336293 1 + C T SKCM 22336287 + 22336267 22336307 41 TTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCAC TTTGTTTCTGCCTTTGGCTGCAACTTTATCTGGAAGCCCAC < 41bp 1 0.284111766235229 1 0.0218507647514343 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336287 chr1:22336293 synonymous SNV . 0 27 hm5C_associated_SNPs_32775 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 58bp
chr1 22336293 22336293 1 + C T SKCM 22336290 + 22336270 22336310 41 GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT GTTTCTGCCTTTGGCTGCAACTTTATCTGGAAGCCCACGGT < 41bp 1 0.357571840357295 1 0.33689758181572 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336290 chr1:22336293 synonymous SNV . 0 24 hm5C_associated_SNPs_32776 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 58bp
chr1 22336293 22336293 1 + C T SKCM 22336303 + 22336283 22336323 41 GCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTC GCTGCAACTTTATCTGGAAGCCCACGGTGTTCACTCGAGTC < 41bp 1 0.196825336395359 1 0.139496117830276 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336303 chr1:22336293 synonymous SNV . 0 11 hm5C_associated_SNPs_32777 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 58bp
chr1 22336293 22336293 1 + C T SKCM 22336304 + 22336284 22336324 41 CTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCT CTGCAACTTTATCTGGAAGCCCACGGTGTTCACTCGAGTCT < 41bp 1 0.314810416135428 1 0.157628029584885 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336304 chr1:22336293 synonymous SNV . 0 10 hm5C_associated_SNPs_32778 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 58bp
chr1 22336293 22336293 1 + C T SKCM 22336305 + 22336285 22336325 41 TGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTC TGCAACTTTATCTGGAAGCCCACGGTGTTCACTCGAGTCTC < 41bp 1 0.782802283159846 1 0.364582180976868 experiment 0.434395433680307 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336305 chr1:22336293 synonymous SNV . 0 9 hm5C_associated_SNPs_32779 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 58bp
chr1 22336293 22336293 1 + C T SKCM 22336307 + 22336287 22336327 41 CAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCG CAACTTTATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCG < 41bp 1 0.399779034514593 1 0.385743856430054 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336307 chr1:22336293 synonymous SNV . 0 7 hm5C_associated_SNPs_32780 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 58bp
chr19 3434308 3434308 1 + C T SKCM 3434306 + 3434286 3434326 41 ACTGGAACAGGACCCAACTTCTCCCTGGGGGAGCTGCAGGG ACTGGAACAGGACCCAACTTCTTCCTGGGGGAGCTGCAGGG < 41bp 1 0.162356761745631 1 0.525382518768311 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFIC ENSG00000141905 CDS Human protein_coding chr19:3434306 chr19:3434308 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_32781 0 0 1 0 2 NFIC chr19:3434275 3'AG 3434275 Downstream 34bp
chr19 3434308 3434308 1 + C T SKCM 3434306 + 3434286 3434326 41 ACTGGAACAGGACCCAACTTCTCCCTGGGGGAGCTGCAGGG ACTGGAACAGGACCCAACTTCTTCCTGGGGGAGCTGCAGGG < 41bp 1 0.162356761745631 1 0.525382518768311 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFIC ENSG00000141905 CDS Human protein_coding chr19:3434306 chr19:3434308 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_32781 0 0 1 0 2 NFIC chr19:3434398 5'GT 3434398 Upstream 91bp
chr11 17316991 17316991 1 + G A SKCM 17316973 + 17316953 17316993 41 ACATAGACAAGACAAAAGTACAAAATATTCACCCTGTGGAA ACATAGACAAGACAAAAGTACAAAATATTCACCCTGTGAAA < 41bp 1 0.63417089172426 1 0.111795574426651 experiment 0.73165821655148 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUCB2 ENSG00000070081 CDS Human protein_coding chr11:17316973 chr11:17316991 nonsynonymous SNV 0.997 0 39 hm5C_associated_SNPs_32782 0 0 1 0 1 NUCB2 chr11:17317014 5'GT 17317014 Upstream 24bp
chr7 142457353 142457353 1 + C T SKCM 142457345 + 142457325 142457365 41 ACTCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTG ACTCTACCACCATGAATCCACTCCTGATTCTTACCTTTGTG < 41bp 1 0.233370918722789 1 0.0734342932701111 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457345 chr7:142457353 synonymous SNV . 0 29 hm5C_associated_SNPs_32798 0 0 0 1 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 23bp
chr7 142457353 142457353 1 + C T SKCM 142457347 + 142457327 142457367 41 TCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGC TCTACCACCATGAATCCACTCCTGATTCTTACCTTTGTGGC < 41bp 1 0.317950554029479 1 0.139533907175064 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457347 chr7:142457353 synonymous SNV . 0 27 hm5C_associated_SNPs_32799 0 0 0 1 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 23bp
chr7 142457353 142457353 1 + C T SKCM 142457348 + 142457328 142457368 41 CTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGCA CTACCACCATGAATCCACTCCTGATTCTTACCTTTGTGGCA < 41bp 1 0.139229835942781 1 0.207706451416016 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457348 chr7:142457353 synonymous SNV . 0 26 hm5C_associated_SNPs_32800 0 0 0 1 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 23bp
chr7 142457353 142457353 1 + C T SKCM 142457354 + 142457334 142457374 41 CCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCT CCATGAATCCACTCCTGATTCTTACCTTTGTGGCAGCTGCT < 41bp 1 0.0586589163518838 1 0.0637375712394714 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457354 chr7:142457353 synonymous SNV . 0 20 hm5C_associated_SNPs_32801 0 0 0 1 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 23bp
chr7 142457353 142457353 1 + C T SKCM 142457358 + 142457338 142457378 41 GAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTG GAATCCACTCCTGATTCTTACCTTTGTGGCAGCTGCTCGTG < 41bp 1 0.0454477672343368 1 0.0181209146976471 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457358 chr7:142457353 synonymous SNV . 0 16 hm5C_associated_SNPs_32802 0 0 0 1 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 23bp
chr7 142457353 142457353 1 + C T SKCM 142457359 + 142457339 142457379 41 AATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTGA AATCCACTCCTGATTCTTACCTTTGTGGCAGCTGCTCGTGA < 41bp 1 0.169642162208512 1 0.470254421234131 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457359 chr7:142457353 synonymous SNV . 0 15 hm5C_associated_SNPs_32803 0 0 0 1 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 23bp
chr7 142457353 142457353 1 + C T SKCM 142457367 + 142457347 142457387 41 CCTGATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATG CCTGATTCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATG < 41bp 1 0.291523848752559 1 0.213887184858322 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457367 chr7:142457353 synonymous SNV . 0 7 hm5C_associated_SNPs_32804 0 0 0 1 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 23bp
chr7 142457353 142457353 1 + C T SKCM 142457370 + 142457350 142457390 41 GATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCC GATTCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCC < 41bp 1 0.281005418548943 1 0.145838499069214 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457370 chr7:142457353 synonymous SNV . 0 4 hm5C_associated_SNPs_32805 0 0 0 1 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 23bp
chr7 142457353 142457353 1 + C T SKCM 142457373 + 142457353 142457393 41 CCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCCTGC TCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCCTGC < 41bp 1 0.554143586042823 1 0.169555604457855 experiment 0.891712827914354 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457373 chr7:142457353 synonymous SNV . 0 1 hm5C_associated_SNPs_32806 0 0 0 1 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 23bp
chr7 128478854 128478854 1 + G A SKCM 128478838 + 128478818 128478858 41 CCCATCACCCGCAGTCCCTTCCCTGTCCATGTGTCGGAAGG CCCATCACCCGCAGTCCCTTCCCTGTCCATGTGTCGAAAGG < 41bp 1 0.0564173367999876 1 0.0329538881778717 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128478838 chr7:128478854 nonsynonymous SNV 0.961 1 37 hm5C_associated_SNPs_32809 0 0 1 0 1 FLNC chr7:128478857 5'GT 128478857 Upstream 4bp
chr3 123348395 123348395 1 + G A SKCM 123348379 + 123348359 123348399 41 GGCATCGTCGGAGATCTCATCGAATGCCTCGTCGTCGAAGT GGCATCGTCGGAGATCTCATCGAATGCCTCGTCGTCAAAGT < 41bp 1 0.513159599811284 1 0.26999232172966 experiment 0.973680800377432 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYLK ENSG00000065534 CDS Human protein_coding chr3:123348379 chr3:123348395 synonymous SNV . 0 37 hm5C_associated_SNPs_32810 0 0 0 0 1 MYLK chr3:123348341 3'AG 123348341 Downstream 55bp
chr7 116371900 116371900 1 + G A SKCM 116371902 + 116371882 116371922 41 ATCTTGGGACATCAGAGGGTCGCTTCATGCAGGTAAGTGCT ATCTTGGGACATCAGAGGATCGCTTCATGCAGGTAAGTGCT < 41bp 1 0.253262198191103 1 0.0819669365882874 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MET ENSG00000105976 CDS Human protein_coding chr7:116371902 chr7:116371900 nonsynonymous SNV 0.998 4 19 hm5C_associated_SNPs_32811 0 0 1 0 1 MET chr7:116371913 5'GT 116371913 Upstream 14bp
chr12 79689912 79689912 1 + C T SKCM 79689904 + 79689884 79689924 41 CGCCTTGGACATGGGGGGCACATCTGATCCTTACGTGAAAG CGCCTTGGACATGGGGGGCACATCTGATTCTTACGTGAAAG < 41bp 1 0.185013135295645 1 0.225269079208374 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYT1 ENSG00000067715 CDS Human protein_coding chr12:79689904 chr12:79689912 nonsynonymous SNV 0.997 4 29 hm5C_associated_SNPs_32818 0 0 0 0 1 SYT1 chr12:79689849 3'AG 79689849 Downstream 64bp
chr7 94917927 94917927 1 + C T SKCM 94917917 + 94917897 94917937 41 CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA CCGTTCAGGAATGGAGTGTGCAGCAGGTTTTTCACTGGTTA < 41bp 1 0.52455158342193 1 0.135850429534912 experiment 0.95089683315614 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917917 chr7:94917927 nonsynonymous SNV 0.984 5 31 hm5C_associated_SNPs_32819 0 0 0 0 1 PPP1R9A chr7:94917848 3'AG 94917848 Downstream 80bp
chr4 79173607 79173607 1 + G A SKCM 79173606 + 79173586 79173626 41 CTTGCAATCATGGGGAAGTCCGATGTACCCCCCAACCATGC CTTGCAATCATGGGGAAGTCCAATGTACCCCCCAACCATGC < 41bp 1 0.169577628511131 1 0.217933356761932 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79173606 chr4:79173607 nonsynonymous SNV 0.161 0 22 hm5C_associated_SNPs_32820 0 0 1 0 2 FRAS1 chr4:79173546 3'AG 79173546 Downstream 62bp
chr4 79173607 79173607 1 + G A SKCM 79173606 + 79173586 79173626 41 CTTGCAATCATGGGGAAGTCCGATGTACCCCCCAACCATGC CTTGCAATCATGGGGAAGTCCAATGTACCCCCCAACCATGC < 41bp 1 0.169577628511131 1 0.217933356761932 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79173606 chr4:79173607 nonsynonymous SNV 0.161 0 22 hm5C_associated_SNPs_32820 0 0 1 0 2 FRAS1 chr4:79173705 5'GT 79173705 Upstream 99bp
chr22 18567993 18567993 1 + C T SKCM 18567978 + 18567958 18567998 41 CTGCCCTTCAAAAAGAGTCTCCTGGCTGCCTTGATCCTCTG CTGCCCTTCAAAAAGAGTCTCCTGGCTGCCTTGATTCTCTG < 41bp 1 0.158491861540422 1 0.0920565128326416 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PEX26 ENSG00000215193 CDS Human protein_coding chr22:18567978 chr22:18567993 synonymous SNV . 0 36 hm5C_associated_SNPs_32821 0 0 1 0 1 PEX26 chr22:18568024 5'GT 18568024 Upstream 32bp
chr19 35749940 35749940 1 + G A SKCM 35749925 + 35749905 35749945 41 CCGTGGTCTCAGCCCAGGACCTCCAGGGGAACAATGAGGCC CCGTGGTCTCAGCCCAGGACCTCCAGGGGAACAATAAGGCC < 41bp 1 0.765742461777295 1 0.915842533111572 experiment 0.468515076445409 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35749925 chr19:35749940 nonsynonymous SNV 0.894 4 36 hm5C_associated_SNPs_32841 0 0 1 0 2 LSR chr19:35749848 3'AG 35749848 Downstream 93bp
chr19 35749940 35749940 1 + G A SKCM 35749925 + 35749905 35749945 41 CCGTGGTCTCAGCCCAGGACCTCCAGGGGAACAATGAGGCC CCGTGGTCTCAGCCCAGGACCTCCAGGGGAACAATAAGGCC < 41bp 1 0.765742461777295 1 0.915842533111572 experiment 0.468515076445409 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35749925 chr19:35749940 nonsynonymous SNV 0.894 4 36 hm5C_associated_SNPs_32841 0 0 1 0 2 LSR chr19:35749967 5'GT 35749967 Upstream 28bp
chr1 92495805 92495805 1 + G A SKCM 92495811 + 92495791 92495831 41 GGCGGCCCGCCCGGGAGCACCCTCCCGCGTGCCTGAGCGAC GGCGGCCCGCCCGGAAGCACCCTCCCGCGTGCCTGAGCGAC < 41bp 1 0.29158491788409 1 0.211022347211838 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPHX4 ENSG00000172031 CDS Human protein_coding chr1:92495811 chr1:92495805 nonsynonymous SNV 0.326 1 15 hm5C_associated_SNPs_32842 0 0 0 0 1 EPHX4 chr1:92495867 5'GT 92495867 Upstream 63bp
chr15 52356175 52356175 1 + C T SKCM 52356166 + 52356146 52356186 41 ACTTTGATATTGATGAAGTTCAGCTTGATCCAAGAGCTCTG ACTTTGATATTGATGAAGTTCAGCTTGATTCAAGAGCTCTG < 41bp 1 0.584323652134519 1 0.187166661024094 experiment 0.831352695730962 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52356166 chr15:52356175 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_32843 0 0 1 0 1 MAPK6 chr15:52356099 3'AG 52356099 Downstream 77bp
chr22 32217491 32217491 1 + C T SKCM 32217507 + 32217487 32217527 41 GGGCCATCCGGAGAAGCCATCCAGATCCACCACCAGACCCG GGGCTATCCGGAGAAGCCATCCAGATCCACCACCAGACCCG < 41bp 1 0.562921491606182 1 0.525304734706879 experiment 0.874157016787635 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32217507 chr22:32217491 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_32844 0 0 1 0 1 DEPDC5 chr22:32217488 3'AG 32217488 Downstream 4bp
chr15 75644680 75644680 1 + C T SKCM 75644692 + 75644672 75644712 41 ATCCCCCCCTTTGAGAAGGCCCGCTCGGTCCTGGAGGCCCT ATCCCCCCTTTTGAGAAGGCCCGCTCGGTCCTGGAGGCCCT < 41bp 1 0.146519445969863 1 0.0549529492855072 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NEIL1 ENSG00000140398 CDS Human protein_coding chr15:75644692 chr15:75644680 synonymous SNV . 0 9 hm5C_associated_SNPs_32845 0 0 1 0 2 NEIL1 chr15:75644665 3'AG 75644665 Downstream 16bp
chr15 75644680 75644680 1 + C T SKCM 75644692 + 75644672 75644712 41 ATCCCCCCCTTTGAGAAGGCCCGCTCGGTCCTGGAGGCCCT ATCCCCCCTTTTGAGAAGGCCCGCTCGGTCCTGGAGGCCCT < 41bp 1 0.146519445969863 1 0.0549529492855072 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NEIL1 ENSG00000140398 CDS Human protein_coding chr15:75644692 chr15:75644680 synonymous SNV . 0 9 hm5C_associated_SNPs_32845 0 0 1 0 2 NEIL1 chr15:75644728 5'GT 75644728 Upstream 49bp
chr7 5269331 5269331 1 + G A SKCM 5269313 + 5269293 5269333 41 CTGCCCCTTAGTCACTCAGACATACGGCGCAGCTGCAGGAA CTGCCCCTTAGTCACTCAGACATACGGCGCAGCTGCAGAAA < 41bp 1 0.116141277055206 1 0.0992255508899689 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5269313 chr7:5269331 nonsynonymous SNV 0.017 0 39 hm5C_associated_SNPs_32846 0 0 1 0 3 WIPI2 chr7:5269239 3'AG 5269239 Downstream 93bp
chr7 5269331 5269331 1 + G A SKCM 5269313 + 5269293 5269333 41 CTGCCCCTTAGTCACTCAGACATACGGCGCAGCTGCAGGAA CTGCCCCTTAGTCACTCAGACATACGGCGCAGCTGCAGAAA < 41bp 1 0.116141277055206 1 0.0992255508899689 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5269313 chr7:5269331 nonsynonymous SNV 0.017 0 39 hm5C_associated_SNPs_32846 0 0 1 0 3 WIPI2 chr7:5269336 5'GT 5269336 Upstream 6bp
chr7 5269331 5269331 1 + G A SKCM 5269313 + 5269293 5269333 41 CTGCCCCTTAGTCACTCAGACATACGGCGCAGCTGCAGGAA CTGCCCCTTAGTCACTCAGACATACGGCGCAGCTGCAGAAA < 41bp 1 0.116141277055206 1 0.0992255508899689 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5269313 chr7:5269331 nonsynonymous SNV 0.017 0 39 hm5C_associated_SNPs_32846 0 0 1 0 3 WIPI2 chr7:5269369 5'GT 5269369 Upstream 39bp
chr2 32666457 32666457 1 + C T SKCM 32666438 + 32666418 32666458 41 AATGAAAATACAAGTGGCACCCGTAAATCTGAAAACCTCCG AATGAAAATACAAGTGGCACCCGTAAATCTGAAAACCTCTG < 41bp 1 0.0437275089420826 1 0.465450286865234 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32666438 chr2:32666457 nonsynonymous SNV 0.996 3 40 hm5C_associated_SNPs_32849 0 0 1 0 2 BIRC6 chr2:32666397 3'AG 32666397 Downstream 61bp
chr2 32666457 32666457 1 + C T SKCM 32666438 + 32666418 32666458 41 AATGAAAATACAAGTGGCACCCGTAAATCTGAAAACCTCCG AATGAAAATACAAGTGGCACCCGTAAATCTGAAAACCTCTG < 41bp 1 0.0437275089420826 1 0.465450286865234 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32666438 chr2:32666457 nonsynonymous SNV 0.996 3 40 hm5C_associated_SNPs_32849 0 0 1 0 2 BIRC6 chr2:32666530 5'GT 32666530 Upstream 74bp
chr11 67052417 67052417 1 + C T SKCM 67052434 + 67052414 67052454 41 TCCCCAACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCCCG TCCTCAACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCCCG < 41bp 1 0.758329440895803 1 0.904121518135071 experiment 0.483341118208394 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052434 chr11:67052417 nonsynonymous SNV 0.998 3 4 hm5C_associated_SNPs_32851 0 0 1 0 2 GRK2 chr11:67052318 3'AG 67052318 Downstream 100bp
chr11 67052417 67052417 1 + C T SKCM 67052434 + 67052414 67052454 41 TCCCCAACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCCCG TCCTCAACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCCCG < 41bp 1 0.758329440895803 1 0.904121518135071 experiment 0.483341118208394 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052434 chr11:67052417 nonsynonymous SNV 0.998 3 4 hm5C_associated_SNPs_32851 0 0 1 0 2 GRK2 chr11:67052454 5'GT 67052454 Upstream 38bp
chr7 100484522 100484522 1 + C T SKCM 100484519 + 100484499 100484539 41 GGGGAGCAGCGGGGGCGCTCCTCCTGAGGAGCCTCCTAAGG GGGGAGCAGCGGGGGCGCTCCTCTTGAGGAGCCTCCTAAGG < 41bp 1 0.450102154738825 1 0.368268579244614 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100484519 chr7:100484522 nonsynonymous SNV 0.560 0 24 hm5C_associated_SNPs_32852 0 0 1 0 1 SRRT chr7:100484589 5'GT 100484589 Upstream 68bp
chr12 21205097 21205097 1 + G A SKCM 21205114 + 21205094 21205134 41 GATGAAAGTCAATGGGAACCCGTCTGTGGAAACAATGGAAT GATAAAAGTCAATGGGAACCCGTCTGTGGAAACAATGGAAT < 41bp 1 0.391813895157055 1 0.169859766960144 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21205114 chr12:21205097 nonsynonymous SNV 0.803 0 4 hm5C_associated_SNPs_32853 0 0 0 0 2 SLCO1B7 chr12:21205030 3'AG 21205030 Downstream 68bp
chr12 21205097 21205097 1 + G A SKCM 21205114 + 21205094 21205134 41 GATGAAAGTCAATGGGAACCCGTCTGTGGAAACAATGGAAT GATAAAAGTCAATGGGAACCCGTCTGTGGAAACAATGGAAT < 41bp 1 0.391813895157055 1 0.169859766960144 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21205114 chr12:21205097 nonsynonymous SNV 0.803 0 4 hm5C_associated_SNPs_32853 0 0 0 0 2 SLCO1B7 chr12:21205195 5'GT 21205195 Upstream 99bp
chr19 971922 971922 1 + C T SKCM 971936 + 971916 971956 41 TCTGCTCCCAACAAAGGAGGCGGCGGCGGCGGCGGCAGCAG TCTGCTTCCAACAAAGGAGGCGGCGGCGGCGGCGGCAGCAG < 41bp 1 0.781231110732053 1 0.845375657081604 experiment 0.437537778535894 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARID3A ENSG00000116017 CDS Human protein_coding chr19:971936 chr19:971922 nonsynonymous SNV 0.012 0 7 hm5C_associated_SNPs_32855 0 0 1 0 1 ARID3A chr19:971878 3'AG 971878 Downstream 45bp
chr13 111147733 111147733 1 + G A SKCM 111147745 + 111147725 111147765 41 CTCCTGGGGAAAGAGGTGACCCAGGAGAGGCCAACACCCTT CTCCTGGGAAAAGAGGTGACCCAGGAGAGGCCAACACCCTT < 41bp 1 0.168519422380266 1 0.429776519536972 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111147745 chr13:111147733 nonsynonymous SNV 0.051 3 9 hm5C_associated_SNPs_32856 0 0 0 0 2 COL4A2 chr13:111147689 3'AG 111147689 Downstream 45bp
chr13 111147733 111147733 1 + G A SKCM 111147745 + 111147725 111147765 41 CTCCTGGGGAAAGAGGTGACCCAGGAGAGGCCAACACCCTT CTCCTGGGAAAAGAGGTGACCCAGGAGAGGCCAACACCCTT < 41bp 1 0.168519422380266 1 0.429776519536972 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111147745 chr13:111147733 nonsynonymous SNV 0.051 3 9 hm5C_associated_SNPs_32856 0 0 0 0 2 COL4A2 chr13:111147814 5'GT 111147814 Upstream 82bp
chr17 40936554 40936554 1 + C T SKCM 40936572 + 40936552 40936592 41 CTCCGAGTGCCAGAATGCCGCGCAAATCTACCGCAAGGTCA CTTCGAGTGCCAGAATGCCGCGCAAATCTACCGCAAGGTCA < 41bp 1 0.659565818150963 1 0.2041055560112 experiment 0.680868363698074 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WNK4 ENSG00000126562 CDS Human protein_coding chr17:40936572 chr17:40936554 nonsynonymous SNV 0.938 4 3 hm5C_associated_SNPs_32857 0 0 1 0 1 WNK4 chr17:40936597 5'GT 40936597 Upstream 44bp
chr1 44433324 44433324 1 + C T SKCM 44433322 + 44433302 44433342 41 TCACACTGCTGTGCCGGGGTCTCCATGGCACAGATTACACA TCACACTGCTGTGCCGGGGTCTTCATGGCACAGATTACACA < 41bp 1 0.416857754960035 1 0.234738826751709 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control IPO13 ENSG00000117408 CDS Human protein_coding chr1:44433322 chr1:44433324 synonymous SNV . 0 23 hm5C_associated_SNPs_32859 0 0 1 0 1 IPO13 chr1:44433258 3'AG 44433258 Downstream 67bp
chr7 156746923 156746923 1 + C T SKCM 156746911 + 156746891 156746931 41 GCTCTCATGGGTGCCTGCGTCACTGCCTCGGCCATGCCCAG GCTCTCATGGGTGCCTGCGTCACTGCCTCGGCTATGCCCAG < 41bp 1 0.57019491897992 1 0.528562724590302 experiment 0.85961016204016 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NOM1 ENSG00000146909 CDS Human protein_coding chr7:156746911 chr7:156746923 synonymous SNV . 0 33 hm5C_associated_SNPs_32861 0 0 1 0 1 NOM1 chr7:156746992 5'GT 156746992 Upstream 70bp
chr10 12191670 12191670 1 + C T SKCM 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT AATTATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT < 41bp 1 0.524950813923404 1 0.052834153175354 experiment 0.950098372153192 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191670 synonymous SNV . 0 4 hm5C_associated_SNPs_32862 0 0 1 0 2 SEC61A2 chr10:12191594 3'AG 12191594 Downstream 77bp
chr10 12191670 12191670 1 + C T SKCM 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT AATTATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT < 41bp 1 0.524950813923404 1 0.052834153175354 experiment 0.950098372153192 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191670 synonymous SNV . 0 4 hm5C_associated_SNPs_32862 0 0 1 0 2 SEC61A2 chr10:12191725 5'GT 12191725 Upstream 56bp
chr1 32620246 32620246 1 + C T SKCM 32620232 + 32620212 32620252 41 GACAATTATCGAATGAAGAGCTATAAGAACAATGCTCTAAA GACAATTATCGAATGAAGAGCTATAAGAACAATGTTCTAAA < 41bp 1 0.215985578304445 1 0.40153631567955 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620232 chr1:32620246 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_32863 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 58bp
chr1 32620246 32620246 1 + C T SKCM 32620232 + 32620212 32620252 41 GACAATTATCGAATGAAGAGCTATAAGAACAATGCTCTAAA GACAATTATCGAATGAAGAGCTATAAGAACAATGTTCTAAA < 41bp 1 0.215985578304445 1 0.40153631567955 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620232 chr1:32620246 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_32863 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 77bp
chr1 32620246 32620246 1 + C T SKCM 32620248 + 32620228 32620268 41 AGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGAGA AGAGCTATAAGAACAATGTTCTAAACCCTGAAGAAATGAGA < 41bp 1 0.268146940854477 1 0.274502277374268 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620248 chr1:32620246 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_32864 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 58bp
chr1 32620246 32620246 1 + C T SKCM 32620248 + 32620228 32620268 41 AGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGAGA AGAGCTATAAGAACAATGTTCTAAACCCTGAAGAAATGAGA < 41bp 1 0.268146940854477 1 0.274502277374268 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620248 chr1:32620246 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_32864 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 77bp
chr1 32620246 32620246 1 + C T SKCM 32620253 + 32620233 32620273 41 TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAG TATAAGAACAATGTTCTAAACCCTGAAGAAATGAGACGAAG < 41bp 1 0.203829250054935 1 0.0966490805149078 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620253 chr1:32620246 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_32865 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 58bp
chr1 32620246 32620246 1 + C T SKCM 32620253 + 32620233 32620273 41 TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAG TATAAGAACAATGTTCTAAACCCTGAAGAAATGAGACGAAG < 41bp 1 0.203829250054935 1 0.0966490805149078 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620253 chr1:32620246 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_32865 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 77bp
chr1 32620246 32620246 1 + C T SKCM 32620254 + 32620234 32620274 41 ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAGA ATAAGAACAATGTTCTAAACCCTGAAGAAATGAGACGAAGA < 41bp 1 0.265482791358457 1 0.169824749231339 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620254 chr1:32620246 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_32866 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 58bp
chr1 32620246 32620246 1 + C T SKCM 32620254 + 32620234 32620274 41 ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAGA ATAAGAACAATGTTCTAAACCCTGAAGAAATGAGACGAAGA < 41bp 1 0.265482791358457 1 0.169824749231339 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620254 chr1:32620246 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_32866 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 77bp
chr11 67052452 67052452 1 + C T SKCM 67052434 + 67052414 67052454 41 TCCCCAACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCCCG TCCCCAACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCTCG < 41bp 1 0.728193179031826 1 0.903415322303772 experiment 0.543613641936348 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052434 chr11:67052452 nonsynonymous SNV 0.997 1 39 hm5C_associated_SNPs_32867 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 3bp
chr11 67052452 67052452 1 + C T SKCM 67052439 + 67052419 67052459 41 AACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCCCGGTAAG AACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCTCGGTAAG < 41bp 1 0.658055344677013 1 0.859665274620056 experiment 0.683889310645974 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052439 chr11:67052452 nonsynonymous SNV 0.997 1 34 hm5C_associated_SNPs_32868 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 3bp
chr11 67052452 67052452 1 + C T SKCM 67052450 + 67052430 67052470 41 GTGGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCG GTGGCGGGGCGAGGGCGAGGCCTCGGTAAGGAGCCCGTGCG < 41bp 1 0.253750034212103 1 0.690619349479675 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052450 chr11:67052452 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_32869 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 3bp
chr14 75247117 75247117 1 + C T SKCM 75247109 + 75247089 75247129 41 TGTCCTCTTTTATCTTTAGTCTGAGGACCCAGAAGAAGATG TGTCCTCTTTTATCTTTAGTCTGAGGACTCAGAAGAAGATG < 41bp 1 0.470955937381939 1 0.57405424118042 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control YLPM1 ENSG00000119596 CDS Human protein_coding chr14:75247109 chr14:75247117 nonsynonymous SNV 0.994 0 29 hm5C_associated_SNPs_32875 0 0 1 0 1 YLPM1 chr14:75247108 3'AG 75247108 Downstream 10bp
chr17 7156241 7156241 1 + G T SKCM 7156261 + 7156241 7156281 41 GAGCAAGTGCATATCCTGGGCTGTGAAGTGAGCGAGGAAGA TAGCAAGTGCATATCCTGGGCTGTGAAGTGAGCGAGGAAGA < 41bp 1 0.238048647688632 1 0.0659825503826141 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ELP5 ENSG00000170291 CDS Human protein_coding chr17:7156261 chr17:7156241 stopgain 0.997 1 1 hm5C_associated_SNPs_32876 0 0 1 0 2 ELP5 chr17:7156237 3'AG 7156237 Downstream 5bp
chr17 7156241 7156241 1 + G T SKCM 7156261 + 7156241 7156281 41 GAGCAAGTGCATATCCTGGGCTGTGAAGTGAGCGAGGAAGA TAGCAAGTGCATATCCTGGGCTGTGAAGTGAGCGAGGAAGA < 41bp 1 0.238048647688632 1 0.0659825503826141 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ELP5 ENSG00000170291 CDS Human protein_coding chr17:7156261 chr17:7156241 stopgain 0.997 1 1 hm5C_associated_SNPs_32876 0 0 1 0 2 ELP5 chr17:7156317 5'GT 7156317 Upstream 77bp
chr18 55996240 55996240 1 + G A SKCM 55996248 + 55996228 55996268 41 GACGTGTCCTCGGAGTCGGACAATAACATCAGACAGATCAA GACGTGTCCTCGAAGTCGGACAATAACATCAGACAGATCAA < 41bp 1 0.21908453804008 1 0.143678903579712 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NEDD4L ENSG00000049759 CDS Human protein_coding chr18:55996248 chr18:55996240 nonsynonymous SNV 0.611 1 13 hm5C_associated_SNPs_32877 0 0 1 0 1 NEDD4L chr18:55996227 3'AG 55996227 Downstream 14bp
chr10 7745421 7745421 1 + C T SKCM 7745438 + 7745418 7745458 41 TTTCATCTGCTTCTTTCTTTCTGAAGTATCAGGCTTCGAAA TTTTATCTGCTTCTTTCTTTCTGAAGTATCAGGCTTCGAAA < 41bp 1 0.764665245042045 1 0.820834279060364 experiment 0.470669509915911 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7745438 chr10:7745421 synonymous SNV . 0 4 hm5C_associated_SNPs_32878 0 0 1 0 1 ITIH2 chr10:7745481 5'GT 7745481 Upstream 61bp
chr11 67047159 67047159 1 + G A SKCM 67047163 + 67047143 67047183 41 AGAAGCAGGTGCCTCCGGATCTCTTCCAGGTGTGTGCCTCC AGAAGCAGGTGCCTCCAGATCTCTTCCAGGTGTGTGCCTCC < 41bp 1 0.205179768452573 1 0.695061385631561 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67047163 chr11:67047159 synonymous SNV . 0 17 hm5C_associated_SNPs_32879 0 0 1 0 2 GRK2 chr11:67047097 3'AG 67047097 Downstream 63bp
chr11 67047159 67047159 1 + G A SKCM 67047163 + 67047143 67047183 41 AGAAGCAGGTGCCTCCGGATCTCTTCCAGGTGTGTGCCTCC AGAAGCAGGTGCCTCCAGATCTCTTCCAGGTGTGTGCCTCC < 41bp 1 0.205179768452573 1 0.695061385631561 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67047163 chr11:67047159 synonymous SNV . 0 17 hm5C_associated_SNPs_32879 0 0 1 0 2 GRK2 chr11:67047171 5'GT 67047171 Upstream 13bp
chr6 29976015 29976015 1 + T C SKCM 29976024 + 29976004 29976044 41 AACATGAGGCATAACGAGGTCCTGGGTTCTGGGCTTCTACC AACATGAGGCACAACGAGGTCCTGGGTTCTGGGCTTCTACC < 41bp 1 0.209202092261789 1 0.374265551567078 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-J ENSG00000204622 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:29976024 chr6:29976015 . . 0 12 hm5C_associated_SNPs_32880 0 0 0 0 1 HLA-J chr6:29975966 3'AG 29975966 Downstream 50bp
chr6 29976015 29976015 1 + T C SKCM 29976025 + 29976005 29976045 41 ACATGAGGCATAACGAGGTCCTGGGTTCTGGGCTTCTACCC ACATGAGGCACAACGAGGTCCTGGGTTCTGGGCTTCTACCC < 41bp 1 0.534381387690077 1 0.500585615634918 experiment 0.931237224619847 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HLA-J ENSG00000204622 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:29976025 chr6:29976015 . . 0 11 hm5C_associated_SNPs_32881 0 0 0 0 1 HLA-J chr6:29975966 3'AG 29975966 Downstream 50bp
chr6 7594068 7594068 1 + C A SKCM 7594067 + 7594047 7594087 41 ATTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGTACCAT ATTGAGGAAAATGGGCTATACAAAAGAAGAAGAGGTACCAT < 41bp 1 0.718384417637991 1 0.427308738231659 experiment 0.563231164724018 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7594067 chr6:7594068 synonymous SNV . 0 22 hm5C_associated_SNPs_32882 0 0 1 2 1 SNRNP48 chr6:7594080 5'GT 7594080 Upstream 13bp
chr22 38028055 38028055 1 + C T SKCM 38028074 + 38028054 38028094 41 TCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTG TTCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTG < 41bp 1 0.399991207083228 1 0.0772422850131989 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38028074 chr22:38028055 synonymous SNV . 0 2 hm5C_associated_SNPs_32884 0 0 1 0 1 GGA1 chr22:38028003 3'AG 38028003 Downstream 53bp
chr1 26135082 26135082 1 + C T SKCM 26135073 + 26135053 26135093 41 TGCTTTCCCCCGCCCCAGGTCTCCCGCCTCGCCCTGTCCGG TGCTTTCCCCCGCCCCAGGTCTCCCGCCTTGCCCTGTCCGG < 41bp 1 0.222853311435864 1 0.137001544237137 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26135073 chr1:26135082 synonymous SNV . 0 30 hm5C_associated_SNPs_32885 0 0 0 0 1 SELENON chr1:26135071 3'AG 26135071 Downstream 12bp
chr22 38321969 38321969 1 + C T SKCM 38321955 + 38321935 38321975 41 GGGCCACCCGGAGTCCACACCCAAGTCCCTGCACCCCTGGT GGGCCACCCGGAGTCCACACCCAAGTCCCTGCACTCCTGGT < 41bp 1 0.157784989609846 1 0.151796072721481 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38321955 chr22:38321969 nonsynonymous SNV 0.998 4 35 hm5C_associated_SNPs_32886 0 0 0 0 1 MICALL1 chr22:38322050 5'GT 38322050 Upstream 82bp
chr19 10940894 10940894 1 + C T SKCM 10940900 + 10940880 10940920 41 GGCCCCCCCTGATTCCTGTTCCCGTGGGGGCAGCAGCCTCC GGCCCCCCCTGATTTCTGTTCCCGTGGGGGCAGCAGCCTCC < 41bp 1 0.392927656776533 1 0.23285299539566 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940900 chr19:10940894 nonsynonymous SNV 0.826 4 15 hm5C_associated_SNPs_32887 0 0 1 0 1 DNM2 chr19:10940803 3'AG 10940803 Downstream 92bp
chr19 10940894 10940894 1 + C T SKCM 10940901 + 10940881 10940921 41 GCCCCCCCTGATTCCTGTTCCCGTGGGGGCAGCAGCCTCCT GCCCCCCCTGATTTCTGTTCCCGTGGGGGCAGCAGCCTCCT < 41bp 1 0.284100510054914 1 0.266338586807251 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940901 chr19:10940894 nonsynonymous SNV 0.826 4 14 hm5C_associated_SNPs_32888 0 0 1 0 1 DNM2 chr19:10940803 3'AG 10940803 Downstream 92bp
chr7 99621867 99621867 1 + C T SKCM 99621875 + 99621855 99621895 41 TTTGACCTTCATCACGAGGCCACCCAGTCCCACTTCAAACA TTTGACCTTCATTACGAGGCCACCCAGTCCCACTTCAAACA < 41bp 1 0.251433194835891 1 0.050258070230484 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99621875 chr7:99621867 nonsynonymous SNV 0.994 0 13 hm5C_associated_SNPs_32890 0 0 1 0 2 ZKSCAN1 chr7:99621777 3'AG 99621777 Downstream 91bp
chr7 99621867 99621867 1 + C T SKCM 99621875 + 99621855 99621895 41 TTTGACCTTCATCACGAGGCCACCCAGTCCCACTTCAAACA TTTGACCTTCATTACGAGGCCACCCAGTCCCACTTCAAACA < 41bp 1 0.251433194835891 1 0.050258070230484 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99621875 chr7:99621867 nonsynonymous SNV 0.994 0 13 hm5C_associated_SNPs_32890 0 0 1 0 2 ZKSCAN1 chr7:99621930 5'GT 99621930 Upstream 64bp
chr17 47119686 47119686 1 + G A SKCM 47119678 + 47119658 47119698 41 CATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGA CATCGAGAATTGTTGCAGGGCCGAGCAGAAAATAATGAAGA < 41bp 1 0.127981821794614 1 0.242724657058716 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119678 chr17:47119686 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_32891 0 0 1 0 1 IGF2BP1 chr17:47119604 3'AG 47119604 Downstream 83bp
chr17 47119686 47119686 1 + G A SKCM 47119679 + 47119659 47119699 41 ATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGAA ATCGAGAATTGTTGCAGGGCCGAGCAGAAAATAATGAAGAA < 41bp 1 0.318954943911688 1 0.383515655994415 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119679 chr17:47119686 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_32892 0 0 1 0 1 IGF2BP1 chr17:47119604 3'AG 47119604 Downstream 83bp
chr19 35749931 35749931 1 + G A SKCM 35749925 + 35749905 35749945 41 CCGTGGTCTCAGCCCAGGACCTCCAGGGGAACAATGAGGCC CCGTGGTCTCAGCCCAGGACCTCCAGAGGAACAATGAGGCC < 41bp 1 0.770687029102254 1 0.857820391654968 experiment 0.458625941795492 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35749925 chr19:35749931 nonsynonymous SNV 0.982 5 27 hm5C_associated_SNPs_32893 0 0 1 0 2 LSR chr19:35749848 3'AG 35749848 Downstream 84bp
chr19 35749931 35749931 1 + G A SKCM 35749925 + 35749905 35749945 41 CCGTGGTCTCAGCCCAGGACCTCCAGGGGAACAATGAGGCC CCGTGGTCTCAGCCCAGGACCTCCAGAGGAACAATGAGGCC < 41bp 1 0.770687029102254 1 0.857820391654968 experiment 0.458625941795492 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35749925 chr19:35749931 nonsynonymous SNV 0.982 5 27 hm5C_associated_SNPs_32893 0 0 1 0 2 LSR chr19:35749967 5'GT 35749967 Upstream 37bp
chr9 132618591 132618591 1 + C T SKCM 132618609 + 132618589 132618629 41 ACCTGTCAGTCGTGTGGGGTCACCGGACCAAACCTATGGGC ACTTGTCAGTCGTGTGGGGTCACCGGACCAAACCTATGGGC < 41bp 1 0.683444331949353 1 0.448285698890686 experiment 0.633111336101294 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control USP20 ENSG00000136878 CDS Human protein_coding chr9:132618609 chr9:132618591 synonymous SNV . 0 3 hm5C_associated_SNPs_32894 0 0 1 0 2 USP20 chr9:132618586 3'AG 132618586 Downstream 6bp
chr9 132618591 132618591 1 + C T SKCM 132618609 + 132618589 132618629 41 ACCTGTCAGTCGTGTGGGGTCACCGGACCAAACCTATGGGC ACTTGTCAGTCGTGTGGGGTCACCGGACCAAACCTATGGGC < 41bp 1 0.683444331949353 1 0.448285698890686 experiment 0.633111336101294 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control USP20 ENSG00000136878 CDS Human protein_coding chr9:132618609 chr9:132618591 synonymous SNV . 0 3 hm5C_associated_SNPs_32894 0 0 1 0 2 USP20 chr9:132618639 5'GT 132618639 Upstream 49bp
chr7 128490101 128490101 1 + C T SKCM 128490100 + 128490080 128490120 41 GCGCCAGCCCTACGCTCCTCCCCGGCCCGGCGCCCGCCCCA GCGCCAGCCCTACGCTCCTCCTCGGCCCGGCGCCCGCCCCA < 41bp 1 0.712604155519675 1 0.806214213371277 experiment 0.574791688960651 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128490100 chr7:128490101 synonymous SNV . 0 22 hm5C_associated_SNPs_32895 0 0 0 0 2 FLNC chr7:128490030 3'AG 128490030 Downstream 72bp
chr7 128490101 128490101 1 + C T SKCM 128490100 + 128490080 128490120 41 GCGCCAGCCCTACGCTCCTCCCCGGCCCGGCGCCCGCCCCA GCGCCAGCCCTACGCTCCTCCTCGGCCCGGCGCCCGCCCCA < 41bp 1 0.712604155519675 1 0.806214213371277 experiment 0.574791688960651 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128490100 chr7:128490101 synonymous SNV . 0 22 hm5C_associated_SNPs_32895 0 0 0 0 2 FLNC chr7:128490128 5'GT 128490128 Upstream 28bp
chr7 128490101 128490101 1 + C T SKCM 128490107 + 128490087 128490127 41 CCCTACGCTCCTCCCCGGCCCGGCGCCCGCCCCACACACTG CCCTACGCTCCTCCTCGGCCCGGCGCCCGCCCCACACACTG < 41bp 1 0.378819110746742 1 0.350237876176834 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128490107 chr7:128490101 synonymous SNV . 0 15 hm5C_associated_SNPs_32896 0 0 0 0 2 FLNC chr7:128490030 3'AG 128490030 Downstream 72bp
chr7 128490101 128490101 1 + C T SKCM 128490107 + 128490087 128490127 41 CCCTACGCTCCTCCCCGGCCCGGCGCCCGCCCCACACACTG CCCTACGCTCCTCCTCGGCCCGGCGCCCGCCCCACACACTG < 41bp 1 0.378819110746742 1 0.350237876176834 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128490107 chr7:128490101 synonymous SNV . 0 15 hm5C_associated_SNPs_32896 0 0 0 0 2 FLNC chr7:128490128 5'GT 128490128 Upstream 28bp
chr6 7572147 7572147 1 + G A SKCM 7572161 + 7572141 7572181 41 CCAACAGAGAAAATGACAAGCAAGAAACATGGATGCTGATG CCAACAAAGAAAATGACAAGCAAGAAACATGGATGCTGATG < 41bp 1 0.533182151009719 1 0.812922239303589 experiment 0.933635697980562 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572161 chr6:7572147 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_32897 0 0 1 0 1 DSP chr6:7572075 3'AG 7572075 Downstream 73bp
chr6 36106539 36106539 1 + C T SKCM 36106530 + 36106510 36106550 41 CCCCCAGGAAGGATTTCACTCAGCTGTTCCCACGGGCCAGC CCCCCAGGAAGGATTTCACTCAGCTGTTCTCACGGGCCAGC < 41bp 1 0.78207997908807 1 0.574314594268799 experiment 0.43584004182386 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MAPK13 ENSG00000156711 CDS Human protein_coding chr6:36106530 chr6:36106539 nonsynonymous SNV 0.758 1 30 hm5C_associated_SNPs_32898 0 0 1 0 1 MAPK13 chr6:36106479 3'AG 36106479 Downstream 61bp
chr11 14865471 14865471 1 + C T SKCM 14865490 + 14865470 14865510 41 TCCTGCATTAGAATTGATGGCTCTATACGTGGCAGCTGCCA TTCTGCATTAGAATTGATGGCTCTATACGTGGCAGCTGCCA < 41bp 1 0.407592997519868 1 0.815944075584412 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE3B ENSG00000152270 CDS Human protein_coding chr11:14865490 chr11:14865471 nonsynonymous SNV 0.978 3 2 hm5C_associated_SNPs_32899 0 0 1 0 1 PDE3B chr11:14865373 3'AG 14865373 Downstream 99bp
chr17 48156850 48156850 1 + C T SKCM 48156868 + 48156848 48156888 41 ATCCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCTGGCT ATTCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCTGGCT < 41bp 1 0.0739783437725174 1 0.204240560531616 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48156868 chr17:48156850 nonsynonymous SNV 0.998 0 3 hm5C_associated_SNPs_32902 0 0 0 0 2 ITGA3 chr17:48156799 3'AG 48156799 Downstream 52bp
chr17 48156850 48156850 1 + C T SKCM 48156868 + 48156848 48156888 41 ATCCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCTGGCT ATTCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCTGGCT < 41bp 1 0.0739783437725174 1 0.204240560531616 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48156868 chr17:48156850 nonsynonymous SNV 0.998 0 3 hm5C_associated_SNPs_32902 0 0 0 0 2 ITGA3 chr17:48156921 5'GT 48156921 Upstream 72bp
chr17 48156850 48156850 1 + C T SKCM 48156870 + 48156850 48156890 41 CCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCTGGCTGC TCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCTGGCTGC < 41bp 1 0.124095373638066 1 0.136965811252594 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48156870 chr17:48156850 nonsynonymous SNV 0.998 0 1 hm5C_associated_SNPs_32903 0 0 0 0 2 ITGA3 chr17:48156799 3'AG 48156799 Downstream 52bp
chr17 48156850 48156850 1 + C T SKCM 48156870 + 48156850 48156890 41 CCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCTGGCTGC TCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCTGGCTGC < 41bp 1 0.124095373638066 1 0.136965811252594 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48156870 chr17:48156850 nonsynonymous SNV 0.998 0 1 hm5C_associated_SNPs_32903 0 0 0 0 2 ITGA3 chr17:48156921 5'GT 48156921 Upstream 72bp
chr13 26923281 26923281 1 + G C SKCM 26923264 + 26923244 26923284 41 TCTTCAAAAGGTGTTTCTGTCTCATGCTGATAGGAAGGTGT TCTTCAAAAGGTGTTTCTGTCTCATGCTGATAGGAAGCTGT < 41bp 1 0.490142575132061 1 0.325766116380692 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK8 ENSG00000132964 CDS Human protein_coding chr13:26923264 chr13:26923281 nonsynonymous SNV 0.892 2 38 hm5C_associated_SNPs_32905 0 0 1 0 2 CDK8 chr13:26923209 3'AG 26923209 Downstream 73bp
chr13 26923281 26923281 1 + G C SKCM 26923264 + 26923244 26923284 41 TCTTCAAAAGGTGTTTCTGTCTCATGCTGATAGGAAGGTGT TCTTCAAAAGGTGTTTCTGTCTCATGCTGATAGGAAGCTGT < 41bp 1 0.490142575132061 1 0.325766116380692 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK8 ENSG00000132964 CDS Human protein_coding chr13:26923264 chr13:26923281 nonsynonymous SNV 0.892 2 38 hm5C_associated_SNPs_32905 0 0 1 0 2 CDK8 chr13:26923319 5'GT 26923319 Upstream 39bp
chr2 47221588 47221588 1 + G A SKCM 47221605 + 47221585 47221625 41 CATGGGCAAGGAGGAGAGTTCTTTCGCCACTCAGGCCCTGC CATAGGCAAGGAGGAGAGTTCTTTCGCCACTCAGGCCCTGC < 41bp 1 0.0744411433564257 1 0.0338680446147919 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47221605 chr2:47221588 nonsynonymous SNV 1.000 0 4 hm5C_associated_SNPs_32906 0 0 1 0 2 TTC7A chr2:47221496 3'AG 47221496 Downstream 93bp
chr2 47221588 47221588 1 + G A SKCM 47221605 + 47221585 47221625 41 CATGGGCAAGGAGGAGAGTTCTTTCGCCACTCAGGCCCTGC CATAGGCAAGGAGGAGAGTTCTTTCGCCACTCAGGCCCTGC < 41bp 1 0.0744411433564257 1 0.0338680446147919 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47221605 chr2:47221588 nonsynonymous SNV 1.000 0 4 hm5C_associated_SNPs_32906 0 0 1 0 2 TTC7A chr2:47221653 5'GT 47221653 Upstream 66bp
chrX 150156315 150156315 1 + G A SKCM 150156311 + 150156291 150156331 41 AAAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGG AAAGGGTCCTGCTAAAGTTGCCCGAAAAAAGGTGGAAGAGG < 41bp 1 0.623694986772869 1 0.17807924747467 experiment 0.752610026454261 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156311 chrX:150156315 synonymous SNV . 0 25 hm5C_associated_SNPs_32907 0 0 1 0 1 HMGB3 chrX:150156250 3'AG 150156250 Downstream 66bp
chrX 150156315 150156315 1 + G A SKCM 150156312 + 150156292 150156332 41 AAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGA AAGGGTCCTGCTAAAGTTGCCCGAAAAAAGGTGGAAGAGGA < 41bp 1 0.426515736863068 1 0.532367885112762 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156312 chrX:150156315 synonymous SNV . 0 24 hm5C_associated_SNPs_32908 0 0 1 0 1 HMGB3 chrX:150156250 3'AG 150156250 Downstream 66bp
chrX 150156315 150156315 1 + G A SKCM 150156313 + 150156293 150156333 41 AGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGAA AGGGTCCTGCTAAAGTTGCCCGAAAAAAGGTGGAAGAGGAA < 41bp 1 0.555510741713842 1 0.558401465415955 experiment 0.888978516572317 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156313 chrX:150156315 synonymous SNV . 0 23 hm5C_associated_SNPs_32909 0 0 1 0 1 HMGB3 chrX:150156250 3'AG 150156250 Downstream 66bp
chr10 5147811 5147811 1 + G A SKCM 5147798 + 5147778 5147818 41 TTCTGATAGGTTTTTGAGTTCCAGTTGACTGCAGAGGACAT TTCTGATAGGTTTTTGAGTTCCAGTTGACTGCAAAGGACAT < 41bp 1 0.165336033963827 1 0.141538679599762 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1C3 ENSG00000196139 CDS Human protein_coding chr10:5147798 chr10:5147811 nonsynonymous SNV 0.523 2 34 hm5C_associated_SNPs_32912 0 0 1 0 2 AKR1C3 chr10:5147787 3'AG 5147787 Downstream 25bp
chr10 5147811 5147811 1 + G A SKCM 5147798 + 5147778 5147818 41 TTCTGATAGGTTTTTGAGTTCCAGTTGACTGCAGAGGACAT TTCTGATAGGTTTTTGAGTTCCAGTTGACTGCAAAGGACAT < 41bp 1 0.165336033963827 1 0.141538679599762 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1C3 ENSG00000196139 CDS Human protein_coding chr10:5147798 chr10:5147811 nonsynonymous SNV 0.523 2 34 hm5C_associated_SNPs_32912 0 0 1 0 2 AKR1C3 chr10:5147869 5'GT 5147869 Upstream 59bp
chr13 24242875 24242875 1 + C T SKCM 24242887 + 24242867 24242907 41 CTTCGGATCCCTCACGCAGTCCATCTGTGGCGAGTTTTCAG CTTCGGATTCCTCACGCAGTCCATCTGTGGCGAGTTTTCAG < 41bp 1 0.119351776901287 1 0.0899239182472229 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24242887 chr13:24242875 nonsynonymous SNV 0.023 4 9 hm5C_associated_SNPs_32913 0 0 1 0 1 TNFRSF19 chr13:24242831 3'AG 24242831 Downstream 45bp
chr19 42857946 42857946 1 + C T SKCM 42857961 + 42857941 42857981 41 GCTTTCGGGAGTGTGGGGGTCGCGCCCTCCTCACCAACGTG GCTTTTGGGAGTGTGGGGGTCGCGCCCTCCTCACCAACGTG < 41bp 1 0.242957479665618 1 0.207087248563766 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42857961 chr19:42857946 nonsynonymous SNV 0.972 3 6 hm5C_associated_SNPs_32914 0 0 0 0 1 MEGF8 chr19:42857927 3'AG 42857927 Downstream 20bp
chr17 55194271 55194271 1 + G A SKCM 55194253 + 55194233 55194273 41 CACCCTGCCGTTTCAGGGAGCAGAAGTCCTTCTGGACAGTG CACCCTGCCGTTTCAGGGAGCAGAAGTCCTTCTGGACAATG < 41bp 1 0.490021497675383 1 0.393924355506897 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194253 chr17:55194271 nonsynonymous SNV 0.922 1 39 hm5C_associated_SNPs_32916 0 0 1 0 2 AKAP1 chr17:55194221 3'AG 55194221 Downstream 51bp
chr17 55194271 55194271 1 + G A SKCM 55194253 + 55194233 55194273 41 CACCCTGCCGTTTCAGGGAGCAGAAGTCCTTCTGGACAGTG CACCCTGCCGTTTCAGGGAGCAGAAGTCCTTCTGGACAATG < 41bp 1 0.490021497675383 1 0.393924355506897 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194253 chr17:55194271 nonsynonymous SNV 0.922 1 39 hm5C_associated_SNPs_32916 0 0 1 0 2 AKAP1 chr17:55194288 5'GT 55194288 Upstream 18bp
chr19 5667165 5667165 1 + C T SKCM 5667169 + 5667149 5667189 41 GGGCCGGGGGCTGCCTCCTCCCCCCAGGTTTGTGTCCCACA GGGCCGGGGGCTGCCTTCTCCCCCCAGGTTTGTGTCCCACA < 41bp 1 0.266537956985277 1 0.246707260608673 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SAFB ENSG00000160633 CDS Human protein_coding chr19:5667169 chr19:5667165 nonsynonymous SNV 0.998 2 17 hm5C_associated_SNPs_32917 0 0 1 0 1 SAFB chr19:5667175 5'GT 5667175 Upstream 11bp
chr19 5667165 5667165 1 + C T SKCM 5667171 + 5667151 5667191 41 GCCGGGGGCTGCCTCCTCCCCCCAGGTTTGTGTCCCACACC GCCGGGGGCTGCCTTCTCCCCCCAGGTTTGTGTCCCACACC < 41bp 1 0.537443924250458 1 0.318094551563263 experiment 0.925112151499084 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SAFB ENSG00000160633 CDS Human protein_coding chr19:5667171 chr19:5667165 nonsynonymous SNV 0.998 2 15 hm5C_associated_SNPs_32918 0 0 1 0 1 SAFB chr19:5667175 5'GT 5667175 Upstream 11bp
chr19 5667165 5667165 1 + C T SKCM 5667172 + 5667152 5667192 41 CCGGGGGCTGCCTCCTCCCCCCAGGTTTGTGTCCCACACCC CCGGGGGCTGCCTTCTCCCCCCAGGTTTGTGTCCCACACCC < 41bp 1 0.641107142722661 1 0.509437203407288 experiment 0.717785714554679 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SAFB ENSG00000160633 CDS Human protein_coding chr19:5667172 chr19:5667165 nonsynonymous SNV 0.998 2 14 hm5C_associated_SNPs_32919 0 0 1 0 1 SAFB chr19:5667175 5'GT 5667175 Upstream 11bp
chr19 5667165 5667165 1 + C T SKCM 5667173 + 5667153 5667193 41 CGGGGGCTGCCTCCTCCCCCCAGGTTTGTGTCCCACACCCG CGGGGGCTGCCTTCTCCCCCCAGGTTTGTGTCCCACACCCG < 41bp 1 0.697696260586262 1 0.616830348968506 experiment 0.604607478827475 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SAFB ENSG00000160633 CDS Human protein_coding chr19:5667173 chr19:5667165 nonsynonymous SNV 0.998 2 13 hm5C_associated_SNPs_32920 0 0 1 0 1 SAFB chr19:5667175 5'GT 5667175 Upstream 11bp
chr21 47864701 47864701 1 + G T SKCM 47864706 + 47864686 47864726 41 ATTCACCATTTAGAAGTGATCCAGCAAAGATTGGGAGGGGT ATTCACCATTTAGAATTGATCCAGCAAAGATTGGGAGGGGT < 41bp 1 0.046869236458306 1 0.400844067335129 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47864706 chr21:47864701 nonsynonymous SNV 0.457 0 16 hm5C_associated_SNPs_32921 0 0 1 0 2 PCNT chr21:47864607 3'AG 47864607 Downstream 95bp
chr21 47864701 47864701 1 + G T SKCM 47864706 + 47864686 47864726 41 ATTCACCATTTAGAAGTGATCCAGCAAAGATTGGGAGGGGT ATTCACCATTTAGAATTGATCCAGCAAAGATTGGGAGGGGT < 41bp 1 0.046869236458306 1 0.400844067335129 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47864706 chr21:47864701 nonsynonymous SNV 0.457 0 16 hm5C_associated_SNPs_32921 0 0 1 0 2 PCNT chr21:47864734 5'GT 47864734 Upstream 34bp
chr18 3457419 3457419 1 + G A SKCM 3457403 + 3457383 3457423 41 CGCCCGCCGCAGGCTCCTCCCTGACATGCTGAGAAAGGATG CGCCCGCCGCAGGCTCCTCCCTGACATGCTGAGAAAAGATG < 41bp 1 0.266250684225128 1 0.0790799260139465 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control TGIF1 ENSG00000177426 CDS Human protein_coding chr18:3457403 chr18:3457419 synonymous SNV . 0 37 hm5C_associated_SNPs_32922 0 0 0 0 1 TGIF1 chr18:3457363 3'AG 3457363 Downstream 57bp
chr12 6618900 6618900 1 + C T SKCM 6618914 + 6618894 6618934 41 GCCTTTCGAGCTCAGGGGCCCCTGGCTATGCTGCAGCACTT GCCTTTTGAGCTCAGGGGCCCCTGGCTATGCTGCAGCACTT < 41bp 1 0.120623796889369 1 0.124195516109467 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6618914 chr12:6618900 stopgain 0.995 1 7 hm5C_associated_SNPs_32923 0 0 1 0 2 NCAPD2 chr12:6618883 3'AG 6618883 Downstream 18bp
chr12 6618900 6618900 1 + C T SKCM 6618914 + 6618894 6618934 41 GCCTTTCGAGCTCAGGGGCCCCTGGCTATGCTGCAGCACTT GCCTTTTGAGCTCAGGGGCCCCTGGCTATGCTGCAGCACTT < 41bp 1 0.120623796889369 1 0.124195516109467 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6618914 chr12:6618900 stopgain 0.995 1 7 hm5C_associated_SNPs_32923 0 0 1 0 2 NCAPD2 chr12:6618958 5'GT 6618958 Upstream 59bp
chr10 17277874 17277874 1 + C T SKCM 17277858 + 17277838 17277878 41 TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTTCCTG < 41bp 1 0.0623112591989138 1 0.489414632320404 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277858 chr10:17277874 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_32924 0 0 1 0 2 VIM chr10:17277845 3'AG 17277845 Downstream 30bp
chr10 17277874 17277874 1 + C T SKCM 17277858 + 17277838 17277878 41 TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTTCCTG < 41bp 1 0.0623112591989138 1 0.489414632320404 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277858 chr10:17277874 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_32924 0 0 1 0 2 VIM chr10:17277888 5'GT 17277888 Upstream 15bp
chr10 17271885 17271885 1 + G A SKCM 17271865 + 17271845 17271885 41 GGCAAGTCGCGCCTGGGGGACCTCTACGAGGAGGAGATGCG GGCAAGTCGCGCCTGGGGGACCTCTACGAGGAGGAGATGCA < 41bp 1 0.0577990106069 1 0.13743394613266 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17271865 chr10:17271885 nonsynonymous SNV 1.000 5 41 hm5C_associated_SNPs_32926 0 0 1 0 1 VIM chr10:17271984 5'GT 17271984 Upstream 100bp
chr10 17271885 17271885 1 + G A SKCM 17271866 + 17271846 17271886 41 GCAAGTCGCGCCTGGGGGACCTCTACGAGGAGGAGATGCGG GCAAGTCGCGCCTGGGGGACCTCTACGAGGAGGAGATGCAG < 41bp 1 0.719294012929773 1 0.339859485626221 experiment 0.561411974140454 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17271866 chr10:17271885 nonsynonymous SNV 1.000 5 40 hm5C_associated_SNPs_32927 0 0 1 0 1 VIM chr10:17271984 5'GT 17271984 Upstream 100bp
chr10 17271886 17271886 1 + G A SKCM 17271866 + 17271846 17271886 41 GCAAGTCGCGCCTGGGGGACCTCTACGAGGAGGAGATGCGG GCAAGTCGCGCCTGGGGGACCTCTACGAGGAGGAGATGCGA < 41bp 1 0.707447373532054 1 0.363463640213013 experiment 0.585105252935892 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17271866 chr10:17271886 synonymous SNV . 0 41 hm5C_associated_SNPs_32928 0 0 1 0 1 VIM chr10:17271984 5'GT 17271984 Upstream 99bp
chr10 135233559 135233559 1 + C T SKCM 135233540 + 135233520 135233560 41 CGTCCCCCAGGTAACGTGAACATTATTCAGCCTAACTATCC CGTCCCCCAGGTAACGTGAACATTATTCAGCCTAACTATTC < 41bp 1 0.200495320583192 1 0.00833305716514587 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTG1 ENSG00000148824;ENSG00000254536 CDS Human other chr10:135233540 chr10:135233559 nonsynonymous SNV 0.000 0 40 hm5C_associated_SNPs_32930 0 0 1 0 1 MTG1 chr10:135233530 3'AG 135233530 Downstream 30bp
chr17 46940288 46940288 1 + A G SKCM 46940294 + 46940274 46940314 41 GCCCCTTTGTTTCAATTGTCCAATTTGTGACAAGATCTTCC GCCCCTTTGTTTCAGTTGTCCAATTTGTGACAAGATCTTCC < 41bp 1 0.130819593203424 1 0.247120499610901 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CALCOCO2 ENSG00000136436 CDS Human protein_coding chr17:46940294 chr17:46940288 nonsynonymous SNV 0.848 0 15 hm5C_associated_SNPs_32931 0 0 1 0 1 CALCOCO2 chr17:46940200 3'AG 46940200 Downstream 89bp
chr7 142458473 142458473 1 + C T SKCM 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTCCCTTACCAGGTGTCCC < 41bp 1 0.144194330003626 1 0.219684571027756 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458473 synonymous SNV . 0 28 hm5C_associated_SNPs_32935 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 68bp
chr7 142458473 142458473 1 + C T SKCM 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTCCCTTACCAGGTGTCCC < 41bp 1 0.144194330003626 1 0.219684571027756 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458473 synonymous SNV . 0 28 hm5C_associated_SNPs_32935 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 93bp
chr7 142458473 142458473 1 + C T SKCM 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTCCCTTACCAGGTGTCCCTGAA < 41bp 1 0.0597582124035614 1 0.0722103118896484 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458473 synonymous SNV . 0 24 hm5C_associated_SNPs_32936 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 68bp
chr7 142458473 142458473 1 + C T SKCM 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTCCCTTACCAGGTGTCCCTGAA < 41bp 1 0.0597582124035614 1 0.0722103118896484 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458473 synonymous SNV . 0 24 hm5C_associated_SNPs_32936 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 93bp
chr7 142458473 142458473 1 + C T SKCM 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTCCCTTACCAGGTGTCCCTGAAT < 41bp 1 0.0369182531844875 1 0.0275020599365234 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458473 synonymous SNV . 0 23 hm5C_associated_SNPs_32937 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 68bp
chr7 142458473 142458473 1 + C T SKCM 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTCCCTTACCAGGTGTCCCTGAAT < 41bp 1 0.0369182531844875 1 0.0275020599365234 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458473 synonymous SNV . 0 23 hm5C_associated_SNPs_32937 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 93bp
chr7 142458473 142458473 1 + C T SKCM 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTCCCTTACCAGGTGTCCCTGAATT < 41bp 1 0.0420020308745517 1 0.0287684798240662 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458473 synonymous SNV . 0 22 hm5C_associated_SNPs_32938 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 68bp
chr7 142458473 142458473 1 + C T SKCM 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTCCCTTACCAGGTGTCCCTGAATT < 41bp 1 0.0420020308745517 1 0.0287684798240662 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458473 synonymous SNV . 0 22 hm5C_associated_SNPs_32938 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 93bp
chr7 142458473 142458473 1 + C T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCTTACCAGGTGTCCCTGAATTCTGG < 41bp 1 0.287118715086589 1 0.343545079231262 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458473 synonymous SNV . 0 18 hm5C_associated_SNPs_32939 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 68bp
chr7 142458473 142458473 1 + C T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCTTACCAGGTGTCCCTGAATTCTGG < 41bp 1 0.287118715086589 1 0.343545079231262 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458473 synonymous SNV . 0 18 hm5C_associated_SNPs_32939 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 93bp
chr7 142458473 142458473 1 + C T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCTTACCAGGTGTCCCTGAATTCTGGC < 41bp 1 0.678757067412848 1 0.922478318214417 experiment 0.642485865174303 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458473 synonymous SNV . 0 17 hm5C_associated_SNPs_32940 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 68bp
chr7 142458473 142458473 1 + C T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCTTACCAGGTGTCCCTGAATTCTGGC < 41bp 1 0.678757067412848 1 0.922478318214417 experiment 0.642485865174303 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458473 synonymous SNV . 0 17 hm5C_associated_SNPs_32940 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 93bp
chr7 142458473 142458473 1 + C T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCTTACCAGGTGTCCCTGAATTCTGGCTACCACT < 41bp 1 0.109063859105772 1 0.0459425151348114 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458473 synonymous SNV . 0 10 hm5C_associated_SNPs_32941 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 68bp
chr7 142458473 142458473 1 + C T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCTTACCAGGTGTCCCTGAATTCTGGCTACCACT < 41bp 1 0.109063859105772 1 0.0459425151348114 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458473 synonymous SNV . 0 10 hm5C_associated_SNPs_32941 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 93bp
chr7 142458473 142458473 1 + C T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCTTACCAGGTGTCCCTGAATTCTGGCTACCACTT < 41bp 1 0.316179085305892 1 0.0795203149318695 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458473 synonymous SNV . 0 9 hm5C_associated_SNPs_32942 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 68bp
chr7 142458473 142458473 1 + C T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCTTACCAGGTGTCCCTGAATTCTGGCTACCACTT < 41bp 1 0.316179085305892 1 0.0795203149318695 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458473 synonymous SNV . 0 9 hm5C_associated_SNPs_32942 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 93bp
chr7 142458473 142458473 1 + C T SKCM 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCTTACCAGGTGTCCCTGAATTCTGGCTACCACTTC < 41bp 1 0.747439741298351 1 0.366308867931366 experiment 0.505120517403298 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458473 synonymous SNV . 0 8 hm5C_associated_SNPs_32943 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 68bp
chr7 142458473 142458473 1 + C T SKCM 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCTTACCAGGTGTCCCTGAATTCTGGCTACCACTTC < 41bp 1 0.747439741298351 1 0.366308867931366 experiment 0.505120517403298 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458473 synonymous SNV . 0 8 hm5C_associated_SNPs_32943 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 93bp
chr7 142458473 142458473 1 + C T SKCM 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG TTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG < 41bp 1 0.785957397987564 1 0.712604165077209 experiment 0.428085204024872 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458473 synonymous SNV . 0 1 hm5C_associated_SNPs_32944 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 68bp
chr7 142458473 142458473 1 + C T SKCM 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG TTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG < 41bp 1 0.785957397987564 1 0.712604165077209 experiment 0.428085204024872 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458473 synonymous SNV . 0 1 hm5C_associated_SNPs_32944 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 93bp
chr16 30664151 30664151 1 + C G SKCM 30664142 + 30664122 30664162 41 TGCCTCGCCACCCCGGCAGGCCGGGTGGTCCTCGCAGGCCA TGCCTCGCCACCCCGGCAGGCCGGGTGGTGCTCGCAGGCCA < 41bp 1 0.709427119235254 1 0.632065057754517 experiment 0.581145761529492 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRR14 ENSG00000156858 CDS Human protein_coding chr16:30664142 chr16:30664151 nonsynonymous SNV 0.242 0 30 hm5C_associated_SNPs_32945 0 0 1 0 1 PRR14 chr16:30664163 5'GT 30664163 Upstream 13bp
chr6 150290481 150290481 1 + A T SKCM 150290478 + 150290458 150290498 41 AATTTTTGATGTACTGGGAACAAATGCTGGATCCAACAAGT AATTTTTGATGTACTGGGAACAATTGCTGGATCCAACAAGT < 41bp 1 0.1543164359069 1 0.287184536457062 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ULBP1 ENSG00000111981 CDS Human protein_coding chr6:150290478 chr6:150290481 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_32946 0 0 0 0 1 ULBP1 chr6:150290496 5'GT 150290496 Upstream 16bp
chrX 147022103 147022103 1 + A G SKCM 147022104 + 147022084 147022124 41 TTCTTTTTCAGGGTATGGTACCATTTGTTTTTGTGGGAACA TTCTTTTTCAGGGTATGGTGCCATTTGTTTTTGTGGGAACA < 41bp 1 0.0408652713110458 1 0.0816825032234192 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FMR1 ENSG00000102081 CDS Human protein_coding chrX:147022104 chrX:147022103 synonymous SNV . 0 20 hm5C_associated_SNPs_32948 0 0 1 0 1 FMR1 chrX:147022181 5'GT 147022181 Upstream 79bp
chr7 142458472 142458472 1 + C T SKCM 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCT < 41bp 1 0.380649722675686 1 0.276246905326843 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458472 nonsynonymous SNV 0.950 5 41 hm5C_associated_SNPs_32953 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 67bp
chr7 142458472 142458472 1 + C T SKCM 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCT < 41bp 1 0.380649722675686 1 0.276246905326843 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458472 nonsynonymous SNV 0.950 5 41 hm5C_associated_SNPs_32953 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 94bp
chr7 142458472 142458472 1 + C T SKCM 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTCCTCTACCAGGTGTCCC < 41bp 1 0.197189946730647 1 0.156828761100769 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458472 nonsynonymous SNV 0.950 5 27 hm5C_associated_SNPs_32954 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 67bp
chr7 142458472 142458472 1 + C T SKCM 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTCCTCTACCAGGTGTCCC < 41bp 1 0.197189946730647 1 0.156828761100769 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458472 nonsynonymous SNV 0.950 5 27 hm5C_associated_SNPs_32954 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 94bp
chr7 142458472 142458472 1 + C T SKCM 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTCCTCTACCAGGTGTCCCTGAA < 41bp 1 0.0469247433680245 1 0.193209439516068 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458472 nonsynonymous SNV 0.950 5 23 hm5C_associated_SNPs_32955 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 67bp
chr7 142458472 142458472 1 + C T SKCM 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTCCTCTACCAGGTGTCCCTGAA < 41bp 1 0.0469247433680245 1 0.193209439516068 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458472 nonsynonymous SNV 0.950 5 23 hm5C_associated_SNPs_32955 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 94bp
chr7 142458472 142458472 1 + C T SKCM 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTCCTCTACCAGGTGTCCCTGAAT < 41bp 1 0.275131465410388 1 0.84273636341095 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458472 nonsynonymous SNV 0.950 5 22 hm5C_associated_SNPs_32956 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 67bp
chr7 142458472 142458472 1 + C T SKCM 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTCCTCTACCAGGTGTCCCTGAAT < 41bp 1 0.275131465410388 1 0.84273636341095 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458472 nonsynonymous SNV 0.950 5 22 hm5C_associated_SNPs_32956 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 94bp
chr7 142458472 142458472 1 + C T SKCM 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTCCTCTACCAGGTGTCCCTGAATTC < 41bp 1 0.189385629106869 1 0.130478143692017 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458472 nonsynonymous SNV 0.950 5 20 hm5C_associated_SNPs_32957 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 67bp
chr7 142458472 142458472 1 + C T SKCM 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTCCTCTACCAGGTGTCCCTGAATTC < 41bp 1 0.189385629106869 1 0.130478143692017 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458472 nonsynonymous SNV 0.950 5 20 hm5C_associated_SNPs_32957 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 94bp
chr7 142458472 142458472 1 + C T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCTCTACCAGGTGTCCCTGAATTCTGG < 41bp 1 0.256169391229861 1 0.227031737565994 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458472 nonsynonymous SNV 0.950 5 17 hm5C_associated_SNPs_32958 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 67bp
chr7 142458472 142458472 1 + C T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCTCTACCAGGTGTCCCTGAATTCTGG < 41bp 1 0.256169391229861 1 0.227031737565994 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458472 nonsynonymous SNV 0.950 5 17 hm5C_associated_SNPs_32958 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 94bp
chr7 142458472 142458472 1 + C T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCTCTACCAGGTGTCCCTGAATTCTGGC < 41bp 1 0.645729166545285 1 0.915310263633728 experiment 0.70854166690943 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458472 nonsynonymous SNV 0.950 5 16 hm5C_associated_SNPs_32959 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 67bp
chr7 142458472 142458472 1 + C T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCTCTACCAGGTGTCCCTGAATTCTGGC < 41bp 1 0.645729166545285 1 0.915310263633728 experiment 0.70854166690943 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458472 nonsynonymous SNV 0.950 5 16 hm5C_associated_SNPs_32959 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 94bp
chr7 142458472 142458472 1 + C T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCTCTACCAGGTGTCCCTGAATTCTGGCTACCACT < 41bp 1 0.106601191043875 1 0.0650842785835266 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458472 nonsynonymous SNV 0.950 5 9 hm5C_associated_SNPs_32960 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 67bp
chr7 142458472 142458472 1 + C T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCTCTACCAGGTGTCCCTGAATTCTGGCTACCACT < 41bp 1 0.106601191043875 1 0.0650842785835266 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458472 nonsynonymous SNV 0.950 5 9 hm5C_associated_SNPs_32960 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 94bp
chr7 142458472 142458472 1 + C T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCTCTACCAGGTGTCCCTGAATTCTGGCTACCACTT < 41bp 1 0.334667259850817 1 0.0990870893001556 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458472 nonsynonymous SNV 0.950 5 8 hm5C_associated_SNPs_32961 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 67bp
chr7 142458472 142458472 1 + C T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCTCTACCAGGTGTCCCTGAATTCTGGCTACCACTT < 41bp 1 0.334667259850817 1 0.0990870893001556 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458472 nonsynonymous SNV 0.950 5 8 hm5C_associated_SNPs_32961 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 94bp
chr7 142458472 142458472 1 + C T SKCM 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCTCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC < 41bp 1 0.705268103115731 1 0.385732442140579 experiment 0.589463793768537 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458472 nonsynonymous SNV 0.950 5 7 hm5C_associated_SNPs_32962 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 67bp
chr7 142458472 142458472 1 + C T SKCM 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCTCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC < 41bp 1 0.705268103115731 1 0.385732442140579 experiment 0.589463793768537 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458472 nonsynonymous SNV 0.950 5 7 hm5C_associated_SNPs_32962 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 94bp
chr3 196533549 196533549 1 + A G SKCM 196533533 + 196533513 196533553 41 ACTGCTCCTCCCGTTATTGCCCCGCGACCGGATCATACGAA ACTGCTCCTCCCGTTATTGCCCCGCGACCGGATCATGCGAA < 41bp 1 0.514939403759917 1 0.754564821720123 experiment 0.970121192480165 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAK2 ENSG00000180370 CDS Human protein_coding chr3:196533533 chr3:196533549 nonsynonymous SNV 0.998 3 37 hm5C_associated_SNPs_32963 0 0 1 0 2 PAK2 chr3:196533450 3'AG 196533450 Downstream 100bp
chr3 196533549 196533549 1 + A G SKCM 196533533 + 196533513 196533553 41 ACTGCTCCTCCCGTTATTGCCCCGCGACCGGATCATACGAA ACTGCTCCTCCCGTTATTGCCCCGCGACCGGATCATGCGAA < 41bp 1 0.514939403759917 1 0.754564821720123 experiment 0.970121192480165 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAK2 ENSG00000180370 CDS Human protein_coding chr3:196533533 chr3:196533549 nonsynonymous SNV 0.998 3 37 hm5C_associated_SNPs_32963 0 0 1 0 2 PAK2 chr3:196533557 5'GT 196533557 Upstream 9bp
chr6 37141788 37141788 1 + C T SKCM 37141808 + 37141788 37141828 41 CATGGATGCAAGATGTTCTCCTGCCCCAGGAAACTGCTGAG TATGGATGCAAGATGTTCTCCTGCCCCAGGAAACTGCTGAG < 41bp 1 0.316289126096278 1 0.284970641136169 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PIM1 ENSG00000137193 CDS Human protein_coding chr6:37141808 chr6:37141788 nonsynonymous SNV 0.980 3 1 hm5C_associated_SNPs_32964 0 0 1 0 1 PIM1 chr6:37141710 3'AG 37141710 Downstream 79bp
chr19 14512300 14512300 1 + C T SKCM 14512320 + 14512300 14512340 41 CTTGAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA TTTGAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA < 41bp 1 0.268190440777002 1 0.0456079244613647 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14512320 chr19:14512300 nonsynonymous SNV 0.004 3 1 hm5C_associated_SNPs_32965 0 0 1 0 1 ADGRE5 chr19:14512375 5'GT 14512375 Upstream 76bp
chr19 34959991 34959991 1 + T C SKCM 34959978 + 34959958 34959998 41 TGACGTTCTCATAGTTGATTCAGATGAAGAAGATTCTTCAA TGACGTTCTCATAGTTGATTCAGATGAAGAAGACTCTTCAA < 41bp 1 0.492127335758123 1 0.314709663391113 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBA2 ENSG00000126261 CDS Human protein_coding chr19:34959978 chr19:34959991 synonymous SNV . 0 34 hm5C_associated_SNPs_32968 0 0 1 0 1 UBA2 chr19:34959945 3'AG 34959945 Downstream 47bp
chr17 57644043 57644043 1 + G A SKCM 57644036 + 57644016 57644056 41 AGGAACTACTCCAACTTTTCCTATTCAGAAACAAAGAAAAA AGGAACTACTCCAACTTTTCCTATTCAAAAACAAAGAAAAA < 41bp 1 0.0912366310786778 1 0.209234088659286 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX40 ENSG00000108406 CDS Human protein_coding chr17:57644036 chr17:57644043 synonymous SNV . 0 28 hm5C_associated_SNPs_32969 0 0 1 0 2 DHX40 chr17:57643988 3'AG 57643988 Downstream 56bp
chr17 57644043 57644043 1 + G A SKCM 57644036 + 57644016 57644056 41 AGGAACTACTCCAACTTTTCCTATTCAGAAACAAAGAAAAA AGGAACTACTCCAACTTTTCCTATTCAAAAACAAAGAAAAA < 41bp 1 0.0912366310786778 1 0.209234088659286 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX40 ENSG00000108406 CDS Human protein_coding chr17:57644036 chr17:57644043 synonymous SNV . 0 28 hm5C_associated_SNPs_32969 0 0 1 0 2 DHX40 chr17:57644070 5'GT 57644070 Upstream 28bp
chr2 232035369 232035369 1 + C T SKCM 232035362 + 232035342 232035382 41 ACCTGTGGCAGCACATGGCCCAAAAATCGAGGAGGAGGAAC ACCTGTGGCAGCACATGGCCCAAAAATTGAGGAGGAGGAAC < 41bp 1 0.607097675975384 1 0.143536269664764 experiment 0.785804648049232 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMD1 ENSG00000173692 CDS Human protein_coding chr2:232035362 chr2:232035369 synonymous SNV . 0 28 hm5C_associated_SNPs_32970 0 0 1 0 2 PSMD1 chr2:232035280 3'AG 232035280 Downstream 90bp
chr2 232035369 232035369 1 + C T SKCM 232035362 + 232035342 232035382 41 ACCTGTGGCAGCACATGGCCCAAAAATCGAGGAGGAGGAAC ACCTGTGGCAGCACATGGCCCAAAAATTGAGGAGGAGGAAC < 41bp 1 0.607097675975384 1 0.143536269664764 experiment 0.785804648049232 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMD1 ENSG00000173692 CDS Human protein_coding chr2:232035362 chr2:232035369 synonymous SNV . 0 28 hm5C_associated_SNPs_32970 0 0 1 0 2 PSMD1 chr2:232035435 5'GT 232035435 Upstream 67bp
chr9 74817548 74817548 1 + G A SKCM 74817563 + 74817543 74817583 41 TTGCTGGAAGTAGCATAGACCTGCCACTCTTGGAGTGGCTG TTGCTAGAAGTAGCATAGACCTGCCACTCTTGGAGTGGCTG < 41bp 1 0.258638193838469 1 0.0568445920944214 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GDA ENSG00000119125 CDS Human protein_coding chr9:74817563 chr9:74817548 nonsynonymous SNV 0.941 5 6 hm5C_associated_SNPs_32971 0 0 0 0 1 GDA chr9:74817487 3'AG 74817487 Downstream 62bp
chr16 50813885 50813885 1 + C T SKCM 50813901 + 50813881 50813921 41 CCTCCTTTCTATGGGGTAATCCGTTGGATCGGTCAGCCACC CCTCTTTTCTATGGGGTAATCCGTTGGATCGGTCAGCCACC < 41bp 1 0.318069828422271 1 0.314236968755722 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CYLD ENSG00000083799 CDS Human protein_coding chr16:50813901 chr16:50813885 nonsynonymous SNV 0.976 4 5 hm5C_associated_SNPs_32972 0 0 0 0 1 CYLD chr16:50813955 5'GT 50813955 Upstream 71bp
chr16 309980 309980 1 + C T SKCM 309995 + 309975 310015 41 CTCTCCCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG CTCTCTCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG < 41bp 1 0.585433238664908 1 0.0461578071117401 experiment 0.829133522670184 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:309995 chr16:309980 nonsynonymous SNV 0.014 2 6 hm5C_associated_SNPs_32973 0 0 1 4 1 FAM234A chr16:309968 3'AG 309968 Downstream 13bp
chr10 17278313 17278313 1 + C T SKCM 17278316 + 17278296 17278336 41 CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTCAAAA CTAATCTGGATTCACTCTCTCTGGTTGATACCCACTCAAAA < 41bp 1 0.374906283925765 1 0.712915420532227 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278316 chr10:17278313 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_32975 0 0 1 0 2 VIM chr10:17278293 3'AG 17278293 Downstream 21bp
chr10 17278313 17278313 1 + C T SKCM 17278316 + 17278296 17278336 41 CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTCAAAA CTAATCTGGATTCACTCTCTCTGGTTGATACCCACTCAAAA < 41bp 1 0.374906283925765 1 0.712915420532227 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278316 chr10:17278313 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_32975 0 0 1 0 2 VIM chr10:17278378 5'GT 17278378 Upstream 66bp
chr2 32800289 32800289 1 + C T SKCM 32800281 + 32800261 32800301 41 CTGCTGGAATTGCTTCGGGCCATTGCTTCTTGTGCTGCCAT CTGCTGGAATTGCTTCGGGCCATTGCTTTTTGTGCTGCCAT < 41bp 1 0.0360203149012819 1 0.11701101064682 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32800281 chr2:32800289 nonsynonymous SNV 0.990 2 29 hm5C_associated_SNPs_32976 0 0 1 0 1 BIRC6 chr2:32800223 3'AG 32800223 Downstream 67bp
chr6 34823398 34823398 1 + C T SKCM 34823411 + 34823391 34823431 41 TAGGTGTCTCTGCCAACAGACTCATGGGTGGTGCCATGCAG TAGGTGTTTCTGCCAACAGACTCATGGGTGGTGCCATGCAG < 41bp 1 0.20872750146139 1 0.239050000905991 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UHRF1BP1 ENSG00000065060 CDS Human protein_coding chr6:34823411 chr6:34823398 synonymous SNV . 0 8 hm5C_associated_SNPs_32979 0 0 1 0 1 UHRF1BP1 chr6:34823394 3'AG 34823394 Downstream 5bp
chr1 151262009 151262009 1 + A G SKCM 151262002 + 151261982 151262022 41 TTGCCCAAAAAAGGACCATGCTGGAACATCTCAAGGTACAG TTGCCCAAAAAAGGACCATGCTGGAACGTCTCAAGGTACAG < 41bp 1 0.716251220465474 1 0.428965002298355 experiment 0.567497559069052 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF687 ENSG00000143373 CDS Human protein_coding chr1:151262002 chr1:151262009 nonsynonymous SNV 0.999 3 28 hm5C_associated_SNPs_32981 0 0 0 0 1 ZNF687 chr1:151262016 5'GT 151262016 Upstream 8bp
chr1 27088718 27088718 1 + C T SKCM 27088714 + 27088694 27088734 41 GCTCAGCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA GCTCAGCCTTATCTCCGCGTCAGCTTTCCGGAGGACAGATA < 41bp 1 0.303353761279462 1 0.190733850002289 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27088714 chr1:27088718 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_32982 0 0 1 0 2 ARID1A chr1:27088643 3'AG 27088643 Downstream 76bp
chr1 27088718 27088718 1 + C T SKCM 27088714 + 27088694 27088734 41 GCTCAGCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA GCTCAGCCTTATCTCCGCGTCAGCTTTCCGGAGGACAGATA < 41bp 1 0.303353761279462 1 0.190733850002289 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27088714 chr1:27088718 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_32982 0 0 1 0 2 ARID1A chr1:27088810 5'GT 27088810 Upstream 93bp
chr18 60384439 60384439 1 + T G SKCM 60384441 + 60384421 60384461 41 TTGGGGAGCTGTGGAGGGTGCAGGAGGAAGGCATGGACTCG TTGGGGAGCTGTGGAGGGGGCAGGAGGAAGGCATGGACTCG < 41bp 1 0.766434138407091 1 0.869127988815308 experiment 0.467131723185818 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PHLPP1 ENSG00000081913 CDS Human protein_coding chr18:60384441 chr18:60384439 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_32988 0 0 1 0 1 PHLPP1 chr18:60384492 5'GT 60384492 Upstream 54bp
chr9 17786423 17786423 1 + C T SKCM 17786409 + 17786389 17786429 41 TAAGCTCAGCATGATCAACACCATGTCAAAAATCCGTGGCC TAAGCTCAGCATGATCAACACCATGTCAAAAATCTGTGGCC < 41bp 1 0.175389370534905 1 0.117599934339523 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SH3GL2 ENSG00000107295 CDS Human protein_coding chr9:17786409 chr9:17786423 nonsynonymous SNV 0.998 0 35 hm5C_associated_SNPs_32990 0 0 0 0 2 SH3GL2 chr9:17786379 3'AG 17786379 Downstream 45bp
chr9 17786423 17786423 1 + C T SKCM 17786409 + 17786389 17786429 41 TAAGCTCAGCATGATCAACACCATGTCAAAAATCCGTGGCC TAAGCTCAGCATGATCAACACCATGTCAAAAATCTGTGGCC < 41bp 1 0.175389370534905 1 0.117599934339523 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SH3GL2 ENSG00000107295 CDS Human protein_coding chr9:17786409 chr9:17786423 nonsynonymous SNV 0.998 0 35 hm5C_associated_SNPs_32990 0 0 0 0 2 SH3GL2 chr9:17786522 5'GT 17786522 Upstream 100bp
chr19 47884494 47884494 1 + C A SKCM 47884481 + 47884461 47884501 41 AGCGACTGTCTCCGAACCTTCTGGACCTGCCCCCACTGTGG AGCGACTGTCTCCGAACCTTCTGGACCTGCCCCAACTGTGG < 41bp 1 0.780319829477246 1 0.801715016365051 experiment 0.439360341045508 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DHX34 ENSG00000134815 CDS Human protein_coding chr19:47884481 chr19:47884494 nonsynonymous SNV 0.979 1 34 hm5C_associated_SNPs_32992 0 0 1 0 2 DHX34 chr19:47884443 3'AG 47884443 Downstream 52bp
chr19 47884494 47884494 1 + C A SKCM 47884481 + 47884461 47884501 41 AGCGACTGTCTCCGAACCTTCTGGACCTGCCCCCACTGTGG AGCGACTGTCTCCGAACCTTCTGGACCTGCCCCAACTGTGG < 41bp 1 0.780319829477246 1 0.801715016365051 experiment 0.439360341045508 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DHX34 ENSG00000134815 CDS Human protein_coding chr19:47884481 chr19:47884494 nonsynonymous SNV 0.979 1 34 hm5C_associated_SNPs_32992 0 0 1 0 2 DHX34 chr19:47884581 5'GT 47884581 Upstream 88bp
chr4 20555447 20555447 1 + C T SKCM 20555440 + 20555420 20555460 41 TTTTCCAGAGCAATTGGAGCCAACCCTCTTTACTGTGATTG TTTTCCAGAGCAATTGGAGCCAACCCTTTTTACTGTGATTG < 41bp 1 0.101895027188219 1 0.156450241804123 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20555440 chr4:20555447 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_32993 0 0 1 0 1 SLIT2 chr4:20555428 3'AG 20555428 Downstream 20bp
chr6 47576991 47576991 1 + C T SKCM 47576982 + 47576962 47577002 41 AAAAAAATTCCCTGGATGAACTTAGAGCCCAGATTATTGAA AAAAAAATTCCCTGGATGAACTTAGAGCCTAGATTATTGAA < 41bp 1 0.195338097860517 1 0.0927630662918091 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47576982 chr6:47576991 stopgain 1.000 0 30 hm5C_associated_SNPs_32994 0 0 1 0 1 CD2AP chr6:47577040 5'GT 47577040 Upstream 50bp
chr2 204143314 204143314 1 + C T SKCM 204143304 + 204143284 204143324 41 TTTTTCTCTAAGCCCTCATGCAACTGGAGTCTGTTTTAAGG TTTTTCTCTAAGCCCTCATGCAACTGGAGTTTGTTTTAAGG < 41bp 1 0.0961598394818742 1 0.693093657493591 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CYP20A1 ENSG00000119004 CDS Human protein_coding chr2:204143304 chr2:204143314 nonsynonymous SNV 0.995 1 31 hm5C_associated_SNPs_32995 0 0 1 0 2 CYP20A1 chr2:204143296 3'AG 204143296 Downstream 19bp
chr2 204143314 204143314 1 + C T SKCM 204143304 + 204143284 204143324 41 TTTTTCTCTAAGCCCTCATGCAACTGGAGTCTGTTTTAAGG TTTTTCTCTAAGCCCTCATGCAACTGGAGTTTGTTTTAAGG < 41bp 1 0.0961598394818742 1 0.693093657493591 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CYP20A1 ENSG00000119004 CDS Human protein_coding chr2:204143304 chr2:204143314 nonsynonymous SNV 0.995 1 31 hm5C_associated_SNPs_32995 0 0 1 0 2 CYP20A1 chr2:204143411 5'GT 204143411 Upstream 98bp
chr14 103390068 103390068 1 + A G SKCM 103390064 + 103390044 103390084 41 CCAGCACTGACCCAGGCGGTCTCCAAACTCTGGGTCCCCAA CCAGCACTGACCCAGGCGGTCTCCGAACTCTGGGTCCCCAA < 41bp 1 0.618678145069036 1 0.235884219408035 experiment 0.762643709861929 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control AMN ENSG00000166126 CDS Human protein_coding chr14:103390064 chr14:103390068 nonsynonymous SNV 0.937 4 25 hm5C_associated_SNPs_32996 0 0 1 0 2 AMN chr14:103390048 3'AG 103390048 Downstream 21bp
chr14 103390068 103390068 1 + A G SKCM 103390064 + 103390044 103390084 41 CCAGCACTGACCCAGGCGGTCTCCAAACTCTGGGTCCCCAA CCAGCACTGACCCAGGCGGTCTCCGAACTCTGGGTCCCCAA < 41bp 1 0.618678145069036 1 0.235884219408035 experiment 0.762643709861929 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control AMN ENSG00000166126 CDS Human protein_coding chr14:103390064 chr14:103390068 nonsynonymous SNV 0.937 4 25 hm5C_associated_SNPs_32996 0 0 1 0 2 AMN chr14:103390166 5'GT 103390166 Upstream 99bp
chr5 82868277 82868277 1 + T A SKCM 82868273 + 82868253 82868293 41 CCCAACCAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTG CCCAACCAGCCAGACAGCTTCTTTACTGCTGGAGAAGACTG < 41bp 1 0.105218924227343 1 0.116587817668915 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82868273 chr5:82868277 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_32997 0 0 1 0 1 VCAN chr5:82868235 3'AG 82868235 Downstream 43bp
chr5 82868277 82868277 1 + T A SKCM 82868278 + 82868258 82868298 41 CCAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTGTGTTG CCAGCCAGACAGCTTCTTTACTGCTGGAGAAGACTGTGTTG < 41bp 1 0.465445533714019 1 0.314036309719086 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82868278 chr5:82868277 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_32998 0 0 1 0 1 VCAN chr5:82868235 3'AG 82868235 Downstream 43bp
chr19 1055315 1055315 1 + C T SKCM 1055304 + 1055284 1055324 41 AGAACCTGACAGGCCGGAACCTGTCTGACTTCCTGGTCAAG AGAACCTGACAGGCCGGAACCTGTCTGACTTTCTGGTCAAG < 41bp 1 0.129381856089368 1 0.118060499429703 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1055304 chr19:1055315 synonymous SNV . 0 32 hm5C_associated_SNPs_32999 0 0 1 0 1 ABCA7 chr19:1055350 5'GT 1055350 Upstream 36bp
chr9 137702147 137702147 1 + G A SKCM 137702152 + 137702132 137702172 41 GCAAGGGGGACAAAGGAGAACAGGTAAGTATTGGCACGGGG GCAAGGGGGACAAAGAAGAACAGGTAAGTATTGGCACGGGG < 41bp 1 0.435875731107619 1 0.497283786535263 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137702152 chr9:137702147 nonsynonymous SNV 0.975 4 16 hm5C_associated_SNPs_33000 0 0 0 0 2 COL5A1 chr9:137702101 3'AG 137702101 Downstream 47bp
chr9 137702147 137702147 1 + G A SKCM 137702152 + 137702132 137702172 41 GCAAGGGGGACAAAGGAGAACAGGTAAGTATTGGCACGGGG GCAAGGGGGACAAAGAAGAACAGGTAAGTATTGGCACGGGG < 41bp 1 0.435875731107619 1 0.497283786535263 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137702152 chr9:137702147 nonsynonymous SNV 0.975 4 16 hm5C_associated_SNPs_33000 0 0 0 0 2 COL5A1 chr9:137702154 5'GT 137702154 Upstream 8bp
chr10 102114298 102114298 1 + C T SKCM 102114310 + 102114290 102114330 41 GTTGGCTGCTTGTGCGCAAACACCCAGCTGTCAAAGAGAAG GTTGGCTGTTTGTGCGCAAACACCCAGCTGTCAAAGAGAAG < 41bp 1 0.465619561837344 1 0.0448154807090759 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCD ENSG00000099194 CDS Human protein_coding chr10:102114310 chr10:102114298 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_33001 0 0 1 0 1 SCD chr10:102114389 5'GT 102114389 Upstream 92bp
chr10 118314900 118314900 1 + G A SKCM 118314913 + 118314893 118314933 41 ATTTCAGGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGA ATTTCAGAGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGA < 41bp 1 0.301642955232254 1 0.0895519554615021 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314913 chr10:118314900 nonsynonymous SNV 0.889 5 8 hm5C_associated_SNPs_33002 0 0 0 0 1 PNLIP chr10:118314900 5'GT 118314900 Upstream 1bp
chr10 118314900 118314900 1 + G A SKCM 118314914 + 118314894 118314934 41 TTTCAGGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGAT TTTCAGAGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGAT < 41bp 1 0.574968586964839 1 0.434966683387756 experiment 0.850062826070322 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314914 chr10:118314900 nonsynonymous SNV 0.889 5 7 hm5C_associated_SNPs_33003 0 0 0 0 1 PNLIP chr10:118314900 5'GT 118314900 Upstream 1bp
chr10 118314900 118314900 1 + G A SKCM 118314919 + 118314899 118314939 41 GGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTT GAGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTT < 41bp 1 0.594926412385063 1 0.395836234092712 experiment 0.810147175229874 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314919 chr10:118314900 nonsynonymous SNV 0.889 5 2 hm5C_associated_SNPs_33004 0 0 0 0 1 PNLIP chr10:118314900 5'GT 118314900 Upstream 1bp
chr3 123348364 123348364 1 + C T SKCM 123348379 + 123348359 123348399 41 GGCATCGTCGGAGATCTCATCGAATGCCTCGTCGTCGAAGT GGCATTGTCGGAGATCTCATCGAATGCCTCGTCGTCGAAGT < 41bp 1 0.563578977501968 1 0.361248314380646 experiment 0.872842044996063 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYLK ENSG00000065534 CDS Human protein_coding chr3:123348379 chr3:123348364 nonsynonymous SNV 0.991 1 6 hm5C_associated_SNPs_33005 0 0 1 0 1 MYLK chr3:123348341 3'AG 123348341 Downstream 24bp
chr10 17277175 17277175 1 + C T SKCM 17277176 + 17277156 17277196 41 CACCCCCTGCAGAATGAGTCCCTGGAACGCCAGATGCGTGA CACCCCCTGCAGAATGAGTTCCTGGAACGCCAGATGCGTGA < 41bp 1 0.175478583835548 1 0.220364958047867 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277176 chr10:17277175 nonsynonymous SNV 0.984 5 20 hm5C_associated_SNPs_33007 0 0 1 0 1 VIM chr10:17277168 3'AG 17277168 Downstream 8bp
chr10 17277175 17277175 1 + C T SKCM 17277185 + 17277165 17277205 41 CAGAATGAGTCCCTGGAACGCCAGATGCGTGAAATGGAAGA CAGAATGAGTTCCTGGAACGCCAGATGCGTGAAATGGAAGA < 41bp 1 0.42281443124748 1 0.506452322006226 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277185 chr10:17277175 nonsynonymous SNV 0.984 5 11 hm5C_associated_SNPs_33008 0 0 1 0 1 VIM chr10:17277168 3'AG 17277168 Downstream 8bp
chr10 17277175 17277175 1 + C T SKCM 17277192 + 17277172 17277212 41 AGTCCCTGGAACGCCAGATGCGTGAAATGGAAGAGAACTTT AGTTCCTGGAACGCCAGATGCGTGAAATGGAAGAGAACTTT < 41bp 1 0.623278376205259 1 0.34809610247612 experiment 0.753443247589481 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277192 chr10:17277175 nonsynonymous SNV 0.984 5 4 hm5C_associated_SNPs_33009 0 0 1 0 1 VIM chr10:17277168 3'AG 17277168 Downstream 8bp
chr19 12924222 12924222 1 + C T SKCM 12924210 + 12924190 12924230 41 CTACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTT CTACTTCCTCAATGAAGGGTCCCAAGCCCGTCTCCGTTCTT < 41bp 1 0.338337996210214 1 0.0867345333099365 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924210 chr19:12924222 nonsynonymous SNV 0.000 1 33 hm5C_associated_SNPs_33013 0 0 1 0 1 RNASEH2A chr19:12924142 3'AG 12924142 Downstream 81bp
chr19 12924222 12924222 1 + C T SKCM 12924211 + 12924191 12924231 41 TACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTTC TACTTCCTCAATGAAGGGTCCCAAGCCCGTCTCCGTTCTTC < 41bp 1 0.118331636456806 1 0.0571168065071106 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924211 chr19:12924222 nonsynonymous SNV 0.000 1 32 hm5C_associated_SNPs_33014 0 0 1 0 1 RNASEH2A chr19:12924142 3'AG 12924142 Downstream 81bp
chr19 12924222 12924222 1 + C T SKCM 12924232 + 12924212 12924252 41 CAAGCCCGTCCCCGTTCTTCCCACCGATATTTCCTGGAACG CAAGCCCGTCTCCGTTCTTCCCACCGATATTTCCTGGAACG < 41bp 1 0.156925525786646 1 0.0685359835624695 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924232 chr19:12924222 nonsynonymous SNV 0.000 1 11 hm5C_associated_SNPs_33015 0 0 1 0 1 RNASEH2A chr19:12924142 3'AG 12924142 Downstream 81bp
chr5 176522676 176522676 1 + C T SKCM 176522657 + 176522637 176522677 41 GAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGGTCTCCT GAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGGTCTCTT < 41bp 1 0.0526767796823401 1 0.219229847192764 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522657 chr5:176522676 synonymous SNV . 0 40 hm5C_associated_SNPs_33016 0 0 1 0 1 FGFR4 chr5:176522724 5'GT 176522724 Upstream 49bp
chr11 46747427 46747427 1 + T A SKCM 46747436 + 46747416 46747456 41 TCAAGTCACTGTAGCGATGACTCCACGCTCCGAAGGCTCCA TCAAGTCACTGAAGCGATGACTCCACGCTCCGAAGGCTCCA < 41bp 1 0.710485577028845 1 0.964865207672119 experiment 0.579028845942311 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control F2 ENSG00000180210 CDS Human protein_coding chr11:46747436 chr11:46747427 nonsynonymous SNV 0.045 0 12 hm5C_associated_SNPs_33018 0 0 0 0 1 F2 chr11:46747409 3'AG 46747409 Downstream 19bp
chr19 12924223 12924223 1 + C T SKCM 12924210 + 12924190 12924230 41 CTACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTT CTACTTCCTCAATGAAGGGTCCCAAGCCCGTCCTCGTTCTT < 41bp 1 0.315524612606752 1 0.0429238080978394 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924210 chr19:12924223 synonymous SNV . 0 34 hm5C_associated_SNPs_33019 0 0 1 0 1 RNASEH2A chr19:12924142 3'AG 12924142 Downstream 82bp
chr19 12924223 12924223 1 + C T SKCM 12924211 + 12924191 12924231 41 TACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTTC TACTTCCTCAATGAAGGGTCCCAAGCCCGTCCTCGTTCTTC < 41bp 1 0.105139591269371 1 0.0451509356498718 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924211 chr19:12924223 synonymous SNV . 0 33 hm5C_associated_SNPs_33020 0 0 1 0 1 RNASEH2A chr19:12924142 3'AG 12924142 Downstream 82bp
chr19 12924223 12924223 1 + C T SKCM 12924232 + 12924212 12924252 41 CAAGCCCGTCCCCGTTCTTCCCACCGATATTTCCTGGAACG CAAGCCCGTCCTCGTTCTTCCCACCGATATTTCCTGGAACG < 41bp 1 0.136967049713126 1 0.0628723502159119 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924232 chr19:12924223 synonymous SNV . 0 12 hm5C_associated_SNPs_33021 0 0 1 0 1 RNASEH2A chr19:12924142 3'AG 12924142 Downstream 82bp
chr17 7476166 7476166 1 + G A SKCM 7476180 + 7476160 7476200 41 ATGTCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCA ATGTCTACGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCA < 41bp 1 0.37393210978976 1 0.0886116027832031 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7476180 chr17:7476166 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_33022 0 0 1 0 1 EIF4A1 chr17:7476182 5'GT 7476182 Upstream 17bp
chr17 7476166 7476166 1 + G A SKCM 7476181 + 7476161 7476201 41 TGTCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCAA TGTCTACGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCAA < 41bp 1 0.698417972731271 1 0.632169604301453 experiment 0.603164054537458 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7476181 chr17:7476166 nonsynonymous SNV 1.000 0 6 hm5C_associated_SNPs_33023 0 0 1 0 1 EIF4A1 chr17:7476182 5'GT 7476182 Upstream 17bp
chr5 179150759 179150759 1 + C T SKCM 179150760 + 179150740 179150780 41 TTCCTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAAG TTCCTGTGTTCCTGGTTATTCTCTTCTGCTGTTCTGGAAAG < 41bp 1 0.331168264305379 1 0.248176991939545 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179150760 chr5:179150759 synonymous SNV . 0 20 hm5C_associated_SNPs_33025 0 0 1 0 2 CANX chr5:179150661 3'AG 179150661 Downstream 99bp
chr5 179150759 179150759 1 + C T SKCM 179150760 + 179150740 179150780 41 TTCCTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAAG TTCCTGTGTTCCTGGTTATTCTCTTCTGCTGTTCTGGAAAG < 41bp 1 0.331168264305379 1 0.248176991939545 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179150760 chr5:179150759 synonymous SNV . 0 20 hm5C_associated_SNPs_33025 0 0 1 0 2 CANX chr5:179150780 5'GT 179150780 Upstream 22bp
chr17 64783058 64783058 1 + C T SKCM 64783073 + 64783053 64783093 41 AAAATCCTTGTCCAAGGAGGCTGTTTCTGTCTGCAAAGGAG AAAATTCTTGTCCAAGGAGGCTGTTTCTGTCTGCAAAGGAG < 41bp 1 0.0443267099011385 1 0.225540578365326 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64783073 chr17:64783058 nonsynonymous SNV 0.953 1 6 hm5C_associated_SNPs_33030 0 0 1 0 2 PRKCA chr17:64782985 3'AG 64782985 Downstream 74bp
chr17 64783058 64783058 1 + C T SKCM 64783073 + 64783053 64783093 41 AAAATCCTTGTCCAAGGAGGCTGTTTCTGTCTGCAAAGGAG AAAATTCTTGTCCAAGGAGGCTGTTTCTGTCTGCAAAGGAG < 41bp 1 0.0443267099011385 1 0.225540578365326 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64783073 chr17:64783058 nonsynonymous SNV 0.953 1 6 hm5C_associated_SNPs_33030 0 0 1 0 2 PRKCA chr17:64783092 5'GT 64783092 Upstream 35bp
chr1 155279906 155279906 1 + C T SKCM 155279915 + 155279895 155279935 41 AAGCAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGGT AAGCAGGATTTTGTTCAGCACTTCTCCCAGATCGTTAGGGT < 41bp 1 0.121607527431422 1 0.086618036031723 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155279915 chr1:155279906 synonymous SNV . 0 12 hm5C_associated_SNPs_33035 0 0 1 0 3 FDPS chr1:155279834 3'AG 155279834 Downstream 73bp
chr1 155279906 155279906 1 + C T SKCM 155279915 + 155279895 155279935 41 AAGCAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGGT AAGCAGGATTTTGTTCAGCACTTCTCCCAGATCGTTAGGGT < 41bp 1 0.121607527431422 1 0.086618036031723 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155279915 chr1:155279906 synonymous SNV . 0 12 hm5C_associated_SNPs_33035 0 0 1 0 3 FDPS chr1:155279855 3'AG 155279855 Downstream 52bp
chr1 155279906 155279906 1 + C T SKCM 155279915 + 155279895 155279935 41 AAGCAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGGT AAGCAGGATTTTGTTCAGCACTTCTCCCAGATCGTTAGGGT < 41bp 1 0.121607527431422 1 0.086618036031723 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155279915 chr1:155279906 synonymous SNV . 0 12 hm5C_associated_SNPs_33035 0 0 1 0 3 FDPS chr1:155279996 5'GT 155279996 Upstream 91bp
chr6 31912779 31912779 1 + C T SKCM 31912772 + 31912752 31912792 41 GGCAGGAGAATCTGGGGGAGCAGTTTTCCTTGAGCGGAGAT GGCAGGAGAATCTGGGGGAGCAGTTTTTCTTGAGCGGAGAT < 41bp 1 0.158300041911037 1 0.357093632221222 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C2 ENSG00000166278 CDS Human protein_coding chr6:31912772 chr6:31912779 synonymous SNV . 0 28 hm5C_associated_SNPs_33036 0 0 1 0 2 C2 chr6:31912757 3'AG 31912757 Downstream 23bp
chr6 31912779 31912779 1 + C T SKCM 31912772 + 31912752 31912792 41 GGCAGGAGAATCTGGGGGAGCAGTTTTCCTTGAGCGGAGAT GGCAGGAGAATCTGGGGGAGCAGTTTTTCTTGAGCGGAGAT < 41bp 1 0.158300041911037 1 0.357093632221222 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C2 ENSG00000166278 CDS Human protein_coding chr6:31912772 chr6:31912779 synonymous SNV . 0 28 hm5C_associated_SNPs_33036 0 0 1 0 2 C2 chr6:31912806 5'GT 31912806 Upstream 28bp
chrX 153628232 153628232 1 + C T SKCM 153628229 + 153628209 153628249 41 CATATCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCAT CATATCCGGGTGCGGCTCCACCCTTTCCACGTCATCCGCAT < 41bp 1 0.175331861611953 1 0.0176310539245605 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628229 chrX:153628232 synonymous SNV . 0 24 hm5C_associated_SNPs_33038 0 0 1 0 1 RPL10 chrX:153628282 5'GT 153628282 Upstream 51bp
chr11 57373926 57373926 1 + C T SKCM 57373925 + 57373905 57373945 41 CCAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA CCAAGAAAACCAGAATGGAACTCTTTCACTTCAAAAACTCA < 41bp 1 0.0590576479221573 1 0.0841116011142731 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373925 chr11:57373926 nonsynonymous SNV 0.005 1 22 hm5C_associated_SNPs_33041 0 0 0 0 2 SERPING1 chr11:57373881 3'AG 57373881 Downstream 46bp
chr11 57373926 57373926 1 + C T SKCM 57373925 + 57373905 57373945 41 CCAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA CCAAGAAAACCAGAATGGAACTCTTTCACTTCAAAAACTCA < 41bp 1 0.0590576479221573 1 0.0841116011142731 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373925 chr11:57373926 nonsynonymous SNV 0.005 1 22 hm5C_associated_SNPs_33041 0 0 0 0 2 SERPING1 chr11:57374020 5'GT 57374020 Upstream 95bp
chr11 57373926 57373926 1 + C T SKCM 57373927 + 57373907 57373947 41 AAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAGT AAGAAAACCAGAATGGAACTCTTTCACTTCAAAAACTCAGT < 41bp 1 0.0202458816843359 1 0.0550184547901154 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373927 chr11:57373926 nonsynonymous SNV 0.005 1 20 hm5C_associated_SNPs_33042 0 0 0 0 2 SERPING1 chr11:57373881 3'AG 57373881 Downstream 46bp
chr11 57373926 57373926 1 + C T SKCM 57373927 + 57373907 57373947 41 AAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAGT AAGAAAACCAGAATGGAACTCTTTCACTTCAAAAACTCAGT < 41bp 1 0.0202458816843359 1 0.0550184547901154 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373927 chr11:57373926 nonsynonymous SNV 0.005 1 20 hm5C_associated_SNPs_33042 0 0 0 0 2 SERPING1 chr11:57374020 5'GT 57374020 Upstream 95bp
chr11 57373926 57373926 1 + C T SKCM 57373933 + 57373913 57373953 41 ACCAGAATGGAACCCTTTCACTTCAAAAACTCAGTTATAAA ACCAGAATGGAACTCTTTCACTTCAAAAACTCAGTTATAAA < 41bp 1 0.47332484688398 1 0.171887993812561 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373933 chr11:57373926 nonsynonymous SNV 0.005 1 14 hm5C_associated_SNPs_33043 0 0 0 0 2 SERPING1 chr11:57373881 3'AG 57373881 Downstream 46bp
chr11 57373926 57373926 1 + C T SKCM 57373933 + 57373913 57373953 41 ACCAGAATGGAACCCTTTCACTTCAAAAACTCAGTTATAAA ACCAGAATGGAACTCTTTCACTTCAAAAACTCAGTTATAAA < 41bp 1 0.47332484688398 1 0.171887993812561 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373933 chr11:57373926 nonsynonymous SNV 0.005 1 14 hm5C_associated_SNPs_33043 0 0 0 0 2 SERPING1 chr11:57374020 5'GT 57374020 Upstream 95bp
chr17 29554567 29554567 1 + G A SKCM 29554583 + 29554563 29554603 41 AATGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA AATGAGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA < 41bp 1 0.115624238386339 1 0.0956215560436249 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29554583 chr17:29554567 stopgain 1.000 1 5 hm5C_associated_SNPs_33044 1 0 1 0 2 NF1 chr17:29554541 3'AG 29554541 Downstream 27bp
chr17 29554567 29554567 1 + G A SKCM 29554583 + 29554563 29554603 41 AATGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA AATGAGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA < 41bp 1 0.115624238386339 1 0.0956215560436249 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29554583 chr17:29554567 stopgain 1.000 1 5 hm5C_associated_SNPs_33044 1 0 1 0 2 NF1 chr17:29554624 5'GT 29554624 Upstream 58bp
chr17 66033503 66033503 1 + T C SKCM 66033483 + 66033463 66033503 41 CTTTTCTCAAGGAAATGAGGCGTCGCAGAATAGAGGTCAAT CTTTTCTCAAGGAAATGAGGCGTCGCAGAATAGAGGTCAAC < 41bp 1 0.168980034827355 1 0.118505507707596 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033483 chr17:66033503 nonsynonymous SNV . 0 41 hm5C_associated_SNPs_33045 0 0 1 0 1 KPNA2 chr17:66033474 3'AG 66033474 Downstream 30bp
chr17 66033503 66033503 1 + T C SKCM 66033486 + 66033466 66033506 41 TTCTCAAGGAAATGAGGCGTCGCAGAATAGAGGTCAATGTG TTCTCAAGGAAATGAGGCGTCGCAGAATAGAGGTCAACGTG < 41bp 1 0.714275338920691 1 0.23277822136879 experiment 0.571449322158619 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033486 chr17:66033503 nonsynonymous SNV . 0 38 hm5C_associated_SNPs_33046 0 0 1 0 1 KPNA2 chr17:66033474 3'AG 66033474 Downstream 30bp
chr17 66033503 66033503 1 + T C SKCM 66033488 + 66033468 66033508 41 CTCAAGGAAATGAGGCGTCGCAGAATAGAGGTCAATGTGGA CTCAAGGAAATGAGGCGTCGCAGAATAGAGGTCAACGTGGA < 41bp 1 0.780830010027433 1 0.695401072502136 experiment 0.438339979945133 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033488 chr17:66033503 nonsynonymous SNV . 0 36 hm5C_associated_SNPs_33047 0 0 1 0 1 KPNA2 chr17:66033474 3'AG 66033474 Downstream 30bp
chr17 66033503 66033503 1 + T C SKCM 66033510 + 66033490 66033530 41 GAATAGAGGTCAATGTGGAGCTGAGGAAAGCTAAGAAGGAT GAATAGAGGTCAACGTGGAGCTGAGGAAAGCTAAGAAGGAT < 41bp 1 0.626551969108269 1 0.419543147087097 experiment 0.746896061783461 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033510 chr17:66033503 nonsynonymous SNV . 0 14 hm5C_associated_SNPs_33048 0 0 1 0 1 KPNA2 chr17:66033474 3'AG 66033474 Downstream 30bp
chr17 66033503 66033503 1 + T C SKCM 66033520 + 66033500 66033540 41 CAATGTGGAGCTGAGGAAAGCTAAGAAGGATGACCAGATGC CAACGTGGAGCTGAGGAAAGCTAAGAAGGATGACCAGATGC < 41bp 1 0.592798155960296 1 0.205645114183426 experiment 0.814403688079408 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033520 chr17:66033503 nonsynonymous SNV . 0 4 hm5C_associated_SNPs_33049 0 0 1 0 1 KPNA2 chr17:66033474 3'AG 66033474 Downstream 30bp
chr13 113487183 113487183 1 + G A SKCM 113487177 + 113487157 113487197 41 GAACTGCTTTTTTATAGGAGCGCGAGGAGCTGTTTTTCCGG GAACTGCTTTTTTATAGGAGCGCGAGAAGCTGTTTTTCCGG < 41bp 1 0.667879167668804 1 0.619832813739777 experiment 0.664241664662392 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP11A ENSG00000068650 CDS Human protein_coding chr13:113487177 chr13:113487183 nonsynonymous SNV 0.955 1 27 hm5C_associated_SNPs_33050 0 0 1 0 1 ATP11A chr13:113487174 3'AG 113487174 Downstream 10bp
chr7 142457350 142457350 1 + G A SKCM 142457345 + 142457325 142457365 41 ACTCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTG ACTCTACCACCATGAATCCACTCCTAATCCTTACCTTTGTG < 41bp 1 0.19618092078612 1 0.0556423664093018 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457345 chr7:142457350 synonymous SNV . 0 26 hm5C_associated_SNPs_33052 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 26bp
chr7 142457350 142457350 1 + G A SKCM 142457347 + 142457327 142457367 41 TCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGC TCTACCACCATGAATCCACTCCTAATCCTTACCTTTGTGGC < 41bp 1 0.110841316040329 1 0.167268604040146 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457347 chr7:142457350 synonymous SNV . 0 24 hm5C_associated_SNPs_33053 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 26bp
chr7 142457350 142457350 1 + G A SKCM 142457348 + 142457328 142457368 41 CTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGCA CTACCACCATGAATCCACTCCTAATCCTTACCTTTGTGGCA < 41bp 1 0.0643956862325446 1 0.189029514789581 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457348 chr7:142457350 synonymous SNV . 0 23 hm5C_associated_SNPs_33054 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 26bp
chr7 142457350 142457350 1 + G A SKCM 142457353 + 142457333 142457373 41 ACCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGC ACCATGAATCCACTCCTAATCCTTACCTTTGTGGCAGCTGC < 41bp 1 0.0941516949837495 1 0.0571050643920898 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457353 chr7:142457350 synonymous SNV . 0 18 hm5C_associated_SNPs_33055 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 26bp
chr7 142457350 142457350 1 + G A SKCM 142457354 + 142457334 142457374 41 CCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCT CCATGAATCCACTCCTAATCCTTACCTTTGTGGCAGCTGCT < 41bp 1 0.0574142173516575 1 0.097992330789566 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457354 chr7:142457350 synonymous SNV . 0 17 hm5C_associated_SNPs_33056 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 26bp
chr7 142457350 142457350 1 + G A SKCM 142457358 + 142457338 142457378 41 GAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTG GAATCCACTCCTAATCCTTACCTTTGTGGCAGCTGCTCGTG < 41bp 1 0.0298751667126139 1 0.0207196474075317 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457358 chr7:142457350 synonymous SNV . 0 13 hm5C_associated_SNPs_33057 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 26bp
chr7 142457350 142457350 1 + G A SKCM 142457359 + 142457339 142457379 41 AATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTGA AATCCACTCCTAATCCTTACCTTTGTGGCAGCTGCTCGTGA < 41bp 1 0.14239210802812 1 0.138241440057755 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457359 chr7:142457350 synonymous SNV . 0 12 hm5C_associated_SNPs_33058 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 26bp
chr7 142457350 142457350 1 + G A SKCM 142457367 + 142457347 142457387 41 CCTGATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATG CCTAATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATG < 41bp 1 0.300388450394124 1 0.240536868572235 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457367 chr7:142457350 synonymous SNV . 0 4 hm5C_associated_SNPs_33059 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 26bp
chr7 142457350 142457350 1 + G A SKCM 142457370 + 142457350 142457390 41 GATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCC AATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCC < 41bp 1 0.282015218583083 1 0.185142815113068 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457370 chr7:142457350 synonymous SNV . 0 1 hm5C_associated_SNPs_33060 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 26bp
chr17 29554566 29554566 1 + G A SKCM 29554583 + 29554563 29554603 41 AATGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA AATAGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA < 41bp 1 0.113773485298973 1 0.0882815718650818 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29554583 chr17:29554566 stopgain 1.000 1 4 hm5C_associated_SNPs_33062 0 0 1 0 2 NF1 chr17:29554541 3'AG 29554541 Downstream 26bp
chr17 29554566 29554566 1 + G A SKCM 29554583 + 29554563 29554603 41 AATGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA AATAGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA < 41bp 1 0.113773485298973 1 0.0882815718650818 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29554583 chr17:29554566 stopgain 1.000 1 4 hm5C_associated_SNPs_33062 0 0 1 0 2 NF1 chr17:29554624 5'GT 29554624 Upstream 59bp
chrX 105891583 105891583 1 + G A SKCM 105891593 + 105891573 105891613 41 ACAAACAAAGGGAATTAAACCGGGCATGCCAAGCATCTTCA ACAAACAAAGAGAATTAAACCGGGCATGCCAAGCATCTTCA < 41bp 1 0.682366630943268 1 0.59158581495285 experiment 0.635266738113463 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105891593 chrX:105891583 nonsynonymous SNV 0.171 0 11 hm5C_associated_SNPs_33064 0 0 0 0 1 CXorf57 chrX:105891616 5'GT 105891616 Upstream 34bp
chrX 105891584 105891584 1 + G A SKCM 105891593 + 105891573 105891613 41 ACAAACAAAGGGAATTAAACCGGGCATGCCAAGCATCTTCA ACAAACAAAGGAAATTAAACCGGGCATGCCAAGCATCTTCA < 41bp 1 0.645487383157998 1 0.633966147899628 experiment 0.709025233684004 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105891593 chrX:105891584 nonsynonymous SNV 0.163 0 12 hm5C_associated_SNPs_33065 0 0 0 0 1 CXorf57 chrX:105891616 5'GT 105891616 Upstream 33bp
chr1 11718602 11718602 1 + G A SKCM 11718593 + 11718573 11718613 41 CCTCTGCCTGCCCCCAGCACCTGCCTCAAGTCCCAGGTGGT CCTCTGCCTGCCCCCAGCACCTGCCTCAAATCCCAGGTGGT < 41bp 1 0.245527510348091 1 0.111568033695221 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718593 chr1:11718602 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_33066 0 0 1 2 2 FBXO44 chr1:11718590 3'AG 11718590 Downstream 13bp
chr1 11718602 11718602 1 + G A SKCM 11718593 + 11718573 11718613 41 CCTCTGCCTGCCCCCAGCACCTGCCTCAAGTCCCAGGTGGT CCTCTGCCTGCCCCCAGCACCTGCCTCAAATCCCAGGTGGT < 41bp 1 0.245527510348091 1 0.111568033695221 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718593 chr1:11718602 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_33066 0 0 1 2 2 FBXO44 chr1:11718685 5'GT 11718685 Upstream 84bp
chr11 400004 400004 1 + G A SKCM 399996 + 399976 400016 41 GGAACCTTTCATCCAGCGACCACCTGAAGGACCGCCTGGCC GGAACCTTTCATCCAGCGACCACCTGAAAGACCGCCTGGCC < 41bp 1 0.310378449195483 1 0.377758115530014 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PKP3 ENSG00000184363 CDS Human protein_coding chr11:399996 chr11:400004 synonymous SNV . 0 29 hm5C_associated_SNPs_33070 0 0 1 0 1 PKP3 chr11:399967 3'AG 399967 Downstream 38bp
chr11 400005 400005 1 + G A SKCM 399996 + 399976 400016 41 GGAACCTTTCATCCAGCGACCACCTGAAGGACCGCCTGGCC GGAACCTTTCATCCAGCGACCACCTGAAGAACCGCCTGGCC < 41bp 1 0.316413152899457 1 0.293822586536407 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PKP3 ENSG00000184363 CDS Human protein_coding chr11:399996 chr11:400005 nonsynonymous SNV 0.995 0 30 hm5C_associated_SNPs_33071 0 0 1 0 1 PKP3 chr11:399967 3'AG 399967 Downstream 39bp
chr11 32953892 32953892 1 + C T SKCM 32953900 + 32953880 32953920 41 AGTCATCTTTATCCTGTAGCCCAATTGGAGATTCCACTCAG AGTCATCTTTATTCTGTAGCCCAATTGGAGATTCCACTCAG < 41bp 1 0.240664200706758 1 0.161152631044388 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QSER1 ENSG00000060749 CDS Human protein_coding chr11:32953900 chr11:32953892 nonsynonymous SNV 0.996 3 13 hm5C_associated_SNPs_33073 0 0 1 0 1 QSER1 chr11:32953920 5'GT 32953920 Upstream 29bp
chr11 32953892 32953892 1 + C T SKCM 32953901 + 32953881 32953921 41 GTCATCTTTATCCTGTAGCCCAATTGGAGATTCCACTCAGG GTCATCTTTATTCTGTAGCCCAATTGGAGATTCCACTCAGG < 41bp 1 0.0836376260682505 1 0.134955257177353 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QSER1 ENSG00000060749 CDS Human protein_coding chr11:32953901 chr11:32953892 nonsynonymous SNV 0.996 3 12 hm5C_associated_SNPs_33074 0 0 1 0 1 QSER1 chr11:32953920 5'GT 32953920 Upstream 29bp
chr19 806426 806426 1 + T G SKCM 806441 + 806421 806461 41 GAACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGG GAACGGCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGG < 41bp 1 0.300477303669071 1 0.0288357734680176 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806441 chr19:806426 nonsynonymous SNV 0.006 0 6 hm5C_associated_SNPs_33075 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 19bp
chr19 806426 806426 1 + T G SKCM 806442 + 806422 806462 41 AACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGC AACGGCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGC < 41bp 1 0.402237503311127 1 0.0781495273113251 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806442 chr19:806426 nonsynonymous SNV 0.006 0 5 hm5C_associated_SNPs_33076 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 19bp
chr19 806426 806426 1 + T G SKCM 806443 + 806423 806463 41 ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCG ACGGCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCG < 41bp 1 0.426020327945649 1 0.0342611074447632 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806443 chr19:806426 nonsynonymous SNV 0.006 0 4 hm5C_associated_SNPs_33077 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 19bp
chr19 806426 806426 1 + T G SKCM 806444 + 806424 806464 41 CGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG CGGCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG < 41bp 1 0.466387883835186 1 0.174447983503342 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806444 chr19:806426 nonsynonymous SNV 0.006 0 3 hm5C_associated_SNPs_33078 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 19bp
chr19 806426 806426 1 + T G SKCM 806445 + 806425 806465 41 GTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGC GGCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGC < 41bp 1 0.502625418168959 1 0.540522158145905 experiment 0.994749163662082 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806445 chr19:806426 nonsynonymous SNV 0.006 0 2 hm5C_associated_SNPs_33079 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 19bp
chr19 806426 806426 1 + T G SKCM 806446 + 806426 806466 41 TCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCG GCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCG < 41bp 1 0.782233487012028 1 0.449589610099792 experiment 0.435533025975945 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806446 chr19:806426 nonsynonymous SNV 0.006 0 1 hm5C_associated_SNPs_33080 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 19bp
chr8 21844783 21844783 1 + C T SKCM 21844767 + 21844747 21844787 41 GTAAGATCTACATTGGGGACCAAGTGCAGAAATCCTCTAAG GTAAGATCTACATTGGGGACCAAGTGCAGAAATCCTTTAAG < 41bp 1 0.306077026781466 1 0.524424076080322 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21844767 chr8:21844783 nonsynonymous SNV 0.983 4 37 hm5C_associated_SNPs_33081 0 0 1 0 1 XPO7 chr8:21844787 5'GT 21844787 Upstream 5bp
chr14 103802236 103802236 1 + C T SKCM 103802231 + 103802211 103802251 41 TCAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATG TCAACCGCAGCGTGTCAGACCAGTTTTATCGCTACAAGATG < 41bp 1 0.239708010213624 1 0.0532376170158386 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103802231 chr14:103802236 synonymous SNV . 0 26 hm5C_associated_SNPs_33083 0 0 1 0 1 EIF5 chr14:103802269 5'GT 103802269 Upstream 34bp
chr10 114711274 114711274 1 + G A SKCM 114711291 + 114711271 114711311 41 AAGGGGCCACCGTATCCCGGCTACCCCTTCATCATGATCCC AAGAGGCCACCGTATCCCGGCTACCCCTTCATCATGATCCC < 41bp 1 0.361894002450433 1 0.043953537940979 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114711291 chr10:114711274 nonsynonymous SNV 0.979 4 4 hm5C_associated_SNPs_33086 0 0 1 0 2 TCF7L2 chr10:114711242 3'AG 114711242 Downstream 33bp
chr10 114711274 114711274 1 + G A SKCM 114711291 + 114711271 114711311 41 AAGGGGCCACCGTATCCCGGCTACCCCTTCATCATGATCCC AAGAGGCCACCGTATCCCGGCTACCCCTTCATCATGATCCC < 41bp 1 0.361894002450433 1 0.043953537940979 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114711291 chr10:114711274 nonsynonymous SNV 0.979 4 4 hm5C_associated_SNPs_33086 0 0 1 0 2 TCF7L2 chr10:114711366 5'GT 114711366 Upstream 93bp
chr19 41135393 41135393 1 + C T SKCM 41135396 + 41135376 41135416 41 CCTTCCGCTGCATCTGCCGCCCGGGATTCGCACCCACGCAC CCTTCCGCTGCATCTGCTGCCCGGGATTCGCACCCACGCAC < 41bp 1 0.651803156739852 1 0.874475002288818 experiment 0.696393686520296 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41135396 chr19:41135393 nonsynonymous SNV 0.040 1 18 hm5C_associated_SNPs_33087 0 0 1 0 1 LTBP4 chr19:41135301 3'AG 41135301 Downstream 93bp
chr6 36566687 36566687 1 + C T SKCM 36566703 + 36566683 36566723 41 AAATCGTGGCCCACCTCCCTCTTGGGGTCGTCGCCCTCGAG AAATTGTGGCCCACCTCCCTCTTGGGGTCGTCGCCCTCGAG < 41bp 1 0.744806503004224 1 0.25057515501976 experiment 0.510386993991551 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36566703 chr6:36566687 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_33088 0 0 1 0 2 SRSF3 chr6:36566626 3'AG 36566626 Downstream 62bp
chr6 36566687 36566687 1 + C T SKCM 36566703 + 36566683 36566723 41 AAATCGTGGCCCACCTCCCTCTTGGGGTCGTCGCCCTCGAG AAATTGTGGCCCACCTCCCTCTTGGGGTCGTCGCCCTCGAG < 41bp 1 0.744806503004224 1 0.25057515501976 experiment 0.510386993991551 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36566703 chr6:36566687 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_33088 0 0 1 0 2 SRSF3 chr6:36566760 5'GT 36566760 Upstream 74bp
chr10 114711273 114711273 1 + G A SKCM 114711291 + 114711271 114711311 41 AAGGGGCCACCGTATCCCGGCTACCCCTTCATCATGATCCC AAAGGGCCACCGTATCCCGGCTACCCCTTCATCATGATCCC < 41bp 1 0.371779191283174 1 0.0392322540283203 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114711291 chr10:114711273 synonymous SNV . 0 3 hm5C_associated_SNPs_33089 0 0 1 0 2 TCF7L2 chr10:114711242 3'AG 114711242 Downstream 32bp
chr10 114711273 114711273 1 + G A SKCM 114711291 + 114711271 114711311 41 AAGGGGCCACCGTATCCCGGCTACCCCTTCATCATGATCCC AAAGGGCCACCGTATCCCGGCTACCCCTTCATCATGATCCC < 41bp 1 0.371779191283174 1 0.0392322540283203 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114711291 chr10:114711273 synonymous SNV . 0 3 hm5C_associated_SNPs_33089 0 0 1 0 2 TCF7L2 chr10:114711366 5'GT 114711366 Upstream 94bp
chr19 41135392 41135392 1 + C T SKCM 41135396 + 41135376 41135416 41 CCTTCCGCTGCATCTGCCGCCCGGGATTCGCACCCACGCAC CCTTCCGCTGCATCTGTCGCCCGGGATTCGCACCCACGCAC < 41bp 1 0.635446226063241 1 0.887798607349396 experiment 0.729107547873519 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41135396 chr19:41135392 synonymous SNV . 0 17 hm5C_associated_SNPs_33090 0 0 1 0 1 LTBP4 chr19:41135301 3'AG 41135301 Downstream 92bp
chr5 150406548 150406548 1 + G A SKCM 150406545 + 150406525 150406565 41 CCAATTTGGAAAACAGGAACCAGGAGAGAACTCAGAGATCC CCAATTTGGAAAACAGGAACCAGAAGAGAACTCAGAGATCC < 41bp 1 0.752721622159318 1 0.773754835128784 experiment 0.494556755681364 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control GPX3 ENSG00000211445 CDS Human protein_coding chr5:150406545 chr5:150406548 unknown 0.999 3 24 hm5C_associated_SNPs_33091 0 0 1 0 2 GPX3 chr5:150406461 3'AG 150406461 Downstream 88bp
chr5 150406548 150406548 1 + G A SKCM 150406545 + 150406525 150406565 41 CCAATTTGGAAAACAGGAACCAGGAGAGAACTCAGAGATCC CCAATTTGGAAAACAGGAACCAGAAGAGAACTCAGAGATCC < 41bp 1 0.752721622159318 1 0.773754835128784 experiment 0.494556755681364 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control GPX3 ENSG00000211445 CDS Human protein_coding chr5:150406545 chr5:150406548 unknown 0.999 3 24 hm5C_associated_SNPs_33091 0 0 1 0 2 GPX3 chr5:150406578 5'GT 150406578 Upstream 31bp
chr16 70165249 70165249 1 + C T SKCM 70165261 + 70165241 70165281 41 GTTAGTATCCCGCTACATGCCTGCGAACACTTCTACCTCCT GTTAGTATTCCGCTACATGCCTGCGAACACTTCTACCTCCT < 41bp 1 0.742266454829301 1 0.0774629712104797 experiment 0.515467090341398 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70165261 chr16:70165249 synonymous SNV . 0 9 hm5C_associated_SNPs_33092 0 0 0 0 2 PDPR chr16:70165205 3'AG 70165205 Downstream 45bp
chr16 70165249 70165249 1 + C T SKCM 70165261 + 70165241 70165281 41 GTTAGTATCCCGCTACATGCCTGCGAACACTTCTACCTCCT GTTAGTATTCCGCTACATGCCTGCGAACACTTCTACCTCCT < 41bp 1 0.742266454829301 1 0.0774629712104797 experiment 0.515467090341398 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70165261 chr16:70165249 synonymous SNV . 0 9 hm5C_associated_SNPs_33092 0 0 0 0 2 PDPR chr16:70165322 5'GT 70165322 Upstream 74bp
chr16 78143687 78143687 1 + G A SKCM 78143695 + 78143675 78143715 41 ATTTGCCATACGGATGGGAACAAGAAACTGATGAGAACGGA ATTTGCCATACGAATGGGAACAAGAAACTGATGAGAACGGA < 41bp 1 0.352125546210641 1 0.434370934963226 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WWOX ENSG00000186153 CDS Human protein_coding chr16:78143695 chr16:78143687 nonsynonymous SNV 0.992 4 13 hm5C_associated_SNPs_33093 0 0 1 0 2 WWOX chr16:78143675 3'AG 78143675 Downstream 13bp
chr16 78143687 78143687 1 + G A SKCM 78143695 + 78143675 78143715 41 ATTTGCCATACGGATGGGAACAAGAAACTGATGAGAACGGA ATTTGCCATACGAATGGGAACAAGAAACTGATGAGAACGGA < 41bp 1 0.352125546210641 1 0.434370934963226 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WWOX ENSG00000186153 CDS Human protein_coding chr16:78143695 chr16:78143687 nonsynonymous SNV 0.992 4 13 hm5C_associated_SNPs_33093 0 0 1 0 2 WWOX chr16:78143732 5'GT 78143732 Upstream 46bp
chr7 128483328 128483328 1 + G A SKCM 128483319 + 128483299 128483339 41 CCTTCCACATCAAGGTGGACCCATCCCACGATGCCAGCAAA CCTTCCACATCAAGGTGGACCCATCCCACAATGCCAGCAAA < 41bp 1 0.0120283517799525 1 0.206437408924103 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128483319 chr7:128483328 nonsynonymous SNV 0.975 4 30 hm5C_associated_SNPs_33094 0 0 0 0 2 FLNC chr7:128483283 3'AG 128483283 Downstream 46bp
chr7 128483328 128483328 1 + G A SKCM 128483319 + 128483299 128483339 41 CCTTCCACATCAAGGTGGACCCATCCCACGATGCCAGCAAA CCTTCCACATCAAGGTGGACCCATCCCACAATGCCAGCAAA < 41bp 1 0.0120283517799525 1 0.206437408924103 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128483319 chr7:128483328 nonsynonymous SNV 0.975 4 30 hm5C_associated_SNPs_33094 0 0 0 0 2 FLNC chr7:128483373 5'GT 128483373 Upstream 46bp
chr12 70704717 70704717 1 + G A SKCM 70704725 + 70704705 70704745 41 AAGAAGTTTGTAGAGGGGGTCGACAGTGACTACCATGACGA AAGAAGTTTGTAAAGGGGGTCGACAGTGACTACCATGACGA < 41bp 1 0.666475069741208 1 0.380755633115768 experiment 0.667049860517584 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT2 ENSG00000111596 CDS Human protein_coding chr12:70704725 chr12:70704717 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_33102 0 0 1 0 2 CNOT2 chr12:70704675 3'AG 70704675 Downstream 43bp
chr12 70704717 70704717 1 + G A SKCM 70704725 + 70704705 70704745 41 AAGAAGTTTGTAGAGGGGGTCGACAGTGACTACCATGACGA AAGAAGTTTGTAAAGGGGGTCGACAGTGACTACCATGACGA < 41bp 1 0.666475069741208 1 0.380755633115768 experiment 0.667049860517584 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT2 ENSG00000111596 CDS Human protein_coding chr12:70704725 chr12:70704717 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_33102 0 0 1 0 2 CNOT2 chr12:70704797 5'GT 70704797 Upstream 81bp
chr1 12027068 12027068 1 + C T SKCM 12027067 + 12027047 12027087 41 TGCCCGGATGTCTATTGGTTCCCCATCTTCACGGAGGTGGC TGCCCGGATGTCTATTGGTTCTCCATCTTCACGGAGGTGGC < 41bp 1 0.746049177944377 1 0.8616583943367 experiment 0.507901644111246 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027067 chr1:12027068 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_33104 0 0 1 0 2 PLOD1 chr1:12027044 3'AG 12027044 Downstream 25bp
chr1 12027068 12027068 1 + C T SKCM 12027067 + 12027047 12027087 41 TGCCCGGATGTCTATTGGTTCCCCATCTTCACGGAGGTGGC TGCCCGGATGTCTATTGGTTCTCCATCTTCACGGAGGTGGC < 41bp 1 0.746049177944377 1 0.8616583943367 experiment 0.507901644111246 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027067 chr1:12027068 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_33104 0 0 1 0 2 PLOD1 chr1:12027148 5'GT 12027148 Upstream 81bp
chr1 12027068 12027068 1 + C T SKCM 12027087 + 12027067 12027107 41 CCCCATCTTCACGGAGGTGGCCTGTGATGAGCTGGTGGAGG CTCCATCTTCACGGAGGTGGCCTGTGATGAGCTGGTGGAGG < 41bp 1 0.194668549742267 1 0.0957699418067932 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027087 chr1:12027068 nonsynonymous SNV 0.999 5 2 hm5C_associated_SNPs_33105 0 0 1 0 2 PLOD1 chr1:12027044 3'AG 12027044 Downstream 25bp
chr1 12027068 12027068 1 + C T SKCM 12027087 + 12027067 12027107 41 CCCCATCTTCACGGAGGTGGCCTGTGATGAGCTGGTGGAGG CTCCATCTTCACGGAGGTGGCCTGTGATGAGCTGGTGGAGG < 41bp 1 0.194668549742267 1 0.0957699418067932 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027087 chr1:12027068 nonsynonymous SNV 0.999 5 2 hm5C_associated_SNPs_33105 0 0 1 0 2 PLOD1 chr1:12027148 5'GT 12027148 Upstream 81bp
chr3 33877671 33877671 1 + C T SKCM 33877665 + 33877645 33877685 41 ATGACTTCATTTATCATGATCGAGTTCCAGACCTTAAAGAT ATGACTTCATTTATCATGATCGAGTTTCAGACCTTAAAGAT < 41bp 1 0.51644307680478 1 0.517002761363983 experiment 0.96711384639044 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33877665 chr3:33877671 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_33106 0 0 1 0 1 PDCD6IP chr3:33877758 5'GT 33877758 Upstream 88bp
chr22 26299772 26299772 1 + G A SKCM 26299787 + 26299767 26299807 41 AGCAGGAAAACACCATCAAGCAGCTGGAGCAGGTAGGAAAG AGCAGAAAAACACCATCAAGCAGCTGGAGCAGGTAGGAAAG < 41bp 1 0.355892475429668 1 0.73541122674942 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26299787 chr22:26299772 nonsynonymous SNV 0.997 2 6 hm5C_associated_SNPs_33107 0 0 0 0 1 MYO18B chr22:26299798 5'GT 26299798 Upstream 27bp
chr1 32691786 32691786 1 + C T SKCM 32691784 + 32691764 32691804 41 GACTCCAGGAAAGCAGCTGGCCCTTCTCAAGACCAATTCGG GACTCCAGGAAAGCAGCTGGCCTTTCTCAAGACCAATTCGG < 41bp 1 0.051145512428147 1 0.0220496654510498 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF3I ENSG00000084623 CDS Human protein_coding chr1:32691784 chr1:32691786 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_33109 0 0 1 0 1 EIF3I chr1:32691772 3'AG 32691772 Downstream 15bp
chr5 34936318 34936318 1 + G A SKCM 34936300 + 34936280 34936320 41 AAATGATTGCCAAGGAAGAACTAGAATCTGTGTTAGAGGAA AAATGATTGCCAAGGAAGAACTAGAATCTGTGTTAGAGAAA < 41bp 1 0.721354307018357 1 0.422504365444183 experiment 0.557291385963286 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34936300 chr5:34936318 nonsynonymous SNV 0.110 0 39 hm5C_associated_SNPs_33110 0 0 1 0 1 DNAJC21 chr5:34936371 5'GT 34936371 Upstream 54bp
chr12 22811976 22811976 1 + C T SKCM 22811993 + 22811973 22812013 41 ATCCATGCTATTCATGCACACAATGGCTGGATCCCCAAATC ATCTATGCTATTCATGCACACAATGGCTGGATCCCCAAATC < 41bp 1 0.422044021384137 1 0.22485426068306 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ETNK1 ENSG00000139163 CDS Human protein_coding chr12:22811993 chr12:22811976 nonsynonymous SNV 1.000 5 4 hm5C_associated_SNPs_33111 0 0 1 0 1 ETNK1 chr12:22811948 3'AG 22811948 Downstream 29bp
chr9 138662882 138662882 1 + G A SKCM 138662890 + 138662870 138662910 41 GGGCCTTCTCGGGGCAGGGGCTGCACGAGGGTCCGGCCCGC GGGCCTTCTCGGAGCAGGGGCTGCACGAGGGTCCGGCCCGC < 41bp 1 0.649120443764976 1 0.479114711284637 experiment 0.701759112470049 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control KCNT1 ENSG00000107147 CDS Human protein_coding chr9:138662890 chr9:138662882 nonsynonymous SNV 0.070 0 13 hm5C_associated_SNPs_33112 0 0 0 0 1 KCNT1 chr9:138662941 5'GT 138662941 Upstream 60bp
chr15 74240205 74240205 1 + G A SKCM 74240213 + 74240193 74240233 41 TGCCAGTGGATCGACATAACCGACGTGCAGCCTGGGAACTA TGCCAGTGGATCAACATAACCGACGTGCAGCCTGGGAACTA < 41bp 1 0.631497631142702 1 0.325379520654678 experiment 0.737004737714596 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LOXL1 ENSG00000129038 CDS Human protein_coding chr15:74240213 chr15:74240205 nonsynonymous SNV 0.698 4 13 hm5C_associated_SNPs_33114 0 0 0 0 2 LOXL1 chr15:74240148 3'AG 74240148 Downstream 58bp
chr15 74240205 74240205 1 + G A SKCM 74240213 + 74240193 74240233 41 TGCCAGTGGATCGACATAACCGACGTGCAGCCTGGGAACTA TGCCAGTGGATCAACATAACCGACGTGCAGCCTGGGAACTA < 41bp 1 0.631497631142702 1 0.325379520654678 experiment 0.737004737714596 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LOXL1 ENSG00000129038 CDS Human protein_coding chr15:74240213 chr15:74240205 nonsynonymous SNV 0.698 4 13 hm5C_associated_SNPs_33114 0 0 0 0 2 LOXL1 chr15:74240243 5'GT 74240243 Upstream 39bp
chr16 30680186 30680186 1 + C T SKCM 30680193 + 30680173 30680213 41 CTGCACCGCAGTCCTCTGACCTTTCCTGCCTGGGTCCGGCC CTGCACCGCAGTCTTCTGACCTTTCCTGCCTGGGTCCGGCC < 41bp 1 0.0585545147838986 1 0.0213958919048309 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBRS ENSG00000156860 CDS Human protein_coding chr16:30680193 chr16:30680186 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_33115 0 0 1 0 1 FBRS chr16:30680093 3'AG 30680093 Downstream 94bp
chr19 13049538 13049538 1 + C T SKCM 13049544 + 13049524 13049564 41 CTCCTCGGCCTGGCCGTCGCCGAGCCTGCCGTCTACTTCAA CTCCTCGGCCTGGCTGTCGCCGAGCCTGCCGTCTACTTCAA < 41bp 1 0.661758121823731 1 0.66342306137085 experiment 0.676483756352539 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13049544 chr19:13049538 synonymous SNV . 0 15 hm5C_associated_SNPs_33116 0 0 1 0 1 CALR chr19:13049584 5'GT 13049584 Upstream 47bp
chr19 13049538 13049538 1 + C T SKCM 13049553 + 13049533 13049573 41 CTGGCCGTCGCCGAGCCTGCCGTCTACTTCAAGGAGCAGTT CTGGCTGTCGCCGAGCCTGCCGTCTACTTCAAGGAGCAGTT < 41bp 1 0.23177145897809 1 0.22746953368187 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13049553 chr19:13049538 synonymous SNV . 0 6 hm5C_associated_SNPs_33117 0 0 1 0 1 CALR chr19:13049584 5'GT 13049584 Upstream 47bp
chr5 176522656 176522656 1 + T A SKCM 176522651 + 176522631 176522671 41 TCCTCGGAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGG TCCTCGGAGCAGTGAGGGGCCGCTCACCTTCCCAGTCCTGG < 41bp 1 0.143401367327738 1 0.0983187556266785 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522651 chr5:176522656 nonsynonymous SNV 0.768 2 26 hm5C_associated_SNPs_33118 0 0 1 0 1 FGFR4 chr5:176522724 5'GT 176522724 Upstream 69bp
chr5 176522656 176522656 1 + T A SKCM 176522657 + 176522637 176522677 41 GAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGGTCTCCT GAGCAGTGAGGGGCCGCTCACCTTCCCAGTCCTGGTCTCCT < 41bp 1 0.036707424829559 1 0.0403641760349274 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522657 chr5:176522656 nonsynonymous SNV 0.768 2 20 hm5C_associated_SNPs_33119 0 0 1 0 1 FGFR4 chr5:176522724 5'GT 176522724 Upstream 69bp
chr19 18975031 18975031 1 + C T SKCM 18975023 + 18975003 18975043 41 ATGTATGATGCCCGGGAGGCCATCATCCCAGGCTCCGTCTA ATGTATGATGCCCGGGAGGCCATCATCCTAGGCTCCGTCTA < 41bp 1 0.506199142553254 1 0.0751229524612427 experiment 0.987601714893492 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18975023 chr19:18975031 nonsynonymous SNV 0.951 3 29 hm5C_associated_SNPs_33125 0 0 1 0 1 UPF1 chr19:18974979 3'AG 18974979 Downstream 53bp
chr19 59060583 59060583 1 + C T SKCM 59060584 + 59060564 59060604 41 GAACCCCTGGTGCCCCACCCCTGGCTGGCATGGCCATTGTC GAACCCCTGGTGCCCCACCTCTGGCTGGCATGGCCATTGTC < 41bp 1 0.571110659157556 1 0.522651255130768 experiment 0.857778681684888 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59060584 chr19:59060583 synonymous SNV . 0 20 hm5C_associated_SNPs_33126 0 0 1 0 1 TRIM28 chr19:59060607 5'GT 59060607 Upstream 25bp
chr19 59060583 59060583 1 + C T SKCM 59060588 + 59060568 59060608 41 CCCTGGTGCCCCACCCCTGGCTGGCATGGCCATTGTCAAGG CCCTGGTGCCCCACCTCTGGCTGGCATGGCCATTGTCAAGG < 41bp 1 0.47844347260764 1 0.0364223420619965 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59060588 chr19:59060583 synonymous SNV . 0 16 hm5C_associated_SNPs_33127 0 0 1 0 1 TRIM28 chr19:59060607 5'GT 59060607 Upstream 25bp
chr19 59060583 59060583 1 + C T SKCM 59060592 + 59060572 59060612 41 GGTGCCCCACCCCTGGCTGGCATGGCCATTGTCAAGGTAAG GGTGCCCCACCTCTGGCTGGCATGGCCATTGTCAAGGTAAG < 41bp 1 0.155442248698678 1 0.103716641664505 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59060592 chr19:59060583 synonymous SNV . 0 12 hm5C_associated_SNPs_33128 0 0 1 0 1 TRIM28 chr19:59060607 5'GT 59060607 Upstream 25bp
chr6 31912780 31912780 1 + C T SKCM 31912772 + 31912752 31912792 41 GGCAGGAGAATCTGGGGGAGCAGTTTTCCTTGAGCGGAGAT GGCAGGAGAATCTGGGGGAGCAGTTTTCTTTGAGCGGAGAT < 41bp 1 0.161462290392578 1 0.289608031511307 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C2 ENSG00000166278 CDS Human protein_coding chr6:31912772 chr6:31912780 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_33129 0 0 1 0 2 C2 chr6:31912757 3'AG 31912757 Downstream 24bp
chr6 31912780 31912780 1 + C T SKCM 31912772 + 31912752 31912792 41 GGCAGGAGAATCTGGGGGAGCAGTTTTCCTTGAGCGGAGAT GGCAGGAGAATCTGGGGGAGCAGTTTTCTTTGAGCGGAGAT < 41bp 1 0.161462290392578 1 0.289608031511307 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C2 ENSG00000166278 CDS Human protein_coding chr6:31912772 chr6:31912780 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_33129 0 0 1 0 2 C2 chr6:31912806 5'GT 31912806 Upstream 27bp
chr6 31929390 31929390 1 + C T SKCM 31929378 + 31929358 31929398 41 CAGAGCCTCCATCTCAGGAGCAGTGGGCCATCCCTGTGGAC CAGAGCCTCCATCTCAGGAGCAGTGGGCCATCTCTGTGGAC < 41bp 1 0.265193829307469 1 0.264280259609222 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31929378 chr6:31929390 nonsynonymous SNV 0.605 1 33 hm5C_associated_SNPs_33130 0 0 1 0 2 SKIV2L chr6:31929324 3'AG 31929324 Downstream 67bp
chr6 31929390 31929390 1 + C T SKCM 31929378 + 31929358 31929398 41 CAGAGCCTCCATCTCAGGAGCAGTGGGCCATCCCTGTGGAC CAGAGCCTCCATCTCAGGAGCAGTGGGCCATCTCTGTGGAC < 41bp 1 0.265193829307469 1 0.264280259609222 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31929378 chr6:31929390 nonsynonymous SNV 0.605 1 33 hm5C_associated_SNPs_33130 0 0 1 0 2 SKIV2L chr6:31929452 5'GT 31929452 Upstream 63bp
chr12 112227679 112227679 1 + G A SKCM 112227678 + 112227658 112227698 41 GGGAAAACCATCCCCATTGACGGAGACTTCTTCAGCTACAC GGGAAAACCATCCCCATTGACAGAGACTTCTTCAGCTACAC < 41bp 1 0.698957956667367 1 0.805547416210175 experiment 0.602084086665265 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112227678 chr12:112227679 nonsynonymous SNV 0.795 4 22 hm5C_associated_SNPs_33131 0 0 1 0 2 ALDH2 chr12:112227627 3'AG 112227627 Downstream 53bp
chr12 112227679 112227679 1 + G A SKCM 112227678 + 112227658 112227698 41 GGGAAAACCATCCCCATTGACGGAGACTTCTTCAGCTACAC GGGAAAACCATCCCCATTGACAGAGACTTCTTCAGCTACAC < 41bp 1 0.698957956667367 1 0.805547416210175 experiment 0.602084086665265 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112227678 chr12:112227679 nonsynonymous SNV 0.795 4 22 hm5C_associated_SNPs_33131 0 0 1 0 2 ALDH2 chr12:112227738 5'GT 112227738 Upstream 60bp
chr14 21544735 21544735 1 + C T SKCM 21544752 + 21544732 21544772 41 ATCCTCCCCTTGTTCAGCGGCTGCTGATTCTCATTCATGAT ATCTTCCCCTTGTTCAGCGGCTGCTGATTCTCATTCATGAT < 41bp 1 0.140350806658048 1 0.112016052007675 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21544752 chr14:21544735 nonsynonymous SNV 0.943 0 4 hm5C_associated_SNPs_33132 0 0 1 0 3 ARHGEF40 chr14:21544695 3'AG 21544695 Downstream 41bp
chr14 21544735 21544735 1 + C T SKCM 21544752 + 21544732 21544772 41 ATCCTCCCCTTGTTCAGCGGCTGCTGATTCTCATTCATGAT ATCTTCCCCTTGTTCAGCGGCTGCTGATTCTCATTCATGAT < 41bp 1 0.140350806658048 1 0.112016052007675 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21544752 chr14:21544735 nonsynonymous SNV 0.943 0 4 hm5C_associated_SNPs_33132 0 0 1 0 3 ARHGEF40 chr14:21544722 3'AG 21544722 Downstream 14bp
chr14 21544735 21544735 1 + C T SKCM 21544752 + 21544732 21544772 41 ATCCTCCCCTTGTTCAGCGGCTGCTGATTCTCATTCATGAT ATCTTCCCCTTGTTCAGCGGCTGCTGATTCTCATTCATGAT < 41bp 1 0.140350806658048 1 0.112016052007675 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21544752 chr14:21544735 nonsynonymous SNV 0.943 0 4 hm5C_associated_SNPs_33132 0 0 1 0 3 ARHGEF40 chr14:21544802 5'GT 21544802 Upstream 68bp
chr16 57786721 57786721 1 + C T SKCM 57786702 + 57786682 57786722 41 TGGCCCAGGAGCGTCCTCTTCAACCCAGACGGCTGCTGCCT TGGCCCAGGAGCGTCCTCTTCAACCCAGACGGCTGCTGCTT < 41bp 1 0.43385934779962 1 0.189834415912628 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57786702 chr16:57786721 synonymous SNV . 0 40 hm5C_associated_SNPs_33133 0 0 1 0 1 KATNB1 chr16:57786690 3'AG 57786690 Downstream 32bp
chr16 5128006 5128006 1 + C T SKCM 5128001 + 5127981 5128021 41 ATGAAGCTGGGCAGCATGCACTCTCCGTTCAGGGCCCGGTA ATGAAGCTGGGCAGCATGCACTCTCTGTTCAGGGCCCGGTA < 41bp 1 0.420508702377621 1 0.0296281278133392 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128001 chr16:5128006 nonsynonymous SNV 0.001 1 26 hm5C_associated_SNPs_33134 0 0 1 0 2 ALG1 chr16:5127908 3'AG 5127908 Downstream 99bp
chr16 5128006 5128006 1 + C T SKCM 5128001 + 5127981 5128021 41 ATGAAGCTGGGCAGCATGCACTCTCCGTTCAGGGCCCGGTA ATGAAGCTGGGCAGCATGCACTCTCTGTTCAGGGCCCGGTA < 41bp 1 0.420508702377621 1 0.0296281278133392 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128001 chr16:5128006 nonsynonymous SNV 0.001 1 26 hm5C_associated_SNPs_33134 0 0 1 0 2 ALG1 chr16:5128018 5'GT 5128018 Upstream 13bp
chr5 231076 231076 1 + C T SKCM 231073 + 231053 231093 41 CCATGATCACCAGGGCAGGCCTTCCTTGCCAGGACCTAGAG CCATGATCACCAGGGCAGGCCTTTCTTGCCAGGACCTAGAG < 41bp 1 0.102008506043391 1 0.0595802068710327 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SDHA ENSG00000073578 CDS Human protein_coding chr5:231073 chr5:231076 nonsynonymous SNV 0.834 1 24 hm5C_associated_SNPs_33135 0 0 1 0 2 SDHA chr5:230991 3'AG 230991 Downstream 86bp
chr5 231076 231076 1 + C T SKCM 231073 + 231053 231093 41 CCATGATCACCAGGGCAGGCCTTCCTTGCCAGGACCTAGAG CCATGATCACCAGGGCAGGCCTTTCTTGCCAGGACCTAGAG < 41bp 1 0.102008506043391 1 0.0595802068710327 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SDHA ENSG00000073578 CDS Human protein_coding chr5:231073 chr5:231076 nonsynonymous SNV 0.834 1 24 hm5C_associated_SNPs_33135 0 0 1 0 2 SDHA chr5:231115 5'GT 231115 Upstream 40bp
chr9 108510368 108510368 1 + C T SKCM 108510356 + 108510336 108510376 41 AATGTGTTTTATTTTCAGCCCTGCCAAGGTAACCCTGCTGG AATGTGTTTTATTTTCAGCCCTGCCAAGGTAATCCTGCTGG < 41bp 1 0.251676044360811 1 0.0616824328899384 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM38B ENSG00000095209 CDS Human protein_coding chr9:108510356 chr9:108510368 nonsynonymous SNV 0.874 4 33 hm5C_associated_SNPs_33136 0 0 1 0 1 TMEM38B chr9:108510354 3'AG 108510354 Downstream 15bp
chr3 124053179 124053179 1 + C T SKCM 124053164 + 124053144 124053184 41 GCTGCAGCGGCCCCTGAGCCCTGGGAACTCCGAATCCCTCA GCTGCAGCGGCCCCTGAGCCCTGGGAACTCCGAATTCCTCA < 41bp 1 0.606637768727343 1 0.81840592622757 experiment 0.786724462545315 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KALRN ENSG00000160145 CDS Human protein_coding chr3:124053164 chr3:124053179 nonsynonymous SNV 0.984 3 36 hm5C_associated_SNPs_33139 0 0 0 0 1 KALRN chr3:124053112 3'AG 124053112 Downstream 68bp
chr7 129946648 129946648 1 + G A SKCM 129946651 + 129946631 129946671 41 TATCTGATTACCAGAGGGATCCAGCTATCACCTCCATCTTG TATCTGATTACCAGAGGAATCCAGCTATCACCTCCATCTTG < 41bp 1 0.279537577750416 1 0.497182995080948 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129946651 chr7:129946648 nonsynonymous SNV 0.997 1 18 hm5C_associated_SNPs_33141 0 0 0 0 2 CPA4 chr7:129946627 3'AG 129946627 Downstream 22bp
chr7 129946648 129946648 1 + G A SKCM 129946651 + 129946631 129946671 41 TATCTGATTACCAGAGGGATCCAGCTATCACCTCCATCTTG TATCTGATTACCAGAGGAATCCAGCTATCACCTCCATCTTG < 41bp 1 0.279537577750416 1 0.497182995080948 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129946651 chr7:129946648 nonsynonymous SNV 0.997 1 18 hm5C_associated_SNPs_33141 0 0 0 0 2 CPA4 chr7:129946737 5'GT 129946737 Upstream 90bp
chr12 7177206 7177206 1 + G A SKCM 7177213 + 7177193 7177233 41 ACAGAGGATAATTGGAGGATCCGATGCAGATATTAAAAACT ACAGAGGATAATTAGAGGATCCGATGCAGATATTAAAAACT < 41bp 1 0.0842283351920697 1 0.151225239038467 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C1S ENSG00000182326 CDS Human protein_coding chr12:7177213 chr12:7177206 nonsynonymous SNV 0.068 4 14 hm5C_associated_SNPs_33142 0 0 0 0 1 C1S chr12:7177159 3'AG 7177159 Downstream 48bp
chr13 26923280 26923280 1 + G A SKCM 26923264 + 26923244 26923284 41 TCTTCAAAAGGTGTTTCTGTCTCATGCTGATAGGAAGGTGT TCTTCAAAAGGTGTTTCTGTCTCATGCTGATAGGAAAGTGT < 41bp 1 0.456490067960282 1 0.23614838719368 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK8 ENSG00000132964 CDS Human protein_coding chr13:26923264 chr13:26923280 synonymous SNV . 0 37 hm5C_associated_SNPs_33158 0 0 1 0 2 CDK8 chr13:26923209 3'AG 26923209 Downstream 72bp
chr13 26923280 26923280 1 + G A SKCM 26923264 + 26923244 26923284 41 TCTTCAAAAGGTGTTTCTGTCTCATGCTGATAGGAAGGTGT TCTTCAAAAGGTGTTTCTGTCTCATGCTGATAGGAAAGTGT < 41bp 1 0.456490067960282 1 0.23614838719368 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK8 ENSG00000132964 CDS Human protein_coding chr13:26923264 chr13:26923280 synonymous SNV . 0 37 hm5C_associated_SNPs_33158 0 0 1 0 2 CDK8 chr13:26923319 5'GT 26923319 Upstream 40bp
chr16 29811295 29811295 1 + C T SKCM 29811301 + 29811281 29811321 41 GAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGGAGATCGG GAGGCAAAGAGAGCTCGAGGCCCTGAGGAAGAGGAGATCGG < 41bp 1 0.137687037363034 1 0.103133380413055 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811301 chr16:29811295 synonymous SNV . 0 15 hm5C_associated_SNPs_33159 0 0 1 0 2 KIF22 chr16:29811234 3'AG 29811234 Downstream 62bp
chr16 29811295 29811295 1 + C T SKCM 29811301 + 29811281 29811321 41 GAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGGAGATCGG GAGGCAAAGAGAGCTCGAGGCCCTGAGGAAGAGGAGATCGG < 41bp 1 0.137687037363034 1 0.103133380413055 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811301 chr16:29811295 synonymous SNV . 0 15 hm5C_associated_SNPs_33159 0 0 1 0 2 KIF22 chr16:29811369 5'GT 29811369 Upstream 75bp
chr1 145539064 145539064 1 + C T SKCM 145539084 + 145539064 145539104 41 CTATCACTGTCTCAAGTCATCACTAACAATGTGAGTCTGGT TTATCACTGTCTCAAGTCATCACTAACAATGTGAGTCTGGT < 41bp 1 0.109493557013305 1 0.236164301633835 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ITGA10 ENSG00000143127 CDS Human protein_coding chr1:145539084 chr1:145539064 synonymous SNV . 0 1 hm5C_associated_SNPs_33161 0 0 0 0 2 ITGA10 chr1:145538980 3'AG 145538980 Downstream 85bp
chr1 145539064 145539064 1 + C T SKCM 145539084 + 145539064 145539104 41 CTATCACTGTCTCAAGTCATCACTAACAATGTGAGTCTGGT TTATCACTGTCTCAAGTCATCACTAACAATGTGAGTCTGGT < 41bp 1 0.109493557013305 1 0.236164301633835 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ITGA10 ENSG00000143127 CDS Human protein_coding chr1:145539084 chr1:145539064 synonymous SNV . 0 1 hm5C_associated_SNPs_33161 0 0 0 0 2 ITGA10 chr1:145539093 5'GT 145539093 Upstream 30bp
chr16 29811294 29811294 1 + C T SKCM 29811295 + 29811275 29811315 41 CCACCAGAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGGA CCACCAGAGGCAAAGAGAGTCCGAGGCCCTGAGGAAGAGGA < 41bp 1 0.276720593373582 1 0.723181188106537 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811295 chr16:29811294 nonsynonymous SNV 0.968 0 20 hm5C_associated_SNPs_33163 0 0 1 0 2 KIF22 chr16:29811234 3'AG 29811234 Downstream 61bp
chr16 29811294 29811294 1 + C T SKCM 29811295 + 29811275 29811315 41 CCACCAGAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGGA CCACCAGAGGCAAAGAGAGTCCGAGGCCCTGAGGAAGAGGA < 41bp 1 0.276720593373582 1 0.723181188106537 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811295 chr16:29811294 nonsynonymous SNV 0.968 0 20 hm5C_associated_SNPs_33163 0 0 1 0 2 KIF22 chr16:29811369 5'GT 29811369 Upstream 76bp
chr16 29811294 29811294 1 + C T SKCM 29811301 + 29811281 29811321 41 GAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGGAGATCGG GAGGCAAAGAGAGTCCGAGGCCCTGAGGAAGAGGAGATCGG < 41bp 1 0.132215936773211 1 0.0988064408302307 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811301 chr16:29811294 nonsynonymous SNV 0.968 0 14 hm5C_associated_SNPs_33164 0 0 1 0 2 KIF22 chr16:29811234 3'AG 29811234 Downstream 61bp
chr16 29811294 29811294 1 + C T SKCM 29811301 + 29811281 29811321 41 GAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGGAGATCGG GAGGCAAAGAGAGTCCGAGGCCCTGAGGAAGAGGAGATCGG < 41bp 1 0.132215936773211 1 0.0988064408302307 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811301 chr16:29811294 nonsynonymous SNV 0.968 0 14 hm5C_associated_SNPs_33164 0 0 1 0 2 KIF22 chr16:29811369 5'GT 29811369 Upstream 76bp
chr7 4830461 4830461 1 + C T SKCM 4830446 + 4830426 4830466 41 TGCTGCCCTGCCCAGGTGTCCCCCCCAGGTGGTCACCGTGC TGCTGCCCTGCCCAGGTGTCCCCCCCAGGTGGTCATCGTGC < 41bp 1 0.0703061909291319 1 0.0228690505027771 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4830446 chr7:4830461 nonsynonymous SNV 0.024 3 36 hm5C_associated_SNPs_33165 0 0 1 0 1 AP5Z1 chr7:4830518 5'GT 4830518 Upstream 58bp
chr19 36128155 36128155 1 + A T SKCM 36128142 + 36128122 36128162 41 GCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCCAAGGTGAT GCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCCTAGGTGAT < 41bp 1 0.220535340735172 1 0.498431533575058 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36128142 chr19:36128155 stopgain 1.000 1 34 hm5C_associated_SNPs_33167 0 0 1 0 2 RBM42 chr19:36128060 3'AG 36128060 Downstream 96bp
chr19 36128155 36128155 1 + A T SKCM 36128142 + 36128122 36128162 41 GCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCCAAGGTGAT GCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCCTAGGTGAT < 41bp 1 0.220535340735172 1 0.498431533575058 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36128142 chr19:36128155 stopgain 1.000 1 34 hm5C_associated_SNPs_33167 0 0 1 0 2 RBM42 chr19:36128254 5'GT 36128254 Upstream 100bp
chr2 220366636 220366636 1 + C T SKCM 220366650 + 220366630 220366670 41 CCAGATCCTGGCTGGGAGCCCCGAGGCATTCTTCGTGCTCA CCAGATTCTGGCTGGGAGCCCCGAGGCATTCTTCGTGCTCA < 41bp 1 0.470136957367429 1 0.379182100296021 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GMPPA ENSG00000144591 CDS Human protein_coding chr2:220366650 chr2:220366636 synonymous SNV . 0 7 hm5C_associated_SNPs_33168 0 0 1 0 1 GMPPA chr2:220366573 3'AG 220366573 Downstream 64bp
chr2 160053229 160053229 1 + C T SKCM 160053224 + 160053204 160053244 41 CTTGTGAGTGGTCGCCGGGTCCTCCCCAGCCAGGCACCCTG CTTGTGAGTGGTCGCCGGGTCCTCCTCAGCCAGGCACCCTG < 41bp 1 0.104496318173053 1 0.0434953570365906 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160053224 chr2:160053229 synonymous SNV . 0 26 hm5C_associated_SNPs_33169 0 0 1 0 1 TANC1 chr2:160053304 5'GT 160053304 Upstream 76bp
chr2 160053229 160053229 1 + C T SKCM 160053230 + 160053210 160053250 41 AGTGGTCGCCGGGTCCTCCCCAGCCAGGCACCCTGAGGAAG AGTGGTCGCCGGGTCCTCCTCAGCCAGGCACCCTGAGGAAG < 41bp 1 0.628359616359399 1 0.513895750045776 experiment 0.743280767281203 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160053230 chr2:160053229 synonymous SNV . 0 20 hm5C_associated_SNPs_33170 0 0 1 0 1 TANC1 chr2:160053304 5'GT 160053304 Upstream 76bp
chr17 4498564 4498564 1 + G A SKCM 4498575 + 4498555 4498595 41 CGCACCTCGGAGGCGCAGGCCCGGAAAGCATTGTTTGAGAA CGCACCTCGAAGGCGCAGGCCCGGAAAGCATTGTTTGAGAA < 41bp 1 0.610990237160586 1 0.15576234459877 experiment 0.778019525678828 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4498575 chr17:4498564 nonsynonymous SNV 0.967 1 10 hm5C_associated_SNPs_33171 0 0 0 0 1 SMTNL2 chr17:4498622 5'GT 4498622 Upstream 59bp
chr16 28994599 28994599 1 + C T SKCM 28994609 + 28994589 28994629 41 GGAGCCCCTACCTCATTGGCCTGGTGAGCATTATTTCTTGG GGAGCCCCTATCTCATTGGCCTGGTGAGCATTATTTCTTGG < 41bp 1 0.505811788557597 1 0.0740248560905457 experiment 0.988376422884805 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28994609 chr16:28994599 synonymous SNV . 0 11 hm5C_associated_SNPs_33173 0 0 1 0 2 SPNS1 chr16:28994513 3'AG 28994513 Downstream 87bp
chr16 28994599 28994599 1 + C T SKCM 28994609 + 28994589 28994629 41 GGAGCCCCTACCTCATTGGCCTGGTGAGCATTATTTCTTGG GGAGCCCCTATCTCATTGGCCTGGTGAGCATTATTTCTTGG < 41bp 1 0.505811788557597 1 0.0740248560905457 experiment 0.988376422884805 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28994609 chr16:28994599 synonymous SNV . 0 11 hm5C_associated_SNPs_33173 0 0 1 0 2 SPNS1 chr16:28994611 5'GT 28994611 Upstream 13bp
chr12 132514418 132514418 1 + C T SKCM 132514398 + 132514378 132514418 41 GCAGCTGCGGCAGACCACGGCTCCACGCCTGCTGCAGTTCC GCAGCTGCGGCAGACCACGGCTCCACGCCTGCTGCAGTTCT < 41bp 1 0.449940629918484 1 0.977134585380554 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132514398 chr12:132514418 nonsynonymous SNV 0.867 4 41 hm5C_associated_SNPs_33174 0 0 1 0 1 EP400 chr12:132514448 5'GT 132514448 Upstream 31bp
chr3 16312571 16312571 1 + C T SKCM 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTCAGCACTTTGCGCCACCTTACTTTAACCAGGTGA < 41bp 1 0.20883431791402 1 0.201472550630569 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312571 synonymous SNV . 0 30 hm5C_associated_SNPs_33175 0 0 1 0 1 OXNAD1 chr3:16312578 5'GT 16312578 Upstream 8bp
chr22 39078936 39078936 1 + C T SKCM 39078940 + 39078920 39078960 41 CTTTATGATCCTGGTTCTTCCCGTTGTCTTTGAGACGGAGA CTTTATGATCCTGGTTTTTCCCGTTGTCTTTGAGACGGAGA < 41bp 1 0.325450246601276 1 0.174127250909805 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078940 chr22:39078936 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_33177 0 0 1 0 2 TOMM22 chr22:39078884 3'AG 39078884 Downstream 53bp
chr22 39078936 39078936 1 + C T SKCM 39078940 + 39078920 39078960 41 CTTTATGATCCTGGTTCTTCCCGTTGTCTTTGAGACGGAGA CTTTATGATCCTGGTTTTTCCCGTTGTCTTTGAGACGGAGA < 41bp 1 0.325450246601276 1 0.174127250909805 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078940 chr22:39078936 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_33177 0 0 1 0 2 TOMM22 chr22:39079001 5'GT 39079001 Upstream 66bp
chr9 131843440 131843440 1 + C T SKCM 131843453 + 131843433 131843473 41 CGCTCCCCGCTTCATGGCGGCCGGTGACCCTCACCCACGTC CGCTCCCTGCTTCATGGCGGCCGGTGACCCTCACCCACGTC < 41bp 1 0.370805002071033 1 0.292313039302826 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131843453 chr9:131843440 synonymous SNV . 0 8 hm5C_associated_SNPs_33178 0 0 1 0 1 DOLPP1 chr9:131843486 5'GT 131843486 Upstream 47bp
chr2 241514990 241514990 1 + C T SKCM 241514997 + 241514977 241515017 41 TCCTGAGCTTCTTCCCGGAGCTGAAGGAGCAGAGCGTGGAC TCCTGAGCTTCTTTCCGGAGCTGAAGGAGCAGAGCGTGGAC < 41bp 1 0.584601003223491 1 0.26788055896759 experiment 0.830797993553018 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241514997 chr2:241514990 synonymous SNV . 0 14 hm5C_associated_SNPs_33179 0 0 1 0 1 RNPEPL1 chr2:241515027 5'GT 241515027 Upstream 38bp
chr1 204092086 204092086 1 + C T SKCM 204092082 + 204092062 204092102 41 GATGGCTCCCCCAACACCCCCTTCCGTAAGGTATGGTCCCC GATGGCTCCCCCAACACCCCCTTCTGTAAGGTATGGTCCCC < 41bp 1 0.148882499912067 1 0.0899553298950195 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SOX13 ENSG00000143842 CDS Human protein_coding chr1:204092082 chr1:204092086 nonsynonymous SNV 0.600 5 25 hm5C_associated_SNPs_33181 0 0 0 0 1 SOX13 chr1:204092091 5'GT 204092091 Upstream 6bp
chr1 204092085 204092085 1 + C A SKCM 204092082 + 204092062 204092102 41 GATGGCTCCCCCAACACCCCCTTCCGTAAGGTATGGTCCCC GATGGCTCCCCCAACACCCCCTTACGTAAGGTATGGTCCCC < 41bp 1 0.0824903227696969 1 0.090589165687561 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SOX13 ENSG00000143842 CDS Human protein_coding chr1:204092082 chr1:204092085 nonsynonymous SNV 0.611 2 24 hm5C_associated_SNPs_33182 0 0 0 0 1 SOX13 chr1:204092091 5'GT 204092091 Upstream 7bp
chr19 16204368 16204368 1 + A G SKCM 16204363 + 16204343 16204383 41 CAGTATTCTGAAAAGGAGGACAAATATGAAGAAGAAATTAA CAGTATTCTGAAAAGGAGGACAAATGTGAAGAAGAAATTAA < 41bp 1 0.0683312552533882 1 0.240966767072678 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPM4 ENSG00000167460 CDS Human protein_coding chr19:16204363 chr19:16204368 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_33183 0 0 1 0 2 TPM4 chr19:16204346 3'AG 16204346 Downstream 23bp
chr19 16204368 16204368 1 + A G SKCM 16204363 + 16204343 16204383 41 CAGTATTCTGAAAAGGAGGACAAATATGAAGAAGAAATTAA CAGTATTCTGAAAAGGAGGACAAATGTGAAGAAGAAATTAA < 41bp 1 0.0683312552533882 1 0.240966767072678 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPM4 ENSG00000167460 CDS Human protein_coding chr19:16204363 chr19:16204368 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_33183 0 0 1 0 2 TPM4 chr19:16204408 5'GT 16204408 Upstream 41bp
chr7 79842145 79842145 1 + C T SKCM 79842156 + 79842136 79842176 41 AGAAAAAATCAAAAAGAGCCCTCTCACTATATGCTATCCAG AGAAAAAATTAAAAAGAGCCCTCTCACTATATGCTATCCAG < 41bp 1 0.131898041021775 1 0.0796118676662445 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79842156 chr7:79842145 synonymous SNV . 0 10 hm5C_associated_SNPs_33184 0 0 1 0 1 GNAI1 chr7:79842185 5'GT 79842185 Upstream 41bp
chr2 11312055 11312055 1 + T G SKCM 11312065 + 11312045 11312085 41 AAACAGAATCTATGTACTTTCATCAGCGCGGCCAGTAAGTT AAACAGAATCGATGTACTTTCATCAGCGCGGCCAGTAAGTT < 41bp 1 0.597405384804364 1 0.144860744476318 experiment 0.805189230391272 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11312065 chr2:11312055 nonsynonymous SNV 0.008 3 11 hm5C_associated_SNPs_33185 0 0 0 0 1 PQLC3 chr2:11312051 3'AG 11312051 Downstream 5bp
chr11 63719957 63719957 1 + C T SKCM 63719969 + 63719949 63719989 41 TACCTCATCGCGTGGGAAAACAGCTCCGTCCCTGTTGCCTT TACCTCATTGCGTGGGAAAACAGCTCCGTCCCTGTTGCCTT < 41bp 1 0.656035775939326 1 0.603570818901062 experiment 0.687928448121349 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAA40 ENSG00000110583 CDS Human protein_coding chr11:63719969 chr11:63719957 synonymous SNV . 0 9 hm5C_associated_SNPs_33189 0 0 1 0 2 NAA40 chr11:63719879 3'AG 63719879 Downstream 79bp
chr11 63719957 63719957 1 + C T SKCM 63719969 + 63719949 63719989 41 TACCTCATCGCGTGGGAAAACAGCTCCGTCCCTGTTGCCTT TACCTCATTGCGTGGGAAAACAGCTCCGTCCCTGTTGCCTT < 41bp 1 0.656035775939326 1 0.603570818901062 experiment 0.687928448121349 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAA40 ENSG00000110583 CDS Human protein_coding chr11:63719969 chr11:63719957 synonymous SNV . 0 9 hm5C_associated_SNPs_33189 0 0 1 0 2 NAA40 chr11:63720037 5'GT 63720037 Upstream 81bp
chr2 32897411 32897411 1 + G A SKCM 32897396 + 32897376 32897416 41 TAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCGGATCTG TAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCGAATCTG < 41bp 1 0.17786663465723 1 0.102902591228485 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32897396 chr2:32897411 nonsynonymous SNV 0.720 1 36 hm5C_associated_SNPs_33190 0 0 1 0 2 TTC27 chr2:32897339 3'AG 32897339 Downstream 73bp
chr2 32897411 32897411 1 + G A SKCM 32897396 + 32897376 32897416 41 TAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCGGATCTG TAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCGAATCTG < 41bp 1 0.17786663465723 1 0.102902591228485 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32897396 chr2:32897411 nonsynonymous SNV 0.720 1 36 hm5C_associated_SNPs_33190 0 0 1 0 2 TTC27 chr2:32897451 5'GT 32897451 Upstream 41bp
chr19 49967944 49967944 1 + C T SKCM 49967942 + 49967922 49967962 41 CCTGCCCGGCTGTCCTGCCTCTCCAAGAACCTGAACTATGA CCTGCCCGGCTGTCCTGCCTCTTCAAGAACCTGAACTATGA < 41bp 1 0.505943044563637 1 0.72943776845932 experiment 0.988113910872725 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ALDH16A1 ENSG00000161618 CDS Human other chr19:49967942 chr19:49967944 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_33191 0 0 0 0 2 ALDH16A1 chr19:49967889 3'AG 49967889 Downstream 56bp
chr19 49967944 49967944 1 + C T SKCM 49967942 + 49967922 49967962 41 CCTGCCCGGCTGTCCTGCCTCTCCAAGAACCTGAACTATGA CCTGCCCGGCTGTCCTGCCTCTTCAAGAACCTGAACTATGA < 41bp 1 0.505943044563637 1 0.72943776845932 experiment 0.988113910872725 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49967942 chr19:49967944 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_33191 0 0 0 0 2 ALDH16A1 chr19:49968019 5'GT 49968019 Upstream 76bp
chr12 53427596 53427596 1 + C T SKCM 53427592 + 53427572 53427612 41 AAGTTTCATTTAACTTAGGTCCCCCCCAAAGACCCAAACTG AAGTTTCATTTAACTTAGGTCCCCTCCAAAGACCCAAACTG < 41bp 1 0.0609808319369322 1 0.0955252945423126 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53427592 chr12:53427596 nonsynonymous SNV 0.896 1 25 hm5C_associated_SNPs_33192 0 0 1 0 1 EIF4B chr12:53427590 3'AG 53427590 Downstream 7bp
chr11 75279839 75279839 1 + C T SKCM 75279855 + 75279835 75279875 41 CGGTCCTATACCGTGGGTGTCATGATGATGCACCGGACAGG CGGTTCTATACCGTGGGTGTCATGATGATGCACCGGACAGG < 41bp 1 0.56349209290398 1 0.177629977464676 experiment 0.873015814192039 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279855 chr11:75279839 nonsynonymous SNV 0.984 3 5 hm5C_associated_SNPs_33193 0 0 1 0 2 SERPINH1 chr11:75279776 3'AG 75279776 Downstream 64bp
chr11 75279839 75279839 1 + C T SKCM 75279855 + 75279835 75279875 41 CGGTCCTATACCGTGGGTGTCATGATGATGCACCGGACAGG CGGTTCTATACCGTGGGTGTCATGATGATGCACCGGACAGG < 41bp 1 0.56349209290398 1 0.177629977464676 experiment 0.873015814192039 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279855 chr11:75279839 nonsynonymous SNV 0.984 3 5 hm5C_associated_SNPs_33193 0 0 1 0 2 SERPINH1 chr11:75279874 5'GT 75279874 Upstream 36bp
chr19 35504577 35504577 1 + C T SKCM 35504562 + 35504542 35504582 41 CGTGGCCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGA CGTGGCCATGTCACGCCCAACCTTTCCCGAGCCAGTAGCGA < 41bp 1 0.0170689314670796 1 0.0491397380828857 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504562 chr19:35504577 synonymous SNV . 0 36 hm5C_associated_SNPs_33194 0 0 1 0 1 GRAMD1A chr19:35504595 5'GT 35504595 Upstream 19bp
chr19 35504577 35504577 1 + C T SKCM 35504567 + 35504547 35504587 41 CCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGACGCAG CCATGTCACGCCCAACCTTTCCCGAGCCAGTAGCGACGCAG < 41bp 1 0.721087801185525 1 0.328398585319519 experiment 0.55782439762895 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504567 chr19:35504577 synonymous SNV . 0 31 hm5C_associated_SNPs_33195 0 0 1 0 1 GRAMD1A chr19:35504595 5'GT 35504595 Upstream 19bp
chr1 39776643 39776643 1 + G A SKCM 39776662 + 39776642 39776682 41 GGACAATGCATTAAGGATTGCAGAGCAAGAGGTAAGCCCTA GAACAATGCATTAAGGATTGCAGAGCAAGAGGTAAGCCCTA < 41bp 1 0.187831186838639 1 0.270542800426483 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39776662 chr1:39776643 nonsynonymous SNV 0.965 1 2 hm5C_associated_SNPs_33205 0 0 1 0 1 MACF1 chr1:39776672 5'GT 39776672 Upstream 30bp
chr21 46900040 46900040 1 + C T SKCM 46900048 + 46900028 46900068 41 GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACGACAAGC GCCTCCAGGGCCTCCAGGACCCTCCTTCAGACACGACAAGC < 41bp 1 0.0536660651901608 1 0.0641683340072632 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900048 chr21:46900040 synonymous SNV . 0 13 hm5C_associated_SNPs_33206 0 0 1 0 2 COL18A1 chr21:46899984 3'AG 46899984 Downstream 57bp
chr21 46900040 46900040 1 + C T SKCM 46900048 + 46900028 46900068 41 GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACGACAAGC GCCTCCAGGGCCTCCAGGACCCTCCTTCAGACACGACAAGC < 41bp 1 0.0536660651901608 1 0.0641683340072632 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900048 chr21:46900040 synonymous SNV . 0 13 hm5C_associated_SNPs_33206 0 0 1 0 2 COL18A1 chr21:46900070 5'GT 46900070 Upstream 31bp
chr1 206902126 206902126 1 + C T SKCM 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCCGCACATTGTACGGATCGTGGATGTGTACGAGAATCT < 41bp 1 0.459849010813321 1 0.118656665086746 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902126 synonymous SNV . 0 12 hm5C_associated_SNPs_33207 0 0 1 0 2 MAPKAPK2 chr1:206902055 3'AG 206902055 Downstream 72bp
chr1 206902126 206902126 1 + C T SKCM 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCCGCACATTGTACGGATCGTGGATGTGTACGAGAATCT < 41bp 1 0.459849010813321 1 0.118656665086746 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902126 synonymous SNV . 0 12 hm5C_associated_SNPs_33207 0 0 1 0 2 MAPKAPK2 chr1:206902194 5'GT 206902194 Upstream 69bp
chr3 50255194 50255194 1 + G A SKCM 50255191 + 50255171 50255211 41 AACTTCAGCCACGTGGAGATCGTGAAGGAGAAGGTGCAGCT AACTTCAGCCACGTGGAGATCGTAAAGGAGAAGGTGCAGCT < 41bp 1 0.501784481548702 1 0.32421749830246 experiment 0.996431036902596 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50255191 chr3:50255194 . . 0 24 hm5C_associated_SNPs_33208 0 0 0 0 2 SLC38A3 chr3:50255108 3'AG 50255108 Downstream 87bp
chr3 50255194 50255194 1 + G A SKCM 50255191 + 50255171 50255211 41 AACTTCAGCCACGTGGAGATCGTGAAGGAGAAGGTGCAGCT AACTTCAGCCACGTGGAGATCGTAAAGGAGAAGGTGCAGCT < 41bp 1 0.501784481548702 1 0.32421749830246 experiment 0.996431036902596 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50255191 chr3:50255194 . . 0 24 hm5C_associated_SNPs_33208 0 0 0 0 2 SLC38A3 chr3:50255272 5'GT 50255272 Upstream 79bp
chr3 41278184 41278184 1 + C T SKCM 41278166 + 41278146 41278186 41 TTCAGTTGAGCTGACCAGCTCTCTCTTCAGAACAGAGCCAA TTCAGTTGAGCTGACCAGCTCTCTCTTCAGAACAGAGCTAA < 41bp 1 0.337573446688026 1 0.153887927532196 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41278166 chr3:41278184 nonsynonymous SNV 0.981 2 39 hm5C_associated_SNPs_33209 0 0 1 0 1 CTNNB1 chr3:41278200 5'GT 41278200 Upstream 17bp
chr8 121259933 121259933 1 + C T SKCM 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTACGTGGGACCCCCCATCTTTCCCGGTGAAAGGCTATA < 41bp 1 0.0298400703794893 1 0.0758075714111328 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259933 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_33210 0 0 0 0 2 COL14A1 chr8:121259852 3'AG 121259852 Downstream 82bp
chr8 121259933 121259933 1 + C T SKCM 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTACGTGGGACCCCCCATCTTTCCCGGTGAAAGGCTATA < 41bp 1 0.0298400703794893 1 0.0758075714111328 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259933 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_33210 0 0 0 0 2 COL14A1 chr8:121259974 5'GT 121259974 Upstream 42bp
chr8 121259933 121259933 1 + C T SKCM 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGACCCCCCATCTTTCCCGGTGAAAGGCTATAGAAT < 41bp 1 0.471226172632473 1 0.120960712432861 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259933 nonsynonymous SNV 0.008 0 20 hm5C_associated_SNPs_33211 0 0 0 0 2 COL14A1 chr8:121259852 3'AG 121259852 Downstream 82bp
chr8 121259933 121259933 1 + C T SKCM 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGACCCCCCATCTTTCCCGGTGAAAGGCTATAGAAT < 41bp 1 0.471226172632473 1 0.120960712432861 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259933 nonsynonymous SNV 0.008 0 20 hm5C_associated_SNPs_33211 0 0 0 0 2 COL14A1 chr8:121259974 5'GT 121259974 Upstream 42bp
chr3 41278183 41278183 1 + C T SKCM 41278166 + 41278146 41278186 41 TTCAGTTGAGCTGACCAGCTCTCTCTTCAGAACAGAGCCAA TTCAGTTGAGCTGACCAGCTCTCTCTTCAGAACAGAGTCAA < 41bp 1 0.343425333871698 1 0.210598796606064 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41278166 chr3:41278183 nonsynonymous SNV 0.988 1 38 hm5C_associated_SNPs_33212 0 0 1 0 1 CTNNB1 chr3:41278200 5'GT 41278200 Upstream 18bp
chr13 94680006 94680006 1 + C T SKCM 94679996 + 94679976 94680016 41 TCTGCAGGTCAGCCCAACCCCAGGGTGTATCCGTGCCCTCA TCTGCAGGTCAGCCCAACCCCAGGGTGTATTCGTGCCCTCA < 41bp 1 0.657582295437817 1 0.855783224105835 experiment 0.684835409124366 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPC6 ENSG00000183098 CDS Human protein_coding chr13:94679996 chr13:94680006 synonymous SNV . 0 31 hm5C_associated_SNPs_33213 0 0 0 0 1 GPC6 chr13:94679983 3'AG 94679983 Downstream 24bp
chr6 44197193 44197193 1 + C T SKCM 44197173 + 44197153 44197193 41 TCATGCTGGGTCTGGGAACGCTGCTCCCGTGGAATTTTTTC TCATGCTGGGTCTGGGAACGCTGCTCCCGTGGAATTTTTTT < 41bp 1 0.402759526655685 1 0.119780629873276 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44197173 chr6:44197193 synonymous SNV . 0 41 hm5C_associated_SNPs_33214 0 0 1 0 2 SLC29A1 chr6:44197127 3'AG 44197127 Downstream 67bp
chr6 44197193 44197193 1 + C T SKCM 44197173 + 44197153 44197193 41 TCATGCTGGGTCTGGGAACGCTGCTCCCGTGGAATTTTTTC TCATGCTGGGTCTGGGAACGCTGCTCCCGTGGAATTTTTTT < 41bp 1 0.402759526655685 1 0.119780629873276 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44197173 chr6:44197193 synonymous SNV . 0 41 hm5C_associated_SNPs_33214 0 0 1 0 2 SLC29A1 chr6:44197208 5'GT 44197208 Upstream 16bp
chr3 126751319 126751319 1 + C T SKCM 126751338 + 126751318 126751358 41 TCGGTGGTGGCCCAGACCTTCATGGACTCCTGCTCCACCTC TTGGTGGTGGCCCAGACCTTCATGGACTCCTGCTCCACCTC < 41bp 1 0.331081233960043 1 0.238184988498688 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126751338 chr3:126751319 nonsynonymous SNV 0.966 4 2 hm5C_associated_SNPs_33215 0 0 1 0 1 PLXNA1 chr3:126751230 3'AG 126751230 Downstream 90bp
chr1 162725007 162725007 1 + T C SKCM 162725020 + 162725000 162725040 41 CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA CCCATTGCAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA < 41bp 1 0.423647399953985 1 0.641074955463409 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162725020 chr1:162725007 nonsynonymous SNV 0.937 3 8 hm5C_associated_SNPs_33216 0 0 0 0 2 DDR2 chr1:162724946 3'AG 162724946 Downstream 62bp
chr1 162725007 162725007 1 + T C SKCM 162725020 + 162725000 162725040 41 CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA CCCATTGCAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA < 41bp 1 0.423647399953985 1 0.641074955463409 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162725020 chr1:162725007 nonsynonymous SNV 0.937 3 8 hm5C_associated_SNPs_33216 0 0 0 0 2 DDR2 chr1:162725093 5'GT 162725093 Upstream 87bp
chr6 31914153 31914153 1 + T G SKCM 31914162 + 31914142 31914182 41 CTCTTCAGGTGTGACCACCACTCCATGGTCTTTGGCCCGGC CTCTTCAGGTGGGACCACCACTCCATGGTCTTTGGCCCGGC < 41bp 1 0.763809212812004 1 0.980685472488403 experiment 0.472381574375992 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control CFB ENSG00000243649;ENSG00000244255 CDS Human other chr6:31914162 chr6:31914153 nonsynonymous SNV 0.764 0 12 hm5C_associated_SNPs_33218 0 0 1 0 1 CFB chr6:31914150 3'AG 31914150 Downstream 4bp
chr6 149691193 149691193 1 + C T SKCM 149691182 + 149691162 149691202 41 TTCAGGTTTTACATGACCTGCGACAAAAATTCCCTGAAGTA TTCAGGTTTTACATGACCTGCGACAAAAATTTCCTGAAGTA < 41bp 1 0.541744504754776 1 0.209628015756607 experiment 0.916510990490448 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAB2 ENSG00000055208 CDS Human protein_coding chr6:149691182 chr6:149691193 synonymous SNV . 0 32 hm5C_associated_SNPs_33219 0 0 1 0 1 TAB2 chr6:149691235 5'GT 149691235 Upstream 43bp
chr2 169551552 169551552 1 + C T SKCM 169551536 + 169551516 169551556 41 TTATTGGTCTTTGATGTTTTCTCAGTTCACTGATATCAAAA TTATTGGTCTTTGATGTTTTCTCAGTTCACTGATATTAAAA < 41bp 1 0.454981205647993 1 0.286716520786285 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169551536 chr2:169551552 synonymous SNV . 0 37 hm5C_associated_SNPs_33220 0 0 1 0 2 CERS6 chr2:169551469 3'AG 169551469 Downstream 84bp
chr2 169551552 169551552 1 + C T SKCM 169551536 + 169551516 169551556 41 TTATTGGTCTTTGATGTTTTCTCAGTTCACTGATATCAAAA TTATTGGTCTTTGATGTTTTCTCAGTTCACTGATATTAAAA < 41bp 1 0.454981205647993 1 0.286716520786285 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169551536 chr2:169551552 synonymous SNV . 0 37 hm5C_associated_SNPs_33220 0 0 1 0 2 CERS6 chr2:169551561 5'GT 169551561 Upstream 10bp
chr22 26242217 26242217 1 + G A SKCM 26242222 + 26242202 26242242 41 TGCCGCGGTGAGGAGGAAAGCCCCGTGCTCCCAGATCAAGC TGCCGCGGTGAGGAGAAAAGCCCCGTGCTCCCAGATCAAGC < 41bp 1 0.292834399584128 1 0.168123781681061 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26242222 chr22:26242217 synonymous SNV . 0 16 hm5C_associated_SNPs_33221 0 0 0 0 1 MYO18B chr22:26242250 5'GT 26242250 Upstream 34bp
chr20 61595008 61595008 1 + C T SKCM 61595023 + 61595003 61595043 41 TTCTTCGAGGAGACCTTCCCCGACGCCAAGGTGAGTCGGGG TTCTTTGAGGAGACCTTCCCCGACGCCAAGGTGAGTCGGGG < 41bp 1 0.510681205978817 1 0.491861253976822 experiment 0.978637588042366 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61595023 chr20:61595008 synonymous SNV . 0 6 hm5C_associated_SNPs_33222 0 0 1 0 2 SLC17A9 chr20:61594936 3'AG 61594936 Downstream 73bp
chr20 61595008 61595008 1 + C T SKCM 61595023 + 61595003 61595043 41 TTCTTCGAGGAGACCTTCCCCGACGCCAAGGTGAGTCGGGG TTCTTTGAGGAGACCTTCCCCGACGCCAAGGTGAGTCGGGG < 41bp 1 0.510681205978817 1 0.491861253976822 experiment 0.978637588042366 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61595023 chr20:61595008 synonymous SNV . 0 6 hm5C_associated_SNPs_33222 0 0 1 0 2 SLC17A9 chr20:61595032 5'GT 61595032 Upstream 25bp
chr20 18142489 18142489 1 + C T SKCM 18142508 + 18142488 18142528 41 CCATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCGG CTATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCGG < 41bp 1 0.0964181882357834 1 0.0529814660549164 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KAT14 ENSG00000149474 CDS Human protein_coding chr20:18142508 chr20:18142489 synonymous SNV . 0 2 hm5C_associated_SNPs_33224 0 0 0 0 2 KAT14 chr20:18142464 3'AG 18142464 Downstream 26bp
chr20 18142489 18142489 1 + C T SKCM 18142508 + 18142488 18142528 41 CCATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCGG CTATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCGG < 41bp 1 0.0964181882357834 1 0.0529814660549164 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KAT14 ENSG00000149474 CDS Human protein_coding chr20:18142508 chr20:18142489 synonymous SNV . 0 2 hm5C_associated_SNPs_33224 0 0 0 0 2 KAT14 chr20:18142467 3'AG 18142467 Downstream 23bp
chr12 52635367 52635367 1 + G A SKCM 52635378 + 52635358 52635398 41 GCGCAGTATGAGGAGATGGCCAAATGCAGCCGGGCTGAGGC GCGCAGTATAAGGAGATGGCCAAATGCAGCCGGGCTGAGGC < 41bp 1 0.317522826035546 1 0.352155148983002 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52635378 chr12:52635367 nonsynonymous SNV 0.940 4 10 hm5C_associated_SNPs_33225 0 0 1 0 1 KRT7 chr12:52635420 5'GT 52635420 Upstream 54bp
chr8 25168015 25168015 1 + C T SKCM 25168004 + 25167984 25168024 41 ACACTTGGTTGATAGATCAACAGCAATAGCCCGGAAGATGG ACACTTGGTTGATAGATCAACAGCAATAGCCTGGAAGATGG < 41bp 1 0.60457223341755 1 0.274480700492859 experiment 0.7908555331649 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25168004 chr8:25168015 nonsynonymous SNV 0.998 4 32 hm5C_associated_SNPs_33227 0 0 1 0 1 DOCK5 chr8:25168048 5'GT 25168048 Upstream 34bp
chr15 63128194 63128194 1 + C T SKCM 63128184 + 63128164 63128204 41 GGAGAAGCTCATCTCATCTGCCAAGCAGGTCGCCGCTTCCA GGAGAAGCTCATCTCATCTGCCAAGCAGGTTGCCGCTTCCA < 41bp 1 0.0509740962188827 1 0.223746657371521 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63128184 chr15:63128194 synonymous SNV . 0 31 hm5C_associated_SNPs_33228 0 0 0 0 1 TLN2 chr15:63128272 5'GT 63128272 Upstream 79bp
chr3 41275119 41275119 1 + T G SKCM 41275104 + 41275084 41275124 41 TCACCTGTGCAGCTGGAATTCTTTCTAACCTCACTTGCAAT TCACCTGTGCAGCTGGAATTCTTTCTAACCTCACTGGCAAT < 41bp 1 0.117472513486433 1 0.189842700958252 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41275104 chr3:41275119 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_33229 0 0 1 0 1 CTNNB1 chr3:41275020 3'AG 41275020 Downstream 100bp
chr4 57881716 57881716 1 + G A SKCM 57881714 + 57881694 57881734 41 GAGGGAGATTCGGATCTATACGGATGCAGGCCGTATTTGTA GAGGGAGATTCGGATCTATACGAATGCAGGCCGTATTTGTA < 41bp 1 0.470685661519925 1 0.260179489850998 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57881714 chr4:57881716 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_33230 0 0 1 0 1 POLR2B chr4:57881668 3'AG 57881668 Downstream 49bp
chr22 41735889 41735889 1 + C T SKCM 41735900 + 41735880 41735920 41 CCCGTGTTCCCCGGCGGGACCCCACTGCTACCACCTGTGGT CCCGTGTTCTCCGGCGGGACCCCACTGCTACCACCTGTGGT < 41bp 1 0.0722556240152919 1 0.0698600113391876 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41735900 chr22:41735889 nonsynonymous SNV 0.955 1 10 hm5C_associated_SNPs_33232 0 0 1 0 1 ZC3H7B chr22:41735820 3'AG 41735820 Downstream 70bp
chr22 32217490 32217490 1 + C T SKCM 32217507 + 32217487 32217527 41 GGGCCATCCGGAGAAGCCATCCAGATCCACCACCAGACCCG GGGTCATCCGGAGAAGCCATCCAGATCCACCACCAGACCCG < 41bp 1 0.561464753183426 1 0.220364689826965 experiment 0.877070493633148 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32217507 chr22:32217490 nonsynonymous SNV 0.999 3 4 hm5C_associated_SNPs_33233 0 0 1 0 1 DEPDC5 chr22:32217488 3'AG 32217488 Downstream 3bp
chr19 46003763 46003763 1 + G A SKCM 46003772 + 46003752 46003792 41 ACAGTTTTCAGGACTCTGGCCTCAGAGGACATCCCAGATTT ACAGTTTTCAGAACTCTGGCCTCAGAGGACATCCCAGATTT < 41bp 1 0.445148350373339 1 0.324308097362518 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPM1N ENSG00000213889 CDS Human protein_coding chr19:46003772 chr19:46003763 synonymous SNV . 0 12 hm5C_associated_SNPs_33234 0 0 0 0 2 PPM1N chr19:46003714 3'AG 46003714 Downstream 50bp
chr19 46003763 46003763 1 + G A SKCM 46003772 + 46003752 46003792 41 ACAGTTTTCAGGACTCTGGCCTCAGAGGACATCCCAGATTT ACAGTTTTCAGAACTCTGGCCTCAGAGGACATCCCAGATTT < 41bp 1 0.445148350373339 1 0.324308097362518 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPM1N ENSG00000213889 CDS Human protein_coding chr19:46003772 chr19:46003763 synonymous SNV . 0 12 hm5C_associated_SNPs_33234 0 0 0 0 2 PPM1N chr19:46003819 5'GT 46003819 Upstream 57bp
chr2 85133146 85133146 1 + C T SKCM 85133155 + 85133135 85133175 41 TAAGAAAATGGCAGACAAACCAGACATGGGGGAAATCGCCA TAAGAAAATGGTAGACAAACCAGACATGGGGGAAATCGCCA < 41bp 1 0.407038983999874 1 0.134329617023468 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMSB10 ENSG00000034510 CDS Human protein_coding chr2:85133155 chr2:85133146 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_33239 0 0 1 0 1 TMSB10 chr2:85133127 3'AG 85133127 Downstream 20bp
chr19 30106215 30106215 1 + G T SKCM 30106212 + 30106192 30106232 41 GGCTTTATTTCCTACATTTACGGGAGCAAATTCCAGCTTCG GGCTTTATTTCCTACATTTACGGTAGCAAATTCCAGCTTCG < 41bp 1 0.737209136319184 1 0.445613861083984 experiment 0.525581727361632 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control POP4 ENSG00000105171 CDS Human protein_coding chr19:30106212 chr19:30106215 synonymous SNV . 0 24 hm5C_associated_SNPs_33240 0 0 1 0 1 POP4 chr19:30106151 3'AG 30106151 Downstream 65bp
chr1 153617557 153617557 1 + C T SKCM 153617537 + 153617517 153617557 41 TTTTTTTTTCCCCTTTGGGCCAGGTCGGGGTATGATAGGTC TTTTTTTTTCCCCTTTGGGCCAGGTCGGGGTATGATAGGTT < 41bp 1 0.142685093013872 1 0.341169834136963 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CHTOP ENSG00000160679 CDS Human protein_coding chr1:153617537 chr1:153617557 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_33241 0 0 1 0 1 CHTOP chr1:153617540 3'AG 153617540 Downstream 18bp
chrX 47102868 47102868 1 + G T SKCM 47102871 + 47102851 47102891 41 TTCCTGTCTACCTGCGGGAGCGCACCCCTGCCCGTGACTAC TTCCTGTCTACCTGCGGTAGCGCACCCCTGCCCGTGACTAC < 41bp 1 0.203257698330073 1 0.153014361858368 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47102871 chrX:47102868 stopgain 1.000 0 18 hm5C_associated_SNPs_33242 0 0 1 0 1 USP11 chrX:47102795 3'AG 47102795 Downstream 74bp
chr4 77631396 77631396 1 + G A SKCM 77631393 + 77631373 77631413 41 CTCACCTCTGGCCCCCAGCACAGGAAAGCAGCGTGGTCAGG CTCACCTCTGGCCCCCAGCACAGAAAAGCAGCGTGGTCAGG < 41bp 1 0.360124005076787 1 0.134538531303406 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77631393 chr4:77631396 synonymous SNV . 0 24 hm5C_associated_SNPs_33243 0 0 0 0 2 SHROOM3 chr4:77631309 3'AG 77631309 Downstream 88bp
chr4 77631396 77631396 1 + G A SKCM 77631393 + 77631373 77631413 41 CTCACCTCTGGCCCCCAGCACAGGAAAGCAGCGTGGTCAGG CTCACCTCTGGCCCCCAGCACAGAAAAGCAGCGTGGTCAGG < 41bp 1 0.360124005076787 1 0.134538531303406 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77631393 chr4:77631396 synonymous SNV . 0 24 hm5C_associated_SNPs_33243 0 0 0 0 2 SHROOM3 chr4:77631440 5'GT 77631440 Upstream 45bp
chr7 142458528 142458528 1 + G A SKCM 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGTGGTGGCTCCCTCATCAACAAACAGTG < 41bp 1 0.245224638519055 1 0.113527983427048 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458528 nonsynonymous SNV 0.002 1 34 hm5C_associated_SNPs_33244 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 49bp
chr7 142458528 142458528 1 + G A SKCM 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGTGGTGGCTCCCTCATCAACAAACAGTG < 41bp 1 0.245224638519055 1 0.113527983427048 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458528 nonsynonymous SNV 0.002 1 34 hm5C_associated_SNPs_33244 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 38bp
chr7 142458528 142458528 1 + G A SKCM 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGGTGGCTCCCTCATCAACAAACAGTGGG < 41bp 1 0.0811865231442837 1 0.0607477724552155 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458528 nonsynonymous SNV 0.002 1 32 hm5C_associated_SNPs_33245 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 49bp
chr7 142458528 142458528 1 + G A SKCM 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGGTGGCTCCCTCATCAACAAACAGTGGG < 41bp 1 0.0811865231442837 1 0.0607477724552155 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458528 nonsynonymous SNV 0.002 1 32 hm5C_associated_SNPs_33245 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 38bp
chr7 142458528 142458528 1 + G A SKCM 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGGTGGCTCCCTCATCAACAAACAGTGGGT < 41bp 1 0.166289025594243 1 0.0643559396266937 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458528 nonsynonymous SNV 0.002 1 31 hm5C_associated_SNPs_33246 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 49bp
chr7 142458528 142458528 1 + G A SKCM 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGGTGGCTCCCTCATCAACAAACAGTGGGT < 41bp 1 0.166289025594243 1 0.0643559396266937 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458528 nonsynonymous SNV 0.002 1 31 hm5C_associated_SNPs_33246 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 38bp
chr7 142458528 142458528 1 + G A SKCM 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGGTGGCTCCCTCATCAACAAACAGTGGGTG < 41bp 1 0.376981840668052 1 0.115612298250198 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458528 nonsynonymous SNV 0.002 1 30 hm5C_associated_SNPs_33247 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 49bp
chr7 142458528 142458528 1 + G A SKCM 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGGTGGCTCCCTCATCAACAAACAGTGGGTG < 41bp 1 0.376981840668052 1 0.115612298250198 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458528 nonsynonymous SNV 0.002 1 30 hm5C_associated_SNPs_33247 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 38bp
chr7 142458528 142458528 1 + G A SKCM 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGGTGGCTCCCTCATCAACAAACAGTGGGTGGT < 41bp 1 0.451063526451184 1 0.686791062355042 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458528 nonsynonymous SNV 0.002 1 28 hm5C_associated_SNPs_33248 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 49bp
chr7 142458528 142458528 1 + G A SKCM 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGGTGGCTCCCTCATCAACAAACAGTGGGTGGT < 41bp 1 0.451063526451184 1 0.686791062355042 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458528 nonsynonymous SNV 0.002 1 28 hm5C_associated_SNPs_33248 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 38bp
chr7 142458528 142458528 1 + G A SKCM 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGGTGGCTCCCTCATCAACAAACAGTGGGTGGTATC < 41bp 1 0.798275455375423 1 0.389986366033554 experiment 0.403449089249153 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458528 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_33249 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 49bp
chr7 142458528 142458528 1 + G A SKCM 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGGTGGCTCCCTCATCAACAAACAGTGGGTGGTATC < 41bp 1 0.798275455375423 1 0.389986366033554 experiment 0.403449089249153 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458528 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_33249 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 38bp
chr7 142458528 142458528 1 + G A SKCM 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGCTCCCTCATCAACAAACAGTGGGTGGTATCAGC < 41bp 1 0.360049990197445 1 0.326247572898865 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458528 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_33250 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 49bp
chr7 142458528 142458528 1 + G A SKCM 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGCTCCCTCATCAACAAACAGTGGGTGGTATCAGC < 41bp 1 0.360049990197445 1 0.326247572898865 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458528 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_33250 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 38bp
chr7 142458528 142458528 1 + G A SKCM 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGCTCCCTCATCAACAAACAGTGGGTGGTATCAGCAGGC < 41bp 1 0.58533108667013 1 0.534774839878082 experiment 0.82933782665974 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458528 nonsynonymous SNV 0.002 1 18 hm5C_associated_SNPs_33251 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 49bp
chr7 142458528 142458528 1 + G A SKCM 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGCTCCCTCATCAACAAACAGTGGGTGGTATCAGCAGGC < 41bp 1 0.58533108667013 1 0.534774839878082 experiment 0.82933782665974 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458528 nonsynonymous SNV 0.002 1 18 hm5C_associated_SNPs_33251 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 38bp
chr7 142458528 142458528 1 + G A SKCM 142458547 + 142458527 142458567 41 CGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT CAAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT < 41bp 1 0.531891680993677 1 0.877896964550018 experiment 0.936216638012645 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458547 chr7:142458528 nonsynonymous SNV 0.002 1 2 hm5C_associated_SNPs_33252 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 49bp
chr7 142458528 142458528 1 + G A SKCM 142458547 + 142458527 142458567 41 CGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT CAAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT < 41bp 1 0.531891680993677 1 0.877896964550018 experiment 0.936216638012645 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458547 chr7:142458528 nonsynonymous SNV 0.002 1 2 hm5C_associated_SNPs_33252 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 38bp
chr19 50189399 50189399 1 + C G SKCM 50189383 + 50189363 50189403 41 ATACCGTCAAGGTGGAAGACCTGACCTTCACCTCCCCGTTC ATACCGTCAAGGTGGAAGACCTGACCTTCACCTCCCGGTTC < 41bp 1 0.40048150670927 1 0.0484292805194855 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50189383 chr19:50189399 nonsynonymous SNV 0.971 2 37 hm5C_associated_SNPs_33253 0 0 1 0 1 PRMT1 chr19:50189350 3'AG 50189350 Downstream 50bp
chrX 128691357 128691357 1 + C T SKCM 128691345 + 128691325 128691365 41 GGGGACTGGATCAGAGAGCGCCGCTTTGAAATCCCTGATGA GGGGACTGGATCAGAGAGCGCCGCTTTGAAATTCCTGATGA < 41bp 1 0.36014722804044 1 0.0596442222595215 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128691345 chrX:128691357 synonymous SNV . 0 33 hm5C_associated_SNPs_33254 0 0 1 0 2 OCRL chrX:128691302 3'AG 128691302 Downstream 56bp
chrX 128691357 128691357 1 + C T SKCM 128691345 + 128691325 128691365 41 GGGGACTGGATCAGAGAGCGCCGCTTTGAAATCCCTGATGA GGGGACTGGATCAGAGAGCGCCGCTTTGAAATTCCTGATGA < 41bp 1 0.36014722804044 1 0.0596442222595215 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128691345 chrX:128691357 synonymous SNV . 0 33 hm5C_associated_SNPs_33254 0 0 1 0 2 OCRL chrX:128691412 5'GT 128691412 Upstream 56bp
chr5 74638497 74638497 1 + G T SKCM 74638509 + 74638489 74638529 41 TCATAGTGGGGACAGTGACACTGACCATCTGCATGATGTCC TCATAGTGTGGACAGTGACACTGACCATCTGCATGATGTCC < 41bp 1 0.300331731032033 1 0.0707316994667053 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMGCR ENSG00000113161 CDS Human protein_coding chr5:74638509 chr5:74638497 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_33258 0 0 1 0 2 HMGCR chr5:74638408 3'AG 74638408 Downstream 90bp
chr5 74638497 74638497 1 + G T SKCM 74638509 + 74638489 74638529 41 TCATAGTGGGGACAGTGACACTGACCATCTGCATGATGTCC TCATAGTGTGGACAGTGACACTGACCATCTGCATGATGTCC < 41bp 1 0.300331731032033 1 0.0707316994667053 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMGCR ENSG00000113161 CDS Human protein_coding chr5:74638509 chr5:74638497 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_33258 0 0 1 0 2 HMGCR chr5:74638595 5'GT 74638595 Upstream 99bp
chr2 97007508 97007508 1 + C T SKCM 97007527 + 97007507 97007547 41 CCCAGTCCTCGAAGACTTTCCTCAGAATGACGATGAGAAGG CTCAGTCCTCGAAGACTTTCCTCAGAATGACGATGAGAAGG < 41bp 1 0.569946080180448 1 0.321202039718628 experiment 0.860107839639105 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCAPH ENSG00000121152 CDS Human protein_coding chr2:97007527 chr2:97007508 nonsynonymous SNV 0.966 1 2 hm5C_associated_SNPs_33260 0 0 1 0 2 NCAPH chr2:97007413 3'AG 97007413 Downstream 96bp
chr2 97007508 97007508 1 + C T SKCM 97007527 + 97007507 97007547 41 CCCAGTCCTCGAAGACTTTCCTCAGAATGACGATGAGAAGG CTCAGTCCTCGAAGACTTTCCTCAGAATGACGATGAGAAGG < 41bp 1 0.569946080180448 1 0.321202039718628 experiment 0.860107839639105 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCAPH ENSG00000121152 CDS Human protein_coding chr2:97007527 chr2:97007508 nonsynonymous SNV 0.966 1 2 hm5C_associated_SNPs_33260 0 0 1 0 2 NCAPH chr2:97007452 3'AG 97007452 Downstream 57bp
chr1 200869294 200869294 1 + T A SKCM 200869306 + 200869286 200869326 41 CCCAAGGTTCGCCGCAGGATCGGAGCGGCTTACAAACTGGA CCCAAGGTACGCCGCAGGATCGGAGCGGCTTACAAACTGGA < 41bp 1 0.603021042329858 1 0.432577192783356 experiment 0.793957915340285 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200869306 chr1:200869294 synonymous SNV . 0 9 hm5C_associated_SNPs_33261 0 0 1 0 2 C1orf106 chr1:200869232 3'AG 200869232 Downstream 63bp
chr1 200869294 200869294 1 + T A SKCM 200869306 + 200869286 200869326 41 CCCAAGGTTCGCCGCAGGATCGGAGCGGCTTACAAACTGGA CCCAAGGTACGCCGCAGGATCGGAGCGGCTTACAAACTGGA < 41bp 1 0.603021042329858 1 0.432577192783356 experiment 0.793957915340285 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200869306 chr1:200869294 synonymous SNV . 0 9 hm5C_associated_SNPs_33261 0 0 1 0 2 C1orf106 chr1:200869348 5'GT 200869348 Upstream 55bp
chr6 31918680 31918680 1 + G A SKCM 31918695 + 31918675 31918715 41 AACTCGAGCTTTGAGGCTTCCTCCAACTACCACTTGCCAGC AACTCAAGCTTTGAGGCTTCCTCCAACTACCACTTGCCAGC < 41bp 1 0.723429506886298 1 0.850847363471985 experiment 0.553140986227404 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control CFB ENSG00000243649;ENSG00000244255 CDS Human other chr6:31918695 chr6:31918680 nonsynonymous SNV 0.997 1 6 hm5C_associated_SNPs_33262 0 0 1 0 2 CFB chr6:31918645 3'AG 31918645 Downstream 36bp
chr6 31918680 31918680 1 + G A SKCM 31918695 + 31918675 31918715 41 AACTCGAGCTTTGAGGCTTCCTCCAACTACCACTTGCCAGC AACTCAAGCTTTGAGGCTTCCTCCAACTACCACTTGCCAGC < 41bp 1 0.723429506886298 1 0.850847363471985 experiment 0.553140986227404 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control CFB ENSG00000243649;ENSG00000244255 CDS Human other chr6:31918695 chr6:31918680 nonsynonymous SNV 0.997 1 6 hm5C_associated_SNPs_33262 0 0 1 0 2 CFB chr6:31918721 5'GT 31918721 Upstream 42bp
chr9 18504864 18504864 1 + G A SKCM 18504862 + 18504842 18504882 41 CGCTCCGAGGAGGACCGGGACGGCCTATGGGATGCCTGGGG CGCTCCGAGGAGGACCGGGACGACCTATGGGATGCCTGGGG < 41bp 1 0.216168236582405 1 0.322930186986923 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18504862 chr9:18504864 nonsynonymous SNV 0.976 0 23 hm5C_associated_SNPs_33263 0 0 0 0 1 ADAMTSL1 chr9:18504954 5'GT 18504954 Upstream 91bp
chr15 52188700 52188700 1 + C T SKCM 52188695 + 52188675 52188715 41 GAAATGTTTCAGTCTTGCAGCCACCCGGAGCAATGACCCTG GAAATGTTTCAGTCTTGCAGCCACCTGGAGCAATGACCCTG < 41bp 1 0.127895942759366 1 0.0625995099544525 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMOD3 ENSG00000138594 CDS Human protein_coding chr15:52188695 chr15:52188700 nonsynonymous SNV 0.995 5 26 hm5C_associated_SNPs_33264 0 0 1 0 2 TMOD3 chr15:52188616 3'AG 52188616 Downstream 85bp
chr15 52188700 52188700 1 + C T SKCM 52188695 + 52188675 52188715 41 GAAATGTTTCAGTCTTGCAGCCACCCGGAGCAATGACCCTG GAAATGTTTCAGTCTTGCAGCCACCTGGAGCAATGACCCTG < 41bp 1 0.127895942759366 1 0.0625995099544525 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMOD3 ENSG00000138594 CDS Human protein_coding chr15:52188695 chr15:52188700 nonsynonymous SNV 0.995 5 26 hm5C_associated_SNPs_33264 0 0 1 0 2 TMOD3 chr15:52188723 5'GT 52188723 Upstream 24bp
chr7 142458565 142458565 1 + C T SKCM 142458547 + 142458527 142458567 41 CGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT CGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTTGT < 41bp 1 0.538304367621549 1 0.862168610095978 experiment 0.923391264756901 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458547 chr7:142458565 nonsynonymous SNV 0.553 2 39 hm5C_associated_SNPs_33272 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 86bp
chr7 142458565 142458565 1 + C T SKCM 142458547 + 142458527 142458567 41 CGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT CGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTTGT < 41bp 1 0.538304367621549 1 0.862168610095978 experiment 0.923391264756901 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458547 chr7:142458565 nonsynonymous SNV 0.553 2 39 hm5C_associated_SNPs_33272 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 1bp
chr7 142458565 142458565 1 + C T SKCM 142458551 + 142458531 142458571 41 CAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGT CAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTTGTAAGT < 41bp 1 0.192948940852907 1 0.385544717311859 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458551 chr7:142458565 nonsynonymous SNV 0.553 2 35 hm5C_associated_SNPs_33273 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 86bp
chr7 142458565 142458565 1 + C T SKCM 142458551 + 142458531 142458571 41 CAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGT CAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTTGTAAGT < 41bp 1 0.192948940852907 1 0.385544717311859 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458551 chr7:142458565 nonsynonymous SNV 0.553 2 35 hm5C_associated_SNPs_33273 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 1bp
chr7 142458565 142458565 1 + C T SKCM 142458552 + 142458532 142458572 41 AGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTG AGTGGGTGGTATCAGCAGGCCACTGCTACAAGTTGTAAGTG < 41bp 1 0.440596684622257 1 0.157918125391006 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458552 chr7:142458565 nonsynonymous SNV 0.553 2 34 hm5C_associated_SNPs_33274 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 86bp
chr7 142458565 142458565 1 + C T SKCM 142458552 + 142458532 142458572 41 AGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTG AGTGGGTGGTATCAGCAGGCCACTGCTACAAGTTGTAAGTG < 41bp 1 0.440596684622257 1 0.157918125391006 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458552 chr7:142458565 nonsynonymous SNV 0.553 2 34 hm5C_associated_SNPs_33274 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 1bp
chr7 142458565 142458565 1 + C T SKCM 142458554 + 142458534 142458574 41 TGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTG TGGGTGGTATCAGCAGGCCACTGCTACAAGTTGTAAGTGTG < 41bp 1 0.310061834179177 1 0.114913284778595 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458554 chr7:142458565 nonsynonymous SNV 0.553 2 32 hm5C_associated_SNPs_33275 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 86bp
chr7 142458565 142458565 1 + C T SKCM 142458554 + 142458534 142458574 41 TGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTG TGGGTGGTATCAGCAGGCCACTGCTACAAGTTGTAAGTGTG < 41bp 1 0.310061834179177 1 0.114913284778595 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458554 chr7:142458565 nonsynonymous SNV 0.553 2 32 hm5C_associated_SNPs_33275 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 1bp
chr7 142458565 142458565 1 + C T SKCM 142458557 + 142458537 142458577 41 GTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTGGGG GTGGTATCAGCAGGCCACTGCTACAAGTTGTAAGTGTGGGG < 41bp 1 0.527503421683749 1 0.763113379478455 experiment 0.944993156632502 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458557 chr7:142458565 nonsynonymous SNV 0.553 2 29 hm5C_associated_SNPs_33276 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 86bp
chr7 142458565 142458565 1 + C T SKCM 142458557 + 142458537 142458577 41 GTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTGGGG GTGGTATCAGCAGGCCACTGCTACAAGTTGTAAGTGTGGGG < 41bp 1 0.527503421683749 1 0.763113379478455 experiment 0.944993156632502 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458557 chr7:142458565 nonsynonymous SNV 0.553 2 29 hm5C_associated_SNPs_33276 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 1bp
chr7 142458565 142458565 1 + C T SKCM 142458560 + 142458540 142458580 41 GTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTGGGGCCC GTATCAGCAGGCCACTGCTACAAGTTGTAAGTGTGGGGCCC < 41bp 1 0.628055860167814 1 0.542049527168274 experiment 0.743888279664372 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458560 chr7:142458565 nonsynonymous SNV 0.553 2 26 hm5C_associated_SNPs_33277 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 86bp
chr7 142458565 142458565 1 + C T SKCM 142458560 + 142458540 142458580 41 GTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTGGGGCCC GTATCAGCAGGCCACTGCTACAAGTTGTAAGTGTGGGGCCC < 41bp 1 0.628055860167814 1 0.542049527168274 experiment 0.743888279664372 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458560 chr7:142458565 nonsynonymous SNV 0.553 2 26 hm5C_associated_SNPs_33277 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 1bp
chr19 3739121 3739121 1 + C T SKCM 3739101 + 3739081 3739121 41 TGGGTCGTGACCTGCGGGAGCAAGAGCGGGGCATCATTCCC TGGGTCGTGACCTGCGGGAGCAAGAGCGGGGCATCATTCCT < 41bp 1 0.696628644639008 1 0.704635679721832 experiment 0.606742710721984 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TJP3 ENSG00000105289 CDS Human protein_coding chr19:3739101 chr19:3739121 synonymous SNV . 0 41 hm5C_associated_SNPs_33278 0 0 0 0 1 TJP3 chr19:3739132 5'GT 3739132 Upstream 12bp
chr2 74077595 74077595 1 + C T SKCM 74077580 + 74077560 74077600 41 GATTACTGCAACACAGAGAACGAAGAAGAACTTTTCCTCAT GATTACTGCAACACAGAGAACGAAGAAGAACTTTTTCTCAT < 41bp 1 0.57106174146094 1 0.428724765777588 experiment 0.85787651707812 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STAMBP ENSG00000124356 CDS Human protein_coding chr2:74077580 chr2:74077595 synonymous SNV . 0 36 hm5C_associated_SNPs_33281 0 0 1 0 2 STAMBP chr2:74077503 3'AG 74077503 Downstream 93bp
chr2 74077595 74077595 1 + C T SKCM 74077580 + 74077560 74077600 41 GATTACTGCAACACAGAGAACGAAGAAGAACTTTTCCTCAT GATTACTGCAACACAGAGAACGAAGAAGAACTTTTTCTCAT < 41bp 1 0.57106174146094 1 0.428724765777588 experiment 0.85787651707812 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STAMBP ENSG00000124356 CDS Human protein_coding chr2:74077580 chr2:74077595 synonymous SNV . 0 36 hm5C_associated_SNPs_33281 0 0 1 0 2 STAMBP chr2:74077640 5'GT 74077640 Upstream 46bp
chr2 233272986 233272986 1 + G A SKCM 233272995 + 233272975 233273015 41 AGGTGATCCTAGGTGGAGGCCGAAAGTACATGTTTCCCATG AGGTGATCCTAAGTGGAGGCCGAAAGTACATGTTTCCCATG < 41bp 1 0.586240653552681 1 0.415585070848465 experiment 0.827518692894639 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233272995 chr2:233272986 nonsynonymous SNV 0.139 5 12 hm5C_associated_SNPs_33292 0 0 0 0 1 ALPPL2 chr2:233272977 3'AG 233272977 Downstream 10bp
chr7 99798497 99798497 1 + G A SKCM 99798514 + 99798494 99798534 41 CCCGAATTCACTTTCTTCAGCCGGGCGGACTTTGCCCGCAG CCCAAATTCACTTTCTTCAGCCGGGCGGACTTTGCCCGCAG < 41bp 1 0.592761282589736 1 0.695894837379456 experiment 0.814477434820528 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control STAG3 ENSG00000066923 CDS Human protein_coding chr7:99798514 chr7:99798497 nonsynonymous SNV 0.992 0 4 hm5C_associated_SNPs_33293 0 0 0 0 1 STAG3 chr7:99798592 5'GT 99798592 Upstream 96bp
chr21 48068504 48068504 1 + C T SKCM 48068501 + 48068481 48068521 41 GGGACTGGGATCATCAGTCTCTTCTGTGCACACTATGCGCG GGGACTGGGATCATCAGTCTCTTTTGTGCACACTATGCGCG < 41bp 1 0.275606227655498 1 0.125889837741852 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48068501 chr21:48068504 synonymous SNV 0.885 0 24 hm5C_associated_SNPs_33294 0 0 1 0 1 PRMT2 chr21:48068531 5'GT 48068531 Upstream 28bp
chr14 105936237 105936237 1 + C T SKCM 105936253 + 105936233 105936273 41 TGATCCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGCGGCGG TGATTCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGCGGCGG < 41bp 1 0.226916428995592 1 0.0803355574607849 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936253 chr14:105936237 synonymous SNV . 0 5 hm5C_associated_SNPs_33298 0 0 1 0 2 MTA1 chr14:105936178 3'AG 105936178 Downstream 60bp
chr14 105936237 105936237 1 + C T SKCM 105936253 + 105936233 105936273 41 TGATCCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGCGGCGG TGATTCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGCGGCGG < 41bp 1 0.226916428995592 1 0.0803355574607849 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936253 chr14:105936237 synonymous SNV . 0 5 hm5C_associated_SNPs_33298 0 0 1 0 2 MTA1 chr14:105936329 5'GT 105936329 Upstream 93bp
chr14 105936237 105936237 1 + C T SKCM 105936255 + 105936235 105936275 41 ATCCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGCGGCGGAT ATTCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGCGGCGGAT < 41bp 1 0.573007436828342 1 0.154611527919769 experiment 0.853985126343316 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936255 chr14:105936237 synonymous SNV . 0 3 hm5C_associated_SNPs_33299 0 0 1 0 2 MTA1 chr14:105936178 3'AG 105936178 Downstream 60bp
chr14 105936237 105936237 1 + C T SKCM 105936255 + 105936235 105936275 41 ATCCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGCGGCGGAT ATTCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGCGGCGGAT < 41bp 1 0.573007436828342 1 0.154611527919769 experiment 0.853985126343316 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936255 chr14:105936237 synonymous SNV . 0 3 hm5C_associated_SNPs_33299 0 0 1 0 2 MTA1 chr14:105936329 5'GT 105936329 Upstream 93bp
chr3 31674562 31674562 1 + C T SKCM 31674578 + 31674558 31674598 41 AGCACCTGATAACAGGGAGACATTAGATCACAAACCTCGAG AGCATCTGATAACAGGGAGACATTAGATCACAAACCTCGAG < 41bp 1 0.213969462967728 1 0.254114985466003 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STT3B ENSG00000163527 CDS Human protein_coding chr3:31674578 chr3:31674562 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_33301 0 0 1 0 1 STT3B chr3:31674639 5'GT 31674639 Upstream 78bp
chr2 242683189 242683189 1 + C T SKCM 242683180 + 242683160 242683200 41 CAACCAACGCTGGAGGCCTGCGGTTTCTTCGATATGGCTCA CAACCAACGCTGGAGGCCTGCGGTTTCTTTGATATGGCTCA < 41bp 1 0.30321059354174 1 0.34381115436554 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242683180 chr2:242683189 stopgain 0.081 1 30 hm5C_associated_SNPs_33302 0 0 1 0 1 D2HGDH chr2:242683230 5'GT 242683230 Upstream 42bp
chr2 201499624 201499624 1 + C T SKCM 201499618 + 201499598 201499638 41 TGGATGTCTACGTGTCCACACAGTTTCCCAAATATATACAG TGGATGTCTACGTGTCCACACAGTTTTCCAAATATATACAG < 41bp 1 0.272656054057044 1 0.063347339630127 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AOX1 ENSG00000138356 CDS Human protein_coding chr2:201499618 chr2:201499624 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_33303 0 0 0 0 1 AOX1 chr2:201499638 5'GT 201499638 Upstream 15bp
chr15 81199005 81199005 1 + G A SKCM 81199009 + 81198989 81199029 41 CCCTTTCTGCCCTAGGGAAACCAATGTACCTGCACATCGGG CCCTTTCTGCCCTAGGAAAACCAATGTACCTGCACATCGGG < 41bp 1 0.119144490480088 1 0.115868598222733 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81199009 chr15:81199005 synonymous SNV . 0 17 hm5C_associated_SNPs_33307 0 0 1 0 1 CEMIP chr15:81199004 3'AG 81199004 Downstream 2bp
chr11 61490981 61490981 1 + G A SKCM 61490991 + 61490971 61491011 41 CCCACGGGCCGCACCTTTGTCAAGCTGAGAGCCACCAAGAG CCCACGGGCCACACCTTTGTCAAGCTGAGAGCCACCAAGAG < 41bp 1 0.404919183172196 1 0.826247096061707 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DAGLA ENSG00000134780 CDS Human protein_coding chr11:61490991 chr11:61490981 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_33308 0 0 0 0 2 DAGLA chr11:61490906 3'AG 61490906 Downstream 76bp
chr11 61490981 61490981 1 + G A SKCM 61490991 + 61490971 61491011 41 CCCACGGGCCGCACCTTTGTCAAGCTGAGAGCCACCAAGAG CCCACGGGCCACACCTTTGTCAAGCTGAGAGCCACCAAGAG < 41bp 1 0.404919183172196 1 0.826247096061707 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DAGLA ENSG00000134780 CDS Human protein_coding chr11:61490991 chr11:61490981 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_33308 0 0 0 0 2 DAGLA chr11:61491044 5'GT 61491044 Upstream 64bp
chr7 73944162 73944162 1 + C T SKCM 73944163 + 73944143 73944183 41 GGGCATCCCGGACAAGATCCCCTTCAAGCGCCCCTGCACTT GGGCATCCCGGACAAGATCTCCTTCAAGCGCCCCTGCACTT < 41bp 1 0.0319898347301342 1 0.500946223735809 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73944163 chr7:73944162 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_33311 0 0 1 0 2 GTF2IRD1 chr7:73944064 3'AG 73944064 Downstream 99bp
chr7 73944162 73944162 1 + C T SKCM 73944163 + 73944143 73944183 41 GGGCATCCCGGACAAGATCCCCTTCAAGCGCCCCTGCACTT GGGCATCCCGGACAAGATCTCCTTCAAGCGCCCCTGCACTT < 41bp 1 0.0319898347301342 1 0.500946223735809 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73944163 chr7:73944162 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_33311 0 0 1 0 2 GTF2IRD1 chr7:73944247 5'GT 73944247 Upstream 86bp
chr21 38558073 38558073 1 + C T SKCM 38558059 + 38558039 38558079 41 AACATGAATTACATCTGGATCAGTCCCTTGAAATCAGGCAA AACATGAATTACATCTGGATCAGTCCCTTGAAATTAGGCAA < 41bp 1 0.0520533093996036 1 0.130006909370422 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC3 ENSG00000182670 CDS Human protein_coding chr21:38558059 chr21:38558073 synonymous SNV . 0 35 hm5C_associated_SNPs_33312 0 0 1 0 1 TTC3 chr21:38558007 3'AG 38558007 Downstream 67bp
chr9 124062268 124062268 1 + G A SKCM 124062255 + 124062235 124062275 41 GGGGGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCG GGGGGCGTCCCAGGCGGGGGCGCCCCAGGGGCGAGTGCCCG < 41bp 1 0.447971680653437 1 0.597301244735718 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062255 chr9:124062268 synonymous SNV . 0 34 hm5C_associated_SNPs_33313 0 0 1 0 1 GSN chr9:124062283 5'GT 124062283 Upstream 16bp
chr9 124062268 124062268 1 + G A SKCM 124062257 + 124062237 124062277 41 GGGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCGAG GGGCGTCCCAGGCGGGGGCGCCCCAGGGGCGAGTGCCCGAG < 41bp 1 0.67634583294581 1 0.560533761978149 experiment 0.64730833410838 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062257 chr9:124062268 synonymous SNV . 0 32 hm5C_associated_SNPs_33314 0 0 1 0 1 GSN chr9:124062283 5'GT 124062283 Upstream 16bp
chr9 124062268 124062268 1 + G A SKCM 124062258 + 124062238 124062278 41 GGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCGAGG GGCGTCCCAGGCGGGGGCGCCCCAGGGGCGAGTGCCCGAGG < 41bp 1 0.532389600312536 1 0.828202843666077 experiment 0.935220799374927 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062258 chr9:124062268 synonymous SNV . 0 31 hm5C_associated_SNPs_33315 0 0 1 0 1 GSN chr9:124062283 5'GT 124062283 Upstream 16bp
chr17 72306183 72306183 1 + C T SKCM 72306164 + 72306144 72306184 41 CCCCTTCAATAGGTGTGTGACGAGGCCCTCTTCTGCCTCCG CCCCTTCAATAGGTGTGTGACGAGGCCCTCTTCTGCCTCTG < 41bp 1 0.781505961487513 1 0.874987125396729 experiment 0.436988077024975 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72306164 chr17:72306183 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_33317 0 0 0 0 1 DNAI2 chr17:72306156 3'AG 72306156 Downstream 28bp
chr21 42769547 42769547 1 + C T SKCM 42769560 + 42769540 42769580 41 AGTTCTCCTGGAGGAGGGGTCAGCCACGGTTCCCCGACTGG AGTTCTCTTGGAGGAGGGGTCAGCCACGGTTCCCCGACTGG < 41bp 1 0.311030957638168 1 0.599059820175171 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MX2 ENSG00000183486 CDS Human protein_coding chr21:42769560 chr21:42769547 synonymous SNV . 0 8 hm5C_associated_SNPs_33318 0 0 0 2 1 MX2 chr21:42769618 5'GT 42769618 Upstream 72bp
chr1 109342872 109342872 1 + G A SKCM 109342888 + 109342868 109342908 41 AAAAGAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGA AAAAAAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGA < 41bp 1 0.465367885674516 1 0.0224480628967285 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109342888 chr1:109342872 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_33319 0 0 0 0 2 STXBP3 chr1:109342842 3'AG 109342842 Downstream 31bp
chr1 109342872 109342872 1 + G A SKCM 109342888 + 109342868 109342908 41 AAAAGAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGA AAAAAAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGA < 41bp 1 0.465367885674516 1 0.0224480628967285 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109342888 chr1:109342872 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_33319 0 0 0 0 2 STXBP3 chr1:109342927 5'GT 109342927 Upstream 56bp
chr1 109342872 109342872 1 + G A SKCM 109342889 + 109342869 109342909 41 AAAGAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGAA AAAAAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGAA < 41bp 1 0.37578594231928 1 0.0412998497486115 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109342889 chr1:109342872 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_33320 0 0 0 0 2 STXBP3 chr1:109342842 3'AG 109342842 Downstream 31bp
chr1 109342872 109342872 1 + G A SKCM 109342889 + 109342869 109342909 41 AAAGAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGAA AAAAAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGAA < 41bp 1 0.37578594231928 1 0.0412998497486115 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109342889 chr1:109342872 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_33320 0 0 0 0 2 STXBP3 chr1:109342927 5'GT 109342927 Upstream 56bp
chr10 81109500 81109500 1 + C T SKCM 81109491 + 81109471 81109511 41 TCCACCTTCCACAGGGTGATCCCTTCCTTCATGTGCCAGGT TCCACCTTCCACAGGGTGATCCCTTCCTTTATGTGCCAGGT < 41bp 1 0.0744746422921442 1 0.177996039390564 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PPIF ENSG00000108179 CDS Human protein_coding chr10:81109491 chr10:81109500 synonymous SNV . 0 30 hm5C_associated_SNPs_33321 0 0 1 0 2 PPIF chr10:81109421 3'AG 81109421 Downstream 80bp
chr10 81109500 81109500 1 + C T SKCM 81109491 + 81109471 81109511 41 TCCACCTTCCACAGGGTGATCCCTTCCTTCATGTGCCAGGT TCCACCTTCCACAGGGTGATCCCTTCCTTTATGTGCCAGGT < 41bp 1 0.0744746422921442 1 0.177996039390564 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PPIF ENSG00000108179 CDS Human protein_coding chr10:81109491 chr10:81109500 synonymous SNV . 0 30 hm5C_associated_SNPs_33321 0 0 1 0 2 PPIF chr10:81109509 5'GT 81109509 Upstream 10bp
chr11 118267090 118267090 1 + G A SKCM 118267077 + 118267057 118267097 41 CCCCTCACCATGGACCAGATCCGGCCAAACACAGAACTAAA CCCCTCACCATGGACCAGATCCGGCCAAACACAAAACTAAA < 41bp 1 0.202728092497217 1 0.282431244850159 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UBE4A ENSG00000110344 CDS Human protein_coding chr11:118267077 chr11:118267090 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_33322 0 0 1 0 1 UBE4A chr11:118267029 3'AG 118267029 Downstream 62bp
chr19 48220214 48220214 1 + C T SKCM 48220221 + 48220201 48220241 41 GCAACGCCCTCGTCGTGGACCCGGACAAGCCCTTCCGCAAA GCAACGCCCTCGTTGTGGACCCGGACAAGCCCTTCCGCAAA < 41bp 1 0.548539598779449 1 0.3398617208004 experiment 0.902920802441101 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EHD2 ENSG00000024422 CDS Human protein_coding chr19:48220221 chr19:48220214 synonymous SNV . 0 14 hm5C_associated_SNPs_33323 0 0 1 0 1 EHD2 chr19:48220273 5'GT 48220273 Upstream 60bp
chr20 42695393 42695393 1 + C T SKCM 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTTCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA < 41bp 1 0.464968751437668 1 0.159744024276733 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695393 nonsynonymous SNV 0.947 0 3 hm5C_associated_SNPs_33327 0 0 0 0 1 TOX2 chr20:42695370 3'AG 42695370 Downstream 24bp
chr5 908513 908513 1 + C T SKCM 908507 + 908487 908527 41 CGCCCGAAATGCCTGCAGGGCGGGCACCGAGCCATCAGATG CGCCCGAAATGCCTGCAGGGCGGGCATCGAGCCATCAGATG < 41bp 1 0.608782512804695 1 0.305327832698822 experiment 0.782434974390609 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908507 chr5:908513 nonsynonymous SNV 0.050 3 27 hm5C_associated_SNPs_33330 0 0 0 0 2 TRIP13 chr5:908470 3'AG 908470 Downstream 44bp
chr5 908513 908513 1 + C T SKCM 908507 + 908487 908527 41 CGCCCGAAATGCCTGCAGGGCGGGCACCGAGCCATCAGATG CGCCCGAAATGCCTGCAGGGCGGGCATCGAGCCATCAGATG < 41bp 1 0.608782512804695 1 0.305327832698822 experiment 0.782434974390609 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908507 chr5:908513 nonsynonymous SNV 0.050 3 27 hm5C_associated_SNPs_33330 0 0 0 0 2 TRIP13 chr5:908576 5'GT 908576 Upstream 64bp
chr20 10023937 10023937 1 + G A SKCM 10023948 + 10023928 10023968 41 ACATTTTTGGAAAAAGGAGCCAATCCTAATGCAATCAACTC ACATTTTTGAAAAAAGGAGCCAATCCTAATGCAATCAACTC < 41bp 1 0.0543212996590492 1 0.124373435974121 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKEF1 ENSG00000132623 CDS Human protein_coding chr20:10023948 chr20:10023937 nonsynonymous SNV 0.986 4 10 hm5C_associated_SNPs_33331 0 0 1 0 1 ANKEF1 chr20:10023969 5'GT 10023969 Upstream 33bp
chr5 38885518 38885518 1 + G A SKCM 38885507 + 38885487 38885527 41 CCGAGGACTTCAAGACTTTGCACTGTACTTGGGATCCTGGG CCGAGGACTTCAAGACTTTGCACTGTACTTGAGATCCTGGG < 41bp 1 0.366451388429354 1 0.0783508121967316 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OSMR ENSG00000145623 CDS Human protein_coding chr5:38885507 chr5:38885518 stopgain 0.983 1 32 hm5C_associated_SNPs_33332 0 0 1 0 2 OSMR chr5:38885451 3'AG 38885451 Downstream 68bp
chr5 38885518 38885518 1 + G A SKCM 38885507 + 38885487 38885527 41 CCGAGGACTTCAAGACTTTGCACTGTACTTGGGATCCTGGG CCGAGGACTTCAAGACTTTGCACTGTACTTGAGATCCTGGG < 41bp 1 0.366451388429354 1 0.0783508121967316 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OSMR ENSG00000145623 CDS Human protein_coding chr5:38885507 chr5:38885518 stopgain 0.983 1 32 hm5C_associated_SNPs_33332 0 0 1 0 2 OSMR chr5:38885586 5'GT 38885586 Upstream 69bp
chr20 30526958 30526958 1 + G A SKCM 30526975 + 30526955 30526995 41 AGGGAGAAGCGAGTCGGGGGCTTTGACCTCATGTGGAATGA AGGAAGAAGCGAGTCGGGGGCTTTGACCTCATGTGGAATGA < 41bp 1 0.204139302593259 1 0.0878711640834808 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30526975 chr20:30526958 nonsynonymous SNV 0.989 3 4 hm5C_associated_SNPs_33333 0 0 0 0 1 TTLL9 chr20:30526945 3'AG 30526945 Downstream 14bp
chr5 150639418 150639418 1 + G T SKCM 150639408 + 150639388 150639428 41 ACTCTGGAGCCTGACCCCATCATCGTTCCTGGAAATGTGAC ACTCTGGAGCCTGACCCCATCATCGTTCCTTGAAATGTGAC < 41bp 1 0.480263156318763 1 0.285964816808701 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GM2A ENSG00000196743 CDS Human protein_coding chr5:150639408 chr5:150639418 stopgain 0.180 1 31 hm5C_associated_SNPs_33334 0 0 1 0 1 GM2A chr5:150639477 5'GT 150639477 Upstream 60bp
chr16 2106223 2106223 1 + C T SKCM 2106203 + 2106183 2106223 41 GGTGCTCCCTGCAGGATGATCTGTCTGCTGTGCGTCCGGAC GGTGCTCCCTGCAGGATGATCTGTCTGCTGTGCGTCCGGAT < 41bp 1 0.240743587791694 1 0.176205277442932 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2106203 chr16:2106223 nonsynonymous SNV 0.240 5 41 hm5C_associated_SNPs_33335 0 0 1 0 2 TSC2 chr16:2106197 3'AG 2106197 Downstream 27bp
chr16 2106223 2106223 1 + C T SKCM 2106203 + 2106183 2106223 41 GGTGCTCCCTGCAGGATGATCTGTCTGCTGTGCGTCCGGAC GGTGCTCCCTGCAGGATGATCTGTCTGCTGTGCGTCCGGAT < 41bp 1 0.240743587791694 1 0.176205277442932 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2106203 chr16:2106223 nonsynonymous SNV 0.240 5 41 hm5C_associated_SNPs_33335 0 0 1 0 2 TSC2 chr16:2106245 5'GT 2106245 Upstream 23bp
chr9 140100306 140100306 1 + G A SKCM 140100319 + 140100299 140100339 41 CTGGGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGT CTGGGTCACGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGT < 41bp 1 0.366315229739912 1 0.544072031974792 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100319 chr9:140100306 nonsynonymous SNV 0.993 4 8 hm5C_associated_SNPs_33337 0 0 0 0 1 NDOR1 chr9:140100364 5'GT 140100364 Upstream 59bp
chr9 140100306 140100306 1 + G A SKCM 140100320 + 140100300 140100340 41 TGGGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGTG TGGGTCACGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGTG < 41bp 1 0.729673723542996 1 0.87892073392868 experiment 0.540652552914008 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100320 chr9:140100306 nonsynonymous SNV 0.993 4 7 hm5C_associated_SNPs_33338 0 0 0 0 1 NDOR1 chr9:140100364 5'GT 140100364 Upstream 59bp
chr20 9376258 9376258 1 + C T SKCM 9376240 + 9376220 9376260 41 CCAGCAAACATCTTAGAGGACGATAATGAAGAGGAGATCGA CCAGCAAACATCTTAGAGGACGATAATGAAGAGGAGATTGA < 41bp 1 0.240202325216105 1 0.120026439428329 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB4 ENSG00000101333 CDS Human protein_coding chr20:9376240 chr20:9376258 synonymous SNV . 0 39 hm5C_associated_SNPs_33339 0 0 0 0 2 PLCB4 chr20:9376170 3'AG 9376170 Downstream 89bp
chr20 9376258 9376258 1 + C T SKCM 9376240 + 9376220 9376260 41 CCAGCAAACATCTTAGAGGACGATAATGAAGAGGAGATCGA CCAGCAAACATCTTAGAGGACGATAATGAAGAGGAGATTGA < 41bp 1 0.240202325216105 1 0.120026439428329 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB4 ENSG00000101333 CDS Human protein_coding chr20:9376240 chr20:9376258 synonymous SNV . 0 39 hm5C_associated_SNPs_33339 0 0 0 0 2 PLCB4 chr20:9376265 5'GT 9376265 Upstream 8bp
chr2 189458714 189458714 1 + C T SKCM 189458701 + 189458681 189458721 41 GGGACTAACTCTTGAAGGCACAGTATTTTGTCTCGACCCGT GGGACTAACTCTTGAAGGCACAGTATTTTGTCTTGACCCGT < 41bp 1 0.571912611817823 1 0.11098712682724 experiment 0.856174776364353 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GULP1 ENSG00000144366 CDS Human protein_coding chr2:189458701 chr2:189458714 synonymous SNV . 0 34 hm5C_associated_SNPs_33340 0 0 1 0 1 GULP1 chr2:189458667 3'AG 189458667 Downstream 48bp
chr11 48134384 48134384 1 + C T SKCM 48134404 + 48134384 48134424 41 CTTTCATAAACAGAATGGAACTGGAACACCTCAGGTGGAAA TTTTCATAAACAGAATGGAACTGGAACACCTCAGGTGGAAA < 41bp 1 0.555312963125549 1 0.443437069654465 experiment 0.889374073748901 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48134404 chr11:48134384 synonymous SNV . 0 1 hm5C_associated_SNPs_33342 0 0 1 0 1 PTPRJ chr11:48134299 3'AG 48134299 Downstream 86bp
chr7 2686504 2686504 1 + G A SKCM 2686507 + 2686487 2686527 41 GCCCTGCTGCTCCTGGGGGCCGCCGCCCTGGCCTGCCTCGC GCCCTGCTGCTCCTGGGAGCCGCCGCCCTGGCCTGCCTCGC < 41bp 1 0.642495904528371 1 0.887982368469238 experiment 0.715008190943259 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686507 chr7:2686504 synonymous SNV . 0 18 hm5C_associated_SNPs_33343 0 0 1 0 1 TTYH3 chr7:2686487 3'AG 2686487 Downstream 18bp
chr11 68822718 68822718 1 + G A SKCM 68822727 + 68822707 68822747 41 ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCCCTGGGA ACCAGCACGGCAGACGTGCGCTACCGCGCTGCTCCCTGGGA < 41bp 1 0.38747360746343 1 0.0748665034770966 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68822727 chr11:68822718 synonymous SNV . 0 12 hm5C_associated_SNPs_33344 0 0 0 0 1 TPCN2 chr11:68822643 3'AG 68822643 Downstream 76bp
chr12 3149313 3149313 1 + G A SKCM 3149330 + 3149310 3149350 41 ACCGCATCCACCGGTCCCCGCTCTGTGAGTACATGATCAAC ACCACATCCACCGGTCCCCGCTCTGTGAGTACATGATCAAC < 41bp 1 0.153489797861288 1 0.277596265077591 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3149330 chr12:3149313 nonsynonymous SNV 0.935 4 4 hm5C_associated_SNPs_33346 0 0 1 0 1 TEAD4 chr12:3149273 3'AG 3149273 Downstream 41bp
chr1 183101638 183101638 1 + C T SKCM 183101623 + 183101603 183101643 41 ACAACCTGCTTCTGAGGACACTGGCAGGAGAAAATCAAACA ACAACCTGCTTCTGAGGACACTGGCAGGAGAAAATTAAACA < 41bp 1 0.234918550195939 1 0.212206065654755 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183101623 chr1:183101638 stopgain 0.999 1 36 hm5C_associated_SNPs_33351 0 0 1 0 1 LAMC1 chr1:183101672 5'GT 183101672 Upstream 35bp
chr1 183101638 183101638 1 + C T SKCM 183101642 + 183101622 183101662 41 ACTGGCAGGAGAAAATCAAACAGCATTTGAGATTGAAGAGC ACTGGCAGGAGAAAATTAAACAGCATTTGAGATTGAAGAGC < 41bp 1 0.761985460831742 1 0.464333593845367 experiment 0.476029078336516 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183101642 chr1:183101638 stopgain 0.999 1 17 hm5C_associated_SNPs_33352 0 0 1 0 1 LAMC1 chr1:183101672 5'GT 183101672 Upstream 35bp
chr1 183101638 183101638 1 + C T SKCM 183101645 + 183101625 183101665 41 GGCAGGAGAAAATCAAACAGCATTTGAGATTGAAGAGCTTA GGCAGGAGAAAATTAAACAGCATTTGAGATTGAAGAGCTTA < 41bp 1 0.0243740968102306 1 0.0459299981594086 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183101645 chr1:183101638 stopgain 0.999 1 14 hm5C_associated_SNPs_33353 0 0 1 0 1 LAMC1 chr1:183101672 5'GT 183101672 Upstream 35bp
chr22 44332976 44332976 1 + G A SKCM 44332984 + 44332964 44333004 41 CATCCTCAGAAGGGATGGATCCTGAGGTCGCCATGCCCAGC CATCCTCAGAAGAGATGGATCCTGAGGTCGCCATGCCCAGC < 41bp 1 0.549702270969759 1 0.107577115297318 experiment 0.900595458060482 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44332984 chr22:44332976 nonsynonymous SNV 0.001 0 13 hm5C_associated_SNPs_33357 0 0 1 0 1 PNPLA3 chr22:44332931 3'AG 44332931 Downstream 46bp
chr17 1651929 1651929 1 + G A SKCM 1651935 + 1651915 1651955 41 CCGAGCCTTACCCAGAGAGACTCCTTCCACCTGGACGAGCA CCGAGCCTTACCCAAAGAGACTCCTTCCACCTGGACGAGCA < 41bp 1 0.26564010243655 1 0.196009486913681 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1651935 chr17:1651929 synonymous SNV . 0 15 hm5C_associated_SNPs_33358 0 0 1 0 1 SERPINF2 chr17:1651892 3'AG 1651892 Downstream 38bp
chr17 1651929 1651929 1 + G A SKCM 1651937 + 1651917 1651957 41 GAGCCTTACCCAGAGAGACTCCTTCCACCTGGACGAGCAGT GAGCCTTACCCAAAGAGACTCCTTCCACCTGGACGAGCAGT < 41bp 1 0.00559444201538811 1 0.127499580383301 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1651937 chr17:1651929 synonymous SNV . 0 13 hm5C_associated_SNPs_33359 0 0 1 0 1 SERPINF2 chr17:1651892 3'AG 1651892 Downstream 38bp
chr6 33652666 33652666 1 + G A SKCM 33652675 + 33652655 33652695 41 AAGATCTTCCAGGAGAGCATCGGCCTGGCCATCCACCTGCT AAGATCTTCCAAGAGAGCATCGGCCTGGCCATCCACCTGCT < 41bp 1 0.16951971840833 1 0.336635082960129 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33652675 chr6:33652666 synonymous SNV . 0 12 hm5C_associated_SNPs_33365 0 0 1 0 1 ITPR3 chr6:33652720 5'GT 33652720 Upstream 55bp
chr6 33652667 33652667 1 + G A SKCM 33652675 + 33652655 33652695 41 AAGATCTTCCAGGAGAGCATCGGCCTGGCCATCCACCTGCT AAGATCTTCCAGAAGAGCATCGGCCTGGCCATCCACCTGCT < 41bp 1 0.157654305367596 1 0.255205392837524 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33652675 chr6:33652667 nonsynonymous SNV 0.998 2 13 hm5C_associated_SNPs_33366 0 0 1 0 1 ITPR3 chr6:33652720 5'GT 33652720 Upstream 54bp
chr1 93998573 93998573 1 + C T SKCM 93998568 + 93998548 93998588 41 GAACGCAAAGTTATTCCCATCATTTCAAAATGTTTGGAAGG GAACGCAAAGTTATTCCCATCATTTTAAAATGTTTGGAAGG < 41bp 1 0.071520195671263 1 0.121656686067581 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FNBP1L ENSG00000137942 CDS Human protein_coding chr1:93998568 chr1:93998573 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_33367 0 0 1 0 1 FNBP1L chr1:93998479 3'AG 93998479 Downstream 95bp
chr2 32828126 32828126 1 + T G SKCM 32828127 + 32828107 32828147 41 GACCAGAAGAGAAGTGGAATCCTCAGACCTCAAGCTTTTTG GACCAGAAGAGAAGTGGAAGCCTCAGACCTCAAGCTTTTTG < 41bp 1 0.075299342909481 1 0.103388249874115 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32828127 chr2:32828126 nonsynonymous SNV 0.997 3 20 hm5C_associated_SNPs_33369 0 0 1 0 2 BIRC6 chr2:32828073 3'AG 32828073 Downstream 54bp
chr2 32828126 32828126 1 + T G SKCM 32828127 + 32828107 32828147 41 GACCAGAAGAGAAGTGGAATCCTCAGACCTCAAGCTTTTTG GACCAGAAGAGAAGTGGAAGCCTCAGACCTCAAGCTTTTTG < 41bp 1 0.075299342909481 1 0.103388249874115 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32828127 chr2:32828126 nonsynonymous SNV 0.997 3 20 hm5C_associated_SNPs_33369 0 0 1 0 2 BIRC6 chr2:32828150 5'GT 32828150 Upstream 25bp
chr1 186106694 186106694 1 + C T SKCM 186106679 + 186106659 186106699 41 TGGAGAGCCTGCAGTGTCACCTGTGGAAAAGGCATCCAAAA TGGAGAGCCTGCAGTGTCACCTGTGGAAAAGGCATTCAAAA < 41bp 1 0.1417729159224 1 0.29841023683548 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HMCN1 ENSG00000143341 CDS Human protein_coding chr1:186106679 chr1:186106694 synonymous SNV . 0 36 hm5C_associated_SNPs_33370 0 0 0 0 1 HMCN1 chr1:186106630 3'AG 186106630 Downstream 65bp
chr12 79689913 79689913 1 + C T SKCM 79689904 + 79689884 79689924 41 CGCCTTGGACATGGGGGGCACATCTGATCCTTACGTGAAAG CGCCTTGGACATGGGGGGCACATCTGATCTTTACGTGAAAG < 41bp 1 0.161472215201228 1 0.282908499240875 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYT1 ENSG00000067715 CDS Human protein_coding chr12:79689904 chr12:79689913 nonsynonymous SNV 0.996 4 30 hm5C_associated_SNPs_33371 0 0 0 0 1 SYT1 chr12:79689849 3'AG 79689849 Downstream 65bp
chr13 27845173 27845173 1 + C T SKCM 27845190 + 27845170 27845210 41 TGGCGGTGCTGGGCGCCGGCCGCGTGGGCAAGAGCGGTGAG TGGTGGTGCTGGGCGCCGGCCGCGTGGGCAAGAGCGGTGAG < 41bp 1 0.79266573484656 1 0.527347266674042 experiment 0.41466853030688 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RASL11A ENSG00000122035 CDS Human protein_coding chr13:27845190 chr13:27845173 nonsynonymous SNV 0.761 1 4 hm5C_associated_SNPs_33372 0 0 1 0 1 RASL11A chr13:27845205 5'GT 27845205 Upstream 33bp
chr16 23700989 23700989 1 + T A SKCM 23700976 + 23700956 23700996 41 CTGCACCTCAGCAACGGCAGCGTGCAGATCAACTTCTTCCA CTGCACCTCAGCAACGGCAGCGTGCAGATCAACATCTTCCA < 41bp 1 0.179918235168229 1 0.172124326229095 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700976 chr16:23700989 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_33373 0 0 1 0 1 PLK1 chr16:23700997 5'GT 23700997 Upstream 9bp
chr3 183855532 183855532 1 + C T SKCM 183855522 + 183855502 183855542 41 GATGCCAAGGCTTTGGTGCGCTCTGACTTTCTTCTGGTGTA GATGCCAAGGCTTTGGTGCGCTCTGACTTTTTTCTGGTGTA < 41bp 1 0.372199720459492 1 0.12225678563118 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183855522 chr3:183855532 nonsynonymous SNV 0.989 2 31 hm5C_associated_SNPs_33374 0 0 1 0 1 EIF2B5 chr3:183855593 5'GT 183855593 Upstream 62bp
chr10 121203251 121203251 1 + C T SKCM 121203246 + 121203226 121203266 41 CACAAGTTCTCCGAGGAGGCCAAGTCCATCTGCAAGATGGT CACAAGTTCTCCGAGGAGGCCAAGTTCATCTGCAAGATGGT < 41bp 1 0.235504205904885 1 0.449129194021225 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GRK5 ENSG00000198873 CDS Human protein_coding chr10:121203246 chr10:121203251 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_33375 0 0 0 0 1 GRK5 chr10:121203264 5'GT 121203264 Upstream 14bp
chr7 36445848 36445848 1 + C T SKCM 36445868 + 36445848 36445888 41 CCCTCCCAGACCTCTGCTTTCAAATGCCTCGGCAACTCCAG TCCTCCCAGACCTCTGCTTTCAAATGCCTCGGCAACTCCAG < 41bp 1 0.577341333150811 1 0.328485488891602 experiment 0.845317333698378 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36445868 chr7:36445848 synonymous SNV . 0 1 hm5C_associated_SNPs_33376 0 0 1 0 1 ANLN chr7:36445790 3'AG 36445790 Downstream 59bp
chr10 118314752 118314752 1 + G A SKCM 118314736 + 118314716 118314756 41 CAGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGC CAGGGCACACCTGAATTAGTCCGATTGGACCCCAGCAATGC < 41bp 1 0.34712443099016 1 0.313149631023407 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314736 chr10:118314752 nonsynonymous SNV 0.989 5 37 hm5C_associated_SNPs_33377 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 58bp
chr10 118314752 118314752 1 + G A SKCM 118314737 + 118314717 118314757 41 AGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGCC AGGGCACACCTGAATTAGTCCGATTGGACCCCAGCAATGCC < 41bp 1 0.225289807818458 1 0.098625123500824 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314737 chr10:118314752 nonsynonymous SNV 0.989 5 36 hm5C_associated_SNPs_33378 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 58bp
chr10 118314752 118314752 1 + G A SKCM 118314745 + 118314725 118314765 41 CCTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGT CCTGAATTAGTCCGATTGGACCCCAGCAATGCCAAATTTGT < 41bp 1 0.496287238336053 1 0.0659019351005554 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314745 chr10:118314752 nonsynonymous SNV 0.989 5 28 hm5C_associated_SNPs_33379 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 58bp
chr10 118314752 118314752 1 + G A SKCM 118314746 + 118314726 118314766 41 CTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTG CTGAATTAGTCCGATTGGACCCCAGCAATGCCAAATTTGTG < 41bp 1 0.153544712622741 1 0.125103205442429 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314746 chr10:118314752 nonsynonymous SNV 0.989 5 27 hm5C_associated_SNPs_33380 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 58bp
chr10 118314752 118314752 1 + G A SKCM 118314747 + 118314727 118314767 41 TGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGG TGAATTAGTCCGATTGGACCCCAGCAATGCCAAATTTGTGG < 41bp 1 0.235358797908763 1 0.155459821224213 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314747 chr10:118314752 nonsynonymous SNV 0.989 5 26 hm5C_associated_SNPs_33381 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 58bp
chr10 118314752 118314752 1 + G A SKCM 118314751 + 118314731 118314771 41 TTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGATGT TTAGTCCGATTGGACCCCAGCAATGCCAAATTTGTGGATGT < 41bp 1 0.263819758499432 1 0.0946511924266815 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314751 chr10:118314752 nonsynonymous SNV 0.989 5 22 hm5C_associated_SNPs_33382 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 58bp
chr10 118314752 118314752 1 + G A SKCM 118314756 + 118314736 118314776 41 CCGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTC CCGATTGGACCCCAGCAATGCCAAATTTGTGGATGTAATTC < 41bp 1 0.382092999498644 1 0.0480976700782776 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314756 chr10:118314752 nonsynonymous SNV 0.989 5 17 hm5C_associated_SNPs_33383 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 58bp
chr10 118314752 118314752 1 + G A SKCM 118314757 + 118314737 118314777 41 CGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTCA CGATTGGACCCCAGCAATGCCAAATTTGTGGATGTAATTCA < 41bp 1 0.392655821623222 1 0.187908530235291 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314757 chr10:118314752 nonsynonymous SNV 0.989 5 16 hm5C_associated_SNPs_33384 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 58bp
chr10 12191686 12191686 1 + A T SKCM 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT AATCATTGAAGTTGGAGATTCACCGAAAGATAGAGCTTTAT < 41bp 1 0.585274674608275 1 0.0524718761444092 experiment 0.82945065078345 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191686 nonsynonymous SNV 0.999 1 20 hm5C_associated_SNPs_33385 0 0 1 2 2 SEC61A2 chr10:12191594 3'AG 12191594 Downstream 93bp
chr10 12191686 12191686 1 + A T SKCM 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT AATCATTGAAGTTGGAGATTCACCGAAAGATAGAGCTTTAT < 41bp 1 0.585274674608275 1 0.0524718761444092 experiment 0.82945065078345 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191686 nonsynonymous SNV 0.999 1 20 hm5C_associated_SNPs_33385 0 0 1 2 2 SEC61A2 chr10:12191725 5'GT 12191725 Upstream 40bp
chr11 57574420 57574420 1 + C T SKCM 57574432 + 57574412 57574452 41 AAACGATACAGTGGATTTCCCTAAAAGAACGAGTCCAGCTC AAACGATATAGTGGATTTCCCTAAAAGAACGAGTCCAGCTC < 41bp 1 0.674291769185858 1 0.642877340316772 experiment 0.651416461628284 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57574432 chr11:57574420 nonsynonymous SNV 1.000 0 9 hm5C_associated_SNPs_33386 0 0 1 0 2 CTNND1 chr11:57574387 3'AG 57574387 Downstream 34bp
chr11 57574420 57574420 1 + C T SKCM 57574432 + 57574412 57574452 41 AAACGATACAGTGGATTTCCCTAAAAGAACGAGTCCAGCTC AAACGATATAGTGGATTTCCCTAAAAGAACGAGTCCAGCTC < 41bp 1 0.674291769185858 1 0.642877340316772 experiment 0.651416461628284 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57574432 chr11:57574420 nonsynonymous SNV 1.000 0 9 hm5C_associated_SNPs_33386 0 0 1 0 2 CTNND1 chr11:57574455 5'GT 57574455 Upstream 36bp
chr1 155279924 155279924 1 + G A SKCM 155279915 + 155279895 155279935 41 AAGCAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGGT AAGCAGGATTTCGTTCAGCACTTCTCCCAAATCGTTAGGGT < 41bp 1 0.146610609688575 1 0.116032689809799 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155279915 chr1:155279924 synonymous SNV . 0 30 hm5C_associated_SNPs_33387 0 0 1 0 3 FDPS chr1:155279834 3'AG 155279834 Downstream 91bp
chr1 155279924 155279924 1 + G A SKCM 155279915 + 155279895 155279935 41 AAGCAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGGT AAGCAGGATTTCGTTCAGCACTTCTCCCAAATCGTTAGGGT < 41bp 1 0.146610609688575 1 0.116032689809799 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155279915 chr1:155279924 synonymous SNV . 0 30 hm5C_associated_SNPs_33387 0 0 1 0 3 FDPS chr1:155279855 3'AG 155279855 Downstream 70bp
chr1 155279924 155279924 1 + G A SKCM 155279915 + 155279895 155279935 41 AAGCAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGGT AAGCAGGATTTCGTTCAGCACTTCTCCCAAATCGTTAGGGT < 41bp 1 0.146610609688575 1 0.116032689809799 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155279915 chr1:155279924 synonymous SNV . 0 30 hm5C_associated_SNPs_33387 0 0 1 0 3 FDPS chr1:155279996 5'GT 155279996 Upstream 73bp
chr19 18245446 18245446 1 + C T SKCM 18245431 + 18245411 18245451 41 CACATCAAGCTCACGGACTTCGGCCTGTCCAAGATCGGCCT CACATCAAGCTCACGGACTTCGGCCTGTCCAAGATTGGCCT < 41bp 1 0.272144072124239 1 0.503539800643921 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18245431 chr19:18245446 synonymous SNV . 0 36 hm5C_associated_SNPs_33390 0 0 0 0 2 MAST3 chr19:18245389 3'AG 18245389 Downstream 58bp
chr19 18245446 18245446 1 + C T SKCM 18245431 + 18245411 18245451 41 CACATCAAGCTCACGGACTTCGGCCTGTCCAAGATCGGCCT CACATCAAGCTCACGGACTTCGGCCTGTCCAAGATTGGCCT < 41bp 1 0.272144072124239 1 0.503539800643921 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18245431 chr19:18245446 synonymous SNV . 0 36 hm5C_associated_SNPs_33390 0 0 0 0 2 MAST3 chr19:18245521 5'GT 18245521 Upstream 76bp
chr1 161134339 161134339 1 + C T SKCM 161134359 + 161134339 161134379 41 CGGCAGAAAACTCGAAGTACCAAAAAGTTGACAGTACAAAG TGGCAGAAAACTCGAAGTACCAAAAAGTTGACAGTACAAAG < 41bp 1 0.450161267443557 1 0.466075599193573 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161134359 chr1:161134339 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_33391 0 0 1 0 1 USP21 chr1:161134324 3'AG 161134324 Downstream 16bp
chr2 105959566 105959566 1 + C T SKCM 105959573 + 105959553 105959593 41 AACAGAACCATGACTTAACGCATAGGAAAAGTCCTTCAGGC AACAGAACCATGATTTAACGCATAGGAAAAGTCCTTCAGGC < 41bp 1 0.471371208763425 1 0.471932142972946 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C2orf49 ENSG00000135974 CDS Human protein_coding chr2:105959573 chr2:105959566 synonymous SNV . 0 14 hm5C_associated_SNPs_33392 0 0 1 0 1 C2orf49 chr2:105959558 3'AG 105959558 Downstream 9bp
chr3 17056253 17056253 1 + C T SKCM 17056251 + 17056231 17056271 41 GCCTCTCCTCTGTGGCCAATCTCATGCAGTGCATGTTGGCG GCCTCTCCTCTGTGGCCAATCTTATGCAGTGCATGTTGGCG < 41bp 1 0.257009343995209 1 0.0627868175506592 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCL2 ENSG00000154822 CDS Human protein_coding chr3:17056251 chr3:17056253 synonymous SNV . 0 23 hm5C_associated_SNPs_33393 0 0 1 0 1 PLCL2 chr3:17056200 3'AG 17056200 Downstream 54bp
chr22 26291128 26291128 1 + G A SKCM 26291140 + 26291120 26291160 41 CAGCAGACGAGTGGCAGATGCGCTTCGACTGTGCTCAGATG CAGCAGACAAGTGGCAGATGCGCTTCGACTGTGCTCAGATG < 41bp 1 0.0735904891988738 1 0.258588135242462 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26291140 chr22:26291128 nonsynonymous SNV 0.871 1 9 hm5C_associated_SNPs_33394 0 0 1 0 2 MYO18B chr22:26291123 3'AG 26291123 Downstream 6bp
chr22 26291128 26291128 1 + G A SKCM 26291140 + 26291120 26291160 41 CAGCAGACGAGTGGCAGATGCGCTTCGACTGTGCTCAGATG CAGCAGACAAGTGGCAGATGCGCTTCGACTGTGCTCAGATG < 41bp 1 0.0735904891988738 1 0.258588135242462 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26291140 chr22:26291128 nonsynonymous SNV 0.871 1 9 hm5C_associated_SNPs_33394 0 0 1 0 2 MYO18B chr22:26291126 3'AG 26291126 Downstream 3bp
chr20 45801399 45801399 1 + G A SKCM 45801382 + 45801362 45801402 41 AACTTCTCCGCTGACGGCTTCCACAGTTCGGCCCCAGGAGC AACTTCTCCGCTGACGGCTTCCACAGTTCGGCCCCAGAAGC < 41bp 1 0.311987491616962 1 0.249979794025421 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EYA2 ENSG00000064655 CDS Human protein_coding chr20:45801382 chr20:45801399 nonsynonymous SNV 0.472 3 38 hm5C_associated_SNPs_33395 0 0 0 0 1 EYA2 chr20:45801355 3'AG 45801355 Downstream 45bp
chr19 41239111 41239111 1 + C A SKCM 41239094 + 41239074 41239114 41 GGAAGAGGAGCTAGTGAAGGCACGGGAACGTCCCCGTCCCC GGAAGAGGAGCTAGTGAAGGCACGGGAACGTCCCCGTACCC < 41bp 1 0.782230532788311 1 0.788034915924072 experiment 0.435538934423377 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITPKC ENSG00000086544 CDS Human protein_coding chr19:41239094 chr19:41239111 nonsynonymous SNV 0.797 3 38 hm5C_associated_SNPs_33396 0 0 1 0 1 ITPKC chr19:41239065 3'AG 41239065 Downstream 47bp
chr16 66998560 66998560 1 + G A SKCM 66998564 + 66998544 66998584 41 GCAGGGCTGTTCCACAGAGCCATCACACAGAGTGGGGTCAT GCAGGGCTGTTCCACAAAGCCATCACACAGAGTGGGGTCAT < 41bp 1 0.500314834289208 1 0.102067887783051 experiment 0.999370331421583 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:66998564 chr16:66998560 nonsynonymous SNV 0.842 3 17 hm5C_associated_SNPs_33397 0 0 1 0 2 CES3 chr16:66998526 3'AG 66998526 Downstream 35bp
chr16 66998560 66998560 1 + G A SKCM 66998564 + 66998544 66998584 41 GCAGGGCTGTTCCACAGAGCCATCACACAGAGTGGGGTCAT GCAGGGCTGTTCCACAAAGCCATCACACAGAGTGGGGTCAT < 41bp 1 0.500314834289208 1 0.102067887783051 experiment 0.999370331421583 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:66998564 chr16:66998560 nonsynonymous SNV 0.842 3 17 hm5C_associated_SNPs_33397 0 0 1 0 2 CES3 chr16:66998630 5'GT 66998630 Upstream 71bp
chr18 13067897 13067897 1 + C T SKCM 13067893 + 13067873 13067913 41 CTTATGGAGGCTGGAAAGCCCTCCCACTAAAATTGATAAAC CTTATGGAGGCTGGAAAGCCCTCCTACTAAAATTGATAAAC < 41bp 1 0.367991694764351 1 0.611255347728729 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13067893 chr18:13067897 nonsynonymous SNV 0.711 4 25 hm5C_associated_SNPs_33398 0 0 1 0 2 CEP192 chr18:13067830 3'AG 13067830 Downstream 68bp
chr18 13067897 13067897 1 + C T SKCM 13067893 + 13067873 13067913 41 CTTATGGAGGCTGGAAAGCCCTCCCACTAAAATTGATAAAC CTTATGGAGGCTGGAAAGCCCTCCTACTAAAATTGATAAAC < 41bp 1 0.367991694764351 1 0.611255347728729 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13067893 chr18:13067897 nonsynonymous SNV 0.711 4 25 hm5C_associated_SNPs_33398 0 0 1 0 2 CEP192 chr18:13067955 5'GT 13067955 Upstream 59bp
chr6 13591963 13591963 1 + C T SKCM 13591954 + 13591934 13591974 41 CCGTCCCGGGTGTGGGAGTTCTACCACTACCGGCGGGAGGT CCGTCCCGGGTGTGGGAGTTCTACCACTATCGGCGGGAGGT < 41bp 1 0.568414720894659 1 0.142677932977676 experiment 0.863170558210682 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SIRT5 ENSG00000124523 CDS Human protein_coding chr6:13591954 chr6:13591963 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_33399 0 0 0 0 1 SIRT5 chr6:13591901 3'AG 13591901 Downstream 63bp
chr8 61757450 61757450 1 + C T SKCM 61757430 + 61757410 61757450 41 ATTTGCTTTGCAGTTGGGGACGGTGGACAGACATTCTTTCC ATTTGCTTTGCAGTTGGGGACGGTGGACAGACATTCTTTCT < 41bp 1 0.160241917263428 1 0.446274638175964 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHD7 ENSG00000171316 CDS Human protein_coding chr8:61757430 chr8:61757450 synonymous SNV . 0 41 hm5C_associated_SNPs_33400 0 0 1 0 1 CHD7 chr8:61757423 3'AG 61757423 Downstream 28bp
chr10 71154787 71154787 1 + C T SKCM 71154804 + 71154784 71154824 41 CCTCTTCCGAGGGCAGATCTCTGAGACGCTGAAGACCCGGG CCTTTTCCGAGGGCAGATCTCTGAGACGCTGAAGACCCGGG < 41bp 1 0.708436431907966 1 0.675412774085999 experiment 0.583127136184068 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HK1 ENSG00000156515 CDS Human protein_coding chr10:71154804 chr10:71154787 synonymous SNV . 0 4 hm5C_associated_SNPs_33401 0 0 1 0 2 HK1 chr10:71154706 3'AG 71154706 Downstream 82bp
chr10 71154787 71154787 1 + C T SKCM 71154804 + 71154784 71154824 41 CCTCTTCCGAGGGCAGATCTCTGAGACGCTGAAGACCCGGG CCTTTTCCGAGGGCAGATCTCTGAGACGCTGAAGACCCGGG < 41bp 1 0.708436431907966 1 0.675412774085999 experiment 0.583127136184068 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HK1 ENSG00000156515 CDS Human protein_coding chr10:71154804 chr10:71154787 synonymous SNV . 0 4 hm5C_associated_SNPs_33401 0 0 1 0 2 HK1 chr10:71154861 5'GT 71154861 Upstream 75bp
chr3 186504002 186504002 1 + G A SKCM 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCAGATGAAATGTTAAGCCGTGGTTTTAAGGATCAAAT < 41bp 1 0.216505381545031 1 0.192969530820847 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186504002 synonymous SNV . 0 18 hm5C_associated_SNPs_33402 0 0 1 0 2 EIF4A2 chr3:186503953 3'AG 186503953 Downstream 50bp
chr3 186504002 186504002 1 + G A SKCM 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCAGATGAAATGTTAAGCCGTGGTTTTAAGGATCAAAT < 41bp 1 0.216505381545031 1 0.192969530820847 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186504002 synonymous SNV . 0 18 hm5C_associated_SNPs_33402 0 0 1 0 2 EIF4A2 chr3:186504062 5'GT 186504062 Upstream 61bp
chr19 41239112 41239112 1 + C T SKCM 41239094 + 41239074 41239114 41 GGAAGAGGAGCTAGTGAAGGCACGGGAACGTCCCCGTCCCC GGAAGAGGAGCTAGTGAAGGCACGGGAACGTCCCCGTCTCC < 41bp 1 0.770245670604955 1 0.808062076568604 experiment 0.459508658790089 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITPKC ENSG00000086544 CDS Human protein_coding chr19:41239094 chr19:41239112 nonsynonymous SNV 0.878 1 39 hm5C_associated_SNPs_33403 0 0 1 0 1 ITPKC chr19:41239065 3'AG 41239065 Downstream 48bp
chr7 150769149 150769149 1 + C T SKCM 150769166 + 150769146 150769186 41 TCCCGCTTCACCCAGGAGATCTTCGCCTTCTTGATCTCACT TCCTGCTTCACCCAGGAGATCTTCGCCTTCTTGATCTCACT < 41bp 1 0.0674690787139932 1 0.0291681289672852 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150769166 chr7:150769149 nonsynonymous SNV 0.997 5 4 hm5C_associated_SNPs_33405 0 0 1 0 1 SLC4A2 chr7:150769223 5'GT 150769223 Upstream 75bp
chrX 12838868 12838868 1 + C T SKCM 12838861 + 12838841 12838881 41 AAATAATGCCGCCTTTGAGGCTGTTGTCGTCACAAACACAA AAATAATGCCGCCTTTGAGGCTGTTGTTGTCACAAACACAA < 41bp 1 0.298945895621051 1 0.0761541128158569 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12838861 chrX:12838868 synonymous SNV . 0 28 hm5C_associated_SNPs_33411 0 0 1 0 1 PRPS2 chrX:12838922 5'GT 12838922 Upstream 55bp
chr20 61449889 61449889 1 + G A SKCM 61449900 + 61449880 61449920 41 GTCCTCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGC GTCCTCCAGATCTGCCTGGGCCCCCGGTGAGTGTCCCTGGC < 41bp 1 0.105608651351608 1 0.0965258777141571 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449900 chr20:61449889 nonsynonymous SNV 0.953 4 10 hm5C_associated_SNPs_33412 0 0 1 0 2 COL9A3 chr20:61449870 3'AG 61449870 Downstream 20bp
chr20 61449889 61449889 1 + G A SKCM 61449900 + 61449880 61449920 41 GTCCTCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGC GTCCTCCAGATCTGCCTGGGCCCCCGGTGAGTGTCCCTGGC < 41bp 1 0.105608651351608 1 0.0965258777141571 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449900 chr20:61449889 nonsynonymous SNV 0.953 4 10 hm5C_associated_SNPs_33412 0 0 1 0 2 COL9A3 chr20:61449905 5'GT 61449905 Upstream 17bp
chr20 61449889 61449889 1 + G A SKCM 61449901 + 61449881 61449921 41 TCCTCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCT TCCTCCAGATCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCT < 41bp 1 0.214220364529363 1 0.233188092708588 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449901 chr20:61449889 nonsynonymous SNV 0.953 4 9 hm5C_associated_SNPs_33413 0 0 1 0 2 COL9A3 chr20:61449870 3'AG 61449870 Downstream 20bp
chr20 61449889 61449889 1 + G A SKCM 61449901 + 61449881 61449921 41 TCCTCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCT TCCTCCAGATCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCT < 41bp 1 0.214220364529363 1 0.233188092708588 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449901 chr20:61449889 nonsynonymous SNV 0.953 4 9 hm5C_associated_SNPs_33413 0 0 1 0 2 COL9A3 chr20:61449905 5'GT 61449905 Upstream 17bp
chr20 61449889 61449889 1 + G A SKCM 61449902 + 61449882 61449922 41 CCTCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTG CCTCCAGATCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTG < 41bp 1 0.513432158079064 1 0.552123069763184 experiment 0.973135683841871 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449902 chr20:61449889 nonsynonymous SNV 0.953 4 8 hm5C_associated_SNPs_33414 0 0 1 0 2 COL9A3 chr20:61449870 3'AG 61449870 Downstream 20bp
chr20 61449889 61449889 1 + G A SKCM 61449902 + 61449882 61449922 41 CCTCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTG CCTCCAGATCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTG < 41bp 1 0.513432158079064 1 0.552123069763184 experiment 0.973135683841871 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449902 chr20:61449889 nonsynonymous SNV 0.953 4 8 hm5C_associated_SNPs_33414 0 0 1 0 2 COL9A3 chr20:61449905 5'GT 61449905 Upstream 17bp
chr20 61449889 61449889 1 + G A SKCM 61449903 + 61449883 61449923 41 CTCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTGG CTCCAGATCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTGG < 41bp 1 0.332368259411976 1 0.720963776111603 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449903 chr20:61449889 nonsynonymous SNV 0.953 4 7 hm5C_associated_SNPs_33415 0 0 1 0 2 COL9A3 chr20:61449870 3'AG 61449870 Downstream 20bp
chr20 61449889 61449889 1 + G A SKCM 61449903 + 61449883 61449923 41 CTCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTGG CTCCAGATCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTGG < 41bp 1 0.332368259411976 1 0.720963776111603 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449903 chr20:61449889 nonsynonymous SNV 0.953 4 7 hm5C_associated_SNPs_33415 0 0 1 0 2 COL9A3 chr20:61449905 5'GT 61449905 Upstream 17bp
chr20 61449889 61449889 1 + G A SKCM 61449904 + 61449884 61449924 41 TCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTGGG TCCAGATCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTGGG < 41bp 1 0.313380558052495 1 0.639410734176636 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449904 chr20:61449889 nonsynonymous SNV 0.953 4 6 hm5C_associated_SNPs_33416 0 0 1 0 2 COL9A3 chr20:61449870 3'AG 61449870 Downstream 20bp
chr20 61449889 61449889 1 + G A SKCM 61449904 + 61449884 61449924 41 TCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTGGG TCCAGATCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTGGG < 41bp 1 0.313380558052495 1 0.639410734176636 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449904 chr20:61449889 nonsynonymous SNV 0.953 4 6 hm5C_associated_SNPs_33416 0 0 1 0 2 COL9A3 chr20:61449905 5'GT 61449905 Upstream 17bp
chr10 118313319 118313319 1 + G A SKCM 118313333 + 118313313 118313353 41 TGGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTT TGGAAGAAGAACCAATGGGACCATTGGACGCATCACAGGTT < 41bp 1 0.143064762408813 1 0.0746864676475525 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313333 chr10:118313319 synonymous SNV . 0 7 hm5C_associated_SNPs_33420 0 0 0 0 2 PNLIP chr10:118313239 3'AG 118313239 Downstream 81bp
chr10 118313319 118313319 1 + G A SKCM 118313333 + 118313313 118313353 41 TGGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTT TGGAAGAAGAACCAATGGGACCATTGGACGCATCACAGGTT < 41bp 1 0.143064762408813 1 0.0746864676475525 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313333 chr10:118313319 synonymous SNV . 0 7 hm5C_associated_SNPs_33420 0 0 0 0 2 PNLIP chr10:118313350 5'GT 118313350 Upstream 32bp
chr10 118313319 118313319 1 + G A SKCM 118313334 + 118313314 118313354 41 GGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTTG GGAAGAAGAACCAATGGGACCATTGGACGCATCACAGGTTG < 41bp 1 0.472603343039546 1 0.11584347486496 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313334 chr10:118313319 synonymous SNV . 0 6 hm5C_associated_SNPs_33421 0 0 0 0 2 PNLIP chr10:118313239 3'AG 118313239 Downstream 81bp
chr10 118313319 118313319 1 + G A SKCM 118313334 + 118313314 118313354 41 GGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTTG GGAAGAAGAACCAATGGGACCATTGGACGCATCACAGGTTG < 41bp 1 0.472603343039546 1 0.11584347486496 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313334 chr10:118313319 synonymous SNV . 0 6 hm5C_associated_SNPs_33421 0 0 0 0 2 PNLIP chr10:118313350 5'GT 118313350 Upstream 32bp
chr1 46872007 46872007 1 + C T SKCM 46871992 + 46871972 46872012 41 CGAGCCCTGCTGTGTGAGGACATGTTCCGCTTGGACCCCAC CGAGCCCTGCTGTGTGAGGACATGTTCCGCTTGGATCCCAC < 41bp 1 0.3469845270697 1 0.0752736032009125 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAH ENSG00000117480 CDS Human protein_coding chr1:46871992 chr1:46872007 synonymous SNV . 0 36 hm5C_associated_SNPs_33422 0 0 1 0 2 FAAH chr1:46871916 3'AG 46871916 Downstream 92bp
chr1 46872007 46872007 1 + C T SKCM 46871992 + 46871972 46872012 41 CGAGCCCTGCTGTGTGAGGACATGTTCCGCTTGGACCCCAC CGAGCCCTGCTGTGTGAGGACATGTTCCGCTTGGATCCCAC < 41bp 1 0.3469845270697 1 0.0752736032009125 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAH ENSG00000117480 CDS Human protein_coding chr1:46871992 chr1:46872007 synonymous SNV . 0 36 hm5C_associated_SNPs_33422 0 0 1 0 2 FAAH chr1:46872040 5'GT 46872040 Upstream 34bp
chr1 44083235 44083235 1 + C T SKCM 44083229 + 44083209 44083249 41 CACTCTCGAGTCATCCTTACCTCTATCGATGGTGAGCCAAG CACTCTCGAGTCATCCTTACCTCTATTGATGGTGAGCCAAG < 41bp 1 0.45025438364465 1 0.896922886371613 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44083229 chr1:44083235 synonymous SNV . 0 27 hm5C_associated_SNPs_33423 0 0 0 0 1 PTPRF chr1:44083239 5'GT 44083239 Upstream 5bp
chr3 32483433 32483433 1 + G A SKCM 32483437 + 32483417 32483457 41 TTTGCGACTTGATAATGATCCTCGCCTTTTACCTGGTCCAC TTTGCGACTTGATAATAATCCTCGCCTTTTACCTGGTCCAC < 41bp 1 0.549572182612623 1 0.0896487534046173 experiment 0.900855634774753 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32483437 chr3:32483433 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_33424 0 0 1 0 1 CMTM7 chr3:32483505 5'GT 32483505 Upstream 73bp
chr2 239038790 239038790 1 + C T SKCM 239038799 + 239038779 239038819 41 GGAGCTCAGGCCCCACGGAGCAGGCGGCCTGGAGGTACTCA GGAGCTCAGGCTCCACGGAGCAGGCGGCCTGGAGGTACTCA < 41bp 1 0.524460674403921 1 0.87579071521759 experiment 0.951078651192159 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ESPNL ENSG00000144488 CDS Human protein_coding chr2:239038799 chr2:239038790 nonsynonymous SNV 0.002 0 12 hm5C_associated_SNPs_33425 0 0 0 0 1 ESPNL chr2:239038769 3'AG 239038769 Downstream 22bp
chr13 27216450 27216450 1 + C A SKCM 27216436 + 27216416 27216456 41 AGTGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAG AGTGAAGAGGAACATTGAGCCCCGGCACTTGTGCAGGGGAG < 41bp 1 0.451939909606462 1 0.33665457367897 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216436 chr13:27216450 synonymous SNV . 0 35 hm5C_associated_SNPs_33426 0 0 1 0 2 WASF3 chr13:27216398 3'AG 27216398 Downstream 53bp
chr13 27216450 27216450 1 + C A SKCM 27216436 + 27216416 27216456 41 AGTGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAG AGTGAAGAGGAACATTGAGCCCCGGCACTTGTGCAGGGGAG < 41bp 1 0.451939909606462 1 0.33665457367897 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216436 chr13:27216450 synonymous SNV . 0 35 hm5C_associated_SNPs_33426 0 0 1 0 2 WASF3 chr13:27216540 5'GT 27216540 Upstream 91bp
chr13 27216450 27216450 1 + C A SKCM 27216437 + 27216417 27216457 41 GTGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGC GTGAAGAGGAACATTGAGCCCCGGCACTTGTGCAGGGGAGC < 41bp 1 0.182237788345479 1 0.689877390861511 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216437 chr13:27216450 synonymous SNV . 0 34 hm5C_associated_SNPs_33427 0 0 1 0 2 WASF3 chr13:27216398 3'AG 27216398 Downstream 53bp
chr13 27216450 27216450 1 + C A SKCM 27216437 + 27216417 27216457 41 GTGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGC GTGAAGAGGAACATTGAGCCCCGGCACTTGTGCAGGGGAGC < 41bp 1 0.182237788345479 1 0.689877390861511 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216437 chr13:27216450 synonymous SNV . 0 34 hm5C_associated_SNPs_33427 0 0 1 0 2 WASF3 chr13:27216540 5'GT 27216540 Upstream 91bp
chr13 27216450 27216450 1 + C A SKCM 27216438 + 27216418 27216458 41 TGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCT TGAAGAGGAACATTGAGCCCCGGCACTTGTGCAGGGGAGCT < 41bp 1 0.542689864049968 1 0.440671294927597 experiment 0.914620271900064 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216438 chr13:27216450 synonymous SNV . 0 33 hm5C_associated_SNPs_33428 0 0 1 0 2 WASF3 chr13:27216398 3'AG 27216398 Downstream 53bp
chr13 27216450 27216450 1 + C A SKCM 27216438 + 27216418 27216458 41 TGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCT TGAAGAGGAACATTGAGCCCCGGCACTTGTGCAGGGGAGCT < 41bp 1 0.542689864049968 1 0.440671294927597 experiment 0.914620271900064 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216438 chr13:27216450 synonymous SNV . 0 33 hm5C_associated_SNPs_33428 0 0 1 0 2 WASF3 chr13:27216540 5'GT 27216540 Upstream 91bp
chr13 27216450 27216450 1 + C A SKCM 27216441 + 27216421 27216461 41 AGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCTCTG AGAGGAACATTGAGCCCCGGCACTTGTGCAGGGGAGCTCTG < 41bp 1 0.210688589538552 1 0.0877862870693207 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216441 chr13:27216450 synonymous SNV . 0 30 hm5C_associated_SNPs_33429 0 0 1 0 2 WASF3 chr13:27216398 3'AG 27216398 Downstream 53bp
chr13 27216450 27216450 1 + C A SKCM 27216441 + 27216421 27216461 41 AGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCTCTG AGAGGAACATTGAGCCCCGGCACTTGTGCAGGGGAGCTCTG < 41bp 1 0.210688589538552 1 0.0877862870693207 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216441 chr13:27216450 synonymous SNV . 0 30 hm5C_associated_SNPs_33429 0 0 1 0 2 WASF3 chr13:27216540 5'GT 27216540 Upstream 91bp
chr1 44083233 44083233 1 + A T SKCM 44083229 + 44083209 44083249 41 CACTCTCGAGTCATCCTTACCTCTATCGATGGTGAGCCAAG CACTCTCGAGTCATCCTTACCTCTTTCGATGGTGAGCCAAG < 41bp 1 0.139345644468602 1 0.32758304476738 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44083229 chr1:44083233 nonsynonymous SNV 0.888 1 25 hm5C_associated_SNPs_33434 0 0 0 0 1 PTPRF chr1:44083239 5'GT 44083239 Upstream 7bp
chr14 37739697 37739697 1 + G A SKCM 37739679 + 37739659 37739699 41 AGAGAAAACTAAAGTTTAAGCTGGAACTCCAAGAGAAAGAA AGAGAAAACTAAAGTTTAAGCTGGAACTCCAAGAGAAAAAA < 41bp 1 0.637091404681531 1 0.52031135559082 experiment 0.725817190636938 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MIPOL1 ENSG00000151338 CDS Human protein_coding chr14:37739679 chr14:37739697 nonsynonymous SNV 0.989 0 39 hm5C_associated_SNPs_33436 0 0 1 0 2 MIPOL1 chr14:37739625 3'AG 37739625 Downstream 73bp
chr14 37739697 37739697 1 + G A SKCM 37739679 + 37739659 37739699 41 AGAGAAAACTAAAGTTTAAGCTGGAACTCCAAGAGAAAGAA AGAGAAAACTAAAGTTTAAGCTGGAACTCCAAGAGAAAAAA < 41bp 1 0.637091404681531 1 0.52031135559082 experiment 0.725817190636938 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MIPOL1 ENSG00000151338 CDS Human protein_coding chr14:37739679 chr14:37739697 nonsynonymous SNV 0.989 0 39 hm5C_associated_SNPs_33436 0 0 1 0 2 MIPOL1 chr14:37739730 5'GT 37739730 Upstream 34bp
chr19 3119228 3119228 1 + C T SKCM 3119221 + 3119201 3119241 41 CAGAACCGGATGGAGGAGAGCAAAGCCCTGTTCCGGACCAT CAGAACCGGATGGAGGAGAGCAAAGCCTTGTTCCGGACCAT < 41bp 1 0.286356966006671 1 0.435345113277435 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GNA11 ENSG00000088256 CDS Human protein_coding chr19:3119221 chr19:3119228 synonymous SNV . 0 28 hm5C_associated_SNPs_33438 0 0 1 0 1 GNA11 chr19:3119204 3'AG 3119204 Downstream 25bp
chr1 155255658 155255658 1 + C T SKCM 155255657 + 155255637 155255677 41 TCTCGTGGTGCGTGAGGGCTCCGTGGGGAGGAAGATGTACT TCTCGTGGTGCGTGAGGGCTCTGTGGGGAGGAAGATGTACT < 41bp 1 0.592757175073829 1 0.213157206773758 experiment 0.814485649852343 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HCN3 ENSG00000143630 CDS Human protein_coding chr1:155255657 chr1:155255658 synonymous SNV . 0 22 hm5C_associated_SNPs_33439 0 0 0 0 1 HCN3 chr1:155255755 5'GT 155255755 Upstream 98bp
chr10 75529378 75529378 1 + C T SKCM 75529387 + 75529367 75529407 41 ATCCAGCATATCGGGGAGTCCTGAATAGCCCTGTGAAGGCT ATCCAGCATATTGGGGAGTCCTGAATAGCCCTGTGAAGGCT < 41bp 1 0.731385506840385 1 0.745292663574219 experiment 0.53722898631923 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529387 chr10:75529378 nonsynonymous SNV 0.996 2 12 hm5C_associated_SNPs_33442 0 0 1 0 1 SEC24C chr10:75529373 3'AG 75529373 Downstream 6bp
chr7 55259426 55259426 1 + G A SKCM 55259432 + 55259412 55259452 41 GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGA GGCATGAACTACTTAGAGGACCGTCGCTTGGTGCACCGCGA < 41bp 1 0.075492796139961 1 0.243246734142303 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55259432 chr7:55259426 synonymous SNV . 0 15 hm5C_associated_SNPs_33444 1 0 1 0 1 EGFR chr7:55259412 3'AG 55259412 Downstream 15bp
chr16 57254647 57254647 1 + T C SKCM 57254661 + 57254641 57254681 41 CAGTTTTAAAAGAAGGTAGACAGCTGACCTATGAGAAAGTG CAGTTTCAAAAGAAGGTAGACAGCTGACCTATGAGAAAGTG < 41bp 1 0.308226441611316 1 0.44626447558403 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57254661 chr16:57254647 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_33445 0 0 1 0 1 RSPRY1 chr16:57254644 3'AG 57254644 Downstream 4bp
chr6 110533353 110533353 1 + T C SKCM 110533371 + 110533351 110533391 41 ACTATCAAGGCAGGTCCTATCTTCACATACCTCAGGATGTT ACCATCAAGGCAGGTCCTATCTTCACATACCTCAGGATGTT < 41bp 1 0.720187352930937 1 0.576566576957703 experiment 0.559625294138126 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDC40 ENSG00000168438 CDS Human protein_coding chr6:110533371 chr6:110533353 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_33446 0 0 1 0 1 CDC40 chr6:110533336 3'AG 110533336 Downstream 18bp
chr7 5643510 5643510 1 + C T SKCM 5643505 + 5643485 5643525 41 CTGGGACAGGGGACTCAGAGCTCTTCCTCATGAAGCTCATC CTGGGACAGGGGACTCAGAGCTCTTTCTCATGAAGCTCATC < 41bp 1 0.153747128122535 1 0.161102563142776 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5643505 chr7:5643510 synonymous SNV . 0 26 hm5C_associated_SNPs_33447 0 0 1 0 1 FSCN1 chr7:5643494 3'AG 5643494 Downstream 17bp
chr8 98657030 98657030 1 + C T SKCM 98657015 + 98656995 98657035 41 CAAGCGGGAGGAGGCGGCGGCCGTGCCGGCCGCGGCCCCCG CAAGCGGGAGGAGGCGGCGGCCGTGCCGGCCGCGGTCCCCG < 41bp 1 0.507213937784835 1 0.457345247268677 experiment 0.985572124430329 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98657015 chr8:98657030 nonsynonymous SNV 0.011 0 36 hm5C_associated_SNPs_33448 0 0 1 0 1 MTDH chr8:98657115 5'GT 98657115 Upstream 86bp
chr8 98657030 98657030 1 + C T SKCM 98657016 + 98656996 98657036 41 AAGCGGGAGGAGGCGGCGGCCGTGCCGGCCGCGGCCCCCGA AAGCGGGAGGAGGCGGCGGCCGTGCCGGCCGCGGTCCCCGA < 41bp 1 0.763210277144228 1 0.824027061462402 experiment 0.473579445711544 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98657016 chr8:98657030 nonsynonymous SNV 0.011 0 35 hm5C_associated_SNPs_33449 0 0 1 0 1 MTDH chr8:98657115 5'GT 98657115 Upstream 86bp
chr8 98657030 98657030 1 + C T SKCM 98657027 + 98657007 98657047 41 GGCGGCGGCCGTGCCGGCCGCGGCCCCCGACGACCTGGCCT GGCGGCGGCCGTGCCGGCCGCGGTCCCCGACGACCTGGCCT < 41bp 1 0.605606804054533 1 0.667428374290466 experiment 0.788786391890934 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98657027 chr8:98657030 nonsynonymous SNV 0.011 0 24 hm5C_associated_SNPs_33450 0 0 1 0 1 MTDH chr8:98657115 5'GT 98657115 Upstream 86bp
chr1 155028619 155028619 1 + C T SKCM 155028630 + 155028610 155028650 41 CAGCGTGACCTGGTGGAGATCAGCCCAAACCCAGCTGTCAC CAGCGTGACTTGGTGGAGATCAGCCCAAACCCAGCTGTCAC < 41bp 1 0.573378163232893 1 0.706009924411774 experiment 0.853243673534215 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155028630 chr1:155028619 synonymous SNV . 0 10 hm5C_associated_SNPs_33451 0 0 1 0 1 ADAM15 chr1:155028556 3'AG 155028556 Downstream 64bp
chr9 71842716 71842716 1 + C T SKCM 71842734 + 71842714 71842754 41 CTCCAGAGGAGAGACGTCATCAGTATTCTGATTATGATTAT CTTCAGAGGAGAGACGTCATCAGTATTCTGATTATGATTAT < 41bp 1 0.646010645709345 1 0.371872782707214 experiment 0.707978708581311 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TJP2 ENSG00000119139 CDS Human protein_coding chr9:71842734 chr9:71842716 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_33453 0 0 1 0 2 TJP2 chr9:71842681 3'AG 71842681 Downstream 36bp
chr9 71842716 71842716 1 + C T SKCM 71842734 + 71842714 71842754 41 CTCCAGAGGAGAGACGTCATCAGTATTCTGATTATGATTAT CTTCAGAGGAGAGACGTCATCAGTATTCTGATTATGATTAT < 41bp 1 0.646010645709345 1 0.371872782707214 experiment 0.707978708581311 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TJP2 ENSG00000119139 CDS Human protein_coding chr9:71842734 chr9:71842716 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_33453 0 0 1 0 2 TJP2 chr9:71842789 5'GT 71842789 Upstream 74bp
chr3 58112447 58112447 1 + G A SKCM 58112439 + 58112419 58112459 41 TGCTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTA TGCTGAGTACATTCCTTTCGCACCGGGGAATTACGATGTTA < 41bp 1 0.438851602434311 1 0.0843372941017151 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112439 chr3:58112447 nonsynonymous SNV 0.966 2 29 hm5C_associated_SNPs_33454 0 0 1 0 1 FLNB chr3:58112489 5'GT 58112489 Upstream 43bp
chr3 58112447 58112447 1 + G A SKCM 58112441 + 58112421 58112461 41 CTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAAT CTGAGTACATTCCTTTCGCACCGGGGAATTACGATGTTAAT < 41bp 1 0.193858398250084 1 0.329795718193054 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112441 chr3:58112447 nonsynonymous SNV 0.966 2 27 hm5C_associated_SNPs_33455 0 0 1 0 1 FLNB chr3:58112489 5'GT 58112489 Upstream 43bp
chr3 58112447 58112447 1 + G A SKCM 58112442 + 58112422 58112462 41 TGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAATA TGAGTACATTCCTTTCGCACCGGGGAATTACGATGTTAATA < 41bp 1 0.381531526812465 1 0.874459862709045 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112442 chr3:58112447 nonsynonymous SNV 0.966 2 26 hm5C_associated_SNPs_33456 0 0 1 0 1 FLNB chr3:58112489 5'GT 58112489 Upstream 43bp
chr12 57600306 57600306 1 + C T SKCM 57600323 + 57600303 57600343 41 AGCCTGTTCCCCGGCCACCCCCATTCGGCTTACGAGCAGGC AGCTTGTTCCCCGGCCACCCCCATTCGGCTTACGAGCAGGC < 41bp 1 0.0166511387567145 1 0.111043572425842 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57600323 chr12:57600306 synonymous SNV . 0 4 hm5C_associated_SNPs_33457 0 0 1 0 1 LRP1 chr12:57600256 3'AG 57600256 Downstream 51bp
chr4 79440572 79440572 1 + T A SKCM 79440588 + 79440568 79440608 41 GGCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT GGCCACCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT < 41bp 1 0.188479131873407 1 0.507776319980621 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440588 chr4:79440572 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_33459 0 0 0 0 2 FRAS1 chr4:79440485 3'AG 79440485 Downstream 88bp
chr4 79440572 79440572 1 + T A SKCM 79440588 + 79440568 79440608 41 GGCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT GGCCACCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT < 41bp 1 0.188479131873407 1 0.507776319980621 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440588 chr4:79440572 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_33459 0 0 0 0 2 FRAS1 chr4:79440635 5'GT 79440635 Upstream 64bp
chr4 79440572 79440572 1 + T A SKCM 79440589 + 79440569 79440609 41 GCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT GCCACCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT < 41bp 1 0.427895860166925 1 0.65088278055191 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440589 chr4:79440572 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_33460 0 0 0 0 2 FRAS1 chr4:79440485 3'AG 79440485 Downstream 88bp
chr4 79440572 79440572 1 + T A SKCM 79440589 + 79440569 79440609 41 GCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT GCCACCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT < 41bp 1 0.427895860166925 1 0.65088278055191 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440589 chr4:79440572 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_33460 0 0 0 0 2 FRAS1 chr4:79440635 5'GT 79440635 Upstream 64bp
chr22 42262864 42262864 1 + G C SKCM 42262872 + 42262852 42262892 41 AGTAATCAAGTGGGAGAGTTCCCTGACTTGTTTTCAGAACA AGTAATCAAGTGCGAGAGTTCCCTGACTTGTTTTCAGAACA < 41bp 1 0.0739154388945082 1 0.337266564369202 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42262872 chr22:42262864 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_33461 0 0 1 0 1 SREBF2 chr22:42262835 3'AG 42262835 Downstream 30bp
chr2 113950937 113950937 1 + C T SKCM 113950934 + 113950914 113950954 41 CACCATTGCAATCCGGGGATCTTCCCCTCAGTAGGTAGGGA CACCATTGCAATCCGGGGATCTTTCCCTCAGTAGGTAGGGA < 41bp 1 0.0182506401623652 1 0.10231751203537 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950934 chr2:113950937 synonymous SNV . 0 24 hm5C_associated_SNPs_33463 0 0 0 0 1 PSD4 chr2:113950947 5'GT 113950947 Upstream 11bp
chrX 99920248 99920248 1 + C T SKCM 99920250 + 99920230 99920270 41 ATCTTGGCAGACATAGATCCCCCCAAGATCCGCTGTCCCCA ATCTTGGCAGACATAGATTCCCCCAAGATCCGCTGTCCCCA < 41bp 1 0.646844261039931 1 0.250901103019714 experiment 0.706311477920139 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99920250 chrX:99920248 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_33464 0 0 0 0 1 SRPX2 chrX:99920240 3'AG 99920240 Downstream 9bp
chr2 86360313 86360313 1 + C T SKCM 86360303 + 86360283 86360323 41 TTTTTGCCTTCATCACAGTTCCAAGTTCTTCGATTTGATTT TTTTTGCCTTCATCACAGTTCCAAGTTCTTTGATTTGATTT < 41bp 1 0.0792890300817248 1 0.068117618560791 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86360303 chr2:86360313 synonymous SNV . 0 31 hm5C_associated_SNPs_33466 0 0 1 0 2 PTCD3 chr2:86360301 3'AG 86360301 Downstream 13bp
chr2 86360313 86360313 1 + C T SKCM 86360303 + 86360283 86360323 41 TTTTTGCCTTCATCACAGTTCCAAGTTCTTCGATTTGATTT TTTTTGCCTTCATCACAGTTCCAAGTTCTTTGATTTGATTT < 41bp 1 0.0792890300817248 1 0.068117618560791 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86360303 chr2:86360313 synonymous SNV . 0 31 hm5C_associated_SNPs_33466 0 0 1 0 2 PTCD3 chr2:86360379 5'GT 86360379 Upstream 67bp
chr14 104124113 104124113 1 + C T SKCM 104124107 + 104124087 104124127 41 AAATATGATGACGACATTTCCCCATCCGTGAGTGGCTCTGT AAATATGATGACGACATTTCCCCATCTGTGAGTGGCTCTGT < 41bp 1 0.13997720835143 1 0.196434140205383 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104124107 chr14:104124113 synonymous SNV . 0 27 hm5C_associated_SNPs_33467 0 0 1 0 1 KLC1 chr14:104124113 5'GT 104124113 Upstream 1bp
chr14 104124113 104124113 1 + C T SKCM 104124108 + 104124088 104124128 41 AATATGATGACGACATTTCCCCATCCGTGAGTGGCTCTGTA AATATGATGACGACATTTCCCCATCTGTGAGTGGCTCTGTA < 41bp 1 0.0563167178923948 1 0.160497933626175 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104124108 chr14:104124113 synonymous SNV . 0 26 hm5C_associated_SNPs_33468 0 0 1 0 1 KLC1 chr14:104124113 5'GT 104124113 Upstream 1bp
chr14 104124113 104124113 1 + C T SKCM 104124112 + 104124092 104124132 41 TGATGACGACATTTCCCCATCCGTGAGTGGCTCTGTAGCAA TGATGACGACATTTCCCCATCTGTGAGTGGCTCTGTAGCAA < 41bp 1 0.332079554799455 1 0.159609407186508 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104124112 chr14:104124113 synonymous SNV . 0 22 hm5C_associated_SNPs_33469 0 0 1 0 1 KLC1 chr14:104124113 5'GT 104124113 Upstream 1bp
chr15 69714755 69714755 1 + C T SKCM 69714749 + 69714729 69714769 41 GTCAGAAAAGAGAAGCTATGCCCAATCCAAAGACTTCTTCT GTCAGAAAAGAGAAGCTATGCCCAATTCAAAGACTTCTTCT < 41bp 1 0.54138800453636 1 0.117835640907288 experiment 0.91722399092728 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69714749 chr15:69714755 nonsynonymous SNV 0.914 1 27 hm5C_associated_SNPs_33470 0 0 1 0 2 KIF23 chr15:69714665 3'AG 69714665 Downstream 91bp
chr15 69714755 69714755 1 + C T SKCM 69714749 + 69714729 69714769 41 GTCAGAAAAGAGAAGCTATGCCCAATCCAAAGACTTCTTCT GTCAGAAAAGAGAAGCTATGCCCAATTCAAAGACTTCTTCT < 41bp 1 0.54138800453636 1 0.117835640907288 experiment 0.91722399092728 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69714749 chr15:69714755 nonsynonymous SNV 0.914 1 27 hm5C_associated_SNPs_33470 0 0 1 0 2 KIF23 chr15:69714774 5'GT 69714774 Upstream 20bp
chr7 142459787 142459787 1 + C T SKCM 142459768 + 142459748 142459788 41 CATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGCCC CATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGCTC < 41bp 1 0.748811567640378 1 0.715499818325043 experiment 0.502376864719243 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459768 chr7:142459787 synonymous SNV . 0 40 hm5C_associated_SNPs_33474 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 92bp
chr7 142459787 142459787 1 + C T SKCM 142459770 + 142459750 142459790 41 TGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGC TGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGCTCGC < 41bp 1 0.325235756629286 1 0.112100124359131 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459770 chr7:142459787 synonymous SNV . 0 38 hm5C_associated_SNPs_33475 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 92bp
chr7 142459787 142459787 1 + C T SKCM 142459774 + 142459754 142459794 41 AATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGCGTGT AATCAAGCTCTCCTCACGTGCAGTAATCAACGCTCGCGTGT < 41bp 1 0.677239482478924 1 0.0662745535373688 experiment 0.645521035042151 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459774 chr7:142459787 synonymous SNV . 0 34 hm5C_associated_SNPs_33476 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 92bp
chr7 142459787 142459787 1 + C T SKCM 142459781 + 142459761 142459801 41 CTCTCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCAT CTCTCCTCACGTGCAGTAATCAACGCTCGCGTGTCCACCAT < 41bp 1 0.736493617357506 1 0.868516445159912 experiment 0.527012765284987 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459781 chr7:142459787 synonymous SNV . 0 27 hm5C_associated_SNPs_33477 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 92bp
chr7 142459787 142459787 1 + C T SKCM 142459784 + 142459764 142459804 41 TCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTC TCCTCACGTGCAGTAATCAACGCTCGCGTGTCCACCATCTC < 41bp 1 0.43170708782518 1 0.104264438152313 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459784 chr7:142459787 synonymous SNV . 0 24 hm5C_associated_SNPs_33478 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 92bp
chr7 142459787 142459787 1 + C T SKCM 142459786 + 142459766 142459806 41 CTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTC CTCACGTGCAGTAATCAACGCTCGCGTGTCCACCATCTCTC < 41bp 1 0.69674803209076 1 0.0709291398525238 experiment 0.60650393581848 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459786 chr7:142459787 synonymous SNV . 0 22 hm5C_associated_SNPs_33479 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 92bp
chr7 142459787 142459787 1 + C T SKCM 142459788 + 142459768 142459808 41 CACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCTG CACGTGCAGTAATCAACGCTCGCGTGTCCACCATCTCTCTG < 41bp 1 0.787787481538214 1 0.0447664558887482 experiment 0.424425036923572 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459788 chr7:142459787 synonymous SNV . 0 20 hm5C_associated_SNPs_33480 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 92bp
chr7 142459787 142459787 1 + C T SKCM 142459790 + 142459770 142459810 41 CGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCC CGTGCAGTAATCAACGCTCGCGTGTCCACCATCTCTCTGCC < 41bp 1 0.519972433301905 1 0.0967903137207031 experiment 0.96005513339619 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459790 chr7:142459787 synonymous SNV . 0 18 hm5C_associated_SNPs_33481 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 92bp
chr7 142459787 142459787 1 + C T SKCM 142459795 + 142459775 142459815 41 AGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCG AGTAATCAACGCTCGCGTGTCCACCATCTCTCTGCCCACCG < 41bp 1 0.354338248789937 1 0.0985296964645386 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459795 chr7:142459787 synonymous SNV . 0 13 hm5C_associated_SNPs_33482 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 92bp
chr7 142459787 142459787 1 + C T SKCM 142459798 + 142459778 142459818 41 AATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCC AATCAACGCTCGCGTGTCCACCATCTCTCTGCCCACCGCCC < 41bp 1 0.194633162821578 1 0.0337187647819519 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459798 chr7:142459787 synonymous SNV . 0 10 hm5C_associated_SNPs_33483 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 92bp
chr7 142459787 142459787 1 + C T SKCM 142459799 + 142459779 142459819 41 ATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCC ATCAACGCTCGCGTGTCCACCATCTCTCTGCCCACCGCCCC < 41bp 1 0.428987677546738 1 0.206883579492569 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459799 chr7:142459787 synonymous SNV . 0 9 hm5C_associated_SNPs_33484 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 92bp
chr7 142459787 142459787 1 + C T SKCM 142459802 + 142459782 142459822 41 AACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCC AACGCTCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCC < 41bp 1 0.450792152395823 1 0.341342955827713 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459802 chr7:142459787 synonymous SNV . 0 6 hm5C_associated_SNPs_33485 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 92bp
chr7 142459787 142459787 1 + C T SKCM 142459804 + 142459784 142459824 41 CGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAG CGCTCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAG < 41bp 1 0.656097164498472 1 0.392426759004593 experiment 0.687805671003056 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459804 chr7:142459787 synonymous SNV . 0 4 hm5C_associated_SNPs_33486 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 92bp
chr7 142459787 142459787 1 + C T SKCM 142459806 + 142459786 142459826 41 CCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCC CTCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCC < 41bp 1 0.585326582595256 1 0.239651262760162 experiment 0.829346834809487 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459806 chr7:142459787 synonymous SNV . 0 2 hm5C_associated_SNPs_33487 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 92bp
chr6 24423265 24423265 1 + C T SKCM 24423252 + 24423232 24423272 41 TGCTTTCATTCCTTGGACGACAGCTAGAAGCTCCATTGCCT TGCTTTCATTCCTTGGACGACAGCTAGAAGCTCTATTGCCT < 41bp 1 0.470769500236495 1 0.0627591907978058 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRS2 ENSG00000124532 CDS Human protein_coding chr6:24423252 chr6:24423265 nonsynonymous SNV 0.729 3 34 hm5C_associated_SNPs_33489 0 0 1 0 1 MRS2 chr6:24423278 5'GT 24423278 Upstream 14bp
chr7 106797452 106797452 1 + C T SKCM 106797463 + 106797443 106797483 41 TTCTTTTTTCATTGTAGAATCTGGAGAAGTGAAAATTACTA TTCTTTTTTTATTGTAGAATCTGGAGAAGTGAAAATTACTA < 41bp 1 0.778646909459647 1 0.729537129402161 experiment 0.442706181080706 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106797463 chr7:106797452 synonymous SNV . 0 10 hm5C_associated_SNPs_33490 0 0 1 0 2 PRKAR2B chr7:106797429 3'AG 106797429 Downstream 24bp
chr7 106797452 106797452 1 + C T SKCM 106797463 + 106797443 106797483 41 TTCTTTTTTCATTGTAGAATCTGGAGAAGTGAAAATTACTA TTCTTTTTTTATTGTAGAATCTGGAGAAGTGAAAATTACTA < 41bp 1 0.778646909459647 1 0.729537129402161 experiment 0.442706181080706 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106797463 chr7:106797452 synonymous SNV . 0 10 hm5C_associated_SNPs_33490 0 0 1 0 2 PRKAR2B chr7:106797494 5'GT 106797494 Upstream 43bp
chr6 31928246 31928246 1 + C T SKCM 31928230 + 31928210 31928250 41 TCTTGCTGGAGAACACAAATCTCTCGGCTACAACCTCCTTG TCTTGCTGGAGAACACAAATCTCTCGGCTACAACCTTCTTG < 41bp 1 0.311251112631504 1 0.126180171966553 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31928230 chr6:31928246 nonsynonymous SNV 0.984 4 37 hm5C_associated_SNPs_33491 0 0 1 0 2 SKIV2L chr6:31928209 3'AG 31928209 Downstream 38bp
chr6 31928246 31928246 1 + C T SKCM 31928230 + 31928210 31928250 41 TCTTGCTGGAGAACACAAATCTCTCGGCTACAACCTCCTTG TCTTGCTGGAGAACACAAATCTCTCGGCTACAACCTTCTTG < 41bp 1 0.311251112631504 1 0.126180171966553 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31928230 chr6:31928246 nonsynonymous SNV 0.984 4 37 hm5C_associated_SNPs_33491 0 0 1 0 2 SKIV2L chr6:31928323 5'GT 31928323 Upstream 78bp
chr4 79440574 79440574 1 + C T SKCM 79440588 + 79440568 79440608 41 GGCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT GGCCTCTTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT < 41bp 1 0.166767739112437 1 0.572327017784119 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440588 chr4:79440574 synonymous SNV . 0 7 hm5C_associated_SNPs_33492 0 0 0 0 2 FRAS1 chr4:79440485 3'AG 79440485 Downstream 90bp
chr4 79440574 79440574 1 + C T SKCM 79440588 + 79440568 79440608 41 GGCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT GGCCTCTTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT < 41bp 1 0.166767739112437 1 0.572327017784119 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440588 chr4:79440574 synonymous SNV . 0 7 hm5C_associated_SNPs_33492 0 0 0 0 2 FRAS1 chr4:79440635 5'GT 79440635 Upstream 62bp
chr4 79440574 79440574 1 + C T SKCM 79440589 + 79440569 79440609 41 GCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT GCCTCTTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT < 41bp 1 0.45651790132914 1 0.500733613967896 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440589 chr4:79440574 synonymous SNV . 0 6 hm5C_associated_SNPs_33493 0 0 0 0 2 FRAS1 chr4:79440485 3'AG 79440485 Downstream 90bp
chr4 79440574 79440574 1 + C T SKCM 79440589 + 79440569 79440609 41 GCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT GCCTCTTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT < 41bp 1 0.45651790132914 1 0.500733613967896 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440589 chr4:79440574 synonymous SNV . 0 6 hm5C_associated_SNPs_33493 0 0 0 0 2 FRAS1 chr4:79440635 5'GT 79440635 Upstream 62bp
chr16 67914531 67914531 1 + C T SKCM 67914550 + 67914530 67914570 41 CCCCTAGCCGCACTCGTTCCCCTGATGTCATCTCCTCAGCT CTCCTAGCCGCACTCGTTCCCCTGATGTCATCTCCTCAGCT < 41bp 1 0.420038310425249 1 0.136810094118118 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914550 chr16:67914531 synonymous SNV . 0 2 hm5C_associated_SNPs_33494 0 0 0 0 1 EDC4 chr16:67914460 3'AG 67914460 Downstream 72bp
chr22 18570761 18570761 1 + C T SKCM 18570741 + 18570721 18570761 41 CTCCCTCTGCCCTGCAGCTTCCCCTTCCTCCCTGCACTTCC CTCCCTCTGCCCTGCAGCTTCCCCTTCCTCCCTGCACTTCT < 41bp 1 0.178349933416757 1 0.0340075790882111 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PEX26 ENSG00000215193 CDS Human protein_coding chr22:18570741 chr22:18570761 nonsynonymous SNV 0.974 2 41 hm5C_associated_SNPs_33495 0 0 1 0 1 PEX26 chr22:18570738 3'AG 18570738 Downstream 24bp
chr22 29678492 29678492 1 + C G SKCM 29678503 + 29678483 29678523 41 CCCAGGTACCTGGGAGCTACCCCATGCAGCCAGTCACTGCA CCCAGGTACGTGGGAGCTACCCCATGCAGCCAGTCACTGCA < 41bp 1 0.411487189483985 1 0.417688965797424 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29678503 chr22:29678492 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_33496 0 0 1 0 1 EWSR1 chr22:29678546 5'GT 29678546 Upstream 55bp
chr12 53516963 53516963 1 + C T SKCM 53516960 + 53516940 53516980 41 TTCTGCTTCGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT TTCTGCTTCGTCCTGGGGTTCTTTTATCCCGTCATGCTGAT < 41bp 1 0.0597116654744971 1 0.0297841429710388 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53516960 chr12:53516963 synonymous SNV . 0 24 hm5C_associated_SNPs_33503 0 0 0 0 2 SOAT2 chr12:53516865 3'AG 53516865 Downstream 99bp
chr12 53516963 53516963 1 + C T SKCM 53516960 + 53516940 53516980 41 TTCTGCTTCGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT TTCTGCTTCGTCCTGGGGTTCTTTTATCCCGTCATGCTGAT < 41bp 1 0.0597116654744971 1 0.0297841429710388 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53516960 chr12:53516963 synonymous SNV . 0 24 hm5C_associated_SNPs_33503 0 0 0 0 2 SOAT2 chr12:53517000 5'GT 53517000 Upstream 38bp
chr2 27900715 27900715 1 + G A SKCM 27900703 + 27900683 27900723 41 TGTCCCGGAAGAAACTTCACCTGAGAACTTTTGAACTGAGG TGTCCCGGAAGAAACTTCACCTGAGAACTTTTAAACTGAGG < 41bp 1 0.252218761035658 1 0.304866790771484 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27900703 chr2:27900715 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_33504 0 0 1 0 1 SLC4A1AP chr2:27900791 5'GT 27900791 Upstream 77bp
chr1 11807497 11807497 1 + G A SKCM 11807514 + 11807494 11807534 41 CAGGGGCTGCATTGTATTCTCAGGCTCCTATGCCTGGGCCA CAGAGGCTGCATTGTATTCTCAGGCTCCTATGCCTGGGCCA < 41bp 1 0.749019964923077 1 0.427184283733368 experiment 0.501960070153845 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGTRAP ENSG00000177674 CDS Human protein_coding chr1:11807514 chr1:11807497 stopgain 0.798 3 4 hm5C_associated_SNPs_33505 0 0 1 0 1 AGTRAP chr1:11807497 3'AG 11807497 Downstream 1bp
chr1 36645654 36645654 1 + C T SKCM 36645659 + 36645639 36645679 41 AAGCTGTGGTGCAGTCCCCGCAGGTCACAGGTAGATCTCCT AAGCTGTGGTGCAGTTCCCGCAGGTCACAGGTAGATCTCCT < 41bp 1 0.374530350462306 1 0.91326630115509 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP7D1 ENSG00000116871 CDS Human protein_coding chr1:36645659 chr1:36645654 nonsynonymous SNV 0.974 3 16 hm5C_associated_SNPs_33506 0 0 1 0 1 MAP7D1 chr1:36645668 5'GT 36645668 Upstream 15bp
chr2 238976788 238976788 1 + C T SKCM 238976802 + 238976782 238976822 41 AATCTTCACTTCCGGGGGCACTGAGGTAAAGCTTCTGAACA AATCTTTACTTCCGGGGGCACTGAGGTAAAGCTTCTGAACA < 41bp 1 0.363037884283674 1 0.358593165874481 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCLY ENSG00000132330 CDS Human protein_coding chr2:238976802 chr2:238976788 synonymous SNV . 0 7 hm5C_associated_SNPs_33512 0 0 1 0 2 SCLY chr2:238976706 3'AG 238976706 Downstream 83bp
chr2 238976788 238976788 1 + C T SKCM 238976802 + 238976782 238976822 41 AATCTTCACTTCCGGGGGCACTGAGGTAAAGCTTCTGAACA AATCTTTACTTCCGGGGGCACTGAGGTAAAGCTTCTGAACA < 41bp 1 0.363037884283674 1 0.358593165874481 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCLY ENSG00000132330 CDS Human protein_coding chr2:238976802 chr2:238976788 synonymous SNV . 0 7 hm5C_associated_SNPs_33512 0 0 1 0 2 SCLY chr2:238976806 5'GT 238976806 Upstream 19bp
chr1 10689629 10689629 1 + C T SKCM 10689614 + 10689594 10689634 41 GTTCCCTCCATCCCCATCAGCCCCGAAGATCCCCTCCTGGC GTTCCCTCCATCCCCATCAGCCCCGAAGATCCCCTTCTGGC < 41bp 1 0.260288312746537 1 0.0445155203342438 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PEX14 ENSG00000142655 CDS Human protein_coding chr1:10689614 chr1:10689629 nonsynonymous SNV 0.996 4 36 hm5C_associated_SNPs_33513 0 0 1 0 1 PEX14 chr1:10689588 3'AG 10689588 Downstream 42bp
chrX 48457753 48457753 1 + G A SKCM 48457763 + 48457743 48457783 41 CTTTGAGGATGATCCTCGGGCCCTGGGGGCCCGTGGGCACC CTTTGAGGATAATCCTCGGGCCCTGGGGGCCCGTGGGCACC < 41bp 1 0.147303708737304 1 0.0531412065029144 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457763 chrX:48457753 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_33514 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 98bp
chrX 48457753 48457753 1 + G A SKCM 48457772 + 48457752 48457792 41 TGATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTG TAATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTG < 41bp 1 0.29467468506065 1 0.0485102534294128 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457772 chrX:48457753 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_33515 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 98bp
chrX 48457753 48457753 1 + G A SKCM 48457773 + 48457753 48457793 41 GATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGT AATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGT < 41bp 1 0.287817113596433 1 0.344213902950287 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457773 chrX:48457753 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_33516 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 98bp
chr14 60591906 60591906 1 + C T SKCM 60591886 + 60591866 60591906 41 GGTCATATATTGAGAGTTTACGGTGGTGTTTTGCCTTGGTC GGTCATATATTGAGAGTTTACGGTGGTGTTTTGCCTTGGTT < 41bp 1 0.733185010770407 1 0.599945545196533 experiment 0.533629978459186 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60591886 chr14:60591906 nonsynonymous SNV 0.988 4 41 hm5C_associated_SNPs_33517 0 0 1 0 1 PCNX4 chr14:60591969 5'GT 60591969 Upstream 64bp
chr14 24568320 24568320 1 + C A SKCM 24568331 + 24568311 24568351 41 GTGCCCGACCAGCGGGAGATCATCTCCTTCGGCAGCGGCTA GTGCCCGACAAGCGGGAGATCATCTCCTTCGGCAGCGGCTA < 41bp 1 0.262801512692618 1 0.128296136856079 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCK2 ENSG00000100889 CDS Human protein_coding chr14:24568331 chr14:24568320 nonsynonymous SNV 0.997 0 10 hm5C_associated_SNPs_33519 0 0 1 0 1 PCK2 chr14:24568258 3'AG 24568258 Downstream 63bp
chr1 109772144 109772144 1 + C T SKCM 109772124 + 109772104 109772144 41 GGAGCGGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCC GGAGCGGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCT < 41bp 1 0.552267506945526 1 0.836808681488037 experiment 0.895464986108949 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SARS ENSG00000031698 CDS Human protein_coding chr1:109772124 chr1:109772144 stopgain 0.959 1 41 hm5C_associated_SNPs_33527 0 0 1 0 1 SARS chr1:109772194 5'GT 109772194 Upstream 51bp
chr1 109772144 109772144 1 + C T SKCM 109772129 + 109772109 109772149 41 GGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCCGAGAG GGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCTGAGAG < 41bp 1 0.526282068638779 1 0.374760150909424 experiment 0.947435862722441 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SARS ENSG00000031698 CDS Human protein_coding chr1:109772129 chr1:109772144 stopgain 0.959 1 36 hm5C_associated_SNPs_33528 0 0 1 0 1 SARS chr1:109772194 5'GT 109772194 Upstream 51bp
chr1 109772143 109772143 1 + C T SKCM 109772124 + 109772104 109772144 41 GGAGCGGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCC GGAGCGGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTTC < 41bp 1 0.607867479961376 1 0.782293200492859 experiment 0.784265040077248 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SARS ENSG00000031698 CDS Human protein_coding chr1:109772124 chr1:109772143 synonymous SNV . 0 40 hm5C_associated_SNPs_33529 0 0 1 0 1 SARS chr1:109772194 5'GT 109772194 Upstream 52bp
chr1 109772143 109772143 1 + C T SKCM 109772129 + 109772109 109772149 41 GGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCCGAGAG GGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTTCGAGAG < 41bp 1 0.579760372883839 1 0.327895641326904 experiment 0.840479254232322 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SARS ENSG00000031698 CDS Human protein_coding chr1:109772129 chr1:109772143 synonymous SNV . 0 35 hm5C_associated_SNPs_33530 0 0 1 0 1 SARS chr1:109772194 5'GT 109772194 Upstream 52bp
chr17 7402801 7402801 1 + C T SKCM 7402808 + 7402788 7402828 41 AGAGAGACGTCTTCCTGGAGCGGGTGTGTGGTCCAAATGGA AGAGAGACGTCTTTCTGGAGCGGGTGTGTGGTCCAAATGGA < 41bp 1 0.548256963623767 1 0.54496693611145 experiment 0.903486072752467 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2A ENSG00000181222 CDS Human protein_coding chr17:7402808 chr17:7402801 synonymous SNV . 0 14 hm5C_associated_SNPs_33531 0 0 0 0 1 POLR2A chr17:7402810 5'GT 7402810 Upstream 10bp
chr1 207510105 207510105 1 + A G SKCM 207510119 + 207510099 207510139 41 AACTACAGAAGTCTCACCAACTTCTCAGAAAACCACCACAA AACTACGGAAGTCTCACCAACTTCTCAGAAAACCACCACAA < 41bp 1 0.306951407532421 1 0.809977650642395 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CD55 ENSG00000196352 CDS Human protein_coding chr1:207510119 chr1:207510105 synonymous SNV . 0 7 hm5C_associated_SNPs_33532 0 0 1 0 2 CD55 chr1:207510038 3'AG 207510038 Downstream 68bp
chr1 207510105 207510105 1 + A G SKCM 207510119 + 207510099 207510139 41 AACTACAGAAGTCTCACCAACTTCTCAGAAAACCACCACAA AACTACGGAAGTCTCACCAACTTCTCAGAAAACCACCACAA < 41bp 1 0.306951407532421 1 0.809977650642395 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CD55 ENSG00000196352 CDS Human protein_coding chr1:207510119 chr1:207510105 synonymous SNV . 0 7 hm5C_associated_SNPs_33532 0 0 1 0 2 CD55 chr1:207510163 5'GT 207510163 Upstream 59bp
chr17 4621234 4621234 1 + C T SKCM 4621233 + 4621213 4621253 41 GCAGTTCGCCCCGGAGAAACCCGGCCCCCAGCCTTCAGCCG GCAGTTCGCCCCGGAGAAACCTGGCCCCCAGCCTTCAGCCG < 41bp 1 0.781658069667567 1 0.566644251346588 experiment 0.436683860664867 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4621233 chr17:4621234 synonymous SNV . 0 22 hm5C_associated_SNPs_33533 0 0 0 0 2 ARRB2 chr17:4621183 3'AG 4621183 Downstream 52bp
chr17 4621234 4621234 1 + C T SKCM 4621233 + 4621213 4621253 41 GCAGTTCGCCCCGGAGAAACCCGGCCCCCAGCCTTCAGCCG GCAGTTCGCCCCGGAGAAACCTGGCCCCCAGCCTTCAGCCG < 41bp 1 0.781658069667567 1 0.566644251346588 experiment 0.436683860664867 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4621233 chr17:4621234 synonymous SNV . 0 22 hm5C_associated_SNPs_33533 0 0 0 0 2 ARRB2 chr17:4621318 5'GT 4621318 Upstream 85bp
chr16 30939897 30939897 1 + C T SKCM 30939906 + 30939886 30939926 41 GGTTCTGAATCCGAGCCAGGCTTTCTCATCCTGCCACCCTG GGTTCTGAATCTGAGCCAGGCTTTCTCATCCTGCCACCCTG < 41bp 1 0.0568085114802587 1 0.0305556952953339 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30939906 chr16:30939897 nonsynonymous SNV 0.998 1 12 hm5C_associated_SNPs_33534 0 0 1 0 2 FBXL19 chr16:30939949 5'GT 30939949 Upstream 53bp
chr16 30939897 30939897 1 + C T SKCM 30939906 + 30939886 30939926 41 GGTTCTGAATCCGAGCCAGGCTTTCTCATCCTGCCACCCTG GGTTCTGAATCTGAGCCAGGCTTTCTCATCCTGCCACCCTG < 41bp 1 0.0568085114802587 1 0.0305556952953339 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30939906 chr16:30939897 nonsynonymous SNV 0.998 1 12 hm5C_associated_SNPs_33534 0 0 1 0 2 FBXL19 chr16:30939951 5'GT 30939951 Upstream 55bp
chr15 41854889 41854889 1 + C T SKCM 41854884 + 41854864 41854904 41 AACTACGAAGATCGGGGGACCCGCTCCCTCTCCATCTGTTT AACTACGAAGATCGGGGGACCCGCTTCCTCTCCATCTGTTT < 41bp 1 0.0759334975564891 1 0.0643606185913086 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41854884 chr15:41854889 nonsynonymous SNV 0.994 0 26 hm5C_associated_SNPs_33537 0 0 0 0 1 TYRO3 chr15:41854916 5'GT 41854916 Upstream 28bp
chr15 41854889 41854889 1 + C T SKCM 41854885 + 41854865 41854905 41 ACTACGAAGATCGGGGGACCCGCTCCCTCTCCATCTGTTTT ACTACGAAGATCGGGGGACCCGCTTCCTCTCCATCTGTTTT < 41bp 1 0.210447755992063 1 0.0775572955608368 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41854885 chr15:41854889 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_33538 0 0 0 0 1 TYRO3 chr15:41854916 5'GT 41854916 Upstream 28bp
chr16 69951744 69951744 1 + C T SKCM 69951752 + 69951732 69951772 41 GCGGAATCAGCTCCAGGGGGCCATGCAGCACTTCAGCCAAA GCGGAATCAGCTTCAGGGGGCCATGCAGCACTTCAGCCAAA < 41bp 1 0.0542983515609979 1 0.0638072192668915 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control WWP2 ENSG00000198373 CDS Human protein_coding chr16:69951752 chr16:69951744 synonymous SNV . 0 13 hm5C_associated_SNPs_33539 0 0 1 0 1 WWP2 chr16:69951786 5'GT 69951786 Upstream 43bp
chr7 142459672 142459672 1 + G A SKCM 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGAGAA < 41bp 1 0.681450045596483 1 0.137529075145721 experiment 0.637099908807034 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459672 nonsynonymous SNV 0.081 4 38 hm5C_associated_SNPs_33540 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 48bp
chr7 142459672 142459672 1 + G A SKCM 142459658 + 142459638 142459678 41 AGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAATGA AGACTGGGAGAGCACAACATCGAAGTCCTGGAGGAGAATGA < 41bp 1 0.732795594953206 1 0.457849860191345 experiment 0.534408810093587 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459658 chr7:142459672 nonsynonymous SNV 0.081 4 35 hm5C_associated_SNPs_33541 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 48bp
chr7 142459672 142459672 1 + G A SKCM 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCACAACATCGAAGTCCTGGAGGAGAATGAGCAGTT < 41bp 1 0.516474075277299 1 0.337943017482758 experiment 0.967051849445403 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459672 nonsynonymous SNV 0.081 4 29 hm5C_associated_SNPs_33542 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 48bp
chr7 142459672 142459672 1 + G A SKCM 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG AAGTCCTGGAGGAGAATGAGCAGTTCATCAATGCAGCCAAG < 41bp 1 0.469578916152705 1 0.193081110715866 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459672 nonsynonymous SNV 0.081 4 13 hm5C_associated_SNPs_33543 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 48bp
chr7 142459672 142459672 1 + G A SKCM 142459685 + 142459665 142459705 41 CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT CTGGAGGAGAATGAGCAGTTCATCAATGCAGCCAAGATCAT < 41bp 1 0.634180048624026 1 0.0486206412315369 experiment 0.731639902751947 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459685 chr7:142459672 nonsynonymous SNV 0.081 4 8 hm5C_associated_SNPs_33544 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 48bp
chr7 142459672 142459672 1 + G A SKCM 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAGGAGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG < 41bp 1 0.638720786378921 1 0.25257283449173 experiment 0.722558427242158 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459672 nonsynonymous SNV 0.081 4 5 hm5C_associated_SNPs_33545 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 48bp
chr5 73989524 73989524 1 + T A SKCM 73989526 + 73989506 73989546 41 ACAGAGTTTGGGGAGCATTACGAGGTAAGTTCCATGCAGTT ACAGAGTTTGGGGAGCATAACGAGGTAAGTTCCATGCAGTT < 41bp 1 0.683207673845458 1 0.84485936164856 experiment 0.633584652309084 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HEXB ENSG00000049860 CDS Human protein_coding chr5:73989526 chr5:73989524 stopgain 0.998 1 19 hm5C_associated_SNPs_33546 0 0 1 1 2 HEXB chr5:73989464 3'AG 73989464 Downstream 61bp
chr5 73989524 73989524 1 + T A SKCM 73989526 + 73989506 73989546 41 ACAGAGTTTGGGGAGCATTACGAGGTAAGTTCCATGCAGTT ACAGAGTTTGGGGAGCATAACGAGGTAAGTTCCATGCAGTT < 41bp 1 0.683207673845458 1 0.84485936164856 experiment 0.633584652309084 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HEXB ENSG00000049860 CDS Human protein_coding chr5:73989526 chr5:73989524 stopgain 0.998 1 19 hm5C_associated_SNPs_33546 0 0 1 1 2 HEXB chr5:73989529 5'GT 73989529 Upstream 6bp
chr1 31811831 31811831 1 + C T SKCM 31811833 + 31811813 31811853 41 GATAGAATAAAAGTATCCCTCTCCATGAAGGTTGTCAATCA GATAGAATAAAAGTATCCTTCTCCATGAAGGTTGTCAATCA < 41bp 1 0.795786256269413 1 0.982711434364319 experiment 0.408427487461174 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZCCHC17 ENSG00000121766 CDS Human protein_coding chr1:31811833 chr1:31811831 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_33549 0 0 1 0 2 ZCCHC17 chr1:31811804 3'AG 31811804 Downstream 28bp
chr1 31811831 31811831 1 + C T SKCM 31811833 + 31811813 31811853 41 GATAGAATAAAAGTATCCCTCTCCATGAAGGTTGTCAATCA GATAGAATAAAAGTATCCTTCTCCATGAAGGTTGTCAATCA < 41bp 1 0.795786256269413 1 0.982711434364319 experiment 0.408427487461174 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZCCHC17 ENSG00000121766 CDS Human protein_coding chr1:31811833 chr1:31811831 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_33549 0 0 1 0 2 ZCCHC17 chr1:31811895 5'GT 31811895 Upstream 65bp
chr1 65871733 65871733 1 + C T SKCM 65871740 + 65871720 65871760 41 CCCCACTCCTCTCCCCAGAACCGACCCAACTACAACGTGAG CCCCACTCCTCTCTCCAGAACCGACCCAACTACAACGTGAG < 41bp 1 0.0565673859599404 1 0.125706195831299 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65871740 chr1:65871733 nonsynonymous SNV 0.918 2 14 hm5C_associated_SNPs_33550 0 0 0 0 1 DNAJC6 chr1:65871816 5'GT 65871816 Upstream 84bp
chr9 133355822 133355822 1 + G A SKCM 133355811 + 133355791 133355831 41 CGTATTGACATCGTGGAGAACCGCTTCATTGGAATGAAGTC CGTATTGACATCGTGGAGAACCGCTTCATTGAAATGAAGTC < 41bp 1 0.117050316328893 1 0.0636813640594482 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ASS1 ENSG00000130707 CDS Human protein_coding chr9:133355811 chr9:133355822 nonsynonymous SNV 0.955 4 32 hm5C_associated_SNPs_33551 0 0 0 0 2 ASS1 chr9:133355772 3'AG 133355772 Downstream 51bp
chr9 133355822 133355822 1 + G A SKCM 133355811 + 133355791 133355831 41 CGTATTGACATCGTGGAGAACCGCTTCATTGGAATGAAGTC CGTATTGACATCGTGGAGAACCGCTTCATTGAAATGAAGTC < 41bp 1 0.117050316328893 1 0.0636813640594482 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ASS1 ENSG00000130707 CDS Human protein_coding chr9:133355811 chr9:133355822 nonsynonymous SNV 0.955 4 32 hm5C_associated_SNPs_33551 0 0 0 0 2 ASS1 chr9:133355836 5'GT 133355836 Upstream 15bp
chr6 31594926 31594926 1 + C T SKCM 31594939 + 31594919 31594959 41 CTACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC CTACCCCTACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC < 41bp 1 0.3032548355445 1 0.10245481133461 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594939 chr6:31594926 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_33554 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 50bp
chr6 31594926 31594926 1 + C T SKCM 31594940 + 31594920 31594960 41 TACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC TACCCCTACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC < 41bp 1 0.270696147187263 1 0.126917362213135 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594940 chr6:31594926 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_33555 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 50bp
chr6 31594926 31594926 1 + C T SKCM 31594941 + 31594921 31594961 41 ACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC ACCCCTACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC < 41bp 1 0.338406111014547 1 0.248966634273529 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594941 chr6:31594926 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_33556 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 50bp
chr6 31594926 31594926 1 + C T SKCM 31594942 + 31594922 31594962 41 CCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCC CCCCTACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCC < 41bp 1 0.584706888463852 1 0.563100576400757 experiment 0.830586223072296 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594942 chr6:31594926 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_33557 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 50bp
chr19 54968019 54968019 1 + C T SKCM 54968028 + 54968008 54968048 41 GAGCTGCAGATCGTGGGCACCTGCCCTGACATCACCAAGCA GAGCTGCAGATTGTGGGCACCTGCCCTGACATCACCAAGCA < 41bp 1 0.263618688287564 1 0.417730629444122 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54968028 chr19:54968019 synonymous SNV . 0 12 hm5C_associated_SNPs_33558 0 0 1 0 1 LENG8 chr19:54968100 5'GT 54968100 Upstream 82bp
chr4 146576317 146576317 1 + C T SKCM 146576316 + 146576296 146576336 41 TAGGTAATTCGTATTTCTGCCCGAAGTGGAGAGGGGATCTC TAGGTAATTCGTATTTCTGCCTGAAGTGGAGAGGGGATCTC < 41bp 1 0.783197059621284 1 0.101945698261261 experiment 0.433605880757431 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MMAA ENSG00000151611 CDS Human protein_coding chr4:146576316 chr4:146576317 stopgain 1.000 0 22 hm5C_associated_SNPs_33560 2 0 1 0 1 MMAA chr4:146576299 3'AG 146576299 Downstream 19bp
chr10 75548522 75548522 1 + T A SKCM 75548529 + 75548509 75548549 41 ACCCACCAGTGCCTGAGCAGCTACAGCTCCGAATTGCTTTT ACCCACCAGTGCCAGAGCAGCTACAGCTCCGAATTGCTTTT < 41bp 1 0.58098541590956 1 0.3891341984272 experiment 0.838029168180879 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75548529 chr10:75548522 synonymous SNV . 0 14 hm5C_associated_SNPs_33561 0 0 0 0 2 ZSWIM8 chr10:75548428 3'AG 75548428 Downstream 95bp
chr10 75548522 75548522 1 + T A SKCM 75548529 + 75548509 75548549 41 ACCCACCAGTGCCTGAGCAGCTACAGCTCCGAATTGCTTTT ACCCACCAGTGCCAGAGCAGCTACAGCTCCGAATTGCTTTT < 41bp 1 0.58098541590956 1 0.3891341984272 experiment 0.838029168180879 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75548529 chr10:75548522 synonymous SNV . 0 14 hm5C_associated_SNPs_33561 0 0 0 0 2 ZSWIM8 chr10:75548581 5'GT 75548581 Upstream 60bp
chr10 75548547 75548547 1 + T A SKCM 75548529 + 75548509 75548549 41 ACCCACCAGTGCCTGAGCAGCTACAGCTCCGAATTGCTTTT ACCCACCAGTGCCTGAGCAGCTACAGCTCCGAATTGCTATT < 41bp 1 0.567793112704121 1 0.392419308423996 experiment 0.864413774591757 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75548529 chr10:75548547 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_33562 0 0 1 0 1 ZSWIM8 chr10:75548581 5'GT 75548581 Upstream 35bp
chr8 48874103 48874103 1 + C T SKCM 48874104 + 48874084 48874124 41 GAGGATGCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA GAGGATGCCAGGTCATCTCTCTCTCAGAGACGTAGAGGCGA < 41bp 1 0.205658467314601 1 0.199394941329956 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874104 chr8:48874103 nonsynonymous SNV 0.009 2 20 hm5C_associated_SNPs_33563 0 0 1 1 1 MCM4 chr8:48874076 3'AG 48874076 Downstream 28bp
chr3 50131285 50131285 1 + C T SKCM 50131269 + 50131249 50131289 41 GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCAT GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTTCCAT < 41bp 1 0.411377728624937 1 0.257786899805069 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131269 chr3:50131285 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_33564 0 0 1 0 2 RBM5 chr3:50131254 3'AG 50131254 Downstream 32bp
chr3 50131285 50131285 1 + C T SKCM 50131269 + 50131249 50131289 41 GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCAT GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTTCCAT < 41bp 1 0.411377728624937 1 0.257786899805069 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131269 chr3:50131285 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_33564 0 0 1 0 2 RBM5 chr3:50131308 5'GT 50131308 Upstream 24bp
chr12 53516968 53516968 1 + C T SKCM 53516960 + 53516940 53516980 41 TTCTGCTTCGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT TTCTGCTTCGTCCTGGGGTTCTTCTATCTCGTCATGCTGAT < 41bp 1 0.124992421990677 1 0.0548134744167328 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53516960 chr12:53516968 nonsynonymous SNV 0.994 4 29 hm5C_associated_SNPs_33565 0 0 0 0 1 SOAT2 chr12:53517000 5'GT 53517000 Upstream 33bp
chr11 985546 985546 1 + T G SKCM 985545 + 985525 985565 41 CCAACGCGAAGAATGCCGTGCTCTTCGAGGCCATCAGCTTA CCAACGCGAAGAATGCCGTGCGCTTCGAGGCCATCAGCTTA < 41bp 1 0.0667777429914442 1 0.0536851584911346 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:985545 chr11:985546 nonsynonymous SNV 0.968 4 22 hm5C_associated_SNPs_33566 0 0 1 0 1 AP2A2 chr11:985582 5'GT 985582 Upstream 37bp
chr10 51582882 51582882 1 + A G SKCM 51582890 + 51582870 51582910 41 AGCTCCTTACATACCCAGCACCGACCCCCAGGACTGGCTTA AGCTCCTTACATGCCCAGCACCGACCCCCAGGACTGGCTTA < 41bp 1 0.095758258418885 1 0.0544359385967255 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582890 chr10:51582882 nonsynonymous SNV . 0 13 hm5C_associated_SNPs_33567 0 0 1 0 2 NCOA4 chr10:51582796 3'AG 51582796 Downstream 87bp
chr10 51582882 51582882 1 + A G SKCM 51582890 + 51582870 51582910 41 AGCTCCTTACATACCCAGCACCGACCCCCAGGACTGGCTTA AGCTCCTTACATGCCCAGCACCGACCCCCAGGACTGGCTTA < 41bp 1 0.095758258418885 1 0.0544359385967255 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582890 chr10:51582882 nonsynonymous SNV . 0 13 hm5C_associated_SNPs_33567 0 0 1 0 2 NCOA4 chr10:51582939 5'GT 51582939 Upstream 58bp
chr10 51582882 51582882 1 + A G SKCM 51582891 + 51582871 51582911 41 GCTCCTTACATACCCAGCACCGACCCCCAGGACTGGCTTAC GCTCCTTACATGCCCAGCACCGACCCCCAGGACTGGCTTAC < 41bp 1 0.262917586752687 1 0.0495795011520386 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582891 chr10:51582882 nonsynonymous SNV . 0 12 hm5C_associated_SNPs_33568 0 0 1 0 2 NCOA4 chr10:51582796 3'AG 51582796 Downstream 87bp
chr10 51582882 51582882 1 + A G SKCM 51582891 + 51582871 51582911 41 GCTCCTTACATACCCAGCACCGACCCCCAGGACTGGCTTAC GCTCCTTACATGCCCAGCACCGACCCCCAGGACTGGCTTAC < 41bp 1 0.262917586752687 1 0.0495795011520386 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582891 chr10:51582882 nonsynonymous SNV . 0 12 hm5C_associated_SNPs_33568 0 0 1 0 2 NCOA4 chr10:51582939 5'GT 51582939 Upstream 58bp
chr10 51582882 51582882 1 + A G SKCM 51582895 + 51582875 51582915 41 CTTACATACCCAGCACCGACCCCCAGGACTGGCTTACCCAA CTTACATGCCCAGCACCGACCCCCAGGACTGGCTTACCCAA < 41bp 1 0.611810280051286 1 0.309579849243164 experiment 0.776379439897428 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582895 chr10:51582882 nonsynonymous SNV . 0 8 hm5C_associated_SNPs_33569 0 0 1 0 2 NCOA4 chr10:51582796 3'AG 51582796 Downstream 87bp
chr10 51582882 51582882 1 + A G SKCM 51582895 + 51582875 51582915 41 CTTACATACCCAGCACCGACCCCCAGGACTGGCTTACCCAA CTTACATGCCCAGCACCGACCCCCAGGACTGGCTTACCCAA < 41bp 1 0.611810280051286 1 0.309579849243164 experiment 0.776379439897428 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582895 chr10:51582882 nonsynonymous SNV . 0 8 hm5C_associated_SNPs_33569 0 0 1 0 2 NCOA4 chr10:51582939 5'GT 51582939 Upstream 58bp
chr4 2943344 2943344 1 - G A SKCM 2943341 - 2943321 2943361 41 AAGCCCTCCTCACGGATCACCTGGCGGACTGCAGCCACCCG AAGCCCTCCTCACGGATTACCTGGCGGACTGCAGCCACCCG < 41bp 1 0.670202665141039 1 0.663257122039795 experiment 0.659594669717923 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOP14 ENSG00000087269 CDS Human protein_coding chr4:2943341 chr4:2943344 nonsynonymous SNV 0.009 3 18 hm5C_associated_SNPs_33570 0 0 1 0 1 NOP14 chr4:2943309 5'GT 2943309 Upstream 36bp
chr19 18729265 18729265 1 + C T SKCM 18729284 + 18729264 18729304 41 ACCCTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCCAGGT ATCCTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCCAGGT < 41bp 1 0.218598447732484 1 0.220620095729828 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM59L ENSG00000105696 CDS Human protein_coding chr19:18729284 chr19:18729265 nonsynonymous SNV 0.736 4 2 hm5C_associated_SNPs_33571 0 0 1 0 2 TMEM59L chr19:18729185 3'AG 18729185 Downstream 81bp
chr19 18729265 18729265 1 + C T SKCM 18729284 + 18729264 18729304 41 ACCCTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCCAGGT ATCCTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCCAGGT < 41bp 1 0.218598447732484 1 0.220620095729828 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM59L ENSG00000105696 CDS Human protein_coding chr19:18729284 chr19:18729265 nonsynonymous SNV 0.736 4 2 hm5C_associated_SNPs_33571 0 0 1 0 2 TMEM59L chr19:18729302 5'GT 18729302 Upstream 38bp
chr16 70562809 70562809 1 + G T SKCM 70562823 + 70562803 70562843 41 CCCGTGGGAAGATCTTGGAGCTGCTTCGCCCAGACCCCAAC CCCGTGTGAAGATCTTGGAGCTGCTTCGCCCAGACCCCAAC < 41bp 1 0.264446653013242 1 0.0608790218830109 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70562823 chr16:70562809 nonsynonymous SNV 0.999 4 7 hm5C_associated_SNPs_33572 0 0 1 0 1 SF3B3 chr16:70562776 3'AG 70562776 Downstream 34bp
chr16 89759817 89759817 1 + C T SKCM 89759823 + 89759803 89759843 41 CAGCGGATTTCGGCCTGGCCCGGGCCTATGGTGTCCCAGTA CAGCGGATTTCGGCTTGGCCCGGGCCTATGGTGTCCCAGTA < 41bp 1 0.625968113520139 1 0.812958896160126 experiment 0.748063772959722 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CDK10 ENSG00000185324 CDS Human protein_coding chr16:89759823 chr16:89759817 synonymous SNV . 0 15 hm5C_associated_SNPs_33575 0 0 1 0 2 CDK10 chr16:89759806 3'AG 89759806 Downstream 12bp
chr16 89759817 89759817 1 + C T SKCM 89759823 + 89759803 89759843 41 CAGCGGATTTCGGCCTGGCCCGGGCCTATGGTGTCCCAGTA CAGCGGATTTCGGCTTGGCCCGGGCCTATGGTGTCCCAGTA < 41bp 1 0.625968113520139 1 0.812958896160126 experiment 0.748063772959722 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CDK10 ENSG00000185324 CDS Human protein_coding chr16:89759823 chr16:89759817 synonymous SNV . 0 15 hm5C_associated_SNPs_33575 0 0 1 0 2 CDK10 chr16:89759875 5'GT 89759875 Upstream 59bp
chr20 47859212 47859212 1 + G A SKCM 47859198 + 47859178 47859218 41 ACCAACACAAGCAAGAAGGCCCTGAAACAGTATCGAGCTGG ACCAACACAAGCAAGAAGGCCCTGAAACAGTATCAAGCTGG < 41bp 1 0.181571018321673 1 0.192166417837143 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX27 ENSG00000124228 CDS Human protein_coding chr20:47859198 chr20:47859212 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_33585 0 0 1 0 2 DDX27 chr20:47859131 3'AG 47859131 Downstream 82bp
chr20 47859212 47859212 1 + G A SKCM 47859198 + 47859178 47859218 41 ACCAACACAAGCAAGAAGGCCCTGAAACAGTATCGAGCTGG ACCAACACAAGCAAGAAGGCCCTGAAACAGTATCAAGCTGG < 41bp 1 0.181571018321673 1 0.192166417837143 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX27 ENSG00000124228 CDS Human protein_coding chr20:47859198 chr20:47859212 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_33585 0 0 1 0 2 DDX27 chr20:47859218 5'GT 47859218 Upstream 7bp
chr16 89603197 89603197 1 + C T SKCM 89603199 + 89603179 89603219 41 CTCTTGACCAGCTACCCTCCCAGGGGACCATGAGGAAGCTC CTCTTGACCAGCTACCCTTCCAGGGGACCATGAGGAAGCTC < 41bp 1 0.700947909944049 1 0.798990607261658 experiment 0.598104180111902 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPG7 ENSG00000197912 CDS Human protein_coding chr16:89603199 chr16:89603197 nonsynonymous SNV 0.000 2 19 hm5C_associated_SNPs_33586 0 0 1 0 1 SPG7 chr16:89603173 3'AG 89603173 Downstream 25bp
chr6 26091219 26091219 1 + C T SKCM 26091207 + 26091187 26091227 41 TCGCCGTGTGGAGCCCCGAACTCCATGGGTTTCCAGTAGAA TCGCCGTGTGGAGCCCCGAACTCCATGGGTTTTCAGTAGAA < 41bp 1 0.799182881031394 1 0.929019212722778 experiment 0.401634237937212 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26091207 chr6:26091219 nonsynonymous SNV 0.000 1 33 hm5C_associated_SNPs_33587 0 0 0 0 1 HFE chr6:26091138 3'AG 26091138 Downstream 82bp
chr19 3525944 3525944 1 + C T SKCM 3525949 + 3525929 3525969 41 GGAGACCGCTTCATCCCCTCCAGAGCCGGAGCCAACTGGAG GGAGACCGCTTCATCTCCTCCAGAGCCGGAGCCAACTGGAG < 41bp 1 0.418772783301796 1 0.706745445728302 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3525949 chr19:3525944 nonsynonymous SNV 0.843 4 16 hm5C_associated_SNPs_33591 0 0 1 0 2 FZR1 chr19:3525866 3'AG 3525866 Downstream 79bp
chr19 3525944 3525944 1 + C T SKCM 3525949 + 3525929 3525969 41 GGAGACCGCTTCATCCCCTCCAGAGCCGGAGCCAACTGGAG GGAGACCGCTTCATCTCCTCCAGAGCCGGAGCCAACTGGAG < 41bp 1 0.418772783301796 1 0.706745445728302 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3525949 chr19:3525944 nonsynonymous SNV 0.843 4 16 hm5C_associated_SNPs_33591 0 0 1 0 2 FZR1 chr19:3525991 5'GT 3525991 Upstream 48bp
chr1 228403514 228403514 1 + C T SKCM 228403511 + 228403491 228403531 41 GCCAACGGCATTGAGAGCAGCATCCGGATGGAGGTCCGGGG GCCAACGGCATTGAGAGCAGCATTCGGATGGAGGTCCGGGG < 41bp 1 0.0296663662804089 1 0.067886620759964 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228403511 chr1:228403514 synonymous SNV . 0 24 hm5C_associated_SNPs_33592 0 0 0 0 1 OBSCN chr1:228403530 5'GT 228403530 Upstream 17bp
chr19 49967982 49967982 1 + C T SKCM 49967998 + 49967978 49968018 41 TGTTCCCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCA TGTTTCCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCA < 41bp 1 0.519905912193112 1 0.473666131496429 experiment 0.960188175613776 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH16A1 ENSG00000161618 CDS Human other chr19:49967998 chr19:49967982 nonsynonymous SNV 0.048 0 5 hm5C_associated_SNPs_33593 0 0 1 0 2 ALDH16A1 chr19:49967889 3'AG 49967889 Downstream 94bp
chr19 49967982 49967982 1 + C T SKCM 49967998 + 49967978 49968018 41 TGTTCCCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCA TGTTTCCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCA < 41bp 1 0.519905912193112 1 0.473666131496429 experiment 0.960188175613776 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49967998 chr19:49967982 nonsynonymous SNV 0.048 0 5 hm5C_associated_SNPs_33593 0 0 1 0 2 ALDH16A1 chr19:49968019 5'GT 49968019 Upstream 38bp
chr17 30806301 30806301 1 + T C SKCM 30806305 + 30806285 30806325 41 GGGCAGAGCTCCGGGATGACCCAATCATCAGCACACACTTG GGGCAGAGCTCCGGGACGACCCAATCATCAGCACACACTTG < 41bp 1 0.172605349733022 1 0.249768614768982 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30806305 chr17:30806301 synonymous SNV . 0 17 hm5C_associated_SNPs_33595 0 0 1 0 2 PSMD11 chr17:30806269 3'AG 30806269 Downstream 33bp
chr17 30806301 30806301 1 + T C SKCM 30806305 + 30806285 30806325 41 GGGCAGAGCTCCGGGATGACCCAATCATCAGCACACACTTG GGGCAGAGCTCCGGGACGACCCAATCATCAGCACACACTTG < 41bp 1 0.172605349733022 1 0.249768614768982 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30806305 chr17:30806301 synonymous SNV . 0 17 hm5C_associated_SNPs_33595 0 0 1 0 2 PSMD11 chr17:30806394 5'GT 30806394 Upstream 94bp
chr1 10689598 10689598 1 + C T SKCM 10689614 + 10689594 10689634 41 GTTCCCTCCATCCCCATCAGCCCCGAAGATCCCCTCCTGGC GTTCTCTCCATCCCCATCAGCCCCGAAGATCCCCTCCTGGC < 41bp 1 0.300504751328477 1 0.0740545094013214 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PEX14 ENSG00000142655 CDS Human protein_coding chr1:10689614 chr1:10689598 nonsynonymous SNV 0.277 2 5 hm5C_associated_SNPs_33596 0 0 1 0 1 PEX14 chr1:10689588 3'AG 10689588 Downstream 11bp
chr10 43604510 43604510 1 + G A SKCM 43604501 + 43604481 43604521 41 CTGGTTCTCAACCGGAACCTCTCCATCTCGGAGAACCGCAC CTGGTTCTCAACCGGAACCTCTCCATCTCAGAGAACCGCAC < 41bp 1 0.655955636328146 1 0.974481880664825 experiment 0.688088727343707 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RET ENSG00000165731 CDS Human protein_coding chr10:43604501 chr10:43604510 synonymous SNV . 0 30 hm5C_associated_SNPs_33597 3 0 1 0 1 RET chr10:43604479 3'AG 43604479 Downstream 32bp
chr1 154207165 154207165 1 + G A SKCM 154207147 + 154207127 154207167 41 ACGGAATCCAATGAGGAAGGCAAAGAAAATCGAGACCGGGA ACGGAATCCAATGAGGAAGGCAAAGAAAATCGAGACCGAGA < 41bp 1 0.398677606804189 1 0.358623564243317 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154207147 chr1:154207165 synonymous SNV . 0 39 hm5C_associated_SNPs_33598 0 0 1 0 1 UBAP2L chr1:154207067 3'AG 154207067 Downstream 99bp
chr1 154207166 154207166 1 + G A SKCM 154207147 + 154207127 154207167 41 ACGGAATCCAATGAGGAAGGCAAAGAAAATCGAGACCGGGA ACGGAATCCAATGAGGAAGGCAAAGAAAATCGAGACCGGAA < 41bp 1 0.442105497360521 1 0.39484965801239 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154207147 chr1:154207166 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_33599 0 0 1 0 1 UBAP2L chr1:154207067 3'AG 154207067 Downstream 100bp
chr21 45483585 45483585 1 + C A SKCM 45483598 + 45483578 45483618 41 TGCTGCTCTTCCTGCAGAGGCCGTGGGAGGTGGCCCAGCGC TGCTGCTATTCCTGCAGAGGCCGTGGGAGGTGGCCCAGCGC < 41bp 1 0.386732720786428 1 0.456271260976791 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45483598 chr21:45483585 synonymous SNV . 0 8 hm5C_associated_SNPs_33601 0 0 1 0 1 TRAPPC10 chr21:45483666 5'GT 45483666 Upstream 82bp
chr21 45483584 45483584 1 + T C SKCM 45483598 + 45483578 45483618 41 TGCTGCTCTTCCTGCAGAGGCCGTGGGAGGTGGCCCAGCGC TGCTGCCCTTCCTGCAGAGGCCGTGGGAGGTGGCCCAGCGC < 41bp 1 0.383756289076323 1 0.459765732288361 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45483598 chr21:45483584 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_33605 0 0 1 0 1 TRAPPC10 chr21:45483666 5'GT 45483666 Upstream 83bp
chr2 233128139 233128139 1 + C T SKCM 233128132 + 233128112 233128152 41 CAGCAGCGCTTTGTGGACGGCGCACTTCGTTTGGATCAGGT CAGCAGCGCTTTGTGGACGGCGCACTTTGTTTGGATCAGGT < 41bp 1 0.121075433220633 1 0.386913746595383 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DIS3L2 ENSG00000144535 CDS Human protein_coding chr2:233128132 chr2:233128139 nonsynonymous SNV 0.936 4 28 hm5C_associated_SNPs_33606 0 0 0 0 1 DIS3L2 chr2:233128150 5'GT 233128150 Upstream 12bp
chr7 98609786 98609786 1 + C T SKCM 98609794 + 98609774 98609814 41 TCTCTCGGCCGCCGGGCAGCCAGAGAACATGGACAGCCAGC TCTCTCGGCCGCTGGGCAGCCAGAGAACATGGACAGCCAGC < 41bp 1 0.317580618634312 1 0.915179252624512 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98609794 chr7:98609786 synonymous SNV . 0 13 hm5C_associated_SNPs_33607 0 0 1 0 1 TRRAP chr7:98609694 3'AG 98609694 Downstream 93bp
chr11 118495748 118495748 1 + C T SKCM 118495741 + 118495721 118495761 41 AGCATGATTCCAGCAGGGGGCCGAGCCCCTGGGCCCCCCTA AGCATGATTCCAGCAGGGGGCCGAGCCTCTGGGCCCCCCTA < 41bp 1 0.249148766728693 1 0.491896897554398 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495741 chr11:118495748 nonsynonymous SNV 0.976 0 28 hm5C_associated_SNPs_33609 0 0 0 0 2 PHLDB1 chr11:118495650 3'AG 118495650 Downstream 99bp
chr11 118495748 118495748 1 + C T SKCM 118495741 + 118495721 118495761 41 AGCATGATTCCAGCAGGGGGCCGAGCCCCTGGGCCCCCCTA AGCATGATTCCAGCAGGGGGCCGAGCCTCTGGGCCCCCCTA < 41bp 1 0.249148766728693 1 0.491896897554398 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495741 chr11:118495748 nonsynonymous SNV 0.976 0 28 hm5C_associated_SNPs_33609 0 0 0 0 2 PHLDB1 chr11:118495775 5'GT 118495775 Upstream 28bp
chr11 118495748 118495748 1 + C T SKCM 118495742 + 118495722 118495762 41 GCATGATTCCAGCAGGGGGCCGAGCCCCTGGGCCCCCCTAC GCATGATTCCAGCAGGGGGCCGAGCCTCTGGGCCCCCCTAC < 41bp 1 0.491573421020295 1 0.831153035163879 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495742 chr11:118495748 nonsynonymous SNV 0.976 0 27 hm5C_associated_SNPs_33610 0 0 0 0 2 PHLDB1 chr11:118495650 3'AG 118495650 Downstream 99bp
chr11 118495748 118495748 1 + C T SKCM 118495742 + 118495722 118495762 41 GCATGATTCCAGCAGGGGGCCGAGCCCCTGGGCCCCCCTAC GCATGATTCCAGCAGGGGGCCGAGCCTCTGGGCCCCCCTAC < 41bp 1 0.491573421020295 1 0.831153035163879 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495742 chr11:118495748 nonsynonymous SNV 0.976 0 27 hm5C_associated_SNPs_33610 0 0 0 0 2 PHLDB1 chr11:118495775 5'GT 118495775 Upstream 28bp
chr11 118495748 118495748 1 + C T SKCM 118495754 + 118495734 118495774 41 CAGGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCT CAGGGGGCCGAGCCTCTGGGCCCCCCTACAGCCCTGTTCCT < 41bp 1 0.0851576664626709 1 0.0263330638408661 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495754 chr11:118495748 nonsynonymous SNV 0.976 0 15 hm5C_associated_SNPs_33611 0 0 0 0 2 PHLDB1 chr11:118495650 3'AG 118495650 Downstream 99bp
chr11 118495748 118495748 1 + C T SKCM 118495754 + 118495734 118495774 41 CAGGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCT CAGGGGGCCGAGCCTCTGGGCCCCCCTACAGCCCTGTTCCT < 41bp 1 0.0851576664626709 1 0.0263330638408661 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495754 chr11:118495748 nonsynonymous SNV 0.976 0 15 hm5C_associated_SNPs_33611 0 0 0 0 2 PHLDB1 chr11:118495775 5'GT 118495775 Upstream 28bp
chr11 118495748 118495748 1 + C T SKCM 118495755 + 118495735 118495775 41 AGGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTG AGGGGGCCGAGCCTCTGGGCCCCCCTACAGCCCTGTTCCTG < 41bp 1 0.115945118605792 1 0.0247358977794647 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495755 chr11:118495748 nonsynonymous SNV 0.976 0 14 hm5C_associated_SNPs_33612 0 0 0 0 2 PHLDB1 chr11:118495650 3'AG 118495650 Downstream 99bp
chr11 118495748 118495748 1 + C T SKCM 118495755 + 118495735 118495775 41 AGGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTG AGGGGGCCGAGCCTCTGGGCCCCCCTACAGCCCTGTTCCTG < 41bp 1 0.115945118605792 1 0.0247358977794647 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495755 chr11:118495748 nonsynonymous SNV 0.976 0 14 hm5C_associated_SNPs_33612 0 0 0 0 2 PHLDB1 chr11:118495775 5'GT 118495775 Upstream 28bp
chr11 118495748 118495748 1 + C T SKCM 118495756 + 118495736 118495776 41 GGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGG GGGGGCCGAGCCTCTGGGCCCCCCTACAGCCCTGTTCCTGG < 41bp 1 0.189285177664161 1 0.0439813435077667 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495756 chr11:118495748 nonsynonymous SNV 0.976 0 13 hm5C_associated_SNPs_33613 0 0 0 0 2 PHLDB1 chr11:118495650 3'AG 118495650 Downstream 99bp
chr11 118495748 118495748 1 + C T SKCM 118495756 + 118495736 118495776 41 GGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGG GGGGGCCGAGCCTCTGGGCCCCCCTACAGCCCTGTTCCTGG < 41bp 1 0.189285177664161 1 0.0439813435077667 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495756 chr11:118495748 nonsynonymous SNV 0.976 0 13 hm5C_associated_SNPs_33613 0 0 0 0 2 PHLDB1 chr11:118495775 5'GT 118495775 Upstream 28bp
chr11 118495748 118495748 1 + C T SKCM 118495757 + 118495737 118495777 41 GGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGGT GGGGCCGAGCCTCTGGGCCCCCCTACAGCCCTGTTCCTGGT < 41bp 1 0.208043124932041 1 0.0287624001502991 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495757 chr11:118495748 nonsynonymous SNV 0.976 0 12 hm5C_associated_SNPs_33614 0 0 0 0 2 PHLDB1 chr11:118495650 3'AG 118495650 Downstream 99bp
chr11 118495748 118495748 1 + C T SKCM 118495757 + 118495737 118495777 41 GGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGGT GGGGCCGAGCCTCTGGGCCCCCCTACAGCCCTGTTCCTGGT < 41bp 1 0.208043124932041 1 0.0287624001502991 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495757 chr11:118495748 nonsynonymous SNV 0.976 0 12 hm5C_associated_SNPs_33614 0 0 0 0 2 PHLDB1 chr11:118495775 5'GT 118495775 Upstream 28bp
chr11 118495748 118495748 1 + C T SKCM 118495758 + 118495738 118495778 41 GGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGGTA GGGCCGAGCCTCTGGGCCCCCCTACAGCCCTGTTCCTGGTA < 41bp 1 0.0575273690917725 1 0.348158091306686 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495758 chr11:118495748 nonsynonymous SNV 0.976 0 11 hm5C_associated_SNPs_33615 0 0 0 0 2 PHLDB1 chr11:118495650 3'AG 118495650 Downstream 99bp
chr11 118495748 118495748 1 + C T SKCM 118495758 + 118495738 118495778 41 GGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGGTA GGGCCGAGCCTCTGGGCCCCCCTACAGCCCTGTTCCTGGTA < 41bp 1 0.0575273690917725 1 0.348158091306686 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495758 chr11:118495748 nonsynonymous SNV 0.976 0 11 hm5C_associated_SNPs_33615 0 0 0 0 2 PHLDB1 chr11:118495775 5'GT 118495775 Upstream 28bp
chr5 73205660 73205660 1 + G A SKCM 73205662 + 73205642 73205682 41 GCCCAGCAGAGCCTGCTGGGCCACTGGAAGCACGGCCGGCA GCCCAGCAGAGCCTGCTGAGCCACTGGAAGCACGGCCGGCA < 41bp 1 0.268530387177606 1 0.145507305860519 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARHGEF28 ENSG00000214944 CDS Human protein_coding chr5:73205662 chr5:73205660 nonsynonymous SNV 0.014 0 19 hm5C_associated_SNPs_33616 0 0 0 0 1 ARHGEF28 chr5:73205722 5'GT 73205722 Upstream 63bp
chr15 41859614 41859614 1 + C T SKCM 41859602 + 41859582 41859622 41 GAAGTCCTGGCTGTTGTGGTCCCTGTGCCCCCCTTTACCTG GAAGTCCTGGCTGTTGTGGTCCCTGTGCCCCCTTTTACCTG < 41bp 1 0.256277496394813 1 0.042967289686203 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41859602 chr15:41859614 synonymous SNV . 0 33 hm5C_associated_SNPs_33617 0 0 1 0 1 TYRO3 chr15:41859558 3'AG 41859558 Downstream 57bp
chr7 142457342 142457342 1 + C T SKCM 142457345 + 142457325 142457365 41 ACTCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTG ACTCTACCACCATGAATTCACTCCTGATCCTTACCTTTGTG < 41bp 1 0.317631062244202 1 0.0967507064342499 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457345 chr7:142457342 nonsynonymous SNV 0.011 1 18 hm5C_associated_SNPs_33618 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 34bp
chr7 142457342 142457342 1 + C T SKCM 142457347 + 142457327 142457367 41 TCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGC TCTACCACCATGAATTCACTCCTGATCCTTACCTTTGTGGC < 41bp 1 0.280092214169368 1 0.279223620891571 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457347 chr7:142457342 nonsynonymous SNV 0.011 1 16 hm5C_associated_SNPs_33619 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 34bp
chr7 142457342 142457342 1 + C T SKCM 142457348 + 142457328 142457368 41 CTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGCA CTACCACCATGAATTCACTCCTGATCCTTACCTTTGTGGCA < 41bp 1 0.108164953918099 1 0.393027812242508 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457348 chr7:142457342 nonsynonymous SNV 0.011 1 15 hm5C_associated_SNPs_33620 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 34bp
chr7 142457342 142457342 1 + C T SKCM 142457353 + 142457333 142457373 41 ACCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGC ACCATGAATTCACTCCTGATCCTTACCTTTGTGGCAGCTGC < 41bp 1 0.0699679111757006 1 0.033601313829422 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457353 chr7:142457342 nonsynonymous SNV 0.011 1 10 hm5C_associated_SNPs_33621 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 34bp
chr7 142457342 142457342 1 + C T SKCM 142457354 + 142457334 142457374 41 CCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCT CCATGAATTCACTCCTGATCCTTACCTTTGTGGCAGCTGCT < 41bp 1 0.0463043308769519 1 0.0507729351520538 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457354 chr7:142457342 nonsynonymous SNV 0.011 1 9 hm5C_associated_SNPs_33622 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 34bp
chr7 142457342 142457342 1 + C T SKCM 142457358 + 142457338 142457378 41 GAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTG GAATTCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTG < 41bp 1 0.0380944197543241 1 0.024027019739151 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457358 chr7:142457342 nonsynonymous SNV 0.011 1 5 hm5C_associated_SNPs_33623 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 34bp
chr7 142457342 142457342 1 + C T SKCM 142457359 + 142457339 142457379 41 AATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTGA AATTCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTGA < 41bp 1 0.170778780212582 1 0.255864024162292 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457359 chr7:142457342 nonsynonymous SNV 0.011 1 4 hm5C_associated_SNPs_33624 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 34bp
chr6 7579526 7579526 1 + G A SKCM 7579519 + 7579499 7579539 41 ATTCCACAGCTGAAAAATACCAAGATCGAAGTTTTGGAAGA ATTCCACAGCTGAAAAATACCAAGATCAAAGTTTTGGAAGA < 41bp 1 0.684432874845738 1 0.699031949043274 experiment 0.631134250308524 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7579519 chr6:7579526 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_33627 0 0 1 0 1 DSP chr6:7579508 3'AG 7579508 Downstream 19bp
chr7 142457338 142457338 1 + G A SKCM 142457345 + 142457325 142457365 41 ACTCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTG ACTCTACCACCATAAATCCACTCCTGATCCTTACCTTTGTG < 41bp 1 0.195728139604046 1 0.0631865859031677 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457345 chr7:142457338 nonsynonymous SNV 0.029 4 14 hm5C_associated_SNPs_33628 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 38bp
chr7 142457338 142457338 1 + G A SKCM 142457347 + 142457327 142457367 41 TCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGC TCTACCACCATAAATCCACTCCTGATCCTTACCTTTGTGGC < 41bp 1 0.21333078750021 1 0.153601348400116 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457347 chr7:142457338 nonsynonymous SNV 0.029 4 12 hm5C_associated_SNPs_33629 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 38bp
chr7 142457338 142457338 1 + G A SKCM 142457348 + 142457328 142457368 41 CTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGCA CTACCACCATAAATCCACTCCTGATCCTTACCTTTGTGGCA < 41bp 1 0.102857902709922 1 0.171760559082031 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457348 chr7:142457338 nonsynonymous SNV 0.029 4 11 hm5C_associated_SNPs_33630 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 38bp
chr7 142457338 142457338 1 + G A SKCM 142457353 + 142457333 142457373 41 ACCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGC ACCATAAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGC < 41bp 1 0.0681257863396937 1 0.0354169309139252 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457353 chr7:142457338 nonsynonymous SNV 0.029 4 6 hm5C_associated_SNPs_33631 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 38bp
chr7 142457338 142457338 1 + G A SKCM 142457354 + 142457334 142457374 41 CCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCT CCATAAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCT < 41bp 1 0.0431095422787777 1 0.0870343744754791 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457354 chr7:142457338 nonsynonymous SNV 0.029 4 5 hm5C_associated_SNPs_33632 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 38bp
chr7 142457338 142457338 1 + G A SKCM 142457358 + 142457338 142457378 41 GAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTG AAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTG < 41bp 1 0.0372190033596446 1 0.0260632634162903 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457358 chr7:142457338 nonsynonymous SNV 0.029 4 1 hm5C_associated_SNPs_33633 0 0 0 0 1 PRSS1 chr7:142457375 5'GT 142457375 Upstream 38bp
chr20 62366045 62366045 1 + C T SKCM 62366054 + 62366034 62366074 41 TGCCCTCTGTCCGTCTCTTGCAGTGGTGGGGTCAGATGCTG TGCCCTCTGTCTGTCTCTTGCAGTGGTGGGGTCAGATGCTG < 41bp 1 0.425977829304929 1 0.303201377391815 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZGPAT ENSG00000197114 CDS Human protein_coding chr20:62366054 chr20:62366045 nonsynonymous SNV 0.532 1 12 hm5C_associated_SNPs_33634 0 0 1 0 1 ZGPAT chr20:62365997 3'AG 62365997 Downstream 49bp
chr7 150764057 150764057 1 + C T SKCM 150764061 + 150764041 150764081 41 ACCTCGGGCCCGACCCCGGGCCCCCCACAAGCCCCATGAGG ACCTCGGGCCCGACCCTGGGCCCCCCACAAGCCCCATGAGG < 41bp 1 0.0528611840431035 1 0.0588125288486481 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150764061 chr7:150764057 nonsynonymous SNV 0.956 3 17 hm5C_associated_SNPs_33635 0 0 1 0 1 SLC4A2 chr7:150764080 5'GT 150764080 Upstream 24bp
chr7 150764057 150764057 1 + C T SKCM 150764062 + 150764042 150764082 41 CCTCGGGCCCGACCCCGGGCCCCCCACAAGCCCCATGAGGT CCTCGGGCCCGACCCTGGGCCCCCCACAAGCCCCATGAGGT < 41bp 1 0.0404339469485251 1 0.0876970887184143 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150764062 chr7:150764057 nonsynonymous SNV 0.956 3 16 hm5C_associated_SNPs_33636 0 0 1 0 1 SLC4A2 chr7:150764080 5'GT 150764080 Upstream 24bp
chr7 150764057 150764057 1 + C T SKCM 150764063 + 150764043 150764083 41 CTCGGGCCCGACCCCGGGCCCCCCACAAGCCCCATGAGGTA CTCGGGCCCGACCCTGGGCCCCCCACAAGCCCCATGAGGTA < 41bp 1 0.282654515794971 1 0.146476119756699 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150764063 chr7:150764057 nonsynonymous SNV 0.956 3 15 hm5C_associated_SNPs_33637 0 0 1 0 1 SLC4A2 chr7:150764080 5'GT 150764080 Upstream 24bp
chr22 39382370 39382370 1 + C T SKCM 39382388 + 39382368 39382408 41 TTCGATGAAAATTATGCATTCCTGCACCGCACGCTAAAGGA TTTGATGAAAATTATGCATTCCTGCACCGCACGCTAAAGGA < 41bp 1 0.0760868735387691 1 0.0984456837177277 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control APOBEC3B ENSG00000179750 CDS Human protein_coding chr22:39382388 chr22:39382370 synonymous SNV . 0 3 hm5C_associated_SNPs_33638 0 0 0 0 2 APOBEC3B chr22:39382303 3'AG 39382303 Downstream 68bp
chr22 39382370 39382370 1 + C T SKCM 39382388 + 39382368 39382408 41 TTCGATGAAAATTATGCATTCCTGCACCGCACGCTAAAGGA TTTGATGAAAATTATGCATTCCTGCACCGCACGCTAAAGGA < 41bp 1 0.0760868735387691 1 0.0984456837177277 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control APOBEC3B ENSG00000179750 CDS Human protein_coding chr22:39382388 chr22:39382370 synonymous SNV . 0 3 hm5C_associated_SNPs_33638 0 0 0 0 2 APOBEC3B chr22:39382417 5'GT 39382417 Upstream 48bp
chr20 32439967 32439967 1 + C T SKCM 32439982 + 32439962 32440002 41 CAGTCCCTCTACCAAATGTTCCCTCTATAGCCCTACCATCA CAGTCTCTCTACCAAATGTTCCCTCTATAGCCCTACCATCA < 41bp 1 0.0624524716665205 1 0.0903692543506622 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHMP4B ENSG00000101421 CDS Human protein_coding chr20:32439982 chr20:32439967 nonsynonymous SNV 0.998 1 6 hm5C_associated_SNPs_33639 0 0 1 0 2 CHMP4B chr20:32439883 3'AG 32439883 Downstream 85bp
chr20 32439967 32439967 1 + C T SKCM 32439982 + 32439962 32440002 41 CAGTCCCTCTACCAAATGTTCCCTCTATAGCCCTACCATCA CAGTCTCTCTACCAAATGTTCCCTCTATAGCCCTACCATCA < 41bp 1 0.0624524716665205 1 0.0903692543506622 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHMP4B ENSG00000101421 CDS Human protein_coding chr20:32439982 chr20:32439967 nonsynonymous SNV 0.998 1 6 hm5C_associated_SNPs_33639 0 0 1 0 2 CHMP4B chr20:32440009 5'GT 32440009 Upstream 43bp
chr20 32439967 32439967 1 + C T SKCM 32439983 + 32439963 32440003 41 AGTCCCTCTACCAAATGTTCCCTCTATAGCCCTACCATCAA AGTCTCTCTACCAAATGTTCCCTCTATAGCCCTACCATCAA < 41bp 1 0.0572569704641275 1 0.0617979764938354 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CHMP4B ENSG00000101421 CDS Human protein_coding chr20:32439983 chr20:32439967 nonsynonymous SNV 0.998 1 5 hm5C_associated_SNPs_33640 0 0 1 0 2 CHMP4B chr20:32439883 3'AG 32439883 Downstream 85bp
chr20 32439967 32439967 1 + C T SKCM 32439983 + 32439963 32440003 41 AGTCCCTCTACCAAATGTTCCCTCTATAGCCCTACCATCAA AGTCTCTCTACCAAATGTTCCCTCTATAGCCCTACCATCAA < 41bp 1 0.0572569704641275 1 0.0617979764938354 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CHMP4B ENSG00000101421 CDS Human protein_coding chr20:32439983 chr20:32439967 nonsynonymous SNV 0.998 1 5 hm5C_associated_SNPs_33640 0 0 1 0 2 CHMP4B chr20:32440009 5'GT 32440009 Upstream 43bp
chr6 31912759 31912759 1 + G A SKCM 31912772 + 31912752 31912792 41 GGCAGGAGAATCTGGGGGAGCAGTTTTCCTTGAGCGGAGAT GGCAGGAAAATCTGGGGGAGCAGTTTTCCTTGAGCGGAGAT < 41bp 1 0.145475565653312 1 0.261187165975571 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C2 ENSG00000166278 CDS Human protein_coding chr6:31912772 chr6:31912759 nonsynonymous SNV 0.999 4 8 hm5C_associated_SNPs_33641 0 0 1 0 2 C2 chr6:31912757 3'AG 31912757 Downstream 3bp
chr6 31912759 31912759 1 + G A SKCM 31912772 + 31912752 31912792 41 GGCAGGAGAATCTGGGGGAGCAGTTTTCCTTGAGCGGAGAT GGCAGGAAAATCTGGGGGAGCAGTTTTCCTTGAGCGGAGAT < 41bp 1 0.145475565653312 1 0.261187165975571 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C2 ENSG00000166278 CDS Human protein_coding chr6:31912772 chr6:31912759 nonsynonymous SNV 0.999 4 8 hm5C_associated_SNPs_33641 0 0 1 0 2 C2 chr6:31912806 5'GT 31912806 Upstream 48bp
chr11 63743726 63743726 1 + C T SKCM 63743738 + 63743718 63743758 41 TCCTGCTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCT TCCTGCTTTGTGACCTTCCTCCTGCCAGCGGGCTGGATCCT < 41bp 1 0.19042256881974 1 0.415048271417618 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control COX8A ENSG00000176340 CDS Human protein_coding chr11:63743738 chr11:63743726 synonymous SNV . 0 9 hm5C_associated_SNPs_33642 0 0 1 0 1 COX8A chr11:63743697 3'AG 63743697 Downstream 30bp
chr11 63743726 63743726 1 + C T SKCM 63743739 + 63743719 63743759 41 CCTGCTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCTG CCTGCTTTGTGACCTTCCTCCTGCCAGCGGGCTGGATCCTG < 41bp 1 0.551815636201735 1 0.295432299375534 experiment 0.896368727596531 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COX8A ENSG00000176340 CDS Human protein_coding chr11:63743739 chr11:63743726 synonymous SNV . 0 8 hm5C_associated_SNPs_33643 0 0 1 0 1 COX8A chr11:63743697 3'AG 63743697 Downstream 30bp
chr19 42373208 42373208 1 + C T SKCM 42373193 + 42373173 42373213 41 GTCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGC GTCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCTGAGGC < 41bp 1 0.245086808427614 1 0.107242614030838 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373193 chr19:42373208 stopgain 0.999 1 36 hm5C_associated_SNPs_33644 2 0 1 0 1 RPS19 chr19:42373284 5'GT 42373284 Upstream 77bp
chr19 42373208 42373208 1 + C T SKCM 42373194 + 42373174 42373214 41 TCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCT TCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCTGAGGCT < 41bp 1 0.25277075502836 1 0.11799544095993 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373194 chr19:42373208 stopgain 0.999 1 35 hm5C_associated_SNPs_33645 2 0 1 0 1 RPS19 chr19:42373284 5'GT 42373284 Upstream 77bp
chr19 42373208 42373208 1 + C T SKCM 42373198 + 42373178 42373218 41 AGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAA AGAAACGGCGTCATGCCCAGCCACTTCAGCTGAGGCTCCAA < 41bp 1 0.13261825134272 1 0.480832546949387 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373198 chr19:42373208 stopgain 0.999 1 31 hm5C_associated_SNPs_33646 2 0 1 0 1 RPS19 chr19:42373284 5'GT 42373284 Upstream 77bp
chr19 42373208 42373208 1 + C T SKCM 42373199 + 42373179 42373219 41 GAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAAG GAAACGGCGTCATGCCCAGCCACTTCAGCTGAGGCTCCAAG < 41bp 1 0.189321505833674 1 0.251600384712219 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373199 chr19:42373208 stopgain 0.999 1 30 hm5C_associated_SNPs_33647 2 0 1 0 1 RPS19 chr19:42373284 5'GT 42373284 Upstream 77bp
chr19 42373208 42373208 1 + C T SKCM 42373215 + 42373195 42373235 41 CAGCCACTTCAGCCGAGGCTCCAAGAGTGTGGCCCGCCGGG CAGCCACTTCAGCTGAGGCTCCAAGAGTGTGGCCCGCCGGG < 41bp 1 0.271891267936129 1 0.364092320203781 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373215 chr19:42373208 stopgain 0.999 1 14 hm5C_associated_SNPs_33648 2 0 1 0 1 RPS19 chr19:42373284 5'GT 42373284 Upstream 77bp
chr19 42373208 42373208 1 + C T SKCM 42373228 + 42373208 42373248 41 CGAGGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCT TGAGGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCT < 41bp 1 0.275680391513238 1 0.0794028043746948 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373228 chr19:42373208 stopgain 0.999 1 1 hm5C_associated_SNPs_33649 2 0 1 0 1 RPS19 chr19:42373284 5'GT 42373284 Upstream 77bp
chr17 38152518 38152518 1 + C T SKCM 38152535 + 38152515 38152555 41 ATTCCACCCGAGAGCCCCAGCTAGCCTTCCACCAGCGCATC ATTTCACCCGAGAGCCCCAGCTAGCCTTCCACCAGCGCATC < 41bp 1 0.352584191130796 1 0.193485230207443 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38152535 chr17:38152518 nonsynonymous SNV 0.996 3 4 hm5C_associated_SNPs_33650 0 0 1 0 2 PSMD3 chr17:38152436 3'AG 38152436 Downstream 83bp
chr17 38152518 38152518 1 + C T SKCM 38152535 + 38152515 38152555 41 ATTCCACCCGAGAGCCCCAGCTAGCCTTCCACCAGCGCATC ATTTCACCCGAGAGCCCCAGCTAGCCTTCCACCAGCGCATC < 41bp 1 0.352584191130796 1 0.193485230207443 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38152535 chr17:38152518 nonsynonymous SNV 0.996 3 4 hm5C_associated_SNPs_33650 0 0 1 0 2 PSMD3 chr17:38152591 5'GT 38152591 Upstream 74bp
chr7 142458495 142458495 1 + G T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTTG < 41bp 1 0.219667877701044 1 0.350595206022263 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458495 nonsynonymous SNV 0.199 5 40 hm5C_associated_SNPs_33656 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 90bp
chr7 142458495 142458495 1 + G T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTTG < 41bp 1 0.219667877701044 1 0.350595206022263 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458495 nonsynonymous SNV 0.199 5 40 hm5C_associated_SNPs_33656 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 16bp
chr7 142458495 142458495 1 + G T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTTG < 41bp 1 0.219667877701044 1 0.350595206022263 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458495 nonsynonymous SNV 0.199 5 40 hm5C_associated_SNPs_33656 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 71bp
chr7 142458495 142458495 1 + G T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTTGC < 41bp 1 0.629733733735896 1 0.826833844184875 experiment 0.740532532528208 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458495 nonsynonymous SNV 0.199 5 39 hm5C_associated_SNPs_33657 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 90bp
chr7 142458495 142458495 1 + G T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTTGC < 41bp 1 0.629733733735896 1 0.826833844184875 experiment 0.740532532528208 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458495 nonsynonymous SNV 0.199 5 39 hm5C_associated_SNPs_33657 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 16bp
chr7 142458495 142458495 1 + G T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTTGC < 41bp 1 0.629733733735896 1 0.826833844184875 experiment 0.740532532528208 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458495 nonsynonymous SNV 0.199 5 39 hm5C_associated_SNPs_33657 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 71bp
chr7 142458495 142458495 1 + G T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACCAGGTGTCCCTGAATTCTTGCTACCACT < 41bp 1 0.108181806329444 1 0.0593807101249695 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458495 nonsynonymous SNV 0.199 5 32 hm5C_associated_SNPs_33658 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 90bp
chr7 142458495 142458495 1 + G T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACCAGGTGTCCCTGAATTCTTGCTACCACT < 41bp 1 0.108181806329444 1 0.0593807101249695 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458495 nonsynonymous SNV 0.199 5 32 hm5C_associated_SNPs_33658 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 16bp
chr7 142458495 142458495 1 + G T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACCAGGTGTCCCTGAATTCTTGCTACCACT < 41bp 1 0.108181806329444 1 0.0593807101249695 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458495 nonsynonymous SNV 0.199 5 32 hm5C_associated_SNPs_33658 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 71bp
chr7 142458495 142458495 1 + G T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACCAGGTGTCCCTGAATTCTTGCTACCACTT < 41bp 1 0.269959300762219 1 0.0877957940101624 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458495 nonsynonymous SNV 0.199 5 31 hm5C_associated_SNPs_33659 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 90bp
chr7 142458495 142458495 1 + G T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACCAGGTGTCCCTGAATTCTTGCTACCACTT < 41bp 1 0.269959300762219 1 0.0877957940101624 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458495 nonsynonymous SNV 0.199 5 31 hm5C_associated_SNPs_33659 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 16bp
chr7 142458495 142458495 1 + G T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACCAGGTGTCCCTGAATTCTTGCTACCACTT < 41bp 1 0.269959300762219 1 0.0877957940101624 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458495 nonsynonymous SNV 0.199 5 31 hm5C_associated_SNPs_33659 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 71bp
chr7 142458495 142458495 1 + G T SKCM 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTACCAGGTGTCCCTGAATTCTTGCTACCACTTC < 41bp 1 0.69099440199951 1 0.330665588378906 experiment 0.61801119600098 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458495 nonsynonymous SNV 0.199 5 30 hm5C_associated_SNPs_33660 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 90bp
chr7 142458495 142458495 1 + G T SKCM 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTACCAGGTGTCCCTGAATTCTTGCTACCACTTC < 41bp 1 0.69099440199951 1 0.330665588378906 experiment 0.61801119600098 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458495 nonsynonymous SNV 0.199 5 30 hm5C_associated_SNPs_33660 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 16bp
chr7 142458495 142458495 1 + G T SKCM 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTACCAGGTGTCCCTGAATTCTTGCTACCACTTC < 41bp 1 0.69099440199951 1 0.330665588378906 experiment 0.61801119600098 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458495 nonsynonymous SNV 0.199 5 30 hm5C_associated_SNPs_33660 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 71bp
chr7 142458495 142458495 1 + G T SKCM 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG CTACCAGGTGTCCCTGAATTCTTGCTACCACTTCTGTGGTG < 41bp 1 0.457028853974601 1 0.265046298503876 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458495 nonsynonymous SNV 0.199 5 23 hm5C_associated_SNPs_33661 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 90bp
chr7 142458495 142458495 1 + G T SKCM 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG CTACCAGGTGTCCCTGAATTCTTGCTACCACTTCTGTGGTG < 41bp 1 0.457028853974601 1 0.265046298503876 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458495 nonsynonymous SNV 0.199 5 23 hm5C_associated_SNPs_33661 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 16bp
chr7 142458495 142458495 1 + G T SKCM 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG CTACCAGGTGTCCCTGAATTCTTGCTACCACTTCTGTGGTG < 41bp 1 0.457028853974601 1 0.265046298503876 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458495 nonsynonymous SNV 0.199 5 23 hm5C_associated_SNPs_33661 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 71bp
chr7 142458495 142458495 1 + G T SKCM 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTTGCTACCACTTCTGTGGTGGCTC < 41bp 1 0.0820580456962347 1 0.0390227138996124 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458495 nonsynonymous SNV 0.199 5 19 hm5C_associated_SNPs_33662 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 90bp
chr7 142458495 142458495 1 + G T SKCM 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTTGCTACCACTTCTGTGGTGGCTC < 41bp 1 0.0820580456962347 1 0.0390227138996124 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458495 nonsynonymous SNV 0.199 5 19 hm5C_associated_SNPs_33662 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 16bp
chr7 142458495 142458495 1 + G T SKCM 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTTGCTACCACTTCTGTGGTGGCTC < 41bp 1 0.0820580456962347 1 0.0390227138996124 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458495 nonsynonymous SNV 0.199 5 19 hm5C_associated_SNPs_33662 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 71bp
chr7 142458495 142458495 1 + G T SKCM 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTTGCTACCACTTCTGTGGTGGCTCCCT < 41bp 1 0.0654744737056624 1 0.0672702193260193 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458495 nonsynonymous SNV 0.199 5 16 hm5C_associated_SNPs_33663 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 90bp
chr7 142458495 142458495 1 + G T SKCM 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTTGCTACCACTTCTGTGGTGGCTCCCT < 41bp 1 0.0654744737056624 1 0.0672702193260193 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458495 nonsynonymous SNV 0.199 5 16 hm5C_associated_SNPs_33663 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 16bp
chr7 142458495 142458495 1 + G T SKCM 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTTGCTACCACTTCTGTGGTGGCTCCCT < 41bp 1 0.0654744737056624 1 0.0672702193260193 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458495 nonsynonymous SNV 0.199 5 16 hm5C_associated_SNPs_33663 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 71bp
chr7 142458495 142458495 1 + G T SKCM 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTTGCTACCACTTCTGTGGTGGCTCCCTC < 41bp 1 0.200832271108561 1 0.160844922065735 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458495 nonsynonymous SNV 0.199 5 15 hm5C_associated_SNPs_33664 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 90bp
chr7 142458495 142458495 1 + G T SKCM 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTTGCTACCACTTCTGTGGTGGCTCCCTC < 41bp 1 0.200832271108561 1 0.160844922065735 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458495 nonsynonymous SNV 0.199 5 15 hm5C_associated_SNPs_33664 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 16bp
chr7 142458495 142458495 1 + G T SKCM 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTTGCTACCACTTCTGTGGTGGCTCCCTC < 41bp 1 0.200832271108561 1 0.160844922065735 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458495 nonsynonymous SNV 0.199 5 15 hm5C_associated_SNPs_33664 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 71bp
chr7 142458495 142458495 1 + G T SKCM 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTTGCTACCACTTCTGTGGTGGCTCCCTCAT < 41bp 1 0.278492086266265 1 0.199355125427246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458495 nonsynonymous SNV 0.199 5 13 hm5C_associated_SNPs_33665 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 90bp
chr7 142458495 142458495 1 + G T SKCM 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTTGCTACCACTTCTGTGGTGGCTCCCTCAT < 41bp 1 0.278492086266265 1 0.199355125427246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458495 nonsynonymous SNV 0.199 5 13 hm5C_associated_SNPs_33665 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 16bp
chr7 142458495 142458495 1 + G T SKCM 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTTGCTACCACTTCTGTGGTGGCTCCCTCAT < 41bp 1 0.278492086266265 1 0.199355125427246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458495 nonsynonymous SNV 0.199 5 13 hm5C_associated_SNPs_33665 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 71bp
chr7 142458495 142458495 1 + G T SKCM 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTTGCTACCACTTCTGTGGTGGCTCCCTCATCAA < 41bp 1 0.604979514506804 1 0.354604482650757 experiment 0.790040970986392 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458495 nonsynonymous SNV 0.199 5 10 hm5C_associated_SNPs_33666 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 90bp
chr7 142458495 142458495 1 + G T SKCM 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTTGCTACCACTTCTGTGGTGGCTCCCTCATCAA < 41bp 1 0.604979514506804 1 0.354604482650757 experiment 0.790040970986392 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458495 nonsynonymous SNV 0.199 5 10 hm5C_associated_SNPs_33666 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 16bp
chr7 142458495 142458495 1 + G T SKCM 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTTGCTACCACTTCTGTGGTGGCTCCCTCATCAA < 41bp 1 0.604979514506804 1 0.354604482650757 experiment 0.790040970986392 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458495 nonsynonymous SNV 0.199 5 10 hm5C_associated_SNPs_33666 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 71bp
chr7 142458495 142458495 1 + G T SKCM 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG TGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG < 41bp 1 0.24317787904717 1 0.0957399308681488 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458495 nonsynonymous SNV 0.199 5 1 hm5C_associated_SNPs_33667 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 90bp
chr7 142458495 142458495 1 + G T SKCM 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG TGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG < 41bp 1 0.24317787904717 1 0.0957399308681488 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458495 nonsynonymous SNV 0.199 5 1 hm5C_associated_SNPs_33667 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 16bp
chr7 142458495 142458495 1 + G T SKCM 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG TGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG < 41bp 1 0.24317787904717 1 0.0957399308681488 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458495 nonsynonymous SNV 0.199 5 1 hm5C_associated_SNPs_33667 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 71bp
chr4 26407852 26407852 1 + C T SKCM 26407834 + 26407814 26407854 41 ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCAT ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTTAT < 41bp 1 0.296266800745056 1 0.232951402664185 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBPJ ENSG00000168214 CDS Human protein_coding chr4:26407834 chr4:26407852 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_33668 0 0 1 0 2 RBPJ chr4:26407797 3'AG 26407797 Downstream 56bp
chr4 26407852 26407852 1 + C T SKCM 26407834 + 26407814 26407854 41 ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCAT ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTTAT < 41bp 1 0.296266800745056 1 0.232951402664185 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBPJ ENSG00000168214 CDS Human protein_coding chr4:26407834 chr4:26407852 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_33668 0 0 1 0 2 RBPJ chr4:26407892 5'GT 26407892 Upstream 41bp
chr7 142458496 142458496 1 + G A SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGA < 41bp 1 0.20816379892012 1 0.347931861877441 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458496 nonsynonymous SNV 0.222 4 41 hm5C_associated_SNPs_33670 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 91bp
chr7 142458496 142458496 1 + G A SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGA < 41bp 1 0.20816379892012 1 0.347931861877441 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458496 nonsynonymous SNV 0.222 4 41 hm5C_associated_SNPs_33670 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 17bp
chr7 142458496 142458496 1 + G A SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGA < 41bp 1 0.20816379892012 1 0.347931861877441 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458496 nonsynonymous SNV 0.222 4 41 hm5C_associated_SNPs_33670 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 70bp
chr7 142458496 142458496 1 + G A SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGAC < 41bp 1 0.631880335758152 1 0.829586267471313 experiment 0.736239328483696 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458496 nonsynonymous SNV 0.222 4 40 hm5C_associated_SNPs_33671 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 91bp
chr7 142458496 142458496 1 + G A SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGAC < 41bp 1 0.631880335758152 1 0.829586267471313 experiment 0.736239328483696 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458496 nonsynonymous SNV 0.222 4 40 hm5C_associated_SNPs_33671 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 17bp
chr7 142458496 142458496 1 + G A SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGAC < 41bp 1 0.631880335758152 1 0.829586267471313 experiment 0.736239328483696 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458496 nonsynonymous SNV 0.222 4 40 hm5C_associated_SNPs_33671 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 70bp
chr7 142458496 142458496 1 + G A SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGACTACCACT < 41bp 1 0.103205104471937 1 0.0518153309822083 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458496 nonsynonymous SNV 0.222 4 33 hm5C_associated_SNPs_33672 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 91bp
chr7 142458496 142458496 1 + G A SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGACTACCACT < 41bp 1 0.103205104471937 1 0.0518153309822083 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458496 nonsynonymous SNV 0.222 4 33 hm5C_associated_SNPs_33672 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 17bp
chr7 142458496 142458496 1 + G A SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGACTACCACT < 41bp 1 0.103205104471937 1 0.0518153309822083 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458496 nonsynonymous SNV 0.222 4 33 hm5C_associated_SNPs_33672 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 70bp
chr7 142458496 142458496 1 + G A SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACCAGGTGTCCCTGAATTCTGACTACCACTT < 41bp 1 0.29639486359086 1 0.10324028134346 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458496 nonsynonymous SNV 0.222 4 32 hm5C_associated_SNPs_33673 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 91bp
chr7 142458496 142458496 1 + G A SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACCAGGTGTCCCTGAATTCTGACTACCACTT < 41bp 1 0.29639486359086 1 0.10324028134346 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458496 nonsynonymous SNV 0.222 4 32 hm5C_associated_SNPs_33673 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 17bp
chr7 142458496 142458496 1 + G A SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACCAGGTGTCCCTGAATTCTGACTACCACTT < 41bp 1 0.29639486359086 1 0.10324028134346 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458496 nonsynonymous SNV 0.222 4 32 hm5C_associated_SNPs_33673 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 70bp
chr7 142458496 142458496 1 + G A SKCM 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTACCAGGTGTCCCTGAATTCTGACTACCACTTC < 41bp 1 0.74858240035993 1 0.527825534343719 experiment 0.502835199280141 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458496 nonsynonymous SNV 0.222 4 31 hm5C_associated_SNPs_33674 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 91bp
chr7 142458496 142458496 1 + G A SKCM 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTACCAGGTGTCCCTGAATTCTGACTACCACTTC < 41bp 1 0.74858240035993 1 0.527825534343719 experiment 0.502835199280141 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458496 nonsynonymous SNV 0.222 4 31 hm5C_associated_SNPs_33674 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 17bp
chr7 142458496 142458496 1 + G A SKCM 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTACCAGGTGTCCCTGAATTCTGACTACCACTTC < 41bp 1 0.74858240035993 1 0.527825534343719 experiment 0.502835199280141 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458496 nonsynonymous SNV 0.222 4 31 hm5C_associated_SNPs_33674 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 70bp
chr7 142458496 142458496 1 + G A SKCM 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG CTACCAGGTGTCCCTGAATTCTGACTACCACTTCTGTGGTG < 41bp 1 0.558419176066558 1 0.478073567152023 experiment 0.883161647866883 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458496 nonsynonymous SNV 0.222 4 24 hm5C_associated_SNPs_33675 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 91bp
chr7 142458496 142458496 1 + G A SKCM 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG CTACCAGGTGTCCCTGAATTCTGACTACCACTTCTGTGGTG < 41bp 1 0.558419176066558 1 0.478073567152023 experiment 0.883161647866883 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458496 nonsynonymous SNV 0.222 4 24 hm5C_associated_SNPs_33675 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 17bp
chr7 142458496 142458496 1 + G A SKCM 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG CTACCAGGTGTCCCTGAATTCTGACTACCACTTCTGTGGTG < 41bp 1 0.558419176066558 1 0.478073567152023 experiment 0.883161647866883 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458496 nonsynonymous SNV 0.222 4 24 hm5C_associated_SNPs_33675 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 70bp
chr7 142458496 142458496 1 + G A SKCM 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTGACTACCACTTCTGTGGTGGCTC < 41bp 1 0.0795824531327168 1 0.0152190327644348 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458496 nonsynonymous SNV 0.222 4 20 hm5C_associated_SNPs_33676 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 91bp
chr7 142458496 142458496 1 + G A SKCM 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTGACTACCACTTCTGTGGTGGCTC < 41bp 1 0.0795824531327168 1 0.0152190327644348 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458496 nonsynonymous SNV 0.222 4 20 hm5C_associated_SNPs_33676 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 17bp
chr7 142458496 142458496 1 + G A SKCM 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTGACTACCACTTCTGTGGTGGCTC < 41bp 1 0.0795824531327168 1 0.0152190327644348 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458496 nonsynonymous SNV 0.222 4 20 hm5C_associated_SNPs_33676 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 70bp
chr7 142458496 142458496 1 + G A SKCM 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTGACTACCACTTCTGTGGTGGCTCCCT < 41bp 1 0.0774220025343229 1 0.0876059234142303 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458496 nonsynonymous SNV 0.222 4 17 hm5C_associated_SNPs_33677 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 91bp
chr7 142458496 142458496 1 + G A SKCM 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTGACTACCACTTCTGTGGTGGCTCCCT < 41bp 1 0.0774220025343229 1 0.0876059234142303 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458496 nonsynonymous SNV 0.222 4 17 hm5C_associated_SNPs_33677 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 17bp
chr7 142458496 142458496 1 + G A SKCM 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTGACTACCACTTCTGTGGTGGCTCCCT < 41bp 1 0.0774220025343229 1 0.0876059234142303 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458496 nonsynonymous SNV 0.222 4 17 hm5C_associated_SNPs_33677 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 70bp
chr7 142458496 142458496 1 + G A SKCM 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGACTACCACTTCTGTGGTGGCTCCCTC < 41bp 1 0.191330672384456 1 0.406157404184341 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458496 nonsynonymous SNV 0.222 4 16 hm5C_associated_SNPs_33678 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 91bp
chr7 142458496 142458496 1 + G A SKCM 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGACTACCACTTCTGTGGTGGCTCCCTC < 41bp 1 0.191330672384456 1 0.406157404184341 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458496 nonsynonymous SNV 0.222 4 16 hm5C_associated_SNPs_33678 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 17bp
chr7 142458496 142458496 1 + G A SKCM 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGACTACCACTTCTGTGGTGGCTCCCTC < 41bp 1 0.191330672384456 1 0.406157404184341 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458496 nonsynonymous SNV 0.222 4 16 hm5C_associated_SNPs_33678 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 70bp
chr7 142458496 142458496 1 + G A SKCM 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGACTACCACTTCTGTGGTGGCTCCCTCAT < 41bp 1 0.264415114474739 1 0.324322044849396 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458496 nonsynonymous SNV 0.222 4 14 hm5C_associated_SNPs_33679 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 91bp
chr7 142458496 142458496 1 + G A SKCM 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGACTACCACTTCTGTGGTGGCTCCCTCAT < 41bp 1 0.264415114474739 1 0.324322044849396 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458496 nonsynonymous SNV 0.222 4 14 hm5C_associated_SNPs_33679 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 17bp
chr7 142458496 142458496 1 + G A SKCM 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGACTACCACTTCTGTGGTGGCTCCCTCAT < 41bp 1 0.264415114474739 1 0.324322044849396 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458496 nonsynonymous SNV 0.222 4 14 hm5C_associated_SNPs_33679 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 70bp
chr7 142458496 142458496 1 + G A SKCM 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGACTACCACTTCTGTGGTGGCTCCCTCATCAA < 41bp 1 0.603945325903224 1 0.270496964454651 experiment 0.792109348193551 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458496 nonsynonymous SNV 0.222 4 11 hm5C_associated_SNPs_33680 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 91bp
chr7 142458496 142458496 1 + G A SKCM 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGACTACCACTTCTGTGGTGGCTCCCTCATCAA < 41bp 1 0.603945325903224 1 0.270496964454651 experiment 0.792109348193551 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458496 nonsynonymous SNV 0.222 4 11 hm5C_associated_SNPs_33680 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 17bp
chr7 142458496 142458496 1 + G A SKCM 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGACTACCACTTCTGTGGTGGCTCCCTCATCAA < 41bp 1 0.603945325903224 1 0.270496964454651 experiment 0.792109348193551 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458496 nonsynonymous SNV 0.222 4 11 hm5C_associated_SNPs_33680 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 70bp
chr7 142458496 142458496 1 + G A SKCM 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GACTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG < 41bp 1 0.249740580581814 1 0.144561231136322 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458496 nonsynonymous SNV 0.222 4 2 hm5C_associated_SNPs_33681 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 91bp
chr7 142458496 142458496 1 + G A SKCM 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GACTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG < 41bp 1 0.249740580581814 1 0.144561231136322 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458496 nonsynonymous SNV 0.222 4 2 hm5C_associated_SNPs_33681 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 17bp
chr7 142458496 142458496 1 + G A SKCM 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GACTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG < 41bp 1 0.249740580581814 1 0.144561231136322 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458496 nonsynonymous SNV 0.222 4 2 hm5C_associated_SNPs_33681 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 70bp
chr2 100007159 100007159 1 + A G SKCM 100007146 + 100007126 100007166 41 AGGCCTCCTGTTACCTCCTCCTATGAAGGAATTACGAGTGA AGGCCTCCTGTTACCTCCTCCTATGAAGGAATTGCGAGTGA < 41bp 1 0.355852970150097 1 0.210920929908752 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:100007146 chr2:100007159 synonymous SNV . 0 34 hm5C_associated_SNPs_33684 0 0 1 0 1 EIF5B chr2:100007168 5'GT 100007168 Upstream 10bp
chr3 184042684 184042684 1 + C T SKCM 184042675 + 184042655 184042695 41 GTGAATGGCAGGCAGAGGAACGAGGACGCCTGAAGGAAGAG GTGAATGGCAGGCAGAGGAACGAGGACGCTTGAAGGAAGAG < 41bp 1 0.54299121745951 1 0.524377405643463 experiment 0.914017565080981 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042675 chr3:184042684 synonymous SNV . 0 30 hm5C_associated_SNPs_33685 0 0 1 0 1 EIF4G1 chr3:184042666 3'AG 184042666 Downstream 19bp
chr3 184042684 184042684 1 + C T SKCM 184042681 + 184042661 184042701 41 GGCAGGCAGAGGAACGAGGACGCCTGAAGGAAGAGCTGGAA GGCAGGCAGAGGAACGAGGACGCTTGAAGGAAGAGCTGGAA < 41bp 1 0.283301543791533 1 0.426403135061264 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042681 chr3:184042684 synonymous SNV . 0 24 hm5C_associated_SNPs_33686 0 0 1 0 1 EIF4G1 chr3:184042666 3'AG 184042666 Downstream 19bp
chr2 28999786 28999786 1 + C A SKCM 28999796 + 28999776 28999816 41 TGTATCAAGTCTCGGGAGATCTTTCTCAGCCAGCCTATTCT TGTATCAAGTATCGGGAGATCTTTCTCAGCCAGCCTATTCT < 41bp 1 0.1232323012588 1 0.0834178328514099 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1CB ENSG00000213639 CDS Human protein_coding chr2:28999796 chr2:28999786 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_33688 0 0 1 0 2 PPP1CB chr2:28999717 3'AG 28999717 Downstream 70bp
chr2 28999786 28999786 1 + C A SKCM 28999796 + 28999776 28999816 41 TGTATCAAGTCTCGGGAGATCTTTCTCAGCCAGCCTATTCT TGTATCAAGTATCGGGAGATCTTTCTCAGCCAGCCTATTCT < 41bp 1 0.1232323012588 1 0.0834178328514099 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1CB ENSG00000213639 CDS Human protein_coding chr2:28999796 chr2:28999786 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_33688 0 0 1 0 2 PPP1CB chr2:28999848 5'GT 28999848 Upstream 63bp
chr2 85598230 85598230 1 + C T SKCM 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTTGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT < 41bp 1 0.384008093594418 1 0.4549500644207 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598230 stopgain 0.985 1 5 hm5C_associated_SNPs_33691 0 0 1 0 1 ELMOD3 chr2:85598209 3'AG 85598209 Downstream 22bp
chr14 76112819 76112819 1 + G A SKCM 76112807 + 76112787 76112827 41 CCACTGCTGTGTCAGAGGATCATCTCTGAGAGGAAGGTGGT CCACTGCTGTGTCAGAGGATCATCTCTGAGAGAAAGGTGGT < 41bp 1 0.116938744602964 1 0.0667169094085693 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76112807 chr14:76112819 nonsynonymous SNV 0.261 1 33 hm5C_associated_SNPs_33692 0 0 0 3 1 FLVCR2 chr14:76112744 3'AG 76112744 Downstream 76bp
chr19 3527686 3527686 1 + C T SKCM 3527693 + 3527673 3527713 41 CCAAGATCCCCTTCAAGGTGCTGGACGCGCCCGAGCTGCAG CCAAGATCCCCTTTAAGGTGCTGGACGCGCCCGAGCTGCAG < 41bp 1 0.722501687619178 1 0.460016906261444 experiment 0.554996624761645 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3527693 chr19:3527686 synonymous SNV . 0 14 hm5C_associated_SNPs_33693 0 0 0 0 1 FZR1 chr19:3527629 3'AG 3527629 Downstream 58bp
chr4 166254685 166254685 1 + C T SKCM 166254694 + 166254674 166254714 41 CATGGGGATCCCTTATAGTTCATGAAGCCCTTTATTTCTTA CATGGGGATCCTTTATAGTTCATGAAGCCCTTTATTTCTTA < 41bp 1 0.560761944062702 1 0.100223928689957 experiment 0.878476111874597 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MSMO1 ENSG00000052802 CDS Human protein_coding chr4:166254694 chr4:166254685 nonsynonymous SNV 0.976 1 12 hm5C_associated_SNPs_33694 0 0 1 0 1 MSMO1 chr4:166254777 5'GT 166254777 Upstream 93bp
chr22 42032201 42032201 1 + A G SKCM 42032200 + 42032180 42032220 41 TTCTATGGTACCGAGAAAGACAAAAATTCAGTGAATTTTAA TTCTATGGTACCGAGAAAGACGAAAATTCAGTGAATTTTAA < 41bp 1 0.564447253631271 1 0.224667459726334 experiment 0.871105492737459 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42032200 chr22:42032201 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_33700 0 0 1 0 1 XRCC6 chr22:42032255 5'GT 42032255 Upstream 55bp
chr22 32889265 32889265 1 + C T SKCM 32889253 + 32889233 32889273 41 TCCTGTGGAGGTTTTTATATCTGCGTGATTTTCGAGGTGAT TCCTGTGGAGGTTTTTATATCTGCGTGATTTTTGAGGTGAT < 41bp 1 0.576965919047658 1 0.609486818313599 experiment 0.846068161904685 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32889253 chr22:32889265 stopgain 1.000 1 33 hm5C_associated_SNPs_33701 0 0 1 0 1 FBXO7 chr22:32889268 5'GT 32889268 Upstream 4bp
chr17 73728000 73728000 1 + C T SKCM 73727993 + 73727973 73728013 41 CAACATCCATCTGAAACCTTCCTTCTCCGACGGCCTCAAGA CAACATCCATCTGAAACCTTCCTTCTCTGACGGCCTCAAGA < 41bp 1 0.00577801905163187 1 0.0167173147201538 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73727993 chr17:73728000 synonymous SNV . 0 28 hm5C_associated_SNPs_33702 0 0 0 0 1 ITGB4 chr17:73728054 5'GT 73728054 Upstream 55bp
chr4 41262675 41262675 1 + C T SKCM 41262672 + 41262652 41262692 41 TTACATTCGCAGCATGAGAACTTCAGGAAAAAGCAGATTGA TTACATTCGCAGCATGAGAACTTTAGGAAAAAGCAGATTGA < 41bp 1 0.246824967156056 1 0.108371794223785 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UCHL1 ENSG00000154277 CDS Human protein_coding chr4:41262672 chr4:41262675 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_33704 0 0 1 0 1 UCHL1 chr4:41262664 3'AG 41262664 Downstream 12bp
chrX 103434387 103434387 1 + C T SKCM 103434382 + 103434362 103434402 41 GGAAGGAGAGGCTCAGTGGGCTCTTCCTTAACGAAGAGGTG GGAAGGAGAGGCTCAGTGGGCTCTTTCTTAACGAAGAGGTG < 41bp 1 0.332664305815344 1 0.0769754648208618 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAM199X ENSG00000123575 CDS Human protein_coding chrX:103434382 chrX:103434387 synonymous SNV . 0 26 hm5C_associated_SNPs_33705 0 0 1 0 1 FAM199X chrX:103434289 3'AG 103434289 Downstream 99bp
chr11 65978611 65978611 1 + C T SKCM 65978630 + 65978610 65978650 41 TCATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGC TTATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGC < 41bp 1 0.0102513384464544 1 0.063933402299881 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978630 chr11:65978611 nonsynonymous SNV 0.996 3 2 hm5C_associated_SNPs_33706 0 0 1 0 1 PACS1 chr11:65978605 3'AG 65978605 Downstream 7bp
chr11 65978611 65978611 1 + C T SKCM 65978631 + 65978611 65978651 41 CATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGCT TATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGCT < 41bp 1 0.303388110610894 1 0.453344762325287 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978631 chr11:65978611 nonsynonymous SNV 0.996 3 1 hm5C_associated_SNPs_33707 0 0 1 0 1 PACS1 chr11:65978605 3'AG 65978605 Downstream 7bp
chr17 4905816 4905816 1 + C T SKCM 4905833 + 4905813 4905853 41 AGTCGGGGTTCTCTGCGGGTCCGGGAGCACCCCATCCTGGG AGTTGGGGTTCTCTGCGGGTCCGGGAGCACCCCATCCTGGG < 41bp 1 0.525677881729406 1 0.685210764408112 experiment 0.948644236541187 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905833 chr17:4905816 nonsynonymous SNV 0.999 3 4 hm5C_associated_SNPs_33708 0 0 1 0 1 KIF1C chr17:4905759 3'AG 4905759 Downstream 58bp
chr4 3224155 3224155 1 + C T SKCM 3224157 + 3224137 3224177 41 GAAGAAACTTGGGCCACCCTCCTTGGTGTCCTGGTGACGCA GAAGAAACTTGGGCCACCTTCCTTGGTGTCCTGGTGACGCA < 41bp 1 0.0711214580364787 1 0.474665224552155 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3224157 chr4:3224155 nonsynonymous SNV 0.987 3 19 hm5C_associated_SNPs_33709 0 0 1 0 2 HTT chr4:3224114 3'AG 3224114 Downstream 42bp
chr4 3224155 3224155 1 + C T SKCM 3224157 + 3224137 3224177 41 GAAGAAACTTGGGCCACCCTCCTTGGTGTCCTGGTGACGCA GAAGAAACTTGGGCCACCTTCCTTGGTGTCCTGGTGACGCA < 41bp 1 0.0711214580364787 1 0.474665224552155 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3224157 chr4:3224155 nonsynonymous SNV 0.987 3 19 hm5C_associated_SNPs_33709 0 0 1 0 2 HTT chr4:3224214 5'GT 3224214 Upstream 60bp
chrX 70519861 70519861 1 + C T SKCM 70519864 + 70519844 70519884 41 GGGCAATTGGTGGAACTCCTCCTGCATTCAACCGTGCAGCT GGGCAATTGGTGGAACTTCTCCTGCATTCAACCGTGCAGCT < 41bp 1 0.316516648021976 1 0.341029286384583 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70519864 chrX:70519861 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_33710 0 0 1 0 1 NONO chrX:70519792 3'AG 70519792 Downstream 70bp
chr1 22332203 22332203 1 + G A SKCM 22332191 + 22332171 22332211 41 CAGGTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGG CAGGTGGTGTTGGGTGAGTACAACCTTGCTGTAAAGGAGGG < 41bp 1 0.396648770601445 1 0.351978242397308 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332191 chr1:22332203 synonymous SNV . 0 33 hm5C_associated_SNPs_33711 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 49bp
chr1 22332203 22332203 1 + G A SKCM 22332191 + 22332171 22332211 41 CAGGTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGG CAGGTGGTGTTGGGTGAGTACAACCTTGCTGTAAAGGAGGG < 41bp 1 0.396648770601445 1 0.351978242397308 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332191 chr1:22332203 synonymous SNV . 0 33 hm5C_associated_SNPs_33711 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 87bp
chr1 22332203 22332203 1 + G A SKCM 22332194 + 22332174 22332214 41 GTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCC GTGGTGTTGGGTGAGTACAACCTTGCTGTAAAGGAGGGCCC < 41bp 1 0.118461931119164 1 0.230913281440735 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332194 chr1:22332203 synonymous SNV . 0 30 hm5C_associated_SNPs_33712 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 49bp
chr1 22332203 22332203 1 + G A SKCM 22332194 + 22332174 22332214 41 GTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCC GTGGTGTTGGGTGAGTACAACCTTGCTGTAAAGGAGGGCCC < 41bp 1 0.118461931119164 1 0.230913281440735 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332194 chr1:22332203 synonymous SNV . 0 30 hm5C_associated_SNPs_33712 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 87bp
chr1 22332203 22332203 1 + G A SKCM 22332195 + 22332175 22332215 41 TGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCC TGGTGTTGGGTGAGTACAACCTTGCTGTAAAGGAGGGCCCC < 41bp 1 0.540094016426787 1 0.15644645690918 experiment 0.919811967146426 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332195 chr1:22332203 synonymous SNV . 0 29 hm5C_associated_SNPs_33713 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 49bp
chr1 22332203 22332203 1 + G A SKCM 22332195 + 22332175 22332215 41 TGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCC TGGTGTTGGGTGAGTACAACCTTGCTGTAAAGGAGGGCCCC < 41bp 1 0.540094016426787 1 0.15644645690918 experiment 0.919811967146426 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332195 chr1:22332203 synonymous SNV . 0 29 hm5C_associated_SNPs_33713 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 87bp
chr1 22332203 22332203 1 + G A SKCM 22332199 + 22332179 22332219 41 GTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCCGAGC GTTGGGTGAGTACAACCTTGCTGTAAAGGAGGGCCCCGAGC < 41bp 1 0.741897935475469 1 0.325816929340363 experiment 0.516204129049063 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332199 chr1:22332203 synonymous SNV . 0 25 hm5C_associated_SNPs_33714 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 49bp
chr1 22332203 22332203 1 + G A SKCM 22332199 + 22332179 22332219 41 GTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCCGAGC GTTGGGTGAGTACAACCTTGCTGTAAAGGAGGGCCCCGAGC < 41bp 1 0.741897935475469 1 0.325816929340363 experiment 0.516204129049063 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332199 chr1:22332203 synonymous SNV . 0 25 hm5C_associated_SNPs_33714 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 87bp
chr1 22332203 22332203 1 + G A SKCM 22332212 + 22332192 22332232 41 AACCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT AACCTTGCTGTAAAGGAGGGCCCCGAGCAGGTGATCCCCAT < 41bp 1 0.24851497706376 1 0.097885936498642 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332212 chr1:22332203 synonymous SNV . 0 12 hm5C_associated_SNPs_33715 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 49bp
chr1 22332203 22332203 1 + G A SKCM 22332212 + 22332192 22332232 41 AACCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT AACCTTGCTGTAAAGGAGGGCCCCGAGCAGGTGATCCCCAT < 41bp 1 0.24851497706376 1 0.097885936498642 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332212 chr1:22332203 synonymous SNV . 0 12 hm5C_associated_SNPs_33715 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 87bp
chr1 22332203 22332203 1 + G A SKCM 22332213 + 22332193 22332233 41 ACCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC ACCTTGCTGTAAAGGAGGGCCCCGAGCAGGTGATCCCCATC < 41bp 1 0.676091084986992 1 0.267620027065277 experiment 0.647817830026016 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332213 chr1:22332203 synonymous SNV . 0 11 hm5C_associated_SNPs_33716 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 49bp
chr1 22332203 22332203 1 + G A SKCM 22332213 + 22332193 22332233 41 ACCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC ACCTTGCTGTAAAGGAGGGCCCCGAGCAGGTGATCCCCATC < 41bp 1 0.676091084986992 1 0.267620027065277 experiment 0.647817830026016 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332213 chr1:22332203 synonymous SNV . 0 11 hm5C_associated_SNPs_33716 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 87bp
chr1 22332203 22332203 1 + G A SKCM 22332214 + 22332194 22332234 41 CCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA CCTTGCTGTAAAGGAGGGCCCCGAGCAGGTGATCCCCATCA < 41bp 1 0.495541355107996 1 0.180873036384583 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332214 chr1:22332203 synonymous SNV . 0 10 hm5C_associated_SNPs_33717 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 49bp
chr1 22332203 22332203 1 + G A SKCM 22332214 + 22332194 22332234 41 CCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA CCTTGCTGTAAAGGAGGGCCCCGAGCAGGTGATCCCCATCA < 41bp 1 0.495541355107996 1 0.180873036384583 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332214 chr1:22332203 synonymous SNV . 0 10 hm5C_associated_SNPs_33717 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 87bp
chr1 22332203 22332203 1 + G A SKCM 22332215 + 22332195 22332235 41 CTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA CTTGCTGTAAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA < 41bp 1 0.66233633887501 1 0.269422143697739 experiment 0.675327322249981 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332215 chr1:22332203 synonymous SNV . 0 9 hm5C_associated_SNPs_33718 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 49bp
chr1 22332203 22332203 1 + G A SKCM 22332215 + 22332195 22332235 41 CTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA CTTGCTGTAAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA < 41bp 1 0.66233633887501 1 0.269422143697739 experiment 0.675327322249981 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332215 chr1:22332203 synonymous SNV . 0 9 hm5C_associated_SNPs_33718 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 87bp
chr19 49090502 49090502 1 + C T SKCM 49090493 + 49090473 49090513 41 TTTCTCCCAACAGGCACGACCTGGATGATCGAGATCATCTG TTTCTCCCAACAGGCACGACCTGGATGATTGAGATCATCTG < 41bp 1 0.795421388432734 1 0.706452250480652 experiment 0.409157223134532 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49090493 chr19:49090502 synonymous SNV . 0 30 hm5C_associated_SNPs_33719 0 0 0 0 1 SULT2B1 chr19:49090486 3'AG 49090486 Downstream 17bp
chr7 73731909 73731909 1 + C T SKCM 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AAGCCCAGCGGCCTGAAGCCCCCCGGTCGTGGGGGGAAGCA < 41bp 1 0.32882033943028 1 0.143652409315109 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731909 synonymous SNV . 0 27 hm5C_associated_SNPs_33720 0 0 0 0 2 CLIP2 chr7:73731810 3'AG 73731810 Downstream 100bp
chr7 73731909 73731909 1 + C T SKCM 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AAGCCCAGCGGCCTGAAGCCCCCCGGTCGTGGGGGGAAGCA < 41bp 1 0.32882033943028 1 0.143652409315109 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731909 synonymous SNV . 0 27 hm5C_associated_SNPs_33720 0 0 0 0 2 CLIP2 chr7:73731997 5'GT 73731997 Upstream 89bp
chr7 73731909 73731909 1 + C T SKCM 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC AGCCCAGCGGCCTGAAGCCCCCCGGTCGTGGGGGGAAGCAC < 41bp 1 0.485084077089742 1 0.145129054784775 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731909 synonymous SNV . 0 26 hm5C_associated_SNPs_33721 0 0 0 0 2 CLIP2 chr7:73731810 3'AG 73731810 Downstream 100bp
chr7 73731909 73731909 1 + C T SKCM 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC AGCCCAGCGGCCTGAAGCCCCCCGGTCGTGGGGGGAAGCAC < 41bp 1 0.485084077089742 1 0.145129054784775 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731909 synonymous SNV . 0 26 hm5C_associated_SNPs_33721 0 0 0 0 2 CLIP2 chr7:73731997 5'GT 73731997 Upstream 89bp
chr7 73731909 73731909 1 + C T SKCM 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT GCCCAGCGGCCTGAAGCCCCCCGGTCGTGGGGGGAAGCACT < 41bp 1 0.232266096717218 1 0.346776902675629 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731909 synonymous SNV . 0 25 hm5C_associated_SNPs_33722 0 0 0 0 2 CLIP2 chr7:73731810 3'AG 73731810 Downstream 100bp
chr7 73731909 73731909 1 + C T SKCM 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT GCCCAGCGGCCTGAAGCCCCCCGGTCGTGGGGGGAAGCACT < 41bp 1 0.232266096717218 1 0.346776902675629 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731909 synonymous SNV . 0 25 hm5C_associated_SNPs_33722 0 0 0 0 2 CLIP2 chr7:73731997 5'GT 73731997 Upstream 89bp
chr7 73731909 73731909 1 + C T SKCM 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC CCCAGCGGCCTGAAGCCCCCCGGTCGTGGGGGGAAGCACTC < 41bp 1 0.218274123238498 1 0.329267799854279 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731909 synonymous SNV . 0 24 hm5C_associated_SNPs_33723 0 0 0 0 2 CLIP2 chr7:73731810 3'AG 73731810 Downstream 100bp
chr7 73731909 73731909 1 + C T SKCM 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC CCCAGCGGCCTGAAGCCCCCCGGTCGTGGGGGGAAGCACTC < 41bp 1 0.218274123238498 1 0.329267799854279 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731909 synonymous SNV . 0 24 hm5C_associated_SNPs_33723 0 0 0 0 2 CLIP2 chr7:73731997 5'GT 73731997 Upstream 89bp
chr11 61897294 61897294 1 + C A SKCM 61897299 + 61897279 61897319 41 AGCCAGCTGAGCTCCCGACGCCTCCGCAGCAAGGACAGTGT AGCCAGCTGAGCTCCAGACGCCTCCGCAGCAAGGACAGTGT < 41bp 1 0.0521180913671409 1 0.11842405796051 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61897299 chr11:61897294 synonymous SNV . 0 16 hm5C_associated_SNPs_33724 0 0 1 0 1 INCENP chr11:61897254 3'AG 61897254 Downstream 41bp
chr20 62366600 62366600 1 + C T SKCM 62366599 + 62366579 62366619 41 CTGGACCAGTGTGTGGAGACCCTGCAGAAGCAGACCAGGGT CTGGACCAGTGTGTGGAGACCTTGCAGAAGCAGACCAGGGT < 41bp 1 0.176310377144048 1 0.301807403564453 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZGPAT ENSG00000197114;ENSG00000273154 CDS Human other chr20:62366599 chr20:62366600 synonymous SNV . 0 22 hm5C_associated_SNPs_33725 0 0 1 0 2 ZGPAT chr20:62366511 3'AG 62366511 Downstream 90bp
chr20 62366600 62366600 1 + C T SKCM 62366599 + 62366579 62366619 41 CTGGACCAGTGTGTGGAGACCCTGCAGAAGCAGACCAGGGT CTGGACCAGTGTGTGGAGACCTTGCAGAAGCAGACCAGGGT < 41bp 1 0.176310377144048 1 0.301807403564453 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZGPAT ENSG00000197114;ENSG00000273154 CDS Human other chr20:62366599 chr20:62366600 synonymous SNV . 0 22 hm5C_associated_SNPs_33725 0 0 1 0 2 ZGPAT chr20:62366588 3'AG 62366588 Downstream 13bp
chr9 37424932 37424932 1 + C T SKCM 37424937 + 37424917 37424957 41 CGGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAGGA CGGCCTGCTCTGCCTTCTCTCCGACCACGTGGACAAGAGGA < 41bp 1 0.205745004937278 1 0.756447553634644 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424937 chr9:37424932 synonymous SNV . 0 16 hm5C_associated_SNPs_33727 0 0 1 0 2 GRHPR chr9:37424842 3'AG 37424842 Downstream 91bp
chr9 37424932 37424932 1 + C T SKCM 37424937 + 37424917 37424957 41 CGGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAGGA CGGCCTGCTCTGCCTTCTCTCCGACCACGTGGACAAGAGGA < 41bp 1 0.205745004937278 1 0.756447553634644 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424937 chr9:37424932 synonymous SNV . 0 16 hm5C_associated_SNPs_33727 0 0 1 0 2 GRHPR chr9:37424972 5'GT 37424972 Upstream 41bp
chr9 37424932 37424932 1 + C T SKCM 37424938 + 37424918 37424958 41 GGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAGGAT GGCCTGCTCTGCCTTCTCTCCGACCACGTGGACAAGAGGAT < 41bp 1 0.283754780856254 1 0.282757639884949 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424938 chr9:37424932 synonymous SNV . 0 15 hm5C_associated_SNPs_33728 0 0 1 0 2 GRHPR chr9:37424842 3'AG 37424842 Downstream 91bp
chr9 37424932 37424932 1 + C T SKCM 37424938 + 37424918 37424958 41 GGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAGGAT GGCCTGCTCTGCCTTCTCTCCGACCACGTGGACAAGAGGAT < 41bp 1 0.283754780856254 1 0.282757639884949 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424938 chr9:37424932 synonymous SNV . 0 15 hm5C_associated_SNPs_33728 0 0 1 0 2 GRHPR chr9:37424972 5'GT 37424972 Upstream 41bp
chr2 220350093 220350093 1 + C T SKCM 220350113 + 220350093 220350133 41 CCGCTGGGGCTTCTCTCGGCCGCGGAAGGACAAGGGGTTAT TCGCTGGGGCTTCTCTCGGCCGCGGAAGGACAAGGGGTTAT < 41bp 1 0.446530280970229 1 0.667911171913147 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220350113 chr2:220350093 synonymous SNV . 0 1 hm5C_associated_SNPs_33729 0 0 0 0 1 SPEG chr2:220350068 3'AG 220350068 Downstream 26bp
chr19 30313211 30313211 1 + C T SKCM 30313222 + 30313202 30313242 41 TTGCTGCTTCGGCCTTGTATCATTTCTCGTCATCTGAATTG TTGCTGCTTTGGCCTTGTATCATTTCTCGTCATCTGAATTG < 41bp 1 0.0817469374303346 1 0.0634353756904602 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30313222 chr19:30313211 nonsynonymous SNV 0.990 4 10 hm5C_associated_SNPs_33730 0 0 1 0 2 CCNE1 chr19:30313147 3'AG 30313147 Downstream 65bp
chr19 30313211 30313211 1 + C T SKCM 30313222 + 30313202 30313242 41 TTGCTGCTTCGGCCTTGTATCATTTCTCGTCATCTGAATTG TTGCTGCTTTGGCCTTGTATCATTTCTCGTCATCTGAATTG < 41bp 1 0.0817469374303346 1 0.0634353756904602 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30313222 chr19:30313211 nonsynonymous SNV 0.990 4 10 hm5C_associated_SNPs_33730 0 0 1 0 2 CCNE1 chr19:30313258 5'GT 30313258 Upstream 48bp
chr17 48757187 48757187 1 + G A SKCM 48757176 + 48757156 48757196 41 CAGGTGACATTTGCTCTGAACTGGATGATACGAATGATGTC CAGGTGACATTTGCTCTGAACTGGATGATACAAATGATGTC < 41bp 1 0.559047301602896 1 0.304243147373199 experiment 0.881905396794209 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48757176 chr17:48757187 nonsynonymous SNV 0.922 4 32 hm5C_associated_SNPs_33731 0 0 0 0 2 ABCC3 chr17:48757159 3'AG 48757159 Downstream 29bp
chr17 48757187 48757187 1 + G A SKCM 48757176 + 48757156 48757196 41 CAGGTGACATTTGCTCTGAACTGGATGATACGAATGATGTC CAGGTGACATTTGCTCTGAACTGGATGATACAAATGATGTC < 41bp 1 0.559047301602896 1 0.304243147373199 experiment 0.881905396794209 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48757176 chr17:48757187 nonsynonymous SNV 0.922 4 32 hm5C_associated_SNPs_33731 0 0 0 0 2 ABCC3 chr17:48757260 5'GT 48757260 Upstream 74bp
chr15 22969327 22969327 1 + C T SKCM 22969313 + 22969293 22969333 41 CCCTGCACGTCTTCTGGGAGCTCAACTATGACTTCCTGCCC CCCTGCACGTCTTCTGGGAGCTCAACTATGACTTTCTGCCC < 41bp 1 0.631075303087133 1 0.33547455072403 experiment 0.737849393825734 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22969313 chr15:22969327 synonymous SNV . 0 35 hm5C_associated_SNPs_33732 0 0 1 0 1 CYFIP1 chr15:22969362 5'GT 22969362 Upstream 36bp
chr2 220097283 220097283 1 + C T SKCM 220097293 + 220097273 220097313 41 GACACTGGATCGGGAGAGGGCTACATTTGAGAAGTTGAGCC GACACTGGATTGGGAGAGGGCTACATTTGAGAAGTTGAGCC < 41bp 1 0.772137934418265 1 0.865075945854187 experiment 0.455724131163469 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220097293 chr2:220097283 nonsynonymous SNV 0.850 2 11 hm5C_associated_SNPs_33733 0 0 1 0 1 ANKZF1 chr2:220097212 3'AG 220097212 Downstream 72bp
chr10 122664262 122664262 1 + C T SKCM 122664258 + 122664238 122664278 41 AGTCACTACTGTCACCTCGTCAGGCCCCTCTCAGAGCACCA AGTCACTACTGTCACCTCGTCAGGTCCCTCTCAGAGCACCA < 41bp 1 0.414513716332489 1 0.714253664016724 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122664258 chr10:122664262 synonymous SNV . 0 25 hm5C_associated_SNPs_33735 0 0 1 0 1 WDR11 chr10:122664323 5'GT 122664323 Upstream 62bp
chr19 14562690 14562690 1 + C T SKCM 14562705 + 14562685 14562725 41 ACCATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGG ACCATTCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGG < 41bp 1 0.143544881631491 1 0.0936664044857025 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562705 chr19:14562690 synonymous SNV . 0 6 hm5C_associated_SNPs_33736 0 0 1 0 1 PKN1 chr19:14562641 3'AG 14562641 Downstream 50bp
chr19 14562690 14562690 1 + C T SKCM 14562706 + 14562686 14562726 41 CCATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGGG CCATTCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGGG < 41bp 1 0.0496035855491472 1 0.200629860162735 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562706 chr19:14562690 synonymous SNV . 0 5 hm5C_associated_SNPs_33737 0 0 1 0 1 PKN1 chr19:14562641 3'AG 14562641 Downstream 50bp
chr19 14562690 14562690 1 + C T SKCM 14562708 + 14562688 14562728 41 ATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGGGAC ATTCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGGGAC < 41bp 1 0.722376859404976 1 0.93104612827301 experiment 0.555246281190049 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562708 chr19:14562690 synonymous SNV . 0 3 hm5C_associated_SNPs_33738 0 0 1 0 1 PKN1 chr19:14562641 3'AG 14562641 Downstream 50bp
chr1 111991770 111991770 1 - G A SKCM 111991768 - 111991748 111991788 41 CGGAAGGAAACCCCACCCCCCCTAGTGCCCCCGGCGGCCCG CGGAAGGAAACCCCACCCTCCCTAGTGCCCCCGGCGGCCCG < 41bp 1 0.234222509100714 1 0.064373642206192 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR77 ENSG00000116455 CDS Human protein_coding chr1:111991768 chr1:111991770 nonsynonymous SNV 0.003 0 19 hm5C_associated_SNPs_33739 0 0 1 0 1 WDR77 chr1:111991677 5'GT 111991677 Upstream 94bp
chr9 127982863 127982863 1 + C T SKCM 127982849 + 127982829 127982869 41 TGGACCACGCCAGAAGTGACCAGCCCCCCACCATCCCCAAG TGGACCACGCCAGAAGTGACCAGCCCCCCACCATTCCCAAG < 41bp 1 0.630753347752966 1 0.674006879329681 experiment 0.738493304494069 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RABEPK ENSG00000136933 CDS Human protein_coding chr9:127982849 chr9:127982863 nonsynonymous SNV 0.950 3 35 hm5C_associated_SNPs_33742 0 0 0 3 1 RABEPK chr9:127982818 3'AG 127982818 Downstream 46bp
chr17 73727994 73727994 1 + C T SKCM 73727993 + 73727973 73728013 41 CAACATCCATCTGAAACCTTCCTTCTCCGACGGCCTCAAGA CAACATCCATCTGAAACCTTCTTTCTCCGACGGCCTCAAGA < 41bp 1 0.0175436053355521 1 0.0148124098777771 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73727993 chr17:73727994 synonymous SNV . 0 22 hm5C_associated_SNPs_33743 0 0 0 0 1 ITGB4 chr17:73728054 5'GT 73728054 Upstream 61bp
chr3 58112433 58112433 1 + C T SKCM 58112439 + 58112419 58112459 41 TGCTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTA TGCTGAGTACATTCTTTTCGCACCGGGGGATTACGATGTTA < 41bp 1 0.445428497543053 1 0.0721394419670105 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112439 chr3:58112433 nonsynonymous SNV 0.944 5 15 hm5C_associated_SNPs_33744 0 0 1 0 1 FLNB chr3:58112489 5'GT 58112489 Upstream 57bp
chr3 58112433 58112433 1 + C T SKCM 58112441 + 58112421 58112461 41 CTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAAT CTGAGTACATTCTTTTCGCACCGGGGGATTACGATGTTAAT < 41bp 1 0.189783728466613 1 0.248887538909912 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112441 chr3:58112433 nonsynonymous SNV 0.944 5 13 hm5C_associated_SNPs_33745 0 0 1 0 1 FLNB chr3:58112489 5'GT 58112489 Upstream 57bp
chr3 58112433 58112433 1 + C T SKCM 58112442 + 58112422 58112462 41 TGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAATA TGAGTACATTCTTTTCGCACCGGGGGATTACGATGTTAATA < 41bp 1 0.396393025983444 1 0.873940348625183 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112442 chr3:58112433 nonsynonymous SNV 0.944 5 12 hm5C_associated_SNPs_33746 0 0 1 0 1 FLNB chr3:58112489 5'GT 58112489 Upstream 57bp
chr8 145695010 145695010 1 + C T SKCM 145695008 + 145694988 145695028 41 CCGCCTAGACTGGGTCTTCCCTCCAGACGCCAGCCAGGAGG CCGCCTAGACTGGGTCTTCCCTTCAGACGCCAGCCAGGAGG < 41bp 1 0.623272660754115 1 0.810051321983337 experiment 0.75345467849177 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145695008 chr8:145695010 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_33749 0 0 1 0 1 KIFC2 chr8:145695030 5'GT 145695030 Upstream 21bp
chr7 142458518 142458518 1 + C T SKCM 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCTCT < 41bp 1 0.062819420589468 1 0.111455410718918 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458518 synonymous SNV . 0 39 hm5C_associated_SNPs_33750 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 39bp
chr7 142458518 142458518 1 + C T SKCM 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCTCT < 41bp 1 0.062819420589468 1 0.111455410718918 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458518 synonymous SNV . 0 39 hm5C_associated_SNPs_33750 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 48bp
chr7 142458518 142458518 1 + C T SKCM 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCTCTC < 41bp 1 0.176243336635327 1 0.181730538606644 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458518 synonymous SNV . 0 38 hm5C_associated_SNPs_33751 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 39bp
chr7 142458518 142458518 1 + C T SKCM 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCTCTC < 41bp 1 0.176243336635327 1 0.181730538606644 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458518 synonymous SNV . 0 38 hm5C_associated_SNPs_33751 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 48bp
chr7 142458518 142458518 1 + C T SKCM 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCTCTCAT < 41bp 1 0.27566449052503 1 0.379938155412674 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458518 synonymous SNV . 0 36 hm5C_associated_SNPs_33752 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 39bp
chr7 142458518 142458518 1 + C T SKCM 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCTCTCAT < 41bp 1 0.27566449052503 1 0.379938155412674 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458518 synonymous SNV . 0 36 hm5C_associated_SNPs_33752 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 48bp
chr7 142458518 142458518 1 + C T SKCM 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGGCTACCACTTCTGTGGTGGCTCTCTCATCAA < 41bp 1 0.627491312649812 1 0.170124173164368 experiment 0.745017374700377 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458518 synonymous SNV . 0 33 hm5C_associated_SNPs_33753 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 39bp
chr7 142458518 142458518 1 + C T SKCM 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGGCTACCACTTCTGTGGTGGCTCTCTCATCAA < 41bp 1 0.627491312649812 1 0.170124173164368 experiment 0.745017374700377 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458518 synonymous SNV . 0 33 hm5C_associated_SNPs_33753 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 48bp
chr7 142458518 142458518 1 + C T SKCM 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGTGGTGGCTCTCTCATCAACGAACAGTG < 41bp 1 0.12837769523524 1 0.0427707433700562 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458518 synonymous SNV . 0 24 hm5C_associated_SNPs_33754 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 39bp
chr7 142458518 142458518 1 + C T SKCM 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGTGGTGGCTCTCTCATCAACGAACAGTG < 41bp 1 0.12837769523524 1 0.0427707433700562 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458518 synonymous SNV . 0 24 hm5C_associated_SNPs_33754 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 48bp
chr7 142458518 142458518 1 + C T SKCM 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGGTGGCTCTCTCATCAACGAACAGTGGG < 41bp 1 0.214716098901415 1 0.0575221478939056 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458518 synonymous SNV . 0 22 hm5C_associated_SNPs_33755 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 39bp
chr7 142458518 142458518 1 + C T SKCM 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGGTGGCTCTCTCATCAACGAACAGTGGG < 41bp 1 0.214716098901415 1 0.0575221478939056 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458518 synonymous SNV . 0 22 hm5C_associated_SNPs_33755 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 48bp
chr7 142458518 142458518 1 + C T SKCM 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGGTGGCTCTCTCATCAACGAACAGTGGGTG < 41bp 1 0.443985582147775 1 0.280475437641144 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458518 synonymous SNV . 0 20 hm5C_associated_SNPs_33756 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 39bp
chr7 142458518 142458518 1 + C T SKCM 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGGTGGCTCTCTCATCAACGAACAGTGGGTG < 41bp 1 0.443985582147775 1 0.280475437641144 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458518 synonymous SNV . 0 20 hm5C_associated_SNPs_33756 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 48bp
chr7 142458518 142458518 1 + C T SKCM 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGGTGGCTCTCTCATCAACGAACAGTGGGTGGT < 41bp 1 0.574818004290354 1 0.782146334648132 experiment 0.850363991419291 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458518 synonymous SNV . 0 18 hm5C_associated_SNPs_33757 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 39bp
chr7 142458518 142458518 1 + C T SKCM 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGGTGGCTCTCTCATCAACGAACAGTGGGTGGT < 41bp 1 0.574818004290354 1 0.782146334648132 experiment 0.850363991419291 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458518 synonymous SNV . 0 18 hm5C_associated_SNPs_33757 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 48bp
chr7 142458518 142458518 1 + C T SKCM 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGGTGGCTCTCTCATCAACGAACAGTGGGTGGTATC < 41bp 1 0.690391347768946 1 0.561062276363373 experiment 0.619217304462108 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458518 synonymous SNV . 0 15 hm5C_associated_SNPs_33758 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 39bp
chr7 142458518 142458518 1 + C T SKCM 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGGTGGCTCTCTCATCAACGAACAGTGGGTGGTATC < 41bp 1 0.690391347768946 1 0.561062276363373 experiment 0.619217304462108 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458518 synonymous SNV . 0 15 hm5C_associated_SNPs_33758 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 48bp
chr7 142458518 142458518 1 + C T SKCM 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGCTCTCTCATCAACGAACAGTGGGTGGTATCAGC < 41bp 1 0.373817240482886 1 0.451323598623276 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458518 synonymous SNV . 0 12 hm5C_associated_SNPs_33759 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 39bp
chr7 142458518 142458518 1 + C T SKCM 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGCTCTCTCATCAACGAACAGTGGGTGGTATCAGC < 41bp 1 0.373817240482886 1 0.451323598623276 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458518 synonymous SNV . 0 12 hm5C_associated_SNPs_33759 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 48bp
chr7 142458518 142458518 1 + C T SKCM 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGCTCTCTCATCAACGAACAGTGGGTGGTATCAGCAGGC < 41bp 1 0.516533502965836 1 0.444592416286469 experiment 0.966932994068328 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458518 synonymous SNV . 0 8 hm5C_associated_SNPs_33760 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 39bp
chr7 142458518 142458518 1 + C T SKCM 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGCTCTCTCATCAACGAACAGTGGGTGGTATCAGCAGGC < 41bp 1 0.516533502965836 1 0.444592416286469 experiment 0.966932994068328 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458518 synonymous SNV . 0 8 hm5C_associated_SNPs_33760 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 48bp
chr15 91448685 91448685 1 + C T SKCM 91448697 + 91448677 91448717 41 CCATCTCCCCGCAGGACTGCCAGTTTGCTTTGGGGGGCCGG CCATCTCCTCGCAGGACTGCCAGTTTGCTTTGGGGGGCCGG < 41bp 1 0.252839112979404 1 0.247318655252457 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91448697 chr15:91448685 nonsynonymous SNV 0.943 1 9 hm5C_associated_SNPs_33761 0 0 1 0 1 MAN2A2 chr15:91448738 5'GT 91448738 Upstream 54bp
chr3 50614589 50614589 1 + C T SKCM 50614569 + 50614549 50614589 41 CCCCTCATTCTGGAGGTGGGCTGCGGATCAGGAGCCATCTC CCCCTCATTCTGGAGGTGGGCTGCGGATCAGGAGCCATCTT < 41bp 1 0.686135383879501 1 0.0964393615722656 experiment 0.627729232240997 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614569 chr3:50614589 nonsynonymous SNV 0.467 3 41 hm5C_associated_SNPs_33763 0 0 0 0 1 HEMK1 chr3:50614617 5'GT 50614617 Upstream 29bp
chr3 50614589 50614589 1 + C T SKCM 50614597 + 50614577 50614617 41 CAGGAGCCATCTCCCTCAGCCTGCTGAGCCAGCTCCCCCAG CAGGAGCCATCTTCCTCAGCCTGCTGAGCCAGCTCCCCCAG < 41bp 1 0.634377718558936 1 0.356360197067261 experiment 0.731244562882128 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614597 chr3:50614589 nonsynonymous SNV 0.467 3 13 hm5C_associated_SNPs_33764 0 0 0 0 1 HEMK1 chr3:50614617 5'GT 50614617 Upstream 29bp
chr16 56501903 56501903 1 + T C SKCM 56501910 + 56501890 56501930 41 TTGAAGAAAGTTCTGAAATTCTCCTGAAGGAGTTTCTTAAG TTGAAGAAAGTTCCGAAATTCTCCTGAAGGAGTTTCTTAAG < 41bp 1 0.596746736433992 1 0.872891187667847 experiment 0.806506527132015 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGFOD1 ENSG00000087263 CDS Human protein_coding chr16:56501910 chr16:56501903 synonymous SNV . 0 14 hm5C_associated_SNPs_33765 0 0 1 0 2 OGFOD1 chr16:56501817 3'AG 56501817 Downstream 87bp
chr16 56501903 56501903 1 + T C SKCM 56501910 + 56501890 56501930 41 TTGAAGAAAGTTCTGAAATTCTCCTGAAGGAGTTTCTTAAG TTGAAGAAAGTTCCGAAATTCTCCTGAAGGAGTTTCTTAAG < 41bp 1 0.596746736433992 1 0.872891187667847 experiment 0.806506527132015 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGFOD1 ENSG00000087263 CDS Human protein_coding chr16:56501910 chr16:56501903 synonymous SNV . 0 14 hm5C_associated_SNPs_33765 0 0 1 0 2 OGFOD1 chr16:56501930 5'GT 56501930 Upstream 28bp
chr11 118516529 118516529 1 + C A SKCM 118516515 + 118516495 118516535 41 GATGCTGAAAGAGGCTCATGCAGAGAAGAACCGGCTCATGG GATGCTGAAAGAGGCTCATGCAGAGAAGAACCGGATCATGG < 41bp 1 0.578252068874506 1 0.680178642272949 experiment 0.843495862250987 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118516515 chr11:118516529 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_33766 0 0 1 0 1 PHLDB1 chr11:118516453 3'AG 118516453 Downstream 77bp
chr8 11679263 11679263 1 + C T SKCM 11679261 + 11679241 11679281 41 TTACGGTTTCCATTTCAGATCTCCCTTGAGTTTAGAAATCT TTACGGTTTCCATTTCAGATCTTCCTTGAGTTTAGAAATCT < 41bp 1 0.0814802616841832 1 0.0208845734596252 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FDFT1 ENSG00000079459 CDS Human protein_coding chr8:11679261 chr8:11679263 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_33768 0 0 1 0 1 FDFT1 chr8:11679259 3'AG 11679259 Downstream 5bp
chr22 23656241 23656241 1 + C T SKCM 23656252 + 23656232 23656272 41 TTCCTTTTCCTTCTGGACCACCTGAAAAGGTAGCCCAGCTC TTCCTTTTCTTTCTGGACCACCTGAAAAGGTAGCCCAGCTC < 41bp 1 0.132740993888617 1 0.486305147409439 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23656252 chr22:23656241 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_33769 0 0 1 0 2 BCR chr22:23656155 3'AG 23656155 Downstream 87bp
chr22 23656241 23656241 1 + C T SKCM 23656252 + 23656232 23656272 41 TTCCTTTTCCTTCTGGACCACCTGAAAAGGTAGCCCAGCTC TTCCTTTTCTTTCTGGACCACCTGAAAAGGTAGCCCAGCTC < 41bp 1 0.132740993888617 1 0.486305147409439 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23656252 chr22:23656241 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_33769 0 0 1 0 2 BCR chr22:23656260 5'GT 23656260 Upstream 20bp
chr22 23656241 23656241 1 + C T SKCM 23656253 + 23656233 23656273 41 TCCTTTTCCTTCTGGACCACCTGAAAAGGTAGCCCAGCTCT TCCTTTTCTTTCTGGACCACCTGAAAAGGTAGCCCAGCTCT < 41bp 1 0.398625079209723 1 0.379164129495621 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23656253 chr22:23656241 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_33770 0 0 1 0 2 BCR chr22:23656155 3'AG 23656155 Downstream 87bp
chr22 23656241 23656241 1 + C T SKCM 23656253 + 23656233 23656273 41 TCCTTTTCCTTCTGGACCACCTGAAAAGGTAGCCCAGCTCT TCCTTTTCTTTCTGGACCACCTGAAAAGGTAGCCCAGCTCT < 41bp 1 0.398625079209723 1 0.379164129495621 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23656253 chr22:23656241 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_33770 0 0 1 0 2 BCR chr22:23656260 5'GT 23656260 Upstream 20bp
chr22 47290702 47290702 1 + T C SKCM 47290696 + 47290676 47290716 41 CCAGATCCACATAGACATCCCTCGCATGAGCCCTGAAGCGT CCAGATCCACATAGACATCCCTCGCACGAGCCCTGAAGCGT < 41bp 1 0.238728090692023 1 0.0867392122745514 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBC1D22A ENSG00000054611 CDS Human protein_coding chr22:47290696 chr22:47290702 nonsynonymous SNV 0.989 1 27 hm5C_associated_SNPs_33771 0 0 1 0 2 TBC1D22A chr22:47290680 3'AG 47290680 Downstream 23bp
chr22 47290702 47290702 1 + T C SKCM 47290696 + 47290676 47290716 41 CCAGATCCACATAGACATCCCTCGCATGAGCCCTGAAGCGT CCAGATCCACATAGACATCCCTCGCACGAGCCCTGAAGCGT < 41bp 1 0.238728090692023 1 0.0867392122745514 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBC1D22A ENSG00000054611 CDS Human protein_coding chr22:47290696 chr22:47290702 nonsynonymous SNV 0.989 1 27 hm5C_associated_SNPs_33771 0 0 1 0 2 TBC1D22A chr22:47290742 5'GT 47290742 Upstream 41bp
chr2 169551543 169551543 1 + C T SKCM 169551536 + 169551516 169551556 41 TTATTGGTCTTTGATGTTTTCTCAGTTCACTGATATCAAAA TTATTGGTCTTTGATGTTTTCTCAGTTTACTGATATCAAAA < 41bp 1 0.470327650408362 1 0.4825758934021 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169551536 chr2:169551543 synonymous SNV . 0 28 hm5C_associated_SNPs_33776 0 0 1 0 2 CERS6 chr2:169551469 3'AG 169551469 Downstream 75bp
chr2 169551543 169551543 1 + C T SKCM 169551536 + 169551516 169551556 41 TTATTGGTCTTTGATGTTTTCTCAGTTCACTGATATCAAAA TTATTGGTCTTTGATGTTTTCTCAGTTTACTGATATCAAAA < 41bp 1 0.470327650408362 1 0.4825758934021 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169551536 chr2:169551543 synonymous SNV . 0 28 hm5C_associated_SNPs_33776 0 0 1 0 2 CERS6 chr2:169551561 5'GT 169551561 Upstream 19bp
chr1 156761560 156761560 1 + T G SKCM 156761563 + 156761543 156761583 41 CAGGAAATTGCCCCAGATGCCTCCTTCATCGATGACGAAGC CAGGAAATTGCCCCAGAGGCCTCCTTCATCGATGACGAAGC < 41bp 1 0.39103269550027 1 0.415153950452805 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156761563 chr1:156761560 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_33777 0 0 1 0 2 PRCC chr1:156761489 3'AG 156761489 Downstream 72bp
chr1 156761560 156761560 1 + T G SKCM 156761563 + 156761543 156761583 41 CAGGAAATTGCCCCAGATGCCTCCTTCATCGATGACGAAGC CAGGAAATTGCCCCAGAGGCCTCCTTCATCGATGACGAAGC < 41bp 1 0.39103269550027 1 0.415153950452805 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156761563 chr1:156761560 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_33777 0 0 1 0 2 PRCC chr1:156761584 5'GT 156761584 Upstream 25bp
chr5 912018 912018 1 + C T SKCM 912029 + 912009 912049 41 CGTGGCCTTCGTGGACAGGGCTGACATCAAGCAGTACATTG CGTGGCCTTTGTGGACAGGGCTGACATCAAGCAGTACATTG < 41bp 1 0.362170076091564 1 0.0247178375720978 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:912029 chr5:912018 synonymous SNV . 0 10 hm5C_associated_SNPs_33778 0 0 1 0 2 TRIP13 chr5:911958 3'AG 911958 Downstream 61bp
chr5 912018 912018 1 + C T SKCM 912029 + 912009 912049 41 CGTGGCCTTCGTGGACAGGGCTGACATCAAGCAGTACATTG CGTGGCCTTTGTGGACAGGGCTGACATCAAGCAGTACATTG < 41bp 1 0.362170076091564 1 0.0247178375720978 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:912029 chr5:912018 synonymous SNV . 0 10 hm5C_associated_SNPs_33778 0 0 1 0 2 TRIP13 chr5:912111 5'GT 912111 Upstream 94bp
chr7 142460296 142460296 1 + G A SKCM 142460282 + 142460262 142460302 41 TCTCTTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGC TCTCTTCCTGATCCTCACAGCCGACTACCCAGACAAGCTGC < 41bp 1 0.102197042271351 1 0.249716013669968 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460282 chr7:142460296 nonsynonymous SNV 0.003 1 35 hm5C_associated_SNPs_33780 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 15bp
chr7 142460296 142460296 1 + G A SKCM 142460283 + 142460263 142460303 41 CTCTTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGCA CTCTTCCTGATCCTCACAGCCGACTACCCAGACAAGCTGCA < 41bp 1 0.163464629276944 1 0.485132992267609 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460283 chr7:142460296 nonsynonymous SNV 0.003 1 34 hm5C_associated_SNPs_33781 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 15bp
chr7 142460296 142460296 1 + G A SKCM 142460286 + 142460266 142460306 41 TTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTG TTCCTGATCCTCACAGCCGACTACCCAGACAAGCTGCAGTG < 41bp 1 0.136182650215182 1 0.316208958625793 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460286 chr7:142460296 nonsynonymous SNV 0.003 1 31 hm5C_associated_SNPs_33782 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 15bp
chr7 142460296 142460296 1 + G A SKCM 142460289 + 142460269 142460309 41 CTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCT CTGATCCTCACAGCCGACTACCCAGACAAGCTGCAGTGCCT < 41bp 1 0.121874895531589 1 0.334520399570465 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460289 chr7:142460296 nonsynonymous SNV 0.003 1 28 hm5C_associated_SNPs_33783 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 15bp
chr7 142460296 142460296 1 + G A SKCM 142460290 + 142460270 142460310 41 TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTG TGATCCTCACAGCCGACTACCCAGACAAGCTGCAGTGCCTG < 41bp 1 0.428181020140864 1 0.302489429712296 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460290 chr7:142460296 nonsynonymous SNV 0.003 1 27 hm5C_associated_SNPs_33784 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 15bp
chr7 142460296 142460296 1 + G A SKCM 142460291 + 142460271 142460311 41 GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGG GATCCTCACAGCCGACTACCCAGACAAGCTGCAGTGCCTGG < 41bp 1 0.354926623547272 1 0.45653709769249 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460291 chr7:142460296 nonsynonymous SNV 0.003 1 26 hm5C_associated_SNPs_33785 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 15bp
chr7 142460296 142460296 1 + G A SKCM 142460295 + 142460275 142460315 41 CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGC CTCACAGCCGACTACCCAGACAAGCTGCAGTGCCTGGATGC < 41bp 1 0.330566383600439 1 0.205643832683563 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460295 chr7:142460296 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_33786 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 15bp
chr7 142460296 142460296 1 + G A SKCM 142460299 + 142460279 142460319 41 CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT CAGCCGACTACCCAGACAAGCTGCAGTGCCTGGATGCTCCT < 41bp 1 0.752251894519977 1 0.339968740940094 experiment 0.495496210960046 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460299 chr7:142460296 nonsynonymous SNV 0.003 1 18 hm5C_associated_SNPs_33787 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 15bp
chr7 142460296 142460296 1 + G A SKCM 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGACAAGCTGCAGTGCCTGGATGCTCCTGTG < 41bp 1 0.287866116076759 1 0.197180032730103 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460296 nonsynonymous SNV 0.003 1 15 hm5C_associated_SNPs_33788 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 15bp
chr7 142460296 142460296 1 + G A SKCM 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACAAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG < 41bp 1 0.182246990076213 1 0.0649911761283875 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460296 nonsynonymous SNV 0.003 1 10 hm5C_associated_SNPs_33789 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 15bp
chr7 142460296 142460296 1 + G A SKCM 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CAAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA < 41bp 1 0.417418620821104 1 0.284577757120132 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460296 nonsynonymous SNV 0.003 1 2 hm5C_associated_SNPs_33790 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 15bp
chr16 67671679 67671679 1 + C T SKCM 67671677 + 67671657 67671697 41 AAAAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAG AAAAAGAGCCAGATGCTGAGCCTGCAGAGGGAGAGGAAGAG < 41bp 1 0.0874774426049097 1 0.149682521820068 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671677 chr16:67671679 synonymous SNV . 0 23 hm5C_associated_SNPs_33791 0 0 1 0 2 CTCF chr16:67671591 3'AG 67671591 Downstream 89bp
chr16 67671679 67671679 1 + C T SKCM 67671677 + 67671657 67671697 41 AAAAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAG AAAAAGAGCCAGATGCTGAGCCTGCAGAGGGAGAGGAAGAG < 41bp 1 0.0874774426049097 1 0.149682521820068 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671677 chr16:67671679 synonymous SNV . 0 23 hm5C_associated_SNPs_33791 0 0 1 0 2 CTCF chr16:67671597 3'AG 67671597 Downstream 83bp
chr16 67671679 67671679 1 + C T SKCM 67671681 + 67671661 67671701 41 AGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGGAGG AGAGCCAGATGCTGAGCCTGCAGAGGGAGAGGAAGAGGAGG < 41bp 1 0.663482466574785 1 0.547104477882385 experiment 0.67303506685043 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671681 chr16:67671679 synonymous SNV . 0 19 hm5C_associated_SNPs_33792 0 0 1 0 2 CTCF chr16:67671591 3'AG 67671591 Downstream 89bp
chr16 67671679 67671679 1 + C T SKCM 67671681 + 67671661 67671701 41 AGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGGAGG AGAGCCAGATGCTGAGCCTGCAGAGGGAGAGGAAGAGGAGG < 41bp 1 0.663482466574785 1 0.547104477882385 experiment 0.67303506685043 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671681 chr16:67671679 synonymous SNV . 0 19 hm5C_associated_SNPs_33792 0 0 1 0 2 CTCF chr16:67671597 3'AG 67671597 Downstream 83bp
chr2 232576099 232576099 1 + T C SKCM 232576110 + 232576090 232576130 41 GGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCTG GGCAGAAAACGGAAGAGACGCCCCTGCTAACGGGAATGCTG < 41bp 1 0.230288595781899 1 0.0708431899547577 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576110 chr2:232576099 nonsynonymous SNV . 0 10 hm5C_associated_SNPs_33795 0 0 1 0 2 PTMA chr2:232576058 3'AG 232576058 Downstream 42bp
chr2 232576099 232576099 1 + T C SKCM 232576110 + 232576090 232576130 41 GGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCTG GGCAGAAAACGGAAGAGACGCCCCTGCTAACGGGAATGCTG < 41bp 1 0.230288595781899 1 0.0708431899547577 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576110 chr2:232576099 nonsynonymous SNV . 0 10 hm5C_associated_SNPs_33795 0 0 1 0 2 PTMA chr2:232576129 5'GT 232576129 Upstream 31bp
chr19 41811648 41811648 1 + C T SKCM 41811651 + 41811631 41811671 41 CACAGCCCCACCGCCTCCACCTCCACCACCACCTGCCTACA CACAGCCCCACCGCCTCTACCTCCACCACCACCTGCCTACA < 41bp 1 0.709629528582581 1 0.909589231014252 experiment 0.580740942834838 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41811651 chr19:41811648 nonsynonymous SNV 0.999 2 18 hm5C_associated_SNPs_33797 0 0 1 0 2 HNRNPUL1 chr19:41811551 3'AG 41811551 Downstream 98bp
chr19 41811648 41811648 1 + C T SKCM 41811651 + 41811631 41811671 41 CACAGCCCCACCGCCTCCACCTCCACCACCACCTGCCTACA CACAGCCCCACCGCCTCTACCTCCACCACCACCTGCCTACA < 41bp 1 0.709629528582581 1 0.909589231014252 experiment 0.580740942834838 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41811651 chr19:41811648 nonsynonymous SNV 0.999 2 18 hm5C_associated_SNPs_33797 0 0 1 0 2 HNRNPUL1 chr19:41811581 3'AG 41811581 Downstream 68bp
chr8 107752590 107752590 1 + C T SKCM 107752575 + 107752555 107752595 41 ACTTTGTTTTCTAAAGCTTACCAAGCATCTTCCACCAAGAA ACTTTGTTTTCTAAAGCTTACCAAGCATCTTCCACTAAGAA < 41bp 1 0.0543972317381117 1 0.0817886590957642 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OXR1 ENSG00000164830 CDS Human protein_coding chr8:107752575 chr8:107752590 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_33798 0 0 1 0 1 OXR1 chr8:107752571 3'AG 107752571 Downstream 20bp
chr15 72057461 72057461 1 + C T SKCM 72057443 + 72057423 72057463 41 ACACCTTTGAAGTGTTGGACCCCTCTGAATGTTCTTTCCTG ACACCTTTGAAGTGTTGGACCCCTCTGAATGTTCTTTCTTG < 41bp 1 0.0235508074955906 1 0.0121984481811523 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control THSD4 ENSG00000187720 CDS Human protein_coding chr15:72057443 chr15:72057461 synonymous SNV . 0 39 hm5C_associated_SNPs_33799 0 0 0 0 1 THSD4 chr15:72057538 5'GT 72057538 Upstream 78bp
chr17 79408931 79408931 1 + C T SKCM 79408935 + 79408915 79408955 41 CTTCCCCAGCGTGGCCCGGGCCGCCCCTGCCCACCCCATGG CTTCCCCAGCGTGGCCTGGGCCGCCCCTGCCCACCCCATGG < 41bp 1 0.131380620158021 1 0.171023607254028 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79408935 chr17:79408931 nonsynonymous SNV 0.430 3 17 hm5C_associated_SNPs_33800 0 0 1 0 1 BAHCC1 chr17:79408857 3'AG 79408857 Downstream 75bp
chr3 127398860 127398860 1 + C T SKCM 127398863 + 127398843 127398883 41 GCCTATGATGTGCTGAGCGTCGCCGACATGTACCTGCTGCC GCCTATGATGTGCTGAGTGTCGCCGACATGTACCTGCTGCC < 41bp 1 0.731560907936523 1 0.850521981716156 experiment 0.536878184126953 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127398863 chr3:127398860 synonymous SNV . 0 18 hm5C_associated_SNPs_33801 0 0 0 0 1 ABTB1 chr3:127398828 3'AG 127398828 Downstream 33bp
chr7 44741180 44741180 1 + C T SKCM 44741191 + 44741171 44741211 41 GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC GCGCCACCCTGAGGCCAGATCCAGCTTTGATGAGATGCTTC < 41bp 1 0.20203740148543 1 0.573384523391724 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44741191 chr7:44741180 synonymous SNV . 0 10 hm5C_associated_SNPs_33802 0 0 1 0 2 OGDH chr7:44741142 3'AG 44741142 Downstream 39bp
chr7 44741180 44741180 1 + C T SKCM 44741191 + 44741171 44741211 41 GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC GCGCCACCCTGAGGCCAGATCCAGCTTTGATGAGATGCTTC < 41bp 1 0.20203740148543 1 0.573384523391724 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44741191 chr7:44741180 synonymous SNV . 0 10 hm5C_associated_SNPs_33802 0 0 1 0 2 OGDH chr7:44741214 5'GT 44741214 Upstream 35bp
chr12 57597268 57597268 1 + A G SKCM 57597276 + 57597256 57597296 41 GACGCCGACTGCATGGACGGCAGCGACGAGGAGGCCTGCGG GACGCCGACTGCGTGGACGGCAGCGACGAGGAGGCCTGCGG < 41bp 1 0.277490355243482 1 0.331799685955048 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57597276 chr12:57597268 nonsynonymous SNV 0.990 1 13 hm5C_associated_SNPs_33803 0 0 1 0 2 LRP1 chr12:57597172 3'AG 57597172 Downstream 97bp
chr12 57597268 57597268 1 + A G SKCM 57597276 + 57597256 57597296 41 GACGCCGACTGCATGGACGGCAGCGACGAGGAGGCCTGCGG GACGCCGACTGCGTGGACGGCAGCGACGAGGAGGCCTGCGG < 41bp 1 0.277490355243482 1 0.331799685955048 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57597276 chr12:57597268 nonsynonymous SNV 0.990 1 13 hm5C_associated_SNPs_33803 0 0 1 0 2 LRP1 chr12:57597304 5'GT 57597304 Upstream 37bp
chr1 206653239 206653239 1 + C T SKCM 206653240 + 206653220 206653260 41 GGACGTCCCCAAGTTCGTCCCCAAAGTGGACCTGCAGGCGG GGACGTCCCCAAGTTCGTCTCCAAAGTGGACCTGCAGGCGG < 41bp 1 0.513756386424229 1 0.352956026792526 experiment 0.972487227151543 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IKBKE ENSG00000143466 CDS Human other chr1:206653240 chr1:206653239 nonsynonymous SNV 0.970 2 20 hm5C_associated_SNPs_33804 0 0 1 0 2 IKBKE chr1:206653213 3'AG 206653213 Downstream 27bp
chr1 206653239 206653239 1 + C T SKCM 206653240 + 206653220 206653260 41 GGACGTCCCCAAGTTCGTCCCCAAAGTGGACCTGCAGGCGG GGACGTCCCCAAGTTCGTCTCCAAAGTGGACCTGCAGGCGG < 41bp 1 0.513756386424229 1 0.352956026792526 experiment 0.972487227151543 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IKBKE ENSG00000143466 CDS Human other chr1:206653240 chr1:206653239 nonsynonymous SNV 0.970 2 20 hm5C_associated_SNPs_33804 0 0 1 0 2 IKBKE chr1:206653277 5'GT 206653277 Upstream 39bp
chr17 47004384 47004384 1 + G T SKCM 47004386 + 47004366 47004406 41 CCCTCTTGATGCGCCTGGGACTGATACGTCAGAAAGTGCTG CCCTCTTGATGCGCCTGGTACTGATACGTCAGAAAGTGCTG < 41bp 1 0.308709951675248 1 0.0837374925613403 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE2Z ENSG00000159202 CDS Human protein_coding chr17:47004386 chr17:47004384 nonsynonymous SNV 0.999 0 19 hm5C_associated_SNPs_33805 0 0 1 0 1 UBE2Z chr17:47004326 3'AG 47004326 Downstream 59bp
chr11 61630777 61630777 1 + T C SKCM 61630766 + 61630746 61630786 41 TCTTGCAGGTTCCTGGAGAGCCACTGGTTTGTGTGGGTCAC TCTTGCAGGTTCCTGGAGAGCCACTGGTTTGCGTGGGTCAC < 41bp 1 0.19355004876393 1 0.0792540013790131 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61630766 chr11:61630777 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_33806 0 0 1 0 2 FADS2 chr11:61630754 3'AG 61630754 Downstream 24bp
chr11 61630777 61630777 1 + T C SKCM 61630766 + 61630746 61630786 41 TCTTGCAGGTTCCTGGAGAGCCACTGGTTTGTGTGGGTCAC TCTTGCAGGTTCCTGGAGAGCCACTGGTTTGCGTGGGTCAC < 41bp 1 0.19355004876393 1 0.0792540013790131 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61630766 chr11:61630777 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_33806 0 0 1 0 2 FADS2 chr11:61630850 5'GT 61630850 Upstream 74bp
chr19 14024303 14024303 1 + C T SKCM 14024290 + 14024270 14024310 41 GGACATCCCGCCGCCAGTGGCCATAGGAAAAGGCCCGGCGT GGACATCCCGCCGCCAGTGGCCATAGGAAAAGGTCCGGCGT < 41bp 1 0.255359013860117 1 0.137105971574783 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14024290 chr19:14024303 synonymous SNV . 0 34 hm5C_associated_SNPs_33808 0 0 0 0 1 CC2D1A chr19:14024217 3'AG 14024217 Downstream 87bp
chr1 183891388 183891388 1 + C T SKCM 183891401 + 183891381 183891421 41 CTGTGATCCAGAGAGCCATGCTGAAGCACAATCTGGACTCA CTGTGATTCAGAGAGCCATGCTGAAGCACAATCTGGACTCA < 41bp 1 0.722814794398918 1 0.65168559551239 experiment 0.554370411202164 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RGL1 ENSG00000143344 CDS Human protein_coding chr1:183891401 chr1:183891388 synonymous SNV . 0 8 hm5C_associated_SNPs_33811 0 0 0 0 2 RGL1 chr1:183891356 3'AG 183891356 Downstream 33bp
chr1 183891388 183891388 1 + C T SKCM 183891401 + 183891381 183891421 41 CTGTGATCCAGAGAGCCATGCTGAAGCACAATCTGGACTCA CTGTGATTCAGAGAGCCATGCTGAAGCACAATCTGGACTCA < 41bp 1 0.722814794398918 1 0.65168559551239 experiment 0.554370411202164 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RGL1 ENSG00000143344 CDS Human protein_coding chr1:183891401 chr1:183891388 synonymous SNV . 0 8 hm5C_associated_SNPs_33811 0 0 0 0 2 RGL1 chr1:183891470 5'GT 183891470 Upstream 83bp
chr22 23656240 23656240 1 + C T SKCM 23656252 + 23656232 23656272 41 TTCCTTTTCCTTCTGGACCACCTGAAAAGGTAGCCCAGCTC TTCCTTTTTCTTCTGGACCACCTGAAAAGGTAGCCCAGCTC < 41bp 1 0.136992023436007 1 0.419651985168457 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23656252 chr22:23656240 synonymous SNV . 0 9 hm5C_associated_SNPs_33812 0 0 1 0 2 BCR chr22:23656155 3'AG 23656155 Downstream 86bp
chr22 23656240 23656240 1 + C T SKCM 23656252 + 23656232 23656272 41 TTCCTTTTCCTTCTGGACCACCTGAAAAGGTAGCCCAGCTC TTCCTTTTTCTTCTGGACCACCTGAAAAGGTAGCCCAGCTC < 41bp 1 0.136992023436007 1 0.419651985168457 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23656252 chr22:23656240 synonymous SNV . 0 9 hm5C_associated_SNPs_33812 0 0 1 0 2 BCR chr22:23656260 5'GT 23656260 Upstream 21bp
chr22 23656240 23656240 1 + C T SKCM 23656253 + 23656233 23656273 41 TCCTTTTCCTTCTGGACCACCTGAAAAGGTAGCCCAGCTCT TCCTTTTTCTTCTGGACCACCTGAAAAGGTAGCCCAGCTCT < 41bp 1 0.426047294239468 1 0.41056877374649 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23656253 chr22:23656240 synonymous SNV . 0 8 hm5C_associated_SNPs_33813 0 0 1 0 2 BCR chr22:23656155 3'AG 23656155 Downstream 86bp
chr22 23656240 23656240 1 + C T SKCM 23656253 + 23656233 23656273 41 TCCTTTTCCTTCTGGACCACCTGAAAAGGTAGCCCAGCTCT TCCTTTTTCTTCTGGACCACCTGAAAAGGTAGCCCAGCTCT < 41bp 1 0.426047294239468 1 0.41056877374649 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23656253 chr22:23656240 synonymous SNV . 0 8 hm5C_associated_SNPs_33813 0 0 1 0 2 BCR chr22:23656260 5'GT 23656260 Upstream 21bp
chr22 22040809 22040809 1 + C T SKCM 22040825 + 22040805 22040845 41 TTCACCTCCACCGCGATGGTCCCGGAGACCACACATGAAGC TTCATCTCCACCGCGATGGTCCCGGAGACCACACATGAAGC < 41bp 1 0.295688277457143 1 0.362764030694962 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040825 chr22:22040809 nonsynonymous SNV 0.890 4 5 hm5C_associated_SNPs_33814 0 0 1 0 2 PPIL2 chr22:22040772 3'AG 22040772 Downstream 38bp
chr22 22040809 22040809 1 + C T SKCM 22040825 + 22040805 22040845 41 TTCACCTCCACCGCGATGGTCCCGGAGACCACACATGAAGC TTCATCTCCACCGCGATGGTCCCGGAGACCACACATGAAGC < 41bp 1 0.295688277457143 1 0.362764030694962 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040825 chr22:22040809 nonsynonymous SNV 0.890 4 5 hm5C_associated_SNPs_33814 0 0 1 0 2 PPIL2 chr22:22040847 5'GT 22040847 Upstream 39bp
chr11 65978657 65978657 1 + G A SKCM 65978638 + 65978618 65978658 41 TTAAGCGAGATGCCAACAAGCTGCAGATCATGCTGCAAAGG TTAAGCGAGATGCCAACAAGCTGCAGATCATGCTGCAAAAG < 41bp 1 0.628145041432555 1 0.372699856758118 experiment 0.743709917134889 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978638 chr11:65978657 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_33815 0 0 1 0 2 PACS1 chr11:65978605 3'AG 65978605 Downstream 53bp
chr11 65978657 65978657 1 + G A SKCM 65978638 + 65978618 65978658 41 TTAAGCGAGATGCCAACAAGCTGCAGATCATGCTGCAAAGG TTAAGCGAGATGCCAACAAGCTGCAGATCATGCTGCAAAAG < 41bp 1 0.628145041432555 1 0.372699856758118 experiment 0.743709917134889 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978638 chr11:65978657 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_33815 0 0 1 0 2 PACS1 chr11:65978730 5'GT 65978730 Upstream 74bp
chr19 41078007 41078007 1 + A C SKCM 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GGACTCCAAGGGCCCGGCATCCGGGAGCCCACACGGTGGGG < 41bp 1 0.39256096769184 1 0.904862284660339 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41078007 nonsynonymous SNV 0.950 0 29 hm5C_associated_SNPs_33817 0 0 0 0 2 SPTBN4 chr19:41077925 3'AG 41077925 Downstream 83bp
chr19 41078007 41078007 1 + A C SKCM 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GGACTCCAAGGGCCCGGCATCCGGGAGCCCACACGGTGGGG < 41bp 1 0.39256096769184 1 0.904862284660339 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41078007 nonsynonymous SNV 0.950 0 29 hm5C_associated_SNPs_33817 0 0 0 0 2 SPTBN4 chr19:41078098 5'GT 41078098 Upstream 92bp
chr13 77570096 77570096 1 + G A SKCM 77570092 + 77570072 77570112 41 ATTAACTGGCAAGAACTACACAATGGAATGGTATGAACTTT ATTAACTGGCAAGAACTACACAATAGAATGGTATGAACTTT < 41bp 1 0.642735245020702 1 0.269793629646301 experiment 0.714529509958596 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CLN5 ENSG00000102805 CDS Human protein_coding chr13:77570092 chr13:77570096 nonsynonymous SNV 0.962 1 25 hm5C_associated_SNPs_33818 0 0 1 0 1 CLN5 chr13:77570037 3'AG 77570037 Downstream 60bp
chr22 22040810 22040810 1 + C T SKCM 22040825 + 22040805 22040845 41 TTCACCTCCACCGCGATGGTCCCGGAGACCACACATGAAGC TTCACTTCCACCGCGATGGTCCCGGAGACCACACATGAAGC < 41bp 1 0.317697183715534 1 0.324733138084412 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040825 chr22:22040810 synonymous SNV . 0 6 hm5C_associated_SNPs_33819 0 0 1 0 2 PPIL2 chr22:22040772 3'AG 22040772 Downstream 39bp
chr22 22040810 22040810 1 + C T SKCM 22040825 + 22040805 22040845 41 TTCACCTCCACCGCGATGGTCCCGGAGACCACACATGAAGC TTCACTTCCACCGCGATGGTCCCGGAGACCACACATGAAGC < 41bp 1 0.317697183715534 1 0.324733138084412 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040825 chr22:22040810 synonymous SNV . 0 6 hm5C_associated_SNPs_33819 0 0 1 0 2 PPIL2 chr22:22040847 5'GT 22040847 Upstream 38bp
chr12 107237704 107237704 1 + C T SKCM 107237701 + 107237681 107237721 41 TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTCAAAGA TGTTCCCGAGCCCATCGAAACATTCGAAAATTTCTCAAAGA < 41bp 1 0.072561605488153 1 0.274057894945145 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107237701 chr12:107237704 synonymous SNV . 0 24 hm5C_associated_SNPs_33820 0 0 0 1 2 RIC8B chr12:107237630 3'AG 107237630 Downstream 75bp
chr12 107237704 107237704 1 + C T SKCM 107237701 + 107237681 107237721 41 TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTCAAAGA TGTTCCCGAGCCCATCGAAACATTCGAAAATTTCTCAAAGA < 41bp 1 0.072561605488153 1 0.274057894945145 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107237701 chr12:107237704 synonymous SNV . 0 24 hm5C_associated_SNPs_33820 0 0 0 1 2 RIC8B chr12:107237725 5'GT 107237725 Upstream 22bp
chr3 58118608 58118608 1 + G A SKCM 58118613 + 58118593 58118633 41 CACCCCATCTCAGGAGGGACCTTACATGGTCTCAGTTAAAT CACCCCATCTCAGGAAGGACCTTACATGGTCTCAGTTAAAT < 41bp 1 0.0161153939021759 1 0.20160374045372 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58118613 chr3:58118608 synonymous SNV . 0 16 hm5C_associated_SNPs_33821 0 0 1 0 2 FLNB chr3:58118535 3'AG 58118535 Downstream 74bp
chr3 58118608 58118608 1 + G A SKCM 58118613 + 58118593 58118633 41 CACCCCATCTCAGGAGGGACCTTACATGGTCTCAGTTAAAT CACCCCATCTCAGGAAGGACCTTACATGGTCTCAGTTAAAT < 41bp 1 0.0161153939021759 1 0.20160374045372 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58118613 chr3:58118608 synonymous SNV . 0 16 hm5C_associated_SNPs_33821 0 0 1 0 2 FLNB chr3:58118658 5'GT 58118658 Upstream 51bp
chr19 47763920 47763920 1 + C T SKCM 47763913 + 47763893 47763933 41 CCAGGGGCCAGCAAGGGGGGCCGGACTCCTCCACAGCAGGG CCAGGGGCCAGCAAGGGGGGCCGGACTTCTCCACAGCAGGG < 41bp 1 0.468223145444207 1 0.479200810194016 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763913 chr19:47763920 nonsynonymous SNV 0.045 0 28 hm5C_associated_SNPs_33822 0 0 0 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 76bp
chr22 32234801 32234801 1 + C T SKCM 32234816 + 32234796 32234836 41 CGCCCCCGCTGAGCAGTAGCCCACTCTATAGCCGAGGTGAG CGCCCTCGCTGAGCAGTAGCCCACTCTATAGCCGAGGTGAG < 41bp 1 0.149570943331345 1 0.0857721269130707 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32234816 chr22:32234801 nonsynonymous SNV 0.097 3 6 hm5C_associated_SNPs_33823 0 0 0 0 1 DEPDC5 chr22:32234831 5'GT 32234831 Upstream 31bp
chr19 41807520 41807520 1 + C T SKCM 41807534 + 41807514 41807554 41 TTTGTCCCACTGACGAGGACCTAAAAGACCGAACAATAAAG TTTGTCTCACTGACGAGGACCTAAAAGACCGAACAATAAAG < 41bp 1 0.317318042081911 1 0.199053734540939 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41807534 chr19:41807520 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_33825 0 0 1 0 2 HNRNPUL1 chr19:41807441 3'AG 41807441 Downstream 80bp
chr19 41807520 41807520 1 + C T SKCM 41807534 + 41807514 41807554 41 TTTGTCCCACTGACGAGGACCTAAAAGACCGAACAATAAAG TTTGTCTCACTGACGAGGACCTAAAAGACCGAACAATAAAG < 41bp 1 0.317318042081911 1 0.199053734540939 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41807534 chr19:41807520 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_33825 0 0 1 0 2 HNRNPUL1 chr19:41807609 5'GT 41807609 Upstream 90bp
chr1 10239580 10239580 1 + C T SKCM 10239562 + 10239542 10239582 41 ATCATCCTGCGGCACCTGCTCAACTCCCCCACGGACCCCTT ATCATCCTGCGGCACCTGCTCAACTCCCCCACGGACCCTTT < 41bp 1 0.421409098464792 1 0.639266788959503 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10239562 chr1:10239580 synonymous SNV . 0 39 hm5C_associated_SNPs_33826 0 0 1 0 1 UBE4B chr1:10239620 5'GT 10239620 Upstream 41bp
chr1 10239579 10239579 1 + C T SKCM 10239562 + 10239542 10239582 41 ATCATCCTGCGGCACCTGCTCAACTCCCCCACGGACCCCTT ATCATCCTGCGGCACCTGCTCAACTCCCCCACGGACCTCTT < 41bp 1 0.424179014304765 1 0.681045651435852 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10239562 chr1:10239579 nonsynonymous SNV 1.000 5 38 hm5C_associated_SNPs_33827 0 0 1 0 1 UBE4B chr1:10239620 5'GT 10239620 Upstream 42bp
chr19 42853729 42853729 1 + C T SKCM 42853746 + 42853726 42853766 41 TTCCCTCTGCCTGGGCGGGACCACAAGTATGCAGTAGAGAT TTCTCTCTGCCTGGGCGGGACCACAAGTATGCAGTAGAGAT < 41bp 1 0.12000385176611 1 0.154306352138519 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42853746 chr19:42853729 nonsynonymous SNV 0.748 0 4 hm5C_associated_SNPs_33828 0 0 0 0 1 MEGF8 chr19:42853651 3'AG 42853651 Downstream 79bp
chr1 109804140 109804140 1 + C T SKCM 109804156 + 109804136 109804176 41 TTTGCCACAAAGGAGCGCGACGGGTTGCTGTTGTACAATGG TTTGTCACAAAGGAGCGCGACGGGTTGCTGTTGTACAATGG < 41bp 1 0.240129208322536 1 0.275872051715851 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109804156 chr1:109804140 nonsynonymous SNV 0.935 3 5 hm5C_associated_SNPs_33829 0 0 1 0 1 CELSR2 chr1:109804135 3'AG 109804135 Downstream 6bp
chr9 137708903 137708903 1 + C T SKCM 137708906 + 137708886 137708926 41 TACTGGTGAACCAGGTCCATCGGGGCCTCCAGGAAAAAGGG TACTGGTGAACCAGGTCTATCGGGGCCTCCAGGAAAAAGGG < 41bp 1 0.432401163792795 1 0.904654443264008 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137708906 chr9:137708903 nonsynonymous SNV 0.082 3 18 hm5C_associated_SNPs_33831 0 0 0 0 1 COL5A1 chr9:137708872 3'AG 137708872 Downstream 32bp
chr12 132516578 132516578 1 + C T SKCM 132516568 + 132516548 132516588 41 CTCCACTCACAGCCGTACCACAGGTATAAACCTTGTAGAGG CTCCACTCACAGCCGTACCACAGGTATAAATCTTGTAGAGG < 41bp 1 0.192628574140955 1 0.129962801933289 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132516568 chr12:132516578 synonymous SNV . 0 31 hm5C_associated_SNPs_33836 0 0 1 0 1 EP400 chr12:132516498 3'AG 132516498 Downstream 81bp
chr19 36278137 36278137 1 + C T SKCM 36278132 + 36278112 36278152 41 TCCTGCGCCCTGGGGGTGCCCCACCCCCGCCCCCTAAGAAC TCCTGCGCCCTGGGGGTGCCCCACCTCCGCCCCCTAAGAAC < 41bp 1 0.215682303238311 1 0.323006272315979 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36278132 chr19:36278137 synonymous SNV . 0 26 hm5C_associated_SNPs_33837 0 0 0 0 1 ARHGAP33 chr19:36278070 3'AG 36278070 Downstream 68bp
chr1 114215982 114215982 1 + C T SKCM 114215980 + 114215960 114216000 41 CAGTAGAGCTGGAGAGAGGCCCCCGGGGCTTTGGATTCAGC CAGTAGAGCTGGAGAGAGGCCCTCGGGGCTTTGGATTCAGC < 41bp 1 0.0886160500845354 1 0.166339129209518 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAGI3 ENSG00000081026 CDS Human protein_coding chr1:114215980 chr1:114215982 synonymous SNV . 0 23 hm5C_associated_SNPs_33838 0 0 0 0 1 MAGI3 chr1:114215944 3'AG 114215944 Downstream 39bp
chr2 153471384 153471384 1 + G A SKCM 153471368 + 153471348 153471388 41 CCTATTCTGGTTTTTAGAAGCTGAAACACACTGAGAGTGAC CCTATTCTGGTTTTTAGAAGCTGAAACACACTGAGAATGAC < 41bp 1 0.393117536095541 1 0.75548380613327 experiment 1 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153471368 chr2:153471384 nonsynonymous SNV 0.995 5 37 hm5C_associated_SNPs_33839 0 0 1 0 1 FMNL2 chr2:153471365 3'AG 153471365 Downstream 20bp
chr12 53673625 53673625 1 + C T SKCM 53673618 + 53673598 53673638 41 CCTGCCACATCACCCAGCTCCTCCTGACCCTCGGCTGTCCC CCTGCCACATCACCCAGCTCCTCCTGATCCTCGGCTGTCCC < 41bp 1 0.248323698143507 1 0.115392655134201 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53673618 chr12:53673625 nonsynonymous SNV 0.136 0 28 hm5C_associated_SNPs_33840 0 0 1 0 1 ESPL1 chr12:53673650 5'GT 53673650 Upstream 26bp
chr16 19548854 19548854 1 + C T SKCM 19548865 + 19548845 19548885 41 AAAAAGATACCCTAAGGGATCTGGCTTCGTTAACAAGAATA AAAAAGATATCCTAAGGGATCTGGCTTCGTTAACAAGAATA < 41bp 1 0.401904664022124 1 0.293170064687729 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCP110 ENSG00000103540 CDS Human protein_coding chr16:19548865 chr16:19548854 synonymous SNV . 0 10 hm5C_associated_SNPs_33843 0 0 1 0 1 CCP110 chr16:19548909 5'GT 19548909 Upstream 56bp
chr6 133844294 133844294 1 + A T SKCM 133844283 + 133844263 133844303 41 TAGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTG TAGTTTAGGAGGTGCTTTCCCCATTGAGAATTTTTACAGTG < 41bp 1 0.103731029312881 1 0.322654873132706 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844283 chr6:133844294 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_33844 0 0 0 0 1 EYA4 chr6:133844315 5'GT 133844315 Upstream 22bp
chr6 133844294 133844294 1 + A T SKCM 133844284 + 133844264 133844304 41 AGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTGC AGTTTAGGAGGTGCTTTCCCCATTGAGAATTTTTACAGTGC < 41bp 1 0.0718494222176203 1 0.163466393947601 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844284 chr6:133844294 nonsynonymous SNV 1.000 5 31 hm5C_associated_SNPs_33845 0 0 0 0 1 EYA4 chr6:133844315 5'GT 133844315 Upstream 22bp
chr7 142459673 142459673 1 + G A SKCM 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGAAA < 41bp 1 0.678179376741136 1 0.120801448822021 experiment 0.643641246517727 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459673 synonymous SNV . 0 39 hm5C_associated_SNPs_33846 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 49bp
chr7 142459673 142459673 1 + G A SKCM 142459658 + 142459638 142459678 41 AGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAATGA AGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGAAATGA < 41bp 1 0.733962966900412 1 0.413973301649094 experiment 0.532074066199176 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459658 chr7:142459673 synonymous SNV . 0 36 hm5C_associated_SNPs_33847 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 49bp
chr7 142459673 142459673 1 + G A SKCM 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCACAACATCGAAGTCCTGGAGGGAAATGAGCAGTT < 41bp 1 0.528874854363218 1 0.347451388835907 experiment 0.942250291273564 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459673 synonymous SNV . 0 30 hm5C_associated_SNPs_33848 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 49bp
chr7 142459673 142459673 1 + G A SKCM 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG AAGTCCTGGAGGGAAATGAGCAGTTCATCAATGCAGCCAAG < 41bp 1 0.473142444228215 1 0.280224680900574 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459673 synonymous SNV . 0 14 hm5C_associated_SNPs_33849 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 49bp
chr7 142459673 142459673 1 + G A SKCM 142459685 + 142459665 142459705 41 CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT CTGGAGGGAAATGAGCAGTTCATCAATGCAGCCAAGATCAT < 41bp 1 0.60032372534883 1 0.0433344542980194 experiment 0.799352549302341 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459685 chr7:142459673 synonymous SNV . 0 9 hm5C_associated_SNPs_33850 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 49bp
chr7 142459673 142459673 1 + G A SKCM 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAGGGAAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG < 41bp 1 0.655664969756066 1 0.296283066272736 experiment 0.688670060487868 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459673 synonymous SNV . 0 6 hm5C_associated_SNPs_33851 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 49bp
chr7 142459673 142459673 1 + G A SKCM 142459693 + 142459673 142459713 41 GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC AAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC < 41bp 1 0.549288847055328 1 0.0414919555187225 experiment 0.901422305889344 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459693 chr7:142459673 synonymous SNV . 0 1 hm5C_associated_SNPs_33852 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 49bp
chr1 201185664 201185664 1 + G A SKCM 201185656 + 201185636 201185676 41 GCGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGC GCGTCTGCCTCCGCTGGCGGCCCCCAAGAGACAATGGGGGC < 41bp 1 0.0293127628418435 1 0.279846608638763 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185656 chr1:201185664 synonymous SNV . 0 29 hm5C_associated_SNPs_33853 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 83bp
chr1 201185664 201185664 1 + G A SKCM 201185657 + 201185637 201185677 41 CGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCC CGTCTGCCTCCGCTGGCGGCCCCCAAGAGACAATGGGGGCC < 41bp 1 0.17281371029336 1 0.371734142303467 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185657 chr1:201185664 synonymous SNV . 0 28 hm5C_associated_SNPs_33854 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 83bp
chr1 201185664 201185664 1 + G A SKCM 201185658 + 201185638 201185678 41 GTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCG GTCTGCCTCCGCTGGCGGCCCCCAAGAGACAATGGGGGCCG < 41bp 1 0.28912730060149 1 0.455865353345871 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185658 chr1:201185664 synonymous SNV . 0 27 hm5C_associated_SNPs_33855 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 83bp
chr1 201185664 201185664 1 + G A SKCM 201185659 + 201185639 201185679 41 TCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCGG TCTGCCTCCGCTGGCGGCCCCCAAGAGACAATGGGGGCCGG < 41bp 1 0.0993343289840726 1 0.543710291385651 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185659 chr1:201185664 synonymous SNV . 0 26 hm5C_associated_SNPs_33856 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 83bp
chr1 201185664 201185664 1 + G A SKCM 201185660 + 201185640 201185680 41 CTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCGGA CTGCCTCCGCTGGCGGCCCCCAAGAGACAATGGGGGCCGGA < 41bp 1 0.597678155390147 1 0.848706364631653 experiment 0.804643689219707 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185660 chr1:201185664 synonymous SNV . 0 25 hm5C_associated_SNPs_33857 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 83bp
chr1 201185664 201185664 1 + G A SKCM 201185676 + 201185656 201185696 41 CCCCCAAGGGACAATGGGGGCCGGACTGTAGAGTGCTACGT CCCCCAAGAGACAATGGGGGCCGGACTGTAGAGTGCTACGT < 41bp 1 0.300209835616781 1 0.173010021448135 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185676 chr1:201185664 synonymous SNV . 0 9 hm5C_associated_SNPs_33858 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 83bp
chr1 201185664 201185664 1 + G A SKCM 201185677 + 201185657 201185697 41 CCCCAAGGGACAATGGGGGCCGGACTGTAGAGTGCTACGTG CCCCAAGAGACAATGGGGGCCGGACTGTAGAGTGCTACGTG < 41bp 1 0.129225172416135 1 0.138582736253738 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185677 chr1:201185664 synonymous SNV . 0 8 hm5C_associated_SNPs_33859 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 83bp
chr16 50342258 50342258 1 + C T SKCM 50342243 + 50342223 50342263 41 TTCCCTCCTCTCCAGGACGGCGGCACTGGGTGTGTCCTTCG TTCCCTCCTCTCCAGGACGGCGGCACTGGGTGTGTTCTTCG < 41bp 1 0.489099588407648 1 0.323298215866089 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50342243 chr16:50342258 nonsynonymous SNV 0.997 1 36 hm5C_associated_SNPs_33860 0 0 1 0 2 ADCY7 chr16:50342238 3'AG 50342238 Downstream 21bp
chr16 50342258 50342258 1 + C T SKCM 50342243 + 50342223 50342263 41 TTCCCTCCTCTCCAGGACGGCGGCACTGGGTGTGTCCTTCG TTCCCTCCTCTCCAGGACGGCGGCACTGGGTGTGTTCTTCG < 41bp 1 0.489099588407648 1 0.323298215866089 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50342243 chr16:50342258 nonsynonymous SNV 0.997 1 36 hm5C_associated_SNPs_33860 0 0 1 0 2 ADCY7 chr16:50342322 5'GT 50342322 Upstream 65bp
chr11 65978617 65978617 1 + C T SKCM 65978630 + 65978610 65978650 41 TCATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGC TCATTTCTTTAAGCGAGATGCCAACAAGCTGCAGATCATGC < 41bp 1 0.0125151861635478 1 0.0916063487529755 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978630 chr11:65978617 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_33861 0 0 1 0 1 PACS1 chr11:65978605 3'AG 65978605 Downstream 13bp
chr11 65978617 65978617 1 + C T SKCM 65978631 + 65978611 65978651 41 CATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGCT CATTTCTTTAAGCGAGATGCCAACAAGCTGCAGATCATGCT < 41bp 1 0.276069205781007 1 0.415605783462524 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978631 chr11:65978617 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_33862 0 0 1 0 1 PACS1 chr11:65978605 3'AG 65978605 Downstream 13bp
chr4 1742647 1742647 1 + G A SKCM 1742652 + 1742632 1742672 41 TCTGAACTCCATGGAGAAGTCCTTCTCCGACCTCTTCAAGC TCTGAACTCCATGGAAAAGTCCTTCTCCGACCTCTTCAAGC < 41bp 1 0.0208941809302695 1 0.0209521353244781 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TACC3 ENSG00000013810 CDS Human protein_coding chr4:1742652 chr4:1742647 synonymous SNV . 0 16 hm5C_associated_SNPs_33864 0 0 1 0 2 TACC3 chr4:1742553 3'AG 1742553 Downstream 95bp
chr4 1742647 1742647 1 + G A SKCM 1742652 + 1742632 1742672 41 TCTGAACTCCATGGAGAAGTCCTTCTCCGACCTCTTCAAGC TCTGAACTCCATGGAAAAGTCCTTCTCCGACCTCTTCAAGC < 41bp 1 0.0208941809302695 1 0.0209521353244781 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TACC3 ENSG00000013810 CDS Human protein_coding chr4:1742652 chr4:1742647 synonymous SNV . 0 16 hm5C_associated_SNPs_33864 0 0 1 0 2 TACC3 chr4:1742713 5'GT 1742713 Upstream 67bp
chr1 22329551 22329551 1 + G A SKCM 22329556 + 22329536 22329576 41 CGTTGTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCT CGTTGTCCATGGTGAAGATGCGGTCCCCTACAGCTGGCCCT < 41bp 1 0.188997187395292 1 0.263513326644897 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329556 chr1:22329551 synonymous SNV . 0 16 hm5C_associated_SNPs_33865 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 56bp
chr1 22329551 22329551 1 + G A SKCM 22329556 + 22329536 22329576 41 CGTTGTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCT CGTTGTCCATGGTGAAGATGCGGTCCCCTACAGCTGGCCCT < 41bp 1 0.188997187395292 1 0.263513326644897 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329556 chr1:22329551 synonymous SNV . 0 16 hm5C_associated_SNPs_33865 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 31bp
chr1 22329551 22329551 1 + G A SKCM 22329560 + 22329540 22329580 41 GTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCA GTCCATGGTGAAGATGCGGTCCCCTACAGCTGGCCCTGGCA < 41bp 1 0.186262301608334 1 0.0502617061138153 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329560 chr1:22329551 synonymous SNV . 0 12 hm5C_associated_SNPs_33866 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 56bp
chr1 22329551 22329551 1 + G A SKCM 22329560 + 22329540 22329580 41 GTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCA GTCCATGGTGAAGATGCGGTCCCCTACAGCTGGCCCTGGCA < 41bp 1 0.186262301608334 1 0.0502617061138153 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329560 chr1:22329551 synonymous SNV . 0 12 hm5C_associated_SNPs_33866 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 31bp
chr1 22329551 22329551 1 + G A SKCM 22329561 + 22329541 22329581 41 TCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAG TCCATGGTGAAGATGCGGTCCCCTACAGCTGGCCCTGGCAG < 41bp 1 0.223425159491493 1 0.0914362967014313 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329561 chr1:22329551 synonymous SNV . 0 11 hm5C_associated_SNPs_33867 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 56bp
chr1 22329551 22329551 1 + G A SKCM 22329561 + 22329541 22329581 41 TCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAG TCCATGGTGAAGATGCGGTCCCCTACAGCTGGCCCTGGCAG < 41bp 1 0.223425159491493 1 0.0914362967014313 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329561 chr1:22329551 synonymous SNV . 0 11 hm5C_associated_SNPs_33867 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 31bp
chr1 22329551 22329551 1 + G A SKCM 22329562 + 22329542 22329582 41 CCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGG CCATGGTGAAGATGCGGTCCCCTACAGCTGGCCCTGGCAGG < 41bp 1 0.0468567276530168 1 0.107180595397949 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329562 chr1:22329551 synonymous SNV . 0 10 hm5C_associated_SNPs_33868 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 56bp
chr1 22329551 22329551 1 + G A SKCM 22329562 + 22329542 22329582 41 CCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGG CCATGGTGAAGATGCGGTCCCCTACAGCTGGCCCTGGCAGG < 41bp 1 0.0468567276530168 1 0.107180595397949 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329562 chr1:22329551 synonymous SNV . 0 10 hm5C_associated_SNPs_33868 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 31bp
chr1 22329551 22329551 1 + G A SKCM 22329563 + 22329543 22329583 41 CATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGT CATGGTGAAGATGCGGTCCCCTACAGCTGGCCCTGGCAGGT < 41bp 1 0.69201767690045 1 0.377447515726089 experiment 0.6159646461991 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329563 chr1:22329551 synonymous SNV . 0 9 hm5C_associated_SNPs_33869 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 56bp
chr1 22329551 22329551 1 + G A SKCM 22329563 + 22329543 22329583 41 CATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGT CATGGTGAAGATGCGGTCCCCTACAGCTGGCCCTGGCAGGT < 41bp 1 0.69201767690045 1 0.377447515726089 experiment 0.6159646461991 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329563 chr1:22329551 synonymous SNV . 0 9 hm5C_associated_SNPs_33869 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 31bp
chr1 22329551 22329551 1 + G A SKCM 22329566 + 22329546 22329586 41 GGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAG GGTGAAGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAG < 41bp 1 0.57512366154017 1 0.195048838853836 experiment 0.849752676919661 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329566 chr1:22329551 synonymous SNV . 0 6 hm5C_associated_SNPs_33870 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 56bp
chr1 22329551 22329551 1 + G A SKCM 22329566 + 22329546 22329586 41 GGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAG GGTGAAGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAG < 41bp 1 0.57512366154017 1 0.195048838853836 experiment 0.849752676919661 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329566 chr1:22329551 synonymous SNV . 0 6 hm5C_associated_SNPs_33870 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 31bp
chr1 22329551 22329551 1 + G A SKCM 22329569 + 22329549 22329589 41 GAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGC GAAGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGC < 41bp 1 0.333781577704066 1 0.31655216217041 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329569 chr1:22329551 synonymous SNV . 0 3 hm5C_associated_SNPs_33871 0 0 0 0 2 CELA3A chr1:22329496 3'AG 22329496 Downstream 56bp
chr1 22329551 22329551 1 + G A SKCM 22329569 + 22329549 22329589 41 GAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGC GAAGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGC < 41bp 1 0.333781577704066 1 0.31655216217041 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329569 chr1:22329551 synonymous SNV . 0 3 hm5C_associated_SNPs_33871 0 0 0 0 2 CELA3A chr1:22329581 5'GT 22329581 Upstream 31bp
chr2 73477004 73477004 1 + C T SKCM 73476990 + 73476970 73477010 41 CAGTGTGAATGCTCTGTCAGCAGATGTGCTGGGTCGATGCC CAGTGTGAATGCTCTGTCAGCAGATGTGCTGGGTTGATGCC < 41bp 1 0.541978525706448 1 0.535903036594391 experiment 0.916042948587104 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT7 ENSG00000135624 CDS Human protein_coding chr2:73476990 chr2:73477004 stopgain 0.888 0 35 hm5C_associated_SNPs_33872 0 0 1 0 2 CCT7 chr2:73476947 3'AG 73476947 Downstream 58bp
chr2 73477004 73477004 1 + C T SKCM 73476990 + 73476970 73477010 41 CAGTGTGAATGCTCTGTCAGCAGATGTGCTGGGTCGATGCC CAGTGTGAATGCTCTGTCAGCAGATGTGCTGGGTTGATGCC < 41bp 1 0.541978525706448 1 0.535903036594391 experiment 0.916042948587104 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT7 ENSG00000135624 CDS Human protein_coding chr2:73476990 chr2:73477004 stopgain 0.888 0 35 hm5C_associated_SNPs_33872 0 0 1 0 2 CCT7 chr2:73477044 5'GT 73477044 Upstream 41bp
chr2 73477004 73477004 1 + C T SKCM 73477009 + 73476989 73477029 41 GCAGATGTGCTGGGTCGATGCCAGGTGTTTGAAGAGACCCA GCAGATGTGCTGGGTTGATGCCAGGTGTTTGAAGAGACCCA < 41bp 1 0.761735254788104 1 0.46643602848053 experiment 0.476529490423791 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT7 ENSG00000135624 CDS Human protein_coding chr2:73477009 chr2:73477004 stopgain 0.888 0 16 hm5C_associated_SNPs_33873 0 0 1 0 2 CCT7 chr2:73476947 3'AG 73476947 Downstream 58bp
chr2 73477004 73477004 1 + C T SKCM 73477009 + 73476989 73477029 41 GCAGATGTGCTGGGTCGATGCCAGGTGTTTGAAGAGACCCA GCAGATGTGCTGGGTTGATGCCAGGTGTTTGAAGAGACCCA < 41bp 1 0.761735254788104 1 0.46643602848053 experiment 0.476529490423791 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT7 ENSG00000135624 CDS Human protein_coding chr2:73477009 chr2:73477004 stopgain 0.888 0 16 hm5C_associated_SNPs_33873 0 0 1 0 2 CCT7 chr2:73477044 5'GT 73477044 Upstream 41bp
chr14 39645288 39645288 1 + C T SKCM 39645306 + 39645286 39645326 41 ATCCAAGCCAGATTGCTGGCCCTTTCTGGTCCTGGTGGAGG ATTCAAGCCAGATTGCTGGCCCTTTCTGGTCCTGGTGGAGG < 41bp 1 0.0288254789148212 1 0.0179023146629333 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PNN ENSG00000100941 CDS Human protein_coding chr14:39645306 chr14:39645288 synonymous SNV . 0 3 hm5C_associated_SNPs_33874 0 0 1 0 2 PNN chr14:39645282 3'AG 39645282 Downstream 7bp
chr14 39645288 39645288 1 + C T SKCM 39645306 + 39645286 39645326 41 ATCCAAGCCAGATTGCTGGCCCTTTCTGGTCCTGGTGGAGG ATTCAAGCCAGATTGCTGGCCCTTTCTGGTCCTGGTGGAGG < 41bp 1 0.0288254789148212 1 0.0179023146629333 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PNN ENSG00000100941 CDS Human protein_coding chr14:39645306 chr14:39645288 synonymous SNV . 0 3 hm5C_associated_SNPs_33874 0 0 1 0 2 PNN chr14:39645353 5'GT 39645353 Upstream 66bp
chr14 104124103 104124103 1 + T C SKCM 104124107 + 104124087 104124127 41 AAATATGATGACGACATTTCCCCATCCGTGAGTGGCTCTGT AAATATGATGACGACACTTCCCCATCCGTGAGTGGCTCTGT < 41bp 1 0.0873228229708543 1 0.234586805105209 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104124107 chr14:104124103 nonsynonymous SNV 0.907 0 17 hm5C_associated_SNPs_33875 0 0 1 0 1 KLC1 chr14:104124113 5'GT 104124113 Upstream 11bp
chr14 104124103 104124103 1 + T C SKCM 104124108 + 104124088 104124128 41 AATATGATGACGACATTTCCCCATCCGTGAGTGGCTCTGTA AATATGATGACGACACTTCCCCATCCGTGAGTGGCTCTGTA < 41bp 1 0.040203676664756 1 0.129195541143417 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104124108 chr14:104124103 nonsynonymous SNV 0.907 0 16 hm5C_associated_SNPs_33876 0 0 1 0 1 KLC1 chr14:104124113 5'GT 104124113 Upstream 11bp
chr14 104124103 104124103 1 + T C SKCM 104124112 + 104124092 104124132 41 TGATGACGACATTTCCCCATCCGTGAGTGGCTCTGTAGCAA TGATGACGACACTTCCCCATCCGTGAGTGGCTCTGTAGCAA < 41bp 1 0.176248477415911 1 0.232467800378799 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104124112 chr14:104124103 nonsynonymous SNV 0.907 0 12 hm5C_associated_SNPs_33877 0 0 1 0 1 KLC1 chr14:104124113 5'GT 104124113 Upstream 11bp
chr22 38021897 38021897 1 + C G SKCM 38021903 + 38021883 38021923 41 CCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAG CCCTGGCGAGCAGGGCAGCCCTGAGCAGCCCAGTGCCTCAG < 41bp 1 0.657881630058163 1 0.156625270843506 experiment 0.684236739883673 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38021903 chr22:38021897 nonsynonymous SNV 0.004 0 15 hm5C_associated_SNPs_33878 0 0 1 0 2 GGA1 chr22:38021804 3'AG 38021804 Downstream 94bp
chr22 38021897 38021897 1 + C G SKCM 38021903 + 38021883 38021923 41 CCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAG CCCTGGCGAGCAGGGCAGCCCTGAGCAGCCCAGTGCCTCAG < 41bp 1 0.657881630058163 1 0.156625270843506 experiment 0.684236739883673 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38021903 chr22:38021897 nonsynonymous SNV 0.004 0 15 hm5C_associated_SNPs_33878 0 0 1 0 2 GGA1 chr22:38021956 5'GT 38021956 Upstream 60bp
chr16 57685239 57685239 1 + C T SKCM 57685240 + 57685220 57685260 41 TCGAGAACTCCGAAGAGGCCCTCACAGTCCATGCCCCTTTC TCGAGAACTCCGAAGAGGCTCTCACAGTCCATGCCCCTTTC < 41bp 1 0.380329168965314 1 0.0605655610561371 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRG1 ENSG00000205336 CDS Human protein_coding chr16:57685240 chr16:57685239 nonsynonymous SNV 0.160 0 20 hm5C_associated_SNPs_33879 0 0 1 0 1 ADGRG1 chr16:57685155 3'AG 57685155 Downstream 85bp
chr4 166408639 166408639 1 + G A SKCM 166408636 + 166408616 166408656 41 AGCAACTGTTTTGAGATCACCGTGGAGCTTAGCTGTGAGAA AGCAACTGTTTTGAGATCACCGTAGAGCTTAGCTGTGAGAA < 41bp 1 0.279520573237889 1 0.622668623924255 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CPE ENSG00000109472 CDS Human protein_coding chr4:166408636 chr4:166408639 synonymous SNV . 0 24 hm5C_associated_SNPs_33880 0 0 1 0 2 CPE chr4:166408590 3'AG 166408590 Downstream 50bp
chr4 166408639 166408639 1 + G A SKCM 166408636 + 166408616 166408656 41 AGCAACTGTTTTGAGATCACCGTGGAGCTTAGCTGTGAGAA AGCAACTGTTTTGAGATCACCGTAGAGCTTAGCTGTGAGAA < 41bp 1 0.279520573237889 1 0.622668623924255 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CPE ENSG00000109472 CDS Human protein_coding chr4:166408636 chr4:166408639 synonymous SNV . 0 24 hm5C_associated_SNPs_33880 0 0 1 0 2 CPE chr4:166408729 5'GT 166408729 Upstream 91bp
chr11 108559762 108559762 1 + C T SKCM 108559748 + 108559728 108559768 41 ATTCCTTTTTGAGAAGCCATCTGAAGAAGAAGAGCATTGTA ATTCCTTTTTGAGAAGCCATCTGAAGAAGAAGAGTATTGTA < 41bp 1 0.610253325242614 1 0.734336256980896 experiment 0.779493349514772 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX10 ENSG00000178105 CDS Human protein_coding chr11:108559748 chr11:108559762 synonymous SNV . 0 35 hm5C_associated_SNPs_33881 0 0 0 0 2 DDX10 chr11:108559663 3'AG 108559663 Downstream 100bp
chr11 108559762 108559762 1 + C T SKCM 108559748 + 108559728 108559768 41 ATTCCTTTTTGAGAAGCCATCTGAAGAAGAAGAGCATTGTA ATTCCTTTTTGAGAAGCCATCTGAAGAAGAAGAGTATTGTA < 41bp 1 0.610253325242614 1 0.734336256980896 experiment 0.779493349514772 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX10 ENSG00000178105 CDS Human protein_coding chr11:108559748 chr11:108559762 synonymous SNV . 0 35 hm5C_associated_SNPs_33881 0 0 0 0 2 DDX10 chr11:108559789 5'GT 108559789 Upstream 28bp
chr19 10935753 10935753 1 + C T SKCM 10935765 + 10935745 10935785 41 GATGGGGCCCAGGAGAACACCTTCTCCATGGACCCCCAACT GATGGGGCTCAGGAGAACACCTTCTCCATGGACCCCCAACT < 41bp 1 0.167779419543544 1 0.138271629810333 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10935765 chr19:10935753 synonymous SNV . 0 9 hm5C_associated_SNPs_33882 0 0 1 0 1 DNM2 chr19:10935733 3'AG 10935733 Downstream 21bp
chr4 7026944 7026944 1 + C T SKCM 7026933 + 7026913 7026953 41 AGGACCTGCCCGCCGAGGAGCTGTTTGCCTCCATCGCCACG AGGACCTGCCCGCCGAGGAGCTGTTTGCCTCTATCGCCACG < 41bp 1 0.24477580322908 1 0.0553560256958008 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBC1D14 ENSG00000132405 CDS Human protein_coding chr4:7026933 chr4:7026944 synonymous SNV . 0 32 hm5C_associated_SNPs_33883 0 0 1 0 1 TBC1D14 chr4:7026989 5'GT 7026989 Upstream 46bp
chr6 133783593 133783593 1 + G A SKCM 133783602 + 133783582 133783622 41 CAGACAGGACAGCCCTACAGCTTGCCCACTTACGGTATTTC CAGACAGGACAACCCTACAGCTTGCCCACTTACGGTATTTC < 41bp 1 0.0593353107425437 1 0.043950617313385 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133783602 chr6:133783593 synonymous SNV . 0 12 hm5C_associated_SNPs_33884 0 0 0 0 1 EYA4 chr6:133783615 5'GT 133783615 Upstream 23bp
chr10 60580162 60580162 1 + C T SKCM 60580149 + 60580129 60580169 41 ATCGATCTTCAGACATTCCTCACTCTCACAGATCAGGATCT ATCGATCTTCAGACATTCCTCACTCTCACAGATTAGGATCT < 41bp 1 0.0886036208651317 1 0.153360158205032 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60580149 chr10:60580162 stopgain 1.000 1 34 hm5C_associated_SNPs_33888 0 0 1 0 2 BICC1 chr10:60580129 3'AG 60580129 Downstream 34bp
chr10 60580162 60580162 1 + C T SKCM 60580149 + 60580129 60580169 41 ATCGATCTTCAGACATTCCTCACTCTCACAGATCAGGATCT ATCGATCTTCAGACATTCCTCACTCTCACAGATTAGGATCT < 41bp 1 0.0886036208651317 1 0.153360158205032 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60580149 chr10:60580162 stopgain 1.000 1 34 hm5C_associated_SNPs_33888 0 0 1 0 2 BICC1 chr10:60580228 5'GT 60580228 Upstream 67bp
chr1 200869295 200869295 1 + C T SKCM 200869306 + 200869286 200869326 41 CCCAAGGTTCGCCGCAGGATCGGAGCGGCTTACAAACTGGA CCCAAGGTTTGCCGCAGGATCGGAGCGGCTTACAAACTGGA < 41bp 1 0.618564640165337 1 0.534213781356812 experiment 0.762870719669326 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200869306 chr1:200869295 nonsynonymous SNV 0.987 4 10 hm5C_associated_SNPs_33889 0 0 1 0 2 C1orf106 chr1:200869232 3'AG 200869232 Downstream 64bp
chr1 200869295 200869295 1 + C T SKCM 200869306 + 200869286 200869326 41 CCCAAGGTTCGCCGCAGGATCGGAGCGGCTTACAAACTGGA CCCAAGGTTTGCCGCAGGATCGGAGCGGCTTACAAACTGGA < 41bp 1 0.618564640165337 1 0.534213781356812 experiment 0.762870719669326 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200869306 chr1:200869295 nonsynonymous SNV 0.987 4 10 hm5C_associated_SNPs_33889 0 0 1 0 2 C1orf106 chr1:200869348 5'GT 200869348 Upstream 54bp
chr20 2844864 2844864 1 + C T SKCM 2844855 + 2844835 2844875 41 ATGAGCCACGCTCAGGGGAGCAGGTACCCCTTCTCCTAAAG ATGAGCCACGCTCAGGGGAGCAGGTACCCTTTCTCCTAAAG < 41bp 1 0.435530497446684 1 0.460968494415283 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2844855 chr20:2844864 nonsynonymous SNV 0.983 4 30 hm5C_associated_SNPs_33890 0 0 0 0 1 VPS16 chr20:2844933 5'GT 2844933 Upstream 70bp
chr9 131296136 131296136 1 + G A SKCM 131296139 + 131296119 131296159 41 TCCACCCCAGAGTGGGGGACCTCATTCTTGCTCATCTACAT TCCACCCCAGAGTGGGGAACCTCATTCTTGCTCATCTACAT < 41bp 1 0.416607754013311 1 0.0658001601696014 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GLE1 ENSG00000119392 CDS Human protein_coding chr9:131296139 chr9:131296136 nonsynonymous SNV 0.981 1 18 hm5C_associated_SNPs_33891 0 0 1 0 2 GLE1 chr9:131296040 3'AG 131296040 Downstream 97bp
chr9 131296136 131296136 1 + G A SKCM 131296139 + 131296119 131296159 41 TCCACCCCAGAGTGGGGGACCTCATTCTTGCTCATCTACAT TCCACCCCAGAGTGGGGAACCTCATTCTTGCTCATCTACAT < 41bp 1 0.416607754013311 1 0.0658001601696014 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GLE1 ENSG00000119392 CDS Human protein_coding chr9:131296139 chr9:131296136 nonsynonymous SNV 0.981 1 18 hm5C_associated_SNPs_33891 0 0 1 0 2 GLE1 chr9:131296230 5'GT 131296230 Upstream 95bp
chr19 47111768 47111768 1 + C T SKCM 47111772 + 47111752 47111792 41 TGACTTCCCGGAGTTCCTGACCATGATGGCCAGAAAGATGA TGACTTCCCGGAGTTCTTGACCATGATGGCCAGAAAGATGA < 41bp 1 0.115594195930031 1 0.0447540581226349 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111772 chr19:47111768 synonymous SNV . 0 17 hm5C_associated_SNPs_33892 0 0 1 0 2 CALM3 chr19:47111739 3'AG 47111739 Downstream 30bp
chr19 47111768 47111768 1 + C T SKCM 47111772 + 47111752 47111792 41 TGACTTCCCGGAGTTCCTGACCATGATGGCCAGAAAGATGA TGACTTCCCGGAGTTCTTGACCATGATGGCCAGAAAGATGA < 41bp 1 0.115594195930031 1 0.0447540581226349 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111772 chr19:47111768 synonymous SNV . 0 17 hm5C_associated_SNPs_33892 0 0 1 0 2 CALM3 chr19:47111845 5'GT 47111845 Upstream 78bp
chr19 47111768 47111768 1 + C T SKCM 47111782 + 47111762 47111802 41 GAGTTCCTGACCATGATGGCCAGAAAGATGAAGGACACAGA GAGTTCTTGACCATGATGGCCAGAAAGATGAAGGACACAGA < 41bp 1 0.534970464969816 1 0.672411978244781 experiment 0.930059070060368 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111782 chr19:47111768 synonymous SNV . 0 7 hm5C_associated_SNPs_33893 0 0 1 0 2 CALM3 chr19:47111739 3'AG 47111739 Downstream 30bp
chr19 47111768 47111768 1 + C T SKCM 47111782 + 47111762 47111802 41 GAGTTCCTGACCATGATGGCCAGAAAGATGAAGGACACAGA GAGTTCTTGACCATGATGGCCAGAAAGATGAAGGACACAGA < 41bp 1 0.534970464969816 1 0.672411978244781 experiment 0.930059070060368 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111782 chr19:47111768 synonymous SNV . 0 7 hm5C_associated_SNPs_33893 0 0 1 0 2 CALM3 chr19:47111845 5'GT 47111845 Upstream 78bp
chr10 71243603 71243603 1 + C T SKCM 71243594 + 71243574 71243614 41 TGGTCTCCTTCATTGGTGTGCTGGCGTCCCTCCGTGACAAC TGGTCTCCTTCATTGGTGTGCTGGCGTCCTTCCGTGACAAC < 41bp 1 0.448263910303391 1 0.229879021644592 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243594 chr10:71243603 nonsynonymous SNV 0.991 4 30 hm5C_associated_SNPs_33894 0 0 1 0 1 TSPAN15 chr10:71243632 5'GT 71243632 Upstream 30bp
chr10 71243603 71243603 1 + C T SKCM 71243598 + 71243578 71243618 41 CTCCTTCATTGGTGTGCTGGCGTCCCTCCGTGACAACCTGT CTCCTTCATTGGTGTGCTGGCGTCCTTCCGTGACAACCTGT < 41bp 1 0.147801483502549 1 0.240323930978775 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243598 chr10:71243603 nonsynonymous SNV 0.991 4 26 hm5C_associated_SNPs_33895 0 0 1 0 1 TSPAN15 chr10:71243632 5'GT 71243632 Upstream 30bp
chr10 71243603 71243603 1 + C T SKCM 71243601 + 71243581 71243621 41 CTTCATTGGTGTGCTGGCGTCCCTCCGTGACAACCTGTACC CTTCATTGGTGTGCTGGCGTCCTTCCGTGACAACCTGTACC < 41bp 1 0.0197475462204182 1 0.0970612168312073 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243601 chr10:71243603 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_33896 0 0 1 0 1 TSPAN15 chr10:71243632 5'GT 71243632 Upstream 30bp
chr10 71243603 71243603 1 + C T SKCM 71243606 + 71243586 71243626 41 TTGGTGTGCTGGCGTCCCTCCGTGACAACCTGTACCTTCTC TTGGTGTGCTGGCGTCCTTCCGTGACAACCTGTACCTTCTC < 41bp 1 0.724071457711555 1 0.811131358146667 experiment 0.55185708457689 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243606 chr10:71243603 nonsynonymous SNV 0.991 4 18 hm5C_associated_SNPs_33897 0 0 1 0 1 TSPAN15 chr10:71243632 5'GT 71243632 Upstream 30bp
chr19 47111767 47111767 1 + C T SKCM 47111772 + 47111752 47111792 41 TGACTTCCCGGAGTTCCTGACCATGATGGCCAGAAAGATGA TGACTTCCCGGAGTTTCTGACCATGATGGCCAGAAAGATGA < 41bp 1 0.102249721573921 1 0.0366709232330322 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111772 chr19:47111767 synonymous SNV . 0 16 hm5C_associated_SNPs_33898 0 0 1 0 2 CALM3 chr19:47111739 3'AG 47111739 Downstream 29bp
chr19 47111767 47111767 1 + C T SKCM 47111772 + 47111752 47111792 41 TGACTTCCCGGAGTTCCTGACCATGATGGCCAGAAAGATGA TGACTTCCCGGAGTTTCTGACCATGATGGCCAGAAAGATGA < 41bp 1 0.102249721573921 1 0.0366709232330322 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111772 chr19:47111767 synonymous SNV . 0 16 hm5C_associated_SNPs_33898 0 0 1 0 2 CALM3 chr19:47111845 5'GT 47111845 Upstream 79bp
chr19 47111767 47111767 1 + C T SKCM 47111782 + 47111762 47111802 41 GAGTTCCTGACCATGATGGCCAGAAAGATGAAGGACACAGA GAGTTTCTGACCATGATGGCCAGAAAGATGAAGGACACAGA < 41bp 1 0.572671079715508 1 0.758631587028503 experiment 0.854657840568984 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111782 chr19:47111767 synonymous SNV . 0 6 hm5C_associated_SNPs_33899 0 0 1 0 2 CALM3 chr19:47111739 3'AG 47111739 Downstream 29bp
chr19 47111767 47111767 1 + C T SKCM 47111782 + 47111762 47111802 41 GAGTTCCTGACCATGATGGCCAGAAAGATGAAGGACACAGA GAGTTTCTGACCATGATGGCCAGAAAGATGAAGGACACAGA < 41bp 1 0.572671079715508 1 0.758631587028503 experiment 0.854657840568984 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111782 chr19:47111767 synonymous SNV . 0 6 hm5C_associated_SNPs_33899 0 0 1 0 2 CALM3 chr19:47111845 5'GT 47111845 Upstream 79bp
chr15 69652438 69652438 1 + C T SKCM 69652440 + 69652420 69652460 41 ATGCTGAGCCTGAAGCTCCCCAGGCTGTTTAGCATAGACCA ATGCTGAGCCTGAAGCTCTCCAGGCTGTTTAGCATAGACCA < 41bp 1 0.647520922910882 1 0.879960238933563 experiment 0.704958154178235 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69652440 chr15:69652438 nonsynonymous SNV 0.619 4 19 hm5C_associated_SNPs_33900 0 0 0 0 1 PAQR5 chr15:69652470 5'GT 69652470 Upstream 33bp
chr16 12618679 12618679 1 + C T SKCM 12618659 + 12618639 12618679 41 CCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC CCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCT < 41bp 1 0.141778629568943 1 0.268448114395142 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12618659 chr16:12618679 stopgain 0.707 1 41 hm5C_associated_SNPs_33901 0 0 1 0 1 SNX29 chr16:12618698 5'GT 12618698 Upstream 20bp
chr17 80012379 80012379 1 + C T SKCM 80012377 + 80012357 80012397 41 GCCATCCTGATGGCCAGGTCCTCTCTCAGGGAGCTGCAGAA GCCATCCTGATGGCCAGGTCCTTTCTCAGGGAGCTGCAGAA < 41bp 1 0.0455082444988424 1 0.0878946185112 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GPS1 ENSG00000169727 CDS Human protein_coding chr17:80012377 chr17:80012379 nonsynonymous SNV 0.086 0 23 hm5C_associated_SNPs_33904 0 0 0 0 1 GPS1 chr17:80012374 3'AG 80012374 Downstream 6bp
chr14 21464975 21464975 1 + T G SKCM 21464984 + 21464964 21465004 41 GTGTCAGCTCCTGGGGAGATCTTTTACCTGTGCTTACTCCG GTGTCAGCTCCGGGGGAGATCTTTTACCTGTGCTTACTCCG < 41bp 1 0.201153414106641 1 0.107245057821274 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control METTL17 ENSG00000165792 CDS Human protein_coding chr14:21464984 chr14:21464975 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_33916 0 0 1 0 2 METTL17 chr14:21464944 3'AG 21464944 Downstream 32bp
chr14 21464975 21464975 1 + T G SKCM 21464984 + 21464964 21465004 41 GTGTCAGCTCCTGGGGAGATCTTTTACCTGTGCTTACTCCG GTGTCAGCTCCGGGGGAGATCTTTTACCTGTGCTTACTCCG < 41bp 1 0.201153414106641 1 0.107245057821274 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control METTL17 ENSG00000165792 CDS Human protein_coding chr14:21464984 chr14:21464975 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_33916 0 0 1 0 2 METTL17 chr14:21464971 3'AG 21464971 Downstream 5bp
chr19 42839490 42839490 1 + A C SKCM 42839497 + 42839477 42839517 41 CCTCGTCCTATACAACTTCTCCGCCAACACCTGGGAGTCTT CCTCGTCCTATACCACTTCTCCGCCAACACCTGGGAGTCTT < 41bp 1 0.116417533813339 1 0.355312764644623 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42839497 chr19:42839490 nonsynonymous SNV 0.992 2 14 hm5C_associated_SNPs_33917 0 0 1 0 2 MEGF8 chr19:42839449 3'AG 42839449 Downstream 42bp
chr19 42839490 42839490 1 + A C SKCM 42839497 + 42839477 42839517 41 CCTCGTCCTATACAACTTCTCCGCCAACACCTGGGAGTCTT CCTCGTCCTATACCACTTCTCCGCCAACACCTGGGAGTCTT < 41bp 1 0.116417533813339 1 0.355312764644623 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42839497 chr19:42839490 nonsynonymous SNV 0.992 2 14 hm5C_associated_SNPs_33917 0 0 1 0 2 MEGF8 chr19:42839537 5'GT 42839537 Upstream 48bp
chr7 142459700 142459700 1 + G A SKCM 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAA < 41bp 1 0.530536555209077 1 0.260979413986206 experiment 0.938926889581845 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459700 synonymous SNV . 0 41 hm5C_associated_SNPs_33918 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 76bp
chr7 142459700 142459700 1 + G A SKCM 142459685 + 142459665 142459705 41 CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAAATCAT < 41bp 1 0.627645811949578 1 0.0490031838417053 experiment 0.744708376100843 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459685 chr7:142459700 synonymous SNV . 0 36 hm5C_associated_SNPs_33919 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 76bp
chr7 142459700 142459700 1 + G A SKCM 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAGGGGAATGAGCAGTTCATCAATGCAGCCAAAATCATCCG < 41bp 1 0.653103259883232 1 0.380787134170532 experiment 0.693793480233535 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459700 synonymous SNV . 0 33 hm5C_associated_SNPs_33920 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 76bp
chr7 142459700 142459700 1 + G A SKCM 142459693 + 142459673 142459713 41 GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC GAATGAGCAGTTCATCAATGCAGCCAAAATCATCCGCCACC < 41bp 1 0.533703751108039 1 0.0425055027008057 experiment 0.932592497783921 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459693 chr7:142459700 synonymous SNV . 0 28 hm5C_associated_SNPs_33921 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 76bp
chr7 142459700 142459700 1 + G A SKCM 142459696 + 142459676 142459716 41 TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC TGAGCAGTTCATCAATGCAGCCAAAATCATCCGCCACCCCC < 41bp 1 0.474724858208625 1 0.354511022567749 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459696 chr7:142459700 synonymous SNV . 0 25 hm5C_associated_SNPs_33922 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 76bp
chr7 142459700 142459700 1 + G A SKCM 142459697 + 142459677 142459717 41 GAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCCA GAGCAGTTCATCAATGCAGCCAAAATCATCCGCCACCCCCA < 41bp 1 0.7611176485352 1 0.194671124219894 experiment 0.4777647029296 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459697 chr7:142459700 synonymous SNV . 0 24 hm5C_associated_SNPs_33923 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 76bp
chr7 142459700 142459700 1 + G A SKCM 142459703 + 142459683 142459723 41 TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGA TTCATCAATGCAGCCAAAATCATCCGCCACCCCCAATACGA < 41bp 1 0.387830562269924 1 0.416826575994492 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459703 chr7:142459700 synonymous SNV . 0 18 hm5C_associated_SNPs_33924 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 76bp
chr7 142459700 142459700 1 + G A SKCM 142459706 + 142459686 142459726 41 ATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAG ATCAATGCAGCCAAAATCATCCGCCACCCCCAATACGACAG < 41bp 1 0.299077452474468 1 0.352719664573669 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459706 chr7:142459700 synonymous SNV . 0 15 hm5C_associated_SNPs_33925 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 76bp
chr7 142459700 142459700 1 + G A SKCM 142459707 + 142459687 142459727 41 TCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGG TCAATGCAGCCAAAATCATCCGCCACCCCCAATACGACAGG < 41bp 1 0.744360413188331 1 0.359713166952133 experiment 0.511279173623337 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459707 chr7:142459700 synonymous SNV . 0 14 hm5C_associated_SNPs_33926 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 76bp
chr7 142459700 142459700 1 + G A SKCM 142459709 + 142459689 142459729 41 AATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA AATGCAGCCAAAATCATCCGCCACCCCCAATACGACAGGAA < 41bp 1 0.0971072070014137 1 0.0882189273834229 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459709 chr7:142459700 synonymous SNV . 0 12 hm5C_associated_SNPs_33927 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 76bp
chr7 142459700 142459700 1 + G A SKCM 142459710 + 142459690 142459730 41 ATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG ATGCAGCCAAAATCATCCGCCACCCCCAATACGACAGGAAG < 41bp 1 0.180179182804137 1 0.120152622461319 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459710 chr7:142459700 synonymous SNV . 0 11 hm5C_associated_SNPs_33928 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 76bp
chr7 142459700 142459700 1 + G A SKCM 142459712 + 142459692 142459732 41 GCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC GCAGCCAAAATCATCCGCCACCCCCAATACGACAGGAAGAC < 41bp 1 0.126997189981152 1 0.108436226844788 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459712 chr7:142459700 synonymous SNV . 0 9 hm5C_associated_SNPs_33929 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 76bp
chr7 142459700 142459700 1 + G A SKCM 142459713 + 142459693 142459733 41 CAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT CAGCCAAAATCATCCGCCACCCCCAATACGACAGGAAGACT < 41bp 1 0.457918071099766 1 0.55137437582016 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459713 chr7:142459700 synonymous SNV . 0 8 hm5C_associated_SNPs_33930 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 76bp
chr7 142459700 142459700 1 + G A SKCM 142459714 + 142459694 142459734 41 AGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC AGCCAAAATCATCCGCCACCCCCAATACGACAGGAAGACTC < 41bp 1 0.518404704192129 1 0.215316474437714 experiment 0.963190591615741 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459714 chr7:142459700 synonymous SNV . 0 7 hm5C_associated_SNPs_33931 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 76bp
chr7 142459700 142459700 1 + G A SKCM 142459715 + 142459695 142459735 41 GCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCT GCCAAAATCATCCGCCACCCCCAATACGACAGGAAGACTCT < 41bp 1 0.240277346120935 1 0.171288132667542 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459715 chr7:142459700 synonymous SNV . 0 6 hm5C_associated_SNPs_33932 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 76bp
chr7 142459700 142459700 1 + G A SKCM 142459716 + 142459696 142459736 41 CCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCTG CCAAAATCATCCGCCACCCCCAATACGACAGGAAGACTCTG < 41bp 1 0.428525454635056 1 0.108257383108139 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459716 chr7:142459700 synonymous SNV . 0 5 hm5C_associated_SNPs_33933 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 76bp
chr13 49765165 49765165 1 + A T SKCM 49765179 + 49765159 49765199 41 ATCTTTACTTGTGCAGACTCCAGCTGTGCCTCCTGGCCCAT ATCTTTTCTTGTGCAGACTCCAGCTGTGCCTCCTGGCCCAT < 41bp 1 0.592226232164834 1 0.271558225154877 experiment 0.815547535670333 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49765179 chr13:49765165 nonsynonymous SNV 0.998 2 7 hm5C_associated_SNPs_33934 0 0 1 0 2 FNDC3A chr13:49765151 3'AG 49765151 Downstream 15bp
chr13 49765165 49765165 1 + A T SKCM 49765179 + 49765159 49765199 41 ATCTTTACTTGTGCAGACTCCAGCTGTGCCTCCTGGCCCAT ATCTTTTCTTGTGCAGACTCCAGCTGTGCCTCCTGGCCCAT < 41bp 1 0.592226232164834 1 0.271558225154877 experiment 0.815547535670333 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49765179 chr13:49765165 nonsynonymous SNV 0.998 2 7 hm5C_associated_SNPs_33934 0 0 1 0 2 FNDC3A chr13:49765256 5'GT 49765256 Upstream 92bp
chr11 67378014 67378014 1 + C T SKCM 67378025 + 67378005 67378045 41 AAGCCCCGCCTGAAGCCCCCCTTCCCCGCAGACGTGGGTAA AAGCCCCGCTTGAAGCCCCCCTTCCCCGCAGACGTGGGTAA < 41bp 1 0.116993105750324 1 0.15353137254715 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67378025 chr11:67378014 synonymous SNV . 0 10 hm5C_associated_SNPs_33935 0 0 1 0 1 NDUFV1 chr11:67378041 5'GT 67378041 Upstream 28bp
chr2 220346385 220346385 1 + G A SKCM 220346365 + 220346345 220346385 41 CTCATTCATTCACAGGAGACCTACCGCAGAAGAGACCCTAG CTCATTCATTCACAGGAGACCTACCGCAGAAGAGACCCTAA < 41bp 1 0.0285926634439864 1 0.129580229520798 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220346365 chr2:220346385 nonsynonymous SNV 0.998 0 41 hm5C_associated_SNPs_33937 0 0 0 0 2 SPEG chr2:220346360 3'AG 220346360 Downstream 26bp
chr2 220346385 220346385 1 + G A SKCM 220346365 + 220346345 220346385 41 CTCATTCATTCACAGGAGACCTACCGCAGAAGAGACCCTAG CTCATTCATTCACAGGAGACCTACCGCAGAAGAGACCCTAA < 41bp 1 0.0285926634439864 1 0.129580229520798 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220346365 chr2:220346385 nonsynonymous SNV 0.998 0 41 hm5C_associated_SNPs_33937 0 0 0 0 2 SPEG chr2:220346402 5'GT 220346402 Upstream 18bp
chr3 130683792 130683792 1 + G A SKCM 130683793 + 130683773 130683813 41 TAATGATTTAATTCTTTAGGCTGCTGTAATGTGATTTGTTC TAATGATTTAATTCTTTAGACTGCTGTAATGTGATTTGTTC < 41bp 1 0.237936983463356 1 0.0694016516208649 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130683793 chr3:130683792 nonsynonymous SNV 0.858 5 20 hm5C_associated_SNPs_33938 0 0 1 0 2 ATP2C1 chr3:130683792 3'AG 130683792 Downstream 1bp
chr3 130683792 130683792 1 + G A SKCM 130683793 + 130683773 130683813 41 TAATGATTTAATTCTTTAGGCTGCTGTAATGTGATTTGTTC TAATGATTTAATTCTTTAGACTGCTGTAATGTGATTTGTTC < 41bp 1 0.237936983463356 1 0.0694016516208649 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130683793 chr3:130683792 nonsynonymous SNV 0.858 5 20 hm5C_associated_SNPs_33938 0 0 1 0 2 ATP2C1 chr3:130683889 5'GT 130683889 Upstream 98bp
chr13 76414540 76414540 1 + C T SKCM 76414530 + 76414510 76414550 41 CTCTGATAACTGGTTAGCTTCCAGTTCCAACCATCAGTGCC CTCTGATAACTGGTTAGCTTCCAGTTCCAATCATCAGTGCC < 41bp 1 0.176134073832388 1 0.061181366443634 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76414530 chr13:76414540 nonsynonymous SNV 0.994 4 31 hm5C_associated_SNPs_33939 0 0 1 0 2 LMO7 chr13:76414527 3'AG 76414527 Downstream 14bp
chr13 76414540 76414540 1 + C T SKCM 76414530 + 76414510 76414550 41 CTCTGATAACTGGTTAGCTTCCAGTTCCAACCATCAGTGCC CTCTGATAACTGGTTAGCTTCCAGTTCCAATCATCAGTGCC < 41bp 1 0.176134073832388 1 0.061181366443634 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76414530 chr13:76414540 nonsynonymous SNV 0.994 4 31 hm5C_associated_SNPs_33939 0 0 1 0 2 LMO7 chr13:76414631 5'GT 76414631 Upstream 92bp
chr2 3628396 3628396 1 + T C SKCM 3628408 + 3628388 3628428 41 CTTGTAGGTTGAAACTTTTTCTGGTGTCTATAAGAAGCTCA CTTGTAGGCTGAAACTTTTTCTGGTGTCTATAAGAAGCTCA < 41bp 1 0.717986962706261 1 0.238430142402649 experiment 0.564026074587477 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS7 ENSG00000171863 CDS Human protein_coding chr2:3628408 chr2:3628396 nonsynonymous SNV 0.991 2 9 hm5C_associated_SNPs_33940 0 0 1 0 1 RPS7 chr2:3628395 3'AG 3628395 Downstream 2bp
chr22 23596118 23596118 1 + G A SKCM 23596125 + 23596105 23596145 41 AGCAGCAAGGGCAGGGGCAGCCGGGATGCGCTGGTCTCGGG AGCAGCAAGGGCAAGGGCAGCCGGGATGCGCTGGTCTCGGG < 41bp 1 0.569924030605987 1 0.759303748607635 experiment 0.860151938788026 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23596125 chr22:23596118 nonsynonymous SNV 0.995 2 14 hm5C_associated_SNPs_33942 0 0 1 0 1 BCR chr22:23596167 5'GT 23596167 Upstream 50bp
chr3 157841665 157841665 1 + C T SKCM 157841658 + 157841638 157841678 41 ATTATATTTTATTTCAGACGCAGGCATCGATCAAGCAGTAG ATTATATTTTATTTCAGACGCAGGCATTGATCAAGCAGTAG < 41bp 1 0.335689523701127 1 0.209890812635422 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157841658 chr3:157841665 stopgain 0.997 1 28 hm5C_associated_SNPs_33943 0 0 1 0 1 RSRC1 chr3:157841655 3'AG 157841655 Downstream 11bp
chrX 107911653 107911653 1 + C T SKCM 107911644 + 107911624 107911664 41 TTCACGGTTTCCCTGGTGTGCAGGGTCCCCCAGGCCCTCCT TTCACGGTTTCCCTGGTGTGCAGGGTCCCTCAGGCCCTCCT < 41bp 1 0.786978813133686 1 0.797834157943726 experiment 0.426042373732627 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107911644 chrX:107911653 nonsynonymous SNV 0.970 1 30 hm5C_associated_SNPs_33944 0 0 1 0 1 COL4A5 chrX:107911734 5'GT 107911734 Upstream 82bp
chr7 100777068 100777068 1 + G A SKCM 100777083 + 100777063 100777103 41 CTTATGAAAAAGAGGTGCCTCTCTCTGCCCTCACCAACATT CTTATAAAAAAGAGGTGCCTCTCTCTGCCCTCACCAACATT < 41bp 1 0.125103640555664 1 0.170665889978409 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100777083 chr7:100777068 nonsynonymous SNV 0.895 2 6 hm5C_associated_SNPs_33946 0 0 1 0 1 SERPINE1 chr7:100776976 3'AG 100776976 Downstream 93bp
chr7 100777068 100777068 1 + G A SKCM 100777087 + 100777067 100777107 41 TGAAAAAGAGGTGCCTCTCTCTGCCCTCACCAACATTCTGA TAAAAAAGAGGTGCCTCTCTCTGCCCTCACCAACATTCTGA < 41bp 1 0.469130279067054 1 0.566033244132996 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100777087 chr7:100777068 nonsynonymous SNV 0.895 2 2 hm5C_associated_SNPs_33947 0 0 1 0 1 SERPINE1 chr7:100776976 3'AG 100776976 Downstream 93bp
chr4 113189382 113189382 1 + G A SKCM 113189402 + 113189382 113189422 41 GAAGACTGGAAGTAATCCTACATCAGCCTCTGATGATTCCA AAAGACTGGAAGTAATCCTACATCAGCCTCTGATGATTCCA < 41bp 1 0.356951139656783 1 0.0677743256092072 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP1AR ENSG00000138660 CDS Human protein_coding chr4:113189402 chr4:113189382 synonymous SNV . 0 1 hm5C_associated_SNPs_33948 0 0 1 0 1 AP1AR chr4:113189300 3'AG 113189300 Downstream 83bp
chr7 128845608 128845608 1 + G A SKCM 128845621 + 128845601 128845641 41 ACCATGAGGCTTGGGGAGCCCACGTAGGTGTCTTGGGGACC ACCATGAAGCTTGGGGAGCCCACGTAGGTGTCTTGGGGACC < 41bp 1 0.60288699967925 1 0.559057116508484 experiment 0.794226000641499 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SMO ENSG00000128602 CDS Human protein_coding chr7:128845621 chr7:128845608 nonsynonymous SNV 0.995 4 8 hm5C_associated_SNPs_33949 0 0 1 0 1 SMO chr7:128845623 5'GT 128845623 Upstream 16bp
chr5 179143235 179143235 1 + C T SKCM 179143220 + 179143200 179143240 41 TTCACGTGAAATTGAGGACCCAGAAGACCGGAAGCCCGAGG TTCACGTGAAATTGAGGACCCAGAAGACCGGAAGCTCGAGG < 41bp 1 0.747935730839343 1 0.693824589252472 experiment 0.504128538321315 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179143220 chr5:179143235 nonsynonymous SNV 0.992 4 36 hm5C_associated_SNPs_33950 0 0 1 0 1 CANX chr5:179143295 5'GT 179143295 Upstream 61bp
chr1 116206830 116206830 1 + G A SKCM 116206847 + 116206827 116206867 41 CACGCTGCAGGTGGTCCGCTCCACCGATGGCGAGTCCCGCT CACACTGCAGGTGGTCCGCTCCACCGATGGCGAGTCCCGCT < 41bp 1 0.188043904335444 1 0.0487476289272308 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VANGL1 ENSG00000173218 CDS Human protein_coding chr1:116206847 chr1:116206830 synonymous SNV . 0 4 hm5C_associated_SNPs_33951 0 0 1 0 1 VANGL1 chr1:116206889 5'GT 116206889 Upstream 60bp
chr7 2686498 2686498 1 + C T SKCM 2686507 + 2686487 2686527 41 GCCCTGCTGCTCCTGGGGGCCGCCGCCCTGGCCTGCCTCGC GCCCTGCTGCTTCTGGGGGCCGCCGCCCTGGCCTGCCTCGC < 41bp 1 0.509663825739108 1 0.742795765399933 experiment 0.980672348521784 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686507 chr7:2686498 synonymous SNV . 0 12 hm5C_associated_SNPs_33955 0 0 1 0 1 TTYH3 chr7:2686487 3'AG 2686487 Downstream 12bp
chr20 10023936 10023936 1 + G A SKCM 10023948 + 10023928 10023968 41 ACATTTTTGGAAAAAGGAGCCAATCCTAATGCAATCAACTC ACATTTTTAGAAAAAGGAGCCAATCCTAATGCAATCAACTC < 41bp 1 0.0498960353505179 1 0.144399076700211 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKEF1 ENSG00000132623 CDS Human protein_coding chr20:10023948 chr20:10023936 synonymous SNV . 0 9 hm5C_associated_SNPs_33960 0 0 1 0 1 ANKEF1 chr20:10023969 5'GT 10023969 Upstream 34bp
chr22 24560519 24560519 1 + C T SKCM 24560499 + 24560479 24560519 41 AGCACCCTGCTGAAGGTGTCCTCCATGCTTCAGCGGACCCC AGCACCCTGCTGAAGGTGTCCTCCATGCTTCAGCGGACCCT < 41bp 1 0.727018232049539 1 0.926698923110962 experiment 0.545963535900922 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24560499 chr22:24560519 nonsynonymous SNV 0.998 4 41 hm5C_associated_SNPs_33961 0 0 1 0 1 CABIN1 chr22:24560531 5'GT 24560531 Upstream 13bp
chr11 33667294 33667294 1 + C T SKCM 33667280 + 33667260 33667300 41 ACATTGACAGAGTTCCTGAGCCCCGGGGCTATTCCAGGTCT ACATTGACAGAGTTCCTGAGCCCCGGGGCTATTCTAGGTCT < 41bp 1 0.260796210723881 1 0.142166167497635 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33667280 chr11:33667294 synonymous SNV . 0 35 hm5C_associated_SNPs_33962 0 0 0 0 1 KIAA1549L chr11:33667232 3'AG 33667232 Downstream 63bp
chr13 49765166 49765166 1 + C T SKCM 49765179 + 49765159 49765199 41 ATCTTTACTTGTGCAGACTCCAGCTGTGCCTCCTGGCCCAT ATCTTTATTTGTGCAGACTCCAGCTGTGCCTCCTGGCCCAT < 41bp 1 0.685406699615695 1 0.355266720056534 experiment 0.629186600768611 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49765179 chr13:49765166 nonsynonymous SNV 0.998 1 8 hm5C_associated_SNPs_33963 0 0 1 0 2 FNDC3A chr13:49765151 3'AG 49765151 Downstream 16bp
chr13 49765166 49765166 1 + C T SKCM 49765179 + 49765159 49765199 41 ATCTTTACTTGTGCAGACTCCAGCTGTGCCTCCTGGCCCAT ATCTTTATTTGTGCAGACTCCAGCTGTGCCTCCTGGCCCAT < 41bp 1 0.685406699615695 1 0.355266720056534 experiment 0.629186600768611 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49765179 chr13:49765166 nonsynonymous SNV 0.998 1 8 hm5C_associated_SNPs_33963 0 0 1 0 2 FNDC3A chr13:49765256 5'GT 49765256 Upstream 91bp
chr2 173429367 173429367 1 + C T SKCM 173429352 + 173429332 173429372 41 CTGTCACCAGCCAGAATGTTCAGTACTTTTTGGATCGATTC CTGTCACCAGCCAGAATGTTCAGTACTTTTTGGATTGATTC < 41bp 1 0.420369127300502 1 0.0498633682727814 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PDK1 ENSG00000152256 CDS Human protein_coding chr2:173429352 chr2:173429367 stopgain 1.000 1 36 hm5C_associated_SNPs_33965 0 0 0 0 1 PDK1 chr2:173429415 5'GT 173429415 Upstream 49bp
chr2 47205970 47205970 1 + C T SKCM 47205958 + 47205938 47205978 41 ATAACAGCACGTCGAGGCATCTGAAAGGCTGTCACCCGCTT ATAACAGCACGTCGAGGCATCTGAAAGGCTGTTACCCGCTT < 41bp 1 0.585549089421192 1 0.8039910197258 experiment 0.828901821157615 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47205958 chr2:47205970 nonsynonymous SNV 0.005 0 33 hm5C_associated_SNPs_33966 0 0 1 0 2 TTC7A chr2:47205931 3'AG 47205931 Downstream 40bp
chr2 47205970 47205970 1 + C T SKCM 47205958 + 47205938 47205978 41 ATAACAGCACGTCGAGGCATCTGAAAGGCTGTCACCCGCTT ATAACAGCACGTCGAGGCATCTGAAAGGCTGTTACCCGCTT < 41bp 1 0.585549089421192 1 0.8039910197258 experiment 0.828901821157615 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47205958 chr2:47205970 nonsynonymous SNV 0.005 0 33 hm5C_associated_SNPs_33966 0 0 1 0 2 TTC7A chr2:47206046 5'GT 47206046 Upstream 77bp
chr4 106861775 106861775 1 + G A SKCM 106861769 + 106861749 106861789 41 GCAAATGTAAAGAAGGATACCAGGGTGATGGACTGACTTGT GCAAATGTAAAGAAGGATACCAGGGTAATGGACTGACTTGT < 41bp 1 0.781899449175037 1 0.793399453163147 experiment 0.436201101649926 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPNT ENSG00000168743 CDS Human protein_coding chr4:106861769 chr4:106861775 nonsynonymous SNV 0.810 1 27 hm5C_associated_SNPs_33967 0 0 1 0 1 NPNT chr4:106861793 5'GT 106861793 Upstream 19bp
chr7 97833460 97833460 1 + C T SKCM 97833471 + 97833451 97833491 41 CCAGCTTTTCCCTCACACACCTGACCGACTCGGACATCGAG CCAGCTTTTTCCTCACACACCTGACCGACTCGGACATCGAG < 41bp 1 0.146134928194671 1 0.0609550476074219 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97833471 chr7:97833460 nonsynonymous SNV 0.898 5 10 hm5C_associated_SNPs_33968 0 0 1 0 1 LMTK2 chr7:97833498 5'GT 97833498 Upstream 39bp
chr3 124053173 124053173 1 + C T SKCM 124053164 + 124053144 124053184 41 GCTGCAGCGGCCCCTGAGCCCTGGGAACTCCGAATCCCTCA GCTGCAGCGGCCCCTGAGCCCTGGGAACTTCGAATCCCTCA < 41bp 1 0.615905426378449 1 0.749605298042297 experiment 0.768189147243101 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KALRN ENSG00000160145 CDS Human protein_coding chr3:124053164 chr3:124053173 nonsynonymous SNV 0.720 2 30 hm5C_associated_SNPs_33969 0 0 0 0 1 KALRN chr3:124053112 3'AG 124053112 Downstream 62bp
chr17 80529642 80529642 1 + C T SKCM 80529633 + 80529613 80529653 41 CGCCTTACTCCTACGCGCAGCTGATAGTTCAGGCGATTACG CGCCTTACTCCTACGCGCAGCTGATAGTTTAGGCGATTACG < 41bp 1 0.0698534956545277 1 0.0646834671497345 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80529633 chr17:80529642 stopgain 0.506 1 30 hm5C_associated_SNPs_33971 0 0 1 0 1 FOXK2 chr17:80529600 3'AG 80529600 Downstream 43bp
chr17 79408918 79408918 1 + C T SKCM 79408935 + 79408915 79408955 41 CTTCCCCAGCGTGGCCCGGGCCGCCCCTGCCCACCCCATGG CTTTCCCAGCGTGGCCCGGGCCGCCCCTGCCCACCCCATGG < 41bp 1 0.105596827057525 1 0.0940468907356262 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79408935 chr17:79408918 synonymous SNV . 0 4 hm5C_associated_SNPs_33973 0 0 1 0 1 BAHCC1 chr17:79408857 3'AG 79408857 Downstream 62bp
chr7 16823074 16823074 1 + G A SKCM 16823094 + 16823074 16823114 41 GAACCAGAAAGACCCCCGCGCGAATCCTAGTGCATTCCTTT AAACCAGAAAGACCCCCGCGCGAATCCTAGTGCATTCCTTT < 41bp 1 0.168654663799553 1 0.0892886519432068 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSPAN13 ENSG00000106537 CDS Human protein_coding chr7:16823094 chr7:16823074 synonymous SNV . 0 1 hm5C_associated_SNPs_33974 0 0 1 0 1 TSPAN13 chr7:16823042 3'AG 16823042 Downstream 33bp
chr2 47221609 47221609 1 + C T SKCM 47221605 + 47221585 47221625 41 CATGGGCAAGGAGGAGAGTTCTTTCGCCACTCAGGCCCTGC CATGGGCAAGGAGGAGAGTTCTTTTGCCACTCAGGCCCTGC < 41bp 1 0.108717843789682 1 0.029369592666626 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47221605 chr2:47221609 synonymous SNV . 0 25 hm5C_associated_SNPs_33976 0 0 1 0 1 TTC7A chr2:47221653 5'GT 47221653 Upstream 45bp
chr11 46747445 46747445 1 + C T SKCM 46747436 + 46747416 46747456 41 TCAAGTCACTGTAGCGATGACTCCACGCTCCGAAGGCTCCA TCAAGTCACTGTAGCGATGACTCCACGCTTCGAAGGCTCCA < 41bp 1 0.664527436758067 1 0.94365006685257 experiment 0.670945126483867 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control F2 ENSG00000180210 CDS Human protein_coding chr11:46747436 chr11:46747445 nonsynonymous SNV 0.084 2 30 hm5C_associated_SNPs_33982 0 0 1 0 1 F2 chr11:46747409 3'AG 46747409 Downstream 37bp
chr9 131830564 131830564 1 + C T SKCM 131830576 + 131830556 131830596 41 CCTCGGTGCTCGCCGTCCTGCGGAACCGCTGGCTGTCAGAC CCTCGGTGTTCGCCGTCCTGCGGAACCGCTGGCTGTCAGAC < 41bp 1 0.708469380777103 1 0.664179980754852 experiment 0.583061238445794 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830576 chr9:131830564 nonsynonymous SNV 0.927 2 9 hm5C_associated_SNPs_33984 0 0 1 0 2 MIGA2 chr9:131830477 3'AG 131830477 Downstream 88bp
chr9 131830564 131830564 1 + C T SKCM 131830576 + 131830556 131830596 41 CCTCGGTGCTCGCCGTCCTGCGGAACCGCTGGCTGTCAGAC CCTCGGTGTTCGCCGTCCTGCGGAACCGCTGGCTGTCAGAC < 41bp 1 0.708469380777103 1 0.664179980754852 experiment 0.583061238445794 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830576 chr9:131830564 nonsynonymous SNV 0.927 2 9 hm5C_associated_SNPs_33984 0 0 1 0 2 MIGA2 chr9:131830611 5'GT 131830611 Upstream 48bp
chr6 31598926 31598926 1 + C T SKCM 31598935 + 31598915 31598955 41 GGAGCGAGACTCCTCCAGTACCTCCCCCACCACCCTATCTG GGAGCGAGACTTCTCCAGTACCTCCCCCACCACCCTATCTG < 41bp 1 0.0968459152370032 1 0.0284353494644165 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31598935 chr6:31598926 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_33985 0 0 1 0 1 PRRC2A chr6:31598916 3'AG 31598916 Downstream 11bp
chr6 31598926 31598926 1 + C T SKCM 31598940 + 31598920 31598960 41 GAGACTCCTCCAGTACCTCCCCCACCACCCTATCTGGCCAG GAGACTTCTCCAGTACCTCCCCCACCACCCTATCTGGCCAG < 41bp 1 0.143811954540788 1 0.512734532356262 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31598940 chr6:31598926 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_33986 0 0 1 0 1 PRRC2A chr6:31598916 3'AG 31598916 Downstream 11bp
chr18 8819049 8819049 1 + G T SKCM 8819061 + 8819041 8819081 41 CCAGGGAAGCCTCCGCATGCCCCGTCCAGTGGCCATGTGGC CCAGGGAATCCTCCGCATGCCCCGTCCAGTGGCCATGTGGC < 41bp 1 0.147510618399139 1 0.0517077147960663 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8819061 chr18:8819049 nonsynonymous SNV 0.043 1 9 hm5C_associated_SNPs_33987 0 0 1 0 2 MTCL1 chr18:8818961 3'AG 8818961 Downstream 89bp
chr18 8819049 8819049 1 + G T SKCM 8819061 + 8819041 8819081 41 CCAGGGAAGCCTCCGCATGCCCCGTCCAGTGGCCATGTGGC CCAGGGAATCCTCCGCATGCCCCGTCCAGTGGCCATGTGGC < 41bp 1 0.147510618399139 1 0.0517077147960663 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8819061 chr18:8819049 nonsynonymous SNV 0.043 1 9 hm5C_associated_SNPs_33987 0 0 1 0 2 MTCL1 chr18:8819045 3'AG 8819045 Downstream 5bp
chrX 47774358 47774358 1 + A G SKCM 47774348 + 47774328 47774368 41 AAATTTGGAATTAAGCCTTCCCAGAGGAGAATTTCTGGGAA AAATTTGGAATTAAGCCTTCCCAGAGGAGAGTTTCTGGGAA < 41bp 1 0.213684752018544 1 0.535748302936554 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF81 ENSG00000197779 CDS Human protein_coding chrX:47774348 chrX:47774358 nonsynonymous SNV 0.759 0 31 hm5C_associated_SNPs_33989 0 0 0 0 1 ZNF81 chrX:47774323 3'AG 47774323 Downstream 36bp
chr4 87691040 87691040 1 + C T SKCM 87691057 + 87691037 87691077 41 GCTCTTTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTG GCTTTTTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTG < 41bp 1 0.350499999337938 1 0.6451016664505 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPN13 ENSG00000163629 CDS Human protein_coding chr4:87691057 chr4:87691040 synonymous SNV . 0 4 hm5C_associated_SNPs_33990 0 0 0 0 1 PTPN13 chr4:87691136 5'GT 87691136 Upstream 97bp
chr4 87691040 87691040 1 + C T SKCM 87691060 + 87691040 87691080 41 CTTTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTGATG TTTTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTGATG < 41bp 1 0.261427497142045 1 0.472986966371536 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN13 ENSG00000163629 CDS Human protein_coding chr4:87691060 chr4:87691040 synonymous SNV . 0 1 hm5C_associated_SNPs_33991 0 0 0 0 1 PTPN13 chr4:87691136 5'GT 87691136 Upstream 97bp
chr1 156106056 156106056 1 + C T SKCM 156106055 + 156106035 156106075 41 GCGCAGCCGTGGCCGTGCTTCCTCTCACTCATCCCAGACAC GCGCAGCCGTGGCCGTGCTTCTTCTCACTCATCCCAGACAC < 41bp 1 0.437008659685853 1 0.200363159179688 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156106055 chr1:156106056 synonymous SNV . 0 22 hm5C_associated_SNPs_33992 1 0 1 0 1 LMNA chr1:156106005 3'AG 156106005 Downstream 52bp
chr1 116206850 116206850 1 + C T SKCM 116206847 + 116206827 116206867 41 CACGCTGCAGGTGGTCCGCTCCACCGATGGCGAGTCCCGCT CACGCTGCAGGTGGTCCGCTCCATCGATGGCGAGTCCCGCT < 41bp 1 0.0930637134372516 1 0.265740990638733 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VANGL1 ENSG00000173218 CDS Human protein_coding chr1:116206847 chr1:116206850 nonsynonymous SNV 0.957 5 24 hm5C_associated_SNPs_33993 0 0 0 0 1 VANGL1 chr1:116206889 5'GT 116206889 Upstream 40bp
chr19 1496322 1496322 1 + G A SKCM 1496319 + 1496299 1496339 41 TTCTGCATGGCTCCCAGGCCCTGGAACGGGGCTCTCATGCT TTCTGCATGGCTCCCAGGCCCTGAAACGGGGCTCTCATGCT < 41bp 1 0.721866328389249 1 0.294686496257782 experiment 0.556267343221503 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control REEP6 ENSG00000115255 CDS Human protein_coding chr19:1496319 chr19:1496322 stopgain 0.047 0 24 hm5C_associated_SNPs_33994 0 0 1 0 1 REEP6 chr19:1496284 3'AG 1496284 Downstream 39bp
chr14 103805664 103805664 1 + C T SKCM 103805668 + 103805648 103805688 41 AATACAGGCGCCATTTCCTACGAGTAAGCAAAGTGCTCTGG AATACAGGCGCCATTTTCTACGAGTAAGCAAAGTGCTCTGG < 41bp 1 0.532707989581787 1 0.249754041433334 experiment 0.934584020836427 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103805668 chr14:103805664 synonymous SNV . 0 17 hm5C_associated_SNPs_33995 0 0 1 0 1 EIF5 chr14:103805670 5'GT 103805670 Upstream 7bp
chr12 57600321 57600321 1 + C T SKCM 57600323 + 57600303 57600343 41 AGCCTGTTCCCCGGCCACCCCCATTCGGCTTACGAGCAGGC AGCCTGTTCCCCGGCCACTCCCATTCGGCTTACGAGCAGGC < 41bp 1 0.0154980555059983 1 0.0990800559520721 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57600323 chr12:57600321 nonsynonymous SNV 0.936 2 19 hm5C_associated_SNPs_33996 0 0 0 0 1 LRP1 chr12:57600256 3'AG 57600256 Downstream 66bp
chr3 185337194 185337194 1 + T C SKCM 185337187 + 185337167 185337207 41 CTTCTATCCTAAATTAAAGTCTGGGGGTTACCAAGCAGTGA CTTCTATCCTAAATTAAAGTCTGGGGGCTACCAAGCAGTGA < 41bp 1 0.794426305256819 1 0.612234950065613 experiment 0.411147389486363 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SENP2 ENSG00000163904 CDS Human protein_coding chr3:185337187 chr3:185337194 synonymous SNV . 0 28 hm5C_associated_SNPs_33999 0 0 0 0 1 SENP2 chr3:185337290 5'GT 185337290 Upstream 97bp
chr14 68191281 68191281 1 + G A SKCM 68191265 + 68191245 68191285 41 GTGGTGATCACTGGCGCCAACACGGGCATTGGCAAGGAGAC GTGGTGATCACTGGCGCCAACACGGGCATTGGCAAGAAGAC < 41bp 1 0.786306294666929 1 0.547266066074371 experiment 0.427387410666141 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RDH12 ENSG00000139988 CDS Human protein_coding chr14:68191265 chr14:68191281 nonsynonymous SNV 1.000 5 37 hm5C_associated_SNPs_34000 0 0 0 0 2 RDH12 chr14:68191190 3'AG 68191190 Downstream 92bp
chr14 68191281 68191281 1 + G A SKCM 68191265 + 68191245 68191285 41 GTGGTGATCACTGGCGCCAACACGGGCATTGGCAAGGAGAC GTGGTGATCACTGGCGCCAACACGGGCATTGGCAAGAAGAC < 41bp 1 0.786306294666929 1 0.547266066074371 experiment 0.427387410666141 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RDH12 ENSG00000139988 CDS Human protein_coding chr14:68191265 chr14:68191281 nonsynonymous SNV 1.000 5 37 hm5C_associated_SNPs_34000 0 0 0 0 2 RDH12 chr14:68191308 5'GT 68191308 Upstream 28bp
chr5 167920929 167920929 1 + C T SKCM 167920910 + 167920890 167920930 41 GTGTTGTAGATGCTCAAAACCAAGGAACAGAAAGTTAATCC GTGTTGTAGATGCTCAAAACCAAGGAACAGAAAGTTAATTC < 41bp 1 0.695456744277732 1 0.439833641052246 experiment 0.609086511444535 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RARS ENSG00000113643 CDS Human protein_coding chr5:167920910 chr5:167920929 nonsynonymous SNV 0.998 5 40 hm5C_associated_SNPs_34001 0 0 1 0 2 RARS chr5:167920899 3'AG 167920899 Downstream 31bp
chr5 167920929 167920929 1 + C T SKCM 167920910 + 167920890 167920930 41 GTGTTGTAGATGCTCAAAACCAAGGAACAGAAAGTTAATCC GTGTTGTAGATGCTCAAAACCAAGGAACAGAAAGTTAATTC < 41bp 1 0.695456744277732 1 0.439833641052246 experiment 0.609086511444535 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RARS ENSG00000113643 CDS Human protein_coding chr5:167920910 chr5:167920929 nonsynonymous SNV 0.998 5 40 hm5C_associated_SNPs_34001 0 0 1 0 2 RARS chr5:167921007 5'GT 167921007 Upstream 79bp
chr1 158063217 158063217 1 + C T SKCM 158063221 + 158063201 158063241 41 CCTTGGTATTCTTCCTCTACCGGCGCCGCAAAGGCAGTGAG CCTTGGTATTCTTCCTTTACCGGCGCCGCAAAGGCAGTGAG < 41bp 1 0.703647511993269 1 0.489560037851334 experiment 0.592704976013463 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063221 chr1:158063217 synonymous SNV . 0 17 hm5C_associated_SNPs_34002 0 0 1 0 2 KIRREL chr1:158063129 3'AG 158063129 Downstream 89bp
chr1 158063217 158063217 1 + C T SKCM 158063221 + 158063201 158063241 41 CCTTGGTATTCTTCCTCTACCGGCGCCGCAAAGGCAGTGAG CCTTGGTATTCTTCCTTTACCGGCGCCGCAAAGGCAGTGAG < 41bp 1 0.703647511993269 1 0.489560037851334 experiment 0.592704976013463 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063221 chr1:158063217 synonymous SNV . 0 17 hm5C_associated_SNPs_34002 0 0 1 0 2 KIRREL chr1:158063236 5'GT 158063236 Upstream 20bp
chr11 46747446 46747446 1 + C T SKCM 46747436 + 46747416 46747456 41 TCAAGTCACTGTAGCGATGACTCCACGCTCCGAAGGCTCCA TCAAGTCACTGTAGCGATGACTCCACGCTCTGAAGGCTCCA < 41bp 1 0.645323345234181 1 0.964965760707855 experiment 0.709353309531638 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control F2 ENSG00000180210 CDS Human protein_coding chr11:46747436 chr11:46747446 synonymous SNV . 0 31 hm5C_associated_SNPs_34003 0 0 1 0 1 F2 chr11:46747409 3'AG 46747409 Downstream 38bp
chr16 675979 675979 1 + C T SKCM 675974 + 675954 675994 41 AGCGGCAGGTCCCGACGGAGCAGGCCCGCGCGTACGCAGAG AGCGGCAGGTCCCGACGGAGCAGGCTCGCGCGTACGCAGAG < 41bp 1 0.63446892631518 1 0.775298714637756 experiment 0.731062147369641 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675974 chr16:675979 synonymous SNV . 0 26 hm5C_associated_SNPs_34004 0 0 0 0 2 RAB40C chr16:675899 3'AG 675899 Downstream 81bp
chr16 675979 675979 1 + C T SKCM 675974 + 675954 675994 41 AGCGGCAGGTCCCGACGGAGCAGGCCCGCGCGTACGCAGAG AGCGGCAGGTCCCGACGGAGCAGGCTCGCGCGTACGCAGAG < 41bp 1 0.63446892631518 1 0.775298714637756 experiment 0.731062147369641 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675974 chr16:675979 synonymous SNV . 0 26 hm5C_associated_SNPs_34004 0 0 0 0 2 RAB40C chr16:675956 3'AG 675956 Downstream 24bp
chr6 36106517 36106517 1 + G A SKCM 36106530 + 36106510 36106550 41 CCCCCAGGAAGGATTTCACTCAGCTGTTCCCACGGGCCAGC CCCCCAGAAAGGATTTCACTCAGCTGTTCCCACGGGCCAGC < 41bp 1 0.792562035227941 1 0.616380155086517 experiment 0.414875929544119 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MAPK13 ENSG00000156711 CDS Human protein_coding chr6:36106530 chr6:36106517 nonsynonymous SNV 0.999 1 8 hm5C_associated_SNPs_34005 0 0 1 0 1 MAPK13 chr6:36106479 3'AG 36106479 Downstream 39bp
chr4 141300281 141300281 1 + C T SKCM 141300277 + 141300257 141300297 41 GAATTTTTCTTATTGTAGACCATTCCTCAAGAATTTTGTAT GAATTTTTCTTATTGTAGACCATTTCTCAAGAATTTTGTAT < 41bp 1 0.033947382679409 1 0.0279330909252167 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCOC ENSG00000153130 CDS Human protein_coding chr4:141300277 chr4:141300281 nonsynonymous SNV 0.542 1 25 hm5C_associated_SNPs_34007 0 0 1 0 2 SCOC chr4:141300275 3'AG 141300275 Downstream 7bp
chr4 141300281 141300281 1 + C T SKCM 141300277 + 141300257 141300297 41 GAATTTTTCTTATTGTAGACCATTCCTCAAGAATTTTGTAT GAATTTTTCTTATTGTAGACCATTTCTCAAGAATTTTGTAT < 41bp 1 0.033947382679409 1 0.0279330909252167 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCOC ENSG00000153130 CDS Human protein_coding chr4:141300277 chr4:141300281 nonsynonymous SNV 0.542 1 25 hm5C_associated_SNPs_34007 0 0 1 0 2 SCOC chr4:141300346 5'GT 141300346 Upstream 66bp
chr16 70163018 70163018 1 + C T SKCM 70163015 + 70162995 70163035 41 CTTGCCCTGGCAAGTGCTGCCTCCCAAAATGGTGAGCAGGT CTTGCCCTGGCAAGTGCTGCCTCTCAAAATGGTGAGCAGGT < 41bp 1 0.079693191155266 1 0.229767262935638 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70163015 chr16:70163018 synonymous SNV . 0 24 hm5C_associated_SNPs_34008 0 0 0 0 1 PDPR chr16:70163025 5'GT 70163025 Upstream 8bp
chr7 76109997 76109997 1 + G A SKCM 76110000 + 76109980 76110020 41 CAACGTTTTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTT CAACGTTTTGGGCTTGGAAGCCTGGCCCACAGCATCCCCTT < 41bp 1 0.252546225209225 1 0.139661610126495 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110000 chr7:76109997 synonymous SNV . 0 18 hm5C_associated_SNPs_34009 0 0 0 0 1 DTX2 chr7:76110094 5'GT 76110094 Upstream 98bp
chr7 76109997 76109997 1 + G A SKCM 76110001 + 76109981 76110021 41 AACGTTTTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTTG AACGTTTTGGGCTTGGAAGCCTGGCCCACAGCATCCCCTTG < 41bp 1 0.513985118165084 1 0.608468294143677 experiment 0.972029763669833 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110001 chr7:76109997 synonymous SNV . 0 17 hm5C_associated_SNPs_34010 0 0 0 0 1 DTX2 chr7:76110094 5'GT 76110094 Upstream 98bp
chr7 76109997 76109997 1 + G A SKCM 76110005 + 76109985 76110025 41 TTTTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTTGGGCC TTTTGGGCTTGGAAGCCTGGCCCACAGCATCCCCTTGGGCC < 41bp 1 0.0795483210386742 1 0.0562908351421356 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110005 chr7:76109997 synonymous SNV . 0 13 hm5C_associated_SNPs_34011 0 0 0 0 1 DTX2 chr7:76110094 5'GT 76110094 Upstream 98bp
chr7 76109997 76109997 1 + G A SKCM 76110006 + 76109986 76110026 41 TTTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTTGGGCCA TTTGGGCTTGGAAGCCTGGCCCACAGCATCCCCTTGGGCCA < 41bp 1 0.420252751195399 1 0.138836085796356 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110006 chr7:76109997 synonymous SNV . 0 12 hm5C_associated_SNPs_34012 0 0 0 0 1 DTX2 chr7:76110094 5'GT 76110094 Upstream 98bp
chr7 76109997 76109997 1 + G A SKCM 76110007 + 76109987 76110027 41 TTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTTGGGCCAG TTGGGCTTGGAAGCCTGGCCCACAGCATCCCCTTGGGCCAG < 41bp 1 0.473928313243317 1 0.14803484082222 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110007 chr7:76109997 synonymous SNV . 0 11 hm5C_associated_SNPs_34013 0 0 0 0 1 DTX2 chr7:76110094 5'GT 76110094 Upstream 98bp
chr3 47891189 47891189 1 + C T SKCM 47891200 + 47891180 47891220 41 CAGCGTCTTCGTCCGGGACTCCTCTCAGGTGCACCCGCTAG CAGCGTCTTTGTCCGGGACTCCTCTCAGGTGCACCCGCTAG < 41bp 1 0.104400967445977 1 0.0793721079826355 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DHX30 ENSG00000132153 CDS Human protein_coding chr3:47891200 chr3:47891189 synonymous SNV . 0 10 hm5C_associated_SNPs_34014 0 0 1 0 1 DHX30 chr3:47891259 5'GT 47891259 Upstream 71bp
chr19 10794135 10794135 1 + C T SKCM 10794136 + 10794116 10794156 41 TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG TGCCCTAGAAAAGCTTTTCTCTGACACCCCTCTCGCCCTTG < 41bp 1 0.499048043502905 1 0.131685078144073 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794136 chr19:10794135 nonsynonymous SNV 0.308 1 20 hm5C_associated_SNPs_34015 0 0 1 0 2 ILF3 chr19:10794042 3'AG 10794042 Downstream 94bp
chr19 10794135 10794135 1 + C T SKCM 10794136 + 10794116 10794156 41 TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG TGCCCTAGAAAAGCTTTTCTCTGACACCCCTCTCGCCCTTG < 41bp 1 0.499048043502905 1 0.131685078144073 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794136 chr19:10794135 nonsynonymous SNV 0.308 1 20 hm5C_associated_SNPs_34015 0 0 1 0 2 ILF3 chr19:10794218 5'GT 10794218 Upstream 84bp
chr19 10794135 10794135 1 + C T SKCM 10794142 + 10794122 10794162 41 AGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTGATGCCA AGAAAAGCTTTTCTCTGACACCCCTCTCGCCCTTGATGCCA < 41bp 1 0.190774464892581 1 0.0346224009990692 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794142 chr19:10794135 nonsynonymous SNV 0.308 1 14 hm5C_associated_SNPs_34016 0 0 1 0 2 ILF3 chr19:10794042 3'AG 10794042 Downstream 94bp
chr19 10794135 10794135 1 + C T SKCM 10794142 + 10794122 10794162 41 AGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTGATGCCA AGAAAAGCTTTTCTCTGACACCCCTCTCGCCCTTGATGCCA < 41bp 1 0.190774464892581 1 0.0346224009990692 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794142 chr19:10794135 nonsynonymous SNV 0.308 1 14 hm5C_associated_SNPs_34016 0 0 1 0 2 ILF3 chr19:10794218 5'GT 10794218 Upstream 84bp
chr12 53495882 53495882 1 + G A SKCM 53495902 + 53495882 53495922 41 GGGCAAGTCCCTGCCAGGGTCTCCAGATGGCAATGGAAGCT AGGCAAGTCCCTGCCAGGGTCTCCAGATGGCAATGGAAGCT < 41bp 1 0.756408204749639 1 0.903607785701752 experiment 0.487183590500722 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IGFBP6 ENSG00000167779 CDS Human protein_coding chr12:53495902 chr12:53495882 nonsynonymous SNV 0.998 4 1 hm5C_associated_SNPs_34017 0 0 0 0 1 IGFBP6 chr12:53495829 3'AG 53495829 Downstream 54bp
chr19 41078018 41078018 1 + G A SKCM 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGAG < 41bp 1 0.408922106088261 1 0.879898190498352 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41078018 synonymous SNV . 0 40 hm5C_associated_SNPs_34020 0 0 0 0 2 SPTBN4 chr19:41077925 3'AG 41077925 Downstream 94bp
chr19 41078018 41078018 1 + G A SKCM 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGAG < 41bp 1 0.408922106088261 1 0.879898190498352 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41078018 synonymous SNV . 0 40 hm5C_associated_SNPs_34020 0 0 0 0 2 SPTBN4 chr19:41078098 5'GT 41078098 Upstream 81bp
chr9 21859395 21859395 1 + G A SKCM 21859391 + 21859371 21859411 41 ACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCT ACCATACCTCAGATAGGGTCCACAAAATGGTCAGAAACCCT < 41bp 1 0.391359415311062 1 0.405710607767105 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTAP ENSG00000099810 CDS Human protein_coding chr9:21859391 chr9:21859395 nonsynonymous SNV 0.991 1 25 hm5C_associated_SNPs_34021 0 0 1 0 2 MTAP chr9:21859302 3'AG 21859302 Downstream 94bp
chr9 21859395 21859395 1 + G A SKCM 21859391 + 21859371 21859411 41 ACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCT ACCATACCTCAGATAGGGTCCACAAAATGGTCAGAAACCCT < 41bp 1 0.391359415311062 1 0.405710607767105 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTAP ENSG00000099810 CDS Human protein_coding chr9:21859391 chr9:21859395 nonsynonymous SNV 0.991 1 25 hm5C_associated_SNPs_34021 0 0 1 0 2 MTAP chr9:21859424 5'GT 21859424 Upstream 30bp
chr9 21859395 21859395 1 + G A SKCM 21859402 + 21859382 21859422 41 GATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGA GATAGGGTCCACAAAATGGTCAGAAACCCTCCATAACCTGA < 41bp 1 0.637145981377848 1 0.447366714477539 experiment 0.725708037244303 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTAP ENSG00000099810 CDS Human protein_coding chr9:21859402 chr9:21859395 nonsynonymous SNV 0.991 1 14 hm5C_associated_SNPs_34022 0 0 1 0 2 MTAP chr9:21859302 3'AG 21859302 Downstream 94bp
chr9 21859395 21859395 1 + G A SKCM 21859402 + 21859382 21859422 41 GATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGA GATAGGGTCCACAAAATGGTCAGAAACCCTCCATAACCTGA < 41bp 1 0.637145981377848 1 0.447366714477539 experiment 0.725708037244303 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTAP ENSG00000099810 CDS Human protein_coding chr9:21859402 chr9:21859395 nonsynonymous SNV 0.991 1 14 hm5C_associated_SNPs_34022 0 0 1 0 2 MTAP chr9:21859424 5'GT 21859424 Upstream 30bp
chr5 147498037 147498037 1 + G A SKCM 147498044 + 147498024 147498064 41 CAAATGAAAAATGGAAGACTCAGCTGTACTCGGGAGAGTGA CAAATGAAAAATGAAAGACTCAGCTGTACTCGGGAGAGTGA < 41bp 1 0.357169935659045 1 0.314152151346207 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147498044 chr5:147498037 nonsynonymous SNV 0.974 3 14 hm5C_associated_SNPs_34023 0 0 0 0 2 SPINK5 chr5:147498000 3'AG 147498000 Downstream 38bp
chr5 147498037 147498037 1 + G A SKCM 147498044 + 147498024 147498064 41 CAAATGAAAAATGGAAGACTCAGCTGTACTCGGGAGAGTGA CAAATGAAAAATGAAAGACTCAGCTGTACTCGGGAGAGTGA < 41bp 1 0.357169935659045 1 0.314152151346207 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147498044 chr5:147498037 nonsynonymous SNV 0.974 3 14 hm5C_associated_SNPs_34023 0 0 0 0 2 SPINK5 chr5:147498127 5'GT 147498127 Upstream 91bp
chr22 35719864 35719864 1 + C T SKCM 35719884 + 35719864 35719904 41 CCATACTCTCCGGTGACACGCCCATAGCACCAACCCCGGAA TCATACTCTCCGGTGACACGCCCATAGCACCAACCCCGGAA < 41bp 1 0.179767225661516 1 0.0950077772140503 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOM1 ENSG00000100284 CDS Human protein_coding chr22:35719884 chr22:35719864 nonsynonymous SNV 0.001 1 1 hm5C_associated_SNPs_34024 0 0 1 0 1 TOM1 chr22:35719907 5'GT 35719907 Upstream 44bp
chr10 5147814 5147814 1 + G A SKCM 5147798 + 5147778 5147818 41 TTCTGATAGGTTTTTGAGTTCCAGTTGACTGCAGAGGACAT TTCTGATAGGTTTTTGAGTTCCAGTTGACTGCAGAGAACAT < 41bp 1 0.158565668674859 1 0.111565560102463 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1C3 ENSG00000196139 CDS Human protein_coding chr10:5147798 chr10:5147814 nonsynonymous SNV 0.868 4 37 hm5C_associated_SNPs_34025 0 0 1 0 2 AKR1C3 chr10:5147787 3'AG 5147787 Downstream 28bp
chr10 5147814 5147814 1 + G A SKCM 5147798 + 5147778 5147818 41 TTCTGATAGGTTTTTGAGTTCCAGTTGACTGCAGAGGACAT TTCTGATAGGTTTTTGAGTTCCAGTTGACTGCAGAGAACAT < 41bp 1 0.158565668674859 1 0.111565560102463 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1C3 ENSG00000196139 CDS Human protein_coding chr10:5147798 chr10:5147814 nonsynonymous SNV 0.868 4 37 hm5C_associated_SNPs_34025 0 0 1 0 2 AKR1C3 chr10:5147869 5'GT 5147869 Upstream 56bp
chr7 4002352 4002352 1 + C T SKCM 4002345 + 4002325 4002365 41 CCATCTCCATCAGCAGGCTCCAGAATCCTCGATACAAAGTG CCATCTCCATCAGCAGGCTCCAGAATCTTCGATACAAAGTG < 41bp 1 0.193049028747918 1 0.485606074333191 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDK1 ENSG00000146555 CDS Human protein_coding chr7:4002345 chr7:4002352 nonsynonymous SNV 0.629 1 28 hm5C_associated_SNPs_34026 0 0 1 0 1 SDK1 chr7:4002289 3'AG 4002289 Downstream 64bp
chr1 156876660 156876660 1 + G A SKCM 156876640 + 156876620 156876660 41 TGCGATCCCCAGACTGGAGCCTGCTTCTGCCCCGCAGAGAG TGCGATCCCCAGACTGGAGCCTGCTTCTGCCCCGCAGAGAA < 41bp 1 0.329607745037325 1 0.169449716806412 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156876640 chr1:156876660 nonsynonymous SNV 0.987 0 41 hm5C_associated_SNPs_34027 0 0 0 0 1 PEAR1 chr1:156876672 5'GT 156876672 Upstream 13bp
chr9 137666739 137666739 1 + C T SKCM 137666719 + 137666699 137666739 41 TTTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACCC TTTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACCT < 41bp 1 0.288363588983042 1 0.403935194015503 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137666719 chr9:137666739 nonsynonymous SNV 0.986 4 41 hm5C_associated_SNPs_34031 0 0 0 0 1 COL5A1 chr9:137666758 5'GT 137666758 Upstream 20bp
chr9 137666739 137666739 1 + C T SKCM 137666720 + 137666700 137666740 41 TTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACCCA TTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACCTA < 41bp 1 0.546982578885762 1 0.770448982715607 experiment 0.906034842228476 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137666720 chr9:137666739 nonsynonymous SNV 0.986 4 40 hm5C_associated_SNPs_34032 0 0 0 0 1 COL5A1 chr9:137666758 5'GT 137666758 Upstream 20bp
chr11 75279845 75279845 1 + C T SKCM 75279855 + 75279835 75279875 41 CGGTCCTATACCGTGGGTGTCATGATGATGCACCGGACAGG CGGTCCTATATCGTGGGTGTCATGATGATGCACCGGACAGG < 41bp 1 0.579348888533251 1 0.227681159973145 experiment 0.841302222933499 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279855 chr11:75279845 nonsynonymous SNV 0.960 5 11 hm5C_associated_SNPs_34033 0 0 1 0 2 SERPINH1 chr11:75279776 3'AG 75279776 Downstream 70bp
chr11 75279845 75279845 1 + C T SKCM 75279855 + 75279835 75279875 41 CGGTCCTATACCGTGGGTGTCATGATGATGCACCGGACAGG CGGTCCTATATCGTGGGTGTCATGATGATGCACCGGACAGG < 41bp 1 0.579348888533251 1 0.227681159973145 experiment 0.841302222933499 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279855 chr11:75279845 nonsynonymous SNV 0.960 5 11 hm5C_associated_SNPs_34033 0 0 1 0 2 SERPINH1 chr11:75279874 5'GT 75279874 Upstream 30bp
chr9 137666738 137666738 1 + C T SKCM 137666718 + 137666698 137666738 41 GTTTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACC GTTTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACT < 41bp 1 0.12804646549336 1 0.0490949153900146 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137666718 chr9:137666738 nonsynonymous SNV 0.978 4 41 hm5C_associated_SNPs_34034 0 0 0 0 1 COL5A1 chr9:137666758 5'GT 137666758 Upstream 21bp
chr9 137666738 137666738 1 + C T SKCM 137666719 + 137666699 137666739 41 TTTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACCC TTTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACTC < 41bp 1 0.336078121554234 1 0.472459018230438 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137666719 chr9:137666738 nonsynonymous SNV 0.978 4 40 hm5C_associated_SNPs_34035 0 0 0 0 1 COL5A1 chr9:137666758 5'GT 137666758 Upstream 21bp
chr9 137666738 137666738 1 + C T SKCM 137666720 + 137666700 137666740 41 TTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACCCA TTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACTCA < 41bp 1 0.494043437456634 1 0.717973053455353 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137666720 chr9:137666738 nonsynonymous SNV 0.978 4 39 hm5C_associated_SNPs_34036 0 0 0 0 1 COL5A1 chr9:137666758 5'GT 137666758 Upstream 21bp
chr10 5147813 5147813 1 + G C SKCM 5147798 + 5147778 5147818 41 TTCTGATAGGTTTTTGAGTTCCAGTTGACTGCAGAGGACAT TTCTGATAGGTTTTTGAGTTCCAGTTGACTGCAGACGACAT < 41bp 1 0.196784137824868 1 0.109783947467804 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1C3 ENSG00000196139 CDS Human protein_coding chr10:5147798 chr10:5147813 nonsynonymous SNV 0.683 0 36 hm5C_associated_SNPs_34037 0 0 1 0 2 AKR1C3 chr10:5147787 3'AG 5147787 Downstream 27bp
chr10 5147813 5147813 1 + G C SKCM 5147798 + 5147778 5147818 41 TTCTGATAGGTTTTTGAGTTCCAGTTGACTGCAGAGGACAT TTCTGATAGGTTTTTGAGTTCCAGTTGACTGCAGACGACAT < 41bp 1 0.196784137824868 1 0.109783947467804 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1C3 ENSG00000196139 CDS Human protein_coding chr10:5147798 chr10:5147813 nonsynonymous SNV 0.683 0 36 hm5C_associated_SNPs_34037 0 0 1 0 2 AKR1C3 chr10:5147869 5'GT 5147869 Upstream 57bp
chr4 20568969 20568969 1 + C T SKCM 20568982 + 20568962 20569002 41 AGTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGG AGTGATCTAGTTGACTTTTACCGATGCACCTGTCCATATGG < 41bp 1 0.130839043438747 1 0.525822341442108 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568982 chr4:20568969 nonsynonymous SNV 0.965 3 8 hm5C_associated_SNPs_34038 0 0 1 0 2 SLIT2 chr4:20568885 3'AG 20568885 Downstream 85bp
chr4 20568969 20568969 1 + C T SKCM 20568982 + 20568962 20569002 41 AGTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGG AGTGATCTAGTTGACTTTTACCGATGCACCTGTCCATATGG < 41bp 1 0.130839043438747 1 0.525822341442108 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568982 chr4:20568969 nonsynonymous SNV 0.965 3 8 hm5C_associated_SNPs_34038 0 0 1 0 2 SLIT2 chr4:20569009 5'GT 20569009 Upstream 41bp
chr4 20568969 20568969 1 + C T SKCM 20568983 + 20568963 20569003 41 GTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGGT GTGATCTAGTTGACTTTTACCGATGCACCTGTCCATATGGT < 41bp 1 0.134980955560538 1 0.736571907997131 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568983 chr4:20568969 nonsynonymous SNV 0.965 3 7 hm5C_associated_SNPs_34039 0 0 1 0 2 SLIT2 chr4:20568885 3'AG 20568885 Downstream 85bp
chr4 20568969 20568969 1 + C T SKCM 20568983 + 20568963 20569003 41 GTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGGT GTGATCTAGTTGACTTTTACCGATGCACCTGTCCATATGGT < 41bp 1 0.134980955560538 1 0.736571907997131 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568983 chr4:20568969 nonsynonymous SNV 0.965 3 7 hm5C_associated_SNPs_34039 0 0 1 0 2 SLIT2 chr4:20569009 5'GT 20569009 Upstream 41bp
chr3 184106424 184106424 1 + G A SKCM 184106407 + 184106387 184106427 41 CCCACCCCCAGCTGGGGGACCCCATGCAGGCTGATGGGCCC CCCACCCCCAGCTGGGGGACCCCATGCAGGCTGATGGACCC < 41bp 1 0.194303008609276 1 0.19364395737648 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHRD ENSG00000090539 CDS Human protein_coding chr3:184106407 chr3:184106424 synonymous SNV . 0 38 hm5C_associated_SNPs_34040 0 0 1 0 1 CHRD chr3:184106375 3'AG 184106375 Downstream 50bp
chr3 48506019 48506019 1 + C T SKCM 48506023 + 48506003 48506043 41 TTGGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAAC TTGGTGTGCAGAGCCCTTTGCCCCCAGTCACTGGCTCCAAC < 41bp 1 0.125795484128203 1 0.0327857732772827 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506023 chr3:48506019 synonymous SNV . 0 17 hm5C_associated_SNPs_34041 0 0 1 0 2 ATRIP chr3:48505981 3'AG 48505981 Downstream 39bp
chr3 48506019 48506019 1 + C T SKCM 48506023 + 48506003 48506043 41 TTGGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAAC TTGGTGTGCAGAGCCCTTTGCCCCCAGTCACTGGCTCCAAC < 41bp 1 0.125795484128203 1 0.0327857732772827 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506023 chr3:48506019 synonymous SNV . 0 17 hm5C_associated_SNPs_34041 0 0 1 0 2 ATRIP chr3:48506061 5'GT 48506061 Upstream 43bp
chr3 48506019 48506019 1 + C T SKCM 48506024 + 48506004 48506044 41 TGGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACT TGGTGTGCAGAGCCCTTTGCCCCCAGTCACTGGCTCCAACT < 41bp 1 0.439540933114171 1 0.496870934963226 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506024 chr3:48506019 synonymous SNV . 0 16 hm5C_associated_SNPs_34042 0 0 1 0 2 ATRIP chr3:48505981 3'AG 48505981 Downstream 39bp
chr3 48506019 48506019 1 + C T SKCM 48506024 + 48506004 48506044 41 TGGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACT TGGTGTGCAGAGCCCTTTGCCCCCAGTCACTGGCTCCAACT < 41bp 1 0.439540933114171 1 0.496870934963226 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506024 chr3:48506019 synonymous SNV . 0 16 hm5C_associated_SNPs_34042 0 0 1 0 2 ATRIP chr3:48506061 5'GT 48506061 Upstream 43bp
chr3 48506019 48506019 1 + C T SKCM 48506025 + 48506005 48506045 41 GGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTG GGTGTGCAGAGCCCTTTGCCCCCAGTCACTGGCTCCAACTG < 41bp 1 0.300737411004861 1 0.0565172135829926 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506025 chr3:48506019 synonymous SNV . 0 15 hm5C_associated_SNPs_34043 0 0 1 0 2 ATRIP chr3:48505981 3'AG 48505981 Downstream 39bp
chr3 48506019 48506019 1 + C T SKCM 48506025 + 48506005 48506045 41 GGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTG GGTGTGCAGAGCCCTTTGCCCCCAGTCACTGGCTCCAACTG < 41bp 1 0.300737411004861 1 0.0565172135829926 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506025 chr3:48506019 synonymous SNV . 0 15 hm5C_associated_SNPs_34043 0 0 1 0 2 ATRIP chr3:48506061 5'GT 48506061 Upstream 43bp
chr3 48506019 48506019 1 + C T SKCM 48506026 + 48506006 48506046 41 GTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGC GTGTGCAGAGCCCTTTGCCCCCAGTCACTGGCTCCAACTGC < 41bp 1 0.294563117695977 1 0.151283591985703 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506026 chr3:48506019 synonymous SNV . 0 14 hm5C_associated_SNPs_34044 0 0 1 0 2 ATRIP chr3:48505981 3'AG 48505981 Downstream 39bp
chr3 48506019 48506019 1 + C T SKCM 48506026 + 48506006 48506046 41 GTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGC GTGTGCAGAGCCCTTTGCCCCCAGTCACTGGCTCCAACTGC < 41bp 1 0.294563117695977 1 0.151283591985703 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506026 chr3:48506019 synonymous SNV . 0 14 hm5C_associated_SNPs_34044 0 0 1 0 2 ATRIP chr3:48506061 5'GT 48506061 Upstream 43bp
chr3 48506019 48506019 1 + C T SKCM 48506027 + 48506007 48506047 41 TGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGCC TGTGCAGAGCCCTTTGCCCCCAGTCACTGGCTCCAACTGCC < 41bp 1 0.251420804076514 1 0.160490572452545 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506027 chr3:48506019 synonymous SNV . 0 13 hm5C_associated_SNPs_34045 0 0 1 0 2 ATRIP chr3:48505981 3'AG 48505981 Downstream 39bp
chr3 48506019 48506019 1 + C T SKCM 48506027 + 48506007 48506047 41 TGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGCC TGTGCAGAGCCCTTTGCCCCCAGTCACTGGCTCCAACTGCC < 41bp 1 0.251420804076514 1 0.160490572452545 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506027 chr3:48506019 synonymous SNV . 0 13 hm5C_associated_SNPs_34045 0 0 1 0 2 ATRIP chr3:48506061 5'GT 48506061 Upstream 43bp
chr10 17271961 17271961 1 + G A SKCM 17271952 + 17271932 17271972 41 GTCGAGGTGGAGCGCGACAACCTGGCCGAGGACATCATGCG GTCGAGGTGGAGCGCGACAACCTGGCCGAAGACATCATGCG < 41bp 1 0.446413730420147 1 0.416986048221588 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17271952 chr10:17271961 synonymous SNV . 0 30 hm5C_associated_SNPs_34046 0 0 1 0 1 VIM chr10:17271984 5'GT 17271984 Upstream 24bp
chr2 47221585 47221585 1 + C T SKCM 47221605 + 47221585 47221625 41 CATGGGCAAGGAGGAGAGTTCTTTCGCCACTCAGGCCCTGC TATGGGCAAGGAGGAGAGTTCTTTCGCCACTCAGGCCCTGC < 41bp 1 0.0801956004245774 1 0.0227203965187073 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47221605 chr2:47221585 synonymous SNV . 0 1 hm5C_associated_SNPs_34048 0 0 1 0 2 TTC7A chr2:47221496 3'AG 47221496 Downstream 90bp
chr2 47221585 47221585 1 + C T SKCM 47221605 + 47221585 47221625 41 CATGGGCAAGGAGGAGAGTTCTTTCGCCACTCAGGCCCTGC TATGGGCAAGGAGGAGAGTTCTTTCGCCACTCAGGCCCTGC < 41bp 1 0.0801956004245774 1 0.0227203965187073 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47221605 chr2:47221585 synonymous SNV . 0 1 hm5C_associated_SNPs_34048 0 0 1 0 2 TTC7A chr2:47221653 5'GT 47221653 Upstream 69bp
chr3 48506018 48506018 1 + C T SKCM 48506023 + 48506003 48506043 41 TTGGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAAC TTGGTGTGCAGAGCCTCTTGCCCCCAGTCACTGGCTCCAAC < 41bp 1 0.109880533994169 1 0.0394130945205688 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506023 chr3:48506018 nonsynonymous SNV 0.658 1 16 hm5C_associated_SNPs_34049 0 0 1 0 2 ATRIP chr3:48505981 3'AG 48505981 Downstream 38bp
chr3 48506018 48506018 1 + C T SKCM 48506023 + 48506003 48506043 41 TTGGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAAC TTGGTGTGCAGAGCCTCTTGCCCCCAGTCACTGGCTCCAAC < 41bp 1 0.109880533994169 1 0.0394130945205688 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506023 chr3:48506018 nonsynonymous SNV 0.658 1 16 hm5C_associated_SNPs_34049 0 0 1 0 2 ATRIP chr3:48506061 5'GT 48506061 Upstream 44bp
chr3 48506018 48506018 1 + C T SKCM 48506024 + 48506004 48506044 41 TGGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACT TGGTGTGCAGAGCCTCTTGCCCCCAGTCACTGGCTCCAACT < 41bp 1 0.414677780624613 1 0.314454078674316 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506024 chr3:48506018 nonsynonymous SNV 0.658 1 15 hm5C_associated_SNPs_34050 0 0 1 0 2 ATRIP chr3:48505981 3'AG 48505981 Downstream 38bp
chr3 48506018 48506018 1 + C T SKCM 48506024 + 48506004 48506044 41 TGGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACT TGGTGTGCAGAGCCTCTTGCCCCCAGTCACTGGCTCCAACT < 41bp 1 0.414677780624613 1 0.314454078674316 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506024 chr3:48506018 nonsynonymous SNV 0.658 1 15 hm5C_associated_SNPs_34050 0 0 1 0 2 ATRIP chr3:48506061 5'GT 48506061 Upstream 44bp
chr3 48506018 48506018 1 + C T SKCM 48506025 + 48506005 48506045 41 GGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTG GGTGTGCAGAGCCTCTTGCCCCCAGTCACTGGCTCCAACTG < 41bp 1 0.296349018965909 1 0.051773726940155 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506025 chr3:48506018 nonsynonymous SNV 0.658 1 14 hm5C_associated_SNPs_34051 0 0 1 0 2 ATRIP chr3:48505981 3'AG 48505981 Downstream 38bp
chr3 48506018 48506018 1 + C T SKCM 48506025 + 48506005 48506045 41 GGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTG GGTGTGCAGAGCCTCTTGCCCCCAGTCACTGGCTCCAACTG < 41bp 1 0.296349018965909 1 0.051773726940155 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506025 chr3:48506018 nonsynonymous SNV 0.658 1 14 hm5C_associated_SNPs_34051 0 0 1 0 2 ATRIP chr3:48506061 5'GT 48506061 Upstream 44bp
chr3 48506018 48506018 1 + C T SKCM 48506026 + 48506006 48506046 41 GTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGC GTGTGCAGAGCCTCTTGCCCCCAGTCACTGGCTCCAACTGC < 41bp 1 0.2895136515047 1 0.130939483642578 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506026 chr3:48506018 nonsynonymous SNV 0.658 1 13 hm5C_associated_SNPs_34052 0 0 1 0 2 ATRIP chr3:48505981 3'AG 48505981 Downstream 38bp
chr3 48506018 48506018 1 + C T SKCM 48506026 + 48506006 48506046 41 GTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGC GTGTGCAGAGCCTCTTGCCCCCAGTCACTGGCTCCAACTGC < 41bp 1 0.2895136515047 1 0.130939483642578 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506026 chr3:48506018 nonsynonymous SNV 0.658 1 13 hm5C_associated_SNPs_34052 0 0 1 0 2 ATRIP chr3:48506061 5'GT 48506061 Upstream 44bp
chr3 48506018 48506018 1 + C T SKCM 48506027 + 48506007 48506047 41 TGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGCC TGTGCAGAGCCTCTTGCCCCCAGTCACTGGCTCCAACTGCC < 41bp 1 0.227240150016027 1 0.115539371967316 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506027 chr3:48506018 nonsynonymous SNV 0.658 1 12 hm5C_associated_SNPs_34053 0 0 1 0 2 ATRIP chr3:48505981 3'AG 48505981 Downstream 38bp
chr3 48506018 48506018 1 + C T SKCM 48506027 + 48506007 48506047 41 TGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGCC TGTGCAGAGCCTCTTGCCCCCAGTCACTGGCTCCAACTGCC < 41bp 1 0.227240150016027 1 0.115539371967316 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506027 chr3:48506018 nonsynonymous SNV 0.658 1 12 hm5C_associated_SNPs_34053 0 0 1 0 2 ATRIP chr3:48506061 5'GT 48506061 Upstream 44bp
chr3 126724987 126724987 1 + G A SKCM 126725001 + 126724981 126725021 41 TCTGTGGACTTCGTCTTCTACAACTGCAGCGTCCACCAGTC TCTGTGAACTTCGTCTTCTACAACTGCAGCGTCCACCAGTC < 41bp 1 0.284389522948544 1 0.161382675170898 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126725001 chr3:126724987 nonsynonymous SNV 0.999 0 7 hm5C_associated_SNPs_34056 0 0 1 0 2 PLXNA1 chr3:126724922 3'AG 126724922 Downstream 66bp
chr3 126724987 126724987 1 + G A SKCM 126725001 + 126724981 126725021 41 TCTGTGGACTTCGTCTTCTACAACTGCAGCGTCCACCAGTC TCTGTGAACTTCGTCTTCTACAACTGCAGCGTCCACCAGTC < 41bp 1 0.284389522948544 1 0.161382675170898 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126725001 chr3:126724987 nonsynonymous SNV 0.999 0 7 hm5C_associated_SNPs_34056 0 0 1 0 2 PLXNA1 chr3:126725021 5'GT 126725021 Upstream 35bp
chr20 31374370 31374370 1 + C T SKCM 31374361 + 31374341 31374381 41 CGGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCG CGGGAGAGGCACAGGCCTTCCCCACGTTCTACCCGAGGCCG < 41bp 1 0.315527416008516 1 0.38480281829834 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374361 chr20:31374370 synonymous SNV . 0 30 hm5C_associated_SNPs_34057 0 0 0 0 1 DNMT3B chr20:31374308 3'AG 31374308 Downstream 63bp
chr20 31374370 31374370 1 + C T SKCM 31374362 + 31374342 31374382 41 GGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCGG GGGAGAGGCACAGGCCTTCCCCACGTTCTACCCGAGGCCGG < 41bp 1 0.634011186401334 1 0.565794944763184 experiment 0.731977627197332 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374362 chr20:31374370 synonymous SNV . 0 29 hm5C_associated_SNPs_34058 0 0 0 0 1 DNMT3B chr20:31374308 3'AG 31374308 Downstream 63bp
chr16 5127990 5127990 1 + G A SKCM 5128001 + 5127981 5128021 41 ATGAAGCTGGGCAGCATGCACTCTCCGTTCAGGGCCCGGTA ATGAAGCTGAGCAGCATGCACTCTCCGTTCAGGGCCCGGTA < 41bp 1 0.300701779279413 1 0.0516793727874756 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128001 chr16:5127990 nonsynonymous SNV 0.487 1 10 hm5C_associated_SNPs_34059 0 0 1 0 2 ALG1 chr16:5127908 3'AG 5127908 Downstream 83bp
chr16 5127990 5127990 1 + G A SKCM 5128001 + 5127981 5128021 41 ATGAAGCTGGGCAGCATGCACTCTCCGTTCAGGGCCCGGTA ATGAAGCTGAGCAGCATGCACTCTCCGTTCAGGGCCCGGTA < 41bp 1 0.300701779279413 1 0.0516793727874756 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128001 chr16:5127990 nonsynonymous SNV 0.487 1 10 hm5C_associated_SNPs_34059 0 0 1 0 2 ALG1 chr16:5128018 5'GT 5128018 Upstream 29bp
chr13 48936978 48936978 1 + C G SKCM 48936995 + 48936975 48937015 41 GTTCACCTCGAACACCCAGGCGAGGTCAGAACAGGAGTGCA GTTGACCTCGAACACCCAGGCGAGGTCAGAACAGGAGTGCA < 41bp 1 0.640872638712994 1 0.834452927112579 experiment 0.718254722574012 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RB1 ENSG00000139687 CDS Human protein_coding chr13:48936995 chr13:48936978 stopgain 1.000 1 4 hm5C_associated_SNPs_34061 0 0 1 0 1 RB1 chr13:48936951 3'AG 48936951 Downstream 28bp
chr3 50131270 50131270 1 + A T SKCM 50131269 + 50131249 50131289 41 GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCAT GAGAGGGAGAGCAAGACCATCTTGCTGCGCGGCCTTCCCAT < 41bp 1 0.451765629602454 1 0.150620222091675 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131269 chr3:50131270 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_34062 0 0 1 0 2 RBM5 chr3:50131254 3'AG 50131254 Downstream 17bp
chr3 50131270 50131270 1 + A T SKCM 50131269 + 50131249 50131289 41 GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCAT GAGAGGGAGAGCAAGACCATCTTGCTGCGCGGCCTTCCCAT < 41bp 1 0.451765629602454 1 0.150620222091675 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131269 chr3:50131270 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_34062 0 0 1 0 2 RBM5 chr3:50131308 5'GT 50131308 Upstream 39bp
chr16 2577838 2577838 1 + C T SKCM 2577853 + 2577833 2577873 41 CACCTCCGCTCCTTCGAGGCCGATGCCTTCCAGGACTTGCT CACCTTCGCTCCTTCGAGGCCGATGCCTTCCAGGACTTGCT < 41bp 1 0.124460144750119 1 0.0943412482738495 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2577853 chr16:2577838 nonsynonymous SNV . 0 6 hm5C_associated_SNPs_34063 0 0 1 0 1 AMDHD2 chr16:2577774 3'AG 2577774 Downstream 65bp
chr3 50131271 50131271 1 + T G SKCM 50131269 + 50131249 50131289 41 GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCAT GAGAGGGAGAGCAAGACCATCAGGCTGCGCGGCCTTCCCAT < 41bp 1 0.764676275828803 1 0.933542013168335 experiment 0.470647448342395 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131269 chr3:50131271 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_34066 0 0 1 0 2 RBM5 chr3:50131254 3'AG 50131254 Downstream 18bp
chr3 50131271 50131271 1 + T G SKCM 50131269 + 50131249 50131289 41 GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCAT GAGAGGGAGAGCAAGACCATCAGGCTGCGCGGCCTTCCCAT < 41bp 1 0.764676275828803 1 0.933542013168335 experiment 0.470647448342395 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131269 chr3:50131271 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_34066 0 0 1 0 2 RBM5 chr3:50131308 5'GT 50131308 Upstream 38bp
chr7 142459847 142459847 1 + C T SKCM 142459828 + 142459808 142459848 41 GCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCT GCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCATTT < 41bp 1 0.680556141432566 1 0.163861811161041 experiment 0.638887717134867 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459828 chr7:142459847 synonymous SNV . 0 40 hm5C_associated_SNPs_34068 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 32bp
chr7 142459847 142459847 1 + C T SKCM 142459834 + 142459814 142459854 41 CGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCTCTGGCT CGCCCCTCCAGCCACTGGCACGAAGTGCCTCATTTCTGGCT < 41bp 1 0.619099601162826 1 0.161493808031082 experiment 0.761800797674348 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459834 chr7:142459847 synonymous SNV . 0 34 hm5C_associated_SNPs_34069 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 32bp
chr7 142459847 142459847 1 + C T SKCM 142459841 + 142459821 142459861 41 CCAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAA CCAGCCACTGGCACGAAGTGCCTCATTTCTGGCTGGGGCAA < 41bp 1 0.44526643588866 1 0.0766258835792542 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459841 chr7:142459847 synonymous SNV . 0 27 hm5C_associated_SNPs_34070 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 32bp
chr7 142459847 142459847 1 + C T SKCM 142459842 + 142459822 142459862 41 CAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAC CAGCCACTGGCACGAAGTGCCTCATTTCTGGCTGGGGCAAC < 41bp 1 0.525375277134292 1 0.0487435460090637 experiment 0.949249445731416 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459842 chr7:142459847 synonymous SNV . 0 26 hm5C_associated_SNPs_34071 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 32bp
chr7 142459847 142459847 1 + C T SKCM 142459844 + 142459824 142459864 41 GCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACAC GCCACTGGCACGAAGTGCCTCATTTCTGGCTGGGGCAACAC < 41bp 1 0.337572181721941 1 0.0138657093048096 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459844 chr7:142459847 synonymous SNV . 0 24 hm5C_associated_SNPs_34072 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 32bp
chr7 142459847 142459847 1 + C T SKCM 142459862 + 142459842 142459882 41 CTCATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGA CTCATTTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGA < 41bp 1 0.349544121132758 1 0.169057786464691 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459862 chr7:142459847 synonymous SNV . 0 6 hm5C_associated_SNPs_34073 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 32bp
chr7 142459847 142459847 1 + C T SKCM 142459864 + 142459844 142459884 41 CATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGT CATTTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGT < 41bp 1 0.719297256914087 1 0.407478809356689 experiment 0.561405486171826 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459864 chr7:142459847 synonymous SNV . 0 4 hm5C_associated_SNPs_34074 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 32bp
chr7 142459847 142459847 1 + C T SKCM 142459867 + 142459847 142459887 41 CTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGG TTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGG < 41bp 1 0.405992412154597 1 0.399063408374786 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459867 chr7:142459847 synonymous SNV . 0 1 hm5C_associated_SNPs_34075 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 32bp
chr1 43296183 43296183 1 + C T SKCM 43296173 + 43296153 43296193 41 TCTGGCTGCCTCATCCCTCTCGTCTTCCTCCGGCTGTCTGT TCTGGCTGCCTCATCCCTCTCGTCTTCCTCTGGCTGTCTGT < 41bp 1 0.251838778690441 1 0.146227568387985 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ERMAP ENSG00000164010 CDS Human protein_coding chr1:43296173 chr1:43296183 nonsynonymous SNV 0.001 1 31 hm5C_associated_SNPs_34077 0 0 1 0 2 ERMAP chr1:43296115 3'AG 43296115 Downstream 69bp
chr1 43296183 43296183 1 + C T SKCM 43296173 + 43296153 43296193 41 TCTGGCTGCCTCATCCCTCTCGTCTTCCTCCGGCTGTCTGT TCTGGCTGCCTCATCCCTCTCGTCTTCCTCTGGCTGTCTGT < 41bp 1 0.251838778690441 1 0.146227568387985 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ERMAP ENSG00000164010 CDS Human protein_coding chr1:43296173 chr1:43296183 nonsynonymous SNV 0.001 1 31 hm5C_associated_SNPs_34077 0 0 1 0 2 ERMAP chr1:43296204 5'GT 43296204 Upstream 22bp
chr1 46739339 46739339 1 + C T SKCM 46739322 + 46739302 46739342 41 TGCTGGTCCTGGATTATATTCTGGCGGTGACCCGAAGCCGT TGCTGGTCCTGGATTATATTCTGGCGGTGACCCGAAGTCGT < 41bp 1 0.645406553631365 1 0.39920973777771 experiment 0.709186892737271 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739322 chr1:46739339 synonymous SNV . 0 38 hm5C_associated_SNPs_34078 0 0 1 0 2 RAD54L chr1:46739296 3'AG 46739296 Downstream 44bp
chr1 46739339 46739339 1 + C T SKCM 46739322 + 46739302 46739342 41 TGCTGGTCCTGGATTATATTCTGGCGGTGACCCGAAGCCGT TGCTGGTCCTGGATTATATTCTGGCGGTGACCCGAAGTCGT < 41bp 1 0.645406553631365 1 0.39920973777771 experiment 0.709186892737271 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739322 chr1:46739339 synonymous SNV . 0 38 hm5C_associated_SNPs_34078 0 0 1 0 2 RAD54L chr1:46739419 5'GT 46739419 Upstream 81bp
chr1 43296182 43296182 1 + C T SKCM 43296173 + 43296153 43296193 41 TCTGGCTGCCTCATCCCTCTCGTCTTCCTCCGGCTGTCTGT TCTGGCTGCCTCATCCCTCTCGTCTTCCTTCGGCTGTCTGT < 41bp 1 0.272829322000439 1 0.102446526288986 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ERMAP ENSG00000164010 CDS Human protein_coding chr1:43296173 chr1:43296182 synonymous SNV . 0 30 hm5C_associated_SNPs_34079 0 0 1 0 2 ERMAP chr1:43296115 3'AG 43296115 Downstream 68bp
chr1 43296182 43296182 1 + C T SKCM 43296173 + 43296153 43296193 41 TCTGGCTGCCTCATCCCTCTCGTCTTCCTCCGGCTGTCTGT TCTGGCTGCCTCATCCCTCTCGTCTTCCTTCGGCTGTCTGT < 41bp 1 0.272829322000439 1 0.102446526288986 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ERMAP ENSG00000164010 CDS Human protein_coding chr1:43296173 chr1:43296182 synonymous SNV . 0 30 hm5C_associated_SNPs_34079 0 0 1 0 2 ERMAP chr1:43296204 5'GT 43296204 Upstream 23bp
chr22 24466776 24466776 1 + A T SKCM 24466762 + 24466742 24466782 41 CTGTACTAGGACTCCTTGCTCCGGCTGAAGGACTATCGGCA CTGTACTAGGACTCCTTGCTCCGGCTGAAGGACTTTCGGCA < 41bp 1 0.219149212181277 1 0.900994300842285 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24466762 chr22:24466776 nonsynonymous SNV 0.503 0 35 hm5C_associated_SNPs_34080 0 0 1 0 1 CABIN1 chr22:24466751 3'AG 24466751 Downstream 26bp
chr22 24466776 24466776 1 + A T SKCM 24466763 + 24466743 24466783 41 TGTACTAGGACTCCTTGCTCCGGCTGAAGGACTATCGGCAG TGTACTAGGACTCCTTGCTCCGGCTGAAGGACTTTCGGCAG < 41bp 1 0.458766861057158 1 0.572164535522461 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24466763 chr22:24466776 nonsynonymous SNV 0.503 0 34 hm5C_associated_SNPs_34081 0 0 1 0 1 CABIN1 chr22:24466751 3'AG 24466751 Downstream 26bp
chr22 24466776 24466776 1 + A T SKCM 24466766 + 24466746 24466786 41 ACTAGGACTCCTTGCTCCGGCTGAAGGACTATCGGCAGTGT ACTAGGACTCCTTGCTCCGGCTGAAGGACTTTCGGCAGTGT < 41bp 1 0.434439591648864 1 0.286427736282349 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24466766 chr22:24466776 nonsynonymous SNV 0.503 0 31 hm5C_associated_SNPs_34082 0 0 1 0 1 CABIN1 chr22:24466751 3'AG 24466751 Downstream 26bp
chr6 31727646 31727646 1 + T C SKCM 31727628 + 31727608 31727648 41 CACGAGCAGCTGTCTTAACCCGAGTATTGGACCTTGCCTCC CACGAGCAGCTGTCTTAACCCGAGTATTGGACCTTGCCCCC < 41bp 1 0.708446966411722 1 0.819210231304169 experiment 0.583106067176556 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control MSH5 ENSG00000204410;ENSG00000255152 CDS Human other chr6:31727628 chr6:31727646 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_34083 0 0 1 0 1 MSH5 chr6:31727563 3'AG 31727563 Downstream 84bp
chr16 15788051 15788051 1 + C T SKCM 15788047 + 15788027 15788067 41 GACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCG GACGACTCCACCGGGGGGACCCCCTTCACACCTGCGGCCCG < 41bp 1 0.246519635804988 1 0.057820737361908 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDE1 ENSG00000072864 CDS Human protein_coding chr16:15788047 chr16:15788051 nonsynonymous SNV 0.097 4 25 hm5C_associated_SNPs_34084 0 0 1 0 2 NDE1 chr16:15788022 3'AG 15788022 Downstream 30bp
chr16 15788051 15788051 1 + C T SKCM 15788047 + 15788027 15788067 41 GACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCG GACGACTCCACCGGGGGGACCCCCTTCACACCTGCGGCCCG < 41bp 1 0.246519635804988 1 0.057820737361908 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDE1 ENSG00000072864 CDS Human protein_coding chr16:15788047 chr16:15788051 nonsynonymous SNV 0.097 4 25 hm5C_associated_SNPs_34084 0 0 1 0 2 NDE1 chr16:15788113 5'GT 15788113 Upstream 63bp
chr11 63996771 63996771 1 + G A SKCM 63996766 + 63996746 63996786 41 CAGCCCCTGCTGTTGGGCATCGCCCGAAATGAGACCAGTGC CAGCCCCTGCTGTTGGGCATCGCCCAAAATGAGACCAGTGC < 41bp 1 0.433792592796826 1 0.145754188299179 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63996766 chr11:63996771 nonsynonymous SNV 0.760 1 26 hm5C_associated_SNPs_34085 0 0 0 0 2 NUDT22 chr11:63996719 3'AG 63996719 Downstream 53bp
chr11 63996771 63996771 1 + G A SKCM 63996766 + 63996746 63996786 41 CAGCCCCTGCTGTTGGGCATCGCCCGAAATGAGACCAGTGC CAGCCCCTGCTGTTGGGCATCGCCCAAAATGAGACCAGTGC < 41bp 1 0.433792592796826 1 0.145754188299179 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63996766 chr11:63996771 nonsynonymous SNV 0.760 1 26 hm5C_associated_SNPs_34085 0 0 0 0 2 NUDT22 chr11:63996816 5'GT 63996816 Upstream 46bp
chr16 50813882 50813882 1 + C T SKCM 50813901 + 50813881 50813921 41 CCTCCTTTCTATGGGGTAATCCGTTGGATCGGTCAGCCACC CTTCCTTTCTATGGGGTAATCCGTTGGATCGGTCAGCCACC < 41bp 1 0.301973394135545 1 0.240381181240082 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CYLD ENSG00000083799 CDS Human protein_coding chr16:50813901 chr16:50813882 nonsynonymous SNV 0.952 4 2 hm5C_associated_SNPs_34088 0 0 0 0 1 CYLD chr16:50813955 5'GT 50813955 Upstream 74bp
chr2 119732141 119732141 1 + G A SKCM 119732128 + 119732108 119732148 41 CCCCAAGGCCCACCGGGAGTCAAGGGAGAGGCGGGTGAGTA CCCCAAGGCCCACCGGGAGTCAAGGGAGAGGCGAGTGAGTA < 41bp 1 0.777155430037999 1 0.83530068397522 experiment 0.445689139924003 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MARCO ENSG00000019169 CDS Human protein_coding chr2:119732128 chr2:119732141 nonsynonymous SNV 0.821 5 34 hm5C_associated_SNPs_34089 0 0 0 0 2 MARCO chr2:119732097 3'AG 119732097 Downstream 45bp
chr2 119732141 119732141 1 + G A SKCM 119732128 + 119732108 119732148 41 CCCCAAGGCCCACCGGGAGTCAAGGGAGAGGCGGGTGAGTA CCCCAAGGCCCACCGGGAGTCAAGGGAGAGGCGAGTGAGTA < 41bp 1 0.777155430037999 1 0.83530068397522 experiment 0.445689139924003 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MARCO ENSG00000019169 CDS Human protein_coding chr2:119732128 chr2:119732141 nonsynonymous SNV 0.821 5 34 hm5C_associated_SNPs_34089 0 0 0 0 2 MARCO chr2:119732141 5'GT 119732141 Upstream 1bp
chr20 35857094 35857094 1 + C T SKCM 35857080 + 35857060 35857100 41 GATTGAATTTGACTCTGCCTCTGGCACCTACACTCTCTACT GATTGAATTTGACTCTGCCTCTGGCACCTACACTTTCTACT < 41bp 1 0.433344219304856 1 0.45099875330925 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35857080 chr20:35857094 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_34090 0 0 1 0 1 RPN2 chr20:35857147 5'GT 35857147 Upstream 54bp
chrX 19373831 19373831 1 + C A SKCM 19373838 + 19373818 19373858 41 TATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT TATCCTGTGCGTCAGAGAGGCAACAAGGTTTGCTGCTGCCT < 41bp 1 0.589452067598485 1 0.469660669565201 experiment 0.82109586480303 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19373838 chrX:19373831 synonymous SNV . 0 14 hm5C_associated_SNPs_34091 0 0 1 0 2 PDHA1 chrX:19373804 3'AG 19373804 Downstream 28bp
chrX 19373831 19373831 1 + C A SKCM 19373838 + 19373818 19373858 41 TATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT TATCCTGTGCGTCAGAGAGGCAACAAGGTTTGCTGCTGCCT < 41bp 1 0.589452067598485 1 0.469660669565201 experiment 0.82109586480303 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19373838 chrX:19373831 synonymous SNV . 0 14 hm5C_associated_SNPs_34091 0 0 1 0 2 PDHA1 chrX:19373875 5'GT 19373875 Upstream 45bp
chr11 237091 237091 1 + C T SKCM 237088 + 237068 237108 41 TTCCTACAGCAGAGCCAGAACTCCGGGCCCGGGCAGCCCGC TTCCTACAGCAGAGCCAGAACTCTGGGCCCGGGCAGCCCGC < 41bp 1 0.725402237860335 1 0.833425581455231 experiment 0.549195524279329 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMD13 ENSG00000185627 CDS Human protein_coding chr11:237088 chr11:237091 synonymous SNV . 0 24 hm5C_associated_SNPs_34092 0 0 1 0 1 PSMD13 chr11:237144 5'GT 237144 Upstream 54bp
chrX 23801995 23801995 1 + C T SKCM 23802013 + 23801993 23802033 41 TCCGGAAGGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGA TCTGGAAGGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGA < 41bp 1 0.0364739384414354 1 0.0973440110683441 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAT1 ENSG00000130066 CDS Human protein_coding chrX:23802013 chrX:23801995 nonsynonymous SNV 0.860 0 3 hm5C_associated_SNPs_34095 0 0 1 0 2 SAT1 chrX:23801917 3'AG 23801917 Downstream 79bp
chrX 23801995 23801995 1 + C T SKCM 23802013 + 23801993 23802033 41 TCCGGAAGGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGA TCTGGAAGGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGA < 41bp 1 0.0364739384414354 1 0.0973440110683441 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAT1 ENSG00000130066 CDS Human protein_coding chrX:23802013 chrX:23801995 nonsynonymous SNV 0.860 0 3 hm5C_associated_SNPs_34095 0 0 1 0 2 SAT1 chrX:23802000 5'GT 23802000 Upstream 6bp
chrX 23801995 23801995 1 + C T SKCM 23802014 + 23801994 23802034 41 CCGGAAGGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGAC CTGGAAGGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGAC < 41bp 1 0.0377555207127546 1 0.0501357614994049 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAT1 ENSG00000130066 CDS Human protein_coding chrX:23802014 chrX:23801995 nonsynonymous SNV 0.860 0 2 hm5C_associated_SNPs_34096 0 0 1 0 2 SAT1 chrX:23801917 3'AG 23801917 Downstream 79bp
chrX 23801995 23801995 1 + C T SKCM 23802014 + 23801994 23802034 41 CCGGAAGGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGAC CTGGAAGGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGAC < 41bp 1 0.0377555207127546 1 0.0501357614994049 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAT1 ENSG00000130066 CDS Human protein_coding chrX:23802014 chrX:23801995 nonsynonymous SNV 0.860 0 2 hm5C_associated_SNPs_34096 0 0 1 0 2 SAT1 chrX:23802000 5'GT 23802000 Upstream 6bp
chr7 98591321 98591321 1 + C T SKCM 98591325 + 98591305 98591345 41 CCCTGGAAGGCATCGTCGATCAGATGGTCTGGTTCAGAGAA CCCTGGAAGGCATCGTTGATCAGATGGTCTGGTTCAGAGAA < 41bp 1 0.335637671082517 1 0.569168210029602 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98591325 chr7:98591321 synonymous SNV . 0 17 hm5C_associated_SNPs_34097 0 0 1 0 1 TRRAP chr7:98591360 5'GT 98591360 Upstream 40bp
chr4 20555445 20555445 1 + C T SKCM 20555440 + 20555420 20555460 41 TTTTCCAGAGCAATTGGAGCCAACCCTCTTTACTGTGATTG TTTTCCAGAGCAATTGGAGCCAACCTTCTTTACTGTGATTG < 41bp 1 0.146756979504483 1 0.179114162921906 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20555440 chr4:20555445 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_34098 0 0 1 0 1 SLIT2 chr4:20555428 3'AG 20555428 Downstream 18bp
chr15 91433507 91433507 1 + C T SKCM 91433493 + 91433473 91433513 41 CTCCTGCAGGATGACCGCCACTCCACGTCGTCCTCGGTGAG CTCCTGCAGGATGACCGCCACTCCACGTCGTCCTTGGTGAG < 41bp 1 0.784925640515837 1 0.976242780685425 experiment 0.430148718968325 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control FES ENSG00000182511 CDS Human protein_coding chr15:91433493 chr15:91433507 nonsynonymous SNV 0.797 0 35 hm5C_associated_SNPs_34099 0 0 0 0 1 FES chr15:91433508 5'GT 91433508 Upstream 2bp
chr6 35715398 35715398 1 + C T SKCM 35715401 + 35715381 35715421 41 TGGCACAGAAGAATGACCTTCTCTATGACATTCTCAACTGC TGGCACAGAAGAATGACTTTCTCTATGACATTCTCAACTGC < 41bp 1 0.603529534415455 1 0.892318844795227 experiment 0.79294093116909 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ARMC12 ENSG00000157343 CDS Human protein_coding chr6:35715401 chr6:35715398 nonsynonymous SNV 0.999 3 18 hm5C_associated_SNPs_34100 0 0 0 0 2 ARMC12 chr6:35715353 3'AG 35715353 Downstream 46bp
chr6 35715398 35715398 1 + C T SKCM 35715401 + 35715381 35715421 41 TGGCACAGAAGAATGACCTTCTCTATGACATTCTCAACTGC TGGCACAGAAGAATGACTTTCTCTATGACATTCTCAACTGC < 41bp 1 0.603529534415455 1 0.892318844795227 experiment 0.79294093116909 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ARMC12 ENSG00000157343 CDS Human protein_coding chr6:35715401 chr6:35715398 nonsynonymous SNV 0.999 3 18 hm5C_associated_SNPs_34100 0 0 0 0 2 ARMC12 chr6:35715424 5'GT 35715424 Upstream 27bp
chr17 78022406 78022406 1 + C T SKCM 78022426 + 78022406 78022446 41 CCCACCCCAGGGAAGGAGACCTGCCAGTGTTCCAGGACCAG TCCACCCCAGGGAAGGAGACCTGCCAGTGTTCCAGGACCAG < 41bp 1 0.283141677759086 1 0.048156350851059 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78022426 chr17:78022406 nonsynonymous SNV 0.002 1 1 hm5C_associated_SNPs_34101 0 0 1 0 1 CCDC40 chr17:78022382 3'AG 78022382 Downstream 25bp
chr6 144782340 144782340 1 + G A SKCM 144782344 + 144782324 144782364 41 AATAAACAGAACTGAAGGGCCAACCTGGACATGCATATCTG AATAAACAGAACTGAAAGGCCAACCTGGACATGCATATCTG < 41bp 1 0.047108469658287 1 0.128912806510925 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144782344 chr6:144782340 synonymous SNV . 0 17 hm5C_associated_SNPs_34102 0 0 1 0 1 UTRN chr6:144782333 3'AG 144782333 Downstream 8bp
chr17 7318277 7318277 1 + C T SKCM 7318290 + 7318270 7318310 41 GCCAGGGCTGTTCCAGAAGGCCATCGCCCAGAGTGGCACCG GCCAGGGTTGTTCCAGAAGGCCATCGCCCAGAGTGGCACCG < 41bp 1 0.0349607656304412 1 0.206830054521561 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NLGN2 ENSG00000169992 CDS Human protein_coding chr17:7318290 chr17:7318277 synonymous SNV . 0 8 hm5C_associated_SNPs_34103 0 0 1 0 1 NLGN2 chr17:7318275 3'AG 7318275 Downstream 3bp
chrX 153608118 153608118 1 + C T SKCM 153608138 + 153608118 153608158 41 CCCAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA TCCAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA < 41bp 1 0.405643871829467 1 0.140454769134521 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608138 chrX:153608118 nonsynonymous SNV 0.137 1 1 hm5C_associated_SNPs_34104 0 0 1 0 2 EMD chrX:153608050 3'AG 153608050 Downstream 69bp
chrX 153608118 153608118 1 + C T SKCM 153608138 + 153608118 153608158 41 CCCAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA TCCAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA < 41bp 1 0.405643871829467 1 0.140454769134521 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608138 chrX:153608118 nonsynonymous SNV 0.137 1 1 hm5C_associated_SNPs_34104 0 0 1 0 2 EMD chrX:153608154 5'GT 153608154 Upstream 37bp
chr19 14020750 14020750 1 + C T SKCM 14020742 + 14020722 14020762 41 GGCTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCA GGCTTTGGTCGGGGGCCAGCCCCCAGCCTTGGAGAAGCTCA < 41bp 1 0.424890044253908 1 0.785475134849548 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020742 chr19:14020750 synonymous SNV . 0 29 hm5C_associated_SNPs_34106 0 0 1 0 1 CC2D1A chr19:14020771 5'GT 14020771 Upstream 22bp
chr19 14020750 14020750 1 + C T SKCM 14020743 + 14020723 14020763 41 GCTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAA GCTTTGGTCGGGGGCCAGCCCCCAGCCTTGGAGAAGCTCAA < 41bp 1 0.256021873361623 1 0.758546471595764 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020743 chr19:14020750 synonymous SNV . 0 28 hm5C_associated_SNPs_34107 0 0 1 0 1 CC2D1A chr19:14020771 5'GT 14020771 Upstream 22bp
chr19 14020750 14020750 1 + C T SKCM 14020744 + 14020724 14020764 41 CTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAA CTTTGGTCGGGGGCCAGCCCCCAGCCTTGGAGAAGCTCAAA < 41bp 1 0.183239435409702 1 0.670407116413116 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020744 chr19:14020750 synonymous SNV . 0 27 hm5C_associated_SNPs_34108 0 0 1 0 1 CC2D1A chr19:14020771 5'GT 14020771 Upstream 22bp
chr19 14020750 14020750 1 + C T SKCM 14020745 + 14020725 14020765 41 TTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAAG TTTGGTCGGGGGCCAGCCCCCAGCCTTGGAGAAGCTCAAAG < 41bp 1 0.524323730016332 1 0.788927674293518 experiment 0.951352539967335 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020745 chr19:14020750 synonymous SNV . 0 26 hm5C_associated_SNPs_34109 0 0 1 0 1 CC2D1A chr19:14020771 5'GT 14020771 Upstream 22bp
chr2 217311749 217311749 1 + G A SKCM 217311766 + 217311746 217311786 41 CAAGAGGGTGATCCTGTTGTCGGGCACACCAGCCATGTCCC CAAAAGGGTGATCCTGTTGTCGGGCACACCAGCCATGTCCC < 41bp 1 0.794844772234907 1 0.928126096725464 experiment 0.410310455530187 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311766 chr2:217311749 synonymous SNV . 0 4 hm5C_associated_SNPs_34110 0 0 0 0 1 SMARCAL1 chr2:217311741 3'AG 217311741 Downstream 9bp
chr5 14280513 14280513 1 + G A SKCM 14280517 + 14280497 14280537 41 GACAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCCTGT GACAGGAGGATCTCAGAAGACTCATTTCCTATCTAGCCTGT < 41bp 1 0.327782187755033 1 0.182724982500076 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14280517 chr5:14280513 synonymous SNV . 0 17 hm5C_associated_SNPs_34111 0 0 1 0 2 TRIO chr5:14280431 3'AG 14280431 Downstream 83bp
chr5 14280513 14280513 1 + G A SKCM 14280517 + 14280497 14280537 41 GACAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCCTGT GACAGGAGGATCTCAGAAGACTCATTTCCTATCTAGCCTGT < 41bp 1 0.327782187755033 1 0.182724982500076 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14280517 chr5:14280513 synonymous SNV . 0 17 hm5C_associated_SNPs_34111 0 0 1 0 2 TRIO chr5:14280545 5'GT 14280545 Upstream 33bp
chr21 47769615 47769615 1 + G A SKCM 47769611 + 47769591 47769631 41 TTTCTAGGGGCCCTTAGGAACCTGGAGAGTCATCATCAAGC TTTCTAGGGGCCCTTAGGAACCTGAAGAGTCATCATCAAGC < 41bp 1 0.105745035748074 1 0.131559520959854 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47769611 chr21:47769615 nonsynonymous SNV 0.017 1 25 hm5C_associated_SNPs_34112 0 0 1 0 1 PCNT chr21:47769598 3'AG 47769598 Downstream 18bp
chr7 142458544 142458544 1 + C T SKCM 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATT < 41bp 1 0.663442708932919 1 0.48211145401001 experiment 0.673114582134162 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458544 nonsynonymous SNV 0.751 3 41 hm5C_associated_SNPs_34116 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 65bp
chr7 142458544 142458544 1 + C T SKCM 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATT < 41bp 1 0.663442708932919 1 0.48211145401001 experiment 0.673114582134162 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458544 nonsynonymous SNV 0.751 3 41 hm5C_associated_SNPs_34116 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 22bp
chr7 142458544 142458544 1 + C T SKCM 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATTAGC < 41bp 1 0.37337847659734 1 0.621204316616058 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458544 nonsynonymous SNV 0.751 3 38 hm5C_associated_SNPs_34117 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 65bp
chr7 142458544 142458544 1 + C T SKCM 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATTAGC < 41bp 1 0.37337847659734 1 0.621204316616058 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458544 nonsynonymous SNV 0.751 3 38 hm5C_associated_SNPs_34117 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 22bp
chr7 142458544 142458544 1 + C T SKCM 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGCTCCCTCATCAACGAACAGTGGGTGGTATTAGCAGGC < 41bp 1 0.463831963914031 1 0.305186033248901 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458544 nonsynonymous SNV 0.751 3 34 hm5C_associated_SNPs_34118 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 65bp
chr7 142458544 142458544 1 + C T SKCM 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGCTCCCTCATCAACGAACAGTGGGTGGTATTAGCAGGC < 41bp 1 0.463831963914031 1 0.305186033248901 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458544 nonsynonymous SNV 0.751 3 34 hm5C_associated_SNPs_34118 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 22bp
chr7 142458544 142458544 1 + C T SKCM 142458547 + 142458527 142458567 41 CGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT CGAACAGTGGGTGGTATTAGCAGGCCACTGCTACAAGTCGT < 41bp 1 0.664767623647621 1 0.809011936187744 experiment 0.670464752704758 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458547 chr7:142458544 nonsynonymous SNV 0.751 3 18 hm5C_associated_SNPs_34119 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 65bp
chr7 142458544 142458544 1 + C T SKCM 142458547 + 142458527 142458567 41 CGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT CGAACAGTGGGTGGTATTAGCAGGCCACTGCTACAAGTCGT < 41bp 1 0.664767623647621 1 0.809011936187744 experiment 0.670464752704758 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458547 chr7:142458544 nonsynonymous SNV 0.751 3 18 hm5C_associated_SNPs_34119 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 22bp
chr7 142458544 142458544 1 + C T SKCM 142458551 + 142458531 142458571 41 CAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGT CAGTGGGTGGTATTAGCAGGCCACTGCTACAAGTCGTAAGT < 41bp 1 0.188825764063738 1 0.34391862154007 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458551 chr7:142458544 nonsynonymous SNV 0.751 3 14 hm5C_associated_SNPs_34120 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 65bp
chr7 142458544 142458544 1 + C T SKCM 142458551 + 142458531 142458571 41 CAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGT CAGTGGGTGGTATTAGCAGGCCACTGCTACAAGTCGTAAGT < 41bp 1 0.188825764063738 1 0.34391862154007 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458551 chr7:142458544 nonsynonymous SNV 0.751 3 14 hm5C_associated_SNPs_34120 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 22bp
chr7 142458544 142458544 1 + C T SKCM 142458552 + 142458532 142458572 41 AGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTG AGTGGGTGGTATTAGCAGGCCACTGCTACAAGTCGTAAGTG < 41bp 1 0.446376506809813 1 0.239253848791122 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458552 chr7:142458544 nonsynonymous SNV 0.751 3 13 hm5C_associated_SNPs_34121 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 65bp
chr7 142458544 142458544 1 + C T SKCM 142458552 + 142458532 142458572 41 AGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTG AGTGGGTGGTATTAGCAGGCCACTGCTACAAGTCGTAAGTG < 41bp 1 0.446376506809813 1 0.239253848791122 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458552 chr7:142458544 nonsynonymous SNV 0.751 3 13 hm5C_associated_SNPs_34121 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 22bp
chr7 142458544 142458544 1 + C T SKCM 142458554 + 142458534 142458574 41 TGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTG TGGGTGGTATTAGCAGGCCACTGCTACAAGTCGTAAGTGTG < 41bp 1 0.275441267389731 1 0.11964425444603 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458554 chr7:142458544 nonsynonymous SNV 0.751 3 11 hm5C_associated_SNPs_34122 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 65bp
chr7 142458544 142458544 1 + C T SKCM 142458554 + 142458534 142458574 41 TGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTG TGGGTGGTATTAGCAGGCCACTGCTACAAGTCGTAAGTGTG < 41bp 1 0.275441267389731 1 0.11964425444603 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458554 chr7:142458544 nonsynonymous SNV 0.751 3 11 hm5C_associated_SNPs_34122 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 22bp
chr7 142458544 142458544 1 + C T SKCM 142458557 + 142458537 142458577 41 GTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTGGGG GTGGTATTAGCAGGCCACTGCTACAAGTCGTAAGTGTGGGG < 41bp 1 0.57699241249065 1 0.842001020908356 experiment 0.846015175018699 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458557 chr7:142458544 nonsynonymous SNV 0.751 3 8 hm5C_associated_SNPs_34123 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 65bp
chr7 142458544 142458544 1 + C T SKCM 142458557 + 142458537 142458577 41 GTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTGGGG GTGGTATTAGCAGGCCACTGCTACAAGTCGTAAGTGTGGGG < 41bp 1 0.57699241249065 1 0.842001020908356 experiment 0.846015175018699 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458557 chr7:142458544 nonsynonymous SNV 0.751 3 8 hm5C_associated_SNPs_34123 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 22bp
chr7 142458544 142458544 1 + C T SKCM 142458560 + 142458540 142458580 41 GTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTGGGGCCC GTATTAGCAGGCCACTGCTACAAGTCGTAAGTGTGGGGCCC < 41bp 1 0.538978926923023 1 0.801587104797363 experiment 0.922042146153955 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458560 chr7:142458544 nonsynonymous SNV 0.751 3 5 hm5C_associated_SNPs_34124 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 65bp
chr7 142458544 142458544 1 + C T SKCM 142458560 + 142458540 142458580 41 GTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTGGGGCCC GTATTAGCAGGCCACTGCTACAAGTCGTAAGTGTGGGGCCC < 41bp 1 0.538978926923023 1 0.801587104797363 experiment 0.922042146153955 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458560 chr7:142458544 nonsynonymous SNV 0.751 3 5 hm5C_associated_SNPs_34124 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 22bp
chr18 44626649 44626649 1 + G A SKCM 44626629 + 44626609 44626649 41 TTTTTGGCTGTTTCAGGAGACTGAGGGCTACTCAGGCTCAG TTTTTGGCTGTTTCAGGAGACTGAGGGCTACTCAGGCTCAA < 41bp 1 0.725924473732339 1 0.714315891265869 experiment 0.548151052535321 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control KATNAL2 ENSG00000167216 CDS Human protein_coding chr18:44626629 chr18:44626649 nonsynonymous SNV 0.987 5 41 hm5C_associated_SNPs_34125 0 0 0 0 2 KATNAL2 chr18:44626625 3'AG 44626625 Downstream 25bp
chr18 44626649 44626649 1 + G A SKCM 44626629 + 44626609 44626649 41 TTTTTGGCTGTTTCAGGAGACTGAGGGCTACTCAGGCTCAG TTTTTGGCTGTTTCAGGAGACTGAGGGCTACTCAGGCTCAA < 41bp 1 0.725924473732339 1 0.714315891265869 experiment 0.548151052535321 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control KATNAL2 ENSG00000167216 CDS Human protein_coding chr18:44626629 chr18:44626649 nonsynonymous SNV 0.987 5 41 hm5C_associated_SNPs_34125 0 0 0 0 2 KATNAL2 chr18:44626727 5'GT 44626727 Upstream 79bp
chr16 12662421 12662421 1 + C T SKCM 12662431 + 12662411 12662451 41 TTCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGA TTCCCGCTTCTCCAAACTGTCCCGGGGTCAGCCCCGGGAGA < 41bp 1 0.341155910406276 1 0.752170085906982 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662431 chr16:12662421 nonsynonymous SNV 0.995 2 11 hm5C_associated_SNPs_34127 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 59bp
chr16 12662421 12662421 1 + C T SKCM 12662432 + 12662412 12662452 41 TCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGAC TCCCGCTTCTCCAAACTGTCCCGGGGTCAGCCCCGGGAGAC < 41bp 1 0.36153458663308 1 0.539273977279663 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662432 chr16:12662421 nonsynonymous SNV 0.995 2 10 hm5C_associated_SNPs_34128 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 59bp
chr16 12662421 12662421 1 + C T SKCM 12662433 + 12662413 12662453 41 CCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGACC CCCGCTTCTCCAAACTGTCCCGGGGTCAGCCCCGGGAGACC < 41bp 1 0.453113804510623 1 0.886700391769409 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662433 chr16:12662421 nonsynonymous SNV 0.995 2 9 hm5C_associated_SNPs_34129 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 59bp
chr20 4679899 4679899 1 + C T SKCM 4679908 + 4679888 4679928 41 ATGCTGGTTCTCTTTGTGGCCACATGGAGTGACCTGGGCCT ATGCTGGTTCTTTTTGTGGCCACATGGAGTGACCTGGGCCT < 41bp 1 0.5606560230855 1 0.674317479133606 experiment 0.878687953829 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRNP ENSG00000171867 CDS Human protein_coding chr20:4679908 chr20:4679899 synonymous SNV . 0 12 hm5C_associated_SNPs_34131 0 0 1 0 1 PRNP chr20:4679862 3'AG 4679862 Downstream 38bp
chr2 29344298 29344298 1 + C T SKCM 29344282 + 29344262 29344302 41 TAGAGGACCTTCCAGATTTTCCATTAGAAGGAAATCCTTTG TAGAGGACCTTCCAGATTTTCCATTAGAAGGAAATCTTTTG < 41bp 1 0.0653890283109053 1 0.0650585293769836 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29344282 chr2:29344298 nonsynonymous SNV 0.642 1 37 hm5C_associated_SNPs_34132 0 0 1 1 1 CLIP4 chr2:29344387 5'GT 29344387 Upstream 90bp
chr16 4727524 4727524 1 + T A SKCM 4727512 + 4727492 4727532 41 GGTGCGGAAGAAGCCAGGAGCCCTGTCCCCCGTGTCCTTCA GGTGCGGAAGAAGCCAGGAGCCCTGTCCCCCGAGTCCTTCA < 41bp 1 0.145627049015766 1 0.0706493258476257 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MGRN1 ENSG00000102858 CDS Human protein_coding chr16:4727512 chr16:4727524 nonsynonymous SNV 0.976 2 33 hm5C_associated_SNPs_34133 0 0 1 0 2 MGRN1 chr16:4727464 3'AG 4727464 Downstream 61bp
chr16 4727524 4727524 1 + T A SKCM 4727512 + 4727492 4727532 41 GGTGCGGAAGAAGCCAGGAGCCCTGTCCCCCGTGTCCTTCA GGTGCGGAAGAAGCCAGGAGCCCTGTCCCCCGAGTCCTTCA < 41bp 1 0.145627049015766 1 0.0706493258476257 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MGRN1 ENSG00000102858 CDS Human protein_coding chr16:4727512 chr16:4727524 nonsynonymous SNV 0.976 2 33 hm5C_associated_SNPs_34133 0 0 1 0 2 MGRN1 chr16:4727573 5'GT 4727573 Upstream 50bp
chr2 54872391 54872391 1 + G A SKCM 54872378 + 54872358 54872398 41 GCCCTCAGATGCTGGAGAATCAGATGGAAGTGCGGAAGAAG GCCCTCAGATGCTGGAGAATCAGATGGAAGTGCAGAAGAAG < 41bp 1 0.349727074421277 1 0.802324831485748 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872378 chr2:54872391 nonsynonymous SNV 0.999 1 34 hm5C_associated_SNPs_34135 0 0 1 0 1 SPTBN1 chr2:54872366 3'AG 54872366 Downstream 26bp
chr17 7467091 7467091 1 + C T SKCM 7467100 + 7467080 7467120 41 TCCAAAGTCTCCTCTGGACCCTGACTCGGGTAAGGTGGGAA TCCAAAGTCTCTTCTGGACCCTGACTCGGGTAAGGTGGGAA < 41bp 1 0.341691220188211 1 0.0686002671718597 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SENP3 ENSG00000161956 CDS Human protein_coding chr17:7467100 chr17:7467091 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_34137 0 0 1 0 1 SENP3 chr17:7467108 5'GT 7467108 Upstream 18bp
chr1 57157079 57157079 1 + C T SKCM 57157082 + 57157062 57157102 41 AAAAGATACCAGGTGATCAGCACTCCAACAGATTTTTTTAT AAAAGATACCAGGTGATTAGCACTCCAACAGATTTTTTTAT < 41bp 1 0.0718620148204232 1 0.303920388221741 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57157082 chr1:57157079 synonymous SNV . 0 18 hm5C_associated_SNPs_34140 0 0 1 0 2 PRKAA2 chr1:57157067 3'AG 57157067 Downstream 13bp
chr1 57157079 57157079 1 + C T SKCM 57157082 + 57157062 57157102 41 AAAAGATACCAGGTGATCAGCACTCCAACAGATTTTTTTAT AAAAGATACCAGGTGATTAGCACTCCAACAGATTTTTTTAT < 41bp 1 0.0718620148204232 1 0.303920388221741 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57157082 chr1:57157079 synonymous SNV . 0 18 hm5C_associated_SNPs_34140 0 0 1 0 2 PRKAA2 chr1:57157160 5'GT 57157160 Upstream 82bp
chr11 209918 209918 1 + C T SKCM 209927 + 209907 209947 41 GCTCCTTCCTTCCCAAGAGACTGAGCGGGCCATGGAGATCC GCTCCTTCCTTTCCAAGAGACTGAGCGGGCCATGGAGATCC < 41bp 1 0.538299920176178 1 0.0648793280124664 experiment 0.923400159647644 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:209927 chr11:209918 nonsynonymous SNV 0.743 1 12 hm5C_associated_SNPs_34141 0 0 0 0 1 RIC8A chr11:210000 5'GT 210000 Upstream 83bp
chr17 53852193 53852193 1 + G T SKCM 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTCGATAACCCGGGTGGCCAAATTCCTTCCTGGCTCATT < 41bp 1 0.291017633032734 1 0.187031686306 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852193 synonymous SNV . 0 29 hm5C_associated_SNPs_34143 0 0 1 1 2 PCTP chr17:53852153 3'AG 53852153 Downstream 41bp
chr17 53852193 53852193 1 + G T SKCM 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTCGATAACCCGGGTGGCCAAATTCCTTCCTGGCTCATT < 41bp 1 0.291017633032734 1 0.187031686306 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852193 synonymous SNV . 0 29 hm5C_associated_SNPs_34143 0 0 1 1 2 PCTP chr17:53852220 5'GT 53852220 Upstream 28bp
chr7 141341105 141341105 1 + C A SKCM 141341103 + 141341083 141341123 41 CACGGGACCTACAGAGAGACCTCCCAATGAACCAGAGGAGA CACGGGACCTACAGAGAGACCTACCAATGAACCAGAGGAGA < 41bp 1 0.231623335894974 1 0.0470375120639801 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGK ENSG00000006530 CDS Human protein_coding chr7:141341103 chr7:141341105 nonsynonymous SNV 0.989 1 23 hm5C_associated_SNPs_34144 0 0 1 0 2 AGK chr7:141341048 3'AG 141341048 Downstream 58bp
chr7 141341105 141341105 1 + C A SKCM 141341103 + 141341083 141341123 41 CACGGGACCTACAGAGAGACCTCCCAATGAACCAGAGGAGA CACGGGACCTACAGAGAGACCTACCAATGAACCAGAGGAGA < 41bp 1 0.231623335894974 1 0.0470375120639801 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGK ENSG00000006530 CDS Human protein_coding chr7:141341103 chr7:141341105 nonsynonymous SNV 0.989 1 23 hm5C_associated_SNPs_34144 0 0 1 0 2 AGK chr7:141341198 5'GT 141341198 Upstream 94bp
chr20 32217709 32217709 1 + C T SKCM 32217689 + 32217669 32217709 41 GAGTTGGTCTCCAGGCAGCACAGCCCTGGGAGTGCAGATTC GAGTTGGTCTCCAGGCAGCACAGCCCTGGGAGTGCAGATTT < 41bp 1 0.351875689352202 1 0.0469240248203278 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CBFA2T2 ENSG00000078699 CDS Human protein_coding chr20:32217689 chr20:32217709 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_34145 0 0 1 0 1 CBFA2T2 chr20:32217720 5'GT 32217720 Upstream 12bp
chr9 134354730 134354730 1 + C T SKCM 134354717 + 134354697 134354737 41 AGAACAACTTATGTCTGGAGCAAGGTGACGTGACCGTGCCT AGAACAACTTATGTCTGGAGCAAGGTGACGTGATCGTGCCT < 41bp 1 0.319156567293777 1 0.769617795944214 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134354717 chr9:134354730 nonsynonymous SNV 0.161 1 34 hm5C_associated_SNPs_34146 0 0 1 0 1 PRRC2B chr9:134354639 3'AG 134354639 Downstream 92bp
chr9 134354730 134354730 1 + C T SKCM 134354743 + 134354723 134354763 41 GACGTGACCGTGCCTGGCAGCAGCCTGGGCACTGAGATCTG GACGTGATCGTGCCTGGCAGCAGCCTGGGCACTGAGATCTG < 41bp 1 0.31059577443875 1 0.607393383979797 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134354743 chr9:134354730 nonsynonymous SNV 0.161 1 8 hm5C_associated_SNPs_34147 0 0 1 0 1 PRRC2B chr9:134354639 3'AG 134354639 Downstream 92bp
chr1 23236991 23236991 1 + C T SKCM 23236971 + 23236951 23236991 41 TGGACTGTTGGCAGAAGGACCGCAACCACCGGCCCAAGTTC TGGACTGTTGGCAGAAGGACCGCAACCACCGGCCCAAGTTT < 41bp 1 0.455247426384286 1 0.370047986507416 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23236971 chr1:23236991 synonymous SNV . 0 41 hm5C_associated_SNPs_34148 0 0 0 0 1 EPHB2 chr1:23237068 5'GT 23237068 Upstream 78bp
chr12 57600328 57600328 1 + C T SKCM 57600323 + 57600303 57600343 41 AGCCTGTTCCCCGGCCACCCCCATTCGGCTTACGAGCAGGC AGCCTGTTCCCCGGCCACCCCCATTTGGCTTACGAGCAGGC < 41bp 1 0.0205683379986143 1 0.205042541027069 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57600323 chr12:57600328 nonsynonymous SNV 0.917 2 26 hm5C_associated_SNPs_34149 0 0 0 0 1 LRP1 chr12:57600256 3'AG 57600256 Downstream 73bp
chr10 64148314 64148314 1 + C T SKCM 64148330 + 64148310 64148350 41 TTGTCCGTGATCTCAGCGGGCACGTGGTGAGTCACCCCGGG TTGTTCGTGATCTCAGCGGGCACGTGGTGAGTCACCCCGGG < 41bp 1 0.625673210822347 1 0.557312071323395 experiment 0.748653578355306 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF365 ENSG00000138311 CDS Human protein_coding chr10:64148330 chr10:64148314 synonymous SNV . 0 5 hm5C_associated_SNPs_34152 0 0 0 0 1 ZNF365 chr10:64148335 5'GT 64148335 Upstream 22bp
chr19 35501050 35501050 1 + C T SKCM 35501031 + 35501011 35501051 41 TGCAGCGTGAGATCCTGCTCCAGGGCCGCCTCTACCTCTCT TGCAGCGTGAGATCCTGCTCCAGGGCCGCCTCTACCTCTTT < 41bp 1 0.702883911400248 1 0.776303231716156 experiment 0.594232177199505 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35501031 chr19:35501050 nonsynonymous SNV 0.817 5 40 hm5C_associated_SNPs_34153 0 0 1 0 2 GRAMD1A chr19:35500996 3'AG 35500996 Downstream 55bp
chr19 35501050 35501050 1 + C T SKCM 35501031 + 35501011 35501051 41 TGCAGCGTGAGATCCTGCTCCAGGGCCGCCTCTACCTCTCT TGCAGCGTGAGATCCTGCTCCAGGGCCGCCTCTACCTCTTT < 41bp 1 0.702883911400248 1 0.776303231716156 experiment 0.594232177199505 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35501031 chr19:35501050 nonsynonymous SNV 0.817 5 40 hm5C_associated_SNPs_34153 0 0 1 0 2 GRAMD1A chr19:35501099 5'GT 35501099 Upstream 50bp
chr1 78001592 78001592 1 + C T SKCM 78001588 + 78001568 78001608 41 TCGGCAGACACCATGACCAACCGCCTTCTCCAAAGGAGCCG TCGGCAGACACCATGACCAACCGCTTTCTCCAAAGGAGCCG < 41bp 1 0.20933596291842 1 0.0548475086688995 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001588 chr1:78001592 nonsynonymous SNV 0.969 3 25 hm5C_associated_SNPs_34154 0 0 0 0 1 AK5 chr1:78001532 3'AG 78001532 Downstream 61bp
chr1 78001592 78001592 1 + C T SKCM 78001612 + 78001592 78001632 41 CTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGTGGACGACAC TTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGTGGACGACAC < 41bp 1 0.416642092420419 1 0.367867410182953 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001612 chr1:78001592 nonsynonymous SNV 0.969 3 1 hm5C_associated_SNPs_34155 0 0 0 0 1 AK5 chr1:78001532 3'AG 78001532 Downstream 61bp
chr11 8016890 8016890 1 + G A SKCM 8016893 + 8016873 8016913 41 GTTCCCGATGACTTTGAGACCATGCTCAACAGCAACATCAA GTTCCCGATGACTTTGAAACCATGCTCAACAGCAACATCAA < 41bp 1 0.25846454027755 1 0.335493803024292 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF3F ENSG00000175390 CDS Human protein_coding chr11:8016893 chr11:8016890 synonymous SNV . 0 18 hm5C_associated_SNPs_34157 0 0 1 0 2 EIF3F chr11:8016801 3'AG 8016801 Downstream 90bp
chr11 8016890 8016890 1 + G A SKCM 8016893 + 8016873 8016913 41 GTTCCCGATGACTTTGAGACCATGCTCAACAGCAACATCAA GTTCCCGATGACTTTGAAACCATGCTCAACAGCAACATCAA < 41bp 1 0.25846454027755 1 0.335493803024292 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF3F ENSG00000175390 CDS Human protein_coding chr11:8016893 chr11:8016890 synonymous SNV . 0 18 hm5C_associated_SNPs_34157 0 0 1 0 2 EIF3F chr11:8016914 5'GT 8016914 Upstream 25bp
chr22 32270373 32270373 1 + G A SKCM 32270365 + 32270345 32270385 41 ACGTGGAGGGGATCCAGACACAGGCGATGGCCATTGACATC ACGTGGAGGGGATCCAGACACAGGCGATAGCCATTGACATC < 41bp 1 0.775151583004044 1 0.778709471225739 experiment 0.449696833991912 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32270365 chr22:32270373 nonsynonymous SNV 0.995 1 29 hm5C_associated_SNPs_34158 0 0 1 0 1 DEPDC5 chr22:32270391 5'GT 32270391 Upstream 19bp
chr18 74631830 74631830 1 + T C SKCM 74631822 + 74631802 74631842 41 CACTTTCACGGAGGAGGAGACAGCCCAGTTAGCCAAGATCC CACTTTCACGGAGGAGGAGACAGCCCAGCTAGCCAAGATCC < 41bp 1 0.354919924417819 1 0.27128392457962 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74631822 chr18:74631830 synonymous SNV . 0 29 hm5C_associated_SNPs_34159 0 0 1 0 1 ZNF236 chr18:74631732 3'AG 74631732 Downstream 99bp
chr10 72324241 72324241 1 + C T SKCM 72324236 + 72324216 72324256 41 TACCTCCACCTGGAGAAGGCCGACTCCTGGCAGAGGCCCTT TACCTCCACCTGGAGAAGGCCGACTTCTGGCAGAGGCCCTT < 41bp 1 0.224445574180203 1 0.321542948484421 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72324236 chr10:72324241 nonsynonymous SNV 0.920 2 26 hm5C_associated_SNPs_34160 0 0 1 0 1 PALD1 chr10:72324275 5'GT 72324275 Upstream 35bp
chr14 96998708 96998708 1 + C G SKCM 96998728 + 96998708 96998748 41 CATTGACAACTTCAGGTTAACTCTGAGAGCTATCAAACTAT GATTGACAACTTCAGGTTAACTCTGAGAGCTATCAAACTAT < 41bp 1 0.550250922616556 1 0.0676973164081573 experiment 0.899498154766888 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:96998728 chr14:96998708 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_34161 0 0 1 0 2 PAPOLA chr14:96998668 3'AG 96998668 Downstream 41bp
chr14 96998708 96998708 1 + C G SKCM 96998728 + 96998708 96998748 41 CATTGACAACTTCAGGTTAACTCTGAGAGCTATCAAACTAT GATTGACAACTTCAGGTTAACTCTGAGAGCTATCAAACTAT < 41bp 1 0.550250922616556 1 0.0676973164081573 experiment 0.899498154766888 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:96998728 chr14:96998708 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_34161 0 0 1 0 2 PAPOLA chr14:96998757 5'GT 96998757 Upstream 50bp
chr1 155279920 155279920 1 + C T SKCM 155279915 + 155279895 155279935 41 AAGCAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGGT AAGCAGGATTTCGTTCAGCACTTCTTCCAGATCGTTAGGGT < 41bp 1 0.187800439062329 1 0.052276611328125 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155279915 chr1:155279920 nonsynonymous SNV 0.990 1 26 hm5C_associated_SNPs_34162 0 0 1 0 3 FDPS chr1:155279834 3'AG 155279834 Downstream 87bp
chr1 155279920 155279920 1 + C T SKCM 155279915 + 155279895 155279935 41 AAGCAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGGT AAGCAGGATTTCGTTCAGCACTTCTTCCAGATCGTTAGGGT < 41bp 1 0.187800439062329 1 0.052276611328125 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155279915 chr1:155279920 nonsynonymous SNV 0.990 1 26 hm5C_associated_SNPs_34162 0 0 1 0 3 FDPS chr1:155279855 3'AG 155279855 Downstream 66bp
chr1 155279920 155279920 1 + C T SKCM 155279915 + 155279895 155279935 41 AAGCAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGGT AAGCAGGATTTCGTTCAGCACTTCTTCCAGATCGTTAGGGT < 41bp 1 0.187800439062329 1 0.052276611328125 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155279915 chr1:155279920 nonsynonymous SNV 0.990 1 26 hm5C_associated_SNPs_34162 0 0 1 0 3 FDPS chr1:155279996 5'GT 155279996 Upstream 77bp
chr21 46931086 46931086 1 + C T SKCM 46931104 + 46931084 46931124 41 GCCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC GCTCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC < 41bp 1 0.0637310530629721 1 0.168604522943497 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931104 chr21:46931086 nonsynonymous SNV 0.025 0 3 hm5C_associated_SNPs_34164 0 0 1 0 2 COL18A1 chr21:46931025 3'AG 46931025 Downstream 62bp
chr21 46931086 46931086 1 + C T SKCM 46931104 + 46931084 46931124 41 GCCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC GCTCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC < 41bp 1 0.0637310530629721 1 0.168604522943497 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931104 chr21:46931086 nonsynonymous SNV 0.025 0 3 hm5C_associated_SNPs_34164 0 0 1 0 2 COL18A1 chr21:46931140 5'GT 46931140 Upstream 55bp
chr21 46931086 46931086 1 + C T SKCM 46931105 + 46931085 46931125 41 CCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT CTCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT < 41bp 1 0.0712427988009956 1 0.0420300662517548 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931105 chr21:46931086 nonsynonymous SNV 0.025 0 2 hm5C_associated_SNPs_34165 0 0 1 0 2 COL18A1 chr21:46931025 3'AG 46931025 Downstream 62bp
chr21 46931086 46931086 1 + C T SKCM 46931105 + 46931085 46931125 41 CCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT CTCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT < 41bp 1 0.0712427988009956 1 0.0420300662517548 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931105 chr21:46931086 nonsynonymous SNV 0.025 0 2 hm5C_associated_SNPs_34165 0 0 1 0 2 COL18A1 chr21:46931140 5'GT 46931140 Upstream 55bp
chr22 29695307 29695307 1 + C T SKCM 29695312 + 29695292 29695332 41 GCTTCCTCCCGCCACCCTTTCCGCCCCCGGGTAGGTGCAGG GCTTCCTCCCGCCACTCTTTCCGCCCCCGGGTAGGTGCAGG < 41bp 1 0.25101854107919 1 0.403990179300308 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695312 chr22:29695307 nonsynonymous SNV 0.989 2 16 hm5C_associated_SNPs_34166 0 0 1 0 2 EWSR1 chr22:29695224 3'AG 29695224 Downstream 84bp
chr22 29695307 29695307 1 + C T SKCM 29695312 + 29695292 29695332 41 GCTTCCTCCCGCCACCCTTTCCGCCCCCGGGTAGGTGCAGG GCTTCCTCCCGCCACTCTTTCCGCCCCCGGGTAGGTGCAGG < 41bp 1 0.25101854107919 1 0.403990179300308 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695312 chr22:29695307 nonsynonymous SNV 0.989 2 16 hm5C_associated_SNPs_34166 0 0 1 0 2 EWSR1 chr22:29695321 5'GT 29695321 Upstream 15bp
chr22 29695308 29695308 1 + C T SKCM 29695312 + 29695292 29695332 41 GCTTCCTCCCGCCACCCTTTCCGCCCCCGGGTAGGTGCAGG GCTTCCTCCCGCCACCTTTTCCGCCCCCGGGTAGGTGCAGG < 41bp 1 0.276835239177195 1 0.514437675476074 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695312 chr22:29695308 synonymous SNV . 0 17 hm5C_associated_SNPs_34167 0 0 1 0 2 EWSR1 chr22:29695224 3'AG 29695224 Downstream 85bp
chr22 29695308 29695308 1 + C T SKCM 29695312 + 29695292 29695332 41 GCTTCCTCCCGCCACCCTTTCCGCCCCCGGGTAGGTGCAGG GCTTCCTCCCGCCACCTTTTCCGCCCCCGGGTAGGTGCAGG < 41bp 1 0.276835239177195 1 0.514437675476074 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695312 chr22:29695308 synonymous SNV . 0 17 hm5C_associated_SNPs_34167 0 0 1 0 2 EWSR1 chr22:29695321 5'GT 29695321 Upstream 14bp
chr17 1637437 1637437 1 + C T SKCM 1637447 + 1637427 1637467 41 GCGTCTTCTTCGTGGGCCAGCTTGAGGCCCCGCAGCACGTG GCGTCTTCTTTGTGGGCCAGCTTGAGGCCCCGCAGCACGTG < 41bp 1 0.556314997600412 1 0.223007082939148 experiment 0.887370004799176 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1637447 chr17:1637437 synonymous SNV . 0 11 hm5C_associated_SNPs_34168 0 0 0 0 1 WDR81 chr17:1637510 5'GT 1637510 Upstream 74bp
chr14 102449438 102449438 1 + G A SKCM 102449442 + 102449422 102449462 41 ATTTGCTGTCTGCCACGGAGCTGGACAAAATAAGACAGGCG ATTTGCTGTCTGCCACAGAGCTGGACAAAATAAGACAGGCG < 41bp 1 0.338729696072348 1 0.518049657344818 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102449442 chr14:102449438 synonymous SNV . 0 17 hm5C_associated_SNPs_34169 0 0 1 0 1 DYNC1H1 chr14:102449356 3'AG 102449356 Downstream 83bp
chr1 957749 957749 1 + C T SKCM 957744 + 957724 957764 41 CTTTGTGAACCCTGCACCCCCATACCTGTGGCCAGCCCACA CTTTGTGAACCCTGCACCCCCATACTTGTGGCCAGCCCACA < 41bp 1 0.0568435915073127 1 0.180506378412247 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:957744 chr1:957749 synonymous SNV . 0 26 hm5C_associated_SNPs_34170 0 0 1 0 1 AGRN chr1:957842 5'GT 957842 Upstream 94bp
chr15 64410335 64410335 1 + C T SKCM 64410330 + 64410310 64410350 41 TTTTAGATGCCACAGTGGAGCTATCCTTGGACAGCACACAA TTTTAGATGCCACAGTGGAGCTATCTTTGGACAGCACACAA < 41bp 1 0.0802428666518766 1 0.15072625875473 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410330 chr15:64410335 synonymous SNV . 0 26 hm5C_associated_SNPs_34171 0 0 1 0 1 SNX1 chr15:64410316 3'AG 64410316 Downstream 20bp
chr15 64410335 64410335 1 + C T SKCM 64410334 + 64410314 64410354 41 AGATGCCACAGTGGAGCTATCCTTGGACAGCACACAAAATA AGATGCCACAGTGGAGCTATCTTTGGACAGCACACAAAATA < 41bp 1 0.132906658636836 1 0.109082490205765 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410334 chr15:64410335 synonymous SNV . 0 22 hm5C_associated_SNPs_34172 0 0 1 0 1 SNX1 chr15:64410316 3'AG 64410316 Downstream 20bp
chr6 131900261 131900261 1 + G A SKCM 131900277 + 131900257 131900297 41 ATGTGAAGGATTATGGGGACCTGCCCTTTGCTGACATCCCT ATGTAAAGGATTATGGGGACCTGCCCTTTGCTGACATCCCT < 41bp 1 0.357742351451543 1 0.087658017873764 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARG1 ENSG00000118520 CDS Human protein_coding chr6:131900277 chr6:131900261 synonymous SNV . 0 5 hm5C_associated_SNPs_34175 0 0 0 0 2 ARG1 chr6:131900227 3'AG 131900227 Downstream 35bp
chr6 131900261 131900261 1 + G A SKCM 131900277 + 131900257 131900297 41 ATGTGAAGGATTATGGGGACCTGCCCTTTGCTGACATCCCT ATGTAAAGGATTATGGGGACCTGCCCTTTGCTGACATCCCT < 41bp 1 0.357742351451543 1 0.087658017873764 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARG1 ENSG00000118520 CDS Human protein_coding chr6:131900277 chr6:131900261 synonymous SNV . 0 5 hm5C_associated_SNPs_34175 0 0 0 0 2 ARG1 chr6:131900251 3'AG 131900251 Downstream 11bp
chr7 142458415 142458415 1 + C T SKCM 142458409 + 142458389 142458429 41 TCCCATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATG TCCCATCTCCACTCCAGTTGCTGCCCTCTTTGATGATGATG < 41bp 1 0.0783982785095982 1 0.0783375203609467 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458409 chr7:142458415 nonsynonymous SNV 0.006 3 27 hm5C_associated_SNPs_34176 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 10bp
chr7 142458415 142458415 1 + C T SKCM 142458412 + 142458392 142458432 41 CATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACA CATCTCCACTCCAGTTGCTGCCCTCTTTGATGATGATGACA < 41bp 1 0.00807590755320398 1 0.114540219306946 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458412 chr7:142458415 nonsynonymous SNV 0.006 3 24 hm5C_associated_SNPs_34177 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 10bp
chr7 142458415 142458415 1 + C T SKCM 142458413 + 142458393 142458433 41 ATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAA ATCTCCACTCCAGTTGCTGCCCTCTTTGATGATGATGACAA < 41bp 1 0.0188338259624159 1 0.0740949511528015 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458413 chr7:142458415 nonsynonymous SNV 0.006 3 23 hm5C_associated_SNPs_34178 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 10bp
chr7 142458415 142458415 1 + C T SKCM 142458414 + 142458394 142458434 41 TCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAG TCTCCACTCCAGTTGCTGCCCTCTTTGATGATGATGACAAG < 41bp 1 0.0746828512336424 1 0.480388194322586 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458414 chr7:142458415 nonsynonymous SNV 0.006 3 22 hm5C_associated_SNPs_34179 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 10bp
chr7 142458415 142458415 1 + C T SKCM 142458416 + 142458396 142458436 41 TCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGAT TCCACTCCAGTTGCTGCCCTCTTTGATGATGATGACAAGAT < 41bp 1 0.0607068462024468 1 0.183123469352722 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458416 chr7:142458415 nonsynonymous SNV 0.006 3 20 hm5C_associated_SNPs_34180 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 10bp
chr7 142458415 142458415 1 + C T SKCM 142458431 + 142458411 142458451 41 GCCCCCTTTGATGATGATGACAAGATCGTTGGGGGCTACAA GCCCTCTTTGATGATGATGACAAGATCGTTGGGGGCTACAA < 41bp 1 0.68609322177926 1 0.426106035709381 experiment 0.62781355644148 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458431 chr7:142458415 nonsynonymous SNV 0.006 3 5 hm5C_associated_SNPs_34181 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 10bp
chr19 58757775 58757775 1 + G A SKCM 58757778 + 58757758 58757798 41 TGACACTGGAGACCTGGGAGCATATTGTCTCCCTGGGTAAG TGACACTGGAGACCTGGAAGCATATTGTCTCCCTGGGTAAG < 41bp 1 0.266051540708633 1 0.0914899706840515 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58757778 chr19:58757775 nonsynonymous SNV 0.013 0 18 hm5C_associated_SNPs_34182 0 0 1 0 1 ZNF544 chr19:58757793 5'GT 58757793 Upstream 19bp
chr12 54675959 54675959 1 + G A SKCM 54675973 + 54675953 54675993 41 ACCTAAGAGATTATTTTGAACAGTATGGAAAAATTGAAGTG ACCTAAAAGATTATTTTGAACAGTATGGAAAAATTGAAGTG < 41bp 1 0.611532862713796 1 0.225188553333282 experiment 0.776934274572408 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675973 chr12:54675959 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_34184 0 0 0 4 1 HNRNPA1 chr12:54675874 3'AG 54675874 Downstream 86bp
chr22 30038261 30038261 1 + C T SKCM 30038248 + 30038228 30038268 41 CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGTCGTCCAG < 41bp 1 0.670564613293675 1 0.535269141197205 experiment 0.658870773412651 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30038248 chr22:30038261 nonsynonymous SNV 0.468 4 34 hm5C_associated_SNPs_34185 0 0 1 0 2 NF2 chr22:30038191 3'AG 30038191 Downstream 71bp
chr22 30038261 30038261 1 + C T SKCM 30038248 + 30038228 30038268 41 CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGTCGTCCAG < 41bp 1 0.670564613293675 1 0.535269141197205 experiment 0.658870773412651 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30038248 chr22:30038261 nonsynonymous SNV 0.468 4 34 hm5C_associated_SNPs_34185 0 0 1 0 2 NF2 chr22:30038274 5'GT 30038274 Upstream 14bp
chr17 40716061 40716061 1 + C T SKCM 40716079 + 40716059 40716099 41 TCCTTGACTTTTGATGTCATCCCCCTGCTGGACCCCTATGG TCTTTGACTTTTGATGTCATCCCCCTGCTGGACCCCTATGG < 41bp 1 0.248117056315784 1 0.158555448055267 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COASY ENSG00000068120 CDS Human protein_coding chr17:40716079 chr17:40716061 synonymous SNV . 0 3 hm5C_associated_SNPs_34186 0 0 1 0 1 COASY chr17:40715979 3'AG 40715979 Downstream 83bp
chr2 119732122 119732122 1 + G A SKCM 119732128 + 119732108 119732148 41 CCCCAAGGCCCACCGGGAGTCAAGGGAGAGGCGGGTGAGTA CCCCAAGGCCCACCAGGAGTCAAGGGAGAGGCGGGTGAGTA < 41bp 1 0.794975961653031 1 0.843489766120911 experiment 0.410048076693938 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MARCO ENSG00000019169 CDS Human protein_coding chr2:119732128 chr2:119732122 synonymous SNV . 0 15 hm5C_associated_SNPs_34188 0 0 0 0 2 MARCO chr2:119732097 3'AG 119732097 Downstream 26bp
chr2 119732122 119732122 1 + G A SKCM 119732128 + 119732108 119732148 41 CCCCAAGGCCCACCGGGAGTCAAGGGAGAGGCGGGTGAGTA CCCCAAGGCCCACCAGGAGTCAAGGGAGAGGCGGGTGAGTA < 41bp 1 0.794975961653031 1 0.843489766120911 experiment 0.410048076693938 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MARCO ENSG00000019169 CDS Human protein_coding chr2:119732128 chr2:119732122 synonymous SNV . 0 15 hm5C_associated_SNPs_34188 0 0 0 0 2 MARCO chr2:119732141 5'GT 119732141 Upstream 20bp
chr17 78022434 78022434 1 + G A SKCM 78022426 + 78022406 78022446 41 CCCACCCCAGGGAAGGAGACCTGCCAGTGTTCCAGGACCAG CCCACCCCAGGGAAGGAGACCTGCCAGTATTCCAGGACCAG < 41bp 1 0.268080173256399 1 0.0818988978862762 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78022426 chr17:78022434 synonymous SNV . 0 29 hm5C_associated_SNPs_34189 0 0 1 0 1 CCDC40 chr17:78022382 3'AG 78022382 Downstream 53bp
chr17 78022435 78022435 1 + T A SKCM 78022426 + 78022406 78022446 41 CCCACCCCAGGGAAGGAGACCTGCCAGTGTTCCAGGACCAG CCCACCCCAGGGAAGGAGACCTGCCAGTGATCCAGGACCAG < 41bp 1 0.317790736950279 1 0.0662164688110352 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78022426 chr17:78022435 nonsynonymous SNV 0.002 0 30 hm5C_associated_SNPs_34190 0 0 1 0 1 CCDC40 chr17:78022382 3'AG 78022382 Downstream 54bp
chr17 7318294 7318294 1 + C T SKCM 7318290 + 7318270 7318310 41 GCCAGGGCTGTTCCAGAAGGCCATCGCCCAGAGTGGCACCG GCCAGGGCTGTTCCAGAAGGCCATTGCCCAGAGTGGCACCG < 41bp 1 0.0451218509197455 1 0.0901640653610229 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NLGN2 ENSG00000169992 CDS Human protein_coding chr17:7318290 chr17:7318294 synonymous SNV . 0 25 hm5C_associated_SNPs_34195 0 0 1 0 1 NLGN2 chr17:7318275 3'AG 7318275 Downstream 20bp
chr7 44802542 44802542 1 + C T SKCM 44802539 + 44802519 44802559 41 GTCCGCTCGGTGCTGCAGGGCCTCCTCAAAAAGCGCCTCCT GTCCGCTCGGTGCTGCAGGGCCTTCTCAAAAAGCGCCTCCT < 41bp 1 0.0136210870526485 1 0.00858837366104126 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44802539 chr7:44802542 synonymous SNV . 0 24 hm5C_associated_SNPs_34196 0 0 1 0 1 ZMIZ2 chr7:44802480 3'AG 44802480 Downstream 63bp
chr10 102822854 102822854 1 + G A SKCM 102822848 + 102822828 102822868 41 TCACTGTGGCACACCCGGGGCCCTGCGAATCGGGTACGCAT TCACTGTGGCACACCCGGGGCCCTGCAAATCGGGTACGCAT < 41bp 1 0.0794642319481155 1 0.0735681056976318 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102822848 chr10:102822854 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_34199 0 0 0 0 1 KAZALD1 chr10:102822860 5'GT 102822860 Upstream 7bp
chr10 102822854 102822854 1 + G A SKCM 102822849 + 102822829 102822869 41 CACTGTGGCACACCCGGGGCCCTGCGAATCGGGTACGCATG CACTGTGGCACACCCGGGGCCCTGCAAATCGGGTACGCATG < 41bp 1 0.0532570659841506 1 0.251025140285492 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102822849 chr10:102822854 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_34200 0 0 0 0 1 KAZALD1 chr10:102822860 5'GT 102822860 Upstream 7bp
chr10 102822854 102822854 1 + G A SKCM 102822850 + 102822830 102822870 41 ACTGTGGCACACCCGGGGCCCTGCGAATCGGGTACGCATGG ACTGTGGCACACCCGGGGCCCTGCAAATCGGGTACGCATGG < 41bp 1 0.703591996146933 1 0.4067243039608 experiment 0.592816007706134 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102822850 chr10:102822854 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_34201 0 0 0 0 1 KAZALD1 chr10:102822860 5'GT 102822860 Upstream 7bp
chrX 153628248 153628248 1 + A G SKCM 153628229 + 153628209 153628249 41 CATATCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCAT CATATCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCGT < 41bp 1 0.331668282701653 1 0.0462158024311066 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628229 chrX:153628248 nonsynonymous SNV 0.998 1 40 hm5C_associated_SNPs_34203 0 0 1 0 1 RPL10 chrX:153628282 5'GT 153628282 Upstream 35bp
chr19 49100066 49100066 1 + C T SKCM 49100079 + 49100059 49100099 41 CTGGGCTCCGTCGTGGCACACTCAACCTTCAGCGCCATGAA CTGGGCTTCGTCGTGGCACACTCAACCTTCAGCGCCATGAA < 41bp 1 0.794413406340166 1 0.640141069889069 experiment 0.411173187319667 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49100079 chr19:49100066 nonsynonymous SNV 0.040 4 8 hm5C_associated_SNPs_34204 0 0 1 0 1 SULT2B1 chr19:49099996 3'AG 49099996 Downstream 71bp
chr18 29171878 29171878 1 + C T SKCM 29171892 + 29171872 29171912 41 TCTCATCGTCTGCTCCTCCTCTGCCTTGCTGGACTGGTATT TCTCATTGTCTGCTCCTCCTCTGCCTTGCTGGACTGGTATT < 41bp 1 0.463797753876877 1 0.130227267742157 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTR ENSG00000118271 CDS Human protein_coding chr18:29171892 chr18:29171878 nonsynonymous SNV 0.364 3 7 hm5C_associated_SNPs_34205 0 0 1 0 1 TTR chr18:29171934 5'GT 29171934 Upstream 57bp
chr17 47119688 47119688 1 + A T SKCM 47119678 + 47119658 47119698 41 CATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGA CATCGAGAATTGTTGCAGGGCCGAGCAGGATATAATGAAGA < 41bp 1 0.106343619015262 1 0.21869096159935 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119678 chr17:47119688 nonsynonymous SNV 0.999 2 31 hm5C_associated_SNPs_34206 0 0 1 0 1 IGF2BP1 chr17:47119604 3'AG 47119604 Downstream 85bp
chr17 47119688 47119688 1 + A T SKCM 47119679 + 47119659 47119699 41 ATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGAA ATCGAGAATTGTTGCAGGGCCGAGCAGGATATAATGAAGAA < 41bp 1 0.317605005140102 1 0.250852823257446 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119679 chr17:47119688 nonsynonymous SNV 0.999 2 30 hm5C_associated_SNPs_34207 0 0 1 0 1 IGF2BP1 chr17:47119604 3'AG 47119604 Downstream 85bp
chr2 211502554 211502554 1 + C T SKCM 211502553 + 211502533 211502573 41 GGTTAAAGAAAAACATCCACCCTTGGGTTAAACAGGTAAAG GGTTAAAGAAAAACATCCACCTTTGGGTTAAACAGGTAAAG < 41bp 1 0.126750676675923 1 0.165977239608765 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211502553 chr2:211502554 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_34208 0 0 0 0 1 CPS1 chr2:211502567 5'GT 211502567 Upstream 14bp
chr7 150500746 150500746 1 + C T SKCM 150500743 + 150500723 150500763 41 CTGCTAACGCTGGCAGCTTTCTCCACAGCCATCGCTGCCCT CTGCTAACGCTGGCAGCTTTCTCTACAGCCATCGCTGCCCT < 41bp 1 0.778808330007985 1 0.967427015304565 experiment 0.44238333998403 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control TMEM176A ENSG00000002933 CDS Human protein_coding chr7:150500743 chr7:150500746 synonymous SNV . 0 24 hm5C_associated_SNPs_34209 0 0 0 0 1 TMEM176A chr7:150500708 3'AG 150500708 Downstream 39bp
chr19 13051368 13051368 1 + C T SKCM 13051369 + 13051349 13051389 41 CCCCAGGACTGGGACAAGCCCGAGCATATCCCTGACCCTGA CCCCAGGACTGGGACAAGCTCGAGCATATCCCTGACCCTGA < 41bp 1 0.721017076750943 1 0.813673317432404 experiment 0.557965846498114 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051369 chr19:13051368 nonsynonymous SNV 0.861 2 20 hm5C_associated_SNPs_34210 0 0 1 0 1 CALR chr19:13051355 3'AG 13051355 Downstream 14bp
chr19 13051368 13051368 1 + C T SKCM 13051384 + 13051364 13051404 41 AAGCCCGAGCATATCCCTGACCCTGATGCTAAGAAGCCCGA AAGCTCGAGCATATCCCTGACCCTGATGCTAAGAAGCCCGA < 41bp 1 0.140741952586478 1 0.0468275845050812 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051384 chr19:13051368 nonsynonymous SNV 0.861 2 5 hm5C_associated_SNPs_34211 0 0 1 0 1 CALR chr19:13051355 3'AG 13051355 Downstream 14bp
chr1 11779737 11779737 1 + C T SKCM 11779741 + 11779721 11779761 41 AACGGCGACCAGGGATCCTTCATCAACGTCTAGCGGCCCCG AACGGCGACCAGGGATTCTTCATCAACGTCTAGCGGCCCCG < 41bp 1 0.68331546258235 1 0.179371446371078 experiment 0.6333690748353 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11779741 chr1:11779737 nonsynonymous SNV 0.997 4 17 hm5C_associated_SNPs_34212 0 0 0 0 1 DRAXIN chr1:11779641 3'AG 11779641 Downstream 97bp
chr19 18285951 18285951 1 + C T SKCM 18285943 + 18285923 18285963 41 AAGCACTGTGCGGTGGCTGCCGAGCCTTCCTGATCCGGGAG AAGCACTGTGCGGTGGCTGCCGAGCCTTTCTGATCCGGGAG < 41bp 1 0.506377357637593 1 0.888911962509155 experiment 0.987245284724813 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFI30 ENSG00000216490 CDS Human protein_coding chr19:18285943 chr19:18285951 synonymous SNV . 0 29 hm5C_associated_SNPs_34213 0 0 1 0 1 IFI30 chr19:18286032 5'GT 18286032 Upstream 82bp
chr22 23615312 23615312 1 + G C SKCM 23615317 + 23615297 23615337 41 ACGAGGAGCACGCTGGTCCTCCATGTAAGTCACAGCGCCCC ACGAGGAGCACGCTGCTCCTCCATGTAAGTCACAGCGCCCC < 41bp 1 0.161550380908417 1 0.0787937641143799 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23615317 chr22:23615312 nonsynonymous SNV 0.866 3 16 hm5C_associated_SNPs_34214 0 0 1 0 2 BCR chr22:23615268 3'AG 23615268 Downstream 45bp
chr22 23615312 23615312 1 + G C SKCM 23615317 + 23615297 23615337 41 ACGAGGAGCACGCTGGTCCTCCATGTAAGTCACAGCGCCCC ACGAGGAGCACGCTGCTCCTCCATGTAAGTCACAGCGCCCC < 41bp 1 0.161550380908417 1 0.0787937641143799 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23615317 chr22:23615312 nonsynonymous SNV 0.866 3 16 hm5C_associated_SNPs_34214 0 0 1 0 2 BCR chr22:23615320 5'GT 23615320 Upstream 9bp
chr20 44522638 44522638 1 + C T SKCM 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGGCTTTGGTCTTTTCTCCAGACCCACTGCTGCTCTCAA < 41bp 1 0.156863241222108 1 0.933194637298584 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522638 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_34215 0 0 1 3 2 CTSA chr20:44522627 3'AG 44522627 Downstream 12bp
chr20 44522638 44522638 1 + C T SKCM 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGGCTTTGGTCTTTTCTCCAGACCCACTGCTGCTCTCAA < 41bp 1 0.156863241222108 1 0.933194637298584 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522638 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_34215 0 0 1 3 2 CTSA chr20:44522711 5'GT 44522711 Upstream 74bp
chr3 33183917 33183917 1 + T C SKCM 33183934 + 33183914 33183954 41 CTCTTGGAACTGGAGGAGACCAGCTAGCCCACAGCAACCAA CTCCTGGAACTGGAGGAGACCAGCTAGCCCACAGCAACCAA < 41bp 1 0.42263024449498 1 0.222663760185242 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CRTAP ENSG00000170275 CDS Human protein_coding chr3:33183934 chr3:33183917 synonymous SNV . 0 4 hm5C_associated_SNPs_34216 0 0 1 0 1 CRTAP chr3:33183887 3'AG 33183887 Downstream 31bp
chr2 167108299 167108299 1 - C T SKCM 167108313 - 167108293 167108333 41 AGAAGAAGCAGAGGCTGAACCTATGAATTCCGATGAGCCAG AGAAGAAGCAGAGGCTGAACCTATGAATTCCGATAAGCCAG < 41bp 1 0.378058099809279 1 0.515492916107178 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SCN9A ENSG00000169432 CDS Human protein_coding chr2:167108313 chr2:167108299 nonsynonymous SNV 0.984 2 35 hm5C_associated_SNPs_34217 0 0 1 0 2 SCN9A chr2:167108275 5'GT 167108275 Upstream 25bp
chr2 167108299 167108299 1 - C T SKCM 167108313 - 167108293 167108333 41 AGAAGAAGCAGAGGCTGAACCTATGAATTCCGATGAGCCAG AGAAGAAGCAGAGGCTGAACCTATGAATTCCGATAAGCCAG < 41bp 1 0.378058099809279 1 0.515492916107178 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SCN9A ENSG00000169432 CDS Human protein_coding chr2:167108313 chr2:167108299 nonsynonymous SNV 0.984 2 35 hm5C_associated_SNPs_34217 0 0 1 0 2 SCN9A chr2:167108395 3'AG 167108395 Downstream 97bp
chr17 28754470 28754470 1 + C T SKCM 28754477 + 28754457 28754497 41 TGAACCGAAATTTCCCAGACCAGTTTGTTCAGATCACAGAT TGAACCGAAATTTTCCAGACCAGTTTGTTCAGATCACAGAT < 41bp 1 0.103070606498483 1 0.0776218175888062 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28754477 chr17:28754470 synonymous SNV . 0 14 hm5C_associated_SNPs_34218 0 0 0 0 1 CPD chr17:28754409 3'AG 28754409 Downstream 62bp
chr2 71795334 71795334 1 + G A SKCM 71795352 + 71795332 71795372 41 GGGAACTGGGGCACAACGGGCCTCACCTACCCCAAGTTTTC GGAAACTGGGGCACAACGGGCCTCACCTACCCCAAGTTTTC < 41bp 1 0.109106537222355 1 0.0713644027709961 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71795352 chr2:71795334 synonymous SNV . 0 3 hm5C_associated_SNPs_34219 0 0 0 0 1 DYSF chr2:71795302 3'AG 71795302 Downstream 33bp
chr17 64685121 64685121 1 + G A SKCM 64685113 + 64685093 64685133 41 AGGTGAGTACTACAACGTACCCATTCCGGAAGGGGACGAGG AGGTGAGTACTACAACGTACCCATTCCGAAAGGGGACGAGG < 41bp 1 0.0192427115009574 1 0.0210367143154144 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64685113 chr17:64685121 nonsynonymous SNV 0.852 1 29 hm5C_associated_SNPs_34220 0 0 1 0 2 PRKCA chr17:64685069 3'AG 64685069 Downstream 53bp
chr17 64685121 64685121 1 + G A SKCM 64685113 + 64685093 64685133 41 AGGTGAGTACTACAACGTACCCATTCCGGAAGGGGACGAGG AGGTGAGTACTACAACGTACCCATTCCGAAAGGGGACGAGG < 41bp 1 0.0192427115009574 1 0.0210367143154144 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64685113 chr17:64685121 nonsynonymous SNV 0.852 1 29 hm5C_associated_SNPs_34220 0 0 1 0 2 PRKCA chr17:64685165 5'GT 64685165 Upstream 45bp
chr20 44522642 44522642 1 + C T SKCM 44522640 + 44522620 44522660 41 CCTACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCT CCTACAGGCTTTGGTCTTCTCTTCAGACCCACTGCTGCTCT < 41bp 1 0.742657586300157 1 0.848130941390991 experiment 0.514684827399686 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522640 chr20:44522642 synonymous SNV . 0 23 hm5C_associated_SNPs_34221 0 0 1 7 2 CTSA chr20:44522627 3'AG 44522627 Downstream 16bp
chr20 44522642 44522642 1 + C T SKCM 44522640 + 44522620 44522660 41 CCTACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCT CCTACAGGCTTTGGTCTTCTCTTCAGACCCACTGCTGCTCT < 41bp 1 0.742657586300157 1 0.848130941390991 experiment 0.514684827399686 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522640 chr20:44522642 synonymous SNV . 0 23 hm5C_associated_SNPs_34221 0 0 1 7 2 CTSA chr20:44522711 5'GT 44522711 Upstream 70bp
chr20 44522642 44522642 1 + C T SKCM 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGGCTTTGGTCTTCTCTTCAGACCCACTGCTGCTCTCAA < 41bp 1 0.184396073043789 1 0.918181657791138 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522642 synonymous SNV . 0 20 hm5C_associated_SNPs_34222 0 0 1 7 2 CTSA chr20:44522627 3'AG 44522627 Downstream 16bp
chr20 44522642 44522642 1 + C T SKCM 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGGCTTTGGTCTTCTCTTCAGACCCACTGCTGCTCTCAA < 41bp 1 0.184396073043789 1 0.918181657791138 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522642 synonymous SNV . 0 20 hm5C_associated_SNPs_34222 0 0 1 7 2 CTSA chr20:44522711 5'GT 44522711 Upstream 70bp
chr19 3527704 3527704 1 + C T SKCM 3527693 + 3527673 3527713 41 CCAAGATCCCCTTCAAGGTGCTGGACGCGCCCGAGCTGCAG CCAAGATCCCCTTCAAGGTGCTGGACGCGCCTGAGCTGCAG < 41bp 1 0.760516869171492 1 0.286719024181366 experiment 0.478966261657016 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3527693 chr19:3527704 synonymous SNV . 0 32 hm5C_associated_SNPs_34223 0 0 0 0 1 FZR1 chr19:3527629 3'AG 3527629 Downstream 76bp
chr19 3527703 3527703 1 + C T SKCM 3527693 + 3527673 3527713 41 CCAAGATCCCCTTCAAGGTGCTGGACGCGCCCGAGCTGCAG CCAAGATCCCCTTCAAGGTGCTGGACGCGCTCGAGCTGCAG < 41bp 1 0.680150242514262 1 0.240256696939468 experiment 0.639699514971475 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3527693 chr19:3527703 nonsynonymous SNV 0.171 3 31 hm5C_associated_SNPs_34224 0 0 0 0 1 FZR1 chr19:3527629 3'AG 3527629 Downstream 75bp
chr16 29848075 29848075 1 + C T SKCM 29848064 + 29848044 29848084 41 CAGCCCTGCACCTCCGGGCTCGGCGGAACTTCCGGGACTTC CAGCCCTGCACCTCCGGGCTCGGCGGAACTTTCGGGACTTC < 41bp 1 0.728818698930901 1 0.626737594604492 experiment 0.542362602138199 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29848064 chr16:29848075 nonsynonymous SNV . 0 32 hm5C_associated_SNPs_34226 0 0 1 0 1 MVP chr16:29848043 3'AG 29848043 Downstream 33bp
chrX 107814676 107814676 1 + C T SKCM 107814691 + 107814671 107814711 41 GTTTTCCTGGTTTACAGGGTCCTCCAGTAAGTTATAAAATT GTTTTTCTGGTTTACAGGGTCCTCCAGTAAGTTATAAAATT < 41bp 1 0.00975368015236911 1 0.0659113526344299 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107814691 chrX:107814676 nonsynonymous SNV 0.996 2 6 hm5C_associated_SNPs_34228 0 0 1 0 2 COL4A5 chrX:107814643 3'AG 107814643 Downstream 34bp
chrX 107814676 107814676 1 + C T SKCM 107814691 + 107814671 107814711 41 GTTTTCCTGGTTTACAGGGTCCTCCAGTAAGTTATAAAATT GTTTTTCTGGTTTACAGGGTCCTCCAGTAAGTTATAAAATT < 41bp 1 0.00975368015236911 1 0.0659113526344299 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107814691 chrX:107814676 nonsynonymous SNV 0.996 2 6 hm5C_associated_SNPs_34228 0 0 1 0 2 COL4A5 chrX:107814696 5'GT 107814696 Upstream 21bp
chr18 56402458 56402458 1 + A T SKCM 56402451 + 56402431 56402471 41 AAGGTGTCAAGGAGCAGAAGCTTTTGAAATCCAGCATTCTG AAGGTGTCAAGGAGCAGAAGCTTTTGATATCCAGCATTCTG < 41bp 1 0.037439715433586 1 0.0279566943645477 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MALT1 ENSG00000172175 CDS Human protein_coding chr18:56402451 chr18:56402458 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_34235 0 0 1 0 1 MALT1 chr18:56402434 3'AG 56402434 Downstream 25bp
chr4 79420928 79420928 1 + C T SKCM 79420912 + 79420892 79420932 41 GAAGAAGCTGCATACCAAGTCCGGGAACCCGCAGGCCCAGA GAAGAAGCTGCATACCAAGTCCGGGAACCCGCAGGCTCAGA < 41bp 1 0.179110323057477 1 0.59613174200058 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79420912 chr4:79420928 nonsynonymous SNV 0.082 3 37 hm5C_associated_SNPs_34236 0 0 1 0 1 FRAS1 chr4:79420875 3'AG 79420875 Downstream 54bp
chr5 137754723 137754723 1 + C T SKCM 137754741 + 137754721 137754761 41 CTCCAGAGCCGGACCATGTTCCCAAAGCCGACAGCACTGAC CTTCAGAGCCGGACCATGTTCCCAAAGCCGACAGCACTGAC < 41bp 1 0.505899716921091 1 0.207416743040085 experiment 0.988200566157818 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KDM3B ENSG00000120733 CDS Human protein_coding chr5:137754741 chr5:137754723 nonsynonymous SNV 0.829 0 3 hm5C_associated_SNPs_34238 0 0 1 0 1 KDM3B chr5:137754642 3'AG 137754642 Downstream 82bp
chr6 31918679 31918679 1 + C T SKCM 31918695 + 31918675 31918715 41 AACTCGAGCTTTGAGGCTTCCTCCAACTACCACTTGCCAGC AACTTGAGCTTTGAGGCTTCCTCCAACTACCACTTGCCAGC < 41bp 1 0.738878898256215 1 0.881104648113251 experiment 0.522242203487569 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control CFB ENSG00000243649;ENSG00000244255 CDS Human other chr6:31918695 chr6:31918679 stopgain 0.996 0 5 hm5C_associated_SNPs_34239 0 0 1 0 2 CFB chr6:31918645 3'AG 31918645 Downstream 35bp
chr6 31918679 31918679 1 + C T SKCM 31918695 + 31918675 31918715 41 AACTCGAGCTTTGAGGCTTCCTCCAACTACCACTTGCCAGC AACTTGAGCTTTGAGGCTTCCTCCAACTACCACTTGCCAGC < 41bp 1 0.738878898256215 1 0.881104648113251 experiment 0.522242203487569 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control CFB ENSG00000243649;ENSG00000244255 CDS Human other chr6:31918695 chr6:31918679 stopgain 0.996 0 5 hm5C_associated_SNPs_34239 0 0 1 0 2 CFB chr6:31918721 5'GT 31918721 Upstream 43bp
chr4 79396720 79396720 1 + C T SKCM 79396708 + 79396688 79396728 41 AGGCACCGCCAGCTCCAGCTCCAGGGTCAGCTCCCAACCTG AGGCACCGCCAGCTCCAGCTCCAGGGTCAGCTTCCAACCTG < 41bp 1 0.394177140687096 1 0.751869261264801 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79396708 chr4:79396720 nonsynonymous SNV 0.821 1 33 hm5C_associated_SNPs_34240 0 0 0 0 1 FRAS1 chr4:79396760 5'GT 79396760 Upstream 41bp
chr17 7479910 7479910 1 + C T SKCM 7479892 + 7479872 7479912 41 TACATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAA TACATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACTAA < 41bp 1 0.644706955283011 1 0.196517735719681 experiment 0.710586089433977 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479892 chr17:7479910 stopgain . 0 39 hm5C_associated_SNPs_34241 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 69bp
chr17 7479910 7479910 1 + C T SKCM 7479895 + 7479875 7479915 41 ATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAACGT ATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACTAACGT < 41bp 1 0.496356270885067 1 0.368875175714493 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479895 chr17:7479910 stopgain . 0 36 hm5C_associated_SNPs_34242 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 69bp
chr17 7479910 7479910 1 + C T SKCM 7479907 + 7479887 7479927 41 TGTCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGT TGTCACGCCTGTATCGGGGGCACTAACGTGCGTGCTGAGGT < 41bp 1 0.291883821386632 1 0.151784211397171 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479907 chr17:7479910 stopgain . 0 24 hm5C_associated_SNPs_34243 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 69bp
chr17 7479910 7479910 1 + C T SKCM 7479909 + 7479889 7479929 41 TCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGC TCACGCCTGTATCGGGGGCACTAACGTGCGTGCTGAGGTGC < 41bp 1 0.29352843519207 1 0.198339641094208 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479909 chr17:7479910 stopgain . 0 22 hm5C_associated_SNPs_34244 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 69bp
chr17 7479909 7479909 1 + C T SKCM 7479892 + 7479872 7479912 41 TACATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAA TACATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCATCAA < 41bp 1 0.642938897808623 1 0.0806262791156769 experiment 0.714122204382754 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479892 chr17:7479909 nonsynonymous SNV 0.988 2 38 hm5C_associated_SNPs_34245 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 68bp
chr17 7479909 7479909 1 + C T SKCM 7479895 + 7479875 7479915 41 ATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAACGT ATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCATCAACGT < 41bp 1 0.53956848167265 1 0.284408986568451 experiment 0.920863036654701 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479895 chr17:7479909 nonsynonymous SNV 0.988 2 35 hm5C_associated_SNPs_34246 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 68bp
chr17 7479909 7479909 1 + C T SKCM 7479907 + 7479887 7479927 41 TGTCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGT TGTCACGCCTGTATCGGGGGCATCAACGTGCGTGCTGAGGT < 41bp 1 0.244258546663927 1 0.0453645884990692 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479907 chr17:7479909 nonsynonymous SNV 0.988 2 23 hm5C_associated_SNPs_34247 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 68bp
chr17 7479909 7479909 1 + C T SKCM 7479910 + 7479890 7479930 41 CACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGCA CACGCCTGTATCGGGGGCATCAACGTGCGTGCTGAGGTGCA < 41bp 1 0.511412458614704 1 0.519191443920135 experiment 0.977175082770593 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479910 chr17:7479909 nonsynonymous SNV 0.988 2 20 hm5C_associated_SNPs_34248 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 68bp
chr4 38937390 38937390 1 + G A SKCM 38937401 + 38937381 38937421 41 GAAGTTTACGAATTCTTTAACCACTGTTGGGGTAAGATTAC GAAGTTTACAAATTCTTTAACCACTGTTGGGGTAAGATTAC < 41bp 1 0.0810049143052382 1 0.0774803459644318 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38937401 chr4:38937390 synonymous SNV . 0 10 hm5C_associated_SNPs_34249 0 0 1 0 2 FAM114A1 chr4:38937339 3'AG 38937339 Downstream 52bp
chr4 38937390 38937390 1 + G A SKCM 38937401 + 38937381 38937421 41 GAAGTTTACGAATTCTTTAACCACTGTTGGGGTAAGATTAC GAAGTTTACAAATTCTTTAACCACTGTTGGGGTAAGATTAC < 41bp 1 0.0810049143052382 1 0.0774803459644318 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38937401 chr4:38937390 synonymous SNV . 0 10 hm5C_associated_SNPs_34249 0 0 1 0 2 FAM114A1 chr4:38937411 5'GT 38937411 Upstream 22bp
chr4 38937390 38937390 1 + G A SKCM 38937402 + 38937382 38937422 41 AAGTTTACGAATTCTTTAACCACTGTTGGGGTAAGATTACA AAGTTTACAAATTCTTTAACCACTGTTGGGGTAAGATTACA < 41bp 1 0.190383930177714 1 0.119839519262314 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38937402 chr4:38937390 synonymous SNV . 0 9 hm5C_associated_SNPs_34250 0 0 1 0 2 FAM114A1 chr4:38937339 3'AG 38937339 Downstream 52bp
chr4 38937390 38937390 1 + G A SKCM 38937402 + 38937382 38937422 41 AAGTTTACGAATTCTTTAACCACTGTTGGGGTAAGATTACA AAGTTTACAAATTCTTTAACCACTGTTGGGGTAAGATTACA < 41bp 1 0.190383930177714 1 0.119839519262314 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38937402 chr4:38937390 synonymous SNV . 0 9 hm5C_associated_SNPs_34250 0 0 1 0 2 FAM114A1 chr4:38937411 5'GT 38937411 Upstream 22bp
chr2 211525356 211525356 1 + C T SKCM 211525357 + 211525337 211525377 41 ATTGGACCATCCCATAATTCCTGCTGACTATGTTGCAATTA ATTGGACCATCCCATAATTTCTGCTGACTATGTTGCAATTA < 41bp 1 0.368748172840903 1 0.148029386997223 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211525357 chr2:211525356 nonsynonymous SNV 0.999 2 20 hm5C_associated_SNPs_34254 0 0 1 0 1 CPS1 chr2:211525379 5'GT 211525379 Upstream 24bp
chr1 78325048 78325048 1 + C T SKCM 78325041 + 78325021 78325061 41 GGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA GGAGACAGTGATTTTCTTGCCAAACTTTACTGTATTCGACA < 41bp 1 0.20067652229127 1 0.240795731544495 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78325041 chr1:78325048 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_34255 0 0 0 0 2 MIGA1 chr1:78324999 3'AG 78324999 Downstream 50bp
chr1 78325048 78325048 1 + C T SKCM 78325041 + 78325021 78325061 41 GGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA GGAGACAGTGATTTTCTTGCCAAACTTTACTGTATTCGACA < 41bp 1 0.20067652229127 1 0.240795731544495 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78325041 chr1:78325048 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_34255 0 0 0 0 2 MIGA1 chr1:78325071 5'GT 78325071 Upstream 24bp
chr6 28329233 28329233 1 + C T SKCM 28329230 + 28329210 28329250 41 AGCATGAATCTGTGGGATCCCAGCCTTTACAAGATAGAGGT AGCATGAATCTGTGGGATCCCAGTCTTTACAAGATAGAGGT < 41bp 1 0.281871625473161 1 0.217539101839066 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28329230 chr6:28329233 nonsynonymous SNV 0.012 0 24 hm5C_associated_SNPs_34256 0 0 0 0 1 ZKSCAN3 chr6:28329248 5'GT 28329248 Upstream 16bp
chr1 43296154 43296154 1 + C T SKCM 43296173 + 43296153 43296193 41 TCTGGCTGCCTCATCCCTCTCGTCTTCCTCCGGCTGTCTGT TTTGGCTGCCTCATCCCTCTCGTCTTCCTCCGGCTGTCTGT < 41bp 1 0.285580013961867 1 0.0727404952049255 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ERMAP ENSG00000164010 CDS Human protein_coding chr1:43296173 chr1:43296154 nonsynonymous SNV 0.004 2 2 hm5C_associated_SNPs_34258 0 0 1 0 2 ERMAP chr1:43296115 3'AG 43296115 Downstream 40bp
chr1 43296154 43296154 1 + C T SKCM 43296173 + 43296153 43296193 41 TCTGGCTGCCTCATCCCTCTCGTCTTCCTCCGGCTGTCTGT TTTGGCTGCCTCATCCCTCTCGTCTTCCTCCGGCTGTCTGT < 41bp 1 0.285580013961867 1 0.0727404952049255 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ERMAP ENSG00000164010 CDS Human protein_coding chr1:43296173 chr1:43296154 nonsynonymous SNV 0.004 2 2 hm5C_associated_SNPs_34258 0 0 1 0 2 ERMAP chr1:43296204 5'GT 43296204 Upstream 51bp
chr14 105936402 105936402 1 + G A SKCM 105936408 + 105936388 105936428 41 ACCTCTGCCCACAGGAAGATCCGCAAGCTGCTCTCATCCTC ACCTCTGCCCACAGAAAGATCCGCAAGCTGCTCTCATCCTC < 41bp 1 0.655791956993421 1 0.204655975103378 experiment 0.688416086013157 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936408 chr14:105936402 synonymous SNV . 0 15 hm5C_associated_SNPs_34259 0 0 1 0 1 MTA1 chr14:105936402 3'AG 105936402 Downstream 1bp
chr1 10195157 10195157 1 + C T SKCM 10195142 + 10195122 10195162 41 TCAAGTTAGAAACAGTTGATCCCACGTATATTTTTCACCCA TCAAGTTAGAAACAGTTGATCCCACGTATATTTTTTACCCA < 41bp 1 0.0848947970032103 1 0.239847153425217 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10195142 chr1:10195157 nonsynonymous SNV 0.999 3 36 hm5C_associated_SNPs_34261 0 0 1 0 1 UBE4B chr1:10195244 5'GT 10195244 Upstream 88bp
chr19 10200677 10200677 1 + C T SKCM 10200684 + 10200664 10200704 41 CAGTTTGCCTGCTCCTCCTGCGACCACGTCTGGTGGCGCCG CAGTTTGCCTGCTTCTCCTGCGACCACGTCTGGTGGCGCCG < 41bp 1 0.226316636366508 1 0.439065128564835 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10200684 chr19:10200677 nonsynonymous SNV 0.999 1 14 hm5C_associated_SNPs_34262 0 0 1 0 1 C19orf66 chr19:10200723 5'GT 10200723 Upstream 47bp
chr19 10200677 10200677 1 + C T SKCM 10200688 + 10200668 10200708 41 TTGCCTGCTCCTCCTGCGACCACGTCTGGTGGCGCCGCGTG TTGCCTGCTTCTCCTGCGACCACGTCTGGTGGCGCCGCGTG < 41bp 1 0.611695081404992 1 0.39609158039093 experiment 0.776609837190016 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10200688 chr19:10200677 nonsynonymous SNV 0.999 1 10 hm5C_associated_SNPs_34263 0 0 1 0 1 C19orf66 chr19:10200723 5'GT 10200723 Upstream 47bp
chr12 57911162 57911162 1 - A C SKCM 57911153 - 57911133 57911173 41 TGCCTTTCTCCTTCGGGACACTGTCCAGCTGGGAGCTGGAA TGCCTTTCTCCGTCGGGACACTGTCCAGCTGGGAGCTGGAA < 41bp 1 0.277968592048847 1 0.0977661311626434 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDIT3 ENSG00000175197 CDS Human protein_coding chr12:57911153 chr12:57911162 nonsynonymous SNV 0.997 1 12 hm5C_associated_SNPs_34264 0 0 1 0 2 DDIT3 chr12:57911207 3'AG 57911207 Downstream 46bp
chr12 57911162 57911162 1 - A C SKCM 57911153 - 57911133 57911173 41 TGCCTTTCTCCTTCGGGACACTGTCCAGCTGGGAGCTGGAA TGCCTTTCTCCGTCGGGACACTGTCCAGCTGGGAGCTGGAA < 41bp 1 0.277968592048847 1 0.0977661311626434 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDIT3 ENSG00000175197 CDS Human protein_coding chr12:57911153 chr12:57911162 nonsynonymous SNV 0.997 1 12 hm5C_associated_SNPs_34264 0 0 1 0 2 DDIT3 chr12:57911221 3'AG 57911221 Downstream 60bp
chr19 50880885 50880885 1 + C T SKCM 50880899 + 50880879 50880919 41 CGAGTTCCCTGGATACCCCCCTGCCTGGTGAGTGACTCTCT CGAGTTTCCTGGATACCCCCCTGCCTGGTGAGTGACTCTCT < 41bp 1 0.167020938273548 1 0.490807205438614 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50880899 chr19:50880885 nonsynonymous SNV 0.397 3 7 hm5C_associated_SNPs_34265 0 0 1 0 2 NR1H2 chr19:50880844 3'AG 50880844 Downstream 42bp
chr19 50880885 50880885 1 + C T SKCM 50880899 + 50880879 50880919 41 CGAGTTCCCTGGATACCCCCCTGCCTGGTGAGTGACTCTCT CGAGTTTCCTGGATACCCCCCTGCCTGGTGAGTGACTCTCT < 41bp 1 0.167020938273548 1 0.490807205438614 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50880899 chr19:50880885 nonsynonymous SNV 0.397 3 7 hm5C_associated_SNPs_34265 0 0 1 0 2 NR1H2 chr19:50880905 5'GT 50880905 Upstream 21bp
chr5 138651821 138651821 1 + C T SKCM 138651827 + 138651807 138651847 41 AGGAATTCTGGGACCTCCACCTCCCTCATTTCATCTTGGGG AGGAATTCTGGGACTTCCACCTCCCTCATTTCATCTTGGGG < 41bp 1 0.284535003150572 1 0.570030152797699 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MATR3 ENSG00000015479 CDS Human protein_coding chr5:138651827 chr5:138651821 nonsynonymous SNV 0.992 3 15 hm5C_associated_SNPs_34266 0 0 1 0 2 MATR3 chr5:138651765 3'AG 138651765 Downstream 57bp
chr5 138651821 138651821 1 + C T SKCM 138651827 + 138651807 138651847 41 AGGAATTCTGGGACCTCCACCTCCCTCATTTCATCTTGGGG AGGAATTCTGGGACTTCCACCTCCCTCATTTCATCTTGGGG < 41bp 1 0.284535003150572 1 0.570030152797699 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MATR3 ENSG00000015479 CDS Human protein_coding chr5:138651827 chr5:138651821 nonsynonymous SNV 0.992 3 15 hm5C_associated_SNPs_34266 0 0 1 0 2 MATR3 chr5:138651877 5'GT 138651877 Upstream 57bp
chr3 184040702 184040702 1 + C T SKCM 184040721 + 184040701 184040741 41 CCAGAGGGATTGCCACATATCAGTGACGTGGTGCTGGACAA CTAGAGGGATTGCCACATATCAGTGACGTGGTGCTGGACAA < 41bp 1 0.649307335195041 1 0.389752596616745 experiment 0.701385329609918 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184040721 chr3:184040702 nonsynonymous SNV 0.984 3 2 hm5C_associated_SNPs_34268 0 0 1 0 2 EIF4G1 chr3:184040609 3'AG 184040609 Downstream 94bp
chr3 184040702 184040702 1 + C T SKCM 184040721 + 184040701 184040741 41 CCAGAGGGATTGCCACATATCAGTGACGTGGTGCTGGACAA CTAGAGGGATTGCCACATATCAGTGACGTGGTGCTGGACAA < 41bp 1 0.649307335195041 1 0.389752596616745 experiment 0.701385329609918 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184040721 chr3:184040702 nonsynonymous SNV 0.984 3 2 hm5C_associated_SNPs_34268 0 0 1 0 2 EIF4G1 chr3:184040742 5'GT 184040742 Upstream 41bp
chr1 22333991 22333991 1 + A G SKCM 22333990 + 22333970 22334010 41 ATGGTGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGT ATGGTGTGTGCTGGAGGGTACGTCCGCTCCGGCTGCAACGT < 41bp 1 0.254468389536572 1 0.0983447134494781 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333990 chr1:22333991 nonsynonymous SNV 0.004 1 22 hm5C_associated_SNPs_34269 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 18bp
chr1 22333991 22333991 1 + A G SKCM 22333993 + 22333973 22334013 41 GTGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAG GTGTGTGCTGGAGGGTACGTCCGCTCCGGCTGCAACGTGAG < 41bp 1 0.359173505422067 1 0.148687422275543 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333993 chr1:22333991 nonsynonymous SNV 0.004 1 19 hm5C_associated_SNPs_34270 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 18bp
chr1 22333991 22333991 1 + A G SKCM 22333994 + 22333974 22334014 41 TGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAGT TGTGTGCTGGAGGGTACGTCCGCTCCGGCTGCAACGTGAGT < 41bp 1 0.239635006458401 1 0.352845340967178 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333994 chr1:22333991 nonsynonymous SNV 0.004 1 18 hm5C_associated_SNPs_34271 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 18bp
chr1 22333991 22333991 1 + A G SKCM 22333998 + 22333978 22334018 41 TGCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAGTCAGC TGCTGGAGGGTACGTCCGCTCCGGCTGCAACGTGAGTCAGC < 41bp 1 0.457978903064207 1 0.382031202316284 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333998 chr1:22333991 nonsynonymous SNV 0.004 1 14 hm5C_associated_SNPs_34272 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 18bp
chr1 22333991 22333991 1 + A G SKCM 22333999 + 22333979 22334019 41 GCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAGTCAGCT GCTGGAGGGTACGTCCGCTCCGGCTGCAACGTGAGTCAGCT < 41bp 1 0.585828031041376 1 0.339923024177551 experiment 0.828343937917247 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333999 chr1:22333991 nonsynonymous SNV 0.004 1 13 hm5C_associated_SNPs_34273 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 18bp
chr1 22333991 22333991 1 + A G SKCM 22334002 + 22333982 22334022 41 GGAGGGTACATCCGCTCCGGCTGCAACGTGAGTCAGCTCTT GGAGGGTACGTCCGCTCCGGCTGCAACGTGAGTCAGCTCTT < 41bp 1 0.711430392000101 1 0.421325087547302 experiment 0.577139215999798 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22334002 chr1:22333991 nonsynonymous SNV 0.004 1 10 hm5C_associated_SNPs_34274 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 18bp
chr1 22333991 22333991 1 + A G SKCM 22334005 + 22333985 22334025 41 GGGTACATCCGCTCCGGCTGCAACGTGAGTCAGCTCTTACC GGGTACGTCCGCTCCGGCTGCAACGTGAGTCAGCTCTTACC < 41bp 1 0.499645847887679 1 0.3107068836689 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22334005 chr1:22333991 nonsynonymous SNV 0.004 1 7 hm5C_associated_SNPs_34275 0 0 0 0 1 CELA3A chr1:22334008 5'GT 22334008 Upstream 18bp
chr16 20926983 20926983 1 + G A SKCM 20926976 + 20926956 20926996 41 TCAGGGCAGATGGAAGACACCATCAAAGAAAAACAGTACAT TCAGGGCAGATGGAAGACACCATCAAAAAAAAACAGTACAT < 41bp 1 0.662352556771074 1 0.157408475875854 experiment 0.675294886457852 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LYRM1 ENSG00000102897 CDS Human protein_coding chr16:20926976 chr16:20926983 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_34280 0 0 0 0 1 LYRM1 chr16:20927036 5'GT 20927036 Upstream 54bp
chr5 71648498 71648498 1 + G A SKCM 71648516 + 71648496 71648536 41 TGGAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA TGAAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA < 41bp 1 0.44396315631925 1 0.636243164539337 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71648516 chr5:71648498 nonsynonymous SNV 0.763 0 3 hm5C_associated_SNPs_34281 0 0 0 0 2 PTCD2 chr5:71648468 3'AG 71648468 Downstream 31bp
chr5 71648498 71648498 1 + G A SKCM 71648516 + 71648496 71648536 41 TGGAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA TGAAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA < 41bp 1 0.44396315631925 1 0.636243164539337 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71648516 chr5:71648498 nonsynonymous SNV 0.763 0 3 hm5C_associated_SNPs_34281 0 0 0 0 2 PTCD2 chr5:71648581 5'GT 71648581 Upstream 84bp
chr19 41807533 41807533 1 + C G SKCM 41807534 + 41807514 41807554 41 TTTGTCCCACTGACGAGGACCTAAAAGACCGAACAATAAAG TTTGTCCCACTGACGAGGAGCTAAAAGACCGAACAATAAAG < 41bp 1 0.300706778370096 1 0.313323795795441 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41807534 chr19:41807533 nonsynonymous SNV 0.997 1 20 hm5C_associated_SNPs_34284 0 0 1 0 2 HNRNPUL1 chr19:41807441 3'AG 41807441 Downstream 93bp
chr19 41807533 41807533 1 + C G SKCM 41807534 + 41807514 41807554 41 TTTGTCCCACTGACGAGGACCTAAAAGACCGAACAATAAAG TTTGTCCCACTGACGAGGAGCTAAAAGACCGAACAATAAAG < 41bp 1 0.300706778370096 1 0.313323795795441 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41807534 chr19:41807533 nonsynonymous SNV 0.997 1 20 hm5C_associated_SNPs_34284 0 0 1 0 2 HNRNPUL1 chr19:41807609 5'GT 41807609 Upstream 77bp
chr5 176710809 176710809 1 + C T SKCM 176710791 + 176710771 176710811 41 TTCTTTTGGAATTCTAGGACCGAATCATTGATGCTGGTCCC TTCTTTTGGAATTCTAGGACCGAATCATTGATGCTGGTTCC < 41bp 1 0.0688941347459917 1 0.281943678855896 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176710791 chr5:176710809 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_34287 0 0 1 0 1 NSD1 chr5:176710788 3'AG 176710788 Downstream 22bp
chr16 67208826 67208826 1 + G A SKCM 67208843 + 67208823 67208863 41 TTCGAGGAAAGGGACGAGTCCGAAGGTGTGAGTCCGCCCAA TTCAAGGAAAGGGACGAGTCCGAAGGTGTGAGTCCGCCCAA < 41bp 1 0.757426946306969 1 0.511315643787384 experiment 0.485146107386063 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NOL3 ENSG00000140939 CDS Human protein_coding chr16:67208843 chr16:67208826 nonsynonymous SNV 0.005 1 4 hm5C_associated_SNPs_34288 0 0 0 0 1 NOL3 chr16:67208847 5'GT 67208847 Upstream 22bp
chr11 209910 209910 1 + C T SKCM 209927 + 209907 209947 41 GCTCCTTCCTTCCCAAGAGACTGAGCGGGCCATGGAGATCC GCTTCTTCCTTCCCAAGAGACTGAGCGGGCCATGGAGATCC < 41bp 1 0.590738986180135 1 0.143212020397186 experiment 0.818522027639731 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:209927 chr11:209910 synonymous SNV . 0 4 hm5C_associated_SNPs_34290 0 0 0 0 1 RIC8A chr11:210000 5'GT 210000 Upstream 91bp
chr12 57599031 57599031 1 + C T SKCM 57599013 + 57598993 57599033 41 GACTGCGGGGACGGCTCTGACGAGGAGGACTGCAGCATCGG GACTGCGGGGACGGCTCTGACGAGGAGGACTGCAGCATTGG < 41bp 1 0.478077722697799 1 0.935868740081787 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599013 chr12:57599031 synonymous SNV . 0 39 hm5C_associated_SNPs_34291 0 0 1 0 1 LRP1 chr12:57599032 5'GT 57599032 Upstream 2bp
chr11 73638353 73638353 1 + C T SKCM 73638335 + 73638315 73638355 41 ATTCTTGTGTTTTAGGTAGCCACATGGGAGAAGCAGATCTA ATTCTTGTGTTTTAGGTAGCCACATGGGAGAAGCAGATTTA < 41bp 1 0.587250703190264 1 0.818471074104309 experiment 0.825498593619472 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PAAF1 ENSG00000175575 CDS Human protein_coding chr11:73638335 chr11:73638353 synonymous SNV . 0 39 hm5C_associated_SNPs_34292 0 0 1 0 1 PAAF1 chr11:73638330 3'AG 73638330 Downstream 24bp
chr3 62189579 62189579 1 + G A SKCM 62189585 + 62189565 62189605 41 AGCCTATGTCCCGCGGGGACCGATTTTCTGAAGACAGCAGA AGCCTATGTCCCGCAGGGACCGATTTTCTGAAGACAGCAGA < 41bp 1 0.105616366573342 1 0.0945262908935547 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:62189585 chr3:62189579 nonsynonymous SNV 0.932 1 15 hm5C_associated_SNPs_34294 0 0 0 0 1 PTPRG chr3:62189624 5'GT 62189624 Upstream 46bp
chr3 51737762 51737762 1 + G A SKCM 51737759 + 51737739 51737779 41 GGAGCTGACACAATGAGTGACACGAGTTCTGTAAGCTTGGA GGAGCTGACACAATGAGTGACACAAGTTCTGTAAGCTTGGA < 41bp 1 0.558388619915316 1 0.227026134729385 experiment 0.883222760169368 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TEX264 ENSG00000164081 CDS Human protein_coding chr3:51737759 chr3:51737762 synonymous SNV . 0 24 hm5C_associated_SNPs_34296 0 0 1 0 1 TEX264 chr3:51737740 3'AG 51737740 Downstream 23bp
chr3 51737762 51737762 1 + G A SKCM 51737767 + 51737747 51737787 41 CACAATGAGTGACACGAGTTCTGTAAGCTTGGAAGTGAGCC CACAATGAGTGACACAAGTTCTGTAAGCTTGGAAGTGAGCC < 41bp 1 0.500900562271461 1 0.281080305576324 experiment 0.998198875457077 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TEX264 ENSG00000164081 CDS Human protein_coding chr3:51737767 chr3:51737762 synonymous SNV . 0 16 hm5C_associated_SNPs_34297 0 0 1 0 1 TEX264 chr3:51737740 3'AG 51737740 Downstream 23bp
chr7 150764051 150764051 1 + C T SKCM 150764061 + 150764041 150764081 41 ACCTCGGGCCCGACCCCGGGCCCCCCACAAGCCCCATGAGG ACCTCGGGCCTGACCCCGGGCCCCCCACAAGCCCCATGAGG < 41bp 1 0.0432999263452664 1 0.102660834789276 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150764061 chr7:150764051 stopgain 0.799 0 11 hm5C_associated_SNPs_34298 0 0 1 0 1 SLC4A2 chr7:150764080 5'GT 150764080 Upstream 30bp
chr7 150764051 150764051 1 + C T SKCM 150764062 + 150764042 150764082 41 CCTCGGGCCCGACCCCGGGCCCCCCACAAGCCCCATGAGGT CCTCGGGCCTGACCCCGGGCCCCCCACAAGCCCCATGAGGT < 41bp 1 0.0379588068154525 1 0.0770180523395538 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150764062 chr7:150764051 stopgain 0.799 0 10 hm5C_associated_SNPs_34299 0 0 1 0 1 SLC4A2 chr7:150764080 5'GT 150764080 Upstream 30bp
chr7 150764051 150764051 1 + C T SKCM 150764063 + 150764043 150764083 41 CTCGGGCCCGACCCCGGGCCCCCCACAAGCCCCATGAGGTA CTCGGGCCTGACCCCGGGCCCCCCACAAGCCCCATGAGGTA < 41bp 1 0.298652111452594 1 0.139803797006607 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150764063 chr7:150764051 stopgain 0.799 0 9 hm5C_associated_SNPs_34300 0 0 1 0 1 SLC4A2 chr7:150764080 5'GT 150764080 Upstream 30bp
chr1 57161680 57161680 1 + C T SKCM 57161696 + 57161676 57161716 41 CCCTCCCATTTGATGATGAGCATGTACCTACGTTATTTAAG CCCTTCCATTTGATGATGAGCATGTACCTACGTTATTTAAG < 41bp 1 0.167084907612328 1 0.0423670709133148 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57161696 chr1:57161680 synonymous SNV . 0 5 hm5C_associated_SNPs_34301 0 0 1 0 1 PRKAA2 chr1:57161608 3'AG 57161608 Downstream 73bp
chr6 160212136 160212136 1 + C T SKCM 160212137 + 160212117 160212157 41 GGGCTGGCGGACGGTGTTTCCCTCCCGTGAGTTCTGGCACA GGGCTGGCGGACGGTGTTTTCCTCCCGTGAGTTCTGGCACA < 41bp 1 0.289132856560905 1 0.273190885782242 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160212137 chr6:160212136 nonsynonymous SNV 0.293 4 20 hm5C_associated_SNPs_34302 0 0 1 0 1 MRPL18 chr6:160212158 5'GT 160212158 Upstream 23bp
chr8 124787428 124787428 1 + C T SKCM 124787439 + 124787419 124787459 41 TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGCT TATGAGGAATTGCTAAAGTACAGCCGAGATCATCTCATGCT < 41bp 1 0.404637632316744 1 0.171858578920364 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787439 chr8:124787428 synonymous SNV . 0 10 hm5C_associated_SNPs_34309 0 0 1 0 1 FAM91A1 chr8:124787387 3'AG 124787387 Downstream 42bp
chr19 41077994 41077994 1 + G A SKCM 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GGACTCCAAGGGCCCAGCATCCGGGAGCACACACGGTGGGG < 41bp 1 0.386908172170498 1 0.856758534908295 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41077994 synonymous SNV . 0 16 hm5C_associated_SNPs_34312 0 0 1 0 1 SPTBN4 chr19:41077925 3'AG 41077925 Downstream 70bp
chr22 24217312 24217312 1 + C T SKCM 24217331 + 24217311 24217351 41 TCCCTCCTGGTGAATAACATCTTTGTGGTGTCAGCAGCAAT TTCCTCCTGGTGAATAACATCTTTGTGGTGTCAGCAGCAAT < 41bp 1 0.120906571381172 1 0.199917733669281 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A11 ENSG00000133460;ENSG00000251357 CDS Human other chr22:24217331 chr22:24217312 nonsynonymous SNV 0.998 3 2 hm5C_associated_SNPs_34315 0 0 0 0 2 SLC2A11 chr22:24217304 3'AG 24217304 Downstream 9bp
chr22 24217312 24217312 1 + C T SKCM 24217331 + 24217311 24217351 41 TCCCTCCTGGTGAATAACATCTTTGTGGTGTCAGCAGCAAT TTCCTCCTGGTGAATAACATCTTTGTGGTGTCAGCAGCAAT < 41bp 1 0.120906571381172 1 0.199917733669281 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A11 ENSG00000133460;ENSG00000251357 CDS Human other chr22:24217331 chr22:24217312 nonsynonymous SNV 0.998 3 2 hm5C_associated_SNPs_34315 0 0 0 0 2 SLC2A11 chr22:24217308 3'AG 24217308 Downstream 5bp
chr16 2577843 2577843 1 + C T SKCM 2577853 + 2577833 2577873 41 CACCTCCGCTCCTTCGAGGCCGATGCCTTCCAGGACTTGCT CACCTCCGCTTCTTCGAGGCCGATGCCTTCCAGGACTTGCT < 41bp 1 0.119297170180956 1 0.134127885103226 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2577853 chr16:2577843 nonsynonymous SNV 0.998 3 11 hm5C_associated_SNPs_34316 0 0 1 0 1 AMDHD2 chr16:2577774 3'AG 2577774 Downstream 70bp
chr8 145535489 145535489 1 + C T SKCM 145535495 + 145535475 145535515 41 GGCTCCTGCCAGCCCCATGGCCTCCCCCGGCGGGAGCATAG GGCTCCTGCCAGCCTCATGGCCTCCCCCGGCGGGAGCATAG < 41bp 1 0.0360845268805103 1 0.0591858625411987 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSF1 ENSG00000185122 CDS Human protein_coding chr8:145535495 chr8:145535489 nonsynonymous SNV 0.069 2 15 hm5C_associated_SNPs_34317 0 0 1 0 1 HSF1 chr8:145535522 5'GT 145535522 Upstream 34bp
chr21 40191432 40191432 1 + C T SKCM 40191451 + 40191431 40191471 41 TCCCAAAGACCACGACTCCCCTGAGAACGGTGCGGACAGCT TTCCAAAGACCACGACTCCCCTGAGAACGGTGCGGACAGCT < 41bp 1 0.555939311448587 1 0.425661206245422 experiment 0.888121377102825 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191451 chr21:40191432 nonsynonymous SNV 0.061 0 2 hm5C_associated_SNPs_34318 0 0 1 0 1 ETS2 chr21:40191427 3'AG 40191427 Downstream 6bp
chr8 145537219 145537219 1 + G A SKCM 145537206 + 145537186 145537226 41 TCCCGGGCCAGGAATGAGCTCAGTGACCACTTGGATGCTAT TCCCGGGCCAGGAATGAGCTCAGTGACCACTTGAATGCTAT < 41bp 1 0.271973991010469 1 0.202505379915237 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HSF1 ENSG00000185122 CDS Human protein_coding chr8:145537206 chr8:145537219 nonsynonymous SNV 0.994 3 34 hm5C_associated_SNPs_34319 0 0 1 0 2 HSF1 chr8:145537197 3'AG 145537197 Downstream 23bp
chr8 145537219 145537219 1 + G A SKCM 145537206 + 145537186 145537226 41 TCCCGGGCCAGGAATGAGCTCAGTGACCACTTGGATGCTAT TCCCGGGCCAGGAATGAGCTCAGTGACCACTTGAATGCTAT < 41bp 1 0.271973991010469 1 0.202505379915237 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HSF1 ENSG00000185122 CDS Human protein_coding chr8:145537206 chr8:145537219 nonsynonymous SNV 0.994 3 34 hm5C_associated_SNPs_34319 0 0 1 0 2 HSF1 chr8:145537302 5'GT 145537302 Upstream 84bp
chr2 216197195 216197195 1 + C T SKCM 216197204 + 216197184 216197224 41 TTTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCC TTTAGGTATTCTAGCCGCTGCCTCTTTCAAACATGTCAGCC < 41bp 1 0.0397841550511465 1 0.094255119562149 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216197204 chr2:216197195 nonsynonymous SNV 0.392 3 12 hm5C_associated_SNPs_34320 0 0 1 0 2 ATIC chr2:216197105 3'AG 216197105 Downstream 91bp
chr2 216197195 216197195 1 + C T SKCM 216197204 + 216197184 216197224 41 TTTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCC TTTAGGTATTCTAGCCGCTGCCTCTTTCAAACATGTCAGCC < 41bp 1 0.0397841550511465 1 0.094255119562149 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216197204 chr2:216197195 nonsynonymous SNV 0.392 3 12 hm5C_associated_SNPs_34320 0 0 1 0 2 ATIC chr2:216197230 5'GT 216197230 Upstream 36bp
chr2 216197195 216197195 1 + C T SKCM 216197205 + 216197185 216197225 41 TTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCCC TTAGGTATTCTAGCCGCTGCCTCTTTCAAACATGTCAGCCC < 41bp 1 0.377925078049815 1 0.312017202377319 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216197205 chr2:216197195 nonsynonymous SNV 0.392 3 11 hm5C_associated_SNPs_34321 0 0 1 0 2 ATIC chr2:216197105 3'AG 216197105 Downstream 91bp
chr2 216197195 216197195 1 + C T SKCM 216197205 + 216197185 216197225 41 TTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCCC TTAGGTATTCTAGCCGCTGCCTCTTTCAAACATGTCAGCCC < 41bp 1 0.377925078049815 1 0.312017202377319 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216197205 chr2:216197195 nonsynonymous SNV 0.392 3 11 hm5C_associated_SNPs_34321 0 0 1 0 2 ATIC chr2:216197230 5'GT 216197230 Upstream 36bp
chr2 128184767 128184767 1 + G A SKCM 128184754 + 128184734 128184774 41 CCCCTCCTGGGTGCTGACAGCGGCCCACTGCATGGATGAGT CCCCTCCTGGGTGCTGACAGCGGCCCACTGCATAGATGAGT < 41bp 1 0.307086184787992 1 0.421712130308151 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128184754 chr2:128184767 nonsynonymous SNV 0.914 1 34 hm5C_associated_SNPs_34324 0 0 1 0 2 PROC chr2:128184681 3'AG 128184681 Downstream 87bp
chr2 128184767 128184767 1 + G A SKCM 128184754 + 128184734 128184774 41 CCCCTCCTGGGTGCTGACAGCGGCCCACTGCATGGATGAGT CCCCTCCTGGGTGCTGACAGCGGCCCACTGCATAGATGAGT < 41bp 1 0.307086184787992 1 0.421712130308151 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128184754 chr2:128184767 nonsynonymous SNV 0.914 1 34 hm5C_associated_SNPs_34324 0 0 1 0 2 PROC chr2:128184798 5'GT 128184798 Upstream 32bp
chr15 91456116 91456116 1 + C T SKCM 91456118 + 91456098 91456138 41 TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCCCGTGCTGCG TTTCTCTAGCCCTACGTCTCCAAGGAGCCCCCCGTGCTGCG < 41bp 1 0.639139767524441 1 0.906576037406921 experiment 0.721720464951118 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91456118 chr15:91456116 nonsynonymous SNV 0.912 1 19 hm5C_associated_SNPs_34325 0 0 1 0 1 MAN2A2 chr15:91456107 3'AG 91456107 Downstream 10bp
chr15 22969243 22969243 1 + C T SKCM 22969231 + 22969211 22969251 41 AGCCGGTACCTGACGCTGGACGGCTTCGACGCCATGTTCCG AGCCGGTACCTGACGCTGGACGGCTTCGACGCTATGTTCCG < 41bp 1 0.498454496936869 1 0.138929188251495 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22969231 chr15:22969243 synonymous SNV . 0 33 hm5C_associated_SNPs_34326 0 0 1 0 1 CYFIP1 chr15:22969163 3'AG 22969163 Downstream 81bp
chr20 30738490 30738490 1 + C T SKCM 30738486 + 30738466 30738506 41 GCTCTCATGACCACAGCCTGCTTCCTCTTCATGTTCATGGG GCTCTCATGACCACAGCCTGCTTCTTCTTCATGTTCATGGG < 41bp 1 0.21862976171069 1 0.0218274593353271 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30738486 chr20:30738490 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_34327 0 0 1 0 2 TM9SF4 chr20:30738425 3'AG 30738425 Downstream 66bp
chr20 30738490 30738490 1 + C T SKCM 30738486 + 30738466 30738506 41 GCTCTCATGACCACAGCCTGCTTCCTCTTCATGTTCATGGG GCTCTCATGACCACAGCCTGCTTCTTCTTCATGTTCATGGG < 41bp 1 0.21862976171069 1 0.0218274593353271 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30738486 chr20:30738490 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_34327 0 0 1 0 2 TM9SF4 chr20:30738506 5'GT 30738506 Upstream 17bp
chr21 33785321 33785321 1 + G T SKCM 33785319 + 33785299 33785339 41 CTCAGCGCTCACCGACTTCTCTGGTAAGAGCGCCCTCCCTG CTCAGCGCTCACCGACTTCTCTTGTAAGAGCGCCCTCCCTG < 41bp 1 0.534625035005064 1 0.11529666185379 experiment 0.930749929989872 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33785319 chr21:33785321 stopgain 0.999 4 23 hm5C_associated_SNPs_34328 0 0 0 3 1 EVA1C chr21:33785321 5'GT 33785321 Upstream 1bp
chr8 126194372 126194372 1 + C T SKCM 126194360 + 126194340 126194380 41 CTTAGGTGAAAGAAGAACGTCCAGAAAAAATACCAGATTTA CTTAGGTGAAAGAAGAACGTCCAGAAAAAATATCAGATTTA < 41bp 1 0.326451499826273 1 0.212933897972107 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NSMCE2 ENSG00000156831 CDS Human protein_coding chr8:126194360 chr8:126194372 nonsynonymous SNV 0.982 1 33 hm5C_associated_SNPs_34329 0 0 1 0 1 NSMCE2 chr8:126194345 3'AG 126194345 Downstream 28bp
chr7 101188654 101188654 1 + G A SKCM 101188639 + 101188619 101188659 41 GGCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAG GGCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTAGAGAG < 41bp 1 0.301256825121782 1 0.327515482902527 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188639 chr7:101188654 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_34330 0 0 0 0 1 COL26A1 chr7:101188619 3'AG 101188619 Downstream 36bp
chr7 101188654 101188654 1 + G A SKCM 101188640 + 101188620 101188660 41 GCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAGA GCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTAGAGAGA < 41bp 1 0.303460719884067 1 0.197861969470978 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188640 chr7:101188654 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_34331 0 0 0 0 1 COL26A1 chr7:101188619 3'AG 101188619 Downstream 36bp
chr7 101188654 101188654 1 + G A SKCM 101188641 + 101188621 101188661 41 CTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAGAT CTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTAGAGAGAT < 41bp 1 0.189760068260086 1 0.262487649917603 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188641 chr7:101188654 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_34332 0 0 0 0 1 COL26A1 chr7:101188619 3'AG 101188619 Downstream 36bp
chr7 100151739 100151739 1 + G A SKCM 100151721 + 100151701 100151741 41 TCCTTCTCCTCCAAGCCCGTCAGTCAGTCTCACGCTCGGAC TCCTTCTCCTCCAAGCCCGTCAGTCAGTCTCACGCTCGAAC < 41bp 1 0.0384890089586174 1 0.025151789188385 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGFG2 ENSG00000106351 CDS Human protein_coding chr7:100151721 chr7:100151739 synonymous SNV . 0 39 hm5C_associated_SNPs_34333 0 0 1 0 1 AGFG2 chr7:100151716 3'AG 100151716 Downstream 24bp
chr14 104518379 104518379 1 + T G SKCM 104518381 + 104518361 104518401 41 GCAGAGGGAAGAACACCTTTCTCTACCAGCTCCACAAACTG GCAGAGGGAAGAACACCTGTCTCTACCAGCTCCACAAACTG < 41bp 1 0.470938527882358 1 0.775957405567169 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TDRD9 ENSG00000156414 CDS Human protein_coding chr14:104518381 chr14:104518379 nonsynonymous SNV 0.966 0 19 hm5C_associated_SNPs_34334 0 0 0 0 1 TDRD9 chr14:104518318 3'AG 104518318 Downstream 62bp
chr1 78001598 78001598 1 + C T SKCM 78001588 + 78001568 78001608 41 TCGGCAGACACCATGACCAACCGCCTTCTCCAAAGGAGCCG TCGGCAGACACCATGACCAACCGCCTTCTCTAAAGGAGCCG < 41bp 1 0.131026469506359 1 0.0748502314090729 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001588 chr1:78001598 stopgain 0.625 0 31 hm5C_associated_SNPs_34335 0 0 0 0 1 AK5 chr1:78001532 3'AG 78001532 Downstream 67bp
chr1 78001598 78001598 1 + C T SKCM 78001612 + 78001592 78001632 41 CTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGTGGACGACAC CTTCTCTAAAGGAGCCGGAGCAGCCTGCCTGTGGACGACAC < 41bp 1 0.382861457391784 1 0.322085559368134 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001612 chr1:78001598 stopgain 0.625 0 7 hm5C_associated_SNPs_34336 0 0 0 0 1 AK5 chr1:78001532 3'AG 78001532 Downstream 67bp
chr7 142458477 142458477 1 + C T SKCM 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTCCCCTACTAGGTGTCCC < 41bp 1 0.174885909750827 1 0.262619346380234 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458477 stopgain 0.997 1 32 hm5C_associated_SNPs_34337 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 72bp
chr7 142458477 142458477 1 + C T SKCM 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTCCCCTACTAGGTGTCCC < 41bp 1 0.174885909750827 1 0.262619346380234 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458477 stopgain 0.997 1 32 hm5C_associated_SNPs_34337 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 89bp
chr7 142458477 142458477 1 + C T SKCM 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTCCCCTACTAGGTGTCCCTGAA < 41bp 1 0.13098846466837 1 0.1374531686306 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458477 stopgain 0.997 1 28 hm5C_associated_SNPs_34338 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 72bp
chr7 142458477 142458477 1 + C T SKCM 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTCCCCTACTAGGTGTCCCTGAA < 41bp 1 0.13098846466837 1 0.1374531686306 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458477 stopgain 0.997 1 28 hm5C_associated_SNPs_34338 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 89bp
chr7 142458477 142458477 1 + C T SKCM 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTCCCCTACTAGGTGTCCCTGAAT < 41bp 1 0.148492513159211 1 0.100500404834747 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458477 stopgain 0.997 1 27 hm5C_associated_SNPs_34339 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 72bp
chr7 142458477 142458477 1 + C T SKCM 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTCCCCTACTAGGTGTCCCTGAAT < 41bp 1 0.148492513159211 1 0.100500404834747 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458477 stopgain 0.997 1 27 hm5C_associated_SNPs_34339 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 89bp
chr7 142458477 142458477 1 + C T SKCM 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTCCCCTACTAGGTGTCCCTGAATT < 41bp 1 0.0204570600180675 1 0.0494898855686188 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458477 stopgain 0.997 1 26 hm5C_associated_SNPs_34340 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 72bp
chr7 142458477 142458477 1 + C T SKCM 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTCCCCTACTAGGTGTCCCTGAATT < 41bp 1 0.0204570600180675 1 0.0494898855686188 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458477 stopgain 0.997 1 26 hm5C_associated_SNPs_34340 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 89bp
chr7 142458477 142458477 1 + C T SKCM 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTCCCCTACTAGGTGTCCCTGAATTC < 41bp 1 0.210732630180587 1 0.082306832075119 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458477 stopgain 0.997 1 25 hm5C_associated_SNPs_34341 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 72bp
chr7 142458477 142458477 1 + C T SKCM 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTCCCCTACTAGGTGTCCCTGAATTC < 41bp 1 0.210732630180587 1 0.082306832075119 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458477 stopgain 0.997 1 25 hm5C_associated_SNPs_34341 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 89bp
chr7 142458477 142458477 1 + C T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCCTACTAGGTGTCCCTGAATTCTGG < 41bp 1 0.434710289813155 1 0.329152554273605 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458477 stopgain 0.997 1 22 hm5C_associated_SNPs_34342 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 72bp
chr7 142458477 142458477 1 + C T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCCTACTAGGTGTCCCTGAATTCTGG < 41bp 1 0.434710289813155 1 0.329152554273605 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458477 stopgain 0.997 1 22 hm5C_associated_SNPs_34342 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 89bp
chr7 142458477 142458477 1 + C T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACTAGGTGTCCCTGAATTCTGGCTACCACT < 41bp 1 0.104187984766499 1 0.02646404504776 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458477 stopgain 0.997 1 14 hm5C_associated_SNPs_34343 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 72bp
chr7 142458477 142458477 1 + C T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACTAGGTGTCCCTGAATTCTGGCTACCACT < 41bp 1 0.104187984766499 1 0.02646404504776 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458477 stopgain 0.997 1 14 hm5C_associated_SNPs_34343 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 89bp
chr7 142458477 142458477 1 + C T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACTAGGTGTCCCTGAATTCTGGCTACCACTT < 41bp 1 0.291927075917926 1 0.0671525895595551 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458477 stopgain 0.997 1 13 hm5C_associated_SNPs_34344 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 72bp
chr7 142458477 142458477 1 + C T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACTAGGTGTCCCTGAATTCTGGCTACCACTT < 41bp 1 0.291927075917926 1 0.0671525895595551 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458477 stopgain 0.997 1 13 hm5C_associated_SNPs_34344 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 89bp
chr7 142458477 142458477 1 + C T SKCM 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTACTAGGTGTCCCTGAATTCTGGCTACCACTTC < 41bp 1 0.686070601172392 1 0.442617535591125 experiment 0.627858797655215 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458477 stopgain 0.997 1 12 hm5C_associated_SNPs_34345 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 72bp
chr7 142458477 142458477 1 + C T SKCM 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTACTAGGTGTCCCTGAATTCTGGCTACCACTTC < 41bp 1 0.686070601172392 1 0.442617535591125 experiment 0.627858797655215 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458477 stopgain 0.997 1 12 hm5C_associated_SNPs_34345 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 89bp
chr7 142458477 142458477 1 + C T SKCM 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG CTACTAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG < 41bp 1 0.766808149366385 1 0.737652897834778 experiment 0.46638370126723 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458477 stopgain 0.997 1 5 hm5C_associated_SNPs_34346 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 72bp
chr7 142458477 142458477 1 + C T SKCM 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG CTACTAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG < 41bp 1 0.766808149366385 1 0.737652897834778 experiment 0.46638370126723 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458477 stopgain 0.997 1 5 hm5C_associated_SNPs_34346 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 89bp
chr7 142458477 142458477 1 + C T SKCM 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC TAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC < 41bp 1 0.0709291301110893 1 0.0273494720458984 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458477 stopgain 0.997 1 1 hm5C_associated_SNPs_34347 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 72bp
chr7 142458477 142458477 1 + C T SKCM 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC TAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC < 41bp 1 0.0709291301110893 1 0.0273494720458984 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458477 stopgain 0.997 1 1 hm5C_associated_SNPs_34347 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 89bp
chr10 101515430 101515430 1 + C T SKCM 101515429 + 101515409 101515449 41 ACTTTCTTGCTCAGAATATTCCCTAAAGGTAACAGATGTGA ACTTTCTTGCTCAGAATATTCTCTAAAGGTAACAGATGTGA < 41bp 1 0.692140085717237 1 0.533868074417114 experiment 0.615719828565525 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CUTC ENSG00000119929 CDS Human protein_coding chr10:101515429 chr10:101515430 synonymous SNV . 0 22 hm5C_associated_SNPs_34348 0 0 1 2 1 CUTC chr10:101515382 3'AG 101515382 Downstream 49bp
chr17 79671701 79671701 1 + G A SKCM 79671721 + 79671701 79671741 41 GGGTGGTGTGATGTCTGGGGCTGTCCCTGCTGCAGCAGCCC AGGTGGTGTGATGTCTGGGGCTGTCCCTGCTGCAGCAGCCC < 41bp 1 0.0995046977920496 1 0.0591919422149658 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79671721 chr17:79671701 nonsynonymous SNV 0.015 0 1 hm5C_associated_SNPs_34349 0 0 1 0 2 MRPL12 chr17:79671663 3'AG 79671663 Downstream 39bp
chr17 79671701 79671701 1 + G A SKCM 79671721 + 79671701 79671741 41 GGGTGGTGTGATGTCTGGGGCTGTCCCTGCTGCAGCAGCCC AGGTGGTGTGATGTCTGGGGCTGTCCCTGCTGCAGCAGCCC < 41bp 1 0.0995046977920496 1 0.0591919422149658 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79671721 chr17:79671701 nonsynonymous SNV 0.015 0 1 hm5C_associated_SNPs_34349 0 0 1 0 2 MRPL12 chr17:79671746 5'GT 79671746 Upstream 46bp
chr16 55523598 55523598 1 + C T SKCM 55523610 + 55523590 55523630 41 AAGGTGCCCCCTGTGTCTTCCCCTTCACTTTCCTGGGCAAC AAGGTGCCTCCTGTGTCTTCCCCTTCACTTTCCTGGGCAAC < 41bp 1 0.0407168750689326 1 0.454958081245422 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP2 ENSG00000087245 CDS Human protein_coding chr16:55523610 chr16:55523598 nonsynonymous SNV 0.991 2 9 hm5C_associated_SNPs_34350 0 0 0 0 1 MMP2 chr16:55523563 3'AG 55523563 Downstream 36bp
chr16 2732752 2732752 1 + C T SKCM 2732745 + 2732725 2732765 41 GGCAGACCCTGTGCCGGGACCCGAAATCCTTCCTGTACCGC GGCAGACCCTGTGCCGGGACCCGAAATTCTTCCTGTACCGC < 41bp 1 0.492117046351303 1 0.29377555847168 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD5 ENSG00000167977 CDS Human protein_coding chr16:2732745 chr16:2732752 nonsynonymous SNV 0.985 4 28 hm5C_associated_SNPs_34351 0 0 1 0 1 KCTD5 chr16:2732801 5'GT 2732801 Upstream 50bp
chr2 178080267 178080267 1 + G A SKCM 178080269 + 178080249 178080289 41 ATTGGTTCTTTCTCTCAGGGCCATGATCCAAAGGAACCAGA ATTGGTTCTTTCTCTCAGAGCCATGATCCAAAGGAACCAGA < 41bp 1 0.0913469892892785 1 0.107487440109253 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HNRNPA3 ENSG00000170144 CDS Human protein_coding chr2:178080269 chr2:178080267 nonsynonymous SNV 0.973 2 19 hm5C_associated_SNPs_34353 0 0 1 0 1 HNRNPA3 chr2:178080267 3'AG 178080267 Downstream 1bp
chr7 101188655 101188655 1 + G T SKCM 101188639 + 101188619 101188659 41 GGCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAG GGCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGTAGAG < 41bp 1 0.283919311451889 1 0.425828605890274 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188639 chr7:101188655 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_34354 0 0 0 0 1 COL26A1 chr7:101188619 3'AG 101188619 Downstream 37bp
chr7 101188655 101188655 1 + G T SKCM 101188640 + 101188620 101188660 41 GCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAGA GCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGTAGAGA < 41bp 1 0.304317599208538 1 0.208202064037323 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188640 chr7:101188655 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_34355 0 0 0 0 1 COL26A1 chr7:101188619 3'AG 101188619 Downstream 37bp
chr7 101188655 101188655 1 + G T SKCM 101188641 + 101188621 101188661 41 CTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAGAT CTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGTAGAGAT < 41bp 1 0.227917007822307 1 0.252063363790512 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188641 chr7:101188655 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_34356 0 0 0 0 1 COL26A1 chr7:101188619 3'AG 101188619 Downstream 37bp
chr19 18232718 18232718 1 + C T SKCM 18232699 + 18232679 18232719 41 TAGTCCTCGGAATTTCTCGGCTGCCTCTGCCCTAAATTTCC TAGTCCTCGGAATTTCTCGGCTGCCTCTGCCCTAAATTTTC < 41bp 1 0.078725691729842 1 0.109431982040405 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST3 ENSG00000099308 CDS Human protein_coding chr19:18232699 chr19:18232718 synonymous SNV . 0 40 hm5C_associated_SNPs_34357 0 0 1 0 2 MAST3 chr19:18232660 3'AG 18232660 Downstream 59bp
chr19 18232718 18232718 1 + C T SKCM 18232699 + 18232679 18232719 41 TAGTCCTCGGAATTTCTCGGCTGCCTCTGCCCTAAATTTCC TAGTCCTCGGAATTTCTCGGCTGCCTCTGCCCTAAATTTTC < 41bp 1 0.078725691729842 1 0.109431982040405 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST3 ENSG00000099308 CDS Human protein_coding chr19:18232699 chr19:18232718 synonymous SNV . 0 40 hm5C_associated_SNPs_34357 0 0 1 0 2 MAST3 chr19:18232732 5'GT 18232732 Upstream 15bp
chr1 233482338 233482338 1 + C T SKCM 233482335 + 233482315 233482355 41 GGCCCCCGAAGTGATCAAGTCTTCCTTGTTTTCTAAGGGAA GGCCCCCGAAGTGATCAAGTCTTTCTTGTTTTCTAAGGGAA < 41bp 1 0.0645721360128823 1 0.0497785806655884 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233482335 chr1:233482338 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_34359 0 0 1 0 1 MAP3K21 chr1:233482368 5'GT 233482368 Upstream 31bp
chr17 27014432 27014432 1 + G A SKCM 27014434 + 27014414 27014454 41 TGCCCACCCTTACAGCCAGGCCTTGATCCAGTATGTTTGTG TGCCCACCCTTACAGCCAAGCCTTGATCCAGTATGTTTGTG < 41bp 1 0.0274437467017678 1 0.0362472534179688 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27014434 chr17:27014432 synonymous SNV . 0 19 hm5C_associated_SNPs_34360 0 0 1 0 1 SUPT6H chr17:27014489 5'GT 27014489 Upstream 58bp
chr2 201485964 201485964 1 + G A SKCM 201485944 + 201485924 201485964 41 CTTCTGCTTTTTTACTGAAGCTGAGAAATTTCTGGCGACAG CTTCTGCTTTTTTACTGAAGCTGAGAAATTTCTGGCGACAA < 41bp 1 0.435731106267536 1 0.184911340475082 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AOX1 ENSG00000138356 CDS Human protein_coding chr2:201485944 chr2:201485964 nonsynonymous SNV 0.199 0 41 hm5C_associated_SNPs_34361 0 0 0 0 1 AOX1 chr2:201485969 5'GT 201485969 Upstream 6bp
chr10 80968130 80968130 1 + C T SKCM 80968135 + 80968115 80968155 41 TCCACAATGCCGCCACGGAGCTGCTGGACTGGTGCGGAGAC TCCACAATGCCGCCATGGAGCTGCTGGACTGGTGCGGAGAC < 41bp 1 0.344825086089632 1 0.113442689180374 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ1 ENSG00000108175 CDS Human protein_coding chr10:80968135 chr10:80968130 nonsynonymous SNV 0.986 3 16 hm5C_associated_SNPs_34363 0 0 1 0 2 ZMIZ1 chr10:80968093 3'AG 80968093 Downstream 38bp
chr10 80968130 80968130 1 + C T SKCM 80968135 + 80968115 80968155 41 TCCACAATGCCGCCACGGAGCTGCTGGACTGGTGCGGAGAC TCCACAATGCCGCCATGGAGCTGCTGGACTGGTGCGGAGAC < 41bp 1 0.344825086089632 1 0.113442689180374 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ1 ENSG00000108175 CDS Human protein_coding chr10:80968135 chr10:80968130 nonsynonymous SNV 0.986 3 16 hm5C_associated_SNPs_34363 0 0 1 0 2 ZMIZ1 chr10:80968206 5'GT 80968206 Upstream 77bp
chr14 24779948 24779948 1 + C T SKCM 24779945 + 24779925 24779965 41 TCGCGGGCCACAGGCACAGCCTTCCTGCTGCTGGCGGCGCT TCGCGGGCCACAGGCACAGCCTTTCTGCTGCTGGCGGCGCT < 41bp 1 0.0867903170767121 1 0.136210024356842 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LTB4R2 ENSG00000213906;ENSG00000272658 CDS Human other chr14:24779945 chr14:24779948 synonymous SNV . 0 24 hm5C_associated_SNPs_34364 0 0 1 0 1 CIDEB;LTB4R2 chr14:24779861 3'AG 24779861 Downstream 88bp
chr10 80968129 80968129 1 + A T SKCM 80968135 + 80968115 80968155 41 TCCACAATGCCGCCACGGAGCTGCTGGACTGGTGCGGAGAC TCCACAATGCCGCCTCGGAGCTGCTGGACTGGTGCGGAGAC < 41bp 1 0.343595402954229 1 0.121447950601578 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ1 ENSG00000108175 CDS Human protein_coding chr10:80968135 chr10:80968129 nonsynonymous SNV 0.984 2 15 hm5C_associated_SNPs_34365 0 0 1 0 2 ZMIZ1 chr10:80968093 3'AG 80968093 Downstream 37bp
chr10 80968129 80968129 1 + A T SKCM 80968135 + 80968115 80968155 41 TCCACAATGCCGCCACGGAGCTGCTGGACTGGTGCGGAGAC TCCACAATGCCGCCTCGGAGCTGCTGGACTGGTGCGGAGAC < 41bp 1 0.343595402954229 1 0.121447950601578 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ1 ENSG00000108175 CDS Human protein_coding chr10:80968135 chr10:80968129 nonsynonymous SNV 0.984 2 15 hm5C_associated_SNPs_34365 0 0 1 0 2 ZMIZ1 chr10:80968206 5'GT 80968206 Upstream 78bp
chr11 61488210 61488210 1 + C T SKCM 61488204 + 61488184 61488224 41 GGTCTATAACCCGCACGAGGCCTGCTCCCTGAACCTGGTGG GGTCTATAACCCGCACGAGGCCTGCTTCCTGAACCTGGTGG < 41bp 1 0.0661865197039449 1 0.0337595045566559 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61488204 chr11:61488210 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_34366 0 0 0 0 1 DAGLA chr11:61488151 3'AG 61488151 Downstream 60bp
chr7 92987678 92987678 1 + C T SKCM 92987685 + 92987665 92987705 41 GTTTGCCTGGGATCCCATATCAATAAGAAAGCAAGACAAAA GTTTGCCTGGGATTCCATATCAATAAGAAAGCAAGACAAAA < 41bp 1 0.53164437209305 1 0.387299180030823 experiment 0.936711255813899 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS50 ENSG00000004766 CDS Human protein_coding chr7:92987685 chr7:92987678 nonsynonymous SNV 0.999 2 14 hm5C_associated_SNPs_34367 0 0 1 0 1 VPS50 chr7:92987629 3'AG 92987629 Downstream 50bp
chr9 135929310 135929310 1 + C T SKCM 135929296 + 135929276 135929316 41 ATGCCAAGATTTATCAAGTCCTCGATTTCCGAATCCGTTGT ATGCCAAGATTTATCAAGTCCTCGATTTCCGAATTCGTTGT < 41bp 1 0.758901730097043 1 0.915213346481323 experiment 0.482196539805914 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135929296 chr9:135929310 synonymous SNV . 0 35 hm5C_associated_SNPs_34368 0 0 1 0 2 GTF3C5 chr9:135929215 3'AG 135929215 Downstream 96bp
chr9 135929310 135929310 1 + C T SKCM 135929296 + 135929276 135929316 41 ATGCCAAGATTTATCAAGTCCTCGATTTCCGAATCCGTTGT ATGCCAAGATTTATCAAGTCCTCGATTTCCGAATTCGTTGT < 41bp 1 0.758901730097043 1 0.915213346481323 experiment 0.482196539805914 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135929296 chr9:135929310 synonymous SNV . 0 35 hm5C_associated_SNPs_34368 0 0 1 0 2 GTF3C5 chr9:135929329 5'GT 135929329 Upstream 20bp
chr1 248039236 248039236 1 + G A SKCM 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCAAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA < 41bp 1 0.709492139924229 1 0.348891019821167 experiment 0.581015720151541 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039236 synonymous SNV . 0 6 hm5C_associated_SNPs_34370 0 0 0 0 1 TRIM58 chr1:248039202 3'AG 248039202 Downstream 35bp
chr1 206902119 206902119 1 + C T SKCM 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCTGCACATCGTACGGATCGTGGATGTGTACGAGAATCT < 41bp 1 0.490777016380997 1 0.293826222419739 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902119 nonsynonymous SNV 0.860 1 5 hm5C_associated_SNPs_34371 0 0 1 0 2 MAPKAPK2 chr1:206902055 3'AG 206902055 Downstream 65bp
chr1 206902119 206902119 1 + C T SKCM 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCTGCACATCGTACGGATCGTGGATGTGTACGAGAATCT < 41bp 1 0.490777016380997 1 0.293826222419739 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902119 nonsynonymous SNV 0.860 1 5 hm5C_associated_SNPs_34371 0 0 1 0 2 MAPKAPK2 chr1:206902194 5'GT 206902194 Upstream 76bp
chr19 35741251 35741251 1 + A G SKCM 35741270 + 35741250 35741290 41 AACCCCTACCACGTGGTGATCCTCTTCCAGCCTGTGACCCT AGCCCCTACCACGTGGTGATCCTCTTCCAGCCTGTGACCCT < 41bp 1 0.107948381042895 1 0.0160469710826874 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35741270 chr19:35741251 nonsynonymous SNV 0.583 0 2 hm5C_associated_SNPs_34373 0 0 1 0 2 LSR chr19:35741218 3'AG 35741218 Downstream 34bp
chr19 35741251 35741251 1 + A G SKCM 35741270 + 35741250 35741290 41 AACCCCTACCACGTGGTGATCCTCTTCCAGCCTGTGACCCT AGCCCCTACCACGTGGTGATCCTCTTCCAGCCTGTGACCCT < 41bp 1 0.107948381042895 1 0.0160469710826874 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35741270 chr19:35741251 nonsynonymous SNV 0.583 0 2 hm5C_associated_SNPs_34373 0 0 1 0 2 LSR chr19:35741228 3'AG 35741228 Downstream 24bp
chr5 176083809 176083809 1 + C T SKCM 176083814 + 176083794 176083834 41 TTCATGGGCATCGCCCTCCTCCAGGTACCCTTGTGGCCCCA TTCATGGGCATCGCCTTCCTCCAGGTACCCTTGTGGCCCCA < 41bp 1 0.746775672481607 1 0.964404702186584 experiment 0.506448655036785 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176083814 chr5:176083809 nonsynonymous SNV 0.862 3 16 hm5C_associated_SNPs_34375 0 0 1 0 1 TSPAN17 chr5:176083817 5'GT 176083817 Upstream 9bp
chr14 105175702 105175702 1 + C T SKCM 105175682 + 105175662 105175702 41 CCAAGTTTGATGTGGAGGTTCTCAAACAACTCCTTAAGCTC CCAAGTTTGATGTGGAGGTTCTCAAACAACTCCTTAAGCTT < 41bp 1 0.461138607712066 1 0.812896728515625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105175682 chr14:105175702 synonymous SNV . 0 41 hm5C_associated_SNPs_34376 0 0 1 2 2 INF2 chr14:105175618 3'AG 105175618 Downstream 85bp
chr14 105175702 105175702 1 + C T SKCM 105175682 + 105175662 105175702 41 CCAAGTTTGATGTGGAGGTTCTCAAACAACTCCTTAAGCTC CCAAGTTTGATGTGGAGGTTCTCAAACAACTCCTTAAGCTT < 41bp 1 0.461138607712066 1 0.812896728515625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105175682 chr14:105175702 synonymous SNV . 0 41 hm5C_associated_SNPs_34376 0 0 1 2 2 INF2 chr14:105175720 5'GT 105175720 Upstream 19bp
chr2 74154162 74154162 1 + C T SKCM 74154149 + 74154129 74154169 41 GCCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAA GCCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTTCATCGAA < 41bp 1 0.660392244147249 1 0.245358109474182 experiment 0.679215511705502 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154149 chr2:74154162 nonsynonymous SNV 0.990 5 34 hm5C_associated_SNPs_34377 0 0 1 1 1 DGUOK chr2:74154179 5'GT 74154179 Upstream 18bp
chr2 74154162 74154162 1 + C T SKCM 74154151 + 74154131 74154171 41 CTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAAGG CTGCACGCGGGGCGCGGGCCCCGAAGGCTCTTCATCGAAGG < 41bp 1 0.772466251604358 1 0.501109004020691 experiment 0.455067496791283 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154151 chr2:74154162 nonsynonymous SNV 0.990 5 32 hm5C_associated_SNPs_34378 0 0 1 1 1 DGUOK chr2:74154179 5'GT 74154179 Upstream 18bp
chr2 74154162 74154162 1 + C T SKCM 74154152 + 74154132 74154172 41 TGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAAGGC TGCACGCGGGGCGCGGGCCCCGAAGGCTCTTCATCGAAGGC < 41bp 1 0.726858837164629 1 0.726097583770752 experiment 0.546282325670742 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154152 chr2:74154162 nonsynonymous SNV 0.990 5 31 hm5C_associated_SNPs_34379 0 0 1 1 1 DGUOK chr2:74154179 5'GT 74154179 Upstream 18bp
chr1 201981877 201981877 1 + C T SKCM 201981858 + 201981838 201981878 41 CTGTGGCGCAGGAGCCCCCTCCCCTGGCAGCTCTGACGTCT CTGTGGCGCAGGAGCCCCCTCCCCTGGCAGCTCTGACGTTT < 41bp 1 0.361889672828123 1 0.448528081178665 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ELF3 ENSG00000163435 CDS Human protein_coding chr1:201981858 chr1:201981877 synonymous SNV . 0 40 hm5C_associated_SNPs_34380 0 0 0 0 1 ELF3 chr1:201981887 5'GT 201981887 Upstream 11bp
chr4 154197099 154197099 1 + C T SKCM 154197108 + 154197088 154197128 41 TGCCCAGTGTGCCGCCAGACCTCCATCCTGCCCGAGAAAGG TGCCCAGTGTGTCGCCAGACCTCCATCCTGCCCGAGAAAGG < 41bp 1 0.778041261446761 1 0.780029356479645 experiment 0.443917477106478 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154197108 chr4:154197099 synonymous SNV . 0 12 hm5C_associated_SNPs_34381 0 0 0 0 1 TRIM2 chr4:154197045 3'AG 154197045 Downstream 55bp
chr7 44747488 44747488 1 + C T SKCM 44747498 + 44747478 44747518 41 GTATGCCGGCCGGGACCCAGCGGCTGCTCCAGCCACCGGCA GTATGCCGGCTGGGACCCAGCGGCTGCTCCAGCCACCGGCA < 41bp 1 0.762989438699582 1 0.748678624629974 experiment 0.474021122600836 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44747498 chr7:44747488 nonsynonymous SNV 0.995 4 11 hm5C_associated_SNPs_34382 0 0 1 0 1 OGDH chr7:44747478 3'AG 44747478 Downstream 11bp
chr15 65931956 65931956 1 + G A SKCM 65931959 + 65931939 65931979 41 TCCTTGCTGACCCGAGGGAGCAGCTCGACCTCTCTGCACAA TCCTTGCTGACCCGAGGAAGCAGCTCGACCTCTCTGCACAA < 41bp 1 0.609649891751036 1 0.588404417037964 experiment 0.780700216497928 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC24A1 ENSG00000074621 CDS Human protein_coding chr15:65931959 chr15:65931956 synonymous SNV . 0 18 hm5C_associated_SNPs_34383 0 0 0 0 2 SLC24A1 chr15:65931933 3'AG 65931933 Downstream 24bp
chr15 65931956 65931956 1 + G A SKCM 65931959 + 65931939 65931979 41 TCCTTGCTGACCCGAGGGAGCAGCTCGACCTCTCTGCACAA TCCTTGCTGACCCGAGGAAGCAGCTCGACCTCTCTGCACAA < 41bp 1 0.609649891751036 1 0.588404417037964 experiment 0.780700216497928 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC24A1 ENSG00000074621 CDS Human protein_coding chr15:65931959 chr15:65931956 synonymous SNV . 0 18 hm5C_associated_SNPs_34383 0 0 0 0 2 SLC24A1 chr15:65932041 5'GT 65932041 Upstream 86bp
chr15 73468837 73468837 1 + C T SKCM 73468840 + 73468820 73468860 41 GACTGGAAAACCAACTCCAACTGTGAAGTGGGTCAAAAATG GACTGGAAAACCAACTCTAACTGTGAAGTGGGTCAAAAATG < 41bp 1 0.195062845869618 1 0.203429788351059 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NEO1 ENSG00000067141 CDS Human protein_coding chr15:73468840 chr15:73468837 nonsynonymous SNV 0.999 4 18 hm5C_associated_SNPs_34384 0 0 1 0 2 NEO1 chr15:73468744 3'AG 73468744 Downstream 94bp
chr15 73468837 73468837 1 + C T SKCM 73468840 + 73468820 73468860 41 GACTGGAAAACCAACTCCAACTGTGAAGTGGGTCAAAAATG GACTGGAAAACCAACTCTAACTGTGAAGTGGGTCAAAAATG < 41bp 1 0.195062845869618 1 0.203429788351059 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NEO1 ENSG00000067141 CDS Human protein_coding chr15:73468840 chr15:73468837 nonsynonymous SNV 0.999 4 18 hm5C_associated_SNPs_34384 0 0 1 0 2 NEO1 chr15:73468898 5'GT 73468898 Upstream 62bp
chr17 30692381 30692381 1 + C T SKCM 30692372 + 30692352 30692392 41 TGCCCCCACCTGTTCCACGTCCTGGAATTCCTCCAATGACT TGCCCCCACCTGTTCCACGTCCTGGAATTTCTCCAATGACT < 41bp 1 0.207459694020206 1 0.449171423912048 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30692372 chr17:30692381 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_34385 0 0 1 0 1 ZNF207 chr17:30692349 3'AG 30692349 Downstream 33bp
chr8 48641592 48641592 1 + T C SKCM 48641587 + 48641567 48641607 41 CCTGGACTGCCGCTCAAGACCGCAGTGCAGAGTGAAGGTCA CCTGGACTGCCGCTCAAGACCGCAGCGCAGAGTGAAGGTCA < 41bp 1 0.631252814907715 1 0.367758333683014 experiment 0.737494370184569 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPIDR ENSG00000164808 CDS Human protein_coding chr8:48641587 chr8:48641592 nonsynonymous SNV 0.007 3 26 hm5C_associated_SNPs_34386 0 0 1 0 3 SPIDR chr8:48641495 3'AG 48641495 Downstream 98bp
chr8 48641592 48641592 1 + T C SKCM 48641587 + 48641567 48641607 41 CCTGGACTGCCGCTCAAGACCGCAGTGCAGAGTGAAGGTCA CCTGGACTGCCGCTCAAGACCGCAGCGCAGAGTGAAGGTCA < 41bp 1 0.631252814907715 1 0.367758333683014 experiment 0.737494370184569 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPIDR ENSG00000164808 CDS Human protein_coding chr8:48641587 chr8:48641592 nonsynonymous SNV 0.007 3 26 hm5C_associated_SNPs_34386 0 0 1 0 3 SPIDR chr8:48641609 5'GT 48641609 Upstream 18bp
chr8 48641592 48641592 1 + T C SKCM 48641587 + 48641567 48641607 41 CCTGGACTGCCGCTCAAGACCGCAGTGCAGAGTGAAGGTCA CCTGGACTGCCGCTCAAGACCGCAGCGCAGAGTGAAGGTCA < 41bp 1 0.631252814907715 1 0.367758333683014 experiment 0.737494370184569 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPIDR ENSG00000164808 CDS Human protein_coding chr8:48641587 chr8:48641592 nonsynonymous SNV 0.007 3 26 hm5C_associated_SNPs_34386 0 0 1 0 3 SPIDR chr8:48641664 5'GT 48641664 Upstream 73bp
chr19 11134211 11134211 1 + G A SKCM 11134199 + 11134179 11134219 41 CTTGGGGGCTTCCAGGTGGACCTGAATGAGGAGGAAACCAT CTTGGGGGCTTCCAGGTGGACCTGAATGAGGAAGAAACCAT < 41bp 1 0.26773160590423 1 0.0832529664039612 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11134199 chr19:11134211 synonymous SNV . 0 33 hm5C_associated_SNPs_34387 0 0 1 0 2 SMARCA4 chr19:11134194 3'AG 11134194 Downstream 18bp
chr19 11134211 11134211 1 + G A SKCM 11134199 + 11134179 11134219 41 CTTGGGGGCTTCCAGGTGGACCTGAATGAGGAGGAAACCAT CTTGGGGGCTTCCAGGTGGACCTGAATGAGGAAGAAACCAT < 41bp 1 0.26773160590423 1 0.0832529664039612 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11134199 chr19:11134211 synonymous SNV . 0 33 hm5C_associated_SNPs_34387 0 0 1 0 2 SMARCA4 chr19:11134307 5'GT 11134307 Upstream 97bp
chr5 176522661 176522661 1 + C T SKCM 176522651 + 176522631 176522671 41 TCCTCGGAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGG TCCTCGGAGCAGTGAGGGGCCGCTCTCCTTTCCAGTCCTGG < 41bp 1 0.138379997837695 1 0.0603960454463959 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522651 chr5:176522661 synonymous SNV . 0 31 hm5C_associated_SNPs_34388 0 0 1 0 1 FGFR4 chr5:176522724 5'GT 176522724 Upstream 64bp
chr5 176522661 176522661 1 + C T SKCM 176522657 + 176522637 176522677 41 GAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGGTCTCCT GAGCAGTGAGGGGCCGCTCTCCTTTCCAGTCCTGGTCTCCT < 41bp 1 0.0654678893676415 1 0.188446551561356 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522657 chr5:176522661 synonymous SNV . 0 25 hm5C_associated_SNPs_34389 0 0 1 0 1 FGFR4 chr5:176522724 5'GT 176522724 Upstream 64bp
chr13 99042343 99042343 1 + C T SKCM 99042342 + 99042322 99042362 41 AAACCAAAGCCCAAGCCCGTCCTCTTTAGCCGGGGGTCATC AAACCAAAGCCCAAGCCCGTCTTCTTTAGCCGGGGGTCATC < 41bp 1 0.0960227136514423 1 0.0511383712291718 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99042342 chr13:99042343 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_34390 0 0 1 0 1 FARP1 chr13:99042374 5'GT 99042374 Upstream 32bp
chr2 187519428 187519428 1 + G A SKCM 187519432 + 187519412 187519452 41 AAGGAGTACTTCCCAGGAAACTTAGTAAGTGTTCTATGAAA AAGGAGTACTTCCCAGAAAACTTAGTAAGTGTTCTATGAAA < 41bp 1 0.169154039094117 1 0.0978939533233643 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGAV ENSG00000138448 CDS Human protein_coding chr2:187519432 chr2:187519428 synonymous SNV . 0 17 hm5C_associated_SNPs_34391 0 0 1 0 2 ITGAV chr2:187519377 3'AG 187519377 Downstream 52bp
chr2 187519428 187519428 1 + G A SKCM 187519432 + 187519412 187519452 41 AAGGAGTACTTCCCAGGAAACTTAGTAAGTGTTCTATGAAA AAGGAGTACTTCCCAGAAAACTTAGTAAGTGTTCTATGAAA < 41bp 1 0.169154039094117 1 0.0978939533233643 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGAV ENSG00000138448 CDS Human protein_coding chr2:187519432 chr2:187519428 synonymous SNV . 0 17 hm5C_associated_SNPs_34391 0 0 1 0 2 ITGAV chr2:187519435 5'GT 187519435 Upstream 8bp
chr5 176522662 176522662 1 + C T SKCM 176522651 + 176522631 176522671 41 TCCTCGGAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGG TCCTCGGAGCAGTGAGGGGCCGCTCTCCTTCTCAGTCCTGG < 41bp 1 0.188647816611258 1 0.0846938490867615 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522651 chr5:176522662 nonsynonymous SNV 0.968 3 32 hm5C_associated_SNPs_34392 0 0 1 0 1 FGFR4 chr5:176522724 5'GT 176522724 Upstream 63bp
chr5 176522662 176522662 1 + C T SKCM 176522657 + 176522637 176522677 41 GAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGGTCTCCT GAGCAGTGAGGGGCCGCTCTCCTTCTCAGTCCTGGTCTCCT < 41bp 1 0.0608211114259204 1 0.0924152135848999 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522657 chr5:176522662 nonsynonymous SNV 0.968 3 26 hm5C_associated_SNPs_34393 0 0 1 0 1 FGFR4 chr5:176522724 5'GT 176522724 Upstream 63bp
chr2 187519427 187519427 1 + G A SKCM 187519432 + 187519412 187519452 41 AAGGAGTACTTCCCAGGAAACTTAGTAAGTGTTCTATGAAA AAGGAGTACTTCCCAAGAAACTTAGTAAGTGTTCTATGAAA < 41bp 1 0.141414300201 1 0.0814126133918762 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGAV ENSG00000138448 CDS Human protein_coding chr2:187519432 chr2:187519427 nonsynonymous SNV 0.915 0 16 hm5C_associated_SNPs_34394 0 0 1 0 2 ITGAV chr2:187519377 3'AG 187519377 Downstream 51bp
chr2 187519427 187519427 1 + G A SKCM 187519432 + 187519412 187519452 41 AAGGAGTACTTCCCAGGAAACTTAGTAAGTGTTCTATGAAA AAGGAGTACTTCCCAAGAAACTTAGTAAGTGTTCTATGAAA < 41bp 1 0.141414300201 1 0.0814126133918762 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGAV ENSG00000138448 CDS Human protein_coding chr2:187519432 chr2:187519427 nonsynonymous SNV 0.915 0 16 hm5C_associated_SNPs_34394 0 0 1 0 2 ITGAV chr2:187519435 5'GT 187519435 Upstream 9bp
chr17 48746561 48746561 1 + G A SKCM 48746567 + 48746547 48746587 41 CCTGTGGGCTGTGGGAAGTCCTCCCTGGTGTCTGCCCTGCT CCTGTGGGCTGTGGAAAGTCCTCCCTGGTGTCTGCCCTGCT < 41bp 1 0.358954233819815 1 0.512508034706116 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48746567 chr17:48746561 synonymous SNV . 0 15 hm5C_associated_SNPs_34395 0 0 1 0 2 ABCC3 chr17:48746501 3'AG 48746501 Downstream 61bp
chr17 48746561 48746561 1 + G A SKCM 48746567 + 48746547 48746587 41 CCTGTGGGCTGTGGGAAGTCCTCCCTGGTGTCTGCCCTGCT CCTGTGGGCTGTGGAAAGTCCTCCCTGGTGTCTGCCCTGCT < 41bp 1 0.358954233819815 1 0.512508034706116 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48746567 chr17:48746561 synonymous SNV . 0 15 hm5C_associated_SNPs_34395 0 0 1 0 2 ABCC3 chr17:48746627 5'GT 48746627 Upstream 67bp
chr19 3434310 3434310 1 + C T SKCM 3434306 + 3434286 3434326 41 ACTGGAACAGGACCCAACTTCTCCCTGGGGGAGCTGCAGGG ACTGGAACAGGACCCAACTTCTCCTTGGGGGAGCTGCAGGG < 41bp 1 0.49235454436952 1 0.931918621063232 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFIC ENSG00000141905 CDS Human protein_coding chr19:3434306 chr19:3434310 synonymous SNV . 0 25 hm5C_associated_SNPs_34397 0 0 1 0 2 NFIC chr19:3434275 3'AG 3434275 Downstream 36bp
chr19 3434310 3434310 1 + C T SKCM 3434306 + 3434286 3434326 41 ACTGGAACAGGACCCAACTTCTCCCTGGGGGAGCTGCAGGG ACTGGAACAGGACCCAACTTCTCCTTGGGGGAGCTGCAGGG < 41bp 1 0.49235454436952 1 0.931918621063232 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFIC ENSG00000141905 CDS Human protein_coding chr19:3434306 chr19:3434310 synonymous SNV . 0 25 hm5C_associated_SNPs_34397 0 0 1 0 2 NFIC chr19:3434398 5'GT 3434398 Upstream 89bp
chr10 129141980 129141980 1 + C T SKCM 129141960 + 129141940 129141980 41 GCTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTC GCTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTT < 41bp 1 0.00880210691065074 1 0.0495544373989105 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141960 chr10:129141980 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_34404 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 71bp
chr10 129141980 129141980 1 + C T SKCM 129141960 + 129141940 129141980 41 GCTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTC GCTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTT < 41bp 1 0.00880210691065074 1 0.0495544373989105 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141960 chr10:129141980 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_34404 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 31bp
chr10 129141980 129141980 1 + C T SKCM 129141961 + 129141941 129141981 41 CTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCA CTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTTA < 41bp 1 0.234945016743018 1 0.285791456699371 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141961 chr10:129141980 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_34405 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 71bp
chr10 129141980 129141980 1 + C T SKCM 129141961 + 129141941 129141981 41 CTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCA CTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTTA < 41bp 1 0.234945016743018 1 0.285791456699371 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141961 chr10:129141980 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_34405 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 31bp
chr10 129141980 129141980 1 + C T SKCM 129141964 + 129141944 129141984 41 TCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGT TCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTTAAGT < 41bp 1 0.0784518884441964 1 0.308132171630859 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141964 chr10:129141980 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_34406 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 71bp
chr10 129141980 129141980 1 + C T SKCM 129141964 + 129141944 129141984 41 TCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGT TCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTTAAGT < 41bp 1 0.0784518884441964 1 0.308132171630859 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141964 chr10:129141980 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_34406 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 31bp
chr10 129141980 129141980 1 + C T SKCM 129141967 + 129141947 129141987 41 TTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGTGCC TTACTCAAGAGTCCCTGCAACTGGAGAATTTTTTAAGTGCC < 41bp 1 0.476295085556642 1 0.753361701965332 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141967 chr10:129141980 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_34407 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 71bp
chr10 129141980 129141980 1 + C T SKCM 129141967 + 129141947 129141987 41 TTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGTGCC TTACTCAAGAGTCCCTGCAACTGGAGAATTTTTTAAGTGCC < 41bp 1 0.476295085556642 1 0.753361701965332 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141967 chr10:129141980 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_34407 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 31bp
chr10 129141980 129141980 1 + C T SKCM 129141986 + 129141966 129142006 41 ACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTA ACTGGAGAATTTTTTAAGTGCCAAGAGAGCCAAAATCCTTA < 41bp 1 0.0423535650716009 1 0.285904824733734 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141986 chr10:129141980 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_34408 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 71bp
chr10 129141980 129141980 1 + C T SKCM 129141986 + 129141966 129142006 41 ACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTA ACTGGAGAATTTTTTAAGTGCCAAGAGAGCCAAAATCCTTA < 41bp 1 0.0423535650716009 1 0.285904824733734 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141986 chr10:129141980 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_34408 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 31bp
chr10 129141980 129141980 1 + C T SKCM 129141987 + 129141967 129142007 41 CTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAA CTGGAGAATTTTTTAAGTGCCAAGAGAGCCAAAATCCTTAA < 41bp 1 0.460339554776971 1 0.513733863830566 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141987 chr10:129141980 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_34409 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 71bp
chr10 129141980 129141980 1 + C T SKCM 129141987 + 129141967 129142007 41 CTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAA CTGGAGAATTTTTTAAGTGCCAAGAGAGCCAAAATCCTTAA < 41bp 1 0.460339554776971 1 0.513733863830566 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141987 chr10:129141980 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_34409 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 31bp
chr10 129141980 129141980 1 + C T SKCM 129141995 + 129141975 129142015 41 TTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAACAAGTAAG TTTTTTAAGTGCCAAGAGAGCCAAAATCCTTAACAAGTAAG < 41bp 1 0.103612328273728 1 0.336726903915405 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141995 chr10:129141980 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_34410 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 71bp
chr10 129141980 129141980 1 + C T SKCM 129141995 + 129141975 129142015 41 TTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAACAAGTAAG TTTTTTAAGTGCCAAGAGAGCCAAAATCCTTAACAAGTAAG < 41bp 1 0.103612328273728 1 0.336726903915405 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141995 chr10:129141980 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_34410 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 31bp
chr19 42364908 42364908 1 + C T SKCM 42364907 + 42364887 42364927 41 GTCAGAGCTCTGGCAGCCTTCCTCAAAAAGTGAGTTTGGGG GTCAGAGCTCTGGCAGCCTTCTTCAAAAAGTGAGTTTGGGG < 41bp 1 0.449232997236744 1 0.846163511276245 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42364907 chr19:42364908 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_34411 0 0 1 0 2 RPS19 chr19:42364845 3'AG 42364845 Downstream 64bp
chr19 42364908 42364908 1 + C T SKCM 42364907 + 42364887 42364927 41 GTCAGAGCTCTGGCAGCCTTCCTCAAAAAGTGAGTTTGGGG GTCAGAGCTCTGGCAGCCTTCTTCAAAAAGTGAGTTTGGGG < 41bp 1 0.449232997236744 1 0.846163511276245 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42364907 chr19:42364908 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_34411 0 0 1 0 2 RPS19 chr19:42364915 5'GT 42364915 Upstream 8bp
chr19 4442295 4442295 1 + G A SKCM 4442277 + 4442257 4442297 41 ATGGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAGAGGA ATGGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAGAAGA < 41bp 1 0.641053969491485 1 0.222248464822769 experiment 0.717892061017031 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442277 chr19:4442295 synonymous SNV . 0 39 hm5C_associated_SNPs_34413 0 0 1 0 2 CHAF1A chr19:4442242 3'AG 4442242 Downstream 54bp
chr19 4442295 4442295 1 + G A SKCM 4442277 + 4442257 4442297 41 ATGGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAGAGGA ATGGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAGAAGA < 41bp 1 0.641053969491485 1 0.222248464822769 experiment 0.717892061017031 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442277 chr19:4442295 synonymous SNV . 0 39 hm5C_associated_SNPs_34413 0 0 1 0 2 CHAF1A chr19:4442338 5'GT 4442338 Upstream 44bp
chr19 4442295 4442295 1 + G A SKCM 4442279 + 4442259 4442299 41 GGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAGAGGAGG GGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAGAAGAGG < 41bp 1 0.705307069534922 1 0.698934674263 experiment 0.589385860930156 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442279 chr19:4442295 synonymous SNV . 0 37 hm5C_associated_SNPs_34414 0 0 1 0 2 CHAF1A chr19:4442242 3'AG 4442242 Downstream 54bp
chr19 4442295 4442295 1 + G A SKCM 4442279 + 4442259 4442299 41 GGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAGAGGAGG GGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAGAAGAGG < 41bp 1 0.705307069534922 1 0.698934674263 experiment 0.589385860930156 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442279 chr19:4442295 synonymous SNV . 0 37 hm5C_associated_SNPs_34414 0 0 1 0 2 CHAF1A chr19:4442338 5'GT 4442338 Upstream 44bp
chr5 33463925 33463925 1 + C T SKCM 33463905 + 33463885 33463925 41 AATGGTAGTTCCAGTGGGACCAACCTGTGATGAATATGCCC AATGGTAGTTCCAGTGGGACCAACCTGTGATGAATATGCCT < 41bp 1 0.279796820893332 1 0.568742036819458 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33463905 chr5:33463925 stopgain 1.000 1 41 hm5C_associated_SNPs_34415 0 0 1 0 2 TARS chr5:33463858 3'AG 33463858 Downstream 68bp
chr5 33463925 33463925 1 + C T SKCM 33463905 + 33463885 33463925 41 AATGGTAGTTCCAGTGGGACCAACCTGTGATGAATATGCCC AATGGTAGTTCCAGTGGGACCAACCTGTGATGAATATGCCT < 41bp 1 0.279796820893332 1 0.568742036819458 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33463905 chr5:33463925 stopgain 1.000 1 41 hm5C_associated_SNPs_34415 0 0 1 0 2 TARS chr5:33463930 5'GT 33463930 Upstream 6bp
chr12 57600317 57600317 1 + C T SKCM 57600323 + 57600303 57600343 41 AGCCTGTTCCCCGGCCACCCCCATTCGGCTTACGAGCAGGC AGCCTGTTCCCCGGTCACCCCCATTCGGCTTACGAGCAGGC < 41bp 1 0.015775631628368 1 0.141361892223358 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57600323 chr12:57600317 synonymous SNV . 0 15 hm5C_associated_SNPs_34416 0 0 0 0 1 LRP1 chr12:57600256 3'AG 57600256 Downstream 62bp
chr17 7476169 7476169 1 + A T SKCM 7476180 + 7476160 7476200 41 ATGTCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCA ATGTCTGCGTGCCAGGATTCCCGGTAAGAAAGGCATTTGCA < 41bp 1 0.374378481521248 1 0.146753877401352 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7476180 chr17:7476169 nonsynonymous SNV 0.996 1 10 hm5C_associated_SNPs_34417 0 0 1 0 1 EIF4A1 chr17:7476182 5'GT 7476182 Upstream 14bp
chr17 7476169 7476169 1 + A T SKCM 7476181 + 7476161 7476201 41 TGTCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCAA TGTCTGCGTGCCAGGATTCCCGGTAAGAAAGGCATTTGCAA < 41bp 1 0.710966823890865 1 0.441888242959976 experiment 0.57806635221827 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7476181 chr17:7476169 nonsynonymous SNV 0.996 1 9 hm5C_associated_SNPs_34418 0 0 1 0 1 EIF4A1 chr17:7476182 5'GT 7476182 Upstream 14bp
chr12 57600318 57600318 1 + C T SKCM 57600323 + 57600303 57600343 41 AGCCTGTTCCCCGGCCACCCCCATTCGGCTTACGAGCAGGC AGCCTGTTCCCCGGCTACCCCCATTCGGCTTACGAGCAGGC < 41bp 1 0.0165542681828345 1 0.206179916858673 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57600323 chr12:57600318 nonsynonymous SNV 0.737 1 16 hm5C_associated_SNPs_34419 0 0 0 0 1 LRP1 chr12:57600256 3'AG 57600256 Downstream 63bp
chr16 70163017 70163017 1 + C T SKCM 70163015 + 70162995 70163035 41 CTTGCCCTGGCAAGTGCTGCCTCCCAAAATGGTGAGCAGGT CTTGCCCTGGCAAGTGCTGCCTTCCAAAATGGTGAGCAGGT < 41bp 1 0.0614025701454781 1 0.0637567639350891 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70163015 chr16:70163017 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_34420 0 0 0 0 1 PDPR chr16:70163025 5'GT 70163025 Upstream 9bp
chr8 26227663 26227663 1 + G A SKCM 26227656 + 26227636 26227676 41 GTCTATTTTCACAGTGTTGTCATGACTGGATCTTACAATAA GTCTATTTTCACAGTGTTGTCATGACTAGATCTTACAATAA < 41bp 1 0.443778879160218 1 0.175061166286469 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26227656 chr8:26227663 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_34421 0 0 1 0 1 PPP2R2A chr8:26227650 3'AG 26227650 Downstream 14bp
chr5 147498040 147498040 1 + G C SKCM 147498044 + 147498024 147498064 41 CAAATGAAAAATGGAAGACTCAGCTGTACTCGGGAGAGTGA CAAATGAAAAATGGAACACTCAGCTGTACTCGGGAGAGTGA < 41bp 1 0.429307329834696 1 0.513646900653839 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147498044 chr5:147498040 nonsynonymous SNV 0.963 0 17 hm5C_associated_SNPs_34422 0 0 0 0 2 SPINK5 chr5:147498000 3'AG 147498000 Downstream 41bp
chr5 147498040 147498040 1 + G C SKCM 147498044 + 147498024 147498064 41 CAAATGAAAAATGGAAGACTCAGCTGTACTCGGGAGAGTGA CAAATGAAAAATGGAACACTCAGCTGTACTCGGGAGAGTGA < 41bp 1 0.429307329834696 1 0.513646900653839 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147498044 chr5:147498040 nonsynonymous SNV 0.963 0 17 hm5C_associated_SNPs_34422 0 0 0 0 2 SPINK5 chr5:147498127 5'GT 147498127 Upstream 88bp
chr12 120875936 120875936 1 + G A SKCM 120875925 + 120875905 120875945 41 GGCGCTGCGGCAGTCCAGATCAAAAATGGCGGTAGTTGGTG GGCGCTGCGGCAGTCCAGATCAAAAATGGCGATAGTTGGTG < 41bp 1 0.698775397794722 1 0.234906166791916 experiment 0.602449204410556 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COX6A1 ENSG00000111775 CDS Human other chr12:120875925 chr12:120875936 nonsynonymous SNV 0.012 0 32 hm5C_associated_SNPs_34423 0 0 1 0 1 COX6A1 chr12:120876032 5'GT 120876032 Upstream 97bp
chr11 66258775 66258775 1 + G C SKCM 66258782 + 66258762 66258802 41 AGCTATGAATTCCGGGGAAGCCCTTTCCAGGTGACCCGGGG AGCTATGAATTCCCGGGAAGCCCTTTCCAGGTGACCCGGGG < 41bp 1 0.123233760585334 1 0.115684568881989 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66258782 chr11:66258775 nonsynonymous SNV 0.939 0 14 hm5C_associated_SNPs_34424 0 0 1 0 2 DPP3 chr11:66258724 3'AG 66258724 Downstream 52bp
chr11 66258775 66258775 1 + G C SKCM 66258782 + 66258762 66258802 41 AGCTATGAATTCCGGGGAAGCCCTTTCCAGGTGACCCGGGG AGCTATGAATTCCCGGGAAGCCCTTTCCAGGTGACCCGGGG < 41bp 1 0.123233760585334 1 0.115684568881989 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66258782 chr11:66258775 nonsynonymous SNV 0.939 0 14 hm5C_associated_SNPs_34424 0 0 1 0 2 DPP3 chr11:66258854 5'GT 66258854 Upstream 80bp
chr16 75682397 75682397 1 + C T SKCM 75682389 + 75682369 75682409 41 CTGGGGGACGCGCCGGTGAGCCCCTCCTCCCAGAAGCTCAA CTGGGGGACGCGCCGGTGAGCCCCTCCTTCCAGAAGCTCAA < 41bp 1 0.326922541639028 1 0.0962905287742615 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TERF2IP ENSG00000166848 CDS Human protein_coding chr16:75682389 chr16:75682397 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_34428 0 0 1 0 1 TERF2IP chr16:75682450 5'GT 75682450 Upstream 54bp
chr16 75682397 75682397 1 + C T SKCM 75682394 + 75682374 75682414 41 GGACGCGCCGGTGAGCCCCTCCTCCCAGAAGCTCAAGCGGA GGACGCGCCGGTGAGCCCCTCCTTCCAGAAGCTCAAGCGGA < 41bp 1 0.043554427999303 1 0.747741460800171 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TERF2IP ENSG00000166848 CDS Human protein_coding chr16:75682394 chr16:75682397 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_34429 0 0 1 0 1 TERF2IP chr16:75682450 5'GT 75682450 Upstream 54bp
chr19 42848889 42848889 1 + C T SKCM 42848907 + 42848887 42848927 41 TTCGTCACGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT TTTGTCACGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT < 41bp 1 0.34670506779496 1 0.201928704977036 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42848907 chr19:42848889 synonymous SNV . 0 3 hm5C_associated_SNPs_34430 0 0 1 0 2 MEGF8 chr19:42848822 3'AG 42848822 Downstream 68bp
chr19 42848889 42848889 1 + C T SKCM 42848907 + 42848887 42848927 41 TTCGTCACGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT TTTGTCACGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT < 41bp 1 0.34670506779496 1 0.201928704977036 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42848907 chr19:42848889 synonymous SNV . 0 3 hm5C_associated_SNPs_34430 0 0 1 0 2 MEGF8 chr19:42848985 5'GT 42848985 Upstream 97bp
chr2 32828135 32828135 1 + C A SKCM 32828127 + 32828107 32828147 41 GACCAGAAGAGAAGTGGAATCCTCAGACCTCAAGCTTTTTG GACCAGAAGAGAAGTGGAATCCTCAGACATCAAGCTTTTTG < 41bp 1 0.105514002282427 1 0.0665567815303802 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32828127 chr2:32828135 synonymous SNV . 0 29 hm5C_associated_SNPs_34431 0 0 1 0 2 BIRC6 chr2:32828073 3'AG 32828073 Downstream 63bp
chr2 32828135 32828135 1 + C A SKCM 32828127 + 32828107 32828147 41 GACCAGAAGAGAAGTGGAATCCTCAGACCTCAAGCTTTTTG GACCAGAAGAGAAGTGGAATCCTCAGACATCAAGCTTTTTG < 41bp 1 0.105514002282427 1 0.0665567815303802 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32828127 chr2:32828135 synonymous SNV . 0 29 hm5C_associated_SNPs_34431 0 0 1 0 2 BIRC6 chr2:32828150 5'GT 32828150 Upstream 16bp
chr19 40704302 40704302 1 + G A SKCM 40704290 + 40704270 40704310 41 CCCACCCCACAGTCCTGATCCTGGAGGCCATCGAGAACCAC CCCACCCCACAGTCCTGATCCTGGAGGCCATCAAGAACCAC < 41bp 1 0.727715588361664 1 0.608693838119507 experiment 0.544568823276671 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40704290 chr19:40704302 nonsynonymous SNV 0.999 3 33 hm5C_associated_SNPs_34440 0 0 0 0 1 MAP3K10 chr19:40704282 3'AG 40704282 Downstream 21bp
chr19 40704302 40704302 1 + G A SKCM 40704298 + 40704278 40704318 41 ACAGTCCTGATCCTGGAGGCCATCGAGAACCACAACCTCGC ACAGTCCTGATCCTGGAGGCCATCAAGAACCACAACCTCGC < 41bp 1 0.230002726348736 1 0.0886185169219971 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40704298 chr19:40704302 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_34441 0 0 0 0 1 MAP3K10 chr19:40704282 3'AG 40704282 Downstream 21bp
chr12 104492131 104492131 1 + C T SKCM 104492140 + 104492120 104492160 41 GAAAGAGACTCCTTCAAATCCAGTGGCCACAGTGAAAGCGG GAAAGAGACTCTTTCAAATCCAGTGGCCACAGTGAAAGCGG < 41bp 1 0.448530188773693 1 0.363799870014191 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104492140 chr12:104492131 nonsynonymous SNV 1.000 0 12 hm5C_associated_SNPs_34447 0 0 1 0 1 HCFC2 chr12:104492121 3'AG 104492121 Downstream 11bp
chr11 108559732 108559732 1 + C T SKCM 108559748 + 108559728 108559768 41 ATTCCTTTTTGAGAAGCCATCTGAAGAAGAAGAGCATTGTA ATTCTTTTTTGAGAAGCCATCTGAAGAAGAAGAGCATTGTA < 41bp 1 0.613630332547168 1 0.868967175483704 experiment 0.772739334905665 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX10 ENSG00000178105 CDS Human protein_coding chr11:108559748 chr11:108559732 synonymous SNV . 0 5 hm5C_associated_SNPs_34448 0 0 1 0 2 DDX10 chr11:108559663 3'AG 108559663 Downstream 70bp
chr11 108559732 108559732 1 + C T SKCM 108559748 + 108559728 108559768 41 ATTCCTTTTTGAGAAGCCATCTGAAGAAGAAGAGCATTGTA ATTCTTTTTTGAGAAGCCATCTGAAGAAGAAGAGCATTGTA < 41bp 1 0.613630332547168 1 0.868967175483704 experiment 0.772739334905665 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX10 ENSG00000178105 CDS Human protein_coding chr11:108559748 chr11:108559732 synonymous SNV . 0 5 hm5C_associated_SNPs_34448 0 0 1 0 2 DDX10 chr11:108559789 5'GT 108559789 Upstream 58bp
chr20 30381757 30381757 1 + C T SKCM 30381750 + 30381730 30381770 41 CAAGAACTGTGGAAATATGCCCTTTCTCGTTTGATTCTCGA CAAGAACTGTGGAAATATGCCCTTTCTTGTTTGATTCTCGA < 41bp 1 0.0217362454242113 1 0.0465232729911804 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30381750 chr20:30381757 nonsynonymous SNV 0.988 4 28 hm5C_associated_SNPs_34449 0 0 1 0 1 TPX2 chr20:30381827 5'GT 30381827 Upstream 71bp
chr20 30381757 30381757 1 + C T SKCM 30381751 + 30381731 30381771 41 AAGAACTGTGGAAATATGCCCTTTCTCGTTTGATTCTCGAG AAGAACTGTGGAAATATGCCCTTTCTTGTTTGATTCTCGAG < 41bp 1 0.0398446610596595 1 0.0785481035709381 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30381751 chr20:30381757 nonsynonymous SNV 0.988 4 27 hm5C_associated_SNPs_34450 0 0 1 0 1 TPX2 chr20:30381827 5'GT 30381827 Upstream 71bp
chr11 65829377 65829377 1 + C T SKCM 65829381 + 65829361 65829401 41 GAATGCCCACAAGGTCCCTCCCCCATGGCTGATTGCCATGC GAATGCCCACAAGGTCTCTCCCCCATGGCTGATTGCCATGC < 41bp 1 0.575179007214974 1 0.363151490688324 experiment 0.849641985570053 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65829381 chr11:65829377 nonsynonymous SNV 0.975 4 17 hm5C_associated_SNPs_34452 0 0 1 0 2 SF3B2 chr11:65829362 3'AG 65829362 Downstream 16bp
chr11 65829377 65829377 1 + C T SKCM 65829381 + 65829361 65829401 41 GAATGCCCACAAGGTCCCTCCCCCATGGCTGATTGCCATGC GAATGCCCACAAGGTCTCTCCCCCATGGCTGATTGCCATGC < 41bp 1 0.575179007214974 1 0.363151490688324 experiment 0.849641985570053 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65829381 chr11:65829377 nonsynonymous SNV 0.975 4 17 hm5C_associated_SNPs_34452 0 0 1 0 2 SF3B2 chr11:65829469 5'GT 65829469 Upstream 93bp
chrX 152958983 152958983 1 + C T SKCM 152958977 + 152958957 152958997 41 TTCTTTGCTGGCTTCGTGGTCTTCTCCATCCTGGGCTTCAT TTCTTTGCTGGCTTCGTGGTCTTCTCTATCCTGGGCTTCAT < 41bp 1 0.145062560809125 1 0.0418918132781982 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958977 chrX:152958983 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_34453 0 0 1 0 3 SLC6A8 chrX:152958917 3'AG 152958917 Downstream 67bp
chrX 152958983 152958983 1 + C T SKCM 152958977 + 152958957 152958997 41 TTCTTTGCTGGCTTCGTGGTCTTCTCCATCCTGGGCTTCAT TTCTTTGCTGGCTTCGTGGTCTTCTCTATCCTGGGCTTCAT < 41bp 1 0.145062560809125 1 0.0418918132781982 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958977 chrX:152958983 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_34453 0 0 1 0 3 SLC6A8 chrX:152958947 3'AG 152958947 Downstream 37bp
chrX 152958983 152958983 1 + C T SKCM 152958977 + 152958957 152958997 41 TTCTTTGCTGGCTTCGTGGTCTTCTCCATCCTGGGCTTCAT TTCTTTGCTGGCTTCGTGGTCTTCTCTATCCTGGGCTTCAT < 41bp 1 0.145062560809125 1 0.0418918132781982 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958977 chrX:152958983 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_34453 0 0 1 0 3 SLC6A8 chrX:152959041 5'GT 152959041 Upstream 59bp
chr12 123028725 123028725 1 + C T SKCM 123028737 + 123028717 123028757 41 AATCAAGTCCAGTTTTATTTCTACTGAAAATTATCATACTC AATCAAGTTCAGTTTTATTTCTACTGAAAATTATCATACTC < 41bp 1 0.306175193916776 1 0.528101027011871 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123028737 chr12:123028725 nonsynonymous SNV 0.985 1 9 hm5C_associated_SNPs_34454 0 0 1 0 2 KNTC1 chr12:123028706 3'AG 123028706 Downstream 20bp
chr12 123028725 123028725 1 + C T SKCM 123028737 + 123028717 123028757 41 AATCAAGTCCAGTTTTATTTCTACTGAAAATTATCATACTC AATCAAGTTCAGTTTTATTTCTACTGAAAATTATCATACTC < 41bp 1 0.306175193916776 1 0.528101027011871 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123028737 chr12:123028725 nonsynonymous SNV 0.985 1 9 hm5C_associated_SNPs_34454 0 0 1 0 2 KNTC1 chr12:123028816 5'GT 123028816 Upstream 92bp
chr8 56864630 56864630 1 + G A SKCM 56864624 + 56864604 56864644 41 TAATGGGGGCTATTACATCTCTCCACGAATCACTTTTCCCT TAATGGGGGCTATTACATCTCTCCACAAATCACTTTTCCCT < 41bp 1 0.726509685934057 1 0.903475284576416 experiment 0.546980628131887 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56864624 chr8:56864630 nonsynonymous SNV 0.995 4 27 hm5C_associated_SNPs_34456 0 0 1 0 1 LYN chr8:56864674 5'GT 56864674 Upstream 45bp
chr7 141341091 141341091 1 + C T SKCM 141341103 + 141341083 141341123 41 CACGGGACCTACAGAGAGACCTCCCAATGAACCAGAGGAGA CACGGGACTTACAGAGAGACCTCCCAATGAACCAGAGGAGA < 41bp 1 0.321703754871213 1 0.099267452955246 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGK ENSG00000006530 CDS Human protein_coding chr7:141341103 chr7:141341091 nonsynonymous SNV 0.998 4 9 hm5C_associated_SNPs_34466 0 0 1 0 1 AGK chr7:141341048 3'AG 141341048 Downstream 44bp
chr2 121554972 121554972 1 + C T SKCM 121554962 + 121554942 121554982 41 AAAAGTGGGATCCTGGAGGCCGCTGGCTTCCCCGACCCGGG AAAAGTGGGATCCTGGAGGCCGCTGGCTTCTCCGACCCGGG < 41bp 1 0.258036618691654 1 0.546629905700684 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GLI2 ENSG00000074047 CDS Human protein_coding chr2:121554962 chr2:121554972 nonsynonymous SNV 0.872 0 31 hm5C_associated_SNPs_34467 0 0 0 0 1 GLI2 chr2:121555044 5'GT 121555044 Upstream 73bp
chr22 24466778 24466778 1 + C T SKCM 24466762 + 24466742 24466782 41 CTGTACTAGGACTCCTTGCTCCGGCTGAAGGACTATCGGCA CTGTACTAGGACTCCTTGCTCCGGCTGAAGGACTATTGGCA < 41bp 1 0.16064288036865 1 0.84731388092041 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24466762 chr22:24466778 nonsynonymous SNV 0.310 2 37 hm5C_associated_SNPs_34468 0 0 1 0 1 CABIN1 chr22:24466751 3'AG 24466751 Downstream 28bp
chr22 24466778 24466778 1 + C T SKCM 24466763 + 24466743 24466783 41 TGTACTAGGACTCCTTGCTCCGGCTGAAGGACTATCGGCAG TGTACTAGGACTCCTTGCTCCGGCTGAAGGACTATTGGCAG < 41bp 1 0.354528871434959 1 0.669229090213776 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24466763 chr22:24466778 nonsynonymous SNV 0.310 2 36 hm5C_associated_SNPs_34469 0 0 1 0 1 CABIN1 chr22:24466751 3'AG 24466751 Downstream 28bp
chr22 24466778 24466778 1 + C T SKCM 24466766 + 24466746 24466786 41 ACTAGGACTCCTTGCTCCGGCTGAAGGACTATCGGCAGTGT ACTAGGACTCCTTGCTCCGGCTGAAGGACTATTGGCAGTGT < 41bp 1 0.488989648999341 1 0.308522999286652 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24466766 chr22:24466778 nonsynonymous SNV 0.310 2 33 hm5C_associated_SNPs_34470 0 0 1 0 1 CABIN1 chr22:24466751 3'AG 24466751 Downstream 28bp
chr1 116929972 116929972 1 + C T SKCM 116929971 + 116929951 116929991 41 TGGTCCCAACGCCCTCACTCCCCCTCCCACTACTCCTGAAT TGGTCCCAACGCCCTCACTCCTCCTCCCACTACTCCTGAAT < 41bp 1 0.246271431787008 1 0.272294819355011 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116929971 chr1:116929972 synonymous SNV . 0 22 hm5C_associated_SNPs_34471 0 0 1 0 1 ATP1A1 chr1:116929910 3'AG 116929910 Downstream 63bp
chr17 66038262 66038262 1 + C T SKCM 66038276 + 66038256 66038296 41 TTGATTCCGAAATTTGTGTCCTTCTTGGGCAGAACTGATTG TTGATTTCGAAATTTGTGTCCTTCTTGGGCAGAACTGATTG < 41bp 1 0.224352141118662 1 0.0919450223445892 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66038276 chr17:66038262 nonsynonymous SNV 0.997 1 7 hm5C_associated_SNPs_34472 0 0 1 0 1 KPNA2 chr17:66038201 3'AG 66038201 Downstream 62bp
chr4 144390252 144390252 1 + G A SKCM 144390263 + 144390243 144390283 41 TGACCAACAGAAGACCTTGGCTCTAAAGAGTACCCGGGAAG TGACCAACAAAAGACCTTGGCTCTAAAGAGTACCCGGGAAG < 41bp 1 0.548301143686773 1 0.779935598373413 experiment 0.903397712626454 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control GAB1 ENSG00000109458 CDS Human protein_coding chr4:144390263 chr4:144390252 synonymous SNV . 0 10 hm5C_associated_SNPs_34473 0 0 1 0 1 GAB1 chr4:144390184 3'AG 144390184 Downstream 69bp
chr7 44801181 44801181 1 + C T SKCM 44801172 + 44801152 44801192 41 TTCCAGCTGCGAGACTCAGTCTACAAGACCCTGATAATGAG TTCCAGCTGCGAGACTCAGTCTACAAGACTCTGATAATGAG < 41bp 1 0.574481016005192 1 0.875350117683411 experiment 0.851037967989616 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44801172 chr7:44801181 synonymous SNV . 0 30 hm5C_associated_SNPs_34477 0 0 1 0 1 ZMIZ2 chr7:44801192 5'GT 44801192 Upstream 12bp
chr17 78022533 78022533 1 + C T SKCM 78022532 + 78022512 78022552 41 GGAAGCAGAAGACGAAGGGTCCCAGCTGGTGGTTTTGGACC GGAAGCAGAAGACGAAGGGTCTCAGCTGGTGGTTTTGGACC < 41bp 1 0.468659264582778 1 0.471945643424988 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78022532 chr17:78022533 synonymous SNV . 0 22 hm5C_associated_SNPs_34479 0 0 1 0 1 CCDC40 chr17:78022560 5'GT 78022560 Upstream 28bp
chr17 79080642 79080642 1 + C T SKCM 79080643 + 79080623 79080663 41 CGCCGCCTCCCGGGCCTTCCCCGCCCAGACGGCCAGCGGCT CGCCGCCTCCCGGGCCTTCTCCGCCCAGACGGCCAGCGGCT < 41bp 1 0.502996867434134 1 0.436699509620667 experiment 0.994006265131732 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080643 chr17:79080642 nonsynonymous SNV 0.433 0 20 hm5C_associated_SNPs_34480 0 0 1 0 2 BAIAP2 chr17:79080545 3'AG 79080545 Downstream 98bp
chr17 79080642 79080642 1 + C T SKCM 79080643 + 79080623 79080663 41 CGCCGCCTCCCGGGCCTTCCCCGCCCAGACGGCCAGCGGCT CGCCGCCTCCCGGGCCTTCTCCGCCCAGACGGCCAGCGGCT < 41bp 1 0.502996867434134 1 0.436699509620667 experiment 0.994006265131732 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080643 chr17:79080642 nonsynonymous SNV 0.433 0 20 hm5C_associated_SNPs_34480 0 0 1 0 2 BAIAP2 chr17:79080707 5'GT 79080707 Upstream 66bp
chr17 79080642 79080642 1 + C T SKCM 79080644 + 79080624 79080664 41 GCCGCCTCCCGGGCCTTCCCCGCCCAGACGGCCAGCGGCTT GCCGCCTCCCGGGCCTTCTCCGCCCAGACGGCCAGCGGCTT < 41bp 1 0.56757357533655 1 0.222907245159149 experiment 0.8648528493269 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080644 chr17:79080642 nonsynonymous SNV 0.433 0 19 hm5C_associated_SNPs_34481 0 0 1 0 2 BAIAP2 chr17:79080545 3'AG 79080545 Downstream 98bp
chr17 79080642 79080642 1 + C T SKCM 79080644 + 79080624 79080664 41 GCCGCCTCCCGGGCCTTCCCCGCCCAGACGGCCAGCGGCTT GCCGCCTCCCGGGCCTTCTCCGCCCAGACGGCCAGCGGCTT < 41bp 1 0.56757357533655 1 0.222907245159149 experiment 0.8648528493269 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080644 chr17:79080642 nonsynonymous SNV 0.433 0 19 hm5C_associated_SNPs_34481 0 0 1 0 2 BAIAP2 chr17:79080707 5'GT 79080707 Upstream 66bp
chr13 99047564 99047564 1 + G A SKCM 99047580 + 99047560 99047600 41 CGAAGGTTTCCGCCGGGGAGCCGGGGTCGCACCCGAGCCCT CGAAAGTTTCCGCCGGGGAGCCGGGGTCGCACCCGAGCCCT < 41bp 1 0.716562774386916 1 0.748573899269104 experiment 0.566874451226167 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99047580 chr13:99047564 synonymous SNV . 0 5 hm5C_associated_SNPs_34482 0 0 0 0 1 FARP1 chr13:99047481 3'AG 99047481 Downstream 84bp
chr1 31896635 31896635 1 + C T SKCM 31896651 + 31896631 31896671 41 TCTTCCTCTTCCTGGGGGTGCTGGTGTCCATCATTATGCTG TCTTTCTCTTCCTGGGGGTGCTGGTGTCCATCATTATGCTG < 41bp 1 0.580078278636969 1 0.259155482053757 experiment 0.839843442726062 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31896651 chr1:31896635 synonymous SNV . 0 5 hm5C_associated_SNPs_34483 0 0 1 0 2 SERINC2 chr1:31896540 3'AG 31896540 Downstream 96bp
chr1 31896635 31896635 1 + C T SKCM 31896651 + 31896631 31896671 41 TCTTCCTCTTCCTGGGGGTGCTGGTGTCCATCATTATGCTG TCTTTCTCTTCCTGGGGGTGCTGGTGTCCATCATTATGCTG < 41bp 1 0.580078278636969 1 0.259155482053757 experiment 0.839843442726062 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31896651 chr1:31896635 synonymous SNV . 0 5 hm5C_associated_SNPs_34483 0 0 1 0 2 SERINC2 chr1:31896701 5'GT 31896701 Upstream 67bp
chr20 35176481 35176481 1 + C T SKCM 35176493 + 35176473 35176513 41 AGCGAGGCCCCGGGGCCCATCAACTTCACCATGTTCCTCAC AGCGAGGCTCCGGGGCCCATCAACTTCACCATGTTCCTCAC < 41bp 1 0.5735222659213 1 0.809164702892303 experiment 0.852955468157401 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MYL9 ENSG00000101335 CDS Human protein_coding chr20:35176493 chr20:35176481 synonymous SNV . 0 9 hm5C_associated_SNPs_34484 0 0 0 0 1 MYL9 chr20:35176435 3'AG 35176435 Downstream 47bp
chr13 99047565 99047565 1 + G A SKCM 99047580 + 99047560 99047600 41 CGAAGGTTTCCGCCGGGGAGCCGGGGTCGCACCCGAGCCCT CGAAGATTTCCGCCGGGGAGCCGGGGTCGCACCCGAGCCCT < 41bp 1 0.721710480489525 1 0.813041388988495 experiment 0.556579039020951 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99047580 chr13:99047565 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_34485 0 0 1 0 1 FARP1 chr13:99047481 3'AG 99047481 Downstream 85bp
chr6 30886611 30886611 1 + G A SKCM 30886601 + 30886581 30886621 41 AGTGTTTAAATGTTTATCTTCAGATGCAGAGGTTGTGGTAG AGTGTTTAAATGTTTATCTTCAGATGCAGAAGTTGTGGTAG < 41bp 1 0.184754057617783 1 0.613316476345062 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VARS2 ENSG00000137411 CDS Human protein_coding chr6:30886601 chr6:30886611 synonymous SNV . 0 31 hm5C_associated_SNPs_34487 0 0 1 0 2 VARS2 chr6:30886604 3'AG 30886604 Downstream 8bp
chr6 30886611 30886611 1 + G A SKCM 30886601 + 30886581 30886621 41 AGTGTTTAAATGTTTATCTTCAGATGCAGAGGTTGTGGTAG AGTGTTTAAATGTTTATCTTCAGATGCAGAAGTTGTGGTAG < 41bp 1 0.184754057617783 1 0.613316476345062 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VARS2 ENSG00000137411 CDS Human protein_coding chr6:30886601 chr6:30886611 synonymous SNV . 0 31 hm5C_associated_SNPs_34487 0 0 1 0 2 VARS2 chr6:30886692 5'GT 30886692 Upstream 82bp
chr7 142459658 142459658 1 + C T SKCM 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTGAGACTGGGAGAGCACAACATTGAAGTCCTGGAGGGGAA < 41bp 1 0.500756029705766 1 0.126122623682022 experiment 0.998487940588467 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459658 synonymous SNV 0.234 0 24 hm5C_associated_SNPs_34488 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 34bp
chr7 142459658 142459658 1 + C T SKCM 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCACAACATTGAAGTCCTGGAGGGGAATGAGCAGTT < 41bp 1 0.529596501038295 1 0.226430237293243 experiment 0.940806997923411 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459658 synonymous SNV 0.234 0 15 hm5C_associated_SNPs_34489 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 34bp
chr2 102486842 102486842 1 + A G SKCM 102486859 + 102486839 102486879 41 ATGACCCCATCCAAGGAGGGCACTCTAATCGTCCGCCAGGT ATGGCCCCATCCAAGGAGGGCACTCTAATCGTCCGCCAGGT < 41bp 1 0.109783164032313 1 0.0690830051898956 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102486859 chr2:102486842 nonsynonymous SNV 0.999 3 4 hm5C_associated_SNPs_34490 0 0 1 0 2 MAP4K4 chr2:102486757 3'AG 102486757 Downstream 86bp
chr2 102486842 102486842 1 + A G SKCM 102486859 + 102486839 102486879 41 ATGACCCCATCCAAGGAGGGCACTCTAATCGTCCGCCAGGT ATGGCCCCATCCAAGGAGGGCACTCTAATCGTCCGCCAGGT < 41bp 1 0.109783164032313 1 0.0690830051898956 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102486859 chr2:102486842 nonsynonymous SNV 0.999 3 4 hm5C_associated_SNPs_34490 0 0 1 0 2 MAP4K4 chr2:102486877 5'GT 102486877 Upstream 36bp
chr19 13004396 13004396 1 + C T SKCM 13004401 + 13004381 13004421 41 CGATGAGTGTCCAGTCCTCCCTCGTCATGCACCCTATCTAT CGATGAGTGTCCAGTTCTCCCTCGTCATGCACCCTATCTAT < 41bp 1 0.709927243884165 1 0.044776439666748 experiment 0.580145512231671 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13004401 chr19:13004396 nonsynonymous SNV 0.988 5 16 hm5C_associated_SNPs_34493 0 0 0 0 2 GCDH chr19:13004297 3'AG 13004297 Downstream 100bp
chr19 13004396 13004396 1 + C T SKCM 13004401 + 13004381 13004421 41 CGATGAGTGTCCAGTCCTCCCTCGTCATGCACCCTATCTAT CGATGAGTGTCCAGTTCTCCCTCGTCATGCACCCTATCTAT < 41bp 1 0.709927243884165 1 0.044776439666748 experiment 0.580145512231671 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13004401 chr19:13004396 nonsynonymous SNV 0.988 5 16 hm5C_associated_SNPs_34493 0 0 0 0 2 GCDH chr19:13004467 5'GT 13004467 Upstream 72bp
chr16 57113024 57113024 1 + C T SKCM 57113028 + 57113008 57113048 41 CAGGCCCTGGATGGATCCCCCCATTTGGAAGAGATCAGGTA CAGGCCCTGGATGGATTCCCCCATTTGGAAGAGATCAGGTA < 41bp 1 0.0833839959191437 1 0.0408206582069397 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57113028 chr16:57113024 nonsynonymous SNV 0.589 0 17 hm5C_associated_SNPs_34495 0 0 0 0 2 NLRC5 chr16:57112962 3'AG 57112962 Downstream 63bp
chr16 57113024 57113024 1 + C T SKCM 57113028 + 57113008 57113048 41 CAGGCCCTGGATGGATCCCCCCATTTGGAAGAGATCAGGTA CAGGCCCTGGATGGATTCCCCCATTTGGAAGAGATCAGGTA < 41bp 1 0.0833839959191437 1 0.0408206582069397 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57113028 chr16:57113024 nonsynonymous SNV 0.589 0 17 hm5C_associated_SNPs_34495 0 0 0 0 2 NLRC5 chr16:57113045 5'GT 57113045 Upstream 22bp
chr6 26091745 26091745 1 + T C SKCM 26091728 + 26091708 26091748 41 GGAAAGGCACAAGATTCGGGCCAGGCAGAACAGGGCCTACC GGAAAGGCACAAGATTCGGGCCAGGCAGAACAGGGCCCACC < 41bp 1 0.352485699111034 1 0.234200030565262 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26091728 chr6:26091745 nonsynonymous SNV 0.922 3 38 hm5C_associated_SNPs_34496 0 0 0 0 1 HFE chr6:26091817 5'GT 26091817 Upstream 73bp
chr6 26091745 26091745 1 + T C SKCM 26091729 + 26091709 26091749 41 GAAAGGCACAAGATTCGGGCCAGGCAGAACAGGGCCTACCT GAAAGGCACAAGATTCGGGCCAGGCAGAACAGGGCCCACCT < 41bp 1 0.472023991522463 1 0.458757281303406 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26091729 chr6:26091745 nonsynonymous SNV 0.922 3 37 hm5C_associated_SNPs_34497 0 0 0 0 1 HFE chr6:26091817 5'GT 26091817 Upstream 73bp
chr3 17056268 17056268 1 + G A SKCM 17056251 + 17056231 17056271 41 GCCTCTCCTCTGTGGCCAATCTCATGCAGTGCATGTTGGCG GCCTCTCCTCTGTGGCCAATCTCATGCAGTGCATGTTAGCG < 41bp 1 0.53724680882744 1 0.156078994274139 experiment 0.92550638234512 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCL2 ENSG00000154822 CDS Human protein_coding chr3:17056251 chr3:17056268 synonymous SNV . 0 38 hm5C_associated_SNPs_34498 0 0 0 0 1 PLCL2 chr3:17056200 3'AG 17056200 Downstream 69bp
chr19 12924231 12924231 1 + C T SKCM 12924211 + 12924191 12924231 41 TACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTTC TACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTTT < 41bp 1 0.088189676583339 1 0.0580019354820251 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924211 chr19:12924231 nonsynonymous SNV 0.076 2 41 hm5C_associated_SNPs_34499 0 0 1 0 1 RNASEH2A chr19:12924142 3'AG 12924142 Downstream 90bp
chr19 12924231 12924231 1 + C T SKCM 12924232 + 12924212 12924252 41 CAAGCCCGTCCCCGTTCTTCCCACCGATATTTCCTGGAACG CAAGCCCGTCCCCGTTCTTTCCACCGATATTTCCTGGAACG < 41bp 1 0.199249349694003 1 0.0666802227497101 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924232 chr19:12924231 nonsynonymous SNV 0.076 2 20 hm5C_associated_SNPs_34500 0 0 1 0 1 RNASEH2A chr19:12924142 3'AG 12924142 Downstream 90bp
chr6 26091198 26091198 1 + A T SKCM 26091207 + 26091187 26091227 41 TCGCCGTGTGGAGCCCCGAACTCCATGGGTTTCCAGTAGAA TCGCCGTGTGGTGCCCCGAACTCCATGGGTTTCCAGTAGAA < 41bp 1 0.796792427599679 1 0.904087662696838 experiment 0.406415144800643 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26091207 chr6:26091198 nonsynonymous SNV 0.159 3 12 hm5C_associated_SNPs_34501 0 0 0 0 1 HFE chr6:26091138 3'AG 26091138 Downstream 61bp
chr2 113953766 113953766 1 + C T SKCM 113953757 + 113953737 113953777 41 ACAGCCAGACCTGAGAAGGCCCAGCCGTCCCTGCCAGCTGG ACAGCCAGACCTGAGAAGGCCCAGCCGTCTCTGCCAGCTGG < 41bp 1 0.0956023268081551 1 0.0834952294826508 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PSD4 ENSG00000125637 CDS Human protein_coding chr2:113953757 chr2:113953766 synonymous SNV . 0 30 hm5C_associated_SNPs_34509 0 0 1 0 1 PSD4 chr2:113953724 3'AG 113953724 Downstream 43bp
chr7 73731904 73731904 1 + C T SKCM 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AAGCCCAGCGGCCTGAAGCCCTCCGGCCGTGGGGGGAAGCA < 41bp 1 0.517295258353219 1 0.848106622695923 experiment 0.965409483293563 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731904 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_34510 0 0 0 0 2 CLIP2 chr7:73731810 3'AG 73731810 Downstream 95bp
chr7 73731904 73731904 1 + C T SKCM 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AAGCCCAGCGGCCTGAAGCCCTCCGGCCGTGGGGGGAAGCA < 41bp 1 0.517295258353219 1 0.848106622695923 experiment 0.965409483293563 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731904 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_34510 0 0 0 0 2 CLIP2 chr7:73731997 5'GT 73731997 Upstream 94bp
chr7 73731904 73731904 1 + C T SKCM 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT GCCCAGCGGCCTGAAGCCCTCCGGCCGTGGGGGGAAGCACT < 41bp 1 0.221128627711387 1 0.85800564289093 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731904 nonsynonymous SNV 0.996 3 20 hm5C_associated_SNPs_34511 0 0 0 0 2 CLIP2 chr7:73731810 3'AG 73731810 Downstream 95bp
chr7 73731904 73731904 1 + C T SKCM 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT GCCCAGCGGCCTGAAGCCCTCCGGCCGTGGGGGGAAGCACT < 41bp 1 0.221128627711387 1 0.85800564289093 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731904 nonsynonymous SNV 0.996 3 20 hm5C_associated_SNPs_34511 0 0 0 0 2 CLIP2 chr7:73731997 5'GT 73731997 Upstream 94bp
chr7 73731904 73731904 1 + C T SKCM 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC CCCAGCGGCCTGAAGCCCTCCGGCCGTGGGGGGAAGCACTC < 41bp 1 0.384438770194521 1 0.537100374698639 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731904 nonsynonymous SNV 0.996 3 19 hm5C_associated_SNPs_34512 0 0 0 0 2 CLIP2 chr7:73731810 3'AG 73731810 Downstream 95bp
chr7 73731904 73731904 1 + C T SKCM 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC CCCAGCGGCCTGAAGCCCTCCGGCCGTGGGGGGAAGCACTC < 41bp 1 0.384438770194521 1 0.537100374698639 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731904 nonsynonymous SNV 0.996 3 19 hm5C_associated_SNPs_34512 0 0 0 0 2 CLIP2 chr7:73731997 5'GT 73731997 Upstream 94bp
chr15 81214441 81214441 1 + G A SKCM 81214448 + 81214428 81214468 41 CACATTCCACTGGGAAAATTCTATAACAACCGAGCACATTC CACATTCCACTGGAAAAATTCTATAACAACCGAGCACATTC < 41bp 1 0.311676847208784 1 0.237704992294312 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81214448 chr15:81214441 nonsynonymous SNV 0.991 4 14 hm5C_associated_SNPs_34513 0 0 0 0 2 CEMIP chr15:81214350 3'AG 81214350 Downstream 92bp
chr15 81214441 81214441 1 + G A SKCM 81214448 + 81214428 81214468 41 CACATTCCACTGGGAAAATTCTATAACAACCGAGCACATTC CACATTCCACTGGAAAAATTCTATAACAACCGAGCACATTC < 41bp 1 0.311676847208784 1 0.237704992294312 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81214448 chr15:81214441 nonsynonymous SNV 0.991 4 14 hm5C_associated_SNPs_34513 0 0 0 0 2 CEMIP chr15:81214478 5'GT 81214478 Upstream 38bp
chr1 186386745 186386745 1 + C T SKCM 186386735 + 186386715 186386755 41 ACAACACAGATGATGAACAACCAAAACAACCAATTAAAACT ACAACACAGATGATGAACAACCAAAACAACTAATTAAAACT < 41bp 1 0.290399064790971 1 0.211376547813416 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C1orf27 ENSG00000157181 CDS Human protein_coding chr1:186386735 chr1:186386745 nonsynonymous SNV 0.706 0 31 hm5C_associated_SNPs_34514 0 0 1 0 2 C1orf27 chr1:186386676 3'AG 186386676 Downstream 70bp
chr1 186386745 186386745 1 + C T SKCM 186386735 + 186386715 186386755 41 ACAACACAGATGATGAACAACCAAAACAACCAATTAAAACT ACAACACAGATGATGAACAACCAAAACAACTAATTAAAACT < 41bp 1 0.290399064790971 1 0.211376547813416 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C1orf27 ENSG00000157181 CDS Human protein_coding chr1:186386735 chr1:186386745 nonsynonymous SNV 0.706 0 31 hm5C_associated_SNPs_34514 0 0 1 0 2 C1orf27 chr1:186386786 5'GT 186386786 Upstream 42bp
chr11 118885705 118885705 1 + T G SKCM 118885708 + 118885688 118885728 41 TTAATTTTTTTTTCAGGTGCCACACCTCCCTGGATGATCCA TTAATTTTTTTTTCAGGGGCCACACCTCCCTGGATGATCCA < 41bp 1 0.041358926856698 1 0.0626097917556763 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118885708 chr11:118885705 synonymous SNV . 0 18 hm5C_associated_SNPs_34515 0 0 1 1 2 CCDC84 chr11:118885704 3'AG 118885704 Downstream 2bp
chr11 118885705 118885705 1 + T G SKCM 118885708 + 118885688 118885728 41 TTAATTTTTTTTTCAGGTGCCACACCTCCCTGGATGATCCA TTAATTTTTTTTTCAGGGGCCACACCTCCCTGGATGATCCA < 41bp 1 0.041358926856698 1 0.0626097917556763 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118885708 chr11:118885705 synonymous SNV . 0 18 hm5C_associated_SNPs_34515 0 0 1 1 2 CCDC84 chr11:118885793 5'GT 118885793 Upstream 89bp
chr3 127340601 127340601 1 + C T SKCM 127340602 + 127340582 127340622 41 ACCTGAAAAGGAAAATGATCCTGCAGCAGTTCTGAGGCCCT ACCTGAAAAGGAAAATGATTCTGCAGCAGTTCTGAGGCCCT < 41bp 1 0.688732292825714 1 0.918533205986023 experiment 0.622535414348572 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127340602 chr3:127340601 synonymous SNV . 0 20 hm5C_associated_SNPs_34516 0 0 1 0 1 MCM2 chr3:127340506 3'AG 127340506 Downstream 96bp
chr3 49568307 49568307 1 + C T SKCM 49568306 + 49568286 49568326 41 CCACACCCTGGAGGGCCTCCCCCTTGACACTGATAAGGGTG CCACACCCTGGAGGGCCTCCCTCTTGACACTGATAAGGGTG < 41bp 1 0.420393132947558 1 0.22809636592865 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DAG1 ENSG00000173402 CDS Human protein_coding chr3:49568306 chr3:49568307 synonymous SNV . 0 22 hm5C_associated_SNPs_34519 0 0 1 0 1 DAG1 chr3:49568230 3'AG 49568230 Downstream 78bp
chr16 68071946 68071946 1 + C T SKCM 68071957 + 68071937 68071977 41 ATAGCCTCTCTCTGTGTTACCATAATAAGCTAATCCTGGCC ATAGCCTCTTTCTGTGTTACCATAATAAGCTAATCCTGGCC < 41bp 1 0.345112866505006 1 0.246072113513947 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68071957 chr16:68071946 nonsynonymous SNV 0.913 1 10 hm5C_associated_SNPs_34520 0 0 0 0 1 DUS2 chr16:68071909 3'AG 68071909 Downstream 38bp
chr1 94012458 94012458 1 + G A SKCM 94012454 + 94012434 94012474 41 AGAATCCACAAATGGGGGATCCAGGGAGTTTGCAGCCTAAA AGAATCCACAAATGGGGGATCCAGAGAGTTTGCAGCCTAAA < 41bp 1 0.435559019327714 1 0.67816823720932 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FNBP1L ENSG00000137942 CDS Human protein_coding chr1:94012454 chr1:94012458 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_34521 0 0 1 0 2 FNBP1L chr1:94012399 3'AG 94012399 Downstream 60bp
chr1 94012458 94012458 1 + G A SKCM 94012454 + 94012434 94012474 41 AGAATCCACAAATGGGGGATCCAGGGAGTTTGCAGCCTAAA AGAATCCACAAATGGGGGATCCAGAGAGTTTGCAGCCTAAA < 41bp 1 0.435559019327714 1 0.67816823720932 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FNBP1L ENSG00000137942 CDS Human protein_coding chr1:94012454 chr1:94012458 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_34521 0 0 1 0 2 FNBP1L chr1:94012531 5'GT 94012531 Upstream 74bp
chr12 6939891 6939891 1 + C T SKCM 6939910 + 6939890 6939930 41 TCCTTCCCAACCAGCTGAGGCGGCTACATGAGGCCCATGCT TTCTTCCCAACCAGCTGAGGCGGCTACATGAGGCCCATGCT < 41bp 1 0.228945460867428 1 0.703923344612122 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control P3H3 ENSG00000110811 CDS Human protein_coding chr12:6939910 chr12:6939891 synonymous SNV . 0 2 hm5C_associated_SNPs_34522 0 0 1 0 1 P3H3 chr12:6939803 3'AG 6939803 Downstream 89bp
chr18 29116337 29116337 1 + C T SKCM 29116350 + 29116330 29116370 41 GTTTCTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAA GTTTCTCTGTCATTGACAAACCACCTGGCATGGCAGAAAAA < 41bp 1 0.139041854067266 1 0.153091311454773 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116350 chr18:29116337 synonymous SNV . 0 8 hm5C_associated_SNPs_34523 0 0 1 0 1 DSG2 chr18:29116392 5'GT 29116392 Upstream 56bp
chr18 29116337 29116337 1 + C T SKCM 29116354 + 29116334 29116374 41 CTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAATGGA CTCTGTCATTGACAAACCACCTGGCATGGCAGAAAAATGGA < 41bp 1 0.43370387597603 1 0.157059371471405 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116354 chr18:29116337 synonymous SNV . 0 4 hm5C_associated_SNPs_34524 0 0 1 0 1 DSG2 chr18:29116392 5'GT 29116392 Upstream 56bp
chr17 73484956 73484956 1 + C T SKCM 73484970 + 73484950 73484990 41 GCTTTTCCGTGTCCTTGAGACCCCTGTGATTGACAACATCA GCTTTTTCGTGTCCTTGAGACCCCTGTGATTGACAACATCA < 41bp 1 0.136371244034238 1 0.0456604063510895 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73484970 chr17:73484956 synonymous SNV . 0 7 hm5C_associated_SNPs_34525 0 0 0 0 1 TMEM94 chr17:73484991 5'GT 73484991 Upstream 36bp
chr7 142459675 142459675 1 + A T SKCM 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAT < 41bp 1 0.658225131543257 1 0.134485155344009 experiment 0.683549736913487 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459675 nonsynonymous SNV 0.130 2 41 hm5C_associated_SNPs_34527 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 51bp
chr7 142459675 142459675 1 + A T SKCM 142459658 + 142459638 142459678 41 AGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAATGA AGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGATTGA < 41bp 1 0.728044167098682 1 0.479902416467667 experiment 0.543911665802636 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459658 chr7:142459675 nonsynonymous SNV 0.130 2 38 hm5C_associated_SNPs_34528 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 51bp
chr7 142459675 142459675 1 + A T SKCM 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCACAACATCGAAGTCCTGGAGGGGATTGAGCAGTT < 41bp 1 0.551477969600737 1 0.370010793209076 experiment 0.897044060798527 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459675 nonsynonymous SNV 0.130 2 32 hm5C_associated_SNPs_34529 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 51bp
chr7 142459675 142459675 1 + A T SKCM 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG AAGTCCTGGAGGGGATTGAGCAGTTCATCAATGCAGCCAAG < 41bp 1 0.513433383440992 1 0.358984529972076 experiment 0.973133233118015 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459675 nonsynonymous SNV 0.130 2 16 hm5C_associated_SNPs_34530 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 51bp
chr7 142459675 142459675 1 + A T SKCM 142459685 + 142459665 142459705 41 CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT CTGGAGGGGATTGAGCAGTTCATCAATGCAGCCAAGATCAT < 41bp 1 0.630558006324745 1 0.0420269370079041 experiment 0.738883987350511 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459685 chr7:142459675 nonsynonymous SNV 0.130 2 11 hm5C_associated_SNPs_34531 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 51bp
chr7 142459675 142459675 1 + A T SKCM 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAGGGGATTGAGCAGTTCATCAATGCAGCCAAGATCATCCG < 41bp 1 0.654211153571744 1 0.459728062152863 experiment 0.691577692856513 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459675 nonsynonymous SNV 0.130 2 8 hm5C_associated_SNPs_34532 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 51bp
chr7 142459675 142459675 1 + A T SKCM 142459693 + 142459673 142459713 41 GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC GATTGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC < 41bp 1 0.588420499798014 1 0.0247056484222412 experiment 0.823159000403972 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459693 chr7:142459675 nonsynonymous SNV 0.130 2 3 hm5C_associated_SNPs_34533 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 51bp
chr8 21859730 21859730 1 + G A SKCM 21859721 + 21859701 21859741 41 CCAAGAAGAGGACCACACCCCTGAACCAGGAGAGCGACCGC CCAAGAAGAGGACCACACCCCTGAACCAGAAGAGCGACCGC < 41bp 1 0.733581008748239 1 0.792451143264771 experiment 0.532837982503521 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21859721 chr8:21859730 nonsynonymous SNV 0.998 1 30 hm5C_associated_SNPs_34534 0 0 1 0 1 XPO7 chr8:21859783 5'GT 21859783 Upstream 54bp
chr8 21859730 21859730 1 + G A SKCM 21859735 + 21859715 21859755 41 ACACCCCTGAACCAGGAGAGCGACCGCTTTCTGCACATCAT ACACCCCTGAACCAGAAGAGCGACCGCTTTCTGCACATCAT < 41bp 1 0.30171275461022 1 0.139881819486618 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21859735 chr8:21859730 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_34535 0 0 1 0 1 XPO7 chr8:21859783 5'GT 21859783 Upstream 54bp
chr5 33455743 33455743 1 + C T SKCM 33455756 + 33455736 33455776 41 AGAAAATCATTAAAGAAAAACAAGCTTTTGAAAGACTGGAA AGAAAATTATTAAAGAAAAACAAGCTTTTGAAAGACTGGAA < 41bp 1 0.337319175313694 1 0.452490925788879 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33455756 chr5:33455743 synonymous SNV . 0 8 hm5C_associated_SNPs_34536 0 0 1 0 2 TARS chr5:33455692 3'AG 33455692 Downstream 52bp
chr5 33455743 33455743 1 + C T SKCM 33455756 + 33455736 33455776 41 AGAAAATCATTAAAGAAAAACAAGCTTTTGAAAGACTGGAA AGAAAATTATTAAAGAAAAACAAGCTTTTGAAAGACTGGAA < 41bp 1 0.337319175313694 1 0.452490925788879 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33455756 chr5:33455743 synonymous SNV . 0 8 hm5C_associated_SNPs_34536 0 0 1 0 2 TARS chr5:33455809 5'GT 33455809 Upstream 67bp
chr19 1055316 1055316 1 + C T SKCM 1055304 + 1055284 1055324 41 AGAACCTGACAGGCCGGAACCTGTCTGACTTCCTGGTCAAG AGAACCTGACAGGCCGGAACCTGTCTGACTTCTTGGTCAAG < 41bp 1 0.116798352735852 1 0.0912027955055237 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1055304 chr19:1055316 synonymous SNV . 0 33 hm5C_associated_SNPs_34537 0 0 1 0 1 ABCA7 chr19:1055350 5'GT 1055350 Upstream 35bp
chr15 45353347 45353347 1 + C T SKCM 45353327 + 45353307 45353347 41 ATGAATTCTGCAAGATGGGCCGATACAATCTGTCACCTTCC ATGAATTCTGCAAGATGGGCCGATACAATCTGTCACCTTCT < 41bp 1 0.188438299045636 1 0.384788990020752 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SORD ENSG00000140263 CDS Human protein_coding chr15:45353327 chr15:45353347 synonymous SNV . 0 41 hm5C_associated_SNPs_34538 0 0 1 0 2 SORD chr15:45353265 3'AG 45353265 Downstream 83bp
chr15 45353347 45353347 1 + C T SKCM 45353327 + 45353307 45353347 41 ATGAATTCTGCAAGATGGGCCGATACAATCTGTCACCTTCC ATGAATTCTGCAAGATGGGCCGATACAATCTGTCACCTTCT < 41bp 1 0.188438299045636 1 0.384788990020752 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SORD ENSG00000140263 CDS Human protein_coding chr15:45353327 chr15:45353347 synonymous SNV . 0 41 hm5C_associated_SNPs_34538 0 0 1 0 2 SORD chr15:45353424 5'GT 45353424 Upstream 78bp
chr5 14280515 14280515 1 + G A SKCM 14280517 + 14280497 14280537 41 GACAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCCTGT GACAGGAGGATCTCAGGAAACTCATTTCCTATCTAGCCTGT < 41bp 1 0.328946648864266 1 0.11011478304863 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14280517 chr5:14280515 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_34539 0 0 1 0 2 TRIO chr5:14280431 3'AG 14280431 Downstream 85bp
chr5 14280515 14280515 1 + G A SKCM 14280517 + 14280497 14280537 41 GACAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCCTGT GACAGGAGGATCTCAGGAAACTCATTTCCTATCTAGCCTGT < 41bp 1 0.328946648864266 1 0.11011478304863 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14280517 chr5:14280515 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_34539 0 0 1 0 2 TRIO chr5:14280545 5'GT 14280545 Upstream 31bp
chrX 77373639 77373639 1 + G A SKCM 77373646 + 77373626 77373666 41 CTTGGAGAGCCCAGAGCGACCCTTCCTGGCCATCCTGGGCG CTTGGAGAGCCCAAAGCGACCCTTCCTGGCCATCCTGGGCG < 41bp 1 0.0560102602465636 1 0.0578645467758179 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77373646 chrX:77373639 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_34540 0 0 1 2 2 PGK1 chrX:77373548 3'AG 77373548 Downstream 92bp
chrX 77373639 77373639 1 + G A SKCM 77373646 + 77373626 77373666 41 CTTGGAGAGCCCAGAGCGACCCTTCCTGGCCATCCTGGGCG CTTGGAGAGCCCAAAGCGACCCTTCCTGGCCATCCTGGGCG < 41bp 1 0.0560102602465636 1 0.0578645467758179 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77373646 chrX:77373639 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_34540 0 0 1 2 2 PGK1 chrX:77373667 5'GT 77373667 Upstream 29bp
chr6 33656527 33656527 1 + C T SKCM 33656530 + 33656510 33656550 41 AACATCATCATTGCCTTCTTCTACCCTTACATGGAGGGCGC AACATCATCATTGCCTTTTTCTACCCTTACATGGAGGGCGC < 41bp 1 0.172969993353041 1 0.261138379573822 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33656530 chr6:33656527 synonymous SNV . 0 18 hm5C_associated_SNPs_34542 0 0 1 0 2 ITPR3 chr6:33656433 3'AG 33656433 Downstream 95bp
chr6 33656527 33656527 1 + C T SKCM 33656530 + 33656510 33656550 41 AACATCATCATTGCCTTCTTCTACCCTTACATGGAGGGCGC AACATCATCATTGCCTTTTTCTACCCTTACATGGAGGGCGC < 41bp 1 0.172969993353041 1 0.261138379573822 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33656530 chr6:33656527 synonymous SNV . 0 18 hm5C_associated_SNPs_34542 0 0 1 0 2 ITPR3 chr6:33656558 5'GT 33656558 Upstream 32bp
chrX 114877744 114877744 1 + C T SKCM 114877725 + 114877705 114877745 41 TGATGTTGTCAGTGGAAACCCCAAACTCAACTTAGCTTTCG TGATGTTGTCAGTGGAAACCCCAAACTCAACTTAGCTTTTG < 41bp 1 0.438047872238359 1 0.250882804393768 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLS3 ENSG00000102024 CDS Human protein_coding chrX:114877725 chrX:114877744 synonymous SNV . 0 40 hm5C_associated_SNPs_34543 0 0 1 1 1 PLS3 chrX:114877820 5'GT 114877820 Upstream 77bp
chr17 16342728 16342728 1 + G A SKCM 16342711 + 16342691 16342731 41 CGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTA CGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGAGTA < 41bp 1 0.368435583593854 1 0.169041395187378 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342711 chr17:16342728 . . 0 38 hm5C_associated_SNPs_34544 0 0 1 0 2 LRRC75A-AS1 chr17:16342641 3'AG 16342641 Downstream 88bp
chr17 16342728 16342728 1 + G A SKCM 16342711 + 16342691 16342731 41 CGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTA CGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGAGTA < 41bp 1 0.368435583593854 1 0.169041395187378 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342711 chr17:16342728 . . 0 38 hm5C_associated_SNPs_34544 0 0 1 0 2 LRRC75A-AS1 chr17:16342728 5'GT 16342728 Upstream 1bp
chr17 16342728 16342728 1 + G A SKCM 16342716 + 16342696 16342736 41 CACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTAAGTTG CACAGTGGGGGTGTGCAAACCCGAGAGAACTGAGTAAGTTG < 41bp 1 0.600298851082769 1 0.547478497028351 experiment 0.799402297834463 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342716 chr17:16342728 . . 0 33 hm5C_associated_SNPs_34545 0 0 1 0 2 LRRC75A-AS1 chr17:16342641 3'AG 16342641 Downstream 88bp
chr17 16342728 16342728 1 + G A SKCM 16342716 + 16342696 16342736 41 CACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTAAGTTG CACAGTGGGGGTGTGCAAACCCGAGAGAACTGAGTAAGTTG < 41bp 1 0.600298851082769 1 0.547478497028351 experiment 0.799402297834463 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342716 chr17:16342728 . . 0 33 hm5C_associated_SNPs_34545 0 0 1 0 2 LRRC75A-AS1 chr17:16342728 5'GT 16342728 Upstream 1bp
chr12 112579928 112579928 1 + C T SKCM 112579938 + 112579918 112579958 41 GAATAGAGGCCAACAGCCCCCCAAAGAGGGTGGTGAAGAGA GAATAGAGGCTAACAGCCCCCCAAAGAGGGTGGTGAAGAGA < 41bp 1 0.296941423952046 1 0.383893102407455 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112579938 chr12:112579928 stopgain 0.092 0 11 hm5C_associated_SNPs_34546 0 0 1 1 1 TRAFD1 chr12:112579893 3'AG 112579893 Downstream 36bp
chr17 16342727 16342727 1 + G A SKCM 16342711 + 16342691 16342731 41 CGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTA CGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTAGGTA < 41bp 1 0.350898470044131 1 0.211453765630722 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342711 chr17:16342727 . . 0 37 hm5C_associated_SNPs_34547 0 0 1 0 2 LRRC75A-AS1 chr17:16342641 3'AG 16342641 Downstream 87bp
chr17 16342727 16342727 1 + G A SKCM 16342711 + 16342691 16342731 41 CGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTA CGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTAGGTA < 41bp 1 0.350898470044131 1 0.211453765630722 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342711 chr17:16342727 . . 0 37 hm5C_associated_SNPs_34547 0 0 1 0 2 LRRC75A-AS1 chr17:16342728 5'GT 16342728 Upstream 2bp
chr17 16342727 16342727 1 + G A SKCM 16342716 + 16342696 16342736 41 CACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTAAGTTG CACAGTGGGGGTGTGCAAACCCGAGAGAACTAGGTAAGTTG < 41bp 1 0.593461784406094 1 0.603725492954254 experiment 0.813076431187811 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342716 chr17:16342727 . . 0 32 hm5C_associated_SNPs_34548 0 0 1 0 2 LRRC75A-AS1 chr17:16342641 3'AG 16342641 Downstream 87bp
chr17 16342727 16342727 1 + G A SKCM 16342716 + 16342696 16342736 41 CACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTAAGTTG CACAGTGGGGGTGTGCAAACCCGAGAGAACTAGGTAAGTTG < 41bp 1 0.593461784406094 1 0.603725492954254 experiment 0.813076431187811 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342716 chr17:16342727 . . 0 32 hm5C_associated_SNPs_34548 0 0 1 0 2 LRRC75A-AS1 chr17:16342728 5'GT 16342728 Upstream 2bp
chrX 48663912 48663912 1 + C T SKCM 48663902 + 48663882 48663922 41 GAGCAACTGATCCAGGAGGGCCTCCTAGATCGCTGCGTGTC GAGCAACTGATCCAGGAGGGCCTCCTAGATTGCTGCGTGTC < 41bp 1 0.0566647524083019 1 0.0460980236530304 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48663902 chrX:48663912 nonsynonymous SNV 0.990 4 31 hm5C_associated_SNPs_34557 0 0 1 0 2 HDAC6 chrX:48663845 3'AG 48663845 Downstream 68bp
chrX 48663912 48663912 1 + C T SKCM 48663902 + 48663882 48663922 41 GAGCAACTGATCCAGGAGGGCCTCCTAGATCGCTGCGTGTC GAGCAACTGATCCAGGAGGGCCTCCTAGATTGCTGCGTGTC < 41bp 1 0.0566647524083019 1 0.0460980236530304 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48663902 chrX:48663912 nonsynonymous SNV 0.990 4 31 hm5C_associated_SNPs_34557 0 0 1 0 2 HDAC6 chrX:48663929 5'GT 48663929 Upstream 18bp
chr2 220350099 220350099 1 + G A SKCM 220350113 + 220350093 220350133 41 CCGCTGGGGCTTCTCTCGGCCGCGGAAGGACAAGGGGTTAT CCGCTGAGGCTTCTCTCGGCCGCGGAAGGACAAGGGGTTAT < 41bp 1 0.453668693900093 1 0.659614741802216 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220350113 chr2:220350099 stopgain 0.806 0 7 hm5C_associated_SNPs_34558 0 0 0 0 1 SPEG chr2:220350068 3'AG 220350068 Downstream 32bp
chr20 62373342 62373342 1 + C T SKCM 62373328 + 62373308 62373348 41 GACCTGGCCAGTGACCAGTCCTCTCCGTCCACCCCGTCACC GACCTGGCCAGTGACCAGTCCTCTCCGTCCACCCTGTCACC < 41bp 1 0.0782550053035241 1 0.0864595472812653 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62373328 chr20:62373342 nonsynonymous SNV 0.394 3 35 hm5C_associated_SNPs_34560 0 0 1 0 1 SLC2A4RG chr20:62373409 5'GT 62373409 Upstream 68bp
chr1 154207139 154207139 1 + G A SKCM 154207128 + 154207108 154207148 41 CCAGAAGGATGGTGGCCAGACGGAATCCAATGAGGAAGGCA CCAGAAGGATGGTGGCCAGACGGAATCCAATAAGGAAGGCA < 41bp 1 0.797195894708609 1 0.463515490293503 experiment 0.405608210582782 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154207128 chr1:154207139 nonsynonymous SNV 0.967 1 32 hm5C_associated_SNPs_34562 0 0 1 0 1 UBAP2L chr1:154207067 3'AG 154207067 Downstream 73bp
chr1 154207139 154207139 1 + G A SKCM 154207147 + 154207127 154207167 41 ACGGAATCCAATGAGGAAGGCAAAGAAAATCGAGACCGGGA ACGGAATCCAATAAGGAAGGCAAAGAAAATCGAGACCGGGA < 41bp 1 0.344162184985096 1 0.240527182817459 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154207147 chr1:154207139 nonsynonymous SNV 0.967 1 13 hm5C_associated_SNPs_34563 0 0 1 0 1 UBAP2L chr1:154207067 3'AG 154207067 Downstream 73bp
chr5 156786131 156786131 1 + A T SKCM 156786136 + 156786116 156786156 41 CTGTGGTCATGGAGGAACTGCTAAAGATTGTGAAGAGCTTG CTGTGGTCATGGAGGTACTGCTAAAGATTGTGAAGAGCTTG < 41bp 1 0.343141791303657 1 0.336810827255249 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156786136 chr5:156786131 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_34564 0 0 1 0 1 CYFIP2 chr5:156786156 5'GT 156786156 Upstream 26bp
chrX 153533723 153533723 1 + A G SKCM 153533726 + 153533706 153533746 41 TCTACATCATGAGGTACAAGCAGTCAGATCCAGAGAATCCG TCTACATCATGAGGTACGAGCAGTCAGATCCAGAGAATCCG < 41bp 1 0.125706676409636 1 0.189679980278015 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153533726 chrX:153533723 nonsynonymous SNV 0.023 1 18 hm5C_associated_SNPs_34565 0 0 0 0 3 TKTL1 chrX:153533656 3'AG 153533656 Downstream 68bp
chrX 153533723 153533723 1 + A G SKCM 153533726 + 153533706 153533746 41 TCTACATCATGAGGTACAAGCAGTCAGATCCAGAGAATCCG TCTACATCATGAGGTACGAGCAGTCAGATCCAGAGAATCCG < 41bp 1 0.125706676409636 1 0.189679980278015 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153533726 chrX:153533723 nonsynonymous SNV 0.023 1 18 hm5C_associated_SNPs_34565 0 0 0 0 3 TKTL1 chrX:153533674 3'AG 153533674 Downstream 50bp
chrX 153533723 153533723 1 + A G SKCM 153533726 + 153533706 153533746 41 TCTACATCATGAGGTACAAGCAGTCAGATCCAGAGAATCCG TCTACATCATGAGGTACGAGCAGTCAGATCCAGAGAATCCG < 41bp 1 0.125706676409636 1 0.189679980278015 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153533726 chrX:153533723 nonsynonymous SNV 0.023 1 18 hm5C_associated_SNPs_34565 0 0 0 0 3 TKTL1 chrX:153533773 5'GT 153533773 Upstream 51bp
chrX 84502582 84502582 1 + G A SKCM 84502590 + 84502570 84502610 41 TTGCTAAGTATGGATTCAGGCGGTGGAAGTCTTGGATTGCA TTGCTAAGTATGAATTCAGGCGGTGGAAGTCTTGGATTGCA < 41bp 1 0.565570493389037 1 0.603775858879089 experiment 0.868859013221926 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF711 ENSG00000147180 CDS Human protein_coding chrX:84502590 chrX:84502582 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_34566 0 0 1 0 2 ZNF711 chrX:84502553 3'AG 84502553 Downstream 30bp
chrX 84502582 84502582 1 + G A SKCM 84502590 + 84502570 84502610 41 TTGCTAAGTATGGATTCAGGCGGTGGAAGTCTTGGATTGCA TTGCTAAGTATGAATTCAGGCGGTGGAAGTCTTGGATTGCA < 41bp 1 0.565570493389037 1 0.603775858879089 experiment 0.868859013221926 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF711 ENSG00000147180 CDS Human protein_coding chrX:84502590 chrX:84502582 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_34566 0 0 1 0 2 ZNF711 chrX:84502657 5'GT 84502657 Upstream 76bp
chr7 150769181 150769181 1 + C T SKCM 150769166 + 150769146 150769186 41 TCCCGCTTCACCCAGGAGATCTTCGCCTTCTTGATCTCACT TCCCGCTTCACCCAGGAGATCTTCGCCTTCTTGATTTCACT < 41bp 1 0.0547109386127748 1 0.0547627508640289 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150769166 chr7:150769181 synonymous SNV . 0 36 hm5C_associated_SNPs_34569 0 0 1 0 1 SLC4A2 chr7:150769223 5'GT 150769223 Upstream 43bp
chr2 171822314 171822314 1 + C T SKCM 171822305 + 171822285 171822325 41 CCGTTTTTGTCCTAGGTCTGCCACCTCTTCCTTCCATGCCT CCGTTTTTGTCCTAGGTCTGCCACCTCTTTCTTCCATGCCT < 41bp 1 0.112016495861068 1 0.0827114582061768 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171822305 chr2:171822314 nonsynonymous SNV 0.907 0 30 hm5C_associated_SNPs_34570 0 0 1 0 1 GORASP2 chr2:171822300 3'AG 171822300 Downstream 15bp
chr19 10561318 10561318 1 + C T SKCM 10561299 + 10561279 10561319 41 GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCTA < 41bp 1 0.0410355999008092 1 0.12400233745575 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561299 chr19:10561318 synonymous SNV . 0 40 hm5C_associated_SNPs_34573 0 0 0 0 2 PDE4A chr19:10561279 3'AG 10561279 Downstream 40bp
chr19 10561318 10561318 1 + C T SKCM 10561299 + 10561279 10561319 41 GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCTA < 41bp 1 0.0410355999008092 1 0.12400233745575 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561299 chr19:10561318 synonymous SNV . 0 40 hm5C_associated_SNPs_34573 0 0 0 0 2 PDE4A chr19:10561328 5'GT 10561328 Upstream 11bp
chrX 49853375 49853375 1 + C T SKCM 49853386 + 49853366 49853406 41 CCTCTTTATCCCTAGCATGGCTGTTGGTGCTATAGCAGGTC CCTCTTTATTCCTAGCATGGCTGTTGGTGCTATAGCAGGTC < 41bp 1 0.163073423632831 1 0.29068386554718 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLCN5 ENSG00000171365 CDS Human protein_coding chrX:49853386 chrX:49853375 synonymous SNV . 0 10 hm5C_associated_SNPs_34574 0 0 0 0 1 CLCN5 chrX:49853355 3'AG 49853355 Downstream 21bp
chr5 172421790 172421790 1 + C T SKCM 172421784 + 172421764 172421804 41 TTTTTTTTTTTTAGAGTTATCATTACCATGTTGGTGACCTG TTTTTTTTTTTTAGAGTTATCATTACTATGTTGGTGACCTG < 41bp 1 0.220705074546913 1 0.361826181411743 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ATP6V0E1 ENSG00000113732 CDS Human protein_coding chr5:172421784 chr5:172421790 synonymous SNV . 0 27 hm5C_associated_SNPs_34577 0 0 1 0 1 ATP6V0E1 chr5:172421825 5'GT 172421825 Upstream 36bp
chr1 162040006 162040006 1 + G A SKCM 162040009 + 162039989 162040029 41 AACCTTGTGGACGATGGGCACGACCTGCGGATCCCCTTGCA AACCTTGTGGACGATGGACACGACCTGCGGATCCCCTTGCA < 41bp 1 0.420540945007372 1 0.460889011621475 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOS1AP ENSG00000198929 CDS Human protein_coding chr1:162040009 chr1:162040006 synonymous SNV . 0 18 hm5C_associated_SNPs_34578 0 0 1 0 1 NOS1AP chr1:162040072 5'GT 162040072 Upstream 67bp
chr11 68213994 68213994 1 + C T SKCM 68213986 + 68213966 68214006 41 CTCTTCAAACATTCCGGCCACTGCGAGACCGTACAGGTAGG CTCTTCAAACATTCCGGCCACTGCGAGATCGTACAGGTAGG < 41bp 1 0.330850200466586 1 0.164480209350586 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68213986 chr11:68213994 nonsynonymous SNV 0.065 1 29 hm5C_associated_SNPs_34579 0 0 1 0 2 LRP5 chr11:68213904 3'AG 68213904 Downstream 91bp
chr11 68213994 68213994 1 + C T SKCM 68213986 + 68213966 68214006 41 CTCTTCAAACATTCCGGCCACTGCGAGACCGTACAGGTAGG CTCTTCAAACATTCCGGCCACTGCGAGATCGTACAGGTAGG < 41bp 1 0.330850200466586 1 0.164480209350586 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68213986 chr11:68213994 nonsynonymous SNV 0.065 1 29 hm5C_associated_SNPs_34579 0 0 1 0 2 LRP5 chr11:68214001 5'GT 68214001 Upstream 8bp
chr14 97002296 97002296 1 + C T SKCM 97002283 + 97002263 97002303 41 ATACCCACAACAGAACTCCACGTACAATGTGTCCGTTTCAA ATACCCACAACAGAACTCCACGTACAATGTGTCTGTTTCAA < 41bp 1 0.0907260717416762 1 0.0719242691993713 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97002283 chr14:97002296 synonymous SNV . 0 34 hm5C_associated_SNPs_34581 0 0 1 0 2 PAPOLA chr14:97002216 3'AG 97002216 Downstream 81bp
chr14 97002296 97002296 1 + C T SKCM 97002283 + 97002263 97002303 41 ATACCCACAACAGAACTCCACGTACAATGTGTCCGTTTCAA ATACCCACAACAGAACTCCACGTACAATGTGTCTGTTTCAA < 41bp 1 0.0907260717416762 1 0.0719242691993713 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97002283 chr14:97002296 synonymous SNV . 0 34 hm5C_associated_SNPs_34581 0 0 1 0 2 PAPOLA chr14:97002336 5'GT 97002336 Upstream 41bp
chr20 57289638 57289638 1 + C T SKCM 57289631 + 57289611 57289651 41 CCTAGGACCGAGACAACAGCCCCAGCTCCTGTGCTGGCCTC CCTAGGACCGAGACAACAGCCCCAGCTTCTGTGCTGGCCTC < 41bp 1 0.397442745765384 1 0.390626817941666 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57289631 chr20:57289638 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_34582 0 0 1 0 2 NPEPL1 chr20:57289616 3'AG 57289616 Downstream 23bp
chr20 57289638 57289638 1 + C T SKCM 57289631 + 57289611 57289651 41 CCTAGGACCGAGACAACAGCCCCAGCTCCTGTGCTGGCCTC CCTAGGACCGAGACAACAGCCCCAGCTTCTGTGCTGGCCTC < 41bp 1 0.397442745765384 1 0.390626817941666 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57289631 chr20:57289638 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_34582 0 0 1 0 2 NPEPL1 chr20:57289726 5'GT 57289726 Upstream 89bp
chr22 31658772 31658772 1 + C T SKCM 31658771 + 31658751 31658791 41 GGGGACACTGAGGAGACGTTCCCTAAGGTGCCACCTCCCAC GGGGACACTGAGGAGACGTTCTCTAAGGTGCCACCTCCCAC < 41bp 1 0.663753158419088 1 0.614999830722809 experiment 0.672493683161825 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31658771 chr22:31658772 synonymous SNV . 0 22 hm5C_associated_SNPs_34584 0 0 1 0 1 LIMK2 chr22:31658777 5'GT 31658777 Upstream 6bp
chr11 61503211 61503211 1 + G A SKCM 61503225 + 61503205 61503245 41 CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTGAGCG CCCAAGAATGCCCTGACTGACCTGACGGGTGATGCTGAGCG < 41bp 1 0.260399916514512 1 0.10739666223526 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503225 chr11:61503211 nonsynonymous SNV 0.840 4 7 hm5C_associated_SNPs_34585 0 0 0 0 2 DAGLA chr11:61503211 3'AG 61503211 Downstream 1bp
chr11 61503211 61503211 1 + G A SKCM 61503225 + 61503205 61503245 41 CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTGAGCG CCCAAGAATGCCCTGACTGACCTGACGGGTGATGCTGAGCG < 41bp 1 0.260399916514512 1 0.10739666223526 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503225 chr11:61503211 nonsynonymous SNV 0.840 4 7 hm5C_associated_SNPs_34585 0 0 0 0 2 DAGLA chr11:61503288 5'GT 61503288 Upstream 78bp
chr16 29708339 29708339 1 + C G SKCM 29708327 + 29708307 29708347 41 TGCCCAGCAGGCGGTGCGGGCGGCCAGACAGGCGGCTGACT TGCCCAGCAGGCGGTGCGGGCGGCCAGACAGGGGGCTGACT < 41bp 1 0.393921498141035 1 0.470549643039703 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29708327 chr16:29708339 nonsynonymous SNV 0.003 0 33 hm5C_associated_SNPs_34586 0 0 1 0 1 QPRT chr16:29708317 3'AG 29708317 Downstream 23bp
chr16 29708339 29708339 1 + C G SKCM 29708330 + 29708310 29708350 41 CCAGCAGGCGGTGCGGGCGGCCAGACAGGCGGCTGACTTCA CCAGCAGGCGGTGCGGGCGGCCAGACAGGGGGCTGACTTCA < 41bp 1 0.46118756245409 1 0.275184988975525 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29708330 chr16:29708339 nonsynonymous SNV 0.003 0 30 hm5C_associated_SNPs_34587 0 0 1 0 1 QPRT chr16:29708317 3'AG 29708317 Downstream 23bp
chr10 71855426 71855426 1 + G A SKCM 71855433 + 71855413 71855453 41 TCCTTAACCCAGAGTGACATCAGCCATATTGGCTCCATGAG TCCTTAACCCAGAATGACATCAGCCATATTGGCTCCATGAG < 41bp 1 0.372053187466491 1 0.191115975379944 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71855433 chr10:71855426 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_34588 0 0 1 2 2 H2AFY2 chr10:71855410 3'AG 71855410 Downstream 17bp
chr10 71855426 71855426 1 + G A SKCM 71855433 + 71855413 71855453 41 TCCTTAACCCAGAGTGACATCAGCCATATTGGCTCCATGAG TCCTTAACCCAGAATGACATCAGCCATATTGGCTCCATGAG < 41bp 1 0.372053187466491 1 0.191115975379944 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71855433 chr10:71855426 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_34588 0 0 1 2 2 H2AFY2 chr10:71855509 5'GT 71855509 Upstream 84bp
chr22 24573545 24573545 1 + C T SKCM 24573547 + 24573527 24573567 41 TGAGACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCT TGAGACTCAGCCCCTGAGTTCTCCCCCAACAGCTGCCAGCT < 41bp 1 0.125642529942331 1 0.307856827974319 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573547 chr22:24573545 synonymous SNV . 0 19 hm5C_associated_SNPs_34589 0 0 1 0 1 CABIN1 chr22:24573472 3'AG 24573472 Downstream 74bp
chr22 24573545 24573545 1 + C T SKCM 24573549 + 24573529 24573569 41 AGACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCC AGACTCAGCCCCTGAGTTCTCCCCCAACAGCTGCCAGCTCC < 41bp 1 0.188604654822213 1 0.416711717844009 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573549 chr22:24573545 synonymous SNV . 0 17 hm5C_associated_SNPs_34590 0 0 1 0 1 CABIN1 chr22:24573472 3'AG 24573472 Downstream 74bp
chr22 24573545 24573545 1 + C T SKCM 24573550 + 24573530 24573570 41 GACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCCA GACTCAGCCCCTGAGTTCTCCCCCAACAGCTGCCAGCTCCA < 41bp 1 0.21300043188166 1 0.342097461223602 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573550 chr22:24573545 synonymous SNV . 0 16 hm5C_associated_SNPs_34591 0 0 1 0 1 CABIN1 chr22:24573472 3'AG 24573472 Downstream 74bp
chr22 24573545 24573545 1 + C T SKCM 24573551 + 24573531 24573571 41 ACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCCAA ACTCAGCCCCTGAGTTCTCCCCCAACAGCTGCCAGCTCCAA < 41bp 1 0.243131515691459 1 0.179991394281387 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573551 chr22:24573545 synonymous SNV . 0 15 hm5C_associated_SNPs_34592 0 0 1 0 1 CABIN1 chr22:24573472 3'AG 24573472 Downstream 74bp
chr2 102959740 102959740 1 + G A SKCM 102959733 + 102959713 102959753 41 ACAGGTTGCTTTCTTAGTTTCAGCAATGGGCTGGCTTGTCT ACAGGTTGCTTTCTTAGTTTCAGCAATAGGCTGGCTTGTCT < 41bp 1 0.61813798869541 1 0.793157339096069 experiment 0.76372402260918 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control IL1RL1 ENSG00000115602 CDS Human protein_coding chr2:102959733 chr2:102959740 nonsynonymous SNV 0.004 0 28 hm5C_associated_SNPs_34593 0 0 0 0 1 IL1RL1 chr2:102959730 3'AG 102959730 Downstream 11bp
chr17 73481987 73481987 1 + C T SKCM 73481976 + 73481956 73481996 41 TGTGGAGAAGCAGCTTCCTCCACCACAGTAACCGCTGCTCC TGTGGAGAAGCAGCTTCCTCCACCACAGTAATCGCTGCTCC < 41bp 1 0.706891750985614 1 0.750637590885162 experiment 0.586216498028773 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73481976 chr17:73481987 synonymous SNV . 0 32 hm5C_associated_SNPs_34595 0 0 1 0 2 TMEM94 chr17:73481952 3'AG 73481952 Downstream 36bp
chr17 73481987 73481987 1 + C T SKCM 73481976 + 73481956 73481996 41 TGTGGAGAAGCAGCTTCCTCCACCACAGTAACCGCTGCTCC TGTGGAGAAGCAGCTTCCTCCACCACAGTAATCGCTGCTCC < 41bp 1 0.706891750985614 1 0.750637590885162 experiment 0.586216498028773 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73481976 chr17:73481987 synonymous SNV . 0 32 hm5C_associated_SNPs_34595 0 0 1 0 2 TMEM94 chr17:73482079 5'GT 73482079 Upstream 93bp
chr7 154738098 154738098 1 - G T SKCM 154738116 - 154738096 154738136 41 GATGTTCACAATGCAGAGTTCGTTCTGACTGGAGTGCTCAC GATGTTCACAATGCAGAGTTCGTTCTGACTGGAGTGCTAAC < 41bp 1 0.0421322693860903 1 0.0186048448085785 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAXIP1 ENSG00000157212 CDS Human protein_coding chr7:154738116 chr7:154738098 synonymous SNV . 0 39 hm5C_associated_SNPs_34596 0 0 1 0 1 PAXIP1 chr7:154738135 3'AG 154738135 Downstream 38bp
chr6 43110004 43110004 1 + A T SKCM 43110021 + 43110001 43110041 41 AACATCAAGCACACGGAGGCCCCCCTCTATGTCGTGGGTAT AACTTCAAGCACACGGAGGCCCCCCTCTATGTCGTGGGTAT < 41bp 1 0.0673271849347653 1 0.0580363273620605 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTK7 ENSG00000112655 CDS Human protein_coding chr6:43110021 chr6:43110004 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_34597 0 0 1 0 2 PTK7 chr6:43109910 3'AG 43109910 Downstream 95bp
chr6 43110004 43110004 1 + A T SKCM 43110021 + 43110001 43110041 41 AACATCAAGCACACGGAGGCCCCCCTCTATGTCGTGGGTAT AACTTCAAGCACACGGAGGCCCCCCTCTATGTCGTGGGTAT < 41bp 1 0.0673271849347653 1 0.0580363273620605 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTK7 ENSG00000112655 CDS Human protein_coding chr6:43110021 chr6:43110004 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_34597 0 0 1 0 2 PTK7 chr6:43110037 5'GT 43110037 Upstream 34bp
chr17 73481988 73481988 1 + C T SKCM 73481976 + 73481956 73481996 41 TGTGGAGAAGCAGCTTCCTCCACCACAGTAACCGCTGCTCC TGTGGAGAAGCAGCTTCCTCCACCACAGTAACTGCTGCTCC < 41bp 1 0.675221379068749 1 0.842195153236389 experiment 0.649557241862503 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73481976 chr17:73481988 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_34598 0 0 1 0 2 TMEM94 chr17:73481952 3'AG 73481952 Downstream 37bp
chr17 73481988 73481988 1 + C T SKCM 73481976 + 73481956 73481996 41 TGTGGAGAAGCAGCTTCCTCCACCACAGTAACCGCTGCTCC TGTGGAGAAGCAGCTTCCTCCACCACAGTAACTGCTGCTCC < 41bp 1 0.675221379068749 1 0.842195153236389 experiment 0.649557241862503 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73481976 chr17:73481988 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_34598 0 0 1 0 2 TMEM94 chr17:73482079 5'GT 73482079 Upstream 92bp
chr15 99460079 99460079 1 + C T SKCM 99460083 + 99460063 99460103 41 AAGTCTTTGAGAATTTCCTGCACAACTCCATCTTCGTGCCC AAGTCTTTGAGAATTTTCTGCACAACTCCATCTTCGTGCCC < 41bp 1 0.280794519926295 1 0.113174676895142 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF1R ENSG00000140443 CDS Human protein_coding chr15:99460083 chr15:99460079 synonymous SNV . 0 17 hm5C_associated_SNPs_34599 0 0 1 0 1 IGF1R chr15:99460105 5'GT 99460105 Upstream 27bp
chr12 113379461 113379461 1 + G A SKCM 113379481 + 113379461 113379501 41 GGACCAGAGGGCCCGCCGTGCAGAGATCCTCAGTGAGATGC AGACCAGAGGGCCCGCCGTGCAGAGATCCTCAGTGAGATGC < 41bp 1 0.609926260505963 1 0.355374574661255 experiment 0.780147478988074 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OAS3 ENSG00000111331 CDS Human protein_coding chr12:113379481 chr12:113379461 synonymous SNV . 0 1 hm5C_associated_SNPs_34600 0 0 0 0 1 OAS3 chr12:113379375 3'AG 113379375 Downstream 87bp
chr12 52314566 52314566 1 + G A SKCM 52314578 + 52314558 52314598 41 GCTCAGATGATGCGGGAGTGCTGGTACCCAAACCCCTCTGC GCTCAGATAATGCGGGAGTGCTGGTACCCAAACCCCTCTGC < 41bp 1 0.778283771251926 1 0.344653964042664 experiment 0.443432457496149 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52314578 chr12:52314566 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_34601 0 0 0 0 1 ACVRL1 chr12:52314543 3'AG 52314543 Downstream 24bp
chr11 33667274 33667274 1 + C T SKCM 33667280 + 33667260 33667300 41 ACATTGACAGAGTTCCTGAGCCCCGGGGCTATTCCAGGTCT ACATTGACAGAGTTTCTGAGCCCCGGGGCTATTCCAGGTCT < 41bp 1 0.258526580024677 1 0.177140295505524 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33667280 chr11:33667274 nonsynonymous SNV 0.920 0 15 hm5C_associated_SNPs_34603 0 0 0 0 1 KIAA1549L chr11:33667232 3'AG 33667232 Downstream 43bp
chr17 38151308 38151308 1 + C T SKCM 38151309 + 38151289 38151329 41 GCTCACTCATGCCCTATTTCCTTCTGACTCAAGGTAAGGCT GCTCACTCATGCCCTATTTTCTTCTGACTCAAGGTAAGGCT < 41bp 1 0.342865022861072 1 0.0460131466388702 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38151309 chr17:38151308 synonymous SNV . 0 20 hm5C_associated_SNPs_34604 0 0 1 1 1 PSMD3 chr17:38151321 5'GT 38151321 Upstream 14bp
chr3 38284240 38284240 1 + C T SKCM 38284259 + 38284239 38284279 41 CCGAGTGAAAGAATCAATATCAAATTCTGAGGTAAGTAATT CTGAGTGAAAGAATCAATATCAAATTCTGAGGTAAGTAATT < 41bp 1 0.115759286916779 1 0.172987163066864 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OXSR1 ENSG00000172939 CDS Human protein_coding chr3:38284259 chr3:38284240 stopgain 0.995 1 2 hm5C_associated_SNPs_34605 0 0 1 0 2 OXSR1 chr3:38284234 3'AG 38284234 Downstream 7bp
chr3 38284240 38284240 1 + C T SKCM 38284259 + 38284239 38284279 41 CCGAGTGAAAGAATCAATATCAAATTCTGAGGTAAGTAATT CTGAGTGAAAGAATCAATATCAAATTCTGAGGTAAGTAATT < 41bp 1 0.115759286916779 1 0.172987163066864 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OXSR1 ENSG00000172939 CDS Human protein_coding chr3:38284259 chr3:38284240 stopgain 0.995 1 2 hm5C_associated_SNPs_34605 0 0 1 0 2 OXSR1 chr3:38284269 5'GT 38284269 Upstream 30bp
chr1 114440554 114440554 1 - T C SKCM 114440557 - 114440537 114440577 41 CCTGTATTGTAGTGGTGGTGCAGACTTTCCGAGACCTGGTT CCTGTATTGTAGTGGTGGTGCAGGCTTTCCGAGACCTGGTT < 41bp 1 0.666701302065408 1 0.506517767906189 experiment 0.666597395869184 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4B1 ENSG00000134262 CDS Human protein_coding chr1:114440557 chr1:114440554 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_34608 0 0 0 0 2 AP4B1 chr1:114440462 5'GT 114440462 Upstream 93bp
chr1 114440554 114440554 1 - T C SKCM 114440557 - 114440537 114440577 41 CCTGTATTGTAGTGGTGGTGCAGACTTTCCGAGACCTGGTT CCTGTATTGTAGTGGTGGTGCAGGCTTTCCGAGACCTGGTT < 41bp 1 0.666701302065408 1 0.506517767906189 experiment 0.666597395869184 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4B1 ENSG00000134262 CDS Human protein_coding chr1:114440557 chr1:114440554 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_34608 0 0 0 0 2 AP4B1 chr1:114440565 3'AG 114440565 Downstream 12bp
chr3 150321206 150321206 1 + C T SKCM 150321221 + 150321201 150321241 41 GAGGCCTCGGCCAATCTGGGCGGCGTGCCCAGCAAGAGATT GAGGCTTCGGCCAATCTGGGCGGCGTGCCCAGCAAGAGATT < 41bp 1 0.79580602811781 1 0.500375807285309 experiment 0.40838794376438 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SELENOT ENSG00000198843 CDS Human protein_coding chr3:150321221 chr3:150321206 synonymous SNV . 0 6 hm5C_associated_SNPs_34609 0 0 1 0 1 SELENOT chr3:150321286 5'GT 150321286 Upstream 81bp
chr9 130197476 130197476 1 + C T SKCM 130197488 + 130197468 130197508 41 GGAAAGTCCAGGAGCCTTGTCCTACTAGGTAAGGAAACTGT GGAAAGTCTAGGAGCCTTGTCCTACTAGGTAAGGAAACTGT < 41bp 1 0.0272525858096019 1 0.149799227714539 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF79 ENSG00000196152 CDS Human protein_coding chr9:130197488 chr9:130197476 synonymous SNV . 0 9 hm5C_associated_SNPs_34610 0 0 1 0 1 ZNF79 chr9:130197495 5'GT 130197495 Upstream 20bp
chr12 112926270 112926270 1 + C T SKCM 112926274 + 112926254 112926294 41 ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTTAT ATTGGCCGGACAGGGATGTTCATTGTGATTGATATTCTTAT < 41bp 1 0.191209225188158 1 0.0260994136333466 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926274 chr12:112926270 nonsynonymous SNV 0.971 5 17 hm5C_associated_SNPs_34611 7 0 1 0 2 PTPN11 chr12:112926247 3'AG 112926247 Downstream 24bp
chr12 112926270 112926270 1 + C T SKCM 112926274 + 112926254 112926294 41 ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTTAT ATTGGCCGGACAGGGATGTTCATTGTGATTGATATTCTTAT < 41bp 1 0.191209225188158 1 0.0260994136333466 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926274 chr12:112926270 nonsynonymous SNV 0.971 5 17 hm5C_associated_SNPs_34611 7 0 1 0 2 PTPN11 chr12:112926314 5'GT 112926314 Upstream 45bp
chr3 150321205 150321205 1 + C T SKCM 150321221 + 150321201 150321241 41 GAGGCCTCGGCCAATCTGGGCGGCGTGCCCAGCAAGAGATT GAGGTCTCGGCCAATCTGGGCGGCGTGCCCAGCAAGAGATT < 41bp 1 0.78231099576663 1 0.451493233442307 experiment 0.43537800846674 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SELENOT ENSG00000198843 CDS Human protein_coding chr3:150321221 chr3:150321205 nonsynonymous SNV 1.000 0 5 hm5C_associated_SNPs_34612 0 0 1 0 1 SELENOT chr3:150321286 5'GT 150321286 Upstream 82bp
chr1 874684 874684 1 + C T SKCM 874685 + 874665 874705 41 GCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGACC GCTGCCGCGGGAGCTGGGGTCCAGCATGGCCCCGGAGGACC < 41bp 1 0.599975121083715 1 0.625689446926117 experiment 0.800049757832571 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874685 chr1:874684 nonsynonymous SNV 0.013 0 20 hm5C_associated_SNPs_34613 0 0 0 0 1 SAMD11 chr1:874652 3'AG 874652 Downstream 33bp
chr1 874684 874684 1 + C T SKCM 874694 + 874674 874714 41 GGAGCTGGGGCCCAGCATGGCCCCGGAGGACCATTACCGCC GGAGCTGGGGTCCAGCATGGCCCCGGAGGACCATTACCGCC < 41bp 1 0.649404076116786 1 0.109057426452637 experiment 0.701191847766428 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874694 chr1:874684 nonsynonymous SNV 0.013 0 11 hm5C_associated_SNPs_34614 0 0 0 0 1 SAMD11 chr1:874652 3'AG 874652 Downstream 33bp
chr1 874684 874684 1 + C T SKCM 874695 + 874675 874715 41 GAGCTGGGGCCCAGCATGGCCCCGGAGGACCATTACCGCCG GAGCTGGGGTCCAGCATGGCCCCGGAGGACCATTACCGCCG < 41bp 1 0.758274426451051 1 0.487925410270691 experiment 0.483451147097898 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874695 chr1:874684 nonsynonymous SNV 0.013 0 10 hm5C_associated_SNPs_34615 0 0 0 0 1 SAMD11 chr1:874652 3'AG 874652 Downstream 33bp
chr19 45493754 45493754 1 + G A SKCM 45493744 + 45493724 45493764 41 CAGTCATTCGTGGTCCTCCTCTACATCCTGGACAACGAGAC CAGTCATTCGTGGTCCTCCTCTACATCCTGAACAACGAGAC < 41bp 1 0.719091001211297 1 0.746989130973816 experiment 0.561817997577406 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45493744 chr19:45493754 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_34616 0 0 1 0 1 CLPTM1 chr19:45493843 5'GT 45493843 Upstream 90bp
chr19 45493754 45493754 1 + G A SKCM 45493756 + 45493736 45493776 41 GTCCTCCTCTACATCCTGGACAACGAGACCAACTTCGTGGT GTCCTCCTCTACATCCTGAACAACGAGACCAACTTCGTGGT < 41bp 1 0.518946365786823 1 0.113783627748489 experiment 0.962107268426354 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45493756 chr19:45493754 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_34617 0 0 1 0 1 CLPTM1 chr19:45493843 5'GT 45493843 Upstream 90bp
chr19 45493754 45493754 1 + G A SKCM 45493765 + 45493745 45493785 41 TACATCCTGGACAACGAGACCAACTTCGTGGTCCAGGTCAG TACATCCTGAACAACGAGACCAACTTCGTGGTCCAGGTCAG < 41bp 1 0.294213252505011 1 0.0545165836811066 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45493765 chr19:45493754 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_34618 0 0 1 0 1 CLPTM1 chr19:45493843 5'GT 45493843 Upstream 90bp
chr4 155486961 155486961 1 + G A SKCM 155486953 + 155486933 155486973 41 ATTATATTTCTGCCTCATTCCTTGTAGGGTTTCTTCAGTGC ATTATATTTCTGCCTCATTCCTTGTAGGATTTCTTCAGTGC < 41bp 1 0.120168202684517 1 0.385300755500793 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FGB ENSG00000171564 CDS Human protein_coding chr4:155486953 chr4:155486961 nonsynonymous SNV 0.000 0 29 hm5C_associated_SNPs_34621 0 0 1 0 1 FGB chr4:155486960 3'AG 155486960 Downstream 2bp
chr20 30381768 30381768 1 + C T SKCM 30381750 + 30381730 30381770 41 CAAGAACTGTGGAAATATGCCCTTTCTCGTTTGATTCTCGA CAAGAACTGTGGAAATATGCCCTTTCTCGTTTGATTCTTGA < 41bp 1 0.0192132767759442 1 0.0679475963115692 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30381750 chr20:30381768 stopgain 0.998 1 39 hm5C_associated_SNPs_34622 0 0 1 0 1 TPX2 chr20:30381827 5'GT 30381827 Upstream 60bp
chr20 30381768 30381768 1 + C T SKCM 30381751 + 30381731 30381771 41 AAGAACTGTGGAAATATGCCCTTTCTCGTTTGATTCTCGAG AAGAACTGTGGAAATATGCCCTTTCTCGTTTGATTCTTGAG < 41bp 1 0.0256420865315904 1 0.0603235065937042 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30381751 chr20:30381768 stopgain 0.998 1 38 hm5C_associated_SNPs_34623 0 0 1 0 1 TPX2 chr20:30381827 5'GT 30381827 Upstream 60bp
chr15 89172601 89172601 1 + C T SKCM 89172606 + 89172586 89172626 41 CCCGGCCTCCACACCCGGGCCCGGGTCTCTCTAAAGGACCT CCCGGCCTCCACACCTGGGCCCGGGTCTCTCTAAAGGACCT < 41bp 1 0.4130414019127 1 0.209031820297241 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AEN ENSG00000181026 CDS Human protein_coding chr15:89172606 chr15:89172601 nonsynonymous SNV 0.045 3 16 hm5C_associated_SNPs_34624 0 0 1 0 1 AEN chr15:89172657 5'GT 89172657 Upstream 57bp
chr19 36124044 36124044 1 + C T SKCM 36124053 + 36124033 36124073 41 CTCACCAGGCCCTCGTGGGCCCCCCTCTGCCTGGGCCCCCT CTCACCAGGCCTTCGTGGGCCCCCCTCTGCCTGGGCCCCCT < 41bp 1 0.237371938984562 1 0.0639811158180237 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124053 chr19:36124044 nonsynonymous SNV 0.938 3 12 hm5C_associated_SNPs_34625 0 0 1 0 3 RBM42 chr19:36123979 3'AG 36123979 Downstream 66bp
chr19 36124044 36124044 1 + C T SKCM 36124053 + 36124033 36124073 41 CTCACCAGGCCCTCGTGGGCCCCCCTCTGCCTGGGCCCCCT CTCACCAGGCCTTCGTGGGCCCCCCTCTGCCTGGGCCCCCT < 41bp 1 0.237371938984562 1 0.0639811158180237 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124053 chr19:36124044 nonsynonymous SNV 0.938 3 12 hm5C_associated_SNPs_34625 0 0 1 0 3 RBM42 chr19:36124000 3'AG 36124000 Downstream 45bp
chr19 36124044 36124044 1 + C T SKCM 36124053 + 36124033 36124073 41 CTCACCAGGCCCTCGTGGGCCCCCCTCTGCCTGGGCCCCCT CTCACCAGGCCTTCGTGGGCCCCCCTCTGCCTGGGCCCCCT < 41bp 1 0.237371938984562 1 0.0639811158180237 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124053 chr19:36124044 nonsynonymous SNV 0.938 3 12 hm5C_associated_SNPs_34625 0 0 1 0 3 RBM42 chr19:36124003 3'AG 36124003 Downstream 42bp
chr19 36124043 36124043 1 + C T SKCM 36124053 + 36124033 36124073 41 CTCACCAGGCCCTCGTGGGCCCCCCTCTGCCTGGGCCCCCT CTCACCAGGCTCTCGTGGGCCCCCCTCTGCCTGGGCCCCCT < 41bp 1 0.27725357819583 1 0.0431922674179077 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124053 chr19:36124043 synonymous SNV . 0 11 hm5C_associated_SNPs_34626 0 0 1 0 3 RBM42 chr19:36123979 3'AG 36123979 Downstream 65bp
chr19 36124043 36124043 1 + C T SKCM 36124053 + 36124033 36124073 41 CTCACCAGGCCCTCGTGGGCCCCCCTCTGCCTGGGCCCCCT CTCACCAGGCTCTCGTGGGCCCCCCTCTGCCTGGGCCCCCT < 41bp 1 0.27725357819583 1 0.0431922674179077 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124053 chr19:36124043 synonymous SNV . 0 11 hm5C_associated_SNPs_34626 0 0 1 0 3 RBM42 chr19:36124000 3'AG 36124000 Downstream 44bp
chr19 36124043 36124043 1 + C T SKCM 36124053 + 36124033 36124073 41 CTCACCAGGCCCTCGTGGGCCCCCCTCTGCCTGGGCCCCCT CTCACCAGGCTCTCGTGGGCCCCCCTCTGCCTGGGCCCCCT < 41bp 1 0.27725357819583 1 0.0431922674179077 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124053 chr19:36124043 synonymous SNV . 0 11 hm5C_associated_SNPs_34626 0 0 1 0 3 RBM42 chr19:36124003 3'AG 36124003 Downstream 41bp
chr22 42271656 42271656 1 + A G SKCM 42271638 + 42271618 42271658 41 CAGAATGTCCTTCTGATGTCCCCCCCAGCCTCTGACTCAGG CAGAATGTCCTTCTGATGTCCCCCCCAGCCTCTGACTCGGG < 41bp 1 0.0397421358420783 1 0.0518558025360107 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42271638 chr22:42271656 synonymous SNV . 0 39 hm5C_associated_SNPs_34627 0 0 1 0 1 SREBF2 chr22:42271728 5'GT 42271728 Upstream 73bp
chr11 61630757 61630757 1 + C T SKCM 61630766 + 61630746 61630786 41 TCTTGCAGGTTCCTGGAGAGCCACTGGTTTGTGTGGGTCAC TCTTGCAGGTTTCTGGAGAGCCACTGGTTTGTGTGGGTCAC < 41bp 1 0.191249476410564 1 0.202507019042969 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61630766 chr11:61630757 synonymous SNV . 0 12 hm5C_associated_SNPs_34628 0 0 1 0 2 FADS2 chr11:61630754 3'AG 61630754 Downstream 4bp
chr11 61630757 61630757 1 + C T SKCM 61630766 + 61630746 61630786 41 TCTTGCAGGTTCCTGGAGAGCCACTGGTTTGTGTGGGTCAC TCTTGCAGGTTTCTGGAGAGCCACTGGTTTGTGTGGGTCAC < 41bp 1 0.191249476410564 1 0.202507019042969 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61630766 chr11:61630757 synonymous SNV . 0 12 hm5C_associated_SNPs_34628 0 0 1 0 2 FADS2 chr11:61630850 5'GT 61630850 Upstream 94bp
chrX 154005119 154005119 1 + G A SKCM 154005114 + 154005094 154005134 41 GAAGAAGAAGAAGAAGAAAGCAAAAGAGGTAGAATTGGTTT GAAGAAGAAGAAGAAGAAAGCAAAAAAGGTAGAATTGGTTT < 41bp 1 0.669814959746981 1 0.485008925199509 experiment 0.660370080506038 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DKC1 ENSG00000130826 CDS Human protein_coding chrX:154005114 chrX:154005119 nonsynonymous SNV 0.476 1 26 hm5C_associated_SNPs_34631 0 0 1 0 1 DKC1 chrX:154005074 3'AG 154005074 Downstream 46bp
chrX 154005119 154005119 1 + G A SKCM 154005135 + 154005115 154005155 41 AAAAGAGGTAGAATTGGTTTCTGAGTAGTGAAGGCCACTTG AAAAAAGGTAGAATTGGTTTCTGAGTAGTGAAGGCCACTTG < 41bp 1 0.630051701848233 1 0.304539144039154 experiment 0.739896596303534 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DKC1 ENSG00000130826 CDS Human protein_coding chrX:154005135 chrX:154005119 nonsynonymous SNV 0.476 1 5 hm5C_associated_SNPs_34632 0 0 1 0 1 DKC1 chrX:154005074 3'AG 154005074 Downstream 46bp
chr4 123260561 123260561 1 + C T SKCM 123260543 + 123260523 123260563 41 GAGTGGAACAAAGACTTCTGCTAGCAAAACTGGAATACCAG GAGTGGAACAAAGACTTCTGCTAGCAAAACTGGAATACTAG < 41bp 1 0.109169445537165 1 0.328504383563995 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123260543 chr4:123260561 nonsynonymous SNV 0.945 3 39 hm5C_associated_SNPs_34633 0 0 0 0 1 KIAA1109 chr4:123260563 5'GT 123260563 Upstream 3bp
chrX 47102882 47102882 1 + C T SKCM 47102871 + 47102851 47102891 41 TTCCTGTCTACCTGCGGGAGCGCACCCCTGCCCGTGACTAC TTCCTGTCTACCTGCGGGAGCGCACCCCTGCTCGTGACTAC < 41bp 1 0.164117593306378 1 0.188775539398193 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47102871 chrX:47102882 synonymous SNV . 0 32 hm5C_associated_SNPs_34634 0 0 1 0 1 USP11 chrX:47102795 3'AG 47102795 Downstream 88bp
chr8 86038926 86038926 1 + C T SKCM 86038944 + 86038924 86038964 41 TCCCTTGTTGAACAGCTAGACCAAGAGAGAGAGAAGAGATG TCTCTTGTTGAACAGCTAGACCAAGAGAGAGAGAAGAGATG < 41bp 1 0.227359223063418 1 0.192346274852753 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRCC1 ENSG00000133739 CDS Human protein_coding chr8:86038944 chr8:86038926 synonymous SNV . 0 3 hm5C_associated_SNPs_34636 0 0 0 0 1 LRRCC1 chr8:86038924 3'AG 86038924 Downstream 3bp
chr14 64898334 64898334 1 + C T SKCM 64898346 + 64898326 64898366 41 GGATATTTCATGAACTGACCCAGACAGACAAGGTAGGATGC GGATATTTTATGAACTGACCCAGACAGACAAGGTAGGATGC < 41bp 1 0.251670795599647 1 0.153504639863968 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64898346 chr14:64898334 nonsynonymous SNV 0.972 4 9 hm5C_associated_SNPs_34637 0 0 1 0 2 MTHFD1 chr14:64898250 3'AG 64898250 Downstream 85bp
chr14 64898334 64898334 1 + C T SKCM 64898346 + 64898326 64898366 41 GGATATTTCATGAACTGACCCAGACAGACAAGGTAGGATGC GGATATTTTATGAACTGACCCAGACAGACAAGGTAGGATGC < 41bp 1 0.251670795599647 1 0.153504639863968 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64898346 chr14:64898334 nonsynonymous SNV 0.972 4 9 hm5C_associated_SNPs_34637 0 0 1 0 2 MTHFD1 chr14:64898357 5'GT 64898357 Upstream 24bp
chr14 64898334 64898334 1 + C T SKCM 64898350 + 64898330 64898370 41 ATTTCATGAACTGACCCAGACAGACAAGGTAGGATGCCAAA ATTTTATGAACTGACCCAGACAGACAAGGTAGGATGCCAAA < 41bp 1 0.277479900781873 1 0.133778691291809 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64898350 chr14:64898334 nonsynonymous SNV 0.972 4 5 hm5C_associated_SNPs_34638 0 0 1 0 2 MTHFD1 chr14:64898250 3'AG 64898250 Downstream 85bp
chr14 64898334 64898334 1 + C T SKCM 64898350 + 64898330 64898370 41 ATTTCATGAACTGACCCAGACAGACAAGGTAGGATGCCAAA ATTTTATGAACTGACCCAGACAGACAAGGTAGGATGCCAAA < 41bp 1 0.277479900781873 1 0.133778691291809 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64898350 chr14:64898334 nonsynonymous SNV 0.972 4 5 hm5C_associated_SNPs_34638 0 0 1 0 2 MTHFD1 chr14:64898357 5'GT 64898357 Upstream 24bp
chr9 104307077 104307077 1 + G A SKCM 104307070 + 104307050 104307090 41 TAATCTGATAGTGGAGGAAGCAGTGCAGGAGCTGAACTCTT TAATCTGATAGTGGAGGAAGCAGTGCAAGAGCTGAACTCTT < 41bp 1 0.300447377309355 1 0.780908465385437 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF20 ENSG00000155827 CDS Human protein_coding chr9:104307070 chr9:104307077 synonymous SNV . 0 28 hm5C_associated_SNPs_34639 0 0 1 0 2 RNF20 chr9:104307049 3'AG 104307049 Downstream 29bp
chr9 104307077 104307077 1 + G A SKCM 104307070 + 104307050 104307090 41 TAATCTGATAGTGGAGGAAGCAGTGCAGGAGCTGAACTCTT TAATCTGATAGTGGAGGAAGCAGTGCAAGAGCTGAACTCTT < 41bp 1 0.300447377309355 1 0.780908465385437 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF20 ENSG00000155827 CDS Human protein_coding chr9:104307070 chr9:104307077 synonymous SNV . 0 28 hm5C_associated_SNPs_34639 0 0 1 0 2 RNF20 chr9:104307167 5'GT 104307167 Upstream 91bp
chr9 139734199 139734199 1 + C T SKCM 139734201 + 139734181 139734221 41 GACTGACGAGGATGAGGGCCCTGCCGAGCCGCCCCCACCCC GACTGACGAGGATGAGGGTCCTGCCGAGCCGCCCCCACCCC < 41bp 1 0.465323538154544 1 0.22101104259491 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734201 chr9:139734199 synonymous SNV . 0 19 hm5C_associated_SNPs_34641 0 0 1 0 1 RABL6 chr9:139734146 3'AG 139734146 Downstream 54bp
chr17 4859344 4859344 1 + C T SKCM 4859339 + 4859319 4859359 41 GGGGGATGACTTGACAGTCACCAACCCCAAGAGGATTGCCC GGGGGATGACTTGACAGTCACCAACTCCAAGAGGATTGCCC < 41bp 1 0.108399562311797 1 0.0636754930019379 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859339 chr17:4859344 nonsynonymous SNV 0.999 2 26 hm5C_associated_SNPs_34643 0 0 1 0 1 ENO3 chr17:4859438 5'GT 4859438 Upstream 95bp
chr17 4859344 4859344 1 + C T SKCM 4859340 + 4859320 4859360 41 GGGGATGACTTGACAGTCACCAACCCCAAGAGGATTGCCCA GGGGATGACTTGACAGTCACCAACTCCAAGAGGATTGCCCA < 41bp 1 0.363921298048315 1 0.355515003204346 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859340 chr17:4859344 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_34644 0 0 1 0 1 ENO3 chr17:4859438 5'GT 4859438 Upstream 95bp
chr17 4859344 4859344 1 + C T SKCM 4859345 + 4859325 4859365 41 TGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCCG TGACTTGACAGTCACCAACTCCAAGAGGATTGCCCAGGCCG < 41bp 1 0.248342374356422 1 0.383737832307816 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859345 chr17:4859344 nonsynonymous SNV 0.999 2 20 hm5C_associated_SNPs_34645 0 0 1 0 1 ENO3 chr17:4859438 5'GT 4859438 Upstream 95bp
chr17 4859344 4859344 1 + C T SKCM 4859357 + 4859337 4859377 41 CACCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGG CACCAACTCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGG < 41bp 1 0.278856837668549 1 0.127421826124191 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859357 chr17:4859344 nonsynonymous SNV 0.999 2 8 hm5C_associated_SNPs_34646 0 0 1 0 1 ENO3 chr17:4859438 5'GT 4859438 Upstream 95bp
chr17 4859344 4859344 1 + C T SKCM 4859358 + 4859338 4859378 41 ACCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGC ACCAACTCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGC < 41bp 1 0.290866161053863 1 0.424510419368744 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859358 chr17:4859344 nonsynonymous SNV 0.999 2 7 hm5C_associated_SNPs_34647 0 0 1 0 1 ENO3 chr17:4859438 5'GT 4859438 Upstream 95bp
chr17 4859344 4859344 1 + C T SKCM 4859359 + 4859339 4859379 41 CCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCC CCAACTCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCC < 41bp 1 0.428496790213847 1 0.547518908977509 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859359 chr17:4859344 nonsynonymous SNV 0.999 2 6 hm5C_associated_SNPs_34648 0 0 1 0 1 ENO3 chr17:4859438 5'GT 4859438 Upstream 95bp
chr17 4859344 4859344 1 + C T SKCM 4859363 + 4859343 4859383 41 CCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCA CTCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCA < 41bp 1 0.148597725614515 1 0.0885458886623383 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859363 chr17:4859344 nonsynonymous SNV 0.999 2 2 hm5C_associated_SNPs_34649 0 0 1 0 1 ENO3 chr17:4859438 5'GT 4859438 Upstream 95bp
chr17 4859344 4859344 1 + C T SKCM 4859364 + 4859344 4859384 41 CCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCAA TCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCAA < 41bp 1 0.259996923384463 1 0.311418056488037 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859364 chr17:4859344 nonsynonymous SNV 0.999 2 1 hm5C_associated_SNPs_34650 0 0 1 0 1 ENO3 chr17:4859438 5'GT 4859438 Upstream 95bp
chr16 72142735 72142735 1 + C T SKCM 72142736 + 72142716 72142756 41 GAACATCCGCACAGGGATGCCCTGCCACTTGCACCCCACCA GAACATCCGCACAGGGATGTCCTGCCACTTGCACCCCACCA < 41bp 1 0.131493358664392 1 0.0772619843482971 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72142736 chr16:72142735 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_34651 0 0 1 0 2 DHX38 chr16:72142699 3'AG 72142699 Downstream 37bp
chr16 72142735 72142735 1 + C T SKCM 72142736 + 72142716 72142756 41 GAACATCCGCACAGGGATGCCCTGCCACTTGCACCCCACCA GAACATCCGCACAGGGATGTCCTGCCACTTGCACCCCACCA < 41bp 1 0.131493358664392 1 0.0772619843482971 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72142736 chr16:72142735 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_34651 0 0 1 0 2 DHX38 chr16:72142824 5'GT 72142824 Upstream 90bp
chr9 130434349 130434349 1 + C T SKCM 130434344 + 130434324 130434364 41 TTACAGACCACCATGCGGGACCTGTCCCAGATGCTGAAGAA TTACAGACCACCATGCGGGACCTGTTCCAGATGCTGAAGAA < 41bp 1 0.0436929411984373 1 0.0159619450569153 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130434344 chr9:130434349 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_34652 0 0 1 0 2 STXBP1 chr9:130434330 3'AG 130434330 Downstream 20bp
chr9 130434349 130434349 1 + C T SKCM 130434344 + 130434324 130434364 41 TTACAGACCACCATGCGGGACCTGTCCCAGATGCTGAAGAA TTACAGACCACCATGCGGGACCTGTTCCAGATGCTGAAGAA < 41bp 1 0.0436929411984373 1 0.0159619450569153 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130434344 chr9:130434349 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_34652 0 0 1 0 2 STXBP1 chr9:130434395 5'GT 130434395 Upstream 47bp
chr3 108353762 108353762 1 + C T SKCM 108353763 + 108353743 108353783 41 AAAGTTGCTGTGTTTATTTCCATAAAATTTGCTGGAAAAAG AAAGTTGCTGTGTTTATTTTCATAAAATTTGCTGGAAAAAG < 41bp 1 0.197383234816606 1 0.378414869308472 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108353763 chr3:108353762 synonymous SNV . 0 20 hm5C_associated_SNPs_34653 0 0 0 0 1 DZIP3 chr3:108353819 5'GT 108353819 Upstream 58bp
chr21 44152052 44152052 1 + C T SKCM 44152044 + 44152024 44152064 41 AGGGCTGCTACCAGGAAGGCCAGCGCATCCCTCCAGGTAAC AGGGCTGCTACCAGGAAGGCCAGCGCATTCCTCCAGGTAAC < 41bp 1 0.681174620978421 1 0.345337092876434 experiment 0.637650758043158 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDE9A ENSG00000160191 CDS Human protein_coding chr21:44152044 chr21:44152052 synonymous SNV . 0 29 hm5C_associated_SNPs_34654 0 0 0 0 1 PDE9A chr21:44152059 5'GT 44152059 Upstream 8bp
chr19 49967936 49967936 1 + C T SKCM 49967942 + 49967922 49967962 41 CCTGCCCGGCTGTCCTGCCTCTCCAAGAACCTGAACTATGA CCTGCCCGGCTGTCTTGCCTCTCCAAGAACCTGAACTATGA < 41bp 1 0.765409663342648 1 0.973596394062042 experiment 0.469180673314704 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ALDH16A1 ENSG00000161618 CDS Human other chr19:49967942 chr19:49967936 synonymous SNV . 0 15 hm5C_associated_SNPs_34655 0 0 0 0 2 ALDH16A1 chr19:49967889 3'AG 49967889 Downstream 48bp
chr19 49967936 49967936 1 + C T SKCM 49967942 + 49967922 49967962 41 CCTGCCCGGCTGTCCTGCCTCTCCAAGAACCTGAACTATGA CCTGCCCGGCTGTCTTGCCTCTCCAAGAACCTGAACTATGA < 41bp 1 0.765409663342648 1 0.973596394062042 experiment 0.469180673314704 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49967942 chr19:49967936 synonymous SNV . 0 15 hm5C_associated_SNPs_34655 0 0 0 0 2 ALDH16A1 chr19:49968019 5'GT 49968019 Upstream 84bp
chr6 159181711 159181711 1 + G A SKCM 159181716 + 159181696 159181736 41 CCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAAGCTGGT CCTCAGAGTAATGGAAAGCTCACAGTCCGGGCTAAGCTGGT < 41bp 1 0.578158000197095 1 0.259757936000824 experiment 0.843683999605809 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159181716 chr6:159181711 nonsynonymous SNV 0.091 3 16 hm5C_associated_SNPs_34656 0 0 0 0 2 SYTL3 chr6:159181672 3'AG 159181672 Downstream 40bp
chr6 159181711 159181711 1 + G A SKCM 159181716 + 159181696 159181736 41 CCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAAGCTGGT CCTCAGAGTAATGGAAAGCTCACAGTCCGGGCTAAGCTGGT < 41bp 1 0.578158000197095 1 0.259757936000824 experiment 0.843683999605809 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159181716 chr6:159181711 nonsynonymous SNV 0.091 3 16 hm5C_associated_SNPs_34656 0 0 0 0 2 SYTL3 chr6:159181777 5'GT 159181777 Upstream 67bp
chr3 49060173 49060173 1 + C T SKCM 49060174 + 49060154 49060194 41 TCACCGAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC TCACCGAAGACAGCTTTTCTCTCTTCTGGTTGCTGGAGCCC < 41bp 1 0.447314951779066 1 0.353045672178268 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060174 chr3:49060173 synonymous SNV . 0 20 hm5C_associated_SNPs_34657 0 0 1 0 2 NDUFAF3 chr3:49060135 3'AG 49060135 Downstream 39bp
chr3 49060173 49060173 1 + C T SKCM 49060174 + 49060154 49060194 41 TCACCGAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC TCACCGAAGACAGCTTTTCTCTCTTCTGGTTGCTGGAGCCC < 41bp 1 0.447314951779066 1 0.353045672178268 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060174 chr3:49060173 synonymous SNV . 0 20 hm5C_associated_SNPs_34657 0 0 1 0 2 NDUFAF3 chr3:49060201 5'GT 49060201 Upstream 29bp
chr15 43484963 43484963 1 + A T SKCM 43484957 + 43484937 43484977 41 TTAGTGTGGATGATTTGGCTCTGAGCATATATCCACCTATG TTAGTGTGGATGATTTGGCTCTGAGCTTATATCCACCTATG < 41bp 1 0.645552444859903 1 0.0891839265823364 experiment 0.708895110280194 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCNDBP1 ENSG00000166946 CDS Human protein_coding chr15:43484957 chr15:43484963 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_34659 0 0 1 0 1 CCNDBP1 chr15:43485001 5'GT 43485001 Upstream 39bp
chr6 159181713 159181713 1 + G A SKCM 159181716 + 159181696 159181736 41 CCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAAGCTGGT CCTCAGAGTAATGGAGAACTCACAGTCCGGGCTAAGCTGGT < 41bp 1 0.698001683261316 1 0.305909276008606 experiment 0.603996633477368 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159181716 chr6:159181713 synonymous SNV . 0 18 hm5C_associated_SNPs_34660 0 0 0 0 2 SYTL3 chr6:159181672 3'AG 159181672 Downstream 42bp
chr6 159181713 159181713 1 + G A SKCM 159181716 + 159181696 159181736 41 CCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAAGCTGGT CCTCAGAGTAATGGAGAACTCACAGTCCGGGCTAAGCTGGT < 41bp 1 0.698001683261316 1 0.305909276008606 experiment 0.603996633477368 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159181716 chr6:159181713 synonymous SNV . 0 18 hm5C_associated_SNPs_34660 0 0 0 0 2 SYTL3 chr6:159181777 5'GT 159181777 Upstream 65bp
chr17 27014416 27014416 1 + C T SKCM 27014434 + 27014414 27014454 41 TGCCCACCCTTACAGCCAGGCCTTGATCCAGTATGTTTGTG TGTCCACCCTTACAGCCAGGCCTTGATCCAGTATGTTTGTG < 41bp 1 0.0246596654849962 1 0.0281786918640137 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27014434 chr17:27014416 nonsynonymous SNV 0.989 1 3 hm5C_associated_SNPs_34661 0 0 1 0 2 SUPT6H chr17:27014322 3'AG 27014322 Downstream 95bp
chr17 27014416 27014416 1 + C T SKCM 27014434 + 27014414 27014454 41 TGCCCACCCTTACAGCCAGGCCTTGATCCAGTATGTTTGTG TGTCCACCCTTACAGCCAGGCCTTGATCCAGTATGTTTGTG < 41bp 1 0.0246596654849962 1 0.0281786918640137 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27014434 chr17:27014416 nonsynonymous SNV 0.989 1 3 hm5C_associated_SNPs_34661 0 0 1 0 2 SUPT6H chr17:27014489 5'GT 27014489 Upstream 74bp
chr11 117152336 117152336 1 + C T SKCM 117152351 + 117152331 117152371 41 CATATCCAGTTAGTGAGGAACGGAGCCAAGCTGAGCAGCCT CATATTCAGTTAGTGAGGAACGGAGCCAAGCTGAGCAGCCT < 41bp 1 0.573493312527068 1 0.640980660915375 experiment 0.853013374945863 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152351 chr11:117152336 synonymous SNV . 0 6 hm5C_associated_SNPs_34662 0 0 1 0 2 RNF214 chr11:117152316 3'AG 117152316 Downstream 21bp
chr11 117152336 117152336 1 + C T SKCM 117152351 + 117152331 117152371 41 CATATCCAGTTAGTGAGGAACGGAGCCAAGCTGAGCAGCCT CATATTCAGTTAGTGAGGAACGGAGCCAAGCTGAGCAGCCT < 41bp 1 0.573493312527068 1 0.640980660915375 experiment 0.853013374945863 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152351 chr11:117152336 synonymous SNV . 0 6 hm5C_associated_SNPs_34662 0 0 1 0 2 RNF214 chr11:117152414 5'GT 117152414 Upstream 79bp
chr6 168314949 168314949 1 + G A SKCM 168314938 + 168314918 168314958 41 AGCAAGACCGAGACCTTAGTCGGATCACACTGGATGCTCAA AGCAAGACCGAGACCTTAGTCGGATCACACTAGATGCTCAA < 41bp 1 0.35466157734268 1 0.909610748291016 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168314938 chr6:168314949 synonymous SNV . 0 32 hm5C_associated_SNPs_34663 0 0 1 0 1 AFDN chr6:168314993 5'GT 168314993 Upstream 45bp
chr19 48220223 48220223 1 + G A SKCM 48220221 + 48220201 48220241 41 GCAACGCCCTCGTCGTGGACCCGGACAAGCCCTTCCGCAAA GCAACGCCCTCGTCGTGGACCCAGACAAGCCCTTCCGCAAA < 41bp 1 0.414835728983054 1 0.30385947227478 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EHD2 ENSG00000024422 CDS Human protein_coding chr19:48220221 chr19:48220223 synonymous SNV . 0 23 hm5C_associated_SNPs_34664 0 0 1 0 1 EHD2 chr19:48220273 5'GT 48220273 Upstream 51bp
chr16 85682309 85682309 1 + C T SKCM 85682293 + 85682273 85682313 41 CCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTC CCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATTGCTC < 41bp 1 0.136715822426875 1 0.0740616023540497 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85682293 chr16:85682309 synonymous SNV . 0 37 hm5C_associated_SNPs_34665 0 0 1 0 1 GSE1 chr16:85682357 5'GT 85682357 Upstream 49bp
chr6 33652691 33652691 1 + C T SKCM 33652675 + 33652655 33652695 41 AAGATCTTCCAGGAGAGCATCGGCCTGGCCATCCACCTGCT AAGATCTTCCAGGAGAGCATCGGCCTGGCCATCCACTTGCT < 41bp 1 0.180302907361557 1 0.226409912109375 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33652675 chr6:33652691 synonymous SNV . 0 37 hm5C_associated_SNPs_34666 0 0 1 0 1 ITPR3 chr6:33652720 5'GT 33652720 Upstream 30bp
chr11 107917082 107917082 1 + A G SKCM 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGTTTATTGAGCAAGCACAGGCAGTAAGTTCTACATGC < 41bp 1 0.484865433409705 1 0.469757556915283 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917082 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_34669 0 0 1 1 2 CUL5 chr11:107916997 3'AG 107916997 Downstream 86bp
chr11 107917082 107917082 1 + A G SKCM 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGTTTATTGAGCAAGCACAGGCAGTAAGTTCTACATGC < 41bp 1 0.484865433409705 1 0.469757556915283 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917082 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_34669 0 0 1 1 2 CUL5 chr11:107917096 5'GT 107917096 Upstream 15bp
chr12 53495889 53495889 1 + T A SKCM 53495902 + 53495882 53495922 41 GGGCAAGTCCCTGCCAGGGTCTCCAGATGGCAATGGAAGCT GGGCAAGACCCTGCCAGGGTCTCCAGATGGCAATGGAAGCT < 41bp 1 0.762417909669873 1 0.918596982955933 experiment 0.475164180660254 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IGFBP6 ENSG00000167779 CDS Human protein_coding chr12:53495902 chr12:53495889 nonsynonymous SNV 0.949 1 8 hm5C_associated_SNPs_34671 0 0 0 0 1 IGFBP6 chr12:53495829 3'AG 53495829 Downstream 61bp
chr10 12162788 12162788 1 + C T SKCM 12162801 + 12162781 12162821 41 TATAGCTCCGTCTGGTGGGCCGGCCCCCTTTGCCAGTACCC TATAGCTTCGTCTGGTGGGCCGGCCCCCTTTGCCAGTACCC < 41bp 1 0.179086016580855 1 0.755832672119141 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12162801 chr10:12162788 synonymous SNV . 0 8 hm5C_associated_SNPs_34673 0 0 0 0 1 DHTKD1 chr10:12162786 3'AG 12162786 Downstream 3bp
chr22 35783086 35783086 1 + C T SKCM 35783079 + 35783059 35783099 41 ACCAAGTTCAAGCAGCTCTACCGCTCCCGCATGAACTCCCT ACCAAGTTCAAGCAGCTCTACCGCTCCTGCATGAACTCCCT < 41bp 1 0.155792510434981 1 0.0594518780708313 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35783079 chr22:35783086 nonsynonymous SNV 0.998 4 28 hm5C_associated_SNPs_34674 0 0 1 0 1 HMOX1 chr22:35783169 5'GT 35783169 Upstream 84bp
chr8 145065437 145065437 1 + C T SKCM 145065439 + 145065419 145065459 41 TCTGGGGACAACTATCCTCCCCCCAACCCTGGATATCCGGG TCTGGGGACAACTATCCTTCCCCCAACCCTGGATATCCGGG < 41bp 1 0.383776747428689 1 0.446441680192947 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065439 chr8:145065437 nonsynonymous SNV 0.891 1 19 hm5C_associated_SNPs_34675 0 0 1 0 1 GRINA chr8:145065368 3'AG 145065368 Downstream 70bp
chr19 11422832 11422832 1 + C T SKCM 11422851 + 11422831 11422871 41 TCCTAAAAATCACCAAGACTCAGAGCTTCACCCTGAGTGGG TTCTAAAAATCACCAAGACTCAGAGCTTCACCCTGAGTGGG < 41bp 1 0.665657113027851 1 0.592857956886292 experiment 0.668685773944298 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TSPAN16 ENSG00000130167 CDS Human protein_coding chr19:11422851 chr19:11422832 synonymous SNV . 0 2 hm5C_associated_SNPs_34677 0 0 0 0 2 TSPAN16 chr19:11422815 3'AG 11422815 Downstream 18bp
chr19 11422832 11422832 1 + C T SKCM 11422851 + 11422831 11422871 41 TCCTAAAAATCACCAAGACTCAGAGCTTCACCCTGAGTGGG TTCTAAAAATCACCAAGACTCAGAGCTTCACCCTGAGTGGG < 41bp 1 0.665657113027851 1 0.592857956886292 experiment 0.668685773944298 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TSPAN16 ENSG00000130167 CDS Human protein_coding chr19:11422851 chr19:11422832 synonymous SNV . 0 2 hm5C_associated_SNPs_34677 0 0 0 0 2 TSPAN16 chr19:11422898 5'GT 11422898 Upstream 67bp
chr12 95879672 95879672 1 + C T SKCM 95879655 + 95879635 95879675 41 GCTTTATTTGTATCTCACAGCAAAAGTTCAAACAGACCCTC GCTTTATTTGTATCTCACAGCAAAAGTTCAAACAGACTCTC < 41bp 1 0.555061693571141 1 0.335017472505569 experiment 0.889876612857717 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95879655 chr12:95879672 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_34681 0 0 1 0 2 METAP2 chr12:95879655 3'AG 95879655 Downstream 18bp
chr12 95879672 95879672 1 + C T SKCM 95879655 + 95879635 95879675 41 GCTTTATTTGTATCTCACAGCAAAAGTTCAAACAGACCCTC GCTTTATTTGTATCTCACAGCAAAAGTTCAAACAGACTCTC < 41bp 1 0.555061693571141 1 0.335017472505569 experiment 0.889876612857717 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95879655 chr12:95879672 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_34681 0 0 1 0 2 METAP2 chr12:95879757 5'GT 95879757 Upstream 86bp
chr2 47221612 47221612 1 + C T SKCM 47221605 + 47221585 47221625 41 CATGGGCAAGGAGGAGAGTTCTTTCGCCACTCAGGCCCTGC CATGGGCAAGGAGGAGAGTTCTTTCGCTACTCAGGCCCTGC < 41bp 1 0.0737174638838629 1 0.023982971906662 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47221605 chr2:47221612 synonymous SNV . 0 28 hm5C_associated_SNPs_34682 0 0 1 0 1 TTC7A chr2:47221653 5'GT 47221653 Upstream 42bp
chr15 63128178 63128178 1 + C T SKCM 63128184 + 63128164 63128204 41 GGAGAAGCTCATCTCATCTGCCAAGCAGGTCGCCGCTTCCA GGAGAAGCTCATCTTATCTGCCAAGCAGGTCGCCGCTTCCA < 41bp 1 0.0608963567899836 1 0.288959741592407 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63128184 chr15:63128178 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_34683 0 0 0 0 2 TLN2 chr15:63128090 3'AG 63128090 Downstream 89bp
chr15 63128178 63128178 1 + C T SKCM 63128184 + 63128164 63128204 41 GGAGAAGCTCATCTCATCTGCCAAGCAGGTCGCCGCTTCCA GGAGAAGCTCATCTTATCTGCCAAGCAGGTCGCCGCTTCCA < 41bp 1 0.0608963567899836 1 0.288959741592407 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63128184 chr15:63128178 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_34683 0 0 0 0 2 TLN2 chr15:63128272 5'GT 63128272 Upstream 95bp
chr9 33366686 33366686 1 + C T SKCM 33366677 + 33366657 33366697 41 CCTCCCATGAACAGAGACCACCGCCGGATCATCCATGACTT CCTCCCATGAACAGAGACCACCGCCGGATTATCCATGACTT < 41bp 1 0.222711159883963 1 0.1274553835392 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33366677 chr9:33366686 synonymous SNV . 0 30 hm5C_associated_SNPs_34684 0 0 1 0 2 NFX1 chr9:33366627 3'AG 33366627 Downstream 60bp
chr9 33366686 33366686 1 + C T SKCM 33366677 + 33366657 33366697 41 CCTCCCATGAACAGAGACCACCGCCGGATCATCCATGACTT CCTCCCATGAACAGAGACCACCGCCGGATTATCCATGACTT < 41bp 1 0.222711159883963 1 0.1274553835392 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33366677 chr9:33366686 synonymous SNV . 0 30 hm5C_associated_SNPs_34684 0 0 1 0 2 NFX1 chr9:33366772 5'GT 33366772 Upstream 87bp
chr19 36227621 36227621 1 + C T SKCM 36227620 + 36227600 36227640 41 CGAGCTCTGAGGAAGAGCCTCCATCCCCAGATGATAAAGAG CGAGCTCTGAGGAAGAGCCTCTATCCCCAGATGATAAAGAG < 41bp 1 0.0217149691141747 1 0.11944454908371 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36227620 chr19:36227621 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_34687 0 0 1 0 1 KMT2B chr19:36227591 3'AG 36227591 Downstream 31bp
chr7 55259447 55259447 1 + C T SKCM 55259432 + 55259412 55259452 41 GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGA GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCATCGCGA < 41bp 1 0.0616313475198578 1 0.245875597000122 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55259432 chr7:55259447 synonymous SNV . 0 36 hm5C_associated_SNPs_34688 0 0 1 0 1 EGFR chr7:55259412 3'AG 55259412 Downstream 36bp
chrX 70344182 70344182 1 + C T SKCM 70344193 + 70344173 70344213 41 TTTGATGATCCTGCCGATGACCCAGAGCACAAGGAGGCTGA TTTGATGATTCTGCCGATGACCCAGAGCACAAGGAGGCTGA < 41bp 1 0.354892331342569 1 0.181271106004715 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70344193 chrX:70344182 nonsynonymous SNV 0.984 1 10 hm5C_associated_SNPs_34689 0 0 1 0 1 MED12 chrX:70344238 5'GT 70344238 Upstream 57bp
chr1 116932243 116932243 1 + C T SKCM 116932239 + 116932219 116932259 41 TCTTTCTTCATCCTTTCTCTCATCCTTGAGTACACCTGGCT TCTTTCTTCATCCTTTCTCTCATCTTTGAGTACACCTGGCT < 41bp 1 0.179481971875092 1 0.167437642812729 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116932239 chr1:116932243 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_34690 0 0 1 0 1 ATP1A1 chr1:116932329 5'GT 116932329 Upstream 87bp
chr4 6642901 6642901 1 + C T SKCM 6642888 + 6642868 6642908 41 GGCCAAGAGGTGCGAGAAGGCCGAGGAGAAGGCCAAGGAGA GGCCAAGAGGTGCGAGAAGGCCGAGGAGAAGGCTAAGGAGA < 41bp 1 0.725098746755923 1 0.74713408946991 experiment 0.549802506488154 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRFAP1 ENSG00000179010 CDS Human protein_coding chr4:6642888 chr4:6642901 synonymous SNV . 0 34 hm5C_associated_SNPs_34691 0 0 1 0 1 MRFAP1 chr4:6642985 5'GT 6642985 Upstream 85bp
chr9 134067664 134067664 1 + C T SKCM 134067670 + 134067650 134067690 41 CAGCAAGCCTTTCTCATTTTCTCCATCAGGGTCAGTAATGA CAGCAAGCCTTTCTTATTTTCTCCATCAGGGTCAGTAATGA < 41bp 1 0.503273395813748 1 0.972947716712952 experiment 0.993453208372504 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NUP214 ENSG00000126883 CDS Human protein_coding chr9:134067670 chr9:134067664 nonsynonymous SNV 0.998 3 15 hm5C_associated_SNPs_34692 0 0 1 0 1 NUP214 chr9:134067595 3'AG 134067595 Downstream 70bp
chr14 71428979 71428979 1 + C T SKCM 71428988 + 71428968 71429008 41 TCTGAGTTCATCCGAGAGGCCACACCCCCAGTTGGTTGCAG TCTGAGTTCATTCGAGAGGCCACACCCCCAGTTGGTTGCAG < 41bp 1 0.118208117463004 1 0.0642398595809937 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71428988 chr14:71428979 synonymous SNV . 0 12 hm5C_associated_SNPs_34694 0 0 1 0 2 PCNX1 chr14:71428943 3'AG 71428943 Downstream 37bp
chr14 71428979 71428979 1 + C T SKCM 71428988 + 71428968 71429008 41 TCTGAGTTCATCCGAGAGGCCACACCCCCAGTTGGTTGCAG TCTGAGTTCATTCGAGAGGCCACACCCCCAGTTGGTTGCAG < 41bp 1 0.118208117463004 1 0.0642398595809937 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71428988 chr14:71428979 synonymous SNV . 0 12 hm5C_associated_SNPs_34694 0 0 1 0 2 PCNX1 chr14:71429048 5'GT 71429048 Upstream 70bp
chr1 118499763 118499763 1 + C T SKCM 118499775 + 118499755 118499795 41 AACGAATTCATTCAGCTGGGCTCTGATGTTGAACTTATATG AACGAATTTATTCAGCTGGGCTCTGATGTTGAACTTATATG < 41bp 1 0.162184479697132 1 0.077113151550293 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR3 ENSG00000065183 CDS Human protein_coding chr1:118499775 chr1:118499763 synonymous SNV . 0 9 hm5C_associated_SNPs_34696 0 0 1 0 2 WDR3 chr1:118499691 3'AG 118499691 Downstream 73bp
chr1 118499763 118499763 1 + C T SKCM 118499775 + 118499755 118499795 41 AACGAATTCATTCAGCTGGGCTCTGATGTTGAACTTATATG AACGAATTTATTCAGCTGGGCTCTGATGTTGAACTTATATG < 41bp 1 0.162184479697132 1 0.077113151550293 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR3 ENSG00000065183 CDS Human protein_coding chr1:118499775 chr1:118499763 synonymous SNV . 0 9 hm5C_associated_SNPs_34696 0 0 1 0 2 WDR3 chr1:118499819 5'GT 118499819 Upstream 57bp
chr15 93482839 93482839 1 + C T SKCM 93482840 + 93482820 93482860 41 ACCTCGTGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGA ACCTCGTGTTAAAAAGCAGTCGAAGACTCAGCGTGGAAAGA < 41bp 1 0.190750869362509 1 0.414956122636795 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482840 chr15:93482839 nonsynonymous SNV 0.986 0 20 hm5C_associated_SNPs_34697 0 0 1 0 1 CHD2 chr15:93482808 3'AG 93482808 Downstream 32bp
chr15 93482839 93482839 1 + C T SKCM 93482846 + 93482826 93482866 41 TGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAAAA TGTTAAAAAGCAGTCGAAGACTCAGCGTGGAAAGAGAAAAA < 41bp 1 0.323127965694104 1 0.511764824390411 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482846 chr15:93482839 nonsynonymous SNV 0.986 0 14 hm5C_associated_SNPs_34698 0 0 1 0 1 CHD2 chr15:93482808 3'AG 93482808 Downstream 32bp
chr15 93482839 93482839 1 + C T SKCM 93482848 + 93482828 93482868 41 TTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAAAAAG TTAAAAAGCAGTCGAAGACTCAGCGTGGAAAGAGAAAAAAG < 41bp 1 0.478522838030166 1 0.736753821372986 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482848 chr15:93482839 nonsynonymous SNV 0.986 0 12 hm5C_associated_SNPs_34699 0 0 1 0 1 CHD2 chr15:93482808 3'AG 93482808 Downstream 32bp
chr7 116199076 116199076 1 + C T SKCM 116199065 + 116199045 116199085 41 TTTGACGGCATTTGGAAGGCCAGCTTCACCACCTTCACTGT TTTGACGGCATTTGGAAGGCCAGCTTCACCATCTTCACTGT < 41bp 1 0.418623780259599 1 0.260498285293579 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAV1 ENSG00000105974 CDS Human protein_coding chr7:116199065 chr7:116199076 nonsynonymous SNV 0.996 2 32 hm5C_associated_SNPs_34700 0 0 0 3 1 CAV1 chr7:116199000 3'AG 116199000 Downstream 77bp
chr7 73944176 73944176 1 + C T SKCM 73944163 + 73944143 73944183 41 GGGCATCCCGGACAAGATCCCCTTCAAGCGCCCCTGCACTT GGGCATCCCGGACAAGATCCCCTTCAAGCGCCCTTGCACTT < 41bp 1 0.022442932495948 1 0.119347810745239 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73944163 chr7:73944176 synonymous SNV . 0 34 hm5C_associated_SNPs_34702 0 0 1 0 1 GTF2IRD1 chr7:73944247 5'GT 73944247 Upstream 72bp
chr7 73944175 73944175 1 + C T SKCM 73944163 + 73944143 73944183 41 GGGCATCCCGGACAAGATCCCCTTCAAGCGCCCCTGCACTT GGGCATCCCGGACAAGATCCCCTTCAAGCGCCTCTGCACTT < 41bp 1 0.023705890297377 1 0.0824869573116302 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73944163 chr7:73944175 nonsynonymous SNV 0.985 4 33 hm5C_associated_SNPs_34704 0 0 1 0 1 GTF2IRD1 chr7:73944247 5'GT 73944247 Upstream 73bp
chr4 6642900 6642900 1 + C T SKCM 6642888 + 6642868 6642908 41 GGCCAAGAGGTGCGAGAAGGCCGAGGAGAAGGCCAAGGAGA GGCCAAGAGGTGCGAGAAGGCCGAGGAGAAGGTCAAGGAGA < 41bp 1 0.741578249040608 1 0.681453049182892 experiment 0.516843501918785 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRFAP1 ENSG00000179010 CDS Human protein_coding chr4:6642888 chr4:6642900 nonsynonymous SNV 0.965 2 33 hm5C_associated_SNPs_34706 0 0 1 0 1 MRFAP1 chr4:6642985 5'GT 6642985 Upstream 86bp
chr15 93482840 93482840 1 + C T SKCM 93482839 + 93482819 93482859 41 AACCTCGTGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAG AACCTCGTGTTAAAAAGCAGCTGAAGACTCAGCGTGGAAAG < 41bp 1 0.42325246322339 1 0.0860512852668762 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482839 chr15:93482840 nonsynonymous SNV 0.987 0 22 hm5C_associated_SNPs_34707 0 0 1 0 1 CHD2 chr15:93482808 3'AG 93482808 Downstream 33bp
chr15 93482840 93482840 1 + C T SKCM 93482846 + 93482826 93482866 41 TGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAAAA TGTTAAAAAGCAGCTGAAGACTCAGCGTGGAAAGAGAAAAA < 41bp 1 0.319777250098293 1 0.615351855754852 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482846 chr15:93482840 nonsynonymous SNV 0.987 0 15 hm5C_associated_SNPs_34708 0 0 1 0 1 CHD2 chr15:93482808 3'AG 93482808 Downstream 33bp
chr15 93482840 93482840 1 + C T SKCM 93482848 + 93482828 93482868 41 TTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAAAAAG TTAAAAAGCAGCTGAAGACTCAGCGTGGAAAGAGAAAAAAG < 41bp 1 0.532461166890651 1 0.758452653884888 experiment 0.935077666218697 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482848 chr15:93482840 nonsynonymous SNV 0.987 0 13 hm5C_associated_SNPs_34709 0 0 1 0 1 CHD2 chr15:93482808 3'AG 93482808 Downstream 33bp
chr7 56136241 56136241 1 + C T SKCM 56136260 + 56136240 56136280 41 CCAGACAGCAGAGATGGTGACGGGCCTGTGCGGGAGGCGAC CTAGACAGCAGAGATGGTGACGGGCCTGTGCGGGAGGCGAC < 41bp 1 0.59414024562175 1 0.685908079147339 experiment 0.8117195087565 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUMF2 ENSG00000129103 CDS Human protein_coding chr7:56136260 chr7:56136241 nonsynonymous SNV 0.999 2 2 hm5C_associated_SNPs_34710 0 0 1 0 2 SUMF2 chr7:56136175 3'AG 56136175 Downstream 67bp
chr7 56136241 56136241 1 + C T SKCM 56136260 + 56136240 56136280 41 CCAGACAGCAGAGATGGTGACGGGCCTGTGCGGGAGGCGAC CTAGACAGCAGAGATGGTGACGGGCCTGTGCGGGAGGCGAC < 41bp 1 0.59414024562175 1 0.685908079147339 experiment 0.8117195087565 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUMF2 ENSG00000129103 CDS Human protein_coding chr7:56136260 chr7:56136241 nonsynonymous SNV 0.999 2 2 hm5C_associated_SNPs_34710 0 0 1 0 2 SUMF2 chr7:56136331 5'GT 56136331 Upstream 91bp
chr11 121495971 121495971 1 + G A SKCM 121495977 + 121495957 121495997 41 CCATCCTGCTGTACGATGAGCTGGGGTCTGGTGAGTTGCGA CCATCCTGCTGTACAATGAGCTGGGGTCTGGTGAGTTGCGA < 41bp 1 0.472276264801215 1 0.4044229388237 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SORL1 ENSG00000137642 CDS Human protein_coding chr11:121495977 chr11:121495971 nonsynonymous SNV 0.784 2 15 hm5C_associated_SNPs_34711 0 0 1 0 1 SORL1 chr11:121495986 5'GT 121495986 Upstream 16bp
chr2 71901333 71901333 1 + T C SKCM 71901331 + 71901311 71901351 41 TCCTCTTCCGGGTCAGGATGCCTTCTGGAGGCTGGACAAGA TCCTCTTCCGGGTCAGGATGCCCTCTGGAGGCTGGACAAGA < 41bp 1 0.0533134075485276 1 0.0318058729171753 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71901331 chr2:71901333 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_34713 0 0 0 0 2 DYSF chr2:71901327 3'AG 71901327 Downstream 7bp
chr2 71901333 71901333 1 + T C SKCM 71901331 + 71901311 71901351 41 TCCTCTTCCGGGTCAGGATGCCTTCTGGAGGCTGGACAAGA TCCTCTTCCGGGTCAGGATGCCCTCTGGAGGCTGGACAAGA < 41bp 1 0.0533134075485276 1 0.0318058729171753 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71901331 chr2:71901333 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_34713 0 0 0 0 2 DYSF chr2:71901426 5'GT 71901426 Upstream 94bp
chr1 55072900 55072900 1 + C T SKCM 55072914 + 55072894 55072934 41 GGACTTCGTGATCCTGGCCTCGAGGCGGAAGCCTTGTGACA GGACTTTGTGATCCTGGCCTCGAGGCGGAAGCCTTGTGACA < 41bp 1 0.685144294404035 1 0.910919904708862 experiment 0.629711411191931 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55072914 chr1:55072900 synonymous SNV . 0 7 hm5C_associated_SNPs_34714 0 0 0 0 2 ACOT11 chr1:55072807 3'AG 55072807 Downstream 94bp
chr1 55072900 55072900 1 + C T SKCM 55072914 + 55072894 55072934 41 GGACTTCGTGATCCTGGCCTCGAGGCGGAAGCCTTGTGACA GGACTTTGTGATCCTGGCCTCGAGGCGGAAGCCTTGTGACA < 41bp 1 0.685144294404035 1 0.910919904708862 experiment 0.629711411191931 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55072914 chr1:55072900 synonymous SNV . 0 7 hm5C_associated_SNPs_34714 0 0 0 0 2 ACOT11 chr1:55072938 5'GT 55072938 Upstream 39bp
chr2 27302058 27302058 1 + G A SKCM 27302048 + 27302028 27302068 41 ACACAGGTTCCAGTGGGGCCCTCAGCCCCGGGGGGCCCCAG ACACAGGTTCCAGTGGGGCCCTCAGCCCCGAGGGGCCCCAG < 41bp 1 0.568368717213443 1 0.300880551338196 experiment 0.863262565573114 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302048 chr2:27302058 nonsynonymous SNV 0.112 1 31 hm5C_associated_SNPs_34715 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 46bp
chr2 27302058 27302058 1 + G A SKCM 27302063 + 27302043 27302083 41 GGGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCC GGGCCCTCAGCCCCGAGGGGCCCCAGGCCCAGATTGCCCCC < 41bp 1 0.346508405660666 1 0.114199042320251 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302063 chr2:27302058 nonsynonymous SNV 0.112 1 16 hm5C_associated_SNPs_34716 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 46bp
chr2 27302058 27302058 1 + G A SKCM 27302064 + 27302044 27302084 41 GGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCC GGCCCTCAGCCCCGAGGGGCCCCAGGCCCAGATTGCCCCCC < 41bp 1 0.316628127615121 1 0.368856489658356 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302064 chr2:27302058 nonsynonymous SNV 0.112 1 15 hm5C_associated_SNPs_34717 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 46bp
chr2 27302058 27302058 1 + G A SKCM 27302065 + 27302045 27302085 41 GCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCG GCCCTCAGCCCCGAGGGGCCCCAGGCCCAGATTGCCCCCCG < 41bp 1 0.572841494144388 1 0.481573522090912 experiment 0.854317011711224 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302065 chr2:27302058 nonsynonymous SNV 0.112 1 14 hm5C_associated_SNPs_34718 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 46bp
chr2 27302058 27302058 1 + G A SKCM 27302066 + 27302046 27302086 41 CCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCGG CCCTCAGCCCCGAGGGGCCCCAGGCCCAGATTGCCCCCCGG < 41bp 1 0.55049569225835 1 0.737744212150574 experiment 0.899008615483299 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302066 chr2:27302058 nonsynonymous SNV 0.112 1 13 hm5C_associated_SNPs_34719 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 46bp
chr12 94562988 94562988 1 + C T SKCM 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATCCATTCTGACCTGACATCCGTTTATGGCACCGTGGTAAT < 41bp 1 0.0644996685901793 1 0.0567764937877655 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94562988 synonymous SNV . 0 9 hm5C_associated_SNPs_34720 0 0 1 0 2 PLXNC1 chr12:94562929 3'AG 94562929 Downstream 60bp
chr12 94562988 94562988 1 + C T SKCM 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATCCATTCTGACCTGACATCCGTTTATGGCACCGTGGTAAT < 41bp 1 0.0644996685901793 1 0.0567764937877655 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94562988 synonymous SNV . 0 9 hm5C_associated_SNPs_34720 0 0 1 0 2 PLXNC1 chr12:94563069 5'GT 94563069 Upstream 82bp
chrX 57515256 57515256 1 + C T SKCM 57515266 + 57515246 57515286 41 AAAGGACTCCCTTTAGGCATCCAGGTTGTGGCTGGACCCTT AAAGGACTCCTTTTAGGCATCCAGGTTGTGGCTGGACCCTT < 41bp 1 0.556351007195995 1 0.861456513404846 experiment 0.887297985608011 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57515266 chrX:57515256 nonsynonymous SNV 0.914 4 11 hm5C_associated_SNPs_34721 0 0 0 0 1 FAAH2 chrX:57515190 3'AG 57515190 Downstream 67bp
chr2 242396268 242396268 1 + C T SKCM 242396274 + 242396254 242396294 41 GAACAGGGCTCATCCCCACTCCTGAGCCCTGTCCTCAGTGA GAACAGGGCTCATCTCCACTCCTGAGCCCTGTCCTCAGTGA < 41bp 1 0.594903355195504 1 0.370950400829315 experiment 0.810193289608992 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FARP2 ENSG00000006607 CDS Human protein_coding chr2:242396274 chr2:242396268 synonymous SNV . 0 15 hm5C_associated_SNPs_34722 0 0 0 0 1 FARP2 chr2:242396337 5'GT 242396337 Upstream 70bp
chr17 78082400 78082400 1 + C T SKCM 78082382 + 78082362 78082402 41 ACCCGCCAGGTGGTGGAGAACATGACCAGGGCCCACTTCCC ACCCGCCAGGTGGTGGAGAACATGACCAGGGCCCACTTTCC < 41bp 1 0.752533375650264 1 0.185402691364288 experiment 0.494933248699471 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082382 chr17:78082400 synonymous SNV . 0 39 hm5C_associated_SNPs_34725 0 0 0 0 1 GAA chr17:78082406 5'GT 78082406 Upstream 7bp
chr17 78082400 78082400 1 + C T SKCM 78082404 + 78082384 78082424 41 TGACCAGGGCCCACTTCCCCCTGGTGAGTTGGGGTGGTGGC TGACCAGGGCCCACTTTCCCCTGGTGAGTTGGGGTGGTGGC < 41bp 1 0.669638640034523 1 0.238395184278488 experiment 0.660722719930954 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082404 chr17:78082400 synonymous SNV . 0 17 hm5C_associated_SNPs_34726 0 0 0 0 1 GAA chr17:78082406 5'GT 78082406 Upstream 7bp
chr7 794309 794309 1 + G A SKCM 794297 + 794277 794317 41 AGATCCTCCCTGCCCTGTGCCACGACATCACCGACTGGGTG AGATCCTCCCTGCCCTGTGCCACGACATCACCAACTGGGTG < 41bp 1 0.706947416206986 1 0.141337722539902 experiment 0.586105167586028 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:794297 chr7:794309 nonsynonymous SNV 0.891 3 33 hm5C_associated_SNPs_34727 0 0 1 0 1 DNAAF5 chr7:794226 3'AG 794226 Downstream 84bp
chr17 4720032 4720032 1 + C T SKCM 4720020 + 4720000 4720040 41 TTATCACCAAGGACTGGGTGCAGCTGGACCGGCCTTTCGAA TTATCACCAAGGACTGGGTGCAGCTGGACCGGTCTTTCGAA < 41bp 1 0.326681295067275 1 0.162841022014618 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD2 ENSG00000129219 CDS Human protein_coding chr17:4720020 chr17:4720032 nonsynonymous SNV 0.996 3 33 hm5C_associated_SNPs_34729 0 0 1 0 1 PLD2 chr17:4720041 5'GT 4720041 Upstream 10bp
chr21 30422476 30422476 1 + C T SKCM 30422456 + 30422436 30422476 41 TAACAAACACATAAAGTTTCCGGAAATCTTAGATTTGGCTC TAACAAACACATAAAGTTTCCGGAAATCTTAGATTTGGCTT < 41bp 1 0.753529905440174 1 0.499604523181915 experiment 0.492940189119653 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP16 ENSG00000156256 CDS Human protein_coding chr21:30422456 chr21:30422476 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_34730 0 0 1 0 2 USP16 chr21:30422413 3'AG 30422413 Downstream 64bp
chr21 30422476 30422476 1 + C T SKCM 30422456 + 30422436 30422476 41 TAACAAACACATAAAGTTTCCGGAAATCTTAGATTTGGCTC TAACAAACACATAAAGTTTCCGGAAATCTTAGATTTGGCTT < 41bp 1 0.753529905440174 1 0.499604523181915 experiment 0.492940189119653 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP16 ENSG00000156256 CDS Human protein_coding chr21:30422456 chr21:30422476 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_34730 0 0 1 0 2 USP16 chr21:30422499 5'GT 30422499 Upstream 24bp
chr7 142458485 142458485 1 + C T SKCM 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCTC < 41bp 1 0.162101729389184 1 0.199498236179352 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458485 synonymous SNV . 0 40 hm5C_associated_SNPs_34731 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 80bp
chr7 142458485 142458485 1 + C T SKCM 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCTC < 41bp 1 0.162101729389184 1 0.199498236179352 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458485 synonymous SNV . 0 40 hm5C_associated_SNPs_34731 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 6bp
chr7 142458485 142458485 1 + C T SKCM 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCTC < 41bp 1 0.162101729389184 1 0.199498236179352 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458485 synonymous SNV . 0 40 hm5C_associated_SNPs_34731 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 81bp
chr7 142458485 142458485 1 + C T SKCM 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCTCTGAA < 41bp 1 0.107639202096879 1 0.157806277275085 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458485 synonymous SNV . 0 36 hm5C_associated_SNPs_34732 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 80bp
chr7 142458485 142458485 1 + C T SKCM 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCTCTGAA < 41bp 1 0.107639202096879 1 0.157806277275085 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458485 synonymous SNV . 0 36 hm5C_associated_SNPs_34732 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 6bp
chr7 142458485 142458485 1 + C T SKCM 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCTCTGAA < 41bp 1 0.107639202096879 1 0.157806277275085 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458485 synonymous SNV . 0 36 hm5C_associated_SNPs_34732 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 81bp
chr7 142458485 142458485 1 + C T SKCM 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCTCTGAAT < 41bp 1 0.110243533295584 1 0.0821109414100647 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458485 synonymous SNV . 0 35 hm5C_associated_SNPs_34733 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 80bp
chr7 142458485 142458485 1 + C T SKCM 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCTCTGAAT < 41bp 1 0.110243533295584 1 0.0821109414100647 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458485 synonymous SNV . 0 35 hm5C_associated_SNPs_34733 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 6bp
chr7 142458485 142458485 1 + C T SKCM 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCTCTGAAT < 41bp 1 0.110243533295584 1 0.0821109414100647 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458485 synonymous SNV . 0 35 hm5C_associated_SNPs_34733 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 81bp
chr7 142458485 142458485 1 + C T SKCM 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCTCTGAATT < 41bp 1 0.0148355272736477 1 0.0421867072582245 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458485 synonymous SNV . 0 34 hm5C_associated_SNPs_34734 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 80bp
chr7 142458485 142458485 1 + C T SKCM 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCTCTGAATT < 41bp 1 0.0148355272736477 1 0.0421867072582245 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458485 synonymous SNV . 0 34 hm5C_associated_SNPs_34734 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 6bp
chr7 142458485 142458485 1 + C T SKCM 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCTCTGAATT < 41bp 1 0.0148355272736477 1 0.0421867072582245 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458485 synonymous SNV . 0 34 hm5C_associated_SNPs_34734 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 81bp
chr7 142458485 142458485 1 + C T SKCM 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCTCTGAATTC < 41bp 1 0.147560662344687 1 0.0436622798442841 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458485 synonymous SNV . 0 33 hm5C_associated_SNPs_34735 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 80bp
chr7 142458485 142458485 1 + C T SKCM 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCTCTGAATTC < 41bp 1 0.147560662344687 1 0.0436622798442841 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458485 synonymous SNV . 0 33 hm5C_associated_SNPs_34735 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 6bp
chr7 142458485 142458485 1 + C T SKCM 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCTCTGAATTC < 41bp 1 0.147560662344687 1 0.0436622798442841 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458485 synonymous SNV . 0 33 hm5C_associated_SNPs_34735 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 81bp
chr7 142458485 142458485 1 + C T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCCTACCAGGTGTCTCTGAATTCTGG < 41bp 1 0.18160473096652 1 0.130084156990051 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458485 synonymous SNV . 0 30 hm5C_associated_SNPs_34736 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 80bp
chr7 142458485 142458485 1 + C T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCCTACCAGGTGTCTCTGAATTCTGG < 41bp 1 0.18160473096652 1 0.130084156990051 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458485 synonymous SNV . 0 30 hm5C_associated_SNPs_34736 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 6bp
chr7 142458485 142458485 1 + C T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCCTACCAGGTGTCTCTGAATTCTGG < 41bp 1 0.18160473096652 1 0.130084156990051 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458485 synonymous SNV . 0 30 hm5C_associated_SNPs_34736 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 81bp
chr7 142458485 142458485 1 + C T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTACCAGGTGTCTCTGAATTCTGGC < 41bp 1 0.615511147640944 1 0.757321894168854 experiment 0.768977704718111 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458485 synonymous SNV . 0 29 hm5C_associated_SNPs_34737 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 80bp
chr7 142458485 142458485 1 + C T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTACCAGGTGTCTCTGAATTCTGGC < 41bp 1 0.615511147640944 1 0.757321894168854 experiment 0.768977704718111 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458485 synonymous SNV . 0 29 hm5C_associated_SNPs_34737 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 6bp
chr7 142458485 142458485 1 + C T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTACCAGGTGTCTCTGAATTCTGGC < 41bp 1 0.615511147640944 1 0.757321894168854 experiment 0.768977704718111 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458485 synonymous SNV . 0 29 hm5C_associated_SNPs_34737 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 81bp
chr7 142458485 142458485 1 + C T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACCAGGTGTCTCTGAATTCTGGCTACCACT < 41bp 1 0.254521240108281 1 0.194337010383606 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458485 synonymous SNV . 0 22 hm5C_associated_SNPs_34738 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 80bp
chr7 142458485 142458485 1 + C T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACCAGGTGTCTCTGAATTCTGGCTACCACT < 41bp 1 0.254521240108281 1 0.194337010383606 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458485 synonymous SNV . 0 22 hm5C_associated_SNPs_34738 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 6bp
chr7 142458485 142458485 1 + C T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACCAGGTGTCTCTGAATTCTGGCTACCACT < 41bp 1 0.254521240108281 1 0.194337010383606 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458485 synonymous SNV . 0 22 hm5C_associated_SNPs_34738 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 81bp
chr7 142458485 142458485 1 + C T SKCM 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTACCAGGTGTCTCTGAATTCTGGCTACCACTTC < 41bp 1 0.775412719455556 1 0.583949744701385 experiment 0.449174561088887 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458485 synonymous SNV . 0 20 hm5C_associated_SNPs_34739 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 80bp
chr7 142458485 142458485 1 + C T SKCM 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTACCAGGTGTCTCTGAATTCTGGCTACCACTTC < 41bp 1 0.775412719455556 1 0.583949744701385 experiment 0.449174561088887 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458485 synonymous SNV . 0 20 hm5C_associated_SNPs_34739 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 6bp
chr7 142458485 142458485 1 + C T SKCM 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTACCAGGTGTCTCTGAATTCTGGCTACCACTTC < 41bp 1 0.775412719455556 1 0.583949744701385 experiment 0.449174561088887 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458485 synonymous SNV . 0 20 hm5C_associated_SNPs_34739 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 81bp
chr7 142458485 142458485 1 + C T SKCM 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG CTACCAGGTGTCTCTGAATTCTGGCTACCACTTCTGTGGTG < 41bp 1 0.775722877241643 1 0.76811158657074 experiment 0.448554245516714 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458485 synonymous SNV . 0 13 hm5C_associated_SNPs_34740 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 80bp
chr7 142458485 142458485 1 + C T SKCM 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG CTACCAGGTGTCTCTGAATTCTGGCTACCACTTCTGTGGTG < 41bp 1 0.775722877241643 1 0.76811158657074 experiment 0.448554245516714 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458485 synonymous SNV . 0 13 hm5C_associated_SNPs_34740 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 6bp
chr7 142458485 142458485 1 + C T SKCM 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG CTACCAGGTGTCTCTGAATTCTGGCTACCACTTCTGTGGTG < 41bp 1 0.775722877241643 1 0.76811158657074 experiment 0.448554245516714 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458485 synonymous SNV . 0 13 hm5C_associated_SNPs_34740 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 81bp
chr7 142458485 142458485 1 + C T SKCM 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCTCTGAATTCTGGCTACCACTTCTGTGGTGGCTC < 41bp 1 0.0711596443239412 1 0.0391932427883148 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458485 synonymous SNV . 0 9 hm5C_associated_SNPs_34741 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 80bp
chr7 142458485 142458485 1 + C T SKCM 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCTCTGAATTCTGGCTACCACTTCTGTGGTGGCTC < 41bp 1 0.0711596443239412 1 0.0391932427883148 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458485 synonymous SNV . 0 9 hm5C_associated_SNPs_34741 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 6bp
chr7 142458485 142458485 1 + C T SKCM 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCTCTGAATTCTGGCTACCACTTCTGTGGTGGCTC < 41bp 1 0.0711596443239412 1 0.0391932427883148 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458485 synonymous SNV . 0 9 hm5C_associated_SNPs_34741 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 81bp
chr7 142458485 142458485 1 + C T SKCM 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCTCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT < 41bp 1 0.0704446902094073 1 0.0642716884613037 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458485 synonymous SNV . 0 6 hm5C_associated_SNPs_34742 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 80bp
chr7 142458485 142458485 1 + C T SKCM 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCTCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT < 41bp 1 0.0704446902094073 1 0.0642716884613037 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458485 synonymous SNV . 0 6 hm5C_associated_SNPs_34742 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 6bp
chr7 142458485 142458485 1 + C T SKCM 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCTCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT < 41bp 1 0.0704446902094073 1 0.0642716884613037 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458485 synonymous SNV . 0 6 hm5C_associated_SNPs_34742 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 81bp
chr7 142458485 142458485 1 + C T SKCM 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCTCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC < 41bp 1 0.194889893374393 1 0.402598828077316 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458485 synonymous SNV . 0 5 hm5C_associated_SNPs_34743 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 80bp
chr7 142458485 142458485 1 + C T SKCM 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCTCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC < 41bp 1 0.194889893374393 1 0.402598828077316 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458485 synonymous SNV . 0 5 hm5C_associated_SNPs_34743 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 6bp
chr7 142458485 142458485 1 + C T SKCM 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCTCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC < 41bp 1 0.194889893374393 1 0.402598828077316 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458485 synonymous SNV . 0 5 hm5C_associated_SNPs_34743 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 81bp
chr7 142458485 142458485 1 + C T SKCM 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCTCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT < 41bp 1 0.368801159172254 1 0.495380401611328 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458485 synonymous SNV . 0 3 hm5C_associated_SNPs_34744 0 0 0 0 3 PRSS1 chr7:142458406 3'AG 142458406 Downstream 80bp
chr7 142458485 142458485 1 + C T SKCM 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCTCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT < 41bp 1 0.368801159172254 1 0.495380401611328 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458485 synonymous SNV . 0 3 hm5C_associated_SNPs_34744 0 0 0 0 3 PRSS1 chr7:142458480 3'AG 142458480 Downstream 6bp
chr7 142458485 142458485 1 + C T SKCM 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCTCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT < 41bp 1 0.368801159172254 1 0.495380401611328 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458485 synonymous SNV . 0 3 hm5C_associated_SNPs_34744 0 0 0 0 3 PRSS1 chr7:142458565 5'GT 142458565 Upstream 81bp
chr7 142459649 142459649 1 + G A SKCM 142459631 + 142459611 142459651 41 GCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGAGCA GCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGAACA < 41bp 1 0.553589541239568 1 0.772555351257324 experiment 0.892820917520864 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459631 chr7:142459649 synonymous SNV . 0 39 hm5C_associated_SNPs_34745 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 25bp
chr7 142459649 142459649 1 + G A SKCM 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTGAGACTGGGAGAACACAACATCGAAGTCCTGGAGGGGAA < 41bp 1 0.693398274644218 1 0.185111582279205 experiment 0.613203450711564 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459649 synonymous SNV . 0 15 hm5C_associated_SNPs_34746 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 25bp
chr7 142459649 142459649 1 + G A SKCM 142459658 + 142459638 142459678 41 AGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAATGA AGACTGGGAGAACACAACATCGAAGTCCTGGAGGGGAATGA < 41bp 1 0.723862384943267 1 0.470293641090393 experiment 0.552275230113467 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459658 chr7:142459649 synonymous SNV . 0 12 hm5C_associated_SNPs_34747 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 25bp
chr7 142459649 142459649 1 + G A SKCM 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAACACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT < 41bp 1 0.52866973428278 1 0.415048897266388 experiment 0.94266053143444 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459649 synonymous SNV . 0 6 hm5C_associated_SNPs_34748 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 25bp
chr22 22040815 22040815 1 + C T SKCM 22040825 + 22040805 22040845 41 TTCACCTCCACCGCGATGGTCCCGGAGACCACACATGAAGC TTCACCTCCATCGCGATGGTCCCGGAGACCACACATGAAGC < 41bp 1 0.312941159881881 1 0.389163821935654 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040825 chr22:22040815 nonsynonymous SNV 0.220 4 11 hm5C_associated_SNPs_34749 0 0 1 0 2 PPIL2 chr22:22040772 3'AG 22040772 Downstream 44bp
chr22 22040815 22040815 1 + C T SKCM 22040825 + 22040805 22040845 41 TTCACCTCCACCGCGATGGTCCCGGAGACCACACATGAAGC TTCACCTCCATCGCGATGGTCCCGGAGACCACACATGAAGC < 41bp 1 0.312941159881881 1 0.389163821935654 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040825 chr22:22040815 nonsynonymous SNV 0.220 4 11 hm5C_associated_SNPs_34749 0 0 1 0 2 PPIL2 chr22:22040847 5'GT 22040847 Upstream 33bp
chr10 105048212 105048212 1 + C T SKCM 105048230 + 105048210 105048250 41 ACCTAGAATCCTCAGTGCTACAACCTCCAAAGTCTCATCCA ACTTAGAATCCTCAGTGCTACAACCTCCAAAGTCTCATCCA < 41bp 1 0.342140400982384 1 0.151751279830933 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control INA ENSG00000148798 CDS Human protein_coding chr10:105048230 chr10:105048212 nonsynonymous SNV 0.782 2 3 hm5C_associated_SNPs_34753 0 0 0 0 1 INA chr10:105048117 3'AG 105048117 Downstream 96bp
chr16 72142723 72142723 1 + C T SKCM 72142736 + 72142716 72142756 41 GAACATCCGCACAGGGATGCCCTGCCACTTGCACCCCACCA GAACATCTGCACAGGGATGCCCTGCCACTTGCACCCCACCA < 41bp 1 0.116974895516092 1 0.174912869930267 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72142736 chr16:72142723 nonsynonymous SNV 0.962 4 8 hm5C_associated_SNPs_34754 0 0 0 0 1 DHX38 chr16:72142699 3'AG 72142699 Downstream 25bp
chr17 60768369 60768369 1 + G A SKCM 60768363 + 60768343 60768383 41 TGAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGC TGAACTACTCCAACTGGGGGCCCCCGAGCTTGGGCCCCAGC < 41bp 1 0.0300099783776934 1 0.0892072021961212 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768363 chr17:60768369 nonsynonymous SNV 0.710 2 27 hm5C_associated_SNPs_34755 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 60bp
chr17 60768369 60768369 1 + G A SKCM 60768364 + 60768344 60768384 41 GAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGCA GAACTACTCCAACTGGGGGCCCCCGAGCTTGGGCCCCAGCA < 41bp 1 0.0907806278258592 1 0.447910696268082 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768364 chr17:60768369 nonsynonymous SNV 0.710 2 26 hm5C_associated_SNPs_34756 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 60bp
chr17 60768369 60768369 1 + G A SKCM 60768365 + 60768345 60768385 41 AACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGCAT AACTACTCCAACTGGGGGCCCCCGAGCTTGGGCCCCAGCAT < 41bp 1 0.362931082720499 1 0.681836485862732 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768365 chr17:60768369 nonsynonymous SNV 0.710 2 25 hm5C_associated_SNPs_34757 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 60bp
chr17 60768369 60768369 1 + G A SKCM 60768377 + 60768357 60768397 41 TGGGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAA TGGGGGCCCCCGAGCTTGGGCCCCAGCATGCTGAGCCACAA < 41bp 1 0.323000308832228 1 0.127879410982132 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768377 chr17:60768369 nonsynonymous SNV 0.710 2 13 hm5C_associated_SNPs_34758 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 60bp
chr17 60768369 60768369 1 + G A SKCM 60768378 + 60768358 60768398 41 GGGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAAC GGGGGCCCCCGAGCTTGGGCCCCAGCATGCTGAGCCACAAC < 41bp 1 0.0949505886970541 1 0.225799798965454 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768378 chr17:60768369 nonsynonymous SNV 0.710 2 12 hm5C_associated_SNPs_34759 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 60bp
chr17 60768369 60768369 1 + G A SKCM 60768379 + 60768359 60768399 41 GGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACA GGGGCCCCCGAGCTTGGGCCCCAGCATGCTGAGCCACAACA < 41bp 1 0.0734559107925894 1 0.243198812007904 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768379 chr17:60768369 nonsynonymous SNV 0.710 2 11 hm5C_associated_SNPs_34760 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 60bp
chr17 60768369 60768369 1 + G A SKCM 60768380 + 60768360 60768400 41 GGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACAG GGGCCCCCGAGCTTGGGCCCCAGCATGCTGAGCCACAACAG < 41bp 1 0.578622424381466 1 0.461019158363342 experiment 0.842755151237067 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768380 chr17:60768369 nonsynonymous SNV 0.710 2 10 hm5C_associated_SNPs_34761 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 60bp
chr8 61757427 61757427 1 + G A SKCM 61757430 + 61757410 61757450 41 ATTTGCTTTGCAGTTGGGGACGGTGGACAGACATTCTTTCC ATTTGCTTTGCAGTTGGAGACGGTGGACAGACATTCTTTCC < 41bp 1 0.258037527934663 1 0.785477638244629 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHD7 ENSG00000171316 CDS Human protein_coding chr8:61757430 chr8:61757427 nonsynonymous SNV 0.992 4 18 hm5C_associated_SNPs_34762 0 0 1 0 1 CHD7 chr8:61757423 3'AG 61757423 Downstream 5bp
chr8 61757428 61757428 1 + G A SKCM 61757430 + 61757410 61757450 41 ATTTGCTTTGCAGTTGGGGACGGTGGACAGACATTCTTTCC ATTTGCTTTGCAGTTGGGAACGGTGGACAGACATTCTTTCC < 41bp 1 0.219752587329356 1 0.52889484167099 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHD7 ENSG00000171316 CDS Human protein_coding chr8:61757430 chr8:61757428 nonsynonymous SNV 0.991 4 19 hm5C_associated_SNPs_34763 0 0 1 0 1 CHD7 chr8:61757423 3'AG 61757423 Downstream 6bp
chr10 76468125 76468125 1 + C T SKCM 76468126 + 76468106 76468146 41 AGCCTCTGACTGAATGTATCCGTGCTGGCCACTATGCAGCA AGCCTCTGACTGAATGTATTCGTGCTGGCCACTATGCAGCA < 41bp 1 0.462971443612438 1 0.780782341957092 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ADK ENSG00000156110 CDS Human protein_coding chr10:76468126 chr10:76468125 synonymous SNV . 0 20 hm5C_associated_SNPs_34765 0 0 1 0 1 ADK chr10:76468079 3'AG 76468079 Downstream 47bp
chr12 112130549 112130549 1 + C T SKCM 112130547 + 112130527 112130567 41 GCTGTTTCCAGTCCCCCCGTCTCCAGTGGGTGTGGAGAACA GCTGTTTCCAGTCCCCCCGTCTTCAGTGGGTGTGGAGAACA < 41bp 1 0.48271410944514 1 0.73139625787735 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ACAD10 ENSG00000111271 CDS Human protein_coding chr12:112130547 chr12:112130549 synonymous SNV . 0 23 hm5C_associated_SNPs_34766 0 0 1 0 1 ACAD10 chr12:112130501 3'AG 112130501 Downstream 49bp
chrX 70357586 70357586 1 + C T SKCM 70357578 + 70357558 70357598 41 TCTCCTTCTTCCCTCCAGGGCTATACTCCTTATGTTTCTCA TCTCCTTCTTCCCTCCAGGGCTATACTCTTTATGTTTCTCA < 41bp 1 0.0950973270215684 1 0.0875484049320221 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70357578 chrX:70357586 nonsynonymous SNV 0.998 1 29 hm5C_associated_SNPs_34767 0 0 1 0 2 MED12 chrX:70357576 3'AG 70357576 Downstream 11bp
chrX 70357586 70357586 1 + C T SKCM 70357578 + 70357558 70357598 41 TCTCCTTCTTCCCTCCAGGGCTATACTCCTTATGTTTCTCA TCTCCTTCTTCCCTCCAGGGCTATACTCTTTATGTTTCTCA < 41bp 1 0.0950973270215684 1 0.0875484049320221 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70357578 chrX:70357586 nonsynonymous SNV 0.998 1 29 hm5C_associated_SNPs_34767 0 0 1 0 2 MED12 chrX:70357630 5'GT 70357630 Upstream 45bp
chr2 99999343 99999343 1 + C T SKCM 99999336 + 99999316 99999356 41 CCCCAGACAATTGAGTCTATCAACCTTCTCAAATCTAAAAA CCCCAGACAATTGAGTCTATCAACCTTTTCAAATCTAAAAA < 41bp 1 0.392142249367465 1 0.354019433259964 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:99999336 chr2:99999343 nonsynonymous SNV 0.991 3 28 hm5C_associated_SNPs_34768 0 0 1 0 1 EIF5B chr2:99999384 5'GT 99999384 Upstream 42bp
chr2 128178923 128178923 1 + C T SKCM 128178922 + 128178902 128178942 41 GATCCGCAAACGTGCCAACTCCTTCCTGGAGGAGCTCCGTC GATCCGCAAACGTGCCAACTCTTTCCTGGAGGAGCTCCGTC < 41bp 1 0.152596575151326 1 0.0550442934036255 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128178922 chr2:128178923 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_34769 0 0 1 0 2 PROC chr2:128178859 3'AG 128178859 Downstream 65bp
chr2 128178923 128178923 1 + C T SKCM 128178922 + 128178902 128178942 41 GATCCGCAAACGTGCCAACTCCTTCCTGGAGGAGCTCCGTC GATCCGCAAACGTGCCAACTCTTTCCTGGAGGAGCTCCGTC < 41bp 1 0.152596575151326 1 0.0550442934036255 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128178922 chr2:128178923 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_34769 0 0 1 0 2 PROC chr2:128178894 3'AG 128178894 Downstream 30bp
chr16 24826599 24826599 1 + G A SKCM 24826598 + 24826578 24826618 41 CCACGTGCCAAATCGCCTAACGGCTCTAGCAGTGTTAATTG CCACGTGCCAAATCGCCTAACAGCTCTAGCAGTGTTAATTG < 41bp 1 0.375821102326917 1 0.0647346675395966 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24826598 chr16:24826599 nonsynonymous SNV 0.987 3 22 hm5C_associated_SNPs_34770 0 0 1 0 1 TNRC6A chr16:24826626 5'GT 24826626 Upstream 28bp
chr16 24826600 24826600 1 + G A SKCM 24826598 + 24826578 24826618 41 CCACGTGCCAAATCGCCTAACGGCTCTAGCAGTGTTAATTG CCACGTGCCAAATCGCCTAACGACTCTAGCAGTGTTAATTG < 41bp 1 0.298289880258733 1 0.0376015901565552 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24826598 chr16:24826600 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_34776 0 0 1 0 1 TNRC6A chr16:24826626 5'GT 24826626 Upstream 27bp
chrX 153628212 153628212 1 + A T SKCM 153628229 + 153628209 153628249 41 CATATCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCAT CATTTCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCAT < 41bp 1 0.352011339202007 1 0.0415612757205963 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628229 chrX:153628212 nonsynonymous SNV 0.998 3 4 hm5C_associated_SNPs_34778 0 0 1 0 1 RPL10 chrX:153628282 5'GT 153628282 Upstream 71bp
chr1 223943208 223943208 1 + C T SKCM 223943200 + 223943180 223943220 41 AGACACATTCTGGATGAACCCTCAGTACCTGATCAAGCTGG AGACACATTCTGGATGAACCCTCAGTACTTGATCAAGCTGG < 41bp 1 0.653918070857085 1 0.367838799953461 experiment 0.692163858285831 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943200 chr1:223943208 synonymous SNV . 0 29 hm5C_associated_SNPs_34779 0 0 1 0 1 CAPN2 chr1:223943182 3'AG 223943182 Downstream 27bp
chr1 223943208 223943208 1 + C T SKCM 223943207 + 223943187 223943227 41 TTCTGGATGAACCCTCAGTACCTGATCAAGCTGGAGGAGGA TTCTGGATGAACCCTCAGTACTTGATCAAGCTGGAGGAGGA < 41bp 1 0.671885437563073 1 0.204691469669342 experiment 0.656229124873854 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943207 chr1:223943208 synonymous SNV . 0 22 hm5C_associated_SNPs_34780 0 0 1 0 1 CAPN2 chr1:223943182 3'AG 223943182 Downstream 27bp
chrX 153628213 153628213 1 + T C SKCM 153628229 + 153628209 153628249 41 CATATCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCAT CATACCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCAT < 41bp 1 0.347244782905972 1 0.0330245792865753 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628229 chrX:153628213 nonsynonymous SNV 0.998 1 5 hm5C_associated_SNPs_34781 0 0 1 0 1 RPL10 chrX:153628282 5'GT 153628282 Upstream 70bp
chr7 6631409 6631409 1 + A T SKCM 6631401 + 6631381 6631421 41 CAGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCT CAGCCCTCAAGGGAACAAAGCCGATGACTGCCGGATGAGCT < 41bp 1 0.14377979894489 1 0.278095632791519 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631401 chr7:6631409 nonsynonymous SNV 0.999 2 29 hm5C_associated_SNPs_34782 0 0 1 0 2 C7orf26 chr7:6631334 3'AG 6631334 Downstream 76bp
chr7 6631409 6631409 1 + A T SKCM 6631401 + 6631381 6631421 41 CAGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCT CAGCCCTCAAGGGAACAAAGCCGATGACTGCCGGATGAGCT < 41bp 1 0.14377979894489 1 0.278095632791519 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631401 chr7:6631409 nonsynonymous SNV 0.999 2 29 hm5C_associated_SNPs_34782 0 0 1 0 2 C7orf26 chr7:6631498 5'GT 6631498 Upstream 90bp
chr7 6631409 6631409 1 + A T SKCM 6631402 + 6631382 6631422 41 AGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCTT AGCCCTCAAGGGAACAAAGCCGATGACTGCCGGATGAGCTT < 41bp 1 0.425456823992094 1 0.476600766181946 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631402 chr7:6631409 nonsynonymous SNV 0.999 2 28 hm5C_associated_SNPs_34783 0 0 1 0 2 C7orf26 chr7:6631334 3'AG 6631334 Downstream 76bp
chr7 6631409 6631409 1 + A T SKCM 6631402 + 6631382 6631422 41 AGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCTT AGCCCTCAAGGGAACAAAGCCGATGACTGCCGGATGAGCTT < 41bp 1 0.425456823992094 1 0.476600766181946 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631402 chr7:6631409 nonsynonymous SNV 0.999 2 28 hm5C_associated_SNPs_34783 0 0 1 0 2 C7orf26 chr7:6631498 5'GT 6631498 Upstream 90bp
chr7 36466575 36466575 1 + C T SKCM 36466562 + 36466542 36466582 41 GGTCTTAGTGCTGTGCGAACCAGCAACTTCGCCCTTGTTGG GGTCTTAGTGCTGTGCGAACCAGCAACTTCGCCTTTGTTGG < 41bp 1 0.793210241114661 1 0.847251892089844 experiment 0.413579517770678 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36466562 chr7:36466575 nonsynonymous SNV 0.919 4 34 hm5C_associated_SNPs_34784 0 0 1 0 2 ANLN chr7:36466525 3'AG 36466525 Downstream 51bp
chr7 36466575 36466575 1 + C T SKCM 36466562 + 36466542 36466582 41 GGTCTTAGTGCTGTGCGAACCAGCAACTTCGCCCTTGTTGG GGTCTTAGTGCTGTGCGAACCAGCAACTTCGCCTTTGTTGG < 41bp 1 0.793210241114661 1 0.847251892089844 experiment 0.413579517770678 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36466562 chr7:36466575 nonsynonymous SNV 0.919 4 34 hm5C_associated_SNPs_34784 0 0 1 0 2 ANLN chr7:36466637 5'GT 36466637 Upstream 63bp
chr7 135328088 135328088 1 + C T SKCM 135328068 + 135328048 135328088 41 GACAGAGTGTCAGCAAGCTACAAAATGTAGAGCAGCTTCCC GACAGAGTGTCAGCAAGCTACAAAATGTAGAGCAGCTTCCT < 41bp 1 0.408863788503207 1 0.180196106433868 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135328068 chr7:135328088 synonymous SNV . 0 41 hm5C_associated_SNPs_34786 0 0 1 0 1 NUP205 chr7:135328106 5'GT 135328106 Upstream 19bp
chr13 76382250 76382250 1 + C T SKCM 76382234 + 76382214 76382254 41 GGAACTACCGTGCCTCCCATCAGTTTCACCCCTGGCCCCTG GGAACTACCGTGCCTCCCATCAGTTTCACCCCTGGCTCCTG < 41bp 1 0.227123357340215 1 0.714375019073486 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76382234 chr13:76382250 nonsynonymous SNV 0.995 1 37 hm5C_associated_SNPs_34787 0 0 1 0 1 LMO7 chr13:76382335 5'GT 76382335 Upstream 86bp
chr5 150867572 150867572 1 + G A SKCM 150867554 + 150867534 150867574 41 CTCCCTGCAGGCATCTTGGCCATCCTCATCCCCCGCCTGGA CTCCCTGCAGGCATCTTGGCCATCCTCATCCCCCGCCTAGA < 41bp 1 0.0816219343898954 1 0.017558753490448 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150867554 chr5:150867572 synonymous SNV . 0 39 hm5C_associated_SNPs_34789 0 0 0 0 1 SLC36A1 chr5:150867544 3'AG 150867544 Downstream 29bp
chr9 18721637 18721637 1 + C T SKCM 18721629 + 18721609 18721649 41 GCCGCCGGCCCCCACAGCTCCTGAAGTCCTGCAATTTGGAT GCCGCCGGCCCCCACAGCTCCTGAAGTCTTGCAATTTGGAT < 41bp 1 0.400916424659498 1 0.269129693508148 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18721629 chr9:18721637 synonymous SNV . 0 29 hm5C_associated_SNPs_34790 0 0 0 0 1 ADAMTSL1 chr9:18721663 5'GT 18721663 Upstream 27bp
chr5 139893013 139893013 1 + A T SKCM 139893005 + 139892985 139893025 41 TTGTGAAGGCTAAAGACCAGCAAGCTGCAGAAGCAAATAAG TTGTGAAGGCTAAAGACCAGCAAGCTGCTGAAGCAAATAAG < 41bp 1 0.161588358505172 1 0.288991421461105 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139893005 chr5:139893013 synonymous SNV . 0 29 hm5C_associated_SNPs_34792 0 0 1 0 2 ANKHD1;ANKHD1-EIF4EBP3 chr5:139892948 3'AG 139892948 Downstream 66bp
chr5 139893013 139893013 1 + A T SKCM 139893005 + 139892985 139893025 41 TTGTGAAGGCTAAAGACCAGCAAGCTGCAGAAGCAAATAAG TTGTGAAGGCTAAAGACCAGCAAGCTGCTGAAGCAAATAAG < 41bp 1 0.161588358505172 1 0.288991421461105 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139893005 chr5:139893013 synonymous SNV . 0 29 hm5C_associated_SNPs_34792 0 0 1 0 2 ANKHD1;ANKHD1-EIF4EBP3 chr5:139893064 5'GT 139893064 Upstream 52bp
chr1 22333383 22333383 1 + C T SKCM 22333371 + 22333351 22333391 41 GACTGTTCCCTCCTCCCCAGCAATGACATCGCCCTCATCAA GACTGTTCCCTCCTCCCCAGCAATGACATCGCTCTCATCAA < 41bp 1 0.237173482436407 1 0.0481081604957581 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333371 chr1:22333383 synonymous SNV . 0 33 hm5C_associated_SNPs_34794 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 13bp
chr1 22333383 22333383 1 + C T SKCM 22333377 + 22333357 22333397 41 TCCCTCCTCCCCAGCAATGACATCGCCCTCATCAAGCTCTC TCCCTCCTCCCCAGCAATGACATCGCTCTCATCAAGCTCTC < 41bp 1 0.404137262250647 1 0.101272165775299 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333377 chr1:22333383 synonymous SNV . 0 27 hm5C_associated_SNPs_34795 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 13bp
chr1 22333383 22333383 1 + C T SKCM 22333380 + 22333360 22333400 41 CTCCTCCCCAGCAATGACATCGCCCTCATCAAGCTCTCACG CTCCTCCCCAGCAATGACATCGCTCTCATCAAGCTCTCACG < 41bp 1 0.154210974883778 1 0.187789350748062 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333380 chr1:22333383 synonymous SNV . 0 24 hm5C_associated_SNPs_34796 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 13bp
chr1 22333383 22333383 1 + C T SKCM 22333382 + 22333362 22333402 41 CCTCCCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCA CCTCCCCAGCAATGACATCGCTCTCATCAAGCTCTCACGCA < 41bp 1 0.292306081638955 1 0.0354299545288086 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333382 chr1:22333383 synonymous SNV . 0 22 hm5C_associated_SNPs_34797 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 13bp
chr1 22333383 22333383 1 + C T SKCM 22333384 + 22333364 22333404 41 TCCCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCAGC TCCCCAGCAATGACATCGCTCTCATCAAGCTCTCACGCAGC < 41bp 1 0.289871870539192 1 0.0387196838855743 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333384 chr1:22333383 synonymous SNV . 0 20 hm5C_associated_SNPs_34798 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 13bp
chr1 22333383 22333383 1 + C T SKCM 22333386 + 22333366 22333406 41 CCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCAGCGC CCCAGCAATGACATCGCTCTCATCAAGCTCTCACGCAGCGC < 41bp 1 0.633827143852694 1 0.371434330940247 experiment 0.732345712294611 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333386 chr1:22333383 synonymous SNV . 0 18 hm5C_associated_SNPs_34799 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 13bp
chr1 22333383 22333383 1 + C T SKCM 22333389 + 22333369 22333409 41 AGCAATGACATCGCCCTCATCAAGCTCTCACGCAGCGCCCA AGCAATGACATCGCTCTCATCAAGCTCTCACGCAGCGCCCA < 41bp 1 0.589094252908227 1 0.858426511287689 experiment 0.821811494183546 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333389 chr1:22333383 synonymous SNV . 0 15 hm5C_associated_SNPs_34800 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 13bp
chr1 22333383 22333383 1 + C T SKCM 22333393 + 22333373 22333413 41 ATGACATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTG ATGACATCGCTCTCATCAAGCTCTCACGCAGCGCCCAGCTG < 41bp 1 0.2317621065054 1 0.0304391086101532 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333393 chr1:22333383 synonymous SNV . 0 11 hm5C_associated_SNPs_34801 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 13bp
chr1 22333383 22333383 1 + C T SKCM 22333395 + 22333375 22333415 41 GACATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGG GACATCGCTCTCATCAAGCTCTCACGCAGCGCCCAGCTGGG < 41bp 1 0.252940154829852 1 0.176715344190598 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333395 chr1:22333383 synonymous SNV . 0 9 hm5C_associated_SNPs_34802 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 13bp
chr1 22333383 22333383 1 + C T SKCM 22333397 + 22333377 22333417 41 CATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAG CATCGCTCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAG < 41bp 1 0.562095871673356 1 0.257010400295258 experiment 0.875808256653288 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333397 chr1:22333383 synonymous SNV . 0 7 hm5C_associated_SNPs_34803 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 13bp
chr1 22333383 22333383 1 + C T SKCM 22333399 + 22333379 22333419 41 TCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGAT TCGCTCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGAT < 41bp 1 0.573988860652597 1 0.174940884113312 experiment 0.852022278694805 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333399 chr1:22333383 synonymous SNV . 0 5 hm5C_associated_SNPs_34804 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 13bp
chr1 22333383 22333383 1 + C T SKCM 22333401 + 22333381 22333421 41 GCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGC GCTCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGC < 41bp 1 0.764568025119483 1 0.161200523376465 experiment 0.470863949761034 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333401 chr1:22333383 synonymous SNV . 0 3 hm5C_associated_SNPs_34805 0 0 0 0 1 CELA3A chr1:22333371 3'AG 22333371 Downstream 13bp
chr22 29622514 29622514 1 + G A SKCM 29622517 + 29622497 29622537 41 AAGTGTCAGAGCTGACAGAGCGGCTGAAGGTGCTGGAGGCC AAGTGTCAGAGCTGACAAAGCGGCTGAAGGTGCTGGAGGCC < 41bp 1 0.554394335556629 1 0.732047915458679 experiment 0.891211328886742 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EMID1 ENSG00000186998 CDS Human protein_coding chr22:29622517 chr22:29622514 nonsynonymous SNV 0.902 0 18 hm5C_associated_SNPs_34806 0 0 1 0 2 EMID1 chr22:29622479 3'AG 29622479 Downstream 36bp
chr22 29622514 29622514 1 + G A SKCM 29622517 + 29622497 29622537 41 AAGTGTCAGAGCTGACAGAGCGGCTGAAGGTGCTGGAGGCC AAGTGTCAGAGCTGACAAAGCGGCTGAAGGTGCTGGAGGCC < 41bp 1 0.554394335556629 1 0.732047915458679 experiment 0.891211328886742 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EMID1 ENSG00000186998 CDS Human protein_coding chr22:29622517 chr22:29622514 nonsynonymous SNV 0.902 0 18 hm5C_associated_SNPs_34806 0 0 1 0 2 EMID1 chr22:29622540 5'GT 29622540 Upstream 27bp
chr2 99156085 99156085 1 + C T SKCM 99156084 + 99156064 99156104 41 GATGGCAGAGAGCGTGCTCTCCCTGCACGTGCCCCGGCAGT GATGGCAGAGAGCGTGCTCTCTCTGCACGTGCCCCGGCAGT < 41bp 1 0.618477624274711 1 0.802982211112976 experiment 0.763044751450578 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99156084 chr2:99156085 synonymous SNV . 0 22 hm5C_associated_SNPs_34807 0 0 1 0 1 INPP4A chr2:99156138 5'GT 99156138 Upstream 54bp
chr10 118314748 118314748 1 + C T SKCM 118314736 + 118314716 118314756 41 CAGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGC CAGGGCACACCTGAATTAGTCCGATTGGACCCTAGCGATGC < 41bp 1 0.376754933153757 1 0.239794462919235 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314736 chr10:118314748 synonymous SNV . 0 33 hm5C_associated_SNPs_34808 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 62bp
chr10 118314748 118314748 1 + C T SKCM 118314737 + 118314717 118314757 41 AGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGCC AGGGCACACCTGAATTAGTCCGATTGGACCCTAGCGATGCC < 41bp 1 0.268572418047461 1 0.169456720352173 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314737 chr10:118314748 synonymous SNV . 0 32 hm5C_associated_SNPs_34809 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 62bp
chr10 118314748 118314748 1 + C T SKCM 118314745 + 118314725 118314765 41 CCTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGT CCTGAATTAGTCCGATTGGACCCTAGCGATGCCAAATTTGT < 41bp 1 0.305086489889315 1 0.0360769629478455 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314745 chr10:118314748 synonymous SNV . 0 24 hm5C_associated_SNPs_34810 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 62bp
chr10 118314748 118314748 1 + C T SKCM 118314746 + 118314726 118314766 41 CTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTG CTGAATTAGTCCGATTGGACCCTAGCGATGCCAAATTTGTG < 41bp 1 0.0545059742310904 1 0.117569386959076 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314746 chr10:118314748 synonymous SNV . 0 23 hm5C_associated_SNPs_34811 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 62bp
chr10 118314748 118314748 1 + C T SKCM 118314747 + 118314727 118314767 41 TGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGG TGAATTAGTCCGATTGGACCCTAGCGATGCCAAATTTGTGG < 41bp 1 0.540745523485114 1 0.0988709926605225 experiment 0.918508953029772 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314747 chr10:118314748 synonymous SNV . 0 22 hm5C_associated_SNPs_34812 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 62bp
chr10 118314748 118314748 1 + C T SKCM 118314751 + 118314731 118314771 41 TTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGATGT TTAGTCCGATTGGACCCTAGCGATGCCAAATTTGTGGATGT < 41bp 1 0.405370181670955 1 0.279937863349915 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314751 chr10:118314748 synonymous SNV . 0 18 hm5C_associated_SNPs_34813 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 62bp
chr10 118314748 118314748 1 + C T SKCM 118314756 + 118314736 118314776 41 CCGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTC CCGATTGGACCCTAGCGATGCCAAATTTGTGGATGTAATTC < 41bp 1 0.337193305176083 1 0.056604415178299 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314756 chr10:118314748 synonymous SNV . 0 13 hm5C_associated_SNPs_34814 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 62bp
chr10 118314748 118314748 1 + C T SKCM 118314757 + 118314737 118314777 41 CGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTCA CGATTGGACCCTAGCGATGCCAAATTTGTGGATGTAATTCA < 41bp 1 0.357812427904366 1 0.266541600227356 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314757 chr10:118314748 synonymous SNV . 0 12 hm5C_associated_SNPs_34815 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 62bp
chr17 1637434 1637434 1 + C T SKCM 1637447 + 1637427 1637467 41 GCGTCTTCTTCGTGGGCCAGCTTGAGGCCCCGCAGCACGTG GCGTCTTTTTCGTGGGCCAGCTTGAGGCCCCGCAGCACGTG < 41bp 1 0.594825503750439 1 0.374053031206131 experiment 0.810348992499123 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1637447 chr17:1637434 synonymous SNV . 0 8 hm5C_associated_SNPs_34816 0 0 0 0 1 WDR81 chr17:1637510 5'GT 1637510 Upstream 77bp
chr21 37785199 37785199 1 + T G SKCM 37785214 + 37785194 37785234 41 TGCCTTCCTGGCCATTTCTTCCACGGACGGTTACTGCTCAT TGCCTGCCTGGCCATTTCTTCCACGGACGGTTACTGCTCAT < 41bp 1 0.372295582716416 1 0.247886419296265 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37785214 chr21:37785199 nonsynonymous SNV 0.988 4 6 hm5C_associated_SNPs_34817 0 0 1 0 1 CHAF1B chr21:37785182 3'AG 37785182 Downstream 18bp
chr3 150264610 150264610 1 + C T SKCM 150264597 + 150264577 150264617 41 TTTCCGGGACAACATGGCGCCGTCCACGCCGCTCTTGACAG TTTCCGGGACAACATGGCGCCGTCCACGCCGCTTTTGACAG < 41bp 1 0.19489291985375 1 0.118578523397446 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF2A ENSG00000144895 CDS Human protein_coding chr3:150264597 chr3:150264610 nonsynonymous SNV . 0 34 hm5C_associated_SNPs_34818 0 0 1 0 1 EIF2A chr3:150264617 5'GT 150264617 Upstream 8bp
chr11 73078666 73078666 1 + C T SKCM 73078683 + 73078663 73078703 41 CTCCCCTTGGCACCGAGGCCCCGCCCCTGCCAGGCCTAAAA CTCTCCTTGGCACCGAGGCCCCGCCCCTGCCAGGCCTAAAA < 41bp 1 0.0383623946447263 1 0.138228833675385 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73078683 chr11:73078666 synonymous SNV . 0 4 hm5C_associated_SNPs_34819 0 0 0 0 1 ARHGEF17 chr11:73078629 3'AG 73078629 Downstream 38bp
chr8 145697783 145697783 1 + G A SKCM 145697780 + 145697760 145697800 41 GGGCCTCCCGAGCGCCTGGCCGTGAGGCAGGGCCCAGAAGG GGGCCTCCCGAGCGCCTGGCCGTAAGGCAGGGCCCAGAAGG < 41bp 1 0.488357998274231 1 0.389114856719971 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145697780 chr8:145697783 synonymous SNV . 0 24 hm5C_associated_SNPs_34823 0 0 1 0 2 KIFC2 chr8:145697744 3'AG 145697744 Downstream 40bp
chr8 145697783 145697783 1 + G A SKCM 145697780 + 145697760 145697800 41 GGGCCTCCCGAGCGCCTGGCCGTGAGGCAGGGCCCAGAAGG GGGCCTCCCGAGCGCCTGGCCGTAAGGCAGGGCCCAGAAGG < 41bp 1 0.488357998274231 1 0.389114856719971 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145697780 chr8:145697783 synonymous SNV . 0 24 hm5C_associated_SNPs_34823 0 0 1 0 2 KIFC2 chr8:145697867 5'GT 145697867 Upstream 85bp
chrX 153038448 153038448 1 + C T SKCM 153038439 + 153038419 153038459 41 CTCCAGACAGGTGGCAACACCAGTGCCTTCGTGGGTGGCCA CTCCAGACAGGTGGCAACACCAGTGCCTTTGTGGGTGGCCA < 41bp 1 0.288927420998584 1 0.486200600862503 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153038439 chrX:153038448 synonymous SNV . 0 30 hm5C_associated_SNPs_34824 0 0 0 0 1 PLXNB3 chrX:153038471 5'GT 153038471 Upstream 24bp
chr11 63706495 63706495 1 + G A SKCM 63706484 + 63706464 63706504 41 TTGCAGGGCCGTCCGCTCTGCTGCCGCCGCTGTTGCAGCCA TTGCAGGGCCGTCCGCTCTGCTGCCGCCGCTATTGCAGCCA < 41bp 1 0.510773763827399 1 0.449630916118622 experiment 0.978452472345202 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAA40 ENSG00000110583 UTR5 Human protein_coding chr11:63706484 chr11:63706495 . . 0 32 hm5C_associated_SNPs_34825 0 0 1 0 1 NAA40 chr11:63706574 5'GT 63706574 Upstream 80bp
chrX 47065744 47065744 1 + C T SKCM 47065738 + 47065718 47065758 41 GGCAATGTGCAGGTGGTGATCCCCTTCCTGACAGAGTCGTA GGCAATGTGCAGGTGGTGATCCCCTTTCTGACAGAGTCGTA < 41bp 1 0.365479976179978 1 0.0545131862163544 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control UBA1 ENSG00000130985 CDS Human protein_coding chrX:47065738 chrX:47065744 synonymous SNV . 0 27 hm5C_associated_SNPs_34826 0 0 1 0 2 UBA1 chrX:47065647 3'AG 47065647 Downstream 98bp
chrX 47065744 47065744 1 + C T SKCM 47065738 + 47065718 47065758 41 GGCAATGTGCAGGTGGTGATCCCCTTCCTGACAGAGTCGTA GGCAATGTGCAGGTGGTGATCCCCTTTCTGACAGAGTCGTA < 41bp 1 0.365479976179978 1 0.0545131862163544 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control UBA1 ENSG00000130985 CDS Human protein_coding chrX:47065738 chrX:47065744 synonymous SNV . 0 27 hm5C_associated_SNPs_34826 0 0 1 0 2 UBA1 chrX:47065843 5'GT 47065843 Upstream 100bp
chr1 41289904 41289904 1 + C T SKCM 41289886 + 41289866 41289906 41 TCCCGTTACCCGCCCGTTGCCACCTGCCACCGGCCGGGCAG TCCCGTTACCCGCCCGTTGCCACCTGCCACCGGCCGGGTAG < 41bp 1 0.700172720540449 1 0.141353487968445 experiment 0.599654558919102 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41289886 chr1:41289904 synonymous SNV . 0 39 hm5C_associated_SNPs_34827 0 0 0 0 1 KCNQ4 chr1:41289930 5'GT 41289930 Upstream 27bp
chr7 142459664 142459664 1 + C T SKCM 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTGAGACTGGGAGAGCACAACATCGAAGTTCTGGAGGGGAA < 41bp 1 0.645519965045693 1 0.148171156644821 experiment 0.708960069908614 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459664 synonymous SNV . 0 30 hm5C_associated_SNPs_34828 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 40bp
chr7 142459664 142459664 1 + C T SKCM 142459658 + 142459638 142459678 41 AGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAATGA AGACTGGGAGAGCACAACATCGAAGTTCTGGAGGGGAATGA < 41bp 1 0.793862850088651 1 0.448254704475403 experiment 0.412274299822698 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459658 chr7:142459664 synonymous SNV . 0 27 hm5C_associated_SNPs_34829 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 40bp
chr7 142459664 142459664 1 + C T SKCM 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG AAGTTCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG < 41bp 1 0.510208745604068 1 0.357251524925232 experiment 0.979582508791864 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459664 synonymous SNV . 0 5 hm5C_associated_SNPs_34830 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 40bp
chr19 1434818 1434818 1 + C T SKCM 1434815 + 1434795 1434835 41 CCTCCTTCCTACGGGGGTCCCTCCGTGCCAGGGTCGGGGGG CCTCCTTCCTACGGGGGTCCCTCTGTGCCAGGGTCGGGGGG < 41bp 1 0.76789539448077 1 0.551924169063568 experiment 0.46420921103846 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434815 chr19:1434818 synonymous SNV . 0 24 hm5C_associated_SNPs_34831 0 0 1 0 1 DAZAP1 chr19:1434736 3'AG 1434736 Downstream 83bp
chr19 1434818 1434818 1 + C T SKCM 1434836 + 1434816 1434856 41 TCCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGG TCTGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGG < 41bp 1 0.349289704880862 1 0.186862111091614 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434836 chr19:1434818 synonymous SNV . 0 3 hm5C_associated_SNPs_34832 0 0 1 0 1 DAZAP1 chr19:1434736 3'AG 1434736 Downstream 83bp
chr19 1434818 1434818 1 + C T SKCM 1434837 + 1434817 1434857 41 CCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGC CTGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGC < 41bp 1 0.371093649761533 1 0.147155970335007 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434837 chr19:1434818 synonymous SNV . 0 2 hm5C_associated_SNPs_34833 0 0 1 0 1 DAZAP1 chr19:1434736 3'AG 1434736 Downstream 83bp
chr19 1434818 1434818 1 + C T SKCM 1434838 + 1434818 1434858 41 CGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCT TGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCT < 41bp 1 0.511401314245762 1 0.462335526943207 experiment 0.977197371508476 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434838 chr19:1434818 synonymous SNV . 0 1 hm5C_associated_SNPs_34834 0 0 1 0 1 DAZAP1 chr19:1434736 3'AG 1434736 Downstream 83bp
chr12 132400481 132400481 1 + G A SKCM 132400500 + 132400480 132400520 41 TGCCGCCTGCACAGCGCCCCCAACCTGTCTGACTTGCACGT TACCGCCTGCACAGCGCCCCCAACCTGTCTGACTTGCACGT < 41bp 1 0.197189526213167 1 0.0763790607452393 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ULK1 ENSG00000177169 CDS Human protein_coding chr12:132400500 chr12:132400481 nonsynonymous SNV 0.940 0 2 hm5C_associated_SNPs_34836 0 0 1 0 1 ULK1 chr12:132400436 3'AG 132400436 Downstream 46bp
chr19 42398370 42398370 1 + C T SKCM 42398364 + 42398344 42398384 41 GACAAGAAGTCGGGGAGGAACTTCTTCCGGAAAAAGGTGCT GACAAGAAGTCGGGGAGGAACTTCTTTCGGAAAAAGGTGCT < 41bp 1 0.178998149186766 1 0.519497632980347 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42398364 chr19:42398370 synonymous SNV . 0 27 hm5C_associated_SNPs_34837 0 0 0 0 2 ARHGEF1 chr19:42398280 3'AG 42398280 Downstream 91bp
chr19 42398370 42398370 1 + C T SKCM 42398364 + 42398344 42398384 41 GACAAGAAGTCGGGGAGGAACTTCTTCCGGAAAAAGGTGCT GACAAGAAGTCGGGGAGGAACTTCTTTCGGAAAAAGGTGCT < 41bp 1 0.178998149186766 1 0.519497632980347 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42398364 chr19:42398370 synonymous SNV . 0 27 hm5C_associated_SNPs_34837 0 0 0 0 2 ARHGEF1 chr19:42398379 5'GT 42398379 Upstream 10bp
chr1 155028639 155028639 1 + C T SKCM 155028630 + 155028610 155028650 41 CAGCGTGACCTGGTGGAGATCAGCCCAAACCCAGCTGTCAC CAGCGTGACCTGGTGGAGATCAGCCCAAATCCAGCTGTCAC < 41bp 1 0.552728572014931 1 0.410055309534073 experiment 0.894542855970138 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155028630 chr1:155028639 synonymous SNV . 0 30 hm5C_associated_SNPs_34838 0 0 1 1 1 ADAM15 chr1:155028556 3'AG 155028556 Downstream 84bp
chr5 139917070 139917070 1 + G A SKCM 139917055 + 139917035 139917075 41 GATACCTCCCCCAATTGGAACAGAGAGACTGGCCCGAATTC GATACCTCCCCCAATTGGAACAGAGAGACTGGCCCAAATTC < 41bp 1 0.280689256979652 1 0.535064041614532 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139917055 chr5:139917070 nonsynonymous SNV 0.996 4 36 hm5C_associated_SNPs_34840 0 0 1 0 1 ANKHD1;ANKHD1-EIF4EBP3 chr5:139916974 3'AG 139916974 Downstream 97bp
chr20 42695394 42695394 1 + C T SKCM 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCTCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA < 41bp 1 0.441042217970223 1 0.0971888303756714 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695394 nonsynonymous SNV 0.931 0 4 hm5C_associated_SNPs_34848 0 0 0 0 1 TOX2 chr20:42695370 3'AG 42695370 Downstream 25bp
chr17 53014064 53014064 1 + C T SKCM 53014053 + 53014033 53014073 41 TTTTGGAGCAAAATAAGAACCAGAAGGAAGCCACCAATGTA TTTTGGAGCAAAATAAGAACCAGAAGGAAGCTACCAATGTA < 41bp 1 0.706076193126643 1 0.590216875076294 experiment 0.587847613746713 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014053 chr17:53014064 synonymous SNV . 0 32 hm5C_associated_SNPs_34849 0 0 1 0 2 TOM1L1 chr17:53014010 3'AG 53014010 Downstream 55bp
chr17 53014064 53014064 1 + C T SKCM 53014053 + 53014033 53014073 41 TTTTGGAGCAAAATAAGAACCAGAAGGAAGCCACCAATGTA TTTTGGAGCAAAATAAGAACCAGAAGGAAGCTACCAATGTA < 41bp 1 0.706076193126643 1 0.590216875076294 experiment 0.587847613746713 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014053 chr17:53014064 synonymous SNV . 0 32 hm5C_associated_SNPs_34849 0 0 1 0 2 TOM1L1 chr17:53014070 5'GT 53014070 Upstream 7bp
chr14 64909104 64909104 1 + A T SKCM 64909115 + 64909095 64909135 41 TCAAGATGCACGGGGGCGGCCCCACGGTGAGTGGTGGGTTG TCAAGATGCTCGGGGGCGGCCCCACGGTGAGTGGTGGGTTG < 41bp 1 0.268590538067573 1 0.419808030128479 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64909115 chr14:64909104 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_34850 0 0 1 0 1 MTHFD1 chr14:64909120 5'GT 64909120 Upstream 17bp
chr14 64909105 64909105 1 + C T SKCM 64909115 + 64909095 64909135 41 TCAAGATGCACGGGGGCGGCCCCACGGTGAGTGGTGGGTTG TCAAGATGCATGGGGGCGGCCCCACGGTGAGTGGTGGGTTG < 41bp 1 0.246997027692094 1 0.301707625389099 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64909115 chr14:64909105 synonymous SNV . 0 11 hm5C_associated_SNPs_34851 0 0 1 0 1 MTHFD1 chr14:64909120 5'GT 64909120 Upstream 16bp
chr11 61630767 61630767 1 + C T SKCM 61630766 + 61630746 61630786 41 TCTTGCAGGTTCCTGGAGAGCCACTGGTTTGTGTGGGTCAC TCTTGCAGGTTCCTGGAGAGCTACTGGTTTGTGTGGGTCAC < 41bp 1 0.454461494597985 1 0.25663024187088 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61630766 chr11:61630767 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_34852 0 0 1 0 2 FADS2 chr11:61630754 3'AG 61630754 Downstream 14bp
chr11 61630767 61630767 1 + C T SKCM 61630766 + 61630746 61630786 41 TCTTGCAGGTTCCTGGAGAGCCACTGGTTTGTGTGGGTCAC TCTTGCAGGTTCCTGGAGAGCTACTGGTTTGTGTGGGTCAC < 41bp 1 0.454461494597985 1 0.25663024187088 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61630766 chr11:61630767 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_34852 0 0 1 0 2 FADS2 chr11:61630850 5'GT 61630850 Upstream 84bp
chr19 30502112 30502112 1 + C T SKCM 30502098 + 30502078 30502118 41 CAGCACTGGCAGTGGCCACTCTGCCCAGGAGCTGCCGACCA CAGCACTGGCAGTGGCCACTCTGCCCAGGAGCTGTCGACCA < 41bp 1 0.79949883026978 1 0.239427745342255 experiment 0.40100233946044 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control URI1 ENSG00000105176 CDS Human protein_coding chr19:30502098 chr19:30502112 nonsynonymous SNV 0.412 3 35 hm5C_associated_SNPs_34853 0 0 1 0 1 URI1 chr19:30502143 5'GT 30502143 Upstream 32bp
chr7 44796724 44796724 1 + C T SKCM 44796719 + 44796699 44796739 41 GGCGTGTACAGCCGCGGGGGCTACCCTGGGGCCCCCGGCTT GGCGTGTACAGCCGCGGGGGCTACCTTGGGGCCCCCGGCTT < 41bp 1 0.357685457515628 1 0.119005918502808 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44796719 chr7:44796724 nonsynonymous SNV 0.942 4 26 hm5C_associated_SNPs_34854 0 0 1 0 2 ZMIZ2 chr7:44796642 3'AG 44796642 Downstream 83bp
chr7 44796724 44796724 1 + C T SKCM 44796719 + 44796699 44796739 41 GGCGTGTACAGCCGCGGGGGCTACCCTGGGGCCCCCGGCTT GGCGTGTACAGCCGCGGGGGCTACCTTGGGGCCCCCGGCTT < 41bp 1 0.357685457515628 1 0.119005918502808 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44796719 chr7:44796724 nonsynonymous SNV 0.942 4 26 hm5C_associated_SNPs_34854 0 0 1 0 2 ZMIZ2 chr7:44796748 5'GT 44796748 Upstream 25bp
chr6 33169579 33169579 1 + C T SKCM 33169566 + 33169546 33169586 41 TCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCCCCGTGGA TCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCTCCGTGGA < 41bp 1 0.143371124441266 1 0.0619710981845856 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33169566 chr6:33169579 nonsynonymous SNV 0.997 4 34 hm5C_associated_SNPs_34855 0 0 1 0 2 SLC39A7 chr6:33169522 3'AG 33169522 Downstream 58bp
chr6 33169579 33169579 1 + C T SKCM 33169566 + 33169546 33169586 41 TCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCCCCGTGGA TCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCTCCGTGGA < 41bp 1 0.143371124441266 1 0.0619710981845856 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33169566 chr6:33169579 nonsynonymous SNV 0.997 4 34 hm5C_associated_SNPs_34855 0 0 1 0 2 SLC39A7 chr6:33169538 3'AG 33169538 Downstream 42bp
chr8 17055097 17055097 1 + G A SKCM 17055095 + 17055075 17055115 41 AGCTTTTTGTCCCTAGCCATCCGATACTGTGACAGATGCCA AGCTTTTTGTCCCTAGCCATCCAATACTGTGACAGATGCCA < 41bp 1 0.0984202865952563 1 0.12864950299263 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZDHHC2 ENSG00000104219 CDS Human protein_coding chr8:17055095 chr8:17055097 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_34856 0 0 1 0 2 ZDHHC2 chr8:17055091 3'AG 17055091 Downstream 7bp
chr8 17055097 17055097 1 + G A SKCM 17055095 + 17055075 17055115 41 AGCTTTTTGTCCCTAGCCATCCGATACTGTGACAGATGCCA AGCTTTTTGTCCCTAGCCATCCAATACTGTGACAGATGCCA < 41bp 1 0.0984202865952563 1 0.12864950299263 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZDHHC2 ENSG00000104219 CDS Human protein_coding chr8:17055095 chr8:17055097 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_34856 0 0 1 0 2 ZDHHC2 chr8:17055160 5'GT 17055160 Upstream 64bp
chr1 32626295 32626295 1 + C T SKCM 32626288 + 32626268 32626308 41 ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA ACGTCTTGAACTGTTCCATCCTTAATCTTTTGTTAACGTGA < 41bp 1 0.147922571173178 1 0.474185347557068 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32626288 chr1:32626295 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_34857 0 0 1 0 3 KPNA6 chr1:32626216 3'AG 32626216 Downstream 80bp
chr1 32626295 32626295 1 + C T SKCM 32626288 + 32626268 32626308 41 ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA ACGTCTTGAACTGTTCCATCCTTAATCTTTTGTTAACGTGA < 41bp 1 0.147922571173178 1 0.474185347557068 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32626288 chr1:32626295 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_34857 0 0 1 0 3 KPNA6 chr1:32626220 3'AG 32626220 Downstream 76bp
chr1 32626295 32626295 1 + C T SKCM 32626288 + 32626268 32626308 41 ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA ACGTCTTGAACTGTTCCATCCTTAATCTTTTGTTAACGTGA < 41bp 1 0.147922571173178 1 0.474185347557068 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32626288 chr1:32626295 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_34857 0 0 1 0 3 KPNA6 chr1:32626304 5'GT 32626304 Upstream 10bp
chr16 83992977 83992977 1 + C T SKCM 83992986 + 83992966 83993006 41 CTCACCGAGGCCCCGGGGGTCTCCATCCTGGACCAGGTGGG CTCACCGAGGCTCCGGGGGTCTCCATCCTGGACCAGGTGGG < 41bp 1 0.583269899646513 1 0.847439348697662 experiment 0.833460200706974 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83992986 chr16:83992977 synonymous SNV . 0 12 hm5C_associated_SNPs_34858 0 0 0 0 1 OSGIN1 chr16:83993001 5'GT 83993001 Upstream 25bp
chr8 56864641 56864641 1 + C T SKCM 56864624 + 56864604 56864644 41 TAATGGGGGCTATTACATCTCTCCACGAATCACTTTTCCCT TAATGGGGGCTATTACATCTCTCCACGAATCACTTTTTCCT < 41bp 1 0.708466233545871 1 0.898177146911621 experiment 0.583067532908258 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56864624 chr8:56864641 nonsynonymous SNV 0.998 0 38 hm5C_associated_SNPs_34859 0 0 1 0 1 LYN chr8:56864674 5'GT 56864674 Upstream 34bp
chr22 45923826 45923826 1 + C T SKCM 45923825 + 45923805 45923845 41 TACCAGTGTGGACAGGTCTTCCAGGCATGCTGTGTCAAGAG TACCAGTGTGGACAGGTCTTCTAGGCATGCTGTGTCAAGAG < 41bp 1 0.703937090180859 1 0.537134289741516 experiment 0.592125819638282 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45923825 chr22:45923826 stopgain 0.880 1 22 hm5C_associated_SNPs_34860 0 0 1 0 2 FBLN1 chr22:45923727 3'AG 45923727 Downstream 100bp
chr22 45923826 45923826 1 + C T SKCM 45923825 + 45923805 45923845 41 TACCAGTGTGGACAGGTCTTCCAGGCATGCTGTGTCAAGAG TACCAGTGTGGACAGGTCTTCTAGGCATGCTGTGTCAAGAG < 41bp 1 0.703937090180859 1 0.537134289741516 experiment 0.592125819638282 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45923825 chr22:45923826 stopgain 0.880 1 22 hm5C_associated_SNPs_34860 0 0 1 0 2 FBLN1 chr22:45923889 5'GT 45923889 Upstream 64bp
chr8 38899581 38899581 1 + C T SKCM 38899577 + 38899557 38899597 41 CTGATGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTG CTGATGAAGCCTATAGTGCTCCCTTCTGTGGTAATAAGTTG < 41bp 1 0.126521041335209 1 0.0460838973522186 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38899577 chr8:38899581 nonsynonymous SNV 0.992 0 25 hm5C_associated_SNPs_34861 0 0 1 0 1 ADAM9 chr8:38899636 5'GT 38899636 Upstream 56bp
chr11 71502807 71502807 1 + T G SKCM 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGGGAAGCACCCGCCGTCAGTCAAGTAT < 41bp 1 0.21290056775616 1 0.439842760562897 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502807 nonsynonymous SNV 0.957 0 16 hm5C_associated_SNPs_34868 0 0 0 1 3 FAM86C1 chr11:71502782 3'AG 71502782 Downstream 26bp
chr11 71502807 71502807 1 + T G SKCM 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGGGAAGCACCCGCCGTCAGTCAAGTAT < 41bp 1 0.21290056775616 1 0.439842760562897 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502807 nonsynonymous SNV 0.957 0 16 hm5C_associated_SNPs_34868 0 0 0 1 3 FAM86C1 chr11:71502785 3'AG 71502785 Downstream 23bp
chr11 71502807 71502807 1 + T G SKCM 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGGGAAGCACCCGCCGTCAGTCAAGTAT < 41bp 1 0.21290056775616 1 0.439842760562897 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502807 nonsynonymous SNV 0.957 0 16 hm5C_associated_SNPs_34868 0 0 0 1 3 FAM86C1 chr11:71502865 5'GT 71502865 Upstream 59bp
chr19 39215191 39215191 1 + C T SKCM 39215182 + 39215162 39215202 41 GCCAGGCCAATGTTGTGGGGCCCTGGATCCAGACCAAGATG GCCAGGCCAATGTTGTGGGGCCCTGGATCTAGACCAAGATG < 41bp 1 0.0908451953576322 1 0.0329121947288513 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215182 chr19:39215191 stopgain 1.000 1 30 hm5C_associated_SNPs_34869 0 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 15bp
chr19 39215191 39215191 1 + C T SKCM 39215184 + 39215164 39215204 41 CAGGCCAATGTTGTGGGGCCCTGGATCCAGACCAAGATGGA CAGGCCAATGTTGTGGGGCCCTGGATCTAGACCAAGATGGA < 41bp 1 0.697657418125216 1 0.610700011253357 experiment 0.604685163749568 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215184 chr19:39215191 stopgain 1.000 1 28 hm5C_associated_SNPs_34870 0 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 15bp
chr19 39215191 39215191 1 + C T SKCM 39215195 + 39215175 39215215 41 TGTGGGGCCCTGGATCCAGACCAAGATGGAGGTGAGGCACG TGTGGGGCCCTGGATCTAGACCAAGATGGAGGTGAGGCACG < 41bp 1 0.335699555554688 1 0.312009483575821 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215195 chr19:39215191 stopgain 1.000 1 17 hm5C_associated_SNPs_34871 0 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 15bp
chr12 57167947 57167947 1 + G A SKCM 57167934 + 57167914 57167954 41 CTACTCAGTGGGTGAAGGAGCATGTGGGGGACAGAGGTATG CTACTCAGTGGGTGAAGGAGCATGTGGGGGACAAAGGTATG < 41bp 1 0.477499761627212 1 0.354485869407654 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSD17B6 ENSG00000025423 CDS Human protein_coding chr12:57167934 chr12:57167947 nonsynonymous SNV 0.993 1 34 hm5C_associated_SNPs_34872 0 0 1 0 1 HSD17B6 chr12:57167949 5'GT 57167949 Upstream 3bp
chr5 176016583 176016583 1 + G A SKCM 176016578 + 176016558 176016598 41 GCGGCTGCAGTTCTCCACACCGAAGGAGGAGGTGGGCGCCA GCGGCTGCAGTTCTCCACACCGAAGAAGGAGGTGGGCGCCA < 41bp 1 0.472512813578464 1 0.772830963134766 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176016578 chr5:176016583 nonsynonymous SNV 0.111 0 26 hm5C_associated_SNPs_34873 0 0 0 0 2 CDHR2 chr5:176016529 3'AG 176016529 Downstream 55bp
chr5 176016583 176016583 1 + G A SKCM 176016578 + 176016558 176016598 41 GCGGCTGCAGTTCTCCACACCGAAGGAGGAGGTGGGCGCCA GCGGCTGCAGTTCTCCACACCGAAGAAGGAGGTGGGCGCCA < 41bp 1 0.472512813578464 1 0.772830963134766 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176016578 chr5:176016583 nonsynonymous SNV 0.111 0 26 hm5C_associated_SNPs_34873 0 0 0 0 2 CDHR2 chr5:176016617 5'GT 176016617 Upstream 35bp
chr1 16778415 16778415 1 + C T SKCM 16778416 + 16778396 16778436 41 CTGAGCCTGCTTCCCCCTCCCCCAGGGGGGAAAACCTCCAC CTGAGCCTGCTTCCCCCTCTCCCAGGGGGGAAAACCTCCAC < 41bp 1 0.758270689216892 1 0.877727627754211 experiment 0.483458621566216 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778416 chr1:16778415 nonsynonymous SNV 0.894 4 20 hm5C_associated_SNPs_34875 0 0 0 0 2 NECAP2 chr1:16778333 3'AG 16778333 Downstream 83bp
chr1 16778415 16778415 1 + C T SKCM 16778416 + 16778396 16778436 41 CTGAGCCTGCTTCCCCCTCCCCCAGGGGGGAAAACCTCCAC CTGAGCCTGCTTCCCCCTCTCCCAGGGGGGAAAACCTCCAC < 41bp 1 0.758270689216892 1 0.877727627754211 experiment 0.483458621566216 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778416 chr1:16778415 nonsynonymous SNV 0.894 4 20 hm5C_associated_SNPs_34875 0 0 0 0 2 NECAP2 chr1:16778510 5'GT 16778510 Upstream 96bp
chr1 16778415 16778415 1 + C T SKCM 16778417 + 16778397 16778437 41 TGAGCCTGCTTCCCCCTCCCCCAGGGGGGAAAACCTCCACC TGAGCCTGCTTCCCCCTCTCCCAGGGGGGAAAACCTCCACC < 41bp 1 0.709825805256847 1 0.744602799415588 experiment 0.580348389486305 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778417 chr1:16778415 nonsynonymous SNV 0.894 4 19 hm5C_associated_SNPs_34876 0 0 0 0 2 NECAP2 chr1:16778333 3'AG 16778333 Downstream 83bp
chr1 16778415 16778415 1 + C T SKCM 16778417 + 16778397 16778437 41 TGAGCCTGCTTCCCCCTCCCCCAGGGGGGAAAACCTCCACC TGAGCCTGCTTCCCCCTCTCCCAGGGGGGAAAACCTCCACC < 41bp 1 0.709825805256847 1 0.744602799415588 experiment 0.580348389486305 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778417 chr1:16778415 nonsynonymous SNV 0.894 4 19 hm5C_associated_SNPs_34876 0 0 0 0 2 NECAP2 chr1:16778510 5'GT 16778510 Upstream 96bp
chr7 128486888 128486888 1 + C T SKCM 128486898 + 128486878 128486918 41 GGTAGCTGCACCGTGGAGTACATCCCCTTCACTCCTGGAGA GGTAGCTGCATCGTGGAGTACATCCCCTTCACTCCTGGAGA < 41bp 1 0.0438780748770244 1 0.0641769766807556 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486898 chr7:128486888 nonsynonymous SNV 0.984 3 11 hm5C_associated_SNPs_34879 0 0 0 0 2 FLNC chr7:128486799 3'AG 128486799 Downstream 90bp
chr7 128486888 128486888 1 + C T SKCM 128486898 + 128486878 128486918 41 GGTAGCTGCACCGTGGAGTACATCCCCTTCACTCCTGGAGA GGTAGCTGCATCGTGGAGTACATCCCCTTCACTCCTGGAGA < 41bp 1 0.0438780748770244 1 0.0641769766807556 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486898 chr7:128486888 nonsynonymous SNV 0.984 3 11 hm5C_associated_SNPs_34879 0 0 0 0 2 FLNC chr7:128486959 5'GT 128486959 Upstream 72bp
chr17 75210098 75210098 1 + C T SKCM 75210096 + 75210076 75210116 41 TCCCACTCCAGCTCCATGATCTCCAGGTAGTGCCGCGCTGC TCCCACTCCAGCTCCATGATCTTCAGGTAGTGCCGCGCTGC < 41bp 1 0.697782417635746 1 0.217097759246826 experiment 0.604435164728507 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC14L1 ENSG00000129657 CDS Human protein_coding chr17:75210096 chr17:75210098 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_34880 0 0 1 0 2 SEC14L1 chr17:75210000 3'AG 75210000 Downstream 99bp
chr17 75210098 75210098 1 + C T SKCM 75210096 + 75210076 75210116 41 TCCCACTCCAGCTCCATGATCTCCAGGTAGTGCCGCGCTGC TCCCACTCCAGCTCCATGATCTTCAGGTAGTGCCGCGCTGC < 41bp 1 0.697782417635746 1 0.217097759246826 experiment 0.604435164728507 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC14L1 ENSG00000129657 CDS Human protein_coding chr17:75210096 chr17:75210098 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_34880 0 0 1 0 2 SEC14L1 chr17:75210101 5'GT 75210101 Upstream 4bp
chr9 137708893 137708893 1 + G A SKCM 137708906 + 137708886 137708926 41 TACTGGTGAACCAGGTCCATCGGGGCCTCCAGGAAAAAGGG TACTGGTAAACCAGGTCCATCGGGGCCTCCAGGAAAAAGGG < 41bp 1 0.307088999355057 1 0.831288874149323 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137708906 chr9:137708893 nonsynonymous SNV 0.561 3 8 hm5C_associated_SNPs_34881 0 0 0 0 1 COL5A1 chr9:137708872 3'AG 137708872 Downstream 22bp
chr13 113485772 113485772 1 + C T SKCM 113485767 + 113485747 113485787 41 AGGAGTGCTGCATCGAAGGCCATGTCTACGTGCCCCACGTC AGGAGTGCTGCATCGAAGGCCATGTTTACGTGCCCCACGTC < 41bp 1 0.1907119702578 1 0.405615925788879 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP11A ENSG00000068650 CDS Human protein_coding chr13:113485767 chr13:113485772 synonymous SNV . 0 26 hm5C_associated_SNPs_34882 0 0 0 0 1 ATP11A chr13:113485689 3'AG 113485689 Downstream 84bp
chr2 136396198 136396198 1 + C T SKCM 136396190 + 136396170 136396210 41 ATCTATTCTTTTTTCTAGTCCCTGTGTTCCCAAGAGAATTA ATCTATTCTTTTTTCTAGTCCCTGTGTTTCCAAGAGAATTA < 41bp 1 0.0249041855861097 1 0.0485671162605286 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control R3HDM1 ENSG00000048991 CDS Human protein_coding chr2:136396190 chr2:136396198 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_34884 0 0 1 0 2 R3HDM1 chr2:136396188 3'AG 136396188 Downstream 11bp
chr2 136396198 136396198 1 + C T SKCM 136396190 + 136396170 136396210 41 ATCTATTCTTTTTTCTAGTCCCTGTGTTCCCAAGAGAATTA ATCTATTCTTTTTTCTAGTCCCTGTGTTTCCAAGAGAATTA < 41bp 1 0.0249041855861097 1 0.0485671162605286 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control R3HDM1 ENSG00000048991 CDS Human protein_coding chr2:136396190 chr2:136396198 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_34884 0 0 1 0 2 R3HDM1 chr2:136396225 5'GT 136396225 Upstream 28bp
chr1 12317070 12317070 1 + C T SKCM 12317053 + 12317033 12317073 41 CTAATACAAAGCTGCAATACCGGCAAATCATGGAATTCCTC CTAATACAAAGCTGCAATACCGGCAAATCATGGAATTTCTC < 41bp 1 0.224164620003394 1 0.440597683191299 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VPS13D ENSG00000048707 CDS Human protein_coding chr1:12317053 chr1:12317070 synonymous SNV . 0 38 hm5C_associated_SNPs_34885 0 0 1 0 2 VPS13D chr1:12317044 3'AG 12317044 Downstream 27bp
chr1 12317070 12317070 1 + C T SKCM 12317053 + 12317033 12317073 41 CTAATACAAAGCTGCAATACCGGCAAATCATGGAATTCCTC CTAATACAAAGCTGCAATACCGGCAAATCATGGAATTTCTC < 41bp 1 0.224164620003394 1 0.440597683191299 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VPS13D ENSG00000048707 CDS Human protein_coding chr1:12317053 chr1:12317070 synonymous SNV . 0 38 hm5C_associated_SNPs_34885 0 0 1 0 2 VPS13D chr1:12317144 5'GT 12317144 Upstream 75bp
chr2 182766562 182766562 1 + C T SKCM 182766571 + 182766551 182766591 41 TTCTCAAGTCTCCGGGACGCCCCTGCAGAGAATTGGAAGTA TTCTCAAGTCTTCGGGACGCCCCTGCAGAGAATTGGAAGTA < 41bp 1 0.212480206720777 1 0.0540726482868195 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182766571 chr2:182766562 nonsynonymous SNV 0.995 4 12 hm5C_associated_SNPs_34886 0 0 1 0 1 SSFA2 chr2:182766493 3'AG 182766493 Downstream 70bp
chr1 17949637 17949637 1 + C T SKCM 17949656 + 17949636 17949676 41 CCACCGAGAAGATCGGGGACCTCTTCGTGGCCTCGGTAAGT CTACCGAGAAGATCGGGGACCTCTTCGTGGCCTCGGTAAGT < 41bp 1 0.117692075361068 1 0.0309090614318848 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF10L ENSG00000074964 CDS Human protein_coding chr1:17949656 chr1:17949637 synonymous SNV . 0 2 hm5C_associated_SNPs_34890 0 0 1 0 1 ARHGEF10L chr1:17949670 5'GT 17949670 Upstream 34bp
chr19 6177320 6177320 1 + C T SKCM 6177336 + 6177316 6177356 41 CACTCAGCCATATTGCAGCACAGATGATGGACATCTGGGTA CACTTAGCCATATTGCAGCACAGATGATGGACATCTGGGTA < 41bp 1 0.395660755166329 1 0.0933663249015808 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ACSBG2 ENSG00000130377 CDS Human protein_coding chr19:6177336 chr19:6177320 synonymous SNV . 0 5 hm5C_associated_SNPs_34891 0 0 0 0 2 ACSBG2 chr19:6177240 3'AG 6177240 Downstream 81bp
chr19 6177320 6177320 1 + C T SKCM 6177336 + 6177316 6177356 41 CACTCAGCCATATTGCAGCACAGATGATGGACATCTGGGTA CACTTAGCCATATTGCAGCACAGATGATGGACATCTGGGTA < 41bp 1 0.395660755166329 1 0.0933663249015808 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ACSBG2 ENSG00000130377 CDS Human protein_coding chr19:6177336 chr19:6177320 synonymous SNV . 0 5 hm5C_associated_SNPs_34891 0 0 0 0 2 ACSBG2 chr19:6177407 5'GT 6177407 Upstream 88bp
chr22 51044074 51044074 1 + C T SKCM 51044075 + 51044055 51044095 41 AGGAGGACGACTTCTGGTTCCGTGGCTTCAACATGCGCACG AGGAGGACGACTTCTGGTTTCGTGGCTTCAACATGCGCACG < 41bp 1 0.460588419576244 1 0.611353099346161 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAPK8IP2 ENSG00000008735 CDS Human protein_coding chr22:51044075 chr22:51044074 synonymous SNV . 0 20 hm5C_associated_SNPs_34892 0 0 0 0 2 MAPK8IP2 chr22:51043990 3'AG 51043990 Downstream 85bp
chr22 51044074 51044074 1 + C T SKCM 51044075 + 51044055 51044095 41 AGGAGGACGACTTCTGGTTCCGTGGCTTCAACATGCGCACG AGGAGGACGACTTCTGGTTTCGTGGCTTCAACATGCGCACG < 41bp 1 0.460588419576244 1 0.611353099346161 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAPK8IP2 ENSG00000008735 CDS Human protein_coding chr22:51044075 chr22:51044074 synonymous SNV . 0 20 hm5C_associated_SNPs_34892 0 0 0 0 2 MAPK8IP2 chr22:51044162 5'GT 51044162 Upstream 89bp
chr11 130005579 130005579 1 + C T SKCM 130005561 + 130005541 130005581 41 TCTGAGGAGAGTGAGGAGATCCCACCGTTCCACCCCTTCCA TCTGAGGAGAGTGAGGAGATCCCACCGTTCCACCCCTTTCA < 41bp 1 0.251470553286877 1 0.103022843599319 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130005561 chr11:130005579 synonymous SNV . 0 39 hm5C_associated_SNPs_34893 0 0 1 0 1 APLP2 chr11:130005610 5'GT 130005610 Upstream 32bp
chr11 118403846 118403846 1 + C T SKCM 118403838 + 118403818 118403858 41 TCACCAACCACACGGTGCAGCTGCAGCTCCGCAGCCTGGCA TCACCAACCACACGGTGCAGCTGCAGCTTCGCAGCCTGGCA < 41bp 1 0.695209955200932 1 0.723609566688538 experiment 0.609580089598135 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118403838 chr11:118403846 synonymous SNV . 0 29 hm5C_associated_SNPs_34894 0 0 0 0 1 TMEM25 chr11:118403922 5'GT 118403922 Upstream 77bp
chr3 111685471 111685471 1 + C T SKCM 111685463 + 111685443 111685483 41 TTTGGTGTTTCATTCAGTGCCAGCACTTCAAATATTGCTAG TTTGGTGTTTCATTCAGTGCCAGCACTTTAAATATTGCTAG < 41bp 1 0.484173698588799 1 0.271250069141388 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111685463 chr3:111685471 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_34897 0 0 0 0 1 PHLDB2 chr3:111685460 3'AG 111685460 Downstream 12bp
chr5 149006709 149006709 1 + A T SKCM 149006692 + 149006672 149006712 41 GCTCTCCTGAGCAGGTATGGCCCTGGGAAGCTGTACCAGGT GCTCTCCTGAGCAGGTATGGCCCTGGGAAGCTGTACCTGGT < 41bp 1 0.206187575336069 1 0.434415400028229 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:149006692 chr5:149006709 nonsynonymous SNV 0.996 4 38 hm5C_associated_SNPs_34898 0 0 0 0 1 ARHGEF37 chr5:149006639 3'AG 149006639 Downstream 71bp
chr7 44741211 44741211 1 + C T SKCM 44741191 + 44741171 44741211 41 GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTT < 41bp 1 0.177675950536711 1 0.59520560503006 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44741191 chr7:44741211 nonsynonymous SNV 0.945 0 41 hm5C_associated_SNPs_34901 0 0 1 0 2 OGDH chr7:44741142 3'AG 44741142 Downstream 70bp
chr7 44741211 44741211 1 + C T SKCM 44741191 + 44741171 44741211 41 GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTT < 41bp 1 0.177675950536711 1 0.59520560503006 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44741191 chr7:44741211 nonsynonymous SNV 0.945 0 41 hm5C_associated_SNPs_34901 0 0 1 0 2 OGDH chr7:44741214 5'GT 44741214 Upstream 4bp
chr4 76711331 76711331 1 + G A SKCM 76711339 + 76711319 76711359 41 CAGAAGTTATTCGAGGCTGCCAAGTAAACCAAGACTACTTT CAGAAGTTATTCAAGGCTGCCAAGTAAACCAAGACTACTTT < 41bp 1 0.355909928700145 1 0.285944908857346 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control USO1 ENSG00000138768 CDS Human protein_coding chr4:76711339 chr4:76711331 nonsynonymous SNV 0.997 3 13 hm5C_associated_SNPs_34902 0 0 1 0 2 USO1 chr4:76711303 3'AG 76711303 Downstream 29bp
chr4 76711331 76711331 1 + G A SKCM 76711339 + 76711319 76711359 41 CAGAAGTTATTCGAGGCTGCCAAGTAAACCAAGACTACTTT CAGAAGTTATTCAAGGCTGCCAAGTAAACCAAGACTACTTT < 41bp 1 0.355909928700145 1 0.285944908857346 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control USO1 ENSG00000138768 CDS Human protein_coding chr4:76711339 chr4:76711331 nonsynonymous SNV 0.997 3 13 hm5C_associated_SNPs_34902 0 0 1 0 2 USO1 chr4:76711391 5'GT 76711391 Upstream 61bp
chr2 42886981 42886981 1 + A G SKCM 42886977 + 42886957 42886997 41 TAGTTTGCATATGAGTGCTGCTGCAGCTTCCCGAGACATCA TAGTTTGCATATGAGTGCTGCTGCGGCTTCCCGAGACATCA < 41bp 1 0.196402211917399 1 0.204963505268097 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTA3 ENSG00000057935 CDS Human protein_coding chr2:42886977 chr2:42886981 synonymous SNV . 0 25 hm5C_associated_SNPs_34903 0 0 1 0 2 MTA3 chr2:42886903 3'AG 42886903 Downstream 79bp
chr2 42886981 42886981 1 + A G SKCM 42886977 + 42886957 42886997 41 TAGTTTGCATATGAGTGCTGCTGCAGCTTCCCGAGACATCA TAGTTTGCATATGAGTGCTGCTGCGGCTTCCCGAGACATCA < 41bp 1 0.196402211917399 1 0.204963505268097 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTA3 ENSG00000057935 CDS Human protein_coding chr2:42886977 chr2:42886981 synonymous SNV . 0 25 hm5C_associated_SNPs_34903 0 0 1 0 2 MTA3 chr2:42887002 5'GT 42887002 Upstream 22bp
chr8 133855033 133855033 1 + T C SKCM 133855017 + 133854997 133855037 41 TCTCGCAGACCCTGGGAGCTCAGATGATGATGATGTTAGTA TCTCGCAGACCCTGGGAGCTCAGATGATGATGATGTCAGTA < 41bp 1 0.585764083923084 1 0.553044378757477 experiment 0.828471832153832 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133855017 chr8:133855033 synonymous SNV . 0 37 hm5C_associated_SNPs_34905 0 0 1 0 1 PHF20L1 chr8:133855120 5'GT 133855120 Upstream 88bp
chr16 1398406 1398406 1 + G A SKCM 1398411 + 1398391 1398431 41 CTGAGGAGGCTGGAAGGCCGCACCAGCAAGGAGGCGCAGGA CTGAGGAGGCTGGAAAGCCGCACCAGCAAGGAGGCGCAGGA < 41bp 1 0.680806961939775 1 0.318577468395233 experiment 0.638386076120451 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1398411 chr16:1398406 nonsynonymous SNV 0.733 2 16 hm5C_associated_SNPs_34906 0 0 0 0 1 BAIAP3 chr16:1398380 3'AG 1398380 Downstream 27bp
chr19 10941706 10941706 1 + C T SKCM 10941686 + 10941666 10941706 41 TGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGC TGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGT < 41bp 1 0.048202950800998 1 0.0773702263832092 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941686 chr19:10941706 nonsynonymous SNV 0.996 1 41 hm5C_associated_SNPs_34907 0 0 1 0 2 DNM2 chr19:10941654 3'AG 10941654 Downstream 53bp
chr19 10941706 10941706 1 + C T SKCM 10941686 + 10941666 10941706 41 TGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGC TGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGT < 41bp 1 0.048202950800998 1 0.0773702263832092 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941686 chr19:10941706 nonsynonymous SNV 0.996 1 41 hm5C_associated_SNPs_34907 0 0 1 0 2 DNM2 chr19:10941657 3'AG 10941657 Downstream 50bp
chr19 10941706 10941706 1 + C T SKCM 10941687 + 10941667 10941707 41 GCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGCC GCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGTC < 41bp 1 0.261595524678367 1 0.0709146559238434 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941687 chr19:10941706 nonsynonymous SNV 0.996 1 40 hm5C_associated_SNPs_34908 0 0 1 0 2 DNM2 chr19:10941654 3'AG 10941654 Downstream 53bp
chr19 10941706 10941706 1 + C T SKCM 10941687 + 10941667 10941707 41 GCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGCC GCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGTC < 41bp 1 0.261595524678367 1 0.0709146559238434 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941687 chr19:10941706 nonsynonymous SNV 0.996 1 40 hm5C_associated_SNPs_34908 0 0 1 0 2 DNM2 chr19:10941657 3'AG 10941657 Downstream 50bp
chr4 79396728 79396728 1 + G A SKCM 79396708 + 79396688 79396728 41 AGGCACCGCCAGCTCCAGCTCCAGGGTCAGCTCCCAACCTG AGGCACCGCCAGCTCCAGCTCCAGGGTCAGCTCCCAACCTA < 41bp 1 0.371958466256219 1 0.930526733398438 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79396708 chr4:79396728 nonsynonymous SNV 0.985 3 41 hm5C_associated_SNPs_34909 0 0 0 0 1 FRAS1 chr4:79396760 5'GT 79396760 Upstream 33bp
chr11 67376978 67376978 1 + C T SKCM 67376960 + 67376940 67376980 41 TGAACGCAGACGAGGGGGAGCCGGGCACCTGCAAGGACCGG TGAACGCAGACGAGGGGGAGCCGGGCACCTGCAAGGACTGG < 41bp 1 0.436945492100893 1 0.729698717594147 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67376960 chr11:67376978 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_34910 0 0 1 0 1 NDUFV1 chr11:67376923 3'AG 67376923 Downstream 56bp
chr20 30753170 30753170 1 + C T SKCM 30753183 + 30753163 30753203 41 CTTCTGGCTGCTAACGGGTACCATCGGCTTCTATGCAGCCT CTTCTGGTTGCTAACGGGTACCATCGGCTTCTATGCAGCCT < 41bp 1 0.0450069099004003 1 0.149414449930191 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30753183 chr20:30753170 synonymous SNV . 0 8 hm5C_associated_SNPs_34911 0 0 1 0 1 TM9SF4 chr20:30753098 3'AG 30753098 Downstream 73bp
chr20 42680142 42680142 1 + C T SKCM 42680122 + 42680102 42680142 41 TCCCCATCACCGCCGGGGAGCAAGTCAGCGACCCCCTCTCC TCCCCATCACCGCCGGGGAGCAAGTCAGCGACCCCCTCTCT < 41bp 1 0.408216099553447 1 0.155723750591278 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42680122 chr20:42680142 nonsynonymous SNV 0.767 4 41 hm5C_associated_SNPs_34912 0 0 0 0 1 TOX2 chr20:42680185 5'GT 42680185 Upstream 44bp
chr7 91735013 91735013 1 + G A SKCM 91735017 + 91734997 91735037 41 AATTTTTGGTTCGACGGTGGCATCGAGTCACAGGTTCTGTT AATTTTTGGTTCGACGATGGCATCGAGTCACAGGTTCTGTT < 41bp 1 0.142934764156801 1 0.144134610891342 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91735017 chr7:91735013 synonymous SNV . 0 17 hm5C_associated_SNPs_34913 0 0 1 0 2 AKAP9 chr7:91734992 3'AG 91734992 Downstream 22bp
chr7 91735013 91735013 1 + G A SKCM 91735017 + 91734997 91735037 41 AATTTTTGGTTCGACGGTGGCATCGAGTCACAGGTTCTGTT AATTTTTGGTTCGACGATGGCATCGAGTCACAGGTTCTGTT < 41bp 1 0.142934764156801 1 0.144134610891342 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91735017 chr7:91735013 synonymous SNV . 0 17 hm5C_associated_SNPs_34913 0 0 1 0 2 AKAP9 chr7:91735077 5'GT 91735077 Upstream 65bp
chr4 76711342 76711342 1 + G A SKCM 76711339 + 76711319 76711359 41 CAGAAGTTATTCGAGGCTGCCAAGTAAACCAAGACTACTTT CAGAAGTTATTCGAGGCTGCCAAATAAACCAAGACTACTTT < 41bp 1 0.230660916460121 1 0.463884383440018 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control USO1 ENSG00000138768 CDS Human protein_coding chr4:76711339 chr4:76711342 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_34914 0 0 1 0 2 USO1 chr4:76711303 3'AG 76711303 Downstream 40bp
chr4 76711342 76711342 1 + G A SKCM 76711339 + 76711319 76711359 41 CAGAAGTTATTCGAGGCTGCCAAGTAAACCAAGACTACTTT CAGAAGTTATTCGAGGCTGCCAAATAAACCAAGACTACTTT < 41bp 1 0.230660916460121 1 0.463884383440018 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control USO1 ENSG00000138768 CDS Human protein_coding chr4:76711339 chr4:76711342 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_34914 0 0 1 0 2 USO1 chr4:76711391 5'GT 76711391 Upstream 50bp
chr15 81214439 81214439 1 + G A SKCM 81214448 + 81214428 81214468 41 CACATTCCACTGGGAAAATTCTATAACAACCGAGCACATTC CACATTCCACTAGGAAAATTCTATAACAACCGAGCACATTC < 41bp 1 0.299713209549033 1 0.244575679302216 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81214448 chr15:81214439 synonymous SNV . 0 12 hm5C_associated_SNPs_34915 0 0 0 0 2 CEMIP chr15:81214350 3'AG 81214350 Downstream 90bp
chr15 81214439 81214439 1 + G A SKCM 81214448 + 81214428 81214468 41 CACATTCCACTGGGAAAATTCTATAACAACCGAGCACATTC CACATTCCACTAGGAAAATTCTATAACAACCGAGCACATTC < 41bp 1 0.299713209549033 1 0.244575679302216 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81214448 chr15:81214439 synonymous SNV . 0 12 hm5C_associated_SNPs_34915 0 0 0 0 2 CEMIP chr15:81214478 5'GT 81214478 Upstream 40bp
chr16 1398407 1398407 1 + G A SKCM 1398411 + 1398391 1398431 41 CTGAGGAGGCTGGAAGGCCGCACCAGCAAGGAGGCGCAGGA CTGAGGAGGCTGGAAGACCGCACCAGCAAGGAGGCGCAGGA < 41bp 1 0.726574395312791 1 0.528276860713959 experiment 0.546851209374419 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1398411 chr16:1398407 nonsynonymous SNV 0.671 3 17 hm5C_associated_SNPs_34916 0 0 0 0 1 BAIAP3 chr16:1398380 3'AG 1398380 Downstream 28bp
chr13 99047569 99047569 1 + C T SKCM 99047580 + 99047560 99047600 41 CGAAGGTTTCCGCCGGGGAGCCGGGGTCGCACCCGAGCCCT CGAAGGTTTTCGCCGGGGAGCCGGGGTCGCACCCGAGCCCT < 41bp 1 0.728752841008079 1 0.75559675693512 experiment 0.542494317983842 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99047580 chr13:99047569 nonsynonymous SNV 0.000 0 10 hm5C_associated_SNPs_34917 0 0 0 0 1 FARP1 chr13:99047481 3'AG 99047481 Downstream 89bp
chr19 14674799 14674799 1 + C T SKCM 14674819 + 14674799 14674839 41 CCTAACAGAGTACGCGGGGCCCCTTTTCATCTACCTGCTCT TCTAACAGAGTACGCGGGGCCCCTTTTCATCTACCTGCTCT < 41bp 1 0.13198151015112 1 0.0497346222400665 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TECR ENSG00000099797 CDS Human protein_coding chr19:14674819 chr19:14674799 nonsynonymous SNV . 0 1 hm5C_associated_SNPs_34924 0 0 0 0 1 TECR chr19:14674794 3'AG 14674794 Downstream 6bp
chrX 48369807 48369807 1 + C T SKCM 48369821 + 48369801 48369841 41 GCTGTTCCTCTGCCGACATTCCTCCCATCGAGGCGTCTTCC GCTGTTTCTCTGCCGACATTCCTCCCATCGAGGCGTCTTCC < 41bp 1 0.0750325726349174 1 0.0501386225223541 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PORCN ENSG00000102312 CDS Human protein_coding chrX:48369821 chrX:48369807 nonsynonymous SNV . 0 7 hm5C_associated_SNPs_34925 0 0 1 0 2 PORCN chrX:48369754 3'AG 48369754 Downstream 54bp
chrX 48369807 48369807 1 + C T SKCM 48369821 + 48369801 48369841 41 GCTGTTCCTCTGCCGACATTCCTCCCATCGAGGCGTCTTCC GCTGTTTCTCTGCCGACATTCCTCCCATCGAGGCGTCTTCC < 41bp 1 0.0750325726349174 1 0.0501386225223541 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PORCN ENSG00000102312 CDS Human protein_coding chrX:48369821 chrX:48369807 nonsynonymous SNV . 0 7 hm5C_associated_SNPs_34925 0 0 1 0 2 PORCN chrX:48369875 5'GT 48369875 Upstream 69bp
chr1 57157076 57157076 1 + G A SKCM 57157082 + 57157062 57157102 41 AAAAGATACCAGGTGATCAGCACTCCAACAGATTTTTTTAT AAAAGATACCAGGTAATCAGCACTCCAACAGATTTTTTTAT < 41bp 1 0.0488095043315406 1 0.25661963224411 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57157082 chr1:57157076 synonymous SNV . 0 15 hm5C_associated_SNPs_34926 0 0 1 0 2 PRKAA2 chr1:57157067 3'AG 57157067 Downstream 10bp
chr1 57157076 57157076 1 + G A SKCM 57157082 + 57157062 57157102 41 AAAAGATACCAGGTGATCAGCACTCCAACAGATTTTTTTAT AAAAGATACCAGGTAATCAGCACTCCAACAGATTTTTTTAT < 41bp 1 0.0488095043315406 1 0.25661963224411 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57157082 chr1:57157076 synonymous SNV . 0 15 hm5C_associated_SNPs_34926 0 0 1 0 2 PRKAA2 chr1:57157160 5'GT 57157160 Upstream 85bp
chr13 41650183 41650183 1 + C T SKCM 41650198 + 41650178 41650218 41 AGAATCCAGATGGGAGAAACCTGATGATTTCATTCCACACA AGAATTCAGATGGGAGAAACCTGATGATTTCATTCCACACA < 41bp 1 0.664407506937874 1 0.121343016624451 experiment 0.671184986124251 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WBP4 ENSG00000120688 CDS Human protein_coding chr13:41650198 chr13:41650183 nonsynonymous SNV 1.000 5 6 hm5C_associated_SNPs_34927 0 0 0 0 1 WBP4 chr13:41650180 3'AG 41650180 Downstream 4bp
chrX 69639608 69639608 1 + C T SKCM 69639607 + 69639587 69639627 41 CAGGATTGAGCTTCTTTAATCCCGTCTGTGCCACCCCCAAT CAGGATTGAGCTTCTTTAATCTCGTCTGTGCCACCCCCAAT < 41bp 1 0.661113812970781 1 0.239813387393951 experiment 0.677772374058438 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639607 chrX:69639608 nonsynonymous SNV 0.870 2 22 hm5C_associated_SNPs_34928 0 0 1 0 2 KIF4A chrX:69639511 3'AG 69639511 Downstream 98bp
chrX 69639608 69639608 1 + C T SKCM 69639607 + 69639587 69639627 41 CAGGATTGAGCTTCTTTAATCCCGTCTGTGCCACCCCCAAT CAGGATTGAGCTTCTTTAATCTCGTCTGTGCCACCCCCAAT < 41bp 1 0.661113812970781 1 0.239813387393951 experiment 0.677772374058438 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639607 chrX:69639608 nonsynonymous SNV 0.870 2 22 hm5C_associated_SNPs_34928 0 0 1 0 2 KIF4A chrX:69639633 5'GT 69639633 Upstream 26bp
chr19 14562765 14562765 1 + C T SKCM 14562777 + 14562757 14562797 41 CGCCCAGCCCGGGGCCTTTACAGCCGAAGCGGAAGCCTCAG CGCCCAGCTCGGGGCCTTTACAGCCGAAGCGGAAGCCTCAG < 41bp 1 0.589758242376012 1 0.808225870132446 experiment 0.820483515247975 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562777 chr19:14562765 synonymous SNV . 0 9 hm5C_associated_SNPs_34929 0 0 1 0 1 PKN1 chr19:14562835 5'GT 14562835 Upstream 71bp
chr5 142264914 142264914 1 + G A SKCM 142264910 + 142264890 142264930 41 ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTT ACAGAAAAGTATTGTGGCATCTTAAAAAAACACTTGAATTT < 41bp 1 0.172885068694565 1 0.366065621376038 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142264910 chr5:142264914 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_34930 0 0 1 0 2 ARHGAP26 chr5:142264863 3'AG 142264863 Downstream 52bp
chr5 142264914 142264914 1 + G A SKCM 142264910 + 142264890 142264930 41 ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTT ACAGAAAAGTATTGTGGCATCTTAAAAAAACACTTGAATTT < 41bp 1 0.172885068694565 1 0.366065621376038 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142264910 chr5:142264914 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_34930 0 0 1 0 2 ARHGAP26 chr5:142264964 5'GT 142264964 Upstream 51bp
chr15 42137229 42137229 1 + C A SKCM 42137230 + 42137210 42137250 41 ACCCAAGCTGCTTCACCAACCTGTGGGCCCTCATCAACGAG ACCCAAGCTGCTTCACCAAACTGTGGGCCCTCATCAACGAG < 41bp 1 0.531846673528296 1 0.434273242950439 experiment 0.936306652943407 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42137230 chr15:42137229 nonsynonymous SNV 0.997 1 20 hm5C_associated_SNPs_34931 0 0 0 0 1 JMJD7-PLA2G4B;PLA2G4B chr15:42137268 5'GT 42137268 Upstream 40bp
chr21 42629149 42629149 1 + C T SKCM 42629163 + 42629143 42629183 41 TTTCCCCATCCACAAATGCGCTGGTGATCGGTGCCACGGTG TTTCCCTATCCACAAATGCGCTGGTGATCGGTGCCACGGTG < 41bp 1 0.518418254231845 1 0.183394521474838 experiment 0.963163491536311 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BACE2 ENSG00000182240 CDS Human protein_coding chr21:42629163 chr21:42629149 nonsynonymous SNV 0.855 0 7 hm5C_associated_SNPs_34932 0 0 1 0 1 BACE2 chr21:42629085 3'AG 42629085 Downstream 65bp
chr19 14562766 14562766 1 + C T SKCM 14562777 + 14562757 14562797 41 CGCCCAGCCCGGGGCCTTTACAGCCGAAGCGGAAGCCTCAG CGCCCAGCCTGGGGCCTTTACAGCCGAAGCGGAAGCCTCAG < 41bp 1 0.581065979352004 1 0.773245453834534 experiment 0.837868041295991 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562777 chr19:14562766 nonsynonymous SNV 0.952 3 10 hm5C_associated_SNPs_34933 0 0 1 0 1 PKN1 chr19:14562835 5'GT 14562835 Upstream 70bp
chr6 149691194 149691194 1 + C T SKCM 149691182 + 149691162 149691202 41 TTCAGGTTTTACATGACCTGCGACAAAAATTCCCTGAAGTA TTCAGGTTTTACATGACCTGCGACAAAAATTCTCTGAAGTA < 41bp 1 0.510538009842296 1 0.222627967596054 experiment 0.978923980315407 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAB2 ENSG00000055208 CDS Human protein_coding chr6:149691182 chr6:149691194 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_34934 0 0 1 0 1 TAB2 chr6:149691235 5'GT 149691235 Upstream 42bp
chr5 90083966 90083966 1 + G A SKCM 90083965 + 90083945 90083985 41 GACATTGCAGACCCAGTGAGCGGGTTGTTCTATTTTGGAGA GACATTGCAGACCCAGTGAGCAGGTTGTTCTATTTTGGAGA < 41bp 1 0.1576536139803 1 0.763437271118164 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ADGRV1 ENSG00000164199 CDS Human protein_coding chr5:90083965 chr5:90083966 nonsynonymous SNV 0.104 4 22 hm5C_associated_SNPs_34935 0 0 1 0 1 ADGRV1 chr5:90083888 3'AG 90083888 Downstream 79bp
chr11 598398 598398 1 + C T SKCM 598413 + 598393 598433 41 GTCTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGCGACTG GTCTTTCCTGCTGGATGAAGCCATCGAGGCTGTGGCGACTG < 41bp 1 0.135634290945272 1 0.35151869058609 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:598413 chr11:598398 nonsynonymous SNV 0.146 4 6 hm5C_associated_SNPs_34936 0 0 1 0 1 PHRF1 chr11:598373 3'AG 598373 Downstream 26bp
chr16 23700962 23700962 1 + C T SKCM 23700976 + 23700956 23700996 41 CTGCACCTCAGCAACGGCAGCGTGCAGATCAACTTCTTCCA CTGCACTTCAGCAACGGCAGCGTGCAGATCAACTTCTTCCA < 41bp 1 0.190336303018708 1 0.131855338811874 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700976 chr16:23700962 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_34937 0 0 1 0 1 PLK1 chr16:23700997 5'GT 23700997 Upstream 36bp
chr19 7676661 7676661 1 + C T SKCM 7676663 + 7676643 7676683 41 GGAGACCCTGTGCTCCTCCGCTCTGTGAGCTCGGACAGCCT GGAGACCCTGTGCTCCTCTGCTCTGTGAGCTCGGACAGCCT < 41bp 1 0.284400253289427 1 0.153377294540405 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7676663 chr19:7676661 nonsynonymous SNV 0.982 3 19 hm5C_associated_SNPs_34938 0 0 1 0 1 CAMSAP3 chr19:7676573 3'AG 7676573 Downstream 89bp
chr1 173454548 173454548 1 + C T SKCM 173454543 + 173454523 173454563 41 AGAGCCCACAGAAAAGTTACCTTTTCCCATCATCGATGATA AGAGCCCACAGAAAAGTTACCTTTTTCCATCATCGATGATA < 41bp 1 0.10453367319268 1 0.00985977053642273 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173454543 chr1:173454548 nonsynonymous SNV 0.999 4 26 hm5C_associated_SNPs_34940 0 0 1 0 2 PRDX6 chr1:173454500 3'AG 173454500 Downstream 49bp
chr1 173454548 173454548 1 + C T SKCM 173454543 + 173454523 173454563 41 AGAGCCCACAGAAAAGTTACCTTTTCCCATCATCGATGATA AGAGCCCACAGAAAAGTTACCTTTTTCCATCATCGATGATA < 41bp 1 0.10453367319268 1 0.00985977053642273 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173454543 chr1:173454548 nonsynonymous SNV 0.999 4 26 hm5C_associated_SNPs_34940 0 0 1 0 2 PRDX6 chr1:173454646 5'GT 173454646 Upstream 99bp
chr10 70525792 70525792 1 + C T SKCM 70525803 + 70525783 70525823 41 TTGAGTGTCCTATTGGACTACAGATTAGAGGATAATAAAGA TTGAGTGTCTTATTGGACTACAGATTAGAGGATAATAAAGA < 41bp 1 0.234427854993762 1 0.336956381797791 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70525803 chr10:70525792 synonymous SNV . 0 10 hm5C_associated_SNPs_34944 0 0 1 0 1 CCAR1 chr10:70525836 5'GT 70525836 Upstream 45bp
chr19 50983459 50983459 1 + C T SKCM 50983456 + 50983436 50983476 41 GGAAGCTGGTGGCTATGTCTCCTCCTTTGTCCCTGCGGTGA GGAAGCTGGTGGCTATGTCTCCTTCTTTGTCCCTGCGGTGA < 41bp 1 0.0633663023343558 1 0.154699176549911 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMC10 ENSG00000161671 CDS Human protein_coding chr19:50983456 chr19:50983459 nonsynonymous SNV 0.807 4 24 hm5C_associated_SNPs_34945 0 0 1 0 2 EMC10 chr19:50983368 3'AG 50983368 Downstream 92bp
chr19 50983459 50983459 1 + C T SKCM 50983456 + 50983436 50983476 41 GGAAGCTGGTGGCTATGTCTCCTCCTTTGTCCCTGCGGTGA GGAAGCTGGTGGCTATGTCTCCTTCTTTGTCCCTGCGGTGA < 41bp 1 0.0633663023343558 1 0.154699176549911 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMC10 ENSG00000161671 CDS Human protein_coding chr19:50983456 chr19:50983459 nonsynonymous SNV 0.807 4 24 hm5C_associated_SNPs_34945 0 0 1 0 2 EMC10 chr19:50983472 5'GT 50983472 Upstream 14bp
chr9 33912014 33912014 1 + C G SKCM 33912033 + 33912013 33912053 41 CCCAGCCAATGTCGATGCTTCAGTTATGTTCAGGAAATGGA CGCAGCCAATGTCGATGCTTCAGTTATGTTCAGGAAATGGA < 41bp 1 0.138940540068682 1 0.0724875032901764 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33912033 chr9:33912014 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_34946 0 0 1 0 2 UBE2R2 chr9:33911962 3'AG 33911962 Downstream 53bp
chr9 33912014 33912014 1 + C G SKCM 33912033 + 33912013 33912053 41 CCCAGCCAATGTCGATGCTTCAGTTATGTTCAGGAAATGGA CGCAGCCAATGTCGATGCTTCAGTTATGTTCAGGAAATGGA < 41bp 1 0.138940540068682 1 0.0724875032901764 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33912033 chr9:33912014 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_34946 0 0 1 0 2 UBE2R2 chr9:33912096 5'GT 33912096 Upstream 83bp
chr1 150957092 150957092 1 + G A SKCM 150957105 + 150957085 150957125 41 GGCCATTGAAATTCTTGCCACTCGAACCCCACCCCAGCTGC GGCCATTAAAATTCTTGCCACTCGAACCCCACCCCAGCTGC < 41bp 1 0.78920283393905 1 0.917777717113495 experiment 0.421594332121899 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANXA9 ENSG00000143412 CDS Human protein_coding chr1:150957105 chr1:150957092 nonsynonymous SNV 0.844 4 8 hm5C_associated_SNPs_34947 0 0 0 0 2 ANXA9 chr1:150957062 3'AG 150957062 Downstream 31bp
chr1 150957092 150957092 1 + G A SKCM 150957105 + 150957085 150957125 41 GGCCATTGAAATTCTTGCCACTCGAACCCCACCCCAGCTGC GGCCATTAAAATTCTTGCCACTCGAACCCCACCCCAGCTGC < 41bp 1 0.78920283393905 1 0.917777717113495 experiment 0.421594332121899 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANXA9 ENSG00000143412 CDS Human protein_coding chr1:150957105 chr1:150957092 nonsynonymous SNV 0.844 4 8 hm5C_associated_SNPs_34947 0 0 0 0 2 ANXA9 chr1:150957152 5'GT 150957152 Upstream 61bp
chr17 43323053 43323053 1 + C T SKCM 43323037 + 43323017 43323057 41 GTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCCCAGG GTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCTCAGG < 41bp 1 0.4569715250029 1 0.291624009609222 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FMNL1 ENSG00000184922 CDS Human antisense chr17:43323037 chr17:43323053 nonsynonymous SNV 0.838 4 37 hm5C_associated_SNPs_34949 0 0 1 1 3 FMNL1 chr17:43322986 3'AG 43322986 Downstream 68bp
chr17 43323053 43323053 1 + C T SKCM 43323037 + 43323017 43323057 41 GTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCCCAGG GTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCTCAGG < 41bp 1 0.4569715250029 1 0.291624009609222 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43323037 chr17:43323053 nonsynonymous SNV 0.838 4 37 hm5C_associated_SNPs_34949 0 0 1 1 3 FMNL1 chr17:43322999 3'AG 43322999 Downstream 55bp
chr17 43323053 43323053 1 + C T SKCM 43323037 + 43323017 43323057 41 GTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCCCAGG GTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCTCAGG < 41bp 1 0.4569715250029 1 0.291624009609222 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43323037 chr17:43323053 nonsynonymous SNV 0.838 4 37 hm5C_associated_SNPs_34949 0 0 1 1 3 FMNL1 chr17:43323100 5'GT 43323100 Upstream 48bp
chr2 179257251 179257251 1 + C T SKCM 179257242 + 179257222 179257262 41 GATCTCCTTCCACCAACAGACGCCCGGTTCCGGCCAGATCA GATCTCCTTCCACCAACAGACGCCCGGTTTCGGCCAGATCA < 41bp 1 0.223669174678501 1 0.156005263328552 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179257242 chr2:179257251 synonymous SNV . 0 30 hm5C_associated_SNPs_34950 0 0 0 0 1 OSBPL6 chr2:179257265 5'GT 179257265 Upstream 15bp
chr2 179257251 179257251 1 + C T SKCM 179257245 + 179257225 179257265 41 CTCCTTCCACCAACAGACGCCCGGTTCCGGCCAGATCAAAG CTCCTTCCACCAACAGACGCCCGGTTTCGGCCAGATCAAAG < 41bp 1 0.0947525061558143 1 0.0858584940433502 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179257245 chr2:179257251 synonymous SNV . 0 27 hm5C_associated_SNPs_34951 0 0 0 0 1 OSBPL6 chr2:179257265 5'GT 179257265 Upstream 15bp
chr2 179257251 179257251 1 + C T SKCM 179257252 + 179257232 179257272 41 CACCAACAGACGCCCGGTTCCGGCCAGATCAAAGGTGAGGA CACCAACAGACGCCCGGTTTCGGCCAGATCAAAGGTGAGGA < 41bp 1 0.333000623935929 1 0.51738029718399 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179257252 chr2:179257251 synonymous SNV . 0 20 hm5C_associated_SNPs_34952 0 0 0 0 1 OSBPL6 chr2:179257265 5'GT 179257265 Upstream 15bp
chr12 57970130 57970130 1 + G A SKCM 57970126 + 57970106 57970146 41 GCCCGGCTCCGGGACGAGATCAACGAGAAGCAGAAGACCAT GCCCGGCTCCGGGACGAGATCAACAAGAAGCAGAAGACCAT < 41bp 1 0.773047063747109 1 0.224052548408508 experiment 0.453905872505782 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF5A ENSG00000155980 CDS Human protein_coding chr12:57970126 chr12:57970130 nonsynonymous SNV 0.979 1 25 hm5C_associated_SNPs_34953 0 0 0 0 1 KIF5A chr12:57970052 3'AG 57970052 Downstream 79bp
chr10 102112181 102112181 1 + G A SKCM 102112188 + 102112168 102112208 41 CTCATCGTCTGTGGAGCCACCGCTCTTACAAAGCTCGGCTG CTCATCGTCTGTGAAGCCACCGCTCTTACAAAGCTCGGCTG < 41bp 1 0.312956613488361 1 0.445779979228973 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCD ENSG00000099194 CDS Human protein_coding chr10:102112188 chr10:102112181 stopgain 0.887 1 14 hm5C_associated_SNPs_34954 0 0 1 0 2 SCD chr10:102112123 3'AG 102112123 Downstream 59bp
chr10 102112181 102112181 1 + G A SKCM 102112188 + 102112168 102112208 41 CTCATCGTCTGTGGAGCCACCGCTCTTACAAAGCTCGGCTG CTCATCGTCTGTGAAGCCACCGCTCTTACAAAGCTCGGCTG < 41bp 1 0.312956613488361 1 0.445779979228973 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCD ENSG00000099194 CDS Human protein_coding chr10:102112188 chr10:102112181 stopgain 0.887 1 14 hm5C_associated_SNPs_34954 0 0 1 0 2 SCD chr10:102112253 5'GT 102112253 Upstream 73bp
chr17 37676259 37676259 1 + C T SKCM 37676240 + 37676220 37676260 41 CAGCACTTGATTTATTGGACCACATGCTGACACTAGATCCT CAGCACTTGATTTATTGGACCACATGCTGACACTAGATCTT < 41bp 1 0.143344659298962 1 0.0492675304412842 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDK12 ENSG00000167258 CDS Human protein_coding chr17:37676240 chr17:37676259 nonsynonymous SNV 0.999 4 40 hm5C_associated_SNPs_34955 0 0 1 0 1 CDK12 chr17:37676209 3'AG 37676209 Downstream 51bp
chr17 37676259 37676259 1 + C T SKCM 37676272 + 37676252 37676292 41 CTAGATCCTAGTAAGCGGTGCACAGCTGAACAGACCCTACA CTAGATCTTAGTAAGCGGTGCACAGCTGAACAGACCCTACA < 41bp 1 0.209714270647293 1 0.162405729293823 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37676272 chr17:37676259 nonsynonymous SNV 0.999 4 8 hm5C_associated_SNPs_34956 0 0 1 0 1 CDK12 chr17:37676209 3'AG 37676209 Downstream 51bp
chr11 404269 404269 1 + C T SKCM 404268 + 404248 404288 41 GAAGTCCTCCCGGGCAGCATCCAGCCTCCTGGCCAACCTGT GAAGTCCTCCCGGGCAGCATCTAGCCTCCTGGCCAACCTGT < 41bp 1 0.310341199198893 1 0.453245997428894 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PKP3 ENSG00000184363 CDS Human protein_coding chr11:404268 chr11:404269 synonymous SNV . 0 22 hm5C_associated_SNPs_34958 0 0 0 0 2 PKP3 chr11:404236 3'AG 404236 Downstream 34bp
chr11 404269 404269 1 + C T SKCM 404268 + 404248 404288 41 GAAGTCCTCCCGGGCAGCATCCAGCCTCCTGGCCAACCTGT GAAGTCCTCCCGGGCAGCATCTAGCCTCCTGGCCAACCTGT < 41bp 1 0.310341199198893 1 0.453245997428894 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PKP3 ENSG00000184363 CDS Human protein_coding chr11:404268 chr11:404269 synonymous SNV . 0 22 hm5C_associated_SNPs_34958 0 0 0 0 2 PKP3 chr11:404323 5'GT 404323 Upstream 55bp
chr22 20755036 20755036 1 + C T SKCM 20755030 + 20755010 20755050 41 ATGTGATGTTGGAGAACTACCAGAACCTTCTTGCCCTAGGT ATGTGATGTTGGAGAACTACCAGAACTTTCTTGCCCTAGGT < 41bp 1 0.782374072150179 1 0.639941573143005 experiment 0.435251855699641 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF74 ENSG00000185252 CDS Human protein_coding chr22:20755030 chr22:20755036 nonsynonymous SNV 0.998 3 27 hm5C_associated_SNPs_34964 0 0 1 0 1 ZNF74 chr22:20755048 5'GT 20755048 Upstream 13bp
chr2 86705312 86705312 1 + C T SKCM 86705303 + 86705283 86705323 41 TTATTTGCAGGTGCTGCTTACAAGACTTTCTCTTGGCTAAA TTATTTGCAGGTGCTGCTTACAAGACTTTTTCTTGGCTAAA < 41bp 1 0.526111738613603 1 0.37786602973938 experiment 0.947776522772795 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KDM3A ENSG00000115548 CDS Human protein_coding chr2:86705303 chr2:86705312 synonymous SNV . 0 30 hm5C_associated_SNPs_34966 0 0 1 0 2 KDM3A chr2:86705293 3'AG 86705293 Downstream 20bp
chr2 86705312 86705312 1 + C T SKCM 86705303 + 86705283 86705323 41 TTATTTGCAGGTGCTGCTTACAAGACTTTCTCTTGGCTAAA TTATTTGCAGGTGCTGCTTACAAGACTTTTTCTTGGCTAAA < 41bp 1 0.526111738613603 1 0.37786602973938 experiment 0.947776522772795 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KDM3A ENSG00000115548 CDS Human protein_coding chr2:86705303 chr2:86705312 synonymous SNV . 0 30 hm5C_associated_SNPs_34966 0 0 1 0 2 KDM3A chr2:86705388 5'GT 86705388 Upstream 77bp
chr11 73063910 73063910 1 + C T SKCM 73063909 + 73063889 73063929 41 GCTGAAGCAGCCAGAGAACTCCGTGCTCTGTGACCCTTCAC GCTGAAGCAGCCAGAGAACTCTGTGCTCTGTGACCCTTCAC < 41bp 1 0.465120982755293 1 0.491467356681824 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73063909 chr11:73063910 synonymous SNV . 0 22 hm5C_associated_SNPs_34967 0 0 0 0 1 ARHGEF17 chr11:73063875 3'AG 73063875 Downstream 36bp
chr16 2122313 2122313 1 + C T SKCM 2122321 + 2122301 2122341 41 TAAAGTGCTCATCTTTACTTCCCCTTGCAGTGTGGACCAGC TAAAGTGCTCATTTTTACTTCCCCTTGCAGTGTGGACCAGC < 41bp 1 0.102161814905649 1 0.0213526487350464 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2122321 chr16:2122313 synonymous SNV . 0 13 hm5C_associated_SNPs_34968 0 0 1 0 2 TSC2 chr16:2122242 3'AG 2122242 Downstream 72bp
chr16 2122313 2122313 1 + C T SKCM 2122321 + 2122301 2122341 41 TAAAGTGCTCATCTTTACTTCCCCTTGCAGTGTGGACCAGC TAAAGTGCTCATTTTTACTTCCCCTTGCAGTGTGGACCAGC < 41bp 1 0.102161814905649 1 0.0213526487350464 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2122321 chr16:2122313 synonymous SNV . 0 13 hm5C_associated_SNPs_34968 0 0 1 0 2 TSC2 chr16:2122364 5'GT 2122364 Upstream 52bp
chr10 106014944 106014944 1 + C T SKCM 106014932 + 106014912 106014952 41 CCCCGGCAGGAAGCGCGCCCCCGGGGCCGGTCCCGGAGGGC CCCCGGCAGGAAGCGCGCCCCCGGGGCCGGTCTCGGAGGGC < 41bp 1 0.759382875444717 1 0.861501336097717 experiment 0.481234249110565 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GSTO1 ENSG00000148834 CDS Human protein_coding chr10:106014932 chr10:106014944 nonsynonymous SNV 0.498 3 33 hm5C_associated_SNPs_34969 0 0 1 0 2 GSTO1 chr10:106014921 3'AG 106014921 Downstream 24bp
chr10 106014944 106014944 1 + C T SKCM 106014932 + 106014912 106014952 41 CCCCGGCAGGAAGCGCGCCCCCGGGGCCGGTCCCGGAGGGC CCCCGGCAGGAAGCGCGCCCCCGGGGCCGGTCTCGGAGGGC < 41bp 1 0.759382875444717 1 0.861501336097717 experiment 0.481234249110565 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GSTO1 ENSG00000148834 CDS Human protein_coding chr10:106014932 chr10:106014944 nonsynonymous SNV 0.498 3 33 hm5C_associated_SNPs_34969 0 0 1 0 2 GSTO1 chr10:106015029 5'GT 106015029 Upstream 86bp
chr11 68131380 68131380 1 + C T SKCM 68131399 + 68131379 68131419 41 TCCAGGTGCTGAGCCAGGAGCGGCAGCCTTTCTGTGAGTGC TTCAGGTGCTGAGCCAGGAGCGGCAGCCTTTCTGTGAGTGC < 41bp 1 0.632439459937736 1 0.349342346191406 experiment 0.735121080124528 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68131399 chr11:68131380 synonymous SNV . 0 2 hm5C_associated_SNPs_34970 0 0 1 0 1 LRP5 chr11:68131411 5'GT 68131411 Upstream 32bp
chr1 171756877 171756877 1 + C T SKCM 171756878 + 171756858 171756898 41 TCTGGTTGTACCTTCAGGTCCCCTTTCTGTCTGTGGGTGGG TCTGGTTGTACCTTCAGGTTCCCTTTCTGTCTGTGGGTGGG < 41bp 1 0.0946675120221161 1 0.0265224575996399 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171756878 chr1:171756877 synonymous SNV . 0 20 hm5C_associated_SNPs_34971 0 0 0 0 1 METTL13 chr1:171756875 3'AG 171756875 Downstream 3bp
chr2 211456626 211456626 1 + C T SKCM 211456636 + 211456616 211456656 41 CATGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAA CATGGCTATGTCTTGGACAACACCCTCCCTGCTGGCTGGAA < 41bp 1 0.228879066654749 1 0.0752942562103271 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456636 chr2:211456626 nonsynonymous SNV 0.994 3 11 hm5C_associated_SNPs_34972 0 0 1 0 2 CPS1 chr2:211456555 3'AG 211456555 Downstream 72bp
chr2 211456626 211456626 1 + C T SKCM 211456636 + 211456616 211456656 41 CATGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAA CATGGCTATGTCTTGGACAACACCCTCCCTGCTGGCTGGAA < 41bp 1 0.228879066654749 1 0.0752942562103271 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456636 chr2:211456626 nonsynonymous SNV 0.994 3 11 hm5C_associated_SNPs_34972 0 0 1 0 2 CPS1 chr2:211456693 5'GT 211456693 Upstream 68bp
chr2 211456626 211456626 1 + C T SKCM 211456638 + 211456618 211456658 41 TGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAAAC TGGCTATGTCTTGGACAACACCCTCCCTGCTGGCTGGAAAC < 41bp 1 0.0527104058280887 1 0.11089363694191 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456638 chr2:211456626 nonsynonymous SNV 0.994 3 9 hm5C_associated_SNPs_34973 0 0 1 0 2 CPS1 chr2:211456555 3'AG 211456555 Downstream 72bp
chr2 211456626 211456626 1 + C T SKCM 211456638 + 211456618 211456658 41 TGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAAAC TGGCTATGTCTTGGACAACACCCTCCCTGCTGGCTGGAAAC < 41bp 1 0.0527104058280887 1 0.11089363694191 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456638 chr2:211456626 nonsynonymous SNV 0.994 3 9 hm5C_associated_SNPs_34973 0 0 1 0 2 CPS1 chr2:211456693 5'GT 211456693 Upstream 68bp
chr1 22332159 22332159 1 + G A SKCM 22332162 + 22332142 22332182 41 CCTCTGCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTG CCTCTGCCTGCAGGAGGAATCTGACCTACCAGGTGGTGTTG < 41bp 1 0.655445925708439 1 0.447704285383224 experiment 0.689108148583123 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332162 chr1:22332159 nonsynonymous SNV 0.001 1 18 hm5C_associated_SNPs_34974 0 0 0 0 1 CELA3A chr1:22332155 3'AG 22332155 Downstream 5bp
chr1 22332159 22332159 1 + G A SKCM 22332166 + 22332146 22332186 41 TGCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTG TGCCTGCAGGAGGAATCTGACCTACCAGGTGGTGTTGGGTG < 41bp 1 0.0545673749930163 1 0.131043076515198 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332166 chr1:22332159 nonsynonymous SNV 0.001 1 14 hm5C_associated_SNPs_34975 0 0 0 0 1 CELA3A chr1:22332155 3'AG 22332155 Downstream 5bp
chr1 22332159 22332159 1 + G A SKCM 22332167 + 22332147 22332187 41 GCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTGA GCCTGCAGGAGGAATCTGACCTACCAGGTGGTGTTGGGTGA < 41bp 1 0.417897994284598 1 0.062026709318161 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332167 chr1:22332159 nonsynonymous SNV 0.001 1 13 hm5C_associated_SNPs_34976 0 0 0 0 1 CELA3A chr1:22332155 3'AG 22332155 Downstream 5bp
chr1 22332159 22332159 1 + G A SKCM 22332170 + 22332150 22332190 41 TGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTGAGTA TGCAGGAGGAATCTGACCTACCAGGTGGTGTTGGGTGAGTA < 41bp 1 0.433474719779974 1 0.461737483739853 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332170 chr1:22332159 nonsynonymous SNV 0.001 1 10 hm5C_associated_SNPs_34977 0 0 0 0 1 CELA3A chr1:22332155 3'AG 22332155 Downstream 5bp
chr7 66660264 66660264 1 + C T SKCM 66660256 + 66660236 66660276 41 TTGTCCACGAGTTGGTGGATCTGATCCCCGAATATGAAATT TTGTCCACGAGTTGGTGGATCTGATCCCTGAATATGAAATT < 41bp 1 0.252093053132825 1 0.0808355510234833 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66660256 chr7:66660264 synonymous SNV . 0 29 hm5C_associated_SNPs_34978 0 0 0 0 1 TYW1 chr7:66660324 5'GT 66660324 Upstream 61bp
chr7 66660263 66660263 1 + C T SKCM 66660256 + 66660236 66660276 41 TTGTCCACGAGTTGGTGGATCTGATCCCCGAATATGAAATT TTGTCCACGAGTTGGTGGATCTGATCCTCGAATATGAAATT < 41bp 1 0.252504700517009 1 0.09261554479599 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66660256 chr7:66660263 nonsynonymous SNV 0.028 1 28 hm5C_associated_SNPs_34979 0 0 0 0 1 TYW1 chr7:66660324 5'GT 66660324 Upstream 62bp
chr17 19216468 19216468 1 + C T SKCM 19216480 + 19216460 19216500 41 GATGCTCTCCCCAGCTCGGGCCCCGCGGCCCAGAAAGCAGA GATGCTCTTCCCAGCTCGGGCCCCGCGGCCCAGAAAGCAGA < 41bp 1 0.16804722594682 1 0.13419908285141 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EPN2 ENSG00000072134 CDS Human protein_coding chr17:19216480 chr17:19216468 synonymous SNV . 0 9 hm5C_associated_SNPs_34980 0 0 1 0 2 EPN2 chr17:19216418 3'AG 19216418 Downstream 51bp
chr17 19216468 19216468 1 + C T SKCM 19216480 + 19216460 19216500 41 GATGCTCTCCCCAGCTCGGGCCCCGCGGCCCAGAAAGCAGA GATGCTCTTCCCAGCTCGGGCCCCGCGGCCCAGAAAGCAGA < 41bp 1 0.16804722594682 1 0.13419908285141 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EPN2 ENSG00000072134 CDS Human protein_coding chr17:19216480 chr17:19216468 synonymous SNV . 0 9 hm5C_associated_SNPs_34980 0 0 1 0 2 EPN2 chr17:19216436 3'AG 19216436 Downstream 33bp
chr3 193336693 193336693 1 + C T SKCM 193336676 + 193336656 193336696 41 AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATCGTG AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATTGTG < 41bp 1 0.0438712991258159 1 0.0392166078090668 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336676 chr3:193336693 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_34983 0 0 1 0 2 OPA1 chr3:193336658 3'AG 193336658 Downstream 36bp
chr3 193336693 193336693 1 + C T SKCM 193336676 + 193336656 193336696 41 AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATCGTG AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATTGTG < 41bp 1 0.0438712991258159 1 0.0392166078090668 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336676 chr3:193336693 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_34983 0 0 1 0 2 OPA1 chr3:193336725 5'GT 193336725 Upstream 33bp
chr19 50912133 50912133 1 + C T SKCM 50912125 + 50912105 50912145 41 CCACAACCTGTGTTACACCACGCTCCTTCGGCCCGGGACTG CCACAACCTGTGTTACACCACGCTCCTTTGGCCCGGGACTG < 41bp 1 0.179037226049424 1 0.26110577583313 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912125 chr19:50912133 nonsynonymous SNV 0.091 2 29 hm5C_associated_SNPs_34984 0 0 1 0 2 POLD1 chr19:50912042 3'AG 50912042 Downstream 92bp
chr19 50912133 50912133 1 + C T SKCM 50912125 + 50912105 50912145 41 CCACAACCTGTGTTACACCACGCTCCTTCGGCCCGGGACTG CCACAACCTGTGTTACACCACGCTCCTTTGGCCCGGGACTG < 41bp 1 0.179037226049424 1 0.26110577583313 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912125 chr19:50912133 nonsynonymous SNV 0.091 2 29 hm5C_associated_SNPs_34984 0 0 1 0 2 POLD1 chr19:50912158 5'GT 50912158 Upstream 26bp
chr14 75746585 75746585 1 + C T SKCM 75746582 + 75746562 75746602 41 CCTTCTGTTTTGTTCTAGGACTTCTGCACGGACCTGGCCGT CCTTCTGTTTTGTTCTAGGACTTTTGCACGGACCTGGCCGT < 41bp 1 0.0904659611827078 1 0.0085122287273407 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746582 chr14:75746585 synonymous SNV . 0 24 hm5C_associated_SNPs_34985 0 0 1 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 6bp
chr14 75746585 75746585 1 + C T SKCM 75746590 + 75746570 75746610 41 TTTGTTCTAGGACTTCTGCACGGACCTGGCCGTCTCCAGTG TTTGTTCTAGGACTTTTGCACGGACCTGGCCGTCTCCAGTG < 41bp 1 0.489064224078705 1 0.484352827072144 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746590 chr14:75746585 synonymous SNV . 0 16 hm5C_associated_SNPs_34986 0 0 1 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 6bp
chr14 75746585 75746585 1 + C T SKCM 75746594 + 75746574 75746614 41 TTCTAGGACTTCTGCACGGACCTGGCCGTCTCCAGTGCCAA TTCTAGGACTTTTGCACGGACCTGGCCGTCTCCAGTGCCAA < 41bp 1 0.144719267823 1 0.0843986570835114 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746594 chr14:75746585 synonymous SNV . 0 12 hm5C_associated_SNPs_34987 0 0 1 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 6bp
chr14 75746585 75746585 1 + C T SKCM 75746595 + 75746575 75746615 41 TCTAGGACTTCTGCACGGACCTGGCCGTCTCCAGTGCCAAC TCTAGGACTTTTGCACGGACCTGGCCGTCTCCAGTGCCAAC < 41bp 1 0.466433824838491 1 0.0716502368450165 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746595 chr14:75746585 synonymous SNV . 0 11 hm5C_associated_SNPs_34988 0 0 1 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 6bp
chr14 75746585 75746585 1 + C T SKCM 75746599 + 75746579 75746619 41 GGACTTCTGCACGGACCTGGCCGTCTCCAGTGCCAACTTCA GGACTTTTGCACGGACCTGGCCGTCTCCAGTGCCAACTTCA < 41bp 1 0.054028439268148 1 0.0193266868591309 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746599 chr14:75746585 synonymous SNV . 0 7 hm5C_associated_SNPs_34989 0 0 1 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 6bp
chr14 75746585 75746585 1 + C T SKCM 75746600 + 75746580 75746620 41 GACTTCTGCACGGACCTGGCCGTCTCCAGTGCCAACTTCAT GACTTTTGCACGGACCTGGCCGTCTCCAGTGCCAACTTCAT < 41bp 1 0.0708962884345335 1 0.0511701703071594 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746600 chr14:75746585 synonymous SNV . 0 6 hm5C_associated_SNPs_34990 0 0 1 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 6bp
chr14 75746585 75746585 1 + C T SKCM 75746605 + 75746585 75746625 41 CTGCACGGACCTGGCCGTCTCCAGTGCCAACTTCATTCCCA TTGCACGGACCTGGCCGTCTCCAGTGCCAACTTCATTCCCA < 41bp 1 0.408854263076074 1 0.343775868415833 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746605 chr14:75746585 synonymous SNV . 0 1 hm5C_associated_SNPs_34991 0 0 1 0 1 FOS chr14:75746580 3'AG 75746580 Downstream 6bp
chr1 110172954 110172954 1 + C T SKCM 110172951 + 110172931 110172971 41 TCCTCAGCTATCACCGGAATCCGCTACCGGAGTACCTGTCC TCCTCAGCTATCACCGGAATCCGTTACCGGAGTACCTGTCC < 41bp 1 0.116147369020476 1 0.176055818796158 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110172951 chr1:110172954 synonymous SNV . 0 24 hm5C_associated_SNPs_34992 0 0 0 0 1 AMPD2 chr1:110172855 3'AG 110172855 Downstream 100bp
chr1 46070653 46070653 1 + C T SKCM 46070650 + 46070630 46070670 41 GCTAATGAGTGTGGAGAAGCCTTCTTTTTCTATGGGAAATC GCTAATGAGTGTGGAGAAGCCTTTTTTTTCTATGGGAAATC < 41bp 1 0.131992456763282 1 0.0375110805034637 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NASP ENSG00000132780 CDS Human protein_coding chr1:46070650 chr1:46070653 synonymous SNV . 0 24 hm5C_associated_SNPs_34996 0 0 1 0 2 NASP chr1:46070608 3'AG 46070608 Downstream 46bp
chr1 46070653 46070653 1 + C T SKCM 46070650 + 46070630 46070670 41 GCTAATGAGTGTGGAGAAGCCTTCTTTTTCTATGGGAAATC GCTAATGAGTGTGGAGAAGCCTTTTTTTTCTATGGGAAATC < 41bp 1 0.131992456763282 1 0.0375110805034637 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NASP ENSG00000132780 CDS Human protein_coding chr1:46070650 chr1:46070653 synonymous SNV . 0 24 hm5C_associated_SNPs_34996 0 0 1 0 2 NASP chr1:46070688 5'GT 46070688 Upstream 36bp
chr19 46509882 46509882 1 + G A SKCM 46509891 + 46509871 46509911 41 CGGAACCGCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCC CGGAACCGCAAAATGGGGGGCCGCCCAGGCTCCTTGGCCCC < 41bp 1 0.0798475749081885 1 0.102805644273758 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509891 chr19:46509882 synonymous SNV . 0 12 hm5C_associated_SNPs_34999 0 0 1 0 1 CCDC61 chr19:46509974 5'GT 46509974 Upstream 93bp
chr19 46509882 46509882 1 + G A SKCM 46509892 + 46509872 46509912 41 GGAACCGCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCCC GGAACCGCAAAATGGGGGGCCGCCCAGGCTCCTTGGCCCCC < 41bp 1 0.247111386587416 1 0.0730681717395782 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509892 chr19:46509882 synonymous SNV . 0 11 hm5C_associated_SNPs_35000 0 0 1 0 1 CCDC61 chr19:46509974 5'GT 46509974 Upstream 93bp
chr7 6631381 6631381 1 + C T SKCM 6631401 + 6631381 6631421 41 CAGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCT TAGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCT < 41bp 1 0.154569717838597 1 0.19147065281868 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631401 chr7:6631381 synonymous SNV . 0 1 hm5C_associated_SNPs_35001 0 0 1 0 1 C7orf26 chr7:6631334 3'AG 6631334 Downstream 48bp
chr19 40883707 40883707 1 + C T SKCM 40883722 + 40883702 40883742 41 GTGGTCCCCGCGGATGAGGCCCAGGCTCGAATCCCATATGC GTGGTTCCCGCGGATGAGGCCCAGGCTCGAATCCCATATGC < 41bp 1 0.485108675866191 1 0.35788506269455 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40883722 chr19:40883707 synonymous SNV . 0 6 hm5C_associated_SNPs_35002 0 0 1 0 2 PLD3 chr19:40883693 3'AG 40883693 Downstream 15bp
chr19 40883707 40883707 1 + C T SKCM 40883722 + 40883702 40883742 41 GTGGTCCCCGCGGATGAGGCCCAGGCTCGAATCCCATATGC GTGGTTCCCGCGGATGAGGCCCAGGCTCGAATCCCATATGC < 41bp 1 0.485108675866191 1 0.35788506269455 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40883722 chr19:40883707 synonymous SNV . 0 6 hm5C_associated_SNPs_35002 0 0 1 0 2 PLD3 chr19:40883792 5'GT 40883792 Upstream 86bp
chr19 40883707 40883707 1 + C T SKCM 40883723 + 40883703 40883743 41 TGGTCCCCGCGGATGAGGCCCAGGCTCGAATCCCATATGCC TGGTTCCCGCGGATGAGGCCCAGGCTCGAATCCCATATGCC < 41bp 1 0.33188790355235 1 0.48746532201767 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40883723 chr19:40883707 synonymous SNV . 0 5 hm5C_associated_SNPs_35003 0 0 1 0 2 PLD3 chr19:40883693 3'AG 40883693 Downstream 15bp
chr19 40883707 40883707 1 + C T SKCM 40883723 + 40883703 40883743 41 TGGTCCCCGCGGATGAGGCCCAGGCTCGAATCCCATATGCC TGGTTCCCGCGGATGAGGCCCAGGCTCGAATCCCATATGCC < 41bp 1 0.33188790355235 1 0.48746532201767 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40883723 chr19:40883707 synonymous SNV . 0 5 hm5C_associated_SNPs_35003 0 0 1 0 2 PLD3 chr19:40883792 5'GT 40883792 Upstream 86bp
chr22 35783096 35783096 1 + C T SKCM 35783079 + 35783059 35783099 41 ACCAAGTTCAAGCAGCTCTACCGCTCCCGCATGAACTCCCT ACCAAGTTCAAGCAGCTCTACCGCTCCCGCATGAACTTCCT < 41bp 1 0.144101662688718 1 0.112682223320007 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35783079 chr22:35783096 nonsynonymous SNV 0.990 3 38 hm5C_associated_SNPs_35004 0 0 1 0 1 HMOX1 chr22:35783169 5'GT 35783169 Upstream 74bp
chr12 56347546 56347546 1 + G T SKCM 56347561 + 56347541 56347581 41 TTCTTGAGCTAAGGGGGACACCCTTGGCCTCCAAGCCAGCC TTCTTTAGCTAAGGGGGACACCCTTGGCCTCCAAGCCAGCC < 41bp 1 0.235724130332258 1 0.057699054479599 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56347561 chr12:56347546 nonsynonymous SNV 0.567 1 6 hm5C_associated_SNPs_35005 0 0 1 0 1 DGKA chr12:56347469 3'AG 56347469 Downstream 78bp
chr19 42839511 42839511 1 + G A SKCM 42839497 + 42839477 42839517 41 CCTCGTCCTATACAACTTCTCCGCCAACACCTGGGAGTCTT CCTCGTCCTATACAACTTCTCCGCCAACACCTGGAAGTCTT < 41bp 1 0.0961372477937991 1 0.244496077299118 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42839497 chr19:42839511 nonsynonymous SNV 0.889 2 35 hm5C_associated_SNPs_35006 0 0 1 0 2 MEGF8 chr19:42839449 3'AG 42839449 Downstream 63bp
chr19 42839511 42839511 1 + G A SKCM 42839497 + 42839477 42839517 41 CCTCGTCCTATACAACTTCTCCGCCAACACCTGGGAGTCTT CCTCGTCCTATACAACTTCTCCGCCAACACCTGGAAGTCTT < 41bp 1 0.0961372477937991 1 0.244496077299118 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42839497 chr19:42839511 nonsynonymous SNV 0.889 2 35 hm5C_associated_SNPs_35006 0 0 1 0 2 MEGF8 chr19:42839537 5'GT 42839537 Upstream 27bp
chr2 233272996 233272996 1 + G A SKCM 233272995 + 233272975 233273015 41 AGGTGATCCTAGGTGGAGGCCGAAAGTACATGTTTCCCATG AGGTGATCCTAGGTGGAGGCCAAAAGTACATGTTTCCCATG < 41bp 1 0.599914394333754 1 0.221086144447327 experiment 0.800171211332493 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233272995 chr2:233272996 nonsynonymous SNV 0.066 4 22 hm5C_associated_SNPs_35007 0 0 0 0 1 ALPPL2 chr2:233272977 3'AG 233272977 Downstream 20bp
chr5 50058984 50058984 1 + G A SKCM 50059003 + 50058983 50059023 41 TGAACTATGATGGGGAACTGCACAAGCACCCACAACTGGAA TAAACTATGATGGGGAACTGCACAAGCACCCACAACTGGAA < 41bp 1 0.657474192362967 1 0.390415489673615 experiment 0.685051615274066 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PARP8 ENSG00000151883 CDS Human protein_coding chr5:50059003 chr5:50058984 synonymous SNV . 0 2 hm5C_associated_SNPs_35008 0 0 0 0 2 PARP8 chr5:50058982 3'AG 50058982 Downstream 3bp
chr5 50058984 50058984 1 + G A SKCM 50059003 + 50058983 50059023 41 TGAACTATGATGGGGAACTGCACAAGCACCCACAACTGGAA TAAACTATGATGGGGAACTGCACAAGCACCCACAACTGGAA < 41bp 1 0.657474192362967 1 0.390415489673615 experiment 0.685051615274066 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PARP8 ENSG00000151883 CDS Human protein_coding chr5:50059003 chr5:50058984 synonymous SNV . 0 2 hm5C_associated_SNPs_35008 0 0 0 0 2 PARP8 chr5:50059076 5'GT 50059076 Upstream 93bp
chr11 66812074 66812074 1 + C T SKCM 66812087 + 66812067 66812107 41 GCCGATGCTGTGGGGGAGATCCTGCTCTCCCTCAGCTACCT GCCGATGTTGTGGGGGAGATCCTGCTCTCCCTCAGCTACCT < 41bp 1 0.311224853260595 1 0.115586012601852 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SYT12 ENSG00000173227 CDS Human protein_coding chr11:66812087 chr11:66812074 nonsynonymous SNV 0.658 1 8 hm5C_associated_SNPs_35009 0 0 0 0 1 SYT12 chr11:66812064 3'AG 66812064 Downstream 11bp
chr7 99956333 99956333 1 + C T SKCM 99956353 + 99956333 99956373 41 CCAAGCTACCTTTATGGGGTCACTCAACCAAAACACCTCTC TCAAGCTACCTTTATGGGGTCACTCAACCAAAACACCTCTC < 41bp 1 0.0827443273527435 1 0.0324512422084808 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PILRB ENSG00000121716 CDS Human protein_coding chr7:99956353 chr7:99956333 nonsynonymous SNV 0.004 0 1 hm5C_associated_SNPs_35010 0 0 0 0 1 PILRB chr7:99956313 3'AG 99956313 Downstream 21bp
chr16 14970238 14970238 1 + C T SKCM 14970220 + 14970200 14970240 41 TTTCTTCCCCTCTTAGAAAGCTGCCCAGGGAAGCTGATCGA TTTCTTCCCCTCTTAGAAAGCTGCCCAGGGAAGCTGATTGA < 41bp 1 0.270446021872222 1 0.13329228758812 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14970220 chr16:14970238 synonymous SNV . 0 39 hm5C_associated_SNPs_35011 0 0 1 0 1 NOMO1 chr16:14970216 3'AG 14970216 Downstream 23bp
chr16 14970238 14970238 1 + C T SKCM 14970225 + 14970205 14970245 41 TCCCCTCTTAGAAAGCTGCCCAGGGAAGCTGATCGAGATCC TCCCCTCTTAGAAAGCTGCCCAGGGAAGCTGATTGAGATCC < 41bp 1 0.603480570225473 1 0.7672199010849 experiment 0.793038859549055 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14970225 chr16:14970238 synonymous SNV . 0 34 hm5C_associated_SNPs_35012 0 0 1 0 1 NOMO1 chr16:14970216 3'AG 14970216 Downstream 23bp
chr17 1747873 1747873 1 + T G SKCM 1747884 + 1747864 1747904 41 GTTTTCAGCTTTCATGTTGGCGACACAGTTGAACCCTCTCG GTTTTCAGCGTTCATGTTGGCGACACAGTTGAACCCTCTCG < 41bp 1 0.640939514908297 1 0.176349282264709 experiment 0.718120970183407 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPA1 ENSG00000132383 CDS Human protein_coding chr17:1747884 chr17:1747873 synonymous SNV . 0 10 hm5C_associated_SNPs_35013 0 0 1 0 1 RPA1 chr17:1747872 3'AG 1747872 Downstream 2bp
chr19 50753044 50753044 1 + C T SKCM 50753062 + 50753042 50753082 41 CTCGACCTGCAGCCCTGCATCGACCTCATCGAGCGGCCGGT CTTGACCTGCAGCCCTGCATCGACCTCATCGAGCGGCCGGT < 41bp 1 0.251821069396481 1 0.573439359664917 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50753062 chr19:50753044 synonymous SNV . 0 3 hm5C_associated_SNPs_35015 0 0 0 0 1 MYH14 chr19:50753080 5'GT 50753080 Upstream 37bp
chr17 4799490 4799490 1 + C T SKCM 4799505 + 4799485 4799525 41 CAGTCCTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCGA CAGTCTTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCGA < 41bp 1 0.108807876955003 1 0.114114433526993 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799505 chr17:4799490 synonymous SNV . 0 6 hm5C_associated_SNPs_35016 0 0 0 0 1 MINK1 chr17:4799488 3'AG 4799488 Downstream 3bp
chr17 4799490 4799490 1 + C T SKCM 4799508 + 4799488 4799528 41 TCCTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCGACCT TCTTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCGACCT < 41bp 1 0.176317766438624 1 0.314470291137695 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799508 chr17:4799490 synonymous SNV . 0 3 hm5C_associated_SNPs_35017 0 0 0 0 1 MINK1 chr17:4799488 3'AG 4799488 Downstream 3bp
chr11 65338939 65338939 1 + C T SKCM 65338926 + 65338906 65338946 41 CTGGCCTCAGCCTCAGAGCTCCCCCTGGGCTCTCGACCTGC CTGGCCTCAGCCTCAGAGCTCCCCCTGGGCTCTTGACCTGC < 41bp 1 0.268519570961555 1 0.0415893197059631 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SSSCA1 ENSG00000173465 CDS Human protein_coding chr11:65338926 chr11:65338939 stopgain 0.097 0 34 hm5C_associated_SNPs_35020 0 0 0 0 1 SSSCA1 chr11:65338862 3'AG 65338862 Downstream 78bp
chr6 32123528 32123528 1 + C T SKCM 32123537 + 32123517 32123557 41 TTCTTTCATCTCCCTCTCCTCTCCACAGATGGGACAGTATG TTCTTTCATCTTCCTCTCCTCTCCACAGATGGGACAGTATG < 41bp 1 0.633382160442263 1 0.934066534042358 experiment 0.733235679115474 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control PPT2 ENSG00000221988;ENSG00000258388 CDS Human other chr6:32123537 chr6:32123528 nonsynonymous SNV 0.997 1 12 hm5C_associated_SNPs_35021 0 0 1 1 2 PPT2 chr6:32123465 3'AG 32123465 Downstream 64bp
chr6 32123528 32123528 1 + C T SKCM 32123537 + 32123517 32123557 41 TTCTTTCATCTCCCTCTCCTCTCCACAGATGGGACAGTATG TTCTTTCATCTTCCTCTCCTCTCCACAGATGGGACAGTATG < 41bp 1 0.633382160442263 1 0.934066534042358 experiment 0.733235679115474 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control PPT2 ENSG00000221988;ENSG00000258388 CDS Human other chr6:32123537 chr6:32123528 nonsynonymous SNV 0.997 1 12 hm5C_associated_SNPs_35021 0 0 1 1 2 PPT2 chr6:32123560 5'GT 32123560 Upstream 33bp
chr3 33183916 33183916 1 + C T SKCM 33183934 + 33183914 33183954 41 CTCTTGGAACTGGAGGAGACCAGCTAGCCCACAGCAACCAA CTTTTGGAACTGGAGGAGACCAGCTAGCCCACAGCAACCAA < 41bp 1 0.468231158448168 1 0.128020584583282 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CRTAP ENSG00000170275 CDS Human protein_coding chr3:33183934 chr3:33183916 synonymous SNV . 0 3 hm5C_associated_SNPs_35022 0 0 1 0 1 CRTAP chr3:33183887 3'AG 33183887 Downstream 30bp
chr3 47041780 47041780 1 + C T SKCM 47041773 + 47041753 47041793 41 TCCTTCGCCACTGGATGGGCCGCGGCCCTTTCCTGCTGCTC TCCTTCGCCACTGGATGGGCCGCGGCCTTTTCCTGCTGCTC < 41bp 1 0.346132209248652 1 0.356560587882996 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041773 chr3:47041780 synonymous SNV . 0 28 hm5C_associated_SNPs_35023 0 0 1 0 1 NBEAL2 chr3:47041686 3'AG 47041686 Downstream 95bp
chrX 57405199 57405199 1 + G A SKCM 57405181 + 57405161 57405201 41 CGTTATGCTGAAGACCTGGCCCCCATGTTGAAGGTCATGGC CGTTATGCTGAAGACCTGGCCCCCATGTTGAAGGTCATAGC < 41bp 1 0.495273160334196 1 0.164447844028473 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57405181 chrX:57405199 nonsynonymous SNV 0.982 0 39 hm5C_associated_SNPs_35024 0 0 0 0 1 FAAH2 chrX:57405219 5'GT 57405219 Upstream 21bp
chr14 100934380 100934380 1 + G A SKCM 100934368 + 100934348 100934388 41 TTGCCTGCAGGTATGGAACGCCGTGGACTCCGGGCACTGCC TTGCCTGCAGGTATGGAACGCCGTGGACTCCGAGCACTGCC < 41bp 1 0.216205649626246 1 0.701315462589264 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR25 ENSG00000176473 CDS Human protein_coding chr14:100934368 chr14:100934380 nonsynonymous SNV 0.094 3 33 hm5C_associated_SNPs_35025 0 0 0 0 1 WDR25 chr14:100934358 3'AG 100934358 Downstream 23bp
chr15 43668794 43668794 1 + C T SKCM 43668796 + 43668776 43668816 41 TCTGTTTTGCAGCCTTATCGCCAAGCACTGCTTGATTTGGA TCTGTTTTGCAGCCTTATTGCCAAGCACTGCTTGATTTGGA < 41bp 1 0.256310217606827 1 0.576678991317749 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43668796 chr15:43668794 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_35026 0 0 1 0 1 TUBGCP4 chr15:43668823 5'GT 43668823 Upstream 30bp
chr11 65824782 65824782 1 + C T SKCM 65824781 + 65824761 65824801 41 GCCCCACTCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCC GCCCCACTCCTACAGTTTTGCTCATGGGAGCCCCTGTTCCC < 41bp 1 0.65480140015583 1 0.0873859822750092 experiment 0.69039719968834 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824781 chr11:65824782 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_35027 0 0 1 0 2 SF3B2 chr11:65824737 3'AG 65824737 Downstream 46bp
chr11 65824782 65824782 1 + C T SKCM 65824781 + 65824761 65824801 41 GCCCCACTCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCC GCCCCACTCCTACAGTTTTGCTCATGGGAGCCCCTGTTCCC < 41bp 1 0.65480140015583 1 0.0873859822750092 experiment 0.69039719968834 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824781 chr11:65824782 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_35027 0 0 1 0 2 SF3B2 chr11:65824846 5'GT 65824846 Upstream 65bp
chr5 176016570 176016570 1 + C T SKCM 176016578 + 176016558 176016598 41 GCGGCTGCAGTTCTCCACACCGAAGGAGGAGGTGGGCGCCA GCGGCTGCAGTTTTCCACACCGAAGGAGGAGGTGGGCGCCA < 41bp 1 0.526123881121516 1 0.832670450210571 experiment 0.947752237756967 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176016578 chr5:176016570 synonymous SNV . 0 13 hm5C_associated_SNPs_35028 0 0 0 0 2 CDHR2 chr5:176016529 3'AG 176016529 Downstream 42bp
chr5 176016570 176016570 1 + C T SKCM 176016578 + 176016558 176016598 41 GCGGCTGCAGTTCTCCACACCGAAGGAGGAGGTGGGCGCCA GCGGCTGCAGTTTTCCACACCGAAGGAGGAGGTGGGCGCCA < 41bp 1 0.526123881121516 1 0.832670450210571 experiment 0.947752237756967 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176016578 chr5:176016570 synonymous SNV . 0 13 hm5C_associated_SNPs_35028 0 0 0 0 2 CDHR2 chr5:176016617 5'GT 176016617 Upstream 48bp
chr18 13056630 13056630 1 + T A SKCM 13056650 + 13056630 13056670 41 TCCTGTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCAT ACCTGTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCAT < 41bp 1 0.118954213832498 1 0.297754287719727 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056650 chr18:13056630 nonsynonymous SNV 0.037 0 1 hm5C_associated_SNPs_35029 0 0 1 0 1 CEP192 chr18:13056697 5'GT 13056697 Upstream 68bp
chr1 109806907 109806907 1 + C G SKCM 109806891 + 109806871 109806911 41 AGAGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCA AGAGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTGTGCA < 41bp 1 0.0389997861100306 1 0.0759551227092743 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806891 chr1:109806907 nonsynonymous SNV 0.793 1 37 hm5C_associated_SNPs_35030 0 0 1 0 1 CELSR2 chr1:109806987 5'GT 109806987 Upstream 81bp
chr1 109806907 109806907 1 + C G SKCM 109806892 + 109806872 109806912 41 GAGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCAC GAGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTGTGCAC < 41bp 1 0.1708418894714 1 0.428240358829498 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806892 chr1:109806907 nonsynonymous SNV 0.793 1 36 hm5C_associated_SNPs_35031 0 0 1 0 1 CELSR2 chr1:109806987 5'GT 109806987 Upstream 81bp
chr1 109806907 109806907 1 + C G SKCM 109806893 + 109806873 109806913 41 AGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCACC AGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTGTGCACC < 41bp 1 0.222947974995634 1 0.238129705190659 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806893 chr1:109806907 nonsynonymous SNV 0.793 1 35 hm5C_associated_SNPs_35032 0 0 1 0 1 CELSR2 chr1:109806987 5'GT 109806987 Upstream 81bp
chr1 109806907 109806907 1 + C G SKCM 109806894 + 109806874 109806914 41 GCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCACCT GCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTGTGCACCT < 41bp 1 0.135525698585975 1 0.42741721868515 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806894 chr1:109806907 nonsynonymous SNV 0.793 1 34 hm5C_associated_SNPs_35033 0 0 1 0 1 CELSR2 chr1:109806987 5'GT 109806987 Upstream 81bp
chr1 109806907 109806907 1 + C G SKCM 109806895 + 109806875 109806915 41 CAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCACCTG CAGAGGGCAACCTGGGCCCCCGGCTGCATGGTGTGCACCTG < 41bp 1 0.26656008670213 1 0.502279460430145 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806895 chr1:109806907 nonsynonymous SNV 0.793 1 33 hm5C_associated_SNPs_35034 0 0 1 0 1 CELSR2 chr1:109806987 5'GT 109806987 Upstream 81bp
chr8 77619807 77619807 1 + C T SKCM 77619825 + 77619805 77619845 41 TCCGGCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCC TCTGGCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCC < 41bp 1 0.246495634067456 1 0.598444283008575 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77619825 chr8:77619807 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_35035 0 0 1 0 1 ZFHX4 chr8:77619781 3'AG 77619781 Downstream 27bp
chr7 45688334 45688334 1 + G A SKCM 45688321 + 45688301 45688341 41 GGACTGCTACTACTGCGTGTCGGGCCTCACCCAGCCCAAGA GGACTGCTACTACTGCGTGTCGGGCCTCACCCAACCCAAGA < 41bp 1 0.422023472361054 1 0.814473390579224 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45688321 chr7:45688334 synonymous SNV . 0 34 hm5C_associated_SNPs_35036 0 0 0 0 2 ADCY1 chr7:45688269 3'AG 45688269 Downstream 66bp
chr7 45688334 45688334 1 + G A SKCM 45688321 + 45688301 45688341 41 GGACTGCTACTACTGCGTGTCGGGCCTCACCCAGCCCAAGA GGACTGCTACTACTGCGTGTCGGGCCTCACCCAACCCAAGA < 41bp 1 0.422023472361054 1 0.814473390579224 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45688321 chr7:45688334 synonymous SNV . 0 34 hm5C_associated_SNPs_35036 0 0 0 0 2 ADCY1 chr7:45688396 5'GT 45688396 Upstream 63bp
chr18 12718630 12718630 1 + C T SKCM 12718624 + 12718604 12718644 41 CATATCAGCGTAATGATCTGCAGCTTCGTAGGTATGTTTCT CATATCAGCGTAATGATCTGCAGCTTTGTAGGTATGTTTCT < 41bp 1 0.473384554977033 1 0.285904586315155 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMG2 ENSG00000128789 CDS Human protein_coding chr18:12718624 chr18:12718630 nonsynonymous SNV 0.943 0 27 hm5C_associated_SNPs_35038 0 0 1 0 1 PSMG2 chr18:12718634 5'GT 12718634 Upstream 5bp
chr11 74329644 74329644 1 + C T SKCM 74329626 + 74329606 74329646 41 TGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCA TGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTTTCA < 41bp 1 0.662644062033491 1 0.248652756214142 experiment 0.674711875933018 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329626 chr11:74329644 nonsynonymous SNV 0.987 0 39 hm5C_associated_SNPs_35039 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 63bp
chr11 74329644 74329644 1 + C T SKCM 74329633 + 74329613 74329653 41 CCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCAAAAAGTT CCTAGAGCTCCTGCTGAATCCTCTTCGTCTTTCAAAAAGTT < 41bp 1 0.153809337144241 1 0.0938304960727692 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329633 chr11:74329644 nonsynonymous SNV 0.987 0 32 hm5C_associated_SNPs_35040 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 63bp
chr11 74329644 74329644 1 + C T SKCM 74329645 + 74329625 74329665 41 GCTGAATCCTCTTCGTCTTCCAAAAAGTTTGAGCAGTCACA GCTGAATCCTCTTCGTCTTTCAAAAAGTTTGAGCAGTCACA < 41bp 1 0.520514959890076 1 0.415853947401047 experiment 0.958970080219849 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329645 chr11:74329644 nonsynonymous SNV 0.987 0 20 hm5C_associated_SNPs_35041 0 0 1 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 63bp
chr11 65780821 65780821 1 + C T SKCM 65780832 + 65780812 65780852 41 CTTGTGGTTCCCTGGCAGAACTCCTCTCAGCTCCTAAAGCA CTTGTGGTTTCCTGGCAGAACTCCTCTCAGCTCCTAAAGCA < 41bp 1 0.43381602587393 1 0.318683505058289 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CST6 ENSG00000175315 CDS Human protein_coding chr11:65780832 chr11:65780821 nonsynonymous SNV 0.298 4 10 hm5C_associated_SNPs_35042 0 0 0 0 1 CST6 chr11:65780788 3'AG 65780788 Downstream 34bp
chr11 70275245 70275245 1 + G A SKCM 70275262 + 70275242 70275282 41 GGAGAGAGCCCAGCGGATGGCCAAGGAGCGGCAGGAGCAGG GGAAAGAGCCCAGCGGATGGCCAAGGAGCGGCAGGAGCAGG < 41bp 1 0.42407747689841 1 0.368834108114243 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70275262 chr11:70275245 synonymous SNV . 0 4 hm5C_associated_SNPs_35043 0 0 1 0 2 CTTN chr11:70275157 3'AG 70275157 Downstream 89bp
chr11 70275245 70275245 1 + G A SKCM 70275262 + 70275242 70275282 41 GGAGAGAGCCCAGCGGATGGCCAAGGAGCGGCAGGAGCAGG GGAAAGAGCCCAGCGGATGGCCAAGGAGCGGCAGGAGCAGG < 41bp 1 0.42407747689841 1 0.368834108114243 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70275262 chr11:70275245 synonymous SNV . 0 4 hm5C_associated_SNPs_35043 0 0 1 0 2 CTTN chr11:70275305 5'GT 70275305 Upstream 61bp
chr11 70275245 70275245 1 + G A SKCM 70275263 + 70275243 70275283 41 GAGAGAGCCCAGCGGATGGCCAAGGAGCGGCAGGAGCAGGA GAAAGAGCCCAGCGGATGGCCAAGGAGCGGCAGGAGCAGGA < 41bp 1 0.796185864682861 1 0.851010203361511 experiment 0.407628270634278 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70275263 chr11:70275245 synonymous SNV . 0 3 hm5C_associated_SNPs_35044 0 0 1 0 2 CTTN chr11:70275157 3'AG 70275157 Downstream 89bp
chr11 70275245 70275245 1 + G A SKCM 70275263 + 70275243 70275283 41 GAGAGAGCCCAGCGGATGGCCAAGGAGCGGCAGGAGCAGGA GAAAGAGCCCAGCGGATGGCCAAGGAGCGGCAGGAGCAGGA < 41bp 1 0.796185864682861 1 0.851010203361511 experiment 0.407628270634278 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70275263 chr11:70275245 synonymous SNV . 0 3 hm5C_associated_SNPs_35044 0 0 1 0 2 CTTN chr11:70275305 5'GT 70275305 Upstream 61bp
chr16 2286835 2286835 1 + T A SKCM 2286855 + 2286835 2286875 41 TCTGCTGGCCGCACTCTGGGCGCTGGAAGCCGCCGGGACCG ACTGCTGGCCGCACTCTGGGCGCTGGAAGCCGCCGGGACCG < 41bp 1 0.664766812349333 1 0.436602830886841 experiment 0.670466375301333 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNASE1L2 ENSG00000167968 CDS Human lincRNA chr16:2286855 chr16:2286835 synonymous SNV . 0 1 hm5C_associated_SNPs_35048 0 0 0 0 2 DNASE1L2 chr16:2286779 3'AG 2286779 Downstream 57bp
chr16 2286835 2286835 1 + T A SKCM 2286855 + 2286835 2286875 41 TCTGCTGGCCGCACTCTGGGCGCTGGAAGCCGCCGGGACCG ACTGCTGGCCGCACTCTGGGCGCTGGAAGCCGCCGGGACCG < 41bp 1 0.664766812349333 1 0.436602830886841 experiment 0.670466375301333 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNASE1L2 ENSG00000167968 CDS Human lincRNA chr16:2286855 chr16:2286835 synonymous SNV . 0 1 hm5C_associated_SNPs_35048 0 0 0 0 2 DNASE1L2 chr16:2286802 3'AG 2286802 Downstream 34bp
chr17 48757161 48757161 1 + G A SKCM 48757176 + 48757156 48757196 41 CAGGTGACATTTGCTCTGAACTGGATGATACGAATGATGTC CAGGTAACATTTGCTCTGAACTGGATGATACGAATGATGTC < 41bp 1 0.569609538482301 1 0.417320221662521 experiment 0.860780923035398 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48757176 chr17:48757161 synonymous SNV . 0 6 hm5C_associated_SNPs_35049 0 0 0 0 2 ABCC3 chr17:48757159 3'AG 48757159 Downstream 3bp
chr17 48757161 48757161 1 + G A SKCM 48757176 + 48757156 48757196 41 CAGGTGACATTTGCTCTGAACTGGATGATACGAATGATGTC CAGGTAACATTTGCTCTGAACTGGATGATACGAATGATGTC < 41bp 1 0.569609538482301 1 0.417320221662521 experiment 0.860780923035398 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48757176 chr17:48757161 synonymous SNV . 0 6 hm5C_associated_SNPs_35049 0 0 0 0 2 ABCC3 chr17:48757260 5'GT 48757260 Upstream 100bp
chr6 118015232 118015232 1 + G A SKCM 118015223 + 118015203 118015243 41 GCCATTTGGCAGTGAAGGTGCTGTCTCCGGAAGATGGAAAA GCCATTTGGCAGTGAAGGTGCTGTCTCCGAAAGATGGAAAA < 41bp 1 0.199371336455239 1 0.147792220115662 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUS1 ENSG00000153989 CDS Human protein_coding chr6:118015223 chr6:118015232 nonsynonymous SNV 0.992 4 30 hm5C_associated_SNPs_35050 0 0 0 0 1 NUS1 chr6:118015194 3'AG 118015194 Downstream 39bp
chr17 1648489 1648489 1 + G A SKCM 1648475 + 1648455 1648495 41 CCCTTTCTCCACAGTTCTCCCCTGTGAGCGCCATGGAGCCC CCCTTTCTCCACAGTTCTCCCCTGTGAGCGCCATAGAGCCC < 41bp 1 0.120824881281477 1 0.0561139285564423 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1648475 chr17:1648489 nonsynonymous SNV 0.029 1 35 hm5C_associated_SNPs_35054 0 0 1 0 2 SERPINF2 chr17:1648469 3'AG 1648469 Downstream 21bp
chr17 1648489 1648489 1 + G A SKCM 1648475 + 1648455 1648495 41 CCCTTTCTCCACAGTTCTCCCCTGTGAGCGCCATGGAGCCC CCCTTTCTCCACAGTTCTCCCCTGTGAGCGCCATAGAGCCC < 41bp 1 0.120824881281477 1 0.0561139285564423 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1648475 chr17:1648489 nonsynonymous SNV 0.029 1 35 hm5C_associated_SNPs_35054 0 0 1 0 2 SERPINF2 chr17:1648507 5'GT 1648507 Upstream 19bp
chr19 42848898 42848898 1 + C T SKCM 42848907 + 42848887 42848927 41 TTCGTCACGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT TTCGTCACGTCTCTGGAGGCCTGCGTCACCCAGAGCTTCCT < 41bp 1 0.271886264999266 1 0.303104251623154 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42848907 chr19:42848898 synonymous SNV . 0 12 hm5C_associated_SNPs_35059 0 0 1 0 2 MEGF8 chr19:42848822 3'AG 42848822 Downstream 77bp
chr19 42848898 42848898 1 + C T SKCM 42848907 + 42848887 42848927 41 TTCGTCACGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT TTCGTCACGTCTCTGGAGGCCTGCGTCACCCAGAGCTTCCT < 41bp 1 0.271886264999266 1 0.303104251623154 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42848907 chr19:42848898 synonymous SNV . 0 12 hm5C_associated_SNPs_35059 0 0 1 0 2 MEGF8 chr19:42848985 5'GT 42848985 Upstream 88bp
chr5 141353267 141353267 1 + C T SKCM 141353260 + 141353240 141353280 41 GTCTGTCCAAGGTGGAGAAACCAGGATCTATTTGGATTTGC GTCTGTCCAAGGTGGAGAAACCAGGATTTATTTGGATTTGC < 41bp 1 0.545820345902935 1 0.109068363904953 experiment 0.908359308194129 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF14 ENSG00000013561 CDS Human protein_coding chr5:141353260 chr5:141353267 synonymous SNV . 0 28 hm5C_associated_SNPs_35066 0 0 1 0 1 RNF14 chr5:141353307 5'GT 141353307 Upstream 41bp
chr6 44107307 44107307 1 + G A SKCM 44107298 + 44107278 44107318 41 TGCTGGTGGTTGTGGGCGTCCTCTCCGTAGGCATCGTGCTG TGCTGGTGGTTGTGGGCGTCCTCTCCGTAAGCATCGTGCTG < 41bp 1 0.346268613215924 1 0.156663924455643 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44107298 chr6:44107307 nonsynonymous SNV 0.998 1 30 hm5C_associated_SNPs_35067 0 0 1 0 1 TMEM63B chr6:44107346 5'GT 44107346 Upstream 40bp
chr1 25679448 25679448 1 + G A SKCM 25679441 + 25679421 25679461 41 TGATTGCATCTATGTGGATTCTTTTTGGAGGTTATGTTGCT TGATTGCATCTATGTGGATTCTTTTTGAAGGTTATGTTGCT < 41bp 1 0.0807212106978821 1 0.0228175520896912 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25679441 chr1:25679448 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_35069 0 0 1 0 2 TMEM50A chr1:25679373 3'AG 25679373 Downstream 76bp
chr1 25679448 25679448 1 + G A SKCM 25679441 + 25679421 25679461 41 TGATTGCATCTATGTGGATTCTTTTTGGAGGTTATGTTGCT TGATTGCATCTATGTGGATTCTTTTTGAAGGTTATGTTGCT < 41bp 1 0.0807212106978821 1 0.0228175520896912 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25679441 chr1:25679448 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_35069 0 0 1 0 2 TMEM50A chr1:25679465 5'GT 25679465 Upstream 18bp
chr11 130013310 130013310 1 + C T SKCM 130013308 + 130013288 130013328 41 AGAACCATGGCTATGAGAACCCCACCTACAAATACCTGGAG AGAACCATGGCTATGAGAACCCTACCTACAAATACCTGGAG < 41bp 1 0.0508060069822396 1 0.518036723136902 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130013308 chr11:130013310 synonymous SNV . 0 23 hm5C_associated_SNPs_35070 0 0 1 0 1 APLP2 chr11:130013242 3'AG 130013242 Downstream 69bp
chr12 49663387 49663387 1 + C T SKCM 49663396 + 49663376 49663416 41 AGGAGATGATTCCTTCAACACCTTCTTCAGTGAAACGGGTG AGGAGATGATTTCTTCAACACCTTCTTCAGTGAAACGGGTG < 41bp 1 0.0368109467171888 1 0.0350474119186401 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TUBA1C ENSG00000167553 CDS Human protein_coding chr12:49663396 chr12:49663387 nonsynonymous SNV 0.997 3 12 hm5C_associated_SNPs_35071 0 0 1 0 1 TUBA1C chr12:49663470 5'GT 49663470 Upstream 84bp
chr12 51844702 51844702 1 + G A SKCM 51844686 + 51844666 51844706 41 GAACTCTGTATGTGGGAGTTCGGATGCCGCTTGGCCGGCAG GAACTCTGTATGTGGGAGTTCGGATGCCGCTTGGCCAGCAG < 41bp 1 0.573632873184659 1 0.752200245857239 experiment 0.852734253630682 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A8 ENSG00000050438 CDS Human protein_coding chr12:51844686 chr12:51844702 nonsynonymous SNV 0.997 2 37 hm5C_associated_SNPs_35072 0 0 0 0 1 SLC4A8 chr12:51844660 3'AG 51844660 Downstream 43bp
chr17 7490757 7490757 1 + C T SKCM 7490756 + 7490736 7490776 41 GCAACCAGGAAACCGGAGATCCCCTGATGGCTGGGACCTTT GCAACCAGGAAACCGGAGATCTCCTGATGGCTGGGACCTTT < 41bp 1 0.625533618983062 1 0.206520408391953 experiment 0.748932762033875 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MPDU1 ENSG00000129255 CDS Human protein_coding chr17:7490756 chr17:7490757 nonsynonymous SNV 0.987 1 22 hm5C_associated_SNPs_35075 0 0 1 0 1 MPDU1 chr17:7490744 3'AG 7490744 Downstream 14bp
chr1 233482327 233482327 1 + G A SKCM 233482335 + 233482315 233482355 41 GGCCCCCGAAGTGATCAAGTCTTCCTTGTTTTCTAAGGGAA GGCCCCCGAAGTAATCAAGTCTTCCTTGTTTTCTAAGGGAA < 41bp 1 0.113359890762031 1 0.0777270197868347 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233482335 chr1:233482327 synonymous SNV . 0 13 hm5C_associated_SNPs_35078 0 0 1 0 1 MAP3K21 chr1:233482368 5'GT 233482368 Upstream 42bp
chr15 48626681 48626681 1 + C T SKCM 48626680 + 48626660 48626700 41 ACGGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAG ACGGACATTCAGATAGCGCTCTCTTCTGGGTGTTATGGAAG < 41bp 1 0.26023148278378 1 0.0589902997016907 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DUT ENSG00000128951 CDS Human protein_coding chr15:48626680 chr15:48626681 nonsynonymous SNV 0.981 4 22 hm5C_associated_SNPs_35079 0 0 1 0 2 DUT chr15:48626614 3'AG 48626614 Downstream 68bp
chr15 48626681 48626681 1 + C T SKCM 48626680 + 48626660 48626700 41 ACGGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAG ACGGACATTCAGATAGCGCTCTCTTCTGGGTGTTATGGAAG < 41bp 1 0.26023148278378 1 0.0589902997016907 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DUT ENSG00000128951 CDS Human protein_coding chr15:48626680 chr15:48626681 nonsynonymous SNV 0.981 4 22 hm5C_associated_SNPs_35079 0 0 1 0 2 DUT chr15:48626705 5'GT 48626705 Upstream 25bp
chr15 48626681 48626681 1 + C T SKCM 48626682 + 48626662 48626702 41 GGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAG GGACATTCAGATAGCGCTCTCTTCTGGGTGTTATGGAAGAG < 41bp 1 0.259332555761963 1 0.0674889981746674 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DUT ENSG00000128951 CDS Human protein_coding chr15:48626682 chr15:48626681 nonsynonymous SNV 0.981 4 20 hm5C_associated_SNPs_35080 0 0 1 0 2 DUT chr15:48626614 3'AG 48626614 Downstream 68bp
chr15 48626681 48626681 1 + C T SKCM 48626682 + 48626662 48626702 41 GGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAG GGACATTCAGATAGCGCTCTCTTCTGGGTGTTATGGAAGAG < 41bp 1 0.259332555761963 1 0.0674889981746674 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DUT ENSG00000128951 CDS Human protein_coding chr15:48626682 chr15:48626681 nonsynonymous SNV 0.981 4 20 hm5C_associated_SNPs_35080 0 0 1 0 2 DUT chr15:48626705 5'GT 48626705 Upstream 25bp
chr15 48626681 48626681 1 + C T SKCM 48626685 + 48626665 48626705 41 CATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAGTGG CATTCAGATAGCGCTCTCTTCTGGGTGTTATGGAAGAGTGG < 41bp 1 0.778269277510526 1 0.794447898864746 experiment 0.443461444978948 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DUT ENSG00000128951 CDS Human protein_coding chr15:48626685 chr15:48626681 nonsynonymous SNV 0.981 4 17 hm5C_associated_SNPs_35081 0 0 1 0 2 DUT chr15:48626614 3'AG 48626614 Downstream 68bp
chr15 48626681 48626681 1 + C T SKCM 48626685 + 48626665 48626705 41 CATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAGTGG CATTCAGATAGCGCTCTCTTCTGGGTGTTATGGAAGAGTGG < 41bp 1 0.778269277510526 1 0.794447898864746 experiment 0.443461444978948 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DUT ENSG00000128951 CDS Human protein_coding chr15:48626685 chr15:48626681 nonsynonymous SNV 0.981 4 17 hm5C_associated_SNPs_35081 0 0 1 0 2 DUT chr15:48626705 5'GT 48626705 Upstream 25bp
chr2 183622485 183622485 1 + G A SKCM 183622482 + 183622462 183622502 41 AGTATCATTCTTTTTGTGCCCAGGAAAACGTTCAAAGATAC AGTATCATTCTTTTTGTGCCCAGAAAAACGTTCAAAGATAC < 41bp 1 0.650346700256144 1 0.589644432067871 experiment 0.699306599487712 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183622482 chr2:183622485 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_35082 0 0 1 0 2 DNAJC10 chr2:183622419 3'AG 183622419 Downstream 67bp
chr2 183622485 183622485 1 + G A SKCM 183622482 + 183622462 183622502 41 AGTATCATTCTTTTTGTGCCCAGGAAAACGTTCAAAGATAC AGTATCATTCTTTTTGTGCCCAGAAAAACGTTCAAAGATAC < 41bp 1 0.650346700256144 1 0.589644432067871 experiment 0.699306599487712 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183622482 chr2:183622485 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_35082 0 0 1 0 2 DNAJC10 chr2:183622552 5'GT 183622552 Upstream 68bp
chr7 127228564 127228564 1 + C T SKCM 127228572 + 127228552 127228592 41 CATGGGCCTCACCGTGTCCGCGCTCTTTTCGCGGATCTTCG CATGGGCCTCACTGTGTCCGCGCTCTTTTCGCGGATCTTCG < 41bp 1 0.267138058597112 1 0.0915883183479309 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARF5 ENSG00000004059 CDS Human protein_coding chr7:127228572 chr7:127228564 synonymous SNV . 0 13 hm5C_associated_SNPs_35083 0 0 1 0 1 ARF5 chr7:127228619 5'GT 127228619 Upstream 56bp
chr7 127228564 127228564 1 + C T SKCM 127228574 + 127228554 127228594 41 TGGGCCTCACCGTGTCCGCGCTCTTTTCGCGGATCTTCGGG TGGGCCTCACTGTGTCCGCGCTCTTTTCGCGGATCTTCGGG < 41bp 1 0.32980675185684 1 0.136837095022202 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARF5 ENSG00000004059 CDS Human protein_coding chr7:127228574 chr7:127228564 synonymous SNV . 0 11 hm5C_associated_SNPs_35084 0 0 1 0 1 ARF5 chr7:127228619 5'GT 127228619 Upstream 56bp
chr7 127228564 127228564 1 + C T SKCM 127228576 + 127228556 127228596 41 GGCCTCACCGTGTCCGCGCTCTTTTCGCGGATCTTCGGGAA GGCCTCACTGTGTCCGCGCTCTTTTCGCGGATCTTCGGGAA < 41bp 1 0.358493178401112 1 0.154471457004547 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARF5 ENSG00000004059 CDS Human protein_coding chr7:127228576 chr7:127228564 synonymous SNV . 0 9 hm5C_associated_SNPs_35085 0 0 1 0 1 ARF5 chr7:127228619 5'GT 127228619 Upstream 56bp
chr7 2613102 2613102 1 + G A SKCM 2613101 + 2613081 2613121 41 GAAAAAGAAGATATGTATGACGAGATTATTGAGTTAAAGAA GAAAAAGAAGATATGTATGACAAGATTATTGAGTTAAAGAA < 41bp 1 0.435731531563687 1 0.380600273609161 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IQCE ENSG00000106012 CDS Human protein_coding chr7:2613101 chr7:2613102 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_35086 0 0 1 0 2 IQCE chr7:2613052 3'AG 2613052 Downstream 51bp
chr7 2613102 2613102 1 + G A SKCM 2613101 + 2613081 2613121 41 GAAAAAGAAGATATGTATGACGAGATTATTGAGTTAAAGAA GAAAAAGAAGATATGTATGACAAGATTATTGAGTTAAAGAA < 41bp 1 0.435731531563687 1 0.380600273609161 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IQCE ENSG00000106012 CDS Human protein_coding chr7:2613101 chr7:2613102 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_35086 0 0 1 0 2 IQCE chr7:2613122 5'GT 2613122 Upstream 21bp
chr16 90028531 90028531 1 + C T SKCM 90028519 + 90028499 90028539 41 TGTTCAGCTACGTGGAGGAGCTGGTGGAGATTCGCGTGAGG TGTTCAGCTACGTGGAGGAGCTGGTGGAGATTTGCGTGAGG < 41bp 1 0.642370071917948 1 0.323983609676361 experiment 0.715259856164104 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028519 chr16:90028531 nonsynonymous SNV 0.995 4 33 hm5C_associated_SNPs_35087 0 0 1 0 1 DEF8 chr16:90028533 5'GT 90028533 Upstream 3bp
chr7 100777090 100777090 1 + C T SKCM 100777083 + 100777063 100777103 41 CTTATGAAAAAGAGGTGCCTCTCTCTGCCCTCACCAACATT CTTATGAAAAAGAGGTGCCTCTCTCTGTCCTCACCAACATT < 41bp 1 0.120991816781819 1 0.0999838709831238 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100777083 chr7:100777090 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_35089 0 0 1 0 1 SERPINE1 chr7:100777174 5'GT 100777174 Upstream 85bp
chr7 100777090 100777090 1 + C T SKCM 100777087 + 100777067 100777107 41 TGAAAAAGAGGTGCCTCTCTCTGCCCTCACCAACATTCTGA TGAAAAAGAGGTGCCTCTCTCTGTCCTCACCAACATTCTGA < 41bp 1 0.287931107404178 1 0.307365030050278 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100777087 chr7:100777090 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_35090 0 0 1 0 1 SERPINE1 chr7:100777174 5'GT 100777174 Upstream 85bp
chr11 48152033 48152033 1 + C T SKCM 48152020 + 48152000 48152040 41 TCTTTGCATAGCCCCTGTTCCAGTTTCTGACTTCCGAGTGA TCTTTGCATAGCCCCTGTTCCAGTTTCTGACTTTCGAGTGA < 41bp 1 0.119570907490813 1 0.18213763833046 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48152020 chr11:48152033 synonymous SNV . 0 34 hm5C_associated_SNPs_35095 0 0 0 0 1 PTPRJ chr11:48152011 3'AG 48152011 Downstream 23bp
chr6 138202176 138202176 1 + C T SKCM 138202184 + 138202164 138202204 41 CCACTCAGAGATCGAGCCAGCGCAGAGATGTGCCTCGAACC CCACTCAGAGATTGAGCCAGCGCAGAGATGTGCCTCGAACC < 41bp 1 0.365176399898178 1 0.319567143917084 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TNFAIP3 ENSG00000118503 CDS Human protein_coding chr6:138202184 chr6:138202176 nonsynonymous SNV 0.975 0 13 hm5C_associated_SNPs_35096 0 0 1 0 1 TNFAIP3 chr6:138202172 3'AG 138202172 Downstream 5bp
chr2 74438352 74438352 1 + C T SKCM 74438349 + 74438329 74438369 41 ATGCCACTGTTACAATATCTCATCGATATACTCCCAAAGAG ATGCCACTGTTACAATATCTCATTGATATACTCCCAAAGAG < 41bp 1 0.230158166367017 1 0.346586912870407 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTHFD2 ENSG00000065911 CDS Human protein_coding chr2:74438349 chr2:74438352 stopgain 0.998 1 24 hm5C_associated_SNPs_35097 0 0 1 0 2 MTHFD2 chr2:74438326 3'AG 74438326 Downstream 27bp
chr2 74438352 74438352 1 + C T SKCM 74438349 + 74438329 74438369 41 ATGCCACTGTTACAATATCTCATCGATATACTCCCAAAGAG ATGCCACTGTTACAATATCTCATTGATATACTCCCAAAGAG < 41bp 1 0.230158166367017 1 0.346586912870407 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTHFD2 ENSG00000065911 CDS Human protein_coding chr2:74438349 chr2:74438352 stopgain 0.998 1 24 hm5C_associated_SNPs_35097 0 0 1 0 2 MTHFD2 chr2:74438418 5'GT 74438418 Upstream 67bp
chr2 47221620 47221620 1 + C T SKCM 47221605 + 47221585 47221625 41 CATGGGCAAGGAGGAGAGTTCTTTCGCCACTCAGGCCCTGC CATGGGCAAGGAGGAGAGTTCTTTCGCCACTCAGGTCCTGC < 41bp 1 0.0646103040026117 1 0.0183766782283783 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47221605 chr2:47221620 nonsynonymous SNV 0.805 0 36 hm5C_associated_SNPs_35098 0 0 1 0 1 TTC7A chr2:47221653 5'GT 47221653 Upstream 34bp
chr2 15770985 15770985 1 + C T SKCM 15770972 + 15770952 15770992 41 GGCTGCCCTTGAAAAGGAGGCGCAGACATCTTTCCTGCATC GGCTGCCCTTGAAAAGGAGGCGCAGACATCTTTTCTGCATC < 41bp 1 0.534724266093747 1 0.233651667833328 experiment 0.930551467812506 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX1 ENSG00000079785 CDS Human protein_coding chr2:15770972 chr2:15770985 synonymous SNV . 0 34 hm5C_associated_SNPs_35099 0 0 1 0 1 DDX1 chr2:15770900 3'AG 15770900 Downstream 86bp
chr2 15770985 15770985 1 + C T SKCM 15770974 + 15770954 15770994 41 CTGCCCTTGAAAAGGAGGCGCAGACATCTTTCCTGCATCTT CTGCCCTTGAAAAGGAGGCGCAGACATCTTTTCTGCATCTT < 41bp 1 0.225910380344006 1 0.434975147247314 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX1 ENSG00000079785 CDS Human protein_coding chr2:15770974 chr2:15770985 synonymous SNV . 0 32 hm5C_associated_SNPs_35100 0 0 1 0 1 DDX1 chr2:15770900 3'AG 15770900 Downstream 86bp
chr19 14580207 14580207 1 + C T SKCM 14580202 + 14580182 14580222 41 CAGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTC CAGTGACCAGTGCGGGACACCCCTTTCTGGTGAACCTCTTC < 41bp 1 0.0618734381048598 1 0.0742099285125732 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580202 chr19:14580207 synonymous SNV . 0 26 hm5C_associated_SNPs_35101 0 0 1 0 1 PKN1 chr19:14580153 3'AG 14580153 Downstream 55bp
chr19 14580207 14580207 1 + C T SKCM 14580203 + 14580183 14580223 41 AGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCG AGTGACCAGTGCGGGACACCCCTTTCTGGTGAACCTCTTCG < 41bp 1 0.0295476054855985 1 0.033863365650177 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580203 chr19:14580207 synonymous SNV . 0 25 hm5C_associated_SNPs_35102 0 0 1 0 1 PKN1 chr19:14580153 3'AG 14580153 Downstream 55bp
chr16 19460909 19460909 1 + G A SKCM 19460903 + 19460883 19460923 41 TGAAAGTGGTCCTGTCCATGCTTATGGAAACCCACCATTGT TGAAAGTGGTCCTGTCCATGCTTATGAAAACCCACCATTGT < 41bp 1 0.140911080303715 1 0.113678753376007 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMC5 ENSG00000103534 CDS Human protein_coding chr16:19460903 chr16:19460909 nonsynonymous SNV 0.008 0 27 hm5C_associated_SNPs_35104 0 0 0 0 2 TMC5 chr16:19460864 3'AG 19460864 Downstream 46bp
chr16 19460909 19460909 1 + G A SKCM 19460903 + 19460883 19460923 41 TGAAAGTGGTCCTGTCCATGCTTATGGAAACCCACCATTGT TGAAAGTGGTCCTGTCCATGCTTATGAAAACCCACCATTGT < 41bp 1 0.140911080303715 1 0.113678753376007 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMC5 ENSG00000103534 CDS Human protein_coding chr16:19460903 chr16:19460909 nonsynonymous SNV 0.008 0 27 hm5C_associated_SNPs_35104 0 0 0 0 2 TMC5 chr16:19460953 5'GT 19460953 Upstream 45bp
chr11 2608822 2608822 1 + C T SKCM 2608838 + 2608818 2608858 41 GCTGCCGAGAACCCCGACTCCTCCACCTGGAAGATCTACAT GCTGTCGAGAACCCCGACTCCTCCACCTGGAAGATCTACAT < 41bp 1 0.601175606658349 1 0.919647097587585 experiment 0.797648786683303 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2608838 chr11:2608822 nonsynonymous SNV 0.767 2 5 hm5C_associated_SNPs_35105 0 0 0 0 1 KCNQ1 chr11:2608800 3'AG 2608800 Downstream 23bp
chr15 76630250 76630250 1 + G A SKCM 76630260 + 76630240 76630280 41 GTACCTGGACGAGACGTGCACGTGCTTCGTGAGAGACGGGA GTACCTGGACAAGACGTGCACGTGCTTCGTGAGAGACGGGA < 41bp 1 0.289568883530362 1 0.365214228630066 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ISL2 ENSG00000159556 CDS Human protein_coding chr15:76630260 chr15:76630250 nonsynonymous SNV 0.999 5 11 hm5C_associated_SNPs_35106 0 0 1 0 1 ISL2 chr15:76630308 5'GT 76630308 Upstream 59bp
chr7 101960916 101960916 1 + G A SKCM 101960919 + 101960899 101960939 41 CCCACTGGAGTCAGGGGGCTCGGCCGACATCACCCTTCGCA CCCACTGGAGTCAGGGGACTCGGCCGACATCACCCTTCGCA < 41bp 1 0.579027359807273 1 0.856052398681641 experiment 0.841945280385453 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SH2B2 ENSG00000160999 CDS Human protein_coding chr7:101960919 chr7:101960916 nonsynonymous SNV 0.710 3 18 hm5C_associated_SNPs_35108 0 0 0 0 1 SH2B2 chr7:101960969 5'GT 101960969 Upstream 54bp
chr19 1036119 1036119 1 + C T SKCM 1036125 + 1036105 1036145 41 TCCCGGCCCCTTTCCCTCACCCAGGCCAAGACTAAGGGGCT TCCCGGCCCCTTTCTCTCACCCAGGCCAAGACTAAGGGGCT < 41bp 1 0.30148998535007 1 0.680326461791992 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1036125 chr19:1036119 synonymous SNV . 0 15 hm5C_associated_SNPs_35109 0 0 1 0 1 CNN2 chr19:1036066 3'AG 1036066 Downstream 54bp
chr7 142458470 142458470 1 + C T SKCM 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTTCC < 41bp 1 0.397035036937022 1 0.269160687923431 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458470 synonymous SNV . 0 39 hm5C_associated_SNPs_35110 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 65bp
chr7 142458470 142458470 1 + C T SKCM 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTTCC < 41bp 1 0.397035036937022 1 0.269160687923431 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458470 synonymous SNV . 0 39 hm5C_associated_SNPs_35110 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 96bp
chr7 142458470 142458470 1 + C T SKCM 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTTCCCTACCAGGTGTCCC < 41bp 1 0.212970427742207 1 0.227168291807175 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458470 synonymous SNV . 0 25 hm5C_associated_SNPs_35111 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 65bp
chr7 142458470 142458470 1 + C T SKCM 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTTCCCTACCAGGTGTCCC < 41bp 1 0.212970427742207 1 0.227168291807175 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458470 synonymous SNV . 0 25 hm5C_associated_SNPs_35111 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 96bp
chr7 142458470 142458470 1 + C T SKCM 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTTCCCTACCAGGTGTCCCTGAAT < 41bp 1 0.141031207613642 1 0.255501240491867 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458470 synonymous SNV . 0 20 hm5C_associated_SNPs_35112 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 65bp
chr7 142458470 142458470 1 + C T SKCM 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTTCCCTACCAGGTGTCCCTGAAT < 41bp 1 0.141031207613642 1 0.255501240491867 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458470 synonymous SNV . 0 20 hm5C_associated_SNPs_35112 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 96bp
chr7 142458470 142458470 1 + C T SKCM 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTTCCCTACCAGGTGTCCCTGAATT < 41bp 1 0.014830894059246 1 0.0522643029689789 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458470 synonymous SNV . 0 19 hm5C_associated_SNPs_35113 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 65bp
chr7 142458470 142458470 1 + C T SKCM 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTTCCCTACCAGGTGTCCCTGAATT < 41bp 1 0.014830894059246 1 0.0522643029689789 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458470 synonymous SNV . 0 19 hm5C_associated_SNPs_35113 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 96bp
chr7 142458470 142458470 1 + C T SKCM 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTTCCCTACCAGGTGTCCCTGAATTC < 41bp 1 0.209090104636313 1 0.0655053853988647 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458470 synonymous SNV . 0 18 hm5C_associated_SNPs_35114 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 65bp
chr7 142458470 142458470 1 + C T SKCM 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTTCCCTACCAGGTGTCCCTGAATTC < 41bp 1 0.209090104636313 1 0.0655053853988647 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458470 synonymous SNV . 0 18 hm5C_associated_SNPs_35114 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 96bp
chr7 142458470 142458470 1 + C T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTTCCCTACCAGGTGTCCCTGAATTCTGG < 41bp 1 0.20167038722341 1 0.564801871776581 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458470 synonymous SNV . 0 15 hm5C_associated_SNPs_35115 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 65bp
chr7 142458470 142458470 1 + C T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTTCCCTACCAGGTGTCCCTGAATTCTGG < 41bp 1 0.20167038722341 1 0.564801871776581 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458470 synonymous SNV . 0 15 hm5C_associated_SNPs_35115 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 96bp
chr7 142458470 142458470 1 + C T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTTCCCTACCAGGTGTCCCTGAATTCTGGC < 41bp 1 0.613327966262197 1 0.78506338596344 experiment 0.773344067475606 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458470 synonymous SNV . 0 14 hm5C_associated_SNPs_35116 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 65bp
chr7 142458470 142458470 1 + C T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTTCCCTACCAGGTGTCCCTGAATTCTGGC < 41bp 1 0.613327966262197 1 0.78506338596344 experiment 0.773344067475606 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458470 synonymous SNV . 0 14 hm5C_associated_SNPs_35116 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 96bp
chr7 142458470 142458470 1 + C T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTTCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT < 41bp 1 0.0936878957692548 1 0.0482909083366394 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458470 synonymous SNV . 0 7 hm5C_associated_SNPs_35117 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 65bp
chr7 142458470 142458470 1 + C T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTTCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT < 41bp 1 0.0936878957692548 1 0.0482909083366394 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458470 synonymous SNV . 0 7 hm5C_associated_SNPs_35117 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 96bp
chr7 142458470 142458470 1 + C T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTTCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT < 41bp 1 0.307024501975642 1 0.0516335070133209 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458470 synonymous SNV . 0 6 hm5C_associated_SNPs_35118 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 65bp
chr7 142458470 142458470 1 + C T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTTCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT < 41bp 1 0.307024501975642 1 0.0516335070133209 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458470 synonymous SNV . 0 6 hm5C_associated_SNPs_35118 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 96bp
chr7 142458470 142458470 1 + C T SKCM 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTTCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC < 41bp 1 0.703421786790543 1 0.558414399623871 experiment 0.593156426418915 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458470 synonymous SNV . 0 5 hm5C_associated_SNPs_35119 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 65bp
chr7 142458470 142458470 1 + C T SKCM 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTTCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC < 41bp 1 0.703421786790543 1 0.558414399623871 experiment 0.593156426418915 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458470 synonymous SNV . 0 5 hm5C_associated_SNPs_35119 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 96bp
chr6 107102665 107102665 1 + C T SKCM 107102660 + 107102640 107102680 41 GTCTCTTTGGTCCAAAGCTGCTGACCTCTTTGAGTCTGAGG GTCTCTTTGGTCCAAAGCTGCTGACTTCTTTGAGTCTGAGG < 41bp 1 0.270648913111303 1 0.139635473489761 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QRSL1 ENSG00000130348 CDS Human protein_coding chr6:107102660 chr6:107102665 nonsynonymous SNV 0.998 1 26 hm5C_associated_SNPs_35121 0 0 0 0 1 QRSL1 chr6:107102605 3'AG 107102605 Downstream 61bp
chr2 101598822 101598822 1 + C T SKCM 101598827 + 101598807 101598847 41 CAGCTCTGCCTGGTCCAGGACTCCAACGTCCAGGTGATCCC CAGCTCTGCCTGGTCTAGGACTCCAACGTCCAGGTGATCCC < 41bp 1 0.721533796860567 1 0.971371293067932 experiment 0.556932406278866 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101598827 chr2:101598822 stopgain 1.000 1 16 hm5C_associated_SNPs_35122 0 0 1 0 1 NPAS2 chr2:101598839 5'GT 101598839 Upstream 18bp
chr7 91714867 91714867 1 + C T SKCM 91714852 + 91714832 91714872 41 TGAAGGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATA TGAAGGCATGCAGGTGCTTTCTCTCACTGAGTCTCTCTATA < 41bp 1 0.211676071880755 1 0.0527969896793365 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714852 chr7:91714867 nonsynonymous SNV 0.393 0 36 hm5C_associated_SNPs_35123 0 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 59bp
chr7 91714867 91714867 1 + C T SKCM 91714856 + 91714836 91714876 41 GGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATAGTGA GGCATGCAGGTGCTTTCTCTCACTGAGTCTCTCTATAGTGA < 41bp 1 0.427052195037797 1 0.225132912397385 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714856 chr7:91714867 nonsynonymous SNV 0.393 0 32 hm5C_associated_SNPs_35124 0 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 59bp
chr7 91714867 91714867 1 + C T SKCM 91714864 + 91714844 91714884 41 GGTGCTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGG GGTGCTTTCTCTCACTGAGTCTCTCTATAGTGATGGAGAGG < 41bp 1 0.097063919993324 1 0.202914148569107 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714864 chr7:91714867 nonsynonymous SNV 0.393 0 24 hm5C_associated_SNPs_35125 0 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 59bp
chr7 91714867 91714867 1 + C T SKCM 91714868 + 91714848 91714888 41 CTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGGACCA CTTTCTCTCACTGAGTCTCTCTATAGTGATGGAGAGGACCA < 41bp 1 0.292040347001237 1 0.382630735635757 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714868 chr7:91714867 nonsynonymous SNV 0.393 0 20 hm5C_associated_SNPs_35126 0 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 59bp
chr17 6920628 6920628 1 + C T SKCM 6920637 + 6920617 6920657 41 GATCCTCCTCTCCTCTCCTGCTGAGCCTTCCACCTCTGACC GATCCTCCTCTTCTCTCCTGCTGAGCCTTCCACCTCTGACC < 41bp 1 0.458112273345424 1 0.210938632488251 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control C17orf49 ENSG00000161939;ENSG00000258315 CDS Human other chr17:6920637 chr17:6920628 synonymous SNV . 0 12 hm5C_associated_SNPs_35127 0 0 1 2 2 C17orf49 chr17:6920576 3'AG 6920576 Downstream 53bp
chr17 6920628 6920628 1 + C T SKCM 6920637 + 6920617 6920657 41 GATCCTCCTCTCCTCTCCTGCTGAGCCTTCCACCTCTGACC GATCCTCCTCTTCTCTCCTGCTGAGCCTTCCACCTCTGACC < 41bp 1 0.458112273345424 1 0.210938632488251 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control C17orf49 ENSG00000161939;ENSG00000258315 CDS Human other chr17:6920637 chr17:6920628 synonymous SNV . 0 12 hm5C_associated_SNPs_35127 0 0 1 2 2 C17orf49 chr17:6920580 3'AG 6920580 Downstream 49bp
chr12 69651668 69651668 1 + C T SKCM 69651667 + 69651647 69651687 41 GGCCAGCAGGACCAGGAGGGCCACCCCCACCTTTTCCAGGT GGCCAGCAGGACCAGGAGGGCTACCCCCACCTTTTCCAGGT < 41bp 1 0.354202429574833 1 0.209392428398132 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CPSF6 ENSG00000111605 CDS Human protein_coding chr12:69651667 chr12:69651668 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_35128 0 0 1 0 1 CPSF6 chr12:69651685 5'GT 69651685 Upstream 18bp
chr7 101960915 101960915 1 + G A SKCM 101960919 + 101960899 101960939 41 CCCACTGGAGTCAGGGGGCTCGGCCGACATCACCCTTCGCA CCCACTGGAGTCAGGGAGCTCGGCCGACATCACCCTTCGCA < 41bp 1 0.536592165711115 1 0.710935473442078 experiment 0.926815668577769 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SH2B2 ENSG00000160999 CDS Human protein_coding chr7:101960919 chr7:101960915 nonsynonymous SNV 0.846 3 17 hm5C_associated_SNPs_35129 0 0 0 0 1 SH2B2 chr7:101960969 5'GT 101960969 Upstream 55bp
chr19 50906833 50906833 1 + C T SKCM 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CGTACCTCATTTCTCGGGCCCAGACCCTCAAGGTGAGGGCT < 41bp 1 0.078237191910981 1 0.197129189968109 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906833 synonymous SNV . 0 11 hm5C_associated_SNPs_35130 0 0 1 0 2 POLD1 chr19:50906750 3'AG 50906750 Downstream 84bp
chr19 50906833 50906833 1 + C T SKCM 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CGTACCTCATTTCTCGGGCCCAGACCCTCAAGGTGAGGGCT < 41bp 1 0.078237191910981 1 0.197129189968109 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906833 synonymous SNV . 0 11 hm5C_associated_SNPs_35130 0 0 1 0 2 POLD1 chr19:50906854 5'GT 50906854 Upstream 22bp
chr19 50906833 50906833 1 + C T SKCM 50906851 + 50906831 50906871 41 ATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCTGGGCAGGT ATTTCTCGGGCCCAGACCCTCAAGGTGAGGGCTGGGCAGGT < 41bp 1 0.700757904528739 1 0.888521373271942 experiment 0.598484190942522 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906851 chr19:50906833 synonymous SNV . 0 3 hm5C_associated_SNPs_35131 0 0 1 0 2 POLD1 chr19:50906750 3'AG 50906750 Downstream 84bp
chr19 50906833 50906833 1 + C T SKCM 50906851 + 50906831 50906871 41 ATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCTGGGCAGGT ATTTCTCGGGCCCAGACCCTCAAGGTGAGGGCTGGGCAGGT < 41bp 1 0.700757904528739 1 0.888521373271942 experiment 0.598484190942522 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906851 chr19:50906833 synonymous SNV . 0 3 hm5C_associated_SNPs_35131 0 0 1 0 2 POLD1 chr19:50906854 5'GT 50906854 Upstream 22bp
chr3 178947158 178947158 1 + G A SKCM 178947150 + 178947130 178947170 41 ACTATTATGCAAATTCAGTGCAAAGGCGGCTTGAAAGGTGC ACTATTATGCAAATTCAGTGCAAAGGCGACTTGAAAGGTGC < 41bp 1 0.444707284571477 1 0.331183910369873 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178947150 chr3:178947158 nonsynonymous SNV 0.979 4 29 hm5C_associated_SNPs_35132 0 0 0 0 2 PIK3CA chr3:178947060 3'AG 178947060 Downstream 99bp
chr3 178947158 178947158 1 + G A SKCM 178947150 + 178947130 178947170 41 ACTATTATGCAAATTCAGTGCAAAGGCGGCTTGAAAGGTGC ACTATTATGCAAATTCAGTGCAAAGGCGACTTGAAAGGTGC < 41bp 1 0.444707284571477 1 0.331183910369873 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178947150 chr3:178947158 nonsynonymous SNV 0.979 4 29 hm5C_associated_SNPs_35132 0 0 0 0 2 PIK3CA chr3:178947230 5'GT 178947230 Upstream 73bp
chr5 147585614 147585614 1 + G A SKCM 147585619 + 147585599 147585639 41 GTGTCTTCAGTCAGGGAGGACAGGTCAGTGCCTATTTTTAT GTGTCTTCAGTCAGGAAGGACAGGTCAGTGCCTATTTTTAT < 41bp 1 0.578263817564988 1 0.356299817562103 experiment 0.843472364870025 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPINK6 ENSG00000178172 CDS Human protein_coding chr5:147585619 chr5:147585614 nonsynonymous SNV 0.834 1 16 hm5C_associated_SNPs_35133 0 0 0 0 2 SPINK6 chr5:147585599 3'AG 147585599 Downstream 16bp
chr5 147585614 147585614 1 + G A SKCM 147585619 + 147585599 147585639 41 GTGTCTTCAGTCAGGGAGGACAGGTCAGTGCCTATTTTTAT GTGTCTTCAGTCAGGAAGGACAGGTCAGTGCCTATTTTTAT < 41bp 1 0.578263817564988 1 0.356299817562103 experiment 0.843472364870025 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPINK6 ENSG00000178172 CDS Human protein_coding chr5:147585619 chr5:147585614 nonsynonymous SNV 0.834 1 16 hm5C_associated_SNPs_35133 0 0 0 0 2 SPINK6 chr5:147585621 5'GT 147585621 Upstream 8bp
chr1 22835087 22835087 1 + T C SKCM 22835072 + 22835052 22835092 41 TGGTTCAGGTGGTTTCAATTCTCTGATATCAGCAGTTCTAG TGGTTCAGGTGGTTTCAATTCTCTGATATCAGCAGCTCTAG < 41bp 1 0.501215285675547 1 0.737247288227081 experiment 0.997569428648906 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22835072 chr1:22835087 nonsynonymous SNV 0.998 0 36 hm5C_associated_SNPs_35135 0 0 1 0 1 ZBTB40 chr1:22835023 3'AG 22835023 Downstream 65bp
chr2 54845318 54845318 1 + T C SKCM 54845324 + 54845304 54845344 41 GCCTCACTAAACTGTTGGACCCCGAAGGTAGGGACTCAAGG GCCTCACTAAACTGCTGGACCCCGAAGGTAGGGACTCAAGG < 41bp 1 0.289048580415258 1 0.108641266822815 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54845324 chr2:54845318 synonymous SNV . 0 15 hm5C_associated_SNPs_35142 0 0 1 0 1 SPTBN1 chr2:54845330 5'GT 54845330 Upstream 13bp
chr2 54845318 54845318 1 + T C SKCM 54845325 + 54845305 54845345 41 CCTCACTAAACTGTTGGACCCCGAAGGTAGGGACTCAAGGG CCTCACTAAACTGCTGGACCCCGAAGGTAGGGACTCAAGGG < 41bp 1 0.285666142491531 1 0.220187783241272 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54845325 chr2:54845318 synonymous SNV . 0 14 hm5C_associated_SNPs_35143 0 0 1 0 1 SPTBN1 chr2:54845330 5'GT 54845330 Upstream 13bp
chr2 54845318 54845318 1 + T C SKCM 54845326 + 54845306 54845346 41 CTCACTAAACTGTTGGACCCCGAAGGTAGGGACTCAAGGGA CTCACTAAACTGCTGGACCCCGAAGGTAGGGACTCAAGGGA < 41bp 1 0.320198572166899 1 0.758610248565674 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54845326 chr2:54845318 synonymous SNV . 0 13 hm5C_associated_SNPs_35144 0 0 1 0 1 SPTBN1 chr2:54845330 5'GT 54845330 Upstream 13bp
chr7 142459713 142459713 1 + C T SKCM 142459693 + 142459673 142459713 41 GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACT < 41bp 1 0.524586088819209 1 0.0456717610359192 experiment 0.950827822361582 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459693 chr7:142459713 nonsynonymous SNV 0.015 3 41 hm5C_associated_SNPs_35146 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 89bp
chr7 142459713 142459713 1 + C T SKCM 142459696 + 142459676 142459716 41 TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACTCCC < 41bp 1 0.338557781257247 1 0.352238684892654 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459696 chr7:142459713 nonsynonymous SNV 0.015 3 38 hm5C_associated_SNPs_35147 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 89bp
chr7 142459713 142459713 1 + C T SKCM 142459703 + 142459683 142459723 41 TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGA TTCATCAATGCAGCCAAGATCATCCGCCACTCCCAATACGA < 41bp 1 0.276697361724713 1 0.180778592824936 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459703 chr7:142459713 nonsynonymous SNV 0.015 3 31 hm5C_associated_SNPs_35148 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 89bp
chr7 142459713 142459713 1 + C T SKCM 142459706 + 142459686 142459726 41 ATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAG ATCAATGCAGCCAAGATCATCCGCCACTCCCAATACGACAG < 41bp 1 0.275382125976517 1 0.231544643640518 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459706 chr7:142459713 nonsynonymous SNV 0.015 3 28 hm5C_associated_SNPs_35149 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 89bp
chr7 142459713 142459713 1 + C T SKCM 142459709 + 142459689 142459729 41 AATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA AATGCAGCCAAGATCATCCGCCACTCCCAATACGACAGGAA < 41bp 1 0.139146540476783 1 0.0627893209457397 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459709 chr7:142459713 nonsynonymous SNV 0.015 3 25 hm5C_associated_SNPs_35150 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 89bp
chr7 142459713 142459713 1 + C T SKCM 142459710 + 142459690 142459730 41 ATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG ATGCAGCCAAGATCATCCGCCACTCCCAATACGACAGGAAG < 41bp 1 0.0957930705074763 1 0.232266634702682 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459710 chr7:142459713 nonsynonymous SNV 0.015 3 24 hm5C_associated_SNPs_35151 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 89bp
chr7 142459713 142459713 1 + C T SKCM 142459712 + 142459692 142459732 41 GCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC GCAGCCAAGATCATCCGCCACTCCCAATACGACAGGAAGAC < 41bp 1 0.300221793700304 1 0.254563629627228 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459712 chr7:142459713 nonsynonymous SNV 0.015 3 22 hm5C_associated_SNPs_35152 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 89bp
chr7 142459713 142459713 1 + C T SKCM 142459714 + 142459694 142459734 41 AGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC AGCCAAGATCATCCGCCACTCCCAATACGACAGGAAGACTC < 41bp 1 0.548862336954482 1 0.178159445524216 experiment 0.902275326091036 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459714 chr7:142459713 nonsynonymous SNV 0.015 3 20 hm5C_associated_SNPs_35153 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 89bp
chr7 142459713 142459713 1 + C T SKCM 142459715 + 142459695 142459735 41 GCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCT GCCAAGATCATCCGCCACTCCCAATACGACAGGAAGACTCT < 41bp 1 0.238306207294057 1 0.229555696249008 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459715 chr7:142459713 nonsynonymous SNV 0.015 3 19 hm5C_associated_SNPs_35154 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 89bp
chr7 142459713 142459713 1 + C T SKCM 142459716 + 142459696 142459736 41 CCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCTG CCAAGATCATCCGCCACTCCCAATACGACAGGAAGACTCTG < 41bp 1 0.532160160786156 1 0.0602854192256927 experiment 0.935679678427689 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459716 chr7:142459713 nonsynonymous SNV 0.015 3 18 hm5C_associated_SNPs_35155 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 89bp
chr7 142459713 142459713 1 + C T SKCM 142459732 + 142459712 142459752 41 CCCCCAATACGACAGGAAGACTCTGAACAATGACATCATGT CTCCCAATACGACAGGAAGACTCTGAACAATGACATCATGT < 41bp 1 0.488951137540677 1 0.269100666046143 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459732 chr7:142459713 nonsynonymous SNV 0.015 3 2 hm5C_associated_SNPs_35156 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 89bp
chr12 132546845 132546845 1 + C T SKCM 132546853 + 132546833 132546873 41 CCCCGGCACGGTCTTTGGTGCCCCAAGTGTCCCAAGGTAAA CCCCGGCACGGTTTTTGGTGCCCCAAGTGTCCCAAGGTAAA < 41bp 1 0.122433521395014 1 0.0963898897171021 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546853 chr12:132546845 nonsynonymous SNV 0.614 5 13 hm5C_associated_SNPs_35157 0 0 1 0 1 EP400 chr12:132546868 5'GT 132546868 Upstream 24bp
chr19 12924217 12924217 1 + C T SKCM 12924210 + 12924190 12924230 41 CTACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTT CTACTTCCTCAATGAAGGGTCCCAAGCTCGTCCCCGTTCTT < 41bp 1 0.322105692593551 1 0.0826056897640228 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924210 chr19:12924217 synonymous SNV . 0 28 hm5C_associated_SNPs_35158 0 0 1 0 1 RNASEH2A chr19:12924142 3'AG 12924142 Downstream 76bp
chr19 12924217 12924217 1 + C T SKCM 12924211 + 12924191 12924231 41 TACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTTC TACTTCCTCAATGAAGGGTCCCAAGCTCGTCCCCGTTCTTC < 41bp 1 0.135028641269365 1 0.0377197265625 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924211 chr19:12924217 synonymous SNV . 0 27 hm5C_associated_SNPs_35159 0 0 1 0 1 RNASEH2A chr19:12924142 3'AG 12924142 Downstream 76bp
chr19 12924217 12924217 1 + C T SKCM 12924232 + 12924212 12924252 41 CAAGCCCGTCCCCGTTCTTCCCACCGATATTTCCTGGAACG CAAGCTCGTCCCCGTTCTTCCCACCGATATTTCCTGGAACG < 41bp 1 0.166333506100408 1 0.0951819717884064 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924232 chr19:12924217 synonymous SNV . 0 6 hm5C_associated_SNPs_35160 0 0 1 0 1 RNASEH2A chr19:12924142 3'AG 12924142 Downstream 76bp
chr19 12924218 12924218 1 + C T SKCM 12924210 + 12924190 12924230 41 CTACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTT CTACTTCCTCAATGAAGGGTCCCAAGCCTGTCCCCGTTCTT < 41bp 1 0.321175424484864 1 0.0702271163463593 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924210 chr19:12924218 nonsynonymous SNV 0.002 1 29 hm5C_associated_SNPs_35161 0 0 1 0 1 RNASEH2A chr19:12924142 3'AG 12924142 Downstream 77bp
chr19 12924218 12924218 1 + C T SKCM 12924211 + 12924191 12924231 41 TACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTTC TACTTCCTCAATGAAGGGTCCCAAGCCTGTCCCCGTTCTTC < 41bp 1 0.0980488581060191 1 0.0597066879272461 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924211 chr19:12924218 nonsynonymous SNV 0.002 1 28 hm5C_associated_SNPs_35162 0 0 1 0 1 RNASEH2A chr19:12924142 3'AG 12924142 Downstream 77bp
chr19 12924218 12924218 1 + C T SKCM 12924232 + 12924212 12924252 41 CAAGCCCGTCCCCGTTCTTCCCACCGATATTTCCTGGAACG CAAGCCTGTCCCCGTTCTTCCCACCGATATTTCCTGGAACG < 41bp 1 0.145706753870154 1 0.0981582701206207 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924232 chr19:12924218 nonsynonymous SNV 0.002 1 7 hm5C_associated_SNPs_35163 0 0 1 0 1 RNASEH2A chr19:12924142 3'AG 12924142 Downstream 77bp
chr16 1550438 1550438 1 + C T SKCM 1550440 + 1550420 1550460 41 CACGTCAGCAAGGCTGTCCTCATCTGCCTGGCGCAACTCGG CACGTCAGCAAGGCTGTCTTCATCTGCCTGGCGCAACTCGG < 41bp 1 0.308625637103377 1 0.0632083117961884 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1550440 chr16:1550438 nonsynonymous SNV 0.164 4 19 hm5C_associated_SNPs_35164 0 0 1 0 2 TELO2 chr16:1550348 3'AG 1550348 Downstream 91bp
chr16 1550438 1550438 1 + C T SKCM 1550440 + 1550420 1550460 41 CACGTCAGCAAGGCTGTCCTCATCTGCCTGGCGCAACTCGG CACGTCAGCAAGGCTGTCTTCATCTGCCTGGCGCAACTCGG < 41bp 1 0.308625637103377 1 0.0632083117961884 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1550440 chr16:1550438 nonsynonymous SNV 0.164 4 19 hm5C_associated_SNPs_35164 0 0 1 0 2 TELO2 chr16:1550489 5'GT 1550489 Upstream 52bp
chr6 31594924 31594924 1 + C T SKCM 31594939 + 31594919 31594959 41 CTACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC CTACCTCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC < 41bp 1 0.300570782291602 1 0.119478106498718 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594939 chr6:31594924 synonymous SNV . 0 6 hm5C_associated_SNPs_35165 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 52bp
chr6 31594924 31594924 1 + C T SKCM 31594940 + 31594920 31594960 41 TACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC TACCTCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC < 41bp 1 0.284828456763857 1 0.156838983297348 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594940 chr6:31594924 synonymous SNV . 0 5 hm5C_associated_SNPs_35166 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 52bp
chr6 31594924 31594924 1 + C T SKCM 31594941 + 31594921 31594961 41 ACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC ACCTCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC < 41bp 1 0.337706823282104 1 0.16583713889122 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594941 chr6:31594924 synonymous SNV . 0 4 hm5C_associated_SNPs_35167 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 52bp
chr6 31594924 31594924 1 + C T SKCM 31594942 + 31594922 31594962 41 CCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCC CCTCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCC < 41bp 1 0.587103631491606 1 0.537136375904083 experiment 0.825792737016788 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594942 chr6:31594924 synonymous SNV . 0 3 hm5C_associated_SNPs_35168 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 52bp
chr4 79173594 79173594 1 + C T SKCM 79173606 + 79173586 79173626 41 CTTGCAATCATGGGGAAGTCCGATGTACCCCCCAACCATGC CTTGCAATTATGGGGAAGTCCGATGTACCCCCCAACCATGC < 41bp 1 0.197916737551106 1 0.541032135486603 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79173606 chr4:79173594 nonsynonymous SNV 0.043 0 9 hm5C_associated_SNPs_35169 0 0 1 0 1 FRAS1 chr4:79173546 3'AG 79173546 Downstream 49bp
chr7 154738110 154738110 1 - C T SKCM 154738116 - 154738096 154738136 41 GATGTTCACAATGCAGAGTTCGTTCTGACTGGAGTGCTCAC GATGTTCACAATGCAGAGTTCGTTCTAACTGGAGTGCTCAC < 41bp 1 0.0546614663399854 1 0.0356373190879822 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAXIP1 ENSG00000157212 CDS Human protein_coding chr7:154738116 chr7:154738110 synonymous SNV . 0 27 hm5C_associated_SNPs_35170 0 0 1 0 1 PAXIP1 chr7:154738135 3'AG 154738135 Downstream 26bp
chr17 37681082 37681082 1 + C A SKCM 37681077 + 37681057 37681097 41 ACTGAGCCTGTGAAGAACAGCAGCCCAGCACCACCTCAGCC ACTGAGCCTGTGAAGAACAGCAGCCAAGCACCACCTCAGCC < 41bp 1 0.422626183029779 1 0.325722634792328 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37681077 chr17:37681082 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_35171 0 0 1 0 1 CDK12 chr17:37681138 5'GT 37681138 Upstream 57bp
chr6 31594925 31594925 1 + C T SKCM 31594939 + 31594919 31594959 41 CTACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC CTACCCTCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC < 41bp 1 0.288411007675472 1 0.0872040390968323 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594939 chr6:31594925 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_35172 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 51bp
chr6 31594925 31594925 1 + C T SKCM 31594940 + 31594920 31594960 41 TACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC TACCCTCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC < 41bp 1 0.283754846559995 1 0.1861552298069 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594940 chr6:31594925 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_35173 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 51bp
chr6 31594925 31594925 1 + C T SKCM 31594941 + 31594921 31594961 41 ACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC ACCCTCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC < 41bp 1 0.342050213502506 1 0.2342449426651 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594941 chr6:31594925 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_35174 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 51bp
chr6 31594925 31594925 1 + C T SKCM 31594942 + 31594922 31594962 41 CCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCC CCCTCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCC < 41bp 1 0.582532168938697 1 0.527479767799377 experiment 0.834935662122605 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594942 chr6:31594925 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_35175 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 51bp
chr10 94822677 94822677 1 + G A SKCM 94822661 + 94822641 94822681 41 GGGGTTGCGGCTGGACGAGGCGCAGTGCGCCACGCTGGCCC GGGGTTGCGGCTGGACGAGGCGCAGTGCGCCACGCTAGCCC < 41bp 1 0.706026612162347 1 0.548625886440277 experiment 0.587946775675305 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94822661 chr10:94822677 synonymous SNV . 0 37 hm5C_associated_SNPs_35176 0 0 0 0 1 CYP26C1 chr10:94822752 5'GT 94822752 Upstream 76bp
chr10 94822677 94822677 1 + G A SKCM 94822663 + 94822643 94822683 41 GGTTGCGGCTGGACGAGGCGCAGTGCGCCACGCTGGCCCGG GGTTGCGGCTGGACGAGGCGCAGTGCGCCACGCTAGCCCGG < 41bp 1 0.679410055098269 1 0.593871891498566 experiment 0.641179889803461 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94822663 chr10:94822677 synonymous SNV . 0 35 hm5C_associated_SNPs_35177 0 0 0 0 1 CYP26C1 chr10:94822752 5'GT 94822752 Upstream 76bp
chr1 60302572 60302572 1 + C T SKCM 60302568 + 60302548 60302588 41 ATGAGTAAAGAAATATTGAGCTCTCCTCCAAATGATGCTGT ATGAGTAAAGAAATATTGAGCTCTTCTCCAAATGATGCTGT < 41bp 1 0.0936986347478828 1 0.0472326278686523 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HOOK1 ENSG00000134709 CDS Human protein_coding chr1:60302568 chr1:60302572 nonsynonymous SNV 0.265 0 25 hm5C_associated_SNPs_35178 0 0 1 0 2 HOOK1 chr1:60302545 3'AG 60302545 Downstream 28bp
chr1 60302572 60302572 1 + C T SKCM 60302568 + 60302548 60302588 41 ATGAGTAAAGAAATATTGAGCTCTCCTCCAAATGATGCTGT ATGAGTAAAGAAATATTGAGCTCTTCTCCAAATGATGCTGT < 41bp 1 0.0936986347478828 1 0.0472326278686523 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HOOK1 ENSG00000134709 CDS Human protein_coding chr1:60302568 chr1:60302572 nonsynonymous SNV 0.265 0 25 hm5C_associated_SNPs_35178 0 0 1 0 2 HOOK1 chr1:60302607 5'GT 60302607 Upstream 36bp
chr6 130381225 130381225 1 + G A SKCM 130381222 + 130381202 130381242 41 AAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGCGTGGA AAAAATGGATTCAAAGTTGGCATAAAATTAGAAGGCGTGGA < 41bp 1 0.288275317685485 1 0.272339701652527 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130381222 chr6:130381225 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_35179 0 0 1 0 2 L3MBTL3 chr6:130381181 3'AG 130381181 Downstream 45bp
chr6 130381225 130381225 1 + G A SKCM 130381222 + 130381202 130381242 41 AAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGCGTGGA AAAAATGGATTCAAAGTTGGCATAAAATTAGAAGGCGTGGA < 41bp 1 0.288275317685485 1 0.272339701652527 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130381222 chr6:130381225 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_35179 0 0 1 0 2 L3MBTL3 chr6:130381285 5'GT 130381285 Upstream 61bp
chr2 231931703 231931703 1 + T A SKCM 231931688 + 231931668 231931708 41 TGCCTGAAGGAGAAAAAAAACCAATTGACCAGAGATTGGAA TGCCTGAAGGAGAAAAAAAACCAATTGACCAGAGAATGGAA < 41bp 1 0.191934711963603 1 0.182340443134308 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231931688 chr2:231931703 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_35180 0 0 1 0 1 PSMD1 chr2:231931620 3'AG 231931620 Downstream 84bp
chr2 231931703 231931703 1 + T A SKCM 231931696 + 231931676 231931716 41 GGAGAAAAAAAACCAATTGACCAGAGATTGGAAGGCATCGT GGAGAAAAAAAACCAATTGACCAGAGAATGGAAGGCATCGT < 41bp 1 0.599578721612009 1 0.0880196690559387 experiment 0.800842556775982 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231931696 chr2:231931703 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_35181 0 0 1 0 1 PSMD1 chr2:231931620 3'AG 231931620 Downstream 84bp
chr7 128407644 128407644 1 + C T SKCM 128407640 + 128407620 128407660 41 GAAGAGACCAAAGACTGGATCCTTCCCTCAGACTATGATCA GAAGAGACCAAAGACTGGATCCTTTCCTCAGACTATGATCA < 41bp 1 0.0293083980664873 1 0.0195875465869904 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CALU ENSG00000128595 CDS Human protein_coding chr7:128407640 chr7:128407644 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_35182 0 0 1 0 1 CALU chr7:128407709 5'GT 128407709 Upstream 66bp
chr7 128407644 128407644 1 + C T SKCM 128407641 + 128407621 128407661 41 AAGAGACCAAAGACTGGATCCTTCCCTCAGACTATGATCAT AAGAGACCAAAGACTGGATCCTTTCCTCAGACTATGATCAT < 41bp 1 0.0704253815872425 1 0.0285425782203674 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CALU ENSG00000128595 CDS Human protein_coding chr7:128407641 chr7:128407644 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_35183 0 0 1 0 1 CALU chr7:128407709 5'GT 128407709 Upstream 66bp
chr10 94822678 94822678 1 + G A SKCM 94822661 + 94822641 94822681 41 GGGGTTGCGGCTGGACGAGGCGCAGTGCGCCACGCTGGCCC GGGGTTGCGGCTGGACGAGGCGCAGTGCGCCACGCTGACCC < 41bp 1 0.718087484796148 1 0.498998731374741 experiment 0.563825030407703 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94822661 chr10:94822678 nonsynonymous SNV 0.858 0 38 hm5C_associated_SNPs_35184 0 0 0 0 1 CYP26C1 chr10:94822752 5'GT 94822752 Upstream 75bp
chr10 94822678 94822678 1 + G A SKCM 94822663 + 94822643 94822683 41 GGTTGCGGCTGGACGAGGCGCAGTGCGCCACGCTGGCCCGG GGTTGCGGCTGGACGAGGCGCAGTGCGCCACGCTGACCCGG < 41bp 1 0.685573762219059 1 0.531094610691071 experiment 0.628852475561882 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94822663 chr10:94822678 nonsynonymous SNV 0.858 0 36 hm5C_associated_SNPs_35185 0 0 0 0 1 CYP26C1 chr10:94822752 5'GT 94822752 Upstream 75bp
chr19 4222714 4222714 1 + G A SKCM 4222718 + 4222698 4222738 41 TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCGCCACC TTAAGGAAGCCTTGAAAGAGCAGCCGGCCGCCCTCGCCACC < 41bp 1 0.342323604168743 1 0.150063276290894 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4222718 chr19:4222714 synonymous SNV . 0 17 hm5C_associated_SNPs_35186 0 0 0 0 2 ANKRD24 chr19:4222667 3'AG 4222667 Downstream 48bp
chr19 4222714 4222714 1 + G A SKCM 4222718 + 4222698 4222738 41 TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCGCCACC TTAAGGAAGCCTTGAAAGAGCAGCCGGCCGCCCTCGCCACC < 41bp 1 0.342323604168743 1 0.150063276290894 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4222718 chr19:4222714 synonymous SNV . 0 17 hm5C_associated_SNPs_35186 0 0 0 0 2 ANKRD24 chr19:4222792 5'GT 4222792 Upstream 79bp
chr11 61897297 61897297 1 + C A SKCM 61897299 + 61897279 61897319 41 AGCCAGCTGAGCTCCCGACGCCTCCGCAGCAAGGACAGTGT AGCCAGCTGAGCTCCCGAAGCCTCCGCAGCAAGGACAGTGT < 41bp 1 0.0506371378093571 1 0.343448281288147 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61897299 chr11:61897297 nonsynonymous SNV 0.797 0 19 hm5C_associated_SNPs_35187 0 0 1 0 1 INCENP chr11:61897254 3'AG 61897254 Downstream 44bp
chr12 110771024 110771024 1 + A G SKCM 110771014 + 110770994 110771034 41 ATGATAAACCAGTGAATTGTCACCAGTATGATGGTCTGGTA ATGATAAACCAGTGAATTGTCACCAGTATGGTGGTCTGGTA < 41bp 1 0.791571485492058 1 0.412213504314423 experiment 0.416857029015883 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP2A2 ENSG00000174437 CDS Human protein_coding chr12:110771014 chr12:110771024 nonsynonymous SNV 0.971 3 31 hm5C_associated_SNPs_35188 0 0 1 0 2 ATP2A2 chr12:110770986 3'AG 110770986 Downstream 39bp
chr12 110771024 110771024 1 + A G SKCM 110771014 + 110770994 110771034 41 ATGATAAACCAGTGAATTGTCACCAGTATGATGGTCTGGTA ATGATAAACCAGTGAATTGTCACCAGTATGGTGGTCTGGTA < 41bp 1 0.791571485492058 1 0.412213504314423 experiment 0.416857029015883 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP2A2 ENSG00000174437 CDS Human protein_coding chr12:110771014 chr12:110771024 nonsynonymous SNV 0.971 3 31 hm5C_associated_SNPs_35188 0 0 1 0 2 ATP2A2 chr12:110771088 5'GT 110771088 Upstream 65bp
chr7 142459645 142459645 1 + G A SKCM 142459625 + 142459605 142459645 41 ATGCCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGG ATGCCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGA < 41bp 1 0.510275643893748 1 0.395811378955841 experiment 0.979448712212505 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459625 chr7:142459645 nonsynonymous SNV 0.992 5 41 hm5C_associated_SNPs_35189 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 21bp
chr7 142459645 142459645 1 + G A SKCM 142459626 + 142459606 142459646 41 TGCCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGA TGCCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGAA < 41bp 1 0.336902498654467 1 0.370395481586456 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459626 chr7:142459645 nonsynonymous SNV 0.992 5 40 hm5C_associated_SNPs_35190 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 21bp
chr7 142459645 142459645 1 + G A SKCM 142459628 + 142459608 142459648 41 CCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGA CCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGAAGA < 41bp 1 0.246339964974629 1 0.0950856506824493 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459628 chr7:142459645 nonsynonymous SNV 0.992 5 38 hm5C_associated_SNPs_35191 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 21bp
chr7 142459645 142459645 1 + G A SKCM 142459631 + 142459611 142459651 41 GCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGAGCA GCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGAAGAGCA < 41bp 1 0.560908117690915 1 0.787490367889404 experiment 0.87818376461817 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459631 chr7:142459645 nonsynonymous SNV 0.992 5 35 hm5C_associated_SNPs_35192 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 21bp
chr7 142459645 142459645 1 + G A SKCM 142459632 + 142459612 142459652 41 CCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGAGCAC CCCTGCCCATCAGCCGCATCCAGGTGAGACTGGAAGAGCAC < 41bp 1 0.799399498566544 1 0.797885417938232 experiment 0.401201002866912 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459632 chr7:142459645 nonsynonymous SNV 0.992 5 34 hm5C_associated_SNPs_35193 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 21bp
chr7 142459645 142459645 1 + G A SKCM 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTGAGACTGGAAGAGCACAACATCGAAGTCCTGGAGGGGAA < 41bp 1 0.678935277600182 1 0.129758179187775 experiment 0.642129444799636 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459645 nonsynonymous SNV 0.992 5 11 hm5C_associated_SNPs_35194 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 21bp
chr7 142459645 142459645 1 + G A SKCM 142459658 + 142459638 142459678 41 AGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAATGA AGACTGGAAGAGCACAACATCGAAGTCCTGGAGGGGAATGA < 41bp 1 0.735233636768855 1 0.502616941928864 experiment 0.529532726462289 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459658 chr7:142459645 nonsynonymous SNV 0.992 5 8 hm5C_associated_SNPs_35195 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 21bp
chr7 142459645 142459645 1 + G A SKCM 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GAAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT < 41bp 1 0.512011786228565 1 0.357793152332306 experiment 0.975976427542871 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459645 nonsynonymous SNV 0.992 5 2 hm5C_associated_SNPs_35196 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 21bp
chr21 46900420 46900420 1 + C T SKCM 46900416 + 46900396 46900436 41 GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTGCGGGT GAGGGATCTGGCTTCGGGGGCGATTTGGAGGCCCTGCGGGT < 41bp 1 0.0536451362664877 1 0.122714310884476 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900416 chr21:46900420 synonymous SNV . 0 25 hm5C_associated_SNPs_35197 0 0 1 0 2 COL18A1 chr21:46900381 3'AG 46900381 Downstream 40bp
chr21 46900420 46900420 1 + C T SKCM 46900416 + 46900396 46900436 41 GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTGCGGGT GAGGGATCTGGCTTCGGGGGCGATTTGGAGGCCCTGCGGGT < 41bp 1 0.0536451362664877 1 0.122714310884476 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900416 chr21:46900420 synonymous SNV . 0 25 hm5C_associated_SNPs_35197 0 0 1 0 2 COL18A1 chr21:46900434 5'GT 46900434 Upstream 15bp
chr3 142408621 142408621 1 + G A SKCM 142408604 + 142408584 142408624 41 CTAATTTGTTTAACACATACCCGTGCCTGCACAAGCCGAAT CTAATTTGTTTAACACATACCCGTGCCTGCACAAGCCAAAT < 41bp 1 0.125927028204854 1 0.0447201430797577 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PLS1 ENSG00000120756 CDS Human protein_coding chr3:142408604 chr3:142408621 synonymous SNV . 0 38 hm5C_associated_SNPs_35199 0 0 0 0 1 PLS1 chr3:142408655 5'GT 142408655 Upstream 35bp
chr6 21198298 21198298 1 + C T SKCM 21198317 + 21198297 21198337 41 TCCAAGTTTTATGTTGCACACAATCAATTCTATGAGCAGGT TTCAAGTTTTATGTTGCACACAATCAATTCTATGAGCAGGT < 41bp 1 0.0402328315495758 1 0.112194746732712 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDKAL1 ENSG00000145996 CDS Human protein_coding chr6:21198317 chr6:21198298 nonsynonymous SNV 0.999 3 2 hm5C_associated_SNPs_35200 0 0 0 0 2 CDKAL1 chr6:21198252 3'AG 21198252 Downstream 47bp
chr6 21198298 21198298 1 + C T SKCM 21198317 + 21198297 21198337 41 TCCAAGTTTTATGTTGCACACAATCAATTCTATGAGCAGGT TTCAAGTTTTATGTTGCACACAATCAATTCTATGAGCAGGT < 41bp 1 0.0402328315495758 1 0.112194746732712 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDKAL1 ENSG00000145996 CDS Human protein_coding chr6:21198317 chr6:21198298 nonsynonymous SNV 0.999 3 2 hm5C_associated_SNPs_35200 0 0 0 0 2 CDKAL1 chr6:21198335 5'GT 21198335 Upstream 38bp
chr3 14487283 14487283 1 + C T SKCM 14487265 + 14487245 14487285 41 TTTATTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTT TTTATTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTTTT < 41bp 1 0.199662200977918 1 0.356796115636826 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487265 chr3:14487283 synonymous SNV . 0 39 hm5C_associated_SNPs_35207 0 0 1 1 2 SLC6A6 chr3:14487225 3'AG 14487225 Downstream 59bp
chr3 14487283 14487283 1 + C T SKCM 14487265 + 14487245 14487285 41 TTTATTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTT TTTATTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTTTT < 41bp 1 0.199662200977918 1 0.356796115636826 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487265 chr3:14487283 synonymous SNV . 0 39 hm5C_associated_SNPs_35207 0 0 1 1 2 SLC6A6 chr3:14487359 5'GT 14487359 Upstream 77bp
chr3 14487283 14487283 1 + C T SKCM 14487269 + 14487249 14487289 41 TTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTTGGAG TTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTTTTGGAG < 41bp 1 0.304125549525585 1 0.267167538404465 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487269 chr3:14487283 synonymous SNV . 0 35 hm5C_associated_SNPs_35208 0 0 1 1 2 SLC6A6 chr3:14487225 3'AG 14487225 Downstream 59bp
chr3 14487283 14487283 1 + C T SKCM 14487269 + 14487249 14487289 41 TTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTTGGAG TTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTTTTGGAG < 41bp 1 0.304125549525585 1 0.267167538404465 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487269 chr3:14487283 synonymous SNV . 0 35 hm5C_associated_SNPs_35208 0 0 1 1 2 SLC6A6 chr3:14487359 5'GT 14487359 Upstream 77bp
chr16 5128005 5128005 1 + C T SKCM 5128001 + 5127981 5128021 41 ATGAAGCTGGGCAGCATGCACTCTCCGTTCAGGGCCCGGTA ATGAAGCTGGGCAGCATGCACTCTTCGTTCAGGGCCCGGTA < 41bp 1 0.438604017045412 1 0.0533750355243683 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128001 chr16:5128005 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_35209 0 0 1 0 2 ALG1 chr16:5127908 3'AG 5127908 Downstream 98bp
chr16 5128005 5128005 1 + C T SKCM 5128001 + 5127981 5128021 41 ATGAAGCTGGGCAGCATGCACTCTCCGTTCAGGGCCCGGTA ATGAAGCTGGGCAGCATGCACTCTTCGTTCAGGGCCCGGTA < 41bp 1 0.438604017045412 1 0.0533750355243683 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128001 chr16:5128005 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_35209 0 0 1 0 2 ALG1 chr16:5128018 5'GT 5128018 Upstream 14bp
chr1 10381867 10381867 1 + C A SKCM 10381855 + 10381835 10381875 41 ACTTCATTACGGGACTTACTCTGGGGCAATGCCGTGTACCT ACTTCATTACGGGACTTACTCTGGGGCAATGCAGTGTACCT < 41bp 1 0.756739964858943 1 0.947256088256836 experiment 0.486520070282114 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10381855 chr1:10381867 synonymous SNV . 0 33 hm5C_associated_SNPs_35210 0 0 1 0 1 KIF1B chr1:10381915 5'GT 10381915 Upstream 49bp
chr11 57577669 57577669 1 + G A SKCM 57577685 + 57577665 57577705 41 AAAAGAAGGATGGAAGAAATCAGACTTTCAGGTATAGTAAC AAAAAAAGGATGGAAGAAATCAGACTTTCAGGTATAGTAAC < 41bp 1 0.469553550030562 1 0.473852783441544 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57577685 chr11:57577669 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_35211 0 0 1 0 2 CTNND1 chr11:57577581 3'AG 57577581 Downstream 89bp
chr11 57577669 57577669 1 + G A SKCM 57577685 + 57577665 57577705 41 AAAAGAAGGATGGAAGAAATCAGACTTTCAGGTATAGTAAC AAAAAAAGGATGGAAGAAATCAGACTTTCAGGTATAGTAAC < 41bp 1 0.469553550030562 1 0.473852783441544 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57577685 chr11:57577669 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_35211 0 0 1 0 2 CTNND1 chr11:57577695 5'GT 57577695 Upstream 27bp
chr8 17406292 17406292 1 + G A SKCM 17406301 + 17406281 17406321 41 GTTTGTGAAAGGAAATGTGGCAAACTGGAAGATTAGTGAAG GTTTGTGAAAGAAAATGTGGCAAACTGGAAGATTAGTGAAG < 41bp 1 0.145982809824776 1 0.113377422094345 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17406301 chr8:17406292 nonsynonymous SNV 1.000 5 12 hm5C_associated_SNPs_35212 0 0 1 0 1 SLC7A2 chr8:17406352 5'GT 17406352 Upstream 61bp
chr8 132968066 132968066 1 + T A SKCM 132968077 + 132968057 132968097 41 AGAGAATCCTGCTGTGCTGGCTGAAAACTGTTTCAGAGAAC AGAGAATCCAGCTGTGCTGGCTGAAAACTGTTTCAGAGAAC < 41bp 1 0.715398691274222 1 0.440450668334961 experiment 0.569202617451557 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFR3A ENSG00000132294 CDS Human protein_coding chr8:132968077 chr8:132968066 synonymous SNV . 0 10 hm5C_associated_SNPs_35213 0 0 1 0 2 EFR3A chr8:132968015 3'AG 132968015 Downstream 52bp
chr8 132968066 132968066 1 + T A SKCM 132968077 + 132968057 132968097 41 AGAGAATCCTGCTGTGCTGGCTGAAAACTGTTTCAGAGAAC AGAGAATCCAGCTGTGCTGGCTGAAAACTGTTTCAGAGAAC < 41bp 1 0.715398691274222 1 0.440450668334961 experiment 0.569202617451557 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFR3A ENSG00000132294 CDS Human protein_coding chr8:132968077 chr8:132968066 synonymous SNV . 0 10 hm5C_associated_SNPs_35213 0 0 1 0 2 EFR3A chr8:132968152 5'GT 132968152 Upstream 87bp
chr13 53216577 53216577 1 + C A SKCM 53216566 + 53216546 53216586 41 TATCTAAGATCTCTGGTGGACTTTTTCTGCCCGTGGACGCC TATCTAAGATCTCTGGTGGACTTTTTCTGCCAGTGGACGCC < 41bp 1 0.22101986659974 1 0.0374245941638947 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HNRNPA1L2 ENSG00000139675 UTR5 Human protein_coding chr13:53216566 chr13:53216577 . . 0 32 hm5C_associated_SNPs_35214 0 0 1 0 1 HNRNPA1L2 chr13:53216541 3'AG 53216541 Downstream 37bp
chr12 67699410 67699410 1 + C T SKCM 67699418 + 67699398 67699438 41 AGGGGTTCCTATCCTTGCTTCATTTCTTAGAAAAAACCAGA AGGGGTTCCTATTCTTGCTTCATTTCTTAGAAAAAACCAGA < 41bp 1 0.0304504700375604 1 0.0965085327625275 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CAND1 ENSG00000111530 CDS Human protein_coding chr12:67699418 chr12:67699410 synonymous SNV . 0 13 hm5C_associated_SNPs_35215 0 0 1 0 1 CAND1 chr12:67699323 3'AG 67699323 Downstream 88bp
chr12 67699411 67699411 1 + C T SKCM 67699418 + 67699398 67699438 41 AGGGGTTCCTATCCTTGCTTCATTTCTTAGAAAAAACCAGA AGGGGTTCCTATCTTTGCTTCATTTCTTAGAAAAAACCAGA < 41bp 1 0.0300378905657878 1 0.0669116377830505 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CAND1 ENSG00000111530 CDS Human protein_coding chr12:67699418 chr12:67699411 nonsynonymous SNV 0.998 4 14 hm5C_associated_SNPs_35216 0 0 1 0 1 CAND1 chr12:67699323 3'AG 67699323 Downstream 89bp
chr1 44134855 44134855 1 + C T SKCM 44134847 + 44134827 44134867 41 AGGAGGTGAGTCAGAGTGAGCTCTTCCCCAAGGAGGATCTG AGGAGGTGAGTCAGAGTGAGCTCTTCCCTAAGGAGGATCTG < 41bp 1 0.240252098693413 1 0.0237171947956085 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KDM4A ENSG00000066135 CDS Human protein_coding chr1:44134847 chr1:44134855 synonymous SNV . 0 29 hm5C_associated_SNPs_35217 0 0 1 0 1 KDM4A chr1:44134771 3'AG 44134771 Downstream 85bp
chr1 44134854 44134854 1 + C T SKCM 44134847 + 44134827 44134867 41 AGGAGGTGAGTCAGAGTGAGCTCTTCCCCAAGGAGGATCTG AGGAGGTGAGTCAGAGTGAGCTCTTCCTCAAGGAGGATCTG < 41bp 1 0.239238583107895 1 0.018243283033371 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KDM4A ENSG00000066135 CDS Human protein_coding chr1:44134847 chr1:44134854 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_35218 0 0 1 0 1 KDM4A chr1:44134771 3'AG 44134771 Downstream 84bp
chr11 64803007 64803007 1 + C T SKCM 64803026 + 64803006 64803046 41 TCCAGCCCTGCCCAGGAGGCCCTGGATCTCCTCTTTAACTG TTCAGCCCTGCCCAGGAGGCCCTGGATCTCCTCTTTAACTG < 41bp 1 0.262798098200237 1 0.0799706876277924 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64803026 chr11:64803007 nonsynonymous SNV 0.992 1 2 hm5C_associated_SNPs_35219 0 0 1 0 1 SNX15 chr11:64802992 3'AG 64802992 Downstream 16bp
chr12 111744796 111744796 1 + C T SKCM 111744777 + 111744757 111744797 41 TCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCC TCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATTC < 41bp 1 0.0350363186703308 1 0.064323753118515 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744777 chr12:111744796 synonymous SNV . 0 40 hm5C_associated_SNPs_35220 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 72bp
chr12 111744796 111744796 1 + C T SKCM 111744778 + 111744758 111744798 41 CGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCT CGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATTCT < 41bp 1 0.528696578486809 1 0.967646360397339 experiment 0.942606843026382 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744778 chr12:111744796 synonymous SNV . 0 39 hm5C_associated_SNPs_35221 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 72bp
chr12 111744796 111744796 1 + C T SKCM 111744780 + 111744760 111744800 41 GCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGC GCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATTCTGC < 41bp 1 0.229798034831092 1 0.81638491153717 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744780 chr12:111744796 synonymous SNV . 0 37 hm5C_associated_SNPs_35222 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 72bp
chr12 111744796 111744796 1 + C T SKCM 111744781 + 111744761 111744801 41 CTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGCG CTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATTCTGCG < 41bp 1 0.348940745994565 1 0.727977156639099 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744781 chr12:111744796 synonymous SNV . 0 36 hm5C_associated_SNPs_35223 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 72bp
chr1 183086480 183086480 1 + G A SKCM 183086473 + 183086453 183086493 41 AGATGAGGATGGGTGGCGTGCGGAACAGAGAGATGGCTCTG AGATGAGGATGGGTGGCGTGCGGAACAAAGAGATGGCTCTG < 41bp 1 0.733017776866835 1 0.899189531803131 experiment 0.533964446266331 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183086473 chr1:183086480 synonymous SNV . 0 28 hm5C_associated_SNPs_35224 0 0 1 0 2 LAMC1 chr1:183086455 3'AG 183086455 Downstream 26bp
chr1 183086480 183086480 1 + G A SKCM 183086473 + 183086453 183086493 41 AGATGAGGATGGGTGGCGTGCGGAACAGAGAGATGGCTCTG AGATGAGGATGGGTGGCGTGCGGAACAAAGAGATGGCTCTG < 41bp 1 0.733017776866835 1 0.899189531803131 experiment 0.533964446266331 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183086473 chr1:183086480 synonymous SNV . 0 28 hm5C_associated_SNPs_35224 0 0 1 0 2 LAMC1 chr1:183086577 5'GT 183086577 Upstream 98bp
chr16 30723167 30723167 1 + G A SKCM 30723169 + 30723149 30723189 41 CCTTTAGACTCTGTGGAGGACCGGAGTGAGGATGAGGAAGA CCTTTAGACTCTGTGGAGAACCGGAGTGAGGATGAGGAAGA < 41bp 1 0.533950097323714 1 0.430123656988144 experiment 0.932099805352571 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30723169 chr16:30723167 nonsynonymous SNV 0.895 1 19 hm5C_associated_SNPs_35225 0 0 1 0 1 SRCAP chr16:30723156 3'AG 30723156 Downstream 12bp
chr12 2906432 2906432 1 + C T SKCM 2906431 + 2906411 2906451 41 GGATCGCAAGGACAAATTCTCCTTTGACCTGGGAAAAGGTA GGATCGCAAGGACAAATTCTCTTTTGACCTGGGAAAAGGTA < 41bp 1 0.111687795684597 1 0.0269874632358551 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP4 ENSG00000004478 CDS Human protein_coding chr12:2906431 chr12:2906432 synonymous SNV . 0 22 hm5C_associated_SNPs_35226 0 0 1 0 1 FKBP4 chr12:2906448 5'GT 2906448 Upstream 17bp
chr4 41262678 41262678 1 + G A SKCM 41262672 + 41262652 41262692 41 TTACATTCGCAGCATGAGAACTTCAGGAAAAAGCAGATTGA TTACATTCGCAGCATGAGAACTTCAGAAAAAAGCAGATTGA < 41bp 1 0.342095641499789 1 0.220401644706726 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UCHL1 ENSG00000154277 CDS Human protein_coding chr4:41262672 chr4:41262678 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_35230 0 0 1 0 1 UCHL1 chr4:41262664 3'AG 41262664 Downstream 15bp
chr16 90028230 90028230 1 + C T SKCM 90028231 + 90028211 90028251 41 GGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAAC GGAACGACCTGGCTGTGATTCCTGCACGCGTTGTACACAAC < 41bp 1 0.143524295089724 1 0.210751324892044 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028231 chr16:90028230 synonymous SNV . 0 20 hm5C_associated_SNPs_35232 0 0 1 0 2 DEF8 chr16:90028145 3'AG 90028145 Downstream 86bp
chr16 90028230 90028230 1 + C T SKCM 90028231 + 90028211 90028251 41 GGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAAC GGAACGACCTGGCTGTGATTCCTGCACGCGTTGTACACAAC < 41bp 1 0.143524295089724 1 0.210751324892044 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028231 chr16:90028230 synonymous SNV . 0 20 hm5C_associated_SNPs_35232 0 0 1 0 2 DEF8 chr16:90028272 5'GT 90028272 Upstream 43bp
chr9 107521434 107521434 1 + C T SKCM 107521450 + 107521430 107521470 41 GGATCCCAGAGTTGTGGCAGCTGGTAAGCTGTTTGACTAGG GGATTCCAGAGTTGTGGCAGCTGGTAAGCTGTTTGACTAGG < 41bp 1 0.5772759020946 1 0.269079208374023 experiment 0.8454481958108 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NIPSNAP3A ENSG00000136783 CDS Human protein_coding chr9:107521450 chr9:107521434 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_35233 0 0 1 0 2 NIPSNAP3A chr9:107521366 3'AG 107521366 Downstream 69bp
chr9 107521434 107521434 1 + C T SKCM 107521450 + 107521430 107521470 41 GGATCCCAGAGTTGTGGCAGCTGGTAAGCTGTTTGACTAGG GGATTCCAGAGTTGTGGCAGCTGGTAAGCTGTTTGACTAGG < 41bp 1 0.5772759020946 1 0.269079208374023 experiment 0.8454481958108 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NIPSNAP3A ENSG00000136783 CDS Human protein_coding chr9:107521450 chr9:107521434 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_35233 0 0 1 0 2 NIPSNAP3A chr9:107521452 5'GT 107521452 Upstream 19bp
chr19 1084263 1084263 1 + G A SKCM 1084244 + 1084224 1084264 41 TCTGCACTTGCAGGACGAGTCATCCAACCAGCGAGCTGAGG TCTGCACTTGCAGGACGAGTCATCCAACCAGCGAGCTGAAG < 41bp 1 0.0842509207341848 1 0.0674426555633545 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1084244 chr19:1084263 synonymous SNV . 0 40 hm5C_associated_SNPs_35237 0 0 1 0 2 ARHGAP45 chr19:1084237 3'AG 1084237 Downstream 27bp
chr19 1084263 1084263 1 + G A SKCM 1084244 + 1084224 1084264 41 TCTGCACTTGCAGGACGAGTCATCCAACCAGCGAGCTGAGG TCTGCACTTGCAGGACGAGTCATCCAACCAGCGAGCTGAAG < 41bp 1 0.0842509207341848 1 0.0674426555633545 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1084244 chr19:1084263 synonymous SNV . 0 40 hm5C_associated_SNPs_35237 0 0 1 0 2 ARHGAP45 chr19:1084345 5'GT 1084345 Upstream 83bp
chr5 131976454 131976454 1 + C T SKCM 131976460 + 131976440 131976480 41 AGCCAACAACAAATCTTGACCGAGAAAACATTGAATCTCTT AGCCAACAACAAATTTTGACCGAGAAAACATTGAATCTCTT < 41bp 1 0.625530271025487 1 0.523445308208466 experiment 0.748939457949025 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131976460 chr5:131976454 nonsynonymous SNV 0.977 3 15 hm5C_associated_SNPs_35239 0 0 1 0 2 RAD50 chr5:131976364 3'AG 131976364 Downstream 91bp
chr5 131976454 131976454 1 + C T SKCM 131976460 + 131976440 131976480 41 AGCCAACAACAAATCTTGACCGAGAAAACATTGAATCTCTT AGCCAACAACAAATTTTGACCGAGAAAACATTGAATCTCTT < 41bp 1 0.625530271025487 1 0.523445308208466 experiment 0.748939457949025 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131976460 chr5:131976454 nonsynonymous SNV 0.977 3 15 hm5C_associated_SNPs_35239 0 0 1 0 2 RAD50 chr5:131976497 5'GT 131976497 Upstream 44bp
chr7 142458466 142458466 1 + C T SKCM 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTT < 41bp 1 0.302345808406632 1 0.430259674787521 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458466 nonsynonymous SNV 0.733 4 41 hm5C_associated_SNPs_35240 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 61bp
chr7 142458466 142458466 1 + C T SKCM 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTT < 41bp 1 0.302345808406632 1 0.430259674787521 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458466 nonsynonymous SNV 0.733 4 41 hm5C_associated_SNPs_35240 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 100bp
chr7 142458466 142458466 1 + C T SKCM 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTTTGT < 41bp 1 0.157467569813204 1 0.266753435134888 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458466 nonsynonymous SNV 0.733 4 38 hm5C_associated_SNPs_35241 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 61bp
chr7 142458466 142458466 1 + C T SKCM 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTTTGT < 41bp 1 0.157467569813204 1 0.266753435134888 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458466 nonsynonymous SNV 0.733 4 38 hm5C_associated_SNPs_35241 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 100bp
chr7 142458466 142458466 1 + C T SKCM 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTTTGTCCC < 41bp 1 0.413257822591464 1 0.434963673353195 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458466 nonsynonymous SNV 0.733 4 35 hm5C_associated_SNPs_35242 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 61bp
chr7 142458466 142458466 1 + C T SKCM 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTTTGTCCC < 41bp 1 0.413257822591464 1 0.434963673353195 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458466 nonsynonymous SNV 0.733 4 35 hm5C_associated_SNPs_35242 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 100bp
chr7 142458466 142458466 1 + C T SKCM 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTTTGTCCCCTACCAGGTGTCCCTGAA < 41bp 1 0.166292338921661 1 0.644405663013458 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458466 nonsynonymous SNV 0.733 4 17 hm5C_associated_SNPs_35243 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 61bp
chr7 142458466 142458466 1 + C T SKCM 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTTTGTCCCCTACCAGGTGTCCCTGAA < 41bp 1 0.166292338921661 1 0.644405663013458 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458466 nonsynonymous SNV 0.733 4 17 hm5C_associated_SNPs_35243 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 100bp
chr7 142458466 142458466 1 + C T SKCM 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTTTGTCCCCTACCAGGTGTCCCTGAAT < 41bp 1 0.12161806696952 1 0.089351087808609 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458466 nonsynonymous SNV 0.733 4 16 hm5C_associated_SNPs_35244 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 61bp
chr7 142458466 142458466 1 + C T SKCM 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTTTGTCCCCTACCAGGTGTCCCTGAAT < 41bp 1 0.12161806696952 1 0.089351087808609 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458466 nonsynonymous SNV 0.733 4 16 hm5C_associated_SNPs_35244 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 100bp
chr7 142458466 142458466 1 + C T SKCM 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTTTGTCCCCTACCAGGTGTCCCTGAATT < 41bp 1 0.0145988969053265 1 0.114436447620392 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458466 nonsynonymous SNV 0.733 4 15 hm5C_associated_SNPs_35245 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 61bp
chr7 142458466 142458466 1 + C T SKCM 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTTTGTCCCCTACCAGGTGTCCCTGAATT < 41bp 1 0.0145988969053265 1 0.114436447620392 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458466 nonsynonymous SNV 0.733 4 15 hm5C_associated_SNPs_35245 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 100bp
chr7 142458466 142458466 1 + C T SKCM 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTTTGTCCCCTACCAGGTGTCCCTGAATTC < 41bp 1 0.146923413927511 1 0.0808809399604797 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458466 nonsynonymous SNV 0.733 4 14 hm5C_associated_SNPs_35246 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 61bp
chr7 142458466 142458466 1 + C T SKCM 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTTTGTCCCCTACCAGGTGTCCCTGAATTC < 41bp 1 0.146923413927511 1 0.0808809399604797 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458466 nonsynonymous SNV 0.733 4 14 hm5C_associated_SNPs_35246 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 100bp
chr7 142458466 142458466 1 + C T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTTTGTCCCCTACCAGGTGTCCCTGAATTCTGG < 41bp 1 0.213438764847989 1 0.191204905509949 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458466 nonsynonymous SNV 0.733 4 11 hm5C_associated_SNPs_35247 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 61bp
chr7 142458466 142458466 1 + C T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTTTGTCCCCTACCAGGTGTCCCTGAATTCTGG < 41bp 1 0.213438764847989 1 0.191204905509949 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458466 nonsynonymous SNV 0.733 4 11 hm5C_associated_SNPs_35247 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 100bp
chr7 142458466 142458466 1 + C T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTTTGTCCCCTACCAGGTGTCCCTGAATTCTGGC < 41bp 1 0.630018740376312 1 0.84321391582489 experiment 0.739962519247376 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458466 nonsynonymous SNV 0.733 4 10 hm5C_associated_SNPs_35248 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 61bp
chr7 142458466 142458466 1 + C T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTTTGTCCCCTACCAGGTGTCCCTGAATTCTGGC < 41bp 1 0.630018740376312 1 0.84321391582489 experiment 0.739962519247376 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458466 nonsynonymous SNV 0.733 4 10 hm5C_associated_SNPs_35248 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 100bp
chr7 142458466 142458466 1 + C T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTTTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT < 41bp 1 0.123389916039498 1 0.056979775428772 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458466 nonsynonymous SNV 0.733 4 3 hm5C_associated_SNPs_35249 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 61bp
chr7 142458466 142458466 1 + C T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTTTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT < 41bp 1 0.123389916039498 1 0.056979775428772 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458466 nonsynonymous SNV 0.733 4 3 hm5C_associated_SNPs_35249 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 100bp
chr7 142458466 142458466 1 + C T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TTTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT < 41bp 1 0.290849436631632 1 0.0815038084983826 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458466 nonsynonymous SNV 0.733 4 2 hm5C_associated_SNPs_35250 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 61bp
chr7 142458466 142458466 1 + C T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TTTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT < 41bp 1 0.290849436631632 1 0.0815038084983826 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458466 nonsynonymous SNV 0.733 4 2 hm5C_associated_SNPs_35250 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 100bp
chr7 142458466 142458466 1 + C T SKCM 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC TTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC < 41bp 1 0.72670647225393 1 0.387235730886459 experiment 0.54658705549214 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458466 nonsynonymous SNV 0.733 4 1 hm5C_associated_SNPs_35251 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 61bp
chr7 142458466 142458466 1 + C T SKCM 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC TTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC < 41bp 1 0.72670647225393 1 0.387235730886459 experiment 0.54658705549214 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458466 nonsynonymous SNV 0.733 4 1 hm5C_associated_SNPs_35251 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 100bp
chr22 42273324 42273324 1 + C T SKCM 42273332 + 42273312 42273352 41 TCCTGTGCCTCTCCTTTAACCCCCTGACTTCCCTGCTGCAG TCCTGTGCCTCTTCTTTAACCCCCTGACTTCCCTGCTGCAG < 41bp 1 0.240424836351746 1 0.036128044128418 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42273332 chr22:42273324 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_35252 0 0 1 0 1 SREBF2 chr22:42273233 3'AG 42273233 Downstream 92bp
chr11 46400029 46400029 1 + C T SKCM 46400025 + 46400005 46400045 41 AGGTGAAGAGCTGATTGAGGCTGCCAAGAGGAACGACTTCT AGGTGAAGAGCTGATTGAGGCTGCTAAGAGGAACGACTTCT < 41bp 1 0.220931009867245 1 0.130657404661179 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46400025 chr11:46400029 synonymous SNV . 0 25 hm5C_associated_SNPs_35253 0 0 1 0 2 DGKZ chr11:46400007 3'AG 46400007 Downstream 23bp
chr11 46400029 46400029 1 + C T SKCM 46400025 + 46400005 46400045 41 AGGTGAAGAGCTGATTGAGGCTGCCAAGAGGAACGACTTCT AGGTGAAGAGCTGATTGAGGCTGCTAAGAGGAACGACTTCT < 41bp 1 0.220931009867245 1 0.130657404661179 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46400025 chr11:46400029 synonymous SNV . 0 25 hm5C_associated_SNPs_35253 0 0 1 0 2 DGKZ chr11:46400050 5'GT 46400050 Upstream 22bp
chr11 46400029 46400029 1 + C T SKCM 46400038 + 46400018 46400058 41 ATTGAGGCTGCCAAGAGGAACGACTTCTGTAAGGTACTAGC ATTGAGGCTGCTAAGAGGAACGACTTCTGTAAGGTACTAGC < 41bp 1 0.151999881275354 1 0.308357715606689 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46400038 chr11:46400029 synonymous SNV . 0 12 hm5C_associated_SNPs_35254 0 0 1 0 2 DGKZ chr11:46400007 3'AG 46400007 Downstream 23bp
chr11 46400029 46400029 1 + C T SKCM 46400038 + 46400018 46400058 41 ATTGAGGCTGCCAAGAGGAACGACTTCTGTAAGGTACTAGC ATTGAGGCTGCTAAGAGGAACGACTTCTGTAAGGTACTAGC < 41bp 1 0.151999881275354 1 0.308357715606689 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46400038 chr11:46400029 synonymous SNV . 0 12 hm5C_associated_SNPs_35254 0 0 1 0 2 DGKZ chr11:46400050 5'GT 46400050 Upstream 22bp
chr17 17049365 17049365 1 + T A SKCM 17049376 + 17049356 17049396 41 CTGCTGAATTTCAAGAAAGGCTGGCTGACTAAGCAGTATGA CTGCTGAATATCAAGAAAGGCTGGCTGACTAAGCAGTATGA < 41bp 1 0.162395618185632 1 0.23163765668869 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17049376 chr17:17049365 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_35255 0 0 1 0 2 MPRIP chr17:17049350 3'AG 17049350 Downstream 16bp
chr17 17049365 17049365 1 + T A SKCM 17049376 + 17049356 17049396 41 CTGCTGAATTTCAAGAAAGGCTGGCTGACTAAGCAGTATGA CTGCTGAATATCAAGAAAGGCTGGCTGACTAAGCAGTATGA < 41bp 1 0.162395618185632 1 0.23163765668869 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17049376 chr17:17049365 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_35255 0 0 1 0 2 MPRIP chr17:17049406 5'GT 17049406 Upstream 42bp
chr16 57113039 57113039 1 + A G SKCM 57113028 + 57113008 57113048 41 CAGGCCCTGGATGGATCCCCCCATTTGGAAGAGATCAGGTA CAGGCCCTGGATGGATCCCCCCATTTGGAAGGGATCAGGTA < 41bp 1 0.067363333258363 1 0.0483819544315338 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57113028 chr16:57113039 nonsynonymous SNV 0.981 1 32 hm5C_associated_SNPs_35256 0 0 0 0 2 NLRC5 chr16:57112962 3'AG 57112962 Downstream 78bp
chr16 57113039 57113039 1 + A G SKCM 57113028 + 57113008 57113048 41 CAGGCCCTGGATGGATCCCCCCATTTGGAAGAGATCAGGTA CAGGCCCTGGATGGATCCCCCCATTTGGAAGGGATCAGGTA < 41bp 1 0.067363333258363 1 0.0483819544315338 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57113028 chr16:57113039 nonsynonymous SNV 0.981 1 32 hm5C_associated_SNPs_35256 0 0 0 0 2 NLRC5 chr16:57113045 5'GT 57113045 Upstream 7bp
chr19 1440440 1440440 1 + C T SKCM 1440441 + 1440421 1440461 41 TCGGGGCCACCCACTCCTCCCGCTTCATCCCTCTCAAGTAA TCGGGGCCACCCACTCCTCTCGCTTCATCCCTCTCAAGTAA < 41bp 1 0.359542855697842 1 0.272263824939728 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS15 ENSG00000115268 CDS Human protein_coding chr19:1440441 chr19:1440440 synonymous SNV . 0 20 hm5C_associated_SNPs_35257 0 0 1 0 1 RPS15 chr19:1440348 3'AG 1440348 Downstream 93bp
chr20 18529286 18529286 1 + C T SKCM 18529305 + 18529285 18529325 41 TCAAGTGTTTAACAACAGTCCTGATGAGTCGTCATATTACA TTAAGTGTTTAACAACAGTCCTGATGAGTCGTCATATTACA < 41bp 1 0.197290251896931 1 0.0349871516227722 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC23B ENSG00000101310 CDS Human protein_coding chr20:18529305 chr20:18529286 stopgain 0.994 1 2 hm5C_associated_SNPs_35258 0 0 1 0 1 SEC23B chr20:18529253 3'AG 18529253 Downstream 34bp
chr19 40718847 40718847 1 + C T SKCM 40718840 + 40718820 40718860 41 AGAAGGGACGAACGTGGGGGCCCAGCTCCACCCTGCAGAAG AGAAGGGACGAACGTGGGGGCCCAGCTTCACCCTGCAGAAG < 41bp 1 0.0796925013829044 1 0.153538286685944 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718840 chr19:40718847 nonsynonymous SNV 0.975 4 28 hm5C_associated_SNPs_35260 0 0 1 0 1 MAP3K10 chr19:40718883 5'GT 40718883 Upstream 37bp
chr19 40718847 40718847 1 + C T SKCM 40718841 + 40718821 40718861 41 GAAGGGACGAACGTGGGGGCCCAGCTCCACCCTGCAGAAGG GAAGGGACGAACGTGGGGGCCCAGCTTCACCCTGCAGAAGG < 41bp 1 0.101131702456769 1 0.111550897359848 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718841 chr19:40718847 nonsynonymous SNV 0.975 4 27 hm5C_associated_SNPs_35261 0 0 1 0 1 MAP3K10 chr19:40718883 5'GT 40718883 Upstream 37bp
chr19 40718847 40718847 1 + C T SKCM 40718842 + 40718822 40718862 41 AAGGGACGAACGTGGGGGCCCAGCTCCACCCTGCAGAAGGA AAGGGACGAACGTGGGGGCCCAGCTTCACCCTGCAGAAGGA < 41bp 1 0.209750223195833 1 0.187563806772232 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718842 chr19:40718847 nonsynonymous SNV 0.975 4 26 hm5C_associated_SNPs_35262 0 0 1 0 1 MAP3K10 chr19:40718883 5'GT 40718883 Upstream 37bp
chr8 25168014 25168014 1 + C T SKCM 25168004 + 25167984 25168024 41 ACACTTGGTTGATAGATCAACAGCAATAGCCCGGAAGATGG ACACTTGGTTGATAGATCAACAGCAATAGCTCGGAAGATGG < 41bp 1 0.515472060223843 1 0.188619554042816 experiment 0.969055879552314 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25168004 chr8:25168014 synonymous SNV . 0 31 hm5C_associated_SNPs_35263 0 0 1 0 1 DOCK5 chr8:25168048 5'GT 25168048 Upstream 35bp
chr9 131105503 131105503 1 + T C SKCM 131105522 + 131105502 131105542 41 TTCCTCTACTTGGGATCTGGCGGCTGGCGCTTCATCCGGGT TCCCTCTACTTGGGATCTGGCGGCTGGCGCTTCATCCGGGT < 41bp 1 0.625409999101098 1 0.785299479961395 experiment 0.749180001797805 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC27A4 ENSG00000167114 CDS Human protein_coding chr9:131105522 chr9:131105503 nonsynonymous SNV 0.988 0 2 hm5C_associated_SNPs_35264 0 0 1 0 2 SLC27A4 chr9:131105406 3'AG 131105406 Downstream 98bp
chr9 131105503 131105503 1 + T C SKCM 131105522 + 131105502 131105542 41 TTCCTCTACTTGGGATCTGGCGGCTGGCGCTTCATCCGGGT TCCCTCTACTTGGGATCTGGCGGCTGGCGCTTCATCCGGGT < 41bp 1 0.625409999101098 1 0.785299479961395 experiment 0.749180001797805 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC27A4 ENSG00000167114 CDS Human protein_coding chr9:131105522 chr9:131105503 nonsynonymous SNV 0.988 0 2 hm5C_associated_SNPs_35264 0 0 1 0 2 SLC27A4 chr9:131105572 5'GT 131105572 Upstream 70bp
chr7 2613086 2613086 1 + A C SKCM 2613101 + 2613081 2613121 41 GAAAAAGAAGATATGTATGACGAGATTATTGAGTTAAAGAA GAAAACGAAGATATGTATGACGAGATTATTGAGTTAAAGAA < 41bp 1 0.464188092748483 1 0.535207331180573 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IQCE ENSG00000106012 CDS Human protein_coding chr7:2613101 chr7:2613086 nonsynonymous SNV 0.993 4 6 hm5C_associated_SNPs_35265 0 0 0 0 2 IQCE chr7:2613052 3'AG 2613052 Downstream 35bp
chr7 2613086 2613086 1 + A C SKCM 2613101 + 2613081 2613121 41 GAAAAAGAAGATATGTATGACGAGATTATTGAGTTAAAGAA GAAAACGAAGATATGTATGACGAGATTATTGAGTTAAAGAA < 41bp 1 0.464188092748483 1 0.535207331180573 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IQCE ENSG00000106012 CDS Human protein_coding chr7:2613101 chr7:2613086 nonsynonymous SNV 0.993 4 6 hm5C_associated_SNPs_35265 0 0 0 0 2 IQCE chr7:2613122 5'GT 2613122 Upstream 37bp
chr5 33463897 33463897 1 + A C SKCM 33463905 + 33463885 33463925 41 AATGGTAGTTCCAGTGGGACCAACCTGTGATGAATATGCCC AATGGTAGTTCCCGTGGGACCAACCTGTGATGAATATGCCC < 41bp 1 0.348919331232273 1 0.426869451999664 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33463905 chr5:33463897 synonymous SNV . 0 13 hm5C_associated_SNPs_35268 0 0 1 0 2 TARS chr5:33463858 3'AG 33463858 Downstream 40bp
chr5 33463897 33463897 1 + A C SKCM 33463905 + 33463885 33463925 41 AATGGTAGTTCCAGTGGGACCAACCTGTGATGAATATGCCC AATGGTAGTTCCCGTGGGACCAACCTGTGATGAATATGCCC < 41bp 1 0.348919331232273 1 0.426869451999664 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33463905 chr5:33463897 synonymous SNV . 0 13 hm5C_associated_SNPs_35268 0 0 1 0 2 TARS chr5:33463930 5'GT 33463930 Upstream 34bp
chr1 40724014 40724014 1 + T G SKCM 40724018 + 40723998 40724038 41 ATCTTCGGGGCCGTGCTGCTCTTTTCCTGGACAGTGTATCT ATCTTCGGGGCCGTGCGGCTCTTTTCCTGGACAGTGTATCT < 41bp 1 0.176601088391612 1 0.0177543163299561 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMPSTE24 ENSG00000084073 CDS Human protein_coding chr1:40724018 chr1:40724014 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_35270 0 0 1 0 1 ZMPSTE24 chr1:40724066 5'GT 40724066 Upstream 53bp
chr11 6629302 6629302 1 + A T SKCM 6629293 + 6629273 6629313 41 AAGGGACGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCC AAGGGACGATCATGGCTTCTCCCCCTTGCTCTGGGCCTGCC < 41bp 1 0.236341215957441 1 0.280775129795074 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6629293 chr11:6629302 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_35271 0 0 1 0 1 ILK chr11:6629276 3'AG 6629276 Downstream 27bp
chr11 6629302 6629302 1 + A T SKCM 6629294 + 6629274 6629314 41 AGGGACGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCCG AGGGACGATCATGGCTTCTCCCCCTTGCTCTGGGCCTGCCG < 41bp 1 0.198068763360355 1 0.0744930505752563 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6629294 chr11:6629302 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_35272 0 0 1 0 1 ILK chr11:6629276 3'AG 6629276 Downstream 27bp
chr16 31485738 31485738 1 + C T SKCM 31485729 + 31485709 31485749 41 CCACCTCAGCCACTCTGGAGCTGGATAGACTGATGGCCTCA CCACCTCAGCCACTCTGGAGCTGGATAGATTGATGGCCTCA < 41bp 1 0.788217987516378 1 0.764101028442383 experiment 0.423564024967245 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TGFB1I1 ENSG00000140682 CDS Human protein_coding chr16:31485729 chr16:31485738 synonymous SNV . 0 30 hm5C_associated_SNPs_35280 0 0 0 0 2 TGFB1I1 chr16:31485671 3'AG 31485671 Downstream 68bp
chr16 31485738 31485738 1 + C T SKCM 31485729 + 31485709 31485749 41 CCACCTCAGCCACTCTGGAGCTGGATAGACTGATGGCCTCA CCACCTCAGCCACTCTGGAGCTGGATAGATTGATGGCCTCA < 41bp 1 0.788217987516378 1 0.764101028442383 experiment 0.423564024967245 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TGFB1I1 ENSG00000140682 CDS Human protein_coding chr16:31485729 chr16:31485738 synonymous SNV . 0 30 hm5C_associated_SNPs_35280 0 0 0 0 2 TGFB1I1 chr16:31485776 5'GT 31485776 Upstream 39bp
chr12 109547664 109547664 1 + C T SKCM 109547670 + 109547650 109547690 41 TACAGACGGCTCATCCCTCCCCTTTGTCAGTGTATAGAGGG TACAGACGGCTCATTCCTCCCCTTTGTCAGTGTATAGAGGG < 41bp 1 0.0430506972583937 1 0.0343689322471619 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109547670 chr12:109547664 nonsynonymous SNV 0.938 4 15 hm5C_associated_SNPs_35281 0 0 1 0 1 UNG chr12:109547634 3'AG 109547634 Downstream 31bp
chr17 53014034 53014034 1 + T G SKCM 53014053 + 53014033 53014073 41 TTTTGGAGCAAAATAAGAACCAGAAGGAAGCCACCAATGTA TGTTGGAGCAAAATAAGAACCAGAAGGAAGCCACCAATGTA < 41bp 1 0.696610541358972 1 0.688609182834625 experiment 0.606778917282056 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014053 chr17:53014034 nonsynonymous SNV 0.996 0 2 hm5C_associated_SNPs_35282 0 0 1 0 2 TOM1L1 chr17:53014010 3'AG 53014010 Downstream 25bp
chr17 53014034 53014034 1 + T G SKCM 53014053 + 53014033 53014073 41 TTTTGGAGCAAAATAAGAACCAGAAGGAAGCCACCAATGTA TGTTGGAGCAAAATAAGAACCAGAAGGAAGCCACCAATGTA < 41bp 1 0.696610541358972 1 0.688609182834625 experiment 0.606778917282056 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014053 chr17:53014034 nonsynonymous SNV 0.996 0 2 hm5C_associated_SNPs_35282 0 0 1 0 2 TOM1L1 chr17:53014070 5'GT 53014070 Upstream 37bp
chr19 7620634 7620634 1 + C T SKCM 7620645 + 7620625 7620665 41 GCAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGA GCAGCGGGCTCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGA < 41bp 1 0.262010107168434 1 0.541321337223053 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620645 chr19:7620634 synonymous SNV . 0 10 hm5C_associated_SNPs_35283 0 0 1 0 1 PNPLA6 chr19:7620649 5'GT 7620649 Upstream 16bp
chr19 7620634 7620634 1 + C T SKCM 7620646 + 7620626 7620666 41 CAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGAG CAGCGGGCTCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGAG < 41bp 1 0.493453902586862 1 0.748051583766937 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620646 chr19:7620634 synonymous SNV . 0 9 hm5C_associated_SNPs_35284 0 0 1 0 1 PNPLA6 chr19:7620649 5'GT 7620649 Upstream 16bp
chr6 7572239 7572239 1 + A C SKCM 7572244 + 7572224 7572264 41 AGGATGACTCTCAAAAACCTCCCTCTAGCAGACCAGGGATC AGGATGACTCTCAAACACCTCCCTCTAGCAGACCAGGGATC < 41bp 1 0.0353638678539101 1 0.141133308410645 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572244 chr6:7572239 nonsynonymous SNV 0.705 0 16 hm5C_associated_SNPs_35285 0 0 1 0 1 DSP chr6:7572301 5'GT 7572301 Upstream 63bp
chr11 6629303 6629303 1 + C T SKCM 6629293 + 6629273 6629313 41 AAGGGACGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCC AAGGGACGATCATGGCTTCTCCCCCTTGCATTGGGCCTGCC < 41bp 1 0.216602911412555 1 0.115522682666779 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6629293 chr11:6629303 synonymous SNV . 0 31 hm5C_associated_SNPs_35286 0 0 1 0 1 ILK chr11:6629276 3'AG 6629276 Downstream 28bp
chr11 6629303 6629303 1 + C T SKCM 6629294 + 6629274 6629314 41 AGGGACGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCCG AGGGACGATCATGGCTTCTCCCCCTTGCATTGGGCCTGCCG < 41bp 1 0.173355048235657 1 0.0767934322357178 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6629294 chr11:6629303 synonymous SNV . 0 30 hm5C_associated_SNPs_35287 0 0 1 0 1 ILK chr11:6629276 3'AG 6629276 Downstream 28bp
chr5 38885522 38885522 1 + C T SKCM 38885507 + 38885487 38885527 41 CCGAGGACTTCAAGACTTTGCACTGTACTTGGGATCCTGGG CCGAGGACTTCAAGACTTTGCACTGTACTTGGGATTCTGGG < 41bp 1 0.31995559452101 1 0.0681895613670349 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OSMR ENSG00000145623 CDS Human protein_coding chr5:38885507 chr5:38885522 nonsynonymous SNV 0.811 3 36 hm5C_associated_SNPs_35288 0 0 1 0 2 OSMR chr5:38885451 3'AG 38885451 Downstream 72bp
chr5 38885522 38885522 1 + C T SKCM 38885507 + 38885487 38885527 41 CCGAGGACTTCAAGACTTTGCACTGTACTTGGGATCCTGGG CCGAGGACTTCAAGACTTTGCACTGTACTTGGGATTCTGGG < 41bp 1 0.31995559452101 1 0.0681895613670349 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OSMR ENSG00000145623 CDS Human protein_coding chr5:38885507 chr5:38885522 nonsynonymous SNV 0.811 3 36 hm5C_associated_SNPs_35288 0 0 1 0 2 OSMR chr5:38885586 5'GT 38885586 Upstream 65bp
chr20 39741499 39741499 1 + A T SKCM 39741484 + 39741464 39741504 41 AAAAAATGTGTGGACAAGATCCGGAACCAGTATCGAGAAGA AAAAAATGTGTGGACAAGATCCGGAACCAGTATCGTGAAGA < 41bp 1 0.758867293905338 1 0.272453665733337 experiment 0.482265412189325 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39741484 chr20:39741499 synonymous SNV . 0 36 hm5C_associated_SNPs_35291 0 0 1 0 1 TOP1 chr20:39741565 5'GT 39741565 Upstream 67bp
chr20 18142488 18142488 1 + C T SKCM 18142508 + 18142488 18142528 41 CCATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCGG TCATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCGG < 41bp 1 0.105770430966114 1 0.0389922559261322 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KAT14 ENSG00000149474 CDS Human protein_coding chr20:18142508 chr20:18142488 nonsynonymous SNV 0.997 3 1 hm5C_associated_SNPs_35292 0 0 0 0 2 KAT14 chr20:18142464 3'AG 18142464 Downstream 25bp
chr20 18142488 18142488 1 + C T SKCM 18142508 + 18142488 18142528 41 CCATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCGG TCATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCGG < 41bp 1 0.105770430966114 1 0.0389922559261322 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KAT14 ENSG00000149474 CDS Human protein_coding chr20:18142508 chr20:18142488 nonsynonymous SNV 0.997 3 1 hm5C_associated_SNPs_35292 0 0 0 0 2 KAT14 chr20:18142467 3'AG 18142467 Downstream 22bp
chr6 42561953 42561953 1 + T G SKCM 42561936 + 42561916 42561956 41 ATTTTTTTCCAAGATGACAACATCAGGAGGTGGAGGTTTCT ATTTTTTTCCAAGATGACAACATCAGGAGGTGGAGGTGTCT < 41bp 1 0.16697280475511 1 0.123243719339371 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBR2 ENSG00000024048 CDS Human protein_coding chr6:42561936 chr6:42561953 nonsynonymous SNV 0.998 3 38 hm5C_associated_SNPs_35293 0 0 1 0 2 UBR2 chr6:42561929 3'AG 42561929 Downstream 25bp
chr6 42561953 42561953 1 + T G SKCM 42561936 + 42561916 42561956 41 ATTTTTTTCCAAGATGACAACATCAGGAGGTGGAGGTTTCT ATTTTTTTCCAAGATGACAACATCAGGAGGTGGAGGTGTCT < 41bp 1 0.16697280475511 1 0.123243719339371 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBR2 ENSG00000024048 CDS Human protein_coding chr6:42561936 chr6:42561953 nonsynonymous SNV 0.998 3 38 hm5C_associated_SNPs_35293 0 0 1 0 2 UBR2 chr6:42562042 5'GT 42562042 Upstream 90bp
chr11 47296655 47296655 1 + T C SKCM 47296654 + 47296634 47296674 41 ACTCTCAAGCGCCTGGTGGACTGCTGTAGTGAGCGCCTTCT ACTCTCAAGCGCCTGGTGGACCGCTGTAGTGAGCGCCTTCT < 41bp 1 0.305039282850464 1 0.1430624127388 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MADD ENSG00000110514 CDS Human protein_coding chr11:47296654 chr11:47296655 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_35297 0 0 1 0 1 MADD chr11:47296710 5'GT 47296710 Upstream 56bp
chr12 52695781 52695781 1 + C T SKCM 52695783 + 52695763 52695803 41 GCCCGGCCGCTGCTGCATCACCGCCGCCCCCTACCGTGGCA GCCCGGCCGCTGCTGCATTACCGCCGCCCCCTACCGTGGCA < 41bp 1 0.447462058781803 1 0.121673375368118 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KRT86 ENSG00000170442 CDS Human protein_coding chr12:52695783 chr12:52695781 synonymous SNV . 0 19 hm5C_associated_SNPs_35299 0 0 0 0 1 KRT86 chr12:52695697 3'AG 52695697 Downstream 85bp
chr19 1041937 1041937 1 + G A SKCM 1041928 + 1041908 1041948 41 CCTGCTTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGC CCTGCTTTCCGCAGCTGACACCGGGCGAGAAGCCCGGGCGC < 41bp 1 0.635502807405653 1 0.853396952152252 experiment 0.728994385188695 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041928 chr19:1041937 nonsynonymous SNV 0.027 1 30 hm5C_associated_SNPs_35301 0 0 0 0 1 ABCA7 chr19:1041971 5'GT 1041971 Upstream 35bp
chr19 1041937 1041937 1 + G A SKCM 1041929 + 1041909 1041949 41 CTGCTTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGCC CTGCTTTCCGCAGCTGACACCGGGCGAGAAGCCCGGGCGCC < 41bp 1 0.422577388793585 1 0.931329011917114 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041929 chr19:1041937 nonsynonymous SNV 0.027 1 29 hm5C_associated_SNPs_35302 0 0 0 0 1 ABCA7 chr19:1041971 5'GT 1041971 Upstream 35bp
chr19 1041937 1041937 1 + G A SKCM 1041933 + 1041913 1041953 41 TTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGCCTGAG TTTCCGCAGCTGACACCGGGCGAGAAGCCCGGGCGCCTGAG < 41bp 1 0.598655957732015 1 0.785311341285706 experiment 0.802688084535971 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041933 chr19:1041937 nonsynonymous SNV 0.027 1 25 hm5C_associated_SNPs_35303 0 0 0 0 1 ABCA7 chr19:1041971 5'GT 1041971 Upstream 35bp
chr19 1041937 1041937 1 + G A SKCM 1041940 + 1041920 1041960 41 AGCTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTC AGCTGACACCGGGCGAGAAGCCCGGGCGCCTGAGCAACTTC < 41bp 1 0.431331238194898 1 0.542791962623596 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041940 chr19:1041937 nonsynonymous SNV 0.027 1 18 hm5C_associated_SNPs_35304 0 0 0 0 1 ABCA7 chr19:1041971 5'GT 1041971 Upstream 35bp
chr19 1041937 1041937 1 + G A SKCM 1041941 + 1041921 1041961 41 GCTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCA GCTGACACCGGGCGAGAAGCCCGGGCGCCTGAGCAACTTCA < 41bp 1 0.424546367291413 1 0.826460182666779 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041941 chr19:1041937 nonsynonymous SNV 0.027 1 17 hm5C_associated_SNPs_35305 0 0 0 0 1 ABCA7 chr19:1041971 5'GT 1041971 Upstream 35bp
chr19 1041937 1041937 1 + G A SKCM 1041942 + 1041922 1041962 41 CTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCAA CTGACACCGGGCGAGAAGCCCGGGCGCCTGAGCAACTTCAA < 41bp 1 0.413893459960855 1 0.791459321975708 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041942 chr19:1041937 nonsynonymous SNV 0.027 1 16 hm5C_associated_SNPs_35306 0 0 0 0 1 ABCA7 chr19:1041971 5'GT 1041971 Upstream 35bp
chr11 65347680 65347680 1 + T C SKCM 65347700 + 65347680 65347720 41 TGAGCTGAGCCTCACTCTTTCCGGGGTGCTGCTGCGGGAGG CGAGCTGAGCCTCACTCTTTCCGGGGTGCTGCTGCGGGAGG < 41bp 1 0.632631601174668 1 0.681084990501404 experiment 0.734736797650664 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65347700 chr11:65347680 synonymous SNV . 0 1 hm5C_associated_SNPs_35307 0 0 1 0 1 EHBP1L1 chr11:65347730 5'GT 65347730 Upstream 51bp
chr1 113238118 113238118 1 + C T SKCM 113238138 + 113238118 113238158 41 CCGGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGCCC TCGGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGCCC < 41bp 1 0.0537672857294587 1 0.0459977686405182 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113238138 chr1:113238118 synonymous SNV . 0 1 hm5C_associated_SNPs_35309 0 0 1 0 2 MOV10 chr1:113238038 3'AG 113238038 Downstream 81bp
chr1 113238118 113238118 1 + C T SKCM 113238138 + 113238118 113238158 41 CCGGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGCCC TCGGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGCCC < 41bp 1 0.0537672857294587 1 0.0459977686405182 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113238138 chr1:113238118 synonymous SNV . 0 1 hm5C_associated_SNPs_35309 0 0 1 0 2 MOV10 chr1:113238196 5'GT 113238196 Upstream 79bp
chr1 113238119 113238119 1 + C T SKCM 113238138 + 113238118 113238158 41 CCGGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGCCC CTGGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGCCC < 41bp 1 0.0496707064677229 1 0.0481998026371002 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113238138 chr1:113238119 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_35311 0 0 1 0 2 MOV10 chr1:113238038 3'AG 113238038 Downstream 82bp
chr1 113238119 113238119 1 + C T SKCM 113238138 + 113238118 113238158 41 CCGGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGCCC CTGGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGCCC < 41bp 1 0.0496707064677229 1 0.0481998026371002 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113238138 chr1:113238119 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_35311 0 0 1 0 2 MOV10 chr1:113238196 5'GT 113238196 Upstream 78bp
chr7 100204230 100204230 1 + C A SKCM 100204239 + 100204219 100204259 41 TCCGGAGAAAACAGAGGAATCTCCTTCAGCCCCTGGTGAGT TCCGGAGAAAAAAGAGGAATCTCCTTCAGCCCCTGGTGAGT < 41bp 1 0.326977060098946 1 0.351539969444275 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100204239 chr7:100204230 nonsynonymous SNV 0.002 0 12 hm5C_associated_SNPs_35312 0 0 0 0 1 PCOLCE chr7:100204253 5'GT 100204253 Upstream 24bp
chr6 133844271 133844271 1 + G A SKCM 133844283 + 133844263 133844303 41 TAGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTG TAGTTTAGAAGGTGCTTTCCCCATTGAGAATATTTACAGTG < 41bp 1 0.0712419386462049 1 0.28696882724762 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844283 chr6:133844271 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_35313 0 0 0 0 2 EYA4 chr6:133844194 3'AG 133844194 Downstream 78bp
chr6 133844271 133844271 1 + G A SKCM 133844283 + 133844263 133844303 41 TAGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTG TAGTTTAGAAGGTGCTTTCCCCATTGAGAATATTTACAGTG < 41bp 1 0.0712419386462049 1 0.28696882724762 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844283 chr6:133844271 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_35313 0 0 0 0 2 EYA4 chr6:133844315 5'GT 133844315 Upstream 45bp
chr6 133844271 133844271 1 + G A SKCM 133844284 + 133844264 133844304 41 AGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTGC AGTTTAGAAGGTGCTTTCCCCATTGAGAATATTTACAGTGC < 41bp 1 0.0805080584053977 1 0.150770664215088 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844284 chr6:133844271 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_35314 0 0 0 0 2 EYA4 chr6:133844194 3'AG 133844194 Downstream 78bp
chr6 133844271 133844271 1 + G A SKCM 133844284 + 133844264 133844304 41 AGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTGC AGTTTAGAAGGTGCTTTCCCCATTGAGAATATTTACAGTGC < 41bp 1 0.0805080584053977 1 0.150770664215088 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844284 chr6:133844271 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_35314 0 0 0 0 2 EYA4 chr6:133844315 5'GT 133844315 Upstream 45bp
chr7 100204225 100204225 1 + G A SKCM 100204239 + 100204219 100204259 41 TCCGGAGAAAACAGAGGAATCTCCTTCAGCCCCTGGTGAGT TCCGGAAAAAACAGAGGAATCTCCTTCAGCCCCTGGTGAGT < 41bp 1 0.375920644903541 1 0.215027749538422 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100204239 chr7:100204225 synonymous SNV . 0 7 hm5C_associated_SNPs_35315 0 0 0 0 1 PCOLCE chr7:100204253 5'GT 100204253 Upstream 29bp
chrX 57515255 57515255 1 + C T SKCM 57515266 + 57515246 57515286 41 AAAGGACTCCCTTTAGGCATCCAGGTTGTGGCTGGACCCTT AAAGGACTCTCTTTAGGCATCCAGGTTGTGGCTGGACCCTT < 41bp 1 0.542314749342371 1 0.839446902275085 experiment 0.915370501315259 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57515266 chrX:57515255 nonsynonymous SNV 0.924 4 10 hm5C_associated_SNPs_35316 0 0 0 0 1 FAAH2 chrX:57515190 3'AG 57515190 Downstream 66bp
chr17 38152539 38152539 1 + C T SKCM 38152535 + 38152515 38152555 41 ATTCCACCCGAGAGCCCCAGCTAGCCTTCCACCAGCGCATC ATTCCACCCGAGAGCCCCAGCTAGTCTTCCACCAGCGCATC < 41bp 1 0.422967174550758 1 0.0737082064151764 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38152535 chr17:38152539 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_35317 0 0 1 1 1 PSMD3 chr17:38152591 5'GT 38152591 Upstream 53bp
chr4 183609456 183609456 1 + G A SKCM 183609440 + 183609420 183609460 41 CACCCCCGCTGTGCCGAGCACGGGACCTGCAAGGATGGCAA CACCCCCGCTGTGCCGAGCACGGGACCTGCAAGGATAGCAA < 41bp 1 0.7332136349515 1 0.842272520065308 experiment 0.533572730097 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TENM3 ENSG00000218336 CDS Human protein_coding chr4:183609440 chr4:183609456 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_35318 0 0 0 0 1 TENM3 chr4:183609504 5'GT 183609504 Upstream 49bp
chr5 10263303 10263303 1 + C T SKCM 10263299 + 10263279 10263319 41 TTTGCCGACGCACTGGAGGTCATCCCCATGGCCCTCTCTGA TTTGCCGACGCACTGGAGGTCATCTCCATGGCCCTCTCTGA < 41bp 1 0.167803257073485 1 0.13427060842514 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10263299 chr5:10263303 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_35320 0 0 1 0 1 CCT5 chr5:10263246 3'AG 10263246 Downstream 58bp
chr13 77570195 77570195 1 + T A SKCM 77570189 + 77570169 77570209 41 TGGTGTAATCAAGGCGCTGCCTGCTTTTTTGAGGGAATTGA TGGTGTAATCAAGGCGCTGCCTGCTTATTTGAGGGAATTGA < 41bp 1 0.619993321180231 1 0.169852048158646 experiment 0.760013357639538 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLN5 ENSG00000102805 CDS Human protein_coding chr13:77570189 chr13:77570195 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_35321 0 0 1 0 1 CLN5 chr13:77570262 5'GT 77570262 Upstream 68bp
chr12 132589002 132589002 1 + C T SKCM 132588993 + 132588973 132589013 41 GCAGAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCC GCAGAATGTGCGTGCAGGTGCCCCTGGCCTTGGGCTGGGCC < 41bp 1 0.219881623480044 1 0.0674736797809601 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588993 chr12:132589002 nonsynonymous SNV 0.436 3 30 hm5C_associated_SNPs_35322 0 0 1 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 80bp
chr12 132589002 132589002 1 + C T SKCM 132588994 + 132588974 132589014 41 CAGAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCT CAGAATGTGCGTGCAGGTGCCCCTGGCCTTGGGCTGGGCCT < 41bp 1 0.210737495412398 1 0.0624147951602936 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588994 chr12:132589002 nonsynonymous SNV 0.436 3 29 hm5C_associated_SNPs_35323 0 0 1 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 80bp
chr12 132589002 132589002 1 + C T SKCM 132588995 + 132588975 132589015 41 AGAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTC AGAATGTGCGTGCAGGTGCCCCTGGCCTTGGGCTGGGCCTC < 41bp 1 0.280775674812872 1 0.19547775387764 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588995 chr12:132589002 nonsynonymous SNV 0.436 3 28 hm5C_associated_SNPs_35324 0 0 1 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 80bp
chr12 132589002 132589002 1 + C T SKCM 132588996 + 132588976 132589016 41 GAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCT GAATGTGCGTGCAGGTGCCCCTGGCCTTGGGCTGGGCCTCT < 41bp 1 0.580430074896735 1 0.428669631481171 experiment 0.839139850206529 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588996 chr12:132589002 nonsynonymous SNV 0.436 3 27 hm5C_associated_SNPs_35325 0 0 1 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 80bp
chr12 132589002 132589002 1 + C T SKCM 132589000 + 132588980 132589020 41 GTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAG GTGCGTGCAGGTGCCCCTGGCCTTGGGCTGGGCCTCTGCAG < 41bp 1 0.124963644191009 1 0.120837360620499 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132589000 chr12:132589002 nonsynonymous SNV 0.436 3 23 hm5C_associated_SNPs_35326 0 0 1 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 80bp
chr12 132589002 132589002 1 + C T SKCM 132589001 + 132588981 132589021 41 TGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAGC TGCGTGCAGGTGCCCCTGGCCTTGGGCTGGGCCTCTGCAGC < 41bp 1 0.582547891642189 1 0.470126092433929 experiment 0.834904216715623 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132589001 chr12:132589002 nonsynonymous SNV 0.436 3 22 hm5C_associated_SNPs_35327 0 0 1 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 80bp
chr12 132589002 132589002 1 + C T SKCM 132589007 + 132588987 132589027 41 CAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAGCAGCAGC CAGGTGCCCCTGGCCTTGGGCTGGGCCTCTGCAGCAGCAGC < 41bp 1 0.610905022547003 1 0.463768512010574 experiment 0.778189954905993 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132589007 chr12:132589002 nonsynonymous SNV 0.436 3 16 hm5C_associated_SNPs_35328 0 0 1 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 80bp
chr1 78399027 78399027 1 + G A SKCM 78399025 + 78399005 78399045 41 CTCTCAAGAATTTCTTACACCGGGAAAACTGGAAATTAATT CTCTCAAGAATTTCTTACACCGAGAAAACTGGAAATTAATT < 41bp 1 0.562717021996413 1 0.507203996181488 experiment 0.874565956007174 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NEXN ENSG00000162614 CDS Human protein_coding chr1:78399025 chr1:78399027 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_35329 0 0 0 0 1 NEXN chr1:78398967 3'AG 78398967 Downstream 61bp
chr17 64785059 64785059 1 + G A SKCM 64785043 + 64785023 64785063 41 CATGCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAA CATGCCTTCTTCCGGAGGATCGACTGGGAAAAACTGAAGAA < 41bp 1 0.275194192293672 1 0.213401317596436 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785043 chr17:64785059 nonsynonymous SNV 0.999 1 37 hm5C_associated_SNPs_35330 0 0 1 0 1 PRKCA chr17:64785097 5'GT 64785097 Upstream 39bp
chr17 64785059 64785059 1 + G A SKCM 64785046 + 64785026 64785066 41 GCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAACAG GCCTTCTTCCGGAGGATCGACTGGGAAAAACTGAAGAACAG < 41bp 1 0.565523788332249 1 0.551956653594971 experiment 0.868952423335501 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785046 chr17:64785059 nonsynonymous SNV 0.999 1 34 hm5C_associated_SNPs_35331 0 0 1 0 1 PRKCA chr17:64785097 5'GT 64785097 Upstream 39bp
chr2 24974859 24974859 1 + C T SKCM 24974873 + 24974853 24974893 41 ATGGTTCCCCAAGGTGAGGCCAACTTTGCTCCATCTCTAAG ATGGTTTCCCAAGGTGAGGCCAACTTTGCTCCATCTCTAAG < 41bp 1 0.201416600756388 1 0.0650980174541473 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24974873 chr2:24974859 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_35332 0 0 0 0 1 NCOA1 chr2:24974851 3'AG 24974851 Downstream 9bp
chr11 57574431 57574431 1 + C T SKCM 57574432 + 57574412 57574452 41 AAACGATACAGTGGATTTCCCTAAAAGAACGAGTCCAGCTC AAACGATACAGTGGATTTCTCTAAAAGAACGAGTCCAGCTC < 41bp 1 0.727937643763675 1 0.797238230705261 experiment 0.54412471247265 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57574432 chr11:57574431 nonsynonymous SNV 0.999 4 20 hm5C_associated_SNPs_35333 0 0 1 0 2 CTNND1 chr11:57574387 3'AG 57574387 Downstream 45bp
chr11 57574431 57574431 1 + C T SKCM 57574432 + 57574412 57574452 41 AAACGATACAGTGGATTTCCCTAAAAGAACGAGTCCAGCTC AAACGATACAGTGGATTTCTCTAAAAGAACGAGTCCAGCTC < 41bp 1 0.727937643763675 1 0.797238230705261 experiment 0.54412471247265 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57574432 chr11:57574431 nonsynonymous SNV 0.999 4 20 hm5C_associated_SNPs_35333 0 0 1 0 2 CTNND1 chr11:57574455 5'GT 57574455 Upstream 25bp
chr14 64628973 64628973 1 + C T SKCM 64628971 + 64628951 64628991 41 ACAACCTGGCAGAGATCCTGCCCCCAGCCCTGCAGGACATA ACAACCTGGCAGAGATCCTGCCTCCAGCCCTGCAGGACATA < 41bp 1 0.0435307246381422 1 0.0632185935974121 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64628971 chr14:64628973 synonymous SNV . 0 23 hm5C_associated_SNPs_35334 0 0 1 0 1 SYNE2 chr14:64628994 5'GT 64628994 Upstream 22bp
chr22 41913586 41913586 1 + C T SKCM 41913571 + 41913551 41913591 41 ATGGGTGCAGAAATTGGGGCCACCACTTCCGTGTTCCCTTA ATGGGTGCAGAAATTGGGGCCACCACTTCCGTGTTTCCTTA < 41bp 1 0.562400812628737 1 0.396644055843353 experiment 0.875198374742527 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41913571 chr22:41913586 synonymous SNV . 0 36 hm5C_associated_SNPs_35340 0 0 1 0 2 ACO2 chr22:41913531 3'AG 41913531 Downstream 56bp
chr22 41913586 41913586 1 + C T SKCM 41913571 + 41913551 41913591 41 ATGGGTGCAGAAATTGGGGCCACCACTTCCGTGTTCCCTTA ATGGGTGCAGAAATTGGGGCCACCACTTCCGTGTTTCCTTA < 41bp 1 0.562400812628737 1 0.396644055843353 experiment 0.875198374742527 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41913571 chr22:41913586 synonymous SNV . 0 36 hm5C_associated_SNPs_35340 0 0 1 0 2 ACO2 chr22:41913635 5'GT 41913635 Upstream 50bp
chr11 75508276 75508276 1 + C T SKCM 75508290 + 75508270 75508310 41 CATCATCGTGGTCGGGGGTGCGGCTGAGTCTCTGAGCTCCA CATCATTGTGGTCGGGGGTGCGGCTGAGTCTCTGAGCTCCA < 41bp 1 0.481919875595418 1 0.400032490491867 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75508290 chr11:75508276 synonymous SNV . 0 7 hm5C_associated_SNPs_35345 0 0 1 0 1 DGAT2 chr11:75508203 3'AG 75508203 Downstream 74bp
chr21 40191655 40191655 1 + C T SKCM 40191635 + 40191615 40191655 41 TACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACC TACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACT < 41bp 1 0.186638329153602 1 0.157156616449356 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191635 chr21:40191655 nonsynonymous SNV 0.999 3 41 hm5C_associated_SNPs_35347 0 0 0 0 1 ETS2 chr21:40191690 5'GT 40191690 Upstream 36bp
chr21 40191655 40191655 1 + C T SKCM 40191636 + 40191616 40191656 41 ACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACCA ACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACTA < 41bp 1 0.488427066597394 1 0.518071532249451 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191636 chr21:40191655 nonsynonymous SNV 0.999 3 40 hm5C_associated_SNPs_35348 0 0 0 0 1 ETS2 chr21:40191690 5'GT 40191690 Upstream 36bp
chr21 40191655 40191655 1 + C T SKCM 40191637 + 40191617 40191657 41 CATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACCAG CATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACTAG < 41bp 1 0.621370140023186 1 0.813719749450684 experiment 0.757259719953627 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191637 chr21:40191655 nonsynonymous SNV 0.999 3 39 hm5C_associated_SNPs_35349 0 0 0 0 1 ETS2 chr21:40191690 5'GT 40191690 Upstream 36bp
chr1 200869303 200869303 1 + G A SKCM 200869306 + 200869286 200869326 41 CCCAAGGTTCGCCGCAGGATCGGAGCGGCTTACAAACTGGA CCCAAGGTTCGCCGCAGAATCGGAGCGGCTTACAAACTGGA < 41bp 1 0.706877110939794 1 0.608146667480469 experiment 0.586245778120412 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200869306 chr1:200869303 synonymous SNV . 0 18 hm5C_associated_SNPs_35351 0 0 0 0 2 C1orf106 chr1:200869232 3'AG 200869232 Downstream 72bp
chr1 200869303 200869303 1 + G A SKCM 200869306 + 200869286 200869326 41 CCCAAGGTTCGCCGCAGGATCGGAGCGGCTTACAAACTGGA CCCAAGGTTCGCCGCAGAATCGGAGCGGCTTACAAACTGGA < 41bp 1 0.706877110939794 1 0.608146667480469 experiment 0.586245778120412 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200869306 chr1:200869303 synonymous SNV . 0 18 hm5C_associated_SNPs_35351 0 0 0 0 2 C1orf106 chr1:200869348 5'GT 200869348 Upstream 46bp
chr11 120769326 120769326 1 + C T SKCM 120769341 + 120769321 120769361 41 CACCACCCTGGTCGTCACCACCATCCTGGTAAGTGGGCTCT CACCATCCTGGTCGTCACCACCATCCTGGTAAGTGGGCTCT < 41bp 1 0.0197554003058476 1 0.063030332326889 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120769341 chr11:120769326 nonsynonymous SNV 0.999 3 6 hm5C_associated_SNPs_35356 0 0 0 0 2 GRIK4 chr11:120769241 3'AG 120769241 Downstream 86bp
chr11 120769326 120769326 1 + C T SKCM 120769341 + 120769321 120769361 41 CACCACCCTGGTCGTCACCACCATCCTGGTAAGTGGGCTCT CACCATCCTGGTCGTCACCACCATCCTGGTAAGTGGGCTCT < 41bp 1 0.0197554003058476 1 0.063030332326889 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120769341 chr11:120769326 nonsynonymous SNV 0.999 3 6 hm5C_associated_SNPs_35356 0 0 0 0 2 GRIK4 chr11:120769348 5'GT 120769348 Upstream 23bp
chr9 129974488 129974488 1 + C T SKCM 129974474 + 129974454 129974494 41 TGCCCACCATGGAGGGGCCTCTGAGAAGAAAAACCCTGCTC TGCCCACCATGGAGGGGCCTCTGAGAAGAAAAACTCTGCTC < 41bp 1 0.58728236543593 1 0.414956092834473 experiment 0.825435269128139 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RALGPS1 ENSG00000136828 CDS Human protein_coding chr9:129974474 chr9:129974488 synonymous SNV . 0 35 hm5C_associated_SNPs_35360 0 0 1 0 2 RALGPS1 chr9:129974410 3'AG 129974410 Downstream 79bp
chr9 129974488 129974488 1 + C T SKCM 129974474 + 129974454 129974494 41 TGCCCACCATGGAGGGGCCTCTGAGAAGAAAAACCCTGCTC TGCCCACCATGGAGGGGCCTCTGAGAAGAAAAACTCTGCTC < 41bp 1 0.58728236543593 1 0.414956092834473 experiment 0.825435269128139 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RALGPS1 ENSG00000136828 CDS Human protein_coding chr9:129974474 chr9:129974488 synonymous SNV . 0 35 hm5C_associated_SNPs_35360 0 0 1 0 2 RALGPS1 chr9:129974515 5'GT 129974515 Upstream 28bp
chr20 33764058 33764058 1 + G A SKCM 33764041 + 33764021 33764061 41 TCTAGAGCCCATGTCTTCTTCGAAGTGGCTGTGAATGGGAG TCTAGAGCCCATGTCTTCTTCGAAGTGGCTGTGAATGAGAG < 41bp 1 0.691823029398697 1 0.825856804847717 experiment 0.616353941202606 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PROCR ENSG00000101000 CDS Human protein_coding chr20:33764041 chr20:33764058 nonsynonymous SNV 0.691 2 38 hm5C_associated_SNPs_35361 0 0 1 0 1 PROCR chr20:33763971 3'AG 33763971 Downstream 88bp
chr15 91503669 91503669 1 + C A SKCM 91503649 + 91503629 91503669 41 TTCATAGCTGTCCAGCCCTTCCCGGCATTACTGGATCTCCC TTCATAGCTGTCCAGCCCTTCCCGGCATTACTGGATCTCCA < 41bp 1 0.481426727212764 1 0.330952376127243 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RCCD1 ENSG00000166965 CDS Human protein_coding chr15:91503649 chr15:91503669 nonsynonymous SNV 0.820 3 41 hm5C_associated_SNPs_35370 0 0 1 0 1 RCCD1 chr15:91503728 5'GT 91503728 Upstream 60bp
chr15 91503669 91503669 1 + C A SKCM 91503678 + 91503658 91503698 41 ACTGGATCTCCCCATGGGCTCAGATGCAGTCAAGGCCAGCT ACTGGATCTCCACATGGGCTCAGATGCAGTCAAGGCCAGCT < 41bp 1 0.452315902364474 1 0.482590287923813 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RCCD1 ENSG00000166965 CDS Human protein_coding chr15:91503678 chr15:91503669 nonsynonymous SNV 0.820 3 12 hm5C_associated_SNPs_35371 0 0 1 0 1 RCCD1 chr15:91503728 5'GT 91503728 Upstream 60bp
chr11 67815413 67815413 1 + G A SKCM 67815417 + 67815397 67815437 41 CACCGGTGTCTTCCTGGGACCCTACCCCTTTGGCATCGATC CACCGGTGTCTTCCTGAGACCCTACCCCTTTGGCATCGATC < 41bp 1 0.0115840077188421 1 0.0419726073741913 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815417 chr11:67815413 nonsynonymous SNV 0.999 3 17 hm5C_associated_SNPs_35372 0 0 1 0 2 TCIRG1 chr11:67815349 3'AG 67815349 Downstream 65bp
chr11 67815413 67815413 1 + G A SKCM 67815417 + 67815397 67815437 41 CACCGGTGTCTTCCTGGGACCCTACCCCTTTGGCATCGATC CACCGGTGTCTTCCTGAGACCCTACCCCTTTGGCATCGATC < 41bp 1 0.0115840077188421 1 0.0419726073741913 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815417 chr11:67815413 nonsynonymous SNV 0.999 3 17 hm5C_associated_SNPs_35372 0 0 1 0 2 TCIRG1 chr11:67815439 5'GT 67815439 Upstream 27bp
chr11 67815413 67815413 1 + G A SKCM 67815433 + 67815413 67815453 41 GGACCCTACCCCTTTGGCATCGATCCTGTGAGTCCTGGGAT AGACCCTACCCCTTTGGCATCGATCCTGTGAGTCCTGGGAT < 41bp 1 0.112014486708118 1 0.250919759273529 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815433 chr11:67815413 nonsynonymous SNV 0.999 3 1 hm5C_associated_SNPs_35373 0 0 1 0 2 TCIRG1 chr11:67815349 3'AG 67815349 Downstream 65bp
chr11 67815413 67815413 1 + G A SKCM 67815433 + 67815413 67815453 41 GGACCCTACCCCTTTGGCATCGATCCTGTGAGTCCTGGGAT AGACCCTACCCCTTTGGCATCGATCCTGTGAGTCCTGGGAT < 41bp 1 0.112014486708118 1 0.250919759273529 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815433 chr11:67815413 nonsynonymous SNV 0.999 3 1 hm5C_associated_SNPs_35373 0 0 1 0 2 TCIRG1 chr11:67815439 5'GT 67815439 Upstream 27bp
chr19 18966754 18966754 1 + C T SKCM 18966735 + 18966715 18966755 41 TGCCCCAATGGTGTTGCAGGCCGGTGCTGGTGTGTGCTCCG TGCCCCAATGGTGTTGCAGGCCGGTGCTGGTGTGTGCTCTG < 41bp 1 0.349476135589474 1 0.517578899860382 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18966735 chr19:18966754 nonsynonymous SNV 0.042 5 40 hm5C_associated_SNPs_35374 0 0 1 0 1 UPF1 chr19:18966734 3'AG 18966734 Downstream 21bp
chr11 67815412 67815412 1 + G A SKCM 67815417 + 67815397 67815437 41 CACCGGTGTCTTCCTGGGACCCTACCCCTTTGGCATCGATC CACCGGTGTCTTCCTAGGACCCTACCCCTTTGGCATCGATC < 41bp 1 0.00872769220970116 1 0.0432409346103668 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815417 chr11:67815412 synonymous SNV . 0 16 hm5C_associated_SNPs_35375 0 0 1 0 2 TCIRG1 chr11:67815349 3'AG 67815349 Downstream 64bp
chr11 67815412 67815412 1 + G A SKCM 67815417 + 67815397 67815437 41 CACCGGTGTCTTCCTGGGACCCTACCCCTTTGGCATCGATC CACCGGTGTCTTCCTAGGACCCTACCCCTTTGGCATCGATC < 41bp 1 0.00872769220970116 1 0.0432409346103668 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815417 chr11:67815412 synonymous SNV . 0 16 hm5C_associated_SNPs_35375 0 0 1 0 2 TCIRG1 chr11:67815439 5'GT 67815439 Upstream 28bp
chr22 32445970 32445970 1 + T G SKCM 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGGACTGTTGGAGGCTTCTGCCTGGCAGGCCGAAGTATGGT < 41bp 1 0.210842540941347 1 0.102069288492203 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445970 nonsynonymous SNV 0.999 3 20 hm5C_associated_SNPs_35376 0 0 0 0 2 SLC5A1 chr22:32445930 3'AG 32445930 Downstream 41bp
chr22 32445970 32445970 1 + T G SKCM 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGGACTGTTGGAGGCTTCTGCCTGGCAGGCCGAAGTATGGT < 41bp 1 0.210842540941347 1 0.102069288492203 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445970 nonsynonymous SNV 0.999 3 20 hm5C_associated_SNPs_35376 0 0 0 0 2 SLC5A1 chr22:32446001 5'GT 32446001 Upstream 32bp
chr12 112940036 112940036 1 + G T SKCM 112940029 + 112940009 112940049 41 GTGGAGATCAGAGCCCTCTCCCGCCTTGTACTCCAACGCCA GTGGAGATCAGAGCCCTCTCCCGCCTTTTACTCCAACGCCA < 41bp 1 0.314064132464165 1 0.102933615446091 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112940029 chr12:112940036 nonsynonymous SNV 0.998 2 28 hm5C_associated_SNPs_35377 0 0 1 0 1 PTPN11 chr12:112939948 3'AG 112939948 Downstream 89bp
chr16 89965178 89965178 1 + C T SKCM 89965194 + 89965174 89965214 41 GTCTCGAGCCGGATGAGGACCCCCTCTGCATGCTGCTGCTC GTCTTGAGCCGGATGAGGACCCCCTCTGCATGCTGCTGCTC < 41bp 1 0.251265560816962 1 0.07496577501297 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89965194 chr16:89965178 synonymous SNV . 0 5 hm5C_associated_SNPs_35378 0 0 1 0 1 TCF25 chr16:89965175 3'AG 89965175 Downstream 4bp
chr11 13399897 13399897 1 + G A SKCM 13399900 + 13399880 13399920 41 GTAGGTGGCCCAAAGAGGACCCACCCCACTGTTCCAGGGAT GTAGGTGGCCCAAAGAGAACCCACCCCACTGTTCCAGGGAT < 41bp 1 0.131986787660331 1 0.177875816822052 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARNTL ENSG00000133794 CDS Human protein_coding chr11:13399900 chr11:13399897 nonsynonymous SNV . 0 18 hm5C_associated_SNPs_35381 0 0 0 0 1 ARNTL chr11:13399884 3'AG 13399884 Downstream 14bp
chr11 13399896 13399896 1 + G A SKCM 13399900 + 13399880 13399920 41 GTAGGTGGCCCAAAGAGGACCCACCCCACTGTTCCAGGGAT GTAGGTGGCCCAAAGAAGACCCACCCCACTGTTCCAGGGAT < 41bp 1 0.106310693069055 1 0.159804254770279 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARNTL ENSG00000133794 CDS Human protein_coding chr11:13399900 chr11:13399896 nonsynonymous SNV 0.996 3 17 hm5C_associated_SNPs_35382 0 0 0 0 1 ARNTL chr11:13399884 3'AG 13399884 Downstream 13bp
chr9 133355802 133355802 1 + C T SKCM 133355811 + 133355791 133355831 41 CGTATTGACATCGTGGAGAACCGCTTCATTGGAATGAAGTC CGTATTGACATTGTGGAGAACCGCTTCATTGGAATGAAGTC < 41bp 1 0.105847774987565 1 0.070110023021698 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ASS1 ENSG00000130707 CDS Human protein_coding chr9:133355811 chr9:133355802 synonymous SNV . 0 12 hm5C_associated_SNPs_35386 1 0 1 0 2 ASS1 chr9:133355772 3'AG 133355772 Downstream 31bp
chr9 133355802 133355802 1 + C T SKCM 133355811 + 133355791 133355831 41 CGTATTGACATCGTGGAGAACCGCTTCATTGGAATGAAGTC CGTATTGACATTGTGGAGAACCGCTTCATTGGAATGAAGTC < 41bp 1 0.105847774987565 1 0.070110023021698 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ASS1 ENSG00000130707 CDS Human protein_coding chr9:133355811 chr9:133355802 synonymous SNV . 0 12 hm5C_associated_SNPs_35386 1 0 1 0 2 ASS1 chr9:133355836 5'GT 133355836 Upstream 35bp
chr20 3520922 3520922 1 + G A SKCM 3520926 + 3520906 3520946 41 GCTACAGAGTGTAGTTGGGACCATTTATATGTTTATGATGG GCTACAGAGTGTAGTTAGGACCATTTATATGTTTATGATGG < 41bp 1 0.0263182285419985 1 0.116140246391296 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATRN ENSG00000088812 CDS Human protein_coding chr20:3520926 chr20:3520922 stopgain 1.000 1 17 hm5C_associated_SNPs_35387 0 0 1 0 2 ATRN chr20:3520869 3'AG 3520869 Downstream 54bp
chr20 3520922 3520922 1 + G A SKCM 3520926 + 3520906 3520946 41 GCTACAGAGTGTAGTTGGGACCATTTATATGTTTATGATGG GCTACAGAGTGTAGTTAGGACCATTTATATGTTTATGATGG < 41bp 1 0.0263182285419985 1 0.116140246391296 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATRN ENSG00000088812 CDS Human protein_coding chr20:3520926 chr20:3520922 stopgain 1.000 1 17 hm5C_associated_SNPs_35387 0 0 1 0 2 ATRN chr20:3520982 5'GT 3520982 Upstream 61bp
chr17 7318297 7318297 1 + C T SKCM 7318290 + 7318270 7318310 41 GCCAGGGCTGTTCCAGAAGGCCATCGCCCAGAGTGGCACCG GCCAGGGCTGTTCCAGAAGGCCATCGCTCAGAGTGGCACCG < 41bp 1 0.0290279083562257 1 0.0801794528961182 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NLGN2 ENSG00000169992 CDS Human protein_coding chr17:7318290 chr17:7318297 synonymous SNV . 0 28 hm5C_associated_SNPs_35388 0 0 1 0 1 NLGN2 chr17:7318275 3'AG 7318275 Downstream 23bp
chr11 67047168 67047168 1 + C T SKCM 67047163 + 67047143 67047183 41 AGAAGCAGGTGCCTCCGGATCTCTTCCAGGTGTGTGCCTCC AGAAGCAGGTGCCTCCGGATCTCTTTCAGGTGTGTGCCTCC < 41bp 1 0.214613204493245 1 0.660452961921692 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67047163 chr11:67047168 synonymous SNV . 0 26 hm5C_associated_SNPs_35389 0 0 1 0 2 GRK2 chr11:67047097 3'AG 67047097 Downstream 72bp
chr11 67047168 67047168 1 + C T SKCM 67047163 + 67047143 67047183 41 AGAAGCAGGTGCCTCCGGATCTCTTCCAGGTGTGTGCCTCC AGAAGCAGGTGCCTCCGGATCTCTTTCAGGTGTGTGCCTCC < 41bp 1 0.214613204493245 1 0.660452961921692 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67047163 chr11:67047168 synonymous SNV . 0 26 hm5C_associated_SNPs_35389 0 0 1 0 2 GRK2 chr11:67047171 5'GT 67047171 Upstream 4bp
chr18 77063637 77063637 1 + G A SKCM 77063644 + 77063624 77063664 41 ATGATATTTAAGCGGCTGCACCTGGGCACCGTGTCCTATGG ATGATATTTAAGCAGCTGCACCTGGGCACCGTGTCCTATGG < 41bp 1 0.192464375804892 1 0.0965741574764252 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP9B ENSG00000166377 CDS Human protein_coding chr18:77063644 chr18:77063637 nonsynonymous SNV 0.971 2 14 hm5C_associated_SNPs_35390 0 0 0 0 2 ATP9B chr18:77063604 3'AG 77063604 Downstream 34bp
chr18 77063637 77063637 1 + G A SKCM 77063644 + 77063624 77063664 41 ATGATATTTAAGCGGCTGCACCTGGGCACCGTGTCCTATGG ATGATATTTAAGCAGCTGCACCTGGGCACCGTGTCCTATGG < 41bp 1 0.192464375804892 1 0.0965741574764252 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP9B ENSG00000166377 CDS Human protein_coding chr18:77063644 chr18:77063637 nonsynonymous SNV 0.971 2 14 hm5C_associated_SNPs_35390 0 0 0 0 2 ATP9B chr18:77063716 5'GT 77063716 Upstream 80bp
chr22 40415281 40415281 1 + G A SKCM 40415278 + 40415258 40415298 41 GTACATCATCCTGGACGAGGCAGGAGTGAAGTATTTCCTGG GTACATCATCCTGGACGAGGCAGAAGTGAAGTATTTCCTGG < 41bp 1 0.770294011721319 1 0.547964215278625 experiment 0.459411976557363 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control FAM83F ENSG00000133477 CDS Human protein_coding chr22:40415278 chr22:40415281 nonsynonymous SNV 0.799 4 24 hm5C_associated_SNPs_35391 0 0 0 0 1 FAM83F chr22:40415339 5'GT 40415339 Upstream 59bp
chr1 53416510 53416510 1 + G A SKCM 53416511 + 53416491 53416531 41 CAATGTCAACAATAACTGTGCTACTGGTTCTACTGCTTTGT CAATGTCAACAATAACTGTACTACTGGTTCTACTGCTTTGT < 41bp 1 0.216621429703091 1 0.037497341632843 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53416511 chr1:53416510 nonsynonymous SNV 0.946 3 20 hm5C_associated_SNPs_35392 0 0 1 1 2 SCP2 chr1:53416427 3'AG 53416427 Downstream 84bp
chr1 53416510 53416510 1 + G A SKCM 53416511 + 53416491 53416531 41 CAATGTCAACAATAACTGTGCTACTGGTTCTACTGCTTTGT CAATGTCAACAATAACTGTACTACTGGTTCTACTGCTTTGT < 41bp 1 0.216621429703091 1 0.037497341632843 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53416511 chr1:53416510 nonsynonymous SNV 0.946 3 20 hm5C_associated_SNPs_35392 0 0 1 1 2 SCP2 chr1:53416558 5'GT 53416558 Upstream 49bp
chr2 97464925 97464925 1 + C T SKCM 97464916 + 97464896 97464936 41 AGTACTACGCCCGCCATTACCTGTACACCCGAAATAAGCCG AGTACTACGCCCGCCATTACCTGTACACCTGAAATAAGCCG < 41bp 1 0.565515561950266 1 0.734992504119873 experiment 0.868968876099467 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CNNM4 ENSG00000158158 CDS Human protein_coding chr2:97464916 chr2:97464925 stopgain 0.997 1 30 hm5C_associated_SNPs_35393 0 0 0 0 1 CNNM4 chr2:97464963 5'GT 97464963 Upstream 39bp
chr13 99042345 99042345 1 + C T SKCM 99042342 + 99042322 99042362 41 AAACCAAAGCCCAAGCCCGTCCTCTTTAGCCGGGGGTCATC AAACCAAAGCCCAAGCCCGTCCTTTTTAGCCGGGGGTCATC < 41bp 1 0.0137735071117974 1 0.0239726901054382 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99042342 chr13:99042345 synonymous SNV . 0 24 hm5C_associated_SNPs_35394 0 0 1 0 1 FARP1 chr13:99042374 5'GT 99042374 Upstream 30bp
chr7 142459860 142459860 1 + A T SKCM 142459841 + 142459821 142459861 41 CCAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAA CCAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCTA < 41bp 1 0.378262408189797 1 0.0548449754714966 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459841 chr7:142459860 nonsynonymous SNV 0.829 5 40 hm5C_associated_SNPs_35395 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 19bp
chr7 142459860 142459860 1 + A T SKCM 142459842 + 142459822 142459862 41 CAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAC CAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCTAC < 41bp 1 0.51500150544384 1 0.0603898167610168 experiment 0.969996989112321 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459842 chr7:142459860 nonsynonymous SNV 0.829 5 39 hm5C_associated_SNPs_35396 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 19bp
chr7 142459860 142459860 1 + A T SKCM 142459844 + 142459824 142459864 41 GCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACAC GCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCTACAC < 41bp 1 0.498634649289583 1 0.0240944623947144 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459844 chr7:142459860 nonsynonymous SNV 0.829 5 37 hm5C_associated_SNPs_35397 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 19bp
chr7 142459860 142459860 1 + A T SKCM 142459847 + 142459827 142459867 41 ACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACACTGC ACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCTACACTGC < 41bp 1 0.766807259563076 1 0.342260420322418 experiment 0.466385480873848 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459847 chr7:142459860 nonsynonymous SNV 0.829 5 34 hm5C_associated_SNPs_35398 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 19bp
chr7 142459860 142459860 1 + A T SKCM 142459862 + 142459842 142459882 41 CTCATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGA CTCATCTCTGGCTGGGGCTACACTGCGAGCTCTGGCGGTGA < 41bp 1 0.323073871682512 1 0.128177881240845 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459862 chr7:142459860 nonsynonymous SNV 0.829 5 19 hm5C_associated_SNPs_35399 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 19bp
chr7 142459860 142459860 1 + A T SKCM 142459864 + 142459844 142459884 41 CATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGT CATCTCTGGCTGGGGCTACACTGCGAGCTCTGGCGGTGAGT < 41bp 1 0.735236747946451 1 0.365883827209473 experiment 0.529526504107098 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459864 chr7:142459860 nonsynonymous SNV 0.829 5 17 hm5C_associated_SNPs_35400 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 19bp
chr7 142459860 142459860 1 + A T SKCM 142459867 + 142459847 142459887 41 CTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGG CTCTGGCTGGGGCTACACTGCGAGCTCTGGCGGTGAGTGGG < 41bp 1 0.418078985439508 1 0.388345301151276 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459867 chr7:142459860 nonsynonymous SNV 0.829 5 14 hm5C_associated_SNPs_35401 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 19bp
chr7 142459860 142459860 1 + A T SKCM 142459871 + 142459851 142459891 41 GGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCC GGCTGGGGCTACACTGCGAGCTCTGGCGGTGAGTGGGACCC < 41bp 1 0.443312157399715 1 0.213525205850601 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459871 chr7:142459860 nonsynonymous SNV 0.829 5 10 hm5C_associated_SNPs_35402 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 19bp
chr7 142459860 142459860 1 + A T SKCM 142459873 + 142459853 142459893 41 CTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCCTT CTGGGGCTACACTGCGAGCTCTGGCGGTGAGTGGGACCCTT < 41bp 1 0.642623737201129 1 0.545746266841888 experiment 0.714752525597741 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459873 chr7:142459860 nonsynonymous SNV 0.829 5 8 hm5C_associated_SNPs_35403 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 19bp
chr7 142459860 142459860 1 + A T SKCM 142459877 + 142459857 142459897 41 GGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCCTTAGTC GGCTACACTGCGAGCTCTGGCGGTGAGTGGGACCCTTAGTC < 41bp 1 0.494973883710453 1 0.852516889572144 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459877 chr7:142459860 nonsynonymous SNV 0.829 5 4 hm5C_associated_SNPs_35404 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 19bp
chr3 183898715 183898715 1 + C T SKCM 183898730 + 183898710 183898750 41 ATCGTCGGAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTG ATCGTTGGAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTG < 41bp 1 0.778352192599965 1 0.721748888492584 experiment 0.443295614800071 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183898730 chr3:183898715 nonsynonymous SNV 0.993 4 6 hm5C_associated_SNPs_35405 0 0 1 0 2 AP2M1 chr3:183898637 3'AG 183898637 Downstream 79bp
chr3 183898715 183898715 1 + C T SKCM 183898730 + 183898710 183898750 41 ATCGTCGGAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTG ATCGTTGGAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTG < 41bp 1 0.778352192599965 1 0.721748888492584 experiment 0.443295614800071 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183898730 chr3:183898715 nonsynonymous SNV 0.993 4 6 hm5C_associated_SNPs_35405 0 0 1 0 2 AP2M1 chr3:183898772 5'GT 183898772 Upstream 58bp
chr8 38899578 38899578 1 + C T SKCM 38899577 + 38899557 38899597 41 CTGATGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTG CTGATGAAGCCTATAGTGCTCTCTCCTGTGGTAATAAGTTG < 41bp 1 0.228926674045028 1 0.0752636194229126 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38899577 chr8:38899578 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_35406 0 0 1 0 1 ADAM9 chr8:38899636 5'GT 38899636 Upstream 59bp
chr8 38899578 38899578 1 + C T SKCM 38899581 + 38899561 38899601 41 TGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTGGTGG TGAAGCCTATAGTGCTCTCTCCTGTGGTAATAAGTTGGTGG < 41bp 1 0.255622209382995 1 0.60075569152832 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38899581 chr8:38899578 nonsynonymous SNV 0.995 4 18 hm5C_associated_SNPs_35407 0 0 1 0 1 ADAM9 chr8:38899636 5'GT 38899636 Upstream 59bp
chr7 100151725 100151725 1 + C T SKCM 100151721 + 100151701 100151741 41 TCCTTCTCCTCCAAGCCCGTCAGTCAGTCTCACGCTCGGAC TCCTTCTCCTCCAAGCCCGTCAGTTAGTCTCACGCTCGGAC < 41bp 1 0.0629243079653942 1 0.0516005158424377 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGFG2 ENSG00000106351 CDS Human protein_coding chr7:100151721 chr7:100151725 stopgain 0.292 1 25 hm5C_associated_SNPs_35408 0 0 1 0 1 AGFG2 chr7:100151716 3'AG 100151716 Downstream 10bp
chr11 74329633 74329633 1 + C T SKCM 74329623 + 74329603 74329643 41 AGCTGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTT AGCTGCCGTCCCTAGAGCTCCTGCTGAATCTTCTTCGTCTT < 41bp 1 0.53463026563384 1 0.0826025009155273 experiment 0.93073946873232 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329623 chr11:74329633 synonymous SNV . 0 31 hm5C_associated_SNPs_35411 0 0 0 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 52bp
chr11 74329633 74329633 1 + C T SKCM 74329626 + 74329606 74329646 41 TGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCA TGCCGTCCCTAGAGCTCCTGCTGAATCTTCTTCGTCTTCCA < 41bp 1 0.683208080825499 1 0.275934338569641 experiment 0.633583838349002 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329626 chr11:74329633 synonymous SNV . 0 28 hm5C_associated_SNPs_35412 0 0 0 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 52bp
chr11 74329633 74329633 1 + C T SKCM 74329645 + 74329625 74329665 41 GCTGAATCCTCTTCGTCTTCCAAAAAGTTTGAGCAGTCACA GCTGAATCTTCTTCGTCTTCCAAAAAGTTTGAGCAGTCACA < 41bp 1 0.448819869977579 1 0.691096603870392 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329645 chr11:74329633 synonymous SNV . 0 9 hm5C_associated_SNPs_35413 0 0 0 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 52bp
chr7 91714906 91714906 1 + C T SKCM 91714891 + 91714871 91714911 41 TAGTGATGGAGAGGACCATTCTATTCAGCAGGTTTCAGAAC TAGTGATGGAGAGGACCATTCTATTCAGCAGGTTTTAGAAC < 41bp 1 0.169681732328315 1 0.178769946098328 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714891 chr7:91714906 nonsynonymous SNV 0.835 0 36 hm5C_associated_SNPs_35414 0 0 1 0 2 AKAP9 chr7:91714809 3'AG 91714809 Downstream 98bp
chr7 91714906 91714906 1 + C T SKCM 91714891 + 91714871 91714911 41 TAGTGATGGAGAGGACCATTCTATTCAGCAGGTTTCAGAAC TAGTGATGGAGAGGACCATTCTATTCAGCAGGTTTTAGAAC < 41bp 1 0.169681732328315 1 0.178769946098328 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714891 chr7:91714906 nonsynonymous SNV 0.835 0 36 hm5C_associated_SNPs_35414 0 0 1 0 2 AKAP9 chr7:91715000 5'GT 91715000 Upstream 95bp
chr7 91714906 91714906 1 + C T SKCM 91714896 + 91714876 91714916 41 ATGGAGAGGACCATTCTATTCAGCAGGTTTCAGAACCTTGG ATGGAGAGGACCATTCTATTCAGCAGGTTTTAGAACCTTGG < 41bp 1 0.72135885007746 1 0.419234365224838 experiment 0.55728229984508 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714896 chr7:91714906 nonsynonymous SNV 0.835 0 31 hm5C_associated_SNPs_35415 0 0 1 0 2 AKAP9 chr7:91714809 3'AG 91714809 Downstream 98bp
chr7 91714906 91714906 1 + C T SKCM 91714896 + 91714876 91714916 41 ATGGAGAGGACCATTCTATTCAGCAGGTTTCAGAACCTTGG ATGGAGAGGACCATTCTATTCAGCAGGTTTTAGAACCTTGG < 41bp 1 0.72135885007746 1 0.419234365224838 experiment 0.55728229984508 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714896 chr7:91714906 nonsynonymous SNV 0.835 0 31 hm5C_associated_SNPs_35415 0 0 1 0 2 AKAP9 chr7:91715000 5'GT 91715000 Upstream 95bp
chr7 91714906 91714906 1 + C T SKCM 91714912 + 91714892 91714932 41 TATTCAGCAGGTTTCAGAACCTTGGCTAGAAGAGAGAAAAG TATTCAGCAGGTTTTAGAACCTTGGCTAGAAGAGAGAAAAG < 41bp 1 0.149014537460457 1 0.119839519262314 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714912 chr7:91714906 nonsynonymous SNV 0.835 0 15 hm5C_associated_SNPs_35416 0 0 1 0 2 AKAP9 chr7:91714809 3'AG 91714809 Downstream 98bp
chr7 91714906 91714906 1 + C T SKCM 91714912 + 91714892 91714932 41 TATTCAGCAGGTTTCAGAACCTTGGCTAGAAGAGAGAAAAG TATTCAGCAGGTTTTAGAACCTTGGCTAGAAGAGAGAAAAG < 41bp 1 0.149014537460457 1 0.119839519262314 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714912 chr7:91714906 nonsynonymous SNV 0.835 0 15 hm5C_associated_SNPs_35416 0 0 1 0 2 AKAP9 chr7:91715000 5'GT 91715000 Upstream 95bp
chr7 91714906 91714906 1 + C T SKCM 91714917 + 91714897 91714937 41 AGCAGGTTTCAGAACCTTGGCTAGAAGAGAGAAAAGCTTAC AGCAGGTTTTAGAACCTTGGCTAGAAGAGAGAAAAGCTTAC < 41bp 1 0.385533366084324 1 0.479815363883972 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714917 chr7:91714906 nonsynonymous SNV 0.835 0 10 hm5C_associated_SNPs_35417 0 0 1 0 2 AKAP9 chr7:91714809 3'AG 91714809 Downstream 98bp
chr7 91714906 91714906 1 + C T SKCM 91714917 + 91714897 91714937 41 AGCAGGTTTCAGAACCTTGGCTAGAAGAGAGAAAAGCTTAC AGCAGGTTTTAGAACCTTGGCTAGAAGAGAGAAAAGCTTAC < 41bp 1 0.385533366084324 1 0.479815363883972 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714917 chr7:91714906 nonsynonymous SNV 0.835 0 10 hm5C_associated_SNPs_35417 0 0 1 0 2 AKAP9 chr7:91715000 5'GT 91715000 Upstream 95bp
chr7 73731903 73731903 1 + C T SKCM 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC AGCCCAGCGGCCTGAAGCCTCCCGGCCGTGGGGGGAAGCAC < 41bp 1 0.490549223990449 1 0.269927084445953 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731903 synonymous SNV . 0 20 hm5C_associated_SNPs_35418 0 0 0 0 2 CLIP2 chr7:73731810 3'AG 73731810 Downstream 94bp
chr7 73731903 73731903 1 + C T SKCM 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC AGCCCAGCGGCCTGAAGCCTCCCGGCCGTGGGGGGAAGCAC < 41bp 1 0.490549223990449 1 0.269927084445953 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731903 synonymous SNV . 0 20 hm5C_associated_SNPs_35418 0 0 0 0 2 CLIP2 chr7:73731997 5'GT 73731997 Upstream 95bp
chr7 73731903 73731903 1 + C T SKCM 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT GCCCAGCGGCCTGAAGCCTCCCGGCCGTGGGGGGAAGCACT < 41bp 1 0.165057274257724 1 0.381855040788651 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731903 synonymous SNV . 0 19 hm5C_associated_SNPs_35419 0 0 0 0 2 CLIP2 chr7:73731810 3'AG 73731810 Downstream 94bp
chr7 73731903 73731903 1 + C T SKCM 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT GCCCAGCGGCCTGAAGCCTCCCGGCCGTGGGGGGAAGCACT < 41bp 1 0.165057274257724 1 0.381855040788651 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731903 synonymous SNV . 0 19 hm5C_associated_SNPs_35419 0 0 0 0 2 CLIP2 chr7:73731997 5'GT 73731997 Upstream 95bp
chr7 73731903 73731903 1 + C T SKCM 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC CCCAGCGGCCTGAAGCCTCCCGGCCGTGGGGGGAAGCACTC < 41bp 1 0.490749762625719 1 0.421623945236206 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731903 synonymous SNV . 0 18 hm5C_associated_SNPs_35420 0 0 0 0 2 CLIP2 chr7:73731810 3'AG 73731810 Downstream 94bp
chr7 73731903 73731903 1 + C T SKCM 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC CCCAGCGGCCTGAAGCCTCCCGGCCGTGGGGGGAAGCACTC < 41bp 1 0.490749762625719 1 0.421623945236206 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731903 synonymous SNV . 0 18 hm5C_associated_SNPs_35420 0 0 0 0 2 CLIP2 chr7:73731997 5'GT 73731997 Upstream 95bp
chr1 23236961 23236961 1 + G A SKCM 23236971 + 23236951 23236991 41 TGGACTGTTGGCAGAAGGACCGCAACCACCGGCCCAAGTTC TGGACTGTTGACAGAAGGACCGCAACCACCGGCCCAAGTTC < 41bp 1 0.481018421952273 1 0.451445817947388 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23236971 chr1:23236961 stopgain 1.000 1 11 hm5C_associated_SNPs_35421 0 0 0 0 1 EPHB2 chr1:23236875 3'AG 23236875 Downstream 87bp
chr8 32613921 32613921 1 + G A SKCM 32613925 + 32613905 32613945 41 CCTTTCTTATGTCCAGGAAACAGCGGAAAAAGCTGCATGAC CCTTTCTTATGTCCAGAAAACAGCGGAAAAAGCTGCATGAC < 41bp 1 0.607854964373818 1 0.749634981155396 experiment 0.784290071252364 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NRG1 ENSG00000157168 CDS Human protein_coding chr8:32613925 chr8:32613921 synonymous SNV . 0 17 hm5C_associated_SNPs_35423 0 0 0 0 1 NRG1 chr8:32613921 3'AG 32613921 Downstream 1bp
chr11 57575908 57575908 1 + C T SKCM 57575904 + 57575884 57575924 41 CTCTGCGTCAAGAGAAGGCTCTTTCTGCCATAGCTGACCTC CTCTGCGTCAAGAGAAGGCTCTTTTTGCCATAGCTGACCTC < 41bp 1 0.117335575345385 1 0.0563799440860748 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57575904 chr11:57575908 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_35428 0 0 1 0 1 CTNND1 chr11:57575862 3'AG 57575862 Downstream 47bp
chr19 19645922 19645922 1 + G A SKCM 19645936 + 19645916 19645956 41 CAGTGGGGCTGGTCTGTGCCCGGCACCTGCGGGTGTTTGTA CAGTGGAGCTGGTCTGTGCCCGGCACCTGCGGGTGTTTGTA < 41bp 1 0.774337757096558 1 0.506467819213867 experiment 0.451324485806883 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control YJEFN3 ENSG00000250067;ENSG00000258674 CDS Human other chr19:19645936 chr19:19645922 nonsynonymous SNV 0.996 4 7 hm5C_associated_SNPs_35430 0 0 1 0 1 YJEFN3 chr19:19645843 3'AG 19645843 Downstream 80bp
chr11 65824770 65824770 1 + C T SKCM 65824781 + 65824761 65824801 41 GCCCCACTCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCC GCCCCACTCTTACAGTTTTGCCCATGGGAGCCCCTGTTCCC < 41bp 1 0.388695780454455 1 0.103326559066772 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824781 chr11:65824770 nonsynonymous SNV 0.978 0 10 hm5C_associated_SNPs_35431 0 0 1 0 2 SF3B2 chr11:65824737 3'AG 65824737 Downstream 34bp
chr11 65824770 65824770 1 + C T SKCM 65824781 + 65824761 65824801 41 GCCCCACTCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCC GCCCCACTCTTACAGTTTTGCCCATGGGAGCCCCTGTTCCC < 41bp 1 0.388695780454455 1 0.103326559066772 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824781 chr11:65824770 nonsynonymous SNV 0.978 0 10 hm5C_associated_SNPs_35431 0 0 1 0 2 SF3B2 chr11:65824846 5'GT 65824846 Upstream 77bp
chr11 65824770 65824770 1 + C T SKCM 65824782 + 65824762 65824802 41 CCCCACTCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCCC CCCCACTCTTACAGTTTTGCCCATGGGAGCCCCTGTTCCCC < 41bp 1 0.307935376179939 1 0.199478954076767 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824782 chr11:65824770 nonsynonymous SNV 0.978 0 9 hm5C_associated_SNPs_35432 0 0 1 0 2 SF3B2 chr11:65824737 3'AG 65824737 Downstream 34bp
chr11 65824770 65824770 1 + C T SKCM 65824782 + 65824762 65824802 41 CCCCACTCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCCC CCCCACTCTTACAGTTTTGCCCATGGGAGCCCCTGTTCCCC < 41bp 1 0.307935376179939 1 0.199478954076767 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824782 chr11:65824770 nonsynonymous SNV 0.978 0 9 hm5C_associated_SNPs_35432 0 0 1 0 2 SF3B2 chr11:65824846 5'GT 65824846 Upstream 77bp
chr1 23236960 23236960 1 + G A SKCM 23236971 + 23236951 23236991 41 TGGACTGTTGGCAGAAGGACCGCAACCACCGGCCCAAGTTC TGGACTGTTAGCAGAAGGACCGCAACCACCGGCCCAAGTTC < 41bp 1 0.44295402861837 1 0.383535772562027 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23236971 chr1:23236960 stopgain 1.000 1 10 hm5C_associated_SNPs_35433 0 0 0 0 1 EPHB2 chr1:23236875 3'AG 23236875 Downstream 86bp
chr11 74329632 74329632 1 + C T SKCM 74329614 + 74329594 74329634 41 ACAATGTGCAGCTGCCGTCCCTAGAGCTCCTGCTGAATCCT ACAATGTGCAGCTGCCGTCCCTAGAGCTCCTGCTGAATTCT < 41bp 1 0.765501243021898 1 0.406856060028076 experiment 0.468997513956203 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329614 chr11:74329632 nonsynonymous SNV 0.994 0 39 hm5C_associated_SNPs_35434 0 0 0 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 51bp
chr11 74329632 74329632 1 + C T SKCM 74329623 + 74329603 74329643 41 AGCTGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTT AGCTGCCGTCCCTAGAGCTCCTGCTGAATTCTCTTCGTCTT < 41bp 1 0.554888030119554 1 0.146553546190262 experiment 0.890223939760892 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329623 chr11:74329632 nonsynonymous SNV 0.994 0 30 hm5C_associated_SNPs_35435 0 0 0 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 51bp
chr11 74329632 74329632 1 + C T SKCM 74329626 + 74329606 74329646 41 TGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCA TGCCGTCCCTAGAGCTCCTGCTGAATTCTCTTCGTCTTCCA < 41bp 1 0.751174181054095 1 0.398614495992661 experiment 0.497651637891809 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329626 chr11:74329632 nonsynonymous SNV 0.994 0 27 hm5C_associated_SNPs_35436 0 0 0 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 51bp
chr11 74329632 74329632 1 + C T SKCM 74329633 + 74329613 74329653 41 CCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCAAAAAGTT CCTAGAGCTCCTGCTGAATTCTCTTCGTCTTCCAAAAAGTT < 41bp 1 0.170979452223797 1 0.153605729341507 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329633 chr11:74329632 nonsynonymous SNV 0.994 0 20 hm5C_associated_SNPs_35437 0 0 0 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 51bp
chr11 74329632 74329632 1 + C T SKCM 74329645 + 74329625 74329665 41 GCTGAATCCTCTTCGTCTTCCAAAAAGTTTGAGCAGTCACA GCTGAATTCTCTTCGTCTTCCAAAAAGTTTGAGCAGTCACA < 41bp 1 0.484975710150255 1 0.717524528503418 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329645 chr11:74329632 nonsynonymous SNV 0.994 0 8 hm5C_associated_SNPs_35438 0 0 0 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 51bp
chr19 46202120 46202120 1 + C T SKCM 46202126 + 46202106 46202146 41 CTACAGCCACTTCCCTCGCACGGTCCGCTGGTTCCATCGGC CTACAGCCACTTCCTTCGCACGGTCCGCTGGTTCCATCGGC < 41bp 1 0.133174102736588 1 0.606796681880951 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control QPCTL ENSG00000011478 CDS Human protein_coding chr19:46202126 chr19:46202120 nonsynonymous SNV 0.634 0 15 hm5C_associated_SNPs_35443 0 0 1 0 2 QPCTL chr19:46202059 3'AG 46202059 Downstream 62bp
chr19 46202120 46202120 1 + C T SKCM 46202126 + 46202106 46202146 41 CTACAGCCACTTCCCTCGCACGGTCCGCTGGTTCCATCGGC CTACAGCCACTTCCTTCGCACGGTCCGCTGGTTCCATCGGC < 41bp 1 0.133174102736588 1 0.606796681880951 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control QPCTL ENSG00000011478 CDS Human protein_coding chr19:46202126 chr19:46202120 nonsynonymous SNV 0.634 0 15 hm5C_associated_SNPs_35443 0 0 1 0 2 QPCTL chr19:46202158 5'GT 46202158 Upstream 39bp
chr7 142458429 142458429 1 + G A SKCM 142458409 + 142458389 142458429 41 TCCCATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATG TCCCATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATA < 41bp 1 0.0582544164602052 1 0.0958439409732819 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458409 chr7:142458429 nonsynonymous SNV 0.871 5 41 hm5C_associated_SNPs_35444 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 24bp
chr7 142458429 142458429 1 + G A SKCM 142458412 + 142458392 142458432 41 CATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACA CATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATAACA < 41bp 1 0.0184634465822006 1 0.254642307758331 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458412 chr7:142458429 nonsynonymous SNV 0.871 5 38 hm5C_associated_SNPs_35445 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 24bp
chr7 142458429 142458429 1 + G A SKCM 142458413 + 142458393 142458433 41 ATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAA ATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATAACAA < 41bp 1 0.049583649294394 1 0.189281851053238 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458413 chr7:142458429 nonsynonymous SNV 0.871 5 37 hm5C_associated_SNPs_35446 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 24bp
chr7 142458429 142458429 1 + G A SKCM 142458414 + 142458394 142458434 41 TCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAG TCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATAACAAG < 41bp 1 0.0255795551390057 1 0.1535624563694 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458414 chr7:142458429 nonsynonymous SNV 0.871 5 36 hm5C_associated_SNPs_35447 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 24bp
chr7 142458429 142458429 1 + G A SKCM 142458415 + 142458395 142458435 41 CTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGA CTCCACTCCAGTTGCTGCCCCCTTTGATGATGATAACAAGA < 41bp 1 0.00275225025977448 1 0.0980543494224548 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458415 chr7:142458429 nonsynonymous SNV 0.871 5 35 hm5C_associated_SNPs_35448 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 24bp
chr7 142458429 142458429 1 + G A SKCM 142458416 + 142458396 142458436 41 TCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGAT TCCACTCCAGTTGCTGCCCCCTTTGATGATGATAACAAGAT < 41bp 1 0.0421925823846997 1 0.0850617289543152 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458416 chr7:142458429 nonsynonymous SNV 0.871 5 34 hm5C_associated_SNPs_35449 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 24bp
chr7 142458429 142458429 1 + G A SKCM 142458431 + 142458411 142458451 41 GCCCCCTTTGATGATGATGACAAGATCGTTGGGGGCTACAA GCCCCCTTTGATGATGATAACAAGATCGTTGGGGGCTACAA < 41bp 1 0.760217171999417 1 0.620720267295837 experiment 0.479565656001167 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458431 chr7:142458429 nonsynonymous SNV 0.871 5 19 hm5C_associated_SNPs_35450 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 24bp
chr7 142458429 142458429 1 + G A SKCM 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATAACAAGATCGTTGGGGGCTACAACTGTGA < 41bp 1 0.165978874445195 1 0.109288901090622 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458429 nonsynonymous SNV 0.871 5 13 hm5C_associated_SNPs_35451 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 24bp
chr7 142458429 142458429 1 + G A SKCM 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATAACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC < 41bp 1 0.334308375645733 1 0.532254040241241 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458429 nonsynonymous SNV 0.871 5 4 hm5C_associated_SNPs_35452 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 24bp
chr7 142458429 142458429 1 + G A SKCM 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT AACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT < 41bp 1 0.168853892623597 1 0.262254357337952 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458429 nonsynonymous SNV 0.871 5 1 hm5C_associated_SNPs_35453 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 24bp
chr2 192141644 192141644 1 + C T SKCM 192141649 + 192141629 192141669 41 AAATGGAGGTGAAAACCTCACTTCTGGACAATATGATTGGA AAATGGAGGTGAAAATCTCACTTCTGGACAATATGATTGGA < 41bp 1 0.232869853868872 1 0.163124173879623 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MYO1B ENSG00000128641 CDS Human protein_coding chr2:192141649 chr2:192141644 nonsynonymous SNV 0.886 2 16 hm5C_associated_SNPs_35454 0 0 1 0 1 MYO1B chr2:192141613 3'AG 192141613 Downstream 32bp
chr1 161132151 161132151 1 + G A SKCM 161132159 + 161132139 161132179 41 AAGAGGTGCCTGGAGGAGGCCGAGCCCAAGAGCTCACTGAA AAGAGGTGCCTGAAGGAGGCCGAGCCCAAGAGCTCACTGAA < 41bp 1 0.366460177609913 1 0.659542858600616 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161132159 chr1:161132151 nonsynonymous SNV 1.000 0 13 hm5C_associated_SNPs_35455 0 0 1 0 2 USP21 chr1:161132060 3'AG 161132060 Downstream 92bp
chr1 161132151 161132151 1 + G A SKCM 161132159 + 161132139 161132179 41 AAGAGGTGCCTGGAGGAGGCCGAGCCCAAGAGCTCACTGAA AAGAGGTGCCTGAAGGAGGCCGAGCCCAAGAGCTCACTGAA < 41bp 1 0.366460177609913 1 0.659542858600616 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161132159 chr1:161132151 nonsynonymous SNV 1.000 0 13 hm5C_associated_SNPs_35455 0 0 1 0 2 USP21 chr1:161132180 5'GT 161132180 Upstream 30bp
chr2 70164477 70164477 1 + G A SKCM 70164486 + 70164466 70164506 41 AGGATCCGGATGGACAGCATCGGCTCCACCGTCTCCTCGGA AGGATCCGGATAGACAGCATCGGCTCCACCGTCTCCTCGGA < 41bp 1 0.718459062772226 1 0.512722134590149 experiment 0.563081874455548 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MXD1 ENSG00000059728 CDS Human protein_coding chr2:70164486 chr2:70164477 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_35457 0 0 1 0 1 MXD1 chr2:70164526 5'GT 70164526 Upstream 50bp
chr10 118306862 118306862 1 + G A SKCM 118306849 + 118306829 118306869 41 CTCGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTAC CTCGGCTGCTTCAGTGATGACTCCCCATGGTCAAGAATTAC < 41bp 1 0.28616276564587 1 0.0694632828235626 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306849 chr10:118306862 nonsynonymous SNV 0.862 4 34 hm5C_associated_SNPs_35458 0 0 0 0 2 PNLIP chr10:118306806 3'AG 118306806 Downstream 57bp
chr10 118306862 118306862 1 + G A SKCM 118306849 + 118306829 118306869 41 CTCGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTAC CTCGGCTGCTTCAGTGATGACTCCCCATGGTCAAGAATTAC < 41bp 1 0.28616276564587 1 0.0694632828235626 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306849 chr10:118306862 nonsynonymous SNV 0.862 4 34 hm5C_associated_SNPs_35458 0 0 0 0 2 PNLIP chr10:118306960 5'GT 118306960 Upstream 99bp
chr10 118306862 118306862 1 + G A SKCM 118306851 + 118306831 118306871 41 CGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGG CGGCTGCTTCAGTGATGACTCCCCATGGTCAAGAATTACGG < 41bp 1 0.68841249510243 1 0.287232339382172 experiment 0.623175009795141 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306851 chr10:118306862 nonsynonymous SNV 0.862 4 32 hm5C_associated_SNPs_35459 0 0 0 0 2 PNLIP chr10:118306806 3'AG 118306806 Downstream 57bp
chr10 118306862 118306862 1 + G A SKCM 118306851 + 118306831 118306871 41 CGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGG CGGCTGCTTCAGTGATGACTCCCCATGGTCAAGAATTACGG < 41bp 1 0.68841249510243 1 0.287232339382172 experiment 0.623175009795141 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306851 chr10:118306862 nonsynonymous SNV 0.862 4 32 hm5C_associated_SNPs_35459 0 0 0 0 2 PNLIP chr10:118306960 5'GT 118306960 Upstream 99bp
chr10 118306862 118306862 1 + G A SKCM 118306853 + 118306833 118306873 41 GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAA GCTGCTTCAGTGATGACTCCCCATGGTCAAGAATTACGGAA < 41bp 1 0.277567896010452 1 0.237743526697159 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306853 chr10:118306862 nonsynonymous SNV 0.862 4 30 hm5C_associated_SNPs_35460 0 0 0 0 2 PNLIP chr10:118306806 3'AG 118306806 Downstream 57bp
chr10 118306862 118306862 1 + G A SKCM 118306853 + 118306833 118306873 41 GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAA GCTGCTTCAGTGATGACTCCCCATGGTCAAGAATTACGGAA < 41bp 1 0.277567896010452 1 0.237743526697159 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306853 chr10:118306862 nonsynonymous SNV 0.862 4 30 hm5C_associated_SNPs_35460 0 0 0 0 2 PNLIP chr10:118306960 5'GT 118306960 Upstream 99bp
chr10 118306862 118306862 1 + G A SKCM 118306854 + 118306834 118306874 41 CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAAA CTGCTTCAGTGATGACTCCCCATGGTCAAGAATTACGGAAA < 41bp 1 0.547814259651308 1 0.54872453212738 experiment 0.904371480697384 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306854 chr10:118306862 nonsynonymous SNV 0.862 4 29 hm5C_associated_SNPs_35461 0 0 0 0 2 PNLIP chr10:118306806 3'AG 118306806 Downstream 57bp
chr10 118306862 118306862 1 + G A SKCM 118306854 + 118306834 118306874 41 CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAAA CTGCTTCAGTGATGACTCCCCATGGTCAAGAATTACGGAAA < 41bp 1 0.547814259651308 1 0.54872453212738 experiment 0.904371480697384 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306854 chr10:118306862 nonsynonymous SNV 0.862 4 29 hm5C_associated_SNPs_35461 0 0 0 0 2 PNLIP chr10:118306960 5'GT 118306960 Upstream 99bp
chr1 155288061 155288061 1 + C T SKCM 155288044 + 155288024 155288064 41 TGAAGCTCTATTGCCGGGAGCAGCCCTATTACCTGAACCTG TGAAGCTCTATTGCCGGGAGCAGCCCTATTACCTGAATCTG < 41bp 1 0.246411179516687 1 0.172120302915573 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155288044 chr1:155288061 synonymous SNV . 0 38 hm5C_associated_SNPs_35463 0 0 1 0 1 FDPS chr1:155288082 5'GT 155288082 Upstream 22bp
chr20 1902320 1902320 1 + C T SKCM 1902319 + 1902299 1902339 41 ACGTCACCTTGCAGGGGGACCCTCTTCGTGGGACTGCCAAC ACGTCACCTTGCAGGGGGACCTTCTTCGTGGGACTGCCAAC < 41bp 1 0.1827126068374 1 0.0177505910396576 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1902319 chr20:1902320 nonsynonymous SNV 0.279 1 22 hm5C_associated_SNPs_35466 0 0 0 0 1 SIRPA chr20:1902358 5'GT 1902358 Upstream 39bp
chr20 57480491 57480491 1 + C A SKCM 57480488 + 57480468 57480508 41 GAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA GAGGATGAAGGAGTGCGTGCCTGATACGAACGCTCCAACGA < 41bp 1 0.42268337931938 1 0.166440695524216 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480488 chr20:57480491 stopgain 0.987 1 24 hm5C_associated_SNPs_35467 0 0 1 2 2 GNAS chr20:57480438 3'AG 57480438 Downstream 54bp
chr20 57480491 57480491 1 + C A SKCM 57480488 + 57480468 57480508 41 GAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA GAGGATGAAGGAGTGCGTGCCTGATACGAACGCTCCAACGA < 41bp 1 0.42268337931938 1 0.166440695524216 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480488 chr20:57480491 stopgain 0.987 1 24 hm5C_associated_SNPs_35467 0 0 1 2 2 GNAS chr20:57480535 5'GT 57480535 Upstream 45bp
chr10 103919292 103919292 1 + G A SKCM 103919298 + 103919278 103919318 41 CCAGTGACGAGGAAGAGGAGCAAAAAAAACCCATGAAAAAT CCAGTGACGAGGAAAAGGAGCAAAAAAAACCCATGAAAAAT < 41bp 1 0.546068684939631 1 0.576017022132874 experiment 0.907862630120738 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919298 chr10:103919292 nonsynonymous SNV 0.863 1 15 hm5C_associated_SNPs_35469 0 0 1 0 1 NOLC1 chr10:103919325 5'GT 103919325 Upstream 34bp
chr7 138944071 138944071 1 + G A SKCM 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGAGGAAAAG < 41bp 1 0.472231861656889 1 0.595632433891296 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944071 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_35470 0 0 1 0 2 UBN2 chr7:138944013 3'AG 138944013 Downstream 59bp
chr7 138944071 138944071 1 + G A SKCM 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGAGGAAAAG < 41bp 1 0.472231861656889 1 0.595632433891296 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944071 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_35470 0 0 1 0 2 UBN2 chr7:138944116 5'GT 138944116 Upstream 46bp
chr2 220505217 220505217 1 + C T SKCM 220505231 + 220505211 220505251 41 ATCTTCCTGTACATGGGGGTCACGTCCCTGTCTGGTATCCA ATCTTCTTGTACATGGGGGTCACGTCCCTGTCTGGTATCCA < 41bp 1 0.232120069531822 1 0.0348409414291382 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220505231 chr2:220505217 synonymous SNV . 0 7 hm5C_associated_SNPs_35471 0 0 0 0 1 SLC4A3 chr2:220505152 3'AG 220505152 Downstream 66bp
chr1 109814029 109814029 1 + C T SKCM 109814010 + 109813990 109814030 41 GCCTGTCCCTATCCCCAGCTCGGGCCTGCAGCCCTCCTTCG GCCTGTCCCTATCCCCAGCTCGGGCCTGCAGCCCTCCTTTG < 41bp 1 0.467989215683033 1 0.726339817047119 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109814010 chr1:109814029 synonymous SNV . 0 40 hm5C_associated_SNPs_35472 0 0 1 0 1 CELSR2 chr1:109814008 3'AG 109814008 Downstream 22bp
chr2 32773047 32773047 1 + G A SKCM 32773028 + 32773008 32773048 41 CTTCTGGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAGG CTTCTGGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAAG < 41bp 1 0.169326864577843 1 0.517087936401367 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773028 chr2:32773047 nonsynonymous SNV 0.998 2 40 hm5C_associated_SNPs_35475 0 0 0 0 1 BIRC6 chr2:32773081 5'GT 32773081 Upstream 35bp
chr2 32773047 32773047 1 + G A SKCM 32773033 + 32773013 32773053 41 GGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAGGCTGGA GGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAAGCTGGA < 41bp 1 0.196286677897664 1 0.127960860729218 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773033 chr2:32773047 nonsynonymous SNV 0.998 2 35 hm5C_associated_SNPs_35476 0 0 0 0 1 BIRC6 chr2:32773081 5'GT 32773081 Upstream 35bp
chr2 32773047 32773047 1 + G A SKCM 32773043 + 32773023 32773063 41 TGGAACAAGCCTTAACTAAGCAAAGGCTGGAAGAGGAACAT TGGAACAAGCCTTAACTAAGCAAAAGCTGGAAGAGGAACAT < 41bp 1 0.255131833169323 1 0.588387191295624 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773043 chr2:32773047 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_35477 0 0 0 0 1 BIRC6 chr2:32773081 5'GT 32773081 Upstream 35bp
chr20 47567936 47567936 1 + T A SKCM 47567952 + 47567932 47567972 41 AGAATTGTTGAAACCATTTGCAGTTGTTTTCAGGGCCCTCA AGAAATGTTGAAACCATTTGCAGTTGTTTTCAGGGCCCTCA < 41bp 1 0.296461640503191 1 0.416374683380127 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47567952 chr20:47567936 nonsynonymous SNV 0.999 4 5 hm5C_associated_SNPs_35478 0 0 1 0 2 ARFGEF2 chr20:47567860 3'AG 47567860 Downstream 77bp
chr20 47567936 47567936 1 + T A SKCM 47567952 + 47567932 47567972 41 AGAATTGTTGAAACCATTTGCAGTTGTTTTCAGGGCCCTCA AGAAATGTTGAAACCATTTGCAGTTGTTTTCAGGGCCCTCA < 41bp 1 0.296461640503191 1 0.416374683380127 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47567952 chr20:47567936 nonsynonymous SNV 0.999 4 5 hm5C_associated_SNPs_35478 0 0 1 0 2 ARFGEF2 chr20:47568006 5'GT 47568006 Upstream 71bp
chr7 130020994 130020994 1 + G A SKCM 130021005 + 130020985 130021025 41 AAGGTGAAGGAGCTGGAGGACCTGGAGCACCTGCAGGTCAG AAGGTGAAGAAGCTGGAGGACCTGGAGCACCTGCAGGTCAG < 41bp 1 0.355374865747476 1 0.100713729858398 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021005 chr7:130020994 nonsynonymous SNV 1.000 0 10 hm5C_associated_SNPs_35481 0 0 0 0 2 CPA1 chr7:130020939 3'AG 130020939 Downstream 56bp
chr7 130020994 130020994 1 + G A SKCM 130021005 + 130020985 130021025 41 AAGGTGAAGGAGCTGGAGGACCTGGAGCACCTGCAGGTCAG AAGGTGAAGAAGCTGGAGGACCTGGAGCACCTGCAGGTCAG < 41bp 1 0.355374865747476 1 0.100713729858398 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021005 chr7:130020994 nonsynonymous SNV 1.000 0 10 hm5C_associated_SNPs_35481 0 0 0 0 2 CPA1 chr7:130021020 5'GT 130021020 Upstream 27bp
chr7 130020994 130020994 1 + G A SKCM 130021012 + 130020992 130021032 41 AGGAGCTGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGG AGAAGCTGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGG < 41bp 1 0.286563501726909 1 0.208452641963959 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021012 chr7:130020994 nonsynonymous SNV 1.000 0 3 hm5C_associated_SNPs_35482 0 0 0 0 2 CPA1 chr7:130020939 3'AG 130020939 Downstream 56bp
chr7 130020994 130020994 1 + G A SKCM 130021012 + 130020992 130021032 41 AGGAGCTGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGG AGAAGCTGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGG < 41bp 1 0.286563501726909 1 0.208452641963959 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021012 chr7:130020994 nonsynonymous SNV 1.000 0 3 hm5C_associated_SNPs_35482 0 0 0 0 2 CPA1 chr7:130021020 5'GT 130021020 Upstream 27bp
chr7 130020994 130020994 1 + G A SKCM 130021014 + 130020994 130021034 41 GAGCTGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGGGA AAGCTGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGGGA < 41bp 1 0.137869021336279 1 0.199990659952164 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021014 chr7:130020994 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_35483 0 0 0 0 2 CPA1 chr7:130020939 3'AG 130020939 Downstream 56bp
chr7 130020994 130020994 1 + G A SKCM 130021014 + 130020994 130021034 41 GAGCTGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGGGA AAGCTGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGGGA < 41bp 1 0.137869021336279 1 0.199990659952164 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021014 chr7:130020994 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_35483 0 0 0 0 2 CPA1 chr7:130021020 5'GT 130021020 Upstream 27bp
chr22 30403281 30403281 1 + G A SKCM 30403290 + 30403270 30403310 41 ACTTTCCCAATGGGGGAGACCTTTCTGACGTGGAGTTCGGT ACTTTCCCAATAGGGGAGACCTTTCTGACGTGGAGTTCGGT < 41bp 1 0.0180729557735528 1 0.0812144577503204 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MTMR3 ENSG00000100330 CDS Human protein_coding chr22:30403290 chr22:30403281 nonsynonymous SNV 0.980 2 12 hm5C_associated_SNPs_35485 0 0 1 0 1 MTMR3 chr22:30403308 5'GT 30403308 Upstream 28bp
chr7 892478 892478 1 + C T SKCM 892492 + 892472 892512 41 CAATTTCTTTTCGTTCTTGCCCGTGTTGAACTGGGCAAGCA CAATTTTTTTTCGTTCTTGCCCGTGTTGAACTGGGCAAGCA < 41bp 1 0.255751624078082 1 0.0706012845039368 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SUN1 ENSG00000164828 CDS Human protein_coding chr7:892492 chr7:892478 synonymous SNV . 0 7 hm5C_associated_SNPs_35487 0 0 1 0 2 SUN1 chr7:892447 3'AG 892447 Downstream 32bp
chr7 892478 892478 1 + C T SKCM 892492 + 892472 892512 41 CAATTTCTTTTCGTTCTTGCCCGTGTTGAACTGGGCAAGCA CAATTTTTTTTCGTTCTTGCCCGTGTTGAACTGGGCAAGCA < 41bp 1 0.255751624078082 1 0.0706012845039368 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SUN1 ENSG00000164828 CDS Human protein_coding chr7:892492 chr7:892478 synonymous SNV . 0 7 hm5C_associated_SNPs_35487 0 0 1 0 2 SUN1 chr7:892450 3'AG 892450 Downstream 29bp
chr22 38321962 38321962 1 + C T SKCM 38321955 + 38321935 38321975 41 GGGCCACCCGGAGTCCACACCCAAGTCCCTGCACCCCTGGT GGGCCACCCGGAGTCCACACCCAAGTCTCTGCACCCCTGGT < 41bp 1 0.152533170804728 1 0.244987159967422 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38321955 chr22:38321962 synonymous SNV . 0 28 hm5C_associated_SNPs_35488 0 0 0 0 1 MICALL1 chr22:38322050 5'GT 38322050 Upstream 89bp
chr11 20077471 20077471 1 + G T SKCM 20077463 + 20077443 20077483 41 CTGGATGAGAAGAGCAGAACCATGAGCCGTTCAGGCTCATT CTGGATGAGAAGAGCAGAACCATGAGCCTTTCAGGCTCATT < 41bp 1 0.367042211963463 1 0.472417086362839 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74775;RNA-BisSeq;SNB19;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:20077463 chr11:20077471 nonsynonymous SNV 0.956 4 29 hm5C_associated_SNPs_35489 0 0 0 0 1 NAV2 chr11:20077503 5'GT 20077503 Upstream 33bp
chr10 103310563 103310563 1 + C T SKCM 103310555 + 103310535 103310575 41 TCTGGGACTTCCTAAATGATCCAGCTGCCCAAGCTGAACCC TCTGGGACTTCCTAAATGATCCAGCTGCTCAAGCTGAACCC < 41bp 1 0.361051576867088 1 0.407195329666138 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BTRC ENSG00000166167 CDS Human protein_coding chr10:103310555 chr10:103310563 synonymous SNV . 0 29 hm5C_associated_SNPs_35490 0 0 1 0 1 BTRC chr10:103310648 5'GT 103310648 Upstream 86bp
chr16 601532 601532 1 + C T SKCM 601540 + 601520 601560 41 GGCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGC GGCTCCGAAACCTGTGGGGCCGTTTCTCCTGGAACGGCAGC < 41bp 1 0.0267018287000939 1 0.0684864521026611 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601540 chr16:601532 nonsynonymous SNV 0.975 5 13 hm5C_associated_SNPs_35491 0 0 1 0 1 CAPN15 chr16:601512 3'AG 601512 Downstream 21bp
chr16 601532 601532 1 + C T SKCM 601547 + 601527 601567 41 AAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGCTGGTCCG AAACCTGTGGGGCCGTTTCTCCTGGAACGGCAGCTGGTCCG < 41bp 1 0.505773913572703 1 0.896170675754547 experiment 0.988452172854594 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601547 chr16:601532 nonsynonymous SNV 0.975 5 6 hm5C_associated_SNPs_35492 0 0 1 0 1 CAPN15 chr16:601512 3'AG 601512 Downstream 21bp
chr11 33667283 33667283 1 + C G SKCM 33667280 + 33667260 33667300 41 ACATTGACAGAGTTCCTGAGCCCCGGGGCTATTCCAGGTCT ACATTGACAGAGTTCCTGAGCCCGGGGGCTATTCCAGGTCT < 41bp 1 0.422026060243884 1 0.254817426204681 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33667280 chr11:33667283 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_35493 0 0 0 0 1 KIAA1549L chr11:33667232 3'AG 33667232 Downstream 52bp
chr22 41735895 41735895 1 + G A SKCM 41735900 + 41735880 41735920 41 CCCGTGTTCCCCGGCGGGACCCCACTGCTACCACCTGTGGT CCCGTGTTCCCCGGCAGGACCCCACTGCTACCACCTGTGGT < 41bp 1 0.0670512619750958 1 0.0646528899669647 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41735900 chr22:41735895 nonsynonymous SNV 0.987 3 16 hm5C_associated_SNPs_35494 0 0 1 0 1 ZC3H7B chr22:41735820 3'AG 41735820 Downstream 76bp
chr1 7796526 7796526 1 + C T SKCM 7796544 + 7796524 7796564 41 TTCCGCGGAATGACCCTACTCCACCTGGCCGCTGCCCAGGG TTTCGCGGAATGACCCTACTCCACCTGGCCGCTGCCCAGGG < 41bp 1 0.297821045438357 1 0.323149740695953 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMTA1 ENSG00000171735 CDS Human protein_coding chr1:7796544 chr1:7796526 synonymous SNV . 0 3 hm5C_associated_SNPs_35495 0 0 1 0 1 CAMTA1 chr1:7796600 5'GT 7796600 Upstream 75bp
chr16 601531 601531 1 + C T SKCM 601540 + 601520 601560 41 GGCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGC GGCTCCGAAACTCGTGGGGCCGTTTCTCCTGGAACGGCAGC < 41bp 1 0.0232414748402202 1 0.0489689707756042 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601540 chr16:601531 nonsynonymous SNV 0.986 5 12 hm5C_associated_SNPs_35496 0 0 1 0 1 CAPN15 chr16:601512 3'AG 601512 Downstream 20bp
chr16 601531 601531 1 + C T SKCM 601547 + 601527 601567 41 AAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGCTGGTCCG AAACTCGTGGGGCCGTTTCTCCTGGAACGGCAGCTGGTCCG < 41bp 1 0.46752809437638 1 0.924241185188293 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601547 chr16:601531 nonsynonymous SNV 0.986 5 5 hm5C_associated_SNPs_35497 0 0 1 0 1 CAPN15 chr16:601512 3'AG 601512 Downstream 20bp
chr17 53852169 53852169 1 + C T SKCM 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTTGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT < 41bp 1 0.304697090207229 1 0.113316476345062 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852169 synonymous SNV . 0 5 hm5C_associated_SNPs_35498 0 0 1 3 2 PCTP chr17:53852153 3'AG 53852153 Downstream 17bp
chr17 53852169 53852169 1 + C T SKCM 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTTGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT < 41bp 1 0.304697090207229 1 0.113316476345062 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852169 synonymous SNV . 0 5 hm5C_associated_SNPs_35498 0 0 1 3 2 PCTP chr17:53852220 5'GT 53852220 Upstream 52bp
chr20 60768522 60768522 1 + C T SKCM 60768502 + 60768482 60768522 41 ACCTGCAAGGTGTTTCTCAGCAAGATTGAGGACCGTGTTTC ACCTGCAAGGTGTTTCTCAGCAAGATTGAGGACCGTGTTTT < 41bp 1 0.795084094631136 1 0.41072615981102 experiment 0.409831810737727 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTG2 ENSG00000101181 CDS Human protein_coding chr20:60768502 chr20:60768522 stopgain 0.000 0 41 hm5C_associated_SNPs_35499 0 0 1 0 1 MTG2 chr20:60768472 3'AG 60768472 Downstream 51bp
chr19 3527673 3527673 1 + C T SKCM 3527693 + 3527673 3527713 41 CCAAGATCCCCTTCAAGGTGCTGGACGCGCCCGAGCTGCAG TCAAGATCCCCTTCAAGGTGCTGGACGCGCCCGAGCTGCAG < 41bp 1 0.73350023624644 1 0.255039840936661 experiment 0.53299952750712 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3527693 chr19:3527673 nonsynonymous SNV 0.999 3 1 hm5C_associated_SNPs_35500 0 0 1 0 1 FZR1 chr19:3527629 3'AG 3527629 Downstream 45bp
chr20 61450607 61450607 1 + C T SKCM 61450587 + 61450567 61450607 41 TGCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAAC TGCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAAT < 41bp 1 0.315402112550531 1 0.0916366279125214 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450587 chr20:61450607 nonsynonymous SNV 0.887 1 41 hm5C_associated_SNPs_35501 0 0 1 0 2 COL9A3 chr20:61450574 3'AG 61450574 Downstream 34bp
chr20 61450607 61450607 1 + C T SKCM 61450587 + 61450567 61450607 41 TGCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAAC TGCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAAT < 41bp 1 0.315402112550531 1 0.0916366279125214 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450587 chr20:61450607 nonsynonymous SNV 0.887 1 41 hm5C_associated_SNPs_35501 0 0 1 0 2 COL9A3 chr20:61450645 5'GT 61450645 Upstream 39bp
chr20 61450607 61450607 1 + C T SKCM 61450588 + 61450568 61450608 41 GCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAACC GCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAATC < 41bp 1 0.20142079891936 1 0.177187502384186 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450588 chr20:61450607 nonsynonymous SNV 0.887 1 40 hm5C_associated_SNPs_35502 0 0 1 0 2 COL9A3 chr20:61450574 3'AG 61450574 Downstream 34bp
chr20 61450607 61450607 1 + C T SKCM 61450588 + 61450568 61450608 41 GCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAACC GCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAATC < 41bp 1 0.20142079891936 1 0.177187502384186 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450588 chr20:61450607 nonsynonymous SNV 0.887 1 40 hm5C_associated_SNPs_35502 0 0 1 0 2 COL9A3 chr20:61450645 5'GT 61450645 Upstream 39bp
chr20 61450608 61450608 1 + C T SKCM 61450588 + 61450568 61450608 41 GCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAACC GCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAACT < 41bp 1 0.163271406067532 1 0.183100044727325 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450588 chr20:61450608 nonsynonymous SNV 0.888 2 41 hm5C_associated_SNPs_35503 0 0 1 0 2 COL9A3 chr20:61450574 3'AG 61450574 Downstream 35bp
chr20 61450608 61450608 1 + C T SKCM 61450588 + 61450568 61450608 41 GCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAACC GCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAACT < 41bp 1 0.163271406067532 1 0.183100044727325 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450588 chr20:61450608 nonsynonymous SNV 0.888 2 41 hm5C_associated_SNPs_35503 0 0 1 0 2 COL9A3 chr20:61450645 5'GT 61450645 Upstream 38bp
chr5 176519776 176519776 1 + G A SKCM 176519758 + 176519738 176519778 41 ATTCCATCGGCCTCTCCTACCAGTCTGCCTGGCTCACGGTG ATTCCATCGGCCTCTCCTACCAGTCTGCCTGGCTCACGATG < 41bp 1 0.291870793184993 1 0.186469405889511 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176519758 chr5:176519776 nonsynonymous SNV 0.994 5 39 hm5C_associated_SNPs_35504 0 0 1 0 1 FGFR4 chr5:176519785 5'GT 176519785 Upstream 10bp
chr3 66430815 66430815 1 - C A SKCM 66430812 - 66430792 66430832 41 GTCCAGAGCGCGCGGAAGCCCAGTACTTGCTTGTTTCCAAT GTCCAGAGCGCGCGGAATCCCAGTACTTGCTTGTTTCCAAT < 41bp 1 0.648765213799617 1 0.538532435894012 experiment 0.702469572400766 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430812 chr3:66430815 nonsynonymous SNV 0.001 1 18 hm5C_associated_SNPs_35508 0 0 0 0 1 LRIG1 chr3:66430913 3'AG 66430913 Downstream 99bp
chr8 22429243 22429243 1 + C T SKCM 22429234 + 22429214 22429254 41 TTCCTGTCAACTCCCAGAATCTTGGCACCCCTGGTCCAGCT TTCCTGTCAACTCCCAGAATCTTGGCACCTCTGGTCCAGCT < 41bp 1 0.243555720788438 1 0.336476445198059 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22429234 chr8:22429243 nonsynonymous SNV 0.000 0 30 hm5C_associated_SNPs_35510 0 0 1 0 2 SORBS3 chr8:22429231 3'AG 22429231 Downstream 13bp
chr8 22429243 22429243 1 + C T SKCM 22429234 + 22429214 22429254 41 TTCCTGTCAACTCCCAGAATCTTGGCACCCCTGGTCCAGCT TTCCTGTCAACTCCCAGAATCTTGGCACCTCTGGTCCAGCT < 41bp 1 0.243555720788438 1 0.336476445198059 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22429234 chr8:22429243 nonsynonymous SNV 0.000 0 30 hm5C_associated_SNPs_35510 0 0 1 0 2 SORBS3 chr8:22429334 5'GT 22429334 Upstream 92bp
chr12 69651683 69651683 1 + C T SKCM 69651667 + 69651647 69651687 41 GGCCAGCAGGACCAGGAGGGCCACCCCCACCTTTTCCAGGT GGCCAGCAGGACCAGGAGGGCCACCCCCACCTTTTCTAGGT < 41bp 1 0.142798347370311 1 0.217149317264557 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CPSF6 ENSG00000111605 CDS Human protein_coding chr12:69651667 chr12:69651683 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_35513 0 0 1 0 1 CPSF6 chr12:69651685 5'GT 69651685 Upstream 3bp
chr7 128445511 128445511 1 + C T SKCM 128445505 + 128445485 128445525 41 AGAAATGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGT AGAAATGGATTTCTTAGAGCCTGATCTTGAAATGCAGTTGT < 41bp 1 0.243829022557504 1 0.137603282928467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445505 chr7:128445511 nonsynonymous SNV 0.997 2 27 hm5C_associated_SNPs_35514 0 0 1 0 2 CCDC136 chr7:128445413 3'AG 128445413 Downstream 99bp
chr7 128445511 128445511 1 + C T SKCM 128445505 + 128445485 128445525 41 AGAAATGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGT AGAAATGGATTTCTTAGAGCCTGATCTTGAAATGCAGTTGT < 41bp 1 0.243829022557504 1 0.137603282928467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445505 chr7:128445511 nonsynonymous SNV 0.997 2 27 hm5C_associated_SNPs_35514 0 0 1 0 2 CCDC136 chr7:128445578 5'GT 128445578 Upstream 68bp
chr7 128445511 128445511 1 + C T SKCM 128445510 + 128445490 128445530 41 TGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGTTACGG TGGATTTCTTAGAGCCTGATCTTGAAATGCAGTTGTTACGG < 41bp 1 0.601443876507685 1 0.475395679473877 experiment 0.797112246984629 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445510 chr7:128445511 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_35515 0 0 1 0 2 CCDC136 chr7:128445413 3'AG 128445413 Downstream 99bp
chr7 128445511 128445511 1 + C T SKCM 128445510 + 128445490 128445530 41 TGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGTTACGG TGGATTTCTTAGAGCCTGATCTTGAAATGCAGTTGTTACGG < 41bp 1 0.601443876507685 1 0.475395679473877 experiment 0.797112246984629 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445510 chr7:128445511 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_35515 0 0 1 0 2 CCDC136 chr7:128445578 5'GT 128445578 Upstream 68bp
chr5 43173458 43173458 1 + T A SKCM 43173455 + 43173435 43173475 41 AATGTCCAAATTGTCATGAACGATTTGCTAGAAATAGCACT AATGTCCAAATTGTCATGAACGAATTGCTAGAAATAGCACT < 41bp 1 0.183071475250217 1 0.152678281068802 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZNF131 ENSG00000172262 CDS Human protein_coding chr5:43173455 chr5:43173458 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_35516 0 0 1 0 2 ZNF131 chr5:43173420 3'AG 43173420 Downstream 39bp
chr5 43173458 43173458 1 + T A SKCM 43173455 + 43173435 43173475 41 AATGTCCAAATTGTCATGAACGATTTGCTAGAAATAGCACT AATGTCCAAATTGTCATGAACGAATTGCTAGAAATAGCACT < 41bp 1 0.183071475250217 1 0.152678281068802 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZNF131 ENSG00000172262 CDS Human protein_coding chr5:43173455 chr5:43173458 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_35516 0 0 1 0 2 ZNF131 chr5:43173550 5'GT 43173550 Upstream 93bp
chr10 72289824 72289824 1 + G A SKCM 72289804 + 72289784 72289824 41 TCAGGCGGGTCCTCCAGAAACTCCAGAAGGACGGACATAGG TCAGGCGGGTCCTCCAGAAACTCCAGAAGGACGGACATAGA < 41bp 1 0.791528431912367 1 0.827481329441071 experiment 0.416943136175266 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout PALD1 ENSG00000107719 CDS Human protein_coding chr10:72289804 chr10:72289824 synonymous SNV . 0 41 hm5C_associated_SNPs_35517 0 0 0 0 1 PALD1 chr10:72289824 3'AG 72289824 Downstream 1bp
chr10 105172941 105172941 1 + C T SKCM 105172958 + 105172938 105172978 41 CTTCCTACAGCCTGGACGCCCACTCACCCGACTCTCTTGCC CTTTCTACAGCCTGGACGCCCACTCACCCGACTCTCTTGCC < 41bp 1 0.106103211493574 1 0.0480006635189056 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105172958 chr10:105172941 synonymous SNV . 0 4 hm5C_associated_SNPs_35518 0 0 1 0 1 PDCD11 chr10:105172873 3'AG 105172873 Downstream 69bp
chr7 133164807 133164807 1 + C T SKCM 133164812 + 133164792 133164832 41 GTTTCTCTGCAGGTTCGAATCGTCCTCCCATGCCATCAGTA GTTTCTCTGCAGGTTTGAATCGTCCTCCCATGCCATCAGTA < 41bp 1 0.264843972922024 1 0.256255328655243 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133164812 chr7:133164807 synonymous SNV . 0 16 hm5C_associated_SNPs_35519 0 0 1 0 2 EXOC4 chr7:133164804 3'AG 133164804 Downstream 4bp
chr7 133164807 133164807 1 + C T SKCM 133164812 + 133164792 133164832 41 GTTTCTCTGCAGGTTCGAATCGTCCTCCCATGCCATCAGTA GTTTCTCTGCAGGTTTGAATCGTCCTCCCATGCCATCAGTA < 41bp 1 0.264843972922024 1 0.256255328655243 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133164812 chr7:133164807 synonymous SNV . 0 16 hm5C_associated_SNPs_35519 0 0 1 0 2 EXOC4 chr7:133164892 5'GT 133164892 Upstream 86bp
chr19 5135385 5135385 1 + C T SKCM 5135388 + 5135368 5135408 41 GAGGCACCCATAGCCTCCCTCGGAAAGGGCTGCCCGGCCAC GAGGCACCCATAGCCTCTCTCGGAAAGGGCTGCCCGGCCAC < 41bp 1 0.761468473294788 1 0.941638231277466 experiment 0.477063053410425 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KDM4B ENSG00000127663 CDS Human protein_coding chr19:5135388 chr19:5135385 synonymous SNV . 0 18 hm5C_associated_SNPs_35520 0 0 1 0 1 KDM4B chr19:5135350 3'AG 5135350 Downstream 36bp
chr16 28994560 28994560 1 + C T SKCM 28994555 + 28994535 28994575 41 GCTCCACCGCCGAGGCCTTCCAGATCGTGCTGTCCCACCTG GCTCCACCGCCGAGGCCTTCCAGATTGTGCTGTCCCACCTG < 41bp 1 0.705729815048032 1 0.909502744674683 experiment 0.588540369903936 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28994555 chr16:28994560 synonymous SNV . 0 26 hm5C_associated_SNPs_35521 0 0 1 0 2 SPNS1 chr16:28994513 3'AG 28994513 Downstream 48bp
chr16 28994560 28994560 1 + C T SKCM 28994555 + 28994535 28994575 41 GCTCCACCGCCGAGGCCTTCCAGATCGTGCTGTCCCACCTG GCTCCACCGCCGAGGCCTTCCAGATTGTGCTGTCCCACCTG < 41bp 1 0.705729815048032 1 0.909502744674683 experiment 0.588540369903936 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28994555 chr16:28994560 synonymous SNV . 0 26 hm5C_associated_SNPs_35521 0 0 1 0 2 SPNS1 chr16:28994611 5'GT 28994611 Upstream 52bp
chr10 102824028 102824028 1 + C T SKCM 102824020 + 102824000 102824040 41 TCCCGCCTTCACCCCCAGGGCCCCAGATCGTGTCACATCCA TCCCGCCTTCACCCCCAGGGCCCCAGATTGTGTCACATCCA < 41bp 1 0.193504972158698 1 0.150785326957703 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824020 chr10:102824028 synonymous SNV . 0 29 hm5C_associated_SNPs_35522 0 0 0 0 2 KAZALD1 chr10:102823963 3'AG 102823963 Downstream 66bp
chr10 102824028 102824028 1 + C T SKCM 102824020 + 102824000 102824040 41 TCCCGCCTTCACCCCCAGGGCCCCAGATCGTGTCACATCCA TCCCGCCTTCACCCCCAGGGCCCCAGATTGTGTCACATCCA < 41bp 1 0.193504972158698 1 0.150785326957703 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824020 chr10:102824028 synonymous SNV . 0 29 hm5C_associated_SNPs_35522 0 0 0 0 2 KAZALD1 chr10:102824018 3'AG 102824018 Downstream 11bp
chr10 102824028 102824028 1 + C T SKCM 102824021 + 102824001 102824041 41 CCCGCCTTCACCCCCAGGGCCCCAGATCGTGTCACATCCAT CCCGCCTTCACCCCCAGGGCCCCAGATTGTGTCACATCCAT < 41bp 1 0.0659341923098508 1 0.0452340245246887 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824021 chr10:102824028 synonymous SNV . 0 28 hm5C_associated_SNPs_35523 0 0 0 0 2 KAZALD1 chr10:102823963 3'AG 102823963 Downstream 66bp
chr10 102824028 102824028 1 + C T SKCM 102824021 + 102824001 102824041 41 CCCGCCTTCACCCCCAGGGCCCCAGATCGTGTCACATCCAT CCCGCCTTCACCCCCAGGGCCCCAGATTGTGTCACATCCAT < 41bp 1 0.0659341923098508 1 0.0452340245246887 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824021 chr10:102824028 synonymous SNV . 0 28 hm5C_associated_SNPs_35523 0 0 0 0 2 KAZALD1 chr10:102824018 3'AG 102824018 Downstream 11bp
chr10 102824028 102824028 1 + C T SKCM 102824022 + 102824002 102824042 41 CCGCCTTCACCCCCAGGGCCCCAGATCGTGTCACATCCATA CCGCCTTCACCCCCAGGGCCCCAGATTGTGTCACATCCATA < 41bp 1 0.190227038900461 1 0.0696994960308075 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824022 chr10:102824028 synonymous SNV . 0 27 hm5C_associated_SNPs_35524 0 0 0 0 2 KAZALD1 chr10:102823963 3'AG 102823963 Downstream 66bp
chr10 102824028 102824028 1 + C T SKCM 102824022 + 102824002 102824042 41 CCGCCTTCACCCCCAGGGCCCCAGATCGTGTCACATCCATA CCGCCTTCACCCCCAGGGCCCCAGATTGTGTCACATCCATA < 41bp 1 0.190227038900461 1 0.0696994960308075 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824022 chr10:102824028 synonymous SNV . 0 27 hm5C_associated_SNPs_35524 0 0 0 0 2 KAZALD1 chr10:102824018 3'AG 102824018 Downstream 11bp
chr10 102824028 102824028 1 + C T SKCM 102824023 + 102824003 102824043 41 CGCCTTCACCCCCAGGGCCCCAGATCGTGTCACATCCATAT CGCCTTCACCCCCAGGGCCCCAGATTGTGTCACATCCATAT < 41bp 1 0.141740284704874 1 0.326568126678467 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824023 chr10:102824028 synonymous SNV . 0 26 hm5C_associated_SNPs_35525 0 0 0 0 2 KAZALD1 chr10:102823963 3'AG 102823963 Downstream 66bp
chr10 102824028 102824028 1 + C T SKCM 102824023 + 102824003 102824043 41 CGCCTTCACCCCCAGGGCCCCAGATCGTGTCACATCCATAT CGCCTTCACCCCCAGGGCCCCAGATTGTGTCACATCCATAT < 41bp 1 0.141740284704874 1 0.326568126678467 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824023 chr10:102824028 synonymous SNV . 0 26 hm5C_associated_SNPs_35525 0 0 0 0 2 KAZALD1 chr10:102824018 3'AG 102824018 Downstream 11bp
chr7 142458426 142458426 1 + G A SKCM 142458409 + 142458389 142458429 41 TCCCATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATG TCCCATCTCCACTCCAGTTGCTGCCCCCTTTGATGATAATG < 41bp 1 0.0582905277860766 1 0.0772731900215149 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458409 chr7:142458426 nonsynonymous SNV 0.714 4 38 hm5C_associated_SNPs_35526 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 21bp
chr7 142458426 142458426 1 + G A SKCM 142458412 + 142458392 142458432 41 CATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACA CATCTCCACTCCAGTTGCTGCCCCCTTTGATGATAATGACA < 41bp 1 0.0175173411142822 1 0.243454247713089 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458412 chr7:142458426 nonsynonymous SNV 0.714 4 35 hm5C_associated_SNPs_35527 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 21bp
chr7 142458426 142458426 1 + G A SKCM 142458413 + 142458393 142458433 41 ATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAA ATCTCCACTCCAGTTGCTGCCCCCTTTGATGATAATGACAA < 41bp 1 0.0515300096645422 1 0.166543573141098 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458413 chr7:142458426 nonsynonymous SNV 0.714 4 34 hm5C_associated_SNPs_35528 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 21bp
chr7 142458426 142458426 1 + G A SKCM 142458414 + 142458394 142458434 41 TCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAG TCTCCACTCCAGTTGCTGCCCCCTTTGATGATAATGACAAG < 41bp 1 0.027262624174248 1 0.179719686508179 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458414 chr7:142458426 nonsynonymous SNV 0.714 4 33 hm5C_associated_SNPs_35529 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 21bp
chr7 142458426 142458426 1 + G A SKCM 142458415 + 142458395 142458435 41 CTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGA CTCCACTCCAGTTGCTGCCCCCTTTGATGATAATGACAAGA < 41bp 1 0.00297288814754619 1 0.132223516702652 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458415 chr7:142458426 nonsynonymous SNV 0.714 4 32 hm5C_associated_SNPs_35530 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 21bp
chr7 142458426 142458426 1 + G A SKCM 142458416 + 142458396 142458436 41 TCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGAT TCCACTCCAGTTGCTGCCCCCTTTGATGATAATGACAAGAT < 41bp 1 0.0543083176031863 1 0.10258686542511 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458416 chr7:142458426 nonsynonymous SNV 0.714 4 31 hm5C_associated_SNPs_35531 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 21bp
chr7 142458426 142458426 1 + G A SKCM 142458431 + 142458411 142458451 41 GCCCCCTTTGATGATGATGACAAGATCGTTGGGGGCTACAA GCCCCCTTTGATGATAATGACAAGATCGTTGGGGGCTACAA < 41bp 1 0.690311982313198 1 0.487365663051605 experiment 0.619376035373604 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458431 chr7:142458426 nonsynonymous SNV 0.714 4 16 hm5C_associated_SNPs_35532 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 21bp
chr7 142458426 142458426 1 + G A SKCM 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATAATGACAAGATCGTTGGGGGCTACAACTGTGA < 41bp 1 0.1840905857178 1 0.136621594429016 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458426 nonsynonymous SNV 0.714 4 10 hm5C_associated_SNPs_35533 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 21bp
chr7 142458426 142458426 1 + G A SKCM 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC AATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC < 41bp 1 0.330604219981136 1 0.482866764068604 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458426 nonsynonymous SNV 0.714 4 1 hm5C_associated_SNPs_35534 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 21bp
chr6 7579510 7579510 1 + G A SKCM 7579519 + 7579499 7579539 41 ATTCCACAGCTGAAAAATACCAAGATCGAAGTTTTGGAAGA ATTCCACAGCTAAAAAATACCAAGATCGAAGTTTTGGAAGA < 41bp 1 0.639746929857134 1 0.407772094011307 experiment 0.720506140285732 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7579519 chr6:7579510 synonymous SNV . 0 12 hm5C_associated_SNPs_35535 0 0 1 0 1 DSP chr6:7579508 3'AG 7579508 Downstream 3bp
chr1 180794045 180794045 1 + C T SKCM 180794028 + 180794008 180794048 41 GCTGGAGTAAACCATGTACTCATCTTTGAACTTAATCCGAG GCTGGAGTAAACCATGTACTCATCTTTGAACTTAATCTGAG < 41bp 1 0.340997693845265 1 0.579878747463226 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control XPR1 ENSG00000143324 CDS Human protein_coding chr1:180794028 chr1:180794045 nonsynonymous SNV 0.988 4 38 hm5C_associated_SNPs_35536 0 0 1 0 1 XPR1 chr1:180794079 5'GT 180794079 Upstream 35bp
chr14 65511121 65511121 1 + G A SKCM 65511109 + 65511089 65511129 41 CTGGTGGATGGCTGCTACTCCTTCTGGCAGGCGGGGCTCCT CTGGTGGATGGCTGCTACTCCTTCTGGCAGGCAGGGCTCCT < 41bp 1 0.412032769814311 1 0.016371876001358 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65511109 chr14:65511121 synonymous SNV . 0 33 hm5C_associated_SNPs_35537 0 0 1 0 2 CHURC1-FNTB;FNTB chr14:65511029 3'AG 65511029 Downstream 93bp
chr14 65511121 65511121 1 + G A SKCM 65511109 + 65511089 65511129 41 CTGGTGGATGGCTGCTACTCCTTCTGGCAGGCGGGGCTCCT CTGGTGGATGGCTGCTACTCCTTCTGGCAGGCAGGGCTCCT < 41bp 1 0.412032769814311 1 0.016371876001358 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65511109 chr14:65511121 synonymous SNV . 0 33 hm5C_associated_SNPs_35537 0 0 1 0 2 CHURC1-FNTB;FNTB chr14:65511161 5'GT 65511161 Upstream 41bp
chr16 31235542 31235542 1 + G A SKCM 31235556 + 31235536 31235576 41 GCACCCGAGCCTGGTGGTGTCTTCCTCTGGCCGCCGCGTGG GCACCCAAGCCTGGTGGTGTCTTCCTCTGGCCGCCGCGTGG < 41bp 1 0.298312879772828 1 0.0939420461654663 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31235556 chr16:31235542 synonymous SNV . 0 7 hm5C_associated_SNPs_35539 0 0 1 0 1 TRIM72 chr16:31235502 3'AG 31235502 Downstream 41bp
chr6 31594923 31594923 1 + C T SKCM 31594939 + 31594919 31594959 41 CTACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC CTACTCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC < 41bp 1 0.301480898236747 1 0.10601395368576 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594939 chr6:31594923 nonsynonymous SNV 0.999 3 5 hm5C_associated_SNPs_35540 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 53bp
chr6 31594923 31594923 1 + C T SKCM 31594940 + 31594920 31594960 41 TACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC TACTCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC < 41bp 1 0.282761106522014 1 0.107087522745132 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594940 chr6:31594923 nonsynonymous SNV 0.999 3 4 hm5C_associated_SNPs_35541 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 53bp
chr6 31594923 31594923 1 + C T SKCM 31594941 + 31594921 31594961 41 ACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC ACTCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC < 41bp 1 0.343456864718222 1 0.259258151054382 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594941 chr6:31594923 nonsynonymous SNV 0.999 3 3 hm5C_associated_SNPs_35542 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 53bp
chr6 31594923 31594923 1 + C T SKCM 31594942 + 31594922 31594962 41 CCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCC CTCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCC < 41bp 1 0.574862050078962 1 0.434541940689087 experiment 0.850275899842076 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594942 chr6:31594923 nonsynonymous SNV 0.999 3 2 hm5C_associated_SNPs_35543 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 53bp
chr17 57738922 57738922 1 + A T SKCM 57738906 + 57738886 57738926 41 ACTTTGGTATCCTTTTGGACCAGGGACAGCTCAACAAATAC ACTTTGGTATCCTTTTGGACCAGGGACAGCTCAACATATAC < 41bp 1 0.613588861962751 1 0.546362817287445 experiment 0.772822276074498 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57738906 chr17:57738922 nonsynonymous SNV 0.999 2 37 hm5C_associated_SNPs_35544 0 0 1 0 1 CLTC chr17:57739004 5'GT 57739004 Upstream 83bp
chr12 8196335 8196335 1 + C T SKCM 8196351 + 8196331 8196371 41 TTTCCCGAAAGAGAAGACACCCTCCAGATGATGATGTAAGT TTTCTCGAAAGAGAAGACACCCTCCAGATGATGATGTAAGT < 41bp 1 0.0186036762979307 1 0.136124849319458 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXJ2 ENSG00000065970 CDS Human protein_coding chr12:8196351 chr12:8196335 synonymous SNV . 0 5 hm5C_associated_SNPs_35545 0 0 1 0 1 FOXJ2 chr12:8196365 5'GT 8196365 Upstream 31bp
chr14 75359620 75359620 1 + C T SKCM 75359614 + 75359594 75359634 41 AACCTACAGCAGCGGCAGTTCCTCCCCCTGCAGCACCCATA AACCTACAGCAGCGGCAGTTCCTCCCTCTGCAGCACCCATA < 41bp 1 0.167068683000329 1 0.110494792461395 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DLST ENSG00000119689 CDS Human protein_coding chr14:75359614 chr14:75359620 nonsynonymous SNV 0.525 1 27 hm5C_associated_SNPs_35548 0 0 1 0 2 DLST chr14:75359537 3'AG 75359537 Downstream 84bp
chr14 75359620 75359620 1 + C T SKCM 75359614 + 75359594 75359634 41 AACCTACAGCAGCGGCAGTTCCTCCCCCTGCAGCACCCATA AACCTACAGCAGCGGCAGTTCCTCCCTCTGCAGCACCCATA < 41bp 1 0.167068683000329 1 0.110494792461395 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DLST ENSG00000119689 CDS Human protein_coding chr14:75359614 chr14:75359620 nonsynonymous SNV 0.525 1 27 hm5C_associated_SNPs_35548 0 0 1 0 2 DLST chr14:75359689 5'GT 75359689 Upstream 70bp
chr3 138119420 138119420 1 + C T SKCM 138119409 + 138119389 138119429 41 AAACCAGTGCCAAGGACCCACCTCTCAATGTCGACAAAGCC AAACCAGTGCCAAGGACCCACCTCTCAATGTTGACAAAGCC < 41bp 1 0.0220267134435915 1 0.104357570409775 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRAS ENSG00000158186 CDS Human protein_coding chr3:138119409 chr3:138119420 synonymous SNV . 0 32 hm5C_associated_SNPs_35551 0 0 0 0 2 MRAS chr3:138119376 3'AG 138119376 Downstream 45bp
chr3 138119420 138119420 1 + C T SKCM 138119409 + 138119389 138119429 41 AAACCAGTGCCAAGGACCCACCTCTCAATGTCGACAAAGCC AAACCAGTGCCAAGGACCCACCTCTCAATGTTGACAAAGCC < 41bp 1 0.0220267134435915 1 0.104357570409775 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRAS ENSG00000158186 CDS Human protein_coding chr3:138119409 chr3:138119420 synonymous SNV . 0 32 hm5C_associated_SNPs_35551 0 0 0 0 2 MRAS chr3:138119455 5'GT 138119455 Upstream 36bp
chr1 22332214 22332214 1 + C T SKCM 22332194 + 22332174 22332214 41 GTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCC GTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCT < 41bp 1 0.0980161227593687 1 0.244807153940201 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332194 chr1:22332214 nonsynonymous SNV 0.944 1 41 hm5C_associated_SNPs_35552 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 60bp
chr1 22332214 22332214 1 + C T SKCM 22332194 + 22332174 22332214 41 GTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCC GTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCT < 41bp 1 0.0980161227593687 1 0.244807153940201 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332194 chr1:22332214 nonsynonymous SNV 0.944 1 41 hm5C_associated_SNPs_35552 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 76bp
chr1 22332214 22332214 1 + C T SKCM 22332195 + 22332175 22332215 41 TGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCC TGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCTC < 41bp 1 0.568488305428795 1 0.123690724372864 experiment 0.86302338914241 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332195 chr1:22332214 nonsynonymous SNV 0.944 1 40 hm5C_associated_SNPs_35553 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 60bp
chr1 22332214 22332214 1 + C T SKCM 22332195 + 22332175 22332215 41 TGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCC TGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCTC < 41bp 1 0.568488305428795 1 0.123690724372864 experiment 0.86302338914241 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332195 chr1:22332214 nonsynonymous SNV 0.944 1 40 hm5C_associated_SNPs_35553 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 76bp
chr1 22332214 22332214 1 + C T SKCM 22332199 + 22332179 22332219 41 GTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCCGAGC GTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCTCGAGC < 41bp 1 0.582508673551563 1 0.0593867599964142 experiment 0.834982652896873 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332199 chr1:22332214 nonsynonymous SNV 0.944 1 36 hm5C_associated_SNPs_35554 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 60bp
chr1 22332214 22332214 1 + C T SKCM 22332199 + 22332179 22332219 41 GTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCCGAGC GTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCTCGAGC < 41bp 1 0.582508673551563 1 0.0593867599964142 experiment 0.834982652896873 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332199 chr1:22332214 nonsynonymous SNV 0.944 1 36 hm5C_associated_SNPs_35554 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 76bp
chr1 22332214 22332214 1 + C T SKCM 22332212 + 22332192 22332232 41 AACCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT AACCTTGCTGTGAAGGAGGGCCTCGAGCAGGTGATCCCCAT < 41bp 1 0.121003000872461 1 0.111649006605148 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332212 chr1:22332214 nonsynonymous SNV 0.944 1 23 hm5C_associated_SNPs_35555 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 60bp
chr1 22332214 22332214 1 + C T SKCM 22332212 + 22332192 22332232 41 AACCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT AACCTTGCTGTGAAGGAGGGCCTCGAGCAGGTGATCCCCAT < 41bp 1 0.121003000872461 1 0.111649006605148 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332212 chr1:22332214 nonsynonymous SNV 0.944 1 23 hm5C_associated_SNPs_35555 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 76bp
chr1 22332214 22332214 1 + C T SKCM 22332215 + 22332195 22332235 41 CTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA CTTGCTGTGAAGGAGGGCCTCGAGCAGGTGATCCCCATCAA < 41bp 1 0.777952121922586 1 0.445132315158844 experiment 0.444095756154827 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332215 chr1:22332214 nonsynonymous SNV 0.944 1 20 hm5C_associated_SNPs_35556 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 60bp
chr1 22332214 22332214 1 + C T SKCM 22332215 + 22332195 22332235 41 CTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA CTTGCTGTGAAGGAGGGCCTCGAGCAGGTGATCCCCATCAA < 41bp 1 0.777952121922586 1 0.445132315158844 experiment 0.444095756154827 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332215 chr1:22332214 nonsynonymous SNV 0.944 1 20 hm5C_associated_SNPs_35556 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 76bp
chr1 22332214 22332214 1 + C T SKCM 22332227 + 22332207 22332247 41 GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCT GAGGGCCTCGAGCAGGTGATCCCCATCAACTCTGAGGAGCT < 41bp 1 0.549724387140516 1 0.130411624908447 experiment 0.900551225718969 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332227 chr1:22332214 nonsynonymous SNV 0.944 1 8 hm5C_associated_SNPs_35557 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 60bp
chr1 22332214 22332214 1 + C T SKCM 22332227 + 22332207 22332247 41 GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCT GAGGGCCTCGAGCAGGTGATCCCCATCAACTCTGAGGAGCT < 41bp 1 0.549724387140516 1 0.130411624908447 experiment 0.900551225718969 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332227 chr1:22332214 nonsynonymous SNV 0.944 1 8 hm5C_associated_SNPs_35557 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 76bp
chr1 22332214 22332214 1 + C T SKCM 22332228 + 22332208 22332248 41 AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTG AGGGCCTCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTG < 41bp 1 0.136557948864753 1 0.0350779294967651 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332228 chr1:22332214 nonsynonymous SNV 0.944 1 7 hm5C_associated_SNPs_35558 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 60bp
chr1 22332214 22332214 1 + C T SKCM 22332228 + 22332208 22332248 41 AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTG AGGGCCTCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTG < 41bp 1 0.136557948864753 1 0.0350779294967651 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332228 chr1:22332214 nonsynonymous SNV 0.944 1 7 hm5C_associated_SNPs_35558 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 76bp
chr1 22332214 22332214 1 + C T SKCM 22332229 + 22332209 22332249 41 GGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGT GGGCCTCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGT < 41bp 1 0.0803453316137861 1 0.179816335439682 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332229 chr1:22332214 nonsynonymous SNV 0.944 1 6 hm5C_associated_SNPs_35559 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 60bp
chr1 22332214 22332214 1 + C T SKCM 22332229 + 22332209 22332249 41 GGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGT GGGCCTCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGT < 41bp 1 0.0803453316137861 1 0.179816335439682 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332229 chr1:22332214 nonsynonymous SNV 0.944 1 6 hm5C_associated_SNPs_35559 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 76bp
chr1 22332214 22332214 1 + C T SKCM 22332230 + 22332210 22332250 41 GGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTT GGCCTCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTT < 41bp 1 0.420446396745736 1 0.317745983600616 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332230 chr1:22332214 nonsynonymous SNV 0.944 1 5 hm5C_associated_SNPs_35560 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 60bp
chr1 22332214 22332214 1 + C T SKCM 22332230 + 22332210 22332250 41 GGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTT GGCCTCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTT < 41bp 1 0.420446396745736 1 0.317745983600616 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332230 chr1:22332214 nonsynonymous SNV 0.944 1 5 hm5C_associated_SNPs_35560 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 76bp
chr1 22332214 22332214 1 + C T SKCM 22332233 + 22332213 22332253 41 CCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGT CTCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGT < 41bp 1 0.44301032004779 1 0.513051271438599 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332233 chr1:22332214 nonsynonymous SNV 0.944 1 2 hm5C_associated_SNPs_35561 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 60bp
chr1 22332214 22332214 1 + C T SKCM 22332233 + 22332213 22332253 41 CCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGT CTCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGT < 41bp 1 0.44301032004779 1 0.513051271438599 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332233 chr1:22332214 nonsynonymous SNV 0.944 1 2 hm5C_associated_SNPs_35561 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 76bp
chr19 50285900 50285900 1 + C T SKCM 50285882 + 50285862 50285902 41 TGACCTGGCCAGCCGCAACCCCACCTTCATGTGCCTGGCCC TGACCTGGCCAGCCGCAACCCCACCTTCATGTGCCTGGTCC < 41bp 1 0.213908992398128 1 0.207119941711426 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50285882 chr19:50285900 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_35562 0 0 1 0 1 AP2A1 chr19:50285981 5'GT 50285981 Upstream 82bp
chr10 114918442 114918442 1 + C T SKCM 114918428 + 114918408 114918448 41 TTTGTTCTTTTTTTTCAGAACACAGCGAATGTTTCCTAAAT TTTGTTCTTTTTTTTCAGAACACAGCGAATGTTTTCTAAAT < 41bp 1 0.272355281389591 1 0.274420320987701 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114918428 chr10:114918442 synonymous SNV . 0 35 hm5C_associated_SNPs_35563 0 0 1 0 2 TCF7L2 chr10:114918426 3'AG 114918426 Downstream 17bp
chr10 114918442 114918442 1 + C T SKCM 114918428 + 114918408 114918448 41 TTTGTTCTTTTTTTTCAGAACACAGCGAATGTTTCCTAAAT TTTGTTCTTTTTTTTCAGAACACAGCGAATGTTTTCTAAAT < 41bp 1 0.272355281389591 1 0.274420320987701 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114918428 chr10:114918442 synonymous SNV . 0 35 hm5C_associated_SNPs_35563 0 0 1 0 2 TCF7L2 chr10:114918476 5'GT 114918476 Upstream 35bp
chr4 126398345 126398345 1 + G A SKCM 126398352 + 126398332 126398372 41 AGAGTTACAGTTGGAGGTATCAGATCTCTAGAACCAATCCT AGAGTTACAGTTGAAGGTATCAGATCTCTAGAACCAATCCT < 41bp 1 0.118054144469681 1 0.783479809761047 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126398352 chr4:126398345 nonsynonymous SNV 0.992 4 14 hm5C_associated_SNPs_35564 0 0 1 0 1 FAT4 chr4:126398310 3'AG 126398310 Downstream 36bp
chr5 173378909 173378909 1 + T G SKCM 173378893 + 173378873 173378913 41 ATGGTTCACAGCCACTTGACCCACGAAAAACTATATTTGTT ATGGTTCACAGCCACTTGACCCACGAAAAACTATATGTGTT < 41bp 1 0.178858351604315 1 0.350405037403107 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173378893 chr5:173378909 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_35565 0 0 1 0 2 CPEB4 chr5:173378827 3'AG 173378827 Downstream 83bp
chr5 173378909 173378909 1 + T G SKCM 173378893 + 173378873 173378913 41 ATGGTTCACAGCCACTTGACCCACGAAAAACTATATTTGTT ATGGTTCACAGCCACTTGACCCACGAAAAACTATATGTGTT < 41bp 1 0.178858351604315 1 0.350405037403107 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173378893 chr5:173378909 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_35565 0 0 1 0 2 CPEB4 chr5:173378941 5'GT 173378941 Upstream 33bp
chr19 806455 806455 1 + C T SKCM 806441 + 806421 806461 41 GAACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGG GAACGTCCACGGCGCCCTGGCCCCCCTGGCCATCTCCTCGG < 41bp 1 0.287091764674781 1 0.0276341140270233 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806441 chr19:806455 nonsynonymous SNV 0.006 0 35 hm5C_associated_SNPs_35566 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 48bp
chr19 806455 806455 1 + C T SKCM 806442 + 806422 806462 41 AACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGC AACGTCCACGGCGCCCTGGCCCCCCTGGCCATCTCCTCGGC < 41bp 1 0.340961109640954 1 0.044533908367157 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806442 chr19:806455 nonsynonymous SNV 0.006 0 34 hm5C_associated_SNPs_35567 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 48bp
chr19 806455 806455 1 + C T SKCM 806443 + 806423 806463 41 ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCG ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCTCCTCGGCG < 41bp 1 0.43207665864714 1 0.0123945474624634 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806443 chr19:806455 nonsynonymous SNV 0.006 0 33 hm5C_associated_SNPs_35568 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 48bp
chr19 806455 806455 1 + C T SKCM 806444 + 806424 806464 41 CGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG CGTCCACGGCGCCCTGGCCCCCCTGGCCATCTCCTCGGCGG < 41bp 1 0.554067004766479 1 0.135678470134735 experiment 0.891865990467042 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806444 chr19:806455 nonsynonymous SNV 0.006 0 32 hm5C_associated_SNPs_35569 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 48bp
chr19 806455 806455 1 + C T SKCM 806445 + 806425 806465 41 GTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGC GTCCACGGCGCCCTGGCCCCCCTGGCCATCTCCTCGGCGGC < 41bp 1 0.454110125931675 1 0.364748150110245 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806445 chr19:806455 nonsynonymous SNV 0.006 0 31 hm5C_associated_SNPs_35570 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 48bp
chr19 806455 806455 1 + C T SKCM 806446 + 806426 806466 41 TCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCG TCCACGGCGCCCTGGCCCCCCTGGCCATCTCCTCGGCGGCG < 41bp 1 0.715654954870738 1 0.430299580097198 experiment 0.568690090258524 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806446 chr19:806455 nonsynonymous SNV 0.006 0 30 hm5C_associated_SNPs_35571 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 48bp
chr19 806455 806455 1 + C T SKCM 806450 + 806430 806470 41 CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGG CGGCGCCCTGGCCCCCCTGGCCATCTCCTCGGCGGCGGCGG < 41bp 1 0.0869612546371572 1 0.079433798789978 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806450 chr19:806455 nonsynonymous SNV 0.006 0 26 hm5C_associated_SNPs_35572 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 48bp
chr19 806455 806455 1 + C T SKCM 806451 + 806431 806471 41 GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGGC GGCGCCCTGGCCCCCCTGGCCATCTCCTCGGCGGCGGCGGC < 41bp 1 0.247462881915688 1 0.158103823661804 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806451 chr19:806455 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_35573 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 48bp
chr22 40802634 40802634 1 + C T SKCM 40802642 + 40802622 40802662 41 CAGGGCCAGCTCCTGGGGGCCGGCACCCTCACCAACCTCTC CAGGGCCAGCTCTTGGGGGCCGGCACCCTCACCAACCTCTC < 41bp 1 0.644376611830684 1 0.710940778255463 experiment 0.711246776338633 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40802642 chr22:40802634 synonymous SNV . 0 13 hm5C_associated_SNPs_35576 0 0 1 0 1 SGSM3 chr22:40802666 5'GT 40802666 Upstream 33bp
chr10 118314743 118314743 1 + G A SKCM 118314723 + 118314703 118314743 41 AGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGG AGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGA < 41bp 1 0.451490201666903 1 0.0457857847213745 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314723 chr10:118314743 nonsynonymous SNV 0.998 5 41 hm5C_associated_SNPs_35577 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 67bp
chr10 118314743 118314743 1 + G A SKCM 118314725 + 118314705 118314745 41 AACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGAC AACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGAAC < 41bp 1 0.227775581199231 1 0.290993213653564 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314725 chr10:118314743 nonsynonymous SNV 0.998 5 39 hm5C_associated_SNPs_35578 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 67bp
chr10 118314743 118314743 1 + G A SKCM 118314726 + 118314706 118314746 41 ACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGACC ACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGAACC < 41bp 1 0.701837648868481 1 0.588579654693604 experiment 0.596324702263038 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314726 chr10:118314743 nonsynonymous SNV 0.998 5 38 hm5C_associated_SNPs_35579 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 67bp
chr10 118314743 118314743 1 + G A SKCM 118314736 + 118314716 118314756 41 CAGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGC CAGGGCACACCTGAATTAGTCCGATTGAACCCCAGCGATGC < 41bp 1 0.350688940700664 1 0.261632859706879 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314736 chr10:118314743 nonsynonymous SNV 0.998 5 28 hm5C_associated_SNPs_35580 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 67bp
chr10 118314743 118314743 1 + G A SKCM 118314737 + 118314717 118314757 41 AGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGCC AGGGCACACCTGAATTAGTCCGATTGAACCCCAGCGATGCC < 41bp 1 0.23896171581895 1 0.0804831087589264 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314737 chr10:118314743 nonsynonymous SNV 0.998 5 27 hm5C_associated_SNPs_35581 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 67bp
chr10 118314743 118314743 1 + G A SKCM 118314745 + 118314725 118314765 41 CCTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGT CCTGAATTAGTCCGATTGAACCCCAGCGATGCCAAATTTGT < 41bp 1 0.594806096205609 1 0.0885636806488037 experiment 0.810387807588782 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314745 chr10:118314743 nonsynonymous SNV 0.998 5 19 hm5C_associated_SNPs_35582 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 67bp
chr10 118314743 118314743 1 + G A SKCM 118314746 + 118314726 118314766 41 CTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTG CTGAATTAGTCCGATTGAACCCCAGCGATGCCAAATTTGTG < 41bp 1 0.220053291575936 1 0.186921983957291 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314746 chr10:118314743 nonsynonymous SNV 0.998 5 18 hm5C_associated_SNPs_35583 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 67bp
chr10 118314743 118314743 1 + G A SKCM 118314747 + 118314727 118314767 41 TGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGG TGAATTAGTCCGATTGAACCCCAGCGATGCCAAATTTGTGG < 41bp 1 0.333246397200552 1 0.268136888742447 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314747 chr10:118314743 nonsynonymous SNV 0.998 5 17 hm5C_associated_SNPs_35584 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 67bp
chr10 118314743 118314743 1 + G A SKCM 118314748 + 118314728 118314768 41 GAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGA GAATTAGTCCGATTGAACCCCAGCGATGCCAAATTTGTGGA < 41bp 1 0.698355612295192 1 0.366041153669357 experiment 0.603288775409616 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314748 chr10:118314743 nonsynonymous SNV 0.998 5 16 hm5C_associated_SNPs_35585 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 67bp
chr10 118314743 118314743 1 + G A SKCM 118314751 + 118314731 118314771 41 TTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGATGT TTAGTCCGATTGAACCCCAGCGATGCCAAATTTGTGGATGT < 41bp 1 0.246945333015952 1 0.172598391771317 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314751 chr10:118314743 nonsynonymous SNV 0.998 5 13 hm5C_associated_SNPs_35586 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 67bp
chr10 118314743 118314743 1 + G A SKCM 118314756 + 118314736 118314776 41 CCGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTC CCGATTGAACCCCAGCGATGCCAAATTTGTGGATGTAATTC < 41bp 1 0.307437962226211 1 0.050683468580246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314756 chr10:118314743 nonsynonymous SNV 0.998 5 8 hm5C_associated_SNPs_35587 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 67bp
chr10 118314743 118314743 1 + G A SKCM 118314757 + 118314737 118314777 41 CGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTCA CGATTGAACCCCAGCGATGCCAAATTTGTGGATGTAATTCA < 41bp 1 0.425802544001562 1 0.248462021350861 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314757 chr10:118314743 nonsynonymous SNV 0.998 5 7 hm5C_associated_SNPs_35588 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 67bp
chr15 72057460 72057460 1 + C T SKCM 72057443 + 72057423 72057463 41 ACACCTTTGAAGTGTTGGACCCCTCTGAATGTTCTTTCCTG ACACCTTTGAAGTGTTGGACCCCTCTGAATGTTCTTTTCTG < 41bp 1 0.0243598230036006 1 0.018947958946228 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control THSD4 ENSG00000187720 CDS Human protein_coding chr15:72057443 chr15:72057460 synonymous SNV . 0 38 hm5C_associated_SNPs_35590 0 0 0 0 1 THSD4 chr15:72057538 5'GT 72057538 Upstream 79bp
chr16 88098895 88098895 1 + C T SKCM 88098888 + 88098868 88098908 41 TCCAGCTTCTAGAGGCCACCCGCATCCCCTGCCTCCTGGCC TCCAGCTTCTAGAGGCCACCCGCATCCTCTGCCTCCTGGCC < 41bp 1 0.222886932935174 1 0.125846296548843 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BANP ENSG00000172530 CDS Human protein_coding chr16:88098888 chr16:88098895 nonsynonymous SNV 0.960 1 28 hm5C_associated_SNPs_35591 0 0 0 0 2 BANP chr16:88098873 3'AG 88098873 Downstream 23bp
chr16 88098895 88098895 1 + C T SKCM 88098888 + 88098868 88098908 41 TCCAGCTTCTAGAGGCCACCCGCATCCCCTGCCTCCTGGCC TCCAGCTTCTAGAGGCCACCCGCATCCTCTGCCTCCTGGCC < 41bp 1 0.222886932935174 1 0.125846296548843 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BANP ENSG00000172530 CDS Human protein_coding chr16:88098888 chr16:88098895 nonsynonymous SNV 0.960 1 28 hm5C_associated_SNPs_35591 0 0 0 0 2 BANP chr16:88098938 5'GT 88098938 Upstream 44bp
chr19 5133912 5133912 1 + G A SKCM 5133900 + 5133880 5133920 41 CTCTGTTCTTCTAGAGGCATCCCCTTTCTCCGGGGAGGAAG CTCTGTTCTTCTAGAGGCATCCCCTTTCTCCGAGGAGGAAG < 41bp 1 0.0817401363631189 1 0.0315897464752197 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KDM4B ENSG00000127663 CDS Human protein_coding chr19:5133900 chr19:5133912 nonsynonymous SNV 0.358 2 33 hm5C_associated_SNPs_35592 0 0 1 0 1 KDM4B chr19:5133894 3'AG 5133894 Downstream 19bp
chr17 30694883 30694883 1 + C T SKCM 30694868 + 30694848 30694888 41 CCTGCAACAACTACAGAACCCCCAAAGCCTACATTCCCTGC CCTGCAACAACTACAGAACCCCCAAAGCCTACATTTCCTGC < 41bp 1 0.448853870093164 1 0.128404408693314 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30694868 chr17:30694883 synonymous SNV . 0 36 hm5C_associated_SNPs_35598 0 0 1 4 1 ZNF207 chr17:30694791 3'AG 30694791 Downstream 93bp
chr17 18143908 18143908 1 + C T SKCM 18143895 + 18143875 18143915 41 GCGCTTGTTTTCTGCAGGGGCCCACCACGGGCCCACCATGT GCGCTTGTTTTCTGCAGGGGCCCACCACGGGCCTACCATGT < 41bp 1 0.0359524526643307 1 0.125289499759674 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18143895 chr17:18143908 synonymous SNV . 0 34 hm5C_associated_SNPs_35599 0 0 1 0 1 LLGL1 chr17:18143892 3'AG 18143892 Downstream 17bp
chr17 18143908 18143908 1 + C T SKCM 18143896 + 18143876 18143916 41 CGCTTGTTTTCTGCAGGGGCCCACCACGGGCCCACCATGTG CGCTTGTTTTCTGCAGGGGCCCACCACGGGCCTACCATGTG < 41bp 1 0.046981228659509 1 0.0382841825485229 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18143896 chr17:18143908 synonymous SNV . 0 33 hm5C_associated_SNPs_35600 0 0 1 0 1 LLGL1 chr17:18143892 3'AG 18143892 Downstream 17bp
chr17 18143908 18143908 1 + C T SKCM 18143897 + 18143877 18143917 41 GCTTGTTTTCTGCAGGGGCCCACCACGGGCCCACCATGTGG GCTTGTTTTCTGCAGGGGCCCACCACGGGCCTACCATGTGG < 41bp 1 0.76725979062985 1 0.339068353176117 experiment 0.465480418740301 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18143897 chr17:18143908 synonymous SNV . 0 32 hm5C_associated_SNPs_35601 0 0 1 0 1 LLGL1 chr17:18143892 3'AG 18143892 Downstream 17bp
chr17 18143908 18143908 1 + C T SKCM 18143906 + 18143886 18143926 41 CTGCAGGGGCCCACCACGGGCCCACCATGTGGGCTGGCACC CTGCAGGGGCCCACCACGGGCCTACCATGTGGGCTGGCACC < 41bp 1 0.0128263388478446 1 0.0305661261081696 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18143906 chr17:18143908 synonymous SNV . 0 23 hm5C_associated_SNPs_35602 0 0 1 0 1 LLGL1 chr17:18143892 3'AG 18143892 Downstream 17bp
chr17 18143908 18143908 1 + C T SKCM 18143907 + 18143887 18143927 41 TGCAGGGGCCCACCACGGGCCCACCATGTGGGCTGGCACCA TGCAGGGGCCCACCACGGGCCTACCATGTGGGCTGGCACCA < 41bp 1 0.181073517640898 1 0.0776053071022034 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18143907 chr17:18143908 synonymous SNV . 0 22 hm5C_associated_SNPs_35603 0 0 1 0 1 LLGL1 chr17:18143892 3'AG 18143892 Downstream 17bp
chr6 26091188 26091188 1 + C T SKCM 26091207 + 26091187 26091227 41 TCGCCGTGTGGAGCCCCGAACTCCATGGGTTTCCAGTAGAA TTGCCGTGTGGAGCCCCGAACTCCATGGGTTTCCAGTAGAA < 41bp 1 0.784734876097866 1 0.918492674827576 experiment 0.430530247804268 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26091207 chr6:26091188 nonsynonymous SNV 0.981 3 2 hm5C_associated_SNPs_35604 0 0 0 0 1 HFE chr6:26091138 3'AG 26091138 Downstream 51bp
chr15 41854896 41854896 1 + C T SKCM 41854884 + 41854864 41854904 41 AACTACGAAGATCGGGGGACCCGCTCCCTCTCCATCTGTTT AACTACGAAGATCGGGGGACCCGCTCCCTCTCTATCTGTTT < 41bp 1 0.0590978213828858 1 0.101542919874191 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41854884 chr15:41854896 nonsynonymous SNV 0.993 3 33 hm5C_associated_SNPs_35606 0 0 0 0 1 TYRO3 chr15:41854916 5'GT 41854916 Upstream 21bp
chr15 41854896 41854896 1 + C T SKCM 41854885 + 41854865 41854905 41 ACTACGAAGATCGGGGGACCCGCTCCCTCTCCATCTGTTTT ACTACGAAGATCGGGGGACCCGCTCCCTCTCTATCTGTTTT < 41bp 1 0.170755087028648 1 0.0618149638175964 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41854885 chr15:41854896 nonsynonymous SNV 0.993 3 32 hm5C_associated_SNPs_35607 0 0 0 0 1 TYRO3 chr15:41854916 5'GT 41854916 Upstream 21bp
chr7 142460361 142460361 1 + G A SKCM 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAAATTA < 41bp 1 0.0362383936521942 1 0.123823225498199 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460361 synonymous SNV . 0 37 hm5C_associated_SNPs_35608 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 80bp
chr7 142460361 142460361 1 + G A SKCM 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAAATTA < 41bp 1 0.0362383936521942 1 0.123823225498199 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460361 synonymous SNV . 0 37 hm5C_associated_SNPs_35608 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 58bp
chr7 142460361 142460361 1 + G A SKCM 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAAATTAC < 41bp 1 0.236658583912164 1 0.699200332164764 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460361 synonymous SNV . 0 36 hm5C_associated_SNPs_35609 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 80bp
chr7 142460361 142460361 1 + G A SKCM 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAAATTAC < 41bp 1 0.236658583912164 1 0.699200332164764 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460361 synonymous SNV . 0 36 hm5C_associated_SNPs_35609 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 58bp
chr7 142460361 142460361 1 + G A SKCM 142460348 + 142460328 142460368 41 CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAAATTACCA < 41bp 1 0.018278075752369 1 0.183378845453262 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460348 chr7:142460361 synonymous SNV . 0 34 hm5C_associated_SNPs_35610 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 80bp
chr7 142460361 142460361 1 + G A SKCM 142460348 + 142460328 142460368 41 CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAAATTACCA < 41bp 1 0.018278075752369 1 0.183378845453262 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460348 chr7:142460361 synonymous SNV . 0 34 hm5C_associated_SNPs_35610 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 58bp
chr7 142460361 142460361 1 + G A SKCM 142460349 + 142460329 142460369 41 CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAAATTACCAG < 41bp 1 0.221095151307814 1 0.248469442129135 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460349 chr7:142460361 synonymous SNV . 0 33 hm5C_associated_SNPs_35611 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 80bp
chr7 142460361 142460361 1 + G A SKCM 142460349 + 142460329 142460369 41 CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAAATTACCAG < 41bp 1 0.221095151307814 1 0.248469442129135 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460349 chr7:142460361 synonymous SNV . 0 33 hm5C_associated_SNPs_35611 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 58bp
chr7 142460361 142460361 1 + G A SKCM 142460352 + 142460332 142460372 41 GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA GCTAAGTGTGAAGCCTCCTACCCTGGAAAAATTACCAGCAA < 41bp 1 0.354150985383723 1 0.51630175113678 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460352 chr7:142460361 synonymous SNV . 0 30 hm5C_associated_SNPs_35612 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 80bp
chr7 142460361 142460361 1 + G A SKCM 142460352 + 142460332 142460372 41 GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA GCTAAGTGTGAAGCCTCCTACCCTGGAAAAATTACCAGCAA < 41bp 1 0.354150985383723 1 0.51630175113678 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460352 chr7:142460361 synonymous SNV . 0 30 hm5C_associated_SNPs_35612 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 58bp
chr7 142460361 142460361 1 + G A SKCM 142460353 + 142460333 142460373 41 CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC CTAAGTGTGAAGCCTCCTACCCTGGAAAAATTACCAGCAAC < 41bp 1 0.2979375008432 1 0.564144790172577 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460353 chr7:142460361 synonymous SNV . 0 29 hm5C_associated_SNPs_35613 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 80bp
chr7 142460361 142460361 1 + G A SKCM 142460353 + 142460333 142460373 41 CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC CTAAGTGTGAAGCCTCCTACCCTGGAAAAATTACCAGCAAC < 41bp 1 0.2979375008432 1 0.564144790172577 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460353 chr7:142460361 synonymous SNV . 0 29 hm5C_associated_SNPs_35613 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 58bp
chr7 142460361 142460361 1 + G A SKCM 142460354 + 142460334 142460374 41 TAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAACA TAAGTGTGAAGCCTCCTACCCTGGAAAAATTACCAGCAACA < 41bp 1 0.760678012256561 1 0.539745628833771 experiment 0.478643975486879 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460354 chr7:142460361 synonymous SNV . 0 28 hm5C_associated_SNPs_35614 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 80bp
chr7 142460361 142460361 1 + G A SKCM 142460354 + 142460334 142460374 41 TAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAACA TAAGTGTGAAGCCTCCTACCCTGGAAAAATTACCAGCAACA < 41bp 1 0.760678012256561 1 0.539745628833771 experiment 0.478643975486879 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460354 chr7:142460361 synonymous SNV . 0 28 hm5C_associated_SNPs_35614 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 58bp
chr7 142460361 142460361 1 + G A SKCM 142460366 + 142460346 142460386 41 CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG CTCCTACCCTGGAAAAATTACCAGCAACATGTTCTGTGTGG < 41bp 1 0.153825271258631 1 0.10925766825676 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460366 chr7:142460361 synonymous SNV . 0 16 hm5C_associated_SNPs_35615 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 80bp
chr7 142460361 142460361 1 + G A SKCM 142460366 + 142460346 142460386 41 CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG CTCCTACCCTGGAAAAATTACCAGCAACATGTTCTGTGTGG < 41bp 1 0.153825271258631 1 0.10925766825676 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460366 chr7:142460361 synonymous SNV . 0 16 hm5C_associated_SNPs_35615 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 58bp
chr7 142460361 142460361 1 + G A SKCM 142460367 + 142460347 142460387 41 TCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG TCCTACCCTGGAAAAATTACCAGCAACATGTTCTGTGTGGG < 41bp 1 0.650052318708825 1 0.748933672904968 experiment 0.699895362582351 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460367 chr7:142460361 synonymous SNV . 0 15 hm5C_associated_SNPs_35616 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 80bp
chr7 142460361 142460361 1 + G A SKCM 142460367 + 142460347 142460387 41 TCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG TCCTACCCTGGAAAAATTACCAGCAACATGTTCTGTGTGGG < 41bp 1 0.650052318708825 1 0.748933672904968 experiment 0.699895362582351 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460367 chr7:142460361 synonymous SNV . 0 15 hm5C_associated_SNPs_35616 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 58bp
chr7 142460361 142460361 1 + G A SKCM 142460370 + 142460350 142460390 41 TACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT TACCCTGGAAAAATTACCAGCAACATGTTCTGTGTGGGCTT < 41bp 1 0.3994323876648 1 0.56414133310318 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460370 chr7:142460361 synonymous SNV . 0 12 hm5C_associated_SNPs_35617 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 80bp
chr7 142460361 142460361 1 + G A SKCM 142460370 + 142460350 142460390 41 TACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT TACCCTGGAAAAATTACCAGCAACATGTTCTGTGTGGGCTT < 41bp 1 0.3994323876648 1 0.56414133310318 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460370 chr7:142460361 synonymous SNV . 0 12 hm5C_associated_SNPs_35617 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 58bp
chr7 142460361 142460361 1 + G A SKCM 142460373 + 142460353 142460393 41 CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT CCTGGAAAAATTACCAGCAACATGTTCTGTGTGGGCTTCCT < 41bp 1 0.185597818056934 1 0.109185755252838 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460373 chr7:142460361 synonymous SNV . 0 9 hm5C_associated_SNPs_35618 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 80bp
chr7 142460361 142460361 1 + G A SKCM 142460373 + 142460353 142460393 41 CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT CCTGGAAAAATTACCAGCAACATGTTCTGTGTGGGCTTCCT < 41bp 1 0.185597818056934 1 0.109185755252838 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460373 chr7:142460361 synonymous SNV . 0 9 hm5C_associated_SNPs_35618 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 58bp
chr7 142460361 142460361 1 + G A SKCM 142460379 + 142460359 142460399 41 AAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG AAAATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG < 41bp 1 0.319793283766641 1 0.395361840724945 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460379 chr7:142460361 synonymous SNV . 0 3 hm5C_associated_SNPs_35619 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 80bp
chr7 142460361 142460361 1 + G A SKCM 142460379 + 142460359 142460399 41 AAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG AAAATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG < 41bp 1 0.319793283766641 1 0.395361840724945 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460379 chr7:142460361 synonymous SNV . 0 3 hm5C_associated_SNPs_35619 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 58bp
chr1 183083788 183083788 1 + T G SKCM 183083799 + 183083779 183083819 41 TGTGAGAGGTGCCGAGAGAACTTCTTCCGCCTTGGCAACAA TGTGAGAGGGGCCGAGAGAACTTCTTCCGCCTTGGCAACAA < 41bp 1 0.458342430947202 1 0.33073216676712 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183083799 chr1:183083788 nonsynonymous SNV 0.994 5 10 hm5C_associated_SNPs_35620 0 0 1 0 1 LAMC1 chr1:183083854 5'GT 183083854 Upstream 67bp
chr8 48962468 48962468 1 + C T SKCM 48962459 + 48962439 48962479 41 CCTGAAAGTAGAATGTGGACCTAAATACCCAGAAGCTCCTC CCTGAAAGTAGAATGTGGACCTAAATACCTAGAAGCTCCTC < 41bp 1 0.784348111627596 1 0.357779800891876 experiment 0.431303776744808 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBE2V2 ENSG00000169139 CDS Human protein_coding chr8:48962459 chr8:48962468 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_35621 0 0 1 0 2 UBE2V2 chr8:48962413 3'AG 48962413 Downstream 56bp
chr8 48962468 48962468 1 + C T SKCM 48962459 + 48962439 48962479 41 CCTGAAAGTAGAATGTGGACCTAAATACCCAGAAGCTCCTC CCTGAAAGTAGAATGTGGACCTAAATACCTAGAAGCTCCTC < 41bp 1 0.784348111627596 1 0.357779800891876 experiment 0.431303776744808 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBE2V2 ENSG00000169139 CDS Human protein_coding chr8:48962459 chr8:48962468 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_35621 0 0 1 0 2 UBE2V2 chr8:48962538 5'GT 48962538 Upstream 71bp
chr13 111147731 111147731 1 + G A SKCM 111147745 + 111147725 111147765 41 CTCCTGGGGAAAGAGGTGACCCAGGAGAGGCCAACACCCTT CTCCTGAGGAAAGAGGTGACCCAGGAGAGGCCAACACCCTT < 41bp 1 0.225004114323129 1 0.457956075668335 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111147745 chr13:111147731 nonsynonymous SNV 0.037 5 7 hm5C_associated_SNPs_35622 0 0 0 0 2 COL4A2 chr13:111147689 3'AG 111147689 Downstream 43bp
chr13 111147731 111147731 1 + G A SKCM 111147745 + 111147725 111147765 41 CTCCTGGGGAAAGAGGTGACCCAGGAGAGGCCAACACCCTT CTCCTGAGGAAAGAGGTGACCCAGGAGAGGCCAACACCCTT < 41bp 1 0.225004114323129 1 0.457956075668335 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111147745 chr13:111147731 nonsynonymous SNV 0.037 5 7 hm5C_associated_SNPs_35622 0 0 0 0 2 COL4A2 chr13:111147814 5'GT 111147814 Upstream 84bp
chr9 140110212 140110212 1 + C T SKCM 140110226 + 140110206 140110246 41 GTAGCCCCCTTCCGAGCAGCCATCCAGGAGCGTGTGGCCCA GTAGCCTCCTTCCGAGCAGCCATCCAGGAGCGTGTGGCCCA < 41bp 1 0.125315041731376 1 0.0623038709163666 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110226 chr9:140110212 nonsynonymous SNV 0.967 5 7 hm5C_associated_SNPs_35623 0 0 1 0 1 NDOR1 chr9:140110257 5'GT 140110257 Upstream 46bp
chr9 140110213 140110213 1 + C T SKCM 140110226 + 140110206 140110246 41 GTAGCCCCCTTCCGAGCAGCCATCCAGGAGCGTGTGGCCCA GTAGCCCTCTTCCGAGCAGCCATCCAGGAGCGTGTGGCCCA < 41bp 1 0.156122663390539 1 0.0685960054397583 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110226 chr9:140110213 nonsynonymous SNV 0.978 5 8 hm5C_associated_SNPs_35624 0 0 1 0 1 NDOR1 chr9:140110257 5'GT 140110257 Upstream 45bp
chr1 36315797 36315797 1 + G A SKCM 36315787 + 36315767 36315807 41 AGTGGCAATGTACCAGCAGGCACTACAGTGGATAGTACCAT AGTGGCAATGTACCAGCAGGCACTACAGTGAATAGTACCAT < 41bp 1 0.391745543786433 1 0.218070089817047 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AGO4 ENSG00000134698 CDS Human protein_coding chr1:36315787 chr1:36315797 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_35625 0 0 1 0 2 AGO4 chr1:36315758 3'AG 36315758 Downstream 40bp
chr1 36315797 36315797 1 + G A SKCM 36315787 + 36315767 36315807 41 AGTGGCAATGTACCAGCAGGCACTACAGTGGATAGTACCAT AGTGGCAATGTACCAGCAGGCACTACAGTGAATAGTACCAT < 41bp 1 0.391745543786433 1 0.218070089817047 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AGO4 ENSG00000134698 CDS Human protein_coding chr1:36315787 chr1:36315797 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_35625 0 0 1 0 2 AGO4 chr1:36315859 5'GT 36315859 Upstream 63bp
chr19 36593925 36593925 1 + C T SKCM 36593911 + 36593891 36593931 41 TGAAGTCTCCAGAGGTCAAGCTCATGGACCGAGGCGGAAGC TGAAGTCTCCAGAGGTCAAGCTCATGGACCGAGGTGGAAGC < 41bp 1 0.298493425686273 1 0.148112028837204 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36593911 chr19:36593925 synonymous SNV . 0 35 hm5C_associated_SNPs_35626 0 0 1 0 2 WDR62 chr19:36593850 3'AG 36593850 Downstream 76bp
chr19 36593925 36593925 1 + C T SKCM 36593911 + 36593891 36593931 41 TGAAGTCTCCAGAGGTCAAGCTCATGGACCGAGGCGGAAGC TGAAGTCTCCAGAGGTCAAGCTCATGGACCGAGGTGGAAGC < 41bp 1 0.298493425686273 1 0.148112028837204 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36593911 chr19:36593925 synonymous SNV . 0 35 hm5C_associated_SNPs_35626 0 0 1 0 2 WDR62 chr19:36593976 5'GT 36593976 Upstream 52bp
chr19 36593925 36593925 1 + C T SKCM 36593920 + 36593900 36593940 41 CAGAGGTCAAGCTCATGGACCGAGGCGGAAGCCAGCCCAGA CAGAGGTCAAGCTCATGGACCGAGGTGGAAGCCAGCCCAGA < 41bp 1 0.515781656767791 1 0.878856837749481 experiment 0.968436686464419 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36593920 chr19:36593925 synonymous SNV . 0 26 hm5C_associated_SNPs_35627 0 0 1 0 2 WDR62 chr19:36593850 3'AG 36593850 Downstream 76bp
chr19 36593925 36593925 1 + C T SKCM 36593920 + 36593900 36593940 41 CAGAGGTCAAGCTCATGGACCGAGGCGGAAGCCAGCCCAGA CAGAGGTCAAGCTCATGGACCGAGGTGGAAGCCAGCCCAGA < 41bp 1 0.515781656767791 1 0.878856837749481 experiment 0.968436686464419 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36593920 chr19:36593925 synonymous SNV . 0 26 hm5C_associated_SNPs_35627 0 0 1 0 2 WDR62 chr19:36593976 5'GT 36593976 Upstream 52bp
chr17 7606099 7606099 1 + T G SKCM 7606087 + 7606067 7606107 41 GAGCTCCTGTGCTGGGATCTCCGGCAGTCTGGTTACCCACT GAGCTCCTGTGCTGGGATCTCCGGCAGTCTGGGTACCCACT < 41bp 1 0.437309609759539 1 0.812788486480713 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7606087 chr17:7606099 synonymous SNV . 0 33 hm5C_associated_SNPs_35628 0 0 1 0 2 WRAP53 chr17:7606061 3'AG 7606061 Downstream 39bp
chr17 7606099 7606099 1 + T G SKCM 7606087 + 7606067 7606107 41 GAGCTCCTGTGCTGGGATCTCCGGCAGTCTGGTTACCCACT GAGCTCCTGTGCTGGGATCTCCGGCAGTCTGGGTACCCACT < 41bp 1 0.437309609759539 1 0.812788486480713 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7606087 chr17:7606099 synonymous SNV . 0 33 hm5C_associated_SNPs_35628 0 0 1 0 2 WRAP53 chr17:7606164 5'GT 7606164 Upstream 66bp
chr6 32134488 32134488 1 + C A SKCM 32134481 + 32134461 32134501 41 CGGGCGCTGTGTTCCAGGACCATGTACCGCGTTATGTGGCG CGGGCGCTGTGTTCCAGGACCATGTACAGCGTTATGTGGCG < 41bp 1 0.182727591193235 1 0.230437338352203 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134481 chr6:32134488 nonsynonymous SNV 0.224 1 28 hm5C_associated_SNPs_35629 0 0 1 0 2 EGFL8 chr6:32134478 3'AG 32134478 Downstream 11bp
chr6 32134488 32134488 1 + C A SKCM 32134481 + 32134461 32134501 41 CGGGCGCTGTGTTCCAGGACCATGTACCGCGTTATGTGGCG CGGGCGCTGTGTTCCAGGACCATGTACAGCGTTATGTGGCG < 41bp 1 0.182727591193235 1 0.230437338352203 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134481 chr6:32134488 nonsynonymous SNV 0.224 1 28 hm5C_associated_SNPs_35629 0 0 1 0 2 EGFL8 chr6:32134587 5'GT 32134587 Upstream 100bp
chr17 7606100 7606100 1 + T G SKCM 7606087 + 7606067 7606107 41 GAGCTCCTGTGCTGGGATCTCCGGCAGTCTGGTTACCCACT GAGCTCCTGTGCTGGGATCTCCGGCAGTCTGGTGACCCACT < 41bp 1 0.444248880225061 1 0.882537722587585 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7606087 chr17:7606100 nonsynonymous SNV 0.605 0 34 hm5C_associated_SNPs_35630 0 0 1 0 2 WRAP53 chr17:7606061 3'AG 7606061 Downstream 40bp
chr17 7606100 7606100 1 + T G SKCM 7606087 + 7606067 7606107 41 GAGCTCCTGTGCTGGGATCTCCGGCAGTCTGGTTACCCACT GAGCTCCTGTGCTGGGATCTCCGGCAGTCTGGTGACCCACT < 41bp 1 0.444248880225061 1 0.882537722587585 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7606087 chr17:7606100 nonsynonymous SNV 0.605 0 34 hm5C_associated_SNPs_35630 0 0 1 0 2 WRAP53 chr17:7606164 5'GT 7606164 Upstream 65bp
chr10 103310575 103310575 1 + C T SKCM 103310555 + 103310535 103310575 41 TCTGGGACTTCCTAAATGATCCAGCTGCCCAAGCTGAACCC TCTGGGACTTCCTAAATGATCCAGCTGCCCAAGCTGAACCT < 41bp 1 0.328682282603454 1 0.189607858657837 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BTRC ENSG00000166167 CDS Human protein_coding chr10:103310555 chr10:103310575 synonymous SNV . 0 41 hm5C_associated_SNPs_35631 0 0 0 0 1 BTRC chr10:103310648 5'GT 103310648 Upstream 74bp
chr21 42629153 42629153 1 + C T SKCM 42629163 + 42629143 42629183 41 TTTCCCCATCCACAAATGCGCTGGTGATCGGTGCCACGGTG TTTCCCCATCTACAAATGCGCTGGTGATCGGTGCCACGGTG < 41bp 1 0.549117451406282 1 0.285783290863037 experiment 0.901765097187436 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BACE2 ENSG00000182240 CDS Human protein_coding chr21:42629163 chr21:42629153 synonymous SNV . 0 11 hm5C_associated_SNPs_35632 0 0 1 0 1 BACE2 chr21:42629085 3'AG 42629085 Downstream 69bp
chr17 41345575 41345575 1 + C T SKCM 41345576 + 41345556 41345596 41 TATCATAGTAGATCCTTTCCCCTCCGAAGAGAGCCCTGATA TATCATAGTAGATCCTTTCTCCTCCGAAGAGAGCCCTGATA < 41bp 1 0.185243430283763 1 0.334711968898773 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41345576 chr17:41345575 nonsynonymous SNV 0.736 0 20 hm5C_associated_SNPs_35633 0 0 1 0 1 NBR1 chr17:41345655 5'GT 41345655 Upstream 81bp
chr19 36278120 36278120 1 + C T SKCM 36278132 + 36278112 36278152 41 TCCTGCGCCCTGGGGGTGCCCCACCCCCGCCCCCTAAGAAC TCCTGCGCTCTGGGGGTGCCCCACCCCCGCCCCCTAAGAAC < 41bp 1 0.181628405302086 1 0.392002522945404 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36278132 chr19:36278120 nonsynonymous SNV 0.978 3 9 hm5C_associated_SNPs_35634 0 0 1 0 1 ARHGAP33 chr19:36278070 3'AG 36278070 Downstream 51bp
chr11 10772987 10772987 1 + C T SKCM 10772973 + 10772953 10772993 41 CCCCATCATGTCGCGGGGCTCCATCGAGATTCCCCTCCGGG CCCCATCATGTCGCGGGGCTCCATCGAGATTCCCTTCCGGG < 41bp 1 0.12618161318148 1 0.111461788415909 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTR9 ENSG00000198730 CDS Human protein_coding chr11:10772973 chr11:10772987 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_35635 0 0 1 0 1 CTR9 chr11:10773004 5'GT 10773004 Upstream 18bp
chr20 5154287 5154287 1 + T G SKCM 5154273 + 5154253 5154293 41 GCAGATGATACCCCGGAGGTCCTCAATAGGGCCCTTTCCAA GCAGATGATACCCCGGAGGTCCTCAATAGGGCCCGTTCCAA < 41bp 1 0.180700312387935 1 0.0490334033966064 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDS2 ENSG00000101290 CDS Human protein_coding chr20:5154273 chr20:5154287 nonsynonymous SNV 0.994 4 35 hm5C_associated_SNPs_35636 0 0 1 0 1 CDS2 chr20:5154305 5'GT 5154305 Upstream 19bp
chr1 37947358 37947358 1 + G C SKCM 37947350 + 37947330 37947370 41 GGGATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGG GGGATCGTGGTTTCCAACGACACATACCCTGACCTCCAAGG < 41bp 1 0.247980611204074 1 0.320084095001221 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947350 chr1:37947358 nonsynonymous SNV 0.809 4 29 hm5C_associated_SNPs_35637 0 0 0 0 1 ZC3H12A chr1:37947436 5'GT 37947436 Upstream 79bp
chr1 37947358 37947358 1 + G C SKCM 37947352 + 37947332 37947372 41 GATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGGCG GATCGTGGTTTCCAACGACACATACCCTGACCTCCAAGGCG < 41bp 1 0.119555218476951 1 0.205760896205902 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947352 chr1:37947358 nonsynonymous SNV 0.809 4 27 hm5C_associated_SNPs_35638 0 0 0 0 1 ZC3H12A chr1:37947436 5'GT 37947436 Upstream 79bp
chr6 36569554 36569554 1 + C T SKCM 36569553 + 36569533 36569573 41 AAATCACAAGCCGTCCCGATCCTTCTCTAGGTCTCGTAGGT AAATCACAAGCCGTCCCGATCTTTCTCTAGGTCTCGTAGGT < 41bp 1 0.0682784626393275 1 0.0434295535087585 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36569553 chr6:36569554 synonymous SNV . 0 22 hm5C_associated_SNPs_35639 0 0 1 0 2 SRSF3 chr6:36569485 3'AG 36569485 Downstream 70bp
chr6 36569554 36569554 1 + C T SKCM 36569553 + 36569533 36569573 41 AAATCACAAGCCGTCCCGATCCTTCTCTAGGTCTCGTAGGT AAATCACAAGCCGTCCCGATCTTTCTCTAGGTCTCGTAGGT < 41bp 1 0.0682784626393275 1 0.0434295535087585 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36569553 chr6:36569554 synonymous SNV . 0 22 hm5C_associated_SNPs_35639 0 0 1 0 2 SRSF3 chr6:36569571 5'GT 36569571 Upstream 18bp
chr3 183899730 183899730 1 + C T SKCM 183899728 + 183899708 183899748 41 CAACCAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTA CAACCAAGGACATCATCCTTCCTTTCCGGGTGATCCCGCTA < 41bp 1 0.0354652148700646 1 0.0369618237018585 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899728 chr3:183899730 synonymous SNV . 0 23 hm5C_associated_SNPs_35641 0 0 1 0 1 AP2M1 chr3:183899700 3'AG 183899700 Downstream 31bp
chr3 183899730 183899730 1 + C T SKCM 183899729 + 183899709 183899749 41 AACCAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAG AACCAAGGACATCATCCTTCCTTTCCGGGTGATCCCGCTAG < 41bp 1 0.0867653719818167 1 0.037486732006073 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899729 chr3:183899730 synonymous SNV . 0 22 hm5C_associated_SNPs_35642 0 0 1 0 1 AP2M1 chr3:183899700 3'AG 183899700 Downstream 31bp
chr3 183899730 183899730 1 + C T SKCM 183899733 + 183899713 183899753 41 AAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAGTGCG AAGGACATCATCCTTCCTTTCCGGGTGATCCCGCTAGTGCG < 41bp 1 0.72553113595528 1 0.770242810249329 experiment 0.548937728089441 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899733 chr3:183899730 synonymous SNV . 0 18 hm5C_associated_SNPs_35643 0 0 1 0 1 AP2M1 chr3:183899700 3'AG 183899700 Downstream 31bp
chr1 17272860 17272860 1 + T C SKCM 17272843 + 17272823 17272863 41 GACTCCCTGTCCAAGCTGAGCGCCCTCAACGAGAGCCTTGC GACTCCCTGTCCAAGCTGAGCGCCCTCAACGAGAGCCCTGC < 41bp 1 0.161673112026895 1 0.0517536401748657 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CROCC ENSG00000058453 CDS Human protein_coding chr1:17272843 chr1:17272860 nonsynonymous SNV 0.974 3 38 hm5C_associated_SNPs_35645 0 0 0 0 1 CROCC chr1:17272900 5'GT 17272900 Upstream 41bp
chr11 17316984 17316984 1 + C T SKCM 17316973 + 17316953 17316993 41 ACATAGACAAGACAAAAGTACAAAATATTCACCCTGTGGAA ACATAGACAAGACAAAAGTACAAAATATTCATCCTGTGGAA < 41bp 1 0.673479078931092 1 0.0749988257884979 experiment 0.653041842137816 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUCB2 ENSG00000070081 CDS Human protein_coding chr11:17316973 chr11:17316984 synonymous SNV . 0 32 hm5C_associated_SNPs_35646 0 0 1 0 1 NUCB2 chr11:17317014 5'GT 17317014 Upstream 31bp
chr19 32973073 32973073 1 + C T SKCM 32973083 + 32973063 32973103 41 AACCTGCCTCCCTACGTGGCCTACTTCACCAGAGTGTTCCA AACCTGCCTCTCTACGTGGCCTACTTCACCAGAGTGTTCCA < 41bp 1 0.215080503222541 1 0.114098608493805 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DPY19L3 ENSG00000178904 CDS Human protein_coding chr19:32973083 chr19:32973073 nonsynonymous SNV 0.845 1 11 hm5C_associated_SNPs_35649 0 0 1 0 1 DPY19L3 chr19:32972985 3'AG 32972985 Downstream 89bp
chr1 7861197 7861197 1 + G A SKCM 7861204 + 7861184 7861224 41 CCAGTGAATAAAAGAATCTTCACCACCACACACACCCCAGG CCAGTGAATAAAAAAATCTTCACCACCACACACACCCCAGG < 41bp 1 0.552711925853122 1 0.326146960258484 experiment 0.894576148293755 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PER3 ENSG00000049246 CDS Human protein_coding chr1:7861204 chr1:7861197 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_35650 0 0 0 0 2 PER3 chr1:7861173 3'AG 7861173 Downstream 25bp
chr1 7861197 7861197 1 + G A SKCM 7861204 + 7861184 7861224 41 CCAGTGAATAAAAGAATCTTCACCACCACACACACCCCAGG CCAGTGAATAAAAAAATCTTCACCACCACACACACCCCAGG < 41bp 1 0.552711925853122 1 0.326146960258484 experiment 0.894576148293755 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PER3 ENSG00000049246 CDS Human protein_coding chr1:7861204 chr1:7861197 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_35650 0 0 0 0 2 PER3 chr1:7861251 5'GT 7861251 Upstream 55bp
chr2 220355655 220355655 1 + G A SKCM 220355636 + 220355616 220355656 41 AGCCCTACAACCCCCAGGCCCTTAGGCCCCTTGGCCACCGC AGCCCTACAACCCCCAGGCCCTTAGGCCCCTTGGCCACCAC < 41bp 1 0.106307695565093 1 0.071961373090744 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220355636 chr2:220355655 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_35651 0 0 0 0 1 SPEG chr2:220355678 5'GT 220355678 Upstream 24bp
chr2 220355655 220355655 1 + G A SKCM 220355643 + 220355623 220355663 41 CAACCCCCAGGCCCTTAGGCCCCTTGGCCACCGCACGGGCA CAACCCCCAGGCCCTTAGGCCCCTTGGCCACCACACGGGCA < 41bp 1 0.0208127689954813 1 0.0447937548160553 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220355643 chr2:220355655 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_35652 0 0 0 0 1 SPEG chr2:220355678 5'GT 220355678 Upstream 24bp
chr17 16332214 16332214 1 + C T SKCM 16332211 + 16332191 16332231 41 GTACCTGCCCCTGCTTGTGTCTGCGCTGGTGCTGGGCTGGC GTACCTGCCCCTGCTTGTGTCTGTGCTGGTGCTGGGCTGGC < 41bp 1 0.434288688721578 1 0.274672657251358 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16332211 chr17:16332214 nonsynonymous SNV 0.320 3 24 hm5C_associated_SNPs_35655 0 0 0 0 2 TRPV2 chr17:16332131 3'AG 16332131 Downstream 84bp
chr17 16332214 16332214 1 + C T SKCM 16332211 + 16332191 16332231 41 GTACCTGCCCCTGCTTGTGTCTGCGCTGGTGCTGGGCTGGC GTACCTGCCCCTGCTTGTGTCTGTGCTGGTGCTGGGCTGGC < 41bp 1 0.434288688721578 1 0.274672657251358 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16332211 chr17:16332214 nonsynonymous SNV 0.320 3 24 hm5C_associated_SNPs_35655 0 0 0 0 2 TRPV2 chr17:16332296 5'GT 16332296 Upstream 83bp
chr15 93496705 93496705 1 + C T SKCM 93496712 + 93496692 93496732 41 TCTTATAGTCGTCCCTTTATCCACCCTCACCTCATGGCAGA TCTTATAGTCGTCTCTTTATCCACCCTCACCTCATGGCAGA < 41bp 1 0.204565257136885 1 0.780890285968781 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93496712 chr15:93496705 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_35656 0 0 1 0 1 CHD2 chr15:93496803 5'GT 93496803 Upstream 99bp
chr16 3117520 3117520 1 + C T SKCM 3117519 + 3117499 3117539 41 GACCCTGGAGGGACAAGGATCCGGCCCTTTGGTGCCAACTC GACCCTGGAGGGACAAGGATCTGGCCCTTTGGTGCCAACTC < 41bp 1 0.717805056608785 1 0.512497842311859 experiment 0.564389886782429 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IL32 ENSG00000008517 CDS Human protein_coding chr16:3117519 chr16:3117520 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_35657 0 0 1 0 1 IL32 chr16:3117614 5'GT 3117614 Upstream 95bp
chr7 142460392 142460392 1 + C T SKCM 142460373 + 142460353 142460393 41 CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCTT < 41bp 1 0.237310671379042 1 0.0893510282039642 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460373 chr7:142460392 nonsynonymous SNV 0.068 5 40 hm5C_associated_SNPs_35658 0 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 27bp
chr7 142460392 142460392 1 + C T SKCM 142460379 + 142460359 142460399 41 AAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG AAGATTACCAGCAACATGTTCTGTGTGGGCTTCTTTGAGGG < 41bp 1 0.308639076920352 1 0.542150378227234 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460379 chr7:142460392 nonsynonymous SNV 0.068 5 34 hm5C_associated_SNPs_35659 0 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 27bp
chr7 142460392 142460392 1 + C T SKCM 142460388 + 142460368 142460408 41 AGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA AGCAACATGTTCTGTGTGGGCTTCTTTGAGGGAGGCAAGGA < 41bp 1 0.187324027844924 1 0.0771230757236481 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460388 chr7:142460392 nonsynonymous SNV 0.068 5 25 hm5C_associated_SNPs_35660 0 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 27bp
chr7 142460392 142460392 1 + C T SKCM 142460391 + 142460371 142460411 41 AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC AACATGTTCTGTGTGGGCTTCTTTGAGGGAGGCAAGGATTC < 41bp 1 0.0881245383952227 1 0.189263254404068 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460391 chr7:142460392 nonsynonymous SNV 0.068 5 22 hm5C_associated_SNPs_35661 0 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 27bp
chr7 142460392 142460392 1 + C T SKCM 142460403 + 142460383 142460423 41 GTGGGCTTCCTTGAGGGAGGCAAGGATTCATGTCAGGTGAT GTGGGCTTCTTTGAGGGAGGCAAGGATTCATGTCAGGTGAT < 41bp 1 0.536484735386141 1 0.392169713973999 experiment 0.927030529227717 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460403 chr7:142460392 nonsynonymous SNV 0.068 5 10 hm5C_associated_SNPs_35662 0 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 27bp
chr7 142460392 142460392 1 + C T SKCM 142460411 + 142460391 142460431 41 CCTTGAGGGAGGCAAGGATTCATGTCAGGTGATTTGACCAA CTTTGAGGGAGGCAAGGATTCATGTCAGGTGATTTGACCAA < 41bp 1 0.503879286855714 1 0.242304503917694 experiment 0.992241426288571 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460411 chr7:142460392 nonsynonymous SNV 0.068 5 2 hm5C_associated_SNPs_35663 0 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 27bp
chr3 124053168 124053168 1 + G A SKCM 124053164 + 124053144 124053184 41 GCTGCAGCGGCCCCTGAGCCCTGGGAACTCCGAATCCCTCA GCTGCAGCGGCCCCTGAGCCCTGGAAACTCCGAATCCCTCA < 41bp 1 0.725900214214894 1 0.835107326507568 experiment 0.548199571570211 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KALRN ENSG00000160145 CDS Human protein_coding chr3:124053164 chr3:124053168 synonymous SNV . 0 25 hm5C_associated_SNPs_35664 0 0 0 0 1 KALRN chr3:124053112 3'AG 124053112 Downstream 57bp
chr16 29851524 29851524 1 + C T SKCM 29851532 + 29851512 29851552 41 TTTTCCTCCAGCCAGGAGAGCAGCTGGAACAAGGCATCCAG TTTTCCTCCAGCTAGGAGAGCAGCTGGAACAAGGCATCCAG < 41bp 1 0.426839661730093 1 0.483132392168045 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29851532 chr16:29851524 nonsynonymous SNV 0.984 2 13 hm5C_associated_SNPs_35665 0 0 1 1 2 MVP chr16:29851499 3'AG 29851499 Downstream 26bp
chr16 29851524 29851524 1 + C T SKCM 29851532 + 29851512 29851552 41 TTTTCCTCCAGCCAGGAGAGCAGCTGGAACAAGGCATCCAG TTTTCCTCCAGCTAGGAGAGCAGCTGGAACAAGGCATCCAG < 41bp 1 0.426839661730093 1 0.483132392168045 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29851532 chr16:29851524 nonsynonymous SNV 0.984 2 13 hm5C_associated_SNPs_35665 0 0 1 1 2 MVP chr16:29851508 3'AG 29851508 Downstream 17bp
chr14 69704381 69704381 1 + C T SKCM 69704365 + 69704345 69704385 41 ACCACAACTCCCACGATGTGCTGCTGCTCTGCACCTCCTGC ACCACAACTCCCACGATGTGCTGCTGCTCTGCACCTTCTGC < 41bp 1 0.484751882825781 1 0.0944666266441345 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EXD2 ENSG00000081177 CDS Human protein_coding chr14:69704365 chr14:69704381 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_35666 0 0 1 0 1 EXD2 chr14:69704292 3'AG 69704292 Downstream 90bp
chrX 47442821 47442821 1 + C T SKCM 47442822 + 47442802 47442842 41 CACAGAACCCACCATGGCCCCCTTTGAGCCCCTGGCTTCTG CACAGAACCCACCATGGCCTCCTTTGAGCCCCTGGCTTCTG < 41bp 1 0.0670842914147887 1 0.0358971357345581 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TIMP1 ENSG00000102265 CDS Human protein_coding chrX:47442822 chrX:47442821 nonsynonymous SNV 0.103 1 20 hm5C_associated_SNPs_35667 0 0 1 0 1 TIMP1 chrX:47442807 3'AG 47442807 Downstream 15bp
chr9 138678108 138678108 1 + C T SKCM 138678113 + 138678093 138678133 41 GGGGCCCTGGGGCTCCCGCGCTGGCACCGGAGGCAGCTCCC GGGGCCCTGGGGCTCTCGCGCTGGCACCGGAGGCAGCTCCC < 41bp 1 0.654720850662054 1 0.417216897010803 experiment 0.690558298675893 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNT1 ENSG00000107147 CDS Human protein_coding chr9:138678113 chr9:138678108 synonymous SNV . 0 16 hm5C_associated_SNPs_35669 0 0 0 0 1 KCNT1 chr9:138678043 3'AG 138678043 Downstream 66bp
chr11 46747451 46747451 1 + G A SKCM 46747436 + 46747416 46747456 41 TCAAGTCACTGTAGCGATGACTCCACGCTCCGAAGGCTCCA TCAAGTCACTGTAGCGATGACTCCACGCTCCGAAGACTCCA < 41bp 1 0.681105693264752 1 0.950963020324707 experiment 0.637788613470496 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control F2 ENSG00000180210 CDS Human protein_coding chr11:46747436 chr11:46747451 nonsynonymous SNV 0.003 1 36 hm5C_associated_SNPs_35670 0 0 1 0 1 F2 chr11:46747409 3'AG 46747409 Downstream 43bp
chr1 32620255 32620255 1 + C T SKCM 32620246 + 32620226 32620266 41 GAAGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGA GAAGAGCTATAAGAACAATGCTCTAAACCTTGAAGAAATGA < 41bp 1 0.301764287226811 1 0.153964400291443 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620246 chr1:32620255 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_35671 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 67bp
chr1 32620255 32620255 1 + C T SKCM 32620246 + 32620226 32620266 41 GAAGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGA GAAGAGCTATAAGAACAATGCTCTAAACCTTGAAGAAATGA < 41bp 1 0.301764287226811 1 0.153964400291443 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620246 chr1:32620255 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_35671 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 68bp
chr1 32620255 32620255 1 + C T SKCM 32620248 + 32620228 32620268 41 AGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGAGA AGAGCTATAAGAACAATGCTCTAAACCTTGAAGAAATGAGA < 41bp 1 0.265400342327872 1 0.15167760848999 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620248 chr1:32620255 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_35672 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 67bp
chr1 32620255 32620255 1 + C T SKCM 32620248 + 32620228 32620268 41 AGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGAGA AGAGCTATAAGAACAATGCTCTAAACCTTGAAGAAATGAGA < 41bp 1 0.265400342327872 1 0.15167760848999 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620248 chr1:32620255 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_35672 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 68bp
chr1 32620255 32620255 1 + C T SKCM 32620253 + 32620233 32620273 41 TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAG TATAAGAACAATGCTCTAAACCTTGAAGAAATGAGACGAAG < 41bp 1 0.07679945085659 1 0.132913112640381 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620253 chr1:32620255 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_35673 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 67bp
chr1 32620255 32620255 1 + C T SKCM 32620253 + 32620233 32620273 41 TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAG TATAAGAACAATGCTCTAAACCTTGAAGAAATGAGACGAAG < 41bp 1 0.07679945085659 1 0.132913112640381 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620253 chr1:32620255 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_35673 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 68bp
chr1 32620255 32620255 1 + C T SKCM 32620254 + 32620234 32620274 41 ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAGA ATAAGAACAATGCTCTAAACCTTGAAGAAATGAGACGAAGA < 41bp 1 0.532764665974814 1 0.416230797767639 experiment 0.934470668050372 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620254 chr1:32620255 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_35674 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 67bp
chr1 32620255 32620255 1 + C T SKCM 32620254 + 32620234 32620274 41 ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAGA ATAAGAACAATGCTCTAAACCTTGAAGAAATGAGACGAAGA < 41bp 1 0.532764665974814 1 0.416230797767639 experiment 0.934470668050372 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620254 chr1:32620255 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_35674 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 68bp
chr6 44121498 44121498 1 + C T SKCM 44121489 + 44121469 44121509 41 TACCTGCCGGCCAAGCTGGACAAGAAGATCCACTCGGGGGC TACCTGCCGGCCAAGCTGGACAAGAAGATTCACTCGGGGGC < 41bp 1 0.688837150187868 1 0.370048314332962 experiment 0.622325699624264 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44121489 chr6:44121498 synonymous SNV . 0 30 hm5C_associated_SNPs_35681 0 0 1 0 2 TMEM63B chr6:44121413 3'AG 44121413 Downstream 86bp
chr6 44121498 44121498 1 + C T SKCM 44121489 + 44121469 44121509 41 TACCTGCCGGCCAAGCTGGACAAGAAGATCCACTCGGGGGC TACCTGCCGGCCAAGCTGGACAAGAAGATTCACTCGGGGGC < 41bp 1 0.688837150187868 1 0.370048314332962 experiment 0.622325699624264 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44121489 chr6:44121498 synonymous SNV . 0 30 hm5C_associated_SNPs_35681 0 0 1 0 2 TMEM63B chr6:44121580 5'GT 44121580 Upstream 83bp
chr3 148714585 148714585 1 + C A SKCM 148714596 + 148714576 148714616 41 AGCACCAGACCCAGGGTGGCCTGACTGCTTCAATTCCGGAG AGCACCAGAACCAGGGTGGCCTGACTGCTTCAATTCCGGAG < 41bp 1 0.405980559485882 1 0.335074067115784 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GYG1 ENSG00000163754 CDS Human protein_coding chr3:148714596 chr3:148714585 nonsynonymous SNV 0.998 4 10 hm5C_associated_SNPs_35682 0 0 0 0 2 GYG1 chr3:148714529 3'AG 148714529 Downstream 57bp
chr3 148714585 148714585 1 + C A SKCM 148714596 + 148714576 148714616 41 AGCACCAGACCCAGGGTGGCCTGACTGCTTCAATTCCGGAG AGCACCAGAACCAGGGTGGCCTGACTGCTTCAATTCCGGAG < 41bp 1 0.405980559485882 1 0.335074067115784 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GYG1 ENSG00000163754 CDS Human protein_coding chr3:148714596 chr3:148714585 nonsynonymous SNV 0.998 4 10 hm5C_associated_SNPs_35682 0 0 0 0 2 GYG1 chr3:148714679 5'GT 148714679 Upstream 95bp
chr11 76892609 76892609 1 + G A SKCM 76892615 + 76892595 76892635 41 GCCTGCCAGGCCAGGAGGGCCAGGCACCTAGTGGCTTTGAG GCCTGCCAGGCCAGAAGGGCCAGGCACCTAGTGGCTTTGAG < 41bp 1 0.281358033160488 1 0.527286410331726 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO7A ENSG00000137474 CDS Human protein_coding chr11:76892615 chr11:76892609 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_35683 0 0 1 0 1 MYO7A chr11:76892635 5'GT 76892635 Upstream 27bp
chr3 47041163 47041163 1 + C T SKCM 47041164 + 47041144 47041184 41 TGGCTGTGGTACAGCTGTCCCTCCAGGCTGACCTCAGCGTT TGGCTGTGGTACAGCTGTCTCTCCAGGCTGACCTCAGCGTT < 41bp 1 0.686610638846366 1 0.966305732727051 experiment 0.626778722307268 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041164 chr3:47041163 synonymous SNV . 0 20 hm5C_associated_SNPs_35684 0 0 1 0 2 NBEAL2 chr3:47041120 3'AG 47041120 Downstream 44bp
chr3 47041163 47041163 1 + C T SKCM 47041164 + 47041144 47041184 41 TGGCTGTGGTACAGCTGTCCCTCCAGGCTGACCTCAGCGTT TGGCTGTGGTACAGCTGTCTCTCCAGGCTGACCTCAGCGTT < 41bp 1 0.686610638846366 1 0.966305732727051 experiment 0.626778722307268 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041164 chr3:47041163 synonymous SNV . 0 20 hm5C_associated_SNPs_35684 0 0 1 0 2 NBEAL2 chr3:47041205 5'GT 47041205 Upstream 43bp
chr3 58118610 58118610 1 + G A SKCM 58118613 + 58118593 58118633 41 CACCCCATCTCAGGAGGGACCTTACATGGTCTCAGTTAAAT CACCCCATCTCAGGAGGAACCTTACATGGTCTCAGTTAAAT < 41bp 1 0.0256120464443696 1 0.361643612384796 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58118613 chr3:58118610 nonsynonymous SNV 0.994 5 18 hm5C_associated_SNPs_35687 0 0 1 0 2 FLNB chr3:58118535 3'AG 58118535 Downstream 76bp
chr3 58118610 58118610 1 + G A SKCM 58118613 + 58118593 58118633 41 CACCCCATCTCAGGAGGGACCTTACATGGTCTCAGTTAAAT CACCCCATCTCAGGAGGAACCTTACATGGTCTCAGTTAAAT < 41bp 1 0.0256120464443696 1 0.361643612384796 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58118613 chr3:58118610 nonsynonymous SNV 0.994 5 18 hm5C_associated_SNPs_35687 0 0 1 0 2 FLNB chr3:58118658 5'GT 58118658 Upstream 49bp
chr17 48153021 48153021 1 + C T SKCM 48153033 + 48153013 48153053 41 CGCTTTGCCGGCAGTGAGTCCGCTGTCTTCCACGGCTTCTT CGCTTTGCTGGCAGTGAGTCCGCTGTCTTCCACGGCTTCTT < 41bp 1 0.336294641556089 1 0.293543040752411 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48153033 chr17:48153021 synonymous SNV . 0 9 hm5C_associated_SNPs_35688 0 0 0 0 2 ITGA3 chr17:48152963 3'AG 48152963 Downstream 59bp
chr17 48153021 48153021 1 + C T SKCM 48153033 + 48153013 48153053 41 CGCTTTGCCGGCAGTGAGTCCGCTGTCTTCCACGGCTTCTT CGCTTTGCTGGCAGTGAGTCCGCTGTCTTCCACGGCTTCTT < 41bp 1 0.336294641556089 1 0.293543040752411 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48153033 chr17:48153021 synonymous SNV . 0 9 hm5C_associated_SNPs_35688 0 0 0 0 2 ITGA3 chr17:48153099 5'GT 48153099 Upstream 79bp
chr19 18971135 18971135 1 + C T SKCM 18971127 + 18971107 18971147 41 TACTTCTTTCCCTCCCCTCACAGCGGATCGTGTGAAGAAGG TACTTCTTTCCCTCCCCTCACAGCGGATTGTGTGAAGAAGG < 41bp 1 0.131877184868357 1 0.256570786237717 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18971127 chr19:18971135 nonsynonymous SNV 0.993 5 29 hm5C_associated_SNPs_35690 0 0 1 0 1 UPF1 chr19:18971130 3'AG 18971130 Downstream 6bp
chr10 103347150 103347150 1 - G A SKCM 103347146 - 103347126 103347166 41 CAGCAGCCCTGACCAACGCTCCAATAGGCCGGGATCCAGCC CAGCAGCCCTGACCAATGCTCCAATAGGCCGGGATCCAGCC < 41bp 1 0.294678828604122 1 0.0874148309230804 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLL ENSG00000166169;ENSG00000166171 UTR5 Human other chr10:103347146 chr10:103347150 . . 0 17 hm5C_associated_SNPs_35692 0 0 1 0 1 POLL chr10:103347163 3'AG 103347163 Downstream 14bp
chr1 228451886 228451886 1 + C T SKCM 228451881 + 228451861 228451901 41 GTGCAGGCTGAGGCGGGGACCAGTGCCACGCTGAGCTGCGA GTGCAGGCTGAGGCGGGGACCAGTGTCACGCTGAGCTGCGA < 41bp 1 0.121641165550238 1 0.742093563079834 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228451881 chr1:228451886 nonsynonymous SNV 0.124 3 26 hm5C_associated_SNPs_35694 0 0 0 0 1 OBSCN chr1:228451817 3'AG 228451817 Downstream 70bp
chr7 100210448 100210448 1 + G A SKCM 100210428 + 100210408 100210448 41 AGCCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGG AGCCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGA < 41bp 1 0.401941652838826 1 0.201620817184448 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210428 chr7:100210448 nonsynonymous SNV 1.000 0 41 hm5C_associated_SNPs_35695 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 96bp
chr7 100210448 100210448 1 + G A SKCM 100210430 + 100210410 100210450 41 CCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTG CCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGATG < 41bp 1 0.682503788097016 1 0.116262555122375 experiment 0.634992423805967 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210430 chr7:100210448 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_35696 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 96bp
chr7 100210448 100210448 1 + G A SKCM 100210431 + 100210411 100210451 41 CTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGG CTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGATGG < 41bp 1 0.497750840801774 1 0.623031556606293 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210431 chr7:100210448 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_35697 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 96bp
chr7 100210448 100210448 1 + G A SKCM 100210432 + 100210412 100210452 41 TGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGGG TGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGATGGG < 41bp 1 0.563773926568951 1 0.786584079265594 experiment 0.872452146862098 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210432 chr7:100210448 nonsynonymous SNV 1.000 0 37 hm5C_associated_SNPs_35698 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 96bp
chr7 100210448 100210448 1 + G A SKCM 100210460 + 100210440 100210480 41 AGGAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGG AGGAGCTGATGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGG < 41bp 1 0.256448140971733 1 0.175878494977951 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210460 chr7:100210448 nonsynonymous SNV 1.000 0 9 hm5C_associated_SNPs_35699 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 96bp
chr7 100210448 100210448 1 + G A SKCM 100210461 + 100210441 100210481 41 GGAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGG GGAGCTGATGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGG < 41bp 1 0.426946353863407 1 0.0667397975921631 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210461 chr7:100210448 nonsynonymous SNV 1.000 0 8 hm5C_associated_SNPs_35700 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 96bp
chr7 100210448 100210448 1 + G A SKCM 100210462 + 100210442 100210482 41 GAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGGG GAGCTGATGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGGG < 41bp 1 0.433786834256208 1 0.417752325534821 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210462 chr7:100210448 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_35701 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 96bp
chr7 100210448 100210448 1 + G A SKCM 100210463 + 100210443 100210483 41 AGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGGGC AGCTGATGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGGGC < 41bp 1 0.691536719107778 1 0.429372638463974 experiment 0.616926561784443 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210463 chr7:100210448 nonsynonymous SNV 1.000 0 6 hm5C_associated_SNPs_35702 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 96bp
chr7 100210447 100210447 1 + G A SKCM 100210428 + 100210408 100210448 41 AGCCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGG AGCCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTAG < 41bp 1 0.412937933299433 1 0.261059105396271 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210428 chr7:100210447 synonymous SNV . 0 40 hm5C_associated_SNPs_35704 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 95bp
chr7 100210447 100210447 1 + G A SKCM 100210430 + 100210410 100210450 41 CCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTG CCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTAGTG < 41bp 1 0.693965991203735 1 0.080296665430069 experiment 0.61206801759253 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210430 chr7:100210447 synonymous SNV . 0 38 hm5C_associated_SNPs_35705 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 95bp
chr7 100210447 100210447 1 + G A SKCM 100210431 + 100210411 100210451 41 CTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGG CTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTAGTGG < 41bp 1 0.477821422284051 1 0.557996034622192 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210431 chr7:100210447 synonymous SNV . 0 37 hm5C_associated_SNPs_35706 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 95bp
chr7 100210447 100210447 1 + G A SKCM 100210432 + 100210412 100210452 41 TGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGGG TGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTAGTGGG < 41bp 1 0.570164735093177 1 0.78409469127655 experiment 0.859670529813645 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210432 chr7:100210447 synonymous SNV . 0 36 hm5C_associated_SNPs_35707 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 95bp
chr7 100210447 100210447 1 + G A SKCM 100210460 + 100210440 100210480 41 AGGAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGG AGGAGCTAGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGG < 41bp 1 0.282708608468482 1 0.177844136953354 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210460 chr7:100210447 synonymous SNV . 0 8 hm5C_associated_SNPs_35708 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 95bp
chr7 100210447 100210447 1 + G A SKCM 100210461 + 100210441 100210481 41 GGAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGG GGAGCTAGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGG < 41bp 1 0.485840321108922 1 0.0942795872688293 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210461 chr7:100210447 synonymous SNV . 0 7 hm5C_associated_SNPs_35709 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 95bp
chr7 100210447 100210447 1 + G A SKCM 100210462 + 100210442 100210482 41 GAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGGG GAGCTAGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGGG < 41bp 1 0.413140003274783 1 0.423829525709152 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210462 chr7:100210447 synonymous SNV . 0 6 hm5C_associated_SNPs_35710 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 95bp
chr7 100210447 100210447 1 + G A SKCM 100210463 + 100210443 100210483 41 AGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGGGC AGCTAGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGGGC < 41bp 1 0.681004156935813 1 0.49571880698204 experiment 0.637991686128375 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210463 chr7:100210447 synonymous SNV . 0 5 hm5C_associated_SNPs_35711 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 95bp
chr1 228451887 228451887 1 + C T SKCM 228451881 + 228451861 228451901 41 GTGCAGGCTGAGGCGGGGACCAGTGCCACGCTGAGCTGCGA GTGCAGGCTGAGGCGGGGACCAGTGCTACGCTGAGCTGCGA < 41bp 1 0.124900841514316 1 0.763401508331299 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228451881 chr1:228451887 synonymous SNV . 0 27 hm5C_associated_SNPs_35712 0 0 0 0 1 OBSCN chr1:228451817 3'AG 228451817 Downstream 71bp
chr11 108205756 108205756 1 + C T SKCM 108205739 + 108205719 108205759 41 AAATCTGGTGACTATACAGTCATTTAAAGCAGAATTTCGCT AAATCTGGTGACTATACAGTCATTTAAAGCAGAATTTTGCT < 41bp 1 0.021401357729521 1 0.057466983795166 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108205739 chr11:108205756 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_35713 3 0 1 0 2 ATM chr11:108205696 3'AG 108205696 Downstream 61bp
chr11 108205756 108205756 1 + C T SKCM 108205739 + 108205719 108205759 41 AAATCTGGTGACTATACAGTCATTTAAAGCAGAATTTCGCT AAATCTGGTGACTATACAGTCATTTAAAGCAGAATTTTGCT < 41bp 1 0.021401357729521 1 0.057466983795166 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108205739 chr11:108205756 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_35713 3 0 1 0 2 ATM chr11:108205836 5'GT 108205836 Upstream 81bp
chr8 17406287 17406287 1 + G A SKCM 17406301 + 17406281 17406321 41 GTTTGTGAAAGGAAATGTGGCAAACTGGAAGATTAGTGAAG GTTTGTAAAAGGAAATGTGGCAAACTGGAAGATTAGTGAAG < 41bp 1 0.200764804275956 1 0.125482022762299 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17406301 chr8:17406287 synonymous SNV . 0 7 hm5C_associated_SNPs_35714 0 0 1 0 1 SLC7A2 chr8:17406352 5'GT 17406352 Upstream 66bp
chr19 13010515 13010515 1 + C T SKCM 13010519 + 13010499 13010539 41 ATTTCCCTTCTGAAGTCGTTCAGATGTGTTCCTTAAAAAGA ATTTCCCTTCTGAAGTTGTTCAGATGTGTTCCTTAAAAAGA < 41bp 1 0.426299906873722 1 0.401756882667542 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13010519 chr19:13010515 synonymous SNV . 0 17 hm5C_associated_SNPs_35715 0 0 1 1 1 GCDH chr19:13010514 3'AG 13010514 Downstream 2bp
chr5 147498055 147498055 1 + G A SKCM 147498044 + 147498024 147498064 41 CAAATGAAAAATGGAAGACTCAGCTGTACTCGGGAGAGTGA CAAATGAAAAATGGAAGACTCAGCTGTACTCAGGAGAGTGA < 41bp 1 0.402715299417649 1 0.330400109291077 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147498044 chr5:147498055 nonsynonymous SNV 0.993 2 32 hm5C_associated_SNPs_35716 0 0 0 0 2 SPINK5 chr5:147498000 3'AG 147498000 Downstream 56bp
chr5 147498055 147498055 1 + G A SKCM 147498044 + 147498024 147498064 41 CAAATGAAAAATGGAAGACTCAGCTGTACTCGGGAGAGTGA CAAATGAAAAATGGAAGACTCAGCTGTACTCAGGAGAGTGA < 41bp 1 0.402715299417649 1 0.330400109291077 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147498044 chr5:147498055 nonsynonymous SNV 0.993 2 32 hm5C_associated_SNPs_35716 0 0 0 0 2 SPINK5 chr5:147498127 5'GT 147498127 Upstream 73bp
chr19 19645929 19645929 1 + C T SKCM 19645936 + 19645916 19645956 41 CAGTGGGGCTGGTCTGTGCCCGGCACCTGCGGGTGTTTGTA CAGTGGGGCTGGTTTGTGCCCGGCACCTGCGGGTGTTTGTA < 41bp 1 0.751412317605319 1 0.438278347253799 experiment 0.497175364789361 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control YJEFN3 ENSG00000250067;ENSG00000258674 CDS Human other chr19:19645936 chr19:19645929 synonymous SNV . 0 14 hm5C_associated_SNPs_35717 0 0 1 0 1 YJEFN3 chr19:19645843 3'AG 19645843 Downstream 87bp
chr10 105172965 105172965 1 + C T SKCM 105172958 + 105172938 105172978 41 CTTCCTACAGCCTGGACGCCCACTCACCCGACTCTCTTGCC CTTCCTACAGCCTGGACGCCCACTCACTCGACTCTCTTGCC < 41bp 1 0.103664420961125 1 0.0678515434265137 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105172958 chr10:105172965 synonymous SNV . 0 28 hm5C_associated_SNPs_35718 0 0 1 0 1 PDCD11 chr10:105172873 3'AG 105172873 Downstream 93bp
chr2 27257076 27257076 1 + C T SKCM 27257075 + 27257055 27257095 41 AGCCAAAGAAGGTGGCAACTCCTCCCAACCAAAACCAGAAG AGCCAAAGAAGGTGGCAACTCTTCCCAACCAAAACCAGAAG < 41bp 1 0.264547108039882 1 0.53518158197403 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27257075 chr2:27257076 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_35720 0 0 1 0 1 TMEM214 chr2:27257134 5'GT 27257134 Upstream 59bp
chr19 10793360 10793360 1 + C T SKCM 10793361 + 10793341 10793381 41 CACCCCTAGTGCGGCCTTTCCCTCAGATGCCACTGCCGAGG CACCCCTAGTGCGGCCTTTTCCTCAGATGCCACTGCCGAGG < 41bp 1 0.592460326234451 1 0.236611098051071 experiment 0.815079347531098 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10793361 chr19:10793360 nonsynonymous SNV 0.589 0 20 hm5C_associated_SNPs_35721 0 0 1 0 1 ILF3 chr19:10793380 5'GT 10793380 Upstream 21bp
chr6 47577017 47577017 1 + A G SKCM 47577024 + 47577004 47577044 41 TGTTGTGCATTGTAGAAGCACTGAAAAAGGATCACGGGTAA TGTTGTGCATTGTGGAAGCACTGAAAAAGGATCACGGGTAA < 41bp 1 0.714343172671229 1 0.640170395374298 experiment 0.571313654657542 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47577024 chr6:47577017 synonymous SNV . 0 14 hm5C_associated_SNPs_35731 0 0 1 0 1 CD2AP chr6:47577040 5'GT 47577040 Upstream 24bp
chr6 47577017 47577017 1 + A G SKCM 47577036 + 47577016 47577056 41 TAGAAGCACTGAAAAAGGATCACGGGTAAGTAGCCCTTCTT TGGAAGCACTGAAAAAGGATCACGGGTAAGTAGCCCTTCTT < 41bp 1 0.731641318424329 1 0.844411134719849 experiment 0.536717363151342 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47577036 chr6:47577017 synonymous SNV . 0 2 hm5C_associated_SNPs_35732 0 0 1 0 1 CD2AP chr6:47577040 5'GT 47577040 Upstream 24bp
chr1 104115858 104115858 1 + C T SKCM 104115875 + 104115855 104115895 41 TATCGAGAACTACAATGATGCTACTCAGGTAAATTTTTTTA TATTGAGAACTACAATGATGCTACTCAGGTAAATTTTTTTA < 41bp 1 0.234048365430073 1 0.0725966095924377 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AMY2B ENSG00000240038 CDS Human protein_coding chr1:104115875 chr1:104115858 synonymous SNV . 0 4 hm5C_associated_SNPs_35735 0 0 0 0 1 AMY2B chr1:104115882 5'GT 104115882 Upstream 25bp
chr10 115644101 115644101 1 + C T SKCM 115644100 + 115644080 115644120 41 GAGCAAAAGGAGAACAACAACCCATTAGTTCCCCTTGGGAT GAGCAAAAGGAGAACAACAACTCATTAGTTCCCCTTGGGAT < 41bp 1 0.494833329270593 1 0.326154232025146 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115644100 chr10:115644101 nonsynonymous SNV 0.862 3 22 hm5C_associated_SNPs_35736 0 0 1 0 1 NHLRC2 chr10:115644139 5'GT 115644139 Upstream 39bp
chr16 70562803 70562803 1 + C T SKCM 70562823 + 70562803 70562843 41 CCCGTGGGAAGATCTTGGAGCTGCTTCGCCCAGACCCCAAC TCCGTGGGAAGATCTTGGAGCTGCTTCGCCCAGACCCCAAC < 41bp 1 0.306111700317482 1 0.108657568693161 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70562823 chr16:70562803 nonsynonymous SNV 0.997 2 1 hm5C_associated_SNPs_35737 0 0 1 0 1 SF3B3 chr16:70562776 3'AG 70562776 Downstream 28bp
chr3 47040859 47040859 1 + C T SKCM 47040844 + 47040824 47040864 41 AGAATGAGCGGCTACCTGAGCGGAGCCGCCAGCGCCTCCGG AGAATGAGCGGCTACCTGAGCGGAGCCGCCAGCGCTTCCGG < 41bp 1 0.519446277882381 1 0.879778146743774 experiment 0.961107444235238 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47040844 chr3:47040859 nonsynonymous SNV 0.444 1 36 hm5C_associated_SNPs_35743 0 0 1 0 1 NBEAL2 chr3:47040805 3'AG 47040805 Downstream 55bp
chr20 48568669 48568669 1 + C T SKCM 48568680 + 48568660 48568700 41 CTCCATCATCGACCAGTGAGCAGAGTCCGTGCTTGCTATCT CTCCATCATTGACCAGTGAGCAGAGTCCGTGCTTGCTATCT < 41bp 1 0.663102196898554 1 0.691442608833313 experiment 0.673795606202892 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF114 ENSG00000124226 CDS Human protein_coding chr20:48568680 chr20:48568669 synonymous SNV . 0 10 hm5C_associated_SNPs_35744 0 0 1 1 1 RNF114 chr20:48568613 3'AG 48568613 Downstream 57bp
chr5 179151733 179151733 1 + G A SKCM 179151747 + 179151727 179151767 41 GAGAAGGAAGAGGAAAAGGACAAGGGAGATGAGGAGGAGGA GAGAAGAAAGAGGAAAAGGACAAGGGAGATGAGGAGGAGGA < 41bp 1 0.781825070131269 1 0.54768830537796 experiment 0.436349859737461 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151747 chr5:179151733 nonsynonymous SNV 0.998 0 7 hm5C_associated_SNPs_35745 0 0 1 0 2 CANX chr5:179151658 3'AG 179151658 Downstream 76bp
chr5 179151733 179151733 1 + G A SKCM 179151747 + 179151727 179151767 41 GAGAAGGAAGAGGAAAAGGACAAGGGAGATGAGGAGGAGGA GAGAAGAAAGAGGAAAAGGACAAGGGAGATGAGGAGGAGGA < 41bp 1 0.781825070131269 1 0.54768830537796 experiment 0.436349859737461 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151747 chr5:179151733 nonsynonymous SNV 0.998 0 7 hm5C_associated_SNPs_35745 0 0 1 0 2 CANX chr5:179151784 5'GT 179151784 Upstream 52bp
chr20 45801390 45801390 1 + C T SKCM 45801382 + 45801362 45801402 41 AACTTCTCCGCTGACGGCTTCCACAGTTCGGCCCCAGGAGC AACTTCTCCGCTGACGGCTTCCACAGTTTGGCCCCAGGAGC < 41bp 1 0.311602519342878 1 0.347661018371582 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EYA2 ENSG00000064655 CDS Human protein_coding chr20:45801382 chr20:45801390 nonsynonymous SNV 0.362 3 29 hm5C_associated_SNPs_35746 0 0 0 0 1 EYA2 chr20:45801355 3'AG 45801355 Downstream 36bp
chr2 46803734 46803734 1 + G A SKCM 46803731 + 46803711 46803751 41 AGATGACCCCAAAACTTTAGCAAGACTGAATGATATGAAAG AGATGACCCCAAAACTTTAGCAAAACTGAATGATATGAAAG < 41bp 1 0.45970306589225 1 0.462357610464096 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHOQ ENSG00000119729 CDS Human protein_coding chr2:46803731 chr2:46803734 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_35748 0 0 0 0 2 RHOQ chr2:46803700 3'AG 46803700 Downstream 35bp
chr2 46803734 46803734 1 + G A SKCM 46803731 + 46803711 46803751 41 AGATGACCCCAAAACTTTAGCAAGACTGAATGATATGAAAG AGATGACCCCAAAACTTTAGCAAAACTGAATGATATGAAAG < 41bp 1 0.45970306589225 1 0.462357610464096 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHOQ ENSG00000119729 CDS Human protein_coding chr2:46803731 chr2:46803734 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_35748 0 0 0 0 2 RHOQ chr2:46803795 5'GT 46803795 Upstream 62bp
chrX 48369840 48369840 1 + C T SKCM 48369821 + 48369801 48369841 41 GCTGTTCCTCTGCCGACATTCCTCCCATCGAGGCGTCTTCC GCTGTTCCTCTGCCGACATTCCTCCCATCGAGGCGTCTTTC < 41bp 1 0.0853707223658385 1 0.0621182024478912 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PORCN ENSG00000102312 CDS Human protein_coding chrX:48369821 chrX:48369840 nonsynonymous SNV . 0 40 hm5C_associated_SNPs_35749 0 0 0 0 2 PORCN chrX:48369754 3'AG 48369754 Downstream 87bp
chrX 48369840 48369840 1 + C T SKCM 48369821 + 48369801 48369841 41 GCTGTTCCTCTGCCGACATTCCTCCCATCGAGGCGTCTTCC GCTGTTCCTCTGCCGACATTCCTCCCATCGAGGCGTCTTTC < 41bp 1 0.0853707223658385 1 0.0621182024478912 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PORCN ENSG00000102312 CDS Human protein_coding chrX:48369821 chrX:48369840 nonsynonymous SNV . 0 40 hm5C_associated_SNPs_35749 0 0 0 0 2 PORCN chrX:48369875 5'GT 48369875 Upstream 36bp
chr22 46681159 46681159 1 + A C SKCM 46681140 + 46681120 46681160 41 AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCGCTGAC AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCGCTGCC < 41bp 1 0.101608177750926 1 0.276779234409332 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC38 ENSG00000075234 CDS Human protein_coding chr22:46681140 chr22:46681159 nonsynonymous SNV 0.023 2 40 hm5C_associated_SNPs_35750 0 0 1 0 2 TTC38 chr22:46681138 3'AG 46681138 Downstream 22bp
chr22 46681159 46681159 1 + A C SKCM 46681140 + 46681120 46681160 41 AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCGCTGAC AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCGCTGCC < 41bp 1 0.101608177750926 1 0.276779234409332 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC38 ENSG00000075234 CDS Human protein_coding chr22:46681140 chr22:46681159 nonsynonymous SNV 0.023 2 40 hm5C_associated_SNPs_35750 0 0 1 0 2 TTC38 chr22:46681176 5'GT 46681176 Upstream 18bp
chr19 5041226 5041226 1 + C T SKCM 5041241 + 5041221 5041261 41 CCGATCTACGGGGCTGACATCAGCGGCTCTTTGTATGATGA CCGATTTACGGGGCTGACATCAGCGGCTCTTTGTATGATGA < 41bp 1 0.469289732022164 1 0.826545774936676 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KDM4B ENSG00000127663 CDS Human protein_coding chr19:5041241 chr19:5041226 synonymous SNV . 0 6 hm5C_associated_SNPs_35751 0 0 1 0 2 KDM4B chr19:5041148 3'AG 5041148 Downstream 79bp
chr19 5041226 5041226 1 + C T SKCM 5041241 + 5041221 5041261 41 CCGATCTACGGGGCTGACATCAGCGGCTCTTTGTATGATGA CCGATTTACGGGGCTGACATCAGCGGCTCTTTGTATGATGA < 41bp 1 0.469289732022164 1 0.826545774936676 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KDM4B ENSG00000127663 CDS Human protein_coding chr19:5041241 chr19:5041226 synonymous SNV . 0 6 hm5C_associated_SNPs_35751 0 0 1 0 2 KDM4B chr19:5041262 5'GT 5041262 Upstream 37bp
chr21 42769569 42769569 1 + T C SKCM 42769560 + 42769540 42769580 41 AGTTCTCCTGGAGGAGGGGTCAGCCACGGTTCCCCGACTGG AGTTCTCCTGGAGGAGGGGTCAGCCACGGCTCCCCGACTGG < 41bp 1 0.340707020298747 1 0.450921952724457 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MX2 ENSG00000183486 CDS Human protein_coding chr21:42769560 chr21:42769569 nonsynonymous SNV 0.866 4 30 hm5C_associated_SNPs_35752 0 0 0 0 1 MX2 chr21:42769618 5'GT 42769618 Upstream 50bp
chr19 14562718 14562718 1 + G A SKCM 14562705 + 14562685 14562725 41 ACCATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGG ACCATCCCGTGGAACCCTACCCCCTCAATGGGGAGACCTGG < 41bp 1 0.117350021018983 1 0.0575518012046814 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562705 chr19:14562718 nonsynonymous SNV 0.054 0 34 hm5C_associated_SNPs_35753 0 0 1 0 1 PKN1 chr19:14562641 3'AG 14562641 Downstream 78bp
chr19 14562718 14562718 1 + G A SKCM 14562706 + 14562686 14562726 41 CCATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGGG CCATCCCGTGGAACCCTACCCCCTCAATGGGGAGACCTGGG < 41bp 1 0.0505227857179753 1 0.251951158046722 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562706 chr19:14562718 nonsynonymous SNV 0.054 0 33 hm5C_associated_SNPs_35754 0 0 1 0 1 PKN1 chr19:14562641 3'AG 14562641 Downstream 78bp
chr19 14562718 14562718 1 + G A SKCM 14562708 + 14562688 14562728 41 ATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGGGAC ATCCCGTGGAACCCTACCCCCTCAATGGGGAGACCTGGGAC < 41bp 1 0.713313296170484 1 0.920813083648682 experiment 0.573373407659032 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562708 chr19:14562718 nonsynonymous SNV 0.054 0 31 hm5C_associated_SNPs_35755 0 0 1 0 1 PKN1 chr19:14562641 3'AG 14562641 Downstream 78bp
chr11 48164473 48164473 1 + C T SKCM 48164480 + 48164460 48164500 41 TTTTGTTTTAGATCCCCCTCCTCCAGATGGATCCCCTAATA TTTTGTTTTAGATTCCCCTCCTCCAGATGGATCCCCTAATA < 41bp 1 0.437829251923814 1 0.79524552822113 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48164480 chr11:48164473 nonsynonymous SNV 0.845 3 14 hm5C_associated_SNPs_35756 0 0 0 0 1 PTPRJ chr11:48164471 3'AG 48164471 Downstream 3bp
chr7 129946647 129946647 1 + G A SKCM 129946651 + 129946631 129946671 41 TATCTGATTACCAGAGGGATCCAGCTATCACCTCCATCTTG TATCTGATTACCAGAGAGATCCAGCTATCACCTCCATCTTG < 41bp 1 0.238645977561876 1 0.178705245256424 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129946651 chr7:129946647 synonymous SNV . 0 17 hm5C_associated_SNPs_35758 0 0 0 0 2 CPA4 chr7:129946627 3'AG 129946627 Downstream 21bp
chr7 129946647 129946647 1 + G A SKCM 129946651 + 129946631 129946671 41 TATCTGATTACCAGAGGGATCCAGCTATCACCTCCATCTTG TATCTGATTACCAGAGAGATCCAGCTATCACCTCCATCTTG < 41bp 1 0.238645977561876 1 0.178705245256424 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129946651 chr7:129946647 synonymous SNV . 0 17 hm5C_associated_SNPs_35758 0 0 0 0 2 CPA4 chr7:129946737 5'GT 129946737 Upstream 91bp
chr7 129946646 129946646 1 + G A SKCM 129946651 + 129946631 129946671 41 TATCTGATTACCAGAGGGATCCAGCTATCACCTCCATCTTG TATCTGATTACCAGAAGGATCCAGCTATCACCTCCATCTTG < 41bp 1 0.195130973045136 1 0.195187211036682 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129946651 chr7:129946646 nonsynonymous SNV 0.992 0 16 hm5C_associated_SNPs_35760 0 0 0 0 2 CPA4 chr7:129946627 3'AG 129946627 Downstream 20bp
chr7 129946646 129946646 1 + G A SKCM 129946651 + 129946631 129946671 41 TATCTGATTACCAGAGGGATCCAGCTATCACCTCCATCTTG TATCTGATTACCAGAAGGATCCAGCTATCACCTCCATCTTG < 41bp 1 0.195130973045136 1 0.195187211036682 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129946651 chr7:129946646 nonsynonymous SNV 0.992 0 16 hm5C_associated_SNPs_35760 0 0 0 0 2 CPA4 chr7:129946737 5'GT 129946737 Upstream 92bp
chr16 14041539 14041539 1 + C T SKCM 14041557 + 14041537 14041577 41 TTCCATCTCTGATCCATCGTCGGGGCATTGACATTGAACCC TTTCATCTCTGATCCATCGTCGGGGCATTGACATTGAACCC < 41bp 1 0.785398124377752 1 0.939283132553101 experiment 0.429203751244497 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ERCC4 ENSG00000175595 CDS Human protein_coding chr16:14041557 chr16:14041539 nonsynonymous SNV 0.994 4 3 hm5C_associated_SNPs_35761 0 0 1 0 1 ERCC4 chr16:14041471 3'AG 14041471 Downstream 69bp
chr19 11145668 11145668 1 + C T SKCM 11145669 + 11145649 11145689 41 CATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACG CATGGAGGAGGACGAGCTCTCCTCGTGGATCATCAAGGACG < 41bp 1 0.260598562043196 1 0.160362988710403 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145669 chr19:11145668 nonsynonymous SNV 0.260 5 20 hm5C_associated_SNPs_35762 0 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 79bp
chr19 11145668 11145668 1 + C T SKCM 11145672 + 11145652 11145692 41 GGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACGACG GGAGGAGGACGAGCTCTCCTCGTGGATCATCAAGGACGACG < 41bp 1 0.645792982263466 1 0.643541753292084 experiment 0.708414035473068 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145672 chr19:11145668 nonsynonymous SNV 0.260 5 17 hm5C_associated_SNPs_35763 0 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 79bp
chr19 50906828 50906828 1 + C T SKCM 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CGTACTTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT < 41bp 1 0.083334911327076 1 0.206457853317261 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906828 nonsynonymous SNV 0.976 4 6 hm5C_associated_SNPs_35764 0 0 1 1 2 POLD1 chr19:50906750 3'AG 50906750 Downstream 79bp
chr19 50906828 50906828 1 + C T SKCM 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CGTACTTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT < 41bp 1 0.083334911327076 1 0.206457853317261 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906828 nonsynonymous SNV 0.976 4 6 hm5C_associated_SNPs_35764 0 0 1 1 2 POLD1 chr19:50906854 5'GT 50906854 Upstream 27bp
chr1 3342247 3342247 1 + C T SKCM 3342250 + 3342230 3342270 41 AAGTGCCACCTGTGCAACCGCTGCTTCGGGCAGCAGACCAA AAGTGCCACCTGTGCAATCGCTGCTTCGGGCAGCAGACCAA < 41bp 1 0.425054968963701 1 0.295001000165939 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3342250 chr1:3342247 synonymous SNV . 0 18 hm5C_associated_SNPs_35766 0 0 0 0 1 PRDM16 chr1:3342314 5'GT 3342314 Upstream 68bp
chr19 50906827 50906827 1 + C T SKCM 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CGTATCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT < 41bp 1 0.0756452236639736 1 0.193235009908676 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906827 synonymous SNV . 0 5 hm5C_associated_SNPs_35767 0 0 1 1 2 POLD1 chr19:50906750 3'AG 50906750 Downstream 78bp
chr19 50906827 50906827 1 + C T SKCM 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CGTATCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT < 41bp 1 0.0756452236639736 1 0.193235009908676 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906827 synonymous SNV . 0 5 hm5C_associated_SNPs_35767 0 0 1 1 2 POLD1 chr19:50906854 5'GT 50906854 Upstream 28bp
chr6 159181735 159181735 1 + G A SKCM 159181716 + 159181696 159181736 41 CCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAAGCTGGT CCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAAGCTGAT < 41bp 1 0.608184646808245 1 0.215743631124496 experiment 0.783630706383511 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159181716 chr6:159181735 nonsynonymous SNV 0.038 0 40 hm5C_associated_SNPs_35771 0 0 0 0 2 SYTL3 chr6:159181672 3'AG 159181672 Downstream 64bp
chr6 159181735 159181735 1 + G A SKCM 159181716 + 159181696 159181736 41 CCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAAGCTGGT CCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAAGCTGAT < 41bp 1 0.608184646808245 1 0.215743631124496 experiment 0.783630706383511 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159181716 chr6:159181735 nonsynonymous SNV 0.038 0 40 hm5C_associated_SNPs_35771 0 0 0 0 2 SYTL3 chr6:159181777 5'GT 159181777 Upstream 43bp
chr20 49196259 49196259 1 + C T SKCM 49196243 + 49196223 49196263 41 CTTGCTGCTCTTTCAAGGATCAGTGGAAGGAGCTTTCCCAC CTTGCTGCTCTTTCAAGGATCAGTGGAAGGAGCTTTTCCAC < 41bp 1 0.561463627977916 1 0.644997179508209 experiment 0.877072744044169 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49196243 chr20:49196259 nonsynonymous SNV 0.993 4 37 hm5C_associated_SNPs_35772 0 0 1 0 1 PTPN1 chr20:49196240 3'AG 49196240 Downstream 20bp
chr4 79512753 79512753 1 + G A SKCM 79512760 + 79512740 79512780 41 CTGGTGACTTCCGGAAAGCTCTGTTGACTTTGGCAGATGTA CTGGTGACTTCCGAAAAGCTCTGTTGACTTTGGCAGATGTA < 41bp 1 0.220385798782702 1 0.0816450119018555 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79512760 chr4:79512753 synonymous SNV . 0 14 hm5C_associated_SNPs_35773 0 0 0 0 2 ANXA3 chr4:79512698 3'AG 79512698 Downstream 56bp
chr4 79512753 79512753 1 + G A SKCM 79512760 + 79512740 79512780 41 CTGGTGACTTCCGGAAAGCTCTGTTGACTTTGGCAGATGTA CTGGTGACTTCCGAAAAGCTCTGTTGACTTTGGCAGATGTA < 41bp 1 0.220385798782702 1 0.0816450119018555 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79512760 chr4:79512753 synonymous SNV . 0 14 hm5C_associated_SNPs_35773 0 0 0 0 2 ANXA3 chr4:79512777 5'GT 79512777 Upstream 25bp
chr2 27280274 27280274 1 + C T SKCM 27280287 + 27280267 27280307 41 GGCTTTCCCCTCCAGATACACTGTGGAACTATTTGAGCAGG GGCTTTCTCCTCCAGATACACTGTGGAACTATTTGAGCAGG < 41bp 1 0.598669227128437 1 0.492403745651245 experiment 0.802661545743126 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27280287 chr2:27280274 nonsynonymous SNV 0.998 4 8 hm5C_associated_SNPs_35774 0 0 1 1 1 AGBL5 chr2:27280306 5'GT 27280306 Upstream 33bp
chr15 64424071 64424071 1 + C T SKCM 64424067 + 64424047 64424087 41 GCTGAGCTCCTGAGTGACTACATTCGCCTCCTGGCCATAGT GCTGAGCTCCTGAGTGACTACATTTGCCTCCTGGCCATAGT < 41bp 1 0.124588769954819 1 0.077488511800766 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64424067 chr15:64424071 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_35778 0 0 1 0 1 SNX1 chr15:64424091 5'GT 64424091 Upstream 21bp
chr5 154174820 154174820 1 + C T SKCM 154174837 + 154174817 154174857 41 ACCCTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCAC ACCTTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCAC < 41bp 1 0.336651511717221 1 0.638973832130432 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154174837 chr5:154174820 nonsynonymous SNV 0.999 4 4 hm5C_associated_SNPs_35782 0 0 1 0 2 LARP1 chr5:154174735 3'AG 154174735 Downstream 86bp
chr5 154174820 154174820 1 + C T SKCM 154174837 + 154174817 154174857 41 ACCCTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCAC ACCTTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCAC < 41bp 1 0.336651511717221 1 0.638973832130432 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154174837 chr5:154174820 nonsynonymous SNV 0.999 4 4 hm5C_associated_SNPs_35782 0 0 1 0 2 LARP1 chr5:154174879 5'GT 154174879 Upstream 60bp
chr5 154174820 154174820 1 + C T SKCM 154174838 + 154174818 154174858 41 CCCTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCACT CCTTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCACT < 41bp 1 0.424446622974519 1 0.891297519207001 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154174838 chr5:154174820 nonsynonymous SNV 0.999 4 3 hm5C_associated_SNPs_35783 0 0 1 0 2 LARP1 chr5:154174735 3'AG 154174735 Downstream 86bp
chr5 154174820 154174820 1 + C T SKCM 154174838 + 154174818 154174858 41 CCCTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCACT CCTTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCACT < 41bp 1 0.424446622974519 1 0.891297519207001 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154174838 chr5:154174820 nonsynonymous SNV 0.999 4 3 hm5C_associated_SNPs_35783 0 0 1 0 2 LARP1 chr5:154174879 5'GT 154174879 Upstream 60bp
chr19 55817700 55817700 1 + C T SKCM 55817715 + 55817695 55817735 41 GTCTTCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTC GTCTTTCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTC < 41bp 1 0.131128498669312 1 0.136308223009109 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55817715 chr19:55817700 synonymous SNV . 0 6 hm5C_associated_SNPs_35784 0 0 0 0 1 BRSK1 chr19:55817620 3'AG 55817620 Downstream 81bp
chr19 55817700 55817700 1 + C T SKCM 55817719 + 55817699 55817739 41 TCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTCCTCT TTCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTCCTCT < 41bp 1 0.734222702471413 1 0.939152002334595 experiment 0.531554595057174 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55817719 chr19:55817700 synonymous SNV . 0 2 hm5C_associated_SNPs_35785 0 0 0 0 1 BRSK1 chr19:55817620 3'AG 55817620 Downstream 81bp
chr2 167108321 167108321 1 - C T SKCM 167108313 - 167108293 167108333 41 AGAAGAAGCAGAGGCTGAACCTATGAATTCCGATGAGCCAG AGAAGAAGCAGAAGCTGAACCTATGAATTCCGATGAGCCAG < 41bp 1 0.345800873876751 1 0.353359580039978 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SCN9A ENSG00000169432 CDS Human protein_coding chr2:167108313 chr2:167108321 synonymous SNV . 0 13 hm5C_associated_SNPs_35786 0 0 0 0 2 SCN9A chr2:167108275 5'GT 167108275 Upstream 47bp
chr2 167108321 167108321 1 - C T SKCM 167108313 - 167108293 167108333 41 AGAAGAAGCAGAGGCTGAACCTATGAATTCCGATGAGCCAG AGAAGAAGCAGAAGCTGAACCTATGAATTCCGATGAGCCAG < 41bp 1 0.345800873876751 1 0.353359580039978 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SCN9A ENSG00000169432 CDS Human protein_coding chr2:167108313 chr2:167108321 synonymous SNV . 0 13 hm5C_associated_SNPs_35786 0 0 0 0 2 SCN9A chr2:167108395 3'AG 167108395 Downstream 75bp
chr20 45801394 45801394 1 + C T SKCM 45801382 + 45801362 45801402 41 AACTTCTCCGCTGACGGCTTCCACAGTTCGGCCCCAGGAGC AACTTCTCCGCTGACGGCTTCCACAGTTCGGCTCCAGGAGC < 41bp 1 0.320979848172791 1 0.247623533010483 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EYA2 ENSG00000064655 CDS Human protein_coding chr20:45801382 chr20:45801394 synonymous SNV . 0 33 hm5C_associated_SNPs_35787 0 0 0 0 1 EYA2 chr20:45801355 3'AG 45801355 Downstream 40bp
chr14 24567503 24567503 1 + C T SKCM 24567497 + 24567477 24567517 41 CTTCTCAGCGGGACACGGTACAACTCCCGCCTGGTGGGGCC CTTCTCAGCGGGACACGGTACAACTCTCGCCTGGTGGGGCC < 41bp 1 0.645565266926595 1 0.0439099669456482 experiment 0.70886946614681 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCK2 ENSG00000100889 CDS Human protein_coding chr14:24567497 chr14:24567503 nonsynonymous SNV 0.423 1 27 hm5C_associated_SNPs_35788 0 0 1 0 1 PCK2 chr14:24567412 3'AG 24567412 Downstream 92bp
chr17 48551159 48551159 1 + G A SKCM 48551147 + 48551127 48551167 41 AGGACTTCTTTCACACACACCCGAAGGTGCAGGAAGTGCAG AGGACTTCTTTCACACACACCCGAAGGTGCAGAAAGTGCAG < 41bp 1 0.401275807748198 1 0.281169652938843 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48551147 chr17:48551159 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_35789 0 0 1 0 1 ACSF2 chr17:48551167 5'GT 48551167 Upstream 9bp
chr1 150957108 150957108 1 + G A SKCM 150957105 + 150957085 150957125 41 GGCCATTGAAATTCTTGCCACTCGAACCCCACCCCAGCTGC GGCCATTGAAATTCTTGCCACTCAAACCCCACCCCAGCTGC < 41bp 1 0.60311785356803 1 0.87690258026123 experiment 0.793764292863939 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANXA9 ENSG00000143412 CDS Human protein_coding chr1:150957105 chr1:150957108 nonsynonymous SNV 0.507 4 24 hm5C_associated_SNPs_35790 0 0 0 0 2 ANXA9 chr1:150957062 3'AG 150957062 Downstream 47bp
chr1 150957108 150957108 1 + G A SKCM 150957105 + 150957085 150957125 41 GGCCATTGAAATTCTTGCCACTCGAACCCCACCCCAGCTGC GGCCATTGAAATTCTTGCCACTCAAACCCCACCCCAGCTGC < 41bp 1 0.60311785356803 1 0.87690258026123 experiment 0.793764292863939 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANXA9 ENSG00000143412 CDS Human protein_coding chr1:150957105 chr1:150957108 nonsynonymous SNV 0.507 4 24 hm5C_associated_SNPs_35790 0 0 0 0 2 ANXA9 chr1:150957152 5'GT 150957152 Upstream 45bp
chr16 19460898 19460898 1 + C T SKCM 19460903 + 19460883 19460923 41 TGAAAGTGGTCCTGTCCATGCTTATGGAAACCCACCATTGT TGAAAGTGGTCCTGTTCATGCTTATGGAAACCCACCATTGT < 41bp 1 0.14974518267197 1 0.062269926071167 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMC5 ENSG00000103534 CDS Human protein_coding chr16:19460903 chr16:19460898 synonymous SNV . 0 16 hm5C_associated_SNPs_35791 0 0 1 0 2 TMC5 chr16:19460864 3'AG 19460864 Downstream 35bp
chr16 19460898 19460898 1 + C T SKCM 19460903 + 19460883 19460923 41 TGAAAGTGGTCCTGTCCATGCTTATGGAAACCCACCATTGT TGAAAGTGGTCCTGTTCATGCTTATGGAAACCCACCATTGT < 41bp 1 0.14974518267197 1 0.062269926071167 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMC5 ENSG00000103534 CDS Human protein_coding chr16:19460903 chr16:19460898 synonymous SNV . 0 16 hm5C_associated_SNPs_35791 0 0 1 0 2 TMC5 chr16:19460953 5'GT 19460953 Upstream 56bp
chr7 40102466 40102466 1 + C T SKCM 40102465 + 40102445 40102485 41 TAATTACTTTATGGTACCGTCCACCTGAACTGCTACTGGGA TAATTACTTTATGGTACCGTCTACCTGAACTGCTACTGGGA < 41bp 1 0.12286913123727 1 0.256635785102844 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:40102465 chr7:40102466 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_35792 0 0 1 0 2 CDK13 chr7:40102425 3'AG 40102425 Downstream 42bp
chr7 40102466 40102466 1 + C T SKCM 40102465 + 40102445 40102485 41 TAATTACTTTATGGTACCGTCCACCTGAACTGCTACTGGGA TAATTACTTTATGGTACCGTCTACCTGAACTGCTACTGGGA < 41bp 1 0.12286913123727 1 0.256635785102844 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:40102465 chr7:40102466 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_35792 0 0 1 0 2 CDK13 chr7:40102526 5'GT 40102526 Upstream 61bp
chr5 176519753 176519753 1 + C T SKCM 176519758 + 176519738 176519778 41 ATTCCATCGGCCTCTCCTACCAGTCTGCCTGGCTCACGGTG ATTCCATCGGCCTCTTCTACCAGTCTGCCTGGCTCACGGTG < 41bp 1 0.328800991472659 1 0.346539735794067 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176519758 chr5:176519753 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_35793 0 0 1 0 1 FGFR4 chr5:176519785 5'GT 176519785 Upstream 33bp
chr5 167943887 167943887 1 + C T SKCM 167943878 + 167943858 167943898 41 CATAACCGGTTGAATGACTACATCTTCTCCTTTGACAAAAT CATAACCGGTTGAATGACTACATCTTCTCTTTTGACAAAAT < 41bp 1 0.158967113186986 1 0.0727981925010681 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RARS ENSG00000113643 CDS Human protein_coding chr5:167943878 chr5:167943887 synonymous SNV . 0 30 hm5C_associated_SNPs_35795 0 0 1 0 1 RARS chr5:167943955 5'GT 167943955 Upstream 69bp
chr5 167943886 167943886 1 + C T SKCM 167943878 + 167943858 167943898 41 CATAACCGGTTGAATGACTACATCTTCTCCTTTGACAAAAT CATAACCGGTTGAATGACTACATCTTCTTCTTTGACAAAAT < 41bp 1 0.180382461553353 1 0.0742190778255463 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RARS ENSG00000113643 CDS Human protein_coding chr5:167943878 chr5:167943886 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_35796 0 0 1 0 1 RARS chr5:167943955 5'GT 167943955 Upstream 70bp
chr16 57075434 57075434 1 + C T SKCM 57075442 + 57075422 57075462 41 AAGCACCTAGAGCAGCTCTGCAAGGCTCTGGGAGGAAGCTG AAGCACCTAGAGTAGCTCTGCAAGGCTCTGGGAGGAAGCTG < 41bp 1 0.49838917746959 1 0.468200415372849 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57075442 chr16:57075434 stopgain 0.130 0 13 hm5C_associated_SNPs_35797 0 0 0 0 2 NLRC5 chr16:57075397 3'AG 57075397 Downstream 38bp
chr16 57075434 57075434 1 + C T SKCM 57075442 + 57075422 57075462 41 AAGCACCTAGAGCAGCTCTGCAAGGCTCTGGGAGGAAGCTG AAGCACCTAGAGTAGCTCTGCAAGGCTCTGGGAGGAAGCTG < 41bp 1 0.49838917746959 1 0.468200415372849 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57075442 chr16:57075434 stopgain 0.130 0 13 hm5C_associated_SNPs_35797 0 0 0 0 2 NLRC5 chr16:57075486 5'GT 57075486 Upstream 53bp
chr6 44218052 44218052 1 + A G SKCM 44218068 + 44218048 44218088 41 GGAAATTAGTGATGATGAGGCAGAGGAAGAGAAAGGTGAGA GGAAGTTAGTGATGATGAGGCAGAGGAAGAGAAAGGTGAGA < 41bp 1 0.484066856146706 1 0.6020427942276 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44218068 chr6:44218052 nonsynonymous SNV 0.999 0 5 hm5C_associated_SNPs_35798 0 0 1 0 1 HSP90AB1 chr6:44218028 3'AG 44218028 Downstream 25bp
chr1 28600569 28600569 1 + C T SKCM 28600565 + 28600545 28600585 41 CCTCAGCTGACATCCTGGAGCCCTCTCCACACCCAGACATG CCTCAGCTGACATCCTGGAGCCCTTTCCACACCCAGACATG < 41bp 1 0.0345315224914385 1 0.0134443044662476 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SESN2 ENSG00000130766 CDS Human protein_coding chr1:28600565 chr1:28600569 nonsynonymous SNV 0.989 0 25 hm5C_associated_SNPs_35799 0 0 1 0 1 SESN2 chr1:28600551 3'AG 28600551 Downstream 19bp
chr10 75542922 75542922 1 + C T SKCM 75542932 + 75542912 75542952 41 ACAGAGGTTTCCTAACAAACCTTACCTCAGCTGAAAATGGA ACAGAGGTTTTCTAACAAACCTTACCTCAGCTGAAAATGGA < 41bp 1 0.304368929965186 1 0.0479377806186676 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHCHD1 ENSG00000172586 CDS Human protein_coding chr10:75542932 chr10:75542922 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_35800 0 0 1 0 1 CHCHD1 chr10:75542832 3'AG 75542832 Downstream 91bp
chr10 17276785 17276785 1 + C T SKCM 17276805 + 17276785 17276825 41 CTCACCTGTGAAGTGGATGCCCTTAAAGGAACCGTGAGTAC TTCACCTGTGAAGTGGATGCCCTTAAAGGAACCGTGAGTAC < 41bp 1 0.140617227849125 1 0.02639240026474 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276805 chr10:17276785 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_35801 0 0 1 0 2 VIM chr10:17276692 3'AG 17276692 Downstream 94bp
chr10 17276785 17276785 1 + C T SKCM 17276805 + 17276785 17276825 41 CTCACCTGTGAAGTGGATGCCCTTAAAGGAACCGTGAGTAC TTCACCTGTGAAGTGGATGCCCTTAAAGGAACCGTGAGTAC < 41bp 1 0.140617227849125 1 0.02639240026474 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276805 chr10:17276785 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_35801 0 0 1 0 2 VIM chr10:17276817 5'GT 17276817 Upstream 33bp
chr16 57113043 57113043 1 + C T SKCM 57113028 + 57113008 57113048 41 CAGGCCCTGGATGGATCCCCCCATTTGGAAGAGATCAGGTA CAGGCCCTGGATGGATCCCCCCATTTGGAAGAGATTAGGTA < 41bp 1 0.0562125733262868 1 0.0617503225803375 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57113028 chr16:57113043 synonymous SNV . 0 36 hm5C_associated_SNPs_35802 0 0 0 0 2 NLRC5 chr16:57112962 3'AG 57112962 Downstream 82bp
chr16 57113043 57113043 1 + C T SKCM 57113028 + 57113008 57113048 41 CAGGCCCTGGATGGATCCCCCCATTTGGAAGAGATCAGGTA CAGGCCCTGGATGGATCCCCCCATTTGGAAGAGATTAGGTA < 41bp 1 0.0562125733262868 1 0.0617503225803375 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57113028 chr16:57113043 synonymous SNV . 0 36 hm5C_associated_SNPs_35802 0 0 0 0 2 NLRC5 chr16:57113045 5'GT 57113045 Upstream 3bp
chr22 24573553 24573553 1 + C A SKCM 24573545 + 24573525 24573565 41 AGTGAGACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAG AGTGAGACTCAGCCCCTGAGCTCTCCCCAAACAGCTGCCAG < 41bp 1 0.0928286032590255 1 0.329304128885269 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573545 chr22:24573553 nonsynonymous SNV 0.006 0 29 hm5C_associated_SNPs_35803 0 0 1 0 1 CABIN1 chr22:24573472 3'AG 24573472 Downstream 82bp
chr22 24573553 24573553 1 + C A SKCM 24573547 + 24573527 24573567 41 TGAGACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCT TGAGACTCAGCCCCTGAGCTCTCCCCAAACAGCTGCCAGCT < 41bp 1 0.145565554658435 1 0.170837581157684 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573547 chr22:24573553 nonsynonymous SNV 0.006 0 27 hm5C_associated_SNPs_35804 0 0 1 0 1 CABIN1 chr22:24573472 3'AG 24573472 Downstream 82bp
chr22 24573553 24573553 1 + C A SKCM 24573549 + 24573529 24573569 41 AGACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCC AGACTCAGCCCCTGAGCTCTCCCCAAACAGCTGCCAGCTCC < 41bp 1 0.482193181140469 1 0.78583037853241 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573549 chr22:24573553 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_35805 0 0 1 0 1 CABIN1 chr22:24573472 3'AG 24573472 Downstream 82bp
chr22 24573553 24573553 1 + C A SKCM 24573550 + 24573530 24573570 41 GACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCCA GACTCAGCCCCTGAGCTCTCCCCAAACAGCTGCCAGCTCCA < 41bp 1 0.155913881926276 1 0.25283545255661 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573550 chr22:24573553 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_35806 0 0 1 0 1 CABIN1 chr22:24573472 3'AG 24573472 Downstream 82bp
chr22 24573553 24573553 1 + C A SKCM 24573551 + 24573531 24573571 41 ACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCCAA ACTCAGCCCCTGAGCTCTCCCCAAACAGCTGCCAGCTCCAA < 41bp 1 0.199451425178584 1 0.225923597812653 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573551 chr22:24573553 nonsynonymous SNV 0.006 0 23 hm5C_associated_SNPs_35807 0 0 1 0 1 CABIN1 chr22:24573472 3'AG 24573472 Downstream 82bp
chr2 160031622 160031622 1 + C T SKCM 160031614 + 160031594 160031634 41 AGCCCCAACTACAGAGCATGCTGAGCCTCCGATCCTGTGTG AGCCCCAACTACAGAGCATGCTGAGCCTTCGATCCTGTGTG < 41bp 1 0.505827476928549 1 0.303691953420639 experiment 0.988345046142902 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160031614 chr2:160031622 synonymous SNV . 0 29 hm5C_associated_SNPs_35808 0 0 0 0 1 TANC1 chr2:160031695 5'GT 160031695 Upstream 74bp
chr1 16056393 16056393 1 + C T SKCM 16056373 + 16056353 16056393 41 AGCATCCTGACGGATGCCACCATGGAGAAGCTGGCACTGGC AGCATCCTGACGGATGCCACCATGGAGAAGCTGGCACTGGT < 41bp 1 0.37731843160711 1 0.428626507520676 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16056373 chr1:16056393 nonsynonymous SNV 0.999 2 41 hm5C_associated_SNPs_35809 0 0 1 0 1 PLEKHM2 chr1:16056424 5'GT 16056424 Upstream 32bp
chr19 10893729 10893729 1 + C T SKCM 10893721 + 10893701 10893741 41 CTGGCAGCTGAGAGGAAGTTCTTCCTCTCCCACCCGGCCTA CTGGCAGCTGAGAGGAAGTTCTTCCTCTTCCACCCGGCCTA < 41bp 1 0.183291024434747 1 0.0450520515441895 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10893721 chr19:10893729 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_35811 0 0 1 0 1 DNM2 chr19:10893796 5'GT 10893796 Upstream 68bp
chr8 145065438 145065438 1 + C T SKCM 145065439 + 145065419 145065459 41 TCTGGGGACAACTATCCTCCCCCCAACCCTGGATATCCGGG TCTGGGGACAACTATCCTCTCCCCAACCCTGGATATCCGGG < 41bp 1 0.45757055760428 1 0.326483428478241 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065439 chr8:145065438 nonsynonymous SNV 0.866 1 20 hm5C_associated_SNPs_35812 0 0 1 0 1 GRINA chr8:145065368 3'AG 145065368 Downstream 71bp
chr11 48152026 48152026 1 + C T SKCM 48152020 + 48152000 48152040 41 TCTTTGCATAGCCCCTGTTCCAGTTTCTGACTTCCGAGTGA TCTTTGCATAGCCCCTGTTCCAGTTTTTGACTTCCGAGTGA < 41bp 1 0.158172166373811 1 0.14460813999176 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48152020 chr11:48152026 nonsynonymous SNV 0.032 2 27 hm5C_associated_SNPs_35813 0 0 0 0 1 PTPRJ chr11:48152011 3'AG 48152011 Downstream 16bp
chr1 163042242 163042242 1 + A G SKCM 163042250 + 163042230 163042270 41 TGATTCCTGTGAACACAATTCTTCCCACAACAAGAAGGACA TGATTCCTGTGAGCACAATTCTTCCCACAACAAGAAGGACA < 41bp 1 0.152546295833624 1 0.060931921005249 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RGS4 ENSG00000117152 CDS Human protein_coding chr1:163042250 chr1:163042242 synonymous SNV . 0 13 hm5C_associated_SNPs_35814 0 0 0 0 2 RGS4 chr1:163042185 3'AG 163042185 Downstream 58bp
chr1 163042242 163042242 1 + A G SKCM 163042250 + 163042230 163042270 41 TGATTCCTGTGAACACAATTCTTCCCACAACAAGAAGGACA TGATTCCTGTGAGCACAATTCTTCCCACAACAAGAAGGACA < 41bp 1 0.152546295833624 1 0.060931921005249 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RGS4 ENSG00000117152 CDS Human protein_coding chr1:163042250 chr1:163042242 synonymous SNV . 0 13 hm5C_associated_SNPs_35814 0 0 0 0 2 RGS4 chr1:163042289 5'GT 163042289 Upstream 48bp
chr1 29618381 29618381 1 + G A SKCM 29618385 + 29618365 29618405 41 CAACCCCCCTCTCCAGGAAGCCGGTGAACATGACCAAGGCC CAACCCCCCTCTCCAGAAAGCCGGTGAACATGACCAAGGCC < 41bp 1 0.184426198021525 1 0.332224011421204 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPRU ENSG00000060656 CDS Human protein_coding chr1:29618385 chr1:29618381 synonymous SNV . 0 17 hm5C_associated_SNPs_35815 0 0 1 0 1 PTPRU chr1:29618381 3'AG 29618381 Downstream 1bp
chr1 53420459 53420459 1 + G A SKCM 53420465 + 53420445 53420485 41 AGAAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT AGAAGATGAGTAAGAGAAGCCTTGGAATAAAAGTGAGTGTT < 41bp 1 0.380366427789526 1 0.106358379125595 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53420465 chr1:53420459 nonsynonymous SNV 0.714 5 15 hm5C_associated_SNPs_35816 0 0 1 1 2 SCP2 chr1:53420412 3'AG 53420412 Downstream 48bp
chr1 53420459 53420459 1 + G A SKCM 53420465 + 53420445 53420485 41 AGAAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT AGAAGATGAGTAAGAGAAGCCTTGGAATAAAAGTGAGTGTT < 41bp 1 0.380366427789526 1 0.106358379125595 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53420465 chr1:53420459 nonsynonymous SNV 0.714 5 15 hm5C_associated_SNPs_35816 0 0 1 1 2 SCP2 chr1:53420476 5'GT 53420476 Upstream 18bp
chr22 41742206 41742206 1 + C T SKCM 41742194 + 41742174 41742214 41 CTGAAGGAGCACCAGGGCATCTTCACCTTCCTCTGCGAGGT CTGAAGGAGCACCAGGGCATCTTCACCTTCCTTTGCGAGGT < 41bp 1 0.346711094264557 1 0.227468639612198 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41742194 chr22:41742206 synonymous SNV . 0 33 hm5C_associated_SNPs_35820 0 0 1 0 1 ZC3H7B chr22:41742212 5'GT 41742212 Upstream 7bp
chr10 126505149 126505149 1 + C T SKCM 126505159 + 126505139 126505179 41 TTACAGAAATCCATAACCATCAGCCTTGTTCAAAACTTTTT TTACAGAAATTCATAACCATCAGCCTTGTTCAAAACTTTTT < 41bp 1 0.278665204554326 1 0.0659747421741486 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126505159 chr10:126505149 synonymous SNV . 0 11 hm5C_associated_SNPs_35821 0 0 0 0 2 ABRAXAS2 chr10:126505145 3'AG 126505145 Downstream 5bp
chr10 126505149 126505149 1 + C T SKCM 126505159 + 126505139 126505179 41 TTACAGAAATCCATAACCATCAGCCTTGTTCAAAACTTTTT TTACAGAAATTCATAACCATCAGCCTTGTTCAAAACTTTTT < 41bp 1 0.278665204554326 1 0.0659747421741486 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126505159 chr10:126505149 synonymous SNV . 0 11 hm5C_associated_SNPs_35821 0 0 0 0 2 ABRAXAS2 chr10:126505181 5'GT 126505181 Upstream 33bp
chr6 11566004 11566004 1 + G A SKCM 11565991 + 11565971 11566011 41 TGTTTGTGATGCTGCAGAGGCATAGGCAGGGAAGAGTCATC TGTTTGTGATGCTGCAGAGGCATAGGCAGGGAAAAGTCATC < 41bp 1 0.333743372063491 1 0.370188176631927 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMEM170B ENSG00000205269 CDS Human protein_coding chr6:11565991 chr6:11566004 nonsynonymous SNV 0.994 3 34 hm5C_associated_SNPs_35822 0 0 1 0 1 TMEM170B chr6:11566069 5'GT 11566069 Upstream 66bp
chr10 104140992 104140992 1 + C T SKCM 104141008 + 104140988 104141028 41 ATTCCATCTGAGCTGGGGGCCTGTGGTGAGTCTCTCTAGCC ATTCTATCTGAGCTGGGGGCCTGTGGTGAGTCTCTCTAGCC < 41bp 1 0.308840490901582 1 0.277062386274338 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104141008 chr10:104140992 nonsynonymous SNV 0.155 4 5 hm5C_associated_SNPs_35823 0 0 1 0 1 GBF1 chr10:104141012 5'GT 104141012 Upstream 21bp
chr17 73489155 73489155 1 + C T SKCM 73489149 + 73489129 73489169 41 CGGCGGCCTCCCCTCAGCCACATGATCAGCCTCTTCATTAA CGGCGGCCTCCCCTCAGCCACATGATTAGCCTCTTCATTAA < 41bp 1 0.56523365732328 1 0.118045926094055 experiment 0.86953268535344 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73489149 chr17:73489155 synonymous SNV . 0 27 hm5C_associated_SNPs_35824 0 0 1 0 1 TMEM94 chr17:73489183 5'GT 73489183 Upstream 29bp
chr19 50334627 50334627 1 + C T SKCM 50334624 + 50334604 50334644 41 CCCAGGAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAG CCCAGGAGGGGTGAGCGGCCCTTTCCCAGCCCAGCTGGGAG < 41bp 1 0.111226734850244 1 0.144455015659332 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334624 chr19:50334627 nonsynonymous SNV 0.546 3 24 hm5C_associated_SNPs_35826 0 0 1 0 2 MED25 chr19:50334590 3'AG 50334590 Downstream 38bp
chr19 50334627 50334627 1 + C T SKCM 50334624 + 50334604 50334644 41 CCCAGGAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAG CCCAGGAGGGGTGAGCGGCCCTTTCCCAGCCCAGCTGGGAG < 41bp 1 0.111226734850244 1 0.144455015659332 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334624 chr19:50334627 nonsynonymous SNV 0.546 3 24 hm5C_associated_SNPs_35826 0 0 1 0 2 MED25 chr19:50334718 5'GT 50334718 Upstream 92bp
chr19 50334627 50334627 1 + C T SKCM 50334629 + 50334609 50334649 41 GAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAGCCCCA GAGGGGTGAGCGGCCCTTTCCCAGCCCAGCTGGGAGCCCCA < 41bp 1 0.446411054964924 1 0.354237854480743 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334629 chr19:50334627 nonsynonymous SNV 0.546 3 19 hm5C_associated_SNPs_35827 0 0 1 0 2 MED25 chr19:50334590 3'AG 50334590 Downstream 38bp
chr19 50334627 50334627 1 + C T SKCM 50334629 + 50334609 50334649 41 GAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAGCCCCA GAGGGGTGAGCGGCCCTTTCCCAGCCCAGCTGGGAGCCCCA < 41bp 1 0.446411054964924 1 0.354237854480743 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334629 chr19:50334627 nonsynonymous SNV 0.546 3 19 hm5C_associated_SNPs_35827 0 0 1 0 2 MED25 chr19:50334718 5'GT 50334718 Upstream 92bp
chr2 3628410 3628410 1 + G A SKCM 3628408 + 3628388 3628428 41 CTTGTAGGTTGAAACTTTTTCTGGTGTCTATAAGAAGCTCA CTTGTAGGTTGAAACTTTTTCTAGTGTCTATAAGAAGCTCA < 41bp 1 0.611770411232202 1 0.450003325939178 experiment 0.776459177535595 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS7 ENSG00000171863 CDS Human protein_coding chr2:3628408 chr2:3628410 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_35828 0 0 1 0 1 RPS7 chr2:3628395 3'AG 3628395 Downstream 16bp
chr19 50334628 50334628 1 + C T SKCM 50334624 + 50334604 50334644 41 CCCAGGAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAG CCCAGGAGGGGTGAGCGGCCCTTCTCCAGCCCAGCTGGGAG < 41bp 1 0.303975215512136 1 0.143127143383026 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334624 chr19:50334628 synonymous SNV . 0 25 hm5C_associated_SNPs_35829 0 0 1 0 2 MED25 chr19:50334590 3'AG 50334590 Downstream 39bp
chr19 50334628 50334628 1 + C T SKCM 50334624 + 50334604 50334644 41 CCCAGGAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAG CCCAGGAGGGGTGAGCGGCCCTTCTCCAGCCCAGCTGGGAG < 41bp 1 0.303975215512136 1 0.143127143383026 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334624 chr19:50334628 synonymous SNV . 0 25 hm5C_associated_SNPs_35829 0 0 1 0 2 MED25 chr19:50334718 5'GT 50334718 Upstream 91bp
chr19 50334628 50334628 1 + C T SKCM 50334629 + 50334609 50334649 41 GAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAGCCCCA GAGGGGTGAGCGGCCCTTCTCCAGCCCAGCTGGGAGCCCCA < 41bp 1 0.534540479953958 1 0.850487768650055 experiment 0.930919040092084 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334629 chr19:50334628 synonymous SNV . 0 20 hm5C_associated_SNPs_35830 0 0 1 0 2 MED25 chr19:50334590 3'AG 50334590 Downstream 39bp
chr19 50334628 50334628 1 + C T SKCM 50334629 + 50334609 50334649 41 GAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAGCCCCA GAGGGGTGAGCGGCCCTTCTCCAGCCCAGCTGGGAGCCCCA < 41bp 1 0.534540479953958 1 0.850487768650055 experiment 0.930919040092084 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334629 chr19:50334628 synonymous SNV . 0 20 hm5C_associated_SNPs_35830 0 0 1 0 2 MED25 chr19:50334718 5'GT 50334718 Upstream 91bp
chr1 150257024 150257024 1 + C T SKCM 150257011 + 150256991 150257031 41 AACGTCATTTTCACAGGGAACGTTACCTAGGAACCTTGCTA AACGTCATTTTCACAGGGAACGTTACCTAGGAATCTTGCTA < 41bp 1 0.119321452227323 1 0.0659755766391754 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CIART ENSG00000159208 CDS Human protein_coding chr1:150257011 chr1:150257024 nonsynonymous SNV 0.972 3 34 hm5C_associated_SNPs_35831 0 0 0 0 2 CIART chr1:150257007 3'AG 150257007 Downstream 18bp
chr1 150257024 150257024 1 + C T SKCM 150257011 + 150256991 150257031 41 AACGTCATTTTCACAGGGAACGTTACCTAGGAACCTTGCTA AACGTCATTTTCACAGGGAACGTTACCTAGGAATCTTGCTA < 41bp 1 0.119321452227323 1 0.0659755766391754 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CIART ENSG00000159208 CDS Human protein_coding chr1:150257011 chr1:150257024 nonsynonymous SNV 0.972 3 34 hm5C_associated_SNPs_35831 0 0 0 0 2 CIART chr1:150257118 5'GT 150257118 Upstream 95bp
chr9 2186140 2186140 1 + C T SKCM 2186154 + 2186134 2186174 41 GAGTGCCCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGAGG GAGTGCTCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGAGG < 41bp 1 0.207268360258316 1 0.0807017982006073 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2186154 chr9:2186140 synonymous SNV . 0 7 hm5C_associated_SNPs_35832 0 0 1 0 1 SMARCA2 chr9:2186096 3'AG 2186096 Downstream 45bp
chr9 2186140 2186140 1 + C T SKCM 2186155 + 2186135 2186175 41 AGTGCCCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGAGGA AGTGCTCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGAGGA < 41bp 1 0.32472089701934 1 0.749306559562683 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2186155 chr9:2186140 synonymous SNV . 0 6 hm5C_associated_SNPs_35833 0 0 1 0 1 SMARCA2 chr9:2186096 3'AG 2186096 Downstream 45bp
chr1 150257025 150257025 1 + C T SKCM 150257011 + 150256991 150257031 41 AACGTCATTTTCACAGGGAACGTTACCTAGGAACCTTGCTA AACGTCATTTTCACAGGGAACGTTACCTAGGAACTTTGCTA < 41bp 1 0.121081990022569 1 0.0596437752246857 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CIART ENSG00000159208 CDS Human protein_coding chr1:150257011 chr1:150257025 synonymous SNV . 0 35 hm5C_associated_SNPs_35834 0 0 0 0 2 CIART chr1:150257007 3'AG 150257007 Downstream 19bp
chr1 150257025 150257025 1 + C T SKCM 150257011 + 150256991 150257031 41 AACGTCATTTTCACAGGGAACGTTACCTAGGAACCTTGCTA AACGTCATTTTCACAGGGAACGTTACCTAGGAACTTTGCTA < 41bp 1 0.121081990022569 1 0.0596437752246857 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CIART ENSG00000159208 CDS Human protein_coding chr1:150257011 chr1:150257025 synonymous SNV . 0 35 hm5C_associated_SNPs_35834 0 0 0 0 2 CIART chr1:150257118 5'GT 150257118 Upstream 94bp
chr17 37358611 37358611 1 + C T SKCM 37358628 + 37358608 37358648 41 ATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCG ATCTGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCG < 41bp 1 0.111213877073784 1 0.0311409831047058 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358628 chr17:37358611 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_35835 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 42bp
chr17 37358611 37358611 1 + C T SKCM 37358628 + 37358608 37358648 41 ATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCG ATCTGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCG < 41bp 1 0.111213877073784 1 0.0311409831047058 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358628 chr17:37358611 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_35835 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 82bp
chr5 156816271 156816271 1 + C T SKCM 156816259 + 156816239 156816279 41 CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTGAC CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTTATCCTGAC < 41bp 1 0.30486518023196 1 0.412791758775711 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816259 chr5:156816271 synonymous SNV . 0 33 hm5C_associated_SNPs_35837 0 0 1 0 1 CYFIP2 chr5:156816197 3'AG 156816197 Downstream 75bp
chr9 139734209 139734209 1 + C T SKCM 139734201 + 139734181 139734221 41 GACTGACGAGGATGAGGGCCCTGCCGAGCCGCCCCCACCCC GACTGACGAGGATGAGGGCCCTGCCGAGTCGCCCCCACCCC < 41bp 1 0.465703750497108 1 0.227111279964447 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734201 chr9:139734209 nonsynonymous SNV 0.006 1 29 hm5C_associated_SNPs_35838 0 0 1 0 1 RABL6 chr9:139734146 3'AG 139734146 Downstream 64bp
chr17 48155447 48155447 1 + C T SKCM 48155439 + 48155419 48155459 41 CTCATCGCCTTTGAGGTCATCGGGGTGACCCTGCACACAAG CTCATCGCCTTTGAGGTCATCGGGGTGATCCTGCACACAAG < 41bp 1 0.7802854070751 1 0.960967719554901 experiment 0.4394291858498 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48155439 chr17:48155447 nonsynonymous SNV 0.989 3 29 hm5C_associated_SNPs_35839 0 0 0 0 2 ITGA3 chr17:48155410 3'AG 48155410 Downstream 38bp
chr17 48155447 48155447 1 + C T SKCM 48155439 + 48155419 48155459 41 CTCATCGCCTTTGAGGTCATCGGGGTGACCCTGCACACAAG CTCATCGCCTTTGAGGTCATCGGGGTGATCCTGCACACAAG < 41bp 1 0.7802854070751 1 0.960967719554901 experiment 0.4394291858498 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48155439 chr17:48155447 nonsynonymous SNV 0.989 3 29 hm5C_associated_SNPs_35839 0 0 0 0 2 ITGA3 chr17:48155489 5'GT 48155489 Upstream 43bp
chr18 9954086 9954086 1 + G A SKCM 9954099 + 9954079 9954119 41 ACATTCGGATAAACCTGGATCAACCTCAACTGCATCCTTCA ACATTCGAATAAACCTGGATCAACCTCAACTGCATCCTTCA < 41bp 1 0.235967652387614 1 0.186499148607254 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VAPA ENSG00000101558 CDS Human protein_coding chr18:9954099 chr18:9954086 nonsynonymous SNV 1.000 0 8 hm5C_associated_SNPs_35840 0 0 1 0 1 VAPA chr18:9954050 3'AG 9954050 Downstream 37bp
chr7 130021485 130021485 1 + G A SKCM 130021476 + 130021456 130021496 41 TCTTGTCCTCCCCAGCTGGACTTCTGGCGGGGGCCTGCCCA TCTTGTCCTCCCCAGCTGGACTTCTGGCGAGGGCCTGCCCA < 41bp 1 0.424456830322056 1 0.0418526232242584 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021476 chr7:130021485 synonymous SNV . 0 30 hm5C_associated_SNPs_35841 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 15bp
chr7 130021485 130021485 1 + G A SKCM 130021476 + 130021456 130021496 41 TCTTGTCCTCCCCAGCTGGACTTCTGGCGGGGGCCTGCCCA TCTTGTCCTCCCCAGCTGGACTTCTGGCGAGGGCCTGCCCA < 41bp 1 0.424456830322056 1 0.0418526232242584 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021476 chr7:130021485 synonymous SNV . 0 30 hm5C_associated_SNPs_35841 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 37bp
chr7 130021485 130021485 1 + G A SKCM 130021489 + 130021469 130021509 41 AGCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCC AGCTGGACTTCTGGCGAGGGCCTGCCCACCCTGGCTCCCCC < 41bp 1 0.150498188864513 1 0.227798253297806 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021489 chr7:130021485 synonymous SNV . 0 17 hm5C_associated_SNPs_35842 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 15bp
chr7 130021485 130021485 1 + G A SKCM 130021489 + 130021469 130021509 41 AGCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCC AGCTGGACTTCTGGCGAGGGCCTGCCCACCCTGGCTCCCCC < 41bp 1 0.150498188864513 1 0.227798253297806 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021489 chr7:130021485 synonymous SNV . 0 17 hm5C_associated_SNPs_35842 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 37bp
chr7 130021485 130021485 1 + G A SKCM 130021490 + 130021470 130021510 41 GCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCA GCTGGACTTCTGGCGAGGGCCTGCCCACCCTGGCTCCCCCA < 41bp 1 0.521995394340741 1 0.376601338386536 experiment 0.956009211318519 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021490 chr7:130021485 synonymous SNV . 0 16 hm5C_associated_SNPs_35843 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 15bp
chr7 130021485 130021485 1 + G A SKCM 130021490 + 130021470 130021510 41 GCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCA GCTGGACTTCTGGCGAGGGCCTGCCCACCCTGGCTCCCCCA < 41bp 1 0.521995394340741 1 0.376601338386536 experiment 0.956009211318519 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021490 chr7:130021485 synonymous SNV . 0 16 hm5C_associated_SNPs_35843 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 37bp
chr7 130021485 130021485 1 + G A SKCM 130021493 + 130021473 130021513 41 GGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCG GGACTTCTGGCGAGGGCCTGCCCACCCTGGCTCCCCCATCG < 41bp 1 0.247697230221307 1 0.259491264820099 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021493 chr7:130021485 synonymous SNV . 0 13 hm5C_associated_SNPs_35844 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 15bp
chr7 130021485 130021485 1 + G A SKCM 130021493 + 130021473 130021513 41 GGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCG GGACTTCTGGCGAGGGCCTGCCCACCCTGGCTCCCCCATCG < 41bp 1 0.247697230221307 1 0.259491264820099 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021493 chr7:130021485 synonymous SNV . 0 13 hm5C_associated_SNPs_35844 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 37bp
chr7 130021485 130021485 1 + G A SKCM 130021494 + 130021474 130021514 41 GACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGA GACTTCTGGCGAGGGCCTGCCCACCCTGGCTCCCCCATCGA < 41bp 1 0.270978722619186 1 0.133574515581131 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021494 chr7:130021485 synonymous SNV . 0 12 hm5C_associated_SNPs_35845 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 15bp
chr7 130021485 130021485 1 + G A SKCM 130021494 + 130021474 130021514 41 GACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGA GACTTCTGGCGAGGGCCTGCCCACCCTGGCTCCCCCATCGA < 41bp 1 0.270978722619186 1 0.133574515581131 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021494 chr7:130021485 synonymous SNV . 0 12 hm5C_associated_SNPs_35845 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 37bp
chr7 130021485 130021485 1 + G A SKCM 130021495 + 130021475 130021515 41 ACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGAC ACTTCTGGCGAGGGCCTGCCCACCCTGGCTCCCCCATCGAC < 41bp 1 0.748821303605215 1 0.183631002902985 experiment 0.502357392789569 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021495 chr7:130021485 synonymous SNV . 0 11 hm5C_associated_SNPs_35846 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 15bp
chr7 130021485 130021485 1 + G A SKCM 130021495 + 130021475 130021515 41 ACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGAC ACTTCTGGCGAGGGCCTGCCCACCCTGGCTCCCCCATCGAC < 41bp 1 0.748821303605215 1 0.183631002902985 experiment 0.502357392789569 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021495 chr7:130021485 synonymous SNV . 0 11 hm5C_associated_SNPs_35846 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 37bp
chr7 130021485 130021485 1 + G A SKCM 130021497 + 130021477 130021517 41 TTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGT TTCTGGCGAGGGCCTGCCCACCCTGGCTCCCCCATCGACGT < 41bp 1 0.461341938380098 1 0.0474551618099213 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021497 chr7:130021485 synonymous SNV . 0 9 hm5C_associated_SNPs_35847 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 15bp
chr7 130021485 130021485 1 + G A SKCM 130021497 + 130021477 130021517 41 TTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGT TTCTGGCGAGGGCCTGCCCACCCTGGCTCCCCCATCGACGT < 41bp 1 0.461341938380098 1 0.0474551618099213 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021497 chr7:130021485 synonymous SNV . 0 9 hm5C_associated_SNPs_35847 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 37bp
chr7 130021485 130021485 1 + G A SKCM 130021498 + 130021478 130021518 41 TCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC TCTGGCGAGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC < 41bp 1 0.605257315495605 1 0.13768270611763 experiment 0.789485369008789 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021498 chr7:130021485 synonymous SNV . 0 8 hm5C_associated_SNPs_35848 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 15bp
chr7 130021485 130021485 1 + G A SKCM 130021498 + 130021478 130021518 41 TCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC TCTGGCGAGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC < 41bp 1 0.605257315495605 1 0.13768270611763 experiment 0.789485369008789 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021498 chr7:130021485 synonymous SNV . 0 8 hm5C_associated_SNPs_35848 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 37bp
chr7 130021485 130021485 1 + G A SKCM 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT CGAGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT < 41bp 1 0.205481854907981 1 0.0946122705936432 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021485 synonymous SNV . 0 3 hm5C_associated_SNPs_35849 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 15bp
chr7 130021485 130021485 1 + G A SKCM 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT CGAGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT < 41bp 1 0.205481854907981 1 0.0946122705936432 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021485 synonymous SNV . 0 3 hm5C_associated_SNPs_35849 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 37bp
chr7 130021485 130021485 1 + G A SKCM 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC AGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC < 41bp 1 0.199694007388684 1 0.039365291595459 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021485 synonymous SNV . 0 1 hm5C_associated_SNPs_35850 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 15bp
chr7 130021485 130021485 1 + G A SKCM 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC AGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC < 41bp 1 0.199694007388684 1 0.039365291595459 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021485 synonymous SNV . 0 1 hm5C_associated_SNPs_35850 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 37bp
chr12 107237692 107237692 1 + C T SKCM 107237701 + 107237681 107237721 41 TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTCAAAGA TGTTCCCGAGCTCATCGAAACATCCGAAAATTTCTCAAAGA < 41bp 1 0.133436170649748 1 0.263935595750809 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107237701 chr12:107237692 synonymous SNV . 0 12 hm5C_associated_SNPs_35851 0 0 0 0 2 RIC8B chr12:107237630 3'AG 107237630 Downstream 63bp
chr12 107237692 107237692 1 + C T SKCM 107237701 + 107237681 107237721 41 TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTCAAAGA TGTTCCCGAGCTCATCGAAACATCCGAAAATTTCTCAAAGA < 41bp 1 0.133436170649748 1 0.263935595750809 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107237701 chr12:107237692 synonymous SNV . 0 12 hm5C_associated_SNPs_35851 0 0 0 0 2 RIC8B chr12:107237725 5'GT 107237725 Upstream 34bp
chr19 50158053 50158053 1 + C T SKCM 50158043 + 50158023 50158063 41 CTGGGGGGCTGCGGTTCGACCCCCCCCACCCCCACCGGGCT CTGGGGGGCTGCGGTTCGACCCCCCCCACCTCCACCGGGCT < 41bp 1 0.101486431350166 1 0.100111544132233 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50158043 chr19:50158053 nonsynonymous SNV 0.993 2 31 hm5C_associated_SNPs_35852 0 0 1 0 1 SCAF1 chr19:50158127 5'GT 50158127 Upstream 75bp
chr11 68115619 68115619 1 + C T SKCM 68115603 + 68115583 68115623 41 GAAGCTGTACTGGACGGACTCAGAGACCAACCGCATCGAGG GAAGCTGTACTGGACGGACTCAGAGACCAACCGCATTGAGG < 41bp 1 0.595219520925491 1 0.867277801036835 experiment 0.809560958149018 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68115603 chr11:68115619 synonymous SNV . 0 37 hm5C_associated_SNPs_35853 0 0 0 0 1 LRP5 chr11:68115711 5'GT 68115711 Upstream 93bp
chr19 10940874 10940874 1 + C T SKCM 10940869 + 10940849 10940889 41 CGGCCCCCAGCAGTGAGGGGCCCCACTCCAGGGCCCCCCCT CGGCCCCCAGCAGTGAGGGGCCCCATTCCAGGGCCCCCCCT < 41bp 1 0.284534160940878 1 0.0698205530643463 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940869 chr19:10940874 nonsynonymous SNV 0.287 3 26 hm5C_associated_SNPs_35854 0 0 0 0 1 DNM2 chr19:10940803 3'AG 10940803 Downstream 72bp
chr19 10940874 10940874 1 + C T SKCM 10940870 + 10940850 10940890 41 GGCCCCCAGCAGTGAGGGGCCCCACTCCAGGGCCCCCCCTG GGCCCCCAGCAGTGAGGGGCCCCATTCCAGGGCCCCCCCTG < 41bp 1 0.233402065078063 1 0.0533895492553711 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940870 chr19:10940874 nonsynonymous SNV 0.287 3 25 hm5C_associated_SNPs_35855 0 0 0 0 1 DNM2 chr19:10940803 3'AG 10940803 Downstream 72bp
chr19 10940874 10940874 1 + C T SKCM 10940871 + 10940851 10940891 41 GCCCCCAGCAGTGAGGGGCCCCACTCCAGGGCCCCCCCTGA GCCCCCAGCAGTGAGGGGCCCCATTCCAGGGCCCCCCCTGA < 41bp 1 0.0632742172182039 1 0.0719099044799805 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940871 chr19:10940874 nonsynonymous SNV 0.287 3 24 hm5C_associated_SNPs_35856 0 0 0 0 1 DNM2 chr19:10940803 3'AG 10940803 Downstream 72bp
chr19 10940873 10940873 1 + A T SKCM 10940869 + 10940849 10940889 41 CGGCCCCCAGCAGTGAGGGGCCCCACTCCAGGGCCCCCCCT CGGCCCCCAGCAGTGAGGGGCCCCTCTCCAGGGCCCCCCCT < 41bp 1 0.0796599728887253 1 0.0281355381011963 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940869 chr19:10940873 nonsynonymous SNV 0.218 2 25 hm5C_associated_SNPs_35863 0 0 0 0 1 DNM2 chr19:10940803 3'AG 10940803 Downstream 71bp
chr19 10940873 10940873 1 + A T SKCM 10940870 + 10940850 10940890 41 GGCCCCCAGCAGTGAGGGGCCCCACTCCAGGGCCCCCCCTG GGCCCCCAGCAGTGAGGGGCCCCTCTCCAGGGCCCCCCCTG < 41bp 1 0.107407059259253 1 0.0447445511817932 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940870 chr19:10940873 nonsynonymous SNV 0.218 2 24 hm5C_associated_SNPs_35864 0 0 0 0 1 DNM2 chr19:10940803 3'AG 10940803 Downstream 71bp
chr19 10940873 10940873 1 + A T SKCM 10940871 + 10940851 10940891 41 GCCCCCAGCAGTGAGGGGCCCCACTCCAGGGCCCCCCCTGA GCCCCCAGCAGTGAGGGGCCCCTCTCCAGGGCCCCCCCTGA < 41bp 1 0.0651653552060293 1 0.0935187041759491 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940871 chr19:10940873 nonsynonymous SNV 0.218 2 23 hm5C_associated_SNPs_35865 0 0 0 0 1 DNM2 chr19:10940803 3'AG 10940803 Downstream 71bp
chr1 65684562 65684562 1 + C T SKCM 65684546 + 65684526 65684566 41 CTTAAAGATCGTCTCAGCCGCCGTTGGATTCACCCTCCTAG CTTAAAGATCGTCTCAGCCGCCGTTGGATTCACCCTTCTAG < 41bp 1 0.0828130932100926 1 0.182105660438538 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AK4 ENSG00000162433 CDS Human protein_coding chr1:65684546 chr1:65684562 nonsynonymous SNV 0.933 0 37 hm5C_associated_SNPs_35866 0 0 0 0 1 AK4 chr1:65684609 5'GT 65684609 Upstream 48bp
chr12 6644008 6644008 1 + G A SKCM 6643991 + 6643971 6644011 41 CGCAGCCGAGCCACATCGCTCAGACACCATGGGGAAGGTGA CGCAGCCGAGCCACATCGCTCAGACACCATGGGGAAGATGA < 41bp 1 0.224732193875575 1 0.250742375850677 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6643991 chr12:6644008 nonsynonymous SNV 0.591 1 38 hm5C_associated_SNPs_35867 0 0 1 0 2 GAPDH chr12:6643976 3'AG 6643976 Downstream 33bp
chr12 6644008 6644008 1 + G A SKCM 6643991 + 6643971 6644011 41 CGCAGCCGAGCCACATCGCTCAGACACCATGGGGAAGGTGA CGCAGCCGAGCCACATCGCTCAGACACCATGGGGAAGATGA < 41bp 1 0.224732193875575 1 0.250742375850677 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6643991 chr12:6644008 nonsynonymous SNV 0.591 1 38 hm5C_associated_SNPs_35867 0 0 1 0 2 GAPDH chr12:6644027 5'GT 6644027 Upstream 20bp
chr1 237052585 237052585 1 + G A SKCM 237052594 + 237052574 237052614 41 GGCAGCTCCGGGGCAAGTACCCGAATCGAGGCTTTCCCAAG GGCAGCTCCGGAGCAAGTACCCGAATCGAGGCTTTCCCAAG < 41bp 1 0.452386452071517 1 0.809024155139923 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTR ENSG00000116984 CDS Human protein_coding chr1:237052594 chr1:237052585 nonsynonymous SNV 1.000 5 12 hm5C_associated_SNPs_35868 0 0 1 0 1 MTR chr1:237052636 5'GT 237052636 Upstream 52bp
chr12 6644007 6644007 1 + G A SKCM 6643991 + 6643971 6644011 41 CGCAGCCGAGCCACATCGCTCAGACACCATGGGGAAGGTGA CGCAGCCGAGCCACATCGCTCAGACACCATGGGGAAAGTGA < 41bp 1 0.208783132982108 1 0.209500402212143 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6643991 chr12:6644007 synonymous SNV . 0 37 hm5C_associated_SNPs_35869 0 0 1 0 2 GAPDH chr12:6643976 3'AG 6643976 Downstream 32bp
chr12 6644007 6644007 1 + G A SKCM 6643991 + 6643971 6644011 41 CGCAGCCGAGCCACATCGCTCAGACACCATGGGGAAGGTGA CGCAGCCGAGCCACATCGCTCAGACACCATGGGGAAAGTGA < 41bp 1 0.208783132982108 1 0.209500402212143 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6643991 chr12:6644007 synonymous SNV . 0 37 hm5C_associated_SNPs_35869 0 0 1 0 2 GAPDH chr12:6644027 5'GT 6644027 Upstream 21bp
chr1 237052584 237052584 1 + G A SKCM 237052594 + 237052574 237052614 41 GGCAGCTCCGGGGCAAGTACCCGAATCGAGGCTTTCCCAAG GGCAGCTCCGAGGCAAGTACCCGAATCGAGGCTTTCCCAAG < 41bp 1 0.493065297729144 1 0.684414386749268 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTR ENSG00000116984 CDS Human protein_coding chr1:237052594 chr1:237052584 synonymous SNV . 0 11 hm5C_associated_SNPs_35873 0 0 1 0 1 MTR chr1:237052636 5'GT 237052636 Upstream 53bp
chr11 14666552 14666552 1 + T C SKCM 14666571 + 14666551 14666591 41 TTGCAAAATATTCAGGAGACCGTCGTTGCCTTGTATTTCCA TCGCAAAATATTCAGGAGACCGTCGTTGCCTTGTATTTCCA < 41bp 1 0.211644216047044 1 0.110804796218872 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE3B ENSG00000152270 CDS Human protein_coding chr11:14666571 chr11:14666552 nonsynonymous SNV 0.722 0 2 hm5C_associated_SNPs_35874 0 0 0 0 1 PDE3B chr11:14666599 5'GT 14666599 Upstream 48bp
chr19 36572471 36572471 1 + A G SKCM 36572466 + 36572446 36572486 41 CACTGGCAGAAAAACATCTTCAGCAATGTGAGTGGCTTCCT CACTGGCAGAAAAACATCTTCAGCAGTGTGAGTGGCTTCCT < 41bp 1 0.597472992747058 1 0.333958983421326 experiment 0.805054014505883 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36572466 chr19:36572471 nonsynonymous SNV 0.998 0 26 hm5C_associated_SNPs_35881 0 0 1 0 1 WDR62 chr19:36572472 5'GT 36572472 Upstream 2bp
chr1 24996708 24996708 1 + C T SKCM 24996688 + 24996668 24996708 41 CGGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTC CGGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTT < 41bp 1 0.596998037294697 1 0.558761775493622 experiment 0.806003925410605 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996688 chr1:24996708 nonsynonymous SNV 0.879 1 41 hm5C_associated_SNPs_35882 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 98bp
chr1 24996708 24996708 1 + C T SKCM 24996696 + 24996676 24996716 41 CTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCC CTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTTCATCCCCC < 41bp 1 0.374070831771195 1 0.123581379652023 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996696 chr1:24996708 nonsynonymous SNV 0.879 1 33 hm5C_associated_SNPs_35883 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 98bp
chr1 24996708 24996708 1 + C T SKCM 24996697 + 24996677 24996717 41 TGAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCCG TGAGCCAGCAGCTAAAAAGCCCCCAGCACCTTCATCCCCCG < 41bp 1 0.702010800107113 1 0.215652406215668 experiment 0.595978399785773 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996697 chr1:24996708 nonsynonymous SNV 0.879 1 32 hm5C_associated_SNPs_35884 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 98bp
chr1 24996708 24996708 1 + C T SKCM 24996698 + 24996678 24996718 41 GAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGT GAGCCAGCAGCTAAAAAGCCCCCAGCACCTTCATCCCCCGT < 41bp 1 0.178289647476384 1 0.0867903232574463 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996698 chr1:24996708 nonsynonymous SNV 0.879 1 31 hm5C_associated_SNPs_35885 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 98bp
chr1 24996708 24996708 1 + C T SKCM 24996703 + 24996683 24996723 41 AGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGT AGCAGCTAAAAAGCCCCCAGCACCTTCATCCCCCGTCCAGT < 41bp 1 0.322160037678875 1 0.0943574905395508 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996703 chr1:24996708 nonsynonymous SNV 0.879 1 26 hm5C_associated_SNPs_35886 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 98bp
chr1 24996708 24996708 1 + C T SKCM 24996705 + 24996685 24996725 41 CAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGTCT CAGCTAAAAAGCCCCCAGCACCTTCATCCCCCGTCCAGTCT < 41bp 1 0.0213024389381381 1 0.0170466303825378 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996705 chr1:24996708 nonsynonymous SNV 0.879 1 24 hm5C_associated_SNPs_35887 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 98bp
chr1 24996708 24996708 1 + C T SKCM 24996706 + 24996686 24996726 41 AGCTAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGTCTC AGCTAAAAAGCCCCCAGCACCTTCATCCCCCGTCCAGTCTC < 41bp 1 0.700327496639937 1 0.242478460073471 experiment 0.599345006720125 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996706 chr1:24996708 nonsynonymous SNV 0.879 1 23 hm5C_associated_SNPs_35888 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 98bp
chr1 24996708 24996708 1 + C T SKCM 24996709 + 24996689 24996729 41 TAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGTCTCAGT TAAAAAGCCCCCAGCACCTTCATCCCCCGTCCAGTCTCAGT < 41bp 1 0.0782109801478335 1 0.0286351144313812 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996709 chr1:24996708 nonsynonymous SNV 0.879 1 20 hm5C_associated_SNPs_35889 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 98bp
chr16 28842289 28842289 1 + C T SKCM 28842286 + 28842266 28842306 41 AAAAAAAAACCAAACAGGCCCTTCCCGCATGTCCCCAAAGG AAAAAAAAACCAAACAGGCCCTTTCCGCATGTCCCCAAAGG < 41bp 1 0.0112919769222772 1 0.101621359586716 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28842286 chr16:28842289 nonsynonymous SNV 0.977 4 24 hm5C_associated_SNPs_35895 0 0 1 0 1 ATXN2L chr16:28842283 3'AG 28842283 Downstream 7bp
chr19 39870640 39870640 1 + C T SKCM 39870630 + 39870610 39870650 41 TCACGGAGACGCAGAAGAAACGGCTGCTATCCTGGAAACAG TCACGGAGACGCAGAAGAAACGGCTGCTATTCTGGAAACAG < 41bp 1 0.595466132117231 1 0.412361443042755 experiment 0.809067735765538 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39870630 chr19:39870640 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_35896 0 0 1 0 1 SAMD4B chr19:39870606 3'AG 39870606 Downstream 35bp
chr7 133164816 133164816 1 + C T SKCM 133164812 + 133164792 133164832 41 GTTTCTCTGCAGGTTCGAATCGTCCTCCCATGCCATCAGTA GTTTCTCTGCAGGTTCGAATCGTCTTCCCATGCCATCAGTA < 41bp 1 0.312694460648564 1 0.140977591276169 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133164812 chr7:133164816 synonymous SNV . 0 25 hm5C_associated_SNPs_35898 0 0 1 0 2 EXOC4 chr7:133164804 3'AG 133164804 Downstream 13bp
chr7 133164816 133164816 1 + C T SKCM 133164812 + 133164792 133164832 41 GTTTCTCTGCAGGTTCGAATCGTCCTCCCATGCCATCAGTA GTTTCTCTGCAGGTTCGAATCGTCTTCCCATGCCATCAGTA < 41bp 1 0.312694460648564 1 0.140977591276169 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133164812 chr7:133164816 synonymous SNV . 0 25 hm5C_associated_SNPs_35898 0 0 1 0 2 EXOC4 chr7:133164892 5'GT 133164892 Upstream 77bp
chrX 23802000 23802000 1 + G A SKCM 23802013 + 23801993 23802033 41 TCCGGAAGGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGA TCCGGAAAGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGA < 41bp 1 0.0260843815599808 1 0.0910309255123138 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAT1 ENSG00000130066 CDS Human protein_coding chrX:23802013 chrX:23802000 nonsynonymous SNV 0.984 3 8 hm5C_associated_SNPs_35901 0 0 1 0 2 SAT1 chrX:23801917 3'AG 23801917 Downstream 84bp
chrX 23802000 23802000 1 + G A SKCM 23802013 + 23801993 23802033 41 TCCGGAAGGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGA TCCGGAAAGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGA < 41bp 1 0.0260843815599808 1 0.0910309255123138 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAT1 ENSG00000130066 CDS Human protein_coding chrX:23802013 chrX:23802000 nonsynonymous SNV 0.984 3 8 hm5C_associated_SNPs_35901 0 0 1 0 2 SAT1 chrX:23802000 5'GT 23802000 Upstream 1bp
chrX 23802000 23802000 1 + G A SKCM 23802014 + 23801994 23802034 41 CCGGAAGGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGAC CCGGAAAGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGAC < 41bp 1 0.0468044789746758 1 0.0809257626533508 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAT1 ENSG00000130066 CDS Human protein_coding chrX:23802014 chrX:23802000 nonsynonymous SNV 0.984 3 7 hm5C_associated_SNPs_35902 0 0 1 0 2 SAT1 chrX:23801917 3'AG 23801917 Downstream 84bp
chrX 23802000 23802000 1 + G A SKCM 23802014 + 23801994 23802034 41 CCGGAAGGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGAC CCGGAAAGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGAC < 41bp 1 0.0468044789746758 1 0.0809257626533508 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAT1 ENSG00000130066 CDS Human protein_coding chrX:23802014 chrX:23802000 nonsynonymous SNV 0.984 3 7 hm5C_associated_SNPs_35902 0 0 1 0 2 SAT1 chrX:23802000 5'GT 23802000 Upstream 1bp
chrX 23802001 23802001 1 + G A SKCM 23802013 + 23801993 23802033 41 TCCGGAAGGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGA TCCGGAAGATAACCCCTCGCCCTTTCCAGAAGCCAGAGAGA < 41bp 1 0.0229686250381163 1 0.0972665548324585 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAT1 ENSG00000130066;ENSG00000130066 exonic;splicing Human protein_coding chrX:23802013 chrX:23802001 nonsynonymous SNV 0.985 4 9 hm5C_associated_SNPs_35903 0 0 1 0 1 SAT1 chrX:23801917 3'AG 23801917 Downstream 85bp
chrX 23802001 23802001 1 + G A SKCM 23802014 + 23801994 23802034 41 CCGGAAGGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGAC CCGGAAGATAACCCCTCGCCCTTTCCAGAAGCCAGAGAGAC < 41bp 1 0.0365012874671654 1 0.0567684769630432 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAT1 ENSG00000130066;ENSG00000130066 exonic;splicing Human protein_coding chrX:23802014 chrX:23802001 nonsynonymous SNV 0.985 4 8 hm5C_associated_SNPs_35904 0 0 1 0 1 SAT1 chrX:23801917 3'AG 23801917 Downstream 85bp
chr22 41735126 41735126 1 + C T SKCM 41735129 + 41735109 41735149 41 AGGACCCTCCCCAGCACCGACAGCCTGGATGACTTCTCAGA AGGACCCTCCCCAGCACTGACAGCCTGGATGACTTCTCAGA < 41bp 1 0.31473832999766 1 0.0977351069450378 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41735129 chr22:41735126 synonymous SNV . 0 18 hm5C_associated_SNPs_35905 0 0 1 0 1 ZC3H7B chr22:41735195 5'GT 41735195 Upstream 70bp
chr3 142422804 142422804 1 + C T SKCM 142422814 + 142422794 142422834 41 GAAGGGAATTCAACACTTACCCTGGCATTGGTATGGCAGCT GAAGGGAATTTAACACTTACCCTGGCATTGGTATGGCAGCT < 41bp 1 0.33394922806818 1 0.141684800386429 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLS1 ENSG00000120756 CDS Human protein_coding chr3:142422814 chr3:142422804 nonsynonymous SNV 0.971 1 11 hm5C_associated_SNPs_35906 0 0 1 0 2 PLS1 chr3:142422710 3'AG 142422710 Downstream 95bp
chr3 142422804 142422804 1 + C T SKCM 142422814 + 142422794 142422834 41 GAAGGGAATTCAACACTTACCCTGGCATTGGTATGGCAGCT GAAGGGAATTTAACACTTACCCTGGCATTGGTATGGCAGCT < 41bp 1 0.33394922806818 1 0.141684800386429 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLS1 ENSG00000120756 CDS Human protein_coding chr3:142422814 chr3:142422804 nonsynonymous SNV 0.971 1 11 hm5C_associated_SNPs_35906 0 0 1 0 2 PLS1 chr3:142422843 5'GT 142422843 Upstream 40bp
chr11 62502871 62502871 1 + G T SKCM 62502861 + 62502841 62502881 41 TTTGGCCCATTAGCTTGTCTCCTTCAGATGGAGCCCGTGAA TTTGGCCCATTAGCTTGTCTCCTTCAGATGTAGCCCGTGAA < 41bp 1 0.0291277899407806 1 0.0454441905021667 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TTC9C ENSG00000162222 CDS Human protein_coding chr11:62502861 chr11:62502871 stopgain 1.000 0 31 hm5C_associated_SNPs_35907 0 0 1 0 1 TTC9C chr11:62502854 3'AG 62502854 Downstream 18bp
chr1 200826468 200826468 1 + C T SKCM 200826461 + 200826441 200826481 41 GCTCTACAAAGAACCCAGTGCAAAATCCAATAAGCACATAA GCTCTACAAAGAACCCAGTGCAAAATCTAATAAGCACATAA < 41bp 1 0.274297363293234 1 0.44388735294342 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200826461 chr1:200826468 synonymous SNV . 0 28 hm5C_associated_SNPs_35908 0 0 0 0 2 CAMSAP2 chr1:200826434 3'AG 200826434 Downstream 35bp
chr1 200826468 200826468 1 + C T SKCM 200826461 + 200826441 200826481 41 GCTCTACAAAGAACCCAGTGCAAAATCCAATAAGCACATAA GCTCTACAAAGAACCCAGTGCAAAATCTAATAAGCACATAA < 41bp 1 0.274297363293234 1 0.44388735294342 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200826461 chr1:200826468 synonymous SNV . 0 28 hm5C_associated_SNPs_35908 0 0 0 0 2 CAMSAP2 chr1:200826552 5'GT 200826552 Upstream 85bp
chr19 10561305 10561305 1 + C T SKCM 10561299 + 10561279 10561319 41 GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA GCGGTCCCCGCTGGGCGGCCCCACCCTTGTCTGCAAGGCCA < 41bp 1 0.0505112207211987 1 0.0709052085876465 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561299 chr19:10561305 nonsynonymous SNV 0.899 1 27 hm5C_associated_SNPs_35909 0 0 0 0 2 PDE4A chr19:10561279 3'AG 10561279 Downstream 27bp
chr19 10561305 10561305 1 + C T SKCM 10561299 + 10561279 10561319 41 GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA GCGGTCCCCGCTGGGCGGCCCCACCCTTGTCTGCAAGGCCA < 41bp 1 0.0505112207211987 1 0.0709052085876465 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561299 chr19:10561305 nonsynonymous SNV 0.899 1 27 hm5C_associated_SNPs_35909 0 0 0 0 2 PDE4A chr19:10561328 5'GT 10561328 Upstream 24bp
chr12 112229121 112229121 1 + C T SKCM 112229119 + 112229099 112229139 41 TTTGCTCACAGGCTGGCTTTCCCCCTGGTGTGGTCAACATT TTTGCTCACAGGCTGGCTTTCCTCCTGGTGTGGTCAACATT < 41bp 1 0.0657486936482876 1 0.0345618426799774 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229119 chr12:112229121 synonymous SNV . 0 23 hm5C_associated_SNPs_35912 0 0 1 0 1 ALDH2 chr12:112229110 3'AG 112229110 Downstream 12bp
chr15 44673158 44673158 1 + C T SKCM 44673143 + 44673123 44673163 41 CTAAAGCAGGCTACCAAGGACAGAGTCAGTGATTTCCATAA CTAAAGCAGGCTACCAAGGACAGAGTCAGTGATTTTCATAA < 41bp 1 0.455119288579309 1 0.382098495960236 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CASC4 ENSG00000166734 CDS Human protein_coding chr15:44673143 chr15:44673158 synonymous SNV . 0 36 hm5C_associated_SNPs_35913 0 0 1 0 1 CASC4 chr15:44673174 5'GT 44673174 Upstream 17bp
chr6 31637197 31637197 1 + G T SKCM 31637187 + 31637167 31637207 41 AAGTCATCAAGACACCATCACACGGATGGCGCCTACTTCGG AAGTCATCAAGACACCATCACACGGATGGCTCCTACTTCGG < 41bp 1 0.746588527129206 1 0.0603230595588684 experiment 0.506822945741587 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CSNK2B ENSG00000204435;ENSG00000263020 CDS Human other chr6:31637187 chr6:31637197 nonsynonymous SNV 0.999 1 31 hm5C_associated_SNPs_35917 0 0 1 0 1 CSNK2B chr6:31637285 5'GT 31637285 Upstream 89bp
chr20 330383 330383 1 + C T SKCM 330392 + 330372 330412 41 CTGCACCTCTTCTATGAGGACTGTGCAGGCACTGCTCTCAG CTGCACCTCTTTTATGAGGACTGTGCAGGCACTGCTCTCAG < 41bp 1 0.323045336471419 1 0.0420265793800354 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NRSN2 ENSG00000125841 CDS Human protein_coding chr20:330392 chr20:330383 synonymous SNV . 0 12 hm5C_associated_SNPs_35918 0 0 1 0 1 NRSN2 chr20:330476 5'GT 330476 Upstream 94bp
chr22 38870562 38870562 1 + C T SKCM 38870544 + 38870524 38870564 41 ACAGGCATCTCTGGGAAGAGCCAGATCCTGTTTGCTCTCGT ACAGGCATCTCTGGGAAGAGCCAGATCCTGTTTGCTCTTGT < 41bp 1 0.740898682196074 1 0.224398165941238 experiment 0.518202635607852 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KDELR3 ENSG00000100196 CDS Human protein_coding chr22:38870544 chr22:38870562 synonymous SNV . 0 39 hm5C_associated_SNPs_35919 0 0 1 0 2 KDELR3 chr22:38870528 3'AG 38870528 Downstream 35bp
chr22 38870562 38870562 1 + C T SKCM 38870544 + 38870524 38870564 41 ACAGGCATCTCTGGGAAGAGCCAGATCCTGTTTGCTCTCGT ACAGGCATCTCTGGGAAGAGCCAGATCCTGTTTGCTCTTGT < 41bp 1 0.740898682196074 1 0.224398165941238 experiment 0.518202635607852 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KDELR3 ENSG00000100196 CDS Human protein_coding chr22:38870544 chr22:38870562 synonymous SNV . 0 39 hm5C_associated_SNPs_35919 0 0 1 0 2 KDELR3 chr22:38870628 5'GT 38870628 Upstream 67bp
chr19 4222698 4222698 1 + T C SKCM 4222718 + 4222698 4222738 41 TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCGCCACC CTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCGCCACC < 41bp 1 0.296085740404267 1 0.329030096530914 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4222718 chr19:4222698 nonsynonymous SNV 0.983 3 1 hm5C_associated_SNPs_35920 0 0 0 0 2 ANKRD24 chr19:4222667 3'AG 4222667 Downstream 32bp
chr19 4222698 4222698 1 + T C SKCM 4222718 + 4222698 4222738 41 TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCGCCACC CTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCGCCACC < 41bp 1 0.296085740404267 1 0.329030096530914 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4222718 chr19:4222698 nonsynonymous SNV 0.983 3 1 hm5C_associated_SNPs_35920 0 0 0 0 2 ANKRD24 chr19:4222792 5'GT 4222792 Upstream 95bp
chr22 42280854 42280854 1 + C T SKCM 42280873 + 42280853 42280893 41 TCCTGCAGGATCCGCCTGTTCCGATGTACACATGGCGTTGT TTCTGCAGGATCCGCCTGTTCCGATGTACACATGGCGTTGT < 41bp 1 0.313488439672517 1 0.138618797063828 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42280873 chr22:42280854 nonsynonymous SNV 0.992 0 2 hm5C_associated_SNPs_35921 0 0 1 0 1 SREBF2 chr22:42280846 3'AG 42280846 Downstream 9bp
chr11 44193276 44193276 1 + A G SKCM 44193285 + 44193265 44193305 41 TGAAGAATGGAATGACCCTCCTGCTGTGGTAAGTGAATTCC TGAAGAATGGAGTGACCCTCCTGCTGTGGTAAGTGAATTCC < 41bp 1 0.639376931553477 1 0.230670571327209 experiment 0.721246136893047 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44193285 chr11:44193276 nonsynonymous SNV 1.000 5 12 hm5C_associated_SNPs_35922 0 0 1 0 2 EXT2 chr11:44193224 3'AG 44193224 Downstream 53bp
chr11 44193276 44193276 1 + A G SKCM 44193285 + 44193265 44193305 41 TGAAGAATGGAATGACCCTCCTGCTGTGGTAAGTGAATTCC TGAAGAATGGAGTGACCCTCCTGCTGTGGTAAGTGAATTCC < 41bp 1 0.639376931553477 1 0.230670571327209 experiment 0.721246136893047 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44193285 chr11:44193276 nonsynonymous SNV 1.000 5 12 hm5C_associated_SNPs_35922 0 0 1 0 2 EXT2 chr11:44193292 5'GT 44193292 Upstream 17bp
chr1 57161681 57161681 1 + C T SKCM 57161696 + 57161676 57161716 41 CCCTCCCATTTGATGATGAGCATGTACCTACGTTATTTAAG CCCTCTCATTTGATGATGAGCATGTACCTACGTTATTTAAG < 41bp 1 0.173626941717873 1 0.0320091247558594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57161696 chr1:57161681 nonsynonymous SNV 0.998 4 6 hm5C_associated_SNPs_35923 0 0 1 0 1 PRKAA2 chr1:57161608 3'AG 57161608 Downstream 74bp
chr1 220970049 220970049 1 + T C SKCM 220970029 + 220970009 220970049 41 CAGGGACTGTGGCGAGGCCACCGCCCAGTGGATAACCAGCT CAGGGACTGTGGCGAGGCCACCGCCCAGTGGATAACCAGCC < 41bp 1 0.293346573418661 1 0.180059134960175 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARC1 ENSG00000186205 CDS Human protein_coding chr1:220970029 chr1:220970049 nonsynonymous SNV 0.482 1 41 hm5C_associated_SNPs_35924 0 0 1 0 1 MARC1 chr1:220970147 5'GT 220970147 Upstream 99bp
chr6 44219205 44219205 1 + C T SKCM 44219187 + 44219167 44219207 41 GTGTGGTTGACTCTGAGGATCTGCCCCTGAACATCTCCCGA GTGTGGTTGACTCTGAGGATCTGCCCCTGAACATCTCCTGA < 41bp 1 0.339377057810934 1 0.101534873247147 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219187 chr6:44219205 stopgain 0.997 0 39 hm5C_associated_SNPs_35926 0 0 1 0 1 HSP90AB1 chr6:44219155 3'AG 44219155 Downstream 51bp
chrX 106884133 106884133 1 + G A SKCM 106884134 + 106884114 106884154 41 TTCCTCCCCTCCATTTAGAGCCGGGCGCCAATCTCAGCCAA TTCCTCCCCTCCATTTAGAACCGGGCGCCAATCTCAGCCAA < 41bp 1 0.481214341267604 1 0.823302328586578 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106884134 chrX:106884133 nonsynonymous SNV 0.997 3 20 hm5C_associated_SNPs_35927 0 0 1 0 2 PRPS1 chrX:106884132 3'AG 106884132 Downstream 2bp
chrX 106884133 106884133 1 + G A SKCM 106884134 + 106884114 106884154 41 TTCCTCCCCTCCATTTAGAGCCGGGCGCCAATCTCAGCCAA TTCCTCCCCTCCATTTAGAACCGGGCGCCAATCTCAGCCAA < 41bp 1 0.481214341267604 1 0.823302328586578 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106884134 chrX:106884133 nonsynonymous SNV 0.997 3 20 hm5C_associated_SNPs_35927 0 0 1 0 2 PRPS1 chrX:106884230 5'GT 106884230 Upstream 98bp
chrX 106884133 106884133 1 + G A SKCM 106884139 + 106884119 106884159 41 CCCCTCCATTTAGAGCCGGGCGCCAATCTCAGCCAAGCTTG CCCCTCCATTTAGAACCGGGCGCCAATCTCAGCCAAGCTTG < 41bp 1 0.597751967237125 1 0.122618794441223 experiment 0.804496065525749 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106884139 chrX:106884133 nonsynonymous SNV 0.997 3 15 hm5C_associated_SNPs_35928 0 0 1 0 2 PRPS1 chrX:106884132 3'AG 106884132 Downstream 2bp
chrX 106884133 106884133 1 + G A SKCM 106884139 + 106884119 106884159 41 CCCCTCCATTTAGAGCCGGGCGCCAATCTCAGCCAAGCTTG CCCCTCCATTTAGAACCGGGCGCCAATCTCAGCCAAGCTTG < 41bp 1 0.597751967237125 1 0.122618794441223 experiment 0.804496065525749 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106884139 chrX:106884133 nonsynonymous SNV 0.997 3 15 hm5C_associated_SNPs_35928 0 0 1 0 2 PRPS1 chrX:106884230 5'GT 106884230 Upstream 98bp
chr20 37632434 37632434 1 + C T SKCM 37632421 + 37632401 37632441 41 GAAACTGTTGTGTCGATGCTCATCGAGCAGGCTCGAGCACT GAAACTGTTGTGTCGATGCTCATCGAGCAGGCTTGAGCACT < 41bp 1 0.340026577590314 1 0.0509116053581238 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX35 ENSG00000101452 CDS Human protein_coding chr20:37632421 chr20:37632434 stopgain 0.850 1 34 hm5C_associated_SNPs_35929 0 0 1 0 1 DHX35 chr20:37632392 3'AG 37632392 Downstream 43bp
chr6 44219204 44219204 1 + C T SKCM 44219187 + 44219167 44219207 41 GTGTGGTTGACTCTGAGGATCTGCCCCTGAACATCTCCCGA GTGTGGTTGACTCTGAGGATCTGCCCCTGAACATCTCTCGA < 41bp 1 0.3440503467081 1 0.114313185214996 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219187 chr6:44219204 synonymous SNV . 0 38 hm5C_associated_SNPs_35930 0 0 1 0 1 HSP90AB1 chr6:44219155 3'AG 44219155 Downstream 50bp
chr2 27157527 27157527 1 + C T SKCM 27157542 + 27157522 27157562 41 CCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG CCACGTGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG < 41bp 1 0.411462279833082 1 0.859765768051147 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157542 chr2:27157527 nonsynonymous SNV 0.682 5 6 hm5C_associated_SNPs_35931 0 0 0 0 2 DPYSL5 chr2:27157446 3'AG 27157446 Downstream 82bp
chr2 27157527 27157527 1 + C T SKCM 27157542 + 27157522 27157562 41 CCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG CCACGTGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG < 41bp 1 0.411462279833082 1 0.859765768051147 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157542 chr2:27157527 nonsynonymous SNV 0.682 5 6 hm5C_associated_SNPs_35931 0 0 0 0 2 DPYSL5 chr2:27157602 5'GT 27157602 Upstream 76bp
chr9 130965819 130965819 1 + G A SKCM 130965827 + 130965807 130965847 41 TTCTCTGCCATCGGCCAGAACGCGGACCTCGACCTGCCGCA TTCTCTGCCATCAGCCAGAACGCGGACCTCGACCTGCCGCA < 41bp 1 0.769883558036435 1 0.909059703350067 experiment 0.46023288392713 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DNM1 ENSG00000106976 CDS Human protein_coding chr9:130965827 chr9:130965819 nonsynonymous SNV 0.998 3 13 hm5C_associated_SNPs_35932 0 0 1 0 1 DNM1 chr9:130965910 5'GT 130965910 Upstream 92bp
chr1 57157100 57157100 1 + T C SKCM 57157082 + 57157062 57157102 41 AAAAGATACCAGGTGATCAGCACTCCAACAGATTTTTTTAT AAAAGATACCAGGTGATCAGCACTCCAACAGATTTTTTCAT < 41bp 1 0.0544587118939268 1 0.120382726192474 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57157082 chr1:57157100 synonymous SNV . 0 39 hm5C_associated_SNPs_35933 0 0 1 0 2 PRKAA2 chr1:57157067 3'AG 57157067 Downstream 34bp
chr1 57157100 57157100 1 + T C SKCM 57157082 + 57157062 57157102 41 AAAAGATACCAGGTGATCAGCACTCCAACAGATTTTTTTAT AAAAGATACCAGGTGATCAGCACTCCAACAGATTTTTTCAT < 41bp 1 0.0544587118939268 1 0.120382726192474 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57157082 chr1:57157100 synonymous SNV . 0 39 hm5C_associated_SNPs_35933 0 0 1 0 2 PRKAA2 chr1:57157160 5'GT 57157160 Upstream 61bp
chr3 4776914 4776914 1 + T C SKCM 4776929 + 4776909 4776949 41 TCACCTTGACAAGGAGGGGGCTTCCAATCTAGTTATCGACC TCACCCTGACAAGGAGGGGGCTTCCAATCTAGTTATCGACC < 41bp 1 0.020619668840714 1 0.04947629570961 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4776929 chr3:4776914 nonsynonymous SNV 0.999 5 6 hm5C_associated_SNPs_35934 0 0 0 0 1 ITPR1 chr3:4776848 3'AG 4776848 Downstream 67bp
chr11 46392868 46392868 1 + C T SKCM 46392886 + 46392866 46392906 41 TTCCAGCAGAAGTTCACCTTCCACAGCAAGGAGATTGTGGC TTTCAGCAGAAGTTCACCTTCCACAGCAAGGAGATTGTGGC < 41bp 1 0.30880332866272 1 0.452838480472565 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46392886 chr11:46392868 synonymous SNV . 0 3 hm5C_associated_SNPs_35940 0 0 1 0 2 DGKZ chr11:46392863 3'AG 46392863 Downstream 6bp
chr11 46392868 46392868 1 + C T SKCM 46392886 + 46392866 46392906 41 TTCCAGCAGAAGTTCACCTTCCACAGCAAGGAGATTGTGGC TTTCAGCAGAAGTTCACCTTCCACAGCAAGGAGATTGTGGC < 41bp 1 0.30880332866272 1 0.452838480472565 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46392886 chr11:46392868 synonymous SNV . 0 3 hm5C_associated_SNPs_35940 0 0 1 0 2 DGKZ chr11:46392934 5'GT 46392934 Upstream 67bp
chr10 129142002 129142002 1 + C T SKCM 129141986 + 129141966 129142006 41 ACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTA ACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATTCTTA < 41bp 1 0.0364980780739303 1 0.259289383888245 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141986 chr10:129142002 synonymous SNV . 0 37 hm5C_associated_SNPs_35943 0 0 0 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 93bp
chr10 129142002 129142002 1 + C T SKCM 129141986 + 129141966 129142006 41 ACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTA ACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATTCTTA < 41bp 1 0.0364980780739303 1 0.259289383888245 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141986 chr10:129142002 synonymous SNV . 0 37 hm5C_associated_SNPs_35943 0 0 0 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 9bp
chr10 129142002 129142002 1 + C T SKCM 129141987 + 129141967 129142007 41 CTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAA CTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATTCTTAA < 41bp 1 0.418678111576926 1 0.412891685962677 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141987 chr10:129142002 synonymous SNV . 0 36 hm5C_associated_SNPs_35944 0 0 0 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 93bp
chr10 129142002 129142002 1 + C T SKCM 129141987 + 129141967 129142007 41 CTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAA CTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATTCTTAA < 41bp 1 0.418678111576926 1 0.412891685962677 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141987 chr10:129142002 synonymous SNV . 0 36 hm5C_associated_SNPs_35944 0 0 0 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 9bp
chr10 129142002 129142002 1 + C T SKCM 129141995 + 129141975 129142015 41 TTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAACAAGTAAG TTTTTCAAGTGCCAAGAGAGCCAAAATTCTTAACAAGTAAG < 41bp 1 0.0929502811666375 1 0.306327700614929 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141995 chr10:129142002 synonymous SNV . 0 28 hm5C_associated_SNPs_35945 0 0 0 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 93bp
chr10 129142002 129142002 1 + C T SKCM 129141995 + 129141975 129142015 41 TTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAACAAGTAAG TTTTTCAAGTGCCAAGAGAGCCAAAATTCTTAACAAGTAAG < 41bp 1 0.0929502811666375 1 0.306327700614929 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141995 chr10:129142002 synonymous SNV . 0 28 hm5C_associated_SNPs_35945 0 0 0 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 9bp
chr10 129142002 129142002 1 + C T SKCM 129142003 + 129141983 129142023 41 GTGCCAAGAGAGCCAAAATCCTTAACAAGTAAGTTCTCATC GTGCCAAGAGAGCCAAAATTCTTAACAAGTAAGTTCTCATC < 41bp 1 0.278847557663268 1 0.712663769721985 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129142003 chr10:129142002 synonymous SNV . 0 20 hm5C_associated_SNPs_35946 0 0 0 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 93bp
chr10 129142002 129142002 1 + C T SKCM 129142003 + 129141983 129142023 41 GTGCCAAGAGAGCCAAAATCCTTAACAAGTAAGTTCTCATC GTGCCAAGAGAGCCAAAATTCTTAACAAGTAAGTTCTCATC < 41bp 1 0.278847557663268 1 0.712663769721985 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129142003 chr10:129142002 synonymous SNV . 0 20 hm5C_associated_SNPs_35946 0 0 0 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 9bp
chr8 9567517 9567517 1 + T G SKCM 9567508 + 9567488 9567528 41 TCCCAAACGTAAACAAGTGACAGAATTGTTACTTAGAAAAG TCCCAAACGTAAACAAGTGACAGAATTGTGACTTAGAAAAG < 41bp 1 0.41988840923392 1 0.334607779979706 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TNKS ENSG00000173273 CDS Human protein_coding chr8:9567508 chr8:9567517 stopgain 0.964 1 30 hm5C_associated_SNPs_35947 0 0 1 0 1 TNKS chr8:9567465 3'AG 9567465 Downstream 53bp
chr7 43506125 43506125 1 + C T SKCM 43506109 + 43506089 43506129 41 AATCACCTTGCTGCTGCAGTCCCCAGCGGTCAAGTTCATCA AATCACCTTGCTGCTGCAGTCCCCAGCGGTCAAGTTTATCA < 41bp 1 0.299603351794774 1 0.174091637134552 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HECW1 ENSG00000002746 CDS Human protein_coding chr7:43506109 chr7:43506125 synonymous SNV . 0 37 hm5C_associated_SNPs_35949 0 0 0 0 2 HECW1 chr7:43506046 3'AG 43506046 Downstream 80bp
chr7 43506125 43506125 1 + C T SKCM 43506109 + 43506089 43506129 41 AATCACCTTGCTGCTGCAGTCCCCAGCGGTCAAGTTCATCA AATCACCTTGCTGCTGCAGTCCCCAGCGGTCAAGTTTATCA < 41bp 1 0.299603351794774 1 0.174091637134552 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HECW1 ENSG00000002746 CDS Human protein_coding chr7:43506109 chr7:43506125 synonymous SNV . 0 37 hm5C_associated_SNPs_35949 0 0 0 0 2 HECW1 chr7:43506167 5'GT 43506167 Upstream 43bp
chr22 42273342 42273342 1 + C T SKCM 42273332 + 42273312 42273352 41 TCCTGTGCCTCTCCTTTAACCCCCTGACTTCCCTGCTGCAG TCCTGTGCCTCTCCTTTAACCCCCTGACTTTCCTGCTGCAG < 41bp 1 0.203291299222465 1 0.036710262298584 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42273332 chr22:42273342 nonsynonymous SNV 0.990 0 31 hm5C_associated_SNPs_35950 0 0 1 0 1 SREBF2 chr22:42273425 5'GT 42273425 Upstream 84bp
chr6 30608368 30608368 1 + C T SKCM 30608360 + 30608340 30608380 41 TCGACACTCTCGTGCTGCTGCAGTCGATCCCACGCCCGCTG TCGACACTCTCGTGCTGCTGCAGTCGATTCCACGCCCGCTG < 41bp 1 0.20353867361347 1 0.609801888465881 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATAT1 ENSG00000137343 CDS Human protein_coding chr6:30608360 chr6:30608368 nonsynonymous SNV 0.043 0 29 hm5C_associated_SNPs_35951 0 0 0 0 2 ATAT1 chr6:30608312 3'AG 30608312 Downstream 57bp
chr6 30608368 30608368 1 + C T SKCM 30608360 + 30608340 30608380 41 TCGACACTCTCGTGCTGCTGCAGTCGATCCCACGCCCGCTG TCGACACTCTCGTGCTGCTGCAGTCGATTCCACGCCCGCTG < 41bp 1 0.20353867361347 1 0.609801888465881 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATAT1 ENSG00000137343 CDS Human protein_coding chr6:30608360 chr6:30608368 nonsynonymous SNV 0.043 0 29 hm5C_associated_SNPs_35951 0 0 0 0 2 ATAT1 chr6:30608380 5'GT 30608380 Upstream 13bp
chr15 40509708 40509708 1 + C T SKCM 40509700 + 40509680 40509720 41 CTTAAATCTGGGCTCAGAATCCACGATCCCTATGATTGTAA CTTAAATCTGGGCTCAGAATCCACGATCTCTATGATTGTAA < 41bp 1 0.148896452037039 1 0.388729512691498 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BUB1B ENSG00000156970 CDS Human protein_coding chr15:40509700 chr15:40509708 nonsynonymous SNV 0.980 0 29 hm5C_associated_SNPs_35957 0 0 1 0 1 BUB1B chr15:40509697 3'AG 40509697 Downstream 12bp
chr7 66489954 66489954 1 + C T SKCM 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTTCATT < 41bp 1 0.361894886773561 1 0.0993786752223969 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489954 nonsynonymous SNV 0.801 1 37 hm5C_associated_SNPs_35958 0 0 0 1 2 TYW1 chr7:66489887 3'AG 66489887 Downstream 68bp
chr7 66489954 66489954 1 + C T SKCM 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTTCATT < 41bp 1 0.361894886773561 1 0.0993786752223969 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489954 nonsynonymous SNV 0.801 1 37 hm5C_associated_SNPs_35958 0 0 0 1 2 TYW1 chr7:66490009 5'GT 66490009 Upstream 56bp
chr2 132257781 132257781 1 + T G SKCM 132257787 + 132257767 132257807 41 ATTGTTTCAGGAGCTGCACACCATCTTCCCATGGCTGGTAG ATTGTTTCAGGAGCGGCACACCATCTTCCCATGGCTGGTAG < 41bp 1 0.0591063780322176 1 0.259169697761536 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC150776 ENSG00000152117 ncRNA_exonic Human transcribed_processed_pseudogene chr2:132257787 chr2:132257781 . . 0 15 hm5C_associated_SNPs_35962 0 0 1 0 1 LOC150776 chr2:132257777 3'AG 132257777 Downstream 5bp
chr1 86048110 86048110 1 + G A SKCM 86048095 + 86048075 86048115 41 GTCTTCCCTCTTATATGTCTCTAGTTTTTGGAATGGAGCCT GTCTTCCCTCTTATATGTCTCTAGTTTTTGGAATGAAGCCT < 41bp 1 0.234431970609686 1 0.322045922279358 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CYR61 ENSG00000142871 CDS Human protein_coding chr1:86048095 chr1:86048110 nonsynonymous SNV 0.976 2 36 hm5C_associated_SNPs_35963 0 0 1 0 1 CYR61 chr1:86048099 3'AG 86048099 Downstream 12bp
chr19 17450299 17450299 1 + G A SKCM 17450306 + 17450286 17450326 41 CCGTGACGTGCTGGAGACCCCAGTCGACCTGGCCGGATTTC CCGTGACGTGCTGAAGACCCCAGTCGACCTGGCCGGATTTC < 41bp 1 0.27254026861995 1 0.848119378089905 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17450306 chr19:17450299 nonsynonymous SNV 0.998 4 14 hm5C_associated_SNPs_35964 0 0 1 0 1 GTPBP3 chr19:17450243 3'AG 17450243 Downstream 57bp
chr7 150773192 150773192 1 + C T SKCM 150773187 + 150773167 150773207 41 TCATGTCCACAGCTGCCTCCCTGGCCTTCCCCTTCATCCTC TCATGTCCACAGCTGCCTCCCTGGCTTTCCCCTTCATCCTC < 41bp 1 0.666963673459539 1 0.167963474988937 experiment 0.666072653080922 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150773187 chr7:150773192 synonymous SNV . 0 26 hm5C_associated_SNPs_35965 0 0 1 0 2 SLC4A2 chr7:150773100 3'AG 150773100 Downstream 93bp
chr7 150773192 150773192 1 + C T SKCM 150773187 + 150773167 150773207 41 TCATGTCCACAGCTGCCTCCCTGGCCTTCCCCTTCATCCTC TCATGTCCACAGCTGCCTCCCTGGCTTTCCCCTTCATCCTC < 41bp 1 0.666963673459539 1 0.167963474988937 experiment 0.666072653080922 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150773187 chr7:150773192 synonymous SNV . 0 26 hm5C_associated_SNPs_35965 0 0 1 0 2 SLC4A2 chr7:150773273 5'GT 150773273 Upstream 82bp
chr7 150773192 150773192 1 + C T SKCM 150773195 + 150773175 150773215 41 ACAGCTGCCTCCCTGGCCTTCCCCTTCATCCTCATCCTCAC ACAGCTGCCTCCCTGGCTTTCCCCTTCATCCTCATCCTCAC < 41bp 1 0.255413661333458 1 0.0438805818557739 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150773195 chr7:150773192 synonymous SNV . 0 18 hm5C_associated_SNPs_35966 0 0 1 0 2 SLC4A2 chr7:150773100 3'AG 150773100 Downstream 93bp
chr7 150773192 150773192 1 + C T SKCM 150773195 + 150773175 150773215 41 ACAGCTGCCTCCCTGGCCTTCCCCTTCATCCTCATCCTCAC ACAGCTGCCTCCCTGGCTTTCCCCTTCATCCTCATCCTCAC < 41bp 1 0.255413661333458 1 0.0438805818557739 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150773195 chr7:150773192 synonymous SNV . 0 18 hm5C_associated_SNPs_35966 0 0 1 0 2 SLC4A2 chr7:150773273 5'GT 150773273 Upstream 82bp
chr11 119142544 119142544 1 + T C SKCM 119142558 + 119142538 119142578 41 TCGGATTACTAAAGCAGATGCTGCGGAATTTTGGAGAAAAG TCGGATCACTAAAGCAGATGCTGCGGAATTTTGGAGAAAAG < 41bp 1 0.316360951223643 1 0.190338313579559 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CBL ENSG00000110395 CDS Human protein_coding chr11:119142558 chr11:119142544 synonymous SNV . 0 7 hm5C_associated_SNPs_35967 0 0 0 0 2 CBL chr11:119142445 3'AG 119142445 Downstream 100bp
chr11 119142544 119142544 1 + T C SKCM 119142558 + 119142538 119142578 41 TCGGATTACTAAAGCAGATGCTGCGGAATTTTGGAGAAAAG TCGGATCACTAAAGCAGATGCTGCGGAATTTTGGAGAAAAG < 41bp 1 0.316360951223643 1 0.190338313579559 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CBL ENSG00000110395 CDS Human protein_coding chr11:119142558 chr11:119142544 synonymous SNV . 0 7 hm5C_associated_SNPs_35967 0 0 0 0 2 CBL chr11:119142591 5'GT 119142591 Upstream 48bp
chr10 5963508 5963508 1 + C T SKCM 5963513 + 5963493 5963533 41 GACGGAAGGGGAATTCCCTTCAAGGATACATTTGATTGGGG GACGGAAGGGGAATTTCCTTCAAGGATACATTTGATTGGGG < 41bp 1 0.681983663733223 1 0.750527739524841 experiment 0.636032672533554 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963513 chr10:5963508 synonymous SNV . 0 16 hm5C_associated_SNPs_35968 0 0 1 0 2 FBXO18 chr10:5963411 3'AG 5963411 Downstream 98bp
chr10 5963508 5963508 1 + C T SKCM 5963513 + 5963493 5963533 41 GACGGAAGGGGAATTCCCTTCAAGGATACATTTGATTGGGG GACGGAAGGGGAATTTCCTTCAAGGATACATTTGATTGGGG < 41bp 1 0.681983663733223 1 0.750527739524841 experiment 0.636032672533554 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963513 chr10:5963508 synonymous SNV . 0 16 hm5C_associated_SNPs_35968 0 0 1 0 2 FBXO18 chr10:5963532 5'GT 5963532 Upstream 25bp
chr7 66489955 66489955 1 + C T SKCM 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCTATT < 41bp 1 0.381069277877289 1 0.0861095786094666 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489955 synonymous SNV . 0 38 hm5C_associated_SNPs_35969 0 0 0 1 2 TYW1 chr7:66489887 3'AG 66489887 Downstream 69bp
chr7 66489955 66489955 1 + C T SKCM 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCTATT < 41bp 1 0.381069277877289 1 0.0861095786094666 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489955 synonymous SNV . 0 38 hm5C_associated_SNPs_35969 0 0 0 1 2 TYW1 chr7:66490009 5'GT 66490009 Upstream 55bp
chr10 17278314 17278314 1 + C T SKCM 17278316 + 17278296 17278336 41 CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTCAAAA CTAATCTGGATTCACTCCTTCTGGTTGATACCCACTCAAAA < 41bp 1 0.282141963747637 1 0.558608770370483 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278316 chr10:17278314 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_35970 0 0 1 0 2 VIM chr10:17278293 3'AG 17278293 Downstream 22bp
chr10 17278314 17278314 1 + C T SKCM 17278316 + 17278296 17278336 41 CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTCAAAA CTAATCTGGATTCACTCCTTCTGGTTGATACCCACTCAAAA < 41bp 1 0.282141963747637 1 0.558608770370483 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278316 chr10:17278314 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_35970 0 0 1 0 2 VIM chr10:17278378 5'GT 17278378 Upstream 65bp
chr17 28772953 28772953 1 + C T SKCM 28772959 + 28772939 28772979 41 ATCTGGCTCTGGCTCTTTATCGATACCATTCCTACAAAGAC ATCTGGCTCTGGCTTTTTATCGATACCATTCCTACAAAGAC < 41bp 1 0.54778061550871 1 0.829916834831238 experiment 0.904438768982579 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPD ENSG00000108582 CDS Human protein_coding chr17:28772959 chr17:28772953 nonsynonymous SNV 0.999 1 15 hm5C_associated_SNPs_35973 0 0 1 0 1 CPD chr17:28773038 5'GT 28773038 Upstream 86bp
chr19 40719522 40719522 1 + C T SKCM 40719537 + 40719517 40719557 41 CCTCCCCGGGGGCGCGGGCGCCGTGGGAGCCGACGCCGTCC CCTCCTCGGGGGCGCGGGCGCCGTGGGAGCCGACGCCGTCC < 41bp 1 0.673294886653238 1 0.60652494430542 experiment 0.653410226693523 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40719537 chr19:40719522 nonsynonymous SNV 0.160 0 6 hm5C_associated_SNPs_35974 0 0 0 0 1 MAP3K10 chr19:40719424 3'AG 40719424 Downstream 99bp
chr5 149925012 149925012 1 + C A SKCM 149925006 + 149924986 149925026 41 CCCAAAGCCAAGGTCCTGACCATCCTCATCAACCCCGCGGA CCCAAAGCCAAGGTCCTGACCATCCTAATCAACCCCGCGGA < 41bp 1 0.167010576265542 1 0.0285009741783142 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDST1 ENSG00000070614 CDS Human protein_coding chr5:149925006 chr5:149925012 synonymous SNV . 0 27 hm5C_associated_SNPs_35975 0 0 1 0 1 NDST1 chr5:149925048 5'GT 149925048 Upstream 37bp
chr11 67075683 67075683 1 + C T SKCM 67075677 + 67075657 67075697 41 CTGGAGCTGCGCCTGGGGCTCCCCCTCCAGCAGTACCGTGA CTGGAGCTGCGCCTGGGGCTCCCCCTTCAGCAGTACCGTGA < 41bp 1 0.234127988834647 1 0.0591522753238678 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075677 chr11:67075683 synonymous SNV . 0 27 hm5C_associated_SNPs_35976 0 0 1 0 2 SSH3 chr11:67075645 3'AG 67075645 Downstream 39bp
chr11 67075683 67075683 1 + C T SKCM 67075677 + 67075657 67075697 41 CTGGAGCTGCGCCTGGGGCTCCCCCTCCAGCAGTACCGTGA CTGGAGCTGCGCCTGGGGCTCCCCCTTCAGCAGTACCGTGA < 41bp 1 0.234127988834647 1 0.0591522753238678 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075677 chr11:67075683 synonymous SNV . 0 27 hm5C_associated_SNPs_35976 0 0 1 0 2 SSH3 chr11:67075773 5'GT 67075773 Upstream 91bp
chr6 43188298 43188298 1 + C T SKCM 43188295 + 43188275 43188315 41 CCCGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC CCCGCCCAGCCCACCGGAGCCTTTATTCGTGCCATCGTCTC < 41bp 1 0.297554466738833 1 0.0922750234603882 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188295 chr6:43188298 synonymous SNV . 0 24 hm5C_associated_SNPs_35977 0 0 0 0 1 CUL9 chr6:43188337 5'GT 43188337 Upstream 40bp
chr12 122213562 122213562 1 + C T SKCM 122213570 + 122213550 122213590 41 CCTCGGCAACTTCCTGACCACGCTCAAAGTCGTGCATGCCA CCTCGGCAACTTTCTGACCACGCTCAAAGTCGTGCATGCCA < 41bp 1 0.10027162016434 1 0.0802081227302551 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM120B ENSG00000188735 CDS Human protein_coding chr12:122213570 chr12:122213562 nonsynonymous SNV 0.902 0 13 hm5C_associated_SNPs_35980 0 0 1 0 1 TMEM120B chr12:122213515 3'AG 122213515 Downstream 48bp
chr10 72324250 72324250 1 + G A SKCM 72324236 + 72324216 72324256 41 TACCTCCACCTGGAGAAGGCCGACTCCTGGCAGAGGCCCTT TACCTCCACCTGGAGAAGGCCGACTCCTGGCAGAAGCCCTT < 41bp 1 0.159129769508906 1 0.350291639566422 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72324236 chr10:72324250 nonsynonymous SNV 0.992 1 35 hm5C_associated_SNPs_35981 0 0 1 0 1 PALD1 chr10:72324275 5'GT 72324275 Upstream 26bp
chr8 38899577 38899577 1 + C T SKCM 38899581 + 38899561 38899601 41 TGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTGGTGG TGAAGCCTATAGTGCTTCCTCCTGTGGTAATAAGTTGGTGG < 41bp 1 0.215399995881178 1 0.458009839057922 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38899581 chr8:38899577 nonsynonymous SNV 0.997 4 17 hm5C_associated_SNPs_35982 0 0 1 0 1 ADAM9 chr8:38899636 5'GT 38899636 Upstream 60bp
chr10 103292172 103292172 1 + C T SKCM 103292177 + 103292157 103292197 41 ATAGTAAGCGGCCTTCGAGACAACACAATCAAGGTGAGGTC ATAGTAAGCGGCCTTTGAGACAACACAATCAAGGTGAGGTC < 41bp 1 0.581043602395974 1 0.326262354850769 experiment 0.837912795208053 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BTRC ENSG00000166167 CDS Human protein_coding chr10:103292177 chr10:103292172 stopgain 0.997 1 16 hm5C_associated_SNPs_35983 0 0 0 0 1 BTRC chr10:103292189 5'GT 103292189 Upstream 18bp
chr2 242396267 242396267 1 + C T SKCM 242396274 + 242396254 242396294 41 GAACAGGGCTCATCCCCACTCCTGAGCCCTGTCCTCAGTGA GAACAGGGCTCATTCCCACTCCTGAGCCCTGTCCTCAGTGA < 41bp 1 0.58679952885006 1 0.475684434175491 experiment 0.826400942299879 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FARP2 ENSG00000006607 CDS Human protein_coding chr2:242396274 chr2:242396267 nonsynonymous SNV 0.011 2 14 hm5C_associated_SNPs_35984 0 0 0 0 1 FARP2 chr2:242396337 5'GT 242396337 Upstream 71bp
chr14 105936405 105936405 1 + G A SKCM 105936408 + 105936388 105936428 41 ACCTCTGCCCACAGGAAGATCCGCAAGCTGCTCTCATCCTC ACCTCTGCCCACAGGAAAATCCGCAAGCTGCTCTCATCCTC < 41bp 1 0.749828064915529 1 0.322767615318298 experiment 0.500343870168942 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936408 chr14:105936405 synonymous SNV . 0 18 hm5C_associated_SNPs_35985 0 0 1 0 1 MTA1 chr14:105936402 3'AG 105936402 Downstream 4bp
chr19 49993751 49993751 1 + C T SKCM 49993749 + 49993729 49993769 41 TAGTGAAGTACCTGGCTTTCCTCCGCAAGCGGATGAACACC TAGTGAAGTACCTGGCTTTCCTTCGCAAGCGGATGAACACC < 41bp 1 0.544224542190639 1 0.0765743255615234 experiment 0.911550915618722 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993749 chr19:49993751 synonymous SNV . 0 23 hm5C_associated_SNPs_35986 0 0 1 0 2 RPL13A chr19:49993732 3'AG 49993732 Downstream 20bp
chr19 49993751 49993751 1 + C T SKCM 49993749 + 49993729 49993769 41 TAGTGAAGTACCTGGCTTTCCTCCGCAAGCGGATGAACACC TAGTGAAGTACCTGGCTTTCCTTCGCAAGCGGATGAACACC < 41bp 1 0.544224542190639 1 0.0765743255615234 experiment 0.911550915618722 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993749 chr19:49993751 synonymous SNV . 0 23 hm5C_associated_SNPs_35986 0 0 1 0 2 RPL13A chr19:49993833 5'GT 49993833 Upstream 83bp
chr19 49993752 49993752 1 + C T SKCM 49993749 + 49993729 49993769 41 TAGTGAAGTACCTGGCTTTCCTCCGCAAGCGGATGAACACC TAGTGAAGTACCTGGCTTTCCTCTGCAAGCGGATGAACACC < 41bp 1 0.609981887079809 1 0.167014867067337 experiment 0.780036225840381 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993749 chr19:49993752 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_35987 0 0 1 0 2 RPL13A chr19:49993732 3'AG 49993732 Downstream 21bp
chr19 49993752 49993752 1 + C T SKCM 49993749 + 49993729 49993769 41 TAGTGAAGTACCTGGCTTTCCTCCGCAAGCGGATGAACACC TAGTGAAGTACCTGGCTTTCCTCTGCAAGCGGATGAACACC < 41bp 1 0.609981887079809 1 0.167014867067337 experiment 0.780036225840381 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993749 chr19:49993752 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_35987 0 0 1 0 2 RPL13A chr19:49993833 5'GT 49993833 Upstream 82bp
chr5 172386889 172386889 1 + C T SKCM 172386906 + 172386886 172386926 41 AATCCCTTCGTTACCTCGGACCGCAGTAAAAACCGCAAACG AATTCCTTCGTTACCTCGGACCGCAGTAAAAACCGCAAACG < 41bp 1 0.658571553413818 1 0.222514867782593 experiment 0.682856893172364 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL26L1 ENSG00000037241 CDS Human protein_coding chr5:172386906 chr5:172386889 nonsynonymous SNV 0.956 0 4 hm5C_associated_SNPs_35988 0 0 1 0 1 RPL26L1 chr5:172386868 3'AG 172386868 Downstream 22bp
chr19 11105632 11105632 1 + G A SKCM 11105627 + 11105607 11105647 41 ATGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACGAGCGG ATGCCAACACGGAGCGGGAGCAGAAAAAAGAGAACGAGCGG < 41bp 1 0.589175336620489 1 0.618752896785736 experiment 0.821649326759021 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11105627 chr19:11105632 synonymous SNV . 0 26 hm5C_associated_SNPs_35989 0 0 1 0 1 SMARCA4 chr19:11105677 5'GT 11105677 Upstream 46bp
chr1 235577778 235577778 1 + G A SKCM 235577765 + 235577745 235577785 41 CAGGCACCCGACAGGAGGATCCTTTATTCGTCCGAACAAGG CAGGCACCCGACAGGAGGATCCTTTATTCGTCCAAACAAGG < 41bp 1 0.011604665527564 1 0.058920830488205 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235577765 chr1:235577778 synonymous SNV . 0 34 hm5C_associated_SNPs_35990 0 0 1 1 1 TBCE chr1:235577748 3'AG 235577748 Downstream 31bp
chr16 28950019 28950019 1 + G A SKCM 28950000 + 28949980 28950020 41 ATCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGA ATCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATAA < 41bp 1 0.096420925418294 1 0.0995245575904846 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950000 chr16:28950019 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_35992 0 0 1 0 3 CD19 chr16:28949994 3'AG 28949994 Downstream 26bp
chr16 28950019 28950019 1 + G A SKCM 28950000 + 28949980 28950020 41 ATCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGA ATCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATAA < 41bp 1 0.096420925418294 1 0.0995245575904846 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950000 chr16:28950019 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_35992 0 0 1 0 3 CD19 chr16:28949997 3'AG 28949997 Downstream 23bp
chr16 28950019 28950019 1 + G A SKCM 28950000 + 28949980 28950020 41 ATCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGA ATCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATAA < 41bp 1 0.096420925418294 1 0.0995245575904846 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950000 chr16:28950019 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_35992 0 0 1 0 3 CD19 chr16:28950089 5'GT 28950089 Upstream 71bp
chr16 28950019 28950019 1 + G A SKCM 28950001 + 28949981 28950021 41 TCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAG TCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATAAG < 41bp 1 0.0399710218033112 1 0.0513867735862732 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950001 chr16:28950019 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_35993 0 0 1 0 3 CD19 chr16:28949994 3'AG 28949994 Downstream 26bp
chr16 28950019 28950019 1 + G A SKCM 28950001 + 28949981 28950021 41 TCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAG TCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATAAG < 41bp 1 0.0399710218033112 1 0.0513867735862732 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950001 chr16:28950019 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_35993 0 0 1 0 3 CD19 chr16:28949997 3'AG 28949997 Downstream 23bp
chr16 28950019 28950019 1 + G A SKCM 28950001 + 28949981 28950021 41 TCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAG TCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATAAG < 41bp 1 0.0399710218033112 1 0.0513867735862732 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950001 chr16:28950019 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_35993 0 0 1 0 3 CD19 chr16:28950089 5'GT 28950089 Upstream 71bp
chr16 28950019 28950019 1 + G A SKCM 28950002 + 28949982 28950022 41 CCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAGA CCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATAAGA < 41bp 1 0.0749282633687388 1 0.145787209272385 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950002 chr16:28950019 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_35994 0 0 1 0 3 CD19 chr16:28949994 3'AG 28949994 Downstream 26bp
chr16 28950019 28950019 1 + G A SKCM 28950002 + 28949982 28950022 41 CCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAGA CCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATAAGA < 41bp 1 0.0749282633687388 1 0.145787209272385 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950002 chr16:28950019 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_35994 0 0 1 0 3 CD19 chr16:28949997 3'AG 28949997 Downstream 23bp
chr16 28950019 28950019 1 + G A SKCM 28950002 + 28949982 28950022 41 CCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAGA CCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATAAGA < 41bp 1 0.0749282633687388 1 0.145787209272385 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950002 chr16:28950019 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_35994 0 0 1 0 3 CD19 chr16:28950089 5'GT 28950089 Upstream 71bp
chr1 24996657 24996657 1 + C A SKCM 24996652 + 24996632 24996672 41 GTCTGTAAGAAGGGTCTCATCCTCCCGATCTGTCTCCGGGT GTCTGTAAGAAGGGTCTCATCCTCCAGATCTGTCTCCGGGT < 41bp 1 0.21164508877743 1 0.103985458612442 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996652 chr1:24996657 synonymous SNV . 0 26 hm5C_associated_SNPs_35995 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 47bp
chr1 24996657 24996657 1 + C A SKCM 24996673 + 24996653 24996693 41 CTCCCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAA CTCCAGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAA < 41bp 1 0.594042757874552 1 0.0278659164905548 experiment 0.811914484250896 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996673 chr1:24996657 synonymous SNV . 0 5 hm5C_associated_SNPs_35996 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 47bp
chr1 24996657 24996657 1 + C A SKCM 24996676 + 24996656 24996696 41 CCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGC CAGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGC < 41bp 1 0.584981988573968 1 0.391006827354431 experiment 0.830036022852064 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996676 chr1:24996657 synonymous SNV . 0 2 hm5C_associated_SNPs_35997 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 47bp
chr9 4697137 4697137 1 + G C SKCM 4697148 + 4697128 4697168 41 TTTTTGTCTGACCATCCATACCTTGTATGTGAAGAAACTGC TTTTTGTCTCACCATCCATACCTTGTATGTGAAGAAACTGC < 41bp 1 0.0458768972427765 1 0.0483539700508118 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC37L1 ENSG00000106993 CDS Human protein_coding chr9:4697148 chr9:4697137 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_35998 0 0 1 0 2 CDC37L1 chr9:4697096 3'AG 4697096 Downstream 42bp
chr9 4697137 4697137 1 + G C SKCM 4697148 + 4697128 4697168 41 TTTTTGTCTGACCATCCATACCTTGTATGTGAAGAAACTGC TTTTTGTCTCACCATCCATACCTTGTATGTGAAGAAACTGC < 41bp 1 0.0458768972427765 1 0.0483539700508118 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC37L1 ENSG00000106993 CDS Human protein_coding chr9:4697148 chr9:4697137 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_35998 0 0 1 0 2 CDC37L1 chr9:4697211 5'GT 4697211 Upstream 75bp
chr3 50614591 50614591 1 + C T SKCM 50614597 + 50614577 50614617 41 CAGGAGCCATCTCCCTCAGCCTGCTGAGCCAGCTCCCCCAG CAGGAGCCATCTCCTTCAGCCTGCTGAGCCAGCTCCCCCAG < 41bp 1 0.638661056747557 1 0.309989273548126 experiment 0.722677886504886 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614597 chr3:50614591 nonsynonymous SNV 0.697 4 15 hm5C_associated_SNPs_35999 0 0 0 0 1 HEMK1 chr3:50614617 5'GT 50614617 Upstream 27bp
chr9 134382804 134382804 1 + C T SKCM 134382812 + 134382792 134382832 41 GCTGCCAGCACTCGCGGGGGCCTTGTCGGTCCCCATGGCCT GCTGCCAGCACTTGCGGGGGCCTTGTCGGTCCCCATGGCCT < 41bp 1 0.0563571326008691 1 0.0561303794384003 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control POMT1 ENSG00000130714 CDS Human protein_coding chr9:134382812 chr9:134382804 synonymous SNV . 0 13 hm5C_associated_SNPs_36000 0 0 1 0 2 POMT1 chr9:134382755 3'AG 134382755 Downstream 50bp
chr9 134382804 134382804 1 + C T SKCM 134382812 + 134382792 134382832 41 GCTGCCAGCACTCGCGGGGGCCTTGTCGGTCCCCATGGCCT GCTGCCAGCACTTGCGGGGGCCTTGTCGGTCCCCATGGCCT < 41bp 1 0.0563571326008691 1 0.0561303794384003 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control POMT1 ENSG00000130714 CDS Human protein_coding chr9:134382812 chr9:134382804 synonymous SNV . 0 13 hm5C_associated_SNPs_36000 0 0 1 0 2 POMT1 chr9:134382901 5'GT 134382901 Upstream 98bp
chrX 152037407 152037407 1 + C T SKCM 152037426 + 152037406 152037446 41 GCCCCCAAGTACCACATCCCCTACTGGGTGGCCTACTACCT GTCCCCAAGTACCACATCCCCTACTGGGTGGCCTACTACCT < 41bp 1 0.52631310446461 1 0.0267917811870575 experiment 0.94737379107078 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NSDHL ENSG00000147383 CDS Human protein_coding chrX:152037426 chrX:152037407 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_36001 0 0 1 0 1 NSDHL chrX:152037328 3'AG 152037328 Downstream 80bp
chrX 152037408 152037408 1 + C T SKCM 152037426 + 152037406 152037446 41 GCCCCCAAGTACCACATCCCCTACTGGGTGGCCTACTACCT GCTCCCAAGTACCACATCCCCTACTGGGTGGCCTACTACCT < 41bp 1 0.588146580570876 1 0.0311009287834167 experiment 0.823706838858248 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NSDHL ENSG00000147383 CDS Human protein_coding chrX:152037426 chrX:152037408 synonymous SNV . 0 3 hm5C_associated_SNPs_36002 0 0 1 0 1 NSDHL chrX:152037328 3'AG 152037328 Downstream 81bp
chrX 153608125 153608125 1 + C T SKCM 153608138 + 153608118 153608158 41 CCCAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA CCCAGCTTGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA < 41bp 1 0.44197570031401 1 0.154167145490646 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608138 chrX:153608125 nonsynonymous SNV 0.079 3 8 hm5C_associated_SNPs_36003 0 0 1 0 2 EMD chrX:153608050 3'AG 153608050 Downstream 76bp
chrX 153608125 153608125 1 + C T SKCM 153608138 + 153608118 153608158 41 CCCAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA CCCAGCTTGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA < 41bp 1 0.44197570031401 1 0.154167145490646 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608138 chrX:153608125 nonsynonymous SNV 0.079 3 8 hm5C_associated_SNPs_36003 0 0 1 0 2 EMD chrX:153608154 5'GT 153608154 Upstream 30bp
chrX 153608125 153608125 1 + C T SKCM 153608140 + 153608120 153608160 41 CAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGAGA CAGCTTGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGAGA < 41bp 1 0.244472854517618 1 0.153422713279724 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608140 chrX:153608125 nonsynonymous SNV 0.079 3 6 hm5C_associated_SNPs_36004 0 0 1 0 2 EMD chrX:153608050 3'AG 153608050 Downstream 76bp
chrX 153608125 153608125 1 + C T SKCM 153608140 + 153608120 153608160 41 CAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGAGA CAGCTTGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGAGA < 41bp 1 0.244472854517618 1 0.153422713279724 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608140 chrX:153608125 nonsynonymous SNV 0.079 3 6 hm5C_associated_SNPs_36004 0 0 1 0 2 EMD chrX:153608154 5'GT 153608154 Upstream 30bp
chr8 41355112 41355112 1 + C T SKCM 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTCGGCGGCCAGTCATATTTCGAAGGTTGT < 41bp 1 0.111840628155382 1 0.198799312114716 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355112 nonsynonymous SNV 0.786 1 30 hm5C_associated_SNPs_36005 0 0 1 0 2 GOLGA7 chr8:41355028 3'AG 41355028 Downstream 85bp
chr8 41355112 41355112 1 + C T SKCM 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTCGGCGGCCAGTCATATTTCGAAGGTTGT < 41bp 1 0.111840628155382 1 0.198799312114716 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355112 nonsynonymous SNV 0.786 1 30 hm5C_associated_SNPs_36005 0 0 1 0 2 GOLGA7 chr8:41355180 5'GT 41355180 Upstream 69bp
chr16 30096328 30096328 1 + C T SKCM 30096347 + 30096327 30096367 41 CCCCAAGAGACACGGGGCATCCCCTCCAAGAAGCCCGTGGC CTCCAAGAGACACGGGGCATCCCCTCCAAGAAGCCCGTGGC < 41bp 1 0.311943630987438 1 0.110338866710663 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP4C ENSG00000149923 CDS Human protein_coding chr16:30096347 chr16:30096328 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_36006 0 0 1 1 1 PPP4C chr16:30096254 3'AG 30096254 Downstream 75bp
chr12 21207484 21207484 1 + G A SKCM 21207493 + 21207473 21207513 41 GCTTGTACAAGGAAATCTTACGTTTATTTTGTAATTCAAGT GCTTGTACAAGAAAATCTTACGTTTATTTTGTAATTCAAGT < 41bp 1 0.0701047723443588 1 0.080780953168869 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21207493 chr12:21207484 synonymous SNV . 0 12 hm5C_associated_SNPs_36007 0 0 0 0 2 SLCO1B7 chr12:21207386 3'AG 21207386 Downstream 99bp
chr12 21207484 21207484 1 + G A SKCM 21207493 + 21207473 21207513 41 GCTTGTACAAGGAAATCTTACGTTTATTTTGTAATTCAAGT GCTTGTACAAGAAAATCTTACGTTTATTTTGTAATTCAAGT < 41bp 1 0.0701047723443588 1 0.080780953168869 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21207493 chr12:21207484 synonymous SNV . 0 12 hm5C_associated_SNPs_36007 0 0 0 0 2 SLCO1B7 chr12:21207570 5'GT 21207570 Upstream 87bp
chr19 50880901 50880901 1 + G A SKCM 50880899 + 50880879 50880919 41 CGAGTTCCCTGGATACCCCCCTGCCTGGTGAGTGACTCTCT CGAGTTCCCTGGATACCCCCCTACCTGGTGAGTGACTCTCT < 41bp 1 0.113191635704976 1 0.627987265586853 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50880899 chr19:50880901 synonymous SNV . 0 23 hm5C_associated_SNPs_36009 0 0 0 0 2 NR1H2 chr19:50880844 3'AG 50880844 Downstream 58bp
chr19 50880901 50880901 1 + G A SKCM 50880899 + 50880879 50880919 41 CGAGTTCCCTGGATACCCCCCTGCCTGGTGAGTGACTCTCT CGAGTTCCCTGGATACCCCCCTACCTGGTGAGTGACTCTCT < 41bp 1 0.113191635704976 1 0.627987265586853 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50880899 chr19:50880901 synonymous SNV . 0 23 hm5C_associated_SNPs_36009 0 0 0 0 2 NR1H2 chr19:50880905 5'GT 50880905 Upstream 5bp
chr19 42373237 42373237 1 + C T SKCM 42373228 + 42373208 42373248 41 CGAGGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCT CGAGGCTCCAAGAGTGTGGCCCGCCGGGTTCTCCAAGCCCT < 41bp 1 0.233837575827331 1 0.0750759840011597 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373228 chr19:42373237 synonymous SNV . 0 30 hm5C_associated_SNPs_36010 0 0 1 0 1 RPS19 chr19:42373284 5'GT 42373284 Upstream 48bp
chr19 42373237 42373237 1 + C T SKCM 42373231 + 42373211 42373251 41 GGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCTGGA GGCTCCAAGAGTGTGGCCCGCCGGGTTCTCCAAGCCCTGGA < 41bp 1 0.697623756302245 1 0.452813267707825 experiment 0.604752487395509 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373231 chr19:42373237 synonymous SNV . 0 27 hm5C_associated_SNPs_36011 0 0 1 0 1 RPS19 chr19:42373284 5'GT 42373284 Upstream 48bp
chr7 100200132 100200132 1 + C T SKCM 100200134 + 100200114 100200154 41 CCCTCCTCACTGCCTGCGCCCTGCTGCCTTTTGCCCAGGGC CCCTCCTCACTGCCTGCGTCCTGCTGCCTTTTGCCCAGGGC < 41bp 1 0.280459501271405 1 0.383491396903992 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100200134 chr7:100200132 nonsynonymous SNV 0.992 1 19 hm5C_associated_SNPs_36012 0 0 1 0 1 PCOLCE chr7:100200174 5'GT 100200174 Upstream 43bp
chr4 169630191 169630191 1 + C T SKCM 169630201 + 169630181 169630221 41 GAGATTTGCACCCTAGTTATCGCTGAGACTTTCCCTGAAGA GAGATTTGCATCCTAGTTATCGCTGAGACTTTCCCTGAAGA < 41bp 1 0.214492973101602 1 0.504497110843658 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PALLD ENSG00000129116 CDS Human protein_coding chr4:169630201 chr4:169630191 nonsynonymous SNV 0.914 3 11 hm5C_associated_SNPs_36013 0 0 0 0 1 PALLD chr4:169630179 3'AG 169630179 Downstream 13bp
chr5 14280524 14280524 1 + C T SKCM 14280517 + 14280497 14280537 41 GACAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCCTGT GACAGGAGGATCTCAGGAGACTCATTTTCTATCTAGCCTGT < 41bp 1 0.264119716653161 1 0.0876598060131073 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14280517 chr5:14280524 nonsynonymous SNV 0.997 2 28 hm5C_associated_SNPs_36015 0 0 1 0 2 TRIO chr5:14280431 3'AG 14280431 Downstream 94bp
chr5 14280524 14280524 1 + C T SKCM 14280517 + 14280497 14280537 41 GACAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCCTGT GACAGGAGGATCTCAGGAGACTCATTTTCTATCTAGCCTGT < 41bp 1 0.264119716653161 1 0.0876598060131073 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14280517 chr5:14280524 nonsynonymous SNV 0.997 2 28 hm5C_associated_SNPs_36015 0 0 1 0 2 TRIO chr5:14280545 5'GT 14280545 Upstream 22bp
chr1 154306661 154306661 1 + C T SKCM 154306671 + 154306651 154306691 41 AATAAGTTCCCTCTGAGCAACCAGAACATGCTGCTGCGGGG AATAAGTTCCTTCTGAGCAACCAGAACATGCTGCTGCGGGG < 41bp 1 0.380436281547166 1 0.439347594976425 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154306671 chr1:154306661 nonsynonymous SNV 0.995 1 11 hm5C_associated_SNPs_36016 0 0 1 0 2 ATP8B2 chr1:154306583 3'AG 154306583 Downstream 79bp
chr1 154306661 154306661 1 + C T SKCM 154306671 + 154306651 154306691 41 AATAAGTTCCCTCTGAGCAACCAGAACATGCTGCTGCGGGG AATAAGTTCCTTCTGAGCAACCAGAACATGCTGCTGCGGGG < 41bp 1 0.380436281547166 1 0.439347594976425 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154306671 chr1:154306661 nonsynonymous SNV 0.995 1 11 hm5C_associated_SNPs_36016 0 0 1 0 2 ATP8B2 chr1:154306741 5'GT 154306741 Upstream 81bp
chr15 25220525 25220525 1 + G A SKCM 25220529 + 25220509 25220549 41 TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGA TTGGCAAGAGTAGCAAAATGCTGCAGCACATTGACTATAGA < 41bp 1 0.672366593699279 1 0.61433881521225 experiment 0.655266812601441 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25220529 chr15:25220525 synonymous SNV . 0 17 hm5C_associated_SNPs_36017 0 0 0 2 1 SNRPN chr15:25220505 3'AG 25220505 Downstream 21bp
chr11 119045960 119045960 1 + C T SKCM 119045961 + 119045941 119045981 41 GCTGCCTCTGCGGGCTCTGCCTCTGCTCTTCAACCTGATCA GCTGCCTCTGCGGGCTCTGTCTCTGCTCTTCAACCTGATCA < 41bp 1 0.407626234424338 1 0.739887356758118 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119045961 chr11:119045960 nonsynonymous SNV 0.996 0 20 hm5C_associated_SNPs_36023 0 0 0 0 1 NLRX1 chr11:119045983 5'GT 119045983 Upstream 24bp
chrX 131202542 131202542 1 + G A SKCM 131202534 + 131202514 131202554 41 ACACAGATTAAAAGAAATACCTTTGTGGGAACTCCATTTTG ACACAGATTAAAAGAAATACCTTTGTGGAAACTCCATTTTG < 41bp 1 0.378970709231537 1 0.0231605768203735 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STK26 ENSG00000134602 CDS Human protein_coding chrX:131202534 chrX:131202542 nonsynonymous SNV 0.995 4 29 hm5C_associated_SNPs_36024 0 0 1 0 1 STK26 chrX:131202597 5'GT 131202597 Upstream 56bp
chr1 28861653 28861653 1 + C T SKCM 28861637 + 28861617 28861657 41 TGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGCCTCA TGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGTCTCA < 41bp 1 0.238395635765394 1 0.258401334285736 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28861637 chr1:28861653 nonsynonymous SNV 0.998 2 37 hm5C_associated_SNPs_36025 0 0 1 0 2 RCC1 chr1:28861562 3'AG 28861562 Downstream 92bp
chr1 28861653 28861653 1 + C T SKCM 28861637 + 28861617 28861657 41 TGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGCCTCA TGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGTCTCA < 41bp 1 0.238395635765394 1 0.258401334285736 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28861637 chr1:28861653 nonsynonymous SNV 0.998 2 37 hm5C_associated_SNPs_36025 0 0 1 0 2 RCC1 chr1:28861658 5'GT 28861658 Upstream 6bp
chr20 42341730 42341730 1 + C T SKCM 42341738 + 42341718 42341758 41 TGTCCACACTGCCCAAGTCTCTATCCTTGGTAAGGCTTCTG TGTCCACACTGCTCAAGTCTCTATCCTTGGTAAGGCTTCTG < 41bp 1 0.0851824109103412 1 0.125099390745163 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42341738 chr20:42341730 nonsynonymous SNV 0.666 3 13 hm5C_associated_SNPs_36026 0 0 1 0 2 MYBL2 chr20:42341642 3'AG 42341642 Downstream 89bp
chr20 42341730 42341730 1 + C T SKCM 42341738 + 42341718 42341758 41 TGTCCACACTGCCCAAGTCTCTATCCTTGGTAAGGCTTCTG TGTCCACACTGCTCAAGTCTCTATCCTTGGTAAGGCTTCTG < 41bp 1 0.0851824109103412 1 0.125099390745163 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42341738 chr20:42341730 nonsynonymous SNV 0.666 3 13 hm5C_associated_SNPs_36026 0 0 1 0 2 MYBL2 chr20:42341746 5'GT 42341746 Upstream 17bp
chr20 42341730 42341730 1 + C T SKCM 42341742 + 42341722 42341762 41 CACACTGCCCAAGTCTCTATCCTTGGTAAGGCTTCTGCTCC CACACTGCTCAAGTCTCTATCCTTGGTAAGGCTTCTGCTCC < 41bp 1 0.0777911590043202 1 0.0597805678844452 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42341742 chr20:42341730 nonsynonymous SNV 0.666 3 9 hm5C_associated_SNPs_36027 0 0 1 0 2 MYBL2 chr20:42341642 3'AG 42341642 Downstream 89bp
chr20 42341730 42341730 1 + C T SKCM 42341742 + 42341722 42341762 41 CACACTGCCCAAGTCTCTATCCTTGGTAAGGCTTCTGCTCC CACACTGCTCAAGTCTCTATCCTTGGTAAGGCTTCTGCTCC < 41bp 1 0.0777911590043202 1 0.0597805678844452 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42341742 chr20:42341730 nonsynonymous SNV 0.666 3 9 hm5C_associated_SNPs_36027 0 0 1 0 2 MYBL2 chr20:42341746 5'GT 42341746 Upstream 17bp
chr3 58118625 58118625 1 + C T SKCM 58118613 + 58118593 58118633 41 CACCCCATCTCAGGAGGGACCTTACATGGTCTCAGTTAAAT CACCCCATCTCAGGAGGGACCTTACATGGTCTTAGTTAAAT < 41bp 1 0.0176469163403629 1 0.240211963653564 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58118613 chr3:58118625 nonsynonymous SNV 0.996 2 33 hm5C_associated_SNPs_36028 0 0 0 0 2 FLNB chr3:58118535 3'AG 58118535 Downstream 91bp
chr3 58118625 58118625 1 + C T SKCM 58118613 + 58118593 58118633 41 CACCCCATCTCAGGAGGGACCTTACATGGTCTCAGTTAAAT CACCCCATCTCAGGAGGGACCTTACATGGTCTTAGTTAAAT < 41bp 1 0.0176469163403629 1 0.240211963653564 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58118613 chr3:58118625 nonsynonymous SNV 0.996 2 33 hm5C_associated_SNPs_36028 0 0 0 0 2 FLNB chr3:58118658 5'GT 58118658 Upstream 34bp
chr3 184039162 184039162 1 + C T SKCM 184039163 + 184039143 184039183 41 CCAGCCTTCGTCGCCTTCTCCGACCCCATCACCATCCCCAG CCAGCCTTCGTCGCCTTCTTCGACCCCATCACCATCCCCAG < 41bp 1 0.467158629049713 1 0.926319241523743 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184039163 chr3:184039162 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_36029 0 0 1 0 1 EIF4G1 chr3:184039070 3'AG 184039070 Downstream 93bp
chr9 101765820 101765820 1 + G A SKCM 101765812 + 101765792 101765832 41 GCAGAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTC GCAGAGGCCAGCAGTGTGCCCACCGGGGAACCAACCCTCTC < 41bp 1 0.722738879882231 1 0.263670444488525 experiment 0.554522240235538 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765812 chr9:101765820 nonsynonymous SNV 0.002 3 29 hm5C_associated_SNPs_36030 0 0 0 0 2 COL15A1 chr9:101765735 3'AG 101765735 Downstream 86bp
chr9 101765820 101765820 1 + G A SKCM 101765812 + 101765792 101765832 41 GCAGAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTC GCAGAGGCCAGCAGTGTGCCCACCGGGGAACCAACCCTCTC < 41bp 1 0.722738879882231 1 0.263670444488525 experiment 0.554522240235538 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765812 chr9:101765820 nonsynonymous SNV 0.002 3 29 hm5C_associated_SNPs_36030 0 0 0 0 2 COL15A1 chr9:101765869 5'GT 101765869 Upstream 50bp
chr9 101765820 101765820 1 + G A SKCM 101765814 + 101765794 101765834 41 AGAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTCTA AGAGGCCAGCAGTGTGCCCACCGGGGAACCAACCCTCTCTA < 41bp 1 0.726129174988825 1 0.927618741989136 experiment 0.547741650022349 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765814 chr9:101765820 nonsynonymous SNV 0.002 3 27 hm5C_associated_SNPs_36031 0 0 0 0 2 COL15A1 chr9:101765735 3'AG 101765735 Downstream 86bp
chr9 101765820 101765820 1 + G A SKCM 101765814 + 101765794 101765834 41 AGAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTCTA AGAGGCCAGCAGTGTGCCCACCGGGGAACCAACCCTCTCTA < 41bp 1 0.726129174988825 1 0.927618741989136 experiment 0.547741650022349 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765814 chr9:101765820 nonsynonymous SNV 0.002 3 27 hm5C_associated_SNPs_36031 0 0 0 0 2 COL15A1 chr9:101765869 5'GT 101765869 Upstream 50bp
chr9 101765820 101765820 1 + G A SKCM 101765832 + 101765812 101765852 41 CACCGGGGGACCAACCCTCTCTATGTCCACGGAGAACCCAG CACCGGGGAACCAACCCTCTCTATGTCCACGGAGAACCCAG < 41bp 1 0.258133049134397 1 0.0961710214614868 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765832 chr9:101765820 nonsynonymous SNV 0.002 3 9 hm5C_associated_SNPs_36032 0 0 0 0 2 COL15A1 chr9:101765735 3'AG 101765735 Downstream 86bp
chr9 101765820 101765820 1 + G A SKCM 101765832 + 101765812 101765852 41 CACCGGGGGACCAACCCTCTCTATGTCCACGGAGAACCCAG CACCGGGGAACCAACCCTCTCTATGTCCACGGAGAACCCAG < 41bp 1 0.258133049134397 1 0.0961710214614868 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765832 chr9:101765820 nonsynonymous SNV 0.002 3 9 hm5C_associated_SNPs_36032 0 0 0 0 2 COL15A1 chr9:101765869 5'GT 101765869 Upstream 50bp
chr7 6641744 6641744 1 + C T SKCM 6641737 + 6641717 6641757 41 TCTCCTTAATTGCAGATGACCTGAGAACCTTGTGCTCCAGG TCTCCTTAATTGCAGATGACCTGAGAATCTTGTGCTCCAGG < 41bp 1 0.29137341695646 1 0.204672515392303 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6641737 chr7:6641744 nonsynonymous SNV 0.996 2 28 hm5C_associated_SNPs_36033 0 0 1 0 2 C7orf26 chr7:6641732 3'AG 6641732 Downstream 13bp
chr7 6641744 6641744 1 + C T SKCM 6641737 + 6641717 6641757 41 TCTCCTTAATTGCAGATGACCTGAGAACCTTGTGCTCCAGG TCTCCTTAATTGCAGATGACCTGAGAATCTTGTGCTCCAGG < 41bp 1 0.29137341695646 1 0.204672515392303 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6641737 chr7:6641744 nonsynonymous SNV 0.996 2 28 hm5C_associated_SNPs_36033 0 0 1 0 2 C7orf26 chr7:6641771 5'GT 6641771 Upstream 28bp
chr10 72324234 72324234 1 + G A SKCM 72324236 + 72324216 72324256 41 TACCTCCACCTGGAGAAGGCCGACTCCTGGCAGAGGCCCTT TACCTCCACCTGGAGAAGACCGACTCCTGGCAGAGGCCCTT < 41bp 1 0.221036761232055 1 0.219574332237244 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72324236 chr10:72324234 nonsynonymous SNV 0.102 0 19 hm5C_associated_SNPs_36034 0 0 0 0 1 PALD1 chr10:72324275 5'GT 72324275 Upstream 42bp
chr12 6635479 6635479 1 + C T SKCM 6635482 + 6635462 6635502 41 GGCAAACGTCACCCCCCCTTCCGGCTGCCTCAGGAACACAG GGCAAACGTCACCCCCCTTTCCGGCTGCCTCAGGAACACAG < 41bp 1 0.41442143484074 1 0.647736430168152 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6635482 chr12:6635479 synonymous SNV . 0 18 hm5C_associated_SNPs_36038 0 0 1 0 2 NCAPD2 chr12:6635453 3'AG 6635453 Downstream 27bp
chr12 6635479 6635479 1 + C T SKCM 6635482 + 6635462 6635502 41 GGCAAACGTCACCCCCCCTTCCGGCTGCCTCAGGAACACAG GGCAAACGTCACCCCCCTTTCCGGCTGCCTCAGGAACACAG < 41bp 1 0.41442143484074 1 0.647736430168152 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6635482 chr12:6635479 synonymous SNV . 0 18 hm5C_associated_SNPs_36038 0 0 1 0 2 NCAPD2 chr12:6635537 5'GT 6635537 Upstream 59bp
chr11 61106811 61106811 1 + C T SKCM 61106796 + 61106776 61106816 41 GGCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCGGT GGCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATTCCGGT < 41bp 1 0.608778772412926 1 0.383724093437195 experiment 0.782442455174149 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61106796 chr11:61106811 synonymous SNV . 0 36 hm5C_associated_SNPs_36039 0 0 1 0 2 TKFC chr11:61106726 3'AG 61106726 Downstream 86bp
chr11 61106811 61106811 1 + C T SKCM 61106796 + 61106776 61106816 41 GGCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCGGT GGCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATTCCGGT < 41bp 1 0.608778772412926 1 0.383724093437195 experiment 0.782442455174149 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61106796 chr11:61106811 synonymous SNV . 0 36 hm5C_associated_SNPs_36039 0 0 1 0 2 TKFC chr11:61106907 5'GT 61106907 Upstream 97bp
chr11 61106811 61106811 1 + C T SKCM 61106797 + 61106777 61106817 41 GCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCGGTG GCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATTCCGGTG < 41bp 1 0.783687865103129 1 0.680120289325714 experiment 0.432624269793741 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61106797 chr11:61106811 synonymous SNV . 0 35 hm5C_associated_SNPs_36040 0 0 1 0 2 TKFC chr11:61106726 3'AG 61106726 Downstream 86bp
chr11 61106811 61106811 1 + C T SKCM 61106797 + 61106777 61106817 41 GCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCGGTG GCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATTCCGGTG < 41bp 1 0.783687865103129 1 0.680120289325714 experiment 0.432624269793741 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61106797 chr11:61106811 synonymous SNV . 0 35 hm5C_associated_SNPs_36040 0 0 1 0 2 TKFC chr11:61106907 5'GT 61106907 Upstream 97bp
chr19 10893725 10893725 1 + C T SKCM 10893721 + 10893701 10893741 41 CTGGCAGCTGAGAGGAAGTTCTTCCTCTCCCACCCGGCCTA CTGGCAGCTGAGAGGAAGTTCTTCTTCTCCCACCCGGCCTA < 41bp 1 0.250112220189328 1 0.0824697911739349 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10893721 chr19:10893725 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_36042 0 0 1 0 1 DNM2 chr19:10893796 5'GT 10893796 Upstream 72bp
chr8 124219654 124219654 1 + C T SKCM 124219661 + 124219641 124219681 41 GCAGGCAGCCACCCCGGTACCCGAAGTGTGTCCGCGTCTTC GCAGGCAGCCACCTCGGTACCCGAAGTGTGTCCGCGTCTTC < 41bp 1 0.788169499173729 1 0.336025297641754 experiment 0.423661001652541 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM83A ENSG00000147689 CDS Human protein_coding chr8:124219661 chr8:124219654 nonsynonymous SNV 0.009 1 14 hm5C_associated_SNPs_36043 0 0 1 0 2 FAM83A chr8:124219656 5'GT 124219656 Upstream 3bp
chr8 124219654 124219654 1 + C T SKCM 124219661 + 124219641 124219681 41 GCAGGCAGCCACCCCGGTACCCGAAGTGTGTCCGCGTCTTC GCAGGCAGCCACCTCGGTACCCGAAGTGTGTCCGCGTCTTC < 41bp 1 0.788169499173729 1 0.336025297641754 experiment 0.423661001652541 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM83A ENSG00000147689 CDS Human protein_coding chr8:124219661 chr8:124219654 nonsynonymous SNV 0.009 1 14 hm5C_associated_SNPs_36043 0 0 1 0 2 FAM83A chr8:124219665 5'GT 124219665 Upstream 12bp
chr18 77457903 77457903 1 + G A SKCM 77457896 + 77457876 77457916 41 GAAGAGAAGACCAGCAGCGACTGCACCGAAACCGGAAGCTG GAAGAGAAGACCAGCAGCGACTGCACCAAAACCGGAAGCTG < 41bp 1 0.595638443669524 1 0.484692305326462 experiment 0.808723112660953 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77457896 chr18:77457903 nonsynonymous SNV 0.143 4 28 hm5C_associated_SNPs_36044 0 0 1 0 2 CTDP1 chr18:77457860 3'AG 77457860 Downstream 44bp
chr18 77457903 77457903 1 + G A SKCM 77457896 + 77457876 77457916 41 GAAGAGAAGACCAGCAGCGACTGCACCGAAACCGGAAGCTG GAAGAGAAGACCAGCAGCGACTGCACCAAAACCGGAAGCTG < 41bp 1 0.595638443669524 1 0.484692305326462 experiment 0.808723112660953 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77457896 chr18:77457903 nonsynonymous SNV 0.143 4 28 hm5C_associated_SNPs_36044 0 0 1 0 2 CTDP1 chr18:77457988 5'GT 77457988 Upstream 86bp
chr12 49724711 49724711 1 + C T SKCM 49724720 + 49724700 49724740 41 CTTTGAGACCCCCAGCAGGCCAGGCAGGTAAGGAGTTGGCT CTTTGAGACCCTCAGCAGGCCAGGCAGGTAAGGAGTTGGCT < 41bp 1 0.301346653098768 1 0.147789061069489 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TROAP ENSG00000135451 CDS Human protein_coding chr12:49724720 chr12:49724711 nonsynonymous SNV 0.005 0 12 hm5C_associated_SNPs_36045 0 0 1 0 1 TROAP chr12:49724726 5'GT 49724726 Upstream 16bp
chr11 2608837 2608837 1 + C T SKCM 2608838 + 2608818 2608858 41 GCTGCCGAGAACCCCGACTCCTCCACCTGGAAGATCTACAT GCTGCCGAGAACCCCGACTTCTCCACCTGGAAGATCTACAT < 41bp 1 0.68074073760646 1 0.945829153060913 experiment 0.638518524787079 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2608838 chr11:2608837 nonsynonymous SNV 0.790 3 20 hm5C_associated_SNPs_36046 0 0 0 0 2 KCNQ1 chr11:2608800 3'AG 2608800 Downstream 38bp
chr11 2608837 2608837 1 + C T SKCM 2608838 + 2608818 2608858 41 GCTGCCGAGAACCCCGACTCCTCCACCTGGAAGATCTACAT GCTGCCGAGAACCCCGACTTCTCCACCTGGAAGATCTACAT < 41bp 1 0.68074073760646 1 0.945829153060913 experiment 0.638518524787079 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2608838 chr11:2608837 nonsynonymous SNV 0.790 3 20 hm5C_associated_SNPs_36046 0 0 0 0 2 KCNQ1 chr11:2608922 5'GT 2608922 Upstream 86bp
chr2 189852856 189852856 1 + C T SKCM 189852859 + 189852839 189852879 41 ATCTGGTCATCCTGGTTCCCCTGTAAGTATAGCCATTGGTG ATCTGGTCATCCTGGTTTCCCTGTAAGTATAGCCATTGGTG < 41bp 1 0.439311511356293 1 0.417738318443298 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189852859 chr2:189852856 nonsynonymous SNV 0.932 1 18 hm5C_associated_SNPs_36047 0 0 0 0 2 COL3A1 chr2:189852807 3'AG 189852807 Downstream 50bp
chr2 189852856 189852856 1 + C T SKCM 189852859 + 189852839 189852879 41 ATCTGGTCATCCTGGTTCCCCTGTAAGTATAGCCATTGGTG ATCTGGTCATCCTGGTTTCCCTGTAAGTATAGCCATTGGTG < 41bp 1 0.439311511356293 1 0.417738318443298 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189852859 chr2:189852856 nonsynonymous SNV 0.932 1 18 hm5C_associated_SNPs_36047 0 0 0 0 2 COL3A1 chr2:189852860 5'GT 189852860 Upstream 5bp
chr9 131559401 131559401 1 + C T SKCM 131559385 + 131559365 131559405 41 AGGGCCACTGACTACCCTTGCCTCCTCATCCTGGACCCCCA AGGGCCACTGACTACCCTTGCCTCCTCATCCTGGACTCCCA < 41bp 1 0.0446653059265169 1 0.0512673556804657 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D13 ENSG00000107021 CDS Human protein_coding chr9:131559385 chr9:131559401 nonsynonymous SNV 0.984 1 37 hm5C_associated_SNPs_36048 0 0 1 0 2 TBC1D13 chr9:131559334 3'AG 131559334 Downstream 68bp
chr9 131559401 131559401 1 + C T SKCM 131559385 + 131559365 131559405 41 AGGGCCACTGACTACCCTTGCCTCCTCATCCTGGACCCCCA AGGGCCACTGACTACCCTTGCCTCCTCATCCTGGACTCCCA < 41bp 1 0.0446653059265169 1 0.0512673556804657 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D13 ENSG00000107021 CDS Human protein_coding chr9:131559385 chr9:131559401 nonsynonymous SNV 0.984 1 37 hm5C_associated_SNPs_36048 0 0 1 0 2 TBC1D13 chr9:131559493 5'GT 131559493 Upstream 93bp
chr19 6833264 6833264 1 + C T SKCM 6833263 + 6833243 6833283 41 GATGTTCTCCTTTGAGGAGACCACATCCTGCAAGGCCTGTC GATGTTCTCCTTTGAGGAGACTACATCCTGCAAGGCCTGTC < 41bp 1 0.68994784191913 1 0.519676446914673 experiment 0.620104316161739 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VAV1 ENSG00000141968 CDS Human protein_coding chr19:6833263 chr19:6833264 synonymous SNV . 0 22 hm5C_associated_SNPs_36049 0 0 0 0 2 VAV1 chr19:6833195 3'AG 6833195 Downstream 70bp
chr19 6833264 6833264 1 + C T SKCM 6833263 + 6833243 6833283 41 GATGTTCTCCTTTGAGGAGACCACATCCTGCAAGGCCTGTC GATGTTCTCCTTTGAGGAGACTACATCCTGCAAGGCCTGTC < 41bp 1 0.68994784191913 1 0.519676446914673 experiment 0.620104316161739 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VAV1 ENSG00000141968 CDS Human protein_coding chr19:6833263 chr19:6833264 synonymous SNV . 0 22 hm5C_associated_SNPs_36049 0 0 0 0 2 VAV1 chr19:6833296 5'GT 6833296 Upstream 33bp
chr19 35773543 35773543 1 + G A SKCM 35773554 + 35773534 35773574 41 CGCCAGCCTGACCAGTGGCTCTGTTTTCCCACAACAGGTGA CGCCAGCCTAACCAGTGGCTCTGTTTTCCCACAACAGGTGA < 41bp 1 0.32305050638708 1 0.0911121964454651 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HAMP ENSG00000105697 CDS Human protein_coding chr19:35773554 chr19:35773543 synonymous SNV . 0 10 hm5C_associated_SNPs_36051 0 0 1 0 1 HAMP chr19:35773570 5'GT 35773570 Upstream 28bp
chr22 41735888 41735888 1 + C T SKCM 41735900 + 41735880 41735920 41 CCCGTGTTCCCCGGCGGGACCCCACTGCTACCACCTGTGGT CCCGTGTTTCCCGGCGGGACCCCACTGCTACCACCTGTGGT < 41bp 1 0.0764734686513668 1 0.0619634985923767 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41735900 chr22:41735888 synonymous SNV . 0 9 hm5C_associated_SNPs_36054 0 0 1 0 1 ZC3H7B chr22:41735820 3'AG 41735820 Downstream 69bp
chr7 90355918 90355918 1 + G A SKCM 90355900 + 90355880 90355920 41 GATATGTGTCACAAAGATGTCTACACGGAACTGCCAGGGAA GATATGTGTCACAAAGATGTCTACACGGAACTGCCAGGAAA < 41bp 1 0.544891652687683 1 0.0789504945278168 experiment 0.910216694624634 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355900 chr7:90355918 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_36055 0 0 1 0 1 CDK14 chr7:90355881 3'AG 90355881 Downstream 38bp
chr7 90355918 90355918 1 + G A SKCM 90355903 + 90355883 90355923 41 ATGTGTCACAAAGATGTCTACACGGAACTGCCAGGGAATGG ATGTGTCACAAAGATGTCTACACGGAACTGCCAGGAAATGG < 41bp 1 0.36868302943955 1 0.0779419243335724 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355903 chr7:90355918 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_36056 0 0 1 0 1 CDK14 chr7:90355881 3'AG 90355881 Downstream 38bp
chr7 90355918 90355918 1 + G A SKCM 90355905 + 90355885 90355925 41 GTGTCACAAAGATGTCTACACGGAACTGCCAGGGAATGGAC GTGTCACAAAGATGTCTACACGGAACTGCCAGGAAATGGAC < 41bp 1 0.471947627027395 1 0.170041084289551 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355905 chr7:90355918 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_36057 0 0 1 0 1 CDK14 chr7:90355881 3'AG 90355881 Downstream 38bp
chr11 126143269 126143269 1 + C T SKCM 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTTCGGTTCA < 41bp 1 0.507234930478368 1 0.0860559642314911 experiment 0.985530139043264 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143269 synonymous SNV . 0 34 hm5C_associated_SNPs_36060 0 0 1 6 3 FOXRED1 chr11:126143211 3'AG 126143211 Downstream 59bp
chr11 126143269 126143269 1 + C T SKCM 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTTCGGTTCA < 41bp 1 0.507234930478368 1 0.0860559642314911 experiment 0.985530139043264 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143269 synonymous SNV . 0 34 hm5C_associated_SNPs_36060 0 0 1 6 3 FOXRED1 chr11:126143231 3'AG 126143231 Downstream 39bp
chr11 126143269 126143269 1 + C T SKCM 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTTCGGTTCA < 41bp 1 0.507234930478368 1 0.0860559642314911 experiment 0.985530139043264 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143269 synonymous SNV . 0 34 hm5C_associated_SNPs_36060 0 0 1 6 3 FOXRED1 chr11:126143349 5'GT 126143349 Upstream 81bp
chr12 56504387 56504387 1 + C T SKCM 56504375 + 56504355 56504395 41 GGACAGAGAACCACTATTTACAAACGAGACCCCTCTAAACA GGACAGAGAACCACTATTTACAAACGAGACCCTTCTAAACA < 41bp 1 0.32063902479897 1 0.158086866140366 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56504375 chr12:56504387 synonymous SNV . 0 33 hm5C_associated_SNPs_36061 0 0 1 0 2 PA2G4 chr12:56504343 3'AG 56504343 Downstream 45bp
chr12 56504387 56504387 1 + C T SKCM 56504375 + 56504355 56504395 41 GGACAGAGAACCACTATTTACAAACGAGACCCCTCTAAACA GGACAGAGAACCACTATTTACAAACGAGACCCTTCTAAACA < 41bp 1 0.32063902479897 1 0.158086866140366 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56504375 chr12:56504387 synonymous SNV . 0 33 hm5C_associated_SNPs_36061 0 0 1 0 2 PA2G4 chr12:56504476 5'GT 56504476 Upstream 90bp
chr7 128478853 128478853 1 + G A SKCM 128478838 + 128478818 128478858 41 CCCATCACCCGCAGTCCCTTCCCTGTCCATGTGTCGGAAGG CCCATCACCCGCAGTCCCTTCCCTGTCCATGTGTCAGAAGG < 41bp 1 0.0596246840750621 1 0.0370257198810577 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128478838 chr7:128478853 synonymous SNV . 0 36 hm5C_associated_SNPs_36062 0 0 1 0 1 FLNC chr7:128478857 5'GT 128478857 Upstream 5bp
chr19 58906062 58906062 1 + C T SKCM 58906069 + 58906049 58906089 41 GGCTCCTCGAACTCCTATGCCATTAAGAAGAAGGACGAGCT GGCTCCTCGAACTTCTATGCCATTAAGAAGAAGGACGAGCT < 41bp 1 0.217948717312637 1 0.0539397895336151 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906069 chr19:58906062 nonsynonymous SNV 0.998 3 14 hm5C_associated_SNPs_36064 0 0 1 0 1 RPS5 chr19:58906049 3'AG 58906049 Downstream 14bp
chr20 57478841 57478841 1 + C T SKCM 57478822 + 57478802 57478842 41 TACATCCTGAGTGTGATGAACGTGCCTGACTTTGACTTCCC TACATCCTGAGTGTGATGAACGTGCCTGACTTTGACTTCTC < 41bp 1 0.254032385180383 1 0.0473552346229553 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57478822 chr20:57478841 nonsynonymous SNV 0.998 2 40 hm5C_associated_SNPs_36067 0 0 1 2 1 GNAS chr20:57478846 5'GT 57478846 Upstream 6bp
chr20 57478841 57478841 1 + C T SKCM 57478840 + 57478820 57478860 41 AACGTGCCTGACTTTGACTTCCCTCCCGTAAGCTACACCCC AACGTGCCTGACTTTGACTTCTCTCCCGTAAGCTACACCCC < 41bp 1 0.141968773471262 1 0.116267085075378 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57478840 chr20:57478841 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_36068 0 0 1 2 1 GNAS chr20:57478846 5'GT 57478846 Upstream 6bp
chr14 20943236 20943236 1 + C T SKCM 20943217 + 20943197 20943237 41 GAGATAATTCAACCTGTGTCCTAGGTTTGGAGATCGTTTCC GAGATAATTCAACCTGTGTCCTAGGTTTGGAGATCGTTTTC < 41bp 1 0.502913606404595 1 0.217008173465729 experiment 0.994172787190809 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNP ENSG00000198805 CDS Human protein_coding chr14:20943217 chr14:20943236 synonymous SNV . 0 40 hm5C_associated_SNPs_36069 0 0 1 0 1 PNP chr14:20943221 3'AG 20943221 Downstream 16bp
chr3 130712923 130712923 1 + G A SKCM 130712932 + 130712912 130712952 41 TCCTAGTGGATGATGATTTTCAAACCATAATGTAAGCTTTG TCCTAGTGGATAATGATTTTCAAACCATAATGTAAGCTTTG < 41bp 1 0.246946610446781 1 0.285438567399979 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130712932 chr3:130712923 nonsynonymous SNV 0.993 5 12 hm5C_associated_SNPs_36070 0 0 1 0 1 ATP2C1 chr3:130712942 5'GT 130712942 Upstream 20bp
chr16 16230351 16230351 1 + C T SKCM 16230338 + 16230318 16230358 41 CTCTTCTCTCTGAACAGGACCCTGTTTTGTTTTCGGGTTCC CTCTTCTCTCTGAACAGGACCCTGTTTTGTTTTTGGGTTCC < 41bp 1 0.0381943788868918 1 0.0702213048934937 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16230338 chr16:16230351 nonsynonymous SNV 0.992 5 34 hm5C_associated_SNPs_36071 0 0 0 0 1 ABCC1 chr16:16230335 3'AG 16230335 Downstream 17bp
chr20 43052675 43052675 1 + G A SKCM 43052674 + 43052654 43052694 41 GTAGATGCCAAGGGGCTGAGCGATCCAGGGAAGATCAAGCG GTAGATGCCAAGGGGCTGAGCAATCCAGGGAAGATCAAGCG < 41bp 1 0.12363759056106 1 0.286897897720337 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HNF4A ENSG00000101076 CDS Human protein_coding chr20:43052674 chr20:43052675 nonsynonymous SNV 0.925 2 22 hm5C_associated_SNPs_36072 1 0 1 0 1 HNF4A chr20:43052658 3'AG 43052658 Downstream 18bp
chr13 93879776 93879776 1 + G A SKCM 93879771 + 93879751 93879791 41 GCTGCTGCTCTCCCTCCCCGCCGGGGCGGATGTGAAGGCTC GCTGCTGCTCTCCCTCCCCGCCGGGACGGATGTGAAGGCTC < 41bp 1 0.534685901414008 1 0.861261188983917 experiment 0.930628197171985 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPC6 ENSG00000183098 CDS Human protein_coding chr13:93879771 chr13:93879776 nonsynonymous SNV 0.997 0 26 hm5C_associated_SNPs_36073 0 0 1 0 1 GPC6 chr13:93879869 5'GT 93879869 Upstream 94bp
chr14 93125795 93125795 1 + C T SKCM 93125812 + 93125792 93125832 41 CTCCATGGCCCTCGGCAACCCAGGTCAGTGGGCAGCCGGGA CTCTATGGCCCTCGGCAACCCAGGTCAGTGGGCAGCCGGGA < 41bp 1 0.538286219671952 1 0.517688989639282 experiment 0.923427560656096 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93125812 chr14:93125795 synonymous SNV . 0 4 hm5C_associated_SNPs_36074 0 0 0 0 1 RIN3 chr14:93125814 5'GT 93125814 Upstream 20bp
chr20 44673674 44673674 1 + C T SKCM 44673677 + 44673657 44673697 41 TCTCCATGGGTAATTGTCATCGGATCCTTCTTCTCCACCTG TCTCCATGGGTAATTGTTATCGGATCCTTCTTCTCCACCTG < 41bp 1 0.656210788375948 1 0.77141261100769 experiment 0.687578423248104 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44673677 chr20:44673674 synonymous SNV . 0 18 hm5C_associated_SNPs_36075 0 0 0 0 1 SLC12A5 chr20:44673605 3'AG 44673605 Downstream 70bp
chr16 28843514 28843514 1 + C T SKCM 28843531 + 28843511 28843551 41 CCCCTTTTCTTCCAGTGGGCCGGATGTATCCCCCGCGTTCT CCCTTTTTCTTCCAGTGGGCCGGATGTATCCCCCGCGTTCT < 41bp 1 0.361200767058033 1 0.362997561693192 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28843531 chr16:28843514 nonsynonymous SNV 0.961 1 4 hm5C_associated_SNPs_36078 0 0 1 0 1 ATXN2L chr16:28843508 3'AG 28843508 Downstream 7bp
chr1 40922631 40922631 1 + C T SKCM 40922642 + 40922622 40922662 41 GTTAACCTTCAAGGACGTATCTGTGGACTTCACTCAGGAGG GTTAACCTTTAAGGACGTATCTGTGGACTTCACTCAGGAGG < 41bp 1 0.675348351213998 1 0.738748133182526 experiment 0.649303297572003 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZFP69B ENSG00000187801 CDS Human protein_coding chr1:40922642 chr1:40922631 stopgain 0.998 0 10 hm5C_associated_SNPs_36079 0 0 0 0 1 ZFP69B chr1:40922617 3'AG 40922617 Downstream 15bp
chr8 98837319 98837319 1 + C T SKCM 98837312 + 98837292 98837332 41 TTGATTAGCTGTGTTTGGAACTGCTACCGATACATCAATGG TTGATTAGCTGTGTTTGGAACTGCTACTGATACATCAATGG < 41bp 1 0.224674186508912 1 0.112635493278503 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAPTM4B ENSG00000104341 CDS Human protein_coding chr8:98837312 chr8:98837319 stopgain 0.983 1 28 hm5C_associated_SNPs_36080 0 0 1 0 1 LAPTM4B chr8:98837381 5'GT 98837381 Upstream 63bp
chr9 132623221 132623221 1 + C T SKCM 132623233 + 132623213 132623253 41 CAGGACTCCCCGCCACCCTCCCACCCTCTGAAAGCTGTTCC CAGGACTCTCCGCCACCCTCCCACCCTCTGAAAGCTGTTCC < 41bp 1 0.0225360886457839 1 0.215178996324539 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP20 ENSG00000136878 CDS Human protein_coding chr9:132623233 chr9:132623221 synonymous SNV . 0 9 hm5C_associated_SNPs_36081 0 0 0 0 2 USP20 chr9:132623216 3'AG 132623216 Downstream 6bp
chr9 132623221 132623221 1 + C T SKCM 132623233 + 132623213 132623253 41 CAGGACTCCCCGCCACCCTCCCACCCTCTGAAAGCTGTTCC CAGGACTCTCCGCCACCCTCCCACCCTCTGAAAGCTGTTCC < 41bp 1 0.0225360886457839 1 0.215178996324539 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP20 ENSG00000136878 CDS Human protein_coding chr9:132623233 chr9:132623221 synonymous SNV . 0 9 hm5C_associated_SNPs_36081 0 0 0 0 2 USP20 chr9:132623312 5'GT 132623312 Upstream 92bp
chr7 101188637 101188637 1 + G A SKCM 101188639 + 101188619 101188659 41 GGCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAG GGCTCCTGGGGCCTCCAGAGCCCCGTGGGCTTCCTGGAGAG < 41bp 1 0.382879089972761 1 0.469474524259567 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188639 chr7:101188637 nonsynonymous SNV 0.952 4 19 hm5C_associated_SNPs_36082 0 0 0 0 1 COL26A1 chr7:101188619 3'AG 101188619 Downstream 19bp
chr7 101188637 101188637 1 + G A SKCM 101188640 + 101188620 101188660 41 GCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAGA GCTCCTGGGGCCTCCAGAGCCCCGTGGGCTTCCTGGAGAGA < 41bp 1 0.420534855714858 1 0.207525700330734 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188640 chr7:101188637 nonsynonymous SNV 0.952 4 18 hm5C_associated_SNPs_36083 0 0 0 0 1 COL26A1 chr7:101188619 3'AG 101188619 Downstream 19bp
chr7 101188637 101188637 1 + G A SKCM 101188641 + 101188621 101188661 41 CTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAGAT CTCCTGGGGCCTCCAGAGCCCCGTGGGCTTCCTGGAGAGAT < 41bp 1 0.24199671775625 1 0.400004178285599 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188641 chr7:101188637 nonsynonymous SNV 0.952 4 17 hm5C_associated_SNPs_36084 0 0 0 0 1 COL26A1 chr7:101188619 3'AG 101188619 Downstream 19bp
chr9 21859391 21859391 1 + C T SKCM 21859402 + 21859382 21859422 41 GATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGA GATAGGGTCTACAGAATGGTCAGAAACCCTCCATAACCTGA < 41bp 1 0.669768469653769 1 0.473857343196869 experiment 0.660463060692463 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTAP ENSG00000099810 CDS Human protein_coding chr9:21859402 chr9:21859391 synonymous SNV . 0 10 hm5C_associated_SNPs_36085 0 0 1 0 2 MTAP chr9:21859302 3'AG 21859302 Downstream 90bp
chr9 21859391 21859391 1 + C T SKCM 21859402 + 21859382 21859422 41 GATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGA GATAGGGTCTACAGAATGGTCAGAAACCCTCCATAACCTGA < 41bp 1 0.669768469653769 1 0.473857343196869 experiment 0.660463060692463 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTAP ENSG00000099810 CDS Human protein_coding chr9:21859402 chr9:21859391 synonymous SNV . 0 10 hm5C_associated_SNPs_36085 0 0 1 0 2 MTAP chr9:21859424 5'GT 21859424 Upstream 34bp
chr14 20943237 20943237 1 + C T SKCM 20943217 + 20943197 20943237 41 GAGATAATTCAACCTGTGTCCTAGGTTTGGAGATCGTTTCC GAGATAATTCAACCTGTGTCCTAGGTTTGGAGATCGTTTCT < 41bp 1 0.462955915662188 1 0.181975454092026 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNP ENSG00000198805 CDS Human protein_coding chr14:20943217 chr14:20943237 nonsynonymous SNV 0.997 5 41 hm5C_associated_SNPs_36087 0 0 1 0 1 PNP chr14:20943221 3'AG 20943221 Downstream 17bp
chr14 21464991 21464991 1 + C T SKCM 21464984 + 21464964 21465004 41 GTGTCAGCTCCTGGGGAGATCTTTTACCTGTGCTTACTCCG GTGTCAGCTCCTGGGGAGATCTTTTACTTGTGCTTACTCCG < 41bp 1 0.148635003665695 1 0.38956406712532 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control METTL17 ENSG00000165792 CDS Human protein_coding chr14:21464984 chr14:21464991 nonsynonymous SNV 0.960 3 28 hm5C_associated_SNPs_36088 0 0 1 0 2 METTL17 chr14:21464944 3'AG 21464944 Downstream 48bp
chr14 21464991 21464991 1 + C T SKCM 21464984 + 21464964 21465004 41 GTGTCAGCTCCTGGGGAGATCTTTTACCTGTGCTTACTCCG GTGTCAGCTCCTGGGGAGATCTTTTACTTGTGCTTACTCCG < 41bp 1 0.148635003665695 1 0.38956406712532 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control METTL17 ENSG00000165792 CDS Human protein_coding chr14:21464984 chr14:21464991 nonsynonymous SNV 0.960 3 28 hm5C_associated_SNPs_36088 0 0 1 0 2 METTL17 chr14:21464971 3'AG 21464971 Downstream 21bp
chr9 133507337 133507337 1 + C T SKCM 133507332 + 133507312 133507352 41 CTTTTACCTTTTCCCAGTACCTTTCCTCCAAGGAGCTCCGG CTTTTACCTTTTCCCAGTACCTTTCTTCCAAGGAGCTCCGG < 41bp 1 0.0767891630575099 1 0.0187589228153229 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133507332 chr9:133507337 nonsynonymous SNV 0.599 1 26 hm5C_associated_SNPs_36089 0 0 1 0 2 FUBP3 chr9:133507329 3'AG 133507329 Downstream 9bp
chr9 133507337 133507337 1 + C T SKCM 133507332 + 133507312 133507352 41 CTTTTACCTTTTCCCAGTACCTTTCCTCCAAGGAGCTCCGG CTTTTACCTTTTCCCAGTACCTTTCTTCCAAGGAGCTCCGG < 41bp 1 0.0767891630575099 1 0.0187589228153229 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133507332 chr9:133507337 nonsynonymous SNV 0.599 1 26 hm5C_associated_SNPs_36089 0 0 1 0 2 FUBP3 chr9:133507409 5'GT 133507409 Upstream 73bp
chr6 138202199 138202199 1 + C T SKCM 138202184 + 138202164 138202204 41 CCACTCAGAGATCGAGCCAGCGCAGAGATGTGCCTCGAACC CCACTCAGAGATCGAGCCAGCGCAGAGATGTGCCTTGAACC < 41bp 1 0.315866489672733 1 0.520382225513458 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TNFAIP3 ENSG00000118503 CDS Human protein_coding chr6:138202184 chr6:138202199 stopgain 0.756 0 36 hm5C_associated_SNPs_36090 0 0 1 0 1 TNFAIP3 chr6:138202172 3'AG 138202172 Downstream 28bp
chr1 22332005 22332005 1 + C T SKCM 22331987 + 22331967 22332007 41 AGCTTCTACCACACGTGTGGCGGTAGCCTCATCGCCCCCGA AGCTTCTACCACACGTGTGGCGGTAGCCTCATCGCCCCTGA < 41bp 1 0.756055671726365 1 0.562098801136017 experiment 0.48788865654727 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331987 chr1:22332005 synonymous SNV . 0 39 hm5C_associated_SNPs_36091 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 66bp
chr1 22332005 22332005 1 + C T SKCM 22331987 + 22331967 22332007 41 AGCTTCTACCACACGTGTGGCGGTAGCCTCATCGCCCCCGA AGCTTCTACCACACGTGTGGCGGTAGCCTCATCGCCCCTGA < 41bp 1 0.756055671726365 1 0.562098801136017 experiment 0.48788865654727 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331987 chr1:22332005 synonymous SNV . 0 39 hm5C_associated_SNPs_36091 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 33bp
chr1 22332005 22332005 1 + C T SKCM 22331993 + 22331973 22332013 41 TACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGT TACCACACGTGTGGCGGTAGCCTCATCGCCCCTGATTGGGT < 41bp 1 0.320707381042717 1 0.114874571561813 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331993 chr1:22332005 synonymous SNV . 0 33 hm5C_associated_SNPs_36092 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 66bp
chr1 22332005 22332005 1 + C T SKCM 22331993 + 22331973 22332013 41 TACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGT TACCACACGTGTGGCGGTAGCCTCATCGCCCCTGATTGGGT < 41bp 1 0.320707381042717 1 0.114874571561813 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331993 chr1:22332005 synonymous SNV . 0 33 hm5C_associated_SNPs_36092 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 33bp
chr1 22332005 22332005 1 + C T SKCM 22331994 + 22331974 22332014 41 ACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTT ACCACACGTGTGGCGGTAGCCTCATCGCCCCTGATTGGGTT < 41bp 1 0.601591680935536 1 0.330029726028442 experiment 0.796816638128927 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331994 chr1:22332005 synonymous SNV . 0 32 hm5C_associated_SNPs_36093 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 66bp
chr1 22332005 22332005 1 + C T SKCM 22331994 + 22331974 22332014 41 ACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTT ACCACACGTGTGGCGGTAGCCTCATCGCCCCTGATTGGGTT < 41bp 1 0.601591680935536 1 0.330029726028442 experiment 0.796816638128927 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331994 chr1:22332005 synonymous SNV . 0 32 hm5C_associated_SNPs_36093 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 33bp
chr1 22332005 22332005 1 + C T SKCM 22331996 + 22331976 22332016 41 CACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGT CACACGTGTGGCGGTAGCCTCATCGCCCCTGATTGGGTTGT < 41bp 1 0.334158061678512 1 0.438875615596771 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331996 chr1:22332005 synonymous SNV . 0 30 hm5C_associated_SNPs_36094 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 66bp
chr1 22332005 22332005 1 + C T SKCM 22331996 + 22331976 22332016 41 CACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGT CACACGTGTGGCGGTAGCCTCATCGCCCCTGATTGGGTTGT < 41bp 1 0.334158061678512 1 0.438875615596771 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331996 chr1:22332005 synonymous SNV . 0 30 hm5C_associated_SNPs_36094 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 33bp
chr1 22332005 22332005 1 + C T SKCM 22331999 + 22331979 22332019 41 ACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGAC ACGTGTGGCGGTAGCCTCATCGCCCCTGATTGGGTTGTGAC < 41bp 1 0.554483062602113 1 0.437813073396683 experiment 0.891033874795773 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331999 chr1:22332005 synonymous SNV . 0 27 hm5C_associated_SNPs_36095 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 66bp
chr1 22332005 22332005 1 + C T SKCM 22331999 + 22331979 22332019 41 ACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGAC ACGTGTGGCGGTAGCCTCATCGCCCCTGATTGGGTTGTGAC < 41bp 1 0.554483062602113 1 0.437813073396683 experiment 0.891033874795773 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331999 chr1:22332005 synonymous SNV . 0 27 hm5C_associated_SNPs_36095 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 33bp
chr1 22332005 22332005 1 + C T SKCM 22332001 + 22331981 22332021 41 GTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTG GTGTGGCGGTAGCCTCATCGCCCCTGATTGGGTTGTGACTG < 41bp 1 0.504380418993729 1 0.262170553207397 experiment 0.991239162012541 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332001 chr1:22332005 synonymous SNV . 0 25 hm5C_associated_SNPs_36096 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 66bp
chr1 22332005 22332005 1 + C T SKCM 22332001 + 22331981 22332021 41 GTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTG GTGTGGCGGTAGCCTCATCGCCCCTGATTGGGTTGTGACTG < 41bp 1 0.504380418993729 1 0.262170553207397 experiment 0.991239162012541 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332001 chr1:22332005 synonymous SNV . 0 25 hm5C_associated_SNPs_36096 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 33bp
chr1 22332005 22332005 1 + C T SKCM 22332002 + 22331982 22332022 41 TGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGC TGTGGCGGTAGCCTCATCGCCCCTGATTGGGTTGTGACTGC < 41bp 1 0.358907268584962 1 0.70002019405365 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332002 chr1:22332005 synonymous SNV . 0 24 hm5C_associated_SNPs_36097 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 66bp
chr1 22332005 22332005 1 + C T SKCM 22332002 + 22331982 22332022 41 TGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGC TGTGGCGGTAGCCTCATCGCCCCTGATTGGGTTGTGACTGC < 41bp 1 0.358907268584962 1 0.70002019405365 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332002 chr1:22332005 synonymous SNV . 0 24 hm5C_associated_SNPs_36097 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 33bp
chr1 22332005 22332005 1 + C T SKCM 22332003 + 22331983 22332023 41 GTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCC GTGGCGGTAGCCTCATCGCCCCTGATTGGGTTGTGACTGCC < 41bp 1 0.495363161820646 1 0.107226878404617 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332003 chr1:22332005 synonymous SNV . 0 23 hm5C_associated_SNPs_36098 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 66bp
chr1 22332005 22332005 1 + C T SKCM 22332003 + 22331983 22332023 41 GTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCC GTGGCGGTAGCCTCATCGCCCCTGATTGGGTTGTGACTGCC < 41bp 1 0.495363161820646 1 0.107226878404617 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332003 chr1:22332005 synonymous SNV . 0 23 hm5C_associated_SNPs_36098 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 33bp
chr1 22332005 22332005 1 + C T SKCM 22332004 + 22331984 22332024 41 TGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCG TGGCGGTAGCCTCATCGCCCCTGATTGGGTTGTGACTGCCG < 41bp 1 0.377847937845155 1 0.0474604070186615 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332004 chr1:22332005 synonymous SNV . 0 22 hm5C_associated_SNPs_36099 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 66bp
chr1 22332005 22332005 1 + C T SKCM 22332004 + 22331984 22332024 41 TGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCG TGGCGGTAGCCTCATCGCCCCTGATTGGGTTGTGACTGCCG < 41bp 1 0.377847937845155 1 0.0474604070186615 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332004 chr1:22332005 synonymous SNV . 0 22 hm5C_associated_SNPs_36099 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 33bp
chr1 22332005 22332005 1 + C T SKCM 22332019 + 22331999 22332039 41 CGCCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGT CGCCCCTGATTGGGTTGTGACTGCCGGCCACTGCATCTCGT < 41bp 1 0.606071708331469 1 0.359561204910278 experiment 0.787856583337062 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332019 chr1:22332005 synonymous SNV . 0 7 hm5C_associated_SNPs_36100 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 66bp
chr1 22332005 22332005 1 + C T SKCM 22332019 + 22331999 22332039 41 CGCCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGT CGCCCCTGATTGGGTTGTGACTGCCGGCCACTGCATCTCGT < 41bp 1 0.606071708331469 1 0.359561204910278 experiment 0.787856583337062 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332019 chr1:22332005 synonymous SNV . 0 7 hm5C_associated_SNPs_36100 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 33bp
chr1 22332005 22332005 1 + C T SKCM 22332022 + 22332002 22332042 41 CCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAG CCCTGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAG < 41bp 1 0.432853151580931 1 0.5584357380867 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332022 chr1:22332005 synonymous SNV . 0 4 hm5C_associated_SNPs_36101 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 66bp
chr1 22332005 22332005 1 + C T SKCM 22332022 + 22332002 22332042 41 CCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAG CCCTGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAG < 41bp 1 0.432853151580931 1 0.5584357380867 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332022 chr1:22332005 synonymous SNV . 0 4 hm5C_associated_SNPs_36101 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 33bp
chr1 22332005 22332005 1 + C T SKCM 22332023 + 22332003 22332043 41 CCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGT CCTGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGT < 41bp 1 0.52772340332787 1 0.366116017103195 experiment 0.944553193344261 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332023 chr1:22332005 synonymous SNV . 0 3 hm5C_associated_SNPs_36102 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 66bp
chr1 22332005 22332005 1 + C T SKCM 22332023 + 22332003 22332043 41 CCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGT CCTGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGT < 41bp 1 0.52772340332787 1 0.366116017103195 experiment 0.944553193344261 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332023 chr1:22332005 synonymous SNV . 0 3 hm5C_associated_SNPs_36102 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 33bp
chr9 93624558 93624558 1 + C T SKCM 93624554 + 93624534 93624574 41 CACGAAGGGAAGGTGCTGCACTATCGCATCGACAAAGACAA CACGAAGGGAAGGTGCTGCACTATTGCATCGACAAAGACAA < 41bp 1 0.245113446386079 1 0.0466794669628143 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYK ENSG00000165025 CDS Human protein_coding chr9:93624554 chr9:93624558 nonsynonymous SNV 0.968 5 25 hm5C_associated_SNPs_36105 0 0 0 1 2 SYK chr9:93624488 3'AG 93624488 Downstream 71bp
chr9 93624558 93624558 1 + C T SKCM 93624554 + 93624534 93624574 41 CACGAAGGGAAGGTGCTGCACTATCGCATCGACAAAGACAA CACGAAGGGAAGGTGCTGCACTATTGCATCGACAAAGACAA < 41bp 1 0.245113446386079 1 0.0466794669628143 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYK ENSG00000165025 CDS Human protein_coding chr9:93624554 chr9:93624558 nonsynonymous SNV 0.968 5 25 hm5C_associated_SNPs_36105 0 0 0 1 2 SYK chr9:93624626 5'GT 93624626 Upstream 69bp
chr1 10231363 10231363 1 + C T SKCM 10231351 + 10231331 10231371 41 GATATTTACTTACAGCTGGACTGTGCTCGGTTCGCGAAAGC GATATTTACTTACAGCTGGACTGTGCTCGGTTTGCGAAAGC < 41bp 1 0.227088368555235 1 0.105401813983917 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10231351 chr1:10231363 synonymous SNV . 0 33 hm5C_associated_SNPs_36106 0 0 1 0 1 UBE4B chr1:10231387 5'GT 10231387 Upstream 25bp
chr1 79128395 79128395 1 + G A SKCM 79128401 + 79128381 79128421 41 TATTGCAGCTAGAGGAAGTCCAAAGAAAACTTGGATTTGCT TATTGCAGCTAGAGAAAGTCCAAAGAAAACTTGGATTTGCT < 41bp 1 0.353813199143749 1 0.401466280221939 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IFI44 ENSG00000137965 CDS Human protein_coding chr1:79128401 chr1:79128395 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_36107 0 0 0 0 1 IFI44 chr1:79128389 3'AG 79128389 Downstream 7bp
chr16 55523612 55523612 1 + C T SKCM 55523610 + 55523590 55523630 41 AAGGTGCCCCCTGTGTCTTCCCCTTCACTTTCCTGGGCAAC AAGGTGCCCCCTGTGTCTTCCCTTTCACTTTCCTGGGCAAC < 41bp 1 0.0122568404273436 1 0.0844337344169617 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP2 ENSG00000087245 CDS Human protein_coding chr16:55523610 chr16:55523612 synonymous SNV . 0 23 hm5C_associated_SNPs_36108 0 0 0 0 1 MMP2 chr16:55523563 3'AG 55523563 Downstream 50bp
chr1 44019227 44019227 1 + C T SKCM 44019220 + 44019200 44019240 41 TGGGCTGTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTA TGGGCTGTCAGGAGGGGTAGCCTCCTTTGTGTGCCAAGCTA < 41bp 1 0.0319929291089607 1 0.135940104722977 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44019220 chr1:44019227 synonymous SNV . 0 28 hm5C_associated_SNPs_36115 0 0 1 0 2 PTPRF chr1:44019163 3'AG 44019163 Downstream 65bp
chr1 44019227 44019227 1 + C T SKCM 44019220 + 44019200 44019240 41 TGGGCTGTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTA TGGGCTGTCAGGAGGGGTAGCCTCCTTTGTGTGCCAAGCTA < 41bp 1 0.0319929291089607 1 0.135940104722977 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44019220 chr1:44019227 synonymous SNV . 0 28 hm5C_associated_SNPs_36115 0 0 1 0 2 PTPRF chr1:44019308 5'GT 44019308 Upstream 82bp
chr1 44087626 44087626 1 + C T SKCM 44087609 + 44087589 44087629 41 GCCCCCTATCCTGGCAGGACCAGTATCAGCTGTGCTACCGT GCCCCCTATCCTGGCAGGACCAGTATCAGCTGTGCTATCGT < 41bp 1 0.313140152007546 1 0.318939030170441 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44087609 chr1:44087626 synonymous SNV . 0 38 hm5C_associated_SNPs_36116 0 0 1 0 1 PTPRF chr1:44087606 3'AG 44087606 Downstream 21bp
chrX 107868959 107868959 1 + C T SKCM 107868973 + 107868953 107868993 41 GTCTCCCTGGACAGCCAGGTCTTATAGGACCTCCTGGACTT GTCTCCTTGGACAGCCAGGTCTTATAGGACCTCCTGGACTT < 41bp 1 0.165215417299077 1 0.0386524498462677 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107868973 chrX:107868959 nonsynonymous SNV 0.998 4 7 hm5C_associated_SNPs_36117 0 0 0 0 2 COL4A5 chrX:107868935 3'AG 107868935 Downstream 25bp
chrX 107868959 107868959 1 + C T SKCM 107868973 + 107868953 107868993 41 GTCTCCCTGGACAGCCAGGTCTTATAGGACCTCCTGGACTT GTCTCCTTGGACAGCCAGGTCTTATAGGACCTCCTGGACTT < 41bp 1 0.165215417299077 1 0.0386524498462677 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107868973 chrX:107868959 nonsynonymous SNV 0.998 4 7 hm5C_associated_SNPs_36117 0 0 0 0 2 COL4A5 chrX:107869024 5'GT 107869024 Upstream 66bp
chr12 57597283 57597283 1 + G A SKCM 57597276 + 57597256 57597296 41 GACGCCGACTGCATGGACGGCAGCGACGAGGAGGCCTGCGG GACGCCGACTGCATGGACGGCAGCGACAAGGAGGCCTGCGG < 41bp 1 0.20264922474338 1 0.326977103948593 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57597276 chr12:57597283 nonsynonymous SNV 1.000 5 28 hm5C_associated_SNPs_36118 0 0 1 0 1 LRP1 chr12:57597304 5'GT 57597304 Upstream 22bp
chr12 124239059 124239059 1 + C T SKCM 124239064 + 124239044 124239084 41 CTCCTACCTGAGGCTCTGGGCGCTTAGCCTGGCTCACGCAC CTCCTACCTGAGGCTTTGGGCGCTTAGCCTGGCTCACGCAC < 41bp 1 0.289347452606172 1 0.243267148733139 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124239064 chr12:124239059 synonymous SNV . 0 16 hm5C_associated_SNPs_36120 0 0 1 0 2 ATP6V0A2 chr12:124238967 3'AG 124238967 Downstream 93bp
chr12 124239059 124239059 1 + C T SKCM 124239064 + 124239044 124239084 41 CTCCTACCTGAGGCTCTGGGCGCTTAGCCTGGCTCACGCAC CTCCTACCTGAGGCTTTGGGCGCTTAGCCTGGCTCACGCAC < 41bp 1 0.289347452606172 1 0.243267148733139 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124239064 chr12:124239059 synonymous SNV . 0 16 hm5C_associated_SNPs_36120 0 0 1 0 2 ATP6V0A2 chr12:124239084 5'GT 124239084 Upstream 26bp
chr19 41040073 41040073 1 + G A SKCM 41040069 + 41040049 41040089 41 CGAGATCCGCCAGTGCTGGGCGGAGCTGGAGAGCACCACCC CGAGATCCGCCAGTGCTGGGCGGAACTGGAGAGCACCACCC < 41bp 1 0.589416351834165 1 0.673960328102112 experiment 0.821167296331669 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41040069 chr19:41040073 synonymous SNV . 0 25 hm5C_associated_SNPs_36121 0 0 0 0 1 SPTBN4 chr19:41039987 3'AG 41039987 Downstream 87bp
chr22 39125543 39125543 1 + C T SKCM 39125541 + 39125521 39125561 41 ATGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGA ATGCAGTCGACGAAAAAGGGCCTCCTGACGAAACGAGACGA < 41bp 1 0.0155222777855464 1 0.125802218914032 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125541 chr22:39125543 nonsynonymous SNV 0.658 2 23 hm5C_associated_SNPs_36122 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 77bp
chr22 39125543 39125543 1 + C T SKCM 39125542 + 39125522 39125562 41 TGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAG TGCAGTCGACGAAAAAGGGCCTCCTGACGAAACGAGACGAG < 41bp 1 0.155851247686304 1 0.454247385263443 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125542 chr22:39125543 nonsynonymous SNV 0.658 2 22 hm5C_associated_SNPs_36123 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 77bp
chr22 39125543 39125543 1 + C T SKCM 39125544 + 39125524 39125564 41 CAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGG CAGTCGACGAAAAAGGGCCTCCTGACGAAACGAGACGAGGG < 41bp 1 0.113942113505898 1 0.210402250289917 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125544 chr22:39125543 nonsynonymous SNV 0.658 2 20 hm5C_associated_SNPs_36124 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 77bp
chr22 39125543 39125543 1 + C T SKCM 39125545 + 39125525 39125565 41 AGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGGG AGTCGACGAAAAAGGGCCTCCTGACGAAACGAGACGAGGGG < 41bp 1 0.155812327186124 1 0.380479633808136 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125545 chr22:39125543 nonsynonymous SNV 0.658 2 19 hm5C_associated_SNPs_36125 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 77bp
chr2 233704569 233704569 1 + C T SKCM 233704582 + 233704562 233704602 41 CCTTCTTCTTCAACGTGGGGCCAGCAGTCCAATACAACAGC CCTTCTTTTTCAACGTGGGGCCAGCAGTCCAATACAACAGC < 41bp 1 0.0624961639178427 1 0.26029908657074 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233704582 chr2:233704569 nonsynonymous SNV 0.998 3 8 hm5C_associated_SNPs_36127 0 0 1 0 1 GIGYF2 chr2:233704559 3'AG 233704559 Downstream 11bp
chr2 233704569 233704569 1 + C T SKCM 233704586 + 233704566 233704606 41 CTTCTTCAACGTGGGGCCAGCAGTCCAATACAACAGCATGT CTTTTTCAACGTGGGGCCAGCAGTCCAATACAACAGCATGT < 41bp 1 0.103963295383585 1 0.592305123806 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233704586 chr2:233704569 nonsynonymous SNV 0.998 3 4 hm5C_associated_SNPs_36128 0 0 1 0 1 GIGYF2 chr2:233704559 3'AG 233704559 Downstream 11bp
chr1 32042974 32042974 1 + C T SKCM 32042959 + 32042939 32042979 41 CTGCCCTACCTGGGCGCCATCTGTTACTGTGACCTCTTCTG CTGCCCTACCTGGGCGCCATCTGTTACTGTGACCTTTTCTG < 41bp 1 0.337030232124303 1 0.164899468421936 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32042959 chr1:32042974 synonymous SNV . 0 36 hm5C_associated_SNPs_36129 0 0 0 0 1 TINAGL1 chr1:32043059 5'GT 32043059 Upstream 86bp
chr1 228526038 228526038 1 + G A SKCM 228526019 + 228525999 228526039 41 TGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGG TGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAAG < 41bp 1 0.064061309337787 1 0.182869106531143 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526019 chr1:228526038 synonymous SNV . 0 40 hm5C_associated_SNPs_36130 0 0 1 0 2 OBSCN chr1:228525991 3'AG 228525991 Downstream 48bp
chr1 228526038 228526038 1 + G A SKCM 228526019 + 228525999 228526039 41 TGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGG TGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAAG < 41bp 1 0.064061309337787 1 0.182869106531143 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526019 chr1:228526038 synonymous SNV . 0 40 hm5C_associated_SNPs_36130 0 0 1 0 2 OBSCN chr1:228526073 5'GT 228526073 Upstream 36bp
chr1 228526038 228526038 1 + G A SKCM 228526020 + 228526000 228526040 41 GAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGC GAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAAGC < 41bp 1 0.0785709404029132 1 0.123235702514648 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526020 chr1:228526038 synonymous SNV . 0 39 hm5C_associated_SNPs_36131 0 0 1 0 2 OBSCN chr1:228525991 3'AG 228525991 Downstream 48bp
chr1 228526038 228526038 1 + G A SKCM 228526020 + 228526000 228526040 41 GAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGC GAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAAGC < 41bp 1 0.0785709404029132 1 0.123235702514648 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526020 chr1:228526038 synonymous SNV . 0 39 hm5C_associated_SNPs_36131 0 0 1 0 2 OBSCN chr1:228526073 5'GT 228526073 Upstream 36bp
chr1 228526038 228526038 1 + G A SKCM 228526021 + 228526001 228526041 41 AGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGCT AGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAAGCT < 41bp 1 0.102295415727513 1 0.241210162639618 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526021 chr1:228526038 synonymous SNV . 0 38 hm5C_associated_SNPs_36132 0 0 1 0 2 OBSCN chr1:228525991 3'AG 228525991 Downstream 48bp
chr1 228526038 228526038 1 + G A SKCM 228526021 + 228526001 228526041 41 AGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGCT AGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAAGCT < 41bp 1 0.102295415727513 1 0.241210162639618 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526021 chr1:228526038 synonymous SNV . 0 38 hm5C_associated_SNPs_36132 0 0 1 0 2 OBSCN chr1:228526073 5'GT 228526073 Upstream 36bp
chr1 228526038 228526038 1 + G A SKCM 228526022 + 228526002 228526042 41 GTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGCTG GTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAAGCTG < 41bp 1 0.183197264051767 1 0.294770658016205 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526022 chr1:228526038 synonymous SNV . 0 37 hm5C_associated_SNPs_36133 0 0 1 0 2 OBSCN chr1:228525991 3'AG 228525991 Downstream 48bp
chr1 228526038 228526038 1 + G A SKCM 228526022 + 228526002 228526042 41 GTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGCTG GTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAAGCTG < 41bp 1 0.183197264051767 1 0.294770658016205 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526022 chr1:228526038 synonymous SNV . 0 37 hm5C_associated_SNPs_36133 0 0 1 0 2 OBSCN chr1:228526073 5'GT 228526073 Upstream 36bp
chr15 22945069 22945069 1 + C T SKCM 22945057 + 22945037 22945077 41 CAGGTGGTCACGGGCTCGGGCCGCCAGGAGGCCCAGAAGAC CAGGTGGTCACGGGCTCGGGCCGCCAGGAGGCTCAGAAGAC < 41bp 1 0.163085043553559 1 0.200193464756012 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22945057 chr15:22945069 synonymous SNV . 0 33 hm5C_associated_SNPs_36134 0 0 1 0 2 CYFIP1 chr15:22945040 3'AG 22945040 Downstream 30bp
chr15 22945069 22945069 1 + C T SKCM 22945057 + 22945037 22945077 41 CAGGTGGTCACGGGCTCGGGCCGCCAGGAGGCCCAGAAGAC CAGGTGGTCACGGGCTCGGGCCGCCAGGAGGCTCAGAAGAC < 41bp 1 0.163085043553559 1 0.200193464756012 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22945057 chr15:22945069 synonymous SNV . 0 33 hm5C_associated_SNPs_36134 0 0 1 0 2 CYFIP1 chr15:22945162 5'GT 22945162 Upstream 94bp
chr11 45923603 45923603 1 + C T SKCM 45923602 + 45923582 45923622 41 GTGTCTCGATCATCCTCACCCCTGAAGACAGGTAAGTCAGG GTGTCTCGATCATCCTCACCCTTGAAGACAGGTAAGTCAGG < 41bp 1 0.28860039275633 1 0.441153675317764 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923602 chr11:45923603 synonymous SNV . 0 22 hm5C_associated_SNPs_36135 0 0 0 0 2 MAPK8IP1 chr11:45923531 3'AG 45923531 Downstream 73bp
chr11 45923603 45923603 1 + C T SKCM 45923602 + 45923582 45923622 41 GTGTCTCGATCATCCTCACCCCTGAAGACAGGTAAGTCAGG GTGTCTCGATCATCCTCACCCTTGAAGACAGGTAAGTCAGG < 41bp 1 0.28860039275633 1 0.441153675317764 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923602 chr11:45923603 synonymous SNV . 0 22 hm5C_associated_SNPs_36135 0 0 0 0 2 MAPK8IP1 chr11:45923612 5'GT 45923612 Upstream 10bp
chr20 42680109 42680109 1 + C T SKCM 42680122 + 42680102 42680142 41 TCCCCATCACCGCCGGGGAGCAAGTCAGCGACCCCCTCTCC TCCCCATTACCGCCGGGGAGCAAGTCAGCGACCCCCTCTCC < 41bp 1 0.486564246289322 1 0.212034523487091 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42680122 chr20:42680109 nonsynonymous SNV 0.800 3 8 hm5C_associated_SNPs_36138 0 0 0 0 1 TOX2 chr20:42680185 5'GT 42680185 Upstream 77bp
chr9 137593095 137593095 1 + C T SKCM 137593086 + 137593066 137593106 41 CTCGACTGTAAAAAGAAGACCACCAAATTCCTCGACCGCAG CTCGACTGTAAAAAGAAGACCACCAAATTTCTCGACCGCAG < 41bp 1 0.298169037257962 1 0.180352836847305 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137593086 chr9:137593095 synonymous SNV . 0 30 hm5C_associated_SNPs_36139 0 0 1 0 2 COL5A1 chr9:137593017 3'AG 137593017 Downstream 79bp
chr9 137593095 137593095 1 + C T SKCM 137593086 + 137593066 137593106 41 CTCGACTGTAAAAAGAAGACCACCAAATTCCTCGACCGCAG CTCGACTGTAAAAAGAAGACCACCAAATTTCTCGACCGCAG < 41bp 1 0.298169037257962 1 0.180352836847305 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137593086 chr9:137593095 synonymous SNV . 0 30 hm5C_associated_SNPs_36139 0 0 1 0 2 COL5A1 chr9:137593179 5'GT 137593179 Upstream 85bp
chr18 33785177 33785177 1 + C T SKCM 33785182 + 33785162 33785202 41 AGCAGCCCTGAGGTTCAGGGCCCAATCATCAATTTTAATGT AGCAGCCCTGAGGTTTAGGGCCCAATCATCAATTTTAATGT < 41bp 1 0.242342976579347 1 0.0623973906040192 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33785182 chr18:33785177 stopgain 0.158 1 16 hm5C_associated_SNPs_36142 0 0 0 0 1 MOCOS chr18:33785239 5'GT 33785239 Upstream 63bp
chr18 33785177 33785177 1 + C T SKCM 33785183 + 33785163 33785203 41 GCAGCCCTGAGGTTCAGGGCCCAATCATCAATTTTAATGTG GCAGCCCTGAGGTTTAGGGCCCAATCATCAATTTTAATGTG < 41bp 1 0.0540136580859662 1 0.0235882699489594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33785183 chr18:33785177 stopgain 0.158 1 15 hm5C_associated_SNPs_36143 0 0 0 0 1 MOCOS chr18:33785239 5'GT 33785239 Upstream 63bp
chr18 33785177 33785177 1 + C T SKCM 33785184 + 33785164 33785204 41 CAGCCCTGAGGTTCAGGGCCCAATCATCAATTTTAATGTGC CAGCCCTGAGGTTTAGGGCCCAATCATCAATTTTAATGTGC < 41bp 1 0.0376588251847132 1 0.0393129289150238 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33785184 chr18:33785177 stopgain 0.158 1 14 hm5C_associated_SNPs_36144 0 0 0 0 1 MOCOS chr18:33785239 5'GT 33785239 Upstream 63bp
chr10 122664263 122664263 1 + C T SKCM 122664258 + 122664238 122664278 41 AGTCACTACTGTCACCTCGTCAGGCCCCTCTCAGAGCACCA AGTCACTACTGTCACCTCGTCAGGCTCCTCTCAGAGCACCA < 41bp 1 0.414708628955992 1 0.76829469203949 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122664258 chr10:122664263 nonsynonymous SNV 0.997 3 26 hm5C_associated_SNPs_36145 0 0 1 0 1 WDR11 chr10:122664323 5'GT 122664323 Upstream 61bp
chr4 126398344 126398344 1 + G A SKCM 126398352 + 126398332 126398372 41 AGAGTTACAGTTGGAGGTATCAGATCTCTAGAACCAATCCT AGAGTTACAGTTAGAGGTATCAGATCTCTAGAACCAATCCT < 41bp 1 0.108967662237064 1 0.78072327375412 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126398352 chr4:126398344 nonsynonymous SNV 0.997 4 13 hm5C_associated_SNPs_36146 0 0 1 0 1 FAT4 chr4:126398310 3'AG 126398310 Downstream 35bp
chr10 26994270 26994270 1 + C T SKCM 26994265 + 26994245 26994285 41 ACACAGTGGTGAAAAATACACCGATCCTTTCAAACTCGGTT ACACAGTGGTGAAAAATACACCGATTCTTTCAAACTCGGTT < 41bp 1 0.295957770776366 1 0.0592259764671326 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDSS1 ENSG00000148459 CDS Human protein_coding chr10:26994265 chr10:26994270 nonsynonymous SNV 0.995 4 26 hm5C_associated_SNPs_36147 0 0 1 0 2 PDSS1 chr10:26994215 3'AG 26994215 Downstream 56bp
chr10 26994270 26994270 1 + C T SKCM 26994265 + 26994245 26994285 41 ACACAGTGGTGAAAAATACACCGATCCTTTCAAACTCGGTT ACACAGTGGTGAAAAATACACCGATTCTTTCAAACTCGGTT < 41bp 1 0.295957770776366 1 0.0592259764671326 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDSS1 ENSG00000148459 CDS Human protein_coding chr10:26994265 chr10:26994270 nonsynonymous SNV 0.995 4 26 hm5C_associated_SNPs_36147 0 0 1 0 2 PDSS1 chr10:26994323 5'GT 26994323 Upstream 54bp
chr6 15487565 15487565 1 + G A SKCM 15487577 + 15487557 15487597 41 GTCAACACGGGAGAAGGAACCTGTTCAAAAACACAAAAGCA GTCAACACAGGAGAAGGAACCTGTTCAAAAACACAAAAGCA < 41bp 1 0.085498335538913 1 0.52179342508316 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control JARID2 ENSG00000008083 CDS Human protein_coding chr6:15487577 chr6:15487565 nonsynonymous SNV 0.999 2 9 hm5C_associated_SNPs_36148 0 0 1 0 1 JARID2 chr6:15487538 3'AG 15487538 Downstream 28bp
chr22 40762483 40762483 1 + C T SKCM 40762482 + 40762462 40762502 41 AGGTGTATCCCCTGTTAAAACCATATGAAAGCGTGATGAAG AGGTGTATCCCCTGTTAAAACTATATGAAAGCGTGATGAAG < 41bp 1 0.623238695700251 1 0.273213624954224 experiment 0.753522608599497 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ADSL ENSG00000239900 CDS Human protein_coding chr22:40762482 chr22:40762483 nonsynonymous SNV 0.989 3 22 hm5C_associated_SNPs_36149 0 0 1 0 1 ADSL chr22:40762440 3'AG 40762440 Downstream 44bp
chr1 10479767 10479767 1 + C T SKCM 10479787 + 10479767 10479807 41 CCATGGTGGCACCGTGTCATCCTCGTCATACAATGCCTGAT TCATGGTGGCACCGTGTCATCCTCGTCATACAATGCCTGAT < 41bp 1 0.274254932904919 1 0.0946965515613556 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PGD ENSG00000142657 CDS Human protein_coding chr1:10479787 chr1:10479767 synonymous SNV . 0 1 hm5C_associated_SNPs_36150 0 0 1 0 1 PGD chr1:10479687 3'AG 10479687 Downstream 81bp
chr17 80193902 80193902 1 + G A SKCM 80193913 + 80193893 80193933 41 GGCCGTGGTGGACGAGGGCCCCACAGGCGTCAAGGCCCCTG GGCCGTGGTAGACGAGGGCCCCACAGGCGTCAAGGCCCCTG < 41bp 1 0.583740865817098 1 0.0865874290466309 experiment 0.832518268365804 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC16A3 ENSG00000141526 CDS Human protein_coding chr17:80193913 chr17:80193902 synonymous SNV . 0 10 hm5C_associated_SNPs_36151 0 0 1 0 1 SLC16A3 chr17:80193859 3'AG 80193859 Downstream 44bp
chr12 21205122 21205122 1 + G A SKCM 21205114 + 21205094 21205134 41 GATGAAAGTCAATGGGAACCCGTCTGTGGAAACAATGGAAT GATGAAAGTCAATGGGAACCCGTCTGTGAAAACAATGGAAT < 41bp 1 0.392740412031545 1 0.113608330488205 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21205114 chr12:21205122 nonsynonymous SNV 0.575 5 29 hm5C_associated_SNPs_36152 0 0 0 0 2 SLCO1B7 chr12:21205030 3'AG 21205030 Downstream 93bp
chr12 21205122 21205122 1 + G A SKCM 21205114 + 21205094 21205134 41 GATGAAAGTCAATGGGAACCCGTCTGTGGAAACAATGGAAT GATGAAAGTCAATGGGAACCCGTCTGTGAAAACAATGGAAT < 41bp 1 0.392740412031545 1 0.113608330488205 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21205114 chr12:21205122 nonsynonymous SNV 0.575 5 29 hm5C_associated_SNPs_36152 0 0 0 0 2 SLCO1B7 chr12:21205195 5'GT 21205195 Upstream 74bp
chrX 7171326 7171326 1 + C T SKCM 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGCATCAAGGCCGAACATCATCCTGGTGATGGTTGACGA < 41bp 1 0.275307793830864 1 0.039793998003006 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171326 nonsynonymous SNV 0.968 2 35 hm5C_associated_SNPs_36162 0 0 0 0 1 STS chrX:7171237 3'AG 7171237 Downstream 90bp
chr9 130569509 130569509 1 + C T SKCM 130569510 + 130569490 130569530 41 TGGCAGCTGTGTCTCCATGCCCCCCTACTTCCGCTTCCTGA TGGCAGCTGTGTCTCCATGTCCCCCTACTTCCGCTTCCTGA < 41bp 1 0.119916262015357 1 0.0589411854743958 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FPGS ENSG00000136877 CDS Human protein_coding chr9:130569510 chr9:130569509 nonsynonymous SNV 0.942 4 20 hm5C_associated_SNPs_36165 0 0 0 0 2 FPGS chr9:130569488 3'AG 130569488 Downstream 22bp
chr9 130569509 130569509 1 + C T SKCM 130569510 + 130569490 130569530 41 TGGCAGCTGTGTCTCCATGCCCCCCTACTTCCGCTTCCTGA TGGCAGCTGTGTCTCCATGTCCCCCTACTTCCGCTTCCTGA < 41bp 1 0.119916262015357 1 0.0589411854743958 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FPGS ENSG00000136877 CDS Human protein_coding chr9:130569510 chr9:130569509 nonsynonymous SNV 0.942 4 20 hm5C_associated_SNPs_36165 0 0 0 0 2 FPGS chr9:130569565 5'GT 130569565 Upstream 57bp
chr9 21859377 21859377 1 + C T SKCM 21859391 + 21859371 21859411 41 ACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCT ACCATATCTCAGATAGGGTCCACAGAATGGTCAGAAACCCT < 41bp 1 0.250738118303769 1 0.241316199302673 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTAP ENSG00000099810 CDS Human protein_coding chr9:21859391 chr9:21859377 nonsynonymous SNV 0.998 2 7 hm5C_associated_SNPs_36166 0 0 1 1 3 MTAP chr9:21859285 3'AG 21859285 Downstream 93bp
chr9 21859377 21859377 1 + C T SKCM 21859391 + 21859371 21859411 41 ACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCT ACCATATCTCAGATAGGGTCCACAGAATGGTCAGAAACCCT < 41bp 1 0.250738118303769 1 0.241316199302673 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTAP ENSG00000099810 CDS Human protein_coding chr9:21859391 chr9:21859377 nonsynonymous SNV 0.998 2 7 hm5C_associated_SNPs_36166 0 0 1 1 3 MTAP chr9:21859302 3'AG 21859302 Downstream 76bp
chr9 21859377 21859377 1 + C T SKCM 21859391 + 21859371 21859411 41 ACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCT ACCATATCTCAGATAGGGTCCACAGAATGGTCAGAAACCCT < 41bp 1 0.250738118303769 1 0.241316199302673 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTAP ENSG00000099810 CDS Human protein_coding chr9:21859391 chr9:21859377 nonsynonymous SNV 0.998 2 7 hm5C_associated_SNPs_36166 0 0 1 1 3 MTAP chr9:21859424 5'GT 21859424 Upstream 48bp
chr4 3101050 3101050 1 + C T SKCM 3101067 + 3101047 3101087 41 TTTCTGCTGTGCAGTGATGACGCAGAGTCAGATGTCAGGAT TTTTTGCTGTGCAGTGATGACGCAGAGTCAGATGTCAGGAT < 41bp 1 0.377925450272385 1 0.340752005577087 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3101067 chr4:3101050 synonymous SNV . 0 4 hm5C_associated_SNPs_36169 0 0 1 0 2 HTT chr4:3101001 3'AG 3101001 Downstream 50bp
chr4 3101050 3101050 1 + C T SKCM 3101067 + 3101047 3101087 41 TTTCTGCTGTGCAGTGATGACGCAGAGTCAGATGTCAGGAT TTTTTGCTGTGCAGTGATGACGCAGAGTCAGATGTCAGGAT < 41bp 1 0.377925450272385 1 0.340752005577087 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3101067 chr4:3101050 synonymous SNV . 0 4 hm5C_associated_SNPs_36169 0 0 1 0 2 HTT chr4:3101121 5'GT 3101121 Upstream 72bp
chr1 28861654 28861654 1 + C T SKCM 28861637 + 28861617 28861657 41 TGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGCCTCA TGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGCTTCA < 41bp 1 0.237660167702799 1 0.309491813182831 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28861637 chr1:28861654 synonymous SNV . 0 38 hm5C_associated_SNPs_36171 0 0 1 0 2 RCC1 chr1:28861562 3'AG 28861562 Downstream 93bp
chr1 28861654 28861654 1 + C T SKCM 28861637 + 28861617 28861657 41 TGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGCCTCA TGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGCTTCA < 41bp 1 0.237660167702799 1 0.309491813182831 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28861637 chr1:28861654 synonymous SNV . 0 38 hm5C_associated_SNPs_36171 0 0 1 0 2 RCC1 chr1:28861658 5'GT 28861658 Upstream 5bp
chr7 151791331 151791331 1 + C T SKCM 151791339 + 151791319 151791359 41 AGTGTCACAGTTCGGTATTTCTGTTATGGGTGCCTTTTTAC AGTGTCACAGTTTGGTATTTCTGTTATGGGTGCCTTTTTAC < 41bp 1 0.23764877257358 1 0.0421455800533295 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151791339 chr7:151791331 nonsynonymous SNV 0.998 4 13 hm5C_associated_SNPs_36172 0 0 1 0 1 GALNT11 chr7:151791275 3'AG 151791275 Downstream 57bp
chr7 45108060 45108060 1 + C T SKCM 45108058 + 45108038 45108078 41 TCAGCCCAGGACCCAGGGATCTCCCCCAGCCAGAGTCTGTG TCAGCCCAGGACCCAGGGATCTTCCCCAGCCAGAGTCTGTG < 41bp 1 0.0966577180113893 1 0.055746853351593 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45108058 chr7:45108060 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_36178 0 0 0 0 1 CCM2 chr7:45108042 3'AG 45108042 Downstream 19bp
chr5 50058997 50058997 1 + G A SKCM 50059003 + 50058983 50059023 41 TGAACTATGATGGGGAACTGCACAAGCACCCACAACTGGAA TGAACTATGATGGGAAACTGCACAAGCACCCACAACTGGAA < 41bp 1 0.692363783089497 1 0.175847321748734 experiment 0.615272433821007 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PARP8 ENSG00000151883 CDS Human protein_coding chr5:50059003 chr5:50058997 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_36179 0 0 1 0 2 PARP8 chr5:50058982 3'AG 50058982 Downstream 16bp
chr5 50058997 50058997 1 + G A SKCM 50059003 + 50058983 50059023 41 TGAACTATGATGGGGAACTGCACAAGCACCCACAACTGGAA TGAACTATGATGGGAAACTGCACAAGCACCCACAACTGGAA < 41bp 1 0.692363783089497 1 0.175847321748734 experiment 0.615272433821007 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PARP8 ENSG00000151883 CDS Human protein_coding chr5:50059003 chr5:50058997 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_36179 0 0 1 0 2 PARP8 chr5:50059076 5'GT 50059076 Upstream 80bp
chr19 14568910 14568910 1 + C T SKCM 14568926 + 14568906 14568946 41 GTGGCCCCAATGCCTGGGACCAGAGCTTCACTCTGGAGCTG GTGGTCCCAATGCCTGGGACCAGAGCTTCACTCTGGAGCTG < 41bp 1 0.490645256234461 1 0.519435286521912 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14568926 chr19:14568910 synonymous SNV . 0 5 hm5C_associated_SNPs_36180 0 0 1 0 1 PKN1 chr19:14568843 3'AG 14568843 Downstream 68bp
chr19 36216190 36216190 1 + C T SKCM 36216189 + 36216169 36216209 41 CTCACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCT CTCACCTCTGTGCCAGGGGGCTCCCCGATGGTGTGCTTGCT < 41bp 1 0.0386693613427052 1 0.0700080096721649 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216189 chr19:36216190 nonsynonymous SNV 0.837 4 22 hm5C_associated_SNPs_36184 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 70bp
chr19 36216190 36216190 1 + C T SKCM 36216189 + 36216169 36216209 41 CTCACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCT CTCACCTCTGTGCCAGGGGGCTCCCCGATGGTGTGCTTGCT < 41bp 1 0.0386693613427052 1 0.0700080096721649 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216189 chr19:36216190 nonsynonymous SNV 0.837 4 22 hm5C_associated_SNPs_36184 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 45bp
chr19 36216190 36216190 1 + C T SKCM 36216191 + 36216171 36216211 41 CACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGT CACCTCTGTGCCAGGGGGCTCCCCGATGGTGTGCTTGCTGT < 41bp 1 0.127279257467931 1 0.239529132843018 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216191 chr19:36216190 nonsynonymous SNV 0.837 4 20 hm5C_associated_SNPs_36185 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 70bp
chr19 36216190 36216190 1 + C T SKCM 36216191 + 36216171 36216211 41 CACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGT CACCTCTGTGCCAGGGGGCTCCCCGATGGTGTGCTTGCTGT < 41bp 1 0.127279257467931 1 0.239529132843018 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216191 chr19:36216190 nonsynonymous SNV 0.837 4 20 hm5C_associated_SNPs_36185 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 45bp
chr19 36216190 36216190 1 + C T SKCM 36216192 + 36216172 36216212 41 ACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTG ACCTCTGTGCCAGGGGGCTCCCCGATGGTGTGCTTGCTGTG < 41bp 1 0.454479563005172 1 0.491795510053635 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216192 chr19:36216190 nonsynonymous SNV 0.837 4 19 hm5C_associated_SNPs_36186 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 70bp
chr19 36216190 36216190 1 + C T SKCM 36216192 + 36216172 36216212 41 ACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTG ACCTCTGTGCCAGGGGGCTCCCCGATGGTGTGCTTGCTGTG < 41bp 1 0.454479563005172 1 0.491795510053635 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216192 chr19:36216190 nonsynonymous SNV 0.837 4 19 hm5C_associated_SNPs_36186 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 45bp
chr19 36216190 36216190 1 + C T SKCM 36216193 + 36216173 36216213 41 CCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTGT CCTCTGTGCCAGGGGGCTCCCCGATGGTGTGCTTGCTGTGT < 41bp 1 0.147531571028897 1 0.391293287277222 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216193 chr19:36216190 nonsynonymous SNV 0.837 4 18 hm5C_associated_SNPs_36187 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 70bp
chr19 36216190 36216190 1 + C T SKCM 36216193 + 36216173 36216213 41 CCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTGT CCTCTGTGCCAGGGGGCTCCCCGATGGTGTGCTTGCTGTGT < 41bp 1 0.147531571028897 1 0.391293287277222 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216193 chr19:36216190 nonsynonymous SNV 0.837 4 18 hm5C_associated_SNPs_36187 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 45bp
chr19 36216190 36216190 1 + C T SKCM 36216194 + 36216174 36216214 41 CTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTGTG CTCTGTGCCAGGGGGCTCCCCGATGGTGTGCTTGCTGTGTG < 41bp 1 0.349578251777119 1 0.837104976177216 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216194 chr19:36216190 nonsynonymous SNV 0.837 4 17 hm5C_associated_SNPs_36188 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 70bp
chr19 36216190 36216190 1 + C T SKCM 36216194 + 36216174 36216214 41 CTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTGTG CTCTGTGCCAGGGGGCTCCCCGATGGTGTGCTTGCTGTGTG < 41bp 1 0.349578251777119 1 0.837104976177216 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216194 chr19:36216190 nonsynonymous SNV 0.837 4 17 hm5C_associated_SNPs_36188 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 45bp
chr3 14905687 14905687 1 + G A SKCM 14905692 + 14905672 14905712 41 TCGGCAGCCCCCAAAGAGGACCTTACGTCGGATGAAGAGCA TCGGCAGCCCCCAAAAAGGACCTTACGTCGGATGAAGAGCA < 41bp 1 0.0254479071353063 1 0.0530491769313812 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FGD5 ENSG00000154783 CDS Human protein_coding chr3:14905692 chr3:14905687 nonsynonymous SNV 0.769 1 16 hm5C_associated_SNPs_36189 0 0 0 0 2 FGD5 chr3:14905635 3'AG 14905635 Downstream 53bp
chr3 14905687 14905687 1 + G A SKCM 14905692 + 14905672 14905712 41 TCGGCAGCCCCCAAAGAGGACCTTACGTCGGATGAAGAGCA TCGGCAGCCCCCAAAAAGGACCTTACGTCGGATGAAGAGCA < 41bp 1 0.0254479071353063 1 0.0530491769313812 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FGD5 ENSG00000154783 CDS Human protein_coding chr3:14905692 chr3:14905687 nonsynonymous SNV 0.769 1 16 hm5C_associated_SNPs_36189 0 0 0 0 2 FGD5 chr3:14905767 5'GT 14905767 Upstream 81bp
chr12 6943094 6943094 1 + C T SKCM 6943099 + 6943079 6943119 41 TCCCTGGCAGATGTCCTTCTCCTGGAGGGTGTGACCTTGAC TCCCTGGCAGATGTCTTTCTCCTGGAGGGTGTGACCTTGAC < 41bp 1 0.289883198492825 1 0.803734362125397 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control P3H3 ENSG00000110811 CDS Human protein_coding chr12:6943099 chr12:6943094 nonsynonymous SNV 0.259 1 16 hm5C_associated_SNPs_36190 0 0 1 0 1 P3H3 chr12:6943089 3'AG 6943089 Downstream 6bp
chr20 42695407 42695407 1 + G A SKCM 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCCCCAGCAGCTCGGAATCCTGCTCACCTGGCCCATCCAA < 41bp 1 0.471840630406378 1 0.187154740095139 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695407 nonsynonymous SNV 0.278 3 17 hm5C_associated_SNPs_36191 0 0 1 0 2 TOX2 chr20:42695370 3'AG 42695370 Downstream 38bp
chr20 42695407 42695407 1 + G A SKCM 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCCCCAGCAGCTCGGAATCCTGCTCACCTGGCCCATCCAA < 41bp 1 0.471840630406378 1 0.187154740095139 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695407 nonsynonymous SNV 0.278 3 17 hm5C_associated_SNPs_36191 0 0 1 0 2 TOX2 chr20:42695497 5'GT 42695497 Upstream 91bp
chrX 2632473 2632473 1 + C T SKCM 2632489 + 2632469 2632509 41 GTTTCGATTTATCCGATGCCCTTCCTGGTGAGTATCAACAT GTTTTGATTTATCCGATGCCCTTCCTGGTGAGTATCAACAT < 41bp 1 0.0864971344439408 1 0.0728123486042023 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD99 ENSG00000002586 CDS Human protein_coding chrX:2632489 chrX:2632473 synonymous SNV . 0 5 hm5C_associated_SNPs_36192 0 0 1 0 2 CD99 chrX:2632463 3'AG 2632463 Downstream 11bp
chrX 2632473 2632473 1 + C T SKCM 2632489 + 2632469 2632509 41 GTTTCGATTTATCCGATGCCCTTCCTGGTGAGTATCAACAT GTTTTGATTTATCCGATGCCCTTCCTGGTGAGTATCAACAT < 41bp 1 0.0864971344439408 1 0.0728123486042023 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD99 ENSG00000002586 CDS Human protein_coding chrX:2632489 chrX:2632473 synonymous SNV . 0 5 hm5C_associated_SNPs_36192 0 0 1 0 2 CD99 chrX:2632495 5'GT 2632495 Upstream 23bp
chr22 29695762 29695762 1 + C T SKCM 29695781 + 29695761 29695801 41 CCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG CTCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG < 41bp 1 0.413313785599767 1 0.224251925945282 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695781 chr22:29695762 nonsynonymous SNV 0.994 2 2 hm5C_associated_SNPs_36194 0 0 1 0 1 EWSR1 chr22:29695841 5'GT 29695841 Upstream 80bp
chr1 40424494 40424494 1 + C T SKCM 40424495 + 40424475 40424515 41 TGCCTGGGTCGCCTTATGCCCTGGTGAGTAGAATATGCCCC TGCCTGGGTCGCCTTATGCTCTGGTGAGTAGAATATGCCCC < 41bp 1 0.780497966519915 1 0.543394088745117 experiment 0.439004066960169 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40424495 chr1:40424494 nonsynonymous SNV 1.000 5 20 hm5C_associated_SNPs_36195 0 0 0 1 1 MFSD2A chr1:40424497 5'GT 40424497 Upstream 4bp
chr20 30898673 30898673 1 + C T SKCM 30898670 + 30898650 30898690 41 AATTCCAGGAAGAGATTGCTCGGCTCAAGGCCCAGCTGGAA AATTCCAGGAAGAGATTGCTCGGTTCAAGGCCCAGCTGGAA < 41bp 1 0.417471987075022 1 0.743875622749329 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898670 chr20:30898673 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_36196 0 0 1 0 1 KIF3B chr20:30898703 5'GT 30898703 Upstream 31bp
chr10 75674610 75674610 1 + G A SKCM 75674624 + 75674604 75674644 41 GCCCTCGATGTATAACGATCCCCAGTTTGGCACAAGCTGTG GCCCTCAATGTATAACGATCCCCAGTTTGGCACAAGCTGTG < 41bp 1 0.292577755512382 1 0.0879664421081543 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLAU ENSG00000122861 CDS Human protein_coding chr10:75674624 chr10:75674610 synonymous SNV . 0 7 hm5C_associated_SNPs_36197 0 0 0 0 2 PLAU chr10:75674534 3'AG 75674534 Downstream 77bp
chr10 75674610 75674610 1 + G A SKCM 75674624 + 75674604 75674644 41 GCCCTCGATGTATAACGATCCCCAGTTTGGCACAAGCTGTG GCCCTCAATGTATAACGATCCCCAGTTTGGCACAAGCTGTG < 41bp 1 0.292577755512382 1 0.0879664421081543 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLAU ENSG00000122861 CDS Human protein_coding chr10:75674624 chr10:75674610 synonymous SNV . 0 7 hm5C_associated_SNPs_36197 0 0 0 0 2 PLAU chr10:75674674 5'GT 75674674 Upstream 65bp
chr4 79440571 79440571 1 + C T SKCM 79440588 + 79440568 79440608 41 GGCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT GGCTTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT < 41bp 1 0.177127943850163 1 0.506680727005005 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440588 chr4:79440571 synonymous SNV . 0 4 hm5C_associated_SNPs_36198 0 0 0 0 2 FRAS1 chr4:79440485 3'AG 79440485 Downstream 87bp
chr4 79440571 79440571 1 + C T SKCM 79440588 + 79440568 79440608 41 GGCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT GGCTTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT < 41bp 1 0.177127943850163 1 0.506680727005005 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440588 chr4:79440571 synonymous SNV . 0 4 hm5C_associated_SNPs_36198 0 0 0 0 2 FRAS1 chr4:79440635 5'GT 79440635 Upstream 65bp
chr4 79440571 79440571 1 + C T SKCM 79440589 + 79440569 79440609 41 GCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT GCTTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT < 41bp 1 0.452142421865258 1 0.684167325496674 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440589 chr4:79440571 synonymous SNV . 0 3 hm5C_associated_SNPs_36199 0 0 0 0 2 FRAS1 chr4:79440485 3'AG 79440485 Downstream 87bp
chr4 79440571 79440571 1 + C T SKCM 79440589 + 79440569 79440609 41 GCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT GCTTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT < 41bp 1 0.452142421865258 1 0.684167325496674 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440589 chr4:79440571 synonymous SNV . 0 3 hm5C_associated_SNPs_36199 0 0 0 0 2 FRAS1 chr4:79440635 5'GT 79440635 Upstream 65bp
chr10 72326435 72326435 1 + G A SKCM 72326417 + 72326397 72326437 41 AGCGGGGAGGACCAGCCCTTCTCCAGGCTGCGCTACCGGTG AGCGGGGAGGACCAGCCCTTCTCCAGGCTGCGCTACCGATG < 41bp 1 0.778097746103121 1 0.885998368263245 experiment 0.443804507793758 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72326417 chr10:72326435 synonymous SNV . 0 39 hm5C_associated_SNPs_36200 0 0 0 0 1 PALD1 chr10:72326337 3'AG 72326337 Downstream 99bp
chr1 163042253 163042253 1 + C T SKCM 163042250 + 163042230 163042270 41 TGATTCCTGTGAACACAATTCTTCCCACAACAAGAAGGACA TGATTCCTGTGAACACAATTCTTTCCACAACAAGAAGGACA < 41bp 1 0.0484881923529829 1 0.141422688961029 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RGS4 ENSG00000117152 CDS Human protein_coding chr1:163042250 chr1:163042253 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_36206 0 0 0 0 2 RGS4 chr1:163042185 3'AG 163042185 Downstream 69bp
chr1 163042253 163042253 1 + C T SKCM 163042250 + 163042230 163042270 41 TGATTCCTGTGAACACAATTCTTCCCACAACAAGAAGGACA TGATTCCTGTGAACACAATTCTTTCCACAACAAGAAGGACA < 41bp 1 0.0484881923529829 1 0.141422688961029 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RGS4 ENSG00000117152 CDS Human protein_coding chr1:163042250 chr1:163042253 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_36206 0 0 0 0 2 RGS4 chr1:163042289 5'GT 163042289 Upstream 37bp
chr2 114670797 114670797 1 + C T SKCM 114670803 + 114670783 114670823 41 CCACAGTTTATCATCCCTTCCTGTAAGTATTTCTTTTAAGC CCACAGTTTATCATTCCTTCCTGTAAGTATTTCTTTTAAGC < 41bp 1 0.417682640777697 1 0.349373340606689 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACTR3 ENSG00000115091 CDS Human protein_coding chr2:114670803 chr2:114670797 nonsynonymous SNV . 0 15 hm5C_associated_SNPs_36207 0 0 1 0 2 ACTR3 chr2:114670749 3'AG 114670749 Downstream 49bp
chr2 114670797 114670797 1 + C T SKCM 114670803 + 114670783 114670823 41 CCACAGTTTATCATCCCTTCCTGTAAGTATTTCTTTTAAGC CCACAGTTTATCATTCCTTCCTGTAAGTATTTCTTTTAAGC < 41bp 1 0.417682640777697 1 0.349373340606689 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACTR3 ENSG00000115091 CDS Human protein_coding chr2:114670803 chr2:114670797 nonsynonymous SNV . 0 15 hm5C_associated_SNPs_36207 0 0 1 0 2 ACTR3 chr2:114670804 5'GT 114670804 Upstream 8bp
chr1 16199342 16199342 1 + C T SKCM 16199355 + 16199335 16199375 41 AATTCTTCCCAAGAGGGGATCTGAAGGAGGAGTGGCTGCCT AATTCTTTCCAAGAGGGGATCTGAAGGAGGAGTGGCTGCCT < 41bp 1 0.475960693291631 1 0.820903778076172 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16199355 chr1:16199342 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_36208 0 0 1 0 1 SPEN chr1:16199311 3'AG 16199311 Downstream 32bp
chr19 55823374 55823374 1 + C T SKCM 55823357 + 55823337 55823377 41 CCCACCCGGCCGCCCAGACCCAGAGCTGAGCAGCTCTCCCC CCCACCCGGCCGCCCAGACCCAGAGCTGAGCAGCTCTTCCC < 41bp 1 0.784914089692303 1 0.844070076942444 experiment 0.430171820615393 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55823357 chr19:55823374 nonsynonymous SNV 0.990 0 38 hm5C_associated_SNPs_36209 0 0 1 0 1 BRSK1 chr19:55823279 3'AG 55823279 Downstream 96bp
chr5 52177838 52177838 1 + G A SKCM 52177818 + 52177798 52177838 41 ATAGTCCAGAGAGGTGGCCGCCAGACTATGACAGCTCTTGG ATAGTCCAGAGAGGTGGCCGCCAGACTATGACAGCTCTTGA < 41bp 1 0.344375047134868 1 0.421135008335114 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA1 ENSG00000213949 CDS Human protein_coding chr5:52177818 chr5:52177838 nonsynonymous SNV 1.000 5 41 hm5C_associated_SNPs_36212 0 0 0 0 1 ITGA1 chr5:52177853 5'GT 52177853 Upstream 16bp
chr16 30081507 30081507 1 + C T SKCM 30081505 + 30081485 30081525 41 TGGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACG TGGGGCTGCTGCCAGCGAGTCCTTCTTCGTCTCTAACCACG < 41bp 1 0.0216589764884017 1 0.0258320868015289 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081505 chr16:30081507 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_36213 0 0 1 0 1 ALDOA chr16:30081438 3'AG 30081438 Downstream 70bp
chr16 30081507 30081507 1 + C T SKCM 30081506 + 30081486 30081526 41 GGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGC GGGGCTGCTGCCAGCGAGTCCTTCTTCGTCTCTAACCACGC < 41bp 1 0.146492686023279 1 0.0939122438430786 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081506 chr16:30081507 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_36214 0 0 1 0 1 ALDOA chr16:30081438 3'AG 30081438 Downstream 70bp
chr16 30081507 30081507 1 + C T SKCM 30081509 + 30081489 30081529 41 GCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGCCTA GCTGCTGCCAGCGAGTCCTTCTTCGTCTCTAACCACGCCTA < 41bp 1 0.452537142804078 1 0.152098834514618 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081509 chr16:30081507 nonsynonymous SNV 0.997 4 19 hm5C_associated_SNPs_36215 0 0 1 0 1 ALDOA chr16:30081438 3'AG 30081438 Downstream 70bp
chr19 19217149 19217149 1 + C T SKCM 19217131 + 19217111 19217151 41 CGCACTGGCTGGAACGACAGCCGCTTCACTGACCTACCCCC CGCACTGGCTGGAACGACAGCCGCTTCACTGACCTACCTCC < 41bp 1 0.205781411465307 1 0.15375080704689 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC25A42 ENSG00000181035 CDS Human protein_coding chr19:19217131 chr19:19217149 nonsynonymous SNV 0.994 5 39 hm5C_associated_SNPs_36219 0 0 1 0 2 SLC25A42 chr19:19217078 3'AG 19217078 Downstream 72bp
chr19 19217149 19217149 1 + C T SKCM 19217131 + 19217111 19217151 41 CGCACTGGCTGGAACGACAGCCGCTTCACTGACCTACCCCC CGCACTGGCTGGAACGACAGCCGCTTCACTGACCTACCTCC < 41bp 1 0.205781411465307 1 0.15375080704689 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC25A42 ENSG00000181035 CDS Human protein_coding chr19:19217131 chr19:19217149 nonsynonymous SNV 0.994 5 39 hm5C_associated_SNPs_36219 0 0 1 0 2 SLC25A42 chr19:19217194 5'GT 19217194 Upstream 46bp
chr10 122664264 122664264 1 + C T SKCM 122664258 + 122664238 122664278 41 AGTCACTACTGTCACCTCGTCAGGCCCCTCTCAGAGCACCA AGTCACTACTGTCACCTCGTCAGGCCTCTCTCAGAGCACCA < 41bp 1 0.395721348699443 1 0.693491816520691 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122664258 chr10:122664264 nonsynonymous SNV 0.995 4 27 hm5C_associated_SNPs_36220 0 0 1 0 1 WDR11 chr10:122664323 5'GT 122664323 Upstream 60bp
chr3 58118620 58118620 1 + G A SKCM 58118613 + 58118593 58118633 41 CACCCCATCTCAGGAGGGACCTTACATGGTCTCAGTTAAAT CACCCCATCTCAGGAGGGACCTTACATAGTCTCAGTTAAAT < 41bp 1 0.0149047752452821 1 0.190971434116364 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58118613 chr3:58118620 nonsynonymous SNV 0.998 1 28 hm5C_associated_SNPs_36221 0 0 0 0 2 FLNB chr3:58118535 3'AG 58118535 Downstream 86bp
chr3 58118620 58118620 1 + G A SKCM 58118613 + 58118593 58118633 41 CACCCCATCTCAGGAGGGACCTTACATGGTCTCAGTTAAAT CACCCCATCTCAGGAGGGACCTTACATAGTCTCAGTTAAAT < 41bp 1 0.0149047752452821 1 0.190971434116364 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58118613 chr3:58118620 nonsynonymous SNV 0.998 1 28 hm5C_associated_SNPs_36221 0 0 0 0 2 FLNB chr3:58118658 5'GT 58118658 Upstream 39bp
chr10 129231625 129231625 1 + C T SKCM 129231605 + 129231585 129231625 41 GTCCATGGTGCGGTCCTTCACGATGCCTTCCTCATCCCGCC GTCCATGGTGCGGTCCTTCACGATGCCTTCCTCATCCCGCT < 41bp 1 0.532920793911861 1 0.760922968387604 experiment 0.934158412176278 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129231605 chr10:129231625 nonsynonymous SNV 0.886 3 41 hm5C_associated_SNPs_36222 0 0 0 0 2 DOCK1 chr10:129231547 3'AG 129231547 Downstream 79bp
chr10 129231625 129231625 1 + C T SKCM 129231605 + 129231585 129231625 41 GTCCATGGTGCGGTCCTTCACGATGCCTTCCTCATCCCGCC GTCCATGGTGCGGTCCTTCACGATGCCTTCCTCATCCCGCT < 41bp 1 0.532920793911861 1 0.760922968387604 experiment 0.934158412176278 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129231605 chr10:129231625 nonsynonymous SNV 0.886 3 41 hm5C_associated_SNPs_36222 0 0 0 0 2 DOCK1 chr10:129231692 5'GT 129231692 Upstream 68bp
chr11 47256923 47256923 1 + C T SKCM 47256916 + 47256896 47256936 41 AGTGGGACTGCCCCCTGGGCCTGATCCCGCACCCTCACCGT AGTGGGACTGCCCCCTGGGCCTGATCCTGCACCCTCACCGT < 41bp 1 0.504069820399295 1 0.0571065247058868 experiment 0.991860359201409 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DDB2 ENSG00000134574 CDS Human protein_coding chr11:47256916 chr11:47256923 nonsynonymous SNV 0.380 0 28 hm5C_associated_SNPs_36225 0 0 1 0 1 DDB2 chr11:47256963 5'GT 47256963 Upstream 41bp
chr17 38318286 38318286 1 + G A SKCM 38318298 + 38318278 38318318 41 CAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATG CAAAGTGGATAAAAAGGGCCCTAAGCATTTGGATGATGATG < 41bp 1 0.157397820442399 1 0.0588571429252625 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318298 chr17:38318286 nonsynonymous SNV 0.995 1 9 hm5C_associated_SNPs_36226 0 0 1 0 1 CASC3 chr17:38318255 3'AG 38318255 Downstream 32bp
chr17 38318286 38318286 1 + G A SKCM 38318303 + 38318283 38318323 41 TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGAT TGGATAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGAT < 41bp 1 0.127986927711749 1 0.113242626190186 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318303 chr17:38318286 nonsynonymous SNV 0.995 1 4 hm5C_associated_SNPs_36227 0 0 1 0 1 CASC3 chr17:38318255 3'AG 38318255 Downstream 32bp
chr4 39757304 39757304 1 + C T SKCM 39757323 + 39757303 39757343 41 TCCTAATATTAGTTCCGTCACAGGGGCTATTTGTTTGGATA TTCTAATATTAGTTCCGTCACAGGGGCTATTTGTTTGGATA < 41bp 1 0.776269585694595 1 0.738714277744293 experiment 0.447460828610809 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBE2K ENSG00000078140 CDS Human protein_coding chr4:39757323 chr4:39757304 nonsynonymous SNV 0.999 4 2 hm5C_associated_SNPs_36228 0 0 1 0 2 UBE2K chr4:39757277 3'AG 39757277 Downstream 28bp
chr4 39757304 39757304 1 + C T SKCM 39757323 + 39757303 39757343 41 TCCTAATATTAGTTCCGTCACAGGGGCTATTTGTTTGGATA TTCTAATATTAGTTCCGTCACAGGGGCTATTTGTTTGGATA < 41bp 1 0.776269585694595 1 0.738714277744293 experiment 0.447460828610809 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBE2K ENSG00000078140 CDS Human protein_coding chr4:39757323 chr4:39757304 nonsynonymous SNV 0.999 4 2 hm5C_associated_SNPs_36228 0 0 1 0 2 UBE2K chr4:39757359 5'GT 39757359 Upstream 56bp
chr11 64802341 64802341 1 + C T SKCM 64802321 + 64802301 64802341 41 TTGTCCTGGGGGCCGTAGGCCGGTTTGAAGCCTCAGTGATC TTGTCCTGGGGGCCGTAGGCCGGTTTGAAGCCTCAGTGATT < 41bp 1 0.319874427588901 1 0.38874763250351 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802321 chr11:64802341 synonymous SNV . 0 41 hm5C_associated_SNPs_36229 0 0 1 0 2 SNX15 chr11:64802319 3'AG 64802319 Downstream 23bp
chr11 64802341 64802341 1 + C T SKCM 64802321 + 64802301 64802341 41 TTGTCCTGGGGGCCGTAGGCCGGTTTGAAGCCTCAGTGATC TTGTCCTGGGGGCCGTAGGCCGGTTTGAAGCCTCAGTGATT < 41bp 1 0.319874427588901 1 0.38874763250351 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802321 chr11:64802341 synonymous SNV . 0 41 hm5C_associated_SNPs_36229 0 0 1 0 2 SNX15 chr11:64802434 5'GT 64802434 Upstream 94bp
chr1 70700397 70700397 1 + G C SKCM 70700412 + 70700392 70700432 41 CACTGGCTGCTTTGGGGGCTCCTACTCTTGATCCTGCCCTT CACTGCCTGCTTTGGGGGCTCCTACTCTTGATCCTGCCCTT < 41bp 1 0.290356667736812 1 0.0855535864830017 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70700412 chr1:70700397 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_36230 0 0 1 0 2 SRSF11 chr1:70700379 3'AG 70700379 Downstream 19bp
chr1 70700397 70700397 1 + G C SKCM 70700412 + 70700392 70700432 41 CACTGGCTGCTTTGGGGGCTCCTACTCTTGATCCTGCCCTT CACTGCCTGCTTTGGGGGCTCCTACTCTTGATCCTGCCCTT < 41bp 1 0.290356667736812 1 0.0855535864830017 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70700412 chr1:70700397 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_36230 0 0 1 0 2 SRSF11 chr1:70700471 5'GT 70700471 Upstream 75bp
chr19 45850770 45850770 1 + G A SKCM 45850750 + 45850730 45850770 41 ACAGCCTGGCCTCCCTGTTCCCCAGCGAGGAGGAGGAGAGG ACAGCCTGGCCTCCCTGTTCCCCAGCGAGGAGGAGGAGAGA < 41bp 1 0.21254371618976 1 0.0538173913955688 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KLC3 ENSG00000104892 CDS Human protein_coding chr19:45850750 chr19:45850770 synonymous SNV . 0 41 hm5C_associated_SNPs_36231 0 0 0 0 3 KLC3 chr19:45850705 3'AG 45850705 Downstream 66bp
chr19 45850770 45850770 1 + G A SKCM 45850750 + 45850730 45850770 41 ACAGCCTGGCCTCCCTGTTCCCCAGCGAGGAGGAGGAGAGG ACAGCCTGGCCTCCCTGTTCCCCAGCGAGGAGGAGGAGAGA < 41bp 1 0.21254371618976 1 0.0538173913955688 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KLC3 ENSG00000104892 CDS Human protein_coding chr19:45850750 chr19:45850770 synonymous SNV . 0 41 hm5C_associated_SNPs_36231 0 0 0 0 3 KLC3 chr19:45850708 3'AG 45850708 Downstream 63bp
chr19 45850770 45850770 1 + G A SKCM 45850750 + 45850730 45850770 41 ACAGCCTGGCCTCCCTGTTCCCCAGCGAGGAGGAGGAGAGG ACAGCCTGGCCTCCCTGTTCCCCAGCGAGGAGGAGGAGAGA < 41bp 1 0.21254371618976 1 0.0538173913955688 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KLC3 ENSG00000104892 CDS Human protein_coding chr19:45850750 chr19:45850770 synonymous SNV . 0 41 hm5C_associated_SNPs_36231 0 0 0 0 3 KLC3 chr19:45850774 5'GT 45850774 Upstream 5bp
chr5 10415637 10415637 1 + G A SKCM 10415639 + 10415619 10415659 41 AATGTCGTTTTGGACGGGGACTGCCAAAATCCATGAGCTCT AATGTCGTTTTGGACGGGAACTGCCAAAATCCATGAGCTCT < 41bp 1 0.265429745084909 1 0.333441823720932 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10415639 chr5:10415637 synonymous SNV . 0 19 hm5C_associated_SNPs_36233 0 0 1 0 1 MARCH6 chr5:10415600 3'AG 10415600 Downstream 38bp
chr17 57738896 57738896 1 + C T SKCM 57738906 + 57738886 57738926 41 ACTTTGGTATCCTTTTGGACCAGGGACAGCTCAACAAATAC ACTTTGGTATTCTTTTGGACCAGGGACAGCTCAACAAATAC < 41bp 1 0.630439008832837 1 0.562865316867828 experiment 0.739121982334326 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57738906 chr17:57738896 synonymous SNV . 0 11 hm5C_associated_SNPs_36235 0 0 1 0 1 CLTC chr17:57738804 3'AG 57738804 Downstream 93bp
chr12 3389554 3389554 1 + G A SKCM 3389553 + 3389533 3389573 41 CCCTCCGCCTGGCAGGTGAACGAGAACGCCAAGAAGGACCT CCCTCCGCCTGGCAGGTGAACAAGAACGCCAAGAAGGACCT < 41bp 1 0.698039813336539 1 0.532885849475861 experiment 0.603920373326923 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSPAN9 ENSG00000011105 CDS Human protein_coding chr12:3389553 chr12:3389554 nonsynonymous SNV 0.975 2 22 hm5C_associated_SNPs_36238 0 0 1 0 2 TSPAN9 chr12:3389548 3'AG 3389548 Downstream 7bp
chr12 3389554 3389554 1 + G A SKCM 3389553 + 3389533 3389573 41 CCCTCCGCCTGGCAGGTGAACGAGAACGCCAAGAAGGACCT CCCTCCGCCTGGCAGGTGAACAAGAACGCCAAGAAGGACCT < 41bp 1 0.698039813336539 1 0.532885849475861 experiment 0.603920373326923 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSPAN9 ENSG00000011105 CDS Human protein_coding chr12:3389553 chr12:3389554 nonsynonymous SNV 0.975 2 22 hm5C_associated_SNPs_36238 0 0 1 0 2 TSPAN9 chr12:3389649 5'GT 3389649 Upstream 96bp
chr22 44332975 44332975 1 + G A SKCM 44332984 + 44332964 44333004 41 CATCCTCAGAAGGGATGGATCCTGAGGTCGCCATGCCCAGC CATCCTCAGAAAGGATGGATCCTGAGGTCGCCATGCCCAGC < 41bp 1 0.560304152980027 1 0.0986269116401672 experiment 0.879391694039946 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44332984 chr22:44332975 nonsynonymous SNV 0.001 0 12 hm5C_associated_SNPs_36239 0 0 1 0 1 PNPLA3 chr22:44332931 3'AG 44332931 Downstream 45bp
chr20 52835653 52835653 1 + C T SKCM 52835659 + 52835639 52835679 41 TTGTATGCAAAATTCGGGAGCAACATAAACCTTGAAGCTGA TTGTATGCAAAATTTGGGAGCAACATAAACCTTGAAGCTGA < 41bp 1 0.663917571790176 1 0.199393004179001 experiment 0.672164856419647 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PFDN4 ENSG00000101132 CDS Human protein_coding chr20:52835659 chr20:52835653 synonymous SNV . 0 15 hm5C_associated_SNPs_36241 0 0 1 0 1 PFDN4 chr20:52835558 3'AG 52835558 Downstream 96bp
chr6 7578094 7578094 1 + C T SKCM 7578111 + 7578091 7578131 41 AGTCCCCTTCTGGGGTGATTCTGCAAGAGGTATATATGTCA AGTTCCCTTCTGGGGTGATTCTGCAAGAGGTATATATGTCA < 41bp 1 0.669147653494491 1 0.938224673271179 experiment 0.661704693011018 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7578111 chr6:7578094 nonsynonymous SNV 0.606 5 4 hm5C_associated_SNPs_36242 0 0 1 0 2 DSP chr6:7578012 3'AG 7578012 Downstream 83bp
chr6 7578094 7578094 1 + C T SKCM 7578111 + 7578091 7578131 41 AGTCCCCTTCTGGGGTGATTCTGCAAGAGGTATATATGTCA AGTTCCCTTCTGGGGTGATTCTGCAAGAGGTATATATGTCA < 41bp 1 0.669147653494491 1 0.938224673271179 experiment 0.661704693011018 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7578111 chr6:7578094 nonsynonymous SNV 0.606 5 4 hm5C_associated_SNPs_36242 0 0 1 0 2 DSP chr6:7578119 5'GT 7578119 Upstream 26bp
chr1 214503535 214503535 1 + C T SKCM 214503545 + 214503525 214503565 41 TATTGATCTCCTGTACCCAACGGAAGATAGAAATGACCGGT TATTGATCTCTTGTACCCAACGGAAGATAGAAATGACCGGT < 41bp 1 0.659309837543225 1 0.52396160364151 experiment 0.681380324913551 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214503545 chr1:214503535 synonymous SNV . 0 11 hm5C_associated_SNPs_36243 0 0 1 0 2 SMYD2 chr1:214503511 3'AG 214503511 Downstream 25bp
chr1 214503535 214503535 1 + C T SKCM 214503545 + 214503525 214503565 41 TATTGATCTCCTGTACCCAACGGAAGATAGAAATGACCGGT TATTGATCTCTTGTACCCAACGGAAGATAGAAATGACCGGT < 41bp 1 0.659309837543225 1 0.52396160364151 experiment 0.681380324913551 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214503545 chr1:214503535 synonymous SNV . 0 11 hm5C_associated_SNPs_36243 0 0 1 0 2 SMYD2 chr1:214503621 5'GT 214503621 Upstream 87bp
chr12 56347547 56347547 1 + A T SKCM 56347561 + 56347541 56347581 41 TTCTTGAGCTAAGGGGGACACCCTTGGCCTCCAAGCCAGCC TTCTTGTGCTAAGGGGGACACCCTTGGCCTCCAAGCCAGCC < 41bp 1 0.206303712819537 1 0.0450488924980164 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56347561 chr12:56347547 nonsynonymous SNV 0.472 3 7 hm5C_associated_SNPs_36244 0 0 1 0 1 DGKA chr12:56347469 3'AG 56347469 Downstream 79bp
chr1 45270013 45270013 1 + G A SKCM 45270016 + 45269996 45270036 41 CCTCTCCCATGACAGCGGAACAGAACCCGGCCCCCCTGGCC CCTCTCCCATGACAGCGAAACAGAACCCGGCCCCCCTGGCC < 41bp 1 0.695496441320924 1 0.831506371498108 experiment 0.609007117358152 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45270016 chr1:45270013 nonsynonymous SNV 0.998 0 18 hm5C_associated_SNPs_36247 0 0 1 0 1 PLK3 chr1:45270011 3'AG 45270011 Downstream 3bp
chr7 128486908 128486908 1 + A C SKCM 128486898 + 128486878 128486918 41 GGTAGCTGCACCGTGGAGTACATCCCCTTCACTCCTGGAGA GGTAGCTGCACCGTGGAGTACATCCCCTTCCCTCCTGGAGA < 41bp 1 0.042495675962564 1 0.0516781806945801 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486898 chr7:128486908 nonsynonymous SNV 0.988 2 31 hm5C_associated_SNPs_36248 0 0 0 0 1 FLNC chr7:128486959 5'GT 128486959 Upstream 52bp
chr1 154962690 154962690 1 + C T SKCM 154962708 + 154962688 154962728 41 CCCCTTTCCCTGAGCTGGAACAGTTTCTACAGGACACTATC CCTCTTTCCCTGAGCTGGAACAGTTTCTACAGGACACTATC < 41bp 1 0.296001352038779 1 0.192055284976959 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962708 chr1:154962690 nonsynonymous SNV 0.986 1 3 hm5C_associated_SNPs_36252 0 0 1 0 2 FLAD1 chr1:154962635 3'AG 154962635 Downstream 56bp
chr1 154962690 154962690 1 + C T SKCM 154962708 + 154962688 154962728 41 CCCCTTTCCCTGAGCTGGAACAGTTTCTACAGGACACTATC CCTCTTTCCCTGAGCTGGAACAGTTTCTACAGGACACTATC < 41bp 1 0.296001352038779 1 0.192055284976959 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962708 chr1:154962690 nonsynonymous SNV 0.986 1 3 hm5C_associated_SNPs_36252 0 0 1 0 2 FLAD1 chr1:154962733 5'GT 154962733 Upstream 44bp
chr1 154962691 154962691 1 + C T SKCM 154962708 + 154962688 154962728 41 CCCCTTTCCCTGAGCTGGAACAGTTTCTACAGGACACTATC CCCTTTTCCCTGAGCTGGAACAGTTTCTACAGGACACTATC < 41bp 1 0.268854571801438 1 0.184926390647888 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962708 chr1:154962691 nonsynonymous SNV 0.988 2 4 hm5C_associated_SNPs_36253 0 0 1 0 2 FLAD1 chr1:154962635 3'AG 154962635 Downstream 57bp
chr1 154962691 154962691 1 + C T SKCM 154962708 + 154962688 154962728 41 CCCCTTTCCCTGAGCTGGAACAGTTTCTACAGGACACTATC CCCTTTTCCCTGAGCTGGAACAGTTTCTACAGGACACTATC < 41bp 1 0.268854571801438 1 0.184926390647888 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962708 chr1:154962691 nonsynonymous SNV 0.988 2 4 hm5C_associated_SNPs_36253 0 0 1 0 2 FLAD1 chr1:154962733 5'GT 154962733 Upstream 43bp
chr10 135197568 135197568 1 + C T SKCM 135197583 + 135197563 135197603 41 TCTTCCTGGAGTTTGAGGAGCCCTTCTGGGAGCCAGACTGC TCTTCTTGGAGTTTGAGGAGCCCTTCTGGGAGCCAGACTGC < 41bp 1 0.0639158788198692 1 0.0445739030838013 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PAOX ENSG00000148832 CDS Human protein_coding chr10:135197583 chr10:135197568 synonymous SNV . 0 6 hm5C_associated_SNPs_36254 0 0 0 1 1 PAOX chr10:135197474 3'AG 135197474 Downstream 95bp
chr19 13054393 13054393 1 + G A SKCM 13054404 + 13054384 13054424 41 ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA ATCACCAACAATGAGGCATACGCTGAGGAGTTTGGCAACGA < 41bp 1 0.564416448540365 1 0.139154613018036 experiment 0.87116710291927 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054404 chr19:13054393 nonsynonymous SNV 0.952 2 10 hm5C_associated_SNPs_36255 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 43bp
chr19 13054393 13054393 1 + G A SKCM 13054404 + 13054384 13054424 41 ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA ATCACCAACAATGAGGCATACGCTGAGGAGTTTGGCAACGA < 41bp 1 0.564416448540365 1 0.139154613018036 experiment 0.87116710291927 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054404 chr19:13054393 nonsynonymous SNV 0.952 2 10 hm5C_associated_SNPs_36255 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 51bp
chr19 13054393 13054393 1 + G A SKCM 13054406 + 13054386 13054426 41 CACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGAGA CACCAACAATGAGGCATACGCTGAGGAGTTTGGCAACGAGA < 41bp 1 0.691708780076702 1 0.24506202340126 experiment 0.616582439846597 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054406 chr19:13054393 nonsynonymous SNV 0.952 2 8 hm5C_associated_SNPs_36256 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 43bp
chr19 13054393 13054393 1 + G A SKCM 13054406 + 13054386 13054426 41 CACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGAGA CACCAACAATGAGGCATACGCTGAGGAGTTTGGCAACGAGA < 41bp 1 0.691708780076702 1 0.24506202340126 experiment 0.616582439846597 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054406 chr19:13054393 nonsynonymous SNV 0.952 2 8 hm5C_associated_SNPs_36256 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 51bp
chr7 142459821 142459821 1 + C T SKCM 142459802 + 142459782 142459822 41 AACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCC AACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTTC < 41bp 1 0.443990037386331 1 0.176809638738632 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459802 chr7:142459821 nonsynonymous SNV 0.000 2 40 hm5C_associated_SNPs_36257 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 58bp
chr7 142459821 142459821 1 + C T SKCM 142459804 + 142459784 142459824 41 CGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAG CGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTTCAG < 41bp 1 0.631081653788024 1 0.224206894636154 experiment 0.737836692423952 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459804 chr7:142459821 nonsynonymous SNV 0.000 2 38 hm5C_associated_SNPs_36258 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 58bp
chr7 142459821 142459821 1 + C T SKCM 142459806 + 142459786 142459826 41 CCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCC CCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTTCAGCC < 41bp 1 0.558091492924233 1 0.313506573438644 experiment 0.883817014151534 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459806 chr7:142459821 nonsynonymous SNV 0.000 2 36 hm5C_associated_SNPs_36259 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 58bp
chr7 142459821 142459821 1 + C T SKCM 142459809 + 142459789 142459829 41 GCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACT GCGTGTCCACCATCTCTCTGCCCACCGCCCCTTCAGCCACT < 41bp 1 0.160348446503121 1 0.0486319065093994 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459809 chr7:142459821 nonsynonymous SNV 0.000 2 33 hm5C_associated_SNPs_36260 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 58bp
chr7 142459821 142459821 1 + C T SKCM 142459810 + 142459790 142459830 41 CGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTG CGTGTCCACCATCTCTCTGCCCACCGCCCCTTCAGCCACTG < 41bp 1 0.220709192719187 1 0.0714983642101288 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459810 chr7:142459821 nonsynonymous SNV 0.000 2 32 hm5C_associated_SNPs_36261 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 58bp
chr7 142459821 142459821 1 + C T SKCM 142459811 + 142459791 142459831 41 GTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGG GTGTCCACCATCTCTCTGCCCACCGCCCCTTCAGCCACTGG < 41bp 1 0.619784005815891 1 0.0458442866802216 experiment 0.760431988368218 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459811 chr7:142459821 nonsynonymous SNV 0.000 2 31 hm5C_associated_SNPs_36262 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 58bp
chr7 142459821 142459821 1 + C T SKCM 142459813 + 142459793 142459833 41 GTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCA GTCCACCATCTCTCTGCCCACCGCCCCTTCAGCCACTGGCA < 41bp 1 0.287819549725987 1 0.0899697840213776 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459813 chr7:142459821 nonsynonymous SNV 0.000 2 29 hm5C_associated_SNPs_36263 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 58bp
chr7 142459821 142459821 1 + C T SKCM 142459814 + 142459794 142459834 41 TCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCAC TCCACCATCTCTCTGCCCACCGCCCCTTCAGCCACTGGCAC < 41bp 1 0.472013035269342 1 0.134108453989029 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459814 chr7:142459821 nonsynonymous SNV 0.000 2 28 hm5C_associated_SNPs_36264 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 58bp
chr7 142459821 142459821 1 + C T SKCM 142459816 + 142459796 142459836 41 CACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGA CACCATCTCTCTGCCCACCGCCCCTTCAGCCACTGGCACGA < 41bp 1 0.29825131016383 1 0.235761135816574 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459816 chr7:142459821 nonsynonymous SNV 0.000 2 26 hm5C_associated_SNPs_36265 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 58bp
chr7 142459821 142459821 1 + C T SKCM 142459817 + 142459797 142459837 41 ACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAA ACCATCTCTCTGCCCACCGCCCCTTCAGCCACTGGCACGAA < 41bp 1 0.150601957459431 1 0.197280466556549 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459817 chr7:142459821 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_36266 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 58bp
chr7 142459821 142459821 1 + C T SKCM 142459818 + 142459798 142459838 41 CCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAG CCATCTCTCTGCCCACCGCCCCTTCAGCCACTGGCACGAAG < 41bp 1 0.0641470818536548 1 0.158240377902985 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459818 chr7:142459821 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_36267 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 58bp
chr7 142459821 142459821 1 + C T SKCM 142459819 + 142459799 142459839 41 CATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGT CATCTCTCTGCCCACCGCCCCTTCAGCCACTGGCACGAAGT < 41bp 1 0.455730326431829 1 0.34131845831871 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459819 chr7:142459821 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_36268 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 58bp
chr7 142459821 142459821 1 + C T SKCM 142459822 + 142459802 142459842 41 CTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCC CTCTCTGCCCACCGCCCCTTCAGCCACTGGCACGAAGTGCC < 41bp 1 0.459110270552111 1 0.437750905752182 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459822 chr7:142459821 nonsynonymous SNV 0.000 2 20 hm5C_associated_SNPs_36269 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 58bp
chr7 142459821 142459821 1 + C T SKCM 142459825 + 142459805 142459845 41 TCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCA TCTGCCCACCGCCCCTTCAGCCACTGGCACGAAGTGCCTCA < 41bp 1 0.438646425332737 1 0.104626834392548 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459825 chr7:142459821 nonsynonymous SNV 0.000 2 17 hm5C_associated_SNPs_36270 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 58bp
chr7 142459821 142459821 1 + C T SKCM 142459826 + 142459806 142459846 41 CTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCAT CTGCCCACCGCCCCTTCAGCCACTGGCACGAAGTGCCTCAT < 41bp 1 0.686927688424662 1 0.148946642875671 experiment 0.626144623150676 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459826 chr7:142459821 nonsynonymous SNV 0.000 2 16 hm5C_associated_SNPs_36271 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 58bp
chr7 142459821 142459821 1 + C T SKCM 142459828 + 142459808 142459848 41 GCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCT GCCCACCGCCCCTTCAGCCACTGGCACGAAGTGCCTCATCT < 41bp 1 0.682194059996303 1 0.10391828417778 experiment 0.635611880007394 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459828 chr7:142459821 nonsynonymous SNV 0.000 2 14 hm5C_associated_SNPs_36272 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 58bp
chr7 142459821 142459821 1 + C T SKCM 142459834 + 142459814 142459854 41 CGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCTCTGGCT CGCCCCTTCAGCCACTGGCACGAAGTGCCTCATCTCTGGCT < 41bp 1 0.666012525604675 1 0.30675283074379 experiment 0.66797494879065 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459834 chr7:142459821 nonsynonymous SNV 0.000 2 8 hm5C_associated_SNPs_36273 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 58bp
chr7 142459821 142459821 1 + C T SKCM 142459841 + 142459821 142459861 41 CCAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAA TCAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAA < 41bp 1 0.384950899363136 1 0.0479970276355743 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459841 chr7:142459821 nonsynonymous SNV 0.000 2 1 hm5C_associated_SNPs_36274 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 58bp
chr12 120875933 120875933 1 + G A SKCM 120875925 + 120875905 120875945 41 GGCGCTGCGGCAGTCCAGATCAAAAATGGCGGTAGTTGGTG GGCGCTGCGGCAGTCCAGATCAAAAATGACGGTAGTTGGTG < 41bp 1 0.680134753521409 1 0.367364883422852 experiment 0.639730492957183 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COX6A1 ENSG00000111775 CDS Human other chr12:120875925 chr12:120875933 nonsynonymous SNV 0.142 1 29 hm5C_associated_SNPs_36275 0 0 1 0 1 COX6A1 chr12:120876032 5'GT 120876032 Upstream 100bp
chr18 48604711 48604711 1 + G A SKCM 48604710 + 48604690 48604730 41 TTTTGTGAAAGGCTGGGGACCGGATTACCCAAGACAGAGCA TTTTGTGAAAGGCTGGGGACCAGATTACCCAAGACAGAGCA < 41bp 1 0.413381793688056 1 0.594128489494324 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48604710 chr18:48604711 synonymous SNV . 0 22 hm5C_associated_SNPs_36277 1 0 1 0 1 SMAD4 chr18:48604626 3'AG 48604626 Downstream 86bp
chr4 74308046 74308046 1 + C T SKCM 74308041 + 74308021 74308061 41 ATGAGATAGCAAGAAGGCATCCCTTCCTGTATGCACCTACA ATGAGATAGCAAGAAGGCATCCCTTTCTGTATGCACCTACA < 41bp 1 0.0910663393327111 1 0.0345560908317566 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AFP ENSG00000081051 CDS Human protein_coding chr4:74308041 chr4:74308046 synonymous SNV . 0 26 hm5C_associated_SNPs_36278 0 0 1 0 2 AFP chr4:74308013 3'AG 74308013 Downstream 34bp
chr4 74308046 74308046 1 + C T SKCM 74308041 + 74308021 74308061 41 ATGAGATAGCAAGAAGGCATCCCTTCCTGTATGCACCTACA ATGAGATAGCAAGAAGGCATCCCTTTCTGTATGCACCTACA < 41bp 1 0.0910663393327111 1 0.0345560908317566 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AFP ENSG00000081051 CDS Human protein_coding chr4:74308041 chr4:74308046 synonymous SNV . 0 26 hm5C_associated_SNPs_36278 0 0 1 0 2 AFP chr4:74308145 5'GT 74308145 Upstream 100bp
chr19 3533324 3533324 1 + C T SKCM 3533341 + 3533321 3533361 41 GATCCTTGTCTGGAAGTACCCCTCCCTGACCCAGGTGGCCA GATTCTTGTCTGGAAGTACCCCTCCCTGACCCAGGTGGCCA < 41bp 1 0.105933351206732 1 0.103861570358276 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3533341 chr19:3533324 synonymous SNV . 0 4 hm5C_associated_SNPs_36282 0 0 0 0 2 FZR1 chr19:3533292 3'AG 3533292 Downstream 33bp
chr19 3533324 3533324 1 + C T SKCM 3533341 + 3533321 3533361 41 GATCCTTGTCTGGAAGTACCCCTCCCTGACCCAGGTGGCCA GATTCTTGTCTGGAAGTACCCCTCCCTGACCCAGGTGGCCA < 41bp 1 0.105933351206732 1 0.103861570358276 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3533341 chr19:3533324 synonymous SNV . 0 4 hm5C_associated_SNPs_36282 0 0 0 0 2 FZR1 chr19:3533396 5'GT 3533396 Upstream 73bp
chr12 111744791 111744791 1 + G A SKCM 111744777 + 111744757 111744797 41 TCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCC TCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGAAGATCC < 41bp 1 0.0284552970143037 1 0.119022130966187 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744777 chr12:111744791 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_36283 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 67bp
chr12 111744791 111744791 1 + G A SKCM 111744778 + 111744758 111744798 41 CGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCT CGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGAAGATCCT < 41bp 1 0.528828440138247 1 0.967212557792664 experiment 0.942343119723505 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744778 chr12:111744791 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_36284 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 67bp
chr12 111744791 111744791 1 + G A SKCM 111744780 + 111744760 111744800 41 GCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGC GCTGGAGGCCGCGCTGGCCTCCAAGGACAGGAAGATCCTGC < 41bp 1 0.260143162396695 1 0.859387755393982 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744780 chr12:111744791 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_36285 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 67bp
chr12 111744791 111744791 1 + G A SKCM 111744781 + 111744761 111744801 41 CTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGCG CTGGAGGCCGCGCTGGCCTCCAAGGACAGGAAGATCCTGCG < 41bp 1 0.430951504519736 1 0.859971642494202 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744781 chr12:111744791 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_36286 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 67bp
chr9 135942496 135942496 1 + C T SKCM 135942479 + 135942459 135942499 41 TTGGTTCTGCCCCCAGGTGGCTGAGAAGGTGGGTTGCCCTG TTGGTTCTGCCCCCAGGTGGCTGAGAAGGTGGGTTGCTCTG < 41bp 1 0.501123854824725 1 0.25641193985939 experiment 0.997752290350549 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942479 chr9:135942496 nonsynonymous SNV 0.827 3 38 hm5C_associated_SNPs_36288 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 22bp
chr9 135942496 135942496 1 + C T SKCM 135942495 + 135942475 135942515 41 GTGGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAG GTGGCTGAGAAGGTGGGTTGCTCTGTGGGTGATGCCGCCAG < 41bp 1 0.541076982163108 1 0.158334314823151 experiment 0.917846035673784 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942495 chr9:135942496 nonsynonymous SNV 0.827 3 22 hm5C_associated_SNPs_36289 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 22bp
chr9 135942496 135942496 1 + C T SKCM 135942497 + 135942477 135942517 41 GGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGGA GGCTGAGAAGGTGGGTTGCTCTGTGGGTGATGCCGCCAGGA < 41bp 1 0.6420364348329 1 0.773226737976074 experiment 0.7159271303342 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942497 chr9:135942496 nonsynonymous SNV 0.827 3 20 hm5C_associated_SNPs_36290 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 22bp
chr9 135942496 135942496 1 + C T SKCM 135942509 + 135942489 135942529 41 GGGTTGCCCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTC GGGTTGCTCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTC < 41bp 1 0.217715709552264 1 0.225816667079926 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942509 chr9:135942496 nonsynonymous SNV 0.827 3 8 hm5C_associated_SNPs_36291 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 22bp
chr9 135942496 135942496 1 + C T SKCM 135942512 + 135942492 135942532 41 TTGCCCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTCTGA TTGCTCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTCTGA < 41bp 1 0.44247893694961 1 0.74531763792038 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942512 chr9:135942496 nonsynonymous SNV 0.827 3 5 hm5C_associated_SNPs_36292 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 22bp
chr9 135919202 135919202 1 + C T SKCM 135919215 + 135919195 135919235 41 CTCCGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC CTCCGGCTCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC < 41bp 1 0.0552421648085524 1 0.0388269126415253 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919215 chr9:135919202 nonsynonymous SNV 0.444 0 8 hm5C_associated_SNPs_36297 0 0 1 0 1 GTF3C5 chr9:135919115 3'AG 135919115 Downstream 88bp
chr12 62938739 62938739 1 + T A SKCM 62938730 + 62938710 62938750 41 ATGGGGAGCAGAAGCTTTAACTTCTCTTATTAAAGCAGGAT ATGGGGAGCAGAAGCTTTAACTTCTCTTAATAAAGCAGGAT < 41bp 1 0.204274608764404 1 0.22365528345108 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62938730 chr12:62938739 nonsynonymous SNV 0.996 4 30 hm5C_associated_SNPs_36298 0 0 1 0 2 MON2 chr12:62938678 3'AG 62938678 Downstream 62bp
chr12 62938739 62938739 1 + T A SKCM 62938730 + 62938710 62938750 41 ATGGGGAGCAGAAGCTTTAACTTCTCTTATTAAAGCAGGAT ATGGGGAGCAGAAGCTTTAACTTCTCTTAATAAAGCAGGAT < 41bp 1 0.204274608764404 1 0.22365528345108 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62938730 chr12:62938739 nonsynonymous SNV 0.996 4 30 hm5C_associated_SNPs_36298 0 0 1 0 2 MON2 chr12:62938788 5'GT 62938788 Upstream 50bp
chr12 104492139 104492139 1 + C T SKCM 104492140 + 104492120 104492160 41 GAAAGAGACTCCTTCAAATCCAGTGGCCACAGTGAAAGCGG GAAAGAGACTCCTTCAAATTCAGTGGCCACAGTGAAAGCGG < 41bp 1 0.582520101369266 1 0.560189485549927 experiment 0.834959797261469 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104492140 chr12:104492139 nonsynonymous SNV 1.000 0 20 hm5C_associated_SNPs_36299 0 0 1 0 1 HCFC2 chr12:104492121 3'AG 104492121 Downstream 19bp
chr1 242052799 242052799 1 + C T SKCM 242052812 + 242052792 242052832 41 AAGAAACCCCTGTCCCCAGTCAGAGATAACATCCAACTAAC AAGAAACTCCTGTCCCCAGTCAGAGATAACATCCAACTAAC < 41bp 1 0.718555357119246 1 0.953845798969269 experiment 0.562889285761508 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EXO1 ENSG00000174371 CDS Human other chr1:242052812 chr1:242052799 nonsynonymous SNV 0.993 3 8 hm5C_associated_SNPs_36301 0 0 1 1 2 EXO1;EXO1 chr1:242052767 3'AG 242052767 Downstream 33bp
chr1 242052799 242052799 1 + C T SKCM 242052812 + 242052792 242052832 41 AAGAAACCCCTGTCCCCAGTCAGAGATAACATCCAACTAAC AAGAAACTCCTGTCCCCAGTCAGAGATAACATCCAACTAAC < 41bp 1 0.718555357119246 1 0.953845798969269 experiment 0.562889285761508 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EXO1 ENSG00000174371 CDS Human protein_coding chr1:242052812 chr1:242052799 nonsynonymous SNV 0.993 3 8 hm5C_associated_SNPs_36301 0 0 1 1 2 EXO1 chr1:242052769 3'AG 242052769 Downstream 31bp
chr21 46900038 46900038 1 + C T SKCM 46900048 + 46900028 46900068 41 GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACGACAAGC GCCTCCAGGGTCCCCAGGACCCTCCTTCAGACACGACAAGC < 41bp 1 0.0563877953301571 1 0.0442568063735962 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900048 chr21:46900038 nonsynonymous SNV 0.800 4 11 hm5C_associated_SNPs_36302 0 0 1 0 2 COL18A1 chr21:46899984 3'AG 46899984 Downstream 55bp
chr21 46900038 46900038 1 + C T SKCM 46900048 + 46900028 46900068 41 GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACGACAAGC GCCTCCAGGGTCCCCAGGACCCTCCTTCAGACACGACAAGC < 41bp 1 0.0563877953301571 1 0.0442568063735962 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900048 chr21:46900038 nonsynonymous SNV 0.800 4 11 hm5C_associated_SNPs_36302 0 0 1 0 2 COL18A1 chr21:46900070 5'GT 46900070 Upstream 33bp
chr19 45535846 45535846 1 + C T SKCM 45535862 + 45535842 45535882 41 TTCTCCCAGGCCGACGTGCACCGCCAGATTGCCATTGTGTT TTCTTCCAGGCCGACGTGCACCGCCAGATTGCCATTGTGTT < 41bp 1 0.0914500413515334 1 0.105074971914291 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RELB ENSG00000104856 CDS Human protein_coding chr19:45535862 chr19:45535846 nonsynonymous SNV 0.990 5 5 hm5C_associated_SNPs_36303 0 0 1 0 1 RELB chr19:45535792 3'AG 45535792 Downstream 55bp
chr21 46900039 46900039 1 + C T SKCM 46900048 + 46900028 46900068 41 GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACGACAAGC GCCTCCAGGGCTCCCAGGACCCTCCTTCAGACACGACAAGC < 41bp 1 0.0458634457470133 1 0.0569009184837341 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900048 chr21:46900039 nonsynonymous SNV 0.793 2 12 hm5C_associated_SNPs_36306 0 0 1 0 2 COL18A1 chr21:46899984 3'AG 46899984 Downstream 56bp
chr21 46900039 46900039 1 + C T SKCM 46900048 + 46900028 46900068 41 GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACGACAAGC GCCTCCAGGGCTCCCAGGACCCTCCTTCAGACACGACAAGC < 41bp 1 0.0458634457470133 1 0.0569009184837341 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900048 chr21:46900039 nonsynonymous SNV 0.793 2 12 hm5C_associated_SNPs_36306 0 0 1 0 2 COL18A1 chr21:46900070 5'GT 46900070 Upstream 32bp
chrX 70516441 70516441 1 + C T SKCM 70516440 + 70516420 70516460 41 CTCGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT CTCGTCCTGTGACTGTGGAGCTCATGGACCAGTTAGATGAT < 41bp 1 0.260317999581776 1 0.106545180082321 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516440 chrX:70516441 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_36307 0 0 1 0 2 NONO chrX:70516415 3'AG 70516415 Downstream 27bp
chrX 70516441 70516441 1 + C T SKCM 70516440 + 70516420 70516460 41 CTCGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT CTCGTCCTGTGACTGTGGAGCTCATGGACCAGTTAGATGAT < 41bp 1 0.260317999581776 1 0.106545180082321 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516440 chrX:70516441 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_36307 0 0 1 0 2 NONO chrX:70516510 5'GT 70516510 Upstream 70bp
chr15 25222160 25222160 1 + G A SKCM 25222166 + 25222146 25222186 41 TGTCCGAGGAGTTGGGGGACCATCCCAGCAGGTGAGGAACC TGTCCGAGGAGTTGAGGGACCATCCCAGCAGGTGAGGAACC < 41bp 1 0.13006514616044 1 0.159327447414398 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25222166 chr15:25222160 nonsynonymous SNV 0.967 3 15 hm5C_associated_SNPs_36308 0 0 1 1 1 SNRPN chr15:25222176 5'GT 25222176 Upstream 17bp
chr12 112910842 112910842 1 + C T SKCM 112910843 + 112910823 112910863 41 AGATATAAAAACATCCTGCCCTGTAAGTATCAATATTCCGC AGATATAAAAACATCCTGCTCTGTAAGTATCAATATTCCGC < 41bp 1 0.334995310265961 1 0.054923415184021 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112910843 chr12:112910842 nonsynonymous SNV 1.000 5 20 hm5C_associated_SNPs_36310 0 0 0 0 2 PTPN11 chr12:112910748 3'AG 112910748 Downstream 95bp
chr12 112910842 112910842 1 + C T SKCM 112910843 + 112910823 112910863 41 AGATATAAAAACATCCTGCCCTGTAAGTATCAATATTCCGC AGATATAAAAACATCCTGCTCTGTAAGTATCAATATTCCGC < 41bp 1 0.334995310265961 1 0.054923415184021 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112910843 chr12:112910842 nonsynonymous SNV 1.000 5 20 hm5C_associated_SNPs_36310 0 0 0 0 2 PTPN11 chr12:112910844 5'GT 112910844 Upstream 3bp
chr4 41652434 41652434 1 + G A SKCM 41652424 + 41652404 41652444 41 TTATAGGTAGACGGGAAAGTCAGTGTGAATGGAGAGACGGT TTATAGGTAGACGGGAAAGTCAGTGTGAATAGAGAGACGGT < 41bp 1 0.363499537882774 1 0.473977267742157 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41652424 chr4:41652434 nonsynonymous SNV 0.938 4 31 hm5C_associated_SNPs_36313 0 0 1 0 1 LIMCH1 chr4:41652410 3'AG 41652410 Downstream 25bp
chr10 73056476 73056476 1 + C T SKCM 73056491 + 73056471 73056511 41 TATTCCAGCTGCATACCACTCTGGCAGAGGTGAGGGAAGTC TATTCTAGCTGCATACCACTCTGGCAGAGGTGAGGGAAGTC < 41bp 1 0.440326579521228 1 0.444851607084274 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UNC5B ENSG00000107731 CDS Human protein_coding chr10:73056491 chr10:73056476 stopgain 0.998 1 6 hm5C_associated_SNPs_36315 0 0 1 0 1 UNC5B chr10:73056499 5'GT 73056499 Upstream 24bp
chr3 9489407 9489407 1 + C T SKCM 9489393 + 9489373 9489413 41 ATTGCTGCAGAAAAACTAGTCCCCAAGCCACCTCCAGCAAA ATTGCTGCAGAAAAACTAGTCCCCAAGCCACCTCTAGCAAA < 41bp 1 0.495062420559232 1 0.182265192270279 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SETD5 ENSG00000168137 CDS Human protein_coding chr3:9489393 chr3:9489407 nonsynonymous SNV 1.000 5 35 hm5C_associated_SNPs_36316 0 0 1 0 1 SETD5 chr3:9489370 3'AG 9489370 Downstream 38bp
chrX 7171306 7171306 1 + G A SKCM 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGCATCAAGGCCAAACATCATCCTGGTGATGGCTGACGA < 41bp 1 0.292431980773345 1 0.0695810616016388 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171306 synonymous SNV . 0 15 hm5C_associated_SNPs_36317 0 0 1 2 1 STS chrX:7171237 3'AG 7171237 Downstream 70bp
chr5 156816274 156816274 1 + C T SKCM 156816259 + 156816239 156816279 41 CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTGAC CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATTCTGAC < 41bp 1 0.264374020424774 1 0.652402877807617 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816259 chr5:156816274 synonymous SNV . 0 36 hm5C_associated_SNPs_36318 0 0 1 0 1 CYFIP2 chr5:156816197 3'AG 156816197 Downstream 78bp
chr11 126143258 126143258 1 + C T SKCM 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCGATGCTCCTTCCCTGGACCTCCGGTTCA < 41bp 1 0.348280727965931 1 0.0477394163608551 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143258 nonsynonymous SNV 0.058 1 23 hm5C_associated_SNPs_36319 0 0 1 0 3 FOXRED1 chr11:126143211 3'AG 126143211 Downstream 48bp
chr11 126143258 126143258 1 + C T SKCM 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCGATGCTCCTTCCCTGGACCTCCGGTTCA < 41bp 1 0.348280727965931 1 0.0477394163608551 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143258 nonsynonymous SNV 0.058 1 23 hm5C_associated_SNPs_36319 0 0 1 0 3 FOXRED1 chr11:126143231 3'AG 126143231 Downstream 28bp
chr11 126143258 126143258 1 + C T SKCM 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCGATGCTCCTTCCCTGGACCTCCGGTTCA < 41bp 1 0.348280727965931 1 0.0477394163608551 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143258 nonsynonymous SNV 0.058 1 23 hm5C_associated_SNPs_36319 0 0 1 0 3 FOXRED1 chr11:126143349 5'GT 126143349 Upstream 92bp
chr11 126143259 126143259 1 + C T SKCM 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCGATGCTCCTCTCCTGGACCTCCGGTTCA < 41bp 1 0.37951420299069 1 0.0509857833385468 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143259 nonsynonymous SNV 0.046 2 24 hm5C_associated_SNPs_36324 0 0 1 0 3 FOXRED1 chr11:126143211 3'AG 126143211 Downstream 49bp
chr11 126143259 126143259 1 + C T SKCM 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCGATGCTCCTCTCCTGGACCTCCGGTTCA < 41bp 1 0.37951420299069 1 0.0509857833385468 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143259 nonsynonymous SNV 0.046 2 24 hm5C_associated_SNPs_36324 0 0 1 0 3 FOXRED1 chr11:126143231 3'AG 126143231 Downstream 29bp
chr11 126143259 126143259 1 + C T SKCM 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCGATGCTCCTCTCCTGGACCTCCGGTTCA < 41bp 1 0.37951420299069 1 0.0509857833385468 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143259 nonsynonymous SNV 0.046 2 24 hm5C_associated_SNPs_36324 0 0 1 0 3 FOXRED1 chr11:126143349 5'GT 126143349 Upstream 91bp
chr19 36370325 36370325 1 + C T SKCM 36370340 + 36370320 36370360 41 CGCTTCCTGGAGGAACGACCCTGACCCGGCCCCCTTCACCC CGCTTTCTGGAGGAACGACCCTGACCCGGCCCCCTTCACCC < 41bp 1 0.454345918014297 1 0.0999417901039124 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APLP1 ENSG00000105290 CDS Human protein_coding chr19:36370340 chr19:36370325 synonymous SNV . 0 6 hm5C_associated_SNPs_36325 0 0 1 0 1 APLP1 chr19:36370245 3'AG 36370245 Downstream 81bp
chr14 23944952 23944952 1 + C T SKCM 23944972 + 23944952 23944992 41 CGTTTTAAGCCTCATCCCAGCAATATGATGAGCAAGGTAAG TGTTTTAAGCCTCATCCCAGCAATATGATGAGCAAGGTAAG < 41bp 1 0.353313926969129 1 0.45010244846344 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NGDN ENSG00000129460 CDS Human protein_coding chr14:23944972 chr14:23944952 nonsynonymous SNV 0.990 1 1 hm5C_associated_SNPs_36326 0 0 1 0 2 NGDN chr14:23944935 3'AG 23944935 Downstream 18bp
chr14 23944952 23944952 1 + C T SKCM 23944972 + 23944952 23944992 41 CGTTTTAAGCCTCATCCCAGCAATATGATGAGCAAGGTAAG TGTTTTAAGCCTCATCCCAGCAATATGATGAGCAAGGTAAG < 41bp 1 0.353313926969129 1 0.45010244846344 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NGDN ENSG00000129460 CDS Human protein_coding chr14:23944972 chr14:23944952 nonsynonymous SNV 0.990 1 1 hm5C_associated_SNPs_36326 0 0 1 0 2 NGDN chr14:23944987 5'GT 23944987 Upstream 36bp
chr17 78082402 78082402 1 + C T SKCM 78082382 + 78082362 78082402 41 ACCCGCCAGGTGGTGGAGAACATGACCAGGGCCCACTTCCC ACCCGCCAGGTGGTGGAGAACATGACCAGGGCCCACTTCCT < 41bp 1 0.735510952539667 1 0.181580007076263 experiment 0.528978094920666 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082382 chr17:78082402 nonsynonymous SNV 0.938 5 41 hm5C_associated_SNPs_36329 0 0 0 0 1 GAA chr17:78082406 5'GT 78082406 Upstream 5bp
chr17 78082402 78082402 1 + C T SKCM 78082400 + 78082380 78082420 41 AACATGACCAGGGCCCACTTCCCCCTGGTGAGTTGGGGTGG AACATGACCAGGGCCCACTTCCTCCTGGTGAGTTGGGGTGG < 41bp 1 0.113498733129564 1 0.389977753162384 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082400 chr17:78082402 nonsynonymous SNV 0.938 5 23 hm5C_associated_SNPs_36330 0 0 0 0 1 GAA chr17:78082406 5'GT 78082406 Upstream 5bp
chr17 78082402 78082402 1 + C T SKCM 78082404 + 78082384 78082424 41 TGACCAGGGCCCACTTCCCCCTGGTGAGTTGGGGTGGTGGC TGACCAGGGCCCACTTCCTCCTGGTGAGTTGGGGTGGTGGC < 41bp 1 0.612664654710813 1 0.434816122055054 experiment 0.774670690578373 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082404 chr17:78082402 nonsynonymous SNV 0.938 5 19 hm5C_associated_SNPs_36331 0 0 0 0 1 GAA chr17:78082406 5'GT 78082406 Upstream 5bp
chr1 233489663 233489663 1 + C T SKCM 233489675 + 233489655 233489695 41 GCCCATTCCATCCACCTGCCCTGAGCCGTTTGCCAAGCTCA GCCCATTCTATCCACCTGCCCTGAGCCGTTTGCCAAGCTCA < 41bp 1 0.355158530629972 1 0.138640016317368 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233489675 chr1:233489663 nonsynonymous SNV 0.963 5 9 hm5C_associated_SNPs_36332 0 0 1 0 1 MAP3K21 chr1:233489701 5'GT 233489701 Upstream 39bp
chr17 80521235 80521235 1 + C T SKCM 80521253 + 80521233 80521273 41 CACATTCAGGTTCCCGAGCACAAACATCAAGATAACGTTCA CATATTCAGGTTCCCGAGCACAAACATCAAGATAACGTTCA < 41bp 1 0.115837178653992 1 0.108410328626633 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80521253 chr17:80521235 nonsynonymous SNV 0.959 2 3 hm5C_associated_SNPs_36333 0 0 1 0 1 FOXK2 chr17:80521230 3'AG 80521230 Downstream 6bp
chr19 56153915 56153915 1 + C T SKCM 56153916 + 56153896 56153936 41 CCACCCCACCCTCGGTCCTCCTCTCCGGAGGCCATGGACCC CCACCCCACCCTCGGTCCTTCTCTCCGGAGGCCATGGACCC < 41bp 1 0.15118193373222 1 0.229142040014267 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF580 ENSG00000213015 CDS Human protein_coding chr19:56153916 chr19:56153915 nonsynonymous SNV 0.999 0 20 hm5C_associated_SNPs_36334 0 0 1 0 1 ZNF580 chr19:56153863 3'AG 56153863 Downstream 53bp
chr7 74103493 74103493 1 + G A SKCM 74103486 + 74103466 74103506 41 GCCCAAGTTGCAATGTCCACCCTCCCCGTTGAAGATGAGGA GCCCAAGTTGCAATGTCCACCCTCCCCATTGAAGATGAGGA < 41bp 1 0.027559530726698 1 0.138553470373154 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GTF2I ENSG00000077809 CDS Human processed_transcript chr7:74103486 chr7:74103493 nonsynonymous SNV 0.682 0 28 hm5C_associated_SNPs_36336 0 0 1 0 2 LOC101926943 chr7:74103458 3'AG 74103458 Downstream 36bp
chr7 74103493 74103493 1 + G A SKCM 74103486 + 74103466 74103506 41 GCCCAAGTTGCAATGTCCACCCTCCCCGTTGAAGATGAGGA GCCCAAGTTGCAATGTCCACCCTCCCCATTGAAGATGAGGA < 41bp 1 0.027559530726698 1 0.138553470373154 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GTF2I ENSG00000077809 CDS Human other chr7:74103486 chr7:74103493 nonsynonymous SNV 0.682 0 28 hm5C_associated_SNPs_36336 0 0 1 0 2 GTF2I chr7:74103561 5'GT 74103561 Upstream 69bp
chr7 74103493 74103493 1 + G A SKCM 74103487 + 74103467 74103507 41 CCCAAGTTGCAATGTCCACCCTCCCCGTTGAAGATGAGGAG CCCAAGTTGCAATGTCCACCCTCCCCATTGAAGATGAGGAG < 41bp 1 0.391033662694378 1 0.144692152738571 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTF2I ENSG00000077809 CDS Human processed_transcript chr7:74103487 chr7:74103493 nonsynonymous SNV 0.682 0 27 hm5C_associated_SNPs_36337 0 0 1 0 2 LOC101926943 chr7:74103458 3'AG 74103458 Downstream 36bp
chr7 74103493 74103493 1 + G A SKCM 74103487 + 74103467 74103507 41 CCCAAGTTGCAATGTCCACCCTCCCCGTTGAAGATGAGGAG CCCAAGTTGCAATGTCCACCCTCCCCATTGAAGATGAGGAG < 41bp 1 0.391033662694378 1 0.144692152738571 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTF2I ENSG00000077809 CDS Human other chr7:74103487 chr7:74103493 nonsynonymous SNV 0.682 0 27 hm5C_associated_SNPs_36337 0 0 1 0 2 GTF2I chr7:74103561 5'GT 74103561 Upstream 69bp
chr19 14512303 14512303 1 + G T SKCM 14512320 + 14512300 14512340 41 CTTGAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA CTTTAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA < 41bp 1 0.268093565722974 1 0.0529019236564636 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14512320 chr19:14512303 stopgain 0.005 0 4 hm5C_associated_SNPs_36339 0 0 1 0 1 ADGRE5 chr19:14512375 5'GT 14512375 Upstream 73bp
chr19 14512302 14512302 1 + T C SKCM 14512320 + 14512300 14512340 41 CTTGAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA CTCGAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA < 41bp 1 0.241054916948652 1 0.0478146970272064 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14512320 chr19:14512302 synonymous SNV . 0 3 hm5C_associated_SNPs_36342 0 0 1 0 1 ADGRE5 chr19:14512375 5'GT 14512375 Upstream 74bp
chr3 49736478 49736478 1 + C T SKCM 49736459 + 49736439 49736479 41 TTGAGAACCTGTCCAGGGGCCTGGGTATGGCCTACTTCCCA TTGAGAACCTGTCCAGGGGCCTGGGTATGGCCTACTTCCTA < 41bp 1 0.596742000234492 1 0.241994440555573 experiment 0.806515999531016 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49736459 chr3:49736478 nonsynonymous SNV 1.000 5 40 hm5C_associated_SNPs_36343 0 0 1 0 1 RNF123 chr3:49736413 3'AG 49736413 Downstream 66bp
chr16 83992993 83992993 1 + C T SKCM 83992986 + 83992966 83993006 41 CTCACCGAGGCCCCGGGGGTCTCCATCCTGGACCAGGTGGG CTCACCGAGGCCCCGGGGGTCTCCATCTTGGACCAGGTGGG < 41bp 1 0.608765343524285 1 0.867018342018127 experiment 0.78246931295143 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83992986 chr16:83992993 synonymous SNV . 0 28 hm5C_associated_SNPs_36344 0 0 0 0 1 OSGIN1 chr16:83993001 5'GT 83993001 Upstream 9bp
chr7 142458423 142458423 1 + G A SKCM 142458409 + 142458389 142458429 41 TCCCATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATG TCCCATCTCCACTCCAGTTGCTGCCCCCTTTGATAATGATG < 41bp 1 0.0536258914185841 1 0.108094543218613 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458409 chr7:142458423 nonsynonymous SNV 0.157 1 35 hm5C_associated_SNPs_36345 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 18bp
chr7 142458423 142458423 1 + G A SKCM 142458412 + 142458392 142458432 41 CATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACA CATCTCCACTCCAGTTGCTGCCCCCTTTGATAATGATGACA < 41bp 1 0.0186152138938693 1 0.186420798301697 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458412 chr7:142458423 nonsynonymous SNV 0.157 1 32 hm5C_associated_SNPs_36346 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 18bp
chr7 142458423 142458423 1 + G A SKCM 142458413 + 142458393 142458433 41 ATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAA ATCTCCACTCCAGTTGCTGCCCCCTTTGATAATGATGACAA < 41bp 1 0.0655060412460687 1 0.12497290968895 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458413 chr7:142458423 nonsynonymous SNV 0.157 1 31 hm5C_associated_SNPs_36347 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 18bp
chr7 142458423 142458423 1 + G A SKCM 142458414 + 142458394 142458434 41 TCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAG TCTCCACTCCAGTTGCTGCCCCCTTTGATAATGATGACAAG < 41bp 1 0.0264657715079147 1 0.121429175138474 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458414 chr7:142458423 nonsynonymous SNV 0.157 1 30 hm5C_associated_SNPs_36348 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 18bp
chr7 142458423 142458423 1 + G A SKCM 142458415 + 142458395 142458435 41 CTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGA CTCCACTCCAGTTGCTGCCCCCTTTGATAATGATGACAAGA < 41bp 1 0.00280536677567591 1 0.0756044387817383 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458415 chr7:142458423 nonsynonymous SNV 0.157 1 29 hm5C_associated_SNPs_36349 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 18bp
chr7 142458423 142458423 1 + G A SKCM 142458416 + 142458396 142458436 41 TCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGAT TCCACTCCAGTTGCTGCCCCCTTTGATAATGATGACAAGAT < 41bp 1 0.0419390672836784 1 0.0673637390136719 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458416 chr7:142458423 nonsynonymous SNV 0.157 1 28 hm5C_associated_SNPs_36350 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 18bp
chr7 142458423 142458423 1 + G A SKCM 142458431 + 142458411 142458451 41 GCCCCCTTTGATGATGATGACAAGATCGTTGGGGGCTACAA GCCCCCTTTGATAATGATGACAAGATCGTTGGGGGCTACAA < 41bp 1 0.630116945474428 1 0.311188101768494 experiment 0.739766109051143 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458431 chr7:142458423 nonsynonymous SNV 0.157 1 13 hm5C_associated_SNPs_36351 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 18bp
chr7 142458423 142458423 1 + G A SKCM 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATAATGATGACAAGATCGTTGGGGGCTACAACTGTGA < 41bp 1 0.234410097658468 1 0.140677601099014 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458423 nonsynonymous SNV 0.157 1 7 hm5C_associated_SNPs_36352 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 18bp
chr13 111156522 111156522 1 + G A SKCM 111156524 + 111156504 111156544 41 GGGCTCCAGGGAAAGCTGGGCCCCAAGGAAGAGGTGGTGTG GGGCTCCAGGGAAAGCTGAGCCCCAAGGAAGAGGTGGTGTG < 41bp 1 0.139905831582334 1 0.116137146949768 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111156524 chr13:111156522 nonsynonymous SNV 0.981 4 19 hm5C_associated_SNPs_36354 0 0 0 0 2 COL4A2 chr13:111156495 3'AG 111156495 Downstream 28bp
chr13 111156522 111156522 1 + G A SKCM 111156524 + 111156504 111156544 41 GGGCTCCAGGGAAAGCTGGGCCCCAAGGAAGAGGTGGTGTG GGGCTCCAGGGAAAGCTGAGCCCCAAGGAAGAGGTGGTGTG < 41bp 1 0.139905831582334 1 0.116137146949768 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111156524 chr13:111156522 nonsynonymous SNV 0.981 4 19 hm5C_associated_SNPs_36354 0 0 0 0 2 COL4A2 chr13:111156611 5'GT 111156611 Upstream 90bp
chr13 111156522 111156522 1 + G A SKCM 111156527 + 111156507 111156547 41 CTCCAGGGAAAGCTGGGCCCCAAGGAAGAGGTGGTGTGTCT CTCCAGGGAAAGCTGAGCCCCAAGGAAGAGGTGGTGTGTCT < 41bp 1 0.249300406829414 1 0.34833300113678 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111156527 chr13:111156522 nonsynonymous SNV 0.981 4 16 hm5C_associated_SNPs_36355 0 0 0 0 2 COL4A2 chr13:111156495 3'AG 111156495 Downstream 28bp
chr13 111156522 111156522 1 + G A SKCM 111156527 + 111156507 111156547 41 CTCCAGGGAAAGCTGGGCCCCAAGGAAGAGGTGGTGTGTCT CTCCAGGGAAAGCTGAGCCCCAAGGAAGAGGTGGTGTGTCT < 41bp 1 0.249300406829414 1 0.34833300113678 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111156527 chr13:111156522 nonsynonymous SNV 0.981 4 16 hm5C_associated_SNPs_36355 0 0 0 0 2 COL4A2 chr13:111156611 5'GT 111156611 Upstream 90bp
chr7 66660289 66660289 1 + G A SKCM 66660306 + 66660286 66660326 41 CACGAACACTCTAATTGCCTCCTGATAGCACACAGAAAGGT CACAAACACTCTAATTGCCTCCTGATAGCACACAGAAAGGT < 41bp 1 0.137141518131716 1 0.274556696414948 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66660306 chr7:66660289 nonsynonymous SNV 0.989 0 4 hm5C_associated_SNPs_36356 0 0 0 0 1 TYW1 chr7:66660324 5'GT 66660324 Upstream 36bp
chr15 91456115 91456115 1 + C T SKCM 91456118 + 91456098 91456138 41 TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCCCGTGCTGCG TTTCTCTAGCCCTACGTTCCCAAGGAGCCCCCCGTGCTGCG < 41bp 1 0.737908570605848 1 0.955120861530304 experiment 0.524182858788304 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91456118 chr15:91456115 synonymous SNV . 0 18 hm5C_associated_SNPs_36357 0 0 1 0 1 MAN2A2 chr15:91456107 3'AG 91456107 Downstream 9bp
chr19 50339161 50339161 1 + G A SKCM 50339146 + 50339126 50339166 41 CTCCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAAC CTCCTGGACCCATCCTTCGGCCCCAGAACCCTGGGACCAAC < 41bp 1 0.382087516271515 1 0.121413469314575 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339146 chr19:50339161 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_36358 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 42bp
chr19 50339161 50339161 1 + G A SKCM 50339147 + 50339127 50339167 41 TCCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACC TCCTGGACCCATCCTTCGGCCCCAGAACCCTGGGACCAACC < 41bp 1 0.129934669676932 1 0.0744988322257996 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339147 chr19:50339161 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_36359 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 42bp
chr19 50339161 50339161 1 + G A SKCM 50339148 + 50339128 50339168 41 CCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACCC CCTGGACCCATCCTTCGGCCCCAGAACCCTGGGACCAACCC < 41bp 1 0.377144374861274 1 0.113219499588013 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339148 chr19:50339161 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_36360 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 42bp
chr19 50339161 50339161 1 + G A SKCM 50339149 + 50339129 50339169 41 CTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACCCT CTGGACCCATCCTTCGGCCCCAGAACCCTGGGACCAACCCT < 41bp 1 0.422572148623459 1 0.269625246524811 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339149 chr19:50339161 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_36361 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 42bp
chr19 50339161 50339161 1 + G A SKCM 50339162 + 50339142 50339182 41 TCGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCC TCGGCCCCAGAACCCTGGGACCAACCCTCAGCTGCGAAGCC < 41bp 1 0.0201920684975995 1 0.0230116844177246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339162 chr19:50339161 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_36362 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 42bp
chr19 50339161 50339161 1 + G A SKCM 50339163 + 50339143 50339183 41 CGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCCT CGGCCCCAGAACCCTGGGACCAACCCTCAGCTGCGAAGCCT < 41bp 1 0.143150497029389 1 0.0487706959247589 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339163 chr19:50339161 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_36363 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 42bp
chr22 32275641 32275641 1 + C T SKCM 32275660 + 32275640 32275680 41 TCCTGCCCTGGCTGCCTAGCCGGCCAGCCTCCTATGCAAGT TTCTGCCCTGGCTGCCTAGCCGGCCAGCCTCCTATGCAAGT < 41bp 1 0.499835543268575 1 0.20054417848587 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32275660 chr22:32275641 nonsynonymous SNV . 0 2 hm5C_associated_SNPs_36364 0 0 0 0 1 DEPDC5 chr22:32275738 5'GT 32275738 Upstream 98bp
chr19 19308364 19308364 1 + C T SKCM 19308370 + 19308350 19308390 41 CCAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGC CCAGACGAGCGCGGTTTCACCCCCCTCATCTGGGCCTCCGC < 41bp 1 0.353125303089394 1 0.0950374603271484 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308370 chr19:19308364 synonymous SNV . 0 15 hm5C_associated_SNPs_36365 0 0 1 0 2 RFXANK chr19:19308330 3'AG 19308330 Downstream 35bp
chr19 19308364 19308364 1 + C T SKCM 19308370 + 19308350 19308390 41 CCAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGC CCAGACGAGCGCGGTTTCACCCCCCTCATCTGGGCCTCCGC < 41bp 1 0.353125303089394 1 0.0950374603271484 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308370 chr19:19308364 synonymous SNV . 0 15 hm5C_associated_SNPs_36365 0 0 1 0 2 RFXANK chr19:19308430 5'GT 19308430 Upstream 67bp
chr19 19308364 19308364 1 + C T SKCM 19308371 + 19308351 19308391 41 CAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGCC CAGACGAGCGCGGTTTCACCCCCCTCATCTGGGCCTCCGCC < 41bp 1 0.288088347040477 1 0.11310550570488 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308371 chr19:19308364 synonymous SNV . 0 14 hm5C_associated_SNPs_36366 0 0 1 0 2 RFXANK chr19:19308330 3'AG 19308330 Downstream 35bp
chr19 19308364 19308364 1 + C T SKCM 19308371 + 19308351 19308391 41 CAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGCC CAGACGAGCGCGGTTTCACCCCCCTCATCTGGGCCTCCGCC < 41bp 1 0.288088347040477 1 0.11310550570488 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308371 chr19:19308364 synonymous SNV . 0 14 hm5C_associated_SNPs_36366 0 0 1 0 2 RFXANK chr19:19308430 5'GT 19308430 Upstream 67bp
chr12 113400489 113400489 1 + C T SKCM 113400499 + 113400479 113400519 41 AAGGACCAGCCCCTGCCTCTCTGCCCCCAGCCTATGCCCTG AAGGACCAGCTCCTGCCTCTCTGCCCCCAGCCTATGCCCTG < 41bp 1 0.392495517129285 1 0.372236788272858 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OAS3 ENSG00000111331 CDS Human protein_coding chr12:113400499 chr12:113400489 synonymous SNV . 0 11 hm5C_associated_SNPs_36367 0 0 0 0 1 OAS3 chr12:113400457 3'AG 113400457 Downstream 33bp
chr9 72003127 72003127 1 + C A SKCM 72003140 + 72003120 72003160 41 ACTGGATCTGGCTGCAGTGACTCTGAGGAGAGGCTTGAGAT ACTGGATATGGCTGCAGTGACTCTGAGGAGAGGCTTGAGAT < 41bp 1 0.596603235458229 1 0.375360459089279 experiment 0.806793529083541 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM189A2 ENSG00000135063 CDS Human protein_coding chr9:72003140 chr9:72003127 nonsynonymous SNV 0.994 0 8 hm5C_associated_SNPs_36375 0 0 1 0 1 FAM189A2 chr9:72003074 3'AG 72003074 Downstream 54bp
chr11 117280369 117280369 1 + C T SKCM 117280351 + 117280331 117280371 41 CAGTCGACTCAACCCCGAGTCTCACCTCCCGCAAGATCCAC CAGTCGACTCAACCCCGAGTCTCACCTCCCGCAAGATCTAC < 41bp 1 0.140540354010391 1 0.0324214398860931 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP164 ENSG00000110274 CDS Human protein_coding chr11:117280351 chr11:117280369 nonsynonymous SNV 0.015 1 39 hm5C_associated_SNPs_36376 0 0 0 0 1 CEP164 chr11:117280334 3'AG 117280334 Downstream 36bp
chr19 45260400 45260400 1 + C T SKCM 45260397 + 45260377 45260417 41 CCGCTCACCTGGCGTGCGAGCACCGCAGCCCGACCTGCCTG CCGCTCACCTGGCGTGCGAGCACTGCAGCCCGACCTGCCTG < 41bp 1 0.487506757598363 1 0.318842530250549 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCL3 ENSG00000069399 CDS Human protein_coding chr19:45260397 chr19:45260400 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_36377 0 0 0 0 1 BCL3 chr19:45260478 5'GT 45260478 Upstream 79bp
chr19 11213363 11213363 1 + G A SKCM 11213368 + 11213348 11213388 41 ACCTGCAAATCCGGGGACTTCAGCTGTGGGGGCCGTGTCAA ACCTGCAAATCCGGGAACTTCAGCTGTGGGGGCCGTGTCAA < 41bp 1 0.612715108851848 1 0.730235993862152 experiment 0.774569782296304 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LDLR ENSG00000130164 CDS Human protein_coding chr19:11213368 chr19:11213363 nonsynonymous SNV 0.244 2 16 hm5C_associated_SNPs_36378 0 0 1 0 1 LDLR chr19:11213462 5'GT 11213462 Upstream 100bp
chr2 189852853 189852853 1 + G A SKCM 189852859 + 189852839 189852879 41 ATCTGGTCATCCTGGTTCCCCTGTAAGTATAGCCATTGGTG ATCTGGTCATCCTGATTCCCCTGTAAGTATAGCCATTGGTG < 41bp 1 0.333410078443271 1 0.0649442374706268 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189852859 chr2:189852853 nonsynonymous SNV 0.980 5 15 hm5C_associated_SNPs_36379 0 0 0 0 2 COL3A1 chr2:189852807 3'AG 189852807 Downstream 47bp
chr2 189852853 189852853 1 + G A SKCM 189852859 + 189852839 189852879 41 ATCTGGTCATCCTGGTTCCCCTGTAAGTATAGCCATTGGTG ATCTGGTCATCCTGATTCCCCTGTAAGTATAGCCATTGGTG < 41bp 1 0.333410078443271 1 0.0649442374706268 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189852859 chr2:189852853 nonsynonymous SNV 0.980 5 15 hm5C_associated_SNPs_36379 0 0 0 0 2 COL3A1 chr2:189852860 5'GT 189852860 Upstream 8bp
chr13 50586079 50586079 1 + G A SKCM 50586083 + 50586063 50586103 41 TCTGGTAGGATGTGATGGAGCTGCTTGAAGAAGATCTCACA TCTGGTAGGATGTGATAGAGCTGCTTGAAGAAGATCTCACA < 41bp 1 0.433519269078616 1 0.0494876801967621 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIM13 ENSG00000204977 CDS Human protein_coding chr13:50586083 chr13:50586079 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_36380 0 0 1 0 1 TRIM13 chr13:50586071 3'AG 50586071 Downstream 9bp
chr3 45557692 45557692 1 + G A SKCM 45557701 + 45557681 45557721 41 GTTGTGGAGCAGTATGGGATCGACACGATTCGGCTCTACAT GTTGTGGAGCAATATGGGATCGACACGATTCGGCTCTACAT < 41bp 1 0.750336439985394 1 0.424062490463257 experiment 0.499327120029211 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LARS2 ENSG00000011376 CDS Human protein_coding chr3:45557701 chr3:45557692 synonymous SNV . 0 12 hm5C_associated_SNPs_36381 0 0 0 0 1 LARS2 chr3:45557768 5'GT 45557768 Upstream 77bp
chr13 113479873 113479873 1 + G A SKCM 113479892 + 113479872 113479912 41 AGTCGGAAAGGCAGAGGAATCTGGTATGGAGAATCACTGCC AATCGGAAAGGCAGAGGAATCTGGTATGGAGAATCACTGCC < 41bp 1 0.734285815506485 1 0.531909704208374 experiment 0.53142836898703 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP11A ENSG00000068650 CDS Human protein_coding chr13:113479892 chr13:113479873 synonymous SNV . 0 2 hm5C_associated_SNPs_36385 0 0 1 0 1 ATP11A chr13:113479894 5'GT 113479894 Upstream 22bp
chr12 2783710 2783710 1 + A G SKCM 2783718 + 2783698 2783738 41 GCCCTGCAGGGAACCTAGAACAAGCCAATGAGGAGCTGCGG GCCCTGCAGGGAGCCTAGAACAAGCCAATGAGGAGCTGCGG < 41bp 1 0.36205273994765 1 0.737397313117981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CACNA1C ENSG00000151067 CDS Human protein_coding chr12:2783718 chr12:2783710 nonsynonymous SNV 0.985 4 13 hm5C_associated_SNPs_36386 0 0 0 0 3 CACNA1C chr12:2783650 3'AG 2783650 Downstream 61bp
chr12 2783710 2783710 1 + A G SKCM 2783718 + 2783698 2783738 41 GCCCTGCAGGGAACCTAGAACAAGCCAATGAGGAGCTGCGG GCCCTGCAGGGAGCCTAGAACAAGCCAATGAGGAGCTGCGG < 41bp 1 0.36205273994765 1 0.737397313117981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CACNA1C ENSG00000151067 CDS Human protein_coding chr12:2783718 chr12:2783710 nonsynonymous SNV 0.985 4 13 hm5C_associated_SNPs_36386 0 0 0 0 3 CACNA1C chr12:2783707 3'AG 2783707 Downstream 4bp
chr12 2783710 2783710 1 + A G SKCM 2783718 + 2783698 2783738 41 GCCCTGCAGGGAACCTAGAACAAGCCAATGAGGAGCTGCGG GCCCTGCAGGGAGCCTAGAACAAGCCAATGAGGAGCTGCGG < 41bp 1 0.36205273994765 1 0.737397313117981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CACNA1C ENSG00000151067 CDS Human protein_coding chr12:2783718 chr12:2783710 nonsynonymous SNV 0.985 4 13 hm5C_associated_SNPs_36386 0 0 0 0 3 CACNA1C chr12:2783808 5'GT 2783808 Upstream 99bp
chr3 8579092 8579092 1 + A G SKCM 8579084 + 8579064 8579104 41 AAAGATCCCACTTTTGACACCATCACCTACGAGTGGGCTCC AAAGATCCCACTTTTGACACCATCACCTGCGAGTGGGCTCC < 41bp 1 0.296536869162092 1 0.151864171028137 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LMCD1 ENSG00000071282 CDS Human protein_coding chr3:8579084 chr3:8579092 nonsynonymous SNV 0.990 3 29 hm5C_associated_SNPs_36387 0 0 0 0 1 LMCD1 chr3:8579126 5'GT 8579126 Upstream 35bp
chr12 112130534 112130534 1 + C T SKCM 112130547 + 112130527 112130567 41 GCTGTTTCCAGTCCCCCCGTCTCCAGTGGGTGTGGAGAACA GCTGTTTTCAGTCCCCCCGTCTCCAGTGGGTGTGGAGAACA < 41bp 1 0.781685437717687 1 0.974116623401642 experiment 0.436629124564627 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ACAD10 ENSG00000111271 CDS Human protein_coding chr12:112130547 chr12:112130534 synonymous SNV . 0 8 hm5C_associated_SNPs_36388 0 0 0 0 1 ACAD10 chr12:112130501 3'AG 112130501 Downstream 34bp
chr11 25004817 25004817 1 + C T SKCM 25004826 + 25004806 25004846 41 CTCTAAGCTTCCAGATGCAGCGGCCAAAAGCAAGGTACCTA CTCTAAGCTTCTAGATGCAGCGGCCAAAAGCAAGGTACCTA < 41bp 1 0.271874153395381 1 0.558866858482361 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LUZP2 ENSG00000187398 CDS Human protein_coding chr11:25004826 chr11:25004817 nonsynonymous SNV 0.017 1 12 hm5C_associated_SNPs_36389 0 0 0 0 1 LUZP2 chr11:25004839 5'GT 25004839 Upstream 23bp
chr19 36142191 36142191 1 + C T SKCM 36142189 + 36142169 36142209 41 AATCAAGAACTACAAGACCGCCCCTTTTGACAGCCGCTTCC AATCAAGAACTACAAGACCGCCTCTTTTGACAGCCGCTTCC < 41bp 1 0.118670529925762 1 0.0698641240596771 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COX6B1 ENSG00000126267 CDS Human protein_coding chr19:36142189 chr19:36142191 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_36391 0 0 1 0 2 COX6B1 chr19:36142135 3'AG 36142135 Downstream 57bp
chr19 36142191 36142191 1 + C T SKCM 36142189 + 36142169 36142209 41 AATCAAGAACTACAAGACCGCCCCTTTTGACAGCCGCTTCC AATCAAGAACTACAAGACCGCCTCTTTTGACAGCCGCTTCC < 41bp 1 0.118670529925762 1 0.0698641240596771 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COX6B1 ENSG00000126267 CDS Human protein_coding chr19:36142189 chr19:36142191 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_36391 0 0 1 0 2 COX6B1 chr19:36142251 5'GT 36142251 Upstream 61bp
chr1 43893239 43893239 1 + C T SKCM 43893251 + 43893231 43893271 41 CACCATTCCGTCGAGACTTACAGGCTTACGCTGGGCGTCAG CACCATTCTGTCGAGACTTACAGGCTTACGCTGGGCGTCAG < 41bp 1 0.302624320839265 1 0.898326456546783 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43893251 chr1:43893239 nonsynonymous SNV 0.932 0 9 hm5C_associated_SNPs_36393 0 0 1 0 1 SZT2 chr1:43893201 3'AG 43893201 Downstream 39bp
chr13 111111224 111111224 1 + G A SKCM 111111217 + 111111197 111111237 41 CGCAGGCATCAACGGGGAGCCGGGGAGGAAAGGGGACAGAG CGCAGGCATCAACGGGGAGCCGGGGAGAAAAGGGGACAGAG < 41bp 1 0.688838454124147 1 0.845823526382446 experiment 0.622323091751705 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111217 chr13:111111224 synonymous SNV . 0 28 hm5C_associated_SNPs_36394 0 0 0 0 1 COL4A2 chr13:111111281 5'GT 111111281 Upstream 58bp
chr15 41229658 41229658 1 + G A SKCM 41229671 + 41229651 41229691 41 CCCCCAGGGACTCCATGTACCAGTCTGTGTGTTTGATATCA CCCCCAGAGACTCCATGTACCAGTCTGTGTGTTTGATATCA < 41bp 1 0.129934587660837 1 0.231269687414169 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DLL4 ENSG00000128917 CDS Human protein_coding chr15:41229671 chr15:41229658 synonymous SNV . 0 8 hm5C_associated_SNPs_36396 0 0 0 0 2 DLL4 chr15:41229616 3'AG 41229616 Downstream 43bp
chr15 41229658 41229658 1 + G A SKCM 41229671 + 41229651 41229691 41 CCCCCAGGGACTCCATGTACCAGTCTGTGTGTTTGATATCA CCCCCAGAGACTCCATGTACCAGTCTGTGTGTTTGATATCA < 41bp 1 0.129934587660837 1 0.231269687414169 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DLL4 ENSG00000128917 CDS Human protein_coding chr15:41229671 chr15:41229658 synonymous SNV . 0 8 hm5C_associated_SNPs_36396 0 0 0 0 2 DLL4 chr15:41229724 5'GT 41229724 Upstream 67bp
chr5 156816240 156816240 1 + G C SKCM 156816259 + 156816239 156816279 41 CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTGAC CCGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTGAC < 41bp 1 0.319691683372262 1 0.620044350624084 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816259 chr5:156816240 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_36397 0 0 0 0 1 CYFIP2 chr5:156816197 3'AG 156816197 Downstream 44bp
chr16 2225900 2225900 1 + C T SKCM 2225897 + 2225877 2225917 41 ACGTCTGGTGGCAGCGTCTACTCCATTGCTGTGACAAATCA ACGTCTGGTGGCAGCGTCTACTCTATTGCTGTGACAAATCA < 41bp 1 0.584756949336774 1 0.650840580463409 experiment 0.830486101326452 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TRAF7 ENSG00000131653 CDS Human protein_coding chr16:2225897 chr16:2225900 synonymous SNV . 0 24 hm5C_associated_SNPs_36398 0 0 1 0 2 TRAF7 chr16:2225835 3'AG 2225835 Downstream 66bp
chr16 2225900 2225900 1 + C T SKCM 2225897 + 2225877 2225917 41 ACGTCTGGTGGCAGCGTCTACTCCATTGCTGTGACAAATCA ACGTCTGGTGGCAGCGTCTACTCTATTGCTGTGACAAATCA < 41bp 1 0.584756949336774 1 0.650840580463409 experiment 0.830486101326452 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TRAF7 ENSG00000131653 CDS Human protein_coding chr16:2225897 chr16:2225900 synonymous SNV . 0 24 hm5C_associated_SNPs_36398 0 0 1 0 2 TRAF7 chr16:2225954 5'GT 2225954 Upstream 55bp
chr1 2421304 2421304 1 + G A SKCM 2421285 + 2421265 2421305 41 GCTGATGAGATTGACGATGACTGCAAGCTCCTCAATGGGGA GCTGATGAGATTGACGATGACTGCAAGCTCCTCAATGGGAA < 41bp 1 0.763672464485219 1 0.139951705932617 experiment 0.472655071029563 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2421285 chr1:2421304 nonsynonymous SNV 0.961 1 40 hm5C_associated_SNPs_36399 0 0 0 0 1 PLCH2 chr1:2421306 5'GT 2421306 Upstream 3bp
chrX 205506 205506 1 + C T SKCM 205500 + 205480 205520 41 AACAAGGCCTTGCCCTGCATCACGCGCCCTGTCGTGCTGAA AACAAGGCCTTGCCCTGCATCACGCGTCCTGTCGTGCTGAA < 41bp 1 0.555457617354387 1 0.278589457273483 experiment 0.889084765291226 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:205500 chrX:205506 synonymous SNV . 0 27 hm5C_associated_SNPs_36402 0 0 1 0 1 PLCXD1 chrX:205536 5'GT 205536 Upstream 31bp
chr11 61507965 61507965 1 + T C SKCM 61507955 + 61507935 61507975 41 CTGCTGTGAGCAGGAGGAGCCCACATACTTTGCCATCTGGG CTGCTGTGAGCAGGAGGAGCCCACATACTTCGCCATCTGGG < 41bp 1 0.131194877937026 1 0.235472828149796 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507955 chr11:61507965 synonymous SNV . 0 31 hm5C_associated_SNPs_36405 0 0 1 0 2 DAGLA chr11:61507935 3'AG 61507935 Downstream 31bp
chr11 61507965 61507965 1 + T C SKCM 61507955 + 61507935 61507975 41 CTGCTGTGAGCAGGAGGAGCCCACATACTTTGCCATCTGGG CTGCTGTGAGCAGGAGGAGCCCACATACTTCGCCATCTGGG < 41bp 1 0.131194877937026 1 0.235472828149796 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507955 chr11:61507965 synonymous SNV . 0 31 hm5C_associated_SNPs_36405 0 0 1 0 2 DAGLA chr11:61508064 5'GT 61508064 Upstream 100bp
chr11 61507965 61507965 1 + T C SKCM 61507980 + 61507960 61508000 41 TACTTTGCCATCTGGGGCGACAACAAGGCCTTCAATGAGGT TACTTCGCCATCTGGGGCGACAACAAGGCCTTCAATGAGGT < 41bp 1 0.169997222827344 1 0.34584105014801 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507980 chr11:61507965 synonymous SNV . 0 6 hm5C_associated_SNPs_36406 0 0 1 0 2 DAGLA chr11:61507935 3'AG 61507935 Downstream 31bp
chr11 61507965 61507965 1 + T C SKCM 61507980 + 61507960 61508000 41 TACTTTGCCATCTGGGGCGACAACAAGGCCTTCAATGAGGT TACTTCGCCATCTGGGGCGACAACAAGGCCTTCAATGAGGT < 41bp 1 0.169997222827344 1 0.34584105014801 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507980 chr11:61507965 synonymous SNV . 0 6 hm5C_associated_SNPs_36406 0 0 1 0 2 DAGLA chr11:61508064 5'GT 61508064 Upstream 100bp
chr15 91358362 91358362 1 + C T SKCM 91358367 + 91358347 91358387 41 TAGAAAGATATCTTCCAAAACGAAATCCTCCAGCATCATTG TAGAAAGATATCTTCTAAAACGAAATCCTCCAGCATCATTG < 41bp 1 0.67407181812671 1 0.0647605359554291 experiment 0.65185636374658 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91358367 chr15:91358362 synonymous SNV . 0 16 hm5C_associated_SNPs_36407 0 0 1 0 1 BLM chr15:91358332 3'AG 91358332 Downstream 31bp
chr14 102805195 102805195 1 + G A SKCM 102805183 + 102805163 102805203 41 CATTAGGAATCACAGAATTCCTACGGAAGAAAGAAATACAC CATTAGGAATCACAGAATTCCTACGGAAGAAAAAAATACAC < 41bp 1 0.465941077865751 1 0.650456547737122 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102805183 chr14:102805195 nonsynonymous SNV 0.001 0 33 hm5C_associated_SNPs_36408 0 0 1 0 2 ZNF839 chr14:102805153 3'AG 102805153 Downstream 43bp
chr14 102805195 102805195 1 + G A SKCM 102805183 + 102805163 102805203 41 CATTAGGAATCACAGAATTCCTACGGAAGAAAGAAATACAC CATTAGGAATCACAGAATTCCTACGGAAGAAAAAAATACAC < 41bp 1 0.465941077865751 1 0.650456547737122 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102805183 chr14:102805195 nonsynonymous SNV 0.001 0 33 hm5C_associated_SNPs_36408 0 0 1 0 2 ZNF839 chr14:102805290 5'GT 102805290 Upstream 96bp
chr7 5338914 5338914 1 + C T SKCM 5338900 + 5338880 5338920 41 TGCACCGCTACGTGGTGGCGCGGGTGATCTGGGCCGACATG TGCACCGCTACGTGGTGGCGCGGGTGATCTGGGCTGACATG < 41bp 1 0.558626695778378 1 0.429721772670746 experiment 0.882746608443243 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5338900 chr7:5338914 synonymous SNV . 0 35 hm5C_associated_SNPs_36409 0 0 0 0 1 SLC29A4 chr7:5338871 3'AG 5338871 Downstream 44bp
chr20 61292522 61292522 1 + G T SKCM 61292526 + 61292506 61292546 41 AAACCATCAGAGACCTGCCTCTGTAAGGACCGGAGTCGGGA AAACCATCAGAGACCTTCCTCTGTAAGGACCGGAGTCGGGA < 41bp 1 0.432289590787765 1 0.284180849790573 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61292526 chr20:61292522 synonymous SNV . 0 17 hm5C_associated_SNPs_36411 0 0 1 1 1 SLCO4A1 chr20:61292527 5'GT 61292527 Upstream 6bp
chr1 44134853 44134853 1 + C T SKCM 44134847 + 44134827 44134867 41 AGGAGGTGAGTCAGAGTGAGCTCTTCCCCAAGGAGGATCTG AGGAGGTGAGTCAGAGTGAGCTCTTCTCCAAGGAGGATCTG < 41bp 1 0.315734456280441 1 0.0305983126163483 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KDM4A ENSG00000066135 CDS Human protein_coding chr1:44134847 chr1:44134853 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_36412 0 0 1 0 1 KDM4A chr1:44134771 3'AG 44134771 Downstream 83bp
chr1 156105739 156105739 1 + C T SKCM 156105721 + 156105701 156105741 41 AAGGAGGCGAAGCTTCGAGACCTGGAGGACTCACTGGCCCG AAGGAGGCGAAGCTTCGAGACCTGGAGGACTCACTGGCTCG < 41bp 1 0.345599582593483 1 0.384909749031067 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156105721 chr1:156105739 synonymous SNV . 0 39 hm5C_associated_SNPs_36413 0 0 1 0 1 LMNA chr1:156105692 3'AG 156105692 Downstream 48bp
chr1 156105739 156105739 1 + C T SKCM 156105730 + 156105710 156105750 41 AAGCTTCGAGACCTGGAGGACTCACTGGCCCGTGAGCGGGA AAGCTTCGAGACCTGGAGGACTCACTGGCTCGTGAGCGGGA < 41bp 1 0.251383066043646 1 0.182772874832153 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156105730 chr1:156105739 synonymous SNV . 0 30 hm5C_associated_SNPs_36414 0 0 1 0 1 LMNA chr1:156105692 3'AG 156105692 Downstream 48bp
chr19 50912809 50912809 1 + C T SKCM 50912807 + 50912787 50912827 41 AGCTGGCCAAGGAGACAGACCCCCTCCGGCGCCAGGTCCTG AGCTGGCCAAGGAGACAGACCCTCTCCGGCGCCAGGTCCTG < 41bp 1 0.0670407826903939 1 0.0188964009284973 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912807 chr19:50912809 synonymous SNV . 0 23 hm5C_associated_SNPs_36415 0 0 1 0 1 POLD1 chr19:50912776 3'AG 50912776 Downstream 34bp
chr19 50912809 50912809 1 + C T SKCM 50912813 + 50912793 50912833 41 CCAAGGAGACAGACCCCCTCCGGCGCCAGGTCCTGGATGGA CCAAGGAGACAGACCCTCTCCGGCGCCAGGTCCTGGATGGA < 41bp 1 0.536885569047588 1 0.774699687957764 experiment 0.926228861904824 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912813 chr19:50912809 synonymous SNV . 0 17 hm5C_associated_SNPs_36416 0 0 1 0 1 POLD1 chr19:50912776 3'AG 50912776 Downstream 34bp
chr2 99156090 99156090 1 + A T SKCM 99156084 + 99156064 99156104 41 GATGGCAGAGAGCGTGCTCTCCCTGCACGTGCCCCGGCAGT GATGGCAGAGAGCGTGCTCTCCCTGCTCGTGCCCCGGCAGT < 41bp 1 0.398479496533737 1 0.229125767946243 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99156084 chr2:99156090 nonsynonymous SNV 0.996 1 27 hm5C_associated_SNPs_36418 0 0 1 0 1 INPP4A chr2:99156138 5'GT 99156138 Upstream 49bp
chr7 94917897 94917897 1 + C T SKCM 94917917 + 94917897 94917937 41 CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA TCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA < 41bp 1 0.583884520839123 1 0.16942498087883 experiment 0.832230958321755 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917917 chr7:94917897 nonsynonymous SNV 0.217 4 1 hm5C_associated_SNPs_36419 0 0 0 0 1 PPP1R9A chr7:94917848 3'AG 94917848 Downstream 50bp
chr2 99156091 99156091 1 + C T SKCM 99156084 + 99156064 99156104 41 GATGGCAGAGAGCGTGCTCTCCCTGCACGTGCCCCGGCAGT GATGGCAGAGAGCGTGCTCTCCCTGCATGTGCCCCGGCAGT < 41bp 1 0.336816737217637 1 0.75275182723999 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99156084 chr2:99156091 synonymous SNV . 0 28 hm5C_associated_SNPs_36420 0 0 1 0 1 INPP4A chr2:99156138 5'GT 99156138 Upstream 48bp
chr1 43917105 43917105 1 - C A SKCM 43917100 - 43917080 43917120 41 GGCTACAAAGGCTTCGTGGGCTGTGAGTATCAGCCTCGAGG GGCTACAAAGGCTTCTTGGGCTGTGAGTATCAGCCTCGAGG < 41bp 1 0.273827045655509 1 0.0380374491214752 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HYI ENSG00000178922 CDS Human protein_coding chr1:43917100 chr1:43917105 nonsynonymous SNV 1.000 0 16 hm5C_associated_SNPs_36422 0 0 0 0 2 HYI chr1:43917081 5'GT 43917081 Upstream 25bp
chr1 43917105 43917105 1 - C A SKCM 43917100 - 43917080 43917120 41 GGCTACAAAGGCTTCGTGGGCTGTGAGTATCAGCCTCGAGG GGCTACAAAGGCTTCTTGGGCTGTGAGTATCAGCCTCGAGG < 41bp 1 0.273827045655509 1 0.0380374491214752 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HYI ENSG00000178922 CDS Human protein_coding chr1:43917100 chr1:43917105 nonsynonymous SNV 1.000 0 16 hm5C_associated_SNPs_36422 0 0 0 0 2 HYI chr1:43917099 5'GT 43917099 Upstream 7bp
chr7 39730142 39730142 1 + T G SKCM 39730145 + 39730125 39730165 41 GAGGGGTTCCTCTGTGTTTTCTCTATTACAGAAATGGAATC GAGGGGTTCCTCTGTGTGTTCTCTATTACAGAAATGGAATC < 41bp 1 0.773452128223105 1 0.884903192520142 experiment 0.453095743553791 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RALA ENSG00000006451 CDS Human protein_coding chr7:39730145 chr7:39730142 synonymous SNV . 0 18 hm5C_associated_SNPs_36424 0 0 1 0 1 RALA chr7:39730189 5'GT 39730189 Upstream 48bp
chr19 16339733 16339733 1 + C T SKCM 16339738 + 16339718 16339758 41 GTGGTCCATCAAGTCCTTCCCGGTGAGCACTCTGTCCAGAC GTGGTCCATCAAGTCTTTCCCGGTGAGCACTCTGTCCAGAC < 41bp 1 0.583987611506527 1 0.464800357818604 experiment 0.832024776986945 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16339738 chr19:16339733 synonymous SNV . 0 16 hm5C_associated_SNPs_36425 0 0 1 0 1 AP1M1 chr19:16339739 5'GT 16339739 Upstream 7bp
chr8 56864640 56864640 1 + T A SKCM 56864624 + 56864604 56864644 41 TAATGGGGGCTATTACATCTCTCCACGAATCACTTTTCCCT TAATGGGGGCTATTACATCTCTCCACGAATCACTTTACCCT < 41bp 1 0.743200843903987 1 0.907264232635498 experiment 0.513598312192026 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56864624 chr8:56864640 nonsynonymous SNV 0.996 4 37 hm5C_associated_SNPs_36426 0 0 1 0 1 LYN chr8:56864674 5'GT 56864674 Upstream 35bp
chr5 112868665 112868665 1 + T G SKCM 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA CGCGGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA < 41bp 1 0.545192790611264 1 0.111478805541992 experiment 0.909614418777472 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868665 synonymous SNV . 0 4 hm5C_associated_SNPs_36427 0 0 1 0 2 YTHDC2 chr5:112868576 3'AG 112868576 Downstream 90bp
chr5 112868665 112868665 1 + T G SKCM 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA CGCGGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA < 41bp 1 0.545192790611264 1 0.111478805541992 experiment 0.909614418777472 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868665 synonymous SNV . 0 4 hm5C_associated_SNPs_36427 0 0 1 0 2 YTHDC2 chr5:112868742 5'GT 112868742 Upstream 78bp
chr5 112868665 112868665 1 + T G SKCM 112868683 + 112868663 112868703 41 GCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT GCGGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT < 41bp 1 0.582540175118331 1 0.744464099407196 experiment 0.834919649763338 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868683 chr5:112868665 synonymous SNV . 0 3 hm5C_associated_SNPs_36428 0 0 1 0 2 YTHDC2 chr5:112868576 3'AG 112868576 Downstream 90bp
chr5 112868665 112868665 1 + T G SKCM 112868683 + 112868663 112868703 41 GCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT GCGGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT < 41bp 1 0.582540175118331 1 0.744464099407196 experiment 0.834919649763338 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868683 chr5:112868665 synonymous SNV . 0 3 hm5C_associated_SNPs_36428 0 0 1 0 2 YTHDC2 chr5:112868742 5'GT 112868742 Upstream 78bp
chr17 65905795 65905795 1 + T G SKCM 65905785 + 65905765 65905805 41 AATAAAAATAGAGCCTGATTCTGAAAAAGATGAGGTAAAAG AATAAAAATAGAGCCTGATTCTGAAAAAGAGGAGGTAAAAG < 41bp 1 0.46827683531106 1 0.664343357086182 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65905785 chr17:65905795 nonsynonymous SNV 0.954 0 31 hm5C_associated_SNPs_36429 0 0 1 0 2 BPTF chr17:65905698 3'AG 65905698 Downstream 98bp
chr17 65905795 65905795 1 + T G SKCM 65905785 + 65905765 65905805 41 AATAAAAATAGAGCCTGATTCTGAAAAAGATGAGGTAAAAG AATAAAAATAGAGCCTGATTCTGAAAAAGAGGAGGTAAAAG < 41bp 1 0.46827683531106 1 0.664343357086182 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65905785 chr17:65905795 nonsynonymous SNV 0.954 0 31 hm5C_associated_SNPs_36429 0 0 1 0 2 BPTF chr17:65905877 5'GT 65905877 Upstream 83bp
chr12 131488809 131488809 1 + T C SKCM 131488791 + 131488771 131488811 41 CTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCC CTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCACCC < 41bp 1 0.0550711872835611 1 0.0649777948856354 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488791 chr12:131488809 nonsynonymous SNV 0.050 3 39 hm5C_associated_SNPs_36431 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 33bp
chr12 131488809 131488809 1 + T C SKCM 131488792 + 131488772 131488812 41 TCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCA TCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCACCCA < 41bp 1 0.246506357161357 1 0.334141671657562 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488792 chr12:131488809 nonsynonymous SNV 0.050 3 38 hm5C_associated_SNPs_36432 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 33bp
chr12 131488809 131488809 1 + T C SKCM 131488793 + 131488773 131488813 41 CCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAG CCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCACCCAG < 41bp 1 0.716657163121534 1 0.732958614826202 experiment 0.566685673756931 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488793 chr12:131488809 nonsynonymous SNV 0.050 3 37 hm5C_associated_SNPs_36433 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 33bp
chr12 131488809 131488809 1 + T C SKCM 131488795 + 131488775 131488815 41 CATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAGAT CATTACCGCTTCCCGGCCCACGGGCAGAGCTTCACCCAGAT < 41bp 1 0.53721476250978 1 0.919541358947754 experiment 0.925570474980439 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488795 chr12:131488809 nonsynonymous SNV 0.050 3 35 hm5C_associated_SNPs_36434 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 33bp
chr12 131488809 131488809 1 + T C SKCM 131488799 + 131488779 131488819 41 ACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAGATCCCC ACCGCTTCCCGGCCCACGGGCAGAGCTTCACCCAGATCCCC < 41bp 1 0.388536638148528 1 0.795200526714325 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488799 chr12:131488809 nonsynonymous SNV 0.050 3 31 hm5C_associated_SNPs_36435 0 0 1 0 1 ADGRD1 chr12:131488841 5'GT 131488841 Upstream 33bp
chr19 14024281 14024281 1 + C T SKCM 14024290 + 14024270 14024310 41 GGACATCCCGCCGCCAGTGGCCATAGGAAAAGGCCCGGCGT GGACATCCCGCTGCCAGTGGCCATAGGAAAAGGCCCGGCGT < 41bp 1 0.225005998851308 1 0.235393166542053 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14024290 chr19:14024281 nonsynonymous SNV 0.007 5 12 hm5C_associated_SNPs_36436 0 0 0 0 1 CC2D1A chr19:14024217 3'AG 14024217 Downstream 65bp
chr5 179025792 179025792 1 + G A SKCM 179025776 + 179025756 179025796 41 ACAGCACGAGAAAGACACTTCCTCTCTACTCAGGATGGAGC ACAGCACGAGAAAGACACTTCCTCTCTACTCAGGATAGAGC < 41bp 1 0.039709915064277 1 0.0746619999408722 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179025776 chr5:179025792 nonsynonymous SNV 0.000 1 37 hm5C_associated_SNPs_36438 0 0 1 0 2 RUFY1 chr5:179025693 3'AG 179025693 Downstream 100bp
chr5 179025792 179025792 1 + G A SKCM 179025776 + 179025756 179025796 41 ACAGCACGAGAAAGACACTTCCTCTCTACTCAGGATGGAGC ACAGCACGAGAAAGACACTTCCTCTCTACTCAGGATAGAGC < 41bp 1 0.039709915064277 1 0.0746619999408722 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179025776 chr5:179025792 nonsynonymous SNV 0.000 1 37 hm5C_associated_SNPs_36438 0 0 1 0 2 RUFY1 chr5:179025822 5'GT 179025822 Upstream 31bp
chr15 40708539 40708539 1 + C A SKCM 40708548 + 40708528 40708568 41 ACACAGGTAGCCCTGGACGGCATTCAGTGTTTTGGTGAGTG ACACAGGTAGCACTGGACGGCATTCAGTGTTTTGGTGAGTG < 41bp 1 0.0388870315828398 1 0.030078649520874 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IVD ENSG00000128928 CDS Human protein_coding chr15:40708548 chr15:40708539 synonymous SNV . 0 12 hm5C_associated_SNPs_36442 0 0 1 0 2 IVD chr15:40708489 3'AG 40708489 Downstream 51bp
chr15 40708539 40708539 1 + C A SKCM 40708548 + 40708528 40708568 41 ACACAGGTAGCCCTGGACGGCATTCAGTGTTTTGGTGAGTG ACACAGGTAGCACTGGACGGCATTCAGTGTTTTGGTGAGTG < 41bp 1 0.0388870315828398 1 0.030078649520874 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IVD ENSG00000128928 CDS Human protein_coding chr15:40708548 chr15:40708539 synonymous SNV . 0 12 hm5C_associated_SNPs_36442 0 0 1 0 2 IVD chr15:40708561 5'GT 40708561 Upstream 23bp
chr10 17271935 17271935 1 + G A SKCM 17271952 + 17271932 17271972 41 GTCGAGGTGGAGCGCGACAACCTGGCCGAGGACATCATGCG GTCAAGGTGGAGCGCGACAACCTGGCCGAGGACATCATGCG < 41bp 1 0.418218691791774 1 0.27867004275322 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17271952 chr10:17271935 nonsynonymous SNV 0.997 5 4 hm5C_associated_SNPs_36443 0 0 1 0 1 VIM chr10:17271984 5'GT 17271984 Upstream 50bp
chr20 2846048 2846048 1 + C T SKCM 2846046 + 2846026 2846066 41 AAGCCCAGCTTTCCTGCAGGCTCTGGTGGCTGAAGCTGACT AAGCCCAGCTTTCCTGCAGGCTTTGGTGGCTGAAGCTGACT < 41bp 1 0.0853939894293214 1 0.0346158146858215 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2846046 chr20:2846048 synonymous SNV . 0 23 hm5C_associated_SNPs_36446 0 0 0 0 2 VPS16 chr20:2846045 3'AG 2846045 Downstream 4bp
chr20 2846048 2846048 1 + C T SKCM 2846046 + 2846026 2846066 41 AAGCCCAGCTTTCCTGCAGGCTCTGGTGGCTGAAGCTGACT AAGCCCAGCTTTCCTGCAGGCTTTGGTGGCTGAAGCTGACT < 41bp 1 0.0853939894293214 1 0.0346158146858215 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2846046 chr20:2846048 synonymous SNV . 0 23 hm5C_associated_SNPs_36446 0 0 0 0 2 VPS16 chr20:2846141 5'GT 2846141 Upstream 94bp
chr10 72324221 72324221 1 + C T SKCM 72324236 + 72324216 72324256 41 TACCTCCACCTGGAGAAGGCCGACTCCTGGCAGAGGCCCTT TACCTTCACCTGGAGAAGGCCGACTCCTGGCAGAGGCCCTT < 41bp 1 0.191579699927972 1 0.440056324005127 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72324236 chr10:72324221 synonymous SNV . 0 6 hm5C_associated_SNPs_36447 0 0 0 0 1 PALD1 chr10:72324275 5'GT 72324275 Upstream 55bp
chr6 36566699 36566699 1 + C T SKCM 36566703 + 36566683 36566723 41 AAATCGTGGCCCACCTCCCTCTTGGGGTCGTCGCCCTCGAG AAATCGTGGCCCACCTTCCTCTTGGGGTCGTCGCCCTCGAG < 41bp 1 0.788702467746281 1 0.398265331983566 experiment 0.422595064507437 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36566703 chr6:36566699 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_36448 0 0 1 0 2 SRSF3 chr6:36566626 3'AG 36566626 Downstream 74bp
chr6 36566699 36566699 1 + C T SKCM 36566703 + 36566683 36566723 41 AAATCGTGGCCCACCTCCCTCTTGGGGTCGTCGCCCTCGAG AAATCGTGGCCCACCTTCCTCTTGGGGTCGTCGCCCTCGAG < 41bp 1 0.788702467746281 1 0.398265331983566 experiment 0.422595064507437 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36566703 chr6:36566699 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_36448 0 0 1 0 2 SRSF3 chr6:36566760 5'GT 36566760 Upstream 62bp
chr17 78201712 78201712 1 + C T SKCM 78201694 + 78201674 78201714 41 GATGCGGGACCACGTGCCTCCCGTCCACCCCGAGATGCCCC GATGCGGGACCACGTGCCTCCCGTCCACCCCGAGATGCTCC < 41bp 1 0.0904639342070273 1 0.62809419631958 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78201694 chr17:78201712 nonsynonymous SNV 0.657 2 39 hm5C_associated_SNPs_36449 0 0 1 0 1 SLC26A11 chr17:78201759 5'GT 78201759 Upstream 48bp
chr4 8294051 8294051 1 + G A SKCM 8294067 + 8294047 8294087 41 GTACGGGAACTCCGGGGGACCACTGGTGAACCTGGTAAGTG GTACAGGAACTCCGGGGGACCACTGGTGAACCTGGTAAGTG < 41bp 1 0.375222014385137 1 0.355164080858231 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8294067 chr4:8294051 nonsynonymous SNV 0.988 5 5 hm5C_associated_SNPs_36451 0 0 0 0 2 HTRA3 chr4:8294048 3'AG 8294048 Downstream 4bp
chr4 8294051 8294051 1 + G A SKCM 8294067 + 8294047 8294087 41 GTACGGGAACTCCGGGGGACCACTGGTGAACCTGGTAAGTG GTACAGGAACTCCGGGGGACCACTGGTGAACCTGGTAAGTG < 41bp 1 0.375222014385137 1 0.355164080858231 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8294067 chr4:8294051 nonsynonymous SNV 0.988 5 5 hm5C_associated_SNPs_36451 0 0 0 0 2 HTRA3 chr4:8294080 5'GT 8294080 Upstream 30bp
chr14 50789412 50789412 1 + C T SKCM 50789396 + 50789376 50789416 41 CAAGATTCAGGCGATCGACGCCACCGACTCTTGTATCATGA CAAGATTCAGGCGATCGACGCCACCGACTCTTGTATTATGA < 41bp 1 0.0746817983433549 1 0.117917776107788 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP5S ENSG00000125375 CDS Human protein_coding chr14:50789396 chr14:50789412 synonymous SNV . 0 37 hm5C_associated_SNPs_36452 0 0 1 0 1 ATP5S chr14:50789437 5'GT 50789437 Upstream 26bp
chr15 69652437 69652437 1 + C T SKCM 69652440 + 69652420 69652460 41 ATGCTGAGCCTGAAGCTCCCCAGGCTGTTTAGCATAGACCA ATGCTGAGCCTGAAGCTTCCCAGGCTGTTTAGCATAGACCA < 41bp 1 0.744156409214353 1 0.826668858528137 experiment 0.511687181571294 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69652440 chr15:69652437 synonymous SNV . 0 18 hm5C_associated_SNPs_36453 0 0 0 0 1 PAQR5 chr15:69652470 5'GT 69652470 Upstream 34bp
chr20 47859199 47859199 1 + C T SKCM 47859198 + 47859178 47859218 41 ACCAACACAAGCAAGAAGGCCCTGAAACAGTATCGAGCTGG ACCAACACAAGCAAGAAGGCCTTGAAACAGTATCGAGCTGG < 41bp 1 0.428224186872008 1 0.250437259674072 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX27 ENSG00000124228 CDS Human protein_coding chr20:47859198 chr20:47859199 synonymous SNV . 0 22 hm5C_associated_SNPs_36454 0 0 1 0 2 DDX27 chr20:47859131 3'AG 47859131 Downstream 69bp
chr20 47859199 47859199 1 + C T SKCM 47859198 + 47859178 47859218 41 ACCAACACAAGCAAGAAGGCCCTGAAACAGTATCGAGCTGG ACCAACACAAGCAAGAAGGCCTTGAAACAGTATCGAGCTGG < 41bp 1 0.428224186872008 1 0.250437259674072 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX27 ENSG00000124228 CDS Human protein_coding chr20:47859198 chr20:47859199 synonymous SNV . 0 22 hm5C_associated_SNPs_36454 0 0 1 0 2 DDX27 chr20:47859218 5'GT 47859218 Upstream 20bp
chr6 46803057 46803057 1 + C T SKCM 46803054 + 46803034 46803074 41 TGAGCCCCCAAGGCCTCATTCTCCAAGGCCAGGAGCAGCAG TGAGCCCCCAAGGCCTCATTCTCTAAGGCCAGGAGCAGCAG < 41bp 1 0.769077221701143 1 0.938896894454956 experiment 0.461845556597714 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MEP1A ENSG00000112818 CDS Human protein_coding chr6:46803054 chr6:46803057 stopgain 0.379 0 24 hm5C_associated_SNPs_36455 0 0 0 0 1 MEP1A chr6:46802986 3'AG 46802986 Downstream 72bp
chr3 183435492 183435492 1 + C T SKCM 183435490 + 183435470 183435510 41 TATTATCAAAGAACAGTTTGCTCTTGAAATGAAGAATAAGG TATTATCAAAGAACAGTTTGCTTTTGAAATGAAGAATAAGG < 41bp 1 0.0179079673728852 1 0.0352792739868164 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183435490 chr3:183435492 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_36456 0 0 1 0 2 YEATS2 chr3:183435439 3'AG 183435439 Downstream 54bp
chr3 183435492 183435492 1 + C T SKCM 183435490 + 183435470 183435510 41 TATTATCAAAGAACAGTTTGCTCTTGAAATGAAGAATAAGG TATTATCAAAGAACAGTTTGCTTTTGAAATGAAGAATAAGG < 41bp 1 0.0179079673728852 1 0.0352792739868164 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183435490 chr3:183435492 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_36456 0 0 1 0 2 YEATS2 chr3:183435536 5'GT 183435536 Upstream 45bp
chr19 11472104 11472104 1 + G A SKCM 11472113 + 11472093 11472133 41 GTGGCCGCCGCGCGCCGCGCCTTCCCCTGCAAGGATGCGGC GTGGCCGCCGCACGCCGCGCCTTCCCCTGCAAGGATGCGGC < 41bp 1 0.107713783318339 1 0.400506019592285 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11472113 chr19:11472104 synonymous SNV . 0 12 hm5C_associated_SNPs_36458 0 0 0 0 1 PLPPR2 chr19:11472164 5'GT 11472164 Upstream 61bp
chr16 70162997 70162997 1 + T A SKCM 70163015 + 70162995 70163035 41 CTTGCCCTGGCAAGTGCTGCCTCCCAAAATGGTGAGCAGGT CTAGCCCTGGCAAGTGCTGCCTCCCAAAATGGTGAGCAGGT < 41bp 1 0.155241243306196 1 0.187673300504684 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70163015 chr16:70162997 synonymous SNV . 0 3 hm5C_associated_SNPs_36459 0 0 1 0 1 PDPR chr16:70163025 5'GT 70163025 Upstream 29bp
chr11 73941314 73941314 1 + C T SKCM 73941327 + 73941307 73941347 41 TTGAAGCCATGTATGGGGACCTTCCTCCTCCAATTATGCTG TTGAAGCTATGTATGGGGACCTTCCTCCTCCAATTATGCTG < 41bp 1 0.0782922389896137 1 0.0289098918437958 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PPME1 ENSG00000214517 CDS Human protein_coding chr11:73941327 chr11:73941314 synonymous SNV . 0 8 hm5C_associated_SNPs_36460 0 0 1 0 1 PPME1 chr11:73941290 3'AG 73941290 Downstream 25bp
chr11 130013326 130013326 1 + G A SKCM 130013308 + 130013288 130013328 41 AGAACCATGGCTATGAGAACCCCACCTACAAATACCTGGAG AGAACCATGGCTATGAGAACCCCACCTACAAATACCTGAAG < 41bp 1 0.127162578656961 1 0.3646599650383 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130013308 chr11:130013326 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_36463 0 0 1 0 1 APLP2 chr11:130013242 3'AG 130013242 Downstream 85bp
chr15 73023728 73023728 1 + C T SKCM 73023743 + 73023723 73023763 41 TTGTGCTGTTCCAGAAAGTCCTCCACTCTGGAATAACATTG TTGTGTTGTTCCAGAAAGTCCTCCACTCTGGAATAACATTG < 41bp 1 0.749881155934019 1 0.765636265277863 experiment 0.500237688131963 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout BBS4 ENSG00000140463 CDS Human protein_coding chr15:73023743 chr15:73023728 nonsynonymous SNV 0.949 0 6 hm5C_associated_SNPs_36464 0 0 1 0 2 BBS4 chr15:73023646 3'AG 73023646 Downstream 83bp
chr15 73023728 73023728 1 + C T SKCM 73023743 + 73023723 73023763 41 TTGTGCTGTTCCAGAAAGTCCTCCACTCTGGAATAACATTG TTGTGTTGTTCCAGAAAGTCCTCCACTCTGGAATAACATTG < 41bp 1 0.749881155934019 1 0.765636265277863 experiment 0.500237688131963 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout BBS4 ENSG00000140463 CDS Human protein_coding chr15:73023743 chr15:73023728 nonsynonymous SNV 0.949 0 6 hm5C_associated_SNPs_36464 0 0 1 0 2 BBS4 chr15:73023798 5'GT 73023798 Upstream 71bp
chr12 82796832 82796832 1 + A G SKCM 82796830 + 82796810 82796850 41 ACTTTGCGAATATTTACCTCCAACTCTGAAATCAAGGGAGT ACTTTGCGAATATTTACCTCCAGCTCTGAAATCAAGGGAGT < 41bp 1 0.354487933520615 1 0.274502158164978 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL25 ENSG00000127720 CDS Human protein_coding chr12:82796830 chr12:82796832 nonsynonymous SNV 0.806 0 23 hm5C_associated_SNPs_36465 0 0 0 0 2 METTL25 chr12:82796762 3'AG 82796762 Downstream 71bp
chr12 82796832 82796832 1 + A G SKCM 82796830 + 82796810 82796850 41 ACTTTGCGAATATTTACCTCCAACTCTGAAATCAAGGGAGT ACTTTGCGAATATTTACCTCCAGCTCTGAAATCAAGGGAGT < 41bp 1 0.354487933520615 1 0.274502158164978 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL25 ENSG00000127720 CDS Human protein_coding chr12:82796830 chr12:82796832 nonsynonymous SNV 0.806 0 23 hm5C_associated_SNPs_36465 0 0 0 0 2 METTL25 chr12:82796909 5'GT 82796909 Upstream 78bp
chr16 30740292 30740292 1 + C T SKCM 30740289 + 30740269 30740309 41 TTTTTCTCTCACCCCCAGGACTCCCTGGAGGAAAAGCGGAA TTTTTCTCTCACCCCCAGGACTCTCTGGAGGAAAAGCGGAA < 41bp 1 0.0248280013904888 1 0.0773354470729828 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30740289 chr16:30740292 synonymous SNV . 0 24 hm5C_associated_SNPs_36471 0 0 1 0 1 SRCAP chr16:30740287 3'AG 30740287 Downstream 6bp
chr16 30740291 30740291 1 + C T SKCM 30740289 + 30740269 30740309 41 TTTTTCTCTCACCCCCAGGACTCCCTGGAGGAAAAGCGGAA TTTTTCTCTCACCCCCAGGACTTCCTGGAGGAAAAGCGGAA < 41bp 1 0.0191562675017389 1 0.0670580863952637 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30740289 chr16:30740291 nonsynonymous SNV 0.956 2 23 hm5C_associated_SNPs_36474 0 0 1 0 1 SRCAP chr16:30740287 3'AG 30740287 Downstream 5bp
chr7 66489949 66489949 1 + A G SKCM 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGGACCATCAGAGCCTGAATTCCATT < 41bp 1 0.423521120328658 1 0.157021075487137 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489949 synonymous SNV . 0 32 hm5C_associated_SNPs_36475 0 0 0 0 2 TYW1 chr7:66489887 3'AG 66489887 Downstream 63bp
chr7 66489949 66489949 1 + A G SKCM 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGGACCATCAGAGCCTGAATTCCATT < 41bp 1 0.423521120328658 1 0.157021075487137 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489949 synonymous SNV . 0 32 hm5C_associated_SNPs_36475 0 0 0 0 2 TYW1 chr7:66490009 5'GT 66490009 Upstream 61bp
chr7 99159542 99159542 1 + C T SKCM 99159535 + 99159515 99159555 41 ACCTGTTCCTCAGGTGCCTGCTCTTCCCCGTGAGGGAAGCC ACCTGTTCCTCAGGTGCCTGCTCTTCCTCGTGAGGGAAGCC < 41bp 1 0.189378775734255 1 0.0975724458694458 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF655 ENSG00000197343 CDS Human protein_coding chr7:99159535 chr7:99159542 synonymous SNV . 0 28 hm5C_associated_SNPs_36476 0 0 1 0 2 ZNF655 chr7:99159511 3'AG 99159511 Downstream 32bp
chr7 99159542 99159542 1 + C T SKCM 99159535 + 99159515 99159555 41 ACCTGTTCCTCAGGTGCCTGCTCTTCCCCGTGAGGGAAGCC ACCTGTTCCTCAGGTGCCTGCTCTTCCTCGTGAGGGAAGCC < 41bp 1 0.189378775734255 1 0.0975724458694458 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF655 ENSG00000197343 CDS Human protein_coding chr7:99159535 chr7:99159542 synonymous SNV . 0 28 hm5C_associated_SNPs_36476 0 0 1 0 2 ZNF655 chr7:99159596 5'GT 99159596 Upstream 55bp
chr22 41735146 41735146 1 + C T SKCM 41735129 + 41735109 41735149 41 AGGACCCTCCCCAGCACCGACAGCCTGGATGACTTCTCAGA AGGACCCTCCCCAGCACCGACAGCCTGGATGACTTCTTAGA < 41bp 1 0.207146828541122 1 0.220252305269241 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41735129 chr22:41735146 nonsynonymous SNV 0.987 0 38 hm5C_associated_SNPs_36478 0 0 1 0 1 ZC3H7B chr22:41735195 5'GT 41735195 Upstream 50bp
chr2 171822317 171822317 1 + T C SKCM 171822305 + 171822285 171822325 41 CCGTTTTTGTCCTAGGTCTGCCACCTCTTCCTTCCATGCCT CCGTTTTTGTCCTAGGTCTGCCACCTCTTCCTCCCATGCCT < 41bp 1 0.12973163091262 1 0.0545580387115479 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171822305 chr2:171822317 nonsynonymous SNV 0.952 0 33 hm5C_associated_SNPs_36481 0 0 1 0 1 GORASP2 chr2:171822300 3'AG 171822300 Downstream 18bp
chr2 171822316 171822316 1 + T C SKCM 171822305 + 171822285 171822325 41 CCGTTTTTGTCCTAGGTCTGCCACCTCTTCCTTCCATGCCT CCGTTTTTGTCCTAGGTCTGCCACCTCTTCCCTCCATGCCT < 41bp 1 0.118657389400599 1 0.0574448704719543 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171822305 chr2:171822316 synonymous SNV . 0 32 hm5C_associated_SNPs_36482 0 0 1 0 1 GORASP2 chr2:171822300 3'AG 171822300 Downstream 17bp
chr2 113243522 113243522 1 + G T SKCM 113243539 + 113243519 113243559 41 GGTGAATTACTACAGGGGTGCTGACAAACTGTGTCGCAAAG GGTTAATTACTACAGGGGTGCTGACAAACTGTGTCGCAAAG < 41bp 1 0.236716745935331 1 0.166582256555557 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113243539 chr2:113243522 synonymous SNV . 0 4 hm5C_associated_SNPs_36483 0 0 1 0 2 TTL chr2:113243494 3'AG 113243494 Downstream 29bp
chr2 113243522 113243522 1 + G T SKCM 113243539 + 113243519 113243559 41 GGTGAATTACTACAGGGGTGCTGACAAACTGTGTCGCAAAG GGTTAATTACTACAGGGGTGCTGACAAACTGTGTCGCAAAG < 41bp 1 0.236716745935331 1 0.166582256555557 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113243539 chr2:113243522 synonymous SNV . 0 4 hm5C_associated_SNPs_36483 0 0 1 0 2 TTL chr2:113243572 5'GT 113243572 Upstream 51bp
chr6 31601235 31601235 1 + C T SKCM 31601218 + 31601198 31601238 41 CCCACCTCCCAGCAGTTCTGCTGTCTTCCGCCTGGACCAAG CCCACCTCCCAGCAGTTCTGCTGTCTTCCGCCTGGACTAAG < 41bp 1 0.295704661126136 1 0.13575553894043 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31601218 chr6:31601235 stopgain 1.000 0 38 hm5C_associated_SNPs_36484 0 0 1 0 1 PRRC2A chr6:31601156 3'AG 31601156 Downstream 80bp
chr3 155629027 155629027 1 + C T SKCM 155629040 + 155629020 155629060 41 AGCCAGTCTGTTGAAGAGGCCCTCAAAAAGCTTGGAATTCA AGCCAGTTTGTTGAAGAGGCCCTCAAAAAGCTTGGAATTCA < 41bp 1 0.135735319195187 1 0.0410372316837311 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GMPS ENSG00000163655 CDS Human protein_coding chr3:155629040 chr3:155629027 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_36485 0 0 1 0 1 GMPS chr3:155629068 5'GT 155629068 Upstream 42bp
chr7 142458471 142458471 1 + C T SKCM 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCTC < 41bp 1 0.434412298824804 1 0.368430912494659 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458471 nonsynonymous SNV 0.908 4 40 hm5C_associated_SNPs_36486 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 66bp
chr7 142458471 142458471 1 + C T SKCM 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCTC < 41bp 1 0.434412298824804 1 0.368430912494659 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458471 nonsynonymous SNV 0.908 4 40 hm5C_associated_SNPs_36486 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 95bp
chr7 142458471 142458471 1 + C T SKCM 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTCTCCTACCAGGTGTCCC < 41bp 1 0.200416333094803 1 0.11750802397728 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458471 nonsynonymous SNV 0.908 4 26 hm5C_associated_SNPs_36487 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 66bp
chr7 142458471 142458471 1 + C T SKCM 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTCTCCTACCAGGTGTCCC < 41bp 1 0.200416333094803 1 0.11750802397728 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458471 nonsynonymous SNV 0.908 4 26 hm5C_associated_SNPs_36487 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 95bp
chr7 142458471 142458471 1 + C T SKCM 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTCTCCTACCAGGTGTCCCTGAA < 41bp 1 0.319507510694068 1 0.838317275047302 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458471 nonsynonymous SNV 0.908 4 22 hm5C_associated_SNPs_36488 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 66bp
chr7 142458471 142458471 1 + C T SKCM 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTCTCCTACCAGGTGTCCCTGAA < 41bp 1 0.319507510694068 1 0.838317275047302 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458471 nonsynonymous SNV 0.908 4 22 hm5C_associated_SNPs_36488 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 95bp
chr7 142458471 142458471 1 + C T SKCM 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTCTCCTACCAGGTGTCCCTGAATT < 41bp 1 0.020505882293127 1 0.245990037918091 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458471 nonsynonymous SNV 0.908 4 20 hm5C_associated_SNPs_36489 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 66bp
chr7 142458471 142458471 1 + C T SKCM 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTCTCCTACCAGGTGTCCCTGAATT < 41bp 1 0.020505882293127 1 0.245990037918091 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458471 nonsynonymous SNV 0.908 4 20 hm5C_associated_SNPs_36489 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 95bp
chr7 142458471 142458471 1 + C T SKCM 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTCTCCTACCAGGTGTCCCTGAATTC < 41bp 1 0.147625327988905 1 0.0702512860298157 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458471 nonsynonymous SNV 0.908 4 19 hm5C_associated_SNPs_36490 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 66bp
chr7 142458471 142458471 1 + C T SKCM 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTCTCCTACCAGGTGTCCCTGAATTC < 41bp 1 0.147625327988905 1 0.0702512860298157 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458471 nonsynonymous SNV 0.908 4 19 hm5C_associated_SNPs_36490 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 95bp
chr7 142458471 142458471 1 + C T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCTCCTACCAGGTGTCCCTGAATTCTGG < 41bp 1 0.22917564023444 1 0.466945767402649 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458471 nonsynonymous SNV 0.908 4 16 hm5C_associated_SNPs_36491 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 66bp
chr7 142458471 142458471 1 + C T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCTCCTACCAGGTGTCCCTGAATTCTGG < 41bp 1 0.22917564023444 1 0.466945767402649 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458471 nonsynonymous SNV 0.908 4 16 hm5C_associated_SNPs_36491 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 95bp
chr7 142458471 142458471 1 + C T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCTCCTACCAGGTGTCCCTGAATTCTGGC < 41bp 1 0.614567581173859 1 0.860414266586304 experiment 0.770864837652282 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458471 nonsynonymous SNV 0.908 4 15 hm5C_associated_SNPs_36492 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 66bp
chr7 142458471 142458471 1 + C T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCTCCTACCAGGTGTCCCTGAATTCTGGC < 41bp 1 0.614567581173859 1 0.860414266586304 experiment 0.770864837652282 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458471 nonsynonymous SNV 0.908 4 15 hm5C_associated_SNPs_36492 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 95bp
chr7 142458471 142458471 1 + C T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCTCCTACCAGGTGTCCCTGAATTCTGGCTACCACT < 41bp 1 0.115430428604479 1 0.0681987702846527 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458471 nonsynonymous SNV 0.908 4 8 hm5C_associated_SNPs_36493 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 66bp
chr7 142458471 142458471 1 + C T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCTCCTACCAGGTGTCCCTGAATTCTGGCTACCACT < 41bp 1 0.115430428604479 1 0.0681987702846527 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458471 nonsynonymous SNV 0.908 4 8 hm5C_associated_SNPs_36493 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 95bp
chr7 142458471 142458471 1 + C T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCTCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT < 41bp 1 0.286101994815652 1 0.101932346820831 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458471 nonsynonymous SNV 0.908 4 7 hm5C_associated_SNPs_36494 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 66bp
chr7 142458471 142458471 1 + C T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCTCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT < 41bp 1 0.286101994815652 1 0.101932346820831 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458471 nonsynonymous SNV 0.908 4 7 hm5C_associated_SNPs_36494 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 95bp
chr7 142458471 142458471 1 + C T SKCM 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCTCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC < 41bp 1 0.727683198747695 1 0.446727961301804 experiment 0.54463360250461 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458471 nonsynonymous SNV 0.908 4 6 hm5C_associated_SNPs_36495 0 0 0 0 2 PRSS1 chr7:142458406 3'AG 142458406 Downstream 66bp
chr7 142458471 142458471 1 + C T SKCM 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCTCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC < 41bp 1 0.727683198747695 1 0.446727961301804 experiment 0.54463360250461 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458471 nonsynonymous SNV 0.908 4 6 hm5C_associated_SNPs_36495 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 95bp
chr22 32445953 32445953 1 + G A SKCM 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGAACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT < 41bp 1 0.264597301395433 1 0.23611119389534 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445953 synonymous SNV . 0 3 hm5C_associated_SNPs_36496 0 0 0 0 2 SLC5A1 chr22:32445930 3'AG 32445930 Downstream 24bp
chr22 32445953 32445953 1 + G A SKCM 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGAACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT < 41bp 1 0.264597301395433 1 0.23611119389534 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445953 synonymous SNV . 0 3 hm5C_associated_SNPs_36496 0 0 0 0 2 SLC5A1 chr22:32446001 5'GT 32446001 Upstream 49bp
chr3 184042702 184042702 1 + G A SKCM 184042684 + 184042664 184042704 41 AGGCAGAGGAACGAGGACGCCTGAAGGAAGAGCTGGAAGAG AGGCAGAGGAACGAGGACGCCTGAAGGAAGAGCTGGAAAAG < 41bp 1 0.774631572412855 1 0.581802427768707 experiment 0.450736855174289 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042684 chr3:184042702 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_36497 0 0 1 0 1 EIF4G1 chr3:184042666 3'AG 184042666 Downstream 37bp
chr17 4797353 4797353 1 + C T SKCM 4797354 + 4797334 4797374 41 GGAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCA GGAGATCACCGGGACCCAGTCCCCATACGGGGGCGGCACCA < 41bp 1 0.590274826542014 1 0.847155570983887 experiment 0.819450346915971 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797354 chr17:4797353 nonsynonymous SNV 0.958 0 20 hm5C_associated_SNPs_36498 0 0 1 0 2 MINK1 chr17:4797283 3'AG 4797283 Downstream 71bp
chr17 4797353 4797353 1 + C T SKCM 4797354 + 4797334 4797374 41 GGAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCA GGAGATCACCGGGACCCAGTCCCCATACGGGGGCGGCACCA < 41bp 1 0.590274826542014 1 0.847155570983887 experiment 0.819450346915971 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797354 chr17:4797353 nonsynonymous SNV 0.958 0 20 hm5C_associated_SNPs_36498 0 0 1 0 2 MINK1 chr17:4797388 5'GT 4797388 Upstream 36bp
chr17 4797353 4797353 1 + C T SKCM 4797355 + 4797335 4797375 41 GAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCAT GAGATCACCGGGACCCAGTCCCCATACGGGGGCGGCACCAT < 41bp 1 0.0741695341049198 1 0.751321911811829 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797355 chr17:4797353 nonsynonymous SNV 0.958 0 19 hm5C_associated_SNPs_36499 0 0 1 0 2 MINK1 chr17:4797283 3'AG 4797283 Downstream 71bp
chr17 4797353 4797353 1 + C T SKCM 4797355 + 4797335 4797375 41 GAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCAT GAGATCACCGGGACCCAGTCCCCATACGGGGGCGGCACCAT < 41bp 1 0.0741695341049198 1 0.751321911811829 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797355 chr17:4797353 nonsynonymous SNV 0.958 0 19 hm5C_associated_SNPs_36499 0 0 1 0 2 MINK1 chr17:4797388 5'GT 4797388 Upstream 36bp
chr17 4797353 4797353 1 + C T SKCM 4797356 + 4797336 4797376 41 AGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCATG AGATCACCGGGACCCAGTCCCCATACGGGGGCGGCACCATG < 41bp 1 0.138173157790719 1 0.2105892598629 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797356 chr17:4797353 nonsynonymous SNV 0.958 0 18 hm5C_associated_SNPs_36500 0 0 1 0 2 MINK1 chr17:4797283 3'AG 4797283 Downstream 71bp
chr17 4797353 4797353 1 + C T SKCM 4797356 + 4797336 4797376 41 AGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCATG AGATCACCGGGACCCAGTCCCCATACGGGGGCGGCACCATG < 41bp 1 0.138173157790719 1 0.2105892598629 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797356 chr17:4797353 nonsynonymous SNV 0.958 0 18 hm5C_associated_SNPs_36500 0 0 1 0 2 MINK1 chr17:4797388 5'GT 4797388 Upstream 36bp
chr17 4797353 4797353 1 + C T SKCM 4797357 + 4797337 4797377 41 GATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCATGG GATCACCGGGACCCAGTCCCCATACGGGGGCGGCACCATGG < 41bp 1 0.171020772213633 1 0.413295984268188 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797357 chr17:4797353 nonsynonymous SNV 0.958 0 17 hm5C_associated_SNPs_36501 0 0 1 0 2 MINK1 chr17:4797283 3'AG 4797283 Downstream 71bp
chr17 4797353 4797353 1 + C T SKCM 4797357 + 4797337 4797377 41 GATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCATGG GATCACCGGGACCCAGTCCCCATACGGGGGCGGCACCATGG < 41bp 1 0.171020772213633 1 0.413295984268188 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797357 chr17:4797353 nonsynonymous SNV 0.958 0 17 hm5C_associated_SNPs_36501 0 0 1 0 2 MINK1 chr17:4797388 5'GT 4797388 Upstream 36bp
chr17 4797353 4797353 1 + C T SKCM 4797367 + 4797347 4797387 41 ACCCAGCCCCCATACGGGGGCGGCACCATGGTGGTCCAGCG ACCCAGTCCCCATACGGGGGCGGCACCATGGTGGTCCAGCG < 41bp 1 0.431597919530554 1 0.250224709510803 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797367 chr17:4797353 nonsynonymous SNV 0.958 0 7 hm5C_associated_SNPs_36502 0 0 1 0 2 MINK1 chr17:4797283 3'AG 4797283 Downstream 71bp
chr17 4797353 4797353 1 + C T SKCM 4797367 + 4797347 4797387 41 ACCCAGCCCCCATACGGGGGCGGCACCATGGTGGTCCAGCG ACCCAGTCCCCATACGGGGGCGGCACCATGGTGGTCCAGCG < 41bp 1 0.431597919530554 1 0.250224709510803 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797367 chr17:4797353 nonsynonymous SNV 0.958 0 7 hm5C_associated_SNPs_36502 0 0 1 0 2 MINK1 chr17:4797388 5'GT 4797388 Upstream 36bp
chr2 171822318 171822318 1 + C T SKCM 171822305 + 171822285 171822325 41 CCGTTTTTGTCCTAGGTCTGCCACCTCTTCCTTCCATGCCT CCGTTTTTGTCCTAGGTCTGCCACCTCTTCCTTTCATGCCT < 41bp 1 0.126908342396143 1 0.186436146497726 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171822305 chr2:171822318 nonsynonymous SNV 0.964 1 34 hm5C_associated_SNPs_36505 0 0 1 0 1 GORASP2 chr2:171822300 3'AG 171822300 Downstream 19bp
chr22 41924005 41924005 1 + G A SKCM 41924003 + 41923983 41924023 41 ACAAGCTGACCATTCAGGGCCTGAAGGACTTCACCCCTGGC ACAAGCTGACCATTCAGGGCCTAAAGGACTTCACCCCTGGC < 41bp 1 0.408190871653529 1 0.273971557617188 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41924003 chr22:41924005 synonymous SNV . 0 23 hm5C_associated_SNPs_36506 0 0 1 0 1 ACO2 chr22:41924026 5'GT 41924026 Upstream 22bp
chr12 110457005 110457005 1 + C T SKCM 110457008 + 110456988 110457028 41 GTCACCACCGAACGCTTCGACCTTTCCCAAGAAATGGAGCG GTCACCACCGAACGCTTTGACCTTTCCCAAGAAATGGAGCG < 41bp 1 0.0224049450839576 1 0.0860740542411804 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110457008 chr12:110457005 synonymous SNV . 0 18 hm5C_associated_SNPs_36507 0 0 1 1 1 ANKRD13A chr12:110456944 3'AG 110456944 Downstream 62bp
chr10 24817000 24817000 1 + G A SKCM 24816988 + 24816968 24817008 41 CAATACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTG CAATACCAAATCTGGAGATGCCGCCAGCCACAAGCCCACTG < 41bp 1 0.143944478989609 1 0.0984247922897339 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816988 chr10:24817000 nonsynonymous SNV 0.002 0 33 hm5C_associated_SNPs_36508 0 0 1 0 1 KIAA1217 chr10:24817048 5'GT 24817048 Upstream 49bp
chr10 24817000 24817000 1 + G A SKCM 24816992 + 24816972 24817012 41 ACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTGCCAA ACCAAATCTGGAGATGCCGCCAGCCACAAGCCCACTGCCAA < 41bp 1 0.222668428659934 1 0.685711979866028 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816992 chr10:24817000 nonsynonymous SNV 0.002 0 29 hm5C_associated_SNPs_36509 0 0 1 0 1 KIAA1217 chr10:24817048 5'GT 24817048 Upstream 49bp
chr10 12162807 12162807 1 + C T SKCM 12162801 + 12162781 12162821 41 TATAGCTCCGTCTGGTGGGCCGGCCCCCTTTGCCAGTACCC TATAGCTCCGTCTGGTGGGCCGGCCCTCTTTGCCAGTACCC < 41bp 1 0.197946506081859 1 0.650230348110199 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12162801 chr10:12162807 nonsynonymous SNV 0.982 0 27 hm5C_associated_SNPs_36513 0 0 1 0 1 DHTKD1 chr10:12162786 3'AG 12162786 Downstream 22bp
chr7 142460305 142460305 1 + T C SKCM 142460286 + 142460266 142460306 41 TTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTG TTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGCG < 41bp 1 0.112142306665799 1 0.310750663280487 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460286 chr7:142460305 nonsynonymous SNV 0.050 5 40 hm5C_associated_SNPs_36515 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 24bp
chr7 142460305 142460305 1 + T C SKCM 142460289 + 142460269 142460309 41 CTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCT CTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGCGCCT < 41bp 1 0.151295451918463 1 0.3860142827034 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460289 chr7:142460305 nonsynonymous SNV 0.050 5 37 hm5C_associated_SNPs_36516 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 24bp
chr7 142460305 142460305 1 + T C SKCM 142460290 + 142460270 142460310 41 TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTG TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGCGCCTG < 41bp 1 0.489533200467484 1 0.410413950681686 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460290 chr7:142460305 nonsynonymous SNV 0.050 5 36 hm5C_associated_SNPs_36517 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 24bp
chr7 142460305 142460305 1 + T C SKCM 142460291 + 142460271 142460311 41 GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGG GATCCTCACAGCCGACTACCCAGACGAGCTGCAGCGCCTGG < 41bp 1 0.448884647004556 1 0.58944833278656 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460291 chr7:142460305 nonsynonymous SNV 0.050 5 35 hm5C_associated_SNPs_36518 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 24bp
chr7 142460305 142460305 1 + T C SKCM 142460295 + 142460275 142460315 41 CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGC CTCACAGCCGACTACCCAGACGAGCTGCAGCGCCTGGATGC < 41bp 1 0.455081406173557 1 0.350824117660522 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460295 chr7:142460305 nonsynonymous SNV 0.050 5 31 hm5C_associated_SNPs_36519 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 24bp
chr7 142460305 142460305 1 + T C SKCM 142460299 + 142460279 142460319 41 CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT CAGCCGACTACCCAGACGAGCTGCAGCGCCTGGATGCTCCT < 41bp 1 0.607626216529113 1 0.260604619979858 experiment 0.784747566941773 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460299 chr7:142460305 nonsynonymous SNV 0.050 5 27 hm5C_associated_SNPs_36520 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 24bp
chr7 142460305 142460305 1 + T C SKCM 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGACGAGCTGCAGCGCCTGGATGCTCCTGTG < 41bp 1 0.495339439492439 1 0.145523816347122 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460305 nonsynonymous SNV 0.050 5 24 hm5C_associated_SNPs_36521 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 24bp
chr7 142460305 142460305 1 + T C SKCM 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGCGCCTGGATGCTCCTGTGCTGAG < 41bp 1 0.226577104231352 1 0.121395438909531 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460305 nonsynonymous SNV 0.050 5 19 hm5C_associated_SNPs_36522 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 24bp
chr7 142460305 142460305 1 + T C SKCM 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGCGCCTGGATGCTCCTGTGCTGAGCCAGGCTA < 41bp 1 0.452810551139431 1 0.224191069602966 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460305 nonsynonymous SNV 0.050 5 11 hm5C_associated_SNPs_36523 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 24bp
chr7 142460305 142460305 1 + T C SKCM 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGCGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG < 41bp 1 0.220720658307164 1 0.19335475564003 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460305 nonsynonymous SNV 0.050 5 9 hm5C_associated_SNPs_36524 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 24bp
chr7 142460305 142460305 1 + T C SKCM 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGCGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT < 41bp 1 0.449862783850093 1 0.222113102674484 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460305 nonsynonymous SNV 0.050 5 8 hm5C_associated_SNPs_36525 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 24bp
chr7 142460305 142460305 1 + T C SKCM 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGCGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA < 41bp 1 0.44726807306647 1 0.058578759431839 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460305 nonsynonymous SNV 0.050 5 3 hm5C_associated_SNPs_36526 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 24bp
chr4 38055922 38055922 1 + C T SKCM 38055933 + 38055913 38055953 41 AGTAGCCACCCCGCAGAAGGCGTGCGATTCTTCCAGCAGAT AGTAGCCACTCCGCAGAAGGCGTGCGATTCTTCCAGCAGAT < 41bp 1 0.391496298100445 1 0.346759796142578 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBC1D1 ENSG00000065882 CDS Human protein_coding chr4:38055933 chr4:38055922 synonymous SNV . 0 10 hm5C_associated_SNPs_36528 0 0 0 0 1 TBC1D1 chr4:38055959 5'GT 38055959 Upstream 38bp
chr17 21215556 21215556 1 + C T SKCM 21215563 + 21215543 21215583 41 GCTCCCAGCCGACCGTTTCTCCCCCGAGTTTGTGGACTTCA GCTCCCAGCCGACTGTTTCTCCCCCGAGTTTGTGGACTTCA < 41bp 1 0.281681579236237 1 0.0679494440555573 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21215563 chr17:21215556 nonsynonymous SNV 0.468 3 14 hm5C_associated_SNPs_36529 0 0 0 0 1 MAP2K3 chr17:21215593 5'GT 21215593 Upstream 38bp
chr2 64118256 64118256 1 + A G SKCM 64118258 + 64118238 64118278 41 TTTCCCTGTCACTTAGGGAACGGTTATCATCATTGCAAATC TTTCCCTGTCACTTAGGGGACGGTTATCATCATTGCAAATC < 41bp 1 0.281893001589199 1 0.0305889844894409 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UGP2 ENSG00000169764 CDS Human protein_coding chr2:64118258 chr2:64118256 synonymous SNV . 0 19 hm5C_associated_SNPs_36530 0 0 0 0 1 UGP2 chr2:64118254 3'AG 64118254 Downstream 3bp
chr17 21215555 21215555 1 + C T SKCM 21215563 + 21215543 21215583 41 GCTCCCAGCCGACCGTTTCTCCCCCGAGTTTGTGGACTTCA GCTCCCAGCCGATCGTTTCTCCCCCGAGTTTGTGGACTTCA < 41bp 1 0.281529015626569 1 0.0602686107158661 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21215563 chr17:21215555 synonymous SNV . 0 13 hm5C_associated_SNPs_36531 0 0 0 0 1 MAP2K3 chr17:21215593 5'GT 21215593 Upstream 39bp
chr11 65561697 65561697 1 + G A SKCM 65561686 + 65561666 65561706 41 CACTTGACAGACCCCCAGAGCAGAGACCATGGCTTCCTGCG CACTTGACAGACCCCCAGAGCAGAGACCATGACTTCCTGCG < 41bp 1 0.436249031117089 1 0.733706831932068 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient OVOL1 ENSG00000172818 CDS Human protein_coding chr11:65561686 chr11:65561697 nonsynonymous SNV 0.997 0 32 hm5C_associated_SNPs_36533 0 0 1 0 1 OVOL1 chr11:65561719 5'GT 65561719 Upstream 23bp
chr7 36492118 36492118 1 + G C SKCM 36492117 + 36492097 36492137 41 CTGCAGATACTAAAGAAGAGCGGGATCTCTGGATGCAAAAA CTGCAGATACTAAAGAAGAGCCGGATCTCTGGATGCAAAAA < 41bp 1 0.465180339226284 1 0.266380310058594 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36492117 chr7:36492118 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_36535 0 0 1 0 1 ANLN chr7:36492086 3'AG 36492086 Downstream 33bp
chr19 40715033 40715033 1 + C G SKCM 40715040 + 40715020 40715060 41 TAAGATCACAGTCCAGGCCTCTCCAACTCTGGATAAGCGGA TAAGATCACAGTCGAGGCCTCTCCAACTCTGGATAAGCGGA < 41bp 1 0.267056159841447 1 0.92436957359314 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40715040 chr19:40715033 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_36536 0 0 0 0 2 MAP3K10 chr19:40715010 3'AG 40715010 Downstream 24bp
chr19 40715033 40715033 1 + C G SKCM 40715040 + 40715020 40715060 41 TAAGATCACAGTCCAGGCCTCTCCAACTCTGGATAAGCGGA TAAGATCACAGTCGAGGCCTCTCCAACTCTGGATAAGCGGA < 41bp 1 0.267056159841447 1 0.92436957359314 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40715040 chr19:40715033 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_36536 0 0 0 0 2 MAP3K10 chr19:40715126 5'GT 40715126 Upstream 94bp
chr10 51863872 51863872 1 + T C SKCM 51863880 + 51863860 51863900 41 AGCTCCCCACGTTGGTTTCCCTGTTTGATGATGAAGATGAA AGCTCCCCACGTCGGTTTCCCTGTTTGATGATGAAGATGAA < 41bp 1 0.133951376084225 1 0.134731590747833 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WASHC2A ENSG00000099290 CDS Human protein_coding chr10:51863880 chr10:51863872 nonsynonymous SNV 0.002 0 13 hm5C_associated_SNPs_36537 0 0 1 0 2 WASHC2A chr10:51863802 3'AG 51863802 Downstream 71bp
chr10 51863872 51863872 1 + T C SKCM 51863880 + 51863860 51863900 41 AGCTCCCCACGTTGGTTTCCCTGTTTGATGATGAAGATGAA AGCTCCCCACGTCGGTTTCCCTGTTTGATGATGAAGATGAA < 41bp 1 0.133951376084225 1 0.134731590747833 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WASHC2A ENSG00000099290 CDS Human protein_coding chr10:51863880 chr10:51863872 nonsynonymous SNV 0.002 0 13 hm5C_associated_SNPs_36537 0 0 1 0 2 WASHC2A chr10:51863903 5'GT 51863903 Upstream 32bp
chr17 55194237 55194237 1 + C A SKCM 55194240 + 55194220 55194260 41 GGTCTGACTTTGTCACCCTGCCGTTTCAGGGAGCAGAAGTC GGTCTGACTTTGTCACCATGCCGTTTCAGGGAGCAGAAGTC < 41bp 1 0.080167237333456 1 0.217909842729568 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194240 chr17:55194237 nonsynonymous SNV 0.997 4 18 hm5C_associated_SNPs_36538 0 0 1 0 2 AKAP1 chr17:55194221 3'AG 55194221 Downstream 17bp
chr17 55194237 55194237 1 + C A SKCM 55194240 + 55194220 55194260 41 GGTCTGACTTTGTCACCCTGCCGTTTCAGGGAGCAGAAGTC GGTCTGACTTTGTCACCATGCCGTTTCAGGGAGCAGAAGTC < 41bp 1 0.080167237333456 1 0.217909842729568 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194240 chr17:55194237 nonsynonymous SNV 0.997 4 18 hm5C_associated_SNPs_36538 0 0 1 0 2 AKAP1 chr17:55194288 5'GT 55194288 Upstream 52bp
chr17 55194237 55194237 1 + C A SKCM 55194241 + 55194221 55194261 41 GTCTGACTTTGTCACCCTGCCGTTTCAGGGAGCAGAAGTCC GTCTGACTTTGTCACCATGCCGTTTCAGGGAGCAGAAGTCC < 41bp 1 0.0563604776175547 1 0.0478800535202026 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194241 chr17:55194237 nonsynonymous SNV 0.997 4 17 hm5C_associated_SNPs_36539 0 0 1 0 2 AKAP1 chr17:55194221 3'AG 55194221 Downstream 17bp
chr17 55194237 55194237 1 + C A SKCM 55194241 + 55194221 55194261 41 GTCTGACTTTGTCACCCTGCCGTTTCAGGGAGCAGAAGTCC GTCTGACTTTGTCACCATGCCGTTTCAGGGAGCAGAAGTCC < 41bp 1 0.0563604776175547 1 0.0478800535202026 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194241 chr17:55194237 nonsynonymous SNV 0.997 4 17 hm5C_associated_SNPs_36539 0 0 1 0 2 AKAP1 chr17:55194288 5'GT 55194288 Upstream 52bp
chr17 55194237 55194237 1 + C A SKCM 55194253 + 55194233 55194273 41 CACCCTGCCGTTTCAGGGAGCAGAAGTCCTTCTGGACAGTG CACCATGCCGTTTCAGGGAGCAGAAGTCCTTCTGGACAGTG < 41bp 1 0.532145928092293 1 0.484088659286499 experiment 0.935708143815414 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194253 chr17:55194237 nonsynonymous SNV 0.997 4 5 hm5C_associated_SNPs_36540 0 0 1 0 2 AKAP1 chr17:55194221 3'AG 55194221 Downstream 17bp
chr17 55194237 55194237 1 + C A SKCM 55194253 + 55194233 55194273 41 CACCCTGCCGTTTCAGGGAGCAGAAGTCCTTCTGGACAGTG CACCATGCCGTTTCAGGGAGCAGAAGTCCTTCTGGACAGTG < 41bp 1 0.532145928092293 1 0.484088659286499 experiment 0.935708143815414 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194253 chr17:55194237 nonsynonymous SNV 0.997 4 5 hm5C_associated_SNPs_36540 0 0 1 0 2 AKAP1 chr17:55194288 5'GT 55194288 Upstream 52bp
chr11 117280347 117280347 1 + G T SKCM 117280351 + 117280331 117280371 41 CAGTCGACTCAACCCCGAGTCTCACCTCCCGCAAGATCCAC CAGTCGACTCAACCCCTAGTCTCACCTCCCGCAAGATCCAC < 41bp 1 0.191364688620508 1 0.0474931299686432 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP164 ENSG00000110274 CDS Human protein_coding chr11:117280351 chr11:117280347 synonymous SNV . 0 17 hm5C_associated_SNPs_36541 0 0 1 0 1 CEP164 chr11:117280334 3'AG 117280334 Downstream 14bp
chr15 91492571 91492571 1 + G A SKCM 91492589 + 91492569 91492609 41 TCGGGTGAAGAAGCTGCTGGCAGCGGGTGTGGTGTCGGCCA TCAGGTGAAGAAGCTGCTGGCAGCGGGTGTGGTGTCGGCCA < 41bp 1 0.774214043417505 1 0.818335890769958 experiment 0.451571913164991 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UNC45A ENSG00000140553 CDS Human protein_coding chr15:91492589 chr15:91492571 nonsynonymous SNV 0.999 4 3 hm5C_associated_SNPs_36543 0 0 1 0 1 UNC45A chr15:91492546 3'AG 91492546 Downstream 26bp
chr8 100519370 100519370 1 + G C SKCM 100519390 + 100519370 100519410 41 GGGAAGGTTGGCAGTCAGGACATTTTGAAGGAGTATTTCTA CGGAAGGTTGGCAGTCAGGACATTTTGAAGGAGTATTTCTA < 41bp 1 0.0091512374746645 1 0.0653398334980011 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100519390 chr8:100519370 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_36544 0 0 0 0 2 VPS13B chr8:100519365 3'AG 100519365 Downstream 6bp
chr8 100519370 100519370 1 + G C SKCM 100519390 + 100519370 100519410 41 GGGAAGGTTGGCAGTCAGGACATTTTGAAGGAGTATTTCTA CGGAAGGTTGGCAGTCAGGACATTTTGAAGGAGTATTTCTA < 41bp 1 0.0091512374746645 1 0.0653398334980011 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100519390 chr8:100519370 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_36544 0 0 0 0 2 VPS13B chr8:100519431 5'GT 100519431 Upstream 62bp
chr12 2906442 2906442 1 + G C SKCM 2906431 + 2906411 2906451 41 GGATCGCAAGGACAAATTCTCCTTTGACCTGGGAAAAGGTA GGATCGCAAGGACAAATTCTCCTTTGACCTGCGAAAAGGTA < 41bp 1 0.0404446416153519 1 0.0297217667102814 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP4 ENSG00000004478 CDS Human protein_coding chr12:2906431 chr12:2906442 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_36545 0 0 1 0 1 FKBP4 chr12:2906448 5'GT 2906448 Upstream 7bp
chr7 134215404 134215404 1 + G T SKCM 134215396 + 134215376 134215416 41 CTTTTCTTTTGCCTTTCAGTCTCCTCTTGGCAAAGTGAAAG CTTTTCTTTTGCCTTTCAGTCTCCTCTTTGCAAAGTGAAAG < 41bp 1 0.232933679188929 1 0.272315561771393 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134215396 chr7:134215404 nonsynonymous SNV 0.023 3 29 hm5C_associated_SNPs_36546 0 0 1 0 1 AKR1B10 chr7:134215395 3'AG 134215395 Downstream 10bp
chr20 37154673 37154673 1 + C A SKCM 37154672 + 37154652 37154692 41 GAAACGGACCCCAACAACACCCAAATGATATTAGGTTTGTA GAAACGGACCCCAACAACACCAAAATGATATTAGGTTTGTA < 41bp 1 0.207900311673923 1 0.443513035774231 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37154672 chr20:37154673 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_36547 0 0 1 0 1 RALGAPB chr20:37154685 5'GT 37154685 Upstream 13bp
chr21 34635141 34635141 1 + C G SKCM 34635140 + 34635120 34635160 41 GGCCATTTCCTAACCTGCCACCGTTGGAAGCCATGGATATG GGCCATTTCCTAACCTGCCACGGTTGGAAGCCATGGATATG < 41bp 1 0.107896090190869 1 0.060190349817276 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IFNAR2 ENSG00000159110 CDS Human protein_coding chr21:34635140 chr21:34635141 nonsynonymous SNV 0.001 3 22 hm5C_associated_SNPs_36549 0 0 1 0 1 IFNAR2 chr21:34635098 3'AG 34635098 Downstream 44bp
chr20 37159863 37159863 1 + C G SKCM 37159852 + 37159832 37159872 41 AGATTCAGCACTTTTGGAAGCCATTGGTTGCCAGATGGAGA AGATTCAGCACTTTTGGAAGCCATTGGTTGCGAGATGGAGA < 41bp 1 0.0203154217039444 1 0.102235436439514 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37159852 chr20:37159863 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_36550 0 0 1 0 2 RALGAPB chr20:37159810 3'AG 37159810 Downstream 54bp
chr20 37159863 37159863 1 + C G SKCM 37159852 + 37159832 37159872 41 AGATTCAGCACTTTTGGAAGCCATTGGTTGCCAGATGGAGA AGATTCAGCACTTTTGGAAGCCATTGGTTGCGAGATGGAGA < 41bp 1 0.0203154217039444 1 0.102235436439514 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37159852 chr20:37159863 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_36550 0 0 1 0 2 RALGAPB chr20:37159874 5'GT 37159874 Upstream 12bp
chr10 51863866 51863866 1 + C G SKCM 51863880 + 51863860 51863900 41 AGCTCCCCACGTTGGTTTCCCTGTTTGATGATGAAGATGAA AGCTCCGCACGTTGGTTTCCCTGTTTGATGATGAAGATGAA < 41bp 1 0.141366576963284 1 0.106025338172913 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WASHC2A ENSG00000099290 CDS Human protein_coding chr10:51863880 chr10:51863866 nonsynonymous SNV 0.008 0 7 hm5C_associated_SNPs_36551 0 0 1 0 2 WASHC2A chr10:51863802 3'AG 51863802 Downstream 65bp
chr10 51863866 51863866 1 + C G SKCM 51863880 + 51863860 51863900 41 AGCTCCCCACGTTGGTTTCCCTGTTTGATGATGAAGATGAA AGCTCCGCACGTTGGTTTCCCTGTTTGATGATGAAGATGAA < 41bp 1 0.141366576963284 1 0.106025338172913 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WASHC2A ENSG00000099290 CDS Human protein_coding chr10:51863880 chr10:51863866 nonsynonymous SNV 0.008 0 7 hm5C_associated_SNPs_36551 0 0 1 0 2 WASHC2A chr10:51863903 5'GT 51863903 Upstream 38bp
chr8 42220189 42220189 1 + C G SKCM 42220194 + 42220174 42220214 41 TTTTATCACAGATACCCTGTCAAAGGGTGAGACAAAGTTCA TTTTATCACAGATACGCTGTCAAAGGGTGAGACAAAGTTCA < 41bp 1 0.495061313630176 1 0.701883614063263 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLB ENSG00000070501 CDS Human protein_coding chr8:42220194 chr8:42220189 synonymous SNV . 0 16 hm5C_associated_SNPs_36556 0 0 1 0 2 POLB chr8:42220130 3'AG 42220130 Downstream 60bp
chr8 42220189 42220189 1 + C G SKCM 42220194 + 42220174 42220214 41 TTTTATCACAGATACCCTGTCAAAGGGTGAGACAAAGTTCA TTTTATCACAGATACGCTGTCAAAGGGTGAGACAAAGTTCA < 41bp 1 0.495061313630176 1 0.701883614063263 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLB ENSG00000070501 CDS Human protein_coding chr8:42220194 chr8:42220189 synonymous SNV . 0 16 hm5C_associated_SNPs_36556 0 0 1 0 2 POLB chr8:42220216 5'GT 42220216 Upstream 28bp
chrX 21995222 21995222 1 + C T SKCM 21995205 + 21995185 21995225 41 ACCCATAGTGCGAGGAGGAGCCATCGACAGATACTGGCCCA ACCCATAGTGCGAGGAGGAGCCATCGACAGATACTGGTCCA < 41bp 1 0.141518856760779 1 0.250954389572144 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMS ENSG00000102172 CDS Human protein_coding chrX:21995205 chrX:21995222 nonsynonymous SNV 0.941 4 38 hm5C_associated_SNPs_36557 0 0 1 0 1 SMS chrX:21995179 3'AG 21995179 Downstream 44bp
chr19 41758839 41758839 1 + C T SKCM 41758850 + 41758830 41758870 41 ACACAGCTTCCTCCTCTATTCCCGGCTCGGGGACCAGCCAG ACACAGCTTTCTCCTCTATTCCCGGCTCGGGGACCAGCCAG < 41bp 1 0.611617025282362 1 0.301195681095123 experiment 0.776765949435275 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AXL ENSG00000167601 CDS Human protein_coding chr19:41758850 chr19:41758839 synonymous SNV . 0 10 hm5C_associated_SNPs_36558 0 0 1 0 2 AXL chr19:41758751 3'AG 41758751 Downstream 89bp
chr19 41758839 41758839 1 + C T SKCM 41758850 + 41758830 41758870 41 ACACAGCTTCCTCCTCTATTCCCGGCTCGGGGACCAGCCAG ACACAGCTTTCTCCTCTATTCCCGGCTCGGGGACCAGCCAG < 41bp 1 0.611617025282362 1 0.301195681095123 experiment 0.776765949435275 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AXL ENSG00000167601 CDS Human protein_coding chr19:41758850 chr19:41758839 synonymous SNV . 0 10 hm5C_associated_SNPs_36558 0 0 1 0 2 AXL chr19:41758872 5'GT 41758872 Upstream 34bp
chr19 41758839 41758839 1 + C T SKCM 41758851 + 41758831 41758871 41 CACAGCTTCCTCCTCTATTCCCGGCTCGGGGACCAGCCAGT CACAGCTTTCTCCTCTATTCCCGGCTCGGGGACCAGCCAGT < 41bp 1 0.195068261021293 1 0.239990919828415 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 CDS Human protein_coding chr19:41758851 chr19:41758839 synonymous SNV . 0 9 hm5C_associated_SNPs_36559 0 0 1 0 2 AXL chr19:41758751 3'AG 41758751 Downstream 89bp
chr19 41758839 41758839 1 + C T SKCM 41758851 + 41758831 41758871 41 CACAGCTTCCTCCTCTATTCCCGGCTCGGGGACCAGCCAGT CACAGCTTTCTCCTCTATTCCCGGCTCGGGGACCAGCCAGT < 41bp 1 0.195068261021293 1 0.239990919828415 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 CDS Human protein_coding chr19:41758851 chr19:41758839 synonymous SNV . 0 9 hm5C_associated_SNPs_36559 0 0 1 0 2 AXL chr19:41758872 5'GT 41758872 Upstream 34bp
chr19 10794134 10794134 1 + C T SKCM 10794136 + 10794116 10794156 41 TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG TGCCCTAGAAAAGCTTTTTCCTGACACCCCTCTCGCCCTTG < 41bp 1 0.406524107415439 1 0.178416550159454 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794136 chr19:10794134 synonymous SNV . 0 19 hm5C_associated_SNPs_36560 0 0 1 0 2 ILF3 chr19:10794042 3'AG 10794042 Downstream 93bp
chr19 10794134 10794134 1 + C T SKCM 10794136 + 10794116 10794156 41 TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG TGCCCTAGAAAAGCTTTTTCCTGACACCCCTCTCGCCCTTG < 41bp 1 0.406524107415439 1 0.178416550159454 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794136 chr19:10794134 synonymous SNV . 0 19 hm5C_associated_SNPs_36560 0 0 1 0 2 ILF3 chr19:10794218 5'GT 10794218 Upstream 85bp
chr19 10794134 10794134 1 + C T SKCM 10794142 + 10794122 10794162 41 AGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTGATGCCA AGAAAAGCTTTTTCCTGACACCCCTCTCGCCCTTGATGCCA < 41bp 1 0.189132670153017 1 0.0315176248550415 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794142 chr19:10794134 synonymous SNV . 0 13 hm5C_associated_SNPs_36561 0 0 1 0 2 ILF3 chr19:10794042 3'AG 10794042 Downstream 93bp
chr19 10794134 10794134 1 + C T SKCM 10794142 + 10794122 10794162 41 AGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTGATGCCA AGAAAAGCTTTTTCCTGACACCCCTCTCGCCCTTGATGCCA < 41bp 1 0.189132670153017 1 0.0315176248550415 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794142 chr19:10794134 synonymous SNV . 0 13 hm5C_associated_SNPs_36561 0 0 1 0 2 ILF3 chr19:10794218 5'GT 10794218 Upstream 85bp
chr19 11660378 11660378 1 + C T STAD 11660370 + 11660350 11660390 41 CACCACCCTTCGCAGGCTGGCATGACTGCGCCAGGGACCAA CACCACCCTTCGCAGGCTGGCATGACTGTGCCAGGGACCAA < 41bp 1 0.689737700805291 1 0.0487708747386932 experiment 0.620524598389418 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CNN1 ENSG00000130176 CDS Human protein_coding chr19:11660370 chr19:11660378 nonsynonymous SNV 0.909 4 29 hm5C_associated_SNPs_36563 0 0 0 0 1 CNN1 chr19:11660365 3'AG 11660365 Downstream 14bp
chr15 76630254 76630254 1 + C T STAD 76630260 + 76630240 76630280 41 GTACCTGGACGAGACGTGCACGTGCTTCGTGAGAGACGGGA GTACCTGGACGAGATGTGCACGTGCTTCGTGAGAGACGGGA < 41bp 1 0.30850342408602 1 0.393552213907242 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ISL2 ENSG00000159556 CDS Human protein_coding chr15:76630260 chr15:76630254 nonsynonymous SNV 0.999 5 15 hm5C_associated_SNPs_36565 0 0 1 0 1 ISL2 chr15:76630308 5'GT 76630308 Upstream 55bp
chr9 133355792 133355792 1 + G A STAD 133355811 + 133355791 133355831 41 CGTATTGACATCGTGGAGAACCGCTTCATTGGAATGAAGTC CATATTGACATCGTGGAGAACCGCTTCATTGGAATGAAGTC < 41bp 1 0.111804999385471 1 0.0943539440631866 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ASS1 ENSG00000130707 CDS Human protein_coding chr9:133355811 chr9:133355792 nonsynonymous SNV 0.962 3 2 hm5C_associated_SNPs_36566 1 0 1 0 2 ASS1 chr9:133355772 3'AG 133355772 Downstream 21bp
chr9 133355792 133355792 1 + G A STAD 133355811 + 133355791 133355831 41 CGTATTGACATCGTGGAGAACCGCTTCATTGGAATGAAGTC CATATTGACATCGTGGAGAACCGCTTCATTGGAATGAAGTC < 41bp 1 0.111804999385471 1 0.0943539440631866 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ASS1 ENSG00000130707 CDS Human protein_coding chr9:133355811 chr9:133355792 nonsynonymous SNV 0.962 3 2 hm5C_associated_SNPs_36566 1 0 1 0 2 ASS1 chr9:133355836 5'GT 133355836 Upstream 45bp
chr14 20822321 20822321 1 + G T STAD 20822301 + 20822281 20822321 41 CTCCCTTGAAGCCAGAGTCACAGCTAGATCTTCGGGTACAG CTCCCTTGAAGCCAGAGTCACAGCTAGATCTTCGGGTACAT < 41bp 1 0.406760768269984 1 0.231780916452408 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARP2 ENSG00000129484 CDS Human protein_coding chr14:20822301 chr14:20822321 nonsynonymous SNV 0.839 3 41 hm5C_associated_SNPs_36567 0 0 1 0 1 PARP2 chr14:20822406 5'GT 20822406 Upstream 86bp
chr12 56536156 56536156 1 + T C STAD 56536138 + 56536118 56536158 41 CAGAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACCGCTGG CAGAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACCGCCGG < 41bp 1 0.448552551713576 1 0.315354406833649 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56536138 chr12:56536156 nonsynonymous SNV 0.108 2 39 hm5C_associated_SNPs_36568 0 0 0 0 2 ESYT1 chr12:56536069 3'AG 56536069 Downstream 88bp
chr12 56536156 56536156 1 + T C STAD 56536138 + 56536118 56536158 41 CAGAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACCGCTGG CAGAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACCGCCGG < 41bp 1 0.448552551713576 1 0.315354406833649 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56536138 chr12:56536156 nonsynonymous SNV 0.108 2 39 hm5C_associated_SNPs_36568 0 0 0 0 2 ESYT1 chr12:56536209 5'GT 56536209 Upstream 54bp
chr17 80012606 80012606 1 + G A STAD 80012597 + 80012577 80012617 41 ACTACCTGGACTGTGGGGACCTCAGCAACGCCCTCAAGTGC ACTACCTGGACTGTGGGGACCTCAGCAACACCCTCAAGTGC < 41bp 1 0.591446759034854 1 0.245601236820221 experiment 0.817106481930291 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GPS1 ENSG00000169727 CDS Human protein_coding chr17:80012597 chr17:80012606 nonsynonymous SNV 0.998 5 30 hm5C_associated_SNPs_36569 0 0 1 0 1 GPS1 chr17:80012686 5'GT 80012686 Upstream 81bp
chr17 61907726 61907726 1 + G A STAD 61907746 + 61907726 61907766 41 GGTGGAGAAAGTACCAGATTCAACTTATGAGATGATTGGTG AGTGGAGAAAGTACCAGATTCAACTTATGAGATGATTGGTG < 41bp 1 0.417165571098142 1 0.375491410493851 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61907746 chr17:61907726 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_36570 0 0 1 0 1 PSMC5 chr17:61907631 3'AG 61907631 Downstream 96bp
chr4 20568977 20568977 1 + T G STAD 20568982 + 20568962 20569002 41 AGTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGG AGTGATCCAGTTGACGTTTACCGATGCACCTGTCCATATGG < 41bp 1 0.121157058187359 1 0.559580445289612 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568982 chr4:20568977 nonsynonymous SNV 0.997 2 16 hm5C_associated_SNPs_36571 0 0 1 0 2 SLIT2 chr4:20568885 3'AG 20568885 Downstream 93bp
chr4 20568977 20568977 1 + T G STAD 20568982 + 20568962 20569002 41 AGTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGG AGTGATCCAGTTGACGTTTACCGATGCACCTGTCCATATGG < 41bp 1 0.121157058187359 1 0.559580445289612 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568982 chr4:20568977 nonsynonymous SNV 0.997 2 16 hm5C_associated_SNPs_36571 0 0 1 0 2 SLIT2 chr4:20569009 5'GT 20569009 Upstream 33bp
chr4 20568977 20568977 1 + T G STAD 20568983 + 20568963 20569003 41 GTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGGT GTGATCCAGTTGACGTTTACCGATGCACCTGTCCATATGGT < 41bp 1 0.14809053373071 1 0.560909390449524 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568983 chr4:20568977 nonsynonymous SNV 0.997 2 15 hm5C_associated_SNPs_36572 0 0 1 0 2 SLIT2 chr4:20568885 3'AG 20568885 Downstream 93bp
chr4 20568977 20568977 1 + T G STAD 20568983 + 20568963 20569003 41 GTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGGT GTGATCCAGTTGACGTTTACCGATGCACCTGTCCATATGGT < 41bp 1 0.14809053373071 1 0.560909390449524 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568983 chr4:20568977 nonsynonymous SNV 0.997 2 15 hm5C_associated_SNPs_36572 0 0 1 0 2 SLIT2 chr4:20569009 5'GT 20569009 Upstream 33bp
chr2 32668623 32668623 1 + A G STAD 32668612 + 32668592 32668632 41 TGGACCTGTTCTGTTGAAGGCTTTACTTGATAATATGTCAT TGGACCTGTTCTGTTGAAGGCTTTACTTGATGATATGTCAT < 41bp 1 0.0433821810209544 1 0.107101768255234 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32668612 chr2:32668623 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_36573 0 0 1 0 2 BIRC6 chr2:32668559 3'AG 32668559 Downstream 65bp
chr2 32668623 32668623 1 + A G STAD 32668612 + 32668592 32668632 41 TGGACCTGTTCTGTTGAAGGCTTTACTTGATAATATGTCAT TGGACCTGTTCTGTTGAAGGCTTTACTTGATGATATGTCAT < 41bp 1 0.0433821810209544 1 0.107101768255234 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32668612 chr2:32668623 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_36573 0 0 1 0 2 BIRC6 chr2:32668656 5'GT 32668656 Upstream 34bp
chr7 39991418 39991418 1 + G A STAD 39991410 + 39991390 39991430 41 CCTAGTCCCTACAGCAGCAGCAGCTGGCGCCGCTCTCGCAG CCTAGTCCCTACAGCAGCAGCAGCTGGCACCGCTCTCGCAG < 41bp 1 0.541407111205082 1 0.412324011325836 experiment 0.917185777589837 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:39991410 chr7:39991418 nonsynonymous SNV 0.938 3 29 hm5C_associated_SNPs_36574 0 0 1 0 1 CDK13 chr7:39991451 5'GT 39991451 Upstream 34bp
chr7 39991418 39991418 1 + G A STAD 39991428 + 39991408 39991448 41 AGCAGCTGGCGCCGCTCTCGCAGTCCCTACAGCCCTGTGCT AGCAGCTGGCACCGCTCTCGCAGTCCCTACAGCCCTGTGCT < 41bp 1 0.20977966047927 1 0.745945274829865 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:39991428 chr7:39991418 nonsynonymous SNV 0.938 3 11 hm5C_associated_SNPs_36575 0 0 1 0 1 CDK13 chr7:39991451 5'GT 39991451 Upstream 34bp
chr10 35495831 35495831 1 + G A STAD 35495841 + 35495821 35495861 41 AGCTGCCACTGGTGACATGCCAACTTACCAGATCCGAGCTC AGCTGCCACTAGTGACATGCCAACTTACCAGATCCGAGCTC < 41bp 1 0.734559078584371 1 0.44742876291275 experiment 0.530881842831259 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CREM ENSG00000095794 CDS Human protein_coding chr10:35495841 chr10:35495831 nonsynonymous SNV 0.998 3 11 hm5C_associated_SNPs_36576 0 0 0 0 1 CREM chr10:35495823 3'AG 35495823 Downstream 9bp
chr3 157841666 157841666 1 + G C STAD 157841658 + 157841638 157841678 41 ATTATATTTTATTTCAGACGCAGGCATCGATCAAGCAGTAG ATTATATTTTATTTCAGACGCAGGCATCCATCAAGCAGTAG < 41bp 1 0.337263201986059 1 0.212467461824417 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157841658 chr3:157841666 nonsynonymous SNV 0.999 4 29 hm5C_associated_SNPs_36579 0 0 1 0 1 RSRC1 chr3:157841655 3'AG 157841655 Downstream 12bp
chr3 157841666 157841666 1 + G C STAD 157841665 + 157841645 157841685 41 TTTATTTCAGACGCAGGCATCGATCAAGCAGTAGCTCTTCT TTTATTTCAGACGCAGGCATCCATCAAGCAGTAGCTCTTCT < 41bp 1 0.0337983934261383 1 0.0768753886222839 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157841665 chr3:157841666 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_36580 0 0 1 0 1 RSRC1 chr3:157841655 3'AG 157841655 Downstream 12bp
chr19 18729278 18729278 1 + G A STAD 18729284 + 18729264 18729304 41 ACCCTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCCAGGT ACCCTGGTGACCGCACCTGGCCAGCACCTCAAGTTCCAGGT < 41bp 1 0.222687025657753 1 0.177186816930771 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM59L ENSG00000105696 CDS Human protein_coding chr19:18729284 chr19:18729278 synonymous SNV . 0 15 hm5C_associated_SNPs_36582 0 0 1 0 2 TMEM59L chr19:18729185 3'AG 18729185 Downstream 94bp
chr19 18729278 18729278 1 + G A STAD 18729284 + 18729264 18729304 41 ACCCTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCCAGGT ACCCTGGTGACCGCACCTGGCCAGCACCTCAAGTTCCAGGT < 41bp 1 0.222687025657753 1 0.177186816930771 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM59L ENSG00000105696 CDS Human protein_coding chr19:18729284 chr19:18729278 synonymous SNV . 0 15 hm5C_associated_SNPs_36582 0 0 1 0 2 TMEM59L chr19:18729302 5'GT 18729302 Upstream 25bp
chr4 183601724 183601724 1 + C T STAD 183601733 + 183601713 183601753 41 TGTAGTGGCAACGGGCAGTACTCCAAGGGCCGCTGCCTGTG TGTAGTGGCAATGGGCAGTACTCCAAGGGCCGCTGCCTGTG < 41bp 1 0.761425496214708 1 0.980068147182465 experiment 0.477149007570583 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|28418038;GSE74771;RNA-BisSeq;293T;Control TENM3 ENSG00000218336 CDS Human protein_coding chr4:183601733 chr4:183601724 synonymous SNV . 0 12 hm5C_associated_SNPs_36583 0 0 1 0 1 TENM3 chr4:183601696 3'AG 183601696 Downstream 29bp
chr8 145065717 145065717 1 + T C STAD 145065698 + 145065678 145065718 41 AAGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTTC AAGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTCC < 41bp 1 0.183378354931208 1 0.076710432767868 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065698 chr8:145065717 nonsynonymous SNV 0.986 1 40 hm5C_associated_SNPs_36584 0 0 1 0 1 GRINA chr8:145065770 5'GT 145065770 Upstream 54bp
chr8 145065717 145065717 1 + T C STAD 145065699 + 145065679 145065719 41 AGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTTCC AGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTCCC < 41bp 1 0.186655864532448 1 0.11325865983963 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065699 chr8:145065717 nonsynonymous SNV 0.986 1 39 hm5C_associated_SNPs_36585 0 0 1 0 1 GRINA chr8:145065770 5'GT 145065770 Upstream 54bp
chr11 61491019 61491019 1 + C T STAD 61491024 + 61491004 61491044 41 ACCAAGAGGAGGCAGCGTAACCTGCGGACCTACAACCTGCG ACCAAGAGGAGGCAGTGTAACCTGCGGACCTACAACCTGCG < 41bp 1 0.107408033710381 1 0.16295063495636 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61491024 chr11:61491019 nonsynonymous SNV 0.995 4 16 hm5C_associated_SNPs_36586 0 0 0 0 1 DAGLA chr11:61491044 5'GT 61491044 Upstream 26bp
chr17 59482051 59482051 1 + G A STAD 59482065 + 59482045 59482085 41 CTCGTCGTGCGACCCTCCCCCCGCGCGGGAACCACCCACCT CTCGTCATGCGACCCTCCCCCCGCGCGGGAACCACCCACCT < 41bp 1 0.435488728673533 1 0.583490490913391 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBX2 ENSG00000121068 CDS Human protein_coding chr17:59482065 chr17:59482051 synonymous SNV . 0 7 hm5C_associated_SNPs_36587 0 0 0 0 2 TBX2 chr17:59481967 3'AG 59481967 Downstream 85bp
chr17 59482051 59482051 1 + G A STAD 59482065 + 59482045 59482085 41 CTCGTCGTGCGACCCTCCCCCCGCGCGGGAACCACCCACCT CTCGTCATGCGACCCTCCCCCCGCGCGGGAACCACCCACCT < 41bp 1 0.435488728673533 1 0.583490490913391 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBX2 ENSG00000121068 CDS Human protein_coding chr17:59482065 chr17:59482051 synonymous SNV . 0 7 hm5C_associated_SNPs_36587 0 0 0 0 2 TBX2 chr17:59482130 5'GT 59482130 Upstream 80bp
chr17 59482051 59482051 1 + G A STAD 59482066 + 59482046 59482086 41 TCGTCGTGCGACCCTCCCCCCGCGCGGGAACCACCCACCTC TCGTCATGCGACCCTCCCCCCGCGCGGGAACCACCCACCTC < 41bp 1 0.703877957688248 1 0.281840682029724 experiment 0.592244084623504 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBX2 ENSG00000121068 CDS Human protein_coding chr17:59482066 chr17:59482051 synonymous SNV . 0 6 hm5C_associated_SNPs_36588 0 0 0 0 2 TBX2 chr17:59481967 3'AG 59481967 Downstream 85bp
chr17 59482051 59482051 1 + G A STAD 59482066 + 59482046 59482086 41 TCGTCGTGCGACCCTCCCCCCGCGCGGGAACCACCCACCTC TCGTCATGCGACCCTCCCCCCGCGCGGGAACCACCCACCTC < 41bp 1 0.703877957688248 1 0.281840682029724 experiment 0.592244084623504 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBX2 ENSG00000121068 CDS Human protein_coding chr17:59482066 chr17:59482051 synonymous SNV . 0 6 hm5C_associated_SNPs_36588 0 0 0 0 2 TBX2 chr17:59482130 5'GT 59482130 Upstream 80bp
chr9 127561679 127561679 1 + A G STAD 127561684 + 127561664 127561704 41 TGCTGGGCATCAAGAAGGAGCTGTCCCGCCTGGGCCTCCAG TGCTGGGCATCAAGAGGGAGCTGTCCCGCCTGGGCCTCCAG < 41bp 1 0.0894582822912715 1 0.17450624704361 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OLFML2A ENSG00000185585 CDS Human protein_coding chr9:127561684 chr9:127561679 nonsynonymous SNV 0.999 3 16 hm5C_associated_SNPs_36589 0 0 0 0 1 OLFML2A chr9:127561770 5'GT 127561770 Upstream 92bp
chr20 47582545 47582545 1 + G A STAD 47582558 + 47582538 47582578 41 CCTTGTCGTCAGCAGATAATCTGGTATGTTGGTGATCATCC CCTTGTCATCAGCAGATAATCTGGTATGTTGGTGATCATCC < 41bp 1 0.653798470134631 1 0.0766105353832245 experiment 0.692403059730737 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47582558 chr20:47582545 synonymous SNV . 0 8 hm5C_associated_SNPs_36590 0 0 1 0 1 ARFGEF2 chr20:47582560 5'GT 47582560 Upstream 16bp
chrX 107834414 107834414 1 + C T STAD 107834422 + 107834402 107834442 41 AGCCTGGGGCTCCTGGGCTTCCAGGGCCTCCTGGCCCTGCT AGCCTGGGGCTCTTGGGCTTCCAGGGCCTCCTGGCCCTGCT < 41bp 1 0.624271626235516 1 0.932164907455444 experiment 0.751456747528968 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107834422 chrX:107834414 nonsynonymous SNV 0.999 5 13 hm5C_associated_SNPs_36594 0 0 1 0 1 COL4A5 chrX:107834461 5'GT 107834461 Upstream 48bp
chr17 18832189 18832189 1 + A G STAD 18832171 + 18832151 18832191 41 TTTCTTGCTGCAGCAGAGACCCTGAAGGAAAGAGGTGCATA TTTCTTGCTGCAGCAGAGACCCTGAAGGAAAGAGGTGCGTA < 41bp 1 0.36771001986785 1 0.159948170185089 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPSAP2 ENSG00000141127 CDS Human protein_coding chr17:18832171 chr17:18832189 synonymous SNV . 0 39 hm5C_associated_SNPs_36595 0 0 1 0 2 PRPSAP2 chr17:18832124 3'AG 18832124 Downstream 66bp
chr17 18832189 18832189 1 + A G STAD 18832171 + 18832151 18832191 41 TTTCTTGCTGCAGCAGAGACCCTGAAGGAAAGAGGTGCATA TTTCTTGCTGCAGCAGAGACCCTGAAGGAAAGAGGTGCGTA < 41bp 1 0.36771001986785 1 0.159948170185089 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPSAP2 ENSG00000141127 CDS Human protein_coding chr17:18832171 chr17:18832189 synonymous SNV . 0 39 hm5C_associated_SNPs_36595 0 0 1 0 2 PRPSAP2 chr17:18832270 5'GT 18832270 Upstream 82bp
chr2 231327216 231327216 1 + C T STAD 231327230 + 231327210 231327250 41 TCTCAGCACCGAGAAGTGAGCCTGGTAAGGAAGTTTGGGAG TCTCAGTACCGAGAAGTGAGCCTGGTAAGGAAGTTTGGGAG < 41bp 1 0.425095986104199 1 0.320703268051147 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SP100 ENSG00000067066 CDS Human protein_coding chr2:231327230 chr2:231327216 nonsynonymous SNV 0.001 0 7 hm5C_associated_SNPs_36598 0 0 1 0 2 SP100 chr2:231327150 3'AG 231327150 Downstream 67bp
chr2 231327216 231327216 1 + C T STAD 231327230 + 231327210 231327250 41 TCTCAGCACCGAGAAGTGAGCCTGGTAAGGAAGTTTGGGAG TCTCAGTACCGAGAAGTGAGCCTGGTAAGGAAGTTTGGGAG < 41bp 1 0.425095986104199 1 0.320703268051147 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SP100 ENSG00000067066 CDS Human protein_coding chr2:231327230 chr2:231327216 nonsynonymous SNV 0.001 0 7 hm5C_associated_SNPs_36598 0 0 1 0 2 SP100 chr2:231327233 5'GT 231327233 Upstream 18bp
chr17 28772965 28772965 1 + C A STAD 28772959 + 28772939 28772979 41 ATCTGGCTCTGGCTCTTTATCGATACCATTCCTACAAAGAC ATCTGGCTCTGGCTCTTTATCGATACAATTCCTACAAAGAC < 41bp 1 0.592093950520666 1 0.841158986091614 experiment 0.815812098958668 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPD ENSG00000108582 CDS Human protein_coding chr17:28772959 chr17:28772965 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_36599 0 0 1 0 1 CPD chr17:28773038 5'GT 28773038 Upstream 74bp
chr19 42855624 42855624 1 + G A STAD 42855632 + 42855612 42855652 41 TCTAGCCAGTGCGCCTGGTGCCAGTCCACCCACACCTGCTT TCTAGCCAGTGCACCTGGTGCCAGTCCACCCACACCTGCTT < 41bp 1 0.0752643813059662 1 0.180868595838547 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42855632 chr19:42855624 nonsynonymous SNV 0.994 3 13 hm5C_associated_SNPs_36600 0 0 1 0 2 MEGF8 chr19:42855581 3'AG 42855581 Downstream 44bp
chr19 42855624 42855624 1 + G A STAD 42855632 + 42855612 42855652 41 TCTAGCCAGTGCGCCTGGTGCCAGTCCACCCACACCTGCTT TCTAGCCAGTGCACCTGGTGCCAGTCCACCCACACCTGCTT < 41bp 1 0.0752643813059662 1 0.180868595838547 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42855632 chr19:42855624 nonsynonymous SNV 0.994 3 13 hm5C_associated_SNPs_36600 0 0 1 0 2 MEGF8 chr19:42855712 5'GT 42855712 Upstream 89bp
chr8 145735838 145735838 1 + G A STAD 145735855 + 145735835 145735875 41 GTGGTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTT GTGATCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTT < 41bp 1 0.233141495493219 1 0.0862568318843842 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735855 chr8:145735838 nonsynonymous SNV 0.133 0 4 hm5C_associated_SNPs_36601 0 0 1 0 2 MFSD3 chr8:145735743 3'AG 145735743 Downstream 96bp
chr8 145735838 145735838 1 + G A STAD 145735855 + 145735835 145735875 41 GTGGTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTT GTGATCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTT < 41bp 1 0.233141495493219 1 0.0862568318843842 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735855 chr8:145735838 nonsynonymous SNV 0.133 0 4 hm5C_associated_SNPs_36601 0 0 1 0 2 MFSD3 chr8:145735890 5'GT 145735890 Upstream 53bp
chr8 145735838 145735838 1 + G A STAD 145735858 + 145735838 145735878 41 GTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTTGCT ATCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTTGCT < 41bp 1 0.183313117065154 1 0.190681576728821 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735858 chr8:145735838 nonsynonymous SNV 0.133 0 1 hm5C_associated_SNPs_36602 0 0 1 0 2 MFSD3 chr8:145735743 3'AG 145735743 Downstream 96bp
chr8 145735838 145735838 1 + G A STAD 145735858 + 145735838 145735878 41 GTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTTGCT ATCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTTGCT < 41bp 1 0.183313117065154 1 0.190681576728821 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735858 chr8:145735838 nonsynonymous SNV 0.133 0 1 hm5C_associated_SNPs_36602 0 0 1 0 2 MFSD3 chr8:145735890 5'GT 145735890 Upstream 53bp
chr20 62631096 62631096 1 + C T STAD 62631080 + 62631060 62631100 41 AGCTACAAGTAGCTCGGAACCTTATCATGAAGGGGACGGAG AGCTACAAGTAGCTCGGAACCTTATCATGAAGGGGATGGAG < 41bp 1 0.138715517841435 1 0.0804316401481628 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62631080 chr20:62631096 nonsynonymous SNV 0.995 2 37 hm5C_associated_SNPs_36603 0 0 1 0 1 PRPF6 chr20:62631112 5'GT 62631112 Upstream 17bp
chr16 56660799 56660799 1 + T C STAD 56660787 + 56660767 56660807 41 CTCTCACTCTCCCCTTCTTCCCCAGGCTGCTGTTCCTGCTG CTCTCACTCTCCCCTTCTTCCCCAGGCTGCTGCTCCTGCTG < 41bp 1 0.440432971162156 1 0.14299863576889 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MT1E ENSG00000169715 CDS Human protein_coding chr16:56660787 chr16:56660799 synonymous SNV . 0 33 hm5C_associated_SNPs_36604 0 0 1 2 1 MT1E chr16:56660792 3'AG 56660792 Downstream 8bp
chr16 56660799 56660799 1 + T C STAD 56660788 + 56660768 56660808 41 TCTCACTCTCCCCTTCTTCCCCAGGCTGCTGTTCCTGCTGC TCTCACTCTCCCCTTCTTCCCCAGGCTGCTGCTCCTGCTGC < 41bp 1 0.661104860714006 1 0.342791974544525 experiment 0.677790278571988 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MT1E ENSG00000169715 CDS Human protein_coding chr16:56660788 chr16:56660799 synonymous SNV . 0 32 hm5C_associated_SNPs_36605 0 0 1 2 1 MT1E chr16:56660792 3'AG 56660792 Downstream 8bp
chr16 56660799 56660799 1 + T C STAD 56660789 + 56660769 56660809 41 CTCACTCTCCCCTTCTTCCCCAGGCTGCTGTTCCTGCTGCC CTCACTCTCCCCTTCTTCCCCAGGCTGCTGCTCCTGCTGCC < 41bp 1 0.71999130251666 1 0.776679158210754 experiment 0.560017394966679 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MT1E ENSG00000169715 CDS Human protein_coding chr16:56660789 chr16:56660799 synonymous SNV . 0 31 hm5C_associated_SNPs_36606 0 0 1 2 1 MT1E chr16:56660792 3'AG 56660792 Downstream 8bp
chr7 6631411 6631411 1 + C T STAD 6631401 + 6631381 6631421 41 CAGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCT CAGCCCTCAAGGGAACAAAGCCGATGACAGTCGGATGAGCT < 41bp 1 0.125456383969473 1 0.108920186758041 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631401 chr7:6631411 synonymous SNV . 0 31 hm5C_associated_SNPs_36609 0 0 1 0 2 C7orf26 chr7:6631334 3'AG 6631334 Downstream 78bp
chr7 6631411 6631411 1 + C T STAD 6631401 + 6631381 6631421 41 CAGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCT CAGCCCTCAAGGGAACAAAGCCGATGACAGTCGGATGAGCT < 41bp 1 0.125456383969473 1 0.108920186758041 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631401 chr7:6631411 synonymous SNV . 0 31 hm5C_associated_SNPs_36609 0 0 1 0 2 C7orf26 chr7:6631498 5'GT 6631498 Upstream 88bp
chr7 6631411 6631411 1 + C T STAD 6631402 + 6631382 6631422 41 AGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCTT AGCCCTCAAGGGAACAAAGCCGATGACAGTCGGATGAGCTT < 41bp 1 0.387493202893219 1 0.466235280036926 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631402 chr7:6631411 synonymous SNV . 0 30 hm5C_associated_SNPs_36610 0 0 1 0 2 C7orf26 chr7:6631334 3'AG 6631334 Downstream 78bp
chr7 6631411 6631411 1 + C T STAD 6631402 + 6631382 6631422 41 AGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCTT AGCCCTCAAGGGAACAAAGCCGATGACAGTCGGATGAGCTT < 41bp 1 0.387493202893219 1 0.466235280036926 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631402 chr7:6631411 synonymous SNV . 0 30 hm5C_associated_SNPs_36610 0 0 1 0 2 C7orf26 chr7:6631498 5'GT 6631498 Upstream 88bp
chr1 153750649 153750649 1 + C T STAD 153750644 + 153750624 153750664 41 CCACTCATCTCAGAGCAAGGCAGAACGTGGCCATAAGGTCC CCACTCATCTCAGAGCAAGGCAGAATGTGGCCATAAGGTCC < 41bp 1 0.64805563857801 1 0.375772178173065 experiment 0.70388872284398 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750644 chr1:153750649 nonsynonymous SNV 0.125 0 26 hm5C_associated_SNPs_36611 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 13bp
chr1 153750649 153750649 1 + C T STAD 153750655 + 153750635 153750675 41 AGAGCAAGGCAGAACGTGGCCATAAGGTCCGGCTGGCAGTG AGAGCAAGGCAGAATGTGGCCATAAGGTCCGGCTGGCAGTG < 41bp 1 0.53406887726565 1 0.143854230642319 experiment 0.931862245468699 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750655 chr1:153750649 nonsynonymous SNV 0.125 0 15 hm5C_associated_SNPs_36612 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 13bp
chr1 153750649 153750649 1 + C T STAD 153750663 + 153750643 153750683 41 GCAGAACGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGG GCAGAATGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGG < 41bp 1 0.474216422563772 1 0.438252061605453 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750663 chr1:153750649 nonsynonymous SNV 0.125 0 7 hm5C_associated_SNPs_36613 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 13bp
chr1 153750649 153750649 1 + C T STAD 153750667 + 153750647 153750687 41 AACGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGGGCTG AATGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGGGCTG < 41bp 1 0.422405295036558 1 0.114519029855728 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750667 chr1:153750649 nonsynonymous SNV 0.125 0 3 hm5C_associated_SNPs_36614 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 13bp
chr7 4830445 4830445 1 + C T STAD 4830446 + 4830426 4830466 41 TGCTGCCCTGCCCAGGTGTCCCCCCCAGGTGGTCACCGTGC TGCTGCCCTGCCCAGGTGTTCCCCCCAGGTGGTCACCGTGC < 41bp 1 0.107627234741766 1 0.0138234794139862 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4830446 chr7:4830445 nonsynonymous SNV 0.020 0 20 hm5C_associated_SNPs_36615 0 0 1 0 1 AP5Z1 chr7:4830518 5'GT 4830518 Upstream 74bp
chr11 61916008 61916008 1 + G T STAD 61915991 + 61915971 61916011 41 CCCTGCGGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAG CCCTGCGGCTGCAGAAGGAGCAGCTGCAGAGGGAACTTGAG < 41bp 1 0.229969136579808 1 0.353312313556671 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61915991 chr11:61916008 synonymous SNV . 0 38 hm5C_associated_SNPs_36616 0 0 1 0 1 INCENP chr11:61915948 3'AG 61915948 Downstream 61bp
chr11 61916008 61916008 1 + G T STAD 61915994 + 61915974 61916014 41 TGCGGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAGGAG TGCGGCTGCAGAAGGAGCAGCTGCAGAGGGAACTTGAGGAG < 41bp 1 0.630575467098199 1 0.79191392660141 experiment 0.738849065803602 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61915994 chr11:61916008 synonymous SNV . 0 35 hm5C_associated_SNPs_36617 0 0 1 0 1 INCENP chr11:61915948 3'AG 61915948 Downstream 61bp
chr11 61916008 61916008 1 + G T STAD 61915997 + 61915977 61916017 41 GGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAGGAGAAG GGCTGCAGAAGGAGCAGCTGCAGAGGGAACTTGAGGAGAAG < 41bp 1 0.385332499852599 1 0.521219432353973 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61915997 chr11:61916008 synonymous SNV . 0 32 hm5C_associated_SNPs_36618 0 0 1 0 1 INCENP chr11:61915948 3'AG 61915948 Downstream 61bp
chr11 61916008 61916008 1 + G T STAD 61916006 + 61915986 61916026 41 AGGAGCAGCTGCAGAGGGAACTGGAGGAGAAGAAGAAGAAG AGGAGCAGCTGCAGAGGGAACTTGAGGAGAAGAAGAAGAAG < 41bp 1 0.562426667287602 1 0.491275995969772 experiment 0.875146665424796 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61916006 chr11:61916008 synonymous SNV . 0 23 hm5C_associated_SNPs_36619 0 0 1 0 1 INCENP chr11:61915948 3'AG 61915948 Downstream 61bp
chr13 92051399 92051399 1 + T C STAD 92051411 + 92051391 92051431 41 GAAGAAGTTCGGAAACTTTTCCAGTGGCGGCTGCTGGGAGC GAAGAAGTCCGGAAACTTTTCCAGTGGCGGCTGCTGGGAGC < 41bp 1 0.528162997127387 1 0.777970135211945 experiment 0.943674005745226 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPC5 ENSG00000179399 CDS Human protein_coding chr13:92051411 chr13:92051399 synonymous SNV . 0 9 hm5C_associated_SNPs_36623 0 0 0 0 1 GPC5 chr13:92051463 5'GT 92051463 Upstream 65bp
chr1 10381844 10381844 1 + C T STAD 10381855 + 10381835 10381875 41 ACTTCATTACGGGACTTACTCTGGGGCAATGCCGTGTACCT ACTTCATTATGGGACTTACTCTGGGGCAATGCCGTGTACCT < 41bp 1 0.78679199336697 1 0.946706831455231 experiment 0.42641601326606 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10381855 chr1:10381844 nonsynonymous SNV 0.998 4 10 hm5C_associated_SNPs_36625 0 0 1 0 2 KIF1B chr1:10381767 3'AG 10381767 Downstream 78bp
chr1 10381844 10381844 1 + C T STAD 10381855 + 10381835 10381875 41 ACTTCATTACGGGACTTACTCTGGGGCAATGCCGTGTACCT ACTTCATTATGGGACTTACTCTGGGGCAATGCCGTGTACCT < 41bp 1 0.78679199336697 1 0.946706831455231 experiment 0.42641601326606 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10381855 chr1:10381844 nonsynonymous SNV 0.998 4 10 hm5C_associated_SNPs_36625 0 0 1 0 2 KIF1B chr1:10381915 5'GT 10381915 Upstream 72bp
chr15 41650447 41650447 1 + T C STAD 41650441 + 41650421 41650461 41 CATTTTGAAGAACACAATTCCATGAATGAACTGAAGGTATG CATTTTGAAGAACACAATTCCATGAACGAACTGAAGGTATG < 41bp 1 0.465764527854641 1 0.162579774856567 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUSAP1 ENSG00000137804 CDS Human protein_coding chr15:41650441 chr15:41650447 synonymous SNV . 0 27 hm5C_associated_SNPs_36626 0 0 1 0 1 NUSAP1 chr15:41650456 5'GT 41650456 Upstream 10bp
chr7 142561975 142561975 1 + C T STAD 142561972 + 142561952 142561992 41 TACCGTCAGGCTGAGGAGCCCGACAGCCCTGACAGCGTTTC TACCGTCAGGCTGAGGAGCCCGATAGCCCTGACAGCGTTTC < 41bp 1 0.508976275243788 1 0.189951151609421 experiment 0.982047449512424 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142561972 chr7:142561975 synonymous SNV . 0 24 hm5C_associated_SNPs_36627 0 0 0 0 1 EPHB6 chr7:142562020 5'GT 142562020 Upstream 46bp
chr9 131559379 131559379 1 + C G STAD 131559385 + 131559365 131559405 41 AGGGCCACTGACTACCCTTGCCTCCTCATCCTGGACCCCCA AGGGCCACTGACTAGCCTTGCCTCCTCATCCTGGACCCCCA < 41bp 1 0.0494907716800402 1 0.0606066882610321 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D13 ENSG00000107021 CDS Human protein_coding chr9:131559385 chr9:131559379 stopgain 0.995 1 15 hm5C_associated_SNPs_36628 0 0 1 0 1 TBC1D13 chr9:131559334 3'AG 131559334 Downstream 46bp
chr19 11474845 11474845 1 + G T STAD 11474841 + 11474821 11474861 41 TGTCTCTTTGTCTCAGGAACCCGAGGTCTGCAGGCCGCATT TGTCTCTTTGTCTCAGGAACCCGATGTCTGCAGGCCGCATT < 41bp 1 0.311191252235678 1 0.705055117607117 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11474841 chr19:11474845 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_36629 0 0 1 0 2 PLPPR2 chr19:11474837 3'AG 11474837 Downstream 9bp
chr19 11474845 11474845 1 + G T STAD 11474841 + 11474821 11474861 41 TGTCTCTTTGTCTCAGGAACCCGAGGTCTGCAGGCCGCATT TGTCTCTTTGTCTCAGGAACCCGATGTCTGCAGGCCGCATT < 41bp 1 0.311191252235678 1 0.705055117607117 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11474841 chr19:11474845 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_36629 0 0 1 0 2 PLPPR2 chr19:11474888 5'GT 11474888 Upstream 44bp
chr14 64690024 64690024 1 + C T STAD 64690010 + 64689990 64690030 41 TGGAGAAGACTGTATTGAAGCTGAAGAAAAGGTGCATGTTA TGGAGAAGACTGTATTGAAGCTGAAGAAAAGGTGTATGTTA < 41bp 1 0.279939482486103 1 0.318186938762665 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64690010 chr14:64690024 nonsynonymous SNV 0.994 4 35 hm5C_associated_SNPs_36630 0 0 1 0 1 SYNE2 chr14:64690098 5'GT 64690098 Upstream 75bp
chr19 39860748 39860748 1 + G T STAD 39860763 + 39860743 39860783 41 TATTGGGAGCAATGCAAACACAGGTAAGTGGCGGGGGTGTC TATTGTGAGCAATGCAAACACAGGTAAGTGGCGGGGGTGTC < 41bp 1 0.685716643970976 1 0.491427361965179 experiment 0.628566712058049 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39860763 chr19:39860748 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_36631 0 0 1 0 1 SAMD4B chr19:39860765 5'GT 39860765 Upstream 18bp
chr11 47289880 47289880 1 + G A STAD 47289881 + 47289861 47289901 41 ATATGTGGAAGCCCTGCATGCCTACGTCTCCATCCACCATC ATATGTGGAAGCCCTGCATACCTACGTCTCCATCCACCATC < 41bp 1 0.0938778280830408 1 0.0124123990535736 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47289881 chr11:47289880 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_36632 0 0 1 0 2 NR1H3 chr11:47289812 3'AG 47289812 Downstream 69bp
chr11 47289880 47289880 1 + G A STAD 47289881 + 47289861 47289901 41 ATATGTGGAAGCCCTGCATGCCTACGTCTCCATCCACCATC ATATGTGGAAGCCCTGCATACCTACGTCTCCATCCACCATC < 41bp 1 0.0938778280830408 1 0.0124123990535736 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47289881 chr11:47289880 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_36632 0 0 1 0 2 NR1H3 chr11:47289906 5'GT 47289906 Upstream 27bp
chr17 80882895 80882895 1 + G A STAD 80882898 + 80882878 80882918 41 TCTCGTTGGCCTTGGGCGCCCTTCCAGGCTTCCTTCTGAAA TCTCGTTGGCCTTGGGCACCCTTCCAGGCTTCCTTCTGAAA < 41bp 1 0.144778535463784 1 0.0316500663757324 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBCD ENSG00000141556 CDS Human protein_coding chr17:80882898 chr17:80882895 nonsynonymous SNV 0.002 0 18 hm5C_associated_SNPs_36635 0 0 1 0 2 TBCD chr17:80882815 3'AG 80882815 Downstream 81bp
chr17 80882895 80882895 1 + G A STAD 80882898 + 80882878 80882918 41 TCTCGTTGGCCTTGGGCGCCCTTCCAGGCTTCCTTCTGAAA TCTCGTTGGCCTTGGGCACCCTTCCAGGCTTCCTTCTGAAA < 41bp 1 0.144778535463784 1 0.0316500663757324 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBCD ENSG00000141556 CDS Human protein_coding chr17:80882898 chr17:80882895 nonsynonymous SNV 0.002 0 18 hm5C_associated_SNPs_36635 0 0 1 0 2 TBCD chr17:80882933 5'GT 80882933 Upstream 39bp
chr2 179247234 179247234 1 + A C STAD 179247214 + 179247194 179247234 41 TGAAGACAACACCAGTGTTGCAGACAATATTTCTCGGCAAA TGAAGACAACACCAGTGTTGCAGACAATATTTCTCGGCAAC < 41bp 1 0.111278975663151 1 0.22565495967865 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179247214 chr2:179247234 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_36639 0 0 1 0 2 OSBPL6 chr2:179247147 3'AG 179247147 Downstream 88bp
chr2 179247234 179247234 1 + A C STAD 179247214 + 179247194 179247234 41 TGAAGACAACACCAGTGTTGCAGACAATATTTCTCGGCAAA TGAAGACAACACCAGTGTTGCAGACAATATTTCTCGGCAAC < 41bp 1 0.111278975663151 1 0.22565495967865 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179247214 chr2:179247234 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_36639 0 0 1 0 2 OSBPL6 chr2:179247234 5'GT 179247234 Upstream 1bp
chr7 97833476 97833476 1 + C T STAD 97833471 + 97833451 97833491 41 CCAGCTTTTCCCTCACACACCTGACCGACTCGGACATCGAG CCAGCTTTTCCCTCACACACCTGACTGACTCGGACATCGAG < 41bp 1 0.192860669807955 1 0.0559093952178955 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97833471 chr7:97833476 synonymous SNV . 0 26 hm5C_associated_SNPs_36640 0 0 1 0 1 LMTK2 chr7:97833498 5'GT 97833498 Upstream 23bp
chr14 45620674 45620674 1 + A G STAD 45620670 + 45620650 45620690 41 AAGGGATATCCCAAATCTAACAAAATATCAGATAATTCTGG AAGGGATATCCCAAATCTAACAAAGTATCAGATAATTCTGG < 41bp 1 0.266479346771632 1 0.378987312316895 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FANCM ENSG00000187790 CDS Human protein_coding chr14:45620670 chr14:45620674 synonymous SNV . 0 25 hm5C_associated_SNPs_36648 0 0 1 0 2 FANCM chr14:45620600 3'AG 45620600 Downstream 75bp
chr14 45620674 45620674 1 + A G STAD 45620670 + 45620650 45620690 41 AAGGGATATCCCAAATCTAACAAAATATCAGATAATTCTGG AAGGGATATCCCAAATCTAACAAAGTATCAGATAATTCTGG < 41bp 1 0.266479346771632 1 0.378987312316895 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FANCM ENSG00000187790 CDS Human protein_coding chr14:45620670 chr14:45620674 synonymous SNV . 0 25 hm5C_associated_SNPs_36648 0 0 1 0 2 FANCM chr14:45620731 5'GT 45620731 Upstream 58bp
chr2 211465372 211465372 1 + A C STAD 211465360 + 211465340 211465380 41 AGTTGAGTCCATTATGGCTACGGAAGACAGGCAGCTGTTTT AGTTGAGTCCATTATGGCTACGGAAGACAGGCCGCTGTTTT < 41bp 1 0.566991015834297 1 0.845588386058807 experiment 0.866017968331407 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPS1 ENSG00000021826 CDS Human protein_coding chr2:211465360 chr2:211465372 nonsynonymous SNV 0.998 3 33 hm5C_associated_SNPs_36649 0 0 1 0 2 CPS1 chr2:211465279 3'AG 211465279 Downstream 94bp
chr2 211465372 211465372 1 + A C STAD 211465360 + 211465340 211465380 41 AGTTGAGTCCATTATGGCTACGGAAGACAGGCAGCTGTTTT AGTTGAGTCCATTATGGCTACGGAAGACAGGCCGCTGTTTT < 41bp 1 0.566991015834297 1 0.845588386058807 experiment 0.866017968331407 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPS1 ENSG00000021826 CDS Human protein_coding chr2:211465360 chr2:211465372 nonsynonymous SNV 0.998 3 33 hm5C_associated_SNPs_36649 0 0 1 0 2 CPS1 chr2:211465436 5'GT 211465436 Upstream 65bp
chrX 153627879 153627879 1 + A G STAD 153627896 + 153627876 153627916 41 ATGAGTTTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT ATGGGTTTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT < 41bp 1 0.274220392105354 1 0.390862345695496 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627896 chrX:153627879 nonsynonymous SNV 0.985 1 4 hm5C_associated_SNPs_36650 0 0 1 0 2 RPL10 chrX:153627828 3'AG 153627828 Downstream 52bp
chrX 153627879 153627879 1 + A G STAD 153627896 + 153627876 153627916 41 ATGAGTTTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT ATGGGTTTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT < 41bp 1 0.274220392105354 1 0.390862345695496 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627896 chrX:153627879 nonsynonymous SNV 0.985 1 4 hm5C_associated_SNPs_36650 0 0 1 0 2 RPL10 chrX:153627935 5'GT 153627935 Upstream 57bp
chr10 17275857 17275857 1 + G A STAD 17275853 + 17275833 17275873 41 AGCCTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAA AGCCTGACCTCACGGCTGCCCTGCATGACGTACGTCAGCAA < 41bp 1 0.785660662917816 1 0.899891793727875 experiment 0.428678674164368 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275853 chr10:17275857 nonsynonymous SNV 0.814 3 25 hm5C_associated_SNPs_36652 0 0 1 1 2 VIM chr10:17275769 3'AG 17275769 Downstream 89bp
chr10 17275857 17275857 1 + G A STAD 17275853 + 17275833 17275873 41 AGCCTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAA AGCCTGACCTCACGGCTGCCCTGCATGACGTACGTCAGCAA < 41bp 1 0.785660662917816 1 0.899891793727875 experiment 0.428678674164368 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275853 chr10:17275857 nonsynonymous SNV 0.814 3 25 hm5C_associated_SNPs_36652 0 0 1 1 2 VIM chr10:17275930 5'GT 17275930 Upstream 74bp
chr10 17275857 17275857 1 + G A STAD 17275856 + 17275836 17275876 41 CTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAATAT CTGACCTCACGGCTGCCCTGCATGACGTACGTCAGCAATAT < 41bp 1 0.350498423124269 1 0.0388129055500031 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275856 chr10:17275857 nonsynonymous SNV 0.814 3 22 hm5C_associated_SNPs_36653 0 0 1 1 2 VIM chr10:17275769 3'AG 17275769 Downstream 89bp
chr10 17275857 17275857 1 + G A STAD 17275856 + 17275836 17275876 41 CTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAATAT CTGACCTCACGGCTGCCCTGCATGACGTACGTCAGCAATAT < 41bp 1 0.350498423124269 1 0.0388129055500031 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275856 chr10:17275857 nonsynonymous SNV 0.814 3 22 hm5C_associated_SNPs_36653 0 0 1 1 2 VIM chr10:17275930 5'GT 17275930 Upstream 74bp
chr10 17275857 17275857 1 + G A STAD 17275861 + 17275841 17275881 41 CTCACGGCTGCCCTGCGTGACGTACGTCAGCAATATGAAAG CTCACGGCTGCCCTGCATGACGTACGTCAGCAATATGAAAG < 41bp 1 0.134036298459383 1 0.0206911563873291 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275861 chr10:17275857 nonsynonymous SNV 0.814 3 17 hm5C_associated_SNPs_36654 0 0 1 1 2 VIM chr10:17275769 3'AG 17275769 Downstream 89bp
chr10 17275857 17275857 1 + G A STAD 17275861 + 17275841 17275881 41 CTCACGGCTGCCCTGCGTGACGTACGTCAGCAATATGAAAG CTCACGGCTGCCCTGCATGACGTACGTCAGCAATATGAAAG < 41bp 1 0.134036298459383 1 0.0206911563873291 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275861 chr10:17275857 nonsynonymous SNV 0.814 3 17 hm5C_associated_SNPs_36654 0 0 1 1 2 VIM chr10:17275930 5'GT 17275930 Upstream 74bp
chr15 75644698 75644698 1 + G A STAD 75644692 + 75644672 75644712 41 ATCCCCCCCTTTGAGAAGGCCCGCTCGGTCCTGGAGGCCCT ATCCCCCCCTTTGAGAAGGCCCGCTCAGTCCTGGAGGCCCT < 41bp 1 0.136117740877959 1 0.0340611934661865 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NEIL1 ENSG00000140398 CDS Human protein_coding chr15:75644692 chr15:75644698 synonymous SNV . 0 27 hm5C_associated_SNPs_36655 0 0 1 0 2 NEIL1 chr15:75644665 3'AG 75644665 Downstream 34bp
chr15 75644698 75644698 1 + G A STAD 75644692 + 75644672 75644712 41 ATCCCCCCCTTTGAGAAGGCCCGCTCGGTCCTGGAGGCCCT ATCCCCCCCTTTGAGAAGGCCCGCTCAGTCCTGGAGGCCCT < 41bp 1 0.136117740877959 1 0.0340611934661865 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NEIL1 ENSG00000140398 CDS Human protein_coding chr15:75644692 chr15:75644698 synonymous SNV . 0 27 hm5C_associated_SNPs_36655 0 0 1 0 2 NEIL1 chr15:75644728 5'GT 75644728 Upstream 31bp
chr3 40503441 40503441 1 + A G STAD 40503435 + 40503415 40503455 41 ATTGATAATTTTCAGAGGAACAGAATAATCAAGAATGAAGT ATTGATAATTTTCAGAGGAACAGAATGATCAAGAATGAAGT < 41bp 1 0.56318716955211 1 0.217792958021164 experiment 0.87362566089578 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL14 ENSG00000188846 CDS Human other chr3:40503435 chr3:40503441 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_36656 0 0 1 0 1 RPL14 chr3:40503430 3'AG 40503430 Downstream 12bp
chr17 54939226 54939226 1 + C T STAD 54939235 + 54939215 54939255 41 GGATACTGGGGCGGTGGCTGCAGACTATGGGAAGGGATGGG GGATACTGGGGTGGTGGCTGCAGACTATGGGAAGGGATGGG < 41bp 1 0.413928132916666 1 0.686980009078979 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DGKE ENSG00000153933 CDS Human protein_coding chr17:54939235 chr17:54939226 synonymous SNV . 0 12 hm5C_associated_SNPs_36657 0 0 0 0 2 DGKE chr17:54939152 3'AG 54939152 Downstream 75bp
chr17 54939226 54939226 1 + C T STAD 54939235 + 54939215 54939255 41 GGATACTGGGGCGGTGGCTGCAGACTATGGGAAGGGATGGG GGATACTGGGGTGGTGGCTGCAGACTATGGGAAGGGATGGG < 41bp 1 0.413928132916666 1 0.686980009078979 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DGKE ENSG00000153933 CDS Human protein_coding chr17:54939235 chr17:54939226 synonymous SNV . 0 12 hm5C_associated_SNPs_36657 0 0 0 0 2 DGKE chr17:54939279 5'GT 54939279 Upstream 54bp
chr9 135919198 135919198 1 + C T STAD 135919215 + 135919195 135919235 41 CTCCGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC CTCTGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC < 41bp 1 0.0473291825903677 1 0.0222498178482056 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919215 chr9:135919198 nonsynonymous SNV 0.355 4 4 hm5C_associated_SNPs_36658 0 0 1 0 1 GTF3C5 chr9:135919115 3'AG 135919115 Downstream 84bp
chr17 40766006 40766006 1 + C T STAD 40765994 + 40765974 40766014 41 CTTCCTCATGACCGGCTACACCCCTCTCACTACGGACCAGT CTTCCTCATGACCGGCTACACCCCTCTCACTATGGACCAGT < 41bp 1 0.198056170796745 1 0.0560669302940369 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG1 ENSG00000131462 CDS Human protein_coding chr17:40765994 chr17:40766006 nonsynonymous SNV 0.995 2 33 hm5C_associated_SNPs_36659 0 0 1 0 1 TUBG1 chr17:40766016 5'GT 40766016 Upstream 11bp
chr12 53412624 53412624 1 + C T STAD 53412626 + 53412606 53412646 41 ATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATC ATGACGATGTGTATAGGGTGCCTCCAATTGACCGTTCCATC < 41bp 1 0.0487802888534532 1 0.0350538492202759 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412626 chr12:53412624 nonsynonymous SNV 0.998 2 19 hm5C_associated_SNPs_36661 0 0 1 0 1 EIF4B chr12:53412582 3'AG 53412582 Downstream 43bp
chr5 17275368 17275368 1 + A T STAD 17275370 + 17275350 17275390 41 AAGAAGGGCTACAATGTGAACGACGAGAAAGCCAAGGAGAA AAGAAGGGCTACAATGTGTACGACGAGAAAGCCAAGGAGAA < 41bp 1 0.530894272975362 1 0.257725894451141 experiment 0.938211454049276 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275370 chr5:17275368 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_36663 0 0 1 0 1 BASP1 chr5:17275317 3'AG 17275317 Downstream 52bp
chr5 17275368 17275368 1 + A T STAD 17275373 + 17275353 17275393 41 AAGGGCTACAATGTGAACGACGAGAAAGCCAAGGAGAAAGA AAGGGCTACAATGTGTACGACGAGAAAGCCAAGGAGAAAGA < 41bp 1 0.730522158135867 1 0.454726219177246 experiment 0.538955683728267 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275373 chr5:17275368 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_36664 0 0 1 0 1 BASP1 chr5:17275317 3'AG 17275317 Downstream 52bp
chr5 17275368 17275368 1 + A T STAD 17275381 + 17275361 17275401 41 CAATGTGAACGACGAGAAAGCCAAGGAGAAAGACAAGAAGG CAATGTGTACGACGAGAAAGCCAAGGAGAAAGACAAGAAGG < 41bp 1 0.389288501123678 1 0.482883363962173 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275381 chr5:17275368 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_36665 0 0 1 0 1 BASP1 chr5:17275317 3'AG 17275317 Downstream 52bp
chr7 73922447 73922447 1 + A G STAD 73922440 + 73922420 73922460 41 CTGGGTAAGCGCTGTGACGTCCCCACCAACGGCTGCGGACC CTGGGTAAGCGCTGTGACGTCCCCACCGACGGCTGCGGACC < 41bp 1 0.606933431217317 1 0.227782070636749 experiment 0.786133137565367 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73922440 chr7:73922447 nonsynonymous SNV 0.991 1 28 hm5C_associated_SNPs_36667 0 0 1 0 2 GTF2IRD1 chr7:73922405 3'AG 73922405 Downstream 43bp
chr7 73922447 73922447 1 + A G STAD 73922440 + 73922420 73922460 41 CTGGGTAAGCGCTGTGACGTCCCCACCAACGGCTGCGGACC CTGGGTAAGCGCTGTGACGTCCCCACCGACGGCTGCGGACC < 41bp 1 0.606933431217317 1 0.227782070636749 experiment 0.786133137565367 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73922440 chr7:73922447 nonsynonymous SNV 0.991 1 28 hm5C_associated_SNPs_36667 0 0 1 0 2 GTF2IRD1 chr7:73922533 5'GT 73922533 Upstream 87bp
chr9 20923662 20923662 1 + G A STAD 20923667 + 20923647 20923687 41 CCTTTTGAACAGGGAGAGTCCGGTAGTGAAAGGCAATGCGC CCTTTTGAACAGGGAAAGTCCGGTAGTGAAAGGCAATGCGC < 41bp 1 0.544126159218995 1 0.217327535152435 experiment 0.91174768156201 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20923667 chr9:20923662 synonymous SNV . 0 16 hm5C_associated_SNPs_36668 0 0 0 0 1 FOCAD chr9:20923659 3'AG 20923659 Downstream 4bp
chr2 172950706 172950706 1 + C G STAD 172950693 + 172950673 172950713 41 TACCCGGGCAGCGCCAGCCTCGCCCAGAGCCGCCTGGAGGA TACCCGGGCAGCGCCAGCCTCGCCCAGAGCCGCGTGGAGGA < 41bp 1 0.554187879675336 1 0.476779729127884 experiment 0.891624240649328 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DLX1 ENSG00000144355 CDS Human protein_coding chr2:172950693 chr2:172950706 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_36670 0 0 0 0 1 DLX1 chr2:172950718 5'GT 172950718 Upstream 13bp
chr19 34302362 34302362 1 + G A STAD 34302343 + 34302323 34302363 41 AAGGCCCTCATCGAGGAGGTCTTCCCCGAGACCGGAGACGT AAGGCCCTCATCGAGGAGGTCTTCCCCGAGACCGGAGACAT < 41bp 1 0.106459613830198 1 0.0284124612808228 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34302343 chr19:34302362 nonsynonymous SNV 0.992 1 40 hm5C_associated_SNPs_36671 0 0 1 0 1 KCTD15 chr19:34302457 5'GT 34302457 Upstream 96bp
chr5 10411480 10411480 1 + A T STAD 10411473 + 10411453 10411493 41 ATTCTTATTTATTGGGAGACCAGGAAGAAAATGAAAACAGT ATTCTTATTTATTGGGAGACCAGGAAGTAAATGAAAACAGT < 41bp 1 0.610842285006508 1 0.746097505092621 experiment 0.778315429986984 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10411473 chr5:10411480 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_36674 0 0 1 0 1 MARCH6 chr5:10411445 3'AG 10411445 Downstream 36bp
chr6 4935819 4935819 1 + G C STAD 4935806 + 4935786 4935826 41 GACAACCAACATACAGACATCTGTTACAGGAGTGACTGCCA GACAACCAACATACAGACATCTGTTACAGGAGTCACTGCCA < 41bp 1 0.167845055446609 1 0.0683037638664246 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CDYL ENSG00000153046 CDS Human protein_coding chr6:4935806 chr6:4935819 synonymous SNV . 0 34 hm5C_associated_SNPs_36675 0 0 1 0 1 CDYL chr6:4935749 3'AG 4935749 Downstream 71bp
chr4 110442692 110442692 1 + C T STAD 110442700 + 110442680 110442720 41 TCCAACAGGTGGCCGTGTGTCTGTATTTCAGACACAGTTAC TCCAACAGGTGGTCGTGTGTCTGTATTTCAGACACAGTTAC < 41bp 1 0.78002560295709 1 0.444793611764908 experiment 0.439948794085819 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SEC24B ENSG00000138802 CDS Human protein_coding chr4:110442700 chr4:110442692 synonymous SNV . 0 13 hm5C_associated_SNPs_36676 0 0 1 0 1 SEC24B chr4:110442782 5'GT 110442782 Upstream 91bp
chr2 113243554 113243554 1 + G A STAD 113243539 + 113243519 113243559 41 GGTGAATTACTACAGGGGTGCTGACAAACTGTGTCGCAAAG GGTGAATTACTACAGGGGTGCTGACAAACTGTGTCACAAAG < 41bp 1 0.233849102905228 1 0.263939380645752 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113243539 chr2:113243554 nonsynonymous SNV 0.999 3 36 hm5C_associated_SNPs_36677 0 0 1 0 2 TTL chr2:113243494 3'AG 113243494 Downstream 61bp
chr2 113243554 113243554 1 + G A STAD 113243539 + 113243519 113243559 41 GGTGAATTACTACAGGGGTGCTGACAAACTGTGTCGCAAAG GGTGAATTACTACAGGGGTGCTGACAAACTGTGTCACAAAG < 41bp 1 0.233849102905228 1 0.263939380645752 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113243539 chr2:113243554 nonsynonymous SNV 0.999 3 36 hm5C_associated_SNPs_36677 0 0 1 0 2 TTL chr2:113243572 5'GT 113243572 Upstream 19bp
chr17 79671731 79671731 1 + T A STAD 79671721 + 79671701 79671741 41 GGGTGGTGTGATGTCTGGGGCTGTCCCTGCTGCAGCAGCCC GGGTGGTGTGATGTCTGGGGCTGTCCCTGCAGCAGCAGCCC < 41bp 1 0.134547218820016 1 0.0547695755958557 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79671721 chr17:79671731 synonymous SNV . 0 31 hm5C_associated_SNPs_36678 0 0 1 0 2 MRPL12 chr17:79671663 3'AG 79671663 Downstream 69bp
chr17 79671731 79671731 1 + T A STAD 79671721 + 79671701 79671741 41 GGGTGGTGTGATGTCTGGGGCTGTCCCTGCTGCAGCAGCCC GGGTGGTGTGATGTCTGGGGCTGTCCCTGCAGCAGCAGCCC < 41bp 1 0.134547218820016 1 0.0547695755958557 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79671721 chr17:79671731 synonymous SNV . 0 31 hm5C_associated_SNPs_36678 0 0 1 0 2 MRPL12 chr17:79671746 5'GT 79671746 Upstream 16bp
chr7 45662269 45662269 1 + C T STAD 45662274 + 45662254 45662294 41 GTTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG GTTTCACGGGCTTGGTATCCCAGTGCACAGCCCAGGAGCTG < 41bp 1 0.437669760993086 1 0.746009945869446 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45662274 chr7:45662269 nonsynonymous SNV 0.925 5 16 hm5C_associated_SNPs_36679 0 0 1 0 2 ADCY1 chr7:45662231 3'AG 45662231 Downstream 39bp
chr7 45662269 45662269 1 + C T STAD 45662274 + 45662254 45662294 41 GTTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG GTTTCACGGGCTTGGTATCCCAGTGCACAGCCCAGGAGCTG < 41bp 1 0.437669760993086 1 0.746009945869446 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45662274 chr7:45662269 nonsynonymous SNV 0.925 5 16 hm5C_associated_SNPs_36679 0 0 1 0 2 ADCY1 chr7:45662342 5'GT 45662342 Upstream 74bp
chr5 178987036 178987036 1 + C T STAD 178987020 + 178987000 178987040 41 AAGCTATCCCTGCTCCTGCCCCACAGCTTCTAAGTGCCAGA AAGCTATCCCTGCTCCTGCCCCACAGCTTCTAAGTGTCAGA < 41bp 1 0.319738094528937 1 0.0638091862201691 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RUFY1 ENSG00000176783 CDS Human protein_coding chr5:178987020 chr5:178987036 synonymous SNV . 0 37 hm5C_associated_SNPs_36680 0 0 1 0 1 RUFY1 chr5:178987026 3'AG 178987026 Downstream 11bp
chr12 53428437 53428437 1 + G A STAD 53428436 + 53428416 53428456 41 AAGAAACTCAGGAACGGGAACGGTCGAGGACAGGAAGTGAG AAGAAACTCAGGAACGGGAACAGTCGAGGACAGGAAGTGAG < 41bp 1 0.205370593109842 1 0.39372307062149 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53428436 chr12:53428437 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_36681 0 0 1 0 2 EIF4B chr12:53428396 3'AG 53428396 Downstream 42bp
chr12 53428437 53428437 1 + G A STAD 53428436 + 53428416 53428456 41 AAGAAACTCAGGAACGGGAACGGTCGAGGACAGGAAGTGAG AAGAAACTCAGGAACGGGAACAGTCGAGGACAGGAAGTGAG < 41bp 1 0.205370593109842 1 0.39372307062149 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53428436 chr12:53428437 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_36681 0 0 1 0 2 EIF4B chr12:53428493 5'GT 53428493 Upstream 57bp
chr17 38450699 38450699 1 + T C STAD 38450687 + 38450667 38450707 41 CTAGAGAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCT CTAGAGAAAAATGTAAGCCACAGCTGTTGAACCTCCCACCT < 41bp 1 0.549150311887523 1 0.273159265518188 experiment 0.901699376224953 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDC6 ENSG00000094804 CDS Human protein_coding chr17:38450687 chr17:38450699 nonsynonymous SNV 0.999 4 33 hm5C_associated_SNPs_36683 0 0 1 0 2 CDC6 chr17:38450616 3'AG 38450616 Downstream 84bp
chr17 38450699 38450699 1 + T C STAD 38450687 + 38450667 38450707 41 CTAGAGAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCT CTAGAGAAAAATGTAAGCCACAGCTGTTGAACCTCCCACCT < 41bp 1 0.549150311887523 1 0.273159265518188 experiment 0.901699376224953 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDC6 ENSG00000094804 CDS Human protein_coding chr17:38450687 chr17:38450699 nonsynonymous SNV 0.999 4 33 hm5C_associated_SNPs_36683 0 0 1 0 2 CDC6 chr17:38450755 5'GT 38450755 Upstream 57bp
chr3 57293966 57293966 1 + G A STAD 57293965 + 57293945 57293985 41 ATGTTGTTTATGAAACTATGCGCCAAATCTTAGCTGCCCGG ATGTTGTTTATGAAACTATGCACCAAATCTTAGCTGCCCGG < 41bp 1 0.730041930426476 1 0.0713810622692108 experiment 0.539916139147048 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control APPL1 ENSG00000157500 CDS Human protein_coding chr3:57293965 chr3:57293966 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_36684 0 0 1 0 2 APPL1 chr3:57293873 3'AG 57293873 Downstream 94bp
chr3 57293966 57293966 1 + G A STAD 57293965 + 57293945 57293985 41 ATGTTGTTTATGAAACTATGCGCCAAATCTTAGCTGCCCGG ATGTTGTTTATGAAACTATGCACCAAATCTTAGCTGCCCGG < 41bp 1 0.730041930426476 1 0.0713810622692108 experiment 0.539916139147048 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control APPL1 ENSG00000157500 CDS Human protein_coding chr3:57293965 chr3:57293966 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_36684 0 0 1 0 2 APPL1 chr3:57294047 5'GT 57294047 Upstream 82bp
chr2 233128133 233128133 1 + G A STAD 233128132 + 233128112 233128152 41 CAGCAGCGCTTTGTGGACGGCGCACTTCGTTTGGATCAGGT CAGCAGCGCTTTGTGGACGGCACACTTCGTTTGGATCAGGT < 41bp 1 0.112527852373767 1 0.179320394992828 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DIS3L2 ENSG00000144535 CDS Human protein_coding chr2:233128132 chr2:233128133 nonsynonymous SNV 0.703 4 22 hm5C_associated_SNPs_36687 0 0 0 0 1 DIS3L2 chr2:233128150 5'GT 233128150 Upstream 18bp
chr7 73636001 73636001 1 + C T STAD 73636013 + 73635993 73636033 41 ACTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAG ACTGGGGGTGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAG < 41bp 1 0.141221407326825 1 0.202085256576538 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636013 chr7:73636001 nonsynonymous SNV 0.028 0 9 hm5C_associated_SNPs_36690 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 35bp
chr7 73636001 73636001 1 + C T STAD 73636013 + 73635993 73636033 41 ACTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAG ACTGGGGGTGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAG < 41bp 1 0.141221407326825 1 0.202085256576538 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636013 chr7:73636001 nonsynonymous SNV 0.028 0 9 hm5C_associated_SNPs_36690 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 22bp
chr7 73636001 73636001 1 + C T STAD 73636014 + 73635994 73636034 41 CTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGG CTGGGGGTGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGG < 41bp 1 0.502011129620644 1 0.31222477555275 experiment 0.995977740758712 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636014 chr7:73636001 nonsynonymous SNV 0.028 0 8 hm5C_associated_SNPs_36691 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 35bp
chr7 73636001 73636001 1 + C T STAD 73636014 + 73635994 73636034 41 CTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGG CTGGGGGTGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGG < 41bp 1 0.502011129620644 1 0.31222477555275 experiment 0.995977740758712 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636014 chr7:73636001 nonsynonymous SNV 0.028 0 8 hm5C_associated_SNPs_36691 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 22bp
chr7 73636001 73636001 1 + C T STAD 73636015 + 73635995 73636035 41 TGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGA TGGGGGTGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGA < 41bp 1 0.218000826146943 1 0.301795840263367 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636015 chr7:73636001 nonsynonymous SNV 0.028 0 7 hm5C_associated_SNPs_36692 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 35bp
chr7 73636001 73636001 1 + C T STAD 73636015 + 73635995 73636035 41 TGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGA TGGGGGTGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGA < 41bp 1 0.218000826146943 1 0.301795840263367 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636015 chr7:73636001 nonsynonymous SNV 0.028 0 7 hm5C_associated_SNPs_36692 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 22bp
chr7 73636001 73636001 1 + C T STAD 73636016 + 73635996 73636036 41 GGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGAC GGGGGTGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGAC < 41bp 1 0.509186709011271 1 0.467643439769745 experiment 0.981626581977458 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636016 chr7:73636001 nonsynonymous SNV 0.028 0 6 hm5C_associated_SNPs_36693 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 35bp
chr7 73636001 73636001 1 + C T STAD 73636016 + 73635996 73636036 41 GGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGAC GGGGGTGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGAC < 41bp 1 0.509186709011271 1 0.467643439769745 experiment 0.981626581977458 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636016 chr7:73636001 nonsynonymous SNV 0.028 0 6 hm5C_associated_SNPs_36693 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 22bp
chr7 73636001 73636001 1 + C T STAD 73636017 + 73635997 73636037 41 GGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGACA GGGGTGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGACA < 41bp 1 0.635198083731814 1 0.877565503120422 experiment 0.729603832536372 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636017 chr7:73636001 nonsynonymous SNV 0.028 0 5 hm5C_associated_SNPs_36694 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 35bp
chr7 73636001 73636001 1 + C T STAD 73636017 + 73635997 73636037 41 GGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGACA GGGGTGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGACA < 41bp 1 0.635198083731814 1 0.877565503120422 experiment 0.729603832536372 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636017 chr7:73636001 nonsynonymous SNV 0.028 0 5 hm5C_associated_SNPs_36694 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 22bp
chr6 31713064 31713064 1 + C T STAD 31713049 + 31713029 31713069 41 TAAGAGTGAGTCTCACCCCTCAGTGTACAAAGTGGCCAGTG TAAGAGTGAGTCTCACCCCTCAGTGTACAAAGTGGTCAGTG < 41bp 1 0.339088730112347 1 0.407576620578766 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MSH5 ENSG00000204410;ENSG00000255152 CDS Human other chr6:31713049 chr6:31713064 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_36695 0 0 1 0 1 MSH5 chr6:31713096 5'GT 31713096 Upstream 33bp
chr2 32958941 32958941 1 + G A STAD 32958943 + 32958923 32958963 41 CTACATCTGTATTGGAACGCCTGAAGATTTTCTATTGCTGT CTACATCTGTATTGGAACACCTGAAGATTTTCTATTGCTGT < 41bp 1 0.610138929058942 1 0.490734308958054 experiment 0.779722141882117 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32958943 chr2:32958941 nonsynonymous SNV 0.995 4 19 hm5C_associated_SNPs_36696 0 0 1 0 2 TTC27 chr2:32958895 3'AG 32958895 Downstream 47bp
chr2 32958941 32958941 1 + G A STAD 32958943 + 32958923 32958963 41 CTACATCTGTATTGGAACGCCTGAAGATTTTCTATTGCTGT CTACATCTGTATTGGAACACCTGAAGATTTTCTATTGCTGT < 41bp 1 0.610138929058942 1 0.490734308958054 experiment 0.779722141882117 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32958943 chr2:32958941 nonsynonymous SNV 0.995 4 19 hm5C_associated_SNPs_36696 0 0 1 0 2 TTC27 chr2:32958990 5'GT 32958990 Upstream 50bp
chr22 20128442 20128442 1 + G A STAD 20128461 + 20128441 20128481 41 CGCCTTTCCTTAGGCCTGAACTCCTGGACCGAGCTGCACCG CACCTTTCCTTAGGCCTGAACTCCTGGACCGAGCTGCACCG < 41bp 1 0.338128153302846 1 0.761453866958618 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZDHHC8 ENSG00000099904 CDS Human protein_coding chr22:20128461 chr22:20128442 synonymous SNV . 0 2 hm5C_associated_SNPs_36697 0 0 1 0 2 ZDHHC8 chr22:20128394 3'AG 20128394 Downstream 49bp
chr22 20128442 20128442 1 + G A STAD 20128461 + 20128441 20128481 41 CGCCTTTCCTTAGGCCTGAACTCCTGGACCGAGCTGCACCG CACCTTTCCTTAGGCCTGAACTCCTGGACCGAGCTGCACCG < 41bp 1 0.338128153302846 1 0.761453866958618 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZDHHC8 ENSG00000099904 CDS Human protein_coding chr22:20128461 chr22:20128442 synonymous SNV . 0 2 hm5C_associated_SNPs_36697 0 0 1 0 2 ZDHHC8 chr22:20128535 5'GT 20128535 Upstream 94bp
chr6 142758632 142758632 1 + G A STAD 142758630 + 142758610 142758650 41 ATGTTCAGAAACAGTGGCGGCAGCATCTCTGCTGTGGTAGA ATGTTCAGAAACAGTGGCGGCAACATCTCTGCTGTGGTAGA < 41bp 1 0.298930727539019 1 0.253793001174927 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRG6 ENSG00000112414 CDS Human protein_coding chr6:142758630 chr6:142758632 synonymous SNV . 0 23 hm5C_associated_SNPs_36698 0 0 1 0 2 ADGRG6 chr6:142758571 3'AG 142758571 Downstream 62bp
chr6 142758632 142758632 1 + G A STAD 142758630 + 142758610 142758650 41 ATGTTCAGAAACAGTGGCGGCAGCATCTCTGCTGTGGTAGA ATGTTCAGAAACAGTGGCGGCAACATCTCTGCTGTGGTAGA < 41bp 1 0.298930727539019 1 0.253793001174927 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRG6 ENSG00000112414 CDS Human protein_coding chr6:142758630 chr6:142758632 synonymous SNV . 0 23 hm5C_associated_SNPs_36698 0 0 1 0 2 ADGRG6 chr6:142758672 5'GT 142758672 Upstream 41bp
chr19 13010517 13010517 1 + T G STAD 13010519 + 13010499 13010539 41 ATTTCCCTTCTGAAGTCGTTCAGATGTGTTCCTTAAAAAGA ATTTCCCTTCTGAAGTCGGTCAGATGTGTTCCTTAAAAAGA < 41bp 1 0.355597148022588 1 0.355500847101212 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13010519 chr19:13010517 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_36699 0 0 1 1 1 GCDH chr19:13010514 3'AG 13010514 Downstream 4bp
chr1 229783427 229783427 1 + G T STAD 229783428 + 229783408 229783448 41 TCCCTTTGGACCATCTGAAGCCGCTGGAGTATGGAAGCGTC TCCCTTTGGACCATCTGAATCCGCTGGAGTATGGAAGCGTC < 41bp 1 0.381265123141236 1 0.47354257106781 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control URB2 ENSG00000135763 CDS Human protein_coding chr1:229783428 chr1:229783427 nonsynonymous SNV 0.243 0 20 hm5C_associated_SNPs_36700 0 0 1 0 1 URB2 chr1:229783499 5'GT 229783499 Upstream 73bp
chr15 69728955 69728955 1 + C T STAD 69728947 + 69728927 69728967 41 TGCAGAGTTTTCCACCTTTGCCATCATGCGAAATTTTGGAT TGCAGAGTTTTCCACCTTTGCCATCATGTGAAATTTTGGAT < 41bp 1 0.0601188435436476 1 0.334998786449432 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69728947 chr15:69728955 synonymous SNV . 0 29 hm5C_associated_SNPs_36702 0 0 1 0 1 KIF23 chr15:69728903 3'AG 69728903 Downstream 53bp
chr15 69728955 69728955 1 + C T STAD 69728948 + 69728928 69728968 41 GCAGAGTTTTCCACCTTTGCCATCATGCGAAATTTTGGATA GCAGAGTTTTCCACCTTTGCCATCATGTGAAATTTTGGATA < 41bp 1 0.581300220695014 1 0.118599593639374 experiment 0.837399558609972 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69728948 chr15:69728955 synonymous SNV . 0 28 hm5C_associated_SNPs_36703 0 0 1 0 1 KIF23 chr15:69728903 3'AG 69728903 Downstream 53bp
chr1 109811556 109811556 1 + G A STAD 109811544 + 109811524 109811564 41 CAAAGGGAACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGG CAAAGGGAACTTTGCTGGGGCCAAGCTGCCCCACTACGAGG < 41bp 1 0.0465874024391999 1 0.0904102325439453 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811544 chr1:109811556 nonsynonymous SNV 0.994 1 33 hm5C_associated_SNPs_36704 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 55bp
chr1 109811556 109811556 1 + G A STAD 109811544 + 109811524 109811564 41 CAAAGGGAACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGG CAAAGGGAACTTTGCTGGGGCCAAGCTGCCCCACTACGAGG < 41bp 1 0.0465874024391999 1 0.0904102325439453 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811544 chr1:109811556 nonsynonymous SNV 0.994 1 33 hm5C_associated_SNPs_36704 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 75bp
chr1 109811556 109811556 1 + G A STAD 109811552 + 109811532 109811572 41 ACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGT ACTTTGCTGGGGCCAAGCTGCCCCACTACGAGGCCCTGCGT < 41bp 1 0.32696877835384 1 0.0983926057815552 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811552 chr1:109811556 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_36705 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 55bp
chr1 109811556 109811556 1 + G A STAD 109811552 + 109811532 109811572 41 ACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGT ACTTTGCTGGGGCCAAGCTGCCCCACTACGAGGCCCTGCGT < 41bp 1 0.32696877835384 1 0.0983926057815552 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811552 chr1:109811556 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_36705 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 75bp
chr1 109811556 109811556 1 + G A STAD 109811553 + 109811533 109811573 41 CTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTG CTTTGCTGGGGCCAAGCTGCCCCACTACGAGGCCCTGCGTG < 41bp 1 0.110597602597988 1 0.21556481719017 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811553 chr1:109811556 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_36706 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 55bp
chr1 109811556 109811556 1 + G A STAD 109811553 + 109811533 109811573 41 CTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTG CTTTGCTGGGGCCAAGCTGCCCCACTACGAGGCCCTGCGTG < 41bp 1 0.110597602597988 1 0.21556481719017 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811553 chr1:109811556 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_36706 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 75bp
chr1 109811556 109811556 1 + G A STAD 109811554 + 109811534 109811574 41 TTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGG TTTGCTGGGGCCAAGCTGCCCCACTACGAGGCCCTGCGTGG < 41bp 1 0.0862036598867546 1 0.161139398813248 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811554 chr1:109811556 nonsynonymous SNV 0.994 1 23 hm5C_associated_SNPs_36707 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 55bp
chr1 109811556 109811556 1 + G A STAD 109811554 + 109811534 109811574 41 TTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGG TTTGCTGGGGCCAAGCTGCCCCACTACGAGGCCCTGCGTGG < 41bp 1 0.0862036598867546 1 0.161139398813248 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811554 chr1:109811556 nonsynonymous SNV 0.994 1 23 hm5C_associated_SNPs_36707 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 75bp
chr1 109811556 109811556 1 + G A STAD 109811555 + 109811535 109811575 41 TTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGGG TTGCTGGGGCCAAGCTGCCCCACTACGAGGCCCTGCGTGGG < 41bp 1 0.280315225387823 1 0.258492648601532 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811555 chr1:109811556 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_36708 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 55bp
chr1 109811556 109811556 1 + G A STAD 109811555 + 109811535 109811575 41 TTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGGG TTGCTGGGGCCAAGCTGCCCCACTACGAGGCCCTGCGTGGG < 41bp 1 0.280315225387823 1 0.258492648601532 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811555 chr1:109811556 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_36708 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 75bp
chr2 160050772 160050772 1 + G A STAD 160050773 + 160050753 160050793 41 GGCCTTGTCCAACAGGTGAGCCGTCTCCTGATTTTGGGAGG GGCCTTGTCCAACAGGTGAACCGTCTCCTGATTTTGGGAGG < 41bp 1 0.0483479807842481 1 0.21909436583519 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160050773 chr2:160050772 nonsynonymous SNV 0.998 4 20 hm5C_associated_SNPs_36709 0 0 1 0 1 TANC1 chr2:160050768 3'AG 160050768 Downstream 5bp
chr7 43580834 43580834 1 + G T STAD 43580837 + 43580817 43580857 41 GACGCTTTCTTCACGAGGCCCTTCTACAAGGCACTCCTGAG GACGCTTTCTTCACGAGTCCCTTCTACAAGGCACTCCTGAG < 41bp 1 0.0500258487707167 1 0.0841856002807617 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43580837 chr7:43580834 nonsynonymous SNV 0.996 4 18 hm5C_associated_SNPs_36710 0 0 0 0 2 HECW1 chr7:43580762 3'AG 43580762 Downstream 73bp
chr7 43580834 43580834 1 + G T STAD 43580837 + 43580817 43580857 41 GACGCTTTCTTCACGAGGCCCTTCTACAAGGCACTCCTGAG GACGCTTTCTTCACGAGTCCCTTCTACAAGGCACTCCTGAG < 41bp 1 0.0500258487707167 1 0.0841856002807617 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43580837 chr7:43580834 nonsynonymous SNV 0.996 4 18 hm5C_associated_SNPs_36710 0 0 0 0 2 HECW1 chr7:43580860 5'GT 43580860 Upstream 27bp
chr6 27806762 27806762 1 + C T STAD 27806746 + 27806726 27806766 41 AGACGGCCGTGCGCCTGCTGCTGCCAGGGGAGCTGGCCAAG AGACGGCCGTGCGCCTGCTGCTGCCAGGGGAGCTGGTCAAG < 41bp 1 0.596521217397306 1 0.329190909862518 experiment 0.806957565205388 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806746 chr6:27806762 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_36712 0 0 1 0 2 HIST1H2BN chr6:27806816 5'GT 27806816 Upstream 55bp
chr6 27806762 27806762 1 + C T STAD 27806746 + 27806726 27806766 41 AGACGGCCGTGCGCCTGCTGCTGCCAGGGGAGCTGGCCAAG AGACGGCCGTGCGCCTGCTGCTGCCAGGGGAGCTGGTCAAG < 41bp 1 0.596521217397306 1 0.329190909862518 experiment 0.806957565205388 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806746 chr6:27806762 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_36712 0 0 1 0 2 HIST1H2BN chr6:27806843 5'GT 27806843 Upstream 82bp
chr11 120317151 120317151 1 + G A STAD 120317136 + 120317116 120317156 41 GAGAAGACCTGAGCTCATTCCTGAGGATCTGCATCGCCACT GAGAAGACCTGAGCTCATTCCTGAGGATCTGCATCACCACT < 41bp 1 0.361172248592658 1 0.423886328935623 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120317136 chr11:120317151 nonsynonymous SNV 1.000 5 36 hm5C_associated_SNPs_36713 0 0 1 0 2 ARHGEF12 chr11:120317112 3'AG 120317112 Downstream 40bp
chr11 120317151 120317151 1 + G A STAD 120317136 + 120317116 120317156 41 GAGAAGACCTGAGCTCATTCCTGAGGATCTGCATCGCCACT GAGAAGACCTGAGCTCATTCCTGAGGATCTGCATCACCACT < 41bp 1 0.361172248592658 1 0.423886328935623 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120317136 chr11:120317151 nonsynonymous SNV 1.000 5 36 hm5C_associated_SNPs_36713 0 0 1 0 2 ARHGEF12 chr11:120317217 5'GT 120317217 Upstream 67bp
chr20 62703233 62703233 1 + G A STAD 62703231 + 62703211 62703251 41 CCCTGTTCACAGGTGCAGACCCGCAGCTCTGATGAGCCCAT CCCTGTTCACAGGTGCAGACCCACAGCTCTGATGAGCCCAT < 41bp 1 0.229931601980262 1 0.0482207834720612 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TCEA2 ENSG00000171703 CDS Human protein_coding chr20:62703231 chr20:62703233 nonsynonymous SNV 0.987 4 23 hm5C_associated_SNPs_36715 0 0 0 0 2 TCEA2 chr20:62703223 3'AG 62703223 Downstream 11bp
chr20 62703233 62703233 1 + G A STAD 62703231 + 62703211 62703251 41 CCCTGTTCACAGGTGCAGACCCGCAGCTCTGATGAGCCCAT CCCTGTTCACAGGTGCAGACCCACAGCTCTGATGAGCCCAT < 41bp 1 0.229931601980262 1 0.0482207834720612 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TCEA2 ENSG00000171703 CDS Human protein_coding chr20:62703231 chr20:62703233 nonsynonymous SNV 0.987 4 23 hm5C_associated_SNPs_36715 0 0 0 0 2 TCEA2 chr20:62703294 5'GT 62703294 Upstream 62bp
chr7 100275127 100275127 1 + G A STAD 100275144 + 100275124 100275164 41 CACGCCATCCCGCTGCGCTCCTCCTGGGTAATGACCTGTGC CACACCATCCCGCTGCGCTCCTCCTGGGTAATGACCTGTGC < 41bp 1 0.583411213376227 1 0.712117075920105 experiment 0.833177573247547 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GNB2 ENSG00000172354 CDS Human protein_coding chr7:100275144 chr7:100275127 nonsynonymous SNV 0.856 3 4 hm5C_associated_SNPs_36716 0 0 1 0 1 GNB2 chr7:100275121 3'AG 100275121 Downstream 7bp
chr14 52169261 52169261 1 + T A STAD 52169280 + 52169260 52169300 41 ATCCACTTCCGTGTGCAGTACTATGTGGAAAATGGCAGATT AACCACTTCCGTGTGCAGTACTATGTGGAAAATGGCAGATT < 41bp 1 0.200904759356209 1 0.140077352523804 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52169280 chr14:52169261 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_36717 0 0 0 0 1 FRMD6 chr14:52169306 5'GT 52169306 Upstream 46bp
chr20 33764049 33764049 1 + C A STAD 33764041 + 33764021 33764061 41 TCTAGAGCCCATGTCTTCTTCGAAGTGGCTGTGAATGGGAG TCTAGAGCCCATGTCTTCTTCGAAGTGGATGTGAATGGGAG < 41bp 1 0.704504277214866 1 0.755295753479004 experiment 0.590991445570269 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PROCR ENSG00000101000 CDS Human protein_coding chr20:33764041 chr20:33764049 nonsynonymous SNV 0.952 3 29 hm5C_associated_SNPs_36718 0 0 1 0 1 PROCR chr20:33763971 3'AG 33763971 Downstream 79bp
chr1 79128420 79128420 1 + C A STAD 79128401 + 79128381 79128421 41 TATTGCAGCTAGAGGAAGTCCAAAGAAAACTTGGATTTGCT TATTGCAGCTAGAGGAAGTCCAAAGAAAACTTGGATTTGAT < 41bp 1 0.372395949843265 1 0.403286129236221 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IFI44 ENSG00000137965 CDS Human protein_coding chr1:79128401 chr1:79128420 nonsynonymous SNV 0.199 1 40 hm5C_associated_SNPs_36719 0 0 0 0 1 IFI44 chr1:79128389 3'AG 79128389 Downstream 32bp
chr10 17276765 17276765 1 + A G STAD 17276757 + 17276737 17276777 41 CGCCAGGCAAAGCAGGAGTCCACTGAGTACCGGAGACAGGT CGCCAGGCAAAGCAGGAGTCCACTGAGTGCCGGAGACAGGT < 41bp 1 0.292400719605124 1 0.0801100730895996 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276757 chr10:17276765 nonsynonymous SNV 1.000 5 29 hm5C_associated_SNPs_36720 0 0 1 0 2 VIM chr10:17276692 3'AG 17276692 Downstream 74bp
chr10 17276765 17276765 1 + A G STAD 17276757 + 17276737 17276777 41 CGCCAGGCAAAGCAGGAGTCCACTGAGTACCGGAGACAGGT CGCCAGGCAAAGCAGGAGTCCACTGAGTGCCGGAGACAGGT < 41bp 1 0.292400719605124 1 0.0801100730895996 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276757 chr10:17276765 nonsynonymous SNV 1.000 5 29 hm5C_associated_SNPs_36720 0 0 1 0 2 VIM chr10:17276817 5'GT 17276817 Upstream 53bp
chr16 722950 722950 1 + C T STAD 722951 + 722931 722971 41 CATTACATGGACGGGCAGACCCCCTGCCTCTTTGTCTCCTC CATTACATGGACGGGCAGATCCCCTGCCTCTTTGTCTCCTC < 41bp 1 0.442403959531445 1 0.0970345139503479 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:722951 chr16:722950 nonsynonymous SNV 0.990 0 20 hm5C_associated_SNPs_36721 0 0 1 0 1 RHOT2 chr16:722928 3'AG 722928 Downstream 23bp
chr1 36028847 36028847 1 + C A STAD 36028846 + 36028826 36028866 41 ACCTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAG ACCTGACCGTTGAAGATGGGCACCGGGAGATCCTGATCAAG < 41bp 1 0.523371912052041 1 0.11153507232666 experiment 0.953256175895918 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028846 chr1:36028847 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_36722 0 0 1 0 1 NCDN chr1:36028803 3'AG 36028803 Downstream 45bp
chr1 36028847 36028847 1 + C A STAD 36028848 + 36028828 36028868 41 CTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAGGA CTGACCGTTGAAGATGGGCACCGGGAGATCCTGATCAAGGA < 41bp 1 0.452969873894851 1 0.433260321617126 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028848 chr1:36028847 nonsynonymous SNV 0.997 4 20 hm5C_associated_SNPs_36723 0 0 1 0 1 NCDN chr1:36028803 3'AG 36028803 Downstream 45bp
chr2 202141612 202141612 1 + T A STAD 202141594 + 202141574 202141614 41 AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAATCA AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAAACA < 41bp 1 0.239177451776463 1 0.207731187343597 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CASP8 ENSG00000064012 CDS Human protein_coding chr2:202141594 chr2:202141612 nonsynonymous SNV 0.362 4 39 hm5C_associated_SNPs_36725 0 0 1 0 1 CASP8 chr2:202141550 3'AG 202141550 Downstream 63bp
chr20 35176475 35176475 1 + C T STAD 35176493 + 35176473 35176513 41 AGCGAGGCCCCGGGGCCCATCAACTTCACCATGTTCCTCAC AGTGAGGCCCCGGGGCCCATCAACTTCACCATGTTCCTCAC < 41bp 1 0.603032223169527 1 0.867127954959869 experiment 0.793935553660946 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MYL9 ENSG00000101335 CDS Human protein_coding chr20:35176493 chr20:35176475 synonymous SNV . 0 3 hm5C_associated_SNPs_36726 0 0 0 0 1 MYL9 chr20:35176435 3'AG 35176435 Downstream 41bp
chr16 4700454 4700454 1 + T C STAD 4700472 + 4700452 4700492 41 GATCTGAACTTCCTGGGCAGCCGCCCGGTCCAGGTGGGTCT GACCTGAACTTCCTGGGCAGCCGCCCGGTCCAGGTGGGTCT < 41bp 1 0.0946833178794894 1 0.0814388394355774 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MGRN1 ENSG00000102858 CDS Human protein_coding chr16:4700472 chr16:4700454 synonymous SNV . 0 3 hm5C_associated_SNPs_36727 0 0 1 1 2 MGRN1 chr16:4700366 3'AG 4700366 Downstream 89bp
chr16 4700454 4700454 1 + T C STAD 4700472 + 4700452 4700492 41 GATCTGAACTTCCTGGGCAGCCGCCCGGTCCAGGTGGGTCT GACCTGAACTTCCTGGGCAGCCGCCCGGTCCAGGTGGGTCT < 41bp 1 0.0946833178794894 1 0.0814388394355774 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MGRN1 ENSG00000102858 CDS Human protein_coding chr16:4700472 chr16:4700454 synonymous SNV . 0 3 hm5C_associated_SNPs_36727 0 0 1 1 2 MGRN1 chr16:4700484 5'GT 4700484 Upstream 31bp
chr22 41322429 41322429 1 + A G STAD 41322444 + 41322424 41322464 41 CAGCCAGGCTTCTTGACCTTCACTGCGGCCCACATGCACCT CAGCCGGGCTTCTTGACCTTCACTGCGGCCCACATGCACCT < 41bp 1 0.340864604716423 1 0.428288191556931 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient XPNPEP3 ENSG00000196236 CDS Human protein_coding chr22:41322444 chr22:41322429 nonsynonymous SNV 0.005 0 6 hm5C_associated_SNPs_36728 0 0 1 0 1 XPNPEP3 chr22:41322467 5'GT 41322467 Upstream 39bp
chr15 41247781 41247781 1 + G A STAD 41247789 + 41247769 41247809 41 GCGCCTGAAGAGGCCATTGCCACGCAGATCCTGGCCTGCCG GCGCCTGAAGAGACCATTGCCACGCAGATCCTGGCCTGCCG < 41bp 1 0.729933370459798 1 0.446954250335693 experiment 0.540133259080404 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHAC1 ENSG00000128965 CDS Human protein_coding chr15:41247789 chr15:41247781 nonsynonymous SNV 0.221 1 13 hm5C_associated_SNPs_36729 0 0 1 0 1 CHAC1 chr15:41247748 3'AG 41247748 Downstream 34bp
chr2 207636937 207636937 1 + A T STAD 207636939 + 207636919 207636959 41 TGTCCTTTAAGAATAATGATCAACATATTGCAGTCCTGCAA TGTCCTTTAAGAATAATGTTCAACATATTGCAGTCCTGCAA < 41bp 1 0.630789960544124 1 0.234112858772278 experiment 0.738420078911752 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207636939 chr2:207636937 nonsynonymous SNV 0.944 0 19 hm5C_associated_SNPs_36731 0 0 1 0 1 FASTKD2 chr2:207636905 3'AG 207636905 Downstream 33bp
chr2 217366124 217366124 1 + G A STAD 217366129 + 217366109 217366149 41 GGAGTTGAAAGACCAGTAGACGCTCCTCTACTCTTTGAGAC GGAGTTGAAAGACCAATAGACGCTCCTCTACTCTTTGAGAC < 41bp 1 0.467355423025001 1 0.0951938629150391 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217366129 chr2:217366124 synonymous SNV . 0 16 hm5C_associated_SNPs_36732 0 0 1 1 1 RPL37A chr2:217366064 3'AG 217366064 Downstream 61bp
chr2 217366124 217366124 1 + G A STAD 217366131 + 217366111 217366151 41 AGTTGAAAGACCAGTAGACGCTCCTCTACTCTTTGAGACAT AGTTGAAAGACCAATAGACGCTCCTCTACTCTTTGAGACAT < 41bp 1 0.759551253417067 1 0.0619652271270752 experiment 0.480897493165866 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217366131 chr2:217366124 synonymous SNV . 0 14 hm5C_associated_SNPs_36733 0 0 1 1 1 RPL37A chr2:217366064 3'AG 217366064 Downstream 61bp
chr7 133164813 133164813 1 + G A STAD 133164812 + 133164792 133164832 41 GTTTCTCTGCAGGTTCGAATCGTCCTCCCATGCCATCAGTA GTTTCTCTGCAGGTTCGAATCATCCTCCCATGCCATCAGTA < 41bp 1 0.20849320550638 1 0.0720341205596924 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133164812 chr7:133164813 synonymous SNV . 0 22 hm5C_associated_SNPs_36734 0 0 1 0 2 EXOC4 chr7:133164804 3'AG 133164804 Downstream 10bp
chr7 133164813 133164813 1 + G A STAD 133164812 + 133164792 133164832 41 GTTTCTCTGCAGGTTCGAATCGTCCTCCCATGCCATCAGTA GTTTCTCTGCAGGTTCGAATCATCCTCCCATGCCATCAGTA < 41bp 1 0.20849320550638 1 0.0720341205596924 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133164812 chr7:133164813 synonymous SNV . 0 22 hm5C_associated_SNPs_36734 0 0 1 0 2 EXOC4 chr7:133164892 5'GT 133164892 Upstream 80bp
chr2 113315657 113315657 1 + A G STAD 113315643 + 113315623 113315663 41 ACCTTTTTGCTACTGGGAATCTGCGTTCTAAAACAGGTAAA ACCTTTTTGCTACTGGGAATCTGCGTTCTAAAACGGGTAAA < 41bp 1 0.581052289937657 1 0.738670468330383 experiment 0.837895420124685 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113315643 chr2:113315657 synonymous SNV . 0 35 hm5C_associated_SNPs_36735 0 0 1 0 1 POLR1B chr2:113315658 5'GT 113315658 Upstream 2bp
chr17 4685824 4685824 1 + G A STAD 4685815 + 4685795 4685835 41 CAGATGCTGCGCTCGGTCTTCTCCTCGGCGTTCGGGGTGCT CAGATGCTGCGCTCGGTCTTCTCCTCGGCATTCGGGGTGCT < 41bp 1 0.407355824803606 1 0.21045383810997 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TM4SF5 ENSG00000142484 CDS Human protein_coding chr17:4685815 chr17:4685824 synonymous SNV . 0 30 hm5C_associated_SNPs_36736 0 0 1 0 1 TM4SF5 chr17:4685798 3'AG 4685798 Downstream 27bp
chr7 23235487 23235487 1 + A G STAD 23235473 + 23235453 23235493 41 TTCAGGTTTTACAGACATTTCACCAGAGGAATTGAGGCTTG TTCAGGTTTTACAGACATTTCACCAGAGGAATTGGGGCTTG < 41bp 1 0.747052454600411 1 0.609747052192688 experiment 0.505895090799178 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23235473 chr7:23235487 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_36739 0 0 1 0 2 NUPL2 chr7:23235458 3'AG 23235458 Downstream 30bp
chr7 23235487 23235487 1 + A G STAD 23235473 + 23235453 23235493 41 TTCAGGTTTTACAGACATTTCACCAGAGGAATTGAGGCTTG TTCAGGTTTTACAGACATTTCACCAGAGGAATTGGGGCTTG < 41bp 1 0.747052454600411 1 0.609747052192688 experiment 0.505895090799178 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23235473 chr7:23235487 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_36739 0 0 1 0 2 NUPL2 chr7:23235534 5'GT 23235534 Upstream 48bp
chr19 11145661 11145661 1 + C T STAD 11145668 + 11145648 11145688 41 TCATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGAC TCATGGAGGAGGATGAGCTCCCCTCGTGGATCATCAAGGAC < 41bp 1 0.0827526336081315 1 0.112086802721024 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145668 chr19:11145661 synonymous SNV . 0 14 hm5C_associated_SNPs_36740 1 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 72bp
chr19 11145661 11145661 1 + C T STAD 11145669 + 11145649 11145689 41 CATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACG CATGGAGGAGGATGAGCTCCCCTCGTGGATCATCAAGGACG < 41bp 1 0.203049374546142 1 0.162261873483658 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145669 chr19:11145661 synonymous SNV . 0 13 hm5C_associated_SNPs_36741 1 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 72bp
chr19 11145661 11145661 1 + C T STAD 11145672 + 11145652 11145692 41 GGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACGACG GGAGGAGGATGAGCTCCCCTCGTGGATCATCAAGGACGACG < 41bp 1 0.587987184946768 1 0.696264922618866 experiment 0.824025630106465 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145672 chr19:11145661 synonymous SNV . 0 10 hm5C_associated_SNPs_36742 1 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 72bp
chr9 18504860 18504860 1 + G A STAD 18504862 + 18504842 18504882 41 CGCTCCGAGGAGGACCGGGACGGCCTATGGGATGCCTGGGG CGCTCCGAGGAGGACCGGAACGGCCTATGGGATGCCTGGGG < 41bp 1 0.40168912688798 1 0.493451625108719 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18504862 chr9:18504860 nonsynonymous SNV 0.938 2 19 hm5C_associated_SNPs_36743 0 0 0 0 1 ADAMTSL1 chr9:18504954 5'GT 18504954 Upstream 95bp
chr4 5733332 5733332 1 + A G STAD 5733343 + 5733323 5733363 41 AGGTTTCTCAGCCGCACCTTCCTCCGGGTGAACGCCTTCCC AGGTTTCTCGGCCGCACCTTCCTCCGGGTGAACGCCTTCCC < 41bp 1 0.0549165807766399 1 0.0833012461662292 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EVC ENSG00000072840 CDS Human protein_coding chr4:5733343 chr4:5733332 nonsynonymous SNV 0.002 0 10 hm5C_associated_SNPs_36746 0 0 1 0 1 EVC chr4:5733384 5'GT 5733384 Upstream 53bp
chr1 94012462 94012462 1 + T C STAD 94012454 + 94012434 94012474 41 AGAATCCACAAATGGGGGATCCAGGGAGTTTGCAGCCTAAA AGAATCCACAAATGGGGGATCCAGGGAGCTTGCAGCCTAAA < 41bp 1 0.318513693126084 1 0.630068600177765 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FNBP1L ENSG00000137942 CDS Human protein_coding chr1:94012454 chr1:94012462 synonymous SNV . 0 29 hm5C_associated_SNPs_36747 0 0 1 0 2 FNBP1L chr1:94012399 3'AG 94012399 Downstream 64bp
chr1 94012462 94012462 1 + T C STAD 94012454 + 94012434 94012474 41 AGAATCCACAAATGGGGGATCCAGGGAGTTTGCAGCCTAAA AGAATCCACAAATGGGGGATCCAGGGAGCTTGCAGCCTAAA < 41bp 1 0.318513693126084 1 0.630068600177765 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FNBP1L ENSG00000137942 CDS Human protein_coding chr1:94012454 chr1:94012462 synonymous SNV . 0 29 hm5C_associated_SNPs_36747 0 0 1 0 2 FNBP1L chr1:94012531 5'GT 94012531 Upstream 70bp
chr19 10200691 10200691 1 + G A STAD 10200684 + 10200664 10200704 41 CAGTTTGCCTGCTCCTCCTGCGACCACGTCTGGTGGCGCCG CAGTTTGCCTGCTCCTCCTGCGACCACATCTGGTGGCGCCG < 41bp 1 0.209226487168186 1 0.471001207828522 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10200684 chr19:10200691 nonsynonymous SNV 0.998 0 28 hm5C_associated_SNPs_36749 0 0 1 0 1 C19orf66 chr19:10200723 5'GT 10200723 Upstream 33bp
chr19 10200691 10200691 1 + G A STAD 10200688 + 10200668 10200708 41 TTGCCTGCTCCTCCTGCGACCACGTCTGGTGGCGCCGCGTG TTGCCTGCTCCTCCTGCGACCACATCTGGTGGCGCCGCGTG < 41bp 1 0.373718208671044 1 0.268994629383087 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10200688 chr19:10200691 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_36750 0 0 1 0 1 C19orf66 chr19:10200723 5'GT 10200723 Upstream 33bp
chr2 97875442 97875442 1 + T G STAD 97875436 + 97875416 97875456 41 AGTGTCTTCTCGGAAAAAACCAGCCTTGAAGGTAATGAAAC AGTGTCTTCTCGGAAAAAACCAGCCTGGAAGGTAATGAAAC < 41bp 1 0.260666898366529 1 0.386959731578827 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD36 ENSG00000135976 CDS Human protein_coding chr2:97875436 chr2:97875442 nonsynonymous SNV 0.008 1 27 hm5C_associated_SNPs_36751 0 0 0 0 1 ANKRD36 chr2:97875446 5'GT 97875446 Upstream 5bp
chr4 2943337 2943337 1 - G A STAD 2943341 - 2943321 2943361 41 AAGCCCTCCTCACGGATCACCTGGCGGACTGCAGCCACCCG AAGCCCTCCTCACGGATCACCTGGTGGACTGCAGCCACCCG < 41bp 1 0.658971660131499 1 0.507306277751923 experiment 0.682056679737002 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOP14 ENSG00000087269 CDS Human protein_coding chr4:2943341 chr4:2943337 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_36752 0 0 1 0 1 NOP14 chr4:2943309 5'GT 2943309 Upstream 29bp
chr22 39826100 39826100 1 + G A STAD 39826113 + 39826093 39826133 41 CTCTTCCGCTCCCGGCCCGCCCACTCGCTCCCGCCTGGCGA CTCTTCCACTCCCGGCCCGCCCACTCGCTCCCGCCTGGCGA < 41bp 1 0.0861321240192761 1 0.184441298246384 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TAB1 ENSG00000100324 CDS Human protein_coding chr22:39826113 chr22:39826100 nonsynonymous SNV 0.984 1 8 hm5C_associated_SNPs_36758 0 0 1 0 1 TAB1 chr22:39826020 3'AG 39826020 Downstream 81bp
chr1 198231732 198231732 1 + C T STAD 198231736 + 198231716 198231756 41 AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG AATGGATGCCAAAGCATGTGCTGATTGCATCAAAGAAATAG < 41bp 1 0.20943667974471 1 0.0947313904762268 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231736 chr1:198231732 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_36760 0 0 1 0 2 NEK7 chr1:198231705 3'AG 198231705 Downstream 28bp
chr1 198231732 198231732 1 + C T STAD 198231736 + 198231716 198231756 41 AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG AATGGATGCCAAAGCATGTGCTGATTGCATCAAAGAAATAG < 41bp 1 0.20943667974471 1 0.0947313904762268 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231736 chr1:198231732 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_36760 0 0 1 0 2 NEK7 chr1:198231767 5'GT 198231767 Upstream 36bp
chr1 198231732 198231732 1 + C T STAD 198231746 + 198231726 198231766 41 AAAGCACGTGCTGATTGCATCAAAGAAATAGATCTTCTTAA AAAGCATGTGCTGATTGCATCAAAGAAATAGATCTTCTTAA < 41bp 1 0.297207096149452 1 0.731647610664368 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231746 chr1:198231732 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_36761 0 0 1 0 2 NEK7 chr1:198231705 3'AG 198231705 Downstream 28bp
chr1 198231732 198231732 1 + C T STAD 198231746 + 198231726 198231766 41 AAAGCACGTGCTGATTGCATCAAAGAAATAGATCTTCTTAA AAAGCATGTGCTGATTGCATCAAAGAAATAGATCTTCTTAA < 41bp 1 0.297207096149452 1 0.731647610664368 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231746 chr1:198231732 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_36761 0 0 1 0 2 NEK7 chr1:198231767 5'GT 198231767 Upstream 36bp
chr6 43188290 43188290 1 + G A STAD 43188295 + 43188275 43188315 41 CCCGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC CCCGCCCAGCCCACCAGAGCCTTCATTCGTGCCATCGTCTC < 41bp 1 0.491238916296696 1 0.537998378276825 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188295 chr6:43188290 nonsynonymous SNV 0.949 2 16 hm5C_associated_SNPs_36764 0 0 0 0 2 CUL9 chr6:43188197 3'AG 43188197 Downstream 94bp
chr6 43188290 43188290 1 + G A STAD 43188295 + 43188275 43188315 41 CCCGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC CCCGCCCAGCCCACCAGAGCCTTCATTCGTGCCATCGTCTC < 41bp 1 0.491238916296696 1 0.537998378276825 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188295 chr6:43188290 nonsynonymous SNV 0.949 2 16 hm5C_associated_SNPs_36764 0 0 0 0 2 CUL9 chr6:43188337 5'GT 43188337 Upstream 48bp
chr17 46128574 46128574 1 + C T STAD 46128578 + 46128558 46128598 41 GGACGTGGATACTTACCTGACCTCACAGCTTCCCCCACTCC GGACGTGGATACTTACTTGACCTCACAGCTTCCCCCACTCC < 41bp 1 0.227390301498445 1 0.0230481028556824 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128578 chr17:46128574 synonymous SNV . 0 17 hm5C_associated_SNPs_36765 0 0 1 0 1 NFE2L1 chr17:46128479 3'AG 46128479 Downstream 96bp
chr17 46128574 46128574 1 + C T STAD 46128592 + 46128572 46128612 41 ACCTGACCTCACAGCTTCCCCCACTCCGGGAGATCATCCTG ACTTGACCTCACAGCTTCCCCCACTCCGGGAGATCATCCTG < 41bp 1 0.16948421263791 1 0.0754382610321045 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128592 chr17:46128574 synonymous SNV . 0 3 hm5C_associated_SNPs_36766 0 0 1 0 1 NFE2L1 chr17:46128479 3'AG 46128479 Downstream 96bp
chr11 95546138 95546138 1 + G C STAD 95546139 + 95546119 95546159 41 CTTCAAGATAAGATTCGACGCTTGGAACTTGAGAGGATTCA CTTCAAGATAAGATTCGACCCTTGGAACTTGAGAGGATTCA < 41bp 1 0.460909257792798 1 0.0597018599510193 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CEP57 ENSG00000166037 CDS Human protein_coding chr11:95546139 chr11:95546138 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_36768 0 0 1 0 3 CEP57 chr11:95546068 3'AG 95546068 Downstream 71bp
chr11 95546138 95546138 1 + G C STAD 95546139 + 95546119 95546159 41 CTTCAAGATAAGATTCGACGCTTGGAACTTGAGAGGATTCA CTTCAAGATAAGATTCGACCCTTGGAACTTGAGAGGATTCA < 41bp 1 0.460909257792798 1 0.0597018599510193 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CEP57 ENSG00000166037 CDS Human protein_coding chr11:95546139 chr11:95546138 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_36768 0 0 1 0 3 CEP57 chr11:95546096 3'AG 95546096 Downstream 43bp
chr11 95546138 95546138 1 + G C STAD 95546139 + 95546119 95546159 41 CTTCAAGATAAGATTCGACGCTTGGAACTTGAGAGGATTCA CTTCAAGATAAGATTCGACCCTTGGAACTTGAGAGGATTCA < 41bp 1 0.460909257792798 1 0.0597018599510193 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CEP57 ENSG00000166037 CDS Human protein_coding chr11:95546139 chr11:95546138 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_36768 0 0 1 0 3 CEP57 chr11:95546116 3'AG 95546116 Downstream 23bp
chr1 10394612 10394612 1 + G A STAD 10394600 + 10394580 10394620 41 CATTTGTTTACCTGAGCAATCTGCTGTATCCCGTGCCCCTG CATTTGTTTACCTGAGCAATCTGCTGTATCCCATGCCCCTG < 41bp 1 0.481191055550091 1 0.488134384155273 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10394600 chr1:10394612 nonsynonymous SNV 0.945 4 33 hm5C_associated_SNPs_36769 0 0 1 0 2 KIF1B chr1:10394578 3'AG 10394578 Downstream 35bp
chr1 10394612 10394612 1 + G A STAD 10394600 + 10394580 10394620 41 CATTTGTTTACCTGAGCAATCTGCTGTATCCCGTGCCCCTG CATTTGTTTACCTGAGCAATCTGCTGTATCCCATGCCCCTG < 41bp 1 0.481191055550091 1 0.488134384155273 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10394600 chr1:10394612 nonsynonymous SNV 0.945 4 33 hm5C_associated_SNPs_36769 0 0 1 0 2 KIF1B chr1:10394696 5'GT 10394696 Upstream 85bp
chr6 32123534 32123534 1 + C T STAD 32123537 + 32123517 32123557 41 TTCTTTCATCTCCCTCTCCTCTCCACAGATGGGACAGTATG TTCTTTCATCTCCCTCTTCTCTCCACAGATGGGACAGTATG < 41bp 1 0.732131802795224 1 0.941307544708252 experiment 0.535736394409552 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control PPT2 ENSG00000221988;ENSG00000258388 CDS Human other chr6:32123537 chr6:32123534 nonsynonymous SNV 0.998 5 18 hm5C_associated_SNPs_36770 0 0 1 0 2 PPT2 chr6:32123465 3'AG 32123465 Downstream 70bp
chr6 32123534 32123534 1 + C T STAD 32123537 + 32123517 32123557 41 TTCTTTCATCTCCCTCTCCTCTCCACAGATGGGACAGTATG TTCTTTCATCTCCCTCTTCTCTCCACAGATGGGACAGTATG < 41bp 1 0.732131802795224 1 0.941307544708252 experiment 0.535736394409552 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control PPT2 ENSG00000221988;ENSG00000258388 CDS Human other chr6:32123537 chr6:32123534 nonsynonymous SNV 0.998 5 18 hm5C_associated_SNPs_36770 0 0 1 0 2 PPT2 chr6:32123560 5'GT 32123560 Upstream 27bp
chr1 112305362 112305362 1 + T C STAD 112305377 + 112305357 112305397 41 TGGATTGGGAGACATACATGCATCGGATTGGGAGAGCTGGC TGGATCGGGAGACATACATGCATCGGATTGGGAGAGCTGGC < 41bp 1 0.42307615212803 1 0.151143282651901 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX20 ENSG00000064703 CDS Human protein_coding chr1:112305377 chr1:112305362 nonsynonymous SNV 0.998 1 6 hm5C_associated_SNPs_36772 0 0 1 0 2 DDX20 chr1:112305299 3'AG 112305299 Downstream 64bp
chr1 112305362 112305362 1 + T C STAD 112305377 + 112305357 112305397 41 TGGATTGGGAGACATACATGCATCGGATTGGGAGAGCTGGC TGGATCGGGAGACATACATGCATCGGATTGGGAGAGCTGGC < 41bp 1 0.42307615212803 1 0.151143282651901 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX20 ENSG00000064703 CDS Human protein_coding chr1:112305377 chr1:112305362 nonsynonymous SNV 0.998 1 6 hm5C_associated_SNPs_36772 0 0 1 0 2 DDX20 chr1:112305404 5'GT 112305404 Upstream 43bp
chr11 64054328 64054328 1 + C T STAD 64054320 + 64054300 64054340 41 CCCGTCTGCCTGCAGTTCTTCACCTTGACGCTTATGAACCT CCCGTCTGCCTGCAGTTCTTCACCTTGATGCTTATGAACCT < 41bp 1 0.317462684771939 1 0.140361398458481 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPR137 ENSG00000173264 CDS Human protein_coding chr11:64054320 chr11:64054328 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_36776 0 0 1 0 1 GPR137 chr11:64054353 5'GT 64054353 Upstream 26bp
chr4 54244047 54244047 1 + C T STAD 54244030 + 54244010 54244050 41 CGGCCGGCGAGGTCGAGCGCCTAGTGTCGGAGCTGAGCGGC CGGCCGGCGAGGTCGAGCGCCTAGTGTCGGAGCTGAGTGGC < 41bp 1 0.720351509144252 1 0.294541358947754 experiment 0.559296981711497 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FIP1L1 ENSG00000145216 CDS Human protein_coding chr4:54244030 chr4:54244047 synonymous SNV . 0 38 hm5C_associated_SNPs_36777 0 0 1 0 1 FIP1L1 chr4:54244090 5'GT 54244090 Upstream 44bp
chr4 54244047 54244047 1 + C T STAD 54244042 + 54244022 54244062 41 TCGAGCGCCTAGTGTCGGAGCTGAGCGGCGGGACCGGAGGG TCGAGCGCCTAGTGTCGGAGCTGAGTGGCGGGACCGGAGGG < 41bp 1 0.783956973527952 1 0.520363509654999 experiment 0.432086052944097 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FIP1L1 ENSG00000145216 CDS Human protein_coding chr4:54244042 chr4:54244047 synonymous SNV . 0 26 hm5C_associated_SNPs_36778 0 0 1 0 1 FIP1L1 chr4:54244090 5'GT 54244090 Upstream 44bp
chr1 16199371 16199371 1 + T C STAD 16199355 + 16199335 16199375 41 AATTCTTCCCAAGAGGGGATCTGAAGGAGGAGTGGCTGCCT AATTCTTCCCAAGAGGGGATCTGAAGGAGGAGTGGCCGCCT < 41bp 1 0.486868114424013 1 0.876042723655701 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16199355 chr1:16199371 synonymous SNV . 0 37 hm5C_associated_SNPs_36779 0 0 1 0 1 SPEN chr1:16199311 3'AG 16199311 Downstream 61bp
chr17 49247316 49247316 1 + G A STAD 49247300 + 49247280 49247320 41 CATTTTCACACTTTCGAGGTCTGGGAGGGGCTGAACGTGGT CATTTTCACACTTTCGAGGTCTGGGAGGGGCTGAACATGGT < 41bp 1 0.577458446211024 1 0.316820859909058 experiment 0.845083107577951 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49247300 chr17:49247316 nonsynonymous SNV 0.998 2 37 hm5C_associated_SNPs_36780 0 0 1 0 2 NME1-NME2;NME2 chr17:49247298 3'AG 49247298 Downstream 19bp
chr17 49247316 49247316 1 + G A STAD 49247300 + 49247280 49247320 41 CATTTTCACACTTTCGAGGTCTGGGAGGGGCTGAACGTGGT CATTTTCACACTTTCGAGGTCTGGGAGGGGCTGAACATGGT < 41bp 1 0.577458446211024 1 0.316820859909058 experiment 0.845083107577951 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49247300 chr17:49247316 nonsynonymous SNV 0.998 2 37 hm5C_associated_SNPs_36780 0 0 1 0 2 NME1-NME2;NME2 chr17:49247410 5'GT 49247410 Upstream 95bp
chr17 49247316 49247316 1 + G A STAD 49247310 + 49247290 49247330 41 CTTTCGAGGTCTGGGAGGGGCTGAACGTGGTGAAGACAGGC CTTTCGAGGTCTGGGAGGGGCTGAACATGGTGAAGACAGGC < 41bp 1 0.588865080870911 1 0.423196315765381 experiment 0.822269838258178 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49247310 chr17:49247316 nonsynonymous SNV 0.998 2 27 hm5C_associated_SNPs_36781 0 0 1 0 2 NME1-NME2;NME2 chr17:49247298 3'AG 49247298 Downstream 19bp
chr17 49247316 49247316 1 + G A STAD 49247310 + 49247290 49247330 41 CTTTCGAGGTCTGGGAGGGGCTGAACGTGGTGAAGACAGGC CTTTCGAGGTCTGGGAGGGGCTGAACATGGTGAAGACAGGC < 41bp 1 0.588865080870911 1 0.423196315765381 experiment 0.822269838258178 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49247310 chr17:49247316 nonsynonymous SNV 0.998 2 27 hm5C_associated_SNPs_36781 0 0 1 0 2 NME1-NME2;NME2 chr17:49247410 5'GT 49247410 Upstream 95bp
chr17 49247316 49247316 1 + G A STAD 49247315 + 49247295 49247335 41 GAGGTCTGGGAGGGGCTGAACGTGGTGAAGACAGGCCGAGT GAGGTCTGGGAGGGGCTGAACATGGTGAAGACAGGCCGAGT < 41bp 1 0.559159222676503 1 0.557732820510864 experiment 0.881681554646995 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49247315 chr17:49247316 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_36782 0 0 1 0 2 NME1-NME2;NME2 chr17:49247298 3'AG 49247298 Downstream 19bp
chr17 49247316 49247316 1 + G A STAD 49247315 + 49247295 49247335 41 GAGGTCTGGGAGGGGCTGAACGTGGTGAAGACAGGCCGAGT GAGGTCTGGGAGGGGCTGAACATGGTGAAGACAGGCCGAGT < 41bp 1 0.559159222676503 1 0.557732820510864 experiment 0.881681554646995 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49247315 chr17:49247316 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_36782 0 0 1 0 2 NME1-NME2;NME2 chr17:49247410 5'GT 49247410 Upstream 95bp
chr19 45162145 45162145 1 + G T STAD 45162132 + 45162112 45162152 41 TCTATTGGTCCAAATGTTCCCGTGAGGTCCTTTGGCACTGT TCTATTGGTCCAAATGTTCCCGTGAGGTCCTTTTGCACTGT < 41bp 1 0.660425588626399 1 0.309503257274628 experiment 0.679148822747202 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45162132 chr19:45162145 nonsynonymous SNV 0.015 1 34 hm5C_associated_SNPs_36783 0 0 1 0 1 PVR chr19:45162168 5'GT 45162168 Upstream 24bp
chr19 45162145 45162145 1 + G T STAD 45162140 + 45162120 45162160 41 TCCAAATGTTCCCGTGAGGTCCTTTGGCACTGTCATCTGTG TCCAAATGTTCCCGTGAGGTCCTTTTGCACTGTCATCTGTG < 41bp 1 0.0215548248218199 1 0.0331388711929321 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45162140 chr19:45162145 nonsynonymous SNV 0.015 1 26 hm5C_associated_SNPs_36784 0 0 1 0 1 PVR chr19:45162168 5'GT 45162168 Upstream 24bp
chr3 49212181 49212181 1 + G A STAD 49212179 + 49212159 49212199 41 CCAATTCCATTGACAGGGGGCCGCCAGGGCAAGCTCCCGGT CCAATTCCATTGACAGGGGGCCACCAGGGCAAGCTCCCGGT < 41bp 1 0.0420646880920306 1 0.174683809280396 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212179 chr3:49212181 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_36785 0 0 1 0 1 KLHDC8B chr3:49212175 3'AG 49212175 Downstream 7bp
chr3 49212181 49212181 1 + G A STAD 49212180 + 49212160 49212200 41 CAATTCCATTGACAGGGGGCCGCCAGGGCAAGCTCCCGGTG CAATTCCATTGACAGGGGGCCACCAGGGCAAGCTCCCGGTG < 41bp 1 0.603911325724489 1 0.184136390686035 experiment 0.792177348551022 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212180 chr3:49212181 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_36786 0 0 1 0 1 KLHDC8B chr3:49212175 3'AG 49212175 Downstream 7bp
chr19 58904820 58904820 1 + C T STAD 58904832 + 58904812 58904852 41 ACGACAGGCTGTGGATGTGTCCCCCCTGCGCCGTGTGAACC ACGACAGGTTGTGGATGTGTCCCCCCTGCGCCGTGTGAACC < 41bp 1 0.291500109309387 1 0.0568946301937103 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904832 chr19:58904820 nonsynonymous SNV 0.998 4 9 hm5C_associated_SNPs_36787 0 0 1 0 2 RPS5 chr19:58904726 3'AG 58904726 Downstream 95bp
chr19 58904820 58904820 1 + C T STAD 58904832 + 58904812 58904852 41 ACGACAGGCTGTGGATGTGTCCCCCCTGCGCCGTGTGAACC ACGACAGGTTGTGGATGTGTCCCCCCTGCGCCGTGTGAACC < 41bp 1 0.291500109309387 1 0.0568946301937103 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904832 chr19:58904820 nonsynonymous SNV 0.998 4 9 hm5C_associated_SNPs_36787 0 0 1 0 2 RPS5 chr19:58904854 5'GT 58904854 Upstream 35bp
chr19 58904820 58904820 1 + C T STAD 58904833 + 58904813 58904853 41 CGACAGGCTGTGGATGTGTCCCCCCTGCGCCGTGTGAACCA CGACAGGTTGTGGATGTGTCCCCCCTGCGCCGTGTGAACCA < 41bp 1 0.442956716312429 1 0.107477694749832 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904833 chr19:58904820 nonsynonymous SNV 0.998 4 8 hm5C_associated_SNPs_36788 0 0 1 0 2 RPS5 chr19:58904726 3'AG 58904726 Downstream 95bp
chr19 58904820 58904820 1 + C T STAD 58904833 + 58904813 58904853 41 CGACAGGCTGTGGATGTGTCCCCCCTGCGCCGTGTGAACCA CGACAGGTTGTGGATGTGTCCCCCCTGCGCCGTGTGAACCA < 41bp 1 0.442956716312429 1 0.107477694749832 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904833 chr19:58904820 nonsynonymous SNV 0.998 4 8 hm5C_associated_SNPs_36788 0 0 1 0 2 RPS5 chr19:58904854 5'GT 58904854 Upstream 35bp
chr19 58904820 58904820 1 + C T STAD 58904834 + 58904814 58904854 41 GACAGGCTGTGGATGTGTCCCCCCTGCGCCGTGTGAACCAG GACAGGTTGTGGATGTGTCCCCCCTGCGCCGTGTGAACCAG < 41bp 1 0.470802818623955 1 0.117296785116196 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904834 chr19:58904820 nonsynonymous SNV 0.998 4 7 hm5C_associated_SNPs_36789 0 0 1 0 2 RPS5 chr19:58904726 3'AG 58904726 Downstream 95bp
chr19 58904820 58904820 1 + C T STAD 58904834 + 58904814 58904854 41 GACAGGCTGTGGATGTGTCCCCCCTGCGCCGTGTGAACCAG GACAGGTTGTGGATGTGTCCCCCCTGCGCCGTGTGAACCAG < 41bp 1 0.470802818623955 1 0.117296785116196 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904834 chr19:58904820 nonsynonymous SNV 0.998 4 7 hm5C_associated_SNPs_36789 0 0 1 0 2 RPS5 chr19:58904854 5'GT 58904854 Upstream 35bp
chr19 58904820 58904820 1 + C T STAD 58904840 + 58904820 58904860 41 CTGTGGATGTGTCCCCCCTGCGCCGTGTGAACCAGGTGAGC TTGTGGATGTGTCCCCCCTGCGCCGTGTGAACCAGGTGAGC < 41bp 1 0.738811731590943 1 0.596035122871399 experiment 0.522376536818114 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904840 chr19:58904820 nonsynonymous SNV 0.998 4 1 hm5C_associated_SNPs_36790 0 0 1 0 2 RPS5 chr19:58904726 3'AG 58904726 Downstream 95bp
chr19 58904820 58904820 1 + C T STAD 58904840 + 58904820 58904860 41 CTGTGGATGTGTCCCCCCTGCGCCGTGTGAACCAGGTGAGC TTGTGGATGTGTCCCCCCTGCGCCGTGTGAACCAGGTGAGC < 41bp 1 0.738811731590943 1 0.596035122871399 experiment 0.522376536818114 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904840 chr19:58904820 nonsynonymous SNV 0.998 4 1 hm5C_associated_SNPs_36790 0 0 1 0 2 RPS5 chr19:58904854 5'GT 58904854 Upstream 35bp
chr2 24974860 24974860 1 + C T STAD 24974873 + 24974853 24974893 41 ATGGTTCCCCAAGGTGAGGCCAACTTTGCTCCATCTCTAAG ATGGTTCTCCAAGGTGAGGCCAACTTTGCTCCATCTCTAAG < 41bp 1 0.242858208002813 1 0.109321683645248 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24974873 chr2:24974860 nonsynonymous SNV 1.000 0 8 hm5C_associated_SNPs_36791 0 0 0 0 1 NCOA1 chr2:24974851 3'AG 24974851 Downstream 10bp
chr14 74424920 74424920 1 + C A STAD 74424923 + 74424903 74424943 41 CCATTTCCTATGGCCGACTCCAGCCCTTGGGTTCATATTAC CCATTTCCTATGGCCGAATCCAGCCCTTGGGTTCATATTAC < 41bp 1 0.497661153840606 1 0.150724023580551 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ6 ENSG00000119723 CDS Human protein_coding chr14:74424923 chr14:74424920 nonsynonymous SNV 0.998 1 18 hm5C_associated_SNPs_36792 0 0 1 0 2 COQ6 chr14:74424850 3'AG 74424850 Downstream 71bp
chr14 74424920 74424920 1 + C A STAD 74424923 + 74424903 74424943 41 CCATTTCCTATGGCCGACTCCAGCCCTTGGGTTCATATTAC CCATTTCCTATGGCCGAATCCAGCCCTTGGGTTCATATTAC < 41bp 1 0.497661153840606 1 0.150724023580551 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ6 ENSG00000119723 CDS Human protein_coding chr14:74424923 chr14:74424920 nonsynonymous SNV 0.998 1 18 hm5C_associated_SNPs_36792 0 0 1 0 2 COQ6 chr14:74424980 5'GT 74424980 Upstream 61bp
chr1 193205392 193205392 1 + C T STAD 193205390 + 193205370 193205410 41 ACTTTTCTACTTGTAGGGACCGCGTTGTAGCCGTTTTTGTG ACTTTTCTACTTGTAGGGACCGTGTTGTAGCCGTTTTTGTG < 41bp 1 0.403956203743908 1 0.10509404540062 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC73 ENSG00000134371 CDS Human protein_coding chr1:193205390 chr1:193205392 synonymous SNV . 0 23 hm5C_associated_SNPs_36793 0 0 1 0 2 CDC73 chr1:193205386 3'AG 193205386 Downstream 7bp
chr1 193205392 193205392 1 + C T STAD 193205390 + 193205370 193205410 41 ACTTTTCTACTTGTAGGGACCGCGTTGTAGCCGTTTTTGTG ACTTTTCTACTTGTAGGGACCGTGTTGTAGCCGTTTTTGTG < 41bp 1 0.403956203743908 1 0.10509404540062 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC73 ENSG00000134371 CDS Human protein_coding chr1:193205390 chr1:193205392 synonymous SNV . 0 23 hm5C_associated_SNPs_36793 0 0 1 0 2 CDC73 chr1:193205486 5'GT 193205486 Upstream 95bp
chr12 110474086 110474086 1 + G A STAD 110474069 + 110474049 110474089 41 ACATTTGTCTTTGCCAGGAACTTTCAGGACCAGCTTCGAAT ACATTTGTCTTTGCCAGGAACTTTCAGGACCAGCTTCAAAT < 41bp 1 0.0350469760446668 1 0.0505074858665466 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110474069 chr12:110474086 nonsynonymous SNV 0.988 0 38 hm5C_associated_SNPs_36795 0 0 1 0 2 ANKRD13A chr12:110474066 3'AG 110474066 Downstream 21bp
chr12 110474086 110474086 1 + G A STAD 110474069 + 110474049 110474089 41 ACATTTGTCTTTGCCAGGAACTTTCAGGACCAGCTTCGAAT ACATTTGTCTTTGCCAGGAACTTTCAGGACCAGCTTCAAAT < 41bp 1 0.0350469760446668 1 0.0505074858665466 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110474069 chr12:110474086 nonsynonymous SNV 0.988 0 38 hm5C_associated_SNPs_36795 0 0 1 0 2 ANKRD13A chr12:110474133 5'GT 110474133 Upstream 48bp
chr16 72048403 72048403 1 + A G STAD 72048390 + 72048370 72048410 41 AGGAAGTGAGAGTTCTGGGCCATAAATTCCGAAATCCAGTA AGGAAGTGAGAGTTCTGGGCCATAAATTCCGAAGTCCAGTA < 41bp 1 0.301102302880511 1 0.0599216222763062 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHODH ENSG00000102967 CDS Human protein_coding chr16:72048390 chr16:72048403 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_36796 0 0 1 1 1 DHODH chr16:72048372 3'AG 72048372 Downstream 32bp
chr11 64802601 64802601 1 + C T STAD 64802597 + 64802577 64802617 41 TCCTGCCACCCCCTCTGATCCCCACCCCGCCCCCTGATGAC TCCTGCCACCCCCTCTGATCCCCATCCCGCCCCCTGATGAC < 41bp 1 0.146160847249748 1 0.0379718244075775 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802597 chr11:64802601 nonsynonymous SNV 0.889 2 25 hm5C_associated_SNPs_36797 0 0 1 0 1 SNX15 chr11:64802678 5'GT 64802678 Upstream 78bp
chr11 64802601 64802601 1 + C T STAD 64802598 + 64802578 64802618 41 CCTGCCACCCCCTCTGATCCCCACCCCGCCCCCTGATGACC CCTGCCACCCCCTCTGATCCCCATCCCGCCCCCTGATGACC < 41bp 1 0.0372058046208349 1 0.0814820528030396 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802598 chr11:64802601 nonsynonymous SNV 0.889 2 24 hm5C_associated_SNPs_36798 0 0 1 0 1 SNX15 chr11:64802678 5'GT 64802678 Upstream 78bp
chr11 64802601 64802601 1 + C T STAD 64802599 + 64802579 64802619 41 CTGCCACCCCCTCTGATCCCCACCCCGCCCCCTGATGACCC CTGCCACCCCCTCTGATCCCCATCCCGCCCCCTGATGACCC < 41bp 1 0.0776866834783444 1 0.0891011953353882 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802599 chr11:64802601 nonsynonymous SNV 0.889 2 23 hm5C_associated_SNPs_36799 0 0 1 0 1 SNX15 chr11:64802678 5'GT 64802678 Upstream 78bp
chr11 64802601 64802601 1 + C T STAD 64802602 + 64802582 64802622 41 CCACCCCCTCTGATCCCCACCCCGCCCCCTGATGACCCCCG CCACCCCCTCTGATCCCCATCCCGCCCCCTGATGACCCCCG < 41bp 1 0.175615925437437 1 0.50740247964859 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802602 chr11:64802601 nonsynonymous SNV 0.889 2 20 hm5C_associated_SNPs_36800 0 0 1 0 1 SNX15 chr11:64802678 5'GT 64802678 Upstream 78bp
chr11 64802601 64802601 1 + C T STAD 64802603 + 64802583 64802623 41 CACCCCCTCTGATCCCCACCCCGCCCCCTGATGACCCCCGG CACCCCCTCTGATCCCCATCCCGCCCCCTGATGACCCCCGG < 41bp 1 0.155411117216497 1 0.769716262817383 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802603 chr11:64802601 nonsynonymous SNV 0.889 2 19 hm5C_associated_SNPs_36801 0 0 1 0 1 SNX15 chr11:64802678 5'GT 64802678 Upstream 78bp
chr11 64802601 64802601 1 + C T STAD 64802604 + 64802584 64802624 41 ACCCCCTCTGATCCCCACCCCGCCCCCTGATGACCCCCGGC ACCCCCTCTGATCCCCATCCCGCCCCCTGATGACCCCCGGC < 41bp 1 0.316883512279928 1 0.364389538764954 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802604 chr11:64802601 nonsynonymous SNV 0.889 2 18 hm5C_associated_SNPs_36802 0 0 1 0 1 SNX15 chr11:64802678 5'GT 64802678 Upstream 78bp
chr21 46900409 46900409 1 + T C STAD 46900416 + 46900396 46900436 41 GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTGCGGGT GAGGGATCTGGCTCCGGGGGCGATCTGGAGGCCCTGCGGGT < 41bp 1 0.0412321318565534 1 0.200352817773819 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900416 chr21:46900409 nonsynonymous SNV 0.010 3 14 hm5C_associated_SNPs_36803 0 0 1 0 2 COL18A1 chr21:46900381 3'AG 46900381 Downstream 29bp
chr21 46900409 46900409 1 + T C STAD 46900416 + 46900396 46900436 41 GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTGCGGGT GAGGGATCTGGCTCCGGGGGCGATCTGGAGGCCCTGCGGGT < 41bp 1 0.0412321318565534 1 0.200352817773819 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900416 chr21:46900409 nonsynonymous SNV 0.010 3 14 hm5C_associated_SNPs_36803 0 0 1 0 2 COL18A1 chr21:46900434 5'GT 46900434 Upstream 26bp
chr3 23959968 23959968 1 + C T STAD 23959975 + 23959955 23959995 41 TTCGCCGTGGTGGCCGAAAACGCCCAGTTCCTAAGGGTGCA TTCGCCGTGGTGGTCGAAAACGCCCAGTTCCTAAGGGTGCA < 41bp 1 0.721112120435242 1 0.134651631116867 experiment 0.557775759129515 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL15 ENSG00000174748 CDS Human protein_coding chr3:23959975 chr3:23959968 synonymous SNV . 0 14 hm5C_associated_SNPs_36804 0 0 0 0 3 RPL15 chr3:23959931 3'AG 23959931 Downstream 38bp
chr3 23959968 23959968 1 + C T STAD 23959975 + 23959955 23959995 41 TTCGCCGTGGTGGCCGAAAACGCCCAGTTCCTAAGGGTGCA TTCGCCGTGGTGGTCGAAAACGCCCAGTTCCTAAGGGTGCA < 41bp 1 0.721112120435242 1 0.134651631116867 experiment 0.557775759129515 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL15 ENSG00000174748 CDS Human protein_coding chr3:23959975 chr3:23959968 synonymous SNV . 0 14 hm5C_associated_SNPs_36804 0 0 0 0 3 RPL15 chr3:23960054 5'GT 23960054 Upstream 87bp
chr3 23959968 23959968 1 + C T STAD 23959975 + 23959955 23959995 41 TTCGCCGTGGTGGCCGAAAACGCCCAGTTCCTAAGGGTGCA TTCGCCGTGGTGGTCGAAAACGCCCAGTTCCTAAGGGTGCA < 41bp 1 0.721112120435242 1 0.134651631116867 experiment 0.557775759129515 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL15 ENSG00000174748 CDS Human protein_coding chr3:23959975 chr3:23959968 synonymous SNV . 0 14 hm5C_associated_SNPs_36804 0 0 0 0 3 RPL15 chr3:23960067 5'GT 23960067 Upstream 100bp
chr19 17313032 17313032 1 + A G STAD 17313031 + 17313011 17313051 41 GAGCGTGGCCAGAAGGACACCAACCTGGTCCTCAACCTCTT GAGCGTGGCCAGAAGGACACCGACCTGGTCCTCAACCTCTT < 41bp 1 0.18253510254087 1 0.147749423980713 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17313031 chr19:17313032 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_36805 0 0 1 0 2 MYO9B chr19:17312939 3'AG 17312939 Downstream 94bp
chr19 17313032 17313032 1 + A G STAD 17313031 + 17313011 17313051 41 GAGCGTGGCCAGAAGGACACCAACCTGGTCCTCAACCTCTT GAGCGTGGCCAGAAGGACACCGACCTGGTCCTCAACCTCTT < 41bp 1 0.18253510254087 1 0.147749423980713 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17313031 chr19:17313032 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_36805 0 0 1 0 2 MYO9B chr19:17313112 5'GT 17313112 Upstream 81bp
chr4 155665965 155665965 1 + C T STAD 155665967 + 155665947 155665987 41 CTGTGGAACAACTGCGAGCACTTCGTGACCTACTGCAGATA CTGTGGAACAACTGCGAGTACTTCGTGACCTACTGCAGATA < 41bp 1 0.404585106675165 1 0.0913062691688538 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRAT ENSG00000121207 CDS Human protein_coding chr4:155665967 chr4:155665965 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_36806 0 0 0 0 1 LRAT chr4:155666018 5'GT 155666018 Upstream 54bp
chr9 80942970 80942970 1 + T C STAD 80942983 + 80942963 80943003 41 TCAGTTGTCCAGTGGAGCCCCAAAATAGAAGCAAGATGAAT TCAGTTGCCCAGTGGAGCCCCAAAATAGAAGCAAGATGAAT < 41bp 1 0.378117213801163 1 0.318397402763367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80942983 chr9:80942970 synonymous SNV . 0 8 hm5C_associated_SNPs_36807 0 0 1 0 1 PSAT1 chr9:80942967 3'AG 80942967 Downstream 4bp
chr9 80858424 80858424 1 + G A STAD 80858436 + 80858416 80858456 41 GAGTCTTCGCTATAGGAGACCTGATCTTGACTGTATGGCTG GAGTCTTCACTATAGGAGACCTGATCTTGACTGTATGGCTG < 41bp 1 0.28616009869729 1 0.0687117278575897 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP78 ENSG00000148019 CDS Human protein_coding chr9:80858436 chr9:80858424 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_36810 0 0 1 0 1 CEP78 chr9:80858378 3'AG 80858378 Downstream 47bp
chr9 136217531 136217531 1 + G A STAD 136217530 + 136217510 136217550 41 AGGGAAAGGCAAGACTGGGACGTCTAGTCCACAGGAAGACC AGGGAAAGGCAAGACTGGGACATCTAGTCCACAGGAAGACC < 41bp 1 0.2043171759309 1 0.058914989233017 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136217530 chr9:136217531 nonsynonymous SNV 0.830 1 22 hm5C_associated_SNPs_36811 0 0 1 0 2 RPL7A chr9:136217452 3'AG 136217452 Downstream 80bp
chr9 136217531 136217531 1 + G A STAD 136217530 + 136217510 136217550 41 AGGGAAAGGCAAGACTGGGACGTCTAGTCCACAGGAAGACC AGGGAAAGGCAAGACTGGGACATCTAGTCCACAGGAAGACC < 41bp 1 0.2043171759309 1 0.058914989233017 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136217530 chr9:136217531 nonsynonymous SNV 0.830 1 22 hm5C_associated_SNPs_36811 0 0 1 0 2 RPL7A chr9:136217582 5'GT 136217582 Upstream 52bp
chr20 34832791 34832791 1 + C T STAD 34832788 + 34832768 34832808 41 TACCACCAGCTTGGTGAGATCCCCGCTGACTTCTTCGTAGA TACCACCAGCTTGGTGAGATCCCTGCTGACTTCTTCGTAGA < 41bp 1 0.221163367524725 1 0.196328461170197 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control AAR2 ENSG00000131043 CDS Human protein_coding chr20:34832788 chr20:34832791 synonymous SNV . 0 24 hm5C_associated_SNPs_36813 0 0 1 0 1 AAR2 chr20:34832848 5'GT 34832848 Upstream 58bp
chr19 1043781 1043781 1 + A G STAD 1043784 + 1043764 1043804 41 TCCGGGAGGTGTGGGAGATGCTGGGACCCCGGATCTTCACC TCCGGGAGGTGTGGGAGGTGCTGGGACCCCGGATCTTCACC < 41bp 1 0.682794986227311 1 0.801156759262085 experiment 0.634410027545377 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1043784 chr19:1043781 nonsynonymous SNV 0.056 1 18 hm5C_associated_SNPs_36818 0 0 1 0 2 ABCA7 chr19:1043724 3'AG 1043724 Downstream 58bp
chr19 1043781 1043781 1 + A G STAD 1043784 + 1043764 1043804 41 TCCGGGAGGTGTGGGAGATGCTGGGACCCCGGATCTTCACC TCCGGGAGGTGTGGGAGGTGCTGGGACCCCGGATCTTCACC < 41bp 1 0.682794986227311 1 0.801156759262085 experiment 0.634410027545377 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1043784 chr19:1043781 nonsynonymous SNV 0.056 1 18 hm5C_associated_SNPs_36818 0 0 1 0 2 ABCA7 chr19:1043840 5'GT 1043840 Upstream 60bp
chr22 29533623 29533623 1 + C T STAD 29533628 + 29533608 29533648 41 TATTTCTTCTCTGATCGCATCAATCAGGCCCAGGGATTTGC TATTTCTTCTCTGATTGCATCAATCAGGCCCAGGGATTTGC < 41bp 1 0.0328666881470819 1 0.0886226892471313 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KREMEN1 ENSG00000183762 CDS Human protein_coding chr22:29533628 chr22:29533623 nonsynonymous SNV 0.995 3 16 hm5C_associated_SNPs_36819 0 0 1 0 1 KREMEN1 chr22:29533662 5'GT 29533662 Upstream 40bp
chr7 127342555 127342555 1 + T C STAD 127342535 + 127342515 127342555 41 AGTGTGGTCAGGGCCCTGCTCCTCCCAGATTACTACCTGGT AGTGTGGTCAGGGCCCTGCTCCTCCCAGATTACTACCTGGC < 41bp 1 0.0514586289259078 1 0.181334525346756 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SND1 ENSG00000197157 CDS Human protein_coding chr7:127342535 chr7:127342555 nonsynonymous SNV 0.844 1 41 hm5C_associated_SNPs_36820 0 0 1 0 2 SND1 chr7:127342489 3'AG 127342489 Downstream 67bp
chr7 127342555 127342555 1 + T C STAD 127342535 + 127342515 127342555 41 AGTGTGGTCAGGGCCCTGCTCCTCCCAGATTACTACCTGGT AGTGTGGTCAGGGCCCTGCTCCTCCCAGATTACTACCTGGC < 41bp 1 0.0514586289259078 1 0.181334525346756 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SND1 ENSG00000197157 CDS Human protein_coding chr7:127342535 chr7:127342555 nonsynonymous SNV 0.844 1 41 hm5C_associated_SNPs_36820 0 0 1 0 2 SND1 chr7:127342580 5'GT 127342580 Upstream 26bp
chr10 17276790 17276790 1 + C A STAD 17276805 + 17276785 17276825 41 CTCACCTGTGAAGTGGATGCCCTTAAAGGAACCGTGAGTAC CTCACATGTGAAGTGGATGCCCTTAAAGGAACCGTGAGTAC < 41bp 1 0.156022105096373 1 0.0260064005851746 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276805 chr10:17276790 synonymous SNV . 0 6 hm5C_associated_SNPs_36821 0 0 1 0 2 VIM chr10:17276692 3'AG 17276692 Downstream 99bp
chr10 17276790 17276790 1 + C A STAD 17276805 + 17276785 17276825 41 CTCACCTGTGAAGTGGATGCCCTTAAAGGAACCGTGAGTAC CTCACATGTGAAGTGGATGCCCTTAAAGGAACCGTGAGTAC < 41bp 1 0.156022105096373 1 0.0260064005851746 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276805 chr10:17276790 synonymous SNV . 0 6 hm5C_associated_SNPs_36821 0 0 1 0 2 VIM chr10:17276817 5'GT 17276817 Upstream 28bp
chr1 109772108 109772108 1 + C T STAD 109772124 + 109772104 109772144 41 GGAGCGGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCC GGAGTGGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCC < 41bp 1 0.580368939799791 1 0.815507650375366 experiment 0.839262120400418 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SARS ENSG00000031698 CDS Human protein_coding chr1:109772124 chr1:109772108 nonsynonymous SNV 0.676 3 5 hm5C_associated_SNPs_36822 0 0 1 0 2 SARS chr1:109772036 3'AG 109772036 Downstream 73bp
chr1 109772108 109772108 1 + C T STAD 109772124 + 109772104 109772144 41 GGAGCGGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCC GGAGTGGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCC < 41bp 1 0.580368939799791 1 0.815507650375366 experiment 0.839262120400418 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SARS ENSG00000031698 CDS Human protein_coding chr1:109772124 chr1:109772108 nonsynonymous SNV 0.676 3 5 hm5C_associated_SNPs_36822 0 0 1 0 2 SARS chr1:109772194 5'GT 109772194 Upstream 87bp
chr8 36692338 36692338 1 + A T STAD 36692357 + 36692337 36692377 41 AATCCTTTGTGCAGTGATTCCCATGCTGAAGATATTTCCAA ATTCCTTTGTGCAGTGATTCCCATGCTGAAGATATTTCCAA < 41bp 1 0.16357547531444 1 0.176072329282761 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36692357 chr8:36692338 nonsynonymous SNV 0.904 2 2 hm5C_associated_SNPs_36823 0 0 0 0 2 KCNU1 chr8:36692304 3'AG 36692304 Downstream 35bp
chr8 36692338 36692338 1 + A T STAD 36692357 + 36692337 36692377 41 AATCCTTTGTGCAGTGATTCCCATGCTGAAGATATTTCCAA ATTCCTTTGTGCAGTGATTCCCATGCTGAAGATATTTCCAA < 41bp 1 0.16357547531444 1 0.176072329282761 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36692357 chr8:36692338 nonsynonymous SNV 0.904 2 2 hm5C_associated_SNPs_36823 0 0 0 0 2 KCNU1 chr8:36692386 5'GT 36692386 Upstream 49bp
chr12 112229169 112229169 1 + C T STAD 112229155 + 112229135 112229175 41 ACATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATT ACATTGTGCCTGGATTTGGCCCCACGGCTGGGGCTGCCATT < 41bp 1 0.129692913290302 1 0.0247390568256378 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229155 chr12:112229169 synonymous SNV . 0 35 hm5C_associated_SNPs_36824 0 0 1 0 2 ALDH2 chr12:112229110 3'AG 112229110 Downstream 60bp
chr12 112229169 112229169 1 + C T STAD 112229155 + 112229135 112229175 41 ACATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATT ACATTGTGCCTGGATTTGGCCCCACGGCTGGGGCTGCCATT < 41bp 1 0.129692913290302 1 0.0247390568256378 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human protein_coding chr12:112229155 chr12:112229169 synonymous SNV . 0 35 hm5C_associated_SNPs_36824 0 0 1 0 2 ALDH2 chr12:112229223 5'GT 112229223 Upstream 55bp
chr12 112229169 112229169 1 + C T STAD 112229156 + 112229136 112229176 41 CATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTG CATTGTGCCTGGATTTGGCCCCACGGCTGGGGCTGCCATTG < 41bp 1 0.291799333431436 1 0.134031236171722 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229156 chr12:112229169 synonymous SNV . 0 34 hm5C_associated_SNPs_36825 0 0 1 0 2 ALDH2 chr12:112229110 3'AG 112229110 Downstream 60bp
chr12 112229169 112229169 1 + C T STAD 112229156 + 112229136 112229176 41 CATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTG CATTGTGCCTGGATTTGGCCCCACGGCTGGGGCTGCCATTG < 41bp 1 0.291799333431436 1 0.134031236171722 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human protein_coding chr12:112229156 chr12:112229169 synonymous SNV . 0 34 hm5C_associated_SNPs_36825 0 0 1 0 2 ALDH2 chr12:112229223 5'GT 112229223 Upstream 55bp
chr12 112229169 112229169 1 + C T STAD 112229157 + 112229137 112229177 41 ATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTGC ATTGTGCCTGGATTTGGCCCCACGGCTGGGGCTGCCATTGC < 41bp 1 0.745662470389809 1 0.379211664199829 experiment 0.508675059220382 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229157 chr12:112229169 synonymous SNV . 0 33 hm5C_associated_SNPs_36826 0 0 1 0 2 ALDH2 chr12:112229110 3'AG 112229110 Downstream 60bp
chr12 112229169 112229169 1 + C T STAD 112229157 + 112229137 112229177 41 ATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTGC ATTGTGCCTGGATTTGGCCCCACGGCTGGGGCTGCCATTGC < 41bp 1 0.745662470389809 1 0.379211664199829 experiment 0.508675059220382 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human protein_coding chr12:112229157 chr12:112229169 synonymous SNV . 0 33 hm5C_associated_SNPs_36826 0 0 1 0 2 ALDH2 chr12:112229223 5'GT 112229223 Upstream 55bp
chr12 112229169 112229169 1 + C T STAD 112229168 + 112229148 112229188 41 ATTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGG ATTTGGCCCCACGGCTGGGGCTGCCATTGCCTCCCATGAGG < 41bp 1 0.388002625627335 1 0.0630034506320953 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229168 chr12:112229169 synonymous SNV . 0 22 hm5C_associated_SNPs_36827 0 0 1 0 2 ALDH2 chr12:112229110 3'AG 112229110 Downstream 60bp
chr12 112229169 112229169 1 + C T STAD 112229168 + 112229148 112229188 41 ATTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGG ATTTGGCCCCACGGCTGGGGCTGCCATTGCCTCCCATGAGG < 41bp 1 0.388002625627335 1 0.0630034506320953 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human protein_coding chr12:112229168 chr12:112229169 synonymous SNV . 0 22 hm5C_associated_SNPs_36827 0 0 1 0 2 ALDH2 chr12:112229223 5'GT 112229223 Upstream 55bp
chrX 70674047 70674047 1 + C T STAD 70674049 + 70674029 70674069 41 GTCAGTATACTAAGACTGCCCAGGAGATTGTGAACGTCTGT GTCAGTATACTAAGACTGTCCAGGAGATTGTGAACGTCTGT < 41bp 1 0.576809906321718 1 0.856076836585999 experiment 0.846380187356564 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF1 ENSG00000147133 CDS Human protein_coding chrX:70674049 chrX:70674047 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_36828 0 0 1 0 2 TAF1 chrX:70674020 3'AG 70674020 Downstream 28bp
chrX 70674047 70674047 1 + C T STAD 70674049 + 70674029 70674069 41 GTCAGTATACTAAGACTGCCCAGGAGATTGTGAACGTCTGT GTCAGTATACTAAGACTGTCCAGGAGATTGTGAACGTCTGT < 41bp 1 0.576809906321718 1 0.856076836585999 experiment 0.846380187356564 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF1 ENSG00000147133 CDS Human protein_coding chrX:70674049 chrX:70674047 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_36828 0 0 1 0 2 TAF1 chrX:70674087 5'GT 70674087 Upstream 41bp
chr9 134354732 134354732 1 + G A STAD 134354717 + 134354697 134354737 41 AGAACAACTTATGTCTGGAGCAAGGTGACGTGACCGTGCCT AGAACAACTTATGTCTGGAGCAAGGTGACGTGACCATGCCT < 41bp 1 0.310168946124896 1 0.805463552474976 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134354717 chr9:134354732 nonsynonymous SNV 0.192 0 36 hm5C_associated_SNPs_36829 0 0 1 0 1 PRRC2B chr9:134354639 3'AG 134354639 Downstream 94bp
chr9 134354732 134354732 1 + G A STAD 134354743 + 134354723 134354763 41 GACGTGACCGTGCCTGGCAGCAGCCTGGGCACTGAGATCTG GACGTGACCATGCCTGGCAGCAGCCTGGGCACTGAGATCTG < 41bp 1 0.232314845997431 1 0.317133665084839 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134354743 chr9:134354732 nonsynonymous SNV 0.192 0 10 hm5C_associated_SNPs_36830 0 0 1 0 1 PRRC2B chr9:134354639 3'AG 134354639 Downstream 94bp
chr12 69044223 69044223 1 + C A STAD 69044226 + 69044206 69044246 41 TGTAGAAAAATACGATCCTACGATAGAAGATTCTTATAGAA TGTAGAAAAATACGATCATACGATAGAAGATTCTTATAGAA < 41bp 1 0.561526781120687 1 0.371053576469421 experiment 0.876946437758625 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAP1B ENSG00000127314 CDS Human protein_coding chr12:69044226 chr12:69044223 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_36831 0 0 0 0 2 RAP1B chr12:69044180 3'AG 69044180 Downstream 44bp
chr12 69044223 69044223 1 + C A STAD 69044226 + 69044206 69044246 41 TGTAGAAAAATACGATCCTACGATAGAAGATTCTTATAGAA TGTAGAAAAATACGATCATACGATAGAAGATTCTTATAGAA < 41bp 1 0.561526781120687 1 0.371053576469421 experiment 0.876946437758625 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAP1B ENSG00000127314 CDS Human protein_coding chr12:69044226 chr12:69044223 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_36831 0 0 0 0 2 RAP1B chr12:69044248 5'GT 69044248 Upstream 26bp
chr11 36422780 36422780 1 + C T STAD 36422793 + 36422773 36422813 41 CCTTCCCCGATTCCAAGCAGCTCGGCAGGCTCTGCAGCTGA CCTTCCCTGATTCCAAGCAGCTCGGCAGGCTCTGCAGCTGA < 41bp 1 0.701136333611822 1 0.435936897993088 experiment 0.597727332776357 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRR5L ENSG00000135362 CDS Human protein_coding chr11:36422793 chr11:36422780 stopgain 0.822 1 8 hm5C_associated_SNPs_36832 0 0 0 0 1 PRR5L chr11:36422835 5'GT 36422835 Upstream 56bp
chr7 135291543 135291543 1 + A G STAD 135291549 + 135291529 135291569 41 TTCGTCATGAAACAAGAATCCACATCTTGAATCTTCTCATT TTCGTCATGAAACAGGAATCCACATCTTGAATCTTCTCATT < 41bp 1 0.216162007637552 1 0.0667721927165985 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135291549 chr7:135291543 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_36833 0 0 1 0 1 NUP205 chr7:135291499 3'AG 135291499 Downstream 45bp
chr9 139753497 139753497 1 + C T STAD 139753492 + 139753472 139753512 41 AGGTACTGCTGCACAGTGCTCAGGGCCAGCTGGCTGTGTGG AGGTACTGCTGCACAGTGCTCAGGGTCAGCTGGCTGTGTGG < 41bp 1 0.786184995942277 1 0.916534245014191 experiment 0.427630008115446 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139753492 chr9:139753497 synonymous SNV . 0 26 hm5C_associated_SNPs_36836 0 0 0 0 2 MAMDC4 chr9:139753457 3'AG 139753457 Downstream 41bp
chr9 139753497 139753497 1 + C T STAD 139753492 + 139753472 139753512 41 AGGTACTGCTGCACAGTGCTCAGGGCCAGCTGGCTGTGTGG AGGTACTGCTGCACAGTGCTCAGGGTCAGCTGGCTGTGTGG < 41bp 1 0.786184995942277 1 0.916534245014191 experiment 0.427630008115446 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139753492 chr9:139753497 synonymous SNV . 0 26 hm5C_associated_SNPs_36836 0 0 0 0 2 MAMDC4 chr9:139753584 5'GT 139753584 Upstream 88bp
chr12 22208520 22208520 1 + C T STAD 22208514 + 22208494 22208534 41 TCTCTGTTGTGAGACGCCATCAGTTTCGATGGAGTGAAATT TCTCTGTTGTGAGACGCCATCAGTTTTGATGGAGTGAAATT < 41bp 1 0.436453934841817 1 0.250121146440506 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208514 chr12:22208520 stopgain 1.000 1 27 hm5C_associated_SNPs_36840 0 0 0 0 1 CMAS chr12:22208544 5'GT 22208544 Upstream 25bp
chr19 39390817 39390817 1 + C G STAD 39390816 + 39390796 39390836 41 CCGGGGCTGTCGTGGGCTCCCCTCGTCTTCGGCTACGTCAC CCGGGGCTGTCGTGGGCTCCCGTCGTCTTCGGCTACGTCAC < 41bp 1 0.583598870735993 1 0.360470741987228 experiment 0.832802258528013 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39390816 chr19:39390817 nonsynonymous SNV 0.982 1 22 hm5C_associated_SNPs_36841 0 0 1 0 1 NFKBIB chr19:39390851 5'GT 39390851 Upstream 35bp
chr12 56214131 56214131 1 + G C STAD 56214120 + 56214100 56214140 41 CAGCCTCATTGCTAAGTGTACTGCTGCCGAAGTTGCCCCAG CAGCCTCATTGCTAAGTGTACTGCTGCCGAACTTGCCCCAG < 41bp 1 0.683597328524526 1 0.248014628887177 experiment 0.632805342950948 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ORMDL2 ENSG00000123353;ENSG00000257390 CDS Human protein_coding chr12:56214120 chr12:56214131 nonsynonymous SNV 0.990 2 32 hm5C_associated_SNPs_36842 0 0 1 0 1 ORMDL2 chr12:56214044 3'AG 56214044 Downstream 88bp
chr12 56214131 56214131 1 + G C STAD 56214123 + 56214103 56214143 41 CCTCATTGCTAAGTGTACTGCTGCCGAAGTTGCCCCAGTTC CCTCATTGCTAAGTGTACTGCTGCCGAACTTGCCCCAGTTC < 41bp 1 0.583282169435409 1 0.298034608364105 experiment 0.833435661129181 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ORMDL2 ENSG00000123353;ENSG00000257390 CDS Human protein_coding chr12:56214123 chr12:56214131 nonsynonymous SNV 0.990 2 29 hm5C_associated_SNPs_36843 0 0 1 0 1 ORMDL2 chr12:56214044 3'AG 56214044 Downstream 88bp
chr16 85691162 85691162 1 + G A STAD 85691160 + 85691140 85691180 41 GAGCAGCACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGA GAGCAGCACCTGGATATGGGCCAGCCCCCGGTGCCGGCGGA < 41bp 1 0.229843043806994 1 0.352977961301804 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691160 chr16:85691162 nonsynonymous SNV 0.943 4 23 hm5C_associated_SNPs_36846 0 0 1 0 1 GSE1 chr16:85691210 5'GT 85691210 Upstream 49bp
chr16 85691162 85691162 1 + G A STAD 85691161 + 85691141 85691181 41 AGCAGCACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGAG AGCAGCACCTGGATATGGGCCAGCCCCCGGTGCCGGCGGAG < 41bp 1 0.296699997280951 1 0.27364307641983 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691161 chr16:85691162 nonsynonymous SNV 0.943 4 22 hm5C_associated_SNPs_36847 0 0 1 0 1 GSE1 chr16:85691210 5'GT 85691210 Upstream 49bp
chr16 85691162 85691162 1 + G A STAD 85691167 + 85691147 85691187 41 ACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGAGGCAGAG ACCTGGATATGGGCCAGCCCCCGGTGCCGGCGGAGGCAGAG < 41bp 1 0.509466948000069 1 0.429136097431183 experiment 0.981066103999861 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691167 chr16:85691162 nonsynonymous SNV 0.943 4 16 hm5C_associated_SNPs_36848 0 0 1 0 1 GSE1 chr16:85691210 5'GT 85691210 Upstream 49bp
chr16 85691162 85691162 1 + G A STAD 85691173 + 85691153 85691193 41 ATATGGGCCGGCCCCCGGTGCCGGCGGAGGCAGAGCACAGG ATATGGGCCAGCCCCCGGTGCCGGCGGAGGCAGAGCACAGG < 41bp 1 0.21396097948308 1 0.531339347362518 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691173 chr16:85691162 nonsynonymous SNV 0.943 4 10 hm5C_associated_SNPs_36849 0 0 1 0 1 GSE1 chr16:85691210 5'GT 85691210 Upstream 49bp
chr11 128680436 128680436 1 + G T STAD 128680424 + 128680404 128680444 41 AGCGCCAACGCCAGCTGTATCACCTGGGAGGGGACCAACGG AGCGCCAACGCCAGCTGTATCACCTGGGAGGGTACCAACGG < 41bp 1 0.767184419860275 1 0.391922831535339 experiment 0.46563116027945 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FLI1 ENSG00000151702 CDS Human protein_coding chr11:128680424 chr11:128680436 synonymous SNV . 0 33 hm5C_associated_SNPs_36850 0 0 0 0 1 FLI1 chr11:128680354 3'AG 128680354 Downstream 83bp
chr3 49053239 49053239 1 - C A STAD 49053242 - 49053222 49053262 41 ACTACAACCGGGTACACATCCTGGGGGTGAGCACACAGCAA ACTACAACCGGGTACACATCCTGTGGGTGAGCACACAGCAA < 41bp 1 0.485316701438356 1 0.516333281993866 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control DALRD3 ENSG00000178149 CDS Human protein_coding chr3:49053242 chr3:49053239 nonsynonymous SNV 0.978 4 24 hm5C_associated_SNPs_36851 0 0 0 0 2 DALRD3 chr3:49053237 5'GT 49053237 Upstream 3bp
chr3 49053239 49053239 1 - C A STAD 49053242 - 49053222 49053262 41 ACTACAACCGGGTACACATCCTGGGGGTGAGCACACAGCAA ACTACAACCGGGTACACATCCTGTGGGTGAGCACACAGCAA < 41bp 1 0.485316701438356 1 0.516333281993866 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control DALRD3 ENSG00000178149 CDS Human protein_coding chr3:49053242 chr3:49053239 nonsynonymous SNV 0.978 4 24 hm5C_associated_SNPs_36851 0 0 0 0 2 DALRD3 chr3:49053305 3'AG 49053305 Downstream 67bp
chr3 49053239 49053239 1 - C A STAD 49053243 - 49053223 49053263 41 TACTACAACCGGGTACACATCCTGGGGGTGAGCACACAGCA TACTACAACCGGGTACACATCCTGTGGGTGAGCACACAGCA < 41bp 1 0.144985802147694 1 0.397264540195465 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control DALRD3 ENSG00000178149 CDS Human protein_coding chr3:49053243 chr3:49053239 nonsynonymous SNV 0.978 4 25 hm5C_associated_SNPs_36852 0 0 0 0 2 DALRD3 chr3:49053237 5'GT 49053237 Upstream 3bp
chr3 49053239 49053239 1 - C A STAD 49053243 - 49053223 49053263 41 TACTACAACCGGGTACACATCCTGGGGGTGAGCACACAGCA TACTACAACCGGGTACACATCCTGTGGGTGAGCACACAGCA < 41bp 1 0.144985802147694 1 0.397264540195465 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control DALRD3 ENSG00000178149 CDS Human protein_coding chr3:49053243 chr3:49053239 nonsynonymous SNV 0.978 4 25 hm5C_associated_SNPs_36852 0 0 0 0 2 DALRD3 chr3:49053305 3'AG 49053305 Downstream 67bp
chr3 49053239 49053239 1 - C A STAD 49053246 - 49053226 49053266 41 TCCTACTACAACCGGGTACACATCCTGGGGGTGAGCACACA TCCTACTACAACCGGGTACACATCCTGTGGGTGAGCACACA < 41bp 1 0.101931448128041 1 0.104578495025635 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control DALRD3 ENSG00000178149 CDS Human protein_coding chr3:49053246 chr3:49053239 nonsynonymous SNV 0.978 4 28 hm5C_associated_SNPs_36853 0 0 0 0 2 DALRD3 chr3:49053237 5'GT 49053237 Upstream 3bp
chr3 49053239 49053239 1 - C A STAD 49053246 - 49053226 49053266 41 TCCTACTACAACCGGGTACACATCCTGGGGGTGAGCACACA TCCTACTACAACCGGGTACACATCCTGTGGGTGAGCACACA < 41bp 1 0.101931448128041 1 0.104578495025635 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control DALRD3 ENSG00000178149 CDS Human protein_coding chr3:49053246 chr3:49053239 nonsynonymous SNV 0.978 4 28 hm5C_associated_SNPs_36853 0 0 0 0 2 DALRD3 chr3:49053305 3'AG 49053305 Downstream 67bp
chr3 49053239 49053239 1 - C A STAD 49053248 - 49053228 49053268 41 GCTCCTACTACAACCGGGTACACATCCTGGGGGTGAGCACA GCTCCTACTACAACCGGGTACACATCCTGTGGGTGAGCACA < 41bp 1 0.0947269032952517 1 0.102908790111542 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control DALRD3 ENSG00000178149 CDS Human protein_coding chr3:49053248 chr3:49053239 nonsynonymous SNV 0.978 4 30 hm5C_associated_SNPs_36854 0 0 0 0 2 DALRD3 chr3:49053237 5'GT 49053237 Upstream 3bp
chr3 49053239 49053239 1 - C A STAD 49053248 - 49053228 49053268 41 GCTCCTACTACAACCGGGTACACATCCTGGGGGTGAGCACA GCTCCTACTACAACCGGGTACACATCCTGTGGGTGAGCACA < 41bp 1 0.0947269032952517 1 0.102908790111542 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control DALRD3 ENSG00000178149 CDS Human protein_coding chr3:49053248 chr3:49053239 nonsynonymous SNV 0.978 4 30 hm5C_associated_SNPs_36854 0 0 0 0 2 DALRD3 chr3:49053305 3'AG 49053305 Downstream 67bp
chr20 23350271 23350271 1 + A G STAD 23350279 + 23350259 23350299 41 TTCACCCAGCTCAACGCCCTCCAGCGCCACCGCCGCATCCA TTCACCCAGCTCGACGCCCTCCAGCGCCACCGCCGCATCCA < 41bp 1 0.558667776240204 1 0.740210831165314 experiment 0.882664447519592 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350279 chr20:23350271 nonsynonymous SNV 0.991 2 13 hm5C_associated_SNPs_36856 0 0 0 0 1 GZF1 chr20:23350221 3'AG 23350221 Downstream 51bp
chr4 148827846 148827846 1 + G A STAD 148827838 + 148827818 148827858 41 TTTCCGAAGAGGAAAGGAAGCAGTGGTTGGAAGCTCTGGGT TTTCCGAAGAGGAAAGGAAGCAGTGGTTAGAAGCTCTGGGT < 41bp 1 0.712032903816389 1 0.862216293811798 experiment 0.575934192367222 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control ARHGAP10 ENSG00000071205 CDS Human protein_coding chr4:148827838 chr4:148827846 synonymous SNV . 0 29 hm5C_associated_SNPs_36858 0 0 0 0 2 ARHGAP10 chr4:148827789 3'AG 148827789 Downstream 58bp
chr4 148827846 148827846 1 + G A STAD 148827838 + 148827818 148827858 41 TTTCCGAAGAGGAAAGGAAGCAGTGGTTGGAAGCTCTGGGT TTTCCGAAGAGGAAAGGAAGCAGTGGTTAGAAGCTCTGGGT < 41bp 1 0.712032903816389 1 0.862216293811798 experiment 0.575934192367222 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control ARHGAP10 ENSG00000071205 CDS Human protein_coding chr4:148827838 chr4:148827846 synonymous SNV . 0 29 hm5C_associated_SNPs_36858 0 0 0 0 2 ARHGAP10 chr4:148827870 5'GT 148827870 Upstream 25bp
chr15 91492615 91492615 1 + T A STAD 91492607 + 91492587 91492627 41 GGCAGCGGGTGTGGTGTCGGCCATGGTGTGCATGGTGAAGA GGCAGCGGGTGTGGTGTCGGCCATGGTGAGCATGGTGAAGA < 41bp 1 0.27846471455777 1 0.407841920852661 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UNC45A ENSG00000140553 CDS Human protein_coding chr15:91492607 chr15:91492615 nonsynonymous SNV 0.925 3 29 hm5C_associated_SNPs_36859 0 0 1 0 2 UNC45A chr15:91492546 3'AG 91492546 Downstream 70bp
chr15 91492615 91492615 1 + T A STAD 91492607 + 91492587 91492627 41 GGCAGCGGGTGTGGTGTCGGCCATGGTGTGCATGGTGAAGA GGCAGCGGGTGTGGTGTCGGCCATGGTGAGCATGGTGAAGA < 41bp 1 0.27846471455777 1 0.407841920852661 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UNC45A ENSG00000140553 CDS Human protein_coding chr15:91492607 chr15:91492615 nonsynonymous SNV 0.925 3 29 hm5C_associated_SNPs_36859 0 0 1 0 2 UNC45A chr15:91492673 5'GT 91492673 Upstream 59bp
chr15 91492615 91492615 1 + T A STAD 91492608 + 91492588 91492628 41 GCAGCGGGTGTGGTGTCGGCCATGGTGTGCATGGTGAAGAC GCAGCGGGTGTGGTGTCGGCCATGGTGAGCATGGTGAAGAC < 41bp 1 0.686204969488046 1 0.368232280015945 experiment 0.627590061023907 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UNC45A ENSG00000140553 CDS Human protein_coding chr15:91492608 chr15:91492615 nonsynonymous SNV 0.925 3 28 hm5C_associated_SNPs_36860 0 0 1 0 2 UNC45A chr15:91492546 3'AG 91492546 Downstream 70bp
chr15 91492615 91492615 1 + T A STAD 91492608 + 91492588 91492628 41 GCAGCGGGTGTGGTGTCGGCCATGGTGTGCATGGTGAAGAC GCAGCGGGTGTGGTGTCGGCCATGGTGAGCATGGTGAAGAC < 41bp 1 0.686204969488046 1 0.368232280015945 experiment 0.627590061023907 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UNC45A ENSG00000140553 CDS Human protein_coding chr15:91492608 chr15:91492615 nonsynonymous SNV 0.925 3 28 hm5C_associated_SNPs_36860 0 0 1 0 2 UNC45A chr15:91492673 5'GT 91492673 Upstream 59bp
chr11 121495981 121495981 1 + G C STAD 121495977 + 121495957 121495997 41 CCATCCTGCTGTACGATGAGCTGGGGTCTGGTGAGTTGCGA CCATCCTGCTGTACGATGAGCTGGCGTCTGGTGAGTTGCGA < 41bp 1 0.232803917005116 1 0.410730004310608 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SORL1 ENSG00000137642 CDS Human protein_coding chr11:121495977 chr11:121495981 nonsynonymous SNV 0.836 1 25 hm5C_associated_SNPs_36869 0 0 1 0 1 SORL1 chr11:121495986 5'GT 121495986 Upstream 6bp
chr17 18631020 18631020 1 + G A STAD 18631040 + 18631020 18631060 41 GCAGGAGCTGGAGACGATGGCGGCCATCAGCAACACTGTCC ACAGGAGCTGGAGACGATGGCGGCCATCAGCAACACTGTCC < 41bp 1 0.716122847241374 1 0.227965950965881 experiment 0.567754305517253 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM16L ENSG00000108448 CDS Human protein_coding chr17:18631040 chr17:18631020 synonymous SNV . 0 1 hm5C_associated_SNPs_36870 0 0 0 0 1 TRIM16L chr17:18631071 5'GT 18631071 Upstream 52bp
chr10 17276730 17276730 1 + C T STAD 17276740 + 17276720 17276760 41 GGAACAATGACGCCCTGCGCCAGGCAAAGCAGGAGTCCACT GGAACAATGATGCCCTGCGCCAGGCAAAGCAGGAGTCCACT < 41bp 1 0.478053762394086 1 0.750745415687561 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276740 chr10:17276730 synonymous SNV . 0 11 hm5C_associated_SNPs_36871 0 0 1 0 2 VIM chr10:17276692 3'AG 17276692 Downstream 39bp
chr10 17276730 17276730 1 + C T STAD 17276740 + 17276720 17276760 41 GGAACAATGACGCCCTGCGCCAGGCAAAGCAGGAGTCCACT GGAACAATGATGCCCTGCGCCAGGCAAAGCAGGAGTCCACT < 41bp 1 0.478053762394086 1 0.750745415687561 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276740 chr10:17276730 synonymous SNV . 0 11 hm5C_associated_SNPs_36871 0 0 1 0 2 VIM chr10:17276817 5'GT 17276817 Upstream 88bp
chr5 14359545 14359545 1 + G A STAD 14359530 + 14359510 14359550 41 TCAACCACATTGAGACGGTGCTGCAGCAGCTGGACGAGGCG TCAACCACATTGAGACGGTGCTGCAGCAGCTGGACAAGGCG < 41bp 1 0.319552550140467 1 0.502311944961548 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359530 chr5:14359545 nonsynonymous SNV 0.999 3 36 hm5C_associated_SNPs_36872 0 0 1 0 2 TRIO chr5:14359466 3'AG 14359466 Downstream 80bp
chr5 14359545 14359545 1 + G A STAD 14359530 + 14359510 14359550 41 TCAACCACATTGAGACGGTGCTGCAGCAGCTGGACGAGGCG TCAACCACATTGAGACGGTGCTGCAGCAGCTGGACAAGGCG < 41bp 1 0.319552550140467 1 0.502311944961548 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359530 chr5:14359545 nonsynonymous SNV 0.999 3 36 hm5C_associated_SNPs_36872 0 0 1 0 2 TRIO chr5:14359640 5'GT 14359640 Upstream 96bp
chr5 14359545 14359545 1 + G A STAD 14359551 + 14359531 14359571 41 TGCAGCAGCTGGACGAGGCGCAGTCGCAGATGGAGGAGCTC TGCAGCAGCTGGACAAGGCGCAGTCGCAGATGGAGGAGCTC < 41bp 1 0.0580766545185817 1 0.15431135892868 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359551 chr5:14359545 nonsynonymous SNV 0.999 3 15 hm5C_associated_SNPs_36873 0 0 1 0 2 TRIO chr5:14359466 3'AG 14359466 Downstream 80bp
chr5 14359545 14359545 1 + G A STAD 14359551 + 14359531 14359571 41 TGCAGCAGCTGGACGAGGCGCAGTCGCAGATGGAGGAGCTC TGCAGCAGCTGGACAAGGCGCAGTCGCAGATGGAGGAGCTC < 41bp 1 0.0580766545185817 1 0.15431135892868 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359551 chr5:14359545 nonsynonymous SNV 0.999 3 15 hm5C_associated_SNPs_36873 0 0 1 0 2 TRIO chr5:14359640 5'GT 14359640 Upstream 96bp
chr5 14359545 14359545 1 + G A STAD 14359555 + 14359535 14359575 41 GCAGCTGGACGAGGCGCAGTCGCAGATGGAGGAGCTCTTCC GCAGCTGGACAAGGCGCAGTCGCAGATGGAGGAGCTCTTCC < 41bp 1 0.569890157944605 1 0.853487133979797 experiment 0.860219684110791 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359555 chr5:14359545 nonsynonymous SNV 0.999 3 11 hm5C_associated_SNPs_36874 0 0 1 0 2 TRIO chr5:14359466 3'AG 14359466 Downstream 80bp
chr5 14359545 14359545 1 + G A STAD 14359555 + 14359535 14359575 41 GCAGCTGGACGAGGCGCAGTCGCAGATGGAGGAGCTCTTCC GCAGCTGGACAAGGCGCAGTCGCAGATGGAGGAGCTCTTCC < 41bp 1 0.569890157944605 1 0.853487133979797 experiment 0.860219684110791 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359555 chr5:14359545 nonsynonymous SNV 0.999 3 11 hm5C_associated_SNPs_36874 0 0 1 0 2 TRIO chr5:14359640 5'GT 14359640 Upstream 96bp
chr6 31594956 31594956 1 + G T STAD 31594939 + 31594919 31594959 41 CTACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC CTACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGTCCC < 41bp 1 0.286898695387093 1 0.0903161466121674 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594939 chr6:31594956 nonsynonymous SNV 0.969 4 38 hm5C_associated_SNPs_36876 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 20bp
chr6 31594956 31594956 1 + G T STAD 31594940 + 31594920 31594960 41 TACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC TACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGTCCCC < 41bp 1 0.26321927472375 1 0.0894670188426971 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594940 chr6:31594956 nonsynonymous SNV 0.969 4 37 hm5C_associated_SNPs_36877 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 20bp
chr6 31594956 31594956 1 + G T STAD 31594941 + 31594921 31594961 41 ACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC ACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGTCCCCC < 41bp 1 0.31826323713161 1 0.134056210517883 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594941 chr6:31594956 nonsynonymous SNV 0.969 4 36 hm5C_associated_SNPs_36878 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 20bp
chr6 31594956 31594956 1 + G T STAD 31594942 + 31594922 31594962 41 CCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCC CCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGTCCCCCC < 41bp 1 0.584399526230048 1 0.625944316387177 experiment 0.831200947539904 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594942 chr6:31594956 nonsynonymous SNV 0.969 4 35 hm5C_associated_SNPs_36879 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 20bp
chr6 31594956 31594956 1 + G T STAD 31594957 + 31594937 31594977 41 GGCCCCGCCGGGAACTGGGGCCCCCCTGGGGACTACCCAGT GGCCCCGCCGGGAACTGGGTCCCCCCTGGGGACTACCCAGT < 41bp 1 0.251670105450499 1 0.0429392457008362 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594957 chr6:31594956 nonsynonymous SNV 0.969 4 20 hm5C_associated_SNPs_36880 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 20bp
chr6 31594956 31594956 1 + G T STAD 31594958 + 31594938 31594978 41 GCCCCGCCGGGAACTGGGGCCCCCCTGGGGACTACCCAGTG GCCCCGCCGGGAACTGGGTCCCCCCTGGGGACTACCCAGTG < 41bp 1 0.271217077260631 1 0.255046606063843 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594958 chr6:31594956 nonsynonymous SNV 0.969 4 19 hm5C_associated_SNPs_36881 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 20bp
chr6 31594956 31594956 1 + G T STAD 31594959 + 31594939 31594979 41 CCCCGCCGGGAACTGGGGCCCCCCTGGGGACTACCCAGTGA CCCCGCCGGGAACTGGGTCCCCCCTGGGGACTACCCAGTGA < 41bp 1 0.376823095317178 1 0.128459751605988 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594959 chr6:31594956 nonsynonymous SNV 0.969 4 18 hm5C_associated_SNPs_36882 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 20bp
chr6 31594956 31594956 1 + G T STAD 31594960 + 31594940 31594980 41 CCCGCCGGGAACTGGGGCCCCCCTGGGGACTACCCAGTGAG CCCGCCGGGAACTGGGTCCCCCCTGGGGACTACCCAGTGAG < 41bp 1 0.374590152979697 1 0.361474633216858 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594960 chr6:31594956 nonsynonymous SNV 0.969 4 17 hm5C_associated_SNPs_36883 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 20bp
chr12 104492124 104492124 1 + G A STAD 104492140 + 104492120 104492160 41 GAAAGAGACTCCTTCAAATCCAGTGGCCACAGTGAAAGCGG GAAAAAGACTCCTTCAAATCCAGTGGCCACAGTGAAAGCGG < 41bp 1 0.485070920255998 1 0.516948223114014 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104492140 chr12:104492124 nonsynonymous SNV 1.000 0 5 hm5C_associated_SNPs_36884 0 0 0 0 1 HCFC2 chr12:104492121 3'AG 104492121 Downstream 4bp
chr17 48562190 48562190 1 + C T STAD 48562204 + 48562184 48562224 41 TGGCAGCAGAGAACCCCCTCCCCTGTGCCAGGAGGATGACA TGGCAGTAGAGAACCCCCTCCCCTGTGCCAGGAGGATGACA < 41bp 1 0.12303162568083 1 0.267500996589661 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48562204 chr17:48562190 stopgain 0.841 0 7 hm5C_associated_SNPs_36885 0 0 0 0 1 RSAD1 chr17:48562105 3'AG 48562105 Downstream 86bp
chr17 48562190 48562190 1 + C T STAD 48562205 + 48562185 48562225 41 GGCAGCAGAGAACCCCCTCCCCTGTGCCAGGAGGATGACAA GGCAGTAGAGAACCCCCTCCCCTGTGCCAGGAGGATGACAA < 41bp 1 0.171144394633081 1 0.319778144359589 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48562205 chr17:48562190 stopgain 0.841 0 6 hm5C_associated_SNPs_36886 0 0 0 0 1 RSAD1 chr17:48562105 3'AG 48562105 Downstream 86bp
chr7 114302139 114302139 1 + T G STAD 114302124 + 114302104 114302144 41 CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCTTAGCC CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCGTAGCC < 41bp 1 0.238623804380077 1 0.32318526506424 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXP2 ENSG00000128573 CDS Human protein_coding chr7:114302124 chr7:114302139 nonsynonymous SNV 0.998 5 36 hm5C_associated_SNPs_36888 0 0 1 4 1 FOXP2 chr7:114302120 3'AG 114302120 Downstream 20bp
chr1 180012316 180012316 1 + T G STAD 180012302 + 180012282 180012322 41 TTCCAGACTTTGTGAAACAGCTGAGGACCAGAACTGAAACA TTCCAGACTTTGTGAAACAGCTGAGGACCAGAACGGAAACA < 41bp 1 0.441917634411367 1 0.137040197849274 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180012302 chr1:180012316 synonymous SNV . 0 35 hm5C_associated_SNPs_36889 0 0 1 0 1 CEP350 chr1:180012327 5'GT 180012327 Upstream 12bp
chr7 66489946 66489946 1 + C A STAD 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGGACCATCAGAGACTAAATTCCATT < 41bp 1 0.418273304551609 1 0.0851066410541534 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489946 nonsynonymous SNV 0.061 0 29 hm5C_associated_SNPs_36890 0 0 0 0 2 TYW1 chr7:66489887 3'AG 66489887 Downstream 60bp
chr7 66489946 66489946 1 + C A STAD 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGGACCATCAGAGACTAAATTCCATT < 41bp 1 0.418273304551609 1 0.0851066410541534 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489946 nonsynonymous SNV 0.061 0 29 hm5C_associated_SNPs_36890 0 0 0 0 2 TYW1 chr7:66490009 5'GT 66490009 Upstream 64bp
chr2 69379379 69379379 1 + C T STAD 69379375 + 69379355 69379395 41 CTGGCTCTCCTCTGGTGGTTCTGGCCCCTCTGCTGCACTGT CTGGCTCTCCTCTGGTGGTTCTGGTCCCTCTGCTGCACTGT < 41bp 1 0.512855861347567 1 0.648356080055237 experiment 0.974288277304867 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANTXR1 ENSG00000169604 CDS Human protein_coding chr2:69379375 chr2:69379379 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_36892 0 0 1 0 2 ANTXR1 chr2:69379301 3'AG 69379301 Downstream 79bp
chr2 69379379 69379379 1 + C T STAD 69379375 + 69379355 69379395 41 CTGGCTCTCCTCTGGTGGTTCTGGCCCCTCTGCTGCACTGT CTGGCTCTCCTCTGGTGGTTCTGGTCCCTCTGCTGCACTGT < 41bp 1 0.512855861347567 1 0.648356080055237 experiment 0.974288277304867 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANTXR1 ENSG00000169604 CDS Human protein_coding chr2:69379375 chr2:69379379 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_36892 0 0 1 0 2 ANTXR1 chr2:69379396 5'GT 69379396 Upstream 18bp
chrX 152958731 152958731 1 + C T STAD 152958738 + 152958718 152958758 41 GTGTGGATAGATGCGGGGACCCAGATTTTCTTTTCTTACGC GTGTGGATAGATGTGGGGACCCAGATTTTCTTTTCTTACGC < 41bp 1 0.587735613192765 1 0.263620376586914 experiment 0.824528773614469 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958738 chrX:152958731 nonsynonymous SNV 0.984 4 14 hm5C_associated_SNPs_36893 0 0 1 0 2 SLC6A8 chrX:152958718 3'AG 152958718 Downstream 14bp
chrX 152958731 152958731 1 + C T STAD 152958738 + 152958718 152958758 41 GTGTGGATAGATGCGGGGACCCAGATTTTCTTTTCTTACGC GTGTGGATAGATGTGGGGACCCAGATTTTCTTTTCTTACGC < 41bp 1 0.587735613192765 1 0.263620376586914 experiment 0.824528773614469 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958738 chrX:152958731 nonsynonymous SNV 0.984 4 14 hm5C_associated_SNPs_36893 0 0 1 0 2 SLC6A8 chrX:152958821 5'GT 152958821 Upstream 91bp
chr9 74817550 74817550 1 + A G STAD 74817563 + 74817543 74817583 41 TTGCTGGAAGTAGCATAGACCTGCCACTCTTGGAGTGGCTG TTGCTGGGAGTAGCATAGACCTGCCACTCTTGGAGTGGCTG < 41bp 1 0.294123422277343 1 0.078850120306015 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GDA ENSG00000119125 CDS Human protein_coding chr9:74817563 chr9:74817550 synonymous SNV . 0 8 hm5C_associated_SNPs_36894 0 0 0 0 1 GDA chr9:74817487 3'AG 74817487 Downstream 64bp
chr3 183435470 183435470 1 + T C STAD 183435490 + 183435470 183435510 41 TATTATCAAAGAACAGTTTGCTCTTGAAATGAAGAATAAGG CATTATCAAAGAACAGTTTGCTCTTGAAATGAAGAATAAGG < 41bp 1 0.0550548873454959 1 0.0755000412464142 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183435490 chr3:183435470 synonymous SNV . 0 1 hm5C_associated_SNPs_36895 0 0 1 0 2 YEATS2 chr3:183435439 3'AG 183435439 Downstream 32bp
chr3 183435470 183435470 1 + T C STAD 183435490 + 183435470 183435510 41 TATTATCAAAGAACAGTTTGCTCTTGAAATGAAGAATAAGG CATTATCAAAGAACAGTTTGCTCTTGAAATGAAGAATAAGG < 41bp 1 0.0550548873454959 1 0.0755000412464142 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183435490 chr3:183435470 synonymous SNV . 0 1 hm5C_associated_SNPs_36895 0 0 1 0 2 YEATS2 chr3:183435536 5'GT 183435536 Upstream 67bp
chr6 139487472 139487472 1 + T C STAD 139487463 + 139487443 139487483 41 GATCTGCAGCTTCGGTAGGCCGGTGGACCTGGAGAAGGACG GATCTGCAGCTTCGGTAGGCCGGTGGACCCGGAGAAGGACG < 41bp 1 0.607476083986527 1 0.579801857471466 experiment 0.785047832026947 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECA ENSG00000112406 CDS Human protein_coding chr6:139487463 chr6:139487472 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_36896 0 0 1 0 1 HECA chr6:139487421 3'AG 139487421 Downstream 52bp
chr12 7043403 7043403 1 + G A STAD 7043404 + 7043384 7043424 41 GAAGAACTGAGATCGAGGGGCCGGGCCTCCCCTGGAGGGGT GAAGAACTGAGATCGAGGGACCGGGCCTCCCCTGGAGGGGT < 41bp 1 0.311884117106932 1 0.571965873241425 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ATN1 ENSG00000111676 CDS Human protein_coding chr12:7043404 chr12:7043403 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_36897 0 0 1 0 2 ATN1 chr12:7043339 3'AG 7043339 Downstream 65bp
chr12 7043403 7043403 1 + G A STAD 7043404 + 7043384 7043424 41 GAAGAACTGAGATCGAGGGGCCGGGCCTCCCCTGGAGGGGT GAAGAACTGAGATCGAGGGACCGGGCCTCCCCTGGAGGGGT < 41bp 1 0.311884117106932 1 0.571965873241425 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ATN1 ENSG00000111676 CDS Human protein_coding chr12:7043404 chr12:7043403 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_36897 0 0 1 0 2 ATN1 chr12:7043476 5'GT 7043476 Upstream 74bp
chr1 215785250 215785250 1 + T C STAD 215785244 + 215785224 215785264 41 CCAACAAACTATTTGTAAGACTCTCATCGACTGGAAAAAGG CCAACAAACTATTTGTAAGACTCTCACCGACTGGAAAAAGG < 41bp 1 0.0946874041305421 1 0.0385651588439941 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215785244 chr1:215785250 nonsynonymous SNV 0.983 4 27 hm5C_associated_SNPs_36898 0 0 1 0 2 KCTD3 chr1:215785167 3'AG 215785167 Downstream 84bp
chr1 215785250 215785250 1 + T C STAD 215785244 + 215785224 215785264 41 CCAACAAACTATTTGTAAGACTCTCATCGACTGGAAAAAGG CCAACAAACTATTTGTAAGACTCTCACCGACTGGAAAAAGG < 41bp 1 0.0946874041305421 1 0.0385651588439941 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215785244 chr1:215785250 nonsynonymous SNV 0.983 4 27 hm5C_associated_SNPs_36898 0 0 1 0 2 KCTD3 chr1:215785263 5'GT 215785263 Upstream 14bp
chr12 6637435 6637435 1 + G A STAD 6637450 + 6637430 6637470 41 ACTGGGGATCTGGCCATCCGCTTTCCCAATCTGGTGGACCC ACTGGAGATCTGGCCATCCGCTTTCCCAATCTGGTGGACCC < 41bp 1 0.0951994807566923 1 0.0820887088775635 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6637450 chr12:6637435 synonymous SNV . 0 6 hm5C_associated_SNPs_36899 0 0 1 0 1 NCAPD2 chr12:6637339 3'AG 6637339 Downstream 97bp
chr19 5691598 5691598 1 + C T STAD 5691613 + 5691593 5691633 41 ACTGGCCGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGAG ACTGGTCGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGAG < 41bp 1 0.657235421292023 1 0.506915509700775 experiment 0.685529157415955 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RPL36 ENSG00000130255 CDS Human protein_coding chr19:5691613 chr19:5691598 nonsynonymous SNV 0.013 0 6 hm5C_associated_SNPs_36900 0 0 1 0 1 RPL36 chr19:5691543 3'AG 5691543 Downstream 56bp
chr7 73731916 73731916 1 + G A STAD 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGAGGAAGCA < 41bp 1 0.231090251207745 1 0.214419484138489 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731916 nonsynonymous SNV 0.994 1 34 hm5C_associated_SNPs_36901 0 0 0 0 1 CLIP2 chr7:73731997 5'GT 73731997 Upstream 82bp
chr7 73731916 73731916 1 + G A STAD 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGAGGAAGCAC < 41bp 1 0.40775841346367 1 0.333514004945755 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731916 nonsynonymous SNV 0.994 1 33 hm5C_associated_SNPs_36902 0 0 0 0 1 CLIP2 chr7:73731997 5'GT 73731997 Upstream 82bp
chr7 73731916 73731916 1 + G A STAD 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGAGGAAGCACT < 41bp 1 0.169031792888759 1 0.459985196590424 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731916 nonsynonymous SNV 0.994 1 32 hm5C_associated_SNPs_36903 0 0 0 0 1 CLIP2 chr7:73731997 5'GT 73731997 Upstream 82bp
chr7 73731916 73731916 1 + G A STAD 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGAGGAAGCACTC < 41bp 1 0.423875755385121 1 0.435987412929535 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731916 nonsynonymous SNV 0.994 1 31 hm5C_associated_SNPs_36904 0 0 0 0 1 CLIP2 chr7:73731997 5'GT 73731997 Upstream 82bp
chr12 121660770 121660770 1 + G A STAD 121660778 + 121660758 121660798 41 ACAGGCAGGTGCGTAGCTTTCAACGGGTCTGTCAAGACGTG ACAGGCAGGTGCATAGCTTTCAACGGGTCTGTCAAGACGTG < 41bp 1 0.767840458964726 1 0.384677797555923 experiment 0.464319082070548 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660778 chr12:121660770 nonsynonymous SNV 0.007 0 13 hm5C_associated_SNPs_36905 0 0 0 0 2 P2RX4 chr12:121660750 3'AG 121660750 Downstream 21bp
chr12 121660770 121660770 1 + G A STAD 121660778 + 121660758 121660798 41 ACAGGCAGGTGCGTAGCTTTCAACGGGTCTGTCAAGACGTG ACAGGCAGGTGCATAGCTTTCAACGGGTCTGTCAAGACGTG < 41bp 1 0.767840458964726 1 0.384677797555923 experiment 0.464319082070548 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660778 chr12:121660770 nonsynonymous SNV 0.007 0 13 hm5C_associated_SNPs_36905 0 0 0 0 2 P2RX4 chr12:121660846 5'GT 121660846 Upstream 77bp
chr17 39974715 39974715 1 + G A STAD 39974698 + 39974678 39974718 41 GGCTGATCAAGGGCATGGACCAGGGGCTGCTGGGCATGTGT GGCTGATCAAGGGCATGGACCAGGGGCTGCTGGGCATATGT < 41bp 1 0.691467264591835 1 0.928051352500916 experiment 0.61706547081633 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974698 chr17:39974715 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_36906 0 0 1 0 2 FKBP10 chr17:39974634 3'AG 39974634 Downstream 82bp
chr17 39974715 39974715 1 + G A STAD 39974698 + 39974678 39974718 41 GGCTGATCAAGGGCATGGACCAGGGGCTGCTGGGCATGTGT GGCTGATCAAGGGCATGGACCAGGGGCTGCTGGGCATATGT < 41bp 1 0.691467264591835 1 0.928051352500916 experiment 0.61706547081633 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974698 chr17:39974715 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_36906 0 0 1 0 2 FKBP10 chr17:39974779 5'GT 39974779 Upstream 65bp
chr17 39974715 39974715 1 + G A STAD 39974704 + 39974684 39974724 41 TCAAGGGCATGGACCAGGGGCTGCTGGGCATGTGTCCTGGA TCAAGGGCATGGACCAGGGGCTGCTGGGCATATGTCCTGGA < 41bp 1 0.28335160049538 1 0.0389918386936188 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974704 chr17:39974715 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_36907 0 0 1 0 2 FKBP10 chr17:39974634 3'AG 39974634 Downstream 82bp
chr17 39974715 39974715 1 + G A STAD 39974704 + 39974684 39974724 41 TCAAGGGCATGGACCAGGGGCTGCTGGGCATGTGTCCTGGA TCAAGGGCATGGACCAGGGGCTGCTGGGCATATGTCCTGGA < 41bp 1 0.28335160049538 1 0.0389918386936188 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974704 chr17:39974715 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_36907 0 0 1 0 2 FKBP10 chr17:39974779 5'GT 39974779 Upstream 65bp
chr17 39974715 39974715 1 + G A STAD 39974712 + 39974692 39974732 41 ATGGACCAGGGGCTGCTGGGCATGTGTCCTGGAGAGAGAAG ATGGACCAGGGGCTGCTGGGCATATGTCCTGGAGAGAGAAG < 41bp 1 0.103089754419769 1 0.319764792919159 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974712 chr17:39974715 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_36908 0 0 1 0 2 FKBP10 chr17:39974634 3'AG 39974634 Downstream 82bp
chr17 39974715 39974715 1 + G A STAD 39974712 + 39974692 39974732 41 ATGGACCAGGGGCTGCTGGGCATGTGTCCTGGAGAGAGAAG ATGGACCAGGGGCTGCTGGGCATATGTCCTGGAGAGAGAAG < 41bp 1 0.103089754419769 1 0.319764792919159 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974712 chr17:39974715 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_36908 0 0 1 0 2 FKBP10 chr17:39974779 5'GT 39974779 Upstream 65bp
chr1 26135604 26135604 1 + A G STAD 26135615 + 26135595 26135635 41 GCCTGCCTGACTGCCATCAGCGACTTCTACTACACTGTGAT GCCTGCCTGGCTGCCATCAGCGACTTCTACTACACTGTGAT < 41bp 1 0.29019246976883 1 0.237112581729889 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26135615 chr1:26135604 nonsynonymous SNV 0.897 2 10 hm5C_associated_SNPs_36909 0 0 1 0 2 SELENON chr1:26135517 3'AG 26135517 Downstream 88bp
chr1 26135604 26135604 1 + A G STAD 26135615 + 26135595 26135635 41 GCCTGCCTGACTGCCATCAGCGACTTCTACTACACTGTGAT GCCTGCCTGGCTGCCATCAGCGACTTCTACTACACTGTGAT < 41bp 1 0.29019246976883 1 0.237112581729889 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26135615 chr1:26135604 nonsynonymous SNV 0.897 2 10 hm5C_associated_SNPs_36909 0 0 1 0 2 SELENON chr1:26135641 5'GT 26135641 Upstream 38bp
chr11 988613 988613 1 + G A STAD 988594 + 988574 988614 41 GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGCGACCGC GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGCGACCAC < 41bp 1 0.732077129985069 1 0.517643213272095 experiment 0.535845740029863 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:988594 chr11:988613 nonsynonymous SNV 0.995 1 40 hm5C_associated_SNPs_36910 0 0 1 0 2 AP2A2 chr11:988552 3'AG 988552 Downstream 62bp
chr11 988613 988613 1 + G A STAD 988594 + 988574 988614 41 GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGCGACCGC GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGCGACCAC < 41bp 1 0.732077129985069 1 0.517643213272095 experiment 0.535845740029863 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:988594 chr11:988613 nonsynonymous SNV 0.995 1 40 hm5C_associated_SNPs_36910 0 0 1 0 2 AP2A2 chr11:988689 5'GT 988689 Upstream 77bp
chr19 58906110 58906110 1 + A G STAD 58906094 + 58906074 58906114 41 AGAAGAAGGACGAGCTGGAGCGTGTGGCCAAGTCCAACCGC AGAAGAAGGACGAGCTGGAGCGTGTGGCCAAGTCCAGCCGC < 41bp 1 0.706989608447854 1 0.419643133878708 experiment 0.586020783104292 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906094 chr19:58906110 nonsynonymous SNV 0.994 4 37 hm5C_associated_SNPs_36913 0 0 1 0 1 RPS5 chr19:58906049 3'AG 58906049 Downstream 62bp
chr19 58906110 58906110 1 + A G STAD 58906102 + 58906082 58906122 41 GACGAGCTGGAGCGTGTGGCCAAGTCCAACCGCTGATTTTC GACGAGCTGGAGCGTGTGGCCAAGTCCAGCCGCTGATTTTC < 41bp 1 0.642355038622187 1 0.415343701839447 experiment 0.715289922755627 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906102 chr19:58906110 nonsynonymous SNV 0.994 4 29 hm5C_associated_SNPs_36914 0 0 1 0 1 RPS5 chr19:58906049 3'AG 58906049 Downstream 62bp
chr19 58906110 58906110 1 + A G STAD 58906107 + 58906087 58906127 41 GCTGGAGCGTGTGGCCAAGTCCAACCGCTGATTTTCCCAGC GCTGGAGCGTGTGGCCAAGTCCAGCCGCTGATTTTCCCAGC < 41bp 1 0.57210201491081 1 0.521935045719147 experiment 0.85579597017838 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906107 chr19:58906110 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_36915 0 0 1 0 1 RPS5 chr19:58906049 3'AG 58906049 Downstream 62bp
chr19 58906110 58906110 1 + A G STAD 58906108 + 58906088 58906128 41 CTGGAGCGTGTGGCCAAGTCCAACCGCTGATTTTCCCAGCT CTGGAGCGTGTGGCCAAGTCCAGCCGCTGATTTTCCCAGCT < 41bp 1 0.544949986332979 1 0.278288215398788 experiment 0.910100027334042 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906108 chr19:58906110 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_36916 0 0 1 0 1 RPS5 chr19:58906049 3'AG 58906049 Downstream 62bp
chr17 18143909 18143909 1 + A G STAD 18143895 + 18143875 18143915 41 GCGCTTGTTTTCTGCAGGGGCCCACCACGGGCCCACCATGT GCGCTTGTTTTCTGCAGGGGCCCACCACGGGCCCGCCATGT < 41bp 1 0.0413192813434238 1 0.123263984918594 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18143895 chr17:18143909 nonsynonymous SNV 0.953 4 35 hm5C_associated_SNPs_36917 0 0 1 0 1 LLGL1 chr17:18143892 3'AG 18143892 Downstream 18bp
chr17 18143909 18143909 1 + A G STAD 18143896 + 18143876 18143916 41 CGCTTGTTTTCTGCAGGGGCCCACCACGGGCCCACCATGTG CGCTTGTTTTCTGCAGGGGCCCACCACGGGCCCGCCATGTG < 41bp 1 0.0527621369963035 1 0.0463764667510986 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18143896 chr17:18143909 nonsynonymous SNV 0.953 4 34 hm5C_associated_SNPs_36918 0 0 1 0 1 LLGL1 chr17:18143892 3'AG 18143892 Downstream 18bp
chr17 18143909 18143909 1 + A G STAD 18143897 + 18143877 18143917 41 GCTTGTTTTCTGCAGGGGCCCACCACGGGCCCACCATGTGG GCTTGTTTTCTGCAGGGGCCCACCACGGGCCCGCCATGTGG < 41bp 1 0.742835854699394 1 0.405979245901108 experiment 0.514328290601213 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18143897 chr17:18143909 nonsynonymous SNV 0.953 4 33 hm5C_associated_SNPs_36919 0 0 1 0 1 LLGL1 chr17:18143892 3'AG 18143892 Downstream 18bp
chr17 18143909 18143909 1 + A G STAD 18143906 + 18143886 18143926 41 CTGCAGGGGCCCACCACGGGCCCACCATGTGGGCTGGCACC CTGCAGGGGCCCACCACGGGCCCGCCATGTGGGCTGGCACC < 41bp 1 0.0992991851231298 1 0.0819941163063049 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18143906 chr17:18143909 nonsynonymous SNV 0.953 4 24 hm5C_associated_SNPs_36920 0 0 1 0 1 LLGL1 chr17:18143892 3'AG 18143892 Downstream 18bp
chr17 18143909 18143909 1 + A G STAD 18143907 + 18143887 18143927 41 TGCAGGGGCCCACCACGGGCCCACCATGTGGGCTGGCACCA TGCAGGGGCCCACCACGGGCCCGCCATGTGGGCTGGCACCA < 41bp 1 0.120156222530993 1 0.119686812162399 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18143907 chr17:18143909 nonsynonymous SNV 0.953 4 23 hm5C_associated_SNPs_36921 0 0 1 0 1 LLGL1 chr17:18143892 3'AG 18143892 Downstream 18bp
chr1 879321 879321 1 + G A STAD 879305 + 879285 879325 41 CAGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGGCCAG CAGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGACCAG < 41bp 1 0.517986811247189 1 0.0668306350708008 experiment 0.964026377505621 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879305 chr1:879321 nonsynonymous SNV 1.000 0 37 hm5C_associated_SNPs_36922 0 0 0 0 2 SAMD11 chr1:879273 3'AG 879273 Downstream 49bp
chr1 879321 879321 1 + G A STAD 879305 + 879285 879325 41 CAGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGGCCAG CAGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGACCAG < 41bp 1 0.517986811247189 1 0.0668306350708008 experiment 0.964026377505621 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879305 chr1:879321 nonsynonymous SNV 1.000 0 37 hm5C_associated_SNPs_36922 0 0 0 0 2 SAMD11 chr1:879288 3'AG 879288 Downstream 34bp
chr1 879321 879321 1 + G A STAD 879306 + 879286 879326 41 AGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGGCCAGC AGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGACCAGC < 41bp 1 0.673963930368024 1 0.150428950786591 experiment 0.652072139263952 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879306 chr1:879321 nonsynonymous SNV 1.000 0 36 hm5C_associated_SNPs_36923 0 0 0 0 2 SAMD11 chr1:879273 3'AG 879273 Downstream 49bp
chr1 879321 879321 1 + G A STAD 879306 + 879286 879326 41 AGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGGCCAGC AGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGACCAGC < 41bp 1 0.673963930368024 1 0.150428950786591 experiment 0.652072139263952 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879306 chr1:879321 nonsynonymous SNV 1.000 0 36 hm5C_associated_SNPs_36923 0 0 0 0 2 SAMD11 chr1:879288 3'AG 879288 Downstream 34bp
chr14 61346478 61346478 1 + T C STAD 61346465 + 61346445 61346485 41 CACTGGCACCTATTCACAAGCTTGAAGAAGCTCTGTATGAA CACTGGCACCTATTCACAAGCTTGAAGAAGCTCCGTATGAA < 41bp 1 0.619394439752875 1 0.526323616504669 experiment 0.761211120494249 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61346465 chr14:61346478 nonsynonymous SNV 0.996 1 34 hm5C_associated_SNPs_36924 0 0 1 0 1 MNAT1 chr14:61346553 5'GT 61346553 Upstream 76bp
chr2 227729830 227729830 1 + G A STAD 227729840 + 227729820 227729860 41 GAGCTGTGCTGTAGGTTTCTCAGGTAAGGGAGACAAAATTT GAGCTGTGCTATAGGTTTCTCAGGTAAGGGAGACAAAATTT < 41bp 1 0.676010134400929 1 0.493662774562836 experiment 0.647979731198142 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RHBDD1 ENSG00000144468 CDS Human protein_coding chr2:227729840 chr2:227729830 nonsynonymous SNV 0.971 1 11 hm5C_associated_SNPs_36925 0 0 1 0 1 RHBDD1 chr2:227729842 5'GT 227729842 Upstream 13bp
chr7 135333207 135333207 1 + A T STAD 135333200 + 135333180 135333220 41 GAGAATCACTACAAAAGAAACTTCTGGACATTGAAGGATTA GAGAATCACTACAAAAGAAACTTCTGGTCATTGAAGGATTA < 41bp 1 0.0647260782083815 1 0.0927473604679108 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135333200 chr7:135333207 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_36926 0 0 1 1 1 NUP205 chr7:135333152 3'AG 135333152 Downstream 56bp
chr11 598394 598394 1 + T A STAD 598413 + 598393 598433 41 GTCTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGCGACTG GACTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGCGACTG < 41bp 1 0.113836743680474 1 0.373584508895874 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:598413 chr11:598394 nonsynonymous SNV 0.154 3 2 hm5C_associated_SNPs_36927 0 0 1 0 1 PHRF1 chr11:598373 3'AG 598373 Downstream 22bp
chr9 100425241 100425241 1 + A G STAD 100425251 + 100425231 100425271 41 AAAAGGTTTCATGAAGTCTTCAAAACCCTAGCTGAAAGTGA AAAAGGTTTCGTGAAGTCTTCAAAACCCTAGCTGAAAGTGA < 41bp 1 0.274630448154106 1 0.727594912052155 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100425251 chr9:100425241 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_36928 0 0 1 0 2 NCBP1 chr9:100425236 3'AG 100425236 Downstream 6bp
chr9 100425241 100425241 1 + A G STAD 100425251 + 100425231 100425271 41 AAAAGGTTTCATGAAGTCTTCAAAACCCTAGCTGAAAGTGA AAAAGGTTTCGTGAAGTCTTCAAAACCCTAGCTGAAAGTGA < 41bp 1 0.274630448154106 1 0.727594912052155 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100425251 chr9:100425241 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_36928 0 0 1 0 2 NCBP1 chr9:100425329 5'GT 100425329 Upstream 89bp
chr5 134130617 134130617 1 + G T STAD 134130604 + 134130584 134130624 41 TATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGG TATGTTTTCAGCTACTTTCCCCAGAGCTATGGATGCTTTGG < 41bp 1 0.666522731660557 1 0.741197645664215 experiment 0.666954536678885 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134130604 chr5:134130617 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_36929 0 0 1 0 2 DDX46 chr5:134130540 3'AG 134130540 Downstream 78bp
chr5 134130617 134130617 1 + G T STAD 134130604 + 134130584 134130624 41 TATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGG TATGTTTTCAGCTACTTTCCCCAGAGCTATGGATGCTTTGG < 41bp 1 0.666522731660557 1 0.741197645664215 experiment 0.666954536678885 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134130604 chr5:134130617 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_36929 0 0 1 0 2 DDX46 chr5:134130704 5'GT 134130704 Upstream 88bp
chr5 134130617 134130617 1 + G T STAD 134130605 + 134130585 134130625 41 ATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGGC ATGTTTTCAGCTACTTTCCCCAGAGCTATGGATGCTTTGGC < 41bp 1 0.409074325950761 1 0.293816983699799 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134130605 chr5:134130617 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_36930 0 0 1 0 2 DDX46 chr5:134130540 3'AG 134130540 Downstream 78bp
chr5 134130617 134130617 1 + G T STAD 134130605 + 134130585 134130625 41 ATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGGC ATGTTTTCAGCTACTTTCCCCAGAGCTATGGATGCTTTGGC < 41bp 1 0.409074325950761 1 0.293816983699799 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134130605 chr5:134130617 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_36930 0 0 1 0 2 DDX46 chr5:134130704 5'GT 134130704 Upstream 88bp
chr14 96998729 96998729 1 + T C STAD 96998728 + 96998708 96998748 41 CATTGACAACTTCAGGTTAACTCTGAGAGCTATCAAACTAT CATTGACAACTTCAGGTTAACCCTGAGAGCTATCAAACTAT < 41bp 1 0.277209819505424 1 0.0395649969577789 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:96998728 chr14:96998729 synonymous SNV . 0 22 hm5C_associated_SNPs_36931 0 0 1 0 2 PAPOLA chr14:96998668 3'AG 96998668 Downstream 62bp
chr14 96998729 96998729 1 + T C STAD 96998728 + 96998708 96998748 41 CATTGACAACTTCAGGTTAACTCTGAGAGCTATCAAACTAT CATTGACAACTTCAGGTTAACCCTGAGAGCTATCAAACTAT < 41bp 1 0.277209819505424 1 0.0395649969577789 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:96998728 chr14:96998729 synonymous SNV . 0 22 hm5C_associated_SNPs_36931 0 0 1 0 2 PAPOLA chr14:96998757 5'GT 96998757 Upstream 29bp
chr15 69747800 69747800 1 + A G STAD 69747788 + 69747768 69747808 41 TGAGGAGAAGAAAGTGGAAGCAAAGAAAGAAGAATCCGAGG TGAGGAGAAGAAAGTGGAAGCAAAGAAAGAAGGATCCGAGG < 41bp 1 0.462281660590527 1 0.780125498771667 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747788 chr15:69747800 nonsynonymous SNV 0.990 3 33 hm5C_associated_SNPs_36932 0 0 1 0 1 RPLP1 chr15:69747767 3'AG 69747767 Downstream 34bp
chr15 69747800 69747800 1 + A G STAD 69747803 + 69747783 69747823 41 GGAAGCAAAGAAAGAAGAATCCGAGGAGTCTGATGATGACA GGAAGCAAAGAAAGAAGGATCCGAGGAGTCTGATGATGACA < 41bp 1 0.258568512297771 1 0.229977369308472 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747803 chr15:69747800 nonsynonymous SNV 0.990 3 18 hm5C_associated_SNPs_36933 0 0 1 0 1 RPLP1 chr15:69747767 3'AG 69747767 Downstream 34bp
chr4 146468016 146468016 1 + C T STAD 146468006 + 146467986 146468026 41 TCCAACAATAAGAACCGTTTCTGCCTTGGGCTGCTCTCCAA TCCAACAATAAGAACCGTTTCTGCCTTGGGTTGCTCTCCAA < 41bp 1 0.651316176840625 1 0.106463700532913 experiment 0.69736764631875 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146468006 chr4:146468016 synonymous SNV . 0 31 hm5C_associated_SNPs_36936 0 0 1 0 1 SMAD1 chr4:146468076 5'GT 146468076 Upstream 61bp
chr9 132482979 132482979 1 + C T STAD 132482973 + 132482953 132482993 41 AAGTCCTACAGCCAGGAGGCCGCCATCGAGCAGCCCGTGGC AAGTCCTACAGCCAGGAGGCCGCCATTGAGCAGCCCGTGGC < 41bp 1 0.734259454305231 1 0.439408719539642 experiment 0.531481091389538 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRX2 ENSG00000167157 CDS Human protein_coding chr9:132482973 chr9:132482979 synonymous SNV . 0 27 hm5C_associated_SNPs_36939 0 0 0 0 1 PRRX2 chr9:132483053 5'GT 132483053 Upstream 75bp
chr22 21288079 21288079 1 + A T STAD 21288090 + 21288070 21288110 41 TCCAAGCCCACCAATGGGATCTGTCTCAGCACCCAACCTGC TCCAAGCCCTCCAATGGGATCTGTCTCAGCACCCAACCTGC < 41bp 1 0.115164886831233 1 0.169505476951599 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRKL ENSG00000099942 CDS Human protein_coding chr22:21288090 chr22:21288079 synonymous SNV . 0 10 hm5C_associated_SNPs_36940 0 0 1 0 1 CRKL chr22:21288067 3'AG 21288067 Downstream 13bp
chr22 21288079 21288079 1 + A T STAD 21288099 + 21288079 21288119 41 ACCAATGGGATCTGTCTCAGCACCCAACCTGCCTACAGCAG TCCAATGGGATCTGTCTCAGCACCCAACCTGCCTACAGCAG < 41bp 1 0.324956166987337 1 0.304866909980774 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CRKL ENSG00000099942 CDS Human protein_coding chr22:21288099 chr22:21288079 synonymous SNV . 0 1 hm5C_associated_SNPs_36941 0 0 1 0 1 CRKL chr22:21288067 3'AG 21288067 Downstream 13bp
chr14 100367326 100367326 1 + G T STAD 100367316 + 100367296 100367336 41 TCTGTGACATTGAATACTCTCCACGTCATTGGAATAGGTTT TCTGTGACATTGAATACTCTCCACGTCATTTGAATAGGTTT < 41bp 1 0.200043114921459 1 0.519323348999023 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EML1 ENSG00000066629 CDS Human protein_coding chr14:100367316 chr14:100367326 stopgain 0.981 1 31 hm5C_associated_SNPs_36942 0 0 1 0 2 EML1 chr14:100367266 3'AG 100367266 Downstream 61bp
chr14 100367326 100367326 1 + G T STAD 100367316 + 100367296 100367336 41 TCTGTGACATTGAATACTCTCCACGTCATTGGAATAGGTTT TCTGTGACATTGAATACTCTCCACGTCATTTGAATAGGTTT < 41bp 1 0.200043114921459 1 0.519323348999023 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EML1 ENSG00000066629 CDS Human protein_coding chr14:100367316 chr14:100367326 stopgain 0.981 1 31 hm5C_associated_SNPs_36942 0 0 1 0 2 EML1 chr14:100367376 5'GT 100367376 Upstream 51bp
chr11 71946494 71946494 1 + C T STAD 71946476 + 71946456 71946496 41 GTGCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGG GTGCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTATGG < 41bp 1 0.375640587709472 1 0.0293405950069427 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946476 chr11:71946494 synonymous SNV . 0 39 hm5C_associated_SNPs_36943 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 2bp
chr11 71946494 71946494 1 + C T STAD 71946478 + 71946458 71946498 41 GCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTG GCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTATGGTG < 41bp 1 0.323997836748546 1 0.0983560979366302 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946478 chr11:71946494 synonymous SNV . 0 37 hm5C_associated_SNPs_36944 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 2bp
chr11 71946494 71946494 1 + C T STAD 71946479 + 71946459 71946499 41 CCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTGG CCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTATGGTGG < 41bp 1 0.158951017330014 1 0.478678941726685 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946479 chr11:71946494 synonymous SNV . 0 36 hm5C_associated_SNPs_36945 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 2bp
chr11 71946494 71946494 1 + C T STAD 71946480 + 71946460 71946500 41 CCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTGGG CCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTATGGTGGG < 41bp 1 0.748887811883654 1 0.581266224384308 experiment 0.502224376232692 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946480 chr11:71946494 synonymous SNV . 0 35 hm5C_associated_SNPs_36946 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 2bp
chr1 118477161 118477161 1 + C T STAD 118477159 + 118477139 118477179 41 GCCCCTCCCCAGATGGGCTACACTTAGCTGTTGGGTATGAG GCCCCTCCCCAGATGGGCTACATTTAGCTGTTGGGTATGAG < 41bp 1 0.0537510801201146 1 0.0220582187175751 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient WDR3 ENSG00000065183 CDS Human protein_coding chr1:118477159 chr1:118477161 synonymous SNV . 0 23 hm5C_associated_SNPs_36948 0 0 1 0 1 WDR3 chr1:118477096 3'AG 118477096 Downstream 66bp
chr1 46496749 46496749 1 + C T STAD 46496735 + 46496715 46496755 41 CACAGAGAGTGACTCAAGCCCTCCAATGACAGTGCGACGCC CACAGAGAGTGACTCAAGCCCTCCAATGACAGTGTGACGCC < 41bp 1 0.767796927101222 1 0.980819582939148 experiment 0.464406145797556 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MAST2 ENSG00000086015 CDS Human protein_coding chr1:46496735 chr1:46496749 stopgain 0.939 1 35 hm5C_associated_SNPs_36950 0 0 0 0 1 MAST2 chr1:46496679 3'AG 46496679 Downstream 71bp
chr5 131976465 131976465 1 + A G STAD 131976460 + 131976440 131976480 41 AGCCAACAACAAATCTTGACCGAGAAAACATTGAATCTCTT AGCCAACAACAAATCTTGACCGAGAGAACATTGAATCTCTT < 41bp 1 0.700879229954169 1 0.624079883098602 experiment 0.598241540091663 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131976460 chr5:131976465 synonymous SNV . 0 26 hm5C_associated_SNPs_36952 0 0 1 0 1 RAD50 chr5:131976497 5'GT 131976497 Upstream 33bp
chr12 58109590 58109590 1 + C T STAD 58109596 + 58109576 58109616 41 GACTACATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTA GACTACATCGATCGTGTGGACGAGCCCTTGTCCTGCTCTTA < 41bp 1 0.438966852805396 1 0.46274870634079 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OS9 ENSG00000135506 CDS Human protein_coding chr12:58109596 chr12:58109590 synonymous SNV . 0 15 hm5C_associated_SNPs_36956 0 0 1 0 1 OS9 chr12:58109543 3'AG 58109543 Downstream 48bp
chr12 58109590 58109590 1 + C T STAD 58109602 + 58109582 58109622 41 ATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTATGTGCT ATCGATCGTGTGGACGAGCCCTTGTCCTGCTCTTATGTGCT < 41bp 1 0.401407740976751 1 0.0412681102752686 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient OS9 ENSG00000135506 CDS Human protein_coding chr12:58109602 chr12:58109590 synonymous SNV . 0 9 hm5C_associated_SNPs_36957 0 0 1 0 1 OS9 chr12:58109543 3'AG 58109543 Downstream 48bp
chr17 37359273 37359273 1 + G T STAD 37359287 + 37359267 37359307 41 CCGAATGCCAGAGAAGGTCACATGGATGAGGAGAATGAGGA CCGAATTCCAGAGAAGGTCACATGGATGAGGAGAATGAGGA < 41bp 1 0.433724196089659 1 0.290698826313019 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359287 chr17:37359273 nonsynonymous SNV 0.990 2 7 hm5C_associated_SNPs_36959 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 32bp
chr17 37359273 37359273 1 + G T STAD 37359287 + 37359267 37359307 41 CCGAATGCCAGAGAAGGTCACATGGATGAGGAGAATGAGGA CCGAATTCCAGAGAAGGTCACATGGATGAGGAGAATGAGGA < 41bp 1 0.433724196089659 1 0.290698826313019 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359287 chr17:37359273 nonsynonymous SNV 0.990 2 7 hm5C_associated_SNPs_36959 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 90bp
chr8 124787521 124787521 1 + T C STAD 124787510 + 124787490 124787530 41 GAAAGGCTTGAGGATAACACCATTTTCATATTATACTGGGA GAAAGGCTTGAGGATAACACCATTTTCATATCATACTGGGA < 41bp 1 0.0914636985078387 1 0.227232575416565 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787510 chr8:124787521 nonsynonymous SNV 0.978 3 32 hm5C_associated_SNPs_36960 0 0 0 0 1 FAM91A1 chr8:124787538 5'GT 124787538 Upstream 18bp
chr4 119631225 119631225 1 + C T STAD 119631220 + 119631200 119631240 41 GAAACATATGCATCCTATTTCAGTGCTCCTAATTCCTACTT GAAACATATGCATCCTATTTCAGTGTTCCTAATTCCTACTT < 41bp 1 0.597765866067689 1 0.365167498588562 experiment 0.804468267864622 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control METTL14 ENSG00000145388 CDS Human protein_coding chr4:119631220 chr4:119631225 nonsynonymous SNV 0.904 0 26 hm5C_associated_SNPs_36961 0 0 1 0 1 METTL14 chr4:119631153 3'AG 119631153 Downstream 73bp
chr16 12450122 12450122 1 + G A STAD 12450135 + 12450115 12450155 41 GCTCATCGATCTCCGGGGACCGGTGAGTGTTTCCCCAACCC GCTCATCAATCTCCGGGGACCGGTGAGTGTTTCCCCAACCC < 41bp 1 0.355150423374034 1 0.429778933525085 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12450135 chr16:12450122 nonsynonymous SNV 0.875 1 8 hm5C_associated_SNPs_36965 0 0 1 0 1 SNX29 chr16:12450136 5'GT 12450136 Upstream 15bp
chr8 41355108 41355108 1 + A G STAD 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTCGGCGGCCAGTCGTATCTCGAAGGTTGT < 41bp 1 0.186183492773327 1 0.314176797866821 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355108 synonymous SNV . 0 26 hm5C_associated_SNPs_36966 0 0 1 0 2 GOLGA7 chr8:41355028 3'AG 41355028 Downstream 81bp
chr8 41355108 41355108 1 + A G STAD 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTCGGCGGCCAGTCGTATCTCGAAGGTTGT < 41bp 1 0.186183492773327 1 0.314176797866821 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355108 synonymous SNV . 0 26 hm5C_associated_SNPs_36966 0 0 1 0 2 GOLGA7 chr8:41355180 5'GT 41355180 Upstream 73bp
chr12 64878159 64878159 1 + C T STAD 64878177 + 64878157 64878197 41 GGCGACGCTTAGTCTTAGAACCTGGAAGGCTGGCACAACAT GGTGACGCTTAGTCTTAGAACCTGGAAGGCTGGCACAACAT < 41bp 1 0.393497882328777 1 0.471804559230804 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBK1 ENSG00000183735 CDS Human protein_coding chr12:64878177 chr12:64878159 stopgain 0.981 1 3 hm5C_associated_SNPs_36971 0 0 1 0 1 TBK1 chr12:64878083 3'AG 64878083 Downstream 77bp
chr10 102824622 102824622 1 + T C STAD 102824602 + 102824582 102824622 41 GACCAGCTGAACTCTACAGGCATCCCCCAGCTGCGATCACT GACCAGCTGAACTCTACAGGCATCCCCCAGCTGCGATCACC < 41bp 1 0.0389411136064353 1 0.0369264185428619 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824602 chr10:102824622 nonsynonymous SNV 0.049 0 41 hm5C_associated_SNPs_36972 0 0 1 1 2 KAZALD1 chr10:102824583 3'AG 102824583 Downstream 40bp
chr10 102824622 102824622 1 + T C STAD 102824602 + 102824582 102824622 41 GACCAGCTGAACTCTACAGGCATCCCCCAGCTGCGATCACT GACCAGCTGAACTCTACAGGCATCCCCCAGCTGCGATCACC < 41bp 1 0.0389411136064353 1 0.0369264185428619 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824602 chr10:102824622 nonsynonymous SNV 0.049 0 41 hm5C_associated_SNPs_36972 0 0 1 1 2 KAZALD1 chr10:102824700 5'GT 102824700 Upstream 79bp
chrX 69639532 69639532 1 + C T STAD 69639552 + 69639532 69639572 41 CGGACCCAGGATTCCGAAGGCTCCTTCAAACTGGAGGATCC TGGACCCAGGATTCCGAAGGCTCCTTCAAACTGGAGGATCC < 41bp 1 0.33922377495632 1 0.341588944196701 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639552 chrX:69639532 nonsynonymous SNV 0.178 0 1 hm5C_associated_SNPs_36973 0 0 1 0 1 KIF4A chrX:69639511 3'AG 69639511 Downstream 22bp
chr3 196304328 196304328 1 + G A STAD 196304336 + 196304316 196304356 41 CTTTTTAGATACGTGCTTTTCAACATGCCTTCAGCACTAAT CTTTTTAGATACATGCTTTTCAACATGCCTTCAGCACTAAT < 41bp 1 0.555543702744456 1 0.43685594201088 experiment 0.888912594511088 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO45 ENSG00000174013 CDS Human protein_coding chr3:196304336 chr3:196304328 nonsynonymous SNV 0.990 4 13 hm5C_associated_SNPs_36974 0 0 0 0 1 FBXO45 chr3:196304324 3'AG 196304324 Downstream 5bp
chr12 72316783 72316783 1 + T C STAD 72316769 + 72316749 72316789 41 TTTTTCATATCCAGGAATTGCCACAAGCAGTCTGTGAGATC TTTTTCATATCCAGGAATTGCCACAAGCAGTCTGCGAGATC < 41bp 1 0.399784884100026 1 0.103412002325058 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72316769 chr12:72316783 synonymous SNV . 0 35 hm5C_associated_SNPs_36975 0 0 1 0 1 TBC1D15 chr12:72316763 3'AG 72316763 Downstream 21bp
chr3 32493939 32493939 1 + A C STAD 32493943 + 32493923 32493963 41 ATATGGCTGTCCTATAAGATCTCGTGTGTAACCCAGTCCAC ATATGGCTGTCCTATACGATCTCGTGTGTAACCCAGTCCAC < 41bp 1 0.767797422630531 1 0.180410027503967 experiment 0.464405154738939 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32493943 chr3:32493939 nonsynonymous SNV 0.841 4 17 hm5C_associated_SNPs_36976 0 0 1 0 2 CMTM7 chr3:32493884 3'AG 32493884 Downstream 56bp
chr3 32493939 32493939 1 + A C STAD 32493943 + 32493923 32493963 41 ATATGGCTGTCCTATAAGATCTCGTGTGTAACCCAGTCCAC ATATGGCTGTCCTATACGATCTCGTGTGTAACCCAGTCCAC < 41bp 1 0.767797422630531 1 0.180410027503967 experiment 0.464405154738939 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32493943 chr3:32493939 nonsynonymous SNV 0.841 4 17 hm5C_associated_SNPs_36976 0 0 1 0 2 CMTM7 chr3:32493965 5'GT 32493965 Upstream 27bp
chr16 28845679 28845679 1 + C A STAD 28845668 + 28845648 28845688 41 GTGTCCTCATCCCCAGGCACCTCAGATGTATCCATATCCTG GTGTCCTCATCCCCAGGCACCTCAGATGTATACATATCCTG < 41bp 1 0.300331237834003 1 0.0915851891040802 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28845668 chr16:28845679 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_36978 0 0 1 0 2 ATXN2L chr16:28845664 3'AG 28845664 Downstream 16bp
chr16 28845679 28845679 1 + C A STAD 28845668 + 28845648 28845688 41 GTGTCCTCATCCCCAGGCACCTCAGATGTATCCATATCCTG GTGTCCTCATCCCCAGGCACCTCAGATGTATACATATCCTG < 41bp 1 0.300331237834003 1 0.0915851891040802 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28845668 chr16:28845679 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_36978 0 0 1 0 2 ATXN2L chr16:28845736 5'GT 28845736 Upstream 58bp
chr12 122213555 122213555 1 + G A STAD 122213570 + 122213550 122213590 41 CCTCGGCAACTTCCTGACCACGCTCAAAGTCGTGCATGCCA CCTCGACAACTTCCTGACCACGCTCAAAGTCGTGCATGCCA < 41bp 1 0.104575707268593 1 0.101102143526077 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM120B ENSG00000188735 CDS Human protein_coding chr12:122213570 chr12:122213555 nonsynonymous SNV 0.945 4 6 hm5C_associated_SNPs_36979 0 0 1 0 1 TMEM120B chr12:122213515 3'AG 122213515 Downstream 41bp
chr5 139928648 139928648 1 + G T STAD 139928628 + 139928608 139928648 41 CTCTCTCCAAGCTGGAGGAGCTGAAGGAGCAGGAGACAGAG CTCTCTCCAAGCTGGAGGAGCTGAAGGAGCAGGAGACAGAT < 41bp 1 0.573086724830526 1 0.406953275203705 experiment 0.853826550338948 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANKHD1-EIF4EBP3;EIF4EBP3 ENSG00000131503;ENSG00000243056;ENSG00000254996 CDS Human other chr5:139928628 chr5:139928648 stopgain 1.000 0 41 hm5C_associated_SNPs_36980 0 0 1 0 1 ANKHD1-EIF4EBP3;EIF4EBP3 chr5:139928661 5'GT 139928661 Upstream 14bp
chr22 39382383 39382383 1 + G A STAD 39382388 + 39382368 39382408 41 TTCGATGAAAATTATGCATTCCTGCACCGCACGCTAAAGGA TTCGATGAAAATTATACATTCCTGCACCGCACGCTAAAGGA < 41bp 1 0.0633333707516287 1 0.0823869407176971 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control APOBEC3B ENSG00000179750 CDS Human protein_coding chr22:39382388 chr22:39382383 nonsynonymous SNV 0.001 0 16 hm5C_associated_SNPs_36981 0 0 0 0 2 APOBEC3B chr22:39382303 3'AG 39382303 Downstream 81bp
chr22 39382383 39382383 1 + G A STAD 39382388 + 39382368 39382408 41 TTCGATGAAAATTATGCATTCCTGCACCGCACGCTAAAGGA TTCGATGAAAATTATACATTCCTGCACCGCACGCTAAAGGA < 41bp 1 0.0633333707516287 1 0.0823869407176971 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control APOBEC3B ENSG00000179750 CDS Human protein_coding chr22:39382388 chr22:39382383 nonsynonymous SNV 0.001 0 16 hm5C_associated_SNPs_36981 0 0 0 0 2 APOBEC3B chr22:39382417 5'GT 39382417 Upstream 35bp
chr16 8735041 8735041 1 + G T STAD 8735032 + 8735012 8735052 41 TGGACTGGCTGAAGGACGACCTCTGCACAGGTGTGTGTTTC TGGACTGGCTGAAGGACGACCTCTGCACATGTGTGTGTTTC < 41bp 1 0.203623980524975 1 0.378254532814026 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control METTL22 ENSG00000067365 CDS Human protein_coding chr16:8735032 chr16:8735041 nonsynonymous SNV 0.969 4 30 hm5C_associated_SNPs_36983 0 0 1 0 2 METTL22 chr16:8734988 3'AG 8734988 Downstream 54bp
chr16 8735041 8735041 1 + G T STAD 8735032 + 8735012 8735052 41 TGGACTGGCTGAAGGACGACCTCTGCACAGGTGTGTGTTTC TGGACTGGCTGAAGGACGACCTCTGCACATGTGTGTGTTTC < 41bp 1 0.203623980524975 1 0.378254532814026 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control METTL22 ENSG00000067365 CDS Human protein_coding chr16:8735032 chr16:8735041 nonsynonymous SNV 0.969 4 30 hm5C_associated_SNPs_36983 0 0 1 0 2 METTL22 chr16:8735041 5'GT 8735041 Upstream 1bp
chr2 113243546 113243546 1 + A G STAD 113243539 + 113243519 113243559 41 GGTGAATTACTACAGGGGTGCTGACAAACTGTGTCGCAAAG GGTGAATTACTACAGGGGTGCTGACAAGCTGTGTCGCAAAG < 41bp 1 0.270143085720802 1 0.123491704463959 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113243539 chr2:113243546 synonymous SNV . 0 28 hm5C_associated_SNPs_36984 0 0 1 0 2 TTL chr2:113243494 3'AG 113243494 Downstream 53bp
chr2 113243546 113243546 1 + A G STAD 113243539 + 113243519 113243559 41 GGTGAATTACTACAGGGGTGCTGACAAACTGTGTCGCAAAG GGTGAATTACTACAGGGGTGCTGACAAGCTGTGTCGCAAAG < 41bp 1 0.270143085720802 1 0.123491704463959 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113243539 chr2:113243546 synonymous SNV . 0 28 hm5C_associated_SNPs_36984 0 0 1 0 2 TTL chr2:113243572 5'GT 113243572 Upstream 27bp
chr3 179104341 179104341 1 + T C STAD 179104323 + 179104303 179104343 41 GGACCACCCATGCCAAGGAGCGAGCCTTTAAACAGCAGTTT GGACCACCCATGCCAAGGAGCGAGCCTTTAAACAGCAGCTT < 41bp 1 0.403162863006912 1 0.427637100219727 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MFN1 ENSG00000171109 CDS Human protein_coding chr3:179104323 chr3:179104341 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_36985 0 0 1 1 1 MFN1 chr3:179104417 5'GT 179104417 Upstream 77bp
chr6 11565992 11565992 1 + A T STAD 11565991 + 11565971 11566011 41 TGTTTGTGATGCTGCAGAGGCATAGGCAGGGAAGAGTCATC TGTTTGTGATGCTGCAGAGGCTTAGGCAGGGAAGAGTCATC < 41bp 1 0.350136324695879 1 0.0957486033439636 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMEM170B ENSG00000205269 CDS Human protein_coding chr6:11565991 chr6:11565992 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_36986 0 0 1 0 2 TMEM170B chr6:11565899 3'AG 11565899 Downstream 94bp
chr6 11565992 11565992 1 + A T STAD 11565991 + 11565971 11566011 41 TGTTTGTGATGCTGCAGAGGCATAGGCAGGGAAGAGTCATC TGTTTGTGATGCTGCAGAGGCTTAGGCAGGGAAGAGTCATC < 41bp 1 0.350136324695879 1 0.0957486033439636 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMEM170B ENSG00000205269 CDS Human protein_coding chr6:11565991 chr6:11565992 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_36986 0 0 1 0 2 TMEM170B chr6:11566069 5'GT 11566069 Upstream 78bp
chr3 45559430 45559430 1 + C T STAD 45559415 + 45559395 45559435 41 CTGATGCTCTCCCTGGGGTGCTGAGATGGCAACAACGACTG CTGATGCTCTCCCTGGGGTGCTGAGATGGCAACAATGACTG < 41bp 1 0.400371419376464 1 0.148492366075516 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LARS2 ENSG00000011376 CDS Human protein_coding chr3:45559415 chr3:45559430 stopgain 0.929 1 36 hm5C_associated_SNPs_36990 0 0 1 0 1 LARS2 chr3:45559395 3'AG 45559395 Downstream 36bp
chr11 61511088 61511088 1 + G T STAD 61511075 + 61511055 61511095 41 GCTGTCGCCAGTGGTTGCGGCGGCGGCCCGCCAGGACCCGG GCTGTCGCCAGTGGTTGCGGCGGCGGCCCGCCATGACCCGG < 41bp 1 0.595614218099104 1 0.878758668899536 experiment 0.808771563801793 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61511075 chr11:61511088 nonsynonymous SNV 0.786 1 34 hm5C_associated_SNPs_36992 0 0 0 0 1 DAGLA chr11:61511004 3'AG 61511004 Downstream 85bp
chrX 48399802 48399802 1 + A G STAD 48399810 + 48399790 48399830 41 GTGTTGCAGCACATCCTCATCCGAGCCTTTGATTTGAGTGG GTGTTGCAGCACGTCCTCATCCGAGCCTTTGATTTGAGTGG < 41bp 1 0.495902799833226 1 0.321633756160736 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399810 chrX:48399802 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_36993 0 0 0 0 3 TBC1D25 chrX:48399721 3'AG 48399721 Downstream 82bp
chrX 48399802 48399802 1 + A G STAD 48399810 + 48399790 48399830 41 GTGTTGCAGCACATCCTCATCCGAGCCTTTGATTTGAGTGG GTGTTGCAGCACGTCCTCATCCGAGCCTTTGATTTGAGTGG < 41bp 1 0.495902799833226 1 0.321633756160736 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399810 chrX:48399802 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_36993 0 0 0 0 3 TBC1D25 chrX:48399830 5'GT 48399830 Upstream 29bp
chrX 48399802 48399802 1 + A G STAD 48399810 + 48399790 48399830 41 GTGTTGCAGCACATCCTCATCCGAGCCTTTGATTTGAGTGG GTGTTGCAGCACGTCCTCATCCGAGCCTTTGATTTGAGTGG < 41bp 1 0.495902799833226 1 0.321633756160736 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399810 chrX:48399802 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_36993 0 0 0 0 3 TBC1D25 chrX:48399901 5'GT 48399901 Upstream 100bp
chr10 89487102 89487102 1 + G A STAD 89487114 + 89487094 89487134 41 AAGACACGGCTGGAAGGGTGCAGCAAGTTTGTCCTGGCACA AAGACACGACTGGAAGGGTGCAGCAAGTTTGTCCTGGCACA < 41bp 1 0.740070370948432 1 0.601892411708832 experiment 0.519859258103136 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89487114 chr10:89487102 synonymous SNV . 0 9 hm5C_associated_SNPs_36994 0 0 0 1 1 PAPSS2 chr10:89487041 3'AG 89487041 Downstream 62bp
chr1 17272839 17272839 1 + T G STAD 17272843 + 17272823 17272863 41 GACTCCCTGTCCAAGCTGAGCGCCCTCAACGAGAGCCTTGC GACTCCCTGTCCAAGCGGAGCGCCCTCAACGAGAGCCTTGC < 41bp 1 0.112155953429489 1 0.0421853363513947 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CROCC ENSG00000058453 CDS Human protein_coding chr1:17272843 chr1:17272839 nonsynonymous SNV 0.946 1 17 hm5C_associated_SNPs_36995 0 0 0 0 2 CROCC chr1:17272754 3'AG 17272754 Downstream 86bp
chr1 17272839 17272839 1 + T G STAD 17272843 + 17272823 17272863 41 GACTCCCTGTCCAAGCTGAGCGCCCTCAACGAGAGCCTTGC GACTCCCTGTCCAAGCGGAGCGCCCTCAACGAGAGCCTTGC < 41bp 1 0.112155953429489 1 0.0421853363513947 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CROCC ENSG00000058453 CDS Human protein_coding chr1:17272843 chr1:17272839 nonsynonymous SNV 0.946 1 17 hm5C_associated_SNPs_36995 0 0 0 0 2 CROCC chr1:17272900 5'GT 17272900 Upstream 62bp
chr12 125603191 125603191 1 + G A STAD 125603189 + 125603169 125603209 41 TCCCTCCTGTCTTTGCAGGTCGGCTGGATGATGTGGAACTG TCCCTCCTGTCTTTGCAGGTCGACTGGATGATGTGGAACTG < 41bp 1 0.423919264469733 1 0.444404453039169 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AACS ENSG00000081760 CDS Human protein_coding chr12:125603189 chr12:125603191 nonsynonymous SNV 0.938 4 23 hm5C_associated_SNPs_36996 0 0 0 0 1 AACS chr12:125603187 3'AG 125603187 Downstream 5bp
chr20 57480479 57480479 1 + A G STAD 57480488 + 57480468 57480508 41 GAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA GAGGATGAAGGGGTGCGTGCCTGCTACGAACGCTCCAACGA < 41bp 1 0.572991956798792 1 0.367827594280243 experiment 0.854016086402415 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480488 chr20:57480479 synonymous SNV . 0 12 hm5C_associated_SNPs_36997 0 0 1 2 2 GNAS chr20:57480438 3'AG 57480438 Downstream 42bp
chr20 57480479 57480479 1 + A G STAD 57480488 + 57480468 57480508 41 GAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA GAGGATGAAGGGGTGCGTGCCTGCTACGAACGCTCCAACGA < 41bp 1 0.572991956798792 1 0.367827594280243 experiment 0.854016086402415 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480488 chr20:57480479 synonymous SNV . 0 12 hm5C_associated_SNPs_36997 0 0 1 2 2 GNAS chr20:57480535 5'GT 57480535 Upstream 57bp
chr1 145509207 145509207 1 + G A STAD 145509191 + 145509171 145509211 41 GCCGAAGACGCAGCAGAAGTCCAGACCGGAGACGTCGCTGA GCCGAAGACGCAGCAGAAGTCCAGACCGGAGACGTCACTGA < 41bp 1 0.33683533609304 1 0.394762217998505 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM8A ENSG00000131795 CDS Human other chr1:145509191 chr1:145509207 nonsynonymous SNV . 0 37 hm5C_associated_SNPs_37000 0 0 0 0 1 RBM8A chr1:145509166 3'AG 145509166 Downstream 42bp
chr1 145509207 145509207 1 + G A STAD 145509206 + 145509186 145509226 41 GAAGTCCAGACCGGAGACGTCGCTGACAGGTCCTCTGTTGT GAAGTCCAGACCGGAGACGTCACTGACAGGTCCTCTGTTGT < 41bp 1 0.153079819968647 1 0.0444760322570801 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM8A ENSG00000131795 CDS Human other chr1:145509206 chr1:145509207 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_37001 0 0 0 0 1 RBM8A chr1:145509166 3'AG 145509166 Downstream 42bp
chr6 5369396 5369396 1 + G A STAD 5369391 + 5369371 5369411 41 ATTTTCCACCAGCTGGAGGCCGTGCGGCTCTTCTCCAAGCA ATTTTCCACCAGCTGGAGGCCGTGCAGCTCTTCTCCAAGCA < 41bp 1 0.195293364338774 1 0.372743487358093 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FARS2 ENSG00000145982 CDS Human protein_coding chr6:5369391 chr6:5369396 nonsynonymous SNV 0.996 4 26 hm5C_associated_SNPs_37002 0 0 1 0 1 FARS2 chr6:5369415 5'GT 5369415 Upstream 20bp
chr3 50683579 50683579 1 + G A STAD 50683592 + 50683572 50683612 41 CTTTGTGGCTTCCCACCCTTCTACTCCAACACGGGCCAGGC CTTTGTGACTTCCCACCCTTCTACTCCAACACGGGCCAGGC < 41bp 1 0.355707084181018 1 0.217604100704193 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50683592 chr3:50683579 nonsynonymous SNV 0.996 4 8 hm5C_associated_SNPs_37005 0 0 1 0 1 MAPKAPK3 chr3:50683571 3'AG 50683571 Downstream 9bp
chr21 30411810 30411810 1 + G A STAD 30411804 + 30411784 30411824 41 CTTTTTGTTTTTCTCTAGAGCAGTGCGGTTTAAAGGCTATC CTTTTTGTTTTTCTCTAGAGCAGTGCAGTTTAAAGGCTATC < 41bp 1 0.253083281300632 1 0.130254179239273 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP16 ENSG00000156256 CDS Human protein_coding chr21:30411804 chr21:30411810 nonsynonymous SNV 0.943 4 27 hm5C_associated_SNPs_37008 0 0 1 0 2 USP16 chr21:30411802 3'AG 30411802 Downstream 9bp
chr21 30411810 30411810 1 + G A STAD 30411804 + 30411784 30411824 41 CTTTTTGTTTTTCTCTAGAGCAGTGCGGTTTAAAGGCTATC CTTTTTGTTTTTCTCTAGAGCAGTGCAGTTTAAAGGCTATC < 41bp 1 0.253083281300632 1 0.130254179239273 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP16 ENSG00000156256 CDS Human protein_coding chr21:30411804 chr21:30411810 nonsynonymous SNV 0.943 4 27 hm5C_associated_SNPs_37008 0 0 1 0 2 USP16 chr21:30411889 5'GT 30411889 Upstream 80bp
chr10 17275845 17275845 1 + C T STAD 17275853 + 17275833 17275873 41 AGCCTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAA AGCCTGACCTCATGGCTGCCCTGCGTGACGTACGTCAGCAA < 41bp 1 0.651629762763347 1 0.779238402843475 experiment 0.696740474473305 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275853 chr10:17275845 nonsynonymous SNV 0.999 5 13 hm5C_associated_SNPs_37009 0 0 1 0 2 VIM chr10:17275769 3'AG 17275769 Downstream 77bp
chr10 17275845 17275845 1 + C T STAD 17275853 + 17275833 17275873 41 AGCCTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAA AGCCTGACCTCATGGCTGCCCTGCGTGACGTACGTCAGCAA < 41bp 1 0.651629762763347 1 0.779238402843475 experiment 0.696740474473305 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275853 chr10:17275845 nonsynonymous SNV 0.999 5 13 hm5C_associated_SNPs_37009 0 0 1 0 2 VIM chr10:17275930 5'GT 17275930 Upstream 86bp
chr10 17275845 17275845 1 + C T STAD 17275856 + 17275836 17275876 41 CTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAATAT CTGACCTCATGGCTGCCCTGCGTGACGTACGTCAGCAATAT < 41bp 1 0.403729767074679 1 0.108016759157181 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275856 chr10:17275845 nonsynonymous SNV 0.999 5 10 hm5C_associated_SNPs_37010 0 0 1 0 2 VIM chr10:17275769 3'AG 17275769 Downstream 77bp
chr10 17275845 17275845 1 + C T STAD 17275856 + 17275836 17275876 41 CTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAATAT CTGACCTCATGGCTGCCCTGCGTGACGTACGTCAGCAATAT < 41bp 1 0.403729767074679 1 0.108016759157181 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275856 chr10:17275845 nonsynonymous SNV 0.999 5 10 hm5C_associated_SNPs_37010 0 0 1 0 2 VIM chr10:17275930 5'GT 17275930 Upstream 86bp
chr10 17275845 17275845 1 + C T STAD 17275861 + 17275841 17275881 41 CTCACGGCTGCCCTGCGTGACGTACGTCAGCAATATGAAAG CTCATGGCTGCCCTGCGTGACGTACGTCAGCAATATGAAAG < 41bp 1 0.11013117230647 1 0.0413139164447784 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275861 chr10:17275845 nonsynonymous SNV 0.999 5 5 hm5C_associated_SNPs_37011 0 0 1 0 2 VIM chr10:17275769 3'AG 17275769 Downstream 77bp
chr10 17275845 17275845 1 + C T STAD 17275861 + 17275841 17275881 41 CTCACGGCTGCCCTGCGTGACGTACGTCAGCAATATGAAAG CTCATGGCTGCCCTGCGTGACGTACGTCAGCAATATGAAAG < 41bp 1 0.11013117230647 1 0.0413139164447784 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275861 chr10:17275845 nonsynonymous SNV 0.999 5 5 hm5C_associated_SNPs_37011 0 0 1 0 2 VIM chr10:17275930 5'GT 17275930 Upstream 86bp
chr5 169127051 169127051 1 + A G STAD 169127059 + 169127039 169127079 41 TGCTGGTGGGTGACATCATTCAGATTCGCAAGGACTATCCA TGCTGGTGGGTGGCATCATTCAGATTCGCAAGGACTATCCA < 41bp 1 0.528922065077179 1 0.843352317810059 experiment 0.942155869845642 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169127059 chr5:169127051 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_37012 0 0 1 0 2 DOCK2 chr5:169127018 3'AG 169127018 Downstream 34bp
chr5 169127051 169127051 1 + A G STAD 169127059 + 169127039 169127079 41 TGCTGGTGGGTGACATCATTCAGATTCGCAAGGACTATCCA TGCTGGTGGGTGGCATCATTCAGATTCGCAAGGACTATCCA < 41bp 1 0.528922065077179 1 0.843352317810059 experiment 0.942155869845642 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169127059 chr5:169127051 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_37012 0 0 1 0 2 DOCK2 chr5:169127143 5'GT 169127143 Upstream 93bp
chr22 40697276 40697276 1 + C T STAD 40697295 + 40697275 40697315 41 ACGCATTGAATGTGGGGCTCCCAGACCTTCAAACCAAAGGG ATGCATTGAATGTGGGGCTCCCAGACCTTCAAACCAAAGGG < 41bp 1 0.190786038043668 1 0.493287831544876 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40697295 chr22:40697276 synonymous SNV . 0 2 hm5C_associated_SNPs_37015 0 0 1 0 1 TNRC6B chr22:40697337 5'GT 40697337 Upstream 62bp
chr3 10320676 10320676 1 + G A STAD 10320677 + 10320657 10320697 41 CCCTCACCTTGGCTGCCTTGCGTGAGAACACCAGTCGCCTC CCCTCACCTTGGCTGCCTTACGTGAGAACACCAGTCGCCTC < 41bp 1 0.793629554494405 1 0.740687251091003 experiment 0.41274089101119 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TATDN2 ENSG00000157014 CDS Human other chr3:10320677 chr3:10320676 synonymous SNV . 0 20 hm5C_associated_SNPs_37016 0 0 1 0 2 TATDN2 chr3:10320718 5'GT 10320718 Upstream 43bp
chr3 10320676 10320676 1 + G A STAD 10320677 + 10320657 10320697 41 CCCTCACCTTGGCTGCCTTGCGTGAGAACACCAGTCGCCTC CCCTCACCTTGGCTGCCTTACGTGAGAACACCAGTCGCCTC < 41bp 1 0.793629554494405 1 0.740687251091003 experiment 0.41274089101119 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TATDN2 ENSG00000157014 CDS Human protein_coding chr3:10320677 chr3:10320676 synonymous SNV . 0 20 hm5C_associated_SNPs_37016 0 0 1 0 2 TATDN2 chr3:10320747 5'GT 10320747 Upstream 72bp
chr3 10320676 10320676 1 + G A STAD 10320688 + 10320668 10320708 41 GCTGCCTTGCGTGAGAACACCAGTCGCCTCTACAGTCTTTA GCTGCCTTACGTGAGAACACCAGTCGCCTCTACAGTCTTTA < 41bp 1 0.144090389894953 1 0.116946876049042 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TATDN2 ENSG00000157014 CDS Human other chr3:10320688 chr3:10320676 synonymous SNV . 0 9 hm5C_associated_SNPs_37017 0 0 1 0 2 TATDN2 chr3:10320718 5'GT 10320718 Upstream 43bp
chr3 10320676 10320676 1 + G A STAD 10320688 + 10320668 10320708 41 GCTGCCTTGCGTGAGAACACCAGTCGCCTCTACAGTCTTTA GCTGCCTTACGTGAGAACACCAGTCGCCTCTACAGTCTTTA < 41bp 1 0.144090389894953 1 0.116946876049042 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TATDN2 ENSG00000157014 CDS Human protein_coding chr3:10320688 chr3:10320676 synonymous SNV . 0 9 hm5C_associated_SNPs_37017 0 0 1 0 2 TATDN2 chr3:10320747 5'GT 10320747 Upstream 72bp
chr17 30806294 30806294 1 + T A STAD 30806305 + 30806285 30806325 41 GGGCAGAGCTCCGGGATGACCCAATCATCAGCACACACTTG GGGCAGAGCACCGGGATGACCCAATCATCAGCACACACTTG < 41bp 1 0.187622000045355 1 0.260987907648087 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30806305 chr17:30806294 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_37018 0 0 1 0 1 PSMD11 chr17:30806269 3'AG 30806269 Downstream 26bp
chr17 48154422 48154422 1 + C T STAD 48154408 + 48154388 48154428 41 CGAACACCCGGACCTCGGAGCGCTCCGGGGAGGACGCCCAC CGAACACCCGGACCTCGGAGCGCTCCGGGGAGGATGCCCAC < 41bp 1 0.115233219455647 1 0.190555453300476 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48154408 chr17:48154422 synonymous SNV . 0 35 hm5C_associated_SNPs_37021 0 0 0 0 2 ITGA3 chr17:48154338 3'AG 48154338 Downstream 85bp
chr17 48154422 48154422 1 + C T STAD 48154408 + 48154388 48154428 41 CGAACACCCGGACCTCGGAGCGCTCCGGGGAGGACGCCCAC CGAACACCCGGACCTCGGAGCGCTCCGGGGAGGATGCCCAC < 41bp 1 0.115233219455647 1 0.190555453300476 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48154408 chr17:48154422 synonymous SNV . 0 35 hm5C_associated_SNPs_37021 0 0 0 0 2 ITGA3 chr17:48154485 5'GT 48154485 Upstream 64bp
chr17 48154422 48154422 1 + C T STAD 48154410 + 48154390 48154430 41 AACACCCGGACCTCGGAGCGCTCCGGGGAGGACGCCCACGA AACACCCGGACCTCGGAGCGCTCCGGGGAGGATGCCCACGA < 41bp 1 0.657847193190022 1 0.723899602890015 experiment 0.684305613619955 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48154410 chr17:48154422 synonymous SNV . 0 33 hm5C_associated_SNPs_37022 0 0 0 0 2 ITGA3 chr17:48154338 3'AG 48154338 Downstream 85bp
chr17 48154422 48154422 1 + C T STAD 48154410 + 48154390 48154430 41 AACACCCGGACCTCGGAGCGCTCCGGGGAGGACGCCCACGA AACACCCGGACCTCGGAGCGCTCCGGGGAGGATGCCCACGA < 41bp 1 0.657847193190022 1 0.723899602890015 experiment 0.684305613619955 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48154410 chr17:48154422 synonymous SNV . 0 33 hm5C_associated_SNPs_37022 0 0 0 0 2 ITGA3 chr17:48154485 5'GT 48154485 Upstream 64bp
chr17 59161841 59161841 1 + C T STAD 59161840 + 59161820 59161860 41 CATTGCAGGATCCAGCCAGTCCGCTCTGACCCCGTCAGCAT CATTGCAGGATCCAGCCAGTCTGCTCTGACCCCGTCAGCAT < 41bp 1 0.489697397231464 1 0.13773512840271 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BCAS3 ENSG00000141376 CDS Human protein_coding chr17:59161840 chr17:59161841 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_37023 0 0 1 0 2 BCAS3 chr17:59161828 3'AG 59161828 Downstream 14bp
chr17 59161841 59161841 1 + C T STAD 59161840 + 59161820 59161860 41 CATTGCAGGATCCAGCCAGTCCGCTCTGACCCCGTCAGCAT CATTGCAGGATCCAGCCAGTCTGCTCTGACCCCGTCAGCAT < 41bp 1 0.489697397231464 1 0.13773512840271 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BCAS3 ENSG00000141376 CDS Human protein_coding chr17:59161840 chr17:59161841 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_37023 0 0 1 0 2 BCAS3 chr17:59161925 5'GT 59161925 Upstream 85bp
chr18 74631811 74631811 1 + G A STAD 74631822 + 74631802 74631842 41 CACTTTCACGGAGGAGGAGACAGCCCAGTTAGCCAAGATCC CACTTTCACAGAGGAGGAGACAGCCCAGTTAGCCAAGATCC < 41bp 1 0.29566892777303 1 0.279817700386047 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74631822 chr18:74631811 synonymous SNV . 0 10 hm5C_associated_SNPs_37026 0 0 1 0 1 ZNF236 chr18:74631732 3'AG 74631732 Downstream 80bp
chr8 99019731 99019731 1 + A G STAD 99019717 + 99019697 99019737 41 GGTTTTGCAGGGGTGGATTACTGCCTGCTGAGTGACCATGG GGTTTTGCAGGGGTGGATTACTGCCTGCTGAGTGGCCATGG < 41bp 1 0.617641713887239 1 0.083000510931015 experiment 0.764716572225522 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MATN2 ENSG00000132561 CDS Human protein_coding chr8:99019717 chr8:99019731 nonsynonymous SNV 0.861 0 35 hm5C_associated_SNPs_37027 0 0 0 0 2 MATN2 chr8:99019707 3'AG 99019707 Downstream 25bp
chr8 99019731 99019731 1 + A G STAD 99019717 + 99019697 99019737 41 GGTTTTGCAGGGGTGGATTACTGCCTGCTGAGTGACCATGG GGTTTTGCAGGGGTGGATTACTGCCTGCTGAGTGGCCATGG < 41bp 1 0.617641713887239 1 0.083000510931015 experiment 0.764716572225522 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MATN2 ENSG00000132561 CDS Human protein_coding chr8:99019717 chr8:99019731 nonsynonymous SNV 0.861 0 35 hm5C_associated_SNPs_37027 0 0 0 0 2 MATN2 chr8:99019829 5'GT 99019829 Upstream 99bp
chr2 73151580 73151580 1 + G A STAD 73151590 + 73151570 73151610 41 TGGGCGCCGAGCGGAAGCAGCTGGCCGGCAGTCTCAGCCTC TGGGCGCCGAACGGAAGCAGCTGGCCGGCAGTCTCAGCCTC < 41bp 1 0.591815271000329 1 0.226331233978271 experiment 0.816369457999341 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EMX1 ENSG00000135638 CDS Human protein_coding chr2:73151590 chr2:73151580 synonymous SNV 1.000 0 11 hm5C_associated_SNPs_37032 0 0 0 0 1 EMX1 chr2:73151622 5'GT 73151622 Upstream 43bp
chr2 152273371 152273371 1 + G A STAD 152273359 + 152273339 152273379 41 TCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGC TCATTAGAAATACTGTTTAACAAAGGAGAGACACATTCTGC < 41bp 1 0.288221777501662 1 0.53180330991745 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RIF1 ENSG00000080345 CDS Human protein_coding chr2:152273359 chr2:152273371 synonymous SNV . 0 33 hm5C_associated_SNPs_37033 0 0 1 0 2 RIF1 chr2:152273321 3'AG 152273321 Downstream 51bp
chr2 152273371 152273371 1 + G A STAD 152273359 + 152273339 152273379 41 TCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGC TCATTAGAAATACTGTTTAACAAAGGAGAGACACATTCTGC < 41bp 1 0.288221777501662 1 0.53180330991745 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RIF1 ENSG00000080345 CDS Human protein_coding chr2:152273359 chr2:152273371 synonymous SNV . 0 33 hm5C_associated_SNPs_37033 0 0 1 0 2 RIF1 chr2:152273415 5'GT 152273415 Upstream 45bp
chr16 74330861 74330861 1 + C T STAD 74330876 + 74330856 74330896 41 TGCTGCTCAGTGTGGTGGATCATTTCAACCGGTGAGCGAGC TGCTGTTCAGTGTGGTGGATCATTTCAACCGGTGAGCGAGC < 41bp 1 0.141850522436852 1 0.0291808843612671 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PSMD7 ENSG00000103035 CDS Human protein_coding chr16:74330876 chr16:74330861 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_37034 0 0 1 0 1 PSMD7 chr16:74330886 5'GT 74330886 Upstream 26bp
chr2 219616528 219616528 1 + A C STAD 219616527 + 219616507 219616547 41 TGACCCAGAAAATTCCTGATCAGGTAGGAGATTGGTCTTCC TGACCCAGAAAATTCCTGATCCGGTAGGAGATTGGTCTTCC < 41bp 1 0.22893749338815 1 0.177618682384491 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219616527 chr2:219616528 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_37035 0 0 1 0 1 TTLL4 chr2:219616529 5'GT 219616529 Upstream 2bp
chr1 52870494 52870494 1 + A G STAD 52870493 + 52870473 52870513 41 CAATATCTGGTGGAGAAGATCATTCGAACGCGAATCTATGA CAATATCTGGTGGAGAAGATCGTTCGAACGCGAATCTATGA < 41bp 1 0.163208936145729 1 0.124238401651382 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52870493 chr1:52870494 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_37037 0 0 1 0 1 PRPF38A chr1:52870551 5'GT 52870551 Upstream 58bp
chr11 9456521 9456521 1 + A G STAD 9456531 + 9456511 9456551 41 CAGTTGATACAGACACACTTCTGTCTGACACCAAGTATCTT CAGTTGATACGGACACACTTCTGTCTGACACCAAGTATCTT < 41bp 1 0.169850922268985 1 0.0737857222557068 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9456531 chr11:9456521 synonymous SNV . 0 11 hm5C_associated_SNPs_37038 0 0 1 0 2 IPO7 chr11:9456481 3'AG 9456481 Downstream 41bp
chr11 9456521 9456521 1 + A G STAD 9456531 + 9456511 9456551 41 CAGTTGATACAGACACACTTCTGTCTGACACCAAGTATCTT CAGTTGATACGGACACACTTCTGTCTGACACCAAGTATCTT < 41bp 1 0.169850922268985 1 0.0737857222557068 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9456531 chr11:9456521 synonymous SNV . 0 11 hm5C_associated_SNPs_37038 0 0 1 0 2 IPO7 chr11:9456578 5'GT 9456578 Upstream 58bp
chr12 113379472 113379472 1 + C T STAD 113379481 + 113379461 113379501 41 GGACCAGAGGGCCCGCCGTGCAGAGATCCTCAGTGAGATGC GGACCAGAGGGTCCGCCGTGCAGAGATCCTCAGTGAGATGC < 41bp 1 0.578217394711029 1 0.233223915100098 experiment 0.843565210577942 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OAS3 ENSG00000111331 CDS Human protein_coding chr12:113379481 chr12:113379472 nonsynonymous SNV 0.002 0 12 hm5C_associated_SNPs_37039 0 0 1 0 1 OAS3 chr12:113379375 3'AG 113379375 Downstream 98bp
chr2 217364716 217364716 1 + C A STAD 217364705 + 217364685 217364725 41 GACGAGCTGTGGGGATCTGGCACTGTGGTTCCTGCATGAAG GACGAGCTGTGGGGATCTGGCACTGTGGTTCATGCATGAAG < 41bp 1 0.702661112970851 1 0.168196350336075 experiment 0.594677774058298 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364705 chr2:217364716 synonymous SNV . 0 32 hm5C_associated_SNPs_37040 0 0 1 0 2 RPL37A chr2:217364672 3'AG 217364672 Downstream 45bp
chr2 217364716 217364716 1 + C A STAD 217364705 + 217364685 217364725 41 GACGAGCTGTGGGGATCTGGCACTGTGGTTCCTGCATGAAG GACGAGCTGTGGGGATCTGGCACTGTGGTTCATGCATGAAG < 41bp 1 0.702661112970851 1 0.168196350336075 experiment 0.594677774058298 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364705 chr2:217364716 synonymous SNV . 0 32 hm5C_associated_SNPs_37040 0 0 1 0 2 RPL37A chr2:217364754 5'GT 217364754 Upstream 39bp
chr2 217364716 217364716 1 + C A STAD 217364733 + 217364713 217364753 41 TTCCTGCATGAAGACAGTGGCTGGCGGTGCCTGGACGTACA TTCATGCATGAAGACAGTGGCTGGCGGTGCCTGGACGTACA < 41bp 1 0.729223023625801 1 0.243797272443771 experiment 0.541553952748397 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364733 chr2:217364716 synonymous SNV . 0 4 hm5C_associated_SNPs_37041 0 0 1 0 2 RPL37A chr2:217364672 3'AG 217364672 Downstream 45bp
chr2 217364716 217364716 1 + C A STAD 217364733 + 217364713 217364753 41 TTCCTGCATGAAGACAGTGGCTGGCGGTGCCTGGACGTACA TTCATGCATGAAGACAGTGGCTGGCGGTGCCTGGACGTACA < 41bp 1 0.729223023625801 1 0.243797272443771 experiment 0.541553952748397 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364733 chr2:217364716 synonymous SNV . 0 4 hm5C_associated_SNPs_37041 0 0 1 0 2 RPL37A chr2:217364754 5'GT 217364754 Upstream 39bp
chr16 22271788 22271788 1 + C T STAD 22271796 + 22271776 22271816 41 TGCCCAGATTGGCCAGTGTTCAGTGACCTCGATAACATGGC TGCCCAGATTGGTCAGTGTTCAGTGACCTCGATAACATGGC < 41bp 1 0.330911833283654 1 0.617003500461578 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EEF2K ENSG00000103319 CDS Human protein_coding chr16:22271796 chr16:22271788 nonsynonymous SNV 0.987 1 13 hm5C_associated_SNPs_37045 0 0 1 2 2 EEF2K chr16:22271783 3'AG 22271783 Downstream 6bp
chr16 22271788 22271788 1 + C T STAD 22271796 + 22271776 22271816 41 TGCCCAGATTGGCCAGTGTTCAGTGACCTCGATAACATGGC TGCCCAGATTGGTCAGTGTTCAGTGACCTCGATAACATGGC < 41bp 1 0.330911833283654 1 0.617003500461578 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EEF2K ENSG00000103319 CDS Human protein_coding chr16:22271796 chr16:22271788 nonsynonymous SNV 0.987 1 13 hm5C_associated_SNPs_37045 0 0 1 2 2 EEF2K chr16:22271850 5'GT 22271850 Upstream 63bp
chr16 57486772 57486772 1 + A G STAD 57486774 + 57486754 57486794 41 GTGAGGAGCAGTTGCAGCACCGCATCCTGACGGCAGCCCTT GTGAGGAGCAGTTGCAGCGCCGCATCCTGACGGCAGCCCTT < 41bp 1 0.564958284312757 1 0.730299353599548 experiment 0.870083431374487 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57486774 chr16:57486772 nonsynonymous SNV 0.974 0 19 hm5C_associated_SNPs_37046 0 0 1 0 2 COQ9 chr16:57486713 3'AG 57486713 Downstream 60bp
chr16 57486772 57486772 1 + A G STAD 57486774 + 57486754 57486794 41 GTGAGGAGCAGTTGCAGCACCGCATCCTGACGGCAGCCCTT GTGAGGAGCAGTTGCAGCGCCGCATCCTGACGGCAGCCCTT < 41bp 1 0.564958284312757 1 0.730299353599548 experiment 0.870083431374487 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57486774 chr16:57486772 nonsynonymous SNV 0.974 0 19 hm5C_associated_SNPs_37046 0 0 1 0 2 COQ9 chr16:57486848 5'GT 57486848 Upstream 77bp
chr3 129197018 129197018 1 + G A STAD 129197026 + 129197006 129197046 41 AGAAGTTTGAGTGCAACCTCCTGGTGGTGTGTGCCAATCAC AGAAGTTTGAGTACAACCTCCTGGTGGTGTGTGCCAATCAC < 41bp 1 0.601713678895449 1 0.218000203371048 experiment 0.796572642209102 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFT122 ENSG00000163913 CDS Human protein_coding chr3:129197026 chr3:129197018 nonsynonymous SNV 0.998 4 13 hm5C_associated_SNPs_37047 0 0 1 1 1 IFT122 chr3:129197061 5'GT 129197061 Upstream 44bp
chr10 81841641 81841641 1 + G A STAD 81841623 + 81841603 81841643 41 GTCTTCTGGCCTCAGAGTATCCCTTATCAGAACCTTGGGCC GTCTTCTGGCCTCAGAGTATCCCTTATCAGAACCTTGGACC < 41bp 1 0.294358058153306 1 0.0242936015129089 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM254 ENSG00000133678 CDS Human protein_coding chr10:81841623 chr10:81841641 synonymous SNV 0.601 1 39 hm5C_associated_SNPs_37048 0 0 1 0 2 TMEM254 chr10:81841597 3'AG 81841597 Downstream 45bp
chr10 81841641 81841641 1 + G A STAD 81841623 + 81841603 81841643 41 GTCTTCTGGCCTCAGAGTATCCCTTATCAGAACCTTGGGCC GTCTTCTGGCCTCAGAGTATCCCTTATCAGAACCTTGGACC < 41bp 1 0.294358058153306 1 0.0242936015129089 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM254 ENSG00000133678 CDS Human protein_coding chr10:81841623 chr10:81841641 synonymous SNV 0.601 1 39 hm5C_associated_SNPs_37048 0 0 1 0 2 TMEM254 chr10:81841700 5'GT 81841700 Upstream 60bp
chr19 13054412 13054412 1 + A G STAD 13054404 + 13054384 13054424 41 ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA ATCACCAACGATGAGGCATACGCTGAGGGGTTTGGCAACGA < 41bp 1 0.62981161446094 1 0.175479799509048 experiment 0.740376771078119 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054404 chr19:13054412 nonsynonymous SNV 0.948 2 29 hm5C_associated_SNPs_37050 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 62bp
chr19 13054412 13054412 1 + A G STAD 13054404 + 13054384 13054424 41 ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA ATCACCAACGATGAGGCATACGCTGAGGGGTTTGGCAACGA < 41bp 1 0.62981161446094 1 0.175479799509048 experiment 0.740376771078119 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054404 chr19:13054412 nonsynonymous SNV 0.948 2 29 hm5C_associated_SNPs_37050 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 32bp
chr19 13054412 13054412 1 + A G STAD 13054406 + 13054386 13054426 41 CACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGAGA CACCAACGATGAGGCATACGCTGAGGGGTTTGGCAACGAGA < 41bp 1 0.724376764445992 1 0.346258342266083 experiment 0.551246471108015 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054406 chr19:13054412 nonsynonymous SNV 0.948 2 27 hm5C_associated_SNPs_37051 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 62bp
chr19 13054412 13054412 1 + A G STAD 13054406 + 13054386 13054426 41 CACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGAGA CACCAACGATGAGGCATACGCTGAGGGGTTTGGCAACGAGA < 41bp 1 0.724376764445992 1 0.346258342266083 experiment 0.551246471108015 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054406 chr19:13054412 nonsynonymous SNV 0.948 2 27 hm5C_associated_SNPs_37051 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 32bp
chr19 13054412 13054412 1 + A G STAD 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTGAGGGGTTTGGCAACGAGACGTGGGGCGTAAC < 41bp 1 0.693804095476867 1 0.85487961769104 experiment 0.612391809046267 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054412 nonsynonymous SNV 0.948 2 14 hm5C_associated_SNPs_37052 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 62bp
chr19 13054412 13054412 1 + A G STAD 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTGAGGGGTTTGGCAACGAGACGTGGGGCGTAAC < 41bp 1 0.693804095476867 1 0.85487961769104 experiment 0.612391809046267 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054412 nonsynonymous SNV 0.948 2 14 hm5C_associated_SNPs_37052 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 32bp
chr19 13054412 13054412 1 + A G STAD 13054427 + 13054407 13054447 41 TGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA TGAGGGGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA < 41bp 1 0.697585366724662 1 0.466041207313538 experiment 0.604829266550676 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054427 chr19:13054412 nonsynonymous SNV 0.948 2 6 hm5C_associated_SNPs_37053 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 62bp
chr19 13054412 13054412 1 + A G STAD 13054427 + 13054407 13054447 41 TGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA TGAGGGGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA < 41bp 1 0.697585366724662 1 0.466041207313538 experiment 0.604829266550676 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054427 chr19:13054412 nonsynonymous SNV 0.948 2 6 hm5C_associated_SNPs_37053 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 32bp
chr6 96976501 96976501 1 + A G STAD 96976482 + 96976462 96976502 41 GCTCGACATAAAGCACGTATCCGTGGACTATTCAGTGCTAT GCTCGACATAAAGCACGTATCCGTGGACTATTCAGTGCTGT < 41bp 1 0.418287265699688 1 0.418779671192169 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UFL1 ENSG00000014123 CDS Human protein_coding chr6:96976482 chr6:96976501 nonsynonymous SNV 0.950 0 40 hm5C_associated_SNPs_37058 0 0 1 0 1 UFL1 chr6:96976508 5'GT 96976508 Upstream 8bp
chr6 96976501 96976501 1 + A G STAD 96976507 + 96976487 96976527 41 GACTATTCAGTGCTATTACCCGGTAAGTATATTTTAAAGTA GACTATTCAGTGCTGTTACCCGGTAAGTATATTTTAAAGTA < 41bp 1 0.654026484719613 1 0.346059799194336 experiment 0.691947030560774 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UFL1 ENSG00000014123 CDS Human protein_coding chr6:96976507 chr6:96976501 nonsynonymous SNV 0.950 0 15 hm5C_associated_SNPs_37059 0 0 1 0 1 UFL1 chr6:96976508 5'GT 96976508 Upstream 8bp
chr5 145613207 145613207 1 + C T STAD 145613189 + 145613169 145613209 41 TGCCAGGTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGCCCA TGCCAGGTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGCTCA < 41bp 1 0.775494004487954 1 0.526531577110291 experiment 0.449011991024093 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM27 ENSG00000091009 CDS Human protein_coding chr5:145613189 chr5:145613207 nonsynonymous SNV 0.158 2 39 hm5C_associated_SNPs_37060 0 0 0 0 1 RBM27 chr5:145613306 5'GT 145613306 Upstream 100bp
chr5 145613207 145613207 1 + C T STAD 145613190 + 145613170 145613210 41 GCCAGGTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGCCCAG GCCAGGTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGCTCAG < 41bp 1 0.708330597405315 1 0.881226420402527 experiment 0.58333880518937 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM27 ENSG00000091009 CDS Human protein_coding chr5:145613190 chr5:145613207 nonsynonymous SNV 0.158 2 38 hm5C_associated_SNPs_37061 0 0 0 0 1 RBM27 chr5:145613306 5'GT 145613306 Upstream 100bp
chr5 145613207 145613207 1 + C T STAD 145613194 + 145613174 145613214 41 GGTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGCCCAGGCCC GGTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGCTCAGGCCC < 41bp 1 0.661756894511731 1 0.176046937704086 experiment 0.676486210976538 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RBM27 ENSG00000091009 CDS Human protein_coding chr5:145613194 chr5:145613207 nonsynonymous SNV 0.158 2 34 hm5C_associated_SNPs_37062 0 0 0 0 1 RBM27 chr5:145613306 5'GT 145613306 Upstream 100bp
chr5 145613207 145613207 1 + C T STAD 145613195 + 145613175 145613215 41 GTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGCCCAGGCCCG GTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGCTCAGGCCCG < 41bp 1 0.659865552769643 1 0.242183119058609 experiment 0.680268894460715 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM27 ENSG00000091009 CDS Human protein_coding chr5:145613195 chr5:145613207 nonsynonymous SNV 0.158 2 33 hm5C_associated_SNPs_37063 0 0 0 0 1 RBM27 chr5:145613306 5'GT 145613306 Upstream 100bp
chr5 145613207 145613207 1 + C T STAD 145613213 + 145613193 145613233 41 GCCCAGGTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGTCCT GCCCAGGTCCAGGCTCAGGCCCGGGCCCAGGTCCAGGTCCT < 41bp 1 0.764980229826894 1 0.461802303791046 experiment 0.470039540346212 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RBM27 ENSG00000091009 CDS Human protein_coding chr5:145613213 chr5:145613207 nonsynonymous SNV 0.158 2 15 hm5C_associated_SNPs_37064 0 0 0 0 1 RBM27 chr5:145613306 5'GT 145613306 Upstream 100bp
chr5 145613207 145613207 1 + C T STAD 145613214 + 145613194 145613234 41 CCCAGGTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGTCCTG CCCAGGTCCAGGCTCAGGCCCGGGCCCAGGTCCAGGTCCTG < 41bp 1 0.652796552462008 1 0.725239872932434 experiment 0.694406895075983 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM27 ENSG00000091009 CDS Human protein_coding chr5:145613214 chr5:145613207 nonsynonymous SNV 0.158 2 14 hm5C_associated_SNPs_37065 0 0 0 0 1 RBM27 chr5:145613306 5'GT 145613306 Upstream 100bp
chrX 49093645 49093645 1 + C T STAD 49093654 + 49093634 49093674 41 GATCAACCCTGCGGTGGGCTCTGGCCTCAGCCCTCTGCTGC GATCAACCCTGTGGTGGGCTCTGGCCTCAGCCCTCTGCTGC < 41bp 1 0.778443860980685 1 0.318455994129181 experiment 0.443112278038631 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49093654 chrX:49093645 nonsynonymous SNV 0.915 1 12 hm5C_associated_SNPs_37066 0 0 1 0 2 CCDC22 chrX:49093553 3'AG 49093553 Downstream 93bp
chrX 49093645 49093645 1 + C T STAD 49093654 + 49093634 49093674 41 GATCAACCCTGCGGTGGGCTCTGGCCTCAGCCCTCTGCTGC GATCAACCCTGTGGTGGGCTCTGGCCTCAGCCCTCTGCTGC < 41bp 1 0.778443860980685 1 0.318455994129181 experiment 0.443112278038631 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49093654 chrX:49093645 nonsynonymous SNV 0.915 1 12 hm5C_associated_SNPs_37066 0 0 1 0 2 CCDC22 chrX:49093730 5'GT 49093730 Upstream 86bp
chr2 236877258 236877258 1 + A G STAD 236877245 + 236877225 236877265 41 ACTAGCAACTTCAAAGCCGACGGCCTGTCCGGCACTGCTGA ACTAGCAACTTCAAAGCCGACGGCCTGTCCGGCGCTGCTGA < 41bp 1 0.168265685942006 1 0.532856225967407 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236877245 chr2:236877258 nonsynonymous SNV 0.994 0 34 hm5C_associated_SNPs_37068 0 0 1 0 1 AGAP1 chr2:236877267 5'GT 236877267 Upstream 10bp
chr2 236877258 236877258 1 + A G STAD 236877249 + 236877229 236877269 41 GCAACTTCAAAGCCGACGGCCTGTCCGGCACTGCTGAAGGT GCAACTTCAAAGCCGACGGCCTGTCCGGCGCTGCTGAAGGT < 41bp 1 0.0401066231740038 1 0.0978343486785889 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236877249 chr2:236877258 nonsynonymous SNV 0.994 0 30 hm5C_associated_SNPs_37069 0 0 1 0 1 AGAP1 chr2:236877267 5'GT 236877267 Upstream 10bp
chr9 135942495 135942495 1 + C T STAD 135942479 + 135942459 135942499 41 TTGGTTCTGCCCCCAGGTGGCTGAGAAGGTGGGTTGCCCTG TTGGTTCTGCCCCCAGGTGGCTGAGAAGGTGGGTTGTCCTG < 41bp 1 0.501928433262387 1 0.220997393131256 experiment 0.996143133475226 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942479 chr9:135942495 synonymous SNV . 0 37 hm5C_associated_SNPs_37070 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 21bp
chr9 135942495 135942495 1 + C T STAD 135942496 + 135942476 135942516 41 TGGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGG TGGCTGAGAAGGTGGGTTGTCCTGTGGGTGATGCCGCCAGG < 41bp 1 0.273677743235752 1 0.296988636255264 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942496 chr9:135942495 synonymous SNV . 0 20 hm5C_associated_SNPs_37071 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 21bp
chr9 135942495 135942495 1 + C T STAD 135942497 + 135942477 135942517 41 GGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGGA GGCTGAGAAGGTGGGTTGTCCTGTGGGTGATGCCGCCAGGA < 41bp 1 0.560199328924549 1 0.78011429309845 experiment 0.879601342150901 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942497 chr9:135942495 synonymous SNV . 0 19 hm5C_associated_SNPs_37072 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 21bp
chr9 135942495 135942495 1 + C T STAD 135942509 + 135942489 135942529 41 GGGTTGCCCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTC GGGTTGTCCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTC < 41bp 1 0.184388806450164 1 0.135827720165253 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942509 chr9:135942495 synonymous SNV . 0 7 hm5C_associated_SNPs_37073 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 21bp
chr9 135942495 135942495 1 + C T STAD 135942512 + 135942492 135942532 41 TTGCCCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTCTGA TTGTCCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTCTGA < 41bp 1 0.468851972681602 1 0.466135501861572 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942512 chr9:135942495 synonymous SNV . 0 4 hm5C_associated_SNPs_37074 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 21bp
chr3 179424791 179424791 1 + G A STAD 179424778 + 179424758 179424798 41 TCTCCATACAGAAAGCAGGACCCAGACACGTGGGAAAATGA TCTCCATACAGAAAGCAGGACCCAGACACGTGGAAAAATGA < 41bp 1 0.0444499651464382 1 0.0755840241909027 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USP13 ENSG00000058056 CDS Human protein_coding chr3:179424778 chr3:179424791 nonsynonymous SNV 0.963 2 34 hm5C_associated_SNPs_37075 0 0 0 0 2 USP13 chr3:179424722 3'AG 179424722 Downstream 70bp
chr3 179424791 179424791 1 + G A STAD 179424778 + 179424758 179424798 41 TCTCCATACAGAAAGCAGGACCCAGACACGTGGGAAAATGA TCTCCATACAGAAAGCAGGACCCAGACACGTGGAAAAATGA < 41bp 1 0.0444499651464382 1 0.0755840241909027 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USP13 ENSG00000058056 CDS Human protein_coding chr3:179424778 chr3:179424791 nonsynonymous SNV 0.963 2 34 hm5C_associated_SNPs_37075 0 0 0 0 2 USP13 chr3:179424864 5'GT 179424864 Upstream 74bp
chr7 142458458 142458458 1 + G T STAD 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGTTGGGGGCTACAACTGTGATGAGAATTC < 41bp 1 0.358898543541533 1 0.362715363502502 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458458 nonsynonymous SNV 0.012 1 33 hm5C_associated_SNPs_37078 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 53bp
chr7 142458458 142458458 1 + G T STAD 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGTTGGGGGCTACAACTGTGATGAGAATTCTGT < 41bp 1 0.158972420722885 1 0.205683827400208 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458458 nonsynonymous SNV 0.012 1 30 hm5C_associated_SNPs_37079 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 53bp
chr7 142458458 142458458 1 + G T STAD 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGCTACAACTGTGATGAGAATTCTGTCCC < 41bp 1 0.470071031039627 1 0.370504945516586 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458458 nonsynonymous SNV 0.012 1 27 hm5C_associated_SNPs_37080 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 53bp
chr7 142458458 142458458 1 + G T STAD 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGATGAGAATTCTGTCCCCTACCAGGTGTCCC < 41bp 1 0.124783428157239 1 0.146887421607971 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458458 nonsynonymous SNV 0.012 1 13 hm5C_associated_SNPs_37081 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 53bp
chr7 142458458 142458458 1 + G T STAD 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGATGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA < 41bp 1 0.110738371617884 1 0.106268376111984 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458458 nonsynonymous SNV 0.012 1 9 hm5C_associated_SNPs_37082 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 53bp
chr7 142458458 142458458 1 + G T STAD 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGATGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT < 41bp 1 0.0978954733781484 1 0.0684765875339508 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458458 nonsynonymous SNV 0.012 1 8 hm5C_associated_SNPs_37083 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 53bp
chr7 142458458 142458458 1 + G T STAD 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGATGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT < 41bp 1 0.0127733661051499 1 0.0828461647033691 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458458 nonsynonymous SNV 0.012 1 7 hm5C_associated_SNPs_37084 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 53bp
chr7 142458458 142458458 1 + G T STAD 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGATGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC < 41bp 1 0.137281464757947 1 0.0524804890155792 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458458 nonsynonymous SNV 0.012 1 6 hm5C_associated_SNPs_37085 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 53bp
chr7 142458458 142458458 1 + G T STAD 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GATGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG < 41bp 1 0.25177536614935 1 0.302619934082031 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458458 nonsynonymous SNV 0.012 1 3 hm5C_associated_SNPs_37086 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 53bp
chr7 142458458 142458458 1 + G T STAD 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC ATGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC < 41bp 1 0.622613391667868 1 0.837264537811279 experiment 0.754773216664265 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458458 nonsynonymous SNV 0.012 1 2 hm5C_associated_SNPs_37087 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 53bp
chr12 56862392 56862392 1 + C A STAD 56862382 + 56862362 56862402 41 ATCCAAGGCGCAAGATGGCGCTGCTTTTTGCACGTTCTTTG ATCCAAGGCGCAAGATGGCGCTGCTTTTTGAACGTTCTTTG < 41bp 1 0.55713180899732 1 0.0738604962825775 experiment 0.88573638200536 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPRYD4 ENSG00000176422 CDS Human protein_coding chr12:56862382 chr12:56862392 nonsynonymous SNV 0.228 1 31 hm5C_associated_SNPs_37088 0 0 1 0 1 SPRYD4 chr12:56862460 5'GT 56862460 Upstream 69bp
chr7 116165076 116165076 1 + A T STAD 116165070 + 116165050 116165090 41 TCCTCAGTTCCCTTAAAGCACAGCCCAGGGAAACCTCCTCA TCCTCAGTTCCCTTAAAGCACAGCCCTGGGAAACCTCCTCA < 41bp 1 0.212111269851079 1 0.025777131319046 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CAV1 ENSG00000105974 UTR5 Human protein_coding chr7:116165070 chr7:116165076 . . 0 27 hm5C_associated_SNPs_37090 0 0 0 0 1 CAV1 chr7:116165146 5'GT 116165146 Upstream 71bp
chr7 116165076 116165076 1 + A T STAD 116165075 + 116165055 116165095 41 AGTTCCCTTAAAGCACAGCCCAGGGAAACCTCCTCACAGTT AGTTCCCTTAAAGCACAGCCCTGGGAAACCTCCTCACAGTT < 41bp 1 0.510920507499848 1 0.78584098815918 experiment 0.978158985000304 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CAV1 ENSG00000105974 UTR5 Human protein_coding chr7:116165075 chr7:116165076 . . 0 22 hm5C_associated_SNPs_37091 0 0 0 0 1 CAV1 chr7:116165146 5'GT 116165146 Upstream 71bp
chr20 1902326 1902326 1 + G A STAD 1902319 + 1902299 1902339 41 ACGTCACCTTGCAGGGGGACCCTCTTCGTGGGACTGCCAAC ACGTCACCTTGCAGGGGGACCCTCTTCATGGGACTGCCAAC < 41bp 1 0.0613196008334651 1 0.0154024660587311 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1902319 chr20:1902326 nonsynonymous SNV 0.937 1 28 hm5C_associated_SNPs_37093 0 0 0 0 1 SIRPA chr20:1902358 5'GT 1902358 Upstream 33bp
chr17 60769610 60769610 1 + C T STAD 60769607 + 60769587 60769627 41 GGCAGCGCTTCCAGAGAACCCAGCGGCCCTGGTGGTGGTGC GGCAGCGCTTCCAGAGAACCCAGTGGCCCTGGTGGTGGTGC < 41bp 1 0.464564092619115 1 0.418288171291351 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60769607 chr17:60769610 nonsynonymous SNV 0.653 0 24 hm5C_associated_SNPs_37094 0 0 0 0 1 MRC2 chr17:60769592 3'AG 60769592 Downstream 19bp
chr6 44219805 44219805 1 + T C STAD 44219794 + 44219774 44219814 41 GAGCGAGTGCGGAAACGGGGCTTCGAGGTGGTATATATGAC GAGCGAGTGCGGAAACGGGGCTTCGAGGTGGCATATATGAC < 41bp 1 0.194215933267944 1 0.274162858724594 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219794 chr6:44219805 nonsynonymous SNV 0.996 1 32 hm5C_associated_SNPs_37095 0 0 1 0 1 HSP90AB1 chr6:44219736 3'AG 44219736 Downstream 70bp
chr6 44219805 44219805 1 + T C STAD 44219814 + 44219794 44219834 41 CTTCGAGGTGGTATATATGACCGAGCCCATTGACGAGTACT CTTCGAGGTGGCATATATGACCGAGCCCATTGACGAGTACT < 41bp 1 0.394788560748707 1 0.198191612958908 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219814 chr6:44219805 nonsynonymous SNV 0.996 1 12 hm5C_associated_SNPs_37096 0 0 1 0 1 HSP90AB1 chr6:44219736 3'AG 44219736 Downstream 70bp
chr2 85770889 85770889 1 + A G STAD 85770875 + 85770855 85770895 41 ACAGCTTCCCATGGGAAGTGCCCAAAAAGCTTAAATATTGA ACAGCTTCCCATGGGAAGTGCCCAAAAAGCTTAAGTATTGA < 41bp 1 0.210300370553231 1 0.2429538667202 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAT2A ENSG00000168906 CDS Human protein_coding chr2:85770875 chr2:85770889 synonymous SNV . 0 35 hm5C_associated_SNPs_37097 0 0 1 0 1 MAT2A chr2:85770793 3'AG 85770793 Downstream 97bp
chr13 22246320 22246320 1 + G T STAD 22246318 + 22246298 22246338 41 CAGGGAACCAGGAAAGACCACAGCCGATTTGGTAGGTATAC CAGGGAACCAGGAAAGACCACATCCGATTTGGTAGGTATAC < 41bp 1 0.125691353469799 1 0.0758495628833771 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGF9 ENSG00000102678 CDS Human protein_coding chr13:22246318 chr13:22246320 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_37099 0 0 0 0 1 FGF9 chr13:22246328 5'GT 22246328 Upstream 9bp
chr12 53433109 53433109 1 + A G STAD 53433101 + 53433081 53433121 41 GGTCCAGGCGACGGAGGGAACAGAGACCACTGGAAGGAGTC GGTCCAGGCGACGGAGGGAACAGAGACCGCTGGAAGGAGTC < 41bp 1 0.74070809179933 1 0.626318752765656 experiment 0.518583816401339 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53433101 chr12:53433109 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_37101 0 0 1 0 2 EIF4B chr12:53433022 3'AG 53433022 Downstream 88bp
chr12 53433109 53433109 1 + A G STAD 53433101 + 53433081 53433121 41 GGTCCAGGCGACGGAGGGAACAGAGACCACTGGAAGGAGTC GGTCCAGGCGACGGAGGGAACAGAGACCGCTGGAAGGAGTC < 41bp 1 0.74070809179933 1 0.626318752765656 experiment 0.518583816401339 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53433101 chr12:53433109 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_37101 0 0 1 0 2 EIF4B chr12:53433127 5'GT 53433127 Upstream 19bp
chr12 53433109 53433109 1 + A G STAD 53433121 + 53433101 53433141 41 CAGAGACCACTGGAAGGAGTCAGATAGGTATGCTTGTTCTC CAGAGACCGCTGGAAGGAGTCAGATAGGTATGCTTGTTCTC < 41bp 1 0.578540695045111 1 0.788370370864868 experiment 0.842918609909778 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53433121 chr12:53433109 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_37102 0 0 1 0 2 EIF4B chr12:53433022 3'AG 53433022 Downstream 88bp
chr12 53433109 53433109 1 + A G STAD 53433121 + 53433101 53433141 41 CAGAGACCACTGGAAGGAGTCAGATAGGTATGCTTGTTCTC CAGAGACCGCTGGAAGGAGTCAGATAGGTATGCTTGTTCTC < 41bp 1 0.578540695045111 1 0.788370370864868 experiment 0.842918609909778 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53433121 chr12:53433109 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_37102 0 0 1 0 2 EIF4B chr12:53433127 5'GT 53433127 Upstream 19bp
chr10 71128383 71128383 1 + G A STAD 71128375 + 71128355 71128395 41 AAACTGCTTAACAAAGCCATCAAAAAGCGAGGGGTAATTTC AAACTGCTTAACAAAGCCATCAAAAAGCAAGGGGTAATTTC < 41bp 1 0.454053382364892 1 0.422480285167694 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HK1 ENSG00000156515 CDS Human protein_coding chr10:71128375 chr10:71128383 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_37109 0 0 1 0 2 HK1 chr10:71128292 3'AG 71128292 Downstream 92bp
chr10 71128383 71128383 1 + G A STAD 71128375 + 71128355 71128395 41 AAACTGCTTAACAAAGCCATCAAAAAGCGAGGGGTAATTTC AAACTGCTTAACAAAGCCATCAAAAAGCAAGGGGTAATTTC < 41bp 1 0.454053382364892 1 0.422480285167694 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HK1 ENSG00000156515 CDS Human protein_coding chr10:71128375 chr10:71128383 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_37109 0 0 1 0 2 HK1 chr10:71128387 5'GT 71128387 Upstream 5bp
chr19 50912103 50912103 1 + G T STAD 50912092 + 50912072 50912112 41 CTTCTCCTCGCTGTACCCGTCCATCATGATGGCCCACAACC CTTCTCCTCGCTGTACCCGTCCATCATGATGTCCCACAACC < 41bp 1 0.0259747551941437 1 0.0343663692474365 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912092 chr19:50912103 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_37110 0 0 1 0 2 POLD1 chr19:50912042 3'AG 50912042 Downstream 62bp
chr19 50912103 50912103 1 + G T STAD 50912092 + 50912072 50912112 41 CTTCTCCTCGCTGTACCCGTCCATCATGATGGCCCACAACC CTTCTCCTCGCTGTACCCGTCCATCATGATGTCCCACAACC < 41bp 1 0.0259747551941437 1 0.0343663692474365 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912092 chr19:50912103 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_37110 0 0 1 0 2 POLD1 chr19:50912158 5'GT 50912158 Upstream 56bp
chr19 35741260 35741260 1 + A G STAD 35741270 + 35741250 35741290 41 AACCCCTACCACGTGGTGATCCTCTTCCAGCCTGTGACCCT AACCCCTACCGCGTGGTGATCCTCTTCCAGCCTGTGACCCT < 41bp 1 0.106273437295245 1 0.0199342966079712 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35741270 chr19:35741260 nonsynonymous SNV 0.906 0 11 hm5C_associated_SNPs_37111 0 0 1 0 2 LSR chr19:35741218 3'AG 35741218 Downstream 43bp
chr19 35741260 35741260 1 + A G STAD 35741270 + 35741250 35741290 41 AACCCCTACCACGTGGTGATCCTCTTCCAGCCTGTGACCCT AACCCCTACCGCGTGGTGATCCTCTTCCAGCCTGTGACCCT < 41bp 1 0.106273437295245 1 0.0199342966079712 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35741270 chr19:35741260 nonsynonymous SNV 0.906 0 11 hm5C_associated_SNPs_37111 0 0 1 0 2 LSR chr19:35741228 3'AG 35741228 Downstream 33bp
chrX 7171305 7171305 1 + C T STAD 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGCATCAAGGCTGAACATCATCCTGGTGATGGCTGACGA < 41bp 1 0.269003429463427 1 0.0493785440921783 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171305 nonsynonymous SNV 0.104 5 14 hm5C_associated_SNPs_37112 0 0 1 2 1 STS chrX:7171237 3'AG 7171237 Downstream 69bp
chr12 9070318 9070318 1 + T G STAD 9070333 + 9070313 9070353 41 GGGAGTTCTAGCTCAGGGGGCAGCTCTCGGCCCCAGATAGC GGGAGGTCTAGCTCAGGGGGCAGCTCTCGGCCCCAGATAGC < 41bp 1 0.224731865817502 1 0.177383482456207 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHC1 ENSG00000111752 CDS Human protein_coding chr12:9070333 chr12:9070318 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_37113 0 0 0 0 2 PHC1 chr12:9070226 3'AG 9070226 Downstream 93bp
chr12 9070318 9070318 1 + T G STAD 9070333 + 9070313 9070353 41 GGGAGTTCTAGCTCAGGGGGCAGCTCTCGGCCCCAGATAGC GGGAGGTCTAGCTCAGGGGGCAGCTCTCGGCCCCAGATAGC < 41bp 1 0.224731865817502 1 0.177383482456207 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHC1 ENSG00000111752 CDS Human protein_coding chr12:9070333 chr12:9070318 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_37113 0 0 0 0 2 PHC1 chr12:9070387 5'GT 9070387 Upstream 70bp
chr1 44684006 44684006 1 + G A STAD 44684019 + 44683999 44684039 41 TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGATGAT TGTACTCAGAGCAGGAGTACCAGCTTTATCTCCACGATGAT < 41bp 1 0.515570946519049 1 0.293220221996307 experiment 0.968858106961902 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44684019 chr1:44684006 synonymous SNV . 0 8 hm5C_associated_SNPs_37115 0 0 1 0 1 DMAP1 chr1:44683983 3'AG 44683983 Downstream 24bp
chr3 126751404 126751404 1 + C T STAD 126751389 + 126751369 126751409 41 CTGGGCAAGGACTCACCCTCCAACAAGCTGCTCTACGCCAA CTGGGCAAGGACTCACCCTCCAACAAGCTGCTCTATGCCAA < 41bp 1 0.412942593026652 1 0.525306284427643 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126751389 chr3:126751404 synonymous SNV . 0 36 hm5C_associated_SNPs_37116 0 0 1 0 1 PLXNA1 chr3:126751442 5'GT 126751442 Upstream 39bp
chrX 48759272 48759272 1 + A G STAD 48759267 + 48759247 48759287 41 TCCTGGCTCTCCCCACATGACCCCAACTCCGTGGTTACCAA TCCTGGCTCTCCCCACATGACCCCAGCTCCGTGGTTACCAA < 41bp 1 0.736664862890338 1 0.0980669260025024 experiment 0.526670274219324 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759267 chrX:48759272 nonsynonymous SNV 0.956 0 26 hm5C_associated_SNPs_37117 0 0 1 0 2 PQBP1 chrX:48759207 3'AG 48759207 Downstream 66bp
chrX 48759272 48759272 1 + A G STAD 48759267 + 48759247 48759287 41 TCCTGGCTCTCCCCACATGACCCCAACTCCGTGGTTACCAA TCCTGGCTCTCCCCACATGACCCCAGCTCCGTGGTTACCAA < 41bp 1 0.736664862890338 1 0.0980669260025024 experiment 0.526670274219324 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759267 chrX:48759272 nonsynonymous SNV 0.956 0 26 hm5C_associated_SNPs_37117 0 0 1 0 2 PQBP1 chrX:48759319 5'GT 48759319 Upstream 48bp
chr2 27598553 27598553 1 + C T STAD 27598533 + 27598513 27598553 41 CCAGCAACTCCGAGAAGGCTCCTTCCGGGTCACCCGCATGC CCAGCAACTCCGAGAAGGCTCCTTCCGGGTCACCCGCATGT < 41bp 1 0.0508470152538005 1 0.0313926339149475 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SNX17 ENSG00000115234 CDS Human protein_coding chr2:27598533 chr2:27598553 stopgain 0.999 1 41 hm5C_associated_SNPs_37118 0 0 1 0 1 SNX17 chr2:27598576 5'GT 27598576 Upstream 24bp
chr2 27598553 27598553 1 + C T STAD 27598570 + 27598550 27598590 41 ATGCGATGCTGGCGGGTCACCTCCTCTGTGAGTCGGGTTAG ATGTGATGCTGGCGGGTCACCTCCTCTGTGAGTCGGGTTAG < 41bp 1 0.714999624980424 1 0.182935476303101 experiment 0.570000750039152 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX17 ENSG00000115234 CDS Human protein_coding chr2:27598570 chr2:27598553 stopgain 0.999 1 4 hm5C_associated_SNPs_37119 0 0 1 0 1 SNX17 chr2:27598576 5'GT 27598576 Upstream 24bp
chr6 144109947 144109947 1 + G A STAD 144109932 + 144109912 144109952 41 CAGCCTGAGACCCACAGTGGCAGAGCTACAAGCTCGAAGGA CAGCCTGAGACCCACAGTGGCAGAGCTACAAGCTCAAAGGA < 41bp 1 0.413135713391779 1 0.61065936088562 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHACTR2 ENSG00000112419 CDS Human protein_coding chr6:144109932 chr6:144109947 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_37120 0 0 1 0 1 PHACTR2 chr6:144109910 3'AG 144109910 Downstream 38bp
chr11 71209472 71209472 1 + G A STAD 71209490 + 71209470 71209510 41 GCGTACCACGCCGAGAACTACAGCCCTGAGGACAACAGGTT GCATACCACGCCGAGAACTACAGCCCTGAGGACAACAGGTT < 41bp 1 0.190696491795373 1 0.36709463596344 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71209490 chr11:71209472 synonymous SNV . 0 3 hm5C_associated_SNPs_37122 0 0 1 0 1 NADSYN1 chr11:71209398 3'AG 71209398 Downstream 75bp
chr22 42271622 42271622 1 + A G STAD 42271638 + 42271618 42271658 41 CAGAATGTCCTTCTGATGTCCCCCCCAGCCTCTGACTCAGG CAGAGTGTCCTTCTGATGTCCCCCCCAGCCTCTGACTCAGG < 41bp 1 0.0377078096286322 1 0.0432754456996918 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42271638 chr22:42271622 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_37125 0 0 1 0 1 SREBF2 chr22:42271547 3'AG 42271547 Downstream 76bp
chr12 56420729 56420729 1 + G A STAD 56420731 + 56420711 56420751 41 GAGCCTCACTCCCCTGGGGGCATCCGGCTGCCCAATGGCAA GAGCCTCACTCCCCTGGGAGCATCCGGCTGCCCAATGGCAA < 41bp 1 0.13912945729418 1 0.101568043231964 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IKZF4 ENSG00000123411 CDS Human protein_coding chr12:56420731 chr12:56420729 nonsynonymous SNV 0.995 3 19 hm5C_associated_SNPs_37126 0 0 1 0 1 IKZF4 chr12:56420825 5'GT 56420825 Upstream 97bp
chr14 23778068 23778068 1 + C T STAD 23778051 + 23778031 23778071 41 TTCACAGCTCTATACGGGGACGGGGCCCTGGAGGAGGCGCG TTCACAGCTCTATACGGGGACGGGGCCCTGGAGGAGGTGCG < 41bp 1 0.617005367618508 1 0.835199236869812 experiment 0.765989264762984 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCL2L2 ENSG00000129473 CDS Human protein_coding chr14:23778051 chr14:23778068 nonsynonymous SNV 0.996 0 38 hm5C_associated_SNPs_37128 0 0 1 0 1 BCL2L2 chr14:23778025 3'AG 23778025 Downstream 44bp
chr11 67202556 67202556 1 + G A STAD 67202549 + 67202529 67202569 41 TCTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG TCTACCTCCACTCCTGCCACCGCCGCCACCCTCGACCACCG < 41bp 1 0.742054370198005 1 0.723651885986328 experiment 0.51589125960399 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202549 chr11:67202556 synonymous SNV . 0 28 hm5C_associated_SNPs_37132 0 0 1 0 1 RPS6KB2 chr11:67202460 3'AG 67202460 Downstream 97bp
chr11 67202556 67202556 1 + G A STAD 67202551 + 67202531 67202571 41 TACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCGCC TACCTCCACTCCTGCCACCGCCGCCACCCTCGACCACCGCC < 41bp 1 0.260008724299084 1 0.495404213666916 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202551 chr11:67202556 synonymous SNV . 0 26 hm5C_associated_SNPs_37133 0 0 1 0 1 RPS6KB2 chr11:67202460 3'AG 67202460 Downstream 97bp
chr11 67202556 67202556 1 + G A STAD 67202555 + 67202535 67202575 41 TCCACTCCTGCCACCGCCGCCGCCCTCGACCACCGCCCCTC TCCACTCCTGCCACCGCCGCCACCCTCGACCACCGCCCCTC < 41bp 1 0.576315608931534 1 0.144398808479309 experiment 0.847368782136933 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202555 chr11:67202556 synonymous SNV . 0 22 hm5C_associated_SNPs_37134 0 0 1 0 1 RPS6KB2 chr11:67202460 3'AG 67202460 Downstream 97bp
chr15 40509817 40509817 1 + A G STAD 40509802 + 40509782 40509822 41 CTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGTACAGAT CTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGTGCAGAT < 41bp 1 0.388353380484363 1 0.5771843791008 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BUB1B ENSG00000156970;ENSG00000259288 CDS Human other chr15:40509802 chr15:40509817 synonymous SNV . 0 36 hm5C_associated_SNPs_37135 0 0 1 0 1 BUB1B chr15:40509868 5'GT 40509868 Upstream 52bp
chr19 54652450 54652450 1 + G A STAD 54652444 + 54652424 54652464 41 GCAGCCAGGCCTTGGGCCCCCCTTCCGGCCCCCACAACCCA GCAGCCAGGCCTTGGGCCCCCCTTCCAGCCCCCACAACCCA < 41bp 1 0.023938709912742 1 0.0366153419017792 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54652444 chr19:54652450 nonsynonymous SNV 0.353 0 27 hm5C_associated_SNPs_37136 0 0 1 0 2 CNOT3 chr19:54652355 3'AG 54652355 Downstream 96bp
chr19 54652450 54652450 1 + G A STAD 54652444 + 54652424 54652464 41 GCAGCCAGGCCTTGGGCCCCCCTTCCGGCCCCCACAACCCA GCAGCCAGGCCTTGGGCCCCCCTTCCAGCCCCCACAACCCA < 41bp 1 0.023938709912742 1 0.0366153419017792 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54652444 chr19:54652450 nonsynonymous SNV 0.353 0 27 hm5C_associated_SNPs_37136 0 0 1 0 2 CNOT3 chr19:54652478 5'GT 54652478 Upstream 29bp
chr7 101459318 101459318 1 + C A STAD 101459315 + 101459295 101459335 41 CTCAATATGTCTCAAGATGGCGGCCAATGTGGGATCGATGT CTCAATATGTCTCAAGATGGCGGACAATGTGGGATCGATGT < 41bp 1 0.0969553836904127 1 0.347391694784164 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101459315 chr7:101459318 nonsynonymous SNV 0.489 2 24 hm5C_associated_SNPs_37137 0 0 1 0 1 CUX1 chr7:101459373 5'GT 101459373 Upstream 56bp
chr20 60701461 60701461 1 + G A STAD 60701448 + 60701428 60701468 41 GGCGCCCTACGGCCCGCTGGCGGCCAGCTCCCTGCTCAGCC GGCGCCCTACGGCCCGCTGGCGGCCAGCTCCCTACTCAGCC < 41bp 1 0.645103023580306 1 0.510593771934509 experiment 0.709793952839388 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSM14B ENSG00000149657 CDS Human protein_coding chr20:60701448 chr20:60701461 synonymous SNV . 0 34 hm5C_associated_SNPs_37138 0 0 1 0 1 LSM14B chr20:60701495 5'GT 60701495 Upstream 35bp
chr15 91432760 91432760 1 + G A STAD 91432750 + 91432730 91432770 41 GGCGCTGTCCCCCACAGGTCCGCACCTGACGTCCCACCCTG GGCGCTGTCCCCCACAGGTCCGCACCTGACATCCCACCCTG < 41bp 1 0.404240137770613 1 0.127287358045578 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FES ENSG00000182511 CDS Human protein_coding chr15:91432750 chr15:91432760 nonsynonymous SNV 0.819 0 31 hm5C_associated_SNPs_37139 0 0 1 0 1 FES chr15:91432747 3'AG 91432747 Downstream 14bp
chr16 56867231 56867231 1 + C T STAD 56867224 + 56867204 56867244 41 GCAGTTGCCTTTCTTTTCCGCATGGAGCGGCTGCGCTGCCA GCAGTTGCCTTTCTTTTCCGCATGGAGTGGCTGCGCTGCCA < 41bp 1 0.470250900933248 1 0.20759254693985 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP93 ENSG00000102900 CDS Human protein_coding chr16:56867224 chr16:56867231 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_37142 0 0 1 0 1 NUP93 chr16:56867318 5'GT 56867318 Upstream 88bp
chr7 73731896 73731896 1 + T C STAD 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AAGCCCAGCGGCCCGAAGCCCCCCGGCCGTGGGGGGAAGCA < 41bp 1 0.273571220126764 1 0.09771928191185 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731896 nonsynonymous SNV 0.999 3 14 hm5C_associated_SNPs_37143 0 0 0 0 1 CLIP2 chr7:73731810 3'AG 73731810 Downstream 87bp
chr7 73731896 73731896 1 + T C STAD 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC AGCCCAGCGGCCCGAAGCCCCCCGGCCGTGGGGGGAAGCAC < 41bp 1 0.427399247414609 1 0.166781783103943 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731896 nonsynonymous SNV 0.999 3 13 hm5C_associated_SNPs_37144 0 0 0 0 1 CLIP2 chr7:73731810 3'AG 73731810 Downstream 87bp
chr7 73731896 73731896 1 + T C STAD 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT GCCCAGCGGCCCGAAGCCCCCCGGCCGTGGGGGGAAGCACT < 41bp 1 0.204403057187728 1 0.465773552656174 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731896 nonsynonymous SNV 0.999 3 12 hm5C_associated_SNPs_37145 0 0 0 0 1 CLIP2 chr7:73731810 3'AG 73731810 Downstream 87bp
chr7 73731896 73731896 1 + T C STAD 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC CCCAGCGGCCCGAAGCCCCCCGGCCGTGGGGGGAAGCACTC < 41bp 1 0.393579221638339 1 0.422031193971634 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731896 nonsynonymous SNV 0.999 3 11 hm5C_associated_SNPs_37146 0 0 0 0 1 CLIP2 chr7:73731810 3'AG 73731810 Downstream 87bp
chr5 149006701 149006701 1 + G A STAD 149006692 + 149006672 149006712 41 GCTCTCCTGAGCAGGTATGGCCCTGGGAAGCTGTACCAGGT GCTCTCCTGAGCAGGTATGGCCCTGGGAAACTGTACCAGGT < 41bp 1 0.228717587934634 1 0.557100832462311 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:149006692 chr5:149006701 synonymous SNV . 0 30 hm5C_associated_SNPs_37150 0 0 0 0 1 ARHGEF37 chr5:149006639 3'AG 149006639 Downstream 63bp
chr14 21555165 21555165 1 + C T STAD 21555174 + 21555154 21555194 41 CCCCAGAGCTCCGAGTGCAGCAGATGGTGTCCATGGGCATT CCCCAGAGCTCTGAGTGCAGCAGATGGTGTCCATGGGCATT < 41bp 1 0.271458413172933 1 0.2230124771595 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21555174 chr14:21555165 stopgain 1.000 0 12 hm5C_associated_SNPs_37151 0 0 1 0 2 ARHGEF40 chr14:21555160 3'AG 21555160 Downstream 6bp
chr14 21555165 21555165 1 + C T STAD 21555174 + 21555154 21555194 41 CCCCAGAGCTCCGAGTGCAGCAGATGGTGTCCATGGGCATT CCCCAGAGCTCTGAGTGCAGCAGATGGTGTCCATGGGCATT < 41bp 1 0.271458413172933 1 0.2230124771595 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21555174 chr14:21555165 stopgain 1.000 0 12 hm5C_associated_SNPs_37151 0 0 1 0 2 ARHGEF40 chr14:21555264 5'GT 21555264 Upstream 100bp
chr5 173380259 173380259 1 + G A STAD 173380246 + 173380226 173380266 41 CTATCAGTGCCCGCTTTGTTCAGCTGCAGCATGGAGAGATA CTATCAGTGCCCGCTTTGTTCAGCTGCAGCATGAAGAGATA < 41bp 1 0.535219467642739 1 0.45435893535614 experiment 0.929561064714522 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173380246 chr5:173380259 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_37168 0 0 1 0 1 CPEB4 chr5:173380275 5'GT 173380275 Upstream 17bp
chr10 5963495 5963495 1 + C T STAD 5963508 + 5963488 5963528 41 CGGGTGACGGAAGGGGAATTCCCTTCAAGGATACATTTGAT CGGGTGATGGAAGGGGAATTCCCTTCAAGGATACATTTGAT < 41bp 1 0.119989164743912 1 0.433421581983566 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963508 chr10:5963495 nonsynonymous SNV 0.771 5 8 hm5C_associated_SNPs_37169 0 0 1 0 2 FBXO18 chr10:5963411 3'AG 5963411 Downstream 85bp
chr10 5963495 5963495 1 + C T STAD 5963508 + 5963488 5963528 41 CGGGTGACGGAAGGGGAATTCCCTTCAAGGATACATTTGAT CGGGTGATGGAAGGGGAATTCCCTTCAAGGATACATTTGAT < 41bp 1 0.119989164743912 1 0.433421581983566 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963508 chr10:5963495 nonsynonymous SNV 0.771 5 8 hm5C_associated_SNPs_37169 0 0 1 0 2 FBXO18 chr10:5963532 5'GT 5963532 Upstream 38bp
chr10 5963495 5963495 1 + C T STAD 5963513 + 5963493 5963533 41 GACGGAAGGGGAATTCCCTTCAAGGATACATTTGATTGGGG GATGGAAGGGGAATTCCCTTCAAGGATACATTTGATTGGGG < 41bp 1 0.688932394544475 1 0.815739929676056 experiment 0.622135210911051 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963513 chr10:5963495 nonsynonymous SNV 0.771 5 3 hm5C_associated_SNPs_37170 0 0 1 0 2 FBXO18 chr10:5963411 3'AG 5963411 Downstream 85bp
chr10 5963495 5963495 1 + C T STAD 5963513 + 5963493 5963533 41 GACGGAAGGGGAATTCCCTTCAAGGATACATTTGATTGGGG GATGGAAGGGGAATTCCCTTCAAGGATACATTTGATTGGGG < 41bp 1 0.688932394544475 1 0.815739929676056 experiment 0.622135210911051 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963513 chr10:5963495 nonsynonymous SNV 0.771 5 3 hm5C_associated_SNPs_37170 0 0 1 0 2 FBXO18 chr10:5963532 5'GT 5963532 Upstream 38bp
chr16 56872944 56872944 1 + A G STAD 56872936 + 56872916 56872956 41 CTTCTTTTGGACTTGATCACCTTTTTTGACGAGTATCATAG CTTCTTTTGGACTTGATCACCTTTTTTGGCGAGTATCATAG < 41bp 1 0.0672818372091078 1 0.0278655588626862 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP93 ENSG00000102900 CDS Human protein_coding chr16:56872936 chr16:56872944 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_37173 0 0 1 0 2 NUP93 chr16:56872864 3'AG 56872864 Downstream 81bp
chr16 56872944 56872944 1 + A G STAD 56872936 + 56872916 56872956 41 CTTCTTTTGGACTTGATCACCTTTTTTGACGAGTATCATAG CTTCTTTTGGACTTGATCACCTTTTTTGGCGAGTATCATAG < 41bp 1 0.0672818372091078 1 0.0278655588626862 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP93 ENSG00000102900 CDS Human protein_coding chr16:56872936 chr16:56872944 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_37173 0 0 1 0 2 NUP93 chr16:56872981 5'GT 56872981 Upstream 38bp
chr16 56872944 56872944 1 + A G STAD 56872961 + 56872941 56872981 41 TTGACGAGTATCATAGTGGTCATATTGATAGAGCTTTTGAT TTGGCGAGTATCATAGTGGTCATATTGATAGAGCTTTTGAT < 41bp 1 0.0640009725843121 1 0.041296511888504 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP93 ENSG00000102900 CDS Human protein_coding chr16:56872961 chr16:56872944 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_37174 0 0 1 0 2 NUP93 chr16:56872864 3'AG 56872864 Downstream 81bp
chr16 56872944 56872944 1 + A G STAD 56872961 + 56872941 56872981 41 TTGACGAGTATCATAGTGGTCATATTGATAGAGCTTTTGAT TTGGCGAGTATCATAGTGGTCATATTGATAGAGCTTTTGAT < 41bp 1 0.0640009725843121 1 0.041296511888504 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP93 ENSG00000102900 CDS Human protein_coding chr16:56872961 chr16:56872944 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_37174 0 0 1 0 2 NUP93 chr16:56872981 5'GT 56872981 Upstream 38bp
chr11 10472572 10472572 1 + G A STAD 10472588 + 10472568 10472608 41 CATGGCCCTGTCGTCCGAACCCGGTGAGTGCGCGCGAGGCT CATGACCCTGTCGTCCGAACCCGGTGAGTGCGCGCGAGGCT < 41bp 1 0.623806298560783 1 0.728132605552673 experiment 0.752387402878434 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10472588 chr11:10472572 nonsynonymous SNV 0.136 0 5 hm5C_associated_SNPs_37175 0 0 0 0 1 AMPD3 chr11:10472590 5'GT 10472590 Upstream 19bp
chr17 3563924 3563924 1 + C T STAD 3563941 + 3563921 3563961 41 GCGCGCACAGGCTCTGGCAGCCGTCTCAGGCAGGACTGGGC GCGTGCACAGGCTCTGGCAGCCGTCTCAGGCAGGACTGGGC < 41bp 1 0.0984036106230823 1 0.0832481384277344 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CTNS ENSG00000040531 CDS Human protein_coding chr17:3563941 chr17:3563924 nonsynonymous SNV 0.029 1 4 hm5C_associated_SNPs_37177 0 0 0 0 1 CTNS chr17:3563911 3'AG 3563911 Downstream 14bp
chr17 3563924 3563924 1 + C T STAD 3563942 + 3563922 3563962 41 CGCGCACAGGCTCTGGCAGCCGTCTCAGGCAGGACTGGGCA CGTGCACAGGCTCTGGCAGCCGTCTCAGGCAGGACTGGGCA < 41bp 1 0.311115536295185 1 0.151660293340683 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CTNS ENSG00000040531 CDS Human protein_coding chr17:3563942 chr17:3563924 nonsynonymous SNV 0.029 1 3 hm5C_associated_SNPs_37178 0 0 0 0 1 CTNS chr17:3563911 3'AG 3563911 Downstream 14bp
chr22 44368124 44368124 1 + G A STAD 44368123 + 44368103 44368143 41 TTTTTTTATTTAGGTGATGACGCACTTCCAAATGGGTTAGA TTTTTTTATTTAGGTGATGACACACTTCCAAATGGGTTAGA < 41bp 1 0.141927546013682 1 0.119208008050919 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44368123 chr22:44368124 nonsynonymous SNV 0.903 4 22 hm5C_associated_SNPs_37179 0 0 1 0 2 SAMM50 chr22:44368116 3'AG 44368116 Downstream 9bp
chr22 44368124 44368124 1 + G A STAD 44368123 + 44368103 44368143 41 TTTTTTTATTTAGGTGATGACGCACTTCCAAATGGGTTAGA TTTTTTTATTTAGGTGATGACACACTTCCAAATGGGTTAGA < 41bp 1 0.141927546013682 1 0.119208008050919 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44368123 chr22:44368124 nonsynonymous SNV 0.903 4 22 hm5C_associated_SNPs_37179 0 0 1 0 2 SAMM50 chr22:44368222 5'GT 44368222 Upstream 99bp
chr7 99702533 99702533 1 + C T STAD 99702547 + 99702527 99702567 41 GAGATTCGGCTCAAGAGCTTCCTTCCTAGCGGCTCTGGTGA GAGATTTGGCTCAAGAGCTTCCTTCCTAGCGGCTCTGGTGA < 41bp 1 0.0199833846743956 1 0.0653040111064911 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99702547 chr7:99702533 nonsynonymous SNV 0.998 4 7 hm5C_associated_SNPs_37180 0 0 1 0 2 AP4M1 chr7:99702497 3'AG 99702497 Downstream 37bp
chr7 99702533 99702533 1 + C T STAD 99702547 + 99702527 99702567 41 GAGATTCGGCTCAAGAGCTTCCTTCCTAGCGGCTCTGGTGA GAGATTTGGCTCAAGAGCTTCCTTCCTAGCGGCTCTGGTGA < 41bp 1 0.0199833846743956 1 0.0653040111064911 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99702547 chr7:99702533 nonsynonymous SNV 0.998 4 7 hm5C_associated_SNPs_37180 0 0 1 0 2 AP4M1 chr7:99702563 5'GT 99702563 Upstream 31bp
chr12 109637357 109637357 1 + G A STAD 109637339 + 109637319 109637359 41 GGCCACGTTGAGGCTGGGAGCAGCTACGCTGAGATGGAGGT GGCCACGTTGAGGCTGGGAGCAGCTACGCTGAGATGGAAGT < 41bp 1 0.220449606871723 1 0.679406881332397 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109637339 chr12:109637357 synonymous SNV . 0 39 hm5C_associated_SNPs_37184 0 0 1 0 1 ACACB chr12:109637357 5'GT 109637357 Upstream 1bp
chr22 29695814 29695814 1 + G T STAD 29695816 + 29695796 29695836 41 TGGGAGGAAGAAGAGGAGGACGTGGAGGACCTGGAAAAATG TGGGAGGAAGAAGAGGAGTACGTGGAGGACCTGGAAAAATG < 41bp 1 0.620994237919767 1 0.479728519916534 experiment 0.758011524160466 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695816 chr22:29695814 nonsynonymous SNV 0.922 3 19 hm5C_associated_SNPs_37185 0 0 1 0 1 EWSR1 chr22:29695841 5'GT 29695841 Upstream 28bp
chr22 29695814 29695814 1 + G T STAD 29695825 + 29695805 29695845 41 GAAGAGGAGGACGTGGAGGACCTGGAAAAATGGATAAGTAA GAAGAGGAGTACGTGGAGGACCTGGAAAAATGGATAAGTAA < 41bp 1 0.307805339766442 1 0.30617293715477 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695825 chr22:29695814 nonsynonymous SNV 0.922 3 10 hm5C_associated_SNPs_37186 0 0 1 0 1 EWSR1 chr22:29695841 5'GT 29695841 Upstream 28bp
chr10 17277380 17277380 1 + G T STAD 17277369 + 17277349 17277389 41 TTGCCACCTACAGGAAGCTGCTGGAAGGCGAGGAGAGCAGG TTGCCACCTACAGGAAGCTGCTGGAAGGCGATGAGAGCAGG < 41bp 1 0.70843560793336 1 0.743827521800995 experiment 0.58312878413328 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277369 chr10:17277380 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_37187 0 0 1 1 1 VIM chr10:17277388 5'GT 17277388 Upstream 9bp
chr10 17277380 17277380 1 + G T STAD 17277386 + 17277366 17277406 41 CTGCTGGAAGGCGAGGAGAGCAGGTAGGGAACTCAGACTTG CTGCTGGAAGGCGATGAGAGCAGGTAGGGAACTCAGACTTG < 41bp 1 0.655075241129738 1 0.498897820711136 experiment 0.689849517740523 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277386 chr10:17277380 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_37188 0 0 1 1 1 VIM chr10:17277388 5'GT 17277388 Upstream 9bp
chr7 91735033 91735033 1 + C T STAD 91735017 + 91734997 91735037 41 AATTTTTGGTTCGACGGTGGCATCGAGTCACAGGTTCTGTT AATTTTTGGTTCGACGGTGGCATCGAGTCACAGGTTTTGTT < 41bp 1 0.112134264912329 1 0.399781584739685 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91735017 chr7:91735033 nonsynonymous SNV 0.994 2 37 hm5C_associated_SNPs_37189 0 0 1 0 2 AKAP9 chr7:91734992 3'AG 91734992 Downstream 42bp
chr7 91735033 91735033 1 + C T STAD 91735017 + 91734997 91735037 41 AATTTTTGGTTCGACGGTGGCATCGAGTCACAGGTTCTGTT AATTTTTGGTTCGACGGTGGCATCGAGTCACAGGTTTTGTT < 41bp 1 0.112134264912329 1 0.399781584739685 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91735017 chr7:91735033 nonsynonymous SNV 0.994 2 37 hm5C_associated_SNPs_37189 0 0 1 0 2 AKAP9 chr7:91735077 5'GT 91735077 Upstream 45bp
chr2 190320060 190320060 1 + G T STAD 190320076 + 190320056 190320096 41 GCTGGTTTCAGTGAAACTGCCAAAATCCTCAAGCCAGGAAG GCTGTTTTCAGTGAAACTGCCAAAATCCTCAAGCCAGGAAG < 41bp 1 0.622188606084088 1 0.516179323196411 experiment 0.755622787831824 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR75 ENSG00000115368 CDS Human protein_coding chr2:190320076 chr2:190320060 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_37190 0 0 1 0 1 WDR75 chr2:190320046 3'AG 190320046 Downstream 15bp
chr5 137518918 137518918 1 + G A STAD 137518909 + 137518889 137518929 41 TGCCCCACTACCTGTCCCGGCAAACATTCGCTTCTCCATCT TGCCCCACTACCTGTCCCGGCAAACATTCACTTCTCCATCT < 41bp 1 0.208881553584716 1 0.0863068103790283 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF20A ENSG00000112984 CDS Human protein_coding chr5:137518909 chr5:137518918 nonsynonymous SNV 0.989 2 30 hm5C_associated_SNPs_37192 0 0 1 0 1 KIF20A chr5:137518858 3'AG 137518858 Downstream 61bp
chr2 38908455 38908455 1 + G A STAD 38908437 + 38908417 38908457 41 TCCAGGTGCTCTGGACCCCTCGGGTGCTGTCAAATGGCGTC TCCAGGTGCTCTGGACCCCTCGGGTGCTGTCAAATGGCATC < 41bp 1 0.742996074695909 1 0.740158557891846 experiment 0.514007850608182 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control GALM ENSG00000143891 CDS Human protein_coding chr2:38908437 chr2:38908455 nonsynonymous SNV 0.846 0 39 hm5C_associated_SNPs_37193 0 0 1 0 1 GALM chr2:38908422 3'AG 38908422 Downstream 34bp
chr5 128440935 128440935 1 + G T STAD 128440946 + 128440926 128440966 41 TACCCTAAAGGTCTTGGGAGCACGGTTCAAGAAATTGATTT TACCCTAAATGTCTTGGGAGCACGGTTCAAGAAATTGATTT < 41bp 1 0.608121156839652 1 0.432610958814621 experiment 0.783757686320696 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128440946 chr5:128440935 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_37196 0 0 1 0 1 ISOC1 chr5:128440878 3'AG 128440878 Downstream 58bp
chr19 36218423 36218423 1 + G A STAD 36218408 + 36218388 36218428 41 CTGCGGACCGTGTGCTGGGGCAGCGCAGCCCCGCTGGCGAG CTGCGGACCGTGTGCTGGGGCAGCGCAGCCCCGCTAGCGAG < 41bp 1 0.55261020827024 1 0.497105568647385 experiment 0.89477958345952 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36218408 chr19:36218423 stopgain 0.998 1 36 hm5C_associated_SNPs_37198 0 0 1 0 1 KMT2B chr19:36218339 3'AG 36218339 Downstream 85bp
chr17 79412060 79412060 1 + G A STAD 79412070 + 79412050 79412090 41 TGGACCAGGCGTCACTGTGGCCCCCCATGTACGGGGGCCGG TGGACCAGGCATCACTGTGGCCCCCCATGTACGGGGGCCGG < 41bp 1 0.0357754739106317 1 0.0523914992809296 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412070 chr17:79412060 synonymous SNV . 0 11 hm5C_associated_SNPs_37199 0 0 0 0 1 BAHCC1 chr17:79412041 3'AG 79412041 Downstream 20bp
chr17 79412060 79412060 1 + G A STAD 79412071 + 79412051 79412091 41 GGACCAGGCGTCACTGTGGCCCCCCATGTACGGGGGCCGGG GGACCAGGCATCACTGTGGCCCCCCATGTACGGGGGCCGGG < 41bp 1 0.0486856372600396 1 0.0810961425304413 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412071 chr17:79412060 synonymous SNV . 0 10 hm5C_associated_SNPs_37200 0 0 0 0 1 BAHCC1 chr17:79412041 3'AG 79412041 Downstream 20bp
chr17 79412060 79412060 1 + G A STAD 79412072 + 79412052 79412092 41 GACCAGGCGTCACTGTGGCCCCCCATGTACGGGGGCCGGGG GACCAGGCATCACTGTGGCCCCCCATGTACGGGGGCCGGGG < 41bp 1 0.159522023060752 1 0.187638342380524 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412072 chr17:79412060 synonymous SNV . 0 9 hm5C_associated_SNPs_37201 0 0 0 0 1 BAHCC1 chr17:79412041 3'AG 79412041 Downstream 20bp
chr17 79412060 79412060 1 + G A STAD 79412073 + 79412053 79412093 41 ACCAGGCGTCACTGTGGCCCCCCATGTACGGGGGCCGGGGC ACCAGGCATCACTGTGGCCCCCCATGTACGGGGGCCGGGGC < 41bp 1 0.094405662569709 1 0.260782718658447 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412073 chr17:79412060 synonymous SNV . 0 8 hm5C_associated_SNPs_37202 0 0 0 0 1 BAHCC1 chr17:79412041 3'AG 79412041 Downstream 20bp
chr17 79412060 79412060 1 + G A STAD 79412074 + 79412054 79412094 41 CCAGGCGTCACTGTGGCCCCCCATGTACGGGGGCCGGGGCC CCAGGCATCACTGTGGCCCCCCATGTACGGGGGCCGGGGCC < 41bp 1 0.0602514396002403 1 0.126577287912369 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412074 chr17:79412060 synonymous SNV . 0 7 hm5C_associated_SNPs_37203 0 0 0 0 1 BAHCC1 chr17:79412041 3'AG 79412041 Downstream 20bp
chr11 812818 812818 1 + A C STAD 812802 + 812782 812822 41 GAAGGAGGAGTCTGAAGAGTCAGATGATGACATGGGATTTG GAAGGAGGAGTCTGAAGAGTCAGATGATGACATGGGCTTTG < 41bp 1 0.65236700746676 1 0.779668927192688 experiment 0.69526598506648 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPLP2 ENSG00000177600 CDS Human protein_coding chr11:812802 chr11:812818 synonymous SNV . 0 37 hm5C_associated_SNPs_37204 0 0 1 0 1 RPLP2 chr11:812760 3'AG 812760 Downstream 59bp
chr3 184042671 184042671 1 + G A STAD 184042675 + 184042655 184042695 41 GTGAATGGCAGGCAGAGGAACGAGGACGCCTGAAGGAAGAG GTGAATGGCAGGCAGAAGAACGAGGACGCCTGAAGGAAGAG < 41bp 1 0.642136243707971 1 0.623009085655212 experiment 0.715727512584059 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042675 chr3:184042671 synonymous SNV . 0 17 hm5C_associated_SNPs_37207 0 0 1 0 1 EIF4G1 chr3:184042666 3'AG 184042666 Downstream 6bp
chr3 184042671 184042671 1 + G A STAD 184042681 + 184042661 184042701 41 GGCAGGCAGAGGAACGAGGACGCCTGAAGGAAGAGCTGGAA GGCAGGCAGAAGAACGAGGACGCCTGAAGGAAGAGCTGGAA < 41bp 1 0.46734099073013 1 0.55550354719162 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042681 chr3:184042671 synonymous SNV . 0 11 hm5C_associated_SNPs_37208 0 0 1 0 1 EIF4G1 chr3:184042666 3'AG 184042666 Downstream 6bp
chr3 184042671 184042671 1 + G A STAD 184042684 + 184042664 184042704 41 AGGCAGAGGAACGAGGACGCCTGAAGGAAGAGCTGGAAGAG AGGCAGAAGAACGAGGACGCCTGAAGGAAGAGCTGGAAGAG < 41bp 1 0.765862655781723 1 0.659600496292114 experiment 0.468274688436555 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042684 chr3:184042671 synonymous SNV . 0 8 hm5C_associated_SNPs_37209 0 0 1 0 1 EIF4G1 chr3:184042666 3'AG 184042666 Downstream 6bp
chr2 32958960 32958960 1 + C A STAD 32958943 + 32958923 32958963 41 CTACATCTGTATTGGAACGCCTGAAGATTTTCTATTGCTGT CTACATCTGTATTGGAACGCCTGAAGATTTTCTATTGATGT < 41bp 1 0.537904805047645 1 0.457980573177338 experiment 0.92419038990471 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32958943 chr2:32958960 stopgain 0.995 1 38 hm5C_associated_SNPs_37210 0 0 1 0 2 TTC27 chr2:32958895 3'AG 32958895 Downstream 66bp
chr2 32958960 32958960 1 + C A STAD 32958943 + 32958923 32958963 41 CTACATCTGTATTGGAACGCCTGAAGATTTTCTATTGCTGT CTACATCTGTATTGGAACGCCTGAAGATTTTCTATTGATGT < 41bp 1 0.537904805047645 1 0.457980573177338 experiment 0.92419038990471 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32958943 chr2:32958960 stopgain 0.995 1 38 hm5C_associated_SNPs_37210 0 0 1 0 2 TTC27 chr2:32958990 5'GT 32958990 Upstream 31bp
chr7 87530094 87530094 1 + C T STAD 87530114 + 87530094 87530134 41 CGATAAGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAG TGATAAGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAG < 41bp 1 0.158421777636615 1 0.324806183576584 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530114 chr7:87530094 synonymous SNV . 0 1 hm5C_associated_SNPs_37211 0 0 1 0 2 DBF4 chr7:87530079 3'AG 87530079 Downstream 16bp
chr7 87530094 87530094 1 + C T STAD 87530114 + 87530094 87530134 41 CGATAAGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAG TGATAAGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAG < 41bp 1 0.158421777636615 1 0.324806183576584 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530114 chr7:87530094 synonymous SNV . 0 1 hm5C_associated_SNPs_37211 0 0 1 0 2 DBF4 chr7:87530193 5'GT 87530193 Upstream 100bp
chr8 121468864 121468864 1 + A G STAD 121468848 + 121468828 121468868 41 ATGTTGTATCTTTAGAAGATCTCAGAAATGTTATTGACTCA ATGTTGTATCTTTAGAAGATCTCAGAAATGTTATTGGCTCA < 41bp 1 0.393841696175647 1 0.186857551336288 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTBP ENSG00000172167 CDS Human protein_coding chr8:121468848 chr8:121468864 nonsynonymous SNV 0.970 2 37 hm5C_associated_SNPs_37217 0 0 1 0 2 MTBP chr8:121468793 3'AG 121468793 Downstream 72bp
chr8 121468864 121468864 1 + A G STAD 121468848 + 121468828 121468868 41 ATGTTGTATCTTTAGAAGATCTCAGAAATGTTATTGACTCA ATGTTGTATCTTTAGAAGATCTCAGAAATGTTATTGGCTCA < 41bp 1 0.393841696175647 1 0.186857551336288 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTBP ENSG00000172167 CDS Human protein_coding chr8:121468848 chr8:121468864 nonsynonymous SNV 0.970 2 37 hm5C_associated_SNPs_37217 0 0 1 0 2 MTBP chr8:121468910 5'GT 121468910 Upstream 47bp
chr2 85852703 85852703 1 + C T STAD 85852718 + 85852698 85852738 41 GCAAACTTGGACAAGCAAGCCAAATTGTCCCGGGCATATGA GCAAATTTGGACAAGCAAGCCAAATTGTCCCGGGCATATGA < 41bp 1 0.395062257155564 1 0.142891228199005 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP39 ENSG00000168883 CDS Human protein_coding chr2:85852718 chr2:85852703 synonymous SNV . 0 6 hm5C_associated_SNPs_37220 0 0 1 0 1 USP39 chr2:85852662 3'AG 85852662 Downstream 42bp
chr14 105355887 105355887 1 + T C STAD 105355874 + 105355854 105355894 41 ACGAGGCGCCGGCAGCAGGGCTCGGATTACACGTCCACCTC ACGAGGCGCCGGCAGCAGGGCTCGGATTACACGCCCACCTC < 41bp 1 0.525572436215905 1 0.399309694766998 experiment 0.948855127568191 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEP170B ENSG00000099814 CDS Human protein_coding chr14:105355874 chr14:105355887 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_37221 0 0 0 0 1 CEP170B chr14:105355852 3'AG 105355852 Downstream 36bp
chr19 47111779 47111779 1 + G T STAD 47111772 + 47111752 47111792 41 TGACTTCCCGGAGTTCCTGACCATGATGGCCAGAAAGATGA TGACTTCCCGGAGTTCCTGACCATGATTGCCAGAAAGATGA < 41bp 1 0.0823294975374982 1 0.0408437252044678 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111772 chr19:47111779 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_37222 0 0 1 0 2 CALM3 chr19:47111739 3'AG 47111739 Downstream 41bp
chr19 47111779 47111779 1 + G T STAD 47111772 + 47111752 47111792 41 TGACTTCCCGGAGTTCCTGACCATGATGGCCAGAAAGATGA TGACTTCCCGGAGTTCCTGACCATGATTGCCAGAAAGATGA < 41bp 1 0.0823294975374982 1 0.0408437252044678 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111772 chr19:47111779 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_37222 0 0 1 0 2 CALM3 chr19:47111845 5'GT 47111845 Upstream 67bp
chr19 47111779 47111779 1 + G T STAD 47111782 + 47111762 47111802 41 GAGTTCCTGACCATGATGGCCAGAAAGATGAAGGACACAGA GAGTTCCTGACCATGATTGCCAGAAAGATGAAGGACACAGA < 41bp 1 0.661968276105775 1 0.662064075469971 experiment 0.676063447788449 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111782 chr19:47111779 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_37223 0 0 1 0 2 CALM3 chr19:47111739 3'AG 47111739 Downstream 41bp
chr19 47111779 47111779 1 + G T STAD 47111782 + 47111762 47111802 41 GAGTTCCTGACCATGATGGCCAGAAAGATGAAGGACACAGA GAGTTCCTGACCATGATTGCCAGAAAGATGAAGGACACAGA < 41bp 1 0.661968276105775 1 0.662064075469971 experiment 0.676063447788449 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111782 chr19:47111779 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_37223 0 0 1 0 2 CALM3 chr19:47111845 5'GT 47111845 Upstream 67bp
chr19 47111779 47111779 1 + G T STAD 47111797 + 47111777 47111817 41 ATGGCCAGAAAGATGAAGGACACAGACAGTGAGGAGGAGAT ATTGCCAGAAAGATGAAGGACACAGACAGTGAGGAGGAGAT < 41bp 1 0.363236284140597 1 0.0877914130687714 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111797 chr19:47111779 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_37224 0 0 1 0 2 CALM3 chr19:47111739 3'AG 47111739 Downstream 41bp
chr19 47111779 47111779 1 + G T STAD 47111797 + 47111777 47111817 41 ATGGCCAGAAAGATGAAGGACACAGACAGTGAGGAGGAGAT ATTGCCAGAAAGATGAAGGACACAGACAGTGAGGAGGAGAT < 41bp 1 0.363236284140597 1 0.0877914130687714 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111797 chr19:47111779 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_37224 0 0 1 0 2 CALM3 chr19:47111845 5'GT 47111845 Upstream 67bp
chr19 47111779 47111779 1 + G T STAD 47111799 + 47111779 47111819 41 GGCCAGAAAGATGAAGGACACAGACAGTGAGGAGGAGATCC TGCCAGAAAGATGAAGGACACAGACAGTGAGGAGGAGATCC < 41bp 1 0.333642545182367 1 0.230345159769058 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111799 chr19:47111779 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_37225 0 0 1 0 2 CALM3 chr19:47111739 3'AG 47111739 Downstream 41bp
chr19 47111779 47111779 1 + G T STAD 47111799 + 47111779 47111819 41 GGCCAGAAAGATGAAGGACACAGACAGTGAGGAGGAGATCC TGCCAGAAAGATGAAGGACACAGACAGTGAGGAGGAGATCC < 41bp 1 0.333642545182367 1 0.230345159769058 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111799 chr19:47111779 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_37225 0 0 1 0 2 CALM3 chr19:47111845 5'GT 47111845 Upstream 67bp
chr10 103919661 103919661 1 + A G STAD 103919665 + 103919645 103919685 41 TTAAACAGGTCCCTACAGTTCAGTCCCCCCGCCTTCTGCTC TTAAACAGGTCCCTACGGTTCAGTCCCCCCGCCTTCTGCTC < 41bp 1 0.266110476642259 1 0.132087856531143 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919665 chr10:103919661 nonsynonymous SNV 0.940 4 17 hm5C_associated_SNPs_37226 0 0 1 0 1 NOLC1 chr10:103919653 3'AG 103919653 Downstream 9bp
chr17 35413944 35413944 1 + G A STAD 35413929 + 35413909 35413949 41 TGTACCGCTCTCTTTTTGGCCAGCTCCACCCTCCCGACGAA TGTACCGCTCTCTTTTTGGCCAGCTCCACCCTCCCAACGAA < 41bp 1 0.344300138865872 1 0.412762731313705 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AATF ENSG00000108270 CDS Human other chr17:35413929 chr17:35413944 nonsynonymous SNV 0.001 0 36 hm5C_associated_SNPs_37227 0 0 1 0 1 AATF chr17:35413901 3'AG 35413901 Downstream 44bp
chr21 45560144 45560144 1 + C T STAD 45560135 + 45560115 45560155 41 CTTTTGTCTCCCGGTAGGAGCACGTTTGCCGTGGACGGGAA CTTTTGTCTCCCGGTAGGAGCACGTTTGCTGTGGACGGGAA < 41bp 1 0.534712903973615 1 0.371767103672028 experiment 0.930574192052771 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45560135 chr21:45560144 synonymous SNV . 0 30 hm5C_associated_SNPs_37230 0 0 1 0 2 C21orf33 chr21:45560132 3'AG 45560132 Downstream 13bp
chr21 45560144 45560144 1 + C T STAD 45560135 + 45560115 45560155 41 CTTTTGTCTCCCGGTAGGAGCACGTTTGCCGTGGACGGGAA CTTTTGTCTCCCGGTAGGAGCACGTTTGCTGTGGACGGGAA < 41bp 1 0.534712903973615 1 0.371767103672028 experiment 0.930574192052771 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45560135 chr21:45560144 synonymous SNV . 0 30 hm5C_associated_SNPs_37230 0 0 1 0 2 C21orf33 chr21:45560224 5'GT 45560224 Upstream 81bp
chr5 231070 231070 1 + G T STAD 231073 + 231053 231093 41 CCATGATCACCAGGGCAGGCCTTCCTTGCCAGGACCTAGAG CCATGATCACCAGGGCATGCCTTCCTTGCCAGGACCTAGAG < 41bp 1 0.299999533712126 1 0.214537382125854 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SDHA ENSG00000073578 CDS Human protein_coding chr5:231073 chr5:231070 nonsynonymous SNV 0.897 3 18 hm5C_associated_SNPs_37231 0 0 1 0 2 SDHA chr5:230991 3'AG 230991 Downstream 80bp
chr5 231070 231070 1 + G T STAD 231073 + 231053 231093 41 CCATGATCACCAGGGCAGGCCTTCCTTGCCAGGACCTAGAG CCATGATCACCAGGGCATGCCTTCCTTGCCAGGACCTAGAG < 41bp 1 0.299999533712126 1 0.214537382125854 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SDHA ENSG00000073578 CDS Human protein_coding chr5:231073 chr5:231070 nonsynonymous SNV 0.897 3 18 hm5C_associated_SNPs_37231 0 0 1 0 2 SDHA chr5:231115 5'GT 231115 Upstream 46bp
chr21 45217944 45217944 1 + C T STAD 45217948 + 45217928 45217968 41 GTGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGTCTGAG GTGGTGAGCGTGGAGATGCGCTGTCCCAGAAGAGGTCTGAG < 41bp 1 0.224835472110759 1 0.284418165683746 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217948 chr21:45217944 synonymous SNV . 0 17 hm5C_associated_SNPs_37234 0 0 1 0 1 RRP1 chr21:45217981 5'GT 45217981 Upstream 38bp
chr21 45217944 45217944 1 + C T STAD 45217964 + 45217944 45217984 41 CGCGCTGTCCCAGAAGAGGTCTGAGAAGCCGCCCGCAGGTG TGCGCTGTCCCAGAAGAGGTCTGAGAAGCCGCCCGCAGGTG < 41bp 1 0.693870276674606 1 0.213148474693298 experiment 0.612259446650788 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217964 chr21:45217944 synonymous SNV . 0 1 hm5C_associated_SNPs_37235 0 0 1 0 1 RRP1 chr21:45217981 5'GT 45217981 Upstream 38bp
chr17 64685129 64685129 1 + C T STAD 64685113 + 64685093 64685133 41 AGGTGAGTACTACAACGTACCCATTCCGGAAGGGGACGAGG AGGTGAGTACTACAACGTACCCATTCCGGAAGGGGATGAGG < 41bp 1 0.016016028610823 1 0.0277039110660553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64685113 chr17:64685129 synonymous SNV . 0 37 hm5C_associated_SNPs_37236 0 0 1 0 2 PRKCA chr17:64685069 3'AG 64685069 Downstream 61bp
chr17 64685129 64685129 1 + C T STAD 64685113 + 64685093 64685133 41 AGGTGAGTACTACAACGTACCCATTCCGGAAGGGGACGAGG AGGTGAGTACTACAACGTACCCATTCCGGAAGGGGATGAGG < 41bp 1 0.016016028610823 1 0.0277039110660553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64685113 chr17:64685129 synonymous SNV . 0 37 hm5C_associated_SNPs_37236 0 0 1 0 2 PRKCA chr17:64685165 5'GT 64685165 Upstream 37bp
chr4 154236715 154236715 1 + C T STAD 154236725 + 154236705 154236745 41 ATATTAATTGCAGACAGTAACAACCAATGTGTGCAGGTATA ATATTAATTGTAGACAGTAACAACCAATGTGTGCAGGTATA < 41bp 1 0.185170582010653 1 0.0842248201370239 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154236725 chr4:154236715 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_37237 0 0 0 0 2 TRIM2 chr4:154236637 3'AG 154236637 Downstream 79bp
chr4 154236715 154236715 1 + C T STAD 154236725 + 154236705 154236745 41 ATATTAATTGCAGACAGTAACAACCAATGTGTGCAGGTATA ATATTAATTGTAGACAGTAACAACCAATGTGTGCAGGTATA < 41bp 1 0.185170582010653 1 0.0842248201370239 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154236725 chr4:154236715 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_37237 0 0 0 0 2 TRIM2 chr4:154236740 5'GT 154236740 Upstream 26bp
chr1 94964197 94964197 1 + G A STAD 94964179 + 94964159 94964199 41 TTCGATCTGGGGCTAATGTTCTAATTTGTGGTCCAAATGGC TTCGATCTGGGGCTAATGTTCTAATTTGTGGTCCAAATAGC < 41bp 1 0.503551468148848 1 0.238756865262985 experiment 0.992897063702305 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94964179 chr1:94964197 nonsynonymous SNV 0.998 5 39 hm5C_associated_SNPs_37239 0 0 1 0 2 ABCD3 chr1:94964158 3'AG 94964158 Downstream 40bp
chr1 94964197 94964197 1 + G A STAD 94964179 + 94964159 94964199 41 TTCGATCTGGGGCTAATGTTCTAATTTGTGGTCCAAATGGC TTCGATCTGGGGCTAATGTTCTAATTTGTGGTCCAAATAGC < 41bp 1 0.503551468148848 1 0.238756865262985 experiment 0.992897063702305 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94964179 chr1:94964197 nonsynonymous SNV 0.998 5 39 hm5C_associated_SNPs_37239 0 0 1 0 2 ABCD3 chr1:94964235 5'GT 94964235 Upstream 39bp
chr9 134021655 134021655 1 + G A STAD 134021668 + 134021648 134021688 41 TAGTTCCGTGCCATTGAAGTCCTCAGTCTTGCCCTCACCAT TAGTTCCATGCCATTGAAGTCCTCAGTCTTGCCCTCACCAT < 41bp 1 0.230840137145457 1 0.0590619444847107 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NUP214 ENSG00000126883 CDS Human protein_coding chr9:134021668 chr9:134021655 nonsynonymous SNV 0.003 0 8 hm5C_associated_SNPs_37240 0 0 0 0 1 NUP214 chr9:134021691 5'GT 134021691 Upstream 37bp
chr17 48631744 48631744 1 + G A STAD 48631727 + 48631707 48631747 41 TGTGTGTGCCTATTGACCGCCTTTTCCGAGCGCATGCGTCG TGTGTGTGCCTATTGACCGCCTTTTCCGAGCGCATGCATCG < 41bp 1 0.0425861914768332 1 0.0114866495132446 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPATA20 ENSG00000006282 CDS Human protein_coding chr17:48631727 chr17:48631744 nonsynonymous SNV 0.936 0 38 hm5C_associated_SNPs_37241 0 0 1 0 1 SPATA20 chr17:48631811 5'GT 48631811 Upstream 68bp
chr17 43323028 43323028 1 + C T STAD 43323037 + 43323017 43323057 41 GTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCCCAGG GTGGAGTACTTTGGAGAGAACCCCAAGACCACATCCCCAGG < 41bp 1 0.450258133522463 1 0.220266461372375 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FMNL1 ENSG00000184922 CDS Human antisense chr17:43323037 chr17:43323028 synonymous SNV . 0 12 hm5C_associated_SNPs_37243 0 0 0 0 3 FMNL1 chr17:43322986 3'AG 43322986 Downstream 43bp
chr17 43323028 43323028 1 + C T STAD 43323037 + 43323017 43323057 41 GTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCCCAGG GTGGAGTACTTTGGAGAGAACCCCAAGACCACATCCCCAGG < 41bp 1 0.450258133522463 1 0.220266461372375 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43323037 chr17:43323028 synonymous SNV . 0 12 hm5C_associated_SNPs_37243 0 0 0 0 3 FMNL1 chr17:43322999 3'AG 43322999 Downstream 30bp
chr17 43323028 43323028 1 + C T STAD 43323037 + 43323017 43323057 41 GTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCCCAGG GTGGAGTACTTTGGAGAGAACCCCAAGACCACATCCCCAGG < 41bp 1 0.450258133522463 1 0.220266461372375 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43323037 chr17:43323028 synonymous SNV . 0 12 hm5C_associated_SNPs_37243 0 0 0 0 3 FMNL1 chr17:43323100 5'GT 43323100 Upstream 73bp
chr2 32773057 32773057 1 + G C STAD 32773043 + 32773023 32773063 41 TGGAACAAGCCTTAACTAAGCAAAGGCTGGAAGAGGAACAT TGGAACAAGCCTTAACTAAGCAAAGGCTGGAAGACGAACAT < 41bp 1 0.195118420863802 1 0.701326549053192 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773043 chr2:32773057 nonsynonymous SNV 0.979 3 35 hm5C_associated_SNPs_37244 0 0 1 0 1 BIRC6 chr2:32773081 5'GT 32773081 Upstream 25bp
chr1 113241043 113241043 1 + G A STAD 113241053 + 113241033 113241073 41 CCTCCAAGAAGGGCAAAGCTCGCCTGAGCCCTCGAAGTGTG CCTCCAAGAAAGGCAAAGCTCGCCTGAGCCCTCGAAGTGTG < 41bp 1 0.659998975105092 1 0.163508981466293 experiment 0.680002049789817 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113241053 chr1:113241043 synonymous SNV . 0 11 hm5C_associated_SNPs_37245 0 0 1 0 1 MOV10 chr1:113241100 5'GT 113241100 Upstream 58bp
chr12 109547639 109547639 1 + G A STAD 109547637 + 109547617 109547657 41 TTCTTGATCTTTTTCAGAAGCGGCACCATGTACTACAGACG TTCTTGATCTTTTTCAGAAGCGACACCATGTACTACAGACG < 41bp 1 0.432717636920497 1 0.370968371629715 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109547637 chr12:109547639 synonymous SNV . 0 23 hm5C_associated_SNPs_37247 0 0 1 0 1 UNG chr12:109547634 3'AG 109547634 Downstream 6bp
chr10 5937131 5937131 1 + C G STAD 5937118 + 5937098 5937138 41 GAGATGCCAGAGGACGAGTGCCCACTTGCTGGTCTTCACAG GAGATGCCAGAGGACGAGTGCCCACTTGCTGGTGTTCACAG < 41bp 1 0.122025698762588 1 0.0631823241710663 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5937118 chr10:5937131 synonymous SNV . 0 34 hm5C_associated_SNPs_37248 0 0 0 0 1 FBXO18 chr10:5937150 5'GT 5937150 Upstream 20bp
chr1 41475868 41475868 1 + C A STAD 41475860 + 41475840 41475880 41 TATAGTGACAGGAGTGGAAGCAGCTCCCCTGACTCTGAAAT TATAGTGACAGGAGTGGAAGCAGCTCCCATGACTCTGAAAT < 41bp 1 0.334292721788256 1 0.811001420021057 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CTPS1 ENSG00000171793 CDS Human protein_coding chr1:41475860 chr1:41475868 nonsynonymous SNV 0.998 4 29 hm5C_associated_SNPs_37249 0 0 1 0 1 CTPS1 chr1:41475833 3'AG 41475833 Downstream 36bp
chr10 104160788 104160788 1 + C T STAD 104160790 + 104160770 104160810 41 GGGTACCCGACCCTCACCCGCCTCCTTCTGAAGGCTGGTCA GGGTACCCGACCCTCACCTGCCTCCTTCTGAAGGCTGGTCA < 41bp 1 0.0492588443622699 1 0.0797241032123566 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160790 chr10:104160788 nonsynonymous SNV 0.931 2 19 hm5C_associated_SNPs_37250 0 0 1 0 2 NFKB2 chr10:104160704 3'AG 104160704 Downstream 85bp
chr10 104160788 104160788 1 + C T STAD 104160790 + 104160770 104160810 41 GGGTACCCGACCCTCACCCGCCTCCTTCTGAAGGCTGGTCA GGGTACCCGACCCTCACCTGCCTCCTTCTGAAGGCTGGTCA < 41bp 1 0.0492588443622699 1 0.0797241032123566 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160790 chr10:104160788 nonsynonymous SNV 0.931 2 19 hm5C_associated_SNPs_37250 0 0 1 0 2 NFKB2 chr10:104160806 5'GT 104160806 Upstream 19bp
chr19 50285894 50285894 1 + G C STAD 50285882 + 50285862 50285902 41 TGACCTGGCCAGCCGCAACCCCACCTTCATGTGCCTGGCCC TGACCTGGCCAGCCGCAACCCCACCTTCATGTCCCTGGCCC < 41bp 1 0.254011135070828 1 0.232338100671768 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50285882 chr19:50285894 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_37252 0 0 1 0 1 AP2A1 chr19:50285981 5'GT 50285981 Upstream 88bp
chr22 32234822 32234822 1 + T C STAD 32234816 + 32234796 32234836 41 CGCCCCCGCTGAGCAGTAGCCCACTCTATAGCCGAGGTGAG CGCCCCCGCTGAGCAGTAGCCCACTCCATAGCCGAGGTGAG < 41bp 1 0.11462158215946 1 0.0971682369709015 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32234816 chr22:32234822 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_37253 0 0 0 0 1 DEPDC5 chr22:32234831 5'GT 32234831 Upstream 10bp
chr2 242695360 242695360 1 + G A STAD 242695362 + 242695342 242695382 41 CCTGTGGAGCGGCTCTACGACATCGTGACTGACCTGCGCGC CCTGTGGAGCGGCTCTACAACATCGTGACTGACCTGCGCGC < 41bp 1 0.625089110895251 1 0.194612354040146 experiment 0.749821778209499 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242695362 chr2:242695360 nonsynonymous SNV 0.048 0 19 hm5C_associated_SNPs_37254 0 0 1 0 1 D2HGDH chr2:242695264 3'AG 242695264 Downstream 97bp
chr10 103919306 103919306 1 + A C STAD 103919298 + 103919278 103919318 41 CCAGTGACGAGGAAGAGGAGCAAAAAAAACCCATGAAAAAT CCAGTGACGAGGAAGAGGAGCAAAAAAACCCCATGAAAAAT < 41bp 1 0.525123513022072 1 0.467539638280869 experiment 0.949752973955856 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919298 chr10:103919306 nonsynonymous SNV 0.467 2 29 hm5C_associated_SNPs_37255 0 0 1 0 1 NOLC1 chr10:103919325 5'GT 103919325 Upstream 20bp
chr5 92923699 92923699 1 + C T STAD 92923717 + 92923697 92923737 41 AACGGCCACTGCTACCTGTCCGGCTACATCTCGCTGCTGCT AATGGCCACTGCTACCTGTCCGGCTACATCTCGCTGCTGCT < 41bp 1 0.370597391495446 1 0.370802104473114 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NR2F1 ENSG00000175745 CDS Human protein_coding chr5:92923717 chr5:92923699 synonymous SNV . 0 3 hm5C_associated_SNPs_37256 0 0 1 0 1 NR2F1 chr5:92923623 3'AG 92923623 Downstream 77bp
chr5 1036427 1036427 1 + G A STAD 1036447 + 1036427 1036467 41 GAGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGG AAGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGG < 41bp 1 0.192927289580111 1 0.142615884542465 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036447 chr5:1036427 nonsynonymous SNV 0.991 4 1 hm5C_associated_SNPs_37267 0 0 0 0 2 NKD2 chr5:1036372 3'AG 1036372 Downstream 56bp
chr5 1036427 1036427 1 + G A STAD 1036447 + 1036427 1036467 41 GAGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGG AAGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGG < 41bp 1 0.192927289580111 1 0.142615884542465 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036447 chr5:1036427 nonsynonymous SNV 0.991 4 1 hm5C_associated_SNPs_37267 0 0 0 0 2 NKD2 chr5:1036499 5'GT 1036499 Upstream 73bp
chr19 18545051 18545051 1 + G A STAD 18545070 + 18545050 18545090 41 CGTGTGATGGGGCGGCAGCCCCGGGCCTCTCTGCGGGCCTA CATGTGATGGGGCGGCAGCCCCGGGCCTCTCTGCGGGCCTA < 41bp 1 0.733453586248097 1 0.666930079460144 experiment 0.533092827503805 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18545070 chr19:18545051 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_37268 0 0 1 0 1 SSBP4 chr19:18545027 3'AG 18545027 Downstream 25bp
chr6 53660207 53660207 1 + G A STAD 53660192 + 53660172 53660212 41 GAGCTGCTGCTGGACGCCAACCAGCTCCGCGAGCTGCCCGA GAGCTGCTGCTGGACGCCAACCAGCTCCGCGAGCTACCCGA < 41bp 1 0.49613084308332 1 0.340017318725586 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53660192 chr6:53660207 synonymous SNV . 0 36 hm5C_associated_SNPs_37269 0 0 0 0 1 LRRC1 chr6:53660213 5'GT 53660213 Upstream 7bp
chr21 45544600 45544600 1 + G A STAD 45544584 + 45544564 45544604 41 AAGAGGTTCGAGATCTCTTGCAACCTGTCTTTGGACGCCAT AAGAGGTTCGAGATCTCTTGCAACCTGTCTTTGGACACCAT < 41bp 1 0.242870672307657 1 0.147067457437515 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45544584 chr21:45544600 nonsynonymous SNV 0.983 4 37 hm5C_associated_SNPs_37270 0 0 1 0 1 PWP2 chr21:45544608 5'GT 45544608 Upstream 9bp
chr11 988612 988612 1 + C T STAD 988594 + 988574 988614 41 GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGCGACCGC GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGCGACTGC < 41bp 1 0.693726418689169 1 0.404895514249802 experiment 0.612547162621661 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:988594 chr11:988612 nonsynonymous SNV 0.997 4 39 hm5C_associated_SNPs_37271 0 0 1 0 2 AP2A2 chr11:988552 3'AG 988552 Downstream 61bp
chr11 988612 988612 1 + C T STAD 988594 + 988574 988614 41 GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGCGACCGC GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGCGACTGC < 41bp 1 0.693726418689169 1 0.404895514249802 experiment 0.612547162621661 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:988594 chr11:988612 nonsynonymous SNV 0.997 4 39 hm5C_associated_SNPs_37271 0 0 1 0 2 AP2A2 chr11:988689 5'GT 988689 Upstream 78bp
chr1 41289877 41289877 1 + G A STAD 41289886 + 41289866 41289906 41 TCCCGTTACCCGCCCGTTGCCACCTGCCACCGGCCGGGCAG TCCCGTTACCCACCCGTTGCCACCTGCCACCGGCCGGGCAG < 41bp 1 0.673100258866604 1 0.206561654806137 experiment 0.653799482266792 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41289886 chr1:41289877 synonymous SNV . 0 12 hm5C_associated_SNPs_37272 0 0 0 0 1 KCNQ4 chr1:41289930 5'GT 41289930 Upstream 54bp
chr2 241533993 241533993 1 + A G STAD 241533998 + 241533978 241534018 41 GGTAGATGCAGCGGTAGCATCTGAGCTCCTGTCCCAGCTCC GGTAGATGCAGCGGTGGCATCTGAGCTCCTGTCCCAGCTCC < 41bp 1 0.79394465975364 1 0.820061564445496 experiment 0.41211068049272 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241533998 chr2:241533993 synonymous SNV . 0 16 hm5C_associated_SNPs_37273 0 0 1 1 1 CAPN10 chr2:241533960 3'AG 241533960 Downstream 34bp
chr5 14280525 14280525 1 + C A STAD 14280517 + 14280497 14280537 41 GACAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCCTGT GACAGGAGGATCTCAGGAGACTCATTTCATATCTAGCCTGT < 41bp 1 0.289232929873744 1 0.0913501381874084 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14280517 chr5:14280525 synonymous SNV . 0 29 hm5C_associated_SNPs_37275 0 0 1 0 2 TRIO chr5:14280431 3'AG 14280431 Downstream 95bp
chr5 14280525 14280525 1 + C A STAD 14280517 + 14280497 14280537 41 GACAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCCTGT GACAGGAGGATCTCAGGAGACTCATTTCATATCTAGCCTGT < 41bp 1 0.289232929873744 1 0.0913501381874084 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14280517 chr5:14280525 synonymous SNV . 0 29 hm5C_associated_SNPs_37275 0 0 1 0 2 TRIO chr5:14280545 5'GT 14280545 Upstream 21bp
chr19 36510151 36510151 1 + C T STAD 36510139 + 36510119 36510159 41 ATCGTTCTTGCCCTCAGGTTCGTCCAGCTCCACGCCCACCC ATCGTTCTTGCCCTCAGGTTCGTCCAGCTCCATGCCCACCC < 41bp 1 0.23517564582224 1 0.0543162226676941 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLIP3;LOC101927572 ENSG00000105270 CDS Human protein_coding chr19:36510139 chr19:36510151 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_37277 0 0 0 0 1 CLIP3;LOC101927572 chr19:36510136 3'AG 36510136 Downstream 16bp
chr19 36510151 36510151 1 + C T STAD 36510143 + 36510123 36510163 41 TTCTTGCCCTCAGGTTCGTCCAGCTCCACGCCCACCCACTG TTCTTGCCCTCAGGTTCGTCCAGCTCCATGCCCACCCACTG < 41bp 1 0.409343372673741 1 0.711740255355835 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLIP3;LOC101927572 ENSG00000105270 CDS Human protein_coding chr19:36510143 chr19:36510151 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_37278 0 0 0 0 1 CLIP3;LOC101927572 chr19:36510136 3'AG 36510136 Downstream 16bp
chr17 37650838 37650838 1 + A G STAD 37650826 + 37650806 37650846 41 CTAGACAATGAGAAAGAGGGCTTCCCAATCACAGCCATTCG CTAGACAATGAGAAAGAGGGCTTCCCAATCACGGCCATTCG < 41bp 1 0.0580007628709999 1 0.060857743024826 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37650826 chr17:37650838 synonymous SNV . 0 33 hm5C_associated_SNPs_37279 0 0 1 0 1 CDK12 chr17:37650777 3'AG 37650777 Downstream 62bp
chr20 32439984 32439984 1 + C A STAD 32439982 + 32439962 32440002 41 CAGTCCCTCTACCAAATGTTCCCTCTATAGCCCTACCATCA CAGTCCCTCTACCAAATGTTCCATCTATAGCCCTACCATCA < 41bp 1 0.0415349097476653 1 0.0762052536010742 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHMP4B ENSG00000101421 CDS Human protein_coding chr20:32439982 chr20:32439984 synonymous SNV . 0 23 hm5C_associated_SNPs_37280 0 0 1 0 1 CHMP4B chr20:32440009 5'GT 32440009 Upstream 26bp
chr20 32439984 32439984 1 + C A STAD 32439983 + 32439963 32440003 41 AGTCCCTCTACCAAATGTTCCCTCTATAGCCCTACCATCAA AGTCCCTCTACCAAATGTTCCATCTATAGCCCTACCATCAA < 41bp 1 0.151670445928184 1 0.0385763049125671 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CHMP4B ENSG00000101421 CDS Human protein_coding chr20:32439983 chr20:32439984 synonymous SNV . 0 22 hm5C_associated_SNPs_37281 0 0 1 0 1 CHMP4B chr20:32440009 5'GT 32440009 Upstream 26bp
chr11 57575890 57575890 1 + G A STAD 57575904 + 57575884 57575924 41 CTCTGCGTCAAGAGAAGGCTCTTTCTGCCATAGCTGACCTC CTCTGCATCAAGAGAAGGCTCTTTCTGCCATAGCTGACCTC < 41bp 1 0.0919659813626004 1 0.0578905940055847 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57575904 chr11:57575890 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_37283 0 0 1 0 1 CTNND1 chr11:57575862 3'AG 57575862 Downstream 29bp
chr4 128748490 128748490 1 + A G STAD 128748508 + 128748488 128748528 41 ACATGGAGCATGAAGAGAGACCAAAAGCCTTAAATGACTTG ACGTGGAGCATGAAGAGAGACCAAAAGCCTTAAATGACTTG < 41bp 1 0.310016349541192 1 0.174303561449051 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4L ENSG00000164070 CDS Human protein_coding chr4:128748508 chr4:128748490 nonsynonymous SNV 0.999 0 3 hm5C_associated_SNPs_37284 0 0 0 0 2 HSPA4L chr4:128748460 3'AG 128748460 Downstream 31bp
chr4 128748490 128748490 1 + A G STAD 128748508 + 128748488 128748528 41 ACATGGAGCATGAAGAGAGACCAAAAGCCTTAAATGACTTG ACGTGGAGCATGAAGAGAGACCAAAAGCCTTAAATGACTTG < 41bp 1 0.310016349541192 1 0.174303561449051 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4L ENSG00000164070 CDS Human protein_coding chr4:128748508 chr4:128748490 nonsynonymous SNV 0.999 0 3 hm5C_associated_SNPs_37284 0 0 0 0 2 HSPA4L chr4:128748579 5'GT 128748579 Upstream 90bp
chr7 4830444 4830444 1 + T C STAD 4830446 + 4830426 4830466 41 TGCTGCCCTGCCCAGGTGTCCCCCCCAGGTGGTCACCGTGC TGCTGCCCTGCCCAGGTGCCCCCCCCAGGTGGTCACCGTGC < 41bp 1 0.0875202119682721 1 0.0321706831455231 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4830446 chr7:4830444 synonymous SNV . 0 19 hm5C_associated_SNPs_37285 0 0 1 0 1 AP5Z1 chr7:4830518 5'GT 4830518 Upstream 75bp
chr9 139751877 139751877 1 + C T STAD 139751890 + 139751870 139751910 41 GATGTGGCCGTGCGGCCGGGCCCCTGCTGGGCCCCTAATTA GATGTGGTCGTGCGGCCGGGCCCCTGCTGGGCCCCTAATTA < 41bp 1 0.117472876081404 1 0.172374129295349 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139751890 chr9:139751877 nonsynonymous SNV 0.005 0 8 hm5C_associated_SNPs_37286 0 0 0 0 1 MAMDC4 chr9:139751819 3'AG 139751819 Downstream 59bp
chr9 139751877 139751877 1 + C T STAD 139751891 + 139751871 139751911 41 ATGTGGCCGTGCGGCCGGGCCCCTGCTGGGCCCCTAATTAC ATGTGGTCGTGCGGCCGGGCCCCTGCTGGGCCCCTAATTAC < 41bp 1 0.144444118012799 1 0.143221229314804 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139751891 chr9:139751877 nonsynonymous SNV 0.005 0 7 hm5C_associated_SNPs_37287 0 0 0 0 1 MAMDC4 chr9:139751819 3'AG 139751819 Downstream 59bp
chr9 139751877 139751877 1 + C T STAD 139751892 + 139751872 139751912 41 TGTGGCCGTGCGGCCGGGCCCCTGCTGGGCCCCTAATTACT TGTGGTCGTGCGGCCGGGCCCCTGCTGGGCCCCTAATTACT < 41bp 1 0.0721812563011441 1 0.118848383426666 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139751892 chr9:139751877 nonsynonymous SNV 0.005 0 6 hm5C_associated_SNPs_37288 0 0 0 0 1 MAMDC4 chr9:139751819 3'AG 139751819 Downstream 59bp
chr9 139751877 139751877 1 + C T STAD 139751893 + 139751873 139751913 41 GTGGCCGTGCGGCCGGGCCCCTGCTGGGCCCCTAATTACTG GTGGTCGTGCGGCCGGGCCCCTGCTGGGCCCCTAATTACTG < 41bp 1 0.541981254043926 1 0.24402317404747 experiment 0.916037491912147 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139751893 chr9:139751877 nonsynonymous SNV 0.005 0 5 hm5C_associated_SNPs_37289 0 0 0 0 1 MAMDC4 chr9:139751819 3'AG 139751819 Downstream 59bp
chr9 140100312 140100312 1 + C T STAD 140100319 + 140100299 140100339 41 CTGGGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGT CTGGGTCGCGAGGTCCGGCGCCGGCGGCTTGGCTGCCGGGT < 41bp 1 0.37561977558161 1 0.679355621337891 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100319 chr9:140100312 nonsynonymous SNV 0.981 4 14 hm5C_associated_SNPs_37290 0 0 0 0 1 NDOR1 chr9:140100364 5'GT 140100364 Upstream 53bp
chr9 140100312 140100312 1 + C T STAD 140100320 + 140100300 140100340 41 TGGGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGTG TGGGTCGCGAGGTCCGGCGCCGGCGGCTTGGCTGCCGGGTG < 41bp 1 0.703567591057338 1 0.82944792509079 experiment 0.592864817885324 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100320 chr9:140100312 nonsynonymous SNV 0.981 4 13 hm5C_associated_SNPs_37291 0 0 0 0 1 NDOR1 chr9:140100364 5'GT 140100364 Upstream 53bp
chr9 140100312 140100312 1 + C T STAD 140100331 + 140100311 140100351 41 GCCCGGCGCCGGCGGCTTGGCTGCCGGGTGCAGGCCCTGGA GTCCGGCGCCGGCGGCTTGGCTGCCGGGTGCAGGCCCTGGA < 41bp 1 0.622972378730872 1 0.526534914970398 experiment 0.754055242538255 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100331 chr9:140100312 nonsynonymous SNV 0.981 4 2 hm5C_associated_SNPs_37292 0 0 0 0 1 NDOR1 chr9:140100364 5'GT 140100364 Upstream 53bp
chr17 7463187 7463187 1 + T C STAD 7463183 + 7463163 7463203 41 AGCAGCACTCTGTCCTGCACCTGGTTCCCATTAACGCCACC AGCAGCACTCTGTCCTGCACCTGGCTCCCATTAACGCCACC < 41bp 1 0.328269076641446 1 0.677976608276367 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNFSF12-TNFSF13;TNFSF13 ENSG00000161955;ENSG00000239697;ENSG00000248871 CDS Human other chr17:7463183 chr17:7463187 nonsynonymous SNV 0.895 2 25 hm5C_associated_SNPs_37294 0 0 0 0 3 TNFSF12-TNFSF13;TNFSF13;TNFSF13 chr17:7463163 3'AG 7463163 Downstream 25bp
chr17 7463187 7463187 1 + T C STAD 7463183 + 7463163 7463203 41 AGCAGCACTCTGTCCTGCACCTGGTTCCCATTAACGCCACC AGCAGCACTCTGTCCTGCACCTGGCTCCCATTAACGCCACC < 41bp 1 0.328269076641446 1 0.677976608276367 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNFSF12-TNFSF13;TNFSF13 ENSG00000161955;ENSG00000239697;ENSG00000248871 CDS Human other chr17:7463183 chr17:7463187 nonsynonymous SNV 0.895 2 25 hm5C_associated_SNPs_37294 0 0 0 0 3 TNFSF12-TNFSF13;TNFSF13 chr17:7463165 3'AG 7463165 Downstream 23bp
chr17 7463187 7463187 1 + T C STAD 7463183 + 7463163 7463203 41 AGCAGCACTCTGTCCTGCACCTGGTTCCCATTAACGCCACC AGCAGCACTCTGTCCTGCACCTGGCTCCCATTAACGCCACC < 41bp 1 0.328269076641446 1 0.677976608276367 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNFSF12-TNFSF13;TNFSF13 ENSG00000161955;ENSG00000239697;ENSG00000248871 CDS Human other chr17:7463183 chr17:7463187 nonsynonymous SNV 0.895 2 25 hm5C_associated_SNPs_37294 0 0 0 0 3 TNFSF12-TNFSF13;TNFSF13 chr17:7463168 3'AG 7463168 Downstream 20bp
chr2 27662650 27662650 1 + C T STAD 27662638 + 27662618 27662658 41 TGTTTCCTTTTCTAGGAGTTCATTCAAAAGTGCCTGCAGTC TGTTTCCTTTTCTAGGAGTTCATTCAAAAGTGTCTGCAGTC < 41bp 1 0.0542884606596107 1 0.0514860153198242 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27662638 chr2:27662650 synonymous SNV . 0 33 hm5C_associated_SNPs_37295 0 0 1 0 1 NRBP1 chr2:27662633 3'AG 27662633 Downstream 18bp
chr10 102798404 102798404 1 + G A STAD 102798423 + 102798403 102798443 41 CGCCCCTGGCTGGGGGCACCCCTGCAGGTGGGACTGGTGGG CACCCCTGGCTGGGGGCACCCCTGCAGGTGGGACTGGTGGG < 41bp 1 0.177964196370721 1 0.454743146896362 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SFXN3 ENSG00000107819 CDS Human protein_coding chr10:102798423 chr10:102798404 nonsynonymous SNV 0.996 0 2 hm5C_associated_SNPs_37299 0 0 1 0 2 SFXN3 chr10:102798400 3'AG 102798400 Downstream 5bp
chr10 102798404 102798404 1 + G A STAD 102798423 + 102798403 102798443 41 CGCCCCTGGCTGGGGGCACCCCTGCAGGTGGGACTGGTGGG CACCCCTGGCTGGGGGCACCCCTGCAGGTGGGACTGGTGGG < 41bp 1 0.177964196370721 1 0.454743146896362 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SFXN3 ENSG00000107819 CDS Human protein_coding chr10:102798423 chr10:102798404 nonsynonymous SNV 0.996 0 2 hm5C_associated_SNPs_37299 0 0 1 0 2 SFXN3 chr10:102798449 5'GT 102798449 Upstream 46bp
chr22 24236713 24236713 1 + G T STAD 24236718 + 24236698 24236738 41 GCCTCCGTGCCGGACGGGTTCCTCTCCGAGCTCACCCAGCA GCCTCCGTGCCGGACTGGTTCCTCTCCGAGCTCACCCAGCA < 41bp 1 0.142710720749447 1 0.0452825427055359 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MIF ENSG00000240972 CDS Human protein_coding chr22:24236718 chr22:24236713 nonsynonymous SNV 0.982 3 16 hm5C_associated_SNPs_37300 0 0 1 0 1 MIF chr22:24236769 5'GT 24236769 Upstream 57bp
chr1 977059 977059 1 + G A STAD 977045 + 977025 977065 41 GGGGCCGCCCGGGGTCTCCTCCTGCAGAAAGTGCGCTCCGG GGGGCCGCCCGGGGTCTCCTCCTGCAGAAAGTGCACTCCGG < 41bp 1 0.0956560707581162 1 0.464259535074234 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:977045 chr1:977059 nonsynonymous SNV 0.948 1 35 hm5C_associated_SNPs_37301 0 0 1 0 1 AGRN chr1:977082 5'GT 977082 Upstream 24bp
chr1 26135608 26135608 1 + C A STAD 26135615 + 26135595 26135635 41 GCCTGCCTGACTGCCATCAGCGACTTCTACTACACTGTGAT GCCTGCCTGACTGACATCAGCGACTTCTACTACACTGTGAT < 41bp 1 0.222940250075601 1 0.110582321882248 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26135615 chr1:26135608 nonsynonymous SNV 0.623 5 14 hm5C_associated_SNPs_37302 0 0 1 0 2 SELENON chr1:26135517 3'AG 26135517 Downstream 92bp
chr1 26135608 26135608 1 + C A STAD 26135615 + 26135595 26135635 41 GCCTGCCTGACTGCCATCAGCGACTTCTACTACACTGTGAT GCCTGCCTGACTGACATCAGCGACTTCTACTACACTGTGAT < 41bp 1 0.222940250075601 1 0.110582321882248 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26135615 chr1:26135608 nonsynonymous SNV 0.623 5 14 hm5C_associated_SNPs_37302 0 0 1 0 2 SELENON chr1:26135641 5'GT 26135641 Upstream 34bp
chr2 184023068 184023068 1 + A T STAD 184023063 + 184023043 184023083 41 TTATCAATCTAAACTGCAGGCTCGGAAAGCCTTAAGCAAAG TTATCAATCTAAACTGCAGGCTCGGTAAGCCTTAAGCAAAG < 41bp 1 0.72397466823575 1 0.288871109485626 experiment 0.552050663528501 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUP35 ENSG00000163002 CDS Human protein_coding chr2:184023063 chr2:184023068 stopgain 0.998 1 26 hm5C_associated_SNPs_37303 0 0 1 1 2 NUP35 chr2:184023011 3'AG 184023011 Downstream 58bp
chr2 184023068 184023068 1 + A T STAD 184023063 + 184023043 184023083 41 TTATCAATCTAAACTGCAGGCTCGGAAAGCCTTAAGCAAAG TTATCAATCTAAACTGCAGGCTCGGTAAGCCTTAAGCAAAG < 41bp 1 0.72397466823575 1 0.288871109485626 experiment 0.552050663528501 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUP35 ENSG00000163002 CDS Human protein_coding chr2:184023063 chr2:184023068 stopgain 0.998 1 26 hm5C_associated_SNPs_37303 0 0 1 1 2 NUP35 chr2:184023139 5'GT 184023139 Upstream 72bp
chr14 37739664 37739664 1 + A C STAD 37739679 + 37739659 37739699 41 AGAGAAAACTAAAGTTTAAGCTGGAACTCCAAGAGAAAGAA AGAGACAACTAAAGTTTAAGCTGGAACTCCAAGAGAAAGAA < 41bp 1 0.636101751516265 1 0.439152777194977 experiment 0.727796496967471 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MIPOL1 ENSG00000151338 CDS Human protein_coding chr14:37739679 chr14:37739664 nonsynonymous SNV 0.998 0 6 hm5C_associated_SNPs_37304 0 0 1 0 2 MIPOL1 chr14:37739625 3'AG 37739625 Downstream 40bp
chr14 37739664 37739664 1 + A C STAD 37739679 + 37739659 37739699 41 AGAGAAAACTAAAGTTTAAGCTGGAACTCCAAGAGAAAGAA AGAGACAACTAAAGTTTAAGCTGGAACTCCAAGAGAAAGAA < 41bp 1 0.636101751516265 1 0.439152777194977 experiment 0.727796496967471 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MIPOL1 ENSG00000151338 CDS Human protein_coding chr14:37739679 chr14:37739664 nonsynonymous SNV 0.998 0 6 hm5C_associated_SNPs_37304 0 0 1 0 2 MIPOL1 chr14:37739730 5'GT 37739730 Upstream 67bp
chr15 90159667 90159667 1 + C T STAD 90159672 + 90159652 90159692 41 GACTAAGAGTGTGGCCGAGACTCCAGTGCATAAGCAGATCT GACTAAGAGTGTGGCTGAGACTCCAGTGCATAAGCAGATCT < 41bp 1 0.762240066613454 1 0.908434569835663 experiment 0.475519866773092 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TICRR ENSG00000140534 CDS Human protein_coding chr15:90159672 chr15:90159667 synonymous SNV . 0 16 hm5C_associated_SNPs_37305 0 0 1 0 2 TICRR chr15:90159636 3'AG 90159636 Downstream 32bp
chr15 90159667 90159667 1 + C T STAD 90159672 + 90159652 90159692 41 GACTAAGAGTGTGGCCGAGACTCCAGTGCATAAGCAGATCT GACTAAGAGTGTGGCTGAGACTCCAGTGCATAAGCAGATCT < 41bp 1 0.762240066613454 1 0.908434569835663 experiment 0.475519866773092 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TICRR ENSG00000140534 CDS Human protein_coding chr15:90159672 chr15:90159667 synonymous SNV . 0 16 hm5C_associated_SNPs_37305 0 0 1 0 2 TICRR chr15:90159726 5'GT 90159726 Upstream 60bp
chr9 139749902 139749902 1 + G A STAD 139749893 + 139749873 139749913 41 GCCCCCACAGAGGTGTCCACCCTGCAGCCGCTGCCTCCTGG GCCCCCACAGAGGTGTCCACCCTGCAGCCACTGCCTCCTGG < 41bp 1 0.0755609008118183 1 0.413055688142776 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139749893 chr9:139749902 synonymous SNV . 0 30 hm5C_associated_SNPs_37306 0 0 1 0 1 MAMDC4 chr9:139749883 3'AG 139749883 Downstream 20bp
chr5 179150668 179150668 1 + T C STAD 179150661 + 179150641 179150681 41 AGCCCTGTCTTGTTTTTCAGCCAGGCGTTGTGGGGCAGATG AGCCCTGTCTTGTTTTTCAGCCAGGCGCTGTGGGGCAGATG < 41bp 1 0.442034113403598 1 0.469599336385727 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179150661 chr5:179150668 nonsynonymous SNV 0.016 2 28 hm5C_associated_SNPs_37307 0 0 1 0 1 CANX chr5:179150661 3'AG 179150661 Downstream 8bp
chr5 179150668 179150668 1 + T C STAD 179150666 + 179150646 179150686 41 TGTCTTGTTTTTCAGCCAGGCGTTGTGGGGCAGATGATCGA TGTCTTGTTTTTCAGCCAGGCGCTGTGGGGCAGATGATCGA < 41bp 1 0.520394519961639 1 0.325943529605865 experiment 0.959210960076722 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179150666 chr5:179150668 nonsynonymous SNV 0.016 2 23 hm5C_associated_SNPs_37308 0 0 1 0 1 CANX chr5:179150661 3'AG 179150661 Downstream 8bp
chr5 179150668 179150668 1 + T C STAD 179150676 + 179150656 179150696 41 TTCAGCCAGGCGTTGTGGGGCAGATGATCGAGGCAGCTGAA TTCAGCCAGGCGCTGTGGGGCAGATGATCGAGGCAGCTGAA < 41bp 1 0.490651640247728 1 0.436599522829056 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179150676 chr5:179150668 nonsynonymous SNV 0.016 2 13 hm5C_associated_SNPs_37309 0 0 1 0 1 CANX chr5:179150661 3'AG 179150661 Downstream 8bp
chr3 127335932 127335932 1 + G T STAD 127335929 + 127335909 127335949 41 GGGCCCTGGTTCTGGCTGACCGAGGAGTGTGTCTCATTGAT GGGCCCTGGTTCTGGCTGACCGATGAGTGTGTCTCATTGAT < 41bp 1 0.320822969011091 1 0.385497808456421 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127335929 chr3:127335932 stopgain 0.896 1 24 hm5C_associated_SNPs_37310 0 0 1 0 1 MCM2 chr3:127335961 5'GT 127335961 Upstream 30bp
chr11 61488196 61488196 1 + G A STAD 61488204 + 61488184 61488224 41 GGTCTATAACCCGCACGAGGCCTGCTCCCTGAACCTGGTGG GGTCTATAACCCACACGAGGCCTGCTCCCTGAACCTGGTGG < 41bp 1 0.0345224383990205 1 0.0208265483379364 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61488204 chr11:61488196 synonymous SNV . 0 13 hm5C_associated_SNPs_37311 0 0 1 0 1 DAGLA chr11:61488151 3'AG 61488151 Downstream 46bp
chr19 49993758 49993758 1 + C T STAD 49993749 + 49993729 49993769 41 TAGTGAAGTACCTGGCTTTCCTCCGCAAGCGGATGAACACC TAGTGAAGTACCTGGCTTTCCTCCGCAAGTGGATGAACACC < 41bp 1 0.764482775166869 1 0.24812051653862 experiment 0.471034449666262 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993749 chr19:49993758 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_37312 0 0 1 0 2 RPL13A chr19:49993732 3'AG 49993732 Downstream 27bp
chr19 49993758 49993758 1 + C T STAD 49993749 + 49993729 49993769 41 TAGTGAAGTACCTGGCTTTCCTCCGCAAGCGGATGAACACC TAGTGAAGTACCTGGCTTTCCTCCGCAAGTGGATGAACACC < 41bp 1 0.764482775166869 1 0.24812051653862 experiment 0.471034449666262 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993749 chr19:49993758 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_37312 0 0 1 0 2 RPL13A chr19:49993833 5'GT 49993833 Upstream 76bp
chr13 113729379 113729379 1 + C T STAD 113729386 + 113729366 113729406 41 AACAAGCACTACGCGGTAGACTCCATCCGCCCAAAGTGCCA AACAAGCACTACGTGGTAGACTCCATCCGCCCAAAGTGCCA < 41bp 1 0.683457305546137 1 0.931654214859009 experiment 0.633085388907726 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113729386 chr13:113729379 nonsynonymous SNV 0.403 4 14 hm5C_associated_SNPs_37313 0 0 1 0 1 MCF2L chr13:113729312 3'AG 113729312 Downstream 68bp
chr11 9451349 9451349 1 + A G STAD 9451359 + 9451339 9451379 41 TGAAGAAGTTACTCCTATTGCAGTAGAAATGACACAACATT TGAAGAAGTTGCTCCTATTGCAGTAGAAATGACACAACATT < 41bp 1 0.598137048207831 1 0.629086375236511 experiment 0.803725903584337 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9451359 chr11:9451349 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_37315 0 0 1 0 1 IPO7 chr11:9451381 5'GT 9451381 Upstream 33bp
chr6 31713067 31713067 1 + G A STAD 31713049 + 31713029 31713069 41 TAAGAGTGAGTCTCACCCCTCAGTGTACAAAGTGGCCAGTG TAAGAGTGAGTCTCACCCCTCAGTGTACAAAGTGGCCAATG < 41bp 1 0.356184528147775 1 0.373444795608521 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MSH5 ENSG00000204410;ENSG00000255152 CDS Human other chr6:31713049 chr6:31713067 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_37316 0 0 1 0 1 MSH5 chr6:31713096 5'GT 31713096 Upstream 30bp
chr9 134354725 134354725 1 + C T STAD 134354717 + 134354697 134354737 41 AGAACAACTTATGTCTGGAGCAAGGTGACGTGACCGTGCCT AGAACAACTTATGTCTGGAGCAAGGTGATGTGACCGTGCCT < 41bp 1 0.324532230207404 1 0.773211240768433 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134354717 chr9:134354725 synonymous SNV . 0 29 hm5C_associated_SNPs_37317 0 0 1 0 1 PRRC2B chr9:134354639 3'AG 134354639 Downstream 87bp
chr9 134354725 134354725 1 + C T STAD 134354743 + 134354723 134354763 41 GACGTGACCGTGCCTGGCAGCAGCCTGGGCACTGAGATCTG GATGTGACCGTGCCTGGCAGCAGCCTGGGCACTGAGATCTG < 41bp 1 0.309619797565235 1 0.621980965137482 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134354743 chr9:134354725 synonymous SNV . 0 3 hm5C_associated_SNPs_37318 0 0 1 0 1 PRRC2B chr9:134354639 3'AG 134354639 Downstream 87bp
chr5 149925026 149925026 1 + A G STAD 149925006 + 149924986 149925026 41 CCCAAAGCCAAGGTCCTGACCATCCTCATCAACCCCGCGGA CCCAAAGCCAAGGTCCTGACCATCCTCATCAACCCCGCGGG < 41bp 1 0.147436076243773 1 0.0428634285926819 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDST1 ENSG00000070614 CDS Human protein_coding chr5:149925006 chr5:149925026 nonsynonymous SNV 0.995 4 41 hm5C_associated_SNPs_37319 0 0 1 0 1 NDST1 chr5:149925048 5'GT 149925048 Upstream 23bp
chr7 4823848 4823848 1 + C T STAD 4823834 + 4823814 4823854 41 CCTGCCTGTCCTTCCCACAGCCGGGCCCCGTCACCGAGGTG CCTGCCTGTCCTTCCCACAGCCGGGCCCCGTCACTGAGGTG < 41bp 1 0.336643966821656 1 0.653359055519104 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4823834 chr7:4823848 synonymous SNV . 0 35 hm5C_associated_SNPs_37322 0 0 1 0 1 AP5Z1 chr7:4823834 3'AG 4823834 Downstream 15bp
chr1 12061540 12061540 1 + G A STAD 12061544 + 12061524 12061564 41 TCCCAGGCCGGGGACCGCATCTTCTTTGTGTCTGCTAAGGA TCCCAGGCCGGGGACCACATCTTCTTTGTGTCTGCTAAGGA < 41bp 1 0.307612318663909 1 0.232191234827042 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061544 chr1:12061540 nonsynonymous SNV 0.943 2 17 hm5C_associated_SNPs_37328 0 0 1 0 2 MFN2 chr1:12061458 3'AG 12061458 Downstream 83bp
chr1 12061540 12061540 1 + G A STAD 12061544 + 12061524 12061564 41 TCCCAGGCCGGGGACCGCATCTTCTTTGTGTCTGCTAAGGA TCCCAGGCCGGGGACCACATCTTCTTTGTGTCTGCTAAGGA < 41bp 1 0.307612318663909 1 0.232191234827042 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061544 chr1:12061540 nonsynonymous SNV 0.943 2 17 hm5C_associated_SNPs_37328 0 0 1 0 2 MFN2 chr1:12061611 5'GT 12061611 Upstream 72bp
chr12 52635388 52635388 1 + C T STAD 52635378 + 52635358 52635398 41 GCGCAGTATGAGGAGATGGCCAAATGCAGCCGGGCTGAGGC GCGCAGTATGAGGAGATGGCCAAATGCAGCTGGGCTGAGGC < 41bp 1 0.32343431897121 1 0.658823847770691 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52635378 chr12:52635388 nonsynonymous SNV 0.964 1 31 hm5C_associated_SNPs_37330 0 0 0 0 1 KRT7 chr12:52635420 5'GT 52635420 Upstream 33bp
chr17 55191844 55191844 1 + G A STAD 55191830 + 55191810 55191850 41 CCCTCTACAGCTCATGCTGCCTGATGGCATCACCGTGGAGG CCCTCTACAGCTCATGCTGCCTGATGGCATCACCATGGAGG < 41bp 1 0.23091773814871 1 0.121356278657913 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55191830 chr17:55191844 nonsynonymous SNV 0.995 4 35 hm5C_associated_SNPs_37331 0 0 1 1 1 AKAP1 chr17:55191820 3'AG 55191820 Downstream 25bp
chr16 68104958 68104958 1 + C T STAD 68104973 + 68104953 68104993 41 TCTTCCTCAAGGAGGGTCTGCGGCCCCTGGAGGAGGTCATG TCTTCTTCAAGGAGGGTCTGCGGCCCCTGGAGGAGGTCATG < 41bp 1 0.223967672391383 1 0.536414206027985 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68104973 chr16:68104958 nonsynonymous SNV 0.993 2 6 hm5C_associated_SNPs_37332 0 0 1 0 1 DUS2 chr16:68105011 5'GT 68105011 Upstream 54bp
chr14 102466418 102466418 1 + G A STAD 102466414 + 102466394 102466434 41 GGACGACAGAGAGAAGTGTGCAAAGGCCAAGGAGGCGCTGG GGACGACAGAGAGAAGTGTGCAAAAGCCAAGGAGGCGCTGG < 41bp 1 0.292567612810829 1 0.453779608011246 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466414 chr14:102466418 synonymous SNV . 0 25 hm5C_associated_SNPs_37333 0 0 1 0 2 DYNC1H1 chr14:102466326 3'AG 102466326 Downstream 93bp
chr14 102466418 102466418 1 + G A STAD 102466414 + 102466394 102466434 41 GGACGACAGAGAGAAGTGTGCAAAGGCCAAGGAGGCGCTGG GGACGACAGAGAGAAGTGTGCAAAAGCCAAGGAGGCGCTGG < 41bp 1 0.292567612810829 1 0.453779608011246 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466414 chr14:102466418 synonymous SNV . 0 25 hm5C_associated_SNPs_37333 0 0 1 0 2 DYNC1H1 chr14:102466481 5'GT 102466481 Upstream 64bp
chr6 43110015 43110015 1 + G A STAD 43110021 + 43110001 43110041 41 AACATCAAGCACACGGAGGCCCCCCTCTATGTCGTGGGTAT AACATCAAGCACACAGAGGCCCCCCTCTATGTCGTGGGTAT < 41bp 1 0.0643036436261593 1 0.0610034763813019 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTK7 ENSG00000112655 CDS Human protein_coding chr6:43110021 chr6:43110015 synonymous SNV . 0 15 hm5C_associated_SNPs_37334 0 0 1 0 1 PTK7 chr6:43110037 5'GT 43110037 Upstream 23bp
chr11 57373915 57373915 1 + C A STAD 57373925 + 57373905 57373945 41 CCAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA CCAAGAAAACAAGAATGGAACCCTTTCACTTCAAAAACTCA < 41bp 1 0.0223763111114849 1 0.0559302866458893 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373925 chr11:57373915 synonymous SNV . 0 11 hm5C_associated_SNPs_37336 0 0 0 0 1 SERPING1 chr11:57373881 3'AG 57373881 Downstream 35bp
chr11 57373915 57373915 1 + C A STAD 57373926 + 57373906 57373946 41 CAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAG CAAGAAAACAAGAATGGAACCCTTTCACTTCAAAAACTCAG < 41bp 1 0.0107125082202018 1 0.112182140350342 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373926 chr11:57373915 synonymous SNV . 0 10 hm5C_associated_SNPs_37337 0 0 0 0 1 SERPING1 chr11:57373881 3'AG 57373881 Downstream 35bp
chr11 57373915 57373915 1 + C A STAD 57373927 + 57373907 57373947 41 AAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAGT AAGAAAACAAGAATGGAACCCTTTCACTTCAAAAACTCAGT < 41bp 1 0.0144416597387536 1 0.0627893507480621 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373927 chr11:57373915 synonymous SNV . 0 9 hm5C_associated_SNPs_37338 0 0 0 0 1 SERPING1 chr11:57373881 3'AG 57373881 Downstream 35bp
chr11 57373915 57373915 1 + C A STAD 57373933 + 57373913 57373953 41 ACCAGAATGGAACCCTTTCACTTCAAAAACTCAGTTATAAA ACAAGAATGGAACCCTTTCACTTCAAAAACTCAGTTATAAA < 41bp 1 0.47653651852675 1 0.421852052211761 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373933 chr11:57373915 synonymous SNV . 0 3 hm5C_associated_SNPs_37339 0 0 0 0 1 SERPING1 chr11:57373881 3'AG 57373881 Downstream 35bp
chr8 145139196 145139196 1 + G T STAD 145139185 + 145139165 145139205 41 CTTGACCTGCTCAATCTCTTCCAGACCTTCTGCCAGAAAGG CTTGACCTGCTCAATCTCTTCCAGACCTTCTTCCAGAAAGG < 41bp 1 0.555916207986288 1 0.265614032745361 experiment 0.888167584027424 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139185 chr8:145139196 nonsynonymous SNV 0.998 3 32 hm5C_associated_SNPs_37340 0 0 1 0 1 GPAA1 chr8:145139233 5'GT 145139233 Upstream 38bp
chr19 19654586 19654586 1 + A G STAD 19654593 + 19654573 19654613 41 CCTGCCTACCTGGATGTGGGCCTCTGTCCCGACACCCGCTG CCTGCCTACCTGGGTGTGGGCCTCTGTCCCGACACCCGCTG < 41bp 1 0.144427346145845 1 0.0580305457115173 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CILP2 ENSG00000160161 CDS Human protein_coding chr19:19654593 chr19:19654586 nonsynonymous SNV 0.018 2 14 hm5C_associated_SNPs_37341 0 0 0 0 1 CILP2 chr19:19654490 3'AG 19654490 Downstream 97bp
chr17 29560174 29560174 1 + T G STAD 29560175 + 29560155 29560195 41 TGGTCACAATGATGGGTGATCAAGGAGAACTCCCTATAGCG TGGTCACAATGATGGGTGAGCAAGGAGAACTCCCTATAGCG < 41bp 1 0.391118394905159 1 0.61098700761795 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29560175 chr17:29560174 nonsynonymous SNV 0.998 4 20 hm5C_associated_SNPs_37342 1 0 1 0 1 NF1 chr17:29560231 5'GT 29560231 Upstream 58bp
chr7 99702536 99702536 1 + C A STAD 99702547 + 99702527 99702567 41 GAGATTCGGCTCAAGAGCTTCCTTCCTAGCGGCTCTGGTGA GAGATTCGGATCAAGAGCTTCCTTCCTAGCGGCTCTGGTGA < 41bp 1 0.0184870683157214 1 0.0386918783187866 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99702547 chr7:99702536 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_37343 0 0 1 0 2 AP4M1 chr7:99702497 3'AG 99702497 Downstream 40bp
chr7 99702536 99702536 1 + C A STAD 99702547 + 99702527 99702567 41 GAGATTCGGCTCAAGAGCTTCCTTCCTAGCGGCTCTGGTGA GAGATTCGGATCAAGAGCTTCCTTCCTAGCGGCTCTGGTGA < 41bp 1 0.0184870683157214 1 0.0386918783187866 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99702547 chr7:99702536 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_37343 0 0 1 0 2 AP4M1 chr7:99702563 5'GT 99702563 Upstream 28bp
chr3 9488801 9488801 1 + G A STAD 9488809 + 9488789 9488829 41 AAAGAAAGAAGCGGCGGGATCAGCCCTTGGAACAGAGCAAC AAAGAAAGAAGCAGCGGGATCAGCCCTTGGAACAGAGCAAC < 41bp 1 0.296746685280123 1 0.50610214471817 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SETD5 ENSG00000168137 CDS Human protein_coding chr3:9488809 chr3:9488801 nonsynonymous SNV 0.984 5 13 hm5C_associated_SNPs_37345 0 0 1 0 1 SETD5 chr3:9488734 3'AG 9488734 Downstream 68bp
chr14 50789395 50789395 1 + G A STAD 50789391 + 50789371 50789411 41 AAATACAAGATTCAGGCGATCGACGCCACCGACTCTTGTAT AAATACAAGATTCAGGCGATCGACACCACCGACTCTTGTAT < 41bp 1 0.744732698110233 1 0.435795247554779 experiment 0.510534603779534 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP5S ENSG00000125375 CDS Human protein_coding chr14:50789391 chr14:50789395 nonsynonymous SNV 0.788 5 25 hm5C_associated_SNPs_37346 0 0 1 0 1 ATP5S chr14:50789437 5'GT 50789437 Upstream 43bp
chr14 50789395 50789395 1 + G A STAD 50789396 + 50789376 50789416 41 CAAGATTCAGGCGATCGACGCCACCGACTCTTGTATCATGA CAAGATTCAGGCGATCGACACCACCGACTCTTGTATCATGA < 41bp 1 0.0990432394347703 1 0.134363204240799 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP5S ENSG00000125375 CDS Human protein_coding chr14:50789396 chr14:50789395 nonsynonymous SNV 0.788 5 20 hm5C_associated_SNPs_37347 0 0 1 0 1 ATP5S chr14:50789437 5'GT 50789437 Upstream 43bp
chr19 48220236 48220236 1 + C T STAD 48220221 + 48220201 48220241 41 GCAACGCCCTCGTCGTGGACCCGGACAAGCCCTTCCGCAAA GCAACGCCCTCGTCGTGGACCCGGACAAGCCCTTCTGCAAA < 41bp 1 0.510093892277872 1 0.528717935085297 experiment 0.979812215444255 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EHD2 ENSG00000024422 CDS Human protein_coding chr19:48220221 chr19:48220236 nonsynonymous SNV 0.999 3 36 hm5C_associated_SNPs_37348 0 0 0 0 1 EHD2 chr19:48220273 5'GT 48220273 Upstream 38bp
chr19 14561788 14561788 1 + C T STAD 14561797 + 14561777 14561817 41 GGGGAGCTGCCCGCCGACCACCCCAAGGGGCGGCTGCTGCG GGGGAGCTGCCTGCCGACCACCCCAAGGGGCGGCTGCTGCG < 41bp 1 0.611174380603881 1 0.711009442806244 experiment 0.777651238792238 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14561797 chr19:14561788 synonymous SNV . 0 12 hm5C_associated_SNPs_37349 0 0 1 0 1 PKN1 chr19:14561708 3'AG 14561708 Downstream 81bp
chr22 24717327 24717327 1 + C T STAD 24717339 + 24717319 24717359 41 AAAGATTACGTGAACGTACCCGATTAAACCAGAGCAAAAAA AAAGATTATGTGAACGTACCCGATTAAACCAGAGCAAAAAA < 41bp 1 0.0901592036699122 1 0.185070604085922 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SPECC1L ENSG00000100014;ENSG00000258555 CDS Human other chr22:24717339 chr22:24717327 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_37350 0 0 1 0 1 SPECC1L chr22:24717256 3'AG 24717256 Downstream 72bp
chr4 152024210 152024210 1 + T C STAD 152024223 + 152024203 152024243 41 AATGACTTGAAAGAAGTGGTCAATAAATTGTAAGTGTTTCT AATGACTCGAAAGAAGTGGTCAATAAATTGTAAGTGTTTCT < 41bp 1 0.317160273053573 1 0.109282195568085 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RPS3A ENSG00000145425 CDS Human protein_coding chr4:152024223 chr4:152024210 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_37351 0 0 1 0 1 RPS3A chr4:152024231 5'GT 152024231 Upstream 22bp
chr2 203157521 203157521 1 + C T STAD 203157511 + 203157491 203157531 41 TTATACTAGGTGATTGAAATCTCTGAATATCGAACCCAGCT TTATACTAGGTGATTGAAATCTCTGAATATTGAACCCAGCT < 41bp 1 0.440788470611257 1 0.495489686727524 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOP58 ENSG00000055044 CDS Human protein_coding chr2:203157511 chr2:203157521 stopgain 0.997 1 31 hm5C_associated_SNPs_37352 0 0 1 0 1 NOP58 chr2:203157500 3'AG 203157500 Downstream 22bp
chr19 54632444 54632444 1 + G A STAD 54632459 + 54632439 54632479 41 AGGACGCCTACCAGGAGGACCTGGGATTCAGCCTGGGCCAC AGGACACCTACCAGGAGGACCTGGGATTCAGCCTGGGCCAC < 41bp 1 0.75606021179773 1 0.723577558994293 experiment 0.487879576404541 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54632459 chr19:54632444 nonsynonymous SNV 0.974 3 6 hm5C_associated_SNPs_37355 0 0 1 0 1 PRPF31 chr19:54632432 3'AG 54632432 Downstream 13bp
chr1 158063228 158063228 1 + G A STAD 158063221 + 158063201 158063241 41 CCTTGGTATTCTTCCTCTACCGGCGCCGCAAAGGCAGTGAG CCTTGGTATTCTTCCTCTACCGGCGCCACAAAGGCAGTGAG < 41bp 1 0.624399635535757 1 0.66811591386795 experiment 0.751200728928487 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063221 chr1:158063228 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_37356 0 0 0 0 2 KIRREL chr1:158063129 3'AG 158063129 Downstream 100bp
chr1 158063228 158063228 1 + G A STAD 158063221 + 158063201 158063241 41 CCTTGGTATTCTTCCTCTACCGGCGCCGCAAAGGCAGTGAG CCTTGGTATTCTTCCTCTACCGGCGCCACAAAGGCAGTGAG < 41bp 1 0.624399635535757 1 0.66811591386795 experiment 0.751200728928487 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063221 chr1:158063228 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_37356 0 0 0 0 2 KIRREL chr1:158063236 5'GT 158063236 Upstream 9bp
chr3 52233281 52233281 1 + C T STAD 52233278 + 52233258 52233298 41 ATGGAGAGTGTTGTTCGCCGCTGCCCATTCTTATCCCGAGT ATGGAGAGTGTTGTTCGCCGCTGTCCATTCTTATCCCGAGT < 41bp 1 0.163411850545844 1 0.238706797361374 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233278 chr3:52233281 synonymous SNV . 0 24 hm5C_associated_SNPs_37357 0 0 1 0 2 ALAS1 chr3:52233226 3'AG 52233226 Downstream 56bp
chr3 52233281 52233281 1 + C T STAD 52233278 + 52233258 52233298 41 ATGGAGAGTGTTGTTCGCCGCTGCCCATTCTTATCCCGAGT ATGGAGAGTGTTGTTCGCCGCTGTCCATTCTTATCCCGAGT < 41bp 1 0.163411850545844 1 0.238706797361374 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233278 chr3:52233281 synonymous SNV . 0 24 hm5C_associated_SNPs_37357 0 0 1 0 2 ALAS1 chr3:52233237 3'AG 52233237 Downstream 45bp
chr2 27302084 27302084 1 + C T STAD 27302064 + 27302044 27302084 41 GGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCC GGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCT < 41bp 1 0.281711220743662 1 0.605294644832611 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302064 chr2:27302084 nonsynonymous SNV 0.474 4 41 hm5C_associated_SNPs_37358 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 20bp
chr2 27302084 27302084 1 + C T STAD 27302065 + 27302045 27302085 41 GCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCG GCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCTG < 41bp 1 0.661206594124799 1 0.753865957260132 experiment 0.677586811750402 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302065 chr2:27302084 nonsynonymous SNV 0.474 4 40 hm5C_associated_SNPs_37359 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 20bp
chr2 27302084 27302084 1 + C T STAD 27302066 + 27302046 27302086 41 CCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCGG CCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCTGG < 41bp 1 0.606278341919771 1 0.84714686870575 experiment 0.787443316160459 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302066 chr2:27302084 nonsynonymous SNV 0.474 4 39 hm5C_associated_SNPs_37360 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 20bp
chr19 49619616 49619616 1 + G T STAD 49619603 + 49619583 49619623 41 AAGACGGATGAGGGCCTAGGCTTCAACATCATGGGTGGCAA AAGACGGATGAGGGCCTAGGCTTCAACATCATGTGTGGCAA < 41bp 1 0.673602381040258 1 0.552354574203491 experiment 0.652795237919484 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LIN7B ENSG00000104863 CDS Human protein_coding chr19:49619603 chr19:49619616 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_37361 0 0 0 0 1 LIN7B chr19:49619520 3'AG 49619520 Downstream 97bp
chr16 4902935 4902935 1 + G T STAD 4902930 + 4902910 4902950 41 TTGGTAGCCATGTCGGAGCCCCACAGGGTCCAGTTCACCTC TTGGTAGCCATGTCGGAGCCCCACATGGTCCAGTTCACCTC < 41bp 1 0.333229796373156 1 0.180012047290802 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN1 ENSG00000118900 CDS Human protein_coding chr16:4902930 chr16:4902935 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_37362 0 0 1 0 1 UBN1 chr16:4902880 3'AG 4902880 Downstream 56bp
chr3 37090086 37090086 1 + C T STAD 37090068 + 37090048 37090088 41 ATGTGCCCCCTTTGGAGGGACTGCCTATCTTCATTCTTCGA ATGTGCCCCCTTTGGAGGGACTGCCTATCTTCATTCTTTGA < 41bp 1 0.340295655963334 1 0.050257533788681 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MLH1 ENSG00000076242 CDS Human protein_coding chr3:37090068 chr3:37090086 stopgain 0.997 1 39 hm5C_associated_SNPs_37363 3 0 1 0 2 MLH1 chr3:37090008 3'AG 37090008 Downstream 79bp
chr3 37090086 37090086 1 + C T STAD 37090068 + 37090048 37090088 41 ATGTGCCCCCTTTGGAGGGACTGCCTATCTTCATTCTTCGA ATGTGCCCCCTTTGGAGGGACTGCCTATCTTCATTCTTTGA < 41bp 1 0.340295655963334 1 0.050257533788681 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MLH1 ENSG00000076242 CDS Human protein_coding chr3:37090068 chr3:37090086 stopgain 0.997 1 39 hm5C_associated_SNPs_37363 3 0 1 0 2 MLH1 chr3:37090100 5'GT 37090100 Upstream 15bp
chr19 47111800 47111800 1 + A C STAD 47111782 + 47111762 47111802 41 GAGTTCCTGACCATGATGGCCAGAAAGATGAAGGACACAGA GAGTTCCTGACCATGATGGCCAGAAAGATGAAGGACACCGA < 41bp 1 0.630237589740977 1 0.79326319694519 experiment 0.739524820518045 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111782 chr19:47111800 synonymous SNV . 0 39 hm5C_associated_SNPs_37364 0 0 1 0 2 CALM3 chr19:47111739 3'AG 47111739 Downstream 62bp
chr19 47111800 47111800 1 + A C STAD 47111782 + 47111762 47111802 41 GAGTTCCTGACCATGATGGCCAGAAAGATGAAGGACACAGA GAGTTCCTGACCATGATGGCCAGAAAGATGAAGGACACCGA < 41bp 1 0.630237589740977 1 0.79326319694519 experiment 0.739524820518045 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111782 chr19:47111800 synonymous SNV . 0 39 hm5C_associated_SNPs_37364 0 0 1 0 2 CALM3 chr19:47111845 5'GT 47111845 Upstream 46bp
chr19 47111800 47111800 1 + A C STAD 47111797 + 47111777 47111817 41 ATGGCCAGAAAGATGAAGGACACAGACAGTGAGGAGGAGAT ATGGCCAGAAAGATGAAGGACACCGACAGTGAGGAGGAGAT < 41bp 1 0.380175929828127 1 0.0627744793891907 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111797 chr19:47111800 synonymous SNV . 0 24 hm5C_associated_SNPs_37365 0 0 1 0 2 CALM3 chr19:47111739 3'AG 47111739 Downstream 62bp
chr19 47111800 47111800 1 + A C STAD 47111797 + 47111777 47111817 41 ATGGCCAGAAAGATGAAGGACACAGACAGTGAGGAGGAGAT ATGGCCAGAAAGATGAAGGACACCGACAGTGAGGAGGAGAT < 41bp 1 0.380175929828127 1 0.0627744793891907 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111797 chr19:47111800 synonymous SNV . 0 24 hm5C_associated_SNPs_37365 0 0 1 0 2 CALM3 chr19:47111845 5'GT 47111845 Upstream 46bp
chr19 47111800 47111800 1 + A C STAD 47111799 + 47111779 47111819 41 GGCCAGAAAGATGAAGGACACAGACAGTGAGGAGGAGATCC GGCCAGAAAGATGAAGGACACCGACAGTGAGGAGGAGATCC < 41bp 1 0.164655859868211 1 0.204160898923874 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111799 chr19:47111800 synonymous SNV . 0 22 hm5C_associated_SNPs_37366 0 0 1 0 2 CALM3 chr19:47111739 3'AG 47111739 Downstream 62bp
chr19 47111800 47111800 1 + A C STAD 47111799 + 47111779 47111819 41 GGCCAGAAAGATGAAGGACACAGACAGTGAGGAGGAGATCC GGCCAGAAAGATGAAGGACACCGACAGTGAGGAGGAGATCC < 41bp 1 0.164655859868211 1 0.204160898923874 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111799 chr19:47111800 synonymous SNV . 0 22 hm5C_associated_SNPs_37366 0 0 1 0 2 CALM3 chr19:47111845 5'GT 47111845 Upstream 46bp
chr19 47111800 47111800 1 + A C STAD 47111803 + 47111783 47111823 41 AGAAAGATGAAGGACACAGACAGTGAGGAGGAGATCCGAGA AGAAAGATGAAGGACACCGACAGTGAGGAGGAGATCCGAGA < 41bp 1 0.453748359453662 1 0.422207713127136 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111803 chr19:47111800 synonymous SNV . 0 18 hm5C_associated_SNPs_37367 0 0 1 0 2 CALM3 chr19:47111739 3'AG 47111739 Downstream 62bp
chr19 47111800 47111800 1 + A C STAD 47111803 + 47111783 47111823 41 AGAAAGATGAAGGACACAGACAGTGAGGAGGAGATCCGAGA AGAAAGATGAAGGACACCGACAGTGAGGAGGAGATCCGAGA < 41bp 1 0.453748359453662 1 0.422207713127136 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111803 chr19:47111800 synonymous SNV . 0 18 hm5C_associated_SNPs_37367 0 0 1 0 2 CALM3 chr19:47111845 5'GT 47111845 Upstream 46bp
chr21 48068520 48068520 1 + C T STAD 48068501 + 48068481 48068521 41 GGGACTGGGATCATCAGTCTCTTCTGTGCACACTATGCGCG GGGACTGGGATCATCAGTCTCTTCTGTGCACACTATGCGTG < 41bp 1 0.509886891538154 1 0.108373701572418 experiment 0.980226216923693 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48068501 chr21:48068520 nonsynonymous SNV 0.002 3 40 hm5C_associated_SNPs_37368 0 0 1 0 1 PRMT2 chr21:48068531 5'GT 48068531 Upstream 12bp
chr21 48068520 48068520 1 + C T STAD 48068504 + 48068484 48068524 41 ACTGGGATCATCAGTCTCTTCTGTGCACACTATGCGCGGCC ACTGGGATCATCAGTCTCTTCTGTGCACACTATGCGTGGCC < 41bp 1 0.689090095546424 1 0.673458874225616 experiment 0.621819808907152 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48068504 chr21:48068520 nonsynonymous SNV 0.002 3 37 hm5C_associated_SNPs_37369 0 0 1 0 1 PRMT2 chr21:48068531 5'GT 48068531 Upstream 12bp
chr10 71154810 71154810 1 + C T STAD 71154804 + 71154784 71154824 41 CCTCTTCCGAGGGCAGATCTCTGAGACGCTGAAGACCCGGG CCTCTTCCGAGGGCAGATCTCTGAGATGCTGAAGACCCGGG < 41bp 1 0.759006967651362 1 0.75306510925293 experiment 0.481986064697275 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HK1 ENSG00000156515 CDS Human protein_coding chr10:71154804 chr10:71154810 nonsynonymous SNV 0.995 3 27 hm5C_associated_SNPs_37371 0 0 1 0 1 HK1 chr10:71154861 5'GT 71154861 Upstream 52bp
chr11 812614 812614 1 + T G STAD 812631 + 812611 812651 41 TGCTGGTTCTGCCCCTGCTGCAGGTAAGTGGTGGCCTGGTG TGCGGGTTCTGCCCCTGCTGCAGGTAAGTGGTGGCCTGGTG < 41bp 1 0.721871646657564 1 0.798110485076904 experiment 0.556256706684872 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPLP2 ENSG00000177600 CDS Human protein_coding chr11:812631 chr11:812614 synonymous SNV . 0 4 hm5C_associated_SNPs_37372 0 0 1 0 2 RPLP2 chr11:812535 3'AG 812535 Downstream 80bp
chr11 812614 812614 1 + T G STAD 812631 + 812611 812651 41 TGCTGGTTCTGCCCCTGCTGCAGGTAAGTGGTGGCCTGGTG TGCGGGTTCTGCCCCTGCTGCAGGTAAGTGGTGGCCTGGTG < 41bp 1 0.721871646657564 1 0.798110485076904 experiment 0.556256706684872 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPLP2 ENSG00000177600 CDS Human protein_coding chr11:812631 chr11:812614 synonymous SNV . 0 4 hm5C_associated_SNPs_37372 0 0 1 0 2 RPLP2 chr11:812633 5'GT 812633 Upstream 20bp
chr19 36218396 36218396 1 + C A STAD 36218408 + 36218388 36218428 41 CTGCGGACCGTGTGCTGGGGCAGCGCAGCCCCGCTGGCGAG CTGCGGACAGTGTGCTGGGGCAGCGCAGCCCCGCTGGCGAG < 41bp 1 0.567012629172501 1 0.308539509773254 experiment 0.865974741654998 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36218408 chr19:36218396 nonsynonymous SNV 0.368 5 9 hm5C_associated_SNPs_37373 0 0 1 0 1 KMT2B chr19:36218339 3'AG 36218339 Downstream 58bp
chr17 29855737 29855737 1 + G A STAD 29855723 + 29855703 29855743 41 AGGCAGGGGCCGCAGTGCCTCCTCTGGCCTAGGCGAGTTCA AGGCAGGGGCCGCAGTGCCTCCTCTGGCCTAGGCAAGTTCA < 41bp 1 0.105862876084549 1 0.179492354393005 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAB11FIP4 ENSG00000131242 CDS Human protein_coding chr17:29855723 chr17:29855737 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_37374 0 0 1 0 2 RAB11FIP4 chr17:29855638 3'AG 29855638 Downstream 100bp
chr17 29855737 29855737 1 + G A STAD 29855723 + 29855703 29855743 41 AGGCAGGGGCCGCAGTGCCTCCTCTGGCCTAGGCGAGTTCA AGGCAGGGGCCGCAGTGCCTCCTCTGGCCTAGGCAAGTTCA < 41bp 1 0.105862876084549 1 0.179492354393005 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAB11FIP4 ENSG00000131242 CDS Human protein_coding chr17:29855723 chr17:29855737 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_37374 0 0 1 0 2 RAB11FIP4 chr17:29855796 5'GT 29855796 Upstream 60bp
chr11 63719965 63719965 1 + A G STAD 63719969 + 63719949 63719989 41 TACCTCATCGCGTGGGAAAACAGCTCCGTCCCTGTTGCCTT TACCTCATCGCGTGGGGAAACAGCTCCGTCCCTGTTGCCTT < 41bp 1 0.614360584619561 1 0.446462750434875 experiment 0.771278830760878 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAA40 ENSG00000110583 CDS Human protein_coding chr11:63719969 chr11:63719965 nonsynonymous SNV 0.988 1 17 hm5C_associated_SNPs_37375 0 0 1 0 2 NAA40 chr11:63719879 3'AG 63719879 Downstream 87bp
chr11 63719965 63719965 1 + A G STAD 63719969 + 63719949 63719989 41 TACCTCATCGCGTGGGAAAACAGCTCCGTCCCTGTTGCCTT TACCTCATCGCGTGGGGAAACAGCTCCGTCCCTGTTGCCTT < 41bp 1 0.614360584619561 1 0.446462750434875 experiment 0.771278830760878 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAA40 ENSG00000110583 CDS Human protein_coding chr11:63719969 chr11:63719965 nonsynonymous SNV 0.988 1 17 hm5C_associated_SNPs_37375 0 0 1 0 2 NAA40 chr11:63720037 5'GT 63720037 Upstream 73bp
chr12 111884621 111884621 1 + T C STAD 111884617 + 111884597 111884637 41 AGGAGGTCCGGTGGTGCACACGGCTTGAGATGCCTGACAAC AGGAGGTCCGGTGGTGCACACGGCCTGAGATGCCTGACAAC < 41bp 1 0.498670023887136 1 0.550092279911041 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH2B3 ENSG00000111252 CDS Human protein_coding chr12:111884617 chr12:111884621 nonsynonymous SNV 0.937 4 25 hm5C_associated_SNPs_37376 0 0 1 0 1 SH2B3 chr12:111884658 5'GT 111884658 Upstream 38bp
chr2 113950928 113950928 1 + G A STAD 113950934 + 113950914 113950954 41 CACCATTGCAATCCGGGGATCTTCCCCTCAGTAGGTAGGGA CACCATTGCAATCCAGGGATCTTCCCCTCAGTAGGTAGGGA < 41bp 1 0.0428029463203224 1 0.0771482586860657 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950934 chr2:113950928 synonymous SNV . 0 15 hm5C_associated_SNPs_37377 0 0 0 0 2 PSD4 chr2:113950835 3'AG 113950835 Downstream 94bp
chr2 113950928 113950928 1 + G A STAD 113950934 + 113950914 113950954 41 CACCATTGCAATCCGGGGATCTTCCCCTCAGTAGGTAGGGA CACCATTGCAATCCAGGGATCTTCCCCTCAGTAGGTAGGGA < 41bp 1 0.0428029463203224 1 0.0771482586860657 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950934 chr2:113950928 synonymous SNV . 0 15 hm5C_associated_SNPs_37377 0 0 0 0 2 PSD4 chr2:113950947 5'GT 113950947 Upstream 20bp
chr17 43220904 43220904 1 + G A STAD 43220912 + 43220892 43220932 41 TCGTCGTCCAGTGGCTCTTCCGAATGTTTCGGACCCAAAAG TCGTCGTCCAGTAGCTCTTCCGAATGTTTCGGACCCAAAAG < 41bp 1 0.318591038215172 1 0.78833794593811 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43220912 chr17:43220904 stopgain 1.000 3 13 hm5C_associated_SNPs_37378 0 0 1 0 1 ACBD4 chr17:43220810 3'AG 43220810 Downstream 95bp
chr6 33638163 33638163 1 + A C STAD 33638147 + 33638127 33638167 41 ATGTGCTTGGACCGCCAGTACTTGGCCATCGACGAGATCTC ATGTGCTTGGACCGCCAGTACTTGGCCATCGACGAGCTCTC < 41bp 1 0.345133202587872 1 0.299628853797913 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33638147 chr6:33638163 nonsynonymous SNV 0.993 2 37 hm5C_associated_SNPs_37379 0 0 1 0 1 ITPR3 chr6:33638102 3'AG 33638102 Downstream 62bp
chr20 32665017 32665017 1 + A G STAD 32664999 + 32664979 32665019 41 GCCCCAGGGGGAAGCACGGACCCGAGACGACGGCGATGAGG GCCCCAGGGGGAAGCACGGACCCGAGACGACGGCGATGGGG < 41bp 1 0.79891031057624 1 0.504646182060242 experiment 0.40217937884752 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32664999 chr20:32665017 nonsynonymous SNV 0.984 3 39 hm5C_associated_SNPs_37380 0 0 1 0 1 RALY chr20:32665051 5'GT 32665051 Upstream 35bp
chr20 32665017 32665017 1 + A G STAD 32665000 + 32664980 32665020 41 CCCCAGGGGGAAGCACGGACCCGAGACGACGGCGATGAGGA CCCCAGGGGGAAGCACGGACCCGAGACGACGGCGATGGGGA < 41bp 1 0.353893884544535 1 0.598012983798981 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32665000 chr20:32665017 nonsynonymous SNV 0.984 3 38 hm5C_associated_SNPs_37381 0 0 1 0 1 RALY chr20:32665051 5'GT 32665051 Upstream 35bp
chr20 32665017 32665017 1 + A G STAD 32665025 + 32665005 32665045 41 ACGACGGCGATGAGGAAGGGCTCCTGACACACAGCGAGGAA ACGACGGCGATGGGGAAGGGCTCCTGACACACAGCGAGGAA < 41bp 1 0.623330386815337 1 0.223606914281845 experiment 0.753339226369325 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32665025 chr20:32665017 nonsynonymous SNV 0.984 3 13 hm5C_associated_SNPs_37382 0 0 1 0 1 RALY chr20:32665051 5'GT 32665051 Upstream 35bp
chr20 32665017 32665017 1 + A G STAD 32665027 + 32665007 32665047 41 GACGGCGATGAGGAAGGGCTCCTGACACACAGCGAGGAAGA GACGGCGATGGGGAAGGGCTCCTGACACACAGCGAGGAAGA < 41bp 1 0.556987401975307 1 0.139359831809998 experiment 0.886025196049387 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32665027 chr20:32665017 nonsynonymous SNV 0.984 3 11 hm5C_associated_SNPs_37383 0 0 1 0 1 RALY chr20:32665051 5'GT 32665051 Upstream 35bp
chr20 32665017 32665017 1 + A G STAD 32665034 + 32665014 32665054 41 ATGAGGAAGGGCTCCTGACACACAGCGAGGAAGAGCTGGTG ATGGGGAAGGGCTCCTGACACACAGCGAGGAAGAGCTGGTG < 41bp 1 0.753249507679099 1 0.168055891990662 experiment 0.493500984641803 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32665034 chr20:32665017 nonsynonymous SNV 0.984 3 4 hm5C_associated_SNPs_37384 0 0 1 0 1 RALY chr20:32665051 5'GT 32665051 Upstream 35bp
chr20 57484813 57484813 1 + C T STAD 57484828 + 57484808 57484848 41 CCAACCGCCTGCAGGAGGCTCTGAACCTCTTCAAGAGCATC CCAACTGCCTGCAGGAGGCTCTGAACCTCTTCAAGAGCATC < 41bp 1 0.393208834448158 1 0.16646683216095 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNAS ENSG00000087460 CDS Human protein_coding chr20:57484828 chr20:57484813 nonsynonymous SNV 1.000 5 6 hm5C_associated_SNPs_37385 0 0 1 0 2 GNAS chr20:57484739 3'AG 57484739 Downstream 75bp
chr20 57484813 57484813 1 + C T STAD 57484828 + 57484808 57484848 41 CCAACCGCCTGCAGGAGGCTCTGAACCTCTTCAAGAGCATC CCAACTGCCTGCAGGAGGCTCTGAACCTCTTCAAGAGCATC < 41bp 1 0.393208834448158 1 0.16646683216095 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNAS ENSG00000087460 CDS Human protein_coding chr20:57484828 chr20:57484813 nonsynonymous SNV 1.000 5 6 hm5C_associated_SNPs_37385 0 0 1 0 2 GNAS chr20:57484859 5'GT 57484859 Upstream 47bp
chr7 100484525 100484525 1 + A G STAD 100484519 + 100484499 100484539 41 GGGGAGCAGCGGGGGCGCTCCTCCTGAGGAGCCTCCTAAGG GGGGAGCAGCGGGGGCGCTCCTCCTGGGGAGCCTCCTAAGG < 41bp 1 0.689666542575244 1 0.842313766479492 experiment 0.620666914849511 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100484519 chr7:100484525 nonsynonymous SNV 0.938 2 27 hm5C_associated_SNPs_37388 0 0 1 0 1 SRRT chr7:100484589 5'GT 100484589 Upstream 65bp
chr17 79412070 79412070 1 + C T STAD 79412071 + 79412051 79412091 41 GGACCAGGCGTCACTGTGGCCCCCCATGTACGGGGGCCGGG GGACCAGGCGTCACTGTGGTCCCCCATGTACGGGGGCCGGG < 41bp 1 0.0802558995137199 1 0.127069771289825 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412071 chr17:79412070 nonsynonymous SNV 0.997 0 20 hm5C_associated_SNPs_37389 0 0 0 0 1 BAHCC1 chr17:79412041 3'AG 79412041 Downstream 30bp
chr17 79412070 79412070 1 + C T STAD 79412072 + 79412052 79412092 41 GACCAGGCGTCACTGTGGCCCCCCATGTACGGGGGCCGGGG GACCAGGCGTCACTGTGGTCCCCCATGTACGGGGGCCGGGG < 41bp 1 0.19429555765652 1 0.416569352149963 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412072 chr17:79412070 nonsynonymous SNV 0.997 0 19 hm5C_associated_SNPs_37390 0 0 0 0 1 BAHCC1 chr17:79412041 3'AG 79412041 Downstream 30bp
chr17 79412070 79412070 1 + C T STAD 79412073 + 79412053 79412093 41 ACCAGGCGTCACTGTGGCCCCCCATGTACGGGGGCCGGGGC ACCAGGCGTCACTGTGGTCCCCCATGTACGGGGGCCGGGGC < 41bp 1 0.149286776922816 1 0.33502858877182 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412073 chr17:79412070 nonsynonymous SNV 0.997 0 18 hm5C_associated_SNPs_37391 0 0 0 0 1 BAHCC1 chr17:79412041 3'AG 79412041 Downstream 30bp
chr17 79412070 79412070 1 + C T STAD 79412074 + 79412054 79412094 41 CCAGGCGTCACTGTGGCCCCCCATGTACGGGGGCCGGGGCC CCAGGCGTCACTGTGGTCCCCCATGTACGGGGGCCGGGGCC < 41bp 1 0.0721658276231451 1 0.100743770599365 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412074 chr17:79412070 nonsynonymous SNV 0.997 0 17 hm5C_associated_SNPs_37392 0 0 0 0 1 BAHCC1 chr17:79412041 3'AG 79412041 Downstream 30bp
chr17 79412070 79412070 1 + C T STAD 79412087 + 79412067 79412107 41 TGGCCCCCCATGTACGGGGGCCGGGGCCCCGCCTCTCACAT TGGTCCCCCATGTACGGGGGCCGGGGCCCCGCCTCTCACAT < 41bp 1 0.173607997317301 1 0.558542430400848 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412087 chr17:79412070 nonsynonymous SNV 0.997 0 4 hm5C_associated_SNPs_37393 0 0 0 0 1 BAHCC1 chr17:79412041 3'AG 79412041 Downstream 30bp
chr17 79412070 79412070 1 + C T STAD 79412088 + 79412068 79412108 41 GGCCCCCCATGTACGGGGGCCGGGGCCCCGCCTCTCACATG GGTCCCCCATGTACGGGGGCCGGGGCCCCGCCTCTCACATG < 41bp 1 0.408418888223341 1 0.455193042755127 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412088 chr17:79412070 nonsynonymous SNV 0.997 0 3 hm5C_associated_SNPs_37394 0 0 0 0 1 BAHCC1 chr17:79412041 3'AG 79412041 Downstream 30bp
chr8 28608180 28608180 1 + T G STAD 28608178 + 28608158 28608198 41 TCTCTCCCGTTTCCAGGTGACCTCACGGTGGACATTCCGAT TCTCTCCCGTTTCCAGGTGACCGCACGGTGGACATTCCGAT < 41bp 1 0.265040811767319 1 0.0761627852916718 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EXTL3 ENSG00000012232 CDS Human protein_coding chr8:28608178 chr8:28608180 nonsynonymous SNV 0.349 4 23 hm5C_associated_SNPs_37395 0 0 1 0 1 EXTL3 chr8:28608174 3'AG 28608174 Downstream 7bp
chr8 21844781 21844781 1 + C A STAD 21844767 + 21844747 21844787 41 GTAAGATCTACATTGGGGACCAAGTGCAGAAATCCTCTAAG GTAAGATCTACATTGGGGACCAAGTGCAGAAATCATCTAAG < 41bp 1 0.290542547068931 1 0.438777536153793 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21844767 chr8:21844781 synonymous SNV . 0 35 hm5C_associated_SNPs_37396 0 0 1 0 1 XPO7 chr8:21844787 5'GT 21844787 Upstream 7bp
chr10 7745425 7745425 1 + T A STAD 7745438 + 7745418 7745458 41 TTTCATCTGCTTCTTTCTTTCTGAAGTATCAGGCTTCGAAA TTTCATCAGCTTCTTTCTTTCTGAAGTATCAGGCTTCGAAA < 41bp 1 0.778017886329846 1 0.805368065834045 experiment 0.443964227340309 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7745438 chr10:7745425 nonsynonymous SNV 0.096 0 8 hm5C_associated_SNPs_37397 0 0 1 0 1 ITIH2 chr10:7745481 5'GT 7745481 Upstream 57bp
chr5 102360935 102360935 1 + G A STAD 102360927 + 102360907 102360947 41 AACAGAAACTGATCAAAGAGCCAGGCTCGGGAGTGCCTGTT AACAGAAACTGATCAAAGAGCCAGGCTCAGGAGTGCCTGTT < 41bp 1 0.335258099996855 1 0.818360447883606 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PAM ENSG00000145730 CDS Human protein_coding chr5:102360927 chr5:102360935 synonymous SNV . 0 29 hm5C_associated_SNPs_37398 0 0 0 0 1 PAM chr5:102360838 3'AG 102360838 Downstream 98bp
chr20 39741495 39741495 1 + A G STAD 39741484 + 39741464 39741504 41 AAAAAATGTGTGGACAAGATCCGGAACCAGTATCGAGAAGA AAAAAATGTGTGGACAAGATCCGGAACCAGTGTCGAGAAGA < 41bp 1 0.777204482939176 1 0.162634670734406 experiment 0.445591034121648 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39741484 chr20:39741495 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_37401 0 0 1 0 1 TOP1 chr20:39741565 5'GT 39741565 Upstream 71bp
chr20 57246312 57246312 1 + A G STAD 57246308 + 57246288 57246328 41 ATTGTACAGTCCATTTCTGACCTGAATGAAATATTCAGGGA ATTGTACAGTCCATTTCTGACCTGGATGAAATATTCAGGGA < 41bp 1 0.324527725220981 1 0.28726065158844 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control STX16 ENSG00000124222;ENSG00000254995 CDS Human other chr20:57246308 chr20:57246312 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_37402 0 0 1 0 1 STX16 chr20:57246353 5'GT 57246353 Upstream 42bp
chr9 139887678 139887678 1 + T C STAD 139887676 + 139887656 139887696 41 CTGGCAAAACGCGTGTGGAGCCTGGAGCGGCGACTGGCAGG CTGGCAAAACGCGTGTGGAGCCCGGAGCGGCGACTGGCAGG < 41bp 1 0.604150093459396 1 0.147839337587357 experiment 0.791699813081209 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887676 chr9:139887678 nonsynonymous SNV 0.010 4 23 hm5C_associated_SNPs_37407 0 0 1 0 1 C9orf142 chr9:139887695 5'GT 139887695 Upstream 18bp
chr9 139887678 139887678 1 + T C STAD 139887689 + 139887669 139887709 41 TGTGGAGCCTGGAGCGGCGACTGGCAGGTAGGATTGGGGGT TGTGGAGCCCGGAGCGGCGACTGGCAGGTAGGATTGGGGGT < 41bp 1 0.551348868069741 1 0.3314448595047 experiment 0.897302263860519 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887689 chr9:139887678 nonsynonymous SNV 0.010 4 10 hm5C_associated_SNPs_37408 0 0 1 0 1 C9orf142 chr9:139887695 5'GT 139887695 Upstream 18bp
chr11 86947719 86947719 1 + T G STAD 86947706 + 86947686 86947726 41 TTGTTTTGCATCACAGCTGCCATGTACATGTTCTTTTTCAG TTGTTTTGCATCACAGCTGCCATGTACATGTTCGTTTTCAG < 41bp 1 0.0482409749267714 1 0.0361525118350983 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM135 ENSG00000166575 CDS Human protein_coding chr11:86947706 chr11:86947719 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_37410 0 0 1 0 2 TMEM135 chr11:86947680 3'AG 86947680 Downstream 40bp
chr11 86947719 86947719 1 + T G STAD 86947706 + 86947686 86947726 41 TTGTTTTGCATCACAGCTGCCATGTACATGTTCTTTTTCAG TTGTTTTGCATCACAGCTGCCATGTACATGTTCGTTTTCAG < 41bp 1 0.0482409749267714 1 0.0361525118350983 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM135 ENSG00000166575 CDS Human protein_coding chr11:86947706 chr11:86947719 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_37410 0 0 1 0 2 TMEM135 chr11:86947726 5'GT 86947726 Upstream 8bp
chr7 142460323 142460323 1 + C T STAD 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGTTGAG < 41bp 1 0.190803645518215 1 0.0865569412708282 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460323 synonymous SNV . 0 37 hm5C_associated_SNPs_37412 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 42bp
chr7 142460323 142460323 1 + C T STAD 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGTTGAG < 41bp 1 0.190803645518215 1 0.0865569412708282 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460323 synonymous SNV . 0 37 hm5C_associated_SNPs_37412 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 96bp
chr7 142460323 142460323 1 + C T STAD 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGGATGCTCCTGTGTTGAGCCAGGCTA < 41bp 1 0.431394147314212 1 0.0903672873973846 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460323 synonymous SNV . 0 29 hm5C_associated_SNPs_37413 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 42bp
chr7 142460323 142460323 1 + C T STAD 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGGATGCTCCTGTGTTGAGCCAGGCTA < 41bp 1 0.431394147314212 1 0.0903672873973846 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460323 synonymous SNV . 0 29 hm5C_associated_SNPs_37413 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 96bp
chr7 142460323 142460323 1 + C T STAD 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGGATGCTCCTGTGTTGAGCCAGGCTAAG < 41bp 1 0.272710189520561 1 0.170773476362228 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460323 synonymous SNV . 0 27 hm5C_associated_SNPs_37414 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 42bp
chr7 142460323 142460323 1 + C T STAD 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGGATGCTCCTGTGTTGAGCCAGGCTAAG < 41bp 1 0.272710189520561 1 0.170773476362228 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460323 synonymous SNV . 0 27 hm5C_associated_SNPs_37414 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 96bp
chr7 142460323 142460323 1 + C T STAD 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGGATGCTCCTGTGTTGAGCCAGGCTAAGT < 41bp 1 0.544550326721914 1 0.207855075597763 experiment 0.910899346556171 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460323 synonymous SNV . 0 26 hm5C_associated_SNPs_37415 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 42bp
chr7 142460323 142460323 1 + C T STAD 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGGATGCTCCTGTGTTGAGCCAGGCTAAGT < 41bp 1 0.544550326721914 1 0.207855075597763 experiment 0.910899346556171 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460323 synonymous SNV . 0 26 hm5C_associated_SNPs_37415 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 96bp
chr7 142460323 142460323 1 + C T STAD 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTCCTGTGTTGAGCCAGGCTAAGTGTGAAGCCTC < 41bp 1 0.381296991707811 1 0.29138445854187 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460323 synonymous SNV . 0 16 hm5C_associated_SNPs_37416 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 42bp
chr7 142460323 142460323 1 + C T STAD 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTCCTGTGTTGAGCCAGGCTAAGTGTGAAGCCTC < 41bp 1 0.381296991707811 1 0.29138445854187 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460323 synonymous SNV . 0 16 hm5C_associated_SNPs_37416 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 96bp
chr7 142460323 142460323 1 + C T STAD 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTCCTGTGTTGAGCCAGGCTAAGTGTGAAGCCTCC < 41bp 1 0.511904179150806 1 0.342397391796112 experiment 0.976191641698389 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460323 synonymous SNV . 0 15 hm5C_associated_SNPs_37417 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 42bp
chr7 142460323 142460323 1 + C T STAD 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTCCTGTGTTGAGCCAGGCTAAGTGTGAAGCCTCC < 41bp 1 0.511904179150806 1 0.342397391796112 experiment 0.976191641698389 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460323 synonymous SNV . 0 15 hm5C_associated_SNPs_37417 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 96bp
chr7 142460323 142460323 1 + C T STAD 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTGTGTTGAGCCAGGCTAAGTGTGAAGCCTCCTACC < 41bp 1 0.39169745600719 1 0.11300265789032 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460323 synonymous SNV . 0 11 hm5C_associated_SNPs_37418 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 42bp
chr7 142460323 142460323 1 + C T STAD 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTGTGTTGAGCCAGGCTAAGTGTGAAGCCTCCTACC < 41bp 1 0.39169745600719 1 0.11300265789032 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460323 synonymous SNV . 0 11 hm5C_associated_SNPs_37418 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 96bp
chr5 131953957 131953957 1 + T G STAD 131953938 + 131953918 131953958 41 GATGATTGTTATGAGGACAACAGAACTTGTGAACAAGGATC GATGATTGTTATGAGGACAACAGAACTTGTGAACAAGGAGC < 41bp 1 0.464402822607742 1 0.493989050388336 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131953938 chr5:131953957 nonsynonymous SNV 0.999 3 40 hm5C_associated_SNPs_37419 0 0 1 0 1 RAD50 chr5:131953986 5'GT 131953986 Upstream 30bp
chr19 58369951 58369951 1 + G A STAD 58369959 + 58369939 58369979 41 TTCAGGTTGTTGGTGTGGATCAAAAGATGAGGAGGCACCTT TTCAGGTTGTTGATGTGGATCAAAAGATGAGGAGGCACCTT < 41bp 1 0.601740190733595 1 0.568367540836334 experiment 0.796519618532809 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF587 ENSG00000198466;ENSG00000268750 CDS Human other chr19:58369959 chr19:58369951 stopgain 0.039 0 13 hm5C_associated_SNPs_37421 0 0 0 0 1 ZNF587 chr19:58369944 3'AG 58369944 Downstream 8bp
chr11 73638354 73638354 1 + T C STAD 73638335 + 73638315 73638355 41 ATTCTTGTGTTTTAGGTAGCCACATGGGAGAAGCAGATCTA ATTCTTGTGTTTTAGGTAGCCACATGGGAGAAGCAGATCCA < 41bp 1 0.598338519843431 1 0.856364548206329 experiment 0.803322960313137 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PAAF1 ENSG00000175575 CDS Human protein_coding chr11:73638335 chr11:73638354 nonsynonymous SNV 0.972 4 40 hm5C_associated_SNPs_37422 0 0 1 0 1 PAAF1 chr11:73638330 3'AG 73638330 Downstream 25bp
chr16 3707235 3707235 1 + A G STAD 3707253 + 3707233 3707273 41 AGACCCTCCCAGTGGTCATCCATCCGCCTGTGGACAAGCCC AGGCCCTCCCAGTGGTCATCCATCCGCCTGTGGACAAGCCC < 41bp 1 0.150374189378848 1 0.070111095905304 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707253 chr16:3707235 synonymous SNV . 0 3 hm5C_associated_SNPs_37423 0 0 1 0 1 DNASE1 chr16:3707188 3'AG 3707188 Downstream 48bp
chr19 14040219 14040219 1 + T C STAD 14040234 + 14040214 14040254 41 CTCAGTGTGCTGGCGTTTGACCAAGAGCGTCTGGAGCGGAA CTCAGCGTGCTGGCGTTTGACCAAGAGCGTCTGGAGCGGAA < 41bp 1 0.373724959478981 1 0.499682188034058 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14040234 chr19:14040219 synonymous SNV . 0 6 hm5C_associated_SNPs_37424 0 0 0 0 2 CC2D1A chr19:14040192 3'AG 14040192 Downstream 28bp
chr19 14040219 14040219 1 + T C STAD 14040234 + 14040214 14040254 41 CTCAGTGTGCTGGCGTTTGACCAAGAGCGTCTGGAGCGGAA CTCAGCGTGCTGGCGTTTGACCAAGAGCGTCTGGAGCGGAA < 41bp 1 0.373724959478981 1 0.499682188034058 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14040234 chr19:14040219 synonymous SNV . 0 6 hm5C_associated_SNPs_37424 0 0 0 0 2 CC2D1A chr19:14040255 5'GT 14040255 Upstream 37bp
chr12 113730874 113730874 1 + A G STAD 113730854 + 113730834 113730874 41 GTCACCAGGCTGCTGGAGACCCTCTCCCAGATGGAGAGATA GTCACCAGGCTGCTGGAGACCCTCTCCCAGATGGAGAGATG < 41bp 1 0.0933643465006324 1 0.0411652624607086 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113730854 chr12:113730874 nonsynonymous SNV 0.676 0 41 hm5C_associated_SNPs_37425 0 0 0 0 1 TPCN1 chr12:113730878 5'GT 113730878 Upstream 5bp
chr5 172386967 172386967 1 + T C STAD 172386963 + 172386943 172386983 41 TCACACGTGCGCAGGAAGATCATGTCATCCCCGCTCTCCAA TCACACGTGCGCAGGAAGATCATGCCATCCCCGCTCTCCAA < 41bp 1 0.700593134351955 1 0.138787358999252 experiment 0.598813731296091 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL26L1 ENSG00000037241 CDS Human protein_coding chr5:172386963 chr5:172386967 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_37426 0 0 0 0 2 RPL26L1 chr5:172386868 3'AG 172386868 Downstream 100bp
chr5 172386967 172386967 1 + T C STAD 172386963 + 172386943 172386983 41 TCACACGTGCGCAGGAAGATCATGTCATCCCCGCTCTCCAA TCACACGTGCGCAGGAAGATCATGCCATCCCCGCTCTCCAA < 41bp 1 0.700593134351955 1 0.138787358999252 experiment 0.598813731296091 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL26L1 ENSG00000037241 CDS Human protein_coding chr5:172386963 chr5:172386967 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_37426 0 0 0 0 2 RPL26L1 chr5:172387044 5'GT 172387044 Upstream 78bp
chr12 51034587 51034587 1 + T C STAD 51034590 + 51034570 51034610 41 CTTCTGCTCCCTCTAAGTACCACCGAACTCGATCTGGGGGA CTTCTGCTCCCTCTAAGCACCACCGAACTCGATCTGGGGGA < 41bp 1 0.547310720904926 1 0.609231293201447 experiment 0.905378558190149 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51034590 chr12:51034587 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_37427 0 0 1 0 1 DIP2B chr12:51034635 5'GT 51034635 Upstream 49bp
chr7 64531410 64531410 1 + T C STAD 64531408 + 64531388 64531428 41 GCATTTGCTGATGCGTTGCTCGTTATTCCCAAGGTGTGTAT GCATTTGCTGATGCGTTGCTCGCTATTCCCAAGGTGTGTAT < 41bp 1 0.702773217453853 1 0.212803870439529 experiment 0.594453565092294 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCT6P3 ENSG00000234585 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64531408 chr7:64531410 . . 0 23 hm5C_associated_SNPs_37428 0 0 1 0 1 CCT6P3 chr7:64531420 5'GT 64531420 Upstream 11bp
chr6 31594921 31594921 1 + A G STAD 31594939 + 31594919 31594959 41 CTACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC CTGCCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC < 41bp 1 0.304513350024619 1 0.114459246397018 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594939 chr6:31594921 synonymous SNV . 0 3 hm5C_associated_SNPs_37429 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 55bp
chr6 31594921 31594921 1 + A G STAD 31594940 + 31594920 31594960 41 TACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC TGCCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC < 41bp 1 0.290950314155276 1 0.107025772333145 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594940 chr6:31594921 synonymous SNV . 0 2 hm5C_associated_SNPs_37430 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 55bp
chr6 31594921 31594921 1 + A G STAD 31594941 + 31594921 31594961 41 ACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC GCCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC < 41bp 1 0.340082062171357 1 0.202972680330276 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594941 chr6:31594921 synonymous SNV . 0 1 hm5C_associated_SNPs_37431 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 55bp
chr19 50921195 50921195 1 + G T STAD 50921206 + 50921186 50921226 41 TGGACCTGAGGCCTGGTGACCTTGCAAGCATCCCATGGGGC TGGACCTGATGCCTGGTGACCTTGCAAGCATCCCATGGGGC < 41bp 1 0.214420253412441 1 0.0842567384243011 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50921206 chr19:50921195 nonsynonymous SNV 0.942 0 10 hm5C_associated_SNPs_37432 0 0 1 0 1 POLD1 chr19:50921099 3'AG 50921099 Downstream 97bp
chr2 176988303 176988303 1 + A G STAD 176988301 + 176988281 176988321 41 ATTCGCAGCCGCAGCAGCAGCAACTTGACCCAAGTAAGTGC ATTCGCAGCCGCAGCAGCAGCAGCTTGACCCAAGTAAGTGC < 41bp 1 0.360375834580422 1 0.259967088699341 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HOXD9 ENSG00000128709 CDS Human protein_coding chr2:176988301 chr2:176988303 synonymous SNV . 0 23 hm5C_associated_SNPs_37433 0 0 0 0 1 HOXD9 chr2:176988313 5'GT 176988313 Upstream 11bp
chr6 30887979 30887979 1 + G A STAD 30887972 + 30887952 30887992 41 GAGGATGGGACCATGACCTCCCTCTGCGGGGACTGGCTGCA GAGGATGGGACCATGACCTCCCTCTGCAGGGACTGGCTGCA < 41bp 1 0.111514821612648 1 0.172208249568939 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VARS2 ENSG00000137411 CDS Human protein_coding chr6:30887972 chr6:30887979 nonsynonymous SNV 0.937 3 28 hm5C_associated_SNPs_37434 0 0 1 0 1 VARS2 chr6:30887993 5'GT 30887993 Upstream 15bp
chr10 104129985 104129985 1 + C T STAD 104129996 + 104129976 104130016 41 CTGGAGTCACTACAGGAGCTCATGAAGGTAAAGGATGAAGA CTGGAGTCATTACAGGAGCTCATGAAGGTAAAGGATGAAGA < 41bp 1 0.220938365478929 1 0.203283339738846 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129996 chr10:104129985 synonymous SNV . 0 10 hm5C_associated_SNPs_37436 0 0 0 0 2 GBF1 chr10:104129931 3'AG 104129931 Downstream 55bp
chr10 104129985 104129985 1 + C T STAD 104129996 + 104129976 104130016 41 CTGGAGTCACTACAGGAGCTCATGAAGGTAAAGGATGAAGA CTGGAGTCATTACAGGAGCTCATGAAGGTAAAGGATGAAGA < 41bp 1 0.220938365478929 1 0.203283339738846 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129996 chr10:104129985 synonymous SNV . 0 10 hm5C_associated_SNPs_37436 0 0 0 0 2 GBF1 chr10:104130002 5'GT 104130002 Upstream 18bp
chr3 9775910 9775910 1 + G A STAD 9775905 + 9775885 9775925 41 TACGAGTGCCCGGTGGAGACCTGCCGAAAGGTCTACAAGAG TACGAGTGCCCGGTGGAGACCTGCCAAAAGGTCTACAAGAG < 41bp 1 0.331057860659206 1 0.365136384963989 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9775905 chr3:9775910 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_37438 0 0 1 0 1 BRPF1 chr3:9775815 3'AG 9775815 Downstream 96bp
chr2 27598544 27598544 1 + A G STAD 27598533 + 27598513 27598553 41 CCAGCAACTCCGAGAAGGCTCCTTCCGGGTCACCCGCATGC CCAGCAACTCCGAGAAGGCTCCTTCCGGGTCGCCCGCATGC < 41bp 1 0.0620438447175396 1 0.0322735607624054 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SNX17 ENSG00000115234 CDS Human protein_coding chr2:27598533 chr2:27598544 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_37439 0 0 0 0 1 SNX17 chr2:27598576 5'GT 27598576 Upstream 33bp
chr15 40260054 40260054 1 + A G STAD 40260052 + 40260032 40260072 41 TGACCATCCCTAGTGACTTACCAGCTGACTTTCAAGATTTT TGACCATCCCTAGTGACTTACCGGCTGACTTTCAAGATTTT < 41bp 1 0.108780778525303 1 0.154015809297562 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40260052 chr15:40260054 synonymous SNV . 0 23 hm5C_associated_SNPs_37440 0 0 1 0 1 EIF2AK4 chr15:40260080 5'GT 40260080 Upstream 27bp
chr1 28862498 28862498 1 + C T STAD 28862499 + 28862479 28862519 41 TTGCCATCTCCCATGAGGGCCACGTGTACGGCTTCGGCCTC TTGCCATCTCCCATGAGGGTCACGTGTACGGCTTCGGCCTC < 41bp 1 0.662397910471603 1 0.0948189496994019 experiment 0.675204179056793 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28862499 chr1:28862498 synonymous SNV . 0 20 hm5C_associated_SNPs_37441 0 0 1 0 1 RCC1 chr1:28862538 5'GT 28862538 Upstream 41bp
chr15 22955229 22955229 1 + C T STAD 22955235 + 22955215 22955255 41 AAGGACCCCAAGAGCGGCTTCGACATAAAAGTACCACGCCG AAGGACCCCAAGAGTGGCTTCGACATAAAAGTACCACGCCG < 41bp 1 0.780266924020821 1 0.692640542984009 experiment 0.439466151958358 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22955235 chr15:22955229 synonymous SNV . 0 15 hm5C_associated_SNPs_37442 0 0 1 0 1 CYFIP1 chr15:22955280 5'GT 22955280 Upstream 52bp
chrX 99920261 99920261 1 + G A STAD 99920250 + 99920230 99920270 41 ATCTTGGCAGACATAGATCCCCCCAAGATCCGCTGTCCCCA ATCTTGGCAGACATAGATCCCCCCAAGATCCACTGTCCCCA < 41bp 1 0.645132612924134 1 0.124326169490814 experiment 0.709734774151731 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99920250 chrX:99920261 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_37443 0 0 0 0 1 SRPX2 chrX:99920240 3'AG 99920240 Downstream 22bp
chr1 36645665 36645665 1 + A G STAD 36645659 + 36645639 36645679 41 AAGCTGTGGTGCAGTCCCCGCAGGTCACAGGTAGATCTCCT AAGCTGTGGTGCAGTCCCCGCAGGTCGCAGGTAGATCTCCT < 41bp 1 0.366648332120727 1 0.883714079856873 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP7D1 ENSG00000116871 CDS Human protein_coding chr1:36645659 chr1:36645665 nonsynonymous SNV 0.998 3 27 hm5C_associated_SNPs_37444 0 0 0 0 1 MAP7D1 chr1:36645668 5'GT 36645668 Upstream 4bp
chr18 633332 633332 1 + A G STAD 633344 + 633324 633364 41 AAGATGTTACCTGGGCAGGACAGAGGACTGTGTGGGGAACT AAGATGTTGCCTGGGCAGGACAGAGGACTGTGTGGGGAACT < 41bp 1 0.543051930616005 1 0.426557183265686 experiment 0.913896138767989 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CLUL1 ENSG00000079101 CDS Human protein_coding chr18:633344 chr18:633332 synonymous SNV . 0 9 hm5C_associated_SNPs_37445 0 0 0 0 1 CLUL1 chr18:633298 3'AG 633298 Downstream 35bp
chr16 23700987 23700987 1 + A G STAD 23700976 + 23700956 23700996 41 CTGCACCTCAGCAACGGCAGCGTGCAGATCAACTTCTTCCA CTGCACCTCAGCAACGGCAGCGTGCAGATCAGCTTCTTCCA < 41bp 1 0.210788665885026 1 0.256470918655396 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700976 chr16:23700987 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_37447 0 0 1 0 1 PLK1 chr16:23700997 5'GT 23700997 Upstream 11bp
chr19 50031729 50031729 1 + G A STAD 50031728 + 50031708 50031748 41 CTTTGCCACTCCCCAGGGACCGATGATGTGGCGACCATCAG CTTTGCCACTCCCCAGGGACCAATGATGTGGCGACCATCAG < 41bp 1 0.525847348881599 1 0.240654081106186 experiment 0.948305302236802 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RCN3 ENSG00000142552 UTR5 Human protein_coding chr19:50031728 chr19:50031729 . . 0 22 hm5C_associated_SNPs_37451 0 0 1 0 1 RCN3 chr19:50031724 3'AG 50031724 Downstream 6bp
chr1 183881241 183881241 1 + A G STAD 183881247 + 183881227 183881267 41 GGTCTGACATGATCACCAGTCCCACTCCCACCAAAGAGCAG GGTCTGACATGATCGCCAGTCCCACTCCCACCAAAGAGCAG < 41bp 1 0.12368456033817 1 0.0444952249526978 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RGL1 ENSG00000143344 CDS Human protein_coding chr1:183881247 chr1:183881241 nonsynonymous SNV 0.102 0 15 hm5C_associated_SNPs_37452 0 0 0 0 1 RGL1 chr1:183881216 3'AG 183881216 Downstream 26bp
chr12 57571256 57571256 1 + G A STAD 57571257 + 57571237 57571277 41 CAGCCTGCCCCGCATTGAGGCAGCCTCCATGAGTGGGGCTG CAGCCTGCCCCGCATTGAGACAGCCTCCATGAGTGGGGCTG < 41bp 1 0.134275028720724 1 0.243463426828384 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57571257 chr12:57571256 nonsynonymous SNV 0.998 4 20 hm5C_associated_SNPs_37455 0 0 1 0 1 LRP1 chr12:57571210 3'AG 57571210 Downstream 47bp
chrX 129185910 129185910 1 + T C STAD 129185891 + 129185871 129185911 41 ATCCTCCTGGGAGCTCAGATCAAGAAGGAGACGATCCGATG ATCCTCCTGGGAGCTCAGATCAAGAAGGAGACGATCCGACG < 41bp 1 0.700397809000182 1 0.920889258384705 experiment 0.599204381999635 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129185891 chrX:129185910 nonsynonymous SNV 0.068 0 40 hm5C_associated_SNPs_37457 0 0 1 0 2 BCORL1 chrX:129185835 3'AG 129185835 Downstream 76bp
chrX 129185910 129185910 1 + T C STAD 129185891 + 129185871 129185911 41 ATCCTCCTGGGAGCTCAGATCAAGAAGGAGACGATCCGATG ATCCTCCTGGGAGCTCAGATCAAGAAGGAGACGATCCGACG < 41bp 1 0.700397809000182 1 0.920889258384705 experiment 0.599204381999635 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129185891 chrX:129185910 nonsynonymous SNV 0.068 0 40 hm5C_associated_SNPs_37457 0 0 1 0 2 BCORL1 chrX:129185991 5'GT 129185991 Upstream 82bp
chr5 150867571 150867571 1 + T C STAD 150867554 + 150867534 150867574 41 CTCCCTGCAGGCATCTTGGCCATCCTCATCCCCCGCCTGGA CTCCCTGCAGGCATCTTGGCCATCCTCATCCCCCGCCCGGA < 41bp 1 0.102350381559016 1 0.0207090377807617 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150867554 chr5:150867571 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_37458 0 0 0 0 1 SLC36A1 chr5:150867544 3'AG 150867544 Downstream 28bp
chr13 49771028 49771028 1 + G A STAD 49771026 + 49771006 49771046 41 TTTCTAGTTTGGACCATTTTCAGAAAAATGTGATATTACTA TTTCTAGTTTGGACCATTTTCAAAAAAATGTGATATTACTA < 41bp 1 0.546018574949778 1 0.82906711101532 experiment 0.907962850100443 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49771026 chr13:49771028 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_37460 0 0 0 2 2 FNDC3A chr13:49771013 3'AG 49771013 Downstream 16bp
chr13 49771028 49771028 1 + G A STAD 49771026 + 49771006 49771046 41 TTTCTAGTTTGGACCATTTTCAGAAAAATGTGATATTACTA TTTCTAGTTTGGACCATTTTCAAAAAAATGTGATATTACTA < 41bp 1 0.546018574949778 1 0.82906711101532 experiment 0.907962850100443 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49771026 chr13:49771028 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_37460 0 0 0 2 2 FNDC3A chr13:49771126 5'GT 49771126 Upstream 99bp
chr7 101837135 101837135 1 + A G STAD 101837147 + 101837127 101837167 41 TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA TGAAGTCCGTGGAGTTTGCACCGTCCGAGGGCGCTGGGACA < 41bp 1 0.025483728228426 1 0.333978861570358 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837147 chr7:101837135 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_37461 0 0 1 0 2 CUX1 chr7:101837122 3'AG 101837122 Downstream 14bp
chr7 101837135 101837135 1 + A G STAD 101837147 + 101837127 101837167 41 TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA TGAAGTCCGTGGAGTTTGCACCGTCCGAGGGCGCTGGGACA < 41bp 1 0.025483728228426 1 0.333978861570358 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837147 chr7:101837135 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_37461 0 0 1 0 2 CUX1 chr7:101837170 5'GT 101837170 Upstream 36bp
chr7 101837135 101837135 1 + A G STAD 101837148 + 101837128 101837168 41 GAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC GAAGTCCGTGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC < 41bp 1 0.09379773346942 1 0.445286929607391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837148 chr7:101837135 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_37462 0 0 1 0 2 CUX1 chr7:101837122 3'AG 101837122 Downstream 14bp
chr7 101837135 101837135 1 + A G STAD 101837148 + 101837128 101837168 41 GAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC GAAGTCCGTGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC < 41bp 1 0.09379773346942 1 0.445286929607391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837148 chr7:101837135 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_37462 0 0 1 0 2 CUX1 chr7:101837170 5'GT 101837170 Upstream 36bp
chr11 14865502 14865502 1 + C T STAD 14865490 + 14865470 14865510 41 TCCTGCATTAGAATTGATGGCTCTATACGTGGCAGCTGCCA TCCTGCATTAGAATTGATGGCTCTATACGTGGTAGCTGCCA < 41bp 1 0.440788151253017 1 0.875625967979431 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE3B ENSG00000152270 CDS Human protein_coding chr11:14865490 chr11:14865502 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_37463 0 0 1 0 1 PDE3B chr11:14865572 5'GT 14865572 Upstream 71bp
chr8 32613931 32613931 1 + A G STAD 32613925 + 32613905 32613945 41 CCTTTCTTATGTCCAGGAAACAGCGGAAAAAGCTGCATGAC CCTTTCTTATGTCCAGGAAACAGCGGGAAAAGCTGCATGAC < 41bp 1 0.566527788106023 1 0.826608419418335 experiment 0.866944423787954 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NRG1 ENSG00000157168 CDS Human protein_coding chr8:32613925 chr8:32613931 nonsynonymous SNV 0.980 2 27 hm5C_associated_SNPs_37465 0 0 0 0 1 NRG1 chr8:32613921 3'AG 32613921 Downstream 11bp
chr1 117618443 117618443 1 + C T STAD 117618425 + 117618405 117618445 41 GTGTTTCCAAGAAGGTAGAACCCTCAGACCCAGTAGCCCGG GTGTTTCCAAGAAGGTAGAACCCTCAGACCCAGTAGCCTGG < 41bp 1 0.0793304050482115 1 0.0400985777378082 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117618425 chr1:117618443 nonsynonymous SNV 0.314 1 39 hm5C_associated_SNPs_37466 0 0 1 0 1 TTF2 chr1:117618481 5'GT 117618481 Upstream 39bp
chr12 132400493 132400493 1 + G T STAD 132400500 + 132400480 132400520 41 TGCCGCCTGCACAGCGCCCCCAACCTGTCTGACTTGCACGT TGCCGCCTGCACATCGCCCCCAACCTGTCTGACTTGCACGT < 41bp 1 0.182282523969113 1 0.0981128215789795 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ULK1 ENSG00000177169 CDS Human protein_coding chr12:132400500 chr12:132400493 nonsynonymous SNV 0.987 2 14 hm5C_associated_SNPs_37467 0 0 1 0 1 ULK1 chr12:132400436 3'AG 132400436 Downstream 58bp
chr8 21859729 21859729 1 + G T STAD 21859721 + 21859701 21859741 41 CCAAGAAGAGGACCACACCCCTGAACCAGGAGAGCGACCGC CCAAGAAGAGGACCACACCCCTGAACCATGAGAGCGACCGC < 41bp 1 0.701607910337119 1 0.786028265953064 experiment 0.596784179325762 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21859721 chr8:21859729 nonsynonymous SNV 0.995 1 29 hm5C_associated_SNPs_37468 0 0 1 0 1 XPO7 chr8:21859783 5'GT 21859783 Upstream 55bp
chr8 21859729 21859729 1 + G T STAD 21859735 + 21859715 21859755 41 ACACCCCTGAACCAGGAGAGCGACCGCTTTCTGCACATCAT ACACCCCTGAACCATGAGAGCGACCGCTTTCTGCACATCAT < 41bp 1 0.317826814556017 1 0.0937542915344238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21859735 chr8:21859729 nonsynonymous SNV 0.995 1 15 hm5C_associated_SNPs_37469 0 0 1 0 1 XPO7 chr8:21859783 5'GT 21859783 Upstream 55bp
chr10 17277877 17277877 1 + T C STAD 17277858 + 17277838 17277878 41 TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCCG < 41bp 1 0.0626253181497983 1 0.484212040901184 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277858 chr10:17277877 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_37472 0 0 1 0 2 VIM chr10:17277845 3'AG 17277845 Downstream 33bp
chr10 17277877 17277877 1 + T C STAD 17277858 + 17277838 17277878 41 TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCCG < 41bp 1 0.0626253181497983 1 0.484212040901184 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277858 chr10:17277877 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_37472 0 0 1 0 2 VIM chr10:17277888 5'GT 17277888 Upstream 12bp
chr19 45973963 45973963 1 + A G STAD 45973959 + 45973939 45973979 41 CGATCACAACCAGCCAGGACCTCCAGTGGCTTGTGCAACCC CGATCACAACCAGCCAGGACCTCCGGTGGCTTGTGCAACCC < 41bp 1 0.775377625518265 1 0.4474778175354 experiment 0.44924474896347 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOSB ENSG00000125740 CDS Human protein_coding chr19:45973959 chr19:45973963 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_37473 0 0 0 0 1 FOSB chr19:45973887 3'AG 45973887 Downstream 77bp
chr20 5932800 5932800 1 + C A STAD 5932807 + 5932787 5932827 41 AACCACAGGAAAACGTACTTCTGGTAGGTGAGGTCAATGAT AACCACAGGAAAAAGTACTTCTGGTAGGTGAGGTCAATGAT < 41bp 1 0.420200636680352 1 0.308088779449463 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM8 ENSG00000125885 CDS Human protein_coding chr20:5932807 chr20:5932800 nonsynonymous SNV 0.774 0 14 hm5C_associated_SNPs_37474 0 0 1 0 1 MCM8 chr20:5932809 5'GT 5932809 Upstream 10bp
chr2 192141703 192141703 1 + G A STAD 192141711 + 192141691 192141731 41 GAACCTCTCAATGAGGAGACCTTCATCAACAACCTCAAGAA GAACCTCTCAATAAGGAGACCTTCATCAACAACCTCAAGAA < 41bp 1 0.32015539375133 1 0.0656527876853943 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYO1B ENSG00000128641 CDS Human protein_coding chr2:192141711 chr2:192141703 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_37475 0 0 1 0 2 MYO1B chr2:192141613 3'AG 192141613 Downstream 91bp
chr2 192141703 192141703 1 + G A STAD 192141711 + 192141691 192141731 41 GAACCTCTCAATGAGGAGACCTTCATCAACAACCTCAAGAA GAACCTCTCAATAAGGAGACCTTCATCAACAACCTCAAGAA < 41bp 1 0.32015539375133 1 0.0656527876853943 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYO1B ENSG00000128641 CDS Human protein_coding chr2:192141711 chr2:192141703 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_37475 0 0 1 0 2 MYO1B chr2:192141756 5'GT 192141756 Upstream 54bp
chr10 17277193 17277193 1 + G A STAD 17277176 + 17277156 17277196 41 CACCCCCTGCAGAATGAGTCCCTGGAACGCCAGATGCGTGA CACCCCCTGCAGAATGAGTCCCTGGAACGCCAGATGCATGA < 41bp 1 0.132458440697188 1 0.0817661881446838 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277176 chr10:17277193 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_37476 0 0 1 0 1 VIM chr10:17277168 3'AG 17277168 Downstream 26bp
chr10 17277193 17277193 1 + G A STAD 17277185 + 17277165 17277205 41 CAGAATGAGTCCCTGGAACGCCAGATGCGTGAAATGGAAGA CAGAATGAGTCCCTGGAACGCCAGATGCATGAAATGGAAGA < 41bp 1 0.405657723623962 1 0.468558132648468 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277185 chr10:17277193 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_37477 0 0 1 0 1 VIM chr10:17277168 3'AG 17277168 Downstream 26bp
chr10 17277193 17277193 1 + G A STAD 17277192 + 17277172 17277212 41 AGTCCCTGGAACGCCAGATGCGTGAAATGGAAGAGAACTTT AGTCCCTGGAACGCCAGATGCATGAAATGGAAGAGAACTTT < 41bp 1 0.566250809601883 1 0.192253440618515 experiment 0.867498380796233 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277192 chr10:17277193 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_37478 0 0 1 0 1 VIM chr10:17277168 3'AG 17277168 Downstream 26bp
chr1 214795534 214795534 1 + A T STAD 214795516 + 214795496 214795536 41 AAGTTTCAAGAACTCCAACTCCAACTGGAGAAAGCAAAAGT AAGTTTCAAGAACTCCAACTCCAACTGGAGAAAGCAAATGT < 41bp 1 0.0327326273805474 1 0.166097223758698 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214795516 chr1:214795534 nonsynonymous SNV 0.991 2 39 hm5C_associated_SNPs_37479 0 0 1 0 1 CENPF chr1:214795624 5'GT 214795624 Upstream 91bp
chr1 214795534 214795534 1 + A T STAD 214795520 + 214795500 214795540 41 TTCAAGAACTCCAACTCCAACTGGAGAAAGCAAAAGTGGAA TTCAAGAACTCCAACTCCAACTGGAGAAAGCAAATGTGGAA < 41bp 1 0.670621869227452 1 0.724382281303406 experiment 0.658756261545097 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214795520 chr1:214795534 nonsynonymous SNV 0.991 2 35 hm5C_associated_SNPs_37480 0 0 1 0 1 CENPF chr1:214795624 5'GT 214795624 Upstream 91bp
chr19 10657566 10657566 1 + C T STAD 10657575 + 10657555 10657595 41 GCTGTCAGGGTCAGCCTCTCCCAGCCGGTACCATGGGCCTG GCTGTCAGGGTTAGCCTCTCCCAGCCGGTACCATGGGCCTG < 41bp 1 0.389977788845178 1 0.29426383972168 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATG4D ENSG00000130734 CDS Human protein_coding chr19:10657575 chr19:10657566 nonsynonymous SNV 0.006 0 12 hm5C_associated_SNPs_37484 0 0 0 0 1 ATG4D chr19:10657515 3'AG 10657515 Downstream 52bp
chr3 148559690 148559690 1 + C T STAD 148559686 + 148559666 148559706 41 CAGAGAGTGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAA CAGAGAGTGGATTTCTCCTGCATTTTGCCAGTGGTTTGTAA < 41bp 1 0.0851624988982927 1 0.0262549519538879 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559686 chr3:148559690 synonymous SNV . 0 25 hm5C_associated_SNPs_37487 0 0 0 0 2 CPB1 chr3:148559610 3'AG 148559610 Downstream 81bp
chr3 148559690 148559690 1 + C T STAD 148559686 + 148559666 148559706 41 CAGAGAGTGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAA CAGAGAGTGGATTTCTCCTGCATTTTGCCAGTGGTTTGTAA < 41bp 1 0.0851624988982927 1 0.0262549519538879 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559686 chr3:148559690 synonymous SNV . 0 25 hm5C_associated_SNPs_37487 0 0 0 0 2 CPB1 chr3:148559711 5'GT 148559711 Upstream 22bp
chr3 148559690 148559690 1 + C T STAD 148559693 + 148559673 148559713 41 TGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGAGGT TGGATTTCTCCTGCATTTTGCCAGTGGTTTGTAAGAGAGGT < 41bp 1 0.202520507308909 1 0.644473552703857 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559693 chr3:148559690 synonymous SNV . 0 18 hm5C_associated_SNPs_37488 0 0 0 0 2 CPB1 chr3:148559610 3'AG 148559610 Downstream 81bp
chr3 148559690 148559690 1 + C T STAD 148559693 + 148559673 148559713 41 TGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGAGGT TGGATTTCTCCTGCATTTTGCCAGTGGTTTGTAAGAGAGGT < 41bp 1 0.202520507308909 1 0.644473552703857 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559693 chr3:148559690 synonymous SNV . 0 18 hm5C_associated_SNPs_37488 0 0 0 0 2 CPB1 chr3:148559711 5'GT 148559711 Upstream 22bp
chr3 148559690 148559690 1 + C T STAD 148559694 + 148559674 148559714 41 GGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGAGGTC GGATTTCTCCTGCATTTTGCCAGTGGTTTGTAAGAGAGGTC < 41bp 1 0.489939883718966 1 0.436573386192322 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559694 chr3:148559690 synonymous SNV . 0 17 hm5C_associated_SNPs_37489 0 0 0 0 2 CPB1 chr3:148559610 3'AG 148559610 Downstream 81bp
chr3 148559690 148559690 1 + C T STAD 148559694 + 148559674 148559714 41 GGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGAGGTC GGATTTCTCCTGCATTTTGCCAGTGGTTTGTAAGAGAGGTC < 41bp 1 0.489939883718966 1 0.436573386192322 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559694 chr3:148559690 synonymous SNV . 0 17 hm5C_associated_SNPs_37489 0 0 0 0 2 CPB1 chr3:148559711 5'GT 148559711 Upstream 22bp
chr1 228468301 228468301 1 + G A STAD 228468289 + 228468269 228468309 41 TCCGCAGAGGAGCGCGGCACCCTGGCCCTGCAGTGTGAAGT TCCGCAGAGGAGCGCGGCACCCTGGCCCTGCAATGTGAAGT < 41bp 1 0.0521219338812494 1 0.117136269807816 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228468289 chr1:228468301 synonymous SNV . 0 33 hm5C_associated_SNPs_37490 0 0 0 0 1 OBSCN chr1:228468231 3'AG 228468231 Downstream 71bp
chr17 53014068 53014068 1 + A G STAD 53014053 + 53014033 53014073 41 TTTTGGAGCAAAATAAGAACCAGAAGGAAGCCACCAATGTA TTTTGGAGCAAAATAAGAACCAGAAGGAAGCCACCGATGTA < 41bp 1 0.696488559491958 1 0.65488076210022 experiment 0.607022881016084 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014053 chr17:53014068 nonsynonymous SNV 0.611 0 36 hm5C_associated_SNPs_37491 0 0 0 0 2 TOM1L1 chr17:53014010 3'AG 53014010 Downstream 59bp
chr17 53014068 53014068 1 + A G STAD 53014053 + 53014033 53014073 41 TTTTGGAGCAAAATAAGAACCAGAAGGAAGCCACCAATGTA TTTTGGAGCAAAATAAGAACCAGAAGGAAGCCACCGATGTA < 41bp 1 0.696488559491958 1 0.65488076210022 experiment 0.607022881016084 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014053 chr17:53014068 nonsynonymous SNV 0.611 0 36 hm5C_associated_SNPs_37491 0 0 0 0 2 TOM1L1 chr17:53014070 5'GT 53014070 Upstream 3bp
chr11 71502818 71502818 1 + C T STAD 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCACCCGTCGTCAGTCAAGTAT < 41bp 1 0.248558489086357 1 0.309241116046906 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502818 nonsynonymous SNV 0.834 2 27 hm5C_associated_SNPs_37492 0 0 0 0 3 FAM86C1 chr11:71502782 3'AG 71502782 Downstream 37bp
chr11 71502818 71502818 1 + C T STAD 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCACCCGTCGTCAGTCAAGTAT < 41bp 1 0.248558489086357 1 0.309241116046906 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502818 nonsynonymous SNV 0.834 2 27 hm5C_associated_SNPs_37492 0 0 0 0 3 FAM86C1 chr11:71502785 3'AG 71502785 Downstream 34bp
chr11 71502818 71502818 1 + C T STAD 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCACCCGTCGTCAGTCAAGTAT < 41bp 1 0.248558489086357 1 0.309241116046906 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502818 nonsynonymous SNV 0.834 2 27 hm5C_associated_SNPs_37492 0 0 0 0 3 FAM86C1 chr11:71502865 5'GT 71502865 Upstream 48bp
chr13 103286381 103286381 1 + G A STAD 103286380 + 103286360 103286400 41 TAACTGGACACTGAGAGGGACGCAGCTGATGAATGGAACAT TAACTGGACACTGAGAGGGACACAGCTGATGAATGGAACAT < 41bp 1 0.414570903364182 1 0.107736349105835 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TPP2 ENSG00000134900 CDS Human protein_coding chr13:103286380 chr13:103286381 synonymous SNV . 0 22 hm5C_associated_SNPs_37493 0 0 1 0 2 TPP2 chr13:103286300 3'AG 103286300 Downstream 82bp
chr13 103286381 103286381 1 + G A STAD 103286380 + 103286360 103286400 41 TAACTGGACACTGAGAGGGACGCAGCTGATGAATGGAACAT TAACTGGACACTGAGAGGGACACAGCTGATGAATGGAACAT < 41bp 1 0.414570903364182 1 0.107736349105835 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TPP2 ENSG00000134900 CDS Human protein_coding chr13:103286380 chr13:103286381 synonymous SNV . 0 22 hm5C_associated_SNPs_37493 0 0 1 0 2 TPP2 chr13:103286448 5'GT 103286448 Upstream 68bp
chr1 29651765 29651765 1 + G A STAD 29651781 + 29651761 29651801 41 CGCTGCCACAACTTGGTGGACGTTTTCTTTGCTGCCAAAAC CGCTACCACAACTTGGTGGACGTTTTCTTTGCTGCCAAAAC < 41bp 1 0.040232372690272 1 0.0484530627727509 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPRU ENSG00000060656 CDS Human protein_coding chr1:29651781 chr1:29651765 nonsynonymous SNV 0.999 1 5 hm5C_associated_SNPs_37496 0 0 1 0 2 PTPRU chr1:29651703 3'AG 29651703 Downstream 63bp
chr1 29651765 29651765 1 + G A STAD 29651781 + 29651761 29651801 41 CGCTGCCACAACTTGGTGGACGTTTTCTTTGCTGCCAAAAC CGCTACCACAACTTGGTGGACGTTTTCTTTGCTGCCAAAAC < 41bp 1 0.040232372690272 1 0.0484530627727509 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPRU ENSG00000060656 CDS Human protein_coding chr1:29651781 chr1:29651765 nonsynonymous SNV 0.999 1 5 hm5C_associated_SNPs_37496 0 0 1 0 2 PTPRU chr1:29651838 5'GT 29651838 Upstream 74bp
chr17 45376747 45376747 1 + G A STAD 45376744 + 45376724 45376764 41 GGCTACTACTGCAACTGTACCACGCGTACTGACACCTGCAT GGCTACTACTGCAACTGTACCACACGTACTGACACCTGCAT < 41bp 1 0.325500667749027 1 0.0429875254631042 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45376744 chr17:45376747 synonymous SNV . 0 24 hm5C_associated_SNPs_37498 0 0 0 0 1 ITGB3 chr17:45376674 3'AG 45376674 Downstream 74bp
chr12 109629520 109629520 1 + C T STAD 109629531 + 109629511 109629551 41 CCAGAACAACGACATCGACACCGGGTGGTTGGACTACCTCA CCAGAACAATGACATCGACACCGGGTGGTTGGACTACCTCA < 41bp 1 0.305366494709967 1 0.471925258636475 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109629531 chr12:109629520 synonymous SNV . 0 10 hm5C_associated_SNPs_37499 0 0 1 0 1 ACACB chr12:109629568 5'GT 109629568 Upstream 49bp
chr20 43243321 43243321 1 + A C STAD 43243326 + 43243306 43243346 41 AAGCTGGCTGGAGACATGGGCGAGCTGGCACTCGAGGGGGC AAGCTGGCTGGAGACCTGGGCGAGCTGGCACTCGAGGGGGC < 41bp 1 0.664054626265393 1 0.332049250602722 experiment 0.671890747469214 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKIG ENSG00000168734 CDS Human protein_coding chr20:43243326 chr20:43243321 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_37500 0 0 1 0 1 PKIG chr20:43243348 5'GT 43243348 Upstream 28bp
chr12 117426554 117426554 1 + C A STAD 117426534 + 117426514 117426554 41 CAGTAGCCGCTGCTGGAGATCTGATGTACCTGCTCAAAGCC CAGTAGCCGCTGCTGGAGATCTGATGTACCTGCTCAAAGCA < 41bp 1 0.475475774814082 1 0.37824159860611 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117426534 chr12:117426554 synonymous SNV . 0 41 hm5C_associated_SNPs_37501 0 0 0 0 1 FBXW8 chr12:117426468 3'AG 117426468 Downstream 87bp
chr15 91432748 91432748 1 + T C STAD 91432750 + 91432730 91432770 41 GGCGCTGTCCCCCACAGGTCCGCACCTGACGTCCCACCCTG GGCGCTGTCCCCCACAGGCCCGCACCTGACGTCCCACCCTG < 41bp 1 0.39037768968293 1 0.113013714551926 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FES ENSG00000182511 CDS Human protein_coding chr15:91432750 chr15:91432748 nonsynonymous SNV 0.220 4 19 hm5C_associated_SNPs_37502 0 0 1 0 1 FES chr15:91432747 3'AG 91432747 Downstream 2bp
chr3 184042682 184042682 1 + G A STAD 184042675 + 184042655 184042695 41 GTGAATGGCAGGCAGAGGAACGAGGACGCCTGAAGGAAGAG GTGAATGGCAGGCAGAGGAACGAGGACACCTGAAGGAAGAG < 41bp 1 0.570547115118129 1 0.598645091056824 experiment 0.858905769763743 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042675 chr3:184042682 nonsynonymous SNV 0.973 3 28 hm5C_associated_SNPs_37503 0 0 1 0 1 EIF4G1 chr3:184042666 3'AG 184042666 Downstream 17bp
chr3 184042682 184042682 1 + G A STAD 184042681 + 184042661 184042701 41 GGCAGGCAGAGGAACGAGGACGCCTGAAGGAAGAGCTGGAA GGCAGGCAGAGGAACGAGGACACCTGAAGGAAGAGCTGGAA < 41bp 1 0.43885692561355 1 0.403298795223236 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042681 chr3:184042682 nonsynonymous SNV 0.973 3 22 hm5C_associated_SNPs_37504 0 0 1 0 1 EIF4G1 chr3:184042666 3'AG 184042666 Downstream 17bp
chr7 142458464 142458464 1 + T G STAD 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAAGTC < 41bp 1 0.328503262600467 1 0.53781396150589 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458464 nonsynonymous SNV 0.734 4 39 hm5C_associated_SNPs_37505 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 59bp
chr7 142458464 142458464 1 + T G STAD 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAAGTCTGT < 41bp 1 0.195340733736439 1 0.273138880729675 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458464 nonsynonymous SNV 0.734 4 36 hm5C_associated_SNPs_37506 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 59bp
chr7 142458464 142458464 1 + T G STAD 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGCTACAACTGTGAGGAGAAGTCTGTCCC < 41bp 1 0.40632835710138 1 0.495922446250916 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458464 nonsynonymous SNV 0.734 4 33 hm5C_associated_SNPs_37507 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 59bp
chr7 142458464 142458464 1 + T G STAD 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAAGTCTGTCCCCTACCAGGTGTCCC < 41bp 1 0.13444668597729 1 0.0815814733505249 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458464 nonsynonymous SNV 0.734 4 19 hm5C_associated_SNPs_37508 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 59bp
chr7 142458464 142458464 1 + T G STAD 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAAGTCTGTCCCCTACCAGGTGTCCCTGAA < 41bp 1 0.138300969696902 1 0.198496997356415 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458464 nonsynonymous SNV 0.734 4 15 hm5C_associated_SNPs_37509 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 59bp
chr7 142458464 142458464 1 + T G STAD 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAAGTCTGTCCCCTACCAGGTGTCCCTGAAT < 41bp 1 0.133054415550831 1 0.211406677961349 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458464 nonsynonymous SNV 0.734 4 14 hm5C_associated_SNPs_37510 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 59bp
chr7 142458464 142458464 1 + T G STAD 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAAGTCTGTCCCCTACCAGGTGTCCCTGAATT < 41bp 1 0.0197875892880606 1 0.1597800552845 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458464 nonsynonymous SNV 0.734 4 13 hm5C_associated_SNPs_37511 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 59bp
chr7 142458464 142458464 1 + T G STAD 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAAGTCTGTCCCCTACCAGGTGTCCCTGAATTC < 41bp 1 0.202142592913962 1 0.075776070356369 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458464 nonsynonymous SNV 0.734 4 12 hm5C_associated_SNPs_37512 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 59bp
chr7 142458464 142458464 1 + T G STAD 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAAGTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG < 41bp 1 0.256643829438871 1 0.259568691253662 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458464 nonsynonymous SNV 0.734 4 9 hm5C_associated_SNPs_37513 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 59bp
chr7 142458464 142458464 1 + T G STAD 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAAGTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC < 41bp 1 0.656359075347118 1 0.846531391143799 experiment 0.687281849305764 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458464 nonsynonymous SNV 0.734 4 8 hm5C_associated_SNPs_37514 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 59bp
chr7 142458464 142458464 1 + T G STAD 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT GTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT < 41bp 1 0.117595011057631 1 0.0558074712753296 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458464 nonsynonymous SNV 0.734 4 1 hm5C_associated_SNPs_37515 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 59bp
chr19 41077980 41077980 1 + G T STAD 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GTACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG < 41bp 1 0.401147826421513 1 0.896226286888123 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41077980 nonsynonymous SNV 0.990 3 2 hm5C_associated_SNPs_37517 0 0 1 0 1 SPTBN4 chr19:41077925 3'AG 41077925 Downstream 56bp
chr20 18142527 18142527 1 + G A STAD 18142508 + 18142488 18142528 41 CCATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCGG CCATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCAG < 41bp 1 0.11151116490325 1 0.0425105690956116 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KAT14 ENSG00000149474 CDS Human protein_coding chr20:18142508 chr20:18142527 nonsynonymous SNV 0.996 3 40 hm5C_associated_SNPs_37518 0 0 1 0 2 KAT14 chr20:18142464 3'AG 18142464 Downstream 64bp
chr20 18142527 18142527 1 + G A STAD 18142508 + 18142488 18142528 41 CCATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCGG CCATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCAG < 41bp 1 0.11151116490325 1 0.0425105690956116 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KAT14 ENSG00000149474 CDS Human protein_coding chr20:18142508 chr20:18142527 nonsynonymous SNV 0.996 3 40 hm5C_associated_SNPs_37518 0 0 1 0 2 KAT14 chr20:18142467 3'AG 18142467 Downstream 61bp
chr19 49652922 49652922 1 + C T STAD 49652931 + 49652911 49652951 41 TCGTTCGGCTGCAGCGGGAGCCCTGGGCTCTCCGGGGCTCC TCGTTCGGCTGTAGCGGGAGCCCTGGGCTCTCCGGGGCTCC < 41bp 1 0.117766277324477 1 0.0886055827140808 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652931 chr19:49652922 nonsynonymous SNV 0.987 0 12 hm5C_associated_SNPs_37519 0 0 1 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 54bp
chr19 49652922 49652922 1 + C T STAD 49652932 + 49652912 49652952 41 CGTTCGGCTGCAGCGGGAGCCCTGGGCTCTCCGGGGCTCCC CGTTCGGCTGTAGCGGGAGCCCTGGGCTCTCCGGGGCTCCC < 41bp 1 0.217112767019216 1 0.39899343252182 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652932 chr19:49652922 nonsynonymous SNV 0.987 0 11 hm5C_associated_SNPs_37520 0 0 1 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 54bp
chr19 3525967 3525967 1 + G C STAD 3525949 + 3525929 3525969 41 GGAGACCGCTTCATCCCCTCCAGAGCCGGAGCCAACTGGAG GGAGACCGCTTCATCCCCTCCAGAGCCGGAGCCAACTGCAG < 41bp 1 0.447094462270034 1 0.749253749847412 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3525949 chr19:3525967 nonsynonymous SNV 0.997 4 39 hm5C_associated_SNPs_37521 0 0 1 0 1 FZR1 chr19:3525991 5'GT 3525991 Upstream 25bp
chr16 70575719 70575719 1 + T C STAD 70575721 + 70575701 70575741 41 TGAGTTGGACAGCCTCTCTCCCATTCTGTTTTGCCAGGTTG TGAGTTGGACAGCCTCTCCCCCATTCTGTTTTGCCAGGTTG < 41bp 1 0.0355885813633419 1 0.0568810999393463 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70575721 chr16:70575719 synonymous SNV . 0 19 hm5C_associated_SNPs_37523 0 0 1 0 1 SF3B3 chr16:70575737 5'GT 70575737 Upstream 19bp
chr1 230379172 230379172 1 + A C STAD 230379152 + 230379132 230379172 41 AATGAGCACTGGCTGGAGCCCCTCCTGGAAAGGGTGGCGGA AATGAGCACTGGCTGGAGCCCCTCCTGGAAAGGGTGGCGGC < 41bp 1 0.0845525379309019 1 0.115952759981155 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230379152 chr1:230379172 nonsynonymous SNV 0.853 4 41 hm5C_associated_SNPs_37524 0 0 1 0 1 GALNT2 chr1:230379173 5'GT 230379173 Upstream 2bp
chr20 5958554 5958554 1 + T A STAD 5958574 + 5958554 5958594 41 TGTTTGTGGTAACACCACGACCACCTCTGGTCTGACGGTAA AGTTTGTGGTAACACCACGACCACCTCTGGTCTGACGGTAA < 41bp 1 0.0978552596466617 1 0.190364748239517 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCM8 ENSG00000125885 CDS Human protein_coding chr20:5958574 chr20:5958554 stopgain 1.000 1 1 hm5C_associated_SNPs_37525 0 0 1 0 1 MCM8 chr20:5958522 3'AG 5958522 Downstream 33bp
chr11 108205742 108205742 1 + T G STAD 108205739 + 108205719 108205759 41 AAATCTGGTGACTATACAGTCATTTAAAGCAGAATTTCGCT AAATCTGGTGACTATACAGTCATGTAAAGCAGAATTTCGCT < 41bp 1 0.0817669279944827 1 0.0784746408462524 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108205739 chr11:108205742 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_37527 0 0 1 0 2 ATM chr11:108205696 3'AG 108205696 Downstream 47bp
chr11 108205742 108205742 1 + T G STAD 108205739 + 108205719 108205759 41 AAATCTGGTGACTATACAGTCATTTAAAGCAGAATTTCGCT AAATCTGGTGACTATACAGTCATGTAAAGCAGAATTTCGCT < 41bp 1 0.0817669279944827 1 0.0784746408462524 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108205739 chr11:108205742 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_37527 0 0 1 0 2 ATM chr11:108205836 5'GT 108205836 Upstream 95bp
chr17 60766976 60766976 1 + C T STAD 60766960 + 60766940 60766980 41 CCTACCTCAACGGCACCTTCCGGCTGCTTCAGAAGCCGCTG CCTACCTCAACGGCACCTTCCGGCTGCTTCAGAAGCTGCTG < 41bp 1 0.386820629498755 1 0.760228931903839 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60766960 chr17:60766976 nonsynonymous SNV 0.892 3 37 hm5C_associated_SNPs_37535 0 0 0 0 1 MRC2 chr17:60766883 3'AG 60766883 Downstream 94bp
chr11 12281433 12281433 1 + G A STAD 12281442 + 12281422 12281462 41 CACCCTGGAAGGCAGCCCCCCAGGTATCTCCACCTCCTTCT CACCCTGGAAGACAGCCCCCCAGGTATCTCCACCTCCTTCT < 41bp 1 0.564615743546974 1 0.134138166904449 experiment 0.870768512906052 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12281442 chr11:12281433 nonsynonymous SNV 0.973 0 12 hm5C_associated_SNPs_37541 0 0 1 1 2 MICAL2 chr11:12281342 3'AG 12281342 Downstream 92bp
chr11 12281433 12281433 1 + G A STAD 12281442 + 12281422 12281462 41 CACCCTGGAAGGCAGCCCCCCAGGTATCTCCACCTCCTTCT CACCCTGGAAGACAGCCCCCCAGGTATCTCCACCTCCTTCT < 41bp 1 0.564615743546974 1 0.134138166904449 experiment 0.870768512906052 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12281442 chr11:12281433 nonsynonymous SNV 0.973 0 12 hm5C_associated_SNPs_37541 0 0 1 1 2 MICAL2 chr11:12281444 5'GT 12281444 Upstream 12bp
chr5 33459936 33459936 1 + C T STAD 33459929 + 33459909 33459949 41 CCTTTGAGGTGGAGAAGGAGCTGTTTGCCCTGAAACCCATG CCTTTGAGGTGGAGAAGGAGCTGTTTGTCCTGAAACCCATG < 41bp 1 0.472487495206803 1 0.0691403448581696 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33459929 chr5:33459936 nonsynonymous SNV 0.972 4 28 hm5C_associated_SNPs_37542 0 0 1 0 1 TARS chr5:33459966 5'GT 33459966 Upstream 31bp
chr18 8635547 8635547 1 + C T STAD 8635557 + 8635537 8635577 41 TCAGAAGATGCAGAGCTTCTCTTAGTTGGAAATAAGTTGGA TCAGAAGATGTAGAGCTTCTCTTAGTTGGAAATAAGTTGGA < 41bp 1 0.504031114754782 1 0.472482770681381 experiment 0.991937770490436 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RAB12 ENSG00000206418 CDS Human protein_coding chr18:8635557 chr18:8635547 nonsynonymous SNV 0.993 0 11 hm5C_associated_SNPs_37543 0 0 1 0 2 RAB12 chr18:8635531 3'AG 8635531 Downstream 17bp
chr18 8635547 8635547 1 + C T STAD 8635557 + 8635537 8635577 41 TCAGAAGATGCAGAGCTTCTCTTAGTTGGAAATAAGTTGGA TCAGAAGATGTAGAGCTTCTCTTAGTTGGAAATAAGTTGGA < 41bp 1 0.504031114754782 1 0.472482770681381 experiment 0.991937770490436 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RAB12 ENSG00000206418 CDS Human protein_coding chr18:8635557 chr18:8635547 nonsynonymous SNV 0.993 0 11 hm5C_associated_SNPs_37543 0 0 1 0 2 RAB12 chr18:8635620 5'GT 8635620 Upstream 74bp
chr22 44547380 44547380 1 + G A STAD 44547390 + 44547370 44547410 41 TCACTTTTGTGAACAAGCACCTGAACAAGCTGAATTTGGAG TCACTTTTGTAAACAAGCACCTGAACAAGCTGAATTTGGAG < 41bp 1 0.223541908298657 1 0.488171607255936 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PARVB ENSG00000188677 CDS Human protein_coding chr22:44547390 chr22:44547380 synonymous SNV . 0 11 hm5C_associated_SNPs_37544 0 0 0 0 2 PARVB chr22:44547363 3'AG 44547363 Downstream 18bp
chr22 44547380 44547380 1 + G A STAD 44547390 + 44547370 44547410 41 TCACTTTTGTGAACAAGCACCTGAACAAGCTGAATTTGGAG TCACTTTTGTAAACAAGCACCTGAACAAGCTGAATTTGGAG < 41bp 1 0.223541908298657 1 0.488171607255936 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PARVB ENSG00000188677 CDS Human protein_coding chr22:44547390 chr22:44547380 synonymous SNV . 0 11 hm5C_associated_SNPs_37544 0 0 0 0 2 PARVB chr22:44547431 5'GT 44547431 Upstream 52bp
chr19 19638863 19638863 1 + C T STAD 19638852 + 19638832 19638872 41 TCCACACAACCCGCTGGGTGCCCCCCTTGATCGGGGAGCTG TCCACACAACCCGCTGGGTGCCCCCCTTGATTGGGGAGCTG < 41bp 1 0.154271000625435 1 0.0422485172748566 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19638852 chr19:19638863 synonymous SNV . 0 32 hm5C_associated_SNPs_37545 0 0 1 0 2 NDUFA13 chr19:19638816 3'AG 19638816 Downstream 48bp
chr19 19638863 19638863 1 + C T STAD 19638852 + 19638832 19638872 41 TCCACACAACCCGCTGGGTGCCCCCCTTGATCGGGGAGCTG TCCACACAACCCGCTGGGTGCCCCCCTTGATTGGGGAGCTG < 41bp 1 0.154271000625435 1 0.0422485172748566 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19638852 chr19:19638863 synonymous SNV . 0 32 hm5C_associated_SNPs_37545 0 0 1 0 2 NDUFA13 chr19:19638925 5'GT 19638925 Upstream 63bp
chr1 183086469 183086469 1 + C T STAD 183086473 + 183086453 183086493 41 AGATGAGGATGGGTGGCGTGCGGAACAGAGAGATGGCTCTG AGATGAGGATGGGTGGTGTGCGGAACAGAGAGATGGCTCTG < 41bp 1 0.794048501363788 1 0.685839116573334 experiment 0.411902997272424 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183086473 chr1:183086469 nonsynonymous SNV 0.987 1 17 hm5C_associated_SNPs_37546 0 0 1 0 1 LAMC1 chr1:183086455 3'AG 183086455 Downstream 15bp
chr16 56362621 56362621 1 + A G STAD 56362604 + 56362584 56362624 41 AGACACCGAGCCCTTCTCTGCAGAGCTGCTTTCTGCCATGA AGACACCGAGCCCTTCTCTGCAGAGCTGCTTTCTGCCGTGA < 41bp 1 0.489461485599856 1 0.603116035461426 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control GNAO1 ENSG00000087258 CDS Human protein_coding chr16:56362604 chr16:56362621 nonsynonymous SNV 0.997 3 38 hm5C_associated_SNPs_37547 0 0 0 0 2 GNAO1 chr16:56362543 3'AG 56362543 Downstream 79bp
chr16 56362621 56362621 1 + A G STAD 56362604 + 56362584 56362624 41 AGACACCGAGCCCTTCTCTGCAGAGCTGCTTTCTGCCATGA AGACACCGAGCCCTTCTCTGCAGAGCTGCTTTCTGCCGTGA < 41bp 1 0.489461485599856 1 0.603116035461426 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control GNAO1 ENSG00000087258 CDS Human protein_coding chr16:56362604 chr16:56362621 nonsynonymous SNV 0.997 3 38 hm5C_associated_SNPs_37547 0 0 0 0 2 GNAO1 chr16:56362703 5'GT 56362703 Upstream 83bp
chr19 52819102 52819102 1 + A G STAD 52819117 + 52819097 52819137 41 TCCTGACCTGAATATTAACTCCATGTTGGAGCAAAGGAGGG TCCTGGCCTGAATATTAACTCCATGTTGGAGCAAAGGAGGG < 41bp 1 0.187173973921798 1 0.329226970672607 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF480 ENSG00000198464 CDS Human protein_coding chr19:52819117 chr19:52819102 nonsynonymous SNV 0.099 0 6 hm5C_associated_SNPs_37548 0 0 1 0 1 ZNF480 chr19:52819087 3'AG 52819087 Downstream 16bp
chrX 70517705 70517705 1 + C T STAD 70517707 + 70517687 70517727 41 CAGGAGGAAGAGCGCAGGCGCCGTGAAGAAGAGATGCGGCG CAGGAGGAAGAGCGCAGGTGCCGTGAAGAAGAGATGCGGCG < 41bp 1 0.21523530044196 1 0.251962333917618 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517707 chrX:70517705 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_37550 0 0 1 0 2 NONO chrX:70517686 3'AG 70517686 Downstream 20bp
chrX 70517705 70517705 1 + C T STAD 70517707 + 70517687 70517727 41 CAGGAGGAAGAGCGCAGGCGCCGTGAAGAAGAGATGCGGCG CAGGAGGAAGAGCGCAGGTGCCGTGAAGAAGAGATGCGGCG < 41bp 1 0.21523530044196 1 0.251962333917618 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517707 chrX:70517705 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_37550 0 0 1 0 2 NONO chrX:70517788 5'GT 70517788 Upstream 84bp
chr11 2424091 2424091 1 + G A STAD 2424079 + 2424059 2424099 41 CCCTCACCCCCGTCAGGCCTCCTCCCAGCCACGGTGCAGCC CCCTCACCCCCGTCAGGCCTCCTCCCAGCCACAGTGCAGCC < 41bp 1 0.0476719495994179 1 0.03143510222435 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSSC4 ENSG00000184281 CDS Human protein_coding chr11:2424079 chr11:2424091 synonymous SNV . 0 33 hm5C_associated_SNPs_37551 0 0 1 0 1 TSSC4 chr11:2424075 3'AG 2424075 Downstream 17bp
chr7 44806229 44806229 1 + T C STAD 44806215 + 44806195 44806235 41 CTGCCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCC CTGCCACAGGCGTGATGGGGCCCCCCAGCATGTCCGGAGCC < 41bp 1 0.114189477561323 1 0.160823553800583 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806215 chr7:44806229 synonymous SNV . 0 35 hm5C_associated_SNPs_37552 0 0 0 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 34bp
chr7 44806229 44806229 1 + T C STAD 44806216 + 44806196 44806236 41 TGCCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCG TGCCACAGGCGTGATGGGGCCCCCCAGCATGTCCGGAGCCG < 41bp 1 0.138813656999904 1 0.132248103618622 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806216 chr7:44806229 synonymous SNV . 0 34 hm5C_associated_SNPs_37553 0 0 0 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 34bp
chr7 44806229 44806229 1 + T C STAD 44806217 + 44806197 44806237 41 GCCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGG GCCACAGGCGTGATGGGGCCCCCCAGCATGTCCGGAGCCGG < 41bp 1 0.460224769290993 1 0.248259127140045 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806217 chr7:44806229 synonymous SNV . 0 33 hm5C_associated_SNPs_37554 0 0 0 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 34bp
chr7 44806229 44806229 1 + T C STAD 44806218 + 44806198 44806238 41 CCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGGG CCACAGGCGTGATGGGGCCCCCCAGCATGTCCGGAGCCGGG < 41bp 1 0.120990557109197 1 0.116515219211578 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806218 chr7:44806229 synonymous SNV . 0 32 hm5C_associated_SNPs_37555 0 0 0 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 34bp
chr7 44806229 44806229 1 + T C STAD 44806219 + 44806199 44806239 41 CACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGGGG CACAGGCGTGATGGGGCCCCCCAGCATGTCCGGAGCCGGGG < 41bp 1 0.134923208471007 1 0.39703831076622 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806219 chr7:44806229 synonymous SNV . 0 31 hm5C_associated_SNPs_37556 0 0 0 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 34bp
chr7 44806229 44806229 1 + T C STAD 44806243 + 44806223 44806263 41 CATGTCTGGAGCCGGGGAGGCCCCAGAACCAGCTCTGGACG CATGTCCGGAGCCGGGGAGGCCCCAGAACCAGCTCTGGACG < 41bp 1 0.558211523974927 1 0.609718143939972 experiment 0.883576952050145 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806243 chr7:44806229 synonymous SNV . 0 7 hm5C_associated_SNPs_37557 0 0 0 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 34bp
chr7 44806229 44806229 1 + T C STAD 44806244 + 44806224 44806264 41 ATGTCTGGAGCCGGGGAGGCCCCAGAACCAGCTCTGGACGT ATGTCCGGAGCCGGGGAGGCCCCAGAACCAGCTCTGGACGT < 41bp 1 0.344460966448953 1 0.402929723262787 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806244 chr7:44806229 synonymous SNV . 0 6 hm5C_associated_SNPs_37558 0 0 0 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 34bp
chr7 44806229 44806229 1 + T C STAD 44806245 + 44806225 44806265 41 TGTCTGGAGCCGGGGAGGCCCCAGAACCAGCTCTGGACGTG TGTCCGGAGCCGGGGAGGCCCCAGAACCAGCTCTGGACGTG < 41bp 1 0.578242754810038 1 0.407562792301178 experiment 0.843514490379923 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806245 chr7:44806229 synonymous SNV . 0 5 hm5C_associated_SNPs_37559 0 0 0 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 34bp
chr7 44806229 44806229 1 + T C STAD 44806246 + 44806226 44806266 41 GTCTGGAGCCGGGGAGGCCCCAGAACCAGCTCTGGACGTGA GTCCGGAGCCGGGGAGGCCCCAGAACCAGCTCTGGACGTGA < 41bp 1 0.719790136429466 1 0.841274499893188 experiment 0.560419727141067 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806246 chr7:44806229 synonymous SNV . 0 4 hm5C_associated_SNPs_37560 0 0 0 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 34bp
chr11 86017511 86017511 1 + A G STAD 86017502 + 86017482 86017522 41 GGGAAGCCAAGTGCCATCTTCAAAATTTCAGGTCTTAAATC GGGAAGCCAAGTGCCATCTTCAAAATTTCGGGTCTTAAATC < 41bp 1 0.608189702622391 1 0.509992957115173 experiment 0.783620594755218 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HIKESHI ENSG00000149196 CDS Human protein_coding chr11:86017502 chr11:86017511 synonymous SNV . 0 30 hm5C_associated_SNPs_37561 0 0 0 3 1 HIKESHI chr11:86017524 5'GT 86017524 Upstream 14bp
chr19 49685882 49685882 1 + G T STAD 49685868 + 49685848 49685888 41 AAGCTTCCCTCATGGACGCCCTGCTGAATGACCGGCCTGAG AAGCTTCCCTCATGGACGCCCTGCTGAATGACCGTCCTGAG < 41bp 1 0.393019565921284 1 0.0922068357467651 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49685868 chr19:49685882 synonymous SNV . 0 35 hm5C_associated_SNPs_37562 0 0 1 0 1 TRPM4 chr19:49685835 3'AG 49685835 Downstream 48bp
chr17 16332204 16332204 1 + C T STAD 16332211 + 16332191 16332231 41 GTACCTGCCCCTGCTTGTGTCTGCGCTGGTGCTGGGCTGGC GTACCTGCCCCTGTTTGTGTCTGCGCTGGTGCTGGGCTGGC < 41bp 1 0.658088749569967 1 0.746399343013763 experiment 0.683822500860066 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16332211 chr17:16332204 nonsynonymous SNV 0.912 5 14 hm5C_associated_SNPs_37564 0 0 0 0 2 TRPV2 chr17:16332131 3'AG 16332131 Downstream 74bp
chr17 16332204 16332204 1 + C T STAD 16332211 + 16332191 16332231 41 GTACCTGCCCCTGCTTGTGTCTGCGCTGGTGCTGGGCTGGC GTACCTGCCCCTGTTTGTGTCTGCGCTGGTGCTGGGCTGGC < 41bp 1 0.658088749569967 1 0.746399343013763 experiment 0.683822500860066 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16332211 chr17:16332204 nonsynonymous SNV 0.912 5 14 hm5C_associated_SNPs_37564 0 0 0 0 2 TRPV2 chr17:16332296 5'GT 16332296 Upstream 93bp
chr3 47456465 47456465 1 - C A STAD 47456479 - 47456459 47456499 41 GGCCTTTTGTCCTCAGGGACCCCAGGGCGGGGCAGTTCCCC GGCCTTTTGTCCTCAGGGACCCCAGGGCGGGGCATTTCCCC < 41bp 1 0.179628388555803 1 0.252357542514801 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SCAP ENSG00000114650 CDS Human protein_coding chr3:47456479 chr3:47456465 nonsynonymous SNV 0.963 3 35 hm5C_associated_SNPs_37565 0 0 1 0 1 SCAP chr3:47456483 3'AG 47456483 Downstream 19bp
chr17 7476162 7476162 1 + G A STAD 7476180 + 7476160 7476200 41 ATGTCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCA ATATCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCA < 41bp 1 0.348131850167645 1 0.151061087846756 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7476180 chr17:7476162 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_37567 0 0 1 0 1 EIF4A1 chr17:7476182 5'GT 7476182 Upstream 21bp
chr17 7476162 7476162 1 + G A STAD 7476181 + 7476161 7476201 41 TGTCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCAA TATCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCAA < 41bp 1 0.675393906285368 1 0.492664247751236 experiment 0.649212187429263 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7476181 chr17:7476162 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_37568 0 0 1 0 1 EIF4A1 chr17:7476182 5'GT 7476182 Upstream 21bp
chrX 41027344 41027344 1 + A G STAD 41027349 + 41027329 41027369 41 GTTTTGGATGGTGACAAAGACAGTGTTAATTGTGCAAGACA GTTTTGGATGGTGACGAAGACAGTGTTAATTGTGCAAGACA < 41bp 1 0.322410504809931 1 0.351355195045471 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41027349 chrX:41027344 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_37569 0 0 1 0 1 USP9X chrX:41027260 3'AG 41027260 Downstream 85bp
chr12 132326256 132326256 1 + T C STAD 132326257 + 132326237 132326277 41 GTGGCCGCTGCACACTCCATCATGCGGCCGTACTACCAGGG GTGGCCGCTGCACACTCCACCATGCGGCCGTACTACCAGGG < 41bp 1 0.203663876372109 1 0.431082487106323 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132326257 chr12:132326256 nonsynonymous SNV 0.670 3 20 hm5C_associated_SNPs_37570 0 0 0 0 2 MMP17 chr12:132326169 3'AG 132326169 Downstream 88bp
chr12 132326256 132326256 1 + T C STAD 132326257 + 132326237 132326277 41 GTGGCCGCTGCACACTCCATCATGCGGCCGTACTACCAGGG GTGGCCGCTGCACACTCCACCATGCGGCCGTACTACCAGGG < 41bp 1 0.203663876372109 1 0.431082487106323 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132326257 chr12:132326256 nonsynonymous SNV 0.670 3 20 hm5C_associated_SNPs_37570 0 0 0 0 2 MMP17 chr12:132326345 5'GT 132326345 Upstream 90bp
chr19 42397364 42397364 1 + G A STAD 42397351 + 42397331 42397371 41 TCTTCCTCCTACAGACATACCATCTCTACCGACGAAGAAAA TCTTCCTCCTACAGACATACCATCTCTACCGACAAAGAAAA < 41bp 1 0.0602606018685697 1 0.0283128321170807 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42397351 chr19:42397364 nonsynonymous SNV 0.994 5 34 hm5C_associated_SNPs_37571 0 0 1 0 2 ARHGEF1 chr19:42397345 3'AG 42397345 Downstream 20bp
chr19 42397364 42397364 1 + G A STAD 42397351 + 42397331 42397371 41 TCTTCCTCCTACAGACATACCATCTCTACCGACGAAGAAAA TCTTCCTCCTACAGACATACCATCTCTACCGACAAAGAAAA < 41bp 1 0.0602606018685697 1 0.0283128321170807 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42397351 chr19:42397364 nonsynonymous SNV 0.994 5 34 hm5C_associated_SNPs_37571 0 0 1 0 2 ARHGEF1 chr19:42397374 5'GT 42397374 Upstream 11bp
chr19 4323385 4323385 1 + G A STAD 4323383 + 4323363 4323403 41 ATGCCCGCACCAAACAAGTGCTGCACACTTTCAAGACCAGG ATGCCCGCACCAAACAAGTGCTACACACTTTCAAGACCAGG < 41bp 1 0.231214203366065 1 0.203032821416855 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FSD1 ENSG00000105255 CDS Human protein_coding chr19:4323383 chr19:4323385 nonsynonymous SNV 0.765 0 23 hm5C_associated_SNPs_37573 0 0 1 0 2 FSD1 chr19:4323345 3'AG 4323345 Downstream 41bp
chr19 4323385 4323385 1 + G A STAD 4323383 + 4323363 4323403 41 ATGCCCGCACCAAACAAGTGCTGCACACTTTCAAGACCAGG ATGCCCGCACCAAACAAGTGCTACACACTTTCAAGACCAGG < 41bp 1 0.231214203366065 1 0.203032821416855 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FSD1 ENSG00000105255 CDS Human protein_coding chr19:4323383 chr19:4323385 nonsynonymous SNV 0.765 0 23 hm5C_associated_SNPs_37573 0 0 1 0 2 FSD1 chr19:4323433 5'GT 4323433 Upstream 49bp
chr2 47233862 47233862 1 + A G STAD 47233842 + 47233822 47233862 41 CTTTGGTACCAGGTGGCCCTCTCCATGGTGGCTTGTGGGAA CTTTGGTACCAGGTGGCCCTCTCCATGGTGGCTTGTGGGAG < 41bp 1 0.770044940213138 1 0.97633570432663 experiment 0.459910119573725 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47233842 chr2:47233862 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_37574 0 0 1 0 2 TTC7A chr2:47233780 3'AG 47233780 Downstream 83bp
chr2 47233862 47233862 1 + A G STAD 47233842 + 47233822 47233862 41 CTTTGGTACCAGGTGGCCCTCTCCATGGTGGCTTGTGGGAA CTTTGGTACCAGGTGGCCCTCTCCATGGTGGCTTGTGGGAG < 41bp 1 0.770044940213138 1 0.97633570432663 experiment 0.459910119573725 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47233842 chr2:47233862 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_37574 0 0 1 0 2 TTC7A chr2:47233863 5'GT 47233863 Upstream 2bp
chr19 35504571 35504571 1 + A C STAD 35504562 + 35504542 35504582 41 CGTGGCCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGA CGTGGCCATGTCACGCCCAACCTTTCCCGCGCCAGCAGCGA < 41bp 1 0.0210899222925039 1 0.0497511625289917 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504562 chr19:35504571 synonymous SNV . 0 30 hm5C_associated_SNPs_37575 0 0 1 0 1 GRAMD1A chr19:35504595 5'GT 35504595 Upstream 25bp
chr19 35504571 35504571 1 + A C STAD 35504567 + 35504547 35504587 41 CCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGACGCAG CCATGTCACGCCCAACCTTTCCCGCGCCAGCAGCGACGCAG < 41bp 1 0.372333785180075 1 0.0645481050014496 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504567 chr19:35504571 synonymous SNV . 0 25 hm5C_associated_SNPs_37576 0 0 1 0 1 GRAMD1A chr19:35504595 5'GT 35504595 Upstream 25bp
chr14 64990077 64990077 1 + C T STAD 64990092 + 64990072 64990112 41 GAGAGCGTCAGTTGCGACTGCACAATGATATGCACAAAGGC GAGAGTGTCAGTTGCGACTGCACAATGATATGCACAAAGGC < 41bp 1 0.650276879289669 1 0.635713934898376 experiment 0.699446241420662 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZBTB1 ENSG00000126804 CDS Human protein_coding chr14:64990092 chr14:64990077 nonsynonymous SNV 0.998 3 6 hm5C_associated_SNPs_37577 0 0 1 0 1 ZBTB1 chr14:64990120 5'GT 64990120 Upstream 44bp
chr19 36273737 36273737 1 + A C STAD 36273734 + 36273714 36273754 41 CCAACACCAGCATGCATGCCCGCAACCTGGCCATTGTCTGG CCAACACCAGCATGCATGCCCGCCACCTGGCCATTGTCTGG < 41bp 1 0.592548448298799 1 0.433255851268768 experiment 0.814903103402403 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36273734 chr19:36273737 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_37578 0 0 0 0 2 ARHGAP33 chr19:36273664 3'AG 36273664 Downstream 74bp
chr19 36273737 36273737 1 + A C STAD 36273734 + 36273714 36273754 41 CCAACACCAGCATGCATGCCCGCAACCTGGCCATTGTCTGG CCAACACCAGCATGCATGCCCGCCACCTGGCCATTGTCTGG < 41bp 1 0.592548448298799 1 0.433255851268768 experiment 0.814903103402403 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36273734 chr19:36273737 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_37578 0 0 0 0 2 ARHGAP33 chr19:36273771 5'GT 36273771 Upstream 35bp
chr17 77077146 77077146 1 + A T STAD 77077130 + 77077110 77077150 41 AAAGTGGGCAGCTCAAATGGCAAGACGAACTCAACCAGCAC AAAGTGGGCAGCTCAAATGGCAAGACGAACTCAACCTGCAC < 41bp 1 0.655068926122156 1 0.605586230754852 experiment 0.689862147755687 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ENGASE ENSG00000167280 CDS Human protein_coding chr17:77077130 chr17:77077146 nonsynonymous SNV 0.036 0 37 hm5C_associated_SNPs_37579 0 0 1 0 1 ENGASE chr17:77077155 5'GT 77077155 Upstream 10bp
chr2 102486168 102486168 1 + G A STAD 102486184 + 102486164 102486204 41 CAGTGAGGAGTCGGGGACGACGGATGAGGAGGACGACGATG CAGTAAGGAGTCGGGGACGACGGATGAGGAGGACGACGATG < 41bp 1 0.717617517122404 1 0.638346433639526 experiment 0.564764965755192 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102486184 chr2:102486168 nonsynonymous SNV 0.999 4 5 hm5C_associated_SNPs_37581 0 0 1 0 1 MAP4K4 chr2:102486084 3'AG 102486084 Downstream 85bp
chr13 28752031 28752031 1 + T G STAD 28752016 + 28751996 28752036 41 TTTCAGATCCTCTAACATCACCTGCTTCATCCTTGTTTAAT TTTCAGATCCTCTAACATCACCTGCTTCATCCTTGGTTAAT < 41bp 1 0.105954715027167 1 0.0452249348163605 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752016 chr13:28752031 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_37583 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 30bp
chr13 28752031 28752031 1 + T G STAD 28752016 + 28751996 28752036 41 TTTCAGATCCTCTAACATCACCTGCTTCATCCTTGTTTAAT TTTCAGATCCTCTAACATCACCTGCTTCATCCTTGGTTAAT < 41bp 1 0.105954715027167 1 0.0452249348163605 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752016 chr13:28752031 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_37583 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 42bp
chr13 28752031 28752031 1 + T G STAD 28752017 + 28751997 28752037 41 TTCAGATCCTCTAACATCACCTGCTTCATCCTTGTTTAATG TTCAGATCCTCTAACATCACCTGCTTCATCCTTGGTTAATG < 41bp 1 0.250948648923868 1 0.0403040647506714 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752017 chr13:28752031 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_37584 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 30bp
chr13 28752031 28752031 1 + T G STAD 28752017 + 28751997 28752037 41 TTCAGATCCTCTAACATCACCTGCTTCATCCTTGTTTAATG TTCAGATCCTCTAACATCACCTGCTTCATCCTTGGTTAATG < 41bp 1 0.250948648923868 1 0.0403040647506714 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752017 chr13:28752031 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_37584 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 42bp
chr13 28752031 28752031 1 + T G STAD 28752020 + 28752000 28752040 41 AGATCCTCTAACATCACCTGCTTCATCCTTGTTTAATGACT AGATCCTCTAACATCACCTGCTTCATCCTTGGTTAATGACT < 41bp 1 0.107867828979762 1 0.153765916824341 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752020 chr13:28752031 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_37585 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 30bp
chr13 28752031 28752031 1 + T G STAD 28752020 + 28752000 28752040 41 AGATCCTCTAACATCACCTGCTTCATCCTTGTTTAATGACT AGATCCTCTAACATCACCTGCTTCATCCTTGGTTAATGACT < 41bp 1 0.107867828979762 1 0.153765916824341 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752020 chr13:28752031 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_37585 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 42bp
chr13 28752031 28752031 1 + T G STAD 28752023 + 28752003 28752043 41 TCCTCTAACATCACCTGCTTCATCCTTGTTTAATGACTTTG TCCTCTAACATCACCTGCTTCATCCTTGGTTAATGACTTTG < 41bp 1 0.101570584378885 1 0.0782935321331024 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752023 chr13:28752031 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_37586 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 30bp
chr13 28752031 28752031 1 + T G STAD 28752023 + 28752003 28752043 41 TCCTCTAACATCACCTGCTTCATCCTTGTTTAATGACTTTG TCCTCTAACATCACCTGCTTCATCCTTGGTTAATGACTTTG < 41bp 1 0.101570584378885 1 0.0782935321331024 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752023 chr13:28752031 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_37586 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 42bp
chr13 28752031 28752031 1 + T G STAD 28752026 + 28752006 28752046 41 TCTAACATCACCTGCTTCATCCTTGTTTAATGACTTTGGTG TCTAACATCACCTGCTTCATCCTTGGTTAATGACTTTGGTG < 41bp 1 0.115542597231094 1 0.397342473268509 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752026 chr13:28752031 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_37587 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 30bp
chr13 28752031 28752031 1 + T G STAD 28752026 + 28752006 28752046 41 TCTAACATCACCTGCTTCATCCTTGTTTAATGACTTTGGTG TCTAACATCACCTGCTTCATCCTTGGTTAATGACTTTGGTG < 41bp 1 0.115542597231094 1 0.397342473268509 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752026 chr13:28752031 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_37587 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 42bp
chr13 28752031 28752031 1 + T G STAD 28752027 + 28752007 28752047 41 CTAACATCACCTGCTTCATCCTTGTTTAATGACTTTGGTGC CTAACATCACCTGCTTCATCCTTGGTTAATGACTTTGGTGC < 41bp 1 0.336384241709385 1 0.230702131986618 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752027 chr13:28752031 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_37588 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 30bp
chr13 28752031 28752031 1 + T G STAD 28752027 + 28752007 28752047 41 CTAACATCACCTGCTTCATCCTTGTTTAATGACTTTGGTGC CTAACATCACCTGCTTCATCCTTGGTTAATGACTTTGGTGC < 41bp 1 0.336384241709385 1 0.230702131986618 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752027 chr13:28752031 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_37588 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 42bp
chr13 28752031 28752031 1 + T G STAD 28752051 + 28752031 28752071 41 TTTAATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAA GTTAATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAA < 41bp 1 0.596721199428219 1 0.316341042518616 experiment 0.806557601143562 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752051 chr13:28752031 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_37589 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 30bp
chr13 28752031 28752031 1 + T G STAD 28752051 + 28752031 28752071 41 TTTAATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAA GTTAATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAA < 41bp 1 0.596721199428219 1 0.316341042518616 experiment 0.806557601143562 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752051 chr13:28752031 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_37589 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 42bp
chr17 4799503 4799503 1 + C T STAD 4799505 + 4799485 4799525 41 CAGTCCTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCGA CAGTCCTTTGCCGACCTCTCCCACCGCCCTCTGCTGGTCGA < 41bp 1 0.0953752962531251 1 0.038821667432785 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799505 chr17:4799503 nonsynonymous SNV 0.992 3 19 hm5C_associated_SNPs_37590 0 0 1 0 1 MINK1 chr17:4799488 3'AG 4799488 Downstream 16bp
chr17 4799503 4799503 1 + C T STAD 4799508 + 4799488 4799528 41 TCCTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCGACCT TCCTTTGCCGACCTCTCCCACCGCCCTCTGCTGGTCGACCT < 41bp 1 0.167390112976126 1 0.431831687688828 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799508 chr17:4799503 nonsynonymous SNV 0.992 3 16 hm5C_associated_SNPs_37591 0 0 1 0 1 MINK1 chr17:4799488 3'AG 4799488 Downstream 16bp
chr3 99897207 99897207 1 + A G STAD 99897188 + 99897168 99897208 41 AACTTCTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGAA AACTTCTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGGA < 41bp 1 0.204633838123062 1 0.200417578220367 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMSS1 ENSG00000184220 CDS Human protein_coding chr3:99897188 chr3:99897207 nonsynonymous SNV 0.999 0 40 hm5C_associated_SNPs_37592 0 0 1 0 1 CMSS1 chr3:99897149 3'AG 99897149 Downstream 59bp
chr3 99897207 99897207 1 + A G STAD 99897190 + 99897170 99897210 41 CTTCTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGAATC CTTCTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGGATC < 41bp 1 0.287026897417794 1 0.194734871387482 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CMSS1 ENSG00000184220 CDS Human protein_coding chr3:99897190 chr3:99897207 nonsynonymous SNV 0.999 0 38 hm5C_associated_SNPs_37593 0 0 1 0 1 CMSS1 chr3:99897149 3'AG 99897149 Downstream 59bp
chr11 20077454 20077454 1 + G A STAD 20077463 + 20077443 20077483 41 CTGGATGAGAAGAGCAGAACCATGAGCCGTTCAGGCTCATT CTGGATGAGAAAAGCAGAACCATGAGCCGTTCAGGCTCATT < 41bp 1 0.315203203078212 1 0.289376378059387 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74775;RNA-BisSeq;SNB19;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:20077463 chr11:20077454 synonymous SNV . 0 12 hm5C_associated_SNPs_37594 0 0 0 0 1 NAV2 chr11:20077503 5'GT 20077503 Upstream 50bp
chr5 17275371 17275371 1 + G A STAD 17275370 + 17275350 17275390 41 AAGAAGGGCTACAATGTGAACGACGAGAAAGCCAAGGAGAA AAGAAGGGCTACAATGTGAACAACGAGAAAGCCAAGGAGAA < 41bp 1 0.497996304880379 1 0.314949661493301 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275370 chr5:17275371 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_37595 0 0 1 0 1 BASP1 chr5:17275317 3'AG 17275317 Downstream 55bp
chr5 17275371 17275371 1 + G A STAD 17275373 + 17275353 17275393 41 AAGGGCTACAATGTGAACGACGAGAAAGCCAAGGAGAAAGA AAGGGCTACAATGTGAACAACGAGAAAGCCAAGGAGAAAGA < 41bp 1 0.77827647586754 1 0.632195651531219 experiment 0.44344704826492 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275373 chr5:17275371 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_37596 0 0 1 0 1 BASP1 chr5:17275317 3'AG 17275317 Downstream 55bp
chr5 17275371 17275371 1 + G A STAD 17275381 + 17275361 17275401 41 CAATGTGAACGACGAGAAAGCCAAGGAGAAAGACAAGAAGG CAATGTGAACAACGAGAAAGCCAAGGAGAAAGACAAGAAGG < 41bp 1 0.374111086805224 1 0.465021044015884 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275381 chr5:17275371 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_37597 0 0 1 0 1 BASP1 chr5:17275317 3'AG 17275317 Downstream 55bp
chr19 50753938 50753938 1 + C T STAD 50753921 + 50753901 50753941 41 CTGCGGGATCAGGCCGACTTCAGTGTTCTCCACTACGCGGG CTGCGGGATCAGGCCGACTTCAGTGTTCTCCACTACGTGGG < 41bp 1 0.634233012611704 1 0.602940142154694 experiment 0.731533974776592 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50753921 chr19:50753938 nonsynonymous SNV 0.976 4 38 hm5C_associated_SNPs_37598 0 0 0 0 1 MYH14 chr19:50753945 5'GT 50753945 Upstream 8bp
chr2 231326099 231326099 1 + A G STAD 231326090 + 231326070 231326110 41 CAAAAGTTGAGTGCCAAGCCCAAGCAAGAACTCATCATAAC CAAAAGTTGAGTGCCAAGCCCAAGCAAGAGCTCATCATAAC < 41bp 1 0.320506932423941 1 0.294684708118439 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SP100 ENSG00000067066 CDS Human protein_coding chr2:231326090 chr2:231326099 nonsynonymous SNV 0.006 0 30 hm5C_associated_SNPs_37599 0 0 0 0 1 SP100 chr2:231326129 5'GT 231326129 Upstream 31bp
chr7 44806205 44806205 1 + C T STAD 44806215 + 44806195 44806235 41 CTGCCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCC CTGCCACAGGTGTGATGGGGCCCCCCAGCATGTCTGGAGCC < 41bp 1 0.111932309045726 1 0.104822546243668 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806215 chr7:44806205 synonymous SNV . 0 11 hm5C_associated_SNPs_37603 0 0 0 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 58bp
chr7 44806205 44806205 1 + C T STAD 44806216 + 44806196 44806236 41 TGCCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCG TGCCACAGGTGTGATGGGGCCCCCCAGCATGTCTGGAGCCG < 41bp 1 0.138300120345318 1 0.160842657089233 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806216 chr7:44806205 synonymous SNV . 0 10 hm5C_associated_SNPs_37604 0 0 0 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 58bp
chr7 44806205 44806205 1 + C T STAD 44806217 + 44806197 44806237 41 GCCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGG GCCACAGGTGTGATGGGGCCCCCCAGCATGTCTGGAGCCGG < 41bp 1 0.484395396144589 1 0.221127420663834 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806217 chr7:44806205 synonymous SNV . 0 9 hm5C_associated_SNPs_37605 0 0 0 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 58bp
chr7 44806205 44806205 1 + C T STAD 44806218 + 44806198 44806238 41 CCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGGG CCACAGGTGTGATGGGGCCCCCCAGCATGTCTGGAGCCGGG < 41bp 1 0.158773345542269 1 0.162667661905289 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806218 chr7:44806205 synonymous SNV . 0 8 hm5C_associated_SNPs_37606 0 0 0 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 58bp
chr7 44806205 44806205 1 + C T STAD 44806219 + 44806199 44806239 41 CACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGGGG CACAGGTGTGATGGGGCCCCCCAGCATGTCTGGAGCCGGGG < 41bp 1 0.107463541209994 1 0.489725738763809 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806219 chr7:44806205 synonymous SNV . 0 7 hm5C_associated_SNPs_37607 0 0 0 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 58bp
chr19 804843 804843 1 + C T STAD 804834 + 804814 804854 41 GCCCGGGACCTGCAGATTTTCTCCAAGTTCGGCACAGTGTT GCCCGGGACCTGCAGATTTTCTCCAAGTTTGGCACAGTGTT < 41bp 1 0.798037177864039 1 0.939312696456909 experiment 0.403925644271923 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804834 chr19:804843 synonymous SNV . 0 30 hm5C_associated_SNPs_37608 0 0 1 2 1 PTBP1 chr19:804829 3'AG 804829 Downstream 15bp
chrX 48399811 48399811 1 + C T STAD 48399810 + 48399790 48399830 41 GTGTTGCAGCACATCCTCATCCGAGCCTTTGATTTGAGTGG GTGTTGCAGCACATCCTCATCTGAGCCTTTGATTTGAGTGG < 41bp 1 0.570260983562444 1 0.418879240751266 experiment 0.859478032875112 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399810 chrX:48399811 stopgain 1.000 0 22 hm5C_associated_SNPs_37610 0 0 0 0 3 TBC1D25 chrX:48399721 3'AG 48399721 Downstream 91bp
chrX 48399811 48399811 1 + C T STAD 48399810 + 48399790 48399830 41 GTGTTGCAGCACATCCTCATCCGAGCCTTTGATTTGAGTGG GTGTTGCAGCACATCCTCATCTGAGCCTTTGATTTGAGTGG < 41bp 1 0.570260983562444 1 0.418879240751266 experiment 0.859478032875112 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399810 chrX:48399811 stopgain 1.000 0 22 hm5C_associated_SNPs_37610 0 0 0 0 3 TBC1D25 chrX:48399830 5'GT 48399830 Upstream 20bp
chrX 48399811 48399811 1 + C T STAD 48399810 + 48399790 48399830 41 GTGTTGCAGCACATCCTCATCCGAGCCTTTGATTTGAGTGG GTGTTGCAGCACATCCTCATCTGAGCCTTTGATTTGAGTGG < 41bp 1 0.570260983562444 1 0.418879240751266 experiment 0.859478032875112 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399810 chrX:48399811 stopgain 1.000 0 22 hm5C_associated_SNPs_37610 0 0 0 0 3 TBC1D25 chrX:48399901 5'GT 48399901 Upstream 91bp
chr11 598418 598418 1 + G A STAD 598413 + 598393 598433 41 GTCTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGCGACTG GTCTTCCCTGCTGGATGAAGCCATCAAGGCTGTGGCGACTG < 41bp 1 0.100167963917179 1 0.146936625242233 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:598413 chr11:598418 nonsynonymous SNV 0.053 4 26 hm5C_associated_SNPs_37614 0 0 1 0 2 PHRF1 chr11:598373 3'AG 598373 Downstream 46bp
chr11 598418 598418 1 + G A STAD 598413 + 598393 598433 41 GTCTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGCGACTG GTCTTCCCTGCTGGATGAAGCCATCAAGGCTGTGGCGACTG < 41bp 1 0.100167963917179 1 0.146936625242233 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:598413 chr11:598418 nonsynonymous SNV 0.053 4 26 hm5C_associated_SNPs_37614 0 0 1 0 2 PHRF1 chr11:598502 5'GT 598502 Upstream 85bp
chr7 99159544 99159544 1 + G A STAD 99159535 + 99159515 99159555 41 ACCTGTTCCTCAGGTGCCTGCTCTTCCCCGTGAGGGAAGCC ACCTGTTCCTCAGGTGCCTGCTCTTCCCCATGAGGGAAGCC < 41bp 1 0.198647420784369 1 0.0892913043498993 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF655 ENSG00000197343 CDS Human protein_coding chr7:99159535 chr7:99159544 nonsynonymous SNV 0.994 0 30 hm5C_associated_SNPs_37615 0 0 1 0 2 ZNF655 chr7:99159511 3'AG 99159511 Downstream 34bp
chr7 99159544 99159544 1 + G A STAD 99159535 + 99159515 99159555 41 ACCTGTTCCTCAGGTGCCTGCTCTTCCCCGTGAGGGAAGCC ACCTGTTCCTCAGGTGCCTGCTCTTCCCCATGAGGGAAGCC < 41bp 1 0.198647420784369 1 0.0892913043498993 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF655 ENSG00000197343 CDS Human protein_coding chr7:99159535 chr7:99159544 nonsynonymous SNV 0.994 0 30 hm5C_associated_SNPs_37615 0 0 1 0 2 ZNF655 chr7:99159596 5'GT 99159596 Upstream 53bp
chr10 75871828 75871828 1 + G A STAD 75871841 + 75871821 75871861 41 TGGCCGCGGCTCAGTCCTTGCATCGGGAAGCTACCAAGTGG TGGCCGCAGCTCAGTCCTTGCATCGGGAAGCTACCAAGTGG < 41bp 1 0.332023357849618 1 0.121564567089081 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75871841 chr10:75871828 synonymous SNV . 0 8 hm5C_associated_SNPs_37620 0 0 0 0 1 VCL chr10:75871870 5'GT 75871870 Upstream 43bp
chr19 3192527 3192527 1 + C T STAD 3192510 + 3192490 3192530 41 CACGGAGGCGCGCACGATGGCGGCGGAGGTGCTGAGCCGCC CACGGAGGCGCGCACGATGGCGGCGGAGGTGCTGAGCTGCC < 41bp 1 0.735183307091539 1 0.795396625995636 experiment 0.529633385816922 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCLN ENSG00000125912 CDS Human protein_coding chr19:3192510 chr19:3192527 nonsynonymous SNV 0.998 3 38 hm5C_associated_SNPs_37621 0 0 0 0 1 NCLN chr19:3192468 3'AG 3192468 Downstream 60bp
chr19 3192527 3192527 1 + C T STAD 3192513 + 3192493 3192533 41 GGAGGCGCGCACGATGGCGGCGGAGGTGCTGAGCCGCCGCT GGAGGCGCGCACGATGGCGGCGGAGGTGCTGAGCTGCCGCT < 41bp 1 0.724765539490772 1 0.778958797454834 experiment 0.550468921018455 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCLN ENSG00000125912 CDS Human protein_coding chr19:3192513 chr19:3192527 nonsynonymous SNV 0.998 3 35 hm5C_associated_SNPs_37622 0 0 0 0 1 NCLN chr19:3192468 3'AG 3192468 Downstream 60bp
chr15 91358371 91358371 1 + A T STAD 91358367 + 91358347 91358387 41 TAGAAAGATATCTTCCAAAACGAAATCCTCCAGCATCATTG TAGAAAGATATCTTCCAAAACGAATTCCTCCAGCATCATTG < 41bp 1 0.336322649875456 1 0.0383776426315308 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91358367 chr15:91358371 nonsynonymous SNV 0.068 2 25 hm5C_associated_SNPs_37624 0 0 1 0 1 BLM chr15:91358332 3'AG 91358332 Downstream 40bp
chr12 109684178 109684178 1 + C T STAD 109684168 + 109684148 109684188 41 TCCCAAAATTTACGTGGCAGCCAACAGTGGCGCCCGTATTG TCCCAAAATTTACGTGGCAGCCAACAGTGGTGCCCGTATTG < 41bp 1 0.0280663218792297 1 0.436821520328522 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109684168 chr12:109684178 synonymous SNV . 0 31 hm5C_associated_SNPs_37626 0 0 0 0 1 ACACB chr12:109684253 5'GT 109684253 Upstream 76bp
chr16 457459 457459 1 + G A STAD 457472 + 457452 457492 41 GGCCGGCGCTGCCTCCCTCTCTCTATGGACGTCCGAGCGCC GGCCGGCACTGCCTCCCTCTCTCTATGGACGTCCGAGCGCC < 41bp 1 0.773780036541867 1 0.931281328201294 experiment 0.452439926916267 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout DECR2 ENSG00000242612 CDS Human other chr16:457472 chr16:457459 nonsynonymous SNV 0.377 0 8 hm5C_associated_SNPs_37627 0 0 1 0 2 DECR2 chr16:457380 3'AG 457380 Downstream 80bp
chr16 457459 457459 1 + G A STAD 457472 + 457452 457492 41 GGCCGGCGCTGCCTCCCTCTCTCTATGGACGTCCGAGCGCC GGCCGGCACTGCCTCCCTCTCTCTATGGACGTCCGAGCGCC < 41bp 1 0.773780036541867 1 0.931281328201294 experiment 0.452439926916267 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout DECR2 ENSG00000242612 CDS Human protein_coding chr16:457472 chr16:457459 nonsynonymous SNV 0.377 0 8 hm5C_associated_SNPs_37627 0 0 1 0 2 DECR2 chr16:457425 3'AG 457425 Downstream 35bp
chr5 167826546 167826546 1 + A G STAD 167826565 + 167826545 167826585 41 AAGAGCGTGGCTTTCAGACCCTGAAGAAGTAAGTACACCCT AGGAGCGTGGCTTTCAGACCCTGAAGAAGTAAGTACACCCT < 41bp 1 0.699821605110868 1 0.444326400756836 experiment 0.600356789778264 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WWC1 ENSG00000113645 CDS Human protein_coding chr5:167826565 chr5:167826546 synonymous SNV . 0 2 hm5C_associated_SNPs_37629 0 0 1 0 2 WWC1 chr5:167826493 3'AG 167826493 Downstream 54bp
chr5 167826546 167826546 1 + A G STAD 167826565 + 167826545 167826585 41 AAGAGCGTGGCTTTCAGACCCTGAAGAAGTAAGTACACCCT AGGAGCGTGGCTTTCAGACCCTGAAGAAGTAAGTACACCCT < 41bp 1 0.699821605110868 1 0.444326400756836 experiment 0.600356789778264 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WWC1 ENSG00000113645 CDS Human protein_coding chr5:167826565 chr5:167826546 synonymous SNV . 0 2 hm5C_associated_SNPs_37629 0 0 1 0 2 WWC1 chr5:167826572 5'GT 167826572 Upstream 27bp
chr20 57566121 57566121 1 + G A STAD 57566128 + 57566108 57566148 41 TGGACCCTCCTCCGGTTGAACTTGTAAGTTGCTTCTCAAGA TGGACCCTCCTCCAGTTGAACTTGTAAGTTGCTTCTCAAGA < 41bp 1 0.18300119361395 1 0.0509389936923981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NELFCD ENSG00000101158 CDS Human protein_coding chr20:57566128 chr20:57566121 synonymous SNV . 0 14 hm5C_associated_SNPs_37631 0 0 1 0 1 NELFCD chr20:57566130 5'GT 57566130 Upstream 10bp
chr1 151493103 151493103 1 + C A STAD 151493121 + 151493101 151493141 41 GGCAGGGCAGGGTGAGCTTACCCGAAAAGTGGAGGAGCTAC GGAAGGGCAGGGTGAGCTTACCCGAAAAGTGGAGGAGCTAC < 41bp 1 0.686484640070554 1 0.220274567604065 experiment 0.627030719858892 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CGN ENSG00000143375 CDS Human protein_coding chr1:151493121 chr1:151493103 nonsynonymous SNV 0.025 0 3 hm5C_associated_SNPs_37632 0 0 0 0 2 CGN chr1:151493072 3'AG 151493072 Downstream 32bp
chr1 151493103 151493103 1 + C A STAD 151493121 + 151493101 151493141 41 GGCAGGGCAGGGTGAGCTTACCCGAAAAGTGGAGGAGCTAC GGAAGGGCAGGGTGAGCTTACCCGAAAAGTGGAGGAGCTAC < 41bp 1 0.686484640070554 1 0.220274567604065 experiment 0.627030719858892 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CGN ENSG00000143375 CDS Human protein_coding chr1:151493121 chr1:151493103 nonsynonymous SNV 0.025 0 3 hm5C_associated_SNPs_37632 0 0 0 0 2 CGN chr1:151493167 5'GT 151493167 Upstream 65bp
chr20 3802809 3802809 1 + T A STAD 3802800 + 3802780 3802820 41 CTCATTCACACCTTGAGGGCCCCGAATACTGAGGACACGGG CTCATTCACACCTTGAGGGCCCCGAATACAGAGGACACGGG < 41bp 1 0.427365753053086 1 0.0344438254833221 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5S1 ENSG00000125843 CDS Human protein_coding chr20:3802800 chr20:3802809 synonymous SNV . 0 30 hm5C_associated_SNPs_37634 0 0 1 0 1 AP5S1 chr20:3802749 3'AG 3802749 Downstream 61bp
chr1 6681475 6681475 1 + C T STAD 6681488 + 6681468 6681508 41 CAGATGACGATTCCTGGGACCTCGTGACCTGCTTCTGCATG CAGATGATGATTCCTGGGACCTCGTGACCTGCTTCTGCATG < 41bp 1 0.451450769607199 1 0.0207436978816986 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF13 ENSG00000116273 CDS Human protein_coding chr1:6681488 chr1:6681475 synonymous SNV . 0 8 hm5C_associated_SNPs_37636 0 0 1 0 1 PHF13 chr1:6681471 3'AG 6681471 Downstream 5bp
chr15 99673025 99673025 1 + G A STAD 99673023 + 99673003 99673043 41 GGAGCTCTCGGTGTGTCTGACCGTGGTTCCTGGAGAGACGC GGAGCTCTCGGTGTGTCTGACCATGGTTCCTGGAGAGACGC < 41bp 1 0.154430952813723 1 0.106893628835678 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99673023 chr15:99673025 nonsynonymous SNV 0.101 0 23 hm5C_associated_SNPs_37637 0 0 1 0 1 SYNM chr15:99672955 3'AG 99672955 Downstream 71bp
chr15 41555004 41555004 1 + G A STAD 41554985 + 41554965 41555005 41 TAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCGC TAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCAC < 41bp 1 0.285328414018218 1 0.203609466552734 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHP1 ENSG00000187446 CDS Human protein_coding chr15:41554985 chr15:41555004 nonsynonymous SNV 0.999 2 40 hm5C_associated_SNPs_37638 0 0 1 0 2 CHP1 chr15:41554954 3'AG 41554954 Downstream 51bp
chr15 41555004 41555004 1 + G A STAD 41554985 + 41554965 41555005 41 TAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCGC TAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCAC < 41bp 1 0.285328414018218 1 0.203609466552734 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHP1 ENSG00000187446 CDS Human protein_coding chr15:41554985 chr15:41555004 nonsynonymous SNV 0.999 2 40 hm5C_associated_SNPs_37638 0 0 1 0 2 CHP1 chr15:41555081 5'GT 41555081 Upstream 78bp
chr9 131455924 131455924 1 + C T STAD 131455929 + 131455909 131455949 41 TCATTTAGGATTTGACGAAACGTTCGAGTCAAACGCAGAAT TCATTTAGGATTTGATGAAACGTTCGAGTCAAACGCAGAAT < 41bp 1 0.126465372315428 1 0.104570269584656 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SET ENSG00000119335 CDS Human protein_coding chr9:131455929 chr9:131455924 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_37640 0 0 1 0 1 SET chr9:131455917 3'AG 131455917 Downstream 8bp
chr16 68104974 68104974 1 + G A STAD 68104973 + 68104953 68104993 41 TCTTCCTCAAGGAGGGTCTGCGGCCCCTGGAGGAGGTCATG TCTTCCTCAAGGAGGGTCTGCAGCCCCTGGAGGAGGTCATG < 41bp 1 0.182004838661348 1 0.250955700874329 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68104973 chr16:68104974 nonsynonymous SNV 0.639 0 22 hm5C_associated_SNPs_37641 0 0 1 0 1 DUS2 chr16:68105011 5'GT 68105011 Upstream 38bp
chr16 68104974 68104974 1 + G A STAD 68104994 + 68104974 68105014 41 GGCCCCTGGAGGAGGTCATGCAGAAATACATCAGATACGTA AGCCCCTGGAGGAGGTCATGCAGAAATACATCAGATACGTA < 41bp 1 0.576590608441207 1 0.420577049255371 experiment 0.846818783117586 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68104994 chr16:68104974 nonsynonymous SNV 0.639 0 1 hm5C_associated_SNPs_37642 0 0 1 0 1 DUS2 chr16:68105011 5'GT 68105011 Upstream 38bp
chr2 32824935 32824935 1 + C T STAD 32824918 + 32824898 32824938 41 TCTTGTGAATCTAGAGACAACTGGTGGTCATAGCGTGCGAT TCTTGTGAATCTAGAGACAACTGGTGGTCATAGCGTGTGAT < 41bp 1 0.204410829917492 1 0.373481869697571 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32824918 chr2:32824935 stopgain 0.990 1 38 hm5C_associated_SNPs_37643 0 0 1 0 1 BIRC6 chr2:32824967 5'GT 32824967 Upstream 33bp
chr2 32824935 32824935 1 + C T STAD 32824931 + 32824911 32824951 41 GAGACAACTGGTGGTCATAGCGTGCGATTCAATCCAAACCT GAGACAACTGGTGGTCATAGCGTGTGATTCAATCCAAACCT < 41bp 1 0.145603027707752 1 0.594649732112885 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32824931 chr2:32824935 stopgain 0.990 1 25 hm5C_associated_SNPs_37644 0 0 1 0 1 BIRC6 chr2:32824967 5'GT 32824967 Upstream 33bp
chr5 73045775 73045775 1 + C T STAD 73045760 + 73045740 73045780 41 GGATCTCATCAGCGACATGTCATGATTGCAGAGCGCATCGA GGATCTCATCAGCGACATGTCATGATTGCAGAGCGTATCGA < 41bp 1 0.671750511761893 1 0.0580762028694153 experiment 0.656498976476214 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF28 ENSG00000214944 CDS Human protein_coding chr5:73045760 chr5:73045775 synonymous SNV . 0 36 hm5C_associated_SNPs_37646 0 0 0 0 1 ARHGEF28 chr5:73045809 5'GT 73045809 Upstream 35bp
chr7 128845210 128845210 1 + C T STAD 128845208 + 128845188 128845228 41 CAGGACATGCACAGCTACATCGCGGCCTTCGGGGCCGTCAC CAGGACATGCACAGCTACATCGTGGCCTTCGGGGCCGTCAC < 41bp 1 0.646762155991257 1 0.465783655643463 experiment 0.706475688017487 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMO ENSG00000128602 CDS Human protein_coding chr7:128845208 chr7:128845210 nonsynonymous SNV 0.980 4 23 hm5C_associated_SNPs_37647 0 0 0 0 1 SMO chr7:128845253 5'GT 128845253 Upstream 44bp
chr1 100480939 100480939 1 + G A STAD 100480954 + 100480934 100480974 41 TCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTC TCAGGAATATAACCGACTGACCTGGATAGTAGTTGTTCTTC < 41bp 1 0.258088655471178 1 0.0523036420345306 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC35A3 ENSG00000117620 CDS Human protein_coding chr1:100480954 chr1:100480939 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_37648 0 0 1 0 2 SLC35A3 chr1:100480858 3'AG 100480858 Downstream 82bp
chr1 100480939 100480939 1 + G A STAD 100480954 + 100480934 100480974 41 TCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTC TCAGGAATATAACCGACTGACCTGGATAGTAGTTGTTCTTC < 41bp 1 0.258088655471178 1 0.0523036420345306 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC35A3 ENSG00000117620 CDS Human protein_coding chr1:100480954 chr1:100480939 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_37648 0 0 1 0 2 SLC35A3 chr1:100480976 5'GT 100480976 Upstream 38bp
chr7 116199067 116199067 1 + G C STAD 116199065 + 116199045 116199085 41 TTTGACGGCATTTGGAAGGCCAGCTTCACCACCTTCACTGT TTTGACGGCATTTGGAAGGCCACCTTCACCACCTTCACTGT < 41bp 1 0.335607878376483 1 0.209854811429977 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAV1 ENSG00000105974 CDS Human protein_coding chr7:116199065 chr7:116199067 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_37651 0 0 0 0 1 CAV1 chr7:116199000 3'AG 116199000 Downstream 68bp
chr16 12618643 12618643 1 + G A STAD 12618659 + 12618639 12618679 41 CCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC CCCCAAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC < 41bp 1 0.151470931822213 1 0.284380257129669 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12618659 chr16:12618643 nonsynonymous SNV 0.819 1 5 hm5C_associated_SNPs_37652 0 0 0 0 2 SNX29 chr16:12618559 3'AG 12618559 Downstream 85bp
chr16 12618643 12618643 1 + G A STAD 12618659 + 12618639 12618679 41 CCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC CCCCAAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC < 41bp 1 0.151470931822213 1 0.284380257129669 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12618659 chr16:12618643 nonsynonymous SNV 0.819 1 5 hm5C_associated_SNPs_37652 0 0 0 0 2 SNX29 chr16:12618698 5'GT 12618698 Upstream 56bp
chr9 131105530 131105530 1 + G A STAD 131105522 + 131105502 131105542 41 TTCCTCTACTTGGGATCTGGCGGCTGGCGCTTCATCCGGGT TTCCTCTACTTGGGATCTGGCGGCTGGCACTTCATCCGGGT < 41bp 1 0.592906753746861 1 0.757473766803741 experiment 0.814186492506279 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC27A4 ENSG00000167114 CDS Human protein_coding chr9:131105522 chr9:131105530 nonsynonymous SNV 0.999 1 29 hm5C_associated_SNPs_37654 0 0 1 0 1 SLC27A4 chr9:131105572 5'GT 131105572 Upstream 43bp
chr11 65403961 65403961 1 + C A STAD 65403941 + 65403921 65403961 41 GGCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCC GGCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCA < 41bp 1 0.0544509815508222 1 0.189748287200928 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403941 chr11:65403961 nonsynonymous SNV 0.581 1 41 hm5C_associated_SNPs_37655 0 0 1 0 1 PCNX3 chr11:65403862 3'AG 65403862 Downstream 100bp
chr11 65403961 65403961 1 + C A STAD 65403942 + 65403922 65403962 41 GCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCCT GCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCAT < 41bp 1 0.0851120541882056 1 0.289888024330139 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403942 chr11:65403961 nonsynonymous SNV 0.581 1 40 hm5C_associated_SNPs_37656 0 0 1 0 1 PCNX3 chr11:65403862 3'AG 65403862 Downstream 100bp
chr11 65403961 65403961 1 + C A STAD 65403943 + 65403923 65403963 41 CTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCCTC CTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCATC < 41bp 1 0.270269616780279 1 0.26461723446846 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403943 chr11:65403961 nonsynonymous SNV 0.581 1 39 hm5C_associated_SNPs_37657 0 0 1 0 1 PCNX3 chr11:65403862 3'AG 65403862 Downstream 100bp
chr20 33764042 33764042 1 + G A STAD 33764041 + 33764021 33764061 41 TCTAGAGCCCATGTCTTCTTCGAAGTGGCTGTGAATGGGAG TCTAGAGCCCATGTCTTCTTCAAAGTGGCTGTGAATGGGAG < 41bp 1 0.64522607796603 1 0.637850701808929 experiment 0.709547844067941 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PROCR ENSG00000101000 CDS Human protein_coding chr20:33764041 chr20:33764042 nonsynonymous SNV 0.977 1 22 hm5C_associated_SNPs_37658 0 0 1 0 1 PROCR chr20:33763971 3'AG 33763971 Downstream 72bp
chr19 13051174 13051174 1 + C T STAD 13051158 + 13051138 13051178 41 GAGTCCGGCTCCTTGGAAGACGATTGGGACTTCCTGCCACC GAGTCCGGCTCCTTGGAAGACGATTGGGACTTCCTGTCACC < 41bp 1 0.311563795276692 1 0.457036256790161 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051158 chr19:13051174 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_37661 0 0 1 0 1 CALR chr19:13051266 5'GT 13051266 Upstream 93bp
chr19 13051174 13051174 1 + C T STAD 13051171 + 13051151 13051191 41 TGGAAGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAG TGGAAGACGATTGGGACTTCCTGTCACCCAAGAAGATAAAG < 41bp 1 0.179932891306239 1 0.0987732112407684 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051171 chr19:13051174 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_37662 0 0 1 0 1 CALR chr19:13051266 5'GT 13051266 Upstream 93bp
chr19 13051174 13051174 1 + C T STAD 13051175 + 13051155 13051195 41 AGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAGGATC AGACGATTGGGACTTCCTGTCACCCAAGAAGATAAAGGATC < 41bp 1 0.427609259106802 1 0.0877532362937927 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051175 chr19:13051174 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_37663 0 0 1 0 1 CALR chr19:13051266 5'GT 13051266 Upstream 93bp
chr18 55996250 55996250 1 + A T STAD 55996248 + 55996228 55996268 41 GACGTGTCCTCGGAGTCGGACAATAACATCAGACAGATCAA GACGTGTCCTCGGAGTCGGACATTAACATCAGACAGATCAA < 41bp 1 0.149082460262604 1 0.0777093768119812 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NEDD4L ENSG00000049759 CDS Human protein_coding chr18:55996248 chr18:55996250 nonsynonymous SNV 0.932 2 23 hm5C_associated_SNPs_37664 0 0 1 0 1 NEDD4L chr18:55996227 3'AG 55996227 Downstream 24bp
chr6 32123549 32123549 1 + G A STAD 32123537 + 32123517 32123557 41 TTCTTTCATCTCCCTCTCCTCTCCACAGATGGGACAGTATG TTCTTTCATCTCCCTCTCCTCTCCACAGATGGAACAGTATG < 41bp 1 0.649250969325992 1 0.95546692609787 experiment 0.701498061348016 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control PPT2 ENSG00000221988;ENSG00000258388 CDS Human other chr6:32123537 chr6:32123549 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_37666 0 0 1 1 2 PPT2 chr6:32123465 3'AG 32123465 Downstream 85bp
chr6 32123549 32123549 1 + G A STAD 32123537 + 32123517 32123557 41 TTCTTTCATCTCCCTCTCCTCTCCACAGATGGGACAGTATG TTCTTTCATCTCCCTCTCCTCTCCACAGATGGAACAGTATG < 41bp 1 0.649250969325992 1 0.95546692609787 experiment 0.701498061348016 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control PPT2 ENSG00000221988;ENSG00000258388 CDS Human other chr6:32123537 chr6:32123549 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_37666 0 0 1 1 2 PPT2 chr6:32123560 5'GT 32123560 Upstream 12bp
chr5 52204835 52204835 1 + G T STAD 52204817 + 52204797 52204837 41 CTAGTCGGAGCCCCTATGTACATGGGAACAGAGAAGGAGGA CTAGTCGGAGCCCCTATGTACATGGGAACAGAGAAGGATGA < 41bp 1 0.363072350902905 1 0.328538596630096 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ITGA1 ENSG00000213949 CDS Human protein_coding chr5:52204817 chr5:52204835 nonsynonymous SNV 0.990 1 39 hm5C_associated_SNPs_37668 0 0 1 0 1 ITGA1 chr5:52204871 5'GT 52204871 Upstream 37bp
chr17 54912541 54912541 1 + C T STAD 54912549 + 54912529 54912569 41 CACCACTGGATCCGGGGCAACGTGCCCCTGTGCAGTTACTG CACCACTGGATCTGGGGCAACGTGCCCCTGTGCAGTTACTG < 41bp 1 0.311226883832393 1 0.176509767770767 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKE ENSG00000153933 CDS Human protein_coding chr17:54912549 chr17:54912541 nonsynonymous SNV 0.990 5 13 hm5C_associated_SNPs_37669 0 0 1 0 1 DGKE chr17:54912620 5'GT 54912620 Upstream 80bp
chr19 49619588 49619588 1 + G A STAD 49619603 + 49619583 49619623 41 AAGACGGATGAGGGCCTAGGCTTCAACATCATGGGTGGCAA AAGACAGATGAGGGCCTAGGCTTCAACATCATGGGTGGCAA < 41bp 1 0.683297512575618 1 0.706752121448517 experiment 0.633404974848764 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LIN7B ENSG00000104863 CDS Human protein_coding chr19:49619603 chr19:49619588 synonymous SNV . 0 6 hm5C_associated_SNPs_37670 0 0 0 0 1 LIN7B chr19:49619520 3'AG 49619520 Downstream 69bp
chr6 168314926 168314926 1 + C T STAD 168314938 + 168314918 168314958 41 AGCAAGACCGAGACCTTAGTCGGATCACACTGGATGCTCAA AGCAAGACTGAGACCTTAGTCGGATCACACTGGATGCTCAA < 41bp 1 0.374784937491144 1 0.872965693473816 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168314938 chr6:168314926 stopgain 1.000 1 9 hm5C_associated_SNPs_37671 0 0 1 0 2 AFDN chr6:168314848 3'AG 168314848 Downstream 79bp
chr6 168314926 168314926 1 + C T STAD 168314938 + 168314918 168314958 41 AGCAAGACCGAGACCTTAGTCGGATCACACTGGATGCTCAA AGCAAGACTGAGACCTTAGTCGGATCACACTGGATGCTCAA < 41bp 1 0.374784937491144 1 0.872965693473816 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168314938 chr6:168314926 stopgain 1.000 1 9 hm5C_associated_SNPs_37671 0 0 1 0 2 AFDN chr6:168314993 5'GT 168314993 Upstream 68bp
chr8 133856424 133856424 1 + A G STAD 133856405 + 133856385 133856425 41 TGGTCCTTTGGAGAAGAATCCAGCTGAAGGGAATACAGTAT TGGTCCTTTGGAGAAGAATCCAGCTGAAGGGAATACAGTGT < 41bp 1 0.349928520490105 1 0.28902330994606 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133856405 chr8:133856424 synonymous SNV . 0 40 hm5C_associated_SNPs_37672 0 0 0 0 1 PHF20L1 chr8:133856401 3'AG 133856401 Downstream 24bp
chr12 107237697 107237697 1 + G A STAD 107237701 + 107237681 107237721 41 TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTCAAAGA TGTTCCCGAGCCCATCAAAACATCCGAAAATTTCTCAAAGA < 41bp 1 0.188073396050033 1 0.28300803899765 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107237701 chr12:107237697 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_37673 0 0 0 0 2 RIC8B chr12:107237630 3'AG 107237630 Downstream 68bp
chr12 107237697 107237697 1 + G A STAD 107237701 + 107237681 107237721 41 TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTCAAAGA TGTTCCCGAGCCCATCAAAACATCCGAAAATTTCTCAAAGA < 41bp 1 0.188073396050033 1 0.28300803899765 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107237701 chr12:107237697 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_37673 0 0 0 0 2 RIC8B chr12:107237725 5'GT 107237725 Upstream 29bp
chr12 109604785 109604785 1 + G A STAD 109604784 + 109604764 109604804 41 TCACACGCTTTGGGGGGGATCGGGTCATCGAGAAGGTACAG TCACACGCTTTGGGGGGGATCAGGTCATCGAGAAGGTACAG < 41bp 1 0.488681972221899 1 0.61039537191391 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109604784 chr12:109604785 nonsynonymous SNV 0.965 0 22 hm5C_associated_SNPs_37675 0 0 1 0 1 ACACB chr12:109604798 5'GT 109604798 Upstream 14bp
chr10 127452032 127452032 1 + C T STAD 127452023 + 127452003 127452043 41 GCCGCCGGCAGTGCAGCGAGCAGCAATGCCGTTCAGTGACT GCCGCCGGCAGTGCAGCGAGCAGCAATGCTGTTCAGTGACT < 41bp 1 0.771744618354115 1 0.235127598047256 experiment 0.456510763291769 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EDRF1 ENSG00000107938 CDS Human protein_coding chr10:127452023 chr10:127452032 synonymous SNV . 0 30 hm5C_associated_SNPs_37677 0 0 1 0 1 EDRF1 chr10:127452093 5'GT 127452093 Upstream 62bp
chr8 22064992 22064992 1 + G A STAD 22065011 + 22064991 22065031 41 CGGTCCAGCGAAAGGGCTTCCAGGCCTCCCACGCCACAGGT CAGTCCAGCGAAAGGGCTTCCAGGCCTCCCACGCCACAGGT < 41bp 1 0.52717954035143 1 0.802735567092896 experiment 0.94564091929714 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22065011 chr8:22064992 synonymous SNV . 0 2 hm5C_associated_SNPs_37678 0 0 0 0 1 BMP1 chr8:22065029 5'GT 22065029 Upstream 38bp
chr15 42052726 42052726 1 + G A STAD 42052715 + 42052695 42052735 41 TCCAAGGTTTCCAAAAGTCTCATTCTTACTCGAGTAAGTGT TCCAAGGTTTCCAAAAGTCTCATTCTTACTCAAGTAAGTGT < 41bp 1 0.0214967670715626 1 0.0461910665035248 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGA ENSG00000174197 CDS Human protein_coding chr15:42052715 chr15:42052726 nonsynonymous SNV 0.996 1 32 hm5C_associated_SNPs_37679 0 0 1 0 1 MGA chr15:42052727 5'GT 42052727 Upstream 2bp
chr15 41859622 41859622 1 + G A STAD 41859602 + 41859582 41859622 41 GAAGTCCTGGCTGTTGTGGTCCCTGTGCCCCCCTTTACCTG GAAGTCCTGGCTGTTGTGGTCCCTGTGCCCCCCTTTACCTA < 41bp 1 0.250383644518798 1 0.0302310883998871 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41859602 chr15:41859622 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_37680 0 0 1 0 1 TYRO3 chr15:41859558 3'AG 41859558 Downstream 65bp
chr17 18061119 18061119 1 + C T STAD 18061139 + 18061119 18061159 41 CAGCTGCCAACGGAGCCAGGCCGCGGCCGAGCAGCCGCCGT TAGCTGCCAACGGAGCCAGGCCGCGGCCGAGCAGCCGCCGT < 41bp 1 0.219305561280174 1 0.179861426353455 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MYO15A ENSG00000091536 CDS Human protein_coding chr17:18061139 chr17:18061119 stopgain 0.436 0 1 hm5C_associated_SNPs_37683 0 0 0 0 1 MYO15A chr17:18061214 5'GT 18061214 Upstream 96bp
chr22 32275660 32275660 1 + C T STAD 32275664 + 32275644 32275684 41 GCCCTGGCTGCCTAGCCGGCCAGCCTCCTATGCAAGTAGGC GCCCTGGCTGCCTAGCTGGCCAGCCTCCTATGCAAGTAGGC < 41bp 1 0.306277543254424 1 0.0641768276691437 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32275664 chr22:32275660 nonsynonymous SNV 0.980 3 17 hm5C_associated_SNPs_37689 0 0 0 2 1 DEPDC5 chr22:32275738 5'GT 32275738 Upstream 79bp
chr11 128680442 128680442 1 + C T STAD 128680424 + 128680404 128680444 41 AGCGCCAACGCCAGCTGTATCACCTGGGAGGGGACCAACGG AGCGCCAACGCCAGCTGTATCACCTGGGAGGGGACCAATGG < 41bp 1 0.731807387174501 1 0.574669182300568 experiment 0.536385225650998 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FLI1 ENSG00000151702 CDS Human protein_coding chr11:128680424 chr11:128680442 synonymous SNV . 0 39 hm5C_associated_SNPs_37691 0 0 0 0 1 FLI1 chr11:128680354 3'AG 128680354 Downstream 89bp
chr19 10940880 10940880 1 + G T STAD 10940869 + 10940849 10940889 41 CGGCCCCCAGCAGTGAGGGGCCCCACTCCAGGGCCCCCCCT CGGCCCCCAGCAGTGAGGGGCCCCACTCCAGTGCCCCCCCT < 41bp 1 0.250178193316559 1 0.143673956394196 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940869 chr19:10940880 nonsynonymous SNV 0.916 5 32 hm5C_associated_SNPs_37692 0 0 1 0 1 DNM2 chr19:10940803 3'AG 10940803 Downstream 78bp
chr19 10940880 10940880 1 + G T STAD 10940870 + 10940850 10940890 41 GGCCCCCAGCAGTGAGGGGCCCCACTCCAGGGCCCCCCCTG GGCCCCCAGCAGTGAGGGGCCCCACTCCAGTGCCCCCCCTG < 41bp 1 0.156410406726121 1 0.0557902455329895 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940870 chr19:10940880 nonsynonymous SNV 0.916 5 31 hm5C_associated_SNPs_37693 0 0 1 0 1 DNM2 chr19:10940803 3'AG 10940803 Downstream 78bp
chr19 10940880 10940880 1 + G T STAD 10940871 + 10940851 10940891 41 GCCCCCAGCAGTGAGGGGCCCCACTCCAGGGCCCCCCCTGA GCCCCCAGCAGTGAGGGGCCCCACTCCAGTGCCCCCCCTGA < 41bp 1 0.114164658920515 1 0.108185350894928 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940871 chr19:10940880 nonsynonymous SNV 0.916 5 30 hm5C_associated_SNPs_37694 0 0 1 0 1 DNM2 chr19:10940803 3'AG 10940803 Downstream 78bp
chr19 10940880 10940880 1 + G T STAD 10940900 + 10940880 10940920 41 GGCCCCCCCTGATTCCTGTTCCCGTGGGGGCAGCAGCCTCC TGCCCCCCCTGATTCCTGTTCCCGTGGGGGCAGCAGCCTCC < 41bp 1 0.362905347717881 1 0.147898763418198 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940900 chr19:10940880 nonsynonymous SNV 0.916 5 1 hm5C_associated_SNPs_37695 0 0 1 0 1 DNM2 chr19:10940803 3'AG 10940803 Downstream 78bp
chr11 71502820 71502820 1 + G A STAD 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCACCCGCCATCAGTCAAGTAT < 41bp 1 0.18220388530492 1 0.4211286008358 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502820 synonymous SNV . 0 29 hm5C_associated_SNPs_37696 0 0 0 0 3 FAM86C1 chr11:71502782 3'AG 71502782 Downstream 39bp
chr11 71502820 71502820 1 + G A STAD 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCACCCGCCATCAGTCAAGTAT < 41bp 1 0.18220388530492 1 0.4211286008358 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502820 synonymous SNV . 0 29 hm5C_associated_SNPs_37696 0 0 0 0 3 FAM86C1 chr11:71502785 3'AG 71502785 Downstream 36bp
chr11 71502820 71502820 1 + G A STAD 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCACCCGCCATCAGTCAAGTAT < 41bp 1 0.18220388530492 1 0.4211286008358 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502820 synonymous SNV . 0 29 hm5C_associated_SNPs_37696 0 0 0 0 3 FAM86C1 chr11:71502865 5'GT 71502865 Upstream 46bp
chr7 44099178 44099178 1 + C T STAD 44099175 + 44099155 44099195 41 GGAGCCGGCGCCCAGCACTCCTCCATGTCTGGTGCAGGCAG GGAGCCGGCGCCCAGCACTCCTCTATGTCTGGTGCAGGCAG < 41bp 1 0.569515130944004 1 0.938760638237 experiment 0.860969738111992 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DBNL ENSG00000136279 CDS Human protein_coding chr7:44099175 chr7:44099178 nonsynonymous SNV 0.021 0 24 hm5C_associated_SNPs_37697 0 0 1 0 2 DBNL chr7:44099142 3'AG 44099142 Downstream 37bp
chr7 44099178 44099178 1 + C T STAD 44099175 + 44099155 44099195 41 GGAGCCGGCGCCCAGCACTCCTCCATGTCTGGTGCAGGCAG GGAGCCGGCGCCCAGCACTCCTCTATGTCTGGTGCAGGCAG < 41bp 1 0.569515130944004 1 0.938760638237 experiment 0.860969738111992 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DBNL ENSG00000136279 CDS Human protein_coding chr7:44099175 chr7:44099178 nonsynonymous SNV 0.021 0 24 hm5C_associated_SNPs_37697 0 0 1 0 2 DBNL chr7:44099257 5'GT 44099257 Upstream 80bp
chr20 23350290 23350290 1 + G A STAD 23350279 + 23350259 23350299 41 TTCACCCAGCTCAACGCCCTCCAGCGCCACCGCCGCATCCA TTCACCCAGCTCAACGCCCTCCAGCGCCACCACCGCATCCA < 41bp 1 0.464088403845238 1 0.50152325630188 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350279 chr20:23350290 nonsynonymous SNV 0.979 0 32 hm5C_associated_SNPs_37698 0 0 0 0 2 GZF1 chr20:23350221 3'AG 23350221 Downstream 70bp
chr20 23350290 23350290 1 + G A STAD 23350279 + 23350259 23350299 41 TTCACCCAGCTCAACGCCCTCCAGCGCCACCGCCGCATCCA TTCACCCAGCTCAACGCCCTCCAGCGCCACCACCGCATCCA < 41bp 1 0.464088403845238 1 0.50152325630188 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350279 chr20:23350290 nonsynonymous SNV 0.979 0 32 hm5C_associated_SNPs_37698 0 0 0 0 2 GZF1 chr20:23350378 5'GT 23350378 Upstream 89bp
chr20 62373333 62373333 1 + C T STAD 62373328 + 62373308 62373348 41 GACCTGGCCAGTGACCAGTCCTCTCCGTCCACCCCGTCACC GACCTGGCCAGTGACCAGTCCTCTCTGTCCACCCCGTCACC < 41bp 1 0.105908762937232 1 0.0575765073299408 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62373328 chr20:62373333 nonsynonymous SNV 0.719 2 26 hm5C_associated_SNPs_37699 0 0 1 0 1 SLC2A4RG chr20:62373409 5'GT 62373409 Upstream 77bp
chr11 400009 400009 1 + G A STAD 399996 + 399976 400016 41 GGAACCTTTCATCCAGCGACCACCTGAAGGACCGCCTGGCC GGAACCTTTCATCCAGCGACCACCTGAAGGACCACCTGGCC < 41bp 1 0.278776651695235 1 0.24642476439476 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PKP3 ENSG00000184363 CDS Human protein_coding chr11:399996 chr11:400009 nonsynonymous SNV 0.995 1 34 hm5C_associated_SNPs_37700 0 0 1 0 1 PKP3 chr11:399967 3'AG 399967 Downstream 43bp
chr1 46743801 46743801 1 + T C STAD 46743784 + 46743764 46743804 41 TCAACAGCCGTCAGATCCGGCCACCCCCTGATGGTTCTGAC TCAACAGCCGTCAGATCCGGCCACCCCCTGATGGTTCCGAC < 41bp 1 0.0715305530825029 1 0.22381055355072 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAD54L ENSG00000085999 CDS Human protein_coding chr1:46743784 chr1:46743801 synonymous SNV . 0 38 hm5C_associated_SNPs_37701 0 0 1 0 1 RAD54L chr1:46743744 3'AG 46743744 Downstream 58bp
chr4 123748453 123748453 1 + C T STAD 123748458 + 123748438 123748478 41 GGGGGCTTCTTCCTGCGCATCCACCCCGACGGCCGAGTTGA GGGGGCTTCTTCCTGTGCATCCACCCCGACGGCCGAGTTGA < 41bp 1 0.153939607566275 1 0.0626850128173828 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGF2 ENSG00000138685 CDS Human protein_coding chr4:123748458 chr4:123748453 nonsynonymous SNV 0.997 4 16 hm5C_associated_SNPs_37702 0 0 1 0 1 FGF2 chr4:123748507 5'GT 123748507 Upstream 55bp
chr4 123748453 123748453 1 + C T STAD 123748462 + 123748442 123748482 41 GCTTCTTCCTGCGCATCCACCCCGACGGCCGAGTTGACGGG GCTTCTTCCTGTGCATCCACCCCGACGGCCGAGTTGACGGG < 41bp 1 0.70053155698606 1 0.105326235294342 experiment 0.598936886027881 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGF2 ENSG00000138685 CDS Human protein_coding chr4:123748462 chr4:123748453 nonsynonymous SNV 0.997 4 12 hm5C_associated_SNPs_37703 0 0 1 0 1 FGF2 chr4:123748507 5'GT 123748507 Upstream 55bp
chr16 2811591 2811591 1 + G A STAD 2811603 + 2811583 2811623 41 CCCTCTCCGGAAAGGAGCAGCACAGGCCCAGAACCACCTGC CCCTCTCCAGAAAGGAGCAGCACAGGCCCAGAACCACCTGC < 41bp 1 0.343422687479642 1 0.518993735313416 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2811603 chr16:2811591 synonymous SNV . 0 9 hm5C_associated_SNPs_37704 0 0 1 0 1 SRRM2 chr16:2811562 3'AG 2811562 Downstream 30bp
chr11 82878523 82878523 1 + C T STAD 82878517 + 82878497 82878537 41 ACTTCCTTGTTGTTGTGCATCAAATTCGACAGCTATTTCAG ACTTCCTTGTTGTTGTGCATCAAATTTGACAGCTATTTCAG < 41bp 1 0.394183062841016 1 0.448924571275711 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCF11 ENSG00000165494 CDS Human protein_coding chr11:82878517 chr11:82878523 stopgain 1.000 1 27 hm5C_associated_SNPs_37705 0 0 1 0 2 PCF11 chr11:82878457 3'AG 82878457 Downstream 67bp
chr11 82878523 82878523 1 + C T STAD 82878517 + 82878497 82878537 41 ACTTCCTTGTTGTTGTGCATCAAATTCGACAGCTATTTCAG ACTTCCTTGTTGTTGTGCATCAAATTTGACAGCTATTTCAG < 41bp 1 0.394183062841016 1 0.448924571275711 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCF11 ENSG00000165494 CDS Human protein_coding chr11:82878517 chr11:82878523 stopgain 1.000 1 27 hm5C_associated_SNPs_37705 0 0 1 0 2 PCF11 chr11:82878547 5'GT 82878547 Upstream 25bp
chr9 129458222 129458222 1 + G A STAD 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGCCCCTACGGCAGCAGCAACCCCTTCCAGCAGGG < 41bp 1 0.683209999452642 1 0.433235287666321 experiment 0.633580001094715 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458222 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_37706 0 0 0 0 2 LMX1B chr9:129458261 5'GT 129458261 Upstream 40bp
chr9 129458222 129458222 1 + G A STAD 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGCCCCTACGGCAGCAGCAACCCCTTCCAGCAGGG < 41bp 1 0.683209999452642 1 0.433235287666321 experiment 0.633580001094715 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458222 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_37706 0 0 0 0 2 LMX1B chr9:129458282 5'GT 129458282 Upstream 61bp
chr20 47582548 47582548 1 + A G STAD 47582558 + 47582538 47582578 41 CCTTGTCGTCAGCAGATAATCTGGTATGTTGGTGATCATCC CCTTGTCGTCGGCAGATAATCTGGTATGTTGGTGATCATCC < 41bp 1 0.71175028110898 1 0.107475519180298 experiment 0.576499437782039 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47582558 chr20:47582548 synonymous SNV . 0 11 hm5C_associated_SNPs_37707 0 0 1 0 1 ARFGEF2 chr20:47582560 5'GT 47582560 Upstream 13bp
chr22 20079078 20079078 1 + C T STAD 20079093 + 20079073 20079113 41 GCAGGCGGAGTCCGAGAGGCCCATCTTGCCAGCCAATCAGA GCAGGTGGAGTCCGAGAGGCCCATCTTGCCAGCCAATCAGA < 41bp 1 0.0654864034565069 1 0.130122065544128 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGCR8 ENSG00000128191 CDS Human protein_coding chr22:20079093 chr22:20079078 nonsynonymous SNV 0.946 3 6 hm5C_associated_SNPs_37708 0 0 1 0 1 DGCR8 chr22:20079155 5'GT 20079155 Upstream 78bp
chr3 53880617 53880617 1 + T C STAD 53880614 + 53880594 53880634 41 GATCCCGCGCAGTGGCCCGGCGATGTCGCTCGTGCTGCTAA GATCCCGCGCAGTGGCCCGGCGACGTCGCTCGTGCTGCTAA < 41bp 1 0.733023219872201 1 0.472520589828491 experiment 0.533953560255598 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IL17RB ENSG00000056736 CDS Human protein_coding chr3:53880614 chr3:53880617 nonsynonymous SNV 0.033 1 24 hm5C_associated_SNPs_37713 0 0 1 0 1 IL17RB chr3:53880675 5'GT 53880675 Upstream 59bp
chr11 125475553 125475553 1 + T C STAD 125475549 + 125475529 125475569 41 GCCATCTTTTGCATGCTACTCACCTACTACATGTGGATCAA GCCATCTTTTGCATGCTACTCACCCACTACATGTGGATCAA < 41bp 1 0.523027641322682 1 0.285672307014465 experiment 0.953944717354635 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STT3A ENSG00000134910 CDS Human protein_coding chr11:125475549 chr11:125475553 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_37714 0 0 1 0 2 STT3A chr11:125475524 3'AG 125475524 Downstream 30bp
chr11 125475553 125475553 1 + T C STAD 125475549 + 125475529 125475569 41 GCCATCTTTTGCATGCTACTCACCTACTACATGTGGATCAA GCCATCTTTTGCATGCTACTCACCCACTACATGTGGATCAA < 41bp 1 0.523027641322682 1 0.285672307014465 experiment 0.953944717354635 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STT3A ENSG00000134910 CDS Human protein_coding chr11:125475549 chr11:125475553 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_37714 0 0 1 0 2 STT3A chr11:125475630 5'GT 125475630 Upstream 78bp
chr13 42773797 42773797 1 + A G STAD 42773796 + 42773776 42773816 41 TTAATAATAAAAGAGAGGAGCACCCTGAAAAATGCAGGTAA TTAATAATAAAAGAGAGGAGCGCCCTGAAAAATGCAGGTAA < 41bp 1 0.125962278669713 1 0.272104829549789 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKH ENSG00000102780 CDS Human protein_coding chr13:42773796 chr13:42773797 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_37716 0 0 0 0 2 DGKH chr13:42773702 3'AG 42773702 Downstream 96bp
chr13 42773797 42773797 1 + A G STAD 42773796 + 42773776 42773816 41 TTAATAATAAAAGAGAGGAGCACCCTGAAAAATGCAGGTAA TTAATAATAAAAGAGAGGAGCGCCCTGAAAAATGCAGGTAA < 41bp 1 0.125962278669713 1 0.272104829549789 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKH ENSG00000102780 CDS Human protein_coding chr13:42773796 chr13:42773797 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_37716 0 0 0 0 2 DGKH chr13:42773812 5'GT 42773812 Upstream 16bp
chr13 42773797 42773797 1 + A G STAD 42773800 + 42773780 42773820 41 TAATAAAAGAGAGGAGCACCCTGAAAAATGCAGGTAATTTT TAATAAAAGAGAGGAGCGCCCTGAAAAATGCAGGTAATTTT < 41bp 1 0.363114467673253 1 0.425588697195053 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKH ENSG00000102780 CDS Human protein_coding chr13:42773800 chr13:42773797 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_37717 0 0 0 0 2 DGKH chr13:42773702 3'AG 42773702 Downstream 96bp
chr13 42773797 42773797 1 + A G STAD 42773800 + 42773780 42773820 41 TAATAAAAGAGAGGAGCACCCTGAAAAATGCAGGTAATTTT TAATAAAAGAGAGGAGCGCCCTGAAAAATGCAGGTAATTTT < 41bp 1 0.363114467673253 1 0.425588697195053 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKH ENSG00000102780 CDS Human protein_coding chr13:42773800 chr13:42773797 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_37717 0 0 0 0 2 DGKH chr13:42773812 5'GT 42773812 Upstream 16bp
chr14 102455091 102455091 1 + C T STAD 102455097 + 102455077 102455117 41 TGAGAGCTTGGACGCAGGTTCTTCTTGGACAAGCTGAAGAT TGAGAGCTTGGACGTAGGTTCTTCTTGGACAAGCTGAAGAT < 41bp 1 0.0675295445606351 1 0.0880788564682007 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102455097 chr14:102455091 stopgain 0.992 1 15 hm5C_associated_SNPs_37718 0 0 1 0 2 DYNC1H1 chr14:102455040 3'AG 102455040 Downstream 52bp
chr14 102455091 102455091 1 + C T STAD 102455097 + 102455077 102455117 41 TGAGAGCTTGGACGCAGGTTCTTCTTGGACAAGCTGAAGAT TGAGAGCTTGGACGTAGGTTCTTCTTGGACAAGCTGAAGAT < 41bp 1 0.0675295445606351 1 0.0880788564682007 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102455097 chr14:102455091 stopgain 0.992 1 15 hm5C_associated_SNPs_37718 0 0 1 0 2 DYNC1H1 chr14:102455189 5'GT 102455189 Upstream 99bp
chr6 31928236 31928236 1 + G A STAD 31928230 + 31928210 31928250 41 TCTTGCTGGAGAACACAAATCTCTCGGCTACAACCTCCTTG TCTTGCTGGAGAACACAAATCTCTCGACTACAACCTCCTTG < 41bp 1 0.352216817324878 1 0.140598982572556 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31928230 chr6:31928236 nonsynonymous SNV 0.766 4 27 hm5C_associated_SNPs_37723 0 0 0 0 2 SKIV2L chr6:31928209 3'AG 31928209 Downstream 28bp
chr6 31928236 31928236 1 + G A STAD 31928230 + 31928210 31928250 41 TCTTGCTGGAGAACACAAATCTCTCGGCTACAACCTCCTTG TCTTGCTGGAGAACACAAATCTCTCGACTACAACCTCCTTG < 41bp 1 0.352216817324878 1 0.140598982572556 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31928230 chr6:31928236 nonsynonymous SNV 0.766 4 27 hm5C_associated_SNPs_37723 0 0 0 0 2 SKIV2L chr6:31928323 5'GT 31928323 Upstream 88bp
chr16 2569560 2569560 1 + C T STAD 2569545 + 2569525 2569565 41 TCTCTTCTCGCCCCCAGGAGCTTCCTCCAGCTGGGCGCCGG TCTCTTCTCGCCCCCAGGAGCTTCCTCCAGCTGGGTGCCGG < 41bp 1 0.207923420113398 1 0.0287701487541199 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V0C ENSG00000185883 CDS Human protein_coding chr16:2569545 chr16:2569560 synonymous SNV . 0 36 hm5C_associated_SNPs_37724 0 0 1 0 1 ATP6V0C chr16:2569542 3'AG 2569542 Downstream 19bp
chr16 2569560 2569560 1 + C T STAD 2569563 + 2569543 2569583 41 AGCTTCCTCCAGCTGGGCGCCGGCCTGAGCGTGGGCCTGAG AGCTTCCTCCAGCTGGGTGCCGGCCTGAGCGTGGGCCTGAG < 41bp 1 0.537915565255572 1 0.812544107437134 experiment 0.924168869488855 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V0C ENSG00000185883 CDS Human protein_coding chr16:2569563 chr16:2569560 synonymous SNV . 0 18 hm5C_associated_SNPs_37725 0 0 1 0 1 ATP6V0C chr16:2569542 3'AG 2569542 Downstream 19bp
chr1 33957297 33957297 1 + G A STAD 33957277 + 33957257 33957297 41 GGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCG GGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCA < 41bp 1 0.220910170562772 1 0.0734855234622955 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957277 chr1:33957297 nonsynonymous SNV 0.997 3 41 hm5C_associated_SNPs_37726 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 6bp
chr1 33957297 33957297 1 + G A STAD 33957278 + 33957258 33957298 41 GGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGT GGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCAT < 41bp 1 0.112322703780141 1 0.117185115814209 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957278 chr1:33957297 nonsynonymous SNV 0.997 3 40 hm5C_associated_SNPs_37727 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 6bp
chr1 33957297 33957297 1 + G A STAD 33957279 + 33957259 33957299 41 GCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGTA GCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCATA < 41bp 1 0.393214764271572 1 0.125858813524246 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957279 chr1:33957297 nonsynonymous SNV 0.997 3 39 hm5C_associated_SNPs_37728 0 0 0 0 1 ZSCAN20 chr1:33957302 5'GT 33957302 Upstream 6bp
chr1 24782721 24782721 1 + T C STAD 24782707 + 24782687 24782727 41 GGGAACCTGCAGCTTGACTACCCCATCTTCTACGTGATGTT GGGAACCTGCAGCTTGACTACCCCATCTTCTACGCGATGTT < 41bp 1 0.446974364451182 1 0.152356207370758 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NIPAL3 ENSG00000001461 CDS Human protein_coding chr1:24782707 chr1:24782721 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_37730 0 0 1 0 1 NIPAL3 chr1:24782763 5'GT 24782763 Upstream 43bp
chr20 23350276 23350276 1 + C A STAD 23350279 + 23350259 23350299 41 TTCACCCAGCTCAACGCCCTCCAGCGCCACCGCCGCATCCA TTCACCCAGCTCAACGCACTCCAGCGCCACCGCCGCATCCA < 41bp 1 0.573324415967801 1 0.448978245258331 experiment 0.853351168064397 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350279 chr20:23350276 synonymous SNV . 0 18 hm5C_associated_SNPs_37732 0 0 0 0 1 GZF1 chr20:23350221 3'AG 23350221 Downstream 56bp
chr20 60881312 60881312 1 + C T STAD 60881329 + 60881309 60881349 41 CAACCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCA CAATCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCA < 41bp 1 0.243465740766514 1 0.443653911352158 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60881329 chr20:60881312 synonymous SNV . 0 4 hm5C_associated_SNPs_37733 0 0 1 0 2 ADRM1 chr20:60881253 3'AG 60881253 Downstream 60bp
chr20 60881312 60881312 1 + C T STAD 60881329 + 60881309 60881349 41 CAACCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCA CAATCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCA < 41bp 1 0.243465740766514 1 0.443653911352158 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60881329 chr20:60881312 synonymous SNV . 0 4 hm5C_associated_SNPs_37733 0 0 1 0 2 ADRM1 chr20:60881376 5'GT 60881376 Upstream 65bp
chr15 72057442 72057442 1 + C T STAD 72057443 + 72057423 72057463 41 ACACCTTTGAAGTGTTGGACCCCTCTGAATGTTCTTTCCTG ACACCTTTGAAGTGTTGGATCCCTCTGAATGTTCTTTCCTG < 41bp 1 0.0359938509489158 1 0.0171889960765839 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control THSD4 ENSG00000187720 CDS Human protein_coding chr15:72057443 chr15:72057442 synonymous SNV . 0 20 hm5C_associated_SNPs_37734 0 0 0 0 1 THSD4 chr15:72057538 5'GT 72057538 Upstream 97bp
chr10 5955763 5955763 1 + A G STAD 5955758 + 5955738 5955778 41 TATCTTCAGGAGAATTCCTGCACTCAGGCCACAAAAGTTAA TATCTTCAGGAGAATTCCTGCACTCGGGCCACAAAAGTTAA < 41bp 1 0.08309370791557 1 0.0819756686687469 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5955758 chr10:5955763 nonsynonymous SNV 0.979 0 26 hm5C_associated_SNPs_37735 0 0 1 0 1 FBXO18 chr10:5955710 3'AG 5955710 Downstream 54bp
chr17 37358654 37358654 1 + A G STAD 37358657 + 37358637 37358677 41 GGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCA GGCTCGATGCCGGAAAAGCACCTTGGCCCGCCGGAAGGGCA < 41bp 1 0.159166463642605 1 0.0478030145168304 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358657 chr17:37358654 nonsynonymous SNV 0.999 0 18 hm5C_associated_SNPs_37736 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 85bp
chr17 37358654 37358654 1 + A G STAD 37358657 + 37358637 37358677 41 GGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCA GGCTCGATGCCGGAAAAGCACCTTGGCCCGCCGGAAGGGCA < 41bp 1 0.159166463642605 1 0.0478030145168304 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358657 chr17:37358654 nonsynonymous SNV 0.999 0 18 hm5C_associated_SNPs_37736 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 39bp
chr17 37358654 37358654 1 + A G STAD 37358663 + 37358643 37358683 41 ATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACA ATGCCGGAAAAGCACCTTGGCCCGCCGGAAGGGCAGGCACA < 41bp 1 0.273265420139609 1 0.0666538774967194 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358663 chr17:37358654 nonsynonymous SNV 0.999 0 12 hm5C_associated_SNPs_37737 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 85bp
chr17 37358654 37358654 1 + A G STAD 37358663 + 37358643 37358683 41 ATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACA ATGCCGGAAAAGCACCTTGGCCCGCCGGAAGGGCAGGCACA < 41bp 1 0.273265420139609 1 0.0666538774967194 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358663 chr17:37358654 nonsynonymous SNV 0.999 0 12 hm5C_associated_SNPs_37737 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 39bp
chr17 37358654 37358654 1 + A G STAD 37358664 + 37358644 37358684 41 TGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACAT TGCCGGAAAAGCACCTTGGCCCGCCGGAAGGGCAGGCACAT < 41bp 1 0.26508128354448 1 0.102415055036545 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358664 chr17:37358654 nonsynonymous SNV 0.999 0 11 hm5C_associated_SNPs_37738 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 85bp
chr17 37358654 37358654 1 + A G STAD 37358664 + 37358644 37358684 41 TGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACAT TGCCGGAAAAGCACCTTGGCCCGCCGGAAGGGCAGGCACAT < 41bp 1 0.26508128354448 1 0.102415055036545 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358664 chr17:37358654 nonsynonymous SNV 0.999 0 11 hm5C_associated_SNPs_37738 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 39bp
chr17 37358654 37358654 1 + A G STAD 37358668 + 37358648 37358688 41 GGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATGGGC GGAAAAGCACCTTGGCCCGCCGGAAGGGCAGGCACATGGGC < 41bp 1 0.798016172174365 1 0.764598429203033 experiment 0.403967655651269 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358668 chr17:37358654 nonsynonymous SNV 0.999 0 7 hm5C_associated_SNPs_37739 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 85bp
chr17 37358654 37358654 1 + A G STAD 37358668 + 37358648 37358688 41 GGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATGGGC GGAAAAGCACCTTGGCCCGCCGGAAGGGCAGGCACATGGGC < 41bp 1 0.798016172174365 1 0.764598429203033 experiment 0.403967655651269 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358668 chr17:37358654 nonsynonymous SNV 0.999 0 7 hm5C_associated_SNPs_37739 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 39bp
chr1 95639441 95639441 1 + C T STAD 95639425 + 95639405 95639445 41 CGCCTGCTTGCAGAGCTTTCCAGCCCGTTTGTGAATCAGCG CGCCTGCTTGCAGAGCTTTCCAGCCCGTTTGTGAATTAGCG < 41bp 1 0.249109572339758 1 0.31018140912056 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM56;TMEM56-RWDD3 ENSG00000152078;ENSG00000271092 CDS Human other chr1:95639425 chr1:95639441 stopgain 0.996 1 37 hm5C_associated_SNPs_37740 0 0 1 0 2 TMEM56;TMEM56-RWDD3 chr1:95639372 3'AG 95639372 Downstream 70bp
chr1 95639441 95639441 1 + C T STAD 95639425 + 95639405 95639445 41 CGCCTGCTTGCAGAGCTTTCCAGCCCGTTTGTGAATCAGCG CGCCTGCTTGCAGAGCTTTCCAGCCCGTTTGTGAATTAGCG < 41bp 1 0.249109572339758 1 0.31018140912056 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM56;TMEM56-RWDD3 ENSG00000152078;ENSG00000271092 CDS Human other chr1:95639425 chr1:95639441 stopgain 0.996 1 37 hm5C_associated_SNPs_37740 0 0 1 0 2 TMEM56;TMEM56-RWDD3 chr1:95639445 5'GT 95639445 Upstream 5bp
chr2 201485953 201485953 1 + T C STAD 201485944 + 201485924 201485964 41 CTTCTGCTTTTTTACTGAAGCTGAGAAATTTCTGGCGACAG CTTCTGCTTTTTTACTGAAGCTGAGAAATCTCTGGCGACAG < 41bp 1 0.49603144997806 1 0.123355835676193 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AOX1 ENSG00000138356 CDS Human protein_coding chr2:201485944 chr2:201485953 nonsynonymous SNV 0.196 1 30 hm5C_associated_SNPs_37741 0 0 0 0 1 AOX1 chr2:201485969 5'GT 201485969 Upstream 17bp
chr3 50091792 50091792 1 + C T STAD 50091805 + 50091785 50091825 41 TGGGCACCGATCTTCCTGTTCATTCTGCAAGAACCCAAGAG TGGGCACTGATCTTCCTGTTCATTCTGCAAGAACCCAAGAG < 41bp 1 0.0725478456417169 1 0.0294938385486603 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50091805 chr3:50091792 stopgain 0.980 0 8 hm5C_associated_SNPs_37742 0 0 1 0 1 RBM6 chr3:50091828 5'GT 50091828 Upstream 37bp
chr2 190320086 190320086 1 + A G STAD 190320076 + 190320056 190320096 41 GCTGGTTTCAGTGAAACTGCCAAAATCCTCAAGCCAGGAAG GCTGGTTTCAGTGAAACTGCCAAAATCCTCGAGCCAGGAAG < 41bp 1 0.626467008980839 1 0.571805000305176 experiment 0.747065982038322 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR75 ENSG00000115368 CDS Human protein_coding chr2:190320076 chr2:190320086 synonymous SNV . 0 31 hm5C_associated_SNPs_37744 0 0 1 0 2 WDR75 chr2:190320046 3'AG 190320046 Downstream 41bp
chr2 190320086 190320086 1 + A G STAD 190320076 + 190320056 190320096 41 GCTGGTTTCAGTGAAACTGCCAAAATCCTCAAGCCAGGAAG GCTGGTTTCAGTGAAACTGCCAAAATCCTCGAGCCAGGAAG < 41bp 1 0.626467008980839 1 0.571805000305176 experiment 0.747065982038322 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR75 ENSG00000115368 CDS Human protein_coding chr2:190320076 chr2:190320086 synonymous SNV . 0 31 hm5C_associated_SNPs_37744 0 0 1 0 2 WDR75 chr2:190320170 5'GT 190320170 Upstream 85bp
chr19 34868778 34868778 1 + G A STAD 34868761 + 34868741 34868781 41 GGCCCAGCTGAACCCCGAGTCCTCCCTGTTCATCATTGCCT GGCCCAGCTGAACCCCGAGTCCTCCCTGTTCATCATTACCT < 41bp 1 0.0310069427781602 1 0.0320827662944794 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868761 chr19:34868778 nonsynonymous SNV 0.611 5 38 hm5C_associated_SNPs_37745 0 0 1 0 1 GPI chr19:34868786 5'GT 34868786 Upstream 9bp
chr2 236817445 236817445 1 + G A STAD 236817455 + 236817435 236817475 41 GAAAGTCCCAGGGAAGAGGCCACCCCGAGCCACGTCAGCCT GAAAGTCCCAAGGAAGAGGCCACCCCGAGCCACGTCAGCCT < 41bp 1 0.100515674889051 1 0.0566975772380829 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236817455 chr2:236817445 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_37746 0 0 1 0 1 AGAP1 chr2:236817382 3'AG 236817382 Downstream 64bp
chr1 45267574 45267574 1 + C T STAD 45267571 + 45267551 45267591 41 GGTGGGGGATTTTGGGCTGGCAGCCCGGTTGGAGCCTCCGG GGTGGGGGATTTTGGGCTGGCAGTCCGGTTGGAGCCTCCGG < 41bp 1 0.218437286321373 1 0.198159843683243 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267571 chr1:45267574 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_37747 0 0 1 0 2 PLK3 chr1:45267517 3'AG 45267517 Downstream 58bp
chr1 45267574 45267574 1 + C T STAD 45267571 + 45267551 45267591 41 GGTGGGGGATTTTGGGCTGGCAGCCCGGTTGGAGCCTCCGG GGTGGGGGATTTTGGGCTGGCAGTCCGGTTGGAGCCTCCGG < 41bp 1 0.218437286321373 1 0.198159843683243 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267571 chr1:45267574 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_37747 0 0 1 0 2 PLK3 chr1:45267604 5'GT 45267604 Upstream 31bp
chr6 29976041 29976041 1 + T C STAD 29976024 + 29976004 29976044 41 AACATGAGGCATAACGAGGTCCTGGGTTCTGGGCTTCTACC AACATGAGGCATAACGAGGTCCTGGGTTCTGGGCTTCCACC < 41bp 1 0.209852838482491 1 0.489329308271408 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-J ENSG00000204622 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:29976024 chr6:29976041 . . 0 38 hm5C_associated_SNPs_37750 0 0 0 0 1 HLA-J chr6:29975966 3'AG 29975966 Downstream 76bp
chr6 29976041 29976041 1 + T C STAD 29976025 + 29976005 29976045 41 ACATGAGGCATAACGAGGTCCTGGGTTCTGGGCTTCTACCC ACATGAGGCATAACGAGGTCCTGGGTTCTGGGCTTCCACCC < 41bp 1 0.574385776633074 1 0.699830412864685 experiment 0.851228446733852 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HLA-J ENSG00000204622 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:29976025 chr6:29976041 . . 0 37 hm5C_associated_SNPs_37751 0 0 0 0 1 HLA-J chr6:29975966 3'AG 29975966 Downstream 76bp
chr10 122625206 122625206 1 + G A STAD 122625218 + 122625198 122625238 41 AACTTTACGTGTTCGAAGATCTTATAATAACATTTTTACCA AACTTTACATGTTCGAAGATCTTATAATAACATTTTTACCA < 41bp 1 0.0519389390969793 1 0.102850884199142 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122625218 chr10:122625206 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_37753 0 0 1 0 2 WDR11 chr10:122625142 3'AG 122625142 Downstream 65bp
chr10 122625206 122625206 1 + G A STAD 122625218 + 122625198 122625238 41 AACTTTACGTGTTCGAAGATCTTATAATAACATTTTTACCA AACTTTACATGTTCGAAGATCTTATAATAACATTTTTACCA < 41bp 1 0.0519389390969793 1 0.102850884199142 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122625218 chr10:122625206 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_37753 0 0 1 0 2 WDR11 chr10:122625256 5'GT 122625256 Upstream 51bp
chr20 47639665 47639665 1 + T C STAD 47639658 + 47639638 47639678 41 TTGATACAGACCATTGACAACATTGTGTTCTACCCTGCGAC TTGATACAGACCATTGACAACATTGTGCTCTACCCTGCGAC < 41bp 1 0.106197612917404 1 0.0990519523620605 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47639658 chr20:47639665 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_37754 0 0 1 0 2 ARFGEF2 chr20:47639588 3'AG 47639588 Downstream 78bp
chr20 47639665 47639665 1 + T C STAD 47639658 + 47639638 47639678 41 TTGATACAGACCATTGACAACATTGTGTTCTACCCTGCGAC TTGATACAGACCATTGACAACATTGTGCTCTACCCTGCGAC < 41bp 1 0.106197612917404 1 0.0990519523620605 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47639658 chr20:47639665 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_37754 0 0 1 0 2 ARFGEF2 chr20:47639718 5'GT 47639718 Upstream 54bp
chr2 207651571 207651571 1 + T A STAD 207651570 + 207651550 207651590 41 GATGAATTACTTTCCCCTGGCTCCTTTTAATCAGCTTCTGC GATGAATTACTTTCCCCTGGCACCTTTTAATCAGCTTCTGC < 41bp 1 0.289544100013906 1 0.0635062456130981 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207651570 chr2:207651571 synonymous SNV . 0 22 hm5C_associated_SNPs_37755 0 0 1 0 1 FASTKD2 chr2:207651623 5'GT 207651623 Upstream 53bp
chr2 207651571 207651571 1 + T A STAD 207651572 + 207651552 207651592 41 TGAATTACTTTCCCCTGGCTCCTTTTAATCAGCTTCTGCAA TGAATTACTTTCCCCTGGCACCTTTTAATCAGCTTCTGCAA < 41bp 1 0.0342656689342255 1 0.0149722397327423 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207651572 chr2:207651571 synonymous SNV . 0 20 hm5C_associated_SNPs_37756 0 0 1 0 1 FASTKD2 chr2:207651623 5'GT 207651623 Upstream 53bp
chr11 66834258 66834258 1 + C T STAD 66834276 + 66834256 66834296 41 AGCGTCCTGCTGCTTTGCTTCGATGTCACCAGCCCGAACAG AGTGTCCTGCTGCTTTGCTTCGATGTCACCAGCCCGAACAG < 41bp 1 0.54803004751275 1 0.841198325157166 experiment 0.9039399049745 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RHOD ENSG00000173156 CDS Human protein_coding chr11:66834276 chr11:66834258 synonymous SNV . 0 3 hm5C_associated_SNPs_37757 0 0 0 0 2 RHOD chr11:66834209 3'AG 66834209 Downstream 50bp
chr11 66834258 66834258 1 + C T STAD 66834276 + 66834256 66834296 41 AGCGTCCTGCTGCTTTGCTTCGATGTCACCAGCCCGAACAG AGTGTCCTGCTGCTTTGCTTCGATGTCACCAGCCCGAACAG < 41bp 1 0.54803004751275 1 0.841198325157166 experiment 0.9039399049745 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RHOD ENSG00000173156 CDS Human protein_coding chr11:66834276 chr11:66834258 synonymous SNV . 0 3 hm5C_associated_SNPs_37757 0 0 0 0 2 RHOD chr11:66834318 5'GT 66834318 Upstream 61bp
chr4 1343557 1343557 1 + G A STAD 1343544 + 1343524 1343564 41 AGGCGGCACAGAGGCTGAGGCAGGCGACCACCCGGGCCGTG AGGCGGCACAGAGGCTGAGGCAGGCGACCACCCAGGCCGTG < 41bp 1 0.75131593687826 1 0.87270575761795 experiment 0.497368126243479 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UVSSA ENSG00000163945 CDS Human protein_coding chr4:1343544 chr4:1343557 nonsynonymous SNV 0.001 0 34 hm5C_associated_SNPs_37758 0 0 0 0 1 UVSSA chr4:1343642 5'GT 1343642 Upstream 86bp
chr12 56420736 56420736 1 + G A STAD 56420731 + 56420711 56420751 41 GAGCCTCACTCCCCTGGGGGCATCCGGCTGCCCAATGGCAA GAGCCTCACTCCCCTGGGGGCATCCAGCTGCCCAATGGCAA < 41bp 1 0.0809022592083556 1 0.0628744959831238 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IKZF4 ENSG00000123411 CDS Human protein_coding chr12:56420731 chr12:56420736 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_37760 0 0 1 0 1 IKZF4 chr12:56420825 5'GT 56420825 Upstream 90bp
chr1 228333243 228333243 1 + C T STAD 228333247 + 228333227 228333267 41 GGCCTGTGGTGCTGAGCGGGCCTTCGGGAGCTGGGAAGAGC GGCCTGTGGTGCTGAGTGGGCCTTCGGGAGCTGGGAAGAGC < 41bp 1 0.0551328470436281 1 0.175573736429214 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333247 chr1:228333243 nonsynonymous SNV 0.320 0 17 hm5C_associated_SNPs_37764 0 0 1 0 2 GUK1 chr1:228333212 3'AG 228333212 Downstream 32bp
chr1 228333243 228333243 1 + C T STAD 228333247 + 228333227 228333267 41 GGCCTGTGGTGCTGAGCGGGCCTTCGGGAGCTGGGAAGAGC GGCCTGTGGTGCTGAGTGGGCCTTCGGGAGCTGGGAAGAGC < 41bp 1 0.0551328470436281 1 0.175573736429214 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333247 chr1:228333243 nonsynonymous SNV 0.320 0 17 hm5C_associated_SNPs_37764 0 0 1 0 2 GUK1 chr1:228333325 5'GT 228333325 Upstream 83bp
chr17 80676889 80676889 1 + G T STAD 80676908 + 80676888 80676928 41 GGAGCGTGCTGGTGATGGAGCACATGGACATGAGGCATCTG GTAGCGTGCTGGTGATGGAGCACATGGACATGAGGCATCTG < 41bp 1 0.485376705226122 1 0.0667519569396973 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80676908 chr17:80676889 synonymous SNV . 0 2 hm5C_associated_SNPs_37765 0 0 1 0 1 FN3KRP chr17:80676933 5'GT 80676933 Upstream 45bp
chr16 2489443 2489443 1 + C T STAD 2489428 + 2489408 2489448 41 GGATGTCTGACCAGCTCCTACCTCCTCTGGGAAAGCGACAG GGATGTCTGACCAGCTCCTACCTCCTCTGGGAAAGTGACAG < 41bp 1 0.022874809402935 1 0.0376834571361542 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCNF ENSG00000162063 CDS Human protein_coding chr16:2489428 chr16:2489443 synonymous SNV . 0 36 hm5C_associated_SNPs_37770 0 0 1 0 2 CCNF chr16:2489354 3'AG 2489354 Downstream 90bp
chr16 2489443 2489443 1 + C T STAD 2489428 + 2489408 2489448 41 GGATGTCTGACCAGCTCCTACCTCCTCTGGGAAAGCGACAG GGATGTCTGACCAGCTCCTACCTCCTCTGGGAAAGTGACAG < 41bp 1 0.022874809402935 1 0.0376834571361542 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCNF ENSG00000162063 CDS Human protein_coding chr16:2489428 chr16:2489443 synonymous SNV . 0 36 hm5C_associated_SNPs_37770 0 0 1 0 2 CCNF chr16:2489458 5'GT 2489458 Upstream 16bp
chr12 6639960 6639960 1 + C A STAD 6639957 + 6639937 6639977 41 CCAAGCAGGTAGCCAGAGAGCGCCATCAGCCAAGAAACCAT CCAAGCAGGTAGCCAGAGAGCGCAATCAGCCAAGAAACCAT < 41bp 1 0.720339467676812 1 0.458755761384964 experiment 0.559321064646375 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6639957 chr12:6639960 nonsynonymous SNV 0.041 1 24 hm5C_associated_SNPs_37771 0 0 1 0 1 NCAPD2 chr12:6639983 5'GT 6639983 Upstream 24bp
chr2 74077571 74077571 1 + C T STAD 74077580 + 74077560 74077600 41 GATTACTGCAACACAGAGAACGAAGAAGAACTTTTCCTCAT GATTACTGCAATACAGAGAACGAAGAAGAACTTTTCCTCAT < 41bp 1 0.589424771022545 1 0.603228807449341 experiment 0.82115045795491 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STAMBP ENSG00000124356 CDS Human protein_coding chr2:74077580 chr2:74077571 synonymous SNV . 0 12 hm5C_associated_SNPs_37773 0 0 1 0 2 STAMBP chr2:74077503 3'AG 74077503 Downstream 69bp
chr2 74077571 74077571 1 + C T STAD 74077580 + 74077560 74077600 41 GATTACTGCAACACAGAGAACGAAGAAGAACTTTTCCTCAT GATTACTGCAATACAGAGAACGAAGAAGAACTTTTCCTCAT < 41bp 1 0.589424771022545 1 0.603228807449341 experiment 0.82115045795491 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STAMBP ENSG00000124356 CDS Human protein_coding chr2:74077580 chr2:74077571 synonymous SNV . 0 12 hm5C_associated_SNPs_37773 0 0 1 0 2 STAMBP chr2:74077640 5'GT 74077640 Upstream 70bp
chr1 26566316 26566316 1 + C T STAD 26566310 + 26566290 26566330 41 AAATATCCAACTGAGGGGATCTCTCACGTCACTTCACCGAG AAATATCCAACTGAGGGGATCTCTCATGTCACTTCACCGAG < 41bp 1 0.112679772201351 1 0.0644918978214264 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP85 ENSG00000130695 CDS Human protein_coding chr1:26566310 chr1:26566316 synonymous SNV . 0 27 hm5C_associated_SNPs_37774 0 0 1 0 2 CEP85 chr1:26566253 3'AG 26566253 Downstream 64bp
chr1 26566316 26566316 1 + C T STAD 26566310 + 26566290 26566330 41 AAATATCCAACTGAGGGGATCTCTCACGTCACTTCACCGAG AAATATCCAACTGAGGGGATCTCTCATGTCACTTCACCGAG < 41bp 1 0.112679772201351 1 0.0644918978214264 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP85 ENSG00000130695 CDS Human protein_coding chr1:26566310 chr1:26566316 synonymous SNV . 0 27 hm5C_associated_SNPs_37774 0 0 1 0 2 CEP85 chr1:26566329 5'GT 26566329 Upstream 14bp
chr15 41247770 41247770 1 + C T STAD 41247789 + 41247769 41247809 41 GCGCCTGAAGAGGCCATTGCCACGCAGATCCTGGCCTGCCG GTGCCTGAAGAGGCCATTGCCACGCAGATCCTGGCCTGCCG < 41bp 1 0.788740384200848 1 0.824603319168091 experiment 0.422519231598303 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHAC1 ENSG00000128965 CDS Human protein_coding chr15:41247789 chr15:41247770 nonsynonymous SNV 0.441 3 2 hm5C_associated_SNPs_37776 0 0 1 0 1 CHAC1 chr15:41247748 3'AG 41247748 Downstream 23bp
chr1 109772104 109772104 1 + G A STAD 109772124 + 109772104 109772144 41 GGAGCGGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCC AGAGCGGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCC < 41bp 1 0.580154358163321 1 0.808368682861328 experiment 0.839691283673357 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SARS ENSG00000031698 CDS Human protein_coding chr1:109772124 chr1:109772104 synonymous SNV . 0 1 hm5C_associated_SNPs_37778 0 0 1 0 2 SARS chr1:109772036 3'AG 109772036 Downstream 69bp
chr1 109772104 109772104 1 + G A STAD 109772124 + 109772104 109772144 41 GGAGCGGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCC AGAGCGGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCC < 41bp 1 0.580154358163321 1 0.808368682861328 experiment 0.839691283673357 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SARS ENSG00000031698 CDS Human protein_coding chr1:109772124 chr1:109772104 synonymous SNV . 0 1 hm5C_associated_SNPs_37778 0 0 1 0 2 SARS chr1:109772194 5'GT 109772194 Upstream 91bp
chr11 988598 988598 1 + A G STAD 988594 + 988574 988614 41 GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGCGACCGC GGCAGCGGGCCGTGGACCTCCTCTGCGCCATGTGCGACCGC < 41bp 1 0.571663907938254 1 0.230786472558975 experiment 0.856672184123492 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:988594 chr11:988598 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_37779 0 0 1 0 2 AP2A2 chr11:988552 3'AG 988552 Downstream 47bp
chr11 988598 988598 1 + A G STAD 988594 + 988574 988614 41 GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGCGACCGC GGCAGCGGGCCGTGGACCTCCTCTGCGCCATGTGCGACCGC < 41bp 1 0.571663907938254 1 0.230786472558975 experiment 0.856672184123492 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:988594 chr11:988598 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_37779 0 0 1 0 2 AP2A2 chr11:988689 5'GT 988689 Upstream 92bp
chrX 48457775 48457775 1 + G A STAD 48457763 + 48457743 48457783 41 CTTTGAGGATGATCCTCGGGCCCTGGGGGCCCGTGGGCACC CTTTGAGGATGATCCTCGGGCCCTGGGGGCCCATGGGCACC < 41bp 1 0.160797891083307 1 0.0681198835372925 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457763 chrX:48457775 nonsynonymous SNV 0.998 3 33 hm5C_associated_SNPs_37780 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 76bp
chrX 48457775 48457775 1 + G A STAD 48457772 + 48457752 48457792 41 TGATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTG TGATCCTCGGGCCCTGGGGGCCCATGGGCACCGTCGTTCTG < 41bp 1 0.146205443784531 1 0.0588482618331909 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457772 chrX:48457775 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_37781 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 76bp
chrX 48457775 48457775 1 + G A STAD 48457773 + 48457753 48457793 41 GATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGT GATCCTCGGGCCCTGGGGGCCCATGGGCACCGTCGTTCTGT < 41bp 1 0.18689609123279 1 0.214610069990158 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457773 chrX:48457775 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_37782 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 76bp
chrX 48457775 48457775 1 + G A STAD 48457774 + 48457754 48457794 41 ATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGTC ATCCTCGGGCCCTGGGGGCCCATGGGCACCGTCGTTCTGTC < 41bp 1 0.657908298003491 1 0.45886442065239 experiment 0.684183403993018 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457774 chrX:48457775 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_37783 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 76bp
chr1 55073633 55073633 1 + G A STAD 55073619 + 55073599 55073639 41 CCCTTCCTTCACTCAGGGACCCCTATGTCATCGCGCTGAGG CCCTTCCTTCACTCAGGGACCCCTATGTCATCGCACTGAGG < 41bp 1 0.108720434619539 1 0.0265292227268219 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55073619 chr1:55073633 synonymous SNV . 0 35 hm5C_associated_SNPs_37784 0 0 0 0 1 ACOT11 chr1:55073615 3'AG 55073615 Downstream 19bp
chr8 28906535 28906535 1 + T C STAD 28906521 + 28906501 28906541 41 ATGTGCAGAGTCCAGGAGGCCACTCAAACAGTGATGATGTC ATGTGCAGAGTCCAGGAGGCCACTCAAACAGTGACGATGTC < 41bp 1 0.162391650747259 1 0.0698150396347046 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906521 chr8:28906535 synonymous SNV . 0 35 hm5C_associated_SNPs_37785 0 0 1 1 4 HMBOX1 chr8:28906471 3'AG 28906471 Downstream 65bp
chr8 28906535 28906535 1 + T C STAD 28906521 + 28906501 28906541 41 ATGTGCAGAGTCCAGGAGGCCACTCAAACAGTGATGATGTC ATGTGCAGAGTCCAGGAGGCCACTCAAACAGTGACGATGTC < 41bp 1 0.162391650747259 1 0.0698150396347046 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906521 chr8:28906535 synonymous SNV . 0 35 hm5C_associated_SNPs_37785 0 0 1 1 4 HMBOX1 chr8:28906474 3'AG 28906474 Downstream 62bp
chr8 28906535 28906535 1 + T C STAD 28906521 + 28906501 28906541 41 ATGTGCAGAGTCCAGGAGGCCACTCAAACAGTGATGATGTC ATGTGCAGAGTCCAGGAGGCCACTCAAACAGTGACGATGTC < 41bp 1 0.162391650747259 1 0.0698150396347046 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906521 chr8:28906535 synonymous SNV . 0 35 hm5C_associated_SNPs_37785 0 0 1 1 4 HMBOX1 chr8:28906477 3'AG 28906477 Downstream 59bp
chr8 28906535 28906535 1 + T C STAD 28906521 + 28906501 28906541 41 ATGTGCAGAGTCCAGGAGGCCACTCAAACAGTGATGATGTC ATGTGCAGAGTCCAGGAGGCCACTCAAACAGTGACGATGTC < 41bp 1 0.162391650747259 1 0.0698150396347046 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906521 chr8:28906535 synonymous SNV . 0 35 hm5C_associated_SNPs_37785 0 0 1 1 4 HMBOX1 chr8:28906565 5'GT 28906565 Upstream 31bp
chr8 28906535 28906535 1 + T C STAD 28906525 + 28906505 28906545 41 GCAGAGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACG GCAGAGTCCAGGAGGCCACTCAAACAGTGACGATGTCGACG < 41bp 1 0.301478409318869 1 0.195876657962799 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906525 chr8:28906535 synonymous SNV . 0 31 hm5C_associated_SNPs_37786 0 0 1 1 4 HMBOX1 chr8:28906471 3'AG 28906471 Downstream 65bp
chr8 28906535 28906535 1 + T C STAD 28906525 + 28906505 28906545 41 GCAGAGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACG GCAGAGTCCAGGAGGCCACTCAAACAGTGACGATGTCGACG < 41bp 1 0.301478409318869 1 0.195876657962799 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906525 chr8:28906535 synonymous SNV . 0 31 hm5C_associated_SNPs_37786 0 0 1 1 4 HMBOX1 chr8:28906474 3'AG 28906474 Downstream 62bp
chr8 28906535 28906535 1 + T C STAD 28906525 + 28906505 28906545 41 GCAGAGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACG GCAGAGTCCAGGAGGCCACTCAAACAGTGACGATGTCGACG < 41bp 1 0.301478409318869 1 0.195876657962799 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906525 chr8:28906535 synonymous SNV . 0 31 hm5C_associated_SNPs_37786 0 0 1 1 4 HMBOX1 chr8:28906477 3'AG 28906477 Downstream 59bp
chr8 28906535 28906535 1 + T C STAD 28906525 + 28906505 28906545 41 GCAGAGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACG GCAGAGTCCAGGAGGCCACTCAAACAGTGACGATGTCGACG < 41bp 1 0.301478409318869 1 0.195876657962799 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906525 chr8:28906535 synonymous SNV . 0 31 hm5C_associated_SNPs_37786 0 0 1 1 4 HMBOX1 chr8:28906565 5'GT 28906565 Upstream 31bp
chr8 28906535 28906535 1 + T C STAD 28906529 + 28906509 28906549 41 AGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACGGGAA AGTCCAGGAGGCCACTCAAACAGTGACGATGTCGACGGGAA < 41bp 1 0.695335860425846 1 0.553985714912415 experiment 0.609328279148307 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906529 chr8:28906535 synonymous SNV . 0 27 hm5C_associated_SNPs_37787 0 0 1 1 4 HMBOX1 chr8:28906471 3'AG 28906471 Downstream 65bp
chr8 28906535 28906535 1 + T C STAD 28906529 + 28906509 28906549 41 AGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACGGGAA AGTCCAGGAGGCCACTCAAACAGTGACGATGTCGACGGGAA < 41bp 1 0.695335860425846 1 0.553985714912415 experiment 0.609328279148307 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906529 chr8:28906535 synonymous SNV . 0 27 hm5C_associated_SNPs_37787 0 0 1 1 4 HMBOX1 chr8:28906474 3'AG 28906474 Downstream 62bp
chr8 28906535 28906535 1 + T C STAD 28906529 + 28906509 28906549 41 AGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACGGGAA AGTCCAGGAGGCCACTCAAACAGTGACGATGTCGACGGGAA < 41bp 1 0.695335860425846 1 0.553985714912415 experiment 0.609328279148307 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906529 chr8:28906535 synonymous SNV . 0 27 hm5C_associated_SNPs_37787 0 0 1 1 4 HMBOX1 chr8:28906477 3'AG 28906477 Downstream 59bp
chr8 28906535 28906535 1 + T C STAD 28906529 + 28906509 28906549 41 AGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACGGGAA AGTCCAGGAGGCCACTCAAACAGTGACGATGTCGACGGGAA < 41bp 1 0.695335860425846 1 0.553985714912415 experiment 0.609328279148307 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906529 chr8:28906535 synonymous SNV . 0 27 hm5C_associated_SNPs_37787 0 0 1 1 4 HMBOX1 chr8:28906565 5'GT 28906565 Upstream 31bp
chr8 28906535 28906535 1 + T C STAD 28906541 + 28906521 28906561 41 CACTCAAACAGTGATGATGTCGACGGGAATGACTACTCTGA CACTCAAACAGTGACGATGTCGACGGGAATGACTACTCTGA < 41bp 1 0.762079870350823 1 0.3194460272789 experiment 0.475840259298355 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906541 chr8:28906535 synonymous SNV . 0 15 hm5C_associated_SNPs_37788 0 0 1 1 4 HMBOX1 chr8:28906471 3'AG 28906471 Downstream 65bp
chr8 28906535 28906535 1 + T C STAD 28906541 + 28906521 28906561 41 CACTCAAACAGTGATGATGTCGACGGGAATGACTACTCTGA CACTCAAACAGTGACGATGTCGACGGGAATGACTACTCTGA < 41bp 1 0.762079870350823 1 0.3194460272789 experiment 0.475840259298355 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906541 chr8:28906535 synonymous SNV . 0 15 hm5C_associated_SNPs_37788 0 0 1 1 4 HMBOX1 chr8:28906474 3'AG 28906474 Downstream 62bp
chr8 28906535 28906535 1 + T C STAD 28906541 + 28906521 28906561 41 CACTCAAACAGTGATGATGTCGACGGGAATGACTACTCTGA CACTCAAACAGTGACGATGTCGACGGGAATGACTACTCTGA < 41bp 1 0.762079870350823 1 0.3194460272789 experiment 0.475840259298355 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906541 chr8:28906535 synonymous SNV . 0 15 hm5C_associated_SNPs_37788 0 0 1 1 4 HMBOX1 chr8:28906477 3'AG 28906477 Downstream 59bp
chr8 28906535 28906535 1 + T C STAD 28906541 + 28906521 28906561 41 CACTCAAACAGTGATGATGTCGACGGGAATGACTACTCTGA CACTCAAACAGTGACGATGTCGACGGGAATGACTACTCTGA < 41bp 1 0.762079870350823 1 0.3194460272789 experiment 0.475840259298355 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906541 chr8:28906535 synonymous SNV . 0 15 hm5C_associated_SNPs_37788 0 0 1 1 4 HMBOX1 chr8:28906565 5'GT 28906565 Upstream 31bp
chr8 28906535 28906535 1 + T C STAD 28906553 + 28906533 28906573 41 GATGATGTCGACGGGAATGACTACTCTGAGCAGGTGAGCCC GACGATGTCGACGGGAATGACTACTCTGAGCAGGTGAGCCC < 41bp 1 0.640590449828104 1 0.323295056819916 experiment 0.718819100343792 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906553 chr8:28906535 synonymous SNV . 0 3 hm5C_associated_SNPs_37789 0 0 1 1 4 HMBOX1 chr8:28906471 3'AG 28906471 Downstream 65bp
chr8 28906535 28906535 1 + T C STAD 28906553 + 28906533 28906573 41 GATGATGTCGACGGGAATGACTACTCTGAGCAGGTGAGCCC GACGATGTCGACGGGAATGACTACTCTGAGCAGGTGAGCCC < 41bp 1 0.640590449828104 1 0.323295056819916 experiment 0.718819100343792 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906553 chr8:28906535 synonymous SNV . 0 3 hm5C_associated_SNPs_37789 0 0 1 1 4 HMBOX1 chr8:28906474 3'AG 28906474 Downstream 62bp
chr8 28906535 28906535 1 + T C STAD 28906553 + 28906533 28906573 41 GATGATGTCGACGGGAATGACTACTCTGAGCAGGTGAGCCC GACGATGTCGACGGGAATGACTACTCTGAGCAGGTGAGCCC < 41bp 1 0.640590449828104 1 0.323295056819916 experiment 0.718819100343792 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906553 chr8:28906535 synonymous SNV . 0 3 hm5C_associated_SNPs_37789 0 0 1 1 4 HMBOX1 chr8:28906477 3'AG 28906477 Downstream 59bp
chr8 28906535 28906535 1 + T C STAD 28906553 + 28906533 28906573 41 GATGATGTCGACGGGAATGACTACTCTGAGCAGGTGAGCCC GACGATGTCGACGGGAATGACTACTCTGAGCAGGTGAGCCC < 41bp 1 0.640590449828104 1 0.323295056819916 experiment 0.718819100343792 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906553 chr8:28906535 synonymous SNV . 0 3 hm5C_associated_SNPs_37789 0 0 1 1 4 HMBOX1 chr8:28906565 5'GT 28906565 Upstream 31bp
chr2 219679346 219679346 1 + C T STAD 219679360 + 219679340 219679380 41 CCCCACCGCTGGCTGAGAAACAGCCAGCCTGCTACCCCCAG CCCCACTGCTGGCTGAGAAACAGCCAGCCTGCTACCCCCAG < 41bp 1 0.459350611691194 1 0.246145486831665 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219679360 chr2:219679346 nonsynonymous SNV 0.580 5 7 hm5C_associated_SNPs_37790 2 0 1 0 1 CYP27A1 chr2:219679268 3'AG 219679268 Downstream 79bp
chr6 32942267 32942267 1 + C T STAD 32942278 + 32942258 32942298 41 GCAGGGTTGCTGGGGCTGGGCCCAGAAGCAGCAGCACCAGG GCAGGGTTGTTGGGGCTGGGCCCAGAAGCAGCAGCACCAGG < 41bp 1 0.519060072187939 1 0.170149981975555 experiment 0.961879855624121 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32942278 chr6:32942267 synonymous SNV . 0 10 hm5C_associated_SNPs_37791 0 0 1 0 1 BRD2 chr6:32942239 3'AG 32942239 Downstream 29bp
chr1 59812011 59812011 1 + T C STAD 59811996 + 59811976 59812016 41 ACAGGATCAATGAGACCAAGCACAGTGTCCTCCAGTACGTC ACAGGATCAATGAGACCAAGCACAGTGTCCTCCAGCACGTC < 41bp 1 0.493926336070769 1 0.0674289464950562 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FGGY ENSG00000172456 CDS Human protein_coding chr1:59811996 chr1:59812011 nonsynonymous SNV 0.089 3 36 hm5C_associated_SNPs_37792 0 0 0 0 2 FGGY chr1:59811919 3'AG 59811919 Downstream 93bp
chr1 59812011 59812011 1 + T C STAD 59811996 + 59811976 59812016 41 ACAGGATCAATGAGACCAAGCACAGTGTCCTCCAGTACGTC ACAGGATCAATGAGACCAAGCACAGTGTCCTCCAGCACGTC < 41bp 1 0.493926336070769 1 0.0674289464950562 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FGGY ENSG00000172456 CDS Human protein_coding chr1:59811996 chr1:59812011 nonsynonymous SNV 0.089 3 36 hm5C_associated_SNPs_37792 0 0 0 0 2 FGGY chr1:59812070 5'GT 59812070 Upstream 60bp
chr5 177633848 177633848 1 + C A STAD 177633835 + 177633815 177633855 41 AGAAAATCTTCGTTGGGGGTCTGAATCCTGAAGCCACTGAG AGAAAATCTTCGTTGGGGGTCTGAATCCTGAAGACACTGAG < 41bp 1 0.488044327504085 1 0.365784764289856 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPAB ENSG00000197451 CDS Human protein_coding chr5:177633835 chr5:177633848 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_37793 0 0 1 0 1 HNRNPAB chr5:177633891 5'GT 177633891 Upstream 44bp
chr5 177633848 177633848 1 + C A STAD 177633841 + 177633821 177633861 41 TCTTCGTTGGGGGTCTGAATCCTGAAGCCACTGAGGAAAAG TCTTCGTTGGGGGTCTGAATCCTGAAGACACTGAGGAAAAG < 41bp 1 0.590466089743062 1 0.374136239290237 experiment 0.819067820513877 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPAB ENSG00000197451 CDS Human protein_coding chr5:177633841 chr5:177633848 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_37794 0 0 1 0 1 HNRNPAB chr5:177633891 5'GT 177633891 Upstream 44bp
chr5 177633848 177633848 1 + C A STAD 177633849 + 177633829 177633869 41 GGGGGTCTGAATCCTGAAGCCACTGAGGAAAAGATCAGGGA GGGGGTCTGAATCCTGAAGACACTGAGGAAAAGATCAGGGA < 41bp 1 0.437125771551946 1 0.162801325321198 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPAB ENSG00000197451 CDS Human protein_coding chr5:177633849 chr5:177633848 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_37795 0 0 1 0 1 HNRNPAB chr5:177633891 5'GT 177633891 Upstream 44bp
chr5 177633848 177633848 1 + C A STAD 177633851 + 177633831 177633871 41 GGGTCTGAATCCTGAAGCCACTGAGGAAAAGATCAGGGAGT GGGTCTGAATCCTGAAGACACTGAGGAAAAGATCAGGGAGT < 41bp 1 0.606469327072594 1 0.345520794391632 experiment 0.787061345854811 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPAB ENSG00000197451 CDS Human protein_coding chr5:177633851 chr5:177633848 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_37796 0 0 1 0 1 HNRNPAB chr5:177633891 5'GT 177633891 Upstream 44bp
chr1 26883500 26883500 1 + T C STAD 26883509 + 26883489 26883529 41 AAGCTATACCGTCGTGAGATCAAGCCACCCTTCAAGCCAGC AAGCTATACCGCCGTGAGATCAAGCCACCCTTCAAGCCAGC < 41bp 1 0.29113478305333 1 0.657487571239471 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26883509 chr1:26883500 synonymous SNV . 0 12 hm5C_associated_SNPs_37797 0 0 1 0 1 RPS6KA1 chr1:26883489 3'AG 26883489 Downstream 12bp
chr17 4701657 4701657 1 + G A STAD 4701676 + 4701656 4701696 41 GGCAAGTACTTTTGGGAGACCAGATACCCAAATTCGCCGTT GACAAGTACTTTTGGGAGACCAGATACCCAAATTCGCCGTT < 41bp 1 0.705197473326576 1 0.662781834602356 experiment 0.589605053346848 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMB6 ENSG00000142507 CDS Human protein_coding chr17:4701676 chr17:4701657 synonymous SNV . 0 2 hm5C_associated_SNPs_37798 0 0 1 0 1 PSMB6 chr17:4701575 3'AG 4701575 Downstream 83bp
chr9 2186173 2186173 1 + G T STAD 2186154 + 2186134 2186174 41 GAGTGCCCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGAGG GAGTGCCCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGATG < 41bp 1 0.237480261794933 1 0.085186630487442 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2186154 chr9:2186173 nonsynonymous SNV 0.997 1 40 hm5C_associated_SNPs_37799 0 0 1 0 1 SMARCA2 chr9:2186096 3'AG 2186096 Downstream 78bp
chr9 2186173 2186173 1 + G T STAD 2186155 + 2186135 2186175 41 AGTGCCCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGAGGA AGTGCCCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGATGA < 41bp 1 0.324110910503933 1 0.588355481624603 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2186155 chr9:2186173 nonsynonymous SNV 0.997 1 39 hm5C_associated_SNPs_37800 0 0 1 0 1 SMARCA2 chr9:2186096 3'AG 2186096 Downstream 78bp
chr9 2186173 2186173 1 + G T STAD 2186182 + 2186162 2186202 41 GAAGAGAGTGAGGATGAAAGCAATGAAGAGGAGGAAGAGGA GAAGAGAGTGATGATGAAAGCAATGAAGAGGAGGAAGAGGA < 41bp 1 0.261531025400006 1 0.346851944923401 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2186182 chr9:2186173 nonsynonymous SNV 0.997 1 12 hm5C_associated_SNPs_37801 0 0 1 0 1 SMARCA2 chr9:2186096 3'AG 2186096 Downstream 78bp
chr20 43243338 43243338 1 + C T STAD 43243326 + 43243306 43243346 41 AAGCTGGCTGGAGACATGGGCGAGCTGGCACTCGAGGGGGC AAGCTGGCTGGAGACATGGGCGAGCTGGCACTTGAGGGGGC < 41bp 1 0.677398179379485 1 0.442978084087372 experiment 0.64520364124103 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKIG ENSG00000168734 CDS Human protein_coding chr20:43243326 chr20:43243338 synonymous SNV . 0 33 hm5C_associated_SNPs_37803 0 0 1 0 1 PKIG chr20:43243348 5'GT 43243348 Upstream 11bp
chr16 56966259 56966259 1 + G A STAD 56966261 + 56966241 56966281 41 GACCGCGGCTGGAGTGTGGGCCACCTCAAGGCCCACCTGAG GACCGCGGCTGGAGTGTGAGCCACCTCAAGGCCCACCTGAG < 41bp 1 0.38873594477801 1 0.106992214918137 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56966261 chr16:56966259 nonsynonymous SNV 0.983 0 19 hm5C_associated_SNPs_37804 0 0 1 0 1 HERPUD1 chr16:56966303 5'GT 56966303 Upstream 45bp
chr16 56966259 56966259 1 + G A STAD 56966262 + 56966242 56966282 41 ACCGCGGCTGGAGTGTGGGCCACCTCAAGGCCCACCTGAGC ACCGCGGCTGGAGTGTGAGCCACCTCAAGGCCCACCTGAGC < 41bp 1 0.675764605365647 1 0.271750032901764 experiment 0.648470789268706 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56966262 chr16:56966259 nonsynonymous SNV 0.983 0 18 hm5C_associated_SNPs_37805 0 0 1 0 1 HERPUD1 chr16:56966303 5'GT 56966303 Upstream 45bp
chr16 56966259 56966259 1 + G A STAD 56966272 + 56966252 56966292 41 GAGTGTGGGCCACCTCAAGGCCCACCTGAGCCGCGTCTACC GAGTGTGAGCCACCTCAAGGCCCACCTGAGCCGCGTCTACC < 41bp 1 0.223060466337377 1 0.0781300663948059 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56966272 chr16:56966259 nonsynonymous SNV 0.983 0 8 hm5C_associated_SNPs_37806 0 0 1 0 1 HERPUD1 chr16:56966303 5'GT 56966303 Upstream 45bp
chr16 56966259 56966259 1 + G A STAD 56966273 + 56966253 56966293 41 AGTGTGGGCCACCTCAAGGCCCACCTGAGCCGCGTCTACCC AGTGTGAGCCACCTCAAGGCCCACCTGAGCCGCGTCTACCC < 41bp 1 0.422579458387799 1 0.0529174208641052 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56966273 chr16:56966259 nonsynonymous SNV 0.983 0 7 hm5C_associated_SNPs_37807 0 0 1 0 1 HERPUD1 chr16:56966303 5'GT 56966303 Upstream 45bp
chr16 56966259 56966259 1 + G A STAD 56966274 + 56966254 56966294 41 GTGTGGGCCACCTCAAGGCCCACCTGAGCCGCGTCTACCCC GTGTGAGCCACCTCAAGGCCCACCTGAGCCGCGTCTACCCC < 41bp 1 0.668035752586632 1 0.0339752733707428 experiment 0.663928494826736 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56966274 chr16:56966259 nonsynonymous SNV 0.983 0 6 hm5C_associated_SNPs_37808 0 0 1 0 1 HERPUD1 chr16:56966303 5'GT 56966303 Upstream 45bp
chr4 57340534 57340534 1 + T C STAD 57340545 + 57340525 57340565 41 ACCAGGCCATGAAAATCCTACAAAAAGCTGAAGGTTGGAAG ACCAGGCCACGAAAATCCTACAAAAAGCTGAAGGTTGGAAG < 41bp 1 0.528787363807641 1 0.340191006660461 experiment 0.942425272384719 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRP72 ENSG00000174780 CDS Human protein_coding chr4:57340545 chr4:57340534 nonsynonymous SNV 0.996 1 10 hm5C_associated_SNPs_37809 0 0 1 0 2 SRP72 chr4:57340446 3'AG 57340446 Downstream 89bp
chr4 57340534 57340534 1 + T C STAD 57340545 + 57340525 57340565 41 ACCAGGCCATGAAAATCCTACAAAAAGCTGAAGGTTGGAAG ACCAGGCCACGAAAATCCTACAAAAAGCTGAAGGTTGGAAG < 41bp 1 0.528787363807641 1 0.340191006660461 experiment 0.942425272384719 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRP72 ENSG00000174780 CDS Human protein_coding chr4:57340545 chr4:57340534 nonsynonymous SNV 0.996 1 10 hm5C_associated_SNPs_37809 0 0 1 0 2 SRP72 chr4:57340557 5'GT 57340557 Upstream 24bp
chr9 35793058 35793058 1 + G A STAD 35793057 + 35793037 35793077 41 AGCAGGCCACCCACTTCATCCGGGCCAACGGGCGCAGTGAG AGCAGGCCACCCACTTCATCCAGGCCAACGGGCGCAGTGAG < 41bp 1 0.51490278966032 1 0.925572395324707 experiment 0.97019442067936 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NPR2 ENSG00000159899 CDS Human protein_coding chr9:35793057 chr9:35793058 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_37810 0 0 0 0 1 NPR2 chr9:35793072 5'GT 35793072 Upstream 15bp
chr16 67316181 67316181 1 + A G STAD 67316185 + 67316165 67316205 41 GGCTGGCATGGCTACAATGCCAGGGGGGCCGGGAGCTGACA GGCTGGCATGGCTACAGTGCCAGGGGGGCCGGGAGCTGACA < 41bp 1 0.725647999633505 1 0.951493501663208 experiment 0.548704000732989 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67316185 chr16:67316181 synonymous SNV . 0 17 hm5C_associated_SNPs_37811 0 0 1 0 2 PLEKHG4 chr16:67316104 3'AG 67316104 Downstream 78bp
chr16 67316181 67316181 1 + A G STAD 67316185 + 67316165 67316205 41 GGCTGGCATGGCTACAATGCCAGGGGGGCCGGGAGCTGACA GGCTGGCATGGCTACAGTGCCAGGGGGGCCGGGAGCTGACA < 41bp 1 0.725647999633505 1 0.951493501663208 experiment 0.548704000732989 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67316185 chr16:67316181 synonymous SNV . 0 17 hm5C_associated_SNPs_37811 0 0 1 0 2 PLEKHG4 chr16:67316252 5'GT 67316252 Upstream 72bp
chrX 41089041 41089041 1 + A G STAD 41089025 + 41089005 41089045 41 AAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAAAGCCA AAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAAGGCCA < 41bp 1 0.238126552518316 1 0.808076202869415 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089025 chrX:41089041 synonymous SNV . 0 37 hm5C_associated_SNPs_37812 0 0 0 0 1 USP9X chrX:41089080 5'GT 41089080 Upstream 40bp
chrX 41089041 41089041 1 + A G STAD 41089043 + 41089023 41089063 41 TCCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAG TCCAGAGGAGGTAAAAAAGGCCACCAGTGTGCAGCAGATAG < 41bp 1 0.0434239766931747 1 0.181370079517365 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089043 chrX:41089041 synonymous SNV . 0 19 hm5C_associated_SNPs_37813 0 0 0 0 1 USP9X chrX:41089080 5'GT 41089080 Upstream 40bp
chrX 41089041 41089041 1 + A G STAD 41089044 + 41089024 41089064 41 CCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAGA CCAGAGGAGGTAAAAAAGGCCACCAGTGTGCAGCAGATAGA < 41bp 1 0.427387701796017 1 0.193246901035309 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089044 chrX:41089041 synonymous SNV . 0 18 hm5C_associated_SNPs_37814 0 0 0 0 1 USP9X chrX:41089080 5'GT 41089080 Upstream 40bp
chrX 41089041 41089041 1 + A G STAD 41089046 + 41089026 41089066 41 AGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAGAAA AGAGGAGGTAAAAAAGGCCACCAGTGTGCAGCAGATAGAAA < 41bp 1 0.059269396715125 1 0.0583381056785583 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089046 chrX:41089041 synonymous SNV . 0 16 hm5C_associated_SNPs_37815 0 0 0 0 1 USP9X chrX:41089080 5'GT 41089080 Upstream 40bp
chrX 41089041 41089041 1 + A G STAD 41089047 + 41089027 41089067 41 GAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAGAAAT GAGGAGGTAAAAAAGGCCACCAGTGTGCAGCAGATAGAAAT < 41bp 1 0.109739060348811 1 0.109059423208237 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089047 chrX:41089041 synonymous SNV . 0 15 hm5C_associated_SNPs_37816 0 0 0 0 1 USP9X chrX:41089080 5'GT 41089080 Upstream 40bp
chr12 101520836 101520836 1 + C T STAD 101520850 + 101520830 101520870 41 CCACAACGAGTGGCCGTGACCATGTAGGTGAGAGGTGTGCT CCACAATGAGTGGCCGTGACCATGTAGGTGAGAGGTGTGCT < 41bp 1 0.418424681803085 1 0.291426539421082 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANO4 ENSG00000151572 CDS Human protein_coding chr12:101520850 chr12:101520836 synonymous SNV . 0 7 hm5C_associated_SNPs_37819 0 0 0 0 2 ANO4 chr12:101520852 5'GT 101520852 Upstream 17bp
chr12 101520836 101520836 1 + C T STAD 101520850 + 101520830 101520870 41 CCACAACGAGTGGCCGTGACCATGTAGGTGAGAGGTGTGCT CCACAATGAGTGGCCGTGACCATGTAGGTGAGAGGTGTGCT < 41bp 1 0.418424681803085 1 0.291426539421082 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANO4 ENSG00000151572 CDS Human protein_coding chr12:101520850 chr12:101520836 synonymous SNV . 0 7 hm5C_associated_SNPs_37819 0 0 0 0 2 ANO4 chr12:101520856 5'GT 101520856 Upstream 21bp
chr1 223943271 223943271 1 + G A STAD 223943279 + 223943259 223943299 41 TGCACCTTCCTGGTGGGGCTCATTCAGAAGCACCGACGGCG TGCACCTTCCTGATGGGGCTCATTCAGAAGCACCGACGGCG < 41bp 1 0.0521177731039747 1 0.0619589388370514 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943279 chr1:223943271 nonsynonymous SNV 0.999 5 13 hm5C_associated_SNPs_37820 0 0 1 0 2 CAPN2 chr1:223943182 3'AG 223943182 Downstream 90bp
chr1 223943271 223943271 1 + G A STAD 223943279 + 223943259 223943299 41 TGCACCTTCCTGGTGGGGCTCATTCAGAAGCACCGACGGCG TGCACCTTCCTGATGGGGCTCATTCAGAAGCACCGACGGCG < 41bp 1 0.0521177731039747 1 0.0619589388370514 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943279 chr1:223943271 nonsynonymous SNV 0.999 5 13 hm5C_associated_SNPs_37820 0 0 1 0 2 CAPN2 chr1:223943351 5'GT 223943351 Upstream 81bp
chr17 4685809 4685809 1 + G A STAD 4685815 + 4685795 4685835 41 CAGATGCTGCGCTCGGTCTTCTCCTCGGCGTTCGGGGTGCT CAGATGCTGCGCTCAGTCTTCTCCTCGGCGTTCGGGGTGCT < 41bp 1 0.411580577282588 1 0.275240063667297 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TM4SF5 ENSG00000142484 CDS Human protein_coding chr17:4685815 chr17:4685809 synonymous SNV . 0 15 hm5C_associated_SNPs_37821 0 0 0 0 1 TM4SF5 chr17:4685798 3'AG 4685798 Downstream 12bp
chr17 55083545 55083545 1 + C T STAD 55083541 + 55083521 55083561 41 TGTTTTTTTCTAGGTTCCTTCTGACCAAGGGGACATGGCTC TGTTTTTTTCTAGGTTCCTTCTGATCAAGGGGACATGGCTC < 41bp 1 0.363265322908305 1 0.401621013879776 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55083541 chr17:55083545 synonymous SNV . 0 25 hm5C_associated_SNPs_37822 0 0 1 0 1 SCPEP1 chr17:55083534 3'AG 55083534 Downstream 12bp
chr22 24573539 24573539 1 + C A STAD 24573545 + 24573525 24573565 41 AGTGAGACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAG AGTGAGACTCAGCCACTGAGCTCTCCCCCAACAGCTGCCAG < 41bp 1 0.0899451025822109 1 0.368160486221313 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573545 chr22:24573539 synonymous SNV . 0 15 hm5C_associated_SNPs_37823 0 0 1 0 1 CABIN1 chr22:24573472 3'AG 24573472 Downstream 68bp
chr22 24573539 24573539 1 + C A STAD 24573547 + 24573527 24573567 41 TGAGACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCT TGAGACTCAGCCACTGAGCTCTCCCCCAACAGCTGCCAGCT < 41bp 1 0.112151135191555 1 0.204703629016876 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573547 chr22:24573539 synonymous SNV . 0 13 hm5C_associated_SNPs_37824 0 0 1 0 1 CABIN1 chr22:24573472 3'AG 24573472 Downstream 68bp
chr22 24573539 24573539 1 + C A STAD 24573549 + 24573529 24573569 41 AGACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCC AGACTCAGCCACTGAGCTCTCCCCCAACAGCTGCCAGCTCC < 41bp 1 0.151581801947864 1 0.648534417152405 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573549 chr22:24573539 synonymous SNV . 0 11 hm5C_associated_SNPs_37825 0 0 1 0 1 CABIN1 chr22:24573472 3'AG 24573472 Downstream 68bp
chr22 24573539 24573539 1 + C A STAD 24573550 + 24573530 24573570 41 GACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCCA GACTCAGCCACTGAGCTCTCCCCCAACAGCTGCCAGCTCCA < 41bp 1 0.177631419395093 1 0.215960502624512 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573550 chr22:24573539 synonymous SNV . 0 10 hm5C_associated_SNPs_37826 0 0 1 0 1 CABIN1 chr22:24573472 3'AG 24573472 Downstream 68bp
chr22 24573539 24573539 1 + C A STAD 24573551 + 24573531 24573571 41 ACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCCAA ACTCAGCCACTGAGCTCTCCCCCAACAGCTGCCAGCTCCAA < 41bp 1 0.248607049609446 1 0.352208018302917 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573551 chr22:24573539 synonymous SNV . 0 9 hm5C_associated_SNPs_37827 0 0 1 0 1 CABIN1 chr22:24573472 3'AG 24573472 Downstream 68bp
chr3 32493946 32493946 1 + G A STAD 32493943 + 32493923 32493963 41 ATATGGCTGTCCTATAAGATCTCGTGTGTAACCCAGTCCAC ATATGGCTGTCCTATAAGATCTCATGTGTAACCCAGTCCAC < 41bp 1 0.567444555556415 1 0.0682444870471954 experiment 0.865110888887169 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32493943 chr3:32493946 synonymous SNV . 0 24 hm5C_associated_SNPs_37828 0 0 1 0 2 CMTM7 chr3:32493884 3'AG 32493884 Downstream 63bp
chr3 32493946 32493946 1 + G A STAD 32493943 + 32493923 32493963 41 ATATGGCTGTCCTATAAGATCTCGTGTGTAACCCAGTCCAC ATATGGCTGTCCTATAAGATCTCATGTGTAACCCAGTCCAC < 41bp 1 0.567444555556415 1 0.0682444870471954 experiment 0.865110888887169 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32493943 chr3:32493946 synonymous SNV . 0 24 hm5C_associated_SNPs_37828 0 0 1 0 2 CMTM7 chr3:32493965 5'GT 32493965 Upstream 20bp
chr3 4856237 4856237 1 + G A STAD 4856235 + 4856215 4856255 41 TAGGAGATGTACTCAGGAAGCCGTCCAAAGAGGTAAATTAA TAGGAGATGTACTCAGGAAGCCATCCAAAGAGGTAAATTAA < 41bp 1 0.0252146795963585 1 0.37159189581871 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4856235 chr3:4856237 synonymous SNV . 0 23 hm5C_associated_SNPs_37831 0 0 1 0 1 ITPR1 chr3:4856246 5'GT 4856246 Upstream 10bp
chr1 26883502 26883502 1 + G A STAD 26883509 + 26883489 26883529 41 AAGCTATACCGTCGTGAGATCAAGCCACCCTTCAAGCCAGC AAGCTATACCGTCATGAGATCAAGCCACCCTTCAAGCCAGC < 41bp 1 0.203969207097739 1 0.414716452360153 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26883509 chr1:26883502 nonsynonymous SNV 0.993 3 14 hm5C_associated_SNPs_37832 0 0 1 0 1 RPS6KA1 chr1:26883489 3'AG 26883489 Downstream 14bp
chr17 4856581 4856581 1 + G A STAD 4856570 + 4856550 4856590 41 CAAACTCACCCTTCCAGAAACTAAGCGTTGTGGATCAAGAA CAAACTCACCCTTCCAGAAACTAAGCGTTGTAGATCAAGAA < 41bp 1 0.151317528222293 1 0.219303041696548 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4856570 chr17:4856581 synonymous SNV . 0 32 hm5C_associated_SNPs_37835 0 0 1 0 1 ENO3 chr17:4856567 3'AG 4856567 Downstream 15bp
chr8 1806214 1806214 1 + G T STAD 1806226 + 1806206 1806246 41 CCAGAAGCGGACAGACAGGCCCCATCCGCCCCTGAGACAGG CCAGAAGCTGACAGACAGGCCCCATCCGCCCCTGAGACAGG < 41bp 1 0.0830537865016616 1 0.0703998506069183 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1806226 chr8:1806214 synonymous SNV . 0 9 hm5C_associated_SNPs_37836 0 0 1 0 2 ARHGEF10 chr8:1806126 3'AG 1806126 Downstream 89bp
chr8 1806214 1806214 1 + G T STAD 1806226 + 1806206 1806246 41 CCAGAAGCGGACAGACAGGCCCCATCCGCCCCTGAGACAGG CCAGAAGCTGACAGACAGGCCCCATCCGCCCCTGAGACAGG < 41bp 1 0.0830537865016616 1 0.0703998506069183 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1806226 chr8:1806214 synonymous SNV . 0 9 hm5C_associated_SNPs_37836 0 0 1 0 2 ARHGEF10 chr8:1806281 5'GT 1806281 Upstream 68bp
chr17 40936583 40936583 1 + C T STAD 40936572 + 40936552 40936592 41 CTCCGAGTGCCAGAATGCCGCGCAAATCTACCGCAAGGTCA CTCCGAGTGCCAGAATGCCGCGCAAATCTACTGCAAGGTCA < 41bp 1 0.660253565955794 1 0.152341693639755 experiment 0.679492868088413 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WNK4 ENSG00000126562 CDS Human protein_coding chr17:40936572 chr17:40936583 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_37837 0 0 0 0 1 WNK4 chr17:40936597 5'GT 40936597 Upstream 15bp
chr19 6742993 6742993 1 + G T STAD 6743009 + 6742989 6743029 41 AACAGTCCTTCGTACAGATTCTCCAGGAGGTGAATGACTTT AACATTCCTTCGTACAGATTCTCCAGGAGGTGAATGACTTT < 41bp 1 0.702704473646984 1 0.794871211051941 experiment 0.594591052706033 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6743009 chr19:6742993 nonsynonymous SNV 0.820 1 5 hm5C_associated_SNPs_37839 0 0 1 0 1 TRIP10 chr19:6742978 3'AG 6742978 Downstream 16bp
chr9 131356530 131356530 1 + C T STAD 131356537 + 131356517 131356557 41 GTTTATGTTGTTCCGTGAAGCGAATGAACTACAGCAATGGA GTTTATGTTGTTCTGTGAAGCGAATGAACTACAGCAATGGA < 41bp 1 0.114148164225035 1 0.457136631011963 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131356537 chr9:131356530 nonsynonymous SNV 0.879 4 14 hm5C_associated_SNPs_37840 0 0 1 0 1 SPTAN1 chr9:131356454 3'AG 131356454 Downstream 77bp
chr19 52714705 52714705 1 + T A STAD 52714692 + 52714672 52714712 41 CGCACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCG CGCACCTCGGCCTGCGGCCTCTTCTCCGTCTGCAACCCCCG < 41bp 1 0.415003938041549 1 0.0435898900032043 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52714692 chr19:52714705 nonsynonymous SNV 0.994 4 34 hm5C_associated_SNPs_37843 0 0 1 0 1 PPP2R1A chr19:52714745 5'GT 52714745 Upstream 41bp
chr19 52714705 52714705 1 + T A STAD 52714695 + 52714675 52714715 41 ACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCGAGT ACCTCGGCCTGCGGCCTCTTCTCCGTCTGCAACCCCCGAGT < 41bp 1 0.78532217725382 1 0.860627055168152 experiment 0.429355645492361 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52714695 chr19:52714705 nonsynonymous SNV 0.994 4 31 hm5C_associated_SNPs_37844 0 0 1 0 1 PPP2R1A chr19:52714745 5'GT 52714745 Upstream 41bp
chr15 22999351 22999351 1 + G A STAD 22999347 + 22999327 22999367 41 TCCTTTCTGCAGCAAATTGCCATCGCAAGAGAGGGGGACCT TCCTTTCTGCAGCAAATTGCCATCACAAGAGAGGGGGACCT < 41bp 1 0.438792181033445 1 0.493313372135162 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22999347 chr15:22999351 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_37845 0 0 1 0 1 CYFIP1 chr15:22999339 3'AG 22999339 Downstream 13bp
chr10 70723160 70723160 1 + G A STAD 70723167 + 70723147 70723187 41 GACATTCTCCTTTGCCATCCCTTTGATTGAGAAACTTCATG GACATTCTCCTTTACCATCCCTTTGATTGAGAAACTTCATG < 41bp 1 0.116523048214265 1 0.0421755611896515 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX21 ENSG00000165732 CDS Human protein_coding chr10:70723167 chr10:70723160 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_37846 0 0 1 0 1 DDX21 chr10:70723225 5'GT 70723225 Upstream 66bp
chr9 137593103 137593103 1 + G A STAD 137593086 + 137593066 137593106 41 CTCGACTGTAAAAAGAAGACCACCAAATTCCTCGACCGCAG CTCGACTGTAAAAAGAAGACCACCAAATTCCTCGACCACAG < 41bp 1 0.333809276793042 1 0.110694974660873 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137593086 chr9:137593103 nonsynonymous SNV 0.470 3 38 hm5C_associated_SNPs_37848 0 0 0 0 2 COL5A1 chr9:137593017 3'AG 137593017 Downstream 87bp
chr9 137593103 137593103 1 + G A STAD 137593086 + 137593066 137593106 41 CTCGACTGTAAAAAGAAGACCACCAAATTCCTCGACCGCAG CTCGACTGTAAAAAGAAGACCACCAAATTCCTCGACCACAG < 41bp 1 0.333809276793042 1 0.110694974660873 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137593086 chr9:137593103 nonsynonymous SNV 0.470 3 38 hm5C_associated_SNPs_37848 0 0 0 0 2 COL5A1 chr9:137593179 5'GT 137593179 Upstream 77bp
chr8 99168334 99168334 1 + G A STAD 99168348 + 99168328 99168368 41 CTTTCTGCTGTCCCTGGGAGCAGTTAACTCAAGACTGGGAG CTTTCTACTGTCCCTGGGAGCAGTTAACTCAAGACTGGGAG < 41bp 1 0.22198666260884 1 0.404122918844223 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POP1 ENSG00000104356 CDS Human protein_coding chr8:99168348 chr8:99168334 nonsynonymous SNV 0.994 0 7 hm5C_associated_SNPs_37849 0 0 1 0 1 POP1 chr8:99168278 3'AG 99168278 Downstream 57bp
chr19 40718828 40718828 1 + C T STAD 40718840 + 40718820 40718860 41 AGAAGGGACGAACGTGGGGGCCCAGCTCCACCCTGCAGAAG AGAAGGGATGAACGTGGGGGCCCAGCTCCACCCTGCAGAAG < 41bp 1 0.0918399979447835 1 0.142009139060974 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718840 chr19:40718828 stopgain 0.548 1 9 hm5C_associated_SNPs_37850 0 0 1 0 1 MAP3K10 chr19:40718883 5'GT 40718883 Upstream 56bp
chr19 40718828 40718828 1 + C T STAD 40718841 + 40718821 40718861 41 GAAGGGACGAACGTGGGGGCCCAGCTCCACCCTGCAGAAGG GAAGGGATGAACGTGGGGGCCCAGCTCCACCCTGCAGAAGG < 41bp 1 0.0872102238017462 1 0.0862520337104797 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718841 chr19:40718828 stopgain 0.548 1 8 hm5C_associated_SNPs_37851 0 0 1 0 1 MAP3K10 chr19:40718883 5'GT 40718883 Upstream 56bp
chr19 40718828 40718828 1 + C T STAD 40718842 + 40718822 40718862 41 AAGGGACGAACGTGGGGGCCCAGCTCCACCCTGCAGAAGGA AAGGGATGAACGTGGGGGCCCAGCTCCACCCTGCAGAAGGA < 41bp 1 0.158477595975226 1 0.248277962207794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718842 chr19:40718828 stopgain 0.548 1 7 hm5C_associated_SNPs_37852 0 0 1 0 1 MAP3K10 chr19:40718883 5'GT 40718883 Upstream 56bp
chr16 1818260 1818260 1 + A G STAD 1818253 + 1818233 1818273 41 CCCGTCCCGGGGGCATCATCCACGTGTATGGCGATGACAGC CCCGTCCCGGGGGCATCATCCACGTGTGTGGCGATGACAGC < 41bp 1 0.555501781318585 1 0.80134642124176 experiment 0.888996437362829 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1818253 chr16:1818260 nonsynonymous SNV 0.295 4 28 hm5C_associated_SNPs_37859 0 0 0 0 1 MAPK8IP3 chr16:1818200 3'AG 1818200 Downstream 61bp
chr12 31244687 31244687 1 + C T STAD 31244691 + 31244671 31244711 41 CAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGGGCAT CAGATGCTGCTGCATGTGGCCACTCGGCAGGCCGCGGGCAT < 41bp 1 0.292983530275172 1 0.0548415184020996 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244691 chr12:31244687 nonsynonymous SNV 0.253 0 17 hm5C_associated_SNPs_37860 0 0 1 0 1 DDX11 chr12:31244653 3'AG 31244653 Downstream 35bp
chr22 41923392 41923392 1 + C T STAD 41923388 + 41923368 41923408 41 AGCCTCGCCACCTTGGGGGCCGGGCCATCATCACCAAGAGC AGCCTCGCCACCTTGGGGGCCGGGTCATCATCACCAAGAGC < 41bp 1 0.325830485541647 1 0.486003339290619 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41923388 chr22:41923392 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_37862 0 0 1 0 1 ACO2 chr22:41923424 5'GT 41923424 Upstream 33bp
chr19 46887108 46887108 1 + C T STAD 46887105 + 46887085 46887125 41 CTCCTCAACATATTCGAGCTCAACGGTTTACCCTCGGAGAC CTCCTCAACATATTCGAGCTCAATGGTTTACCCTCGGAGAC < 41bp 1 0.378362163511455 1 0.160255581140518 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46887105 chr19:46887108 synonymous SNV . 0 24 hm5C_associated_SNPs_37863 0 0 1 0 3 PPP5C chr19:46887037 3'AG 46887037 Downstream 72bp
chr19 46887108 46887108 1 + C T STAD 46887105 + 46887085 46887125 41 CTCCTCAACATATTCGAGCTCAACGGTTTACCCTCGGAGAC CTCCTCAACATATTCGAGCTCAATGGTTTACCCTCGGAGAC < 41bp 1 0.378362163511455 1 0.160255581140518 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46887105 chr19:46887108 synonymous SNV . 0 24 hm5C_associated_SNPs_37863 0 0 1 0 3 PPP5C chr19:46887041 3'AG 46887041 Downstream 68bp
chr19 46887108 46887108 1 + C T STAD 46887105 + 46887085 46887125 41 CTCCTCAACATATTCGAGCTCAACGGTTTACCCTCGGAGAC CTCCTCAACATATTCGAGCTCAATGGTTTACCCTCGGAGAC < 41bp 1 0.378362163511455 1 0.160255581140518 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46887105 chr19:46887108 synonymous SNV . 0 24 hm5C_associated_SNPs_37863 0 0 1 0 3 PPP5C chr19:46887135 5'GT 46887135 Upstream 28bp
chr8 142176445 142176445 1 + G A STAD 142176432 + 142176412 142176452 41 TGCCATGCCTGAGCTGGCACCCAGGAACTCCTCGCTCCGGC TGCCATGCCTGAGCTGGCACCCAGGAACTCCTCACTCCGGC < 41bp 1 0.43129710970661 1 0.879295468330383 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DENND3 ENSG00000105339 CDS Human protein_coding chr8:142176432 chr8:142176445 synonymous SNV . 0 34 hm5C_associated_SNPs_37864 0 0 0 0 1 DENND3 chr8:142176488 5'GT 142176488 Upstream 44bp
chr1 36028833 36028833 1 + C T STAD 36028846 + 36028826 36028866 41 ACCTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAG ACCTGACTGTTGAAGATGGGCCCCGGGAGATCCTGATCAAG < 41bp 1 0.301184831097097 1 0.060050368309021 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028846 chr1:36028833 synonymous SNV . 0 8 hm5C_associated_SNPs_37874 0 0 1 0 1 NCDN chr1:36028803 3'AG 36028803 Downstream 31bp
chr1 36028833 36028833 1 + C T STAD 36028847 + 36028827 36028867 41 CCTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAGG CCTGACTGTTGAAGATGGGCCCCGGGAGATCCTGATCAAGG < 41bp 1 0.318852135789213 1 0.238275438547134 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028847 chr1:36028833 synonymous SNV . 0 7 hm5C_associated_SNPs_37875 0 0 1 0 1 NCDN chr1:36028803 3'AG 36028803 Downstream 31bp
chr1 36028833 36028833 1 + C T STAD 36028848 + 36028828 36028868 41 CTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAGGA CTGACTGTTGAAGATGGGCCCCGGGAGATCCTGATCAAGGA < 41bp 1 0.461533368096443 1 0.426038295030594 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028848 chr1:36028833 synonymous SNV . 0 6 hm5C_associated_SNPs_37876 0 0 1 0 1 NCDN chr1:36028803 3'AG 36028803 Downstream 31bp
chr2 219609922 219609922 1 + C T STAD 219609940 + 219609920 219609960 41 CCCCCTACCATCTATTTTGGCACTCGGGATGAGAGAGGTAA CCTCCTACCATCTATTTTGGCACTCGGGATGAGAGAGGTAA < 41bp 1 0.136628828381836 1 0.0878056883811951 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219609940 chr2:219609922 synonymous SNV . 0 3 hm5C_associated_SNPs_37877 0 0 1 0 2 TTLL4 chr2:219609832 3'AG 219609832 Downstream 91bp
chr2 219609922 219609922 1 + C T STAD 219609940 + 219609920 219609960 41 CCCCCTACCATCTATTTTGGCACTCGGGATGAGAGAGGTAA CCTCCTACCATCTATTTTGGCACTCGGGATGAGAGAGGTAA < 41bp 1 0.136628828381836 1 0.0878056883811951 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219609940 chr2:219609922 synonymous SNV . 0 3 hm5C_associated_SNPs_37877 0 0 1 0 2 TTLL4 chr2:219609956 5'GT 219609956 Upstream 35bp
chr2 219609922 219609922 1 + C T STAD 219609942 + 219609922 219609962 41 CCCTACCATCTATTTTGGCACTCGGGATGAGAGAGGTAAAC TCCTACCATCTATTTTGGCACTCGGGATGAGAGAGGTAAAC < 41bp 1 0.564405771100169 1 0.123150795698166 experiment 0.871188457799661 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219609942 chr2:219609922 synonymous SNV . 0 1 hm5C_associated_SNPs_37878 0 0 1 0 2 TTLL4 chr2:219609832 3'AG 219609832 Downstream 91bp
chr2 219609922 219609922 1 + C T STAD 219609942 + 219609922 219609962 41 CCCTACCATCTATTTTGGCACTCGGGATGAGAGAGGTAAAC TCCTACCATCTATTTTGGCACTCGGGATGAGAGAGGTAAAC < 41bp 1 0.564405771100169 1 0.123150795698166 experiment 0.871188457799661 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219609942 chr2:219609922 synonymous SNV . 0 1 hm5C_associated_SNPs_37878 0 0 1 0 2 TTLL4 chr2:219609956 5'GT 219609956 Upstream 35bp
chr10 45486417 45486417 1 + G T STAD 45486398 + 45486378 45486418 41 AACCACCTTCTTTTTCAGAGCGGACAAAATTAAAAGACTGC AACCACCTTCTTTTTCAGAGCGGACAAAATTAAAAGACTTC < 41bp 1 0.0710740261296423 1 0.308285415172577 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45486398 chr10:45486417 nonsynonymous SNV 0.997 1 40 hm5C_associated_SNPs_37879 0 0 1 0 1 RASSF4 chr10:45486396 3'AG 45486396 Downstream 22bp
chr5 6652020 6652020 1 + C T STAD 6652008 + 6651988 6652028 41 AAAGCCTATGCCACTGTTGGCGTGTACAATGGCGATTATGT AAAGCCTATGCCACTGTTGGCGTGTACAATGGTGATTATGT < 41bp 1 0.13419690372447 1 0.221647143363953 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6652008 chr5:6652020 nonsynonymous SNV 0.001 4 33 hm5C_associated_SNPs_37880 0 0 0 0 1 SRD5A1 chr5:6651955 3'AG 6651955 Downstream 66bp
chr1 116937732 116937732 1 + G T STAD 116937743 + 116937723 116937763 41 TCCTCGCAGGTTTCTGCCACCTCTTTCTGCCAGATGAACAG TCCTCGCAGTTTTCTGCCACCTCTTTCTGCCAGATGAACAG < 41bp 1 0.165917544246089 1 0.115855276584625 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116937743 chr1:116937732 nonsynonymous SNV 0.989 5 10 hm5C_associated_SNPs_37883 0 0 1 0 1 ATP1A1 chr1:116937732 3'AG 116937732 Downstream 1bp
chr19 45797635 45797635 1 + G A STAD 45797648 + 45797628 45797668 41 ATGACCCGCAGAAACACCTACGTTTGCACAGAACGCCCGGG ATGACCCACAGAAACACCTACGTTTGCACAGAACGCCCGGG < 41bp 1 0.0429834708602203 1 0.0584037005901337 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45797648 chr19:45797635 nonsynonymous SNV 0.999 4 8 hm5C_associated_SNPs_37885 0 0 1 0 2 MARK4 chr19:45797607 3'AG 45797607 Downstream 29bp
chr19 45797635 45797635 1 + G A STAD 45797648 + 45797628 45797668 41 ATGACCCGCAGAAACACCTACGTTTGCACAGAACGCCCGGG ATGACCCACAGAAACACCTACGTTTGCACAGAACGCCCGGG < 41bp 1 0.0429834708602203 1 0.0584037005901337 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45797648 chr19:45797635 nonsynonymous SNV 0.999 4 8 hm5C_associated_SNPs_37885 0 0 1 0 2 MARK4 chr19:45797710 5'GT 45797710 Upstream 76bp
chr2 109367742 109367742 1 + T C STAD 109367752 + 109367732 109367772 41 CACATAATGGTAGTCTTCAGCACCTTACTTGGCTTGGCTTA CACATAATGGCAGTCTTCAGCACCTTACTTGGCTTGGCTTA < 41bp 1 0.306409127046486 1 0.31192934513092 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109367752 chr2:109367742 synonymous SNV . 0 11 hm5C_associated_SNPs_37890 0 0 0 0 1 RANBP2 chr2:109367720 3'AG 109367720 Downstream 23bp
chr8 145736269 145736269 1 + G C STAD 145736271 + 145736251 145736291 41 ATGCGCTGCAGCCAGCTGGCCCCCAGGGCCCTGCAGGTGAG ATGCGCTGCAGCCAGCTGCCCCCCAGGGCCCTGCAGGTGAG < 41bp 1 0.431739060822495 1 0.302342414855957 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145736271 chr8:145736269 nonsynonymous SNV 0.986 4 19 hm5C_associated_SNPs_37891 0 0 1 0 1 MFSD3 chr8:145736286 5'GT 145736286 Upstream 18bp
chr6 44116537 44116537 1 + T G STAD 44116536 + 44116516 44116556 41 CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTCATC CCCACCTTGCCAGGGAGCACCGCTCCATCCGAGGCTTCATC < 41bp 1 0.119766578787391 1 0.753270506858826 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116536 chr6:44116537 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_37892 0 0 1 0 1 TMEM63B chr6:44116529 3'AG 44116529 Downstream 9bp
chr10 75548519 75548519 1 + G A STAD 75548529 + 75548509 75548549 41 ACCCACCAGTGCCTGAGCAGCTACAGCTCCGAATTGCTTTT ACCCACCAGTACCTGAGCAGCTACAGCTCCGAATTGCTTTT < 41bp 1 0.574914522600119 1 0.405554354190826 experiment 0.850170954799763 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75548529 chr10:75548519 synonymous SNV . 0 11 hm5C_associated_SNPs_37893 0 0 0 0 2 ZSWIM8 chr10:75548428 3'AG 75548428 Downstream 92bp
chr10 75548519 75548519 1 + G A STAD 75548529 + 75548509 75548549 41 ACCCACCAGTGCCTGAGCAGCTACAGCTCCGAATTGCTTTT ACCCACCAGTACCTGAGCAGCTACAGCTCCGAATTGCTTTT < 41bp 1 0.574914522600119 1 0.405554354190826 experiment 0.850170954799763 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75548529 chr10:75548519 synonymous SNV . 0 11 hm5C_associated_SNPs_37893 0 0 0 0 2 ZSWIM8 chr10:75548581 5'GT 75548581 Upstream 63bp
chr11 33667279 33667279 1 + G A STAD 33667280 + 33667260 33667300 41 ACATTGACAGAGTTCCTGAGCCCCGGGGCTATTCCAGGTCT ACATTGACAGAGTTCCTGAACCCCGGGGCTATTCCAGGTCT < 41bp 1 0.305327860219839 1 0.0921890437602997 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33667280 chr11:33667279 synonymous SNV . 0 20 hm5C_associated_SNPs_37895 0 0 0 0 1 KIAA1549L chr11:33667232 3'AG 33667232 Downstream 48bp
chr13 94679997 94679997 1 + A T STAD 94679996 + 94679976 94680016 41 TCTGCAGGTCAGCCCAACCCCAGGGTGTATCCGTGCCCTCA TCTGCAGGTCAGCCCAACCCCTGGGTGTATCCGTGCCCTCA < 41bp 1 0.690219121390371 1 0.480822652578354 experiment 0.619561757219258 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPC6 ENSG00000183098 CDS Human protein_coding chr13:94679996 chr13:94679997 synonymous SNV . 0 22 hm5C_associated_SNPs_37896 0 0 1 0 1 GPC6 chr13:94679983 3'AG 94679983 Downstream 15bp
chr19 13004403 13004403 1 + C T STAD 13004401 + 13004381 13004421 41 CGATGAGTGTCCAGTCCTCCCTCGTCATGCACCCTATCTAT CGATGAGTGTCCAGTCCTCCCTTGTCATGCACCCTATCTAT < 41bp 1 0.585546976365148 1 0.0280571281909943 experiment 0.828906047269704 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13004401 chr19:13004403 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_37897 0 0 1 0 1 GCDH chr19:13004467 5'GT 13004467 Upstream 65bp
chr16 28844195 28844195 1 + G A STAD 28844200 + 28844180 28844220 41 AACTGAGAAAGTTTGGGGCCCAGTTTAAGGTGAGAGAAGAG AACTGAGAAAGTTTGAGGCCCAGTTTAAGGTGAGAGAAGAG < 41bp 1 0.0666935587221095 1 0.251767992973328 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28844200 chr16:28844195 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_37909 0 0 1 0 2 ATXN2L chr16:28844138 3'AG 28844138 Downstream 58bp
chr16 28844195 28844195 1 + G A STAD 28844200 + 28844180 28844220 41 AACTGAGAAAGTTTGGGGCCCAGTTTAAGGTGAGAGAAGAG AACTGAGAAAGTTTGAGGCCCAGTTTAAGGTGAGAGAAGAG < 41bp 1 0.0666935587221095 1 0.251767992973328 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28844200 chr16:28844195 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_37909 0 0 1 0 2 ATXN2L chr16:28844208 5'GT 28844208 Upstream 14bp
chr1 229770731 229770731 1 + G A STAD 229770748 + 229770728 229770768 41 TTCGATGTTGCCAGGGCATCCTGTCGACACCTGCCCTGGCT TTCAATGTTGCCAGGGCATCCTGTCGACACCTGCCCTGGCT < 41bp 1 0.419655827519867 1 0.609300434589386 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control URB2 ENSG00000135763 CDS Human protein_coding chr1:229770748 chr1:229770731 nonsynonymous SNV 0.897 1 4 hm5C_associated_SNPs_37912 0 0 1 0 1 URB2 chr1:229770664 3'AG 229770664 Downstream 68bp
chr1 228468282 228468282 1 + G A STAD 228468289 + 228468269 228468309 41 TCCGCAGAGGAGCGCGGCACCCTGGCCCTGCAGTGTGAAGT TCCGCAGAGGAGCACGGCACCCTGGCCCTGCAGTGTGAAGT < 41bp 1 0.0461444708169927 1 0.0487765371799469 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228468289 chr1:228468282 nonsynonymous SNV 0.000 0 14 hm5C_associated_SNPs_37916 0 0 0 0 1 OBSCN chr1:228468231 3'AG 228468231 Downstream 52bp
chr14 58669640 58669640 1 + C T STAD 58669641 + 58669621 58669661 41 GATAAAAAGAGCTGGGATGCCTAAGGTATTTAAAAAAAAAT GATAAAAAGAGCTGGGATGTCTAAGGTATTTAAAAAAAAAT < 41bp 1 0.461913787704358 1 0.709139585494995 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACTR10 ENSG00000131966 CDS Human protein_coding chr14:58669641 chr14:58669640 nonsynonymous SNV 0.933 1 20 hm5C_associated_SNPs_37917 0 0 1 0 2 ACTR10 chr14:58669573 3'AG 58669573 Downstream 68bp
chr14 58669640 58669640 1 + C T STAD 58669641 + 58669621 58669661 41 GATAAAAAGAGCTGGGATGCCTAAGGTATTTAAAAAAAAAT GATAAAAAGAGCTGGGATGTCTAAGGTATTTAAAAAAAAAT < 41bp 1 0.461913787704358 1 0.709139585494995 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACTR10 ENSG00000131966 CDS Human protein_coding chr14:58669641 chr14:58669640 nonsynonymous SNV 0.933 1 20 hm5C_associated_SNPs_37917 0 0 1 0 2 ACTR10 chr14:58669645 5'GT 58669645 Upstream 6bp
chr22 22025326 22025326 1 + G A STAD 22025316 + 22025296 22025336 41 CAGCCCTTTGTCTACCCAGTCTGCACTCCCGATGGCATCGT CAGCCCTTTGTCTACCCAGTCTGCACTCCCAATGGCATCGT < 41bp 1 0.577388890612934 1 0.358881682157516 experiment 0.845222218774132 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22025316 chr22:22025326 nonsynonymous SNV 0.493 1 31 hm5C_associated_SNPs_37919 0 0 1 0 2 PPIL2 chr22:22025286 3'AG 22025286 Downstream 41bp
chr22 22025326 22025326 1 + G A STAD 22025316 + 22025296 22025336 41 CAGCCCTTTGTCTACCCAGTCTGCACTCCCGATGGCATCGT CAGCCCTTTGTCTACCCAGTCTGCACTCCCAATGGCATCGT < 41bp 1 0.577388890612934 1 0.358881682157516 experiment 0.845222218774132 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22025316 chr22:22025326 nonsynonymous SNV 0.493 1 31 hm5C_associated_SNPs_37919 0 0 1 0 2 PPIL2 chr22:22025348 5'GT 22025348 Upstream 23bp
chr1 203819736 203819736 1 + C T STAD 203819733 + 203819713 203819753 41 TAAGGCAGTGGAGATGCACGCTGCTGTCATTGCCGCTGTGA TAAGGCAGTGGAGATGCACGCTGTTGTCATTGCCGCTGTGA < 41bp 1 0.506165466388512 1 0.147245705127716 experiment 0.987669067222975 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203819733 chr1:203819736 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_37920 0 0 1 0 2 ZC3H11A chr1:203819643 3'AG 203819643 Downstream 94bp
chr1 203819736 203819736 1 + C T STAD 203819733 + 203819713 203819753 41 TAAGGCAGTGGAGATGCACGCTGCTGTCATTGCCGCTGTGA TAAGGCAGTGGAGATGCACGCTGTTGTCATTGCCGCTGTGA < 41bp 1 0.506165466388512 1 0.147245705127716 experiment 0.987669067222975 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203819733 chr1:203819736 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_37920 0 0 1 0 2 ZC3H11A chr1:203819809 5'GT 203819809 Upstream 74bp
chr3 38287635 38287635 1 + C T STAD 38287619 + 38287599 38287639 41 CTCCAAGTTCCAGAACAGATCTCTGCTCATCTACCTCAGCC CTCCAAGTTCCAGAACAGATCTCTGCTCATCTACCTTAGCC < 41bp 1 0.416852334172717 1 0.0893209874629974 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OXSR1 ENSG00000172939 CDS Human protein_coding chr3:38287619 chr3:38287635 stopgain 1.000 0 37 hm5C_associated_SNPs_37922 0 0 1 0 2 OXSR1 chr3:38287566 3'AG 38287566 Downstream 70bp
chr3 38287635 38287635 1 + C T STAD 38287619 + 38287599 38287639 41 CTCCAAGTTCCAGAACAGATCTCTGCTCATCTACCTCAGCC CTCCAAGTTCCAGAACAGATCTCTGCTCATCTACCTTAGCC < 41bp 1 0.416852334172717 1 0.0893209874629974 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OXSR1 ENSG00000172939 CDS Human protein_coding chr3:38287619 chr3:38287635 stopgain 1.000 0 37 hm5C_associated_SNPs_37922 0 0 1 0 2 OXSR1 chr3:38287712 5'GT 38287712 Upstream 78bp
chr11 61632650 61632650 1 + A G STAD 61632668 + 61632648 61632688 41 CAACTTACACAAGATCGCCCCGCTGGTGAAGTCTCTATGTG CAGCTTACACAAGATCGCCCCGCTGGTGAAGTCTCTATGTG < 41bp 1 0.354172989229734 1 0.169890880584717 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61632668 chr11:61632650 nonsynonymous SNV 0.786 2 3 hm5C_associated_SNPs_37925 0 0 1 0 2 FADS2 chr11:61632624 3'AG 61632624 Downstream 27bp
chr11 61632650 61632650 1 + A G STAD 61632668 + 61632648 61632688 41 CAACTTACACAAGATCGCCCCGCTGGTGAAGTCTCTATGTG CAGCTTACACAAGATCGCCCCGCTGGTGAAGTCTCTATGTG < 41bp 1 0.354172989229734 1 0.169890880584717 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61632668 chr11:61632650 nonsynonymous SNV 0.786 2 3 hm5C_associated_SNPs_37925 0 0 1 0 2 FADS2 chr11:61632749 5'GT 61632749 Upstream 100bp
chr11 61632650 61632650 1 + A G STAD 61632670 + 61632650 61632690 41 ACTTACACAAGATCGCCCCGCTGGTGAAGTCTCTATGTGCC GCTTACACAAGATCGCCCCGCTGGTGAAGTCTCTATGTGCC < 41bp 1 0.566378899498093 1 0.337538242340088 experiment 0.867242201003814 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61632670 chr11:61632650 nonsynonymous SNV 0.786 2 1 hm5C_associated_SNPs_37926 0 0 1 0 2 FADS2 chr11:61632624 3'AG 61632624 Downstream 27bp
chr11 61632650 61632650 1 + A G STAD 61632670 + 61632650 61632690 41 ACTTACACAAGATCGCCCCGCTGGTGAAGTCTCTATGTGCC GCTTACACAAGATCGCCCCGCTGGTGAAGTCTCTATGTGCC < 41bp 1 0.566378899498093 1 0.337538242340088 experiment 0.867242201003814 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61632670 chr11:61632650 nonsynonymous SNV 0.786 2 1 hm5C_associated_SNPs_37926 0 0 1 0 2 FADS2 chr11:61632749 5'GT 61632749 Upstream 100bp
chr3 184042123 184042123 1 + T C STAD 184042134 + 184042114 184042154 41 AGAGATGGATGAAGCTGCTACGGTGAGAGAAAACCCACTAT AGAGATGGACGAAGCTGCTACGGTGAGAGAAAACCCACTAT < 41bp 1 0.345168445240072 1 0.491104751825333 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042134 chr3:184042123 synonymous SNV . 0 10 hm5C_associated_SNPs_37927 0 0 1 0 1 EIF4G1 chr3:184042135 5'GT 184042135 Upstream 13bp
chr19 50285901 50285901 1 + C A STAD 50285882 + 50285862 50285902 41 TGACCTGGCCAGCCGCAACCCCACCTTCATGTGCCTGGCCC TGACCTGGCCAGCCGCAACCCCACCTTCATGTGCCTGGCAC < 41bp 1 0.25478364747461 1 0.218733340501785 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50285882 chr19:50285901 synonymous SNV . 0 40 hm5C_associated_SNPs_37928 0 0 1 0 1 AP2A1 chr19:50285981 5'GT 50285981 Upstream 81bp
chr7 33014900 33014900 1 + T G STAD 33014888 + 33014868 33014908 41 GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCG GTTCAGATTCACACCTATTTCAAGCCCCCGAGGTGCCCTCG < 41bp 1 0.511740594579271 1 0.828863561153412 experiment 0.976518810841458 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014888 chr7:33014900 nonsynonymous SNV 0.955 0 33 hm5C_associated_SNPs_37929 0 0 0 0 1 FKBP9 chr7:33014983 5'GT 33014983 Upstream 84bp
chr7 33014900 33014900 1 + T G STAD 33014892 + 33014872 33014912 41 AGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCGGACC AGATTCACACCTATTTCAAGCCCCCGAGGTGCCCTCGGACC < 41bp 1 0.0950791105532655 1 0.0939432680606842 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014892 chr7:33014900 nonsynonymous SNV 0.955 0 29 hm5C_associated_SNPs_37930 0 0 0 0 1 FKBP9 chr7:33014983 5'GT 33014983 Upstream 84bp
chr4 6596387 6596387 1 + T G STAD 6596403 + 6596383 6596423 41 CTACTTCCGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG CTACGTCCGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG < 41bp 1 0.196233069535304 1 0.0292437374591827 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6596403 chr4:6596387 nonsynonymous SNV 0.844 4 5 hm5C_associated_SNPs_37933 0 0 0 0 2 MAN2B2 chr4:6596348 3'AG 6596348 Downstream 40bp
chr4 6596387 6596387 1 + T G STAD 6596403 + 6596383 6596423 41 CTACTTCCGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG CTACGTCCGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG < 41bp 1 0.196233069535304 1 0.0292437374591827 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6596403 chr4:6596387 nonsynonymous SNV 0.844 4 5 hm5C_associated_SNPs_37933 0 0 0 0 2 MAN2B2 chr4:6596459 5'GT 6596459 Upstream 73bp
chr9 107515233 107515233 1 + T C STAD 107515213 + 107515193 107515233 41 TTGCTCATCGAACTGAAGTTCGGAAAGCCTTGGCCAAAGAT TTGCTCATCGAACTGAAGTTCGGAAAGCCTTGGCCAAAGAC < 41bp 1 0.776674038453938 1 0.840743362903595 experiment 0.446651923092124 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NIPSNAP3A ENSG00000136783 CDS Human protein_coding chr9:107515213 chr9:107515233 synonymous SNV . 0 41 hm5C_associated_SNPs_37934 0 0 1 0 1 NIPSNAP3A chr9:107515187 3'AG 107515187 Downstream 47bp
chr8 1851473 1851473 1 + C T STAD 1851453 + 1851433 1851473 41 CCTGTTGCTTGTAGGACATGCTGAAGAACACCTCCAAAGGC CCTGTTGCTTGTAGGACATGCTGAAGAACACCTCCAAAGGT < 41bp 1 0.646462579355323 1 0.589993298053741 experiment 0.707074841289353 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1851453 chr8:1851473 synonymous SNV . 0 41 hm5C_associated_SNPs_37935 0 0 1 0 1 ARHGEF10 chr8:1851447 3'AG 1851447 Downstream 27bp
chr16 69353359 69353359 1 + A C STAD 69353363 + 69353343 69353383 41 AAATCCTACCTGGCCAAAGCCGTGGCAACAGAGGCCAACAA AAATCCTACCTGGCCACAGCCGTGGCAACAGAGGCCAACAA < 41bp 1 0.602566190512395 1 0.762495696544647 experiment 0.79486761897521 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS4A ENSG00000132612;ENSG00000260914 CDS Human other chr16:69353363 chr16:69353359 nonsynonymous SNV 0.990 5 17 hm5C_associated_SNPs_37936 0 0 1 0 2 VPS4A chr16:69353290 3'AG 69353290 Downstream 70bp
chr16 69353359 69353359 1 + A C STAD 69353363 + 69353343 69353383 41 AAATCCTACCTGGCCAAAGCCGTGGCAACAGAGGCCAACAA AAATCCTACCTGGCCACAGCCGTGGCAACAGAGGCCAACAA < 41bp 1 0.602566190512395 1 0.762495696544647 experiment 0.79486761897521 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS4A ENSG00000132612;ENSG00000260914 CDS Human other chr16:69353363 chr16:69353359 nonsynonymous SNV 0.990 5 17 hm5C_associated_SNPs_37936 0 0 1 0 2 VPS4A chr16:69353446 5'GT 69353446 Upstream 88bp
chr11 831623 831623 1 + C T STAD 831625 + 831605 831645 41 AAGGCTCTGACAACAGCCCGCCTGCCTGGGCCCACCTGCTG AAGGCTCTGACAACAGCCTGCCTGCCTGGGCCCACCTGCTG < 41bp 1 0.0975338776469112 1 0.0420100092887878 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:831625 chr11:831623 nonsynonymous SNV 0.002 1 19 hm5C_associated_SNPs_37937 0 0 1 1 1 CRACR2B chr11:831535 3'AG 831535 Downstream 89bp
chr12 51117073 51117073 1 + G A STAD 51117087 + 51117067 51117107 41 CCTCACGGCCACGCTGCCCACTGTCCGAATGATTGTTGATG CCTCACAGCCACGCTGCCCACTGTCCGAATGATTGTTGATG < 41bp 1 0.113707975644686 1 0.073113739490509 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51117087 chr12:51117073 synonymous SNV . 0 7 hm5C_associated_SNPs_37938 0 0 1 0 2 DIP2B chr12:51116985 3'AG 51116985 Downstream 89bp
chr12 51117073 51117073 1 + G A STAD 51117087 + 51117067 51117107 41 CCTCACGGCCACGCTGCCCACTGTCCGAATGATTGTTGATG CCTCACAGCCACGCTGCCCACTGTCCGAATGATTGTTGATG < 41bp 1 0.113707975644686 1 0.073113739490509 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51117087 chr12:51117073 synonymous SNV . 0 7 hm5C_associated_SNPs_37938 0 0 1 0 2 DIP2B chr12:51117106 5'GT 51117106 Upstream 34bp
chr3 184104636 184104636 1 + C T STAD 184104655 + 184104635 184104675 41 ACGAACGGTGATCTGTGACCCGGTGGTGTGCCCACCGCCCA ATGAACGGTGATCTGTGACCCGGTGGTGTGCCCACCGCCCA < 41bp 1 0.731800280777495 1 0.618069171905518 experiment 0.536399438445011 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CHRD ENSG00000090539 CDS Human protein_coding chr3:184104655 chr3:184104636 stopgain 0.615 1 2 hm5C_associated_SNPs_37939 0 0 1 0 2 CHRD chr3:184104633 3'AG 184104633 Downstream 4bp
chr3 184104636 184104636 1 + C T STAD 184104655 + 184104635 184104675 41 ACGAACGGTGATCTGTGACCCGGTGGTGTGCCCACCGCCCA ATGAACGGTGATCTGTGACCCGGTGGTGTGCCCACCGCCCA < 41bp 1 0.731800280777495 1 0.618069171905518 experiment 0.536399438445011 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CHRD ENSG00000090539 CDS Human protein_coding chr3:184104655 chr3:184104636 stopgain 0.615 1 2 hm5C_associated_SNPs_37939 0 0 1 0 2 CHRD chr3:184104726 5'GT 184104726 Upstream 91bp
chr19 16204371 16204371 1 + A G STAD 16204363 + 16204343 16204383 41 CAGTATTCTGAAAAGGAGGACAAATATGAAGAAGAAATTAA CAGTATTCTGAAAAGGAGGACAAATATGGAGAAGAAATTAA < 41bp 1 0.0515819729325548 1 0.210107862949371 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPM4 ENSG00000167460 CDS Human protein_coding chr19:16204363 chr19:16204371 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_37942 0 0 1 0 2 TPM4 chr19:16204346 3'AG 16204346 Downstream 26bp
chr19 16204371 16204371 1 + A G STAD 16204363 + 16204343 16204383 41 CAGTATTCTGAAAAGGAGGACAAATATGAAGAAGAAATTAA CAGTATTCTGAAAAGGAGGACAAATATGGAGAAGAAATTAA < 41bp 1 0.0515819729325548 1 0.210107862949371 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPM4 ENSG00000167460 CDS Human protein_coding chr19:16204363 chr19:16204371 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_37942 0 0 1 0 2 TPM4 chr19:16204408 5'GT 16204408 Upstream 38bp
chr13 21205209 21205209 1 + G C STAD 21205223 + 21205203 21205243 41 AGTGCAGCTGCAACCAATCTCTCAGCCCTGTATTATATGGT AGTGCACCTGCAACCAATCTCTCAGCCCTGTATTATATGGT < 41bp 1 0.30108547599207 1 0.279334843158722 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control IFT88 ENSG00000032742 CDS Human protein_coding chr13:21205223 chr13:21205209 nonsynonymous SNV 0.998 4 7 hm5C_associated_SNPs_37944 0 0 0 0 2 IFT88 chr13:21205155 3'AG 21205155 Downstream 55bp
chr13 21205209 21205209 1 + G C STAD 21205223 + 21205203 21205243 41 AGTGCAGCTGCAACCAATCTCTCAGCCCTGTATTATATGGT AGTGCACCTGCAACCAATCTCTCAGCCCTGTATTATATGGT < 41bp 1 0.30108547599207 1 0.279334843158722 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control IFT88 ENSG00000032742 CDS Human protein_coding chr13:21205223 chr13:21205209 nonsynonymous SNV 0.998 4 7 hm5C_associated_SNPs_37944 0 0 0 0 2 IFT88 chr13:21205241 5'GT 21205241 Upstream 33bp
chr11 114273598 114273598 1 + A G STAD 114273583 + 114273563 114273603 41 CCCACAAGATGTCAGTTTGTCATATCCCCAACATCATGTTG CCCACAAGATGTCAGTTTGTCATATCCCCAACATCGTGTTG < 41bp 1 0.330752647292677 1 0.133279114961624 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273583 chr11:114273598 nonsynonymous SNV 1.000 0 36 hm5C_associated_SNPs_37945 0 0 1 0 3 RBM7 chr11:114273550 3'AG 114273550 Downstream 49bp
chr11 114273598 114273598 1 + A G STAD 114273583 + 114273563 114273603 41 CCCACAAGATGTCAGTTTGTCATATCCCCAACATCATGTTG CCCACAAGATGTCAGTTTGTCATATCCCCAACATCGTGTTG < 41bp 1 0.330752647292677 1 0.133279114961624 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273583 chr11:114273598 nonsynonymous SNV 1.000 0 36 hm5C_associated_SNPs_37945 0 0 1 0 3 RBM7 chr11:114273554 3'AG 114273554 Downstream 45bp
chr11 114273598 114273598 1 + A G STAD 114273583 + 114273563 114273603 41 CCCACAAGATGTCAGTTTGTCATATCCCCAACATCATGTTG CCCACAAGATGTCAGTTTGTCATATCCCCAACATCGTGTTG < 41bp 1 0.330752647292677 1 0.133279114961624 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273583 chr11:114273598 nonsynonymous SNV 1.000 0 36 hm5C_associated_SNPs_37945 0 0 1 0 3 RBM7 chr11:114273637 5'GT 114273637 Upstream 40bp
chr11 114273598 114273598 1 + A G STAD 114273589 + 114273569 114273609 41 AGATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATT AGATGTCAGTTTGTCATATCCCCAACATCGTGTTGGAAATT < 41bp 1 0.643558483342373 1 0.188105940818787 experiment 0.712883033315254 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273589 chr11:114273598 nonsynonymous SNV 1.000 0 30 hm5C_associated_SNPs_37946 0 0 1 0 3 RBM7 chr11:114273550 3'AG 114273550 Downstream 49bp
chr11 114273598 114273598 1 + A G STAD 114273589 + 114273569 114273609 41 AGATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATT AGATGTCAGTTTGTCATATCCCCAACATCGTGTTGGAAATT < 41bp 1 0.643558483342373 1 0.188105940818787 experiment 0.712883033315254 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273589 chr11:114273598 nonsynonymous SNV 1.000 0 30 hm5C_associated_SNPs_37946 0 0 1 0 3 RBM7 chr11:114273554 3'AG 114273554 Downstream 45bp
chr11 114273598 114273598 1 + A G STAD 114273589 + 114273569 114273609 41 AGATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATT AGATGTCAGTTTGTCATATCCCCAACATCGTGTTGGAAATT < 41bp 1 0.643558483342373 1 0.188105940818787 experiment 0.712883033315254 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273589 chr11:114273598 nonsynonymous SNV 1.000 0 30 hm5C_associated_SNPs_37946 0 0 1 0 3 RBM7 chr11:114273637 5'GT 114273637 Upstream 40bp
chr11 114273598 114273598 1 + A G STAD 114273590 + 114273570 114273610 41 GATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTC GATGTCAGTTTGTCATATCCCCAACATCGTGTTGGAAATTC < 41bp 1 0.348216429727321 1 0.302353709936142 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273590 chr11:114273598 nonsynonymous SNV 1.000 0 29 hm5C_associated_SNPs_37947 0 0 1 0 3 RBM7 chr11:114273550 3'AG 114273550 Downstream 49bp
chr11 114273598 114273598 1 + A G STAD 114273590 + 114273570 114273610 41 GATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTC GATGTCAGTTTGTCATATCCCCAACATCGTGTTGGAAATTC < 41bp 1 0.348216429727321 1 0.302353709936142 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273590 chr11:114273598 nonsynonymous SNV 1.000 0 29 hm5C_associated_SNPs_37947 0 0 1 0 3 RBM7 chr11:114273554 3'AG 114273554 Downstream 45bp
chr11 114273598 114273598 1 + A G STAD 114273590 + 114273570 114273610 41 GATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTC GATGTCAGTTTGTCATATCCCCAACATCGTGTTGGAAATTC < 41bp 1 0.348216429727321 1 0.302353709936142 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273590 chr11:114273598 nonsynonymous SNV 1.000 0 29 hm5C_associated_SNPs_37947 0 0 1 0 3 RBM7 chr11:114273637 5'GT 114273637 Upstream 40bp
chr11 114273598 114273598 1 + A G STAD 114273591 + 114273571 114273611 41 ATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTCA ATGTCAGTTTGTCATATCCCCAACATCGTGTTGGAAATTCA < 41bp 1 0.73276139417253 1 0.327758103609085 experiment 0.53447721165494 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273591 chr11:114273598 nonsynonymous SNV 1.000 0 28 hm5C_associated_SNPs_37948 0 0 1 0 3 RBM7 chr11:114273550 3'AG 114273550 Downstream 49bp
chr11 114273598 114273598 1 + A G STAD 114273591 + 114273571 114273611 41 ATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTCA ATGTCAGTTTGTCATATCCCCAACATCGTGTTGGAAATTCA < 41bp 1 0.73276139417253 1 0.327758103609085 experiment 0.53447721165494 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273591 chr11:114273598 nonsynonymous SNV 1.000 0 28 hm5C_associated_SNPs_37948 0 0 1 0 3 RBM7 chr11:114273554 3'AG 114273554 Downstream 45bp
chr11 114273598 114273598 1 + A G STAD 114273591 + 114273571 114273611 41 ATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTCA ATGTCAGTTTGTCATATCCCCAACATCGTGTTGGAAATTCA < 41bp 1 0.73276139417253 1 0.327758103609085 experiment 0.53447721165494 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273591 chr11:114273598 nonsynonymous SNV 1.000 0 28 hm5C_associated_SNPs_37948 0 0 1 0 3 RBM7 chr11:114273637 5'GT 114273637 Upstream 40bp
chr11 114273598 114273598 1 + A G STAD 114273594 + 114273574 114273614 41 TCAGTTTGTCATATCCCCAACATCATGTTGGAAATTCAAGC TCAGTTTGTCATATCCCCAACATCGTGTTGGAAATTCAAGC < 41bp 1 0.305817882091759 1 0.0711756944656372 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273594 chr11:114273598 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_37949 0 0 1 0 3 RBM7 chr11:114273550 3'AG 114273550 Downstream 49bp
chr11 114273598 114273598 1 + A G STAD 114273594 + 114273574 114273614 41 TCAGTTTGTCATATCCCCAACATCATGTTGGAAATTCAAGC TCAGTTTGTCATATCCCCAACATCGTGTTGGAAATTCAAGC < 41bp 1 0.305817882091759 1 0.0711756944656372 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273594 chr11:114273598 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_37949 0 0 1 0 3 RBM7 chr11:114273554 3'AG 114273554 Downstream 45bp
chr11 114273598 114273598 1 + A G STAD 114273594 + 114273574 114273614 41 TCAGTTTGTCATATCCCCAACATCATGTTGGAAATTCAAGC TCAGTTTGTCATATCCCCAACATCGTGTTGGAAATTCAAGC < 41bp 1 0.305817882091759 1 0.0711756944656372 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273594 chr11:114273598 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_37949 0 0 1 0 3 RBM7 chr11:114273637 5'GT 114273637 Upstream 40bp
chr11 114273598 114273598 1 + A G STAD 114273597 + 114273577 114273617 41 GTTTGTCATATCCCCAACATCATGTTGGAAATTCAAGCCCT GTTTGTCATATCCCCAACATCGTGTTGGAAATTCAAGCCCT < 41bp 1 0.780997462880097 1 0.410175830125809 experiment 0.438005074239807 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273597 chr11:114273598 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_37950 0 0 1 0 3 RBM7 chr11:114273550 3'AG 114273550 Downstream 49bp
chr11 114273598 114273598 1 + A G STAD 114273597 + 114273577 114273617 41 GTTTGTCATATCCCCAACATCATGTTGGAAATTCAAGCCCT GTTTGTCATATCCCCAACATCGTGTTGGAAATTCAAGCCCT < 41bp 1 0.780997462880097 1 0.410175830125809 experiment 0.438005074239807 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273597 chr11:114273598 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_37950 0 0 1 0 3 RBM7 chr11:114273554 3'AG 114273554 Downstream 45bp
chr11 114273598 114273598 1 + A G STAD 114273597 + 114273577 114273617 41 GTTTGTCATATCCCCAACATCATGTTGGAAATTCAAGCCCT GTTTGTCATATCCCCAACATCGTGTTGGAAATTCAAGCCCT < 41bp 1 0.780997462880097 1 0.410175830125809 experiment 0.438005074239807 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273597 chr11:114273598 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_37950 0 0 1 0 3 RBM7 chr11:114273637 5'GT 114273637 Upstream 40bp
chr18 39637994 39637994 1 + C T STAD 39637984 + 39637964 39638004 41 AGTACCAAGAGTTCCGTAAACAGTGTTACACGGCTTTCCTC AGTACCAAGAGTTCCGTAAACAGTGTTACATGGCTTTCCTC < 41bp 1 0.775386822430828 1 0.71934449672699 experiment 0.449226355138344 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PIK3C3 ENSG00000078142 CDS Human protein_coding chr18:39637984 chr18:39637994 nonsynonymous SNV 0.994 3 31 hm5C_associated_SNPs_37951 0 0 0 0 1 PIK3C3 chr18:39638015 5'GT 39638015 Upstream 22bp
chr19 36216189 36216189 1 + C T STAD 36216190 + 36216170 36216210 41 TCACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTG TCACCTCTGTGCCAGGGGGTCCCCCGATGGTGTGCTTGCTG < 41bp 1 0.0597182149469713 1 0.112320005893707 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216190 chr19:36216189 synonymous SNV . 0 20 hm5C_associated_SNPs_37952 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 69bp
chr19 36216189 36216189 1 + C T STAD 36216190 + 36216170 36216210 41 TCACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTG TCACCTCTGTGCCAGGGGGTCCCCCGATGGTGTGCTTGCTG < 41bp 1 0.0597182149469713 1 0.112320005893707 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216190 chr19:36216189 synonymous SNV . 0 20 hm5C_associated_SNPs_37952 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 46bp
chr19 36216189 36216189 1 + C T STAD 36216191 + 36216171 36216211 41 CACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGT CACCTCTGTGCCAGGGGGTCCCCCGATGGTGTGCTTGCTGT < 41bp 1 0.0969360852172989 1 0.0775115489959717 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216191 chr19:36216189 synonymous SNV . 0 19 hm5C_associated_SNPs_37953 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 69bp
chr19 36216189 36216189 1 + C T STAD 36216191 + 36216171 36216211 41 CACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGT CACCTCTGTGCCAGGGGGTCCCCCGATGGTGTGCTTGCTGT < 41bp 1 0.0969360852172989 1 0.0775115489959717 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216191 chr19:36216189 synonymous SNV . 0 19 hm5C_associated_SNPs_37953 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 46bp
chr19 36216189 36216189 1 + C T STAD 36216192 + 36216172 36216212 41 ACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTG ACCTCTGTGCCAGGGGGTCCCCCGATGGTGTGCTTGCTGTG < 41bp 1 0.559620672508831 1 0.624752283096313 experiment 0.880758654982338 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216192 chr19:36216189 synonymous SNV . 0 18 hm5C_associated_SNPs_37954 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 69bp
chr19 36216189 36216189 1 + C T STAD 36216192 + 36216172 36216212 41 ACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTG ACCTCTGTGCCAGGGGGTCCCCCGATGGTGTGCTTGCTGTG < 41bp 1 0.559620672508831 1 0.624752283096313 experiment 0.880758654982338 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216192 chr19:36216189 synonymous SNV . 0 18 hm5C_associated_SNPs_37954 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 46bp
chr19 36216189 36216189 1 + C T STAD 36216193 + 36216173 36216213 41 CCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTGT CCTCTGTGCCAGGGGGTCCCCCGATGGTGTGCTTGCTGTGT < 41bp 1 0.129502721111782 1 0.362399101257324 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216193 chr19:36216189 synonymous SNV . 0 17 hm5C_associated_SNPs_37955 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 69bp
chr19 36216189 36216189 1 + C T STAD 36216193 + 36216173 36216213 41 CCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTGT CCTCTGTGCCAGGGGGTCCCCCGATGGTGTGCTTGCTGTGT < 41bp 1 0.129502721111782 1 0.362399101257324 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216193 chr19:36216189 synonymous SNV . 0 17 hm5C_associated_SNPs_37955 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 46bp
chr19 36216189 36216189 1 + C T STAD 36216194 + 36216174 36216214 41 CTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTGTG CTCTGTGCCAGGGGGTCCCCCGATGGTGTGCTTGCTGTGTG < 41bp 1 0.315158603085091 1 0.863245129585266 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216194 chr19:36216189 synonymous SNV . 0 16 hm5C_associated_SNPs_37956 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 69bp
chr19 36216189 36216189 1 + C T STAD 36216194 + 36216174 36216214 41 CTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTGTG CTCTGTGCCAGGGGGTCCCCCGATGGTGTGCTTGCTGTGTG < 41bp 1 0.315158603085091 1 0.863245129585266 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216194 chr19:36216189 synonymous SNV . 0 16 hm5C_associated_SNPs_37956 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 46bp
chr15 74325013 74325013 1 + T C STAD 74325006 + 74324986 74325026 41 TACAGTCAGTGCCCGGGGCACACCCCGTGCCAGTGTACGCC TACAGTCAGTGCCCGGGGCACACCCCGCGCCAGTGTACGCC < 41bp 1 0.330461902855964 1 0.0696938335895538 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74325006 chr15:74325013 nonsynonymous SNV 0.007 1 28 hm5C_associated_SNPs_37957 0 0 0 0 2 PML chr15:74324968 3'AG 74324968 Downstream 46bp
chr15 74325013 74325013 1 + T C STAD 74325006 + 74324986 74325026 41 TACAGTCAGTGCCCGGGGCACACCCCGTGCCAGTGTACGCC TACAGTCAGTGCCCGGGGCACACCCCGCGCCAGTGTACGCC < 41bp 1 0.330461902855964 1 0.0696938335895538 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74325006 chr15:74325013 nonsynonymous SNV 0.007 1 28 hm5C_associated_SNPs_37957 0 0 0 0 2 PML chr15:74325056 5'GT 74325056 Upstream 44bp
chr21 38865409 38865409 1 + G C STAD 38865404 + 38865384 38865424 41 CCTTGCCATTGATATGTGGTCCCTCGGGTGTATTTTGGTTG CCTTGCCATTGATATGTGGTCCCTCCGGTGTATTTTGGTTG < 41bp 1 0.0772483652839655 1 0.0365063846111298 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38865404 chr21:38865409 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_37958 0 0 1 0 2 DYRK1A chr21:38865319 3'AG 38865319 Downstream 91bp
chr21 38865409 38865409 1 + G C STAD 38865404 + 38865384 38865424 41 CCTTGCCATTGATATGTGGTCCCTCGGGTGTATTTTGGTTG CCTTGCCATTGATATGTGGTCCCTCCGGTGTATTTTGGTTG < 41bp 1 0.0772483652839655 1 0.0365063846111298 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38865404 chr21:38865409 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_37958 0 0 1 0 2 DYRK1A chr21:38865465 5'GT 38865465 Upstream 57bp
chr16 50342255 50342255 1 + T A STAD 50342243 + 50342223 50342263 41 TTCCCTCCTCTCCAGGACGGCGGCACTGGGTGTGTCCTTCG TTCCCTCCTCTCCAGGACGGCGGCACTGGGTGAGTCCTTCG < 41bp 1 0.52463094570148 1 0.361847698688507 experiment 0.950738108597041 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50342243 chr16:50342255 nonsynonymous SNV 0.974 1 33 hm5C_associated_SNPs_37962 0 0 1 0 2 ADCY7 chr16:50342238 3'AG 50342238 Downstream 18bp
chr16 50342255 50342255 1 + T A STAD 50342243 + 50342223 50342263 41 TTCCCTCCTCTCCAGGACGGCGGCACTGGGTGTGTCCTTCG TTCCCTCCTCTCCAGGACGGCGGCACTGGGTGAGTCCTTCG < 41bp 1 0.52463094570148 1 0.361847698688507 experiment 0.950738108597041 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50342243 chr16:50342255 nonsynonymous SNV 0.974 1 33 hm5C_associated_SNPs_37962 0 0 1 0 2 ADCY7 chr16:50342322 5'GT 50342322 Upstream 68bp
chr1 24996643 24996643 1 + G C STAD 24996652 + 24996632 24996672 41 GTCTGTAAGAAGGGTCTCATCCTCCCGATCTGTCTCCGGGT GTCTGTAAGAACGGTCTCATCCTCCCGATCTGTCTCCGGGT < 41bp 1 0.168401826562146 1 0.0423490107059479 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996652 chr1:24996643 nonsynonymous SNV 0.988 4 12 hm5C_associated_SNPs_37963 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 33bp
chr1 24996643 24996643 1 + G C STAD 24996653 + 24996633 24996673 41 TCTGTAAGAAGGGTCTCATCCTCCCGATCTGTCTCCGGGTC TCTGTAAGAACGGTCTCATCCTCCCGATCTGTCTCCGGGTC < 41bp 1 0.762402909959821 1 0.291382253170013 experiment 0.475194180080357 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996653 chr1:24996643 nonsynonymous SNV 0.988 4 11 hm5C_associated_SNPs_37964 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 33bp
chr12 117426518 117426518 1 + A G STAD 117426534 + 117426514 117426554 41 CAGTAGCCGCTGCTGGAGATCTGATGTACCTGCTCAAAGCC CAGTGGCCGCTGCTGGAGATCTGATGTACCTGCTCAAAGCC < 41bp 1 0.517279858412886 1 0.269261330366135 experiment 0.965440283174227 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117426534 chr12:117426518 synonymous SNV . 0 5 hm5C_associated_SNPs_37965 0 0 0 0 1 FBXW8 chr12:117426468 3'AG 117426468 Downstream 51bp
chr4 20555436 20555436 1 + G A STAD 20555440 + 20555420 20555460 41 TTTTCCAGAGCAATTGGAGCCAACCCTCTTTACTGTGATTG TTTTCCAGAGCAATTGAAGCCAACCCTCTTTACTGTGATTG < 41bp 1 0.12640117370185 1 0.164535760879517 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20555440 chr4:20555436 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_37966 0 0 1 0 1 SLIT2 chr4:20555428 3'AG 20555428 Downstream 9bp
chr10 118306813 118306813 1 + A C STAD 118306831 + 118306811 118306851 41 GAAGTTTGCTACGAAAGACTCGGCTGCTTCAGTGATGACTC GACGTTTGCTACGAAAGACTCGGCTGCTTCAGTGATGACTC < 41bp 1 0.716822672280079 1 0.3124920129776 experiment 0.566354655439842 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306831 chr10:118306813 nonsynonymous SNV 0.996 3 3 hm5C_associated_SNPs_37967 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 8bp
chr20 44571763 44571763 1 + A G STAD 44571747 + 44571727 44571767 41 GTCCTGCAGGCATTGAGCCTCCACGGGAGTCTTTCAACCGC GTCCTGCAGGCATTGAGCCTCCACGGGAGTCTTTCAGCCGC < 41bp 1 0.413544453140737 1 0.49583226442337 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44571747 chr20:44571763 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_37968 0 0 1 0 1 PCIF1 chr20:44571736 3'AG 44571736 Downstream 28bp
chr7 149426290 149426290 1 + G A STAD 149426306 + 149426286 149426326 41 GGCTGAGGCCTGCGAGTCAGCCGTCTCGGGCAGGGTAGGGG GGCTAAGGCCTGCGAGTCAGCCGTCTCGGGCAGGGTAGGGG < 41bp 1 0.0395131076541579 1 0.286056637763977 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149426306 chr7:149426290 nonsynonymous SNV 0.003 2 5 hm5C_associated_SNPs_37970 0 0 0 0 2 KRBA1 chr7:149426279 3'AG 149426279 Downstream 12bp
chr7 149426290 149426290 1 + G A STAD 149426306 + 149426286 149426326 41 GGCTGAGGCCTGCGAGTCAGCCGTCTCGGGCAGGGTAGGGG GGCTAAGGCCTGCGAGTCAGCCGTCTCGGGCAGGGTAGGGG < 41bp 1 0.0395131076541579 1 0.286056637763977 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149426306 chr7:149426290 nonsynonymous SNV 0.003 2 5 hm5C_associated_SNPs_37970 0 0 0 0 2 KRBA1;KRBA1 chr7:149426307 5'GT 149426307 Upstream 18bp
chr3 47050533 47050533 1 + C T STAD 47050517 + 47050497 47050537 41 TCCCTTGCCCATGAAGGTGGCCATCCGCAGCGTGGCCGTGA TCCCTTGCCCATGAAGGTGGCCATCCGCAGCGTGGCTGTGA < 41bp 1 0.0188126347260402 1 0.0552223026752472 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47050517 chr3:47050533 synonymous SNV . 0 37 hm5C_associated_SNPs_37971 0 0 1 0 2 NBEAL2 chr3:47050479 3'AG 47050479 Downstream 55bp
chr3 47050533 47050533 1 + C T STAD 47050517 + 47050497 47050537 41 TCCCTTGCCCATGAAGGTGGCCATCCGCAGCGTGGCCGTGA TCCCTTGCCCATGAAGGTGGCCATCCGCAGCGTGGCTGTGA < 41bp 1 0.0188126347260402 1 0.0552223026752472 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47050517 chr3:47050533 synonymous SNV . 0 37 hm5C_associated_SNPs_37971 0 0 1 0 2 NBEAL2 chr3:47050614 5'GT 47050614 Upstream 82bp
chr7 23235463 23235463 1 + A G STAD 23235473 + 23235453 23235493 41 TTCAGGTTTTACAGACATTTCACCAGAGGAATTGAGGCTTG TTCAGGTTTTGCAGACATTTCACCAGAGGAATTGAGGCTTG < 41bp 1 0.753295910868662 1 0.580677270889282 experiment 0.493408178262676 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23235473 chr7:23235463 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_37972 0 0 1 1 2 NUPL2 chr7:23235458 3'AG 23235458 Downstream 6bp
chr7 23235463 23235463 1 + A G STAD 23235473 + 23235453 23235493 41 TTCAGGTTTTACAGACATTTCACCAGAGGAATTGAGGCTTG TTCAGGTTTTGCAGACATTTCACCAGAGGAATTGAGGCTTG < 41bp 1 0.753295910868662 1 0.580677270889282 experiment 0.493408178262676 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23235473 chr7:23235463 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_37972 0 0 1 1 2 NUPL2 chr7:23235534 5'GT 23235534 Upstream 72bp
chr5 169127044 169127044 1 + G A STAD 169127059 + 169127039 169127079 41 TGCTGGTGGGTGACATCATTCAGATTCGCAAGGACTATCCA TGCTGATGGGTGACATCATTCAGATTCGCAAGGACTATCCA < 41bp 1 0.435479800432636 1 0.732904493808746 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169127059 chr5:169127044 nonsynonymous SNV 0.985 2 6 hm5C_associated_SNPs_37973 0 0 1 0 2 DOCK2 chr5:169127018 3'AG 169127018 Downstream 27bp
chr5 169127044 169127044 1 + G A STAD 169127059 + 169127039 169127079 41 TGCTGGTGGGTGACATCATTCAGATTCGCAAGGACTATCCA TGCTGATGGGTGACATCATTCAGATTCGCAAGGACTATCCA < 41bp 1 0.435479800432636 1 0.732904493808746 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169127059 chr5:169127044 nonsynonymous SNV 0.985 2 6 hm5C_associated_SNPs_37973 0 0 1 0 2 DOCK2 chr5:169127143 5'GT 169127143 Upstream 100bp
chr3 10320693 10320693 1 + G A STAD 10320677 + 10320657 10320697 41 CCCTCACCTTGGCTGCCTTGCGTGAGAACACCAGTCGCCTC CCCTCACCTTGGCTGCCTTGCGTGAGAACACCAGTCACCTC < 41bp 1 0.740554067384049 1 0.69447660446167 experiment 0.518891865231902 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TATDN2 ENSG00000157014 CDS Human other chr3:10320677 chr3:10320693 nonsynonymous SNV 0.998 0 37 hm5C_associated_SNPs_37974 0 0 1 0 2 TATDN2 chr3:10320718 5'GT 10320718 Upstream 26bp
chr3 10320693 10320693 1 + G A STAD 10320677 + 10320657 10320697 41 CCCTCACCTTGGCTGCCTTGCGTGAGAACACCAGTCGCCTC CCCTCACCTTGGCTGCCTTGCGTGAGAACACCAGTCACCTC < 41bp 1 0.740554067384049 1 0.69447660446167 experiment 0.518891865231902 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TATDN2 ENSG00000157014 CDS Human protein_coding chr3:10320677 chr3:10320693 nonsynonymous SNV 0.998 0 37 hm5C_associated_SNPs_37974 0 0 1 0 2 TATDN2 chr3:10320747 5'GT 10320747 Upstream 55bp
chr3 10320693 10320693 1 + G A STAD 10320688 + 10320668 10320708 41 GCTGCCTTGCGTGAGAACACCAGTCGCCTCTACAGTCTTTA GCTGCCTTGCGTGAGAACACCAGTCACCTCTACAGTCTTTA < 41bp 1 0.138186647419065 1 0.103454649448395 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TATDN2 ENSG00000157014 CDS Human other chr3:10320688 chr3:10320693 nonsynonymous SNV 0.998 0 26 hm5C_associated_SNPs_37975 0 0 1 0 2 TATDN2 chr3:10320718 5'GT 10320718 Upstream 26bp
chr3 10320693 10320693 1 + G A STAD 10320688 + 10320668 10320708 41 GCTGCCTTGCGTGAGAACACCAGTCGCCTCTACAGTCTTTA GCTGCCTTGCGTGAGAACACCAGTCACCTCTACAGTCTTTA < 41bp 1 0.138186647419065 1 0.103454649448395 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TATDN2 ENSG00000157014 CDS Human protein_coding chr3:10320688 chr3:10320693 nonsynonymous SNV 0.998 0 26 hm5C_associated_SNPs_37975 0 0 1 0 2 TATDN2 chr3:10320747 5'GT 10320747 Upstream 55bp
chr2 47205950 47205950 1 + C T STAD 47205958 + 47205938 47205978 41 ATAACAGCACGTCGAGGCATCTGAAAGGCTGTCACCCGCTT ATAACAGCACGTTGAGGCATCTGAAAGGCTGTCACCCGCTT < 41bp 1 0.569995530773064 1 0.617924571037292 experiment 0.860008938453873 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47205958 chr2:47205950 nonsynonymous SNV 0.271 1 13 hm5C_associated_SNPs_37976 0 0 1 0 2 TTC7A chr2:47205931 3'AG 47205931 Downstream 20bp
chr2 47205950 47205950 1 + C T STAD 47205958 + 47205938 47205978 41 ATAACAGCACGTCGAGGCATCTGAAAGGCTGTCACCCGCTT ATAACAGCACGTTGAGGCATCTGAAAGGCTGTCACCCGCTT < 41bp 1 0.569995530773064 1 0.617924571037292 experiment 0.860008938453873 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47205958 chr2:47205950 nonsynonymous SNV 0.271 1 13 hm5C_associated_SNPs_37976 0 0 1 0 2 TTC7A chr2:47206046 5'GT 47206046 Upstream 97bp
chr7 65706170 65706170 1 + T A STAD 65706154 + 65706134 65706174 41 AACTTGTCTTACATCCTGAACGGTGGATGAGAACACTCTTA AACTTGTCTTACATCCTGAACGGTGGATGAGAACACACTTA < 41bp 1 0.253773614547694 1 0.677960395812988 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPST1 ENSG00000169902 CDS Human protein_coding chr7:65706154 chr7:65706170 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_37977 0 0 1 0 1 TPST1 chr7:65706257 5'GT 65706257 Upstream 88bp
chr9 140110127 140110127 1 + C A STAD 140110114 + 140110094 140110134 41 CCTCCTTCCTGCAATAGGACCTGTCCGGGTGCCCCTCTGGG CCTCCTTCCTGCAATAGGACCTGTCCGGGTGCCACTCTGGG < 41bp 1 0.0377123195492536 1 0.0617672204971313 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110114 chr9:140110127 synonymous SNV . 0 34 hm5C_associated_SNPs_37978 0 0 1 0 1 NDOR1 chr9:140110111 3'AG 140110111 Downstream 17bp
chr19 50158031 50158031 1 + C G STAD 50158043 + 50158023 50158063 41 CTGGGGGGCTGCGGTTCGACCCCCCCCACCCCCACCGGGCT CTGGGGGGGTGCGGTTCGACCCCCCCCACCCCCACCGGGCT < 41bp 1 0.156623399109144 1 0.182524353265762 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50158043 chr19:50158031 synonymous SNV . 0 9 hm5C_associated_SNPs_37979 0 0 1 0 1 SCAF1 chr19:50158127 5'GT 50158127 Upstream 97bp
chr7 44733484 44733484 1 + C A STAD 44733465 + 44733445 44733485 41 CGGATGGCCCGCTCCTCCCCCTACCCCACTGACGTGGCCCG CGGATGGCCCGCTCCTCCCCCTACCCCACTGACGTGGCCAG < 41bp 1 0.173037664902974 1 0.309382230043411 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44733465 chr7:44733484 synonymous SNV . 0 40 hm5C_associated_SNPs_37981 0 0 1 0 1 OGDH chr7:44733424 3'AG 44733424 Downstream 61bp
chr7 44733484 44733484 1 + C A STAD 44733483 + 44733463 44733503 41 CCCTACCCCACTGACGTGGCCCGAGTGGTGAATGCCCCCAT CCCTACCCCACTGACGTGGCCAGAGTGGTGAATGCCCCCAT < 41bp 1 0.653367681848731 1 0.848892569541931 experiment 0.693264636302537 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44733483 chr7:44733484 synonymous SNV . 0 22 hm5C_associated_SNPs_37982 0 0 1 0 1 OGDH chr7:44733424 3'AG 44733424 Downstream 61bp
chr20 47635531 47635531 1 + C T STAD 47635527 + 47635507 47635547 41 TGACAGCTGGAAGGGTAGACCATACGCAAGTAAGGCCACTT TGACAGCTGGAAGGGTAGACCATATGCAAGTAAGGCCACTT < 41bp 1 0.110990016441337 1 0.263516545295715 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47635527 chr20:47635531 synonymous SNV . 0 25 hm5C_associated_SNPs_37983 0 0 1 0 1 ARFGEF2 chr20:47635535 5'GT 47635535 Upstream 5bp
chr19 6366288 6366288 1 + C T STAD 6366276 + 6366256 6366296 41 GGACGTCCCTCAGGGCCAAGCCACAGACATTGCCATCCAGG GGACGTCCCTCAGGGCCAAGCCACAGACATTGTCATCCAGG < 41bp 1 0.348800975047777 1 0.259414315223694 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPP ENSG00000125656 CDS Human protein_coding chr19:6366276 chr19:6366288 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_37984 0 0 1 0 2 CLPP chr19:6366269 3'AG 6366269 Downstream 20bp
chr19 6366288 6366288 1 + C T STAD 6366276 + 6366256 6366296 41 GGACGTCCCTCAGGGCCAAGCCACAGACATTGCCATCCAGG GGACGTCCCTCAGGGCCAAGCCACAGACATTGTCATCCAGG < 41bp 1 0.348800975047777 1 0.259414315223694 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPP ENSG00000125656 CDS Human protein_coding chr19:6366276 chr19:6366288 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_37984 0 0 1 0 2 CLPP chr19:6366374 5'GT 6366374 Upstream 87bp
chr19 6366288 6366288 1 + C T STAD 6366277 + 6366257 6366297 41 GACGTCCCTCAGGGCCAAGCCACAGACATTGCCATCCAGGC GACGTCCCTCAGGGCCAAGCCACAGACATTGTCATCCAGGC < 41bp 1 0.464387161827847 1 0.846078395843506 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPP ENSG00000125656 CDS Human protein_coding chr19:6366277 chr19:6366288 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_37985 0 0 1 0 2 CLPP chr19:6366269 3'AG 6366269 Downstream 20bp
chr19 6366288 6366288 1 + C T STAD 6366277 + 6366257 6366297 41 GACGTCCCTCAGGGCCAAGCCACAGACATTGCCATCCAGGC GACGTCCCTCAGGGCCAAGCCACAGACATTGTCATCCAGGC < 41bp 1 0.464387161827847 1 0.846078395843506 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPP ENSG00000125656 CDS Human protein_coding chr19:6366277 chr19:6366288 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_37985 0 0 1 0 2 CLPP chr19:6366374 5'GT 6366374 Upstream 87bp
chrX 47098545 47098545 1 + C A STAD 47098540 + 47098520 47098560 41 AGGGGACCAGGACTCCAGCACCTTCCCTGGCTGCATCAACA AGGGGACCAGGACTCCAGCACCTTCACTGGCTGCATCAACA < 41bp 1 0.0080765681102961 1 0.0531773865222931 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47098540 chrX:47098545 nonsynonymous SNV 0.929 4 26 hm5C_associated_SNPs_37986 0 0 1 0 1 USP11 chrX:47098578 5'GT 47098578 Upstream 34bp
chr5 132400712 132400712 1 + G A STAD 132400719 + 132400699 132400739 41 TCGTTCAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC TCGTTCAATTGGAACAGCAGCTAAAAGCCAGGTAAAGTTTC < 41bp 1 0.420696339643736 1 0.416877776384354 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132400719 chr5:132400712 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_37987 0 0 1 0 2 HSPA4 chr5:132400672 3'AG 132400672 Downstream 41bp
chr5 132400712 132400712 1 + G A STAD 132400719 + 132400699 132400739 41 TCGTTCAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC TCGTTCAATTGGAACAGCAGCTAAAAGCCAGGTAAAGTTTC < 41bp 1 0.420696339643736 1 0.416877776384354 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132400719 chr5:132400712 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_37987 0 0 1 0 2 HSPA4 chr5:132400729 5'GT 132400729 Upstream 18bp
chr3 47447464 47447464 1 + G A STAD 47447468 + 47447448 47447488 41 CCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGC CCTTCGCCTACCTACGAGAGCACTTCCCTCAAGCCTACAGC < 41bp 1 0.0839653843797061 1 0.0194356441497803 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47447468 chr3:47447464 synonymous SNV . 0 17 hm5C_associated_SNPs_37988 0 0 1 0 3 PTPN23 chr3:47447405 3'AG 47447405 Downstream 60bp
chr3 47447464 47447464 1 + G A STAD 47447468 + 47447448 47447488 41 CCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGC CCTTCGCCTACCTACGAGAGCACTTCCCTCAAGCCTACAGC < 41bp 1 0.0839653843797061 1 0.0194356441497803 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47447468 chr3:47447464 synonymous SNV . 0 17 hm5C_associated_SNPs_37988 0 0 1 0 3 PTPN23 chr3:47447435 3'AG 47447435 Downstream 30bp
chr3 47447464 47447464 1 + G A STAD 47447468 + 47447448 47447488 41 CCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGC CCTTCGCCTACCTACGAGAGCACTTCCCTCAAGCCTACAGC < 41bp 1 0.0839653843797061 1 0.0194356441497803 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47447468 chr3:47447464 synonymous SNV . 0 17 hm5C_associated_SNPs_37988 0 0 1 0 3 PTPN23 chr3:47447536 5'GT 47447536 Upstream 73bp
chr19 50906824 50906824 1 + G A STAD 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CATACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT < 41bp 1 0.0702555718313528 1 0.229276388883591 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906824 synonymous SNV . 0 2 hm5C_associated_SNPs_37989 2 0 1 1 2 POLD1 chr19:50906750 3'AG 50906750 Downstream 75bp
chr19 50906824 50906824 1 + G A STAD 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CATACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT < 41bp 1 0.0702555718313528 1 0.229276388883591 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906824 synonymous SNV . 0 2 hm5C_associated_SNPs_37989 2 0 1 1 2 POLD1 chr19:50906854 5'GT 50906854 Upstream 31bp
chr17 77755530 77755530 1 + G A STAD 77755519 + 77755499 77755539 41 CATGAGAAGGAGGTGCAGAACCGGAAGAGAGGCAAGAGGCC CATGAGAAGGAGGTGCAGAACCGGAAGAGAGACAAGAGGCC < 41bp 1 0.696230762268051 1 0.538327991962433 experiment 0.607538475463897 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755519 chr17:77755530 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_37990 0 0 1 0 2 CBX2 chr17:77755495 3'AG 77755495 Downstream 36bp
chr17 77755530 77755530 1 + G A STAD 77755519 + 77755499 77755539 41 CATGAGAAGGAGGTGCAGAACCGGAAGAGAGGCAAGAGGCC CATGAGAAGGAGGTGCAGAACCGGAAGAGAGACAAGAGGCC < 41bp 1 0.696230762268051 1 0.538327991962433 experiment 0.607538475463897 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755519 chr17:77755530 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_37990 0 0 1 0 2 CBX2 chr17:77755600 5'GT 77755600 Upstream 71bp
chr17 77755530 77755530 1 + G A STAD 77755547 + 77755527 77755567 41 GAGGCAAGAGGCCGAGAGGCCGGCCAAGGAAGCTCACTGCC GAGACAAGAGGCCGAGAGGCCGGCCAAGGAAGCTCACTGCC < 41bp 1 0.418687529785315 1 0.4477778673172 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755547 chr17:77755530 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_37991 0 0 1 0 2 CBX2 chr17:77755495 3'AG 77755495 Downstream 36bp
chr17 77755530 77755530 1 + G A STAD 77755547 + 77755527 77755567 41 GAGGCAAGAGGCCGAGAGGCCGGCCAAGGAAGCTCACTGCC GAGACAAGAGGCCGAGAGGCCGGCCAAGGAAGCTCACTGCC < 41bp 1 0.418687529785315 1 0.4477778673172 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755547 chr17:77755530 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_37991 0 0 1 0 2 CBX2 chr17:77755600 5'GT 77755600 Upstream 71bp
chr17 8192690 8192690 1 + G A STAD 8192673 + 8192653 8192693 41 AGAACCTGGCCCTGAGGGGCCGCTGTCAAGAAGCCTGGGTC AGAACCTGGCCCTGAGGGGCCGCTGTCAAGAAGCCTGAGTC < 41bp 1 0.469164824124283 1 0.426478743553162 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RANGRF ENSG00000108961 CDS Human protein_coding chr17:8192673 chr17:8192690 stopgain 0.995 1 38 hm5C_associated_SNPs_37992 0 0 1 0 1 RANGRF chr17:8192732 5'GT 8192732 Upstream 43bp
chr8 48883154 48883154 1 + C T STAD 48883170 + 48883150 48883190 41 ACATCTTGCTGTGTGGCGACCCTGGTACCAGCAAGTCCCAG ACATTTTGCTGTGTGGCGACCCTGGTACCAGCAAGTCCCAG < 41bp 1 0.284768727478277 1 0.17180523276329 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48883170 chr8:48883154 synonymous SNV . 0 5 hm5C_associated_SNPs_37993 0 0 1 0 1 MCM4 chr8:48883071 3'AG 48883071 Downstream 84bp
chr3 169985726 169985726 1 + C T STAD 169985728 + 169985708 169985748 41 ATCTACCGTAGAGGTGCACGCCGCTGGAGAAAGCTTTATTG ATCTACCGTAGAGGTGCATGCCGCTGGAGAAAGCTTTATTG < 41bp 1 0.435471113836865 1 0.489409476518631 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:169985728 chr3:169985726 nonsynonymous SNV 0.981 5 19 hm5C_associated_SNPs_37994 0 0 1 0 1 PRKCI chr3:169985703 3'AG 169985703 Downstream 24bp
chr12 53412625 53412625 1 + G A STAD 53412624 + 53412604 53412644 41 CGATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCA CGATGACGATGTGTATAGGGCACCTCCAATTGACCGTTCCA < 41bp 1 0.300261946209123 1 0.038093090057373 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412624 chr12:53412625 synonymous SNV . 0 22 hm5C_associated_SNPs_37995 0 0 1 0 1 EIF4B chr12:53412582 3'AG 53412582 Downstream 44bp
chr12 53412625 53412625 1 + G A STAD 53412626 + 53412606 53412646 41 ATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATC ATGACGATGTGTATAGGGCACCTCCAATTGACCGTTCCATC < 41bp 1 0.0589601516956494 1 0.0332088470458984 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412626 chr12:53412625 synonymous SNV . 0 20 hm5C_associated_SNPs_37996 0 0 1 0 1 EIF4B chr12:53412582 3'AG 53412582 Downstream 44bp
chr8 26505233 26505233 1 + C T STAD 26505249 + 26505229 26505269 41 AGGCCGCATTGCTGTGGGATCCGATGCCGACCTGGTCATCT AGGCTGCATTGCTGTGGGATCCGATGCCGACCTGGTCATCT < 41bp 1 0.173185708935161 1 0.170735239982605 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26505249 chr8:26505233 nonsynonymous SNV 0.987 4 5 hm5C_associated_SNPs_37997 0 0 1 0 1 DPYSL2 chr8:26505146 3'AG 26505146 Downstream 88bp
chr6 145103188 145103188 1 + G A STAD 145103189 + 145103169 145103209 41 ATGATGGACTTGAGCAAATGCATAAGGACCTGGTCAACGTT ATGATGGACTTGAGCAAATACATAAGGACCTGGTCAACGTT < 41bp 1 0.176789075303461 1 0.158808916807175 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:145103189 chr6:145103188 nonsynonymous SNV 0.999 0 20 hm5C_associated_SNPs_37999 0 0 1 0 1 UTRN chr6:145103259 5'GT 145103259 Upstream 72bp
chr3 51980283 51980283 1 + C A STAD 51980280 + 51980260 51980300 41 GCCATCCTCACTAGTGGGCTCCGCATCATGCCACATTCTGG GCCATCCTCACTAGTGGGCTCCGAATCATGCCACATTCTGG < 41bp 1 0.275221517264603 1 0.21607369184494 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PARP3 ENSG00000041880 CDS Human protein_coding chr3:51980280 chr3:51980283 synonymous SNV . 0 24 hm5C_associated_SNPs_38000 0 0 1 0 1 PARP3 chr3:51980359 5'GT 51980359 Upstream 77bp
chr19 45316732 45316732 1 + G A STAD 45316729 + 45316709 45316749 41 AGCCGCACGGTCCGGGAGGCCTCGGGCCTGCTCTCCCTCAC AGCCGCACGGTCCGGGAGGCCTCAGGCCTGCTCTCCCTCAC < 41bp 1 0.717976251270468 1 0.83860445022583 experiment 0.564047497459064 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCAM ENSG00000187244 CDS Human protein_coding chr19:45316729 chr19:45316732 synonymous SNV . 0 24 hm5C_associated_SNPs_38001 0 0 1 0 1 BCAM chr19:45316695 3'AG 45316695 Downstream 38bp
chr17 78335554 78335554 1 + G A STAD 78335559 + 78335539 78335579 41 CCCAAGAAGTTCGTGGACATCTTTCAGCAGACTCCTCTGGG CCCAAGAAGTTCGTGAACATCTTTCAGCAGACTCCTCTGGG < 41bp 1 0.0295155994691473 1 0.043266624212265 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78335559 chr17:78335554 nonsynonymous SNV 0.047 0 16 hm5C_associated_SNPs_38002 0 0 1 0 1 RNF213 chr17:78335534 3'AG 78335534 Downstream 21bp
chr19 18976558 18976558 1 + C T STAD 18976545 + 18976525 18976565 41 ATCTCCATGAGCCAGCCTTCCCAGATGAGCCAGCCCGGCCT ATCTCCATGAGCCAGCCTTCCCAGATGAGCCAGTCCGGCCT < 41bp 1 0.727352063418414 1 0.42777094244957 experiment 0.545295873163173 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18976545 chr19:18976558 nonsynonymous SNV 0.999 2 34 hm5C_associated_SNPs_38007 0 0 1 0 1 UPF1 chr19:18976587 5'GT 18976587 Upstream 30bp
chr1 203821346 203821346 1 + G A STAD 203821365 + 203821345 203821385 41 AGCATGAAAACTCGCCGACTCAGCTCTGCCTCAACAGGAAA AACATGAAAACTCGCCGACTCAGCTCTGCCTCAACAGGAAA < 41bp 1 0.446499490303424 1 0.341596603393555 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203821365 chr1:203821346 nonsynonymous SNV 0.016 1 2 hm5C_associated_SNPs_38008 0 0 0 0 1 ZC3H11A chr1:203821269 3'AG 203821269 Downstream 78bp
chr16 1556293 1556293 1 + G A STAD 1556292 + 1556272 1556312 41 AGCAGATTCAACTCCGTGGCCGGCCACTTCTTCTTCCCCCT AGCAGATTCAACTCCGTGGCCAGCCACTTCTTCTTCCCCCT < 41bp 1 0.274798184760223 1 0.123012006282806 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1556292 chr16:1556293 nonsynonymous SNV 0.739 4 22 hm5C_associated_SNPs_38010 0 0 1 0 1 TELO2 chr16:1556330 5'GT 1556330 Upstream 38bp
chr9 134021654 134021654 1 + C T STAD 134021668 + 134021648 134021688 41 TAGTTCCGTGCCATTGAAGTCCTCAGTCTTGCCCTCACCAT TAGTTCTGTGCCATTGAAGTCCTCAGTCTTGCCCTCACCAT < 41bp 1 0.238397908421655 1 0.0515927970409393 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NUP214 ENSG00000126883 CDS Human protein_coding chr9:134021668 chr9:134021654 synonymous SNV . 0 7 hm5C_associated_SNPs_38011 0 0 0 0 1 NUP214 chr9:134021691 5'GT 134021691 Upstream 38bp
chr1 22307570 22307570 1 + C T STAD 22307561 + 22307541 22307581 41 ACCTACCAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAA ACCTACCAGGTGGTGTTGGGCGAGTACGATCGTGCTGTGAA < 41bp 1 0.59870900929185 1 0.380984157323837 experiment 0.802581981416301 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307561 chr1:22307570 synonymous SNV . 0 30 hm5C_associated_SNPs_38012 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 40bp
chr1 22307570 22307570 1 + C T STAD 22307561 + 22307541 22307581 41 ACCTACCAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAA ACCTACCAGGTGGTGTTGGGCGAGTACGATCGTGCTGTGAA < 41bp 1 0.59870900929185 1 0.380984157323837 experiment 0.802581981416301 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307561 chr1:22307570 synonymous SNV . 0 30 hm5C_associated_SNPs_38012 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 96bp
chr1 22307570 22307570 1 + C T STAD 22307567 + 22307547 22307587 41 CAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGG CAGGTGGTGTTGGGCGAGTACGATCGTGCTGTGAAGGAGGG < 41bp 1 0.235524066093211 1 0.440507590770721 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307567 chr1:22307570 synonymous SNV . 0 24 hm5C_associated_SNPs_38013 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 40bp
chr1 22307570 22307570 1 + C T STAD 22307567 + 22307547 22307587 41 CAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGG CAGGTGGTGTTGGGCGAGTACGATCGTGCTGTGAAGGAGGG < 41bp 1 0.235524066093211 1 0.440507590770721 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307567 chr1:22307570 synonymous SNV . 0 24 hm5C_associated_SNPs_38013 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 96bp
chr1 22307570 22307570 1 + C T STAD 22307575 + 22307555 22307595 41 GTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCCCGAGC GTTGGGCGAGTACGATCGTGCTGTGAAGGAGGGCCCCGAGC < 41bp 1 0.607505356801889 1 0.126489788293839 experiment 0.784989286396222 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307575 chr1:22307570 synonymous SNV . 0 16 hm5C_associated_SNPs_38014 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 40bp
chr1 22307570 22307570 1 + C T STAD 22307575 + 22307555 22307595 41 GTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCCCGAGC GTTGGGCGAGTACGATCGTGCTGTGAAGGAGGGCCCCGAGC < 41bp 1 0.607505356801889 1 0.126489788293839 experiment 0.784989286396222 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307575 chr1:22307570 synonymous SNV . 0 16 hm5C_associated_SNPs_38014 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 96bp
chr1 22307570 22307570 1 + C T STAD 22307588 + 22307568 22307608 41 GACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT GATCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT < 41bp 1 0.295943256133852 1 0.127979606389999 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307588 chr1:22307570 synonymous SNV . 0 3 hm5C_associated_SNPs_38015 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 40bp
chr1 22307570 22307570 1 + C T STAD 22307588 + 22307568 22307608 41 GACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT GATCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT < 41bp 1 0.295943256133852 1 0.127979606389999 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307588 chr1:22307570 synonymous SNV . 0 3 hm5C_associated_SNPs_38015 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 96bp
chr1 22307570 22307570 1 + C T STAD 22307589 + 22307569 22307609 41 ACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC ATCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC < 41bp 1 0.55979537295188 1 0.51963871717453 experiment 0.88040925409624 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307589 chr1:22307570 synonymous SNV . 0 2 hm5C_associated_SNPs_38016 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 40bp
chr1 22307570 22307570 1 + C T STAD 22307589 + 22307569 22307609 41 ACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC ATCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC < 41bp 1 0.55979537295188 1 0.51963871717453 experiment 0.88040925409624 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307589 chr1:22307570 synonymous SNV . 0 2 hm5C_associated_SNPs_38016 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 96bp
chr1 22307570 22307570 1 + C T STAD 22307590 + 22307570 22307610 41 CCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA TCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA < 41bp 1 0.414710315943959 1 0.255541086196899 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307590 chr1:22307570 synonymous SNV . 0 1 hm5C_associated_SNPs_38017 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 40bp
chr1 22307570 22307570 1 + C T STAD 22307590 + 22307570 22307610 41 CCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA TCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA < 41bp 1 0.414710315943959 1 0.255541086196899 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307590 chr1:22307570 synonymous SNV . 0 1 hm5C_associated_SNPs_38017 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 96bp
chr4 103537599 103537599 1 + C T STAD 103537592 + 103537572 103537612 41 TTGTGCTTTCTCCCCTCAGACGAGCTCCGAGACAGTGACAG TTGTGCTTTCTCCCCTCAGACGAGCTCTGAGACAGTGACAG < 41bp 1 0.450828315434513 1 0.750001192092896 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103537592 chr4:103537599 stopgain 0.840 0 28 hm5C_associated_SNPs_38018 0 0 1 0 1 NFKB1 chr4:103537591 3'AG 103537591 Downstream 9bp
chr8 143782006 143782006 1 + C A STAD 143782018 + 143781998 143782038 41 ACGCCAACCTGACTGCGAGACAACGAGATCCAGAGGACTCC ACGCCAACATGACTGCGAGACAACGAGATCCAGAGGACTCC < 41bp 1 0.647596162037389 1 0.141574859619141 experiment 0.704807675925222 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LY6K ENSG00000160886 CDS Human protein_coding chr8:143782018 chr8:143782006 nonsynonymous SNV 0.025 1 9 hm5C_associated_SNPs_38019 0 0 1 0 1 LY6K chr8:143782048 5'GT 143782048 Upstream 43bp
chr9 37770016 37770016 1 + G A STAD 37770013 + 37769993 37770033 41 ACCTGACTCCTGACTCAGAACACGGTATGTAGTTGAATGCA ACCTGACTCCTGACTCAGAACACAGTATGTAGTTGAATGCA < 41bp 1 0.492623681749148 1 0.309346258640289 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37770013 chr9:37770016 nonsynonymous SNV 0.845 1 24 hm5C_associated_SNPs_38020 0 0 1 1 2 TRMT10B chr9:37769938 3'AG 37769938 Downstream 79bp
chr9 37770016 37770016 1 + G A STAD 37770013 + 37769993 37770033 41 ACCTGACTCCTGACTCAGAACACGGTATGTAGTTGAATGCA ACCTGACTCCTGACTCAGAACACAGTATGTAGTTGAATGCA < 41bp 1 0.492623681749148 1 0.309346258640289 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37770013 chr9:37770016 nonsynonymous SNV 0.845 1 24 hm5C_associated_SNPs_38020 0 0 1 1 2 TRMT10B chr9:37770016 5'GT 37770016 Upstream 1bp
chr11 70275270 70275270 1 + C T STAD 70275262 + 70275242 70275282 41 GGAGAGAGCCCAGCGGATGGCCAAGGAGCGGCAGGAGCAGG GGAGAGAGCCCAGCGGATGGCCAAGGAGTGGCAGGAGCAGG < 41bp 1 0.438656559997884 1 0.408257186412811 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70275262 chr11:70275270 nonsynonymous SNV 0.989 3 29 hm5C_associated_SNPs_38023 0 0 1 0 1 CTTN chr11:70275305 5'GT 70275305 Upstream 36bp
chr11 70275270 70275270 1 + C T STAD 70275263 + 70275243 70275283 41 GAGAGAGCCCAGCGGATGGCCAAGGAGCGGCAGGAGCAGGA GAGAGAGCCCAGCGGATGGCCAAGGAGTGGCAGGAGCAGGA < 41bp 1 0.789431173126191 1 0.824448525905609 experiment 0.421137653747618 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70275263 chr11:70275270 nonsynonymous SNV 0.989 3 28 hm5C_associated_SNPs_38024 0 0 1 0 1 CTTN chr11:70275305 5'GT 70275305 Upstream 36bp
chr11 45948318 45948318 1 + G T STAD 45948298 + 45948278 45948318 41 CACAACTGGACGAGGAAGACCCCTGCTTTGAGTTCCGGCAG CACAACTGGACGAGGAAGACCCCTGCTTTGAGTTCCGGCAT < 41bp 1 0.20642384222735 1 0.410239279270172 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45948298 chr11:45948318 nonsynonymous SNV 0.997 1 41 hm5C_associated_SNPs_38025 0 0 0 0 1 LARGE2 chr11:45948262 3'AG 45948262 Downstream 57bp
chr17 16329476 16329476 1 + G A STAD 16329457 + 16329437 16329477 41 GAGTTTTCAGGACTGAGCCACCTTTCCCGAAAGTTCACCGA GAGTTTTCAGGACTGAGCCACCTTTCCCGAAAGTTCACCAA < 41bp 1 0.00961557437979997 1 0.0510753393173218 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16329457 chr17:16329476 nonsynonymous SNV 0.968 5 40 hm5C_associated_SNPs_38027 0 0 0 0 1 TRPV2 chr17:16329413 3'AG 16329413 Downstream 64bp
chr12 101012286 101012286 1 + C A STAD 101012291 + 101012271 101012311 41 TTGAGTTAGAAGAGACTTTGCTTAATACTTCTGGGCCTGAA TTGAGTTAGAAGAGAATTTGCTTAATACTTCTGGGCCTGAA < 41bp 1 0.541290184191233 1 0.309516549110413 experiment 0.917419631617534 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:101012291 chr12:101012286 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_38031 0 0 1 0 2 GAS2L3 chr12:101012227 3'AG 101012227 Downstream 60bp
chr12 101012286 101012286 1 + C A STAD 101012291 + 101012271 101012311 41 TTGAGTTAGAAGAGACTTTGCTTAATACTTCTGGGCCTGAA TTGAGTTAGAAGAGAATTTGCTTAATACTTCTGGGCCTGAA < 41bp 1 0.541290184191233 1 0.309516549110413 experiment 0.917419631617534 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:101012291 chr12:101012286 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_38031 0 0 1 0 2 GAS2L3 chr12:101012365 5'GT 101012365 Upstream 80bp
chr1 223934706 223934706 1 + G A STAD 223934719 + 223934699 223934739 41 GATCAACGGATGCTATGAAGCGCTATCAGGGGGTGCCACCA GATCAACAGATGCTATGAAGCGCTATCAGGGGGTGCCACCA < 41bp 1 0.74192549148419 1 0.797599256038666 experiment 0.516149017031619 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223934719 chr1:223934706 nonsynonymous SNV 0.706 5 8 hm5C_associated_SNPs_38032 0 0 1 0 1 CAPN2 chr1:223934699 3'AG 223934699 Downstream 8bp
chr1 223934706 223934706 1 + G A STAD 223934721 + 223934701 223934741 41 TCAACGGATGCTATGAAGCGCTATCAGGGGGTGCCACCACT TCAACAGATGCTATGAAGCGCTATCAGGGGGTGCCACCACT < 41bp 1 0.0660307922999492 1 0.0595785677433014 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223934721 chr1:223934706 nonsynonymous SNV 0.706 5 6 hm5C_associated_SNPs_38033 0 0 1 0 1 CAPN2 chr1:223934699 3'AG 223934699 Downstream 8bp
chr4 123145714 123145714 1 + T C STAD 123145724 + 123145704 123145744 41 GGTCTCCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG GGTCTCCAGCCGAGAGCACACGCTATGTTCTCAGCAGAAGG < 41bp 1 0.418399845451588 1 0.312998533248901 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123145724 chr4:123145714 nonsynonymous SNV 0.998 3 11 hm5C_associated_SNPs_38034 0 0 1 0 2 KIAA1109 chr4:123145653 3'AG 123145653 Downstream 62bp
chr4 123145714 123145714 1 + T C STAD 123145724 + 123145704 123145744 41 GGTCTCCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG GGTCTCCAGCCGAGAGCACACGCTATGTTCTCAGCAGAAGG < 41bp 1 0.418399845451588 1 0.312998533248901 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123145724 chr4:123145714 nonsynonymous SNV 0.998 3 11 hm5C_associated_SNPs_38034 0 0 1 0 2 KIAA1109 chr4:123145656 3'AG 123145656 Downstream 59bp
chr3 172052839 172052839 1 + C T STAD 172052840 + 172052820 172052860 41 CAGACCGCTTGTCAAAGGCCCAGTTACATCTCATGGCTTTA CAGACCGCTTGTCAAAGGCTCAGTTACATCTCATGGCTTTA < 41bp 1 0.0790825024792876 1 0.0433284640312195 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172052840 chr3:172052839 nonsynonymous SNV 0.964 0 20 hm5C_associated_SNPs_38035 0 0 0 0 1 FNDC3B chr3:172052872 5'GT 172052872 Upstream 34bp
chr5 173378883 173378883 1 + G A STAD 173378893 + 173378873 173378913 41 ATGGTTCACAGCCACTTGACCCACGAAAAACTATATTTGTT ATGGTTCACAACCACTTGACCCACGAAAAACTATATTTGTT < 41bp 1 0.144637514419746 1 0.18719956278801 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173378893 chr5:173378883 synonymous SNV . 0 11 hm5C_associated_SNPs_38036 0 0 1 0 2 CPEB4 chr5:173378827 3'AG 173378827 Downstream 57bp
chr5 173378883 173378883 1 + G A STAD 173378893 + 173378873 173378913 41 ATGGTTCACAGCCACTTGACCCACGAAAAACTATATTTGTT ATGGTTCACAACCACTTGACCCACGAAAAACTATATTTGTT < 41bp 1 0.144637514419746 1 0.18719956278801 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173378893 chr5:173378883 synonymous SNV . 0 11 hm5C_associated_SNPs_38036 0 0 1 0 2 CPEB4 chr5:173378941 5'GT 173378941 Upstream 59bp
chr5 70939714 70939714 1 + G A STAD 70939706 + 70939686 70939726 41 AAACAACGGAGTTCTCTTTTCTGAATCTGCAAAAAAGGCAA AAACAACGGAGTTCTCTTTTCTGAATCTACAAAAAAGGCAA < 41bp 1 0.691854590180354 1 0.725523769855499 experiment 0.616290819639292 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCCC2 ENSG00000131844 CDS Human protein_coding chr5:70939706 chr5:70939714 nonsynonymous SNV 0.996 5 29 hm5C_associated_SNPs_38037 0 0 0 1 1 MCCC2 chr5:70939646 3'AG 70939646 Downstream 69bp
chr1 158063222 158063222 1 + G A STAD 158063221 + 158063201 158063241 41 CCTTGGTATTCTTCCTCTACCGGCGCCGCAAAGGCAGTGAG CCTTGGTATTCTTCCTCTACCAGCGCCGCAAAGGCAGTGAG < 41bp 1 0.605466669659702 1 0.449835360050201 experiment 0.789066660680595 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063221 chr1:158063222 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_38041 0 0 0 0 2 KIRREL chr1:158063129 3'AG 158063129 Downstream 94bp
chr1 158063222 158063222 1 + G A STAD 158063221 + 158063201 158063241 41 CCTTGGTATTCTTCCTCTACCGGCGCCGCAAAGGCAGTGAG CCTTGGTATTCTTCCTCTACCAGCGCCGCAAAGGCAGTGAG < 41bp 1 0.605466669659702 1 0.449835360050201 experiment 0.789066660680595 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063221 chr1:158063222 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_38041 0 0 0 0 2 KIRREL chr1:158063236 5'GT 158063236 Upstream 15bp
chr19 45535864 45535864 1 + G A STAD 45535862 + 45535842 45535882 41 TTCTCCCAGGCCGACGTGCACCGCCAGATTGCCATTGTGTT TTCTCCCAGGCCGACGTGCACCACCAGATTGCCATTGTGTT < 41bp 1 0.0551618491720797 1 0.0386795997619629 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RELB ENSG00000104856 CDS Human protein_coding chr19:45535862 chr19:45535864 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_38043 0 0 0 0 1 RELB chr19:45535792 3'AG 45535792 Downstream 73bp
chr8 104438300 104438300 1 + C T STAD 104438295 + 104438275 104438315 41 TATTTCTAGGTTGGTGATGACAAAACTGTGAAGCAGTGGAA TATTTCTAGGTTGGTGATGACAAAATTGTGAAGCAGTGGAA < 41bp 1 0.707348465422186 1 0.43095475435257 experiment 0.585303069155628 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438295 chr8:104438300 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_38045 0 0 1 0 2 DCAF13 chr8:104438284 3'AG 104438284 Downstream 17bp
chr8 104438300 104438300 1 + C T STAD 104438295 + 104438275 104438315 41 TATTTCTAGGTTGGTGATGACAAAACTGTGAAGCAGTGGAA TATTTCTAGGTTGGTGATGACAAAATTGTGAAGCAGTGGAA < 41bp 1 0.707348465422186 1 0.43095475435257 experiment 0.585303069155628 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438295 chr8:104438300 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_38045 0 0 1 0 2 DCAF13 chr8:104438373 5'GT 104438373 Upstream 74bp
chr8 104438300 104438300 1 + C T STAD 104438308 + 104438288 104438328 41 GTGATGACAAAACTGTGAAGCAGTGGAAAATGGATGGGCCA GTGATGACAAAATTGTGAAGCAGTGGAAAATGGATGGGCCA < 41bp 1 0.417845674735077 1 0.582442939281464 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438308 chr8:104438300 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_38046 0 0 1 0 2 DCAF13 chr8:104438284 3'AG 104438284 Downstream 17bp
chr8 104438300 104438300 1 + C T STAD 104438308 + 104438288 104438328 41 GTGATGACAAAACTGTGAAGCAGTGGAAAATGGATGGGCCA GTGATGACAAAATTGTGAAGCAGTGGAAAATGGATGGGCCA < 41bp 1 0.417845674735077 1 0.582442939281464 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438308 chr8:104438300 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_38046 0 0 1 0 2 DCAF13 chr8:104438373 5'GT 104438373 Upstream 74bp
chr11 47602079 47602079 1 + A G STAD 47602077 + 47602057 47602097 41 AATATGCCTTTTCCTTCCAGCCACTGTCAGACCACGGAATG AATATGCCTTTTCCTTCCAGCCGCTGTCAGACCACGGAATG < 41bp 1 0.257193211196369 1 0.0809616148471832 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47602077 chr11:47602079 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_38050 0 0 1 0 2 NDUFS3 chr11:47602077 3'AG 47602077 Downstream 3bp
chr11 47602079 47602079 1 + A G STAD 47602077 + 47602057 47602097 41 AATATGCCTTTTCCTTCCAGCCACTGTCAGACCACGGAATG AATATGCCTTTTCCTTCCAGCCGCTGTCAGACCACGGAATG < 41bp 1 0.257193211196369 1 0.0809616148471832 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47602077 chr11:47602079 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_38050 0 0 1 0 2 NDUFS3 chr11:47602174 5'GT 47602174 Upstream 96bp
chr5 145641097 145641097 1 + G T STAD 145641091 + 145641071 145641111 41 AGGTTGCTTTTAAGGGTGACCCAGAAGCAGCCCTAATCCAA AGGTTGCTTTTAAGGGTGACCCAGAATCAGCCCTAATCCAA < 41bp 1 0.441213647649676 1 0.328835964202881 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM27 ENSG00000091009 CDS Human protein_coding chr5:145641091 chr5:145641097 nonsynonymous SNV 0.997 2 27 hm5C_associated_SNPs_38051 0 0 1 0 1 RBM27 chr5:145641073 3'AG 145641073 Downstream 25bp
chr3 184040725 184040725 1 + G A STAD 184040721 + 184040701 184040741 41 CCAGAGGGATTGCCACATATCAGTGACGTGGTGCTGGACAA CCAGAGGGATTGCCACATATCAGTAACGTGGTGCTGGACAA < 41bp 1 0.760039330830995 1 0.25347363948822 experiment 0.47992133833801 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184040721 chr3:184040725 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_38052 0 0 1 0 1 EIF4G1 chr3:184040742 5'GT 184040742 Upstream 18bp
chrX 48457787 48457787 1 + G A STAD 48457772 + 48457752 48457792 41 TGATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTG TGATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCATTCTG < 41bp 1 0.299710372244213 1 0.0477938055992126 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457772 chrX:48457787 nonsynonymous SNV 0.997 3 36 hm5C_associated_SNPs_38053 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 64bp
chrX 48457787 48457787 1 + G A STAD 48457773 + 48457753 48457793 41 GATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGT GATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCATTCTGT < 41bp 1 0.282560763691599 1 0.354062914848328 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457773 chrX:48457787 nonsynonymous SNV 0.997 3 35 hm5C_associated_SNPs_38054 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 64bp
chrX 48457787 48457787 1 + G A STAD 48457774 + 48457754 48457794 41 ATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGTC ATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCATTCTGTC < 41bp 1 0.672931954403457 1 0.643774807453156 experiment 0.654136091193085 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457774 chrX:48457787 nonsynonymous SNV 0.997 3 34 hm5C_associated_SNPs_38055 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 64bp
chr1 155032743 155032743 1 + C A STAD 155032751 + 155032731 155032771 41 GTCCTGGTGATGCTTGGTGCCAGCTACTGGTACCGTGCCCG GTCCTGGTGATGATTGGTGCCAGCTACTGGTACCGTGCCCG < 41bp 1 0.533838649619145 1 0.51845246553421 experiment 0.932322700761709 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155032751 chr1:155032743 nonsynonymous SNV 0.985 2 13 hm5C_associated_SNPs_38056 0 0 0 0 2 ADAM15 chr1:155032681 3'AG 155032681 Downstream 63bp
chr1 155032743 155032743 1 + C A STAD 155032751 + 155032731 155032771 41 GTCCTGGTGATGCTTGGTGCCAGCTACTGGTACCGTGCCCG GTCCTGGTGATGATTGGTGCCAGCTACTGGTACCGTGCCCG < 41bp 1 0.533838649619145 1 0.51845246553421 experiment 0.932322700761709 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155032751 chr1:155032743 nonsynonymous SNV 0.985 2 13 hm5C_associated_SNPs_38056 0 0 0 0 2 ADAM15 chr1:155032819 5'GT 155032819 Upstream 77bp
chr2 15747341 15747341 1 + C T STAD 15747340 + 15747320 15747360 41 CAAAGTTTCTCCCCAATGCTCCGAAAGCTCTCATTGTTGAA CAAAGTTTCTCCCCAATGCTCTGAAAGCTCTCATTGTTGAA < 41bp 1 0.702774738478627 1 0.175450682640076 experiment 0.594450523042745 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX1 ENSG00000079785 CDS Human protein_coding chr2:15747340 chr2:15747341 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_38057 0 0 1 0 2 DDX1 chr2:15747299 3'AG 15747299 Downstream 43bp
chr2 15747341 15747341 1 + C T STAD 15747340 + 15747320 15747360 41 CAAAGTTTCTCCCCAATGCTCCGAAAGCTCTCATTGTTGAA CAAAGTTTCTCCCCAATGCTCTGAAAGCTCTCATTGTTGAA < 41bp 1 0.702774738478627 1 0.175450682640076 experiment 0.594450523042745 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX1 ENSG00000079785 CDS Human protein_coding chr2:15747340 chr2:15747341 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_38057 0 0 1 0 2 DDX1 chr2:15747437 5'GT 15747437 Upstream 97bp
chr7 39991409 39991409 1 + G A STAD 39991410 + 39991390 39991430 41 CCTAGTCCCTACAGCAGCAGCAGCTGGCGCCGCTCTCGCAG CCTAGTCCCTACAGCAGCAACAGCTGGCGCCGCTCTCGCAG < 41bp 1 0.602881421576493 1 0.474817514419556 experiment 0.794237156847013 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:39991410 chr7:39991409 nonsynonymous SNV 0.999 1 20 hm5C_associated_SNPs_38059 0 0 1 0 1 CDK13 chr7:39991451 5'GT 39991451 Upstream 43bp
chr7 39991409 39991409 1 + G A STAD 39991428 + 39991408 39991448 41 AGCAGCTGGCGCCGCTCTCGCAGTCCCTACAGCCCTGTGCT AACAGCTGGCGCCGCTCTCGCAGTCCCTACAGCCCTGTGCT < 41bp 1 0.213711754295125 1 0.733130574226379 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:39991428 chr7:39991409 nonsynonymous SNV 0.999 1 2 hm5C_associated_SNPs_38060 0 0 1 0 1 CDK13 chr7:39991451 5'GT 39991451 Upstream 43bp
chr3 9867556 9867556 1 + C T STAD 9867539 + 9867519 9867559 41 TCCAGCGCTGTGAGGACATCCTGCAGCAGCTGCAGGCCGTG TCCAGCGCTGTGAGGACATCCTGCAGCAGCTGCAGGCTGTG < 41bp 1 0.782322190833149 1 0.770667016506195 experiment 0.435355618333701 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARPC4-TTLL3;TTLL3 ENSG00000214021;ENSG00000250151 CDS Human other chr3:9867539 chr3:9867556 synonymous SNV . 0 38 hm5C_associated_SNPs_38061 0 0 1 0 2 ARPC4-TTLL3;TTLL3 chr3:9867484 3'AG 9867484 Downstream 73bp
chr3 9867556 9867556 1 + C T STAD 9867539 + 9867519 9867559 41 TCCAGCGCTGTGAGGACATCCTGCAGCAGCTGCAGGCCGTG TCCAGCGCTGTGAGGACATCCTGCAGCAGCTGCAGGCTGTG < 41bp 1 0.782322190833149 1 0.770667016506195 experiment 0.435355618333701 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARPC4-TTLL3;TTLL3 ENSG00000214021;ENSG00000250151 CDS Human other chr3:9867539 chr3:9867556 synonymous SNV . 0 38 hm5C_associated_SNPs_38061 0 0 1 0 2 ARPC4-TTLL3;TTLL3 chr3:9867632 5'GT 9867632 Upstream 77bp
chr6 163984567 163984567 1 + C T STAD 163984557 + 163984537 163984577 41 CCTGCGTACTCCTACGCCAGCTGGCCCTACCATAATGCCTT CCTGCGTACTCCTACGCCAGCTGGCCCTACTATAATGCCTT < 41bp 1 0.357445157651036 1 0.384605646133423 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QKI ENSG00000112531 CDS Human protein_coding chr6:163984557 chr6:163984567 synonymous SNV . 0 31 hm5C_associated_SNPs_38063 0 0 1 0 1 QKI chr6:163984476 3'AG 163984476 Downstream 92bp
chr11 65347694 65347694 1 + C T STAD 65347700 + 65347680 65347720 41 TGAGCTGAGCCTCACTCTTTCCGGGGTGCTGCTGCGGGAGG TGAGCTGAGCCTCATTCTTTCCGGGGTGCTGCTGCGGGAGG < 41bp 1 0.633459825958072 1 0.719172477722168 experiment 0.733080348083855 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65347700 chr11:65347694 nonsynonymous SNV 0.980 4 15 hm5C_associated_SNPs_38064 0 0 1 0 1 EHBP1L1 chr11:65347730 5'GT 65347730 Upstream 37bp
chr12 53858560 53858560 1 + G A STAD 53858580 + 53858560 53858600 41 GCAGCGACAGTGCGAGCTTTCCCCACACCACCCCGTCCATG ACAGCGACAGTGCGAGCTTTCCCCACACCACCCCGTCCATG < 41bp 1 0.78280417947707 1 0.278047561645508 experiment 0.434391641045859 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCBP2 ENSG00000197111 CDS Human protein_coding chr12:53858580 chr12:53858560 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_38066 0 0 1 0 2 PCBP2 chr12:53858544 3'AG 53858544 Downstream 17bp
chr12 53858560 53858560 1 + G A STAD 53858580 + 53858560 53858600 41 GCAGCGACAGTGCGAGCTTTCCCCACACCACCCCGTCCATG ACAGCGACAGTGCGAGCTTTCCCCACACCACCCCGTCCATG < 41bp 1 0.78280417947707 1 0.278047561645508 experiment 0.434391641045859 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCBP2 ENSG00000197111 CDS Human protein_coding chr12:53858580 chr12:53858560 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_38066 0 0 1 0 2 PCBP2 chr12:53858636 5'GT 53858636 Upstream 77bp
chr14 78183895 78183895 1 + A G STAD 78183914 + 78183894 78183934 41 AAGATTTTTGAGACTGCAGCCTATTAATAAAGTTAACATAA AGGATTTTTGAGACTGCAGCCTATTAATAAAGTTAACATAA < 41bp 1 0.177094467910038 1 0.0678490400314331 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLIRP ENSG00000119705 CDS Human protein_coding chr14:78183914 chr14:78183895 synonymous SNV . 0 2 hm5C_associated_SNPs_38069 0 0 1 0 3 SLIRP chr14:78183823 3'AG 78183823 Downstream 73bp
chr14 78183895 78183895 1 + A G STAD 78183914 + 78183894 78183934 41 AAGATTTTTGAGACTGCAGCCTATTAATAAAGTTAACATAA AGGATTTTTGAGACTGCAGCCTATTAATAAAGTTAACATAA < 41bp 1 0.177094467910038 1 0.0678490400314331 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLIRP ENSG00000119705 CDS Human protein_coding chr14:78183914 chr14:78183895 synonymous SNV . 0 2 hm5C_associated_SNPs_38069 0 0 1 0 3 SLIRP chr14:78183839 3'AG 78183839 Downstream 57bp
chr14 78183895 78183895 1 + A G STAD 78183914 + 78183894 78183934 41 AAGATTTTTGAGACTGCAGCCTATTAATAAAGTTAACATAA AGGATTTTTGAGACTGCAGCCTATTAATAAAGTTAACATAA < 41bp 1 0.177094467910038 1 0.0678490400314331 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLIRP ENSG00000119705 CDS Human protein_coding chr14:78183914 chr14:78183895 synonymous SNV . 0 2 hm5C_associated_SNPs_38069 0 0 1 0 3 SLIRP chr14:78183845 3'AG 78183845 Downstream 51bp
chr19 59057202 59057202 1 + G A STAD 59057191 + 59057171 59057211 41 ACTGTGTGGAGTGCTCGGAGCCTCTGTGTGAGACCTGTGTA ACTGTGTGGAGTGCTCGGAGCCTCTGTGTGAAACCTGTGTA < 41bp 1 0.0961437788065958 1 0.0517244637012482 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59057191 chr19:59057202 synonymous SNV . 0 32 hm5C_associated_SNPs_38070 0 0 1 0 2 TRIM28 chr19:59057131 3'AG 59057131 Downstream 72bp
chr19 59057202 59057202 1 + G A STAD 59057191 + 59057171 59057211 41 ACTGTGTGGAGTGCTCGGAGCCTCTGTGTGAGACCTGTGTA ACTGTGTGGAGTGCTCGGAGCCTCTGTGTGAAACCTGTGTA < 41bp 1 0.0961437788065958 1 0.0517244637012482 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59057191 chr19:59057202 synonymous SNV . 0 32 hm5C_associated_SNPs_38070 0 0 1 0 2 TRIM28 chr19:59057263 5'GT 59057263 Upstream 62bp
chr19 59057202 59057202 1 + G A STAD 59057205 + 59057185 59057225 41 TCGGAGCCTCTGTGTGAGACCTGTGTAGAGGCGCACCAGCG TCGGAGCCTCTGTGTGAAACCTGTGTAGAGGCGCACCAGCG < 41bp 1 0.517123062407726 1 0.387230575084686 experiment 0.965753875184549 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59057205 chr19:59057202 synonymous SNV . 0 18 hm5C_associated_SNPs_38071 0 0 1 0 2 TRIM28 chr19:59057131 3'AG 59057131 Downstream 72bp
chr19 59057202 59057202 1 + G A STAD 59057205 + 59057185 59057225 41 TCGGAGCCTCTGTGTGAGACCTGTGTAGAGGCGCACCAGCG TCGGAGCCTCTGTGTGAAACCTGTGTAGAGGCGCACCAGCG < 41bp 1 0.517123062407726 1 0.387230575084686 experiment 0.965753875184549 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59057205 chr19:59057202 synonymous SNV . 0 18 hm5C_associated_SNPs_38071 0 0 1 0 2 TRIM28 chr19:59057263 5'GT 59057263 Upstream 62bp
chr1 222806483 222806483 1 + T C STAD 222806499 + 222806479 222806519 41 CTATTGATGCAAACAAGCAACCAGAGACAGCCGCCGAAGAG CTATCGATGCAAACAAGCAACCAGAGACAGCCGCCGAAGAG < 41bp 1 0.572009542235201 1 0.217526316642761 experiment 0.855980915529598 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MIA3 ENSG00000154305 CDS Human protein_coding chr1:222806499 chr1:222806483 synonymous SNV . 0 5 hm5C_associated_SNPs_38072 0 0 1 0 1 MIA3 chr1:222806446 3'AG 222806446 Downstream 38bp
chr2 32828139 32828139 1 + A C STAD 32828127 + 32828107 32828147 41 GACCAGAAGAGAAGTGGAATCCTCAGACCTCAAGCTTTTTG GACCAGAAGAGAAGTGGAATCCTCAGACCTCACGCTTTTTG < 41bp 1 0.111970950943782 1 0.224428415298462 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32828127 chr2:32828139 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_38073 0 0 1 0 2 BIRC6 chr2:32828073 3'AG 32828073 Downstream 67bp
chr2 32828139 32828139 1 + A C STAD 32828127 + 32828107 32828147 41 GACCAGAAGAGAAGTGGAATCCTCAGACCTCAAGCTTTTTG GACCAGAAGAGAAGTGGAATCCTCAGACCTCACGCTTTTTG < 41bp 1 0.111970950943782 1 0.224428415298462 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32828127 chr2:32828139 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_38073 0 0 1 0 2 BIRC6 chr2:32828150 5'GT 32828150 Upstream 12bp
chr6 18213945 18213945 1 + T C STAD 18213957 + 18213937 18213977 41 TGACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAG TGACTTTTCTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAG < 41bp 1 0.436184813499215 1 0.429173529148102 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213957 chr6:18213945 nonsynonymous SNV 1.000 5 9 hm5C_associated_SNPs_38074 0 0 1 0 2 KDM1B chr6:18213887 3'AG 18213887 Downstream 59bp
chr6 18213945 18213945 1 + T C STAD 18213957 + 18213937 18213977 41 TGACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAG TGACTTTTCTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAG < 41bp 1 0.436184813499215 1 0.429173529148102 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213957 chr6:18213945 nonsynonymous SNV 1.000 5 9 hm5C_associated_SNPs_38074 0 0 1 0 2 KDM1B chr6:18214012 5'GT 18214012 Upstream 68bp
chr6 18213945 18213945 1 + T C STAD 18213959 + 18213939 18213979 41 ACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAGGG ACTTTTCTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAGGG < 41bp 1 0.527046584265651 1 0.619614720344543 experiment 0.945906831468699 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213959 chr6:18213945 nonsynonymous SNV 1.000 5 7 hm5C_associated_SNPs_38075 0 0 1 0 2 KDM1B chr6:18213887 3'AG 18213887 Downstream 59bp
chr6 18213945 18213945 1 + T C STAD 18213959 + 18213939 18213979 41 ACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAGGG ACTTTTCTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAGGG < 41bp 1 0.527046584265651 1 0.619614720344543 experiment 0.945906831468699 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213959 chr6:18213945 nonsynonymous SNV 1.000 5 7 hm5C_associated_SNPs_38075 0 0 1 0 2 KDM1B chr6:18214012 5'GT 18214012 Upstream 68bp
chr9 78772059 78772059 1 + A G STAD 78772063 + 78772043 78772083 41 GCACGTGTGTGTGGAGAGCACAGACCGACAAATCAAGTAAT GCACGTGTGTGTGGAGGGCACAGACCGACAAATCAAGTAAT < 41bp 1 0.197528422704169 1 0.166651427745819 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78772063 chr9:78772059 nonsynonymous SNV 0.999 1 17 hm5C_associated_SNPs_38077 0 0 1 0 2 PCSK5 chr9:78771961 3'AG 78771961 Downstream 99bp
chr9 78772059 78772059 1 + A G STAD 78772063 + 78772043 78772083 41 GCACGTGTGTGTGGAGAGCACAGACCGACAAATCAAGTAAT GCACGTGTGTGTGGAGGGCACAGACCGACAAATCAAGTAAT < 41bp 1 0.197528422704169 1 0.166651427745819 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78772063 chr9:78772059 nonsynonymous SNV 0.999 1 17 hm5C_associated_SNPs_38077 0 0 1 0 2 PCSK5 chr9:78772078 5'GT 78772078 Upstream 20bp
chrX 205517 205517 1 + T C STAD 205500 + 205480 205520 41 AACAAGGCCTTGCCCTGCATCACGCGCCCTGTCGTGCTGAA AACAAGGCCTTGCCCTGCATCACGCGCCCTGTCGTGCCGAA < 41bp 1 0.521484675371202 1 0.190605640411377 experiment 0.957030649257596 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:205500 chrX:205517 nonsynonymous SNV 0.015 1 38 hm5C_associated_SNPs_38078 0 0 1 0 1 PLCXD1 chrX:205536 5'GT 205536 Upstream 20bp
chr3 39452321 39452321 1 + A T STAD 39452333 + 39452313 39452353 41 CTTCACTAACCAGATCCAGGCAGCCTTCCGGGAGCCACGGC CTTCACTATCCAGATCCAGGCAGCCTTCCGGGAGCCACGGC < 41bp 1 0.612658018286095 1 0.419751942157745 experiment 0.774683963427811 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPSA ENSG00000168028 CDS Human protein_coding chr3:39452333 chr3:39452321 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_38079 0 0 0 0 1 RPSA chr3:39452245 3'AG 39452245 Downstream 77bp
chr3 39452321 39452321 1 + A T STAD 39452337 + 39452317 39452357 41 ACTAACCAGATCCAGGCAGCCTTCCGGGAGCCACGGCTTCT ACTATCCAGATCCAGGCAGCCTTCCGGGAGCCACGGCTTCT < 41bp 1 0.274535364142705 1 0.071392685174942 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPSA ENSG00000168028 CDS Human protein_coding chr3:39452337 chr3:39452321 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_38080 0 0 0 0 1 RPSA chr3:39452245 3'AG 39452245 Downstream 77bp
chr2 71795359 71795359 1 + T A STAD 71795352 + 71795332 71795372 41 GGGAACTGGGGCACAACGGGCCTCACCTACCCCAAGTTTTC GGGAACTGGGGCACAACGGGCCTCACCAACCCCAAGTTTTC < 41bp 1 0.115086695293018 1 0.0738644003868103 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71795352 chr2:71795359 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_38082 0 0 0 0 1 DYSF chr2:71795302 3'AG 71795302 Downstream 58bp
chr19 49469092 49469092 1 + C G STAD 49469074 + 49469054 49469094 41 GCTCTGGAAGGCGTGAGCCACTTCTTCCGCGAATTGGCCGA GCTCTGGAAGGCGTGAGCCACTTCTTCCGCGAATTGGCGGA < 41bp 1 0.374120143926771 1 0.115731447935104 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469074 chr19:49469092 synonymous SNV . 0 39 hm5C_associated_SNPs_38086 0 0 1 0 2 FTL chr19:49469027 3'AG 49469027 Downstream 66bp
chr19 49469092 49469092 1 + C G STAD 49469074 + 49469054 49469094 41 GCTCTGGAAGGCGTGAGCCACTTCTTCCGCGAATTGGCCGA GCTCTGGAAGGCGTGAGCCACTTCTTCCGCGAATTGGCGGA < 41bp 1 0.374120143926771 1 0.115731447935104 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469074 chr19:49469092 synonymous SNV . 0 39 hm5C_associated_SNPs_38086 0 0 1 0 2 FTL chr19:49469173 5'GT 49469173 Upstream 82bp
chr10 118313341 118313341 1 + C T STAD 118313333 + 118313313 118313353 41 TGGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTT TGGAAGGAGAACCAATGGGACCATTGGATGCATCACAGGTT < 41bp 1 0.125128076183309 1 0.0616498291492462 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313333 chr10:118313341 nonsynonymous SNV 0.430 5 29 hm5C_associated_SNPs_38089 0 0 0 0 1 PNLIP chr10:118313350 5'GT 118313350 Upstream 10bp
chr10 118313341 118313341 1 + C T STAD 118313334 + 118313314 118313354 41 GGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTTG GGAAGGAGAACCAATGGGACCATTGGATGCATCACAGGTTG < 41bp 1 0.452780251739955 1 0.177345603704453 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313334 chr10:118313341 nonsynonymous SNV 0.430 5 28 hm5C_associated_SNPs_38090 0 0 0 0 1 PNLIP chr10:118313350 5'GT 118313350 Upstream 10bp
chr14 89075670 89075670 1 + A G STAD 89075656 + 89075636 89075676 41 GAAAAATGTTTGTTTGTTCACCCAAATTGTAAATATGATGC GAAAAATGTTTGTTTGTTCACCCAAATTGTAAATGTGATGC < 41bp 1 0.489661728084371 1 0.0597593486309052 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89075656 chr14:89075670 nonsynonymous SNV 0.992 4 35 hm5C_associated_SNPs_38091 0 0 1 0 2 ZC3H14 chr14:89075611 3'AG 89075611 Downstream 60bp
chr14 89075670 89075670 1 + A G STAD 89075656 + 89075636 89075676 41 GAAAAATGTTTGTTTGTTCACCCAAATTGTAAATATGATGC GAAAAATGTTTGTTTGTTCACCCAAATTGTAAATGTGATGC < 41bp 1 0.489661728084371 1 0.0597593486309052 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89075656 chr14:89075670 nonsynonymous SNV 0.992 4 35 hm5C_associated_SNPs_38091 0 0 1 0 2 ZC3H14 chr14:89075747 5'GT 89075747 Upstream 78bp
chr13 114292018 114292018 1 + C T STAD 114292033 + 114292013 114292053 41 ATATCCGGAAGCTTCTACAGCCGTCTGTCCTGTGGAACTGC ATATCTGGAAGCTTCTACAGCCGTCTGTCCTGTGGAACTGC < 41bp 1 0.0785065746276663 1 0.0287375748157501 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114292033 chr13:114292018 nonsynonymous SNV . 0 6 hm5C_associated_SNPs_38093 0 0 1 0 1 TFDP1 chr13:114291935 3'AG 114291935 Downstream 84bp
chr13 114292018 114292018 1 + C T STAD 114292034 + 114292014 114292054 41 TATCCGGAAGCTTCTACAGCCGTCTGTCCTGTGGAACTGCG TATCTGGAAGCTTCTACAGCCGTCTGTCCTGTGGAACTGCG < 41bp 1 0.211575124693724 1 0.027423232793808 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114292034 chr13:114292018 nonsynonymous SNV . 0 5 hm5C_associated_SNPs_38094 0 0 1 0 1 TFDP1 chr13:114291935 3'AG 114291935 Downstream 84bp
chr2 73681186 73681186 1 + G A STAD 73681178 + 73681158 73681198 41 AATGCAGAGGAAGAGGAAAGCCGGGTACGAGCACATGGTAA AATGCAGAGGAAGAGGAAAGCCGGGTACAAGCACATGGTAA < 41bp 1 0.273926184971143 1 0.869483351707458 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ALMS1 ENSG00000116127 CDS Human protein_coding chr2:73681178 chr2:73681186 nonsynonymous SNV 0.908 2 29 hm5C_associated_SNPs_38095 0 0 0 0 1 ALMS1 chr2:73681194 5'GT 73681194 Upstream 9bp
chr9 78506228 78506228 1 + C A STAD 78506235 + 78506215 78506255 41 GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT GCAGTCAAAATCGACGGGGGCTTCCCGGAGGCCAACCGTAT < 41bp 1 0.0461326180939786 1 0.0224162638187408 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78506235 chr9:78506228 nonsynonymous SNV 0.999 0 14 hm5C_associated_SNPs_38097 0 0 0 0 1 PCSK5 chr9:78506289 5'GT 78506289 Upstream 62bp
chr1 155583270 155583270 1 + C A STAD 155583273 + 155583253 155583293 41 CCAGCTCACCCCAGGGACACCTCCACCCTCTGCCCTTCATG CCAGCTCACCCCAGGGAAACCTCCACCCTCTGCCCTTCATG < 41bp 1 0.748507084687181 1 0.847449541091919 experiment 0.502985830625639 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MSTO1 ENSG00000125459 CDS Human unprocessed_pseudogene chr1:155583273 chr1:155583270 nonsynonymous SNV 0.060 1 18 hm5C_associated_SNPs_38099 0 0 0 0 3 MSTO1 chr1:155583216 3'AG 155583216 Downstream 55bp
chr1 155583270 155583270 1 + C A STAD 155583273 + 155583253 155583293 41 CCAGCTCACCCCAGGGACACCTCCACCCTCTGCCCTTCATG CCAGCTCACCCCAGGGAAACCTCCACCCTCTGCCCTTCATG < 41bp 1 0.748507084687181 1 0.847449541091919 experiment 0.502985830625639 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155583273 chr1:155583270 nonsynonymous SNV 0.060 1 18 hm5C_associated_SNPs_38099 0 0 0 0 3 MSTO1 chr1:155583253 3'AG 155583253 Downstream 18bp
chr1 155583270 155583270 1 + C A STAD 155583273 + 155583253 155583293 41 CCAGCTCACCCCAGGGACACCTCCACCCTCTGCCCTTCATG CCAGCTCACCCCAGGGAAACCTCCACCCTCTGCCCTTCATG < 41bp 1 0.748507084687181 1 0.847449541091919 experiment 0.502985830625639 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155583273 chr1:155583270 nonsynonymous SNV 0.060 1 18 hm5C_associated_SNPs_38099 0 0 0 0 3 MSTO1 chr1:155583357 5'GT 155583357 Upstream 88bp
chr5 112197085 112197085 1 + T A STAD 112197065 + 112197045 112197085 41 GCTCCTGGGTTGTTGAGACTCTTGTGAAGATGGCTTGCGCT GCTCCTGGGTTGTTGAGACTCTTGTGAAGATGGCTTGCGCA < 41bp 1 0.637791122148351 1 0.204233020544052 experiment 0.724417755703299 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRP19 ENSG00000153037;ENSG00000272869 CDS Human other chr5:112197065 chr5:112197085 synonymous SNV . 0 41 hm5C_associated_SNPs_38101 0 0 1 0 1 SRP19 chr5:112197114 5'GT 112197114 Upstream 30bp
chr2 27449471 27449471 1 + T C STAD 27449451 + 27449431 27449471 41 CTCTGCCCTGGCCAGTAAGGCCACAGGTTATCCACTGGCTT CTCTGCCCTGGCCAGTAAGGCCACAGGTTATCCACTGGCTC < 41bp 1 0.19025141094408 1 0.169943511486053 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27449451 chr2:27449471 nonsynonymous SNV 0.998 5 41 hm5C_associated_SNPs_38102 0 0 1 0 2 CAD chr2:27449393 3'AG 27449393 Downstream 79bp
chr2 27449471 27449471 1 + T C STAD 27449451 + 27449431 27449471 41 CTCTGCCCTGGCCAGTAAGGCCACAGGTTATCCACTGGCTT CTCTGCCCTGGCCAGTAAGGCCACAGGTTATCCACTGGCTC < 41bp 1 0.19025141094408 1 0.169943511486053 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27449451 chr2:27449471 nonsynonymous SNV 0.998 5 41 hm5C_associated_SNPs_38102 0 0 1 0 2 CAD chr2:27449517 5'GT 27449517 Upstream 47bp
chr7 129394914 129394914 1 + G T STAD 129394901 + 129394881 129394921 41 ATGTACCAGACTGTGGTGACCAGCCTCGCCCAGGGCAACGG ATGTACCAGACTGTGGTGACCAGCCTCGCCCAGTGCAACGG < 41bp 1 0.610130549116886 1 0.24925684928894 experiment 0.779738901766227 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NRF1 ENSG00000106459 CDS Human protein_coding chr7:129394901 chr7:129394914 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_38103 0 0 1 0 1 NRF1 chr7:129394858 3'AG 129394858 Downstream 57bp
chr12 27908157 27908157 1 + A G STAD 27908142 + 27908122 27908162 41 AGAATGGGAAAAAAGTAAGACTGAAGCAGACATGGAAGAGT AGAATGGGAAAAAAGTAAGACTGAAGCAGACATGGGAGAGT < 41bp 1 0.606331847562527 1 0.488257825374603 experiment 0.787336304874945 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPS35 ENSG00000061794 CDS Human protein_coding chr12:27908142 chr12:27908157 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_38104 0 0 1 0 1 MRPS35 chr12:27908114 3'AG 27908114 Downstream 44bp
chr12 27908157 27908157 1 + A G STAD 27908148 + 27908128 27908168 41 GGAAAAAAGTAAGACTGAAGCAGACATGGAAGAGTATATAT GGAAAAAAGTAAGACTGAAGCAGACATGGGAGAGTATATAT < 41bp 1 0.493099839652107 1 0.749277651309967 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPS35 ENSG00000061794 CDS Human protein_coding chr12:27908148 chr12:27908157 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_38105 0 0 1 0 1 MRPS35 chr12:27908114 3'AG 27908114 Downstream 44bp
chr12 57627016 57627016 1 + G A STAD 57626998 + 57626978 57627018 41 CTACCGGAAAGGGGTGAAGGCTGTGGACCCCAAGACTGGCC CTACCGGAAAGGGGTGAAGGCTGTGGACCCCAAGACTGACC < 41bp 1 0.583523590569945 1 0.393198519945145 experiment 0.83295281886011 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57626998 chr12:57627016 nonsynonymous SNV 0.995 4 39 hm5C_associated_SNPs_38106 0 0 1 0 1 SHMT2 chr12:57626963 3'AG 57626963 Downstream 54bp
chr12 57627016 57627016 1 + G A STAD 57627007 + 57626987 57627027 41 AGGGGTGAAGGCTGTGGACCCCAAGACTGGCCGGGAGATCC AGGGGTGAAGGCTGTGGACCCCAAGACTGACCGGGAGATCC < 41bp 1 0.331947729770479 1 0.559693038463593 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57627007 chr12:57627016 nonsynonymous SNV 0.995 4 30 hm5C_associated_SNPs_38107 0 0 1 0 1 SHMT2 chr12:57626963 3'AG 57626963 Downstream 54bp
chrX 69519002 69519002 1 + C T STAD 69519014 + 69518994 69519034 41 GCCCATCTCGTGAGAAAGCTCAAATAAATATACGAGAGGAT GCCCATCTTGTGAGAAAGCTCAAATAAATATACGAGAGGAT < 41bp 1 0.154808599578365 1 0.37522479891777 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69519014 chrX:69519002 nonsynonymous SNV 0.999 0 9 hm5C_associated_SNPs_38108 0 0 0 0 2 KIF4A chrX:69518963 3'AG 69518963 Downstream 40bp
chrX 69519002 69519002 1 + C T STAD 69519014 + 69518994 69519034 41 GCCCATCTCGTGAGAAAGCTCAAATAAATATACGAGAGGAT GCCCATCTTGTGAGAAAGCTCAAATAAATATACGAGAGGAT < 41bp 1 0.154808599578365 1 0.37522479891777 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69519014 chrX:69519002 nonsynonymous SNV 0.999 0 9 hm5C_associated_SNPs_38108 0 0 0 0 2 KIF4A chrX:69519052 5'GT 69519052 Upstream 51bp
chr10 35495861 35495861 1 + C T STAD 35495841 + 35495821 35495861 41 AGCTGCCACTGGTGACATGCCAACTTACCAGATCCGAGCTC AGCTGCCACTGGTGACATGCCAACTTACCAGATCCGAGCTT < 41bp 1 0.734598369292187 1 0.358431965112686 experiment 0.530803261415626 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CREM ENSG00000095794 CDS Human protein_coding chr10:35495841 chr10:35495861 nonsynonymous SNV 0.991 3 41 hm5C_associated_SNPs_38116 0 0 1 0 1 CREM chr10:35495823 3'AG 35495823 Downstream 39bp
chr6 133783615 133783615 1 + G A STAD 133783602 + 133783582 133783622 41 CAGACAGGACAGCCCTACAGCTTGCCCACTTACGGTATTTC CAGACAGGACAGCCCTACAGCTTGCCCACTTACAGTATTTC < 41bp 1 0.0685680865909605 1 0.0721545517444611 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133783602 chr6:133783615 nonsynonymous SNV 0.994 4 34 hm5C_associated_SNPs_38117 0 0 0 0 1 EYA4 chr6:133783615 5'GT 133783615 Upstream 1bp
chr3 127335911 127335911 1 + G A STAD 127335929 + 127335909 127335949 41 GGGCCCTGGTTCTGGCTGACCGAGGAGTGTGTCTCATTGAT GGACCCTGGTTCTGGCTGACCGAGGAGTGTGTCTCATTGAT < 41bp 1 0.709145642337718 1 0.769916772842407 experiment 0.581708715324565 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127335929 chr3:127335911 nonsynonymous SNV 0.964 4 3 hm5C_associated_SNPs_38118 0 0 1 0 1 MCM2 chr3:127335961 5'GT 127335961 Upstream 51bp
chr22 38021904 38021904 1 + T G STAD 38021903 + 38021883 38021923 41 CCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAG CCCTGGCGAGCAGGCCAGCCCGGAGCAGCCCAGTGCCTCAG < 41bp 1 0.727046859253188 1 0.699412107467651 experiment 0.545906281493624 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38021903 chr22:38021904 synonymous SNV . 0 22 hm5C_associated_SNPs_38119 0 0 1 0 1 GGA1 chr22:38021956 5'GT 38021956 Upstream 53bp
chr11 64032904 64032904 1 + A G STAD 64032900 + 64032880 64032920 41 CATCAGCGGAAGGCAGTCACCCTCACCCGCCGCCTGCTGGA CATCAGCGGAAGGCAGTCACCCTCGCCCGCCGCCTGCTGGA < 41bp 1 0.143216921570265 1 0.0946547389030457 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64032900 chr11:64032904 nonsynonymous SNV 0.906 0 25 hm5C_associated_SNPs_38120 0 0 0 0 1 PLCB3 chr11:64032974 5'GT 64032974 Upstream 71bp
chr6 133783599 133783599 1 + C A STAD 133783602 + 133783582 133783622 41 CAGACAGGACAGCCCTACAGCTTGCCCACTTACGGTATTTC CAGACAGGACAGCCCTAAAGCTTGCCCACTTACGGTATTTC < 41bp 1 0.115808852804516 1 0.0436031818389893 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133783602 chr6:133783599 stopgain 1.000 1 18 hm5C_associated_SNPs_38122 0 0 0 0 1 EYA4 chr6:133783615 5'GT 133783615 Upstream 17bp
chr3 185324165 185324165 1 + G A STAD 185324153 + 185324133 185324173 41 AGAAGGCTGTAATAGAAGACCAGGTGGCCGTCGCCATAGCA AGAAGGCTGTAATAGAAGACCAGGTGGCCGTCACCATAGCA < 41bp 1 0.645320770073676 1 0.521380960941315 experiment 0.709358459852647 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SENP2 ENSG00000163904 CDS Human protein_coding chr3:185324153 chr3:185324165 nonsynonymous SNV 0.997 1 33 hm5C_associated_SNPs_38125 0 0 1 0 1 SENP2 chr3:185324118 3'AG 185324118 Downstream 48bp
chr18 74620354 74620354 1 + G A STAD 74620335 + 74620315 74620355 41 AGCCTCGATAGATGACAGCACTGTAGACCAGCAGAGCATGC AGCCTCGATAGATGACAGCACTGTAGACCAGCAGAGCATAC < 41bp 1 0.46399761582666 1 0.193026214838028 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74620335 chr18:74620354 nonsynonymous SNV 0.183 0 40 hm5C_associated_SNPs_38129 0 0 1 0 1 ZNF236 chr18:74620276 3'AG 74620276 Downstream 79bp
chr7 892494 892494 1 + G A STAD 892492 + 892472 892512 41 CAATTTCTTTTCGTTCTTGCCCGTGTTGAACTGGGCAAGCA CAATTTCTTTTCGTTCTTGCCCATGTTGAACTGGGCAAGCA < 41bp 1 0.190253416044094 1 0.0531162619590759 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SUN1 ENSG00000164828 CDS Human protein_coding chr7:892492 chr7:892494 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_38130 0 0 1 0 3 SUN1 chr7:892447 3'AG 892447 Downstream 48bp
chr7 892494 892494 1 + G A STAD 892492 + 892472 892512 41 CAATTTCTTTTCGTTCTTGCCCGTGTTGAACTGGGCAAGCA CAATTTCTTTTCGTTCTTGCCCATGTTGAACTGGGCAAGCA < 41bp 1 0.190253416044094 1 0.0531162619590759 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SUN1 ENSG00000164828 CDS Human protein_coding chr7:892492 chr7:892494 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_38130 0 0 1 0 3 SUN1 chr7:892450 3'AG 892450 Downstream 45bp
chr7 892494 892494 1 + G A STAD 892492 + 892472 892512 41 CAATTTCTTTTCGTTCTTGCCCGTGTTGAACTGGGCAAGCA CAATTTCTTTTCGTTCTTGCCCATGTTGAACTGGGCAAGCA < 41bp 1 0.190253416044094 1 0.0531162619590759 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SUN1 ENSG00000164828 CDS Human protein_coding chr7:892492 chr7:892494 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_38130 0 0 1 0 3 SUN1 chr7:892589 5'GT 892589 Upstream 96bp
chr19 48220237 48220237 1 + G A STAD 48220221 + 48220201 48220241 41 GCAACGCCCTCGTCGTGGACCCGGACAAGCCCTTCCGCAAA GCAACGCCCTCGTCGTGGACCCGGACAAGCCCTTCCACAAA < 41bp 1 0.532796174668547 1 0.658066928386688 experiment 0.934407650662905 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EHD2 ENSG00000024422 CDS Human protein_coding chr19:48220221 chr19:48220237 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_38132 0 0 0 0 1 EHD2 chr19:48220273 5'GT 48220273 Upstream 37bp
chr2 70096881 70096881 1 + G A STAD 70096880 + 70096860 70096900 41 CGTTGGACAGGTTTTAACTTCGGCTTCGACCTACTTGTAAC CGTTGGACAGGTTTTAACTTCAGCTTCGACCTACTTGTAAC < 41bp 1 0.528127628397042 1 0.14831730723381 experiment 0.943744743205916 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GMCL1 ENSG00000087338 CDS Human protein_coding chr2:70096880 chr2:70096881 nonsynonymous SNV 0.992 2 22 hm5C_associated_SNPs_38133 0 0 1 0 1 GMCL1 chr2:70096851 3'AG 70096851 Downstream 31bp
chr16 1395258 1395258 1 + G A STAD 1395256 + 1395236 1395276 41 CCCTCCCACCACAGGGACAGCCGCTCTCTGGCCCTGGCTGG CCCTCCCACCACAGGGACAGCCACTCTCTGGCCCTGGCTGG < 41bp 1 0.0991717429079716 1 0.0993765592575073 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1395256 chr16:1395258 nonsynonymous SNV 0.931 1 23 hm5C_associated_SNPs_38134 0 0 0 0 1 BAIAP3 chr16:1395250 3'AG 1395250 Downstream 9bp
chr12 107237716 107237716 1 + C T STAD 107237701 + 107237681 107237721 41 TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTCAAAGA TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTTAAAGA < 41bp 1 0.125862435158548 1 0.283031851053238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107237701 chr12:107237716 synonymous SNV . 0 36 hm5C_associated_SNPs_38135 0 0 0 1 2 RIC8B chr12:107237630 3'AG 107237630 Downstream 87bp
chr12 107237716 107237716 1 + C T STAD 107237701 + 107237681 107237721 41 TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTCAAAGA TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTTAAAGA < 41bp 1 0.125862435158548 1 0.283031851053238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107237701 chr12:107237716 synonymous SNV . 0 36 hm5C_associated_SNPs_38135 0 0 0 1 2 RIC8B chr12:107237725 5'GT 107237725 Upstream 10bp
chr11 68204455 68204455 1 + G A STAD 68204450 + 68204430 68204470 41 CCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG CCCCGACTGTATCGACGGCTCCGACAAGCTCATGTGTGGTG < 41bp 1 0.108792920319756 1 0.105674684047699 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204450 chr11:68204455 nonsynonymous SNV 0.875 4 26 hm5C_associated_SNPs_38136 1 0 1 0 2 LRP5 chr11:68204357 3'AG 68204357 Downstream 99bp
chr11 68204455 68204455 1 + G A STAD 68204450 + 68204430 68204470 41 CCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG CCCCGACTGTATCGACGGCTCCGACAAGCTCATGTGTGGTG < 41bp 1 0.108792920319756 1 0.105674684047699 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204450 chr11:68204455 nonsynonymous SNV 0.875 4 26 hm5C_associated_SNPs_38136 1 0 1 0 2 LRP5 chr11:68204467 5'GT 68204467 Upstream 13bp
chr11 68204455 68204455 1 + G A STAD 68204451 + 68204431 68204471 41 CCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTGA CCCGACTGTATCGACGGCTCCGACAAGCTCATGTGTGGTGA < 41bp 1 0.539620163757533 1 0.61544668674469 experiment 0.920759672484935 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204451 chr11:68204455 nonsynonymous SNV 0.875 4 25 hm5C_associated_SNPs_38137 1 0 1 0 2 LRP5 chr11:68204357 3'AG 68204357 Downstream 99bp
chr11 68204455 68204455 1 + G A STAD 68204451 + 68204431 68204471 41 CCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTGA CCCGACTGTATCGACGGCTCCGACAAGCTCATGTGTGGTGA < 41bp 1 0.539620163757533 1 0.61544668674469 experiment 0.920759672484935 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204451 chr11:68204455 nonsynonymous SNV 0.875 4 25 hm5C_associated_SNPs_38137 1 0 1 0 2 LRP5 chr11:68204467 5'GT 68204467 Upstream 13bp
chr20 47605105 47605105 1 + G T STAD 47605120 + 47605100 47605140 41 GAAGAGTATCTCTCAAGCATCTATGAAGAGATAGAAGGCAA GAAGATTATCTCTCAAGCATCTATGAAGAGATAGAAGGCAA < 41bp 1 0.205805250585215 1 0.117898851633072 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47605120 chr20:47605105 nonsynonymous SNV 0.961 1 6 hm5C_associated_SNPs_38145 0 0 1 0 1 ARFGEF2 chr20:47605028 3'AG 47605028 Downstream 78bp
chr19 10200705 10200705 1 + C T STAD 10200688 + 10200668 10200708 41 TTGCCTGCTCCTCCTGCGACCACGTCTGGTGGCGCCGCGTG TTGCCTGCTCCTCCTGCGACCACGTCTGGTGGCGCCGTGTG < 41bp 1 0.579225095002988 1 0.336541652679443 experiment 0.841549809994024 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10200688 chr19:10200705 nonsynonymous SNV 0.950 0 38 hm5C_associated_SNPs_38146 0 0 1 0 1 C19orf66 chr19:10200723 5'GT 10200723 Upstream 19bp
chr3 193336664 193336664 1 + C T STAD 193336676 + 193336656 193336696 41 AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATCGTG AGGTTCTCTGGAAGAAACGGCGTTTAGAGCAACAGATCGTG < 41bp 1 0.0505443014235245 1 0.045075386762619 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336676 chr3:193336664 nonsynonymous SNV 0.941 0 9 hm5C_associated_SNPs_38147 0 0 1 0 2 OPA1 chr3:193336658 3'AG 193336658 Downstream 7bp
chr3 193336664 193336664 1 + C T STAD 193336676 + 193336656 193336696 41 AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATCGTG AGGTTCTCTGGAAGAAACGGCGTTTAGAGCAACAGATCGTG < 41bp 1 0.0505443014235245 1 0.045075386762619 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336676 chr3:193336664 nonsynonymous SNV 0.941 0 9 hm5C_associated_SNPs_38147 0 0 1 0 2 OPA1 chr3:193336725 5'GT 193336725 Upstream 62bp
chr6 7578041 7578041 1 + C A STAD 7578027 + 7578007 7578047 41 TGCAGGATTATGAGCTCCAGCTGGCCTCATACACCTCAGGA TGCAGGATTATGAGCTCCAGCTGGCCTCATACACATCAGGA < 41bp 1 0.218473126181494 1 0.411549299955368 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DSP ENSG00000096696 CDS Human protein_coding chr6:7578027 chr6:7578041 synonymous SNV . 0 35 hm5C_associated_SNPs_38148 0 0 1 0 2 DSP chr6:7578012 3'AG 7578012 Downstream 30bp
chr6 7578041 7578041 1 + C A STAD 7578027 + 7578007 7578047 41 TGCAGGATTATGAGCTCCAGCTGGCCTCATACACCTCAGGA TGCAGGATTATGAGCTCCAGCTGGCCTCATACACATCAGGA < 41bp 1 0.218473126181494 1 0.411549299955368 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DSP ENSG00000096696 CDS Human protein_coding chr6:7578027 chr6:7578041 synonymous SNV . 0 35 hm5C_associated_SNPs_38148 0 0 1 0 2 DSP chr6:7578119 5'GT 7578119 Upstream 79bp
chr3 183885455 183885455 1 + G A STAD 183885453 + 183885433 183885473 41 CCTGAATCAGGGTTGGAGGTCCGTGACCGCATGTGGCTCAA CCTGAATCAGGGTTGGAGGTCCATGACCGCATGTGGCTCAA < 41bp 1 0.176716392273865 1 0.395664870738983 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DVL3 ENSG00000161202 CDS Human protein_coding chr3:183885453 chr3:183885455 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_38149 0 0 1 0 2 DVL3 chr3:183885368 3'AG 183885368 Downstream 88bp
chr3 183885455 183885455 1 + G A STAD 183885453 + 183885433 183885473 41 CCTGAATCAGGGTTGGAGGTCCGTGACCGCATGTGGCTCAA CCTGAATCAGGGTTGGAGGTCCATGACCGCATGTGGCTCAA < 41bp 1 0.176716392273865 1 0.395664870738983 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DVL3 ENSG00000161202 CDS Human protein_coding chr3:183885453 chr3:183885455 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_38149 0 0 1 0 2 DVL3 chr3:183885499 5'GT 183885499 Upstream 45bp
chr16 31131804 31131804 1 + G A STAD 31131787 + 31131767 31131807 41 GAGCAGCCTGAGCGCAAGATCACTCGCAACCAAAAGCGCAA GAGCAGCCTGAGCGCAAGATCACTCGCAACCAAAAGCACAA < 41bp 1 0.269649952599056 1 0.0729206502437592 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KAT8 ENSG00000103510 CDS Human protein_coding chr16:31131787 chr16:31131804 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_38150 0 0 1 0 1 KAT8 chr16:31131835 5'GT 31131835 Upstream 32bp
chr19 2271925 2271925 1 + G A STAD 2271919 + 2271899 2271939 41 GCAGCCTCTACATCGAGATCCCGGGCGGCGCGCTGCCCGAG GCAGCCTCTACATCGAGATCCCGGGCAGCGCGCTGCCCGAG < 41bp 1 0.694926408577948 1 0.875389039516449 experiment 0.610147182844104 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control OAZ1 ENSG00000104904 CDS Human protein_coding chr19:2271919 chr19:2271925 nonsynonymous SNV 0.062 3 27 hm5C_associated_SNPs_38151 0 0 1 0 1 OAZ1 chr19:2271953 5'GT 2271953 Upstream 29bp
chr11 130011397 130011397 1 + T C STAD 130011408 + 130011388 130011428 41 TTCAGGTCATTGACGAGACTCTGGATGTTAAGGAAATGATT TTCAGGTCACTGACGAGACTCTGGATGTTAAGGAAATGATT < 41bp 1 0.791027155534142 1 0.775727033615112 experiment 0.417945688931717 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130011408 chr11:130011397 nonsynonymous SNV 0.954 2 10 hm5C_associated_SNPs_38152 0 0 1 0 2 APLP2 chr11:130011393 3'AG 130011393 Downstream 5bp
chr11 130011397 130011397 1 + T C STAD 130011408 + 130011388 130011428 41 TTCAGGTCATTGACGAGACTCTGGATGTTAAGGAAATGATT TTCAGGTCACTGACGAGACTCTGGATGTTAAGGAAATGATT < 41bp 1 0.791027155534142 1 0.775727033615112 experiment 0.417945688931717 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130011408 chr11:130011397 nonsynonymous SNV 0.954 2 10 hm5C_associated_SNPs_38152 0 0 1 0 2 APLP2 chr11:130011467 5'GT 130011467 Upstream 71bp
chr4 26407849 26407849 1 + C T STAD 26407834 + 26407814 26407854 41 ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCAT ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTTTTCAT < 41bp 1 0.272238900120393 1 0.235794544219971 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBPJ ENSG00000168214 CDS Human protein_coding chr4:26407834 chr4:26407849 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_38153 0 0 1 0 2 RBPJ chr4:26407797 3'AG 26407797 Downstream 53bp
chr4 26407849 26407849 1 + C T STAD 26407834 + 26407814 26407854 41 ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCAT ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTTTTCAT < 41bp 1 0.272238900120393 1 0.235794544219971 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBPJ ENSG00000168214 CDS Human protein_coding chr4:26407834 chr4:26407849 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_38153 0 0 1 0 2 RBPJ chr4:26407892 5'GT 26407892 Upstream 44bp
chr19 10561292 10561292 1 + G A STAD 10561299 + 10561279 10561319 41 GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA GCGGTCCCCGCTGAGCGGCCCCACCCCTGTCTGCAAGGCCA < 41bp 1 0.0280309612525327 1 0.0551583170890808 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561299 chr19:10561292 nonsynonymous SNV 0.836 0 14 hm5C_associated_SNPs_38154 0 0 0 0 2 PDE4A chr19:10561279 3'AG 10561279 Downstream 14bp
chr19 10561292 10561292 1 + G A STAD 10561299 + 10561279 10561319 41 GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA GCGGTCCCCGCTGAGCGGCCCCACCCCTGTCTGCAAGGCCA < 41bp 1 0.0280309612525327 1 0.0551583170890808 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561299 chr19:10561292 nonsynonymous SNV 0.836 0 14 hm5C_associated_SNPs_38154 0 0 0 0 2 PDE4A chr19:10561328 5'GT 10561328 Upstream 37bp
chr12 4716511 4716511 1 + G A STAD 4716505 + 4716485 4716525 41 TTATTAAGGTGCTGGGTCTGCCGCCAGCCGGCTTCATTCAG TTATTAAGGTGCTGGGTCTGCCGCCAACCGGCTTCATTCAG < 41bp 1 0.234499260309086 1 0.248800873756409 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4716505 chr12:4716511 nonsynonymous SNV 0.108 0 27 hm5C_associated_SNPs_38155 0 0 0 0 2 DYRK4 chr12:4716493 3'AG 4716493 Downstream 19bp
chr12 4716511 4716511 1 + G A STAD 4716505 + 4716485 4716525 41 TTATTAAGGTGCTGGGTCTGCCGCCAGCCGGCTTCATTCAG TTATTAAGGTGCTGGGTCTGCCGCCAACCGGCTTCATTCAG < 41bp 1 0.234499260309086 1 0.248800873756409 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4716505 chr12:4716511 nonsynonymous SNV 0.108 0 27 hm5C_associated_SNPs_38155 0 0 0 0 2 DYRK4 chr12:4716553 5'GT 4716553 Upstream 43bp
chr8 1904965 1904965 1 + G A STAD 1904975 + 1904955 1904995 41 CAAATTCATCGTCCTGGCCACGGCTCTGCACGAGAAAGACA CAAATTCATCATCCTGGCCACGGCTCTGCACGAGAAAGACA < 41bp 1 0.178862130929348 1 0.0616053640842438 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1904975 chr8:1904965 nonsynonymous SNV 0.001 1 11 hm5C_associated_SNPs_38156 0 0 1 0 1 ARHGEF10 chr8:1904915 3'AG 1904915 Downstream 51bp
chr11 33094125 33094125 1 + A G STAD 33094118 + 33094098 33094138 41 TCAGTCCAGTTCAGAGAGAGCTGGAGGAAGTTGCTATTAAA TCAGTCCAGTTCAGAGAGAGCTGGAGGGAGTTGCTATTAAA < 41bp 1 0.777976330793236 1 0.670221149921417 experiment 0.444047338413529 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33094118 chr11:33094125 nonsynonymous SNV 0.991 3 28 hm5C_associated_SNPs_38157 0 0 0 0 1 TCP11L1 chr11:33094199 5'GT 33094199 Upstream 75bp
chr18 2667021 2667021 1 + A C STAD 2667024 + 2667004 2667044 41 ATGCCAGTGAAGGACAAAATCCTTTGCGTAAGTATCCCATT ATGCCAGTGAAGGACAACATCCTTTGCGTAAGTATCCCATT < 41bp 1 0.0365994015254653 1 0.0569356977939606 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMCHD1 ENSG00000101596 CDS Human protein_coding chr18:2667024 chr18:2667021 nonsynonymous SNV 0.997 4 18 hm5C_associated_SNPs_38158 1 0 1 0 1 SMCHD1 chr18:2667030 5'GT 2667030 Upstream 10bp
chr3 25542770 25542770 1 + A C STAD 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACCAGGAATCGATGCCAATCCTGTCGACTCCAGAAGTGCTT < 41bp 1 0.255770313499094 1 0.105762988328934 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542770 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_38159 0 0 1 0 2 RARB chr3:25542673 3'AG 25542673 Downstream 98bp
chr3 25542770 25542770 1 + A C STAD 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACCAGGAATCGATGCCAATCCTGTCGACTCCAGAAGTGCTT < 41bp 1 0.255770313499094 1 0.105762988328934 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542770 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_38159 0 0 1 0 2 RARB chr3:25542814 5'GT 25542814 Upstream 45bp
chr12 124074954 124074954 1 + G A STAD 124074965 + 124074945 124074985 41 GTAAAGCACGAACAGGAATACATGGAAGTCCGGGAGAGAAT GTAAAGCACAAACAGGAATACATGGAAGTCCGGGAGAGAAT < 41bp 1 0.575940662087802 1 0.170207172632217 experiment 0.848118675824395 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED2 ENSG00000086598 CDS Human protein_coding chr12:124074965 chr12:124074954 nonsynonymous SNV 0.997 2 10 hm5C_associated_SNPs_38161 0 0 1 0 2 TMED2 chr12:124074889 3'AG 124074889 Downstream 66bp
chr12 124074954 124074954 1 + G A STAD 124074965 + 124074945 124074985 41 GTAAAGCACGAACAGGAATACATGGAAGTCCGGGAGAGAAT GTAAAGCACAAACAGGAATACATGGAAGTCCGGGAGAGAAT < 41bp 1 0.575940662087802 1 0.170207172632217 experiment 0.848118675824395 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED2 ENSG00000086598 CDS Human protein_coding chr12:124074965 chr12:124074954 nonsynonymous SNV 0.997 2 10 hm5C_associated_SNPs_38161 0 0 1 0 2 TMED2 chr12:124074996 5'GT 124074996 Upstream 43bp
chr11 110333089 110333089 1 + G A STAD 110333093 + 110333073 110333113 41 TACAGATCACGGTTGGGCTGCCAAATCTGTTTGACAAAATC TACAGATCACGGTTGGACTGCCAAATCTGTTTGACAAAATC < 41bp 1 0.202680478733365 1 0.170680284500122 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FDX1 ENSG00000137714 CDS Human protein_coding chr11:110333093 chr11:110333089 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_38163 0 0 1 0 1 FDX1 chr11:110333078 3'AG 110333078 Downstream 12bp
chr11 110333089 110333089 1 + G A STAD 110333094 + 110333074 110333114 41 ACAGATCACGGTTGGGCTGCCAAATCTGTTTGACAAAATCT ACAGATCACGGTTGGACTGCCAAATCTGTTTGACAAAATCT < 41bp 1 0.215545733253297 1 0.379631042480469 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FDX1 ENSG00000137714 CDS Human protein_coding chr11:110333094 chr11:110333089 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_38164 0 0 1 0 1 FDX1 chr11:110333078 3'AG 110333078 Downstream 12bp
chr2 70096947 70096947 1 + C T STAD 70096964 + 70096944 70096984 41 CAGCCATGTAGCGGATCTGTCAGTTTACAGCCTCGAAGGAG CAGTCATGTAGCGGATCTGTCAGTTTACAGCCTCGAAGGAG < 41bp 1 0.409984393323799 1 0.190473675727844 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GMCL1 ENSG00000087338 CDS Human protein_coding chr2:70096964 chr2:70096947 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_38166 0 0 1 0 2 GMCL1 chr2:70096851 3'AG 70096851 Downstream 97bp
chr2 70096947 70096947 1 + C T STAD 70096964 + 70096944 70096984 41 CAGCCATGTAGCGGATCTGTCAGTTTACAGCCTCGAAGGAG CAGTCATGTAGCGGATCTGTCAGTTTACAGCCTCGAAGGAG < 41bp 1 0.409984393323799 1 0.190473675727844 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GMCL1 ENSG00000087338 CDS Human protein_coding chr2:70096964 chr2:70096947 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_38166 0 0 1 0 2 GMCL1 chr2:70096996 5'GT 70096996 Upstream 50bp
chr15 41554990 41554990 1 + T G STAD 41554985 + 41554965 41555005 41 TAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCGC TAAACTTCCGTGGATTCATGCGAACGTTGGCTCATTTCCGC < 41bp 1 0.301681333199461 1 0.383933186531067 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHP1 ENSG00000187446 CDS Human protein_coding chr15:41554985 chr15:41554990 synonymous SNV . 0 26 hm5C_associated_SNPs_38172 0 0 1 0 2 CHP1 chr15:41554954 3'AG 41554954 Downstream 37bp
chr15 41554990 41554990 1 + T G STAD 41554985 + 41554965 41555005 41 TAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCGC TAAACTTCCGTGGATTCATGCGAACGTTGGCTCATTTCCGC < 41bp 1 0.301681333199461 1 0.383933186531067 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHP1 ENSG00000187446 CDS Human protein_coding chr15:41554985 chr15:41554990 synonymous SNV . 0 26 hm5C_associated_SNPs_38172 0 0 1 0 2 CHP1 chr15:41555081 5'GT 41555081 Upstream 92bp
chr21 30422460 30422460 1 + A C STAD 30422456 + 30422436 30422476 41 TAACAAACACATAAAGTTTCCGGAAATCTTAGATTTGGCTC TAACAAACACATAAAGTTTCCGGACATCTTAGATTTGGCTC < 41bp 1 0.407988954614947 1 0.472364336252213 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP16 ENSG00000156256 CDS Human protein_coding chr21:30422456 chr21:30422460 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_38175 0 0 1 0 2 USP16 chr21:30422413 3'AG 30422413 Downstream 48bp
chr21 30422460 30422460 1 + A C STAD 30422456 + 30422436 30422476 41 TAACAAACACATAAAGTTTCCGGAAATCTTAGATTTGGCTC TAACAAACACATAAAGTTTCCGGACATCTTAGATTTGGCTC < 41bp 1 0.407988954614947 1 0.472364336252213 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP16 ENSG00000156256 CDS Human protein_coding chr21:30422456 chr21:30422460 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_38175 0 0 1 0 2 USP16 chr21:30422499 5'GT 30422499 Upstream 40bp
chr22 24468452 24468452 1 + C T STAD 24468439 + 24468419 24468459 41 CTCTGTGCCACCAGCAGCAGCTCCAAAACCCAGCGGAGGAA CTCTGTGCCACCAGCAGCAGCTCCAAAACCCAGTGGAGGAA < 41bp 1 0.414583159205801 1 0.896915435791016 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24468439 chr22:24468452 nonsynonymous SNV 0.957 0 34 hm5C_associated_SNPs_38176 0 0 0 0 1 CABIN1 chr22:24468460 5'GT 24468460 Upstream 9bp
chr20 30526969 30526969 1 + C T STAD 30526975 + 30526955 30526995 41 AGGGAGAAGCGAGTCGGGGGCTTTGACCTCATGTGGAATGA AGGGAGAAGCGAGTTGGGGGCTTTGACCTCATGTGGAATGA < 41bp 1 0.206309313218407 1 0.107047021389008 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30526975 chr20:30526969 synonymous SNV . 0 15 hm5C_associated_SNPs_38177 0 0 0 0 1 TTLL9 chr20:30526945 3'AG 30526945 Downstream 25bp
chr16 4383520 4383520 1 + G A STAD 4383504 + 4383484 4383524 41 GGGCAACGGGGACCTGCCTCCAGTGCCCAGTGCCTCGGTAA GGGCAACGGGGACCTGCCTCCAGTGCCCAGTGCCTCAGTAA < 41bp 1 0.544161591701251 1 0.864855766296387 experiment 0.911676816597499 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GLIS2 ENSG00000126603 CDS Human protein_coding chr16:4383504 chr16:4383520 synonymous SNV . 0 37 hm5C_associated_SNPs_38178 0 0 0 0 1 GLIS2 chr16:4383520 5'GT 4383520 Upstream 1bp
chr3 183854515 183854515 1 + A C STAD 183854500 + 183854480 183854520 41 TGTCTTTTGTTGCTGGAAAGCTGCTCAAATCAAAGAACATT TGTCTTTTGTTGCTGGAAAGCTGCTCAAATCAAAGCACATT < 41bp 1 0.393134203646239 1 0.339789092540741 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183854500 chr3:183854515 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_38179 0 0 1 0 1 EIF2B5 chr3:183854524 5'GT 183854524 Upstream 10bp
chr1 214794191 214794191 1 + G A STAD 214794185 + 214794165 214794205 41 TGGGGAACAAGAGGTGACTCCAAGTCGATCAACTTTGCAAA TGGGGAACAAGAGGTGACTCCAAGTCAATCAACTTTGCAAA < 41bp 1 0.315306458924209 1 0.144644975662231 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214794185 chr1:214794191 nonsynonymous SNV 0.001 1 27 hm5C_associated_SNPs_38180 0 0 1 0 1 CENPF chr1:214794289 5'GT 214794289 Upstream 99bp
chr1 214794191 214794191 1 + G A STAD 214794190 + 214794170 214794210 41 AACAAGAGGTGACTCCAAGTCGATCAACTTTGCAAATAGGG AACAAGAGGTGACTCCAAGTCAATCAACTTTGCAAATAGGG < 41bp 1 0.0715058426142679 1 0.218247324228287 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214794190 chr1:214794191 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_38181 0 0 1 0 1 CENPF chr1:214794289 5'GT 214794289 Upstream 99bp
chr17 66251928 66251928 1 + G T STAD 66251944 + 66251924 66251964 41 GGAAGAAGCTGACCGGCGCCCTCTAAACCTTTGCCCTATCT GGAATAAGCTGACCGGCGCCCTCTAAACCTTTGCCCTATCT < 41bp 1 0.629928458053915 1 0.808209657669067 experiment 0.74014308389217 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control AMZ2 ENSG00000196704 CDS Human protein_coding chr17:66251944 chr17:66251928 stopgain 0.997 1 5 hm5C_associated_SNPs_38182 0 0 1 0 2 AMZ2 chr17:66251841 3'AG 66251841 Downstream 88bp
chr17 66251928 66251928 1 + G T STAD 66251944 + 66251924 66251964 41 GGAAGAAGCTGACCGGCGCCCTCTAAACCTTTGCCCTATCT GGAATAAGCTGACCGGCGCCCTCTAAACCTTTGCCCTATCT < 41bp 1 0.629928458053915 1 0.808209657669067 experiment 0.74014308389217 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control AMZ2 ENSG00000196704 CDS Human protein_coding chr17:66251944 chr17:66251928 stopgain 0.997 1 5 hm5C_associated_SNPs_38182 0 0 1 0 2 AMZ2 chr17:66252017 5'GT 66252017 Upstream 90bp
chr9 133738166 133738166 1 + A G STAD 133738171 + 133738151 133738191 41 TCTACGTCTCCTCCGAGAGCCGCTTCAACACCCTGGCCGAG TCTACGTCTCCTCCGGGAGCCGCTTCAACACCCTGGCCGAG < 41bp 1 0.124391585337043 1 0.197139710187912 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133738171 chr9:133738166 nonsynonymous SNV 0.997 3 16 hm5C_associated_SNPs_38183 0 0 1 0 1 ABL1 chr9:133738150 3'AG 133738150 Downstream 17bp
chr11 94554964 94554964 1 + G A STAD 94554949 + 94554929 94554969 41 ACCGGGTGCTTCACCAGGAACTTCAGGGTTACTACGACAAT ACCGGGTGCTTCACCAGGAACTTCAGGGTTACTACAACAAT < 41bp 1 0.317321025121331 1 0.139560341835022 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94554949 chr11:94554964 nonsynonymous SNV 0.996 1 36 hm5C_associated_SNPs_38184 0 0 1 0 1 AMOTL1 chr11:94554987 5'GT 94554987 Upstream 24bp
chr2 131801887 131801887 1 + G A STAD 131801875 + 131801855 131801895 41 AGGCCAGCATCTGGCAGGACCTGCTCCGCCGCGACGTGTTG AGGCCAGCATCTGGCAGGACCTGCTCCGCCGCAACGTGTTG < 41bp 1 0.165115317961873 1 0.087157815694809 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF4 ENSG00000136002 CDS Human protein_coding chr2:131801875 chr2:131801887 nonsynonymous SNV 0.994 2 33 hm5C_associated_SNPs_38185 0 0 0 0 1 ARHGEF4 chr2:131801872 3'AG 131801872 Downstream 16bp
chr5 179195995 179195995 1 + T C STAD 179195992 + 179195972 179196012 41 CCGCTGTAATGAAGCAGCATCAGTTGCTTTTGGACCAACAG CCGCTGTAATGAAGCAGCATCAGCTGCTTTTGGACCAACAG < 41bp 1 0.176041088171902 1 0.67532342672348 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAML1 ENSG00000161021 CDS Human protein_coding chr5:179195992 chr5:179195995 synonymous SNV . 0 24 hm5C_associated_SNPs_38186 0 0 1 0 1 MAML1 chr5:179196090 5'GT 179196090 Upstream 96bp
chr7 98591318 98591318 1 + C T STAD 98591325 + 98591305 98591345 41 CCCTGGAAGGCATCGTCGATCAGATGGTCTGGTTCAGAGAA CCCTGGAAGGCATTGTCGATCAGATGGTCTGGTTCAGAGAA < 41bp 1 0.276876101426539 1 0.348194301128387 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98591325 chr7:98591318 synonymous SNV . 0 14 hm5C_associated_SNPs_38187 0 0 1 0 1 TRRAP chr7:98591360 5'GT 98591360 Upstream 43bp
chr7 70252212 70252212 1 + G A STAD 70252228 + 70252208 70252248 41 GTTCGGCCACAAGGATGGCCCCAGTGTGCAGAACTTTAGCA GTTCAGCCACAAGGATGGCCCCAGTGTGCAGAACTTTAGCA < 41bp 1 0.140760061247058 1 0.0729379951953888 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:70252228 chr7:70252212 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_38188 0 0 1 0 1 AUTS2 chr7:70252195 3'AG 70252195 Downstream 18bp
chr19 1453554 1453554 1 + C A STAD 1453535 + 1453515 1453555 41 GGGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCT GGGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGAT < 41bp 1 0.18435139487232 1 0.456391543149948 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453535 chr19:1453554 nonsynonymous SNV 0.919 1 40 hm5C_associated_SNPs_38189 0 0 0 0 1 APC2 chr19:1453610 5'GT 1453610 Upstream 57bp
chr19 1453554 1453554 1 + C A STAD 1453536 + 1453516 1453556 41 GGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCTT GGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGATT < 41bp 1 0.15730620188093 1 0.590364575386047 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453536 chr19:1453554 nonsynonymous SNV 0.919 1 39 hm5C_associated_SNPs_38190 0 0 0 0 1 APC2 chr19:1453610 5'GT 1453610 Upstream 57bp
chr19 1453554 1453554 1 + C A STAD 1453540 + 1453520 1453560 41 GCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCTTTGGG GCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGATTTGGG < 41bp 1 0.0109742518321837 1 0.127044320106506 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453540 chr19:1453554 nonsynonymous SNV 0.919 1 35 hm5C_associated_SNPs_38191 0 0 0 0 1 APC2 chr19:1453610 5'GT 1453610 Upstream 57bp
chr19 1453554 1453554 1 + C A STAD 1453541 + 1453521 1453561 41 CCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCTTTGGGG CCCAGTACACGGCTCCGGGCCCTCCAAGGACAGATTTGGGG < 41bp 1 0.0115519773263249 1 0.117984354496002 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453541 chr19:1453554 nonsynonymous SNV 0.919 1 34 hm5C_associated_SNPs_38192 0 0 0 0 1 APC2 chr19:1453610 5'GT 1453610 Upstream 57bp
chr16 53504328 53504328 1 + T G STAD 53504331 + 53504311 53504351 41 TGGAGGGATAACATTCTTCCCTGTCCAAGTCAATGTTGGGG TGGAGGGATAACATTCTGCCCTGTCCAAGTCAATGTTGGGG < 41bp 1 0.0733025844758525 1 0.0846821069717407 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RBL2 ENSG00000103479 CDS Human protein_coding chr16:53504331 chr16:53504328 nonsynonymous SNV 0.995 4 18 hm5C_associated_SNPs_38193 0 0 1 0 1 RBL2 chr16:53504295 3'AG 53504295 Downstream 34bp
chr12 52636852 52636852 1 + G A STAD 52636840 + 52636820 52636860 41 GGGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGAT GGGAAGCATGGGGACGACCTCCGGAATACCCGAAATGAGAT < 41bp 1 0.621313568440678 1 0.789536416530609 experiment 0.757372863118645 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636840 chr12:52636852 synonymous SNV . 0 33 hm5C_associated_SNPs_38194 0 0 0 0 2 KRT7 chr12:52636796 3'AG 52636796 Downstream 57bp
chr12 52636852 52636852 1 + G A STAD 52636840 + 52636820 52636860 41 GGGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGAT GGGAAGCATGGGGACGACCTCCGGAATACCCGAAATGAGAT < 41bp 1 0.621313568440678 1 0.789536416530609 experiment 0.757372863118645 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636840 chr12:52636852 synonymous SNV . 0 33 hm5C_associated_SNPs_38194 0 0 0 0 2 KRT7 chr12:52636921 5'GT 52636921 Upstream 70bp
chr12 52636852 52636852 1 + G A STAD 52636841 + 52636821 52636861 41 GGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGATT GGAAGCATGGGGACGACCTCCGGAATACCCGAAATGAGATT < 41bp 1 0.631901874845483 1 0.886632084846497 experiment 0.736196250309034 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636841 chr12:52636852 synonymous SNV . 0 32 hm5C_associated_SNPs_38195 0 0 0 0 2 KRT7 chr12:52636796 3'AG 52636796 Downstream 57bp
chr12 52636852 52636852 1 + G A STAD 52636841 + 52636821 52636861 41 GGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGATT GGAAGCATGGGGACGACCTCCGGAATACCCGAAATGAGATT < 41bp 1 0.631901874845483 1 0.886632084846497 experiment 0.736196250309034 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636841 chr12:52636852 synonymous SNV . 0 32 hm5C_associated_SNPs_38195 0 0 0 0 2 KRT7 chr12:52636921 5'GT 52636921 Upstream 70bp
chr11 65826323 65826323 1 + G A STAD 65826306 + 65826286 65826326 41 TCCTCCTCTTGACAGAAAAACCGGAAGCGTAGGAACCGAAA TCCTCCTCTTGACAGAAAAACCGGAAGCGTAGGAACCAAAA < 41bp 1 0.609241926839444 1 0.460388630628586 experiment 0.781516146321112 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65826306 chr11:65826323 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_38196 0 0 1 0 1 SF3B2 chr11:65826301 3'AG 65826301 Downstream 23bp
chr21 38853084 38853084 1 + C T STAD 38853089 + 38853069 38853109 41 GAAAAGTGGATGGATCGTTACGAAATTGACTCCTTGATAGG GAAAAGTGGATGGATTGTTACGAAATTGACTCCTTGATAGG < 41bp 1 0.652624730599466 1 0.835838794708252 experiment 0.694750538801068 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38853089 chr21:38853084 nonsynonymous SNV 0.999 4 16 hm5C_associated_SNPs_38197 0 0 1 0 1 DYRK1A chr21:38853128 5'GT 38853128 Upstream 45bp
chr15 89849327 89849327 1 + G A STAD 89849336 + 89849316 89849356 41 CATTTTTCCACGAGCTGGTGCAGACAGCTCTGCCATCAGGC CATTTTTCCACAAGCTGGTGCAGACAGCTCTGCCATCAGGC < 41bp 1 0.0891829123904439 1 0.431749820709229 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FANCI ENSG00000140525 CDS Human protein_coding chr15:89849336 chr15:89849327 nonsynonymous SNV 0.975 5 12 hm5C_associated_SNPs_38198 0 0 1 0 3 FANCI chr15:89849238 3'AG 89849238 Downstream 90bp
chr15 89849327 89849327 1 + G A STAD 89849336 + 89849316 89849356 41 CATTTTTCCACGAGCTGGTGCAGACAGCTCTGCCATCAGGC CATTTTTCCACAAGCTGGTGCAGACAGCTCTGCCATCAGGC < 41bp 1 0.0891829123904439 1 0.431749820709229 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FANCI ENSG00000140525 CDS Human protein_coding chr15:89849336 chr15:89849327 nonsynonymous SNV 0.975 5 12 hm5C_associated_SNPs_38198 0 0 1 0 3 FANCI chr15:89849241 3'AG 89849241 Downstream 87bp
chr15 89849327 89849327 1 + G A STAD 89849336 + 89849316 89849356 41 CATTTTTCCACGAGCTGGTGCAGACAGCTCTGCCATCAGGC CATTTTTCCACAAGCTGGTGCAGACAGCTCTGCCATCAGGC < 41bp 1 0.0891829123904439 1 0.431749820709229 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FANCI ENSG00000140525 CDS Human protein_coding chr15:89849336 chr15:89849327 nonsynonymous SNV 0.975 5 12 hm5C_associated_SNPs_38198 0 0 1 0 3 FANCI chr15:89849425 5'GT 89849425 Upstream 99bp
chr10 17277206 17277206 1 + G T STAD 17277192 + 17277172 17277212 41 AGTCCCTGGAACGCCAGATGCGTGAAATGGAAGAGAACTTT AGTCCCTGGAACGCCAGATGCGTGAAATGGAAGATAACTTT < 41bp 1 0.634968162243528 1 0.370715618133545 experiment 0.730063675512945 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277192 chr10:17277206 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_38199 0 0 1 0 1 VIM chr10:17277168 3'AG 17277168 Downstream 39bp
chr11 86947710 86947710 1 + T C STAD 86947706 + 86947686 86947726 41 TTGTTTTGCATCACAGCTGCCATGTACATGTTCTTTTTCAG TTGTTTTGCATCACAGCTGCCATGCACATGTTCTTTTTCAG < 41bp 1 0.0363521855726596 1 0.0440269410610199 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM135 ENSG00000166575 CDS Human protein_coding chr11:86947706 chr11:86947710 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_38201 0 0 1 0 2 TMEM135 chr11:86947680 3'AG 86947680 Downstream 31bp
chr11 86947710 86947710 1 + T C STAD 86947706 + 86947686 86947726 41 TTGTTTTGCATCACAGCTGCCATGTACATGTTCTTTTTCAG TTGTTTTGCATCACAGCTGCCATGCACATGTTCTTTTTCAG < 41bp 1 0.0363521855726596 1 0.0440269410610199 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM135 ENSG00000166575 CDS Human protein_coding chr11:86947706 chr11:86947710 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_38201 0 0 1 0 2 TMEM135 chr11:86947726 5'GT 86947726 Upstream 17bp
chr10 134016247 134016247 1 + T G STAD 134016266 + 134016246 134016286 41 TTTGTCACCCCGGGGGCGGGCCGCTTCGTCCCTCGGAAAAC TGTGTCACCCCGGGGGCGGGCCGCTTCGTCCCTCGGAAAAC < 41bp 1 0.207615975765075 1 0.3196981549263 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134016266 chr10:134016247 nonsynonymous SNV 0.005 0 2 hm5C_associated_SNPs_38202 0 0 0 0 1 DPYSL4 chr10:134016150 3'AG 134016150 Downstream 98bp
chr7 94043236 94043236 1 + C T STAD 94043239 + 94043219 94043259 41 GAAAAGGTGAACAGGGTCCCCCTGGTCCTCCAGGCTTCCAG GAAAAGGTGAACAGGGTTCCCCTGGTCCTCCAGGCTTCCAG < 41bp 1 0.223020638860068 1 0.106045335531235 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94043239 chr7:94043236 nonsynonymous SNV 0.983 4 18 hm5C_associated_SNPs_38203 0 0 0 0 1 COL1A2 chr7:94043259 5'GT 94043259 Upstream 24bp
chr6 109763764 109763764 1 + C T STAD 109763767 + 109763747 109763787 41 TCCATGCCGAATACAATCGACAGAAGGACATCTACCTAGCA TCCATGCCGAATACAATTGACAGAAGGACATCTACCTAGCA < 41bp 1 0.624984966883234 1 0.408196300268173 experiment 0.750030066233532 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109763767 chr6:109763764 stopgain 0.332 1 18 hm5C_associated_SNPs_38204 0 0 1 0 2 SMPD2 chr6:109763746 3'AG 109763746 Downstream 19bp
chr6 109763764 109763764 1 + C T STAD 109763767 + 109763747 109763787 41 TCCATGCCGAATACAATCGACAGAAGGACATCTACCTAGCA TCCATGCCGAATACAATTGACAGAAGGACATCTACCTAGCA < 41bp 1 0.624984966883234 1 0.408196300268173 experiment 0.750030066233532 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109763767 chr6:109763764 stopgain 0.332 1 18 hm5C_associated_SNPs_38204 0 0 1 0 2 SMPD2 chr6:109763828 5'GT 109763828 Upstream 65bp
chr11 61898025 61898025 1 + G C STAD 61898007 + 61897987 61898027 41 AGTGTTGTCCGCAGGGCGAGCAGAAGGCTTGCCAAGAAGAC AGTGTTGTCCGCAGGGCGAGCAGAAGGCTTGCCAAGAACAC < 41bp 1 0.658306751568013 1 0.709370315074921 experiment 0.683386496863974 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61898007 chr11:61898025 nonsynonymous SNV 0.404 2 39 hm5C_associated_SNPs_38207 0 0 1 0 1 INCENP chr11:61898062 5'GT 61898062 Upstream 38bp
chr11 61898025 61898025 1 + G C STAD 61898018 + 61897998 61898038 41 CAGGGCGAGCAGAAGGCTTGCCAAGAAGACTGCCGAAGAGC CAGGGCGAGCAGAAGGCTTGCCAAGAACACTGCCGAAGAGC < 41bp 1 0.158065249453241 1 0.163791745901108 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61898018 chr11:61898025 nonsynonymous SNV 0.404 2 28 hm5C_associated_SNPs_38208 0 0 1 0 1 INCENP chr11:61898062 5'GT 61898062 Upstream 38bp
chr17 78350178 78350178 1 + G A STAD 78350171 + 78350151 78350191 41 TCCTGATATCAGCCGTTTTGCAACATCGCTCGTGGACAATT TCCTGATATCAGCCGTTTTGCAACATCACTCGTGGACAATT < 41bp 1 0.18137390220674 1 0.15517857670784 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78350171 chr17:78350178 synonymous SNV . 0 28 hm5C_associated_SNPs_38209 0 0 1 0 1 RNF213 chr17:78350101 3'AG 78350101 Downstream 78bp
chr14 103802217 103802217 1 + G T STAD 103802231 + 103802211 103802251 41 TCAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATG TCAACCTCAGCGTGTCAGACCAGTTCTATCGCTACAAGATG < 41bp 1 0.160832955378041 1 0.0617451369762421 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103802231 chr14:103802217 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_38210 0 0 1 0 1 EIF5 chr14:103802269 5'GT 103802269 Upstream 53bp
chr8 145535505 145535505 1 + C T STAD 145535495 + 145535475 145535515 41 GGCTCCTGCCAGCCCCATGGCCTCCCCCGGCGGGAGCATAG GGCTCCTGCCAGCCCCATGGCCTCCCCCGGTGGGAGCATAG < 41bp 1 0.0279241463439867 1 0.0934485793113708 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSF1 ENSG00000185122 CDS Human protein_coding chr8:145535495 chr8:145535505 synonymous SNV . 0 31 hm5C_associated_SNPs_38211 0 0 1 0 1 HSF1 chr8:145535522 5'GT 145535522 Upstream 18bp
chr5 112164562 112164562 1 + A G STAD 112164560 + 112164540 112164580 41 GATTAATTTGCAGGTTATTGCGAGTGTTTTGAGGAATTTGT GATTAATTTGCAGGTTATTGCGGGTGTTTTGAGGAATTTGT < 41bp 1 0.253589540685559 1 0.480774372816086 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APC ENSG00000134982;ENSG00000258864 CDS Human other chr5:112164560 chr5:112164562 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_38212 0 0 1 0 1 APC chr5:112164553 3'AG 112164553 Downstream 10bp
chr2 158152294 158152294 1 + A G STAD 158152276 + 158152256 158152296 41 GTAGAAAGAAAGTGGCCTGTCCAGTAATCGAAGTCATCAAT GTAGAAAGAAAGTGGCCTGTCCAGTAATCGAAGTCATCGAT < 41bp 1 0.266381531786191 1 0.258391857147217 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GALNT5 ENSG00000136542 CDS Human protein_coding chr2:158152276 chr2:158152294 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_38213 0 0 0 0 1 GALNT5 chr2:158152310 5'GT 158152310 Upstream 17bp
chr7 149423093 149423093 1 + C T STAD 149423103 + 149423083 149423123 41 CCAGCAGCACCGACTGGGACCTGGATTTTGGGAGTCCTGTG CCAGCAGCACTGACTGGGACCTGGATTTTGGGAGTCCTGTG < 41bp 1 0.777204687145623 1 0.810831069946289 experiment 0.445590625708754 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149423103 chr7:149423093 synonymous SNV . 0 11 hm5C_associated_SNPs_38215 0 0 0 0 1 KRBA1 chr7:149423151 5'GT 149423151 Upstream 59bp
chr19 39870619 39870619 1 + C T STAD 39870630 + 39870610 39870650 41 TCACGGAGACGCAGAAGAAACGGCTGCTATCCTGGAAACAG TCACGGAGATGCAGAAGAAACGGCTGCTATCCTGGAAACAG < 41bp 1 0.645955591336087 1 0.403398454189301 experiment 0.708088817327826 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39870630 chr19:39870619 nonsynonymous SNV 0.998 3 10 hm5C_associated_SNPs_38216 0 0 0 0 1 SAMD4B chr19:39870606 3'AG 39870606 Downstream 14bp
chrX 47774350 47774350 1 + A G STAD 47774348 + 47774328 47774368 41 AAATTTGGAATTAAGCCTTCCCAGAGGAGAATTTCTGGGAA AAATTTGGAATTAAGCCTTCCCGGAGGAGAATTTCTGGGAA < 41bp 1 0.349687806257878 1 0.591449856758118 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF81 ENSG00000197779 CDS Human protein_coding chrX:47774348 chrX:47774350 nonsynonymous SNV 0.525 0 23 hm5C_associated_SNPs_38217 0 0 1 0 1 ZNF81 chrX:47774323 3'AG 47774323 Downstream 28bp
chr14 103802238 103802238 1 + A G STAD 103802231 + 103802211 103802251 41 TCAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATG TCAACCGCAGCGTGTCAGACCAGTTCTGTCGCTACAAGATG < 41bp 1 0.209003480637926 1 0.0598872303962708 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103802231 chr14:103802238 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_38218 0 0 1 0 1 EIF5 chr14:103802269 5'GT 103802269 Upstream 32bp
chr7 138944059 138944059 1 + G A STAD 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TTGAGATGAAGAAGCGGAAGCAGAAAGAGGAAGGGGAAAAG < 41bp 1 0.458810283241104 1 0.396406710147858 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944059 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_38219 0 0 1 0 2 UBN2 chr7:138944013 3'AG 138944013 Downstream 47bp
chr7 138944059 138944059 1 + G A STAD 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TTGAGATGAAGAAGCGGAAGCAGAAAGAGGAAGGGGAAAAG < 41bp 1 0.458810283241104 1 0.396406710147858 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944059 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_38219 0 0 1 0 2 UBN2 chr7:138944116 5'GT 138944116 Upstream 58bp
chr11 44626950 44626950 1 + G A STAD 44626956 + 44626936 44626976 41 CCCAGGTGACGGCCGGGGCCCTCTTCTACTTCAACATGGGC CCCAGGTGACGGCCAGGGCCCTCTTCTACTTCAACATGGGC < 41bp 1 0.0977942301550112 1 0.0273120403289795 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CD82 ENSG00000085117 CDS Human protein_coding chr11:44626956 chr11:44626950 nonsynonymous SNV 0.004 5 15 hm5C_associated_SNPs_38220 0 0 1 0 2 CD82 chr11:44626905 3'AG 44626905 Downstream 46bp
chr11 44626950 44626950 1 + G A STAD 44626956 + 44626936 44626976 41 CCCAGGTGACGGCCGGGGCCCTCTTCTACTTCAACATGGGC CCCAGGTGACGGCCAGGGCCCTCTTCTACTTCAACATGGGC < 41bp 1 0.0977942301550112 1 0.0273120403289795 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CD82 ENSG00000085117 CDS Human protein_coding chr11:44626956 chr11:44626950 nonsynonymous SNV 0.004 5 15 hm5C_associated_SNPs_38220 0 0 1 0 2 CD82 chr11:44626979 5'GT 44626979 Upstream 30bp
chr8 121259946 121259946 1 + C A STAD 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGATATA < 41bp 1 0.0630766027049377 1 0.0982012748718262 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259946 synonymous SNV . 0 37 hm5C_associated_SNPs_38221 0 0 0 0 2 COL14A1 chr8:121259852 3'AG 121259852 Downstream 95bp
chr8 121259946 121259946 1 + C A STAD 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGATATA < 41bp 1 0.0630766027049377 1 0.0982012748718262 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259946 synonymous SNV . 0 37 hm5C_associated_SNPs_38221 0 0 0 0 2 COL14A1 chr8:121259974 5'GT 121259974 Upstream 29bp
chr8 121259946 121259946 1 + C A STAD 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGATATAGAAT < 41bp 1 0.354479797959067 1 0.127969592809677 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259946 synonymous SNV . 0 33 hm5C_associated_SNPs_38222 0 0 0 0 2 COL14A1 chr8:121259852 3'AG 121259852 Downstream 95bp
chr8 121259946 121259946 1 + C A STAD 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGATATAGAAT < 41bp 1 0.354479797959067 1 0.127969592809677 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259946 synonymous SNV . 0 33 hm5C_associated_SNPs_38222 0 0 0 0 2 COL14A1 chr8:121259974 5'GT 121259974 Upstream 29bp
chr7 69064858 69064858 1 + G A STAD 69064849 + 69064829 69064869 41 TCCTCCGCCCCGTCCCGGCCCAGACCCCCGCGGAGGAAGCG TCCTCCGCCCCGTCCCGGCCCAGACCCCCACGGAGGAAGCG < 41bp 1 0.157779019297432 1 0.028564989566803 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69064849 chr7:69064858 synonymous SNV . 0 30 hm5C_associated_SNPs_38224 0 0 0 0 1 AUTS2 chr7:69064948 5'GT 69064948 Upstream 91bp
chr3 148871345 148871345 1 + C T STAD 148871349 + 148871329 148871369 41 TTCATAGGCTTGAAAGCCATCTGTCACTTTAAAAACCACAT TTCATAGGCTTGAAAGTCATCTGTCACTTTAAAAACCACAT < 41bp 1 0.130143188789344 1 0.0812898278236389 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HPS3 ENSG00000163755 CDS Human protein_coding chr3:148871349 chr3:148871345 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_38226 0 0 0 0 2 HPS3 chr3:148871281 3'AG 148871281 Downstream 65bp
chr3 148871345 148871345 1 + C T STAD 148871349 + 148871329 148871369 41 TTCATAGGCTTGAAAGCCATCTGTCACTTTAAAAACCACAT TTCATAGGCTTGAAAGTCATCTGTCACTTTAAAAACCACAT < 41bp 1 0.130143188789344 1 0.0812898278236389 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HPS3 ENSG00000163755 CDS Human protein_coding chr3:148871349 chr3:148871345 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_38226 0 0 0 0 2 HPS3 chr3:148871435 5'GT 148871435 Upstream 91bp
chr18 21474921 21474921 1 + G A STAD 21474924 + 21474904 21474944 41 ACCTGGCCACCATGGGCGAGCAGCTCCGCCTGGTCAAGTCT ACCTGGCCACCATGGGCAAGCAGCTCCGCCTGGTCAAGTCT < 41bp 1 0.220863281069259 1 0.386789321899414 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21474924 chr18:21474921 nonsynonymous SNV 0.969 0 18 hm5C_associated_SNPs_38227 0 0 0 0 1 LAMA3 chr18:21474871 3'AG 21474871 Downstream 51bp
chrX 21995195 21995195 1 + C T STAD 21995205 + 21995185 21995225 41 ACCCATAGTGCGAGGAGGAGCCATCGACAGATACTGGCCCA ACCCATAGTGTGAGGAGGAGCCATCGACAGATACTGGCCCA < 41bp 1 0.162886213739375 1 0.214223593473434 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMS ENSG00000102172 CDS Human protein_coding chrX:21995205 chrX:21995195 stopgain 0.997 1 11 hm5C_associated_SNPs_38228 0 0 1 0 1 SMS chrX:21995179 3'AG 21995179 Downstream 17bp
chr9 116764939 116764939 1 + A C STAD 116764935 + 116764915 116764955 41 ACCTCAGGGGAGGGAGCCTCCCAAAGCAGTGAGTACTTTTT ACCTCAGGGGAGGGAGCCTCCCAACGCAGTGAGTACTTTTT < 41bp 1 0.0648596854528009 1 0.263130068778992 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116764935 chr9:116764939 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_38229 0 0 0 0 2 ZNF618 chr9:116764904 3'AG 116764904 Downstream 36bp
chr9 116764939 116764939 1 + A C STAD 116764935 + 116764915 116764955 41 ACCTCAGGGGAGGGAGCCTCCCAAAGCAGTGAGTACTTTTT ACCTCAGGGGAGGGAGCCTCCCAACGCAGTGAGTACTTTTT < 41bp 1 0.0648596854528009 1 0.263130068778992 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116764935 chr9:116764939 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_38229 0 0 0 0 2 ZNF618 chr9:116764942 5'GT 116764942 Upstream 4bp
chr3 49212180 49212180 1 + C T STAD 49212179 + 49212159 49212199 41 CCAATTCCATTGACAGGGGGCCGCCAGGGCAAGCTCCCGGT CCAATTCCATTGACAGGGGGCTGCCAGGGCAAGCTCCCGGT < 41bp 1 0.179813886477598 1 0.120189249515533 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212179 chr3:49212180 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_38230 0 0 1 0 1 KLHDC8B chr3:49212175 3'AG 49212175 Downstream 6bp
chr16 28884771 28884771 1 + C T STAD 28884777 + 28884757 28884797 41 TTCCTATCCAGAACCGACCACCTCCCATGACCCACCCCAGC TTCCTATCCAGAACTGACCACCTCCCATGACCCACCCCAGC < 41bp 1 0.0202277409846206 1 0.261127561330795 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28884777 chr16:28884771 nonsynonymous SNV 0.982 0 15 hm5C_associated_SNPs_38231 0 0 1 0 1 SH2B1 chr16:28884768 3'AG 28884768 Downstream 4bp
chr19 11472121 11472121 1 + G A STAD 11472113 + 11472093 11472133 41 GTGGCCGCCGCGCGCCGCGCCTTCCCCTGCAAGGATGCGGC GTGGCCGCCGCGCGCCGCGCCTTCCCCTACAAGGATGCGGC < 41bp 1 0.126302175298771 1 0.154127478599548 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11472113 chr19:11472121 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_38236 0 0 0 0 1 PLPPR2 chr19:11472164 5'GT 11472164 Upstream 44bp
chr19 45850756 45850756 1 + G A STAD 45850750 + 45850730 45850770 41 ACAGCCTGGCCTCCCTGTTCCCCAGCGAGGAGGAGGAGAGG ACAGCCTGGCCTCCCTGTTCCCCAGCAAGGAGGAGGAGAGG < 41bp 1 0.208336922796277 1 0.0523311793804169 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KLC3 ENSG00000104892 CDS Human protein_coding chr19:45850750 chr19:45850756 nonsynonymous SNV 0.987 2 27 hm5C_associated_SNPs_38237 0 0 0 0 3 KLC3 chr19:45850705 3'AG 45850705 Downstream 52bp
chr19 45850756 45850756 1 + G A STAD 45850750 + 45850730 45850770 41 ACAGCCTGGCCTCCCTGTTCCCCAGCGAGGAGGAGGAGAGG ACAGCCTGGCCTCCCTGTTCCCCAGCAAGGAGGAGGAGAGG < 41bp 1 0.208336922796277 1 0.0523311793804169 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KLC3 ENSG00000104892 CDS Human protein_coding chr19:45850750 chr19:45850756 nonsynonymous SNV 0.987 2 27 hm5C_associated_SNPs_38237 0 0 0 0 3 KLC3 chr19:45850708 3'AG 45850708 Downstream 49bp
chr19 45850756 45850756 1 + G A STAD 45850750 + 45850730 45850770 41 ACAGCCTGGCCTCCCTGTTCCCCAGCGAGGAGGAGGAGAGG ACAGCCTGGCCTCCCTGTTCCCCAGCAAGGAGGAGGAGAGG < 41bp 1 0.208336922796277 1 0.0523311793804169 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KLC3 ENSG00000104892 CDS Human protein_coding chr19:45850750 chr19:45850756 nonsynonymous SNV 0.987 2 27 hm5C_associated_SNPs_38237 0 0 0 0 3 KLC3 chr19:45850774 5'GT 45850774 Upstream 19bp
chr11 8706388 8706388 1 + T C STAD 8706393 + 8706373 8706413 41 ACAGACACGGGTGAATGCTGCTAAAAACAAGACTGGGGCTG ACAGACACGGGTGAACGCTGCTAAAAACAAGACTGGGGCTG < 41bp 1 0.645856667279139 1 0.700012683868408 experiment 0.708286665441722 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL27A ENSG00000166441 CDS Human protein_coding chr11:8706393 chr11:8706388 synonymous SNV . 0 16 hm5C_associated_SNPs_38238 0 0 1 0 1 RPL27A chr11:8706439 5'GT 8706439 Upstream 52bp
chr2 69379378 69379378 1 + G A STAD 69379375 + 69379355 69379395 41 CTGGCTCTCCTCTGGTGGTTCTGGCCCCTCTGCTGCACTGT CTGGCTCTCCTCTGGTGGTTCTGACCCCTCTGCTGCACTGT < 41bp 1 0.210605567973881 1 0.435444444417953 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANTXR1 ENSG00000169604 CDS Human protein_coding chr2:69379375 chr2:69379378 stopgain 0.997 1 24 hm5C_associated_SNPs_38240 0 0 1 0 2 ANTXR1 chr2:69379301 3'AG 69379301 Downstream 78bp
chr2 69379378 69379378 1 + G A STAD 69379375 + 69379355 69379395 41 CTGGCTCTCCTCTGGTGGTTCTGGCCCCTCTGCTGCACTGT CTGGCTCTCCTCTGGTGGTTCTGACCCCTCTGCTGCACTGT < 41bp 1 0.210605567973881 1 0.435444444417953 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANTXR1 ENSG00000169604 CDS Human protein_coding chr2:69379375 chr2:69379378 stopgain 0.997 1 24 hm5C_associated_SNPs_38240 0 0 1 0 2 ANTXR1 chr2:69379396 5'GT 69379396 Upstream 19bp
chr11 490498 490498 1 + C T STAD 490505 + 490485 490525 41 GCACCGTCGGCAACGGGGACCAGCACCCACTGGGGCTGGAC GCACCGTCGGCAATGGGGACCAGCACCCACTGGGGCTGGAC < 41bp 1 0.551129405517927 1 0.693546831607819 experiment 0.897741188964146 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTDSS2 ENSG00000174915 CDS Human protein_coding chr11:490505 chr11:490498 synonymous SNV . 0 14 hm5C_associated_SNPs_38242 0 0 1 0 1 PTDSS2 chr11:490420 3'AG 490420 Downstream 79bp
chr6 30610593 30610593 1 + G A STAD 30610600 + 30610580 30610620 41 AACAGGGCCCCTCGCCGCGCCACACCTCCAGCCCACCCACC AACAGGGCCCCTCACCGCGCCACACCTCCAGCCCACCCACC < 41bp 1 0.25178646077198 1 0.291051238775253 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ATAT1 ENSG00000137343 CDS Human protein_coding chr6:30610600 chr6:30610593 nonsynonymous SNV 0.969 2 14 hm5C_associated_SNPs_38243 0 0 0 0 1 ATAT1 chr6:30610545 3'AG 30610545 Downstream 49bp
chr10 31812911 31812911 1 + G C STAD 31812931 + 31812911 31812951 41 GAATGACTCTGATTCTACACCGCCCAAAAAGAAAATGCGGA CAATGACTCTGATTCTACACCGCCCAAAAAGAAAATGCGGA < 41bp 1 0.226395630710021 1 0.261093884706497 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZEB1 ENSG00000148516 CDS Human protein_coding chr10:31812931 chr10:31812911 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_38248 0 0 1 0 1 ZEB1 chr10:31812861 3'AG 31812861 Downstream 51bp
chr5 112868662 112868662 1 + C T STAD 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA TGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA < 41bp 1 0.546470508142566 1 0.136386334896088 experiment 0.907058983714868 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868662 synonymous SNV . 0 1 hm5C_associated_SNPs_38249 0 0 1 0 2 YTHDC2 chr5:112868576 3'AG 112868576 Downstream 87bp
chr5 112868662 112868662 1 + C T STAD 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA TGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA < 41bp 1 0.546470508142566 1 0.136386334896088 experiment 0.907058983714868 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868662 synonymous SNV . 0 1 hm5C_associated_SNPs_38249 0 0 1 0 2 YTHDC2 chr5:112868742 5'GT 112868742 Upstream 81bp
chr1 162740230 162740230 1 + C G STAD 162740248 + 162740228 162740268 41 TTCGCCCTGACTACCAGGAGCCATCCAGGCTGATACGAAAA TTGGCCCTGACTACCAGGAGCCATCCAGGCTGATACGAAAA < 41bp 1 0.0156303743089615 1 0.0588248670101166 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162740248 chr1:162740230 nonsynonymous SNV 0.999 1 3 hm5C_associated_SNPs_38250 0 0 0 0 1 DDR2 chr1:162740302 5'GT 162740302 Upstream 73bp
chr14 24505773 24505773 1 + T C STAD 24505774 + 24505754 24505794 41 GTCGGTGCGGTTGGCCAGCTCCGGGATGACCCGCCGGGACC GTCGGTGCGGTTGGCCAGCCCCGGGATGACCCGCCGGGACC < 41bp 1 0.696347651262841 1 0.758513808250427 experiment 0.607304697474318 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DHRS4L1 ENSG00000225766 ncRNA_exonic Human processed_transcript chr14:24505774 chr14:24505773 . . 0 20 hm5C_associated_SNPs_38252 0 0 0 0 1 DHRS4L1 chr14:24505837 5'GT 24505837 Upstream 65bp
chr9 134026004 134026004 1 + T G STAD 134026009 + 134025989 134026029 41 TGTGGCTTCTACAGATTGCACACTTTCAGAAGGAGTTGGAA TGTGGCTTCTACAGAGTGCACACTTTCAGAAGGAGTTGGAA < 41bp 1 0.093445736122898 1 0.0390708744525909 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NUP214 ENSG00000126883 CDS Human protein_coding chr9:134026009 chr9:134026004 nonsynonymous SNV 0.993 4 16 hm5C_associated_SNPs_38253 0 0 1 0 1 NUP214 chr9:134026003 3'AG 134026003 Downstream 2bp
chr19 6374319 6374319 1 + C T STAD 6374323 + 6374303 6374343 41 CCCCGGCCAGACCCTGCTCTCCTCCGTGCACGTGCTGGACC CCCCGGCCAGACCCTGTTCTCCTCCGTGCACGTGCTGGACC < 41bp 1 0.253686518145088 1 0.112341076135635 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALKBH7 ENSG00000125652 CDS Human protein_coding chr19:6374323 chr19:6374319 nonsynonymous SNV 0.073 4 17 hm5C_associated_SNPs_38254 0 0 1 0 1 ALKBH7 chr19:6374387 5'GT 6374387 Upstream 69bp
chr1 45973942 45973942 1 + G A STAD 45973929 + 45973909 45973949 41 TCATTGCTGACTACGAGGTGCACCCCAACCGACGCCCCAAG TCATTGCTGACTACGAGGTGCACCCCAACCGACACCCCAAG < 41bp 1 0.202773185743365 1 0.0484766662120819 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMACHC ENSG00000132763 CDS Human protein_coding chr1:45973929 chr1:45973942 nonsynonymous SNV 0.978 4 34 hm5C_associated_SNPs_38255 0 0 1 0 2 MMACHC chr1:45973884 3'AG 45973884 Downstream 59bp
chr1 45973942 45973942 1 + G A STAD 45973929 + 45973909 45973949 41 TCATTGCTGACTACGAGGTGCACCCCAACCGACGCCCCAAG TCATTGCTGACTACGAGGTGCACCCCAACCGACACCCCAAG < 41bp 1 0.202773185743365 1 0.0484766662120819 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMACHC ENSG00000132763 CDS Human protein_coding chr1:45973929 chr1:45973942 nonsynonymous SNV 0.978 4 34 hm5C_associated_SNPs_38255 0 0 1 0 2 MMACHC chr1:45974036 5'GT 45974036 Upstream 95bp
chr10 17277192 17277192 1 + C T STAD 17277176 + 17277156 17277196 41 CACCCCCTGCAGAATGAGTCCCTGGAACGCCAGATGCGTGA CACCCCCTGCAGAATGAGTCCCTGGAACGCCAGATGTGTGA < 41bp 1 0.116698719459131 1 0.090015172958374 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277176 chr10:17277192 nonsynonymous SNV 1.000 5 37 hm5C_associated_SNPs_38265 0 0 1 0 1 VIM chr10:17277168 3'AG 17277168 Downstream 25bp
chr10 17277192 17277192 1 + C T STAD 17277185 + 17277165 17277205 41 CAGAATGAGTCCCTGGAACGCCAGATGCGTGAAATGGAAGA CAGAATGAGTCCCTGGAACGCCAGATGTGTGAAATGGAAGA < 41bp 1 0.399953513885809 1 0.528451383113861 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277185 chr10:17277192 nonsynonymous SNV 1.000 5 28 hm5C_associated_SNPs_38266 0 0 1 0 1 VIM chr10:17277168 3'AG 17277168 Downstream 25bp
chrX 107909801 107909801 1 + C A STAD 107909782 + 107909762 107909802 41 GCGAAAAAGGCAAACCCGGTCAAGATGGTATTCCTGGACCA GCGAAAAAGGCAAACCCGGTCAAGATGGTATTCCTGGACAA < 41bp 1 0.764459958012196 1 0.759025573730469 experiment 0.471080083975607 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107909782 chrX:107909801 nonsynonymous SNV 0.999 4 40 hm5C_associated_SNPs_38267 0 0 1 0 2 COL4A5 chrX:107909726 3'AG 107909726 Downstream 76bp
chrX 107909801 107909801 1 + C A STAD 107909782 + 107909762 107909802 41 GCGAAAAAGGCAAACCCGGTCAAGATGGTATTCCTGGACCA GCGAAAAAGGCAAACCCGGTCAAGATGGTATTCCTGGACAA < 41bp 1 0.764459958012196 1 0.759025573730469 experiment 0.471080083975607 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107909782 chrX:107909801 nonsynonymous SNV 0.999 4 40 hm5C_associated_SNPs_38267 0 0 1 0 2 COL4A5 chrX:107909824 5'GT 107909824 Upstream 24bp
chr17 80426665 80426665 1 + T C STAD 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGCGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC < 41bp 1 0.536277351702677 1 0.462855875492096 experiment 0.927445296594646 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426665 nonsynonymous SNV 0.998 1 9 hm5C_associated_SNPs_38268 0 0 1 0 1 NARF chr17:80426640 3'AG 80426640 Downstream 26bp
chr9 137708924 137708924 1 + G T STAD 137708906 + 137708886 137708926 41 TACTGGTGAACCAGGTCCATCGGGGCCTCCAGGAAAAAGGG TACTGGTGAACCAGGTCCATCGGGGCCTCCAGGAAAAATGG < 41bp 1 0.336839405576142 1 0.789427042007446 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137708906 chr9:137708924 nonsynonymous SNV 0.975 4 39 hm5C_associated_SNPs_38269 0 0 0 0 1 COL5A1 chr9:137708872 3'AG 137708872 Downstream 53bp
chr3 193335014 193335014 1 + G C STAD 193335015 + 193334995 193335035 41 AGAAGACCTTGTAAAGTTAGCACCAGACTTTGACAAGATTG AGAAGACCTTGTAAAGTTACCACCAGACTTTGACAAGATTG < 41bp 1 0.693688286725504 1 0.17754191160202 experiment 0.612623426548991 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193335015 chr3:193335014 nonsynonymous SNV 0.927 0 20 hm5C_associated_SNPs_38274 0 0 1 0 2 OPA1 chr3:193334967 3'AG 193334967 Downstream 48bp
chr3 193335014 193335014 1 + G C STAD 193335015 + 193334995 193335035 41 AGAAGACCTTGTAAAGTTAGCACCAGACTTTGACAAGATTG AGAAGACCTTGTAAAGTTACCACCAGACTTTGACAAGATTG < 41bp 1 0.693688286725504 1 0.17754191160202 experiment 0.612623426548991 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193335015 chr3:193335014 nonsynonymous SNV 0.927 0 20 hm5C_associated_SNPs_38274 0 0 1 0 2 OPA1 chr3:193335074 5'GT 193335074 Upstream 61bp
chr11 57373908 57373908 1 + A C STAD 57373925 + 57373905 57373945 41 CCAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA CCACGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA < 41bp 1 0.0218880817612222 1 0.0559627115726471 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373925 chr11:57373908 nonsynonymous SNV 0.000 1 4 hm5C_associated_SNPs_38276 0 0 0 0 1 SERPING1 chr11:57373881 3'AG 57373881 Downstream 28bp
chr11 57373908 57373908 1 + A C STAD 57373926 + 57373906 57373946 41 CAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAG CACGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAG < 41bp 1 0.012641320783187 1 0.0824719071388245 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373926 chr11:57373908 nonsynonymous SNV 0.000 1 3 hm5C_associated_SNPs_38277 0 0 0 0 1 SERPING1 chr11:57373881 3'AG 57373881 Downstream 28bp
chr11 57373908 57373908 1 + A C STAD 57373927 + 57373907 57373947 41 AAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAGT ACGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAGT < 41bp 1 0.0177317799305619 1 0.0342950522899628 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373927 chr11:57373908 nonsynonymous SNV 0.000 1 2 hm5C_associated_SNPs_38278 0 0 0 0 1 SERPING1 chr11:57373881 3'AG 57373881 Downstream 28bp
chr7 91622286 91622286 1 + G A STAD 91622287 + 91622267 91622307 41 GATGATGGAAAGTGAGTTGGCTGGGAAGCAGCATGAGATTG GATGATGGAAAGTGAGTTGACTGGGAAGCAGCATGAGATTG < 41bp 1 0.770421105230081 1 0.213450163602829 experiment 0.459157789539838 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91622287 chr7:91622286 nonsynonymous SNV 0.950 0 20 hm5C_associated_SNPs_38279 0 0 1 0 2 AKAP9 chr7:91622199 3'AG 91622199 Downstream 88bp
chr7 91622286 91622286 1 + G A STAD 91622287 + 91622267 91622307 41 GATGATGGAAAGTGAGTTGGCTGGGAAGCAGCATGAGATTG GATGATGGAAAGTGAGTTGACTGGGAAGCAGCATGAGATTG < 41bp 1 0.770421105230081 1 0.213450163602829 experiment 0.459157789539838 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91622287 chr7:91622286 nonsynonymous SNV 0.950 0 20 hm5C_associated_SNPs_38279 0 0 1 0 2 AKAP9 chr7:91622369 5'GT 91622369 Upstream 84bp
chr7 91622286 91622286 1 + G A STAD 91622295 + 91622275 91622315 41 AAAGTGAGTTGGCTGGGAAGCAGCATGAGATTGAAGAGCTA AAAGTGAGTTGACTGGGAAGCAGCATGAGATTGAAGAGCTA < 41bp 1 0.636261705118929 1 0.738859534263611 experiment 0.727476589762143 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91622295 chr7:91622286 nonsynonymous SNV 0.950 0 12 hm5C_associated_SNPs_38280 0 0 1 0 2 AKAP9 chr7:91622199 3'AG 91622199 Downstream 88bp
chr7 91622286 91622286 1 + G A STAD 91622295 + 91622275 91622315 41 AAAGTGAGTTGGCTGGGAAGCAGCATGAGATTGAAGAGCTA AAAGTGAGTTGACTGGGAAGCAGCATGAGATTGAAGAGCTA < 41bp 1 0.636261705118929 1 0.738859534263611 experiment 0.727476589762143 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91622295 chr7:91622286 nonsynonymous SNV 0.950 0 12 hm5C_associated_SNPs_38280 0 0 1 0 2 AKAP9 chr7:91622369 5'GT 91622369 Upstream 84bp
chr7 91622286 91622286 1 + G A STAD 91622298 + 91622278 91622318 41 GTGAGTTGGCTGGGAAGCAGCATGAGATTGAAGAGCTAAAC GTGAGTTGACTGGGAAGCAGCATGAGATTGAAGAGCTAAAC < 41bp 1 0.455352401692705 1 0.457144975662231 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91622298 chr7:91622286 nonsynonymous SNV 0.950 0 9 hm5C_associated_SNPs_38281 0 0 1 0 2 AKAP9 chr7:91622199 3'AG 91622199 Downstream 88bp
chr7 91622286 91622286 1 + G A STAD 91622298 + 91622278 91622318 41 GTGAGTTGGCTGGGAAGCAGCATGAGATTGAAGAGCTAAAC GTGAGTTGACTGGGAAGCAGCATGAGATTGAAGAGCTAAAC < 41bp 1 0.455352401692705 1 0.457144975662231 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91622298 chr7:91622286 nonsynonymous SNV 0.950 0 9 hm5C_associated_SNPs_38281 0 0 1 0 2 AKAP9 chr7:91622369 5'GT 91622369 Upstream 84bp
chr11 103075616 103075616 1 + T C STAD 103075629 + 103075609 103075649 41 GATAAACTGTGAGAGTAATCCAGCTTTGCATAAGAAATGCC GATAAACCGTGAGAGTAATCCAGCTTTGCATAAGAAATGCC < 41bp 1 0.13407896928082 1 0.421594023704529 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC2H1 ENSG00000187240 CDS Human protein_coding chr11:103075629 chr11:103075616 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_38282 0 0 1 0 2 DYNC2H1 chr11:103075551 3'AG 103075551 Downstream 66bp
chr11 103075616 103075616 1 + T C STAD 103075629 + 103075609 103075649 41 GATAAACTGTGAGAGTAATCCAGCTTTGCATAAGAAATGCC GATAAACCGTGAGAGTAATCCAGCTTTGCATAAGAAATGCC < 41bp 1 0.13407896928082 1 0.421594023704529 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC2H1 ENSG00000187240 CDS Human protein_coding chr11:103075629 chr11:103075616 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_38282 0 0 1 0 2 DYNC2H1 chr11:103075693 5'GT 103075693 Upstream 78bp
chr5 130726771 130726771 1 + C T STAD 130726785 + 130726765 130726805 41 TGGATACGAAGGCGGGATAGCCCTGGTCCTTTCTCCAGTGA TGGATATGAAGGCGGGATAGCCCTGGTCCTTTCTCCAGTGA < 41bp 1 0.53234129674954 1 0.0822742879390717 experiment 0.93531740650092 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDC42SE2 ENSG00000158985 CDS Human protein_coding chr5:130726785 chr5:130726771 nonsynonymous SNV 0.994 3 7 hm5C_associated_SNPs_38291 0 0 1 0 2 CDC42SE2 chr5:130726686 3'AG 130726686 Downstream 86bp
chr5 130726771 130726771 1 + C T STAD 130726785 + 130726765 130726805 41 TGGATACGAAGGCGGGATAGCCCTGGTCCTTTCTCCAGTGA TGGATATGAAGGCGGGATAGCCCTGGTCCTTTCTCCAGTGA < 41bp 1 0.53234129674954 1 0.0822742879390717 experiment 0.93531740650092 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDC42SE2 ENSG00000158985 CDS Human protein_coding chr5:130726785 chr5:130726771 nonsynonymous SNV 0.994 3 7 hm5C_associated_SNPs_38291 0 0 1 0 2 CDC42SE2 chr5:130726801 5'GT 130726801 Upstream 31bp
chr20 30723902 30723902 1 + C T STAD 30723891 + 30723871 30723911 41 CATCAGGCTGTGAAGCTCACCAGCTCTCGAACCCAGCTACC CATCAGGCTGTGAAGCTCACCAGCTCTCGAATCCAGCTACC < 41bp 1 0.457199695000418 1 0.293982446193695 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30723891 chr20:30723902 nonsynonymous SNV 0.999 4 32 hm5C_associated_SNPs_38298 0 0 1 0 2 TM9SF4 chr20:30723877 3'AG 30723877 Downstream 26bp
chr20 30723902 30723902 1 + C T STAD 30723891 + 30723871 30723911 41 CATCAGGCTGTGAAGCTCACCAGCTCTCGAACCCAGCTACC CATCAGGCTGTGAAGCTCACCAGCTCTCGAATCCAGCTACC < 41bp 1 0.457199695000418 1 0.293982446193695 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30723891 chr20:30723902 nonsynonymous SNV 0.999 4 32 hm5C_associated_SNPs_38298 0 0 1 0 2 TM9SF4 chr20:30723976 5'GT 30723976 Upstream 75bp
chr4 38055934 38055934 1 + G A STAD 38055933 + 38055913 38055953 41 AGTAGCCACCCCGCAGAAGGCGTGCGATTCTTCCAGCAGAT AGTAGCCACCCCGCAGAAGGCATGCGATTCTTCCAGCAGAT < 41bp 1 0.347755206986888 1 0.215482294559479 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBC1D1 ENSG00000065882 CDS Human protein_coding chr4:38055933 chr4:38055934 synonymous SNV . 0 22 hm5C_associated_SNPs_38306 0 0 0 0 1 TBC1D1 chr4:38055959 5'GT 38055959 Upstream 26bp
chr19 11660379 11660379 1 + G A STAD 11660370 + 11660350 11660390 41 CACCACCCTTCGCAGGCTGGCATGACTGCGCCAGGGACCAA CACCACCCTTCGCAGGCTGGCATGACTGCACCAGGGACCAA < 41bp 1 0.698566252958042 1 0.064909040927887 experiment 0.602867494083915 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CNN1 ENSG00000130176 CDS Human protein_coding chr19:11660370 chr19:11660379 synonymous SNV . 0 30 hm5C_associated_SNPs_38307 0 0 0 0 1 CNN1 chr19:11660365 3'AG 11660365 Downstream 15bp
chr5 37697794 37697794 1 + C T STAD 37697804 + 37697784 37697824 41 GCTCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTC GCTCATGACTTGGGCACAGACACTTCTTGCGTGACTTTTTC < 41bp 1 0.395965824740517 1 0.0327509045600891 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697804 chr5:37697794 nonsynonymous SNV 0.990 0 11 hm5C_associated_SNPs_38309 0 0 0 2 2 WDR70 chr5:37697757 3'AG 37697757 Downstream 38bp
chr5 37697794 37697794 1 + C T STAD 37697804 + 37697784 37697824 41 GCTCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTC GCTCATGACTTGGGCACAGACACTTCTTGCGTGACTTTTTC < 41bp 1 0.395965824740517 1 0.0327509045600891 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697804 chr5:37697794 nonsynonymous SNV 0.990 0 11 hm5C_associated_SNPs_38309 0 0 0 2 2 WDR70 chr5:37697856 5'GT 37697856 Upstream 63bp
chr5 37697794 37697794 1 + C T STAD 37697806 + 37697786 37697826 41 TCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTCCT TCATGACTTGGGCACAGACACTTCTTGCGTGACTTTTTCCT < 41bp 1 0.266415090497018 1 0.0555252730846405 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697806 chr5:37697794 nonsynonymous SNV 0.990 0 9 hm5C_associated_SNPs_38310 0 0 0 2 2 WDR70 chr5:37697757 3'AG 37697757 Downstream 38bp
chr5 37697794 37697794 1 + C T STAD 37697806 + 37697786 37697826 41 TCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTCCT TCATGACTTGGGCACAGACACTTCTTGCGTGACTTTTTCCT < 41bp 1 0.266415090497018 1 0.0555252730846405 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697806 chr5:37697794 nonsynonymous SNV 0.990 0 9 hm5C_associated_SNPs_38310 0 0 0 2 2 WDR70 chr5:37697856 5'GT 37697856 Upstream 63bp
chr20 23350284 23350284 1 + G A STAD 23350279 + 23350259 23350299 41 TTCACCCAGCTCAACGCCCTCCAGCGCCACCGCCGCATCCA TTCACCCAGCTCAACGCCCTCCAGCACCACCGCCGCATCCA < 41bp 1 0.388123659107844 1 0.687475323677063 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350279 chr20:23350284 nonsynonymous SNV 0.990 3 26 hm5C_associated_SNPs_38311 0 0 0 0 2 GZF1 chr20:23350221 3'AG 23350221 Downstream 64bp
chr20 23350284 23350284 1 + G A STAD 23350279 + 23350259 23350299 41 TTCACCCAGCTCAACGCCCTCCAGCGCCACCGCCGCATCCA TTCACCCAGCTCAACGCCCTCCAGCACCACCGCCGCATCCA < 41bp 1 0.388123659107844 1 0.687475323677063 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350279 chr20:23350284 nonsynonymous SNV 0.990 3 26 hm5C_associated_SNPs_38311 0 0 0 0 2 GZF1 chr20:23350378 5'GT 23350378 Upstream 95bp
chr9 18721613 18721613 1 + C T STAD 18721629 + 18721609 18721649 41 GCCGCCGGCCCCCACAGCTCCTGAAGTCCTGCAATTTGGAT GCCGTCGGCCCCCACAGCTCCTGAAGTCCTGCAATTTGGAT < 41bp 1 0.403920499666111 1 0.311411410570145 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18721629 chr9:18721613 synonymous SNV . 0 5 hm5C_associated_SNPs_38312 0 0 0 0 2 ADAMTSL1 chr9:18721534 3'AG 18721534 Downstream 80bp
chr9 18721613 18721613 1 + C T STAD 18721629 + 18721609 18721649 41 GCCGCCGGCCCCCACAGCTCCTGAAGTCCTGCAATTTGGAT GCCGTCGGCCCCCACAGCTCCTGAAGTCCTGCAATTTGGAT < 41bp 1 0.403920499666111 1 0.311411410570145 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18721629 chr9:18721613 synonymous SNV . 0 5 hm5C_associated_SNPs_38312 0 0 0 0 2 ADAMTSL1 chr9:18721663 5'GT 18721663 Upstream 51bp
chr19 41040082 41040082 1 + C T STAD 41040069 + 41040049 41040089 41 CGAGATCCGCCAGTGCTGGGCGGAGCTGGAGAGCACCACCC CGAGATCCGCCAGTGCTGGGCGGAGCTGGAGAGTACCACCC < 41bp 1 0.483673308754836 1 0.613310694694519 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41040069 chr19:41040082 synonymous SNV . 0 34 hm5C_associated_SNPs_38313 0 0 0 0 1 SPTBN4 chr19:41039987 3'AG 41039987 Downstream 96bp
chr1 24668708 24668708 1 + G A STAD 24668711 + 24668691 24668731 41 CTATGACTGTGGCTTGGGCACTGAGCGCCTGGTACACCGTG CTATGACTGTGGCTTGGACACTGAGCGCCTGGTACACCGTG < 41bp 1 0.734869554480753 1 0.342041790485382 experiment 0.530260891038493 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24668711 chr1:24668708 nonsynonymous SNV 0.428 1 18 hm5C_associated_SNPs_38314 0 0 0 0 1 GRHL3 chr1:24668763 5'GT 24668763 Upstream 56bp
chr18 34349257 34349257 1 + G A STAD 34349255 + 34349235 34349275 41 TAGTTCCTGGACTATGGGAACTGATGACTCGCCCAATGTCA TAGTTCCTGGACTATGGGAACTAATGACTCGCCCAATGTCA < 41bp 1 0.0844956047001494 1 0.0320083200931549 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34349255 chr18:34349257 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_38318 0 0 0 0 1 FHOD3 chr18:34349228 3'AG 34349228 Downstream 30bp
chr1 984699 984699 1 + G A STAD 984697 + 984677 984717 41 TGGCACCGCCTGGAGCTGTCCCGGCACTGGCGCCGGGGCAC TGGCACCGCCTGGAGCTGTCCCAGCACTGGCGCCGGGGCAC < 41bp 1 0.17394097102001 1 0.463614076375961 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984697 chr1:984699 nonsynonymous SNV 0.189 4 23 hm5C_associated_SNPs_38319 0 0 1 0 1 AGRN chr1:984616 3'AG 984616 Downstream 84bp
chr1 984699 984699 1 + G A STAD 984698 + 984678 984718 41 GGCACCGCCTGGAGCTGTCCCGGCACTGGCGCCGGGGCACC GGCACCGCCTGGAGCTGTCCCAGCACTGGCGCCGGGGCACC < 41bp 1 0.72244901120904 1 0.761568903923035 experiment 0.55510197758192 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984698 chr1:984699 nonsynonymous SNV 0.189 4 22 hm5C_associated_SNPs_38320 0 0 1 0 1 AGRN chr1:984616 3'AG 984616 Downstream 84bp
chr1 984699 984699 1 + G A STAD 984701 + 984681 984721 41 ACCGCCTGGAGCTGTCCCGGCACTGGCGCCGGGGCACCCTC ACCGCCTGGAGCTGTCCCAGCACTGGCGCCGGGGCACCCTC < 41bp 1 0.315023936291663 1 0.399055391550064 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984701 chr1:984699 nonsynonymous SNV 0.189 4 19 hm5C_associated_SNPs_38321 0 0 1 0 1 AGRN chr1:984616 3'AG 984616 Downstream 84bp
chr1 984699 984699 1 + G A STAD 984709 + 984689 984729 41 GAGCTGTCCCGGCACTGGCGCCGGGGCACCCTCTCGGTGGA GAGCTGTCCCAGCACTGGCGCCGGGGCACCCTCTCGGTGGA < 41bp 1 0.382566800124853 1 0.699392318725586 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984709 chr1:984699 nonsynonymous SNV 0.189 4 11 hm5C_associated_SNPs_38322 0 0 1 0 1 AGRN chr1:984616 3'AG 984616 Downstream 84bp
chr1 984699 984699 1 + G A STAD 984710 + 984690 984730 41 AGCTGTCCCGGCACTGGCGCCGGGGCACCCTCTCGGTGGAT AGCTGTCCCAGCACTGGCGCCGGGGCACCCTCTCGGTGGAT < 41bp 1 0.459301784859321 1 0.758155941963196 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984710 chr1:984699 nonsynonymous SNV 0.189 4 10 hm5C_associated_SNPs_38323 0 0 1 0 1 AGRN chr1:984616 3'AG 984616 Downstream 84bp
chr17 43318567 43318567 1 + C T STAD 43318550 + 43318530 43318570 41 CCATGGCCAAGATTGCAGAACTGGAAAAACAGCTAAGCCAG CCATGGCCAAGATTGCAGAACTGGAAAAACAGCTAAGTCAG < 41bp 1 0.769147191326499 1 0.403970122337341 experiment 0.461705617347002 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43318550 chr17:43318567 synonymous SNV . 0 38 hm5C_associated_SNPs_38324 0 0 0 0 1 FMNL1 chr17:43318597 5'GT 43318597 Upstream 31bp
chr5 72201192 72201192 1 + T C STAD 72201196 + 72201176 72201216 41 GTTTCTCTGACCAGTTTCCTCTTCCCTTAAAAGAGCGTCTT GTTTCTCTGACCAGTTCCCTCTTCCCTTAAAAGAGCGTCTT < 41bp 1 0.174305709260739 1 0.560324430465698 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72201196 chr5:72201192 synonymous SNV . 0 17 hm5C_associated_SNPs_38326 0 0 1 0 1 TNPO1 chr5:72201130 3'AG 72201130 Downstream 63bp
chr11 68177424 68177424 1 + G A STAD 68177413 + 68177393 68177433 41 CGCCTTCATGAACGGGAGCTCGGTGGAGCACGTGGTGGAGT CGCCTTCATGAACGGGAGCTCGGTGGAGCACATGGTGGAGT < 41bp 1 0.440304152650468 1 0.623640477657318 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68177413 chr11:68177424 nonsynonymous SNV 0.956 4 32 hm5C_associated_SNPs_38327 0 0 1 0 1 LRP5 chr11:68177382 3'AG 68177382 Downstream 43bp
chr16 31122516 31122516 1 + C T STAD 31122511 + 31122491 31122531 41 CCTATGCCACTGGACTACATCCTGCCGGAGCTGCTCAAGAA CCTATGCCACTGGACTACATCCTGCTGGAGCTGCTCAAGAA < 41bp 1 0.186161867492705 1 0.188781321048737 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BCKDK ENSG00000103507 CDS Human protein_coding chr16:31122511 chr16:31122516 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_38328 0 0 1 0 1 BCKDK chr16:31122540 5'GT 31122540 Upstream 25bp
chr11 65403889 65403889 1 + G A STAD 65403903 + 65403883 65403923 41 CACCAGGCCCTGGCTGGGGGCCGCGGTCCTCCCTGAGTGGC CACCAGACCCTGGCTGGGGGCCGCGGTCCTCCCTGAGTGGC < 41bp 1 0.185635713727987 1 0.341803729534149 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403903 chr11:65403889 nonsynonymous SNV 0.999 2 7 hm5C_associated_SNPs_38329 0 0 1 0 1 PCNX3 chr11:65403862 3'AG 65403862 Downstream 28bp
chr11 65403889 65403889 1 + G A STAD 65403904 + 65403884 65403924 41 ACCAGGCCCTGGCTGGGGGCCGCGGTCCTCCCTGAGTGGCT ACCAGACCCTGGCTGGGGGCCGCGGTCCTCCCTGAGTGGCT < 41bp 1 0.418166275207156 1 0.610556602478027 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403904 chr11:65403889 nonsynonymous SNV 0.999 2 6 hm5C_associated_SNPs_38330 0 0 1 0 1 PCNX3 chr11:65403862 3'AG 65403862 Downstream 28bp
chr11 67376963 67376963 1 + G T STAD 67376960 + 67376940 67376980 41 TGAACGCAGACGAGGGGGAGCCGGGCACCTGCAAGGACCGG TGAACGCAGACGAGGGGGAGCCGTGCACCTGCAAGGACCGG < 41bp 1 0.14761928765657 1 0.410029947757721 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67376960 chr11:67376963 nonsynonymous SNV 0.987 5 24 hm5C_associated_SNPs_38331 0 0 1 0 1 NDUFV1 chr11:67376923 3'AG 67376923 Downstream 41bp
chr11 93530729 93530729 1 + T C STAD 93530714 + 93530694 93530734 41 TTGTTAGTTTCATAAACAGACCTTGAGTTCCATCATGATGC TTGTTAGTTTCATAAACAGACCTTGAGTTCCATCACGATGC < 41bp 1 0.037881909150022 1 0.0139822661876678 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MED17 ENSG00000042429 CDS Human protein_coding chr11:93530714 chr11:93530729 nonsynonymous SNV 0.996 0 36 hm5C_associated_SNPs_38332 0 0 1 0 1 MED17 chr11:93530701 3'AG 93530701 Downstream 29bp
chr20 43545461 43545461 1 + C T STAD 43545459 + 43545439 43545479 41 CATTTTGAGACCCATGAGGCCGCACAGCAGGCCATCAACAC CATTTTGAGACCCATGAGGCCGTACAGCAGGCCATCAACAC < 41bp 1 0.0961904035852063 1 0.0257230699062347 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545459 chr20:43545461 nonsynonymous SNV 0.067 4 23 hm5C_associated_SNPs_38333 0 0 1 1 1 PABPC1L chr20:43545397 3'AG 43545397 Downstream 65bp
chr17 46189966 46189966 1 + C T STAD 46189985 + 46189965 46190005 41 CCGAGTGCAGAATGAGGGCTCCTGGAACTCTTATGTGGATT CTGAGTGCAGAATGAGGGCTCCTGGAACTCTTATGTGGATT < 41bp 1 0.133432070120468 1 0.240906685590744 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX11 ENSG00000002919 CDS Human protein_coding chr17:46189985 chr17:46189966 stopgain 0.997 1 2 hm5C_associated_SNPs_38334 0 0 1 0 2 SNX11 chr17:46189936 3'AG 46189936 Downstream 31bp
chr17 46189966 46189966 1 + C T STAD 46189985 + 46189965 46190005 41 CCGAGTGCAGAATGAGGGCTCCTGGAACTCTTATGTGGATT CTGAGTGCAGAATGAGGGCTCCTGGAACTCTTATGTGGATT < 41bp 1 0.133432070120468 1 0.240906685590744 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX11 ENSG00000002919 CDS Human protein_coding chr17:46189985 chr17:46189966 stopgain 0.997 1 2 hm5C_associated_SNPs_38334 0 0 1 0 2 SNX11 chr17:46190022 5'GT 46190022 Upstream 57bp
chr19 49713993 49713993 1 + C T STAD 49713999 + 49713979 49714019 41 CTAAGGAAGCCGAGCGGAAGCTGCTAACGTGGGAATCGGTG CTAAGGAAGCCGAGTGGAAGCTGCTAACGTGGGAATCGGTG < 41bp 1 0.413298472943521 1 0.367744028568268 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49713999 chr19:49713993 nonsynonymous SNV 0.049 3 15 hm5C_associated_SNPs_38335 0 0 0 0 1 TRPM4 chr19:49713967 3'AG 49713967 Downstream 27bp
chr1 6692469 6692469 1 + G C STAD 6692470 + 6692450 6692490 41 GGTCCTCCCTGAGGCGGGGGCCGGAGAGGACAGTCCTGGGA GGTCCTCCCTGAGGCGGGGCCCGGAGAGGACAGTCCTGGGA < 41bp 1 0.736780822609534 1 0.457094013690948 experiment 0.526438354780931 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THAP3 ENSG00000041988 CDS Human protein_coding chr1:6692470 chr1:6692469 nonsynonymous SNV 0.002 1 20 hm5C_associated_SNPs_38336 0 0 1 0 3 THAP3 chr1:6692430 3'AG 6692430 Downstream 40bp
chr1 6692469 6692469 1 + G C STAD 6692470 + 6692450 6692490 41 GGTCCTCCCTGAGGCGGGGGCCGGAGAGGACAGTCCTGGGA GGTCCTCCCTGAGGCGGGGCCCGGAGAGGACAGTCCTGGGA < 41bp 1 0.736780822609534 1 0.457094013690948 experiment 0.526438354780931 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THAP3 ENSG00000041988 CDS Human protein_coding chr1:6692470 chr1:6692469 nonsynonymous SNV 0.002 1 20 hm5C_associated_SNPs_38336 0 0 1 0 3 THAP3 chr1:6692451 3'AG 6692451 Downstream 19bp
chr1 6692469 6692469 1 + G C STAD 6692470 + 6692450 6692490 41 GGTCCTCCCTGAGGCGGGGGCCGGAGAGGACAGTCCTGGGA GGTCCTCCCTGAGGCGGGGCCCGGAGAGGACAGTCCTGGGA < 41bp 1 0.736780822609534 1 0.457094013690948 experiment 0.526438354780931 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THAP3 ENSG00000041988 CDS Human protein_coding chr1:6692470 chr1:6692469 nonsynonymous SNV 0.002 1 20 hm5C_associated_SNPs_38336 0 0 1 0 3 THAP3 chr1:6692555 5'GT 6692555 Upstream 87bp
chr15 74240214 74240214 1 + G A STAD 74240213 + 74240193 74240233 41 TGCCAGTGGATCGACATAACCGACGTGCAGCCTGGGAACTA TGCCAGTGGATCGACATAACCAACGTGCAGCCTGGGAACTA < 41bp 1 0.661182902316171 1 0.341338068246841 experiment 0.677634195367657 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LOXL1 ENSG00000129038 CDS Human protein_coding chr15:74240213 chr15:74240214 nonsynonymous SNV 0.197 4 22 hm5C_associated_SNPs_38337 0 0 0 0 2 LOXL1 chr15:74240148 3'AG 74240148 Downstream 67bp
chr15 74240214 74240214 1 + G A STAD 74240213 + 74240193 74240233 41 TGCCAGTGGATCGACATAACCGACGTGCAGCCTGGGAACTA TGCCAGTGGATCGACATAACCAACGTGCAGCCTGGGAACTA < 41bp 1 0.661182902316171 1 0.341338068246841 experiment 0.677634195367657 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LOXL1 ENSG00000129038 CDS Human protein_coding chr15:74240213 chr15:74240214 nonsynonymous SNV 0.197 4 22 hm5C_associated_SNPs_38337 0 0 0 0 2 LOXL1 chr15:74240243 5'GT 74240243 Upstream 30bp
chr1 2419116 2419116 1 + C T STAD 2419119 + 2419099 2419139 41 AAGATCCTCTTCAAAGACGTCATTGAAACCATCAACAAATA AAGATCCTCTTCAAAGATGTCATTGAAACCATCAACAAATA < 41bp 1 0.0492803939363359 1 0.029834657907486 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2419119 chr1:2419116 synonymous SNV . 0 18 hm5C_associated_SNPs_38339 0 0 0 0 2 PLCH2 chr1:2419037 3'AG 2419037 Downstream 80bp
chr1 2419116 2419116 1 + C T STAD 2419119 + 2419099 2419139 41 AAGATCCTCTTCAAAGACGTCATTGAAACCATCAACAAATA AAGATCCTCTTCAAAGATGTCATTGAAACCATCAACAAATA < 41bp 1 0.0492803939363359 1 0.029834657907486 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2419119 chr1:2419116 synonymous SNV . 0 18 hm5C_associated_SNPs_38339 0 0 0 0 2 PLCH2 chr1:2419157 5'GT 2419157 Upstream 42bp
chr5 173378896 173378896 1 + C T STAD 173378893 + 173378873 173378913 41 ATGGTTCACAGCCACTTGACCCACGAAAAACTATATTTGTT ATGGTTCACAGCCACTTGACCCATGAAAAACTATATTTGTT < 41bp 1 0.0730397349700726 1 0.284194558858871 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173378893 chr5:173378896 stopgain 1.000 1 24 hm5C_associated_SNPs_38340 0 0 1 0 2 CPEB4 chr5:173378827 3'AG 173378827 Downstream 70bp
chr5 173378896 173378896 1 + C T STAD 173378893 + 173378873 173378913 41 ATGGTTCACAGCCACTTGACCCACGAAAAACTATATTTGTT ATGGTTCACAGCCACTTGACCCATGAAAAACTATATTTGTT < 41bp 1 0.0730397349700726 1 0.284194558858871 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173378893 chr5:173378896 stopgain 1.000 1 24 hm5C_associated_SNPs_38340 0 0 1 0 2 CPEB4 chr5:173378941 5'GT 173378941 Upstream 46bp
chr11 62502877 62502877 1 + G A STAD 62502861 + 62502841 62502881 41 TTTGGCCCATTAGCTTGTCTCCTTCAGATGGAGCCCGTGAA TTTGGCCCATTAGCTTGTCTCCTTCAGATGGAGCCCATGAA < 41bp 1 0.0299810590926801 1 0.0481404364109039 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TTC9C ENSG00000162222 CDS Human protein_coding chr11:62502861 chr11:62502877 nonsynonymous SNV 0.993 2 37 hm5C_associated_SNPs_38343 0 0 1 0 1 TTC9C chr11:62502854 3'AG 62502854 Downstream 24bp
chr19 50304308 50304308 1 + C T STAD 50304305 + 50304285 50304325 41 GGAACCTGATTGCTGGGGACCCCCGCTCCAGGTGAGGGAGC GGAACCTGATTGCTGGGGACCCCTGCTCCAGGTGAGGGAGC < 41bp 1 0.097943240666306 1 0.138675093650818 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50304305 chr19:50304308 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_38345 0 0 1 0 2 AP2A1 chr19:50304218 3'AG 50304218 Downstream 91bp
chr19 50304308 50304308 1 + C T STAD 50304305 + 50304285 50304325 41 GGAACCTGATTGCTGGGGACCCCCGCTCCAGGTGAGGGAGC GGAACCTGATTGCTGGGGACCCCTGCTCCAGGTGAGGGAGC < 41bp 1 0.097943240666306 1 0.138675093650818 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50304305 chr19:50304308 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_38345 0 0 1 0 2 AP2A1 chr19:50304315 5'GT 50304315 Upstream 8bp
chr7 4824582 4824582 1 + C T STAD 4824600 + 4824580 4824620 41 TCCGCCACCTCCTCTGCCGGCCGCCTGCTGCCGCCCCGGGA TCTGCCACCTCCTCTGCCGGCCGCCTGCTGCCGCCCCGGGA < 41bp 1 0.148803391799928 1 0.369605958461761 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824600 chr7:4824582 synonymous SNV . 0 3 hm5C_associated_SNPs_38346 0 0 1 0 2 AP5Z1 chr7:4824539 3'AG 4824539 Downstream 44bp
chr7 4824582 4824582 1 + C T STAD 4824600 + 4824580 4824620 41 TCCGCCACCTCCTCTGCCGGCCGCCTGCTGCCGCCCCGGGA TCTGCCACCTCCTCTGCCGGCCGCCTGCTGCCGCCCCGGGA < 41bp 1 0.148803391799928 1 0.369605958461761 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824600 chr7:4824582 synonymous SNV . 0 3 hm5C_associated_SNPs_38346 0 0 1 0 2 AP5Z1 chr7:4824679 5'GT 4824679 Upstream 98bp
chr20 44571745 44571745 1 + C A STAD 44571747 + 44571727 44571767 41 GTCCTGCAGGCATTGAGCCTCCACGGGAGTCTTTCAACCGC GTCCTGCAGGCATTGAGCATCCACGGGAGTCTTTCAACCGC < 41bp 1 0.396833653459191 1 0.434767723083496 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44571747 chr20:44571745 nonsynonymous SNV 0.687 4 19 hm5C_associated_SNPs_38347 0 0 0 0 1 PCIF1 chr20:44571736 3'AG 44571736 Downstream 10bp
chr6 161510475 161510475 1 + T C STAD 161510492 + 161510472 161510512 41 CGGTCATCGCCAAAGCTTTGCAGCAGCTGAAGGTATTACAC CGGCCATCGCCAAAGCTTTGCAGCAGCTGAAGGTATTACAC < 41bp 1 0.692582408535559 1 0.715278744697571 experiment 0.614835182928883 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161510492 chr6:161510475 nonsynonymous SNV 0.990 0 4 hm5C_associated_SNPs_38348 0 0 1 0 1 MAP3K4 chr6:161510503 5'GT 161510503 Upstream 29bp
chr20 34430649 34430649 1 + G A STAD 34430662 + 34430642 34430682 41 CTTGCATGAAGAGGATGGATCTTCTGTGAGTAACAAATCTG CTTGCATAAAGAGGATGGATCTTCTGTGAGTAACAAATCTG < 41bp 1 0.141202456631075 1 0.0790989995002747 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF20 ENSG00000025293 CDS Human protein_coding chr20:34430662 chr20:34430649 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_38349 0 0 1 0 1 PHF20 chr20:34430666 5'GT 34430666 Upstream 18bp
chr12 109547651 109547651 1 + A G STAD 109547637 + 109547617 109547657 41 TTCTTGATCTTTTTCAGAAGCGGCACCATGTACTACAGACG TTCTTGATCTTTTTCAGAAGCGGCACCATGTACTGCAGACG < 41bp 1 0.597390317639233 1 0.380740910768509 experiment 0.805219364721534 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109547637 chr12:109547651 synonymous SNV . 0 35 hm5C_associated_SNPs_38350 0 0 1 0 1 UNG chr12:109547634 3'AG 109547634 Downstream 18bp
chr12 109547651 109547651 1 + A G STAD 109547670 + 109547650 109547690 41 TACAGACGGCTCATCCCTCCCCTTTGTCAGTGTATAGAGGG TGCAGACGGCTCATCCCTCCCCTTTGTCAGTGTATAGAGGG < 41bp 1 0.0495291942844189 1 0.0481204092502594 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109547670 chr12:109547651 synonymous SNV . 0 2 hm5C_associated_SNPs_38351 0 0 1 0 1 UNG chr12:109547634 3'AG 109547634 Downstream 18bp
chr1 249210816 249210816 1 + G A STAD 249210825 + 249210805 249210845 41 GTCATTGCTGGGAGAGGTATCCACTCAAAGGTGAAGTCTGC GTCATTGCTGGAAGAGGTATCCACTCAAAGGTGAAGTCTGC < 41bp 1 0.162935584415321 1 0.221155881881714 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249210825 chr1:249210816 synonymous SNV . 0 12 hm5C_associated_SNPs_38353 0 0 1 0 1 PGBD2 chr1:249210801 3'AG 249210801 Downstream 16bp
chr17 7160303 7160303 1 + C A STAD 7160304 + 7160284 7160324 41 CCCTGGGCGGTACCATGGGCCAGGCCTCGGCCCACATCCTG CCCTGGGCGGTACCATGGGACAGGCCTCGGCCCACATCCTG < 41bp 1 0.73124051166483 1 0.725214123725891 experiment 0.53751897667034 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160304 chr17:7160303 synonymous SNV . 0 20 hm5C_associated_SNPs_38354 0 0 1 0 1 ELP5 chr17:7160357 5'GT 7160357 Upstream 55bp
chr17 7160303 7160303 1 + C A STAD 7160314 + 7160294 7160334 41 TACCATGGGCCAGGCCTCGGCCCACATCCTGTGTCGGAGGC TACCATGGGACAGGCCTCGGCCCACATCCTGTGTCGGAGGC < 41bp 1 0.230354019357246 1 0.345026552677155 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160314 chr17:7160303 synonymous SNV . 0 10 hm5C_associated_SNPs_38355 0 0 1 0 1 ELP5 chr17:7160357 5'GT 7160357 Upstream 55bp
chr17 7160303 7160303 1 + C A STAD 7160315 + 7160295 7160335 41 ACCATGGGCCAGGCCTCGGCCCACATCCTGTGTCGGAGGCC ACCATGGGACAGGCCTCGGCCCACATCCTGTGTCGGAGGCC < 41bp 1 0.514577942573851 1 0.365399420261383 experiment 0.970844114852299 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160315 chr17:7160303 synonymous SNV . 0 9 hm5C_associated_SNPs_38356 0 0 1 0 1 ELP5 chr17:7160357 5'GT 7160357 Upstream 55bp
chr17 7160303 7160303 1 + C A STAD 7160316 + 7160296 7160336 41 CCATGGGCCAGGCCTCGGCCCACATCCTGTGTCGGAGGCCC CCATGGGACAGGCCTCGGCCCACATCCTGTGTCGGAGGCCC < 41bp 1 0.413908342821865 1 0.0708182454109192 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160316 chr17:7160303 synonymous SNV . 0 8 hm5C_associated_SNPs_38357 0 0 1 0 1 ELP5 chr17:7160357 5'GT 7160357 Upstream 55bp
chr14 105360623 105360623 1 + A G STAD 105360625 + 105360605 105360645 41 CCCCCTACCTCGGACAGGATCCTCTTTCAGAACACAGGGAG CCCCCTACCTCGGACAGGGTCCTCTTTCAGAACACAGGGAG < 41bp 1 0.0253856316177942 1 0.113096296787262 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP170B ENSG00000099814 CDS Human protein_coding chr14:105360625 chr14:105360623 nonsynonymous SNV 0.957 0 19 hm5C_associated_SNPs_38360 0 0 0 0 2 CEP170B chr14:105360622 3'AG 105360622 Downstream 2bp
chr14 105360623 105360623 1 + A G STAD 105360625 + 105360605 105360645 41 CCCCCTACCTCGGACAGGATCCTCTTTCAGAACACAGGGAG CCCCCTACCTCGGACAGGGTCCTCTTTCAGAACACAGGGAG < 41bp 1 0.0253856316177942 1 0.113096296787262 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP170B ENSG00000099814 CDS Human protein_coding chr14:105360625 chr14:105360623 nonsynonymous SNV 0.957 0 19 hm5C_associated_SNPs_38360 0 0 0 0 2 CEP170B chr14:105360715 5'GT 105360715 Upstream 93bp
chr1 116940630 116940630 1 + G T STAD 116940615 + 116940595 116940635 41 GAGATAGTGTTTGCCAGGACCTCCCCTCAGCAGAAGCTCAT GAGATAGTGTTTGCCAGGACCTCCCCTCAGCAGAATCTCAT < 41bp 1 0.223245074893915 1 0.178456783294678 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116940615 chr1:116940630 nonsynonymous SNV 1.000 5 36 hm5C_associated_SNPs_38361 0 0 1 0 1 ATP1A1 chr1:116940660 5'GT 116940660 Upstream 31bp
chr2 27157526 27157526 1 + G A STAD 27157542 + 27157522 27157562 41 CCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG CCACACGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG < 41bp 1 0.375232577159843 1 0.811997950077057 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157542 chr2:27157526 nonsynonymous SNV 0.781 5 5 hm5C_associated_SNPs_38362 0 0 0 0 2 DPYSL5 chr2:27157446 3'AG 27157446 Downstream 81bp
chr2 27157526 27157526 1 + G A STAD 27157542 + 27157522 27157562 41 CCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG CCACACGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG < 41bp 1 0.375232577159843 1 0.811997950077057 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157542 chr2:27157526 nonsynonymous SNV 0.781 5 5 hm5C_associated_SNPs_38362 0 0 0 0 2 DPYSL5 chr2:27157602 5'GT 27157602 Upstream 77bp
chr11 9462002 9462002 1 + A C STAD 9462007 + 9461987 9462027 41 ATTATGACTTGGCAGAGGAACTGGGGAGTGATGAAGATGAT ATTATGACTTGGCAGCGGAACTGGGGAGTGATGAAGATGAT < 41bp 1 0.611801170059647 1 0.460153162479401 experiment 0.776397659880707 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9462007 chr11:9462002 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_38363 0 0 1 0 1 IPO7 chr11:9462002 3'AG 9462002 Downstream 1bp
chr11 65733407 65733407 1 + T G STAD 65733404 + 65733384 65733424 41 GGGCCTCACCGTGGAGCATGCCATTGATTCCTTCCGAGAAG GGGCCTCACCGTGGAGCATGCCAGTGATTCCTTCCGAGAAG < 41bp 1 0.310670205197306 1 0.252646148204803 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SART1 ENSG00000175467 CDS Human protein_coding chr11:65733404 chr11:65733407 nonsynonymous SNV 0.978 4 24 hm5C_associated_SNPs_38364 0 0 1 0 2 SART1 chr11:65733358 3'AG 65733358 Downstream 50bp
chr11 65733407 65733407 1 + T G STAD 65733404 + 65733384 65733424 41 GGGCCTCACCGTGGAGCATGCCATTGATTCCTTCCGAGAAG GGGCCTCACCGTGGAGCATGCCAGTGATTCCTTCCGAGAAG < 41bp 1 0.310670205197306 1 0.252646148204803 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SART1 ENSG00000175467 CDS Human protein_coding chr11:65733404 chr11:65733407 nonsynonymous SNV 0.978 4 24 hm5C_associated_SNPs_38364 0 0 1 0 2 SART1 chr11:65733457 5'GT 65733457 Upstream 51bp
chr1 29069012 29069012 1 + C T STAD 29069000 + 29068980 29069020 41 CTCCTATTCTTTGGGTGAAGCTGCTTGGTCTACGGGGGGTG CTCCTATTCTTTGGGTGAAGCTGCTTGGTCTATGGGGGGTG < 41bp 1 0.507763230499325 1 0.259006857872009 experiment 0.984473539001349 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29069000 chr1:29069012 nonsynonymous SNV 0.998 4 33 hm5C_associated_SNPs_38365 0 0 1 0 1 YTHDF2 chr1:29068915 3'AG 29068915 Downstream 98bp
chr21 47841990 47841990 1 + G A STAD 47842001 + 47841981 47842021 41 GTTTCAGCCGCTGCCGGAAGCCATGAAGGAGAAGGAAGTGC GTTTCAGCCACTGCCGGAAGCCATGAAGGAGAAGGAAGTGC < 41bp 1 0.0468475164425889 1 0.231780380010605 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47842001 chr21:47841990 synonymous SNV . 0 10 hm5C_associated_SNPs_38366 0 0 1 0 1 PCNT chr21:47842038 5'GT 47842038 Upstream 49bp
chr19 7620635 7620635 1 + C T STAD 7620645 + 7620625 7620665 41 GCAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGA GCAGCGGGCCTGGGAGTGGGCCAAGGTGTGTGTTGCGAGGA < 41bp 1 0.267417857884463 1 0.432141751050949 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620645 chr19:7620635 nonsynonymous SNV 0.994 3 11 hm5C_associated_SNPs_38368 0 0 1 0 1 PNPLA6 chr19:7620649 5'GT 7620649 Upstream 15bp
chr19 7620635 7620635 1 + C T STAD 7620646 + 7620626 7620666 41 CAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGAG CAGCGGGCCTGGGAGTGGGCCAAGGTGTGTGTTGCGAGGAG < 41bp 1 0.474405093642405 1 0.735196471214294 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620646 chr19:7620635 nonsynonymous SNV 0.994 3 10 hm5C_associated_SNPs_38369 0 0 1 0 1 PNPLA6 chr19:7620649 5'GT 7620649 Upstream 15bp
chr19 40882619 40882619 1 + C T STAD 40882624 + 40882604 40882644 41 TCGGAGCCATCCATGCGGGCCTTCCTGCTCTCTCTGGCTGC TCGGAGCCATCCATGTGGGCCTTCCTGCTCTCTCTGGCTGC < 41bp 1 0.0967221388728527 1 0.0333593487739563 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40882624 chr19:40882619 nonsynonymous SNV 0.850 1 16 hm5C_associated_SNPs_38375 0 0 1 0 1 PLD3 chr19:40882681 5'GT 40882681 Upstream 63bp
chr8 30623815 30623815 1 + C T STAD 30623821 + 30623801 30623841 41 CTTCCTTTCCCAGACGGCCTCTGGCAGTGGAGGGAGGCCAG CTTCCTTTCCCAGATGGCCTCTGGCAGTGGAGGGAGGCCAG < 41bp 1 0.678383021851424 1 0.484572261571884 experiment 0.643233956297152 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBXN8 ENSG00000104691 ncRNA_exonic Human protein_coding chr8:30623821 chr8:30623815 . 0.217 2 15 hm5C_associated_SNPs_38377 0 0 1 0 1 UBXN8 chr8:30623743 3'AG 30623743 Downstream 73bp
chr11 67075666 67075666 1 + C T STAD 67075677 + 67075657 67075697 41 CTGGAGCTGCGCCTGGGGCTCCCCCTCCAGCAGTACCGTGA CTGGAGCTGTGCCTGGGGCTCCCCCTCCAGCAGTACCGTGA < 41bp 1 0.180471987157035 1 0.0694246292114258 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075677 chr11:67075666 nonsynonymous SNV 0.900 4 10 hm5C_associated_SNPs_38383 0 0 1 0 1 SSH3 chr11:67075645 3'AG 67075645 Downstream 22bp
chr19 4954689 4954689 1 + G A STAD 4954693 + 4954673 4954713 41 AGCAGGGCGGGTCCCCGCGCCGGACATCCAAGAAAACCAAG AGCAGGGCGGGTCCCCACGCCGGACATCCAAGAAAACCAAG < 41bp 1 0.320212507332926 1 0.5742427110672 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063;ENSG00000034063 ncRNA_exonic;splicing Human other chr19:4954693 chr19:4954689 . . 0 17 hm5C_associated_SNPs_38384 0 0 0 0 2 UHRF1 chr19:4954662 3'AG 4954662 Downstream 28bp
chr19 4954689 4954689 1 + G A STAD 4954693 + 4954673 4954713 41 AGCAGGGCGGGTCCCCGCGCCGGACATCCAAGAAAACCAAG AGCAGGGCGGGTCCCCACGCCGGACATCCAAGAAAACCAAG < 41bp 1 0.320212507332926 1 0.5742427110672 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063;ENSG00000034063 ncRNA_exonic;splicing Human other chr19:4954693 chr19:4954689 . . 0 17 hm5C_associated_SNPs_38384 0 0 0 0 2 UHRF1 chr19:4954678 3'AG 4954678 Downstream 12bp
chr1 22307617 22307617 1 + G A STAD 22307603 + 22307583 22307623 41 GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCT GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGACCT < 41bp 1 0.394337586398695 1 0.062059223651886 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307603 chr1:22307617 nonsynonymous SNV 0.008 0 35 hm5C_associated_SNPs_38385 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 87bp
chr1 22307617 22307617 1 + G A STAD 22307603 + 22307583 22307623 41 GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCT GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGACCT < 41bp 1 0.394337586398695 1 0.062059223651886 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307603 chr1:22307617 nonsynonymous SNV 0.008 0 35 hm5C_associated_SNPs_38385 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 49bp
chr1 22307617 22307617 1 + G A STAD 22307604 + 22307584 22307624 41 AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTC AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGACCTC < 41bp 1 0.0796023910388128 1 0.0395603477954865 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307604 chr1:22307617 nonsynonymous SNV 0.008 0 34 hm5C_associated_SNPs_38386 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 87bp
chr1 22307617 22307617 1 + G A STAD 22307604 + 22307584 22307624 41 AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTC AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGACCTC < 41bp 1 0.0796023910388128 1 0.0395603477954865 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307604 chr1:22307617 nonsynonymous SNV 0.008 0 34 hm5C_associated_SNPs_38386 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 49bp
chr1 22307617 22307617 1 + G A STAD 22307605 + 22307585 22307625 41 GGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTCT GGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGACCTCT < 41bp 1 0.0377496767401822 1 0.0817853212356567 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307605 chr1:22307617 nonsynonymous SNV 0.008 0 33 hm5C_associated_SNPs_38387 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 87bp
chr1 22307617 22307617 1 + G A STAD 22307605 + 22307585 22307625 41 GGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTCT GGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGACCTCT < 41bp 1 0.0377496767401822 1 0.0817853212356567 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307605 chr1:22307617 nonsynonymous SNV 0.008 0 33 hm5C_associated_SNPs_38387 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 49bp
chr1 22307617 22307617 1 + G A STAD 22307606 + 22307586 22307626 41 GGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTCTT GGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGACCTCTT < 41bp 1 0.279647923038715 1 0.339181840419769 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307606 chr1:22307617 nonsynonymous SNV 0.008 0 32 hm5C_associated_SNPs_38388 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 87bp
chr1 22307617 22307617 1 + G A STAD 22307606 + 22307586 22307626 41 GGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTCTT GGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGACCTCTT < 41bp 1 0.279647923038715 1 0.339181840419769 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307606 chr1:22307617 nonsynonymous SNV 0.008 0 32 hm5C_associated_SNPs_38388 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 49bp
chr1 22307617 22307617 1 + G A STAD 22307612 + 22307592 22307632 41 GAGCAGGTGATCCCCATCAACTCTGGGGACCTCTTTGTGCA GAGCAGGTGATCCCCATCAACTCTGAGGACCTCTTTGTGCA < 41bp 1 0.47690686614178 1 0.680661976337433 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307612 chr1:22307617 nonsynonymous SNV 0.008 0 26 hm5C_associated_SNPs_38389 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 87bp
chr1 22307617 22307617 1 + G A STAD 22307612 + 22307592 22307632 41 GAGCAGGTGATCCCCATCAACTCTGGGGACCTCTTTGTGCA GAGCAGGTGATCCCCATCAACTCTGAGGACCTCTTTGTGCA < 41bp 1 0.47690686614178 1 0.680661976337433 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307612 chr1:22307617 nonsynonymous SNV 0.008 0 26 hm5C_associated_SNPs_38389 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 49bp
chr1 22307617 22307617 1 + G A STAD 22307614 + 22307594 22307634 41 GCAGGTGATCCCCATCAACTCTGGGGACCTCTTTGTGCATC GCAGGTGATCCCCATCAACTCTGAGGACCTCTTTGTGCATC < 41bp 1 0.735555827834671 1 0.182874858379364 experiment 0.528888344330658 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307614 chr1:22307617 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_38390 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 87bp
chr1 22307617 22307617 1 + G A STAD 22307614 + 22307594 22307634 41 GCAGGTGATCCCCATCAACTCTGGGGACCTCTTTGTGCATC GCAGGTGATCCCCATCAACTCTGAGGACCTCTTTGTGCATC < 41bp 1 0.735555827834671 1 0.182874858379364 experiment 0.528888344330658 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307614 chr1:22307617 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_38390 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 49bp
chr1 22307617 22307617 1 + G A STAD 22307621 + 22307601 22307641 41 ATCCCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTG ATCCCCATCAACTCTGAGGACCTCTTTGTGCATCCACTCTG < 41bp 1 0.0632979551259205 1 0.0221139788627625 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307621 chr1:22307617 nonsynonymous SNV 0.008 0 17 hm5C_associated_SNPs_38391 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 87bp
chr1 22307617 22307617 1 + G A STAD 22307621 + 22307601 22307641 41 ATCCCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTG ATCCCCATCAACTCTGAGGACCTCTTTGTGCATCCACTCTG < 41bp 1 0.0632979551259205 1 0.0221139788627625 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307621 chr1:22307617 nonsynonymous SNV 0.008 0 17 hm5C_associated_SNPs_38391 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 49bp
chr1 22307617 22307617 1 + G A STAD 22307622 + 22307602 22307642 41 TCCCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTGG TCCCCATCAACTCTGAGGACCTCTTTGTGCATCCACTCTGG < 41bp 1 0.102243226170206 1 0.115247964859009 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307622 chr1:22307617 nonsynonymous SNV 0.008 0 16 hm5C_associated_SNPs_38392 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 87bp
chr1 22307617 22307617 1 + G A STAD 22307622 + 22307602 22307642 41 TCCCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTGG TCCCCATCAACTCTGAGGACCTCTTTGTGCATCCACTCTGG < 41bp 1 0.102243226170206 1 0.115247964859009 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307622 chr1:22307617 nonsynonymous SNV 0.008 0 16 hm5C_associated_SNPs_38392 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 49bp
chr1 22307617 22307617 1 + G A STAD 22307624 + 22307604 22307644 41 CCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTGGAA CCCATCAACTCTGAGGACCTCTTTGTGCATCCACTCTGGAA < 41bp 1 0.144687142435496 1 0.0617555975914001 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307624 chr1:22307617 nonsynonymous SNV 0.008 0 14 hm5C_associated_SNPs_38393 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 87bp
chr1 22307617 22307617 1 + G A STAD 22307624 + 22307604 22307644 41 CCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTGGAA CCCATCAACTCTGAGGACCTCTTTGTGCATCCACTCTGGAA < 41bp 1 0.144687142435496 1 0.0617555975914001 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307624 chr1:22307617 nonsynonymous SNV 0.008 0 14 hm5C_associated_SNPs_38393 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 49bp
chr1 22307617 22307617 1 + G A STAD 22307631 + 22307611 22307651 41 ACTCTGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCG ACTCTGAGGACCTCTTTGTGCATCCACTCTGGAACCGCTCG < 41bp 1 0.120628534696818 1 0.314641177654266 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307631 chr1:22307617 nonsynonymous SNV 0.008 0 7 hm5C_associated_SNPs_38394 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 87bp
chr1 22307617 22307617 1 + G A STAD 22307631 + 22307611 22307651 41 ACTCTGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCG ACTCTGAGGACCTCTTTGTGCATCCACTCTGGAACCGCTCG < 41bp 1 0.120628534696818 1 0.314641177654266 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307631 chr1:22307617 nonsynonymous SNV 0.008 0 7 hm5C_associated_SNPs_38394 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 49bp
chr1 22307617 22307617 1 + G A STAD 22307634 + 22307614 22307654 41 CTGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGT CTGAGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGT < 41bp 1 0.122376984476869 1 0.0625671744346619 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307634 chr1:22307617 nonsynonymous SNV 0.008 0 4 hm5C_associated_SNPs_38395 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 87bp
chr1 22307617 22307617 1 + G A STAD 22307634 + 22307614 22307654 41 CTGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGT CTGAGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGT < 41bp 1 0.122376984476869 1 0.0625671744346619 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307634 chr1:22307617 nonsynonymous SNV 0.008 0 4 hm5C_associated_SNPs_38395 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 49bp
chr1 22307617 22307617 1 + G A STAD 22307635 + 22307615 22307655 41 TGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTG TGAGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTG < 41bp 1 0.131793549811621 1 0.051992267370224 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307635 chr1:22307617 nonsynonymous SNV 0.008 0 3 hm5C_associated_SNPs_38396 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 87bp
chr1 22307617 22307617 1 + G A STAD 22307635 + 22307615 22307655 41 TGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTG TGAGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTG < 41bp 1 0.131793549811621 1 0.051992267370224 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307635 chr1:22307617 nonsynonymous SNV 0.008 0 3 hm5C_associated_SNPs_38396 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 49bp
chr1 22307617 22307617 1 + G A STAD 22307637 + 22307617 22307657 41 GGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG AGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG < 41bp 1 0.26467856728377 1 0.0899119675159454 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307637 chr1:22307617 nonsynonymous SNV 0.008 0 1 hm5C_associated_SNPs_38397 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 87bp
chr1 22307617 22307617 1 + G A STAD 22307637 + 22307617 22307657 41 GGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG AGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG < 41bp 1 0.26467856728377 1 0.0899119675159454 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307637 chr1:22307617 nonsynonymous SNV 0.008 0 1 hm5C_associated_SNPs_38397 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 49bp
chr21 17250145 17250145 1 + G A STAD 17250131 + 17250111 17250151 41 TAAGAAATTAAATGAGCAAGCCGCAGAACTCTTCGAATCTG TAAGAAATTAAATGAGCAAGCCGCAGAACTCTTCAAATCTG < 41bp 1 0.479172747891236 1 0.437711954116821 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP25 ENSG00000155313 CDS Human protein_coding chr21:17250131 chr21:17250145 nonsynonymous SNV 0.992 2 35 hm5C_associated_SNPs_38398 0 0 1 0 1 USP25 chr21:17250115 3'AG 17250115 Downstream 31bp
chr11 65978630 65978630 1 + C T STAD 65978631 + 65978611 65978651 41 CATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGCT CATTTCCTTAAGCGAGATGTCAACAAGCTGCAGATCATGCT < 41bp 1 0.361375329922813 1 0.532347559928894 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978631 chr11:65978630 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_38399 0 0 1 0 1 PACS1 chr11:65978605 3'AG 65978605 Downstream 26bp
chr11 65978630 65978630 1 + C T STAD 65978638 + 65978618 65978658 41 TTAAGCGAGATGCCAACAAGCTGCAGATCATGCTGCAAAGG TTAAGCGAGATGTCAACAAGCTGCAGATCATGCTGCAAAGG < 41bp 1 0.602911933298718 1 0.163117825984955 experiment 0.794176133402565 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978638 chr11:65978630 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_38400 0 0 1 0 1 PACS1 chr11:65978605 3'AG 65978605 Downstream 26bp
chr4 126337721 126337721 1 + G A STAD 126337729 + 126337709 126337749 41 GAGTAACACAGAGTCTGGATCGGGAAACAAAAGAGCGCTTT GAGTAACACAGAATCTGGATCGGGAAACAAAAGAGCGCTTT < 41bp 1 0.562870771625769 1 0.938445806503296 experiment 0.874258456748462 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126337729 chr4:126337721 nonsynonymous SNV 0.936 0 13 hm5C_associated_SNPs_38407 0 0 1 0 1 FAT4 chr4:126337777 5'GT 126337777 Upstream 57bp
chr6 158900925 158900925 1 + G A STAD 158900920 + 158900900 158900940 41 CAGCAGGCCATCGCCAGCACCTTGCGTGAGGACAAGGACGT CAGCAGGCCATCGCCAGCACCTTGCATGAGGACAAGGACGT < 41bp 1 0.143299837684267 1 0.249246686697006 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TULP4 ENSG00000130338 CDS Human protein_coding chr6:158900920 chr6:158900925 nonsynonymous SNV 0.928 0 26 hm5C_associated_SNPs_38412 0 0 1 0 1 TULP4 chr6:158901007 5'GT 158901007 Upstream 83bp
chr1 27088709 27088709 1 + C T STAD 27088714 + 27088694 27088734 41 GCTCAGCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA GCTCAGCCTTATCTCTGCGTCAGCCTTCCGGAGGACAGATA < 41bp 1 0.247857506968231 1 0.15415957570076 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27088714 chr1:27088709 nonsynonymous SNV 0.998 2 16 hm5C_associated_SNPs_38413 0 0 1 0 1 ARID1A chr1:27088643 3'AG 27088643 Downstream 67bp
chr3 172052826 172052826 1 + G A STAD 172052840 + 172052820 172052860 41 CAGACCGCTTGTCAAAGGCCCAGTTACATCTCATGGCTTTA CAGACCACTTGTCAAAGGCCCAGTTACATCTCATGGCTTTA < 41bp 1 0.0673304696045501 1 0.0439218878746033 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172052840 chr3:172052826 synonymous SNV . 0 7 hm5C_associated_SNPs_38414 0 0 0 0 2 FNDC3B chr3:172052734 3'AG 172052734 Downstream 93bp
chr3 172052826 172052826 1 + G A STAD 172052840 + 172052820 172052860 41 CAGACCGCTTGTCAAAGGCCCAGTTACATCTCATGGCTTTA CAGACCACTTGTCAAAGGCCCAGTTACATCTCATGGCTTTA < 41bp 1 0.0673304696045501 1 0.0439218878746033 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172052840 chr3:172052826 synonymous SNV . 0 7 hm5C_associated_SNPs_38414 0 0 0 0 2 FNDC3B chr3:172052872 5'GT 172052872 Upstream 47bp
chr11 45891672 45891672 1 + C T STAD 45891669 + 45891649 45891689 41 GGCAGCTGGATGTGGCTGTCCTGCAGTGCTTTCTTCCAGCA GGCAGCTGGATGTGGCTGTCCTGTAGTGCTTTCTTCCAGCA < 41bp 1 0.709430370809519 1 0.431254923343658 experiment 0.581139258380962 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45891669 chr11:45891672 synonymous SNV . 0 24 hm5C_associated_SNPs_38415 0 0 1 0 2 CRY2 chr11:45891604 3'AG 45891604 Downstream 69bp
chr11 45891672 45891672 1 + C T STAD 45891669 + 45891649 45891689 41 GGCAGCTGGATGTGGCTGTCCTGCAGTGCTTTCTTCCAGCA GGCAGCTGGATGTGGCTGTCCTGTAGTGCTTTCTTCCAGCA < 41bp 1 0.709430370809519 1 0.431254923343658 experiment 0.581139258380962 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45891669 chr11:45891672 synonymous SNV . 0 24 hm5C_associated_SNPs_38415 0 0 1 0 2 CRY2 chr11:45891755 5'GT 45891755 Upstream 84bp
chr6 74502433 74502433 1 + T G STAD 74502417 + 74502397 74502437 41 TGCCTTATGGCTGTGGTGAACAGAACATGATAAATTTTGCT TGCCTTATGGCTGTGGTGAACAGAACATGATAAATTGTGCT < 41bp 1 0.411899604217314 1 0.49592587351799 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD109 ENSG00000156535 CDS Human protein_coding chr6:74502417 chr6:74502433 nonsynonymous SNV 0.815 4 37 hm5C_associated_SNPs_38416 0 0 0 0 2 CD109 chr6:74502349 3'AG 74502349 Downstream 85bp
chr6 74502433 74502433 1 + T G STAD 74502417 + 74502397 74502437 41 TGCCTTATGGCTGTGGTGAACAGAACATGATAAATTTTGCT TGCCTTATGGCTGTGGTGAACAGAACATGATAAATTGTGCT < 41bp 1 0.411899604217314 1 0.49592587351799 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD109 ENSG00000156535 CDS Human protein_coding chr6:74502417 chr6:74502433 nonsynonymous SNV 0.815 4 37 hm5C_associated_SNPs_38416 0 0 0 0 2 CD109 chr6:74502525 5'GT 74502525 Upstream 93bp
chr17 48153038 48153038 1 + T G STAD 48153033 + 48153013 48153053 41 CGCTTTGCCGGCAGTGAGTCCGCTGTCTTCCACGGCTTCTT CGCTTTGCCGGCAGTGAGTCCGCTGGCTTCCACGGCTTCTT < 41bp 1 0.36313261829989 1 0.46764349937439 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48153033 chr17:48153038 nonsynonymous SNV 0.892 0 26 hm5C_associated_SNPs_38417 0 0 0 0 2 ITGA3 chr17:48152963 3'AG 48152963 Downstream 76bp
chr17 48153038 48153038 1 + T G STAD 48153033 + 48153013 48153053 41 CGCTTTGCCGGCAGTGAGTCCGCTGTCTTCCACGGCTTCTT CGCTTTGCCGGCAGTGAGTCCGCTGGCTTCCACGGCTTCTT < 41bp 1 0.36313261829989 1 0.46764349937439 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48153033 chr17:48153038 nonsynonymous SNV 0.892 0 26 hm5C_associated_SNPs_38417 0 0 0 0 2 ITGA3 chr17:48153099 5'GT 48153099 Upstream 62bp
chr1 117626657 117626657 1 + T C STAD 117626677 + 117626657 117626697 41 TCCCATGGAACACTAATCATCTGTCCTGCCTCCCTGATCCA CCCCATGGAACACTAATCATCTGTCCTGCCTCCCTGATCCA < 41bp 1 0.142033961834732 1 0.103403776884079 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117626677 chr1:117626657 nonsynonymous SNV 0.444 4 1 hm5C_associated_SNPs_38418 0 0 1 0 1 TTF2 chr1:117626640 3'AG 117626640 Downstream 18bp
chr20 30155910 30155910 1 + A G STAD 30155892 + 30155872 30155912 41 CTCACACAGCTACGAGTCCTCGGCGGAAATCCTGCCTCATA CTCACACAGCTACGAGTCCTCGGCGGAAATCCTGCCTCGTA < 41bp 1 0.749394775721622 1 0.921732068061829 experiment 0.501210448556755 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HM13 ENSG00000101294 CDS Human protein_coding chr20:30155892 chr20:30155910 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_38419 0 0 1 0 1 HM13 chr20:30155881 3'AG 30155881 Downstream 30bp
chr11 67818098 67818098 1 + T G STAD 67818104 + 67818084 67818124 41 GGTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGC GGTGATGGAGGGACGCTCAGCCTTCCTGCACGCCCTGCGGC < 41bp 1 0.037421153767548 1 0.213667929172516 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818104 chr11:67818098 nonsynonymous SNV 0.998 5 15 hm5C_associated_SNPs_38420 0 0 1 0 1 TCIRG1 chr11:67818131 5'GT 67818131 Upstream 34bp
chr11 67818098 67818098 1 + T G STAD 67818105 + 67818085 67818125 41 GTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGCT GTGATGGAGGGACGCTCAGCCTTCCTGCACGCCCTGCGGCT < 41bp 1 0.172127955067236 1 0.442100465297699 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818105 chr11:67818098 nonsynonymous SNV 0.998 5 14 hm5C_associated_SNPs_38421 0 0 1 0 1 TCIRG1 chr11:67818131 5'GT 67818131 Upstream 34bp
chr9 129458217 129458217 1 + G A STAD 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGCCCCTACGGCAACAGCGACCCCTTCCAGCAGGG < 41bp 1 0.59785523476627 1 0.489374250173569 experiment 0.804289530467459 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458217 nonsynonymous SNV 0.982 1 20 hm5C_associated_SNPs_38422 0 0 0 0 3 LMX1B chr9:129458118 3'AG 129458118 Downstream 100bp
chr9 129458217 129458217 1 + G A STAD 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGCCCCTACGGCAACAGCGACCCCTTCCAGCAGGG < 41bp 1 0.59785523476627 1 0.489374250173569 experiment 0.804289530467459 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458217 nonsynonymous SNV 0.982 1 20 hm5C_associated_SNPs_38422 0 0 0 0 3 LMX1B chr9:129458261 5'GT 129458261 Upstream 45bp
chr9 129458217 129458217 1 + G A STAD 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGCCCCTACGGCAACAGCGACCCCTTCCAGCAGGG < 41bp 1 0.59785523476627 1 0.489374250173569 experiment 0.804289530467459 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458217 nonsynonymous SNV 0.982 1 20 hm5C_associated_SNPs_38422 0 0 0 0 3 LMX1B chr9:129458282 5'GT 129458282 Upstream 66bp
chr1 78001620 78001620 1 + C A STAD 78001612 + 78001592 78001632 41 CTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGTGGACGACAC CTTCTCCAAAGGAGCCGGAGCAGCCTGCATGTGGACGACAC < 41bp 1 0.410128398268506 1 0.272564440965652 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001612 chr1:78001620 nonsynonymous SNV 0.000 0 29 hm5C_associated_SNPs_38423 0 0 0 0 1 AK5 chr1:78001532 3'AG 78001532 Downstream 89bp
chr19 7682705 7682705 1 + C T STAD 7682691 + 7682671 7682711 41 ATCCTCTTTCGCGACTCGAGCTGCCAGTTCCGGGCGCTCTA ATCCTCTTTCGCGACTCGAGCTGCCAGTTCCGGGTGCTCTA < 41bp 1 0.23061150413932 1 0.0546637773513794 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7682691 chr19:7682705 nonsynonymous SNV 0.952 4 35 hm5C_associated_SNPs_38424 0 0 0 0 1 CAMSAP3 chr19:7682638 3'AG 7682638 Downstream 68bp
chr6 161510480 161510480 1 + G A STAD 161510492 + 161510472 161510512 41 CGGTCATCGCCAAAGCTTTGCAGCAGCTGAAGGTATTACAC CGGTCATCACCAAAGCTTTGCAGCAGCTGAAGGTATTACAC < 41bp 1 0.617028954593287 1 0.508257865905762 experiment 0.765942090813426 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161510492 chr6:161510480 nonsynonymous SNV 0.994 2 9 hm5C_associated_SNPs_38430 0 0 1 0 1 MAP3K4 chr6:161510503 5'GT 161510503 Upstream 24bp
chr18 48604699 48604699 1 + A T STAD 48604710 + 48604690 48604730 41 TTTTGTGAAAGGCTGGGGACCGGATTACCCAAGACAGAGCA TTTTGTGAATGGCTGGGGACCGGATTACCCAAGACAGAGCA < 41bp 1 0.495617256838193 1 0.706131458282471 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48604710 chr18:48604699 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_38431 0 0 1 0 1 SMAD4 chr18:48604626 3'AG 48604626 Downstream 74bp
chr3 42251455 42251455 1 + A C STAD 42251472 + 42251452 42251492 41 TCCAGTTCAGCACCCAGAGACCTCAGGTGAGAGGTCCCAAG TCCCGTTCAGCACCCAGAGACCTCAGGTGAGAGGTCCCAAG < 41bp 1 0.194649572340248 1 0.110847383737564 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42251472 chr3:42251455 synonymous SNV . 0 4 hm5C_associated_SNPs_38433 0 0 1 0 1 TRAK1 chr3:42251477 5'GT 42251477 Upstream 23bp
chr5 14359556 14359556 1 + G A STAD 14359551 + 14359531 14359571 41 TGCAGCAGCTGGACGAGGCGCAGTCGCAGATGGAGGAGCTC TGCAGCAGCTGGACGAGGCGCAGTCACAGATGGAGGAGCTC < 41bp 1 0.0448603594611911 1 0.219469010829926 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359551 chr5:14359556 synonymous SNV . 0 26 hm5C_associated_SNPs_38435 0 0 1 0 2 TRIO chr5:14359466 3'AG 14359466 Downstream 91bp
chr5 14359556 14359556 1 + G A STAD 14359551 + 14359531 14359571 41 TGCAGCAGCTGGACGAGGCGCAGTCGCAGATGGAGGAGCTC TGCAGCAGCTGGACGAGGCGCAGTCACAGATGGAGGAGCTC < 41bp 1 0.0448603594611911 1 0.219469010829926 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359551 chr5:14359556 synonymous SNV . 0 26 hm5C_associated_SNPs_38435 0 0 1 0 2 TRIO chr5:14359640 5'GT 14359640 Upstream 85bp
chr5 14359556 14359556 1 + G A STAD 14359555 + 14359535 14359575 41 GCAGCTGGACGAGGCGCAGTCGCAGATGGAGGAGCTCTTCC GCAGCTGGACGAGGCGCAGTCACAGATGGAGGAGCTCTTCC < 41bp 1 0.550857139714109 1 0.763787150382996 experiment 0.898285720571781 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359555 chr5:14359556 synonymous SNV . 0 22 hm5C_associated_SNPs_38436 0 0 1 0 2 TRIO chr5:14359466 3'AG 14359466 Downstream 91bp
chr5 14359556 14359556 1 + G A STAD 14359555 + 14359535 14359575 41 GCAGCTGGACGAGGCGCAGTCGCAGATGGAGGAGCTCTTCC GCAGCTGGACGAGGCGCAGTCACAGATGGAGGAGCTCTTCC < 41bp 1 0.550857139714109 1 0.763787150382996 experiment 0.898285720571781 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359555 chr5:14359556 synonymous SNV . 0 22 hm5C_associated_SNPs_38436 0 0 1 0 2 TRIO chr5:14359640 5'GT 14359640 Upstream 85bp
chr6 33657074 33657074 1 + G T STAD 33657075 + 33657055 33657095 41 CCTCATCTGCTTCTCCATCGCGGCCCTGTTCACCAAGCGCT CCTCATCTGCTTCTCCATCTCGGCCCTGTTCACCAAGCGCT < 41bp 1 0.276413903679729 1 0.560659468173981 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33657075 chr6:33657074 nonsynonymous SNV 0.206 2 20 hm5C_associated_SNPs_38437 0 0 1 0 1 ITPR3 chr6:33657015 3'AG 33657015 Downstream 60bp
chr8 145535422 145535422 1 + G A STAD 145535406 + 145535386 145535426 41 GCCCCCTCCCCAGCCTACAGCAGCTCCAGCCTCTACGCCCC GCCCCCTCCCCAGCCTACAGCAGCTCCAGCCTCTACACCCC < 41bp 1 0.333598860497662 1 0.319120466709137 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSF1 ENSG00000185122 CDS Human protein_coding chr8:145535406 chr8:145535422 nonsynonymous SNV 0.072 0 37 hm5C_associated_SNPs_38438 0 0 1 0 1 HSF1 chr8:145535386 3'AG 145535386 Downstream 37bp
chr16 12662446 12662446 1 + G A STAD 12662431 + 12662411 12662451 41 TTCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGA TTCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCAGGAGA < 41bp 1 0.30773067551755 1 0.50423663854599 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662431 chr16:12662446 nonsynonymous SNV 0.437 2 36 hm5C_associated_SNPs_38440 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 84bp
chr16 12662446 12662446 1 + G A STAD 12662432 + 12662412 12662452 41 TCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGAC TCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCAGGAGAC < 41bp 1 0.332645176868786 1 0.619195640087128 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662432 chr16:12662446 nonsynonymous SNV 0.437 2 35 hm5C_associated_SNPs_38441 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 84bp
chr16 12662446 12662446 1 + G A STAD 12662433 + 12662413 12662453 41 CCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGACC CCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCAGGAGACC < 41bp 1 0.412619175260043 1 0.881768465042114 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662433 chr16:12662446 nonsynonymous SNV 0.437 2 34 hm5C_associated_SNPs_38442 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 84bp
chr16 12662446 12662446 1 + G A STAD 12662443 + 12662423 12662463 41 CAAACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAACGTGG CAAACTGTCCCGGGGTCAGCCCCAGGAGACCCGCAACGTGG < 41bp 1 0.194484808613013 1 0.568984985351562 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662443 chr16:12662446 nonsynonymous SNV 0.437 2 24 hm5C_associated_SNPs_38443 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 84bp
chr16 12662446 12662446 1 + G A STAD 12662444 + 12662424 12662464 41 AAACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAACGTGGA AAACTGTCCCGGGGTCAGCCCCAGGAGACCCGCAACGTGGA < 41bp 1 0.138890541095227 1 0.678095877170563 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662444 chr16:12662446 nonsynonymous SNV 0.437 2 23 hm5C_associated_SNPs_38444 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 84bp
chr16 12662446 12662446 1 + G A STAD 12662445 + 12662425 12662465 41 AACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAACGTGGAG AACTGTCCCGGGGTCAGCCCCAGGAGACCCGCAACGTGGAG < 41bp 1 0.63485465568082 1 0.9393470287323 experiment 0.73029068863836 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662445 chr16:12662446 nonsynonymous SNV 0.437 2 22 hm5C_associated_SNPs_38445 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 84bp
chr19 13930229 13930229 1 + C T STAD 13930238 + 13930218 13930258 41 CCCATGCACACCTGTGCCCGCTACCTGTTCACCGCACTGCT CCCATGCACACTTGTGCCCGCTACCTGTTCACCGCACTGCT < 41bp 1 0.110418098472413 1 0.0640301108360291 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13930238 chr19:13930229 synonymous SNV . 0 12 hm5C_associated_SNPs_38446 0 0 0 0 2 ZSWIM4 chr19:13930171 3'AG 13930171 Downstream 59bp
chr19 13930229 13930229 1 + C T STAD 13930238 + 13930218 13930258 41 CCCATGCACACCTGTGCCCGCTACCTGTTCACCGCACTGCT CCCATGCACACTTGTGCCCGCTACCTGTTCACCGCACTGCT < 41bp 1 0.110418098472413 1 0.0640301108360291 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13930238 chr19:13930229 synonymous SNV . 0 12 hm5C_associated_SNPs_38446 0 0 0 0 2 ZSWIM4 chr19:13930306 5'GT 13930306 Upstream 78bp
chr2 101622447 101622447 1 + G A STAD 101622433 + 101622413 101622453 41 TTTATTAGGAATGTGCCATACCGAATCCGTGTGCGGCTGTC TTTATTAGGAATGTGCCATACCGAATCCGTGTGCAGCTGTC < 41bp 1 0.732288554758075 1 0.291333436965942 experiment 0.53542289048385 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622433 chr2:101622447 nonsynonymous SNV 0.999 1 35 hm5C_associated_SNPs_38447 0 0 1 0 2 RPL31 chr2:101622421 3'AG 101622421 Downstream 27bp
chr2 101622447 101622447 1 + G A STAD 101622433 + 101622413 101622453 41 TTTATTAGGAATGTGCCATACCGAATCCGTGTGCGGCTGTC TTTATTAGGAATGTGCCATACCGAATCCGTGTGCAGCTGTC < 41bp 1 0.732288554758075 1 0.291333436965942 experiment 0.53542289048385 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622433 chr2:101622447 nonsynonymous SNV 0.999 1 35 hm5C_associated_SNPs_38447 0 0 1 0 2 RPL31 chr2:101622533 5'GT 101622533 Upstream 87bp
chr2 101622447 101622447 1 + G A STAD 101622446 + 101622426 101622466 41 TGCCATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAAT TGCCATACCGAATCCGTGTGCAGCTGTCCAGAAAACGTAAT < 41bp 1 0.576868679013188 1 0.217112123966217 experiment 0.846262641973625 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622446 chr2:101622447 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_38448 0 0 1 0 2 RPL31 chr2:101622421 3'AG 101622421 Downstream 27bp
chr2 101622447 101622447 1 + G A STAD 101622446 + 101622426 101622466 41 TGCCATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAAT TGCCATACCGAATCCGTGTGCAGCTGTCCAGAAAACGTAAT < 41bp 1 0.576868679013188 1 0.217112123966217 experiment 0.846262641973625 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622446 chr2:101622447 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_38448 0 0 1 0 2 RPL31 chr2:101622533 5'GT 101622533 Upstream 87bp
chr2 101622447 101622447 1 + G A STAD 101622449 + 101622429 101622469 41 CATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAG CATACCGAATCCGTGTGCAGCTGTCCAGAAAACGTAATGAG < 41bp 1 0.224430086089566 1 0.549625992774963 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622449 chr2:101622447 nonsynonymous SNV 0.999 1 19 hm5C_associated_SNPs_38449 0 0 1 0 2 RPL31 chr2:101622421 3'AG 101622421 Downstream 27bp
chr2 101622447 101622447 1 + G A STAD 101622449 + 101622429 101622469 41 CATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAG CATACCGAATCCGTGTGCAGCTGTCCAGAAAACGTAATGAG < 41bp 1 0.224430086089566 1 0.549625992774963 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622449 chr2:101622447 nonsynonymous SNV 0.999 1 19 hm5C_associated_SNPs_38449 0 0 1 0 2 RPL31 chr2:101622533 5'GT 101622533 Upstream 87bp
chr2 101622447 101622447 1 + G A STAD 101622453 + 101622433 101622473 41 CCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGGATG CCGAATCCGTGTGCAGCTGTCCAGAAAACGTAATGAGGATG < 41bp 1 0.741202241436757 1 0.726750135421753 experiment 0.517595517126486 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622453 chr2:101622447 nonsynonymous SNV 0.999 1 15 hm5C_associated_SNPs_38450 0 0 1 0 2 RPL31 chr2:101622421 3'AG 101622421 Downstream 27bp
chr2 101622447 101622447 1 + G A STAD 101622453 + 101622433 101622473 41 CCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGGATG CCGAATCCGTGTGCAGCTGTCCAGAAAACGTAATGAGGATG < 41bp 1 0.741202241436757 1 0.726750135421753 experiment 0.517595517126486 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622453 chr2:101622447 nonsynonymous SNV 0.999 1 15 hm5C_associated_SNPs_38450 0 0 1 0 2 RPL31 chr2:101622533 5'GT 101622533 Upstream 87bp
chr2 101622447 101622447 1 + G A STAD 101622461 + 101622441 101622481 41 GTGTGCGGCTGTCCAGAAAACGTAATGAGGATGAAGATTCA GTGTGCAGCTGTCCAGAAAACGTAATGAGGATGAAGATTCA < 41bp 1 0.734812739533349 1 0.400820732116699 experiment 0.530374520933302 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622461 chr2:101622447 nonsynonymous SNV 0.999 1 7 hm5C_associated_SNPs_38451 0 0 1 0 2 RPL31 chr2:101622421 3'AG 101622421 Downstream 27bp
chr2 101622447 101622447 1 + G A STAD 101622461 + 101622441 101622481 41 GTGTGCGGCTGTCCAGAAAACGTAATGAGGATGAAGATTCA GTGTGCAGCTGTCCAGAAAACGTAATGAGGATGAAGATTCA < 41bp 1 0.734812739533349 1 0.400820732116699 experiment 0.530374520933302 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622461 chr2:101622447 nonsynonymous SNV 0.999 1 7 hm5C_associated_SNPs_38451 0 0 1 0 2 RPL31 chr2:101622533 5'GT 101622533 Upstream 87bp
chr8 21958382 21958382 1 + C T STAD 21958371 + 21958351 21958391 41 ACAGAGACCTGGAGGAAGACCCCTACTTCACCGACAGCTTC ACAGAGACCTGGAGGAAGACCCCTACTTCACTGACAGCTTC < 41bp 1 0.191480782806308 1 0.0960647165775299 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21958371 chr8:21958382 synonymous SNV . 0 32 hm5C_associated_SNPs_38453 0 0 1 0 1 FAM160B2 chr8:21958355 3'AG 21958355 Downstream 28bp
chr5 64267563 64267563 1 + A G STAD 64267545 + 64267525 64267565 41 TTTAGAGGAAGAAGCCCCTCCAGATGGTGCTGTTGCCGAAT TTTAGAGGAAGAAGCCCCTCCAGATGGTGCTGTTGCCGGAT < 41bp 1 0.266657463304671 1 0.756618797779083 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64267545 chr5:64267563 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_38454 0 0 1 0 2 CWC27 chr5:64267530 3'AG 64267530 Downstream 34bp
chr5 64267563 64267563 1 + A G STAD 64267545 + 64267525 64267565 41 TTTAGAGGAAGAAGCCCCTCCAGATGGTGCTGTTGCCGAAT TTTAGAGGAAGAAGCCCCTCCAGATGGTGCTGTTGCCGGAT < 41bp 1 0.266657463304671 1 0.756618797779083 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64267545 chr5:64267563 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_38454 0 0 1 0 2 CWC27 chr5:64267639 5'GT 64267639 Upstream 77bp
chr1 46739833 46739833 1 + G A STAD 46739819 + 46739799 46739839 41 TCCCCCTTCAGGTACTTATACGTCCGCCTGGATGGCACGAT TCCCCCTTCAGGTACTTATACGTCCGCCTGGATGACACGAT < 41bp 1 0.140731666818105 1 0.151619344949722 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739819 chr1:46739833 nonsynonymous SNV 0.928 4 35 hm5C_associated_SNPs_38455 0 0 1 0 2 RAD54L chr1:46739810 3'AG 46739810 Downstream 24bp
chr1 46739833 46739833 1 + G A STAD 46739819 + 46739799 46739839 41 TCCCCCTTCAGGTACTTATACGTCCGCCTGGATGGCACGAT TCCCCCTTCAGGTACTTATACGTCCGCCTGGATGACACGAT < 41bp 1 0.140731666818105 1 0.151619344949722 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739819 chr1:46739833 nonsynonymous SNV 0.928 4 35 hm5C_associated_SNPs_38455 0 0 1 0 2 RAD54L chr1:46739888 5'GT 46739888 Upstream 56bp
chr1 100480964 100480964 1 + A G STAD 100480954 + 100480934 100480974 41 TCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTC TCAGGGATATAACCGACTGACCTGGATAGTGGTTGTTCTTC < 41bp 1 0.233624832121249 1 0.0482563674449921 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC35A3 ENSG00000117620 CDS Human protein_coding chr1:100480954 chr1:100480964 synonymous SNV . 0 31 hm5C_associated_SNPs_38456 0 0 1 0 1 SLC35A3 chr1:100480976 5'GT 100480976 Upstream 13bp
chr22 40801789 40801789 1 + G A STAD 40801785 + 40801765 40801805 41 TCCAGACTGACCAGCGGGTCCTGCGCCACCTCATTGTCCAG TCCAGACTGACCAGCGGGTCCTGCACCACCTCATTGTCCAG < 41bp 1 0.680521573247556 1 0.175401329994202 experiment 0.638956853504888 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40801785 chr22:40801789 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_38457 0 0 1 0 1 SGSM3 chr22:40801848 5'GT 40801848 Upstream 60bp
chr19 50338287 50338287 1 + C T STAD 50338268 + 50338248 50338288 41 CTGCGTGCACTTCCCCCACACGGCGCCCTGTGAGGTGCGCG CTGCGTGCACTTCCCCCACACGGCGCCCTGTGAGGTGCGTG < 41bp 1 0.60961544649661 1 0.772870540618896 experiment 0.78076910700678 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50338268 chr19:50338287 synonymous SNV . 0 40 hm5C_associated_SNPs_38458 0 0 0 0 1 MED25 chr19:50338243 3'AG 50338243 Downstream 45bp
chr17 28772976 28772976 1 + A G STAD 28772959 + 28772939 28772979 41 ATCTGGCTCTGGCTCTTTATCGATACCATTCCTACAAAGAC ATCTGGCTCTGGCTCTTTATCGATACCATTCCTACAAGGAC < 41bp 1 0.548988464376769 1 0.78743714094162 experiment 0.902023071246462 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPD ENSG00000108582 CDS Human protein_coding chr17:28772959 chr17:28772976 synonymous SNV . 0 38 hm5C_associated_SNPs_38465 0 0 1 0 1 CPD chr17:28773038 5'GT 28773038 Upstream 63bp
chr1 228333735 228333735 1 + A G STAD 228333718 + 228333698 228333738 41 CCCCGATGGGTGACAGGTCTCTCTGCTAGATACCACGAGGA CCCCGATGGGTGACAGGTCTCTCTGCTAGATACCACGGGGA < 41bp 1 0.603183635889855 1 0.157963037490845 experiment 0.79363272822029 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333718 chr1:228333735 nonsynonymous SNV 0.250 3 38 hm5C_associated_SNPs_38466 0 0 1 0 2 GUK1 chr1:228333727 3'AG 228333727 Downstream 9bp
chr1 228333735 228333735 1 + A G STAD 228333718 + 228333698 228333738 41 CCCCGATGGGTGACAGGTCTCTCTGCTAGATACCACGAGGA CCCCGATGGGTGACAGGTCTCTCTGCTAGATACCACGGGGA < 41bp 1 0.603183635889855 1 0.157963037490845 experiment 0.79363272822029 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333718 chr1:228333735 nonsynonymous SNV 0.250 3 38 hm5C_associated_SNPs_38466 0 0 1 0 2 GUK1 chr1:228333768 5'GT 228333768 Upstream 34bp
chr9 131847002 131847002 1 + C A STAD 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTCAGCCCTGTATTTGTCATAGTCGGTTTCGTGACCCT < 41bp 1 0.454370590059066 1 0.588920533657074 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131847002 synonymous SNV . 0 24 hm5C_associated_SNPs_38468 0 0 1 0 2 DOLPP1 chr9:131846947 3'AG 131846947 Downstream 56bp
chr9 131847002 131847002 1 + C A STAD 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTCAGCCCTGTATTTGTCATAGTCGGTTTCGTGACCCT < 41bp 1 0.454370590059066 1 0.588920533657074 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131847002 synonymous SNV . 0 24 hm5C_associated_SNPs_38468 0 0 1 0 2 DOLPP1 chr9:131847047 5'GT 131847047 Upstream 46bp
chr12 31244682 31244682 1 + G T STAD 31244687 + 31244667 31244707 41 CTATCAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGG CTATCAGATGCTGCTTCATGCGGCCACTCGGCAGGCCGCGG < 41bp 1 0.559649946924151 1 0.270456552505493 experiment 0.880700106151699 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244687 chr12:31244682 synonymous SNV . 0 16 hm5C_associated_SNPs_38469 0 0 1 0 1 DDX11 chr12:31244653 3'AG 31244653 Downstream 30bp
chr12 31244682 31244682 1 + G T STAD 31244691 + 31244671 31244711 41 CAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGGGCAT CAGATGCTGCTTCATGCGGCCACTCGGCAGGCCGCGGGCAT < 41bp 1 0.194383572681477 1 0.0303165018558502 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244691 chr12:31244682 synonymous SNV . 0 12 hm5C_associated_SNPs_38470 0 0 1 0 1 DDX11 chr12:31244653 3'AG 31244653 Downstream 30bp
chr4 126398337 126398337 1 + T A STAD 126398352 + 126398332 126398372 41 AGAGTTACAGTTGGAGGTATCAGATCTCTAGAACCAATCCT AGAGTAACAGTTGGAGGTATCAGATCTCTAGAACCAATCCT < 41bp 1 0.149611842195341 1 0.83440774679184 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126398352 chr4:126398337 synonymous SNV . 0 6 hm5C_associated_SNPs_38471 0 0 1 0 1 FAT4 chr4:126398310 3'AG 126398310 Downstream 28bp
chr16 722946 722946 1 + C A STAD 722951 + 722931 722971 41 CATTACATGGACGGGCAGACCCCCTGCCTCTTTGTCTCCTC CATTACATGGACGGGAAGACCCCCTGCCTCTTTGTCTCCTC < 41bp 1 0.395310290842991 1 0.0641034245491028 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:722951 chr16:722946 nonsynonymous SNV 0.984 0 16 hm5C_associated_SNPs_38472 0 0 1 0 1 RHOT2 chr16:722928 3'AG 722928 Downstream 19bp
chr12 132546656 132546656 1 + C T STAD 132546658 + 132546638 132546678 41 CTGTTTGCCTTTTCTAGACGCCGGGAGGCTCTGCTCCCGCC CTGTTTGCCTTTTCTAGATGCCGGGAGGCTCTGCTCCCGCC < 41bp 1 0.288769079720772 1 0.882383227348328 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546658 chr12:132546656 nonsynonymous SNV 0.233 4 19 hm5C_associated_SNPs_38473 0 0 0 0 1 EP400 chr12:132546655 3'AG 132546655 Downstream 2bp
chr1 22336257 22336257 1 + T C STAD 22336262 + 22336242 22336282 41 CTGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTG CTGGCAGGTCCACGGCGTGACCAGCTTTGTTTCTGCCTTTG < 41bp 1 0.270952816727918 1 0.0798313021659851 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336262 chr1:22336257 synonymous SNV . 0 16 hm5C_associated_SNPs_38474 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 94bp
chr1 22336257 22336257 1 + T C STAD 22336263 + 22336243 22336283 41 TGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGG TGGCAGGTCCACGGCGTGACCAGCTTTGTTTCTGCCTTTGG < 41bp 1 0.644498445477231 1 0.295169174671173 experiment 0.711003109045539 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336263 chr1:22336257 synonymous SNV . 0 15 hm5C_associated_SNPs_38475 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 94bp
chr1 22336257 22336257 1 + T C STAD 22336266 + 22336246 22336286 41 CAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTG CAGGTCCACGGCGTGACCAGCTTTGTTTCTGCCTTTGGCTG < 41bp 1 0.164285229871514 1 0.0653034448623657 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336266 chr1:22336257 synonymous SNV . 0 12 hm5C_associated_SNPs_38476 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 94bp
chr1 22336257 22336257 1 + T C STAD 22336274 + 22336254 22336294 41 CGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCA CGGCGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCA < 41bp 1 0.573884127690038 1 0.0659344792366028 experiment 0.852231744619924 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336274 chr1:22336257 synonymous SNV . 0 4 hm5C_associated_SNPs_38477 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 94bp
chr1 22336257 22336257 1 + T C STAD 22336277 + 22336257 22336297 41 TGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCT CGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCT < 41bp 1 0.0449917060272343 1 0.0124619603157043 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336277 chr1:22336257 synonymous SNV . 0 1 hm5C_associated_SNPs_38478 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 94bp
chr1 22336254 22336254 1 + C T STAD 22336262 + 22336242 22336282 41 CTGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTG CTGGCAGGTCCATGGTGTGACCAGCTTTGTTTCTGCCTTTG < 41bp 1 0.290763890230872 1 0.0938362777233124 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336262 chr1:22336254 synonymous SNV . 0 13 hm5C_associated_SNPs_38479 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 97bp
chr1 22336254 22336254 1 + C T STAD 22336263 + 22336243 22336283 41 TGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGG TGGCAGGTCCATGGTGTGACCAGCTTTGTTTCTGCCTTTGG < 41bp 1 0.592529077798783 1 0.202183783054352 experiment 0.814941844402434 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336263 chr1:22336254 synonymous SNV . 0 12 hm5C_associated_SNPs_38480 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 97bp
chr1 22336254 22336254 1 + C T STAD 22336266 + 22336246 22336286 41 CAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTG CAGGTCCATGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTG < 41bp 1 0.14776648241537 1 0.0616121292114258 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336266 chr1:22336254 synonymous SNV . 0 9 hm5C_associated_SNPs_38481 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 97bp
chr1 22336254 22336254 1 + C T STAD 22336274 + 22336254 22336294 41 CGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCA TGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCA < 41bp 1 0.580221207151357 1 0.0966429114341736 experiment 0.839557585697287 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336274 chr1:22336254 synonymous SNV . 0 1 hm5C_associated_SNPs_38482 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 97bp
chr6 28329219 28329219 1 + C A STAD 28329230 + 28329210 28329250 41 AGCATGAATCTGTGGGATCCCAGCCTTTACAAGATAGAGGT AGCATGAATATGTGGGATCCCAGCCTTTACAAGATAGAGGT < 41bp 1 0.469544814929815 1 0.370745182037354 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28329230 chr6:28329219 nonsynonymous SNV 0.716 2 10 hm5C_associated_SNPs_38484 0 0 1 0 1 ZKSCAN3 chr6:28329248 5'GT 28329248 Upstream 30bp
chr5 149754318 149754318 1 + G A STAD 149754323 + 149754303 149754343 41 GCGGGGAAGCGGGAGGAGGACTCGCAGAGCAGCAGCGAGGA GCGGGGAAGCGGGAGAAGGACTCGCAGAGCAGCAGCGAGGA < 41bp 1 0.571417169566566 1 0.310339391231537 experiment 0.857165660866869 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754323 chr5:149754318 nonsynonymous SNV 0.001 0 16 hm5C_associated_SNPs_38486 0 0 1 0 1 TCOF1 chr5:149754374 5'GT 149754374 Upstream 57bp
chr5 149754318 149754318 1 + G A STAD 149754325 + 149754305 149754345 41 GGGGAAGCGGGAGGAGGACTCGCAGAGCAGCAGCGAGGAAT GGGGAAGCGGGAGAAGGACTCGCAGAGCAGCAGCGAGGAAT < 41bp 1 0.644720881699992 1 0.507859885692596 experiment 0.710558236600016 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754325 chr5:149754318 nonsynonymous SNV 0.001 0 14 hm5C_associated_SNPs_38487 0 0 1 0 1 TCOF1 chr5:149754374 5'GT 149754374 Upstream 57bp
chr5 149754318 149754318 1 + G A STAD 149754335 + 149754315 149754355 41 GAGGAGGACTCGCAGAGCAGCAGCGAGGAATCGGACAGTGA GAGAAGGACTCGCAGAGCAGCAGCGAGGAATCGGACAGTGA < 41bp 1 0.519460183543047 1 0.272040516138077 experiment 0.961079632913906 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754335 chr5:149754318 nonsynonymous SNV 0.001 0 4 hm5C_associated_SNPs_38488 0 0 1 0 1 TCOF1 chr5:149754374 5'GT 149754374 Upstream 57bp
chr3 47361166 47361166 1 + C T STAD 47361152 + 47361132 47361172 41 TTTGCCCACAGATTGGGGACCACAAATTCAGTGCCCACCGG TTTGCCCACAGATTGGGGACCACAAATTCAGTGCTCACCGG < 41bp 1 0.524321146724067 1 0.327611416578293 experiment 0.951357706551865 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47361152 chr3:47361166 synonymous SNV . 0 35 hm5C_associated_SNPs_38489 0 0 1 0 1 KLHL18 chr3:47361143 3'AG 47361143 Downstream 24bp
chr5 10254907 10254907 1 + G C STAD 10254899 + 10254879 10254919 41 TTGCCAAGCTGATGGTGGAACTGTCCAAGTCTCAGGATGAT TTGCCAAGCTGATGGTGGAACTGTCCAACTCTCAGGATGAT < 41bp 1 0.130287275471439 1 0.0695640444755554 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753;ENSG00000150753 exonic;splicing Human protein_coding chr5:10254899 chr5:10254907 nonsynonymous SNV 0.999 2 29 hm5C_associated_SNPs_38490 0 0 1 0 1 CCT5 chr5:10254950 5'GT 10254950 Upstream 44bp
chr5 10254907 10254907 1 + G C STAD 10254903 + 10254883 10254923 41 CAAGCTGATGGTGGAACTGTCCAAGTCTCAGGATGATGAAA CAAGCTGATGGTGGAACTGTCCAACTCTCAGGATGATGAAA < 41bp 1 0.0946621568719132 1 0.0474712252616882 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753;ENSG00000150753 exonic;splicing Human protein_coding chr5:10254903 chr5:10254907 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_38491 0 0 1 0 1 CCT5 chr5:10254950 5'GT 10254950 Upstream 44bp
chr5 10254907 10254907 1 + G C STAD 10254909 + 10254889 10254929 41 GATGGTGGAACTGTCCAAGTCTCAGGATGATGAAATTGGAG GATGGTGGAACTGTCCAACTCTCAGGATGATGAAATTGGAG < 41bp 1 0.628135977588872 1 0.34593066573143 experiment 0.743728044822256 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753;ENSG00000150753 exonic;splicing Human protein_coding chr5:10254909 chr5:10254907 nonsynonymous SNV 0.999 2 19 hm5C_associated_SNPs_38492 0 0 1 0 1 CCT5 chr5:10254950 5'GT 10254950 Upstream 44bp
chr5 68692326 68692326 1 + A C STAD 68692324 + 68692304 68692344 41 TCATTGCCAAGGAGGAGGATCAAGTTTTCGACCCTTGCACA TCATTGCCAAGGAGGAGGATCACGTTTTCGACCCTTGCACA < 41bp 1 0.729589927582957 1 0.338299751281738 experiment 0.540820144834087 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD17 ENSG00000152942 CDS Human protein_coding chr5:68692324 chr5:68692326 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_38495 0 0 1 0 1 RAD17 chr5:68692373 5'GT 68692373 Upstream 48bp
chr20 35857032 35857032 1 + A C STAD 35857050 + 35857030 35857070 41 CAAGTTTGAACTGGATACCTCTGAAAGAAAGATTGAATTTG CACGTTTGAACTGGATACCTCTGAAAGAAAGATTGAATTTG < 41bp 1 0.604397333812745 1 0.39544203877449 experiment 0.791205332374511 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35857050 chr20:35857032 nonsynonymous SNV 1.000 2 3 hm5C_associated_SNPs_38496 0 0 1 0 1 RPN2 chr20:35856953 3'AG 35856953 Downstream 80bp
chr16 23578341 23578341 1 + A C STAD 23578358 + 23578338 23578378 41 TAAAAAATGTGGTCAGTGAACCTATCGAAGGACATGAAGAC TAACAAATGTGGTCAGTGAACCTATCGAAGGACATGAAGAC < 41bp 1 0.0724021704920738 1 0.0829088389873505 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBFD1 ENSG00000103353 CDS Human protein_coding chr16:23578358 chr16:23578341 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_38497 0 0 1 0 2 UBFD1 chr16:23578308 3'AG 23578308 Downstream 34bp
chr16 23578341 23578341 1 + A C STAD 23578358 + 23578338 23578378 41 TAAAAAATGTGGTCAGTGAACCTATCGAAGGACATGAAGAC TAACAAATGTGGTCAGTGAACCTATCGAAGGACATGAAGAC < 41bp 1 0.0724021704920738 1 0.0829088389873505 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBFD1 ENSG00000103353 CDS Human protein_coding chr16:23578358 chr16:23578341 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_38497 0 0 1 0 2 UBFD1 chr16:23578390 5'GT 23578390 Upstream 50bp
chr1 70700393 70700393 1 + A G STAD 70700412 + 70700392 70700432 41 CACTGGCTGCTTTGGGGGCTCCTACTCTTGATCCTGCCCTT CGCTGGCTGCTTTGGGGGCTCCTACTCTTGATCCTGCCCTT < 41bp 1 0.322363253738931 1 0.126441150903702 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70700412 chr1:70700393 synonymous SNV . 0 2 hm5C_associated_SNPs_38498 0 0 1 0 2 SRSF11 chr1:70700379 3'AG 70700379 Downstream 15bp
chr1 70700393 70700393 1 + A G STAD 70700412 + 70700392 70700432 41 CACTGGCTGCTTTGGGGGCTCCTACTCTTGATCCTGCCCTT CGCTGGCTGCTTTGGGGGCTCCTACTCTTGATCCTGCCCTT < 41bp 1 0.322363253738931 1 0.126441150903702 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70700412 chr1:70700393 synonymous SNV . 0 2 hm5C_associated_SNPs_38498 0 0 1 0 2 SRSF11 chr1:70700471 5'GT 70700471 Upstream 79bp
chr1 7796536 7796536 1 + A C STAD 7796544 + 7796524 7796564 41 TTCCGCGGAATGACCCTACTCCACCTGGCCGCTGCCCAGGG TTCCGCGGAATGCCCCTACTCCACCTGGCCGCTGCCCAGGG < 41bp 1 0.309839056754553 1 0.388527274131775 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMTA1 ENSG00000171735 CDS Human protein_coding chr1:7796544 chr1:7796536 nonsynonymous SNV 0.990 4 13 hm5C_associated_SNPs_38499 0 0 1 0 1 CAMTA1 chr1:7796600 5'GT 7796600 Upstream 65bp
chr15 43484948 43484948 1 + G T STAD 43484957 + 43484937 43484977 41 TTAGTGTGGATGATTTGGCTCTGAGCATATATCCACCTATG TTAGTGTGGATTATTTGGCTCTGAGCATATATCCACCTATG < 41bp 1 0.537151074996925 1 0.126489460468292 experiment 0.925697850006149 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCNDBP1 ENSG00000166946 CDS Human protein_coding chr15:43484957 chr15:43484948 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_38501 0 0 1 0 1 CCNDBP1 chr15:43485001 5'GT 43485001 Upstream 54bp
chr2 27663749 27663749 1 + T C STAD 27663756 + 27663736 27663776 41 GTGACATCACCTGTCGTGCCCCCCTCTGTCAAGACTCCGAC GTGACATCACCTGCCGTGCCCCCCTCTGTCAAGACTCCGAC < 41bp 1 0.247355111475124 1 0.0127202272415161 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663756 chr2:27663749 nonsynonymous SNV 0.999 1 14 hm5C_associated_SNPs_38504 0 0 0 0 2 NRBP1 chr2:27663672 3'AG 27663672 Downstream 78bp
chr2 27663749 27663749 1 + T C STAD 27663756 + 27663736 27663776 41 GTGACATCACCTGTCGTGCCCCCCTCTGTCAAGACTCCGAC GTGACATCACCTGCCGTGCCCCCCTCTGTCAAGACTCCGAC < 41bp 1 0.247355111475124 1 0.0127202272415161 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663756 chr2:27663749 nonsynonymous SNV 0.999 1 14 hm5C_associated_SNPs_38504 0 0 0 0 2 NRBP1 chr2:27663807 5'GT 27663807 Upstream 59bp
chr10 60037071 60037071 1 + A G STAD 60037076 + 60037056 60037096 41 TACTGCCGTTGTTGGAGGTCCAAAAAGGTGAGGAAAGCAAT TACTGCCGTTGTTGGGGGTCCAAAAAGGTGAGGAAAGCAAT < 41bp 1 0.60684337035211 1 0.408981829881668 experiment 0.786313259295779 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CISD1 ENSG00000122873 CDS Human protein_coding chr10:60037076 chr10:60037071 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_38505 0 0 1 0 1 CISD1 chr10:60037082 5'GT 60037082 Upstream 12bp
chr12 71977612 71977612 1 + G A STAD 71977616 + 71977596 71977636 41 GAACATGCTCACGGGAGTCTCCAGTGCCGTGCTGGCTGGTG GAACATGCTCACGGGAATCTCCAGTGCCGTGCTGGCTGGTG < 41bp 1 0.455299447558409 1 0.664390444755554 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LGR5 ENSG00000139292 CDS Human protein_coding chr12:71977616 chr12:71977612 nonsynonymous SNV 0.002 1 17 hm5C_associated_SNPs_38506 0 0 1 0 1 LGR5 chr12:71977692 5'GT 71977692 Upstream 81bp
chr20 36149740 36149740 1 - G A STAD 36149743 - 36149723 36149763 41 TTCAGCCGAGGCCGCCGCCACTGCCGCCATGGTTCCAAGAA TTCAGCCGAGGCCGCCGCCACTGTCGCCATGGTTCCAAGAA < 41bp 1 0.26393677171855 1 0.152227014303207 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NNAT ENSG00000053438 CDS Human other chr20:36149743 chr20:36149740 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_38507 0 0 1 0 1 BLCAP;NNAT chr20:36149721 5'GT 36149721 Upstream 20bp
chr20 36149740 36149740 1 - G A STAD 36149745 - 36149725 36149765 41 AGTTCAGCCGAGGCCGCCGCCACTGCCGCCATGGTTCCAAG AGTTCAGCCGAGGCCGCCGCCACTGTCGCCATGGTTCCAAG < 41bp 1 0.501976554931873 1 0.415088057518005 experiment 0.996046890136254 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NNAT ENSG00000053438 CDS Human other chr20:36149745 chr20:36149740 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_38508 0 0 1 0 1 BLCAP;NNAT chr20:36149721 5'GT 36149721 Upstream 20bp
chr20 36149740 36149740 1 - G A STAD 36149746 - 36149726 36149766 41 CAGTTCAGCCGAGGCCGCCGCCACTGCCGCCATGGTTCCAA CAGTTCAGCCGAGGCCGCCGCCACTGTCGCCATGGTTCCAA < 41bp 1 0.2813530620623 1 0.0954544842243195 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NNAT ENSG00000053438 CDS Human other chr20:36149746 chr20:36149740 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_38509 0 0 1 0 1 BLCAP;NNAT chr20:36149721 5'GT 36149721 Upstream 20bp
chr20 36149740 36149740 1 - G A STAD 36149748 - 36149728 36149768 41 AGCAGTTCAGCCGAGGCCGCCGCCACTGCCGCCATGGTTCC AGCAGTTCAGCCGAGGCCGCCGCCACTGTCGCCATGGTTCC < 41bp 1 0.594470526607304 1 0.25243067741394 experiment 0.811058946785392 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NNAT ENSG00000053438 CDS Human other chr20:36149748 chr20:36149740 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_38510 0 0 1 0 1 BLCAP;NNAT chr20:36149721 5'GT 36149721 Upstream 20bp
chr20 36149740 36149740 1 - G A STAD 36149751 - 36149731 36149771 41 ATGAGCAGTTCAGCCGAGGCCGCCGCCACTGCCGCCATGGT ATGAGCAGTTCAGCCGAGGCCGCCGCCACTGTCGCCATGGT < 41bp 1 0.578018626380225 1 0.474822461605072 experiment 0.84396274723955 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NNAT ENSG00000053438 CDS Human other chr20:36149751 chr20:36149740 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_38511 0 0 1 0 1 BLCAP;NNAT chr20:36149721 5'GT 36149721 Upstream 20bp
chr20 36149740 36149740 1 - G A STAD 36149752 - 36149732 36149772 41 GATGAGCAGTTCAGCCGAGGCCGCCGCCACTGCCGCCATGG GATGAGCAGTTCAGCCGAGGCCGCCGCCACTGTCGCCATGG < 41bp 1 0.280031402830048 1 0.15801864862442 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NNAT ENSG00000053438 CDS Human other chr20:36149752 chr20:36149740 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_38512 0 0 1 0 1 BLCAP;NNAT chr20:36149721 5'GT 36149721 Upstream 20bp
chr1 163310207 163310207 1 + C T STAD 163310211 + 163310191 163310231 41 ATATTTCAGAGAAAACCAAGCGTTTGGTAAACATCTTTTCT ATATTTCAGAGAAAACTAAGCGTTTGGTAAACATCTTTTCT < 41bp 1 0.0755122088253794 1 0.0872383117675781 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUF2 ENSG00000143228 CDS Human protein_coding chr1:163310211 chr1:163310207 nonsynonymous SNV . 0 17 hm5C_associated_SNPs_38513 0 0 1 0 2 NUF2 chr1:163310154 3'AG 163310154 Downstream 54bp
chr1 163310207 163310207 1 + C T STAD 163310211 + 163310191 163310231 41 ATATTTCAGAGAAAACCAAGCGTTTGGTAAACATCTTTTCT ATATTTCAGAGAAAACTAAGCGTTTGGTAAACATCTTTTCT < 41bp 1 0.0755122088253794 1 0.0872383117675781 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUF2 ENSG00000143228 CDS Human protein_coding chr1:163310211 chr1:163310207 nonsynonymous SNV . 0 17 hm5C_associated_SNPs_38513 0 0 1 0 2 NUF2 chr1:163310216 5'GT 163310216 Upstream 10bp
chr1 11894557 11894557 1 + G A STAD 11894546 + 11894526 11894566 41 TGCTTTGTGTTTCAGGTGGCCAAATGGACAGGGGACTTTTT TGCTTTGTGTTTCAGGTGGCCAAATGGACAGAGGACTTTTT < 41bp 1 0.101594801725671 1 0.805831372737885 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11894546 chr1:11894557 nonsynonymous SNV 0.976 5 32 hm5C_associated_SNPs_38514 0 0 1 0 2 CLCN6 chr1:11894541 3'AG 11894541 Downstream 17bp
chr1 11894557 11894557 1 + G A STAD 11894546 + 11894526 11894566 41 TGCTTTGTGTTTCAGGTGGCCAAATGGACAGGGGACTTTTT TGCTTTGTGTTTCAGGTGGCCAAATGGACAGAGGACTTTTT < 41bp 1 0.101594801725671 1 0.805831372737885 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11894546 chr1:11894557 nonsynonymous SNV 0.976 5 32 hm5C_associated_SNPs_38514 0 0 1 0 2 CLCN6 chr1:11894647 5'GT 11894647 Upstream 91bp
chr17 80529613 80529613 1 + C T STAD 80529633 + 80529613 80529653 41 CGCCTTACTCCTACGCGCAGCTGATAGTTCAGGCGATTACG TGCCTTACTCCTACGCGCAGCTGATAGTTCAGGCGATTACG < 41bp 1 0.0862406688951919 1 0.0618610680103302 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80529633 chr17:80529613 nonsynonymous SNV 0.952 5 1 hm5C_associated_SNPs_38515 0 0 1 0 1 FOXK2 chr17:80529600 3'AG 80529600 Downstream 14bp
chr22 29695771 29695771 1 + C G STAD 29695781 + 29695761 29695801 41 CCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG CCCTGGGGGGGCCCCTGGACCTTTGATGGAACAGATGGGAG < 41bp 1 0.457867017759768 1 0.364406079053879 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695781 chr22:29695771 nonsynonymous SNV 0.985 2 11 hm5C_associated_SNPs_38516 0 0 1 0 1 EWSR1 chr22:29695841 5'GT 29695841 Upstream 71bp
chr7 18630000 18630000 1 + C A STAD 18629992 + 18629972 18630012 41 TTCTAGCCATAAAACAGCAACAAGAACTCCTAGAAAAGGAG TTCTAGCCATAAAACAGCAACAAGAACTACTAGAAAAGGAG < 41bp 1 0.385631223629193 1 0.73090124130249 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HDAC9 ENSG00000048052 CDS Human protein_coding chr7:18629992 chr7:18630000 synonymous SNV . 0 29 hm5C_associated_SNPs_38519 0 0 0 0 1 HDAC9 chr7:18629959 3'AG 18629959 Downstream 42bp
chr16 31131803 31131803 1 + C T STAD 31131787 + 31131767 31131807 41 GAGCAGCCTGAGCGCAAGATCACTCGCAACCAAAAGCGCAA GAGCAGCCTGAGCGCAAGATCACTCGCAACCAAAAGTGCAA < 41bp 1 0.243940515246728 1 0.0652007162570953 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KAT8 ENSG00000103510 CDS Human protein_coding chr16:31131787 chr16:31131803 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_38520 0 0 1 0 1 KAT8 chr16:31131835 5'GT 31131835 Upstream 33bp
chr13 73327858 73327858 1 + G T STAD 73327849 + 73327829 73327869 41 TGGATAGTGGCTATAATACGCAGAATTGTGGAAGCAATATT TGGATAGTGGCTATAATACGCAGAATTGTTGAAGCAATATT < 41bp 1 0.577146206074956 1 0.130265653133392 experiment 0.845707587850088 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BORA ENSG00000136122 CDS Human protein_coding chr13:73327849 chr13:73327858 stopgain 0.976 1 30 hm5C_associated_SNPs_38521 0 0 1 0 1 BORA chr13:73327828 3'AG 73327828 Downstream 31bp
chr11 19970272 19970272 1 + C T STAD 19970261 + 19970241 19970281 41 TTGGAAACCACGTTTGACACCAATGTCACCACGGAGATGAG TTGGAAACCACGTTTGACACCAATGTCACCATGGAGATGAG < 41bp 1 0.0849944009533857 1 0.0772942900657654 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:19970261 chr11:19970272 nonsynonymous SNV 0.961 4 32 hm5C_associated_SNPs_38522 0 0 0 0 1 NAV2 chr11:19970237 3'AG 19970237 Downstream 36bp
chr19 41077990 41077990 1 + G T STAD 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GGACTCCAAGGTCCCGGCATCCGGGAGCACACACGGTGGGG < 41bp 1 0.323750210656794 1 0.858221411705017 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41077990 nonsynonymous SNV 0.692 1 12 hm5C_associated_SNPs_38523 0 0 1 0 1 SPTBN4 chr19:41077925 3'AG 41077925 Downstream 66bp
chr20 34832803 34832803 1 + C T STAD 34832788 + 34832768 34832808 41 TACCACCAGCTTGGTGAGATCCCCGCTGACTTCTTCGTAGA TACCACCAGCTTGGTGAGATCCCCGCTGACTTCTTTGTAGA < 41bp 1 0.36608173849349 1 0.514399707317352 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control AAR2 ENSG00000131043 CDS Human protein_coding chr20:34832788 chr20:34832803 synonymous SNV . 0 36 hm5C_associated_SNPs_38524 0 0 1 0 1 AAR2 chr20:34832848 5'GT 34832848 Upstream 46bp
chr1 82372819 82372819 1 + A G STAD 82372824 + 82372804 82372844 41 TTGAGAGCGCTAACTATGGTCGGACGGATGACAAGATTTGT TTGAGAGCGCTAACTGTGGTCGGACGGATGACAAGATTTGT < 41bp 1 0.285689310414939 1 0.76971447467804 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRL2 ENSG00000117114 CDS Human protein_coding chr1:82372824 chr1:82372819 nonsynonymous SNV 0.918 4 16 hm5C_associated_SNPs_38525 0 0 1 0 1 ADGRL2 chr1:82372915 5'GT 82372915 Upstream 97bp
chr7 45688316 45688316 1 + C T STAD 45688321 + 45688301 45688341 41 GGACTGCTACTACTGCGTGTCGGGCCTCACCCAGCCCAAGA GGACTGCTACTACTGTGTGTCGGGCCTCACCCAGCCCAAGA < 41bp 1 0.478721309118045 1 0.917625546455383 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45688321 chr7:45688316 synonymous SNV . 0 16 hm5C_associated_SNPs_38531 0 0 1 0 2 ADCY1 chr7:45688269 3'AG 45688269 Downstream 48bp
chr7 45688316 45688316 1 + C T STAD 45688321 + 45688301 45688341 41 GGACTGCTACTACTGCGTGTCGGGCCTCACCCAGCCCAAGA GGACTGCTACTACTGTGTGTCGGGCCTCACCCAGCCCAAGA < 41bp 1 0.478721309118045 1 0.917625546455383 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45688321 chr7:45688316 synonymous SNV . 0 16 hm5C_associated_SNPs_38531 0 0 1 0 2 ADCY1 chr7:45688396 5'GT 45688396 Upstream 81bp
chr8 110569190 110569190 1 + G T STAD 110569185 + 110569165 110569205 41 TTGTTATTAAGAAGAGAGAACCATTGAATTTTGGCATCCCA TTGTTATTAAGAAGAGAGAACCATTTAATTTTGGCATCCCA < 41bp 1 0.0298427892199692 1 0.182155042886734 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110569185 chr8:110569190 nonsynonymous SNV 0.996 1 26 hm5C_associated_SNPs_38533 0 0 1 0 2 EBAG9 chr8:110569164 3'AG 110569164 Downstream 27bp
chr8 110569190 110569190 1 + G T STAD 110569185 + 110569165 110569205 41 TTGTTATTAAGAAGAGAGAACCATTGAATTTTGGCATCCCA TTGTTATTAAGAAGAGAGAACCATTTAATTTTGGCATCCCA < 41bp 1 0.0298427892199692 1 0.182155042886734 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110569185 chr8:110569190 nonsynonymous SNV 0.996 1 26 hm5C_associated_SNPs_38533 0 0 1 0 2 EBAG9 chr8:110569271 5'GT 110569271 Upstream 82bp
chr19 51227348 51227348 1 + C T STAD 51227338 + 51227318 51227358 41 CCCACCCCTGAGGACATCGTCACTTACATCCGTGAGTAACC CCCACCCCTGAGGACATCGTCACTTACATCTGTGAGTAACC < 41bp 1 0.124094910874097 1 0.0584205985069275 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CLEC11A ENSG00000105472 CDS Human protein_coding chr19:51227338 chr19:51227348 synonymous SNV . 0 31 hm5C_associated_SNPs_38536 0 0 0 0 1 CLEC11A chr19:51227348 5'GT 51227348 Upstream 1bp
chr15 89172603 89172603 1 + G A STAD 89172606 + 89172586 89172626 41 CCCGGCCTCCACACCCGGGCCCGGGTCTCTCTAAAGGACCT CCCGGCCTCCACACCCGAGCCCGGGTCTCTCTAAAGGACCT < 41bp 1 0.492801667447392 1 0.345205962657928 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AEN ENSG00000181026 CDS Human protein_coding chr15:89172606 chr15:89172603 synonymous SNV . 0 18 hm5C_associated_SNPs_38537 0 0 1 0 1 AEN chr15:89172657 5'GT 89172657 Upstream 55bp
chr5 65105422 65105422 1 + G A STAD 65105431 + 65105411 65105451 41 GAAAATTGGGTGTGGGACGTCGATTCCCTCCGAAGATTGTC GAAAATTGGGTATGGGACGTCGATTCCCTCCGAAGATTGTC < 41bp 1 0.098385509193709 1 0.191223442554474 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLN ENSG00000123213 CDS Human protein_coding chr5:65105431 chr5:65105422 synonymous SNV . 0 12 hm5C_associated_SNPs_38538 0 0 1 0 1 NLN chr5:65105342 3'AG 65105342 Downstream 81bp
chr1 24083515 24083515 1 + T C STAD 24083522 + 24083502 24083542 41 TTAACCCCAGCCCTGAGGAGCCGGCCTATGATGGCCCAAGC TTAACCCCAGCCCCGAGGAGCCGGCCTATGATGGCCCAAGC < 41bp 1 0.224186181436461 1 0.690634608268738 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ELOA ENSG00000011007 CDS Human protein_coding chr1:24083522 chr1:24083515 synonymous SNV . 0 14 hm5C_associated_SNPs_38539 0 0 1 0 1 ELOA chr1:24083443 3'AG 24083443 Downstream 73bp
chr10 105174906 105174906 1 + C T STAD 105174899 + 105174879 105174919 41 TACCACATCGGGGATGAGGTCAAGTGCCGGGTGAGCCTCCT TACCACATCGGGGATGAGGTCAAGTGCTGGGTGAGCCTCCT < 41bp 1 0.464736090011421 1 0.754418551921844 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105174899 chr10:105174906 nonsynonymous SNV 0.986 4 28 hm5C_associated_SNPs_38545 0 0 1 0 1 PDCD11 chr10:105174908 5'GT 105174908 Upstream 3bp
chr19 36594075 36594075 1 + G T STAD 36594068 + 36594048 36594088 41 GTGCCTGCAGGTCCTCGCTGCAGGGAAGGCTGAAGAGACCC GTGCCTGCAGGTCCTCGCTGCAGGGAATGCTGAAGAGACCC < 41bp 1 0.551520586526459 1 0.896822929382324 experiment 0.896958826947081 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36594068 chr19:36594075 nonsynonymous SNV 0.022 1 28 hm5C_associated_SNPs_38546 0 0 1 0 2 WDR62 chr19:36594058 3'AG 36594058 Downstream 18bp
chr19 36594075 36594075 1 + G T STAD 36594068 + 36594048 36594088 41 GTGCCTGCAGGTCCTCGCTGCAGGGAAGGCTGAAGAGACCC GTGCCTGCAGGTCCTCGCTGCAGGGAATGCTGAAGAGACCC < 41bp 1 0.551520586526459 1 0.896822929382324 experiment 0.896958826947081 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36594068 chr19:36594075 nonsynonymous SNV 0.022 1 28 hm5C_associated_SNPs_38546 0 0 1 0 2 WDR62 chr19:36594109 5'GT 36594109 Upstream 35bp
chr18 19209067 19209067 1 + C T STAD 19209061 + 19209041 19209081 41 GAAGAGGAAGAGGAAGAGGACGTGGCCGTGGCAGAGGAAGA GAAGAGGAAGAGGAAGAGGACGTGGCTGTGGCAGAGGAAGA < 41bp 1 0.67353291638633 1 0.413208693265915 experiment 0.652934167227341 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRPD1 ENSG00000167088 CDS Human protein_coding chr18:19209061 chr18:19209067 nonsynonymous SNV 0.998 4 27 hm5C_associated_SNPs_38549 0 0 1 0 1 SNRPD1 chr18:19209023 3'AG 19209023 Downstream 45bp
chr17 21215543 21215543 1 + G A STAD 21215563 + 21215543 21215583 41 GCTCCCAGCCGACCGTTTCTCCCCCGAGTTTGTGGACTTCA ACTCCCAGCCGACCGTTTCTCCCCCGAGTTTGTGGACTTCA < 41bp 1 0.27204127366013 1 0.0642624497413635 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21215563 chr17:21215543 synonymous SNV . 0 1 hm5C_associated_SNPs_38551 0 0 0 0 2 MAP2K3 chr17:21215454 3'AG 21215454 Downstream 90bp
chr17 21215543 21215543 1 + G A STAD 21215563 + 21215543 21215583 41 GCTCCCAGCCGACCGTTTCTCCCCCGAGTTTGTGGACTTCA ACTCCCAGCCGACCGTTTCTCCCCCGAGTTTGTGGACTTCA < 41bp 1 0.27204127366013 1 0.0642624497413635 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21215563 chr17:21215543 synonymous SNV . 0 1 hm5C_associated_SNPs_38551 0 0 0 0 2 MAP2K3 chr17:21215593 5'GT 21215593 Upstream 51bp
chr22 39826095 39826095 1 + C A STAD 39826113 + 39826093 39826133 41 CTCTTCCGCTCCCGGCCCGCCCACTCGCTCCCGCCTGGCGA CTATTCCGCTCCCGGCCCGCCCACTCGCTCCCGCCTGGCGA < 41bp 1 0.0935544226861947 1 0.172200232744217 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TAB1 ENSG00000100324 CDS Human protein_coding chr22:39826113 chr22:39826095 synonymous SNV . 0 3 hm5C_associated_SNPs_38552 0 0 1 0 1 TAB1 chr22:39826020 3'AG 39826020 Downstream 76bp
chr14 73637541 73637541 1 + C T STAD 73637529 + 73637509 73637549 41 ACAATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTT ACAATAGAGAACGGCAGGAGCACAACGACAGATGGAGCCTT < 41bp 1 0.657201027757267 1 0.274886548519135 experiment 0.685597944485467 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637529 chr14:73637541 nonsynonymous SNV 0.044 3 33 hm5C_associated_SNPs_38553 0 0 1 0 1 PSEN1 chr14:73637505 3'AG 73637505 Downstream 37bp
chr14 73637541 73637541 1 + C T STAD 73637531 + 73637511 73637551 41 AATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGG AATAGAGAACGGCAGGAGCACAACGACAGATGGAGCCTTGG < 41bp 1 0.566314493419099 1 0.257904201745987 experiment 0.867371013161801 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637531 chr14:73637541 nonsynonymous SNV 0.044 3 31 hm5C_associated_SNPs_38554 0 0 1 0 1 PSEN1 chr14:73637505 3'AG 73637505 Downstream 37bp
chr10 103919311 103919311 1 + T C STAD 103919298 + 103919278 103919318 41 CCAGTGACGAGGAAGAGGAGCAAAAAAAACCCATGAAAAAT CCAGTGACGAGGAAGAGGAGCAAAAAAAACCCACGAAAAAT < 41bp 1 0.535443845433656 1 0.50555157661438 experiment 0.929112309132688 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919298 chr10:103919311 nonsynonymous SNV 0.719 0 34 hm5C_associated_SNPs_38555 0 0 1 0 1 NOLC1 chr10:103919325 5'GT 103919325 Upstream 15bp
chr7 138944044 138944044 1 + T C STAD 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TTGAGACGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG < 41bp 1 0.535496567583142 1 0.685847640037537 experiment 0.929006864833716 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944044 nonsynonymous SNV 0.994 0 7 hm5C_associated_SNPs_38556 0 0 1 0 2 UBN2 chr7:138944013 3'AG 138944013 Downstream 32bp
chr7 138944044 138944044 1 + T C STAD 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TTGAGACGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG < 41bp 1 0.535496567583142 1 0.685847640037537 experiment 0.929006864833716 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944044 nonsynonymous SNV 0.994 0 7 hm5C_associated_SNPs_38556 0 0 1 0 2 UBN2 chr7:138944116 5'GT 138944116 Upstream 73bp
chr1 36028856 36028856 1 + T A STAD 36028846 + 36028826 36028866 41 ACCTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAG ACCTGACCGTTGAAGATGGGCCCCGGGAGAACCTGATCAAG < 41bp 1 0.324882751050152 1 0.0462495386600494 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028846 chr1:36028856 nonsynonymous SNV 0.994 3 31 hm5C_associated_SNPs_38557 0 0 0 0 1 NCDN chr1:36028803 3'AG 36028803 Downstream 54bp
chr1 36028856 36028856 1 + T A STAD 36028847 + 36028827 36028867 41 CCTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAGG CCTGACCGTTGAAGATGGGCCCCGGGAGAACCTGATCAAGG < 41bp 1 0.370826367495635 1 0.205090224742889 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028847 chr1:36028856 nonsynonymous SNV 0.994 3 30 hm5C_associated_SNPs_38558 0 0 0 0 1 NCDN chr1:36028803 3'AG 36028803 Downstream 54bp
chr1 36028856 36028856 1 + T A STAD 36028848 + 36028828 36028868 41 CTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAGGA CTGACCGTTGAAGATGGGCCCCGGGAGAACCTGATCAAGGA < 41bp 1 0.453885726826693 1 0.387014865875244 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028848 chr1:36028856 nonsynonymous SNV 0.994 3 29 hm5C_associated_SNPs_38559 0 0 0 0 1 NCDN chr1:36028803 3'AG 36028803 Downstream 54bp
chr1 36028856 36028856 1 + T A STAD 36028874 + 36028854 36028894 41 GATCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAGT GAACCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAGT < 41bp 1 0.0498242416767472 1 0.0876727104187012 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028874 chr1:36028856 nonsynonymous SNV 0.994 3 3 hm5C_associated_SNPs_38560 0 0 0 0 1 NCDN chr1:36028803 3'AG 36028803 Downstream 54bp
chr1 36028856 36028856 1 + T A STAD 36028876 + 36028856 36028896 41 TCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAGTAT ACCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAGTAT < 41bp 1 0.0268096358491467 1 0.0668981373310089 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028876 chr1:36028856 nonsynonymous SNV 0.994 3 1 hm5C_associated_SNPs_38561 0 0 0 0 1 NCDN chr1:36028803 3'AG 36028803 Downstream 54bp
chr20 47641885 47641885 1 + G A STAD 47641892 + 47641872 47641912 41 TCCACATAGAGACGGAGGATCAGGGCATGTATAAGTACATG TCCACATAGAGACAGAGGATCAGGGCATGTATAAGTACATG < 41bp 1 0.512917559081821 1 0.80031430721283 experiment 0.974164881836357 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47641892 chr20:47641885 synonymous SNV . 0 14 hm5C_associated_SNPs_38562 0 0 1 0 1 ARFGEF2 chr20:47641850 3'AG 47641850 Downstream 36bp
chr22 38313789 38313789 1 + A G STAD 38313800 + 38313780 38313820 41 TGGAACCAGAAGATGTGGCTCAGGTAGGCAGATACCTGGAG TGGAACCAGGAGATGTGGCTCAGGTAGGCAGATACCTGGAG < 41bp 1 0.635114428192153 1 0.594373106956482 experiment 0.729771143615695 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38313800 chr22:38313789 nonsynonymous SNV 0.205 0 10 hm5C_associated_SNPs_38563 0 0 1 0 2 MICALL1 chr22:38313714 3'AG 38313714 Downstream 76bp
chr22 38313789 38313789 1 + A G STAD 38313800 + 38313780 38313820 41 TGGAACCAGAAGATGTGGCTCAGGTAGGCAGATACCTGGAG TGGAACCAGGAGATGTGGCTCAGGTAGGCAGATACCTGGAG < 41bp 1 0.635114428192153 1 0.594373106956482 experiment 0.729771143615695 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38313800 chr22:38313789 nonsynonymous SNV 0.205 0 10 hm5C_associated_SNPs_38563 0 0 1 0 2 MICALL1 chr22:38313802 5'GT 38313802 Upstream 14bp
chr5 139917038 139917038 1 + A G STAD 139917055 + 139917035 139917075 41 GATACCTCCCCCAATTGGAACAGAGAGACTGGCCCGAATTC GATGCCTCCCCCAATTGGAACAGAGAGACTGGCCCGAATTC < 41bp 1 0.318053177888235 1 0.587997436523438 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139917055 chr5:139917038 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_38564 0 0 1 0 1 ANKHD1;ANKHD1-EIF4EBP3 chr5:139916974 3'AG 139916974 Downstream 65bp
chr1 220279329 220279329 1 + C T STAD 220279315 + 220279295 220279335 41 TTACCTGCAAATCATGTGACCATGGCAAAAGGAACGGGATT TTACCTGCAAATCATGTGACCATGGCAAAAGGAATGGGATT < 41bp 1 0.196565976701289 1 0.316762089729309 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IARS2 ENSG00000067704 CDS Human protein_coding chr1:220279315 chr1:220279329 nonsynonymous SNV 0.999 3 35 hm5C_associated_SNPs_38565 0 0 1 0 2 IARS2 chr1:220279233 3'AG 220279233 Downstream 97bp
chr1 220279329 220279329 1 + C T STAD 220279315 + 220279295 220279335 41 TTACCTGCAAATCATGTGACCATGGCAAAAGGAACGGGATT TTACCTGCAAATCATGTGACCATGGCAAAAGGAATGGGATT < 41bp 1 0.196565976701289 1 0.316762089729309 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IARS2 ENSG00000067704 CDS Human protein_coding chr1:220279315 chr1:220279329 nonsynonymous SNV 0.999 3 35 hm5C_associated_SNPs_38565 0 0 1 0 2 IARS2 chr1:220279402 5'GT 220279402 Upstream 74bp
chr6 35438046 35438046 1 + T C STAD 35438048 + 35438028 35438068 41 TAAATAAGGCAGGAAAGTTCCCTTCCCTGCTCACACACAAC TAAATAAGGCAGGAAAGTCCCCTTCCCTGCTCACACACAAC < 41bp 1 0.0280311671015256 1 0.154522955417633 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL10A ENSG00000198755 CDS Human protein_coding chr6:35438048 chr6:35438046 nonsynonymous SNV 0.995 2 19 hm5C_associated_SNPs_38566 0 0 1 0 2 RPL10A chr6:35437956 3'AG 35437956 Downstream 91bp
chr6 35438046 35438046 1 + T C STAD 35438048 + 35438028 35438068 41 TAAATAAGGCAGGAAAGTTCCCTTCCCTGCTCACACACAAC TAAATAAGGCAGGAAAGTCCCCTTCCCTGCTCACACACAAC < 41bp 1 0.0280311671015256 1 0.154522955417633 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL10A ENSG00000198755 CDS Human protein_coding chr6:35438048 chr6:35438046 nonsynonymous SNV 0.995 2 19 hm5C_associated_SNPs_38566 0 0 1 0 2 RPL10A chr6:35438128 5'GT 35438128 Upstream 83bp
chr17 80544048 80544048 1 + G T STAD 80544032 + 80544012 80544052 41 GGCAGCCGTGCTGGCCCCTCCTAAGGCAGAGGCCCAGGAGA GGCAGCCGTGCTGGCCCCTCCTAAGGCAGAGGCCCATGAGA < 41bp 1 0.395443272111599 1 0.690102100372314 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80544032 chr17:80544048 nonsynonymous SNV 0.633 2 37 hm5C_associated_SNPs_38567 0 0 1 0 1 FOXK2 chr17:80544076 5'GT 80544076 Upstream 29bp
chr15 91432761 91432761 1 + T C STAD 91432750 + 91432730 91432770 41 GGCGCTGTCCCCCACAGGTCCGCACCTGACGTCCCACCCTG GGCGCTGTCCCCCACAGGTCCGCACCTGACGCCCCACCCTG < 41bp 1 0.341633994133386 1 0.0894729495048523 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FES ENSG00000182511 CDS Human protein_coding chr15:91432750 chr15:91432761 nonsynonymous SNV 0.867 0 32 hm5C_associated_SNPs_38569 0 0 0 0 1 FES chr15:91432747 3'AG 91432747 Downstream 15bp
chr16 601525 601525 1 + C T STAD 601540 + 601520 601560 41 GGCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGC GGCTCTGAAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGC < 41bp 1 0.0299451332706042 1 0.0626651346683502 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601540 chr16:601525 stopgain 0.990 1 6 hm5C_associated_SNPs_38570 0 0 1 0 1 CAPN15 chr16:601512 3'AG 601512 Downstream 14bp
chr11 117152365 117152365 1 + G A STAD 117152351 + 117152331 117152371 41 CATATCCAGTTAGTGAGGAACGGAGCCAAGCTGAGCAGCCT CATATCCAGTTAGTGAGGAACGGAGCCAAGCTGAACAGCCT < 41bp 1 0.522050198430597 1 0.486700862646103 experiment 0.955899603138805 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152351 chr11:117152365 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_38573 0 0 1 0 2 RNF214 chr11:117152316 3'AG 117152316 Downstream 50bp
chr11 117152365 117152365 1 + G A STAD 117152351 + 117152331 117152371 41 CATATCCAGTTAGTGAGGAACGGAGCCAAGCTGAGCAGCCT CATATCCAGTTAGTGAGGAACGGAGCCAAGCTGAACAGCCT < 41bp 1 0.522050198430597 1 0.486700862646103 experiment 0.955899603138805 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152351 chr11:117152365 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_38573 0 0 1 0 2 RNF214 chr11:117152414 5'GT 117152414 Upstream 50bp
chr18 21508172 21508172 1 + G T STAD 21508167 + 21508147 21508187 41 TGTCGTTAGATTGAATGATACTGTGGGAGTAACCAAAAAGT TGTCGTTAGATTGAATGATACTGTGTGAGTAACCAAAAAGT < 41bp 1 0.118509129020286 1 0.181551098823547 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21508167 chr18:21508172 stopgain 0.994 0 26 hm5C_associated_SNPs_38575 0 0 1 0 2 LAMA3 chr18:21508087 3'AG 21508087 Downstream 86bp
chr18 21508172 21508172 1 + G T STAD 21508167 + 21508147 21508187 41 TGTCGTTAGATTGAATGATACTGTGGGAGTAACCAAAAAGT TGTCGTTAGATTGAATGATACTGTGTGAGTAACCAAAAAGT < 41bp 1 0.118509129020286 1 0.181551098823547 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21508167 chr18:21508172 stopgain 0.994 0 26 hm5C_associated_SNPs_38575 0 0 1 0 2 LAMA3 chr18:21508204 5'GT 21508204 Upstream 33bp
chr18 21508172 21508172 1 + G T STAD 21508180 + 21508160 21508200 41 AATGATACTGTGGGAGTAACCAAAAAGTGCTCGGAAGACTG AATGATACTGTGTGAGTAACCAAAAAGTGCTCGGAAGACTG < 41bp 1 0.391878890252225 1 0.414385735988617 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21508180 chr18:21508172 stopgain 0.994 0 13 hm5C_associated_SNPs_38576 0 0 1 0 2 LAMA3 chr18:21508087 3'AG 21508087 Downstream 86bp
chr18 21508172 21508172 1 + G T STAD 21508180 + 21508160 21508200 41 AATGATACTGTGGGAGTAACCAAAAAGTGCTCGGAAGACTG AATGATACTGTGTGAGTAACCAAAAAGTGCTCGGAAGACTG < 41bp 1 0.391878890252225 1 0.414385735988617 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21508180 chr18:21508172 stopgain 0.994 0 13 hm5C_associated_SNPs_38576 0 0 1 0 2 LAMA3 chr18:21508204 5'GT 21508204 Upstream 33bp
chr19 18966037 18966037 1 + C T STAD 18966036 + 18966016 18966056 41 CACCATCGTCTACCACCTGGCCCGGCAAGGCAACGGGTAGG CACCATCGTCTACCACCTGGCTCGGCAAGGCAACGGGTAGG < 41bp 1 0.435199115329734 1 0.11017319560051 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18966036 chr19:18966037 synonymous SNV . 0 22 hm5C_associated_SNPs_38582 0 0 1 0 1 UPF1 chr19:18966051 5'GT 18966051 Upstream 15bp
chr19 18966037 18966037 1 + C T STAD 18966038 + 18966018 18966058 41 CCATCGTCTACCACCTGGCCCGGCAAGGCAACGGGTAGGGC CCATCGTCTACCACCTGGCTCGGCAAGGCAACGGGTAGGGC < 41bp 1 0.641684321735343 1 0.199085533618927 experiment 0.716631356529314 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18966038 chr19:18966037 synonymous SNV . 0 20 hm5C_associated_SNPs_38583 0 0 1 0 1 UPF1 chr19:18966051 5'GT 18966051 Upstream 15bp
chr12 94562997 94562997 1 + A T STAD 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATCCATTCCGACCTGACTTCCGTTTATGGCACCGTGGTAAT < 41bp 1 0.0615435883157767 1 0.0667796432971954 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94562997 synonymous SNV . 0 18 hm5C_associated_SNPs_38584 0 0 1 0 2 PLXNC1 chr12:94562929 3'AG 94562929 Downstream 69bp
chr12 94562997 94562997 1 + A T STAD 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATCCATTCCGACCTGACTTCCGTTTATGGCACCGTGGTAAT < 41bp 1 0.0615435883157767 1 0.0667796432971954 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94562997 synonymous SNV . 0 18 hm5C_associated_SNPs_38584 0 0 1 0 2 PLXNC1 chr12:94563069 5'GT 94563069 Upstream 73bp
chr17 36508871 36508871 1 + G T STAD 36508864 + 36508844 36508884 41 AGAGCTGGCTGCTTCAGCTGCGAGCCTGACAGACATGGGAG AGAGCTGGCTGCTTCAGCTGCGAGCCTTACAGACATGGGAG < 41bp 1 0.426169313664152 1 0.502792418003082 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SOCS7 ENSG00000174111 CDS Human other chr17:36508864 chr17:36508871 synonymous SNV . 0 28 hm5C_associated_SNPs_38587 0 0 1 0 1 SOCS7 chr17:36508915 5'GT 36508915 Upstream 45bp
chr17 36508871 36508871 1 + G T STAD 36508869 + 36508849 36508889 41 TGGCTGCTTCAGCTGCGAGCCTGACAGACATGGGAGGCTCT TGGCTGCTTCAGCTGCGAGCCTTACAGACATGGGAGGCTCT < 41bp 1 0.0366825376971863 1 0.0882514119148254 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SOCS7 ENSG00000174111 CDS Human other chr17:36508869 chr17:36508871 synonymous SNV . 0 23 hm5C_associated_SNPs_38588 0 0 1 0 1 SOCS7 chr17:36508915 5'GT 36508915 Upstream 45bp
chr19 36218419 36218419 1 + C T STAD 36218408 + 36218388 36218428 41 CTGCGGACCGTGTGCTGGGGCAGCGCAGCCCCGCTGGCGAG CTGCGGACCGTGTGCTGGGGCAGCGCAGCCCTGCTGGCGAG < 41bp 1 0.613332172532549 1 0.444473117589951 experiment 0.773335654934901 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36218408 chr19:36218419 nonsynonymous SNV 0.959 5 32 hm5C_associated_SNPs_38589 0 0 1 0 1 KMT2B chr19:36218339 3'AG 36218339 Downstream 81bp
chr3 119205779 119205779 1 + A C STAD 119205764 + 119205744 119205784 41 GAATACACCAAAAACCAGGCCTGGAAATCTATGAAAGTAAT GAATACACCAAAAACCAGGCCTGGAAATCTATGAACGTAAT < 41bp 1 0.676070175961301 1 0.137391656637192 experiment 0.647859648077399 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119205764 chr3:119205779 nonsynonymous SNV 0.999 2 36 hm5C_associated_SNPs_38591 0 0 1 0 2 POGLUT1 chr3:119205680 3'AG 119205680 Downstream 100bp
chr3 119205779 119205779 1 + A C STAD 119205764 + 119205744 119205784 41 GAATACACCAAAAACCAGGCCTGGAAATCTATGAAAGTAAT GAATACACCAAAAACCAGGCCTGGAAATCTATGAACGTAAT < 41bp 1 0.676070175961301 1 0.137391656637192 experiment 0.647859648077399 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119205764 chr3:119205779 nonsynonymous SNV 0.999 2 36 hm5C_associated_SNPs_38591 0 0 1 0 2 POGLUT1 chr3:119205779 5'GT 119205779 Upstream 1bp
chr3 184021842 184021842 1 + G A STAD 184021833 + 184021813 184021853 41 GACTATGTTCTCCACAACAGCAACACCATGAGACTTGGTTC GACTATGTTCTCCACAACAGCAACACCATAAGACTTGGTTC < 41bp 1 0.581256487040605 1 0.426441550254822 experiment 0.837487025918791 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184021833 chr3:184021842 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_38592 0 0 1 0 1 PSMD2 chr3:184021862 5'GT 184021862 Upstream 21bp
chr6 150290471 150290471 1 + C T STAD 150290478 + 150290458 150290498 41 AATTTTTGATGTACTGGGAACAAATGCTGGATCCAACAAGT AATTTTTGATGTATTGGGAACAAATGCTGGATCCAACAAGT < 41bp 1 0.238777898167912 1 0.450637489557266 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ULBP1 ENSG00000111981 CDS Human protein_coding chr6:150290478 chr6:150290471 synonymous SNV . 0 14 hm5C_associated_SNPs_38597 0 0 1 0 1 ULBP1 chr6:150290496 5'GT 150290496 Upstream 26bp
chr11 65827423 65827423 1 + G A STAD 65827410 + 65827390 65827430 41 CAAACGGGGCATTGAGAAGCCCCCCTTCGAGCTGCCAGACT CAAACGGGGCATTGAGAAGCCCCCCTTCGAGCTACCAGACT < 41bp 1 0.152654948836797 1 0.0397890210151672 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827410 chr11:65827423 synonymous SNV . 0 34 hm5C_associated_SNPs_38602 0 0 1 0 1 SF3B2 chr11:65827480 5'GT 65827480 Upstream 58bp
chr11 65396109 65396109 1 + T G STAD 65396110 + 65396090 65396130 41 CGTTTCGTGCTGACCTACATCGCGCCCTGGCAGATCACCTG CGTTTCGTGCTGACCTACAGCGCGCCCTGGCAGATCACCTG < 41bp 1 0.381152146496103 1 0.509104311466217 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65396110 chr11:65396109 nonsynonymous SNV 0.987 4 20 hm5C_associated_SNPs_38604 0 0 0 0 2 PCNX3 chr11:65396066 3'AG 65396066 Downstream 44bp
chr11 65396109 65396109 1 + T G STAD 65396110 + 65396090 65396130 41 CGTTTCGTGCTGACCTACATCGCGCCCTGGCAGATCACCTG CGTTTCGTGCTGACCTACAGCGCGCCCTGGCAGATCACCTG < 41bp 1 0.381152146496103 1 0.509104311466217 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65396110 chr11:65396109 nonsynonymous SNV 0.987 4 20 hm5C_associated_SNPs_38604 0 0 0 0 2 PCNX3 chr11:65396174 5'GT 65396174 Upstream 66bp
chr2 11312071 11312071 1 + C T STAD 11312065 + 11312045 11312085 41 AAACAGAATCTATGTACTTTCATCAGCGCGGCCAGTAAGTT AAACAGAATCTATGTACTTTCATCAGTGCGGCCAGTAAGTT < 41bp 1 0.63397255849934 1 0.139862895011902 experiment 0.73205488300132 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11312065 chr2:11312071 synonymous SNV . 0 27 hm5C_associated_SNPs_38606 0 0 0 0 1 PQLC3 chr2:11312051 3'AG 11312051 Downstream 21bp
chr7 66563551 66563551 1 + C T STAD 66563534 + 66563514 66563554 41 ACTGTATTCTCCAGGAGTACCGGGCGTCAAAGCAGAACGCT ACTGTATTCTCCAGGAGTACCGGGCGTCAAAGCAGAATGCT < 41bp 1 0.676584422926346 1 0.867416381835938 experiment 0.646831154147307 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66563534 chr7:66563551 nonsynonymous SNV 0.131 2 38 hm5C_associated_SNPs_38609 0 0 0 0 1 TYW1 chr7:66563528 3'AG 66563528 Downstream 24bp
chr12 52631305 52631305 1 + A G STAD 52631311 + 52631291 52631331 41 AGGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAA AGGTACGAAGATGAGATTAACCACCGCACAGCTGCTGAGAA < 41bp 1 0.0913740430345224 1 0.0405388474464417 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631311 chr12:52631305 synonymous SNV . 0 15 hm5C_associated_SNPs_38612 0 0 0 0 2 KRT7 chr12:52631293 3'AG 52631293 Downstream 13bp
chr12 52631305 52631305 1 + A G STAD 52631311 + 52631291 52631331 41 AGGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAA AGGTACGAAGATGAGATTAACCACCGCACAGCTGCTGAGAA < 41bp 1 0.0913740430345224 1 0.0405388474464417 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631311 chr12:52631305 synonymous SNV . 0 15 hm5C_associated_SNPs_38612 0 0 0 0 2 KRT7 chr12:52631353 5'GT 52631353 Upstream 49bp
chr12 52631305 52631305 1 + A G STAD 52631312 + 52631292 52631332 41 GGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAAT GGTACGAAGATGAGATTAACCACCGCACAGCTGCTGAGAAT < 41bp 1 0.690578866804071 1 0.322987496852875 experiment 0.618842266391857 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631312 chr12:52631305 synonymous SNV . 0 14 hm5C_associated_SNPs_38613 0 0 0 0 2 KRT7 chr12:52631293 3'AG 52631293 Downstream 13bp
chr12 52631305 52631305 1 + A G STAD 52631312 + 52631292 52631332 41 GGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAAT GGTACGAAGATGAGATTAACCACCGCACAGCTGCTGAGAAT < 41bp 1 0.690578866804071 1 0.322987496852875 experiment 0.618842266391857 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631312 chr12:52631305 synonymous SNV . 0 14 hm5C_associated_SNPs_38613 0 0 0 0 2 KRT7 chr12:52631353 5'GT 52631353 Upstream 49bp
chr12 52631305 52631305 1 + A G STAD 52631314 + 52631294 52631334 41 TACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGA TACGAAGATGAGATTAACCACCGCACAGCTGCTGAGAATGA < 41bp 1 0.276651470094523 1 0.099734753370285 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631314 chr12:52631305 synonymous SNV . 0 12 hm5C_associated_SNPs_38614 0 0 0 0 2 KRT7 chr12:52631293 3'AG 52631293 Downstream 13bp
chr12 52631305 52631305 1 + A G STAD 52631314 + 52631294 52631334 41 TACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGA TACGAAGATGAGATTAACCACCGCACAGCTGCTGAGAATGA < 41bp 1 0.276651470094523 1 0.099734753370285 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631314 chr12:52631305 synonymous SNV . 0 12 hm5C_associated_SNPs_38614 0 0 0 0 2 KRT7 chr12:52631353 5'GT 52631353 Upstream 49bp
chr12 52631305 52631305 1 + A G STAD 52631315 + 52631295 52631335 41 ACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGAG ACGAAGATGAGATTAACCACCGCACAGCTGCTGAGAATGAG < 41bp 1 0.155240333942527 1 0.154914230108261 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631315 chr12:52631305 synonymous SNV . 0 11 hm5C_associated_SNPs_38615 0 0 0 0 2 KRT7 chr12:52631293 3'AG 52631293 Downstream 13bp
chr12 52631305 52631305 1 + A G STAD 52631315 + 52631295 52631335 41 ACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGAG ACGAAGATGAGATTAACCACCGCACAGCTGCTGAGAATGAG < 41bp 1 0.155240333942527 1 0.154914230108261 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631315 chr12:52631305 synonymous SNV . 0 11 hm5C_associated_SNPs_38615 0 0 0 0 2 KRT7 chr12:52631353 5'GT 52631353 Upstream 49bp
chr7 92926147 92926147 1 + A T STAD 92926143 + 92926123 92926163 41 ATCTTTGTTTTGGATATAATCAGCAGGTAGTATTTAAGATC ATCTTTGTTTTGGATATAATCAGCTGGTAGTATTTAAGATC < 41bp 1 0.471865110628775 1 0.792846322059631 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS50 ENSG00000004766 CDS Human protein_coding chr7:92926143 chr7:92926147 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_38616 0 0 1 2 2 VPS50 chr7:92926054 3'AG 92926054 Downstream 94bp
chr7 92926147 92926147 1 + A T STAD 92926143 + 92926123 92926163 41 ATCTTTGTTTTGGATATAATCAGCAGGTAGTATTTAAGATC ATCTTTGTTTTGGATATAATCAGCTGGTAGTATTTAAGATC < 41bp 1 0.471865110628775 1 0.792846322059631 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS50 ENSG00000004766 CDS Human protein_coding chr7:92926143 chr7:92926147 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_38616 0 0 1 2 2 VPS50 chr7:92926148 5'GT 92926148 Upstream 2bp
chr3 132244996 132244996 1 + A G STAD 132245004 + 132244984 132245024 41 GCTGTGTGTTCGAGCCATGGCATCTTTAGAGACCATTGGCC GCTGTGTGTTCGGGCCATGGCATCTTTAGAGACCATTGGCC < 41bp 1 0.200708449632996 1 0.126541256904602 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DNAJC13 ENSG00000138246 CDS Human protein_coding chr3:132245004 chr3:132244996 synonymous SNV . 0 13 hm5C_associated_SNPs_38617 0 0 1 0 1 DNAJC13 chr3:132244985 3'AG 132244985 Downstream 12bp
chr1 65147712 65147712 1 + C T STAD 65147716 + 65147696 65147736 41 ACTCGGTTTATAGCTGCGGTCATCGAACGACATGCACACAG ACTCGGTTTATAGCTGTGGTCATCGAACGACATGCACACAG < 41bp 1 0.470299621975157 1 0.393672674894333 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65147716 chr1:65147712 nonsynonymous SNV 0.973 4 17 hm5C_associated_SNPs_38618 0 0 0 0 2 CACHD1 chr1:65147688 3'AG 65147688 Downstream 25bp
chr1 65147712 65147712 1 + C T STAD 65147716 + 65147696 65147736 41 ACTCGGTTTATAGCTGCGGTCATCGAACGACATGCACACAG ACTCGGTTTATAGCTGTGGTCATCGAACGACATGCACACAG < 41bp 1 0.470299621975157 1 0.393672674894333 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65147716 chr1:65147712 nonsynonymous SNV 0.973 4 17 hm5C_associated_SNPs_38618 0 0 0 0 2 CACHD1 chr1:65147789 5'GT 65147789 Upstream 78bp
chr11 1009100 1009100 1 + G A STAD 1009111 + 1009091 1009131 41 TGCTGGCAGGTATGGGGGCACCTTCCAGAACGTGTCTGTGC TGCTGGCAGATATGGGGGCACCTTCCAGAACGTGTCTGTGC < 41bp 1 0.0108049015303122 1 0.0408118069171906 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:1009111 chr11:1009100 synonymous SNV . 0 10 hm5C_associated_SNPs_38619 0 0 1 0 1 AP2A2 chr11:1009100 3'AG 1009100 Downstream 1bp
chr11 57373905 57373905 1 + C T STAD 57373925 + 57373905 57373945 41 CCAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA TCAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA < 41bp 1 0.0213102996492289 1 0.0590977072715759 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373925 chr11:57373905 nonsynonymous SNV 0.003 1 1 hm5C_associated_SNPs_38620 0 0 0 0 1 SERPING1 chr11:57373881 3'AG 57373881 Downstream 25bp
chr19 579629 579629 1 + C T STAD 579636 + 579616 579656 41 CTGAAGGAGGACGCGCTGCCCGGCCAGAAAACGGAGTTCAA CTGAAGGAGGACGTGCTGCCCGGCCAGAAAACGGAGTTCAA < 41bp 1 0.506107036691581 1 0.738250553607941 experiment 0.987785926616837 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579636 chr19:579629 nonsynonymous SNV 0.000 0 14 hm5C_associated_SNPs_38624 0 0 1 0 1 BSG chr19:579656 5'GT 579656 Upstream 28bp
chr19 579629 579629 1 + C T STAD 579640 + 579620 579660 41 AGGAGGACGCGCTGCCCGGCCAGAAAACGGAGTTCAAGTGA AGGAGGACGTGCTGCCCGGCCAGAAAACGGAGTTCAAGTGA < 41bp 1 0.788856235596479 1 0.539587557315826 experiment 0.422287528807042 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579640 chr19:579629 nonsynonymous SNV 0.000 0 10 hm5C_associated_SNPs_38625 0 0 1 0 1 BSG chr19:579656 5'GT 579656 Upstream 28bp
chr16 87730240 87730240 1 + A G STAD 87730243 + 87730223 87730263 41 TCAACATCGGAGTCGCCATTCTGTTTATTAACTTTTTCATC TCAACATCGGAGTCGCCGTTCTGTTTATTAACTTTTTCATC < 41bp 1 0.095375591696727 1 0.165996879339218 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control JPH3 ENSG00000154118 CDS Human protein_coding chr16:87730243 chr16:87730240 nonsynonymous SNV 0.999 3 18 hm5C_associated_SNPs_38627 0 0 1 0 1 JPH3 chr16:87730186 3'AG 87730186 Downstream 55bp
chr15 22940764 22940764 1 + C A STAD 22940756 + 22940736 22940776 41 GCACATCCTCCGGCAGCAGCCCTCAGTACAACATCTGCGAG GCACATCCTCCGGCAGCAGCCCTCAGTAAAACATCTGCGAG < 41bp 1 0.377077205155769 1 0.314810454845428 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22940756 chr15:22940764 stopgain . 0 29 hm5C_associated_SNPs_38628 0 0 1 0 2 CYFIP1 chr15:22940728 3'AG 22940728 Downstream 37bp
chr15 22940764 22940764 1 + C A STAD 22940756 + 22940736 22940776 41 GCACATCCTCCGGCAGCAGCCCTCAGTACAACATCTGCGAG GCACATCCTCCGGCAGCAGCCCTCAGTAAAACATCTGCGAG < 41bp 1 0.377077205155769 1 0.314810454845428 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22940756 chr15:22940764 stopgain . 0 29 hm5C_associated_SNPs_38628 0 0 1 0 2 CYFIP1 chr15:22940845 5'GT 22940845 Upstream 82bp
chr19 41758857 41758857 1 + C G STAD 41758850 + 41758830 41758870 41 ACACAGCTTCCTCCTCTATTCCCGGCTCGGGGACCAGCCAG ACACAGCTTCCTCCTCTATTCCCGGCTGGGGGACCAGCCAG < 41bp 1 0.634136732306204 1 0.387991338968277 experiment 0.731726535387592 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AXL ENSG00000167601 CDS Human protein_coding chr19:41758850 chr19:41758857 synonymous SNV . 0 28 hm5C_associated_SNPs_38629 0 0 0 0 1 AXL chr19:41758872 5'GT 41758872 Upstream 16bp
chr19 41758857 41758857 1 + C G STAD 41758851 + 41758831 41758871 41 CACAGCTTCCTCCTCTATTCCCGGCTCGGGGACCAGCCAGT CACAGCTTCCTCCTCTATTCCCGGCTGGGGGACCAGCCAGT < 41bp 1 0.216688956283286 1 0.171185731887817 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 CDS Human protein_coding chr19:41758851 chr19:41758857 synonymous SNV . 0 27 hm5C_associated_SNPs_38630 0 0 0 0 1 AXL chr19:41758872 5'GT 41758872 Upstream 16bp
chr5 10415649 10415649 1 + C A STAD 10415639 + 10415619 10415659 41 AATGTCGTTTTGGACGGGGACTGCCAAAATCCATGAGCTCT AATGTCGTTTTGGACGGGGACTGCCAAAATACATGAGCTCT < 41bp 1 0.229502781037194 1 0.331987142562866 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10415639 chr5:10415649 synonymous SNV . 0 31 hm5C_associated_SNPs_38631 0 0 1 0 1 MARCH6 chr5:10415600 3'AG 10415600 Downstream 50bp
chr19 5144277 5144277 1 + G A STAD 5144297 + 5144277 5144317 41 GTGTCCCTAGGCCAGGTGGTCATCACCAAGAACCGCAACGG ATGTCCCTAGGCCAGGTGGTCATCACCAAGAACCGCAACGG < 41bp 1 0.348690519797947 1 0.133119821548462 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM4B ENSG00000127663 CDS Human protein_coding chr19:5144297 chr19:5144277 nonsynonymous SNV 0.901 2 1 hm5C_associated_SNPs_38632 0 0 1 0 1 KDM4B chr19:5144259 3'AG 5144259 Downstream 19bp
chr17 1636825 1636825 1 + C T STAD 1636828 + 1636808 1636848 41 CACTCCTATCCAGGTGACATCATCCGGAAAATCATCCCCAA CACTCCTATCCAGGTGATATCATCCGGAAAATCATCCCCAA < 41bp 1 0.169769612615576 1 0.523113906383514 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1636828 chr17:1636825 synonymous SNV . 0 18 hm5C_associated_SNPs_38633 0 0 0 0 1 WDR81 chr17:1636821 3'AG 1636821 Downstream 5bp
chr16 50813911 50813911 1 + G A STAD 50813901 + 50813881 50813921 41 CCTCCTTTCTATGGGGTAATCCGTTGGATCGGTCAGCCACC CCTCCTTTCTATGGGGTAATCCGTTGGATCAGTCAGCCACC < 41bp 1 0.346872364642034 1 0.311738133430481 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CYLD ENSG00000083799 CDS Human protein_coding chr16:50813901 chr16:50813911 nonsynonymous SNV 0.994 5 31 hm5C_associated_SNPs_38635 0 0 0 0 1 CYLD chr16:50813955 5'GT 50813955 Upstream 45bp
chr17 30687715 30687715 1 + C T STAD 30687710 + 30687690 30687730 41 TCAGCCACAGCCTGTTCAACCTCAGCAAGGTTATATTCCTC TCAGCCACAGCCTGTTCAACCTCAGTAAGGTTATATTCCTC < 41bp 1 0.760929968988213 1 0.0650482177734375 experiment 0.478140062023573 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30687710 chr17:30687715 stopgain 0.996 1 26 hm5C_associated_SNPs_38636 0 0 1 0 1 ZNF207 chr17:30687784 5'GT 30687784 Upstream 70bp
chr10 71243576 71243576 1 + G A STAD 71243594 + 71243574 71243614 41 TGGTCTCCTTCATTGGTGTGCTGGCGTCCCTCCGTGACAAC TGATCTCCTTCATTGGTGTGCTGGCGTCCCTCCGTGACAAC < 41bp 1 0.497614677579345 1 0.186168670654297 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243594 chr10:71243576 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_38637 0 0 1 0 1 TSPAN15 chr10:71243632 5'GT 71243632 Upstream 57bp
chr20 2843946 2843946 1 + C T STAD 2843957 + 2843937 2843977 41 CTCGTGTTGCGGAGACTTTACCCCCTGGCCATCCAGATATG CTCGTGTTGTGGAGACTTTACCCCCTGGCCATCCAGATATG < 41bp 1 0.26803805895955 1 0.0622218549251556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2843957 chr20:2843946 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_38638 0 0 0 1 1 VPS16 chr20:2843936 3'AG 2843936 Downstream 11bp
chr20 62904614 62904614 1 + C T STAD 62904609 + 62904589 62904629 41 GCAGCCTCCAGGACTTGGCTCGCATCGCCATCCGGGGCACC GCAGCCTCCAGGACTTGGCTCGCATTGCCATCCGGGGCACC < 41bp 1 0.448460591166355 1 0.0189490616321564 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCMTD2 ENSG00000203880 CDS Human protein_coding chr20:62904609 chr20:62904614 synonymous SNV . 0 26 hm5C_associated_SNPs_38639 0 0 1 0 1 PCMTD2 chr20:62904574 3'AG 62904574 Downstream 41bp
chr9 93624564 93624564 1 + G A STAD 93624554 + 93624534 93624574 41 CACGAAGGGAAGGTGCTGCACTATCGCATCGACAAAGACAA CACGAAGGGAAGGTGCTGCACTATCGCATCAACAAAGACAA < 41bp 1 0.203340919154624 1 0.0489352345466614 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYK ENSG00000165025 CDS Human protein_coding chr9:93624554 chr9:93624564 nonsynonymous SNV 0.349 2 31 hm5C_associated_SNPs_38641 0 0 0 2 2 SYK chr9:93624488 3'AG 93624488 Downstream 77bp
chr9 93624564 93624564 1 + G A STAD 93624554 + 93624534 93624574 41 CACGAAGGGAAGGTGCTGCACTATCGCATCGACAAAGACAA CACGAAGGGAAGGTGCTGCACTATCGCATCAACAAAGACAA < 41bp 1 0.203340919154624 1 0.0489352345466614 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYK ENSG00000165025 CDS Human protein_coding chr9:93624554 chr9:93624564 nonsynonymous SNV 0.349 2 31 hm5C_associated_SNPs_38641 0 0 0 2 2 SYK chr9:93624626 5'GT 93624626 Upstream 63bp
chr22 45580379 45580379 1 + C T STAD 45580373 + 45580353 45580393 41 TCTGATTCCACCCAATATGCCATGTACGCGAACAGGGAAGA TCTGATTCCACCCAATATGCCATGTATGCGAACAGGGAAGA < 41bp 1 0.214577259495943 1 0.0911376774311066 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NUP50 ENSG00000093000 CDS Human protein_coding chr22:45580373 chr22:45580379 nonsynonymous SNV 0.992 1 27 hm5C_associated_SNPs_38642 0 0 1 1 1 NUP50 chr22:45580334 3'AG 45580334 Downstream 46bp
chr19 46519581 46519581 1 + C T STAD 46519595 + 46519575 46519615 41 GGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTTTGTGAA GGTGGTTGCGCGCTCCGCTTCGACCCCACGGCCTTTGTGAA < 41bp 1 0.234411205124265 1 0.34785470366478 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46519595 chr19:46519581 nonsynonymous SNV 0.087 3 7 hm5C_associated_SNPs_38643 0 0 0 0 2 CCDC61 chr19:46519576 3'AG 46519576 Downstream 6bp
chr19 46519581 46519581 1 + C T STAD 46519595 + 46519575 46519615 41 GGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTTTGTGAA GGTGGTTGCGCGCTCCGCTTCGACCCCACGGCCTTTGTGAA < 41bp 1 0.234411205124265 1 0.34785470366478 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46519595 chr19:46519581 nonsynonymous SNV 0.087 3 7 hm5C_associated_SNPs_38643 0 0 0 0 2 CCDC61 chr19:46519651 5'GT 46519651 Upstream 71bp
chr5 6746349 6746349 1 + G A STAD 6746347 + 6746327 6746367 41 TTGCATCCAAGAATTGATGCCCGGAGAGCTGATGAAAACCT TTGCATCCAAGAATTGATGCCCAGAGAGCTGATGAAAACCT < 41bp 1 0.290942253721533 1 0.213539361953735 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6746347 chr5:6746349 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_38645 0 0 1 0 1 PAPD7 chr5:6746327 3'AG 6746327 Downstream 23bp
chr19 55897997 55897997 1 + G C STAD 55898006 + 55897986 55898026 41 ATTCACCGCAAGACTGTGGGCGTGGAGCCGGCAGCCGACGG ATTCACCGCAACACTGTGGGCGTGGAGCCGGCAGCCGACGG < 41bp 1 0.647729125027336 1 0.49397748708725 experiment 0.704541749945327 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55898006 chr19:55897997 nonsynonymous SNV 0.975 4 12 hm5C_associated_SNPs_38646 0 0 1 0 2 RPL28 chr19:55897938 3'AG 55897938 Downstream 60bp
chr19 55897997 55897997 1 + G C STAD 55898006 + 55897986 55898026 41 ATTCACCGCAAGACTGTGGGCGTGGAGCCGGCAGCCGACGG ATTCACCGCAACACTGTGGGCGTGGAGCCGGCAGCCGACGG < 41bp 1 0.647729125027336 1 0.49397748708725 experiment 0.704541749945327 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55898006 chr19:55897997 nonsynonymous SNV 0.975 4 12 hm5C_associated_SNPs_38646 0 0 1 0 2 RPL28 chr19:55898061 5'GT 55898061 Upstream 65bp
chr19 55897997 55897997 1 + G C STAD 55898017 + 55897997 55898037 41 GACTGTGGGCGTGGAGCCGGCAGCCGACGGCAAAGGTGTCG CACTGTGGGCGTGGAGCCGGCAGCCGACGGCAAAGGTGTCG < 41bp 1 0.469760528516318 1 0.385560989379883 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55898017 chr19:55897997 nonsynonymous SNV 0.975 4 1 hm5C_associated_SNPs_38647 0 0 1 0 2 RPL28 chr19:55897938 3'AG 55897938 Downstream 60bp
chr19 55897997 55897997 1 + G C STAD 55898017 + 55897997 55898037 41 GACTGTGGGCGTGGAGCCGGCAGCCGACGGCAAAGGTGTCG CACTGTGGGCGTGGAGCCGGCAGCCGACGGCAAAGGTGTCG < 41bp 1 0.469760528516318 1 0.385560989379883 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55898017 chr19:55897997 nonsynonymous SNV 0.975 4 1 hm5C_associated_SNPs_38647 0 0 1 0 2 RPL28 chr19:55898061 5'GT 55898061 Upstream 65bp
chr4 79437046 79437046 1 + C T STAD 79437053 + 79437033 79437073 41 AGCGTGCGAGAGCCGAAGACCATCCAGCTCTACAAACACCT AGCGTGCGAGAGCTGAAGACCATCCAGCTCTACAAACACCT < 41bp 1 0.0539214948105482 1 0.0865097045898438 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79437053 chr4:79437046 nonsynonymous SNV 0.660 0 14 hm5C_associated_SNPs_38648 0 0 1 0 1 FRAS1 chr4:79436953 3'AG 79436953 Downstream 94bp
chr17 57771152 57771152 1 + G C STAD 57771132 + 57771112 57771152 41 GCAGGACCCAGTGTTGCCGTCCCTCCCCAGGCACCTTTTGG GCAGGACCCAGTGTTGCCGTCCCTCCCCAGGCACCTTTTGC < 41bp 1 0.0340789709471277 1 0.114349365234375 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57771132 chr17:57771152 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_38650 0 0 1 0 1 CLTC chr17:57771089 3'AG 57771089 Downstream 64bp
chr20 62311267 62311267 1 + C T STAD 62311284 + 62311264 62311304 41 ACTCGCTGGACCAGATCATCCAGCACCTGGCAGGACGTGAG ACTTGCTGGACCAGATCATCCAGCACCTGGCAGGACGTGAG < 41bp 1 0.73753097543998 1 0.697623431682587 experiment 0.52493804912004 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62311284 chr20:62311267 nonsynonymous SNV 0.958 1 4 hm5C_associated_SNPs_38651 0 0 1 0 2 RTEL1 chr20:62311202 3'AG 62311202 Downstream 66bp
chr20 62311267 62311267 1 + C T STAD 62311284 + 62311264 62311304 41 ACTCGCTGGACCAGATCATCCAGCACCTGGCAGGACGTGAG ACTTGCTGGACCAGATCATCCAGCACCTGGCAGGACGTGAG < 41bp 1 0.73753097543998 1 0.697623431682587 experiment 0.52493804912004 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62311284 chr20:62311267 nonsynonymous SNV 0.958 1 4 hm5C_associated_SNPs_38651 0 0 1 0 2 RTEL1 chr20:62311299 5'GT 62311299 Upstream 33bp
chr10 115661633 115661633 1 + G A STAD 115661650 + 115661630 115661670 41 CTCGTAGGAGGAGAAAGAGACCCCATGGTAATGACAGTCAC CTCATAGGAGGAGAAAGAGACCCCATGGTAATGACAGTCAC < 41bp 1 0.754574644802549 1 0.227912753820419 experiment 0.490850710394902 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115661650 chr10:115661633 nonsynonymous SNV 0.825 1 4 hm5C_associated_SNPs_38652 0 0 1 0 1 NHLRC2 chr10:115661656 5'GT 115661656 Upstream 24bp
chr10 115661633 115661633 1 + G A STAD 115661651 + 115661631 115661671 41 TCGTAGGAGGAGAAAGAGACCCCATGGTAATGACAGTCACT TCATAGGAGGAGAAAGAGACCCCATGGTAATGACAGTCACT < 41bp 1 0.247637247929065 1 0.20770388841629 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115661651 chr10:115661633 nonsynonymous SNV 0.825 1 3 hm5C_associated_SNPs_38653 0 0 1 0 1 NHLRC2 chr10:115661656 5'GT 115661656 Upstream 24bp
chr1 21771652 21771652 1 + G A STAD 21771644 + 21771624 21771664 41 AGGCCCTGATGTAGAAACTTCCCCATTCGGTGCACCAAGAG AGGCCCTGATGTAGAAACTTCCCCATTCAGTGCACCAAGAG < 41bp 1 0.441743876857967 1 0.208679109811783 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBPF3 ENSG00000142794 CDS Human protein_coding chr1:21771644 chr1:21771652 nonsynonymous SNV 0.000 1 29 hm5C_associated_SNPs_38655 0 0 1 0 1 NBPF3 chr1:21771712 5'GT 21771712 Upstream 61bp
chr15 63073397 63073397 1 + T C STAD 63073407 + 63073387 63073427 41 CAGACGACTGTGGTTAAATACTCCAAAGCCATTGCGGTGAC CAGACGACTGCGGTTAAATACTCCAAAGCCATTGCGGTGAC < 41bp 1 0.646584502570349 1 0.980767130851746 experiment 0.706830994859301 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63073407 chr15:63073397 nonsynonymous SNV 1.000 0 11 hm5C_associated_SNPs_38657 0 0 0 0 2 TLN2 chr15:63073339 3'AG 63073339 Downstream 59bp
chr15 63073397 63073397 1 + T C STAD 63073407 + 63073387 63073427 41 CAGACGACTGTGGTTAAATACTCCAAAGCCATTGCGGTGAC CAGACGACTGCGGTTAAATACTCCAAAGCCATTGCGGTGAC < 41bp 1 0.646584502570349 1 0.980767130851746 experiment 0.706830994859301 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63073407 chr15:63073397 nonsynonymous SNV 1.000 0 11 hm5C_associated_SNPs_38657 0 0 0 0 2 TLN2 chr15:63073440 5'GT 63073440 Upstream 44bp
chr3 41275088 41275088 1 + C A STAD 41275104 + 41275084 41275124 41 TCACCTGTGCAGCTGGAATTCTTTCTAACCTCACTTGCAAT TCACATGTGCAGCTGGAATTCTTTCTAACCTCACTTGCAAT < 41bp 1 0.115538518778384 1 0.303830355405807 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41275104 chr3:41275088 synonymous SNV . 0 5 hm5C_associated_SNPs_38659 0 0 1 0 1 CTNNB1 chr3:41275020 3'AG 41275020 Downstream 69bp
chr19 39219765 39219765 1 + G A STAD 39219773 + 39219753 39219793 41 GACCAGGTCATCGCTTCCTTCAAGGTCTTAGCAGGGGACAA GACCAGGTCATCACTTCCTTCAAGGTCTTAGCAGGGGACAA < 41bp 1 0.596496193522576 1 0.879628300666809 experiment 0.807007612954848 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39219773 chr19:39219765 nonsynonymous SNV 0.999 0 13 hm5C_associated_SNPs_38660 0 0 1 0 1 ACTN4 chr19:39219794 5'GT 39219794 Upstream 30bp
chr9 103002432 103002432 1 + G A STAD 103002451 + 103002431 103002471 41 CGTGGTTGATGTCTTGACCTCATATGAAAGCTGCAATATAA CATGGTTGATGTCTTGACCTCATATGAAAGCTGCAATATAA < 41bp 1 0.130550120468734 1 0.306302428245544 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control INVS ENSG00000119509 CDS Human protein_coding chr9:103002451 chr9:103002432 nonsynonymous SNV 0.952 4 2 hm5C_associated_SNPs_38662 0 0 1 0 2 INVS chr9:103002342 3'AG 103002342 Downstream 91bp
chr9 103002432 103002432 1 + G A STAD 103002451 + 103002431 103002471 41 CGTGGTTGATGTCTTGACCTCATATGAAAGCTGCAATATAA CATGGTTGATGTCTTGACCTCATATGAAAGCTGCAATATAA < 41bp 1 0.130550120468734 1 0.306302428245544 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control INVS ENSG00000119509 CDS Human protein_coding chr9:103002451 chr9:103002432 nonsynonymous SNV 0.952 4 2 hm5C_associated_SNPs_38662 0 0 1 0 2 INVS chr9:103002522 5'GT 103002522 Upstream 91bp
chr1 879297 879297 1 + C T STAD 879299 + 879279 879319 41 TCTCTGCAGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGT TCTCTGCAGGTGGCCAGGTGCCTGGGCCGAGTTTTCTACGT < 41bp 1 0.534648587657421 1 0.490102797746658 experiment 0.930702824685158 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879299 chr1:879297 nonsynonymous SNV 0.992 4 19 hm5C_associated_SNPs_38664 0 0 0 0 2 SAMD11 chr1:879273 3'AG 879273 Downstream 25bp
chr1 879297 879297 1 + C T STAD 879299 + 879279 879319 41 TCTCTGCAGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGT TCTCTGCAGGTGGCCAGGTGCCTGGGCCGAGTTTTCTACGT < 41bp 1 0.534648587657421 1 0.490102797746658 experiment 0.930702824685158 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879299 chr1:879297 nonsynonymous SNV 0.992 4 19 hm5C_associated_SNPs_38664 0 0 0 0 2 SAMD11 chr1:879288 3'AG 879288 Downstream 10bp
chr1 879297 879297 1 + C T STAD 879305 + 879285 879325 41 CAGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGGCCAG CAGGTGGCCAGGTGCCTGGGCCGAGTTTTCTACGTGGCCAG < 41bp 1 0.534460837238221 1 0.124000430107117 experiment 0.931078325523558 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879305 chr1:879297 nonsynonymous SNV 0.992 4 13 hm5C_associated_SNPs_38665 0 0 0 0 2 SAMD11 chr1:879273 3'AG 879273 Downstream 25bp
chr1 879297 879297 1 + C T STAD 879305 + 879285 879325 41 CAGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGGCCAG CAGGTGGCCAGGTGCCTGGGCCGAGTTTTCTACGTGGCCAG < 41bp 1 0.534460837238221 1 0.124000430107117 experiment 0.931078325523558 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879305 chr1:879297 nonsynonymous SNV 0.992 4 13 hm5C_associated_SNPs_38665 0 0 0 0 2 SAMD11 chr1:879288 3'AG 879288 Downstream 10bp
chr1 879297 879297 1 + C T STAD 879306 + 879286 879326 41 AGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGGCCAGC AGGTGGCCAGGTGCCTGGGCCGAGTTTTCTACGTGGCCAGC < 41bp 1 0.672253872324648 1 0.141072064638138 experiment 0.655492255350703 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879306 chr1:879297 nonsynonymous SNV 0.992 4 12 hm5C_associated_SNPs_38666 0 0 0 0 2 SAMD11 chr1:879273 3'AG 879273 Downstream 25bp
chr1 879297 879297 1 + C T STAD 879306 + 879286 879326 41 AGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGGCCAGC AGGTGGCCAGGTGCCTGGGCCGAGTTTTCTACGTGGCCAGC < 41bp 1 0.672253872324648 1 0.141072064638138 experiment 0.655492255350703 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879306 chr1:879297 nonsynonymous SNV 0.992 4 12 hm5C_associated_SNPs_38666 0 0 0 0 2 SAMD11 chr1:879288 3'AG 879288 Downstream 10bp
chr3 61975362 61975362 1 + C A STAD 61975349 + 61975329 61975369 41 CTAGTGTCAGCTGTGGGGGCCGTCACCAGTCTCCTATTGAC CTAGTGTCAGCTGTGGGGGCCGTCACCAGTCTCATATTGAC < 41bp 1 0.145642532034084 1 0.132719278335571 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:61975349 chr3:61975362 nonsynonymous SNV 0.997 5 34 hm5C_associated_SNPs_38667 0 0 1 0 1 PTPRG chr3:61975299 3'AG 61975299 Downstream 64bp
chr1 19653763 19653763 1 + G A STAD 19653775 + 19653755 19653795 41 CTCTGTTCGCGCTGGTGATGCTGGGGAACACGCTGTATGGG CTCTGTTCACGCTGGTGATGCTGGGGAACACGCTGTATGGG < 41bp 1 0.795908966207177 1 0.838004767894745 experiment 0.408182067585646 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PQLC2 ENSG00000040487 CDS Human protein_coding chr1:19653775 chr1:19653763 nonsynonymous SNV 0.642 2 9 hm5C_associated_SNPs_38671 0 0 1 0 1 PQLC2 chr1:19653721 3'AG 19653721 Downstream 43bp
chr20 62366609 62366609 1 + C T STAD 62366599 + 62366579 62366619 41 CTGGACCAGTGTGTGGAGACCCTGCAGAAGCAGACCAGGGT CTGGACCAGTGTGTGGAGACCCTGCAGAAGTAGACCAGGGT < 41bp 1 0.0584728383149286 1 0.417743444442749 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZGPAT ENSG00000197114;ENSG00000273154 CDS Human other chr20:62366599 chr20:62366609 stopgain 0.154 0 31 hm5C_associated_SNPs_38672 0 0 1 0 2 ZGPAT chr20:62366511 3'AG 62366511 Downstream 99bp
chr20 62366609 62366609 1 + C T STAD 62366599 + 62366579 62366619 41 CTGGACCAGTGTGTGGAGACCCTGCAGAAGCAGACCAGGGT CTGGACCAGTGTGTGGAGACCCTGCAGAAGTAGACCAGGGT < 41bp 1 0.0584728383149286 1 0.417743444442749 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZGPAT ENSG00000197114;ENSG00000273154 CDS Human other chr20:62366599 chr20:62366609 stopgain 0.154 0 31 hm5C_associated_SNPs_38672 0 0 1 0 2 ZGPAT chr20:62366588 3'AG 62366588 Downstream 22bp
chr4 178262744 178262744 1 + A T STAD 178262731 + 178262711 178262751 41 ACTGTGTGCCGCTTTGGGGACAATAACAGAATGACATATTT ACTGTGTGCCGCTTTGGGGACAATAACAGAATGTCATATTT < 41bp 1 0.429117986027535 1 0.149990439414978 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178262731 chr4:178262744 nonsynonymous SNV 0.997 3 34 hm5C_associated_SNPs_38673 0 0 1 0 1 NEIL3 chr4:178262796 5'GT 178262796 Upstream 53bp
chr4 178262744 178262744 1 + A T STAD 178262745 + 178262725 178262765 41 TGGGGACAATAACAGAATGACATATTTCTGTCCTCACTGTC TGGGGACAATAACAGAATGTCATATTTCTGTCCTCACTGTC < 41bp 1 0.170446920955981 1 0.0341855883598328 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178262745 chr4:178262744 nonsynonymous SNV 0.997 3 20 hm5C_associated_SNPs_38674 0 0 1 0 1 NEIL3 chr4:178262796 5'GT 178262796 Upstream 53bp
chr12 7019089 7019089 1 + G A STAD 7019093 + 7019073 7019113 41 AGGTGGAAGGCTTGGAGGATCTGAGCAATCTCACCACCTTG AGGTGGAAGGCTTGGAAGATCTGAGCAATCTCACCACCTTG < 41bp 1 0.707411467396326 1 0.0786848068237305 experiment 0.585177065207348 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRRC23 ENSG00000010626 CDS Human protein_coding chr12:7019093 chr12:7019089 synonymous SNV . 0 17 hm5C_associated_SNPs_38675 0 0 0 0 1 LRRC23 chr12:7019054 3'AG 7019054 Downstream 36bp
chr12 124074934 124074934 1 + C T STAD 124074928 + 124074908 124074948 41 AGAAATGATCAATGAGCTAGCAGTGGCGATGACAGCTGTAA AGAAATGATCAATGAGCTAGCAGTGGTGATGACAGCTGTAA < 41bp 1 0.702682298024918 1 0.26972234249115 experiment 0.594635403950165 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED2 ENSG00000086598 CDS Human protein_coding chr12:124074928 chr12:124074934 nonsynonymous SNV 0.995 1 27 hm5C_associated_SNPs_38677 0 0 1 0 2 TMED2 chr12:124074889 3'AG 124074889 Downstream 46bp
chr12 124074934 124074934 1 + C T STAD 124074928 + 124074908 124074948 41 AGAAATGATCAATGAGCTAGCAGTGGCGATGACAGCTGTAA AGAAATGATCAATGAGCTAGCAGTGGTGATGACAGCTGTAA < 41bp 1 0.702682298024918 1 0.26972234249115 experiment 0.594635403950165 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED2 ENSG00000086598 CDS Human protein_coding chr12:124074928 chr12:124074934 nonsynonymous SNV 0.995 1 27 hm5C_associated_SNPs_38677 0 0 1 0 2 TMED2 chr12:124074996 5'GT 124074996 Upstream 63bp
chr17 42426659 42426659 1 + C T STAD 42426663 + 42426643 42426683 41 CAGCTACAGCTGCTGCCGTCCCCTTCTGGTGAGTGCCCCTC CAGCTACAGCTGCTGCTGTCCCCTTCTGGTGAGTGCCCCTC < 41bp 1 0.120455048957343 1 0.0392272770404816 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRN ENSG00000030582 CDS Human protein_coding chr17:42426663 chr17:42426659 nonsynonymous SNV 0.304 1 17 hm5C_associated_SNPs_38679 0 0 1 0 1 GRN chr17:42426670 5'GT 42426670 Upstream 12bp
chr17 42426659 42426659 1 + C T STAD 42426664 + 42426644 42426684 41 AGCTACAGCTGCTGCCGTCCCCTTCTGGTGAGTGCCCCTCA AGCTACAGCTGCTGCTGTCCCCTTCTGGTGAGTGCCCCTCA < 41bp 1 0.0822050596000531 1 0.261016637086868 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRN ENSG00000030582 CDS Human protein_coding chr17:42426664 chr17:42426659 nonsynonymous SNV 0.304 1 16 hm5C_associated_SNPs_38680 0 0 1 0 1 GRN chr17:42426670 5'GT 42426670 Upstream 12bp
chr17 42426659 42426659 1 + C T STAD 42426668 + 42426648 42426688 41 ACAGCTGCTGCCGTCCCCTTCTGGTGAGTGCCCCTCAGCCT ACAGCTGCTGCTGTCCCCTTCTGGTGAGTGCCCCTCAGCCT < 41bp 1 0.786288577248155 1 0.56370598077774 experiment 0.427422845503689 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRN ENSG00000030582 CDS Human protein_coding chr17:42426668 chr17:42426659 nonsynonymous SNV 0.304 1 12 hm5C_associated_SNPs_38681 0 0 1 0 1 GRN chr17:42426670 5'GT 42426670 Upstream 12bp
chr4 183609430 183609430 1 + G T STAD 183609440 + 183609420 183609460 41 CACCCCCGCTGTGCCGAGCACGGGACCTGCAAGGATGGCAA CACCCCCGCTTTGCCGAGCACGGGACCTGCAAGGATGGCAA < 41bp 1 0.744822161750177 1 0.823609828948975 experiment 0.510355676499645 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TENM3 ENSG00000218336 CDS Human protein_coding chr4:183609440 chr4:183609430 nonsynonymous SNV 0.752 3 11 hm5C_associated_SNPs_38682 0 0 0 0 1 TENM3 chr4:183609504 5'GT 183609504 Upstream 75bp
chr19 45797677 45797677 1 + G A STAD 45797692 + 45797672 45797712 41 TGAGCGCCCGTCACTGTTGCCAAATGGGAAAGAAAACAGGT TGAGCACCCGTCACTGTTGCCAAATGGGAAAGAAAACAGGT < 41bp 1 0.231286551909823 1 0.843668103218079 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45797692 chr19:45797677 nonsynonymous SNV 0.983 2 6 hm5C_associated_SNPs_38684 0 0 1 0 2 MARK4 chr19:45797607 3'AG 45797607 Downstream 71bp
chr19 45797677 45797677 1 + G A STAD 45797692 + 45797672 45797712 41 TGAGCGCCCGTCACTGTTGCCAAATGGGAAAGAAAACAGGT TGAGCACCCGTCACTGTTGCCAAATGGGAAAGAAAACAGGT < 41bp 1 0.231286551909823 1 0.843668103218079 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45797692 chr19:45797677 nonsynonymous SNV 0.983 2 6 hm5C_associated_SNPs_38684 0 0 1 0 2 MARK4 chr19:45797710 5'GT 45797710 Upstream 34bp
chr15 22969309 22969309 1 + G T STAD 22969313 + 22969293 22969333 41 CCCTGCACGTCTTCTGGGAGCTCAACTATGACTTCCTGCCC CCCTGCACGTCTTCTGTGAGCTCAACTATGACTTCCTGCCC < 41bp 1 0.715973289604287 1 0.212426543235779 experiment 0.568053420791425 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22969313 chr15:22969309 nonsynonymous SNV . 0 17 hm5C_associated_SNPs_38685 0 0 1 0 1 CYFIP1 chr15:22969362 5'GT 22969362 Upstream 54bp
chr22 38021856 38021856 1 + C T STAD 38021859 + 38021839 38021879 41 GATCTCCCGCCTGCGGGCACCACCTACCCAGCTATGCCCAC GATCTCCCGCCTGCGGGTACCACCTACCCAGCTATGCCCAC < 41bp 1 0.418795907860588 1 0.166118651628494 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38021859 chr22:38021856 synonymous SNV . 0 18 hm5C_associated_SNPs_38688 0 0 1 0 1 GGA1 chr22:38021804 3'AG 38021804 Downstream 53bp
chr3 136002741 136002741 1 + T C STAD 136002747 + 136002727 136002767 41 GGCCCATGTGCTGGTGGGGCCGTCTACTCCCCAGCCCTAAC GGCCCATGTGCTGGCGGGGCCGTCTACTCCCCAGCCCTAAC < 41bp 1 0.198817856699065 1 0.351216793060303 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCCB ENSG00000114054 CDS Human protein_coding chr3:136002747 chr3:136002741 synonymous SNV . 0 15 hm5C_associated_SNPs_38689 0 0 1 0 2 PCCB chr3:136002679 3'AG 136002679 Downstream 63bp
chr3 136002741 136002741 1 + T C STAD 136002747 + 136002727 136002767 41 GGCCCATGTGCTGGTGGGGCCGTCTACTCCCCAGCCCTAAC GGCCCATGTGCTGGCGGGGCCGTCTACTCCCCAGCCCTAAC < 41bp 1 0.198817856699065 1 0.351216793060303 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCCB ENSG00000114054 CDS Human protein_coding chr3:136002747 chr3:136002741 synonymous SNV . 0 15 hm5C_associated_SNPs_38689 0 0 1 0 2 PCCB chr3:136002789 5'GT 136002789 Upstream 49bp
chr6 138727163 138727163 1 + T C STAD 138727165 + 138727145 138727185 41 CGTGGAGCCTGGTTCAGGTCCTTTTAGTGAGTCTACCATTA CGTGGAGCCTGGTTCAGGCCCTTTTAGTGAGTCTACCATTA < 41bp 1 0.0945935166966293 1 0.030289500951767 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HEBP2 ENSG00000051620 CDS Human protein_coding chr6:138727165 chr6:138727163 synonymous SNV . 0 19 hm5C_associated_SNPs_38690 0 0 1 0 1 HEBP2 chr6:138727108 3'AG 138727108 Downstream 56bp
chr17 37359334 37359334 1 + C T STAD 37359316 + 37359296 37359336 41 GGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGT GGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACTGT < 41bp 1 0.329819202213971 1 0.196842670440674 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359316 chr17:37359334 nonsynonymous SNV 0.308 1 39 hm5C_associated_SNPs_38691 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 93bp
chr17 37359334 37359334 1 + C T STAD 37359316 + 37359296 37359336 41 GGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGT GGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACTGT < 41bp 1 0.329819202213971 1 0.196842670440674 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359316 chr17:37359334 nonsynonymous SNV 0.308 1 39 hm5C_associated_SNPs_38691 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 29bp
chr17 37359334 37359334 1 + C T STAD 37359319 + 37359299 37359339 41 GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAA GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACTGTGAA < 41bp 1 0.333812985266208 1 0.0761534571647644 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359319 chr17:37359334 nonsynonymous SNV 0.308 1 36 hm5C_associated_SNPs_38692 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 93bp
chr17 37359334 37359334 1 + C T STAD 37359319 + 37359299 37359339 41 GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAA GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACTGTGAA < 41bp 1 0.333812985266208 1 0.0761534571647644 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359319 chr17:37359334 nonsynonymous SNV 0.308 1 36 hm5C_associated_SNPs_38692 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 29bp
chr17 37359334 37359334 1 + C T STAD 37359322 + 37359302 37359342 41 TGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCT TGAGGATTTTGCGCCGGCTGCTCAGAAGATACTGTGAATCT < 41bp 1 0.495163420186631 1 0.111561059951782 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359322 chr17:37359334 nonsynonymous SNV 0.308 1 33 hm5C_associated_SNPs_38693 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 93bp
chr17 37359334 37359334 1 + C T STAD 37359322 + 37359302 37359342 41 TGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCT TGAGGATTTTGCGCCGGCTGCTCAGAAGATACTGTGAATCT < 41bp 1 0.495163420186631 1 0.111561059951782 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359322 chr17:37359334 nonsynonymous SNV 0.308 1 33 hm5C_associated_SNPs_38693 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 29bp
chr17 37359334 37359334 1 + C T STAD 37359333 + 37359313 37359353 41 CGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGA CGCCGGCTGCTCAGAAGATACTGTGAATCTAAGAAGATCGA < 41bp 1 0.455185337595794 1 0.178947478532791 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359333 chr17:37359334 nonsynonymous SNV 0.308 1 22 hm5C_associated_SNPs_38694 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 93bp
chr17 37359334 37359334 1 + C T STAD 37359333 + 37359313 37359353 41 CGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGA CGCCGGCTGCTCAGAAGATACTGTGAATCTAAGAAGATCGA < 41bp 1 0.455185337595794 1 0.178947478532791 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359333 chr17:37359334 nonsynonymous SNV 0.308 1 22 hm5C_associated_SNPs_38694 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 29bp
chr16 67572574 67572574 1 + G A STAD 67572572 + 67572552 67572592 41 TCTGAGGACAGCCTCTCCTTCAGGAGTTTCCCGGTCTTCAG TCTGAGGACAGCCTCTCCTTCAAGAGTTTCCCGGTCTTCAG < 41bp 1 0.788803371581395 1 0.576224088668823 experiment 0.422393256837211 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1;RIPOR1 ENSG00000039523;ENSG00000039523 exonic;splicing Human protein_coding chr16:67572572 chr16:67572574 nonsynonymous SNV 0.085 1 23 hm5C_associated_SNPs_38696 0 0 0 0 1 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 12bp
chr20 35862431 35862431 1 + G C STAD 35862428 + 35862408 35862448 41 CTCCCCATCATTCAGTGGATCCGGATTGGTGCCAATGTCTC CTCCCCATCATTCAGTGGATCCGCATTGGTGCCAATGTCTC < 41bp 1 0.319747809075747 1 0.184706062078476 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35862428 chr20:35862431 synonymous SNV . 0 24 hm5C_associated_SNPs_38699 0 0 1 0 2 RPN2 chr20:35862423 3'AG 35862423 Downstream 9bp
chr20 35862431 35862431 1 + G C STAD 35862428 + 35862408 35862448 41 CTCCCCATCATTCAGTGGATCCGGATTGGTGCCAATGTCTC CTCCCCATCATTCAGTGGATCCGCATTGGTGCCAATGTCTC < 41bp 1 0.319747809075747 1 0.184706062078476 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35862428 chr20:35862431 synonymous SNV . 0 24 hm5C_associated_SNPs_38699 0 0 1 0 2 RPN2 chr20:35862498 5'GT 35862498 Upstream 68bp
chr16 29821423 29821423 1 + G A STAD 29821428 + 29821408 29821448 41 GGTTTGTCCAATGGCGGCGGCAGCGGCAGCGGCGGCAGCGG GGTTTGTCCAATGGCAGCGGCAGCGGCAGCGGCGGCAGCGG < 41bp 1 0.772792284593474 1 0.413539558649063 experiment 0.454415430813052 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAZ ENSG00000103495 CDS Human protein_coding chr16:29821428 chr16:29821423 synonymous SNV . 0 16 hm5C_associated_SNPs_38700 0 0 1 0 1 MAZ chr16:29821398 3'AG 29821398 Downstream 26bp
chr17 27027988 27027988 1 + G A STAD 27027991 + 27027971 27028011 41 CCAGCCCAGCAGCCAGTGGCCACACCACTAATGACCCCTAG CCAGCCCAGCAGCCAGTAGCCACACCACTAATGACCCCTAG < 41bp 1 0.323780128620954 1 0.350154936313629 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27027991 chr17:27027988 synonymous SNV . 0 18 hm5C_associated_SNPs_38701 0 0 1 0 1 SUPT6H chr17:27027959 3'AG 27027959 Downstream 30bp
chr3 49060165 49060165 1 + A T STAD 49060174 + 49060154 49060194 41 TCACCGAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC TCACCGAAGACTGCTTTTCCCTCTTCTGGTTGCTGGAGCCC < 41bp 1 0.3695692356408 1 0.119828552007675 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060174 chr3:49060165 nonsynonymous SNV 0.993 4 12 hm5C_associated_SNPs_38702 0 0 1 0 2 NDUFAF3 chr3:49060135 3'AG 49060135 Downstream 31bp
chr3 49060165 49060165 1 + A T STAD 49060174 + 49060154 49060194 41 TCACCGAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC TCACCGAAGACTGCTTTTCCCTCTTCTGGTTGCTGGAGCCC < 41bp 1 0.3695692356408 1 0.119828552007675 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060174 chr3:49060165 nonsynonymous SNV 0.993 4 12 hm5C_associated_SNPs_38702 0 0 1 0 2 NDUFAF3 chr3:49060201 5'GT 49060201 Upstream 37bp
chr1 162725000 162725000 1 + C T STAD 162725020 + 162725000 162725040 41 CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA TCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA < 41bp 1 0.46968991438904 1 0.797774851322174 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162725020 chr1:162725000 nonsynonymous SNV 0.895 4 1 hm5C_associated_SNPs_38703 0 0 0 0 2 DDR2 chr1:162724946 3'AG 162724946 Downstream 55bp
chr1 162725000 162725000 1 + C T STAD 162725020 + 162725000 162725040 41 CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA TCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA < 41bp 1 0.46968991438904 1 0.797774851322174 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162725020 chr1:162725000 nonsynonymous SNV 0.895 4 1 hm5C_associated_SNPs_38703 0 0 0 0 2 DDR2 chr1:162725093 5'GT 162725093 Upstream 94bp
chr3 49060162 49060162 1 + G C STAD 49060174 + 49060154 49060194 41 TCACCGAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC TCACCGAACACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC < 41bp 1 0.31645556219798 1 0.138821959495544 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060174 chr3:49060162 nonsynonymous SNV 0.988 2 9 hm5C_associated_SNPs_38704 0 0 1 0 2 NDUFAF3 chr3:49060135 3'AG 49060135 Downstream 28bp
chr3 49060162 49060162 1 + G C STAD 49060174 + 49060154 49060194 41 TCACCGAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC TCACCGAACACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC < 41bp 1 0.31645556219798 1 0.138821959495544 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060174 chr3:49060162 nonsynonymous SNV 0.988 2 9 hm5C_associated_SNPs_38704 0 0 1 0 2 NDUFAF3 chr3:49060201 5'GT 49060201 Upstream 40bp
chr11 46747450 46747450 1 + G T STAD 46747436 + 46747416 46747456 41 TCAAGTCACTGTAGCGATGACTCCACGCTCCGAAGGCTCCA TCAAGTCACTGTAGCGATGACTCCACGCTCCGAATGCTCCA < 41bp 1 0.715151483712339 1 0.959439873695374 experiment 0.569697032575322 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control F2 ENSG00000180210 CDS Human protein_coding chr11:46747436 chr11:46747450 nonsynonymous SNV 0.013 3 35 hm5C_associated_SNPs_38705 0 0 1 0 1 F2 chr11:46747409 3'AG 46747409 Downstream 42bp
chr5 156816266 156816266 1 + G A STAD 156816259 + 156816239 156816279 41 CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTGAC CGGCTGTGCTGTGGCCTGTCCATGTTCAAGGTCATCCTGAC < 41bp 1 0.277203437735171 1 0.689785838127136 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816259 chr5:156816266 nonsynonymous SNV 0.998 1 28 hm5C_associated_SNPs_38707 0 0 1 0 1 CYFIP2 chr5:156816197 3'AG 156816197 Downstream 70bp
chr14 64628976 64628976 1 + A C STAD 64628971 + 64628951 64628991 41 ACAACCTGGCAGAGATCCTGCCCCCAGCCCTGCAGGACATA ACAACCTGGCAGAGATCCTGCCCCCCGCCCTGCAGGACATA < 41bp 1 0.0690209296265039 1 0.0405756831169128 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64628971 chr14:64628976 synonymous SNV . 0 26 hm5C_associated_SNPs_38711 0 0 1 0 1 SYNE2 chr14:64628994 5'GT 64628994 Upstream 19bp
chr4 3418745 3418745 1 + C T STAD 3418764 + 3418744 3418784 41 GCAGCAGGTCCCCAGCAGCCCGGCTTCCAAGCACAGCCTCG GTAGCAGGTCCCCAGCAGCCCGGCTTCCAAGCACAGCCTCG < 41bp 1 0.562003924763632 1 0.453533291816711 experiment 0.875992150472736 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RGS12 ENSG00000159788 CDS Human protein_coding chr4:3418764 chr4:3418745 stopgain 0.592 1 2 hm5C_associated_SNPs_38714 0 0 0 0 1 RGS12 chr4:3418819 5'GT 3418819 Upstream 75bp
chr3 126725006 126725006 1 + G A STAD 126725001 + 126724981 126725021 41 TCTGTGGACTTCGTCTTCTACAACTGCAGCGTCCACCAGTC TCTGTGGACTTCGTCTTCTACAACTACAGCGTCCACCAGTC < 41bp 1 0.21153828636093 1 0.136605530977249 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126725001 chr3:126725006 nonsynonymous SNV 1.000 5 26 hm5C_associated_SNPs_38715 0 0 1 0 2 PLXNA1 chr3:126724922 3'AG 126724922 Downstream 85bp
chr3 126725006 126725006 1 + G A STAD 126725001 + 126724981 126725021 41 TCTGTGGACTTCGTCTTCTACAACTGCAGCGTCCACCAGTC TCTGTGGACTTCGTCTTCTACAACTACAGCGTCCACCAGTC < 41bp 1 0.21153828636093 1 0.136605530977249 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126725001 chr3:126725006 nonsynonymous SNV 1.000 5 26 hm5C_associated_SNPs_38715 0 0 1 0 2 PLXNA1 chr3:126725021 5'GT 126725021 Upstream 16bp
chr2 74154140 74154140 1 + G A STAD 74154149 + 74154129 74154169 41 GCCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAA GCCTGCACGCGAGGCGCGGGCCCCGAAGGCTCTCCATCGAA < 41bp 1 0.612427116297426 1 0.243247717618942 experiment 0.775145767405149 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154149 chr2:74154140 nonsynonymous SNV 0.076 1 12 hm5C_associated_SNPs_38717 0 0 1 0 1 DGUOK chr2:74154179 5'GT 74154179 Upstream 40bp
chr2 74154140 74154140 1 + G A STAD 74154151 + 74154131 74154171 41 CTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAAGG CTGCACGCGAGGCGCGGGCCCCGAAGGCTCTCCATCGAAGG < 41bp 1 0.70668981851345 1 0.33574390411377 experiment 0.586620362973101 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154151 chr2:74154140 nonsynonymous SNV 0.076 1 10 hm5C_associated_SNPs_38718 0 0 1 0 1 DGUOK chr2:74154179 5'GT 74154179 Upstream 40bp
chr2 74154140 74154140 1 + G A STAD 74154152 + 74154132 74154172 41 TGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAAGGC TGCACGCGAGGCGCGGGCCCCGAAGGCTCTCCATCGAAGGC < 41bp 1 0.721702752945232 1 0.504762530326843 experiment 0.556594494109537 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154152 chr2:74154140 nonsynonymous SNV 0.076 1 9 hm5C_associated_SNPs_38719 0 0 1 0 1 DGUOK chr2:74154179 5'GT 74154179 Upstream 40bp
chr12 52636839 52636839 1 + T C STAD 52636840 + 52636820 52636860 41 GGGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGAT GGGAAGCATGGGGACGACCCCCGGAATACCCGGAATGAGAT < 41bp 1 0.5619248287244 1 0.69479513168335 experiment 0.8761503425512 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636840 chr12:52636839 nonsynonymous SNV 0.256 2 20 hm5C_associated_SNPs_38720 0 0 0 0 2 KRT7 chr12:52636796 3'AG 52636796 Downstream 44bp
chr12 52636839 52636839 1 + T C STAD 52636840 + 52636820 52636860 41 GGGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGAT GGGAAGCATGGGGACGACCCCCGGAATACCCGGAATGAGAT < 41bp 1 0.5619248287244 1 0.69479513168335 experiment 0.8761503425512 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636840 chr12:52636839 nonsynonymous SNV 0.256 2 20 hm5C_associated_SNPs_38720 0 0 0 0 2 KRT7 chr12:52636921 5'GT 52636921 Upstream 83bp
chr12 52636839 52636839 1 + T C STAD 52636841 + 52636821 52636861 41 GGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGATT GGAAGCATGGGGACGACCCCCGGAATACCCGGAATGAGATT < 41bp 1 0.649865002761624 1 0.858032941818237 experiment 0.700269994476753 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636841 chr12:52636839 nonsynonymous SNV 0.256 2 19 hm5C_associated_SNPs_38721 0 0 0 0 2 KRT7 chr12:52636796 3'AG 52636796 Downstream 44bp
chr12 52636839 52636839 1 + T C STAD 52636841 + 52636821 52636861 41 GGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGATT GGAAGCATGGGGACGACCCCCGGAATACCCGGAATGAGATT < 41bp 1 0.649865002761624 1 0.858032941818237 experiment 0.700269994476753 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636841 chr12:52636839 nonsynonymous SNV 0.256 2 19 hm5C_associated_SNPs_38721 0 0 0 0 2 KRT7 chr12:52636921 5'GT 52636921 Upstream 83bp
chr5 172315753 172315753 1 + C T STAD 172315759 + 172315739 172315779 41 CAGCCAACGTACACCGGGGCCATTAGTGAGTAGCCAACCTC CAGCCAACGTACACTGGGGCCATTAGTGAGTAGCCAACCTC < 41bp 1 0.162684806011678 1 0.0571464598178864 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ERGIC1 ENSG00000113719 CDS Human protein_coding chr5:172315759 chr5:172315753 synonymous SNV . 0 15 hm5C_associated_SNPs_38722 0 0 1 0 2 ERGIC1 chr5:172315702 3'AG 172315702 Downstream 52bp
chr5 172315753 172315753 1 + C T STAD 172315759 + 172315739 172315779 41 CAGCCAACGTACACCGGGGCCATTAGTGAGTAGCCAACCTC CAGCCAACGTACACTGGGGCCATTAGTGAGTAGCCAACCTC < 41bp 1 0.162684806011678 1 0.0571464598178864 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ERGIC1 ENSG00000113719 CDS Human protein_coding chr5:172315759 chr5:172315753 synonymous SNV . 0 15 hm5C_associated_SNPs_38722 0 0 1 0 2 ERGIC1 chr5:172315763 5'GT 172315763 Upstream 11bp
chr15 69652454 69652454 1 + T C STAD 69652440 + 69652420 69652460 41 ATGCTGAGCCTGAAGCTCCCCAGGCTGTTTAGCATAGACCA ATGCTGAGCCTGAAGCTCCCCAGGCTGTTTAGCACAGACCA < 41bp 1 0.666179189191116 1 0.816994249820709 experiment 0.667641621617768 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69652440 chr15:69652454 nonsynonymous SNV 0.198 2 35 hm5C_associated_SNPs_38724 0 0 0 0 1 PAQR5 chr15:69652470 5'GT 69652470 Upstream 17bp
chr17 27011920 27011920 1 + C T STAD 27011913 + 27011893 27011933 41 GGTGAAGGAGAAGTGACAGACTTCCTTCGACTGCCCCATTT GGTGAAGGAGAAGTGACAGACTTCCTTTGACTGCCCCATTT < 41bp 1 0.369657961655149 1 0.121444791555405 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27011913 chr17:27011920 stopgain 0.958 1 28 hm5C_associated_SNPs_38725 0 0 1 0 1 SUPT6H chr17:27011862 3'AG 27011862 Downstream 59bp
chr17 27011920 27011920 1 + C T STAD 27011928 + 27011908 27011948 41 ACAGACTTCCTTCGACTGCCCCATTTTACCAAACGGCGAAC ACAGACTTCCTTTGACTGCCCCATTTTACCAAACGGCGAAC < 41bp 1 0.0758811253044482 1 0.076342910528183 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27011928 chr17:27011920 stopgain 0.958 1 13 hm5C_associated_SNPs_38726 0 0 1 0 1 SUPT6H chr17:27011862 3'AG 27011862 Downstream 59bp
chr3 50614571 50614571 1 + G A STAD 50614569 + 50614549 50614589 41 CCCCTCATTCTGGAGGTGGGCTGCGGATCAGGAGCCATCTC CCCCTCATTCTGGAGGTGGGCTACGGATCAGGAGCCATCTC < 41bp 1 0.59196780381498 1 0.0826593041419983 experiment 0.816064392370039 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614569 chr3:50614571 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_38727 0 0 0 0 2 HEMK1 chr3:50614483 3'AG 50614483 Downstream 89bp
chr3 50614571 50614571 1 + G A STAD 50614569 + 50614549 50614589 41 CCCCTCATTCTGGAGGTGGGCTGCGGATCAGGAGCCATCTC CCCCTCATTCTGGAGGTGGGCTACGGATCAGGAGCCATCTC < 41bp 1 0.59196780381498 1 0.0826593041419983 experiment 0.816064392370039 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614569 chr3:50614571 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_38727 0 0 0 0 2 HEMK1 chr3:50614617 5'GT 50614617 Upstream 47bp
chr7 99701287 99701287 1 + G A STAD 99701304 + 99701284 99701324 41 GCCGCCCCGTCCTGTCCAGTCGCTCTGACCAGGTGAGGGAA GCCACCCCGTCCTGTCCAGTCGCTCTGACCAGGTGAGGGAA < 41bp 1 0.446804242137339 1 0.371312946081161 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99701304 chr7:99701287 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_38729 0 0 1 0 2 AP4M1 chr7:99701235 3'AG 99701235 Downstream 53bp
chr7 99701287 99701287 1 + G A STAD 99701304 + 99701284 99701324 41 GCCGCCCCGTCCTGTCCAGTCGCTCTGACCAGGTGAGGGAA GCCACCCCGTCCTGTCCAGTCGCTCTGACCAGGTGAGGGAA < 41bp 1 0.446804242137339 1 0.371312946081161 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99701304 chr7:99701287 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_38729 0 0 1 0 2 AP4M1 chr7:99701315 5'GT 99701315 Upstream 29bp
chr15 40509698 40509698 1 + A G STAD 40509700 + 40509680 40509720 41 CTTAAATCTGGGCTCAGAATCCACGATCCCTATGATTGTAA CTTAAATCTGGGCTCAGAGTCCACGATCCCTATGATTGTAA < 41bp 1 0.125128170371081 1 0.1215760409832 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BUB1B ENSG00000156970 CDS Human protein_coding chr15:40509700 chr15:40509698 nonsynonymous SNV 0.999 3 19 hm5C_associated_SNPs_38730 0 0 1 0 1 BUB1B chr15:40509697 3'AG 40509697 Downstream 2bp
chr17 4701662 4701662 1 + T A STAD 4701676 + 4701656 4701696 41 GGCAAGTACTTTTGGGAGACCAGATACCCAAATTCGCCGTT GGCAAGAACTTTTGGGAGACCAGATACCCAAATTCGCCGTT < 41bp 1 0.784330784635086 1 0.521468341350555 experiment 0.431338430729828 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMB6 ENSG00000142507 CDS Human protein_coding chr17:4701676 chr17:4701662 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_38731 0 0 1 0 1 PSMB6 chr17:4701575 3'AG 4701575 Downstream 88bp
chr16 12662459 12662459 1 + C T STAD 12662443 + 12662423 12662463 41 CAAACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAACGTGG CAAACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAATGTGG < 41bp 1 0.312056712565027 1 0.561266660690308 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662443 chr16:12662459 synonymous SNV . 0 37 hm5C_associated_SNPs_38733 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 97bp
chr16 12662459 12662459 1 + C T STAD 12662444 + 12662424 12662464 41 AAACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAACGTGGA AAACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAATGTGGA < 41bp 1 0.179653703439244 1 0.855356216430664 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662444 chr16:12662459 synonymous SNV . 0 36 hm5C_associated_SNPs_38734 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 97bp
chr16 12662459 12662459 1 + C T STAD 12662445 + 12662425 12662465 41 AACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAACGTGGAG AACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAATGTGGAG < 41bp 1 0.672010849232394 1 0.835638880729675 experiment 0.655978301535213 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662445 chr16:12662459 synonymous SNV . 0 35 hm5C_associated_SNPs_38735 0 0 0 0 1 SNX29 chr16:12662363 3'AG 12662363 Downstream 97bp
chr12 111884628 111884628 1 + G A STAD 111884617 + 111884597 111884637 41 AGGAGGTCCGGTGGTGCACACGGCTTGAGATGCCTGACAAC AGGAGGTCCGGTGGTGCACACGGCTTGAGATACCTGACAAC < 41bp 1 0.585382615306177 1 0.592601597309113 experiment 0.829234769387647 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH2B3 ENSG00000111252 CDS Human protein_coding chr12:111884617 chr12:111884628 nonsynonymous SNV 0.994 4 32 hm5C_associated_SNPs_38736 0 0 1 0 1 SH2B3 chr12:111884658 5'GT 111884658 Upstream 31bp
chr8 42829324 42829324 1 + G T TGCT 42829322 + 42829302 42829342 41 GTGTACAAGCTCAAGAAGGGCAGCTCACAACACAAGGTAAA GTGTACAAGCTCAAGAAGGGCATCTCACAACACAAGGTAAA < 41bp 1 0.0429081232895255 1 0.081483006477356 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HOOK3 ENSG00000168172 CDS Human protein_coding chr8:42829322 chr8:42829324 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_38737 0 0 1 0 2 HOOK3 chr8:42829250 3'AG 42829250 Downstream 75bp
chr8 42829324 42829324 1 + G T TGCT 42829322 + 42829302 42829342 41 GTGTACAAGCTCAAGAAGGGCAGCTCACAACACAAGGTAAA GTGTACAAGCTCAAGAAGGGCATCTCACAACACAAGGTAAA < 41bp 1 0.0429081232895255 1 0.081483006477356 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HOOK3 ENSG00000168172 CDS Human protein_coding chr8:42829322 chr8:42829324 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_38737 0 0 1 0 2 HOOK3 chr8:42829337 5'GT 42829337 Upstream 14bp
chr8 104438341 104438341 1 + G T TGCT 104438331 + 104438311 104438351 41 TGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCC TGGAAAATGGATGGGCCAGGCTATGGAGACTAGGAAGAGCC < 41bp 1 0.492409402911736 1 0.2547707259655 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438331 chr8:104438341 stopgain 0.988 1 31 hm5C_associated_SNPs_38738 0 0 1 0 2 DCAF13 chr8:104438284 3'AG 104438284 Downstream 58bp
chr8 104438341 104438341 1 + G T TGCT 104438331 + 104438311 104438351 41 TGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCC TGGAAAATGGATGGGCCAGGCTATGGAGACTAGGAAGAGCC < 41bp 1 0.492409402911736 1 0.2547707259655 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438331 chr8:104438341 stopgain 0.988 1 31 hm5C_associated_SNPs_38738 0 0 1 0 2 DCAF13 chr8:104438373 5'GT 104438373 Upstream 33bp
chr17 42427035 42427035 1 + G T TGCT 42427030 + 42427010 42427050 41 ATGCAGGTTTCTCTGTGTTCCACAGGCCGTGGCATGCGGGG ATGCAGGTTTCTCTGTGTTCCACAGTCCGTGGCATGCGGGG < 41bp 1 0.555203505765947 1 0.552425622940063 experiment 0.889592988468107 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRN ENSG00000030582 CDS Human protein_coding chr17:42427030 chr17:42427035 nonsynonymous SNV 0.170 2 26 hm5C_associated_SNPs_38739 0 0 1 0 2 GRN chr17:42427035 3'AG 42427035 Downstream 1bp
chr17 42427035 42427035 1 + G T TGCT 42427030 + 42427010 42427050 41 ATGCAGGTTTCTCTGTGTTCCACAGGCCGTGGCATGCGGGG ATGCAGGTTTCTCTGTGTTCCACAGTCCGTGGCATGCGGGG < 41bp 1 0.555203505765947 1 0.552425622940063 experiment 0.889592988468107 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRN ENSG00000030582 CDS Human protein_coding chr17:42427030 chr17:42427035 nonsynonymous SNV 0.170 2 26 hm5C_associated_SNPs_38739 0 0 1 0 2 GRN chr17:42427119 5'GT 42427119 Upstream 85bp
chr15 41854893 41854893 1 + C T TGCT 41854884 + 41854864 41854904 41 AACTACGAAGATCGGGGGACCCGCTCCCTCTCCATCTGTTT AACTACGAAGATCGGGGGACCCGCTCCCTTTCCATCTGTTT < 41bp 1 0.0474531130192372 1 0.122664093971252 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41854884 chr15:41854893 nonsynonymous SNV 0.999 1 30 hm5C_associated_SNPs_38740 0 0 0 0 1 TYRO3 chr15:41854916 5'GT 41854916 Upstream 24bp
chr15 41854893 41854893 1 + C T TGCT 41854885 + 41854865 41854905 41 ACTACGAAGATCGGGGGACCCGCTCCCTCTCCATCTGTTTT ACTACGAAGATCGGGGGACCCGCTCCCTTTCCATCTGTTTT < 41bp 1 0.147281054912392 1 0.0838261246681213 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41854885 chr15:41854893 nonsynonymous SNV 0.999 1 29 hm5C_associated_SNPs_38741 0 0 0 0 1 TYRO3 chr15:41854916 5'GT 41854916 Upstream 24bp
chr12 112579948 112579948 1 + T G TGCT 112579938 + 112579918 112579958 41 GAATAGAGGCCAACAGCCCCCCAAAGAGGGTGGTGAAGAGA GAATAGAGGCCAACAGCCCCCCAAAGAGGGGGGTGAAGAGA < 41bp 1 0.323310441939123 1 0.452161818742752 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112579938 chr12:112579948 nonsynonymous SNV . 0 31 hm5C_associated_SNPs_38743 0 0 0 1 1 TRAFD1 chr12:112579893 3'AG 112579893 Downstream 56bp
chr19 5667167 5667167 1 + T C TGCT 5667169 + 5667149 5667189 41 GGGCCGGGGGCTGCCTCCTCCCCCCAGGTTTGTGTCCCACA GGGCCGGGGGCTGCCTCCCCCCCCCAGGTTTGTGTCCCACA < 41bp 1 0.232297384702153 1 0.324173271656036 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SAFB ENSG00000160633 CDS Human protein_coding chr19:5667169 chr19:5667167 synonymous SNV . 0 19 hm5C_associated_SNPs_38744 0 0 1 0 1 SAFB chr19:5667175 5'GT 5667175 Upstream 9bp
chr19 5667167 5667167 1 + T C TGCT 5667170 + 5667150 5667190 41 GGCCGGGGGCTGCCTCCTCCCCCCAGGTTTGTGTCCCACAC GGCCGGGGGCTGCCTCCCCCCCCCAGGTTTGTGTCCCACAC < 41bp 1 0.790503288733202 1 0.609231531620026 experiment 0.418993422533596 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SAFB ENSG00000160633 CDS Human protein_coding chr19:5667170 chr19:5667167 synonymous SNV . 0 18 hm5C_associated_SNPs_38745 0 0 1 0 1 SAFB chr19:5667175 5'GT 5667175 Upstream 9bp
chr19 5667167 5667167 1 + T C TGCT 5667171 + 5667151 5667191 41 GCCGGGGGCTGCCTCCTCCCCCCAGGTTTGTGTCCCACACC GCCGGGGGCTGCCTCCCCCCCCCAGGTTTGTGTCCCACACC < 41bp 1 0.485236352555845 1 0.185346037149429 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SAFB ENSG00000160633 CDS Human protein_coding chr19:5667171 chr19:5667167 synonymous SNV . 0 17 hm5C_associated_SNPs_38746 0 0 1 0 1 SAFB chr19:5667175 5'GT 5667175 Upstream 9bp
chr19 5667167 5667167 1 + T C TGCT 5667172 + 5667152 5667192 41 CCGGGGGCTGCCTCCTCCCCCCAGGTTTGTGTCCCACACCC CCGGGGGCTGCCTCCCCCCCCCAGGTTTGTGTCCCACACCC < 41bp 1 0.628191582883737 1 0.61762261390686 experiment 0.743616834232526 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SAFB ENSG00000160633 CDS Human protein_coding chr19:5667172 chr19:5667167 synonymous SNV . 0 16 hm5C_associated_SNPs_38747 0 0 1 0 1 SAFB chr19:5667175 5'GT 5667175 Upstream 9bp
chr19 5667167 5667167 1 + T C TGCT 5667173 + 5667153 5667193 41 CGGGGGCTGCCTCCTCCCCCCAGGTTTGTGTCCCACACCCG CGGGGGCTGCCTCCCCCCCCCAGGTTTGTGTCCCACACCCG < 41bp 1 0.707199421813734 1 0.669612646102905 experiment 0.585601156372532 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SAFB ENSG00000160633 CDS Human protein_coding chr19:5667173 chr19:5667167 synonymous SNV . 0 15 hm5C_associated_SNPs_38748 0 0 1 0 1 SAFB chr19:5667175 5'GT 5667175 Upstream 9bp
chr5 149754707 149754707 1 + C T TGCT 149754724 + 149754704 149754744 41 TGGCAGCCATGAATGCAGCTCAGGTGAGGCTGGAAGCCGCC TGGTAGCCATGAATGCAGCTCAGGTGAGGCTGGAAGCCGCC < 41bp 1 0.488372738452455 1 0.437227040529251 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754724 chr5:149754707 nonsynonymous SNV 0.016 0 4 hm5C_associated_SNPs_38750 0 0 1 0 1 TCOF1 chr5:149754726 5'GT 149754726 Upstream 20bp
chr10 94773973 94773973 1 + G T TGCT 94773982 + 94773962 94774002 41 TCTGAGCCTGTGCCAGGATTCCAGGGGGATACCCTGCAGCT TCTGAGCCTGTTCCAGGATTCCAGGGGGATACCCTGCAGCT < 41bp 1 0.654619669928617 1 0.858836054801941 experiment 0.690760660142766 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control EXOC6 ENSG00000138190 CDS Human protein_coding chr10:94773982 chr10:94773973 synonymous SNV . 0 12 hm5C_associated_SNPs_38751 0 0 1 0 1 EXOC6 chr10:94774024 5'GT 94774024 Upstream 52bp
chr2 220503458 220503458 1 + T C TGCT 220503474 + 220503454 220503494 41 GACCTCTCCCGATAAGCGCTCGTGGTTCATCCCACCCCTGG GACCCCTCCCGATAAGCGCTCGTGGTTCATCCCACCCCTGG < 41bp 1 0.524273158567172 1 0.799090981483459 experiment 0.951453682865656 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220503474 chr2:220503458 nonsynonymous SNV 0.853 2 5 hm5C_associated_SNPs_38752 0 0 0 0 1 SLC4A3 chr2:220503425 3'AG 220503425 Downstream 34bp
chr16 1703072 1703072 1 + C A TGCT 1703054 + 1703034 1703074 41 GCTTGAGTGATGAAGAGGACCAGAAGCCAGTGCGCCTGCCT GCTTGAGTGATGAAGAGGACCAGAAGCCAGTGCGCCTGACT < 41bp 1 0.539373869709229 1 0.721439599990845 experiment 0.921252260581543 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CRAMP1 ENSG00000007545 CDS Human protein_coding chr16:1703054 chr16:1703072 nonsynonymous SNV 0.953 2 39 hm5C_associated_SNPs_38753 0 0 1 0 2 CRAMP1 chr16:1703034 3'AG 1703034 Downstream 39bp
chr16 1703072 1703072 1 + C A TGCT 1703054 + 1703034 1703074 41 GCTTGAGTGATGAAGAGGACCAGAAGCCAGTGCGCCTGCCT GCTTGAGTGATGAAGAGGACCAGAAGCCAGTGCGCCTGACT < 41bp 1 0.539373869709229 1 0.721439599990845 experiment 0.921252260581543 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CRAMP1 ENSG00000007545 CDS Human protein_coding chr16:1703054 chr16:1703072 nonsynonymous SNV 0.953 2 39 hm5C_associated_SNPs_38753 0 0 1 0 2 CRAMP1 chr16:1703157 5'GT 1703157 Upstream 86bp
chrX 19373827 19373827 1 + C T TGCT 19373838 + 19373818 19373858 41 TATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT TATCCTGTGTGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT < 41bp 1 0.612279076704734 1 0.359048783779144 experiment 0.775441846590533 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19373838 chrX:19373827 synonymous SNV . 0 10 hm5C_associated_SNPs_38754 0 0 1 0 2 PDHA1 chrX:19373804 3'AG 19373804 Downstream 24bp
chrX 19373827 19373827 1 + C T TGCT 19373838 + 19373818 19373858 41 TATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT TATCCTGTGTGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT < 41bp 1 0.612279076704734 1 0.359048783779144 experiment 0.775441846590533 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19373838 chrX:19373827 synonymous SNV . 0 10 hm5C_associated_SNPs_38754 0 0 1 0 2 PDHA1 chrX:19373875 5'GT 19373875 Upstream 49bp
chr8 110569202 110569202 1 + C A TGCT 110569185 + 110569165 110569205 41 TTGTTATTAAGAAGAGAGAACCATTGAATTTTGGCATCCCA TTGTTATTAAGAAGAGAGAACCATTGAATTTTGGCATACCA < 41bp 1 0.0324512315411791 1 0.102491855621338 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110569185 chr8:110569202 synonymous SNV . 0 38 hm5C_associated_SNPs_38755 0 0 1 0 2 EBAG9 chr8:110569164 3'AG 110569164 Downstream 39bp
chr8 110569202 110569202 1 + C A TGCT 110569185 + 110569165 110569205 41 TTGTTATTAAGAAGAGAGAACCATTGAATTTTGGCATCCCA TTGTTATTAAGAAGAGAGAACCATTGAATTTTGGCATACCA < 41bp 1 0.0324512315411791 1 0.102491855621338 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110569185 chr8:110569202 synonymous SNV . 0 38 hm5C_associated_SNPs_38755 0 0 1 0 2 EBAG9 chr8:110569271 5'GT 110569271 Upstream 70bp
chr5 167943865 167943865 1 + G A TGCT 167943878 + 167943858 167943898 41 CATAACCGGTTGAATGACTACATCTTCTCCTTTGACAAAAT CATAACCAGTTGAATGACTACATCTTCTCCTTTGACAAAAT < 41bp 1 0.173012317327222 1 0.0913183093070984 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RARS ENSG00000113643 CDS Human protein_coding chr5:167943878 chr5:167943865 nonsynonymous SNV 0.958 4 8 hm5C_associated_SNPs_38756 1 0 1 0 2 RARS chr5:167943783 3'AG 167943783 Downstream 83bp
chr5 167943865 167943865 1 + G A TGCT 167943878 + 167943858 167943898 41 CATAACCGGTTGAATGACTACATCTTCTCCTTTGACAAAAT CATAACCAGTTGAATGACTACATCTTCTCCTTTGACAAAAT < 41bp 1 0.173012317327222 1 0.0913183093070984 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RARS ENSG00000113643 CDS Human protein_coding chr5:167943878 chr5:167943865 nonsynonymous SNV 0.958 4 8 hm5C_associated_SNPs_38756 1 0 1 0 2 RARS chr5:167943955 5'GT 167943955 Upstream 91bp
chr17 80680735 80680735 1 + G T TGCT 80680754 + 80680734 80680774 41 TGGTGACGTGCTGTGGATACCTCCCCCAGGTGAGTGCACGG TTGTGACGTGCTGTGGATACCTCCCCCAGGTGAGTGCACGG < 41bp 1 0.447870161623369 1 0.73688530921936 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80680754 chr17:80680735 synonymous SNV . 0 2 hm5C_associated_SNPs_38771 0 0 1 0 2 FN3KRP chr17:80680680 3'AG 80680680 Downstream 56bp
chr17 80680735 80680735 1 + G T TGCT 80680754 + 80680734 80680774 41 TGGTGACGTGCTGTGGATACCTCCCCCAGGTGAGTGCACGG TTGTGACGTGCTGTGGATACCTCCCCCAGGTGAGTGCACGG < 41bp 1 0.447870161623369 1 0.73688530921936 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80680754 chr17:80680735 synonymous SNV . 0 2 hm5C_associated_SNPs_38771 0 0 1 0 2 FN3KRP chr17:80680762 5'GT 80680762 Upstream 28bp
chr16 1818243 1818243 1 + G A TGCT 1818253 + 1818233 1818273 41 CCCGTCCCGGGGGCATCATCCACGTGTATGGCGATGACAGC CCCGTCCCGGAGGCATCATCCACGTGTATGGCGATGACAGC < 41bp 1 0.493198905428742 1 0.514560401439667 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1818253 chr16:1818243 synonymous SNV . 0 11 hm5C_associated_SNPs_38772 0 0 1 0 1 MAPK8IP3 chr16:1818200 3'AG 1818200 Downstream 44bp
chr15 52353621 52353621 1 + C T TGCT 52353617 + 52353597 52353637 41 ATGGATGAGCCAATTTCAAGCCATCCTTTTCATATTGAAGA ATGGATGAGCCAATTTCAAGCCATTCTTTTCATATTGAAGA < 41bp 1 0.0497247496860612 1 0.121957808732986 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52353617 chr15:52353621 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_38773 0 0 1 0 1 MAPK6 chr15:52353697 5'GT 52353697 Upstream 77bp
chr10 105174894 105174894 1 + G T TGCT 105174899 + 105174879 105174919 41 TACCACATCGGGGATGAGGTCAAGTGCCGGGTGAGCCTCCT TACCACATCGGGGATTAGGTCAAGTGCCGGGTGAGCCTCCT < 41bp 1 0.464155154474886 1 0.65550035238266 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105174899 chr10:105174894 stopgain 0.896 1 16 hm5C_associated_SNPs_38774 0 0 1 0 1 PDCD11 chr10:105174908 5'GT 105174908 Upstream 15bp
chr12 56505268 56505268 1 + C T TGCT 56505263 + 56505243 56505283 41 TTCTTCCTGTTTTCCAGGCCCTCCTCCAGAGTTCTGCAAGT TTCTTCCTGTTTTCCAGGCCCTCCTTCAGAGTTCTGCAAGT < 41bp 1 0.235681654601508 1 0.176472753286362 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56505263 chr12:56505268 synonymous SNV . 0 26 hm5C_associated_SNPs_38775 0 0 1 0 2 PA2G4 chr12:56505260 3'AG 56505260 Downstream 9bp
chr12 56505268 56505268 1 + C T TGCT 56505263 + 56505243 56505283 41 TTCTTCCTGTTTTCCAGGCCCTCCTCCAGAGTTCTGCAAGT TTCTTCCTGTTTTCCAGGCCCTCCTTCAGAGTTCTGCAAGT < 41bp 1 0.235681654601508 1 0.176472753286362 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56505263 chr12:56505268 synonymous SNV . 0 26 hm5C_associated_SNPs_38775 0 0 1 0 2 PA2G4 chr12:56505313 5'GT 56505313 Upstream 46bp
chr7 6634134 6634134 1 + G T TGCT 6634139 + 6634119 6634159 41 CTGCTGTTTGGTGCCGGGATCCATTCAGACGCTGAAGCAGA CTGCTGTTTGGTGCCTGGATCCATTCAGACGCTGAAGCAGA < 41bp 1 0.0404842473627782 1 0.367957413196564 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6634139 chr7:6634134 synonymous SNV . 0 16 hm5C_associated_SNPs_38776 0 0 1 0 2 C7orf26 chr7:6634066 3'AG 6634066 Downstream 69bp
chr7 6634134 6634134 1 + G T TGCT 6634139 + 6634119 6634159 41 CTGCTGTTTGGTGCCGGGATCCATTCAGACGCTGAAGCAGA CTGCTGTTTGGTGCCTGGATCCATTCAGACGCTGAAGCAGA < 41bp 1 0.0404842473627782 1 0.367957413196564 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6634139 chr7:6634134 synonymous SNV . 0 16 hm5C_associated_SNPs_38776 0 0 1 0 2 C7orf26 chr7:6634231 5'GT 6634231 Upstream 98bp
chr19 42410875 42410875 1 + C T TGCT 42410885 + 42410865 42410905 41 AGGAATTTTGCCGCCTGAGACCCCTCCTGTCTCAGCTTGGG AGGAATTTTGTCGCCTGAGACCCCTCCTGTCTCAGCTTGGG < 41bp 1 0.152045425446856 1 0.0720550715923309 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42410885 chr19:42410875 nonsynonymous SNV 0.980 0 11 hm5C_associated_SNPs_38777 0 0 1 0 2 ARHGEF1 chr19:42410855 3'AG 42410855 Downstream 21bp
chr19 42410875 42410875 1 + C T TGCT 42410885 + 42410865 42410905 41 AGGAATTTTGCCGCCTGAGACCCCTCCTGTCTCAGCTTGGG AGGAATTTTGTCGCCTGAGACCCCTCCTGTCTCAGCTTGGG < 41bp 1 0.152045425446856 1 0.0720550715923309 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42410885 chr19:42410875 nonsynonymous SNV 0.980 0 11 hm5C_associated_SNPs_38777 0 0 1 0 2 ARHGEF1 chr19:42410955 5'GT 42410955 Upstream 81bp
chr7 101821755 101821755 1 + G T TGCT 101821775 + 101821755 101821795 41 GCCATAGAGGTGCTGACCCGCTCCAGCCTAGAAGTTGAGTT TCCATAGAGGTGCTGACCCGCTCCAGCCTAGAAGTTGAGTT < 41bp 1 0.465799309999626 1 0.847205221652985 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101821775 chr7:101821755 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_38778 0 0 1 0 2 CUX1 chr7:101821749 3'AG 101821749 Downstream 7bp
chr7 101821755 101821755 1 + G T TGCT 101821775 + 101821755 101821795 41 GCCATAGAGGTGCTGACCCGCTCCAGCCTAGAAGTTGAGTT TCCATAGAGGTGCTGACCCGCTCCAGCCTAGAAGTTGAGTT < 41bp 1 0.465799309999626 1 0.847205221652985 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101821775 chr7:101821755 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_38778 0 0 1 0 2 CUX1 chr7:101821755 3'AG 101821755 Downstream 1bp
chr7 4830438 4830438 1 + C T TGCT 4830446 + 4830426 4830466 41 TGCTGCCCTGCCCAGGTGTCCCCCCCAGGTGGTCACCGTGC TGCTGCCCTGCCTAGGTGTCCCCCCCAGGTGGTCACCGTGC < 41bp 1 0.0787013284885063 1 0.0150521695613861 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4830446 chr7:4830438 synonymous SNV . 0 13 hm5C_associated_SNPs_38780 0 0 1 0 1 AP5Z1 chr7:4830518 5'GT 4830518 Upstream 81bp
chr14 50789405 50789405 1 + C T TGCT 50789391 + 50789371 50789411 41 AAATACAAGATTCAGGCGATCGACGCCACCGACTCTTGTAT AAATACAAGATTCAGGCGATCGACGCCACCGACTTTTGTAT < 41bp 1 0.607871128816165 1 0.228090286254883 experiment 0.784257742367669 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP5S ENSG00000125375 CDS Human protein_coding chr14:50789391 chr14:50789405 nonsynonymous SNV 0.992 5 35 hm5C_associated_SNPs_38783 0 0 1 0 1 ATP5S chr14:50789437 5'GT 50789437 Upstream 33bp
chr14 50789405 50789405 1 + C T TGCT 50789396 + 50789376 50789416 41 CAAGATTCAGGCGATCGACGCCACCGACTCTTGTATCATGA CAAGATTCAGGCGATCGACGCCACCGACTTTTGTATCATGA < 41bp 1 0.0716124178838685 1 0.152482151985168 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP5S ENSG00000125375 CDS Human protein_coding chr14:50789396 chr14:50789405 nonsynonymous SNV 0.992 5 30 hm5C_associated_SNPs_38784 0 0 1 0 1 ATP5S chr14:50789437 5'GT 50789437 Upstream 33bp
chr3 57294019 57294019 1 + C A THCA 57294032 + 57294012 57294052 41 AGAATCGCATTTATTAGTCACTTGTGACTGTTTAAAGTAAG AGAATCGAATTTATTAGTCACTTGTGACTGTTTAAAGTAAG < 41bp 1 0.135496759595666 1 0.110286921262741 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control APPL1 ENSG00000157500 CDS Human protein_coding chr3:57294032 chr3:57294019 nonsynonymous SNV 0.999 1 8 hm5C_associated_SNPs_38787 0 0 1 0 1 APPL1 chr3:57294047 5'GT 57294047 Upstream 29bp
chr3 183369013 183369013 1 + G T THCA 183369020 + 183369000 183369040 41 CATGAAGCAAGACGGTACCACATACTTGGGAATGAAATGAT CATGAAGCAAGACTGTACCACATACTTGGGAATGAAATGAT < 41bp 1 0.0962907885365241 1 0.150333076715469 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLHL24 ENSG00000114796 CDS Human protein_coding chr3:183369020 chr3:183369013 nonsynonymous SNV 0.963 2 14 hm5C_associated_SNPs_38788 0 0 1 0 1 KLHL24 chr3:183369064 5'GT 183369064 Upstream 52bp
chr14 105175694 105175694 1 + C A THCA 105175682 + 105175662 105175702 41 CCAAGTTTGATGTGGAGGTTCTCAAACAACTCCTTAAGCTC CCAAGTTTGATGTGGAGGTTCTCAAACAACTCATTAAGCTC < 41bp 1 0.479483733504038 1 0.848838448524475 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105175682 chr14:105175694 nonsynonymous SNV 0.961 0 33 hm5C_associated_SNPs_38791 0 0 1 2 2 INF2 chr14:105175618 3'AG 105175618 Downstream 77bp
chr14 105175694 105175694 1 + C A THCA 105175682 + 105175662 105175702 41 CCAAGTTTGATGTGGAGGTTCTCAAACAACTCCTTAAGCTC CCAAGTTTGATGTGGAGGTTCTCAAACAACTCATTAAGCTC < 41bp 1 0.479483733504038 1 0.848838448524475 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105175682 chr14:105175694 nonsynonymous SNV 0.961 0 33 hm5C_associated_SNPs_38791 0 0 1 2 2 INF2 chr14:105175720 5'GT 105175720 Upstream 27bp
chr16 72139460 72139460 1 + C A THCA 72139447 + 72139427 72139467 41 CGTTCGGAAGTGCATCGTTGCCACCAATATTGCCGAGACGT CGTTCGGAAGTGCATCGTTGCCACCAATATTGCAGAGACGT < 41bp 1 0.0528297739257155 1 0.0865331292152405 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72139447 chr16:72139460 nonsynonymous SNV . 0 34 hm5C_associated_SNPs_38792 0 0 1 0 2 DHX38 chr16:72139416 3'AG 72139416 Downstream 45bp
chr16 72139460 72139460 1 + C A THCA 72139447 + 72139427 72139467 41 CGTTCGGAAGTGCATCGTTGCCACCAATATTGCCGAGACGT CGTTCGGAAGTGCATCGTTGCCACCAATATTGCAGAGACGT < 41bp 1 0.0528297739257155 1 0.0865331292152405 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72139447 chr16:72139460 nonsynonymous SNV . 0 34 hm5C_associated_SNPs_38792 0 0 1 0 2 DHX38 chr16:72139523 5'GT 72139523 Upstream 64bp
chrX 117815662 117815662 1 + T C THCA 117815659 + 117815639 117815679 41 TCTTCTATTGTGATATAGGTCAATGCTGGTCCATTAGCATA TCTTCTATTGTGATATAGGTCAACGCTGGTCCATTAGCATA < 41bp 1 0.313773007654057 1 0.0763935744762421 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117815659 chrX:117815662 synonymous SNV . 0 24 hm5C_associated_SNPs_38795 0 0 1 0 2 DOCK11 chrX:117815657 3'AG 117815657 Downstream 6bp
chrX 117815662 117815662 1 + T C THCA 117815659 + 117815639 117815679 41 TCTTCTATTGTGATATAGGTCAATGCTGGTCCATTAGCATA TCTTCTATTGTGATATAGGTCAACGCTGGTCCATTAGCATA < 41bp 1 0.313773007654057 1 0.0763935744762421 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117815659 chrX:117815662 synonymous SNV . 0 24 hm5C_associated_SNPs_38795 0 0 1 0 2 DOCK11 chrX:117815757 5'GT 117815757 Upstream 96bp
chr7 73731926 73731926 1 + C G THCA 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTG < 41bp 1 0.386981799184629 1 0.453015625476837 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731926 nonsynonymous SNV 0.988 3 41 hm5C_associated_SNPs_38796 0 0 0 0 1 CLIP2 chr7:73731997 5'GT 73731997 Upstream 72bp
chr19 14562693 14562693 1 + G T THCA 14562705 + 14562685 14562725 41 ACCATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGG ACCATCCCTTGGAACCCTACCCCCTCAATGGGGGGACCTGG < 41bp 1 0.109215962028489 1 0.0728162825107574 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562705 chr19:14562693 synonymous SNV . 0 9 hm5C_associated_SNPs_38797 0 0 1 0 1 PKN1 chr19:14562641 3'AG 14562641 Downstream 53bp
chr19 14562693 14562693 1 + G T THCA 14562706 + 14562686 14562726 41 CCATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGGG CCATCCCTTGGAACCCTACCCCCTCAATGGGGGGACCTGGG < 41bp 1 0.0478629482303473 1 0.304154098033905 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562706 chr19:14562693 synonymous SNV . 0 8 hm5C_associated_SNPs_38798 0 0 1 0 1 PKN1 chr19:14562641 3'AG 14562641 Downstream 53bp
chr19 14562693 14562693 1 + G T THCA 14562708 + 14562688 14562728 41 ATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGGGAC ATCCCTTGGAACCCTACCCCCTCAATGGGGGGACCTGGGAC < 41bp 1 0.679522068701818 1 0.94440495967865 experiment 0.640955862596365 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562708 chr19:14562693 synonymous SNV . 0 6 hm5C_associated_SNPs_38799 0 0 1 0 1 PKN1 chr19:14562641 3'AG 14562641 Downstream 53bp
chr9 137323832 137323832 1 + C T THCA 137323830 + 137323810 137323850 41 GCTGCCTGCGCGCCATCGTCCTCTTTAACCCTGGTATGGCC GCTGCCTGCGCGCCATCGTCCTTTTTAACCCTGGTATGGCC < 41bp 1 0.0359742130846275 1 0.144172161817551 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RXRA ENSG00000186350 CDS Human protein_coding chr9:137323830 chr9:137323832 synonymous SNV . 0 23 hm5C_associated_SNPs_38801 0 0 1 0 1 RXRA chr9:137323842 5'GT 137323842 Upstream 11bp
chr9 131296128 131296128 1 + G C THCA 131296139 + 131296119 131296159 41 TCCACCCCAGAGTGGGGGACCTCATTCTTGCTCATCTACAT TCCACCCCACAGTGGGGGACCTCATTCTTGCTCATCTACAT < 41bp 1 0.292357508903708 1 0.0578155219554901 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GLE1 ENSG00000119392 CDS Human protein_coding chr9:131296139 chr9:131296128 nonsynonymous SNV 0.998 0 10 hm5C_associated_SNPs_38802 0 0 1 0 1 GLE1 chr9:131296040 3'AG 131296040 Downstream 89bp
chr10 71243586 71243586 1 + T C THCA 71243594 + 71243574 71243614 41 TGGTCTCCTTCATTGGTGTGCTGGCGTCCCTCCGTGACAAC TGGTCTCCTTCACTGGTGTGCTGGCGTCCCTCCGTGACAAC < 41bp 1 0.514146778096065 1 0.336506336927414 experiment 0.97170644380787 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243594 chr10:71243586 nonsynonymous SNV 0.997 1 13 hm5C_associated_SNPs_38803 0 0 1 0 1 TSPAN15 chr10:71243632 5'GT 71243632 Upstream 47bp
chr10 71243586 71243586 1 + T C THCA 71243598 + 71243578 71243618 41 CTCCTTCATTGGTGTGCTGGCGTCCCTCCGTGACAACCTGT CTCCTTCACTGGTGTGCTGGCGTCCCTCCGTGACAACCTGT < 41bp 1 0.108661842952399 1 0.172040104866028 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243598 chr10:71243586 nonsynonymous SNV 0.997 1 9 hm5C_associated_SNPs_38804 0 0 1 0 1 TSPAN15 chr10:71243632 5'GT 71243632 Upstream 47bp
chr10 71243586 71243586 1 + T C THCA 71243601 + 71243581 71243621 41 CTTCATTGGTGTGCTGGCGTCCCTCCGTGACAACCTGTACC CTTCACTGGTGTGCTGGCGTCCCTCCGTGACAACCTGTACC < 41bp 1 0.0560846118287794 1 0.132752597332001 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243601 chr10:71243586 nonsynonymous SNV 0.997 1 6 hm5C_associated_SNPs_38805 0 0 1 0 1 TSPAN15 chr10:71243632 5'GT 71243632 Upstream 47bp
chr10 71243586 71243586 1 + T C THCA 71243606 + 71243586 71243626 41 TTGGTGTGCTGGCGTCCCTCCGTGACAACCTGTACCTTCTC CTGGTGTGCTGGCGTCCCTCCGTGACAACCTGTACCTTCTC < 41bp 1 0.637728028265707 1 0.64732950925827 experiment 0.724543943468586 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243606 chr10:71243586 nonsynonymous SNV 0.997 1 1 hm5C_associated_SNPs_38806 0 0 1 0 1 TSPAN15 chr10:71243632 5'GT 71243632 Upstream 47bp
chr12 132334395 132334395 1 + C T THCA 132334394 + 132334374 132334414 41 ATAACGTAGAGGAAGGATACCCGCGCCCCGTCTCCGACTTC ATAACGTAGAGGAAGGATACCTGCGCCCCGTCTCCGACTTC < 41bp 1 0.484282217082249 1 0.0625821352005005 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MMP17 ENSG00000198598 CDS Human protein_coding chr12:132334394 chr12:132334395 nonsynonymous SNV 0.975 4 22 hm5C_associated_SNPs_38807 0 0 1 0 1 MMP17 chr12:132334347 3'AG 132334347 Downstream 49bp
chr21 42769555 42769555 1 + G T THCA 42769560 + 42769540 42769580 41 AGTTCTCCTGGAGGAGGGGTCAGCCACGGTTCCCCGACTGG AGTTCTCCTGGAGGATGGGTCAGCCACGGTTCCCCGACTGG < 41bp 1 0.280126953406362 1 0.406010180711746 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MX2 ENSG00000183486 CDS Human protein_coding chr21:42769560 chr21:42769555 nonsynonymous SNV 0.138 0 16 hm5C_associated_SNPs_38808 0 0 0 0 1 MX2 chr21:42769618 5'GT 42769618 Upstream 64bp
chr3 183903979 183903979 1 + G T THCA 183903969 + 183903949 183903989 41 AGGCCGGGGTCTCACAGCGACTGCGCGGACGGGTTCCTGAG AGGCCGGGGTCTCACAGCGACTGCGCGGACTGGTTCCTGAG < 41bp 1 0.654188129444353 1 0.413985848426819 experiment 0.691623741111294 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCF3 ENSG00000161204 UTR5 Human protein_coding chr3:183903969 chr3:183903979 . . 0 31 hm5C_associated_SNPs_38810 0 0 0 0 1 ABCF3 chr3:183904068 5'GT 183904068 Upstream 90bp
chr21 40191649 40191649 1 + G T THCA 40191635 + 40191615 40191655 41 TACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACC TACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGTCAAACC < 41bp 1 0.22963204914206 1 0.196422249078751 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191635 chr21:40191649 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_38812 0 0 0 0 1 ETS2 chr21:40191690 5'GT 40191690 Upstream 42bp
chr21 40191649 40191649 1 + G T THCA 40191636 + 40191616 40191656 41 ACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACCA ACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGTCAAACCA < 41bp 1 0.466889538746938 1 0.49292317032814 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191636 chr21:40191649 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_38813 0 0 0 0 1 ETS2 chr21:40191690 5'GT 40191690 Upstream 42bp
chr21 40191649 40191649 1 + G T THCA 40191637 + 40191617 40191657 41 CATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACCAG CATCCAAGAGAGGAGTGACCCAGTGGAGCAAGTCAAACCAG < 41bp 1 0.68019059514581 1 0.817343890666962 experiment 0.639618809708379 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191637 chr21:40191649 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_38814 0 0 0 0 1 ETS2 chr21:40191690 5'GT 40191690 Upstream 42bp
chrX 153691996 153691996 1 + G T THCA 153692001 + 153691981 153692021 41 GCCTGCCTGGGCTCCGGGGACCCGCACTGTGGTTGGTGTGT GCCTGCCTGGGCTCCTGGGACCCGCACTGTGGTTGGTGTGT < 41bp 1 0.100164118182199 1 0.0980897545814514 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153692001 chrX:153691996 nonsynonymous SNV 0.923 4 16 hm5C_associated_SNPs_38815 0 0 1 0 2 PLXNA3 chrX:153691933 3'AG 153691933 Downstream 64bp
chrX 153691996 153691996 1 + G T THCA 153692001 + 153691981 153692021 41 GCCTGCCTGGGCTCCGGGGACCCGCACTGTGGTTGGTGTGT GCCTGCCTGGGCTCCTGGGACCCGCACTGTGGTTGGTGTGT < 41bp 1 0.100164118182199 1 0.0980897545814514 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153692001 chrX:153691996 nonsynonymous SNV 0.923 4 16 hm5C_associated_SNPs_38815 0 0 1 0 2 PLXNA3 chrX:153692033 5'GT 153692033 Upstream 38bp
chr6 30547740 30547740 1 + G T THCA 30547729 + 30547709 30547749 41 CCGTATCTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAG CCGTATCTGAGGAACAGCAGCCTGCACTCAATGGCAAAAAG < 41bp 1 0.0706005369677115 1 0.042596310377121 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30547729 chr6:30547740 nonsynonymous SNV 0.907 1 32 hm5C_associated_SNPs_38816 0 0 1 0 2 ABCF1 chr6:30547708 3'AG 30547708 Downstream 33bp
chr6 30547740 30547740 1 + G T THCA 30547729 + 30547709 30547749 41 CCGTATCTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAG CCGTATCTGAGGAACAGCAGCCTGCACTCAATGGCAAAAAG < 41bp 1 0.0706005369677115 1 0.042596310377121 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30547729 chr6:30547740 nonsynonymous SNV 0.907 1 32 hm5C_associated_SNPs_38816 0 0 1 0 2 ABCF1 chr6:30547782 5'GT 30547782 Upstream 43bp
chr6 30547740 30547740 1 + G T THCA 30547735 + 30547715 30547755 41 CTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAGGGAAAG CTGAGGAACAGCAGCCTGCACTCAATGGCAAAAAGGGAAAG < 41bp 1 0.547540922433471 1 0.528071343898773 experiment 0.904918155133058 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30547735 chr6:30547740 nonsynonymous SNV 0.907 1 26 hm5C_associated_SNPs_38817 0 0 1 0 2 ABCF1 chr6:30547708 3'AG 30547708 Downstream 33bp
chr6 30547740 30547740 1 + G T THCA 30547735 + 30547715 30547755 41 CTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAGGGAAAG CTGAGGAACAGCAGCCTGCACTCAATGGCAAAAAGGGAAAG < 41bp 1 0.547540922433471 1 0.528071343898773 experiment 0.904918155133058 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30547735 chr6:30547740 nonsynonymous SNV 0.907 1 26 hm5C_associated_SNPs_38817 0 0 1 0 2 ABCF1 chr6:30547782 5'GT 30547782 Upstream 43bp
chr5 134130604 134130604 1 + C A THCA 134130605 + 134130585 134130625 41 ATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGGC ATGTTTTCAGCTACTTTCCACAGAGCTATGGAGGCTTTGGC < 41bp 1 0.401686689121677 1 0.0960309207439423 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134130605 chr5:134130604 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_38818 0 0 1 2 1 DDX46 chr5:134130540 3'AG 134130540 Downstream 65bp
chr14 93043721 93043721 1 + G T THCA 93043725 + 93043705 93043745 41 ATGTTCCTGGTTCGCCGGGACAGCAGCTCGAAGCAGCTGGT ATGTTCCTGGTTCGCCTGGACAGCAGCTCGAAGCAGCTGGT < 41bp 1 0.544270161635369 1 0.384941399097443 experiment 0.911459676729263 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93043725 chr14:93043721 nonsynonymous SNV 0.015 3 17 hm5C_associated_SNPs_38819 0 0 0 0 1 RIN3 chr14:93043705 3'AG 93043705 Downstream 17bp
chr20 54970759 54970759 1 + C A THCA 54970762 + 54970742 54970782 41 CACCCTCGGAGCAGCTCCTGCATCTCATCAAACTCGGTAGA CACCCTCGGAGCAGCTCATGCATCTCATCAAACTCGGTAGA < 41bp 1 0.244174493840603 1 0.148891389369965 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CSTF1 ENSG00000101138 CDS Human protein_coding chr20:54970762 chr20:54970759 nonsynonymous SNV 0.999 1 18 hm5C_associated_SNPs_38820 0 0 1 0 1 CSTF1 chr20:54970777 5'GT 54970777 Upstream 19bp
chr6 151646999 151646999 1 + C T THCA 151647007 + 151646987 151647027 41 ACTTAAAATATGCTGGGGACCATCACCATCACAGGTAAGGC ACTTAAAATATGTTGGGGACCATCACCATCACAGGTAAGGC < 41bp 1 0.1546950143397 1 0.105598211288452 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control AKAP12 ENSG00000131016 CDS Human protein_coding chr6:151647007 chr6:151646999 synonymous SNV . 0 13 hm5C_associated_SNPs_38825 0 0 1 1 1 AKAP12 chr6:151647020 5'GT 151647020 Upstream 22bp
chr1 39926406 39926406 1 + G A THCA 39926397 + 39926377 39926417 41 CTCGAGTGATGGATTTCTTCCGGCGCATTGATAAGGACCAG CTCGAGTGATGGATTTCTTCCGGCGCATTAATAAGGACCAG < 41bp 1 0.223287433707381 1 0.828563988208771 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39926397 chr1:39926406 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_38826 0 0 1 0 1 MACF1 chr1:39926466 5'GT 39926466 Upstream 61bp
chr22 40802633 40802633 1 + C G THCA 40802642 + 40802622 40802662 41 CAGGGCCAGCTCCTGGGGGCCGGCACCCTCACCAACCTCTC CAGGGCCAGCTGCTGGGGGCCGGCACCCTCACCAACCTCTC < 41bp 1 0.679070453192653 1 0.8268803358078 experiment 0.641859093614694 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40802642 chr22:40802633 synonymous SNV . 0 12 hm5C_associated_SNPs_38827 0 0 1 0 1 SGSM3 chr22:40802666 5'GT 40802666 Upstream 34bp
chrX 17705940 17705940 1 + T C THCA 17705955 + 17705935 17705975 41 CTTCCTCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGC CTTCCCCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGC < 41bp 1 0.345399757386405 1 0.0400842130184174 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NHS ENSG00000188158 CDS Human protein_coding chrX:17705955 chrX:17705940 nonsynonymous SNV 0.994 2 6 hm5C_associated_SNPs_38830 0 0 0 0 2 NHS chrX:17705862 3'AG 17705862 Downstream 79bp
chrX 17705940 17705940 1 + T C THCA 17705955 + 17705935 17705975 41 CTTCCTCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGC CTTCCCCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGC < 41bp 1 0.345399757386405 1 0.0400842130184174 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NHS ENSG00000188158 CDS Human protein_coding chrX:17705955 chrX:17705940 nonsynonymous SNV 0.994 2 6 hm5C_associated_SNPs_38830 0 0 0 0 2 NHS chrX:17706014 5'GT 17706014 Upstream 75bp
chrX 17705940 17705940 1 + T C THCA 17705959 + 17705939 17705979 41 CTCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGCACCG CCCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGCACCG < 41bp 1 0.745216834015482 1 0.757605671882629 experiment 0.509566331969036 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NHS ENSG00000188158 CDS Human protein_coding chrX:17705959 chrX:17705940 nonsynonymous SNV 0.994 2 2 hm5C_associated_SNPs_38831 0 0 0 0 2 NHS chrX:17705862 3'AG 17705862 Downstream 79bp
chrX 17705940 17705940 1 + T C THCA 17705959 + 17705939 17705979 41 CTCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGCACCG CCCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGCACCG < 41bp 1 0.745216834015482 1 0.757605671882629 experiment 0.509566331969036 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NHS ENSG00000188158 CDS Human protein_coding chrX:17705959 chrX:17705940 nonsynonymous SNV 0.994 2 2 hm5C_associated_SNPs_38831 0 0 0 0 2 NHS chrX:17706014 5'GT 17706014 Upstream 75bp
chr7 99159527 99159527 1 + G T THCA 99159535 + 99159515 99159555 41 ACCTGTTCCTCAGGTGCCTGCTCTTCCCCGTGAGGGAAGCC ACCTGTTCCTCATGTGCCTGCTCTTCCCCGTGAGGGAAGCC < 41bp 1 0.165164210719012 1 0.0743283629417419 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF655 ENSG00000197343 CDS Human protein_coding chr7:99159535 chr7:99159527 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_38833 0 0 1 0 2 ZNF655 chr7:99159511 3'AG 99159511 Downstream 17bp
chr7 99159527 99159527 1 + G T THCA 99159535 + 99159515 99159555 41 ACCTGTTCCTCAGGTGCCTGCTCTTCCCCGTGAGGGAAGCC ACCTGTTCCTCATGTGCCTGCTCTTCCCCGTGAGGGAAGCC < 41bp 1 0.165164210719012 1 0.0743283629417419 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF655 ENSG00000197343 CDS Human protein_coding chr7:99159535 chr7:99159527 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_38833 0 0 1 0 2 ZNF655 chr7:99159596 5'GT 99159596 Upstream 70bp
chr12 107237687 107237687 1 + C A THCA 107237701 + 107237681 107237721 41 TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTCAAAGA TGTTCCAGAGCCCATCGAAACATCCGAAAATTTCTCAAAGA < 41bp 1 0.190740844159341 1 0.272669941186905 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107237701 chr12:107237687 synonymous SNV . 0 7 hm5C_associated_SNPs_38837 0 0 0 0 2 RIC8B chr12:107237630 3'AG 107237630 Downstream 58bp
chr12 107237687 107237687 1 + C A THCA 107237701 + 107237681 107237721 41 TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTCAAAGA TGTTCCAGAGCCCATCGAAACATCCGAAAATTTCTCAAAGA < 41bp 1 0.190740844159341 1 0.272669941186905 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107237701 chr12:107237687 synonymous SNV . 0 7 hm5C_associated_SNPs_38837 0 0 0 0 2 RIC8B chr12:107237725 5'GT 107237725 Upstream 39bp
chr8 56866442 56866442 1 + A G THCA 56866453 + 56866433 56866473 41 TTAGTCCCAAGCCACAGAAGCCATGGGATAAAGATGCCTGG TTAGTCCCAGGCCACAGAAGCCATGGGATAAAGATGCCTGG < 41bp 1 0.146849212167529 1 0.4024738073349 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56866453 chr8:56866442 nonsynonymous SNV 0.992 1 10 hm5C_associated_SNPs_38839 0 0 1 0 1 LYN chr8:56866391 3'AG 56866391 Downstream 52bp
chr10 91174530 91174530 1 + C T THCA 91174534 + 91174514 91174554 41 GAGGGACTGCGCCGCCCGGACGGCCTGCAGAGCGCTGCCAT GAGGGACTGCGCCGCCTGGACGGCCTGCAGAGCGCTGCCAT < 41bp 1 0.79245459350999 1 0.338662207126617 experiment 0.41509081298002 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFIT5 ENSG00000152778 UTR5 Human protein_coding chr10:91174534 chr10:91174530 . . 0 17 hm5C_associated_SNPs_38840 0 0 0 0 1 IFIT5 chr10:91174560 5'GT 91174560 Upstream 31bp
chr19 46519606 46519606 1 + C A THCA 46519595 + 46519575 46519615 41 GGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTTTGTGAA GGTGGTCGCGCGCTCCGCTTCGACCCCACGGACTTTGTGAA < 41bp 1 0.256933446058912 1 0.322009384632111 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46519595 chr19:46519606 nonsynonymous SNV 0.999 3 32 hm5C_associated_SNPs_38841 0 0 0 0 2 CCDC61 chr19:46519576 3'AG 46519576 Downstream 31bp
chr19 46519606 46519606 1 + C A THCA 46519595 + 46519575 46519615 41 GGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTTTGTGAA GGTGGTCGCGCGCTCCGCTTCGACCCCACGGACTTTGTGAA < 41bp 1 0.256933446058912 1 0.322009384632111 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46519595 chr19:46519606 nonsynonymous SNV 0.999 3 32 hm5C_associated_SNPs_38841 0 0 0 0 2 CCDC61 chr19:46519651 5'GT 46519651 Upstream 46bp
chr6 30877258 30877258 1 + C A THCA 30877252 + 30877232 30877272 41 AGAACTGGGTGATGCGGATGCTCTTTCTGGAGCAGCCTTTG AGAACTGGGTGATGCGGATGCTCTTTATGGAGCAGCCTTTG < 41bp 1 0.384772862601576 1 0.0336402654647827 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2H4 ENSG00000213780 CDS Human protein_coding chr6:30877252 chr6:30877258 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_38842 0 0 0 0 2 GTF2H4 chr6:30877212 3'AG 30877212 Downstream 47bp
chr6 30877258 30877258 1 + C A THCA 30877252 + 30877232 30877272 41 AGAACTGGGTGATGCGGATGCTCTTTCTGGAGCAGCCTTTG AGAACTGGGTGATGCGGATGCTCTTTATGGAGCAGCCTTTG < 41bp 1 0.384772862601576 1 0.0336402654647827 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2H4 ENSG00000213780 CDS Human protein_coding chr6:30877252 chr6:30877258 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_38842 0 0 0 0 2 GTF2H4 chr6:30877316 5'GT 30877316 Upstream 59bp
chr10 103908243 103908243 1 + C T THCA 103908226 + 103908206 103908246 41 CATCCTCATCATCCAGTTCTCGAAGCCGCTCACGATCCCCA CATCCTCATCATCCAGTTCTCGAAGCCGCTCACGATCTCCA < 41bp 1 0.438487629755225 1 0.736812829971313 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103908226 chr10:103908243 synonymous SNV . 0 38 hm5C_associated_SNPs_38845 0 0 1 0 1 PPRC1 chr10:103908278 5'GT 103908278 Upstream 36bp
chr18 9182470 9182470 1 + A G THCA 9182456 + 9182436 9182476 41 CAAATCTGGGTTCACAAAACCAATTCAGAGTGAAAATTCTG CAAATCTGGGTTCACAAAACCAATTCAGAGTGAAGATTCTG < 41bp 1 0.0997253881378105 1 0.0444479286670685 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD12 ENSG00000101745 CDS Human processed_transcript chr18:9182456 chr18:9182470 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_38847 0 0 1 0 2 ANKRD12 chr18:9182380 3'AG 9182380 Downstream 91bp
chr18 9182470 9182470 1 + A G THCA 9182456 + 9182436 9182476 41 CAAATCTGGGTTCACAAAACCAATTCAGAGTGAAAATTCTG CAAATCTGGGTTCACAAAACCAATTCAGAGTGAAGATTCTG < 41bp 1 0.0997253881378105 1 0.0444479286670685 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD12 ENSG00000101745 CDS Human protein_coding chr18:9182456 chr18:9182470 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_38847 0 0 1 0 2 ANKRD12 chr18:9182517 5'GT 9182517 Upstream 48bp
chr6 33243782 33243782 1 + A G THCA 33243772 + 33243752 33243792 41 TGATCACCATTATGCAGAATCCACGCCAGTACAAGATCCCA TGATCACCATTATGCAGAATCCACGCCAGTGCAAGATCCCA < 41bp 1 0.203253240235643 1 0.0317802131175995 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243772 chr6:33243782 nonsynonymous SNV 0.994 4 31 hm5C_associated_SNPs_38848 0 0 1 2 2 RPS18 chr6:33243742 3'AG 33243742 Downstream 41bp
chr6 33243782 33243782 1 + A G THCA 33243772 + 33243752 33243792 41 TGATCACCATTATGCAGAATCCACGCCAGTACAAGATCCCA TGATCACCATTATGCAGAATCCACGCCAGTGCAAGATCCCA < 41bp 1 0.203253240235643 1 0.0317802131175995 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243772 chr6:33243782 nonsynonymous SNV 0.994 4 31 hm5C_associated_SNPs_38848 0 0 1 2 2 RPS18 chr6:33243843 5'GT 33243843 Upstream 62bp
chr6 33243782 33243782 1 + A G THCA 33243783 + 33243763 33243803 41 ATGCAGAATCCACGCCAGTACAAGATCCCAGACTGGTTCTT ATGCAGAATCCACGCCAGTGCAAGATCCCAGACTGGTTCTT < 41bp 1 0.774320462805559 1 0.230892360210419 experiment 0.451359074388882 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243783 chr6:33243782 nonsynonymous SNV 0.994 4 20 hm5C_associated_SNPs_38849 0 0 1 2 2 RPS18 chr6:33243742 3'AG 33243742 Downstream 41bp
chr6 33243782 33243782 1 + A G THCA 33243783 + 33243763 33243803 41 ATGCAGAATCCACGCCAGTACAAGATCCCAGACTGGTTCTT ATGCAGAATCCACGCCAGTGCAAGATCCCAGACTGGTTCTT < 41bp 1 0.774320462805559 1 0.230892360210419 experiment 0.451359074388882 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243783 chr6:33243782 nonsynonymous SNV 0.994 4 20 hm5C_associated_SNPs_38849 0 0 1 2 2 RPS18 chr6:33243843 5'GT 33243843 Upstream 62bp
chr2 233428968 233428968 1 + C A THCA 233428984 + 233428964 233429004 41 AGTTCTGGAGGTTTTATAGCCACATGGTACGTCCTGGGGAC AGTTATGGAGGTTTTATAGCCACATGGTACGTCCTGGGGAC < 41bp 1 0.759794416622233 1 0.759216666221619 experiment 0.480411166755534 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control EIF4E2 ENSG00000135930 CDS Human protein_coding chr2:233428984 chr2:233428968 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_38851 0 0 1 0 2 EIF4E2 chr2:233428957 3'AG 233428957 Downstream 12bp
chr2 233428968 233428968 1 + C A THCA 233428984 + 233428964 233429004 41 AGTTCTGGAGGTTTTATAGCCACATGGTACGTCCTGGGGAC AGTTATGGAGGTTTTATAGCCACATGGTACGTCCTGGGGAC < 41bp 1 0.759794416622233 1 0.759216666221619 experiment 0.480411166755534 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control EIF4E2 ENSG00000135930 CDS Human protein_coding chr2:233428984 chr2:233428968 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_38851 0 0 1 0 2 EIF4E2 chr2:233429061 5'GT 233429061 Upstream 94bp
chr17 30687706 30687706 1 + C A THCA 30687710 + 30687690 30687730 41 TCAGCCACAGCCTGTTCAACCTCAGCAAGGTTATATTCCTC TCAGCCACAGCCTGTTAAACCTCAGCAAGGTTATATTCCTC < 41bp 1 0.71073295371458 1 0.0717876255512238 experiment 0.578534092570839 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30687710 chr17:30687706 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_38852 0 0 1 1 1 ZNF207 chr17:30687784 5'GT 30687784 Upstream 79bp
chr7 129102860 129102860 1 + G A THCA 129102845 + 129102825 129102865 41 GAGACGCCATGTGAAATCCTCTACCAGGGAATGCTGTACAG GAGACGCCATGTGAAATCCTCTACCAGGGAATGCTATACAG < 41bp 1 0.332695417122013 1 0.161685049533844 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129102845 chr7:129102860 synonymous SNV . 0 36 hm5C_associated_SNPs_38853 0 0 1 0 2 STRIP2 chr7:129102807 3'AG 129102807 Downstream 54bp
chr7 129102860 129102860 1 + G A THCA 129102845 + 129102825 129102865 41 GAGACGCCATGTGAAATCCTCTACCAGGGAATGCTGTACAG GAGACGCCATGTGAAATCCTCTACCAGGGAATGCTATACAG < 41bp 1 0.332695417122013 1 0.161685049533844 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129102845 chr7:129102860 synonymous SNV . 0 36 hm5C_associated_SNPs_38853 0 0 1 0 2 STRIP2 chr7:129102881 5'GT 129102881 Upstream 22bp
chr8 104066176 104066176 1 + G A THCA 104066182 + 104066162 104066202 41 TTGTTCTTGATTCAGAGTATCTCGTCACATTACTGGTAGTA TTGTTCTTGATTCAAAGTATCTCGTCACATTACTGGTAGTA < 41bp 1 0.410229315846457 1 0.0582627952098846 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V1C1 ENSG00000155097 CDS Human protein_coding chr8:104066182 chr8:104066176 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_38854 0 0 1 0 2 ATP6V1C1 chr8:104066112 3'AG 104066112 Downstream 65bp
chr8 104066176 104066176 1 + G A THCA 104066182 + 104066162 104066202 41 TTGTTCTTGATTCAGAGTATCTCGTCACATTACTGGTAGTA TTGTTCTTGATTCAAAGTATCTCGTCACATTACTGGTAGTA < 41bp 1 0.410229315846457 1 0.0582627952098846 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V1C1 ENSG00000155097 CDS Human protein_coding chr8:104066182 chr8:104066176 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_38854 0 0 1 0 2 ATP6V1C1 chr8:104066210 5'GT 104066210 Upstream 35bp
chr17 28766044 28766044 1 + G A THCA 28766053 + 28766033 28766073 41 TGTATCCTAATGAATATTTTCCTCATGGAATAACAAATGGA TGTATCCTAATAAATATTTTCCTCATGGAATAACAAATGGA < 41bp 1 0.0852734810491036 1 0.256487131118774 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28766053 chr17:28766044 nonsynonymous SNV 0.999 3 12 hm5C_associated_SNPs_38857 0 0 1 0 2 CPD chr17:28765993 3'AG 28765993 Downstream 52bp
chr17 28766044 28766044 1 + G A THCA 28766053 + 28766033 28766073 41 TGTATCCTAATGAATATTTTCCTCATGGAATAACAAATGGA TGTATCCTAATAAATATTTTCCTCATGGAATAACAAATGGA < 41bp 1 0.0852734810491036 1 0.256487131118774 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28766053 chr17:28766044 nonsynonymous SNV 0.999 3 12 hm5C_associated_SNPs_38857 0 0 1 0 2 CPD chr17:28766095 5'GT 28766095 Upstream 52bp
chr17 28766046 28766046 1 + A T THCA 28766053 + 28766033 28766073 41 TGTATCCTAATGAATATTTTCCTCATGGAATAACAAATGGA TGTATCCTAATGATTATTTTCCTCATGGAATAACAAATGGA < 41bp 1 0.11649182324524 1 0.427544921636581 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28766053 chr17:28766046 nonsynonymous SNV 0.999 3 14 hm5C_associated_SNPs_38858 0 0 1 0 2 CPD chr17:28765993 3'AG 28765993 Downstream 54bp
chr17 28766046 28766046 1 + A T THCA 28766053 + 28766033 28766073 41 TGTATCCTAATGAATATTTTCCTCATGGAATAACAAATGGA TGTATCCTAATGATTATTTTCCTCATGGAATAACAAATGGA < 41bp 1 0.11649182324524 1 0.427544921636581 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28766053 chr17:28766046 nonsynonymous SNV 0.999 3 14 hm5C_associated_SNPs_38858 0 0 1 0 2 CPD chr17:28766095 5'GT 28766095 Upstream 50bp
chr7 128445518 128445518 1 + G T THCA 128445505 + 128445485 128445525 41 AGAAATGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGT AGAAATGGATTTCTTAGAGCCTGATCCTGAAATTCAGTTGT < 41bp 1 0.20330708133173 1 0.143092960119247 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445505 chr7:128445518 nonsynonymous SNV 0.946 0 34 hm5C_associated_SNPs_38859 0 0 1 0 1 CCDC136 chr7:128445578 5'GT 128445578 Upstream 61bp
chr7 128445518 128445518 1 + G T THCA 128445510 + 128445490 128445530 41 TGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGTTACGG TGGATTTCTTAGAGCCTGATCCTGAAATTCAGTTGTTACGG < 41bp 1 0.307363425584042 1 0.342115879058838 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445510 chr7:128445518 nonsynonymous SNV 0.946 0 29 hm5C_associated_SNPs_38860 0 0 1 0 1 CCDC136 chr7:128445578 5'GT 128445578 Upstream 61bp
chr2 46803742 46803742 1 + G C THCA 46803731 + 46803711 46803751 41 AGATGACCCCAAAACTTTAGCAAGACTGAATGATATGAAAG AGATGACCCCAAAACTTTAGCAAGACTGAATCATATGAAAG < 41bp 1 0.649301594447179 1 0.514913201332092 experiment 0.701396811105641 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHOQ ENSG00000119729 CDS Human protein_coding chr2:46803731 chr2:46803742 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_38862 0 0 0 0 2 RHOQ chr2:46803700 3'AG 46803700 Downstream 43bp
chr2 46803742 46803742 1 + G C THCA 46803731 + 46803711 46803751 41 AGATGACCCCAAAACTTTAGCAAGACTGAATGATATGAAAG AGATGACCCCAAAACTTTAGCAAGACTGAATCATATGAAAG < 41bp 1 0.649301594447179 1 0.514913201332092 experiment 0.701396811105641 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHOQ ENSG00000119729 CDS Human protein_coding chr2:46803731 chr2:46803742 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_38862 0 0 0 0 2 RHOQ chr2:46803795 5'GT 46803795 Upstream 54bp
chr19 13056748 13056748 1 + C T THCA 13056739 + 13056719 13056759 41 GTTGTGTGAGGATCCCGGGGCCGCCGCGTCGCTCGGGCCCC GTTGTGTGAGGATCCCGGGGCCGCCGCGTTGCTCGGGCCCC < 41bp 1 0.407136241341587 1 0.120392233133316 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RAD23A ENSG00000179262 UTR5 Human protein_coding chr19:13056739 chr19:13056748 . . 0 30 hm5C_associated_SNPs_38864 0 0 1 0 1 RAD23A chr19:13056834 5'GT 13056834 Upstream 87bp
chr1 228451875 228451875 1 + G T THCA 228451881 + 228451861 228451901 41 GTGCAGGCTGAGGCGGGGACCAGTGCCACGCTGAGCTGCGA GTGCAGGCTGAGGCTGGGACCAGTGCCACGCTGAGCTGCGA < 41bp 1 0.103231122325065 1 0.687167227268219 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228451881 chr1:228451875 synonymous SNV . 0 15 hm5C_associated_SNPs_38865 0 0 0 0 1 OBSCN chr1:228451817 3'AG 228451817 Downstream 59bp
chr7 892493 892493 1 + C A THCA 892492 + 892472 892512 41 CAATTTCTTTTCGTTCTTGCCCGTGTTGAACTGGGCAAGCA CAATTTCTTTTCGTTCTTGCCAGTGTTGAACTGGGCAAGCA < 41bp 1 0.491321418696133 1 0.239092826843262 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SUN1 ENSG00000164828 CDS Human protein_coding chr7:892492 chr7:892493 synonymous SNV . 0 22 hm5C_associated_SNPs_38867 0 0 1 0 3 SUN1 chr7:892447 3'AG 892447 Downstream 47bp
chr7 892493 892493 1 + C A THCA 892492 + 892472 892512 41 CAATTTCTTTTCGTTCTTGCCCGTGTTGAACTGGGCAAGCA CAATTTCTTTTCGTTCTTGCCAGTGTTGAACTGGGCAAGCA < 41bp 1 0.491321418696133 1 0.239092826843262 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SUN1 ENSG00000164828 CDS Human protein_coding chr7:892492 chr7:892493 synonymous SNV . 0 22 hm5C_associated_SNPs_38867 0 0 1 0 3 SUN1 chr7:892450 3'AG 892450 Downstream 44bp
chr7 892493 892493 1 + C A THCA 892492 + 892472 892512 41 CAATTTCTTTTCGTTCTTGCCCGTGTTGAACTGGGCAAGCA CAATTTCTTTTCGTTCTTGCCAGTGTTGAACTGGGCAAGCA < 41bp 1 0.491321418696133 1 0.239092826843262 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SUN1 ENSG00000164828 CDS Human protein_coding chr7:892492 chr7:892493 synonymous SNV . 0 22 hm5C_associated_SNPs_38867 0 0 1 0 3 SUN1 chr7:892589 5'GT 892589 Upstream 97bp
chr9 5656675 5656675 1 + C A THCA 5656689 + 5656669 5656709 41 TAGTACCATGATAGCTGTATCAGTAAGTAGATTTTACCGCT TAGTACAATGATAGCTGTATCAGTAAGTAGATTTTACCGCT < 41bp 1 0.456514960149377 1 0.741575956344604 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RIC1 ENSG00000107036 CDS Human protein_coding chr9:5656689 chr9:5656675 synonymous SNV . 0 7 hm5C_associated_SNPs_38868 0 0 1 0 2 RIC1 chr9:5656583 3'AG 5656583 Downstream 93bp
chr9 5656675 5656675 1 + C A THCA 5656689 + 5656669 5656709 41 TAGTACCATGATAGCTGTATCAGTAAGTAGATTTTACCGCT TAGTACAATGATAGCTGTATCAGTAAGTAGATTTTACCGCT < 41bp 1 0.456514960149377 1 0.741575956344604 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RIC1 ENSG00000107036 CDS Human protein_coding chr9:5656689 chr9:5656675 synonymous SNV . 0 7 hm5C_associated_SNPs_38868 0 0 1 0 2 RIC1 chr9:5656690 5'GT 5656690 Upstream 16bp
chrX 70347951 70347951 1 + G T THCA 70347944 + 70347924 70347964 41 TGCAATGCCCTTATGCACGTCTGTGTGGGGCACCATGATCC TGCAATGCCCTTATGCACGTCTGTGTGTGGCACCATGATCC < 41bp 1 0.243652849152328 1 0.32761013507843 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70347944 chrX:70347951 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_38869 0 0 1 0 1 MED12 chrX:70347970 5'GT 70347970 Upstream 20bp
chr6 18213961 18213961 1 + C A THCA 18213959 + 18213939 18213979 41 ACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAGGG ACTTTTTTGGTCACGTTCCTCCAAGTGCCAGCAAGCGAGGG < 41bp 1 0.40997443283848 1 0.888758420944214 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213959 chr6:18213961 synonymous SNV . 0 23 hm5C_associated_SNPs_38870 0 0 1 0 2 KDM1B chr6:18213887 3'AG 18213887 Downstream 75bp
chr6 18213961 18213961 1 + C A THCA 18213959 + 18213939 18213979 41 ACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAGGG ACTTTTTTGGTCACGTTCCTCCAAGTGCCAGCAAGCGAGGG < 41bp 1 0.40997443283848 1 0.888758420944214 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213959 chr6:18213961 synonymous SNV . 0 23 hm5C_associated_SNPs_38870 0 0 1 0 2 KDM1B chr6:18214012 5'GT 18214012 Upstream 52bp
chr12 6493845 6493845 1 + C A THCA 6493838 + 6493818 6493858 41 AGCACCGCATCTGCTGCTCCCGCTGCCCGCCAGGTGAGAGG AGCACCGCATCTGCTGCTCCCGCTGCCAGCCAGGTGAGAGG < 41bp 1 0.32909159823095 1 0.296728640794754 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LTBR ENSG00000111321 CDS Human protein_coding chr12:6493838 chr12:6493845 nonsynonymous SNV 0.997 2 28 hm5C_associated_SNPs_38871 0 0 1 0 2 LTBR chr12:6493754 3'AG 6493754 Downstream 92bp
chr12 6493845 6493845 1 + C A THCA 6493838 + 6493818 6493858 41 AGCACCGCATCTGCTGCTCCCGCTGCCCGCCAGGTGAGAGG AGCACCGCATCTGCTGCTCCCGCTGCCAGCCAGGTGAGAGG < 41bp 1 0.32909159823095 1 0.296728640794754 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LTBR ENSG00000111321 CDS Human protein_coding chr12:6493838 chr12:6493845 nonsynonymous SNV 0.997 2 28 hm5C_associated_SNPs_38871 0 0 1 0 2 LTBR chr12:6493850 5'GT 6493850 Upstream 6bp
chr2 36668427 36668427 1 + C A THCA 36668446 + 36668426 36668466 41 CCGCTGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATT CAGCTGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATT < 41bp 1 0.617393979039806 1 0.770872712135315 experiment 0.765212041920387 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36668446 chr2:36668427 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_38873 0 0 1 0 1 CRIM1 chr2:36668401 3'AG 36668401 Downstream 27bp
chr9 35733109 35733109 1 + C A THCA 35733112 + 35733092 35733132 41 CATGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTAT CATGACCACACCTACTCACTCCCACGGGAAACTGTCTCTAT < 41bp 1 0.184368610900871 1 0.155895680189133 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733112 chr9:35733109 synonymous SNV . 0 18 hm5C_associated_SNPs_38874 0 0 1 0 1 CREB3 chr9:35733140 5'GT 35733140 Upstream 32bp
chr9 35733109 35733109 1 + C A THCA 35733113 + 35733093 35733133 41 ATGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTATG ATGACCACACCTACTCACTCCCACGGGAAACTGTCTCTATG < 41bp 1 0.174215100115541 1 0.154773235321045 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733113 chr9:35733109 synonymous SNV . 0 17 hm5C_associated_SNPs_38875 0 0 1 0 1 CREB3 chr9:35733140 5'GT 35733140 Upstream 32bp
chr2 62934336 62934336 1 + G T THCA 62934334 + 62934314 62934354 41 TTGACTGATCATCATGGCTTCAGTTTGGAAGAGACTGCAGC TTGACTGATCATCATGGCTTCATTTTGGAAGAGACTGCAGC < 41bp 1 0.0315076606881325 1 0.0357182323932648 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EHBP1 ENSG00000115504 CDS Human protein_coding chr2:62934334 chr2:62934336 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_38876 0 0 1 0 1 EHBP1 chr2:62934430 5'GT 62934430 Upstream 95bp
chr5 54456042 54456042 1 + C T THCA 54456062 + 54456042 54456082 41 CCGCTAAAATGTTCCGGGCCCAGAGCAAAGGTATTTGCAGT TCGCTAAAATGTTCCGGGCCCAGAGCAAAGGTATTTGCAGT < 41bp 1 0.517232264013849 1 0.45128333568573 experiment 0.965535471972301 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPX8 ENSG00000164294 CDS Human protein_coding chr5:54456062 chr5:54456042 nonsynonymous SNV 0.989 0 1 hm5C_associated_SNPs_38877 0 0 1 0 1 GPX8 chr5:54456071 5'GT 54456071 Upstream 30bp
chr22 51044090 51044090 1 + C T THCA 51044075 + 51044055 51044095 41 AGGAGGACGACTTCTGGTTCCGTGGCTTCAACATGCGCACG AGGAGGACGACTTCTGGTTCCGTGGCTTCAACATGTGCACG < 41bp 1 0.335688377350402 1 0.412511676549911 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAPK8IP2 ENSG00000008735 CDS Human protein_coding chr22:51044075 chr22:51044090 nonsynonymous SNV 0.723 3 36 hm5C_associated_SNPs_38879 0 0 0 0 1 MAPK8IP2 chr22:51044162 5'GT 51044162 Upstream 73bp
chr4 57340538 57340538 1 + A C THCA 57340545 + 57340525 57340565 41 ACCAGGCCATGAAAATCCTACAAAAAGCTGAAGGTTGGAAG ACCAGGCCATGAACATCCTACAAAAAGCTGAAGGTTGGAAG < 41bp 1 0.552699898325172 1 0.321429371833801 experiment 0.894600203349656 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRP72 ENSG00000174780 CDS Human protein_coding chr4:57340545 chr4:57340538 nonsynonymous SNV 0.998 1 14 hm5C_associated_SNPs_38880 0 0 1 0 2 SRP72 chr4:57340446 3'AG 57340446 Downstream 93bp
chr4 57340538 57340538 1 + A C THCA 57340545 + 57340525 57340565 41 ACCAGGCCATGAAAATCCTACAAAAAGCTGAAGGTTGGAAG ACCAGGCCATGAACATCCTACAAAAAGCTGAAGGTTGGAAG < 41bp 1 0.552699898325172 1 0.321429371833801 experiment 0.894600203349656 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRP72 ENSG00000174780 CDS Human protein_coding chr4:57340545 chr4:57340538 nonsynonymous SNV 0.998 1 14 hm5C_associated_SNPs_38880 0 0 1 0 2 SRP72 chr4:57340557 5'GT 57340557 Upstream 20bp
chr20 18143067 18143067 1 + G A THCA 18143056 + 18143036 18143076 41 AAGGCGATGGAGTCATAGACCCAGGGATGGAGTACGTCCCA AAGGCGATGGAGTCATAGACCCAGGGATGGAATACGTCCCA < 41bp 1 0.711506549567492 1 0.799274265766144 experiment 0.576986900865016 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control KAT14 ENSG00000149474 CDS Human protein_coding chr20:18143056 chr20:18143067 synonymous SNV . 0 32 hm5C_associated_SNPs_38881 0 0 0 0 1 KAT14 chr20:18143021 3'AG 18143021 Downstream 47bp
chr1 180849246 180849246 1 + G A THCA 180849252 + 180849232 180849272 41 TCCGCCTGGAGAATGAACATCTGAATAACTGTGGTGAATTC TCCGCCTGGAGAATAAACATCTGAATAACTGTGGTGAATTC < 41bp 1 0.652181720440438 1 0.280246138572693 experiment 0.695636559119124 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control XPR1 ENSG00000143324 CDS Human protein_coding chr1:180849252 chr1:180849246 nonsynonymous SNV 0.993 4 15 hm5C_associated_SNPs_38882 0 0 1 0 1 XPR1 chr1:180849212 3'AG 180849212 Downstream 35bp
chrX 135106617 135106617 1 + G C THCA 135106613 + 135106593 135106633 41 TGGGTATTTGGTGGTGGCACCACTGCAATGCTGTCATGCTT TGGGTATTTGGTGGTGGCACCACTCCAATGCTGTCATGCTT < 41bp 1 0.123491308550724 1 0.793520569801331 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135106613 chrX:135106617 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_38883 0 0 1 0 1 SLC9A6 chrX:135106642 5'GT 135106642 Upstream 26bp
chr20 25198164 25198164 1 + C T THCA 25198155 + 25198135 25198175 41 CAGGGCACCCTGCAGGCCTCCCCACCCGGCTACCTGACGGC CAGGGCACCCTGCAGGCCTCCCCACCCGGTTACCTGACGGC < 41bp 1 0.100962772680432 1 0.146734446287155 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25198155 chr20:25198164 synonymous SNV . 0 30 hm5C_associated_SNPs_38884 0 0 1 0 2 ENTPD6 chr20:25198138 3'AG 25198138 Downstream 27bp
chr20 25198164 25198164 1 + C T THCA 25198155 + 25198135 25198175 41 CAGGGCACCCTGCAGGCCTCCCCACCCGGCTACCTGACGGC CAGGGCACCCTGCAGGCCTCCCCACCCGGTTACCTGACGGC < 41bp 1 0.100962772680432 1 0.146734446287155 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25198155 chr20:25198164 synonymous SNV . 0 30 hm5C_associated_SNPs_38884 0 0 1 0 2 ENTPD6 chr20:25198217 5'GT 25198217 Upstream 54bp
chr3 140140038 140140038 1 + G A THCA 140140054 + 140140034 140140074 41 CTACGACTGTGGACAGAAGCCCGCTGCTCAGGACACCCTGG CTACAACTGTGGACAGAAGCCCGCTGCTCAGGACACCCTGG < 41bp 1 0.22582695407984 1 0.288837790489197 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLSTN2 ENSG00000158258 CDS Human protein_coding chr3:140140054 chr3:140140038 nonsynonymous SNV 0.705 3 5 hm5C_associated_SNPs_38885 0 0 0 0 2 CLSTN2 chr3:140139967 3'AG 140139967 Downstream 72bp
chr3 140140038 140140038 1 + G A THCA 140140054 + 140140034 140140074 41 CTACGACTGTGGACAGAAGCCCGCTGCTCAGGACACCCTGG CTACAACTGTGGACAGAAGCCCGCTGCTCAGGACACCCTGG < 41bp 1 0.22582695407984 1 0.288837790489197 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLSTN2 ENSG00000158258 CDS Human protein_coding chr3:140140054 chr3:140140038 nonsynonymous SNV 0.705 3 5 hm5C_associated_SNPs_38885 0 0 0 0 2 CLSTN2 chr3:140140116 5'GT 140140116 Upstream 79bp
chr18 13056651 13056651 1 + A G THCA 13056650 + 13056630 13056670 41 TCCTGTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCAT TCCTGTGCCGTCTGTTGGTACGAACTGTGGAATTGAACCAT < 41bp 1 0.133357237116094 1 0.346521526575089 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056650 chr18:13056651 synonymous SNV . 0 22 hm5C_associated_SNPs_38886 0 0 1 0 1 CEP192 chr18:13056697 5'GT 13056697 Upstream 47bp
chr18 13056651 13056651 1 + A G THCA 13056654 + 13056634 13056674 41 GTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCATGGGA GTGCCGTCTGTTGGTACGAACTGTGGAATTGAACCATGGGA < 41bp 1 0.235013255688004 1 0.139818996191025 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056654 chr18:13056651 synonymous SNV . 0 18 hm5C_associated_SNPs_38887 0 0 1 0 1 CEP192 chr18:13056697 5'GT 13056697 Upstream 47bp
chr14 75190043 75190043 1 + C G THCA 75190025 + 75190005 75190045 41 CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTCTA CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTGTA < 41bp 1 0.696251664546681 1 0.156184643507004 experiment 0.607496670906638 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCF1 ENSG00000119616 CDS Human protein_coding chr14:75190025 chr14:75190043 nonsynonymous SNV 0.993 4 39 hm5C_associated_SNPs_38888 0 0 1 2 2 FCF1 chr14:75189975 3'AG 75189975 Downstream 69bp
chr14 75190043 75190043 1 + C G THCA 75190025 + 75190005 75190045 41 CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTCTA CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTGTA < 41bp 1 0.696251664546681 1 0.156184643507004 experiment 0.607496670906638 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCF1 ENSG00000119616 CDS Human protein_coding chr14:75190025 chr14:75190043 nonsynonymous SNV 0.993 4 39 hm5C_associated_SNPs_38888 0 0 1 2 2 FCF1 chr14:75190047 5'GT 75190047 Upstream 5bp
chr13 27216438 27216438 1 + C A THCA 27216436 + 27216416 27216456 41 AGTGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAG AGTGAAGAGGAACATTGAGCCCAGGCACTTGTGCCGGGGAG < 41bp 1 0.439681088626314 1 0.574100971221924 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216436 chr13:27216438 synonymous SNV . 0 23 hm5C_associated_SNPs_38896 0 0 1 0 1 WASF3 chr13:27216398 3'AG 27216398 Downstream 41bp
chr13 27216438 27216438 1 + C A THCA 27216437 + 27216417 27216457 41 GTGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGC GTGAAGAGGAACATTGAGCCCAGGCACTTGTGCCGGGGAGC < 41bp 1 0.465123639395356 1 0.750207424163818 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216437 chr13:27216438 synonymous SNV . 0 22 hm5C_associated_SNPs_38897 0 0 1 0 1 WASF3 chr13:27216398 3'AG 27216398 Downstream 41bp
chr13 27216438 27216438 1 + C A THCA 27216441 + 27216421 27216461 41 AGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCTCTG AGAGGAACATTGAGCCCAGGCACTTGTGCCGGGGAGCTCTG < 41bp 1 0.30998826463998 1 0.0748462378978729 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216441 chr13:27216438 synonymous SNV . 0 18 hm5C_associated_SNPs_38898 0 0 1 0 1 WASF3 chr13:27216398 3'AG 27216398 Downstream 41bp
chr13 27216438 27216438 1 + C A THCA 27216450 + 27216430 27216470 41 TTGAGCCCCGGCACTTGTGCCGGGGAGCTCTGCCTGAAGGG TTGAGCCCAGGCACTTGTGCCGGGGAGCTCTGCCTGAAGGG < 41bp 1 0.754218807960413 1 0.87858384847641 experiment 0.491562384079175 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216450 chr13:27216438 synonymous SNV . 0 9 hm5C_associated_SNPs_38899 0 0 1 0 1 WASF3 chr13:27216398 3'AG 27216398 Downstream 41bp
chr9 37429743 37429743 1 + C A THCA 37429725 + 37429705 37429745 41 AGACATGGACTCTCCTTGCTCTAGGCCAGGCCATTGCTCGG AGACATGGACTCTCCTTGCTCTAGGCCAGGCCATTGCTAGG < 41bp 1 0.769481100001653 1 0.934961438179016 experiment 0.461037799996694 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37429725 chr9:37429743 synonymous SNV . 0 39 hm5C_associated_SNPs_38901 0 0 1 0 2 GRHPR chr9:37429729 3'AG 37429729 Downstream 15bp
chr9 37429743 37429743 1 + C A THCA 37429725 + 37429705 37429745 41 AGACATGGACTCTCCTTGCTCTAGGCCAGGCCATTGCTCGG AGACATGGACTCTCCTTGCTCTAGGCCAGGCCATTGCTAGG < 41bp 1 0.769481100001653 1 0.934961438179016 experiment 0.461037799996694 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37429725 chr9:37429743 synonymous SNV . 0 39 hm5C_associated_SNPs_38901 0 0 1 0 2 GRHPR chr9:37429833 5'GT 37429833 Upstream 91bp
chr9 79996933 79996933 1 + G T THCA 79996920 + 79996900 79996940 41 AGACTTCTGAAGTGGAGAGTCTGCGACCTCCTCGGTTCTTC AGACTTCTGAAGTGGAGAGTCTGCGACCTCCTCTGTTCTTC < 41bp 1 0.456837402052805 1 0.568571746349335 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VPS13A ENSG00000197969 CDS Human protein_coding chr9:79996920 chr9:79996933 nonsynonymous SNV 0.993 2 34 hm5C_associated_SNPs_38902 0 0 1 0 2 VPS13A chr9:79996892 3'AG 79996892 Downstream 42bp
chr9 79996933 79996933 1 + G T THCA 79996920 + 79996900 79996940 41 AGACTTCTGAAGTGGAGAGTCTGCGACCTCCTCGGTTCTTC AGACTTCTGAAGTGGAGAGTCTGCGACCTCCTCTGTTCTTC < 41bp 1 0.456837402052805 1 0.568571746349335 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VPS13A ENSG00000197969 CDS Human protein_coding chr9:79996920 chr9:79996933 nonsynonymous SNV 0.993 2 34 hm5C_associated_SNPs_38902 0 0 1 0 2 VPS13A chr9:79997003 5'GT 79997003 Upstream 71bp
chr11 831585 831585 1 + G T THCA 831584 + 831564 831604 41 GGGACGCCTGCGAGGCCAGGCGGGCGGGCAGCAGCTGCAGG GGGACGCCTGCGAGGCCAGGCTGGCGGGCAGCAGCTGCAGG < 41bp 1 0.598300097173699 1 0.279889464378357 experiment 0.803399805652601 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:831584 chr11:831585 nonsynonymous SNV 0.007 0 22 hm5C_associated_SNPs_38903 0 0 1 0 1 CRACR2B chr11:831535 3'AG 831535 Downstream 51bp
chr17 73484957 73484957 1 + C A THCA 73484970 + 73484950 73484990 41 GCTTTTCCGTGTCCTTGAGACCCCTGTGATTGACAACATCA GCTTTTCAGTGTCCTTGAGACCCCTGTGATTGACAACATCA < 41bp 1 0.163718023829713 1 0.0467848181724548 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73484970 chr17:73484957 nonsynonymous SNV 0.988 2 8 hm5C_associated_SNPs_38904 0 0 0 0 1 TMEM94 chr17:73484991 5'GT 73484991 Upstream 35bp
chr21 45546831 45546831 1 + C A THCA 45546824 + 45546804 45546844 41 AAACCTGAGATCAGGGTGACCTCACTCCGCTTCTCTCCCAC AAACCTGAGATCAGGGTGACCTCACTCAGCTTCTCTCCCAC < 41bp 1 0.382506590958202 1 0.148713082075119 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45546824 chr21:45546831 nonsynonymous SNV 0.525 1 28 hm5C_associated_SNPs_38905 0 0 1 0 2 PWP2 chr21:45546781 3'AG 45546781 Downstream 51bp
chr21 45546831 45546831 1 + C A THCA 45546824 + 45546804 45546844 41 AAACCTGAGATCAGGGTGACCTCACTCCGCTTCTCTCCCAC AAACCTGAGATCAGGGTGACCTCACTCAGCTTCTCTCCCAC < 41bp 1 0.382506590958202 1 0.148713082075119 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45546824 chr21:45546831 nonsynonymous SNV 0.525 1 28 hm5C_associated_SNPs_38905 0 0 1 0 2 PWP2 chr21:45546846 5'GT 45546846 Upstream 16bp
chr19 19217123 19217123 1 + A G THCA 19217131 + 19217111 19217151 41 CGCACTGGCTGGAACGACAGCCGCTTCACTGACCTACCCCC CGCACTGGCTGGGACGACAGCCGCTTCACTGACCTACCCCC < 41bp 1 0.298823101345865 1 0.13551539182663 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC25A42 ENSG00000181035 CDS Human protein_coding chr19:19217131 chr19:19217123 synonymous SNV . 0 13 hm5C_associated_SNPs_38906 0 0 1 0 2 SLC25A42 chr19:19217078 3'AG 19217078 Downstream 46bp
chr19 19217123 19217123 1 + A G THCA 19217131 + 19217111 19217151 41 CGCACTGGCTGGAACGACAGCCGCTTCACTGACCTACCCCC CGCACTGGCTGGGACGACAGCCGCTTCACTGACCTACCCCC < 41bp 1 0.298823101345865 1 0.13551539182663 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC25A42 ENSG00000181035 CDS Human protein_coding chr19:19217131 chr19:19217123 synonymous SNV . 0 13 hm5C_associated_SNPs_38906 0 0 1 0 2 SLC25A42 chr19:19217194 5'GT 19217194 Upstream 72bp
chr5 132400700 132400700 1 + C T THCA 132400719 + 132400699 132400739 41 TCGTTCAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC TTGTTCAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC < 41bp 1 0.455104515098049 1 0.434033215045929 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132400719 chr5:132400700 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_38907 0 0 1 0 2 HSPA4 chr5:132400672 3'AG 132400672 Downstream 29bp
chr5 132400700 132400700 1 + C T THCA 132400719 + 132400699 132400739 41 TCGTTCAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC TTGTTCAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC < 41bp 1 0.455104515098049 1 0.434033215045929 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132400719 chr5:132400700 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_38907 0 0 1 0 2 HSPA4 chr5:132400729 5'GT 132400729 Upstream 30bp
chr16 14038683 14038683 1 + C A THCA 14038675 + 14038655 14038695 41 AGCATCTGCAGATGTTTCCACTGACACTCGGAAAGCCGGTG AGCATCTGCAGATGTTTCCACTGACACTAGGAAAGCCGGTG < 41bp 1 0.227764972542031 1 0.449984967708588 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ERCC4 ENSG00000175595 CDS Human protein_coding chr16:14038675 chr16:14038683 synonymous SNV . 0 29 hm5C_associated_SNPs_38926 0 0 0 0 1 ERCC4 chr16:14038692 5'GT 14038692 Upstream 10bp
chr17 38318284 38318284 1 + G A THCA 38318298 + 38318278 38318318 41 CAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATG CAAAGTAGGTAAAAAGGGCCCTAAGCATTTGGATGATGATG < 41bp 1 0.225063970435597 1 0.0674554705619812 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318298 chr17:38318284 synonymous SNV . 0 7 hm5C_associated_SNPs_38927 0 0 1 0 1 CASC3 chr17:38318255 3'AG 38318255 Downstream 30bp
chr17 38318284 38318284 1 + G A THCA 38318303 + 38318283 38318323 41 TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGAT TAGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGAT < 41bp 1 0.118964175573411 1 0.144172608852386 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318303 chr17:38318284 synonymous SNV . 0 2 hm5C_associated_SNPs_38928 0 0 1 0 1 CASC3 chr17:38318255 3'AG 38318255 Downstream 30bp
chr17 76167692 76167692 1 + G A THCA 76167712 + 76167692 76167732 41 GCAGCCATCACCTTCAGCTTCTTTTCCATCTTCTCCTGGGT ACAGCCATCACCTTCAGCTTCTTTTCCATCTTCTCCTGGGT < 41bp 1 0.0473730642336691 1 0.0306771099567413 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167712 chr17:76167692 nonsynonymous SNV 0.839 4 1 hm5C_associated_SNPs_38929 0 0 1 0 1 SYNGR2 chr17:76167730 5'GT 76167730 Upstream 39bp
chr11 831564 831564 1 + G A THCA 831584 + 831564 831604 41 GGGACGCCTGCGAGGCCAGGCGGGCGGGCAGCAGCTGCAGG AGGACGCCTGCGAGGCCAGGCGGGCGGGCAGCAGCTGCAGG < 41bp 1 0.655221245456246 1 0.757037699222565 experiment 0.689557509087507 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:831584 chr11:831564 nonsynonymous SNV 0.299 0 1 hm5C_associated_SNPs_38930 0 0 1 0 1 CRACR2B chr11:831535 3'AG 831535 Downstream 30bp
chr1 120286533 120286533 1 + G T THCA 120286513 + 120286493 120286533 41 TTTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTGCG TTTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTGCT < 41bp 1 0.165350043776873 1 0.232030689716339 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286513 chr1:120286533 nonsynonymous SNV 0.997 3 41 hm5C_associated_SNPs_38931 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 25bp
chr1 120286533 120286533 1 + G T THCA 120286514 + 120286494 120286534 41 TTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTGCGG TTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTGCTG < 41bp 1 0.448300640736089 1 0.187060207128525 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286514 chr1:120286533 nonsynonymous SNV 0.997 3 40 hm5C_associated_SNPs_38932 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 25bp
chr1 120286533 120286533 1 + G T THCA 120286518 + 120286498 120286538 41 TCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTGCGGCTGC TCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTGCTGCTGC < 41bp 1 0.667656801383117 1 0.914733409881592 experiment 0.664686397233767 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286518 chr1:120286533 nonsynonymous SNV 0.997 3 36 hm5C_associated_SNPs_38933 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 25bp
chr1 120286533 120286533 1 + G T THCA 120286535 + 120286515 120286555 41 TGGCAGAGGCAGGCGTGCGGCTGCTGTCCTACCAGACTTCA TGGCAGAGGCAGGCGTGCTGCTGCTGTCCTACCAGACTTCA < 41bp 1 0.633097195975526 1 0.598633706569672 experiment 0.733805608048948 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286535 chr1:120286533 nonsynonymous SNV 0.997 3 19 hm5C_associated_SNPs_38934 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 25bp
chr1 120286533 120286533 1 + G T THCA 120286542 + 120286522 120286562 41 GGCAGGCGTGCGGCTGCTGTCCTACCAGACTTCACTGGTGT GGCAGGCGTGCTGCTGCTGTCCTACCAGACTTCACTGGTGT < 41bp 1 0.0637607198805155 1 0.215826004743576 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286542 chr1:120286533 nonsynonymous SNV 0.997 3 12 hm5C_associated_SNPs_38935 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 25bp
chr1 120286533 120286533 1 + G T THCA 120286543 + 120286523 120286563 41 GCAGGCGTGCGGCTGCTGTCCTACCAGACTTCACTGGTGTC GCAGGCGTGCTGCTGCTGTCCTACCAGACTTCACTGGTGTC < 41bp 1 0.309630540336428 1 0.296985745429993 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286543 chr1:120286533 nonsynonymous SNV 0.997 3 11 hm5C_associated_SNPs_38936 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 25bp
chr1 120286533 120286533 1 + G T THCA 120286547 + 120286527 120286567 41 GCGTGCGGCTGCTGTCCTACCAGACTTCACTGGTGTCAGAT GCGTGCTGCTGCTGTCCTACCAGACTTCACTGGTGTCAGAT < 41bp 1 0.522094546702813 1 0.718738734722137 experiment 0.955810906594374 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286547 chr1:120286533 nonsynonymous SNV 0.997 3 7 hm5C_associated_SNPs_38937 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 25bp
chr1 120286533 120286533 1 + G T THCA 120286551 + 120286531 120286571 41 GCGGCTGCTGTCCTACCAGACTTCACTGGTGTCAGATGGGG GCTGCTGCTGTCCTACCAGACTTCACTGGTGTCAGATGGGG < 41bp 1 0.502266370465684 1 0.54152250289917 experiment 0.995467259068632 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286551 chr1:120286533 nonsynonymous SNV 0.997 3 3 hm5C_associated_SNPs_38938 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 25bp
chr17 37360844 37360844 1 + G A THCA 37360846 + 37360826 37360866 41 CCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCATCA CCGTGAAGAGCGCCTCCAAGCCAAGAAGGAGGAGATCATCA < 41bp 1 0.379960607136439 1 0.480041444301605 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360846 chr17:37360844 synonymous SNV . 0 19 hm5C_associated_SNPs_38939 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 67bp
chr17 37360844 37360844 1 + G A THCA 37360862 + 37360842 37360882 41 CAGGCCAAGAAGGAGGAGATCATCAAGACTTTATCCAAGGA CAAGCCAAGAAGGAGGAGATCATCAAGACTTTATCCAAGGA < 41bp 1 0.50563949506332 1 0.147246956825256 experiment 0.988721009873361 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360862 chr17:37360844 synonymous SNV . 0 3 hm5C_associated_SNPs_38940 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 67bp
chr11 65063436 65063436 1 + C A THCA 65063444 + 65063424 65063464 41 TCCTCATCATCCCGTCAGAGCTGAGGTACTTCGTGAAGGTA TCCTCATCATCCAGTCAGAGCTGAGGTACTTCGTGAAGGTA < 41bp 1 0.318729301114236 1 0.152889162302017 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control POLA2 ENSG00000014138 CDS Human protein_coding chr11:65063444 chr11:65063436 nonsynonymous SNV 0.327 4 13 hm5C_associated_SNPs_38941 0 0 1 0 1 POLA2 chr11:65063461 5'GT 65063461 Upstream 26bp
chr19 42373229 42373229 1 + C A THCA 42373215 + 42373195 42373235 41 CAGCCACTTCAGCCGAGGCTCCAAGAGTGTGGCCCGCCGGG CAGCCACTTCAGCCGAGGCTCCAAGAGTGTGGCCAGCCGGG < 41bp 1 0.231859776357773 1 0.18306577205658 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373215 chr19:42373229 nonsynonymous SNV 0.971 2 35 hm5C_associated_SNPs_38942 0 0 1 0 1 RPS19 chr19:42373284 5'GT 42373284 Upstream 56bp
chr19 42373229 42373229 1 + C A THCA 42373228 + 42373208 42373248 41 CGAGGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCT CGAGGCTCCAAGAGTGTGGCCAGCCGGGTCCTCCAAGCCCT < 41bp 1 0.524905336825527 1 0.108057767152786 experiment 0.950189326348947 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373228 chr19:42373229 nonsynonymous SNV 0.971 2 22 hm5C_associated_SNPs_38943 0 0 1 0 1 RPS19 chr19:42373284 5'GT 42373284 Upstream 56bp
chr19 42373229 42373229 1 + C A THCA 42373231 + 42373211 42373251 41 GGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCTGGA GGCTCCAAGAGTGTGGCCAGCCGGGTCCTCCAAGCCCTGGA < 41bp 1 0.640898358584811 1 0.629151046276093 experiment 0.718203282830377 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373231 chr19:42373229 nonsynonymous SNV 0.971 2 19 hm5C_associated_SNPs_38944 0 0 1 0 1 RPS19 chr19:42373284 5'GT 42373284 Upstream 56bp
chr19 42373229 42373229 1 + C A THCA 42373237 + 42373217 42373257 41 AAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCTGGAGGGGCT AAGAGTGTGGCCAGCCGGGTCCTCCAAGCCCTGGAGGGGCT < 41bp 1 0.0490418234917364 1 0.128535807132721 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373237 chr19:42373229 nonsynonymous SNV 0.971 2 13 hm5C_associated_SNPs_38945 0 0 1 0 1 RPS19 chr19:42373284 5'GT 42373284 Upstream 56bp
chr7 142460374 142460374 1 + A G THCA 142460354 + 142460334 142460374 41 TAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAACA TAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAACG < 41bp 1 0.783256222592592 1 0.637197613716125 experiment 0.433487554814816 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460354 chr7:142460374 nonsynonymous SNV 0.060 5 41 hm5C_associated_SNPs_38949 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 93bp
chr7 142460374 142460374 1 + A G THCA 142460354 + 142460334 142460374 41 TAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAACA TAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAACG < 41bp 1 0.783256222592592 1 0.637197613716125 experiment 0.433487554814816 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460354 chr7:142460374 nonsynonymous SNV 0.060 5 41 hm5C_associated_SNPs_38949 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 45bp
chr7 142460374 142460374 1 + A G THCA 142460366 + 142460346 142460386 41 CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG CTCCTACCCTGGAAAGATTACCAGCAACGTGTTCTGTGTGG < 41bp 1 0.170655340038131 1 0.113991230726242 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460366 chr7:142460374 nonsynonymous SNV 0.060 5 29 hm5C_associated_SNPs_38950 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 93bp
chr7 142460374 142460374 1 + A G THCA 142460366 + 142460346 142460386 41 CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG CTCCTACCCTGGAAAGATTACCAGCAACGTGTTCTGTGTGG < 41bp 1 0.170655340038131 1 0.113991230726242 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460366 chr7:142460374 nonsynonymous SNV 0.060 5 29 hm5C_associated_SNPs_38950 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 45bp
chr7 142460374 142460374 1 + A G THCA 142460367 + 142460347 142460387 41 TCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG TCCTACCCTGGAAAGATTACCAGCAACGTGTTCTGTGTGGG < 41bp 1 0.67014818152186 1 0.535700023174286 experiment 0.659703636956281 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460367 chr7:142460374 nonsynonymous SNV 0.060 5 28 hm5C_associated_SNPs_38951 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 93bp
chr7 142460374 142460374 1 + A G THCA 142460367 + 142460347 142460387 41 TCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG TCCTACCCTGGAAAGATTACCAGCAACGTGTTCTGTGTGGG < 41bp 1 0.67014818152186 1 0.535700023174286 experiment 0.659703636956281 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460367 chr7:142460374 nonsynonymous SNV 0.060 5 28 hm5C_associated_SNPs_38951 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 45bp
chr7 142460374 142460374 1 + A G THCA 142460370 + 142460350 142460390 41 TACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT TACCCTGGAAAGATTACCAGCAACGTGTTCTGTGTGGGCTT < 41bp 1 0.356943733605702 1 0.409237027168274 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460370 chr7:142460374 nonsynonymous SNV 0.060 5 25 hm5C_associated_SNPs_38952 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 93bp
chr7 142460374 142460374 1 + A G THCA 142460370 + 142460350 142460390 41 TACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT TACCCTGGAAAGATTACCAGCAACGTGTTCTGTGTGGGCTT < 41bp 1 0.356943733605702 1 0.409237027168274 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460370 chr7:142460374 nonsynonymous SNV 0.060 5 25 hm5C_associated_SNPs_38952 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 45bp
chr7 142460374 142460374 1 + A G THCA 142460373 + 142460353 142460393 41 CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT CCTGGAAAGATTACCAGCAACGTGTTCTGTGTGGGCTTCCT < 41bp 1 0.277616456870392 1 0.0824940204620361 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460373 chr7:142460374 nonsynonymous SNV 0.060 5 22 hm5C_associated_SNPs_38953 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 93bp
chr7 142460374 142460374 1 + A G THCA 142460373 + 142460353 142460393 41 CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT CCTGGAAAGATTACCAGCAACGTGTTCTGTGTGGGCTTCCT < 41bp 1 0.277616456870392 1 0.0824940204620361 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460373 chr7:142460374 nonsynonymous SNV 0.060 5 22 hm5C_associated_SNPs_38953 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 45bp
chr7 142460374 142460374 1 + A G THCA 142460379 + 142460359 142460399 41 AAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG AAGATTACCAGCAACGTGTTCTGTGTGGGCTTCCTTGAGGG < 41bp 1 0.345509325798488 1 0.260674327611923 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460379 chr7:142460374 nonsynonymous SNV 0.060 5 16 hm5C_associated_SNPs_38954 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 93bp
chr7 142460374 142460374 1 + A G THCA 142460379 + 142460359 142460399 41 AAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG AAGATTACCAGCAACGTGTTCTGTGTGGGCTTCCTTGAGGG < 41bp 1 0.345509325798488 1 0.260674327611923 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460379 chr7:142460374 nonsynonymous SNV 0.060 5 16 hm5C_associated_SNPs_38954 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 45bp
chr7 142460374 142460374 1 + A G THCA 142460388 + 142460368 142460408 41 AGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA AGCAACGTGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA < 41bp 1 0.118769075780963 1 0.110089659690857 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460388 chr7:142460374 nonsynonymous SNV 0.060 5 7 hm5C_associated_SNPs_38955 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 93bp
chr7 142460374 142460374 1 + A G THCA 142460388 + 142460368 142460408 41 AGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA AGCAACGTGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA < 41bp 1 0.118769075780963 1 0.110089659690857 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460388 chr7:142460374 nonsynonymous SNV 0.060 5 7 hm5C_associated_SNPs_38955 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 45bp
chr7 142460374 142460374 1 + A G THCA 142460391 + 142460371 142460411 41 AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC AACGTGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC < 41bp 1 0.0343921542764415 1 0.0844079852104187 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460391 chr7:142460374 nonsynonymous SNV 0.060 5 4 hm5C_associated_SNPs_38956 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 93bp
chr7 142460374 142460374 1 + A G THCA 142460391 + 142460371 142460411 41 AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC AACGTGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC < 41bp 1 0.0343921542764415 1 0.0844079852104187 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460391 chr7:142460374 nonsynonymous SNV 0.060 5 4 hm5C_associated_SNPs_38956 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 45bp
chr7 142460374 142460374 1 + A G THCA 142460392 + 142460372 142460412 41 ACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA ACGTGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA < 41bp 1 0.582975528190895 1 0.398642778396606 experiment 0.83404894361821 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460392 chr7:142460374 nonsynonymous SNV 0.060 5 3 hm5C_associated_SNPs_38957 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 93bp
chr7 142460374 142460374 1 + A G THCA 142460392 + 142460372 142460412 41 ACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA ACGTGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA < 41bp 1 0.582975528190895 1 0.398642778396606 experiment 0.83404894361821 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460392 chr7:142460374 nonsynonymous SNV 0.060 5 3 hm5C_associated_SNPs_38957 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 45bp
chr6 32134709 32134709 1 + G A THCA 32134701 + 32134681 32134721 41 CCTCAGCCATCTGCGCCAAGCCTTGCCTGAACGGAGGCGTC CCTCAGCCATCTGCGCCAAGCCTTGCCTAAACGGAGGCGTC < 41bp 1 0.0548343131209463 1 0.0493583381175995 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134701 chr6:32134709 synonymous SNV . 0 29 hm5C_associated_SNPs_38958 0 0 1 0 2 EGFL8 chr6:32134687 3'AG 32134687 Downstream 23bp
chr6 32134709 32134709 1 + G A THCA 32134701 + 32134681 32134721 41 CCTCAGCCATCTGCGCCAAGCCTTGCCTGAACGGAGGCGTC CCTCAGCCATCTGCGCCAAGCCTTGCCTAAACGGAGGCGTC < 41bp 1 0.0548343131209463 1 0.0493583381175995 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134701 chr6:32134709 synonymous SNV . 0 29 hm5C_associated_SNPs_38958 0 0 1 0 2 EGFL8 chr6:32134782 5'GT 32134782 Upstream 74bp
chr6 32134709 32134709 1 + G A THCA 32134702 + 32134682 32134722 41 CTCAGCCATCTGCGCCAAGCCTTGCCTGAACGGAGGCGTCT CTCAGCCATCTGCGCCAAGCCTTGCCTAAACGGAGGCGTCT < 41bp 1 0.195635745102084 1 0.0839748084545135 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134702 chr6:32134709 synonymous SNV . 0 28 hm5C_associated_SNPs_38959 0 0 1 0 2 EGFL8 chr6:32134687 3'AG 32134687 Downstream 23bp
chr6 32134709 32134709 1 + G A THCA 32134702 + 32134682 32134722 41 CTCAGCCATCTGCGCCAAGCCTTGCCTGAACGGAGGCGTCT CTCAGCCATCTGCGCCAAGCCTTGCCTAAACGGAGGCGTCT < 41bp 1 0.195635745102084 1 0.0839748084545135 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134702 chr6:32134709 synonymous SNV . 0 28 hm5C_associated_SNPs_38959 0 0 1 0 2 EGFL8 chr6:32134782 5'GT 32134782 Upstream 74bp
chr19 17887069 17887069 1 + G T THYM 17887060 + 17887040 17887080 41 CCCACTTTGTCCACAGGGCACCATGAAACGCCATTCTTCAC CCCACTTTGTCCACAGGGCACCATGAAACTCCATTCTTCAC < 41bp 1 0.0554993991516562 1 0.0338121056556702 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17887060 chr19:17887069 nonsynonymous SNV 0.996 2 30 hm5C_associated_SNPs_38961 0 0 1 0 2 FCHO1 chr19:17887056 3'AG 17887056 Downstream 14bp
chr19 17887069 17887069 1 + G T THYM 17887060 + 17887040 17887080 41 CCCACTTTGTCCACAGGGCACCATGAAACGCCATTCTTCAC CCCACTTTGTCCACAGGGCACCATGAAACTCCATTCTTCAC < 41bp 1 0.0554993991516562 1 0.0338121056556702 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17887060 chr19:17887069 nonsynonymous SNV 0.996 2 30 hm5C_associated_SNPs_38961 0 0 1 0 2 FCHO1 chr19:17887080 5'GT 17887080 Upstream 12bp
chr15 73996773 73996773 1 + C T THYM 73996758 + 73996738 73996778 41 GCGAATGGCACCTACAGCTGCCTGGTGCGCAACCCCGTGCT GCGAATGGCACCTACAGCTGCCTGGTGCGCAACCCTGTGCT < 41bp 1 0.197728083297563 1 0.149650871753693 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD276 ENSG00000103855 CDS Human protein_coding chr15:73996758 chr15:73996773 synonymous SNV . 0 36 hm5C_associated_SNPs_38962 0 0 0 0 1 CD276 chr15:73996813 5'GT 73996813 Upstream 41bp
chr19 58758153 58758153 1 + C T THYM 58758154 + 58758134 58758174 41 GCAGGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCT GCAGGGCAGAGCAGGAGGCTCCCCGAGGTAAGAGCAGACCT < 41bp 1 0.507226173068039 1 0.44049260020256 experiment 0.985547653863922 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human other chr19:58758154 chr19:58758153 nonsynonymous SNV 0.039 0 20 hm5C_associated_SNPs_38963 0 0 1 0 3 ZNF544 chr19:58758077 3'AG 58758077 Downstream 77bp
chr19 58758153 58758153 1 + C T THYM 58758154 + 58758134 58758174 41 GCAGGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCT GCAGGGCAGAGCAGGAGGCTCCCCGAGGTAAGAGCAGACCT < 41bp 1 0.507226173068039 1 0.44049260020256 experiment 0.985547653863922 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58758154 chr19:58758153 nonsynonymous SNV 0.039 0 20 hm5C_associated_SNPs_38963 0 0 1 0 3 ZNF544 chr19:58758112 3'AG 58758112 Downstream 42bp
chr19 58758153 58758153 1 + C T THYM 58758154 + 58758134 58758174 41 GCAGGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCT GCAGGGCAGAGCAGGAGGCTCCCCGAGGTAAGAGCAGACCT < 41bp 1 0.507226173068039 1 0.44049260020256 experiment 0.985547653863922 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58758154 chr19:58758153 nonsynonymous SNV 0.039 0 20 hm5C_associated_SNPs_38963 0 0 1 0 3 ZNF544 chr19:58758160 5'GT 58758160 Upstream 8bp
chr19 58758153 58758153 1 + C T THYM 58758156 + 58758136 58758176 41 AGGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCTTG AGGGCAGAGCAGGAGGCTCCCCGAGGTAAGAGCAGACCTTG < 41bp 1 0.661915133057184 1 0.780479669570923 experiment 0.676169733885633 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human other chr19:58758156 chr19:58758153 nonsynonymous SNV 0.039 0 18 hm5C_associated_SNPs_38964 0 0 1 0 3 ZNF544 chr19:58758077 3'AG 58758077 Downstream 77bp
chr19 58758153 58758153 1 + C T THYM 58758156 + 58758136 58758176 41 AGGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCTTG AGGGCAGAGCAGGAGGCTCCCCGAGGTAAGAGCAGACCTTG < 41bp 1 0.661915133057184 1 0.780479669570923 experiment 0.676169733885633 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58758156 chr19:58758153 nonsynonymous SNV 0.039 0 18 hm5C_associated_SNPs_38964 0 0 1 0 3 ZNF544 chr19:58758112 3'AG 58758112 Downstream 42bp
chr19 58758153 58758153 1 + C T THYM 58758156 + 58758136 58758176 41 AGGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCTTG AGGGCAGAGCAGGAGGCTCCCCGAGGTAAGAGCAGACCTTG < 41bp 1 0.661915133057184 1 0.780479669570923 experiment 0.676169733885633 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58758156 chr19:58758153 nonsynonymous SNV 0.039 0 18 hm5C_associated_SNPs_38964 0 0 1 0 3 ZNF544 chr19:58758160 5'GT 58758160 Upstream 8bp
chr10 75871847 75871847 1 + G T THYM 75871841 + 75871821 75871861 41 TGGCCGCGGCTCAGTCCTTGCATCGGGAAGCTACCAAGTGG TGGCCGCGGCTCAGTCCTTGCATCGGTAAGCTACCAAGTGG < 41bp 1 0.407896640558421 1 0.205536723136902 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75871841 chr10:75871847 stopgain 1.000 1 27 hm5C_associated_SNPs_38965 0 0 1 0 1 VCL chr10:75871870 5'GT 75871870 Upstream 24bp
chrX 48417377 48417377 1 + G A THYM 48417383 + 48417363 48417403 41 CATCACTGACGACTGCCGCCCTGCCCTTTACACAGTCCATC CATCACTGACGACTACCGCCCTGCCCTTTACACAGTCCATC < 41bp 1 0.177782809639994 1 0.0201200246810913 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48417383 chrX:48417377 nonsynonymous SNV 0.981 1 15 hm5C_associated_SNPs_38966 0 0 1 0 2 TBC1D25 chrX:48417285 3'AG 48417285 Downstream 93bp
chrX 48417377 48417377 1 + G A THYM 48417383 + 48417363 48417403 41 CATCACTGACGACTGCCGCCCTGCCCTTTACACAGTCCATC CATCACTGACGACTACCGCCCTGCCCTTTACACAGTCCATC < 41bp 1 0.177782809639994 1 0.0201200246810913 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48417383 chrX:48417377 nonsynonymous SNV 0.981 1 15 hm5C_associated_SNPs_38966 0 0 1 0 2 TBC1D25 chrX:48417412 5'GT 48417412 Upstream 36bp
chr17 73814808 73814808 1 + C T THYM 73814827 + 73814807 73814847 41 CCTAGCCCAGTGGGCACCAGCAGCGTCCCCGGCATGAATGC CTTAGCCCAGTGGGCACCAGCAGCGTCCCCGGCATGAATGC < 41bp 1 0.716533259016475 1 0.362983345985413 experiment 0.566933481967051 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73814827 chr17:73814808 nonsynonymous SNV 0.999 3 2 hm5C_associated_SNPs_38967 0 0 1 0 2 UNK chr17:73814723 3'AG 73814723 Downstream 86bp
chr17 73814808 73814808 1 + C T THYM 73814827 + 73814807 73814847 41 CCTAGCCCAGTGGGCACCAGCAGCGTCCCCGGCATGAATGC CTTAGCCCAGTGGGCACCAGCAGCGTCCCCGGCATGAATGC < 41bp 1 0.716533259016475 1 0.362983345985413 experiment 0.566933481967051 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73814827 chr17:73814808 nonsynonymous SNV 0.999 3 2 hm5C_associated_SNPs_38967 0 0 1 0 2 UNK chr17:73814897 5'GT 73814897 Upstream 90bp
chr1 150297442 150297442 1 + G T THYM 150297437 + 150297417 150297457 41 GGGAGCTGGATGAGCTGAAACCATGGATAGAGAAGACAGTG GGGAGCTGGATGAGCTGAAACCATGTATAGAGAAGACAGTG < 41bp 1 0.315069739685061 1 0.159809052944183 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150297437 chr1:150297442 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_38969 0 0 1 0 2 PRPF3 chr1:150297353 3'AG 150297353 Downstream 90bp
chr1 150297442 150297442 1 + G T THYM 150297437 + 150297417 150297457 41 GGGAGCTGGATGAGCTGAAACCATGGATAGAGAAGACAGTG GGGAGCTGGATGAGCTGAAACCATGTATAGAGAAGACAGTG < 41bp 1 0.315069739685061 1 0.159809052944183 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150297437 chr1:150297442 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_38969 0 0 1 0 2 PRPF3 chr1:150297416 3'AG 150297416 Downstream 27bp
chr1 168014221 168014221 1 + G T THYM 168014224 + 168014204 168014244 41 TTGATCGCTCTTGTGGGGTTCCAGAAGAATCTGCTTCATCT TTGATCGCTCTTGTGGGTTTCCAGAAGAATCTGCTTCATCT < 41bp 1 0.515197338061415 1 0.696455001831055 experiment 0.96960532387717 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DCAF6 ENSG00000143164 CDS Human protein_coding chr1:168014224 chr1:168014221 nonsynonymous SNV 0.965 1 18 hm5C_associated_SNPs_38970 0 0 1 0 1 DCAF6 chr1:168014138 3'AG 168014138 Downstream 84bp
chr17 79414094 79414094 1 + G T THYM 79414114 + 79414094 79414134 41 GGCCTGGGCTTCTCCCTACCCTCAGACGTGCACTCTTCTAA TGCCTGGGCTTCTCCCTACCCTCAGACGTGCACTCTTCTAA < 41bp 1 0.294486728680873 1 0.520003080368042 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79414114 chr17:79414094 nonsynonymous SNV 0.000 0 1 hm5C_associated_SNPs_38971 0 0 1 0 1 BAHCC1 chr17:79414062 3'AG 79414062 Downstream 33bp
chr11 61488195 61488195 1 + C T THYM 61488204 + 61488184 61488224 41 GGTCTATAACCCGCACGAGGCCTGCTCCCTGAACCTGGTGG GGTCTATAACCTGCACGAGGCCTGCTCCCTGAACCTGGTGG < 41bp 1 0.0401930970356545 1 0.0167202055454254 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61488204 chr11:61488195 nonsynonymous SNV 0.949 1 12 hm5C_associated_SNPs_38972 0 0 1 0 1 DAGLA chr11:61488151 3'AG 61488151 Downstream 45bp
chr19 50339175 50339175 1 + G T THYM 50339162 + 50339142 50339182 41 TCGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCC TCGGCCCCAGAACCCTGGGGCCAACCCTCAGCTTCGAAGCC < 41bp 1 0.016946517223324 1 0.0293571650981903 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339162 chr19:50339175 synonymous SNV 0.992 0 34 hm5C_associated_SNPs_38973 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 28bp
chr19 50339175 50339175 1 + G T THYM 50339163 + 50339143 50339183 41 CGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCCT CGGCCCCAGAACCCTGGGGCCAACCCTCAGCTTCGAAGCCT < 41bp 1 0.121937133283748 1 0.0454345345497131 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339163 chr19:50339175 synonymous SNV 0.992 0 33 hm5C_associated_SNPs_38974 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 28bp
chr2 173352764 173352764 1 + G T THYM 173352763 + 173352743 173352783 41 TGAACTGCTTTTATCGGTCTCGGGGTAAGTGTTTGTGTTTA TGAACTGCTTTTATCGGTCTCTGGGTAAGTGTTTGTGTTTA < 41bp 1 0.628844875652239 1 0.720859706401825 experiment 0.742310248695522 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173352763 chr2:173352764 synonymous SNV . 0 22 hm5C_associated_SNPs_38975 0 0 1 0 3 ITGA6 chr2:173352689 3'AG 173352689 Downstream 76bp
chr2 173352764 173352764 1 + G T THYM 173352763 + 173352743 173352783 41 TGAACTGCTTTTATCGGTCTCGGGGTAAGTGTTTGTGTTTA TGAACTGCTTTTATCGGTCTCTGGGTAAGTGTTTGTGTTTA < 41bp 1 0.628844875652239 1 0.720859706401825 experiment 0.742310248695522 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173352763 chr2:173352764 synonymous SNV . 0 22 hm5C_associated_SNPs_38975 0 0 1 0 3 ITGA6 chr2:173352766 5'GT 173352766 Upstream 3bp
chr2 173352764 173352764 1 + G T THYM 173352763 + 173352743 173352783 41 TGAACTGCTTTTATCGGTCTCGGGGTAAGTGTTTGTGTTTA TGAACTGCTTTTATCGGTCTCTGGGTAAGTGTTTGTGTTTA < 41bp 1 0.628844875652239 1 0.720859706401825 experiment 0.742310248695522 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173352763 chr2:173352764 synonymous SNV . 0 22 hm5C_associated_SNPs_38975 0 0 1 0 3 ITGA6 chr2:173352854 5'GT 173352854 Upstream 91bp
chr4 183601746 183601746 1 + T C THYM 183601733 + 183601713 183601753 41 TGTAGTGGCAACGGGCAGTACTCCAAGGGCCGCTGCCTGTG TGTAGTGGCAACGGGCAGTACTCCAAGGGCCGCCGCCTGTG < 41bp 1 0.797701247996779 1 0.986995100975037 experiment 0.404597504006443 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|28418038;GSE74771;RNA-BisSeq;293T;Control TENM3 ENSG00000218336 CDS Human protein_coding chr4:183601733 chr4:183601746 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_38976 0 0 1 0 1 TENM3 chr4:183601696 3'AG 183601696 Downstream 51bp
chr6 7579946 7579946 1 + A T THYM 7579952 + 7579932 7579972 41 AGATTGAAAGGTTGAGGGTTCTACTGCAGGAAGAAGGCACC AGATTGAAAGGTTGTGGGTTCTACTGCAGGAAGAAGGCACC < 41bp 1 0.204124383572623 1 0.296946465969086 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7579952 chr6:7579946 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_38977 0 0 1 0 1 DSP chr6:7580005 5'GT 7580005 Upstream 60bp
chr7 150817216 150817216 1 + G T THYM 150817203 + 150817183 150817223 41 CCCCCACACCCATCCGAAAGCAGTCCAAGCGGCGCTCCAAC CCCCCACACCCATCCGAAAGCAGTCCAAGCGGCTCTCCAAC < 41bp 1 0.13555825250651 1 0.859744012355804 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150817203 chr7:150817216 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_38979 0 0 1 0 1 AGAP3 chr7:150817232 5'GT 150817232 Upstream 17bp
chr1 10231345 10231345 1 + G T THYM 10231351 + 10231331 10231371 41 GATATTTACTTACAGCTGGACTGTGCTCGGTTCGCGAAAGC GATATTTACTTACATCTGGACTGTGCTCGGTTCGCGAAAGC < 41bp 1 0.227663848847563 1 0.107023864984512 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10231351 chr1:10231345 nonsynonymous SNV 0.995 1 15 hm5C_associated_SNPs_38981 0 0 1 1 1 UBE4B chr1:10231387 5'GT 10231387 Upstream 43bp
chr3 39126157 39126157 1 + G A THYM 39126143 + 39126123 39126163 41 TTTCTTTTGATAGATGTTAACTATTACTTTGGATGAAAGTG TTTCTTTTGATAGATGTTAACTATTACTTTGGATAAAAGTG < 41bp 1 0.0952188238910857 1 0.104188770055771 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39126143 chr3:39126157 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_38982 0 0 1 0 2 WDR48 chr3:39126136 3'AG 39126136 Downstream 22bp
chr3 39126157 39126157 1 + G A THYM 39126143 + 39126123 39126163 41 TTTCTTTTGATAGATGTTAACTATTACTTTGGATGAAAGTG TTTCTTTTGATAGATGTTAACTATTACTTTGGATAAAAGTG < 41bp 1 0.0952188238910857 1 0.104188770055771 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39126143 chr3:39126157 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_38982 0 0 1 0 2 WDR48 chr3:39126232 5'GT 39126232 Upstream 76bp
chr8 21851902 21851902 1 + T C THYM 21851912 + 21851892 21851932 41 GTAAGAGACCTGAGAGGGATCGCTTTCGCTTTCAATGCCAA GTAAGAGACCCGAGAGGGATCGCTTTCGCTTTCAATGCCAA < 41bp 1 0.22407279406258 1 0.137778371572495 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21851912 chr8:21851902 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_38983 0 0 1 0 2 XPO7 chr8:21851874 3'AG 21851874 Downstream 29bp
chr8 21851902 21851902 1 + T C THYM 21851912 + 21851892 21851932 41 GTAAGAGACCTGAGAGGGATCGCTTTCGCTTTCAATGCCAA GTAAGAGACCCGAGAGGGATCGCTTTCGCTTTCAATGCCAA < 41bp 1 0.22407279406258 1 0.137778371572495 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21851912 chr8:21851902 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_38983 0 0 1 0 2 XPO7 chr8:21851962 5'GT 21851962 Upstream 61bp
chr19 11141493 11141493 1 + G A THYM 11141506 + 11141486 11141526 41 AGCACCCGGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGGC AGCACCCAGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGGC < 41bp 1 0.434340924985639 1 0.586839556694031 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141506 chr19:11141493 nonsynonymous SNV 0.918 4 8 hm5C_associated_SNPs_38984 0 0 1 0 2 SMARCA4 chr19:11141406 3'AG 11141406 Downstream 88bp
chr19 11141493 11141493 1 + G A THYM 11141506 + 11141486 11141526 41 AGCACCCGGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGGC AGCACCCAGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGGC < 41bp 1 0.434340924985639 1 0.586839556694031 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141506 chr19:11141493 nonsynonymous SNV 0.918 4 8 hm5C_associated_SNPs_38984 0 0 1 0 2 SMARCA4 chr19:11141569 5'GT 11141569 Upstream 77bp
chr17 48746581 48746581 1 + C T THYM 48746567 + 48746547 48746587 41 CCTGTGGGCTGTGGGAAGTCCTCCCTGGTGTCTGCCCTGCT CCTGTGGGCTGTGGGAAGTCCTCCCTGGTGTCTGTCCTGCT < 41bp 1 0.351331634701047 1 0.859007596969604 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48746567 chr17:48746581 nonsynonymous SNV 0.997 5 35 hm5C_associated_SNPs_38985 0 0 1 0 2 ABCC3 chr17:48746501 3'AG 48746501 Downstream 81bp
chr17 48746581 48746581 1 + C T THYM 48746567 + 48746547 48746587 41 CCTGTGGGCTGTGGGAAGTCCTCCCTGGTGTCTGCCCTGCT CCTGTGGGCTGTGGGAAGTCCTCCCTGGTGTCTGTCCTGCT < 41bp 1 0.351331634701047 1 0.859007596969604 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48746567 chr17:48746581 nonsynonymous SNV 0.997 5 35 hm5C_associated_SNPs_38985 0 0 1 0 2 ABCC3 chr17:48746627 5'GT 48746627 Upstream 47bp
chr11 988600 988600 1 + G A THYM 988594 + 988574 988614 41 GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGCGACCGC GGCAGCGGGCCGTGGACCTCCTCTACACCATGTGCGACCGC < 41bp 1 0.707956294257772 1 0.529295742511749 experiment 0.584087411484456 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:988594 chr11:988600 nonsynonymous SNV 0.992 4 27 hm5C_associated_SNPs_38986 0 0 1 0 2 AP2A2 chr11:988552 3'AG 988552 Downstream 49bp
chr11 988600 988600 1 + G A THYM 988594 + 988574 988614 41 GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGCGACCGC GGCAGCGGGCCGTGGACCTCCTCTACACCATGTGCGACCGC < 41bp 1 0.707956294257772 1 0.529295742511749 experiment 0.584087411484456 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:988594 chr11:988600 nonsynonymous SNV 0.992 4 27 hm5C_associated_SNPs_38986 0 0 1 0 2 AP2A2 chr11:988689 5'GT 988689 Upstream 90bp
chr22 44379823 44379823 1 + G T THYM 44379837 + 44379817 44379857 41 TACCTTGGGGGACCCACAAGCATCCGCGGATTCAGCATGCA TACCTTTGGGGACCCACAAGCATCCGCGGATTCAGCATGCA < 41bp 1 0.204078801337514 1 0.375349313020706 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44379837 chr22:44379823 nonsynonymous SNV 0.024 4 7 hm5C_associated_SNPs_38987 0 0 1 0 2 SAMM50 chr22:44379813 3'AG 44379813 Downstream 11bp
chr22 44379823 44379823 1 + G T THYM 44379837 + 44379817 44379857 41 TACCTTGGGGGACCCACAAGCATCCGCGGATTCAGCATGCA TACCTTTGGGGACCCACAAGCATCCGCGGATTCAGCATGCA < 41bp 1 0.204078801337514 1 0.375349313020706 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44379837 chr22:44379823 nonsynonymous SNV 0.024 4 7 hm5C_associated_SNPs_38987 0 0 1 0 2 SAMM50 chr22:44379880 5'GT 44379880 Upstream 58bp
chr11 47600859 47600859 1 + C T THYM 47600875 + 47600855 47600895 41 GAGGCGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATG GAGGTGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATG < 41bp 1 0.0851340429118119 1 0.126849859952927 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600875 chr11:47600859 nonsynonymous SNV 0.824 1 5 hm5C_associated_SNPs_38988 0 0 1 0 2 NDUFS3 chr11:47600821 3'AG 47600821 Downstream 39bp
chr11 47600859 47600859 1 + C T THYM 47600875 + 47600855 47600895 41 GAGGCGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATG GAGGTGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATG < 41bp 1 0.0851340429118119 1 0.126849859952927 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600875 chr11:47600859 nonsynonymous SNV 0.824 1 5 hm5C_associated_SNPs_38988 0 0 1 0 2 NDUFS3 chr11:47600886 5'GT 47600886 Upstream 28bp
chr11 47600859 47600859 1 + C T THYM 47600876 + 47600856 47600896 41 AGGCGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATGT AGGTGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATGT < 41bp 1 0.79472571620742 1 0.307494342327118 experiment 0.410548567585159 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600876 chr11:47600859 nonsynonymous SNV 0.824 1 4 hm5C_associated_SNPs_38989 0 0 1 0 2 NDUFS3 chr11:47600821 3'AG 47600821 Downstream 39bp
chr11 47600859 47600859 1 + C T THYM 47600876 + 47600856 47600896 41 AGGCGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATGT AGGTGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATGT < 41bp 1 0.79472571620742 1 0.307494342327118 experiment 0.410548567585159 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600876 chr11:47600859 nonsynonymous SNV 0.824 1 4 hm5C_associated_SNPs_38989 0 0 1 0 2 NDUFS3 chr11:47600886 5'GT 47600886 Upstream 28bp
chr17 43214063 43214063 1 + G T THYM 43214071 + 43214051 43214091 41 GCCCCCAGGGACGCCTGGAACAGTCTGGGCAAGATGAGCAG GCCCCCAGGGACTCCTGGAACAGTCTGGGCAAGATGAGCAG < 41bp 1 0.554504719184913 1 0.237606257200241 experiment 0.890990561630174 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43214071 chr17:43214063 nonsynonymous SNV 0.986 4 13 hm5C_associated_SNPs_38990 0 0 1 0 2 ACBD4 chr17:43214059 3'AG 43214059 Downstream 5bp
chr17 43214063 43214063 1 + G T THYM 43214071 + 43214051 43214091 41 GCCCCCAGGGACGCCTGGAACAGTCTGGGCAAGATGAGCAG GCCCCCAGGGACTCCTGGAACAGTCTGGGCAAGATGAGCAG < 41bp 1 0.554504719184913 1 0.237606257200241 experiment 0.890990561630174 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43214071 chr17:43214063 nonsynonymous SNV 0.986 4 13 hm5C_associated_SNPs_38990 0 0 1 0 2 ACBD4 chr17:43214143 5'GT 43214143 Upstream 81bp
chr19 50753918 50753918 1 + C A THYM 50753921 + 50753901 50753941 41 CTGCGGGATCAGGCCGACTTCAGTGTTCTCCACTACGCGGG CTGCGGGATCAGGCCGAATTCAGTGTTCTCCACTACGCGGG < 41bp 1 0.753983663066929 1 0.78482985496521 experiment 0.492032673866143 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50753921 chr19:50753918 nonsynonymous SNV 0.995 1 18 hm5C_associated_SNPs_38991 0 0 0 0 1 MYH14 chr19:50753945 5'GT 50753945 Upstream 28bp
chr2 100009524 100009524 1 + T G THYM 100009522 + 100009502 100009542 41 ACATTGGCTGGTTTACCCCTCCTTGTGGCTTATAAAGAAGA ACATTGGCTGGTTTACCCCTCCGTGTGGCTTATAAAGAAGA < 41bp 1 0.130814422929175 1 0.485038697719574 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:100009522 chr2:100009524 nonsynonymous SNV 0.926 2 23 hm5C_associated_SNPs_38993 0 0 1 0 2 EIF5B chr2:100009430 3'AG 100009430 Downstream 95bp
chr2 100009524 100009524 1 + T G THYM 100009522 + 100009502 100009542 41 ACATTGGCTGGTTTACCCCTCCTTGTGGCTTATAAAGAAGA ACATTGGCTGGTTTACCCCTCCGTGTGGCTTATAAAGAAGA < 41bp 1 0.130814422929175 1 0.485038697719574 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:100009522 chr2:100009524 nonsynonymous SNV 0.926 2 23 hm5C_associated_SNPs_38993 0 0 1 0 2 EIF5B chr2:100009561 5'GT 100009561 Upstream 38bp
chr15 64424072 64424072 1 + G A THYM 64424067 + 64424047 64424087 41 GCTGAGCTCCTGAGTGACTACATTCGCCTCCTGGCCATAGT GCTGAGCTCCTGAGTGACTACATTCACCTCCTGGCCATAGT < 41bp 1 0.0673662944929464 1 0.0652013421058655 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64424067 chr15:64424072 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_38995 0 0 1 0 1 SNX1 chr15:64424091 5'GT 64424091 Upstream 20bp
chr19 54969669 54969669 1 + C T THYM 54969650 + 54969630 54969670 41 ATGTCTGGCTACCTCGTGGACAAGTTTGCAGATCGGGAGCG ATGTCTGGCTACCTCGTGGACAAGTTTGCAGATCGGGAGTG < 41bp 1 0.44002775135332 1 0.158449918031693 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54969650 chr19:54969669 nonsynonymous SNV 0.999 4 40 hm5C_associated_SNPs_38996 0 0 1 0 1 LENG8 chr19:54969700 5'GT 54969700 Upstream 32bp
chr19 54969669 54969669 1 + C T THYM 54969680 + 54969660 54969700 41 GATCGGGAGCGCAAGGTCGCCCTCAAGGCCATGATCAAAAC GATCGGGAGTGCAAGGTCGCCCTCAAGGCCATGATCAAAAC < 41bp 1 0.131683868152986 1 0.200230777263641 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54969680 chr19:54969669 nonsynonymous SNV 0.999 4 10 hm5C_associated_SNPs_38997 0 0 1 0 1 LENG8 chr19:54969700 5'GT 54969700 Upstream 32bp
chr11 66627141 66627141 1 + G T THYM 66627122 + 66627102 66627142 41 CTGCAGGATTGTCCCAGCCTCCAGCCACCACTTCCTGCTGA CTGCAGGATTGTCCCAGCCTCCAGCCACCACTTCCTGCTTA < 41bp 1 0.210709927530226 1 0.455601066350937 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRFN4 ENSG00000173621 CDS Human protein_coding chr11:66627122 chr11:66627141 synonymous SNV . 0 40 hm5C_associated_SNPs_38999 0 0 1 0 1 LRFN4 chr11:66627108 3'AG 66627108 Downstream 34bp
chr11 66627141 66627141 1 + G T THYM 66627129 + 66627109 66627149 41 ATTGTCCCAGCCTCCAGCCACCACTTCCTGCTGAAGCACCT ATTGTCCCAGCCTCCAGCCACCACTTCCTGCTTAAGCACCT < 41bp 1 0.0754837564240763 1 0.0474924147129059 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRFN4 ENSG00000173621 CDS Human protein_coding chr11:66627129 chr11:66627141 synonymous SNV . 0 33 hm5C_associated_SNPs_39000 0 0 1 0 1 LRFN4 chr11:66627108 3'AG 66627108 Downstream 34bp
chr8 77619808 77619808 1 + G T THYM 77619825 + 77619805 77619845 41 TCCGGCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCC TCCTGCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCC < 41bp 1 0.21021137037411 1 0.496863484382629 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77619825 chr8:77619808 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_39001 0 0 1 0 1 ZFHX4 chr8:77619781 3'AG 77619781 Downstream 28bp
chr1 154248118 154248118 1 + C G THYM 154248129 + 154248109 154248149 41 CCTCCAGCCCTGGATGATGCCTTTTCCATCCTGGACTTATT CCTCCAGCCGTGGATGATGCCTTTTCCATCCTGGACTTATT < 41bp 1 0.0943439604532753 1 0.0476617515087128 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HAX1 ENSG00000143575 CDS Human protein_coding chr1:154248129 chr1:154248118 nonsynonymous SNV 0.579 3 10 hm5C_associated_SNPs_39002 0 0 1 0 1 HAX1 chr1:154248092 3'AG 154248092 Downstream 27bp
chr4 6606797 6606797 1 + G T THYM 6606785 + 6606765 6606805 41 TCCTGCTGGCCTTGCAGATCCAGAACTCAACAGAGACCCCA TCCTGCTGGCCTTGCAGATCCAGAACTCAACATAGACCCCA < 41bp 1 0.594082534834702 1 0.335415959358215 experiment 0.811834930330595 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6606785 chr4:6606797 stopgain 0.005 0 33 hm5C_associated_SNPs_39003 0 0 0 0 1 MAN2B2 chr4:6606782 3'AG 6606782 Downstream 16bp
chr9 96026294 96026294 1 + C A THYM 96026292 + 96026272 96026312 41 TCGACTTGGACGGGGACGCACCCGATGAAATTGCCACGTAT TCGACTTGGACGGGGACGCACCAGATGAAATTGCCACGTAT < 41bp 1 0.39794700882281 1 0.464355558156967 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WNK2 ENSG00000165238 CDS Human protein_coding chr9:96026292 chr9:96026294 synonymous SNV . 0 23 hm5C_associated_SNPs_39004 0 0 1 0 2 WNK2 chr9:96026199 3'AG 96026199 Downstream 96bp
chr9 96026294 96026294 1 + C A THYM 96026292 + 96026272 96026312 41 TCGACTTGGACGGGGACGCACCCGATGAAATTGCCACGTAT TCGACTTGGACGGGGACGCACCAGATGAAATTGCCACGTAT < 41bp 1 0.39794700882281 1 0.464355558156967 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WNK2 ENSG00000165238 CDS Human protein_coding chr9:96026292 chr9:96026294 synonymous SNV . 0 23 hm5C_associated_SNPs_39004 0 0 1 0 2 WNK2 chr9:96026315 5'GT 96026315 Upstream 22bp
chr19 10886517 10886517 1 + C T THYM 10886497 + 10886477 10886517 41 CAGTTCATCAGCCGGGAGAGCAGCCTCATTCTGGCTGTCAC CAGTTCATCAGCCGGGAGAGCAGCCTCATTCTGGCTGTCAT < 41bp 1 0.189544017457159 1 0.140782833099365 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10886497 chr19:10886517 nonsynonymous SNV 0.225 5 41 hm5C_associated_SNPs_39006 0 0 1 0 1 DNM2 chr19:10886582 5'GT 10886582 Upstream 66bp
chr22 35719878 35719878 1 + G T THYM 35719884 + 35719864 35719904 41 CCATACTCTCCGGTGACACGCCCATAGCACCAACCCCGGAA CCATACTCTCCGGTTACACGCCCATAGCACCAACCCCGGAA < 41bp 1 0.175498585644198 1 0.132213473320007 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOM1 ENSG00000100284 CDS Human protein_coding chr22:35719884 chr22:35719878 nonsynonymous SNV 0.070 2 15 hm5C_associated_SNPs_39007 0 0 1 0 1 TOM1 chr22:35719907 5'GT 35719907 Upstream 30bp
chr16 50655550 50655550 1 + C T THYM 50655547 + 50655527 50655567 41 GAGAAGACTGACGGGCTGGGCAGCGGAGATGAGAAGAAGAT GAGAAGACTGACGGGCTGGGCAGTGGAGATGAGAAGAAGAT < 41bp 1 0.273015982273613 1 0.464475333690643 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NKD1 ENSG00000140807 CDS Human protein_coding chr16:50655547 chr16:50655550 synonymous SNV . 0 24 hm5C_associated_SNPs_39008 0 0 1 0 2 NKD1 chr16:50655513 3'AG 50655513 Downstream 38bp
chr16 50655550 50655550 1 + C T THYM 50655547 + 50655527 50655567 41 GAGAAGACTGACGGGCTGGGCAGCGGAGATGAGAAGAAGAT GAGAAGACTGACGGGCTGGGCAGTGGAGATGAGAAGAAGAT < 41bp 1 0.273015982273613 1 0.464475333690643 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NKD1 ENSG00000140807 CDS Human protein_coding chr16:50655547 chr16:50655550 synonymous SNV . 0 24 hm5C_associated_SNPs_39008 0 0 1 0 2 NKD1 chr16:50655619 5'GT 50655619 Upstream 70bp
chr1 109772147 109772147 1 + G T THYM 109772129 + 109772109 109772149 41 GGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCCGAGAG GGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCCGATAG < 41bp 1 0.604103423698463 1 0.28643411397934 experiment 0.791793152603073 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SARS ENSG00000031698 CDS Human protein_coding chr1:109772129 chr1:109772147 stopgain 0.988 1 39 hm5C_associated_SNPs_39009 0 0 1 0 1 SARS chr1:109772194 5'GT 109772194 Upstream 48bp
chr8 21859710 21859710 1 + G T THYM 21859721 + 21859701 21859741 41 CCAAGAAGAGGACCACACCCCTGAACCAGGAGAGCGACCGC CCAAGAAGATGACCACACCCCTGAACCAGGAGAGCGACCGC < 41bp 1 0.705390738341055 1 0.742459654808044 experiment 0.58921852331789 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21859721 chr8:21859710 nonsynonymous SNV 0.997 1 10 hm5C_associated_SNPs_39010 0 0 1 0 2 XPO7 chr8:21859623 3'AG 21859623 Downstream 88bp
chr8 21859710 21859710 1 + G T THYM 21859721 + 21859701 21859741 41 CCAAGAAGAGGACCACACCCCTGAACCAGGAGAGCGACCGC CCAAGAAGATGACCACACCCCTGAACCAGGAGAGCGACCGC < 41bp 1 0.705390738341055 1 0.742459654808044 experiment 0.58921852331789 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21859721 chr8:21859710 nonsynonymous SNV 0.997 1 10 hm5C_associated_SNPs_39010 0 0 1 0 2 XPO7 chr8:21859783 5'GT 21859783 Upstream 74bp
chr17 61907730 61907730 1 + G T THYM 61907746 + 61907726 61907766 41 GGTGGAGAAAGTACCAGATTCAACTTATGAGATGATTGGTG GGTGTAGAAAGTACCAGATTCAACTTATGAGATGATTGGTG < 41bp 1 0.379410704718763 1 0.464023500680923 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61907746 chr17:61907730 stopgain 0.999 1 5 hm5C_associated_SNPs_39012 0 0 1 0 1 PSMC5 chr17:61907631 3'AG 61907631 Downstream 100bp
chr17 61907730 61907730 1 + G T THYM 61907749 + 61907729 61907769 41 GGAGAAAGTACCAGATTCAACTTATGAGATGATTGGTGGAC GTAGAAAGTACCAGATTCAACTTATGAGATGATTGGTGGAC < 41bp 1 0.267899045315552 1 0.10838919878006 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61907749 chr17:61907730 stopgain 0.999 1 2 hm5C_associated_SNPs_39013 0 0 1 0 1 PSMC5 chr17:61907631 3'AG 61907631 Downstream 100bp
chr17 78082391 78082391 1 + G A THYM 78082382 + 78082362 78082402 41 ACCCGCCAGGTGGTGGAGAACATGACCAGGGCCCACTTCCC ACCCGCCAGGTGGTGGAGAACATGACCAGAGCCCACTTCCC < 41bp 1 0.775871915111868 1 0.160386353731155 experiment 0.448256169776264 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082382 chr17:78082391 synonymous SNV . 0 30 hm5C_associated_SNPs_39015 0 0 0 0 1 GAA chr17:78082406 5'GT 78082406 Upstream 16bp
chr17 78082391 78082391 1 + G A THYM 78082400 + 78082380 78082420 41 AACATGACCAGGGCCCACTTCCCCCTGGTGAGTTGGGGTGG AACATGACCAGAGCCCACTTCCCCCTGGTGAGTTGGGGTGG < 41bp 1 0.231624161460162 1 0.229816108942032 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082400 chr17:78082391 synonymous SNV . 0 12 hm5C_associated_SNPs_39016 0 0 0 0 1 GAA chr17:78082406 5'GT 78082406 Upstream 16bp
chr17 78082391 78082391 1 + G A THYM 78082404 + 78082384 78082424 41 TGACCAGGGCCCACTTCCCCCTGGTGAGTTGGGGTGGTGGC TGACCAGAGCCCACTTCCCCCTGGTGAGTTGGGGTGGTGGC < 41bp 1 0.588237139910753 1 0.363253653049469 experiment 0.823525720178494 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082404 chr17:78082391 synonymous SNV . 0 8 hm5C_associated_SNPs_39017 0 0 0 0 1 GAA chr17:78082406 5'GT 78082406 Upstream 16bp
chrX 153780352 153780352 1 + G T THYM 153780337 + 153780317 153780357 41 GGGAAGCCAGCCATGCTGCACCTGCCTTCAGAACAGGGCGC GGGAAGCCAGCCATGCTGCACCTGCCTTCAGAACATGGCGC < 41bp 1 0.0746711008133 1 0.11449721455574 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IKBKG ENSG00000073009 CDS Human other chrX:153780337 chrX:153780352 nonsynonymous SNV 0.095 1 36 hm5C_associated_SNPs_39020 0 0 1 0 1 IKBKG chrX:153780404 5'GT 153780404 Upstream 53bp
chr3 40503432 40503432 1 + G T THYM 40503435 + 40503415 40503455 41 ATTGATAATTTTCAGAGGAACAGAATAATCAAGAATGAAGT ATTGATAATTTTCAGAGTAACAGAATAATCAAGAATGAAGT < 41bp 1 0.667082228354605 1 0.236316561698914 experiment 0.665835543290791 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL14 ENSG00000188846 CDS Human other chr3:40503435 chr3:40503432 stopgain 0.997 4 18 hm5C_associated_SNPs_39022 0 0 1 0 1 RPL14 chr3:40503430 3'AG 40503430 Downstream 3bp
chrX 123195681 123195681 1 + C T UCEC 123195669 + 123195649 123195689 41 GATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAAT GATTGAAATAATGCTTTGTACCATTAGACAAGTGGCTGAAT < 41bp 1 0.0780004816706977 1 0.0404730141162872 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123195669 chrX:123195681 nonsynonymous SNV 0.995 2 33 hm5C_associated_SNPs_39023 0 0 1 0 1 STAG2 chrX:123195621 3'AG 123195621 Downstream 61bp
chrX 123195681 123195681 1 + C T UCEC 123195670 + 123195650 123195690 41 ATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAATG ATTGAAATAATGCTTTGTACCATTAGACAAGTGGCTGAATG < 41bp 1 0.395240801795965 1 0.0757402777671814 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123195670 chrX:123195681 nonsynonymous SNV 0.995 2 32 hm5C_associated_SNPs_39024 0 0 1 0 1 STAG2 chrX:123195621 3'AG 123195621 Downstream 61bp
chr20 47605106 47605106 1 + T A UCEC 47605120 + 47605100 47605140 41 GAAGAGTATCTCTCAAGCATCTATGAAGAGATAGAAGGCAA GAAGAGAATCTCTCAAGCATCTATGAAGAGATAGAAGGCAA < 41bp 1 0.27823906198657 1 0.172719895839691 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47605120 chr20:47605106 nonsynonymous SNV 0.967 4 7 hm5C_associated_SNPs_39025 0 0 1 0 1 ARFGEF2 chr20:47605028 3'AG 47605028 Downstream 79bp
chr20 60708477 60708477 1 + G A UCEC 60708483 + 60708463 60708503 41 TGGGACCACCCGTCGCAACCCCACTTCCCACAGGGCCGGGA TGGGACCACCCGTCACAACCCCACTTCCCACAGGGCCGGGA < 41bp 1 0.300833040752452 1 0.045563817024231 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LSM14B ENSG00000149657 CDS Human protein_coding chr20:60708483 chr20:60708477 nonsynonymous SNV 0.971 2 15 hm5C_associated_SNPs_39026 0 0 1 0 1 LSM14B chr20:60708531 5'GT 60708531 Upstream 55bp
chr20 49458396 49458396 1 + C T UCEC 49458380 + 49458360 49458400 41 GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGCGGAG GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGTGGAG < 41bp 1 0.263471791682881 1 0.0562769174575806 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49458380 chr20:49458396 nonsynonymous SNV 0.097 1 37 hm5C_associated_SNPs_39027 0 0 1 0 2 BCAS4 chr20:49458303 3'AG 49458303 Downstream 94bp
chr20 49458396 49458396 1 + C T UCEC 49458380 + 49458360 49458400 41 GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGCGGAG GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGTGGAG < 41bp 1 0.263471791682881 1 0.0562769174575806 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49458380 chr20:49458396 nonsynonymous SNV 0.097 1 37 hm5C_associated_SNPs_39027 0 0 1 0 2 BCAS4 chr20:49458437 5'GT 49458437 Upstream 42bp
chr1 225284938 225284938 1 + G A UCEC 225284922 + 225284902 225284942 41 TTTATCTTGAACCAGTCTTTCATTCTTCAGAAATACGAAGG TTTATCTTGAACCAGTCTTTCATTCTTCAGAAATACAAAGG < 41bp 1 0.0203856818575648 1 0.0632159113883972 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DNAH14 ENSG00000185842 CDS Human protein_coding chr1:225284922 chr1:225284938 nonsynonymous SNV 0.988 0 37 hm5C_associated_SNPs_39029 0 0 0 0 1 DNAH14 chr1:225284941 5'GT 225284941 Upstream 4bp
chr17 80193906 80193906 1 + G A UCEC 80193913 + 80193893 80193933 41 GGCCGTGGTGGACGAGGGCCCCACAGGCGTCAAGGCCCCTG GGCCGTGGTGGACAAGGGCCCCACAGGCGTCAAGGCCCCTG < 41bp 1 0.570850056321234 1 0.0384563207626343 experiment 0.858299887357532 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC16A3 ENSG00000141526 CDS Human protein_coding chr17:80193913 chr17:80193906 nonsynonymous SNV 0.730 0 14 hm5C_associated_SNPs_39030 0 0 1 0 1 SLC16A3 chr17:80193859 3'AG 80193859 Downstream 48bp
chr1 874698 874698 1 + G T UCEC 874684 + 874664 874704 41 TGCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGAC TGCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCTGAGGAC < 41bp 1 0.543725781080468 1 0.410477101802826 experiment 0.912548437839065 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874684 chr1:874698 synonymous SNV . 0 35 hm5C_associated_SNPs_39033 0 0 0 0 2 SAMD11 chr1:874652 3'AG 874652 Downstream 47bp
chr1 874698 874698 1 + G T UCEC 874684 + 874664 874704 41 TGCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGAC TGCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCTGAGGAC < 41bp 1 0.543725781080468 1 0.410477101802826 experiment 0.912548437839065 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874684 chr1:874698 synonymous SNV . 0 35 hm5C_associated_SNPs_39033 0 0 0 0 2 SAMD11 chr1:874792 5'GT 874792 Upstream 95bp
chr1 874698 874698 1 + G T UCEC 874685 + 874665 874705 41 GCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGACC GCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCTGAGGACC < 41bp 1 0.581263677105906 1 0.582204818725586 experiment 0.837472645788188 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874685 chr1:874698 synonymous SNV . 0 34 hm5C_associated_SNPs_39034 0 0 0 0 2 SAMD11 chr1:874652 3'AG 874652 Downstream 47bp
chr1 874698 874698 1 + G T UCEC 874685 + 874665 874705 41 GCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGACC GCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCTGAGGACC < 41bp 1 0.581263677105906 1 0.582204818725586 experiment 0.837472645788188 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874685 chr1:874698 synonymous SNV . 0 34 hm5C_associated_SNPs_39034 0 0 0 0 2 SAMD11 chr1:874792 5'GT 874792 Upstream 95bp
chr1 874698 874698 1 + G T UCEC 874694 + 874674 874714 41 GGAGCTGGGGCCCAGCATGGCCCCGGAGGACCATTACCGCC GGAGCTGGGGCCCAGCATGGCCCCTGAGGACCATTACCGCC < 41bp 1 0.471458775638093 1 0.0855833888053894 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874694 chr1:874698 synonymous SNV . 0 25 hm5C_associated_SNPs_39035 0 0 0 0 2 SAMD11 chr1:874652 3'AG 874652 Downstream 47bp
chr1 874698 874698 1 + G T UCEC 874694 + 874674 874714 41 GGAGCTGGGGCCCAGCATGGCCCCGGAGGACCATTACCGCC GGAGCTGGGGCCCAGCATGGCCCCTGAGGACCATTACCGCC < 41bp 1 0.471458775638093 1 0.0855833888053894 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874694 chr1:874698 synonymous SNV . 0 25 hm5C_associated_SNPs_39035 0 0 0 0 2 SAMD11 chr1:874792 5'GT 874792 Upstream 95bp
chr1 874698 874698 1 + G T UCEC 874695 + 874675 874715 41 GAGCTGGGGCCCAGCATGGCCCCGGAGGACCATTACCGCCG GAGCTGGGGCCCAGCATGGCCCCTGAGGACCATTACCGCCG < 41bp 1 0.460312681087045 1 0.139706045389175 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874695 chr1:874698 synonymous SNV . 0 24 hm5C_associated_SNPs_39036 0 0 0 0 2 SAMD11 chr1:874652 3'AG 874652 Downstream 47bp
chr1 874698 874698 1 + G T UCEC 874695 + 874675 874715 41 GAGCTGGGGCCCAGCATGGCCCCGGAGGACCATTACCGCCG GAGCTGGGGCCCAGCATGGCCCCTGAGGACCATTACCGCCG < 41bp 1 0.460312681087045 1 0.139706045389175 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874695 chr1:874698 synonymous SNV . 0 24 hm5C_associated_SNPs_39036 0 0 0 0 2 SAMD11 chr1:874792 5'GT 874792 Upstream 95bp
chr1 874698 874698 1 + G T UCEC 874696 + 874676 874716 41 AGCTGGGGCCCAGCATGGCCCCGGAGGACCATTACCGCCGG AGCTGGGGCCCAGCATGGCCCCTGAGGACCATTACCGCCGG < 41bp 1 0.693114459081797 1 0.538280606269836 experiment 0.613771081836406 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874696 chr1:874698 synonymous SNV . 0 23 hm5C_associated_SNPs_39037 0 0 0 0 2 SAMD11 chr1:874652 3'AG 874652 Downstream 47bp
chr1 874698 874698 1 + G T UCEC 874696 + 874676 874716 41 AGCTGGGGCCCAGCATGGCCCCGGAGGACCATTACCGCCGG AGCTGGGGCCCAGCATGGCCCCTGAGGACCATTACCGCCGG < 41bp 1 0.693114459081797 1 0.538280606269836 experiment 0.613771081836406 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874696 chr1:874698 synonymous SNV . 0 23 hm5C_associated_SNPs_39037 0 0 0 0 2 SAMD11 chr1:874792 5'GT 874792 Upstream 95bp
chr1 39751388 39751388 1 + T C UCEC 39751378 + 39751358 39751398 41 TCAGGCAGCTGCAGGTGGATCTCCAGATCCTGCGGGATGAG TCAGGCAGCTGCAGGTGGATCTCCAGATCCCGCGGGATGAG < 41bp 1 0.520908077245051 1 0.807735025882721 experiment 0.958183845509899 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39751378 chr1:39751388 nonsynonymous SNV 0.996 4 31 hm5C_associated_SNPs_39039 0 0 1 0 1 MACF1 chr1:39751430 5'GT 39751430 Upstream 43bp
chr1 156876653 156876653 1 + G A UCEC 156876640 + 156876620 156876660 41 TGCGATCCCCAGACTGGAGCCTGCTTCTGCCCCGCAGAGAG TGCGATCCCCAGACTGGAGCCTGCTTCTGCCCCACAGAGAG < 41bp 1 0.296731330692863 1 0.227297633886337 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156876640 chr1:156876653 nonsynonymous SNV 0.900 1 34 hm5C_associated_SNPs_39040 0 0 0 0 1 PEAR1 chr1:156876672 5'GT 156876672 Upstream 20bp
chr12 22208521 22208521 1 + G A UCEC 22208514 + 22208494 22208534 41 TCTCTGTTGTGAGACGCCATCAGTTTCGATGGAGTGAAATT TCTCTGTTGTGAGACGCCATCAGTTTCAATGGAGTGAAATT < 41bp 1 0.327294187872562 1 0.185134381055832 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208514 chr12:22208521 nonsynonymous SNV 0.999 3 28 hm5C_associated_SNPs_39041 0 0 0 0 1 CMAS chr12:22208544 5'GT 22208544 Upstream 24bp
chr5 68692327 68692327 1 + G T UCEC 68692324 + 68692304 68692344 41 TCATTGCCAAGGAGGAGGATCAAGTTTTCGACCCTTGCACA TCATTGCCAAGGAGGAGGATCAATTTTTCGACCCTTGCACA < 41bp 1 0.296600104017087 1 0.245425462722778 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD17 ENSG00000152942 CDS Human protein_coding chr5:68692324 chr5:68692327 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_39043 0 0 1 0 1 RAD17 chr5:68692373 5'GT 68692373 Upstream 47bp
chr17 41561546 41561546 1 + G A UCEC 41561537 + 41561517 41561557 41 CTGGACAATCACTTGGGGATCAACGACAAGGACCTTGGTGA CTGGACAATCACTTGGGGATCAACGACAAAGACCTTGGTGA < 41bp 1 0.526918174498093 1 0.327905118465424 experiment 0.946163651003814 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41561537 chr17:41561546 synonymous SNV . 0 30 hm5C_associated_SNPs_39044 0 0 1 0 1 DHX8 chr17:41561553 5'GT 41561553 Upstream 8bp
chr17 47115724 47115724 1 + G A UCEC 47115716 + 47115696 47115736 41 AAGCAGCAGCAAGTGGACATCCCCCTTCGGCTCCTGGTGCC AAGCAGCAGCAAGTGGACATCCCCCTTCAGCTCCTGGTGCC < 41bp 1 0.237566673446031 1 0.09939244389534 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47115716 chr17:47115724 nonsynonymous SNV 0.966 4 29 hm5C_associated_SNPs_39045 0 0 1 0 1 IGF2BP1 chr17:47115811 5'GT 47115811 Upstream 88bp
chr17 47115724 47115724 1 + G A UCEC 47115718 + 47115698 47115738 41 GCAGCAGCAAGTGGACATCCCCCTTCGGCTCCTGGTGCCCA GCAGCAGCAAGTGGACATCCCCCTTCAGCTCCTGGTGCCCA < 41bp 1 0.0698082660997166 1 0.0571526288986206 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47115718 chr17:47115724 nonsynonymous SNV 0.966 4 27 hm5C_associated_SNPs_39046 0 0 1 0 1 IGF2BP1 chr17:47115811 5'GT 47115811 Upstream 88bp
chr19 56172440 56172440 1 + C A UCEC 56172435 + 56172415 56172455 41 ATTCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGG ATTCCAGCCACTGCTCTTCTCCCCAACATGACCCCTGACGG < 41bp 1 0.648013928445645 1 0.783722519874573 experiment 0.703972143108709 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172435 chr19:56172440 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_39047 0 0 1 0 1 U2AF2 chr19:56172404 3'AG 56172404 Downstream 37bp
chr19 56172440 56172440 1 + C A UCEC 56172437 + 56172417 56172457 41 TCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGGTC TCCAGCCACTGCTCTTCTCCCCAACATGACCCCTGACGGTC < 41bp 1 0.137099578609685 1 0.317163020372391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172437 chr19:56172440 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_39048 0 0 1 0 1 U2AF2 chr19:56172404 3'AG 56172404 Downstream 37bp
chr19 56172440 56172440 1 + C A UCEC 56172438 + 56172418 56172458 41 CCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGGTCT CCAGCCACTGCTCTTCTCCCCAACATGACCCCTGACGGTCT < 41bp 1 0.631386766277584 1 0.551837623119354 experiment 0.737226467444831 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172438 chr19:56172440 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_39049 0 0 1 0 1 U2AF2 chr19:56172404 3'AG 56172404 Downstream 37bp
chr5 74069881 74069881 1 + T G UCEC 74069862 + 74069842 74069882 41 GAGCGAATTGGGCCTTGTGACACAAGGAGGCAAAGTTATTT GAGCGAATTGGGCCTTGTGACACAAGGAGGCAAAGTTATGT < 41bp 1 0.765751521645138 1 0.287834048271179 experiment 0.468496956709723 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NSA2 ENSG00000164346 CDS Human protein_coding chr5:74069862 chr5:74069881 nonsynonymous SNV 0.998 1 40 hm5C_associated_SNPs_39050 0 0 1 0 1 NSA2 chr5:74069885 5'GT 74069885 Upstream 5bp
chr18 12718612 12718612 1 + C T UCEC 12718592 + 12718572 12718612 41 TGCCAGAGTCATTGTTCTTTCAAGCAGTCATTCATATCAGC TGCCAGAGTCATTGTTCTTTCAAGCAGTCATTCATATCAGT < 41bp 1 0.709988589368315 1 0.685473680496216 experiment 0.58002282126337 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMG2 ENSG00000128789 CDS Human protein_coding chr18:12718592 chr18:12718612 nonsynonymous SNV 0.825 1 41 hm5C_associated_SNPs_39051 0 0 1 0 2 PSMG2 chr18:12718516 3'AG 12718516 Downstream 97bp
chr18 12718612 12718612 1 + C T UCEC 12718592 + 12718572 12718612 41 TGCCAGAGTCATTGTTCTTTCAAGCAGTCATTCATATCAGC TGCCAGAGTCATTGTTCTTTCAAGCAGTCATTCATATCAGT < 41bp 1 0.709988589368315 1 0.685473680496216 experiment 0.58002282126337 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMG2 ENSG00000128789 CDS Human protein_coding chr18:12718592 chr18:12718612 nonsynonymous SNV 0.825 1 41 hm5C_associated_SNPs_39051 0 0 1 0 2 PSMG2 chr18:12718634 5'GT 12718634 Upstream 23bp
chr18 12718612 12718612 1 + C T UCEC 12718624 + 12718604 12718644 41 CATATCAGCGTAATGATCTGCAGCTTCGTAGGTATGTTTCT CATATCAGTGTAATGATCTGCAGCTTCGTAGGTATGTTTCT < 41bp 1 0.417567882384709 1 0.406907618045807 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMG2 ENSG00000128789 CDS Human protein_coding chr18:12718624 chr18:12718612 nonsynonymous SNV 0.825 1 9 hm5C_associated_SNPs_39052 0 0 1 0 2 PSMG2 chr18:12718516 3'AG 12718516 Downstream 97bp
chr18 12718612 12718612 1 + C T UCEC 12718624 + 12718604 12718644 41 CATATCAGCGTAATGATCTGCAGCTTCGTAGGTATGTTTCT CATATCAGTGTAATGATCTGCAGCTTCGTAGGTATGTTTCT < 41bp 1 0.417567882384709 1 0.406907618045807 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMG2 ENSG00000128789 CDS Human protein_coding chr18:12718624 chr18:12718612 nonsynonymous SNV 0.825 1 9 hm5C_associated_SNPs_39052 0 0 1 0 2 PSMG2 chr18:12718634 5'GT 12718634 Upstream 23bp
chr15 41571579 41571579 1 + C A UCEC 41571595 + 41571575 41571615 41 ATTTCTTCACTAAAGGAGACCAAACTGTTCCTTGCGGTCTA ATTTATTCACTAAAGGAGACCAAACTGTTCCTTGCGGTCTA < 41bp 1 0.217428576150193 1 0.172593802213669 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CHP1 ENSG00000187446 CDS Human protein_coding chr15:41571595 chr15:41571579 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_39053 0 0 1 0 1 CHP1 chr15:41571534 3'AG 41571534 Downstream 46bp
chr3 49060159 49060159 1 + G A UCEC 49060174 + 49060154 49060194 41 TCACCGAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC TCACCAAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC < 41bp 1 0.375489224237678 1 0.242324560880661 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060174 chr3:49060159 nonsynonymous SNV 0.954 3 6 hm5C_associated_SNPs_39054 0 0 1 0 2 NDUFAF3 chr3:49060135 3'AG 49060135 Downstream 25bp
chr3 49060159 49060159 1 + G A UCEC 49060174 + 49060154 49060194 41 TCACCGAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC TCACCAAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC < 41bp 1 0.375489224237678 1 0.242324560880661 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060174 chr3:49060159 nonsynonymous SNV 0.954 3 6 hm5C_associated_SNPs_39054 0 0 1 0 2 NDUFAF3 chr3:49060201 5'GT 49060201 Upstream 43bp
chr3 155629025 155629025 1 + G T UCEC 155629040 + 155629020 155629060 41 AGCCAGTCTGTTGAAGAGGCCCTCAAAAAGCTTGGAATTCA AGCCATTCTGTTGAAGAGGCCCTCAAAAAGCTTGGAATTCA < 41bp 1 0.106659960626835 1 0.0762109756469727 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GMPS ENSG00000163655 CDS Human protein_coding chr3:155629040 chr3:155629025 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_39055 0 0 1 0 1 GMPS chr3:155629068 5'GT 155629068 Upstream 44bp
chr20 55968380 55968380 1 + G A UCEC 55968361 + 55968341 55968381 41 CCATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGG CCATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCAG < 41bp 1 0.108723116093505 1 0.115832328796387 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968361 chr20:55968380 nonsynonymous SNV 0.989 1 40 hm5C_associated_SNPs_39057 0 0 1 0 2 RBM38 chr20:55968335 3'AG 55968335 Downstream 46bp
chr20 55968380 55968380 1 + G A UCEC 55968361 + 55968341 55968381 41 CCATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGG CCATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCAG < 41bp 1 0.108723116093505 1 0.115832328796387 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968361 chr20:55968380 nonsynonymous SNV 0.989 1 40 hm5C_associated_SNPs_39057 0 0 1 0 2 RBM38 chr20:55968389 5'GT 55968389 Upstream 10bp
chr20 55968380 55968380 1 + G A UCEC 55968363 + 55968343 55968383 41 ATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGAC ATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCAGAC < 41bp 1 0.358251727900672 1 0.220673620700836 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968363 chr20:55968380 nonsynonymous SNV 0.989 1 38 hm5C_associated_SNPs_39058 0 0 1 0 2 RBM38 chr20:55968335 3'AG 55968335 Downstream 46bp
chr20 55968380 55968380 1 + G A UCEC 55968363 + 55968343 55968383 41 ATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGAC ATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCAGAC < 41bp 1 0.358251727900672 1 0.220673620700836 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968363 chr20:55968380 nonsynonymous SNV 0.989 1 38 hm5C_associated_SNPs_39058 0 0 1 0 2 RBM38 chr20:55968389 5'GT 55968389 Upstream 10bp
chr20 55968380 55968380 1 + G A UCEC 55968364 + 55968344 55968384 41 TTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACT TTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCAGACT < 41bp 1 0.0169828120419903 1 0.107390582561493 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968364 chr20:55968380 nonsynonymous SNV 0.989 1 37 hm5C_associated_SNPs_39059 0 0 1 0 2 RBM38 chr20:55968335 3'AG 55968335 Downstream 46bp
chr20 55968380 55968380 1 + G A UCEC 55968364 + 55968344 55968384 41 TTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACT TTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCAGACT < 41bp 1 0.0169828120419903 1 0.107390582561493 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968364 chr20:55968380 nonsynonymous SNV 0.989 1 37 hm5C_associated_SNPs_39059 0 0 1 0 2 RBM38 chr20:55968389 5'GT 55968389 Upstream 10bp
chr20 55968380 55968380 1 + G A UCEC 55968365 + 55968345 55968385 41 TGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACTT TGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCAGACTT < 41bp 1 0.0665273863464793 1 0.109325706958771 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968365 chr20:55968380 nonsynonymous SNV 0.989 1 36 hm5C_associated_SNPs_39060 0 0 1 0 2 RBM38 chr20:55968335 3'AG 55968335 Downstream 46bp
chr20 55968380 55968380 1 + G A UCEC 55968365 + 55968345 55968385 41 TGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACTT TGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCAGACTT < 41bp 1 0.0665273863464793 1 0.109325706958771 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968365 chr20:55968380 nonsynonymous SNV 0.989 1 36 hm5C_associated_SNPs_39060 0 0 1 0 2 RBM38 chr20:55968389 5'GT 55968389 Upstream 10bp
chr20 55968380 55968380 1 + G A UCEC 55968366 + 55968346 55968386 41 GGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACTTA GGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCAGACTTA < 41bp 1 0.212966875565953 1 0.303290575742722 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968366 chr20:55968380 nonsynonymous SNV 0.989 1 35 hm5C_associated_SNPs_39061 0 0 1 0 2 RBM38 chr20:55968335 3'AG 55968335 Downstream 46bp
chr20 55968380 55968380 1 + G A UCEC 55968366 + 55968346 55968386 41 GGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACTTA GGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCAGACTTA < 41bp 1 0.212966875565953 1 0.303290575742722 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968366 chr20:55968380 nonsynonymous SNV 0.989 1 35 hm5C_associated_SNPs_39061 0 0 1 0 2 RBM38 chr20:55968389 5'GT 55968389 Upstream 10bp
chr19 45375187 45375187 1 + A G UCEC 45375183 + 45375163 45375203 41 ACGACAGTGGCCCTCTGCATCTCCAAAGAGGGCCGCCCACC ACGACAGTGGCCCTCTGCATCTCCGAAGAGGGCCGCCCACC < 41bp 1 0.756679190982364 1 0.859354674816132 experiment 0.486641618035271 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45375183 chr19:45375187 nonsynonymous SNV 0.422 0 25 hm5C_associated_SNPs_39062 0 0 1 0 1 NECTIN2 chr19:45375110 3'AG 45375110 Downstream 78bp
chr1 44684021 44684021 1 + G A UCEC 44684019 + 44683999 44684039 41 TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGATGAT TGTACTCGGAGCAGGAGTACCAACTTTATCTCCACGATGAT < 41bp 1 0.430471706192886 1 0.357819378376007 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44684019 chr1:44684021 synonymous SNV . 0 23 hm5C_associated_SNPs_39063 0 0 1 0 2 DMAP1 chr1:44683983 3'AG 44683983 Downstream 39bp
chr1 44684021 44684021 1 + G A UCEC 44684019 + 44683999 44684039 41 TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGATGAT TGTACTCGGAGCAGGAGTACCAACTTTATCTCCACGATGAT < 41bp 1 0.430471706192886 1 0.357819378376007 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44684019 chr1:44684021 synonymous SNV . 0 23 hm5C_associated_SNPs_39063 0 0 1 0 2 DMAP1 chr1:44684013 3'AG 44684013 Downstream 9bp
chr1 33138423 33138423 1 + C A UCEC 33138407 + 33138387 33138427 41 TTCAGTTTATTCATGGTGGTCATACTGCCAAGATATCTGAT TTCAGTTTATTCATGGTGGTCATACTGCCAAGATATATGAT < 41bp 1 0.0533903259663875 1 0.0851960778236389 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBBP4 ENSG00000162521 CDS Human protein_coding chr1:33138407 chr1:33138423 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_39065 0 0 1 0 2 RBBP4 chr1:33138392 3'AG 33138392 Downstream 32bp
chr1 33138423 33138423 1 + C A UCEC 33138407 + 33138387 33138427 41 TTCAGTTTATTCATGGTGGTCATACTGCCAAGATATCTGAT TTCAGTTTATTCATGGTGGTCATACTGCCAAGATATATGAT < 41bp 1 0.0533903259663875 1 0.0851960778236389 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBBP4 ENSG00000162521 CDS Human protein_coding chr1:33138407 chr1:33138423 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_39065 0 0 1 0 2 RBBP4 chr1:33138502 5'GT 33138502 Upstream 80bp
chr10 124813267 124813267 1 + G A UCEC 124813278 + 124813258 124813298 41 AAGCATATCGATGCAGAATACTGACGTCTATAGGAGTGGGA AAGCATATCAATGCAGAATACTGACGTCTATAGGAGTGGGA < 41bp 1 0.327533829746029 1 0.113382041454315 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACADSB ENSG00000196177 CDS Human protein_coding chr10:124813278 chr10:124813267 nonsynonymous SNV 0.007 1 10 hm5C_associated_SNPs_39066 0 0 1 0 1 ACADSB chr10:124813211 3'AG 124813211 Downstream 57bp
chr10 118318695 118318695 1 + C T UCEC 118318713 + 118318693 118318733 41 GGCTGCCCACAGATGGGTCACTATGCTGATAGATATCCTGG GGTTGCCCACAGATGGGTCACTATGCTGATAGATATCCTGG < 41bp 1 0.349483213493057 1 0.0759322345256805 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318713 chr10:118318695 synonymous SNV . 0 3 hm5C_associated_SNPs_39067 0 0 0 0 1 PNLIP chr10:118318666 3'AG 118318666 Downstream 30bp
chr6 80741218 80741218 1 + C T UCEC 80741213 + 80741193 80741233 41 TCTTCTTCAGCAAATGAATGCATTTCGGTTAAAGGAAGAAT TCTTCTTCAGCAAATGAATGCATTTTGGTTAAAGGAAGAAT < 41bp 1 0.0360373123104157 1 0.11958509683609 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TTK ENSG00000112742 CDS Human protein_coding chr6:80741213 chr6:80741218 nonsynonymous SNV 1.000 0 26 hm5C_associated_SNPs_39068 0 0 1 0 2 TTK chr6:80741184 3'AG 80741184 Downstream 35bp
chr6 80741218 80741218 1 + C T UCEC 80741213 + 80741193 80741233 41 TCTTCTTCAGCAAATGAATGCATTTCGGTTAAAGGAAGAAT TCTTCTTCAGCAAATGAATGCATTTTGGTTAAAGGAAGAAT < 41bp 1 0.0360373123104157 1 0.11958509683609 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TTK ENSG00000112742 CDS Human protein_coding chr6:80741213 chr6:80741218 nonsynonymous SNV 1.000 0 26 hm5C_associated_SNPs_39068 0 0 1 0 2 TTK chr6:80741276 5'GT 80741276 Upstream 59bp
chr3 9788081 9788081 1 + C T UCEC 9788101 + 9788081 9788121 41 CCCAGGAAGCCCGAGAGCATCTCTACCTCGTCCTCTTCTTT TCCAGGAAGCCCGAGAGCATCTCTACCTCGTCCTCTTCTTT < 41bp 1 0.47773186609957 1 0.409530818462372 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9788101 chr3:9788081 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_39069 0 0 0 0 2 BRPF1 chr3:9787984 3'AG 9787984 Downstream 98bp
chr3 9788081 9788081 1 + C T UCEC 9788101 + 9788081 9788121 41 CCCAGGAAGCCCGAGAGCATCTCTACCTCGTCCTCTTCTTT TCCAGGAAGCCCGAGAGCATCTCTACCTCGTCCTCTTCTTT < 41bp 1 0.47773186609957 1 0.409530818462372 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9788101 chr3:9788081 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_39069 0 0 0 0 2 BRPF1 chr3:9788138 5'GT 9788138 Upstream 58bp
chr16 90030971 90030971 1 + C T UCEC 90030968 + 90030948 90030988 41 GTCTGTGTGCGCCGACTGCTCCGCGGTCTTCCACAGGTGGG GTCTGTGTGCGCCGACTGCTCCGTGGTCTTCCACAGGTGGG < 41bp 1 0.659571650132835 1 0.16153547167778 experiment 0.680856699734329 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90030968 chr16:90030971 nonsynonymous SNV 0.084 4 24 hm5C_associated_SNPs_39070 0 0 0 0 2 DEF8 chr16:90030874 3'AG 90030874 Downstream 98bp
chr16 90030971 90030971 1 + C T UCEC 90030968 + 90030948 90030988 41 GTCTGTGTGCGCCGACTGCTCCGCGGTCTTCCACAGGTGGG GTCTGTGTGCGCCGACTGCTCCGTGGTCTTCCACAGGTGGG < 41bp 1 0.659571650132835 1 0.16153547167778 experiment 0.680856699734329 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90030968 chr16:90030971 nonsynonymous SNV 0.084 4 24 hm5C_associated_SNPs_39070 0 0 0 0 2 DEF8 chr16:90030983 5'GT 90030983 Upstream 13bp
chrX 152770757 152770757 1 + C T UCEC 152770746 + 152770726 152770766 41 CTGACACCACGCTGCTGGACCTGCAGAACAACGACATCTCC CTGACACCACGCTGCTGGACCTGCAGAACAATGACATCTCC < 41bp 1 0.693031395752544 1 0.287556350231171 experiment 0.613937208494912 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BGN ENSG00000182492 CDS Human protein_coding chrX:152770746 chrX:152770757 synonymous SNV . 0 32 hm5C_associated_SNPs_39072 0 0 0 0 2 BGN chrX:152770696 3'AG 152770696 Downstream 62bp
chrX 152770757 152770757 1 + C T UCEC 152770746 + 152770726 152770766 41 CTGACACCACGCTGCTGGACCTGCAGAACAACGACATCTCC CTGACACCACGCTGCTGGACCTGCAGAACAATGACATCTCC < 41bp 1 0.693031395752544 1 0.287556350231171 experiment 0.613937208494912 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BGN ENSG00000182492 CDS Human protein_coding chrX:152770746 chrX:152770757 synonymous SNV . 0 32 hm5C_associated_SNPs_39072 0 0 0 0 2 BGN chrX:152770808 5'GT 152770808 Upstream 52bp
chr1 24019205 24019205 1 + A C UCEC 24019185 + 24019165 24019205 41 TGTGTTGGGGAGAGTGGAGACAGACTGACGCGAGCAGCCAA TGTGTTGGGGAGAGTGGAGACAGACTGACGCGAGCAGCCAC < 41bp 1 0.790876896945765 1 0.175962716341019 experiment 0.418246206108471 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24019185 chr1:24019205 nonsynonymous SNV 0.995 3 41 hm5C_associated_SNPs_39073 0 0 1 0 1 RPL11 chr1:24019249 5'GT 24019249 Upstream 45bp
chr5 128440932 128440932 1 + A C UCEC 128440946 + 128440926 128440966 41 TACCCTAAAGGTCTTGGGAGCACGGTTCAAGAAATTGATTT TACCCTCAAGGTCTTGGGAGCACGGTTCAAGAAATTGATTT < 41bp 1 0.579619499361022 1 0.382976889610291 experiment 0.840761001277956 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128440946 chr5:128440932 nonsynonymous SNV 0.993 1 7 hm5C_associated_SNPs_39076 0 0 1 0 1 ISOC1 chr5:128440878 3'AG 128440878 Downstream 55bp
chr11 66571476 66571476 1 + T G UCEC 66571496 + 66571476 66571516 41 TTTGGTACAATTGAATCACACTGCAGCAGAATTCACCCTGT GTTGGTACAATTGAATCACACTGCAGCAGAATTCACCCTGT < 41bp 1 0.750234251621181 1 0.76618754863739 experiment 0.499531496757639 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C11orf80 ENSG00000173715 CDS Human protein_coding chr11:66571496 chr11:66571476 nonsynonymous SNV 0.549 0 1 hm5C_associated_SNPs_39077 0 0 1 0 2 C11orf80 chr11:66571466 3'AG 66571466 Downstream 11bp
chr11 66571476 66571476 1 + T G UCEC 66571496 + 66571476 66571516 41 TTTGGTACAATTGAATCACACTGCAGCAGAATTCACCCTGT GTTGGTACAATTGAATCACACTGCAGCAGAATTCACCCTGT < 41bp 1 0.750234251621181 1 0.76618754863739 experiment 0.499531496757639 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C11orf80 ENSG00000173715 CDS Human protein_coding chr11:66571496 chr11:66571476 nonsynonymous SNV 0.549 0 1 hm5C_associated_SNPs_39077 0 0 1 0 2 C11orf80 chr11:66571469 3'AG 66571469 Downstream 8bp
chrX 152959702 152959702 1 + G A UCEC 152959707 + 152959687 152959727 41 CTCTGCTTTGTCATCGATCTCTCCATGGTGACTGATGTGAG CTCTGCTTTGTCATCAATCTCTCCATGGTGACTGATGTGAG < 41bp 1 0.767474832017441 1 0.950749456882477 experiment 0.465050335965119 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959707 chrX:152959702 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_39078 0 0 1 4 1 SLC6A8 chrX:152959722 5'GT 152959722 Upstream 21bp
chrX 152959702 152959702 1 + G A UCEC 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG CATCAATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG < 41bp 1 0.309439072020366 1 0.0752876996994019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959702 nonsynonymous SNV 0.998 1 5 hm5C_associated_SNPs_39079 0 0 1 4 1 SLC6A8 chrX:152959722 5'GT 152959722 Upstream 21bp
chr9 100774709 100774709 1 + G A UCEC 100774718 + 100774698 100774738 41 TTTAGGAAGAAGAATTTGGACTTGATGAAGAAGATGAAGAT TTTAGGAAGAAAAATTTGGACTTGATGAAGAAGATGAAGAT < 41bp 1 0.474813705419227 1 0.220177352428436 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100774718 chr9:100774709 nonsynonymous SNV 0.995 1 12 hm5C_associated_SNPs_39080 0 0 1 0 2 ANP32B chr9:100774703 3'AG 100774703 Downstream 7bp
chr9 100774709 100774709 1 + G A UCEC 100774718 + 100774698 100774738 41 TTTAGGAAGAAGAATTTGGACTTGATGAAGAAGATGAAGAT TTTAGGAAGAAAAATTTGGACTTGATGAAGAAGATGAAGAT < 41bp 1 0.474813705419227 1 0.220177352428436 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100774718 chr9:100774709 nonsynonymous SNV 0.995 1 12 hm5C_associated_SNPs_39080 0 0 1 0 2 ANP32B chr9:100774754 5'GT 100774754 Upstream 46bp
chr12 6961425 6961425 1 + G A UCEC 6961445 + 6961425 6961465 41 GACGAGTGCGCCTTCTCCTTCGACACGCCGGTAAGCCCATT AACGAGTGCGCCTTCTCCTTCGACACGCCGGTAAGCCCATT < 41bp 1 0.651582250661102 1 0.747104048728943 experiment 0.696835498677796 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control USP5 ENSG00000111667 CDS Human protein_coding chr12:6961445 chr12:6961425 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_39083 0 0 1 0 1 USP5 chr12:6961454 5'GT 6961454 Upstream 30bp
chr8 143783070 143783070 1 + C T UCEC 143783082 + 143783062 143783102 41 AACACTTTCGAGTGCCAGAACCCAAGGAGGTGCAAATGGAC AACACTTTTGAGTGCCAGAACCCAAGGAGGTGCAAATGGAC < 41bp 1 0.39958202899371 1 0.372003257274628 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LY6K ENSG00000160886 CDS Human protein_coding chr8:143783082 chr8:143783070 synonymous SNV . 0 9 hm5C_associated_SNPs_39084 0 0 0 0 2 LY6K chr8:143783018 3'AG 143783018 Downstream 53bp
chr8 143783070 143783070 1 + C T UCEC 143783082 + 143783062 143783102 41 AACACTTTCGAGTGCCAGAACCCAAGGAGGTGCAAATGGAC AACACTTTTGAGTGCCAGAACCCAAGGAGGTGCAAATGGAC < 41bp 1 0.39958202899371 1 0.372003257274628 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LY6K ENSG00000160886 CDS Human protein_coding chr8:143783082 chr8:143783070 synonymous SNV . 0 9 hm5C_associated_SNPs_39084 0 0 0 0 2 LY6K chr8:143783131 5'GT 143783131 Upstream 62bp
chr16 67914038 67914038 1 + C T UCEC 67914050 + 67914030 67914070 41 AGTGGCAGCCTTCAGGCAAGCCCGCGTGGCCTCCTGCCTGG AGTGGCAGTCTTCAGGCAAGCCCGCGTGGCCTCCTGCCTGG < 41bp 1 0.652719267474742 1 0.254747152328491 experiment 0.694561465050516 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914050 chr16:67914038 synonymous SNV . 0 9 hm5C_associated_SNPs_39085 0 0 1 0 2 EDC4 chr16:67913966 3'AG 67913966 Downstream 73bp
chr16 67914038 67914038 1 + C T UCEC 67914050 + 67914030 67914070 41 AGTGGCAGCCTTCAGGCAAGCCCGCGTGGCCTCCTGCCTGG AGTGGCAGTCTTCAGGCAAGCCCGCGTGGCCTCCTGCCTGG < 41bp 1 0.652719267474742 1 0.254747152328491 experiment 0.694561465050516 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914050 chr16:67914038 synonymous SNV . 0 9 hm5C_associated_SNPs_39085 0 0 1 0 2 EDC4 chr16:67914119 5'GT 67914119 Upstream 82bp
chr11 118247394 118247394 1 + A G UCEC 118247379 + 118247359 118247399 41 AACAGAGAACCTTGCTCTGACAGAGTACACCTTGTACTTGG AACAGAGAACCTTGCTCTGACAGAGTACACCTTGTGCTTGG < 41bp 1 0.707173241165139 1 0.482723295688629 experiment 0.585653517669722 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE4A ENSG00000110344 CDS Human protein_coding chr11:118247379 chr11:118247394 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_39086 0 0 1 0 1 UBE4A chr11:118247409 5'GT 118247409 Upstream 16bp
chr9 4697161 4697161 1 + G T UCEC 4697148 + 4697128 4697168 41 TTTTTGTCTGACCATCCATACCTTGTATGTGAAGAAACTGC TTTTTGTCTGACCATCCATACCTTGTATGTGAATAAACTGC < 41bp 1 0.051169291709529 1 0.0489274859428406 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC37L1 ENSG00000106993 CDS Human protein_coding chr9:4697148 chr9:4697161 stopgain 1.000 1 34 hm5C_associated_SNPs_39087 0 0 1 0 2 CDC37L1 chr9:4697096 3'AG 4697096 Downstream 66bp
chr9 4697161 4697161 1 + G T UCEC 4697148 + 4697128 4697168 41 TTTTTGTCTGACCATCCATACCTTGTATGTGAAGAAACTGC TTTTTGTCTGACCATCCATACCTTGTATGTGAATAAACTGC < 41bp 1 0.051169291709529 1 0.0489274859428406 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC37L1 ENSG00000106993 CDS Human protein_coding chr9:4697148 chr9:4697161 stopgain 1.000 1 34 hm5C_associated_SNPs_39087 0 0 1 0 2 CDC37L1 chr9:4697211 5'GT 4697211 Upstream 51bp
chr3 123348380 123348380 1 + G A UCEC 123348379 + 123348359 123348399 41 GGCATCGTCGGAGATCTCATCGAATGCCTCGTCGTCGAAGT GGCATCGTCGGAGATCTCATCAAATGCCTCGTCGTCGAAGT < 41bp 1 0.494598363774074 1 0.367176234722137 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYLK ENSG00000065534 CDS Human protein_coding chr3:123348379 chr3:123348380 synonymous SNV . 0 22 hm5C_associated_SNPs_39089 1 0 0 0 1 MYLK chr3:123348341 3'AG 123348341 Downstream 40bp
chrX 123229247 123229247 1 + G T UCEC 123229250 + 123229230 123229270 41 AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT AAAGAACAGACGAGAGATAACAGAACTGAAGCCTGATTTCT < 41bp 1 0.586192527567118 1 0.596678912639618 experiment 0.827614944865764 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123229250 chrX:123229247 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_39090 0 0 1 0 2 STAG2 chrX:123229222 3'AG 123229222 Downstream 26bp
chrX 123229247 123229247 1 + G T UCEC 123229250 + 123229230 123229270 41 AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT AAAGAACAGACGAGAGATAACAGAACTGAAGCCTGATTTCT < 41bp 1 0.586192527567118 1 0.596678912639618 experiment 0.827614944865764 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123229250 chrX:123229247 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_39090 0 0 1 0 2 STAG2 chrX:123229299 5'GT 123229299 Upstream 53bp
chr16 50261756 50261756 1 + G A UCEC 50261765 + 50261745 50261785 41 GTTAGGATTCCGATGCAACACCATGCAAAACCCCGAAACAG GTTAGGATTCCAATGCAACACCATGCAAAACCCCGAAACAG < 41bp 1 0.194655960407818 1 0.622231781482697 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAPD5 ENSG00000121274 CDS Human protein_coding chr16:50261765 chr16:50261756 nonsynonymous SNV 0.996 4 12 hm5C_associated_SNPs_39091 0 0 1 1 1 PAPD5 chr16:50261750 3'AG 50261750 Downstream 7bp
chr10 73567715 73567715 1 + C A UCEC 73567716 + 73567696 73567736 41 TTCTGGCCATCCACTACTTCCGGGCCCTTGCCAACGACTCT TTCTGGCCATCCACTACTTACGGGCCCTTGCCAACGACTCT < 41bp 1 0.200164531805856 1 0.759044885635376 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH23 ENSG00000107736 CDS Human protein_coding chr10:73567716 chr10:73567715 nonsynonymous SNV 0.999 1 20 hm5C_associated_SNPs_39092 0 0 0 0 1 CDH23 chr10:73567764 5'GT 73567764 Upstream 50bp
chr18 34289064 34289064 1 + C T UCEC 34289065 + 34289045 34289085 41 TTGTCTCCACCAGCAAGTGCCGGGGATCCTGAACCCGAATC TTGTCTCCACCAGCAAGTGTCGGGGATCCTGAACCCGAATC < 41bp 1 0.68498402966968 1 0.901327192783356 experiment 0.63003194066064 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34289065 chr18:34289064 nonsynonymous SNV 0.047 0 20 hm5C_associated_SNPs_39093 0 0 0 0 1 FHOD3 chr18:34289058 3'AG 34289058 Downstream 7bp
chr11 61915976 61915976 1 + C T UCEC 61915982 + 61915962 61916002 41 GGGAGAAGGCCCTGCGGCTGCAGAAGGAGCAGCTGCAGAGG GGGAGAAGGCCCTGTGGCTGCAGAAGGAGCAGCTGCAGAGG < 41bp 1 0.725529732446555 1 0.508686363697052 experiment 0.54894053510689 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61915982 chr11:61915976 nonsynonymous SNV 0.926 2 15 hm5C_associated_SNPs_39100 0 0 1 0 1 INCENP chr11:61915948 3'AG 61915948 Downstream 29bp
chr11 61915976 61915976 1 + C T UCEC 61915991 + 61915971 61916011 41 CCCTGCGGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAG CCCTGTGGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAG < 41bp 1 0.260120184871634 1 0.277056813240051 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61915991 chr11:61915976 nonsynonymous SNV 0.926 2 6 hm5C_associated_SNPs_39101 0 0 1 0 1 INCENP chr11:61915948 3'AG 61915948 Downstream 29bp
chr11 61915976 61915976 1 + C T UCEC 61915994 + 61915974 61916014 41 TGCGGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAGGAG TGTGGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAGGAG < 41bp 1 0.652723448515205 1 0.783992767333984 experiment 0.69455310296959 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61915994 chr11:61915976 nonsynonymous SNV 0.926 2 3 hm5C_associated_SNPs_39102 0 0 1 0 1 INCENP chr11:61915948 3'AG 61915948 Downstream 29bp
chr9 137987802 137987802 1 + A G UCEC 137987790 + 137987770 137987810 41 TACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTC TACGTGGAGAAGATGGAGAACCAAATGAAAGGGCTGGAGTC < 41bp 1 0.27477309657909 1 0.277300417423248 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137987790 chr9:137987802 synonymous SNV . 0 33 hm5C_associated_SNPs_39105 0 0 1 0 2 OLFM1 chr9:137987710 3'AG 137987710 Downstream 93bp
chr9 137987802 137987802 1 + A G UCEC 137987790 + 137987770 137987810 41 TACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTC TACGTGGAGAAGATGGAGAACCAAATGAAAGGGCTGGAGTC < 41bp 1 0.27477309657909 1 0.277300417423248 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137987790 chr9:137987802 synonymous SNV . 0 33 hm5C_associated_SNPs_39105 0 0 1 0 2 OLFM1 chr9:137987865 5'GT 137987865 Upstream 64bp
chr9 137987802 137987802 1 + A G UCEC 137987791 + 137987771 137987811 41 ACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTCC ACGTGGAGAAGATGGAGAACCAAATGAAAGGGCTGGAGTCC < 41bp 1 0.397897610837029 1 0.680876791477203 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137987791 chr9:137987802 synonymous SNV . 0 32 hm5C_associated_SNPs_39106 0 0 1 0 2 OLFM1 chr9:137987710 3'AG 137987710 Downstream 93bp
chr9 137987802 137987802 1 + A G UCEC 137987791 + 137987771 137987811 41 ACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTCC ACGTGGAGAAGATGGAGAACCAAATGAAAGGGCTGGAGTCC < 41bp 1 0.397897610837029 1 0.680876791477203 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137987791 chr9:137987802 synonymous SNV . 0 32 hm5C_associated_SNPs_39106 0 0 1 0 2 OLFM1 chr9:137987865 5'GT 137987865 Upstream 64bp
chr17 78704404 78704404 1 + G A UCEC 78704396 + 78704376 78704416 41 TCCCTCTGTCCATATATGACCTGCAGACGTGGATGGGCAGC TCCCTCTGTCCATATATGACCTGCAGACATGGATGGGCAGC < 41bp 1 0.431056795949966 1 0.0769566595554352 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPTOR ENSG00000141564 CDS Human protein_coding chr17:78704396 chr17:78704404 synonymous SNV . 0 29 hm5C_associated_SNPs_39107 0 0 1 0 1 RPTOR chr17:78704360 3'AG 78704360 Downstream 45bp
chr3 37407581 37407581 1 + G A UCEC 37407590 + 37407570 37407610 41 GTCATGGCTCCGATCTTCATCTTGAAGAAGAGTGACATTGG GTCATGGCTCCAATCTTCATCTTGAAGAAGAGTGACATTGG < 41bp 1 0.609305716866305 1 0.567752242088318 experiment 0.781388566267391 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37407590 chr3:37407581 nonsynonymous SNV 0.983 3 12 hm5C_associated_SNPs_39108 0 0 1 0 1 GOLGA4 chr3:37407571 3'AG 37407571 Downstream 11bp
chr1 10221244 10221244 1 + A G UCEC 10221247 + 10221227 10221267 41 AAACATGTTGATAAACGACACGACGTTTTTGCTCGATGAAA AAACATGTTGATAAACGGCACGACGTTTTTGCTCGATGAAA < 41bp 1 0.233769591245126 1 0.0923228561878204 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10221247 chr1:10221244 nonsynonymous SNV 0.924 4 18 hm5C_associated_SNPs_39109 0 0 0 0 1 UBE4B chr1:10221200 3'AG 10221200 Downstream 45bp
chr3 184038427 184038427 1 + C T UCEC 184038413 + 184038393 184038433 41 TCATCTTATAGCTTTCTTTCCCCAGATCCGAATTCGAGATC TCATCTTATAGCTTTCTTTCCCCAGATCCGAATTTGAGATC < 41bp 1 0.144796623428439 1 0.470406532287598 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184038413 chr3:184038427 stopgain 1.000 1 35 hm5C_associated_SNPs_39110 0 0 1 0 1 EIF4G1 chr3:184038418 3'AG 184038418 Downstream 10bp
chr2 152276723 152276723 1 + A C UCEC 152276742 + 152276722 152276762 41 AATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAACTGG ACTTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAACTGG < 41bp 1 0.34530248300135 1 0.194058030843735 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RIF1 ENSG00000080345 CDS Human protein_coding chr2:152276742 chr2:152276723 nonsynonymous SNV 0.944 0 2 hm5C_associated_SNPs_39111 0 0 1 1 1 RIF1 chr2:152276704 3'AG 152276704 Downstream 20bp
chr14 96997912 96997912 1 + G T UCEC 96997917 + 96997897 96997937 41 ATATAAGATGTATAAGAAGTCTTAACGGTATGAGAAAGCCT ATATAAGATGTATAATAAGTCTTAACGGTATGAGAAAGCCT < 41bp 1 0.241120318750875 1 0.117374002933502 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:96997917 chr14:96997912 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_39112 0 0 1 0 1 PAPOLA chr14:96997923 5'GT 96997923 Upstream 12bp
chr20 17956512 17956512 1 + T G UCEC 17956504 + 17956484 17956524 41 AAGTGCTGTTCAACATGAAACCTTAAACTATATAGGTCTGC AAGTGCTGTTCAACATGAAACCTTAAACGATATAGGTCTGC < 41bp 1 0.112431116511372 1 0.14197501540184 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MGME1 ENSG00000125871 CDS Human protein_coding chr20:17956504 chr20:17956512 nonsynonymous SNV 0.351 4 29 hm5C_associated_SNPs_39113 0 0 1 0 1 MGME1 chr20:17956546 5'GT 17956546 Upstream 35bp
chr5 149756155 149756155 1 + G A UCEC 149756135 + 149756115 149756155 41 AAGCAGGAAGACTCTGAGAGCAGTGAGGAGGAATCAGACAG AAGCAGGAAGACTCTGAGAGCAGTGAGGAGGAATCAGACAA < 41bp 1 0.295137142992224 1 0.239847272634506 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149756135 chr5:149756155 nonsynonymous SNV 0.093 0 41 hm5C_associated_SNPs_39114 0 0 1 0 1 TCOF1 chr5:149756183 5'GT 149756183 Upstream 29bp
chr5 149756155 149756155 1 + G A UCEC 149756153 + 149756133 149756173 41 AGCAGTGAGGAGGAATCAGACAGTGAGGAAGCAGCTGCATC AGCAGTGAGGAGGAATCAGACAATGAGGAAGCAGCTGCATC < 41bp 1 0.287611239230804 1 0.48436039686203 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149756153 chr5:149756155 nonsynonymous SNV 0.093 0 23 hm5C_associated_SNPs_39115 0 0 1 0 1 TCOF1 chr5:149756183 5'GT 149756183 Upstream 29bp
chr19 4359979 4359979 1 + G A UCEC 4359996 + 4359976 4360016 41 GGCGTCCTCAAGCAGGGGAGCTGAGCCTTCCAGGGCAGGGT GGCATCCTCAAGCAGGGGAGCTGAGCCTTCCAGGGCAGGGT < 41bp 1 0.305003822228229 1 0.370726525783539 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MPND ENSG00000008382 CDS Human protein_coding chr19:4359996 chr19:4359979 nonsynonymous SNV 0.000 0 4 hm5C_associated_SNPs_39116 0 0 1 0 1 MPND chr19:4359913 3'AG 4359913 Downstream 67bp
chr22 25570261 25570261 1 + C T UCEC 25570257 + 25570237 25570277 41 CACATCGACAAGGAAACAGCCCCCCAGCAGCCGTTTGTCTT CACATCGACAAGGAAACAGCCCCCTAGCAGCCGTTTGTCTT < 41bp 1 0.0610027166978865 1 0.0303841531276703 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KIAA1671 ENSG00000197077 CDS Human protein_coding chr22:25570257 chr22:25570261 synonymous SNV . 0 25 hm5C_associated_SNPs_39117 0 0 0 0 1 KIAA1671 chr22:25570207 3'AG 25570207 Downstream 55bp
chr16 675955 675955 1 + G A UCEC 675974 + 675954 675994 41 AGCGGCAGGTCCCGACGGAGCAGGCCCGCGCGTACGCAGAG AACGGCAGGTCCCGACGGAGCAGGCCCGCGCGTACGCAGAG < 41bp 1 0.532934166769487 1 0.711106538772583 experiment 0.934131666461026 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C;RAB40C ENSG00000197562;ENSG00000197562 exonic;splicing Human protein_coding chr16:675974 chr16:675955 synonymous SNV . 0 2 hm5C_associated_SNPs_39118 0 0 1 0 1 RAB40C chr16:675899 3'AG 675899 Downstream 57bp
chr8 145535491 145535491 1 + A G UCEC 145535495 + 145535475 145535515 41 GGCTCCTGCCAGCCCCATGGCCTCCCCCGGCGGGAGCATAG GGCTCCTGCCAGCCCCGTGGCCTCCCCCGGCGGGAGCATAG < 41bp 1 0.0293277770083631 1 0.0672605931758881 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSF1 ENSG00000185122 CDS Human protein_coding chr8:145535495 chr8:145535491 nonsynonymous SNV 0.026 0 17 hm5C_associated_SNPs_39119 0 0 1 0 1 HSF1 chr8:145535522 5'GT 145535522 Upstream 32bp
chr17 65739901 65739901 1 + C T UCEC 65739907 + 65739887 65739927 41 TTGAAGTAAGTTTTCGGGAGCTACAGAAATTAAATCAAGAA TTGAAGTAAGTTTTTGGGAGCTACAGAAATTAAATCAAGAA < 41bp 1 0.431470735580453 1 0.422717303037643 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65739907 chr17:65739901 nonsynonymous SNV 0.997 3 15 hm5C_associated_SNPs_39120 0 0 1 0 1 NOL11 chr17:65739859 3'AG 65739859 Downstream 43bp
chr2 32958954 32958954 1 + C A UCEC 32958943 + 32958923 32958963 41 CTACATCTGTATTGGAACGCCTGAAGATTTTCTATTGCTGT CTACATCTGTATTGGAACGCCTGAAGATTTTATATTGCTGT < 41bp 1 0.552216926022257 1 0.521162152290344 experiment 0.895566147955485 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32958943 chr2:32958954 nonsynonymous SNV 0.995 1 32 hm5C_associated_SNPs_39121 0 0 1 0 2 TTC27 chr2:32958895 3'AG 32958895 Downstream 60bp
chr2 32958954 32958954 1 + C A UCEC 32958943 + 32958923 32958963 41 CTACATCTGTATTGGAACGCCTGAAGATTTTCTATTGCTGT CTACATCTGTATTGGAACGCCTGAAGATTTTATATTGCTGT < 41bp 1 0.552216926022257 1 0.521162152290344 experiment 0.895566147955485 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32958943 chr2:32958954 nonsynonymous SNV 0.995 1 32 hm5C_associated_SNPs_39121 0 0 1 0 2 TTC27 chr2:32958990 5'GT 32958990 Upstream 37bp
chr1 32691802 32691802 1 + C T UCEC 32691784 + 32691764 32691804 41 GACTCCAGGAAAGCAGCTGGCCCTTCTCAAGACCAATTCGG GACTCCAGGAAAGCAGCTGGCCCTTCTCAAGACCAATTTGG < 41bp 1 0.129330547984019 1 0.0177480280399323 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF3I ENSG00000084623 CDS Human protein_coding chr1:32691784 chr1:32691802 nonsynonymous SNV 0.996 4 39 hm5C_associated_SNPs_39122 0 0 1 0 1 EIF3I chr1:32691772 3'AG 32691772 Downstream 31bp
chr7 135329740 135329740 1 + G A UCEC 135329743 + 135329723 135329763 41 GAAGGTGATCAACAATCGAGCTAAACTGCTTTCCCTTTGTT GAAGGTGATCAACAATCAAGCTAAACTGCTTTCCCTTTGTT < 41bp 1 0.287496829106688 1 0.115222960710526 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135329743 chr7:135329740 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_39123 0 0 1 0 2 NUP205 chr7:135329643 3'AG 135329643 Downstream 98bp
chr7 135329740 135329740 1 + G A UCEC 135329743 + 135329723 135329763 41 GAAGGTGATCAACAATCGAGCTAAACTGCTTTCCCTTTGTT GAAGGTGATCAACAATCAAGCTAAACTGCTTTCCCTTTGTT < 41bp 1 0.287496829106688 1 0.115222960710526 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135329743 chr7:135329740 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_39123 0 0 1 0 2 NUP205 chr7:135329766 5'GT 135329766 Upstream 27bp
chr3 9870695 9870695 1 + C T UCEC 9870706 + 9870686 9870726 41 GAACTCATGCCATCGGCATCCACTGCTTCCGCCAGACAACA GAACTCATGTCATCGGCATCCACTGCTTCCGCCAGACAACA < 41bp 1 0.263479224983234 1 0.481052219867706 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARPC4-TTLL3;TTLL3 ENSG00000214021;ENSG00000250151 CDS Human other chr3:9870706 chr3:9870695 synonymous SNV . 0 10 hm5C_associated_SNPs_39124 0 0 1 0 1 ARPC4-TTLL3;TTLL3 chr3:9870644 3'AG 9870644 Downstream 52bp
chr1 240492733 240492733 1 + C T UCEC 240492713 + 240492693 240492733 41 CCTGTTCCAGTCCACATTTTCAGAAAGCATTTGCTCAATTC CCTGTTCCAGTCCACATTTTCAGAAAGCATTTGCTCAATTT < 41bp 1 0.502186491645285 1 0.769039392471313 experiment 0.99562701670943 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FMN2 ENSG00000155816 CDS Human protein_coding chr1:240492713 chr1:240492733 nonsynonymous SNV 0.998 2 41 hm5C_associated_SNPs_39125 0 0 0 0 2 FMN2 chr1:240492639 3'AG 240492639 Downstream 95bp
chr1 240492733 240492733 1 + C T UCEC 240492713 + 240492693 240492733 41 CCTGTTCCAGTCCACATTTTCAGAAAGCATTTGCTCAATTC CCTGTTCCAGTCCACATTTTCAGAAAGCATTTGCTCAATTT < 41bp 1 0.502186491645285 1 0.769039392471313 experiment 0.99562701670943 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FMN2 ENSG00000155816 CDS Human protein_coding chr1:240492713 chr1:240492733 nonsynonymous SNV 0.998 2 41 hm5C_associated_SNPs_39125 0 0 0 0 2 FMN2 chr1:240492768 5'GT 240492768 Upstream 36bp
chr11 44193272 44193272 1 + T C UCEC 44193285 + 44193265 44193305 41 TGAAGAATGGAATGACCCTCCTGCTGTGGTAAGTGAATTCC TGAAGAACGGAATGACCCTCCTGCTGTGGTAAGTGAATTCC < 41bp 1 0.531941871448385 1 0.359388530254364 experiment 0.936116257103231 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44193285 chr11:44193272 nonsynonymous SNV 1.000 5 8 hm5C_associated_SNPs_39128 0 0 1 0 2 EXT2 chr11:44193224 3'AG 44193224 Downstream 49bp
chr11 44193272 44193272 1 + T C UCEC 44193285 + 44193265 44193305 41 TGAAGAATGGAATGACCCTCCTGCTGTGGTAAGTGAATTCC TGAAGAACGGAATGACCCTCCTGCTGTGGTAAGTGAATTCC < 41bp 1 0.531941871448385 1 0.359388530254364 experiment 0.936116257103231 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44193285 chr11:44193272 nonsynonymous SNV 1.000 5 8 hm5C_associated_SNPs_39128 0 0 1 0 2 EXT2 chr11:44193292 5'GT 44193292 Upstream 21bp
chr1 120286511 120286511 1 + C T UCEC 120286510 + 120286490 120286530 41 GAGTTTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGT GAGTTTCTTCTATTTCCAGGCTTCCTGGCAGAGGCAGGCGT < 41bp 1 0.0871436806218148 1 0.215129405260086 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286510 chr1:120286511 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_39132 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 3bp
chr1 120286511 120286511 1 + C T UCEC 120286513 + 120286493 120286533 41 TTTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTGCG TTTCTTCTATTTCCAGGCTTCCTGGCAGAGGCAGGCGTGCG < 41bp 1 0.186270568831333 1 0.107605159282684 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286513 chr1:120286511 nonsynonymous SNV 1.000 3 19 hm5C_associated_SNPs_39133 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 3bp
chr1 120286511 120286511 1 + C T UCEC 120286514 + 120286494 120286534 41 TTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTGCGG TTCTTCTATTTCCAGGCTTCCTGGCAGAGGCAGGCGTGCGG < 41bp 1 0.535569396018314 1 0.137242883443832 experiment 0.928861207963372 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286514 chr1:120286511 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_39134 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 3bp
chr1 120286511 120286511 1 + C T UCEC 120286518 + 120286498 120286538 41 TCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTGCGGCTGC TCTATTTCCAGGCTTCCTGGCAGAGGCAGGCGTGCGGCTGC < 41bp 1 0.694087188655133 1 0.887699007987976 experiment 0.611825622689734 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286518 chr1:120286511 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_39135 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 3bp
chr10 118313334 118313334 1 + C A UCEC 118313333 + 118313313 118313353 41 TGGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTT TGGAAGGAGAACCAATGGGACAATTGGACGCATCACAGGTT < 41bp 1 0.311406472563789 1 0.10396009683609 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313333 chr10:118313334 synonymous SNV . 0 22 hm5C_associated_SNPs_39136 0 0 0 0 2 PNLIP chr10:118313239 3'AG 118313239 Downstream 96bp
chr10 118313334 118313334 1 + C A UCEC 118313333 + 118313313 118313353 41 TGGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTT TGGAAGGAGAACCAATGGGACAATTGGACGCATCACAGGTT < 41bp 1 0.311406472563789 1 0.10396009683609 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313333 chr10:118313334 synonymous SNV . 0 22 hm5C_associated_SNPs_39136 0 0 0 0 2 PNLIP chr10:118313350 5'GT 118313350 Upstream 17bp
chrX 69354375 69354375 1 + G A UCEC 69354374 + 69354354 69354394 41 CTCCTTTTTGCTCTTCCAGCCGAAATGAAGATTTGGAAGAG CTCCTTTTTGCTCTTCCAGCCAAAATGAAGATTTGGAAGAG < 41bp 1 0.500958433116657 1 0.750109672546387 experiment 0.998083133766686 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69354374 chrX:69354375 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_39138 0 0 1 0 1 IGBP1 chrX:69354373 3'AG 69354373 Downstream 3bp
chr20 43545442 43545442 1 + T G UCEC 43545459 + 43545439 43545479 41 CATTTTGAGACCCATGAGGCCGCACAGCAGGCCATCAACAC CATGTTGAGACCCATGAGGCCGCACAGCAGGCCATCAACAC < 41bp 1 0.240012861260771 1 0.022765576839447 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545459 chr20:43545442 nonsynonymous SNV 0.572 4 4 hm5C_associated_SNPs_39139 0 0 1 0 1 PABPC1L chr20:43545397 3'AG 43545397 Downstream 46bp
chr17 7813831 7813831 1 + C T UCEC 7813827 + 7813807 7813847 41 CACGCTGTCCCGAATACCCCCCATCGCAGCCCGCCTTCAGA CACGCTGTCCCGAATACCCCCCATTGCAGCCCGCCTTCAGA < 41bp 1 0.0415974051512637 1 0.0744256377220154 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7813827 chr17:7813831 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_39140 0 0 0 0 2 CHD3 chr17:7813746 3'AG 7813746 Downstream 86bp
chr17 7813831 7813831 1 + C T UCEC 7813827 + 7813807 7813847 41 CACGCTGTCCCGAATACCCCCCATCGCAGCCCGCCTTCAGA CACGCTGTCCCGAATACCCCCCATTGCAGCCCGCCTTCAGA < 41bp 1 0.0415974051512637 1 0.0744256377220154 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7813827 chr17:7813831 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_39140 0 0 0 0 2 CHD3 chr17:7813909 5'GT 7813909 Upstream 79bp
chr17 7813831 7813831 1 + C T UCEC 7813828 + 7813808 7813848 41 ACGCTGTCCCGAATACCCCCCATCGCAGCCCGCCTTCAGAT ACGCTGTCCCGAATACCCCCCATTGCAGCCCGCCTTCAGAT < 41bp 1 0.0746567350049 1 0.108549684286118 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7813828 chr17:7813831 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_39141 0 0 0 0 2 CHD3 chr17:7813746 3'AG 7813746 Downstream 86bp
chr17 7813831 7813831 1 + C T UCEC 7813828 + 7813808 7813848 41 ACGCTGTCCCGAATACCCCCCATCGCAGCCCGCCTTCAGAT ACGCTGTCCCGAATACCCCCCATTGCAGCCCGCCTTCAGAT < 41bp 1 0.0746567350049 1 0.108549684286118 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7813828 chr17:7813831 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_39141 0 0 0 0 2 CHD3 chr17:7813909 5'GT 7813909 Upstream 79bp
chr1 154306691 154306691 1 + G A UCEC 154306671 + 154306651 154306691 41 AATAAGTTCCCTCTGAGCAACCAGAACATGCTGCTGCGGGG AATAAGTTCCCTCTGAGCAACCAGAACATGCTGCTGCGGGA < 41bp 1 0.36317265318738 1 0.337302565574646 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154306671 chr1:154306691 nonsynonymous SNV 0.987 5 41 hm5C_associated_SNPs_39142 0 0 1 0 1 ATP8B2 chr1:154306741 5'GT 154306741 Upstream 51bp
chr11 108205734 108205734 1 + A G UCEC 108205739 + 108205719 108205759 41 AAATCTGGTGACTATACAGTCATTTAAAGCAGAATTTCGCT AAATCTGGTGACTATGCAGTCATTTAAAGCAGAATTTCGCT < 41bp 1 0.0250604258965392 1 0.0852408409118652 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108205739 chr11:108205734 nonsynonymous SNV 0.947 3 16 hm5C_associated_SNPs_39143 0 0 1 0 1 ATM chr11:108205696 3'AG 108205696 Downstream 39bp
chrX 70779260 70779260 1 + T C UCEC 70779251 + 70779231 70779271 41 CTTATGCAGTCTATTCCAGGCATGCACAATCCTGATAAATT CTTATGCAGTCTATTCCAGGCATGCACAACCCTGATAAATT < 41bp 1 0.0759609715108386 1 0.0736028254032135 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70779251 chrX:70779260 synonymous SNV . 0 30 hm5C_associated_SNPs_39144 0 0 1 0 1 OGT chrX:70779275 5'GT 70779275 Upstream 16bp
chr1 150483648 150483648 1 + A G UCEC 150483635 + 150483615 150483655 41 TATTCCCGCTGCTGCCACTGCCGCAGCCACACAAACCGCCT TATTCCCGCTGCTGCCACTGCCGCAGCCACACAGACCGCCT < 41bp 1 0.649876492846265 1 0.614895939826965 experiment 0.700247014307471 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ECM1 ENSG00000143369 CDS Human protein_coding chr1:150483635 chr1:150483648 nonsynonymous SNV 0.773 0 34 hm5C_associated_SNPs_39145 0 0 1 0 1 ECM1 chr1:150483674 5'GT 150483674 Upstream 27bp
chr7 36464171 36464171 1 + A G UCEC 36464155 + 36464135 36464175 41 TAATGCTTTATTTTTCCAGGCAAGATGTATCCAATGACTTT TAATGCTTTATTTTTCCAGGCAAGATGTATCCAATGGCTTT < 41bp 1 0.402119623335353 1 0.205767095088959 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36464155 chr7:36464171 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_39146 0 0 1 0 2 ANLN chr7:36464154 3'AG 36464154 Downstream 18bp
chr7 36464171 36464171 1 + A G UCEC 36464155 + 36464135 36464175 41 TAATGCTTTATTTTTCCAGGCAAGATGTATCCAATGACTTT TAATGCTTTATTTTTCCAGGCAAGATGTATCCAATGGCTTT < 41bp 1 0.402119623335353 1 0.205767095088959 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36464155 chr7:36464171 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_39146 0 0 1 0 2 ANLN chr7:36464202 5'GT 36464202 Upstream 32bp
chr14 103805657 103805657 1 + G A UCEC 103805638 + 103805618 103805658 41 TTAATGAGAAGATTAGAGAACAGATTAAGAAATACAGGCGC TTAATGAGAAGATTAGAGAACAGATTAAGAAATACAGGCAC < 41bp 1 0.438679199029158 1 0.243257015943527 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103805638 chr14:103805657 nonsynonymous SNV 0.998 1 40 hm5C_associated_SNPs_39147 0 0 1 0 1 EIF5 chr14:103805670 5'GT 103805670 Upstream 14bp
chr14 103805657 103805657 1 + G A UCEC 103805668 + 103805648 103805688 41 AATACAGGCGCCATTTCCTACGAGTAAGCAAAGTGCTCTGG AATACAGGCACCATTTCCTACGAGTAAGCAAAGTGCTCTGG < 41bp 1 0.434442540291888 1 0.449049860239029 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103805668 chr14:103805657 nonsynonymous SNV 0.998 1 10 hm5C_associated_SNPs_39148 0 0 1 0 1 EIF5 chr14:103805670 5'GT 103805670 Upstream 14bp
chr17 46133897 46133897 1 + C T UCEC 46133913 + 46133893 46133933 41 AGGGCGCGGAAGCTCTGGCACGGAACCTGCTAGTGGATGGA AGGGTGCGGAAGCTCTGGCACGGAACCTGCTAGTGGATGGA < 41bp 1 0.682779616723045 1 0.449921548366547 experiment 0.634440766553909 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46133913 chr17:46133897 synonymous SNV . 0 5 hm5C_associated_SNPs_39149 0 0 1 0 1 NFE2L1 chr17:46133960 5'GT 46133960 Upstream 64bp
chr1 39908223 39908223 1 + A T UCEC 39908204 + 39908184 39908224 41 AGAGACCAATAAGTGGAGACCCAAAAGTCATTGAAGTTGAG AGAGACCAATAAGTGGAGACCCAAAAGTCATTGAAGTTGTG < 41bp 1 0.0573349000850872 1 0.274378389120102 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39908204 chr1:39908223 nonsynonymous SNV 0.984 4 40 hm5C_associated_SNPs_39150 0 0 1 0 1 MACF1 chr1:39908239 5'GT 39908239 Upstream 17bp
chr17 16329465 16329465 1 + G A UCEC 16329457 + 16329437 16329477 41 GAGTTTTCAGGACTGAGCCACCTTTCCCGAAAGTTCACCGA GAGTTTTCAGGACTGAGCCACCTTTCCCAAAAGTTCACCGA < 41bp 1 0.00836038181077145 1 0.0541853308677673 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16329457 chr17:16329465 nonsynonymous SNV 0.992 5 29 hm5C_associated_SNPs_39151 0 0 0 0 1 TRPV2 chr17:16329413 3'AG 16329413 Downstream 53bp
chr19 42839481 42839481 1 + G A UCEC 42839497 + 42839477 42839517 41 CCTCGTCCTATACAACTTCTCCGCCAACACCTGGGAGTCTT CCTCATCCTATACAACTTCTCCGCCAACACCTGGGAGTCTT < 41bp 1 0.103749574503505 1 0.354186534881592 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42839497 chr19:42839481 nonsynonymous SNV 0.958 0 5 hm5C_associated_SNPs_39152 0 0 1 0 2 MEGF8 chr19:42839449 3'AG 42839449 Downstream 33bp
chr19 42839481 42839481 1 + G A UCEC 42839497 + 42839477 42839517 41 CCTCGTCCTATACAACTTCTCCGCCAACACCTGGGAGTCTT CCTCATCCTATACAACTTCTCCGCCAACACCTGGGAGTCTT < 41bp 1 0.103749574503505 1 0.354186534881592 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42839497 chr19:42839481 nonsynonymous SNV 0.958 0 5 hm5C_associated_SNPs_39152 0 0 1 0 2 MEGF8 chr19:42839537 5'GT 42839537 Upstream 57bp
chr17 18057169 18057169 1 + G T UCEC 18057159 + 18057139 18057179 41 CTGCACCGCCTCATCAATCCCAACTTCTACGGCTATCAGGA CTGCACCGCCTCATCAATCCCAACTTCTACTGCTATCAGGA < 41bp 1 0.118325977544461 1 0.315932035446167 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MYO15A ENSG00000091536 CDS Human protein_coding chr17:18057159 chr17:18057169 nonsynonymous SNV 0.996 3 31 hm5C_associated_SNPs_39153 0 0 0 0 1 MYO15A chr17:18057210 5'GT 18057210 Upstream 42bp
chr17 60768382 60768382 1 + G A UCEC 60768363 + 60768343 60768383 41 TGAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGC TGAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAAC < 41bp 1 0.0340502541825043 1 0.248682647943497 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768363 chr17:60768382 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_39155 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 73bp
chr17 60768382 60768382 1 + G A UCEC 60768364 + 60768344 60768384 41 GAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGCA GAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAACA < 41bp 1 0.11703079977501 1 0.548455834388733 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768364 chr17:60768382 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_39156 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 73bp
chr17 60768382 60768382 1 + G A UCEC 60768365 + 60768345 60768385 41 AACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGCAT AACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAACAT < 41bp 1 0.244329358681904 1 0.748599886894226 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768365 chr17:60768382 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_39157 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 73bp
chr17 60768382 60768382 1 + G A UCEC 60768377 + 60768357 60768397 41 TGGGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAA TGGGGGCCCCCGGGCTTGGGCCCCAACATGCTGAGCCACAA < 41bp 1 0.335400513864774 1 0.314747601747513 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768377 chr17:60768382 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_39158 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 73bp
chr17 60768382 60768382 1 + G A UCEC 60768378 + 60768358 60768398 41 GGGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAAC GGGGGCCCCCGGGCTTGGGCCCCAACATGCTGAGCCACAAC < 41bp 1 0.202293265215681 1 0.370629847049713 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768378 chr17:60768382 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_39159 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 73bp
chr17 60768382 60768382 1 + G A UCEC 60768379 + 60768359 60768399 41 GGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACA GGGGCCCCCGGGCTTGGGCCCCAACATGCTGAGCCACAACA < 41bp 1 0.032497501856234 1 0.155040889978409 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768379 chr17:60768382 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_39160 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 73bp
chr17 60768382 60768382 1 + G A UCEC 60768380 + 60768360 60768400 41 GGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACAG GGGCCCCCGGGCTTGGGCCCCAACATGCTGAGCCACAACAG < 41bp 1 0.501861067867834 1 0.383727848529816 experiment 0.996277864264332 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768380 chr17:60768382 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_39161 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 73bp
chr16 31473288 31473288 1 + C T UCEC 31473271 + 31473251 31473291 41 CTTCAGTGCATGAAGACAGACAGCATCCAGAACCGAACGGC CTTCAGTGCATGAAGACAGACAGCATCCAGAACCGAATGGC < 41bp 1 0.645747450230737 1 0.467088848352432 experiment 0.708505099538527 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARMC5 ENSG00000140691 CDS Human protein_coding chr16:31473271 chr16:31473288 nonsynonymous SNV 0.996 3 38 hm5C_associated_SNPs_39163 0 0 1 0 2 ARMC5 chr16:31473243 3'AG 31473243 Downstream 46bp
chr16 31473288 31473288 1 + C T UCEC 31473271 + 31473251 31473291 41 CTTCAGTGCATGAAGACAGACAGCATCCAGAACCGAACGGC CTTCAGTGCATGAAGACAGACAGCATCCAGAACCGAATGGC < 41bp 1 0.645747450230737 1 0.467088848352432 experiment 0.708505099538527 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARMC5 ENSG00000140691 CDS Human protein_coding chr16:31473271 chr16:31473288 nonsynonymous SNV 0.996 3 38 hm5C_associated_SNPs_39163 0 0 1 0 2 ARMC5 chr16:31473350 5'GT 31473350 Upstream 63bp
chr1 37947348 37947348 1 + G T UCEC 37947350 + 37947330 37947370 41 GGGATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGG GGGATCGTGGTTTCCAACTACACATACCGTGACCTCCAAGG < 41bp 1 0.296120127870571 1 0.114681631326675 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947350 chr1:37947348 nonsynonymous SNV 0.988 4 19 hm5C_associated_SNPs_39164 0 0 0 0 1 ZC3H12A chr1:37947436 5'GT 37947436 Upstream 89bp
chr1 37947348 37947348 1 + G T UCEC 37947352 + 37947332 37947372 41 GATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGGCG GATCGTGGTTTCCAACTACACATACCGTGACCTCCAAGGCG < 41bp 1 0.189957471064676 1 0.0656099021434784 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947352 chr1:37947348 nonsynonymous SNV 0.988 4 17 hm5C_associated_SNPs_39165 0 0 0 0 1 ZC3H12A chr1:37947436 5'GT 37947436 Upstream 89bp
chrX 131202518 131202518 1 + A G UCEC 131202534 + 131202514 131202554 41 ACACAGATTAAAAGAAATACCTTTGTGGGAACTCCATTTTG ACACGGATTAAAAGAAATACCTTTGTGGGAACTCCATTTTG < 41bp 1 0.406184714085967 1 0.0385285317897797 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STK26 ENSG00000134602 CDS Human protein_coding chrX:131202534 chrX:131202518 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_39166 0 0 1 0 2 STK26 chrX:131202440 3'AG 131202440 Downstream 79bp
chrX 131202518 131202518 1 + A G UCEC 131202534 + 131202514 131202554 41 ACACAGATTAAAAGAAATACCTTTGTGGGAACTCCATTTTG ACACGGATTAAAAGAAATACCTTTGTGGGAACTCCATTTTG < 41bp 1 0.406184714085967 1 0.0385285317897797 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STK26 ENSG00000134602 CDS Human protein_coding chrX:131202534 chrX:131202518 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_39166 0 0 1 0 2 STK26 chrX:131202597 5'GT 131202597 Upstream 80bp
chr2 99182154 99182154 1 + G T UCEC 99182143 + 99182123 99182163 41 GAGGACATGAGCCTTGGGATCATGGACTTGAGGAACGTGAC GAGGACATGAGCCTTGGGATCATGGACTTGATGAACGTGAC < 41bp 1 0.448209830075695 1 0.223322868347168 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99182143 chr2:99182154 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_39167 0 0 1 0 2 INPP4A chr2:99182103 3'AG 99182103 Downstream 52bp
chr2 99182154 99182154 1 + G T UCEC 99182143 + 99182123 99182163 41 GAGGACATGAGCCTTGGGATCATGGACTTGAGGAACGTGAC GAGGACATGAGCCTTGGGATCATGGACTTGATGAACGTGAC < 41bp 1 0.448209830075695 1 0.223322868347168 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99182143 chr2:99182154 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_39167 0 0 1 0 2 INPP4A chr2:99182229 5'GT 99182229 Upstream 76bp
chrX 55029473 55029473 1 + G A UCEC 55029466 + 55029446 55029486 41 CCATGCGGACCCTGGGAGGCCTGAGCGGCTAGTCTTTAAGA CCATGCGGACCCTGGGAGGCCTGAGCGACTAGTCTTTAAGA < 41bp 1 0.521520553599356 1 0.402795791625977 experiment 0.956958892801288 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control APEX2 ENSG00000169188 CDS Human protein_coding chrX:55029466 chrX:55029473 synonymous SNV . 0 28 hm5C_associated_SNPs_39168 0 0 1 0 2 APEX2 chrX:55029395 3'AG 55029395 Downstream 79bp
chrX 55029473 55029473 1 + G A UCEC 55029466 + 55029446 55029486 41 CCATGCGGACCCTGGGAGGCCTGAGCGGCTAGTCTTTAAGA CCATGCGGACCCTGGGAGGCCTGAGCGACTAGTCTTTAAGA < 41bp 1 0.521520553599356 1 0.402795791625977 experiment 0.956958892801288 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control APEX2 ENSG00000169188 CDS Human protein_coding chrX:55029466 chrX:55029473 synonymous SNV . 0 28 hm5C_associated_SNPs_39168 0 0 1 0 2 APEX2 chrX:55029541 5'GT 55029541 Upstream 69bp
chr1 171759662 171759662 1 + G T UCEC 171759671 + 171759651 171759691 41 CCTGCAGCCCCGGGGCAGTCCATTGATAAGAGTTACCTGTG CCTGCAGCCCCTGGGCAGTCCATTGATAAGAGTTACCTGTG < 41bp 1 0.242983925033981 1 0.0508601069450378 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171759671 chr1:171759662 synonymous SNV . 0 12 hm5C_associated_SNPs_39172 0 0 0 0 2 METTL13 chr1:171759592 3'AG 171759592 Downstream 71bp
chr1 171759662 171759662 1 + G T UCEC 171759671 + 171759651 171759691 41 CCTGCAGCCCCGGGGCAGTCCATTGATAAGAGTTACCTGTG CCTGCAGCCCCTGGGCAGTCCATTGATAAGAGTTACCTGTG < 41bp 1 0.242983925033981 1 0.0508601069450378 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171759671 chr1:171759662 synonymous SNV . 0 12 hm5C_associated_SNPs_39172 0 0 0 0 2 METTL13 chr1:171759756 5'GT 171759756 Upstream 95bp
chr10 75529380 75529380 1 + G A UCEC 75529387 + 75529367 75529407 41 ATCCAGCATATCGGGGAGTCCTGAATAGCCCTGTGAAGGCT ATCCAGCATATCGAGGAGTCCTGAATAGCCCTGTGAAGGCT < 41bp 1 0.72176513014979 1 0.801853716373444 experiment 0.55646973970042 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529387 chr10:75529380 synonymous SNV . 0 14 hm5C_associated_SNPs_39174 0 0 1 0 1 SEC24C chr10:75529373 3'AG 75529373 Downstream 8bp
chr12 95681542 95681542 1 + G T UCEC 95681551 + 95681531 95681571 41 AAATTAAAGTTGATTCAGCCCCACGTTCAAGCAAGCAACAA AAATTAAAGTTTATTCAGCCCCACGTTCAAGCAAGCAACAA < 41bp 1 0.400751114119425 1 0.0312183201313019 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VEZT ENSG00000028203 CDS Human protein_coding chr12:95681551 chr12:95681542 nonsynonymous SNV 1.000 0 12 hm5C_associated_SNPs_39175 0 0 1 0 1 VEZT chr12:95681633 5'GT 95681633 Upstream 92bp
chr17 38318315 38318315 1 + G T UCEC 38318298 + 38318278 38318318 41 CAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATG CAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGATGATTATG < 41bp 1 0.190741805658307 1 0.0392417311668396 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318298 chr17:38318315 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_39178 0 0 1 0 2 CASC3 chr17:38318255 3'AG 38318255 Downstream 61bp
chr17 38318315 38318315 1 + G T UCEC 38318298 + 38318278 38318318 41 CAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATG CAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGATGATTATG < 41bp 1 0.190741805658307 1 0.0392417311668396 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318298 chr17:38318315 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_39178 0 0 1 0 2 CASC3 chr17:38318406 5'GT 38318406 Upstream 92bp
chr17 38318315 38318315 1 + G T UCEC 38318303 + 38318283 38318323 41 TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGAT TGGGTAAAAAGGGCCCTAAGCATTTGGATGATTATGAAGAT < 41bp 1 0.145385358107427 1 0.093218982219696 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318303 chr17:38318315 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_39179 0 0 1 0 2 CASC3 chr17:38318255 3'AG 38318255 Downstream 61bp
chr17 38318315 38318315 1 + G T UCEC 38318303 + 38318283 38318323 41 TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGAT TGGGTAAAAAGGGCCCTAAGCATTTGGATGATTATGAAGAT < 41bp 1 0.145385358107427 1 0.093218982219696 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318303 chr17:38318315 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_39179 0 0 1 0 2 CASC3 chr17:38318406 5'GT 38318406 Upstream 92bp
chr11 114273571 114273571 1 + A G UCEC 114273562 + 114273542 114273582 41 CATTTTAGGAAGTAGTCATGCCCCACAAGATGTCAGTTTGT CATTTTAGGAAGTAGTCATGCCCCACAAGGTGTCAGTTTGT < 41bp 1 0.492437055648564 1 0.0905083119869232 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273562 chr11:114273571 nonsynonymous SNV 0.945 1 30 hm5C_associated_SNPs_39181 0 0 1 0 3 RBM7 chr11:114273550 3'AG 114273550 Downstream 22bp
chr11 114273571 114273571 1 + A G UCEC 114273562 + 114273542 114273582 41 CATTTTAGGAAGTAGTCATGCCCCACAAGATGTCAGTTTGT CATTTTAGGAAGTAGTCATGCCCCACAAGGTGTCAGTTTGT < 41bp 1 0.492437055648564 1 0.0905083119869232 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273562 chr11:114273571 nonsynonymous SNV 0.945 1 30 hm5C_associated_SNPs_39181 0 0 1 0 3 RBM7 chr11:114273554 3'AG 114273554 Downstream 18bp
chr11 114273571 114273571 1 + A G UCEC 114273562 + 114273542 114273582 41 CATTTTAGGAAGTAGTCATGCCCCACAAGATGTCAGTTTGT CATTTTAGGAAGTAGTCATGCCCCACAAGGTGTCAGTTTGT < 41bp 1 0.492437055648564 1 0.0905083119869232 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273562 chr11:114273571 nonsynonymous SNV 0.945 1 30 hm5C_associated_SNPs_39181 0 0 1 0 3 RBM7 chr11:114273637 5'GT 114273637 Upstream 67bp
chr11 114273571 114273571 1 + A G UCEC 114273563 + 114273543 114273583 41 ATTTTAGGAAGTAGTCATGCCCCACAAGATGTCAGTTTGTC ATTTTAGGAAGTAGTCATGCCCCACAAGGTGTCAGTTTGTC < 41bp 1 0.154790871583342 1 0.152987748384476 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273563 chr11:114273571 nonsynonymous SNV 0.945 1 29 hm5C_associated_SNPs_39182 0 0 1 0 3 RBM7 chr11:114273550 3'AG 114273550 Downstream 22bp
chr11 114273571 114273571 1 + A G UCEC 114273563 + 114273543 114273583 41 ATTTTAGGAAGTAGTCATGCCCCACAAGATGTCAGTTTGTC ATTTTAGGAAGTAGTCATGCCCCACAAGGTGTCAGTTTGTC < 41bp 1 0.154790871583342 1 0.152987748384476 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273563 chr11:114273571 nonsynonymous SNV 0.945 1 29 hm5C_associated_SNPs_39182 0 0 1 0 3 RBM7 chr11:114273554 3'AG 114273554 Downstream 18bp
chr11 114273571 114273571 1 + A G UCEC 114273563 + 114273543 114273583 41 ATTTTAGGAAGTAGTCATGCCCCACAAGATGTCAGTTTGTC ATTTTAGGAAGTAGTCATGCCCCACAAGGTGTCAGTTTGTC < 41bp 1 0.154790871583342 1 0.152987748384476 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273563 chr11:114273571 nonsynonymous SNV 0.945 1 29 hm5C_associated_SNPs_39182 0 0 1 0 3 RBM7 chr11:114273637 5'GT 114273637 Upstream 67bp
chr11 114273571 114273571 1 + A G UCEC 114273583 + 114273563 114273603 41 CCCACAAGATGTCAGTTTGTCATATCCCCAACATCATGTTG CCCACAAGGTGTCAGTTTGTCATATCCCCAACATCATGTTG < 41bp 1 0.3789341605572 1 0.164768636226654 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273583 chr11:114273571 nonsynonymous SNV 0.945 1 9 hm5C_associated_SNPs_39183 0 0 1 0 3 RBM7 chr11:114273550 3'AG 114273550 Downstream 22bp
chr11 114273571 114273571 1 + A G UCEC 114273583 + 114273563 114273603 41 CCCACAAGATGTCAGTTTGTCATATCCCCAACATCATGTTG CCCACAAGGTGTCAGTTTGTCATATCCCCAACATCATGTTG < 41bp 1 0.3789341605572 1 0.164768636226654 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273583 chr11:114273571 nonsynonymous SNV 0.945 1 9 hm5C_associated_SNPs_39183 0 0 1 0 3 RBM7 chr11:114273554 3'AG 114273554 Downstream 18bp
chr11 114273571 114273571 1 + A G UCEC 114273583 + 114273563 114273603 41 CCCACAAGATGTCAGTTTGTCATATCCCCAACATCATGTTG CCCACAAGGTGTCAGTTTGTCATATCCCCAACATCATGTTG < 41bp 1 0.3789341605572 1 0.164768636226654 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273583 chr11:114273571 nonsynonymous SNV 0.945 1 9 hm5C_associated_SNPs_39183 0 0 1 0 3 RBM7 chr11:114273637 5'GT 114273637 Upstream 67bp
chr11 114273571 114273571 1 + A G UCEC 114273589 + 114273569 114273609 41 AGATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATT AGGTGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATT < 41bp 1 0.647767165379198 1 0.0878706276416779 experiment 0.704465669241605 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273589 chr11:114273571 nonsynonymous SNV 0.945 1 3 hm5C_associated_SNPs_39184 0 0 1 0 3 RBM7 chr11:114273550 3'AG 114273550 Downstream 22bp
chr11 114273571 114273571 1 + A G UCEC 114273589 + 114273569 114273609 41 AGATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATT AGGTGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATT < 41bp 1 0.647767165379198 1 0.0878706276416779 experiment 0.704465669241605 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273589 chr11:114273571 nonsynonymous SNV 0.945 1 3 hm5C_associated_SNPs_39184 0 0 1 0 3 RBM7 chr11:114273554 3'AG 114273554 Downstream 18bp
chr11 114273571 114273571 1 + A G UCEC 114273589 + 114273569 114273609 41 AGATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATT AGGTGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATT < 41bp 1 0.647767165379198 1 0.0878706276416779 experiment 0.704465669241605 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273589 chr11:114273571 nonsynonymous SNV 0.945 1 3 hm5C_associated_SNPs_39184 0 0 1 0 3 RBM7 chr11:114273637 5'GT 114273637 Upstream 67bp
chr11 114273571 114273571 1 + A G UCEC 114273590 + 114273570 114273610 41 GATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTC GGTGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTC < 41bp 1 0.372995230164654 1 0.245010286569595 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273590 chr11:114273571 nonsynonymous SNV 0.945 1 2 hm5C_associated_SNPs_39185 0 0 1 0 3 RBM7 chr11:114273550 3'AG 114273550 Downstream 22bp
chr11 114273571 114273571 1 + A G UCEC 114273590 + 114273570 114273610 41 GATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTC GGTGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTC < 41bp 1 0.372995230164654 1 0.245010286569595 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273590 chr11:114273571 nonsynonymous SNV 0.945 1 2 hm5C_associated_SNPs_39185 0 0 1 0 3 RBM7 chr11:114273554 3'AG 114273554 Downstream 18bp
chr11 114273571 114273571 1 + A G UCEC 114273590 + 114273570 114273610 41 GATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTC GGTGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTC < 41bp 1 0.372995230164654 1 0.245010286569595 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273590 chr11:114273571 nonsynonymous SNV 0.945 1 2 hm5C_associated_SNPs_39185 0 0 1 0 3 RBM7 chr11:114273637 5'GT 114273637 Upstream 67bp
chr11 114273571 114273571 1 + A G UCEC 114273591 + 114273571 114273611 41 ATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTCA GTGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTCA < 41bp 1 0.718077545795295 1 0.384494245052338 experiment 0.563844908409409 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273591 chr11:114273571 nonsynonymous SNV 0.945 1 1 hm5C_associated_SNPs_39186 0 0 1 0 3 RBM7 chr11:114273550 3'AG 114273550 Downstream 22bp
chr11 114273571 114273571 1 + A G UCEC 114273591 + 114273571 114273611 41 ATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTCA GTGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTCA < 41bp 1 0.718077545795295 1 0.384494245052338 experiment 0.563844908409409 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273591 chr11:114273571 nonsynonymous SNV 0.945 1 1 hm5C_associated_SNPs_39186 0 0 1 0 3 RBM7 chr11:114273554 3'AG 114273554 Downstream 18bp
chr11 114273571 114273571 1 + A G UCEC 114273591 + 114273571 114273611 41 ATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTCA GTGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTCA < 41bp 1 0.718077545795295 1 0.384494245052338 experiment 0.563844908409409 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273591 chr11:114273571 nonsynonymous SNV 0.945 1 1 hm5C_associated_SNPs_39186 0 0 1 0 3 RBM7 chr11:114273637 5'GT 114273637 Upstream 67bp
chr12 22208495 22208495 1 + C A UCEC 22208514 + 22208494 22208534 41 TCTCTGTTGTGAGACGCCATCAGTTTCGATGGAGTGAAATT TATCTGTTGTGAGACGCCATCAGTTTCGATGGAGTGAAATT < 41bp 1 0.310194331635683 1 0.107810348272324 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208514 chr12:22208495 nonsynonymous SNV 0.996 3 2 hm5C_associated_SNPs_39188 0 0 1 3 1 CMAS chr12:22208544 5'GT 22208544 Upstream 50bp
chr14 94512155 94512155 1 + G A UCEC 94512166 + 94512146 94512186 41 TACGTGGACGAGATGGATACCGCCCTGAACCACCACGTGTT TACGTGGACAAGATGGATACCGCCCTGAACCACCACGTGTT < 41bp 1 0.452375397153721 1 0.165274292230606 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OTUB2 ENSG00000089723 CDS Human protein_coding chr14:94512166 chr14:94512155 nonsynonymous SNV 0.998 1 10 hm5C_associated_SNPs_39189 0 0 0 0 1 OTUB2 chr14:94512062 3'AG 94512062 Downstream 94bp
chr15 32920998 32920998 1 + G T UCEC 32920986 + 32920966 32921006 41 CAGAACACCTTCTATTACACCTCAAGAAGAAAGAATTGGTA CAGAACACCTTCTATTACACCTCAAGAAGAAATAATTGGTA < 41bp 1 0.427689556267967 1 0.379138350486755 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP11A ENSG00000198826 CDS Human protein_coding chr15:32920986 chr15:32920998 nonsynonymous SNV 0.006 1 33 hm5C_associated_SNPs_39190 2 0 0 0 2 ARHGAP11A chr15:32920929 3'AG 32920929 Downstream 70bp
chr15 32920998 32920998 1 + G T UCEC 32920986 + 32920966 32921006 41 CAGAACACCTTCTATTACACCTCAAGAAGAAAGAATTGGTA CAGAACACCTTCTATTACACCTCAAGAAGAAATAATTGGTA < 41bp 1 0.427689556267967 1 0.379138350486755 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP11A ENSG00000198826 CDS Human protein_coding chr15:32920986 chr15:32920998 nonsynonymous SNV 0.006 1 33 hm5C_associated_SNPs_39190 2 0 0 0 2 ARHGAP11A chr15:32921003 5'GT 32921003 Upstream 6bp
chr1 145663199 145663199 1 + T G UCEC 145663218 + 145663198 145663238 41 TTTAGACCCTTTCTAAGTAGCAGTCCACTGGACCAAGATAA TGTAGACCCTTTCTAAGTAGCAGTCCACTGGACCAAGATAA < 41bp 1 0.0691026780964142 1 0.122960448265076 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF115 ENSG00000121848 CDS Human other chr1:145663218 chr1:145663199 nonsynonymous SNV . 0 2 hm5C_associated_SNPs_39191 0 0 1 0 1 RNF115 chr1:145663159 3'AG 145663159 Downstream 41bp
chr2 38908425 38908425 1 + C T UCEC 38908437 + 38908417 38908457 41 TCCAGGTGCTCTGGACCCCTCGGGTGCTGTCAAATGGCGTC TCCAGGTGTTCTGGACCCCTCGGGTGCTGTCAAATGGCGTC < 41bp 1 0.770638405591066 1 0.793043613433838 experiment 0.458723188817868 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control GALM ENSG00000143891 CDS Human protein_coding chr2:38908437 chr2:38908425 nonsynonymous SNV 0.997 3 9 hm5C_associated_SNPs_39192 0 0 1 0 1 GALM chr2:38908422 3'AG 38908422 Downstream 4bp
chrX 41000573 41000573 1 + A C UCEC 41000586 + 41000566 41000606 41 TCAATGGAAAGATGAATGCACTGAATGAAGTTAATAAGGTG TCAATGGCAAGATGAATGCACTGAATGAAGTTAATAAGGTG < 41bp 1 0.243432237412267 1 0.135199576616287 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41000586 chrX:41000573 synonymous SNV . 0 8 hm5C_associated_SNPs_39193 0 0 1 0 1 USP9X chrX:41000546 3'AG 41000546 Downstream 28bp
chr1 44878379 44878379 1 + G A UCEC 44878373 + 44878353 44878393 41 ATCGGGAAGCCTCATCTAGCCCAGAGGATCGGAATGACAGA ATCGGGAAGCCTCATCTAGCCCAGAGAATCGGAATGACAGA < 41bp 1 0.475529390551412 1 0.101916700601578 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878373 chr1:44878379 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_39195 0 0 1 0 1 RNF220 chr1:44878394 5'GT 44878394 Upstream 16bp
chr1 44878379 44878379 1 + G A UCEC 44878382 + 44878362 44878402 41 CCTCATCTAGCCCAGAGGATCGGAATGACAGATGTAAGTAC CCTCATCTAGCCCAGAGAATCGGAATGACAGATGTAAGTAC < 41bp 1 0.784246739210348 1 0.767482101917267 experiment 0.431506521579304 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878382 chr1:44878379 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_39196 0 0 1 0 1 RNF220 chr1:44878394 5'GT 44878394 Upstream 16bp
chr7 87005031 87005031 1 + G A UCEC 87005024 + 87005004 87005044 41 CAGCATTAACTAGTGAGGAGCGAACTCGATGGGCTAAGGTT CAGCATTAACTAGTGAGGAGCGAACTCAATGGGCTAAGGTT < 41bp 1 0.142723260202305 1 0.300912082195282 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CROT ENSG00000005469 CDS Human protein_coding chr7:87005024 chr7:87005031 nonsynonymous SNV 0.981 1 28 hm5C_associated_SNPs_39197 0 0 1 0 2 CROT chr7:87004948 3'AG 87004948 Downstream 84bp
chr7 87005031 87005031 1 + G A UCEC 87005024 + 87005004 87005044 41 CAGCATTAACTAGTGAGGAGCGAACTCGATGGGCTAAGGTT CAGCATTAACTAGTGAGGAGCGAACTCAATGGGCTAAGGTT < 41bp 1 0.142723260202305 1 0.300912082195282 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CROT ENSG00000005469 CDS Human protein_coding chr7:87005024 chr7:87005031 nonsynonymous SNV 0.981 1 28 hm5C_associated_SNPs_39197 0 0 1 0 2 CROT chr7:87005041 5'GT 87005041 Upstream 11bp
chr2 46609717 46609717 1 + C T UCEC 46609709 + 46609689 46609729 41 GCCACCCAGTACCAGGACTACAGCCTGTCGTCAGCCCACAA GCCACCCAGTACCAGGACTACAGCCTGTTGTCAGCCCACAA < 41bp 1 0.363024474142757 1 0.225764483213425 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46609709 chr2:46609717 nonsynonymous SNV 0.053 0 29 hm5C_associated_SNPs_39198 0 0 1 0 1 EPAS1 chr2:46609737 5'GT 46609737 Upstream 21bp
chr6 7579964 7579964 1 + G T UCEC 7579952 + 7579932 7579972 41 AGATTGAAAGGTTGAGGGTTCTACTGCAGGAAGAAGGCACC AGATTGAAAGGTTGAGGGTTCTACTGCAGGAATAAGGCACC < 41bp 1 0.217265917379509 1 0.267739206552505 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7579952 chr6:7579964 stopgain 0.820 0 33 hm5C_associated_SNPs_39199 0 0 1 0 1 DSP chr6:7580005 5'GT 7580005 Upstream 42bp
chr19 7670113 7670113 1 + G A UCEC 7670120 + 7670100 7670140 41 ATGCCCCCACAGAGCACGTGCCCCCGGAGCTGTGGGAGCCC ATGCCCCCACAGAACACGTGCCCCCGGAGCTGTGGGAGCCC < 41bp 1 0.0491649021621953 1 0.0291037261486053 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7670120 chr19:7670113 synonymous SNV . 0 14 hm5C_associated_SNPs_39200 0 0 1 0 1 CAMSAP3 chr19:7670112 3'AG 7670112 Downstream 2bp
chr19 7670113 7670113 1 + G A UCEC 7670124 + 7670104 7670144 41 CCCCACAGAGCACGTGCCCCCGGAGCTGTGGGAGCCCTTCT CCCCACAGAACACGTGCCCCCGGAGCTGTGGGAGCCCTTCT < 41bp 1 0.530312715686332 1 0.839260876178741 experiment 0.939374568627335 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7670124 chr19:7670113 synonymous SNV . 0 10 hm5C_associated_SNPs_39201 0 0 1 0 1 CAMSAP3 chr19:7670112 3'AG 7670112 Downstream 2bp
chr14 93043717 93043717 1 + C T UCEC 93043725 + 93043705 93043745 41 ATGTTCCTGGTTCGCCGGGACAGCAGCTCGAAGCAGCTGGT ATGTTCCTGGTTTGCCGGGACAGCAGCTCGAAGCAGCTGGT < 41bp 1 0.456814410761482 1 0.465351760387421 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93043725 chr14:93043717 nonsynonymous SNV 0.005 1 13 hm5C_associated_SNPs_39202 0 0 0 0 1 RIN3 chr14:93043705 3'AG 93043705 Downstream 13bp
chr12 65264453 65264453 1 + C T UCEC 65264472 + 65264452 65264492 41 TCGAAGTGAATACCATGCAGCTTTTAACAGTATGATGATGG TTGAAGTGAATACCATGCAGCTTTTAACAGTATGATGATGG < 41bp 1 0.0152657404737874 1 0.0303803384304047 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBC1D30 ENSG00000111490 CDS Human protein_coding chr12:65264472 chr12:65264453 stopgain 0.124 0 2 hm5C_associated_SNPs_39203 0 0 0 0 1 TBC1D30 chr12:65264382 3'AG 65264382 Downstream 72bp
chr12 69218195 69218195 1 + T C UCEC 69218205 + 69218185 69218225 41 ACCTTGAAGGTGGGAGTGATCAAAAGGTAATCTAAGTAAAT ACCTTGAAGGCGGGAGTGATCAAAAGGTAATCTAAGTAAAT < 41bp 1 0.697895330525778 1 0.846690714359283 experiment 0.604209338948444 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MDM2 ENSG00000135679 CDS Human protein_coding chr12:69218205 chr12:69218195 synonymous SNV . 0 11 hm5C_associated_SNPs_39204 0 0 1 0 2 MDM2 chr12:69218143 3'AG 69218143 Downstream 53bp
chr12 69218195 69218195 1 + T C UCEC 69218205 + 69218185 69218225 41 ACCTTGAAGGTGGGAGTGATCAAAAGGTAATCTAAGTAAAT ACCTTGAAGGCGGGAGTGATCAAAAGGTAATCTAAGTAAAT < 41bp 1 0.697895330525778 1 0.846690714359283 experiment 0.604209338948444 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MDM2 ENSG00000135679 CDS Human protein_coding chr12:69218205 chr12:69218195 synonymous SNV . 0 11 hm5C_associated_SNPs_39204 0 0 1 0 2 MDM2 chr12:69218210 5'GT 69218210 Upstream 16bp
chr1 104115871 104115871 1 + G T UCEC 104115875 + 104115855 104115895 41 TATCGAGAACTACAATGATGCTACTCAGGTAAATTTTTTTA TATCGAGAACTACAATTATGCTACTCAGGTAAATTTTTTTA < 41bp 1 0.297440629531828 1 0.0643429458141327 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AMY2B ENSG00000240038 CDS Human protein_coding chr1:104115875 chr1:104115871 nonsynonymous SNV 0.233 5 17 hm5C_associated_SNPs_39205 0 0 0 0 1 AMY2B chr1:104115882 5'GT 104115882 Upstream 12bp
chr22 41924017 41924017 1 + C T UCEC 41924003 + 41923983 41924023 41 ACAAGCTGACCATTCAGGGCCTGAAGGACTTCACCCCTGGC ACAAGCTGACCATTCAGGGCCTGAAGGACTTCACTCCTGGC < 41bp 1 0.524336666761265 1 0.469726771116257 experiment 0.95132666647747 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41924003 chr22:41924017 synonymous SNV . 0 35 hm5C_associated_SNPs_39209 0 0 1 0 1 ACO2 chr22:41924026 5'GT 41924026 Upstream 10bp
chr16 84884226 84884226 1 + A T UCEC 84884208 + 84884188 84884228 41 CACCAACAAGATCGGTTGTGCTGTGAACACCTGCCGGAAGA CACCAACAAGATCGGTTGTGCTGTGAACACCTGCCGGATGA < 41bp 1 0.313961955858326 1 0.139755219221115 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84884208 chr16:84884226 nonsynonymous SNV 0.680 1 39 hm5C_associated_SNPs_39212 0 0 0 0 2 CRISPLD2 chr16:84884174 3'AG 84884174 Downstream 53bp
chr16 84884226 84884226 1 + A T UCEC 84884208 + 84884188 84884228 41 CACCAACAAGATCGGTTGTGCTGTGAACACCTGCCGGAAGA CACCAACAAGATCGGTTGTGCTGTGAACACCTGCCGGATGA < 41bp 1 0.313961955858326 1 0.139755219221115 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84884208 chr16:84884226 nonsynonymous SNV 0.680 1 39 hm5C_associated_SNPs_39212 0 0 0 0 2 CRISPLD2 chr16:84884289 5'GT 84884289 Upstream 64bp
chr15 74000686 74000686 1 + C A UCEC 74000701 + 74000681 74000721 41 GCAGCCTATGACATTCCCCCCAGAGGCCCTGTGGGTGACCG GCAGCATATGACATTCCCCCCAGAGGCCCTGTGGGTGACCG < 41bp 1 0.454324406056372 1 0.812351942062378 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD276 ENSG00000103855 CDS Human protein_coding chr15:74000701 chr15:74000686 nonsynonymous SNV 0.778 1 6 hm5C_associated_SNPs_39213 0 0 1 3 1 CD276 chr15:74000680 3'AG 74000680 Downstream 7bp
chr12 112940031 112940031 1 + G A UCEC 112940029 + 112940009 112940049 41 GTGGAGATCAGAGCCCTCTCCCGCCTTGTACTCCAACGCCA GTGGAGATCAGAGCCCTCTCCCACCTTGTACTCCAACGCCA < 41bp 1 0.234074275102614 1 0.0664404928684235 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112940029 chr12:112940031 synonymous SNV . 0 23 hm5C_associated_SNPs_39214 1 0 1 0 1 PTPN11 chr12:112939948 3'AG 112939948 Downstream 84bp
chr8 26223851 26223851 1 + T C UCEC 26223834 + 26223814 26223854 41 TTGTATTTTTCCCCCAGGTGCATGAATACCTCAGAAGTAAA TTGTATTTTTCCCCCAGGTGCATGAATACCTCAGAAGCAAA < 41bp 1 0.189100842074753 1 0.110095530748367 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223834 chr8:26223851 synonymous SNV . 0 38 hm5C_associated_SNPs_39215 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 21bp
chr8 26223851 26223851 1 + T C UCEC 26223834 + 26223814 26223854 41 TTGTATTTTTCCCCCAGGTGCATGAATACCTCAGAAGTAAA TTGTATTTTTCCCCCAGGTGCATGAATACCTCAGAAGCAAA < 41bp 1 0.189100842074753 1 0.110095530748367 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223834 chr8:26223851 synonymous SNV . 0 38 hm5C_associated_SNPs_39215 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 72bp
chr8 26223851 26223851 1 + T C UCEC 26223842 + 26223822 26223862 41 TTCCCCCAGGTGCATGAATACCTCAGAAGTAAACTCTGTTC TTCCCCCAGGTGCATGAATACCTCAGAAGCAAACTCTGTTC < 41bp 1 0.314504726648204 1 0.0363706052303314 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223842 chr8:26223851 synonymous SNV . 0 30 hm5C_associated_SNPs_39216 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 21bp
chr8 26223851 26223851 1 + T C UCEC 26223842 + 26223822 26223862 41 TTCCCCCAGGTGCATGAATACCTCAGAAGTAAACTCTGTTC TTCCCCCAGGTGCATGAATACCTCAGAAGCAAACTCTGTTC < 41bp 1 0.314504726648204 1 0.0363706052303314 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223842 chr8:26223851 synonymous SNV . 0 30 hm5C_associated_SNPs_39216 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 72bp
chr8 26223851 26223851 1 + T C UCEC 26223843 + 26223823 26223863 41 TCCCCCAGGTGCATGAATACCTCAGAAGTAAACTCTGTTCA TCCCCCAGGTGCATGAATACCTCAGAAGCAAACTCTGTTCA < 41bp 1 0.531881208280528 1 0.155847996473312 experiment 0.936237583438944 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223843 chr8:26223851 synonymous SNV . 0 29 hm5C_associated_SNPs_39217 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 21bp
chr8 26223851 26223851 1 + T C UCEC 26223843 + 26223823 26223863 41 TCCCCCAGGTGCATGAATACCTCAGAAGTAAACTCTGTTCA TCCCCCAGGTGCATGAATACCTCAGAAGCAAACTCTGTTCA < 41bp 1 0.531881208280528 1 0.155847996473312 experiment 0.936237583438944 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223843 chr8:26223851 synonymous SNV . 0 29 hm5C_associated_SNPs_39217 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 72bp
chr8 26223851 26223851 1 + T C UCEC 26223845 + 26223825 26223865 41 CCCCAGGTGCATGAATACCTCAGAAGTAAACTCTGTTCACT CCCCAGGTGCATGAATACCTCAGAAGCAAACTCTGTTCACT < 41bp 1 0.569367234309479 1 0.619218707084656 experiment 0.861265531381042 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223845 chr8:26223851 synonymous SNV . 0 27 hm5C_associated_SNPs_39218 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 21bp
chr8 26223851 26223851 1 + T C UCEC 26223845 + 26223825 26223865 41 CCCCAGGTGCATGAATACCTCAGAAGTAAACTCTGTTCACT CCCCAGGTGCATGAATACCTCAGAAGCAAACTCTGTTCACT < 41bp 1 0.569367234309479 1 0.619218707084656 experiment 0.861265531381042 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223845 chr8:26223851 synonymous SNV . 0 27 hm5C_associated_SNPs_39218 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 72bp
chr8 26223851 26223851 1 + T C UCEC 26223855 + 26223835 26223875 41 ATGAATACCTCAGAAGTAAACTCTGTTCACTGTATGAAAAT ATGAATACCTCAGAAGCAAACTCTGTTCACTGTATGAAAAT < 41bp 1 0.28902620119481 1 0.0995935201644897 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223855 chr8:26223851 synonymous SNV . 0 17 hm5C_associated_SNPs_39219 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 21bp
chr8 26223851 26223851 1 + T C UCEC 26223855 + 26223835 26223875 41 ATGAATACCTCAGAAGTAAACTCTGTTCACTGTATGAAAAT ATGAATACCTCAGAAGCAAACTCTGTTCACTGTATGAAAAT < 41bp 1 0.28902620119481 1 0.0995935201644897 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223855 chr8:26223851 synonymous SNV . 0 17 hm5C_associated_SNPs_39219 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 72bp
chr8 26223851 26223851 1 + T C UCEC 26223857 + 26223837 26223877 41 GAATACCTCAGAAGTAAACTCTGTTCACTGTATGAAAATGA GAATACCTCAGAAGCAAACTCTGTTCACTGTATGAAAATGA < 41bp 1 0.0939297754258888 1 0.111632943153381 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223857 chr8:26223851 synonymous SNV . 0 15 hm5C_associated_SNPs_39220 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 21bp
chr8 26223851 26223851 1 + T C UCEC 26223857 + 26223837 26223877 41 GAATACCTCAGAAGTAAACTCTGTTCACTGTATGAAAATGA GAATACCTCAGAAGCAAACTCTGTTCACTGTATGAAAATGA < 41bp 1 0.0939297754258888 1 0.111632943153381 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223857 chr8:26223851 synonymous SNV . 0 15 hm5C_associated_SNPs_39220 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 72bp
chr8 26223851 26223851 1 + T C UCEC 26223862 + 26223842 26223882 41 CCTCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTGCA CCTCAGAAGCAAACTCTGTTCACTGTATGAAAATGACTGCA < 41bp 1 0.312586889508685 1 0.164365530014038 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223862 chr8:26223851 synonymous SNV . 0 10 hm5C_associated_SNPs_39221 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 21bp
chr8 26223851 26223851 1 + T C UCEC 26223862 + 26223842 26223882 41 CCTCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTGCA CCTCAGAAGCAAACTCTGTTCACTGTATGAAAATGACTGCA < 41bp 1 0.312586889508685 1 0.164365530014038 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223862 chr8:26223851 synonymous SNV . 0 10 hm5C_associated_SNPs_39221 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 72bp
chr8 26223851 26223851 1 + T C UCEC 26223864 + 26223844 26223884 41 TCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTGCATA TCAGAAGCAAACTCTGTTCACTGTATGAAAATGACTGCATA < 41bp 1 0.484392189768565 1 0.0862955451011658 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223864 chr8:26223851 synonymous SNV . 0 8 hm5C_associated_SNPs_39222 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 21bp
chr8 26223851 26223851 1 + T C UCEC 26223864 + 26223844 26223884 41 TCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTGCATA TCAGAAGCAAACTCTGTTCACTGTATGAAAATGACTGCATA < 41bp 1 0.484392189768565 1 0.0862955451011658 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223864 chr8:26223851 synonymous SNV . 0 8 hm5C_associated_SNPs_39222 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 72bp
chr17 37650840 37650840 1 + C T UCEC 37650826 + 37650806 37650846 41 CTAGACAATGAGAAAGAGGGCTTCCCAATCACAGCCATTCG CTAGACAATGAGAAAGAGGGCTTCCCAATCACAGTCATTCG < 41bp 1 0.0538320353687948 1 0.0485202372074127 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37650826 chr17:37650840 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_39224 0 0 1 0 1 CDK12 chr17:37650777 3'AG 37650777 Downstream 64bp
chr19 11559899 11559899 1 + G A UCEC 11559894 + 11559874 11559914 41 CCCTGTGTCTCTCACAGCACCTGGGGCTCATGGATTGGCCC CCCTGTGTCTCTCACAGCACCTGGGACTCATGGATTGGCCC < 41bp 1 0.681947326154298 1 0.693729639053345 experiment 0.636105347691404 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11559894 chr19:11559899 nonsynonymous SNV 0.989 3 26 hm5C_associated_SNPs_39225 0 0 1 0 2 PRKCSH chr19:11559891 3'AG 11559891 Downstream 9bp
chr19 11559899 11559899 1 + G A UCEC 11559894 + 11559874 11559914 41 CCCTGTGTCTCTCACAGCACCTGGGGCTCATGGATTGGCCC CCCTGTGTCTCTCACAGCACCTGGGACTCATGGATTGGCCC < 41bp 1 0.681947326154298 1 0.693729639053345 experiment 0.636105347691404 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11559894 chr19:11559899 nonsynonymous SNV 0.989 3 26 hm5C_associated_SNPs_39225 0 0 1 0 2 PRKCSH chr19:11559990 5'GT 11559990 Upstream 92bp
chr8 97316287 97316287 1 + G T UCEC 97316303 + 97316283 97316323 41 CACCGGGAAGATCAAGAGAGCTGTTCTGCAGTTCACTCCTG CACCTGGAAGATCAAGAGAGCTGTTCTGCAGTTCACTCCTG < 41bp 1 0.229515529435524 1 0.0524026155471802 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97316303 chr8:97316287 nonsynonymous SNV 0.959 4 5 hm5C_associated_SNPs_39227 0 0 1 0 1 PTDSS1 chr8:97316268 3'AG 97316268 Downstream 20bp
chr12 121001391 121001391 1 + G A UCEC 121001403 + 121001383 121001423 41 CTTCACACGCCTCAGCAGCTCTCCTTGTTACTACTTTTACC CTTCACACACCTCAGCAGCTCTCCTTGTTACTACTTTTACC < 41bp 1 0.349195728532568 1 0.191885769367218 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF10 ENSG00000022840 CDS Human protein_coding chr12:121001403 chr12:121001391 nonsynonymous SNV 0.744 1 9 hm5C_associated_SNPs_39228 0 0 1 0 1 RNF10 chr12:121001426 5'GT 121001426 Upstream 36bp
chr12 121001391 121001391 1 + G A UCEC 121001406 + 121001386 121001426 41 CACACGCCTCAGCAGCTCTCCTTGTTACTACTTTTACCAAG CACACACCTCAGCAGCTCTCCTTGTTACTACTTTTACCAAG < 41bp 1 0.279598167111929 1 0.181853532791138 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF10 ENSG00000022840 CDS Human protein_coding chr12:121001406 chr12:121001391 nonsynonymous SNV 0.744 1 6 hm5C_associated_SNPs_39229 0 0 1 0 1 RNF10 chr12:121001426 5'GT 121001426 Upstream 36bp
chr22 20755039 20755039 1 + C A UCEC 20755030 + 20755010 20755050 41 ATGTGATGTTGGAGAACTACCAGAACCTTCTTGCCCTAGGT ATGTGATGTTGGAGAACTACCAGAACCTTATTGCCCTAGGT < 41bp 1 0.711401028382076 1 0.818691372871399 experiment 0.577197943235848 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF74 ENSG00000185252 CDS Human protein_coding chr22:20755030 chr22:20755039 nonsynonymous SNV 0.994 2 30 hm5C_associated_SNPs_39230 0 0 1 0 1 ZNF74 chr22:20755048 5'GT 20755048 Upstream 10bp
chr7 101459313 101459313 1 + G A UCEC 101459315 + 101459295 101459335 41 CTCAATATGTCTCAAGATGGCGGCCAATGTGGGATCGATGT CTCAATATGTCTCAAGATAGCGGCCAATGTGGGATCGATGT < 41bp 1 0.145725354795989 1 0.407864540815353 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101459315 chr7:101459313 nonsynonymous SNV 0.823 1 19 hm5C_associated_SNPs_39231 0 0 1 0 1 CUX1 chr7:101459373 5'GT 101459373 Upstream 61bp
chr21 40191467 40191467 1 + C G UCEC 40191451 + 40191431 40191471 41 TCCCAAAGACCACGACTCCCCTGAGAACGGTGCGGACAGCT TCCCAAAGACCACGACTCCCCTGAGAACGGTGCGGAGAGCT < 41bp 1 0.575968093362538 1 0.47706013917923 experiment 0.848063813274925 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191451 chr21:40191467 nonsynonymous SNV 0.786 0 37 hm5C_associated_SNPs_39233 0 0 1 0 1 ETS2 chr21:40191427 3'AG 40191427 Downstream 41bp
chr10 135197561 135197561 1 + A C UCEC 135197543 + 135197523 135197563 41 GAAGCAATCAGGAAGATAGGCTTTGGGACCAACAACAAAAT GAAGCAATCAGGAAGATAGGCTTTGGGACCAACAACAACAT < 41bp 1 0.176250181115214 1 0.0525492131710052 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAOX ENSG00000148832 CDS Human protein_coding chr10:135197543 chr10:135197561 nonsynonymous SNV 0.997 5 39 hm5C_associated_SNPs_39234 0 0 0 1 2 PAOX chr10:135197464 3'AG 135197464 Downstream 98bp
chr10 135197561 135197561 1 + A C UCEC 135197543 + 135197523 135197563 41 GAAGCAATCAGGAAGATAGGCTTTGGGACCAACAACAAAAT GAAGCAATCAGGAAGATAGGCTTTGGGACCAACAACAACAT < 41bp 1 0.176250181115214 1 0.0525492131710052 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAOX ENSG00000148832 CDS Human protein_coding chr10:135197543 chr10:135197561 nonsynonymous SNV 0.997 5 39 hm5C_associated_SNPs_39234 0 0 0 1 2 PAOX chr10:135197474 3'AG 135197474 Downstream 88bp
chr5 1034383 1034383 1 + G A UCEC 1034388 + 1034368 1034408 41 TCGGTGGAGGAGGACGACCGCCAGGAGTGGACGTTCACGCT TCGGTGGAGGAGGACAACCGCCAGGAGTGGACGTTCACGCT < 41bp 1 0.381376425545836 1 0.529421031475067 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1034388 chr5:1034383 nonsynonymous SNV 0.001 0 16 hm5C_associated_SNPs_39235 0 0 0 0 2 NKD2 chr5:1034350 3'AG 1034350 Downstream 34bp
chr5 1034383 1034383 1 + G A UCEC 1034388 + 1034368 1034408 41 TCGGTGGAGGAGGACGACCGCCAGGAGTGGACGTTCACGCT TCGGTGGAGGAGGACAACCGCCAGGAGTGGACGTTCACGCT < 41bp 1 0.381376425545836 1 0.529421031475067 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1034388 chr5:1034383 nonsynonymous SNV 0.001 0 16 hm5C_associated_SNPs_39235 0 0 0 0 2 NKD2 chr5:1034445 5'GT 1034445 Upstream 63bp
chr3 37340494 37340494 1 + G T UCEC 37340497 + 37340477 37340517 41 TGGATGAAAGACTTCAAGAACTAGAAAAGATAAAGGTAAAA TGGATGAAAGACTTCAATAACTAGAAAAGATAAAGGTAAAA < 41bp 1 0.616867271626919 1 0.598400056362152 experiment 0.766265456746163 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37340497 chr3:37340494 stopgain 0.997 0 18 hm5C_associated_SNPs_39236 0 0 1 0 1 GOLGA4 chr3:37340511 5'GT 37340511 Upstream 18bp
chr12 27908161 27908161 1 + G T UCEC 27908142 + 27908122 27908162 41 AGAATGGGAAAAAAGTAAGACTGAAGCAGACATGGAAGAGT AGAATGGGAAAAAAGTAAGACTGAAGCAGACATGGAAGATT < 41bp 1 0.598787623630984 1 0.454436451196671 experiment 0.802424752738033 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPS35 ENSG00000061794 CDS Human protein_coding chr12:27908142 chr12:27908161 nonsynonymous SNV 0.995 1 40 hm5C_associated_SNPs_39238 0 0 1 0 1 MRPS35 chr12:27908114 3'AG 27908114 Downstream 48bp
chr12 27908161 27908161 1 + G T UCEC 27908148 + 27908128 27908168 41 GGAAAAAAGTAAGACTGAAGCAGACATGGAAGAGTATATAT GGAAAAAAGTAAGACTGAAGCAGACATGGAAGATTATATAT < 41bp 1 0.50018392606878 1 0.835422873497009 experiment 0.99963214786244 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPS35 ENSG00000061794 CDS Human protein_coding chr12:27908148 chr12:27908161 nonsynonymous SNV 0.995 1 34 hm5C_associated_SNPs_39239 0 0 1 0 1 MRPS35 chr12:27908114 3'AG 27908114 Downstream 48bp
chr11 47256905 47256905 1 + G T UCEC 47256916 + 47256896 47256936 41 AGTGGGACTGCCCCCTGGGCCTGATCCCGCACCCTCACCGT AGTGGGACTTCCCCCTGGGCCTGATCCCGCACCCTCACCGT < 41bp 1 0.500056991798344 1 0.0525939464569092 experiment 0.999886016403312 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DDB2 ENSG00000134574 CDS Human protein_coding chr11:47256916 chr11:47256905 nonsynonymous SNV 0.003 0 10 hm5C_associated_SNPs_39241 0 0 1 0 2 DDB2 chr11:47256821 3'AG 47256821 Downstream 85bp
chr11 47256905 47256905 1 + G T UCEC 47256916 + 47256896 47256936 41 AGTGGGACTGCCCCCTGGGCCTGATCCCGCACCCTCACCGT AGTGGGACTTCCCCCTGGGCCTGATCCCGCACCCTCACCGT < 41bp 1 0.500056991798344 1 0.0525939464569092 experiment 0.999886016403312 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DDB2 ENSG00000134574 CDS Human protein_coding chr11:47256916 chr11:47256905 nonsynonymous SNV 0.003 0 10 hm5C_associated_SNPs_39241 0 0 1 0 2 DDB2 chr11:47256963 5'GT 47256963 Upstream 59bp
chr1 162745450 162745450 1 + T A UCEC 162745469 + 162745449 162745489 41 TTTCTTAAGGAGATAAAGATCATGTCTCGGCTCAAGGACCC TATCTTAAGGAGATAAAGATCATGTCTCGGCTCAAGGACCC < 41bp 1 0.247138002888178 1 0.0848844349384308 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162745469 chr1:162745450 nonsynonymous SNV 1.000 5 2 hm5C_associated_SNPs_39242 0 0 0 0 1 DDR2 chr1:162745442 3'AG 162745442 Downstream 9bp
chr6 148808762 148808762 1 + G A UCEC 148808768 + 148808748 148808788 41 AGCTCAAGGAATACGAGGCCCAGCACCGGCAGTCGGCTGCC AGCTCAAGGAATACAAGGCCCAGCACCGGCAGTCGGCTGCC < 41bp 1 0.621249543034522 1 0.19612780213356 experiment 0.757500913930956 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SASH1 ENSG00000111961 CDS Human protein_coding chr6:148808768 chr6:148808762 nonsynonymous SNV 0.983 2 15 hm5C_associated_SNPs_39243 0 0 0 0 2 SASH1 chr6:148808750 3'AG 148808750 Downstream 13bp
chr6 148808762 148808762 1 + G A UCEC 148808768 + 148808748 148808788 41 AGCTCAAGGAATACGAGGCCCAGCACCGGCAGTCGGCTGCC AGCTCAAGGAATACAAGGCCCAGCACCGGCAGTCGGCTGCC < 41bp 1 0.621249543034522 1 0.19612780213356 experiment 0.757500913930956 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SASH1 ENSG00000111961 CDS Human protein_coding chr6:148808768 chr6:148808762 nonsynonymous SNV 0.983 2 15 hm5C_associated_SNPs_39243 0 0 0 0 2 SASH1 chr6:148808851 5'GT 148808851 Upstream 90bp
chr11 8118834 8118834 1 + G T UCEC 8118815 + 8118795 8118835 41 CCCAACAGCTCCAGAGCAACCAGTGGACGTTGAGGTCCAGG CCCAACAGCTCCAGAGCAACCAGTGGACGTTGAGGTCCATG < 41bp 1 0.611441528240971 1 0.449231088161469 experiment 0.777116943518058 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TUB ENSG00000166402 CDS Human protein_coding chr11:8118815 chr11:8118834 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_39244 0 0 0 0 1 TUB chr11:8118775 3'AG 8118775 Downstream 60bp
chr19 39114733 39114733 1 + G C UCEC 39114721 + 39114701 39114741 41 TTGTTCTTTTTCTTAGGTACCAGTTCAACCCAGCCTTCTTT TTGTTCTTTTTCTTAGGTACCAGTTCAACCCACCCTTCTTT < 41bp 1 0.218100501500472 1 0.695310473442078 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39114721 chr19:39114733 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_39247 0 0 1 0 1 EIF3K chr19:39114717 3'AG 39114717 Downstream 17bp
chr11 123989027 123989027 1 + C T UCEC 123989020 + 123989000 123989040 41 CCAACCTGGGTCGAAGGCGGCAGTCACCCTGAAGTATGTGC CCAACCTGGGTCGAAGGCGGCAGTCACTCTGAAGTATGTGC < 41bp 1 0.152944704598959 1 0.254505574703217 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VWA5A ENSG00000110002 CDS Human protein_coding chr11:123989020 chr11:123989027 synonymous SNV . 0 28 hm5C_associated_SNPs_39248 0 0 0 0 1 VWA5A chr11:123989118 5'GT 123989118 Upstream 92bp
chr12 132514403 132514403 1 + C T UCEC 132514398 + 132514378 132514418 41 GCAGCTGCGGCAGACCACGGCTCCACGCCTGCTGCAGTTCC GCAGCTGCGGCAGACCACGGCTCCATGCCTGCTGCAGTTCC < 41bp 1 0.561975536799118 1 0.981580018997192 experiment 0.876048926401765 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132514398 chr12:132514403 nonsynonymous SNV 0.014 1 26 hm5C_associated_SNPs_39249 0 0 1 0 1 EP400 chr12:132514448 5'GT 132514448 Upstream 46bp
chr1 227171800 227171800 1 + T C UCEC 227171811 + 227171791 227171831 41 CCAGGGACCTGCTGAAGGGCCACCCCTTCTTCTATGTGCCT CCAGGGACCCGCTGAAGGGCCACCCCTTCTTCTATGTGCCT < 41bp 1 0.196699275979951 1 0.0861896872520447 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COQ8A ENSG00000163050 CDS Human protein_coding chr1:227171811 chr1:227171800 nonsynonymous SNV 0.939 4 10 hm5C_associated_SNPs_39250 0 0 1 0 1 COQ8A chr1:227171795 3'AG 227171795 Downstream 6bp
chr19 46878978 46878978 1 + G A UCEC 46878977 + 46878957 46878997 41 GGCGACGAGCACAAGCGCTCCGTGGTGGACTCGCTGGACAT GGCGACGAGCACAAGCGCTCCATGGTGGACTCGCTGGACAT < 41bp 1 0.477915656488408 1 0.472043454647064 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46878977 chr19:46878978 nonsynonymous SNV 0.007 2 22 hm5C_associated_SNPs_39251 0 0 1 0 1 PPP5C chr19:46879008 5'GT 46879008 Upstream 31bp
chr15 77241491 77241491 1 + G T UCEC 77241508 + 77241488 77241528 41 CTTGTTTCTCACCAGTGAAGCCACAGATTATGGCAGACAGC CTTTTTTCTCACCAGTGAAGCCACAGATTATGGCAGACAGC < 41bp 1 0.443818896383126 1 0.183861911296844 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RCN2 ENSG00000117906 CDS Human protein_coding chr15:77241508 chr15:77241491 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_39252 0 0 1 0 1 RCN2 chr15:77241411 3'AG 77241411 Downstream 81bp
chr10 105172966 105172966 1 + C T UCEC 105172958 + 105172938 105172978 41 CTTCCTACAGCCTGGACGCCCACTCACCCGACTCTCTTGCC CTTCCTACAGCCTGGACGCCCACTCACCTGACTCTCTTGCC < 41bp 1 0.105314079359621 1 0.0664258003234863 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105172958 chr10:105172966 stopgain 0.005 0 29 hm5C_associated_SNPs_39253 0 0 1 0 1 PDCD11 chr10:105172873 3'AG 105172873 Downstream 94bp
chr14 21544741 21544741 1 + T G UCEC 21544752 + 21544732 21544772 41 ATCCTCCCCTTGTTCAGCGGCTGCTGATTCTCATTCATGAT ATCCTCCCCGTGTTCAGCGGCTGCTGATTCTCATTCATGAT < 41bp 1 0.15075957958949 1 0.138008564710617 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21544752 chr14:21544741 nonsynonymous SNV 0.816 0 10 hm5C_associated_SNPs_39254 0 0 1 0 3 ARHGEF40 chr14:21544695 3'AG 21544695 Downstream 47bp
chr14 21544741 21544741 1 + T G UCEC 21544752 + 21544732 21544772 41 ATCCTCCCCTTGTTCAGCGGCTGCTGATTCTCATTCATGAT ATCCTCCCCGTGTTCAGCGGCTGCTGATTCTCATTCATGAT < 41bp 1 0.15075957958949 1 0.138008564710617 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21544752 chr14:21544741 nonsynonymous SNV 0.816 0 10 hm5C_associated_SNPs_39254 0 0 1 0 3 ARHGEF40 chr14:21544722 3'AG 21544722 Downstream 20bp
chr14 21544741 21544741 1 + T G UCEC 21544752 + 21544732 21544772 41 ATCCTCCCCTTGTTCAGCGGCTGCTGATTCTCATTCATGAT ATCCTCCCCGTGTTCAGCGGCTGCTGATTCTCATTCATGAT < 41bp 1 0.15075957958949 1 0.138008564710617 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21544752 chr14:21544741 nonsynonymous SNV 0.816 0 10 hm5C_associated_SNPs_39254 0 0 1 0 3 ARHGEF40 chr14:21544802 5'GT 21544802 Upstream 62bp
chr7 35903184 35903184 1 + G A UCEC 35903183 + 35903163 35903203 41 TGAATCTGGATTGGGAAAGTCGACATTAATCAACTCATTAT TGAATCTGGATTGGGAAAGTCAACATTAATCAACTCATTAT < 41bp 1 0.645388185923411 1 0.24961319565773 experiment 0.709223628153177 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEPT7 ENSG00000122545 CDS Human protein_coding chr7:35903183 chr7:35903184 synonymous SNV . 0 22 hm5C_associated_SNPs_39257 0 0 1 0 2 SEPT7 chr7:35903162 3'AG 35903162 Downstream 23bp
chr7 35903184 35903184 1 + G A UCEC 35903183 + 35903163 35903203 41 TGAATCTGGATTGGGAAAGTCGACATTAATCAACTCATTAT TGAATCTGGATTGGGAAAGTCAACATTAATCAACTCATTAT < 41bp 1 0.645388185923411 1 0.24961319565773 experiment 0.709223628153177 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEPT7 ENSG00000122545 CDS Human protein_coding chr7:35903183 chr7:35903184 synonymous SNV . 0 22 hm5C_associated_SNPs_39257 0 0 1 0 2 SEPT7 chr7:35903268 5'GT 35903268 Upstream 85bp
chr3 32169669 32169669 1 + G T UCEC 32169667 + 32169647 32169687 41 TTTGAAGAAACAGTGAATGGCAGAAAACTGACAGACATCAT TTTGAAGAAACAGTGAATGGCATAAAACTGACAGACATCAT < 41bp 1 0.333703654024783 1 0.0931618809700012 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GPD1L ENSG00000152642 CDS Human protein_coding chr3:32169667 chr3:32169669 nonsynonymous SNV 0.992 2 23 hm5C_associated_SNPs_39258 0 0 1 0 1 GPD1L chr3:32169745 5'GT 32169745 Upstream 77bp
chr5 34936298 34936298 1 + A C UCEC 34936300 + 34936280 34936320 41 AAATGATTGCCAAGGAAGAACTAGAATCTGTGTTAGAGGAA AAATGATTGCCAAGGAAGCACTAGAATCTGTGTTAGAGGAA < 41bp 1 0.717513675577741 1 0.458467900753021 experiment 0.564972648844517 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34936300 chr5:34936298 nonsynonymous SNV 0.999 4 19 hm5C_associated_SNPs_39260 0 0 1 0 1 DNAJC21 chr5:34936371 5'GT 34936371 Upstream 74bp
chr5 73045767 73045767 1 + G T UCEC 73045760 + 73045740 73045780 41 GGATCTCATCAGCGACATGTCATGATTGCAGAGCGCATCGA GGATCTCATCAGCGACATGTCATGATTTCAGAGCGCATCGA < 41bp 1 0.703873579337228 1 0.0955105721950531 experiment 0.592252841325545 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF28 ENSG00000214944 CDS Human protein_coding chr5:73045760 chr5:73045767 nonsynonymous SNV 0.080 3 28 hm5C_associated_SNPs_39261 0 0 1 0 1 ARHGEF28 chr5:73045809 5'GT 73045809 Upstream 43bp
chr20 1905430 1905430 1 + C T UCEC 1905422 + 1905402 1905442 41 GTCCCTAGAGAACACTGGATCTAATGAACGGAACATCTATA GTCCCTAGAGAACACTGGATCTAATGAATGGAACATCTATA < 41bp 1 0.141278821890426 1 0.05214723944664 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1905422 chr20:1905430 nonsynonymous SNV 0.001 0 29 hm5C_associated_SNPs_39262 0 0 0 0 2 SIRPA chr20:1905410 3'AG 1905410 Downstream 21bp
chr20 1905430 1905430 1 + C T UCEC 1905422 + 1905402 1905442 41 GTCCCTAGAGAACACTGGATCTAATGAACGGAACATCTATA GTCCCTAGAGAACACTGGATCTAATGAATGGAACATCTATA < 41bp 1 0.141278821890426 1 0.05214723944664 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1905422 chr20:1905430 nonsynonymous SNV 0.001 0 29 hm5C_associated_SNPs_39262 0 0 0 0 2 SIRPA chr20:1905523 5'GT 1905523 Upstream 94bp
chr2 24888643 24888643 1 + G T UCEC 24888633 + 24888613 24888653 41 AACAGCACGGAAAAGAGGCGCAGGGAGCAAGAAAATAAATA AACAGCACGGAAAAGAGGCGCAGGGAGCAATAAAATAAATA < 41bp 1 0.293476707629863 1 0.575988411903381 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24888633 chr2:24888643 stopgain 1.000 1 31 hm5C_associated_SNPs_39263 0 0 1 0 1 NCOA1 chr2:24888618 3'AG 24888618 Downstream 26bp
chr19 49993817 49993817 1 + C A UCEC 49993825 + 49993805 49993845 41 CAGCCGCATCTTCTGGCGGACCGTGCGAGGTGAGCAGAGCG CAGCCGCATCTTATGGCGGACCGTGCGAGGTGAGCAGAGCG < 41bp 1 0.146632102573402 1 0.215157747268677 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993825 chr19:49993817 nonsynonymous SNV 0.945 0 13 hm5C_associated_SNPs_39264 0 0 1 0 2 RPL13A chr19:49993732 3'AG 49993732 Downstream 86bp
chr19 49993817 49993817 1 + C A UCEC 49993825 + 49993805 49993845 41 CAGCCGCATCTTCTGGCGGACCGTGCGAGGTGAGCAGAGCG CAGCCGCATCTTATGGCGGACCGTGCGAGGTGAGCAGAGCG < 41bp 1 0.146632102573402 1 0.215157747268677 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993825 chr19:49993817 nonsynonymous SNV 0.945 0 13 hm5C_associated_SNPs_39264 0 0 1 0 2 RPL13A chr19:49993833 5'GT 49993833 Upstream 17bp
chr13 114541073 114541073 1 - G A UCEC 114541062 - 114541042 114541082 41 CAGCGGCTTCGAGCTCTCCTCTGATGGCAGGACCTGCCAAG CAGCGGCTTTGAGCTCTCCTCTGATGGCAGGACCTGCCAAG < 41bp 1 0.520697988781786 1 0.269302636384964 experiment 0.958604022436429 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GAS6 ENSG00000183087 CDS Human protein_coding chr13:114541062 chr13:114541073 synonymous SNV . 0 10 hm5C_associated_SNPs_39265 0 0 1 0 2 GAS6 chr13:114541042 5'GT 114541042 Upstream 32bp
chr13 114541073 114541073 1 - G A UCEC 114541062 - 114541042 114541082 41 CAGCGGCTTCGAGCTCTCCTCTGATGGCAGGACCTGCCAAG CAGCGGCTTTGAGCTCTCCTCTGATGGCAGGACCTGCCAAG < 41bp 1 0.520697988781786 1 0.269302636384964 experiment 0.958604022436429 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GAS6 ENSG00000183087 CDS Human protein_coding chr13:114541062 chr13:114541073 synonymous SNV . 0 10 hm5C_associated_SNPs_39265 0 0 1 0 2 GAS6 chr13:114541164 3'AG 114541164 Downstream 92bp
chr1 117626674 117626674 1 + C A UCEC 117626677 + 117626657 117626697 41 TCCCATGGAACACTAATCATCTGTCCTGCCTCCCTGATCCA TCCCATGGAACACTAATAATCTGTCCTGCCTCCCTGATCCA < 41bp 1 0.202533107764277 1 0.0795698761940002 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117626677 chr1:117626674 synonymous SNV . 0 18 hm5C_associated_SNPs_39266 0 0 1 0 1 TTF2 chr1:117626640 3'AG 117626640 Downstream 35bp
chr2 37319136 37319136 1 + C A UCEC 37319120 + 37319100 37319140 41 GCAGAGGAAAAATTGGAAAGCTACAGAAAAAAGATTCACAT GCAGAGGAAAAATTGGAAAGCTACAGAAAAAAGATTAACAT < 41bp 1 0.795311930222099 1 0.413083702325821 experiment 0.409376139555802 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GPATCH11 ENSG00000152133 CDS Human protein_coding chr2:37319120 chr2:37319136 nonsynonymous SNV 0.971 1 37 hm5C_associated_SNPs_39270 0 0 1 0 2 GPATCH11 chr2:37319059 3'AG 37319059 Downstream 78bp
chr2 37319136 37319136 1 + C A UCEC 37319120 + 37319100 37319140 41 GCAGAGGAAAAATTGGAAAGCTACAGAAAAAAGATTCACAT GCAGAGGAAAAATTGGAAAGCTACAGAAAAAAGATTAACAT < 41bp 1 0.795311930222099 1 0.413083702325821 experiment 0.409376139555802 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GPATCH11 ENSG00000152133 CDS Human protein_coding chr2:37319120 chr2:37319136 nonsynonymous SNV 0.971 1 37 hm5C_associated_SNPs_39270 0 0 1 0 2 GPATCH11 chr2:37319179 5'GT 37319179 Upstream 44bp
chr5 145641095 145641095 1 + A C UCEC 145641091 + 145641071 145641111 41 AGGTTGCTTTTAAGGGTGACCCAGAAGCAGCCCTAATCCAA AGGTTGCTTTTAAGGGTGACCCAGCAGCAGCCCTAATCCAA < 41bp 1 0.113594659765116 1 0.292497396469116 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM27 ENSG00000091009 CDS Human protein_coding chr5:145641091 chr5:145641095 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_39271 0 0 1 0 1 RBM27 chr5:145641073 3'AG 145641073 Downstream 23bp
chr5 179151766 179151766 1 + G T UCEC 179151747 + 179151727 179151767 41 GAGAAGGAAGAGGAAAAGGACAAGGGAGATGAGGAGGAGGA GAGAAGGAAGAGGAAAAGGACAAGGGAGATGAGGAGGAGTA < 41bp 1 0.788314614815866 1 0.593263387680054 experiment 0.423370770368267 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151747 chr5:179151766 stopgain 0.736 0 40 hm5C_associated_SNPs_39272 0 0 1 0 1 CANX chr5:179151784 5'GT 179151784 Upstream 19bp
chr5 179151766 179151766 1 + G T UCEC 179151781 + 179151761 179151801 41 AGGAGGAAGGAGAAGAGAAACTTGGTAAGAAACAGAGTCCA AGGAGTAAGGAGAAGAGAAACTTGGTAAGAAACAGAGTCCA < 41bp 1 0.694334343536083 1 0.32880049943924 experiment 0.611331312927835 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179151781 chr5:179151766 stopgain 0.736 0 6 hm5C_associated_SNPs_39273 0 0 1 0 1 CANX chr5:179151784 5'GT 179151784 Upstream 19bp
chr19 40883729 40883729 1 + C T UCEC 40883722 + 40883702 40883742 41 GTGGTCCCCGCGGATGAGGCCCAGGCTCGAATCCCATATGC GTGGTCCCCGCGGATGAGGCCCAGGCTTGAATCCCATATGC < 41bp 1 0.454914810842786 1 0.389963030815125 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40883722 chr19:40883729 stopgain 0.948 1 28 hm5C_associated_SNPs_39274 0 0 1 0 2 PLD3 chr19:40883693 3'AG 40883693 Downstream 37bp
chr19 40883729 40883729 1 + C T UCEC 40883722 + 40883702 40883742 41 GTGGTCCCCGCGGATGAGGCCCAGGCTCGAATCCCATATGC GTGGTCCCCGCGGATGAGGCCCAGGCTTGAATCCCATATGC < 41bp 1 0.454914810842786 1 0.389963030815125 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40883722 chr19:40883729 stopgain 0.948 1 28 hm5C_associated_SNPs_39274 0 0 1 0 2 PLD3 chr19:40883792 5'GT 40883792 Upstream 64bp
chr19 40883729 40883729 1 + C T UCEC 40883723 + 40883703 40883743 41 TGGTCCCCGCGGATGAGGCCCAGGCTCGAATCCCATATGCC TGGTCCCCGCGGATGAGGCCCAGGCTTGAATCCCATATGCC < 41bp 1 0.412404604426341 1 0.530036926269531 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40883723 chr19:40883729 stopgain 0.948 1 27 hm5C_associated_SNPs_39275 0 0 1 0 2 PLD3 chr19:40883693 3'AG 40883693 Downstream 37bp
chr19 40883729 40883729 1 + C T UCEC 40883723 + 40883703 40883743 41 TGGTCCCCGCGGATGAGGCCCAGGCTCGAATCCCATATGCC TGGTCCCCGCGGATGAGGCCCAGGCTTGAATCCCATATGCC < 41bp 1 0.412404604426341 1 0.530036926269531 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40883723 chr19:40883729 stopgain 0.948 1 27 hm5C_associated_SNPs_39275 0 0 1 0 2 PLD3 chr19:40883792 5'GT 40883792 Upstream 64bp
chr9 131847011 131847011 1 + C T UCEC 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTTGTGACCCT < 41bp 1 0.506633918966899 1 0.49877342581749 experiment 0.986732162066202 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131847011 synonymous SNV . 0 33 hm5C_associated_SNPs_39276 0 0 1 0 2 DOLPP1 chr9:131846947 3'AG 131846947 Downstream 65bp
chr9 131847011 131847011 1 + C T UCEC 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTTGTGACCCT < 41bp 1 0.506633918966899 1 0.49877342581749 experiment 0.986732162066202 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131847011 synonymous SNV . 0 33 hm5C_associated_SNPs_39276 0 0 1 0 2 DOLPP1 chr9:131847047 5'GT 131847047 Upstream 37bp
chr9 71866047 71866047 1 + G A UCEC 71866051 + 71866031 71866071 41 TAATGAAACTCCTGGGGCATCTACCAAAGGTTATCCTCCTC TAATGAAACTCCTGGGACATCTACCAAAGGTTATCCTCCTC < 41bp 1 0.255681433159318 1 0.362232267856598 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TJP2 ENSG00000119139 CDS Human protein_coding chr9:71866051 chr9:71866047 nonsynonymous SNV 0.007 0 17 hm5C_associated_SNPs_39277 0 0 0 0 1 TJP2 chr9:71865951 3'AG 71865951 Downstream 97bp
chr12 53858594 53858594 1 + G A UCEC 53858580 + 53858560 53858600 41 GCAGCGACAGTGCGAGCTTTCCCCACACCACCCCGTCCATG GCAGCGACAGTGCGAGCTTTCCCCACACCACCCCATCCATG < 41bp 1 0.774237192231189 1 0.245456993579865 experiment 0.451525615537623 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCBP2 ENSG00000197111 CDS Human protein_coding chr12:53858580 chr12:53858594 synonymous SNV . 0 35 hm5C_associated_SNPs_39278 0 0 1 0 2 PCBP2 chr12:53858544 3'AG 53858544 Downstream 51bp
chr12 53858594 53858594 1 + G A UCEC 53858580 + 53858560 53858600 41 GCAGCGACAGTGCGAGCTTTCCCCACACCACCCCGTCCATG GCAGCGACAGTGCGAGCTTTCCCCACACCACCCCATCCATG < 41bp 1 0.774237192231189 1 0.245456993579865 experiment 0.451525615537623 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCBP2 ENSG00000197111 CDS Human protein_coding chr12:53858580 chr12:53858594 synonymous SNV . 0 35 hm5C_associated_SNPs_39278 0 0 1 0 2 PCBP2 chr12:53858636 5'GT 53858636 Upstream 43bp
chr12 53858594 53858594 1 + G A UCEC 53858583 + 53858563 53858603 41 GCGACAGTGCGAGCTTTCCCCACACCACCCCGTCCATGTGC GCGACAGTGCGAGCTTTCCCCACACCACCCCATCCATGTGC < 41bp 1 0.542784681957131 1 0.3618323802948 experiment 0.914430636085739 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCBP2 ENSG00000197111 CDS Human protein_coding chr12:53858583 chr12:53858594 synonymous SNV . 0 32 hm5C_associated_SNPs_39279 0 0 1 0 2 PCBP2 chr12:53858544 3'AG 53858544 Downstream 51bp
chr12 53858594 53858594 1 + G A UCEC 53858583 + 53858563 53858603 41 GCGACAGTGCGAGCTTTCCCCACACCACCCCGTCCATGTGC GCGACAGTGCGAGCTTTCCCCACACCACCCCATCCATGTGC < 41bp 1 0.542784681957131 1 0.3618323802948 experiment 0.914430636085739 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCBP2 ENSG00000197111 CDS Human protein_coding chr12:53858583 chr12:53858594 synonymous SNV . 0 32 hm5C_associated_SNPs_39279 0 0 1 0 2 PCBP2 chr12:53858636 5'GT 53858636 Upstream 43bp
chr12 53858594 53858594 1 + G A UCEC 53858610 + 53858590 53858630 41 CCCCGTCCATGTGCCTCAACCCTGACCTGGAGGGACCACCT CCCCATCCATGTGCCTCAACCCTGACCTGGAGGGACCACCT < 41bp 1 0.586887881627115 1 0.117970943450928 experiment 0.826224236745769 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCBP2 ENSG00000197111 CDS Human protein_coding chr12:53858610 chr12:53858594 synonymous SNV . 0 5 hm5C_associated_SNPs_39280 0 0 1 0 2 PCBP2 chr12:53858544 3'AG 53858544 Downstream 51bp
chr12 53858594 53858594 1 + G A UCEC 53858610 + 53858590 53858630 41 CCCCGTCCATGTGCCTCAACCCTGACCTGGAGGGACCACCT CCCCATCCATGTGCCTCAACCCTGACCTGGAGGGACCACCT < 41bp 1 0.586887881627115 1 0.117970943450928 experiment 0.826224236745769 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCBP2 ENSG00000197111 CDS Human protein_coding chr12:53858610 chr12:53858594 synonymous SNV . 0 5 hm5C_associated_SNPs_39280 0 0 1 0 2 PCBP2 chr12:53858636 5'GT 53858636 Upstream 43bp
chr1 55073624 55073624 1 + T C UCEC 55073619 + 55073599 55073639 41 CCCTTCCTTCACTCAGGGACCCCTATGTCATCGCGCTGAGG CCCTTCCTTCACTCAGGGACCCCTACGTCATCGCGCTGAGG < 41bp 1 0.0916854125324058 1 0.0309450328350067 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55073619 chr1:55073624 synonymous SNV . 0 26 hm5C_associated_SNPs_39282 0 0 0 0 1 ACOT11 chr1:55073615 3'AG 55073615 Downstream 10bp
chr7 100204078 100204078 1 + C T UCEC 100204090 + 100204070 100204110 41 GTCCAGTTCGTCTCAGATCTCAGTGTCACCGCTGATGGCTT GTCCAGTTTGTCTCAGATCTCAGTGTCACCGCTGATGGCTT < 41bp 1 0.486238965542957 1 0.699552714824677 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100204090 chr7:100204078 synonymous SNV . 0 9 hm5C_associated_SNPs_39283 0 0 1 0 1 PCOLCE chr7:100204039 3'AG 100204039 Downstream 40bp
chr9 132630326 132630326 1 + G A UCEC 132630317 + 132630297 132630337 41 TCCTTCGCTGCCTGATGGACCAGCTGCACGAGGAGCTCAAG TCCTTCGCTGCCTGATGGACCAGCTGCACAAGGAGCTCAAG < 41bp 1 0.394584972165939 1 0.686662375926971 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP20 ENSG00000136878 CDS Human protein_coding chr9:132630317 chr9:132630326 nonsynonymous SNV 0.993 4 30 hm5C_associated_SNPs_39285 0 0 1 0 1 USP20 chr9:132630284 3'AG 132630284 Downstream 43bp
chr14 100934370 100934370 1 + G A UCEC 100934368 + 100934348 100934388 41 TTGCCTGCAGGTATGGAACGCCGTGGACTCCGGGCACTGCC TTGCCTGCAGGTATGGAACGCCATGGACTCCGGGCACTGCC < 41bp 1 0.133714294541619 1 0.37190979719162 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR25 ENSG00000176473 CDS Human protein_coding chr14:100934368 chr14:100934370 nonsynonymous SNV 0.245 2 23 hm5C_associated_SNPs_39286 0 0 0 0 1 WDR25 chr14:100934358 3'AG 100934358 Downstream 13bp
chr15 40509809 40509809 1 + C T UCEC 40509796 + 40509776 40509816 41 GTGCAGCTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGT GTGCAGCTGGATGTTTTTACCCTCAGCGGCTTTTGGACTGT < 41bp 1 0.342724712563609 1 0.158111393451691 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BUB1B ENSG00000156970;ENSG00000259288 CDS Human other chr15:40509796 chr15:40509809 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_39287 0 0 1 0 1 BUB1B chr15:40509868 5'GT 40509868 Upstream 60bp
chr15 40509809 40509809 1 + C T UCEC 40509802 + 40509782 40509822 41 CTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGTACAGAT CTGGATGTTTTTACCCTCAGCGGCTTTTGGACTGTACAGAT < 41bp 1 0.359859290212882 1 0.541620194911957 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BUB1B ENSG00000156970;ENSG00000259288 CDS Human other chr15:40509802 chr15:40509809 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_39288 0 0 1 0 1 BUB1B chr15:40509868 5'GT 40509868 Upstream 60bp
chr8 74893415 74893415 1 + G A UCEC 74893419 + 74893399 74893439 41 GTTTCTCTTATTCTACGAGTCTGATTGGCCTTACATTTCTG GTTTCTCTTATTCTACAAGTCTGATTGGCCTTACATTTCTG < 41bp 1 0.33446273187488 1 0.0806026756763458 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM70 ENSG00000175606 CDS Human protein_coding chr8:74893419 chr8:74893415 synonymous SNV . 0 17 hm5C_associated_SNPs_39289 0 0 1 0 1 TMEM70 chr8:74893390 3'AG 74893390 Downstream 26bp
chr14 104145701 104145701 1 + T A UCEC 104145710 + 104145690 104145730 41 GTCAAACCATTTTCCCCTGCCTGGCTCACAGGGTCTTGACA GTCAAACCATTATCCCCTGCCTGGCTCACAGGGTCTTGACA < 41bp 1 0.157882333223198 1 0.153084605932236 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLC1 ENSG00000126214 CDS Human protein_coding chr14:104145710 chr14:104145701 nonsynonymous SNV 0.014 1 12 hm5C_associated_SNPs_39290 0 0 1 0 1 KLC1 chr14:104145646 3'AG 104145646 Downstream 56bp
chr3 38284249 38284249 1 + G T UCEC 38284259 + 38284239 38284279 41 CCGAGTGAAAGAATCAATATCAAATTCTGAGGTAAGTAATT CCGAGTGAAATAATCAATATCAAATTCTGAGGTAAGTAATT < 41bp 1 0.113973914703836 1 0.173069059848785 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OXSR1 ENSG00000172939 CDS Human protein_coding chr3:38284259 chr3:38284249 stopgain 1.000 1 11 hm5C_associated_SNPs_39291 0 0 1 0 2 OXSR1 chr3:38284234 3'AG 38284234 Downstream 16bp
chr3 38284249 38284249 1 + G T UCEC 38284259 + 38284239 38284279 41 CCGAGTGAAAGAATCAATATCAAATTCTGAGGTAAGTAATT CCGAGTGAAATAATCAATATCAAATTCTGAGGTAAGTAATT < 41bp 1 0.113973914703836 1 0.173069059848785 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OXSR1 ENSG00000172939 CDS Human protein_coding chr3:38284259 chr3:38284249 stopgain 1.000 1 11 hm5C_associated_SNPs_39291 0 0 1 0 2 OXSR1 chr3:38284269 5'GT 38284269 Upstream 21bp
chrX 54838622 54838622 1 + G T UCEC 54838641 + 54838621 54838661 41 AGAATGACCACTTGTACATTCTTCTCAGCACCTTAGAGCCC ATAATGACCACTTGTACATTCTTCTCAGCACCTTAGAGCCC < 41bp 1 0.130708744261842 1 0.062288761138916 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54838641 chrX:54838622 nonsynonymous SNV 0.993 3 2 hm5C_associated_SNPs_39292 0 0 1 0 2 MAGED2 chrX:54838590 3'AG 54838590 Downstream 33bp
chrX 54838622 54838622 1 + G T UCEC 54838641 + 54838621 54838661 41 AGAATGACCACTTGTACATTCTTCTCAGCACCTTAGAGCCC ATAATGACCACTTGTACATTCTTCTCAGCACCTTAGAGCCC < 41bp 1 0.130708744261842 1 0.062288761138916 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54838641 chrX:54838622 nonsynonymous SNV 0.993 3 2 hm5C_associated_SNPs_39292 0 0 1 0 2 MAGED2 chrX:54838684 5'GT 54838684 Upstream 63bp
chr11 66294147 66294147 1 + A C UCEC 66294153 + 66294133 66294173 41 CATCAAGATCCTGAAGCGTACAGCAGTGTTTGTAGAGGGAG CATCAAGATCCTGACGCGTACAGCAGTGTTTGTAGAGGGAG < 41bp 1 0.748680619258611 1 0.155292749404907 experiment 0.502638761482778 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66294153 chr11:66294147 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_39296 0 0 1 0 1 BBS1 chr11:66294120 3'AG 66294120 Downstream 28bp
chrX 135291494 135291494 1 + C T UCEC 135291501 + 135291481 135291521 41 TCTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATC TCTCACCCTGTTTTCCAGCGCCAACCTCCGGGGCAGGCATC < 41bp 1 0.0758857350211092 1 0.174462080001831 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291501 chrX:135291494 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_39298 0 0 0 0 1 FHL1 chrX:135291402 3'AG 135291402 Downstream 93bp
chrX 135291494 135291494 1 + C T UCEC 135291502 + 135291482 135291522 41 CTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATCC CTCACCCTGTTTTCCAGCGCCAACCTCCGGGGCAGGCATCC < 41bp 1 0.184481272613399 1 0.142223358154297 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291502 chrX:135291494 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_39299 0 0 0 0 1 FHL1 chrX:135291402 3'AG 135291402 Downstream 93bp
chr19 7598523 7598523 1 + C T UCEC 7598504 + 7598484 7598524 41 GGCAAGTTCCGCCGCGGGAGCGGCTCGGCCTGCAGCCTTCT GGCAAGTTCCGCCGCGGGAGCGGCTCGGCCTGCAGCCTTTT < 41bp 1 0.475069847823447 1 0.0567980110645294 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCOLN1 ENSG00000090674;ENSG00000268614 CDS Human other chr19:7598504 chr19:7598523 nonsynonymous SNV 0.935 1 40 hm5C_associated_SNPs_39300 0 0 0 0 1 MCOLN1 chr19:7598539 5'GT 7598539 Upstream 17bp
chr19 7598523 7598523 1 + C T UCEC 7598534 + 7598514 7598554 41 TGCAGCCTTCTCTGCTGCTGCGGAAGGTTCGAGTCCCGGGT TGCAGCCTTTTCTGCTGCTGCGGAAGGTTCGAGTCCCGGGT < 41bp 1 0.70157809763871 1 0.725752413272858 experiment 0.59684380472258 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCOLN1 ENSG00000090674;ENSG00000268614 CDS Human other chr19:7598534 chr19:7598523 nonsynonymous SNV 0.935 1 10 hm5C_associated_SNPs_39301 0 0 0 0 1 MCOLN1 chr19:7598539 5'GT 7598539 Upstream 17bp
chr13 100188896 100188896 1 + G A UCEC 100188911 + 100188891 100188931 41 GTTACGATGTTGAAGATGGTCAGAGGTTCTGTAATCCTGGA GTTACAATGTTGAAGATGGTCAGAGGTTCTGTAATCCTGGA < 41bp 1 0.766903989500504 1 0.346253991127014 experiment 0.466192020998991 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TM9SF2 ENSG00000125304 CDS Human protein_coding chr13:100188911 chr13:100188896 nonsynonymous SNV 0.883 1 6 hm5C_associated_SNPs_39303 0 0 1 0 1 TM9SF2 chr13:100188862 3'AG 100188862 Downstream 35bp
chr1 242030145 242030145 1 + G T UCEC 242030150 + 242030130 242030170 41 AGCCTGCCCATTCAAGAAGTCATAGTTGGGATGACAAAACA AGCCTGCCCATTCAATAAGTCATAGTTGGGATGACAAAACA < 41bp 1 0.241382639312012 1 0.0873810052871704 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXO1 ENSG00000174371 CDS Human protein_coding chr1:242030150 chr1:242030145 nonsynonymous SNV 0.837 4 16 hm5C_associated_SNPs_39306 0 0 1 0 1 EXO1 chr1:242030132 3'AG 242030132 Downstream 14bp
chr5 134154652 134154652 1 + G T UCEC 134154670 + 134154650 134154690 41 AAGAACCCAAGGAAGGCGAGCGGAAGATTTACTTGGCAATT AATAACCCAAGGAAGGCGAGCGGAAGATTTACTTGGCAATT < 41bp 1 0.661936254514615 1 0.758071184158325 experiment 0.67612749097077 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134154670 chr5:134154652 stopgain 1.000 1 3 hm5C_associated_SNPs_39310 0 0 1 0 1 DDX46 chr5:134154694 5'GT 134154694 Upstream 43bp
chr7 139094334 139094334 1 + A C UCEC 139094319 + 139094299 139094339 41 TGTTTTTAAGAGAGTCGTAGCTGAGAAGCAGGAGAAAAGAA TGTTTTTAAGAGAGTCGTAGCTGAGAAGCAGGAGACAAGAA < 41bp 1 0.517163113256059 1 0.208913445472717 experiment 0.965673773487882 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094319 chr7:139094334 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_39312 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 26bp
chr7 139094334 139094334 1 + A C UCEC 139094319 + 139094299 139094339 41 TGTTTTTAAGAGAGTCGTAGCTGAGAAGCAGGAGAAAAGAA TGTTTTTAAGAGAGTCGTAGCTGAGAAGCAGGAGACAAGAA < 41bp 1 0.517163113256059 1 0.208913445472717 experiment 0.965673773487882 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094319 chr7:139094334 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_39312 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 67bp
chr7 139094334 139094334 1 + A C UCEC 139094341 + 139094321 139094361 41 GAGAAGCAGGAGAAAAGAAACCAGGAACGGCTGAAACGAAG GAGAAGCAGGAGACAAGAAACCAGGAACGGCTGAAACGAAG < 41bp 1 0.525000644875443 1 0.446681946516037 experiment 0.949998710249113 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094341 chr7:139094334 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_39313 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 26bp
chr7 139094334 139094334 1 + A C UCEC 139094341 + 139094321 139094361 41 GAGAAGCAGGAGAAAAGAAACCAGGAACGGCTGAAACGAAG GAGAAGCAGGAGACAAGAAACCAGGAACGGCTGAAACGAAG < 41bp 1 0.525000644875443 1 0.446681946516037 experiment 0.949998710249113 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094341 chr7:139094334 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_39313 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 67bp
chr7 139094334 139094334 1 + A C UCEC 139094348 + 139094328 139094368 41 AGGAGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAG AGGAGACAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAG < 41bp 1 0.486530027729093 1 0.292359709739685 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094348 chr7:139094334 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_39314 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 26bp
chr7 139094334 139094334 1 + A C UCEC 139094348 + 139094328 139094368 41 AGGAGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAG AGGAGACAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAG < 41bp 1 0.486530027729093 1 0.292359709739685 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094348 chr7:139094334 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_39314 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 67bp
chr7 139094334 139094334 1 + A C UCEC 139094351 + 139094331 139094371 41 AGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGA AGACAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGA < 41bp 1 0.524529168214895 1 0.4171122610569 experiment 0.95094166357021 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094351 chr7:139094334 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_39315 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 26bp
chr7 139094334 139094334 1 + A C UCEC 139094351 + 139094331 139094371 41 AGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGA AGACAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGA < 41bp 1 0.524529168214895 1 0.4171122610569 experiment 0.95094166357021 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094351 chr7:139094334 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_39315 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 67bp
chr16 1550429 1550429 1 + A G UCEC 1550440 + 1550420 1550460 41 CACGTCAGCAAGGCTGTCCTCATCTGCCTGGCGCAACTCGG CACGTCAGCGAGGCTGTCCTCATCTGCCTGGCGCAACTCGG < 41bp 1 0.364116802795205 1 0.266157776117325 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1550440 chr16:1550429 nonsynonymous SNV 0.654 3 10 hm5C_associated_SNPs_39320 0 0 1 0 2 TELO2 chr16:1550348 3'AG 1550348 Downstream 82bp
chr16 1550429 1550429 1 + A G UCEC 1550440 + 1550420 1550460 41 CACGTCAGCAAGGCTGTCCTCATCTGCCTGGCGCAACTCGG CACGTCAGCGAGGCTGTCCTCATCTGCCTGGCGCAACTCGG < 41bp 1 0.364116802795205 1 0.266157776117325 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1550440 chr16:1550429 nonsynonymous SNV 0.654 3 10 hm5C_associated_SNPs_39320 0 0 1 0 2 TELO2 chr16:1550489 5'GT 1550489 Upstream 61bp
chr1 23208861 23208861 1 + C T UCEC 23208855 + 23208835 23208875 41 TCTGGCCTCTCTTCCAGCTCCATCGGCAGTGTCCATCATGC TCTGGCCTCTCTTCCAGCTCCATCGGTAGTGTCCATCATGC < 41bp 1 0.21421250869656 1 0.0624884068965912 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23208855 chr1:23208861 nonsynonymous SNV 0.827 0 27 hm5C_associated_SNPs_39323 0 0 0 0 1 EPHB2 chr1:23208852 3'AG 23208852 Downstream 10bp
chr17 45673810 45673810 1 + T G UCEC 45673802 + 45673782 45673822 41 GGACCAAACAAATGGGATTTCCCCTCATTTATGTGGAAGCT GGACCAAACAAATGGGATTTCCCCTCATGTATGTGGAAGCT < 41bp 1 0.142187886136834 1 0.0602296888828278 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45673802 chr17:45673810 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_39325 0 0 1 0 2 NPEPPS chr17:45673719 3'AG 45673719 Downstream 92bp
chr17 45673810 45673810 1 + T G UCEC 45673802 + 45673782 45673822 41 GGACCAAACAAATGGGATTTCCCCTCATTTATGTGGAAGCT GGACCAAACAAATGGGATTTCCCCTCATGTATGTGGAAGCT < 41bp 1 0.142187886136834 1 0.0602296888828278 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45673802 chr17:45673810 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_39325 0 0 1 0 2 NPEPPS chr17:45673828 5'GT 45673828 Upstream 19bp
chr19 40718801 40718801 1 + G T UCEC 40718786 + 40718766 40718806 41 GGACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTG GGACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAATAACTG < 41bp 1 0.057309593311509 1 0.108490735292435 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718786 chr19:40718801 stopgain 1.000 0 36 hm5C_associated_SNPs_39326 0 0 1 0 2 MAP3K10 chr19:40718712 3'AG 40718712 Downstream 90bp
chr19 40718801 40718801 1 + G T UCEC 40718786 + 40718766 40718806 41 GGACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTG GGACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAATAACTG < 41bp 1 0.057309593311509 1 0.108490735292435 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718786 chr19:40718801 stopgain 1.000 0 36 hm5C_associated_SNPs_39326 0 0 1 0 2 MAP3K10 chr19:40718883 5'GT 40718883 Upstream 83bp
chr19 40718801 40718801 1 + G T UCEC 40718787 + 40718767 40718807 41 GACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGG GACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAATAACTGG < 41bp 1 0.215891286820969 1 0.414656341075897 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718787 chr19:40718801 stopgain 1.000 0 35 hm5C_associated_SNPs_39327 0 0 1 0 2 MAP3K10 chr19:40718712 3'AG 40718712 Downstream 90bp
chr19 40718801 40718801 1 + G T UCEC 40718787 + 40718767 40718807 41 GACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGG GACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAATAACTGG < 41bp 1 0.215891286820969 1 0.414656341075897 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718787 chr19:40718801 stopgain 1.000 0 35 hm5C_associated_SNPs_39327 0 0 1 0 2 MAP3K10 chr19:40718883 5'GT 40718883 Upstream 83bp
chr19 40718801 40718801 1 + G T UCEC 40718788 + 40718768 40718808 41 ACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGT ACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAATAACTGGT < 41bp 1 0.226693283368256 1 0.630755841732025 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718788 chr19:40718801 stopgain 1.000 0 34 hm5C_associated_SNPs_39328 0 0 1 0 2 MAP3K10 chr19:40718712 3'AG 40718712 Downstream 90bp
chr19 40718801 40718801 1 + G T UCEC 40718788 + 40718768 40718808 41 ACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGT ACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAATAACTGGT < 41bp 1 0.226693283368256 1 0.630755841732025 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718788 chr19:40718801 stopgain 1.000 0 34 hm5C_associated_SNPs_39328 0 0 1 0 2 MAP3K10 chr19:40718883 5'GT 40718883 Upstream 83bp
chr19 40718801 40718801 1 + G T UCEC 40718789 + 40718769 40718809 41 CATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGTC CATGGAGCCGCGGTGGGCCCCCAAAGAAGGAATAACTGGTC < 41bp 1 0.208688356490712 1 0.655530154705048 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718789 chr19:40718801 stopgain 1.000 0 33 hm5C_associated_SNPs_39329 0 0 1 0 2 MAP3K10 chr19:40718712 3'AG 40718712 Downstream 90bp
chr19 40718801 40718801 1 + G T UCEC 40718789 + 40718769 40718809 41 CATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGTC CATGGAGCCGCGGTGGGCCCCCAAAGAAGGAATAACTGGTC < 41bp 1 0.208688356490712 1 0.655530154705048 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718789 chr19:40718801 stopgain 1.000 0 33 hm5C_associated_SNPs_39329 0 0 1 0 2 MAP3K10 chr19:40718883 5'GT 40718883 Upstream 83bp
chr19 40718801 40718801 1 + G T UCEC 40718790 + 40718770 40718810 41 ATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGTCG ATGGAGCCGCGGTGGGCCCCCAAAGAAGGAATAACTGGTCG < 41bp 1 0.3591679400741 1 0.823045134544373 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718790 chr19:40718801 stopgain 1.000 0 32 hm5C_associated_SNPs_39330 0 0 1 0 2 MAP3K10 chr19:40718712 3'AG 40718712 Downstream 90bp
chr19 40718801 40718801 1 + G T UCEC 40718790 + 40718770 40718810 41 ATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGTCG ATGGAGCCGCGGTGGGCCCCCAAAGAAGGAATAACTGGTCG < 41bp 1 0.3591679400741 1 0.823045134544373 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718790 chr19:40718801 stopgain 1.000 0 32 hm5C_associated_SNPs_39330 0 0 1 0 2 MAP3K10 chr19:40718883 5'GT 40718883 Upstream 83bp
chr17 46940286 46940286 1 + C A UCEC 46940294 + 46940274 46940314 41 GCCCCTTTGTTTCAATTGTCCAATTTGTGACAAGATCTTCC GCCCCTTTGTTTAAATTGTCCAATTTGTGACAAGATCTTCC < 41bp 1 0.114108801456432 1 0.141927272081375 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CALCOCO2 ENSG00000136436 CDS Human protein_coding chr17:46940294 chr17:46940286 nonsynonymous SNV 0.731 0 13 hm5C_associated_SNPs_39333 0 0 1 0 1 CALCOCO2 chr17:46940200 3'AG 46940200 Downstream 87bp
chr13 113487180 113487180 1 + G A UCEC 113487177 + 113487157 113487197 41 GAACTGCTTTTTTATAGGAGCGCGAGGAGCTGTTTTTCCGG GAACTGCTTTTTTATAGGAGCGCAAGGAGCTGTTTTTCCGG < 41bp 1 0.429284512597813 1 0.30789703130722 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP11A ENSG00000068650 CDS Human protein_coding chr13:113487177 chr13:113487180 nonsynonymous SNV 0.605 3 24 hm5C_associated_SNPs_39334 0 0 1 0 1 ATP11A chr13:113487174 3'AG 113487174 Downstream 7bp
chr19 48259803 48259803 1 + C T UCEC 48259799 + 48259779 48259819 41 CTGTAGCCCGAGGGCAACATCCTTCGAGACCGGTTCAAGAG CTGTAGCCCGAGGGCAACATCCTTTGAGACCGGTTCAAGAG < 41bp 1 0.0744638895625909 1 0.145956605672836 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259799 chr19:48259803 stopgain 0.513 0 25 hm5C_associated_SNPs_39335 0 0 1 0 2 NOP53 chr19:48259785 3'AG 48259785 Downstream 19bp
chr19 48259803 48259803 1 + C T UCEC 48259799 + 48259779 48259819 41 CTGTAGCCCGAGGGCAACATCCTTCGAGACCGGTTCAAGAG CTGTAGCCCGAGGGCAACATCCTTTGAGACCGGTTCAAGAG < 41bp 1 0.0744638895625909 1 0.145956605672836 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259799 chr19:48259803 stopgain 0.513 0 25 hm5C_associated_SNPs_39335 0 0 1 0 2 NOP53 chr19:48259861 5'GT 48259861 Upstream 59bp
chr6 44274729 44274729 1 - G T UCEC 44274726 - 44274706 44274746 41 CGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC CGTCGAGCTGTGCGTTTATCCATGGAGATCTTAAAGGCACC < 41bp 1 0.607874706809528 1 0.825486660003662 experiment 0.784250586380944 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human protein_coding chr6:44274726 chr6:44274729 nonsynonymous SNV 0.148 2 18 hm5C_associated_SNPs_39336 0 0 1 0 2 AARS2 chr6:44274660 5'GT 44274660 Upstream 70bp
chr6 44274729 44274729 1 - G T UCEC 44274726 - 44274706 44274746 41 CGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC CGTCGAGCTGTGCGTTTATCCATGGAGATCTTAAAGGCACC < 41bp 1 0.607874706809528 1 0.825486660003662 experiment 0.784250586380944 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human other chr6:44274726 chr6:44274729 nonsynonymous SNV 0.148 2 18 hm5C_associated_SNPs_39336 0 0 1 0 2 AARS2 chr6:44274768 3'AG 44274768 Downstream 40bp
chr3 124160811 124160811 1 + G A UCEC 124160800 + 124160780 124160820 41 TGTCTTTCGCAGGCCTGCACCCTGGCTCGGCGGAATGCTGA TGTCTTTCGCAGGCCTGCACCCTGGCTCGGCAGAATGCTGA < 41bp 1 0.11428918198221 1 0.528160929679871 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient KALRN ENSG00000160145 CDS Human protein_coding chr3:124160800 chr3:124160811 nonsynonymous SNV 0.963 4 32 hm5C_associated_SNPs_39337 0 0 0 0 2 KALRN chr3:124160792 3'AG 124160792 Downstream 20bp
chr3 124160811 124160811 1 + G A UCEC 124160800 + 124160780 124160820 41 TGTCTTTCGCAGGCCTGCACCCTGGCTCGGCGGAATGCTGA TGTCTTTCGCAGGCCTGCACCCTGGCTCGGCAGAATGCTGA < 41bp 1 0.11428918198221 1 0.528160929679871 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient KALRN ENSG00000160145 CDS Human protein_coding chr3:124160800 chr3:124160811 nonsynonymous SNV 0.963 4 32 hm5C_associated_SNPs_39337 0 0 0 0 2 KALRN chr3:124160906 5'GT 124160906 Upstream 96bp
chr1 231401114 231401114 1 + G A UCEC 231401132 + 231401112 231401152 41 TGGCAATAAACTCTACTGGGCTGTATTCTCTGAATATGTAA TGACAATAAACTCTACTGGGCTGTATTCTCTGAATATGTAA < 41bp 1 0.388008004463519 1 0.0419053137302399 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231401132 chr1:231401114 nonsynonymous SNV 0.998 2 3 hm5C_associated_SNPs_39340 0 0 1 0 2 GNPAT chr1:231401039 3'AG 231401039 Downstream 76bp
chr1 231401114 231401114 1 + G A UCEC 231401132 + 231401112 231401152 41 TGGCAATAAACTCTACTGGGCTGTATTCTCTGAATATGTAA TGACAATAAACTCTACTGGGCTGTATTCTCTGAATATGTAA < 41bp 1 0.388008004463519 1 0.0419053137302399 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231401132 chr1:231401114 nonsynonymous SNV 0.998 2 3 hm5C_associated_SNPs_39340 0 0 1 0 2 GNPAT chr1:231401166 5'GT 231401166 Upstream 53bp
chr20 3520943 3520943 1 + A T UCEC 3520926 + 3520906 3520946 41 GCTACAGAGTGTAGTTGGGACCATTTATATGTTTATGATGG GCTACAGAGTGTAGTTGGGACCATTTATATGTTTATGTTGG < 41bp 1 0.0197781113786359 1 0.106897234916687 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATRN ENSG00000088812 CDS Human protein_coding chr20:3520926 chr20:3520943 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_39341 0 0 1 0 2 ATRN chr20:3520869 3'AG 3520869 Downstream 75bp
chr20 3520943 3520943 1 + A T UCEC 3520926 + 3520906 3520946 41 GCTACAGAGTGTAGTTGGGACCATTTATATGTTTATGATGG GCTACAGAGTGTAGTTGGGACCATTTATATGTTTATGTTGG < 41bp 1 0.0197781113786359 1 0.106897234916687 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATRN ENSG00000088812 CDS Human protein_coding chr20:3520926 chr20:3520943 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_39341 0 0 1 0 2 ATRN chr20:3520982 5'GT 3520982 Upstream 40bp
chr7 6631412 6631412 1 + C T UCEC 6631401 + 6631381 6631421 41 CAGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCT CAGCCCTCAAGGGAACAAAGCCGATGACAGCTGGATGAGCT < 41bp 1 0.16843910611285 1 0.35232800245285 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631401 chr7:6631412 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_39342 0 0 1 0 2 C7orf26 chr7:6631334 3'AG 6631334 Downstream 79bp
chr7 6631412 6631412 1 + C T UCEC 6631401 + 6631381 6631421 41 CAGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCT CAGCCCTCAAGGGAACAAAGCCGATGACAGCTGGATGAGCT < 41bp 1 0.16843910611285 1 0.35232800245285 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631401 chr7:6631412 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_39342 0 0 1 0 2 C7orf26 chr7:6631498 5'GT 6631498 Upstream 87bp
chr7 6631412 6631412 1 + C T UCEC 6631402 + 6631382 6631422 41 AGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCTT AGCCCTCAAGGGAACAAAGCCGATGACAGCTGGATGAGCTT < 41bp 1 0.376946984260668 1 0.517792344093323 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631402 chr7:6631412 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_39343 0 0 1 0 2 C7orf26 chr7:6631334 3'AG 6631334 Downstream 79bp
chr7 6631412 6631412 1 + C T UCEC 6631402 + 6631382 6631422 41 AGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCTT AGCCCTCAAGGGAACAAAGCCGATGACAGCTGGATGAGCTT < 41bp 1 0.376946984260668 1 0.517792344093323 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631402 chr7:6631412 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_39343 0 0 1 0 2 C7orf26 chr7:6631498 5'GT 6631498 Upstream 87bp
chr12 6979520 6979520 1 + C A UCEC 6979504 + 6979484 6979524 41 CTTCCTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGG CTTCCTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTAGTGG < 41bp 1 0.118357918804843 1 0.0448572635650635 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979504 chr12:6979520 nonsynonymous SNV 0.976 4 37 hm5C_associated_SNPs_39352 0 0 1 0 1 TPI1 chr12:6979429 3'AG 6979429 Downstream 92bp
chr12 6979520 6979520 1 + C A UCEC 6979508 + 6979488 6979528 41 CTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGGACAT CTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTAGTGGACAT < 41bp 1 0.574196395797418 1 0.788998007774353 experiment 0.851607208405164 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979508 chr12:6979520 nonsynonymous SNV 0.976 4 33 hm5C_associated_SNPs_39353 0 0 1 0 1 TPI1 chr12:6979429 3'AG 6979429 Downstream 92bp
chr1 22333420 22333420 1 + G A UCEC 22333401 + 22333381 22333421 41 GCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGC GCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATAC < 41bp 1 0.740308213530076 1 0.197665452957153 experiment 0.519383572939849 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333401 chr1:22333420 nonsynonymous SNV 0.285 1 40 hm5C_associated_SNPs_39354 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 50bp
chr1 22333420 22333420 1 + G A UCEC 22333401 + 22333381 22333421 41 GCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGC GCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATAC < 41bp 1 0.740308213530076 1 0.197665452957153 experiment 0.519383572939849 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333401 chr1:22333420 nonsynonymous SNV 0.285 1 40 hm5C_associated_SNPs_39354 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 88bp
chr1 22333420 22333420 1 + G A UCEC 22333404 + 22333384 22333424 41 CTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGT CTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATACCGT < 41bp 1 0.244942341814472 1 0.12395167350769 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333404 chr1:22333420 nonsynonymous SNV 0.285 1 37 hm5C_associated_SNPs_39355 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 50bp
chr1 22333420 22333420 1 + G A UCEC 22333404 + 22333384 22333424 41 CTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGT CTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATACCGT < 41bp 1 0.244942341814472 1 0.12395167350769 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333404 chr1:22333420 nonsynonymous SNV 0.285 1 37 hm5C_associated_SNPs_39355 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 88bp
chr1 22333420 22333420 1 + G A UCEC 22333406 + 22333386 22333426 41 CATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCC CATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATACCGTCC < 41bp 1 0.327140609985656 1 0.0672116279602051 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333406 chr1:22333420 nonsynonymous SNV 0.285 1 35 hm5C_associated_SNPs_39356 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 50bp
chr1 22333420 22333420 1 + G A UCEC 22333406 + 22333386 22333426 41 CATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCC CATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATACCGTCC < 41bp 1 0.327140609985656 1 0.0672116279602051 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333406 chr1:22333420 nonsynonymous SNV 0.285 1 35 hm5C_associated_SNPs_39356 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 88bp
chr1 22333420 22333420 1 + G A UCEC 22333407 + 22333387 22333427 41 ATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCCA ATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATACCGTCCA < 41bp 1 0.247360710433921 1 0.145441979169846 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333407 chr1:22333420 nonsynonymous SNV 0.285 1 34 hm5C_associated_SNPs_39357 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 50bp
chr1 22333420 22333420 1 + G A UCEC 22333407 + 22333387 22333427 41 ATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCCA ATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATACCGTCCA < 41bp 1 0.247360710433921 1 0.145441979169846 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333407 chr1:22333420 nonsynonymous SNV 0.285 1 34 hm5C_associated_SNPs_39357 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 88bp
chr1 22333420 22333420 1 + G A UCEC 22333408 + 22333388 22333428 41 TCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCCAG TCAAGCTCTCACGCAGCGCCCAGCTGGGAGATACCGTCCAG < 41bp 1 0.686378932836609 1 0.30816251039505 experiment 0.627242134326782 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333408 chr1:22333420 nonsynonymous SNV 0.285 1 33 hm5C_associated_SNPs_39358 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 50bp
chr1 22333420 22333420 1 + G A UCEC 22333408 + 22333388 22333428 41 TCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCCAG TCAAGCTCTCACGCAGCGCCCAGCTGGGAGATACCGTCCAG < 41bp 1 0.686378932836609 1 0.30816251039505 experiment 0.627242134326782 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333408 chr1:22333420 nonsynonymous SNV 0.285 1 33 hm5C_associated_SNPs_39358 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 88bp
chr1 22333420 22333420 1 + G A UCEC 22333421 + 22333401 22333441 41 CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC CAGCGCCCAGCTGGGAGATACCGTCCAGCTCGCCTCACTCC < 41bp 1 0.119823591825638 1 0.216858983039856 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333421 chr1:22333420 nonsynonymous SNV 0.285 1 20 hm5C_associated_SNPs_39359 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 50bp
chr1 22333420 22333420 1 + G A UCEC 22333421 + 22333401 22333441 41 CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC CAGCGCCCAGCTGGGAGATACCGTCCAGCTCGCCTCACTCC < 41bp 1 0.119823591825638 1 0.216858983039856 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333421 chr1:22333420 nonsynonymous SNV 0.285 1 20 hm5C_associated_SNPs_39359 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 88bp
chr1 22333420 22333420 1 + G A UCEC 22333422 + 22333402 22333442 41 AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC AGCGCCCAGCTGGGAGATACCGTCCAGCTCGCCTCACTCCC < 41bp 1 0.410219601733739 1 0.363669335842133 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333422 chr1:22333420 nonsynonymous SNV 0.285 1 19 hm5C_associated_SNPs_39360 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 50bp
chr1 22333420 22333420 1 + G A UCEC 22333422 + 22333402 22333442 41 AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC AGCGCCCAGCTGGGAGATACCGTCCAGCTCGCCTCACTCCC < 41bp 1 0.410219601733739 1 0.363669335842133 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333422 chr1:22333420 nonsynonymous SNV 0.285 1 19 hm5C_associated_SNPs_39360 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 88bp
chr1 22333420 22333420 1 + G A UCEC 22333425 + 22333405 22333445 41 GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC GCCCAGCTGGGAGATACCGTCCAGCTCGCCTCACTCCCTCC < 41bp 1 0.375652317437518 1 0.162423074245453 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333425 chr1:22333420 nonsynonymous SNV 0.285 1 16 hm5C_associated_SNPs_39361 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 50bp
chr1 22333420 22333420 1 + G A UCEC 22333425 + 22333405 22333445 41 GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC GCCCAGCTGGGAGATACCGTCCAGCTCGCCTCACTCCCTCC < 41bp 1 0.375652317437518 1 0.162423074245453 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333425 chr1:22333420 nonsynonymous SNV 0.285 1 16 hm5C_associated_SNPs_39361 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 88bp
chr1 22333420 22333420 1 + G A UCEC 22333426 + 22333406 22333446 41 CCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCC CCCAGCTGGGAGATACCGTCCAGCTCGCCTCACTCCCTCCC < 41bp 1 0.563038300681093 1 0.570984661579132 experiment 0.873923398637815 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333426 chr1:22333420 nonsynonymous SNV 0.285 1 15 hm5C_associated_SNPs_39362 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 50bp
chr1 22333420 22333420 1 + G A UCEC 22333426 + 22333406 22333446 41 CCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCC CCCAGCTGGGAGATACCGTCCAGCTCGCCTCACTCCCTCCC < 41bp 1 0.563038300681093 1 0.570984661579132 experiment 0.873923398637815 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333426 chr1:22333420 nonsynonymous SNV 0.285 1 15 hm5C_associated_SNPs_39362 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 88bp
chr1 22333420 22333420 1 + G A UCEC 22333429 + 22333409 22333449 41 AGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCT AGCTGGGAGATACCGTCCAGCTCGCCTCACTCCCTCCCGCT < 41bp 1 0.547112932029562 1 0.460170179605484 experiment 0.905774135940876 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333429 chr1:22333420 nonsynonymous SNV 0.285 1 12 hm5C_associated_SNPs_39363 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 50bp
chr1 22333420 22333420 1 + G A UCEC 22333429 + 22333409 22333449 41 AGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCT AGCTGGGAGATACCGTCCAGCTCGCCTCACTCCCTCCCGCT < 41bp 1 0.547112932029562 1 0.460170179605484 experiment 0.905774135940876 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333429 chr1:22333420 nonsynonymous SNV 0.285 1 12 hm5C_associated_SNPs_39363 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 88bp
chr1 22333420 22333420 1 + G A UCEC 22333431 + 22333411 22333451 41 CTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGG CTGGGAGATACCGTCCAGCTCGCCTCACTCCCTCCCGCTGG < 41bp 1 0.661495275951104 1 0.476570069789886 experiment 0.677009448097792 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333431 chr1:22333420 nonsynonymous SNV 0.285 1 10 hm5C_associated_SNPs_39364 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 50bp
chr1 22333420 22333420 1 + G A UCEC 22333431 + 22333411 22333451 41 CTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGG CTGGGAGATACCGTCCAGCTCGCCTCACTCCCTCCCGCTGG < 41bp 1 0.661495275951104 1 0.476570069789886 experiment 0.677009448097792 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333431 chr1:22333420 nonsynonymous SNV 0.285 1 10 hm5C_associated_SNPs_39364 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 88bp
chr1 22333420 22333420 1 + G A UCEC 22333433 + 22333413 22333453 41 GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG GGGAGATACCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG < 41bp 1 0.235274826556642 1 0.0788281261920929 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333433 chr1:22333420 nonsynonymous SNV 0.285 1 8 hm5C_associated_SNPs_39365 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 50bp
chr1 22333420 22333420 1 + G A UCEC 22333433 + 22333413 22333453 41 GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG GGGAGATACCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG < 41bp 1 0.235274826556642 1 0.0788281261920929 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333433 chr1:22333420 nonsynonymous SNV 0.285 1 8 hm5C_associated_SNPs_39365 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 88bp
chr1 22333420 22333420 1 + G A UCEC 22333434 + 22333414 22333454 41 GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA GGAGATACCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA < 41bp 1 0.225696862598112 1 0.251235783100128 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333434 chr1:22333420 nonsynonymous SNV 0.285 1 7 hm5C_associated_SNPs_39366 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 50bp
chr1 22333420 22333420 1 + G A UCEC 22333434 + 22333414 22333454 41 GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA GGAGATACCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA < 41bp 1 0.225696862598112 1 0.251235783100128 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333434 chr1:22333420 nonsynonymous SNV 0.285 1 7 hm5C_associated_SNPs_39366 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 88bp
chr1 22333420 22333420 1 + G A UCEC 22333436 + 22333416 22333456 41 AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA AGATACCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA < 41bp 1 0.115416442695975 1 0.276130706071854 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333436 chr1:22333420 nonsynonymous SNV 0.285 1 5 hm5C_associated_SNPs_39367 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 50bp
chr1 22333420 22333420 1 + G A UCEC 22333436 + 22333416 22333456 41 AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA AGATACCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA < 41bp 1 0.115416442695975 1 0.276130706071854 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333436 chr1:22333420 nonsynonymous SNV 0.285 1 5 hm5C_associated_SNPs_39367 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 88bp
chr1 22333420 22333420 1 + G A UCEC 22333438 + 22333418 22333458 41 ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC ATACCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC < 41bp 1 0.34059506942122 1 0.156081914901733 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333438 chr1:22333420 nonsynonymous SNV 0.285 1 3 hm5C_associated_SNPs_39368 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 50bp
chr1 22333420 22333420 1 + G A UCEC 22333438 + 22333418 22333458 41 ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC ATACCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC < 41bp 1 0.34059506942122 1 0.156081914901733 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333438 chr1:22333420 nonsynonymous SNV 0.285 1 3 hm5C_associated_SNPs_39368 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 88bp
chr1 22333420 22333420 1 + G A UCEC 22333440 + 22333420 22333460 41 GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT ACCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT < 41bp 1 0.0963724171603498 1 0.130265116691589 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333440 chr1:22333420 nonsynonymous SNV 0.285 1 1 hm5C_associated_SNPs_39369 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 50bp
chr1 22333420 22333420 1 + G A UCEC 22333440 + 22333420 22333460 41 GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT ACCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT < 41bp 1 0.0963724171603498 1 0.130265116691589 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333440 chr1:22333420 nonsynonymous SNV 0.285 1 1 hm5C_associated_SNPs_39369 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 88bp
chr19 1083024 1083024 1 + G T UCEC 1083027 + 1083007 1083047 41 CGGGACCTGCCGCCTGAGAACCGGGCCTCGCTGCAGTACCT CGGGACCTGCCGCCTGATAACCGGGCCTCGCTGCAGTACCT < 41bp 1 0.648588089297953 1 0.802616357803345 experiment 0.702823821404095 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1083027 chr19:1083024 nonsynonymous SNV 0.068 0 18 hm5C_associated_SNPs_39370 0 0 0 0 1 ARHGAP45 chr19:1083065 5'GT 1083065 Upstream 42bp
chr17 57644051 57644051 1 + G T UCEC 57644036 + 57644016 57644056 41 AGGAACTACTCCAACTTTTCCTATTCAGAAACAAAGAAAAA AGGAACTACTCCAACTTTTCCTATTCAGAAACAAATAAAAA < 41bp 1 0.089757825094531 1 0.0869445502758026 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX40 ENSG00000108406 CDS Human protein_coding chr17:57644036 chr17:57644051 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_39371 0 0 1 0 2 DHX40 chr17:57643988 3'AG 57643988 Downstream 64bp
chr17 57644051 57644051 1 + G T UCEC 57644036 + 57644016 57644056 41 AGGAACTACTCCAACTTTTCCTATTCAGAAACAAAGAAAAA AGGAACTACTCCAACTTTTCCTATTCAGAAACAAATAAAAA < 41bp 1 0.089757825094531 1 0.0869445502758026 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX40 ENSG00000108406 CDS Human protein_coding chr17:57644036 chr17:57644051 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_39371 0 0 1 0 2 DHX40 chr17:57644070 5'GT 57644070 Upstream 20bp
chr17 19237324 19237324 1 + G A UCEC 19237313 + 19237293 19237333 41 TTAACCCTTTCCAGGTGAACCAGCCCCAGCCGCTGACACTG TTAACCCTTTCCAGGTGAACCAGCCCCAGCCACTGACACTG < 41bp 1 0.511077916672685 1 0.365973562002182 experiment 0.97784416665463 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EPN2 ENSG00000072134 CDS Human protein_coding chr17:19237313 chr17:19237324 synonymous SNV . 0 32 hm5C_associated_SNPs_39373 0 0 1 0 1 EPN2 chr17:19237269 3'AG 19237269 Downstream 56bp
chr14 21556231 21556231 1 + C T UCEC 21556227 + 21556207 21556247 41 AGCAGCACTCCCACCCTGGCCAGTCGAGGGATCTTAGGGCT AGCAGCACTCCCACCCTGGCCAGTTGAGGGATCTTAGGGCT < 41bp 1 0.304015851868053 1 0.130868226289749 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21556227 chr14:21556231 stopgain 1.000 0 25 hm5C_associated_SNPs_39375 0 0 1 0 1 ARHGEF40 chr14:21556257 5'GT 21556257 Upstream 27bp
chrX 154005109 154005109 1 + G T UCEC 154005114 + 154005094 154005134 41 GAAGAAGAAGAAGAAGAAAGCAAAAGAGGTAGAATTGGTTT GAAGAAGAAGAAGAATAAAGCAAAAGAGGTAGAATTGGTTT < 41bp 1 0.722109522070525 1 0.610276341438293 experiment 0.555780955858951 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DKC1 ENSG00000130826 CDS Human protein_coding chrX:154005114 chrX:154005109 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_39376 0 0 1 0 1 DKC1 chrX:154005074 3'AG 154005074 Downstream 36bp
chr20 37632415 37632415 1 + G A UCEC 37632421 + 37632401 37632441 41 GAAACTGTTGTGTCGATGCTCATCGAGCAGGCTCGAGCACT GAAACTGTTGTGTCAATGCTCATCGAGCAGGCTCGAGCACT < 41bp 1 0.352523156754734 1 0.064522922039032 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX35 ENSG00000101452 CDS Human protein_coding chr20:37632421 chr20:37632415 synonymous SNV . 0 15 hm5C_associated_SNPs_39377 0 0 1 0 1 DHX35 chr20:37632392 3'AG 37632392 Downstream 24bp
chr17 7814218 7814218 1 + C T UCEC 7814203 + 7814183 7814223 41 TACGCTACACCTCCGGGGTACGGGGCGGCCTTCAGCGCCGC TACGCTACACCTCCGGGGTACGGGGCGGCCTTCAGTGCCGC < 41bp 1 0.774556147435538 1 0.792243421077728 experiment 0.450887705128925 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7814203 chr17:7814218 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_39378 0 0 1 0 2 CHD3 chr17:7814165 3'AG 7814165 Downstream 54bp
chr17 7814218 7814218 1 + C T UCEC 7814203 + 7814183 7814223 41 TACGCTACACCTCCGGGGTACGGGGCGGCCTTCAGCGCCGC TACGCTACACCTCCGGGGTACGGGGCGGCCTTCAGTGCCGC < 41bp 1 0.774556147435538 1 0.792243421077728 experiment 0.450887705128925 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7814203 chr17:7814218 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_39378 0 0 1 0 2 CHD3 chr17:7814291 5'GT 7814291 Upstream 74bp
chr6 33646248 33646248 1 + G A UCEC 33646267 + 33646247 33646287 41 AGAAGTTCTGTGCAGGGAACCCCGGCAACCAGGCCCTGCTG AAAAGTTCTGTGCAGGGAACCCCGGCAACCAGGCCCTGCTG < 41bp 1 0.281974497716561 1 0.201484471559525 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33646267 chr6:33646248 synonymous SNV . 0 2 hm5C_associated_SNPs_39380 0 0 0 0 1 ITPR3 chr6:33646320 5'GT 33646320 Upstream 73bp
chr15 25220518 25220518 1 + G A UCEC 25220529 + 25220509 25220549 41 TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGA TTGGCAAGAATAGCAAGATGCTGCAGCACATTGACTATAGA < 41bp 1 0.581020943009675 1 0.490265488624573 experiment 0.83795811398065 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25220529 chr15:25220518 nonsynonymous SNV 0.997 1 10 hm5C_associated_SNPs_39382 0 0 1 2 1 SNRPN chr15:25220505 3'AG 25220505 Downstream 14bp
chr8 21844759 21844759 1 + T C UCEC 21844767 + 21844747 21844787 41 GTAAGATCTACATTGGGGACCAAGTGCAGAAATCCTCTAAG GTAAGATCTACACTGGGGACCAAGTGCAGAAATCCTCTAAG < 41bp 1 0.347233274098431 1 0.639444231987 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21844767 chr8:21844759 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_39383 0 0 1 0 1 XPO7 chr8:21844787 5'GT 21844787 Upstream 29bp
chr1 162470024 162470024 1 + A C UCEC 162470019 + 162469999 162470039 41 CTCATTGACTTTGGACTTAGCTTCAAAGAAGGCAATCAGGT CTCATTGACTTTGGACTTAGCTTCACAGAAGGCAATCAGGT < 41bp 1 0.350634575281144 1 0.0740765929222107 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162470019 chr1:162470024 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_39384 0 0 1 0 1 UHMK1 chr1:162470037 5'GT 162470037 Upstream 14bp
chr1 145517308 145517308 1 + C T UCEC 145517304 + 145517284 145517324 41 ATGCTTGCTCTCTTCTTGGCCATGCGCTGCAGAGGCATGGA ATGCTTGCTCTCTTCTTGGCCATGTGCTGCAGAGGCATGGA < 41bp 1 0.133431278706047 1 0.172211319208145 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PEX11B ENSG00000131779 CDS Human protein_coding chr1:145517304 chr1:145517308 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_39385 0 0 1 0 2 PEX11B chr1:145517273 3'AG 145517273 Downstream 36bp
chr1 145517308 145517308 1 + C T UCEC 145517304 + 145517284 145517324 41 ATGCTTGCTCTCTTCTTGGCCATGCGCTGCAGAGGCATGGA ATGCTTGCTCTCTTCTTGGCCATGTGCTGCAGAGGCATGGA < 41bp 1 0.133431278706047 1 0.172211319208145 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PEX11B ENSG00000131779 CDS Human protein_coding chr1:145517304 chr1:145517308 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_39385 0 0 1 0 2 PEX11B chr1:145517283 3'AG 145517283 Downstream 26bp
chr5 10411479 10411479 1 + G T UCEC 10411473 + 10411453 10411493 41 ATTCTTATTTATTGGGAGACCAGGAAGAAAATGAAAACAGT ATTCTTATTTATTGGGAGACCAGGAATAAAATGAAAACAGT < 41bp 1 0.636578174341648 1 0.626469254493713 experiment 0.726843651316703 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10411473 chr5:10411479 stopgain 1.000 1 27 hm5C_associated_SNPs_39387 0 0 1 0 1 MARCH6 chr5:10411445 3'AG 10411445 Downstream 35bp
chr17 65735679 65735679 1 + T C UCEC 65735673 + 65735653 65735693 41 TTCCTGTACCTGAAGTGTAGCGAAAATGCTACTATGACTCT TTCCTGTACCTGAAGTGTAGCGAAAACGCTACTATGACTCT < 41bp 1 0.588339621730198 1 0.741016983985901 experiment 0.823320756539604 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65735673 chr17:65735679 synonymous SNV . 0 27 hm5C_associated_SNPs_39389 0 0 0 0 2 NOL11 chr17:65735632 3'AG 65735632 Downstream 48bp
chr17 65735679 65735679 1 + T C UCEC 65735673 + 65735653 65735693 41 TTCCTGTACCTGAAGTGTAGCGAAAATGCTACTATGACTCT TTCCTGTACCTGAAGTGTAGCGAAAACGCTACTATGACTCT < 41bp 1 0.588339621730198 1 0.741016983985901 experiment 0.823320756539604 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65735673 chr17:65735679 synonymous SNV . 0 27 hm5C_associated_SNPs_39389 0 0 0 0 2 NOL11 chr17:65735724 5'GT 65735724 Upstream 46bp
chr7 930591 930591 1 + C A UCEC 930607 + 930587 930627 41 GTATCATTTTCTGCACTCAGCGGACGGGGAGGGCTGTGCCA GTATAATTTTCTGCACTCAGCGGACGGGGAGGGCTGTGCCA < 41bp 1 0.487632257530374 1 0.784032225608826 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GET4 ENSG00000239857 CDS Human protein_coding chr7:930607 chr7:930591 nonsynonymous SNV 0.850 4 5 hm5C_associated_SNPs_39391 0 0 1 0 1 GET4 chr7:930565 3'AG 930565 Downstream 27bp
chr18 60642764 60642764 1 + G A UCEC 60642776 + 60642756 60642796 41 TCTCTGTCGAAATGGAAAGCCGCTGCCTCTGTCCAGATCTT TCTCTGTCAAAATGGAAAGCCGCTGCCTCTGTCCAGATCTT < 41bp 1 0.0882436556559662 1 0.197077125310898 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PHLPP1 ENSG00000081913 CDS Human protein_coding chr18:60642776 chr18:60642764 nonsynonymous SNV 0.994 2 9 hm5C_associated_SNPs_39392 0 0 0 0 1 PHLPP1 chr18:60642858 5'GT 60642858 Upstream 95bp
chr20 44526721 44526721 1 + C A UCEC 44526703 + 44526683 44526723 41 GACAGCGGGGAGCAGATTGCCGGCTTCGTGAAGGAGTTCTC GACAGCGGGGAGCAGATTGCCGGCTTCGTGAAGGAGTTATC < 41bp 1 0.629660855918504 1 0.50862729549408 experiment 0.740678288162991 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44526703 chr20:44526721 nonsynonymous SNV 0.899 3 39 hm5C_associated_SNPs_39393 0 0 1 2 2 CTSA chr20:44526644 3'AG 44526644 Downstream 78bp
chr20 44526721 44526721 1 + C A UCEC 44526703 + 44526683 44526723 41 GACAGCGGGGAGCAGATTGCCGGCTTCGTGAAGGAGTTCTC GACAGCGGGGAGCAGATTGCCGGCTTCGTGAAGGAGTTATC < 41bp 1 0.629660855918504 1 0.50862729549408 experiment 0.740678288162991 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44526703 chr20:44526721 nonsynonymous SNV 0.899 3 39 hm5C_associated_SNPs_39393 0 0 1 2 2 CTSA chr20:44526748 5'GT 44526748 Upstream 28bp
chr16 23700836 23700836 1 + C T UCEC 23700824 + 23700804 23700844 41 TTTTCATCCAGATCACCCTCCTTAAATATTTCCGCAATTAC TTTTCATCCAGATCACCCTCCTTAAATATTTCTGCAATTAC < 41bp 1 0.109203067149855 1 0.132362365722656 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700824 chr16:23700836 nonsynonymous SNV 0.998 3 33 hm5C_associated_SNPs_39394 0 0 1 0 1 PLK1 chr16:23700815 3'AG 23700815 Downstream 22bp
chr11 9451364 9451364 1 + G T UCEC 9451359 + 9451339 9451379 41 TGAAGAAGTTACTCCTATTGCAGTAGAAATGACACAACATT TGAAGAAGTTACTCCTATTGCAGTATAAATGACACAACATT < 41bp 1 0.524072171826421 1 0.42984065413475 experiment 0.951855656347158 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9451359 chr11:9451364 stopgain 1.000 1 26 hm5C_associated_SNPs_39400 0 0 0 0 1 IPO7 chr11:9451381 5'GT 9451381 Upstream 18bp
chr1 79128405 79128405 1 + G T UCEC 79128401 + 79128381 79128421 41 TATTGCAGCTAGAGGAAGTCCAAAGAAAACTTGGATTTGCT TATTGCAGCTAGAGGAAGTCCAAATAAAACTTGGATTTGCT < 41bp 1 0.192330415904517 1 0.275483757257462 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IFI44 ENSG00000137965 CDS Human protein_coding chr1:79128401 chr1:79128405 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_39401 0 0 0 0 1 IFI44 chr1:79128389 3'AG 79128389 Downstream 17bp
chrX 123229233 123229233 1 + G T UCEC 123229250 + 123229230 123229270 41 AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT AAATAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT < 41bp 1 0.475693464605398 1 0.543383181095123 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123229250 chrX:123229233 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_39402 0 0 1 0 2 STAG2 chrX:123229222 3'AG 123229222 Downstream 12bp
chrX 123229233 123229233 1 + G T UCEC 123229250 + 123229230 123229270 41 AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT AAATAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT < 41bp 1 0.475693464605398 1 0.543383181095123 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123229250 chrX:123229233 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_39402 0 0 1 0 2 STAG2 chrX:123229299 5'GT 123229299 Upstream 67bp
chrX 71401658 71401658 1 + G A UCEC 71401639 + 71401619 71401659 41 AACAACAAGCTTCCAAGATGCCGCCCAAAGGAAAAAGTGGT AACAACAAGCTTCCAAGATGCCGCCCAAAGGAAAAAGTGAT < 41bp 1 0.139319802208412 1 0.280143409967422 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PIN4 ENSG00000102309 CDS Human protein_coding chrX:71401639 chrX:71401658 nonsynonymous SNV 0.997 2 40 hm5C_associated_SNPs_39403 0 0 1 0 1 PIN4 chrX:71401678 5'GT 71401678 Upstream 21bp
chr12 104720179 104720179 1 + G A UCEC 104720169 + 104720149 104720189 41 GCTTGCACAAGAAAAATTGGCTTAGAAACCGTAGGGGTGAA GCTTGCACAAGAAAAATTGGCTTAGAAACCATAGGGGTGAA < 41bp 1 0.224297347592138 1 0.0507263839244843 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TXNRD1 ENSG00000198431 CDS Human protein_coding chr12:104720169 chr12:104720179 nonsynonymous SNV 0.901 0 31 hm5C_associated_SNPs_39404 0 0 1 0 2 TXNRD1 chr12:104720125 3'AG 104720125 Downstream 55bp
chr12 104720179 104720179 1 + G A UCEC 104720169 + 104720149 104720189 41 GCTTGCACAAGAAAAATTGGCTTAGAAACCGTAGGGGTGAA GCTTGCACAAGAAAAATTGGCTTAGAAACCATAGGGGTGAA < 41bp 1 0.224297347592138 1 0.0507263839244843 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TXNRD1 ENSG00000198431 CDS Human protein_coding chr12:104720169 chr12:104720179 nonsynonymous SNV 0.901 0 31 hm5C_associated_SNPs_39404 0 0 1 0 2 TXNRD1 chr12:104720201 5'GT 104720201 Upstream 23bp
chr1 180034367 180034367 1 + A G UCEC 180034360 + 180034340 180034380 41 ATCTCCAGCAGTGAAACTAGCAGCATTATGCAGAAACTGAA ATCTCCAGCAGTGAAACTAGCAGCATTGTGCAGAAACTGAA < 41bp 1 0.601351176007477 1 0.244284898042679 experiment 0.797297647985045 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180034360 chr1:180034367 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_39405 0 0 1 0 1 CEP350 chr1:180034407 5'GT 180034407 Upstream 41bp
chr2 233656045 233656045 1 + G C UCEC 233656051 + 233656031 233656071 41 ATCAGTCTCAGGAAGCATCACAGTTTGAGAGGAAAGATGAA ATCAGTCTCAGGAACCATCACAGTTTGAGAGGAAAGATGAA < 41bp 1 0.154402517330756 1 0.619334757328033 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233656051 chr2:233656045 nonsynonymous SNV 0.940 0 15 hm5C_associated_SNPs_39407 0 0 1 0 2 GIGYF2 chr2:233655968 3'AG 233655968 Downstream 78bp
chr2 233656045 233656045 1 + G C UCEC 233656051 + 233656031 233656071 41 ATCAGTCTCAGGAAGCATCACAGTTTGAGAGGAAAGATGAA ATCAGTCTCAGGAACCATCACAGTTTGAGAGGAAAGATGAA < 41bp 1 0.154402517330756 1 0.619334757328033 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233656051 chr2:233656045 nonsynonymous SNV 0.940 0 15 hm5C_associated_SNPs_39407 0 0 1 0 2 GIGYF2 chr2:233655971 3'AG 233655971 Downstream 75bp
chr12 69128518 69128518 1 + A G UCEC 69128531 + 69128511 69128551 41 GTGGTTTAAGCATATGAATTCAGTTCCACAAAAACCTGCTT GTGGTTTGAGCATATGAATTCAGTTCCACAAAAACCTGCTT < 41bp 1 0.205794492230461 1 0.392956793308258 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69128531 chr12:69128518 nonsynonymous SNV 0.999 1 8 hm5C_associated_SNPs_39408 0 0 1 0 2 NUP107 chr12:69128488 3'AG 69128488 Downstream 31bp
chr12 69128518 69128518 1 + A G UCEC 69128531 + 69128511 69128551 41 GTGGTTTAAGCATATGAATTCAGTTCCACAAAAACCTGCTT GTGGTTTGAGCATATGAATTCAGTTCCACAAAAACCTGCTT < 41bp 1 0.205794492230461 1 0.392956793308258 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69128531 chr12:69128518 nonsynonymous SNV 0.999 1 8 hm5C_associated_SNPs_39408 0 0 1 0 2 NUP107 chr12:69128613 5'GT 69128613 Upstream 96bp
chr19 1055305 1055305 1 + T C UCEC 1055304 + 1055284 1055324 41 AGAACCTGACAGGCCGGAACCTGTCTGACTTCCTGGTCAAG AGAACCTGACAGGCCGGAACCCGTCTGACTTCCTGGTCAAG < 41bp 1 0.0467265799131949 1 0.0526978075504303 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1055304 chr19:1055305 nonsynonymous SNV 0.495 3 22 hm5C_associated_SNPs_39410 0 0 1 0 1 ABCA7 chr19:1055350 5'GT 1055350 Upstream 46bp
chr19 19308390 19308390 1 + C G UCEC 19308370 + 19308350 19308390 41 CCAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGC CCAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGG < 41bp 1 0.349630605998159 1 0.0867907106876373 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308370 chr19:19308390 nonsynonymous SNV 0.050 3 41 hm5C_associated_SNPs_39413 0 0 1 0 2 RFXANK chr19:19308330 3'AG 19308330 Downstream 61bp
chr19 19308390 19308390 1 + C G UCEC 19308370 + 19308350 19308390 41 CCAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGC CCAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGG < 41bp 1 0.349630605998159 1 0.0867907106876373 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308370 chr19:19308390 nonsynonymous SNV 0.050 3 41 hm5C_associated_SNPs_39413 0 0 1 0 2 RFXANK chr19:19308430 5'GT 19308430 Upstream 41bp
chr19 19308390 19308390 1 + C G UCEC 19308371 + 19308351 19308391 41 CAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGCC CAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGGC < 41bp 1 0.307401339105068 1 0.107650250196457 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308371 chr19:19308390 nonsynonymous SNV 0.050 3 40 hm5C_associated_SNPs_39414 0 0 1 0 2 RFXANK chr19:19308330 3'AG 19308330 Downstream 61bp
chr19 19308390 19308390 1 + C G UCEC 19308371 + 19308351 19308391 41 CAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGCC CAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGGC < 41bp 1 0.307401339105068 1 0.107650250196457 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308371 chr19:19308390 nonsynonymous SNV 0.050 3 40 hm5C_associated_SNPs_39414 0 0 1 0 2 RFXANK chr19:19308430 5'GT 19308430 Upstream 41bp
chr16 30723164 30723164 1 + G A UCEC 30723169 + 30723149 30723189 41 CCTTTAGACTCTGTGGAGGACCGGAGTGAGGATGAGGAAGA CCTTTAGACTCTGTGAAGGACCGGAGTGAGGATGAGGAAGA < 41bp 1 0.450927977746993 1 0.325367152690887 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30723169 chr16:30723164 nonsynonymous SNV 0.882 2 16 hm5C_associated_SNPs_39415 0 0 1 0 1 SRCAP chr16:30723156 3'AG 30723156 Downstream 9bp
chr2 217311879 217311879 1 + C T UCEC 217311863 + 217311843 217311883 41 TTTCATGCCTTTGGACTTCGCTACTGTGATGCCAAACGGGT TTTCATGCCTTTGGACTTCGCTACTGTGATGCCAAATGGGT < 41bp 1 0.385623462371953 1 0.0658039152622223 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311863 chr2:217311879 nonsynonymous SNV 0.977 2 37 hm5C_associated_SNPs_39416 0 0 0 0 1 SMARCAL1 chr2:217311881 5'GT 217311881 Upstream 3bp
chr2 217311879 217311879 1 + C T UCEC 217311866 + 217311846 217311886 41 CATGCCTTTGGACTTCGCTACTGTGATGCCAAACGGGTATG CATGCCTTTGGACTTCGCTACTGTGATGCCAAATGGGTATG < 41bp 1 0.361331416576005 1 0.0823123157024384 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311866 chr2:217311879 nonsynonymous SNV 0.977 2 34 hm5C_associated_SNPs_39417 0 0 0 0 1 SMARCAL1 chr2:217311881 5'GT 217311881 Upstream 3bp
chr11 68204391 68204391 1 + C T UCEC 68204395 + 68204375 68204415 41 AGTTCCGGTGTGCGAGCGGCCAGTGTGTCCTCATCAAACAG AGTTCCGGTGTGCGAGTGGCCAGTGTGTCCTCATCAAACAG < 41bp 1 0.455475175077947 1 0.520419120788574 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204395 chr11:68204391 synonymous SNV . 0 17 hm5C_associated_SNPs_39418 0 0 0 0 2 LRP5 chr11:68204357 3'AG 68204357 Downstream 35bp
chr11 68204391 68204391 1 + C T UCEC 68204395 + 68204375 68204415 41 AGTTCCGGTGTGCGAGCGGCCAGTGTGTCCTCATCAAACAG AGTTCCGGTGTGCGAGTGGCCAGTGTGTCCTCATCAAACAG < 41bp 1 0.455475175077947 1 0.520419120788574 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204395 chr11:68204391 synonymous SNV . 0 17 hm5C_associated_SNPs_39418 0 0 0 0 2 LRP5 chr11:68204467 5'GT 68204467 Upstream 77bp
chr4 159627843 159627843 1 + G A UCEC 159627823 + 159627803 159627843 41 GCCAGCCAAGGATTGCACACCTATTGAGTATCCAAAACCCG GCCAGCCAAGGATTGCACACCTATTGAGTATCCAAAACCCA < 41bp 1 0.142237487591441 1 0.11455512046814 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ETFDH ENSG00000171503 CDS Human protein_coding chr4:159627823 chr4:159627843 nonsynonymous SNV 0.873 5 41 hm5C_associated_SNPs_39422 2 0 0 0 1 ETFDH chr4:159627781 3'AG 159627781 Downstream 63bp
chr16 81053827 81053827 1 + G A UCEC 81053845 + 81053825 81053865 41 CCGTACGCCTTCACGTCCTCCTCCATGCTGAGGCGCAATAC CCATACGCCTTCACGTCCTCCTCCATGCTGAGGCGCAATAC < 41bp 1 0.785586955960676 1 0.900131344795227 experiment 0.428826088078649 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CENPN ENSG00000166451 CDS Human protein_coding chr16:81053845 chr16:81053827 synonymous SNV . 0 3 hm5C_associated_SNPs_39423 0 0 1 0 1 CENPN chr16:81053881 5'GT 81053881 Upstream 55bp
chr11 65338937 65338937 1 + C G UCEC 65338926 + 65338906 65338946 41 CTGGCCTCAGCCTCAGAGCTCCCCCTGGGCTCTCGACCTGC CTGGCCTCAGCCTCAGAGCTCCCCCTGGGCTGTCGACCTGC < 41bp 1 0.303020299554264 1 0.0168825387954712 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SSSCA1 ENSG00000173465 CDS Human protein_coding chr11:65338926 chr11:65338937 nonsynonymous SNV 0.072 1 32 hm5C_associated_SNPs_39424 0 0 0 0 1 SSSCA1 chr11:65338862 3'AG 65338862 Downstream 76bp
chr16 1394285 1394285 1 + G A UCEC 1394270 + 1394250 1394290 41 TTCCAACCCTCCTTTGAGATCTGCCCCTTCGAGTCGGAGCT TTCCAACCCTCCTTTGAGATCTGCCCCTTCGAGTCAGAGCT < 41bp 1 0.168076941646837 1 0.279393970966339 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1394270 chr16:1394285 synonymous SNV . 0 36 hm5C_associated_SNPs_39425 0 0 0 0 2 BAIAP3 chr16:1394228 3'AG 1394228 Downstream 58bp
chr16 1394285 1394285 1 + G A UCEC 1394270 + 1394250 1394290 41 TTCCAACCCTCCTTTGAGATCTGCCCCTTCGAGTCGGAGCT TTCCAACCCTCCTTTGAGATCTGCCCCTTCGAGTCAGAGCT < 41bp 1 0.168076941646837 1 0.279393970966339 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1394270 chr16:1394285 synonymous SNV . 0 36 hm5C_associated_SNPs_39425 0 0 0 0 2 BAIAP3 chr16:1394318 5'GT 1394318 Upstream 34bp
chr14 64909120 64909120 1 + G A UCEC 64909115 + 64909095 64909135 41 TCAAGATGCACGGGGGCGGCCCCACGGTGAGTGGTGGGTTG TCAAGATGCACGGGGGCGGCCCCACAGTGAGTGGTGGGTTG < 41bp 1 0.187474700656197 1 0.329483270645142 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64909115 chr14:64909120 synonymous SNV . 0 26 hm5C_associated_SNPs_39428 0 0 1 0 1 MTHFD1 chr14:64909120 5'GT 64909120 Upstream 1bp
chr19 14562725 14562725 1 + G A UCEC 14562705 + 14562685 14562725 41 ACCATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGG ACCATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGA < 41bp 1 0.135110239074447 1 0.080378919839859 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562705 chr19:14562725 nonsynonymous SNV 0.437 2 41 hm5C_associated_SNPs_39429 0 0 1 0 1 PKN1 chr19:14562641 3'AG 14562641 Downstream 85bp
chr19 14562725 14562725 1 + G A UCEC 14562706 + 14562686 14562726 41 CCATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGGG CCATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGAG < 41bp 1 0.0551300527191485 1 0.280269473791122 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562706 chr19:14562725 nonsynonymous SNV 0.437 2 40 hm5C_associated_SNPs_39430 0 0 1 0 1 PKN1 chr19:14562641 3'AG 14562641 Downstream 85bp
chr19 14562725 14562725 1 + G A UCEC 14562708 + 14562688 14562728 41 ATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGGGAC ATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGAGAC < 41bp 1 0.681484825061827 1 0.938106596469879 experiment 0.637030349876347 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562708 chr19:14562725 nonsynonymous SNV 0.437 2 38 hm5C_associated_SNPs_39431 0 0 1 0 1 PKN1 chr19:14562641 3'AG 14562641 Downstream 85bp
chr6 43417262 43417262 1 + A T UCEC 43417260 + 43417240 43417280 41 TGCCAACAAGACAGTGCTGACCATTGCCCATAGGTATGTAA TGCCAACAAGACAGTGCTGACCTTTGCCCATAGGTATGTAA < 41bp 1 0.0192336986339172 1 0.0377053320407867 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43417260 chr6:43417262 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_39432 0 0 1 0 1 ABCC10 chr6:43417272 5'GT 43417272 Upstream 11bp
chr2 32897376 32897376 1 + T C UCEC 32897396 + 32897376 32897416 41 TAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCGGATCTG CAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCGGATCTG < 41bp 1 0.187079139673399 1 0.213230609893799 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32897396 chr2:32897376 nonsynonymous SNV 0.999 4 1 hm5C_associated_SNPs_39433 0 0 1 0 2 TTC27 chr2:32897339 3'AG 32897339 Downstream 38bp
chr2 32897376 32897376 1 + T C UCEC 32897396 + 32897376 32897416 41 TAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCGGATCTG CAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCGGATCTG < 41bp 1 0.187079139673399 1 0.213230609893799 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32897396 chr2:32897376 nonsynonymous SNV 0.999 4 1 hm5C_associated_SNPs_39433 0 0 1 0 2 TTC27 chr2:32897451 5'GT 32897451 Upstream 76bp
chr12 69082803 69082803 1 + C T UCEC 69082818 + 69082798 69082838 41 CTGCACGGAAACAGAGTGCTCAGAAAAGAGTTTTACGTATC CTGCATGGAAACAGAGTGCTCAGAAAAGAGTTTTACGTATC < 41bp 1 0.739784365077286 1 0.625642478466034 experiment 0.520431269845428 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69082818 chr12:69082803 nonsynonymous SNV 0.995 1 6 hm5C_associated_SNPs_39435 0 0 1 0 2 NUP107 chr12:69082742 3'AG 69082742 Downstream 62bp
chr12 69082803 69082803 1 + C T UCEC 69082818 + 69082798 69082838 41 CTGCACGGAAACAGAGTGCTCAGAAAAGAGTTTTACGTATC CTGCATGGAAACAGAGTGCTCAGAAAAGAGTTTTACGTATC < 41bp 1 0.739784365077286 1 0.625642478466034 experiment 0.520431269845428 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69082818 chr12:69082803 nonsynonymous SNV 0.995 1 6 hm5C_associated_SNPs_39435 0 0 1 0 2 NUP107 chr12:69082833 5'GT 69082833 Upstream 31bp
chr19 36216690 36216690 1 + A G UCEC 36216704 + 36216684 36216724 41 TATCCAACCCGGGCCACGCGCAAACGGCGCCACTGGGTGAG TATCCAGCCCGGGCCACGCGCAAACGGCGCCACTGGGTGAG < 41bp 1 0.162901715575548 1 0.248447805643082 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216704 chr19:36216690 nonsynonymous SNV 0.999 5 7 hm5C_associated_SNPs_39436 0 0 1 0 2 KMT2B chr19:36216624 3'AG 36216624 Downstream 67bp
chr19 36216690 36216690 1 + A G UCEC 36216704 + 36216684 36216724 41 TATCCAACCCGGGCCACGCGCAAACGGCGCCACTGGGTGAG TATCCAGCCCGGGCCACGCGCAAACGGCGCCACTGGGTGAG < 41bp 1 0.162901715575548 1 0.248447805643082 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216704 chr19:36216690 nonsynonymous SNV 0.999 5 7 hm5C_associated_SNPs_39436 0 0 1 0 2 KMT2B chr19:36216719 5'GT 36216719 Upstream 30bp
chr6 36884249 36884249 1 + T A UCEC 36884229 + 36884209 36884249 41 ATACTTCTACAGGAGGAGACCTCTGAACAGATCACAAATGT ATACTTCTACAGGAGGAGACCTCTGAACAGATCACAAATGA < 41bp 1 0.215775970936069 1 0.446123540401459 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C6orf89 ENSG00000198663 CDS Human protein_coding chr6:36884229 chr6:36884249 nonsynonymous SNV 0.348 4 41 hm5C_associated_SNPs_39437 0 0 1 0 1 C6orf89 chr6:36884221 3'AG 36884221 Downstream 29bp
chr10 104129687 104129687 1 + G A UCEC 104129695 + 104129675 104129715 41 GTCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCA GTCTAGTGTTCGAGGCCCATCCACTGAAAACCAAGAGGCCA < 41bp 1 0.15558142555161 1 0.432581961154938 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129695 chr10:104129687 synonymous SNV . 0 13 hm5C_associated_SNPs_39438 0 0 1 0 2 GBF1 chr10:104129618 3'AG 104129618 Downstream 70bp
chr10 104129687 104129687 1 + G A UCEC 104129695 + 104129675 104129715 41 GTCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCA GTCTAGTGTTCGAGGCCCATCCACTGAAAACCAAGAGGCCA < 41bp 1 0.15558142555161 1 0.432581961154938 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129695 chr10:104129687 synonymous SNV . 0 13 hm5C_associated_SNPs_39438 0 0 1 0 2 GBF1 chr10:104129741 5'GT 104129741 Upstream 55bp
chr10 104129687 104129687 1 + G A UCEC 104129696 + 104129676 104129716 41 TCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCAA TCTAGTGTTCGAGGCCCATCCACTGAAAACCAAGAGGCCAA < 41bp 1 0.458632443641747 1 0.65564352273941 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129696 chr10:104129687 synonymous SNV . 0 12 hm5C_associated_SNPs_39439 0 0 1 0 2 GBF1 chr10:104129618 3'AG 104129618 Downstream 70bp
chr10 104129687 104129687 1 + G A UCEC 104129696 + 104129676 104129716 41 TCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCAA TCTAGTGTTCGAGGCCCATCCACTGAAAACCAAGAGGCCAA < 41bp 1 0.458632443641747 1 0.65564352273941 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129696 chr10:104129687 synonymous SNV . 0 12 hm5C_associated_SNPs_39439 0 0 1 0 2 GBF1 chr10:104129741 5'GT 104129741 Upstream 55bp
chr19 3574393 3574393 1 + C T UCEC 3574378 + 3574358 3574398 41 AACGACGCAGCCCGGTTCTGCAGCCGGTGAAGAAACGCGGC AACGACGCAGCCCGGTTCTGCAGCCGGTGAAGAAATGCGGC < 41bp 1 0.520735260683765 1 0.619297325611115 experiment 0.958529478632471 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HMG20B ENSG00000064961 CDS Human protein_coding chr19:3574378 chr19:3574393 nonsynonymous SNV 0.995 2 36 hm5C_associated_SNPs_39440 0 0 1 0 1 HMG20B chr19:3574381 3'AG 3574381 Downstream 13bp
chr11 610285 610285 1 + G A UCEC 610293 + 610273 610313 41 CAGGTGTTCTCCGAGCTGCCCTTTCCCAGTCACGTGCTTCC CAGGTGTTCTCCAAGCTGCCCTTTCCCAGTCACGTGCTTCC < 41bp 1 0.0193835777486536 1 0.0175833106040955 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:610293 chr11:610285 nonsynonymous SNV 0.007 2 13 hm5C_associated_SNPs_39441 0 0 1 0 2 PHRF1 chr11:610196 3'AG 610196 Downstream 90bp
chr11 610285 610285 1 + G A UCEC 610293 + 610273 610313 41 CAGGTGTTCTCCGAGCTGCCCTTTCCCAGTCACGTGCTTCC CAGGTGTTCTCCAAGCTGCCCTTTCCCAGTCACGTGCTTCC < 41bp 1 0.0193835777486536 1 0.0175833106040955 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:610293 chr11:610285 nonsynonymous SNV 0.007 2 13 hm5C_associated_SNPs_39441 0 0 1 0 2 PHRF1 chr11:610347 5'GT 610347 Upstream 63bp
chr20 57289643 57289643 1 + G A UCEC 57289631 + 57289611 57289651 41 CCTAGGACCGAGACAACAGCCCCAGCTCCTGTGCTGGCCTC CCTAGGACCGAGACAACAGCCCCAGCTCCTGTACTGGCCTC < 41bp 1 0.413639356887233 1 0.46846216917038 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57289631 chr20:57289643 nonsynonymous SNV 0.994 4 33 hm5C_associated_SNPs_39442 0 0 1 0 2 NPEPL1 chr20:57289616 3'AG 57289616 Downstream 28bp
chr20 57289643 57289643 1 + G A UCEC 57289631 + 57289611 57289651 41 CCTAGGACCGAGACAACAGCCCCAGCTCCTGTGCTGGCCTC CCTAGGACCGAGACAACAGCCCCAGCTCCTGTACTGGCCTC < 41bp 1 0.413639356887233 1 0.46846216917038 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57289631 chr20:57289643 nonsynonymous SNV 0.994 4 33 hm5C_associated_SNPs_39442 0 0 1 0 2 NPEPL1 chr20:57289726 5'GT 57289726 Upstream 84bp
chr19 30499999 30499999 1 + G A UCEC 30500003 + 30499983 30500023 41 CAAATGTGAATGCGATGCATCAAGTAACAGACTCTCATACT CAAATGTGAATGCGATACATCAAGTAACAGACTCTCATACT < 41bp 1 0.579806845602908 1 0.195867419242859 experiment 0.840386308794185 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control URI1 ENSG00000105176 CDS Human protein_coding chr19:30500003 chr19:30499999 nonsynonymous SNV 0.002 0 17 hm5C_associated_SNPs_39444 0 0 1 0 1 URI1 chr19:30499912 3'AG 30499912 Downstream 88bp
chr16 4902950 4902950 1 + C A UCEC 4902930 + 4902910 4902950 41 TTGGTAGCCATGTCGGAGCCCCACAGGGTCCAGTTCACCTC TTGGTAGCCATGTCGGAGCCCCACAGGGTCCAGTTCACCTA < 41bp 1 0.350116393824678 1 0.190715283155441 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN1 ENSG00000118900 CDS Human protein_coding chr16:4902930 chr16:4902950 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_39445 0 0 1 0 1 UBN1 chr16:4902880 3'AG 4902880 Downstream 71bp
chr16 15788055 15788055 1 + C T UCEC 15788047 + 15788027 15788067 41 GACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCG GACGACTCCACCGGGGGGACCCCCCTCATACCTGCGGCCCG < 41bp 1 0.177923150091764 1 0.0667369663715363 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDE1 ENSG00000072864 CDS Human protein_coding chr16:15788047 chr16:15788055 nonsynonymous SNV 0.089 4 29 hm5C_associated_SNPs_39446 0 0 1 0 2 NDE1 chr16:15788022 3'AG 15788022 Downstream 34bp
chr16 15788055 15788055 1 + C T UCEC 15788047 + 15788027 15788067 41 GACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCG GACGACTCCACCGGGGGGACCCCCCTCATACCTGCGGCCCG < 41bp 1 0.177923150091764 1 0.0667369663715363 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDE1 ENSG00000072864 CDS Human protein_coding chr16:15788047 chr16:15788055 nonsynonymous SNV 0.089 4 29 hm5C_associated_SNPs_39446 0 0 1 0 2 NDE1 chr16:15788113 5'GT 15788113 Upstream 59bp
chr11 63743727 63743727 1 + G A UCEC 63743738 + 63743718 63743758 41 TCCTGCTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCT TCCTGCTTCATGACCTTCCTCCTGCCAGCGGGCTGGATCCT < 41bp 1 0.150314487025934 1 0.212983936071396 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control COX8A ENSG00000176340 CDS Human protein_coding chr11:63743738 chr11:63743727 nonsynonymous SNV 0.005 2 10 hm5C_associated_SNPs_39447 0 0 1 0 1 COX8A chr11:63743697 3'AG 63743697 Downstream 31bp
chr11 63743727 63743727 1 + G A UCEC 63743739 + 63743719 63743759 41 CCTGCTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCTG CCTGCTTCATGACCTTCCTCCTGCCAGCGGGCTGGATCCTG < 41bp 1 0.44402193590715 1 0.285111010074615 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COX8A ENSG00000176340 CDS Human protein_coding chr11:63743739 chr11:63743727 nonsynonymous SNV 0.005 2 9 hm5C_associated_SNPs_39448 0 0 1 0 1 COX8A chr11:63743697 3'AG 63743697 Downstream 31bp
chr14 100934379 100934379 1 + G A UCEC 100934368 + 100934348 100934388 41 TTGCCTGCAGGTATGGAACGCCGTGGACTCCGGGCACTGCC TTGCCTGCAGGTATGGAACGCCGTGGACTCCAGGCACTGCC < 41bp 1 0.215678925567494 1 0.629751086235046 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR25 ENSG00000176473 CDS Human protein_coding chr14:100934368 chr14:100934379 nonsynonymous SNV 0.099 3 32 hm5C_associated_SNPs_39449 0 0 0 0 1 WDR25 chr14:100934358 3'AG 100934358 Downstream 22bp
chr12 112235978 112235978 1 + C T UCEC 112235998 + 112235978 112236018 41 CGTGGTTACTTCATCCAGCCCACTGTGTTTGGAGATGTGCA TGTGGTTACTTCATCCAGCCCACTGTGTTTGGAGATGTGCA < 41bp 1 0.194681029565728 1 0.071449339389801 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALDH2 ENSG00000111275 CDS Human protein_coding chr12:112235998 chr12:112235978 nonsynonymous SNV 0.890 2 1 hm5C_associated_SNPs_39451 0 0 1 0 2 ALDH2 chr12:112235882 3'AG 112235882 Downstream 97bp
chr12 112235978 112235978 1 + C T UCEC 112235998 + 112235978 112236018 41 CGTGGTTACTTCATCCAGCCCACTGTGTTTGGAGATGTGCA TGTGGTTACTTCATCCAGCCCACTGTGTTTGGAGATGTGCA < 41bp 1 0.194681029565728 1 0.071449339389801 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALDH2 ENSG00000111275 CDS Human protein_coding chr12:112235998 chr12:112235978 nonsynonymous SNV 0.890 2 1 hm5C_associated_SNPs_39451 0 0 1 0 2 ALDH2 chr12:112236046 5'GT 112236046 Upstream 69bp
chr22 32270346 32270346 1 + C T UCEC 32270365 + 32270345 32270385 41 ACGTGGAGGGGATCCAGACACAGGCGATGGCCATTGACATC ATGTGGAGGGGATCCAGACACAGGCGATGGCCATTGACATC < 41bp 1 0.771046869822484 1 0.681865572929382 experiment 0.457906260355033 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32270365 chr22:32270346 synonymous SNV . 0 2 hm5C_associated_SNPs_39453 0 0 1 0 2 DEPDC5 chr22:32270259 3'AG 32270259 Downstream 88bp
chr22 32270346 32270346 1 + C T UCEC 32270365 + 32270345 32270385 41 ACGTGGAGGGGATCCAGACACAGGCGATGGCCATTGACATC ATGTGGAGGGGATCCAGACACAGGCGATGGCCATTGACATC < 41bp 1 0.771046869822484 1 0.681865572929382 experiment 0.457906260355033 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32270365 chr22:32270346 synonymous SNV . 0 2 hm5C_associated_SNPs_39453 0 0 1 0 2 DEPDC5 chr22:32270391 5'GT 32270391 Upstream 46bp
chr5 33466984 33466984 1 + A G UCEC 33466993 + 33466973 33467013 41 TAGGTACGACAACAATTCCACGATGCCAAATTCATGGCAGA TAGGTACGACAGCAATTCCACGATGCCAAATTCATGGCAGA < 41bp 1 0.20535598826906 1 0.201243489980698 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33466993 chr5:33466984 synonymous SNV . 0 12 hm5C_associated_SNPs_39454 0 0 1 0 1 TARS chr5:33466976 3'AG 33466976 Downstream 9bp
chr2 209189995 209189995 1 + A G UCEC 209190000 + 209189980 209190020 41 GTTTTTGTTTGTAGAACAAACCAAGACACTGATGTTTTTTG GTTTTTGTTTGTAGAGCAAACCAAGACACTGATGTTTTTTG < 41bp 1 0.100658298222141 1 0.174653828144073 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PIKFYVE ENSG00000115020 CDS Human protein_coding chr2:209190000 chr2:209189995 synonymous SNV . 0 16 hm5C_associated_SNPs_39455 0 0 1 0 1 PIKFYVE chr2:209189994 3'AG 209189994 Downstream 2bp
chr2 173352749 173352749 1 + G A UCEC 173352763 + 173352743 173352783 41 TGAACTGCTTTTATCGGTCTCGGGGTAAGTGTTTGTGTTTA TGAACTACTTTTATCGGTCTCGGGGTAAGTGTTTGTGTTTA < 41bp 1 0.692584506938052 1 0.906514644622803 experiment 0.614830986123896 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173352763 chr2:173352749 synonymous SNV . 0 7 hm5C_associated_SNPs_39456 0 0 1 0 2 ITGA6 chr2:173352689 3'AG 173352689 Downstream 61bp
chr2 173352749 173352749 1 + G A UCEC 173352763 + 173352743 173352783 41 TGAACTGCTTTTATCGGTCTCGGGGTAAGTGTTTGTGTTTA TGAACTACTTTTATCGGTCTCGGGGTAAGTGTTTGTGTTTA < 41bp 1 0.692584506938052 1 0.906514644622803 experiment 0.614830986123896 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173352763 chr2:173352749 synonymous SNV . 0 7 hm5C_associated_SNPs_39456 0 0 1 0 2 ITGA6 chr2:173352766 5'GT 173352766 Upstream 18bp
chr5 179151676 179151676 1 + G A UCEC 179151661 + 179151641 179151681 41 TTTGGGGAACATTTCAGAAACAGACCAGTGGTATGGAGTAT TTTGGGGAACATTTCAGAAACAGACCAGTGGTATGAAGTAT < 41bp 1 0.225209203776019 1 0.226558208465576 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179151661 chr5:179151676 nonsynonymous SNV 0.912 1 36 hm5C_associated_SNPs_39457 0 0 1 0 1 CANX chr5:179151658 3'AG 179151658 Downstream 19bp
chr5 179151676 179151676 1 + G A UCEC 179151665 + 179151645 179151685 41 GGGAACATTTCAGAAACAGACCAGTGGTATGGAGTATAAGA GGGAACATTTCAGAAACAGACCAGTGGTATGAAGTATAAGA < 41bp 1 0.205705711306084 1 0.0717135071754456 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179151665 chr5:179151676 nonsynonymous SNV 0.912 1 32 hm5C_associated_SNPs_39458 0 0 1 0 1 CANX chr5:179151658 3'AG 179151658 Downstream 19bp
chr5 179151676 179151676 1 + G A UCEC 179151689 + 179151669 179151709 41 TGGTATGGAGTATAAGAAAACTGATGCACCTCAACCGGATG TGGTATGAAGTATAAGAAAACTGATGCACCTCAACCGGATG < 41bp 1 0.453344356477707 1 0.364013880491257 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151689 chr5:179151676 nonsynonymous SNV 0.912 1 8 hm5C_associated_SNPs_39459 0 0 1 0 1 CANX chr5:179151658 3'AG 179151658 Downstream 19bp
chr11 9456541 9456541 1 + C T UCEC 9456531 + 9456511 9456551 41 CAGTTGATACAGACACACTTCTGTCTGACACCAAGTATCTT CAGTTGATACAGACACACTTCTGTCTGACATCAAGTATCTT < 41bp 1 0.124630311832593 1 0.151549518108368 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9456531 chr11:9456541 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_39460 0 0 1 0 2 IPO7 chr11:9456481 3'AG 9456481 Downstream 61bp
chr11 9456541 9456541 1 + C T UCEC 9456531 + 9456511 9456551 41 CAGTTGATACAGACACACTTCTGTCTGACACCAAGTATCTT CAGTTGATACAGACACACTTCTGTCTGACATCAAGTATCTT < 41bp 1 0.124630311832593 1 0.151549518108368 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9456531 chr11:9456541 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_39460 0 0 1 0 2 IPO7 chr11:9456578 5'GT 9456578 Upstream 38bp
chr20 62373310 62373310 1 + C T UCEC 62373328 + 62373308 62373348 41 GACCTGGCCAGTGACCAGTCCTCTCCGTCCACCCCGTCACC GATCTGGCCAGTGACCAGTCCTCTCCGTCCACCCCGTCACC < 41bp 1 0.0965750841542452 1 0.0432239472866058 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62373328 chr20:62373310 synonymous SNV . 0 3 hm5C_associated_SNPs_39461 0 0 1 0 2 SLC2A4RG chr20:62373222 3'AG 62373222 Downstream 89bp
chr20 62373310 62373310 1 + C T UCEC 62373328 + 62373308 62373348 41 GACCTGGCCAGTGACCAGTCCTCTCCGTCCACCCCGTCACC GATCTGGCCAGTGACCAGTCCTCTCCGTCCACCCCGTCACC < 41bp 1 0.0965750841542452 1 0.0432239472866058 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62373328 chr20:62373310 synonymous SNV . 0 3 hm5C_associated_SNPs_39461 0 0 1 0 2 SLC2A4RG chr20:62373409 5'GT 62373409 Upstream 100bp
chr11 10774294 10774294 1 + C A UCEC 10774299 + 10774279 10774319 41 CAGGAACACACACAACTGCACATATGGATTGCTTTGGCGGT CAGGAACACACACAAATGCACATATGGATTGCTTTGGCGGT < 41bp 1 0.0799541728936119 1 0.0257505178451538 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CTR9 ENSG00000198730 CDS Human protein_coding chr11:10774299 chr11:10774294 nonsynonymous SNV 0.997 2 16 hm5C_associated_SNPs_39464 0 0 1 0 2 CTR9 chr11:10774219 3'AG 10774219 Downstream 76bp
chr11 10774294 10774294 1 + C A UCEC 10774299 + 10774279 10774319 41 CAGGAACACACACAACTGCACATATGGATTGCTTTGGCGGT CAGGAACACACACAAATGCACATATGGATTGCTTTGGCGGT < 41bp 1 0.0799541728936119 1 0.0257505178451538 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CTR9 ENSG00000198730 CDS Human protein_coding chr11:10774299 chr11:10774294 nonsynonymous SNV 0.997 2 16 hm5C_associated_SNPs_39464 0 0 1 0 2 CTR9 chr11:10774317 5'GT 10774317 Upstream 24bp
chr11 10774294 10774294 1 + C A UCEC 10774310 + 10774290 10774330 41 ACAACTGCACATATGGATTGCTTTGGCGGTCAGTATTCATG ACAAATGCACATATGGATTGCTTTGGCGGTCAGTATTCATG < 41bp 1 0.0848543029941814 1 0.0118987560272217 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTR9 ENSG00000198730 CDS Human protein_coding chr11:10774310 chr11:10774294 nonsynonymous SNV 0.997 2 5 hm5C_associated_SNPs_39465 0 0 1 0 2 CTR9 chr11:10774219 3'AG 10774219 Downstream 76bp
chr11 10774294 10774294 1 + C A UCEC 10774310 + 10774290 10774330 41 ACAACTGCACATATGGATTGCTTTGGCGGTCAGTATTCATG ACAAATGCACATATGGATTGCTTTGGCGGTCAGTATTCATG < 41bp 1 0.0848543029941814 1 0.0118987560272217 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTR9 ENSG00000198730 CDS Human protein_coding chr11:10774310 chr11:10774294 nonsynonymous SNV 0.997 2 5 hm5C_associated_SNPs_39465 0 0 1 0 2 CTR9 chr11:10774317 5'GT 10774317 Upstream 24bp
chr17 4053193 4053193 1 + G A UCEC 4053212 + 4053192 4053232 41 CGCATCCAGAGCTTTCGTGACCGGGGACTGTTCTGAAGCAG CACATCCAGAGCTTTCGTGACCGGGGACTGTTCTGAAGCAG < 41bp 1 0.615977087127858 1 0.900657534599304 experiment 0.768045825744285 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CYB5D2 ENSG00000167740 CDS Human protein_coding chr17:4053212 chr17:4053193 nonsynonymous SNV 0.942 5 2 hm5C_associated_SNPs_39466 0 0 0 0 1 CYB5D2 chr17:4053185 3'AG 4053185 Downstream 9bp
chr7 130021483 130021483 1 + C T UCEC 130021476 + 130021456 130021496 41 TCTTGTCCTCCCCAGCTGGACTTCTGGCGGGGGCCTGCCCA TCTTGTCCTCCCCAGCTGGACTTCTGGTGGGGGCCTGCCCA < 41bp 1 0.400159612790937 1 0.0716961920261383 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021476 chr7:130021483 nonsynonymous SNV 0.896 3 28 hm5C_associated_SNPs_39467 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 13bp
chr7 130021483 130021483 1 + C T UCEC 130021476 + 130021456 130021496 41 TCTTGTCCTCCCCAGCTGGACTTCTGGCGGGGGCCTGCCCA TCTTGTCCTCCCCAGCTGGACTTCTGGTGGGGGCCTGCCCA < 41bp 1 0.400159612790937 1 0.0716961920261383 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021476 chr7:130021483 nonsynonymous SNV 0.896 3 28 hm5C_associated_SNPs_39467 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 39bp
chr7 130021483 130021483 1 + C T UCEC 130021489 + 130021469 130021509 41 AGCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCC AGCTGGACTTCTGGTGGGGGCCTGCCCACCCTGGCTCCCCC < 41bp 1 0.125580117659357 1 0.531158030033112 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021489 chr7:130021483 nonsynonymous SNV 0.896 3 15 hm5C_associated_SNPs_39468 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 13bp
chr7 130021483 130021483 1 + C T UCEC 130021489 + 130021469 130021509 41 AGCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCC AGCTGGACTTCTGGTGGGGGCCTGCCCACCCTGGCTCCCCC < 41bp 1 0.125580117659357 1 0.531158030033112 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021489 chr7:130021483 nonsynonymous SNV 0.896 3 15 hm5C_associated_SNPs_39468 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 39bp
chr7 130021483 130021483 1 + C T UCEC 130021490 + 130021470 130021510 41 GCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCA GCTGGACTTCTGGTGGGGGCCTGCCCACCCTGGCTCCCCCA < 41bp 1 0.53577865506807 1 0.35852175951004 experiment 0.928442689863859 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021490 chr7:130021483 nonsynonymous SNV 0.896 3 14 hm5C_associated_SNPs_39469 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 13bp
chr7 130021483 130021483 1 + C T UCEC 130021490 + 130021470 130021510 41 GCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCA GCTGGACTTCTGGTGGGGGCCTGCCCACCCTGGCTCCCCCA < 41bp 1 0.53577865506807 1 0.35852175951004 experiment 0.928442689863859 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021490 chr7:130021483 nonsynonymous SNV 0.896 3 14 hm5C_associated_SNPs_39469 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 39bp
chr7 130021483 130021483 1 + C T UCEC 130021493 + 130021473 130021513 41 GGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCG GGACTTCTGGTGGGGGCCTGCCCACCCTGGCTCCCCCATCG < 41bp 1 0.311271907979497 1 0.374046921730042 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021493 chr7:130021483 nonsynonymous SNV 0.896 3 11 hm5C_associated_SNPs_39470 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 13bp
chr7 130021483 130021483 1 + C T UCEC 130021493 + 130021473 130021513 41 GGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCG GGACTTCTGGTGGGGGCCTGCCCACCCTGGCTCCCCCATCG < 41bp 1 0.311271907979497 1 0.374046921730042 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021493 chr7:130021483 nonsynonymous SNV 0.896 3 11 hm5C_associated_SNPs_39470 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 39bp
chr7 130021483 130021483 1 + C T UCEC 130021494 + 130021474 130021514 41 GACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGA GACTTCTGGTGGGGGCCTGCCCACCCTGGCTCCCCCATCGA < 41bp 1 0.335537932595285 1 0.178649842739105 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021494 chr7:130021483 nonsynonymous SNV 0.896 3 10 hm5C_associated_SNPs_39471 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 13bp
chr7 130021483 130021483 1 + C T UCEC 130021494 + 130021474 130021514 41 GACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGA GACTTCTGGTGGGGGCCTGCCCACCCTGGCTCCCCCATCGA < 41bp 1 0.335537932595285 1 0.178649842739105 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021494 chr7:130021483 nonsynonymous SNV 0.896 3 10 hm5C_associated_SNPs_39471 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 39bp
chr7 130021483 130021483 1 + C T UCEC 130021495 + 130021475 130021515 41 ACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGAC ACTTCTGGTGGGGGCCTGCCCACCCTGGCTCCCCCATCGAC < 41bp 1 0.775973872079679 1 0.307992994785309 experiment 0.448052255840642 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021495 chr7:130021483 nonsynonymous SNV 0.896 3 9 hm5C_associated_SNPs_39472 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 13bp
chr7 130021483 130021483 1 + C T UCEC 130021495 + 130021475 130021515 41 ACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGAC ACTTCTGGTGGGGGCCTGCCCACCCTGGCTCCCCCATCGAC < 41bp 1 0.775973872079679 1 0.307992994785309 experiment 0.448052255840642 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021495 chr7:130021483 nonsynonymous SNV 0.896 3 9 hm5C_associated_SNPs_39472 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 39bp
chr7 130021483 130021483 1 + C T UCEC 130021497 + 130021477 130021517 41 TTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGT TTCTGGTGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGT < 41bp 1 0.499160573237747 1 0.0657855272293091 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021497 chr7:130021483 nonsynonymous SNV 0.896 3 7 hm5C_associated_SNPs_39473 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 13bp
chr7 130021483 130021483 1 + C T UCEC 130021497 + 130021477 130021517 41 TTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGT TTCTGGTGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGT < 41bp 1 0.499160573237747 1 0.0657855272293091 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021497 chr7:130021483 nonsynonymous SNV 0.896 3 7 hm5C_associated_SNPs_39473 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 39bp
chr7 130021483 130021483 1 + C T UCEC 130021498 + 130021478 130021518 41 TCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC TCTGGTGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC < 41bp 1 0.653251029266563 1 0.132432341575623 experiment 0.693497941466873 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021498 chr7:130021483 nonsynonymous SNV 0.896 3 6 hm5C_associated_SNPs_39474 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 13bp
chr7 130021483 130021483 1 + C T UCEC 130021498 + 130021478 130021518 41 TCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC TCTGGTGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC < 41bp 1 0.653251029266563 1 0.132432341575623 experiment 0.693497941466873 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021498 chr7:130021483 nonsynonymous SNV 0.896 3 6 hm5C_associated_SNPs_39474 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 39bp
chr7 130021483 130021483 1 + C T UCEC 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT TGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT < 41bp 1 0.209915998317684 1 0.103125393390656 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021483 nonsynonymous SNV 0.896 3 1 hm5C_associated_SNPs_39475 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 13bp
chr7 130021483 130021483 1 + C T UCEC 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT TGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT < 41bp 1 0.209915998317684 1 0.103125393390656 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021483 nonsynonymous SNV 0.896 3 1 hm5C_associated_SNPs_39475 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 39bp
chr9 96420503 96420503 1 + G A UCEC 96420497 + 96420477 96420517 41 AAAATTCTCAATGGTGCTTTCCGATCGTGGACGAAGAAGCA AAAATTCTCAATGGTGCTTTCCGATCATGGACGAAGAAGCA < 41bp 1 0.070917336261729 1 0.529219090938568 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96420497 chr9:96420503 synonymous SNV . 0 27 hm5C_associated_SNPs_39476 0 0 1 0 2 PHF2 chr9:96420427 3'AG 96420427 Downstream 77bp
chr9 96420503 96420503 1 + G A UCEC 96420497 + 96420477 96420517 41 AAAATTCTCAATGGTGCTTTCCGATCGTGGACGAAGAAGCA AAAATTCTCAATGGTGCTTTCCGATCATGGACGAAGAAGCA < 41bp 1 0.070917336261729 1 0.529219090938568 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96420497 chr9:96420503 synonymous SNV . 0 27 hm5C_associated_SNPs_39476 0 0 1 0 2 PHF2 chr9:96420518 5'GT 96420518 Upstream 16bp
chr7 4260897 4260897 1 + C A UCEC 4260905 + 4260885 4260925 41 CCTAGAGATGTCCTGGTCACCAAGTCCGCCTCTGAACTGAC CCTAGAGATGTCATGGTCACCAAGTCCGCCTCTGAACTGAC < 41bp 1 0.205721036666859 1 0.528329432010651 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SDK1 ENSG00000146555 CDS Human protein_coding chr7:4260905 chr7:4260897 nonsynonymous SNV 0.500 0 13 hm5C_associated_SNPs_39478 0 0 0 0 2 SDK1 chr7:4260871 3'AG 4260871 Downstream 27bp
chr7 4260897 4260897 1 + C A UCEC 4260905 + 4260885 4260925 41 CCTAGAGATGTCCTGGTCACCAAGTCCGCCTCTGAACTGAC CCTAGAGATGTCATGGTCACCAAGTCCGCCTCTGAACTGAC < 41bp 1 0.205721036666859 1 0.528329432010651 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SDK1 ENSG00000146555 CDS Human protein_coding chr7:4260905 chr7:4260897 nonsynonymous SNV 0.500 0 13 hm5C_associated_SNPs_39478 0 0 0 0 2 SDK1 chr7:4260996 5'GT 4260996 Upstream 100bp
chr4 1332373 1332373 1 + A G UCEC 1332384 + 1332364 1332404 41 CCGCCCATGATGCTGCCCAACGGCTACGTCTACGGCTACAA CCGCCCATGGTGCTGCCCAACGGCTACGTCTACGGCTACAA < 41bp 1 0.665100428933961 1 0.409021198749542 experiment 0.669799142132079 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAEA ENSG00000090316 CDS Human protein_coding chr4:1332384 chr4:1332373 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_39479 0 0 1 3 1 MAEA chr4:1332405 5'GT 1332405 Upstream 33bp
chr19 6743025 6743025 1 + A C UCEC 6743009 + 6742989 6743029 41 AACAGTCCTTCGTACAGATTCTCCAGGAGGTGAATGACTTT AACAGTCCTTCGTACAGATTCTCCAGGAGGTGAATGCCTTT < 41bp 1 0.767486155416778 1 0.792683780193329 experiment 0.465027689166443 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6743009 chr19:6743025 nonsynonymous SNV 0.979 2 37 hm5C_associated_SNPs_39480 0 0 1 0 1 TRIP10 chr19:6742978 3'AG 6742978 Downstream 48bp
chr2 238976793 238976793 1 + C A UCEC 238976802 + 238976782 238976822 41 AATCTTCACTTCCGGGGGCACTGAGGTAAAGCTTCTGAACA AATCTTCACTTACGGGGGCACTGAGGTAAAGCTTCTGAACA < 41bp 1 0.355545893536814 1 0.154011338949203 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCLY ENSG00000132330 CDS Human protein_coding chr2:238976802 chr2:238976793 nonsynonymous SNV 0.600 5 12 hm5C_associated_SNPs_39481 0 0 1 0 2 SCLY chr2:238976706 3'AG 238976706 Downstream 88bp
chr2 238976793 238976793 1 + C A UCEC 238976802 + 238976782 238976822 41 AATCTTCACTTCCGGGGGCACTGAGGTAAAGCTTCTGAACA AATCTTCACTTACGGGGGCACTGAGGTAAAGCTTCTGAACA < 41bp 1 0.355545893536814 1 0.154011338949203 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCLY ENSG00000132330 CDS Human protein_coding chr2:238976802 chr2:238976793 nonsynonymous SNV 0.600 5 12 hm5C_associated_SNPs_39481 0 0 1 0 2 SCLY chr2:238976806 5'GT 238976806 Upstream 14bp
chr4 113189384 113189384 1 + A C UCEC 113189402 + 113189382 113189422 41 GAAGACTGGAAGTAATCCTACATCAGCCTCTGATGATTCCA GACGACTGGAAGTAATCCTACATCAGCCTCTGATGATTCCA < 41bp 1 0.390898365941388 1 0.070795089006424 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP1AR ENSG00000138660 CDS Human protein_coding chr4:113189402 chr4:113189384 nonsynonymous SNV 0.964 2 3 hm5C_associated_SNPs_39482 0 0 1 0 1 AP1AR chr4:113189300 3'AG 113189300 Downstream 85bp
chr10 75506643 75506643 1 + C T UCEC 75506660 + 75506640 75506680 41 AGCCCATCTACCCAGGGTATCATCAGTCCAGCTATGGTGGG AGCTCATCTACCCAGGGTATCATCAGTCCAGCTATGGTGGG < 41bp 1 0.607321903861804 1 0.275574505329132 experiment 0.785356192276393 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75506660 chr10:75506643 nonsynonymous SNV 0.894 3 4 hm5C_associated_SNPs_39483 0 0 1 0 1 SEC24C chr10:75506563 3'AG 75506563 Downstream 81bp
chr5 112868663 112868663 1 + G A UCEC 112868670 + 112868650 112868690 41 ATTGGCAGCTATCGCTGTGGCTGAAAGAGTTGCCGCAGAGA ATTGGCAGCTATCACTGTGGCTGAAAGAGTTGCCGCAGAGA < 41bp 1 0.77120599896092 1 0.507181167602539 experiment 0.457588002078161 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868670 chr5:112868663 nonsynonymous SNV 0.991 1 14 hm5C_associated_SNPs_39484 0 0 1 0 2 YTHDC2 chr5:112868576 3'AG 112868576 Downstream 88bp
chr5 112868663 112868663 1 + G A UCEC 112868670 + 112868650 112868690 41 ATTGGCAGCTATCGCTGTGGCTGAAAGAGTTGCCGCAGAGA ATTGGCAGCTATCACTGTGGCTGAAAGAGTTGCCGCAGAGA < 41bp 1 0.77120599896092 1 0.507181167602539 experiment 0.457588002078161 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868670 chr5:112868663 nonsynonymous SNV 0.991 1 14 hm5C_associated_SNPs_39484 0 0 1 0 2 YTHDC2 chr5:112868742 5'GT 112868742 Upstream 80bp
chr5 112868663 112868663 1 + G A UCEC 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA CACTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA < 41bp 1 0.50189234308597 1 0.0923890769481659 experiment 0.996215313828059 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868663 nonsynonymous SNV 0.991 1 2 hm5C_associated_SNPs_39485 0 0 1 0 2 YTHDC2 chr5:112868576 3'AG 112868576 Downstream 88bp
chr5 112868663 112868663 1 + G A UCEC 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA CACTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA < 41bp 1 0.50189234308597 1 0.0923890769481659 experiment 0.996215313828059 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868663 nonsynonymous SNV 0.991 1 2 hm5C_associated_SNPs_39485 0 0 1 0 2 YTHDC2 chr5:112868742 5'GT 112868742 Upstream 80bp
chr5 112868663 112868663 1 + G A UCEC 112868683 + 112868663 112868703 41 GCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT ACTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT < 41bp 1 0.611604778415665 1 0.714749813079834 experiment 0.776790443168669 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868683 chr5:112868663 nonsynonymous SNV 0.991 1 1 hm5C_associated_SNPs_39486 0 0 1 0 2 YTHDC2 chr5:112868576 3'AG 112868576 Downstream 88bp
chr5 112868663 112868663 1 + G A UCEC 112868683 + 112868663 112868703 41 GCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT ACTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT < 41bp 1 0.611604778415665 1 0.714749813079834 experiment 0.776790443168669 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868683 chr5:112868663 nonsynonymous SNV 0.991 1 1 hm5C_associated_SNPs_39486 0 0 1 0 2 YTHDC2 chr5:112868742 5'GT 112868742 Upstream 80bp
chr20 2635125 2635125 1 + C A UCEC 2635143 + 2635123 2635163 41 TACTCTTGGGAGTTGGGGATCCCAAGATTGGTGCCGCAATA TAATCTTGGGAGTTGGGGATCCCAAGATTGGTGCCGCAATA < 41bp 1 0.554773737911943 1 0.151892215013504 experiment 0.890452524176114 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635143 chr20:2635125 nonsynonymous SNV 1.000 0 3 hm5C_associated_SNPs_39488 0 0 1 1 2 NOP56 chr20:2635060 3'AG 2635060 Downstream 66bp
chr20 2635125 2635125 1 + C A UCEC 2635143 + 2635123 2635163 41 TACTCTTGGGAGTTGGGGATCCCAAGATTGGTGCCGCAATA TAATCTTGGGAGTTGGGGATCCCAAGATTGGTGCCGCAATA < 41bp 1 0.554773737911943 1 0.151892215013504 experiment 0.890452524176114 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635143 chr20:2635125 nonsynonymous SNV 1.000 0 3 hm5C_associated_SNPs_39488 0 0 1 1 2 NOP56 chr20:2635221 5'GT 2635221 Upstream 97bp
chr6 138727146 138727146 1 + G A UCEC 138727165 + 138727145 138727185 41 CGTGGAGCCTGGTTCAGGTCCTTTTAGTGAGTCTACCATTA CATGGAGCCTGGTTCAGGTCCTTTTAGTGAGTCTACCATTA < 41bp 1 0.0804513566133072 1 0.01893350481987 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HEBP2 ENSG00000051620 CDS Human protein_coding chr6:138727165 chr6:138727146 nonsynonymous SNV 0.991 2 2 hm5C_associated_SNPs_39489 0 0 1 0 1 HEBP2 chr6:138727108 3'AG 138727108 Downstream 39bp
chr12 95897859 95897859 1 + C T UCEC 95897862 + 95897842 95897882 41 GTGCTGGAATTGATGTTCGTCTGTGTGATGTTGGTGAGGCC GTGCTGGAATTGATGTTTGTCTGTGTGATGTTGGTGAGGCC < 41bp 1 0.550104769133932 1 0.656402468681335 experiment 0.899790461732136 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95897862 chr12:95897859 nonsynonymous SNV 0.992 4 18 hm5C_associated_SNPs_39490 0 0 1 2 1 METAP2 chr12:95897937 5'GT 95897937 Upstream 79bp
chr9 90261452 90261452 1 + C T UCEC 90261459 + 90261439 90261479 41 ATTAAAAGAGGCTCGAGAATCGATGTCCAGGATAAGGTCAT ATTAAAAGAGGCTTGAGAATCGATGTCCAGGATAAGGTCAT < 41bp 1 0.177316428003596 1 0.479404389858246 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90261459 chr9:90261452 nonsynonymous SNV 0.999 1 14 hm5C_associated_SNPs_39491 0 0 0 0 2 DAPK1 chr9:90261376 3'AG 90261376 Downstream 77bp
chr9 90261452 90261452 1 + C T UCEC 90261459 + 90261439 90261479 41 ATTAAAAGAGGCTCGAGAATCGATGTCCAGGATAAGGTCAT ATTAAAAGAGGCTTGAGAATCGATGTCCAGGATAAGGTCAT < 41bp 1 0.177316428003596 1 0.479404389858246 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90261459 chr9:90261452 nonsynonymous SNV 0.999 1 14 hm5C_associated_SNPs_39491 0 0 0 0 2 DAPK1 chr9:90261474 5'GT 90261474 Upstream 23bp
chr14 68042173 68042173 1 + G A UCEC 68042177 + 68042157 68042197 41 ATCTTCTACTACTATCGGAGCCATGAGGACAAGGTACTTCT ATCTTCTACTACTATCAGAGCCATGAGGACAAGGTACTTCT < 41bp 1 0.0473085443683196 1 0.0995316207408905 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68042177 chr14:68042173 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_39492 0 0 1 0 2 PLEKHH1 chr14:68042109 3'AG 68042109 Downstream 65bp
chr14 68042173 68042173 1 + G A UCEC 68042177 + 68042157 68042197 41 ATCTTCTACTACTATCGGAGCCATGAGGACAAGGTACTTCT ATCTTCTACTACTATCAGAGCCATGAGGACAAGGTACTTCT < 41bp 1 0.0473085443683196 1 0.0995316207408905 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68042177 chr14:68042173 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_39492 0 0 1 0 2 PLEKHH1 chr14:68042189 5'GT 68042189 Upstream 17bp
chr6 3015784 3015784 1 + C T UCEC 3015789 + 3015769 3015809 41 GCTGTACTGGTTCAGCGTGCCAGCCATCCTGAAGGGCTGGA GCTGTACTGGTTCAGTGTGCCAGCCATCCTGAAGGGCTGGA < 41bp 1 0.432955098077166 1 0.285855293273926 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NQO2 ENSG00000124588 CDS Human protein_coding chr6:3015789 chr6:3015784 synonymous SNV . 0 16 hm5C_associated_SNPs_39493 0 0 1 0 2 NQO2 chr6:3015764 3'AG 3015764 Downstream 21bp
chr6 3015784 3015784 1 + C T UCEC 3015789 + 3015769 3015809 41 GCTGTACTGGTTCAGCGTGCCAGCCATCCTGAAGGGCTGGA GCTGTACTGGTTCAGTGTGCCAGCCATCCTGAAGGGCTGGA < 41bp 1 0.432955098077166 1 0.285855293273926 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NQO2 ENSG00000124588 CDS Human protein_coding chr6:3015789 chr6:3015784 synonymous SNV . 0 16 hm5C_associated_SNPs_39493 0 0 1 0 2 NQO2 chr6:3015877 5'GT 3015877 Upstream 94bp
chr16 3707751 3707751 1 + C T UCEC 3707766 + 3707746 3707786 41 CGAGGCGCCGTTGTTCCCGACTCGGCTCTTCCCTTTAACTT CGAGGTGCCGTTGTTCCCGACTCGGCTCTTCCCTTTAACTT < 41bp 1 0.648786366873135 1 0.534785211086273 experiment 0.702427266253731 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707766 chr16:3707751 synonymous SNV . 0 6 hm5C_associated_SNPs_39495 0 0 0 0 2 DNASE1 chr16:3707721 3'AG 3707721 Downstream 31bp
chr16 3707751 3707751 1 + C T UCEC 3707766 + 3707746 3707786 41 CGAGGCGCCGTTGTTCCCGACTCGGCTCTTCCCTTTAACTT CGAGGTGCCGTTGTTCCCGACTCGGCTCTTCCCTTTAACTT < 41bp 1 0.648786366873135 1 0.534785211086273 experiment 0.702427266253731 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707766 chr16:3707751 synonymous SNV . 0 6 hm5C_associated_SNPs_39495 0 0 0 0 2 DNASE1 chr16:3707817 5'GT 3707817 Upstream 67bp
chr10 115485138 115485138 1 + A G UCEC 115485145 + 115485125 115485165 41 TGAAGAGGACCATACAAATGCCGCCTGCTTCGCCTGCATCC TGAAGAGGACCATGCAAATGCCGCCTGCTTCGCCTGCATCC < 41bp 1 0.294518568555785 1 0.113142400979996 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115485145 chr10:115485138 nonsynonymous SNV 0.969 1 14 hm5C_associated_SNPs_39496 0 0 1 0 2 CASP7 chr10:115485121 3'AG 115485121 Downstream 18bp
chr10 115485138 115485138 1 + A G UCEC 115485145 + 115485125 115485165 41 TGAAGAGGACCATACAAATGCCGCCTGCTTCGCCTGCATCC TGAAGAGGACCATGCAAATGCCGCCTGCTTCGCCTGCATCC < 41bp 1 0.294518568555785 1 0.113142400979996 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115485145 chr10:115485138 nonsynonymous SNV 0.969 1 14 hm5C_associated_SNPs_39496 0 0 1 0 2 CASP7 chr10:115485188 5'GT 115485188 Upstream 51bp
chr3 40503481 40503481 1 + C A UCEC 40503488 + 40503468 40503508 41 AAAGGCAGCTCTCCTGAAAGCTTCTCCCAAAAAAGCACCTG AAAGGCAGCTCTCATGAAAGCTTCTCCCAAAAAAGCACCTG < 41bp 1 0.205928527450293 1 0.138281315565109 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL14 ENSG00000188846 CDS Human other chr3:40503488 chr3:40503481 nonsynonymous SNV 0.998 1 14 hm5C_associated_SNPs_39497 0 0 0 0 1 RPL14 chr3:40503430 3'AG 40503430 Downstream 52bp
chr12 53495885 53495885 1 + C G UCEC 53495902 + 53495882 53495922 41 GGGCAAGTCCCTGCCAGGGTCTCCAGATGGCAATGGAAGCT GGGGAAGTCCCTGCCAGGGTCTCCAGATGGCAATGGAAGCT < 41bp 1 0.761523430076101 1 0.907381534576416 experiment 0.476953139847797 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IGFBP6 ENSG00000167779 CDS Human protein_coding chr12:53495902 chr12:53495885 synonymous SNV . 0 4 hm5C_associated_SNPs_39500 0 0 0 0 1 IGFBP6 chr12:53495829 3'AG 53495829 Downstream 57bp
chr7 150769155 150769155 1 + A G UCEC 150769166 + 150769146 150769186 41 TCCCGCTTCACCCAGGAGATCTTCGCCTTCTTGATCTCACT TCCCGCTTCGCCCAGGAGATCTTCGCCTTCTTGATCTCACT < 41bp 1 0.0836943010483205 1 0.0537152588367462 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150769166 chr7:150769155 nonsynonymous SNV 1.000 5 10 hm5C_associated_SNPs_39503 0 0 1 0 1 SLC4A2 chr7:150769223 5'GT 150769223 Upstream 69bp
chr7 101925148 101925148 1 + C T UCEC 101925146 + 101925126 101925166 41 TCCCAGGGGCGTCTGGTTCTCTCCAACAAGATGGCGCGCAC TCCCAGGGGCGTCTGGTTCTCTTCAACAAGATGGCGCGCAC < 41bp 1 0.621020183791068 1 0.685818672180176 experiment 0.757959632417864 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101925146 chr7:101925148 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_39504 0 0 0 1 2 CUX1 chr7:101925132 3'AG 101925132 Downstream 17bp
chr7 101925148 101925148 1 + C T UCEC 101925146 + 101925126 101925166 41 TCCCAGGGGCGTCTGGTTCTCTCCAACAAGATGGCGCGCAC TCCCAGGGGCGTCTGGTTCTCTTCAACAAGATGGCGCGCAC < 41bp 1 0.621020183791068 1 0.685818672180176 experiment 0.757959632417864 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101925146 chr7:101925148 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_39504 0 0 0 1 2 CUX1 chr7:101925212 5'GT 101925212 Upstream 65bp
chr2 219269098 219269098 1 + C T UCEC 219269106 + 219269086 219269126 41 GAGCAACTCAGCCGTGTGGACGACGTGTACTCAGTGCTCAG GAGCAACTCAGCTGTGTGGACGACGTGTACTCAGTGCTCAG < 41bp 1 0.599249308258323 1 0.203542053699493 experiment 0.801501383483354 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219269106 chr2:219269098 nonsynonymous SNV 0.998 3 13 hm5C_associated_SNPs_39505 0 0 1 0 1 CTDSP1 chr2:219269020 3'AG 219269020 Downstream 79bp
chr2 231931701 231931701 1 + G A UCEC 231931688 + 231931668 231931708 41 TGCCTGAAGGAGAAAAAAAACCAATTGACCAGAGATTGGAA TGCCTGAAGGAGAAAAAAAACCAATTGACCAGAAATTGGAA < 41bp 1 0.166113249478852 1 0.179033100605011 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231931688 chr2:231931701 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_39507 0 0 1 0 1 PSMD1 chr2:231931620 3'AG 231931620 Downstream 82bp
chr2 231931701 231931701 1 + G A UCEC 231931696 + 231931676 231931716 41 GGAGAAAAAAAACCAATTGACCAGAGATTGGAAGGCATCGT GGAGAAAAAAAACCAATTGACCAGAAATTGGAAGGCATCGT < 41bp 1 0.532981947909068 1 0.0589966475963593 experiment 0.934036104181864 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231931696 chr2:231931701 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_39508 0 0 1 0 1 PSMD1 chr2:231931620 3'AG 231931620 Downstream 82bp
chr20 43052669 43052669 1 + C T UCEC 43052674 + 43052654 43052694 41 GTAGATGCCAAGGGGCTGAGCGATCCAGGGAAGATCAAGCG GTAGATGCCAAGGGGTTGAGCGATCCAGGGAAGATCAAGCG < 41bp 1 0.169677987506017 1 0.687112629413605 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HNF4A ENSG00000101076 CDS Human protein_coding chr20:43052674 chr20:43052669 synonymous SNV . 0 16 hm5C_associated_SNPs_39509 0 0 1 0 1 HNF4A chr20:43052658 3'AG 43052658 Downstream 12bp
chr12 88439535 88439535 1 + A G UCEC 88439525 + 88439505 88439545 41 TTAGAACAAACACTGGAACTCATAGGAACAAATATCAATGG TTAGAACAAACACTGGAACTCATAGGAACAGATATCAATGG < 41bp 1 0.477597656908604 1 0.336816757917404 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C12orf29 ENSG00000133641 CDS Human protein_coding chr12:88439525 chr12:88439535 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_39510 0 0 1 1 1 C12orf29 chr12:88439556 5'GT 88439556 Upstream 22bp
chr4 37857255 37857255 1 + A G UCEC 37857261 + 37857241 37857281 41 AGTAAAAGCAGCCAAATGATCACCTTCACCTTTGCTAATGG AGTAAAAGCAGCCAGATGATCACCTTCACCTTTGCTAATGG < 41bp 1 0.665394468921285 1 0.226862341165543 experiment 0.66921106215743 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PGM2 ENSG00000169299 CDS Human protein_coding chr4:37857261 chr4:37857255 synonymous SNV . 0 15 hm5C_associated_SNPs_39511 0 0 0 0 1 PGM2 chr4:37857229 3'AG 37857229 Downstream 27bp
chr10 70100940 70100940 1 + C T UCEC 70100936 + 70100916 70100956 41 TTTCCTTTTATTTAGTTCTTCTCACCACTAAATCCAATACG TTTCCTTTTATTTAGTTCTTCTCATCACTAAATCCAATACG < 41bp 1 0.18462297344829 1 0.0835807323455811 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPH3 ENSG00000096746;ENSG00000204130 CDS Human other chr10:70100936 chr10:70100940 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_39512 0 0 1 0 1 HNRNPH3 chr10:70100931 3'AG 70100931 Downstream 10bp
chr11 557915 557915 1 - C T UCEC 557932 - 557912 557952 41 TGCCTCCTGCAGCTGGCCCGCTCCTCGTGGGTGGGCCGCAT TGCCTCCTGCAGCTGGCCCGCTCCTCGTGGGTGGGCCACAT < 41bp 1 0.27674795980839 1 0.419878095388412 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMNTD2 ENSG00000185522 CDS Human protein_coding chr11:557932 chr11:557915 nonsynonymous SNV 0.027 3 38 hm5C_associated_SNPs_39513 0 0 1 0 1 LMNTD2 chr11:557884 5'GT 557884 Upstream 32bp
chr10 70962725 70962725 1 + C A UCEC 70962706 + 70962686 70962726 41 AAATTTTCTGCAGAGTTGATCCAGCATATTCCACTAAGTCT AAATTTTCTGCAGAGTTGATCCAGCATATTCCACTAAGTAT < 41bp 1 0.152140833672211 1 0.427017331123352 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SUPV3L1 ENSG00000156502 CDS Human protein_coding chr10:70962706 chr10:70962725 nonsynonymous SNV 0.996 4 40 hm5C_associated_SNPs_39514 0 0 1 0 1 SUPV3L1 chr10:70962799 5'GT 70962799 Upstream 75bp
chr19 50983465 50983465 1 + T C UCEC 50983456 + 50983436 50983476 41 GGAAGCTGGTGGCTATGTCTCCTCCTTTGTCCCTGCGGTGA GGAAGCTGGTGGCTATGTCTCCTCCTTTGCCCCTGCGGTGA < 41bp 1 0.149215245435384 1 0.34333074092865 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMC10 ENSG00000161671 CDS Human protein_coding chr19:50983456 chr19:50983465 nonsynonymous SNV 0.580 4 30 hm5C_associated_SNPs_39515 0 0 1 0 2 EMC10 chr19:50983368 3'AG 50983368 Downstream 98bp
chr19 50983465 50983465 1 + T C UCEC 50983456 + 50983436 50983476 41 GGAAGCTGGTGGCTATGTCTCCTCCTTTGTCCCTGCGGTGA GGAAGCTGGTGGCTATGTCTCCTCCTTTGCCCCTGCGGTGA < 41bp 1 0.149215245435384 1 0.34333074092865 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMC10 ENSG00000161671 CDS Human protein_coding chr19:50983456 chr19:50983465 nonsynonymous SNV 0.580 4 30 hm5C_associated_SNPs_39515 0 0 1 0 2 EMC10 chr19:50983472 5'GT 50983472 Upstream 8bp
chr14 45620662 45620662 1 + A G UCEC 45620670 + 45620650 45620690 41 AAGGGATATCCCAAATCTAACAAAATATCAGATAATTCTGG AAGGGATATCCCGAATCTAACAAAATATCAGATAATTCTGG < 41bp 1 0.443167667794226 1 0.728365421295166 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FANCM ENSG00000187790 CDS Human protein_coding chr14:45620670 chr14:45620662 synonymous SNV . 0 13 hm5C_associated_SNPs_39517 0 0 1 0 2 FANCM chr14:45620600 3'AG 45620600 Downstream 63bp
chr14 45620662 45620662 1 + A G UCEC 45620670 + 45620650 45620690 41 AAGGGATATCCCAAATCTAACAAAATATCAGATAATTCTGG AAGGGATATCCCGAATCTAACAAAATATCAGATAATTCTGG < 41bp 1 0.443167667794226 1 0.728365421295166 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FANCM ENSG00000187790 CDS Human protein_coding chr14:45620670 chr14:45620662 synonymous SNV . 0 13 hm5C_associated_SNPs_39517 0 0 1 0 2 FANCM chr14:45620731 5'GT 45620731 Upstream 70bp
chr9 35733461 35733461 1 + T G UCEC 35733471 + 35733451 35733491 41 TTATTCTGCCTGAGACACTTCCTCTCACTAAGGTAAGACTC TTATTCTGCCGGAGACACTTCCTCTCACTAAGGTAAGACTC < 41bp 1 0.0441546115907663 1 0.207539737224579 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733471 chr9:35733461 synonymous SNV . 0 11 hm5C_associated_SNPs_39518 0 0 1 0 2 CREB3 chr9:35733393 3'AG 35733393 Downstream 69bp
chr9 35733461 35733461 1 + T G UCEC 35733471 + 35733451 35733491 41 TTATTCTGCCTGAGACACTTCCTCTCACTAAGGTAAGACTC TTATTCTGCCGGAGACACTTCCTCTCACTAAGGTAAGACTC < 41bp 1 0.0441546115907663 1 0.207539737224579 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733471 chr9:35733461 synonymous SNV . 0 11 hm5C_associated_SNPs_39518 0 0 1 0 2 CREB3 chr9:35733482 5'GT 35733482 Upstream 22bp
chr19 54969670 54969670 1 + G A UCEC 54969650 + 54969630 54969670 41 ATGTCTGGCTACCTCGTGGACAAGTTTGCAGATCGGGAGCG ATGTCTGGCTACCTCGTGGACAAGTTTGCAGATCGGGAGCA < 41bp 1 0.411630550777961 1 0.218776881694794 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54969650 chr19:54969670 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_39519 0 0 1 0 1 LENG8 chr19:54969700 5'GT 54969700 Upstream 31bp
chr19 54969670 54969670 1 + G A UCEC 54969680 + 54969660 54969700 41 GATCGGGAGCGCAAGGTCGCCCTCAAGGCCATGATCAAAAC GATCGGGAGCACAAGGTCGCCCTCAAGGCCATGATCAAAAC < 41bp 1 0.12431812035585 1 0.172753095626831 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54969680 chr19:54969670 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_39520 0 0 1 0 1 LENG8 chr19:54969700 5'GT 54969700 Upstream 31bp
chr13 24858308 24858308 1 + G A UCEC 24858291 + 24858271 24858311 41 AGTTTCTTCAGATGGAGGTACTGAGCCCTCTGCCTTAGTGG AGTTTCTTCAGATGGAGGTACTGAGCCCTCTGCCTTAATGG < 41bp 1 0.147419914725411 1 0.193182200193405 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPATA13 ENSG00000182957;ENSG00000273167 CDS Human other chr13:24858291 chr13:24858308 nonsynonymous SNV 0.763 0 38 hm5C_associated_SNPs_39522 0 0 1 0 1 SPATA13 chr13:24858273 3'AG 24858273 Downstream 36bp
chr10 60580151 60580151 1 + C T UCEC 60580149 + 60580129 60580169 41 ATCGATCTTCAGACATTCCTCACTCTCACAGATCAGGATCT ATCGATCTTCAGACATTCCTCATTCTCACAGATCAGGATCT < 41bp 1 0.0302411117407745 1 0.120138823986053 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60580149 chr10:60580151 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_39531 0 0 1 0 2 BICC1 chr10:60580129 3'AG 60580129 Downstream 23bp
chr10 60580151 60580151 1 + C T UCEC 60580149 + 60580129 60580169 41 ATCGATCTTCAGACATTCCTCACTCTCACAGATCAGGATCT ATCGATCTTCAGACATTCCTCATTCTCACAGATCAGGATCT < 41bp 1 0.0302411117407745 1 0.120138823986053 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60580149 chr10:60580151 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_39531 0 0 1 0 2 BICC1 chr10:60580228 5'GT 60580228 Upstream 78bp
chr12 58114267 58114267 1 + C T UCEC 58114286 + 58114266 58114306 41 ACGAGAAACCTCAAGGAGATCTTCTTCAATATCTTGGTAAG ATGAGAAACCTCAAGGAGATCTTCTTCAATATCTTGGTAAG < 41bp 1 0.329730292759288 1 0.0513812005519867 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control OS9 ENSG00000135506 CDS Human protein_coding chr12:58114286 chr12:58114267 nonsynonymous SNV 0.868 4 2 hm5C_associated_SNPs_39532 0 0 1 0 2 OS9 chr12:58114189 3'AG 58114189 Downstream 79bp
chr12 58114267 58114267 1 + C T UCEC 58114286 + 58114266 58114306 41 ACGAGAAACCTCAAGGAGATCTTCTTCAATATCTTGGTAAG ATGAGAAACCTCAAGGAGATCTTCTTCAATATCTTGGTAAG < 41bp 1 0.329730292759288 1 0.0513812005519867 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control OS9 ENSG00000135506 CDS Human protein_coding chr12:58114286 chr12:58114267 nonsynonymous SNV 0.868 4 2 hm5C_associated_SNPs_39532 0 0 1 0 2 OS9 chr12:58114301 5'GT 58114301 Upstream 35bp
chr1 32628007 32628007 1 + G A UCEC 32628006 + 32627986 32628026 41 TCTCGCCTACTCTTCAGCAGCGACTCGGACTTGCTGGCAGA TCTCGCCTACTCTTCAGCAGCAACTCGGACTTGCTGGCAGA < 41bp 1 0.252299344619857 1 0.0755244195461273 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32628006 chr1:32628007 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_39533 0 0 1 0 1 KPNA6 chr1:32627962 3'AG 32627962 Downstream 46bp
chrX 24073098 24073098 1 + G T UCEC 24073094 + 24073074 24073114 41 TCTTTTGGCAACATGGCGGGCGGAGAAGCTGGAGTGACTCT TCTTTTGGCAACATGGCGGGCGGATAAGCTGGAGTGACTCT < 41bp 1 0.459091856506104 1 0.362345695495605 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF2S3 ENSG00000130741 CDS Human protein_coding chrX:24073094 chrX:24073098 stopgain 0.191 1 25 hm5C_associated_SNPs_39536 0 0 1 0 1 EIF2S3 chrX:24073154 5'GT 24073154 Upstream 57bp
chr3 101445472 101445472 1 + G A UCEC 101445461 + 101445441 101445481 41 CAGTGGTCAATTGGTCAGGACAGGGACTACAGAAATTAGGT CAGTGGTCAATTGGTCAGGACAGGGACTACAAAAATTAGGT < 41bp 1 0.383446785655672 1 0.439141929149628 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CEP97 ENSG00000182504 CDS Human protein_coding chr3:101445461 chr3:101445472 synonymous SNV . 0 32 hm5C_associated_SNPs_39537 0 0 1 0 1 CEP97 chr3:101445438 3'AG 101445438 Downstream 35bp
chr2 184023066 184023066 1 + G A UCEC 184023063 + 184023043 184023083 41 TTATCAATCTAAACTGCAGGCTCGGAAAGCCTTAAGCAAAG TTATCAATCTAAACTGCAGGCTCAGAAAGCCTTAAGCAAAG < 41bp 1 0.470724402200907 1 0.15846574306488 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUP35 ENSG00000163002 CDS Human protein_coding chr2:184023063 chr2:184023066 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_39538 0 0 1 1 2 NUP35 chr2:184023011 3'AG 184023011 Downstream 56bp
chr2 184023066 184023066 1 + G A UCEC 184023063 + 184023043 184023083 41 TTATCAATCTAAACTGCAGGCTCGGAAAGCCTTAAGCAAAG TTATCAATCTAAACTGCAGGCTCAGAAAGCCTTAAGCAAAG < 41bp 1 0.470724402200907 1 0.15846574306488 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUP35 ENSG00000163002 CDS Human protein_coding chr2:184023063 chr2:184023066 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_39538 0 0 1 1 2 NUP35 chr2:184023139 5'GT 184023139 Upstream 74bp
chr14 50789382 50789382 1 + T C UCEC 50789391 + 50789371 50789411 41 AAATACAAGATTCAGGCGATCGACGCCACCGACTCTTGTAT AAATACAAGATCCAGGCGATCGACGCCACCGACTCTTGTAT < 41bp 1 0.664384885212911 1 0.547669291496277 experiment 0.671230229574179 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP5S ENSG00000125375 CDS Human protein_coding chr14:50789391 chr14:50789382 synonymous SNV . 0 12 hm5C_associated_SNPs_39539 0 0 1 0 1 ATP5S chr14:50789437 5'GT 50789437 Upstream 56bp
chr14 50789382 50789382 1 + T C UCEC 50789396 + 50789376 50789416 41 CAAGATTCAGGCGATCGACGCCACCGACTCTTGTATCATGA CAAGATCCAGGCGATCGACGCCACCGACTCTTGTATCATGA < 41bp 1 0.0928311689650026 1 0.128198176622391 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP5S ENSG00000125375 CDS Human protein_coding chr14:50789396 chr14:50789382 synonymous SNV . 0 7 hm5C_associated_SNPs_39540 0 0 1 0 1 ATP5S chr14:50789437 5'GT 50789437 Upstream 56bp
chr20 25397763 25397763 1 + G A UCEC 25397762 + 25397742 25397782 41 ATGAAGCAAAGTCAGGTGGACGAAGTGATTTGATACCAACT ATGAAGCAAAGTCAGGTGGACAAAGTGATTTGATACCAACT < 41bp 1 0.266699027501813 1 0.526736557483673 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GINS1 ENSG00000101003 CDS Human protein_coding chr20:25397762 chr20:25397763 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_39541 0 0 1 0 2 GINS1 chr20:25397740 3'AG 25397740 Downstream 24bp
chr20 25397763 25397763 1 + G A UCEC 25397762 + 25397742 25397782 41 ATGAAGCAAAGTCAGGTGGACGAAGTGATTTGATACCAACT ATGAAGCAAAGTCAGGTGGACAAAGTGATTTGATACCAACT < 41bp 1 0.266699027501813 1 0.526736557483673 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GINS1 ENSG00000101003 CDS Human protein_coding chr20:25397762 chr20:25397763 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_39541 0 0 1 0 2 GINS1 chr20:25397838 5'GT 25397838 Upstream 76bp
chr5 56545306 56545306 1 + G A UCEC 56545303 + 56545283 56545323 41 GCCTCGTCTAACCAAACTGACACGAATGCGCACTGATAAGA GCCTCGTCTAACCAAACTGACACAAATGCGCACTGATAAGA < 41bp 1 0.688210039072208 1 0.138661891222 experiment 0.623579921855584 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56545303 chr5:56545306 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_39543 0 0 1 3 2 GPBP1 chr5:56545281 3'AG 56545281 Downstream 26bp
chr5 56545306 56545306 1 + G A UCEC 56545303 + 56545283 56545323 41 GCCTCGTCTAACCAAACTGACACGAATGCGCACTGATAAGA GCCTCGTCTAACCAAACTGACACAAATGCGCACTGATAAGA < 41bp 1 0.688210039072208 1 0.138661891222 experiment 0.623579921855584 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56545303 chr5:56545306 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_39543 0 0 1 3 2 GPBP1 chr5:56545403 5'GT 56545403 Upstream 98bp
chr3 8607253 8607253 1 + T G UCEC 8607252 + 8607232 8607272 41 GAGCCGCTGGTGGACCTCATCTACTTCTGGAAGGATGGTGC GAGCCGCTGGTGGACCTCATCGACTTCTGGAAGGATGGTGC < 41bp 1 0.658162253641933 1 0.775054335594177 experiment 0.683675492716135 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LMCD1 ENSG00000071282 CDS Human protein_coding chr3:8607252 chr3:8607253 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_39544 0 0 1 0 1 LMCD1 chr3:8607333 5'GT 8607333 Upstream 81bp
chrX 151806780 151806780 1 + G A UCEC 151806795 + 151806775 151806815 41 TGCCCGAAGTCGTCCTGAACCTCTTCAACTGGTAAGCGGGC TGCCCAAAGTCGTCCTGAACCTCTTCAACTGGTAAGCGGGC < 41bp 1 0.328802973893208 1 0.272375464439392 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GABRQ ENSG00000147402 CDS Human other chrX:151806795 chrX:151806780 nonsynonymous SNV 0.003 0 6 hm5C_associated_SNPs_39545 0 0 0 0 1 GABRQ chrX:151806805 5'GT 151806805 Upstream 26bp
chr6 21198326 21198326 1 + C A UCEC 21198317 + 21198297 21198337 41 TCCAAGTTTTATGTTGCACACAATCAATTCTATGAGCAGGT TCCAAGTTTTATGTTGCACACAATCAATTATATGAGCAGGT < 41bp 1 0.0395512316454164 1 0.154701203107834 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDKAL1 ENSG00000145996 CDS Human protein_coding chr6:21198317 chr6:21198326 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_39547 0 0 0 0 2 CDKAL1 chr6:21198252 3'AG 21198252 Downstream 75bp
chr6 21198326 21198326 1 + C A UCEC 21198317 + 21198297 21198337 41 TCCAAGTTTTATGTTGCACACAATCAATTCTATGAGCAGGT TCCAAGTTTTATGTTGCACACAATCAATTATATGAGCAGGT < 41bp 1 0.0395512316454164 1 0.154701203107834 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDKAL1 ENSG00000145996 CDS Human protein_coding chr6:21198317 chr6:21198326 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_39547 0 0 0 0 2 CDKAL1 chr6:21198335 5'GT 21198335 Upstream 10bp
chr12 52370282 52370282 1 + C A UCEC 52370279 + 52370259 52370299 41 GAGACTGGACATGGAAGATCCCTCATGTGAGATGTGTCTCT GAGACTGGACATGGAAGATCCCTAATGTGAGATGTGTCTCT < 41bp 1 0.18544727666852 1 0.425498127937317 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52370279 chr12:52370282 stopgain 0.993 1 24 hm5C_associated_SNPs_39548 0 0 1 0 1 ACVR1B chr12:52370359 5'GT 52370359 Upstream 78bp
chr11 34167654 34167654 1 + C T UCEC 34167634 + 34167614 34167654 41 TTTTGATTTTTCTCTAGTGACAAGAAAAGGAAGTTAGAGGC TTTTGATTTTTCTCTAGTGACAAGAAAAGGAAGTTAGAGGT < 41bp 1 0.63126433982535 1 0.324666738510132 experiment 0.7374713203493 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34167634 chr11:34167654 nonsynonymous SNV 0.659 0 41 hm5C_associated_SNPs_39549 0 0 1 0 1 NAT10 chr11:34167631 3'AG 34167631 Downstream 24bp
chr3 112715747 112715747 1 + G T UCEC 112715739 + 112715719 112715759 41 TCTTTTCTACATGCTTATAGCTTGAAGAGAACATTTTTATT TCTTTTCTACATGCTTATAGCTTGAAGATAACATTTTTATT < 41bp 1 0.428130410084956 1 0.199587285518646 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GTPBP8 ENSG00000163607 CDS Human protein_coding chr3:112715739 chr3:112715747 nonsynonymous SNV 0.997 4 29 hm5C_associated_SNPs_39550 0 0 0 0 2 GTPBP8 chr3:112715739 3'AG 112715739 Downstream 9bp
chr3 112715747 112715747 1 + G T UCEC 112715739 + 112715719 112715759 41 TCTTTTCTACATGCTTATAGCTTGAAGAGAACATTTTTATT TCTTTTCTACATGCTTATAGCTTGAAGATAACATTTTTATT < 41bp 1 0.428130410084956 1 0.199587285518646 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GTPBP8 ENSG00000163607 CDS Human protein_coding chr3:112715739 chr3:112715747 nonsynonymous SNV 0.997 4 29 hm5C_associated_SNPs_39550 0 0 0 0 2 GTPBP8 chr3:112715838 5'GT 112715838 Upstream 92bp
chr2 128861533 128861533 1 + G T UCEC 128861524 + 128861504 128861544 41 AGTGAGTTTTTAGCAGAAGACAGTCAAGAGAAATTTTGGAA AGTGAGTTTTTAGCAGAAGACAGTCAAGATAAATTTTGGAA < 41bp 1 0.0642238554336519 1 0.164056748151779 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128861524 chr2:128861533 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_39551 0 0 1 0 2 UGGT1 chr2:128861506 3'AG 128861506 Downstream 28bp
chr2 128861533 128861533 1 + G T UCEC 128861524 + 128861504 128861544 41 AGTGAGTTTTTAGCAGAAGACAGTCAAGAGAAATTTTGGAA AGTGAGTTTTTAGCAGAAGACAGTCAAGATAAATTTTGGAA < 41bp 1 0.0642238554336519 1 0.164056748151779 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128861524 chr2:128861533 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_39551 0 0 1 0 2 UGGT1 chr2:128861588 5'GT 128861588 Upstream 56bp
chr1 183101655 183101655 1 + T G UCEC 183101642 + 183101622 183101662 41 ACTGGCAGGAGAAAATCAAACAGCATTTGAGATTGAAGAGC ACTGGCAGGAGAAAATCAAACAGCATTTGAGATGGAAGAGC < 41bp 1 0.710918116148077 1 0.433112323284149 experiment 0.578163767703845 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183101642 chr1:183101655 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_39553 0 0 1 0 1 LAMC1 chr1:183101672 5'GT 183101672 Upstream 18bp
chr1 183101655 183101655 1 + T G UCEC 183101645 + 183101625 183101665 41 GGCAGGAGAAAATCAAACAGCATTTGAGATTGAAGAGCTTA GGCAGGAGAAAATCAAACAGCATTTGAGATGGAAGAGCTTA < 41bp 1 0.0284555610755198 1 0.0967668890953064 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183101645 chr1:183101655 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_39554 0 0 1 0 1 LAMC1 chr1:183101672 5'GT 183101672 Upstream 18bp
chr2 74682725 74682725 1 + G A UCEC 74682720 + 74682700 74682740 41 GGGGGACAAGTCCTGGGGACCAAGAGGTGAGGCCAAGAGGG GGGGGACAAGTCCTGGGGACCAAGAAGTGAGGCCAAGAGGG < 41bp 1 0.709107247914322 1 0.836267232894897 experiment 0.581785504171356 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control INO80B ENSG00000115274 CDS Human protein_coding chr2:74682720 chr2:74682725 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_39555 0 0 1 0 1 INO80B chr2:74682725 5'GT 74682725 Upstream 1bp
chr7 130020985 130020985 1 + A C UCEC 130020965 + 130020945 130020985 41 GGTGCTCCGAATCTCTGTAGCCGATGAGGCCCAGGTACAGA GGTGCTCCGAATCTCTGTAGCCGATGAGGCCCAGGTACAGC < 41bp 1 0.308270576645131 1 0.121644288301468 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130020965 chr7:130020985 nonsynonymous SNV 0.987 0 41 hm5C_associated_SNPs_39556 0 0 0 0 2 CPA1 chr7:130020939 3'AG 130020939 Downstream 47bp
chr7 130020985 130020985 1 + A C UCEC 130020965 + 130020945 130020985 41 GGTGCTCCGAATCTCTGTAGCCGATGAGGCCCAGGTACAGA GGTGCTCCGAATCTCTGTAGCCGATGAGGCCCAGGTACAGC < 41bp 1 0.308270576645131 1 0.121644288301468 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130020965 chr7:130020985 nonsynonymous SNV 0.987 0 41 hm5C_associated_SNPs_39556 0 0 0 0 2 CPA1 chr7:130021020 5'GT 130021020 Upstream 36bp
chr7 130020985 130020985 1 + A C UCEC 130021005 + 130020985 130021025 41 AAGGTGAAGGAGCTGGAGGACCTGGAGCACCTGCAGGTCAG CAGGTGAAGGAGCTGGAGGACCTGGAGCACCTGCAGGTCAG < 41bp 1 0.383319674449545 1 0.173380672931671 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021005 chr7:130020985 nonsynonymous SNV 0.987 0 1 hm5C_associated_SNPs_39557 0 0 0 0 2 CPA1 chr7:130020939 3'AG 130020939 Downstream 47bp
chr7 130020985 130020985 1 + A C UCEC 130021005 + 130020985 130021025 41 AAGGTGAAGGAGCTGGAGGACCTGGAGCACCTGCAGGTCAG CAGGTGAAGGAGCTGGAGGACCTGGAGCACCTGCAGGTCAG < 41bp 1 0.383319674449545 1 0.173380672931671 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021005 chr7:130020985 nonsynonymous SNV 0.987 0 1 hm5C_associated_SNPs_39557 0 0 0 0 2 CPA1 chr7:130021020 5'GT 130021020 Upstream 36bp
chr22 18894190 18894190 1 + G A UCEC 18894189 + 18894169 18894209 41 CTGGAGATCCAGCACCTCACCGAAAAGAGCCTGTACAACCA CTGGAGATCCAGCACCTCACCAAAAAGAGCCTGTACAACCA < 41bp 1 0.731804883582638 1 0.681673288345337 experiment 0.536390232834724 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DGCR6 ENSG00000183628 CDS Human protein_coding chr22:18894189 chr22:18894190 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_39560 0 0 0 0 1 DGCR6 chr22:18894238 5'GT 18894238 Upstream 49bp
chr1 32622987 32622987 1 + C A UCEC 32623004 + 32622984 32623024 41 TTTCTGATGATTCTGACCTGCAGTTAGCAACCACACAGAAA TTTATGATGATTCTGACCTGCAGTTAGCAACCACACAGAAA < 41bp 1 0.137571587307697 1 0.110078901052475 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32623004 chr1:32622987 nonsynonymous SNV 0.787 4 4 hm5C_associated_SNPs_39561 0 0 1 0 2 KPNA6 chr1:32622947 3'AG 32622947 Downstream 41bp
chr1 32622987 32622987 1 + C A UCEC 32623004 + 32622984 32623024 41 TTTCTGATGATTCTGACCTGCAGTTAGCAACCACACAGAAA TTTATGATGATTCTGACCTGCAGTTAGCAACCACACAGAAA < 41bp 1 0.137571587307697 1 0.110078901052475 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32623004 chr1:32622987 nonsynonymous SNV 0.787 4 4 hm5C_associated_SNPs_39561 0 0 1 0 2 KPNA6 chr1:32623046 5'GT 32623046 Upstream 60bp
chr8 145662242 145662242 1 - G A UCEC 145662226 - 145662206 145662246 41 GCTGCGAAGGCATCACCCCCCTCCACGATGCCCTCAACTGT GCTGTGAAGGCATCACCCCCCTCCACGATGCCCTCAACTGT < 41bp 1 0.602747500824294 1 0.922515511512756 experiment 0.794504998351412 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TONSL ENSG00000160949 CDS Human protein_coding chr8:145662226 chr8:145662242 synonymous SNV . 0 5 hm5C_associated_SNPs_39562 0 0 1 0 1 TONSL chr8:145662303 3'AG 145662303 Downstream 62bp
chr8 1876686 1876686 1 + C T UCEC 1876673 + 1876653 1876693 41 CCCAAAGTCATTGAGTGCTTCAACGTGGAATCTCGCATCCT CCCAAAGTCATTGAGTGCTTCAACGTGGAATCTTGCATCCT < 41bp 1 0.391787775777259 1 0.441111087799072 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1876673 chr8:1876686 nonsynonymous SNV 0.952 3 34 hm5C_associated_SNPs_39564 0 0 0 0 1 ARHGEF10 chr8:1876593 3'AG 1876593 Downstream 94bp
chr12 21598285 21598285 1 + C A UCEC 21598304 + 21598284 21598324 41 TCTAAAATATTGGAAGAATTCGATGTTGAAGAACAATCAAG TATAAAATATTGGAAGAATTCGATGTTGAAGAACAATCAAG < 41bp 1 0.565136069264844 1 0.714026749134064 experiment 0.869727861470311 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PYROXD1 ENSG00000121350 CDS Human protein_coding chr12:21598304 chr12:21598285 nonsynonymous SNV 0.998 4 2 hm5C_associated_SNPs_39565 0 0 0 0 1 PYROXD1 chr12:21598281 3'AG 21598281 Downstream 5bp
chr6 34950943 34950943 1 + C T UCEC 34950926 + 34950906 34950946 41 AAAAGATAACCATGGACTGACTGCCCTAGACACTGTTCGGG AAAAGATAACCATGGACTGACTGCCCTAGACACTGTTTGGG < 41bp 1 0.11507082600149 1 0.197713226079941 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKS1A ENSG00000064999 CDS Human protein_coding chr6:34950926 chr6:34950943 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_39567 0 0 1 0 2 ANKS1A chr6:34950890 3'AG 34950890 Downstream 54bp
chr6 34950943 34950943 1 + C T UCEC 34950926 + 34950906 34950946 41 AAAAGATAACCATGGACTGACTGCCCTAGACACTGTTCGGG AAAAGATAACCATGGACTGACTGCCCTAGACACTGTTTGGG < 41bp 1 0.11507082600149 1 0.197713226079941 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKS1A ENSG00000064999 CDS Human protein_coding chr6:34950926 chr6:34950943 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_39567 0 0 1 0 2 ANKS1A chr6:34950991 5'GT 34950991 Upstream 49bp
chr6 24423247 24423247 1 + G A UCEC 24423252 + 24423232 24423272 41 TGCTTTCATTCCTTGGACGACAGCTAGAAGCTCCATTGCCT TGCTTTCATTCCTTGAACGACAGCTAGAAGCTCCATTGCCT < 41bp 1 0.473370651448612 1 0.0264926552772522 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRS2 ENSG00000124532 CDS Human protein_coding chr6:24423252 chr6:24423247 nonsynonymous SNV 0.995 4 16 hm5C_associated_SNPs_39568 0 0 1 0 2 MRS2 chr6:24423165 3'AG 24423165 Downstream 83bp
chr6 24423247 24423247 1 + G A UCEC 24423252 + 24423232 24423272 41 TGCTTTCATTCCTTGGACGACAGCTAGAAGCTCCATTGCCT TGCTTTCATTCCTTGAACGACAGCTAGAAGCTCCATTGCCT < 41bp 1 0.473370651448612 1 0.0264926552772522 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRS2 ENSG00000124532 CDS Human protein_coding chr6:24423252 chr6:24423247 nonsynonymous SNV 0.995 4 16 hm5C_associated_SNPs_39568 0 0 1 0 2 MRS2 chr6:24423278 5'GT 24423278 Upstream 32bp
chr5 5303772 5303772 1 + G T UCEC 5303760 + 5303740 5303780 41 CCAACCCCTCGGCCAGAGCGCAGCTGCTGCCCGACGCTGTC CCAACCCCTCGGCCAGAGCGCAGCTGCTGCCCTACGCTGTC < 41bp 1 0.520002205891478 1 0.196482330560684 experiment 0.959995588217044 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5303760 chr5:5303772 nonsynonymous SNV 0.001 3 33 hm5C_associated_SNPs_39569 0 0 0 0 1 ADAMTS16 chr5:5303685 3'AG 5303685 Downstream 88bp
chr1 35879605 35879605 1 + T G UCEC 35879615 + 35879595 35879635 41 TAGATAACATTTTTACTGAGCCCTATTCCAGATTTATGATT TAGATAACATGTTTACTGAGCCCTATTCCAGATTTATGATT < 41bp 1 0.0853929876530477 1 0.0428610742092133 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35879615 chr1:35879605 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_39570 0 0 1 0 2 ZMYM4 chr1:35879573 3'AG 35879573 Downstream 33bp
chr1 35879605 35879605 1 + T G UCEC 35879615 + 35879595 35879635 41 TAGATAACATTTTTACTGAGCCCTATTCCAGATTTATGATT TAGATAACATGTTTACTGAGCCCTATTCCAGATTTATGATT < 41bp 1 0.0853929876530477 1 0.0428610742092133 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35879615 chr1:35879605 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_39570 0 0 1 0 2 ZMYM4 chr1:35879684 5'GT 35879684 Upstream 80bp
chr1 35879605 35879605 1 + T G UCEC 35879623 + 35879603 35879643 41 ATTTTTACTGAGCCCTATTCCAGATTTATGATTGAACTTAC ATGTTTACTGAGCCCTATTCCAGATTTATGATTGAACTTAC < 41bp 1 0.316934366773672 1 0.717462301254272 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35879623 chr1:35879605 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_39571 0 0 1 0 2 ZMYM4 chr1:35879573 3'AG 35879573 Downstream 33bp
chr1 35879605 35879605 1 + T G UCEC 35879623 + 35879603 35879643 41 ATTTTTACTGAGCCCTATTCCAGATTTATGATTGAACTTAC ATGTTTACTGAGCCCTATTCCAGATTTATGATTGAACTTAC < 41bp 1 0.316934366773672 1 0.717462301254272 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35879623 chr1:35879605 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_39571 0 0 1 0 2 ZMYM4 chr1:35879684 5'GT 35879684 Upstream 80bp
chr13 28854640 28854640 1 + C A UCEC 28854635 + 28854615 28854655 41 ATTTTATACTCAATTGGATGCTGCTCAAATGAGAAATGATG ATTTTATACTCAATTGGATGCTGCTAAAATGAGAAATGATG < 41bp 1 0.164094723841975 1 0.151957124471664 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAN3 ENSG00000152520 CDS Human protein_coding chr13:28854635 chr13:28854640 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_39572 0 0 1 0 2 PAN3 chr13:28854549 3'AG 28854549 Downstream 92bp
chr13 28854640 28854640 1 + C A UCEC 28854635 + 28854615 28854655 41 ATTTTATACTCAATTGGATGCTGCTCAAATGAGAAATGATG ATTTTATACTCAATTGGATGCTGCTAAAATGAGAAATGATG < 41bp 1 0.164094723841975 1 0.151957124471664 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAN3 ENSG00000152520 CDS Human protein_coding chr13:28854635 chr13:28854640 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_39572 0 0 1 0 2 PAN3 chr13:28854678 5'GT 28854678 Upstream 39bp
chr4 154197185 154197185 1 + G A UCEC 154197184 + 154197164 154197204 41 ACCTGATGGACGTGCTGCAGCGAACTCCAGGCAGCAACGCT ACCTGATGGACGTGCTGCAGCAAACTCCAGGCAGCAACGCT < 41bp 1 0.212388300495757 1 0.07687047123909 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154197184 chr4:154197185 nonsynonymous SNV 0.991 2 22 hm5C_associated_SNPs_39573 0 0 1 0 1 TRIM2 chr4:154197282 5'GT 154197282 Upstream 98bp
chr9 19336788 19336788 1 + G T UCEC 19336770 + 19336750 19336790 41 ATGATGCTAACAATGGGGAGCACACAGTCTTCGTCAGAGAT ATGATGCTAACAATGGGGAGCACACAGTCTTCGTCAGATAT < 41bp 1 0.048598769475088 1 0.205629169940948 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DENND4C ENSG00000137145 CDS Human protein_coding chr9:19336770 chr9:19336788 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_39574 0 0 1 0 1 DENND4C chr9:19336830 5'GT 19336830 Upstream 43bp
chr3 158310363 158310363 1 + C A UCEC 158310369 + 158310349 158310389 41 TGATGGTGAAGATTCTTTGACTGTAAGTTCTTTTTTTTAAG TGATGGTGAAGATTATTTGACTGTAAGTTCTTTTTTTTAAG < 41bp 1 0.592598848886101 1 0.0770722031593323 experiment 0.814802302227798 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MLF1 ENSG00000178053 CDS Human protein_coding chr3:158310369 chr3:158310363 nonsynonymous SNV 0.346 0 15 hm5C_associated_SNPs_39575 0 0 0 0 1 MLF1 chr3:158310370 5'GT 158310370 Upstream 8bp
chr5 156816265 156816265 1 + C T UCEC 156816259 + 156816239 156816279 41 CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTGAC CGGCTGTGCTGTGGCCTGTCCATGTTTGAGGTCATCCTGAC < 41bp 1 0.372786331647843 1 0.560127198696136 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816259 chr5:156816265 synonymous SNV . 0 27 hm5C_associated_SNPs_39576 0 0 1 0 1 CYFIP2 chr5:156816197 3'AG 156816197 Downstream 69bp
chr19 3273915 3273915 1 + G A UCEC 3273912 + 3273892 3273932 41 AGCCTGCGGACAGTGAAAGCCGCGGAGGTAGTTGTCATCTC AGCCTGCGGACAGTGAAAGCCGCAGAGGTAGTTGTCATCTC < 41bp 1 0.783507331743342 1 0.796273648738861 experiment 0.432985336513317 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CELF5 ENSG00000161082 CDS Human protein_coding chr19:3273912 chr19:3273915 nonsynonymous SNV 0.987 3 24 hm5C_associated_SNPs_39577 0 0 0 0 1 CELF5 chr19:3273921 5'GT 3273921 Upstream 7bp
chr9 96026309 96026309 1 + G A UCEC 96026292 + 96026272 96026312 41 TCGACTTGGACGGGGACGCACCCGATGAAATTGCCACGTAT TCGACTTGGACGGGGACGCACCCGATGAAATTGCCACATAT < 41bp 1 0.472734634573604 1 0.454972565174103 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WNK2 ENSG00000165238 CDS Human protein_coding chr9:96026292 chr9:96026309 synonymous SNV . 0 38 hm5C_associated_SNPs_39578 0 0 1 0 1 WNK2 chr9:96026315 5'GT 96026315 Upstream 7bp
chr18 74620345 74620345 1 + G A UCEC 74620335 + 74620315 74620355 41 AGCCTCGATAGATGACAGCACTGTAGACCAGCAGAGCATGC AGCCTCGATAGATGACAGCACTGTAGACCAACAGAGCATGC < 41bp 1 0.483078349196805 1 0.187785714864731 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74620335 chr18:74620345 synonymous SNV . 0 31 hm5C_associated_SNPs_39582 0 0 1 0 1 ZNF236 chr18:74620276 3'AG 74620276 Downstream 70bp
chr6 125550325 125550325 1 + A G UCEC 125550344 + 125550324 125550364 41 GAGATAAAACAAAAACTCGGCATGAACCTGATGAATGAATT GGGATAAAACAAAAACTCGGCATGAACCTGATGAATGAATT < 41bp 1 0.262459614550095 1 0.090606302022934 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPD52L1 ENSG00000111907 CDS Human protein_coding chr6:125550344 chr6:125550325 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_39585 0 0 1 0 2 TPD52L1 chr6:125550264 3'AG 125550264 Downstream 62bp
chr6 125550325 125550325 1 + A G UCEC 125550344 + 125550324 125550364 41 GAGATAAAACAAAAACTCGGCATGAACCTGATGAATGAATT GGGATAAAACAAAAACTCGGCATGAACCTGATGAATGAATT < 41bp 1 0.262459614550095 1 0.090606302022934 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPD52L1 ENSG00000111907 CDS Human protein_coding chr6:125550344 chr6:125550325 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_39585 0 0 1 0 2 TPD52L1 chr6:125550412 5'GT 125550412 Upstream 88bp
chrX 153008772 153008772 1 + C T UCEC 153008774 + 153008754 153008794 41 GACGCGGGCATTGCCCTGCTCTCCATCACCCACCGGCCCTC GACGCGGGCATTGCCCTGTTCTCCATCACCCACCGGCCCTC < 41bp 1 0.782897595105115 1 0.95909595489502 experiment 0.43420480978977 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153008774 chrX:153008772 nonsynonymous SNV 0.963 4 19 hm5C_associated_SNPs_39588 0 0 1 0 2 ABCD1 chrX:153008675 3'AG 153008675 Downstream 98bp
chrX 153008772 153008772 1 + C T UCEC 153008774 + 153008754 153008794 41 GACGCGGGCATTGCCCTGCTCTCCATCACCCACCGGCCCTC GACGCGGGCATTGCCCTGTTCTCCATCACCCACCGGCCCTC < 41bp 1 0.782897595105115 1 0.95909595489502 experiment 0.43420480978977 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153008774 chrX:153008772 nonsynonymous SNV 0.963 4 19 hm5C_associated_SNPs_39588 0 0 1 0 2 ABCD1 chrX:153008800 5'GT 153008800 Upstream 29bp
chr13 61034620 61034620 1 + C T UCEC 61034613 + 61034593 61034633 41 CACCAAGGATGCTGCGATTACAGATGACTGATGGTCATATA CACCAAGGATGCTGCGATTACAGATGATTGATGGTCATATA < 41bp 1 0.679475406367147 1 0.746725261211395 experiment 0.641049187265706 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61034613 chr13:61034620 nonsynonymous SNV 1.000 5 28 hm5C_associated_SNPs_39590 0 0 1 0 1 TDRD3 chr13:61034674 5'GT 61034674 Upstream 55bp
chr19 36128122 36128122 1 + G A UCEC 36128142 + 36128122 36128162 41 GCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCCAAGGTGAT ACCTTCAGCCGCTTCCCATCCTTCCTTAAGGCCAAGGTGAT < 41bp 1 0.173881307888589 1 0.47196552157402 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36128142 chr19:36128122 nonsynonymous SNV 0.997 1 1 hm5C_associated_SNPs_39591 0 0 1 0 1 RBM42 chr19:36128060 3'AG 36128060 Downstream 63bp
chr13 111155785 111155785 1 + C T UCEC 111155778 + 111155758 111155798 41 GAACACTGGACCCACTGGGGCGGTGGGCGACAGAGGCCCCA GAACACTGGACCCACTGGGGCGGTGGGTGACAGAGGCCCCA < 41bp 1 0.216525757033458 1 0.76112699508667 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111155778 chr13:111155785 synonymous SNV . 0 28 hm5C_associated_SNPs_39592 0 0 0 0 2 COL4A2 chr13:111155730 3'AG 111155730 Downstream 56bp
chr13 111155785 111155785 1 + C T UCEC 111155778 + 111155758 111155798 41 GAACACTGGACCCACTGGGGCGGTGGGCGACAGAGGCCCCA GAACACTGGACCCACTGGGGCGGTGGGTGACAGAGGCCCCA < 41bp 1 0.216525757033458 1 0.76112699508667 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111155778 chr13:111155785 synonymous SNV . 0 28 hm5C_associated_SNPs_39592 0 0 0 0 2 COL4A2 chr13:111155828 5'GT 111155828 Upstream 44bp
chr2 89028800 89028800 1 + G A UCEC 89028799 + 89028779 89028819 41 TTCCCTGTCCTCCGCAGGCCCGCCAGCTCATCCTGCAGTAT TTCCCTGTCCTCCGCAGGCCCACCAGCTCATCCTGCAGTAT < 41bp 1 0.729414196958037 1 0.104578226804733 experiment 0.541171606083926 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPIA ENSG00000153574 CDS Human protein_coding chr2:89028799 chr2:89028800 nonsynonymous SNV 0.812 2 22 hm5C_associated_SNPs_39593 0 0 1 0 2 RPIA chr2:89028796 3'AG 89028796 Downstream 5bp
chr2 89028800 89028800 1 + G A UCEC 89028799 + 89028779 89028819 41 TTCCCTGTCCTCCGCAGGCCCGCCAGCTCATCCTGCAGTAT TTCCCTGTCCTCCGCAGGCCCACCAGCTCATCCTGCAGTAT < 41bp 1 0.729414196958037 1 0.104578226804733 experiment 0.541171606083926 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPIA ENSG00000153574 CDS Human protein_coding chr2:89028799 chr2:89028800 nonsynonymous SNV 0.812 2 22 hm5C_associated_SNPs_39593 0 0 1 0 2 RPIA chr2:89028855 5'GT 89028855 Upstream 56bp
chr19 45493777 45493777 1 + C T UCEC 45493765 + 45493745 45493785 41 TACATCCTGGACAACGAGACCAACTTCGTGGTCCAGGTCAG TACATCCTGGACAACGAGACCAACTTCGTGGTTCAGGTCAG < 41bp 1 0.357298014438246 1 0.0869581401348114 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45493765 chr19:45493777 synonymous SNV . 0 33 hm5C_associated_SNPs_39595 0 0 1 0 1 CLPTM1 chr19:45493843 5'GT 45493843 Upstream 67bp
chr10 93768929 93768929 1 + C T UCEC 93768927 + 93768907 93768947 41 TGCTCTAGAGAATATCTCAACCCGTTGCATTACACTGGACC TGCTCTAGAGAATATCTCAACCTGTTGCATTACACTGGACC < 41bp 1 0.070428598345277 1 0.0910655856132507 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93768927 chr10:93768929 nonsynonymous SNV 0.950 5 23 hm5C_associated_SNPs_39596 0 0 1 0 1 BTAF1 chr10:93768965 5'GT 93768965 Upstream 37bp
chr17 43220897 43220897 1 + G A UCEC 43220912 + 43220892 43220932 41 TCGTCGTCCAGTGGCTCTTCCGAATGTTTCGGACCCAAAAG TCGTCATCCAGTGGCTCTTCCGAATGTTTCGGACCCAAAAG < 41bp 1 0.404713514765061 1 0.801491856575012 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43220912 chr17:43220897 nonsynonymous SNV 0.992 0 6 hm5C_associated_SNPs_39597 0 0 1 0 1 ACBD4 chr17:43220810 3'AG 43220810 Downstream 88bp
chr7 77214872 77214872 1 + G A UCEC 77214877 + 77214857 77214897 41 TAGATCATTGTAATGGCCTGCCGAGAATTTGAGATGGGAAG TAGATCATTGTAATGACCTGCCGAGAATTTGAGATGGGAAG < 41bp 1 0.11512021515674 1 0.703410983085632 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77214877 chr7:77214872 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_39598 0 0 1 1 1 PTPN12 chr7:77214860 3'AG 77214860 Downstream 13bp
chr7 77214872 77214872 1 + G A UCEC 77214878 + 77214858 77214898 41 AGATCATTGTAATGGCCTGCCGAGAATTTGAGATGGGAAGG AGATCATTGTAATGACCTGCCGAGAATTTGAGATGGGAAGG < 41bp 1 0.791870860121156 1 0.766907930374146 experiment 0.416258279757688 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77214878 chr7:77214872 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_39599 0 0 1 1 1 PTPN12 chr7:77214860 3'AG 77214860 Downstream 13bp
chr19 14561827 14561827 1 + C T UCEC 14561839 + 14561819 14561859 41 GAAGAGCTCGCTGCGGCCTCCTCCGCTGCCTTCAGCACCCG GAAGAGCTTGCTGCGGCCTCCTCCGCTGCCTTCAGCACCCG < 41bp 1 0.652946103420397 1 0.418331801891327 experiment 0.694107793159205 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14561839 chr19:14561827 synonymous SNV . 0 9 hm5C_associated_SNPs_39602 0 0 1 0 1 PKN1 chr19:14561921 5'GT 14561921 Upstream 95bp
chr17 77755539 77755539 1 + C T UCEC 77755519 + 77755499 77755539 41 CATGAGAAGGAGGTGCAGAACCGGAAGAGAGGCAAGAGGCC CATGAGAAGGAGGTGCAGAACCGGAAGAGAGGCAAGAGGCT < 41bp 1 0.657601539501355 1 0.417564511299133 experiment 0.68479692099729 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755519 chr17:77755539 nonsynonymous SNV 0.852 4 41 hm5C_associated_SNPs_39603 0 0 1 0 2 CBX2 chr17:77755495 3'AG 77755495 Downstream 45bp
chr17 77755539 77755539 1 + C T UCEC 77755519 + 77755499 77755539 41 CATGAGAAGGAGGTGCAGAACCGGAAGAGAGGCAAGAGGCC CATGAGAAGGAGGTGCAGAACCGGAAGAGAGGCAAGAGGCT < 41bp 1 0.657601539501355 1 0.417564511299133 experiment 0.68479692099729 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755519 chr17:77755539 nonsynonymous SNV 0.852 4 41 hm5C_associated_SNPs_39603 0 0 1 0 2 CBX2 chr17:77755600 5'GT 77755600 Upstream 62bp
chr17 77755539 77755539 1 + C T UCEC 77755547 + 77755527 77755567 41 GAGGCAAGAGGCCGAGAGGCCGGCCAAGGAAGCTCACTGCC GAGGCAAGAGGCTGAGAGGCCGGCCAAGGAAGCTCACTGCC < 41bp 1 0.42353528099482 1 0.240433722734451 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755547 chr17:77755539 nonsynonymous SNV 0.852 4 13 hm5C_associated_SNPs_39604 0 0 1 0 2 CBX2 chr17:77755495 3'AG 77755495 Downstream 45bp
chr17 77755539 77755539 1 + C T UCEC 77755547 + 77755527 77755567 41 GAGGCAAGAGGCCGAGAGGCCGGCCAAGGAAGCTCACTGCC GAGGCAAGAGGCTGAGAGGCCGGCCAAGGAAGCTCACTGCC < 41bp 1 0.42353528099482 1 0.240433722734451 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755547 chr17:77755539 nonsynonymous SNV 0.852 4 13 hm5C_associated_SNPs_39604 0 0 1 0 2 CBX2 chr17:77755600 5'GT 77755600 Upstream 62bp
chr3 32493951 32493951 1 + T C UCEC 32493943 + 32493923 32493963 41 ATATGGCTGTCCTATAAGATCTCGTGTGTAACCCAGTCCAC ATATGGCTGTCCTATAAGATCTCGTGTGCAACCCAGTCCAC < 41bp 1 0.786378713126882 1 0.131852269172668 experiment 0.427242573746236 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32493943 chr3:32493951 nonsynonymous SNV 0.252 0 29 hm5C_associated_SNPs_39607 0 0 0 0 2 CMTM7 chr3:32493884 3'AG 32493884 Downstream 68bp
chr3 32493951 32493951 1 + T C UCEC 32493943 + 32493923 32493963 41 ATATGGCTGTCCTATAAGATCTCGTGTGTAACCCAGTCCAC ATATGGCTGTCCTATAAGATCTCGTGTGCAACCCAGTCCAC < 41bp 1 0.786378713126882 1 0.131852269172668 experiment 0.427242573746236 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32493943 chr3:32493951 nonsynonymous SNV 0.252 0 29 hm5C_associated_SNPs_39607 0 0 0 0 2 CMTM7 chr3:32493965 5'GT 32493965 Upstream 15bp
chr11 610284 610284 1 + C T UCEC 610293 + 610273 610313 41 CAGGTGTTCTCCGAGCTGCCCTTTCCCAGTCACGTGCTTCC CAGGTGTTCTCTGAGCTGCCCTTTCCCAGTCACGTGCTTCC < 41bp 1 0.0226503444029708 1 0.0263752639293671 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:610293 chr11:610284 synonymous SNV . 0 12 hm5C_associated_SNPs_39609 0 0 1 0 2 PHRF1 chr11:610196 3'AG 610196 Downstream 89bp
chr11 610284 610284 1 + C T UCEC 610293 + 610273 610313 41 CAGGTGTTCTCCGAGCTGCCCTTTCCCAGTCACGTGCTTCC CAGGTGTTCTCTGAGCTGCCCTTTCCCAGTCACGTGCTTCC < 41bp 1 0.0226503444029708 1 0.0263752639293671 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:610293 chr11:610284 synonymous SNV . 0 12 hm5C_associated_SNPs_39609 0 0 1 0 2 PHRF1 chr11:610347 5'GT 610347 Upstream 64bp
chr9 137021680 137021680 1 + C T UCEC 137021694 + 137021674 137021714 41 TTCAGACGAAAGAGATTGTACAGAAACTACAAGGCCACACA TTCAGATGAAAGAGATTGTACAGAAACTACAAGGCCACACA < 41bp 1 0.635395205534742 1 0.461909085512161 experiment 0.729209588930516 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR5 ENSG00000196363 CDS Human protein_coding chr9:137021694 chr9:137021680 nonsynonymous SNV 0.951 4 7 hm5C_associated_SNPs_39610 0 0 1 0 2 WDR5 chr9:137021628 3'AG 137021628 Downstream 53bp
chr9 137021680 137021680 1 + C T UCEC 137021694 + 137021674 137021714 41 TTCAGACGAAAGAGATTGTACAGAAACTACAAGGCCACACA TTCAGATGAAAGAGATTGTACAGAAACTACAAGGCCACACA < 41bp 1 0.635395205534742 1 0.461909085512161 experiment 0.729209588930516 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR5 ENSG00000196363 CDS Human protein_coding chr9:137021694 chr9:137021680 nonsynonymous SNV 0.951 4 7 hm5C_associated_SNPs_39610 0 0 1 0 2 WDR5 chr9:137021715 5'GT 137021715 Upstream 36bp
chr1 32622991 32622991 1 + T C UCEC 32623004 + 32622984 32623024 41 TTTCTGATGATTCTGACCTGCAGTTAGCAACCACACAGAAA TTTCTGACGATTCTGACCTGCAGTTAGCAACCACACAGAAA < 41bp 1 0.12849483976853 1 0.114109456539154 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32623004 chr1:32622991 synonymous SNV . 0 8 hm5C_associated_SNPs_39615 0 0 1 0 2 KPNA6 chr1:32622947 3'AG 32622947 Downstream 45bp
chr1 32622991 32622991 1 + T C UCEC 32623004 + 32622984 32623024 41 TTTCTGATGATTCTGACCTGCAGTTAGCAACCACACAGAAA TTTCTGACGATTCTGACCTGCAGTTAGCAACCACACAGAAA < 41bp 1 0.12849483976853 1 0.114109456539154 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32623004 chr1:32622991 synonymous SNV . 0 8 hm5C_associated_SNPs_39615 0 0 1 0 2 KPNA6 chr1:32623046 5'GT 32623046 Upstream 56bp
chr19 18053554 18053554 1 + C T UCEC 18053574 + 18053554 18053594 41 CGGCAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCC TGGCAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCC < 41bp 1 0.383120927226189 1 0.0806451439857483 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18053574 chr19:18053554 synonymous SNV . 0 1 hm5C_associated_SNPs_39616 0 0 1 0 1 CCDC124 chr19:18053465 3'AG 18053465 Downstream 90bp
chr16 457490 457490 1 + G A UCEC 457472 + 457452 457492 41 GGCCGGCGCTGCCTCCCTCTCTCTATGGACGTCCGAGCGCC GGCCGGCGCTGCCTCCCTCTCTCTATGGACGTCCGAGCACC < 41bp 1 0.787376545043375 1 0.949205636978149 experiment 0.425246909913251 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout DECR2 ENSG00000242612 CDS Human protein_coding chr16:457472 chr16:457490 synonymous SNV . 0 39 hm5C_associated_SNPs_39617 0 0 1 0 2 DECR2 chr16:457425 3'AG 457425 Downstream 66bp
chr16 457490 457490 1 + G A UCEC 457472 + 457452 457492 41 GGCCGGCGCTGCCTCCCTCTCTCTATGGACGTCCGAGCGCC GGCCGGCGCTGCCTCCCTCTCTCTATGGACGTCCGAGCACC < 41bp 1 0.787376545043375 1 0.949205636978149 experiment 0.425246909913251 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout DECR2 ENSG00000242612 CDS Human protein_coding chr16:457472 chr16:457490 synonymous SNV . 0 39 hm5C_associated_SNPs_39617 0 0 1 0 2 DECR2 chr16:457560 5'GT 457560 Upstream 71bp
chr4 144460028 144460028 1 + G A UCEC 144460033 + 144460013 144460053 41 TGGCATCAATCTTGCGACTGCTGATGTAGTAATTTTGTATG TGGCATCAATCTTGCAACTGCTGATGTAGTAATTTTGTATG < 41bp 1 0.277972665535193 1 0.157326400279999 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA5 ENSG00000153147 CDS Human protein_coding chr4:144460033 chr4:144460028 synonymous SNV . 0 16 hm5C_associated_SNPs_39618 0 0 1 0 2 SMARCA5 chr4:144459939 3'AG 144459939 Downstream 90bp
chr4 144460028 144460028 1 + G A UCEC 144460033 + 144460013 144460053 41 TGGCATCAATCTTGCGACTGCTGATGTAGTAATTTTGTATG TGGCATCAATCTTGCAACTGCTGATGTAGTAATTTTGTATG < 41bp 1 0.277972665535193 1 0.157326400279999 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA5 ENSG00000153147 CDS Human protein_coding chr4:144460033 chr4:144460028 synonymous SNV . 0 16 hm5C_associated_SNPs_39618 0 0 1 0 2 SMARCA5 chr4:144460091 5'GT 144460091 Upstream 64bp
chr1 44436769 44436769 1 + T C UCEC 44436760 + 44436740 44436780 41 CTTCGTGCTTCGTCAACGTTCTGTGGCCTTGGAGCTCTGTG CTTCGTGCTTCGTCAACGTTCTGTGGCCTCGGAGCTCTGTG < 41bp 1 0.49296653424386 1 0.186415910720825 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPH2 ENSG00000132768 CDS Human protein_coding chr1:44436760 chr1:44436769 nonsynonymous SNV 0.778 2 30 hm5C_associated_SNPs_39619 0 0 1 0 1 DPH2 chr1:44436861 5'GT 44436861 Upstream 93bp
chr3 49568291 49568291 1 + C T UCEC 49568306 + 49568286 49568326 41 CCACACCCTGGAGGGCCTCCCCCTTGACACTGATAAGGGTG CCACATCCTGGAGGGCCTCCCCCTTGACACTGATAAGGGTG < 41bp 1 0.208463671085644 1 0.284194052219391 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DAG1 ENSG00000173402 CDS Human protein_coding chr3:49568306 chr3:49568291 nonsynonymous SNV 0.074 1 6 hm5C_associated_SNPs_39620 0 0 1 0 1 DAG1 chr3:49568230 3'AG 49568230 Downstream 62bp
chr17 4856575 4856575 1 + C T UCEC 4856570 + 4856550 4856590 41 CAAACTCACCCTTCCAGAAACTAAGCGTTGTGGATCAAGAA CAAACTCACCCTTCCAGAAACTAAGTGTTGTGGATCAAGAA < 41bp 1 0.204493093070348 1 0.183000952005386 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4856570 chr17:4856575 synonymous SNV . 0 26 hm5C_associated_SNPs_39622 1 0 1 0 1 ENO3 chr17:4856567 3'AG 4856567 Downstream 9bp
chr19 7620175 7620175 1 + G A UCEC 7620161 + 7620141 7620181 41 CTCTACGAGAAGGTTTTCTCCAGGCGCGCGGACCGGCACAG CTCTACGAGAAGGTTTTCTCCAGGCGCGCGGACCAGCACAG < 41bp 1 0.618410100672495 1 0.910398483276367 experiment 0.763179798655009 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620161 chr19:7620175 nonsynonymous SNV 0.992 0 35 hm5C_associated_SNPs_39624 0 0 1 1 2 PNPLA6 chr19:7620135 3'AG 7620135 Downstream 41bp
chr19 7620175 7620175 1 + G A UCEC 7620161 + 7620141 7620181 41 CTCTACGAGAAGGTTTTCTCCAGGCGCGCGGACCGGCACAG CTCTACGAGAAGGTTTTCTCCAGGCGCGCGGACCAGCACAG < 41bp 1 0.618410100672495 1 0.910398483276367 experiment 0.763179798655009 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620161 chr19:7620175 nonsynonymous SNV 0.992 0 35 hm5C_associated_SNPs_39624 0 0 1 1 2 PNPLA6 chr19:7620253 5'GT 7620253 Upstream 79bp
chr14 23070610 23070610 1 + G A UCEC 23070600 + 23070580 23070620 41 GCTGGCTGAGTAGCTGGCTGCCCACGTGGCGCCCCACTTCC GCTGGCTGAGTAGCTGGCTGCCCACGTGGCACCCCACTTCC < 41bp 1 0.333307773552552 1 0.166586220264435 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23070600 chr14:23070610 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_39627 0 0 1 0 1 ABHD4 chr14:23070572 3'AG 23070572 Downstream 39bp
chr8 107752698 107752698 1 + T C UCEC 107752684 + 107752664 107752704 41 CGAACAATGACAGGTTTAGACACCCCAGTGCTGATGGTGAT CGAACAATGACAGGTTTAGACACCCCAGTGCTGACGGTGAT < 41bp 1 0.365537293719194 1 0.115660101175308 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107752684 chr8:107752698 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_39628 0 0 1 0 1 OXR1 chr8:107752723 5'GT 107752723 Upstream 26bp
chr17 46128928 46128928 1 + G A UCEC 46128909 + 46128889 46128929 41 GACAACGGGGTGCGAGAAAGCGAAACGGAGCAGGGATTCGG GACAACGGGGTGCGAGAAAGCGAAACGGAGCAGGGATTCAG < 41bp 1 0.774855109602905 1 0.734620213508606 experiment 0.450289780794189 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128909 chr17:46128928 nonsynonymous SNV 0.998 0 40 hm5C_associated_SNPs_39629 0 0 1 0 1 NFE2L1 chr17:46128990 5'GT 46128990 Upstream 63bp
chr17 46128928 46128928 1 + G A UCEC 46128914 + 46128894 46128934 41 CGGGGTGCGAGAAAGCGAAACGGAGCAGGGATTCGGTGAAG CGGGGTGCGAGAAAGCGAAACGGAGCAGGGATTCAGTGAAG < 41bp 1 0.624889987863445 1 0.840571999549866 experiment 0.750220024273111 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128914 chr17:46128928 nonsynonymous SNV 0.998 0 35 hm5C_associated_SNPs_39630 0 0 1 0 1 NFE2L1 chr17:46128990 5'GT 46128990 Upstream 63bp
chr17 46128928 46128928 1 + G A UCEC 46128919 + 46128899 46128939 41 TGCGAGAAAGCGAAACGGAGCAGGGATTCGGTGAAGATTTG TGCGAGAAAGCGAAACGGAGCAGGGATTCAGTGAAGATTTG < 41bp 1 0.672398569178623 1 0.643336415290833 experiment 0.655202861642755 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128919 chr17:46128928 nonsynonymous SNV 0.998 0 30 hm5C_associated_SNPs_39631 0 0 1 0 1 NFE2L1 chr17:46128990 5'GT 46128990 Upstream 63bp
chr17 46128928 46128928 1 + G A UCEC 46128927 + 46128907 46128947 41 AGCGAAACGGAGCAGGGATTCGGTGAAGATTTGGAGGATTT AGCGAAACGGAGCAGGGATTCAGTGAAGATTTGGAGGATTT < 41bp 1 0.563575551276599 1 0.430111169815063 experiment 0.872848897446801 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128927 chr17:46128928 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_39632 0 0 1 0 1 NFE2L1 chr17:46128990 5'GT 46128990 Upstream 63bp
chr13 99047561 99047561 1 + G A UCEC 99047580 + 99047560 99047600 41 CGAAGGTTTCCGCCGGGGAGCCGGGGTCGCACCCGAGCCCT CAAAGGTTTCCGCCGGGGAGCCGGGGTCGCACCCGAGCCCT < 41bp 1 0.701247918043495 1 0.75805127620697 experiment 0.597504163913009 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99047580 chr13:99047561 synonymous SNV . 0 2 hm5C_associated_SNPs_39633 0 0 0 0 1 FARP1 chr13:99047481 3'AG 99047481 Downstream 81bp
chr6 142519615 142519615 1 + C T UCEC 142519603 + 142519583 142519623 41 AGAAAATGAAGATGCTGGAGCAGCCTCTCTGCCCACTCAGC AGAAAATGAAGATGCTGGAGCAGCCTCTCTGCTCACTCAGC < 41bp 1 0.31438383629903 1 0.317446649074554 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VTA1 ENSG00000009844 CDS Human protein_coding chr6:142519603 chr6:142519615 nonsynonymous SNV 1.000 0 33 hm5C_associated_SNPs_39635 0 0 1 1 1 VTA1 chr6:142519576 3'AG 142519576 Downstream 40bp
chr17 78172329 78172329 1 + G A UCEC 78172335 + 78172315 78172355 41 CATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGCGGACC CATCTTCATCCACCAGGTCACCCCGGGCTCGGCGGCGGACC < 41bp 1 0.335819059746066 1 0.0651576817035675 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172335 chr17:78172329 nonsynonymous SNV 0.987 2 15 hm5C_associated_SNPs_39636 0 0 0 0 1 CARD14 chr17:78172390 5'GT 78172390 Upstream 62bp
chr17 78172329 78172329 1 + G A UCEC 78172336 + 78172316 78172356 41 ATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGCGGACCA ATCTTCATCCACCAGGTCACCCCGGGCTCGGCGGCGGACCA < 41bp 1 0.490407741318118 1 0.592187881469727 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172336 chr17:78172329 nonsynonymous SNV 0.987 2 14 hm5C_associated_SNPs_39637 0 0 0 0 1 CARD14 chr17:78172390 5'GT 78172390 Upstream 62bp
chr5 72185767 72185767 1 + C T UCEC 72185770 + 72185750 72185790 41 TAGCAGATTCAGTAGGACATCATTTAAACAAACCAGTAAGT TAGCAGATTCAGTAGGATATCATTTAAACAAACCAGTAAGT < 41bp 1 0.106595795421514 1 0.124539881944656 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72185770 chr5:72185767 nonsynonymous SNV 0.999 2 18 hm5C_associated_SNPs_39638 0 0 1 0 1 TNPO1 chr5:72185784 5'GT 72185784 Upstream 18bp
chr5 72185767 72185767 1 + C T UCEC 72185778 + 72185758 72185798 41 TCAGTAGGACATCATTTAAACAAACCAGTAAGTATCTGTTA TCAGTAGGATATCATTTAAACAAACCAGTAAGTATCTGTTA < 41bp 1 0.200611658858674 1 0.0978406965732574 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72185778 chr5:72185767 nonsynonymous SNV 0.999 2 10 hm5C_associated_SNPs_39639 0 0 1 0 1 TNPO1 chr5:72185784 5'GT 72185784 Upstream 18bp
chr5 72185767 72185767 1 + C T UCEC 72185782 + 72185762 72185802 41 TAGGACATCATTTAAACAAACCAGTAAGTATCTGTTAAGAA TAGGATATCATTTAAACAAACCAGTAAGTATCTGTTAAGAA < 41bp 1 0.15243616568662 1 0.116260200738907 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72185782 chr5:72185767 nonsynonymous SNV 0.999 2 6 hm5C_associated_SNPs_39640 0 0 1 0 1 TNPO1 chr5:72185784 5'GT 72185784 Upstream 18bp
chr5 72185767 72185767 1 + C T UCEC 72185783 + 72185763 72185803 41 AGGACATCATTTAAACAAACCAGTAAGTATCTGTTAAGAAC AGGATATCATTTAAACAAACCAGTAAGTATCTGTTAAGAAC < 41bp 1 0.321012528069325 1 0.124424010515213 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72185783 chr5:72185767 nonsynonymous SNV 0.999 2 5 hm5C_associated_SNPs_39641 0 0 1 0 1 TNPO1 chr5:72185784 5'GT 72185784 Upstream 18bp
chr19 42853741 42853741 1 + C T UCEC 42853746 + 42853726 42853766 41 TTCCCTCTGCCTGGGCGGGACCACAAGTATGCAGTAGAGAT TTCCCTCTGCCTGGGTGGGACCACAAGTATGCAGTAGAGAT < 41bp 1 0.12425742252957 1 0.220310598611832 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42853746 chr19:42853741 nonsynonymous SNV 0.141 3 16 hm5C_associated_SNPs_39642 0 0 0 0 1 MEGF8 chr19:42853651 3'AG 42853651 Downstream 91bp
chr12 123102909 123102909 1 + C T UCEC 123102893 + 123102873 123102913 41 TGGACTTGTTTTCACAGGTTCCCTACTTCAGCAAAGCGTGG TGGACTTGTTTTCACAGGTTCCCTACTTCAGCAAAGTGTGG < 41bp 1 0.0572351845497601 1 0.032362312078476 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123102893 chr12:123102909 nonsynonymous SNV 0.971 1 37 hm5C_associated_SNPs_39643 0 0 1 0 2 KNTC1 chr12:123102890 3'AG 123102890 Downstream 20bp
chr12 123102909 123102909 1 + C T UCEC 123102893 + 123102873 123102913 41 TGGACTTGTTTTCACAGGTTCCCTACTTCAGCAAAGCGTGG TGGACTTGTTTTCACAGGTTCCCTACTTCAGCAAAGTGTGG < 41bp 1 0.0572351845497601 1 0.032362312078476 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123102893 chr12:123102909 nonsynonymous SNV 0.971 1 37 hm5C_associated_SNPs_39643 0 0 1 0 2 KNTC1 chr12:123102944 5'GT 123102944 Upstream 36bp
chrX 150565804 150565804 1 + G A UCEC 150565821 + 150565801 150565841 41 GGCGCTGAACGCACTGCAGCCTCCTGAGTTCAGGTAGCCCT GGCACTGAACGCACTGCAGCCTCCTGAGTTCAGGTAGCCCT < 41bp 1 0.774632675219212 1 0.345600485801697 experiment 0.450734649561577 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VMA21 ENSG00000160131 CDS Human protein_coding chrX:150565821 chrX:150565804 synonymous SNV . 0 4 hm5C_associated_SNPs_39644 0 0 1 0 1 VMA21 chrX:150565833 5'GT 150565833 Upstream 30bp
chr13 113907464 113907464 1 + G A UCEC 113907465 + 113907445 113907485 41 GTGGTCGAAAACTTCAGTGGCAAACTACTTTGGGACATGCT GTGGTCGAAAACTTCAGTGACAAACTACTTTGGGACATGCT < 41bp 1 0.0732695254395524 1 0.140187948942184 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUL4A ENSG00000139842 CDS Human protein_coding chr13:113907465 chr13:113907464 stopgain 0.374 1 20 hm5C_associated_SNPs_39646 0 0 1 0 2 CUL4A chr13:113907396 3'AG 113907396 Downstream 69bp
chr13 113907464 113907464 1 + G A UCEC 113907465 + 113907445 113907485 41 GTGGTCGAAAACTTCAGTGGCAAACTACTTTGGGACATGCT GTGGTCGAAAACTTCAGTGACAAACTACTTTGGGACATGCT < 41bp 1 0.0732695254395524 1 0.140187948942184 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUL4A ENSG00000139842 CDS Human protein_coding chr13:113907465 chr13:113907464 stopgain 0.374 1 20 hm5C_associated_SNPs_39646 0 0 1 0 2 CUL4A chr13:113907509 5'GT 113907509 Upstream 46bp
chr2 11312072 11312072 1 + G A UCEC 11312065 + 11312045 11312085 41 AAACAGAATCTATGTACTTTCATCAGCGCGGCCAGTAAGTT AAACAGAATCTATGTACTTTCATCAGCACGGCCAGTAAGTT < 41bp 1 0.543262275770798 1 0.179821044206619 experiment 0.913475448458405 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11312065 chr2:11312072 nonsynonymous SNV 0.474 1 28 hm5C_associated_SNPs_39647 0 0 0 0 2 PQLC3 chr2:11312051 3'AG 11312051 Downstream 22bp
chr2 11312072 11312072 1 + G A UCEC 11312065 + 11312045 11312085 41 AAACAGAATCTATGTACTTTCATCAGCGCGGCCAGTAAGTT AAACAGAATCTATGTACTTTCATCAGCACGGCCAGTAAGTT < 41bp 1 0.543262275770798 1 0.179821044206619 experiment 0.913475448458405 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11312065 chr2:11312072 nonsynonymous SNV 0.474 1 28 hm5C_associated_SNPs_39647 0 0 0 0 2 PQLC3 chr2:11312171 5'GT 11312171 Upstream 100bp
chr2 11312073 11312073 1 + C T UCEC 11312065 + 11312045 11312085 41 AAACAGAATCTATGTACTTTCATCAGCGCGGCCAGTAAGTT AAACAGAATCTATGTACTTTCATCAGCGTGGCCAGTAAGTT < 41bp 1 0.562025131667105 1 0.0569708645343781 experiment 0.87594973666579 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11312065 chr2:11312073 nonsynonymous SNV 0.494 0 29 hm5C_associated_SNPs_39650 0 0 0 0 2 PQLC3 chr2:11312051 3'AG 11312051 Downstream 23bp
chr2 11312073 11312073 1 + C T UCEC 11312065 + 11312045 11312085 41 AAACAGAATCTATGTACTTTCATCAGCGCGGCCAGTAAGTT AAACAGAATCTATGTACTTTCATCAGCGTGGCCAGTAAGTT < 41bp 1 0.562025131667105 1 0.0569708645343781 experiment 0.87594973666579 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11312065 chr2:11312073 nonsynonymous SNV 0.494 0 29 hm5C_associated_SNPs_39650 0 0 0 0 2 PQLC3 chr2:11312171 5'GT 11312171 Upstream 99bp
chr1 10425623 10425623 1 + G A UCEC 10425628 + 10425608 10425648 41 ACTACCTTTGAAAGCGCCATCACACCTAGCGAGAGCAGTGG ACTACCTTTGAAAGCACCATCACACCTAGCGAGAGCAGTGG < 41bp 1 0.0923720813924609 1 0.154969453811646 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10425628 chr1:10425623 nonsynonymous SNV 0.995 3 16 hm5C_associated_SNPs_39651 0 0 0 0 1 KIF1B chr1:10425706 5'GT 10425706 Upstream 84bp
chr16 29848067 29848067 1 + C T UCEC 29848064 + 29848044 29848084 41 CAGCCCTGCACCTCCGGGCTCGGCGGAACTTCCGGGACTTC CAGCCCTGCACCTCCGGGCTCGGTGGAACTTCCGGGACTTC < 41bp 1 0.491880474565016 1 0.47686979174614 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29848064 chr16:29848067 nonsynonymous SNV 0.669 2 24 hm5C_associated_SNPs_39654 0 0 1 0 1 MVP chr16:29848043 3'AG 29848043 Downstream 25bp
chr7 21934380 21934380 1 + G A UCEC 21934397 + 21934377 21934417 41 TTCGGGAAATACGTATATCACTTGAACAACTGGACCTTAGT TTCAGGAAATACGTATATCACTTGAACAACTGGACCTTAGT < 41bp 1 0.211054743709502 1 0.389151066541672 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21934397 chr7:21934380 nonsynonymous SNV 0.997 0 4 hm5C_associated_SNPs_39655 0 0 0 0 1 DNAH11 chr7:21934423 5'GT 21934423 Upstream 44bp
chr11 581556 581556 1 + G A UCEC 581546 + 581526 581566 41 GCCTGGATGAGCTTGTGGCCCGGAGCCCAGGGCCGGATGGA GCCTGGATGAGCTTGTGGCCCGGAGCCCAGAGCCGGATGGA < 41bp 1 0.636422801861968 1 0.80035799741745 experiment 0.727154396276063 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:581546 chr11:581556 nonsynonymous SNV 0.029 3 31 hm5C_associated_SNPs_39656 0 0 1 0 3 PHRF1 chr11:581492 3'AG 581492 Downstream 65bp
chr11 581556 581556 1 + G A UCEC 581546 + 581526 581566 41 GCCTGGATGAGCTTGTGGCCCGGAGCCCAGGGCCGGATGGA GCCTGGATGAGCTTGTGGCCCGGAGCCCAGAGCCGGATGGA < 41bp 1 0.636422801861968 1 0.80035799741745 experiment 0.727154396276063 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:581546 chr11:581556 nonsynonymous SNV 0.029 3 31 hm5C_associated_SNPs_39656 0 0 1 0 3 PHRF1 chr11:581597 5'GT 581597 Upstream 42bp
chr11 581556 581556 1 + G A UCEC 581546 + 581526 581566 41 GCCTGGATGAGCTTGTGGCCCGGAGCCCAGGGCCGGATGGA GCCTGGATGAGCTTGTGGCCCGGAGCCCAGAGCCGGATGGA < 41bp 1 0.636422801861968 1 0.80035799741745 experiment 0.727154396276063 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:581546 chr11:581556 nonsynonymous SNV 0.029 3 31 hm5C_associated_SNPs_39656 0 0 1 0 3 PHRF1 chr11:581606 5'GT 581606 Upstream 51bp
chr11 581556 581556 1 + G A UCEC 581558 + 581538 581578 41 TTGTGGCCCGGAGCCCAGGGCCGGATGGACACCCACAGGTC TTGTGGCCCGGAGCCCAGAGCCGGATGGACACCCACAGGTC < 41bp 1 0.707724514545637 1 0.864603757858276 experiment 0.584550970908726 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:581558 chr11:581556 nonsynonymous SNV 0.029 3 19 hm5C_associated_SNPs_39657 0 0 1 0 3 PHRF1 chr11:581492 3'AG 581492 Downstream 65bp
chr11 581556 581556 1 + G A UCEC 581558 + 581538 581578 41 TTGTGGCCCGGAGCCCAGGGCCGGATGGACACCCACAGGTC TTGTGGCCCGGAGCCCAGAGCCGGATGGACACCCACAGGTC < 41bp 1 0.707724514545637 1 0.864603757858276 experiment 0.584550970908726 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:581558 chr11:581556 nonsynonymous SNV 0.029 3 19 hm5C_associated_SNPs_39657 0 0 1 0 3 PHRF1 chr11:581597 5'GT 581597 Upstream 42bp
chr11 581556 581556 1 + G A UCEC 581558 + 581538 581578 41 TTGTGGCCCGGAGCCCAGGGCCGGATGGACACCCACAGGTC TTGTGGCCCGGAGCCCAGAGCCGGATGGACACCCACAGGTC < 41bp 1 0.707724514545637 1 0.864603757858276 experiment 0.584550970908726 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:581558 chr11:581556 nonsynonymous SNV 0.029 3 19 hm5C_associated_SNPs_39657 0 0 1 0 3 PHRF1 chr11:581606 5'GT 581606 Upstream 51bp
chr11 581556 581556 1 + G A UCEC 581559 + 581539 581579 41 TGTGGCCCGGAGCCCAGGGCCGGATGGACACCCACAGGTCG TGTGGCCCGGAGCCCAGAGCCGGATGGACACCCACAGGTCG < 41bp 1 0.527889902610384 1 0.891148328781128 experiment 0.944220194779231 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:581559 chr11:581556 nonsynonymous SNV 0.029 3 18 hm5C_associated_SNPs_39658 0 0 1 0 3 PHRF1 chr11:581492 3'AG 581492 Downstream 65bp
chr11 581556 581556 1 + G A UCEC 581559 + 581539 581579 41 TGTGGCCCGGAGCCCAGGGCCGGATGGACACCCACAGGTCG TGTGGCCCGGAGCCCAGAGCCGGATGGACACCCACAGGTCG < 41bp 1 0.527889902610384 1 0.891148328781128 experiment 0.944220194779231 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:581559 chr11:581556 nonsynonymous SNV 0.029 3 18 hm5C_associated_SNPs_39658 0 0 1 0 3 PHRF1 chr11:581597 5'GT 581597 Upstream 42bp
chr11 581556 581556 1 + G A UCEC 581559 + 581539 581579 41 TGTGGCCCGGAGCCCAGGGCCGGATGGACACCCACAGGTCG TGTGGCCCGGAGCCCAGAGCCGGATGGACACCCACAGGTCG < 41bp 1 0.527889902610384 1 0.891148328781128 experiment 0.944220194779231 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:581559 chr11:581556 nonsynonymous SNV 0.029 3 18 hm5C_associated_SNPs_39658 0 0 1 0 3 PHRF1 chr11:581606 5'GT 581606 Upstream 51bp
chr19 4960698 4960698 1 + G A UCEC 4960706 + 4960686 4960726 41 TTTCGGGCACAGGTGTTCAGCTGCCCTGCCTGCCGCTACGA TTTCGGGCACAGATGTTCAGCTGCCCTGCCTGCCGCTACGA < 41bp 1 0.305787902767263 1 0.0509165823459625 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4960706 chr19:4960698 . 0.984 3 13 hm5C_associated_SNPs_39659 0 0 0 0 1 UHRF1 chr19:4960668 3'AG 4960668 Downstream 31bp
chr2 64112923 64112923 1 + T C UCEC 64112920 + 64112900 64112940 41 CATAGATAATCTGGGTGCCACAGTGGATCTGTATATTCTTA CATAGATAATCTGGGTGCCACAGCGGATCTGTATATTCTTA < 41bp 1 0.614893299613007 1 0.511567294597626 experiment 0.770213400773986 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UGP2 ENSG00000169764 CDS Human protein_coding chr2:64112920 chr2:64112923 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_39660 0 0 1 0 1 UGP2 chr2:64113020 5'GT 64113020 Upstream 98bp
chr9 131010984 131010984 1 + C T UCEC 131010994 + 131010974 131011014 41 TCAACAAGACCGTGAGGGACCTCATGCCCAAGACCATCATG TCAACAAGACTGTGAGGGACCTCATGCCCAAGACCATCATG < 41bp 1 0.403840012788068 1 0.0765591859817505 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM1 ENSG00000106976 CDS Human protein_coding chr9:131010994 chr9:131010984 synonymous SNV . 0 11 hm5C_associated_SNPs_39661 0 0 1 0 1 DNM1 chr9:131011032 5'GT 131011032 Upstream 49bp
chr12 123466273 123466273 1 + A C UCEC 123466278 + 123466258 123466298 41 CGGAAGAAGCGGGGGAAGTACAAGGACAAGAGGAGGAAGAA CGGAAGAAGCGGGGGCAGTACAAGGACAAGAGGAGGAAGAA < 41bp 1 0.798381821219978 1 0.738885164260864 experiment 0.403236357560043 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARL6IP4 ENSG00000182196 CDS Human protein_coding chr12:123466278 chr12:123466273 nonsynonymous SNV 0.993 3 16 hm5C_associated_SNPs_39662 0 0 1 0 2 ARL6IP4 chr12:123466203 3'AG 123466203 Downstream 71bp
chr12 123466273 123466273 1 + A C UCEC 123466278 + 123466258 123466298 41 CGGAAGAAGCGGGGGAAGTACAAGGACAAGAGGAGGAAGAA CGGAAGAAGCGGGGGCAGTACAAGGACAAGAGGAGGAAGAA < 41bp 1 0.798381821219978 1 0.738885164260864 experiment 0.403236357560043 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARL6IP4 ENSG00000182196 CDS Human protein_coding chr12:123466278 chr12:123466273 nonsynonymous SNV 0.993 3 16 hm5C_associated_SNPs_39662 0 0 1 0 2 ARL6IP4 chr12:123466356 5'GT 123466356 Upstream 84bp
chr17 80559265 80559265 1 + G A UCEC 80559263 + 80559243 80559283 41 GCGCCACAACGGTGACCAGCCGGAGCAGCCGGAGCTGAAGC GCGCCACAACGGTGACCAGCCGAAGCAGCCGGAGCTGAAGC < 41bp 1 0.615508735640923 1 0.797695159912109 experiment 0.768982528718154 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80559263 chr17:80559265 nonsynonymous SNV 0.032 1 23 hm5C_associated_SNPs_39663 0 0 1 0 1 FOXK2 chr17:80559179 3'AG 80559179 Downstream 87bp
chr17 80559265 80559265 1 + G A UCEC 80559268 + 80559248 80559288 41 ACAACGGTGACCAGCCGGAGCAGCCGGAGCTGAAGCGGATC ACAACGGTGACCAGCCGAAGCAGCCGGAGCTGAAGCGGATC < 41bp 1 0.355829635788969 1 0.584988057613373 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80559268 chr17:80559265 nonsynonymous SNV 0.032 1 18 hm5C_associated_SNPs_39664 0 0 1 0 1 FOXK2 chr17:80559179 3'AG 80559179 Downstream 87bp
chr17 80559265 80559265 1 + G A UCEC 80559277 + 80559257 80559297 41 ACCAGCCGGAGCAGCCGGAGCTGAAGCGGATCAAGACAGAA ACCAGCCGAAGCAGCCGGAGCTGAAGCGGATCAAGACAGAA < 41bp 1 0.505337732940889 1 0.528499960899353 experiment 0.989324534118222 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80559277 chr17:80559265 nonsynonymous SNV 0.032 1 9 hm5C_associated_SNPs_39665 0 0 1 0 1 FOXK2 chr17:80559179 3'AG 80559179 Downstream 87bp
chr11 65161541 65161541 1 + G A UCEC 65161556 + 65161536 65161576 41 GGAACGTGTTCTTCCCAAAGCGGCGGGAGCTCCAGGTGAGG GGAACATGTTCTTCCCAAAGCGGCGGGAGCTCCAGGTGAGG < 41bp 1 0.667883560004943 1 0.53642201423645 experiment 0.664232879990115 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65161556 chr11:65161541 nonsynonymous SNV 0.991 3 6 hm5C_associated_SNPs_39666 0 0 1 0 2 FRMD8 chr11:65161512 3'AG 65161512 Downstream 30bp
chr11 65161541 65161541 1 + G A UCEC 65161556 + 65161536 65161576 41 GGAACGTGTTCTTCCCAAAGCGGCGGGAGCTCCAGGTGAGG GGAACATGTTCTTCCCAAAGCGGCGGGAGCTCCAGGTGAGG < 41bp 1 0.667883560004943 1 0.53642201423645 experiment 0.664232879990115 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65161556 chr11:65161541 nonsynonymous SNV 0.991 3 6 hm5C_associated_SNPs_39666 0 0 1 0 2 FRMD8 chr11:65161570 5'GT 65161570 Upstream 30bp
chr16 88780139 88780139 1 + C T UCEC 88780149 + 88780129 88780169 41 TTTCTACAACCGCCTGTTCTCCGTTCCTTCTGTCTTCACAC TTTCTACAACTGCCTGTTCTCCGTTCCTTCTGTCTTCACAC < 41bp 1 0.186371658462977 1 0.15420264005661 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88780149 chr16:88780139 nonsynonymous SNV 0.521 3 11 hm5C_associated_SNPs_39667 0 0 0 0 2 CTU2 chr16:88780055 3'AG 88780055 Downstream 85bp
chr16 88780139 88780139 1 + C T UCEC 88780149 + 88780129 88780169 41 TTTCTACAACCGCCTGTTCTCCGTTCCTTCTGTCTTCACAC TTTCTACAACTGCCTGTTCTCCGTTCCTTCTGTCTTCACAC < 41bp 1 0.186371658462977 1 0.15420264005661 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88780149 chr16:88780139 nonsynonymous SNV 0.521 3 11 hm5C_associated_SNPs_39667 0 0 0 0 2 CTU2 chr16:88780186 5'GT 88780186 Upstream 48bp
chr22 46681154 46681154 1 + C T UCEC 46681140 + 46681120 46681160 41 AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCGCTGAC AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGTGCTGAC < 41bp 1 0.110955262912827 1 0.13754877448082 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC38 ENSG00000075234 CDS Human protein_coding chr22:46681140 chr22:46681154 nonsynonymous SNV 0.004 2 35 hm5C_associated_SNPs_39668 0 0 1 0 2 TTC38 chr22:46681138 3'AG 46681138 Downstream 17bp
chr22 46681154 46681154 1 + C T UCEC 46681140 + 46681120 46681160 41 AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCGCTGAC AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGTGCTGAC < 41bp 1 0.110955262912827 1 0.13754877448082 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC38 ENSG00000075234 CDS Human protein_coding chr22:46681140 chr22:46681154 nonsynonymous SNV 0.004 2 35 hm5C_associated_SNPs_39668 0 0 1 0 2 TTC38 chr22:46681176 5'GT 46681176 Upstream 23bp
chr19 7670125 7670125 1 + G A UCEC 7670120 + 7670100 7670140 41 ATGCCCCCACAGAGCACGTGCCCCCGGAGCTGTGGGAGCCC ATGCCCCCACAGAGCACGTGCCCCCAGAGCTGTGGGAGCCC < 41bp 1 0.0498197841801849 1 0.024714320898056 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7670120 chr19:7670125 synonymous SNV . 0 26 hm5C_associated_SNPs_39671 0 0 1 0 1 CAMSAP3 chr19:7670112 3'AG 7670112 Downstream 14bp
chr19 7670125 7670125 1 + G A UCEC 7670124 + 7670104 7670144 41 CCCCACAGAGCACGTGCCCCCGGAGCTGTGGGAGCCCTTCT CCCCACAGAGCACGTGCCCCCAGAGCTGTGGGAGCCCTTCT < 41bp 1 0.528927886931108 1 0.791458964347839 experiment 0.942144226137785 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7670124 chr19:7670125 synonymous SNV . 0 22 hm5C_associated_SNPs_39672 0 0 1 0 1 CAMSAP3 chr19:7670112 3'AG 7670112 Downstream 14bp
chr19 33465005 33465005 1 + C T UCEC 33465022 + 33465002 33465042 41 ACCCGGATGAGTGAACAATACTTCCCAGCCCTACAGAAGTT ACCTGGATGAGTGAACAATACTTCCCAGCCCTACAGAAGTT < 41bp 1 0.163006106613217 1 0.106115251779556 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33465022 chr19:33465005 nonsynonymous SNV 0.347 0 4 hm5C_associated_SNPs_39673 0 0 1 0 1 FAAP24 chr19:33464966 3'AG 33464966 Downstream 40bp
chr11 67069239 67069239 1 + G A UCEC 67069243 + 67069223 67069263 41 GACCAACACCCGGCCCGGTGCCCGCCCTCCTCCCCAGGCCA GACCAACACCCGGCCCAGTGCCCGCCCTCCTCCCCAGGCCA < 41bp 1 0.214907493009097 1 0.205197095870972 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKRD13D ENSG00000172932 CDS Human protein_coding chr11:67069243 chr11:67069239 nonsynonymous SNV 0.227 2 17 hm5C_associated_SNPs_39674 0 0 1 0 2 ANKRD13D chr11:67069203 3'AG 67069203 Downstream 37bp
chr11 67069239 67069239 1 + G A UCEC 67069243 + 67069223 67069263 41 GACCAACACCCGGCCCGGTGCCCGCCCTCCTCCCCAGGCCA GACCAACACCCGGCCCAGTGCCCGCCCTCCTCCCCAGGCCA < 41bp 1 0.214907493009097 1 0.205197095870972 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKRD13D ENSG00000172932 CDS Human protein_coding chr11:67069243 chr11:67069239 nonsynonymous SNV 0.227 2 17 hm5C_associated_SNPs_39674 0 0 1 0 2 ANKRD13D chr11:67069294 5'GT 67069294 Upstream 56bp
chr19 45851959 45851959 1 + C T UCEC 45851950 + 45851930 45851970 41 CAGACCTTCTCCATGATGCCCTGCAGATCCGGGAGCAGACG CAGACCTTCTCCATGATGCCCTGCAGATCTGGGAGCAGACG < 41bp 1 0.468128539530429 1 0.102408319711685 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLC3 ENSG00000104892 CDS Human protein_coding chr19:45851950 chr19:45851959 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_39675 0 0 0 0 2 KLC3 chr19:45851904 3'AG 45851904 Downstream 56bp
chr19 45851959 45851959 1 + C T UCEC 45851950 + 45851930 45851970 41 CAGACCTTCTCCATGATGCCCTGCAGATCCGGGAGCAGACG CAGACCTTCTCCATGATGCCCTGCAGATCTGGGAGCAGACG < 41bp 1 0.468128539530429 1 0.102408319711685 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLC3 ENSG00000104892 CDS Human protein_coding chr19:45851950 chr19:45851959 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_39675 0 0 0 0 2 KLC3 chr19:45851991 5'GT 45851991 Upstream 33bp
chr7 157159206 157159206 1 + G A UCEC 157159209 + 157159189 157159229 41 TTTTTAGCTAAGAAACGGGACATCTATGACAAATATGGCAA TTTTTAGCTAAGAAACGAGACATCTATGACAAATATGGCAA < 41bp 1 0.0482838276791669 1 0.0855221450328827 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJB6 ENSG00000105993 CDS Human protein_coding chr7:157159209 chr7:157159206 synonymous SNV . 0 18 hm5C_associated_SNPs_39676 0 0 1 0 2 DNAJB6 chr7:157159196 3'AG 157159196 Downstream 11bp
chr7 157159206 157159206 1 + G A UCEC 157159209 + 157159189 157159229 41 TTTTTAGCTAAGAAACGGGACATCTATGACAAATATGGCAA TTTTTAGCTAAGAAACGAGACATCTATGACAAATATGGCAA < 41bp 1 0.0482838276791669 1 0.0855221450328827 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJB6 ENSG00000105993 CDS Human protein_coding chr7:157159209 chr7:157159206 synonymous SNV . 0 18 hm5C_associated_SNPs_39676 0 0 1 0 2 DNAJB6 chr7:157159255 5'GT 157159255 Upstream 50bp
chr6 142519642 142519642 1 + C T UCEC 142519636 + 142519616 142519656 41 CACTCAGCCAACTCAGCCATCATCATCTTCAACTTATGACC CACTCAGCCAACTCAGCCATCATCATTTTCAACTTATGACC < 41bp 1 0.610289304494515 1 0.119728684425354 experiment 0.77942139101097 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient VTA1 ENSG00000009844 CDS Human protein_coding chr6:142519636 chr6:142519642 nonsynonymous SNV 0.989 1 27 hm5C_associated_SNPs_39677 0 0 1 0 1 VTA1 chr6:142519576 3'AG 142519576 Downstream 67bp
chr12 52695788 52695788 1 + G A UCEC 52695783 + 52695763 52695803 41 GCCCGGCCGCTGCTGCATCACCGCCGCCCCCTACCGTGGCA GCCCGGCCGCTGCTGCATCACCGCCACCCCCTACCGTGGCA < 41bp 1 0.379321289784384 1 0.0932632088661194 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KRT86 ENSG00000170442 CDS Human protein_coding chr12:52695783 chr12:52695788 nonsynonymous SNV 0.312 2 26 hm5C_associated_SNPs_39678 0 0 0 0 1 KRT86 chr12:52695697 3'AG 52695697 Downstream 92bp
chr12 49724724 49724724 1 + C T UCEC 49724720 + 49724700 49724740 41 CTTTGAGACCCCCAGCAGGCCAGGCAGGTAAGGAGTTGGCT CTTTGAGACCCCCAGCAGGCCAGGTAGGTAAGGAGTTGGCT < 41bp 1 0.440854295234705 1 0.118706464767456 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TROAP ENSG00000135451 CDS Human protein_coding chr12:49724720 chr12:49724724 nonsynonymous SNV 0.631 2 25 hm5C_associated_SNPs_39680 0 0 1 0 1 TROAP chr12:49724726 5'GT 49724726 Upstream 3bp
chr19 48675256 48675256 1 + C T UCEC 48675236 + 48675216 48675256 41 CTGGCGCGCTGCCGCTGGGCCAGTGCGCCCCCGCTCTACAC CTGGCGCGCTGCCGCTGGGCCAGTGCGCCCCCGCTCTACAT < 41bp 1 0.607226650393098 1 0.254834979772568 experiment 0.785546699213804 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control C19orf68 ENSG00000185453 CDS Human protein_coding chr19:48675236 chr19:48675256 nonsynonymous SNV 0.981 1 41 hm5C_associated_SNPs_39681 0 0 0 0 1 C19orf68 chr19:48675334 5'GT 48675334 Upstream 79bp
chr19 54964834 54964834 1 + A C UCEC 54964832 + 54964812 54964852 41 CAACACCAAGGGACTCTGAACCAGGTAACATCCTAGCCCAG CAACACCAAGGGACTCTGAACCCGGTAACATCCTAGCCCAG < 41bp 1 0.245296676404394 1 0.429027557373047 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54964832 chr19:54964834 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_39682 0 0 1 0 1 LENG8 chr19:54964835 5'GT 54964835 Upstream 2bp
chr11 61490976 61490976 1 + G A UCEC 61490991 + 61490971 61491011 41 CCCACGGGCCGCACCTTTGTCAAGCTGAGAGCCACCAAGAG CCCACAGGCCGCACCTTTGTCAAGCTGAGAGCCACCAAGAG < 41bp 1 0.432659590751087 1 0.844815611839294 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DAGLA ENSG00000134780 CDS Human protein_coding chr11:61490991 chr11:61490976 nonsynonymous SNV . 0 6 hm5C_associated_SNPs_39683 0 0 0 0 2 DAGLA chr11:61490906 3'AG 61490906 Downstream 71bp
chr11 61490976 61490976 1 + G A UCEC 61490991 + 61490971 61491011 41 CCCACGGGCCGCACCTTTGTCAAGCTGAGAGCCACCAAGAG CCCACAGGCCGCACCTTTGTCAAGCTGAGAGCCACCAAGAG < 41bp 1 0.432659590751087 1 0.844815611839294 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DAGLA ENSG00000134780 CDS Human protein_coding chr11:61490991 chr11:61490976 nonsynonymous SNV . 0 6 hm5C_associated_SNPs_39683 0 0 0 0 2 DAGLA chr11:61491044 5'GT 61491044 Upstream 69bp
chr16 56867232 56867232 1 + G A UCEC 56867224 + 56867204 56867244 41 GCAGTTGCCTTTCTTTTCCGCATGGAGCGGCTGCGCTGCCA GCAGTTGCCTTTCTTTTCCGCATGGAGCAGCTGCGCTGCCA < 41bp 1 0.471531162374459 1 0.20397824048996 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP93 ENSG00000102900 CDS Human protein_coding chr16:56867224 chr16:56867232 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_39685 0 0 1 0 1 NUP93 chr16:56867318 5'GT 56867318 Upstream 87bp
chr20 37662900 37662900 1 + G A UCEC 37662905 + 37662885 37662925 41 CTACATGAGAGATGTGACTGCCATTGAATCGGCCTGGCTGT CTACATGAGAGATGTAACTGCCATTGAATCGGCCTGGCTGT < 41bp 1 0.0605353010304001 1 0.07066410779953 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX35 ENSG00000101452 CDS Human protein_coding chr20:37662905 chr20:37662900 synonymous SNV . 0 16 hm5C_associated_SNPs_39686 0 0 1 0 1 DHX35 chr20:37662960 5'GT 37662960 Upstream 61bp
chr1 39987153 39987153 1 + G A UCEC 39987147 + 39987127 39987167 41 CTTCAGGGCCAGTCCGAGTCCCATCCGCACCCCTCGGGCAG CTTCAGGGCCAGTCCGAGTCCCATCCACACCCCTCGGGCAG < 41bp 1 0.112258803085245 1 0.484523117542267 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP8A ENSG00000183682 CDS Human protein_coding chr1:39987147 chr1:39987153 nonsynonymous SNV 0.010 2 27 hm5C_associated_SNPs_39687 0 0 0 0 1 BMP8A chr1:39987242 5'GT 39987242 Upstream 90bp
chr1 39987153 39987153 1 + G A UCEC 39987148 + 39987128 39987168 41 TTCAGGGCCAGTCCGAGTCCCATCCGCACCCCTCGGGCAGT TTCAGGGCCAGTCCGAGTCCCATCCACACCCCTCGGGCAGT < 41bp 1 0.0996351651396926 1 0.140620976686478 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP8A ENSG00000183682 CDS Human protein_coding chr1:39987148 chr1:39987153 nonsynonymous SNV 0.010 2 26 hm5C_associated_SNPs_39688 0 0 0 0 1 BMP8A chr1:39987242 5'GT 39987242 Upstream 90bp
chr9 33366678 33366678 1 + C T UCEC 33366677 + 33366657 33366697 41 CCTCCCATGAACAGAGACCACCGCCGGATCATCCATGACTT CCTCCCATGAACAGAGACCACTGCCGGATCATCCATGACTT < 41bp 1 0.514225892469472 1 0.0985100269317627 experiment 0.971548215061057 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33366677 chr9:33366678 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_39690 0 0 1 0 2 NFX1 chr9:33366627 3'AG 33366627 Downstream 52bp
chr9 33366678 33366678 1 + C T UCEC 33366677 + 33366657 33366697 41 CCTCCCATGAACAGAGACCACCGCCGGATCATCCATGACTT CCTCCCATGAACAGAGACCACTGCCGGATCATCCATGACTT < 41bp 1 0.514225892469472 1 0.0985100269317627 experiment 0.971548215061057 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33366677 chr9:33366678 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_39690 0 0 1 0 2 NFX1 chr9:33366772 5'GT 33366772 Upstream 95bp
chrX 153677069 153677069 1 + G A UCEC 153677085 + 153677065 153677105 41 CTGCGGCAGGAGTGGGAAGCCAAGCAGGAGAAGATCAAGAG CTGCAGCAGGAGTGGGAAGCCAAGCAGGAGAAGATCAAGAG < 41bp 1 0.666089201015767 1 0.764652013778687 experiment 0.667821597968467 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout FAM50A ENSG00000071859 CDS Human protein_coding chrX:153677085 chrX:153677069 nonsynonymous SNV 0.998 3 5 hm5C_associated_SNPs_39691 0 0 1 0 1 FAM50A chrX:153677038 3'AG 153677038 Downstream 32bp
chr22 38209490 38209490 1 + C T UCEC 38209473 + 38209453 38209493 41 TCACTGCCTCCCTCCAGGCCCTGCTGACCCCAGAGGACGCA TCACTGCCTCCCTCCAGGCCCTGCTGACCCCAGAGGATGCA < 41bp 1 0.32339922806105 1 0.0277171730995178 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GCAT ENSG00000100116 CDS Human protein_coding chr22:38209473 chr22:38209490 synonymous SNV . 0 38 hm5C_associated_SNPs_39692 0 0 1 0 1 GCAT chr22:38209470 3'AG 38209470 Downstream 21bp
chr17 47004378 47004378 1 + G A UCEC 47004386 + 47004366 47004406 41 CCCTCTTGATGCGCCTGGGACTGATACGTCAGAAAGTGCTG CCCTCTTGATGCACCTGGGACTGATACGTCAGAAAGTGCTG < 41bp 1 0.221143231871492 1 0.100110977888107 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE2Z ENSG00000159202 CDS Human protein_coding chr17:47004386 chr17:47004378 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_39694 0 0 1 0 1 UBE2Z chr17:47004326 3'AG 47004326 Downstream 53bp
chr19 2097277 2097277 1 + A G UCEC 2097268 + 2097248 2097288 41 CAGCCCGGGAGAAGCTGGACCAAGTGGCGACAGCAGTGTAC CAGCCCGGGAGAAGCTGGACCAAGTGGCGGCAGCAGTGTAC < 41bp 1 0.647157018132314 1 0.472919464111328 experiment 0.705685963735372 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IZUMO4 ENSG00000099840 CDS Human protein_coding chr19:2097268 chr19:2097277 nonsynonymous SNV 0.009 0 30 hm5C_associated_SNPs_39695 0 0 1 0 2 IZUMO4 chr19:2097251 3'AG 2097251 Downstream 27bp
chr19 2097277 2097277 1 + A G UCEC 2097268 + 2097248 2097288 41 CAGCCCGGGAGAAGCTGGACCAAGTGGCGACAGCAGTGTAC CAGCCCGGGAGAAGCTGGACCAAGTGGCGGCAGCAGTGTAC < 41bp 1 0.647157018132314 1 0.472919464111328 experiment 0.705685963735372 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IZUMO4 ENSG00000099840 CDS Human protein_coding chr19:2097268 chr19:2097277 nonsynonymous SNV 0.009 0 30 hm5C_associated_SNPs_39695 0 0 1 0 2 IZUMO4 chr19:2097331 5'GT 2097331 Upstream 55bp
chr6 15511626 15511626 1 + C T UCEC 15511609 + 15511589 15511629 41 CCAATGGCACCCCAGGGCTGCAGATGCTGGAAAGCAACGTC CCAATGGCACCCCAGGGCTGCAGATGCTGGAAAGCAATGTC < 41bp 1 0.179397561111866 1 0.34252804517746 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JARID2 ENSG00000008083 CDS Human protein_coding chr6:15511609 chr6:15511626 synonymous SNV . 0 38 hm5C_associated_SNPs_39696 0 0 1 0 2 JARID2 chr6:15511527 3'AG 15511527 Downstream 100bp
chr6 15511626 15511626 1 + C T UCEC 15511609 + 15511589 15511629 41 CCAATGGCACCCCAGGGCTGCAGATGCTGGAAAGCAACGTC CCAATGGCACCCCAGGGCTGCAGATGCTGGAAAGCAATGTC < 41bp 1 0.179397561111866 1 0.34252804517746 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JARID2 ENSG00000008083 CDS Human protein_coding chr6:15511609 chr6:15511626 synonymous SNV . 0 38 hm5C_associated_SNPs_39696 0 0 1 0 2 JARID2 chr6:15511632 5'GT 15511632 Upstream 7bp
chr3 142741791 142741791 1 + A G UCEC 142741800 + 142741780 142741820 41 TATGATGGAACATACGCTTCCCCCACCTCCATCCGGACTGC TATGATGGAACGTACGCTTCCCCCACCTCCATCCGGACTGC < 41bp 1 0.642305705686835 1 0.0450689196586609 experiment 0.715388588626329 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control U2SURP ENSG00000163714 CDS Human protein_coding chr3:142741800 chr3:142741791 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_39699 0 0 1 0 1 U2SURP chr3:142741695 3'AG 142741695 Downstream 97bp
chr1 32626278 32626278 1 + C A UCEC 32626288 + 32626268 32626308 41 ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA ACGTCTTGAAATGTTCCATCCTTAATCCTTTGTTAACGTGA < 41bp 1 0.157517562801082 1 0.488567173480988 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32626288 chr1:32626278 nonsynonymous SNV 0.999 1 11 hm5C_associated_SNPs_39700 0 0 1 0 3 KPNA6 chr1:32626216 3'AG 32626216 Downstream 63bp
chr1 32626278 32626278 1 + C A UCEC 32626288 + 32626268 32626308 41 ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA ACGTCTTGAAATGTTCCATCCTTAATCCTTTGTTAACGTGA < 41bp 1 0.157517562801082 1 0.488567173480988 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32626288 chr1:32626278 nonsynonymous SNV 0.999 1 11 hm5C_associated_SNPs_39700 0 0 1 0 3 KPNA6 chr1:32626220 3'AG 32626220 Downstream 59bp
chr1 32626278 32626278 1 + C A UCEC 32626288 + 32626268 32626308 41 ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA ACGTCTTGAAATGTTCCATCCTTAATCCTTTGTTAACGTGA < 41bp 1 0.157517562801082 1 0.488567173480988 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32626288 chr1:32626278 nonsynonymous SNV 0.999 1 11 hm5C_associated_SNPs_39700 0 0 1 0 3 KPNA6 chr1:32626304 5'GT 32626304 Upstream 27bp
chr9 19336381 19336381 1 + T G UCEC 19336394 + 19336374 19336414 41 AAAAGACTGTGCAAAGGTCACAGGTCTCCTCAATATCAGGT AAAAGACGGTGCAAAGGTCACAGGTCTCCTCAATATCAGGT < 41bp 1 0.396443845983891 1 0.228658318519592 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DENND4C ENSG00000137145 CDS Human protein_coding chr9:19336394 chr9:19336381 synonymous SNV . 0 8 hm5C_associated_SNPs_39701 0 0 1 0 1 DENND4C chr9:19336412 5'GT 19336412 Upstream 32bp
chr19 7598511 7598511 1 + G A UCEC 7598504 + 7598484 7598524 41 GGCAAGTTCCGCCGCGGGAGCGGCTCGGCCTGCAGCCTTCT GGCAAGTTCCGCCGCGGGAGCGGCTCGACCTGCAGCCTTCT < 41bp 1 0.417368330181266 1 0.0668114125728607 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCOLN1 ENSG00000090674;ENSG00000268614 CDS Human other chr19:7598504 chr19:7598511 nonsynonymous SNV 0.789 1 28 hm5C_associated_SNPs_39702 0 0 0 0 1 MCOLN1 chr19:7598539 5'GT 7598539 Upstream 29bp
chr2 26357872 26357872 1 + G A UCEC 26357860 + 26357840 26357880 41 GATATCAGCAGTGGAGGAGGCGTGACAGGCTGGAAGAGCAA GATATCAGCAGTGGAGGAGGCGTGACAGGCTGAAAGAGCAA < 41bp 1 0.706840787461327 1 0.469615191221237 experiment 0.586318425077347 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAB10 ENSG00000084733 CDS Human protein_coding chr2:26357860 chr2:26357872 stopgain 1.000 1 33 hm5C_associated_SNPs_39703 0 0 1 0 1 RAB10 chr2:26357807 3'AG 26357807 Downstream 66bp
chr2 26357872 26357872 1 + G A UCEC 26357865 + 26357845 26357885 41 CAGCAGTGGAGGAGGCGTGACAGGCTGGAAGAGCAAATGCT CAGCAGTGGAGGAGGCGTGACAGGCTGAAAGAGCAAATGCT < 41bp 1 0.538560872398692 1 0.673292875289917 experiment 0.922878255202616 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAB10 ENSG00000084733 CDS Human protein_coding chr2:26357865 chr2:26357872 stopgain 1.000 1 28 hm5C_associated_SNPs_39704 0 0 1 0 1 RAB10 chr2:26357807 3'AG 26357807 Downstream 66bp
chr9 97686343 97686343 1 + A G UCEC 97686328 + 97686308 97686348 41 GGGAACCATCTCTGTGGGACCCGCCTCTGCCATGAAATTGC GGGAACCATCTCTGTGGGACCCGCCTCTGCCATGAGATTGC < 41bp 1 0.100798527609131 1 0.116914391517639 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control C9orf3 ENSG00000148120 CDS Human protein_coding chr9:97686328 chr9:97686343 synonymous SNV . 0 36 hm5C_associated_SNPs_39705 0 0 1 0 1 C9orf3 chr9:97686268 3'AG 97686268 Downstream 76bp
chr20 31021634 31021634 1 + C T UCEC 31021621 + 31021601 31021641 41 TCCTTTCCCGAAAAGAAGCCCCGGCTTGAAGATCGTCAGTC TCCTTTCCCGAAAAGAAGCCCCGGCTTGAAGATTGTCAGTC < 41bp 1 0.148777769668117 1 0.171661615371704 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021621 chr20:31021634 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_39706 0 0 1 0 1 ASXL1 chr20:31021720 5'GT 31021720 Upstream 87bp
chr12 53516969 53516969 1 + C T UCEC 53516960 + 53516940 53516980 41 TTCTGCTTCGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT TTCTGCTTCGTCCTGGGGTTCTTCTATCCTGTCATGCTGAT < 41bp 1 0.108186500863127 1 0.054341733455658 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53516960 chr12:53516969 synonymous SNV . 0 30 hm5C_associated_SNPs_39709 0 0 0 0 1 SOAT2 chr12:53517000 5'GT 53517000 Upstream 32bp
chr6 44274733 44274733 1 - C T UCEC 44274726 - 44274706 44274746 41 CGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC CGTCGAGCTGTGCATTTCTCCATGGAGATCTTAAAGGCACC < 41bp 1 0.440030453891191 1 0.849573612213135 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human protein_coding chr6:44274726 chr6:44274733 nonsynonymous SNV 0.647 4 14 hm5C_associated_SNPs_39712 0 0 1 0 2 AARS2 chr6:44274660 5'GT 44274660 Upstream 74bp
chr6 44274733 44274733 1 - C T UCEC 44274726 - 44274706 44274746 41 CGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC CGTCGAGCTGTGCATTTCTCCATGGAGATCTTAAAGGCACC < 41bp 1 0.440030453891191 1 0.849573612213135 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human other chr6:44274726 chr6:44274733 nonsynonymous SNV 0.647 4 14 hm5C_associated_SNPs_39712 0 0 1 0 2 AARS2 chr6:44274768 3'AG 44274768 Downstream 36bp
chrX 152958756 152958756 1 + C T UCEC 152958738 + 152958718 152958758 41 GTGTGGATAGATGCGGGGACCCAGATTTTCTTTTCTTACGC GTGTGGATAGATGCGGGGACCCAGATTTTCTTTTCTTATGC < 41bp 1 0.568779784614126 1 0.143645882606506 experiment 0.862440430771748 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958738 chrX:152958756 synonymous SNV . 0 39 hm5C_associated_SNPs_39713 1 0 1 0 2 SLC6A8 chrX:152958718 3'AG 152958718 Downstream 39bp
chrX 152958756 152958756 1 + C T UCEC 152958738 + 152958718 152958758 41 GTGTGGATAGATGCGGGGACCCAGATTTTCTTTTCTTACGC GTGTGGATAGATGCGGGGACCCAGATTTTCTTTTCTTATGC < 41bp 1 0.568779784614126 1 0.143645882606506 experiment 0.862440430771748 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958738 chrX:152958756 synonymous SNV . 0 39 hm5C_associated_SNPs_39713 1 0 1 0 2 SLC6A8 chrX:152958821 5'GT 152958821 Upstream 66bp
chr19 15224385 15224385 1 + C T UCEC 15224376 + 15224356 15224396 41 CCTGTCTCCCTTCAGATCCCCGCCTGCCCCGACAATCTCCA CCTGTCTCCCTTCAGATCCCCGCCTGCCCTGACAATCTCCA < 41bp 1 0.185318205791803 1 0.0871029794216156 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15224376 chr19:15224385 stopgain 0.003 0 30 hm5C_associated_SNPs_39715 0 0 0 0 1 SYDE1 chr19:15224371 3'AG 15224371 Downstream 15bp
chr7 44733492 44733492 1 + G A UCEC 44733483 + 44733463 44733503 41 CCCTACCCCACTGACGTGGCCCGAGTGGTGAATGCCCCCAT CCCTACCCCACTGACGTGGCCCGAGTGGTAAATGCCCCCAT < 41bp 1 0.392153047860407 1 0.348213583230972 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44733483 chr7:44733492 synonymous SNV . 0 30 hm5C_associated_SNPs_39716 0 0 1 0 1 OGDH chr7:44733424 3'AG 44733424 Downstream 69bp
chr2 182784103 182784103 1 + G A UCEC 182784123 + 182784103 182784143 41 GCCTGCTGGGCCTGGAGGAGCAGCTTCGTGCTGTGCGCATG ACCTGCTGGGCCTGGAGGAGCAGCTTCGTGCTGTGCGCATG < 41bp 1 0.773449974513895 1 0.169962376356125 experiment 0.453100050972209 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182784123 chr2:182784103 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_39717 0 0 1 0 2 SSFA2 chr2:182784023 3'AG 182784023 Downstream 81bp
chr2 182784103 182784103 1 + G A UCEC 182784123 + 182784103 182784143 41 GCCTGCTGGGCCTGGAGGAGCAGCTTCGTGCTGTGCGCATG ACCTGCTGGGCCTGGAGGAGCAGCTTCGTGCTGTGCGCATG < 41bp 1 0.773449974513895 1 0.169962376356125 experiment 0.453100050972209 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182784123 chr2:182784103 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_39717 0 0 1 0 2 SSFA2 chr2:182784173 5'GT 182784173 Upstream 71bp
chr17 27938952 27938952 1 + A G UCEC 27938953 + 27938933 27938973 41 GCCATCACTGCAGAAGAATACTTCAACCCCAACTTTGAGCT GCCATCACTGCAGAAGAATGCTTCAACCCCAACTTTGAGCT < 41bp 1 0.28514821894224 1 0.300507992506027 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD13B ENSG00000198720 CDS Human protein_coding chr17:27938953 chr17:27938952 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_39718 0 0 1 0 2 ANKRD13B chr17:27938894 3'AG 27938894 Downstream 59bp
chr17 27938952 27938952 1 + A G UCEC 27938953 + 27938933 27938973 41 GCCATCACTGCAGAAGAATACTTCAACCCCAACTTTGAGCT GCCATCACTGCAGAAGAATGCTTCAACCCCAACTTTGAGCT < 41bp 1 0.28514821894224 1 0.300507992506027 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD13B ENSG00000198720 CDS Human protein_coding chr17:27938953 chr17:27938952 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_39718 0 0 1 0 2 ANKRD13B chr17:27939024 5'GT 27939024 Upstream 73bp
chr17 5264516 5264516 1 + G A UCEC 5264520 + 5264500 5264540 41 CAGGAGCATTTAGACAGCACCCGTGGCTCAGTTCATTCCTT CAGGAGCATTTAGACAACACCCGTGGCTCAGTTCATTCCTT < 41bp 1 0.169104665157124 1 0.337795794010162 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RABEP1 ENSG00000029725 CDS Human protein_coding chr17:5264520 chr17:5264516 nonsynonymous SNV 0.985 2 17 hm5C_associated_SNPs_39719 0 0 1 0 1 RABEP1 chr17:5264503 3'AG 5264503 Downstream 14bp
chr18 77102328 77102328 1 + C T UCEC 77102335 + 77102315 77102355 41 CAAAAGTTCACATCTCGTGTCTAGAACACAAGATATTCATA CAAAAGTTCACATTTCGTGTCTAGAACACAAGATATTCATA < 41bp 1 0.31799288472059 1 0.426186263561249 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP9B ENSG00000166377 CDS Human protein_coding chr18:77102335 chr18:77102328 nonsynonymous SNV 0.326 4 14 hm5C_associated_SNPs_39720 0 0 0 0 2 ATP9B chr18:77102268 3'AG 77102268 Downstream 61bp
chr18 77102328 77102328 1 + C T UCEC 77102335 + 77102315 77102355 41 CAAAAGTTCACATCTCGTGTCTAGAACACAAGATATTCATA CAAAAGTTCACATTTCGTGTCTAGAACACAAGATATTCATA < 41bp 1 0.31799288472059 1 0.426186263561249 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP9B ENSG00000166377 CDS Human protein_coding chr18:77102335 chr18:77102328 nonsynonymous SNV 0.326 4 14 hm5C_associated_SNPs_39720 0 0 0 0 2 ATP9B chr18:77102366 5'GT 77102366 Upstream 39bp
chrX 153035884 153035884 1 + C A UCEC 153035874 + 153035854 153035894 41 CTCCTTTTATGACTGCAGTGCCGTCCAGGCCTTGGAGGCGG CTCCTTTTATGACTGCAGTGCCGTCCAGGCATTGGAGGCGG < 41bp 1 0.0331080285996995 1 0.112483710050583 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153035874 chrX:153035884 synonymous SNV . 0 31 hm5C_associated_SNPs_39721 0 0 0 0 2 PLXNB3 chrX:153035793 3'AG 153035793 Downstream 92bp
chrX 153035884 153035884 1 + C A UCEC 153035874 + 153035854 153035894 41 CTCCTTTTATGACTGCAGTGCCGTCCAGGCCTTGGAGGCGG CTCCTTTTATGACTGCAGTGCCGTCCAGGCATTGGAGGCGG < 41bp 1 0.0331080285996995 1 0.112483710050583 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153035874 chrX:153035884 synonymous SNV . 0 31 hm5C_associated_SNPs_39721 0 0 0 0 2 PLXNB3 chrX:153035901 5'GT 153035901 Upstream 18bp
chr1 10435342 10435342 1 + G A UCEC 10435355 + 10435335 10435375 41 GCACAAAGCACCGTGGGGTCCTTTTGCAGGCCCTCAATGAC GCACAAAACACCGTGGGGTCCTTTTGCAGGCCCTCAATGAC < 41bp 1 0.0400958637322343 1 0.0515201389789581 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10435355 chr1:10435342 synonymous SNV . 0 8 hm5C_associated_SNPs_39722 0 0 0 0 2 KIF1B chr1:10435313 3'AG 10435313 Downstream 30bp
chr1 10435342 10435342 1 + G A UCEC 10435355 + 10435335 10435375 41 GCACAAAGCACCGTGGGGTCCTTTTGCAGGCCCTCAATGAC GCACAAAACACCGTGGGGTCCTTTTGCAGGCCCTCAATGAC < 41bp 1 0.0400958637322343 1 0.0515201389789581 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10435355 chr1:10435342 synonymous SNV . 0 8 hm5C_associated_SNPs_39722 0 0 0 0 2 KIF1B chr1:10435431 5'GT 10435431 Upstream 90bp
chr3 184045029 184045029 1 + G A UCEC 184045016 + 184044996 184045036 41 TCTTCCAGGAGTAGCTTGAGCCGAGAACGAGGCGAGAAAGC TCTTCCAGGAGTAGCTTGAGCCGAGAACGAGGCAAGAAAGC < 41bp 1 0.295159129283435 1 0.493088245391846 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184045016 chr3:184045029 nonsynonymous SNV 0.999 0 34 hm5C_associated_SNPs_39723 0 0 1 0 1 EIF4G1 chr3:184045004 3'AG 184045004 Downstream 26bp
chr5 147796677 147796677 1 + G A UCEC 147796689 + 147796669 147796709 41 ACATCCACGACAACAATCACCATCATCCAGATGACTCAGAC ACATCCACAACAACAATCACCATCATCCAGATGACTCAGAC < 41bp 1 0.391008812789741 1 0.097696840763092 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147796689 chr5:147796677 nonsynonymous SNV 1.000 0 9 hm5C_associated_SNPs_39724 0 0 1 0 1 FBXO38 chr5:147796767 5'GT 147796767 Upstream 91bp
chr12 2783736 2783736 1 + C T UCEC 2783718 + 2783698 2783738 41 GCCCTGCAGGGAACCTAGAACAAGCCAATGAGGAGCTGCGG GCCCTGCAGGGAACCTAGAACAAGCCAATGAGGAGCTGTGG < 41bp 1 0.279311695993514 1 0.849779605865479 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CACNA1C ENSG00000151067 CDS Human protein_coding chr12:2783718 chr12:2783736 nonsynonymous SNV 0.948 5 39 hm5C_associated_SNPs_39725 0 0 0 0 3 CACNA1C chr12:2783650 3'AG 2783650 Downstream 87bp
chr12 2783736 2783736 1 + C T UCEC 2783718 + 2783698 2783738 41 GCCCTGCAGGGAACCTAGAACAAGCCAATGAGGAGCTGCGG GCCCTGCAGGGAACCTAGAACAAGCCAATGAGGAGCTGTGG < 41bp 1 0.279311695993514 1 0.849779605865479 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CACNA1C ENSG00000151067 CDS Human protein_coding chr12:2783718 chr12:2783736 nonsynonymous SNV 0.948 5 39 hm5C_associated_SNPs_39725 0 0 0 0 3 CACNA1C chr12:2783707 3'AG 2783707 Downstream 30bp
chr12 2783736 2783736 1 + C T UCEC 2783718 + 2783698 2783738 41 GCCCTGCAGGGAACCTAGAACAAGCCAATGAGGAGCTGCGG GCCCTGCAGGGAACCTAGAACAAGCCAATGAGGAGCTGTGG < 41bp 1 0.279311695993514 1 0.849779605865479 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CACNA1C ENSG00000151067 CDS Human protein_coding chr12:2783718 chr12:2783736 nonsynonymous SNV 0.948 5 39 hm5C_associated_SNPs_39725 0 0 0 0 3 CACNA1C chr12:2783808 5'GT 2783808 Upstream 73bp
chr1 39898742 39898742 1 + G A UCEC 39898725 + 39898705 39898745 41 GTTTACTTTTCAAAGGCTTTCTCCATTGACATTATTCGACA GTTTACTTTTCAAAGGCTTTCTCCATTGACATTATTCAACA < 41bp 1 0.231989300754101 1 0.95836079120636 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39898725 chr1:39898742 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_39726 0 0 1 0 2 MACF1 chr1:39898720 3'AG 39898720 Downstream 23bp
chr1 39898742 39898742 1 + G A UCEC 39898725 + 39898705 39898745 41 GTTTACTTTTCAAAGGCTTTCTCCATTGACATTATTCGACA GTTTACTTTTCAAAGGCTTTCTCCATTGACATTATTCAACA < 41bp 1 0.231989300754101 1 0.95836079120636 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39898725 chr1:39898742 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_39726 0 0 1 0 2 MACF1 chr1:39898827 5'GT 39898827 Upstream 86bp
chr2 60987388 60987388 1 + A C UCEC 60987390 + 60987370 60987410 41 AATTAATTGACGCCATGAAACCATTTGGAGTGTTTGAAGAT AATTAATTGACGCCATGACACCATTTGGAGTGTTTGAAGAT < 41bp 1 0.0749940966139954 1 0.0652489066123962 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLG ENSG00000115421 CDS Human protein_coding chr2:60987390 chr2:60987388 nonsynonymous SNV 0.999 2 19 hm5C_associated_SNPs_39727 0 0 1 0 1 PAPOLG chr2:60987430 5'GT 60987430 Upstream 43bp
chr1 158988035 158988035 1 + C T UCEC 158988036 + 158988016 158988056 41 CAGAACCCGAAAACAGTGGCCAAATGTCAGGTAACTCCCAG CAGAACCCGAAAACAGTGGTCAAATGTCAGGTAACTCCCAG < 41bp 1 0.396919986824065 1 0.815744519233704 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout IFI16 ENSG00000163565 CDS Human protein_coding chr1:158988036 chr1:158988035 nonsynonymous SNV 0.001 0 20 hm5C_associated_SNPs_39729 0 0 0 0 1 IFI16 chr1:158988019 3'AG 158988019 Downstream 17bp
chr7 151817986 151817986 1 + G A UCEC 151818003 + 151817983 151818023 41 CTCGCTCATCAGACCCGCCACGGCTCATGAAATGCCACGGG CTCACTCATCAGACCCGCCACGGCTCATGAAATGCCACGGG < 41bp 1 0.416589597822684 1 0.274689376354218 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151818003 chr7:151817986 nonsynonymous SNV 0.999 2 4 hm5C_associated_SNPs_39730 0 0 1 0 2 GALNT11 chr7:151817916 3'AG 151817916 Downstream 71bp
chr7 151817986 151817986 1 + G A UCEC 151818003 + 151817983 151818023 41 CTCGCTCATCAGACCCGCCACGGCTCATGAAATGCCACGGG CTCACTCATCAGACCCGCCACGGCTCATGAAATGCCACGGG < 41bp 1 0.416589597822684 1 0.274689376354218 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151818003 chr7:151817986 nonsynonymous SNV 0.999 2 4 hm5C_associated_SNPs_39730 0 0 1 0 2 GALNT11 chr7:151818053 5'GT 151818053 Upstream 68bp
chr12 110457001 110457001 1 + G A UCEC 110457008 + 110456988 110457028 41 GTCACCACCGAACGCTTCGACCTTTCCCAAGAAATGGAGCG GTCACCACCGAACACTTCGACCTTTCCCAAGAAATGGAGCG < 41bp 1 0.0110707274003471 1 0.0631484687328339 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110457008 chr12:110457001 nonsynonymous SNV 0.735 0 14 hm5C_associated_SNPs_39731 0 0 1 0 1 ANKRD13A chr12:110456944 3'AG 110456944 Downstream 58bp
chr2 162226654 162226654 1 + G T UCEC 162226642 + 162226622 162226662 41 TCAGTGTGGAGGCAGTTGATCCAGTGTTCCAAGCTAAAATG TCAGTGTGGAGGCAGTTGATCCAGTGTTCCAATCTAAAATG < 41bp 1 0.543623499556453 1 0.343636393547058 experiment 0.912753000887095 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMD14 ENSG00000115233 CDS Human protein_coding chr2:162226642 chr2:162226654 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_39732 0 0 1 0 1 PSMD14 chr2:162226688 5'GT 162226688 Upstream 35bp
chr2 162226654 162226654 1 + G T UCEC 162226650 + 162226630 162226670 41 GAGGCAGTTGATCCAGTGTTCCAAGCTAAAATGTTGGATAT GAGGCAGTTGATCCAGTGTTCCAATCTAAAATGTTGGATAT < 41bp 1 0.190293813638519 1 0.391113460063934 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMD14 ENSG00000115233 CDS Human protein_coding chr2:162226650 chr2:162226654 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_39733 0 0 1 0 1 PSMD14 chr2:162226688 5'GT 162226688 Upstream 35bp
chr20 42341729 42341729 1 + C T UCEC 42341738 + 42341718 42341758 41 TGTCCACACTGCCCAAGTCTCTATCCTTGGTAAGGCTTCTG TGTCCACACTGTCCAAGTCTCTATCCTTGGTAAGGCTTCTG < 41bp 1 0.0744555295585049 1 0.0574725866317749 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42341738 chr20:42341729 nonsynonymous SNV 0.690 1 12 hm5C_associated_SNPs_39735 0 0 1 0 2 MYBL2 chr20:42341642 3'AG 42341642 Downstream 88bp
chr20 42341729 42341729 1 + C T UCEC 42341738 + 42341718 42341758 41 TGTCCACACTGCCCAAGTCTCTATCCTTGGTAAGGCTTCTG TGTCCACACTGTCCAAGTCTCTATCCTTGGTAAGGCTTCTG < 41bp 1 0.0744555295585049 1 0.0574725866317749 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42341738 chr20:42341729 nonsynonymous SNV 0.690 1 12 hm5C_associated_SNPs_39735 0 0 1 0 2 MYBL2 chr20:42341746 5'GT 42341746 Upstream 18bp
chr20 42341729 42341729 1 + C T UCEC 42341742 + 42341722 42341762 41 CACACTGCCCAAGTCTCTATCCTTGGTAAGGCTTCTGCTCC CACACTGTCCAAGTCTCTATCCTTGGTAAGGCTTCTGCTCC < 41bp 1 0.0869307021325502 1 0.101165413856506 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42341742 chr20:42341729 nonsynonymous SNV 0.690 1 8 hm5C_associated_SNPs_39736 0 0 1 0 2 MYBL2 chr20:42341642 3'AG 42341642 Downstream 88bp
chr20 42341729 42341729 1 + C T UCEC 42341742 + 42341722 42341762 41 CACACTGCCCAAGTCTCTATCCTTGGTAAGGCTTCTGCTCC CACACTGTCCAAGTCTCTATCCTTGGTAAGGCTTCTGCTCC < 41bp 1 0.0869307021325502 1 0.101165413856506 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42341742 chr20:42341729 nonsynonymous SNV 0.690 1 8 hm5C_associated_SNPs_39736 0 0 1 0 2 MYBL2 chr20:42341746 5'GT 42341746 Upstream 18bp
chr1 10332318 10332318 1 + A C UCEC 10332306 + 10332286 10332326 41 GTATTTATTTTAGGAAGGAGCAAATATTAATAAGTCTCTTA GTATTTATTTTAGGAAGGAGCAAATATTAATACGTCTCTTA < 41bp 1 0.0426958591029395 1 0.157997131347656 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10332306 chr1:10332318 nonsynonymous SNV 0.999 4 33 hm5C_associated_SNPs_39737 0 0 1 1 2 KIF1B chr1:10332299 3'AG 10332299 Downstream 20bp
chr1 10332318 10332318 1 + A C UCEC 10332306 + 10332286 10332326 41 GTATTTATTTTAGGAAGGAGCAAATATTAATAAGTCTCTTA GTATTTATTTTAGGAAGGAGCAAATATTAATACGTCTCTTA < 41bp 1 0.0426958591029395 1 0.157997131347656 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10332306 chr1:10332318 nonsynonymous SNV 0.999 4 33 hm5C_associated_SNPs_39737 0 0 1 1 2 KIF1B chr1:10332364 5'GT 10332364 Upstream 47bp
chr7 139107003 139107003 1 + G T UCEC 139107012 + 139106992 139107032 41 GAGATCGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAAT GAGATCGGAAATATAAGAAGCGGTCCTATGAGAGTGCTAAT < 41bp 1 0.146585613455569 1 0.413166046142578 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107012 chr7:139107003 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_39739 0 0 1 0 1 C7orf55-LUC7L2;LUC7L2 chr7:139106909 3'AG 139106909 Downstream 95bp
chr7 139107003 139107003 1 + G T UCEC 139107016 + 139106996 139107036 41 TCGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAATGGCA TCGGAAATATAAGAAGCGGTCCTATGAGAGTGCTAATGGCA < 41bp 1 0.0772241626459681 1 0.0810203552246094 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107016 chr7:139107003 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_39740 0 0 1 0 1 C7orf55-LUC7L2;LUC7L2 chr7:139106909 3'AG 139106909 Downstream 95bp
chr7 139107003 139107003 1 + G T UCEC 139107017 + 139106997 139107037 41 CGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAATGGCAG CGGAAATATAAGAAGCGGTCCTATGAGAGTGCTAATGGCAG < 41bp 1 0.154679586396767 1 0.0675919353961945 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107017 chr7:139107003 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_39741 0 0 1 0 1 C7orf55-LUC7L2;LUC7L2 chr7:139106909 3'AG 139106909 Downstream 95bp
chr1 104115880 104115880 1 + C T UCEC 104115875 + 104115855 104115895 41 TATCGAGAACTACAATGATGCTACTCAGGTAAATTTTTTTA TATCGAGAACTACAATGATGCTACTTAGGTAAATTTTTTTA < 41bp 1 0.304902263224687 1 0.197272598743439 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AMY2B ENSG00000240038 CDS Human protein_coding chr1:104115875 chr1:104115880 stopgain 0.370 1 26 hm5C_associated_SNPs_39742 0 0 0 0 1 AMY2B chr1:104115882 5'GT 104115882 Upstream 3bp
chr3 196537515 196537515 1 + T G UCEC 196537520 + 196537500 196537540 41 CAAGATATGAAAAAATTGGACAAGGGTAAGTATTTGTGACT CAAGATATGAAAAAAGTGGACAAGGGTAAGTATTTGTGACT < 41bp 1 0.47523814706245 1 0.67487758398056 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PAK2 ENSG00000180370 CDS Human protein_coding chr3:196537520 chr3:196537515 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_39744 0 0 1 0 1 PAK2 chr3:196537461 3'AG 196537461 Downstream 55bp
chr6 33243801 33243801 1 + C A UCEC 33243783 + 33243763 33243803 41 ATGCAGAATCCACGCCAGTACAAGATCCCAGACTGGTTCTT ATGCAGAATCCACGCCAGTACAAGATCCCAGACTGGTTATT < 41bp 1 0.753194976895006 1 0.0966349840164185 experiment 0.493610046209988 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243783 chr6:33243801 nonsynonymous SNV 0.989 2 39 hm5C_associated_SNPs_39752 0 0 1 0 2 RPS18 chr6:33243742 3'AG 33243742 Downstream 60bp
chr6 33243801 33243801 1 + C A UCEC 33243783 + 33243763 33243803 41 ATGCAGAATCCACGCCAGTACAAGATCCCAGACTGGTTCTT ATGCAGAATCCACGCCAGTACAAGATCCCAGACTGGTTATT < 41bp 1 0.753194976895006 1 0.0966349840164185 experiment 0.493610046209988 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243783 chr6:33243801 nonsynonymous SNV 0.989 2 39 hm5C_associated_SNPs_39752 0 0 1 0 2 RPS18 chr6:33243843 5'GT 33243843 Upstream 43bp
chr2 236403465 236403465 1 + G T UCEC 236403477 + 236403457 236403497 41 CAGAACCAGATCCGGGAGCACGTCATCGCCATCGAAGGTGA CAGAACCATATCCGGGAGCACGTCATCGCCATCGAAGGTGA < 41bp 1 0.359147695547521 1 0.118291318416595 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236403477 chr2:236403465 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_39753 0 0 1 0 1 AGAP1 chr2:236403493 5'GT 236403493 Upstream 29bp
chr11 68213918 68213918 1 + G A UCEC 68213907 + 68213887 68213927 41 GGCTTGGCTCTCCTCAGATCCTGAACCCGCCGCCCTCCCCG GGCTTGGCTCTCCTCAGATCCTGAACCCGCCACCCTCCCCG < 41bp 1 0.647123660550101 1 0.810072064399719 experiment 0.705752678899799 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68213907 chr11:68213918 synonymous SNV . 0 32 hm5C_associated_SNPs_39754 0 0 1 0 2 LRP5 chr11:68213904 3'AG 68213904 Downstream 15bp
chr11 68213918 68213918 1 + G A UCEC 68213907 + 68213887 68213927 41 GGCTTGGCTCTCCTCAGATCCTGAACCCGCCGCCCTCCCCG GGCTTGGCTCTCCTCAGATCCTGAACCCGCCACCCTCCCCG < 41bp 1 0.647123660550101 1 0.810072064399719 experiment 0.705752678899799 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68213907 chr11:68213918 synonymous SNV . 0 32 hm5C_associated_SNPs_39754 0 0 1 0 2 LRP5 chr11:68214001 5'GT 68214001 Upstream 84bp
chr17 4924127 4924127 1 + G A UCEC 4924120 + 4924100 4924140 41 GGCTGCAGGATCTGGAGAATCAGTACCGGAAAGAAAAGGAA GGCTGCAGGATCTGGAGAATCAGTACCAGAAAGAAAAGGAA < 41bp 1 0.506666785264037 1 0.803287506103516 experiment 0.986666429471927 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KIF1C ENSG00000129250 CDS Human protein_coding chr17:4924120 chr17:4924127 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_39755 0 0 1 0 2 KIF1C chr17:4924101 3'AG 4924101 Downstream 27bp
chr17 4924127 4924127 1 + G A UCEC 4924120 + 4924100 4924140 41 GGCTGCAGGATCTGGAGAATCAGTACCGGAAAGAAAAGGAA GGCTGCAGGATCTGGAGAATCAGTACCAGAAAGAAAAGGAA < 41bp 1 0.506666785264037 1 0.803287506103516 experiment 0.986666429471927 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KIF1C ENSG00000129250 CDS Human protein_coding chr17:4924120 chr17:4924127 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_39755 0 0 1 0 2 KIF1C chr17:4924173 5'GT 4924173 Upstream 47bp
chr17 4924127 4924127 1 + G A UCEC 4924125 + 4924105 4924145 41 CAGGATCTGGAGAATCAGTACCGGAAAGAAAAGGAAGAAGC CAGGATCTGGAGAATCAGTACCAGAAAGAAAAGGAAGAAGC < 41bp 1 0.325260394877489 1 0.149307399988174 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KIF1C ENSG00000129250 CDS Human protein_coding chr17:4924125 chr17:4924127 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_39756 0 0 1 0 2 KIF1C chr17:4924101 3'AG 4924101 Downstream 27bp
chr17 4924127 4924127 1 + G A UCEC 4924125 + 4924105 4924145 41 CAGGATCTGGAGAATCAGTACCGGAAAGAAAAGGAAGAAGC CAGGATCTGGAGAATCAGTACCAGAAAGAAAAGGAAGAAGC < 41bp 1 0.325260394877489 1 0.149307399988174 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KIF1C ENSG00000129250 CDS Human protein_coding chr17:4924125 chr17:4924127 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_39756 0 0 1 0 2 KIF1C chr17:4924173 5'GT 4924173 Upstream 47bp
chr17 4924127 4924127 1 + G A UCEC 4924126 + 4924106 4924146 41 AGGATCTGGAGAATCAGTACCGGAAAGAAAAGGAAGAAGCC AGGATCTGGAGAATCAGTACCAGAAAGAAAAGGAAGAAGCC < 41bp 1 0.45023003556877 1 0.624582886695862 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KIF1C ENSG00000129250 CDS Human protein_coding chr17:4924126 chr17:4924127 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_39757 0 0 1 0 2 KIF1C chr17:4924101 3'AG 4924101 Downstream 27bp
chr17 4924127 4924127 1 + G A UCEC 4924126 + 4924106 4924146 41 AGGATCTGGAGAATCAGTACCGGAAAGAAAAGGAAGAAGCC AGGATCTGGAGAATCAGTACCAGAAAGAAAAGGAAGAAGCC < 41bp 1 0.45023003556877 1 0.624582886695862 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KIF1C ENSG00000129250 CDS Human protein_coding chr17:4924126 chr17:4924127 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_39757 0 0 1 0 2 KIF1C chr17:4924173 5'GT 4924173 Upstream 47bp
chr12 551027 551027 1 + G T UCEC 551010 + 550990 551030 41 CCGTGACAGCAATAGACGGGCACATAAGATACAAGGAGAAC CCGTGACAGCAATAGACGGGCACATAAGATACAAGGATAAC < 41bp 1 0.218479400881138 1 0.0647686123847961 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC77 ENSG00000120647 CDS Human protein_coding chr12:551010 chr12:551027 stopgain 1.000 1 38 hm5C_associated_SNPs_39758 0 0 1 0 1 CCDC77 chr12:550940 3'AG 550940 Downstream 88bp
chr19 46026024 46026024 1 + C T UCEC 46026006 + 46025986 46026026 41 CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGA CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTTGA < 41bp 1 0.563832972339102 1 0.341933906078339 experiment 0.872334055321795 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026006 chr19:46026024 stopgain 0.003 0 39 hm5C_associated_SNPs_39760 0 0 1 0 3 VASP chr19:46025976 3'AG 46025976 Downstream 49bp
chr19 46026024 46026024 1 + C T UCEC 46026006 + 46025986 46026026 41 CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGA CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTTGA < 41bp 1 0.563832972339102 1 0.341933906078339 experiment 0.872334055321795 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026006 chr19:46026024 stopgain 0.003 0 39 hm5C_associated_SNPs_39760 0 0 1 0 3 VASP chr19:46025979 3'AG 46025979 Downstream 46bp
chr19 46026024 46026024 1 + C T UCEC 46026006 + 46025986 46026026 41 CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGA CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTTGA < 41bp 1 0.563832972339102 1 0.341933906078339 experiment 0.872334055321795 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026006 chr19:46026024 stopgain 0.003 0 39 hm5C_associated_SNPs_39760 0 0 1 0 3 VASP chr19:46026076 5'GT 46026076 Upstream 53bp
chr19 46026024 46026024 1 + C T UCEC 46026007 + 46025987 46026027 41 CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAA CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTTGAA < 41bp 1 0.340489598623197 1 0.261053144931793 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026007 chr19:46026024 stopgain 0.003 0 38 hm5C_associated_SNPs_39761 0 0 1 0 3 VASP chr19:46025976 3'AG 46025976 Downstream 49bp
chr19 46026024 46026024 1 + C T UCEC 46026007 + 46025987 46026027 41 CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAA CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTTGAA < 41bp 1 0.340489598623197 1 0.261053144931793 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026007 chr19:46026024 stopgain 0.003 0 38 hm5C_associated_SNPs_39761 0 0 1 0 3 VASP chr19:46025979 3'AG 46025979 Downstream 46bp
chr19 46026024 46026024 1 + C T UCEC 46026007 + 46025987 46026027 41 CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAA CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTTGAA < 41bp 1 0.340489598623197 1 0.261053144931793 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026007 chr19:46026024 stopgain 0.003 0 38 hm5C_associated_SNPs_39761 0 0 1 0 3 VASP chr19:46026076 5'GT 46026076 Upstream 53bp
chr19 46026024 46026024 1 + C T UCEC 46026008 + 46025988 46026028 41 TCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAAG TCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTTGAAG < 41bp 1 0.475212841352809 1 0.513307988643646 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026008 chr19:46026024 stopgain 0.003 0 37 hm5C_associated_SNPs_39762 0 0 1 0 3 VASP chr19:46025976 3'AG 46025976 Downstream 49bp
chr19 46026024 46026024 1 + C T UCEC 46026008 + 46025988 46026028 41 TCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAAG TCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTTGAAG < 41bp 1 0.475212841352809 1 0.513307988643646 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026008 chr19:46026024 stopgain 0.003 0 37 hm5C_associated_SNPs_39762 0 0 1 0 3 VASP chr19:46025979 3'AG 46025979 Downstream 46bp
chr19 46026024 46026024 1 + C T UCEC 46026008 + 46025988 46026028 41 TCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAAG TCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTTGAAG < 41bp 1 0.475212841352809 1 0.513307988643646 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026008 chr19:46026024 stopgain 0.003 0 37 hm5C_associated_SNPs_39762 0 0 1 0 3 VASP chr19:46026076 5'GT 46026076 Upstream 53bp
chr3 157841657 157841657 1 + G A UCEC 157841658 + 157841638 157841678 41 ATTATATTTTATTTCAGACGCAGGCATCGATCAAGCAGTAG ATTATATTTTATTTCAGACACAGGCATCGATCAAGCAGTAG < 41bp 1 0.369543883903858 1 0.0922740399837494 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157841658 chr3:157841657 nonsynonymous SNV 0.999 1 20 hm5C_associated_SNPs_39763 0 0 0 0 1 RSRC1 chr3:157841655 3'AG 157841655 Downstream 3bp
chr3 157841657 157841657 1 + G A UCEC 157841665 + 157841645 157841685 41 TTTATTTCAGACGCAGGCATCGATCAAGCAGTAGCTCTTCT TTTATTTCAGACACAGGCATCGATCAAGCAGTAGCTCTTCT < 41bp 1 0.079033237952865 1 0.127911627292633 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157841665 chr3:157841657 nonsynonymous SNV 0.999 1 13 hm5C_associated_SNPs_39764 0 0 0 0 1 RSRC1 chr3:157841655 3'AG 157841655 Downstream 3bp
chr19 49644745 49644745 1 + G A UCEC 49644738 + 49644718 49644758 41 GGGCTAGCCAAGCTGACAGGCCCAGGAGACAAGGACCGAAG GGGCTAGCCAAGCTGACAGGCCCAGGAAACAAGGACCGAAG < 41bp 1 0.180828734882997 1 0.331139892339706 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49644738 chr19:49644745 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_39766 0 0 0 0 2 PPFIA3 chr19:49644677 3'AG 49644677 Downstream 69bp
chr19 49644745 49644745 1 + G A UCEC 49644738 + 49644718 49644758 41 GGGCTAGCCAAGCTGACAGGCCCAGGAGACAAGGACCGAAG GGGCTAGCCAAGCTGACAGGCCCAGGAAACAAGGACCGAAG < 41bp 1 0.180828734882997 1 0.331139892339706 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49644738 chr19:49644745 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_39766 0 0 0 0 2 PPFIA3 chr19:49644770 5'GT 49644770 Upstream 26bp
chr3 20019810 20019810 1 + G A UCEC 20019825 + 20019805 20019845 41 GCACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA GCACAATCCTATGCAGATGACAATAGTTTATTATTCATGGA < 41bp 1 0.478686658219423 1 0.138228982686996 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019825 chr3:20019810 synonymous SNV . 0 6 hm5C_associated_SNPs_39767 0 0 1 2 2 RAB5A chr3:20019802 3'AG 20019802 Downstream 9bp
chr3 20019810 20019810 1 + G A UCEC 20019825 + 20019805 20019845 41 GCACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA GCACAATCCTATGCAGATGACAATAGTTTATTATTCATGGA < 41bp 1 0.478686658219423 1 0.138228982686996 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019825 chr3:20019810 synonymous SNV . 0 6 hm5C_associated_SNPs_39767 0 0 1 2 2 RAB5A chr3:20019895 5'GT 20019895 Upstream 86bp
chr10 17277845 17277845 1 + G A UCEC 17277858 + 17277838 17277878 41 TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG TTTATAGAATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG < 41bp 1 0.0619648514550018 1 0.507292807102203 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277858 chr10:17277845 synonymous SNV . 0 8 hm5C_associated_SNPs_39768 0 0 1 1 2 VIM chr10:17277845 3'AG 17277845 Downstream 1bp
chr10 17277845 17277845 1 + G A UCEC 17277858 + 17277838 17277878 41 TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG TTTATAGAATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG < 41bp 1 0.0619648514550018 1 0.507292807102203 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277858 chr10:17277845 synonymous SNV . 0 8 hm5C_associated_SNPs_39768 0 0 1 1 2 VIM chr10:17277888 5'GT 17277888 Upstream 44bp
chr10 88719418 88719418 1 + G T UCEC 88719427 + 88719407 88719447 41 AATGTTGTACAGAGCGTGACCTCAGGTGAGAAGCCCCAGGG AATGTTGTACATAGCGTGACCTCAGGTGAGAAGCCCCAGGG < 41bp 1 0.661473082962752 1 0.674708604812622 experiment 0.677053834074496 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNCG ENSG00000173267 CDS Human protein_coding chr10:88719427 chr10:88719418 nonsynonymous SNV 0.507 1 12 hm5C_associated_SNPs_39769 0 0 1 0 2 SNCG chr10:88719390 3'AG 88719390 Downstream 29bp
chr10 88719418 88719418 1 + G T UCEC 88719427 + 88719407 88719447 41 AATGTTGTACAGAGCGTGACCTCAGGTGAGAAGCCCCAGGG AATGTTGTACATAGCGTGACCTCAGGTGAGAAGCCCCAGGG < 41bp 1 0.661473082962752 1 0.674708604812622 experiment 0.677053834074496 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNCG ENSG00000173267 CDS Human protein_coding chr10:88719427 chr10:88719418 nonsynonymous SNV 0.507 1 12 hm5C_associated_SNPs_39769 0 0 1 0 2 SNCG chr10:88719431 5'GT 88719431 Upstream 14bp
chr8 61775119 61775119 1 + A G UCEC 61775123 + 61775103 61775143 41 CCAGATGGGTGGAGCTATGGCGCCTCCAATGAAGGATCTAC CCAGATGGGTGGAGCTGTGGCGCCTCCAATGAAGGATCTAC < 41bp 1 0.121809671865921 1 0.180670380592346 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHD7 ENSG00000171316 CDS Human protein_coding chr8:61775123 chr8:61775119 nonsynonymous SNV 0.996 2 17 hm5C_associated_SNPs_39771 0 0 1 0 2 CHD7 chr8:61775107 3'AG 61775107 Downstream 13bp
chr8 61775119 61775119 1 + A G UCEC 61775123 + 61775103 61775143 41 CCAGATGGGTGGAGCTATGGCGCCTCCAATGAAGGATCTAC CCAGATGGGTGGAGCTGTGGCGCCTCCAATGAAGGATCTAC < 41bp 1 0.121809671865921 1 0.180670380592346 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHD7 ENSG00000171316 CDS Human protein_coding chr8:61775123 chr8:61775119 nonsynonymous SNV 0.996 2 17 hm5C_associated_SNPs_39771 0 0 1 0 2 CHD7 chr8:61775211 5'GT 61775211 Upstream 93bp
chrX 70787353 70787353 1 + C A UCEC 70787359 + 70787339 70787379 41 CCCTATTTTAGATTCTGAAGCGTGTTCCCAATAGTGTACTC CCCTATTTTAGATTATGAAGCGTGTTCCCAATAGTGTACTC < 41bp 1 0.222911182256681 1 0.0636637508869171 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70787359 chrX:70787353 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_39772 0 0 1 0 1 OGT chrX:70787350 3'AG 70787350 Downstream 4bp
chr1 54670719 54670719 1 + G T UCEC 54670699 + 54670679 54670719 41 ATTACCTCAAAGGTGTAAAGCAGGCCCTCTGGCTCACCAAG ATTACCTCAAAGGTGTAAAGCAGGCCCTCTGGCTCACCAAT < 41bp 1 0.331189077565729 1 0.769272863864899 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MRPL37 ENSG00000116221 CDS Human protein_coding chr1:54670699 chr1:54670719 nonsynonymous SNV 0.987 4 41 hm5C_associated_SNPs_39773 0 0 1 0 1 MRPL37 chr1:54670691 3'AG 54670691 Downstream 29bp
chr11 61491043 61491043 1 + C T UCEC 61491024 + 61491004 61491044 41 ACCAAGAGGAGGCAGCGTAACCTGCGGACCTACAACCTGCG ACCAAGAGGAGGCAGCGTAACCTGCGGACCTACAACCTGTG < 41bp 1 0.1062756031457 1 0.105314940214157 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61491024 chr11:61491043 nonsynonymous SNV 0.999 4 40 hm5C_associated_SNPs_39774 0 0 1 0 1 DAGLA chr11:61491044 5'GT 61491044 Upstream 2bp
chr20 39721177 39721177 1 + T G UCEC 39721195 + 39721175 39721215 41 ATTTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT ATGTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT < 41bp 1 0.0689234539420216 1 0.0365831851959229 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721195 chr20:39721177 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_39775 0 0 1 5 2 TOP1 chr20:39721112 3'AG 39721112 Downstream 66bp
chr20 39721177 39721177 1 + T G UCEC 39721195 + 39721175 39721215 41 ATTTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT ATGTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT < 41bp 1 0.0689234539420216 1 0.0365831851959229 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721195 chr20:39721177 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_39775 0 0 1 5 2 TOP1 chr20:39721227 5'GT 39721227 Upstream 51bp
chr17 37359351 37359351 1 + C T UCEC 37359333 + 37359313 37359353 41 CGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGA CGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATTGA < 41bp 1 0.19790657199605 1 0.0841534435749054 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359333 chr17:37359351 synonymous SNV . 0 39 hm5C_associated_SNPs_39779 0 0 1 0 1 RPL19 chr17:37359362 5'GT 37359362 Upstream 12bp
chr17 37359351 37359351 1 + C T UCEC 37359334 + 37359314 37359354 41 GCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGAT GCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATTGAT < 41bp 1 0.736763407610253 1 0.198298096656799 experiment 0.526473184779494 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359334 chr17:37359351 synonymous SNV . 0 38 hm5C_associated_SNPs_39780 0 0 1 0 1 RPL19 chr17:37359362 5'GT 37359362 Upstream 12bp
chr12 98941386 98941386 1 + G A UCEC 98941402 + 98941382 98941422 41 GCAGGCCGGCCATTAGAACTCAGTGATTTCAGGATGGAGGA GCAGACCGGCCATTAGAACTCAGTGATTTCAGGATGGAGGA < 41bp 1 0.704759928903363 1 0.349451750516891 experiment 0.590480142193275 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMPO ENSG00000120802 CDS Human protein_coding chr12:98941402 chr12:98941386 nonsynonymous SNV 0.998 2 5 hm5C_associated_SNPs_39782 0 0 1 0 1 TMPO chr12:98941351 3'AG 98941351 Downstream 36bp
chr6 31593317 31593317 1 + G A UCEC 31593332 + 31593312 31593352 41 GTCATGATCCCCGGGGTGGGCTACAGCCTTCAGGCCCACCC GTCATAATCCCCGGGGTGGGCTACAGCCTTCAGGCCCACCC < 41bp 1 0.659592515275471 1 0.484743595123291 experiment 0.680814969449058 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593332 chr6:31593317 nonsynonymous SNV 0.999 0 6 hm5C_associated_SNPs_39783 0 0 1 0 2 PRRC2A chr6:31593237 3'AG 31593237 Downstream 81bp
chr6 31593317 31593317 1 + G A UCEC 31593332 + 31593312 31593352 41 GTCATGATCCCCGGGGTGGGCTACAGCCTTCAGGCCCACCC GTCATAATCCCCGGGGTGGGCTACAGCCTTCAGGCCCACCC < 41bp 1 0.659592515275471 1 0.484743595123291 experiment 0.680814969449058 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593332 chr6:31593317 nonsynonymous SNV 0.999 0 6 hm5C_associated_SNPs_39783 0 0 1 0 2 PRRC2A chr6:31593388 5'GT 31593388 Upstream 72bp
chr1 63282274 63282274 1 + G A UCEC 63282293 + 63282273 63282313 41 CGGGATGTACAATAGAGGATCACGTAATTGCAGGAAATGTA CAGGATGTACAATAGAGGATCACGTAATTGCAGGAAATGTA < 41bp 1 0.412618589890151 1 0.126147538423538 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATG4C ENSG00000125703 CDS Human protein_coding chr1:63282293 chr1:63282274 synonymous SNV . 0 2 hm5C_associated_SNPs_39784 0 0 1 0 1 ATG4C chr1:63282246 3'AG 63282246 Downstream 29bp
chr9 132863427 132863427 1 + C T UCEC 132863429 + 132863409 132863449 41 CACCATTGCACTCATTGGCACTGGCTGGGCTTTCATTAAGC CACCATTGCACTCATTGGTACTGGCTGGGCTTTCATTAAGC < 41bp 1 0.186786393158329 1 0.635406970977783 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GPR107 ENSG00000148358 CDS Human protein_coding chr9:132863429 chr9:132863427 synonymous SNV . 0 19 hm5C_associated_SNPs_39788 0 0 1 0 2 GPR107 chr9:132863385 3'AG 132863385 Downstream 43bp
chr9 132863427 132863427 1 + C T UCEC 132863429 + 132863409 132863449 41 CACCATTGCACTCATTGGCACTGGCTGGGCTTTCATTAAGC CACCATTGCACTCATTGGTACTGGCTGGGCTTTCATTAAGC < 41bp 1 0.186786393158329 1 0.635406970977783 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GPR107 ENSG00000148358 CDS Human protein_coding chr9:132863429 chr9:132863427 synonymous SNV . 0 19 hm5C_associated_SNPs_39788 0 0 1 0 2 GPR107 chr9:132863502 5'GT 132863502 Upstream 76bp
chr10 89474567 89474567 1 + T G UCEC 89474562 + 89474542 89474582 41 TCCTGAGCGTGTGCTTAAAACCAATTTGTCCACAGTGAGTG TCCTGAGCGTGTGCTTAAAACCAATGTGTCCACAGTGAGTG < 41bp 1 0.284238151184488 1 0.0579856336116791 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89474562 chr10:89474567 nonsynonymous SNV 0.988 0 26 hm5C_associated_SNPs_39792 0 0 1 0 2 PAPSS2 chr10:89474502 3'AG 89474502 Downstream 66bp
chr10 89474567 89474567 1 + T G UCEC 89474562 + 89474542 89474582 41 TCCTGAGCGTGTGCTTAAAACCAATTTGTCCACAGTGAGTG TCCTGAGCGTGTGCTTAAAACCAATGTGTCCACAGTGAGTG < 41bp 1 0.284238151184488 1 0.0579856336116791 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89474562 chr10:89474567 nonsynonymous SNV 0.988 0 26 hm5C_associated_SNPs_39792 0 0 1 0 2 PAPSS2 chr10:89474620 5'GT 89474620 Upstream 54bp
chr11 58347080 58347080 1 + A G UCEC 58347094 + 58347074 58347114 41 GCAAGAAGAGTCCGCGACTCCTGTGAGTAACAGTCTTTCAG GCAAGAGGAGTCCGCGACTCCTGTGAGTAACAGTCTTTCAG < 41bp 1 0.692614283402631 1 0.173291057348251 experiment 0.614771433194739 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58347094 chr11:58347080 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_39799 0 0 1 0 1 ZFP91 chr11:58347095 5'GT 58347095 Upstream 16bp
chr1 112305367 112305367 1 + G A UCEC 112305377 + 112305357 112305397 41 TGGATTGGGAGACATACATGCATCGGATTGGGAGAGCTGGC TGGATTGGGAAACATACATGCATCGGATTGGGAGAGCTGGC < 41bp 1 0.405635061596728 1 0.146975219249725 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX20 ENSG00000064703 CDS Human protein_coding chr1:112305377 chr1:112305367 synonymous SNV . 0 11 hm5C_associated_SNPs_39800 0 0 1 0 2 DDX20 chr1:112305299 3'AG 112305299 Downstream 69bp
chr1 112305367 112305367 1 + G A UCEC 112305377 + 112305357 112305397 41 TGGATTGGGAGACATACATGCATCGGATTGGGAGAGCTGGC TGGATTGGGAAACATACATGCATCGGATTGGGAGAGCTGGC < 41bp 1 0.405635061596728 1 0.146975219249725 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX20 ENSG00000064703 CDS Human protein_coding chr1:112305377 chr1:112305367 synonymous SNV . 0 11 hm5C_associated_SNPs_39800 0 0 1 0 2 DDX20 chr1:112305404 5'GT 112305404 Upstream 38bp
chr14 20943231 20943231 1 + C T UCEC 20943217 + 20943197 20943237 41 GAGATAATTCAACCTGTGTCCTAGGTTTGGAGATCGTTTCC GAGATAATTCAACCTGTGTCCTAGGTTTGGAGATTGTTTCC < 41bp 1 0.49740159698832 1 0.297461032867432 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNP ENSG00000198805 CDS Human protein_coding chr14:20943217 chr14:20943231 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_39801 0 0 1 0 1 PNP chr14:20943221 3'AG 20943221 Downstream 11bp
chr17 79425683 79425683 1 + C T UCEC 79425696 + 79425676 79425716 41 GGCCACACGCAACGCCAAGGCCATCCTGGGGAAGGGCCGGA GGCCACATGCAACGCCAAGGCCATCCTGGGGAAGGGCCGGA < 41bp 1 0.0257654273699278 1 0.0561671555042267 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79425696 chr17:79425683 nonsynonymous SNV 0.470 3 8 hm5C_associated_SNPs_39802 0 0 0 0 2 BAHCC1 chr17:79425647 3'AG 79425647 Downstream 37bp
chr17 79425683 79425683 1 + C T UCEC 79425696 + 79425676 79425716 41 GGCCACACGCAACGCCAAGGCCATCCTGGGGAAGGGCCGGA GGCCACATGCAACGCCAAGGCCATCCTGGGGAAGGGCCGGA < 41bp 1 0.0257654273699278 1 0.0561671555042267 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79425696 chr17:79425683 nonsynonymous SNV 0.470 3 8 hm5C_associated_SNPs_39802 0 0 0 0 2 BAHCC1 chr17:79425751 5'GT 79425751 Upstream 69bp
chr3 123348371 123348371 1 + G T UCEC 123348379 + 123348359 123348399 41 GGCATCGTCGGAGATCTCATCGAATGCCTCGTCGTCGAAGT GGCATCGTCGGATATCTCATCGAATGCCTCGTCGTCGAAGT < 41bp 1 0.492072832839362 1 0.293107241392136 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYLK ENSG00000065534 CDS Human protein_coding chr3:123348379 chr3:123348371 synonymous SNV . 0 13 hm5C_associated_SNPs_39804 0 0 1 0 1 MYLK chr3:123348341 3'AG 123348341 Downstream 31bp
chrX 48369835 48369835 1 + G A UCEC 48369821 + 48369801 48369841 41 GCTGTTCCTCTGCCGACATTCCTCCCATCGAGGCGTCTTCC GCTGTTCCTCTGCCGACATTCCTCCCATCGAGGCATCTTCC < 41bp 1 0.0775056802184394 1 0.105169266462326 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PORCN ENSG00000102312 CDS Human protein_coding chrX:48369821 chrX:48369835 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_39809 0 0 1 0 2 PORCN chrX:48369754 3'AG 48369754 Downstream 82bp
chrX 48369835 48369835 1 + G A UCEC 48369821 + 48369801 48369841 41 GCTGTTCCTCTGCCGACATTCCTCCCATCGAGGCGTCTTCC GCTGTTCCTCTGCCGACATTCCTCCCATCGAGGCATCTTCC < 41bp 1 0.0775056802184394 1 0.105169266462326 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PORCN ENSG00000102312 CDS Human protein_coding chrX:48369821 chrX:48369835 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_39809 0 0 1 0 2 PORCN chrX:48369875 5'GT 48369875 Upstream 41bp
chr5 176070164 176070164 1 + G T UCEC 176070171 + 176070151 176070191 41 GACGCCCACAGGAGAAAAGTCTCCAAACTCTCCCAGGACTT GACGCCCACAGGATAAAAGTCTCCAAACTCTCCCAGGACTT < 41bp 1 0.768276051384402 1 0.936944603919983 experiment 0.463447897231195 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control EIF4E1B ENSG00000175766 CDS Human protein_coding chr5:176070171 chr5:176070164 stopgain 0.001 0 14 hm5C_associated_SNPs_39810 0 0 0 0 1 EIF4E1B chr5:176070083 3'AG 176070083 Downstream 82bp
chr1 151063032 151063032 1 + G A UCEC 151063038 + 151063018 151063058 41 GACATGCGCACATCGTGGAACTGCTTGTTCGGGTAAAGCAA GACATGCGCACATCATGGAACTGCTTGTTCGGGTAAAGCAA < 41bp 1 0.4464357249083 1 0.160681545734406 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GABPB2 ENSG00000143458 CDS Human protein_coding chr1:151063038 chr1:151063032 nonsynonymous SNV 0.987 4 15 hm5C_associated_SNPs_39811 0 0 0 0 1 GABPB2 chr1:151063049 5'GT 151063049 Upstream 18bp
chr12 70704707 70704707 1 + G T UCEC 70704725 + 70704705 70704745 41 AAGAAGTTTGTAGAGGGGGTCGACAGTGACTACCATGACGA AATAAGTTTGTAGAGGGGGTCGACAGTGACTACCATGACGA < 41bp 1 0.76965965457843 1 0.491215169429779 experiment 0.460680690843139 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT2 ENSG00000111596 CDS Human protein_coding chr12:70704725 chr12:70704707 stopgain 1.000 4 3 hm5C_associated_SNPs_39815 0 0 1 0 2 CNOT2 chr12:70704675 3'AG 70704675 Downstream 33bp
chr12 70704707 70704707 1 + G T UCEC 70704725 + 70704705 70704745 41 AAGAAGTTTGTAGAGGGGGTCGACAGTGACTACCATGACGA AATAAGTTTGTAGAGGGGGTCGACAGTGACTACCATGACGA < 41bp 1 0.76965965457843 1 0.491215169429779 experiment 0.460680690843139 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT2 ENSG00000111596 CDS Human protein_coding chr12:70704725 chr12:70704707 stopgain 1.000 4 3 hm5C_associated_SNPs_39815 0 0 1 0 2 CNOT2 chr12:70704797 5'GT 70704797 Upstream 91bp
chr1 204957871 204957871 1 + G A UCEC 204957878 + 204957858 204957898 41 CTTTACCCTCAGCGCCAGGACGCAGGTGGGCTCTGGGGAAG CTTTACCCTCAGCACCAGGACGCAGGTGGGCTCTGGGGAAG < 41bp 1 0.66387310041494 1 0.427699029445648 experiment 0.672253799170119 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NFASC ENSG00000163531 CDS Human protein_coding chr1:204957878 chr1:204957871 nonsynonymous SNV 0.995 3 14 hm5C_associated_SNPs_39816 0 0 0 0 1 NFASC chr1:204957934 5'GT 204957934 Upstream 64bp
chr11 62653070 62653070 1 + T G UCEC 62653068 + 62653048 62653088 41 ATTGGCCTGGATGCAGCTGCCCTTCCTGGACAGGTACTGCT ATTGGCCTGGATGCAGCTGCCCGTCCTGGACAGGTACTGCT < 41bp 1 0.0978115902393773 1 0.0414822399616241 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62653068 chr11:62653070 nonsynonymous SNV 0.769 4 23 hm5C_associated_SNPs_39818 0 0 1 0 1 SLC3A2 chr11:62653080 5'GT 62653080 Upstream 11bp
chr11 62653070 62653070 1 + T G UCEC 62653069 + 62653049 62653089 41 TTGGCCTGGATGCAGCTGCCCTTCCTGGACAGGTACTGCTT TTGGCCTGGATGCAGCTGCCCGTCCTGGACAGGTACTGCTT < 41bp 1 0.13980522469747 1 0.0992474853992462 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62653069 chr11:62653070 nonsynonymous SNV 0.769 4 22 hm5C_associated_SNPs_39819 0 0 1 0 1 SLC3A2 chr11:62653080 5'GT 62653080 Upstream 11bp
chr1 26136283 26136283 1 + G A UCEC 26136269 + 26136249 26136289 41 CATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCC CATCATCCTCTCCAAAGACGCCACCCACGTCCGCAACTTCC < 41bp 1 0.037809886725062 1 0.111380010843277 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136269 chr1:26136283 nonsynonymous SNV 0.664 1 35 hm5C_associated_SNPs_39820 0 0 1 0 1 SELENON chr1:26136311 5'GT 26136311 Upstream 29bp
chr1 26136283 26136283 1 + G A UCEC 26136270 + 26136250 26136290 41 ATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCG ATCATCCTCTCCAAAGACGCCACCCACGTCCGCAACTTCCG < 41bp 1 0.104217155244986 1 0.0444973111152649 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136270 chr1:26136283 nonsynonymous SNV 0.664 1 34 hm5C_associated_SNPs_39821 0 0 1 0 1 SELENON chr1:26136311 5'GT 26136311 Upstream 29bp
chr1 26136283 26136283 1 + G A UCEC 26136273 + 26136253 26136293 41 ATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCT ATCCTCTCCAAAGACGCCACCCACGTCCGCAACTTCCGGCT < 41bp 1 0.125841210127134 1 0.09086874127388 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136273 chr1:26136283 nonsynonymous SNV 0.664 1 31 hm5C_associated_SNPs_39822 0 0 1 0 1 SELENON chr1:26136311 5'GT 26136311 Upstream 29bp
chr1 26136283 26136283 1 + G A UCEC 26136274 + 26136254 26136294 41 TCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCTC TCCTCTCCAAAGACGCCACCCACGTCCGCAACTTCCGGCTC < 41bp 1 0.520455499999473 1 0.0421298742294312 experiment 0.959089000001054 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136274 chr1:26136283 nonsynonymous SNV 0.664 1 30 hm5C_associated_SNPs_39823 0 0 1 0 1 SELENON chr1:26136311 5'GT 26136311 Upstream 29bp
chrX 147022111 147022111 1 + T C UCEC 147022104 + 147022084 147022124 41 TTCTTTTTCAGGGTATGGTACCATTTGTTTTTGTGGGAACA TTCTTTTTCAGGGTATGGTACCATTTGCTTTTGTGGGAACA < 41bp 1 0.0491452567590744 1 0.0383423864841461 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FMR1 ENSG00000102081 CDS Human protein_coding chrX:147022104 chrX:147022111 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_39824 0 0 1 0 1 FMR1 chrX:147022181 5'GT 147022181 Upstream 71bp
chr14 105916469 105916469 1 + C T UCEC 105916480 + 105916460 105916500 41 CTGCGGCATCGGGAGCTGTTCCTCTCCCGGCAGCTGGAGTC CTGCGGCATTGGGAGCTGTTCCTCTCCCGGCAGCTGGAGTC < 41bp 1 0.161243268372615 1 0.0851139724254608 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105916480 chr14:105916469 nonsynonymous SNV 0.986 4 10 hm5C_associated_SNPs_39826 0 0 1 0 2 MTA1 chr14:105916395 3'AG 105916395 Downstream 75bp
chr14 105916469 105916469 1 + C T UCEC 105916480 + 105916460 105916500 41 CTGCGGCATCGGGAGCTGTTCCTCTCCCGGCAGCTGGAGTC CTGCGGCATTGGGAGCTGTTCCTCTCCCGGCAGCTGGAGTC < 41bp 1 0.161243268372615 1 0.0851139724254608 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105916480 chr14:105916469 nonsynonymous SNV 0.986 4 10 hm5C_associated_SNPs_39826 0 0 1 0 2 MTA1 chr14:105916521 5'GT 105916521 Upstream 53bp
chr1 12316536 12316536 1 + G A UCEC 12316538 + 12316518 12316558 41 TTGTGATATTCAGCTGGAGACCATTCCCTTGAAACTCTCTC TTGTGATATTCAGCTGGAAACCATTCCCTTGAAACTCTCTC < 41bp 1 0.0212203642854807 1 0.0888688862323761 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VPS13D ENSG00000048707 CDS Human protein_coding chr1:12316538 chr1:12316536 synonymous SNV . 0 19 hm5C_associated_SNPs_39827 0 0 1 0 1 VPS13D chr1:12316560 5'GT 12316560 Upstream 25bp
chr17 7838350 7838350 1 + G A UCEC 7838362 + 7838342 7838382 41 CAGCCCAAGCCCTGGAGGAGCTGTTTCCCCGCTACACCAGC CAGCCCAAACCCTGGAGGAGCTGTTTCCCCGCTACACCAGC < 41bp 1 0.161614931744154 1 0.0803281962871552 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNTROB ENSG00000170037 CDS Human protein_coding chr17:7838362 chr17:7838350 nonsynonymous SNV 0.946 4 9 hm5C_associated_SNPs_39828 0 0 1 0 1 CNTROB chr17:7838307 3'AG 7838307 Downstream 44bp
chr4 103522107 103522107 1 + G T UCEC 103522101 + 103522081 103522121 41 ATTCTCAACTTGTGAGGGATCTACTAGAAGTCACATCTGGT ATTCTCAACTTGTGAGGGATCTACTATAAGTCACATCTGGT < 41bp 1 0.177742008244354 1 0.435966968536377 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103522101 chr4:103522107 stopgain 0.993 0 27 hm5C_associated_SNPs_39829 0 0 1 0 1 NFKB1 chr4:103522166 5'GT 103522166 Upstream 60bp
chr15 22955236 22955236 1 + G A UCEC 22955235 + 22955215 22955255 41 AAGGACCCCAAGAGCGGCTTCGACATAAAAGTACCACGCCG AAGGACCCCAAGAGCGGCTTCAACATAAAAGTACCACGCCG < 41bp 1 0.741675744073761 1 0.357343167066574 experiment 0.516648511852478 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22955235 chr15:22955236 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_39831 0 0 1 0 1 CYFIP1 chr15:22955280 5'GT 22955280 Upstream 45bp
chr11 71946468 71946468 1 + C T UCEC 71946459 + 71946439 71946479 41 GCTCCATGAAGGTGCGGGTGCCCACGGAGCGCCTGGGCACC GCTCCATGAAGGTGCGGGTGCCCACGGAGTGCCTGGGCACC < 41bp 1 0.0951028818933191 1 0.101585388183594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946459 chr11:71946468 nonsynonymous SNV 0.997 4 30 hm5C_associated_SNPs_39832 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 28bp
chr11 71946468 71946468 1 + C T UCEC 71946460 + 71946440 71946480 41 CTCCATGAAGGTGCGGGTGCCCACGGAGCGCCTGGGCACCC CTCCATGAAGGTGCGGGTGCCCACGGAGTGCCTGGGCACCC < 41bp 1 0.320692048677404 1 0.188982576131821 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946460 chr11:71946468 nonsynonymous SNV 0.997 4 29 hm5C_associated_SNPs_39833 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 28bp
chr11 71946468 71946468 1 + C T UCEC 71946476 + 71946456 71946496 41 GTGCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGG GTGCCCACGGAGTGCCTGGGCACCCGTGAGCGGCTCTACGG < 41bp 1 0.410197184578259 1 0.0302527844905853 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946476 chr11:71946468 nonsynonymous SNV 0.997 4 13 hm5C_associated_SNPs_39834 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 28bp
chr11 71946468 71946468 1 + C T UCEC 71946478 + 71946458 71946498 41 GCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTG GCCCACGGAGTGCCTGGGCACCCGTGAGCGGCTCTACGGTG < 41bp 1 0.364747660015713 1 0.0756767988204956 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946478 chr11:71946468 nonsynonymous SNV 0.997 4 11 hm5C_associated_SNPs_39835 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 28bp
chr11 71946468 71946468 1 + C T UCEC 71946479 + 71946459 71946499 41 CCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTGG CCCACGGAGTGCCTGGGCACCCGTGAGCGGCTCTACGGTGG < 41bp 1 0.189207649910988 1 0.379650801420212 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946479 chr11:71946468 nonsynonymous SNV 0.997 4 10 hm5C_associated_SNPs_39836 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 28bp
chr11 71946468 71946468 1 + C T UCEC 71946480 + 71946460 71946500 41 CCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTGGG CCACGGAGTGCCTGGGCACCCGTGAGCGGCTCTACGGTGGG < 41bp 1 0.765368918608755 1 0.561986088752747 experiment 0.469262162782489 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946480 chr11:71946468 nonsynonymous SNV 0.997 4 9 hm5C_associated_SNPs_39837 0 0 1 0 1 INPPL1 chr11:71946495 5'GT 71946495 Upstream 28bp
chr3 57293973 57293973 1 + C T UCEC 57293965 + 57293945 57293985 41 ATGTTGTTTATGAAACTATGCGCCAAATCTTAGCTGCCCGG ATGTTGTTTATGAAACTATGCGCCAAATTTTAGCTGCCCGG < 41bp 1 0.756672922289154 1 0.198619544506073 experiment 0.486654155421693 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control APPL1 ENSG00000157500 CDS Human protein_coding chr3:57293965 chr3:57293973 synonymous SNV . 0 29 hm5C_associated_SNPs_39838 0 0 1 0 1 APPL1 chr3:57294047 5'GT 57294047 Upstream 75bp
chr9 139752716 139752716 1 + T A UCEC 139752709 + 139752689 139752729 41 GATGATCTGCTCCTCCAGGACGGGCCCTGCCCTCAGCCAGG GATGATCTGCTCCTCCAGGACGGGCCCAGCCCTCAGCCAGG < 41bp 1 0.529347163691863 1 0.768393099308014 experiment 0.941305672616275 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139752709 chr9:139752716 nonsynonymous SNV 0.947 4 28 hm5C_associated_SNPs_39839 0 0 1 0 2 MAMDC4 chr9:139752638 3'AG 139752638 Downstream 79bp
chr9 139752716 139752716 1 + T A UCEC 139752709 + 139752689 139752729 41 GATGATCTGCTCCTCCAGGACGGGCCCTGCCCTCAGCCAGG GATGATCTGCTCCTCCAGGACGGGCCCAGCCCTCAGCCAGG < 41bp 1 0.529347163691863 1 0.768393099308014 experiment 0.941305672616275 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139752709 chr9:139752716 nonsynonymous SNV 0.947 4 28 hm5C_associated_SNPs_39839 0 0 1 0 2 MAMDC4 chr9:139752728 5'GT 139752728 Upstream 13bp
chr3 107524250 107524250 1 + A G UCEC 107524266 + 107524246 107524286 41 ATGGACAGCCAAAAGAAATGCCGCAGGCTCCTGTACTTATT ATGGGCAGCCAAAAGAAATGCCGCAGGCTCCTGTACTTATT < 41bp 1 0.520374077675059 1 0.239234089851379 experiment 0.959251844649881 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BBX ENSG00000114439 CDS Human protein_coding chr3:107524266 chr3:107524250 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_39840 0 0 1 0 1 BBX chr3:107524217 3'AG 107524217 Downstream 34bp
chr3 50091823 50091823 1 + G T UCEC 50091805 + 50091785 50091825 41 TGGGCACCGATCTTCCTGTTCATTCTGCAAGAACCCAAGAG TGGGCACCGATCTTCCTGTTCATTCTGCAAGAACCCAATAG < 41bp 1 0.0648999082664504 1 0.0214432179927826 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50091805 chr3:50091823 stopgain 0.950 1 39 hm5C_associated_SNPs_39841 0 0 1 0 1 RBM6 chr3:50091828 5'GT 50091828 Upstream 6bp
chr16 57486761 57486761 1 + G A UCEC 57486774 + 57486754 57486794 41 GTGAGGAGCAGTTGCAGCACCGCATCCTGACGGCAGCCCTT GTGAGGAACAGTTGCAGCACCGCATCCTGACGGCAGCCCTT < 41bp 1 0.57701284986109 1 0.720412135124207 experiment 0.84597430027782 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57486774 chr16:57486761 synonymous SNV . 0 8 hm5C_associated_SNPs_39843 0 0 1 0 2 COQ9 chr16:57486713 3'AG 57486713 Downstream 49bp
chr16 57486761 57486761 1 + G A UCEC 57486774 + 57486754 57486794 41 GTGAGGAGCAGTTGCAGCACCGCATCCTGACGGCAGCCCTT GTGAGGAACAGTTGCAGCACCGCATCCTGACGGCAGCCCTT < 41bp 1 0.57701284986109 1 0.720412135124207 experiment 0.84597430027782 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57486774 chr16:57486761 synonymous SNV . 0 8 hm5C_associated_SNPs_39843 0 0 1 0 2 COQ9 chr16:57486848 5'GT 57486848 Upstream 88bp
chr2 232035381 232035381 1 + A G UCEC 232035362 + 232035342 232035382 41 ACCTGTGGCAGCACATGGCCCAAAAATCGAGGAGGAGGAAC ACCTGTGGCAGCACATGGCCCAAAAATCGAGGAGGAGGAGC < 41bp 1 0.599132921080127 1 0.0963594019412994 experiment 0.801734157839746 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMD1 ENSG00000173692 CDS Human protein_coding chr2:232035362 chr2:232035381 synonymous SNV . 0 40 hm5C_associated_SNPs_39844 0 0 1 0 1 PSMD1 chr2:232035435 5'GT 232035435 Upstream 55bp
chr7 91735008 91735008 1 + C T UCEC 91735017 + 91734997 91735037 41 AATTTTTGGTTCGACGGTGGCATCGAGTCACAGGTTCTGTT AATTTTTGGTTTGACGGTGGCATCGAGTCACAGGTTCTGTT < 41bp 1 0.109460808164268 1 0.203256607055664 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91735017 chr7:91735008 stopgain 0.998 0 12 hm5C_associated_SNPs_39845 0 0 1 0 2 AKAP9 chr7:91734992 3'AG 91734992 Downstream 17bp
chr7 91735008 91735008 1 + C T UCEC 91735017 + 91734997 91735037 41 AATTTTTGGTTCGACGGTGGCATCGAGTCACAGGTTCTGTT AATTTTTGGTTTGACGGTGGCATCGAGTCACAGGTTCTGTT < 41bp 1 0.109460808164268 1 0.203256607055664 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91735017 chr7:91735008 stopgain 0.998 0 12 hm5C_associated_SNPs_39845 0 0 1 0 2 AKAP9 chr7:91735077 5'GT 91735077 Upstream 70bp
chr13 94679995 94679995 1 + C T UCEC 94679996 + 94679976 94680016 41 TCTGCAGGTCAGCCCAACCCCAGGGTGTATCCGTGCCCTCA TCTGCAGGTCAGCCCAACCTCAGGGTGTATCCGTGCCCTCA < 41bp 1 0.731262978114213 1 0.826243996620178 experiment 0.537474043771573 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPC6 ENSG00000183098 CDS Human protein_coding chr13:94679996 chr13:94679995 nonsynonymous SNV 0.991 1 20 hm5C_associated_SNPs_39846 0 0 1 0 1 GPC6 chr13:94679983 3'AG 94679983 Downstream 13bp
chr9 137702141 137702141 1 + A G UCEC 137702152 + 137702132 137702172 41 GCAAGGGGGACAAAGGAGAACAGGTAAGTATTGGCACGGGG GCAAGGGGGGCAAAGGAGAACAGGTAAGTATTGGCACGGGG < 41bp 1 0.507469593614506 1 0.581946849822998 experiment 0.985060812770988 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137702152 chr9:137702141 nonsynonymous SNV 0.973 2 10 hm5C_associated_SNPs_39853 0 0 0 0 2 COL5A1 chr9:137702101 3'AG 137702101 Downstream 41bp
chr9 137702141 137702141 1 + A G UCEC 137702152 + 137702132 137702172 41 GCAAGGGGGACAAAGGAGAACAGGTAAGTATTGGCACGGGG GCAAGGGGGGCAAAGGAGAACAGGTAAGTATTGGCACGGGG < 41bp 1 0.507469593614506 1 0.581946849822998 experiment 0.985060812770988 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137702152 chr9:137702141 nonsynonymous SNV 0.973 2 10 hm5C_associated_SNPs_39853 0 0 0 0 2 COL5A1 chr9:137702154 5'GT 137702154 Upstream 14bp
chr20 39977792 39977792 1 + C T UCEC 39977802 + 39977782 39977822 41 ACTCGGATGGCGAGTGGCCCCCCCAGGCCAGGTAAGAGTCC ACTCGGATGGTGAGTGGCCCCCCCAGGCCAGGTAAGAGTCC < 41bp 1 0.571116387124034 1 0.433913618326187 experiment 0.857767225751933 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39977802 chr20:39977792 synonymous SNV . 0 11 hm5C_associated_SNPs_39854 0 0 1 0 3 LPIN3 chr20:39977729 3'AG 39977729 Downstream 64bp
chr20 39977792 39977792 1 + C T UCEC 39977802 + 39977782 39977822 41 ACTCGGATGGCGAGTGGCCCCCCCAGGCCAGGTAAGAGTCC ACTCGGATGGTGAGTGGCCCCCCCAGGCCAGGTAAGAGTCC < 41bp 1 0.571116387124034 1 0.433913618326187 experiment 0.857767225751933 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39977802 chr20:39977792 synonymous SNV . 0 11 hm5C_associated_SNPs_39854 0 0 1 0 3 LPIN3 chr20:39977732 3'AG 39977732 Downstream 61bp
chr20 39977792 39977792 1 + C T UCEC 39977802 + 39977782 39977822 41 ACTCGGATGGCGAGTGGCCCCCCCAGGCCAGGTAAGAGTCC ACTCGGATGGTGAGTGGCCCCCCCAGGCCAGGTAAGAGTCC < 41bp 1 0.571116387124034 1 0.433913618326187 experiment 0.857767225751933 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39977802 chr20:39977792 synonymous SNV . 0 11 hm5C_associated_SNPs_39854 0 0 1 0 3 LPIN3 chr20:39977812 5'GT 39977812 Upstream 21bp
chr6 7578787 7578787 1 + G T UCEC 7578790 + 7578770 7578810 41 TGCTGAAGAGTTTGGAAGATCTGAAGGTAATTTATACTGTC TGCTGAAGAGTTTGGAATATCTGAAGGTAATTTATACTGTC < 41bp 1 0.632528505835512 1 0.503294348716736 experiment 0.734942988328976 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7578790 chr6:7578787 nonsynonymous SNV 1.000 5 18 hm5C_associated_SNPs_39855 0 0 1 0 2 DSP chr6:7578697 3'AG 7578697 Downstream 91bp
chr6 7578787 7578787 1 + G T UCEC 7578790 + 7578770 7578810 41 TGCTGAAGAGTTTGGAAGATCTGAAGGTAATTTATACTGTC TGCTGAAGAGTTTGGAATATCTGAAGGTAATTTATACTGTC < 41bp 1 0.632528505835512 1 0.503294348716736 experiment 0.734942988328976 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7578790 chr6:7578787 nonsynonymous SNV 1.000 5 18 hm5C_associated_SNPs_39855 0 0 1 0 2 DSP chr6:7578795 5'GT 7578795 Upstream 9bp
chrX 152958980 152958980 1 + C A UCEC 152958977 + 152958957 152958997 41 TTCTTTGCTGGCTTCGTGGTCTTCTCCATCCTGGGCTTCAT TTCTTTGCTGGCTTCGTGGTCTTATCCATCCTGGGCTTCAT < 41bp 1 0.0850808943971229 1 0.0371498763561249 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958977 chrX:152958980 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_39856 0 0 1 0 3 SLC6A8 chrX:152958917 3'AG 152958917 Downstream 64bp
chrX 152958980 152958980 1 + C A UCEC 152958977 + 152958957 152958997 41 TTCTTTGCTGGCTTCGTGGTCTTCTCCATCCTGGGCTTCAT TTCTTTGCTGGCTTCGTGGTCTTATCCATCCTGGGCTTCAT < 41bp 1 0.0850808943971229 1 0.0371498763561249 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958977 chrX:152958980 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_39856 0 0 1 0 3 SLC6A8 chrX:152958947 3'AG 152958947 Downstream 34bp
chrX 152958980 152958980 1 + C A UCEC 152958977 + 152958957 152958997 41 TTCTTTGCTGGCTTCGTGGTCTTCTCCATCCTGGGCTTCAT TTCTTTGCTGGCTTCGTGGTCTTATCCATCCTGGGCTTCAT < 41bp 1 0.0850808943971229 1 0.0371498763561249 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958977 chrX:152958980 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_39856 0 0 1 0 3 SLC6A8 chrX:152959041 5'GT 152959041 Upstream 62bp
chrX 152958980 152958980 1 + C A UCEC 152958983 + 152958963 152959003 41 GCTGGCTTCGTGGTCTTCTCCATCCTGGGCTTCATGGCTGC GCTGGCTTCGTGGTCTTATCCATCCTGGGCTTCATGGCTGC < 41bp 1 0.326621366231245 1 0.646557509899139 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958983 chrX:152958980 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_39857 0 0 1 0 3 SLC6A8 chrX:152958917 3'AG 152958917 Downstream 64bp
chrX 152958980 152958980 1 + C A UCEC 152958983 + 152958963 152959003 41 GCTGGCTTCGTGGTCTTCTCCATCCTGGGCTTCATGGCTGC GCTGGCTTCGTGGTCTTATCCATCCTGGGCTTCATGGCTGC < 41bp 1 0.326621366231245 1 0.646557509899139 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958983 chrX:152958980 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_39857 0 0 1 0 3 SLC6A8 chrX:152958947 3'AG 152958947 Downstream 34bp
chrX 152958980 152958980 1 + C A UCEC 152958983 + 152958963 152959003 41 GCTGGCTTCGTGGTCTTCTCCATCCTGGGCTTCATGGCTGC GCTGGCTTCGTGGTCTTATCCATCCTGGGCTTCATGGCTGC < 41bp 1 0.326621366231245 1 0.646557509899139 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958983 chrX:152958980 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_39857 0 0 1 0 3 SLC6A8 chrX:152959041 5'GT 152959041 Upstream 62bp
chr12 62918958 62918958 1 + C A UCEC 62918965 + 62918945 62918985 41 ACAGTCCTTGTTTCTTGTCCCCCCTACTGGAAATCCTGCAA ACAGTCCTTGTTTATTGTCCCCCCTACTGGAAATCCTGCAA < 41bp 1 0.138494895983404 1 0.0526989698410034 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62918965 chr12:62918958 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_39859 0 0 1 0 2 MON2 chr12:62918864 3'AG 62918864 Downstream 95bp
chr12 62918958 62918958 1 + C A UCEC 62918965 + 62918945 62918985 41 ACAGTCCTTGTTTCTTGTCCCCCCTACTGGAAATCCTGCAA ACAGTCCTTGTTTATTGTCCCCCCTACTGGAAATCCTGCAA < 41bp 1 0.138494895983404 1 0.0526989698410034 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62918965 chr12:62918958 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_39859 0 0 1 0 2 MON2 chr12:62919000 5'GT 62919000 Upstream 43bp
chr11 62550241 62550241 1 + C T UCEC 62550249 + 62550229 62550269 41 GCAGATCCTGTGCGGCCGCTCTGCTGCCACTATGGAGCCGT GCAGATCCTGTGTGGCCGCTCTGCTGCCACTATGGAGCCGT < 41bp 1 0.701147476029735 1 0.456086724996567 experiment 0.59770504794053 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF6L ENSG00000162227 CDS Human protein_coding chr11:62550249 chr11:62550241 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_39860 0 0 1 0 2 TAF6L chr11:62550165 3'AG 62550165 Downstream 77bp
chr11 62550241 62550241 1 + C T UCEC 62550249 + 62550229 62550269 41 GCAGATCCTGTGCGGCCGCTCTGCTGCCACTATGGAGCCGT GCAGATCCTGTGTGGCCGCTCTGCTGCCACTATGGAGCCGT < 41bp 1 0.701147476029735 1 0.456086724996567 experiment 0.59770504794053 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF6L ENSG00000162227 CDS Human protein_coding chr11:62550249 chr11:62550241 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_39860 0 0 1 0 2 TAF6L chr11:62550297 5'GT 62550297 Upstream 57bp
chr2 102486863 102486863 1 + C A UCEC 102486859 + 102486839 102486879 41 ATGACCCCATCCAAGGAGGGCACTCTAATCGTCCGCCAGGT ATGACCCCATCCAAGGAGGGCACTATAATCGTCCGCCAGGT < 41bp 1 0.363779324390321 1 0.150576144456863 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102486859 chr2:102486863 nonsynonymous SNV 0.786 4 25 hm5C_associated_SNPs_39863 0 0 1 0 1 MAP4K4 chr2:102486877 5'GT 102486877 Upstream 15bp
chr17 46133827 46133827 1 + G A UCEC 46133838 + 46133818 46133858 41 ATAGTCACCGCCAGAAGGAGCAGGATGTGGAGAAGGAGCTG ATAGTCACCACCAGAAGGAGCAGGATGTGGAGAAGGAGCTG < 41bp 1 0.765693348768763 1 0.589614748954773 experiment 0.468613302462473 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46133838 chr17:46133827 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_39864 0 0 1 0 2 NFE2L1 chr17:46133748 3'AG 46133748 Downstream 80bp
chr17 46133827 46133827 1 + G A UCEC 46133838 + 46133818 46133858 41 ATAGTCACCGCCAGAAGGAGCAGGATGTGGAGAAGGAGCTG ATAGTCACCACCAGAAGGAGCAGGATGTGGAGAAGGAGCTG < 41bp 1 0.765693348768763 1 0.589614748954773 experiment 0.468613302462473 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46133838 chr17:46133827 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_39864 0 0 1 0 2 NFE2L1 chr17:46133781 3'AG 46133781 Downstream 47bp
chr19 42398354 42398354 1 + C T UCEC 42398364 + 42398344 42398384 41 GACAAGAAGTCGGGGAGGAACTTCTTCCGGAAAAAGGTGCT GACAAGAAGTTGGGGAGGAACTTCTTCCGGAAAAAGGTGCT < 41bp 1 0.139099956382415 1 0.349216103553772 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42398364 chr19:42398354 nonsynonymous SNV 0.989 0 11 hm5C_associated_SNPs_39865 0 0 1 0 2 ARHGEF1 chr19:42398280 3'AG 42398280 Downstream 75bp
chr19 42398354 42398354 1 + C T UCEC 42398364 + 42398344 42398384 41 GACAAGAAGTCGGGGAGGAACTTCTTCCGGAAAAAGGTGCT GACAAGAAGTTGGGGAGGAACTTCTTCCGGAAAAAGGTGCT < 41bp 1 0.139099956382415 1 0.349216103553772 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42398364 chr19:42398354 nonsynonymous SNV 0.989 0 11 hm5C_associated_SNPs_39865 0 0 1 0 2 ARHGEF1 chr19:42398379 5'GT 42398379 Upstream 26bp
chr17 16332215 16332215 1 + G A UCEC 16332211 + 16332191 16332231 41 GTACCTGCCCCTGCTTGTGTCTGCGCTGGTGCTGGGCTGGC GTACCTGCCCCTGCTTGTGTCTGCACTGGTGCTGGGCTGGC < 41bp 1 0.785735642451475 1 0.867361545562744 experiment 0.42852871509705 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16332211 chr17:16332215 synonymous SNV . 0 25 hm5C_associated_SNPs_39866 0 0 0 0 2 TRPV2 chr17:16332131 3'AG 16332131 Downstream 85bp
chr17 16332215 16332215 1 + G A UCEC 16332211 + 16332191 16332231 41 GTACCTGCCCCTGCTTGTGTCTGCGCTGGTGCTGGGCTGGC GTACCTGCCCCTGCTTGTGTCTGCACTGGTGCTGGGCTGGC < 41bp 1 0.785735642451475 1 0.867361545562744 experiment 0.42852871509705 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16332211 chr17:16332215 synonymous SNV . 0 25 hm5C_associated_SNPs_39866 0 0 0 0 2 TRPV2 chr17:16332296 5'GT 16332296 Upstream 82bp
chr17 57743540 57743540 1 + G A UCEC 57743560 + 57743540 57743580 41 GCCCATCTGAAGGTCCTTTACAGACGCGGTTACTTGAGATG ACCCATCTGAAGGTCCTTTACAGACGCGGTTACTTGAGATG < 41bp 1 0.529292357303803 1 0.295281320810318 experiment 0.941415285392393 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57743560 chr17:57743540 nonsynonymous SNV 0.999 2 1 hm5C_associated_SNPs_39867 0 0 1 0 2 CLTC chr17:57743464 3'AG 57743464 Downstream 77bp
chr17 57743540 57743540 1 + G A UCEC 57743560 + 57743540 57743580 41 GCCCATCTGAAGGTCCTTTACAGACGCGGTTACTTGAGATG ACCCATCTGAAGGTCCTTTACAGACGCGGTTACTTGAGATG < 41bp 1 0.529292357303803 1 0.295281320810318 experiment 0.941415285392393 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57743560 chr17:57743540 nonsynonymous SNV 0.999 2 1 hm5C_associated_SNPs_39867 0 0 1 0 2 CLTC chr17:57743601 5'GT 57743601 Upstream 62bp
chr4 155665961 155665961 1 + C T UCEC 155665967 + 155665947 155665987 41 CTGTGGAACAACTGCGAGCACTTCGTGACCTACTGCAGATA CTGTGGAACAACTGTGAGCACTTCGTGACCTACTGCAGATA < 41bp 1 0.394418791509254 1 0.117913424968719 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRAT ENSG00000121207 CDS Human protein_coding chr4:155665967 chr4:155665961 synonymous SNV . 0 15 hm5C_associated_SNPs_39869 0 0 0 0 1 LRAT chr4:155666018 5'GT 155666018 Upstream 58bp
chr1 10332308 10332308 1 + A G UCEC 10332306 + 10332286 10332326 41 GTATTTATTTTAGGAAGGAGCAAATATTAATAAGTCTCTTA GTATTTATTTTAGGAAGGAGCAGATATTAATAAGTCTCTTA < 41bp 1 0.0605178372396724 1 0.376817852258682 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10332306 chr1:10332308 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_39870 0 0 1 2 2 KIF1B chr1:10332299 3'AG 10332299 Downstream 10bp
chr1 10332308 10332308 1 + A G UCEC 10332306 + 10332286 10332326 41 GTATTTATTTTAGGAAGGAGCAAATATTAATAAGTCTCTTA GTATTTATTTTAGGAAGGAGCAGATATTAATAAGTCTCTTA < 41bp 1 0.0605178372396724 1 0.376817852258682 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10332306 chr1:10332308 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_39870 0 0 1 2 2 KIF1B chr1:10332364 5'GT 10332364 Upstream 57bp
chr16 68331170 68331170 1 + T G UCEC 68331160 + 68331140 68331180 41 CTATCACCAGAGGCACCCAGCAGCTTTGCTTTTGTGTCCTG CTATCACCAGAGGCACCCAGCAGCTTTGCTGTTGTGTCCTG < 41bp 1 0.48689899649779 1 0.509121537208557 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC7A6 ENSG00000103064 CDS Human protein_coding chr16:68331160 chr16:68331170 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_39871 0 0 1 0 1 SLC7A6 chr16:68331137 3'AG 68331137 Downstream 34bp
chr3 119198923 119198923 1 + A G UCEC 119198909 + 119198889 119198929 41 TTGTTGAAGACATCAGAGTACCATGATATCATGTATCCTGC TTGTTGAAGACATCAGAGTACCATGATATCATGTGTCCTGC < 41bp 1 0.409963146352913 1 0.0632156729698181 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119198909 chr3:119198923 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_39872 0 0 0 0 2 POGLUT1 chr3:119198898 3'AG 119198898 Downstream 26bp
chr3 119198923 119198923 1 + A G UCEC 119198909 + 119198889 119198929 41 TTGTTGAAGACATCAGAGTACCATGATATCATGTATCCTGC TTGTTGAAGACATCAGAGTACCATGATATCATGTGTCCTGC < 41bp 1 0.409963146352913 1 0.0632156729698181 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119198909 chr3:119198923 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_39872 0 0 0 0 2 POGLUT1 chr3:119199019 5'GT 119199019 Upstream 97bp
chr15 64410388 64410388 1 + C A UCEC 64410406 + 64410386 64410426 41 TTCTCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCC TTATCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCC < 41bp 1 0.227124900198793 1 0.223765730857849 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410406 chr15:64410388 nonsynonymous SNV 0.968 1 3 hm5C_associated_SNPs_39873 0 0 1 0 2 SNX1 chr15:64410316 3'AG 64410316 Downstream 73bp
chr15 64410388 64410388 1 + C A UCEC 64410406 + 64410386 64410426 41 TTCTCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCC TTATCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCC < 41bp 1 0.227124900198793 1 0.223765730857849 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410406 chr15:64410388 nonsynonymous SNV 0.968 1 3 hm5C_associated_SNPs_39873 0 0 1 0 2 SNX1 chr15:64410443 5'GT 64410443 Upstream 56bp
chr2 99938453 99938453 1 - T A UCEC 99938444 - 99938424 99938464 41 GAAACTTTAGAATGGAGGCTCGGTTCTTCTGACATTCTTAA GAAACTTTAGATTGGAGGCTCGGTTCTTCTGACATTCTTAA < 41bp 1 0.237400649874581 1 0.0859892964363098 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TXNDC9 ENSG00000115514 CDS Human protein_coding chr2:99938444 chr2:99938453 nonsynonymous SNV 0.997 4 12 hm5C_associated_SNPs_39874 0 0 1 0 1 TXNDC9 chr2:99938418 5'GT 99938418 Upstream 36bp
chr16 2811602 2811602 1 + G A UCEC 2811603 + 2811583 2811623 41 CCCTCTCCGGAAAGGAGCAGCACAGGCCCAGAACCACCTGC CCCTCTCCGGAAAGGAGCAACACAGGCCCAGAACCACCTGC < 41bp 1 0.465420282723104 1 0.596922278404236 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2811603 chr16:2811602 nonsynonymous SNV 0.994 0 20 hm5C_associated_SNPs_39875 0 0 1 0 1 SRRM2 chr16:2811562 3'AG 2811562 Downstream 41bp
chr3 45557711 45557711 1 + C T UCEC 45557701 + 45557681 45557721 41 GTTGTGGAGCAGTATGGGATCGACACGATTCGGCTCTACAT GTTGTGGAGCAGTATGGGATCGACACGATTTGGCTCTACAT < 41bp 1 0.76344790735627 1 0.730009198188782 experiment 0.47310418528746 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LARS2 ENSG00000011376 CDS Human protein_coding chr3:45557701 chr3:45557711 nonsynonymous SNV 0.466 5 31 hm5C_associated_SNPs_39876 1 0 0 0 1 LARS2 chr3:45557768 5'GT 45557768 Upstream 58bp
chr7 135312785 135312785 1 + C A UCEC 135312770 + 135312750 135312790 41 TCATCCCTACCCCAGTGGATCGCTACCGCCAGATTCTCCTC TCATCCCTACCCCAGTGGATCGCTACCGCCAGATTATCCTC < 41bp 1 0.454079274263536 1 0.129653722047806 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135312770 chr7:135312785 nonsynonymous SNV 0.995 4 36 hm5C_associated_SNPs_39878 0 0 1 1 2 NUP205 chr7:135312721 3'AG 135312721 Downstream 65bp
chr7 135312785 135312785 1 + C A UCEC 135312770 + 135312750 135312790 41 TCATCCCTACCCCAGTGGATCGCTACCGCCAGATTCTCCTC TCATCCCTACCCCAGTGGATCGCTACCGCCAGATTATCCTC < 41bp 1 0.454079274263536 1 0.129653722047806 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135312770 chr7:135312785 nonsynonymous SNV 0.995 4 36 hm5C_associated_SNPs_39878 0 0 1 1 2 NUP205 chr7:135312859 5'GT 135312859 Upstream 75bp
chr2 60987393 60987393 1 + T G UCEC 60987390 + 60987370 60987410 41 AATTAATTGACGCCATGAAACCATTTGGAGTGTTTGAAGAT AATTAATTGACGCCATGAAACCAGTTGGAGTGTTTGAAGAT < 41bp 1 0.290536339566244 1 0.211196959018707 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLG ENSG00000115421 CDS Human protein_coding chr2:60987390 chr2:60987393 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_39880 0 0 1 0 1 PAPOLG chr2:60987430 5'GT 60987430 Upstream 38bp
chrX 69699063 69699063 1 + G A UCEC 69699058 + 69699038 69699078 41 GAACAAATGATGAACAGCAGCATGAGCTCTGGGTCTGGGTC GAACAAATGATGAACAGCAGCATGAACTCTGGGTCTGGGTC < 41bp 1 0.351438557572926 1 0.314038217067719 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DLG3 ENSG00000082458 CDS Human protein_coding chrX:69699058 chrX:69699063 nonsynonymous SNV 0.999 3 26 hm5C_associated_SNPs_39882 2 0 1 0 2 DLG3 chrX:69699000 3'AG 69699000 Downstream 64bp
chrX 69699063 69699063 1 + G A UCEC 69699058 + 69699038 69699078 41 GAACAAATGATGAACAGCAGCATGAGCTCTGGGTCTGGGTC GAACAAATGATGAACAGCAGCATGAACTCTGGGTCTGGGTC < 41bp 1 0.351438557572926 1 0.314038217067719 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DLG3 ENSG00000082458 CDS Human protein_coding chrX:69699058 chrX:69699063 nonsynonymous SNV 0.999 3 26 hm5C_associated_SNPs_39882 2 0 1 0 2 DLG3 chrX:69699114 5'GT 69699114 Upstream 52bp
chr15 43632484 43632484 1 + G T UCEC 43632491 + 43632471 43632511 41 AGATGTCATAAAAGAATTTGCAGATGACGGCGTCAAGTACC AGATGTCATAAAATAATTTGCAGATGACGGCGTCAAGTACC < 41bp 1 0.426643839627595 1 0.53181117773056 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ADAL ENSG00000168803 CDS Human protein_coding chr15:43632491 chr15:43632484 stopgain 1.000 1 14 hm5C_associated_SNPs_39884 0 0 1 0 1 ADAL chr15:43632550 5'GT 43632550 Upstream 67bp
chr13 113732686 113732686 1 + G A UCEC 113732702 + 113732682 113732722 41 CGGCGAGGCTCTGAGAACTCCAGCTCCGAGGGCGGTGCGCT CGGCAAGGCTCTGAGAACTCCAGCTCCGAGGGCGGTGCGCT < 41bp 1 0.310461294985887 1 0.409554779529572 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113732702 chr13:113732686 nonsynonymous SNV 0.096 2 5 hm5C_associated_SNPs_39885 0 0 1 0 2 MCF2L chr13:113732677 3'AG 113732677 Downstream 10bp
chr13 113732686 113732686 1 + G A UCEC 113732702 + 113732682 113732722 41 CGGCGAGGCTCTGAGAACTCCAGCTCCGAGGGCGGTGCGCT CGGCAAGGCTCTGAGAACTCCAGCTCCGAGGGCGGTGCGCT < 41bp 1 0.310461294985887 1 0.409554779529572 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113732702 chr13:113732686 nonsynonymous SNV 0.096 2 5 hm5C_associated_SNPs_39885 0 0 1 0 2 MCF2L chr13:113732750 5'GT 113732750 Upstream 65bp
chr15 91448699 91448699 1 + G T UCEC 91448697 + 91448677 91448717 41 CCATCTCCCCGCAGGACTGCCAGTTTGCTTTGGGGGGCCGG CCATCTCCCCGCAGGACTGCCATTTTGCTTTGGGGGGCCGG < 41bp 1 0.0719303220142403 1 0.0620226860046387 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91448697 chr15:91448699 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_39886 0 0 1 0 1 MAN2A2 chr15:91448738 5'GT 91448738 Upstream 40bp
chr17 40985593 40985593 1 + C A UCEC 40985592 + 40985572 40985612 41 TCAGGTCCCTCCGGCCCCCTCCCTGGAGTCCACAGCGCCTC TCAGGTCCCTCCGGCCCCCTCACTGGAGTCCACAGCGCCTC < 41bp 1 0.683369593857527 1 0.274249255657196 experiment 0.633260812284945 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSME3 ENSG00000131467 UTR5 Human protein_coding chr17:40985592 chr17:40985593 . . 0 22 hm5C_associated_SNPs_39887 0 0 1 0 1 PSME3 chr17:40985690 5'GT 40985690 Upstream 98bp
chr11 34969146 34969146 1 + A C UCEC 34969143 + 34969123 34969163 41 AAGTGATGATGGAATCTTGGCCAAAATCGTGGTAAGTTTTT AAGTGATGATGGAATCTTGGCCACAATCGTGGTAAGTTTTT < 41bp 1 0.208838957133369 1 0.0735926032066345 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PDHX ENSG00000110435 CDS Human protein_coding chr11:34969143 chr11:34969146 nonsynonymous SNV 0.971 3 24 hm5C_associated_SNPs_39888 0 0 1 0 2 PDHX chr11:34969053 3'AG 34969053 Downstream 94bp
chr11 34969146 34969146 1 + A C UCEC 34969143 + 34969123 34969163 41 AAGTGATGATGGAATCTTGGCCAAAATCGTGGTAAGTTTTT AAGTGATGATGGAATCTTGGCCACAATCGTGGTAAGTTTTT < 41bp 1 0.208838957133369 1 0.0735926032066345 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PDHX ENSG00000110435 CDS Human protein_coding chr11:34969143 chr11:34969146 nonsynonymous SNV 0.971 3 24 hm5C_associated_SNPs_39888 0 0 1 0 2 PDHX chr11:34969153 5'GT 34969153 Upstream 8bp
chr11 34969146 34969146 1 + A C UCEC 34969150 + 34969130 34969170 41 GATGGAATCTTGGCCAAAATCGTGGTAAGTTTTTATTTTAA GATGGAATCTTGGCCACAATCGTGGTAAGTTTTTATTTTAA < 41bp 1 0.663463223585425 1 0.939945220947266 experiment 0.673073552829151 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PDHX ENSG00000110435 CDS Human protein_coding chr11:34969150 chr11:34969146 nonsynonymous SNV 0.971 3 17 hm5C_associated_SNPs_39889 0 0 1 0 2 PDHX chr11:34969053 3'AG 34969053 Downstream 94bp
chr11 34969146 34969146 1 + A C UCEC 34969150 + 34969130 34969170 41 GATGGAATCTTGGCCAAAATCGTGGTAAGTTTTTATTTTAA GATGGAATCTTGGCCACAATCGTGGTAAGTTTTTATTTTAA < 41bp 1 0.663463223585425 1 0.939945220947266 experiment 0.673073552829151 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PDHX ENSG00000110435 CDS Human protein_coding chr11:34969150 chr11:34969146 nonsynonymous SNV 0.971 3 17 hm5C_associated_SNPs_39889 0 0 1 0 2 PDHX chr11:34969153 5'GT 34969153 Upstream 8bp
chr3 141595722 141595722 1 + G T UCEC 141595736 + 141595716 141595756 41 ACCGGAGAATTCCTGGGGCGCACCGCCAAGAGCTGGGGTGA ACCGGATAATTCCTGGGGCGCACCGCCAAGAGCTGGGGTGA < 41bp 1 0.637788948470541 1 0.120325952768326 experiment 0.724422103058918 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141595736 chr3:141595722 stopgain 0.419 1 7 hm5C_associated_SNPs_39890 0 0 1 0 1 ATP1B3 chr3:141595752 5'GT 141595752 Upstream 31bp
chr10 127529842 127529842 1 + G T UCEC 127529827 + 127529807 127529847 41 TGCTTCTATTCCGGCAGGAGCAGGGAAAACCTGAGGTGCTT TGCTTCTATTCCGGCAGGAGCAGGGAAAACCTGAGTTGCTT < 41bp 1 0.782650060989896 1 0.846566498279572 experiment 0.434699878020209 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCCIP ENSG00000107949 CDS Human protein_coding chr10:127529827 chr10:127529842 nonsynonymous SNV 0.000 0 36 hm5C_associated_SNPs_39891 0 0 1 0 2 BCCIP chr10:127529824 3'AG 127529824 Downstream 19bp
chr10 127529842 127529842 1 + G T UCEC 127529827 + 127529807 127529847 41 TGCTTCTATTCCGGCAGGAGCAGGGAAAACCTGAGGTGCTT TGCTTCTATTCCGGCAGGAGCAGGGAAAACCTGAGTTGCTT < 41bp 1 0.782650060989896 1 0.846566498279572 experiment 0.434699878020209 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCCIP ENSG00000107949 CDS Human protein_coding chr10:127529827 chr10:127529842 nonsynonymous SNV 0.000 0 36 hm5C_associated_SNPs_39891 0 0 1 0 2 BCCIP chr10:127529899 5'GT 127529899 Upstream 58bp
chr15 64429083 64429083 1 + G T UCEC 64429070 + 64429050 64429090 41 TGTCTCCTAGAAAGAGAAATCCAAGGACTTCAAGAACCACG TGTCTCCTAGAAAGAGAAATCCAAGGACTTCAATAACCACG < 41bp 1 0.155170613254055 1 0.377209514379501 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64429070 chr15:64429083 nonsynonymous SNV 0.992 3 34 hm5C_associated_SNPs_39893 0 0 1 0 2 SNX1 chr15:64429060 3'AG 64429060 Downstream 24bp
chr15 64429083 64429083 1 + G T UCEC 64429070 + 64429050 64429090 41 TGTCTCCTAGAAAGAGAAATCCAAGGACTTCAAGAACCACG TGTCTCCTAGAAAGAGAAATCCAAGGACTTCAATAACCACG < 41bp 1 0.155170613254055 1 0.377209514379501 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64429070 chr15:64429083 nonsynonymous SNV 0.992 3 34 hm5C_associated_SNPs_39893 0 0 1 0 2 SNX1 chr15:64429131 5'GT 64429131 Upstream 49bp
chr1 233489679 233489679 1 + G A UCEC 233489675 + 233489655 233489695 41 GCCCATTCCATCCACCTGCCCTGAGCCGTTTGCCAAGCTCA GCCCATTCCATCCACCTGCCCTGAACCGTTTGCCAAGCTCA < 41bp 1 0.478900253403973 1 0.197426319122314 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233489675 chr1:233489679 synonymous SNV . 0 25 hm5C_associated_SNPs_39894 0 0 1 0 1 MAP3K21 chr1:233489701 5'GT 233489701 Upstream 23bp
chr5 132427048 132427048 1 + G A UCEC 132427041 + 132427021 132427061 41 AAATGAGGAGCCAATGGAAACAGATCAGAATGCAAAGGAGG AAATGAGGAGCCAATGGAAACAGATCAAAATGCAAAGGAGG < 41bp 1 0.288227594805381 1 0.550541460514069 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132427041 chr5:132427048 synonymous SNV . 0 28 hm5C_associated_SNPs_39895 0 0 1 0 1 HSPA4 chr5:132427066 5'GT 132427066 Upstream 19bp
chr5 132427048 132427048 1 + G A UCEC 132427046 + 132427026 132427066 41 AGGAGCCAATGGAAACAGATCAGAATGCAAAGGAGGAAGAG AGGAGCCAATGGAAACAGATCAAAATGCAAAGGAGGAAGAG < 41bp 1 0.610801574231271 1 0.221104562282562 experiment 0.778396851537458 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132427046 chr5:132427048 synonymous SNV . 0 23 hm5C_associated_SNPs_39896 0 0 1 0 1 HSPA4 chr5:132427066 5'GT 132427066 Upstream 19bp
chr5 132427048 132427048 1 + G A UCEC 132427053 + 132427033 132427073 41 AATGGAAACAGATCAGAATGCAAAGGAGGAAGAGGTAATCT AATGGAAACAGATCAAAATGCAAAGGAGGAAGAGGTAATCT < 41bp 1 0.545325330821503 1 0.330204725265503 experiment 0.909349338356994 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132427053 chr5:132427048 synonymous SNV . 0 16 hm5C_associated_SNPs_39897 0 0 1 0 1 HSPA4 chr5:132427066 5'GT 132427066 Upstream 19bp
chr10 120867630 120867630 1 + T C UCEC 120867616 + 120867596 120867636 41 CCCTTTGTCTTTGGTCAGTACAGAAGAACATGGTTTTATAT CCCTTTGTCTTTGGTCAGTACAGAAGAACATGGTCTTATAT < 41bp 1 0.674608654515212 1 0.449964940547943 experiment 0.650782690969576 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM45A ENSG00000119979 CDS Human protein_coding chr10:120867616 chr10:120867630 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_39898 0 0 1 1 1 FAM45A chr10:120867676 5'GT 120867676 Upstream 47bp
chr1 26142120 26142120 1 + T G UCEC 26142138 + 26142118 26142158 41 TCTCATCCACCTTTGAAGACCCGTCCACGGCCACCTACATG TCGCATCCACCTTTGAAGACCCGTCCACGGCCACCTACATG < 41bp 1 0.0222194605834183 1 0.153045922517776 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26142138 chr1:26142120 nonsynonymous SNV 0.998 1 3 hm5C_associated_SNPs_39899 0 0 1 0 1 SELENON chr1:26142039 3'AG 26142039 Downstream 82bp
chr16 84872300 84872300 1 + C T UCEC 84872297 + 84872277 84872317 41 TCCTCATGCTGCACAACAAGCTTCGGGGCCAGGTGCAGCCT TCCTCATGCTGCACAACAAGCTTTGGGGCCAGGTGCAGCCT < 41bp 1 0.278195822908267 1 0.0568335652351379 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84872297 chr16:84872300 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_39900 0 0 0 0 1 CRISPLD2 chr16:84872341 5'GT 84872341 Upstream 42bp
chr19 7918174 7918174 1 + C T UCEC 7918189 + 7918169 7918209 41 GAGTACGCAGCCATGAAGAGCAAGGAGATGGAGGAGCAGAT GAGTATGCAGCCATGAAGAGCAAGGAGATGGAGGAGCAGAT < 41bp 1 0.321799516570627 1 0.538842082023621 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EVI5L ENSG00000142459 CDS Human protein_coding chr19:7918189 chr19:7918174 synonymous SNV . 0 6 hm5C_associated_SNPs_39901 0 0 0 0 2 EVI5L chr19:7918159 3'AG 7918159 Downstream 16bp
chr19 7918174 7918174 1 + C T UCEC 7918189 + 7918169 7918209 41 GAGTACGCAGCCATGAAGAGCAAGGAGATGGAGGAGCAGAT GAGTATGCAGCCATGAAGAGCAAGGAGATGGAGGAGCAGAT < 41bp 1 0.321799516570627 1 0.538842082023621 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EVI5L ENSG00000142459 CDS Human protein_coding chr19:7918189 chr19:7918174 synonymous SNV . 0 6 hm5C_associated_SNPs_39901 0 0 0 0 2 EVI5L chr19:7918219 5'GT 7918219 Upstream 46bp
chr2 233656064 233656064 1 + A C UCEC 233656051 + 233656031 233656071 41 ATCAGTCTCAGGAAGCATCACAGTTTGAGAGGAAAGATGAA ATCAGTCTCAGGAAGCATCACAGTTTGAGAGGACAGATGAA < 41bp 1 0.180529232049735 1 0.382205903530121 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233656051 chr2:233656064 nonsynonymous SNV 0.896 1 34 hm5C_associated_SNPs_39902 0 0 1 0 3 GIGYF2 chr2:233655968 3'AG 233655968 Downstream 97bp
chr2 233656064 233656064 1 + A C UCEC 233656051 + 233656031 233656071 41 ATCAGTCTCAGGAAGCATCACAGTTTGAGAGGAAAGATGAA ATCAGTCTCAGGAAGCATCACAGTTTGAGAGGACAGATGAA < 41bp 1 0.180529232049735 1 0.382205903530121 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233656051 chr2:233656064 nonsynonymous SNV 0.896 1 34 hm5C_associated_SNPs_39902 0 0 1 0 3 GIGYF2 chr2:233655971 3'AG 233655971 Downstream 94bp
chr2 233656064 233656064 1 + A C UCEC 233656051 + 233656031 233656071 41 ATCAGTCTCAGGAAGCATCACAGTTTGAGAGGAAAGATGAA ATCAGTCTCAGGAAGCATCACAGTTTGAGAGGACAGATGAA < 41bp 1 0.180529232049735 1 0.382205903530121 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233656051 chr2:233656064 nonsynonymous SNV 0.896 1 34 hm5C_associated_SNPs_39902 0 0 1 0 3 GIGYF2 chr2:233656156 5'GT 233656156 Upstream 93bp
chr19 17627005 17627005 1 + G A UCEC 17626993 + 17626973 17627013 41 TGGCTGCAGACGCATCTTCTCTCCAGACTGCCGATCCCAGA TGGCTGCAGACGCATCTTCTCTCCAGACTGCCAATCCCAGA < 41bp 1 0.784859347491117 1 0.873679161071777 experiment 0.430281305017767 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PGLS ENSG00000130313 CDS Human protein_coding chr19:17626993 chr19:17627005 synonymous SNV . 0 33 hm5C_associated_SNPs_39903 0 0 1 0 2 PGLS chr19:17626982 3'AG 17626982 Downstream 24bp
chr19 17627005 17627005 1 + G A UCEC 17626993 + 17626973 17627013 41 TGGCTGCAGACGCATCTTCTCTCCAGACTGCCGATCCCAGA TGGCTGCAGACGCATCTTCTCTCCAGACTGCCAATCCCAGA < 41bp 1 0.784859347491117 1 0.873679161071777 experiment 0.430281305017767 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PGLS ENSG00000130313 CDS Human protein_coding chr19:17626993 chr19:17627005 synonymous SNV . 0 33 hm5C_associated_SNPs_39903 0 0 1 0 2 PGLS chr19:17627089 5'GT 17627089 Upstream 85bp
chr17 65905780 65905780 1 + T G UCEC 65905785 + 65905765 65905805 41 AATAAAAATAGAGCCTGATTCTGAAAAAGATGAGGTAAAAG AATAAAAATAGAGCCGGATTCTGAAAAAGATGAGGTAAAAG < 41bp 1 0.453185524334119 1 0.577202260494232 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65905785 chr17:65905780 synonymous SNV . 0 16 hm5C_associated_SNPs_39904 0 0 1 0 2 BPTF chr17:65905698 3'AG 65905698 Downstream 83bp
chr17 65905780 65905780 1 + T G UCEC 65905785 + 65905765 65905805 41 AATAAAAATAGAGCCTGATTCTGAAAAAGATGAGGTAAAAG AATAAAAATAGAGCCGGATTCTGAAAAAGATGAGGTAAAAG < 41bp 1 0.453185524334119 1 0.577202260494232 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65905785 chr17:65905780 synonymous SNV . 0 16 hm5C_associated_SNPs_39904 0 0 1 0 2 BPTF chr17:65905877 5'GT 65905877 Upstream 98bp
chrX 51641229 51641229 1 + C T UCEC 51641235 + 51641215 51641255 41 AAGACACACCCAAGCTCGGTCTCCTCTTGGTGATTCTGGGT AAGACACACCCAAGTTCGGTCTCCTCTTGGTGATTCTGGGT < 41bp 1 0.1811170944123 1 0.459330290555954 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51641235 chrX:51641229 nonsynonymous SNV 0.998 2 15 hm5C_associated_SNPs_39905 0 0 1 0 1 MAGED1 chrX:51641210 3'AG 51641210 Downstream 20bp
chr17 78310129 78310129 1 + A G UCEC 78310125 + 78310105 78310145 41 TCAGTGCATTCATGAAGCATCTGAAAAAGCTGTGGAAGGCT TCAGTGCATTCATGAAGCATCTGAGAAAGCTGTGGAAGGCT < 41bp 1 0.107078227150972 1 0.186830013990402 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78310125 chr17:78310129 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_39906 0 0 1 0 1 RNF213 chr17:78310178 5'GT 78310178 Upstream 50bp
chr1 198231750 198231750 1 + G T UCEC 198231736 + 198231716 198231756 41 AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG AATGGATGCCAAAGCACGTGCTGATTGCATCAAATAAATAG < 41bp 1 0.186938725596926 1 0.126562803983688 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231736 chr1:198231750 stopgain 1.000 1 35 hm5C_associated_SNPs_39907 0 0 0 0 2 NEK7 chr1:198231705 3'AG 198231705 Downstream 46bp
chr1 198231750 198231750 1 + G T UCEC 198231736 + 198231716 198231756 41 AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG AATGGATGCCAAAGCACGTGCTGATTGCATCAAATAAATAG < 41bp 1 0.186938725596926 1 0.126562803983688 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231736 chr1:198231750 stopgain 1.000 1 35 hm5C_associated_SNPs_39907 0 0 0 0 2 NEK7 chr1:198231767 5'GT 198231767 Upstream 18bp
chr1 198231750 198231750 1 + G T UCEC 198231746 + 198231726 198231766 41 AAAGCACGTGCTGATTGCATCAAAGAAATAGATCTTCTTAA AAAGCACGTGCTGATTGCATCAAATAAATAGATCTTCTTAA < 41bp 1 0.185351351543147 1 0.383521407842636 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231746 chr1:198231750 stopgain 1.000 1 25 hm5C_associated_SNPs_39908 0 0 0 0 2 NEK7 chr1:198231705 3'AG 198231705 Downstream 46bp
chr1 198231750 198231750 1 + G T UCEC 198231746 + 198231726 198231766 41 AAAGCACGTGCTGATTGCATCAAAGAAATAGATCTTCTTAA AAAGCACGTGCTGATTGCATCAAATAAATAGATCTTCTTAA < 41bp 1 0.185351351543147 1 0.383521407842636 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231746 chr1:198231750 stopgain 1.000 1 25 hm5C_associated_SNPs_39908 0 0 0 0 2 NEK7 chr1:198231767 5'GT 198231767 Upstream 18bp
chr1 198231750 198231750 1 + G T UCEC 198231762 + 198231742 198231782 41 GCATCAAAGAAATAGATCTTCTTAAGGTAATTAATGAACTG GCATCAAATAAATAGATCTTCTTAAGGTAATTAATGAACTG < 41bp 1 0.406297270858848 1 0.167363405227661 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231762 chr1:198231750 stopgain 1.000 1 9 hm5C_associated_SNPs_39909 0 0 0 0 2 NEK7 chr1:198231705 3'AG 198231705 Downstream 46bp
chr1 198231750 198231750 1 + G T UCEC 198231762 + 198231742 198231782 41 GCATCAAAGAAATAGATCTTCTTAAGGTAATTAATGAACTG GCATCAAATAAATAGATCTTCTTAAGGTAATTAATGAACTG < 41bp 1 0.406297270858848 1 0.167363405227661 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231762 chr1:198231750 stopgain 1.000 1 9 hm5C_associated_SNPs_39909 0 0 0 0 2 NEK7 chr1:198231767 5'GT 198231767 Upstream 18bp
chr9 100757060 100757060 1 + A C UCEC 100757048 + 100757028 100757068 41 TTTCAAATCTCCCCAAGCTGCCTAAATTGAAAAAGGTAAGT TTTCAAATCTCCCCAAGCTGCCTAAATTGAAACAGGTAAGT < 41bp 1 0.111137039260412 1 0.0589461326599121 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100757048 chr9:100757060 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_39910 0 0 1 0 1 ANP32B chr9:100757062 5'GT 100757062 Upstream 3bp
chr4 126398357 126398357 1 + C A UCEC 126398352 + 126398332 126398372 41 AGAGTTACAGTTGGAGGTATCAGATCTCTAGAACCAATCCT AGAGTTACAGTTGGAGGTATCAGATATCTAGAACCAATCCT < 41bp 1 0.166433794247138 1 0.839367628097534 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126398352 chr4:126398357 nonsynonymous SNV 0.069 2 26 hm5C_associated_SNPs_39911 0 0 1 0 1 FAT4 chr4:126398310 3'AG 126398310 Downstream 48bp
chr2 242683190 242683190 1 + G A UCEC 242683180 + 242683160 242683200 41 CAACCAACGCTGGAGGCCTGCGGTTTCTTCGATATGGCTCA CAACCAACGCTGGAGGCCTGCGGTTTCTTCAATATGGCTCA < 41bp 1 0.372711450499031 1 0.672147452831268 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242683180 chr2:242683190 nonsynonymous SNV 0.081 3 31 hm5C_associated_SNPs_39912 0 0 1 0 1 D2HGDH chr2:242683230 5'GT 242683230 Upstream 41bp
chr8 28906493 28906493 1 + T C UCEC 28906477 + 28906457 28906497 41 TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGA TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCACGGGA < 41bp 1 0.047713749842657 1 0.141338497400284 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906477 chr8:28906493 synonymous SNV . 0 37 hm5C_associated_SNPs_39913 0 0 1 0 4 HMBOX1 chr8:28906471 3'AG 28906471 Downstream 23bp
chr8 28906493 28906493 1 + T C UCEC 28906477 + 28906457 28906497 41 TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGA TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCACGGGA < 41bp 1 0.047713749842657 1 0.141338497400284 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906477 chr8:28906493 synonymous SNV . 0 37 hm5C_associated_SNPs_39913 0 0 1 0 4 HMBOX1 chr8:28906474 3'AG 28906474 Downstream 20bp
chr8 28906493 28906493 1 + T C UCEC 28906477 + 28906457 28906497 41 TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGA TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCACGGGA < 41bp 1 0.047713749842657 1 0.141338497400284 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906477 chr8:28906493 synonymous SNV . 0 37 hm5C_associated_SNPs_39913 0 0 1 0 4 HMBOX1 chr8:28906477 3'AG 28906477 Downstream 17bp
chr8 28906493 28906493 1 + T C UCEC 28906477 + 28906457 28906497 41 TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGA TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCACGGGA < 41bp 1 0.047713749842657 1 0.141338497400284 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906477 chr8:28906493 synonymous SNV . 0 37 hm5C_associated_SNPs_39913 0 0 1 0 4 HMBOX1 chr8:28906565 5'GT 28906565 Upstream 73bp
chr8 28906493 28906493 1 + T C UCEC 28906481 + 28906461 28906501 41 TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATAGA TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCACGGGATAGA < 41bp 1 0.247863487470555 1 0.752012133598328 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906481 chr8:28906493 synonymous SNV . 0 33 hm5C_associated_SNPs_39914 0 0 1 0 4 HMBOX1 chr8:28906471 3'AG 28906471 Downstream 23bp
chr8 28906493 28906493 1 + T C UCEC 28906481 + 28906461 28906501 41 TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATAGA TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCACGGGATAGA < 41bp 1 0.247863487470555 1 0.752012133598328 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906481 chr8:28906493 synonymous SNV . 0 33 hm5C_associated_SNPs_39914 0 0 1 0 4 HMBOX1 chr8:28906474 3'AG 28906474 Downstream 20bp
chr8 28906493 28906493 1 + T C UCEC 28906481 + 28906461 28906501 41 TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATAGA TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCACGGGATAGA < 41bp 1 0.247863487470555 1 0.752012133598328 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906481 chr8:28906493 synonymous SNV . 0 33 hm5C_associated_SNPs_39914 0 0 1 0 4 HMBOX1 chr8:28906477 3'AG 28906477 Downstream 17bp
chr8 28906493 28906493 1 + T C UCEC 28906481 + 28906461 28906501 41 TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATAGA TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCACGGGATAGA < 41bp 1 0.247863487470555 1 0.752012133598328 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906481 chr8:28906493 synonymous SNV . 0 33 hm5C_associated_SNPs_39914 0 0 1 0 4 HMBOX1 chr8:28906565 5'GT 28906565 Upstream 73bp
chr8 28906493 28906493 1 + T C UCEC 28906512 + 28906492 28906532 41 ATGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT ACGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT < 41bp 1 0.558082188388269 1 0.458048641681671 experiment 0.883835623223462 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906512 chr8:28906493 synonymous SNV . 0 2 hm5C_associated_SNPs_39915 0 0 1 0 4 HMBOX1 chr8:28906471 3'AG 28906471 Downstream 23bp
chr8 28906493 28906493 1 + T C UCEC 28906512 + 28906492 28906532 41 ATGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT ACGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT < 41bp 1 0.558082188388269 1 0.458048641681671 experiment 0.883835623223462 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906512 chr8:28906493 synonymous SNV . 0 2 hm5C_associated_SNPs_39915 0 0 1 0 4 HMBOX1 chr8:28906474 3'AG 28906474 Downstream 20bp
chr8 28906493 28906493 1 + T C UCEC 28906512 + 28906492 28906532 41 ATGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT ACGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT < 41bp 1 0.558082188388269 1 0.458048641681671 experiment 0.883835623223462 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906512 chr8:28906493 synonymous SNV . 0 2 hm5C_associated_SNPs_39915 0 0 1 0 4 HMBOX1 chr8:28906477 3'AG 28906477 Downstream 17bp
chr8 28906493 28906493 1 + T C UCEC 28906512 + 28906492 28906532 41 ATGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT ACGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT < 41bp 1 0.558082188388269 1 0.458048641681671 experiment 0.883835623223462 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906512 chr8:28906493 synonymous SNV . 0 2 hm5C_associated_SNPs_39915 0 0 1 0 4 HMBOX1 chr8:28906565 5'GT 28906565 Upstream 73bp
chr12 104720158 104720158 1 + A C UCEC 104720169 + 104720149 104720189 41 GCTTGCACAAGAAAAATTGGCTTAGAAACCGTAGGGGTGAA GCTTGCACACGAAAAATTGGCTTAGAAACCGTAGGGGTGAA < 41bp 1 0.218456280853818 1 0.0522008240222931 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TXNRD1 ENSG00000198431 CDS Human protein_coding chr12:104720169 chr12:104720158 synonymous SNV . 0 10 hm5C_associated_SNPs_39916 0 0 1 0 2 TXNRD1 chr12:104720125 3'AG 104720125 Downstream 34bp
chr12 104720158 104720158 1 + A C UCEC 104720169 + 104720149 104720189 41 GCTTGCACAAGAAAAATTGGCTTAGAAACCGTAGGGGTGAA GCTTGCACACGAAAAATTGGCTTAGAAACCGTAGGGGTGAA < 41bp 1 0.218456280853818 1 0.0522008240222931 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TXNRD1 ENSG00000198431 CDS Human protein_coding chr12:104720169 chr12:104720158 synonymous SNV . 0 10 hm5C_associated_SNPs_39916 0 0 1 0 2 TXNRD1 chr12:104720201 5'GT 104720201 Upstream 44bp
chr7 55259436 55259436 1 + C T UCEC 55259432 + 55259412 55259452 41 GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGA GGCATGAACTACTTGGAGGACCGTTGCTTGGTGCACCGCGA < 41bp 1 0.109450323090619 1 0.29468047618866 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55259432 chr7:55259436 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_39917 0 0 1 0 1 EGFR chr7:55259412 3'AG 55259412 Downstream 25bp
chr7 139094332 139094332 1 + G T UCEC 139094319 + 139094299 139094339 41 TGTTTTTAAGAGAGTCGTAGCTGAGAAGCAGGAGAAAAGAA TGTTTTTAAGAGAGTCGTAGCTGAGAAGCAGGATAAAAGAA < 41bp 1 0.481540293517625 1 0.214548647403717 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094319 chr7:139094332 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_39918 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 24bp
chr7 139094332 139094332 1 + G T UCEC 139094319 + 139094299 139094339 41 TGTTTTTAAGAGAGTCGTAGCTGAGAAGCAGGAGAAAAGAA TGTTTTTAAGAGAGTCGTAGCTGAGAAGCAGGATAAAAGAA < 41bp 1 0.481540293517625 1 0.214548647403717 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094319 chr7:139094332 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_39918 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 69bp
chr7 139094332 139094332 1 + G T UCEC 139094341 + 139094321 139094361 41 GAGAAGCAGGAGAAAAGAAACCAGGAACGGCTGAAACGAAG GAGAAGCAGGATAAAAGAAACCAGGAACGGCTGAAACGAAG < 41bp 1 0.396196685411891 1 0.342038631439209 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094341 chr7:139094332 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_39919 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 24bp
chr7 139094332 139094332 1 + G T UCEC 139094341 + 139094321 139094361 41 GAGAAGCAGGAGAAAAGAAACCAGGAACGGCTGAAACGAAG GAGAAGCAGGATAAAAGAAACCAGGAACGGCTGAAACGAAG < 41bp 1 0.396196685411891 1 0.342038631439209 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094341 chr7:139094332 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_39919 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 69bp
chr7 139094332 139094332 1 + G T UCEC 139094348 + 139094328 139094368 41 AGGAGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAG AGGATAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAG < 41bp 1 0.477862129538113 1 0.331618845462799 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094348 chr7:139094332 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_39920 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 24bp
chr7 139094332 139094332 1 + G T UCEC 139094348 + 139094328 139094368 41 AGGAGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAG AGGATAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAG < 41bp 1 0.477862129538113 1 0.331618845462799 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094348 chr7:139094332 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_39920 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 69bp
chr7 139094332 139094332 1 + G T UCEC 139094351 + 139094331 139094371 41 AGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGA ATAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGA < 41bp 1 0.51222191901749 1 0.436938643455505 experiment 0.975556161965021 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094351 chr7:139094332 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_39921 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 24bp
chr7 139094332 139094332 1 + G T UCEC 139094351 + 139094331 139094371 41 AGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGA ATAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGA < 41bp 1 0.51222191901749 1 0.436938643455505 experiment 0.975556161965021 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094351 chr7:139094332 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_39921 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 69bp
chr4 1955184 1955184 1 + C T UCEC 1955190 + 1955170 1955210 41 GAGAGCCGAGGTTTCCGCTGCCCCCTCCACAGCTGTGTGAG GAGAGCCGAGGTTTTCGCTGCCCCCTCCACAGCTGTGTGAG < 41bp 1 0.0801534372392749 1 0.097093790769577 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NSD2 ENSG00000109685 CDS Human protein_coding chr4:1955190 chr4:1955184 synonymous SNV . 0 15 hm5C_associated_SNPs_39923 0 0 1 0 1 NSD2 chr4:1955251 5'GT 1955251 Upstream 68bp
chr4 1955184 1955184 1 + C T UCEC 1955199 + 1955179 1955219 41 GGTTTCCGCTGCCCCCTCCACAGCTGTGTGAGCTGCCATGC GGTTTTCGCTGCCCCCTCCACAGCTGTGTGAGCTGCCATGC < 41bp 1 0.665492206637195 1 0.21914342045784 experiment 0.669015586725609 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD2 ENSG00000109685 CDS Human protein_coding chr4:1955199 chr4:1955184 synonymous SNV . 0 6 hm5C_associated_SNPs_39924 0 0 1 0 1 NSD2 chr4:1955251 5'GT 1955251 Upstream 68bp
chr1 32502610 32502610 1 + C T UCEC 32502598 + 32502578 32502618 41 CCTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCT CCTCTCGTGGACGTGGGGTGCCAGTGAGAGGCTGGGGAGCT < 41bp 1 0.585556438381511 1 0.420644879341125 experiment 0.828887123236978 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502598 chr1:32502610 nonsynonymous SNV 0.954 1 33 hm5C_associated_SNPs_39925 0 0 1 0 2 KHDRBS1 chr1:32502511 3'AG 32502511 Downstream 100bp
chr1 32502610 32502610 1 + C T UCEC 32502598 + 32502578 32502618 41 CCTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCT CCTCTCGTGGACGTGGGGTGCCAGTGAGAGGCTGGGGAGCT < 41bp 1 0.585556438381511 1 0.420644879341125 experiment 0.828887123236978 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502598 chr1:32502610 nonsynonymous SNV 0.954 1 33 hm5C_associated_SNPs_39925 0 0 1 0 2 KHDRBS1 chr1:32502644 5'GT 32502644 Upstream 35bp
chr5 148743697 148743697 1 + C T UCEC 148743717 + 148743697 148743737 41 CGCCTCTGGTGGCACTATGGCATCAGCTTCCTGAGGCTGCA TGCCTCTGGTGGCACTATGGCATCAGCTTCCTGAGGCTGCA < 41bp 1 0.521998364431788 1 0.143512070178986 experiment 0.956003271136424 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCYOX1L ENSG00000145882 CDS Human protein_coding chr5:148743717 chr5:148743697 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_39926 0 0 0 0 2 PCYOX1L chr5:148743599 3'AG 148743599 Downstream 99bp
chr5 148743697 148743697 1 + C T UCEC 148743717 + 148743697 148743737 41 CGCCTCTGGTGGCACTATGGCATCAGCTTCCTGAGGCTGCA TGCCTCTGGTGGCACTATGGCATCAGCTTCCTGAGGCTGCA < 41bp 1 0.521998364431788 1 0.143512070178986 experiment 0.956003271136424 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCYOX1L ENSG00000145882 CDS Human protein_coding chr5:148743717 chr5:148743697 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_39926 0 0 0 0 2 PCYOX1L chr5:148743773 5'GT 148743773 Upstream 77bp
chr11 120099614 120099614 1 + C A UCEC 120099596 + 120099576 120099616 41 GGTGTGGACAGTTCTGTGTTCGAGGCTCTGCCCAAGGCCTC GGTGTGGACAGTTCTGTGTTCGAGGCTCTGCCCAAGGCATC < 41bp 1 0.780206028578593 1 0.8901287317276 experiment 0.439587942842814 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control OAF ENSG00000184232 CDS Human protein_coding chr11:120099596 chr11:120099614 synonymous SNV . 0 39 hm5C_associated_SNPs_39927 0 0 1 0 1 OAF chr11:120099577 3'AG 120099577 Downstream 38bp
chr17 14095347 14095347 1 + C T UCEC 14095330 + 14095310 14095350 41 TTGCTAGCTGTGTCCTTTGCCACTTGTTGTGCTGTTCCGGG TTGCTAGCTGTGTCCTTTGCCACTTGTTGTGCTGTTCTGGG < 41bp 1 0.319817849283682 1 0.831805825233459 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control COX10 ENSG00000006695 CDS Human protein_coding chr17:14095330 chr17:14095347 nonsynonymous SNV 0.544 2 38 hm5C_associated_SNPs_39928 0 0 1 0 1 COX10 chr17:14095306 3'AG 14095306 Downstream 42bp
chr1 116206829 116206829 1 + C T UCEC 116206847 + 116206827 116206867 41 CACGCTGCAGGTGGTCCGCTCCACCGATGGCGAGTCCCGCT CATGCTGCAGGTGGTCCGCTCCACCGATGGCGAGTCCCGCT < 41bp 1 0.226337092335943 1 0.079109400510788 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VANGL1 ENSG00000173218 CDS Human protein_coding chr1:116206847 chr1:116206829 nonsynonymous SNV 0.957 2 3 hm5C_associated_SNPs_39929 0 0 1 0 1 VANGL1 chr1:116206889 5'GT 116206889 Upstream 61bp
chr1 183086474 183086474 1 + G A UCEC 183086473 + 183086453 183086493 41 AGATGAGGATGGGTGGCGTGCGGAACAGAGAGATGGCTCTG AGATGAGGATGGGTGGCGTGCAGAACAGAGAGATGGCTCTG < 41bp 1 0.713075106758926 1 0.709771513938904 experiment 0.573849786482147 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183086473 chr1:183086474 synonymous SNV . 0 22 hm5C_associated_SNPs_39930 0 0 1 0 1 LAMC1 chr1:183086455 3'AG 183086455 Downstream 20bp
chr7 100610312 100610312 1 + G A UCEC 100610328 + 100610308 100610348 41 CAGTGTGAGCCCTGCGGGGCCCCTTCACCACCCCCTCCGCC CAGTATGAGCCCTGCGGGGCCCCTTCACCACCCCCTCCGCC < 41bp 1 0.0658320671697633 1 0.0794663429260254 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MUC3A ENSG00000169894 CDS Human protein_coding chr7:100610328 chr7:100610312 synonymous SNV . 0 5 hm5C_associated_SNPs_39931 0 0 0 0 1 MUC3A chr7:100610274 3'AG 100610274 Downstream 39bp
chr2 234360619 234360619 1 + C T UCEC 234360615 + 234360595 234360635 41 GTATCTCCTTTACAGATGTCCGGGCTGGAATGTCTGGTTCC GTATCTCCTTTACAGATGTCCGGGTTGGAATGTCTGGTTCC < 41bp 1 0.443823871533813 1 0.67577201128006 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKD ENSG00000077044 CDS Human protein_coding chr2:234360615 chr2:234360619 nonsynonymous SNV 0.982 1 25 hm5C_associated_SNPs_39933 0 0 0 0 2 DGKD chr2:234360610 3'AG 234360610 Downstream 10bp
chr2 234360619 234360619 1 + C T UCEC 234360615 + 234360595 234360635 41 GTATCTCCTTTACAGATGTCCGGGCTGGAATGTCTGGTTCC GTATCTCCTTTACAGATGTCCGGGTTGGAATGTCTGGTTCC < 41bp 1 0.443823871533813 1 0.67577201128006 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKD ENSG00000077044 CDS Human protein_coding chr2:234360615 chr2:234360619 nonsynonymous SNV 0.982 1 25 hm5C_associated_SNPs_39933 0 0 0 0 2 DGKD chr2:234360706 5'GT 234360706 Upstream 88bp
chr2 113322018 113322018 1 + T A UCEC 113321998 + 113321978 113322018 41 TACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGT TACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGA < 41bp 1 0.161344731078832 1 0.414184749126434 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113321998 chr2:113322018 nonsynonymous SNV 0.997 2 41 hm5C_associated_SNPs_39934 0 0 1 0 2 POLR1B chr2:113321943 3'AG 113321943 Downstream 76bp
chr2 113322018 113322018 1 + T A UCEC 113321998 + 113321978 113322018 41 TACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGT TACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGA < 41bp 1 0.161344731078832 1 0.414184749126434 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113321998 chr2:113322018 nonsynonymous SNV 0.997 2 41 hm5C_associated_SNPs_39934 0 0 1 0 2 POLR1B chr2:113322076 5'GT 113322076 Upstream 59bp
chr2 113322018 113322018 1 + T A UCEC 113321999 + 113321979 113322019 41 ACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGTT ACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGAT < 41bp 1 0.642519109240154 1 0.2641341984272 experiment 0.714961781519692 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113321999 chr2:113322018 nonsynonymous SNV 0.997 2 40 hm5C_associated_SNPs_39935 0 0 1 0 2 POLR1B chr2:113321943 3'AG 113321943 Downstream 76bp
chr2 113322018 113322018 1 + T A UCEC 113321999 + 113321979 113322019 41 ACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGTT ACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGAT < 41bp 1 0.642519109240154 1 0.2641341984272 experiment 0.714961781519692 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113321999 chr2:113322018 nonsynonymous SNV 0.997 2 40 hm5C_associated_SNPs_39935 0 0 1 0 2 POLR1B chr2:113322076 5'GT 113322076 Upstream 59bp
chr6 36442598 36442598 1 + A G UCEC 36442596 + 36442576 36442616 41 TGACTATGCCTCTCAGCCAGCAAATCTTCAGTTCCCTCACA TGACTATGCCTCTCAGCCAGCAGATCTTCAGTTCCCTCACA < 41bp 1 0.262770669419617 1 0.688372850418091 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KCTD20 ENSG00000112078 CDS Human protein_coding chr6:36442596 chr6:36442598 nonsynonymous SNV 0.988 0 23 hm5C_associated_SNPs_39939 0 0 1 0 1 KCTD20 chr6:36442566 3'AG 36442566 Downstream 33bp
chr10 135209683 135209683 1 + G A UCEC 135209670 + 135209650 135209690 41 TACCTTAATTTTGCCACATCCCACTTTCAGGCCGCAACCCT TACCTTAATTTTGCCACATCCCACTTTCAGGCCACAACCCT < 41bp 1 0.0760437695671427 1 0.177619963884354 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTG1 ENSG00000148824;ENSG00000254536 CDS Human other chr10:135209670 chr10:135209683 nonsynonymous SNV 0.996 0 34 hm5C_associated_SNPs_39943 0 0 1 0 1 MTG1 chr10:135209771 5'GT 135209771 Upstream 89bp
chr1 64095669 64095669 1 + G T UCEC 64095685 + 64095665 64095705 41 TGAAGAATATGCAGTTTGCCCTGACCTGAAAGTAGACCTTG TGAATAATATGCAGTTTGCCCTGACCTGAAAGTAGACCTTG < 41bp 1 0.209185813589553 1 0.0311912894248962 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PGM1 ENSG00000079739 CDS Human protein_coding chr1:64095685 chr1:64095669 stopgain 1.000 1 5 hm5C_associated_SNPs_39944 0 0 1 0 1 PGM1 chr1:64095613 3'AG 64095613 Downstream 57bp
chr1 109441605 109441605 1 + G A UCEC 109441598 + 109441578 109441618 41 ATTTCTTGGTGAATTTGAAACTGCCTCGGAATACTACAAGT ATTTCTTGGTGAATTTGAAACTGCCTCAGAATACTACAAGT < 41bp 1 0.283529249804509 1 0.344171106815338 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GPSM2 ENSG00000121957 CDS Human protein_coding chr1:109441598 chr1:109441605 synonymous SNV . 0 28 hm5C_associated_SNPs_39945 0 0 1 0 1 GPSM2 chr1:109441616 5'GT 109441616 Upstream 12bp
chr12 124144432 124144432 1 + C T UCEC 124144415 + 124144395 124144435 41 AGTTCATGTTGACTACAGGGCTGCTTGCTTCTGTCATCGAA AGTTCATGTTGACTACAGGGCTGCTTGCTTCTGTCATTGAA < 41bp 1 0.347777003365242 1 0.071196973323822 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2H3 ENSG00000111358 CDS Human protein_coding chr12:124144415 chr12:124144432 stopgain 1.000 1 38 hm5C_associated_SNPs_39946 0 0 1 0 2 GTF2H3 chr12:124144342 3'AG 124144342 Downstream 91bp
chr12 124144432 124144432 1 + C T UCEC 124144415 + 124144395 124144435 41 AGTTCATGTTGACTACAGGGCTGCTTGCTTCTGTCATCGAA AGTTCATGTTGACTACAGGGCTGCTTGCTTCTGTCATTGAA < 41bp 1 0.347777003365242 1 0.071196973323822 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2H3 ENSG00000111358 CDS Human protein_coding chr12:124144415 chr12:124144432 stopgain 1.000 1 38 hm5C_associated_SNPs_39946 0 0 1 0 2 GTF2H3 chr12:124144477 5'GT 124144477 Upstream 46bp
chr6 31593337 31593337 1 + G A UCEC 31593332 + 31593312 31593352 41 GTCATGATCCCCGGGGTGGGCTACAGCCTTCAGGCCCACCC GTCATGATCCCCGGGGTGGGCTACAACCTTCAGGCCCACCC < 41bp 1 0.643198300717224 1 0.467625737190247 experiment 0.713603398565553 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593332 chr6:31593337 synonymous SNV . 0 26 hm5C_associated_SNPs_39949 0 0 1 0 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 52bp
chr6 31593337 31593337 1 + G A UCEC 31593346 + 31593326 31593366 41 GGTGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTA GGTGGGCTACAACCTTCAGGCCCACCCCAGTTCCCTCCCTA < 41bp 1 0.200009788502788 1 0.0725703537464142 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593346 chr6:31593337 synonymous SNV . 0 12 hm5C_associated_SNPs_39950 0 0 1 0 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 52bp
chr6 31593337 31593337 1 + G A UCEC 31593347 + 31593327 31593367 41 GTGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTAC GTGGGCTACAACCTTCAGGCCCACCCCAGTTCCCTCCCTAC < 41bp 1 0.146524113125069 1 0.0756620466709137 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593347 chr6:31593337 synonymous SNV . 0 11 hm5C_associated_SNPs_39951 0 0 1 0 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 52bp
chr6 31593337 31593337 1 + G A UCEC 31593348 + 31593328 31593368 41 TGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACC TGGGCTACAACCTTCAGGCCCACCCCAGTTCCCTCCCTACC < 41bp 1 0.239399962358275 1 0.0508480072021484 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593348 chr6:31593337 synonymous SNV . 0 10 hm5C_associated_SNPs_39952 0 0 1 0 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 52bp
chr6 31593337 31593337 1 + G A UCEC 31593350 + 31593330 31593370 41 GGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGC GGCTACAACCTTCAGGCCCACCCCAGTTCCCTCCCTACCGC < 41bp 1 0.528054435344127 1 0.31787121295929 experiment 0.943891129311746 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593350 chr6:31593337 synonymous SNV . 0 8 hm5C_associated_SNPs_39953 0 0 1 0 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 52bp
chr6 31593337 31593337 1 + G A UCEC 31593351 + 31593331 31593371 41 GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCG GCTACAACCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCG < 41bp 1 0.381488151554292 1 0.105764150619507 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593351 chr6:31593337 synonymous SNV . 0 7 hm5C_associated_SNPs_39954 0 0 1 0 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 52bp
chr6 31593337 31593337 1 + G A UCEC 31593352 + 31593332 31593372 41 CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGG CTACAACCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGG < 41bp 1 0.346217782405377 1 0.179176479578018 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593352 chr6:31593337 synonymous SNV . 0 6 hm5C_associated_SNPs_39955 0 0 1 0 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 52bp
chr6 31593337 31593337 1 + G A UCEC 31593353 + 31593333 31593373 41 TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGGA TACAACCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGGA < 41bp 1 0.299685181702659 1 0.444451123476028 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593353 chr6:31593337 synonymous SNV . 0 5 hm5C_associated_SNPs_39956 0 0 1 0 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 52bp
chr19 41111046 41111046 1 + G T UCEC 41111043 + 41111023 41111063 41 GTTCTGCCAGTTGCACTCCTCGGGCGCCCGGCCCCCGGCCC GTTCTGCCAGTTGCACTCCTCGGTCGCCCGGCCCCCGGCCC < 41bp 1 0.526355766854163 1 0.842467546463013 experiment 0.947288466291673 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41111043 chr19:41111046 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_39959 0 0 1 0 1 LTBP4 chr19:41111132 5'GT 41111132 Upstream 87bp
chr15 36984339 36984339 1 + G A UCEC 36984350 + 36984330 36984370 41 ATTGTGAACGACTGCTGTTACGGACCACTAGTGGACTGCAT ATTGTGAACAACTGCTGTTACGGACCACTAGTGGACTGCAT < 41bp 1 0.441392725445278 1 0.86359030008316 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36984350 chr15:36984339 nonsynonymous SNV 0.963 4 10 hm5C_associated_SNPs_39960 0 0 0 0 2 C15orf41 chr15:36984327 3'AG 36984327 Downstream 13bp
chr15 36984339 36984339 1 + G A UCEC 36984350 + 36984330 36984370 41 ATTGTGAACGACTGCTGTTACGGACCACTAGTGGACTGCAT ATTGTGAACAACTGCTGTTACGGACCACTAGTGGACTGCAT < 41bp 1 0.441392725445278 1 0.86359030008316 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36984350 chr15:36984339 nonsynonymous SNV 0.963 4 10 hm5C_associated_SNPs_39960 0 0 0 0 2 C15orf41 chr15:36984376 5'GT 36984376 Upstream 38bp
chr2 55056509 55056509 1 + G T UCEC 55056514 + 55056494 55056534 41 ATGTATGCTTGTGAAGAAGGCTTTGCCACTGGTGGGCGAGA ATGTATGCTTGTGAATAAGGCTTTGCCACTGGTGGGCGAGA < 41bp 1 0.0345260221536628 1 0.0865615606307983 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EML6 ENSG00000214595 CDS Human protein_coding chr2:55056514 chr2:55056509 stopgain 1.000 0 16 hm5C_associated_SNPs_39961 0 0 1 0 1 EML6 chr2:55056479 3'AG 55056479 Downstream 31bp
chr10 122625211 122625211 1 + C T UCEC 122625218 + 122625198 122625238 41 AACTTTACGTGTTCGAAGATCTTATAATAACATTTTTACCA AACTTTACGTGTTTGAAGATCTTATAATAACATTTTTACCA < 41bp 1 0.0642153631101732 1 0.086569756269455 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122625218 chr10:122625211 stopgain 0.999 1 14 hm5C_associated_SNPs_39962 0 0 1 0 2 WDR11 chr10:122625142 3'AG 122625142 Downstream 70bp
chr10 122625211 122625211 1 + C T UCEC 122625218 + 122625198 122625238 41 AACTTTACGTGTTCGAAGATCTTATAATAACATTTTTACCA AACTTTACGTGTTTGAAGATCTTATAATAACATTTTTACCA < 41bp 1 0.0642153631101732 1 0.086569756269455 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122625218 chr10:122625211 stopgain 0.999 1 14 hm5C_associated_SNPs_39962 0 0 1 0 2 WDR11 chr10:122625256 5'GT 122625256 Upstream 46bp
chr10 122625211 122625211 1 + C T UCEC 122625228 + 122625208 122625248 41 GTTCGAAGATCTTATAATAACATTTTTACCACTTCAAATGA GTTTGAAGATCTTATAATAACATTTTTACCACTTCAAATGA < 41bp 1 0.108403943708614 1 0.0874392986297607 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122625228 chr10:122625211 stopgain 0.999 1 4 hm5C_associated_SNPs_39963 0 0 1 0 2 WDR11 chr10:122625142 3'AG 122625142 Downstream 70bp
chr10 122625211 122625211 1 + C T UCEC 122625228 + 122625208 122625248 41 GTTCGAAGATCTTATAATAACATTTTTACCACTTCAAATGA GTTTGAAGATCTTATAATAACATTTTTACCACTTCAAATGA < 41bp 1 0.108403943708614 1 0.0874392986297607 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122625228 chr10:122625211 stopgain 0.999 1 4 hm5C_associated_SNPs_39963 0 0 1 0 2 WDR11 chr10:122625256 5'GT 122625256 Upstream 46bp
chr17 7160312 7160312 1 + G A UCEC 7160303 + 7160283 7160323 41 ACCCTGGGCGGTACCATGGGCCAGGCCTCGGCCCACATCCT ACCCTGGGCGGTACCATGGGCCAGGCCTCAGCCCACATCCT < 41bp 1 0.464515427796405 1 0.199491888284683 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160303 chr17:7160312 synonymous SNV . 0 30 hm5C_associated_SNPs_39964 0 0 1 0 1 ELP5 chr17:7160357 5'GT 7160357 Upstream 46bp
chr17 7160312 7160312 1 + G A UCEC 7160304 + 7160284 7160324 41 CCCTGGGCGGTACCATGGGCCAGGCCTCGGCCCACATCCTG CCCTGGGCGGTACCATGGGCCAGGCCTCAGCCCACATCCTG < 41bp 1 0.706437323764336 1 0.843673706054688 experiment 0.587125352471329 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160304 chr17:7160312 synonymous SNV . 0 29 hm5C_associated_SNPs_39965 0 0 1 0 1 ELP5 chr17:7160357 5'GT 7160357 Upstream 46bp
chr17 7160312 7160312 1 + G A UCEC 7160314 + 7160294 7160334 41 TACCATGGGCCAGGCCTCGGCCCACATCCTGTGTCGGAGGC TACCATGGGCCAGGCCTCAGCCCACATCCTGTGTCGGAGGC < 41bp 1 0.307364594475444 1 0.568678677082062 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160314 chr17:7160312 synonymous SNV . 0 19 hm5C_associated_SNPs_39966 0 0 1 0 1 ELP5 chr17:7160357 5'GT 7160357 Upstream 46bp
chr17 7160312 7160312 1 + G A UCEC 7160315 + 7160295 7160335 41 ACCATGGGCCAGGCCTCGGCCCACATCCTGTGTCGGAGGCC ACCATGGGCCAGGCCTCAGCCCACATCCTGTGTCGGAGGCC < 41bp 1 0.631013727314452 1 0.666959524154663 experiment 0.737972545371096 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160315 chr17:7160312 synonymous SNV . 0 18 hm5C_associated_SNPs_39967 0 0 1 0 1 ELP5 chr17:7160357 5'GT 7160357 Upstream 46bp
chr17 7160312 7160312 1 + G A UCEC 7160316 + 7160296 7160336 41 CCATGGGCCAGGCCTCGGCCCACATCCTGTGTCGGAGGCCC CCATGGGCCAGGCCTCAGCCCACATCCTGTGTCGGAGGCCC < 41bp 1 0.426346359520165 1 0.242062509059906 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160316 chr17:7160312 synonymous SNV . 0 17 hm5C_associated_SNPs_39968 0 0 1 0 1 ELP5 chr17:7160357 5'GT 7160357 Upstream 46bp
chr7 157000233 157000233 1 + C T UCEC 157000240 + 157000220 157000260 41 ATAACGAATTCTTCGGTGATCCCATAGAAGGTAAGGATTTT ATAACGAATTCTTTGGTGATCCCATAGAAGGTAAGGATTTT < 41bp 1 0.0413697956419609 1 0.112869411706924 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE3C ENSG00000009335 CDS Human protein_coding chr7:157000240 chr7:157000233 synonymous SNV . 0 14 hm5C_associated_SNPs_39969 0 0 1 0 1 UBE3C chr7:157000249 5'GT 157000249 Upstream 17bp
chr12 22214321 22214321 1 + G T UCEC 22214315 + 22214295 22214335 41 ACATTTATGTATCAGGAGACCAAAAAGAAATAATATCTTAT ACATTTATGTATCAGGAGACCAAAAATAAATAATATCTTAT < 41bp 1 0.419575696565756 1 0.421809434890747 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22214315 chr12:22214321 stopgain 1.000 1 27 hm5C_associated_SNPs_39970 0 0 1 0 1 CMAS chr12:22214386 5'GT 22214386 Upstream 66bp
chrX 107842013 107842013 1 + G A UCEC 107842027 + 107842007 107842047 41 CCTATGGGTCCCCCTGGTTTCGGCCCTCCAGGCCCAGTAGG CCTATGAGTCCCCCTGGTTTCGGCCCTCCAGGCCCAGTAGG < 41bp 1 0.488512204820758 1 0.532953500747681 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107842027 chrX:107842013 nonsynonymous SNV 0.775 5 7 hm5C_associated_SNPs_39971 0 0 1 0 1 COL4A5 chrX:107842100 5'GT 107842100 Upstream 88bp
chr2 118582183 118582183 1 + C T UCEC 118582181 + 118582161 118582201 41 GCTCTTTTCTGCCACCCAAACTCGAAAAGTTGAAGACCTGG GCTCTTTTCTGCCACCCAAACTTGAAAAGTTGAAGACCTGG < 41bp 1 0.668230153974341 1 0.248898893594742 experiment 0.663539692051319 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118582181 chr2:118582183 stopgain 1.000 1 23 hm5C_associated_SNPs_39972 0 0 1 0 1 DDX18 chr2:118582145 3'AG 118582145 Downstream 39bp
chr7 2406205 2406205 1 + G A UCEC 2406225 + 2406205 2406245 41 GCTTAGCATCTATGAAACTCCTGTAAGTGGCCTCAGTGATG ACTTAGCATCTATGAAACTCCTGTAAGTGGCCTCAGTGATG < 41bp 1 0.479297751873811 1 0.0820305943489075 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2406225 chr7:2406205 synonymous SNV . 0 1 hm5C_associated_SNPs_39973 0 0 1 0 2 EIF3B chr7:2406160 3'AG 2406160 Downstream 46bp
chr7 2406205 2406205 1 + G A UCEC 2406225 + 2406205 2406245 41 GCTTAGCATCTATGAAACTCCTGTAAGTGGCCTCAGTGATG ACTTAGCATCTATGAAACTCCTGTAAGTGGCCTCAGTGATG < 41bp 1 0.479297751873811 1 0.0820305943489075 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2406225 chr7:2406205 synonymous SNV . 0 1 hm5C_associated_SNPs_39973 0 0 1 0 2 EIF3B chr7:2406226 5'GT 2406226 Upstream 22bp
chr11 73075569 73075569 1 + T C UCEC 73075552 + 73075532 73075572 41 ACCTTGGGCACCCAGGGGAGCCCCATCACCAAGATGGTATC ACCTTGGGCACCCAGGGGAGCCCCATCACCAAGATGGCATC < 41bp 1 0.188409426044071 1 0.0581503510475159 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73075552 chr11:73075569 nonsynonymous SNV 0.999 2 38 hm5C_associated_SNPs_39975 0 0 1 0 2 ARHGEF17 chr11:73075497 3'AG 73075497 Downstream 73bp
chr11 73075569 73075569 1 + T C UCEC 73075552 + 73075532 73075572 41 ACCTTGGGCACCCAGGGGAGCCCCATCACCAAGATGGTATC ACCTTGGGCACCCAGGGGAGCCCCATCACCAAGATGGCATC < 41bp 1 0.188409426044071 1 0.0581503510475159 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73075552 chr11:73075569 nonsynonymous SNV 0.999 2 38 hm5C_associated_SNPs_39975 0 0 1 0 2 ARHGEF17 chr11:73075645 5'GT 73075645 Upstream 77bp
chr5 54635872 54635872 1 + C T UCEC 54635889 + 54635869 54635909 41 CAGCGTGTAATATTTACCAGCCCAATTAAGGCTCTGAGTAA CAGTGTGTAATATTTACCAGCCCAATTAAGGCTCTGAGTAA < 41bp 1 0.337351330526221 1 0.296898245811462 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54635889 chr5:54635872 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_39977 0 0 1 0 1 SKIV2L2 chr5:54635838 3'AG 54635838 Downstream 35bp
chr5 43173452 43173452 1 + G T UCEC 43173455 + 43173435 43173475 41 AATGTCCAAATTGTCATGAACGATTTGCTAGAAATAGCACT AATGTCCAAATTGTCATTAACGATTTGCTAGAAATAGCACT < 41bp 1 0.158295522847456 1 0.149490505456924 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZNF131 ENSG00000172262 CDS Human protein_coding chr5:43173455 chr5:43173452 stopgain 1.000 1 18 hm5C_associated_SNPs_39979 0 0 1 1 2 ZNF131 chr5:43173420 3'AG 43173420 Downstream 33bp
chr5 43173452 43173452 1 + G T UCEC 43173455 + 43173435 43173475 41 AATGTCCAAATTGTCATGAACGATTTGCTAGAAATAGCACT AATGTCCAAATTGTCATTAACGATTTGCTAGAAATAGCACT < 41bp 1 0.158295522847456 1 0.149490505456924 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZNF131 ENSG00000172262 CDS Human protein_coding chr5:43173455 chr5:43173452 stopgain 1.000 1 18 hm5C_associated_SNPs_39979 0 0 1 1 2 ZNF131 chr5:43173550 5'GT 43173550 Upstream 99bp
chr11 57574416 57574416 1 + G A UCEC 57574432 + 57574412 57574452 41 AAACGATACAGTGGATTTCCCTAAAAGAACGAGTCCAGCTC AAACAATACAGTGGATTTCCCTAAAAGAACGAGTCCAGCTC < 41bp 1 0.655008385226158 1 0.411131262779236 experiment 0.689983229547683 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57574432 chr11:57574416 nonsynonymous SNV 0.994 3 5 hm5C_associated_SNPs_39980 0 0 1 0 2 CTNND1 chr11:57574387 3'AG 57574387 Downstream 30bp
chr11 57574416 57574416 1 + G A UCEC 57574432 + 57574412 57574452 41 AAACGATACAGTGGATTTCCCTAAAAGAACGAGTCCAGCTC AAACAATACAGTGGATTTCCCTAAAAGAACGAGTCCAGCTC < 41bp 1 0.655008385226158 1 0.411131262779236 experiment 0.689983229547683 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57574432 chr11:57574416 nonsynonymous SNV 0.994 3 5 hm5C_associated_SNPs_39980 0 0 1 0 2 CTNND1 chr11:57574455 5'GT 57574455 Upstream 40bp
chr1 70716103 70716103 1 + G T UCEC 70716113 + 70716093 70716133 41 GGATGAAAGAGAACGATCAACAAGCAAGAAGAAGAAGAGTA GGATGAAAGATAACGATCAACAAGCAAGAAGAAGAAGAGTA < 41bp 1 0.457920416194403 1 0.247153460979462 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70716113 chr1:70716103 stopgain 0.998 1 11 hm5C_associated_SNPs_39981 0 0 1 0 1 SRSF11 chr1:70716048 3'AG 70716048 Downstream 56bp
chr11 107968468 107968468 1 + G A UCEC 107968473 + 107968453 107968493 41 TTCTCAGTGAACCAGGAGTTCAGTTTAATGTAAGCTCGTTA TTCTCAGTGAACCAGAAGTTCAGTTTAATGTAAGCTCGTTA < 41bp 1 0.240801651518644 1 0.0982439517974854 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL5 ENSG00000166266 CDS Human protein_coding chr11:107968473 chr11:107968468 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_39982 0 0 1 0 1 CUL5 chr11:107968481 5'GT 107968481 Upstream 14bp
chr9 124534954 124534954 1 + C T UCEC 124534965 + 124534945 124534985 41 TCACAAGGTCCTCCGGGGTCCAGCCCTCACCTGCCCGCAGC TCACAAGGTTCTCCGGGGTCCAGCCCTCACCTGCCCGCAGC < 41bp 1 0.247049882811912 1 0.188832968473434 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124534965 chr9:124534954 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_39983 0 0 1 0 2 DAB2IP chr9:124534886 3'AG 124534886 Downstream 69bp
chr9 124534954 124534954 1 + C T UCEC 124534965 + 124534945 124534985 41 TCACAAGGTCCTCCGGGGTCCAGCCCTCACCTGCCCGCAGC TCACAAGGTTCTCCGGGGTCCAGCCCTCACCTGCCCGCAGC < 41bp 1 0.247049882811912 1 0.188832968473434 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124534965 chr9:124534954 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_39983 0 0 1 0 2 DAB2IP chr9:124534952 3'AG 124534952 Downstream 3bp
chr1 10689618 10689618 1 + G A UCEC 10689614 + 10689594 10689634 41 GTTCCCTCCATCCCCATCAGCCCCGAAGATCCCCTCCTGGC GTTCCCTCCATCCCCATCAGCCCCAAAGATCCCCTCCTGGC < 41bp 1 0.437459326117455 1 0.0320783257484436 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PEX14 ENSG00000142655 CDS Human protein_coding chr1:10689614 chr1:10689618 synonymous SNV . 0 25 hm5C_associated_SNPs_39984 0 0 1 0 1 PEX14 chr1:10689588 3'AG 10689588 Downstream 31bp
chr14 21967267 21967267 1 - A G UCEC 21967278 - 21967258 21967298 41 TAGTTTTTATTTCCTAGGTTCGTTCCACCAGTCATAAACCA TAGTTTTTATTTCCTAGGTTCGTTCCACCAGCCATAAACCA < 41bp 1 0.0184371604590145 1 0.0443174839019775 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control METTL3 ENSG00000165819 CDS Human protein_coding chr14:21967278 chr14:21967267 synonymous SNV . 0 32 hm5C_associated_SNPs_39985 0 0 1 0 2 METTL3 chr14:21967169 5'GT 21967169 Upstream 99bp
chr14 21967267 21967267 1 - A G UCEC 21967278 - 21967258 21967298 41 TAGTTTTTATTTCCTAGGTTCGTTCCACCAGTCATAAACCA TAGTTTTTATTTCCTAGGTTCGTTCCACCAGCCATAAACCA < 41bp 1 0.0184371604590145 1 0.0443174839019775 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control METTL3 ENSG00000165819 CDS Human protein_coding chr14:21967278 chr14:21967267 synonymous SNV . 0 32 hm5C_associated_SNPs_39985 0 0 1 0 2 METTL3 chr14:21967281 3'AG 21967281 Downstream 15bp
chr12 79689903 79689903 1 + A G UCEC 79689904 + 79689884 79689924 41 CGCCTTGGACATGGGGGGCACATCTGATCCTTACGTGAAAG CGCCTTGGACATGGGGGGCGCATCTGATCCTTACGTGAAAG < 41bp 1 0.17434199911574 1 0.214029848575592 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYT1 ENSG00000067715 CDS Human protein_coding chr12:79689904 chr12:79689903 nonsynonymous SNV 0.976 2 20 hm5C_associated_SNPs_39986 0 0 0 0 1 SYT1 chr12:79689849 3'AG 79689849 Downstream 55bp
chr19 36128138 36128138 1 + C T UCEC 36128142 + 36128122 36128162 41 GCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCCAAGGTGAT GCCTTCAGCCGCTTCCTATCCTTCCTTAAGGCCAAGGTGAT < 41bp 1 0.212971706334154 1 0.464177012443542 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36128142 chr19:36128138 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_39987 0 0 1 0 1 RBM42 chr19:36128060 3'AG 36128060 Downstream 79bp
chr1 151633285 151633285 1 + C T UCEC 151633305 + 151633285 151633325 41 CGAGTAATTGGTGAGAGTGACATCATGCAGGAATTCCTATC TGAGTAATTGGTGAGAGTGACATCATGCAGGAATTCCTATC < 41bp 1 0.336131794818876 1 0.223774641752243 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX27 ENSG00000143376 CDS Human protein_coding chr1:151633305 chr1:151633285 stopgain 1.000 1 1 hm5C_associated_SNPs_39988 0 0 1 0 1 SNX27 chr1:151633338 5'GT 151633338 Upstream 54bp
chr7 142459721 142459721 1 + C T UCEC 142459703 + 142459683 142459723 41 TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGA TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATATGA < 41bp 1 0.303572028089793 1 0.0890495479106903 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459703 chr7:142459721 synonymous SNV . 0 39 hm5C_associated_SNPs_39989 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 97bp
chr7 142459721 142459721 1 + C T UCEC 142459706 + 142459686 142459726 41 ATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAG ATCAATGCAGCCAAGATCATCCGCCACCCCCAATATGACAG < 41bp 1 0.252329250525133 1 0.256583750247955 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459706 chr7:142459721 synonymous SNV . 0 36 hm5C_associated_SNPs_39990 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 97bp
chr7 142459721 142459721 1 + C T UCEC 142459707 + 142459687 142459727 41 TCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGG TCAATGCAGCCAAGATCATCCGCCACCCCCAATATGACAGG < 41bp 1 0.772260450345689 1 0.443488985300064 experiment 0.455479099308622 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459707 chr7:142459721 synonymous SNV . 0 35 hm5C_associated_SNPs_39991 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 97bp
chr7 142459721 142459721 1 + C T UCEC 142459709 + 142459689 142459729 41 AATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA AATGCAGCCAAGATCATCCGCCACCCCCAATATGACAGGAA < 41bp 1 0.109116467828648 1 0.145428329706192 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459709 chr7:142459721 synonymous SNV . 0 33 hm5C_associated_SNPs_39992 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 97bp
chr7 142459721 142459721 1 + C T UCEC 142459710 + 142459690 142459730 41 ATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG ATGCAGCCAAGATCATCCGCCACCCCCAATATGACAGGAAG < 41bp 1 0.201714357252847 1 0.173593252897263 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459710 chr7:142459721 synonymous SNV . 0 32 hm5C_associated_SNPs_39993 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 97bp
chr7 142459721 142459721 1 + C T UCEC 142459712 + 142459692 142459732 41 GCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC GCAGCCAAGATCATCCGCCACCCCCAATATGACAGGAAGAC < 41bp 1 0.126760287578989 1 0.0870113968849182 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459712 chr7:142459721 synonymous SNV . 0 30 hm5C_associated_SNPs_39994 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 97bp
chr7 142459721 142459721 1 + C T UCEC 142459713 + 142459693 142459733 41 CAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT CAGCCAAGATCATCCGCCACCCCCAATATGACAGGAAGACT < 41bp 1 0.473388662633787 1 0.450977772474289 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459713 chr7:142459721 synonymous SNV . 0 29 hm5C_associated_SNPs_39995 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 97bp
chr7 142459721 142459721 1 + C T UCEC 142459714 + 142459694 142459734 41 AGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC AGCCAAGATCATCCGCCACCCCCAATATGACAGGAAGACTC < 41bp 1 0.461663972924709 1 0.189132750034332 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459714 chr7:142459721 synonymous SNV . 0 28 hm5C_associated_SNPs_39996 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 97bp
chr7 142459721 142459721 1 + C T UCEC 142459715 + 142459695 142459735 41 GCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCT GCCAAGATCATCCGCCACCCCCAATATGACAGGAAGACTCT < 41bp 1 0.289313012919925 1 0.166017591953278 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459715 chr7:142459721 synonymous SNV . 0 27 hm5C_associated_SNPs_39997 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 97bp
chr7 142459721 142459721 1 + C T UCEC 142459716 + 142459696 142459736 41 CCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCTG CCAAGATCATCCGCCACCCCCAATATGACAGGAAGACTCTG < 41bp 1 0.513347958432811 1 0.267535895109177 experiment 0.973304083134378 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459716 chr7:142459721 synonymous SNV . 0 26 hm5C_associated_SNPs_39998 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 97bp
chr7 142459721 142459721 1 + C T UCEC 142459732 + 142459712 142459752 41 CCCCCAATACGACAGGAAGACTCTGAACAATGACATCATGT CCCCCAATATGACAGGAAGACTCTGAACAATGACATCATGT < 41bp 1 0.528745086855572 1 0.208154439926147 experiment 0.942509826288856 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459732 chr7:142459721 synonymous SNV . 0 10 hm5C_associated_SNPs_39999 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 97bp
chr7 142459721 142459721 1 + C T UCEC 142459739 + 142459719 142459759 41 TACGACAGGAAGACTCTGAACAATGACATCATGTTAATCAA TATGACAGGAAGACTCTGAACAATGACATCATGTTAATCAA < 41bp 1 0.525744940258132 1 0.188565582036972 experiment 0.948510119483737 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459739 chr7:142459721 synonymous SNV . 0 3 hm5C_associated_SNPs_40000 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 97bp
chr9 101765842 101765842 1 + G A UCEC 101765832 + 101765812 101765852 41 CACCGGGGGACCAACCCTCTCTATGTCCACGGAGAACCCAG CACCGGGGGACCAACCCTCTCTATGTCCACAGAGAACCCAG < 41bp 1 0.345144468752123 1 0.157158762216568 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765832 chr9:101765842 synonymous SNV . 0 31 hm5C_associated_SNPs_40001 0 0 0 0 1 COL15A1 chr9:101765869 5'GT 101765869 Upstream 28bp
chrX 105891582 105891582 1 + G T UCEC 105891593 + 105891573 105891613 41 ACAAACAAAGGGAATTAAACCGGGCATGCCAAGCATCTTCA ACAAACAAATGGAATTAAACCGGGCATGCCAAGCATCTTCA < 41bp 1 0.678556229652789 1 0.72043913602829 experiment 0.642887540694422 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105891593 chrX:105891582 nonsynonymous SNV 0.167 0 10 hm5C_associated_SNPs_40002 0 0 0 0 1 CXorf57 chrX:105891616 5'GT 105891616 Upstream 35bp
chr2 174128576 174128576 1 + C T UCEC 174128572 + 174128552 174128592 41 AAGCAGTCCAACTTGCCATTCAGACATTATTCACCAATTCA AAGCAGTCCAACTTGCCATTCAGATATTATTCACCAATTCA < 41bp 1 0.118510184492701 1 0.253975450992584 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAP3K20 ENSG00000091436 CDS Human protein_coding chr2:174128572 chr2:174128576 nonsynonymous SNV 0.716 2 25 hm5C_associated_SNPs_40003 0 0 0 0 1 MAP3K20 chr2:174128623 5'GT 174128623 Upstream 48bp
chr10 115661458 115661458 1 + T C UCEC 115661457 + 115661437 115661477 41 AGGAACCTGCCTTAGGTTTGCTGGAAGTGGAAATGAAGAGA AGGAACCTGCCTTAGGTTTGCCGGAAGTGGAAATGAAGAGA < 41bp 1 0.634848362491766 1 0.56138813495636 experiment 0.730303275016468 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115661457 chr10:115661458 synonymous SNV . 0 22 hm5C_associated_SNPs_40004 0 0 1 1 1 NHLRC2 chr10:115661425 3'AG 115661425 Downstream 34bp
chr7 65419154 65419154 1 + T C UCEC 65419170 + 65419150 65419190 41 TACTTTGTGCTGAAGGAGTTCTGCATCATCTGCATCGTCAC TACTCTGTGCTGAAGGAGTTCTGCATCATCTGCATCGTCAC < 41bp 1 0.799929872737852 1 0.815039873123169 experiment 0.400140254524295 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VKORC1L1 ENSG00000196715 CDS Human protein_coding chr7:65419170 chr7:65419154 nonsynonymous SNV 1.000 5 5 hm5C_associated_SNPs_40005 0 0 1 0 1 VKORC1L1 chr7:65419061 3'AG 65419061 Downstream 94bp
chr22 38321725 38321725 1 + G T UCEC 38321720 + 38321700 38321740 41 TCACGCTGGTGCAGGCAGAACCAAAGAAGAAGCCAGCCCCA TCACGCTGGTGCAGGCAGAACCAAATAAGAAGCCAGCCCCA < 41bp 1 0.47164526619133 1 0.495800524950027 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38321720 chr22:38321725 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_40006 0 0 0 0 1 MICALL1 chr22:38321668 3'AG 38321668 Downstream 58bp
chr22 32445982 32445982 1 + G A UCEC 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCAAAGTATGGT < 41bp 1 0.256020300883613 1 0.353711128234863 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445982 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_40007 0 0 0 0 2 SLC5A1 chr22:32445930 3'AG 32445930 Downstream 53bp
chr22 32445982 32445982 1 + G A UCEC 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCAAAGTATGGT < 41bp 1 0.256020300883613 1 0.353711128234863 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445982 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_40007 0 0 0 0 2 SLC5A1 chr22:32446001 5'GT 32446001 Upstream 20bp
chr15 100215641 100215641 1 + T C UCEC 100215637 + 100215617 100215657 41 CACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGTC CACTACAGACCTCACAGTGCCAAACGGAGCTGGAAGCAGTC < 41bp 1 0.228056247851763 1 0.394102782011032 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEF2A ENSG00000068305 CDS Human protein_coding chr15:100215637 chr15:100215641 synonymous SNV . 0 25 hm5C_associated_SNPs_40008 0 0 1 0 2 MEF2A chr15:100215604 3'AG 100215604 Downstream 38bp
chr15 100215641 100215641 1 + T C UCEC 100215637 + 100215617 100215657 41 CACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGTC CACTACAGACCTCACAGTGCCAAACGGAGCTGGAAGCAGTC < 41bp 1 0.228056247851763 1 0.394102782011032 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEF2A ENSG00000068305 CDS Human protein_coding chr15:100215637 chr15:100215641 synonymous SNV . 0 25 hm5C_associated_SNPs_40008 0 0 1 0 2 MEF2A chr15:100215663 5'GT 100215663 Upstream 23bp
chr6 32944207 32944207 1 + T C UCEC 32944227 + 32944207 32944247 41 TTACTGCAGCTCCTCCAGCCCAGCCCCTTGCCAAGGTATGA CTACTGCAGCTCCTCCAGCCCAGCCCCTTGCCAAGGTATGA < 41bp 1 0.299433056218877 1 0.153890311717987 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32944227 chr6:32944207 nonsynonymous SNV 0.985 1 1 hm5C_associated_SNPs_40009 0 0 1 0 1 BRD2 chr6:32944241 5'GT 32944241 Upstream 35bp
chr11 107966313 107966313 1 + C T UCEC 107966308 + 107966288 107966328 41 ATTTGGAGGTAACCACGTTTCAGCTCGCTGTATTGTTTGCA ATTTGGAGGTAACCACGTTTCAGCTTGCTGTATTGTTTGCA < 41bp 1 0.572668751561296 1 0.691697359085083 experiment 0.854662496877407 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL5 ENSG00000166266 CDS Human protein_coding chr11:107966308 chr11:107966313 synonymous SNV . 0 26 hm5C_associated_SNPs_40010 0 0 1 0 1 CUL5 chr11:107966257 3'AG 107966257 Downstream 57bp
chr12 21205120 21205120 1 + T A UCEC 21205114 + 21205094 21205134 41 GATGAAAGTCAATGGGAACCCGTCTGTGGAAACAATGGAAT GATGAAAGTCAATGGGAACCCGTCTGAGGAAACAATGGAAT < 41bp 1 0.380799705426679 1 0.161033987998962 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21205114 chr12:21205120 stopgain 0.704 1 27 hm5C_associated_SNPs_40012 0 0 0 0 2 SLCO1B7 chr12:21205030 3'AG 21205030 Downstream 91bp
chr12 21205120 21205120 1 + T A UCEC 21205114 + 21205094 21205134 41 GATGAAAGTCAATGGGAACCCGTCTGTGGAAACAATGGAAT GATGAAAGTCAATGGGAACCCGTCTGAGGAAACAATGGAAT < 41bp 1 0.380799705426679 1 0.161033987998962 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21205114 chr12:21205120 stopgain 0.704 1 27 hm5C_associated_SNPs_40012 0 0 0 0 2 SLCO1B7 chr12:21205195 5'GT 21205195 Upstream 76bp
chr17 33310496 33310496 1 + G A UCEC 33310485 + 33310465 33310505 41 AGAGCGGGCCCGGGCCACCACAAAAAAAATCGAGGACCTCA AGAGCGGGCCCGGGCCACCACAAAAAAAATCAAGGACCTCA < 41bp 1 0.689880932357017 1 0.404021143913269 experiment 0.620238135285966 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33310485 chr17:33310496 nonsynonymous SNV 0.989 4 32 hm5C_associated_SNPs_40013 0 0 1 0 1 LIG3 chr17:33310571 5'GT 33310571 Upstream 76bp
chrX 9652146 9652146 1 + G T UCEC 9652130 + 9652110 9652150 41 GGATTGAGAGCCACATCAGCCAGTCCAACATCAATGGGACG GGATTGAGAGCCACATCAGCCAGTCCAACATCAATGTGACG < 41bp 1 0.0871668281727135 1 0.506738543510437 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBL1X ENSG00000101849 CDS Human protein_coding chrX:9652130 chrX:9652146 nonsynonymous SNV 0.993 4 37 hm5C_associated_SNPs_40014 0 0 0 0 2 TBL1X chrX:9652083 3'AG 9652083 Downstream 64bp
chrX 9652146 9652146 1 + G T UCEC 9652130 + 9652110 9652150 41 GGATTGAGAGCCACATCAGCCAGTCCAACATCAATGGGACG GGATTGAGAGCCACATCAGCCAGTCCAACATCAATGTGACG < 41bp 1 0.0871668281727135 1 0.506738543510437 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBL1X ENSG00000101849 CDS Human protein_coding chrX:9652130 chrX:9652146 nonsynonymous SNV 0.993 4 37 hm5C_associated_SNPs_40014 0 0 0 0 2 TBL1X chrX:9652228 5'GT 9652228 Upstream 83bp
chr7 98591327 98591327 1 + G T UCEC 98591325 + 98591305 98591345 41 CCCTGGAAGGCATCGTCGATCAGATGGTCTGGTTCAGAGAA CCCTGGAAGGCATCGTCGATCATATGGTCTGGTTCAGAGAA < 41bp 1 0.10495017516553 1 0.113931477069855 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98591325 chr7:98591327 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_40016 0 0 1 0 1 TRRAP chr7:98591360 5'GT 98591360 Upstream 34bp
chr7 70252238 70252238 1 + G T UCEC 70252228 + 70252208 70252248 41 GTTCGGCCACAAGGATGGCCCCAGTGTGCAGAACTTTAGCA GTTCGGCCACAAGGATGGCCCCAGTGTGCATAACTTTAGCA < 41bp 1 0.141753503900069 1 0.0702724158763885 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:70252228 chr7:70252238 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_40017 0 0 1 0 1 AUTS2 chr7:70252195 3'AG 70252195 Downstream 44bp
chr19 4323369 4323369 1 + G A UCEC 4323383 + 4323363 4323403 41 ATGCCCGCACCAAACAAGTGCTGCACACTTTCAAGACCAGG ATGCCCACACCAAACAAGTGCTGCACACTTTCAAGACCAGG < 41bp 1 0.35781160725152 1 0.149095118045807 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FSD1 ENSG00000105255 CDS Human protein_coding chr19:4323383 chr19:4323369 nonsynonymous SNV 0.988 1 7 hm5C_associated_SNPs_40018 0 0 1 0 2 FSD1 chr19:4323345 3'AG 4323345 Downstream 25bp
chr19 4323369 4323369 1 + G A UCEC 4323383 + 4323363 4323403 41 ATGCCCGCACCAAACAAGTGCTGCACACTTTCAAGACCAGG ATGCCCACACCAAACAAGTGCTGCACACTTTCAAGACCAGG < 41bp 1 0.35781160725152 1 0.149095118045807 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FSD1 ENSG00000105255 CDS Human protein_coding chr19:4323383 chr19:4323369 nonsynonymous SNV 0.988 1 7 hm5C_associated_SNPs_40018 0 0 1 0 2 FSD1 chr19:4323433 5'GT 4323433 Upstream 65bp
chr5 32093051 32093051 1 + G T UCEC 32093044 + 32093024 32093064 41 TTCTAGTCTCAGCGGGGGACCAGCAAAGATTACAGTCTGTT TTCTAGTCTCAGCGGGGGACCAGCAAATATTACAGTCTGTT < 41bp 1 0.127904649273238 1 0.548010587692261 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32093044 chr5:32093051 nonsynonymous SNV 0.997 2 28 hm5C_associated_SNPs_40019 0 0 0 0 2 PDZD2 chr5:32093013 3'AG 32093013 Downstream 39bp
chr5 32093051 32093051 1 + G T UCEC 32093044 + 32093024 32093064 41 TTCTAGTCTCAGCGGGGGACCAGCAAAGATTACAGTCTGTT TTCTAGTCTCAGCGGGGGACCAGCAAATATTACAGTCTGTT < 41bp 1 0.127904649273238 1 0.548010587692261 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32093044 chr5:32093051 nonsynonymous SNV 0.997 2 28 hm5C_associated_SNPs_40019 0 0 0 0 2 PDZD2 chr5:32093130 5'GT 32093130 Upstream 80bp
chr12 105543490 105543490 1 + G A UCEC 105543489 + 105543469 105543509 41 CCAGATTGATTAAAGATATTCGATTTTTCAGGGAAATTAAG CCAGATTGATTAAAGATATTCAATTTTTCAGGGAAATTAAG < 41bp 1 0.123908646380462 1 0.0995604395866394 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105543489 chr12:105543490 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_40020 0 0 1 0 2 WASHC4 chr12:105543393 3'AG 105543393 Downstream 98bp
chr12 105543490 105543490 1 + G A UCEC 105543489 + 105543469 105543509 41 CCAGATTGATTAAAGATATTCGATTTTTCAGGGAAATTAAG CCAGATTGATTAAAGATATTCAATTTTTCAGGGAAATTAAG < 41bp 1 0.123908646380462 1 0.0995604395866394 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105543489 chr12:105543490 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_40020 0 0 1 0 2 WASHC4 chr12:105543527 5'GT 105543527 Upstream 38bp
chr20 4679897 4679897 1 + C A UCEC 4679908 + 4679888 4679928 41 ATGCTGGTTCTCTTTGTGGCCACATGGAGTGACCTGGGCCT ATGCTGGTTATCTTTGTGGCCACATGGAGTGACCTGGGCCT < 41bp 1 0.571011221539479 1 0.581954121589661 experiment 0.857977556921041 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRNP ENSG00000171867 CDS Human protein_coding chr20:4679908 chr20:4679897 nonsynonymous SNV 0.778 2 10 hm5C_associated_SNPs_40021 0 0 1 0 1 PRNP chr20:4679862 3'AG 4679862 Downstream 36bp
chr2 179257222 179257222 1 + G T UCEC 179257242 + 179257222 179257262 41 GATCTCCTTCCACCAACAGACGCCCGGTTCCGGCCAGATCA TATCTCCTTCCACCAACAGACGCCCGGTTCCGGCCAGATCA < 41bp 1 0.241125640437144 1 0.127392739057541 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179257242 chr2:179257222 nonsynonymous SNV 0.997 3 1 hm5C_associated_SNPs_40022 0 0 0 0 2 OSBPL6 chr2:179257139 3'AG 179257139 Downstream 84bp
chr2 179257222 179257222 1 + G T UCEC 179257242 + 179257222 179257262 41 GATCTCCTTCCACCAACAGACGCCCGGTTCCGGCCAGATCA TATCTCCTTCCACCAACAGACGCCCGGTTCCGGCCAGATCA < 41bp 1 0.241125640437144 1 0.127392739057541 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179257242 chr2:179257222 nonsynonymous SNV 0.997 3 1 hm5C_associated_SNPs_40022 0 0 0 0 2 OSBPL6 chr2:179257265 5'GT 179257265 Upstream 44bp
chr9 103008912 103008912 1 + G C UCEC 103008902 + 103008882 103008922 41 TCAAGTTTTCTTACAGGAAACGGTTAAAGTGTTTTTAAAAC TCAAGTTTTCTTACAGGAAACGGTTAAAGTCTTTTTAAAAC < 41bp 1 0.0965579226250704 1 0.442181408405304 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INVS ENSG00000119509 CDS Human protein_coding chr9:103008902 chr9:103008912 synonymous SNV . 0 31 hm5C_associated_SNPs_40023 0 0 0 0 2 INVS chr9:103008887 3'AG 103008887 Downstream 26bp
chr9 103008912 103008912 1 + G C UCEC 103008902 + 103008882 103008922 41 TCAAGTTTTCTTACAGGAAACGGTTAAAGTGTTTTTAAAAC TCAAGTTTTCTTACAGGAAACGGTTAAAGTCTTTTTAAAAC < 41bp 1 0.0965579226250704 1 0.442181408405304 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INVS ENSG00000119509 CDS Human protein_coding chr9:103008902 chr9:103008912 synonymous SNV . 0 31 hm5C_associated_SNPs_40023 0 0 0 0 2 INVS chr9:103008898 3'AG 103008898 Downstream 15bp
chr5 134099668 134099668 1 + G T UCEC 134099676 + 134099656 134099696 41 CCTCAGACAAAAGAAGTAAACGTGGAGATGACAGACGGTCT CCTCAGACAAAATAAGTAAACGTGGAGATGACAGACGGTCT < 41bp 1 0.707040126173564 1 0.575419545173645 experiment 0.585919747652871 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DDX46 ENSG00000145833 CDS Human protein_coding chr5:134099676 chr5:134099668 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_40024 0 0 1 0 1 DDX46 chr5:134099594 3'AG 134099594 Downstream 75bp
chr5 134099668 134099668 1 + G T UCEC 134099687 + 134099667 134099707 41 AGAAGTAAACGTGGAGATGACAGACGGTCTAGAAGTAGAGA ATAAGTAAACGTGGAGATGACAGACGGTCTAGAAGTAGAGA < 41bp 1 0.514483960414667 1 0.222184270620346 experiment 0.971032079170667 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134099687 chr5:134099668 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_40025 0 0 1 0 1 DDX46 chr5:134099594 3'AG 134099594 Downstream 75bp
chr7 99780455 99780455 1 + A G UCEC 99780447 + 99780427 99780467 41 TTCAATGCTGTGAAAGCCGCCAAAAGTGACATGCAGGTAAA TTCAATGCTGTGAAAGCCGCCAAAAGTGGCATGCAGGTAAA < 41bp 1 0.497180350799512 1 0.545532941818237 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG3 ENSG00000066923 CDS Human protein_coding chr7:99780447 chr7:99780455 nonsynonymous SNV 0.997 0 29 hm5C_associated_SNPs_40026 0 0 0 0 1 STAG3 chr7:99780462 5'GT 99780462 Upstream 8bp
chrX 149924192 149924192 1 + C T UCEC 149924206 + 149924186 149924226 41 TATGGTCGTATATCAATAGCCAGCTAGACGAGTTTTCTAAT TATGGTTGTATATCAATAGCCAGCTAGACGAGTTTTCTAAT < 41bp 1 0.276752118684834 1 0.743498563766479 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149924206 chrX:149924192 nonsynonymous SNV 0.993 5 7 hm5C_associated_SNPs_40027 0 0 0 0 1 MTMR1 chrX:149924161 3'AG 149924161 Downstream 32bp
chr17 41568616 41568616 1 + C T UCEC 41568607 + 41568587 41568627 41 TCCTTTGCCAACCGGACAACCCTTCTGTTCGGGTACTGATA TCCTTTGCCAACCGGACAACCCTTCTGTTTGGGTACTGATA < 41bp 1 0.0118775352970183 1 0.0409823954105377 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41568607 chr17:41568616 nonsynonymous SNV 0.893 2 30 hm5C_associated_SNPs_40028 0 0 1 0 2 DHX8 chr17:41568533 3'AG 41568533 Downstream 84bp
chr17 41568616 41568616 1 + C T UCEC 41568607 + 41568587 41568627 41 TCCTTTGCCAACCGGACAACCCTTCTGTTCGGGTACTGATA TCCTTTGCCAACCGGACAACCCTTCTGTTTGGGTACTGATA < 41bp 1 0.0118775352970183 1 0.0409823954105377 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41568607 chr17:41568616 nonsynonymous SNV 0.893 2 30 hm5C_associated_SNPs_40028 0 0 1 0 2 DHX8 chr17:41568618 5'GT 41568618 Upstream 3bp
chr12 57906094 57906094 1 + G A UCEC 57906095 + 57906075 57906115 41 TCCTTGCTCAGCCCTAGGAGCTGAGGATAACTATACCTTGG TCCTTGCTCAGCCCTAGGAACTGAGGATAACTATACCTTGG < 41bp 1 0.572565905244711 1 0.365394949913025 experiment 0.854868189510578 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARS ENSG00000166986 CDS Human protein_coding chr12:57906095 chr12:57906094 nonsynonymous SNV 0.999 0 20 hm5C_associated_SNPs_40029 0 0 1 0 3 MARS chr12:57906019 3'AG 57906019 Downstream 76bp
chr12 57906094 57906094 1 + G A UCEC 57906095 + 57906075 57906115 41 TCCTTGCTCAGCCCTAGGAGCTGAGGATAACTATACCTTGG TCCTTGCTCAGCCCTAGGAACTGAGGATAACTATACCTTGG < 41bp 1 0.572565905244711 1 0.365394949913025 experiment 0.854868189510578 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARS ENSG00000166986 CDS Human protein_coding chr12:57906095 chr12:57906094 nonsynonymous SNV 0.999 0 20 hm5C_associated_SNPs_40029 0 0 1 0 3 MARS chr12:57906086 3'AG 57906086 Downstream 9bp
chr12 57906094 57906094 1 + G A UCEC 57906095 + 57906075 57906115 41 TCCTTGCTCAGCCCTAGGAGCTGAGGATAACTATACCTTGG TCCTTGCTCAGCCCTAGGAACTGAGGATAACTATACCTTGG < 41bp 1 0.572565905244711 1 0.365394949913025 experiment 0.854868189510578 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARS ENSG00000166986 CDS Human protein_coding chr12:57906095 chr12:57906094 nonsynonymous SNV 0.999 0 20 hm5C_associated_SNPs_40029 0 0 1 0 3 MARS chr12:57906136 5'GT 57906136 Upstream 43bp
chr6 150290462 150290462 1 + T G UCEC 150290478 + 150290458 150290498 41 AATTTTTGATGTACTGGGAACAAATGCTGGATCCAACAAGT AATTGTTGATGTACTGGGAACAAATGCTGGATCCAACAAGT < 41bp 1 0.294563450101973 1 0.500697076320648 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ULBP1 ENSG00000111981 CDS Human protein_coding chr6:150290478 chr6:150290462 nonsynonymous SNV 0.000 2 5 hm5C_associated_SNPs_40030 0 0 0 0 1 ULBP1 chr6:150290496 5'GT 150290496 Upstream 35bp
chr19 806421 806421 1 + G T UCEC 806441 + 806421 806461 41 GAACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGG TAACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGG < 41bp 1 0.257539069584035 1 0.0422988831996918 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806441 chr19:806421 synonymous SNV . 0 1 hm5C_associated_SNPs_40032 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 14bp
chr11 20385796 20385796 1 + G A UCEC 20385777 + 20385757 20385797 41 GGCATCTGTCGATGTTATTTCCCCAGCATGGCCGAAACAGA GGCATCTGTCGATGTTATTTCCCCAGCATGGCCGAAACAAA < 41bp 1 0.520623118292848 1 0.612832188606262 experiment 0.958753763414304 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HTATIP2 ENSG00000109854 CDS Human protein_coding chr11:20385777 chr11:20385796 nonsynonymous SNV 0.013 1 40 hm5C_associated_SNPs_40033 0 0 1 0 1 HTATIP2 chr11:20385783 3'AG 20385783 Downstream 14bp
chr11 20385796 20385796 1 + G A UCEC 20385778 + 20385758 20385798 41 GCATCTGTCGATGTTATTTCCCCAGCATGGCCGAAACAGAA GCATCTGTCGATGTTATTTCCCCAGCATGGCCGAAACAAAA < 41bp 1 0.462943591892416 1 0.497174769639969 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HTATIP2 ENSG00000109854 CDS Human protein_coding chr11:20385778 chr11:20385796 nonsynonymous SNV 0.013 1 39 hm5C_associated_SNPs_40034 0 0 1 0 1 HTATIP2 chr11:20385783 3'AG 20385783 Downstream 14bp
chr7 56130750 56130750 1 + G A UCEC 56130745 + 56130725 56130765 41 ATTCTCTTGGTTGATGAGATCATGCGAGCTGGAATGTCTTC ATTCTCTTGGTTGATGAGATCATGCAAGCTGGAATGTCTTC < 41bp 1 0.322298823262476 1 0.0893603563308716 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCT6A ENSG00000146731 CDS Human protein_coding chr7:56130745 chr7:56130750 nonsynonymous SNV 0.998 2 26 hm5C_associated_SNPs_40035 0 0 0 0 1 CCT6A chr7:56130706 3'AG 56130706 Downstream 45bp
chr20 61575005 61575005 1 + G A UCEC 61575018 + 61574998 61575038 41 AGGAGTCGCCCTTCGGAGACCTCCTCCACACCATGCAGAGG AGGAGTCACCCTTCGGAGACCTCCTCCACACCATGCAGAGG < 41bp 1 0.427440708327658 1 0.307430386543274 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GID8 ENSG00000101193 CDS Human protein_coding chr20:61575018 chr20:61575005 synonymous SNV . 0 8 hm5C_associated_SNPs_40036 0 0 1 0 1 GID8 chr20:61575044 5'GT 61575044 Upstream 40bp
chr14 71570328 71570328 1 + C A UCEC 71570324 + 71570304 71570344 41 AGCCACGAACAGCTTAAAGACATTCTTGGGGGTCCTATCAG AGCCACGAACAGCTTAAAGACATTATTGGGGGTCCTATCAG < 41bp 1 0.239958943128565 1 0.255856394767761 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71570324 chr14:71570328 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_40037 0 0 1 0 1 PCNX1 chr14:71570386 5'GT 71570386 Upstream 59bp
chr3 196533551 196533551 1 + G A UCEC 196533533 + 196533513 196533553 41 ACTGCTCCTCCCGTTATTGCCCCGCGACCGGATCATACGAA ACTGCTCCTCCCGTTATTGCCCCGCGACCGGATCATACAAA < 41bp 1 0.453695482438596 1 0.489784121513367 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAK2 ENSG00000180370 CDS Human protein_coding chr3:196533533 chr3:196533551 synonymous SNV . 0 39 hm5C_associated_SNPs_40038 0 0 1 0 1 PAK2 chr3:196533557 5'GT 196533557 Upstream 7bp
chr6 160212149 160212149 1 + T G UCEC 160212137 + 160212117 160212157 41 GGGCTGGCGGACGGTGTTTCCCTCCCGTGAGTTCTGGCACA GGGCTGGCGGACGGTGTTTCCCTCCCGTGAGTGCTGGCACA < 41bp 1 0.222234280766632 1 0.145305037498474 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160212137 chr6:160212149 nonsynonymous SNV 0.998 4 33 hm5C_associated_SNPs_40041 0 0 1 0 1 MRPL18 chr6:160212158 5'GT 160212158 Upstream 10bp
chr11 6631427 6631427 1 + G T UCEC 6631418 + 6631398 6631438 41 AGACACAAACAGACGCTCAGCAGACATGTGGAGTTTTGCAG AGACACAAACAGACGCTCAGCAGACATGTTGAGTTTTGCAG < 41bp 1 0.256743272419938 1 0.388672471046448 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6631418 chr11:6631427 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_40042 0 0 1 0 2 ILK chr11:6631379 3'AG 6631379 Downstream 49bp
chr11 6631427 6631427 1 + G T UCEC 6631418 + 6631398 6631438 41 AGACACAAACAGACGCTCAGCAGACATGTGGAGTTTTGCAG AGACACAAACAGACGCTCAGCAGACATGTTGAGTTTTGCAG < 41bp 1 0.256743272419938 1 0.388672471046448 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6631418 chr11:6631427 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_40042 0 0 1 0 2 ILK chr11:6631509 5'GT 6631509 Upstream 83bp
chr1 109814335 109814335 1 + C T UCEC 109814318 + 109814298 109814338 41 AGCCCAGCCCTGACCCTGCTCTGACCACCAAGTCCACCCTG AGCCCAGCCCTGACCCTGCTCTGACCACCAAGTCCACTCTG < 41bp 1 0.173848841792666 1 0.0801485478878021 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109814318 chr1:109814335 synonymous SNV . 0 38 hm5C_associated_SNPs_40044 0 0 0 0 1 CELSR2 chr1:109814344 5'GT 109814344 Upstream 10bp
chr10 94757350 94757350 1 + C T UCEC 94757363 + 94757343 94757383 41 AGTTTAACTTAGATGTCATACAGTGTGAATGTAAGTACTAT AGTTTAATTTAGATGTCATACAGTGTGAATGTAAGTACTAT < 41bp 1 0.244474460861608 1 0.129523396492004 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC6 ENSG00000138190 CDS Human protein_coding chr10:94757363 chr10:94757350 synonymous SNV . 0 8 hm5C_associated_SNPs_40046 0 0 1 1 1 EXOC6 chr10:94757372 5'GT 94757372 Upstream 23bp
chr17 7813839 7813839 1 + G A UCEC 7813827 + 7813807 7813847 41 CACGCTGTCCCGAATACCCCCCATCGCAGCCCGCCTTCAGA CACGCTGTCCCGAATACCCCCCATCGCAGCCCACCTTCAGA < 41bp 1 0.0280082230926398 1 0.11658975481987 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7813827 chr17:7813839 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_40048 0 0 1 0 2 CHD3 chr17:7813746 3'AG 7813746 Downstream 94bp
chr17 7813839 7813839 1 + G A UCEC 7813827 + 7813807 7813847 41 CACGCTGTCCCGAATACCCCCCATCGCAGCCCGCCTTCAGA CACGCTGTCCCGAATACCCCCCATCGCAGCCCACCTTCAGA < 41bp 1 0.0280082230926398 1 0.11658975481987 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7813827 chr17:7813839 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_40048 0 0 1 0 2 CHD3 chr17:7813909 5'GT 7813909 Upstream 71bp
chr17 7813839 7813839 1 + G A UCEC 7813828 + 7813808 7813848 41 ACGCTGTCCCGAATACCCCCCATCGCAGCCCGCCTTCAGAT ACGCTGTCCCGAATACCCCCCATCGCAGCCCACCTTCAGAT < 41bp 1 0.152258829152194 1 0.228510677814484 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7813828 chr17:7813839 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_40049 0 0 1 0 2 CHD3 chr17:7813746 3'AG 7813746 Downstream 94bp
chr17 7813839 7813839 1 + G A UCEC 7813828 + 7813808 7813848 41 ACGCTGTCCCGAATACCCCCCATCGCAGCCCGCCTTCAGAT ACGCTGTCCCGAATACCCCCCATCGCAGCCCACCTTCAGAT < 41bp 1 0.152258829152194 1 0.228510677814484 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7813828 chr17:7813839 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_40049 0 0 1 0 2 CHD3 chr17:7813909 5'GT 7813909 Upstream 71bp
chr11 66258799 66258799 1 + G A UCEC 66258782 + 66258762 66258802 41 AGCTATGAATTCCGGGGAAGCCCTTTCCAGGTGACCCGGGG AGCTATGAATTCCGGGGAAGCCCTTTCCAGGTGACCCAGGG < 41bp 1 0.137252532960447 1 0.178235054016113 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66258782 chr11:66258799 nonsynonymous SNV 0.846 3 38 hm5C_associated_SNPs_40051 0 0 0 0 2 DPP3 chr11:66258724 3'AG 66258724 Downstream 76bp
chr11 66258799 66258799 1 + G A UCEC 66258782 + 66258762 66258802 41 AGCTATGAATTCCGGGGAAGCCCTTTCCAGGTGACCCGGGG AGCTATGAATTCCGGGGAAGCCCTTTCCAGGTGACCCAGGG < 41bp 1 0.137252532960447 1 0.178235054016113 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66258782 chr11:66258799 nonsynonymous SNV 0.846 3 38 hm5C_associated_SNPs_40051 0 0 0 0 2 DPP3 chr11:66258854 5'GT 66258854 Upstream 56bp
chr17 7479998 7479998 1 + C T UCEC 7480007 + 7479987 7480027 41 ATATGCTTAACCGGAGATACCTGTGTGAGTAATTCGGTTCT ATATGCTTAACTGGAGATACCTGTGTGAGTAATTCGGTTCT < 41bp 1 0.438672626246826 1 0.0770598948001862 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7480007 chr17:7479998 nonsynonymous SNV 0.910 2 12 hm5C_associated_SNPs_40052 0 0 1 0 1 EIF4A1 chr17:7480010 5'GT 7480010 Upstream 13bp
chr14 21544546 21544546 1 + C T UCEC 21544565 + 21544545 21544585 41 CCGTCCTGCTGGACCTTCGTCAGGCACCTCCACTGCCTCCA CTGTCCTGCTGGACCTTCGTCAGGCACCTCCACTGCCTCCA < 41bp 1 0.650601866236848 1 0.904685497283936 experiment 0.698796267526303 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21544565 chr14:21544546 synonymous SNV . 0 2 hm5C_associated_SNPs_40054 0 0 0 0 2 ARHGEF40 chr14:21544519 3'AG 21544519 Downstream 28bp
chr14 21544546 21544546 1 + C T UCEC 21544565 + 21544545 21544585 41 CCGTCCTGCTGGACCTTCGTCAGGCACCTCCACTGCCTCCA CTGTCCTGCTGGACCTTCGTCAGGCACCTCCACTGCCTCCA < 41bp 1 0.650601866236848 1 0.904685497283936 experiment 0.698796267526303 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21544565 chr14:21544546 synonymous SNV . 0 2 hm5C_associated_SNPs_40054 0 0 0 0 2 ARHGEF40 chr14:21544615 5'GT 21544615 Upstream 70bp
chr11 61111359 61111359 1 + C T UCEC 61111346 + 61111326 61111366 41 AGATGCTGAAACCACTGCAGCAGCCTGGCCTAACGTGGCTG AGATGCTGAAACCACTGCAGCAGCCTGGCCTAATGTGGCTG < 41bp 1 0.228883398146264 1 0.440920323133469 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61111346 chr11:61111359 synonymous SNV . 0 34 hm5C_associated_SNPs_40057 0 0 1 0 2 TKFC chr11:61111328 3'AG 61111328 Downstream 32bp
chr11 61111359 61111359 1 + C T UCEC 61111346 + 61111326 61111366 41 AGATGCTGAAACCACTGCAGCAGCCTGGCCTAACGTGGCTG AGATGCTGAAACCACTGCAGCAGCCTGGCCTAATGTGGCTG < 41bp 1 0.228883398146264 1 0.440920323133469 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61111346 chr11:61111359 synonymous SNV . 0 34 hm5C_associated_SNPs_40057 0 0 1 0 2 TKFC chr11:61111447 5'GT 61111447 Upstream 89bp
chr6 160494428 160494428 1 + T C UCEC 160494408 + 160494388 160494428 41 TTCGTGTGCAGGCCTGAGGCCAGGCCAACCAATAGGCCCAT TTCGTGTGCAGGCCTGAGGCCAGGCCAACCAATAGGCCCAC < 41bp 1 0.390068324110585 1 0.901953816413879 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160494408 chr6:160494428 nonsynonymous SNV 0.922 1 41 hm5C_associated_SNPs_40061 0 0 1 0 1 IGF2R chr6:160494501 5'GT 160494501 Upstream 74bp
chr19 10886489 10886489 1 + C T UCEC 10886497 + 10886477 10886517 41 CAGTTCATCAGCCGGGAGAGCAGCCTCATTCTGGCTGTCAC CAGTTCATCAGCTGGGAGAGCAGCCTCATTCTGGCTGTCAC < 41bp 1 0.215418984123519 1 0.194492369890213 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10886497 chr19:10886489 nonsynonymous SNV 0.998 5 13 hm5C_associated_SNPs_40062 0 0 1 1 1 DNM2 chr19:10886582 5'GT 10886582 Upstream 94bp
chr2 113260548 113260548 1 + G A UCEC 113260557 + 113260537 113260577 41 GGGTGTGCTTCGGACTGCTTCAGAACCATATCATGTTGATA GGGTGTGCTTCAGACTGCTTCAGAACCATATCATGTTGATA < 41bp 1 0.409576084781862 1 0.465059250593185 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113260557 chr2:113260548 nonsynonymous SNV 0.999 4 12 hm5C_associated_SNPs_40063 0 0 1 1 1 TTL chr2:113260489 3'AG 113260489 Downstream 60bp
chr10 75871772 75871772 1 + C T UCEC 75871762 + 75871742 75871782 41 GTCCCCCCTGACATGGAAGACGATTACGAACCTGAGCTGCT GTCCCCCCTGACATGGAAGACGATTACGAATCTGAGCTGCT < 41bp 1 0.0756876372355463 1 0.0946898758411407 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75871762 chr10:75871772 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_40064 0 0 1 0 1 VCL chr10:75871870 5'GT 75871870 Upstream 99bp
chr2 7154633 7154633 1 + G T UCEC 7154652 + 7154632 7154672 41 TGCAATTAGCTGCCCAGATGCTGCCTGCCCTAAACAGGGCC TTCAATTAGCTGCCCAGATGCTGCCTGCCCTAAACAGGGCC < 41bp 1 0.40545555018823 1 0.67503035068512 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF144A ENSG00000151692 CDS Human protein_coding chr2:7154652 chr2:7154633 nonsynonymous SNV 0.998 3 2 hm5C_associated_SNPs_40065 0 0 0 0 1 RNF144A chr2:7154585 3'AG 7154585 Downstream 49bp
chr17 2266367 2266367 1 + G A UCEC 2266362 + 2266342 2266382 41 CCCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGGG CCCTCTGCTGATGAGCTGGTCCAGCAGCACCGCATCCGGGG < 41bp 1 0.107439343208686 1 0.187005341053009 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2266362 chr17:2266367 nonsynonymous SNV 0.999 3 26 hm5C_associated_SNPs_40066 0 0 1 0 2 SGSM2 chr17:2266283 3'AG 2266283 Downstream 85bp
chr17 2266367 2266367 1 + G A UCEC 2266362 + 2266342 2266382 41 CCCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGGG CCCTCTGCTGATGAGCTGGTCCAGCAGCACCGCATCCGGGG < 41bp 1 0.107439343208686 1 0.187005341053009 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2266362 chr17:2266367 nonsynonymous SNV 0.999 3 26 hm5C_associated_SNPs_40066 0 0 1 0 2 SGSM2 chr17:2266428 5'GT 2266428 Upstream 62bp
chr17 2266367 2266367 1 + G A UCEC 2266363 + 2266343 2266383 41 CCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGGGT CCTCTGCTGATGAGCTGGTCCAGCAGCACCGCATCCGGGGT < 41bp 1 0.631597065896158 1 0.538245737552643 experiment 0.736805868207684 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2266363 chr17:2266367 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_40067 0 0 1 0 2 SGSM2 chr17:2266283 3'AG 2266283 Downstream 85bp
chr17 2266367 2266367 1 + G A UCEC 2266363 + 2266343 2266383 41 CCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGGGT CCTCTGCTGATGAGCTGGTCCAGCAGCACCGCATCCGGGGT < 41bp 1 0.631597065896158 1 0.538245737552643 experiment 0.736805868207684 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2266363 chr17:2266367 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_40067 0 0 1 0 2 SGSM2 chr17:2266428 5'GT 2266428 Upstream 62bp
chr8 124787444 124787444 1 + G T UCEC 124787439 + 124787419 124787459 41 TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGCT TATGAGGAACTGCTAAAGTACAGCCTAGATCATCTCATGCT < 41bp 1 0.379725405053639 1 0.129114270210266 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787439 chr8:124787444 nonsynonymous SNV 0.990 2 26 hm5C_associated_SNPs_40068 0 0 0 0 2 FAM91A1 chr8:124787387 3'AG 124787387 Downstream 58bp
chr8 124787444 124787444 1 + G T UCEC 124787439 + 124787419 124787459 41 TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGCT TATGAGGAACTGCTAAAGTACAGCCTAGATCATCTCATGCT < 41bp 1 0.379725405053639 1 0.129114270210266 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787439 chr8:124787444 nonsynonymous SNV 0.990 2 26 hm5C_associated_SNPs_40068 0 0 0 0 2 FAM91A1 chr8:124787538 5'GT 124787538 Upstream 95bp
chr5 64881995 64881995 1 + C T UCEC 64881981 + 64881961 64882001 41 GGATCAAATACTAATGGATCCCAGTTTTTCATAACGGTAGT GGATCAAATACTAATGGATCCCAGTTTTTCATAATGGTAGT < 41bp 1 0.284693974171623 1 0.157161951065063 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPWD1 ENSG00000113593 CDS Human protein_coding chr5:64881981 chr5:64881995 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_40069 0 0 1 0 1 PPWD1 chr5:64882008 5'GT 64882008 Upstream 14bp
chr16 57075446 57075446 1 + G A UCEC 57075442 + 57075422 57075462 41 AAGCACCTAGAGCAGCTCTGCAAGGCTCTGGGAGGAAGCTG AAGCACCTAGAGCAGCTCTGCAAGACTCTGGGAGGAAGCTG < 41bp 1 0.607464126523554 1 0.386438071727753 experiment 0.785071746952893 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57075442 chr16:57075446 nonsynonymous SNV 0.045 1 25 hm5C_associated_SNPs_40070 0 0 0 0 2 NLRC5 chr16:57075397 3'AG 57075397 Downstream 50bp
chr16 57075446 57075446 1 + G A UCEC 57075442 + 57075422 57075462 41 AAGCACCTAGAGCAGCTCTGCAAGGCTCTGGGAGGAAGCTG AAGCACCTAGAGCAGCTCTGCAAGACTCTGGGAGGAAGCTG < 41bp 1 0.607464126523554 1 0.386438071727753 experiment 0.785071746952893 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57075442 chr16:57075446 nonsynonymous SNV 0.045 1 25 hm5C_associated_SNPs_40070 0 0 0 0 2 NLRC5 chr16:57075486 5'GT 57075486 Upstream 41bp
chrX 48925554 48925554 1 + C T UCEC 48925566 + 48925546 48925586 41 GGGCCAGGCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCC GGGCCAGGTGCTGTACGGGGCCCCCAGCCAGGCGCCACTCC < 41bp 1 0.0980018927572641 1 0.0546047687530518 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925566 chrX:48925554 nonsynonymous SNV 0.994 1 9 hm5C_associated_SNPs_40072 0 0 0 0 1 CCDC120 chrX:48925626 5'GT 48925626 Upstream 73bp
chrX 48925554 48925554 1 + C T UCEC 48925567 + 48925547 48925587 41 GGCCAGGCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCC GGCCAGGTGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCC < 41bp 1 0.455828830407699 1 0.163214921951294 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925567 chrX:48925554 nonsynonymous SNV 0.994 1 8 hm5C_associated_SNPs_40073 0 0 0 0 1 CCDC120 chrX:48925626 5'GT 48925626 Upstream 73bp
chrX 48925554 48925554 1 + C T UCEC 48925568 + 48925548 48925588 41 GCCAGGCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCA GCCAGGTGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCA < 41bp 1 0.172298398322529 1 0.0855951905250549 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925568 chrX:48925554 nonsynonymous SNV 0.994 1 7 hm5C_associated_SNPs_40074 0 0 0 0 1 CCDC120 chrX:48925626 5'GT 48925626 Upstream 73bp
chrX 48925554 48925554 1 + C T UCEC 48925569 + 48925549 48925589 41 CCAGGCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCAC CCAGGTGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCAC < 41bp 1 0.171585938121355 1 0.502779304981232 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925569 chrX:48925554 nonsynonymous SNV 0.994 1 6 hm5C_associated_SNPs_40075 0 0 0 0 1 CCDC120 chrX:48925626 5'GT 48925626 Upstream 73bp
chrX 48925554 48925554 1 + C T UCEC 48925570 + 48925550 48925590 41 CAGGCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCACA CAGGTGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCACA < 41bp 1 0.334321225684163 1 0.479560375213623 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925570 chrX:48925554 nonsynonymous SNV 0.994 1 5 hm5C_associated_SNPs_40076 0 0 0 0 1 CCDC120 chrX:48925626 5'GT 48925626 Upstream 73bp
chrX 48925554 48925554 1 + C T UCEC 48925573 + 48925553 48925593 41 GCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCACACTC GTGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCACACTC < 41bp 1 0.513867696362275 1 0.889070272445679 experiment 0.972264607275449 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925573 chrX:48925554 nonsynonymous SNV 0.994 1 2 hm5C_associated_SNPs_40077 0 0 0 0 1 CCDC120 chrX:48925626 5'GT 48925626 Upstream 73bp
chrX 48925554 48925554 1 + C T UCEC 48925574 + 48925554 48925594 41 CGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCACACTCG TGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCACACTCG < 41bp 1 0.620560203534743 1 0.940375208854675 experiment 0.758879592930513 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925574 chrX:48925554 nonsynonymous SNV 0.994 1 1 hm5C_associated_SNPs_40078 0 0 0 0 1 CCDC120 chrX:48925626 5'GT 48925626 Upstream 73bp
chr5 33455750 33455750 1 + G T UCEC 33455756 + 33455736 33455776 41 AGAAAATCATTAAAGAAAAACAAGCTTTTGAAAGACTGGAA AGAAAATCATTAAATAAAAACAAGCTTTTGAAAGACTGGAA < 41bp 1 0.29407817291201 1 0.308154284954071 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33455756 chr5:33455750 stopgain 1.000 1 15 hm5C_associated_SNPs_40079 0 0 1 0 2 TARS chr5:33455692 3'AG 33455692 Downstream 59bp
chr5 33455750 33455750 1 + G T UCEC 33455756 + 33455736 33455776 41 AGAAAATCATTAAAGAAAAACAAGCTTTTGAAAGACTGGAA AGAAAATCATTAAATAAAAACAAGCTTTTGAAAGACTGGAA < 41bp 1 0.29407817291201 1 0.308154284954071 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33455756 chr5:33455750 stopgain 1.000 1 15 hm5C_associated_SNPs_40079 0 0 1 0 2 TARS chr5:33455809 5'GT 33455809 Upstream 60bp
chr19 4954466 4954466 1 + G T UCEC 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGTACGGGCAAGG < 41bp 1 0.263825340845915 1 0.526093065738678 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954466 . 0.009 0 31 hm5C_associated_SNPs_40080 0 0 0 0 1 UHRF1 chr19:4954500 5'GT 4954500 Upstream 35bp
chr19 4954466 4954466 1 + G T UCEC 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGGGGGGCTTCGCGTCCCCCAGTACGGGCAAGGGCAA < 41bp 1 0.620552434556894 1 0.392897218465805 experiment 0.758895130886212 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954466 . 0.009 0 27 hm5C_associated_SNPs_40081 0 0 0 0 1 UHRF1 chr19:4954500 5'GT 4954500 Upstream 35bp
chr9 131386726 131386726 1 + T C UCEC 131386723 + 131386703 131386743 41 CTGGATGAGAACTCGGCCTTCCTTCAGTTCAACTGGAAGGC CTGGATGAGAACTCGGCCTTCCTCCAGTTCAACTGGAAGGC < 41bp 1 0.0346695005411939 1 0.0874844491481781 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131386723 chr9:131386726 synonymous SNV . 0 24 hm5C_associated_SNPs_40082 0 0 1 0 1 SPTAN1 chr9:131386766 5'GT 131386766 Upstream 41bp
chr16 57787135 57787135 1 + G A UCEC 57787133 + 57787113 57787153 41 CCAACCCCAGCGCCCCCCTCCGGCGCATCTATGAGCGGCCC CCAACCCCAGCGCCCCCCTCCGACGCATCTATGAGCGGCCC < 41bp 1 0.482338964479688 1 0.620922684669495 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57787133 chr16:57787135 synonymous SNV . 0 23 hm5C_associated_SNPs_40083 0 0 0 0 1 KATNB1 chr16:57787179 5'GT 57787179 Upstream 45bp
chr9 96079886 96079886 1 + G A UCEC 96079899 + 96079879 96079919 41 CGGAGCCGCCCCGACCCTGTCCGTGCCCACACCAGGTACTG CGGAGCCACCCCGACCCTGTCCGTGCCCACACCAGGTACTG < 41bp 1 0.121240852865365 1 0.0741930305957794 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WNK2 ENSG00000165238 CDS Human protein_coding chr9:96079899 chr9:96079886 nonsynonymous SNV 0.000 0 8 hm5C_associated_SNPs_40084 0 0 1 0 2 WNK2 chr9:96079802 3'AG 96079802 Downstream 85bp
chr9 96079886 96079886 1 + G A UCEC 96079899 + 96079879 96079919 41 CGGAGCCGCCCCGACCCTGTCCGTGCCCACACCAGGTACTG CGGAGCCACCCCGACCCTGTCCGTGCCCACACCAGGTACTG < 41bp 1 0.121240852865365 1 0.0741930305957794 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WNK2 ENSG00000165238 CDS Human protein_coding chr9:96079899 chr9:96079886 nonsynonymous SNV 0.000 0 8 hm5C_associated_SNPs_40084 0 0 1 0 2 WNK2 chr9:96079913 5'GT 96079913 Upstream 28bp
chr20 60882657 60882657 1 + G A UCEC 60882662 + 60882642 60882682 41 CTCTTCGCAGCTCCCGGAGCCAGTCGGCAGCGGTCACCCCG CTCTTCGCAGCTCCCAGAGCCAGTCGGCAGCGGTCACCCCG < 41bp 1 0.309629708333714 1 0.570574700832367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882662 chr20:60882657 nonsynonymous SNV 0.999 1 16 hm5C_associated_SNPs_40085 0 0 1 0 1 ADRM1 chr20:60882652 3'AG 60882652 Downstream 6bp
chr3 51980296 51980296 1 + T G UCEC 51980280 + 51980260 51980300 41 GCCATCCTCACTAGTGGGCTCCGCATCATGCCACATTCTGG GCCATCCTCACTAGTGGGCTCCGCATCATGCCACATGCTGG < 41bp 1 0.370370599579617 1 0.187888234853745 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PARP3 ENSG00000041880 CDS Human protein_coding chr3:51980280 chr3:51980296 nonsynonymous SNV 0.998 4 37 hm5C_associated_SNPs_40086 0 0 1 0 1 PARP3 chr3:51980359 5'GT 51980359 Upstream 64bp
chr10 70525812 70525812 1 + G T UCEC 70525803 + 70525783 70525823 41 TTGAGTGTCCTATTGGACTACAGATTAGAGGATAATAAAGA TTGAGTGTCCTATTGGACTACAGATTAGATGATAATAAAGA < 41bp 1 0.223302433390695 1 0.223011195659637 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70525803 chr10:70525812 nonsynonymous SNV 0.992 3 30 hm5C_associated_SNPs_40088 0 0 1 0 1 CCAR1 chr10:70525836 5'GT 70525836 Upstream 25bp
chr16 69356471 69356471 1 + C T UCEC 69356472 + 69356452 69356492 41 TTTGGTTTCAGGTCTGTGGCCCCTCTCGCACCAACCCCAGC TTTGGTTTCAGGTCTGTGGTCCCTCTCGCACCAACCCCAGC < 41bp 1 0.0617795465001522 1 0.0500263869762421 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VPS4A ENSG00000132612 CDS Human protein_coding chr16:69356472 chr16:69356471 synonymous SNV . 0 20 hm5C_associated_SNPs_40089 0 0 1 0 1 VPS4A chr16:69356463 3'AG 69356463 Downstream 9bp
chr17 48562201 48562201 1 + C A UCEC 48562204 + 48562184 48562224 41 TGGCAGCAGAGAACCCCCTCCCCTGTGCCAGGAGGATGACA TGGCAGCAGAGAACCCCATCCCCTGTGCCAGGAGGATGACA < 41bp 1 0.181544022342287 1 0.241706967353821 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48562204 chr17:48562201 synonymous SNV . 0 18 hm5C_associated_SNPs_40090 0 0 0 0 1 RSAD1 chr17:48562105 3'AG 48562105 Downstream 97bp
chr17 48562201 48562201 1 + C A UCEC 48562205 + 48562185 48562225 41 GGCAGCAGAGAACCCCCTCCCCTGTGCCAGGAGGATGACAA GGCAGCAGAGAACCCCATCCCCTGTGCCAGGAGGATGACAA < 41bp 1 0.177919059699538 1 0.41158452630043 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48562205 chr17:48562201 synonymous SNV . 0 17 hm5C_associated_SNPs_40091 0 0 0 0 1 RSAD1 chr17:48562105 3'AG 48562105 Downstream 97bp
chr1 44134861 44134861 1 + G T UCEC 44134847 + 44134827 44134867 41 AGGAGGTGAGTCAGAGTGAGCTCTTCCCCAAGGAGGATCTG AGGAGGTGAGTCAGAGTGAGCTCTTCCCCAAGGATGATCTG < 41bp 1 0.26760088366288 1 0.026537150144577 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KDM4A ENSG00000066135 CDS Human protein_coding chr1:44134847 chr1:44134861 nonsynonymous SNV 0.999 1 35 hm5C_associated_SNPs_40092 0 0 1 0 1 KDM4A chr1:44134771 3'AG 44134771 Downstream 91bp
chr12 94563011 94563011 1 + C T UCEC 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATCCATTCCGACCTGACATCCGTTTATGGCATCGTGGTAAT < 41bp 1 0.0701489142801134 1 0.0716464817523956 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94563011 nonsynonymous SNV 0.999 3 32 hm5C_associated_SNPs_40093 0 0 1 0 2 PLXNC1 chr12:94562929 3'AG 94562929 Downstream 83bp
chr12 94563011 94563011 1 + C T UCEC 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATCCATTCCGACCTGACATCCGTTTATGGCATCGTGGTAAT < 41bp 1 0.0701489142801134 1 0.0716464817523956 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94563011 nonsynonymous SNV 0.999 3 32 hm5C_associated_SNPs_40093 0 0 1 0 2 PLXNC1 chr12:94563069 5'GT 94563069 Upstream 59bp
chr6 107102657 107102657 1 + C A UCEC 107102660 + 107102640 107102680 41 GTCTCTTTGGTCCAAAGCTGCTGACCTCTTTGAGTCTGAGG GTCTCTTTGGTCCAAAGATGCTGACCTCTTTGAGTCTGAGG < 41bp 1 0.280794552650075 1 0.102718412876129 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QRSL1 ENSG00000130348 CDS Human protein_coding chr6:107102660 chr6:107102657 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_40096 0 0 0 0 1 QRSL1 chr6:107102605 3'AG 107102605 Downstream 53bp
chr19 10202240 10202240 1 + C A UCEC 10202247 + 10202227 10202267 41 CCCGCGCTGGGACCGGGACCCGGATCGCCGCAGCACCCACA CCCGCGCTGGGACAGGGACCCGGATCGCCGCAGCACCCACA < 41bp 1 0.50426108788863 1 0.81847882270813 experiment 0.99147782422274 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10202247 chr19:10202240 synonymous SNV . 0 14 hm5C_associated_SNPs_40097 0 0 0 0 2 C19orf66 chr19:10202152 3'AG 10202152 Downstream 89bp
chr19 10202240 10202240 1 + C A UCEC 10202247 + 10202227 10202267 41 CCCGCGCTGGGACCGGGACCCGGATCGCCGCAGCACCCACA CCCGCGCTGGGACAGGGACCCGGATCGCCGCAGCACCCACA < 41bp 1 0.50426108788863 1 0.81847882270813 experiment 0.99147782422274 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10202247 chr19:10202240 synonymous SNV . 0 14 hm5C_associated_SNPs_40097 0 0 0 0 2 C19orf66 chr19:10202306 5'GT 10202306 Upstream 67bp
chr1 145663165 145663165 1 + G T UCEC 145663167 + 145663147 145663187 41 GGTCTTTACTAGCTTTGGGGCCATTTGGATCACACGATGTT GGTCTTTACTAGCTTTGGTGCCATTTGGATCACACGATGTT < 41bp 1 0.0238772200394217 1 0.0394192039966583 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF115 ENSG00000121848 CDS Human other chr1:145663167 chr1:145663165 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_40100 0 0 1 0 1 RNF115 chr1:145663159 3'AG 145663159 Downstream 7bp
chr1 145663165 145663165 1 + G T UCEC 145663168 + 145663148 145663188 41 GTCTTTACTAGCTTTGGGGCCATTTGGATCACACGATGTTT GTCTTTACTAGCTTTGGTGCCATTTGGATCACACGATGTTT < 41bp 1 0.0351544792345624 1 0.0725966989994049 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF115 ENSG00000121848 CDS Human other chr1:145663168 chr1:145663165 nonsynonymous SNV . 0 18 hm5C_associated_SNPs_40101 0 0 1 0 1 RNF115 chr1:145663159 3'AG 145663159 Downstream 7bp
chr16 53504343 53504343 1 + A G UCEC 53504331 + 53504311 53504351 41 TGGAGGGATAACATTCTTCCCTGTCCAAGTCAATGTTGGGG TGGAGGGATAACATTCTTCCCTGTCCAAGTCAGTGTTGGGG < 41bp 1 0.114299992621982 1 0.246370166540146 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RBL2 ENSG00000103479 CDS Human protein_coding chr16:53504331 chr16:53504343 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_40102 0 0 1 0 1 RBL2 chr16:53504295 3'AG 53504295 Downstream 49bp
chr1 2421284 2421284 1 + A G UCEC 2421285 + 2421265 2421305 41 GCTGATGAGATTGACGATGACTGCAAGCTCCTCAATGGGGA GCTGATGAGATTGACGATGGCTGCAAGCTCCTCAATGGGGA < 41bp 1 0.7184882771932 1 0.22379657626152 experiment 0.563023445613601 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2421285 chr1:2421284 nonsynonymous SNV 0.779 4 20 hm5C_associated_SNPs_40103 0 0 0 0 2 PLCH2 chr1:2421199 3'AG 2421199 Downstream 86bp
chr1 2421284 2421284 1 + A G UCEC 2421285 + 2421265 2421305 41 GCTGATGAGATTGACGATGACTGCAAGCTCCTCAATGGGGA GCTGATGAGATTGACGATGGCTGCAAGCTCCTCAATGGGGA < 41bp 1 0.7184882771932 1 0.22379657626152 experiment 0.563023445613601 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2421285 chr1:2421284 nonsynonymous SNV 0.779 4 20 hm5C_associated_SNPs_40103 0 0 0 0 2 PLCH2 chr1:2421306 5'GT 2421306 Upstream 23bp
chr1 79128397 79128397 1 + A C UCEC 79128401 + 79128381 79128421 41 TATTGCAGCTAGAGGAAGTCCAAAGAAAACTTGGATTTGCT TATTGCAGCTAGAGGACGTCCAAAGAAAACTTGGATTTGCT < 41bp 1 0.322527195220241 1 0.3644959628582 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IFI44 ENSG00000137965 CDS Human protein_coding chr1:79128401 chr1:79128397 nonsynonymous SNV 0.001 0 17 hm5C_associated_SNPs_40105 0 0 0 0 1 IFI44 chr1:79128389 3'AG 79128389 Downstream 9bp
chr12 46215259 46215259 1 + G T UCEC 46215264 + 46215244 46215284 41 GAGAAGACTGATAGAGACTTCGTTAAGGTAAATCATTTTAA GAGAAGACTGATAGATACTTCGTTAAGGTAAATCATTTTAA < 41bp 1 0.0979431004559117 1 0.261724412441254 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID2 ENSG00000189079 CDS Human protein_coding chr12:46215264 chr12:46215259 nonsynonymous SNV 0.998 3 16 hm5C_associated_SNPs_40106 0 0 1 0 2 ARID2 chr12:46215203 3'AG 46215203 Downstream 57bp
chr12 46215259 46215259 1 + G T UCEC 46215264 + 46215244 46215284 41 GAGAAGACTGATAGAGACTTCGTTAAGGTAAATCATTTTAA GAGAAGACTGATAGATACTTCGTTAAGGTAAATCATTTTAA < 41bp 1 0.0979431004559117 1 0.261724412441254 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID2 ENSG00000189079 CDS Human protein_coding chr12:46215264 chr12:46215259 nonsynonymous SNV 0.998 3 16 hm5C_associated_SNPs_40106 0 0 1 0 2 ARID2 chr12:46215270 5'GT 46215270 Upstream 12bp
chr7 130021583 130021583 1 + A C UCEC 130021565 + 130021545 130021585 41 GGTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGA GGTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGCGA < 41bp 1 0.223238682625144 1 0.136224448680878 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021565 chr7:130021583 nonsynonymous SNV 0.002 0 39 hm5C_associated_SNPs_40107 0 0 0 0 1 CPA1 chr7:130021536 3'AG 130021536 Downstream 48bp
chr7 130021583 130021583 1 + A C UCEC 130021566 + 130021546 130021586 41 GTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGAC GTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGCGAC < 41bp 1 0.388288573848736 1 0.510036826133728 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021566 chr7:130021583 nonsynonymous SNV 0.002 0 38 hm5C_associated_SNPs_40108 0 0 0 0 1 CPA1 chr7:130021536 3'AG 130021536 Downstream 48bp
chr7 130021583 130021583 1 + A C UCEC 130021567 + 130021547 130021587 41 TCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACC TCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGCGACC < 41bp 1 0.753933946152037 1 0.617383778095245 experiment 0.492132107695927 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021567 chr7:130021583 nonsynonymous SNV 0.002 0 37 hm5C_associated_SNPs_40109 0 0 0 0 1 CPA1 chr7:130021536 3'AG 130021536 Downstream 48bp
chr7 130021583 130021583 1 + A C UCEC 130021569 + 130021549 130021589 41 AAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACCAT AAGATCTTTCTGGAGTCCCACGGCATCAGCTATGCGACCAT < 41bp 1 0.775203221691551 1 0.686581671237946 experiment 0.449593556616898 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021569 chr7:130021583 nonsynonymous SNV 0.002 0 35 hm5C_associated_SNPs_40110 0 0 0 0 1 CPA1 chr7:130021536 3'AG 130021536 Downstream 48bp
chr7 130021583 130021583 1 + A C UCEC 130021572 + 130021552 130021592 41 ATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGAT ATCTTTCTGGAGTCCCACGGCATCAGCTATGCGACCATGAT < 41bp 1 0.351650815801541 1 0.464314848184586 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021572 chr7:130021583 nonsynonymous SNV 0.002 0 32 hm5C_associated_SNPs_40111 0 0 0 0 1 CPA1 chr7:130021536 3'AG 130021536 Downstream 48bp
chr7 130021583 130021583 1 + A C UCEC 130021575 + 130021555 130021595 41 TTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGA TTTCTGGAGTCCCACGGCATCAGCTATGCGACCATGATCGA < 41bp 1 0.689172886866864 1 0.516264915466309 experiment 0.621654226266272 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021575 chr7:130021583 nonsynonymous SNV 0.002 0 29 hm5C_associated_SNPs_40112 0 0 0 0 1 CPA1 chr7:130021536 3'AG 130021536 Downstream 48bp
chr7 130021583 130021583 1 + A C UCEC 130021578 + 130021558 130021598 41 CTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGAGGA CTGGAGTCCCACGGCATCAGCTATGCGACCATGATCGAGGA < 41bp 1 0.394487849046389 1 0.2722187936306 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021578 chr7:130021583 nonsynonymous SNV 0.002 0 26 hm5C_associated_SNPs_40113 0 0 0 0 1 CPA1 chr7:130021536 3'AG 130021536 Downstream 48bp
chr7 130021583 130021583 1 + A C UCEC 130021586 + 130021566 130021606 41 CCACGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGT CCACGGCATCAGCTATGCGACCATGATCGAGGACGTGCAGT < 41bp 1 0.107150553001617 1 0.0240089893341064 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021586 chr7:130021583 nonsynonymous SNV 0.002 0 18 hm5C_associated_SNPs_40114 0 0 0 0 1 CPA1 chr7:130021536 3'AG 130021536 Downstream 48bp
chr7 130021583 130021583 1 + A C UCEC 130021587 + 130021567 130021607 41 CACGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGTC CACGGCATCAGCTATGCGACCATGATCGAGGACGTGCAGTC < 41bp 1 0.656573856969171 1 0.135350257158279 experiment 0.686852286061657 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021587 chr7:130021583 nonsynonymous SNV 0.002 0 17 hm5C_associated_SNPs_40115 0 0 0 0 1 CPA1 chr7:130021536 3'AG 130021536 Downstream 48bp
chr20 11900395 11900395 1 + C T UCEC 11900386 + 11900366 11900406 41 TATGTTTTAGCTGTTGGGAGCTCTGTGTTCCATGCGATGTT TATGTTTTAGCTGTTGGGAGCTCTGTGTTTCATGCGATGTT < 41bp 1 0.166129702972789 1 0.140085220336914 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BTBD3 ENSG00000132640 CDS Human protein_coding chr20:11900386 chr20:11900395 synonymous SNV . 0 30 hm5C_associated_SNPs_40116 0 0 1 0 2 BTBD3 chr20:11900366 3'AG 11900366 Downstream 30bp
chr20 11900395 11900395 1 + C T UCEC 11900386 + 11900366 11900406 41 TATGTTTTAGCTGTTGGGAGCTCTGTGTTCCATGCGATGTT TATGTTTTAGCTGTTGGGAGCTCTGTGTTTCATGCGATGTT < 41bp 1 0.166129702972789 1 0.140085220336914 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BTBD3 ENSG00000132640 CDS Human protein_coding chr20:11900386 chr20:11900395 synonymous SNV . 0 30 hm5C_associated_SNPs_40116 0 0 1 0 2 BTBD3 chr20:11900484 5'GT 11900484 Upstream 90bp
chr12 124239058 124239058 1 + T G UCEC 124239064 + 124239044 124239084 41 CTCCTACCTGAGGCTCTGGGCGCTTAGCCTGGCTCACGCAC CTCCTACCTGAGGCGCTGGGCGCTTAGCCTGGCTCACGCAC < 41bp 1 0.268632294776378 1 0.124184370040894 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124239064 chr12:124239058 nonsynonymous SNV 1.000 5 15 hm5C_associated_SNPs_40121 0 0 1 0 2 ATP6V0A2 chr12:124238967 3'AG 124238967 Downstream 92bp
chr12 124239058 124239058 1 + T G UCEC 124239064 + 124239044 124239084 41 CTCCTACCTGAGGCTCTGGGCGCTTAGCCTGGCTCACGCAC CTCCTACCTGAGGCGCTGGGCGCTTAGCCTGGCTCACGCAC < 41bp 1 0.268632294776378 1 0.124184370040894 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124239064 chr12:124239058 nonsynonymous SNV 1.000 5 15 hm5C_associated_SNPs_40121 0 0 1 0 2 ATP6V0A2 chr12:124239084 5'GT 124239084 Upstream 27bp
chr18 77728114 77728114 1 + G T UCEC 77728106 + 77728086 77728126 41 TACTGGAAGAAATGGGAAATCGCATTGAGGACTTACAGAAG TACTGGAAGAAATGGGAAATCGCATTGATGACTTACAGAAG < 41bp 1 0.616302551027837 1 0.521259844303131 experiment 0.767394897944326 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSBP1L1 ENSG00000226742 CDS Human protein_coding chr18:77728106 chr18:77728114 nonsynonymous SNV 0.952 0 29 hm5C_associated_SNPs_40122 0 0 1 0 1 HSBP1L1 chr18:77728183 5'GT 77728183 Upstream 70bp
chr11 66834288 66834288 1 + C T UCEC 66834276 + 66834256 66834296 41 AGCGTCCTGCTGCTTTGCTTCGATGTCACCAGCCCGAACAG AGCGTCCTGCTGCTTTGCTTCGATGTCACCAGTCCGAACAG < 41bp 1 0.51037987102471 1 0.824427962303162 experiment 0.979240257950579 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RHOD ENSG00000173156 CDS Human protein_coding chr11:66834276 chr11:66834288 synonymous SNV . 0 33 hm5C_associated_SNPs_40123 0 0 0 0 2 RHOD chr11:66834209 3'AG 66834209 Downstream 80bp
chr11 66834288 66834288 1 + C T UCEC 66834276 + 66834256 66834296 41 AGCGTCCTGCTGCTTTGCTTCGATGTCACCAGCCCGAACAG AGCGTCCTGCTGCTTTGCTTCGATGTCACCAGTCCGAACAG < 41bp 1 0.51037987102471 1 0.824427962303162 experiment 0.979240257950579 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RHOD ENSG00000173156 CDS Human protein_coding chr11:66834276 chr11:66834288 synonymous SNV . 0 33 hm5C_associated_SNPs_40123 0 0 0 0 2 RHOD chr11:66834318 5'GT 66834318 Upstream 31bp
chr18 56402450 56402450 1 + G T UCEC 56402451 + 56402431 56402471 41 AAGGTGTCAAGGAGCAGAAGCTTTTGAAATCCAGCATTCTG AAGGTGTCAAGGAGCAGAATCTTTTGAAATCCAGCATTCTG < 41bp 1 0.0547226177479675 1 0.0518769323825836 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MALT1 ENSG00000172175 CDS Human protein_coding chr18:56402451 chr18:56402450 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_40124 0 0 1 0 1 MALT1 chr18:56402434 3'AG 56402434 Downstream 17bp
chr7 100334896 100334896 1 + G T UCEC 100334885 + 100334865 100334905 41 GTCCCCTTATCCTCTTGCAGCTGATGTTTGAGGGAACACGG GTCCCCTTATCCTCTTGCAGCTGATGTTTGATGGAACACGG < 41bp 1 0.198849514790593 1 0.151100128889084 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZAN ENSG00000146839 CDS Human protein_coding chr7:100334885 chr7:100334896 nonsynonymous SNV 0.698 2 32 hm5C_associated_SNPs_40125 0 0 0 0 2 ZAN chr7:100334885 3'AG 100334885 Downstream 12bp
chr7 100334896 100334896 1 + G T UCEC 100334885 + 100334865 100334905 41 GTCCCCTTATCCTCTTGCAGCTGATGTTTGAGGGAACACGG GTCCCCTTATCCTCTTGCAGCTGATGTTTGATGGAACACGG < 41bp 1 0.198849514790593 1 0.151100128889084 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZAN ENSG00000146839 CDS Human protein_coding chr7:100334885 chr7:100334896 nonsynonymous SNV 0.698 2 32 hm5C_associated_SNPs_40125 0 0 0 0 2 ZAN chr7:100334972 5'GT 100334972 Upstream 77bp
chr2 184023083 184023083 1 + G T UCEC 184023063 + 184023043 184023083 41 TTATCAATCTAAACTGCAGGCTCGGAAAGCCTTAAGCAAAG TTATCAATCTAAACTGCAGGCTCGGAAAGCCTTAAGCAAAT < 41bp 1 0.652845846351919 1 0.162805795669556 experiment 0.694308307296162 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUP35 ENSG00000163002 CDS Human protein_coding chr2:184023063 chr2:184023083 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_40126 0 0 1 0 2 NUP35 chr2:184023011 3'AG 184023011 Downstream 73bp
chr2 184023083 184023083 1 + G T UCEC 184023063 + 184023043 184023083 41 TTATCAATCTAAACTGCAGGCTCGGAAAGCCTTAAGCAAAG TTATCAATCTAAACTGCAGGCTCGGAAAGCCTTAAGCAAAT < 41bp 1 0.652845846351919 1 0.162805795669556 experiment 0.694308307296162 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUP35 ENSG00000163002 CDS Human protein_coding chr2:184023063 chr2:184023083 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_40126 0 0 1 0 2 NUP35 chr2:184023139 5'GT 184023139 Upstream 57bp
chr9 139244094 139244094 1 + C T UCEC 139244104 + 139244084 139244124 41 AGCAGGGACTCGCTACCCCTCCCCGTGAGGAGCAGGAAGTA AGCAGGGACTTGCTACCCCTCCCCGTGAGGAGCAGGAAGTA < 41bp 1 0.360566617862079 1 0.243871301412582 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139244104 chr9:139244094 nonsynonymous SNV 0.563 1 11 hm5C_associated_SNPs_40128 0 0 0 0 1 GPSM1 chr9:139244039 3'AG 139244039 Downstream 56bp
chr6 41557796 41557796 1 + C T UCEC 41557781 + 41557761 41557801 41 TTCCCAGATGGTCTCGTGCACCCCCCGACCTCGGCCGCAGC TTCCCAGATGGTCTCGTGCACCCCCCGACCTCGGCTGCAGC < 41bp 1 0.104260711400911 1 0.0252434313297272 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41557781 chr6:41557796 synonymous SNV . 0 36 hm5C_associated_SNPs_40131 0 0 1 0 2 FOXP4 chr6:41557701 3'AG 41557701 Downstream 96bp
chr6 41557796 41557796 1 + C T UCEC 41557781 + 41557761 41557801 41 TTCCCAGATGGTCTCGTGCACCCCCCGACCTCGGCCGCAGC TTCCCAGATGGTCTCGTGCACCCCCCGACCTCGGCTGCAGC < 41bp 1 0.104260711400911 1 0.0252434313297272 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41557781 chr6:41557796 synonymous SNV . 0 36 hm5C_associated_SNPs_40131 0 0 1 0 2 FOXP4 chr6:41557737 3'AG 41557737 Downstream 60bp
chr2 29159811 29159811 1 + T C UCEC 29159809 + 29159789 29159829 41 TTACAAAGAGGTTACAAGGACATCCTAATAGGTAAGATTAA TTACAAAGAGGTTACAAGGACACCCTAATAGGTAAGATTAA < 41bp 1 0.261662633692441 1 0.124296277761459 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR43 ENSG00000163811 CDS Human protein_coding chr2:29159809 chr2:29159811 synonymous SNV . 0 23 hm5C_associated_SNPs_40132 0 0 1 0 2 WDR43 chr2:29159788 3'AG 29159788 Downstream 24bp
chr2 29159811 29159811 1 + T C UCEC 29159809 + 29159789 29159829 41 TTACAAAGAGGTTACAAGGACATCCTAATAGGTAAGATTAA TTACAAAGAGGTTACAAGGACACCCTAATAGGTAAGATTAA < 41bp 1 0.261662633692441 1 0.124296277761459 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR43 ENSG00000163811 CDS Human protein_coding chr2:29159809 chr2:29159811 synonymous SNV . 0 23 hm5C_associated_SNPs_40132 0 0 1 0 2 WDR43 chr2:29159819 5'GT 29159819 Upstream 9bp
chr9 140110248 140110248 1 + G T UCEC 140110236 + 140110216 140110256 41 TCCGAGCAGCCATCCAGGAGCGTGTGGCCCAGGGCCAGACT TCCGAGCAGCCATCCAGGAGCGTGTGGCCCAGTGCCAGACT < 41bp 1 0.301518292632173 1 0.101357489824295 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110236 chr9:140110248 nonsynonymous SNV 0.141 4 33 hm5C_associated_SNPs_40133 0 0 1 0 1 NDOR1 chr9:140110257 5'GT 140110257 Upstream 10bp
chr20 57246303 57246303 1 + T G UCEC 57246308 + 57246288 57246328 41 ATTGTACAGTCCATTTCTGACCTGAATGAAATATTCAGGGA ATTGTACAGTCCATTGCTGACCTGAATGAAATATTCAGGGA < 41bp 1 0.45662386186509 1 0.239635050296783 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control STX16 ENSG00000124222;ENSG00000254995 CDS Human other chr20:57246308 chr20:57246303 nonsynonymous SNV 0.991 0 16 hm5C_associated_SNPs_40136 0 0 1 0 1 STX16 chr20:57246353 5'GT 57246353 Upstream 51bp
chr19 42397349 42397349 1 + A G UCEC 42397351 + 42397331 42397371 41 TCTTCCTCCTACAGACATACCATCTCTACCGACGAAGAAAA TCTTCCTCCTACAGACATGCCATCTCTACCGACGAAGAAAA < 41bp 1 0.0524307046500177 1 0.0263316929340363 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42397351 chr19:42397349 nonsynonymous SNV 0.982 5 19 hm5C_associated_SNPs_40137 0 0 1 0 2 ARHGEF1 chr19:42397345 3'AG 42397345 Downstream 5bp
chr19 42397349 42397349 1 + A G UCEC 42397351 + 42397331 42397371 41 TCTTCCTCCTACAGACATACCATCTCTACCGACGAAGAAAA TCTTCCTCCTACAGACATGCCATCTCTACCGACGAAGAAAA < 41bp 1 0.0524307046500177 1 0.0263316929340363 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42397351 chr19:42397349 nonsynonymous SNV 0.982 5 19 hm5C_associated_SNPs_40137 0 0 1 0 2 ARHGEF1 chr19:42397374 5'GT 42397374 Upstream 26bp
chr7 73922436 73922436 1 + A G UCEC 73922440 + 73922420 73922460 41 CTGGGTAAGCGCTGTGACGTCCCCACCAACGGCTGCGGACC CTGGGTAAGCGCTGTGGCGTCCCCACCAACGGCTGCGGACC < 41bp 1 0.528574930707565 1 0.217045307159424 experiment 0.942850138584869 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73922440 chr7:73922436 nonsynonymous SNV 0.996 4 17 hm5C_associated_SNPs_40138 0 0 1 0 2 GTF2IRD1 chr7:73922405 3'AG 73922405 Downstream 32bp
chr7 73922436 73922436 1 + A G UCEC 73922440 + 73922420 73922460 41 CTGGGTAAGCGCTGTGACGTCCCCACCAACGGCTGCGGACC CTGGGTAAGCGCTGTGGCGTCCCCACCAACGGCTGCGGACC < 41bp 1 0.528574930707565 1 0.217045307159424 experiment 0.942850138584869 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73922440 chr7:73922436 nonsynonymous SNV 0.996 4 17 hm5C_associated_SNPs_40138 0 0 1 0 2 GTF2IRD1 chr7:73922533 5'GT 73922533 Upstream 98bp
chr12 105538143 105538143 1 + C T UCEC 105538149 + 105538129 105538169 41 TAAAGCTGGATGACCGAAACCCTTTCAAAGTTGGCATGAAA TAAAGCTGGATGACTGAAACCCTTTCAAAGTTGGCATGAAA < 41bp 1 0.0333409146007592 1 0.0591758787631989 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105538149 chr12:105538143 stopgain 0.999 1 15 hm5C_associated_SNPs_40139 0 0 1 0 2 WASHC4 chr12:105538065 3'AG 105538065 Downstream 79bp
chr12 105538143 105538143 1 + C T UCEC 105538149 + 105538129 105538169 41 TAAAGCTGGATGACCGAAACCCTTTCAAAGTTGGCATGAAA TAAAGCTGGATGACTGAAACCCTTTCAAAGTTGGCATGAAA < 41bp 1 0.0333409146007592 1 0.0591758787631989 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105538149 chr12:105538143 stopgain 0.999 1 15 hm5C_associated_SNPs_40139 0 0 1 0 2 WASHC4 chr12:105538233 5'GT 105538233 Upstream 91bp
chr12 105538143 105538143 1 + C T UCEC 105538150 + 105538130 105538170 41 AAAGCTGGATGACCGAAACCCTTTCAAAGTTGGCATGAAAG AAAGCTGGATGACTGAAACCCTTTCAAAGTTGGCATGAAAG < 41bp 1 0.0466591902117794 1 0.107293397188187 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105538150 chr12:105538143 stopgain 0.999 1 14 hm5C_associated_SNPs_40140 0 0 1 0 2 WASHC4 chr12:105538065 3'AG 105538065 Downstream 79bp
chr12 105538143 105538143 1 + C T UCEC 105538150 + 105538130 105538170 41 AAAGCTGGATGACCGAAACCCTTTCAAAGTTGGCATGAAAG AAAGCTGGATGACTGAAACCCTTTCAAAGTTGGCATGAAAG < 41bp 1 0.0466591902117794 1 0.107293397188187 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105538150 chr12:105538143 stopgain 0.999 1 14 hm5C_associated_SNPs_40140 0 0 1 0 2 WASHC4 chr12:105538233 5'GT 105538233 Upstream 91bp
chr1 36029495 36029495 1 + C A UCEC 36029505 + 36029485 36029525 41 GGCCCGGCTCCTTAGCACCTCTCCAGGTAAGAACTGGGGAT GGCCCGGCTCATTAGCACCTCTCCAGGTAAGAACTGGGGAT < 41bp 1 0.687778670576834 1 0.880232572555542 experiment 0.624442658846332 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36029505 chr1:36029495 nonsynonymous SNV 0.997 1 11 hm5C_associated_SNPs_40141 0 0 1 0 1 NCDN chr1:36029510 5'GT 36029510 Upstream 16bp
chr13 76415807 76415807 1 + G A UCEC 76415812 + 76415792 76415832 41 TGTCTCTGACCACACGGGAGCCCTCTCTTGCCACCTGGGAA TGTCTCTGACCACACAGGAGCCCTCTCTTGCCACCTGGGAA < 41bp 1 0.0342147753913531 1 0.0317053198814392 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76415812 chr13:76415807 nonsynonymous SNV 0.888 1 16 hm5C_associated_SNPs_40142 0 0 1 0 1 LMO7 chr13:76415764 3'AG 76415764 Downstream 44bp
chr13 76415807 76415807 1 + G A UCEC 76415814 + 76415794 76415834 41 TCTCTGACCACACGGGAGCCCTCTCTTGCCACCTGGGAAGC TCTCTGACCACACAGGAGCCCTCTCTTGCCACCTGGGAAGC < 41bp 1 0.179581768525181 1 0.0847972333431244 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76415814 chr13:76415807 nonsynonymous SNV 0.888 1 14 hm5C_associated_SNPs_40143 0 0 1 0 1 LMO7 chr13:76415764 3'AG 76415764 Downstream 44bp
chr20 60882682 60882682 1 + G A UCEC 60882662 + 60882642 60882682 41 CTCTTCGCAGCTCCCGGAGCCAGTCGGCAGCGGTCACCCCG CTCTTCGCAGCTCCCGGAGCCAGTCGGCAGCGGTCACCCCA < 41bp 1 0.321779065250465 1 0.704301416873932 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882662 chr20:60882682 synonymous SNV . 0 41 hm5C_associated_SNPs_40144 0 0 1 0 1 ADRM1 chr20:60882652 3'AG 60882652 Downstream 31bp
chr17 72306160 72306160 1 + G A UCEC 72306164 + 72306144 72306184 41 CCCCTTCAATAGGTGTGTGACGAGGCCCTCTTCTGCCTCCG CCCCTTCAATAGGTGTATGACGAGGCCCTCTTCTGCCTCCG < 41bp 1 0.799285541928947 1 0.868570327758789 experiment 0.401428916142107 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72306164 chr17:72306160 nonsynonymous SNV 0.984 3 17 hm5C_associated_SNPs_40145 0 0 0 4 1 DNAI2 chr17:72306156 3'AG 72306156 Downstream 5bp
chr1 45973913 45973913 1 + T C UCEC 45973929 + 45973909 45973949 41 TCATTGCTGACTACGAGGTGCACCCCAACCGACGCCCCAAG TCATCGCTGACTACGAGGTGCACCCCAACCGACGCCCCAAG < 41bp 1 0.232254992048628 1 0.0528044402599335 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMACHC ENSG00000132763 CDS Human protein_coding chr1:45973929 chr1:45973913 synonymous SNV . 0 5 hm5C_associated_SNPs_40149 0 0 0 1 1 MMACHC chr1:45973884 3'AG 45973884 Downstream 30bp
chr19 41078013 41078013 1 + G A UCEC 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GGACTCCAAGGGCCCGGCATCCGGGAGCACACACAGTGGGG < 41bp 1 0.362916678170904 1 0.859188675880432 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41078013 nonsynonymous SNV 0.835 0 35 hm5C_associated_SNPs_40152 0 0 0 0 2 SPTBN4 chr19:41077925 3'AG 41077925 Downstream 89bp
chr19 41078013 41078013 1 + G A UCEC 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GGACTCCAAGGGCCCGGCATCCGGGAGCACACACAGTGGGG < 41bp 1 0.362916678170904 1 0.859188675880432 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41078013 nonsynonymous SNV 0.835 0 35 hm5C_associated_SNPs_40152 0 0 0 0 2 SPTBN4 chr19:41078098 5'GT 41078098 Upstream 86bp
chr20 48568664 48568664 1 + A G UCEC 48568680 + 48568660 48568700 41 CTCCATCATCGACCAGTGAGCAGAGTCCGTGCTTGCTATCT CTCCGTCATCGACCAGTGAGCAGAGTCCGTGCTTGCTATCT < 41bp 1 0.671450001913245 1 0.37074202299118 experiment 0.65709999617351 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF114 ENSG00000124226 CDS Human protein_coding chr20:48568680 chr20:48568664 nonsynonymous SNV 0.996 0 5 hm5C_associated_SNPs_40153 0 0 1 1 1 RNF114 chr20:48568613 3'AG 48568613 Downstream 52bp
chr9 131702890 131702890 1 + G T UCEC 131702887 + 131702867 131702907 41 TTGGCCTGCAGGTGGTGTGTCAAGAAGGATGGTCCGGGCCC TTGGCCTGCAGGTGGTGTGTCAATAAGGATGGTCCGGGCCC < 41bp 1 0.569634305249513 1 0.257389485836029 experiment 0.860731389500973 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control PHYHD1 ENSG00000175287 CDS Human protein_coding chr9:131702887 chr9:131702890 stopgain 0.995 4 24 hm5C_associated_SNPs_40154 0 0 1 0 1 PHYHD1 chr9:131702878 3'AG 131702878 Downstream 13bp
chr15 40509810 40509810 1 + G A UCEC 40509796 + 40509776 40509816 41 GTGCAGCTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGT GTGCAGCTGGATGTTTTTACCCTCAGCGGCTTTCAGACTGT < 41bp 1 0.319752448807852 1 0.212749838829041 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BUB1B ENSG00000156970;ENSG00000259288 CDS Human other chr15:40509796 chr15:40509810 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_40155 0 0 1 0 1 BUB1B chr15:40509868 5'GT 40509868 Upstream 59bp
chr15 40509810 40509810 1 + G A UCEC 40509802 + 40509782 40509822 41 CTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGTACAGAT CTGGATGTTTTTACCCTCAGCGGCTTTCAGACTGTACAGAT < 41bp 1 0.361868208402856 1 0.305477678775787 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BUB1B ENSG00000156970;ENSG00000259288 CDS Human other chr15:40509802 chr15:40509810 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_40156 0 0 1 0 1 BUB1B chr15:40509868 5'GT 40509868 Upstream 59bp
chr17 7402796 7402796 1 + G A UCEC 7402808 + 7402788 7402828 41 AGAGAGACGTCTTCCTGGAGCGGGTGTGTGGTCCAAATGGA AGAGAGACATCTTCCTGGAGCGGGTGTGTGGTCCAAATGGA < 41bp 1 0.483407343890668 1 0.540839314460754 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2A ENSG00000181222 CDS Human protein_coding chr17:7402808 chr17:7402796 nonsynonymous SNV 0.979 1 9 hm5C_associated_SNPs_40158 0 0 0 0 1 POLR2A chr17:7402810 5'GT 7402810 Upstream 15bp
chr2 32656066 32656066 1 + A C UCEC 32656070 + 32656050 32656090 41 TAGAAGTTCAACAAGAACAGCAGCAAAGGAGGCATCCTCAA TAGAAGTTCAACAAGACCAGCAGCAAAGGAGGCATCCTCAA < 41bp 1 0.273154978141963 1 0.157524734735489 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32656070 chr2:32656066 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_40159 0 0 1 0 1 BIRC6 chr2:32656158 5'GT 32656158 Upstream 93bp
chr7 142458446 142458446 1 + C A UCEC 142458431 + 142458411 142458451 41 GCCCCCTTTGATGATGATGACAAGATCGTTGGGGGCTACAA GCCCCCTTTGATGATGATGACAAGATCGTTGGGGGATACAA < 41bp 1 0.653937025663904 1 0.449533343315125 experiment 0.692125948672192 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458431 chr7:142458446 synonymous SNV . 0 36 hm5C_associated_SNPs_40161 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 41bp
chr7 142458446 142458446 1 + C A UCEC 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATGACAAGATCGTTGGGGGATACAACTGTGA < 41bp 1 0.206079932000342 1 0.147086322307587 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458446 synonymous SNV . 0 30 hm5C_associated_SNPs_40162 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 41bp
chr7 142458446 142458446 1 + C A UCEC 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGTTGGGGGATACAACTGTGAGGAGAATTCTGT < 41bp 1 0.251516832151321 1 0.205217480659485 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458446 synonymous SNV . 0 18 hm5C_associated_SNPs_40163 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 41bp
chr7 142458446 142458446 1 + C A UCEC 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGATACAACTGTGAGGAGAATTCTGTCCC < 41bp 1 0.414537223993257 1 0.217180728912354 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458446 synonymous SNV . 0 15 hm5C_associated_SNPs_40164 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 41bp
chr7 142458446 142458446 1 + C A UCEC 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC ATACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC < 41bp 1 0.166548741451065 1 0.223908364772797 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458446 synonymous SNV . 0 1 hm5C_associated_SNPs_40165 0 0 0 0 1 PRSS1 chr7:142458406 3'AG 142458406 Downstream 41bp
chr16 845775 845775 1 + G T UCEC 845778 + 845758 845798 41 GCCGGGCCACGCCCCAGGCCCTGCTCCTCGATGCCCTCTGC GCCGGGCCACGCCCCAGTCCCTGCTCCTCGATGCCCTCTGC < 41bp 1 0.508197945536747 1 0.0778591632843018 experiment 0.983604108926506 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845778 chr16:845775 nonsynonymous SNV 0.073 0 18 hm5C_associated_SNPs_40166 0 0 1 0 2 CHTF18 chr16:845685 3'AG 845685 Downstream 91bp
chr16 845775 845775 1 + G T UCEC 845778 + 845758 845798 41 GCCGGGCCACGCCCCAGGCCCTGCTCCTCGATGCCCTCTGC GCCGGGCCACGCCCCAGTCCCTGCTCCTCGATGCCCTCTGC < 41bp 1 0.508197945536747 1 0.0778591632843018 experiment 0.983604108926506 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845778 chr16:845775 nonsynonymous SNV 0.073 0 18 hm5C_associated_SNPs_40166 0 0 1 0 2 CHTF18 chr16:845834 5'GT 845834 Upstream 60bp
chr2 172602321 172602321 1 + G A UCEC 172602316 + 172602296 172602336 41 TTTTAAATGACTTTAGGTACCAACTGCCAGCATTTCTGTGG TTTTAAATGACTTTAGGTACCAACTACCAGCATTTCTGTGG < 41bp 1 0.451515654039114 1 0.0831904709339142 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DYNC1I2 ENSG00000077380 CDS Human protein_coding chr2:172602316 chr2:172602321 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_40170 0 0 0 0 1 DYNC1I2 chr2:172602312 3'AG 172602312 Downstream 10bp
chr7 4796677 4796677 1 + G A UCEC 4796673 + 4796653 4796693 41 ACCGTTACTTTATCAAAGTCCCACGTTCCCAGGAGGAGCCT ACCGTTACTTTATCAAAGTCCCACATTCCCAGGAGGAGCCT < 41bp 1 0.156235998057185 1 0.0429748892784119 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4796673 chr7:4796677 nonsynonymous SNV 0.995 5 25 hm5C_associated_SNPs_40172 0 0 1 0 1 FOXK1 chr7:4796625 3'AG 4796625 Downstream 53bp
chr4 148555336 148555336 1 + A G UCEC 148555322 + 148555302 148555342 41 GAAAACTTTATATTAAAGGACGGACAGTCAGGGGACATCCC GAAAACTTTATATTAAAGGACGGACAGTCAGGGGGCATCCC < 41bp 1 0.158031150842796 1 0.0805226266384125 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM184C ENSG00000164168 CDS Human protein_coding chr4:148555322 chr4:148555336 synonymous SNV . 0 35 hm5C_associated_SNPs_40176 0 0 1 0 1 TMEM184C chr4:148555320 3'AG 148555320 Downstream 17bp
chr7 79842049 79842049 1 + C T UCEC 79842035 + 79842015 79842055 41 ATTTTTTTCTATTACAGAACCGAATGCATGAAAGCATGAAA ATTTTTTTCTATTACAGAACCGAATGCATGAAAGTATGAAA < 41bp 1 0.179835879595383 1 0.126738160848618 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79842035 chr7:79842049 synonymous SNV . 0 35 hm5C_associated_SNPs_40177 0 0 0 0 1 GNAI1 chr7:79842032 3'AG 79842032 Downstream 18bp
chr2 201485942 201485942 1 + A G UCEC 201485944 + 201485924 201485964 41 CTTCTGCTTTTTTACTGAAGCTGAGAAATTTCTGGCGACAG CTTCTGCTTTTTTACTGAGGCTGAGAAATTTCTGGCGACAG < 41bp 1 0.382263541107757 1 0.192349910736084 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AOX1 ENSG00000138356 CDS Human protein_coding chr2:201485944 chr2:201485942 synonymous SNV . 0 19 hm5C_associated_SNPs_40178 0 0 0 0 2 AOX1 chr2:201485843 3'AG 201485843 Downstream 100bp
chr2 201485942 201485942 1 + A G UCEC 201485944 + 201485924 201485964 41 CTTCTGCTTTTTTACTGAAGCTGAGAAATTTCTGGCGACAG CTTCTGCTTTTTTACTGAGGCTGAGAAATTTCTGGCGACAG < 41bp 1 0.382263541107757 1 0.192349910736084 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AOX1 ENSG00000138356 CDS Human protein_coding chr2:201485944 chr2:201485942 synonymous SNV . 0 19 hm5C_associated_SNPs_40178 0 0 0 0 2 AOX1 chr2:201485969 5'GT 201485969 Upstream 28bp
chr7 100478970 100478970 1 + C T UCEC 100478967 + 100478947 100478987 41 ATCGGGACTATGACCGGAATCGGCGAGAGCGCTTCTCGCCA ATCGGGACTATGACCGGAATCGGTGAGAGCGCTTCTCGCCA < 41bp 1 0.749667079009316 1 0.850416421890259 experiment 0.500665841981367 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100478967 chr7:100478970 stopgain 0.491 1 24 hm5C_associated_SNPs_40179 0 0 1 0 2 SRRT chr7:100478906 3'AG 100478906 Downstream 65bp
chr7 100478970 100478970 1 + C T UCEC 100478967 + 100478947 100478987 41 ATCGGGACTATGACCGGAATCGGCGAGAGCGCTTCTCGCCA ATCGGGACTATGACCGGAATCGGTGAGAGCGCTTCTCGCCA < 41bp 1 0.749667079009316 1 0.850416421890259 experiment 0.500665841981367 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100478967 chr7:100478970 stopgain 0.491 1 24 hm5C_associated_SNPs_40179 0 0 1 0 2 SRRT chr7:100479034 5'GT 100479034 Upstream 65bp
chr7 55259433 55259433 1 + C T UCEC 55259432 + 55259412 55259452 41 GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGA GGCATGAACTACTTGGAGGACTGTCGCTTGGTGCACCGCGA < 41bp 1 0.185186361130731 1 0.160867035388947 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55259432 chr7:55259433 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_40195 1 0 1 0 1 EGFR chr7:55259412 3'AG 55259412 Downstream 22bp
chr6 159086550 159086550 1 + C T UCEC 159086565 + 159086545 159086585 41 GGCGCCGTGTGCCGGGGCTGCAGCCACCGCGTGTGTGCCCA GGCGCTGTGTGCCGGGGCTGCAGCCACCGCGTGTGTGCCCA < 41bp 1 0.635766399220072 1 0.547603607177734 experiment 0.728467201559855 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159086565 chr6:159086550 synonymous SNV . 0 6 hm5C_associated_SNPs_40196 0 0 0 0 1 SYTL3 chr6:159086645 5'GT 159086645 Upstream 96bp
chr11 108151823 108151823 1 + C T UCEC 108151830 + 108151810 108151850 41 GTAGCCCTATCTGCGAAAAACAGGCTTTGTTTGCCCTGTGT GTAGCCCTATCTGTGAAAAACAGGCTTTGTTTGCCCTGTGT < 41bp 1 0.313389015226977 1 0.213575839996338 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108151830 chr11:108151823 synonymous SNV . 0 14 hm5C_associated_SNPs_40197 3 0 1 0 1 ATM chr11:108151895 5'GT 108151895 Upstream 73bp
chr19 45261582 45261582 1 + T C UCEC 45261574 + 45261554 45261594 41 TCAGCGTCCGGCCGCGGGCTCCTCCCGCTGGTGCGCACGCT TCAGCGTCCGGCCGCGGGCTCCTCCCGCCGGTGCGCACGCT < 41bp 1 0.0537865900256328 1 0.179066091775894 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCL3 ENSG00000069399 CDS Human protein_coding chr19:45261574 chr19:45261582 nonsynonymous SNV 0.997 3 29 hm5C_associated_SNPs_40198 0 0 0 0 1 BCL3 chr19:45261503 3'AG 45261503 Downstream 80bp
chr4 140265354 140265354 1 + G T UCEC 140265344 + 140265324 140265364 41 TTATATCCATATACAGACATCCCCTGACAAGGTGGATTATG TTATATCCATATACAGACATCCCCTGACAATGTGGATTATG < 41bp 1 0.0942845898234704 1 0.0443922877311707 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAA15 ENSG00000164134 CDS Human protein_coding chr4:140265344 chr4:140265354 nonsynonymous SNV 0.999 1 31 hm5C_associated_SNPs_40199 0 0 1 0 1 NAA15 chr4:140265340 3'AG 140265340 Downstream 15bp
chr16 70500156 70500156 1 + A G UCEC 70500158 + 70500138 70500178 41 TGCTGGACATCATGACCTATCGGGTGAGGCTGGGTGGTGGC TGCTGGACATCATGACCTGTCGGGTGAGGCTGGGTGGTGGC < 41bp 1 0.721381642204181 1 0.735982358455658 experiment 0.557236715591638 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FUK ENSG00000157353 CDS Human protein_coding chr16:70500158 chr16:70500156 nonsynonymous SNV 0.889 0 19 hm5C_associated_SNPs_40201 0 0 1 0 1 FUK chr16:70500160 5'GT 70500160 Upstream 5bp
chr14 68042642 68042642 1 + C T UCEC 68042632 + 68042612 68042652 41 GACTATGAGGCTGGAGGAACCAGACGGTTGCTTTCCTCCCA GACTATGAGGCTGGAGGAACCAGACGGTTGTTTTCCTCCCA < 41bp 1 0.561099471841186 1 0.833063781261444 experiment 0.877801056317628 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68042632 chr14:68042642 nonsynonymous SNV 0.899 2 31 hm5C_associated_SNPs_40203 0 0 0 0 1 PLEKHH1 chr14:68042722 5'GT 68042722 Upstream 81bp
chrX 49853367 49853367 1 + C A UCEC 49853386 + 49853366 49853406 41 CCTCTTTATCCCTAGCATGGCTGTTGGTGCTATAGCAGGTC CATCTTTATCCCTAGCATGGCTGTTGGTGCTATAGCAGGTC < 41bp 1 0.140045691911279 1 0.173361390829086 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLCN5 ENSG00000171365 CDS Human protein_coding chrX:49853386 chrX:49853367 nonsynonymous SNV 0.999 4 2 hm5C_associated_SNPs_40204 0 0 0 0 1 CLCN5 chrX:49853355 3'AG 49853355 Downstream 13bp
chr17 73058324 73058324 1 + C T UCEC 73058313 + 73058293 73058333 41 AATAATTCTACCAATGGCATCGTCATAGAGCCGAGCGAAAA AATAATTCTACCAATGGCATCGTCATAGAGCTGAGCGAAAA < 41bp 1 0.371084797992849 1 0.400296121835709 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KCTD2 ENSG00000180901 CDS Human protein_coding chr17:73058313 chr17:73058324 nonsynonymous SNV 0.991 1 32 hm5C_associated_SNPs_40205 0 0 0 0 1 KCTD2 chr17:73058340 5'GT 73058340 Upstream 17bp
chr19 50902136 50902136 1 + G T UCEC 50902140 + 50902120 50902160 41 GCGGCGGCCAGGCCCAGGGCCCGGGGTGCCCCCAAAGCGGG GCGGCGGCCAGGCCCATGGCCCGGGGTGCCCCCAAAGCGGG < 41bp 1 0.595563653966497 1 0.814493417739868 experiment 0.808872692067007 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50902140 chr19:50902136 nonsynonymous SNV 0.988 1 17 hm5C_associated_SNPs_40208 0 0 1 0 1 POLD1 chr19:50902105 3'AG 50902105 Downstream 32bp
chr19 50902136 50902136 1 + G T UCEC 50902141 + 50902121 50902161 41 CGGCGGCCAGGCCCAGGGCCCGGGGTGCCCCCAAAGCGGGC CGGCGGCCAGGCCCATGGCCCGGGGTGCCCCCAAAGCGGGC < 41bp 1 0.749526234289657 1 0.861732721328735 experiment 0.500947531420686 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50902141 chr19:50902136 nonsynonymous SNV 0.988 1 16 hm5C_associated_SNPs_40209 0 0 1 0 1 POLD1 chr19:50902105 3'AG 50902105 Downstream 32bp
chr19 1979220 1979220 1 + C T UCEC 1979211 + 1979191 1979231 41 CTGGGCCACATGTTCATGTACTTCCTGCGCGGCAGCCTCCC CTGGGCCACATGTTCATGTACTTCCTGCGTGGCAGCCTCCC < 41bp 1 0.111365431891216 1 0.0201103091239929 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1979211 chr19:1979220 synonymous SNV . 0 30 hm5C_associated_SNPs_40210 0 0 1 0 2 CSNK1G2 chr19:1979162 3'AG 1979162 Downstream 59bp
chr19 1979220 1979220 1 + C T UCEC 1979211 + 1979191 1979231 41 CTGGGCCACATGTTCATGTACTTCCTGCGCGGCAGCCTCCC CTGGGCCACATGTTCATGTACTTCCTGCGTGGCAGCCTCCC < 41bp 1 0.111365431891216 1 0.0201103091239929 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1979211 chr19:1979220 synonymous SNV . 0 30 hm5C_associated_SNPs_40210 0 0 1 0 2 CSNK1G2 chr19:1979247 5'GT 1979247 Upstream 28bp
chr11 6414510 6414510 1 + T G UCEC 6414500 + 6414480 6414520 41 GGTCTCCGCCTCATCTCTCTCAATATGAATTTTTGTTCCCG GGTCTCCGCCTCATCTCTCTCAATATGAATGTTTGTTCCCG < 41bp 1 0.497050983086358 1 0.69918692111969 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6414500 chr11:6414510 nonsynonymous SNV 1.000 5 31 hm5C_associated_SNPs_40211 0 0 1 0 1 SMPD1 chr11:6414446 3'AG 6414446 Downstream 65bp
chr4 146468000 146468000 1 + C T UCEC 146468006 + 146467986 146468026 41 TCCAACAATAAGAACCGTTTCTGCCTTGGGCTGCTCTCCAA TCCAACAATAAGAATCGTTTCTGCCTTGGGCTGCTCTCCAA < 41bp 1 0.692141253490398 1 0.108575791120529 experiment 0.615717493019205 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146468006 chr4:146468000 synonymous SNV . 0 15 hm5C_associated_SNPs_40212 0 0 1 0 1 SMAD1 chr4:146468076 5'GT 146468076 Upstream 77bp
chr19 806424 806424 1 + C T UCEC 806441 + 806421 806461 41 GAACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGG GAATGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGG < 41bp 1 0.295758610182719 1 0.0476390421390533 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806441 chr19:806424 synonymous SNV . 0 4 hm5C_associated_SNPs_40213 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 17bp
chr19 806424 806424 1 + C T UCEC 806442 + 806422 806462 41 AACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGC AATGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGC < 41bp 1 0.391156319747496 1 0.124287933111191 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806442 chr19:806424 synonymous SNV . 0 3 hm5C_associated_SNPs_40214 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 17bp
chr19 806424 806424 1 + C T UCEC 806443 + 806423 806463 41 ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCG ATGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCG < 41bp 1 0.413243405122501 1 0.0302070677280426 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806443 chr19:806424 synonymous SNV . 0 2 hm5C_associated_SNPs_40215 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 17bp
chr19 806424 806424 1 + C T UCEC 806444 + 806424 806464 41 CGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG TGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG < 41bp 1 0.523884558041383 1 0.164771974086761 experiment 0.952230883917234 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806444 chr19:806424 synonymous SNV . 0 1 hm5C_associated_SNPs_40216 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 17bp
chrX 153696537 153696537 1 + C T UCEC 153696529 + 153696509 153696549 41 ACGCCGTGCGCGTGCTCTTCCCGGGCATCGAGGCCCACCCG ACGCCGTGCGCGTGCTCTTCCCGGGCATTGAGGCCCACCCG < 41bp 1 0.61000643940616 1 0.894956469535828 experiment 0.77998712118768 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696529 chrX:153696537 synonymous SNV . 0 29 hm5C_associated_SNPs_40217 0 0 1 0 1 PLXNA3 chrX:153696567 5'GT 153696567 Upstream 31bp
chr8 25167994 25167994 1 + G A UCEC 25168004 + 25167984 25168024 41 ACACTTGGTTGATAGATCAACAGCAATAGCCCGGAAGATGG ACACTTGGTTAATAGATCAACAGCAATAGCCCGGAAGATGG < 41bp 1 0.53920304784823 1 0.200846642255783 experiment 0.921593904303541 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25168004 chr8:25167994 nonsynonymous SNV 0.997 1 11 hm5C_associated_SNPs_40218 0 0 1 0 1 DOCK5 chr8:25168048 5'GT 25168048 Upstream 55bp
chr5 159344772 159344772 1 + C T UCEC 159344770 + 159344750 159344790 41 GCTGTCAAACTTTTTAAGTTCTCCAGGGAAAAGAAAGCAGC GCTGTCAAACTTTTTAAGTTCTTCAGGGAAAAGAAAGCAGC < 41bp 1 0.321348260067176 1 0.682891249656677 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout ADRA1B ENSG00000170214 CDS Human protein_coding chr5:159344770 chr5:159344772 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_40219 0 0 0 0 1 ADRA1B chr5:159344861 5'GT 159344861 Upstream 90bp
chr17 52991186 52991186 1 + C T UCEC 52991196 + 52991176 52991216 41 TTAAGAAAGGCGTTCAGTTTCCTCCCTCAGAAGCAGAGGCT TTAAGAAAGGTGTTCAGTTTCCTCCCTCAGAAGCAGAGGCT < 41bp 1 0.167171627837374 1 0.0526689291000366 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52991196 chr17:52991186 synonymous SNV . 0 11 hm5C_associated_SNPs_40220 0 0 1 0 1 TOM1L1 chr17:52991234 5'GT 52991234 Upstream 49bp
chr4 79396727 79396727 1 + T C UCEC 79396708 + 79396688 79396728 41 AGGCACCGCCAGCTCCAGCTCCAGGGTCAGCTCCCAACCTG AGGCACCGCCAGCTCCAGCTCCAGGGTCAGCTCCCAACCCG < 41bp 1 0.38453419310433 1 0.930269420146942 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79396708 chr4:79396727 synonymous SNV . 0 40 hm5C_associated_SNPs_40221 0 0 0 0 1 FRAS1 chr4:79396760 5'GT 79396760 Upstream 34bp
chr1 156883205 156883205 1 + G A UCEC 156883191 + 156883171 156883211 41 GTCCCCTCTTAGGTTCCAGGCCCGCTCTTTGCCAGCCTGCA GTCCCCTCTTAGGTTCCAGGCCCGCTCTTTGCCAACCTGCA < 41bp 1 0.0881678765522927 1 0.0374262630939484 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156883191 chr1:156883205 nonsynonymous SNV 0.850 1 35 hm5C_associated_SNPs_40224 0 0 1 0 1 PEAR1 chr1:156883183 3'AG 156883183 Downstream 23bp
chr11 66512362 66512362 1 + T C UCEC 66512342 + 66512322 66512362 41 TACCCTTCGACTGGGCGTTGCCGCTGTTCCCTGCGCGGCAT TACCCTTCGACTGGGCGTTGCCGCTGTTCCCTGCGCGGCAC < 41bp 1 0.556767056048728 1 0.354421555995941 experiment 0.886465887902544 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C11orf80 ENSG00000173715 CDS Human protein_coding chr11:66512342 chr11:66512362 nonsynonymous SNV 0.738 0 41 hm5C_associated_SNPs_40229 0 0 1 0 1 C11orf80 chr11:66512390 5'GT 66512390 Upstream 29bp
chr6 44218106 44218106 1 + G T UCEC 44218121 + 44218101 44218141 41 ATAAAGATGATGAAGAAAAACCCAAGATCGAAGATGTGGGT ATAAATATGATGAAGAAAAACCCAAGATCGAAGATGTGGGT < 41bp 1 0.531325645877795 1 0.189257353544235 experiment 0.93734870824441 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44218121 chr6:44218106 nonsynonymous SNV 0.990 1 6 hm5C_associated_SNPs_40232 0 0 1 0 1 HSP90AB1 chr6:44218028 3'AG 44218028 Downstream 79bp
chr1 228403517 228403517 1 + G T UCEC 228403511 + 228403491 228403531 41 GCCAACGGCATTGAGAGCAGCATCCGGATGGAGGTCCGGGG GCCAACGGCATTGAGAGCAGCATCCGTATGGAGGTCCGGGG < 41bp 1 0.0495537979464024 1 0.106544762849808 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228403511 chr1:228403517 synonymous SNV . 0 27 hm5C_associated_SNPs_40233 0 0 0 0 1 OBSCN chr1:228403530 5'GT 228403530 Upstream 14bp
chr1 228403517 228403517 1 + G T UCEC 228403514 + 228403494 228403534 41 AACGGCATTGAGAGCAGCATCCGGATGGAGGTCCGGGGTAG AACGGCATTGAGAGCAGCATCCGTATGGAGGTCCGGGGTAG < 41bp 1 0.0860475299291872 1 0.0946514010429382 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OBSCN ENSG00000154358 CDS Human protein_coding chr1:228403514 chr1:228403517 synonymous SNV . 0 24 hm5C_associated_SNPs_40234 0 0 0 0 1 OBSCN chr1:228403530 5'GT 228403530 Upstream 14bp
chrX 70519853 70519853 1 + G A UCEC 70519864 + 70519844 70519884 41 GGGCAATTGGTGGAACTCCTCCTGCATTCAACCGTGCAGCT GGGCAATTGATGGAACTCCTCCTGCATTCAACCGTGCAGCT < 41bp 1 0.197451928475073 1 0.186262547969818 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70519864 chrX:70519853 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_40236 0 0 1 0 1 NONO chrX:70519792 3'AG 70519792 Downstream 62bp
chr16 78143686 78143686 1 + G A UCEC 78143695 + 78143675 78143715 41 ATTTGCCATACGGATGGGAACAAGAAACTGATGAGAACGGA ATTTGCCATACAGATGGGAACAAGAAACTGATGAGAACGGA < 41bp 1 0.337417413440458 1 0.428309142589569 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WWOX ENSG00000186153 CDS Human protein_coding chr16:78143695 chr16:78143686 nonsynonymous SNV 0.977 4 12 hm5C_associated_SNPs_40239 0 0 1 0 2 WWOX chr16:78143675 3'AG 78143675 Downstream 12bp
chr16 78143686 78143686 1 + G A UCEC 78143695 + 78143675 78143715 41 ATTTGCCATACGGATGGGAACAAGAAACTGATGAGAACGGA ATTTGCCATACAGATGGGAACAAGAAACTGATGAGAACGGA < 41bp 1 0.337417413440458 1 0.428309142589569 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WWOX ENSG00000186153 CDS Human protein_coding chr16:78143695 chr16:78143686 nonsynonymous SNV 0.977 4 12 hm5C_associated_SNPs_40239 0 0 1 0 2 WWOX chr16:78143732 5'GT 78143732 Upstream 47bp
chr19 7528745 7528745 1 + G T UCEC 7528733 + 7528713 7528753 41 TCCAGAGCCTGATCTGCAGGCAGCTGGGCAGCGCCAACGGC TCCAGAGCCTGATCTGCAGGCAGCTGGGCAGCTCCAACGGC < 41bp 1 0.381435524783002 1 0.453789710998535 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7528733 chr19:7528745 nonsynonymous SNV 0.025 0 33 hm5C_associated_SNPs_40245 0 0 0 0 1 ARHGEF18 chr19:7528704 3'AG 7528704 Downstream 42bp
chr3 57294018 57294018 1 + G A UCEC 57294032 + 57294012 57294052 41 AGAATCGCATTTATTAGTCACTTGTGACTGTTTAAAGTAAG AGAATCACATTTATTAGTCACTTGTGACTGTTTAAAGTAAG < 41bp 1 0.130995483940352 1 0.0660634934902191 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control APPL1 ENSG00000157500 CDS Human protein_coding chr3:57294032 chr3:57294018 synonymous SNV . 0 7 hm5C_associated_SNPs_40247 0 0 1 0 1 APPL1 chr3:57294047 5'GT 57294047 Upstream 30bp
chr20 39793976 39793976 1 + G A UCEC 39793996 + 39793976 39794016 41 GCATCCTCTACCTGGAGGACCCTGTGAACCACGTGAGGACT ACATCCTCTACCTGGAGGACCCTGTGAACCACGTGAGGACT < 41bp 1 0.0535400838210083 1 0.122837662696838 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39793996 chr20:39793976 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_40248 0 0 1 0 2 PLCG1 chr20:39793885 3'AG 39793885 Downstream 92bp
chr20 39793976 39793976 1 + G A UCEC 39793996 + 39793976 39794016 41 GCATCCTCTACCTGGAGGACCCTGTGAACCACGTGAGGACT ACATCCTCTACCTGGAGGACCCTGTGAACCACGTGAGGACT < 41bp 1 0.0535400838210083 1 0.122837662696838 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39793996 chr20:39793976 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_40248 0 0 1 0 2 PLCG1 chr20:39794007 5'GT 39794007 Upstream 32bp
chr17 38609317 38609317 1 + G A UCEC 38609301 + 38609281 38609321 41 AGCGCCCATGACCGCAGGTGCCTGCAGAAGCACTTCGCCAA AGCGCCCATGACCGCAGGTGCCTGCAGAAGCACTTCACCAA < 41bp 1 0.0966843673439178 1 0.119398534297943 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38609301 chr17:38609317 nonsynonymous SNV 0.751 0 37 hm5C_associated_SNPs_40249 0 0 1 0 2 IGFBP4 chr17:38609237 3'AG 38609237 Downstream 81bp
chr17 38609317 38609317 1 + G A UCEC 38609301 + 38609281 38609321 41 AGCGCCCATGACCGCAGGTGCCTGCAGAAGCACTTCGCCAA AGCGCCCATGACCGCAGGTGCCTGCAGAAGCACTTCACCAA < 41bp 1 0.0966843673439178 1 0.119398534297943 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38609301 chr17:38609317 nonsynonymous SNV 0.751 0 37 hm5C_associated_SNPs_40249 0 0 1 0 2 IGFBP4 chr17:38609394 5'GT 38609394 Upstream 78bp
chr2 228148532 228148532 1 + T C UCEC 228148543 + 228148523 228148563 41 CATTGGCCCTCCAGGGCCCCCTGGGAACCCAGGCACACCAG CATTGGCCCCCCAGGGCCCCCTGGGAACCCAGGCACACCAG < 41bp 1 0.656019360680536 1 0.561778366565704 experiment 0.687961278638929 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228148543 chr2:228148532 synonymous SNV . 0 10 hm5C_associated_SNPs_40251 0 0 0 0 2 COL4A3 chr2:228148483 3'AG 228148483 Downstream 50bp
chr2 228148532 228148532 1 + T C UCEC 228148543 + 228148523 228148563 41 CATTGGCCCTCCAGGGCCCCCTGGGAACCCAGGCACACCAG CATTGGCCCCCCAGGGCCCCCTGGGAACCCAGGCACACCAG < 41bp 1 0.656019360680536 1 0.561778366565704 experiment 0.687961278638929 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228148543 chr2:228148532 synonymous SNV . 0 10 hm5C_associated_SNPs_40251 0 0 0 0 2 COL4A3 chr2:228148572 5'GT 228148572 Upstream 41bp
chr11 47600880 47600880 1 + A G UCEC 47600875 + 47600855 47600895 41 GAGGCGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATG GAGGCGGGAGAGCGCCGGGGCCGACGCGCGCCGTGAGTATG < 41bp 1 0.12738662888272 1 0.111426562070847 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600875 chr11:47600880 nonsynonymous SNV 0.995 0 26 hm5C_associated_SNPs_40252 0 0 1 0 2 NDUFS3 chr11:47600821 3'AG 47600821 Downstream 60bp
chr11 47600880 47600880 1 + A G UCEC 47600875 + 47600855 47600895 41 GAGGCGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATG GAGGCGGGAGAGCGCCGGGGCCGACGCGCGCCGTGAGTATG < 41bp 1 0.12738662888272 1 0.111426562070847 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600875 chr11:47600880 nonsynonymous SNV 0.995 0 26 hm5C_associated_SNPs_40252 0 0 1 0 2 NDUFS3 chr11:47600886 5'GT 47600886 Upstream 7bp
chr11 47600880 47600880 1 + A G UCEC 47600876 + 47600856 47600896 41 AGGCGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATGT AGGCGGGAGAGCGCCGGGGCCGACGCGCGCCGTGAGTATGT < 41bp 1 0.710712826184056 1 0.262976258993149 experiment 0.578574347631888 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600876 chr11:47600880 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_40253 0 0 1 0 2 NDUFS3 chr11:47600821 3'AG 47600821 Downstream 60bp
chr11 47600880 47600880 1 + A G UCEC 47600876 + 47600856 47600896 41 AGGCGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATGT AGGCGGGAGAGCGCCGGGGCCGACGCGCGCCGTGAGTATGT < 41bp 1 0.710712826184056 1 0.262976258993149 experiment 0.578574347631888 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600876 chr11:47600880 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_40253 0 0 1 0 2 NDUFS3 chr11:47600886 5'GT 47600886 Upstream 7bp
chr11 47600880 47600880 1 + A G UCEC 47600885 + 47600865 47600905 41 AGCGCCGGGGCCGACACGCGCCGTGAGTATGTGCGGGCAGC AGCGCCGGGGCCGACGCGCGCCGTGAGTATGTGCGGGCAGC < 41bp 1 0.273288574884511 1 0.172491788864136 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600885 chr11:47600880 nonsynonymous SNV 0.995 0 16 hm5C_associated_SNPs_40254 0 0 1 0 2 NDUFS3 chr11:47600821 3'AG 47600821 Downstream 60bp
chr11 47600880 47600880 1 + A G UCEC 47600885 + 47600865 47600905 41 AGCGCCGGGGCCGACACGCGCCGTGAGTATGTGCGGGCAGC AGCGCCGGGGCCGACGCGCGCCGTGAGTATGTGCGGGCAGC < 41bp 1 0.273288574884511 1 0.172491788864136 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600885 chr11:47600880 nonsynonymous SNV 0.995 0 16 hm5C_associated_SNPs_40254 0 0 1 0 2 NDUFS3 chr11:47600886 5'GT 47600886 Upstream 7bp
chr11 47600880 47600880 1 + A G UCEC 47600886 + 47600866 47600906 41 GCGCCGGGGCCGACACGCGCCGTGAGTATGTGCGGGCAGCG GCGCCGGGGCCGACGCGCGCCGTGAGTATGTGCGGGCAGCG < 41bp 1 0.752211874169975 1 0.196259200572968 experiment 0.49557625166005 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600886 chr11:47600880 nonsynonymous SNV 0.995 0 15 hm5C_associated_SNPs_40255 0 0 1 0 2 NDUFS3 chr11:47600821 3'AG 47600821 Downstream 60bp
chr11 47600880 47600880 1 + A G UCEC 47600886 + 47600866 47600906 41 GCGCCGGGGCCGACACGCGCCGTGAGTATGTGCGGGCAGCG GCGCCGGGGCCGACGCGCGCCGTGAGTATGTGCGGGCAGCG < 41bp 1 0.752211874169975 1 0.196259200572968 experiment 0.49557625166005 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600886 chr11:47600880 nonsynonymous SNV 0.995 0 15 hm5C_associated_SNPs_40255 0 0 1 0 2 NDUFS3 chr11:47600886 5'GT 47600886 Upstream 7bp
chrX 67741218 67741218 1 + C A UCEC 67741231 + 67741211 67741251 41 CAGAATGCTGCAAAGAGACTCTGCAGATAGTGAAAAAGATG CAGAATGATGCAAAGAGACTCTGCAGATAGTGAAAAAGATG < 41bp 1 0.727499999010585 1 0.402679234743118 experiment 0.54500000197883 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YIPF6 ENSG00000181704 CDS Human protein_coding chrX:67741231 chrX:67741218 nonsynonymous SNV 0.696 4 8 hm5C_associated_SNPs_40256 0 0 1 0 1 YIPF6 chrX:67741214 3'AG 67741214 Downstream 5bp
chr16 628387 628387 1 + C T UCEC 628379 + 628359 628399 41 TGGCCCCTGTGTCCCTGCAGCACGTGGCCGAGGAGCTCCAG TGGCCCCTGTGTCCCTGCAGCACGTGGCTGAGGAGCTCCAG < 41bp 1 0.396093135589358 1 0.319692820310593 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PIGQ ENSG00000007541 CDS Human protein_coding chr16:628379 chr16:628387 synonymous SNV . 0 29 hm5C_associated_SNPs_40257 0 0 1 0 1 PIGQ chr16:628379 3'AG 628379 Downstream 9bp
chr9 100405542 100405542 1 + A G UCEC 100405545 + 100405525 100405565 41 ATTAGTTGGACTACTGAATGCCAGGAATTACAATTTTGGTG ATTAGTTGGACTACTGAGTGCCAGGAATTACAATTTTGGTG < 41bp 1 0.261614222181113 1 0.445479840040207 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100405545 chr9:100405542 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_40258 0 0 1 0 1 NCBP1 chr9:100405486 3'AG 100405486 Downstream 57bp
chr20 61450582 61450582 1 + G T UCEC 61450587 + 61450567 61450607 41 TGCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAAC TGCACAGGGACCAAATGGGGCCCCAGGAAAGCCGGGGAAAC < 41bp 1 0.347075885706104 1 0.0726353824138641 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450587 chr20:61450582 nonsynonymous SNV 0.979 1 16 hm5C_associated_SNPs_40259 0 0 1 0 2 COL9A3 chr20:61450574 3'AG 61450574 Downstream 9bp
chr20 61450582 61450582 1 + G T UCEC 61450587 + 61450567 61450607 41 TGCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAAC TGCACAGGGACCAAATGGGGCCCCAGGAAAGCCGGGGAAAC < 41bp 1 0.347075885706104 1 0.0726353824138641 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450587 chr20:61450582 nonsynonymous SNV 0.979 1 16 hm5C_associated_SNPs_40259 0 0 1 0 2 COL9A3 chr20:61450645 5'GT 61450645 Upstream 64bp
chr20 61450582 61450582 1 + G T UCEC 61450588 + 61450568 61450608 41 GCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAACC GCACAGGGACCAAATGGGGCCCCAGGAAAGCCGGGGAAACC < 41bp 1 0.184780004599031 1 0.171294838190079 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450588 chr20:61450582 nonsynonymous SNV 0.979 1 15 hm5C_associated_SNPs_40260 0 0 1 0 2 COL9A3 chr20:61450574 3'AG 61450574 Downstream 9bp
chr20 61450582 61450582 1 + G T UCEC 61450588 + 61450568 61450608 41 GCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAACC GCACAGGGACCAAATGGGGCCCCAGGAAAGCCGGGGAAACC < 41bp 1 0.184780004599031 1 0.171294838190079 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450588 chr20:61450582 nonsynonymous SNV 0.979 1 15 hm5C_associated_SNPs_40260 0 0 1 0 2 COL9A3 chr20:61450645 5'GT 61450645 Upstream 64bp
chr19 2810303 2810303 1 + C T UCEC 2810285 + 2810265 2810305 41 GACCTGGGCACTCTGAGGCTCTGCCCCATCCCTGCAGGCGG GACCTGGGCACTCTGAGGCTCTGCCCCATCCCTGCAGGTGG < 41bp 1 0.203173930995712 1 0.513234198093414 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control THOP1 ENSG00000172009 CDS Human protein_coding chr19:2810285 chr19:2810303 nonsynonymous SNV 0.820 0 39 hm5C_associated_SNPs_40261 0 0 1 0 1 THOP1 chr19:2810302 3'AG 2810302 Downstream 2bp
chr19 2810303 2810303 1 + C T UCEC 2810288 + 2810268 2810308 41 CTGGGCACTCTGAGGCTCTGCCCCATCCCTGCAGGCGGAGT CTGGGCACTCTGAGGCTCTGCCCCATCCCTGCAGGTGGAGT < 41bp 1 0.185086842148106 1 0.04825559258461 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THOP1 ENSG00000172009 CDS Human protein_coding chr19:2810288 chr19:2810303 nonsynonymous SNV 0.820 0 36 hm5C_associated_SNPs_40262 0 0 1 0 1 THOP1 chr19:2810302 3'AG 2810302 Downstream 2bp
chr21 46931112 46931112 1 + G A UCEC 46931104 + 46931084 46931124 41 GCCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC GCCCGGGGCACGCATCTTCTCCTTTGACAGCAAGGACGTCC < 41bp 1 0.0521757781867179 1 0.110533714294434 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931104 chr21:46931112 nonsynonymous SNV 0.699 4 29 hm5C_associated_SNPs_40263 0 0 1 0 2 COL18A1 chr21:46931025 3'AG 46931025 Downstream 88bp
chr21 46931112 46931112 1 + G A UCEC 46931104 + 46931084 46931124 41 GCCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC GCCCGGGGCACGCATCTTCTCCTTTGACAGCAAGGACGTCC < 41bp 1 0.0521757781867179 1 0.110533714294434 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931104 chr21:46931112 nonsynonymous SNV 0.699 4 29 hm5C_associated_SNPs_40263 0 0 1 0 2 COL18A1 chr21:46931140 5'GT 46931140 Upstream 29bp
chr21 46931112 46931112 1 + G A UCEC 46931105 + 46931085 46931125 41 CCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT CCCGGGGCACGCATCTTCTCCTTTGACAGCAAGGACGTCCT < 41bp 1 0.0636834779663354 1 0.0525189340114594 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931105 chr21:46931112 nonsynonymous SNV 0.699 4 28 hm5C_associated_SNPs_40264 0 0 1 0 2 COL18A1 chr21:46931025 3'AG 46931025 Downstream 88bp
chr21 46931112 46931112 1 + G A UCEC 46931105 + 46931085 46931125 41 CCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT CCCGGGGCACGCATCTTCTCCTTTGACAGCAAGGACGTCCT < 41bp 1 0.0636834779663354 1 0.0525189340114594 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931105 chr21:46931112 nonsynonymous SNV 0.699 4 28 hm5C_associated_SNPs_40264 0 0 1 0 2 COL18A1 chr21:46931140 5'GT 46931140 Upstream 29bp
chr10 99216584 99216584 1 + A G UCEC 99216603 + 99216583 99216623 41 AATGGAATGAGCTGGGAGCCCCCTCCCTGGGTGACTGCTCA AGTGGAATGAGCTGGGAGCCCCCTCCCTGGGTGACTGCTCA < 41bp 1 0.139090360697519 1 0.111596584320068 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99216603 chr10:99216584 nonsynonymous SNV 0.998 2 2 hm5C_associated_SNPs_40265 0 0 1 0 1 ZDHHC16 chr10:99216534 3'AG 99216534 Downstream 51bp
chr9 131897082 131897082 1 + G A UCEC 131897102 + 131897082 131897122 41 GCAGCCTTCGCTGCTTTCCTCTGCTGTCTCTGCAAGATTGG ACAGCCTTCGCTGCTTTCCTCTGCTGTCTCTGCAAGATTGG < 41bp 1 0.485038319311215 1 0.138103365898132 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPA ENSG00000119383 CDS Human protein_coding chr9:131897102 chr9:131897082 nonsynonymous SNV 0.943 2 1 hm5C_associated_SNPs_40266 0 0 0 0 2 PTPA chr9:131897074 3'AG 131897074 Downstream 9bp
chr9 131897082 131897082 1 + G A UCEC 131897102 + 131897082 131897122 41 GCAGCCTTCGCTGCTTTCCTCTGCTGTCTCTGCAAGATTGG ACAGCCTTCGCTGCTTTCCTCTGCTGTCTCTGCAAGATTGG < 41bp 1 0.485038319311215 1 0.138103365898132 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPA ENSG00000119383 CDS Human protein_coding chr9:131897102 chr9:131897082 nonsynonymous SNV 0.943 2 1 hm5C_associated_SNPs_40266 0 0 0 0 2 PTPA chr9:131897173 5'GT 131897173 Upstream 92bp
chr11 9451353 9451353 1 + C A UCEC 9451359 + 9451339 9451379 41 TGAAGAAGTTACTCCTATTGCAGTAGAAATGACACAACATT TGAAGAAGTTACTCATATTGCAGTAGAAATGACACAACATT < 41bp 1 0.566084709765909 1 0.642471015453339 experiment 0.867830580468181 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9451359 chr11:9451353 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_40267 0 0 1 0 1 IPO7 chr11:9451381 5'GT 9451381 Upstream 29bp
chr3 183860651 183860651 1 + C A UCEC 183860652 + 183860632 183860672 41 CCGGACAGCCGGGGAGGCTCCCCTCAGATGGATGACATCAA CCGGACAGCCGGGGAGGCTACCCTCAGATGGATGACATCAA < 41bp 1 0.132071474476208 1 0.0547309517860413 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183860652 chr3:183860651 nonsynonymous SNV 0.998 4 20 hm5C_associated_SNPs_40269 0 0 1 0 2 EIF2B5 chr3:183860567 3'AG 183860567 Downstream 85bp
chr3 183860651 183860651 1 + C A UCEC 183860652 + 183860632 183860672 41 CCGGACAGCCGGGGAGGCTCCCCTCAGATGGATGACATCAA CCGGACAGCCGGGGAGGCTACCCTCAGATGGATGACATCAA < 41bp 1 0.132071474476208 1 0.0547309517860413 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183860652 chr3:183860651 nonsynonymous SNV 0.998 4 20 hm5C_associated_SNPs_40269 0 0 1 0 2 EIF2B5 chr3:183860674 5'GT 183860674 Upstream 24bp
chr7 99780446 99780446 1 + C T UCEC 99780447 + 99780427 99780467 41 TTCAATGCTGTGAAAGCCGCCAAAAGTGACATGCAGGTAAA TTCAATGCTGTGAAAGCCGTCAAAAGTGACATGCAGGTAAA < 41bp 1 0.558508542679778 1 0.680691957473755 experiment 0.882982914640443 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG3 ENSG00000066923 CDS Human protein_coding chr7:99780447 chr7:99780446 nonsynonymous SNV 0.995 3 20 hm5C_associated_SNPs_40270 0 0 0 0 1 STAG3 chr7:99780462 5'GT 99780462 Upstream 17bp
chrX 69354390 69354390 1 + A G UCEC 69354374 + 69354354 69354394 41 CTCCTTTTTGCTCTTCCAGCCGAAATGAAGATTTGGAAGAG CTCCTTTTTGCTCTTCCAGCCGAAATGAAGATTTGGGAGAG < 41bp 1 0.598755320205694 1 0.859632968902588 experiment 0.802489359588612 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69354374 chrX:69354390 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_40271 0 0 1 0 1 IGBP1 chrX:69354373 3'AG 69354373 Downstream 18bp
chr19 1041936 1041936 1 + G T UCEC 1041928 + 1041908 1041948 41 CCTGCTTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGC CCTGCTTTCCGCAGCTGACACCGGGCGATGAGCCCGGGCGC < 41bp 1 0.607440176873246 1 0.881274461746216 experiment 0.785119646253509 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041928 chr19:1041936 nonsynonymous SNV 0.037 4 29 hm5C_associated_SNPs_40273 0 0 0 0 1 ABCA7 chr19:1041971 5'GT 1041971 Upstream 36bp
chr19 1041936 1041936 1 + G T UCEC 1041929 + 1041909 1041949 41 CTGCTTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGCC CTGCTTTCCGCAGCTGACACCGGGCGATGAGCCCGGGCGCC < 41bp 1 0.412534870860892 1 0.95961993932724 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041929 chr19:1041936 nonsynonymous SNV 0.037 4 28 hm5C_associated_SNPs_40274 0 0 0 0 1 ABCA7 chr19:1041971 5'GT 1041971 Upstream 36bp
chr19 1041936 1041936 1 + G T UCEC 1041933 + 1041913 1041953 41 TTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGCCTGAG TTTCCGCAGCTGACACCGGGCGATGAGCCCGGGCGCCTGAG < 41bp 1 0.170796192989615 1 0.218703329563141 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041933 chr19:1041936 nonsynonymous SNV 0.037 4 24 hm5C_associated_SNPs_40275 0 0 0 0 1 ABCA7 chr19:1041971 5'GT 1041971 Upstream 36bp
chr19 1041936 1041936 1 + G T UCEC 1041940 + 1041920 1041960 41 AGCTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTC AGCTGACACCGGGCGATGAGCCCGGGCGCCTGAGCAACTTC < 41bp 1 0.413570007369051 1 0.482476830482483 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041940 chr19:1041936 nonsynonymous SNV 0.037 4 17 hm5C_associated_SNPs_40276 0 0 0 0 1 ABCA7 chr19:1041971 5'GT 1041971 Upstream 36bp
chr19 1041936 1041936 1 + G T UCEC 1041941 + 1041921 1041961 41 GCTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCA GCTGACACCGGGCGATGAGCCCGGGCGCCTGAGCAACTTCA < 41bp 1 0.363335095301007 1 0.869527816772461 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041941 chr19:1041936 nonsynonymous SNV 0.037 4 16 hm5C_associated_SNPs_40277 0 0 0 0 1 ABCA7 chr19:1041971 5'GT 1041971 Upstream 36bp
chr19 1041936 1041936 1 + G T UCEC 1041942 + 1041922 1041962 41 CTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCAA CTGACACCGGGCGATGAGCCCGGGCGCCTGAGCAACTTCAA < 41bp 1 0.431847168141743 1 0.790971040725708 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041942 chr19:1041936 nonsynonymous SNV 0.037 4 15 hm5C_associated_SNPs_40278 0 0 0 0 1 ABCA7 chr19:1041971 5'GT 1041971 Upstream 36bp
chr11 6591869 6591869 1 + T C UCEC 6591872 + 6591852 6591892 41 AAGGGAGCTGGATGCAATGGCAGAGTGCAAGGCCCAGATGC AAGGGAGCTGGATGCAACGGCAGAGTGCAAGGCCCAGATGC < 41bp 1 0.287457872579578 1 0.754433989524841 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNHD1 ENSG00000179532 CDS Human protein_coding chr11:6591872 chr11:6591869 nonsynonymous SNV 0.955 1 18 hm5C_associated_SNPs_40281 0 0 0 0 2 DNHD1 chr11:6591848 3'AG 6591848 Downstream 22bp
chr11 6591869 6591869 1 + T C UCEC 6591872 + 6591852 6591892 41 AAGGGAGCTGGATGCAATGGCAGAGTGCAAGGCCCAGATGC AAGGGAGCTGGATGCAACGGCAGAGTGCAAGGCCCAGATGC < 41bp 1 0.287457872579578 1 0.754433989524841 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNHD1 ENSG00000179532 CDS Human protein_coding chr11:6591872 chr11:6591869 nonsynonymous SNV 0.955 1 18 hm5C_associated_SNPs_40281 0 0 0 0 2 DNHD1 chr11:6591850 3'AG 6591850 Downstream 20bp
chr21 46900431 46900431 1 + G A UCEC 46900416 + 46900396 46900436 41 GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTGCGGGT GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTACGGGT < 41bp 1 0.035632755321488 1 0.195154398679733 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900416 chr21:46900431 synonymous SNV . 0 36 hm5C_associated_SNPs_40282 0 0 1 0 2 COL18A1 chr21:46900381 3'AG 46900381 Downstream 51bp
chr21 46900431 46900431 1 + G A UCEC 46900416 + 46900396 46900436 41 GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTGCGGGT GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTACGGGT < 41bp 1 0.035632755321488 1 0.195154398679733 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900416 chr21:46900431 synonymous SNV . 0 36 hm5C_associated_SNPs_40282 0 0 1 0 2 COL18A1 chr21:46900434 5'GT 46900434 Upstream 4bp
chr1 20224103 20224103 1 + G T UCEC 20224116 + 20224096 20224136 41 TACGACAGTGTTCGGAGGATCAATGACAACTCAGAGGCACC TACGACATTGTTCGGAGGATCAATGACAACTCAGAGGCACC < 41bp 1 0.243127314685938 1 0.284197211265564 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control OTUD3 ENSG00000169914 CDS Human protein_coding chr1:20224116 chr1:20224103 nonsynonymous SNV 0.991 4 8 hm5C_associated_SNPs_40284 0 0 1 0 2 OTUD3 chr1:20224033 3'AG 20224033 Downstream 71bp
chr1 20224103 20224103 1 + G T UCEC 20224116 + 20224096 20224136 41 TACGACAGTGTTCGGAGGATCAATGACAACTCAGAGGCACC TACGACATTGTTCGGAGGATCAATGACAACTCAGAGGCACC < 41bp 1 0.243127314685938 1 0.284197211265564 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control OTUD3 ENSG00000169914 CDS Human protein_coding chr1:20224116 chr1:20224103 nonsynonymous SNV 0.991 4 8 hm5C_associated_SNPs_40284 0 0 1 0 2 OTUD3 chr1:20224155 5'GT 20224155 Upstream 53bp
chr1 41215334 41215334 1 + A G UCEC 41215344 + 41215324 41215364 41 TTCACACAGAAGATAACAAGCGCCGGACTCTACAGGTATTA TTCACACAGAGGATAACAAGCGCCGGACTCTACAGGTATTA < 41bp 1 0.645180328316844 1 0.524725914001465 experiment 0.709639343366311 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NFYC ENSG00000066136 CDS Human protein_coding chr1:41215344 chr1:41215334 synonymous SNV . 0 11 hm5C_associated_SNPs_40286 0 0 1 0 2 NFYC chr1:41215245 3'AG 41215245 Downstream 90bp
chr1 41215334 41215334 1 + A G UCEC 41215344 + 41215324 41215364 41 TTCACACAGAAGATAACAAGCGCCGGACTCTACAGGTATTA TTCACACAGAGGATAACAAGCGCCGGACTCTACAGGTATTA < 41bp 1 0.645180328316844 1 0.524725914001465 experiment 0.709639343366311 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NFYC ENSG00000066136 CDS Human protein_coding chr1:41215344 chr1:41215334 synonymous SNV . 0 11 hm5C_associated_SNPs_40286 0 0 1 0 2 NFYC chr1:41215358 5'GT 41215358 Upstream 25bp
chr21 45736366 45736366 1 + G A UCEC 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACATGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA < 41bp 1 0.388697325797164 1 0.234776675701141 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736366 nonsynonymous SNV 0.662 4 5 hm5C_associated_SNPs_40287 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 52bp
chr21 45736366 45736366 1 + G A UCEC 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACATGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA < 41bp 1 0.388697325797164 1 0.234776675701141 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736366 nonsynonymous SNV 0.662 4 5 hm5C_associated_SNPs_40287 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 42bp
chr21 45736366 45736366 1 + G A UCEC 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACATGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC < 41bp 1 0.0837831022520772 1 0.0993862152099609 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736366 nonsynonymous SNV 0.662 4 3 hm5C_associated_SNPs_40288 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 52bp
chr21 45736366 45736366 1 + G A UCEC 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACATGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC < 41bp 1 0.0837831022520772 1 0.0993862152099609 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736366 nonsynonymous SNV 0.662 4 3 hm5C_associated_SNPs_40288 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 42bp
chr21 45736366 45736366 1 + G A UCEC 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CATGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC < 41bp 1 0.0737244474751506 1 0.0793107748031616 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736366 nonsynonymous SNV 0.662 4 2 hm5C_associated_SNPs_40289 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 52bp
chr21 45736366 45736366 1 + G A UCEC 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CATGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC < 41bp 1 0.0737244474751506 1 0.0793107748031616 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736366 nonsynonymous SNV 0.662 4 2 hm5C_associated_SNPs_40289 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 42bp
chr21 45736366 45736366 1 + G A UCEC 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT ATGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT < 41bp 1 0.354993313327899 1 0.373308569192886 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736366 nonsynonymous SNV 0.662 4 1 hm5C_associated_SNPs_40290 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 52bp
chr21 45736366 45736366 1 + G A UCEC 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT ATGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT < 41bp 1 0.354993313327899 1 0.373308569192886 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736366 nonsynonymous SNV 0.662 4 1 hm5C_associated_SNPs_40290 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 42bp
chr11 64033415 64033415 1 + T C UCEC 64033434 + 64033414 64033454 41 ATCAGGAGTTCCAGAACAGACAGGTGCAGAGCCTGCTGGAG ACCAGGAGTTCCAGAACAGACAGGTGCAGAGCCTGCTGGAG < 41bp 1 0.661398864362401 1 0.832162141799927 experiment 0.677202271275197 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64033434 chr11:64033415 synonymous SNV . 0 2 hm5C_associated_SNPs_40291 0 0 1 0 2 PLCB3 chr11:64033358 3'AG 64033358 Downstream 58bp
chr11 64033415 64033415 1 + T C UCEC 64033434 + 64033414 64033454 41 ATCAGGAGTTCCAGAACAGACAGGTGCAGAGCCTGCTGGAG ACCAGGAGTTCCAGAACAGACAGGTGCAGAGCCTGCTGGAG < 41bp 1 0.661398864362401 1 0.832162141799927 experiment 0.677202271275197 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64033434 chr11:64033415 synonymous SNV . 0 2 hm5C_associated_SNPs_40291 0 0 1 0 2 PLCB3 chr11:64033511 5'GT 64033511 Upstream 97bp
chr12 56531997 56531997 1 + C T UCEC 56531999 + 56531979 56532019 41 GAGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCG GAGGATGTCCCATCTGGCTGCCTGCACTTGCGCCTGGAGCG < 41bp 1 0.0534856748086668 1 0.35758364200592 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56531999 chr12:56531997 nonsynonymous SNV 0.998 2 19 hm5C_associated_SNPs_40292 0 0 1 0 2 ESYT1 chr12:56531967 3'AG 56531967 Downstream 31bp
chr12 56531997 56531997 1 + C T UCEC 56531999 + 56531979 56532019 41 GAGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCG GAGGATGTCCCATCTGGCTGCCTGCACTTGCGCCTGGAGCG < 41bp 1 0.0534856748086668 1 0.35758364200592 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56531999 chr12:56531997 nonsynonymous SNV 0.998 2 19 hm5C_associated_SNPs_40292 0 0 1 0 2 ESYT1 chr12:56532056 5'GT 56532056 Upstream 60bp
chr12 56531997 56531997 1 + C T UCEC 56532000 + 56531980 56532020 41 AGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCGT AGGATGTCCCATCTGGCTGCCTGCACTTGCGCCTGGAGCGT < 41bp 1 0.641438608042177 1 0.643640995025635 experiment 0.717122783915646 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532000 chr12:56531997 nonsynonymous SNV 0.998 2 18 hm5C_associated_SNPs_40293 0 0 1 0 2 ESYT1 chr12:56531967 3'AG 56531967 Downstream 31bp
chr12 56531997 56531997 1 + C T UCEC 56532000 + 56531980 56532020 41 AGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCGT AGGATGTCCCATCTGGCTGCCTGCACTTGCGCCTGGAGCGT < 41bp 1 0.641438608042177 1 0.643640995025635 experiment 0.717122783915646 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532000 chr12:56531997 nonsynonymous SNV 0.998 2 18 hm5C_associated_SNPs_40293 0 0 1 0 2 ESYT1 chr12:56532056 5'GT 56532056 Upstream 60bp
chr22 24204367 24204367 1 + C A UCEC 24204381 + 24204361 24204401 41 ACCTCTCTATCATCAATGCCCCGACCTTGGTATGTATCCTC ACCTCTATATCATCAATGCCCCGACCTTGGTATGTATCCTC < 41bp 1 0.09344841978039 1 0.0547647178173065 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24204381 chr22:24204367 nonsynonymous SNV 0.993 3 7 hm5C_associated_SNPs_40295 0 0 1 0 2 SLC2A11 chr22:24204291 3'AG 24204291 Downstream 77bp
chr22 24204367 24204367 1 + C A UCEC 24204381 + 24204361 24204401 41 ACCTCTCTATCATCAATGCCCCGACCTTGGTATGTATCCTC ACCTCTATATCATCAATGCCCCGACCTTGGTATGTATCCTC < 41bp 1 0.09344841978039 1 0.0547647178173065 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460 CDS Human other chr22:24204381 chr22:24204367 nonsynonymous SNV 0.993 3 7 hm5C_associated_SNPs_40295 0 0 1 0 2 SLC2A11 chr22:24204389 5'GT 24204389 Upstream 23bp
chr22 24204367 24204367 1 + C A UCEC 24204382 + 24204362 24204402 41 CCTCTCTATCATCAATGCCCCGACCTTGGTATGTATCCTCT CCTCTATATCATCAATGCCCCGACCTTGGTATGTATCCTCT < 41bp 1 0.159949257247817 1 0.334225416183472 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24204382 chr22:24204367 nonsynonymous SNV 0.993 3 6 hm5C_associated_SNPs_40296 0 0 1 0 2 SLC2A11 chr22:24204291 3'AG 24204291 Downstream 77bp
chr22 24204367 24204367 1 + C A UCEC 24204382 + 24204362 24204402 41 CCTCTCTATCATCAATGCCCCGACCTTGGTATGTATCCTCT CCTCTATATCATCAATGCCCCGACCTTGGTATGTATCCTCT < 41bp 1 0.159949257247817 1 0.334225416183472 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460 CDS Human other chr22:24204382 chr22:24204367 nonsynonymous SNV 0.993 3 6 hm5C_associated_SNPs_40296 0 0 1 0 2 SLC2A11 chr22:24204389 5'GT 24204389 Upstream 23bp
chr22 24204367 24204367 1 + C A UCEC 24204386 + 24204366 24204406 41 TCTATCATCAATGCCCCGACCTTGGTATGTATCCTCTCTGG TATATCATCAATGCCCCGACCTTGGTATGTATCCTCTCTGG < 41bp 1 0.451345587816014 1 0.0657042562961578 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24204386 chr22:24204367 nonsynonymous SNV 0.993 3 2 hm5C_associated_SNPs_40297 0 0 1 0 2 SLC2A11 chr22:24204291 3'AG 24204291 Downstream 77bp
chr22 24204367 24204367 1 + C A UCEC 24204386 + 24204366 24204406 41 TCTATCATCAATGCCCCGACCTTGGTATGTATCCTCTCTGG TATATCATCAATGCCCCGACCTTGGTATGTATCCTCTCTGG < 41bp 1 0.451345587816014 1 0.0657042562961578 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460 CDS Human other chr22:24204386 chr22:24204367 nonsynonymous SNV 0.993 3 2 hm5C_associated_SNPs_40297 0 0 1 0 2 SLC2A11 chr22:24204389 5'GT 24204389 Upstream 23bp
chr19 41106010 41106010 1 + G C UCEC 41106028 + 41106008 41106048 41 CGGCCCCGGGGGCCAGGGGGCCGGGGACTACTGAGAAGGAG CGCCCCCGGGGGCCAGGGGGCCGGGGACTACTGAGAAGGAG < 41bp 1 0.579024288397921 1 0.766197443008423 experiment 0.841951423204157 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41106028 chr19:41106010 synonymous SNV . 0 3 hm5C_associated_SNPs_40298 0 0 0 0 2 LTBP4 chr19:41105974 3'AG 41105974 Downstream 37bp
chr19 41106010 41106010 1 + G C UCEC 41106028 + 41106008 41106048 41 CGGCCCCGGGGGCCAGGGGGCCGGGGACTACTGAGAAGGAG CGCCCCCGGGGGCCAGGGGGCCGGGGACTACTGAGAAGGAG < 41bp 1 0.579024288397921 1 0.766197443008423 experiment 0.841951423204157 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41106028 chr19:41106010 synonymous SNV . 0 3 hm5C_associated_SNPs_40298 0 0 0 0 2 LTBP4 chr19:41106083 5'GT 41106083 Upstream 74bp
chr19 41106010 41106010 1 + G C UCEC 41106029 + 41106009 41106049 41 GGCCCCGGGGGCCAGGGGGCCGGGGACTACTGAGAAGGAGG GCCCCCGGGGGCCAGGGGGCCGGGGACTACTGAGAAGGAGG < 41bp 1 0.73554238358322 1 0.819082498550415 experiment 0.52891523283356 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41106029 chr19:41106010 synonymous SNV . 0 2 hm5C_associated_SNPs_40299 0 0 0 0 2 LTBP4 chr19:41105974 3'AG 41105974 Downstream 37bp
chr19 41106010 41106010 1 + G C UCEC 41106029 + 41106009 41106049 41 GGCCCCGGGGGCCAGGGGGCCGGGGACTACTGAGAAGGAGG GCCCCCGGGGGCCAGGGGGCCGGGGACTACTGAGAAGGAGG < 41bp 1 0.73554238358322 1 0.819082498550415 experiment 0.52891523283356 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41106029 chr19:41106010 synonymous SNV . 0 2 hm5C_associated_SNPs_40299 0 0 0 0 2 LTBP4 chr19:41106083 5'GT 41106083 Upstream 74bp
chr17 3563921 3563921 1 + G T UCEC 3563941 + 3563921 3563961 41 GCGCGCACAGGCTCTGGCAGCCGTCTCAGGCAGGACTGGGC TCGCGCACAGGCTCTGGCAGCCGTCTCAGGCAGGACTGGGC < 41bp 1 0.0883610430433398 1 0.0978665351867676 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CTNS ENSG00000040531 CDS Human protein_coding chr17:3563941 chr17:3563921 nonsynonymous SNV 0.449 2 1 hm5C_associated_SNPs_40300 0 0 0 0 1 CTNS chr17:3563911 3'AG 3563911 Downstream 11bp
chr17 16329464 16329464 1 + C T UCEC 16329457 + 16329437 16329477 41 GAGTTTTCAGGACTGAGCCACCTTTCCCGAAAGTTCACCGA GAGTTTTCAGGACTGAGCCACCTTTCCTGAAAGTTCACCGA < 41bp 1 0.00853765138118128 1 0.0666192770004272 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16329457 chr17:16329464 stopgain 0.981 1 28 hm5C_associated_SNPs_40303 0 0 0 0 1 TRPV2 chr17:16329413 3'AG 16329413 Downstream 52bp
chr1 43893249 43893249 1 + T A UCEC 43893251 + 43893231 43893271 41 CACCATTCCGTCGAGACTTACAGGCTTACGCTGGGCGTCAG CACCATTCCGTCGAGACTAACAGGCTTACGCTGGGCGTCAG < 41bp 1 0.326197916599196 1 0.898139357566833 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43893251 chr1:43893249 stopgain 0.974 0 19 hm5C_associated_SNPs_40306 0 0 1 0 1 SZT2 chr1:43893201 3'AG 43893201 Downstream 49bp
chr1 154947242 154947242 1 + C T UCEC 154947230 + 154947210 154947250 41 AACCGAGCGATCATGTCGCACAAACAAATTTACTATTCGGA AACCGAGCGATCATGTCGCACAAACAAATTTATTATTCGGA < 41bp 1 0.0861590633341113 1 0.158831715583801 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CKS1B ENSG00000173207 CDS Human protein_coding chr1:154947230 chr1:154947242 synonymous SNV . 0 33 hm5C_associated_SNPs_40307 0 0 1 0 1 CKS1B chr1:154947280 5'GT 154947280 Upstream 39bp
chr7 56129502 56129502 1 + T A UCEC 56129510 + 56129490 56129530 41 TCAAGCAGAACATTCAGAATCAGGTCAGCTTGTGGGTGTGG TCAAGCAGAACAATCAGAATCAGGTCAGCTTGTGGGTGTGG < 41bp 1 0.576086153956985 1 0.389569699764252 experiment 0.84782769208603 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCT6A ENSG00000146731 CDS Human protein_coding chr7:56129510 chr7:56129502 nonsynonymous SNV 0.999 0 13 hm5C_associated_SNPs_40308 0 0 1 0 2 CCT6A chr7:56129440 3'AG 56129440 Downstream 63bp
chr7 56129502 56129502 1 + T A UCEC 56129510 + 56129490 56129530 41 TCAAGCAGAACATTCAGAATCAGGTCAGCTTGTGGGTGTGG TCAAGCAGAACAATCAGAATCAGGTCAGCTTGTGGGTGTGG < 41bp 1 0.576086153956985 1 0.389569699764252 experiment 0.84782769208603 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCT6A ENSG00000146731 CDS Human protein_coding chr7:56129510 chr7:56129502 nonsynonymous SNV 0.999 0 13 hm5C_associated_SNPs_40308 0 0 1 0 2 CCT6A chr7:56129542 5'GT 56129542 Upstream 41bp
chr1 70883646 70883646 1 + G A UCEC 70883650 + 70883630 70883670 41 TGCTTCAGGTTTAGCAGCCACTGTAACTATTACCCATCTTT TGCTTCAGGTTTAGCAACCACTGTAACTATTACCCATCTTT < 41bp 1 0.429426975785173 1 0.237915933132172 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTH ENSG00000116761 CDS Human protein_coding chr1:70883650 chr1:70883646 nonsynonymous SNV 0.802 4 17 hm5C_associated_SNPs_40311 0 0 1 1 2 CTH chr1:70883620 3'AG 70883620 Downstream 27bp
chr1 70883646 70883646 1 + G A UCEC 70883650 + 70883630 70883670 41 TGCTTCAGGTTTAGCAGCCACTGTAACTATTACCCATCTTT TGCTTCAGGTTTAGCAACCACTGTAACTATTACCCATCTTT < 41bp 1 0.429426975785173 1 0.237915933132172 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTH ENSG00000116761 CDS Human protein_coding chr1:70883650 chr1:70883646 nonsynonymous SNV 0.802 4 17 hm5C_associated_SNPs_40311 0 0 1 1 2 CTH chr1:70883715 5'GT 70883715 Upstream 70bp
chr1 171519298 171519298 1 + T C UCEC 171519315 + 171519295 171519335 41 TGGTTTTACTGAAGTGGTATCCAAAAAACAACAAAAACGTT TGGCTTTACTGAAGTGGTATCCAAAAAACAACAAAAACGTT < 41bp 1 0.0854618255166637 1 0.727924108505249 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171519315 chr1:171519298 synonymous SNV . 0 4 hm5C_associated_SNPs_40312 0 0 1 0 2 PRRC2C chr1:171519225 3'AG 171519225 Downstream 74bp
chr1 171519298 171519298 1 + T C UCEC 171519315 + 171519295 171519335 41 TGGTTTTACTGAAGTGGTATCCAAAAAACAACAAAAACGTT TGGCTTTACTGAAGTGGTATCCAAAAAACAACAAAAACGTT < 41bp 1 0.0854618255166637 1 0.727924108505249 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171519315 chr1:171519298 synonymous SNV . 0 4 hm5C_associated_SNPs_40312 0 0 1 0 2 PRRC2C chr1:171519379 5'GT 171519379 Upstream 82bp
chr11 61252164 61252164 1 + G A UCEC 61252163 + 61252143 61252183 41 GCCCTTCTTCCTCCCAGGTCCGGAAGGTCCATTTCGACACC GCCCTTCTTCCTCCCAGGTCCAGAAGGTCCATTTCGACACC < 41bp 1 0.758107379649695 1 0.539874494075775 experiment 0.483785240700609 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61252163 chr11:61252164 nonsynonymous SNV 0.968 0 22 hm5C_associated_SNPs_40313 0 0 0 0 1 PPP1R32 chr11:61252160 3'AG 61252160 Downstream 5bp
chr11 61252164 61252164 1 + G A UCEC 61252171 + 61252151 61252191 41 TCCTCCCAGGTCCGGAAGGTCCATTTCGACACCCAGGAGCA TCCTCCCAGGTCCAGAAGGTCCATTTCGACACCCAGGAGCA < 41bp 1 0.0826447054136452 1 0.02166348695755 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61252171 chr11:61252164 nonsynonymous SNV 0.968 0 14 hm5C_associated_SNPs_40314 0 0 0 0 1 PPP1R32 chr11:61252160 3'AG 61252160 Downstream 5bp
chr16 57171156 57171156 1 + C T UCEC 57171175 + 57171155 57171195 41 CCGGTTTGCGGCCCAGGCCACACAACAGCGGACGGCCACGG CTGGTTTGCGGCCCAGGCCACACAACAGCGGACGGCCACGG < 41bp 1 0.611750001214272 1 0.341713309288025 experiment 0.776499997571457 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57171175 chr16:57171156 nonsynonymous SNV 0.998 4 2 hm5C_associated_SNPs_40315 0 0 1 0 2 CPNE2 chr16:57171061 3'AG 57171061 Downstream 96bp
chr16 57171156 57171156 1 + C T UCEC 57171175 + 57171155 57171195 41 CCGGTTTGCGGCCCAGGCCACACAACAGCGGACGGCCACGG CTGGTTTGCGGCCCAGGCCACACAACAGCGGACGGCCACGG < 41bp 1 0.611750001214272 1 0.341713309288025 experiment 0.776499997571457 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57171175 chr16:57171156 nonsynonymous SNV 0.998 4 2 hm5C_associated_SNPs_40315 0 0 1 0 2 CPNE2 chr16:57171194 5'GT 57171194 Upstream 39bp
chr22 45579383 45579383 1 + C T UCEC 45579387 + 45579367 45579407 41 GACACAGCTTTTGGTGCGGGCAGACACCAATTTAGGTGGGT GACACAGCTTTTGGTGTGGGCAGACACCAATTTAGGTGGGT < 41bp 1 0.142146113119508 1 0.465346187353134 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NUP50 ENSG00000093000 CDS Human protein_coding chr22:45579387 chr22:45579383 nonsynonymous SNV 0.997 4 17 hm5C_associated_SNPs_40318 0 0 1 0 1 NUP50 chr22:45579401 5'GT 45579401 Upstream 19bp
chr3 47046792 47046792 1 + G A UCEC 47046776 + 47046756 47046796 41 TACCTCATCCGCGTGGAGCCCTTCACCTCCCTGCACGTCCA TACCTCATCCGCGTGGAGCCCTTCACCTCCCTGCACATCCA < 41bp 1 0.229059075011673 1 0.311226785182953 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47046776 chr3:47046792 nonsynonymous SNV 0.982 0 37 hm5C_associated_SNPs_40321 0 0 1 0 1 NBEAL2 chr3:47046811 5'GT 47046811 Upstream 20bp
chr7 73604160 73604160 1 + C T UCEC 73604152 + 73604132 73604172 41 TATTTTCCCTTTATCATTAGCTGTTGGGCGATCGGTCACTT TATTTTCCCTTTATCATTAGCTGTTGGGTGATCGGTCACTT < 41bp 1 0.2065848394094 1 0.00834459066390991 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4H ENSG00000106682 CDS Human protein_coding chr7:73604152 chr7:73604160 synonymous SNV . 0 29 hm5C_associated_SNPs_40322 0 0 1 0 2 EIF4H chr7:73604152 3'AG 73604152 Downstream 9bp
chr7 73604160 73604160 1 + C T UCEC 73604152 + 73604132 73604172 41 TATTTTCCCTTTATCATTAGCTGTTGGGCGATCGGTCACTT TATTTTCCCTTTATCATTAGCTGTTGGGTGATCGGTCACTT < 41bp 1 0.2065848394094 1 0.00834459066390991 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4H ENSG00000106682 CDS Human protein_coding chr7:73604152 chr7:73604160 synonymous SNV . 0 29 hm5C_associated_SNPs_40322 0 0 1 0 2 EIF4H chr7:73604248 5'GT 73604248 Upstream 89bp
chr6 31928234 31928234 1 + C T UCEC 31928230 + 31928210 31928250 41 TCTTGCTGGAGAACACAAATCTCTCGGCTACAACCTCCTTG TCTTGCTGGAGAACACAAATCTCTTGGCTACAACCTCCTTG < 41bp 1 0.428856158752174 1 0.130678206682205 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31928230 chr6:31928234 nonsynonymous SNV 0.790 3 25 hm5C_associated_SNPs_40323 0 0 0 0 2 SKIV2L chr6:31928209 3'AG 31928209 Downstream 26bp
chr6 31928234 31928234 1 + C T UCEC 31928230 + 31928210 31928250 41 TCTTGCTGGAGAACACAAATCTCTCGGCTACAACCTCCTTG TCTTGCTGGAGAACACAAATCTCTTGGCTACAACCTCCTTG < 41bp 1 0.428856158752174 1 0.130678206682205 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31928230 chr6:31928234 nonsynonymous SNV 0.790 3 25 hm5C_associated_SNPs_40323 0 0 0 0 2 SKIV2L chr6:31928323 5'GT 31928323 Upstream 90bp
chr1 151374065 151374065 1 + A G UCEC 151374064 + 151374044 151374084 41 AGGTGTTGAAATAGAGGGACCATTGTCTACAGAGACCAACT AGGTGTTGAAATAGAGGGACCGTTGTCTACAGAGACCAACT < 41bp 1 0.137155660804335 1 0.102102071046829 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMB4 ENSG00000159377 CDS Human protein_coding chr1:151374064 chr1:151374065 synonymous SNV . 0 22 hm5C_associated_SNPs_40324 0 0 1 0 2 PSMB4 chr1:151374018 3'AG 151374018 Downstream 48bp
chr1 151374065 151374065 1 + A G UCEC 151374064 + 151374044 151374084 41 AGGTGTTGAAATAGAGGGACCATTGTCTACAGAGACCAACT AGGTGTTGAAATAGAGGGACCGTTGTCTACAGAGACCAACT < 41bp 1 0.137155660804335 1 0.102102071046829 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMB4 ENSG00000159377 CDS Human protein_coding chr1:151374064 chr1:151374065 synonymous SNV . 0 22 hm5C_associated_SNPs_40324 0 0 1 0 2 PSMB4 chr1:151374106 5'GT 151374106 Upstream 42bp
chr11 111575824 111575824 1 + G C UCEC 111575822 + 111575802 111575842 41 AGCAGAGACTTGATGGCCGCCAGCGTCGGCCTAGCACCATT AGCAGAGACTTGATGGCCGCCACCGTCGGCCTAGCACCATT < 41bp 1 0.53334398020491 1 0.552811622619629 experiment 0.93331203959018 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control SIK2 ENSG00000170145 CDS Human protein_coding chr11:111575822 chr11:111575824 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_40327 0 0 0 0 1 SIK2 chr11:111575863 5'GT 111575863 Upstream 40bp
chr15 22955253 22955253 1 + C T UCEC 22955235 + 22955215 22955255 41 AAGGACCCCAAGAGCGGCTTCGACATAAAAGTACCACGCCG AAGGACCCCAAGAGCGGCTTCGACATAAAAGTACCACGTCG < 41bp 1 0.7576035615113 1 0.608900725841522 experiment 0.484792876977399 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22955235 chr15:22955253 synonymous SNV . 0 39 hm5C_associated_SNPs_40328 0 0 1 0 1 CYFIP1 chr15:22955280 5'GT 22955280 Upstream 28bp
chr9 138662880 138662880 1 + G A UCEC 138662890 + 138662870 138662910 41 GGGCCTTCTCGGGGCAGGGGCTGCACGAGGGTCCGGCCCGC GGGCCTTCTCAGGGCAGGGGCTGCACGAGGGTCCGGCCCGC < 41bp 1 0.700541800324447 1 0.440715670585632 experiment 0.598916399351105 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control KCNT1 ENSG00000107147 CDS Human protein_coding chr9:138662890 chr9:138662880 synonymous SNV . 0 11 hm5C_associated_SNPs_40329 0 0 0 0 1 KCNT1 chr9:138662941 5'GT 138662941 Upstream 62bp
chr16 2806558 2806558 1 + C T UCEC 2806567 + 2806547 2806587 41 AGCGCAAGCGGCGCGTCGAGCTGCGATGCCTCGAGCTGGAG AGCGCAAGCGGTGCGTCGAGCTGCGATGCCTCGAGCTGGAG < 41bp 1 0.590478686780193 1 0.18827360868454 experiment 0.819042626439614 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2806567 chr16:2806558 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_40331 0 0 1 0 1 SRRM2 chr16:2806607 5'GT 2806607 Upstream 50bp
chr16 2806558 2806558 1 + C T UCEC 2806570 + 2806550 2806590 41 GCAAGCGGCGCGTCGAGCTGCGATGCCTCGAGCTGGAGGAG GCAAGCGGTGCGTCGAGCTGCGATGCCTCGAGCTGGAGGAG < 41bp 1 0.219474062559622 1 0.252280622720718 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2806570 chr16:2806558 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_40332 0 0 1 0 1 SRRM2 chr16:2806607 5'GT 2806607 Upstream 50bp
chr5 153709262 153709262 1 + G A UCEC 153709248 + 153709228 153709268 41 CAGTGTGCTCAATCGCTCGCCTCCAGAGCTGGTCGCCGAGA CAGTGTGCTCAATCGCTCGCCTCCAGAGCTGGTCACCGAGA < 41bp 1 0.616441170321862 1 0.937903046607971 experiment 0.767117659356277 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153709248 chr5:153709262 nonsynonymous SNV 0.798 1 35 hm5C_associated_SNPs_40333 0 0 0 0 1 GALNT10 chr5:153709298 5'GT 153709298 Upstream 37bp
chr16 67316195 67316195 1 + G A UCEC 67316185 + 67316165 67316205 41 GGCTGGCATGGCTACAATGCCAGGGGGGCCGGGAGCTGACA GGCTGGCATGGCTACAATGCCAGGGGGGCCAGGAGCTGACA < 41bp 1 0.783786762393409 1 0.935434103012085 experiment 0.432426475213182 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67316185 chr16:67316195 nonsynonymous SNV 0.232 0 31 hm5C_associated_SNPs_40334 0 0 1 0 2 PLEKHG4 chr16:67316104 3'AG 67316104 Downstream 92bp
chr16 67316195 67316195 1 + G A UCEC 67316185 + 67316165 67316205 41 GGCTGGCATGGCTACAATGCCAGGGGGGCCGGGAGCTGACA GGCTGGCATGGCTACAATGCCAGGGGGGCCAGGAGCTGACA < 41bp 1 0.783786762393409 1 0.935434103012085 experiment 0.432426475213182 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67316185 chr16:67316195 nonsynonymous SNV 0.232 0 31 hm5C_associated_SNPs_40334 0 0 1 0 2 PLEKHG4 chr16:67316252 5'GT 67316252 Upstream 58bp
chr15 74325022 74325022 1 + A T UCEC 74325006 + 74324986 74325026 41 TACAGTCAGTGCCCGGGGCACACCCCGTGCCAGTGTACGCC TACAGTCAGTGCCCGGGGCACACCCCGTGCCAGTGTTCGCC < 41bp 1 0.30794270951333 1 0.0548006296157837 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74325006 chr15:74325022 nonsynonymous SNV 0.001 0 37 hm5C_associated_SNPs_40335 0 0 1 0 2 PML chr15:74324968 3'AG 74324968 Downstream 55bp
chr15 74325022 74325022 1 + A T UCEC 74325006 + 74324986 74325026 41 TACAGTCAGTGCCCGGGGCACACCCCGTGCCAGTGTACGCC TACAGTCAGTGCCCGGGGCACACCCCGTGCCAGTGTTCGCC < 41bp 1 0.30794270951333 1 0.0548006296157837 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74325006 chr15:74325022 nonsynonymous SNV 0.001 0 37 hm5C_associated_SNPs_40335 0 0 1 0 2 PML chr15:74325056 5'GT 74325056 Upstream 35bp
chr2 128867290 128867290 1 + T C UCEC 128867287 + 128867267 128867307 41 GAAGACTTGTGAATCTGATACCCTTGAGGCTCTTCTACTGA GAAGACTTGTGAATCTGATACCCCTGAGGCTCTTCTACTGA < 41bp 1 0.093310515274827 1 0.0823681652545929 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128867287 chr2:128867290 nonsynonymous SNV 0.038 4 24 hm5C_associated_SNPs_40336 0 0 1 0 2 UGGT1 chr2:128867208 3'AG 128867208 Downstream 83bp
chr2 128867290 128867290 1 + T C UCEC 128867287 + 128867267 128867307 41 GAAGACTTGTGAATCTGATACCCTTGAGGCTCTTCTACTGA GAAGACTTGTGAATCTGATACCCCTGAGGCTCTTCTACTGA < 41bp 1 0.093310515274827 1 0.0823681652545929 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128867287 chr2:128867290 nonsynonymous SNV 0.038 4 24 hm5C_associated_SNPs_40336 0 0 1 0 2 UGGT1 chr2:128867320 5'GT 128867320 Upstream 31bp
chr19 38633324 38633324 1 + C T UCEC 38633337 + 38633317 38633357 41 CCACCTACGTGAGATACAAGCCATCCCCAGAAAGGTCAGCC CCACCTATGTGAGATACAAGCCATCCCCAGAAAGGTCAGCC < 41bp 1 0.0120128098771262 1 0.127044051885605 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38633337 chr19:38633324 synonymous SNV . 0 8 hm5C_associated_SNPs_40337 0 0 0 0 1 SIPA1L3 chr19:38633350 5'GT 38633350 Upstream 27bp
chr2 219679347 219679347 1 + G A UCEC 219679360 + 219679340 219679380 41 CCCCACCGCTGGCTGAGAAACAGCCAGCCTGCTACCCCCAG CCCCACCACTGGCTGAGAAACAGCCAGCCTGCTACCCCCAG < 41bp 1 0.459297450464685 1 0.214713901281357 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219679360 chr2:219679347 nonsynonymous SNV 0.637 5 8 hm5C_associated_SNPs_40338 1 0 1 0 1 CYP27A1 chr2:219679268 3'AG 219679268 Downstream 80bp
chr1 9776649 9776649 1 + A G UCEC 9776665 + 9776645 9776685 41 CTGTATGGCAGCTACCCGCTCTGCCAGTTCCAGGTGAGGCC CTGTGTGGCAGCTACCCGCTCTGCCAGTTCCAGGTGAGGCC < 41bp 1 0.349785227691861 1 0.136106789112091 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9776665 chr1:9776649 nonsynonymous SNV 0.777 1 5 hm5C_associated_SNPs_40339 0 0 0 0 1 PIK3CD chr1:9776677 5'GT 9776677 Upstream 29bp
chr14 74424915 74424915 1 + G A UCEC 74424923 + 74424903 74424943 41 CCATTTCCTATGGCCGACTCCAGCCCTTGGGTTCATATTAC CCATTTCCTATGACCGACTCCAGCCCTTGGGTTCATATTAC < 41bp 1 0.321542626452107 1 0.106587618589401 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ6 ENSG00000119723 CDS Human protein_coding chr14:74424923 chr14:74424915 nonsynonymous SNV 0.980 0 13 hm5C_associated_SNPs_40340 0 0 1 0 2 COQ6 chr14:74424850 3'AG 74424850 Downstream 66bp
chr14 74424915 74424915 1 + G A UCEC 74424923 + 74424903 74424943 41 CCATTTCCTATGGCCGACTCCAGCCCTTGGGTTCATATTAC CCATTTCCTATGACCGACTCCAGCCCTTGGGTTCATATTAC < 41bp 1 0.321542626452107 1 0.106587618589401 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ6 ENSG00000119723 CDS Human protein_coding chr14:74424923 chr14:74424915 nonsynonymous SNV 0.980 0 13 hm5C_associated_SNPs_40340 0 0 1 0 2 COQ6 chr14:74424980 5'GT 74424980 Upstream 66bp
chr17 4905844 4905844 1 + C T UCEC 4905833 + 4905813 4905853 41 AGTCGGGGTTCTCTGCGGGTCCGGGAGCACCCCATCCTGGG AGTCGGGGTTCTCTGCGGGTCCGGGAGCACCTCATCCTGGG < 41bp 1 0.557399178575618 1 0.684067249298096 experiment 0.885201642848764 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905833 chr17:4905844 nonsynonymous SNV 0.997 3 32 hm5C_associated_SNPs_40341 0 0 1 0 2 KIF1C chr17:4905759 3'AG 4905759 Downstream 86bp
chr17 4905844 4905844 1 + C T UCEC 4905833 + 4905813 4905853 41 AGTCGGGGTTCTCTGCGGGTCCGGGAGCACCCCATCCTGGG AGTCGGGGTTCTCTGCGGGTCCGGGAGCACCTCATCCTGGG < 41bp 1 0.557399178575618 1 0.684067249298096 experiment 0.885201642848764 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905833 chr17:4905844 nonsynonymous SNV 0.997 3 32 hm5C_associated_SNPs_40341 0 0 1 0 2 KIF1C chr17:4905937 5'GT 4905937 Upstream 94bp
chr16 310004 310004 1 + C T UCEC 309995 + 309975 310015 41 CTCTCCCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG CTCTCCCTGCACCTTTGCAGCTGCTGTGTTGGGGGCCAACG < 41bp 1 0.520943454345205 1 0.052081823348999 experiment 0.958113091309589 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:309995 chr16:310004 nonsynonymous SNV 0.023 3 30 hm5C_associated_SNPs_40343 0 0 1 0 1 FAM234A chr16:309968 3'AG 309968 Downstream 37bp
chr18 34349265 34349265 1 + G A UCEC 34349255 + 34349235 34349275 41 TAGTTCCTGGACTATGGGAACTGATGACTCGCCCAATGTCA TAGTTCCTGGACTATGGGAACTGATGACTCACCCAATGTCA < 41bp 1 0.148224857131059 1 0.106146484613419 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34349255 chr18:34349265 synonymous SNV . 0 31 hm5C_associated_SNPs_40344 0 0 0 0 1 FHOD3 chr18:34349228 3'AG 34349228 Downstream 38bp
chr10 24817003 24817003 1 + C T UCEC 24816988 + 24816968 24817008 41 CAATACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTG CAATACCAAATCTGGAGATGCCGCCAGCCACAGGCTCACTG < 41bp 1 0.126767731673633 1 0.0903530716896057 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816988 chr10:24817003 nonsynonymous SNV 0.002 1 36 hm5C_associated_SNPs_40345 0 0 1 0 1 KIAA1217 chr10:24817048 5'GT 24817048 Upstream 46bp
chr10 24817003 24817003 1 + C T UCEC 24816992 + 24816972 24817012 41 ACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTGCCAA ACCAAATCTGGAGATGCCGCCAGCCACAGGCTCACTGCCAA < 41bp 1 0.250882894579743 1 0.69299578666687 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816992 chr10:24817003 nonsynonymous SNV 0.002 1 32 hm5C_associated_SNPs_40346 0 0 1 0 1 KIAA1217 chr10:24817048 5'GT 24817048 Upstream 46bp
chr17 45757957 45757957 1 + G A UCEC 45757956 + 45757936 45757976 41 ATGAATTGTTAACTGAAGGGCGGAGATCGAAGACTAACAAA ATGAATTGTTAACTGAAGGGCAGAGATCGAAGACTAACAAA < 41bp 1 0.357148945768975 1 0.231601715087891 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45757956 chr17:45757957 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_40349 0 0 1 0 2 KPNB1 chr17:45757874 3'AG 45757874 Downstream 84bp
chr17 45757957 45757957 1 + G A UCEC 45757956 + 45757936 45757976 41 ATGAATTGTTAACTGAAGGGCGGAGATCGAAGACTAACAAA ATGAATTGTTAACTGAAGGGCAGAGATCGAAGACTAACAAA < 41bp 1 0.357148945768975 1 0.231601715087891 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45757956 chr17:45757957 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_40349 0 0 1 0 2 KPNB1 chr17:45758035 5'GT 45758035 Upstream 79bp
chr14 24634125 24634125 1 + G A UCEC 24634110 + 24634090 24634130 41 CACCTGGGCCAGGCCCGCATCTGCTGCCCAGCAACGAGTGC CACCTGGGCCAGGCCCGCATCTGCTGCCCAGCAACAAGTGC < 41bp 1 0.553441960231784 1 0.523246705532074 experiment 0.893116079536432 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRF9 ENSG00000213928 CDS Human protein_coding chr14:24634110 chr14:24634125 nonsynonymous SNV 0.990 1 36 hm5C_associated_SNPs_40350 0 0 0 0 1 IRF9 chr14:24634164 5'GT 24634164 Upstream 40bp
chr7 150761823 150761823 1 + C T UCEC 150761806 + 150761786 150761826 41 GCCAGCGAGGCTGAGGGGGCCCGGGCTCTCACTCAGCCGTC GCCAGCGAGGCTGAGGGGGCCCGGGCTCTCACTCAGCTGTC < 41bp 1 0.539258563340379 1 0.466611444950104 experiment 0.921482873319242 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150761806 chr7:150761823 nonsynonymous SNV 0.001 0 38 hm5C_associated_SNPs_40352 0 0 1 0 1 SLC4A2 chr7:150761854 5'GT 150761854 Upstream 32bp
chr8 92092939 92092939 1 + C T UCEC 92092950 + 92092930 92092970 41 ACACAGCTGCATGGGGAGGTCAGCTTGAGGTAAGTTTGTAG ACACAGCTGTATGGGGAGGTCAGCTTGAGGTAAGTTTGTAG < 41bp 1 0.600725503010964 1 0.818793058395386 experiment 0.798548993978073 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OTUD6B ENSG00000155100 CDS Human protein_coding chr8:92092950 chr8:92092939 nonsynonymous SNV 0.999 1 10 hm5C_associated_SNPs_40353 0 0 1 0 2 OTUD6B chr8:92092897 3'AG 92092897 Downstream 43bp
chr8 92092939 92092939 1 + C T UCEC 92092950 + 92092930 92092970 41 ACACAGCTGCATGGGGAGGTCAGCTTGAGGTAAGTTTGTAG ACACAGCTGTATGGGGAGGTCAGCTTGAGGTAAGTTTGTAG < 41bp 1 0.600725503010964 1 0.818793058395386 experiment 0.798548993978073 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OTUD6B ENSG00000155100 CDS Human protein_coding chr8:92092950 chr8:92092939 nonsynonymous SNV 0.999 1 10 hm5C_associated_SNPs_40353 0 0 1 0 2 OTUD6B chr8:92092958 5'GT 92092958 Upstream 20bp
chr16 30736387 30736387 1 + G A UCEC 30736401 + 30736381 30736421 41 CACCTCGTTCCCCTTTTTATCTGGTAAGTTTTACTTCCTCA CACCTCATTCCCCTTTTTATCTGGTAAGTTTTACTTCCTCA < 41bp 1 0.406546938851531 1 0.175181895494461 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30736401 chr16:30736387 nonsynonymous SNV 1.000 5 7 hm5C_associated_SNPs_40355 0 0 1 0 1 SRCAP chr16:30736403 5'GT 30736403 Upstream 17bp
chr1 10231371 10231371 1 + C A UCEC 10231351 + 10231331 10231371 41 GATATTTACTTACAGCTGGACTGTGCTCGGTTCGCGAAAGC GATATTTACTTACAGCTGGACTGTGCTCGGTTCGCGAAAGA < 41bp 1 0.21287136012134 1 0.149365782737732 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10231351 chr1:10231371 nonsynonymous SNV 0.995 4 41 hm5C_associated_SNPs_40356 0 0 1 0 1 UBE4B chr1:10231387 5'GT 10231387 Upstream 17bp
chr7 94043246 94043246 1 + C T UCEC 94043239 + 94043219 94043259 41 GAAAAGGTGAACAGGGTCCCCCTGGTCCTCCAGGCTTCCAG GAAAAGGTGAACAGGGTCCCCCTGGTCTTCCAGGCTTCCAG < 41bp 1 0.147132644728823 1 0.0650010108947754 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94043239 chr7:94043246 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_40357 0 0 0 0 1 COL1A2 chr7:94043259 5'GT 94043259 Upstream 14bp
chr19 47763896 47763896 1 + G A UCEC 47763890 + 47763870 47763910 41 GGTCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGG GGTCTCCTGGGACCCCTCGGCCCCCAAGGGCCAGCAAGGGG < 41bp 1 0.192725921324049 1 0.181960314512253 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763890 chr19:47763896 nonsynonymous SNV 0.998 3 27 hm5C_associated_SNPs_40358 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 52bp
chr19 47763896 47763896 1 + G A UCEC 47763891 + 47763871 47763911 41 GTCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGG GTCTCCTGGGACCCCTCGGCCCCCAAGGGCCAGCAAGGGGG < 41bp 1 0.599947918705147 1 0.439490735530853 experiment 0.800104162589705 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763891 chr19:47763896 nonsynonymous SNV 0.998 3 26 hm5C_associated_SNPs_40359 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 52bp
chr19 47763896 47763896 1 + G A UCEC 47763892 + 47763872 47763912 41 TCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGGG TCTCCTGGGACCCCTCGGCCCCCAAGGGCCAGCAAGGGGGG < 41bp 1 0.494915382940664 1 0.26748788356781 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763892 chr19:47763896 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_40360 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 52bp
chr19 47763896 47763896 1 + G A UCEC 47763893 + 47763873 47763913 41 CTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGGGC CTCCTGGGACCCCTCGGCCCCCAAGGGCCAGCAAGGGGGGC < 41bp 1 0.31055177078279 1 0.501557588577271 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763893 chr19:47763896 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_40361 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 52bp
chr19 47763896 47763896 1 + G A UCEC 47763913 + 47763893 47763933 41 CCAGGGGCCAGCAAGGGGGGCCGGACTCCTCCACAGCAGGG CCAAGGGCCAGCAAGGGGGGCCGGACTCCTCCACAGCAGGG < 41bp 1 0.473021822052727 1 0.424394637346268 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763913 chr19:47763896 nonsynonymous SNV 0.998 3 4 hm5C_associated_SNPs_40362 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 52bp
chr12 95868057 95868057 1 + A G UCEC 95868059 + 95868039 95868079 41 CTCTACGGCTGAGGAAGCAGCCAAGAAAAAAAGACGAAAGA CTCTACGGCTGAGGAAGCGGCCAAGAAAAAAAGACGAAAGA < 41bp 1 0.271476564834077 1 0.489746391773224 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95868059 chr12:95868057 synonymous SNV . 0 19 hm5C_associated_SNPs_40363 0 0 1 0 1 METAP2 chr12:95868106 5'GT 95868106 Upstream 50bp
chr18 74622084 74622084 1 + G T UCEC 74622068 + 74622048 74622088 41 CTCTGCGAGGGCACGTAGACCAGTTTGAAGAGCAGAGCCCT CTCTGCGAGGGCACGTAGACCAGTTTGAAGAGCAGATCCCT < 41bp 1 0.27912438726379 1 0.261260151863098 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74622068 chr18:74622084 nonsynonymous SNV 0.003 0 37 hm5C_associated_SNPs_40365 0 0 0 0 2 ZNF236 chr18:74622024 3'AG 74622024 Downstream 61bp
chr18 74622084 74622084 1 + G T UCEC 74622068 + 74622048 74622088 41 CTCTGCGAGGGCACGTAGACCAGTTTGAAGAGCAGAGCCCT CTCTGCGAGGGCACGTAGACCAGTTTGAAGAGCAGATCCCT < 41bp 1 0.27912438726379 1 0.261260151863098 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74622068 chr18:74622084 nonsynonymous SNV 0.003 0 37 hm5C_associated_SNPs_40365 0 0 0 0 2 ZNF236 chr18:74622125 5'GT 74622125 Upstream 42bp
chr7 44801161 44801161 1 + C T UCEC 44801172 + 44801152 44801192 41 TTCCAGCTGCGAGACTCAGTCTACAAGACCCTGATAATGAG TTCCAGCTGTGAGACTCAGTCTACAAGACCCTGATAATGAG < 41bp 1 0.623523549027576 1 0.899961709976196 experiment 0.752952901944848 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44801172 chr7:44801161 stopgain 0.995 1 10 hm5C_associated_SNPs_40366 0 0 1 0 1 ZMIZ2 chr7:44801192 5'GT 44801192 Upstream 32bp
chr22 44330508 44330508 1 + G A UCEC 44330489 + 44330469 44330509 41 GCTTGCTTTGCTCACAGGTGCTGGGAGAGATATGCCTTCGA GCTTGCTTTGCTCACAGGTGCTGGGAGAGATATGCCTTCAA < 41bp 1 0.705562376058036 1 0.711024463176727 experiment 0.588875247883929 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44330489 chr22:44330508 nonsynonymous SNV 0.377 0 40 hm5C_associated_SNPs_40367 0 0 1 0 1 PNPLA3 chr22:44330486 3'AG 44330486 Downstream 23bp
chr19 18306833 18306833 1 + G A UCEC 18306835 + 18306815 18306855 41 GTTCCTCTGACACCCCCAGGCTGTGTGGCCCTGGACACCCG GTTCCTCTGACACCCCCAAGCTGTGTGGCCCTGGACACCCG < 41bp 1 0.661079603033694 1 0.469802141189575 experiment 0.677840793932613 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MPV17L2 ENSG00000254858 CDS Human protein_coding chr19:18306835 chr19:18306833 nonsynonymous SNV 0.065 0 19 hm5C_associated_SNPs_40368 0 0 1 0 1 MPV17L2 chr19:18306809 3'AG 18306809 Downstream 25bp
chr11 126279211 126279211 1 + C A UCEC 126279193 + 126279173 126279213 41 GTTTCTGGAAACAGCCTCCCCTCATCTGGGATGTCAATCCT GTTTCTGGAAACAGCCTCCCCTCATCTGGGATGTCAATACT < 41bp 1 0.304489243704343 1 0.227927803993225 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ST3GAL4 ENSG00000110080 CDS Human protein_coding chr11:126279193 chr11:126279211 nonsynonymous SNV 0.955 0 39 hm5C_associated_SNPs_40370 0 0 1 0 2 ST3GAL4 chr11:126279163 3'AG 126279163 Downstream 49bp
chr11 126279211 126279211 1 + C A UCEC 126279193 + 126279173 126279213 41 GTTTCTGGAAACAGCCTCCCCTCATCTGGGATGTCAATCCT GTTTCTGGAAACAGCCTCCCCTCATCTGGGATGTCAATACT < 41bp 1 0.304489243704343 1 0.227927803993225 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ST3GAL4 ENSG00000110080 CDS Human protein_coding chr11:126279193 chr11:126279211 nonsynonymous SNV 0.955 0 39 hm5C_associated_SNPs_40370 0 0 1 0 2 ST3GAL4 chr11:126279306 5'GT 126279306 Upstream 96bp
chr11 44129793 44129793 1 + C T UCEC 44129787 + 44129767 44129807 41 GAGACAGCACAAGCGATGGCCCAGCTCTCTAGGTATCTCAC GAGACAGCACAAGCGATGGCCCAGCTTTCTAGGTATCTCAC < 41bp 1 0.101691251875938 1 0.104855865240097 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129787 chr11:44129793 synonymous SNV . 0 27 hm5C_associated_SNPs_40372 0 0 1 0 1 EXT2 chr11:44129798 5'GT 44129798 Upstream 6bp
chr13 111160549 111160549 1 + T G UCEC 111160562 + 111160542 111160582 41 TTGTGGATCGGATATTCCTTCCTCATGGTATGTGGTATTTG TTGTGGAGCGGATATTCCTTCCTCATGGTATGTGGTATTTG < 41bp 1 0.0938758829203037 1 0.081095278263092 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111160562 chr13:111160549 nonsynonymous SNV 0.817 5 8 hm5C_associated_SNPs_40374 0 0 0 0 1 COL4A2 chr13:111160568 5'GT 111160568 Upstream 20bp
chr7 16737765 16737765 1 + C T UCEC 16737766 + 16737746 16737786 41 AATACTGCTACGACAACATCCATTTCATGAAAGCCTTTCAG AATACTGCTACGACAACATTCATTTCATGAAAGCCTTTCAG < 41bp 1 0.078791593376519 1 0.251858532428741 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BZW2 ENSG00000136261 CDS Human protein_coding chr7:16737766 chr7:16737765 synonymous SNV . 0 20 hm5C_associated_SNPs_40376 0 0 1 0 1 BZW2 chr7:16737673 3'AG 16737673 Downstream 93bp
chr16 30960768 30960768 1 + G A UCEC 30960753 + 30960733 30960773 41 CAGTCAGCACTCGCTGCGGGCGCTCAGCTGGCGCCGCCTCT CAGTCAGCACTCGCTGCGGGCGCTCAGCTGGCGCCACCTCT < 41bp 1 0.133214661494911 1 0.0840810835361481 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ORAI3 ENSG00000175938 CDS Human protein_coding chr16:30960753 chr16:30960768 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_40377 0 0 1 0 1 ORAI3 chr16:30960838 5'GT 30960838 Upstream 71bp
chr16 30960768 30960768 1 + G A UCEC 30960757 + 30960737 30960777 41 CAGCACTCGCTGCGGGCGCTCAGCTGGCGCCGCCTCTACCT CAGCACTCGCTGCGGGCGCTCAGCTGGCGCCACCTCTACCT < 41bp 1 0.688608281680682 1 0.438232570886612 experiment 0.622783436638637 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ORAI3 ENSG00000175938 CDS Human protein_coding chr16:30960757 chr16:30960768 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_40378 0 0 1 0 1 ORAI3 chr16:30960838 5'GT 30960838 Upstream 71bp
chr3 184037539 184037539 1 + G T UCEC 184037529 + 184037509 184037549 41 CAGTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAA CAGTTTCCCACTGGCGTGGCCCCCACCCCATTTTTGATGAA < 41bp 1 0.350683360122021 1 0.1387899518013 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037529 chr3:184037539 nonsynonymous SNV 0.999 3 31 hm5C_associated_SNPs_40379 0 0 1 0 2 EIF4G1 chr3:184037477 3'AG 184037477 Downstream 63bp
chr3 184037539 184037539 1 + G T UCEC 184037529 + 184037509 184037549 41 CAGTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAA CAGTTTCCCACTGGCGTGGCCCCCACCCCATTTTTGATGAA < 41bp 1 0.350683360122021 1 0.1387899518013 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037529 chr3:184037539 nonsynonymous SNV 0.999 3 31 hm5C_associated_SNPs_40379 0 0 1 0 2 EIF4G1 chr3:184037589 5'GT 184037589 Upstream 51bp
chr3 184037539 184037539 1 + G T UCEC 184037530 + 184037510 184037550 41 AGTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAAC AGTTTCCCACTGGCGTGGCCCCCACCCCATTTTTGATGAAC < 41bp 1 0.0800184198904789 1 0.0718062520027161 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037530 chr3:184037539 nonsynonymous SNV 0.999 3 30 hm5C_associated_SNPs_40380 0 0 1 0 2 EIF4G1 chr3:184037477 3'AG 184037477 Downstream 63bp
chr3 184037539 184037539 1 + G T UCEC 184037530 + 184037510 184037550 41 AGTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAAC AGTTTCCCACTGGCGTGGCCCCCACCCCATTTTTGATGAAC < 41bp 1 0.0800184198904789 1 0.0718062520027161 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037530 chr3:184037539 nonsynonymous SNV 0.999 3 30 hm5C_associated_SNPs_40380 0 0 1 0 2 EIF4G1 chr3:184037589 5'GT 184037589 Upstream 51bp
chr3 184037539 184037539 1 + G T UCEC 184037531 + 184037511 184037551 41 GTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAACC GTTTCCCACTGGCGTGGCCCCCACCCCATTTTTGATGAACC < 41bp 1 0.0813051534611872 1 0.154028058052063 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037531 chr3:184037539 nonsynonymous SNV 0.999 3 29 hm5C_associated_SNPs_40381 0 0 1 0 2 EIF4G1 chr3:184037477 3'AG 184037477 Downstream 63bp
chr3 184037539 184037539 1 + G T UCEC 184037531 + 184037511 184037551 41 GTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAACC GTTTCCCACTGGCGTGGCCCCCACCCCATTTTTGATGAACC < 41bp 1 0.0813051534611872 1 0.154028058052063 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037531 chr3:184037539 nonsynonymous SNV 0.999 3 29 hm5C_associated_SNPs_40381 0 0 1 0 2 EIF4G1 chr3:184037589 5'GT 184037589 Upstream 51bp
chr3 184037539 184037539 1 + G T UCEC 184037534 + 184037514 184037554 41 TCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAACCAGC TCCCACTGGCGTGGCCCCCACCCCATTTTTGATGAACCAGC < 41bp 1 0.604615912372382 1 0.493823975324631 experiment 0.790768175255237 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037534 chr3:184037539 nonsynonymous SNV 0.999 3 26 hm5C_associated_SNPs_40382 0 0 1 0 2 EIF4G1 chr3:184037477 3'AG 184037477 Downstream 63bp
chr3 184037539 184037539 1 + G T UCEC 184037534 + 184037514 184037554 41 TCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAACCAGC TCCCACTGGCGTGGCCCCCACCCCATTTTTGATGAACCAGC < 41bp 1 0.604615912372382 1 0.493823975324631 experiment 0.790768175255237 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037534 chr3:184037539 nonsynonymous SNV 0.999 3 26 hm5C_associated_SNPs_40382 0 0 1 0 2 EIF4G1 chr3:184037589 5'GT 184037589 Upstream 51bp
chr11 988580 988580 1 + G A UCEC 988594 + 988574 988614 41 GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGCGACCGC GGCAGCAGGCCGTGGACCTCCTCTACGCCATGTGCGACCGC < 41bp 1 0.732988198845452 1 0.50935822725296 experiment 0.534023602309096 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:988594 chr11:988580 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_40383 0 0 1 0 1 AP2A2 chr11:988552 3'AG 988552 Downstream 29bp
chr14 20943223 20943223 1 + T C UCEC 20943217 + 20943197 20943237 41 GAGATAATTCAACCTGTGTCCTAGGTTTGGAGATCGTTTCC GAGATAATTCAACCTGTGTCCTAGGTCTGGAGATCGTTTCC < 41bp 1 0.438495400469362 1 0.166804909706116 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNP ENSG00000198805 CDS Human protein_coding chr14:20943217 chr14:20943223 nonsynonymous SNV 1.000 5 27 hm5C_associated_SNPs_40384 0 0 1 0 1 PNP chr14:20943221 3'AG 20943221 Downstream 3bp
chr1 21900186 21900186 1 + C T UCEC 21900169 + 21900149 21900189 41 CCTCCTCAGGTCTCTTCGAGCCAGGGGACATGCAGTACGAG CCTCCTCAGGTCTCTTCGAGCCAGGGGACATGCAGTATGAG < 41bp 1 0.382503201370966 1 0.789461851119995 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALPL ENSG00000162551 CDS Human protein_coding chr1:21900169 chr1:21900186 synonymous SNV . 0 38 hm5C_associated_SNPs_40385 0 0 0 0 1 ALPL chr1:21900158 3'AG 21900158 Downstream 29bp
chr1 21900186 21900186 1 + C T UCEC 21900170 + 21900150 21900190 41 CTCCTCAGGTCTCTTCGAGCCAGGGGACATGCAGTACGAGC CTCCTCAGGTCTCTTCGAGCCAGGGGACATGCAGTATGAGC < 41bp 1 0.735678558945735 1 0.890775799751282 experiment 0.52864288210853 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALPL ENSG00000162551 CDS Human protein_coding chr1:21900170 chr1:21900186 synonymous SNV . 0 37 hm5C_associated_SNPs_40386 0 0 0 0 1 ALPL chr1:21900158 3'AG 21900158 Downstream 29bp
chr16 3707753 3707753 1 + C T UCEC 3707766 + 3707746 3707786 41 CGAGGCGCCGTTGTTCCCGACTCGGCTCTTCCCTTTAACTT CGAGGCGTCGTTGTTCCCGACTCGGCTCTTCCCTTTAACTT < 41bp 1 0.672240479129027 1 0.477557629346848 experiment 0.655519041741945 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707766 chr16:3707753 nonsynonymous SNV 0.001 1 8 hm5C_associated_SNPs_40387 0 0 0 0 2 DNASE1 chr16:3707721 3'AG 3707721 Downstream 33bp
chr16 3707753 3707753 1 + C T UCEC 3707766 + 3707746 3707786 41 CGAGGCGCCGTTGTTCCCGACTCGGCTCTTCCCTTTAACTT CGAGGCGTCGTTGTTCCCGACTCGGCTCTTCCCTTTAACTT < 41bp 1 0.672240479129027 1 0.477557629346848 experiment 0.655519041741945 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707766 chr16:3707753 nonsynonymous SNV 0.001 1 8 hm5C_associated_SNPs_40387 0 0 0 0 2 DNASE1 chr16:3707817 5'GT 3707817 Upstream 65bp
chr7 76110038 76110038 1 + C T UCEC 76110024 + 76110004 76110044 41 GCCCACAGCATCCCCTTGGGCCAGGCAGACCCCTCGCTGGC GCCCACAGCATCCCCTTGGGCCAGGCAGACCCCTTGCTGGC < 41bp 1 0.414758796563854 1 0.184913784265518 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110024 chr7:76110038 nonsynonymous SNV 0.997 0 35 hm5C_associated_SNPs_40388 0 0 0 0 1 DTX2 chr7:76110094 5'GT 76110094 Upstream 57bp
chr7 76110038 76110038 1 + C T UCEC 76110025 + 76110005 76110045 41 CCCACAGCATCCCCTTGGGCCAGGCAGACCCCTCGCTGGCC CCCACAGCATCCCCTTGGGCCAGGCAGACCCCTTGCTGGCC < 41bp 1 0.36077158960136 1 0.391977310180664 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110025 chr7:76110038 nonsynonymous SNV 0.997 0 34 hm5C_associated_SNPs_40389 0 0 0 0 1 DTX2 chr7:76110094 5'GT 76110094 Upstream 57bp
chr7 76110038 76110038 1 + C T UCEC 76110029 + 76110009 76110049 41 CAGCATCCCCTTGGGCCAGGCAGACCCCTCGCTGGCCCCTT CAGCATCCCCTTGGGCCAGGCAGACCCCTTGCTGGCCCCTT < 41bp 1 0.182695522624085 1 0.807713985443115 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110029 chr7:76110038 nonsynonymous SNV 0.997 0 30 hm5C_associated_SNPs_40390 0 0 0 0 1 DTX2 chr7:76110094 5'GT 76110094 Upstream 57bp
chr16 70500150 70500150 1 + T C UCEC 70500158 + 70500138 70500178 41 TGCTGGACATCATGACCTATCGGGTGAGGCTGGGTGGTGGC TGCTGGACATCACGACCTATCGGGTGAGGCTGGGTGGTGGC < 41bp 1 0.782107591953654 1 0.860895276069641 experiment 0.435784816092691 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FUK ENSG00000157353 CDS Human protein_coding chr16:70500158 chr16:70500150 nonsynonymous SNV 0.989 2 13 hm5C_associated_SNPs_40391 0 0 1 0 1 FUK chr16:70500160 5'GT 70500160 Upstream 11bp
chr8 21859735 21859735 1 + C T UCEC 21859721 + 21859701 21859741 41 CCAAGAAGAGGACCACACCCCTGAACCAGGAGAGCGACCGC CCAAGAAGAGGACCACACCCCTGAACCAGGAGAGTGACCGC < 41bp 1 0.719634390788567 1 0.837792336940765 experiment 0.560731218422867 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21859721 chr8:21859735 synonymous SNV . 0 35 hm5C_associated_SNPs_40392 0 0 1 0 1 XPO7 chr8:21859783 5'GT 21859783 Upstream 49bp
chr18 9525736 9525736 1 + T C UCEC 9525724 + 9525704 9525744 41 CATTTGCTTTCTAGGAGTTTCTTTTGAATTGTTTACATCGA CATTTGCTTTCTAGGAGTTTCTTTTGAATTGTCTACATCGA < 41bp 1 0.0570318857717621 1 0.183971703052521 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RALBP1 ENSG00000017797 CDS Human protein_coding chr18:9525724 chr18:9525736 synonymous SNV . 0 33 hm5C_associated_SNPs_40393 0 0 1 0 1 RALBP1 chr18:9525718 3'AG 9525718 Downstream 19bp
chr11 65156957 65156957 1 + G A UCEC 65156938 + 65156918 65156958 41 CACCGCGCTGTCCGCGAGGTCCTGCAGCTTCCAGACATCGC CACCGCGCTGTCCGCGAGGTCCTGCAGCTTCCAGACATCAC < 41bp 1 0.0738062428583432 1 0.0940438807010651 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65156938 chr11:65156957 nonsynonymous SNV 0.061 4 40 hm5C_associated_SNPs_40394 0 0 1 0 1 FRMD8 chr11:65156999 5'GT 65156999 Upstream 43bp
chr1 1425665 1425665 1 + C T UCEC 1425666 + 1425646 1425686 41 GGTCCTGGCCAGCAATCTGCCTGAGCAGTTCGACTGTGCCA GGTCCTGGCCAGCAATCTGTCTGAGCAGTTCGACTGTGCCA < 41bp 1 0.672996362285231 1 0.421069860458374 experiment 0.654007275429538 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1425666 chr1:1425665 nonsynonymous SNV 0.004 5 20 hm5C_associated_SNPs_40395 0 0 1 0 1 ATAD3B chr1:1425637 3'AG 1425637 Downstream 29bp
chr22 24236700 24236700 1 + C T UCEC 24236718 + 24236698 24236738 41 GCCTCCGTGCCGGACGGGTTCCTCTCCGAGCTCACCCAGCA GCTTCCGTGCCGGACGGGTTCCTCTCCGAGCTCACCCAGCA < 41bp 1 0.185118324193175 1 0.0489819943904877 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MIF ENSG00000240972 CDS Human protein_coding chr22:24236718 chr22:24236700 synonymous SNV . 0 3 hm5C_associated_SNPs_40396 0 0 1 0 1 MIF chr22:24236769 5'GT 24236769 Upstream 70bp
chr1 201938664 201938664 1 + C T UCEC 201938644 + 201938624 201938664 41 AGTTGCCTTCAACTCAGTTACCTTCCTCACCTTTTGGAGAC AGTTGCCTTCAACTCAGTTACCTTCCTCACCTTTTGGAGAT < 41bp 1 0.082895962740545 1 0.0570549070835114 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TIMM17A ENSG00000134375 CDS Human protein_coding chr1:201938644 chr1:201938664 synonymous SNV . 0 41 hm5C_associated_SNPs_40397 0 0 1 0 1 TIMM17A chr1:201938597 3'AG 201938597 Downstream 68bp
chr1 154304467 154304467 1 + G A UCEC 154304485 + 154304465 154304505 41 TGGGCTGTGTTACATAGAGACAGCAGAACTTGATGGGTAAG TGAGCTGTGTTACATAGAGACAGCAGAACTTGATGGGTAAG < 41bp 1 0.639049301793176 1 0.388315707445145 experiment 0.721901396413649 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154304485 chr1:154304467 nonsynonymous SNV 0.989 4 3 hm5C_associated_SNPs_40398 0 0 1 0 2 ATP8B2 chr1:154304430 3'AG 154304430 Downstream 38bp
chr1 154304467 154304467 1 + G A UCEC 154304485 + 154304465 154304505 41 TGGGCTGTGTTACATAGAGACAGCAGAACTTGATGGGTAAG TGAGCTGTGTTACATAGAGACAGCAGAACTTGATGGGTAAG < 41bp 1 0.639049301793176 1 0.388315707445145 experiment 0.721901396413649 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154304485 chr1:154304467 nonsynonymous SNV 0.989 4 3 hm5C_associated_SNPs_40398 0 0 1 0 2 ATP8B2 chr1:154304500 5'GT 154304500 Upstream 34bp
chr12 112893766 112893766 1 + A G UCEC 112893754 + 112893734 112893774 41 CAACTGCTGTACTCGATCAGCCCCTTAACACGACTCGTATA CAACTGCTGTACTCGATCAGCCCCTTAACACGGCTCGTATA < 41bp 1 0.0951418769742557 1 0.0536753237247467 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112893754 chr12:112893766 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_40400 0 0 1 0 1 PTPN11 chr12:112893754 3'AG 112893754 Downstream 13bp
chr2 37458865 37458865 1 + G T UCEC 37458880 + 37458860 37458900 41 GCTGAGGTCAGGTTTGGGGCCGTTGTGTGCCGTGGCGCGCG GCTGATGTCAGGTTTGGGGCCGTTGTGTGCCGTGGCGCGCG < 41bp 1 0.561096198548319 1 0.137193262577057 experiment 0.877807602903362 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37458880 chr2:37458865 nonsynonymous SNV 0.004 1 6 hm5C_associated_SNPs_40402 0 0 1 0 1 NDUFAF7 chr2:37458903 5'GT 37458903 Upstream 39bp
chr9 37430589 37430589 1 + A G UCEC 37430599 + 37430579 37430619 41 GGACTCTGCAACAAGGACTTCTTCCAGAAGATGAAGGAAAC GGACTCTGCAGCAAGGACTTCTTCCAGAAGATGAAGGAAAC < 41bp 1 0.102700254680802 1 0.151582390069962 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37430599 chr9:37430589 nonsynonymous SNV 0.999 1 11 hm5C_associated_SNPs_40404 0 0 1 0 1 GRHPR chr9:37430643 5'GT 37430643 Upstream 55bp
chr19 45573289 45573289 1 + A C UCEC 45573290 + 45573270 45573310 41 GCCTTCGCAGGGAGCGGGAACGCCGAGAGAAGGAGAGAGAA GCCTTCGCAGGGAGCGGGACCGCCGAGAGAAGGAGAGAGAA < 41bp 1 0.661316053761101 1 0.39231339097023 experiment 0.677367892477798 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CLASRP ENSG00000104859 CDS Human protein_coding chr19:45573290 chr19:45573289 nonsynonymous SNV 0.989 3 20 hm5C_associated_SNPs_40405 0 0 1 0 2 CLASRP chr19:45573280 3'AG 45573280 Downstream 10bp
chr19 45573289 45573289 1 + A C UCEC 45573290 + 45573270 45573310 41 GCCTTCGCAGGGAGCGGGAACGCCGAGAGAAGGAGAGAGAA GCCTTCGCAGGGAGCGGGACCGCCGAGAGAAGGAGAGAGAA < 41bp 1 0.661316053761101 1 0.39231339097023 experiment 0.677367892477798 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CLASRP ENSG00000104859 CDS Human protein_coding chr19:45573290 chr19:45573289 nonsynonymous SNV 0.989 3 20 hm5C_associated_SNPs_40405 0 0 1 0 2 CLASRP chr19:45573362 5'GT 45573362 Upstream 74bp
chr19 45573289 45573289 1 + A C UCEC 45573292 + 45573272 45573312 41 CTTCGCAGGGAGCGGGAACGCCGAGAGAAGGAGAGAGAAGA CTTCGCAGGGAGCGGGACCGCCGAGAGAAGGAGAGAGAAGA < 41bp 1 0.456283603241897 1 0.529541909694672 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CLASRP ENSG00000104859 CDS Human protein_coding chr19:45573292 chr19:45573289 nonsynonymous SNV 0.989 3 18 hm5C_associated_SNPs_40406 0 0 1 0 2 CLASRP chr19:45573280 3'AG 45573280 Downstream 10bp
chr19 45573289 45573289 1 + A C UCEC 45573292 + 45573272 45573312 41 CTTCGCAGGGAGCGGGAACGCCGAGAGAAGGAGAGAGAAGA CTTCGCAGGGAGCGGGACCGCCGAGAGAAGGAGAGAGAAGA < 41bp 1 0.456283603241897 1 0.529541909694672 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CLASRP ENSG00000104859 CDS Human protein_coding chr19:45573292 chr19:45573289 nonsynonymous SNV 0.989 3 18 hm5C_associated_SNPs_40406 0 0 1 0 2 CLASRP chr19:45573362 5'GT 45573362 Upstream 74bp
chr7 5336821 5336821 1 + G A UCEC 5336820 + 5336800 5336840 41 CACGACGTTGTCGCCGGGGACGTCCACTTCGTAAGTGCGCA CACGACGTTGTCGCCGGGGACATCCACTTCGTAAGTGCGCA < 41bp 1 0.0623177701615038 1 0.0926669538021088 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5336820 chr7:5336821 nonsynonymous SNV 0.191 0 22 hm5C_associated_SNPs_40407 0 0 1 0 1 SLC29A4 chr7:5336829 5'GT 5336829 Upstream 9bp
chr1 110171397 110171397 1 + G A UCEC 110171392 + 110171372 110171412 41 CATGCACCGCGTGCACTCCCCCAACGTGCGCTGGCTGGTGC CATGCACCGCGTGCACTCCCCCAACATGCGCTGGCTGGTGC < 41bp 1 0.177573152087948 1 0.597100079059601 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110171392 chr1:110171397 nonsynonymous SNV 0.998 4 26 hm5C_associated_SNPs_40408 0 0 0 0 1 AMPD2 chr1:110171428 5'GT 110171428 Upstream 32bp
chr11 33094111 33094111 1 + G A UCEC 33094103 + 33094083 33094123 41 CAGTCCCTGGGGGACTCAGTCCAGTTCAGAGAGAGCTGGAG CAGTCCCTGGGGGACTCAGTCCAGTTCAAAGAGAGCTGGAG < 41bp 1 0.364051472194598 1 0.824750483036041 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33094103 chr11:33094111 synonymous SNV . 0 29 hm5C_associated_SNPs_40409 0 0 0 0 2 TCP11L1 chr11:33094020 3'AG 33094020 Downstream 92bp
chr11 33094111 33094111 1 + G A UCEC 33094103 + 33094083 33094123 41 CAGTCCCTGGGGGACTCAGTCCAGTTCAGAGAGAGCTGGAG CAGTCCCTGGGGGACTCAGTCCAGTTCAAAGAGAGCTGGAG < 41bp 1 0.364051472194598 1 0.824750483036041 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33094103 chr11:33094111 synonymous SNV . 0 29 hm5C_associated_SNPs_40409 0 0 0 0 2 TCP11L1 chr11:33094199 5'GT 33094199 Upstream 89bp
chr11 33094111 33094111 1 + G A UCEC 33094118 + 33094098 33094138 41 TCAGTCCAGTTCAGAGAGAGCTGGAGGAAGTTGCTATTAAA TCAGTCCAGTTCAAAGAGAGCTGGAGGAAGTTGCTATTAAA < 41bp 1 0.710685776415814 1 0.743296384811401 experiment 0.578628447168372 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33094118 chr11:33094111 synonymous SNV . 0 14 hm5C_associated_SNPs_40410 0 0 0 0 2 TCP11L1 chr11:33094020 3'AG 33094020 Downstream 92bp
chr11 33094111 33094111 1 + G A UCEC 33094118 + 33094098 33094138 41 TCAGTCCAGTTCAGAGAGAGCTGGAGGAAGTTGCTATTAAA TCAGTCCAGTTCAAAGAGAGCTGGAGGAAGTTGCTATTAAA < 41bp 1 0.710685776415814 1 0.743296384811401 experiment 0.578628447168372 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33094118 chr11:33094111 synonymous SNV . 0 14 hm5C_associated_SNPs_40410 0 0 0 0 2 TCP11L1 chr11:33094199 5'GT 33094199 Upstream 89bp
chr7 150725691 150725691 1 + C A UCEC 150725672 + 150725652 150725692 41 GCAGGCTGCTACCGCCCCTCCGCTTCCAGACATTCTCAGCT GCAGGCTGCTACCGCCCCTCCGCTTCCAGACATTCTCAGAT < 41bp 1 0.14745959888176 1 0.189962476491928 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150725672 chr7:150725691 nonsynonymous SNV 0.950 3 40 hm5C_associated_SNPs_40413 0 0 1 0 1 ABCB8 chr7:150725697 5'GT 150725697 Upstream 7bp
chr16 22337546 22337546 1 + C T UCEC 22337560 + 22337540 22337580 41 TCGGACCGCATGCTACAGGACACGGTGCTGGCCGCCGGTTG TCGGACTGCATGCTACAGGACACGGTGCTGGCCGCCGGTTG < 41bp 1 0.733698340571862 1 0.203777283430099 experiment 0.532603318856275 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22337560 chr16:22337546 nonsynonymous SNV 0.474 2 7 hm5C_associated_SNPs_40414 0 0 1 0 1 POLR3E chr16:22337599 5'GT 22337599 Upstream 54bp
chr1 100757032 100757032 1 + G T UCEC 100757044 + 100757024 100757064 41 ATGCCAAGGAATTGGGATGACAAATCCAAATCTATAGAGTA ATGCCAAGTAATTGGGATGACAAATCCAAATCTATAGAGTA < 41bp 1 0.246406477252675 1 0.428323566913605 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RTCA ENSG00000137996 CDS Human protein_coding chr1:100757044 chr1:100757032 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_40416 0 0 1 0 1 RTCA chr1:100756959 3'AG 100756959 Downstream 74bp
chr19 17450311 17450311 1 + G A UCEC 17450306 + 17450286 17450326 41 CCGTGACGTGCTGGAGACCCCAGTCGACCTGGCCGGATTTC CCGTGACGTGCTGGAGACCCCAGTCAACCTGGCCGGATTTC < 41bp 1 0.265046606973203 1 0.797943711280823 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17450306 chr19:17450311 nonsynonymous SNV 0.970 1 26 hm5C_associated_SNPs_40418 0 0 1 0 1 GTPBP3 chr19:17450243 3'AG 17450243 Downstream 69bp
chr1 31899647 31899647 1 + G A UCEC 31899651 + 31899631 31899671 41 TGTCTGCGTGTCCATCGCTGCTGTCCTGCCCAAGGTCCAGG TGTCTGCGTGTCCATCACTGCTGTCCTGCCCAAGGTCCAGG < 41bp 1 0.171000739696717 1 0.0246924161911011 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31899651 chr1:31899647 nonsynonymous SNV 0.103 1 17 hm5C_associated_SNPs_40419 0 0 1 0 1 SERINC2 chr1:31899670 5'GT 31899670 Upstream 24bp
chr20 44571766 44571766 1 + G A UCEC 44571747 + 44571727 44571767 41 GTCCTGCAGGCATTGAGCCTCCACGGGAGTCTTTCAACCGC GTCCTGCAGGCATTGAGCCTCCACGGGAGTCTTTCAACCAC < 41bp 1 0.396471336122454 1 0.451240628957748 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44571747 chr20:44571766 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_40420 0 0 1 0 1 PCIF1 chr20:44571736 3'AG 44571736 Downstream 31bp
chr3 49720123 49720123 1 + G A UCEC 49720112 + 49720092 49720132 41 GACCTACAGGGCCTGCGTGGCCCGGAACCCCGTGATCAACA GACCTACAGGGCCTGCGTGGCCCGGAACCCCATGATCAACA < 41bp 1 0.499217720944396 1 0.0811667740345001 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49720112 chr3:49720123 nonsynonymous SNV 0.906 4 32 hm5C_associated_SNPs_40421 0 0 1 0 1 APEH chr3:49720169 5'GT 49720169 Upstream 47bp
chr13 24858311 24858311 1 + G A UCEC 24858291 + 24858271 24858311 41 AGTTTCTTCAGATGGAGGTACTGAGCCCTCTGCCTTAGTGG AGTTTCTTCAGATGGAGGTACTGAGCCCTCTGCCTTAGTGA < 41bp 1 0.133959343523424 1 0.227043569087982 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPATA13 ENSG00000182957;ENSG00000273167 CDS Human other chr13:24858291 chr13:24858311 nonsynonymous SNV 0.757 3 41 hm5C_associated_SNPs_40422 0 0 1 0 2 SPATA13 chr13:24858273 3'AG 24858273 Downstream 39bp
chr13 24858311 24858311 1 + G A UCEC 24858291 + 24858271 24858311 41 AGTTTCTTCAGATGGAGGTACTGAGCCCTCTGCCTTAGTGG AGTTTCTTCAGATGGAGGTACTGAGCCCTCTGCCTTAGTGA < 41bp 1 0.133959343523424 1 0.227043569087982 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPATA13 ENSG00000182957;ENSG00000273167 CDS Human other chr13:24858291 chr13:24858311 nonsynonymous SNV 0.757 3 41 hm5C_associated_SNPs_40422 0 0 1 0 2 SPATA13 chr13:24858409 5'GT 24858409 Upstream 99bp
chr22 39773683 39773683 1 + G A UCEC 39773703 + 39773683 39773723 41 GGCACAGCCGTAGGCCTCCCCGGCTTGCAGAGGCCGGCAGC AGCACAGCCGTAGGCCTCCCCGGCTTGCAGAGGCCGGCAGC < 41bp 1 0.466476466782069 1 0.457827299833298 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNGR1 ENSG00000100321 CDS Human protein_coding chr22:39773703 chr22:39773683 synonymous SNV . 0 1 hm5C_associated_SNPs_40423 0 0 1 0 1 SYNGR1 chr22:39773603 3'AG 39773603 Downstream 81bp
chr3 9803155 9803155 1 - C T UCEC 9803147 - 9803127 9803167 41 ATAGGTGTCATCGCCTACATCTTGTAAGTGGGGCTTGGCCA ATAGGTGTCATCACCTACATCTTGTAAGTGGGGCTTGGCCA < 41bp 1 0.354443271137924 1 0.173574209213257 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMK1 ENSG00000134072 CDS Human protein_coding chr3:9803147 chr3:9803155 nonsynonymous SNV 0.983 1 13 hm5C_associated_SNPs_40424 0 0 0 0 2 CAMK1 chr3:9803145 5'GT 9803145 Upstream 11bp
chr3 9803155 9803155 1 - C T UCEC 9803147 - 9803127 9803167 41 ATAGGTGTCATCGCCTACATCTTGTAAGTGGGGCTTGGCCA ATAGGTGTCATCACCTACATCTTGTAAGTGGGGCTTGGCCA < 41bp 1 0.354443271137924 1 0.173574209213257 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMK1 ENSG00000134072 CDS Human protein_coding chr3:9803147 chr3:9803155 nonsynonymous SNV 0.983 1 13 hm5C_associated_SNPs_40424 0 0 0 0 2 CAMK1 chr3:9803220 3'AG 9803220 Downstream 66bp
chr18 46284699 46284699 1 + G A UCEC 46284696 + 46284676 46284716 41 AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGCGG AACGTAAAGACAGTATTCTTCCCAAGCGCATCGGGGAGCGG < 41bp 1 0.261351709508175 1 0.130231767892838 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284696 chr18:46284699 nonsynonymous SNV 0.036 1 24 hm5C_associated_SNPs_40425 0 0 0 0 2 CTIF chr18:46284776 5'GT 46284776 Upstream 78bp
chr18 46284699 46284699 1 + G A UCEC 46284696 + 46284676 46284716 41 AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGCGG AACGTAAAGACAGTATTCTTCCCAAGCGCATCGGGGAGCGG < 41bp 1 0.261351709508175 1 0.130231767892838 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284696 chr18:46284699 nonsynonymous SNV 0.036 1 24 hm5C_associated_SNPs_40425 0 0 0 0 2 CTIF chr18:46284782 5'GT 46284782 Upstream 84bp
chr9 130575571 130575571 1 + G A UCEC 130575587 + 130575567 130575607 41 GCCCGGACCTCTGGAGTGCCCCCAGCCCAGAGCCCGGTGGG GCCCAGACCTCTGGAGTGCCCCCAGCCCAGAGCCCGGTGGG < 41bp 1 0.552443906227176 1 0.263598680496216 experiment 0.895112187545649 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FPGS ENSG00000136877 CDS Human protein_coding chr9:130575587 chr9:130575571 synonymous SNV . 0 5 hm5C_associated_SNPs_40426 0 0 0 0 1 FPGS chr9:130575474 3'AG 130575474 Downstream 98bp
chrX 69699038 69699038 1 + G A UCEC 69699058 + 69699038 69699078 41 GAACAAATGATGAACAGCAGCATGAGCTCTGGGTCTGGGTC AAACAAATGATGAACAGCAGCATGAGCTCTGGGTCTGGGTC < 41bp 1 0.40131496208458 1 0.231824815273285 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DLG3 ENSG00000082458 CDS Human protein_coding chrX:69699058 chrX:69699038 nonsynonymous SNV 0.998 3 1 hm5C_associated_SNPs_40432 0 0 1 0 2 DLG3 chrX:69699000 3'AG 69699000 Downstream 39bp
chrX 69699038 69699038 1 + G A UCEC 69699058 + 69699038 69699078 41 GAACAAATGATGAACAGCAGCATGAGCTCTGGGTCTGGGTC AAACAAATGATGAACAGCAGCATGAGCTCTGGGTCTGGGTC < 41bp 1 0.40131496208458 1 0.231824815273285 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DLG3 ENSG00000082458 CDS Human protein_coding chrX:69699058 chrX:69699038 nonsynonymous SNV 0.998 3 1 hm5C_associated_SNPs_40432 0 0 1 0 2 DLG3 chrX:69699114 5'GT 69699114 Upstream 77bp
chr9 35385731 35385731 1 + C T UCEC 35385748 + 35385728 35385768 41 TCCCTGCTGGGAGTCCTGAACGGCTTCAGGACTTAAAATCC TCCTTGCTGGGAGTCCTGAACGGCTTCAGGACTTAAAATCC < 41bp 1 0.381861893543254 1 0.560814321041107 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UNC13B ENSG00000198722 CDS Human protein_coding chr9:35385748 chr9:35385731 nonsynonymous SNV 1.000 5 4 hm5C_associated_SNPs_40434 0 0 0 0 2 UNC13B chr9:35385721 3'AG 35385721 Downstream 11bp
chr9 35385731 35385731 1 + C T UCEC 35385748 + 35385728 35385768 41 TCCCTGCTGGGAGTCCTGAACGGCTTCAGGACTTAAAATCC TCCTTGCTGGGAGTCCTGAACGGCTTCAGGACTTAAAATCC < 41bp 1 0.381861893543254 1 0.560814321041107 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UNC13B ENSG00000198722 CDS Human protein_coding chr9:35385748 chr9:35385731 nonsynonymous SNV 1.000 5 4 hm5C_associated_SNPs_40434 0 0 0 0 2 UNC13B chr9:35385810 5'GT 35385810 Upstream 80bp
chr9 137323821 137323821 1 + G A UCEC 137323830 + 137323810 137323850 41 GCTGCCTGCGCGCCATCGTCCTCTTTAACCCTGGTATGGCC GCTGCCTGCGCACCATCGTCCTCTTTAACCCTGGTATGGCC < 41bp 1 0.078593389067754 1 0.217974811792374 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RXRA ENSG00000186350 CDS Human protein_coding chr9:137323830 chr9:137323821 nonsynonymous SNV 0.835 3 12 hm5C_associated_SNPs_40435 0 0 1 0 1 RXRA chr9:137323842 5'GT 137323842 Upstream 22bp
chr17 8172163 8172163 1 + C T UCEC 8172177 + 8172157 8172197 41 GGAGTGCGCACGGGGAAGGTCAGGCCCAAGGAAGGCTGGGG GGAGTGTGCACGGGGAAGGTCAGGCCCAAGGAAGGCTGGGG < 41bp 1 0.523639284238333 1 0.774538099765778 experiment 0.952721431523334 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PFAS ENSG00000178921 CDS Human protein_coding chr17:8172177 chr17:8172163 nonsynonymous SNV 0.146 4 7 hm5C_associated_SNPs_40437 0 0 1 0 1 PFAS chr17:8172174 5'GT 8172174 Upstream 12bp
chr15 90159688 90159688 1 + G A UCEC 90159672 + 90159652 90159692 41 GACTAAGAGTGTGGCCGAGACTCCAGTGCATAAGCAGATCT GACTAAGAGTGTGGCCGAGACTCCAGTGCATAAGCAAATCT < 41bp 1 0.725696832881193 1 0.849017024040222 experiment 0.548606334237615 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TICRR ENSG00000140534 CDS Human protein_coding chr15:90159672 chr15:90159688 synonymous SNV . 0 37 hm5C_associated_SNPs_40438 0 0 1 0 2 TICRR chr15:90159636 3'AG 90159636 Downstream 53bp
chr15 90159688 90159688 1 + G A UCEC 90159672 + 90159652 90159692 41 GACTAAGAGTGTGGCCGAGACTCCAGTGCATAAGCAGATCT GACTAAGAGTGTGGCCGAGACTCCAGTGCATAAGCAAATCT < 41bp 1 0.725696832881193 1 0.849017024040222 experiment 0.548606334237615 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TICRR ENSG00000140534 CDS Human protein_coding chr15:90159672 chr15:90159688 synonymous SNV . 0 37 hm5C_associated_SNPs_40438 0 0 1 0 2 TICRR chr15:90159726 5'GT 90159726 Upstream 39bp
chr16 12618642 12618642 1 + C T UCEC 12618659 + 12618639 12618679 41 CCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC CCCTGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC < 41bp 1 0.165305617779255 1 0.259596168994904 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12618659 chr16:12618642 synonymous SNV . 0 4 hm5C_associated_SNPs_40439 0 0 0 0 2 SNX29 chr16:12618559 3'AG 12618559 Downstream 84bp
chr16 12618642 12618642 1 + C T UCEC 12618659 + 12618639 12618679 41 CCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC CCCTGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC < 41bp 1 0.165305617779255 1 0.259596168994904 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12618659 chr16:12618642 synonymous SNV . 0 4 hm5C_associated_SNPs_40439 0 0 0 0 2 SNX29 chr16:12618698 5'GT 12618698 Upstream 57bp
chr19 18960987 18960987 1 + C T UCEC 18961004 + 18960984 18961024 41 TGTCGCAACGTCTTCCTCCTCGGCTTCATCCCGGCCAAAGC TGTTGCAACGTCTTCCTCCTCGGCTTCATCCCGGCCAAAGC < 41bp 1 0.601534915336552 1 0.820359945297241 experiment 0.796930169326896 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18961004 chr19:18960987 nonsynonymous SNV 0.996 5 4 hm5C_associated_SNPs_40440 0 0 1 0 1 UPF1 chr19:18961051 5'GT 18961051 Upstream 65bp
chr11 66050512 66050512 1 + G A UCEC 66050523 + 66050503 66050543 41 CAGCTGGTGGTCCCAGAATACTCCATCCACGGCCTCTTCTG CAGCTGGTGATCCCAGAATACTCCATCCACGGCCTCTTCTG < 41bp 1 0.726864312063326 1 0.846625924110413 experiment 0.546271375873349 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CNIH2 ENSG00000174871 CDS Human protein_coding chr11:66050523 chr11:66050512 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_40441 0 0 0 1 1 CNIH2 chr11:66050506 3'AG 66050506 Downstream 7bp
chr7 36445878 36445878 1 + G A UCEC 36445868 + 36445848 36445888 41 CCCTCCCAGACCTCTGCTTTCAAATGCCTCGGCAACTCCAG CCCTCCCAGACCTCTGCTTTCAAATGCCTCAGCAACTCCAG < 41bp 1 0.598410452413032 1 0.440418154001236 experiment 0.803179095173935 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36445868 chr7:36445878 synonymous SNV . 0 31 hm5C_associated_SNPs_40443 0 0 1 0 1 ANLN chr7:36445790 3'AG 36445790 Downstream 89bp
chr12 124074935 124074935 1 + G A UCEC 124074928 + 124074908 124074948 41 AGAAATGATCAATGAGCTAGCAGTGGCGATGACAGCTGTAA AGAAATGATCAATGAGCTAGCAGTGGCAATGACAGCTGTAA < 41bp 1 0.619061278228202 1 0.238054186105728 experiment 0.761877443543596 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED2 ENSG00000086598 CDS Human protein_coding chr12:124074928 chr12:124074935 synonymous SNV . 0 28 hm5C_associated_SNPs_40448 0 0 1 0 2 TMED2 chr12:124074889 3'AG 124074889 Downstream 47bp
chr12 124074935 124074935 1 + G A UCEC 124074928 + 124074908 124074948 41 AGAAATGATCAATGAGCTAGCAGTGGCGATGACAGCTGTAA AGAAATGATCAATGAGCTAGCAGTGGCAATGACAGCTGTAA < 41bp 1 0.619061278228202 1 0.238054186105728 experiment 0.761877443543596 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED2 ENSG00000086598 CDS Human protein_coding chr12:124074928 chr12:124074935 synonymous SNV . 0 28 hm5C_associated_SNPs_40448 0 0 1 0 2 TMED2 chr12:124074996 5'GT 124074996 Upstream 62bp
chr5 71618009 71618009 1 + C T UCEC 71617999 + 71617979 71618019 41 TTTCTTTCTCTGATTTTTAGCTAAAAGATACCTACTTACAG TTTCTTTCTCTGATTTTTAGCTAAAAGATATCTACTTACAG < 41bp 1 0.292717672059585 1 0.499842941761017 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71617999 chr5:71618009 synonymous SNV . 0 31 hm5C_associated_SNPs_40449 0 0 0 0 2 PTCD2 chr5:71617999 3'AG 71617999 Downstream 11bp
chr5 71618009 71618009 1 + C T UCEC 71617999 + 71617979 71618019 41 TTTCTTTCTCTGATTTTTAGCTAAAAGATACCTACTTACAG TTTCTTTCTCTGATTTTTAGCTAAAAGATATCTACTTACAG < 41bp 1 0.292717672059585 1 0.499842941761017 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71617999 chr5:71618009 synonymous SNV . 0 31 hm5C_associated_SNPs_40449 0 0 0 0 2 PTCD2 chr5:71618091 5'GT 71618091 Upstream 83bp
chr11 63997020 63997020 1 + G A UCEC 63997000 + 63996980 63997020 41 GCACTACCTGAGTGGGGGACCCGAGGCCCACGAGTCTACAG GCACTACCTGAGTGGGGGACCCGAGGCCCACGAGTCTACAA < 41bp 1 0.442946484921878 1 0.903941631317139 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997000 chr11:63997020 nonsynonymous SNV 0.995 2 41 hm5C_associated_SNPs_40450 0 0 1 0 2 NUDT22 chr11:63996950 3'AG 63996950 Downstream 71bp
chr11 63997020 63997020 1 + G A UCEC 63997000 + 63996980 63997020 41 GCACTACCTGAGTGGGGGACCCGAGGCCCACGAGTCTACAG GCACTACCTGAGTGGGGGACCCGAGGCCCACGAGTCTACAA < 41bp 1 0.442946484921878 1 0.903941631317139 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997000 chr11:63997020 nonsynonymous SNV 0.995 2 41 hm5C_associated_SNPs_40450 0 0 1 0 2 NUDT22 chr11:63997043 5'GT 63997043 Upstream 24bp
chr19 34949762 34949762 1 + C T UCEC 34949745 + 34949725 34949765 41 GCACTGGATCCTCCCAACCCCAATTGTTATGTATGTGCCAG GCACTGGATCCTCCCAACCCCAATTGTTATGTATGTGTCAG < 41bp 1 0.302759449701807 1 0.0615058541297913 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBA2 ENSG00000126261 CDS Human protein_coding chr19:34949745 chr19:34949762 nonsynonymous SNV 0.999 2 38 hm5C_associated_SNPs_40451 0 0 1 0 2 UBA2 chr19:34949674 3'AG 34949674 Downstream 89bp
chr19 34949762 34949762 1 + C T UCEC 34949745 + 34949725 34949765 41 GCACTGGATCCTCCCAACCCCAATTGTTATGTATGTGCCAG GCACTGGATCCTCCCAACCCCAATTGTTATGTATGTGTCAG < 41bp 1 0.302759449701807 1 0.0615058541297913 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBA2 ENSG00000126261 CDS Human protein_coding chr19:34949745 chr19:34949762 nonsynonymous SNV 0.999 2 38 hm5C_associated_SNPs_40451 0 0 1 0 2 UBA2 chr19:34949829 5'GT 34949829 Upstream 68bp
chr19 13051182 13051182 1 + G T UCEC 13051171 + 13051151 13051191 41 TGGAAGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAG TGGAAGACGATTGGGACTTCCTGCCACCCAATAAGATAAAG < 41bp 1 0.380070262726152 1 0.334476470947266 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051171 chr19:13051182 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_40452 0 0 1 0 1 CALR chr19:13051266 5'GT 13051266 Upstream 85bp
chr19 13051182 13051182 1 + G T UCEC 13051175 + 13051155 13051195 41 AGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAGGATC AGACGATTGGGACTTCCTGCCACCCAATAAGATAAAGGATC < 41bp 1 0.330525988592263 1 0.236082434654236 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051175 chr19:13051182 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_40453 0 0 1 0 1 CALR chr19:13051266 5'GT 13051266 Upstream 85bp
chr7 102995365 102995365 1 + G T UCEC 102995366 + 102995346 102995386 41 AAGTTGAAGATGACATTCAGCAACTTCTCAAGAAAATTAAT AAGTTGAAGATGACATTCATCAACTTCTCAAGAAAATTAAT < 41bp 1 0.36773899557017 1 0.206171542406082 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMC2 ENSG00000161057 CDS Human protein_coding chr7:102995366 chr7:102995365 nonsynonymous SNV 0.993 3 20 hm5C_associated_SNPs_40454 0 0 1 0 1 PSMC2 chr7:102995396 5'GT 102995396 Upstream 32bp
chr19 46025457 46025457 1 + C T UCEC 46025465 + 46025445 46025485 41 GAGCACATAGAGCGCCGGGTCTCCAATGCAGGTGATGCTCA GAGCACATAGAGTGCCGGGTCTCCAATGCAGGTGATGCTCA < 41bp 1 0.752847486494706 1 0.899353981018066 experiment 0.494305027010588 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46025465 chr19:46025457 nonsynonymous SNV 0.864 3 13 hm5C_associated_SNPs_40455 0 0 1 0 2 VASP chr19:46025426 3'AG 46025426 Downstream 32bp
chr19 46025457 46025457 1 + C T UCEC 46025465 + 46025445 46025485 41 GAGCACATAGAGCGCCGGGTCTCCAATGCAGGTGATGCTCA GAGCACATAGAGTGCCGGGTCTCCAATGCAGGTGATGCTCA < 41bp 1 0.752847486494706 1 0.899353981018066 experiment 0.494305027010588 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46025465 chr19:46025457 nonsynonymous SNV 0.864 3 13 hm5C_associated_SNPs_40455 0 0 1 0 2 VASP chr19:46025475 5'GT 46025475 Upstream 19bp
chr19 46025457 46025457 1 + C T UCEC 46025467 + 46025447 46025487 41 GCACATAGAGCGCCGGGTCTCCAATGCAGGTGATGCTCAGA GCACATAGAGTGCCGGGTCTCCAATGCAGGTGATGCTCAGA < 41bp 1 0.217327105596368 1 0.657998204231262 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46025467 chr19:46025457 nonsynonymous SNV 0.864 3 11 hm5C_associated_SNPs_40456 0 0 1 0 2 VASP chr19:46025426 3'AG 46025426 Downstream 32bp
chr19 46025457 46025457 1 + C T UCEC 46025467 + 46025447 46025487 41 GCACATAGAGCGCCGGGTCTCCAATGCAGGTGATGCTCAGA GCACATAGAGTGCCGGGTCTCCAATGCAGGTGATGCTCAGA < 41bp 1 0.217327105596368 1 0.657998204231262 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46025467 chr19:46025457 nonsynonymous SNV 0.864 3 11 hm5C_associated_SNPs_40456 0 0 1 0 2 VASP chr19:46025475 5'GT 46025475 Upstream 19bp
chr19 46025457 46025457 1 + C T UCEC 46025468 + 46025448 46025488 41 CACATAGAGCGCCGGGTCTCCAATGCAGGTGATGCTCAGAT CACATAGAGTGCCGGGTCTCCAATGCAGGTGATGCTCAGAT < 41bp 1 0.297558469539324 1 0.295038133859634 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46025468 chr19:46025457 nonsynonymous SNV 0.864 3 10 hm5C_associated_SNPs_40457 0 0 1 0 2 VASP chr19:46025426 3'AG 46025426 Downstream 32bp
chr19 46025457 46025457 1 + C T UCEC 46025468 + 46025448 46025488 41 CACATAGAGCGCCGGGTCTCCAATGCAGGTGATGCTCAGAT CACATAGAGTGCCGGGTCTCCAATGCAGGTGATGCTCAGAT < 41bp 1 0.297558469539324 1 0.295038133859634 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46025468 chr19:46025457 nonsynonymous SNV 0.864 3 10 hm5C_associated_SNPs_40457 0 0 1 0 2 VASP chr19:46025475 5'GT 46025475 Upstream 19bp
chr1 7796548 7796548 1 + C A UCEC 7796544 + 7796524 7796564 41 TTCCGCGGAATGACCCTACTCCACCTGGCCGCTGCCCAGGG TTCCGCGGAATGACCCTACTCCACATGGCCGCTGCCCAGGG < 41bp 1 0.644925796533164 1 0.659603476524353 experiment 0.710148406933673 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMTA1 ENSG00000171735 CDS Human protein_coding chr1:7796544 chr1:7796548 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_40458 0 0 1 0 1 CAMTA1 chr1:7796600 5'GT 7796600 Upstream 53bp
chr2 242430976 242430976 1 + C T UCEC 242430986 + 242430966 242431006 41 GAAGATGATGCTCGGGGTGTCCGCAGCTCCCTGGAGGGGCA GAAGATGATGTTCGGGGTGTCCGCAGCTCCCTGGAGGGGCA < 41bp 1 0.642636508718022 1 0.395992994308472 experiment 0.714726982563957 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FARP2 ENSG00000006607 CDS Human protein_coding chr2:242430986 chr2:242430976 nonsynonymous SNV 0.002 0 11 hm5C_associated_SNPs_40459 0 0 0 0 1 FARP2 chr2:242430931 3'AG 242430931 Downstream 46bp
chr10 104160777 104160777 1 + C T UCEC 104160790 + 104160770 104160810 41 GGGTACCCGACCCTCACCCGCCTCCTTCTGAAGGCTGGTCA GGGTACCTGACCCTCACCCGCCTCCTTCTGAAGGCTGGTCA < 41bp 1 0.0590020246678362 1 0.122570902109146 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160790 chr10:104160777 nonsynonymous SNV 0.105 3 8 hm5C_associated_SNPs_40460 0 0 1 0 2 NFKB2 chr10:104160704 3'AG 104160704 Downstream 74bp
chr10 104160777 104160777 1 + C T UCEC 104160790 + 104160770 104160810 41 GGGTACCCGACCCTCACCCGCCTCCTTCTGAAGGCTGGTCA GGGTACCTGACCCTCACCCGCCTCCTTCTGAAGGCTGGTCA < 41bp 1 0.0590020246678362 1 0.122570902109146 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160790 chr10:104160777 nonsynonymous SNV 0.105 3 8 hm5C_associated_SNPs_40460 0 0 1 0 2 NFKB2 chr10:104160806 5'GT 104160806 Upstream 30bp
chr9 37486782 37486782 1 + G A UCEC 37486792 + 37486772 37486812 41 CCAACCCCAGGAAGAGGAATCAACGGATCCTGGTAAGTGAA CCAACCCCAGAAAGAGGAATCAACGGATCCTGGTAAGTGAA < 41bp 1 0.531228705325423 1 0.700987994670868 experiment 0.937542589349154 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1E ENSG00000137054 CDS Human protein_coding chr9:37486792 chr9:37486782 synonymous SNV . 0 11 hm5C_associated_SNPs_40461 0 0 1 0 2 POLR1E chr9:37486700 3'AG 37486700 Downstream 83bp
chr9 37486782 37486782 1 + G A UCEC 37486792 + 37486772 37486812 41 CCAACCCCAGGAAGAGGAATCAACGGATCCTGGTAAGTGAA CCAACCCCAGAAAGAGGAATCAACGGATCCTGGTAAGTGAA < 41bp 1 0.531228705325423 1 0.700987994670868 experiment 0.937542589349154 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1E ENSG00000137054 CDS Human protein_coding chr9:37486792 chr9:37486782 synonymous SNV . 0 11 hm5C_associated_SNPs_40461 0 0 1 0 2 POLR1E chr9:37486803 5'GT 37486803 Upstream 22bp
chr20 34458934 34458934 1 + G A UCEC 34458925 + 34458905 34458945 41 AAACACTGACAAAGACTTATCGAGGAGACGTTCCTCCAGGC AAACACTGACAAAGACTTATCGAGGAGACATTCCTCCAGGC < 41bp 1 0.78393722660342 1 0.966600716114044 experiment 0.43212554679316 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PHF20 ENSG00000025293 CDS Human protein_coding chr20:34458925 chr20:34458934 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_40465 0 0 1 0 1 PHF20 chr20:34458877 3'AG 34458877 Downstream 58bp
chr1 32626270 32626270 1 + G A UCEC 32626288 + 32626268 32626308 41 ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA ACATCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA < 41bp 1 0.151180807237093 1 0.515235185623169 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32626288 chr1:32626270 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_40466 0 0 1 0 3 KPNA6 chr1:32626216 3'AG 32626216 Downstream 55bp
chr1 32626270 32626270 1 + G A UCEC 32626288 + 32626268 32626308 41 ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA ACATCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA < 41bp 1 0.151180807237093 1 0.515235185623169 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32626288 chr1:32626270 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_40466 0 0 1 0 3 KPNA6 chr1:32626220 3'AG 32626220 Downstream 51bp
chr1 32626270 32626270 1 + G A UCEC 32626288 + 32626268 32626308 41 ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA ACATCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA < 41bp 1 0.151180807237093 1 0.515235185623169 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32626288 chr1:32626270 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_40466 0 0 1 0 3 KPNA6 chr1:32626304 5'GT 32626304 Upstream 35bp
chr6 160477510 160477510 1 + A G UCEC 160477524 + 160477504 160477544 41 CTGTGGAACACAGAGGCTGCCTGTCCCATTCAGACAACGAC CTGTGGGACACAGAGGCTGCCTGTCCCATTCAGACAACGAC < 41bp 1 0.0339478267160762 1 0.0927111208438873 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160477524 chr6:160477510 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_40467 0 0 1 0 2 IGF2R chr6:160477456 3'AG 160477456 Downstream 55bp
chr6 160477510 160477510 1 + A G UCEC 160477524 + 160477504 160477544 41 CTGTGGAACACAGAGGCTGCCTGTCCCATTCAGACAACGAC CTGTGGGACACAGAGGCTGCCTGTCCCATTCAGACAACGAC < 41bp 1 0.0339478267160762 1 0.0927111208438873 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160477524 chr6:160477510 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_40467 0 0 1 0 2 IGF2R chr6:160477557 5'GT 160477557 Upstream 48bp
chr17 48148791 48148791 1 + G A UCEC 48148790 + 48148770 48148810 41 TTGCTGAGCCAGGAGGCAGGCGGAGACCTGCGGAGGAGGCA TTGCTGAGCCAGGAGGCAGGCAGAGACCTGCGGAGGAGGCA < 41bp 1 0.467245714494234 1 0.784724652767181 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48148790 chr17:48148791 nonsynonymous SNV 0.901 1 22 hm5C_associated_SNPs_40468 0 0 0 0 1 ITGA3 chr17:48148882 5'GT 48148882 Upstream 92bp
chr7 101891775 101891775 1 + C T UCEC 101891755 + 101891735 101891775 41 GGGAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGC GGGAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGT < 41bp 1 0.592622786353463 1 0.725315749645233 experiment 0.814754427293074 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891755 chr7:101891775 nonsynonymous SNV 0.753 1 41 hm5C_associated_SNPs_40469 0 0 1 0 1 CUX1 chr7:101891692 3'AG 101891692 Downstream 84bp
chr7 101891775 101891775 1 + C T UCEC 101891757 + 101891737 101891777 41 GAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGCCC GAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGTCC < 41bp 1 0.323822489140076 1 0.615172863006592 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891757 chr7:101891775 nonsynonymous SNV 0.753 1 39 hm5C_associated_SNPs_40470 0 0 1 0 1 CUX1 chr7:101891692 3'AG 101891692 Downstream 84bp
chr7 101891775 101891775 1 + C T UCEC 101891758 + 101891738 101891778 41 AGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGCCCG AGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGTCCG < 41bp 1 0.652264352385818 1 0.738117098808289 experiment 0.695471295228363 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891758 chr7:101891775 nonsynonymous SNV 0.753 1 38 hm5C_associated_SNPs_40471 0 0 1 0 1 CUX1 chr7:101891692 3'AG 101891692 Downstream 84bp
chr19 16957826 16957826 1 + G A UCEC 16957840 + 16957820 16957860 41 ATGTCTGAAGAGGAGGTGTTCACCGAGGTGGCCAACCTCTT ATGTCTAAAGAGGAGGTGTTCACCGAGGTGGCCAACCTCTT < 41bp 1 0.626164992190361 1 0.0892076790332794 experiment 0.747670015619278 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SIN3B ENSG00000127511 CDS Human protein_coding chr19:16957840 chr19:16957826 nonsynonymous SNV 0.986 4 7 hm5C_associated_SNPs_40472 0 0 1 0 2 SIN3B chr19:16957781 3'AG 16957781 Downstream 46bp
chr19 16957826 16957826 1 + G A UCEC 16957840 + 16957820 16957860 41 ATGTCTGAAGAGGAGGTGTTCACCGAGGTGGCCAACCTCTT ATGTCTAAAGAGGAGGTGTTCACCGAGGTGGCCAACCTCTT < 41bp 1 0.626164992190361 1 0.0892076790332794 experiment 0.747670015619278 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SIN3B ENSG00000127511 CDS Human protein_coding chr19:16957840 chr19:16957826 nonsynonymous SNV 0.986 4 7 hm5C_associated_SNPs_40472 0 0 1 0 2 SIN3B chr19:16957924 5'GT 16957924 Upstream 99bp
chr17 73814847 73814847 1 + C T UCEC 73814827 + 73814807 73814847 41 CCTAGCCCAGTGGGCACCAGCAGCGTCCCCGGCATGAATGC CCTAGCCCAGTGGGCACCAGCAGCGTCCCCGGCATGAATGT < 41bp 1 0.686394906199335 1 0.435654550790787 experiment 0.627210187601331 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73814827 chr17:73814847 nonsynonymous SNV 0.999 1 41 hm5C_associated_SNPs_40473 0 0 0 0 1 UNK chr17:73814897 5'GT 73814897 Upstream 51bp
chr17 73814847 73814847 1 + C T UCEC 73814851 + 73814831 73814871 41 GTCCCCGGCATGAATGCAAACGCTCTGCCCTTCTACCCCAC GTCCCCGGCATGAATGTAAACGCTCTGCCCTTCTACCCCAC < 41bp 1 0.416269104005462 1 0.253687620162964 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73814851 chr17:73814847 nonsynonymous SNV 0.999 1 17 hm5C_associated_SNPs_40474 0 0 0 0 1 UNK chr17:73814897 5'GT 73814897 Upstream 51bp
chr12 31244706 31244706 1 + G A UCEC 31244687 + 31244667 31244707 41 CTATCAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGG CTATCAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCAG < 41bp 1 0.580839120111733 1 0.407399833202362 experiment 0.838321759776535 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244687 chr12:31244706 synonymous SNV . 0 40 hm5C_associated_SNPs_40475 0 0 1 0 2 DDX11 chr12:31244653 3'AG 31244653 Downstream 54bp
chr12 31244706 31244706 1 + G A UCEC 31244687 + 31244667 31244707 41 CTATCAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGG CTATCAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCAG < 41bp 1 0.580839120111733 1 0.407399833202362 experiment 0.838321759776535 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244687 chr12:31244706 synonymous SNV . 0 40 hm5C_associated_SNPs_40475 0 0 1 0 2 DDX11 chr12:31244805 5'GT 31244805 Upstream 100bp
chr12 31244706 31244706 1 + G A UCEC 31244691 + 31244671 31244711 41 CAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGGGCAT CAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCAGGCAT < 41bp 1 0.223781684703242 1 0.0879677832126617 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244691 chr12:31244706 synonymous SNV . 0 36 hm5C_associated_SNPs_40476 0 0 1 0 2 DDX11 chr12:31244653 3'AG 31244653 Downstream 54bp
chr12 31244706 31244706 1 + G A UCEC 31244691 + 31244671 31244711 41 CAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGGGCAT CAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCAGGCAT < 41bp 1 0.223781684703242 1 0.0879677832126617 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244691 chr12:31244706 synonymous SNV . 0 36 hm5C_associated_SNPs_40476 0 0 1 0 2 DDX11 chr12:31244805 5'GT 31244805 Upstream 100bp
chr11 67818122 67818122 1 + G A UCEC 67818104 + 67818084 67818124 41 GGTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGC GGTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCAGC < 41bp 1 0.0353409385244024 1 0.530366957187653 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818104 chr11:67818122 nonsynonymous SNV 0.985 5 39 hm5C_associated_SNPs_40477 0 0 1 0 2 TCIRG1 chr11:67818131 5'GT 67818131 Upstream 10bp
chr11 67818122 67818122 1 + G A UCEC 67818104 + 67818084 67818124 41 GGTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGC GGTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCAGC < 41bp 1 0.0353409385244024 1 0.530366957187653 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818104 chr11:67818122 nonsynonymous SNV 0.985 5 39 hm5C_associated_SNPs_40477 0 0 1 0 2 TCIRG1 chr11:67818208 5'GT 67818208 Upstream 87bp
chr11 67818122 67818122 1 + G A UCEC 67818105 + 67818085 67818125 41 GTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGCT GTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCAGCT < 41bp 1 0.140801121905097 1 0.572798311710358 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818105 chr11:67818122 nonsynonymous SNV 0.985 5 38 hm5C_associated_SNPs_40478 0 0 1 0 2 TCIRG1 chr11:67818131 5'GT 67818131 Upstream 10bp
chr11 67818122 67818122 1 + G A UCEC 67818105 + 67818085 67818125 41 GTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGCT GTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCAGCT < 41bp 1 0.140801121905097 1 0.572798311710358 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818105 chr11:67818122 nonsynonymous SNV 0.985 5 38 hm5C_associated_SNPs_40478 0 0 1 0 2 TCIRG1 chr11:67818208 5'GT 67818208 Upstream 87bp
chr16 57486784 57486784 1 + C T UCEC 57486774 + 57486754 57486794 41 GTGAGGAGCAGTTGCAGCACCGCATCCTGACGGCAGCCCTT GTGAGGAGCAGTTGCAGCACCGCATCCTGATGGCAGCCCTT < 41bp 1 0.567949702770871 1 0.835696697235107 experiment 0.864100594458259 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57486774 chr16:57486784 nonsynonymous SNV 0.992 2 31 hm5C_associated_SNPs_40479 0 0 1 0 2 COQ9 chr16:57486713 3'AG 57486713 Downstream 72bp
chr16 57486784 57486784 1 + C T UCEC 57486774 + 57486754 57486794 41 GTGAGGAGCAGTTGCAGCACCGCATCCTGACGGCAGCCCTT GTGAGGAGCAGTTGCAGCACCGCATCCTGATGGCAGCCCTT < 41bp 1 0.567949702770871 1 0.835696697235107 experiment 0.864100594458259 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57486774 chr16:57486784 nonsynonymous SNV 0.992 2 31 hm5C_associated_SNPs_40479 0 0 1 0 2 COQ9 chr16:57486848 5'GT 57486848 Upstream 65bp
chr16 16228273 16228273 1 + G A UCEC 16228293 + 16228273 16228313 41 GAGTCTGCCGAAGGAGAGATCATCATCGATGGCATCAACAT AAGTCTGCCGAAGGAGAGATCATCATCGATGGCATCAACAT < 41bp 1 0.309688603530286 1 0.0479081571102142 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16228293 chr16:16228273 nonsynonymous SNV 0.232 4 1 hm5C_associated_SNPs_40481 0 0 1 0 2 ABCC1 chr16:16228207 3'AG 16228207 Downstream 67bp
chr16 16228273 16228273 1 + G A UCEC 16228293 + 16228273 16228313 41 GAGTCTGCCGAAGGAGAGATCATCATCGATGGCATCAACAT AAGTCTGCCGAAGGAGAGATCATCATCGATGGCATCAACAT < 41bp 1 0.309688603530286 1 0.0479081571102142 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16228293 chr16:16228273 nonsynonymous SNV 0.232 4 1 hm5C_associated_SNPs_40481 0 0 1 0 2 ABCC1 chr16:16228365 5'GT 16228365 Upstream 93bp
chr8 37630316 37630316 1 + G A UCEC 37630300 + 37630280 37630320 41 CAATCTCTTCATGCTGGAAACAGTGGATTCTGTGAAGTTGG CAATCTCTTCATGCTGGAAACAGTGGATTCTGTGAAATTGG < 41bp 1 0.38974052829615 1 0.36532798409462 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLPBP ENSG00000147471 CDS Human protein_coding chr8:37630300 chr8:37630316 synonymous SNV . 0 37 hm5C_associated_SNPs_40482 0 0 1 0 1 PLPBP chr8:37630273 3'AG 37630273 Downstream 44bp
chr2 27663359 27663359 1 + G T UCEC 27663350 + 27663330 27663370 41 TGGCTGAAATCCCTGCAGGACCAGGAAGAGAACCAGTTCAG TGGCTGAAATCCCTGCAGGACCAGGAAGATAACCAGTTCAG < 41bp 1 0.297396112177935 1 0.373118698596954 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663350 chr2:27663359 stopgain 1.000 1 30 hm5C_associated_SNPs_40483 0 0 1 0 2 NRBP1 chr2:27663270 3'AG 27663270 Downstream 90bp
chr2 27663359 27663359 1 + G T UCEC 27663350 + 27663330 27663370 41 TGGCTGAAATCCCTGCAGGACCAGGAAGAGAACCAGTTCAG TGGCTGAAATCCCTGCAGGACCAGGAAGATAACCAGTTCAG < 41bp 1 0.297396112177935 1 0.373118698596954 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663350 chr2:27663359 stopgain 1.000 1 30 hm5C_associated_SNPs_40483 0 0 1 0 2 NRBP1 chr2:27663375 5'GT 27663375 Upstream 17bp
chr19 48259044 48259044 1 + A C UCEC 48259063 + 48259043 48259083 41 GAGCTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGGTGC GCGCTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGGTGC < 41bp 1 0.288162272718929 1 0.0391319394111633 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259063 chr19:48259044 nonsynonymous SNV 0.912 2 2 hm5C_associated_SNPs_40484 0 0 1 0 2 NOP53 chr19:48259013 3'AG 48259013 Downstream 32bp
chr19 48259044 48259044 1 + A C UCEC 48259063 + 48259043 48259083 41 GAGCTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGGTGC GCGCTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGGTGC < 41bp 1 0.288162272718929 1 0.0391319394111633 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259063 chr19:48259044 nonsynonymous SNV 0.912 2 2 hm5C_associated_SNPs_40484 0 0 1 0 2 NOP53 chr19:48259079 5'GT 48259079 Upstream 36bp
chr2 224824286 224824286 1 + T C UCEC 224824275 + 224824255 224824295 41 GAGAAGCCGAACTGGGATTACCATGCAGAAATACAAGCTTT GAGAAGCCGAACTGGGATTACCATGCAGAAACACAAGCTTT < 41bp 1 0.144846422359802 1 0.11884731054306 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224824275 chr2:224824286 nonsynonymous SNV 0.992 1 32 hm5C_associated_SNPs_40485 0 0 1 0 1 MRPL44 chr2:224824251 3'AG 224824251 Downstream 36bp
chr14 75190034 75190034 1 + C T UCEC 75190025 + 75190005 75190045 41 CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTCTA CTGAAATTGAGAAATTGGGGCAGAAGTATTGAGTGGCTCTA < 41bp 1 0.691330869318754 1 0.318928927183151 experiment 0.617338261362493 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCF1 ENSG00000119616 CDS Human protein_coding chr14:75190025 chr14:75190034 stopgain 0.996 1 30 hm5C_associated_SNPs_40486 0 0 1 1 2 FCF1 chr14:75189975 3'AG 75189975 Downstream 60bp
chr14 75190034 75190034 1 + C T UCEC 75190025 + 75190005 75190045 41 CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTCTA CTGAAATTGAGAAATTGGGGCAGAAGTATTGAGTGGCTCTA < 41bp 1 0.691330869318754 1 0.318928927183151 experiment 0.617338261362493 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCF1 ENSG00000119616 CDS Human protein_coding chr14:75190025 chr14:75190034 stopgain 0.996 1 30 hm5C_associated_SNPs_40486 0 0 1 1 2 FCF1 chr14:75190047 5'GT 75190047 Upstream 14bp
chr3 48506023 48506023 1 + C A UCEC 48506024 + 48506004 48506044 41 TGGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACT TGGTGTGCAGAGCCCCTTGACCCCAGTCACTGGCTCCAACT < 41bp 1 0.435559684230533 1 0.146697968244553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506024 chr3:48506023 nonsynonymous SNV 0.133 0 20 hm5C_associated_SNPs_40487 0 0 1 0 2 ATRIP chr3:48505981 3'AG 48505981 Downstream 43bp
chr3 48506023 48506023 1 + C A UCEC 48506024 + 48506004 48506044 41 TGGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACT TGGTGTGCAGAGCCCCTTGACCCCAGTCACTGGCTCCAACT < 41bp 1 0.435559684230533 1 0.146697968244553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506024 chr3:48506023 nonsynonymous SNV 0.133 0 20 hm5C_associated_SNPs_40487 0 0 1 0 2 ATRIP chr3:48506061 5'GT 48506061 Upstream 39bp
chr3 48506023 48506023 1 + C A UCEC 48506025 + 48506005 48506045 41 GGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTG GGTGTGCAGAGCCCCTTGACCCCAGTCACTGGCTCCAACTG < 41bp 1 0.320997948071216 1 0.0562755763530731 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506025 chr3:48506023 nonsynonymous SNV 0.133 0 19 hm5C_associated_SNPs_40488 0 0 1 0 2 ATRIP chr3:48505981 3'AG 48505981 Downstream 43bp
chr3 48506023 48506023 1 + C A UCEC 48506025 + 48506005 48506045 41 GGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTG GGTGTGCAGAGCCCCTTGACCCCAGTCACTGGCTCCAACTG < 41bp 1 0.320997948071216 1 0.0562755763530731 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506025 chr3:48506023 nonsynonymous SNV 0.133 0 19 hm5C_associated_SNPs_40488 0 0 1 0 2 ATRIP chr3:48506061 5'GT 48506061 Upstream 39bp
chr3 48506023 48506023 1 + C A UCEC 48506026 + 48506006 48506046 41 GTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGC GTGTGCAGAGCCCCTTGACCCCAGTCACTGGCTCCAACTGC < 41bp 1 0.372121591132674 1 0.128726005554199 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506026 chr3:48506023 nonsynonymous SNV 0.133 0 18 hm5C_associated_SNPs_40489 0 0 1 0 2 ATRIP chr3:48505981 3'AG 48505981 Downstream 43bp
chr3 48506023 48506023 1 + C A UCEC 48506026 + 48506006 48506046 41 GTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGC GTGTGCAGAGCCCCTTGACCCCAGTCACTGGCTCCAACTGC < 41bp 1 0.372121591132674 1 0.128726005554199 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506026 chr3:48506023 nonsynonymous SNV 0.133 0 18 hm5C_associated_SNPs_40489 0 0 1 0 2 ATRIP chr3:48506061 5'GT 48506061 Upstream 39bp
chr3 48506023 48506023 1 + C A UCEC 48506027 + 48506007 48506047 41 TGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGCC TGTGCAGAGCCCCTTGACCCCAGTCACTGGCTCCAACTGCC < 41bp 1 0.27574128557978 1 0.106598377227783 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506027 chr3:48506023 nonsynonymous SNV 0.133 0 17 hm5C_associated_SNPs_40490 0 0 1 0 2 ATRIP chr3:48505981 3'AG 48505981 Downstream 43bp
chr3 48506023 48506023 1 + C A UCEC 48506027 + 48506007 48506047 41 TGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGCC TGTGCAGAGCCCCTTGACCCCAGTCACTGGCTCCAACTGCC < 41bp 1 0.27574128557978 1 0.106598377227783 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506027 chr3:48506023 nonsynonymous SNV 0.133 0 17 hm5C_associated_SNPs_40490 0 0 1 0 2 ATRIP chr3:48506061 5'GT 48506061 Upstream 39bp
chr11 61584162 61584162 1 + G A UCEC 61584155 + 61584135 61584175 41 CTCGCACCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGT CTCGCACCCTGAGCGCTGGGCCACCTCATCCCAGGTGAAGT < 41bp 1 0.0293820694260447 1 0.0584134459495544 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584155 chr11:61584162 synonymous SNV . 0 28 hm5C_associated_SNPs_40491 0 0 0 0 1 FADS1;FADS2 chr11:61584168 5'GT 61584168 Upstream 7bp
chr11 61584162 61584162 1 + G A UCEC 61584156 + 61584136 61584176 41 TCGCACCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTA TCGCACCCTGAGCGCTGGGCCACCTCATCCCAGGTGAAGTA < 41bp 1 0.218830199057035 1 0.0825475454330444 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584156 chr11:61584162 synonymous SNV . 0 27 hm5C_associated_SNPs_40492 0 0 0 0 1 FADS1;FADS2 chr11:61584168 5'GT 61584168 Upstream 7bp
chr11 61584162 61584162 1 + G A UCEC 61584158 + 61584138 61584178 41 GCACCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGC GCACCCTGAGCGCTGGGCCACCTCATCCCAGGTGAAGTAGC < 41bp 1 0.139046299240566 1 0.034492552280426 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584158 chr11:61584162 synonymous SNV . 0 25 hm5C_associated_SNPs_40493 0 0 0 0 1 FADS1;FADS2 chr11:61584168 5'GT 61584168 Upstream 7bp
chr11 61584162 61584162 1 + G A UCEC 61584159 + 61584139 61584179 41 CACCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGCG CACCCTGAGCGCTGGGCCACCTCATCCCAGGTGAAGTAGCG < 41bp 1 0.19769848762832 1 0.100741505622864 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584159 chr11:61584162 synonymous SNV . 0 24 hm5C_associated_SNPs_40494 0 0 0 0 1 FADS1;FADS2 chr11:61584168 5'GT 61584168 Upstream 7bp
chr11 61584162 61584162 1 + G A UCEC 61584161 + 61584141 61584181 41 CCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGCGCG CCCTGAGCGCTGGGCCACCTCATCCCAGGTGAAGTAGCGCG < 41bp 1 0.218345947098715 1 0.226583749055862 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584161 chr11:61584162 synonymous SNV . 0 22 hm5C_associated_SNPs_40495 0 0 0 0 1 FADS1;FADS2 chr11:61584168 5'GT 61584168 Upstream 7bp
chr11 61584162 61584162 1 + G A UCEC 61584164 + 61584144 61584184 41 TGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGCGCGGGG TGAGCGCTGGGCCACCTCATCCCAGGTGAAGTAGCGCGGGG < 41bp 1 0.528033303202863 1 0.747684121131897 experiment 0.943933393594273 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584164 chr11:61584162 synonymous SNV . 0 19 hm5C_associated_SNPs_40496 0 0 0 0 1 FADS1;FADS2 chr11:61584168 5'GT 61584168 Upstream 7bp
chr11 61584162 61584162 1 + G A UCEC 61584165 + 61584145 61584185 41 GAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGCGCGGGGT GAGCGCTGGGCCACCTCATCCCAGGTGAAGTAGCGCGGGGT < 41bp 1 0.527763850798784 1 0.850486397743225 experiment 0.944472298402431 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584165 chr11:61584162 synonymous SNV . 0 18 hm5C_associated_SNPs_40497 0 0 0 0 1 FADS1;FADS2 chr11:61584168 5'GT 61584168 Upstream 7bp
chrX 40996133 40996133 1 + T C UCEC 40996126 + 40996106 40996146 41 AGTTGTCCCAAGACTGGTTTCCACTTTTAGAACTTCTTGCC AGTTGTCCCAAGACTGGTTTCCACTTTCAGAACTTCTTGCC < 41bp 1 0.144684363359488 1 0.246008932590485 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:40996126 chrX:40996133 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_40498 0 0 1 0 1 USP9X chrX:40996057 3'AG 40996057 Downstream 77bp
chr10 43971249 43971249 1 + G A UCEC 43971248 + 43971228 43971268 41 GGACTCTGCTCAGAGGACCCCGTACAGAGACATGATGCTGG GGACTCTGCTCAGAGGACCCCATACAGAGACATGATGCTGG < 41bp 1 0.366721963264375 1 0.173018515110016 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF487 ENSG00000243660 CDS Human protein_coding chr10:43971248 chr10:43971249 synonymous SNV . 0 22 hm5C_associated_SNPs_40499 0 0 0 0 2 ZNF487 chr10:43971169 3'AG 43971169 Downstream 81bp
chr10 43971249 43971249 1 + G A UCEC 43971248 + 43971228 43971268 41 GGACTCTGCTCAGAGGACCCCGTACAGAGACATGATGCTGG GGACTCTGCTCAGAGGACCCCATACAGAGACATGATGCTGG < 41bp 1 0.366721963264375 1 0.173018515110016 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF487 ENSG00000243660 CDS Human protein_coding chr10:43971248 chr10:43971249 synonymous SNV . 0 22 hm5C_associated_SNPs_40499 0 0 0 0 2 ZNF487 chr10:43971295 5'GT 43971295 Upstream 47bp
chr5 72182956 72182956 1 + C T UCEC 72182950 + 72182930 72182970 41 CAAATGTGTATCGTGATGAACTGCTGCCACATATTTTGCCC CAAATGTGTATCGTGATGAACTGCTGTCACATATTTTGCCC < 41bp 1 0.539658534960911 1 0.0916528701782227 experiment 0.920682930078179 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72182950 chr5:72182956 nonsynonymous SNV 0.932 2 27 hm5C_associated_SNPs_40501 0 0 1 0 2 TNPO1 chr5:72182897 3'AG 72182897 Downstream 60bp
chr5 72182956 72182956 1 + C T UCEC 72182950 + 72182930 72182970 41 CAAATGTGTATCGTGATGAACTGCTGCCACATATTTTGCCC CAAATGTGTATCGTGATGAACTGCTGTCACATATTTTGCCC < 41bp 1 0.539658534960911 1 0.0916528701782227 experiment 0.920682930078179 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72182950 chr5:72182956 nonsynonymous SNV 0.932 2 27 hm5C_associated_SNPs_40501 0 0 1 0 2 TNPO1 chr5:72183049 5'GT 72183049 Upstream 94bp
chr11 125475564 125475564 1 + G A UCEC 125475549 + 125475529 125475569 41 GCCATCTTTTGCATGCTACTCACCTACTACATGTGGATCAA GCCATCTTTTGCATGCTACTCACCTACTACATGTGAATCAA < 41bp 1 0.601276761122491 1 0.210974663496017 experiment 0.797446477755018 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STT3A ENSG00000134910 CDS Human protein_coding chr11:125475549 chr11:125475564 stopgain 1.000 1 36 hm5C_associated_SNPs_40502 0 0 1 0 2 STT3A chr11:125475524 3'AG 125475524 Downstream 41bp
chr11 125475564 125475564 1 + G A UCEC 125475549 + 125475529 125475569 41 GCCATCTTTTGCATGCTACTCACCTACTACATGTGGATCAA GCCATCTTTTGCATGCTACTCACCTACTACATGTGAATCAA < 41bp 1 0.601276761122491 1 0.210974663496017 experiment 0.797446477755018 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STT3A ENSG00000134910 CDS Human protein_coding chr11:125475549 chr11:125475564 stopgain 1.000 1 36 hm5C_associated_SNPs_40502 0 0 1 0 2 STT3A chr11:125475630 5'GT 125475630 Upstream 67bp
chr11 65826383 65826383 1 + G A UCEC 65826372 + 65826352 65826392 41 CGAGGGGTGTCCTCTGAGAGCTCTGGGGACCGGGAGAAAGA CGAGGGGTGTCCTCTGAGAGCTCTGGGGACCAGGAGAAAGA < 41bp 1 0.498826931849463 1 0.292611747980118 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65826372 chr11:65826383 nonsynonymous SNV 0.993 0 32 hm5C_associated_SNPs_40503 0 0 1 0 1 SF3B2 chr11:65826301 3'AG 65826301 Downstream 83bp
chr11 65826383 65826383 1 + G A UCEC 65826381 + 65826361 65826401 41 TCCTCTGAGAGCTCTGGGGACCGGGAGAAAGACTCAACCCG TCCTCTGAGAGCTCTGGGGACCAGGAGAAAGACTCAACCCG < 41bp 1 0.44740257677714 1 0.408260345458984 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65826381 chr11:65826383 nonsynonymous SNV 0.993 0 23 hm5C_associated_SNPs_40504 0 0 1 0 1 SF3B2 chr11:65826301 3'AG 65826301 Downstream 83bp
chrX 131202536 131202536 1 + T G UCEC 131202534 + 131202514 131202554 41 ACACAGATTAAAAGAAATACCTTTGTGGGAACTCCATTTTG ACACAGATTAAAAGAAATACCTGTGTGGGAACTCCATTTTG < 41bp 1 0.695114965206778 1 0.0476967096328735 experiment 0.609770069586444 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STK26 ENSG00000134602 CDS Human protein_coding chrX:131202534 chrX:131202536 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_40505 0 0 1 0 2 STK26 chrX:131202440 3'AG 131202440 Downstream 97bp
chrX 131202536 131202536 1 + T G UCEC 131202534 + 131202514 131202554 41 ACACAGATTAAAAGAAATACCTTTGTGGGAACTCCATTTTG ACACAGATTAAAAGAAATACCTGTGTGGGAACTCCATTTTG < 41bp 1 0.695114965206778 1 0.0476967096328735 experiment 0.609770069586444 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STK26 ENSG00000134602 CDS Human protein_coding chrX:131202534 chrX:131202536 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_40505 0 0 1 0 2 STK26 chrX:131202597 5'GT 131202597 Upstream 62bp
chr10 89474575 89474575 1 + A G UCEC 89474562 + 89474542 89474582 41 TCCTGAGCGTGTGCTTAAAACCAATTTGTCCACAGTGAGTG TCCTGAGCGTGTGCTTAAAACCAATTTGTCCACGGTGAGTG < 41bp 1 0.27819363088571 1 0.0625183284282684 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89474562 chr10:89474575 synonymous SNV . 0 34 hm5C_associated_SNPs_40506 0 0 1 0 2 PAPSS2 chr10:89474502 3'AG 89474502 Downstream 74bp
chr10 89474575 89474575 1 + A G UCEC 89474562 + 89474542 89474582 41 TCCTGAGCGTGTGCTTAAAACCAATTTGTCCACAGTGAGTG TCCTGAGCGTGTGCTTAAAACCAATTTGTCCACGGTGAGTG < 41bp 1 0.27819363088571 1 0.0625183284282684 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89474562 chr10:89474575 synonymous SNV . 0 34 hm5C_associated_SNPs_40506 0 0 1 0 2 PAPSS2 chr10:89474620 5'GT 89474620 Upstream 46bp
chr19 7911551 7911551 1 + C T UCEC 7911531 + 7911511 7911551 41 AGAACCTCAGCCCCGATGAGCTGGAGCTGCTGGCCAAGCTC AGAACCTCAGCCCCGATGAGCTGGAGCTGCTGGCCAAGCTT < 41bp 1 0.727880276235666 1 0.748694121837616 experiment 0.544239447528668 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EVI5L ENSG00000142459 CDS Human protein_coding chr19:7911531 chr19:7911551 synonymous SNV . 0 41 hm5C_associated_SNPs_40507 0 0 0 0 1 EVI5L chr19:7911565 5'GT 7911565 Upstream 15bp
chr1 163306613 163306613 1 + C T UCEC 163306605 + 163306585 163306625 41 ATTCACTTCAGAGAAGCATGCCGTGAAACGTATATGGAATT ATTCACTTCAGAGAAGCATGCCGTGAAATGTATATGGAATT < 41bp 1 0.147031419747301 1 0.251870214939117 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUF2 ENSG00000143228 CDS Human protein_coding chr1:163306605 chr1:163306613 nonsynonymous SNV 0.949 2 29 hm5C_associated_SNPs_40508 0 0 1 0 2 NUF2 chr1:163306541 3'AG 163306541 Downstream 73bp
chr1 163306613 163306613 1 + C T UCEC 163306605 + 163306585 163306625 41 ATTCACTTCAGAGAAGCATGCCGTGAAACGTATATGGAATT ATTCACTTCAGAGAAGCATGCCGTGAAATGTATATGGAATT < 41bp 1 0.147031419747301 1 0.251870214939117 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUF2 ENSG00000143228 CDS Human protein_coding chr1:163306605 chr1:163306613 nonsynonymous SNV 0.949 2 29 hm5C_associated_SNPs_40508 0 0 1 0 2 NUF2 chr1:163306638 5'GT 163306638 Upstream 26bp
chr17 1648483 1648483 1 + C T UCEC 1648475 + 1648455 1648495 41 CCCTTTCTCCACAGTTCTCCCCTGTGAGCGCCATGGAGCCC CCCTTTCTCCACAGTTCTCCCCTGTGAGTGCCATGGAGCCC < 41bp 1 0.131333673839482 1 0.0387519299983978 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1648475 chr17:1648483 synonymous SNV . 0 29 hm5C_associated_SNPs_40509 0 0 1 0 2 SERPINF2 chr17:1648469 3'AG 1648469 Downstream 15bp
chr17 1648483 1648483 1 + C T UCEC 1648475 + 1648455 1648495 41 CCCTTTCTCCACAGTTCTCCCCTGTGAGCGCCATGGAGCCC CCCTTTCTCCACAGTTCTCCCCTGTGAGTGCCATGGAGCCC < 41bp 1 0.131333673839482 1 0.0387519299983978 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1648475 chr17:1648483 synonymous SNV . 0 29 hm5C_associated_SNPs_40509 0 0 1 0 2 SERPINF2 chr17:1648507 5'GT 1648507 Upstream 25bp
chr8 143816758 143816758 1 + G A UCEC 143816777 + 143816757 143816797 41 AGCTGCCCGCTGATCTGCAGCACTGGATCTCCTACAACGAG AACTGCCCGCTGATCTGCAGCACTGGATCTCCTACAACGAG < 41bp 1 0.235357841596828 1 0.152596145868301 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THEM6 ENSG00000130193 CDS Human protein_coding chr8:143816777 chr8:143816758 nonsynonymous SNV . 0 2 hm5C_associated_SNPs_40510 0 0 1 0 1 THEM6 chr8:143816744 3'AG 143816744 Downstream 15bp
chr5 176468188 176468188 1 + C A UCEC 176468185 + 176468165 176468205 41 AACACCCAGTGTAAGGTTTGCTGCGCCTTGCTTATTTCTGA AACACCCAGTGTAAGGTTTGCTGAGCCTTGCTTATTTCTGA < 41bp 1 0.419575102276875 1 0.10033392906189 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF346 ENSG00000113761 CDS Human protein_coding chr5:176468185 chr5:176468188 stopgain 0.966 1 24 hm5C_associated_SNPs_40511 0 0 1 0 2 ZNF346 chr5:176468127 3'AG 176468127 Downstream 62bp
chr5 176468188 176468188 1 + C A UCEC 176468185 + 176468165 176468205 41 AACACCCAGTGTAAGGTTTGCTGCGCCTTGCTTATTTCTGA AACACCCAGTGTAAGGTTTGCTGAGCCTTGCTTATTTCTGA < 41bp 1 0.419575102276875 1 0.10033392906189 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF346 ENSG00000113761 CDS Human protein_coding chr5:176468185 chr5:176468188 stopgain 0.966 1 24 hm5C_associated_SNPs_40511 0 0 1 0 2 ZNF346 chr5:176468230 5'GT 176468230 Upstream 43bp
chrX 47030522 47030522 1 + C T UCEC 47030525 + 47030505 47030545 41 CCAGGCTTCCCCCGAGACGGCGACTATCGGGACCAGGACTA CCAGGCTTCCCCCGAGATGGCGACTATCGGGACCAGGACTA < 41bp 1 0.6214891055193 1 0.283570945262909 experiment 0.757021788961399 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030525 chrX:47030522 synonymous SNV . 0 18 hm5C_associated_SNPs_40513 0 0 1 0 2 RBM10 chrX:47030427 3'AG 47030427 Downstream 96bp
chrX 47030522 47030522 1 + C T UCEC 47030525 + 47030505 47030545 41 CCAGGCTTCCCCCGAGACGGCGACTATCGGGACCAGGACTA CCAGGCTTCCCCCGAGATGGCGACTATCGGGACCAGGACTA < 41bp 1 0.6214891055193 1 0.283570945262909 experiment 0.757021788961399 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030525 chrX:47030522 synonymous SNV . 0 18 hm5C_associated_SNPs_40513 0 0 1 0 2 RBM10 chrX:47030509 3'AG 47030509 Downstream 14bp
chr10 134981013 134981013 1 + C T UCEC 134980995 + 134980975 134981015 41 TCCATGCGGAGCGTGGCCCACGCCGCCATCTTCCAGAGCCT TCCATGCGGAGCGTGGCCCACGCCGCCATCTTCCAGAGTCT < 41bp 1 0.401024124076063 1 0.238197922706604 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KNDC1 ENSG00000171798 CDS Human protein_coding chr10:134980995 chr10:134981013 synonymous SNV . 0 39 hm5C_associated_SNPs_40514 0 0 0 0 1 KNDC1 chr10:134981083 5'GT 134981083 Upstream 71bp
chr6 43395797 43395797 1 + C T UCEC 43395795 + 43395775 43395815 41 GGGAGGGGGACACCACAGGCCACTGCTTCACCCAGCTGGTG GGGAGGGGGACACCACAGGCCATTGCTTCACCCAGCTGGTG < 41bp 1 0.166391389475093 1 0.0719229280948639 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43395795 chr6:43395797 synonymous SNV . 0 23 hm5C_associated_SNPs_40519 0 0 0 0 2 ABCC10 chr6:43395706 3'AG 43395706 Downstream 92bp
chr6 43395797 43395797 1 + C T UCEC 43395795 + 43395775 43395815 41 GGGAGGGGGACACCACAGGCCACTGCTTCACCCAGCTGGTG GGGAGGGGGACACCACAGGCCATTGCTTCACCCAGCTGGTG < 41bp 1 0.166391389475093 1 0.0719229280948639 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43395795 chr6:43395797 synonymous SNV . 0 23 hm5C_associated_SNPs_40519 0 0 0 0 2 ABCC10 chr6:43395877 5'GT 43395877 Upstream 81bp
chr7 151818000 151818000 1 + C T UCEC 151818003 + 151817983 151818023 41 CTCGCTCATCAGACCCGCCACGGCTCATGAAATGCCACGGG CTCGCTCATCAGACCCGTCACGGCTCATGAAATGCCACGGG < 41bp 1 0.537722418914095 1 0.406164079904556 experiment 0.92455516217181 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151818003 chr7:151818000 nonsynonymous SNV 0.974 4 18 hm5C_associated_SNPs_40521 0 0 1 0 2 GALNT11 chr7:151817916 3'AG 151817916 Downstream 85bp
chr7 151818000 151818000 1 + C T UCEC 151818003 + 151817983 151818023 41 CTCGCTCATCAGACCCGCCACGGCTCATGAAATGCCACGGG CTCGCTCATCAGACCCGTCACGGCTCATGAAATGCCACGGG < 41bp 1 0.537722418914095 1 0.406164079904556 experiment 0.92455516217181 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151818003 chr7:151818000 nonsynonymous SNV 0.974 4 18 hm5C_associated_SNPs_40521 0 0 1 0 2 GALNT11 chr7:151818053 5'GT 151818053 Upstream 54bp
chr7 66703393 66703393 1 + C T UCEC 66703395 + 66703375 66703415 41 TGGATCAAAAACGTTCAGCGCAAAGGATTATATGGCCAGAA TGGATCAAAAACGTTCAGTGCAAAGGATTATATGGCCAGAA < 41bp 1 0.354345384357555 1 0.109589666128159 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66703395 chr7:66703393 synonymous SNV . 0 19 hm5C_associated_SNPs_40523 0 0 0 0 1 TYW1 chr7:66703295 3'AG 66703295 Downstream 99bp
chr15 99673013 99673013 1 + G A UCEC 99673023 + 99673003 99673043 41 GGAGCTCTCGGTGTGTCTGACCGTGGTTCCTGGAGAGACGC GGAGCTCTCGATGTGTCTGACCGTGGTTCCTGGAGAGACGC < 41bp 1 0.229597514100491 1 0.0487443804740906 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99673023 chr15:99673013 nonsynonymous SNV 0.002 1 11 hm5C_associated_SNPs_40524 0 0 1 0 1 SYNM chr15:99672955 3'AG 99672955 Downstream 59bp
chr12 53495884 53495884 1 + G A UCEC 53495902 + 53495882 53495922 41 GGGCAAGTCCCTGCCAGGGTCTCCAGATGGCAATGGAAGCT GGACAAGTCCCTGCCAGGGTCTCCAGATGGCAATGGAAGCT < 41bp 1 0.763678949869632 1 0.90258663892746 experiment 0.472642100260735 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IGFBP6 ENSG00000167779 CDS Human protein_coding chr12:53495902 chr12:53495884 nonsynonymous SNV 0.998 5 3 hm5C_associated_SNPs_40525 0 0 0 0 1 IGFBP6 chr12:53495829 3'AG 53495829 Downstream 56bp
chr20 60882672 60882672 1 + C T UCEC 60882662 + 60882642 60882682 41 CTCTTCGCAGCTCCCGGAGCCAGTCGGCAGCGGTCACCCCG CTCTTCGCAGCTCCCGGAGCCAGTCGGCAGTGGTCACCCCG < 41bp 1 0.278598634030778 1 0.566186249256134 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882662 chr20:60882672 nonsynonymous SNV 0.837 1 31 hm5C_associated_SNPs_40526 0 0 1 0 1 ADRM1 chr20:60882652 3'AG 60882652 Downstream 21bp
chr1 155106005 155106005 1 + C T UCEC 155106004 + 155105984 155106024 41 CCCATCCACCAGCATGAAGACCGCTGCTTGAGGTTGAAGGT CCCATCCACCAGCATGAAGACTGCTGCTTGAGGTTGAAGGT < 41bp 1 0.393152699033394 1 0.240842342376709 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNA1 ENSG00000169242 CDS Human protein_coding chr1:155106004 chr1:155106005 nonsynonymous SNV 0.899 2 22 hm5C_associated_SNPs_40528 0 0 1 0 2 EFNA1 chr1:155105979 3'AG 155105979 Downstream 27bp
chr1 155106005 155106005 1 + C T UCEC 155106004 + 155105984 155106024 41 CCCATCCACCAGCATGAAGACCGCTGCTTGAGGTTGAAGGT CCCATCCACCAGCATGAAGACTGCTGCTTGAGGTTGAAGGT < 41bp 1 0.393152699033394 1 0.240842342376709 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNA1 ENSG00000169242 CDS Human protein_coding chr1:155106004 chr1:155106005 nonsynonymous SNV 0.899 2 22 hm5C_associated_SNPs_40528 0 0 1 0 2 EFNA1 chr1:155106044 5'GT 155106044 Upstream 40bp
chr19 4323379 4323379 1 + A T UCEC 4323383 + 4323363 4323403 41 ATGCCCGCACCAAACAAGTGCTGCACACTTTCAAGACCAGG ATGCCCGCACCAAACATGTGCTGCACACTTTCAAGACCAGG < 41bp 1 0.370017120236558 1 0.125342160463333 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FSD1 ENSG00000105255 CDS Human protein_coding chr19:4323383 chr19:4323379 nonsynonymous SNV 0.653 2 17 hm5C_associated_SNPs_40529 0 0 1 0 2 FSD1 chr19:4323345 3'AG 4323345 Downstream 35bp
chr19 4323379 4323379 1 + A T UCEC 4323383 + 4323363 4323403 41 ATGCCCGCACCAAACAAGTGCTGCACACTTTCAAGACCAGG ATGCCCGCACCAAACATGTGCTGCACACTTTCAAGACCAGG < 41bp 1 0.370017120236558 1 0.125342160463333 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FSD1 ENSG00000105255 CDS Human protein_coding chr19:4323383 chr19:4323379 nonsynonymous SNV 0.653 2 17 hm5C_associated_SNPs_40529 0 0 1 0 2 FSD1 chr19:4323433 5'GT 4323433 Upstream 55bp
chr9 139752163 139752163 1 + G A UCEC 139752175 + 139752155 139752195 41 GGCCAGACGGCCTCCCTGACCTCCAAGGAGCACAGGCCCCT GGCCAGACAGCCTCCCTGACCTCCAAGGAGCACAGGCCCCT < 41bp 1 0.788749556254943 1 0.834015369415283 experiment 0.422500887490113 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139752175 chr9:139752163 synonymous SNV . 0 9 hm5C_associated_SNPs_40530 0 0 1 0 2 MAMDC4 chr9:139752111 3'AG 139752111 Downstream 53bp
chr9 139752163 139752163 1 + G A UCEC 139752175 + 139752155 139752195 41 GGCCAGACGGCCTCCCTGACCTCCAAGGAGCACAGGCCCCT GGCCAGACAGCCTCCCTGACCTCCAAGGAGCACAGGCCCCT < 41bp 1 0.788749556254943 1 0.834015369415283 experiment 0.422500887490113 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139752175 chr9:139752163 synonymous SNV . 0 9 hm5C_associated_SNPs_40530 0 0 1 0 2 MAMDC4 chr9:139752248 5'GT 139752248 Upstream 86bp
chr13 113729374 113729374 1 + C A UCEC 113729386 + 113729366 113729406 41 AACAAGCACTACGCGGTAGACTCCATCCGCCCAAAGTGCCA AACAAGCAATACGCGGTAGACTCCATCCGCCCAAAGTGCCA < 41bp 1 0.682304289774442 1 0.90852278470993 experiment 0.635391420451115 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113729386 chr13:113729374 nonsynonymous SNV 0.805 4 9 hm5C_associated_SNPs_40534 0 0 1 0 1 MCF2L chr13:113729312 3'AG 113729312 Downstream 63bp
chr17 46189986 46189986 1 + C A UCEC 46189985 + 46189965 46190005 41 CCGAGTGCAGAATGAGGGCTCCTGGAACTCTTATGTGGATT CCGAGTGCAGAATGAGGGCTCATGGAACTCTTATGTGGATT < 41bp 1 0.326981322980603 1 0.150201082229614 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX11 ENSG00000002919 CDS Human protein_coding chr17:46189985 chr17:46189986 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_40535 0 0 1 0 2 SNX11 chr17:46189936 3'AG 46189936 Downstream 51bp
chr17 46189986 46189986 1 + C A UCEC 46189985 + 46189965 46190005 41 CCGAGTGCAGAATGAGGGCTCCTGGAACTCTTATGTGGATT CCGAGTGCAGAATGAGGGCTCATGGAACTCTTATGTGGATT < 41bp 1 0.326981322980603 1 0.150201082229614 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX11 ENSG00000002919 CDS Human protein_coding chr17:46189985 chr17:46189986 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_40535 0 0 1 0 2 SNX11 chr17:46190022 5'GT 46190022 Upstream 37bp
chr16 722999 722999 1 + G A UCEC 723004 + 722984 723024 41 GCCCGAAGGTGTCGCGGTGTCTGGCCCATCACCGGCCGAGT GCCCGAAGGTGTCGCAGTGTCTGGCCCATCACCGGCCGAGT < 41bp 1 0.715877119235058 1 0.317327499389648 experiment 0.568245761529884 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:723004 chr16:722999 synonymous SNV . 0 16 hm5C_associated_SNPs_40536 0 0 1 0 1 RHOT2 chr16:722928 3'AG 722928 Downstream 72bp
chr1 44058258 44058258 1 + G A UCEC 44058240 + 44058220 44058260 41 TATGGGGGTGGGCGTCTTCACCCCCACCATTGAGGCCCGCA TATGGGGGTGGGCGTCTTCACCCCCACCATTGAGGCCCACA < 41bp 1 0.143604892434497 1 0.0921421349048615 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44058240 chr1:44058258 nonsynonymous SNV 0.998 3 39 hm5C_associated_SNPs_40537 0 0 1 0 1 PTPRF chr1:44058272 5'GT 44058272 Upstream 15bp
chr6 33243795 33243795 1 + C T UCEC 33243783 + 33243763 33243803 41 ATGCAGAATCCACGCCAGTACAAGATCCCAGACTGGTTCTT ATGCAGAATCCACGCCAGTACAAGATCCCAGATTGGTTCTT < 41bp 1 0.795001039437471 1 0.159480303525925 experiment 0.409997921125058 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243783 chr6:33243795 synonymous SNV . 0 33 hm5C_associated_SNPs_40538 0 0 1 0 2 RPS18 chr6:33243742 3'AG 33243742 Downstream 54bp
chr6 33243795 33243795 1 + C T UCEC 33243783 + 33243763 33243803 41 ATGCAGAATCCACGCCAGTACAAGATCCCAGACTGGTTCTT ATGCAGAATCCACGCCAGTACAAGATCCCAGATTGGTTCTT < 41bp 1 0.795001039437471 1 0.159480303525925 experiment 0.409997921125058 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243783 chr6:33243795 synonymous SNV . 0 33 hm5C_associated_SNPs_40538 0 0 1 0 2 RPS18 chr6:33243843 5'GT 33243843 Upstream 49bp
chr14 24646064 24646064 1 + C T UCEC 24646055 + 24646035 24646075 41 GATTCCGGTCACTGTGCTGCCACCTGAGGCCATCACGATCC GATTCCGGTCACTGTGCTGCCACCTGAGGTCATCACGATCC < 41bp 1 0.571620290562792 1 0.115216910839081 experiment 0.856759418874417 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control REC8 ENSG00000100918 CDS Human protein_coding chr14:24646055 chr14:24646064 nonsynonymous SNV 0.189 0 30 hm5C_associated_SNPs_40539 0 0 1 0 2 REC8 chr14:24646031 3'AG 24646031 Downstream 34bp
chr14 24646064 24646064 1 + C T UCEC 24646055 + 24646035 24646075 41 GATTCCGGTCACTGTGCTGCCACCTGAGGCCATCACGATCC GATTCCGGTCACTGTGCTGCCACCTGAGGTCATCACGATCC < 41bp 1 0.571620290562792 1 0.115216910839081 experiment 0.856759418874417 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control REC8 ENSG00000100918 CDS Human protein_coding chr14:24646055 chr14:24646064 nonsynonymous SNV 0.189 0 30 hm5C_associated_SNPs_40539 0 0 1 0 2 REC8 chr14:24646110 5'GT 24646110 Upstream 47bp
chr6 74475660 74475660 1 + T C UCEC 74475665 + 74475645 74475685 41 ACCATTAGGTGAAGGTAACTCGTGCTGATGGCAACCAACTG ACCATTAGGTGAAGGCAACTCGTGCTGATGGCAACCAACTG < 41bp 1 0.267017554055755 1 0.474704176187515 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD109 ENSG00000156535 CDS Human protein_coding chr6:74475665 chr6:74475660 nonsynonymous SNV 0.974 2 16 hm5C_associated_SNPs_40540 0 0 0 0 1 CD109 chr6:74475653 3'AG 74475653 Downstream 8bp
chr2 238666106 238666106 1 + G A UCEC 238666104 + 238666084 238666124 41 TGTTCCTTTCCTCAGGAAATCCGACAGCTACAGCAGAAACA TGTTCCTTTCCTCAGGAAATCCAACAGCTACAGCAGAAACA < 41bp 1 0.017330678361593 1 0.196132719516754 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238666104 chr2:238666106 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_40541 0 0 0 0 2 LRRFIP1 chr2:238666099 3'AG 238666099 Downstream 8bp
chr2 238666106 238666106 1 + G A UCEC 238666104 + 238666084 238666124 41 TGTTCCTTTCCTCAGGAAATCCGACAGCTACAGCAGAAACA TGTTCCTTTCCTCAGGAAATCCAACAGCTACAGCAGAAACA < 41bp 1 0.017330678361593 1 0.196132719516754 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238666104 chr2:238666106 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_40541 0 0 0 0 2 LRRFIP1 chr2:238666191 5'GT 238666191 Upstream 86bp
chr17 38610261 38610261 1 + T C UCEC 38610248 + 38610228 38610268 41 GCCGCTTCACAGAGCCGCACCCACGAGGACCTCTACATCAT GCCGCTTCACAGAGCCGCACCCACGAGGACCTCCACATCAT < 41bp 1 0.332124496018242 1 0.111516296863556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38610248 chr17:38610261 nonsynonymous SNV 0.999 1 34 hm5C_associated_SNPs_40542 0 0 1 0 2 IGFBP4 chr17:38610180 3'AG 38610180 Downstream 82bp
chr17 38610261 38610261 1 + T C UCEC 38610248 + 38610228 38610268 41 GCCGCTTCACAGAGCCGCACCCACGAGGACCTCTACATCAT GCCGCTTCACAGAGCCGCACCCACGAGGACCTCCACATCAT < 41bp 1 0.332124496018242 1 0.111516296863556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38610248 chr17:38610261 nonsynonymous SNV 0.999 1 34 hm5C_associated_SNPs_40542 0 0 1 0 2 IGFBP4 chr17:38610314 5'GT 38610314 Upstream 54bp
chr11 65780813 65780813 1 + T G UCEC 65780832 + 65780812 65780852 41 CTTGTGGTTCCCTGGCAGAACTCCTCTCAGCTCCTAAAGCA CGTGTGGTTCCCTGGCAGAACTCCTCTCAGCTCCTAAAGCA < 41bp 1 0.422668546331714 1 0.158261805772781 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CST6 ENSG00000175315 CDS Human protein_coding chr11:65780832 chr11:65780813 nonsynonymous SNV 0.407 3 2 hm5C_associated_SNPs_40543 0 0 0 0 1 CST6 chr11:65780788 3'AG 65780788 Downstream 26bp
chr10 31812932 31812932 1 + G A UCEC 31812931 + 31812911 31812951 41 GAATGACTCTGATTCTACACCGCCCAAAAAGAAAATGCGGA GAATGACTCTGATTCTACACCACCCAAAAAGAAAATGCGGA < 41bp 1 0.210106762717115 1 0.155161619186401 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZEB1 ENSG00000148516 CDS Human protein_coding chr10:31812931 chr10:31812932 synonymous SNV . 0 22 hm5C_associated_SNPs_40544 0 0 0 0 1 ZEB1 chr10:31812861 3'AG 31812861 Downstream 72bp
chr5 137735600 137735600 1 + T C UCEC 137735614 + 137735594 137735634 41 GTGATGTGTGTGAAACAACTCTCTTCAACATCCACTGGGTT GTGATGCGTGTGAAACAACTCTCTTCAACATCCACTGGGTT < 41bp 1 0.138618304849949 1 0.0794868171215057 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM3B ENSG00000120733 CDS Human protein_coding chr5:137735614 chr5:137735600 nonsynonymous SNV 0.995 1 7 hm5C_associated_SNPs_40547 0 0 1 0 1 KDM3B chr5:137735549 3'AG 137735549 Downstream 52bp
chr1 144014041 144014041 1 + C A UCEC 144014050 + 144014030 144014070 41 ACCTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGC ACCTGGAGAAGATGGCAGAACGCTTCCTGGCCAAGACATGC < 41bp 1 0.160981091075633 1 0.146836847066879 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014050 chr1:144014041 . 0.784 2 12 hm5C_associated_SNPs_40548 0 0 1 0 1 FAM72C;NBPF20 chr1:144014093 5'GT 144014093 Upstream 53bp
chr1 144014041 144014041 1 + C A UCEC 144014052 + 144014032 144014072 41 CTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGCAG CTGGAGAAGATGGCAGAACGCTTCCTGGCCAAGACATGCAG < 41bp 1 0.215410607446465 1 0.368061393499374 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014052 chr1:144014041 . 0.784 2 10 hm5C_associated_SNPs_40549 0 0 1 0 1 FAM72C;NBPF20 chr1:144014093 5'GT 144014093 Upstream 53bp
chr9 100412787 100412787 1 + T C UCEC 100412789 + 100412769 100412809 41 TTGGTTTTCTTTCCAGGGTCCTGTCATGCCAGGGAGTCATT TTGGTTTTCTTTCCAGGGCCCTGTCATGCCAGGGAGTCATT < 41bp 1 0.0698898036873288 1 0.103167623281479 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100412789 chr9:100412787 synonymous SNV . 0 19 hm5C_associated_SNPs_40550 0 0 0 0 1 NCBP1 chr9:100412882 5'GT 100412882 Upstream 96bp
chr17 40842211 40842211 1 + A G UCEC 40842212 + 40842192 40842232 41 CTGAAGCCATTTGTAGTGTACTGTGATATCCGAGGTAAGTG CTGAAGCCATTTGTAGTGTGCTGTGATATCCGAGGTAAGTG < 41bp 1 0.19460196315874 1 0.0823725461959839 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40842212 chr17:40842211 nonsynonymous SNV 0.999 3 20 hm5C_associated_SNPs_40552 0 0 1 0 1 CNTNAP1 chr17:40842225 5'GT 40842225 Upstream 15bp
chr16 67671681 67671681 1 + C T UCEC 67671677 + 67671657 67671697 41 AAAAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAG AAAAAGAGCCAGATGCTGAGCCCGTAGAGGGAGAGGAAGAG < 41bp 1 0.299900865032832 1 0.109221398830414 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671677 chr16:67671681 nonsynonymous SNV 0.099 0 25 hm5C_associated_SNPs_40553 0 0 1 0 2 CTCF chr16:67671591 3'AG 67671591 Downstream 91bp
chr16 67671681 67671681 1 + C T UCEC 67671677 + 67671657 67671697 41 AAAAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAG AAAAAGAGCCAGATGCTGAGCCCGTAGAGGGAGAGGAAGAG < 41bp 1 0.299900865032832 1 0.109221398830414 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671677 chr16:67671681 nonsynonymous SNV 0.099 0 25 hm5C_associated_SNPs_40553 0 0 1 0 2 CTCF chr16:67671597 3'AG 67671597 Downstream 85bp
chr16 67671681 67671681 1 + C T UCEC 67671678 + 67671658 67671698 41 AAAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGG AAAAGAGCCAGATGCTGAGCCCGTAGAGGGAGAGGAAGAGG < 41bp 1 0.364585139161399 1 0.295470535755157 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671678 chr16:67671681 nonsynonymous SNV 0.099 0 24 hm5C_associated_SNPs_40554 0 0 1 0 2 CTCF chr16:67671591 3'AG 67671591 Downstream 91bp
chr16 67671681 67671681 1 + C T UCEC 67671678 + 67671658 67671698 41 AAAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGG AAAAGAGCCAGATGCTGAGCCCGTAGAGGGAGAGGAAGAGG < 41bp 1 0.364585139161399 1 0.295470535755157 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671678 chr16:67671681 nonsynonymous SNV 0.099 0 24 hm5C_associated_SNPs_40554 0 0 1 0 2 CTCF chr16:67671597 3'AG 67671597 Downstream 85bp
chr16 67671681 67671681 1 + C T UCEC 67671679 + 67671659 67671699 41 AAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGGA AAAGAGCCAGATGCTGAGCCCGTAGAGGGAGAGGAAGAGGA < 41bp 1 0.22657942647362 1 0.344040960073471 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671679 chr16:67671681 nonsynonymous SNV 0.099 0 23 hm5C_associated_SNPs_40555 0 0 1 0 2 CTCF chr16:67671591 3'AG 67671591 Downstream 91bp
chr16 67671681 67671681 1 + C T UCEC 67671679 + 67671659 67671699 41 AAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGGA AAAGAGCCAGATGCTGAGCCCGTAGAGGGAGAGGAAGAGGA < 41bp 1 0.22657942647362 1 0.344040960073471 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671679 chr16:67671681 nonsynonymous SNV 0.099 0 23 hm5C_associated_SNPs_40555 0 0 1 0 2 CTCF chr16:67671597 3'AG 67671597 Downstream 85bp
chrX 69353952 69353952 1 + C T UCEC 69353956 + 69353936 69353976 41 GACCTCCTTGAGAAGGCTGCCGAAATGTTATCGCAGCTCGA GACCTCCTTGAGAAGGTTGCCGAAATGTTATCGCAGCTCGA < 41bp 1 0.573878048977264 1 0.745540738105774 experiment 0.852243902045472 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69353956 chrX:69353952 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_40556 0 0 1 0 1 IGBP1 chrX:69353985 5'GT 69353985 Upstream 34bp
chrX 69353952 69353952 1 + C T UCEC 69353969 + 69353949 69353989 41 AGGCTGCCGAAATGTTATCGCAGCTCGACTTGTTCAGGTAT AGGTTGCCGAAATGTTATCGCAGCTCGACTTGTTCAGGTAT < 41bp 1 0.351502743504178 1 0.742224156856537 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69353969 chrX:69353952 nonsynonymous SNV 1.000 0 4 hm5C_associated_SNPs_40557 0 0 1 0 1 IGBP1 chrX:69353985 5'GT 69353985 Upstream 34bp
chr2 100011283 100011283 1 + A G UCEC 100011282 + 100011262 100011302 41 TTAGTGCAGAAATTATTTATCATTTATTTGATGCCTTTACA TTAGTGCAGAAATTATTTATCGTTTATTTGATGCCTTTACA < 41bp 1 0.1073945988817 1 0.0676544308662415 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:100011282 chr2:100011283 nonsynonymous SNV 0.996 0 22 hm5C_associated_SNPs_40567 0 0 1 0 1 EIF5B chr2:100011346 5'GT 100011346 Upstream 64bp
chr11 988585 988585 1 + G A UCEC 988594 + 988574 988614 41 GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGCGACCGC GGCAGCGGGCCATGGACCTCCTCTACGCCATGTGCGACCGC < 41bp 1 0.649928516862655 1 0.470606505870819 experiment 0.70014296627469 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:988594 chr11:988585 nonsynonymous SNV 0.998 3 12 hm5C_associated_SNPs_40568 0 0 1 0 1 AP2A2 chr11:988552 3'AG 988552 Downstream 34bp
chr15 75644697 75644697 1 + C T UCEC 75644692 + 75644672 75644712 41 ATCCCCCCCTTTGAGAAGGCCCGCTCGGTCCTGGAGGCCCT ATCCCCCCCTTTGAGAAGGCCCGCTTGGTCCTGGAGGCCCT < 41bp 1 0.18797100098879 1 0.0640021860599518 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NEIL1 ENSG00000140398 CDS Human protein_coding chr15:75644692 chr15:75644697 nonsynonymous SNV 0.085 0 26 hm5C_associated_SNPs_40570 0 0 1 0 2 NEIL1 chr15:75644665 3'AG 75644665 Downstream 33bp
chr15 75644697 75644697 1 + C T UCEC 75644692 + 75644672 75644712 41 ATCCCCCCCTTTGAGAAGGCCCGCTCGGTCCTGGAGGCCCT ATCCCCCCCTTTGAGAAGGCCCGCTTGGTCCTGGAGGCCCT < 41bp 1 0.18797100098879 1 0.0640021860599518 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NEIL1 ENSG00000140398 CDS Human protein_coding chr15:75644692 chr15:75644697 nonsynonymous SNV 0.085 0 26 hm5C_associated_SNPs_40570 0 0 1 0 2 NEIL1 chr15:75644728 5'GT 75644728 Upstream 32bp
chr2 27280284 27280284 1 + A G UCEC 27280287 + 27280267 27280307 41 GGCTTTCCCCTCCAGATACACTGTGGAACTATTTGAGCAGG GGCTTTCCCCTCCAGATGCACTGTGGAACTATTTGAGCAGG < 41bp 1 0.458769878316777 1 0.286044180393219 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27280287 chr2:27280284 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_40571 0 0 1 1 1 AGBL5 chr2:27280306 5'GT 27280306 Upstream 23bp
chr8 38899558 38899558 1 + T C UCEC 38899577 + 38899557 38899597 41 CTGATGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTG CCGATGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTG < 41bp 1 0.0990950190241354 1 0.0832454264163971 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38899577 chr8:38899558 synonymous SNV . 0 2 hm5C_associated_SNPs_40576 0 0 0 0 2 ADAM9 chr8:38899465 3'AG 38899465 Downstream 94bp
chr8 38899558 38899558 1 + T C UCEC 38899577 + 38899557 38899597 41 CTGATGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTG CCGATGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTG < 41bp 1 0.0990950190241354 1 0.0832454264163971 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38899577 chr8:38899558 synonymous SNV . 0 2 hm5C_associated_SNPs_40576 0 0 0 0 2 ADAM9 chr8:38899636 5'GT 38899636 Upstream 79bp
chr4 1332372 1332372 1 + G A UCEC 1332384 + 1332364 1332404 41 CCGCCCATGATGCTGCCCAACGGCTACGTCTACGGCTACAA CCGCCCATAATGCTGCCCAACGGCTACGTCTACGGCTACAA < 41bp 1 0.551527424783228 1 0.355048000812531 experiment 0.896945150433545 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAEA ENSG00000090316 CDS Human protein_coding chr4:1332384 chr4:1332372 nonsynonymous SNV 0.999 4 9 hm5C_associated_SNPs_40577 0 0 1 3 1 MAEA chr4:1332405 5'GT 1332405 Upstream 34bp
chrX 107097921 107097921 1 + G A UCEC 107097904 + 107097884 107097924 41 GAACTAGAAAATCAAATGGCCAAACTAATACAGATCTGCCA GAACTAGAAAATCAAATGGCCAAACTAATACAGATCTACCA < 41bp 1 0.115218095442961 1 0.185314923524857 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MID2 ENSG00000080561 CDS Human protein_coding chrX:107097904 chrX:107097921 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_40579 0 0 0 0 2 MID2 chrX:107097839 3'AG 107097839 Downstream 83bp
chrX 107097921 107097921 1 + G A UCEC 107097904 + 107097884 107097924 41 GAACTAGAAAATCAAATGGCCAAACTAATACAGATCTGCCA GAACTAGAAAATCAAATGGCCAAACTAATACAGATCTACCA < 41bp 1 0.115218095442961 1 0.185314923524857 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MID2 ENSG00000080561 CDS Human protein_coding chrX:107097904 chrX:107097921 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_40579 0 0 0 0 2 MID2 chrX:107097934 5'GT 107097934 Upstream 14bp
chr3 49713554 49713554 1 + C T UCEC 49713571 + 49713551 49713591 41 AAGCGCCCCAAGGCCGAGTCCTTCTTTCAGACCAAAGCCTT AAGTGCCCCAAGGCCGAGTCCTTCTTTCAGACCAAAGCCTT < 41bp 1 0.201842229822531 1 0.0651889443397522 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49713571 chr3:49713554 nonsynonymous SNV 0.999 3 4 hm5C_associated_SNPs_40580 0 0 1 0 2 APEH chr3:49713489 3'AG 49713489 Downstream 66bp
chr3 49713554 49713554 1 + C T UCEC 49713571 + 49713551 49713591 41 AAGCGCCCCAAGGCCGAGTCCTTCTTTCAGACCAAAGCCTT AAGTGCCCCAAGGCCGAGTCCTTCTTTCAGACCAAAGCCTT < 41bp 1 0.201842229822531 1 0.0651889443397522 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49713571 chr3:49713554 nonsynonymous SNV 0.999 3 4 hm5C_associated_SNPs_40580 0 0 1 0 2 APEH chr3:49713652 5'GT 49713652 Upstream 99bp
chr22 24560489 24560489 1 + T C UCEC 24560499 + 24560479 24560519 41 AGCACCCTGCTGAAGGTGTCCTCCATGCTTCAGCGGACCCC AGCACCCTGCCGAAGGTGTCCTCCATGCTTCAGCGGACCCC < 41bp 1 0.74942565456935 1 0.919059872627258 experiment 0.501148690861299 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24560499 chr22:24560489 nonsynonymous SNV 0.998 3 11 hm5C_associated_SNPs_40582 0 0 0 0 1 CABIN1 chr22:24560531 5'GT 24560531 Upstream 43bp
chr10 3155616 3155616 1 + A G UCEC 3155619 + 3155599 3155639 41 ACCCGCGGCTGGGATGAACGCAGCCGTACGCTCAGCTGTGC ACCCGCGGCTGGGATGAGCGCAGCCGTACGCTCAGCTGTGC < 41bp 1 0.632247274150753 1 0.642803072929382 experiment 0.735505451698494 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKP ENSG00000067057 CDS Human protein_coding chr10:3155619 chr10:3155616 nonsynonymous SNV 0.150 5 18 hm5C_associated_SNPs_40583 0 0 1 0 1 PFKP chr10:3155710 5'GT 3155710 Upstream 95bp
chr18 13096262 13096262 1 + G A UCEC 13096273 + 13096253 13096293 41 CTGGCCAGCGCATTGCCTCACAGTCACGCCGCAGCATGGAT CTGGCCAGCACATTGCCTCACAGTCACGCCGCAGCATGGAT < 41bp 1 0.0900927207829036 1 0.0883151590824127 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13096273 chr18:13096262 synonymous SNV . 0 10 hm5C_associated_SNPs_40584 0 0 1 1 1 CEP192 chr18:13096183 3'AG 13096183 Downstream 80bp
chr19 36104800 36104800 1 + C A UCEC 36104795 + 36104775 36104815 41 TCAAGAAGATCCGGGGAAACCTACTCTGGTAACTGCTTCTT TCAAGAAGATCCGGGGAAACCTACTATGGTAACTGCTTCTT < 41bp 1 0.579722130679038 1 0.131654798984528 experiment 0.840555738641924 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HAUS5 ENSG00000249115 CDS Human protein_coding chr19:36104795 chr19:36104800 synonymous SNV . 0 26 hm5C_associated_SNPs_40585 0 0 1 0 2 HAUS5 chr19:36104770 3'AG 36104770 Downstream 31bp
chr19 36104800 36104800 1 + C A UCEC 36104795 + 36104775 36104815 41 TCAAGAAGATCCGGGGAAACCTACTCTGGTAACTGCTTCTT TCAAGAAGATCCGGGGAAACCTACTATGGTAACTGCTTCTT < 41bp 1 0.579722130679038 1 0.131654798984528 experiment 0.840555738641924 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HAUS5 ENSG00000249115 CDS Human protein_coding chr19:36104795 chr19:36104800 synonymous SNV . 0 26 hm5C_associated_SNPs_40585 0 0 1 0 2 HAUS5 chr19:36104802 5'GT 36104802 Upstream 3bp
chr1 192779343 192779343 1 + C A UCEC 192779358 + 192779338 192779378 41 TTCCTCTACTCCTGGGAAGCCCAAAACCGGCAAAAAAAGCA TTCCTATACTCCTGGGAAGCCCAAAACCGGCAAAAAAAGCA < 41bp 1 0.305023595152215 1 0.547304928302765 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RGS2 ENSG00000116741 CDS Human protein_coding chr1:192779358 chr1:192779343 nonsynonymous SNV 0.966 1 6 hm5C_associated_SNPs_40586 0 0 1 0 2 RGS2 chr1:192779296 3'AG 192779296 Downstream 48bp
chr1 192779343 192779343 1 + C A UCEC 192779358 + 192779338 192779378 41 TTCCTCTACTCCTGGGAAGCCCAAAACCGGCAAAAAAAGCA TTCCTATACTCCTGGGAAGCCCAAAACCGGCAAAAAAAGCA < 41bp 1 0.305023595152215 1 0.547304928302765 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RGS2 ENSG00000116741 CDS Human protein_coding chr1:192779358 chr1:192779343 nonsynonymous SNV 0.966 1 6 hm5C_associated_SNPs_40586 0 0 1 0 2 RGS2 chr1:192779397 5'GT 192779397 Upstream 55bp
chr7 142460370 142460370 1 + C T UCEC 142460352 + 142460332 142460372 41 GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGTAA < 41bp 1 0.335228694715649 1 0.427706062793732 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460352 chr7:142460370 synonymous SNV . 0 39 hm5C_associated_SNPs_40587 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 89bp
chr7 142460370 142460370 1 + C T UCEC 142460352 + 142460332 142460372 41 GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGTAA < 41bp 1 0.335228694715649 1 0.427706062793732 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460352 chr7:142460370 synonymous SNV . 0 39 hm5C_associated_SNPs_40587 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 49bp
chr7 142460370 142460370 1 + C T UCEC 142460353 + 142460333 142460373 41 CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGTAAC < 41bp 1 0.272121717828678 1 0.571173012256622 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460353 chr7:142460370 synonymous SNV . 0 38 hm5C_associated_SNPs_40588 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 89bp
chr7 142460370 142460370 1 + C T UCEC 142460353 + 142460333 142460373 41 CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGTAAC < 41bp 1 0.272121717828678 1 0.571173012256622 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460353 chr7:142460370 synonymous SNV . 0 38 hm5C_associated_SNPs_40588 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 49bp
chr7 142460370 142460370 1 + C T UCEC 142460354 + 142460334 142460374 41 TAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAACA TAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGTAACA < 41bp 1 0.749770711575961 1 0.442794740200043 experiment 0.500458576848077 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460354 chr7:142460370 synonymous SNV . 0 37 hm5C_associated_SNPs_40589 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 89bp
chr7 142460370 142460370 1 + C T UCEC 142460354 + 142460334 142460374 41 TAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAACA TAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGTAACA < 41bp 1 0.749770711575961 1 0.442794740200043 experiment 0.500458576848077 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460354 chr7:142460370 synonymous SNV . 0 37 hm5C_associated_SNPs_40589 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 49bp
chr7 142460370 142460370 1 + C T UCEC 142460366 + 142460346 142460386 41 CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG CTCCTACCCTGGAAAGATTACCAGTAACATGTTCTGTGTGG < 41bp 1 0.220710981481371 1 0.115656614303589 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460366 chr7:142460370 synonymous SNV . 0 25 hm5C_associated_SNPs_40590 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 89bp
chr7 142460370 142460370 1 + C T UCEC 142460366 + 142460346 142460386 41 CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG CTCCTACCCTGGAAAGATTACCAGTAACATGTTCTGTGTGG < 41bp 1 0.220710981481371 1 0.115656614303589 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460366 chr7:142460370 synonymous SNV . 0 25 hm5C_associated_SNPs_40590 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 49bp
chr7 142460370 142460370 1 + C T UCEC 142460367 + 142460347 142460387 41 TCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG TCCTACCCTGGAAAGATTACCAGTAACATGTTCTGTGTGGG < 41bp 1 0.428975957392973 1 0.710056900978088 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460367 chr7:142460370 synonymous SNV . 0 24 hm5C_associated_SNPs_40591 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 89bp
chr7 142460370 142460370 1 + C T UCEC 142460367 + 142460347 142460387 41 TCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG TCCTACCCTGGAAAGATTACCAGTAACATGTTCTGTGTGGG < 41bp 1 0.428975957392973 1 0.710056900978088 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460367 chr7:142460370 synonymous SNV . 0 24 hm5C_associated_SNPs_40591 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 49bp
chr7 142460370 142460370 1 + C T UCEC 142460373 + 142460353 142460393 41 CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT CCTGGAAAGATTACCAGTAACATGTTCTGTGTGGGCTTCCT < 41bp 1 0.307643511668382 1 0.0847977995872498 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460373 chr7:142460370 synonymous SNV . 0 18 hm5C_associated_SNPs_40592 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 89bp
chr7 142460370 142460370 1 + C T UCEC 142460373 + 142460353 142460393 41 CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT CCTGGAAAGATTACCAGTAACATGTTCTGTGTGGGCTTCCT < 41bp 1 0.307643511668382 1 0.0847977995872498 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460373 chr7:142460370 synonymous SNV . 0 18 hm5C_associated_SNPs_40592 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 49bp
chr7 142460370 142460370 1 + C T UCEC 142460379 + 142460359 142460399 41 AAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG AAGATTACCAGTAACATGTTCTGTGTGGGCTTCCTTGAGGG < 41bp 1 0.286605357280029 1 0.337920784950256 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460379 chr7:142460370 synonymous SNV . 0 12 hm5C_associated_SNPs_40593 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 89bp
chr7 142460370 142460370 1 + C T UCEC 142460379 + 142460359 142460399 41 AAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG AAGATTACCAGTAACATGTTCTGTGTGGGCTTCCTTGAGGG < 41bp 1 0.286605357280029 1 0.337920784950256 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460379 chr7:142460370 synonymous SNV . 0 12 hm5C_associated_SNPs_40593 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 49bp
chr7 142460370 142460370 1 + C T UCEC 142460388 + 142460368 142460408 41 AGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA AGTAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA < 41bp 1 0.160002948029366 1 0.134979903697968 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460388 chr7:142460370 synonymous SNV . 0 3 hm5C_associated_SNPs_40594 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 89bp
chr7 142460370 142460370 1 + C T UCEC 142460388 + 142460368 142460408 41 AGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA AGTAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA < 41bp 1 0.160002948029366 1 0.134979903697968 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460388 chr7:142460370 synonymous SNV . 0 3 hm5C_associated_SNPs_40594 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 49bp
chr15 93528733 93528733 1 + G T UCEC 93528742 + 93528722 93528762 41 TCTCAGGCTCAGACAAATGACAGTGACTCTGACACTGAGTC TCTCAGGCTCATACAAATGACAGTGACTCTGACACTGAGTC < 41bp 1 0.190668131044737 1 0.0355815589427948 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93528742 chr15:93528733 nonsynonymous SNV 1.000 0 12 hm5C_associated_SNPs_40597 0 0 1 0 1 CHD2 chr15:93528728 3'AG 93528728 Downstream 6bp
chr3 50614568 50614568 1 + G A UCEC 50614550 + 50614530 50614570 41 TGTGGGATCCCCAGGCAGCCCCCTCATTCTGGAGGTGGGCT TGTGGGATCCCCAGGCAGCCCCCTCATTCTGGAGGTGGACT < 41bp 1 0.0406367113498527 1 0.0922984182834625 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614550 chr3:50614568 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_40599 0 0 0 0 2 HEMK1 chr3:50614483 3'AG 50614483 Downstream 86bp
chr3 50614568 50614568 1 + G A UCEC 50614550 + 50614530 50614570 41 TGTGGGATCCCCAGGCAGCCCCCTCATTCTGGAGGTGGGCT TGTGGGATCCCCAGGCAGCCCCCTCATTCTGGAGGTGGACT < 41bp 1 0.0406367113498527 1 0.0922984182834625 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614550 chr3:50614568 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_40599 0 0 0 0 2 HEMK1 chr3:50614617 5'GT 50614617 Upstream 50bp
chr3 50614568 50614568 1 + G A UCEC 50614569 + 50614549 50614589 41 CCCCTCATTCTGGAGGTGGGCTGCGGATCAGGAGCCATCTC CCCCTCATTCTGGAGGTGGACTGCGGATCAGGAGCCATCTC < 41bp 1 0.757729458965263 1 0.127553522586823 experiment 0.484541082069473 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614569 chr3:50614568 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_40600 0 0 0 0 2 HEMK1 chr3:50614483 3'AG 50614483 Downstream 86bp
chr3 50614568 50614568 1 + G A UCEC 50614569 + 50614549 50614589 41 CCCCTCATTCTGGAGGTGGGCTGCGGATCAGGAGCCATCTC CCCCTCATTCTGGAGGTGGACTGCGGATCAGGAGCCATCTC < 41bp 1 0.757729458965263 1 0.127553522586823 experiment 0.484541082069473 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614569 chr3:50614568 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_40600 0 0 0 0 2 HEMK1 chr3:50614617 5'GT 50614617 Upstream 50bp
chr1 55452078 55452078 1 + G T UCEC 55452081 + 55452061 55452101 41 CACCTCTCCAGAGACCTGTACTACCTCACTGTGGAGTCCTC CACCTCTCCAGAGACCTTTACTACCTCACTGTGGAGTCCTC < 41bp 1 0.157632097182081 1 0.170741081237793 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM61 ENSG00000143001 CDS Human protein_coding chr1:55452081 chr1:55452078 synonymous SNV . 0 18 hm5C_associated_SNPs_40602 0 0 0 0 1 TMEM61 chr1:55452119 5'GT 55452119 Upstream 42bp
chr6 35047380 35047380 1 + T G UCEC 35047379 + 35047359 35047399 41 CTGCAGGACTACGTCCATTCCTTCTTGTCAAGTGGTTACAG CTGCAGGACTACGTCCATTCCGTCTTGTCAAGTGGTTACAG < 41bp 1 0.214473001055431 1 0.0704146921634674 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKS1A ENSG00000064999 CDS Human protein_coding chr6:35047379 chr6:35047380 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_40603 0 0 0 0 2 ANKS1A chr6:35047293 3'AG 35047293 Downstream 88bp
chr6 35047380 35047380 1 + T G UCEC 35047379 + 35047359 35047399 41 CTGCAGGACTACGTCCATTCCTTCTTGTCAAGTGGTTACAG CTGCAGGACTACGTCCATTCCGTCTTGTCAAGTGGTTACAG < 41bp 1 0.214473001055431 1 0.0704146921634674 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKS1A ENSG00000064999 CDS Human protein_coding chr6:35047379 chr6:35047380 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_40603 0 0 0 0 2 ANKS1A chr6:35047445 5'GT 35047445 Upstream 66bp
chr11 8706403 8706403 1 + G C UCEC 8706393 + 8706373 8706413 41 ACAGACACGGGTGAATGCTGCTAAAAACAAGACTGGGGCTG ACAGACACGGGTGAATGCTGCTAAAAACAACACTGGGGCTG < 41bp 1 0.676246968445928 1 0.732649803161621 experiment 0.647506063108145 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL27A ENSG00000166441 CDS Human protein_coding chr11:8706393 chr11:8706403 nonsynonymous SNV 0.974 0 31 hm5C_associated_SNPs_40604 0 0 1 0 1 RPL27A chr11:8706439 5'GT 8706439 Upstream 37bp
chr7 44802523 44802523 1 + G A UCEC 44802539 + 44802519 44802559 41 GTCCGCTCGGTGCTGCAGGGCCTCCTCAAAAAGCGCCTCCT GTCCACTCGGTGCTGCAGGGCCTCCTCAAAAAGCGCCTCCT < 41bp 1 0.0297539771981604 1 0.0305063128471375 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44802539 chr7:44802523 nonsynonymous SNV 0.024 4 5 hm5C_associated_SNPs_40605 0 0 1 0 1 ZMIZ2 chr7:44802480 3'AG 44802480 Downstream 44bp
chrX 103434379 103434379 1 + G T UCEC 103434382 + 103434362 103434402 41 GGAAGGAGAGGCTCAGTGGGCTCTTCCTTAACGAAGAGGTG GGAAGGAGAGGCTCAGTTGGCTCTTCCTTAACGAAGAGGTG < 41bp 1 0.357350215252482 1 0.153372079133987 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAM199X ENSG00000123575 CDS Human protein_coding chrX:103434382 chrX:103434379 nonsynonymous SNV 0.999 4 18 hm5C_associated_SNPs_40606 0 0 1 0 1 FAM199X chrX:103434289 3'AG 103434289 Downstream 91bp
chrX 48385609 48385609 1 + G A UCEC 48385618 + 48385598 48385638 41 CTCAGCCTGTGGGTGGTGATCGCCTTTCTCCGCCAGCATCC CTCAGCCTGTGAGTGGTGATCGCCTTTCTCCGCCAGCATCC < 41bp 1 0.766904458622166 1 0.157773166894913 experiment 0.466191082755669 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EBP ENSG00000147155 CDS Human protein_coding chrX:48385618 chrX:48385609 stopgain 1.000 0 12 hm5C_associated_SNPs_40607 0 0 1 0 2 EBP chrX:48385543 3'AG 48385543 Downstream 67bp
chrX 48385609 48385609 1 + G A UCEC 48385618 + 48385598 48385638 41 CTCAGCCTGTGGGTGGTGATCGCCTTTCTCCGCCAGCATCC CTCAGCCTGTGAGTGGTGATCGCCTTTCTCCGCCAGCATCC < 41bp 1 0.766904458622166 1 0.157773166894913 experiment 0.466191082755669 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EBP ENSG00000147155 CDS Human protein_coding chrX:48385618 chrX:48385609 stopgain 1.000 0 12 hm5C_associated_SNPs_40607 0 0 1 0 2 EBP chrX:48385673 5'GT 48385673 Upstream 65bp
chr15 99491876 99491876 1 + G T UCEC 99491873 + 99491853 99491893 41 ACCAGGGCTTGTCCAACGAGCAAGTCCTTCGCTTCGTCATG ACCAGGGCTTGTCCAACGAGCAATTCCTTCGCTTCGTCATG < 41bp 1 0.061376446768441 1 0.0493241250514984 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient IGF1R ENSG00000140443 CDS Human protein_coding chr15:99491873 chr15:99491876 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_40608 0 0 0 0 2 IGF1R chr15:99491803 3'AG 99491803 Downstream 74bp
chr15 99491876 99491876 1 + G T UCEC 99491873 + 99491853 99491893 41 ACCAGGGCTTGTCCAACGAGCAAGTCCTTCGCTTCGTCATG ACCAGGGCTTGTCCAACGAGCAATTCCTTCGCTTCGTCATG < 41bp 1 0.061376446768441 1 0.0493241250514984 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient IGF1R ENSG00000140443 CDS Human protein_coding chr15:99491873 chr15:99491876 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_40608 0 0 0 0 2 IGF1R chr15:99491937 5'GT 99491937 Upstream 62bp
chr2 39008756 39008756 1 + C A UCEC 39008755 + 39008735 39008775 41 GAAACTATGAATGAAGGGGACCATAGAGTGAGGGAGAAGCT GAAACTATGAATGAAGGGGACAATAGAGTGAGGGAGAAGCT < 41bp 1 0.464974961483498 1 0.315204560756683 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39008755 chr2:39008756 nonsynonymous SNV 0.747 0 22 hm5C_associated_SNPs_40609 0 0 1 0 1 GEMIN6 chr2:39008659 3'AG 39008659 Downstream 98bp
chr1 52870474 52870474 1 + A G UCEC 52870493 + 52870473 52870513 41 CAATATCTGGTGGAGAAGATCATTCGAACGCGAATCTATGA CGATATCTGGTGGAGAAGATCATTCGAACGCGAATCTATGA < 41bp 1 0.155347089917335 1 0.100541055202484 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52870493 chr1:52870474 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_40611 0 0 1 0 1 PRPF38A chr1:52870551 5'GT 52870551 Upstream 78bp
chr10 73111519 73111519 1 + T C UCEC 73111516 + 73111496 73111536 41 CGGCATGACCGGCTCCTTTCCTATGAGGAACTCCCAGGCAC CGGCATGACCGGCTCCTTTCCTACGAGGAACTCCCAGGCAC < 41bp 1 0.736014953972885 1 0.639504194259644 experiment 0.527970092054231 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73111516 chr10:73111519 nonsynonymous SNV 0.986 1 24 hm5C_associated_SNPs_40612 0 0 0 0 1 SLC29A3 chr10:73111545 5'GT 73111545 Upstream 27bp
chr2 89028816 89028816 1 + G A UCEC 89028799 + 89028779 89028819 41 TTCCCTGTCCTCCGCAGGCCCGCCAGCTCATCCTGCAGTAT TTCCCTGTCCTCCGCAGGCCCGCCAGCTCATCCTGCAATAT < 41bp 1 0.772567460892753 1 0.268481373786926 experiment 0.454865078214493 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPIA ENSG00000153574 CDS Human protein_coding chr2:89028799 chr2:89028816 synonymous SNV . 0 38 hm5C_associated_SNPs_40615 0 0 1 0 2 RPIA chr2:89028796 3'AG 89028796 Downstream 21bp
chr2 89028816 89028816 1 + G A UCEC 89028799 + 89028779 89028819 41 TTCCCTGTCCTCCGCAGGCCCGCCAGCTCATCCTGCAGTAT TTCCCTGTCCTCCGCAGGCCCGCCAGCTCATCCTGCAATAT < 41bp 1 0.772567460892753 1 0.268481373786926 experiment 0.454865078214493 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPIA ENSG00000153574 CDS Human protein_coding chr2:89028799 chr2:89028816 synonymous SNV . 0 38 hm5C_associated_SNPs_40615 0 0 1 0 2 RPIA chr2:89028855 5'GT 89028855 Upstream 40bp
chr16 1545435 1545435 1 + C T UCEC 1545447 + 1545427 1545467 41 CGCAGTGTCGGCAGCAGACGCAGCCCGGCTTCATCCTGCTC CGCAGTGTTGGCAGCAGACGCAGCCCGGCTTCATCCTGCTC < 41bp 1 0.468111204454933 1 0.359881997108459 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1545447 chr16:1545435 nonsynonymous SNV 0.021 1 9 hm5C_associated_SNPs_40616 0 0 0 0 1 TELO2 chr16:1545347 3'AG 1545347 Downstream 89bp
chr21 47970639 47970639 1 + C T UCEC 47970626 + 47970606 47970646 41 TGCCCTCACACCTGTGTTACCAACCTCCCCAAACCTCGTCA TGCCCTCACACCTGTGTTACCAACCTCCCCAAATCTCGTCA < 41bp 1 0.236297120860366 1 0.166033834218979 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47970626 chr21:47970639 nonsynonymous SNV 0.995 4 34 hm5C_associated_SNPs_40617 0 0 1 0 1 DIP2A chr21:47970657 5'GT 47970657 Upstream 19bp
chr6 147635028 147635028 1 + T C UCEC 147635039 + 147635019 147635059 41 GATATCCTATATTTGAAAATCCCTACCCTTTGAGTATACAT GATATCCTACATTTGAAAATCCCTACCCTTTGAGTATACAT < 41bp 1 0.0837669599104926 1 0.199543207883835 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP5 ENSG00000164506 CDS Human protein_coding chr6:147635039 chr6:147635028 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_40618 0 0 1 0 1 STXBP5 chr6:147635020 3'AG 147635020 Downstream 9bp
chr8 98699747 98699747 1 + C T UCEC 98699751 + 98699731 98699771 41 GGTTCATTGGATTCAACTATCCCTGGGATAGAAAATACCAT GGTTCATTGGATTCAATTATCCCTGGGATAGAAAATACCAT < 41bp 1 0.263745850409657 1 0.0685345530509949 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98699751 chr8:98699747 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_40619 0 0 1 0 2 MTDH chr8:98699657 3'AG 98699657 Downstream 91bp
chr8 98699747 98699747 1 + C T UCEC 98699751 + 98699731 98699771 41 GGTTCATTGGATTCAACTATCCCTGGGATAGAAAATACCAT GGTTCATTGGATTCAATTATCCCTGGGATAGAAAATACCAT < 41bp 1 0.263745850409657 1 0.0685345530509949 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98699751 chr8:98699747 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_40619 0 0 1 0 2 MTDH chr8:98699833 5'GT 98699833 Upstream 87bp
chr12 132464254 132464254 1 + G T UCEC 132464239 + 132464219 132464259 41 TTTTTCATCTTTTTTCCCAGCAGCAAGCCCTCGCAGGGAGC TTTTTCATCTTTTTTCCCAGCAGCAAGCCCTCGCATGGAGC < 41bp 1 0.210951888076147 1 0.350771069526672 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132464239 chr12:132464254 nonsynonymous SNV 0.551 5 36 hm5C_associated_SNPs_40620 0 0 1 0 3 EP400 chr12:132464239 3'AG 132464239 Downstream 16bp
chr12 132464254 132464254 1 + G T UCEC 132464239 + 132464219 132464259 41 TTTTTCATCTTTTTTCCCAGCAGCAAGCCCTCGCAGGGAGC TTTTTCATCTTTTTTCCCAGCAGCAAGCCCTCGCATGGAGC < 41bp 1 0.210951888076147 1 0.350771069526672 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132464239 chr12:132464254 nonsynonymous SNV 0.551 5 36 hm5C_associated_SNPs_40620 0 0 1 0 3 EP400 chr12:132464242 3'AG 132464242 Downstream 13bp
chr12 132464254 132464254 1 + G T UCEC 132464239 + 132464219 132464259 41 TTTTTCATCTTTTTTCCCAGCAGCAAGCCCTCGCAGGGAGC TTTTTCATCTTTTTTCCCAGCAGCAAGCCCTCGCATGGAGC < 41bp 1 0.210951888076147 1 0.350771069526672 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132464239 chr12:132464254 nonsynonymous SNV 0.551 5 36 hm5C_associated_SNPs_40620 0 0 1 0 3 EP400 chr12:132464338 5'GT 132464338 Upstream 85bp
chr19 13054389 13054389 1 + C A UCEC 13054404 + 13054384 13054424 41 ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA ATCACAAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA < 41bp 1 0.644578594905751 1 0.152832508087158 experiment 0.710842810188499 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054404 chr19:13054389 synonymous SNV . 0 6 hm5C_associated_SNPs_40621 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 39bp
chr19 13054389 13054389 1 + C A UCEC 13054404 + 13054384 13054424 41 ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA ATCACAAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA < 41bp 1 0.644578594905751 1 0.152832508087158 experiment 0.710842810188499 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054404 chr19:13054389 synonymous SNV . 0 6 hm5C_associated_SNPs_40621 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 55bp
chr19 13054389 13054389 1 + C A UCEC 13054406 + 13054386 13054426 41 CACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGAGA CACAAACGATGAGGCATACGCTGAGGAGTTTGGCAACGAGA < 41bp 1 0.706795027855633 1 0.307996571063995 experiment 0.586409944288734 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054406 chr19:13054389 synonymous SNV . 0 4 hm5C_associated_SNPs_40622 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 39bp
chr19 13054389 13054389 1 + C A UCEC 13054406 + 13054386 13054426 41 CACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGAGA CACAAACGATGAGGCATACGCTGAGGAGTTTGGCAACGAGA < 41bp 1 0.706795027855633 1 0.307996571063995 experiment 0.586409944288734 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054406 chr19:13054389 synonymous SNV . 0 4 hm5C_associated_SNPs_40622 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 55bp
chr16 29708335 29708335 1 + C T UCEC 29708327 + 29708307 29708347 41 TGCCCAGCAGGCGGTGCGGGCGGCCAGACAGGCGGCTGACT TGCCCAGCAGGCGGTGCGGGCGGCCAGATAGGCGGCTGACT < 41bp 1 0.407895189199425 1 0.443868815898895 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29708327 chr16:29708335 stopgain 0.016 0 29 hm5C_associated_SNPs_40623 0 0 1 0 1 QPRT chr16:29708317 3'AG 29708317 Downstream 19bp
chr16 29708335 29708335 1 + C T UCEC 29708330 + 29708310 29708350 41 CCAGCAGGCGGTGCGGGCGGCCAGACAGGCGGCTGACTTCA CCAGCAGGCGGTGCGGGCGGCCAGATAGGCGGCTGACTTCA < 41bp 1 0.55591566632066 1 0.443738222122192 experiment 0.888168667358679 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29708330 chr16:29708335 stopgain 0.016 0 26 hm5C_associated_SNPs_40624 0 0 1 0 1 QPRT chr16:29708317 3'AG 29708317 Downstream 19bp
chrX 9652125 9652125 1 + T C UCEC 9652130 + 9652110 9652150 41 GGATTGAGAGCCACATCAGCCAGTCCAACATCAATGGGACG GGATTGAGAGCCACACCAGCCAGTCCAACATCAATGGGACG < 41bp 1 0.0967549721113804 1 0.550479710102081 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBL1X ENSG00000101849 CDS Human protein_coding chrX:9652130 chrX:9652125 nonsynonymous SNV 0.999 4 16 hm5C_associated_SNPs_40625 0 0 0 0 1 TBL1X chrX:9652083 3'AG 9652083 Downstream 43bp
chr2 242396290 242396290 1 + A G UCEC 242396274 + 242396254 242396294 41 GAACAGGGCTCATCCCCACTCCTGAGCCCTGTCCTCAGTGA GAACAGGGCTCATCCCCACTCCTGAGCCCTGTCCTCGGTGA < 41bp 1 0.63138037342759 1 0.448498547077179 experiment 0.73723925314482 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FARP2 ENSG00000006607 CDS Human protein_coding chr2:242396274 chr2:242396290 nonsynonymous SNV 0.217 0 37 hm5C_associated_SNPs_40626 0 0 0 0 1 FARP2 chr2:242396337 5'GT 242396337 Upstream 48bp
chr17 78081619 78081619 1 + G A UCEC 78081601 + 78081581 78081621 41 GTCTCCTGCATGTCCCAGCCCGGTGCGAACCTCTACGGGTC GTCTCCTGCATGTCCCAGCCCGGTGCGAACCTCTACGGATC < 41bp 1 0.468562941679044 1 0.626557469367981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78081601 chr17:78081619 synonymous SNV . 0 39 hm5C_associated_SNPs_40627 0 0 1 0 2 GAA chr17:78081599 3'AG 78081599 Downstream 21bp
chr17 78081619 78081619 1 + G A UCEC 78081601 + 78081581 78081621 41 GTCTCCTGCATGTCCCAGCCCGGTGCGAACCTCTACGGGTC GTCTCCTGCATGTCCCAGCCCGGTGCGAACCTCTACGGATC < 41bp 1 0.468562941679044 1 0.626557469367981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78081601 chr17:78081619 synonymous SNV . 0 39 hm5C_associated_SNPs_40627 0 0 1 0 2 GAA chr17:78081695 5'GT 78081695 Upstream 77bp
chr17 7214417 7214417 1 + C T UCEC 7214415 + 7214395 7214435 41 CAACTCATAATATGGATGTCCCCAACATCAAAAGGAATGAC CAACTCATAATATGGATGTCCCTAACATCAAAAGGAATGAC < 41bp 1 0.0850388707523243 1 0.0572859048843384 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214415 chr17:7214417 synonymous SNV . 0 23 hm5C_associated_SNPs_40628 0 0 1 0 2 EIF5A chr17:7214337 3'AG 7214337 Downstream 81bp
chr17 7214417 7214417 1 + C T UCEC 7214415 + 7214395 7214435 41 CAACTCATAATATGGATGTCCCCAACATCAAAAGGAATGAC CAACTCATAATATGGATGTCCCTAACATCAAAAGGAATGAC < 41bp 1 0.0850388707523243 1 0.0572859048843384 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214415 chr17:7214417 synonymous SNV . 0 23 hm5C_associated_SNPs_40628 0 0 1 0 2 EIF5A chr17:7214441 5'GT 7214441 Upstream 25bp
chr17 7214417 7214417 1 + C T UCEC 7214416 + 7214396 7214436 41 AACTCATAATATGGATGTCCCCAACATCAAAAGGAATGACT AACTCATAATATGGATGTCCCTAACATCAAAAGGAATGACT < 41bp 1 0.130518791436925 1 0.133776932954788 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214416 chr17:7214417 synonymous SNV . 0 22 hm5C_associated_SNPs_40629 0 0 1 0 2 EIF5A chr17:7214337 3'AG 7214337 Downstream 81bp
chr17 7214417 7214417 1 + C T UCEC 7214416 + 7214396 7214436 41 AACTCATAATATGGATGTCCCCAACATCAAAAGGAATGACT AACTCATAATATGGATGTCCCTAACATCAAAAGGAATGACT < 41bp 1 0.130518791436925 1 0.133776932954788 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214416 chr17:7214417 synonymous SNV . 0 22 hm5C_associated_SNPs_40629 0 0 1 0 2 EIF5A chr17:7214441 5'GT 7214441 Upstream 25bp
chr9 132623223 132623223 1 + C A UCEC 132623233 + 132623213 132623253 41 CAGGACTCCCCGCCACCCTCCCACCCTCTGAAAGCTGTTCC CAGGACTCCCAGCCACCCTCCCACCCTCTGAAAGCTGTTCC < 41bp 1 0.0216214392957954 1 0.204140782356262 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP20 ENSG00000136878 CDS Human protein_coding chr9:132623233 chr9:132623223 nonsynonymous SNV 0.803 0 11 hm5C_associated_SNPs_40630 0 0 0 0 2 USP20 chr9:132623216 3'AG 132623216 Downstream 8bp
chr9 132623223 132623223 1 + C A UCEC 132623233 + 132623213 132623253 41 CAGGACTCCCCGCCACCCTCCCACCCTCTGAAAGCTGTTCC CAGGACTCCCAGCCACCCTCCCACCCTCTGAAAGCTGTTCC < 41bp 1 0.0216214392957954 1 0.204140782356262 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP20 ENSG00000136878 CDS Human protein_coding chr9:132623233 chr9:132623223 nonsynonymous SNV 0.803 0 11 hm5C_associated_SNPs_40630 0 0 0 0 2 USP20 chr9:132623312 5'GT 132623312 Upstream 90bp
chr17 29683571 29683571 1 + G A UCEC 29683551 + 29683531 29683571 41 CAAGAAATGGAATCAGGGATCACAACACCCCCCAAAATGAG CAAGAAATGGAATCAGGGATCACAACACCCCCCAAAATGAA < 41bp 1 0.262555249085134 1 0.412216782569885 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29683551 chr17:29683571 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_40634 0 0 1 1 2 NF1 chr17:29683478 3'AG 29683478 Downstream 94bp
chr17 29683571 29683571 1 + G A UCEC 29683551 + 29683531 29683571 41 CAAGAAATGGAATCAGGGATCACAACACCCCCCAAAATGAG CAAGAAATGGAATCAGGGATCACAACACCCCCCAAAATGAA < 41bp 1 0.262555249085134 1 0.412216782569885 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29683551 chr17:29683571 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_40634 0 0 1 1 2 NF1 chr17:29683600 5'GT 29683600 Upstream 30bp
chr19 7923169 7923169 1 + G T UCEC 7923165 + 7923145 7923185 41 GCAGCAGTGCAGCTCGGCGGCCGAGGACCTGCAGAAGGCAC GCAGCAGTGCAGCTCGGCGGCCGATGACCTGCAGAAGGCAC < 41bp 1 0.235931749391929 1 0.344191253185272 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control EVI5L ENSG00000142459 CDS Human protein_coding chr19:7923165 chr19:7923169 nonsynonymous SNV 0.862 1 25 hm5C_associated_SNPs_40635 0 0 0 0 2 EVI5L chr19:7923077 3'AG 7923077 Downstream 93bp
chr19 7923169 7923169 1 + G T UCEC 7923165 + 7923145 7923185 41 GCAGCAGTGCAGCTCGGCGGCCGAGGACCTGCAGAAGGCAC GCAGCAGTGCAGCTCGGCGGCCGATGACCTGCAGAAGGCAC < 41bp 1 0.235931749391929 1 0.344191253185272 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control EVI5L ENSG00000142459 CDS Human protein_coding chr19:7923165 chr19:7923169 nonsynonymous SNV 0.862 1 25 hm5C_associated_SNPs_40635 0 0 0 0 2 EVI5L chr19:7923217 5'GT 7923217 Upstream 49bp
chr11 764349 764349 1 + C T UCEC 764334 + 764314 764354 41 CACCTGGATGAGAAGTCTTTCCGTTGGTTGCACAACGAGGA CACCTGGATGAGAAGTCTTTCCGTTGGTTGCACAATGAGGA < 41bp 1 0.189284786854044 1 0.587426662445068 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control TALDO1 ENSG00000177156 CDS Human protein_coding chr11:764334 chr11:764349 nonsynonymous SNV 0.988 2 36 hm5C_associated_SNPs_40636 0 0 1 0 2 TALDO1 chr11:764288 3'AG 764288 Downstream 62bp
chr11 764349 764349 1 + C T UCEC 764334 + 764314 764354 41 CACCTGGATGAGAAGTCTTTCCGTTGGTTGCACAACGAGGA CACCTGGATGAGAAGTCTTTCCGTTGGTTGCACAATGAGGA < 41bp 1 0.189284786854044 1 0.587426662445068 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control TALDO1 ENSG00000177156 CDS Human protein_coding chr11:764334 chr11:764349 nonsynonymous SNV 0.988 2 36 hm5C_associated_SNPs_40636 0 0 1 0 2 TALDO1 chr11:764433 5'GT 764433 Upstream 85bp
chr2 27257057 27257057 1 + C T UCEC 27257075 + 27257055 27257095 41 AGCCAAAGAAGGTGGCAACTCCTCCCAACCAAAACCAGAAG AGTCAAAGAAGGTGGCAACTCCTCCCAACCAAAACCAGAAG < 41bp 1 0.127478316960125 1 0.459565043449402 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27257075 chr2:27257057 nonsynonymous SNV 0.928 1 3 hm5C_associated_SNPs_40638 0 0 0 0 1 TMEM214 chr2:27257134 5'GT 27257134 Upstream 78bp
chr11 73073727 73073727 1 + G A UCEC 73073732 + 73073712 73073752 41 TTCGCCCAGCCCCTCGGGGACGCTGCAGAGCCAGGCCAGCC TTCGCCCAGCCCCTCAGGGACGCTGCAGAGCCAGGCCAGCC < 41bp 1 0.166445220305155 1 0.176104784011841 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73073732 chr11:73073727 synonymous SNV . 0 16 hm5C_associated_SNPs_40639 0 0 0 0 1 ARHGEF17 chr11:73073779 5'GT 73073779 Upstream 53bp
chr16 89971377 89971377 1 + C A UCEC 89971393 + 89971373 89971413 41 GAACCTGTACCTTGGGAGGTCACACTTTCTCTGGAAAGAGC GAACATGTACCTTGGGAGGTCACACTTTCTCTGGAAAGAGC < 41bp 1 0.26160074209636 1 0.132683128118515 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89971393 chr16:89971377 nonsynonymous SNV 0.949 3 5 hm5C_associated_SNPs_40640 0 0 1 0 1 TCF25 chr16:89971346 3'AG 89971346 Downstream 32bp
chr1 171544181 171544181 1 + C T UCEC 171544172 + 171544152 171544192 41 AACTGGAGTCAGCAGTAGTGCCAGTGGACCAAGCACTGCTA AACTGGAGTCAGCAGTAGTGCCAGTGGACTAAGCACTGCTA < 41bp 1 0.191821045207861 1 0.468962609767914 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171544172 chr1:171544181 nonsynonymous SNV 1.000 0 30 hm5C_associated_SNPs_40641 0 0 1 0 1 PRRC2C chr1:171544267 5'GT 171544267 Upstream 87bp
chr11 67815229 67815229 1 + C T UCEC 67815244 + 67815224 67815264 41 CCCCTCGGGCTGGAGTGTGGCCGCCATGGCCAACCAGTCTG CCCCTTGGGCTGGAGTGTGGCCGCCATGGCCAACCAGTCTG < 41bp 1 0.317154173635225 1 0.0421819686889648 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815244 chr11:67815229 nonsynonymous SNV 0.996 5 6 hm5C_associated_SNPs_40642 0 0 0 0 1 TCIRG1 chr11:67815271 5'GT 67815271 Upstream 43bp
chr2 38908569 38908569 1 + G A UCEC 38908580 + 38908560 38908600 41 AGAGCACAAGCCAGTCAGGCCACACCAGTCAACCTGACCAA AGAGCACAAACCAGTCAGGCCACACCAGTCAACCTGACCAA < 41bp 1 0.212718885257965 1 0.144612103700638 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GALM ENSG00000143891 CDS Human protein_coding chr2:38908580 chr2:38908569 nonsynonymous SNV 0.985 0 10 hm5C_associated_SNPs_40645 0 0 1 0 1 GALM chr2:38908628 5'GT 38908628 Upstream 60bp
chrX 49127136 49127136 1 + T C UCEC 49127142 + 49127122 49127162 41 CGCTATGAGACCCCTGAGGGCACTTTCTGGGCCAACAACCA CGCTATGAGACCCCCGAGGGCACTTTCTGGGCCAACAACCA < 41bp 1 0.118295196544664 1 0.0630346238613129 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPP1R3F ENSG00000049769 CDS Human protein_coding chrX:49127142 chrX:49127136 synonymous SNV . 0 15 hm5C_associated_SNPs_40646 0 0 1 0 1 PPP1R3F chrX:49127071 3'AG 49127071 Downstream 66bp
chr1 24996695 24996695 1 + G A UCEC 24996676 + 24996656 24996696 41 CCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGC CCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAAC < 41bp 1 0.643206993679559 1 0.321196734905243 experiment 0.713586012640883 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996676 chr1:24996695 synonymous SNV . 0 40 hm5C_associated_SNPs_40647 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 85bp
chr1 24996695 24996695 1 + G A UCEC 24996681 + 24996661 24996701 41 CTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCA CTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAACCCCCA < 41bp 1 0.231201750073726 1 0.576540470123291 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996681 chr1:24996695 synonymous SNV . 0 35 hm5C_associated_SNPs_40648 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 85bp
chr1 24996695 24996695 1 + G A UCEC 24996688 + 24996668 24996708 41 CGGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTC CGGGTCTCCTGAGCCAGCAGCTAAAAAACCCCCAGCACCTC < 41bp 1 0.616754799045132 1 0.632949352264404 experiment 0.766490401909735 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996688 chr1:24996695 synonymous SNV . 0 28 hm5C_associated_SNPs_40649 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 85bp
chr1 24996695 24996695 1 + G A UCEC 24996696 + 24996676 24996716 41 CTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCC CTGAGCCAGCAGCTAAAAAACCCCCAGCACCTCCATCCCCC < 41bp 1 0.413512594400593 1 0.0884632170200348 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996696 chr1:24996695 synonymous SNV . 0 20 hm5C_associated_SNPs_40650 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 85bp
chr1 24996695 24996695 1 + G A UCEC 24996697 + 24996677 24996717 41 TGAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCCG TGAGCCAGCAGCTAAAAAACCCCCAGCACCTCCATCCCCCG < 41bp 1 0.71964093263908 1 0.158609747886658 experiment 0.560718134721839 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996697 chr1:24996695 synonymous SNV . 0 19 hm5C_associated_SNPs_40651 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 85bp
chr1 24996695 24996695 1 + G A UCEC 24996698 + 24996678 24996718 41 GAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGT GAGCCAGCAGCTAAAAAACCCCCAGCACCTCCATCCCCCGT < 41bp 1 0.287793047740456 1 0.0813460648059845 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996698 chr1:24996695 synonymous SNV . 0 18 hm5C_associated_SNPs_40652 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 85bp
chr1 24996695 24996695 1 + G A UCEC 24996703 + 24996683 24996723 41 AGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGT AGCAGCTAAAAAACCCCCAGCACCTCCATCCCCCGTCCAGT < 41bp 1 0.190296188509312 1 0.0676509141921997 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996703 chr1:24996695 synonymous SNV . 0 13 hm5C_associated_SNPs_40653 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 85bp
chr1 24996695 24996695 1 + G A UCEC 24996705 + 24996685 24996725 41 CAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGTCT CAGCTAAAAAACCCCCAGCACCTCCATCCCCCGTCCAGTCT < 41bp 1 0.0446162090390725 1 0.0241390764713287 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996705 chr1:24996695 synonymous SNV . 0 11 hm5C_associated_SNPs_40654 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 85bp
chr1 24996695 24996695 1 + G A UCEC 24996709 + 24996689 24996729 41 TAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGTCTCAGT TAAAAAACCCCCAGCACCTCCATCCCCCGTCCAGTCTCAGT < 41bp 1 0.0616619909014358 1 0.0763353705406189 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996709 chr1:24996695 synonymous SNV . 0 7 hm5C_associated_SNPs_40655 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 85bp
chr13 114203831 114203831 1 + C T UCEC 114203825 + 114203805 114203845 41 TGCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCA TGCAATCACGAGGTGTGTGCCCAGACTGGAGAGACGGTCCA < 41bp 1 0.741885708492206 1 0.10286471247673 experiment 0.516228583015588 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114203825 chr13:114203831 nonsynonymous SNV 0.268 1 27 hm5C_associated_SNPs_40656 0 0 0 0 1 TMCO3 chr13:114203740 3'AG 114203740 Downstream 92bp
chr13 114203831 114203831 1 + C T UCEC 114203826 + 114203806 114203846 41 GCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCAG GCAATCACGAGGTGTGTGCCCAGACTGGAGAGACGGTCCAG < 41bp 1 0.692511589720903 1 0.121402204036713 experiment 0.614976820558195 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114203826 chr13:114203831 nonsynonymous SNV 0.268 1 26 hm5C_associated_SNPs_40657 0 0 0 0 1 TMCO3 chr13:114203740 3'AG 114203740 Downstream 92bp
chr5 139928645 139928645 1 + A C UCEC 139928628 + 139928608 139928648 41 CTCTCTCCAAGCTGGAGGAGCTGAAGGAGCAGGAGACAGAG CTCTCTCCAAGCTGGAGGAGCTGAAGGAGCAGGAGACCGAG < 41bp 1 0.624553365574824 1 0.358637124300003 experiment 0.750893268850352 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANKHD1-EIF4EBP3;EIF4EBP3 ENSG00000131503;ENSG00000243056;ENSG00000254996 CDS Human other chr5:139928628 chr5:139928645 synonymous SNV . 0 38 hm5C_associated_SNPs_40658 0 0 1 0 1 ANKHD1-EIF4EBP3;EIF4EBP3 chr5:139928661 5'GT 139928661 Upstream 17bp
chr3 15253710 15253710 1 + C T UCEC 15253701 + 15253681 15253721 41 CTGAGTATCTGGAAAGAGTTCAAGCTCTACATTCAGCAGGT CTGAGTATCTGGAAAGAGTTCAAGCTCTATATTCAGCAGGT < 41bp 1 0.453308933867379 1 0.219733983278275 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CAPN7 ENSG00000131375 CDS Human protein_coding chr3:15253701 chr3:15253710 nonsynonymous SNV 0.193 0 30 hm5C_associated_SNPs_40659 0 0 1 0 2 CAPN7 chr3:15253611 3'AG 15253611 Downstream 100bp
chr3 15253710 15253710 1 + C T UCEC 15253701 + 15253681 15253721 41 CTGAGTATCTGGAAAGAGTTCAAGCTCTACATTCAGCAGGT CTGAGTATCTGGAAAGAGTTCAAGCTCTATATTCAGCAGGT < 41bp 1 0.453308933867379 1 0.219733983278275 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CAPN7 ENSG00000131375 CDS Human protein_coding chr3:15253701 chr3:15253710 nonsynonymous SNV 0.193 0 30 hm5C_associated_SNPs_40659 0 0 1 0 2 CAPN7 chr3:15253719 5'GT 15253719 Upstream 10bp
chr19 41078014 41078014 1 + G A UCEC 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGATGGGG < 41bp 1 0.371943556469397 1 0.848341107368469 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41078014 nonsynonymous SNV 0.803 0 36 hm5C_associated_SNPs_40660 0 0 0 0 2 SPTBN4 chr19:41077925 3'AG 41077925 Downstream 90bp
chr19 41078014 41078014 1 + G A UCEC 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGATGGGG < 41bp 1 0.371943556469397 1 0.848341107368469 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41078014 nonsynonymous SNV 0.803 0 36 hm5C_associated_SNPs_40660 0 0 0 0 2 SPTBN4 chr19:41078098 5'GT 41078098 Upstream 85bp
chr17 76399727 76399727 1 + T C UCEC 76399746 + 76399726 76399766 41 ATGCTGCATGCCCAGACCTTCCACAGCAACTCTCTTTTGAC ACGCTGCATGCCCAGACCTTCCACAGCAACTCTCTTTTGAC < 41bp 1 0.366904774928759 1 0.111531227827072 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PGS1 ENSG00000087157 CDS Human protein_coding chr17:76399746 chr17:76399727 nonsynonymous SNV 0.808 0 2 hm5C_associated_SNPs_40665 0 0 1 2 1 PGS1 chr17:76399649 3'AG 76399649 Downstream 79bp
chr1 109815791 109815791 1 + G A UCEC 109815795 + 109815775 109815815 41 CTTTCCCCACCAGATGGGGGCCCAGGGCCTGGCAAGGCCCC CTTTCCCCACCAGATGAGGGCCCAGGGCCTGGCAAGGCCCC < 41bp 1 0.0843903520500286 1 0.493110924959183 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109815795 chr1:109815791 nonsynonymous SNV 0.990 0 17 hm5C_associated_SNPs_40666 0 0 0 0 1 CELSR2 chr1:109815788 3'AG 109815788 Downstream 4bp
chr1 109815791 109815791 1 + G A UCEC 109815796 + 109815776 109815816 41 TTTCCCCACCAGATGGGGGCCCAGGGCCTGGCAAGGCCCCC TTTCCCCACCAGATGAGGGCCCAGGGCCTGGCAAGGCCCCC < 41bp 1 0.141000654699618 1 0.639180898666382 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109815796 chr1:109815791 nonsynonymous SNV 0.990 0 16 hm5C_associated_SNPs_40667 0 0 0 0 1 CELSR2 chr1:109815788 3'AG 109815788 Downstream 4bp
chr8 142176424 142176424 1 + G A UCEC 142176432 + 142176412 142176452 41 TGCCATGCCTGAGCTGGCACCCAGGAACTCCTCGCTCCGGC TGCCATGCCTGAACTGGCACCCAGGAACTCCTCGCTCCGGC < 41bp 1 0.370157834736945 1 0.790663361549377 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DENND3 ENSG00000105339 CDS Human protein_coding chr8:142176432 chr8:142176424 synonymous SNV . 0 13 hm5C_associated_SNPs_40668 0 0 0 0 1 DENND3 chr8:142176488 5'GT 142176488 Upstream 65bp
chr11 837585 837585 1 + G A UCEC 837583 + 837563 837603 41 CGGTGGTGGCTCTTTGTGGGCAGCGAGACCATGCCTCCAAC CGGTGGTGGCTCTTTGTGGGCAACGAGACCATGCCTCCAAC < 41bp 1 0.661177069972808 1 0.172374874353409 experiment 0.677645860054383 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD151 ENSG00000177697 CDS Human protein_coding chr11:837583 chr11:837585 synonymous SNV . 0 23 hm5C_associated_SNPs_40669 0 0 1 1 1 CD151 chr11:837618 5'GT 837618 Upstream 34bp
chr8 48874120 48874120 1 + G T UCEC 48874104 + 48874084 48874124 41 GAGGATGCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA GAGGATGCCAGGTCATCTCCCTCTCAGAGACGTAGATGCGA < 41bp 1 0.139882038998523 1 0.0629492104053497 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874104 chr8:48874120 nonsynonymous SNV 0.516 0 37 hm5C_associated_SNPs_40671 0 0 1 0 1 MCM4 chr8:48874076 3'AG 48874076 Downstream 45bp
chr1 198233303 198233303 1 + G T UCEC 198233296 + 198233276 198233316 41 ATAAAATATTATGCATCATTCATTGAAGATAATGAACTAAA ATAAAATATTATGCATCATTCATTGAATATAATGAACTAAA < 41bp 1 0.111406756223215 1 0.255815267562866 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233296 chr1:198233303 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_40675 0 0 1 0 2 NEK7 chr1:198233255 3'AG 198233255 Downstream 49bp
chr1 198233303 198233303 1 + G T UCEC 198233296 + 198233276 198233316 41 ATAAAATATTATGCATCATTCATTGAAGATAATGAACTAAA ATAAAATATTATGCATCATTCATTGAATATAATGAACTAAA < 41bp 1 0.111406756223215 1 0.255815267562866 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233296 chr1:198233303 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_40675 0 0 1 0 2 NEK7 chr1:198233365 5'GT 198233365 Upstream 63bp
chr11 61897307 61897307 1 + G T UCEC 61897299 + 61897279 61897319 41 AGCCAGCTGAGCTCCCGACGCCTCCGCAGCAAGGACAGTGT AGCCAGCTGAGCTCCCGACGCCTCCGCATCAAGGACAGTGT < 41bp 1 0.0417581287753186 1 0.107030242681503 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61897299 chr11:61897307 nonsynonymous SNV 0.919 3 29 hm5C_associated_SNPs_40676 0 0 1 0 1 INCENP chr11:61897254 3'AG 61897254 Downstream 54bp
chr11 64701242 64701242 1 + G T UCEC 64701255 + 64701235 64701275 41 GCTACAGGGGACCCAGGGGGCCAAGGAGGCCCCCCTCCAGC GCTACAGTGGACCCAGGGGGCCAAGGAGGCCCCCCTCCAGC < 41bp 1 0.585047142722821 1 0.553826093673706 experiment 0.829905714554358 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP2R5B ENSG00000068971 CDS Human protein_coding chr11:64701255 chr11:64701242 nonsynonymous SNV 0.998 3 8 hm5C_associated_SNPs_40677 0 0 1 0 1 PPP2R5B chr11:64701169 3'AG 64701169 Downstream 74bp
chr22 50877169 50877169 1 + C T UCEC 50877165 + 50877145 50877185 41 GGCCCCCGGGAAGAAGGAAGCGCCCCCTGTGGAGGGTGACT GGCCCCCGGGAAGAAGGAAGCGCCTCCTGTGGAGGGTGACT < 41bp 1 0.384953250262429 1 0.216906756162643 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50877165 chr22:50877169 synonymous SNV . 0 25 hm5C_associated_SNPs_40678 0 0 1 0 1 PPP6R2 chr22:50877191 5'GT 50877191 Upstream 23bp
chr20 39978515 39978515 1 + C T UCEC 39978516 + 39978496 39978536 41 GAGTCCCACATGCAGTGGGCCTGGGGGAGGCTGCCTAAGGT GAGTCCCACATGCAGTGGGTCTGGGGGAGGCTGCCTAAGGT < 41bp 1 0.714141159085301 1 0.826404809951782 experiment 0.571717681829399 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39978516 chr20:39978515 nonsynonymous SNV 0.998 0 20 hm5C_associated_SNPs_40679 0 0 1 0 1 LPIN3 chr20:39978534 5'GT 39978534 Upstream 20bp
chr16 89759812 89759812 1 + T C UCEC 89759823 + 89759803 89759843 41 CAGCGGATTTCGGCCTGGCCCGGGCCTATGGTGTCCCAGTA CAGCGGATTCCGGCCTGGCCCGGGCCTATGGTGTCCCAGTA < 41bp 1 0.645244073056396 1 0.823930263519287 experiment 0.709511853887207 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CDK10 ENSG00000185324 CDS Human protein_coding chr16:89759823 chr16:89759812 nonsynonymous SNV 0.948 4 10 hm5C_associated_SNPs_40683 0 0 1 0 2 CDK10 chr16:89759806 3'AG 89759806 Downstream 7bp
chr16 89759812 89759812 1 + T C UCEC 89759823 + 89759803 89759843 41 CAGCGGATTTCGGCCTGGCCCGGGCCTATGGTGTCCCAGTA CAGCGGATTCCGGCCTGGCCCGGGCCTATGGTGTCCCAGTA < 41bp 1 0.645244073056396 1 0.823930263519287 experiment 0.709511853887207 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CDK10 ENSG00000185324 CDS Human protein_coding chr16:89759823 chr16:89759812 nonsynonymous SNV 0.948 4 10 hm5C_associated_SNPs_40683 0 0 1 0 2 CDK10 chr16:89759875 5'GT 89759875 Upstream 64bp
chr11 9456544 9456544 1 + A G UCEC 9456531 + 9456511 9456551 41 CAGTTGATACAGACACACTTCTGTCTGACACCAAGTATCTT CAGTTGATACAGACACACTTCTGTCTGACACCAGGTATCTT < 41bp 1 0.169755625561256 1 0.104059129953384 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9456531 chr11:9456544 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_40684 0 0 1 0 2 IPO7 chr11:9456481 3'AG 9456481 Downstream 64bp
chr11 9456544 9456544 1 + A G UCEC 9456531 + 9456511 9456551 41 CAGTTGATACAGACACACTTCTGTCTGACACCAAGTATCTT CAGTTGATACAGACACACTTCTGTCTGACACCAGGTATCTT < 41bp 1 0.169755625561256 1 0.104059129953384 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9456531 chr11:9456544 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_40684 0 0 1 0 2 IPO7 chr11:9456578 5'GT 9456578 Upstream 35bp
chr10 102798421 102798421 1 + C T UCEC 102798423 + 102798403 102798443 41 CGCCCCTGGCTGGGGGCACCCCTGCAGGTGGGACTGGTGGG CGCCCCTGGCTGGGGGCATCCCTGCAGGTGGGACTGGTGGG < 41bp 1 0.194301575937807 1 0.188364923000336 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SFXN3 ENSG00000107819 CDS Human protein_coding chr10:102798423 chr10:102798421 nonsynonymous SNV 0.671 3 19 hm5C_associated_SNPs_40685 0 0 1 0 2 SFXN3 chr10:102798400 3'AG 102798400 Downstream 22bp
chr10 102798421 102798421 1 + C T UCEC 102798423 + 102798403 102798443 41 CGCCCCTGGCTGGGGGCACCCCTGCAGGTGGGACTGGTGGG CGCCCCTGGCTGGGGGCATCCCTGCAGGTGGGACTGGTGGG < 41bp 1 0.194301575937807 1 0.188364923000336 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SFXN3 ENSG00000107819 CDS Human protein_coding chr10:102798423 chr10:102798421 nonsynonymous SNV 0.671 3 19 hm5C_associated_SNPs_40685 0 0 1 0 2 SFXN3 chr10:102798449 5'GT 102798449 Upstream 29bp
chr19 12036064 12036064 1 + C T UCEC 12036063 + 12036043 12036083 41 CAGGAGCTGTAGAGAGGACCCCGGTACATCTGAAAGCCGGG CAGGAGCTGTAGAGAGGACCCTGGTACATCTGAAAGCCGGG < 41bp 1 0.679086469128031 1 0.449285745620728 experiment 0.641827061743939 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF700 ENSG00000196757;ENSG00000197054;ENSG00000267179 CDS Human other chr19:12036063 chr19:12036064 synonymous SNV . 0 22 hm5C_associated_SNPs_40686 0 0 1 0 1 ZNF700 chr19:12036088 5'GT 12036088 Upstream 25bp
chr1 114500824 114500824 1 + G A UCEC 114500816 + 114500796 114500836 41 GCACCAGTTCCTGGAGTTGCCCAGCAGGGTGTTTCCTTGCA GCACCAGTTCCTGGAGTTGCCCAGCAGGATGTTTCCTTGCA < 41bp 1 0.312863798918533 1 0.388331174850464 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114500816 chr1:114500824 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_40688 0 0 1 0 1 HIPK1 chr1:114500913 5'GT 114500913 Upstream 90bp
chr1 180049715 180049715 1 + G A UCEC 180049727 + 180049707 180049747 41 ATAGGACTGGAGGACAATGTCACCTGCCTATCAAGTCCCAT ATAGGACTAGAGGACAATGTCACCTGCCTATCAAGTCCCAT < 41bp 1 0.3481363351472 1 0.26077863574028 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180049727 chr1:180049715 nonsynonymous SNV 0.962 2 9 hm5C_associated_SNPs_40690 0 0 1 0 2 CEP350 chr1:180049652 3'AG 180049652 Downstream 64bp
chr1 180049715 180049715 1 + G A UCEC 180049727 + 180049707 180049747 41 ATAGGACTGGAGGACAATGTCACCTGCCTATCAAGTCCCAT ATAGGACTAGAGGACAATGTCACCTGCCTATCAAGTCCCAT < 41bp 1 0.3481363351472 1 0.26077863574028 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180049727 chr1:180049715 nonsynonymous SNV 0.962 2 9 hm5C_associated_SNPs_40690 0 0 1 0 2 CEP350 chr1:180049796 5'GT 180049796 Upstream 82bp
chr3 33883505 33883505 1 + T C UCEC 33883497 + 33883477 33883517 41 GTGATTGAACAGGGAGGCATCCAGACTGTTGATCAGTTGAT GTGATTGAACAGGGAGGCATCCAGACTGCTGATCAGTTGAT < 41bp 1 0.562830879203392 1 0.200825572013855 experiment 0.874338241593215 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33883497 chr3:33883505 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_40691 0 0 1 0 1 PDCD6IP chr3:33883566 5'GT 33883566 Upstream 62bp
chr21 47978256 47978256 1 + G A UCEC 47978252 + 47978232 47978272 41 AAGGACCTGGGCCTGCCGGCCCGCGCCGTAAGCACCACGTT AAGGACCTGGGCCTGCCGGCCCGCACCGTAAGCACCACGTT < 41bp 1 0.415487237427875 1 0.310711354017258 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47978252 chr21:47978256 nonsynonymous SNV 0.143 4 25 hm5C_associated_SNPs_40693 0 0 1 0 1 DIP2A chr21:47978306 5'GT 47978306 Upstream 51bp
chr5 141364477 141364477 1 + C A UCEC 141364483 + 141364463 141364503 41 ACATTTCAATGACCCTGGTTCACCATGTTTTAACCGGTATG ACATTTCAATGACCATGGTTCACCATGTTTTAACCGGTATG < 41bp 1 0.656054450288393 1 0.212841331958771 experiment 0.687891099423215 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF14 ENSG00000013561 CDS Human protein_coding chr5:141364483 chr5:141364477 nonsynonymous SNV 0.216 4 15 hm5C_associated_SNPs_40695 0 0 1 0 1 RNF14 chr5:141364498 5'GT 141364498 Upstream 22bp
chr19 4422641 4422641 1 + C T UCEC 4422658 + 4422638 4422678 41 AAGCGGGCCAAGGAGGAGGCCAAGAAGAAGAAGGAGGAAGA AAGTGGGCCAAGGAGGAGGCCAAGAAGAAGAAGGAGGAAGA < 41bp 1 0.574705984775676 1 0.672837257385254 experiment 0.850588030448648 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4422658 chr19:4422641 nonsynonymous SNV 0.728 2 4 hm5C_associated_SNPs_40696 0 0 1 0 1 CHAF1A chr19:4422563 3'AG 4422563 Downstream 79bp
chr10 129141943 129141943 1 + T G UCEC 129141924 + 129141904 129141944 41 TTTCAGCTGTGGAACAACTACTTTCACCTGGCTGTTGCTTT TTTCAGCTGTGGAACAACTACTTTCACCTGGCTGTTGCTGT < 41bp 1 0.0224334073564358 1 0.0520175993442535 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141924 chr10:129141943 nonsynonymous SNV 0.979 4 40 hm5C_associated_SNPs_40697 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 34bp
chr10 129141943 129141943 1 + T G UCEC 129141924 + 129141904 129141944 41 TTTCAGCTGTGGAACAACTACTTTCACCTGGCTGTTGCTTT TTTCAGCTGTGGAACAACTACTTTCACCTGGCTGTTGCTGT < 41bp 1 0.0224334073564358 1 0.0520175993442535 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141924 chr10:129141943 nonsynonymous SNV 0.979 4 40 hm5C_associated_SNPs_40697 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 68bp
chr10 129141943 129141943 1 + T G UCEC 129141930 + 129141910 129141950 41 CTGTGGAACAACTACTTTCACCTGGCTGTTGCTTTCCTTAC CTGTGGAACAACTACTTTCACCTGGCTGTTGCTGTCCTTAC < 41bp 1 0.157586592870957 1 0.426722466945648 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141930 chr10:129141943 nonsynonymous SNV 0.979 4 34 hm5C_associated_SNPs_40698 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 34bp
chr10 129141943 129141943 1 + T G UCEC 129141930 + 129141910 129141950 41 CTGTGGAACAACTACTTTCACCTGGCTGTTGCTTTCCTTAC CTGTGGAACAACTACTTTCACCTGGCTGTTGCTGTCCTTAC < 41bp 1 0.157586592870957 1 0.426722466945648 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141930 chr10:129141943 nonsynonymous SNV 0.979 4 34 hm5C_associated_SNPs_40698 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 68bp
chr10 129141943 129141943 1 + T G UCEC 129141931 + 129141911 129141951 41 TGTGGAACAACTACTTTCACCTGGCTGTTGCTTTCCTTACT TGTGGAACAACTACTTTCACCTGGCTGTTGCTGTCCTTACT < 41bp 1 0.22437253616669 1 0.237238973379135 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141931 chr10:129141943 nonsynonymous SNV 0.979 4 33 hm5C_associated_SNPs_40699 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 34bp
chr10 129141943 129141943 1 + T G UCEC 129141931 + 129141911 129141951 41 TGTGGAACAACTACTTTCACCTGGCTGTTGCTTTCCTTACT TGTGGAACAACTACTTTCACCTGGCTGTTGCTGTCCTTACT < 41bp 1 0.22437253616669 1 0.237238973379135 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141931 chr10:129141943 nonsynonymous SNV 0.979 4 33 hm5C_associated_SNPs_40699 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 68bp
chr10 129141943 129141943 1 + T G UCEC 129141935 + 129141915 129141955 41 GAACAACTACTTTCACCTGGCTGTTGCTTTCCTTACTCAAG GAACAACTACTTTCACCTGGCTGTTGCTGTCCTTACTCAAG < 41bp 1 0.0492466726415323 1 0.0657682716846466 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141935 chr10:129141943 nonsynonymous SNV 0.979 4 29 hm5C_associated_SNPs_40700 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 34bp
chr10 129141943 129141943 1 + T G UCEC 129141935 + 129141915 129141955 41 GAACAACTACTTTCACCTGGCTGTTGCTTTCCTTACTCAAG GAACAACTACTTTCACCTGGCTGTTGCTGTCCTTACTCAAG < 41bp 1 0.0492466726415323 1 0.0657682716846466 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141935 chr10:129141943 nonsynonymous SNV 0.979 4 29 hm5C_associated_SNPs_40700 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 68bp
chr10 129141943 129141943 1 + T G UCEC 129141941 + 129141921 129141961 41 CTACTTTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCC CTACTTTCACCTGGCTGTTGCTGTCCTTACTCAAGAGTCCC < 41bp 1 0.0367625615998966 1 0.121206223964691 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141941 chr10:129141943 nonsynonymous SNV 0.979 4 23 hm5C_associated_SNPs_40701 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 34bp
chr10 129141943 129141943 1 + T G UCEC 129141941 + 129141921 129141961 41 CTACTTTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCC CTACTTTCACCTGGCTGTTGCTGTCCTTACTCAAGAGTCCC < 41bp 1 0.0367625615998966 1 0.121206223964691 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141941 chr10:129141943 nonsynonymous SNV 0.979 4 23 hm5C_associated_SNPs_40701 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 68bp
chr10 129141943 129141943 1 + T G UCEC 129141945 + 129141925 129141965 41 TTTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCA TTTCACCTGGCTGTTGCTGTCCTTACTCAAGAGTCCCTGCA < 41bp 1 0.0746626379076363 1 0.0268371999263763 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141945 chr10:129141943 nonsynonymous SNV 0.979 4 19 hm5C_associated_SNPs_40702 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 34bp
chr10 129141943 129141943 1 + T G UCEC 129141945 + 129141925 129141965 41 TTTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCA TTTCACCTGGCTGTTGCTGTCCTTACTCAAGAGTCCCTGCA < 41bp 1 0.0746626379076363 1 0.0268371999263763 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141945 chr10:129141943 nonsynonymous SNV 0.979 4 19 hm5C_associated_SNPs_40702 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 68bp
chr10 129141943 129141943 1 + T G UCEC 129141946 + 129141926 129141966 41 TTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCAA TTCACCTGGCTGTTGCTGTCCTTACTCAAGAGTCCCTGCAA < 41bp 1 0.0491633148200354 1 0.0325277745723724 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141946 chr10:129141943 nonsynonymous SNV 0.979 4 18 hm5C_associated_SNPs_40703 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 34bp
chr10 129141943 129141943 1 + T G UCEC 129141946 + 129141926 129141966 41 TTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCAA TTCACCTGGCTGTTGCTGTCCTTACTCAAGAGTCCCTGCAA < 41bp 1 0.0491633148200354 1 0.0325277745723724 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141946 chr10:129141943 nonsynonymous SNV 0.979 4 18 hm5C_associated_SNPs_40703 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 68bp
chr10 129141943 129141943 1 + T G UCEC 129141950 + 129141930 129141970 41 CCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCAACTGG CCTGGCTGTTGCTGTCCTTACTCAAGAGTCCCTGCAACTGG < 41bp 1 0.568311152106419 1 0.921694934368134 experiment 0.863377695787162 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141950 chr10:129141943 nonsynonymous SNV 0.979 4 14 hm5C_associated_SNPs_40704 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 34bp
chr10 129141943 129141943 1 + T G UCEC 129141950 + 129141930 129141970 41 CCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCAACTGG CCTGGCTGTTGCTGTCCTTACTCAAGAGTCCCTGCAACTGG < 41bp 1 0.568311152106419 1 0.921694934368134 experiment 0.863377695787162 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141950 chr10:129141943 nonsynonymous SNV 0.979 4 14 hm5C_associated_SNPs_40704 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 68bp
chr10 129141943 129141943 1 + T G UCEC 129141960 + 129141940 129141980 41 GCTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTC GCTGTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTC < 41bp 1 0.0108055813366443 1 0.0454113781452179 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141960 chr10:129141943 nonsynonymous SNV 0.979 4 4 hm5C_associated_SNPs_40705 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 34bp
chr10 129141943 129141943 1 + T G UCEC 129141960 + 129141940 129141980 41 GCTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTC GCTGTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTC < 41bp 1 0.0108055813366443 1 0.0454113781452179 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141960 chr10:129141943 nonsynonymous SNV 0.979 4 4 hm5C_associated_SNPs_40705 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 68bp
chr10 129141943 129141943 1 + T G UCEC 129141961 + 129141941 129141981 41 CTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCA CTGTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCA < 41bp 1 0.198081230004467 1 0.264208763837814 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141961 chr10:129141943 nonsynonymous SNV 0.979 4 3 hm5C_associated_SNPs_40706 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 34bp
chr10 129141943 129141943 1 + T G UCEC 129141961 + 129141941 129141981 41 CTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCA CTGTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCA < 41bp 1 0.198081230004467 1 0.264208763837814 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141961 chr10:129141943 nonsynonymous SNV 0.979 4 3 hm5C_associated_SNPs_40706 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 68bp
chr1 28897780 28897780 1 + G A UCEC 28897788 + 28897768 28897808 41 ATGCTCAGTGGGGCTATGACCAGAACACAGGCAGCTACAGC ATGCTCAGTGGGACTATGACCAGAACACAGGCAGCTACAGC < 41bp 1 0.783837509119289 1 0.282699435949326 experiment 0.432324981761422 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRNAU1AP ENSG00000180098 CDS Human protein_coding chr1:28897788 chr1:28897780 nonsynonymous SNV 0.996 1 13 hm5C_associated_SNPs_40707 0 0 1 0 2 TRNAU1AP chr1:28897688 3'AG 28897688 Downstream 93bp
chr1 28897780 28897780 1 + G A UCEC 28897788 + 28897768 28897808 41 ATGCTCAGTGGGGCTATGACCAGAACACAGGCAGCTACAGC ATGCTCAGTGGGACTATGACCAGAACACAGGCAGCTACAGC < 41bp 1 0.783837509119289 1 0.282699435949326 experiment 0.432324981761422 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRNAU1AP ENSG00000180098 CDS Human protein_coding chr1:28897788 chr1:28897780 nonsynonymous SNV 0.996 1 13 hm5C_associated_SNPs_40707 0 0 1 0 2 TRNAU1AP chr1:28897850 5'GT 28897850 Upstream 71bp
chr1 120269483 120269483 1 + C T UCEC 120269481 + 120269461 120269501 41 TCTATCCTTGCAGGCAGATTCCCCAGGCGACGGCTTCGATG TCTATCCTTGCAGGCAGATTCCTCAGGCGACGGCTTCGATG < 41bp 1 0.536316732461747 1 0.0980839729309082 experiment 0.927366535076505 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120269481 chr1:120269483 synonymous SNV . 0 23 hm5C_associated_SNPs_40709 0 0 1 0 2 PHGDH chr1:120269474 3'AG 120269474 Downstream 10bp
chr1 120269483 120269483 1 + C T UCEC 120269481 + 120269461 120269501 41 TCTATCCTTGCAGGCAGATTCCCCAGGCGACGGCTTCGATG TCTATCCTTGCAGGCAGATTCCTCAGGCGACGGCTTCGATG < 41bp 1 0.536316732461747 1 0.0980839729309082 experiment 0.927366535076505 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120269481 chr1:120269483 synonymous SNV . 0 23 hm5C_associated_SNPs_40709 0 0 1 0 2 PHGDH chr1:120269528 5'GT 120269528 Upstream 46bp
chr10 103908233 103908233 1 + G A UCEC 103908226 + 103908206 103908246 41 CATCCTCATCATCCAGTTCTCGAAGCCGCTCACGATCCCCA CATCCTCATCATCCAGTTCTCGAAGCCACTCACGATCCCCA < 41bp 1 0.452138674607577 1 0.740006446838379 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103908226 chr10:103908233 nonsynonymous SNV 0.710 4 28 hm5C_associated_SNPs_40710 0 0 1 0 1 PPRC1 chr10:103908278 5'GT 103908278 Upstream 46bp
chr15 93482841 93482841 1 + G A UCEC 93482839 + 93482819 93482859 41 AACCTCGTGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAG AACCTCGTGTTAAAAAGCAGCCAAAGACTCAGCGTGGAAAG < 41bp 1 0.136288891984055 1 0.0389395654201508 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482839 chr15:93482841 synonymous SNV . 0 23 hm5C_associated_SNPs_40712 0 0 1 0 1 CHD2 chr15:93482808 3'AG 93482808 Downstream 34bp
chr15 93482841 93482841 1 + G A UCEC 93482840 + 93482820 93482860 41 ACCTCGTGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGA ACCTCGTGTTAAAAAGCAGCCAAAGACTCAGCGTGGAAAGA < 41bp 1 0.129368424290833 1 0.301869332790375 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482840 chr15:93482841 synonymous SNV . 0 22 hm5C_associated_SNPs_40713 0 0 1 0 1 CHD2 chr15:93482808 3'AG 93482808 Downstream 34bp
chr15 93482841 93482841 1 + G A UCEC 93482846 + 93482826 93482866 41 TGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAAAA TGTTAAAAAGCAGCCAAAGACTCAGCGTGGAAAGAGAAAAA < 41bp 1 0.324454446465253 1 0.574907660484314 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482846 chr15:93482841 synonymous SNV . 0 16 hm5C_associated_SNPs_40714 0 0 1 0 1 CHD2 chr15:93482808 3'AG 93482808 Downstream 34bp
chr15 93482841 93482841 1 + G A UCEC 93482848 + 93482828 93482868 41 TTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAAAAAG TTAAAAAGCAGCCAAAGACTCAGCGTGGAAAGAGAAAAAAG < 41bp 1 0.487060763884326 1 0.781708955764771 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482848 chr15:93482841 synonymous SNV . 0 14 hm5C_associated_SNPs_40715 0 0 1 0 1 CHD2 chr15:93482808 3'AG 93482808 Downstream 34bp
chr1 41457481 41457481 1 + G T UCEC 41457471 + 41457451 41457491 41 CTCAAATCCACTTGACACATCAGTGAAGGAGAAAATATCAA CTCAAATCCACTTGACACATCAGTGAAGGATAAAATATCAA < 41bp 1 0.193597862350645 1 0.206164449453354 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTPS1 ENSG00000171793 CDS Human protein_coding chr1:41457471 chr1:41457481 nonsynonymous SNV 1.000 0 31 hm5C_associated_SNPs_40716 0 0 1 0 2 CTPS1 chr1:41457437 3'AG 41457437 Downstream 45bp
chr1 41457481 41457481 1 + G T UCEC 41457471 + 41457451 41457491 41 CTCAAATCCACTTGACACATCAGTGAAGGAGAAAATATCAA CTCAAATCCACTTGACACATCAGTGAAGGATAAAATATCAA < 41bp 1 0.193597862350645 1 0.206164449453354 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTPS1 ENSG00000171793 CDS Human protein_coding chr1:41457471 chr1:41457481 nonsynonymous SNV 1.000 0 31 hm5C_associated_SNPs_40716 0 0 1 0 2 CTPS1 chr1:41457517 5'GT 41457517 Upstream 37bp
chr7 130020967 130020967 1 + G A UCEC 130020965 + 130020945 130020985 41 GGTGCTCCGAATCTCTGTAGCCGATGAGGCCCAGGTACAGA GGTGCTCCGAATCTCTGTAGCCAATGAGGCCCAGGTACAGA < 41bp 1 0.180444482370396 1 0.0637930333614349 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130020965 chr7:130020967 nonsynonymous SNV 0.046 0 23 hm5C_associated_SNPs_40717 0 0 0 0 2 CPA1 chr7:130020939 3'AG 130020939 Downstream 29bp
chr7 130020967 130020967 1 + G A UCEC 130020965 + 130020945 130020985 41 GGTGCTCCGAATCTCTGTAGCCGATGAGGCCCAGGTACAGA GGTGCTCCGAATCTCTGTAGCCAATGAGGCCCAGGTACAGA < 41bp 1 0.180444482370396 1 0.0637930333614349 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130020965 chr7:130020967 nonsynonymous SNV 0.046 0 23 hm5C_associated_SNPs_40717 0 0 0 0 2 CPA1 chr7:130021020 5'GT 130021020 Upstream 54bp
chr5 82406963 82406963 1 + T C UCEC 82406946 + 82406926 82406966 41 ATTGTTGTCAGGAGCAGGACCAGCTGATGTATACACGTTTA ATTGTTGTCAGGAGCAGGACCAGCTGATGTATACACGCTTA < 41bp 1 0.636868043279348 1 0.492426604032516 experiment 0.726263913441305 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XRCC4 ENSG00000152422 CDS Human protein_coding chr5:82406946 chr5:82406963 nonsynonymous SNV 0.555 3 38 hm5C_associated_SNPs_40721 0 0 1 0 1 XRCC4 chr5:82407022 5'GT 82407022 Upstream 60bp
chr7 142460311 142460311 1 + G T UCEC 142460291 + 142460271 142460311 41 GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGG GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGT < 41bp 1 0.401385763684567 1 0.448532670736313 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460291 chr7:142460311 nonsynonymous SNV 0.002 2 41 hm5C_associated_SNPs_40722 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 30bp
chr7 142460311 142460311 1 + G T UCEC 142460295 + 142460275 142460315 41 CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGC CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGTATGC < 41bp 1 0.343012845107263 1 0.38860034942627 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460295 chr7:142460311 nonsynonymous SNV 0.002 2 37 hm5C_associated_SNPs_40723 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 30bp
chr7 142460311 142460311 1 + G T UCEC 142460299 + 142460279 142460319 41 CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT CAGCCGACTACCCAGACGAGCTGCAGTGCCTGTATGCTCCT < 41bp 1 0.675795568513747 1 0.256605088710785 experiment 0.648408862972506 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460299 chr7:142460311 nonsynonymous SNV 0.002 2 33 hm5C_associated_SNPs_40724 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 30bp
chr7 142460311 142460311 1 + G T UCEC 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGACGAGCTGCAGTGCCTGTATGCTCCTGTG < 41bp 1 0.252272518290741 1 0.0682804882526398 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460311 nonsynonymous SNV 0.002 2 30 hm5C_associated_SNPs_40725 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 30bp
chr7 142460311 142460311 1 + G T UCEC 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGCCTGTATGCTCCTGTGCTGAG < 41bp 1 0.100167624914395 1 0.0434274971485138 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460311 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_40726 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 30bp
chr7 142460311 142460311 1 + G T UCEC 142460308 + 142460288 142460328 41 ACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGC ACCCAGACGAGCTGCAGTGCCTGTATGCTCCTGTGCTGAGC < 41bp 1 0.688997720203915 1 0.517783045768738 experiment 0.622004559592169 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460308 chr7:142460311 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_40727 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 30bp
chr7 142460311 142460311 1 + G T UCEC 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGTATGCTCCTGTGCTGAGCCAGGCTA < 41bp 1 0.509191646973155 1 0.302042454481125 experiment 0.981616706053691 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460311 nonsynonymous SNV 0.002 2 17 hm5C_associated_SNPs_40728 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 30bp
chr7 142460311 142460311 1 + G T UCEC 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGTATGCTCCTGTGCTGAGCCAGGCTAAG < 41bp 1 0.21410112856686 1 0.380719304084778 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460311 nonsynonymous SNV 0.002 2 15 hm5C_associated_SNPs_40729 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 30bp
chr7 142460311 142460311 1 + G T UCEC 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGTATGCTCCTGTGCTGAGCCAGGCTAAGT < 41bp 1 0.424305278112487 1 0.144024074077606 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460311 nonsynonymous SNV 0.002 2 14 hm5C_associated_SNPs_40730 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 30bp
chr7 142460311 142460311 1 + G T UCEC 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGTATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA < 41bp 1 0.437913210180414 1 0.052130252122879 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460311 nonsynonymous SNV 0.002 2 9 hm5C_associated_SNPs_40731 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 30bp
chr7 142460311 142460311 1 + G T UCEC 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGTATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC < 41bp 1 0.349125619982262 1 0.286329507827759 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460311 nonsynonymous SNV 0.002 2 4 hm5C_associated_SNPs_40732 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 30bp
chr7 142460311 142460311 1 + G T UCEC 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGTATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC < 41bp 1 0.575415783484947 1 0.742589950561523 experiment 0.849168433030105 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460311 nonsynonymous SNV 0.002 2 3 hm5C_associated_SNPs_40733 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 30bp
chr19 41078001 41078001 1 + G A UCEC 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GGACTCCAAGGGCCCGGCATCCAGGAGCACACACGGTGGGG < 41bp 1 0.269808966841758 1 0.876202166080475 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41078001 nonsynonymous SNV 0.609 3 23 hm5C_associated_SNPs_40734 0 0 1 0 2 SPTBN4 chr19:41077925 3'AG 41077925 Downstream 77bp
chr19 41078001 41078001 1 + G A UCEC 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GGACTCCAAGGGCCCGGCATCCAGGAGCACACACGGTGGGG < 41bp 1 0.269808966841758 1 0.876202166080475 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41078001 nonsynonymous SNV 0.609 3 23 hm5C_associated_SNPs_40734 0 0 1 0 2 SPTBN4 chr19:41078098 5'GT 41078098 Upstream 98bp
chr7 98564724 98564724 1 + C T UCEC 98564739 + 98564719 98564759 41 AAAAACGCTTTCCGGAAGACCTTGAATTAAATGCCCAGTTT AAAAATGCTTTCCGGAAGACCTTGAATTAAATGCCCAGTTT < 41bp 1 0.202837359972086 1 0.254385769367218 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98564739 chr7:98564724 nonsynonymous SNV 0.998 2 6 hm5C_associated_SNPs_40735 0 0 1 0 2 TRRAP chr7:98564664 3'AG 98564664 Downstream 61bp
chr7 98564724 98564724 1 + C T UCEC 98564739 + 98564719 98564759 41 AAAAACGCTTTCCGGAAGACCTTGAATTAAATGCCCAGTTT AAAAATGCTTTCCGGAAGACCTTGAATTAAATGCCCAGTTT < 41bp 1 0.202837359972086 1 0.254385769367218 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98564739 chr7:98564724 nonsynonymous SNV 0.998 2 6 hm5C_associated_SNPs_40735 0 0 1 0 2 TRRAP chr7:98564785 5'GT 98564785 Upstream 62bp
chr11 120317116 120317116 1 + G T UCEC 120317136 + 120317116 120317156 41 GAGAAGACCTGAGCTCATTCCTGAGGATCTGCATCGCCACT TAGAAGACCTGAGCTCATTCCTGAGGATCTGCATCGCCACT < 41bp 1 0.357020333856865 1 0.477932542562485 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120317136 chr11:120317116 nonsynonymous SNV 0.983 4 1 hm5C_associated_SNPs_40736 0 0 1 0 1 ARHGEF12 chr11:120317112 3'AG 120317112 Downstream 5bp
chr2 70122274 70122274 1 + G A UCEC 70122272 + 70122252 70122292 41 CGGGAGAGAGAACGCAGGCGCCGAGAAAGGTCCAGGTCTCG CGGGAGAGAGAACGCAGGCGCCAAGAAAGGTCCAGGTCTCG < 41bp 1 0.646158210479685 1 0.442948430776596 experiment 0.707683579040629 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70122272 chr2:70122274 nonsynonymous SNV 0.985 1 23 hm5C_associated_SNPs_40738 0 0 1 1 2 SNRNP27 chr2:70122226 3'AG 70122226 Downstream 49bp
chr2 70122274 70122274 1 + G A UCEC 70122272 + 70122252 70122292 41 CGGGAGAGAGAACGCAGGCGCCGAGAAAGGTCCAGGTCTCG CGGGAGAGAGAACGCAGGCGCCAAGAAAGGTCCAGGTCTCG < 41bp 1 0.646158210479685 1 0.442948430776596 experiment 0.707683579040629 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70122272 chr2:70122274 nonsynonymous SNV 0.985 1 23 hm5C_associated_SNPs_40738 0 0 1 1 2 SNRNP27 chr2:70122346 5'GT 70122346 Upstream 73bp
chr9 19300318 19300318 1 + G T UCEC 19300313 + 19300293 19300333 41 AGCTGTCTTGACTGGGGTAGCTGAAGCTGTTGTAGCTGTAA AGCTGTCTTGACTGGGGTAGCTGAATCTGTTGTAGCTGTAA < 41bp 1 0.5628629436997 1 0.581621944904327 experiment 0.874274112600599 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DENND4C ENSG00000137145 CDS Human protein_coding chr9:19300313 chr9:19300318 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_40739 0 0 1 0 1 DENND4C chr9:19300329 5'GT 19300329 Upstream 12bp
chr17 48736637 48736637 1 + G T UCEC 48736623 + 48736603 48736643 41 CCATCTATGGCTACCGGCATCCCCTGGAGGAGAAGGACCTC CCATCTATGGCTACCGGCATCCCCTGGAGGAGAATGACCTC < 41bp 1 0.188847710588277 1 0.15810552239418 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48736623 chr17:48736637 stopgain 0.997 1 35 hm5C_associated_SNPs_40741 0 0 1 0 2 ABCC3 chr17:48736598 3'AG 48736598 Downstream 40bp
chr17 48736637 48736637 1 + G T UCEC 48736623 + 48736603 48736643 41 CCATCTATGGCTACCGGCATCCCCTGGAGGAGAAGGACCTC CCATCTATGGCTACCGGCATCCCCTGGAGGAGAATGACCTC < 41bp 1 0.188847710588277 1 0.15810552239418 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48736623 chr17:48736637 stopgain 0.997 1 35 hm5C_associated_SNPs_40741 0 0 1 0 2 ABCC3 chr17:48736729 5'GT 48736729 Upstream 93bp
chr17 48736637 48736637 1 + G T UCEC 48736625 + 48736605 48736645 41 ATCTATGGCTACCGGCATCCCCTGGAGGAGAAGGACCTCTG ATCTATGGCTACCGGCATCCCCTGGAGGAGAATGACCTCTG < 41bp 1 0.312603779989562 1 0.403401613235474 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48736625 chr17:48736637 stopgain 0.997 1 33 hm5C_associated_SNPs_40742 0 0 1 0 2 ABCC3 chr17:48736598 3'AG 48736598 Downstream 40bp
chr17 48736637 48736637 1 + G T UCEC 48736625 + 48736605 48736645 41 ATCTATGGCTACCGGCATCCCCTGGAGGAGAAGGACCTCTG ATCTATGGCTACCGGCATCCCCTGGAGGAGAATGACCTCTG < 41bp 1 0.312603779989562 1 0.403401613235474 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48736625 chr17:48736637 stopgain 0.997 1 33 hm5C_associated_SNPs_40742 0 0 1 0 2 ABCC3 chr17:48736729 5'GT 48736729 Upstream 93bp
chr6 53785434 53785434 1 + C T UCEC 53785428 + 53785408 53785448 41 TCTTTGTCACTGCAGAGAATCTGCCTCGCTGTGGTGCACTG TCTTTGTCACTGCAGAGAATCTGCCTTGCTGTGGTGCACTG < 41bp 1 0.549584743978591 1 0.382216602563858 experiment 0.900830512042819 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53785428 chr6:53785434 nonsynonymous SNV 0.846 2 27 hm5C_associated_SNPs_40743 0 0 1 0 1 LRRC1 chr6:53785423 3'AG 53785423 Downstream 12bp
chr14 61997281 61997281 1 + C A UCEC 61997276 + 61997256 61997296 41 TGATGAGGTGGTCTACCCTACCTGGCTCCATGAAGATGCCA TGATGAGGTGGTCTACCCTACCTGGATCCATGAAGATGCCA < 41bp 1 0.126168684729555 1 0.134138971567154 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRKCH ENSG00000027075;ENSG00000258989 CDS Human other chr14:61997276 chr14:61997281 nonsynonymous SNV 0.997 0 26 hm5C_associated_SNPs_40744 0 0 0 0 1 PRKCH chr14:61997313 5'GT 61997313 Upstream 33bp
chr5 5303758 5303758 1 + C T UCEC 5303760 + 5303740 5303780 41 CCAACCCCTCGGCCAGAGCGCAGCTGCTGCCCGACGCTGTC CCAACCCCTCGGCCAGAGTGCAGCTGCTGCCCGACGCTGTC < 41bp 1 0.474541797386447 1 0.190200626850128 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5303760 chr5:5303758 nonsynonymous SNV 0.013 1 19 hm5C_associated_SNPs_40745 0 0 0 0 1 ADAMTS16 chr5:5303685 3'AG 5303685 Downstream 74bp
chr12 3389564 3389564 1 + A C UCEC 3389553 + 3389533 3389573 41 CCCTCCGCCTGGCAGGTGAACGAGAACGCCAAGAAGGACCT CCCTCCGCCTGGCAGGTGAACGAGAACGCCACGAAGGACCT < 41bp 1 0.744446041338917 1 0.733397722244263 experiment 0.511107917322166 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSPAN9 ENSG00000011105 CDS Human protein_coding chr12:3389553 chr12:3389564 nonsynonymous SNV 0.996 2 32 hm5C_associated_SNPs_40746 0 0 1 0 2 TSPAN9 chr12:3389548 3'AG 3389548 Downstream 17bp
chr12 3389564 3389564 1 + A C UCEC 3389553 + 3389533 3389573 41 CCCTCCGCCTGGCAGGTGAACGAGAACGCCAAGAAGGACCT CCCTCCGCCTGGCAGGTGAACGAGAACGCCACGAAGGACCT < 41bp 1 0.744446041338917 1 0.733397722244263 experiment 0.511107917322166 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSPAN9 ENSG00000011105 CDS Human protein_coding chr12:3389553 chr12:3389564 nonsynonymous SNV 0.996 2 32 hm5C_associated_SNPs_40746 0 0 1 0 2 TSPAN9 chr12:3389649 5'GT 3389649 Upstream 86bp
chr12 56537074 56537074 1 + C T UCEC 56537084 + 56537064 56537104 41 TCTGTCAAGTCTAATTCCTCCTTCATGTCAAGAGAGCGTGA TCTGTCAAGTTTAATTCCTCCTTCATGTCAAGAGAGCGTGA < 41bp 1 0.279868676135472 1 0.430492341518402 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56537084 chr12:56537074 nonsynonymous SNV 0.979 4 11 hm5C_associated_SNPs_40747 0 0 1 0 2 ESYT1 chr12:56537012 3'AG 56537012 Downstream 63bp
chr12 56537074 56537074 1 + C T UCEC 56537084 + 56537064 56537104 41 TCTGTCAAGTCTAATTCCTCCTTCATGTCAAGAGAGCGTGA TCTGTCAAGTTTAATTCCTCCTTCATGTCAAGAGAGCGTGA < 41bp 1 0.279868676135472 1 0.430492341518402 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56537084 chr12:56537074 nonsynonymous SNV 0.979 4 11 hm5C_associated_SNPs_40747 0 0 1 0 2 ESYT1 chr12:56537117 5'GT 56537117 Upstream 44bp
chr15 57526290 57526290 1 + A G UCEC 57526295 + 57526275 57526315 41 AGGTGATGCACTTGGAAAGGCTTTGGCATCTGTGAGTATTG AGGTGATGCACTTGGGAAGGCTTTGGCATCTGTGAGTATTG < 41bp 1 0.139338703585222 1 0.0476078689098358 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57526295 chr15:57526290 synonymous SNV . 0 16 hm5C_associated_SNPs_40748 0 0 1 0 2 TCF12 chr15:57526241 3'AG 57526241 Downstream 50bp
chr15 57526290 57526290 1 + A G UCEC 57526295 + 57526275 57526315 41 AGGTGATGCACTTGGAAAGGCTTTGGCATCTGTGAGTATTG AGGTGATGCACTTGGGAAGGCTTTGGCATCTGTGAGTATTG < 41bp 1 0.139338703585222 1 0.0476078689098358 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57526295 chr15:57526290 synonymous SNV . 0 16 hm5C_associated_SNPs_40748 0 0 1 0 2 TCF12 chr15:57526305 5'GT 57526305 Upstream 16bp
chr11 9530372 9530372 1 + G T UCEC 9530377 + 9530357 9530397 41 GAGGAGGAGCAGGAAGCCTTCTTTGAGCCGCCCCCAGGTGA GAGGAGGAGCAGGAATCCTTCTTTGAGCCGCCCCCAGGTGA < 41bp 1 0.409729996587332 1 0.0959291756153107 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9530377 chr11:9530372 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_40749 0 0 1 0 1 ZNF143 chr11:9530393 5'GT 9530393 Upstream 22bp
chr22 41322439 41322439 1 + A G UCEC 41322444 + 41322424 41322464 41 CAGCCAGGCTTCTTGACCTTCACTGCGGCCCACATGCACCT CAGCCAGGCTTCTTGGCCTTCACTGCGGCCCACATGCACCT < 41bp 1 0.342758492865164 1 0.255221962928772 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient XPNPEP3 ENSG00000196236 CDS Human protein_coding chr22:41322444 chr22:41322439 stoploss 0.078 0 16 hm5C_associated_SNPs_40750 0 0 1 0 1 XPNPEP3 chr22:41322467 5'GT 41322467 Upstream 29bp
chr12 110456189 110456189 1 + G A UCEC 110456173 + 110456153 110456193 41 CCTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATC CCTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCACATC < 41bp 1 0.387407613934635 1 0.338686764240265 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110456173 chr12:110456189 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_40751 0 0 1 0 1 ANKRD13A chr12:110456150 3'AG 110456150 Downstream 40bp
chr12 110456189 110456189 1 + G A UCEC 110456174 + 110456154 110456194 41 CTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATCT CTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCACATCT < 41bp 1 0.331973631286475 1 0.329476088285446 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110456174 chr12:110456189 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_40752 0 0 1 0 1 ANKRD13A chr12:110456150 3'AG 110456150 Downstream 40bp
chr22 38284440 38284440 1 + G A UCEC 38284433 + 38284413 38284453 41 TGCTTTTCTTTCTCTTCTAGCTTAATCGAACCCTGAAGAAG TGCTTTTCTTTCTCTTCTAGCTTAATCAAACCCTGAAGAAG < 41bp 1 0.195322735654396 1 0.0721326470375061 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3L ENSG00000100129 CDS Human protein_coding chr22:38284433 chr22:38284440 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_40753 0 0 1 0 1 EIF3L chr22:38284433 3'AG 38284433 Downstream 8bp
chr22 38284440 38284440 1 + G A UCEC 38284443 + 38284423 38284463 41 TCTCTTCTAGCTTAATCGAACCCTGAAGAAGATGGGACAGA TCTCTTCTAGCTTAATCAAACCCTGAAGAAGATGGGACAGA < 41bp 1 0.119704525741351 1 0.0952037870883942 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3L ENSG00000100129 CDS Human protein_coding chr22:38284443 chr22:38284440 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_40754 0 0 1 0 1 EIF3L chr22:38284433 3'AG 38284433 Downstream 8bp
chr19 10812883 10812883 1 + A G UCEC 10812865 + 10812845 10812885 41 GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAATGAGA GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAATGGGA < 41bp 1 0.204291814586335 1 0.107497334480286 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10812865 chr19:10812883 nonsynonymous SNV 0.778 0 39 hm5C_associated_SNPs_40755 0 0 1 0 2 QTRT1 chr19:10812792 3'AG 10812792 Downstream 92bp
chr19 10812883 10812883 1 + A G UCEC 10812865 + 10812845 10812885 41 GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAATGAGA GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAATGGGA < 41bp 1 0.204291814586335 1 0.107497334480286 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10812865 chr19:10812883 nonsynonymous SNV 0.778 0 39 hm5C_associated_SNPs_40755 0 0 1 0 2 QTRT1 chr19:10812930 5'GT 10812930 Upstream 48bp
chrX 153628224 153628224 1 + C T UCEC 153628229 + 153628209 153628249 41 CATATCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCAT CATATCCGGGTGCGGTTCCACCCCTTCCACGTCATCCGCAT < 41bp 1 0.362652306024457 1 0.0519974827766418 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628229 chrX:153628224 nonsynonymous SNV 0.973 3 16 hm5C_associated_SNPs_40756 0 0 1 0 1 RPL10 chrX:153628282 5'GT 153628282 Upstream 59bp
chr2 55056530 55056530 1 + C T UCEC 55056514 + 55056494 55056534 41 ATGTATGCTTGTGAAGAAGGCTTTGCCACTGGTGGGCGAGA ATGTATGCTTGTGAAGAAGGCTTTGCCACTGGTGGGTGAGA < 41bp 1 0.0295297985963758 1 0.105950474739075 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EML6 ENSG00000214595 CDS Human protein_coding chr2:55056514 chr2:55056530 stopgain 0.998 0 37 hm5C_associated_SNPs_40758 0 0 0 0 2 EML6 chr2:55056479 3'AG 55056479 Downstream 52bp
chr2 55056530 55056530 1 + C T UCEC 55056514 + 55056494 55056534 41 ATGTATGCTTGTGAAGAAGGCTTTGCCACTGGTGGGCGAGA ATGTATGCTTGTGAAGAAGGCTTTGCCACTGGTGGGTGAGA < 41bp 1 0.0295297985963758 1 0.105950474739075 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EML6 ENSG00000214595 CDS Human protein_coding chr2:55056514 chr2:55056530 stopgain 0.998 0 37 hm5C_associated_SNPs_40758 0 0 0 0 2 EML6 chr2:55056614 5'GT 55056614 Upstream 85bp
chr17 17041249 17041249 1 + C T UCEC 17041237 + 17041217 17041257 41 CTGTCTCTTCCAGAGGAGAGCGCCATGAGTAGCGACCGCAT CTGTCTCTTCCAGAGGAGAGCGCCATGAGTAGTGACCGCAT < 41bp 1 0.552027973266156 1 0.807135820388794 experiment 0.895944053467688 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17041237 chr17:17041249 synonymous SNV . 0 33 hm5C_associated_SNPs_40759 0 0 1 0 1 MPRIP chr17:17041230 3'AG 17041230 Downstream 20bp
chr13 103286379 103286379 1 + A G UCEC 103286380 + 103286360 103286400 41 TAACTGGACACTGAGAGGGACGCAGCTGATGAATGGAACAT TAACTGGACACTGAGAGGGGCGCAGCTGATGAATGGAACAT < 41bp 1 0.433995020316414 1 0.196266889572144 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TPP2 ENSG00000134900 CDS Human protein_coding chr13:103286380 chr13:103286379 nonsynonymous SNV 0.999 2 20 hm5C_associated_SNPs_40762 0 0 1 0 2 TPP2 chr13:103286300 3'AG 103286300 Downstream 80bp
chr13 103286379 103286379 1 + A G UCEC 103286380 + 103286360 103286400 41 TAACTGGACACTGAGAGGGACGCAGCTGATGAATGGAACAT TAACTGGACACTGAGAGGGGCGCAGCTGATGAATGGAACAT < 41bp 1 0.433995020316414 1 0.196266889572144 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TPP2 ENSG00000134900 CDS Human protein_coding chr13:103286380 chr13:103286379 nonsynonymous SNV 0.999 2 20 hm5C_associated_SNPs_40762 0 0 1 0 2 TPP2 chr13:103286448 5'GT 103286448 Upstream 70bp
chr11 44626947 44626947 1 + G A UCEC 44626956 + 44626936 44626976 41 CCCAGGTGACGGCCGGGGCCCTCTTCTACTTCAACATGGGC CCCAGGTGACGACCGGGGCCCTCTTCTACTTCAACATGGGC < 41bp 1 0.07653351421069 1 0.0353669226169586 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CD82 ENSG00000085117 CDS Human protein_coding chr11:44626956 chr11:44626947 nonsynonymous SNV 0.052 1 12 hm5C_associated_SNPs_40763 0 0 1 0 2 CD82 chr11:44626905 3'AG 44626905 Downstream 43bp
chr11 44626947 44626947 1 + G A UCEC 44626956 + 44626936 44626976 41 CCCAGGTGACGGCCGGGGCCCTCTTCTACTTCAACATGGGC CCCAGGTGACGACCGGGGCCCTCTTCTACTTCAACATGGGC < 41bp 1 0.07653351421069 1 0.0353669226169586 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CD82 ENSG00000085117 CDS Human protein_coding chr11:44626956 chr11:44626947 nonsynonymous SNV 0.052 1 12 hm5C_associated_SNPs_40763 0 0 1 0 2 CD82 chr11:44626979 5'GT 44626979 Upstream 33bp
chrX 24091279 24091279 1 + T C UCEC 24091260 + 24091240 24091280 41 GGTGAACATAGGATCCCTGTCAACAGGAGGGAGAGTTAGTG GGTGAACATAGGATCCCTGTCAACAGGAGGGAGAGTTAGCG < 41bp 1 0.760324990045532 1 0.226854562759399 experiment 0.479350019908936 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF2S3 ENSG00000130741 CDS Human protein_coding chrX:24091260 chrX:24091279 synonymous SNV . 0 40 hm5C_associated_SNPs_40765 0 0 1 0 1 EIF2S3 chrX:24091208 3'AG 24091208 Downstream 72bp
chr11 65392707 65392707 1 + G A UCEC 65392705 + 65392685 65392725 41 TCTGTGGCCTCCTGGTGGCACTGTCCTACCACCTGAGCCGG TCTGTGGCCTCCTGGTGGCACTATCCTACCACCTGAGCCGG < 41bp 1 0.0698792169374027 1 0.361160039901733 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65392705 chr11:65392707 synonymous SNV . 0 23 hm5C_associated_SNPs_40766 0 0 1 0 2 PCNX3 chr11:65392642 3'AG 65392642 Downstream 66bp
chr11 65392707 65392707 1 + G A UCEC 65392705 + 65392685 65392725 41 TCTGTGGCCTCCTGGTGGCACTGTCCTACCACCTGAGCCGG TCTGTGGCCTCCTGGTGGCACTATCCTACCACCTGAGCCGG < 41bp 1 0.0698792169374027 1 0.361160039901733 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65392705 chr11:65392707 synonymous SNV . 0 23 hm5C_associated_SNPs_40766 0 0 1 0 2 PCNX3 chr11:65392751 5'GT 65392751 Upstream 45bp
chr19 39948357 39948357 1 + G T UCEC 39948343 + 39948323 39948363 41 GATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA GATGAGTATGAGGACGAGGACCAGTGGGAGGATGTAGCAGA < 41bp 1 0.284043027411704 1 0.192401140928268 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948343 chr19:39948357 nonsynonymous SNV 0.998 3 35 hm5C_associated_SNPs_40770 0 0 1 0 2 SUPT5H chr19:39948315 3'AG 39948315 Downstream 43bp
chr19 39948357 39948357 1 + G T UCEC 39948343 + 39948323 39948363 41 GATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA GATGAGTATGAGGACGAGGACCAGTGGGAGGATGTAGCAGA < 41bp 1 0.284043027411704 1 0.192401140928268 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948343 chr19:39948357 nonsynonymous SNV 0.998 3 35 hm5C_associated_SNPs_40770 0 0 1 0 2 SUPT5H chr19:39948380 5'GT 39948380 Upstream 24bp
chr19 39948357 39948357 1 + G T UCEC 39948344 + 39948324 39948364 41 ATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGAG ATGAGTATGAGGACGAGGACCAGTGGGAGGATGTAGCAGAG < 41bp 1 0.529704688518855 1 0.217215031385422 experiment 0.94059062296229 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948344 chr19:39948357 nonsynonymous SNV 0.998 3 34 hm5C_associated_SNPs_40771 0 0 1 0 2 SUPT5H chr19:39948315 3'AG 39948315 Downstream 43bp
chr19 39948357 39948357 1 + G T UCEC 39948344 + 39948324 39948364 41 ATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGAG ATGAGTATGAGGACGAGGACCAGTGGGAGGATGTAGCAGAG < 41bp 1 0.529704688518855 1 0.217215031385422 experiment 0.94059062296229 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948344 chr19:39948357 nonsynonymous SNV 0.998 3 34 hm5C_associated_SNPs_40771 0 0 1 0 2 SUPT5H chr19:39948380 5'GT 39948380 Upstream 24bp
chr19 39948357 39948357 1 + G T UCEC 39948360 + 39948340 39948380 41 GGACCAGTGGGAGGATGGAGCAGAGGACATTCTAGAGAAAG GGACCAGTGGGAGGATGTAGCAGAGGACATTCTAGAGAAAG < 41bp 1 0.677715128442979 1 0.866448283195496 experiment 0.644569743114042 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948360 chr19:39948357 nonsynonymous SNV 0.998 3 18 hm5C_associated_SNPs_40772 0 0 1 0 2 SUPT5H chr19:39948315 3'AG 39948315 Downstream 43bp
chr19 39948357 39948357 1 + G T UCEC 39948360 + 39948340 39948380 41 GGACCAGTGGGAGGATGGAGCAGAGGACATTCTAGAGAAAG GGACCAGTGGGAGGATGTAGCAGAGGACATTCTAGAGAAAG < 41bp 1 0.677715128442979 1 0.866448283195496 experiment 0.644569743114042 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948360 chr19:39948357 nonsynonymous SNV 0.998 3 18 hm5C_associated_SNPs_40772 0 0 1 0 2 SUPT5H chr19:39948380 5'GT 39948380 Upstream 24bp
chr19 39948357 39948357 1 + G T UCEC 39948367 + 39948347 39948387 41 TGGGAGGATGGAGCAGAGGACATTCTAGAGAAAGGTGTGTG TGGGAGGATGTAGCAGAGGACATTCTAGAGAAAGGTGTGTG < 41bp 1 0.0451336935137352 1 0.0523582398891449 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948367 chr19:39948357 nonsynonymous SNV 0.998 3 11 hm5C_associated_SNPs_40773 0 0 1 0 2 SUPT5H chr19:39948315 3'AG 39948315 Downstream 43bp
chr19 39948357 39948357 1 + G T UCEC 39948367 + 39948347 39948387 41 TGGGAGGATGGAGCAGAGGACATTCTAGAGAAAGGTGTGTG TGGGAGGATGTAGCAGAGGACATTCTAGAGAAAGGTGTGTG < 41bp 1 0.0451336935137352 1 0.0523582398891449 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948367 chr19:39948357 nonsynonymous SNV 0.998 3 11 hm5C_associated_SNPs_40773 0 0 1 0 2 SUPT5H chr19:39948380 5'GT 39948380 Upstream 24bp
chr7 77227175 77227175 1 + G A UCEC 77227168 + 77227148 77227188 41 TCTTTATTTAGGAGGATGAACAAGCAAGAACAGACTACTTC TCTTTATTTAGGAGGATGAACAAGCAAAAACAGACTACTTC < 41bp 1 0.359236608619021 1 0.327237993478775 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77227168 chr7:77227175 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_40774 0 0 1 0 2 PTPN12 chr7:77227159 3'AG 77227159 Downstream 17bp
chr7 77227175 77227175 1 + G A UCEC 77227168 + 77227148 77227188 41 TCTTTATTTAGGAGGATGAACAAGCAAGAACAGACTACTTC TCTTTATTTAGGAGGATGAACAAGCAAAAACAGACTACTTC < 41bp 1 0.359236608619021 1 0.327237993478775 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77227168 chr7:77227175 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_40774 0 0 1 0 2 PTPN12 chr7:77227218 5'GT 77227218 Upstream 44bp
chr16 28845676 28845676 1 + T C UCEC 28845668 + 28845648 28845688 41 GTGTCCTCATCCCCAGGCACCTCAGATGTATCCATATCCTG GTGTCCTCATCCCCAGGCACCTCAGATGCATCCATATCCTG < 41bp 1 0.308279158115565 1 0.0719198286533356 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28845668 chr16:28845676 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_40775 0 0 1 0 2 ATXN2L chr16:28845664 3'AG 28845664 Downstream 13bp
chr16 28845676 28845676 1 + T C UCEC 28845668 + 28845648 28845688 41 GTGTCCTCATCCCCAGGCACCTCAGATGTATCCATATCCTG GTGTCCTCATCCCCAGGCACCTCAGATGCATCCATATCCTG < 41bp 1 0.308279158115565 1 0.0719198286533356 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28845668 chr16:28845676 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_40775 0 0 1 0 2 ATXN2L chr16:28845736 5'GT 28845736 Upstream 61bp
chr17 78359417 78359417 1 + G A UCEC 78359407 + 78359387 78359427 41 ATGGAACAAACTGAGGAGATCGCTTGAGACGAACGGTTAGT ATGGAACAAACTGAGGAGATCGCTTGAGACAAACGGTTAGT < 41bp 1 0.0458148223299869 1 0.319346338510513 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78359407 chr17:78359417 synonymous SNV . 0 31 hm5C_associated_SNPs_40776 0 0 1 0 2 RNF213 chr17:78359338 3'AG 78359338 Downstream 80bp
chr17 78359417 78359417 1 + G A UCEC 78359407 + 78359387 78359427 41 ATGGAACAAACTGAGGAGATCGCTTGAGACGAACGGTTAGT ATGGAACAAACTGAGGAGATCGCTTGAGACAAACGGTTAGT < 41bp 1 0.0458148223299869 1 0.319346338510513 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78359407 chr17:78359417 synonymous SNV . 0 31 hm5C_associated_SNPs_40776 0 0 1 0 2 RNF213 chr17:78359421 5'GT 78359421 Upstream 5bp
chr2 219677656 219677656 1 + T G UCEC 219677655 + 219677635 219677675 41 TTGCTTTCACAGGGAAGAAGCTGATTGATGAGAAGCTCGAA TTGCTTTCACAGGGAAGAAGCGGATTGATGAGAAGCTCGAA < 41bp 1 0.367390752472689 1 0.430353313684464 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219677655 chr2:219677656 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_40777 0 0 1 0 1 CYP27A1 chr2:219677647 3'AG 219677647 Downstream 10bp
chr17 27011946 27011946 1 + A G UCEC 27011928 + 27011908 27011948 41 ACAGACTTCCTTCGACTGCCCCATTTTACCAAACGGCGAAC ACAGACTTCCTTCGACTGCCCCATTTTACCAAACGGCGGAC < 41bp 1 0.0877644935192354 1 0.0416757464408875 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27011928 chr17:27011946 synonymous SNV . 0 39 hm5C_associated_SNPs_40778 0 0 1 0 1 SUPT6H chr17:27011862 3'AG 27011862 Downstream 85bp
chr17 27011946 27011946 1 + A G UCEC 27011948 + 27011928 27011968 41 CCATTTTACCAAACGGCGAACTGCATGGAGAGAGGAAGAGC CCATTTTACCAAACGGCGGACTGCATGGAGAGAGGAAGAGC < 41bp 1 0.517869679979468 1 0.701994597911835 experiment 0.964260640041064 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27011948 chr17:27011946 synonymous SNV . 0 19 hm5C_associated_SNPs_40779 0 0 1 0 1 SUPT6H chr17:27011862 3'AG 27011862 Downstream 85bp
chr9 96411441 96411441 1 + C T UCEC 96411460 + 96411440 96411480 41 GCACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCGAG GTACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCGAG < 41bp 1 0.468640345931913 1 0.40632763504982 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96411460 chr9:96411441 synonymous SNV . 0 2 hm5C_associated_SNPs_40780 0 0 1 0 2 PHF2 chr9:96411353 3'AG 96411353 Downstream 89bp
chr9 96411441 96411441 1 + C T UCEC 96411460 + 96411440 96411480 41 GCACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCGAG GTACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCGAG < 41bp 1 0.468640345931913 1 0.40632763504982 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96411460 chr9:96411441 synonymous SNV . 0 2 hm5C_associated_SNPs_40780 0 0 1 0 2 PHF2 chr9:96411494 5'GT 96411494 Upstream 54bp
chr17 40714711 40714711 1 + C T UCEC 40714704 + 40714684 40714724 41 TGGCCTCCCTAGCCCCTCGCCTGGCCTCCATCCTGACCTCG TGGCCTCCCTAGCCCCTCGCCTGGCCTTCATCCTGACCTCG < 41bp 1 0.520797853113 1 0.288163483142853 experiment 0.958404293774 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COASY ENSG00000068120 CDS Human protein_coding chr17:40714704 chr17:40714711 nonsynonymous SNV 0.935 2 28 hm5C_associated_SNPs_40781 0 0 1 0 1 COASY chr17:40714630 3'AG 40714630 Downstream 82bp
chr10 72294246 72294246 1 + G A UCEC 72294256 + 72294236 72294276 41 AGCTTTCTCCGCATGGTGCCCCAGGGAAGGAGGATGGTGGA AGCTTTCTCCACATGGTGCCCCAGGGAAGGAGGATGGTGGA < 41bp 1 0.282241529828509 1 0.728201508522034 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72294256 chr10:72294246 nonsynonymous SNV 0.390 0 11 hm5C_associated_SNPs_40782 0 0 0 0 2 PALD1 chr10:72294181 3'AG 72294181 Downstream 66bp
chr10 72294246 72294246 1 + G A UCEC 72294256 + 72294236 72294276 41 AGCTTTCTCCGCATGGTGCCCCAGGGAAGGAGGATGGTGGA AGCTTTCTCCACATGGTGCCCCAGGGAAGGAGGATGGTGGA < 41bp 1 0.282241529828509 1 0.728201508522034 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72294256 chr10:72294246 nonsynonymous SNV 0.390 0 11 hm5C_associated_SNPs_40782 0 0 0 0 2 PALD1 chr10:72294280 5'GT 72294280 Upstream 35bp
chr12 123466335 123466335 1 + G T UCEC 123466332 + 123466312 123466352 41 AAGAAGCTGAAGAAGAAGGGCAAGGAGAAGGCGGAAGCACA AAGAAGCTGAAGAAGAAGGGCAATGAGAAGGCGGAAGCACA < 41bp 1 0.135709195688634 1 0.140558302402496 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ARL6IP4 ENSG00000182196 CDS Human protein_coding chr12:123466332 chr12:123466335 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_40785 0 0 1 0 2 ARL6IP4 chr12:123466356 5'GT 123466356 Upstream 22bp
chr12 123466335 123466335 1 + G T UCEC 123466332 + 123466312 123466352 41 AAGAAGCTGAAGAAGAAGGGCAAGGAGAAGGCGGAAGCACA AAGAAGCTGAAGAAGAAGGGCAATGAGAAGGCGGAAGCACA < 41bp 1 0.135709195688634 1 0.140558302402496 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ARL6IP4 ENSG00000182196 CDS Human protein_coding chr12:123466332 chr12:123466335 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_40785 0 0 1 0 2 ARL6IP4 chr12:123466426 5'GT 123466426 Upstream 92bp
chr11 45882561 45882561 1 + C T UCEC 45882565 + 45882545 45882585 41 ACGACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGT ACGACGAGACCTACGGTGTGCCCTCCCTGGAGGAGCTGGGT < 41bp 1 0.0323743179434933 1 0.0332527458667755 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45882565 chr11:45882561 synonymous SNV . 0 17 hm5C_associated_SNPs_40786 0 0 1 0 1 CRY2 chr11:45882583 5'GT 45882583 Upstream 23bp
chr11 45882561 45882561 1 + C T UCEC 45882566 + 45882546 45882586 41 CGACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGTG CGACGAGACCTACGGTGTGCCCTCCCTGGAGGAGCTGGGTG < 41bp 1 0.0480477024650461 1 0.0466641783714294 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45882566 chr11:45882561 synonymous SNV . 0 16 hm5C_associated_SNPs_40787 0 0 1 0 1 CRY2 chr11:45882583 5'GT 45882583 Upstream 23bp
chr19 39944012 39944012 1 + G A UCEC 39944021 + 39944001 39944041 41 CGAAGAGCGGCGGAGTGCAGCGGGCAGTGAGAAAGAAGAAG CGAAGAGCGGCAGAGTGCAGCGGGCAGTGAGAAAGAAGAAG < 41bp 1 0.576859388457796 1 0.850392460823059 experiment 0.846281223084407 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944021 chr19:39944012 nonsynonymous SNV 0.827 1 12 hm5C_associated_SNPs_40789 0 0 1 0 1 SUPT5H chr19:39943996 3'AG 39943996 Downstream 17bp
chr19 39944012 39944012 1 + G A UCEC 39944025 + 39944005 39944045 41 GAGCGGCGGAGTGCAGCGGGCAGTGAGAAAGAAGAAGAGCC GAGCGGCAGAGTGCAGCGGGCAGTGAGAAAGAAGAAGAGCC < 41bp 1 0.322095384275617 1 0.377170979976654 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944025 chr19:39944012 nonsynonymous SNV 0.827 1 8 hm5C_associated_SNPs_40790 0 0 1 0 1 SUPT5H chr19:39943996 3'AG 39943996 Downstream 17bp
chr6 155154527 155154527 1 + T C UCEC 155154525 + 155154505 155154545 41 AAGCACAGAAACTGAGGGGACATAATCATCACTCAGTAGGT AAGCACAGAAACTGAGGGGACACAATCATCACTCAGTAGGT < 41bp 1 0.357933100650755 1 0.276166796684265 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SCAF8 ENSG00000213079 CDS Human other chr6:155154525 chr6:155154527 stoploss 1.000 0 23 hm5C_associated_SNPs_40791 0 0 1 0 1 SCAF8 chr6:155154543 5'GT 155154543 Upstream 17bp
chr4 1806243 1806243 1 + G A UCEC 1806242 + 1806222 1806262 41 TCTCCCGCTTCCCGCTCAAGCGACAGGTAACAGAAAGTAGA TCTCCCGCTTCCCGCTCAAGCAACAGGTAACAGAAAGTAGA < 41bp 1 0.54136770529949 1 0.531539916992188 experiment 0.91726458940102 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1806242 chr4:1806243 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_40792 1 0 0 0 1 FGFR3 chr4:1806247 5'GT 1806247 Upstream 5bp
chr7 150769170 150769170 1 + G A UCEC 150769166 + 150769146 150769186 41 TCCCGCTTCACCCAGGAGATCTTCGCCTTCTTGATCTCACT TCCCGCTTCACCCAGGAGATCTTCACCTTCTTGATCTCACT < 41bp 1 0.116237424840985 1 0.0549403727054596 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150769166 chr7:150769170 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_40793 0 0 1 0 1 SLC4A2 chr7:150769223 5'GT 150769223 Upstream 54bp
chr17 18137994 18137994 1 + T G UCEC 18138006 + 18137986 18138026 41 AACAAGATTCTGTGGCGGAACTGTGAATCTGGGTAGGTCGA AACAAGATGCTGTGGCGGAACTGTGAATCTGGGTAGGTCGA < 41bp 1 0.304845109998648 1 0.492230206727982 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18138006 chr17:18137994 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_40794 0 0 1 0 2 LLGL1 chr17:18137963 3'AG 18137963 Downstream 32bp
chr17 18137994 18137994 1 + T G UCEC 18138006 + 18137986 18138026 41 AACAAGATTCTGTGGCGGAACTGTGAATCTGGGTAGGTCGA AACAAGATGCTGTGGCGGAACTGTGAATCTGGGTAGGTCGA < 41bp 1 0.304845109998648 1 0.492230206727982 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18138006 chr17:18137994 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_40794 0 0 1 0 2 LLGL1 chr17:18138017 5'GT 18138017 Upstream 24bp
chr17 80529646 80529646 1 + C T UCEC 80529633 + 80529613 80529653 41 CGCCTTACTCCTACGCGCAGCTGATAGTTCAGGCGATTACG CGCCTTACTCCTACGCGCAGCTGATAGTTCAGGTGATTACG < 41bp 1 0.0837909712623568 1 0.0493823885917664 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80529633 chr17:80529646 nonsynonymous SNV 0.488 5 34 hm5C_associated_SNPs_40795 0 0 1 0 1 FOXK2 chr17:80529600 3'AG 80529600 Downstream 47bp
chr20 49197898 49197898 1 + C T UCEC 49197914 + 49197894 49197934 41 TGCCCGAGAAGGACGAGGACCATGCACTGAGTTACTGGAAG TGCCTGAGAAGGACGAGGACCATGCACTGAGTTACTGGAAG < 41bp 1 0.147973924630013 1 0.274630486965179 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49197914 chr20:49197898 synonymous SNV . 0 5 hm5C_associated_SNPs_40797 0 0 1 0 1 PTPN1 chr20:49197802 3'AG 49197802 Downstream 97bp
chr15 64410413 64410413 1 + T G UCEC 64410406 + 64410386 64410426 41 TTCTCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCC TTCTCTTCCTCCTCAGGAAGCCACAAAGTCTTCGAAGCCCC < 41bp 1 0.263900219258328 1 0.174763232469559 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410406 chr15:64410413 nonsynonymous SNV 0.972 0 28 hm5C_associated_SNPs_40799 0 0 1 0 3 SNX1 chr15:64410316 3'AG 64410316 Downstream 98bp
chr15 64410413 64410413 1 + T G UCEC 64410406 + 64410386 64410426 41 TTCTCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCC TTCTCTTCCTCCTCAGGAAGCCACAAAGTCTTCGAAGCCCC < 41bp 1 0.263900219258328 1 0.174763232469559 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410406 chr15:64410413 nonsynonymous SNV 0.972 0 28 hm5C_associated_SNPs_40799 0 0 1 0 3 SNX1 chr15:64410402 3'AG 64410402 Downstream 12bp
chr15 64410413 64410413 1 + T G UCEC 64410406 + 64410386 64410426 41 TTCTCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCC TTCTCTTCCTCCTCAGGAAGCCACAAAGTCTTCGAAGCCCC < 41bp 1 0.263900219258328 1 0.174763232469559 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410406 chr15:64410413 nonsynonymous SNV 0.972 0 28 hm5C_associated_SNPs_40799 0 0 1 0 3 SNX1 chr15:64410443 5'GT 64410443 Upstream 31bp
chr15 64410413 64410413 1 + T G UCEC 64410409 + 64410389 64410429 41 TCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCCAGC TCTTCCTCCTCAGGAAGCCACAAAGTCTTCGAAGCCCCAGC < 41bp 1 0.338281142746099 1 0.574059844017029 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410409 chr15:64410413 nonsynonymous SNV 0.972 0 25 hm5C_associated_SNPs_40800 0 0 1 0 3 SNX1 chr15:64410316 3'AG 64410316 Downstream 98bp
chr15 64410413 64410413 1 + T G UCEC 64410409 + 64410389 64410429 41 TCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCCAGC TCTTCCTCCTCAGGAAGCCACAAAGTCTTCGAAGCCCCAGC < 41bp 1 0.338281142746099 1 0.574059844017029 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410409 chr15:64410413 nonsynonymous SNV 0.972 0 25 hm5C_associated_SNPs_40800 0 0 1 0 3 SNX1 chr15:64410402 3'AG 64410402 Downstream 12bp
chr15 64410413 64410413 1 + T G UCEC 64410409 + 64410389 64410429 41 TCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCCAGC TCTTCCTCCTCAGGAAGCCACAAAGTCTTCGAAGCCCCAGC < 41bp 1 0.338281142746099 1 0.574059844017029 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410409 chr15:64410413 nonsynonymous SNV 0.972 0 25 hm5C_associated_SNPs_40800 0 0 1 0 3 SNX1 chr15:64410443 5'GT 64410443 Upstream 31bp
chr12 50480641 50480641 1 + G A UCEC 50480623 + 50480603 50480643 41 ACCAGACTATCATGAGGAAACGGCTAGATATCCAAGAGGCC ACCAGACTATCATGAGGAAACGGCTAGATATCCAAGAGACC < 41bp 1 0.357491729733162 1 0.289781153202057 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMARCD1 ENSG00000066117 CDS Human protein_coding chr12:50480623 chr12:50480641 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_40803 0 0 1 0 1 SMARCD1 chr12:50480661 5'GT 50480661 Upstream 21bp
chr9 130420674 130420674 1 + C T UCEC 130420683 + 130420663 130420703 41 ATATCAATAAGCGCAGAGAGCCGCTCCCCAGCCTGGAGGCT ATATCAATAAGTGCAGAGAGCCGCTCCCCAGCCTGGAGGCT < 41bp 1 0.0948721698619646 1 0.0952309966087341 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130420683 chr9:130420674 nonsynonymous SNV 0.995 3 12 hm5C_associated_SNPs_40804 0 0 1 0 2 STXBP1 chr9:130420654 3'AG 130420654 Downstream 21bp
chr9 130420674 130420674 1 + C T UCEC 130420683 + 130420663 130420703 41 ATATCAATAAGCGCAGAGAGCCGCTCCCCAGCCTGGAGGCT ATATCAATAAGTGCAGAGAGCCGCTCCCCAGCCTGGAGGCT < 41bp 1 0.0948721698619646 1 0.0952309966087341 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130420683 chr9:130420674 nonsynonymous SNV 0.995 3 12 hm5C_associated_SNPs_40804 0 0 1 0 2 STXBP1 chr9:130420730 5'GT 130420730 Upstream 57bp
chr10 73562753 73562753 1 + G A UCEC 73562773 + 73562753 73562793 41 GGTCATCACCATGATGGCCACTGACCAGGATGAAGGTCCCA AGTCATCACCATGATGGCCACTGACCAGGATGAAGGTCCCA < 41bp 1 0.0862959070468748 1 0.0860834717750549 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH23 ENSG00000107736 CDS Human protein_coding chr10:73562773 chr10:73562753 synonymous SNV . 0 1 hm5C_associated_SNPs_40805 0 0 0 0 2 CDH23 chr10:73562655 3'AG 73562655 Downstream 99bp
chr10 73562753 73562753 1 + G A UCEC 73562773 + 73562753 73562793 41 GGTCATCACCATGATGGCCACTGACCAGGATGAAGGTCCCA AGTCATCACCATGATGGCCACTGACCAGGATGAAGGTCCCA < 41bp 1 0.0862959070468748 1 0.0860834717750549 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH23 ENSG00000107736 CDS Human protein_coding chr10:73562773 chr10:73562753 synonymous SNV . 0 1 hm5C_associated_SNPs_40805 0 0 0 0 2 CDH23 chr10:73562832 5'GT 73562832 Upstream 80bp
chrX 69639541 69639541 1 + G T UCEC 69639552 + 69639532 69639572 41 CGGACCCAGGATTCCGAAGGCTCCTTCAAACTGGAGGATCC CGGACCCAGTATTCCGAAGGCTCCTTCAAACTGGAGGATCC < 41bp 1 0.307855501170317 1 0.342208862304688 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639552 chrX:69639541 nonsynonymous SNV 0.981 2 10 hm5C_associated_SNPs_40807 0 0 1 0 2 KIF4A chrX:69639511 3'AG 69639511 Downstream 31bp
chrX 69639541 69639541 1 + G T UCEC 69639552 + 69639532 69639572 41 CGGACCCAGGATTCCGAAGGCTCCTTCAAACTGGAGGATCC CGGACCCAGTATTCCGAAGGCTCCTTCAAACTGGAGGATCC < 41bp 1 0.307855501170317 1 0.342208862304688 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639552 chrX:69639541 nonsynonymous SNV 0.981 2 10 hm5C_associated_SNPs_40807 0 0 1 0 2 KIF4A chrX:69639633 5'GT 69639633 Upstream 93bp
chr17 38249485 38249485 1 + G T UCEC 38249489 + 38249469 38249509 41 CGAAGAGCCCGCAGCAGCGTCTCCTGGAGCTGCTCCACCGA CGAAGAGCCCGCAGCATCGTCTCCTGGAGCTGCTCCACCGA < 41bp 1 0.637492151414814 1 0.748814105987549 experiment 0.725015697170373 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NR1D1;THRA ENSG00000126351;ENSG00000126368 CDS Human other chr17:38249489 chr17:38249485 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_40808 0 0 0 0 1 NR1D1;THRA chr17:38249390 3'AG 38249390 Downstream 96bp
chr5 134099692 134099692 1 + G A UCEC 134099676 + 134099656 134099696 41 CCTCAGACAAAAGAAGTAAACGTGGAGATGACAGACGGTCT CCTCAGACAAAAGAAGTAAACGTGGAGATGACAGACAGTCT < 41bp 1 0.722466257790849 1 0.664348006248474 experiment 0.555067484418301 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DDX46 ENSG00000145833 CDS Human protein_coding chr5:134099676 chr5:134099692 nonsynonymous SNV 0.989 2 37 hm5C_associated_SNPs_40809 0 0 1 0 2 DDX46 chr5:134099594 3'AG 134099594 Downstream 99bp
chr5 134099692 134099692 1 + G A UCEC 134099676 + 134099656 134099696 41 CCTCAGACAAAAGAAGTAAACGTGGAGATGACAGACGGTCT CCTCAGACAAAAGAAGTAAACGTGGAGATGACAGACAGTCT < 41bp 1 0.722466257790849 1 0.664348006248474 experiment 0.555067484418301 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DDX46 ENSG00000145833 CDS Human protein_coding chr5:134099676 chr5:134099692 nonsynonymous SNV 0.989 2 37 hm5C_associated_SNPs_40809 0 0 1 0 2 DDX46 chr5:134099782 5'GT 134099782 Upstream 91bp
chr5 134099692 134099692 1 + G A UCEC 134099687 + 134099667 134099707 41 AGAAGTAAACGTGGAGATGACAGACGGTCTAGAAGTAGAGA AGAAGTAAACGTGGAGATGACAGACAGTCTAGAAGTAGAGA < 41bp 1 0.446685003632258 1 0.163330644369125 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134099687 chr5:134099692 nonsynonymous SNV 0.989 2 26 hm5C_associated_SNPs_40810 0 0 1 0 2 DDX46 chr5:134099594 3'AG 134099594 Downstream 99bp
chr5 134099692 134099692 1 + G A UCEC 134099687 + 134099667 134099707 41 AGAAGTAAACGTGGAGATGACAGACGGTCTAGAAGTAGAGA AGAAGTAAACGTGGAGATGACAGACAGTCTAGAAGTAGAGA < 41bp 1 0.446685003632258 1 0.163330644369125 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134099687 chr5:134099692 nonsynonymous SNV 0.989 2 26 hm5C_associated_SNPs_40810 0 0 1 0 2 DDX46 chr5:134099782 5'GT 134099782 Upstream 91bp
chr5 134099692 134099692 1 + G A UCEC 134099691 + 134099671 134099711 41 GTAAACGTGGAGATGACAGACGGTCTAGAAGTAGAGATAGA GTAAACGTGGAGATGACAGACAGTCTAGAAGTAGAGATAGA < 41bp 1 0.320766171637632 1 0.453195571899414 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DDX46 ENSG00000145833 CDS Human protein_coding chr5:134099691 chr5:134099692 nonsynonymous SNV 0.989 2 22 hm5C_associated_SNPs_40811 0 0 1 0 2 DDX46 chr5:134099594 3'AG 134099594 Downstream 99bp
chr5 134099692 134099692 1 + G A UCEC 134099691 + 134099671 134099711 41 GTAAACGTGGAGATGACAGACGGTCTAGAAGTAGAGATAGA GTAAACGTGGAGATGACAGACAGTCTAGAAGTAGAGATAGA < 41bp 1 0.320766171637632 1 0.453195571899414 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DDX46 ENSG00000145833 CDS Human protein_coding chr5:134099691 chr5:134099692 nonsynonymous SNV 0.989 2 22 hm5C_associated_SNPs_40811 0 0 1 0 2 DDX46 chr5:134099782 5'GT 134099782 Upstream 91bp
chr3 188242461 188242461 1 + C T UCEC 188242472 + 188242452 188242492 41 GGGGAATCCCGGAGGCAAGACACTTGAGGAGAGGCGCTCCA GGGGAATCCTGGAGGCAAGACACTTGAGGAGAGGCGCTCCA < 41bp 1 0.179251537034509 1 0.0409992039203644 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LPP ENSG00000145012 CDS Human protein_coding chr3:188242472 chr3:188242461 synonymous SNV . 0 10 hm5C_associated_SNPs_40812 0 0 1 0 1 LPP chr3:188242453 3'AG 188242453 Downstream 9bp
chr16 90030973 90030973 1 + G A UCEC 90030968 + 90030948 90030988 41 GTCTGTGTGCGCCGACTGCTCCGCGGTCTTCCACAGGTGGG GTCTGTGTGCGCCGACTGCTCCGCGATCTTCCACAGGTGGG < 41bp 1 0.76157541779284 1 0.158047765493393 experiment 0.47684916441432 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90030968 chr16:90030973 nonsynonymous SNV 0.624 3 26 hm5C_associated_SNPs_40814 0 0 0 0 2 DEF8 chr16:90030874 3'AG 90030874 Downstream 100bp
chr16 90030973 90030973 1 + G A UCEC 90030968 + 90030948 90030988 41 GTCTGTGTGCGCCGACTGCTCCGCGGTCTTCCACAGGTGGG GTCTGTGTGCGCCGACTGCTCCGCGATCTTCCACAGGTGGG < 41bp 1 0.76157541779284 1 0.158047765493393 experiment 0.47684916441432 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90030968 chr16:90030973 nonsynonymous SNV 0.624 3 26 hm5C_associated_SNPs_40814 0 0 0 0 2 DEF8 chr16:90030983 5'GT 90030983 Upstream 11bp
chr1 28862534 28862534 1 + G T UCEC 28862519 + 28862499 28862539 41 CACGTGTACGGCTTCGGCCTCTCCAACTACCATCAGCTTGG CACGTGTACGGCTTCGGCCTCTCCAACTACCATCATCTTGG < 41bp 1 0.702408126943619 1 0.897602379322052 experiment 0.595183746112763 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28862519 chr1:28862534 nonsynonymous SNV 0.995 3 36 hm5C_associated_SNPs_40815 0 0 1 0 1 RCC1 chr1:28862538 5'GT 28862538 Upstream 5bp
chrX 153627880 153627880 1 + G A UCEC 153627896 + 153627876 153627916 41 ATGAGTTTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT ATGAATTTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT < 41bp 1 0.251642852405071 1 0.523244261741638 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627896 chrX:153627880 synonymous SNV . 0 5 hm5C_associated_SNPs_40816 0 0 1 0 2 RPL10 chrX:153627828 3'AG 153627828 Downstream 53bp
chrX 153627880 153627880 1 + G A UCEC 153627896 + 153627876 153627916 41 ATGAGTTTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT ATGAATTTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT < 41bp 1 0.251642852405071 1 0.523244261741638 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627896 chrX:153627880 synonymous SNV . 0 5 hm5C_associated_SNPs_40816 0 0 1 0 2 RPL10 chrX:153627935 5'GT 153627935 Upstream 56bp
chr14 75359606 75359606 1 + C T UCEC 75359614 + 75359594 75359634 41 AACCTACAGCAGCGGCAGTTCCTCCCCCTGCAGCACCCATA AACCTACAGCAGTGGCAGTTCCTCCCCCTGCAGCACCCATA < 41bp 1 0.127526255745131 1 0.203304588794708 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DLST ENSG00000119689 CDS Human protein_coding chr14:75359614 chr14:75359606 nonsynonymous SNV 0.001 0 13 hm5C_associated_SNPs_40819 0 0 1 0 2 DLST chr14:75359537 3'AG 75359537 Downstream 70bp
chr14 75359606 75359606 1 + C T UCEC 75359614 + 75359594 75359634 41 AACCTACAGCAGCGGCAGTTCCTCCCCCTGCAGCACCCATA AACCTACAGCAGTGGCAGTTCCTCCCCCTGCAGCACCCATA < 41bp 1 0.127526255745131 1 0.203304588794708 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DLST ENSG00000119689 CDS Human protein_coding chr14:75359614 chr14:75359606 nonsynonymous SNV 0.001 0 13 hm5C_associated_SNPs_40819 0 0 1 0 2 DLST chr14:75359689 5'GT 75359689 Upstream 84bp
chr20 34776333 34776333 1 + G A UCEC 34776322 + 34776302 34776342 41 TGTGCCAATGGCCTGCTCATCTACCGGGACCGGCTGAGAAT TGTGCCAATGGCCTGCTCATCTACCGGGACCAGCTGAGAAT < 41bp 1 0.364598953890169 1 0.166020840406418 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPB41L1 ENSG00000088367 CDS Human protein_coding chr20:34776322 chr20:34776333 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_40820 0 0 1 0 2 EPB41L1 chr20:34776269 3'AG 34776269 Downstream 65bp
chr20 34776333 34776333 1 + G A UCEC 34776322 + 34776302 34776342 41 TGTGCCAATGGCCTGCTCATCTACCGGGACCGGCTGAGAAT TGTGCCAATGGCCTGCTCATCTACCGGGACCAGCTGAGAAT < 41bp 1 0.364598953890169 1 0.166020840406418 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPB41L1 ENSG00000088367 CDS Human protein_coding chr20:34776322 chr20:34776333 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_40820 0 0 1 0 2 EPB41L1 chr20:34776421 5'GT 34776421 Upstream 89bp
chr1 29651769 29651769 1 + C T UCEC 29651781 + 29651761 29651801 41 CGCTGCCACAACTTGGTGGACGTTTTCTTTGCTGCCAAAAC CGCTGCCATAACTTGGTGGACGTTTTCTTTGCTGCCAAAAC < 41bp 1 0.0454215856983926 1 0.0421985983848572 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPRU ENSG00000060656 CDS Human protein_coding chr1:29651781 chr1:29651769 synonymous SNV . 0 9 hm5C_associated_SNPs_40822 0 0 1 0 2 PTPRU chr1:29651703 3'AG 29651703 Downstream 67bp
chr1 29651769 29651769 1 + C T UCEC 29651781 + 29651761 29651801 41 CGCTGCCACAACTTGGTGGACGTTTTCTTTGCTGCCAAAAC CGCTGCCATAACTTGGTGGACGTTTTCTTTGCTGCCAAAAC < 41bp 1 0.0454215856983926 1 0.0421985983848572 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPRU ENSG00000060656 CDS Human protein_coding chr1:29651781 chr1:29651769 synonymous SNV . 0 9 hm5C_associated_SNPs_40822 0 0 1 0 2 PTPRU chr1:29651838 5'GT 29651838 Upstream 70bp
chrX 205491 205491 1 + G A UCEC 205500 + 205480 205520 41 AACAAGGCCTTGCCCTGCATCACGCGCCCTGTCGTGCTGAA AACAAGGCCTTACCCTGCATCACGCGCCCTGTCGTGCTGAA < 41bp 1 0.405765583124037 1 0.0931351780891418 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:205500 chrX:205491 synonymous SNV . 0 12 hm5C_associated_SNPs_40823 0 0 1 0 2 PLCXD1 chrX:205400 3'AG 205400 Downstream 92bp
chrX 205491 205491 1 + G A UCEC 205500 + 205480 205520 41 AACAAGGCCTTGCCCTGCATCACGCGCCCTGTCGTGCTGAA AACAAGGCCTTACCCTGCATCACGCGCCCTGTCGTGCTGAA < 41bp 1 0.405765583124037 1 0.0931351780891418 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:205500 chrX:205491 synonymous SNV . 0 12 hm5C_associated_SNPs_40823 0 0 1 0 2 PLCXD1 chrX:205536 5'GT 205536 Upstream 46bp
chr5 1036466 1036466 1 + G A UCEC 1036447 + 1036427 1036467 41 GAGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGG GAGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCAG < 41bp 1 0.21218743049096 1 0.086009293794632 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036447 chr5:1036466 nonsynonymous SNV 0.953 3 40 hm5C_associated_SNPs_40824 0 0 0 0 2 NKD2 chr5:1036372 3'AG 1036372 Downstream 95bp
chr5 1036466 1036466 1 + G A UCEC 1036447 + 1036427 1036467 41 GAGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGG GAGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCAG < 41bp 1 0.21218743049096 1 0.086009293794632 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036447 chr5:1036466 nonsynonymous SNV 0.953 3 40 hm5C_associated_SNPs_40824 0 0 0 0 2 NKD2 chr5:1036499 5'GT 1036499 Upstream 34bp
chr5 1036466 1036466 1 + G A UCEC 1036448 + 1036428 1036468 41 AGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGGG AGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCAGG < 41bp 1 0.549084153096973 1 0.142150312662125 experiment 0.901831693806054 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036448 chr5:1036466 nonsynonymous SNV 0.953 3 39 hm5C_associated_SNPs_40825 0 0 0 0 2 NKD2 chr5:1036372 3'AG 1036372 Downstream 95bp
chr5 1036466 1036466 1 + G A UCEC 1036448 + 1036428 1036468 41 AGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGGG AGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCAGG < 41bp 1 0.549084153096973 1 0.142150312662125 experiment 0.901831693806054 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036448 chr5:1036466 nonsynonymous SNV 0.953 3 39 hm5C_associated_SNPs_40825 0 0 0 0 2 NKD2 chr5:1036499 5'GT 1036499 Upstream 34bp
chr14 68191275 68191275 1 + G T UCEC 68191265 + 68191245 68191285 41 GTGGTGATCACTGGCGCCAACACGGGCATTGGCAAGGAGAC GTGGTGATCACTGGCGCCAACACGGGCATTTGCAAGGAGAC < 41bp 1 0.787536044609072 1 0.536359786987305 experiment 0.424927910781856 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RDH12 ENSG00000139988 CDS Human protein_coding chr14:68191265 chr14:68191275 nonsynonymous SNV 0.999 5 31 hm5C_associated_SNPs_40827 0 0 0 0 2 RDH12 chr14:68191190 3'AG 68191190 Downstream 86bp
chr14 68191275 68191275 1 + G T UCEC 68191265 + 68191245 68191285 41 GTGGTGATCACTGGCGCCAACACGGGCATTGGCAAGGAGAC GTGGTGATCACTGGCGCCAACACGGGCATTTGCAAGGAGAC < 41bp 1 0.787536044609072 1 0.536359786987305 experiment 0.424927910781856 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RDH12 ENSG00000139988 CDS Human protein_coding chr14:68191265 chr14:68191275 nonsynonymous SNV 0.999 5 31 hm5C_associated_SNPs_40827 0 0 0 0 2 RDH12 chr14:68191308 5'GT 68191308 Upstream 34bp
chr21 30701856 30701856 1 + G T UCEC 30701844 + 30701824 30701864 41 ATGCACAACGGATAATTTCACTGTCTCGAAATGATTTTCAG ATGCACAACGGATAATTTCACTGTCTCGAAATTATTTTCAG < 41bp 1 0.18615424874551 1 0.160888373851776 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BACH1 ENSG00000156273 CDS Human protein_coding chr21:30701844 chr21:30701856 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_40828 0 0 1 0 1 BACH1 chr21:30701808 3'AG 30701808 Downstream 49bp
chr12 54741614 54741614 1 + A C UCEC 54741594 + 54741574 54741614 41 TGCTGGAGAACATGGAGGGGCTGTTCTTGGCTGTGGATGAA TGCTGGAGAACATGGAGGGGCTGTTCTTGGCTGTGGATGAC < 41bp 1 0.235527985289289 1 0.0965057909488678 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control COPZ1 ENSG00000111481 CDS Human protein_coding chr12:54741594 chr12:54741614 nonsynonymous SNV 0.999 4 41 hm5C_associated_SNPs_40830 0 0 1 0 1 COPZ1 chr12:54741551 3'AG 54741551 Downstream 64bp
chr12 54741614 54741614 1 + A C UCEC 54741599 + 54741579 54741619 41 GAGAACATGGAGGGGCTGTTCTTGGCTGTGGATGAAATTGT GAGAACATGGAGGGGCTGTTCTTGGCTGTGGATGACATTGT < 41bp 1 0.668352771463389 1 0.135548114776611 experiment 0.663294457073222 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control COPZ1 ENSG00000111481 CDS Human protein_coding chr12:54741599 chr12:54741614 nonsynonymous SNV 0.999 4 36 hm5C_associated_SNPs_40831 0 0 1 0 1 COPZ1 chr12:54741551 3'AG 54741551 Downstream 64bp
chr12 54741614 54741614 1 + A C UCEC 54741604 + 54741584 54741624 41 CATGGAGGGGCTGTTCTTGGCTGTGGATGAAATTGTAGATG CATGGAGGGGCTGTTCTTGGCTGTGGATGACATTGTAGATG < 41bp 1 0.712928788561178 1 0.204708456993103 experiment 0.574142422877645 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control COPZ1 ENSG00000111481 CDS Human protein_coding chr12:54741604 chr12:54741614 nonsynonymous SNV 0.999 4 31 hm5C_associated_SNPs_40832 0 0 1 0 1 COPZ1 chr12:54741551 3'AG 54741551 Downstream 64bp
chr11 119001568 119001568 1 + C T UCEC 119001554 + 119001534 119001574 41 AGCTGAAACAGTGGGGGCTGCAGGCCTTGCAAAGCCAGGCT AGCTGAAACAGTGGGGGCTGCAGGCCTTGCAAAGTCAGGCT < 41bp 1 0.669616775152656 1 0.704294264316559 experiment 0.660766449694689 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HINFP ENSG00000172273 CDS Human protein_coding chr11:119001554 chr11:119001568 synonymous SNV . 0 35 hm5C_associated_SNPs_40833 0 0 1 0 1 HINFP chr11:119001664 5'GT 119001664 Upstream 97bp
chr3 193336673 193336673 1 + C T UCEC 193336676 + 193336656 193336696 41 AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATCGTG AGGTTCTCCGGAAGAAATGGCGTTTAGAGCAACAGATCGTG < 41bp 1 0.0753029788701268 1 0.0235563814640045 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336676 chr3:193336673 nonsynonymous SNV 0.989 1 18 hm5C_associated_SNPs_40834 0 0 0 0 2 OPA1 chr3:193336658 3'AG 193336658 Downstream 16bp
chr3 193336673 193336673 1 + C T UCEC 193336676 + 193336656 193336696 41 AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATCGTG AGGTTCTCCGGAAGAAATGGCGTTTAGAGCAACAGATCGTG < 41bp 1 0.0753029788701268 1 0.0235563814640045 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336676 chr3:193336673 nonsynonymous SNV 0.989 1 18 hm5C_associated_SNPs_40834 0 0 0 0 2 OPA1 chr3:193336725 5'GT 193336725 Upstream 53bp
chr8 1806233 1806233 1 + G A UCEC 1806226 + 1806206 1806246 41 CCAGAAGCGGACAGACAGGCCCCATCCGCCCCTGAGACAGG CCAGAAGCGGACAGACAGGCCCCATCCACCCCTGAGACAGG < 41bp 1 0.09477681258586 1 0.115866780281067 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1806226 chr8:1806233 nonsynonymous SNV 0.000 0 28 hm5C_associated_SNPs_40837 0 0 1 0 1 ARHGEF10 chr8:1806281 5'GT 1806281 Upstream 49bp
chr2 33526656 33526656 1 + T C UCEC 33526650 + 33526630 33526670 41 CAGTGCAGGAACACTGAGGGCTCTTTTCAATGTGTGTGTGA CAGTGCAGGAACACTGAGGGCTCTTTCCAATGTGTGTGTGA < 41bp 1 0.101843009562702 1 0.0892471373081207 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33526650 chr2:33526656 synonymous SNV . 0 27 hm5C_associated_SNPs_40838 0 0 1 0 2 LTBP1 chr2:33526589 3'AG 33526589 Downstream 68bp
chr2 33526656 33526656 1 + T C UCEC 33526650 + 33526630 33526670 41 CAGTGCAGGAACACTGAGGGCTCTTTTCAATGTGTGTGTGA CAGTGCAGGAACACTGAGGGCTCTTTCCAATGTGTGTGTGA < 41bp 1 0.101843009562702 1 0.0892471373081207 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33526650 chr2:33526656 synonymous SNV . 0 27 hm5C_associated_SNPs_40838 0 0 1 0 2 LTBP1 chr2:33526711 5'GT 33526711 Upstream 56bp
chr2 33526656 33526656 1 + T C UCEC 33526652 + 33526632 33526672 41 GTGCAGGAACACTGAGGGCTCTTTTCAATGTGTGTGTGACC GTGCAGGAACACTGAGGGCTCTTTCCAATGTGTGTGTGACC < 41bp 1 0.0324034360265821 1 0.0837701857089996 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33526652 chr2:33526656 synonymous SNV . 0 25 hm5C_associated_SNPs_40839 0 0 1 0 2 LTBP1 chr2:33526589 3'AG 33526589 Downstream 68bp
chr2 33526656 33526656 1 + T C UCEC 33526652 + 33526632 33526672 41 GTGCAGGAACACTGAGGGCTCTTTTCAATGTGTGTGTGACC GTGCAGGAACACTGAGGGCTCTTTCCAATGTGTGTGTGACC < 41bp 1 0.0324034360265821 1 0.0837701857089996 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33526652 chr2:33526656 synonymous SNV . 0 25 hm5C_associated_SNPs_40839 0 0 1 0 2 LTBP1 chr2:33526711 5'GT 33526711 Upstream 56bp
chr6 158492640 158492640 1 + A G UCEC 158492660 + 158492640 158492680 41 AGCCATCGACACAGTGAAGACGGGCATGGGGGGCAAGGCGG GGCCATCGACACAGTGAAGACGGGCATGGGGGGCAAGGCGG < 41bp 1 0.734966677577429 1 0.625380396842957 experiment 0.530066644845143 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158492660 chr6:158492640 synonymous SNV . 0 1 hm5C_associated_SNPs_40840 0 0 1 0 1 SYNJ2 chr6:158492634 3'AG 158492634 Downstream 7bp
chr20 1905411 1905411 1 + G A UCEC 1905422 + 1905402 1905442 41 GTCCCTAGAGAACACTGGATCTAATGAACGGAACATCTATA GTCCCTAGAAAACACTGGATCTAATGAACGGAACATCTATA < 41bp 1 0.124118232282606 1 0.0427564680576324 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1905422 chr20:1905411 synonymous SNV . 0 10 hm5C_associated_SNPs_40841 0 0 0 0 1 SIRPA chr20:1905410 3'AG 1905410 Downstream 2bp
chr14 71434932 71434932 1 + G A UCEC 71434922 + 71434902 71434942 41 GTCACGTTTTCAGATTGGATCTGGTTCCTCGCGTCTTGGAA GTCACGTTTTCAGATTGGATCTGGTTCCTCACGTCTTGGAA < 41bp 1 0.181450067259427 1 0.451758801937103 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71434922 chr14:71434932 synonymous SNV . 0 31 hm5C_associated_SNPs_40842 0 0 1 0 2 PCNX1 chr14:71434915 3'AG 71434915 Downstream 18bp
chr14 71434932 71434932 1 + G A UCEC 71434922 + 71434902 71434942 41 GTCACGTTTTCAGATTGGATCTGGTTCCTCGCGTCTTGGAA GTCACGTTTTCAGATTGGATCTGGTTCCTCACGTCTTGGAA < 41bp 1 0.181450067259427 1 0.451758801937103 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71434922 chr14:71434932 synonymous SNV . 0 31 hm5C_associated_SNPs_40842 0 0 1 0 2 PCNX1 chr14:71434960 5'GT 71434960 Upstream 29bp
chr12 112926254 112926254 1 + A C UCEC 112926274 + 112926254 112926294 41 ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTTAT CTTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTTAT < 41bp 1 0.151390570175195 1 0.0162136256694794 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926274 chr12:112926254 nonsynonymous SNV 0.999 4 1 hm5C_associated_SNPs_40843 0 0 1 0 2 PTPN11 chr12:112926247 3'AG 112926247 Downstream 8bp
chr12 112926254 112926254 1 + A C UCEC 112926274 + 112926254 112926294 41 ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTTAT CTTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTTAT < 41bp 1 0.151390570175195 1 0.0162136256694794 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926274 chr12:112926254 nonsynonymous SNV 0.999 4 1 hm5C_associated_SNPs_40843 0 0 1 0 2 PTPN11 chr12:112926314 5'GT 112926314 Upstream 61bp
chr2 153494186 153494186 1 + A G UCEC 153494168 + 153494148 153494188 41 TCTTCTTTCCTGTCTTTGTCCGGTTTGTGAAAGCATATAAG TCTTCTTTCCTGTCTTTGTCCGGTTTGTGAAAGCATATGAG < 41bp 1 0.18663751799601 1 0.303786516189575 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153494168 chr2:153494186 nonsynonymous SNV 0.986 2 39 hm5C_associated_SNPs_40844 0 0 1 0 2 FMNL2 chr2:153494087 3'AG 153494087 Downstream 100bp
chr2 153494186 153494186 1 + A G UCEC 153494168 + 153494148 153494188 41 TCTTCTTTCCTGTCTTTGTCCGGTTTGTGAAAGCATATAAG TCTTCTTTCCTGTCTTTGTCCGGTTTGTGAAAGCATATGAG < 41bp 1 0.18663751799601 1 0.303786516189575 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153494168 chr2:153494186 nonsynonymous SNV 0.986 2 39 hm5C_associated_SNPs_40844 0 0 1 0 2 FMNL2 chr2:153494188 5'GT 153494188 Upstream 3bp
chr9 114296044 114296044 1 + C A UCEC 114296051 + 114296031 114296071 41 TTGAAGGATGTAGCTGTGAACTTTTCAAGAGGAGAGTGGAA TTGAAGGATGTAGATGTGAACTTTTCAAGAGGAGAGTGGAA < 41bp 1 0.0496633065535918 1 0.0326229929924011 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF483 ENSG00000173258 CDS Human protein_coding chr9:114296051 chr9:114296044 nonsynonymous SNV 0.020 0 14 hm5C_associated_SNPs_40846 0 0 1 0 1 ZNF483 chr9:114296019 3'AG 114296019 Downstream 26bp
chr5 175933841 175933841 1 + C T UCEC 175933837 + 175933817 175933857 41 CAGATTGAAGCCAATTTTCCCAGGCGAGTGCTGCCCTGCAT CAGATTGAAGCCAATTTTCCCAGGTGAGTGCTGCCCTGCAT < 41bp 1 0.777501745501496 1 0.887956142425537 experiment 0.444996508997008 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAF2 ENSG00000113194 CDS Human protein_coding chr5:175933837 chr5:175933841 stopgain 0.999 1 25 hm5C_associated_SNPs_40848 0 0 1 0 1 FAF2 chr5:175933769 3'AG 175933769 Downstream 73bp
chr5 175933841 175933841 1 + C T UCEC 175933855 + 175933835 175933875 41 CCCAGGCGAGTGCTGCCCTGCATCCCTTCAGAGGAGTGGCC CCCAGGTGAGTGCTGCCCTGCATCCCTTCAGAGGAGTGGCC < 41bp 1 0.103021394415488 1 0.0817488729953766 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAF2 ENSG00000113194 CDS Human protein_coding chr5:175933855 chr5:175933841 stopgain 0.999 1 7 hm5C_associated_SNPs_40849 0 0 1 0 1 FAF2 chr5:175933769 3'AG 175933769 Downstream 73bp
chr6 42974215 42974215 1 + C G UCEC 42974203 + 42974183 42974223 41 GGTGACTTGTTTGACCAGGCCCAGCCGCAGCCCCAGCCCCA GGTGACTTGTTTGACCAGGCCCAGCCGCAGCCGCAGCCCCA < 41bp 1 0.239428079528686 1 0.0734295248985291 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974203 chr6:42974215 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_40850 0 0 1 0 2 PPP2R5D chr6:42974184 3'AG 42974184 Downstream 32bp
chr6 42974215 42974215 1 + C G UCEC 42974203 + 42974183 42974223 41 GGTGACTTGTTTGACCAGGCCCAGCCGCAGCCCCAGCCCCA GGTGACTTGTTTGACCAGGCCCAGCCGCAGCCGCAGCCCCA < 41bp 1 0.239428079528686 1 0.0734295248985291 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974203 chr6:42974215 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_40850 0 0 1 0 2 PPP2R5D chr6:42974201 3'AG 42974201 Downstream 15bp
chr11 65402558 65402558 1 + G A UCEC 65402544 + 65402524 65402564 41 TTGCCGACATGGACCTGCTTCACCGCGTTGTGGCGCCTGGG TTGCCGACATGGACCTGCTTCACCGCGTTGTGGCACCTGGG < 41bp 1 0.230490657690006 1 0.0934309065341949 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402544 chr11:65402558 synonymous SNV . 0 35 hm5C_associated_SNPs_40851 0 0 1 0 1 PCNX3 chr11:65402591 5'GT 65402591 Upstream 34bp
chr10 89487100 89487100 1 + C T UCEC 89487114 + 89487094 89487134 41 AAGACACGGCTGGAAGGGTGCAGCAAGTTTGTCCTGGCACA AAGACATGGCTGGAAGGGTGCAGCAAGTTTGTCCTGGCACA < 41bp 1 0.77420585611858 1 0.457822531461716 experiment 0.45158828776284 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89487114 chr10:89487100 nonsynonymous SNV 0.904 3 7 hm5C_associated_SNPs_40852 0 0 0 1 1 PAPSS2 chr10:89487041 3'AG 89487041 Downstream 60bp
chr9 139848670 139848670 1 + C T UCEC 139848675 + 139848655 139848695 41 GGGCAGAGCTCAGGGCCTCTCGGATGACAACATCGTCTTCC GGGCAGAGCTCAGGGTCTCTCGGATGACAACATCGTCTTCC < 41bp 1 0.786858161375808 1 0.907059490680695 experiment 0.426283677248383 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control LCN12 ENSG00000184925 CDS Human protein_coding chr9:139848675 chr9:139848670 nonsynonymous SNV 0.024 1 16 hm5C_associated_SNPs_40856 0 0 0 0 2 LCN12 chr9:139848606 3'AG 139848606 Downstream 65bp
chr9 139848670 139848670 1 + C T UCEC 139848675 + 139848655 139848695 41 GGGCAGAGCTCAGGGCCTCTCGGATGACAACATCGTCTTCC GGGCAGAGCTCAGGGTCTCTCGGATGACAACATCGTCTTCC < 41bp 1 0.786858161375808 1 0.907059490680695 experiment 0.426283677248383 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control LCN12 ENSG00000184925 CDS Human protein_coding chr9:139848675 chr9:139848670 nonsynonymous SNV 0.024 1 16 hm5C_associated_SNPs_40856 0 0 0 0 2 LCN12 chr9:139848707 5'GT 139848707 Upstream 38bp
chr1 24996668 24996668 1 + C T UCEC 24996652 + 24996632 24996672 41 GTCTGTAAGAAGGGTCTCATCCTCCCGATCTGTCTCCGGGT GTCTGTAAGAAGGGTCTCATCCTCCCGATCTGTCTCTGGGT < 41bp 1 0.164792052211706 1 0.0508123934268951 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996652 chr1:24996668 synonymous SNV . 0 37 hm5C_associated_SNPs_40857 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 58bp
chr1 24996668 24996668 1 + C T UCEC 24996653 + 24996633 24996673 41 TCTGTAAGAAGGGTCTCATCCTCCCGATCTGTCTCCGGGTC TCTGTAAGAAGGGTCTCATCCTCCCGATCTGTCTCTGGGTC < 41bp 1 0.748481934430645 1 0.431284606456757 experiment 0.50303613113871 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996653 chr1:24996668 synonymous SNV . 0 36 hm5C_associated_SNPs_40858 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 58bp
chr1 24996668 24996668 1 + C T UCEC 24996673 + 24996653 24996693 41 CTCCCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAA CTCCCGATCTGTCTCTGGGTCTCCTGAGCCAGCAGCTAAAA < 41bp 1 0.58067506505866 1 0.0299160182476044 experiment 0.838649869882681 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996673 chr1:24996668 synonymous SNV . 0 16 hm5C_associated_SNPs_40859 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 58bp
chr1 24996668 24996668 1 + C T UCEC 24996676 + 24996656 24996696 41 CCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGC CCGATCTGTCTCTGGGTCTCCTGAGCCAGCAGCTAAAAAGC < 41bp 1 0.626494829821262 1 0.312501013278961 experiment 0.747010340357475 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996676 chr1:24996668 synonymous SNV . 0 13 hm5C_associated_SNPs_40860 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 58bp
chr1 24996668 24996668 1 + C T UCEC 24996681 + 24996661 24996701 41 CTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCA CTGTCTCTGGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCA < 41bp 1 0.289302244921278 1 0.505124926567078 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996681 chr1:24996668 synonymous SNV . 0 8 hm5C_associated_SNPs_40861 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 58bp
chr1 24996668 24996668 1 + C T UCEC 24996688 + 24996668 24996708 41 CGGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTC TGGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTC < 41bp 1 0.656668906896824 1 0.557553887367249 experiment 0.686662186206353 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996688 chr1:24996668 synonymous SNV . 0 1 hm5C_associated_SNPs_40862 0 0 1 0 1 SRRM1 chr1:24996611 3'AG 24996611 Downstream 58bp
chr16 722956 722956 1 + G A UCEC 722951 + 722931 722971 41 CATTACATGGACGGGCAGACCCCCTGCCTCTTTGTCTCCTC CATTACATGGACGGGCAGACCCCCTACCTCTTTGTCTCCTC < 41bp 1 0.307738712021278 1 0.135344386100769 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:722951 chr16:722956 nonsynonymous SNV 0.985 4 26 hm5C_associated_SNPs_40863 0 0 1 0 1 RHOT2 chr16:722928 3'AG 722928 Downstream 29bp
chr9 131847006 131847006 1 + G A UCEC 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTCAGCCCTGTATTTGTCATCGTCAGTTTCGTGACCCT < 41bp 1 0.471203206012283 1 0.371700823307037 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131847006 nonsynonymous SNV 0.539 1 28 hm5C_associated_SNPs_40864 0 0 1 0 2 DOLPP1 chr9:131846947 3'AG 131846947 Downstream 60bp
chr9 131847006 131847006 1 + G A UCEC 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTCAGCCCTGTATTTGTCATCGTCAGTTTCGTGACCCT < 41bp 1 0.471203206012283 1 0.371700823307037 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131847006 nonsynonymous SNV 0.539 1 28 hm5C_associated_SNPs_40864 0 0 1 0 2 DOLPP1 chr9:131847047 5'GT 131847047 Upstream 42bp
chr14 96997923 96997923 1 + G A UCEC 96997917 + 96997897 96997937 41 ATATAAGATGTATAAGAAGTCTTAACGGTATGAGAAAGCCT ATATAAGATGTATAAGAAGTCTTAACAGTATGAGAAAGCCT < 41bp 1 0.245519799920278 1 0.0962882041931152 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:96997917 chr14:96997923 nonsynonymous SNV 0.993 4 27 hm5C_associated_SNPs_40866 0 0 1 0 1 PAPOLA chr14:96997923 5'GT 96997923 Upstream 1bp
chr17 78022552 78022552 1 + C T UCEC 78022532 + 78022512 78022552 41 GGAAGCAGAAGACGAAGGGTCCCAGCTGGTGGTTTTGGACC GGAAGCAGAAGACGAAGGGTCCCAGCTGGTGGTTTTGGACT < 41bp 1 0.207937218512647 1 0.239990025758743 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78022532 chr17:78022552 nonsynonymous SNV 0.991 3 41 hm5C_associated_SNPs_40874 0 0 1 0 1 CCDC40 chr17:78022560 5'GT 78022560 Upstream 9bp
chr12 104336951 104336951 1 + G A UCEC 104336943 + 104336923 104336963 41 GGATGAATACTGTATTCAGGCCCTTCCCGAATTTGATGGGA GGATGAATACTGTATTCAGGCCCTTCCCAAATTTGATGGGA < 41bp 1 0.0737234134917424 1 0.0560506880283356 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104336943 chr12:104336951 nonsynonymous SNV 0.980 2 29 hm5C_associated_SNPs_40875 0 0 1 0 1 HSP90B1 chr12:104336852 3'AG 104336852 Downstream 100bp
chr12 104336951 104336951 1 + G A UCEC 104336944 + 104336924 104336964 41 GATGAATACTGTATTCAGGCCCTTCCCGAATTTGATGGGAA GATGAATACTGTATTCAGGCCCTTCCCAAATTTGATGGGAA < 41bp 1 0.00481567625971354 1 0.0942005217075348 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104336944 chr12:104336951 nonsynonymous SNV 0.980 2 28 hm5C_associated_SNPs_40876 0 0 1 0 1 HSP90B1 chr12:104336852 3'AG 104336852 Downstream 100bp
chr1 228333237 228333237 1 + G T UCEC 228333243 + 228333223 228333263 41 CCCAGGCCTGTGGTGCTGAGCGGGCCTTCGGGAGCTGGGAA CCCAGGCCTGTGGTTCTGAGCGGGCCTTCGGGAGCTGGGAA < 41bp 1 0.730558839949276 1 0.856442809104919 experiment 0.538882320101448 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333243 chr1:228333237 nonsynonymous SNV 0.775 1 15 hm5C_associated_SNPs_40877 0 0 1 0 2 GUK1 chr1:228333212 3'AG 228333212 Downstream 26bp
chr1 228333237 228333237 1 + G T UCEC 228333243 + 228333223 228333263 41 CCCAGGCCTGTGGTGCTGAGCGGGCCTTCGGGAGCTGGGAA CCCAGGCCTGTGGTTCTGAGCGGGCCTTCGGGAGCTGGGAA < 41bp 1 0.730558839949276 1 0.856442809104919 experiment 0.538882320101448 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333243 chr1:228333237 nonsynonymous SNV 0.775 1 15 hm5C_associated_SNPs_40877 0 0 1 0 2 GUK1 chr1:228333325 5'GT 228333325 Upstream 89bp
chr1 228333237 228333237 1 + G T UCEC 228333247 + 228333227 228333267 41 GGCCTGTGGTGCTGAGCGGGCCTTCGGGAGCTGGGAAGAGC GGCCTGTGGTTCTGAGCGGGCCTTCGGGAGCTGGGAAGAGC < 41bp 1 0.0416806172699008 1 0.105187177658081 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333247 chr1:228333237 nonsynonymous SNV 0.775 1 11 hm5C_associated_SNPs_40878 0 0 1 0 2 GUK1 chr1:228333212 3'AG 228333212 Downstream 26bp
chr1 228333237 228333237 1 + G T UCEC 228333247 + 228333227 228333267 41 GGCCTGTGGTGCTGAGCGGGCCTTCGGGAGCTGGGAAGAGC GGCCTGTGGTTCTGAGCGGGCCTTCGGGAGCTGGGAAGAGC < 41bp 1 0.0416806172699008 1 0.105187177658081 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333247 chr1:228333237 nonsynonymous SNV 0.775 1 11 hm5C_associated_SNPs_40878 0 0 1 0 2 GUK1 chr1:228333325 5'GT 228333325 Upstream 89bp
chr3 124351531 124351531 1 + A G UCEC 124351528 + 124351508 124351548 41 GCCTGGGGATGAAACAACCCCTCAGGGAGACAGCGCTGATG GCCTGGGGATGAAACAACCCCTCGGGGAGACAGCGCTGATG < 41bp 1 0.543579802470119 1 0.625898838043213 experiment 0.912840395059762 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KALRN ENSG00000160145 CDS Human protein_coding chr3:124351528 chr3:124351531 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_40879 0 0 1 0 1 KALRN chr3:124351550 5'GT 124351550 Upstream 20bp
chr11 43465656 43465656 1 + A G UCEC 43465648 + 43465628 43465668 41 TAAAGAAACCCAAAGGAGATCATAAGAAAACTCCTGGGAAA TAAAGAAACCCAAAGGAGATCATAAGAAGACTCCTGGGAAA < 41bp 1 0.412525968430631 1 0.347854942083359 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTC17 ENSG00000052841 CDS Human protein_coding chr11:43465648 chr11:43465656 synonymous SNV . 0 29 hm5C_associated_SNPs_40881 0 0 1 0 1 TTC17 chr11:43465606 3'AG 43465606 Downstream 51bp
chr7 98564668 98564668 1 + C T UCEC 98564687 + 98564667 98564707 41 CCTACACTCCGGGAGAAGTCCATTTTGCTTGTGAAGATGAT CTTACACTCCGGGAGAAGTCCATTTTGCTTGTGAAGATGAT < 41bp 1 0.0105607238212938 1 0.105094760656357 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98564687 chr7:98564668 nonsynonymous SNV 0.992 3 2 hm5C_associated_SNPs_40882 0 0 1 0 1 TRRAP chr7:98564664 3'AG 98564664 Downstream 5bp
chr1 155582043 155582043 1 + A G UCEC 155582039 + 155582019 155582059 41 GCGCGAAGGCGGCAGAGCTGCTACAAGATGAATATTCAGGG GCGCGAAGGCGGCAGAGCTGCTACGAGATGAATATTCAGGG < 41bp 1 0.669255442831168 1 0.18413257598877 experiment 0.661489114337664 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582039 chr1:155582043 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_40883 0 0 0 0 2 MSTO1 chr1:155581973 3'AG 155581973 Downstream 71bp
chr1 155582043 155582043 1 + A G UCEC 155582039 + 155582019 155582059 41 GCGCGAAGGCGGCAGAGCTGCTACAAGATGAATATTCAGGG GCGCGAAGGCGGCAGAGCTGCTACGAGATGAATATTCAGGG < 41bp 1 0.669255442831168 1 0.18413257598877 experiment 0.661489114337664 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582039 chr1:155582043 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_40883 0 0 0 0 2 MSTO1 chr1:155582107 5'GT 155582107 Upstream 65bp
chr1 44134866 44134866 1 + T C UCEC 44134847 + 44134827 44134867 41 AGGAGGTGAGTCAGAGTGAGCTCTTCCCCAAGGAGGATCTG AGGAGGTGAGTCAGAGTGAGCTCTTCCCCAAGGAGGATCCG < 41bp 1 0.233157541517163 1 0.0301547050476074 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KDM4A ENSG00000066135 CDS Human protein_coding chr1:44134847 chr1:44134866 nonsynonymous SNV 0.997 2 40 hm5C_associated_SNPs_40884 0 0 1 0 1 KDM4A chr1:44134771 3'AG 44134771 Downstream 96bp
chr21 47864708 47864708 1 + A G UCEC 47864706 + 47864686 47864726 41 ATTCACCATTTAGAAGTGATCCAGCAAAGATTGGGAGGGGT ATTCACCATTTAGAAGTGATCCGGCAAAGATTGGGAGGGGT < 41bp 1 0.0792635236223007 1 0.486805528402328 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47864706 chr21:47864708 nonsynonymous SNV 0.863 3 23 hm5C_associated_SNPs_40886 0 0 1 0 1 PCNT chr21:47864734 5'GT 47864734 Upstream 27bp
chr18 2751374 2751374 1 + A G UCEC 2751377 + 2751357 2751397 41 AGCTGTCTACCAGTGGGAACCGACCCCCAGCAAATGTGAGT AGCTGTCTACCAGTGGGGACCGACCCCCAGCAAATGTGAGT < 41bp 1 0.109474287888026 1 0.286013722419739 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMCHD1 ENSG00000101596 CDS Human protein_coding chr18:2751377 chr18:2751374 nonsynonymous SNV 0.752 0 18 hm5C_associated_SNPs_40887 0 0 1 0 2 SMCHD1 chr18:2751276 3'AG 2751276 Downstream 99bp
chr18 2751374 2751374 1 + A G UCEC 2751377 + 2751357 2751397 41 AGCTGTCTACCAGTGGGAACCGACCCCCAGCAAATGTGAGT AGCTGTCTACCAGTGGGGACCGACCCCCAGCAAATGTGAGT < 41bp 1 0.109474287888026 1 0.286013722419739 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMCHD1 ENSG00000101596 CDS Human protein_coding chr18:2751377 chr18:2751374 nonsynonymous SNV 0.752 0 18 hm5C_associated_SNPs_40887 0 0 1 0 2 SMCHD1 chr18:2751391 5'GT 2751391 Upstream 18bp
chr6 43171609 43171609 1 + G A UCEC 43171598 + 43171578 43171618 41 CTGTTTGTTCCCAGACTGAACAGGGTTTTGCGCCACGAGCA CTGTTTGTTCCCAGACTGAACAGGGTTTTGCACCACGAGCA < 41bp 1 0.664495635546627 1 0.705987691879272 experiment 0.671008728906747 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43171598 chr6:43171609 nonsynonymous SNV 0.979 3 32 hm5C_associated_SNPs_40888 0 0 0 0 1 CUL9 chr6:43171592 3'AG 43171592 Downstream 18bp
chr9 131345012 131345012 1 + C T UCEC 131345031 + 131345011 131345051 41 GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATCTGCAGC GTGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATCTGCAGC < 41bp 1 0.123077994203053 1 0.0947505533695221 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131345031 chr9:131345012 nonsynonymous SNV 0.952 1 2 hm5C_associated_SNPs_40889 0 0 1 0 1 SPTAN1 chr9:131344973 3'AG 131344973 Downstream 40bp
chr9 18721617 18721617 1 + C T UCEC 18721629 + 18721609 18721649 41 GCCGCCGGCCCCCACAGCTCCTGAAGTCCTGCAATTTGGAT GCCGCCGGTCCCCACAGCTCCTGAAGTCCTGCAATTTGGAT < 41bp 1 0.412017057892828 1 0.336946308612823 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18721629 chr9:18721617 nonsynonymous SNV 0.998 3 9 hm5C_associated_SNPs_40890 0 0 0 0 2 ADAMTSL1 chr9:18721534 3'AG 18721534 Downstream 84bp
chr9 18721617 18721617 1 + C T UCEC 18721629 + 18721609 18721649 41 GCCGCCGGCCCCCACAGCTCCTGAAGTCCTGCAATTTGGAT GCCGCCGGTCCCCACAGCTCCTGAAGTCCTGCAATTTGGAT < 41bp 1 0.412017057892828 1 0.336946308612823 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18721629 chr9:18721617 nonsynonymous SNV 0.998 3 9 hm5C_associated_SNPs_40890 0 0 0 0 2 ADAMTSL1 chr9:18721663 5'GT 18721663 Upstream 47bp
chr7 4824583 4824583 1 + G A UCEC 4824600 + 4824580 4824620 41 TCCGCCACCTCCTCTGCCGGCCGCCTGCTGCCGCCCCGGGA TCCACCACCTCCTCTGCCGGCCGCCTGCTGCCGCCCCGGGA < 41bp 1 0.119906848687955 1 0.33564293384552 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824600 chr7:4824583 nonsynonymous SNV 0.036 0 4 hm5C_associated_SNPs_40891 0 0 1 0 2 AP5Z1 chr7:4824539 3'AG 4824539 Downstream 45bp
chr7 4824583 4824583 1 + G A UCEC 4824600 + 4824580 4824620 41 TCCGCCACCTCCTCTGCCGGCCGCCTGCTGCCGCCCCGGGA TCCACCACCTCCTCTGCCGGCCGCCTGCTGCCGCCCCGGGA < 41bp 1 0.119906848687955 1 0.33564293384552 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824600 chr7:4824583 nonsynonymous SNV 0.036 0 4 hm5C_associated_SNPs_40891 0 0 1 0 2 AP5Z1 chr7:4824679 5'GT 4824679 Upstream 97bp
chr1 109441601 109441601 1 + C T UCEC 109441598 + 109441578 109441618 41 ATTTCTTGGTGAATTTGAAACTGCCTCGGAATACTACAAGT ATTTCTTGGTGAATTTGAAACTGTCTCGGAATACTACAAGT < 41bp 1 0.153424193089249 1 0.121497541666031 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GPSM2 ENSG00000121957 CDS Human protein_coding chr1:109441598 chr1:109441601 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_40892 0 0 1 0 1 GPSM2 chr1:109441616 5'GT 109441616 Upstream 16bp
chr6 29911263 29911263 1 + T C UCEC 29911265 + 29911245 29911285 41 GCCTACCTGGATGGCACGTGCGTGGAGTGGCTCCGCAGATA GCCTACCTGGATGGCACGCGCGTGGAGTGGCTCCGCAGATA < 41bp 1 0.606916280868173 1 0.511029720306396 experiment 0.786167438263655 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911265 chr6:29911263 nonsynonymous SNV 0.002 3 19 hm5C_associated_SNPs_40894 0 0 0 0 1 HLA-A chr6:29911320 5'GT 29911320 Upstream 58bp
chr6 29911263 29911263 1 + T C UCEC 29911277 + 29911257 29911297 41 GGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGG GGCACGCGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGG < 41bp 1 0.58441391013729 1 0.215847432613373 experiment 0.831172179725421 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911277 chr6:29911263 nonsynonymous SNV 0.002 3 7 hm5C_associated_SNPs_40895 0 0 0 0 1 HLA-A chr6:29911320 5'GT 29911320 Upstream 58bp
chr6 29911263 29911263 1 + T C UCEC 29911278 + 29911258 29911298 41 GCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGG GCACGCGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGG < 41bp 1 0.443115399613905 1 0.345074534416199 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911278 chr6:29911263 nonsynonymous SNV 0.002 3 6 hm5C_associated_SNPs_40896 0 0 0 0 1 HLA-A chr6:29911320 5'GT 29911320 Upstream 58bp
chr1 156142788 156142788 1 + C A UCEC 156142796 + 156142776 156142816 41 CTTGTCATGTACCTGGGAACCAGTGAGTAAAGAGTTCCGGG CTTGTCATGTACATGGGAACCAGTGAGTAAAGAGTTCCGGG < 41bp 1 0.5032051120768 1 0.548011898994446 experiment 0.9935897758464 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156142796 chr1:156142788 nonsynonymous SNV 0.995 4 13 hm5C_associated_SNPs_40897 0 0 0 0 1 SEMA4A chr1:156142797 5'GT 156142797 Upstream 10bp
chr1 172356315 172356315 1 + T C UCEC 172356326 + 172356306 172356346 41 CAGTTGTATTCTTCAGAGGACCAAAATACCCTGATGGAGGA CAGTTGTATCCTTCAGAGGACCAAAATACCCTGATGGAGGA < 41bp 1 0.146137371551406 1 0.216324746608734 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DNM3 ENSG00000197959 CDS Human protein_coding chr1:172356326 chr1:172356315 nonsynonymous SNV 0.848 3 10 hm5C_associated_SNPs_40898 0 0 0 0 1 DNM3 chr1:172356273 3'AG 172356273 Downstream 43bp
chr12 98925507 98925507 1 + A G UCEC 98925505 + 98925485 98925525 41 AGCTTTTGAAACTGAGGGAACAAGGAACAGAATCAAGATCT AGCTTTTGAAACTGAGGGAACAGGGAACAGAATCAAGATCT < 41bp 1 0.733540519561283 1 0.700898885726929 experiment 0.532918960877434 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMPO ENSG00000120802 CDS Human protein_coding chr12:98925505 chr12:98925507 synonymous SNV . 0 23 hm5C_associated_SNPs_40900 0 0 1 0 1 TMPO chr12:98925458 3'AG 98925458 Downstream 50bp
chr2 173451088 173451088 1 + G A UCEC 173451098 + 173451078 173451118 41 CCAAGACCTCGTGTTGAGACCTCCCGCGCAGTGCCTCTGGT CCAAGACCTCATGTTGAGACCTCCCGCGCAGTGCCTCTGGT < 41bp 1 0.336605043109947 1 0.578772306442261 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK1 ENSG00000152256 CDS Human protein_coding chr2:173451098 chr2:173451088 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_40901 0 0 1 0 2 PDK1 chr2:173451006 3'AG 173451006 Downstream 83bp
chr2 173451088 173451088 1 + G A UCEC 173451098 + 173451078 173451118 41 CCAAGACCTCGTGTTGAGACCTCCCGCGCAGTGCCTCTGGT CCAAGACCTCATGTTGAGACCTCCCGCGCAGTGCCTCTGGT < 41bp 1 0.336605043109947 1 0.578772306442261 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK1 ENSG00000152256 CDS Human protein_coding chr2:173451098 chr2:173451088 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_40901 0 0 1 0 2 PDK1 chr2:173451116 5'GT 173451116 Upstream 29bp
chr19 16212141 16212141 1 + A G UCEC 16212142 + 16212122 16212162 41 TGGATCAGACACTAAACGAACTTAACTGTATATAAGCAAAA TGGATCAGACACTAAACGAGCTTAACTGTATATAAGCAAAA < 41bp 1 0.133095686217058 1 0.0434053540229797 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPM4 ENSG00000167460 CDS Human protein_coding chr19:16212142 chr19:16212141 synonymous SNV . 0 20 hm5C_associated_SNPs_40902 0 0 1 0 1 TPM4 chr19:16212074 3'AG 16212074 Downstream 68bp
chr3 124456805 124456805 1 + C A UCEC 124456785 + 124456765 124456805 41 GCACCCAAAGAACTCAGCTTCGGTGCACGTGCAGAGCTGCC GCACCCAAAGAACTCAGCTTCGGTGCACGTGCAGAGCTGCA < 41bp 1 0.372816513952122 1 0.712706387042999 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UMPS ENSG00000114491 CDS Human protein_coding chr3:124456785 chr3:124456805 nonsynonymous SNV 0.977 4 41 hm5C_associated_SNPs_40903 0 0 1 0 1 UMPS chr3:124456762 3'AG 124456762 Downstream 44bp
chr16 57485042 57485042 1 + C T UCEC 57485048 + 57485028 57485068 41 GAAGCAGCAGCCTCCCAACTCATTTTCTCAGCAGCATTCTG GAAGCAGCAGCCTCTCAACTCATTTTCTCAGCAGCATTCTG < 41bp 1 0.122779297972581 1 0.039093941450119 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57485048 chr16:57485042 nonsynonymous SNV 0.022 1 15 hm5C_associated_SNPs_40907 0 0 1 0 2 COQ9 chr16:57484952 3'AG 57484952 Downstream 91bp
chr16 57485042 57485042 1 + C T UCEC 57485048 + 57485028 57485068 41 GAAGCAGCAGCCTCCCAACTCATTTTCTCAGCAGCATTCTG GAAGCAGCAGCCTCTCAACTCATTTTCTCAGCAGCATTCTG < 41bp 1 0.122779297972581 1 0.039093941450119 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57485048 chr16:57485042 nonsynonymous SNV 0.022 1 15 hm5C_associated_SNPs_40907 0 0 1 0 2 COQ9 chr16:57485120 5'GT 57485120 Upstream 79bp
chr1 57157081 57157081 1 + G A UCEC 57157082 + 57157062 57157102 41 AAAAGATACCAGGTGATCAGCACTCCAACAGATTTTTTTAT AAAAGATACCAGGTGATCAACACTCCAACAGATTTTTTTAT < 41bp 1 0.0522560201026635 1 0.164559036493301 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57157082 chr1:57157081 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_40909 0 0 1 0 2 PRKAA2 chr1:57157067 3'AG 57157067 Downstream 15bp
chr1 57157081 57157081 1 + G A UCEC 57157082 + 57157062 57157102 41 AAAAGATACCAGGTGATCAGCACTCCAACAGATTTTTTTAT AAAAGATACCAGGTGATCAACACTCCAACAGATTTTTTTAT < 41bp 1 0.0522560201026635 1 0.164559036493301 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57157082 chr1:57157081 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_40909 0 0 1 0 2 PRKAA2 chr1:57157160 5'GT 57157160 Upstream 80bp
chr16 19184805 19184805 1 + C A UCEC 19184812 + 19184792 19184832 41 GGACCTGCCGGCACTGCTGTCAGAAGTGCTACGAGTCCAGC GGACCTGCCGGCAATGCTGTCAGAAGTGCTACGAGTCCAGC < 41bp 1 0.780331886267905 1 0.877788841724396 experiment 0.43933622746419 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYT17 ENSG00000103528 CDS Human protein_coding chr16:19184812 chr16:19184805 nonsynonymous SNV 0.999 1 14 hm5C_associated_SNPs_40913 0 0 0 0 2 SYT17 chr16:19184752 3'AG 19184752 Downstream 54bp
chr16 19184805 19184805 1 + C A UCEC 19184812 + 19184792 19184832 41 GGACCTGCCGGCACTGCTGTCAGAAGTGCTACGAGTCCAGC GGACCTGCCGGCAATGCTGTCAGAAGTGCTACGAGTCCAGC < 41bp 1 0.780331886267905 1 0.877788841724396 experiment 0.43933622746419 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYT17 ENSG00000103528 CDS Human protein_coding chr16:19184812 chr16:19184805 nonsynonymous SNV 0.999 1 14 hm5C_associated_SNPs_40913 0 0 0 0 2 SYT17 chr16:19184900 5'GT 19184900 Upstream 96bp
chr1 17265615 17265615 1 + A G UCEC 17265609 + 17265589 17265629 41 GCTCGCCCTGATCCACTCCGCCCTGCACAAGCGCCAGCTGC GCTCGCCCTGATCCACTCCGCCCTGCGCAAGCGCCAGCTGC < 41bp 1 0.0942279297837288 1 0.12973016500473 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CROCC ENSG00000058453 CDS Human protein_coding chr1:17265609 chr1:17265615 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_40915 0 0 0 0 1 CROCC chr1:17265637 5'GT 17265637 Upstream 23bp
chr5 153709232 153709232 1 + G A UCEC 153709248 + 153709228 153709268 41 CAGTGTGCTCAATCGCTCGCCTCCAGAGCTGGTCGCCGAGA CAGTATGCTCAATCGCTCGCCTCCAGAGCTGGTCGCCGAGA < 41bp 1 0.631806677003144 1 0.932332277297974 experiment 0.736386645993711 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153709248 chr5:153709232 nonsynonymous SNV 0.989 3 5 hm5C_associated_SNPs_40916 0 0 0 0 1 GALNT10 chr5:153709298 5'GT 153709298 Upstream 67bp
chr11 68115618 68115618 1 + T C UCEC 68115603 + 68115583 68115623 41 GAAGCTGTACTGGACGGACTCAGAGACCAACCGCATCGAGG GAAGCTGTACTGGACGGACTCAGAGACCAACCGCACCGAGG < 41bp 1 0.693462975875694 1 0.900831580162048 experiment 0.613074048248611 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68115603 chr11:68115618 nonsynonymous SNV 0.976 4 36 hm5C_associated_SNPs_40917 0 0 0 0 1 LRP5 chr11:68115711 5'GT 68115711 Upstream 94bp
chr21 47983782 47983782 1 + C T UCEC 47983797 + 47983777 47983817 41 CCCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG CCCGGTGTGAAGGTCATCATCGCACACACCGAGACCAAAGG < 41bp 1 0.337541345495261 1 0.36799681186676 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47983797 chr21:47983782 synonymous SNV . 0 6 hm5C_associated_SNPs_40918 0 0 1 0 2 DIP2A chr21:47983771 3'AG 47983771 Downstream 12bp
chr21 47983782 47983782 1 + C T UCEC 47983797 + 47983777 47983817 41 CCCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG CCCGGTGTGAAGGTCATCATCGCACACACCGAGACCAAAGG < 41bp 1 0.337541345495261 1 0.36799681186676 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47983797 chr21:47983782 synonymous SNV . 0 6 hm5C_associated_SNPs_40918 0 0 1 0 2 DIP2A chr21:47983845 5'GT 47983845 Upstream 64bp
chr19 36579985 36579985 1 + T C UCEC 36579965 + 36579945 36579985 41 AGAGACATCCAGATGATCAGCTGTGGGGCTGACAAGAGCAT AGAGACATCCAGATGATCAGCTGTGGGGCTGACAAGAGCAC < 41bp 1 0.287012993918609 1 0.176028609275818 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36579965 chr19:36579985 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_40919 0 0 1 0 2 WDR62 chr19:36579940 3'AG 36579940 Downstream 46bp
chr19 36579985 36579985 1 + T C UCEC 36579965 + 36579945 36579985 41 AGAGACATCCAGATGATCAGCTGTGGGGCTGACAAGAGCAT AGAGACATCCAGATGATCAGCTGTGGGGCTGACAAGAGCAC < 41bp 1 0.287012993918609 1 0.176028609275818 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36579965 chr19:36579985 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_40919 0 0 1 0 2 WDR62 chr19:36580007 5'GT 36580007 Upstream 23bp
chr7 106826886 106826886 1 + G A UCEC 106826904 + 106826884 106826924 41 TGGCCTTCAACTGTCTGGCACTGTTTTTTGAAAGGTAAAAC TGACCTTCAACTGTCTGGCACTGTTTTTTGAAAGGTAAAAC < 41bp 1 0.0991838023245306 1 0.0271297991275787 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HBP1 ENSG00000105856 CDS Human protein_coding chr7:106826904 chr7:106826886 stopgain 0.999 1 3 hm5C_associated_SNPs_40920 0 0 1 0 2 HBP1 chr7:106826806 3'AG 106826806 Downstream 81bp
chr7 106826886 106826886 1 + G A UCEC 106826904 + 106826884 106826924 41 TGGCCTTCAACTGTCTGGCACTGTTTTTTGAAAGGTAAAAC TGACCTTCAACTGTCTGGCACTGTTTTTTGAAAGGTAAAAC < 41bp 1 0.0991838023245306 1 0.0271297991275787 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HBP1 ENSG00000105856 CDS Human protein_coding chr7:106826904 chr7:106826886 stopgain 0.999 1 3 hm5C_associated_SNPs_40920 0 0 1 0 2 HBP1 chr7:106826917 5'GT 106826917 Upstream 32bp
chr11 71941191 71941191 1 + C T UCEC 71941211 + 71941191 71941231 41 CCTGACCAAGATTGGGAAGTCACAGAAGTTCACGCTGAGCG TCTGACCAAGATTGGGAAGTCACAGAAGTTCACGCTGAGCG < 41bp 1 0.465026798012366 1 0.43515083193779 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71941211 chr11:71941191 synonymous SNV . 0 1 hm5C_associated_SNPs_40921 0 0 1 0 1 INPPL1 chr11:71941165 3'AG 71941165 Downstream 27bp
chr15 69728968 69728968 1 + A T UCEC 69728948 + 69728928 69728968 41 GCAGAGTTTTCCACCTTTGCCATCATGCGAAATTTTGGATA GCAGAGTTTTCCACCTTTGCCATCATGCGAAATTTTGGATT < 41bp 1 0.5660954831079 1 0.08512082695961 experiment 0.867809033784199 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69728948 chr15:69728968 nonsynonymous SNV 0.991 0 41 hm5C_associated_SNPs_40923 0 0 1 0 2 KIF23 chr15:69728903 3'AG 69728903 Downstream 66bp
chr15 69728968 69728968 1 + A T UCEC 69728948 + 69728928 69728968 41 GCAGAGTTTTCCACCTTTGCCATCATGCGAAATTTTGGATA GCAGAGTTTTCCACCTTTGCCATCATGCGAAATTTTGGATT < 41bp 1 0.5660954831079 1 0.08512082695961 experiment 0.867809033784199 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69728948 chr15:69728968 nonsynonymous SNV 0.991 0 41 hm5C_associated_SNPs_40923 0 0 1 0 2 KIF23 chr15:69729061 5'GT 69729061 Upstream 94bp
chr11 598393 598393 1 + G C UCEC 598413 + 598393 598433 41 GTCTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGCGACTG CTCTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGCGACTG < 41bp 1 0.11384407948472 1 0.312545567750931 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:598413 chr11:598393 synonymous SNV . 0 1 hm5C_associated_SNPs_40924 0 0 1 0 1 PHRF1 chr11:598373 3'AG 598373 Downstream 21bp
chr17 78335565 78335565 1 + G A UCEC 78335559 + 78335539 78335579 41 CCCAAGAAGTTCGTGGACATCTTTCAGCAGACTCCTCTGGG CCCAAGAAGTTCGTGGACATCTTTCAACAGACTCCTCTGGG < 41bp 1 0.0312183614513241 1 0.0685569643974304 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78335559 chr17:78335565 synonymous SNV . 0 27 hm5C_associated_SNPs_40925 0 0 1 0 1 RNF213 chr17:78335534 3'AG 78335534 Downstream 32bp
chr3 50311359 50311359 1 + C T UCEC 50311344 + 50311324 50311364 41 GCCCTGGTCTTCGCCTCCAGCAGCATCTTCCAGGGCTCTGC GCCCTGGTCTTCGCCTCCAGCAGCATCTTCCAGGGTTCTGC < 41bp 1 0.592196590736683 1 0.43670067191124 experiment 0.815606818526635 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SEMA3B ENSG00000012171 ncRNA_exonic Human protein_coding chr3:50311344 chr3:50311359 . . 0 36 hm5C_associated_SNPs_40927 0 0 1 0 2 SEMA3B chr3:50311344 3'AG 50311344 Downstream 16bp
chr3 50311359 50311359 1 + C T UCEC 50311344 + 50311324 50311364 41 GCCCTGGTCTTCGCCTCCAGCAGCATCTTCCAGGGCTCTGC GCCCTGGTCTTCGCCTCCAGCAGCATCTTCCAGGGTTCTGC < 41bp 1 0.592196590736683 1 0.43670067191124 experiment 0.815606818526635 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SEMA3B ENSG00000012171 ncRNA_exonic Human protein_coding chr3:50311344 chr3:50311359 . . 0 36 hm5C_associated_SNPs_40927 0 0 1 0 2 SEMA3B chr3:50311347 3'AG 50311347 Downstream 13bp
chr10 3176690 3176690 1 + C G UCEC 3176685 + 3176665 3176705 41 CCACCAACAGGGTGGGGCACCCTCTCCATTTGATAGAAACT CCACCAACAGGGTGGGGCACCCTCTGCATTTGATAGAAACT < 41bp 1 0.0159512478006787 1 0.0795022547245026 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PFKP ENSG00000067057 CDS Human protein_coding chr10:3176685 chr10:3176690 nonsynonymous SNV 0.254 3 26 hm5C_associated_SNPs_40929 0 0 1 0 1 PFKP chr10:3176774 5'GT 3176774 Upstream 85bp
chr10 3176690 3176690 1 + C G UCEC 3176688 + 3176668 3176708 41 CCAACAGGGTGGGGCACCCTCTCCATTTGATAGAAACTTTG CCAACAGGGTGGGGCACCCTCTGCATTTGATAGAAACTTTG < 41bp 1 0.744040310943463 1 0.801944136619568 experiment 0.511919378113075 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PFKP ENSG00000067057 CDS Human protein_coding chr10:3176688 chr10:3176690 nonsynonymous SNV 0.254 3 23 hm5C_associated_SNPs_40930 0 0 1 0 1 PFKP chr10:3176774 5'GT 3176774 Upstream 85bp
chr17 47115720 47115720 1 + C A UCEC 47115716 + 47115696 47115736 41 AAGCAGCAGCAAGTGGACATCCCCCTTCGGCTCCTGGTGCC AAGCAGCAGCAAGTGGACATCCCCATTCGGCTCCTGGTGCC < 41bp 1 0.673855791094853 1 0.406268835067749 experiment 0.652288417810295 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47115716 chr17:47115720 nonsynonymous SNV 0.942 2 25 hm5C_associated_SNPs_40931 0 0 1 0 1 IGF2BP1 chr17:47115811 5'GT 47115811 Upstream 92bp
chr17 47115720 47115720 1 + C A UCEC 47115718 + 47115698 47115738 41 GCAGCAGCAAGTGGACATCCCCCTTCGGCTCCTGGTGCCCA GCAGCAGCAAGTGGACATCCCCATTCGGCTCCTGGTGCCCA < 41bp 1 0.053551689908408 1 0.0480248630046844 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47115718 chr17:47115720 nonsynonymous SNV 0.942 2 23 hm5C_associated_SNPs_40932 0 0 1 0 1 IGF2BP1 chr17:47115811 5'GT 47115811 Upstream 92bp
chr12 132546836 132546836 1 + C T UCEC 132546853 + 132546833 132546873 41 CCCCGGCACGGTCTTTGGTGCCCCAAGTGTCCCAAGGTAAA CCCTGGCACGGTCTTTGGTGCCCCAAGTGTCCCAAGGTAAA < 41bp 1 0.124308090276092 1 0.138336807489395 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546853 chr12:132546836 nonsynonymous SNV 0.171 5 4 hm5C_associated_SNPs_40933 0 0 1 0 1 EP400 chr12:132546868 5'GT 132546868 Upstream 33bp
chr1 76255030 76255030 1 + A G UCEC 76255012 + 76254992 76255032 41 CTAGTATCGGACATGATCCTCATCTTTTATACACTCTTAGT CTAGTATCGGACATGATCCTCATCTTTTATACACTCTTGGT < 41bp 1 0.259685373036812 1 0.0464441478252411 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76255012 chr1:76255030 nonsynonymous SNV 0.991 4 39 hm5C_associated_SNPs_40935 0 0 1 0 1 RABGGTB chr1:76255041 5'GT 76255041 Upstream 12bp
chr17 4799510 4799510 1 + G A UCEC 4799505 + 4799485 4799525 41 CAGTCCTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCGA CAGTCCTTTGCCGACCTCCCCCACCACCCTCTGCTGGTCGA < 41bp 1 0.0767008920226729 1 0.142163008451462 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799505 chr17:4799510 nonsynonymous SNV 0.999 4 26 hm5C_associated_SNPs_40936 0 0 1 0 1 MINK1 chr17:4799488 3'AG 4799488 Downstream 23bp
chr17 4799510 4799510 1 + G A UCEC 4799508 + 4799488 4799528 41 TCCTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCGACCT TCCTTTGCCGACCTCCCCCACCACCCTCTGCTGGTCGACCT < 41bp 1 0.0931018111385845 1 0.218882948160172 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799508 chr17:4799510 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_40937 0 0 1 0 1 MINK1 chr17:4799488 3'AG 4799488 Downstream 23bp
chr20 39986973 39986973 1 + C A UCEC 39986960 + 39986940 39986980 41 GTTTCTGCCCCACGGACAGCCCTTCTATGCTGCCTTTGGGA GTTTCTGCCCCACGGACAGCCCTTCTATGCTGCATTTGGGA < 41bp 1 0.0107287804019931 1 0.111655384302139 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39986960 chr20:39986973 synonymous SNV . 0 34 hm5C_associated_SNPs_40940 0 0 1 2 2 LPIN3 chr20:39986877 3'AG 39986877 Downstream 97bp
chr20 39986973 39986973 1 + C A UCEC 39986960 + 39986940 39986980 41 GTTTCTGCCCCACGGACAGCCCTTCTATGCTGCCTTTGGGA GTTTCTGCCCCACGGACAGCCCTTCTATGCTGCATTTGGGA < 41bp 1 0.0107287804019931 1 0.111655384302139 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39986960 chr20:39986973 synonymous SNV . 0 34 hm5C_associated_SNPs_40940 0 0 1 2 2 LPIN3 chr20:39986991 5'GT 39986991 Upstream 19bp
chr2 27663370 27663370 1 + G C UCEC 27663350 + 27663330 27663370 41 TGGCTGAAATCCCTGCAGGACCAGGAAGAGAACCAGTTCAG TGGCTGAAATCCCTGCAGGACCAGGAAGAGAACCAGTTCAC < 41bp 1 0.32506387047183 1 0.530017018318176 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663350 chr2:27663370 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_40941 0 0 1 0 1 NRBP1 chr2:27663375 5'GT 27663375 Upstream 6bp
chr17 64685104 64685104 1 + A G UCEC 64685113 + 64685093 64685133 41 AGGTGAGTACTACAACGTACCCATTCCGGAAGGGGACGAGG AGGTGAGTACTGCAACGTACCCATTCCGGAAGGGGACGAGG < 41bp 1 0.0273591832049799 1 0.0530323684215546 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64685113 chr17:64685104 nonsynonymous SNV 0.993 4 12 hm5C_associated_SNPs_40942 0 0 1 0 2 PRKCA chr17:64685069 3'AG 64685069 Downstream 36bp
chr17 64685104 64685104 1 + A G UCEC 64685113 + 64685093 64685133 41 AGGTGAGTACTACAACGTACCCATTCCGGAAGGGGACGAGG AGGTGAGTACTGCAACGTACCCATTCCGGAAGGGGACGAGG < 41bp 1 0.0273591832049799 1 0.0530323684215546 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64685113 chr17:64685104 nonsynonymous SNV 0.993 4 12 hm5C_associated_SNPs_40942 0 0 1 0 2 PRKCA chr17:64685165 5'GT 64685165 Upstream 62bp
chr4 57876573 57876573 1 + G A UCEC 57876563 + 57876543 57876583 41 CTTTTGCGTCTACTCTTTCTCACCTGCGTCGTTTAAATTCT CTTTTGCGTCTACTCTTTCTCACCTGCGTCATTTAAATTCT < 41bp 1 0.641953362140799 1 0.421427458524704 experiment 0.716093275718401 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57876563 chr4:57876573 nonsynonymous SNV 0.999 5 31 hm5C_associated_SNPs_40943 0 0 1 0 2 POLR2B chr4:57876527 3'AG 57876527 Downstream 47bp
chr4 57876573 57876573 1 + G A UCEC 57876563 + 57876543 57876583 41 CTTTTGCGTCTACTCTTTCTCACCTGCGTCGTTTAAATTCT CTTTTGCGTCTACTCTTTCTCACCTGCGTCATTTAAATTCT < 41bp 1 0.641953362140799 1 0.421427458524704 experiment 0.716093275718401 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57876563 chr4:57876573 nonsynonymous SNV 0.999 5 31 hm5C_associated_SNPs_40943 0 0 1 0 2 POLR2B chr4:57876670 5'GT 57876670 Upstream 98bp
chr7 45662260 45662260 1 + C T UCEC 45662274 + 45662254 45662294 41 GTTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG GTTTCATGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG < 41bp 1 0.392534021827298 1 0.637467384338379 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45662274 chr7:45662260 nonsynonymous SNV 0.985 5 7 hm5C_associated_SNPs_40944 0 0 1 0 2 ADCY1 chr7:45662231 3'AG 45662231 Downstream 30bp
chr7 45662260 45662260 1 + C T UCEC 45662274 + 45662254 45662294 41 GTTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG GTTTCATGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG < 41bp 1 0.392534021827298 1 0.637467384338379 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45662274 chr7:45662260 nonsynonymous SNV 0.985 5 7 hm5C_associated_SNPs_40944 0 0 1 0 2 ADCY1 chr7:45662342 5'GT 45662342 Upstream 83bp
chr5 154244900 154244900 1 + C T UCEC 154244920 + 154244900 154244940 41 CTTCTGGAATCAATACTTGGCAGTTCAATTTCAAATTTAAC TTTCTGGAATCAATACTTGGCAGTTCAATTTCAAATTTAAC < 41bp 1 0.0518227332777401 1 0.0715358853340149 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CNOT8 ENSG00000155508 CDS Human protein_coding chr5:154244920 chr5:154244900 nonsynonymous SNV 0.999 4 1 hm5C_associated_SNPs_40945 0 0 1 0 1 CNOT8 chr5:154244945 5'GT 154244945 Upstream 46bp
chr17 38290576 38290576 1 + T C UCEC 38290560 + 38290540 38290580 41 AGCTACCCTGGTTGGATGAGCGTAGCCGATGCAGATTGGAG AGCTACCCTGGTTGGATGAGCGTAGCCGATGCAGATCGGAG < 41bp 1 0.203137775788226 1 0.180713981389999 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MSL1 ENSG00000188895 CDS Human protein_coding chr17:38290560 chr17:38290576 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_40946 0 0 1 0 1 MSL1 chr17:38290532 3'AG 38290532 Downstream 45bp
chr17 38290576 38290576 1 + T C UCEC 38290565 + 38290545 38290585 41 CCCTGGTTGGATGAGCGTAGCCGATGCAGATTGGAGATCCA CCCTGGTTGGATGAGCGTAGCCGATGCAGATCGGAGATCCA < 41bp 1 0.222555720496747 1 0.0895835757255554 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MSL1 ENSG00000188895 CDS Human protein_coding chr17:38290565 chr17:38290576 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_40947 0 0 1 0 1 MSL1 chr17:38290532 3'AG 38290532 Downstream 45bp
chr11 65978624 65978624 1 + G A UCEC 65978630 + 65978610 65978650 41 TCATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGC TCATTTCCTTAAGCAAGATGCCAACAAGCTGCAGATCATGC < 41bp 1 0.0112065017071527 1 0.0732742547988892 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978630 chr11:65978624 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_40948 0 0 1 0 1 PACS1 chr11:65978605 3'AG 65978605 Downstream 20bp
chr11 65978624 65978624 1 + G A UCEC 65978631 + 65978611 65978651 41 CATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGCT CATTTCCTTAAGCAAGATGCCAACAAGCTGCAGATCATGCT < 41bp 1 0.2529415588499 1 0.289121091365814 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978631 chr11:65978624 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_40949 0 0 1 0 1 PACS1 chr11:65978605 3'AG 65978605 Downstream 20bp
chr11 65978624 65978624 1 + G A UCEC 65978638 + 65978618 65978658 41 TTAAGCGAGATGCCAACAAGCTGCAGATCATGCTGCAAAGG TTAAGCAAGATGCCAACAAGCTGCAGATCATGCTGCAAAGG < 41bp 1 0.638659743118731 1 0.277484893798828 experiment 0.722680513762538 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978638 chr11:65978624 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_40950 0 0 1 0 1 PACS1 chr11:65978605 3'AG 65978605 Downstream 20bp
chr19 50919746 50919746 1 + C T UCEC 50919728 + 50919708 50919748 41 AGCAGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGCCC AGCAGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGTCC < 41bp 1 0.390754141501583 1 0.292333483695984 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLD1 ENSG00000062822;ENSG00000142539 CDS Human other chr19:50919728 chr19:50919746 nonsynonymous SNV 0.999 4 39 hm5C_associated_SNPs_40952 0 0 1 0 2 POLD1 chr19:50919653 3'AG 50919653 Downstream 94bp
chr19 50919746 50919746 1 + C T UCEC 50919728 + 50919708 50919748 41 AGCAGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGCCC AGCAGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGTCC < 41bp 1 0.390754141501583 1 0.292333483695984 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLD1 ENSG00000062822;ENSG00000142539 CDS Human other chr19:50919728 chr19:50919746 nonsynonymous SNV 0.999 4 39 hm5C_associated_SNPs_40952 0 0 1 0 2 POLD1 chr19:50919785 5'GT 50919785 Upstream 40bp
chr19 50919746 50919746 1 + C T UCEC 50919730 + 50919710 50919750 41 CAGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGCCCAT CAGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGTCCAT < 41bp 1 0.0724050712414814 1 0.0842882692813873 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLD1 ENSG00000062822;ENSG00000142539 CDS Human other chr19:50919730 chr19:50919746 nonsynonymous SNV 0.999 4 37 hm5C_associated_SNPs_40953 0 0 1 0 2 POLD1 chr19:50919653 3'AG 50919653 Downstream 94bp
chr19 50919746 50919746 1 + C T UCEC 50919730 + 50919710 50919750 41 CAGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGCCCAT CAGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGTCCAT < 41bp 1 0.0724050712414814 1 0.0842882692813873 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLD1 ENSG00000062822;ENSG00000142539 CDS Human other chr19:50919730 chr19:50919746 nonsynonymous SNV 0.999 4 37 hm5C_associated_SNPs_40953 0 0 1 0 2 POLD1 chr19:50919785 5'GT 50919785 Upstream 40bp
chr19 50919746 50919746 1 + C T UCEC 50919731 + 50919711 50919751 41 AGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGCCCATC AGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGTCCATC < 41bp 1 0.339522493736435 1 0.0838181674480438 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLD1 ENSG00000062822;ENSG00000142539 CDS Human other chr19:50919731 chr19:50919746 nonsynonymous SNV 0.999 4 36 hm5C_associated_SNPs_40954 0 0 1 0 2 POLD1 chr19:50919653 3'AG 50919653 Downstream 94bp
chr19 50919746 50919746 1 + C T UCEC 50919731 + 50919711 50919751 41 AGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGCCCATC AGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGTCCATC < 41bp 1 0.339522493736435 1 0.0838181674480438 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLD1 ENSG00000062822;ENSG00000142539 CDS Human other chr19:50919731 chr19:50919746 nonsynonymous SNV 0.999 4 36 hm5C_associated_SNPs_40954 0 0 1 0 2 POLD1 chr19:50919785 5'GT 50919785 Upstream 40bp
chr13 53036622 53036622 1 + A C UCEC 53036640 + 53036620 53036660 41 CCATGGCAGAAGAAGATGAACAAAGATTATTTACTGAAAAA CCCTGGCAGAAGAAGATGAACAAAGATTATTTACTGAAAAA < 41bp 1 0.492137552741761 1 0.429655075073242 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CKAP2 ENSG00000136108 CDS Human protein_coding chr13:53036640 chr13:53036622 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_40955 0 0 1 0 1 CKAP2 chr13:53036702 5'GT 53036702 Upstream 81bp
chr1 46496730 46496730 1 + A G UCEC 46496735 + 46496715 46496755 41 CACAGAGAGTGACTCAAGCCCTCCAATGACAGTGCGACGCC CACAGAGAGTGACTCGAGCCCTCCAATGACAGTGCGACGCC < 41bp 1 0.792593761437408 1 0.971921145915985 experiment 0.414812477125184 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MAST2 ENSG00000086015 CDS Human protein_coding chr1:46496735 chr1:46496730 synonymous SNV . 0 16 hm5C_associated_SNPs_40956 0 0 0 0 1 MAST2 chr1:46496679 3'AG 46496679 Downstream 52bp
chr17 7479907 7479907 1 + C T UCEC 7479892 + 7479872 7479912 41 TACATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAA TACATGGGCGCCTCCTGTCACGCCTGTATCGGGGGTACCAA < 41bp 1 0.625625062221003 1 0.0837382972240448 experiment 0.748749875557995 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479892 chr17:7479907 nonsynonymous SNV . 0 36 hm5C_associated_SNPs_40957 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 66bp
chr17 7479907 7479907 1 + C T UCEC 7479895 + 7479875 7479915 41 ATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAACGT ATGGGCGCCTCCTGTCACGCCTGTATCGGGGGTACCAACGT < 41bp 1 0.558302168267172 1 0.486173629760742 experiment 0.883395663465657 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479895 chr17:7479907 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_40958 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 66bp
chr17 7479907 7479907 1 + C T UCEC 7479909 + 7479889 7479929 41 TCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGC TCACGCCTGTATCGGGGGTACCAACGTGCGTGCTGAGGTGC < 41bp 1 0.121862389296438 1 0.169220685958862 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479909 chr17:7479907 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_40959 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 66bp
chr17 7479907 7479907 1 + C T UCEC 7479910 + 7479890 7479930 41 CACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGCA CACGCCTGTATCGGGGGTACCAACGTGCGTGCTGAGGTGCA < 41bp 1 0.544650959688061 1 0.355463087558746 experiment 0.910698080623877 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479910 chr17:7479907 nonsynonymous SNV . 0 18 hm5C_associated_SNPs_40960 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 66bp
chrX 47104880 47104880 1 + T C UCEC 47104877 + 47104857 47104897 41 AGACCCTGGAGAAGGAAAACCCCTGGTGAGGGGCCAGAGCG AGACCCTGGAGAAGGAAAACCCCCGGTGAGGGGCCAGAGCG < 41bp 1 0.516579225436385 1 0.367551743984222 experiment 0.96684154912723 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47104877 chrX:47104880 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_40961 0 0 1 0 1 USP11 chrX:47104881 5'GT 47104881 Upstream 2bp
chr1 201163380 201163380 1 + G A UCEC 201163360 + 201163340 201163380 41 CCCTGAAGGCTGCAGCACGCCGGACTTTGAGCAGAAGCCCG CCCTGAAGGCTGCAGCACGCCGGACTTTGAGCAGAAGCCCA < 41bp 1 0.310401011815732 1 0.325862050056458 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201163360 chr1:201163380 nonsynonymous SNV 0.958 0 41 hm5C_associated_SNPs_40963 0 0 0 0 1 IGFN1 chr1:201163282 3'AG 201163282 Downstream 99bp
chr2 202141611 202141611 1 + A G UCEC 202141594 + 202141574 202141614 41 AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAATCA AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAGTCA < 41bp 1 0.264841833405595 1 0.128590166568756 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CASP8 ENSG00000064012 CDS Human protein_coding chr2:202141594 chr2:202141611 nonsynonymous SNV 0.748 4 38 hm5C_associated_SNPs_40964 0 0 1 0 1 CASP8 chr2:202141550 3'AG 202141550 Downstream 62bp
chr15 69729046 69729046 1 + G A UCEC 69729054 + 69729034 69729074 41 ATGATGATTGATGAGTTTAACAAACAATGTAAGGGCAAAAC ATGATGATTGATAAGTTTAACAAACAATGTAAGGGCAAAAC < 41bp 1 0.163654574061368 1 0.297039926052094 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69729054 chr15:69729046 nonsynonymous SNV 0.333 1 13 hm5C_associated_SNPs_40965 0 0 1 0 1 KIF23 chr15:69729061 5'GT 69729061 Upstream 16bp
chr11 61491044 61491044 1 + G T UCEC 61491024 + 61491004 61491044 41 ACCAAGAGGAGGCAGCGTAACCTGCGGACCTACAACCTGCG ACCAAGAGGAGGCAGCGTAACCTGCGGACCTACAACCTGCT < 41bp 1 0.0880304383490829 1 0.0913488566875458 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61491024 chr11:61491044 nonsynonymous SNV 0.998 3 41 hm5C_associated_SNPs_40966 0 0 1 0 1 DAGLA chr11:61491044 5'GT 61491044 Upstream 1bp
chr12 123346288 123346288 1 + C T UCEC 123346273 + 123346253 123346293 41 CTTGACAAAAAGGATGGCATCTACCCAGCTCAACTCGTGAA CTTGACAAAAAGGATGGCATCTACCCAGCTCAACTTGTGAA < 41bp 1 0.158152155072023 1 0.0397652685642242 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HIP1R ENSG00000130787 CDS Human protein_coding chr12:123346273 chr12:123346288 synonymous SNV . 0 36 hm5C_associated_SNPs_40967 0 0 0 0 1 HIP1R chr12:123346253 3'AG 123346253 Downstream 36bp
chr14 64990104 64990104 1 + C T UCEC 64990092 + 64990072 64990112 41 GAGAGCGTCAGTTGCGACTGCACAATGATATGCACAAAGGC GAGAGCGTCAGTTGCGACTGCACAATGATATGTACAAAGGC < 41bp 1 0.648806478332533 1 0.498590469360352 experiment 0.702387043334935 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZBTB1 ENSG00000126804 CDS Human protein_coding chr14:64990092 chr14:64990104 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_40968 0 0 1 0 1 ZBTB1 chr14:64990120 5'GT 64990120 Upstream 17bp
chr19 52714672 52714672 1 + C T UCEC 52714692 + 52714672 52714712 41 CGCACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCG TGCACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCG < 41bp 1 0.441976855451623 1 0.0572250485420227 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52714692 chr19:52714672 nonsynonymous SNV 0.992 4 1 hm5C_associated_SNPs_40971 0 0 1 0 1 PPP2R1A chr19:52714745 5'GT 52714745 Upstream 74bp
chr9 88576932 88576932 1 + C T UCEC 88576946 + 88576926 88576966 41 AGATAACGTGGTTAGAAGGCCATTCACTGGCACAGACAGTA AGATAATGTGGTTAGAAGGCCATTCACTGGCACAGACAGTA < 41bp 1 0.0175860962049627 1 0.0999580323696136 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NAA35 ENSG00000135040 CDS Human protein_coding chr9:88576946 chr9:88576932 nonsynonymous SNV 0.995 4 7 hm5C_associated_SNPs_40973 0 0 1 0 1 NAA35 chr9:88576928 3'AG 88576928 Downstream 5bp
chr9 88576932 88576932 1 + C T UCEC 88576950 + 88576930 88576970 41 AACGTGGTTAGAAGGCCATTCACTGGCACAGACAGTATTTA AATGTGGTTAGAAGGCCATTCACTGGCACAGACAGTATTTA < 41bp 1 0.264760879310564 1 0.172812670469284 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NAA35 ENSG00000135040 CDS Human protein_coding chr9:88576950 chr9:88576932 nonsynonymous SNV 0.995 4 3 hm5C_associated_SNPs_40974 0 0 1 0 1 NAA35 chr9:88576928 3'AG 88576928 Downstream 5bp
chr18 34289279 34289279 1 + T C UCEC 34289293 + 34289273 34289313 41 TCTGCCTCCAGCGTCTCGTCCTCCAGCAGCACGTTGGAGAG TCTGCCCCCAGCGTCTCGTCCTCCAGCAGCACGTTGGAGAG < 41bp 1 0.779714762407397 1 0.983591675758362 experiment 0.440570475185206 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34289293 chr18:34289279 nonsynonymous SNV 0.816 4 7 hm5C_associated_SNPs_40976 0 0 0 0 1 FHOD3 chr18:34289354 5'GT 34289354 Upstream 76bp
chr1 145115808 145115808 1 + G A UCEC 145115809 + 145115789 145115829 41 ATGCGAAGTACTTGAACATGCATTCCACTTATGCCAAACTT ATGCGAAGTACTTGAACATACATTCCACTTATGCCAAACTT < 41bp 1 0.047236645854804 1 0.0589816570281982 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC22B ENSG00000223380 ncRNA_exonic Human other chr1:145115809 chr1:145115808 . . 0 20 hm5C_associated_SNPs_40977 0 0 1 0 1 SEC22B chr1:145115735 3'AG 145115735 Downstream 74bp
chr5 139917040 139917040 1 + C A UCEC 139917055 + 139917035 139917075 41 GATACCTCCCCCAATTGGAACAGAGAGACTGGCCCGAATTC GATACATCCCCCAATTGGAACAGAGAGACTGGCCCGAATTC < 41bp 1 0.317971365811865 1 0.449128776788712 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139917055 chr5:139917040 nonsynonymous SNV 0.996 4 6 hm5C_associated_SNPs_40978 0 0 1 0 1 ANKHD1;ANKHD1-EIF4EBP3 chr5:139916974 3'AG 139916974 Downstream 67bp
chr9 37424938 37424938 1 + C T UCEC 37424932 + 37424912 37424952 41 GCCCACGGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAA GCCCACGGCCTGCTCTGCCTCCTCTCTGACCACGTGGACAA < 41bp 1 0.235685464226441 1 0.0622031986713409 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424932 chr9:37424938 synonymous SNV . 0 27 hm5C_associated_SNPs_40980 0 0 1 0 2 GRHPR chr9:37424842 3'AG 37424842 Downstream 97bp
chr9 37424938 37424938 1 + C T UCEC 37424932 + 37424912 37424952 41 GCCCACGGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAA GCCCACGGCCTGCTCTGCCTCCTCTCTGACCACGTGGACAA < 41bp 1 0.235685464226441 1 0.0622031986713409 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424932 chr9:37424938 synonymous SNV . 0 27 hm5C_associated_SNPs_40980 0 0 1 0 2 GRHPR chr9:37424972 5'GT 37424972 Upstream 35bp
chr9 37424938 37424938 1 + C T UCEC 37424937 + 37424917 37424957 41 CGGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAGGA CGGCCTGCTCTGCCTCCTCTCTGACCACGTGGACAAGAGGA < 41bp 1 0.377820845424434 1 0.525250196456909 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424937 chr9:37424938 synonymous SNV . 0 22 hm5C_associated_SNPs_40981 0 0 1 0 2 GRHPR chr9:37424842 3'AG 37424842 Downstream 97bp
chr9 37424938 37424938 1 + C T UCEC 37424937 + 37424917 37424957 41 CGGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAGGA CGGCCTGCTCTGCCTCCTCTCTGACCACGTGGACAAGAGGA < 41bp 1 0.377820845424434 1 0.525250196456909 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424937 chr9:37424938 synonymous SNV . 0 22 hm5C_associated_SNPs_40981 0 0 1 0 2 GRHPR chr9:37424972 5'GT 37424972 Upstream 35bp
chr10 75529404 75529404 1 + G T UCEC 75529387 + 75529367 75529407 41 ATCCAGCATATCGGGGAGTCCTGAATAGCCCTGTGAAGGCT ATCCAGCATATCGGGGAGTCCTGAATAGCCCTGTGAATGCT < 41bp 1 0.75524662825815 1 0.78931999206543 experiment 0.4895067434837 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529387 chr10:75529404 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_40982 0 0 1 0 2 SEC24C chr10:75529373 3'AG 75529373 Downstream 32bp
chr10 75529404 75529404 1 + G T UCEC 75529387 + 75529367 75529407 41 ATCCAGCATATCGGGGAGTCCTGAATAGCCCTGTGAAGGCT ATCCAGCATATCGGGGAGTCCTGAATAGCCCTGTGAATGCT < 41bp 1 0.75524662825815 1 0.78931999206543 experiment 0.4895067434837 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529387 chr10:75529404 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_40982 0 0 1 0 2 SEC24C chr10:75529491 5'GT 75529491 Upstream 88bp
chr1 24022839 24022839 1 + T C UCEC 24022845 + 24022825 24022865 41 CTCTTTCAGTATGATGGGATCATCCTTCCTGGCAAATAAAT CTCTTTCAGTATGACGGGATCATCCTTCCTGGCAAATAAAT < 41bp 1 0.078145341099461 1 0.0429891049861908 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022845 chr1:24022839 synonymous SNV . 0 15 hm5C_associated_SNPs_40983 0 0 1 0 1 RPL11 chr1:24022834 3'AG 24022834 Downstream 6bp
chr1 24022839 24022839 1 + T C UCEC 24022848 + 24022828 24022868 41 TTTCAGTATGATGGGATCATCCTTCCTGGCAAATAAATTCC TTTCAGTATGACGGGATCATCCTTCCTGGCAAATAAATTCC < 41bp 1 0.0413553957399804 1 0.0572342276573181 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022848 chr1:24022839 synonymous SNV . 0 12 hm5C_associated_SNPs_40984 0 0 1 0 1 RPL11 chr1:24022834 3'AG 24022834 Downstream 6bp
chr5 1036434 1036434 1 + C T UCEC 1036447 + 1036427 1036467 41 GAGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGG GAGAACATGGAGCGCAGAAACCACTACCTGGACCTCGCCGG < 41bp 1 0.228592601458305 1 0.0819889008998871 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036447 chr5:1036434 nonsynonymous SNV 0.996 3 8 hm5C_associated_SNPs_40985 0 0 0 0 2 NKD2 chr5:1036372 3'AG 1036372 Downstream 63bp
chr5 1036434 1036434 1 + C T UCEC 1036447 + 1036427 1036467 41 GAGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGG GAGAACATGGAGCGCAGAAACCACTACCTGGACCTCGCCGG < 41bp 1 0.228592601458305 1 0.0819889008998871 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036447 chr5:1036434 nonsynonymous SNV 0.996 3 8 hm5C_associated_SNPs_40985 0 0 0 0 2 NKD2 chr5:1036499 5'GT 1036499 Upstream 66bp
chr5 1036434 1036434 1 + C T UCEC 1036448 + 1036428 1036468 41 AGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGGG AGAACATGGAGCGCAGAAACCACTACCTGGACCTCGCCGGG < 41bp 1 0.554667336821721 1 0.151871383190155 experiment 0.890665326356558 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036448 chr5:1036434 nonsynonymous SNV 0.996 3 7 hm5C_associated_SNPs_40986 0 0 0 0 2 NKD2 chr5:1036372 3'AG 1036372 Downstream 63bp
chr5 1036434 1036434 1 + C T UCEC 1036448 + 1036428 1036468 41 AGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGGG AGAACATGGAGCGCAGAAACCACTACCTGGACCTCGCCGGG < 41bp 1 0.554667336821721 1 0.151871383190155 experiment 0.890665326356558 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036448 chr5:1036434 nonsynonymous SNV 0.996 3 7 hm5C_associated_SNPs_40986 0 0 0 0 2 NKD2 chr5:1036499 5'GT 1036499 Upstream 66bp
chr12 95868078 95868078 1 + G A UCEC 95868059 + 95868039 95868079 41 CTCTACGGCTGAGGAAGCAGCCAAGAAAAAAAGACGAAAGA CTCTACGGCTGAGGAAGCAGCCAAGAAAAAAAGACGAAAAA < 41bp 1 0.350592447655141 1 0.492811590433121 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95868059 chr12:95868078 synonymous SNV . 0 40 hm5C_associated_SNPs_40987 0 0 1 0 1 METAP2 chr12:95868106 5'GT 95868106 Upstream 29bp
chr8 41355115 41355115 1 + G A UCEC 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCAAAGGTTGT < 41bp 1 0.129376881140519 1 0.173482447862625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355115 nonsynonymous SNV 0.904 4 33 hm5C_associated_SNPs_40988 0 0 1 0 2 GOLGA7 chr8:41355028 3'AG 41355028 Downstream 88bp
chr8 41355115 41355115 1 + G A UCEC 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCAAAGGTTGT < 41bp 1 0.129376881140519 1 0.173482447862625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355115 nonsynonymous SNV 0.904 4 33 hm5C_associated_SNPs_40988 0 0 1 0 2 GOLGA7 chr8:41355180 5'GT 41355180 Upstream 66bp
chr7 73927168 73927168 1 + G A UCEC 73927169 + 73927149 73927189 41 CCTTCCCACAGTGCTCAGCGCTGTCCAAACTGAACGCCGAG CCTTCCCACAGTGCTCAGCACTGTCCAAACTGAACGCCGAG < 41bp 1 0.101303229915148 1 0.350898563861847 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73927169 chr7:73927168 synonymous SNV . 0 20 hm5C_associated_SNPs_40989 0 0 1 0 1 GTF2IRD1 chr7:73927160 3'AG 73927160 Downstream 9bp
chr5 151183536 151183536 1 + C T UCEC 151183550 + 151183530 151183570 41 CGCCTTCGGGGACCTGGAGGCCCTCGAGGTGGGCTGGGTGG CGCCTTTGGGGACCTGGAGGCCCTCGAGGTGGGCTGGGTGG < 41bp 1 0.317282131970345 1 0.417029947042465 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control G3BP1 ENSG00000145907 CDS Human protein_coding chr5:151183550 chr5:151183536 nonsynonymous SNV 0.996 2 7 hm5C_associated_SNPs_40990 0 0 1 0 1 G3BP1 chr5:151183446 3'AG 151183446 Downstream 91bp
chr2 216995665 216995665 1 + G A UCEC 216995648 + 216995628 216995668 41 TCTCTAAAGTGGATGAGGAACAAATGAAATATAAATCGGAG TCTCTAAAGTGGATGAGGAACAAATGAAATATAAATCAGAG < 41bp 1 0.366411535090591 1 0.505388557910919 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout XRCC5 ENSG00000079246 CDS Human protein_coding chr2:216995648 chr2:216995665 synonymous SNV . 0 38 hm5C_associated_SNPs_40991 0 0 1 0 1 XRCC5 chr2:216995710 5'GT 216995710 Upstream 46bp
chr12 122620050 122620050 1 + G A UCEC 122620047 + 122620027 122620067 41 TCACTGCAGGCTCCTGGGGTCCCGGAGTTCCACAGCAGCAT TCACTGCAGGCTCCTGGGGTCCCAGAGTTCCACAGCAGCAT < 41bp 1 0.167279270594764 1 0.116553455591202 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MLXIP ENSG00000175727 CDS Human protein_coding chr12:122620047 chr12:122620050 synonymous SNV . 0 24 hm5C_associated_SNPs_40992 0 0 1 0 1 MLXIP chr12:122620036 3'AG 122620036 Downstream 15bp
chr9 135919203 135919203 1 + C T UCEC 135919215 + 135919195 135919235 41 CTCCGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC CTCCGGCCTGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC < 41bp 1 0.0486790464876451 1 0.0339957773685455 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919215 chr9:135919203 synonymous SNV . 0 9 hm5C_associated_SNPs_40993 0 0 1 0 1 GTF3C5 chr9:135919115 3'AG 135919115 Downstream 89bp
chr6 36566715 36566715 1 + G A UCEC 36566703 + 36566683 36566723 41 AAATCGTGGCCCACCTCCCTCTTGGGGTCGTCGCCCTCGAG AAATCGTGGCCCACCTCCCTCTTGGGGTCGTCACCCTCGAG < 41bp 1 0.737512589290353 1 0.32223317027092 experiment 0.524974821419294 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36566703 chr6:36566715 nonsynonymous SNV 0.996 4 33 hm5C_associated_SNPs_40995 0 0 1 0 2 SRSF3 chr6:36566626 3'AG 36566626 Downstream 90bp
chr6 36566715 36566715 1 + G A UCEC 36566703 + 36566683 36566723 41 AAATCGTGGCCCACCTCCCTCTTGGGGTCGTCGCCCTCGAG AAATCGTGGCCCACCTCCCTCTTGGGGTCGTCACCCTCGAG < 41bp 1 0.737512589290353 1 0.32223317027092 experiment 0.524974821419294 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36566703 chr6:36566715 nonsynonymous SNV 0.996 4 33 hm5C_associated_SNPs_40995 0 0 1 0 2 SRSF3 chr6:36566760 5'GT 36566760 Upstream 46bp
chr16 22337572 22337572 1 + C T UCEC 22337560 + 22337540 22337580 41 TCGGACCGCATGCTACAGGACACGGTGCTGGCCGCCGGTTG TCGGACCGCATGCTACAGGACACGGTGCTGGCTGCCGGTTG < 41bp 1 0.753912602231091 1 0.135055184364319 experiment 0.492174795537819 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22337560 chr16:22337572 synonymous SNV . 0 33 hm5C_associated_SNPs_40999 0 0 1 0 1 POLR3E chr16:22337599 5'GT 22337599 Upstream 28bp
chr1 201185648 201185648 1 + G A UCEC 201185656 + 201185636 201185676 41 GCGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGC GCGTCTGCCTCCACTGGCGGCCCCCAAGGGACAATGGGGGC < 41bp 1 0.022028795417025 1 0.219485372304916 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185656 chr1:201185648 nonsynonymous SNV 0.584 0 13 hm5C_associated_SNPs_41000 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 67bp
chr1 201185648 201185648 1 + G A UCEC 201185657 + 201185637 201185677 41 CGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCC CGTCTGCCTCCACTGGCGGCCCCCAAGGGACAATGGGGGCC < 41bp 1 0.14891533490928 1 0.31002539396286 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185657 chr1:201185648 nonsynonymous SNV 0.584 0 12 hm5C_associated_SNPs_41001 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 67bp
chr1 201185648 201185648 1 + G A UCEC 201185658 + 201185638 201185678 41 GTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCG GTCTGCCTCCACTGGCGGCCCCCAAGGGACAATGGGGGCCG < 41bp 1 0.275361604205717 1 0.502762615680695 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185658 chr1:201185648 nonsynonymous SNV 0.584 0 11 hm5C_associated_SNPs_41002 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 67bp
chr1 201185648 201185648 1 + G A UCEC 201185659 + 201185639 201185679 41 TCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCGG TCTGCCTCCACTGGCGGCCCCCAAGGGACAATGGGGGCCGG < 41bp 1 0.103179835212872 1 0.539940893650055 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185659 chr1:201185648 nonsynonymous SNV 0.584 0 10 hm5C_associated_SNPs_41003 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 67bp
chr1 201185648 201185648 1 + G A UCEC 201185660 + 201185640 201185680 41 CTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCGGA CTGCCTCCACTGGCGGCCCCCAAGGGACAATGGGGGCCGGA < 41bp 1 0.401770358086287 1 0.839398980140686 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185660 chr1:201185648 nonsynonymous SNV 0.584 0 9 hm5C_associated_SNPs_41004 0 0 0 0 1 IGFN1 chr1:201185582 3'AG 201185582 Downstream 67bp
chr11 12549463 12549463 1 + C T UCEC 12549477 + 12549457 12549497 41 CCGTAACGTGGAGTGAGGGGCTGCCCTGGGCCCACCACTGC CCGTAATGTGGAGTGAGGGGCTGCCCTGGGCCCACCACTGC < 41bp 1 0.268148528809414 1 0.167675852775574 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PARVA ENSG00000197702 CDS Human protein_coding chr11:12549477 chr11:12549463 synonymous SNV . 0 7 hm5C_associated_SNPs_41005 0 0 0 0 1 PARVA chr11:12549396 3'AG 12549396 Downstream 68bp
chr1 55524244 55524244 1 + G A UCEC 55524235 + 55524215 55524255 41 GCCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAG GCCTACACGGATGGCCACAGCCGTCGCCCACTGCGCCCCAG < 41bp 1 0.152363759325526 1 0.0812097489833832 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524235 chr1:55524244 nonsynonymous SNV 0.001 0 30 hm5C_associated_SNPs_41006 0 0 1 0 2 PCSK9 chr1:55524172 3'AG 55524172 Downstream 73bp
chr1 55524244 55524244 1 + G A UCEC 55524235 + 55524215 55524255 41 GCCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAG GCCTACACGGATGGCCACAGCCGTCGCCCACTGCGCCCCAG < 41bp 1 0.152363759325526 1 0.0812097489833832 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524235 chr1:55524244 nonsynonymous SNV 0.001 0 30 hm5C_associated_SNPs_41006 0 0 1 0 2 PCSK9 chr1:55524320 5'GT 55524320 Upstream 77bp
chr1 55524244 55524244 1 + G A UCEC 55524236 + 55524216 55524256 41 CCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAGA CCTACACGGATGGCCACAGCCGTCGCCCACTGCGCCCCAGA < 41bp 1 0.509750265532413 1 0.124994188547134 experiment 0.980499468935173 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524236 chr1:55524244 nonsynonymous SNV 0.001 0 29 hm5C_associated_SNPs_41007 0 0 1 0 2 PCSK9 chr1:55524172 3'AG 55524172 Downstream 73bp
chr1 55524244 55524244 1 + G A UCEC 55524236 + 55524216 55524256 41 CCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAGA CCTACACGGATGGCCACAGCCGTCGCCCACTGCGCCCCAGA < 41bp 1 0.509750265532413 1 0.124994188547134 experiment 0.980499468935173 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524236 chr1:55524244 nonsynonymous SNV 0.001 0 29 hm5C_associated_SNPs_41007 0 0 1 0 2 PCSK9 chr1:55524320 5'GT 55524320 Upstream 77bp
chr19 1453498 1453498 1 + G A UCEC 1453489 + 1453469 1453509 41 TCCAGCCGCCCACCCTGGGCCCGGAGCCTGCCGCCCGGACC TCCAGCCGCCCACCCTGGGCCCGGAGCCTACCGCCCGGACC < 41bp 1 0.358728657546422 1 0.479278385639191 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453489 chr19:1453498 nonsynonymous SNV 0.010 1 30 hm5C_associated_SNPs_41008 0 0 0 0 1 APC2 chr19:1453430 3'AG 1453430 Downstream 69bp
chr3 178947156 178947156 1 + C T UCEC 178947150 + 178947130 178947170 41 ACTATTATGCAAATTCAGTGCAAAGGCGGCTTGAAAGGTGC ACTATTATGCAAATTCAGTGCAAAGGTGGCTTGAAAGGTGC < 41bp 1 0.51744910217852 1 0.257637083530426 experiment 0.96510179564296 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178947150 chr3:178947156 synonymous SNV . 0 27 hm5C_associated_SNPs_41009 0 0 0 0 2 PIK3CA chr3:178947060 3'AG 178947060 Downstream 97bp
chr3 178947156 178947156 1 + C T UCEC 178947150 + 178947130 178947170 41 ACTATTATGCAAATTCAGTGCAAAGGCGGCTTGAAAGGTGC ACTATTATGCAAATTCAGTGCAAAGGTGGCTTGAAAGGTGC < 41bp 1 0.51744910217852 1 0.257637083530426 experiment 0.96510179564296 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178947150 chr3:178947156 synonymous SNV . 0 27 hm5C_associated_SNPs_41009 0 0 0 0 2 PIK3CA chr3:178947230 5'GT 178947230 Upstream 75bp
chr7 101891773 101891773 1 + G A UCEC 101891755 + 101891735 101891775 41 GGGAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGC GGGAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCAGC < 41bp 1 0.615844917325688 1 0.705721795558929 experiment 0.768310165348624 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891755 chr7:101891773 synonymous SNV . 0 39 hm5C_associated_SNPs_41010 0 0 1 0 1 CUX1 chr7:101891692 3'AG 101891692 Downstream 82bp
chr7 101891773 101891773 1 + G A UCEC 101891757 + 101891737 101891777 41 GAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGCCC GAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCAGCCC < 41bp 1 0.309233012061491 1 0.527885138988495 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891757 chr7:101891773 synonymous SNV . 0 37 hm5C_associated_SNPs_41011 0 0 1 0 1 CUX1 chr7:101891692 3'AG 101891692 Downstream 82bp
chr7 101891773 101891773 1 + G A UCEC 101891758 + 101891738 101891778 41 AGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGCCCG AGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCAGCCCG < 41bp 1 0.655865224866298 1 0.809045970439911 experiment 0.688269550267405 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891758 chr7:101891773 synonymous SNV . 0 36 hm5C_associated_SNPs_41012 0 0 1 0 1 CUX1 chr7:101891692 3'AG 101891692 Downstream 82bp
chr15 69718689 69718689 1 + C T UCEC 69718677 + 69718657 69718697 41 ATTTCTCTGTTGTCCTAGGCCAGAAAAAGAGACGTATTGCT ATTTCTCTGTTGTCCTAGGCCAGAAAAAGAGATGTATTGCT < 41bp 1 0.541645161414894 1 0.531281352043152 experiment 0.916709677170211 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69718677 chr15:69718689 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_41013 0 0 1 0 1 KIF23 chr15:69718675 3'AG 69718675 Downstream 15bp
chr19 13004381 13004381 1 + C T UCEC 13004401 + 13004381 13004421 41 CGATGAGTGTCCAGTCCTCCCTCGTCATGCACCCTATCTAT TGATGAGTGTCCAGTCCTCCCTCGTCATGCACCCTATCTAT < 41bp 1 0.717636002243934 1 0.0483537614345551 experiment 0.564727995512132 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13004401 chr19:13004381 nonsynonymous SNV 0.309 1 1 hm5C_associated_SNPs_41014 0 0 0 0 2 GCDH chr19:13004297 3'AG 13004297 Downstream 85bp
chr19 13004381 13004381 1 + C T UCEC 13004401 + 13004381 13004421 41 CGATGAGTGTCCAGTCCTCCCTCGTCATGCACCCTATCTAT TGATGAGTGTCCAGTCCTCCCTCGTCATGCACCCTATCTAT < 41bp 1 0.717636002243934 1 0.0483537614345551 experiment 0.564727995512132 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13004401 chr19:13004381 nonsynonymous SNV 0.309 1 1 hm5C_associated_SNPs_41014 0 0 0 0 2 GCDH chr19:13004467 5'GT 13004467 Upstream 87bp
chr1 9416592 9416592 1 + T C UCEC 9416605 + 9416585 9416625 41 TAGTGAGTGCCGTCTGGGGCCACTGTGAGATCCGAATGCGC TAGTGAGCGCCGTCTGGGGCCACTGTGAGATCCGAATGCGC < 41bp 1 0.209787020942638 1 0.1288723051548 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SPSB1 ENSG00000171621 CDS Human protein_coding chr1:9416605 chr1:9416592 synonymous SNV . 0 8 hm5C_associated_SNPs_41015 0 0 0 0 1 SPSB1 chr1:9416644 5'GT 9416644 Upstream 53bp
chr10 94392246 94392246 1 + C T UCEC 94392243 + 94392223 94392263 41 ACTTATTTTTAAAAATATAGCTGCTTAACACAGTTGAAGAA ACTTATTTTTAAAAATATAGCTGTTTAACACAGTTGAAGAA < 41bp 1 0.128783863189232 1 0.0622071325778961 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF11 ENSG00000138160 CDS Human protein_coding chr10:94392243 chr10:94392246 nonsynonymous SNV 0.955 4 24 hm5C_associated_SNPs_41016 0 0 1 0 1 KIF11 chr10:94392243 3'AG 94392243 Downstream 4bp
chr10 70962697 70962697 1 + A G UCEC 70962706 + 70962686 70962726 41 AAATTTTCTGCAGAGTTGATCCAGCATATTCCACTAAGTCT AAATTTTCTGCGGAGTTGATCCAGCATATTCCACTAAGTCT < 41bp 1 0.175906918191586 1 0.830444276332855 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SUPV3L1 ENSG00000156502 CDS Human protein_coding chr10:70962706 chr10:70962697 synonymous SNV . 0 12 hm5C_associated_SNPs_41017 0 0 1 0 1 SUPV3L1 chr10:70962623 3'AG 70962623 Downstream 75bp
chr3 191074905 191074905 1 + C T UCEC 191074906 + 191074886 191074926 41 ATTTTGCTGTCCTGGAGGACCACACCCTGGCTCACAGCCTG ATTTTGCTGTCCTGGAGGATCACACCCTGGCTCACAGCCTG < 41bp 1 0.521334976834512 1 0.208775401115417 experiment 0.957330046330977 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CCDC50 ENSG00000152492 CDS Human protein_coding chr3:191074906 chr3:191074905 synonymous SNV . 0 20 hm5C_associated_SNPs_41018 0 0 1 0 1 CCDC50 chr3:191074877 3'AG 191074877 Downstream 29bp
chr10 128768998 128768998 1 + G A UCEC 128768993 + 128768973 128769013 41 TAACTATGATGCCAGAGGAGCGGATGAACTTTCTTTACAGA TAACTATGATGCCAGAGGAGCGGATAAACTTTCTTTACAGA < 41bp 1 0.059291204150939 1 0.391879379749298 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:128768993 chr10:128768998 nonsynonymous SNV 0.990 1 26 hm5C_associated_SNPs_41019 0 0 1 0 2 DOCK1 chr10:128768966 3'AG 128768966 Downstream 33bp
chr10 128768998 128768998 1 + G A UCEC 128768993 + 128768973 128769013 41 TAACTATGATGCCAGAGGAGCGGATGAACTTTCTTTACAGA TAACTATGATGCCAGAGGAGCGGATAAACTTTCTTTACAGA < 41bp 1 0.059291204150939 1 0.391879379749298 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:128768993 chr10:128768998 nonsynonymous SNV 0.990 1 26 hm5C_associated_SNPs_41019 0 0 1 0 2 DOCK1 chr10:128769049 5'GT 128769049 Upstream 52bp
chr6 37141801 37141801 1 + T A UCEC 37141808 + 37141788 37141828 41 CATGGATGCAAGATGTTCTCCTGCCCCAGGAAACTGCTGAG CATGGATGCAAGAAGTTCTCCTGCCCCAGGAAACTGCTGAG < 41bp 1 0.301668261190158 1 0.175362348556519 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PIM1 ENSG00000137193 CDS Human protein_coding chr6:37141808 chr6:37141801 nonsynonymous SNV 0.995 0 14 hm5C_associated_SNPs_41020 0 0 1 0 1 PIM1 chr6:37141710 3'AG 37141710 Downstream 92bp
chr14 93277897 93277897 1 + G A UCEC 93277898 + 93277878 93277918 41 TATAAAAATTTGTCACAGAGCGAGTTTGCTGCACGCCTTAA TATAAAAATTTGTCACAGAACGAGTTTGCTGCACGCCTTAA < 41bp 1 0.582997533096548 1 0.204662472009659 experiment 0.834004933806904 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93277898 chr14:93277897 nonsynonymous SNV 0.996 0 20 hm5C_associated_SNPs_41022 0 0 0 0 1 GOLGA5 chr14:93277896 3'AG 93277896 Downstream 2bp
chr3 126751399 126751399 1 + C T UCEC 126751389 + 126751369 126751409 41 CTGGGCAAGGACTCACCCTCCAACAAGCTGCTCTACGCCAA CTGGGCAAGGACTCACCCTCCAACAAGCTGTTCTACGCCAA < 41bp 1 0.414832974137046 1 0.639071822166443 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126751389 chr3:126751399 nonsynonymous SNV 0.991 4 31 hm5C_associated_SNPs_41023 0 0 1 0 1 PLXNA1 chr3:126751442 5'GT 126751442 Upstream 44bp
chr17 27027980 27027980 1 + C T UCEC 27027991 + 27027971 27028011 41 CCAGCCCAGCAGCCAGTGGCCACACCACTAATGACCCCTAG CCAGCCCAGTAGCCAGTGGCCACACCACTAATGACCCCTAG < 41bp 1 0.2311479955148 1 0.314044624567032 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27027991 chr17:27027980 stopgain 1.000 1 10 hm5C_associated_SNPs_41024 0 0 1 0 1 SUPT6H chr17:27027959 3'AG 27027959 Downstream 22bp
chr13 76382253 76382253 1 + T C UCEC 76382234 + 76382214 76382254 41 GGAACTACCGTGCCTCCCATCAGTTTCACCCCTGGCCCCTG GGAACTACCGTGCCTCCCATCAGTTTCACCCCTGGCCCCCG < 41bp 1 0.266409299644234 1 0.776997566223145 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76382234 chr13:76382253 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_41025 0 0 1 0 1 LMO7 chr13:76382335 5'GT 76382335 Upstream 83bp
chr11 118277730 118277730 1 + C T UCEC 118277750 + 118277730 118277770 41 CTGAGATCCCTAGAGCTATTCAGAGCCTGAAAAAAATAGTC TTGAGATCCCTAGAGCTATTCAGAGCCTGAAAAAAATAGTC < 41bp 1 0.70773623435976 1 0.790025115013123 experiment 0.584527531280479 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ATP5L ENSG00000167283 CDS Human protein_coding chr11:118277750 chr11:118277730 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_41026 0 0 1 0 2 ATP5L chr11:118277652 3'AG 118277652 Downstream 79bp
chr11 118277730 118277730 1 + C T UCEC 118277750 + 118277730 118277770 41 CTGAGATCCCTAGAGCTATTCAGAGCCTGAAAAAAATAGTC TTGAGATCCCTAGAGCTATTCAGAGCCTGAAAAAAATAGTC < 41bp 1 0.70773623435976 1 0.790025115013123 experiment 0.584527531280479 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ATP5L ENSG00000167283 CDS Human protein_coding chr11:118277750 chr11:118277730 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_41026 0 0 1 0 2 ATP5L chr11:118277812 5'GT 118277812 Upstream 83bp
chr22 32498091 32498091 1 + G A UCEC 32498104 + 32498084 32498124 41 GGGAGCTGCATGGAGCCCAGCAACTGTCCCACGATTATCTG GGGAGCTACATGGAGCCCAGCAACTGTCCCACGATTATCTG < 41bp 1 0.283528334678833 1 0.246879488229752 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32498104 chr22:32498091 nonsynonymous SNV 0.994 4 8 hm5C_associated_SNPs_41027 0 0 0 0 1 SLC5A1 chr22:32498009 3'AG 32498009 Downstream 83bp
chr20 30386283 30386283 1 + G A UCEC 30386297 + 30386277 30386317 41 AGCCCAGCAGTTGGAGGAGGCCAGACTACAGGAGGAAGAGC AGCCCAACAGTTGGAGGAGGCCAGACTACAGGAGGAAGAGC < 41bp 1 0.534590054011699 1 0.244136601686478 experiment 0.930819891976602 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30386297 chr20:30386283 synonymous SNV . 0 7 hm5C_associated_SNPs_41028 0 0 1 0 1 TPX2 chr20:30386355 5'GT 30386355 Upstream 73bp
chr14 97018849 97018849 1 + C T UCEC 97018858 + 97018838 97018878 41 TTGACAGCTCTCAATGACAGCAGCCTCGACTTGTCTATGGA TTGACAGCTCTTAATGACAGCAGCCTCGACTTGTCTATGGA < 41bp 1 0.216557825917313 1 0.205750554800034 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97018858 chr14:97018849 synonymous SNV . 0 12 hm5C_associated_SNPs_41029 0 0 1 0 1 PAPOLA chr14:97018817 3'AG 97018817 Downstream 33bp
chr7 100204250 100204250 1 + C G UCEC 100204239 + 100204219 100204259 41 TCCGGAGAAAACAGAGGAATCTCCTTCAGCCCCTGGTGAGT TCCGGAGAAAACAGAGGAATCTCCTTCAGCCGCTGGTGAGT < 41bp 1 0.374959499474455 1 0.175954431295395 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100204239 chr7:100204250 nonsynonymous SNV 0.003 1 32 hm5C_associated_SNPs_41035 0 0 1 0 1 PCOLCE chr7:100204253 5'GT 100204253 Upstream 4bp
chr3 37583987 37583987 1 + C T UCEC 37583980 + 37583960 37584000 41 GGCCAGATGCCCAGGGTCTACTTTGTGCTGCTGGGAGAGAC GGCCAGATGCCCAGGGTCTACTTTGTGTTGCTGGGAGAGAC < 41bp 1 0.272707243435663 1 0.10257014632225 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37583980 chr3:37583987 synonymous SNV . 0 28 hm5C_associated_SNPs_41036 0 0 0 0 2 ITGA9 chr3:37583916 3'AG 37583916 Downstream 72bp
chr3 37583987 37583987 1 + C T UCEC 37583980 + 37583960 37584000 41 GGCCAGATGCCCAGGGTCTACTTTGTGCTGCTGGGAGAGAC GGCCAGATGCCCAGGGTCTACTTTGTGTTGCTGGGAGAGAC < 41bp 1 0.272707243435663 1 0.10257014632225 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37583980 chr3:37583987 synonymous SNV . 0 28 hm5C_associated_SNPs_41036 0 0 0 0 2 ITGA9 chr3:37584076 5'GT 37584076 Upstream 90bp
chr1 32626302 32626302 1 + A G UCEC 32626288 + 32626268 32626308 41 ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTGACGTGA < 41bp 1 0.176402896318392 1 0.460446953773499 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32626288 chr1:32626302 synonymous SNV . 0 35 hm5C_associated_SNPs_41037 0 0 1 0 3 KPNA6 chr1:32626216 3'AG 32626216 Downstream 87bp
chr1 32626302 32626302 1 + A G UCEC 32626288 + 32626268 32626308 41 ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTGACGTGA < 41bp 1 0.176402896318392 1 0.460446953773499 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32626288 chr1:32626302 synonymous SNV . 0 35 hm5C_associated_SNPs_41037 0 0 1 0 3 KPNA6 chr1:32626220 3'AG 32626220 Downstream 83bp
chr1 32626302 32626302 1 + A G UCEC 32626288 + 32626268 32626308 41 ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTGACGTGA < 41bp 1 0.176402896318392 1 0.460446953773499 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32626288 chr1:32626302 synonymous SNV . 0 35 hm5C_associated_SNPs_41037 0 0 1 0 3 KPNA6 chr1:32626304 5'GT 32626304 Upstream 3bp
chr1 36645658 36645658 1 + G A UCEC 36645659 + 36645639 36645679 41 AAGCTGTGGTGCAGTCCCCGCAGGTCACAGGTAGATCTCCT AAGCTGTGGTGCAGTCCCCACAGGTCACAGGTAGATCTCCT < 41bp 1 0.396025377460257 1 0.918918251991272 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP7D1 ENSG00000116871 CDS Human protein_coding chr1:36645659 chr1:36645658 synonymous SNV . 0 20 hm5C_associated_SNPs_41041 0 0 1 0 1 MAP7D1 chr1:36645668 5'GT 36645668 Upstream 11bp
chr11 67818112 67818112 1 + C T UCEC 67818104 + 67818084 67818124 41 GGTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGC GGTGATGGAGGGACTCTCAGCCTTCCTGTACGCCCTGCGGC < 41bp 1 0.0377455802313071 1 0.271637856960297 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818104 chr11:67818112 nonsynonymous SNV 0.994 5 29 hm5C_associated_SNPs_41042 0 0 1 0 2 TCIRG1 chr11:67818131 5'GT 67818131 Upstream 20bp
chr11 67818112 67818112 1 + C T UCEC 67818104 + 67818084 67818124 41 GGTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGC GGTGATGGAGGGACTCTCAGCCTTCCTGTACGCCCTGCGGC < 41bp 1 0.0377455802313071 1 0.271637856960297 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818104 chr11:67818112 nonsynonymous SNV 0.994 5 29 hm5C_associated_SNPs_41042 0 0 1 0 2 TCIRG1 chr11:67818208 5'GT 67818208 Upstream 97bp
chr11 67818112 67818112 1 + C T UCEC 67818105 + 67818085 67818125 41 GTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGCT GTGATGGAGGGACTCTCAGCCTTCCTGTACGCCCTGCGGCT < 41bp 1 0.132741351942865 1 0.450376033782959 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818105 chr11:67818112 nonsynonymous SNV 0.994 5 28 hm5C_associated_SNPs_41043 0 0 1 0 2 TCIRG1 chr11:67818131 5'GT 67818131 Upstream 20bp
chr11 67818112 67818112 1 + C T UCEC 67818105 + 67818085 67818125 41 GTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGCT GTGATGGAGGGACTCTCAGCCTTCCTGTACGCCCTGCGGCT < 41bp 1 0.132741351942865 1 0.450376033782959 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818105 chr11:67818112 nonsynonymous SNV 0.994 5 28 hm5C_associated_SNPs_41043 0 0 1 0 2 TCIRG1 chr11:67818208 5'GT 67818208 Upstream 97bp
chr2 239038788 239038788 1 + G A UCEC 239038799 + 239038779 239038819 41 GGAGCTCAGGCCCCACGGAGCAGGCGGCCTGGAGGTACTCA GGAGCTCAGACCCCACGGAGCAGGCGGCCTGGAGGTACTCA < 41bp 1 0.498147403784919 1 0.881080329418182 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ESPNL ENSG00000144488 CDS Human protein_coding chr2:239038799 chr2:239038788 nonsynonymous SNV 0.000 0 10 hm5C_associated_SNPs_41045 0 0 0 0 1 ESPNL chr2:239038769 3'AG 239038769 Downstream 20bp
chr20 49458397 49458397 1 + G A UCEC 49458380 + 49458360 49458400 41 GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGCGGAG GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGCAGAG < 41bp 1 0.294565245555403 1 0.0512876510620117 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49458380 chr20:49458397 nonsynonymous SNV 0.444 0 38 hm5C_associated_SNPs_41046 0 0 1 0 2 BCAS4 chr20:49458303 3'AG 49458303 Downstream 95bp
chr20 49458397 49458397 1 + G A UCEC 49458380 + 49458360 49458400 41 GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGCGGAG GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGCAGAG < 41bp 1 0.294565245555403 1 0.0512876510620117 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49458380 chr20:49458397 nonsynonymous SNV 0.444 0 38 hm5C_associated_SNPs_41046 0 0 1 0 2 BCAS4 chr20:49458437 5'GT 49458437 Upstream 41bp
chr4 103522093 103522093 1 + T C UCEC 103522101 + 103522081 103522121 41 ATTCTCAACTTGTGAGGGATCTACTAGAAGTCACATCTGGT ATTCTCAACTTGCGAGGGATCTACTAGAAGTCACATCTGGT < 41bp 1 0.158285475359354 1 0.453214138746262 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103522101 chr4:103522093 nonsynonymous SNV 1.000 0 13 hm5C_associated_SNPs_41047 0 0 1 0 1 NFKB1 chr4:103522166 5'GT 103522166 Upstream 74bp
chr9 131247115 131247115 1 + G A UCEC 131247109 + 131247089 131247129 41 CCATCCGAGCCCAGAAGGAGCGAGCCGAGAAGAGCGAGGAG CCATCCGAGCCCAGAAGGAGCGAGCCAAGAAGAGCGAGGAG < 41bp 1 0.434720959549174 1 0.504312098026276 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ODF2 ENSG00000136811 CDS Human protein_coding chr9:131247109 chr9:131247115 nonsynonymous SNV 0.998 3 27 hm5C_associated_SNPs_41048 0 0 1 0 1 ODF2 chr9:131247165 5'GT 131247165 Upstream 51bp
chr7 35943879 35943879 1 + C T UCEC 35943897 + 35943877 35943917 41 AACAAGAAGAAAGGGAAGATCTTTTAAACTCTCTATTGACC AATAAGAAGAAAGGGAAGATCTTTTAAACTCTCTATTGACC < 41bp 1 0.0632579530425052 1 0.09201979637146 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SEPT7 ENSG00000122545 CDS Human protein_coding chr7:35943897 chr7:35943879 synonymous SNV . 0 3 hm5C_associated_SNPs_41051 0 0 1 0 1 SEPT7 chr7:35943864 3'AG 35943864 Downstream 16bp
chr3 20019895 20019895 1 + G T UCEC 20019890 + 20019870 20019910 41 TGTAAATGAAATATTCATGGCAATAGGTAAGATTAATATCT TGTAAATGAAATATTCATGGCAATATGTAAGATTAATATCT < 41bp 1 0.19202739461668 1 0.161749422550201 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019890 chr3:20019895 nonsynonymous SNV 0.999 3 26 hm5C_associated_SNPs_41052 0 0 0 4 2 RAB5A chr3:20019802 3'AG 20019802 Downstream 94bp
chr3 20019895 20019895 1 + G T UCEC 20019890 + 20019870 20019910 41 TGTAAATGAAATATTCATGGCAATAGGTAAGATTAATATCT TGTAAATGAAATATTCATGGCAATATGTAAGATTAATATCT < 41bp 1 0.19202739461668 1 0.161749422550201 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019890 chr3:20019895 nonsynonymous SNV 0.999 3 26 hm5C_associated_SNPs_41052 0 0 0 4 2 RAB5A chr3:20019895 5'GT 20019895 Upstream 1bp
chr1 24018319 24018319 1 + G A UCEC 24018301 + 24018281 24018321 41 CGGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGCGGT CGGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGCAGT < 41bp 1 0.292134094221214 1 0.245328694581985 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24018301 chr1:24018319 synonymous SNV . 0 39 hm5C_associated_SNPs_41053 0 0 1 0 1 RPL11 chr1:24018319 5'GT 24018319 Upstream 1bp
chr1 24018319 24018319 1 + G A UCEC 24018302 + 24018282 24018322 41 GGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGCGGTG GGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGCAGTG < 41bp 1 0.44433471684596 1 0.0862075388431549 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24018302 chr1:24018319 synonymous SNV . 0 38 hm5C_associated_SNPs_41054 0 0 1 0 1 RPL11 chr1:24018319 5'GT 24018319 Upstream 1bp
chr6 33652660 33652660 1 + C T UCEC 33652675 + 33652655 33652695 41 AAGATCTTCCAGGAGAGCATCGGCCTGGCCATCCACCTGCT AAGATTTTCCAGGAGAGCATCGGCCTGGCCATCCACCTGCT < 41bp 1 0.226500244442919 1 0.331081449985504 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33652675 chr6:33652660 synonymous SNV . 0 6 hm5C_associated_SNPs_41058 0 0 1 0 1 ITPR3 chr6:33652720 5'GT 33652720 Upstream 61bp
chr13 98654815 98654815 1 + A C UCEC 98654834 + 98654814 98654854 41 TAAATTTTGTTTTACTTTTTCTCCAGGATCCTGTAAGTACC TCAATTTTGTTTTACTTTTTCTCCAGGATCCTGTAAGTACC < 41bp 1 0.637039837715714 1 0.916033506393433 experiment 0.725920324568571 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IPO5 ENSG00000065150 CDS Human protein_coding chr13:98654834 chr13:98654815 synonymous SNV . 0 2 hm5C_associated_SNPs_41059 0 0 1 0 2 IPO5 chr13:98654721 3'AG 98654721 Downstream 95bp
chr13 98654815 98654815 1 + A C UCEC 98654834 + 98654814 98654854 41 TAAATTTTGTTTTACTTTTTCTCCAGGATCCTGTAAGTACC TCAATTTTGTTTTACTTTTTCTCCAGGATCCTGTAAGTACC < 41bp 1 0.637039837715714 1 0.916033506393433 experiment 0.725920324568571 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IPO5 ENSG00000065150 CDS Human protein_coding chr13:98654834 chr13:98654815 synonymous SNV . 0 2 hm5C_associated_SNPs_41059 0 0 1 0 2 IPO5 chr13:98654845 5'GT 98654845 Upstream 31bp
chr4 37857244 37857244 1 + A G UCEC 37857261 + 37857241 37857281 41 AGTAAAAGCAGCCAAATGATCACCTTCACCTTTGCTAATGG AGTGAAAGCAGCCAAATGATCACCTTCACCTTTGCTAATGG < 41bp 1 0.682069857462538 1 0.158241450786591 experiment 0.635860285074923 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PGM2 ENSG00000169299 CDS Human protein_coding chr4:37857261 chr4:37857244 nonsynonymous SNV 0.998 1 4 hm5C_associated_SNPs_41060 0 0 0 0 1 PGM2 chr4:37857229 3'AG 37857229 Downstream 16bp
chr9 35733129 35733129 1 + C T UCEC 35733112 + 35733092 35733132 41 CATGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTAT CATGACCACACCTACTCCCTCCCACGGGAAACTGTCTTTAT < 41bp 1 0.111482682458674 1 0.0815618336200714 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733112 chr9:35733129 nonsynonymous SNV 0.028 1 38 hm5C_associated_SNPs_41061 0 0 1 0 1 CREB3 chr9:35733140 5'GT 35733140 Upstream 12bp
chr9 35733129 35733129 1 + C T UCEC 35733113 + 35733093 35733133 41 ATGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTATG ATGACCACACCTACTCCCTCCCACGGGAAACTGTCTTTATG < 41bp 1 0.12715172408499 1 0.206052452325821 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733113 chr9:35733129 nonsynonymous SNV 0.028 1 37 hm5C_associated_SNPs_41062 0 0 1 0 1 CREB3 chr9:35733140 5'GT 35733140 Upstream 12bp
chr9 19336755 19336755 1 + G A UCEC 19336770 + 19336750 19336790 41 ATGATGCTAACAATGGGGAGCACACAGTCTTCGTCAGAGAT ATGATACTAACAATGGGGAGCACACAGTCTTCGTCAGAGAT < 41bp 1 0.0440099699237594 1 0.255750805139542 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DENND4C ENSG00000137145 CDS Human protein_coding chr9:19336770 chr9:19336755 nonsynonymous SNV 1.000 0 6 hm5C_associated_SNPs_41063 0 0 1 0 1 DENND4C chr9:19336830 5'GT 19336830 Upstream 76bp
chr11 67052434 67052434 1 + C T UCEC 67052439 + 67052419 67052459 41 AACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCCCGGTAAG AACCGCCTCGAGTGGTGGGGCGAGGGCGAGGCCCCGGTAAG < 41bp 1 0.690321353112961 1 0.921181797981262 experiment 0.619357293774078 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052439 chr11:67052434 nonsynonymous SNV 0.983 3 16 hm5C_associated_SNPs_41064 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 21bp
chr11 67052434 67052434 1 + C T UCEC 67052450 + 67052430 67052470 41 GTGGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCG GTGGTGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCG < 41bp 1 0.47609194344022 1 0.745021760463715 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052450 chr11:67052434 nonsynonymous SNV 0.983 3 5 hm5C_associated_SNPs_41065 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 21bp
chr11 67052434 67052434 1 + C T UCEC 67052451 + 67052431 67052471 41 TGGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGG TGGTGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGG < 41bp 1 0.697894721606864 1 0.803953945636749 experiment 0.604210556786272 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052451 chr11:67052434 nonsynonymous SNV 0.983 3 4 hm5C_associated_SNPs_41066 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 21bp
chr11 67052434 67052434 1 + C T UCEC 67052452 + 67052432 67052472 41 GGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGGG GGTGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGGG < 41bp 1 0.52414211347276 1 0.705273568630219 experiment 0.95171577305448 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052452 chr11:67052434 nonsynonymous SNV 0.983 3 3 hm5C_associated_SNPs_41067 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 21bp
chr11 67052434 67052434 1 + C T UCEC 67052453 + 67052433 67052473 41 GCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGGGG GTGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGGGG < 41bp 1 0.745068371721973 1 0.631834149360657 experiment 0.509863256556055 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052453 chr11:67052434 nonsynonymous SNV 0.983 3 2 hm5C_associated_SNPs_41068 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 21bp
chr6 145157474 145157474 1 + C T UCEC 145157491 + 145157471 145157511 41 CAGCACCTCCGAAGGGGGCTCCCTGTCGGTTCACCGCCAGA CAGTACCTCCGAAGGGGGCTCCCTGTCGGTTCACCGCCAGA < 41bp 1 0.0574186853256481 1 0.259549677371979 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:145157491 chr6:145157474 nonsynonymous SNV 0.995 2 4 hm5C_associated_SNPs_41069 0 0 1 0 1 UTRN chr6:145157437 3'AG 145157437 Downstream 38bp
chr7 99627517 99627517 1 + A G UCEC 99627498 + 99627478 99627518 41 CCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCCCTCAT CCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCCCTCGT < 41bp 1 0.516162144838957 1 0.140241891145706 experiment 0.967675710322087 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627498 chr7:99627517 nonsynonymous SNV 0.524 0 40 hm5C_associated_SNPs_41072 0 0 1 0 2 ZKSCAN1 chr7:99627484 3'AG 99627484 Downstream 34bp
chr7 99627517 99627517 1 + A G UCEC 99627498 + 99627478 99627518 41 CCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCCCTCAT CCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCCCTCGT < 41bp 1 0.516162144838957 1 0.140241891145706 experiment 0.967675710322087 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627498 chr7:99627517 nonsynonymous SNV 0.524 0 40 hm5C_associated_SNPs_41072 0 0 1 0 2 ZKSCAN1 chr7:99627575 5'GT 99627575 Upstream 59bp
chr12 1890204 1890204 1 + A G UCEC 1890217 + 1890197 1890237 41 CAGTGGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAG CAGTGGGGCATGTTTGCCACCCCTCAGTATCGGGGAGTAAG < 41bp 1 0.0557974416581432 1 0.0311235189437866 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1890217 chr12:1890204 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_41073 0 0 1 0 1 ADIPOR2 chr12:1890242 5'GT 1890242 Upstream 39bp
chr12 1890204 1890204 1 + A G UCEC 1890218 + 1890198 1890238 41 AGTGGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAGA AGTGGGGCATGTTTGCCACCCCTCAGTATCGGGGAGTAAGA < 41bp 1 0.285637292452992 1 0.05394446849823 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1890218 chr12:1890204 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_41074 0 0 1 0 1 ADIPOR2 chr12:1890242 5'GT 1890242 Upstream 39bp
chr12 1890204 1890204 1 + A G UCEC 1890219 + 1890199 1890239 41 GTGGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAGAG GTGGGGCATGTTTGCCACCCCTCAGTATCGGGGAGTAAGAG < 41bp 1 0.542094522998959 1 0.425941437482834 experiment 0.915810954002082 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1890219 chr12:1890204 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_41075 0 0 1 0 1 ADIPOR2 chr12:1890242 5'GT 1890242 Upstream 39bp
chr12 1890204 1890204 1 + A G UCEC 1890221 + 1890201 1890241 41 GGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAGAGCA GGGGCATGTTTGCCACCCCTCAGTATCGGGGAGTAAGAGCA < 41bp 1 0.650314924560179 1 0.836331725120544 experiment 0.699370150879642 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1890221 chr12:1890204 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_41076 0 0 1 0 1 ADIPOR2 chr12:1890242 5'GT 1890242 Upstream 39bp
chr15 91456109 91456109 1 + C A UCEC 91456118 + 91456098 91456138 41 TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCCCGTGCTGCG TTTCTCTAGCCATACGTCCCCAAGGAGCCCCCCGTGCTGCG < 41bp 1 0.612621207835874 1 0.866792440414429 experiment 0.774757584328252 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91456118 chr15:91456109 synonymous SNV . 0 12 hm5C_associated_SNPs_41078 0 0 1 0 1 MAN2A2 chr15:91456107 3'AG 91456107 Downstream 3bp
chr17 29855735 29855735 1 + G A UCEC 29855723 + 29855703 29855743 41 AGGCAGGGGCCGCAGTGCCTCCTCTGGCCTAGGCGAGTTCA AGGCAGGGGCCGCAGTGCCTCCTCTGGCCTAGACGAGTTCA < 41bp 1 0.116728930779565 1 0.207984775304794 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAB11FIP4 ENSG00000131242 CDS Human protein_coding chr17:29855723 chr17:29855735 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_41079 0 0 1 0 2 RAB11FIP4 chr17:29855638 3'AG 29855638 Downstream 98bp
chr17 29855735 29855735 1 + G A UCEC 29855723 + 29855703 29855743 41 AGGCAGGGGCCGCAGTGCCTCCTCTGGCCTAGGCGAGTTCA AGGCAGGGGCCGCAGTGCCTCCTCTGGCCTAGACGAGTTCA < 41bp 1 0.116728930779565 1 0.207984775304794 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAB11FIP4 ENSG00000131242 CDS Human protein_coding chr17:29855723 chr17:29855735 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_41079 0 0 1 0 2 RAB11FIP4 chr17:29855796 5'GT 29855796 Upstream 62bp
chr16 67671689 67671689 1 + G T UCEC 67671677 + 67671657 67671697 41 AAAAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAG AAAAAGAGCCAGATGCTGAGCCCGCAGAGGGATAGGAAGAG < 41bp 1 0.245508302627982 1 0.0788452625274658 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671677 chr16:67671689 stopgain 0.923 1 33 hm5C_associated_SNPs_41081 0 0 1 0 2 CTCF chr16:67671591 3'AG 67671591 Downstream 99bp
chr16 67671689 67671689 1 + G T UCEC 67671677 + 67671657 67671697 41 AAAAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAG AAAAAGAGCCAGATGCTGAGCCCGCAGAGGGATAGGAAGAG < 41bp 1 0.245508302627982 1 0.0788452625274658 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671677 chr16:67671689 stopgain 0.923 1 33 hm5C_associated_SNPs_41081 0 0 1 0 2 CTCF chr16:67671597 3'AG 67671597 Downstream 93bp
chr16 67671689 67671689 1 + G T UCEC 67671678 + 67671658 67671698 41 AAAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGG AAAAGAGCCAGATGCTGAGCCCGCAGAGGGATAGGAAGAGG < 41bp 1 0.605625795250408 1 0.403919249773026 experiment 0.788748409499185 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671678 chr16:67671689 stopgain 0.923 1 32 hm5C_associated_SNPs_41082 0 0 1 0 2 CTCF chr16:67671591 3'AG 67671591 Downstream 99bp
chr16 67671689 67671689 1 + G T UCEC 67671678 + 67671658 67671698 41 AAAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGG AAAAGAGCCAGATGCTGAGCCCGCAGAGGGATAGGAAGAGG < 41bp 1 0.605625795250408 1 0.403919249773026 experiment 0.788748409499185 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671678 chr16:67671689 stopgain 0.923 1 32 hm5C_associated_SNPs_41082 0 0 1 0 2 CTCF chr16:67671597 3'AG 67671597 Downstream 93bp
chr16 67671689 67671689 1 + G T UCEC 67671679 + 67671659 67671699 41 AAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGGA AAAGAGCCAGATGCTGAGCCCGCAGAGGGATAGGAAGAGGA < 41bp 1 0.441987428515821 1 0.205687314271927 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671679 chr16:67671689 stopgain 0.923 1 31 hm5C_associated_SNPs_41083 0 0 1 0 2 CTCF chr16:67671591 3'AG 67671591 Downstream 99bp
chr16 67671689 67671689 1 + G T UCEC 67671679 + 67671659 67671699 41 AAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGGA AAAGAGCCAGATGCTGAGCCCGCAGAGGGATAGGAAGAGGA < 41bp 1 0.441987428515821 1 0.205687314271927 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671679 chr16:67671689 stopgain 0.923 1 31 hm5C_associated_SNPs_41083 0 0 1 0 2 CTCF chr16:67671597 3'AG 67671597 Downstream 93bp
chr16 67671689 67671689 1 + G T UCEC 67671681 + 67671661 67671701 41 AGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGGAGG AGAGCCAGATGCTGAGCCCGCAGAGGGATAGGAAGAGGAGG < 41bp 1 0.646013379256207 1 0.571854829788208 experiment 0.707973241487585 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671681 chr16:67671689 stopgain 0.923 1 29 hm5C_associated_SNPs_41084 0 0 1 0 2 CTCF chr16:67671591 3'AG 67671591 Downstream 99bp
chr16 67671689 67671689 1 + G T UCEC 67671681 + 67671661 67671701 41 AGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGGAGG AGAGCCAGATGCTGAGCCCGCAGAGGGATAGGAAGAGGAGG < 41bp 1 0.646013379256207 1 0.571854829788208 experiment 0.707973241487585 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671681 chr16:67671689 stopgain 0.923 1 29 hm5C_associated_SNPs_41084 0 0 1 0 2 CTCF chr16:67671597 3'AG 67671597 Downstream 93bp
chr3 33855118 33855118 1 + T C UCEC 33855117 + 33855097 33855137 41 TTTTTGGAGGCTCTGTAAAACTGGGTATGTAATTTTTAATA TTTTTGGAGGCTCTGTAAAACCGGGTATGTAATTTTTAATA < 41bp 1 0.661143254090448 1 0.408660918474197 experiment 0.677713491819103 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33855117 chr3:33855118 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_41085 0 0 1 0 2 PDCD6IP chr3:33855051 3'AG 33855051 Downstream 68bp
chr3 33855118 33855118 1 + T C UCEC 33855117 + 33855097 33855137 41 TTTTTGGAGGCTCTGTAAAACTGGGTATGTAATTTTTAATA TTTTTGGAGGCTCTGTAAAACCGGGTATGTAATTTTTAATA < 41bp 1 0.661143254090448 1 0.408660918474197 experiment 0.677713491819103 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33855117 chr3:33855118 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_41085 0 0 1 0 2 PDCD6IP chr3:33855120 5'GT 33855120 Upstream 3bp
chr1 110465791 110465791 1 + T C UCEC 110465798 + 110465778 110465818 41 GTTCTTTCAGATGTGGTGACCAAGCCTGATTGCAACTGCCT GTTCTTTCAGATGCGGTGACCAAGCCTGATTGCAACTGCCT < 41bp 1 0.235483426031076 1 0.193927407264709 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110465798 chr1:110465791 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_41086 0 0 0 0 1 CSF1 chr1:110465788 3'AG 110465788 Downstream 4bp
chr13 114203818 114203818 1 + T C UCEC 114203825 + 114203805 114203845 41 TGCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCA TGCAATCACGAGGCGTGTGCCCAGACCGGAGAGACGGTCCA < 41bp 1 0.693878213502892 1 0.143277257680893 experiment 0.612243572994216 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114203825 chr13:114203818 nonsynonymous SNV 0.089 1 14 hm5C_associated_SNPs_41088 0 0 1 0 1 TMCO3 chr13:114203740 3'AG 114203740 Downstream 79bp
chr13 114203818 114203818 1 + T C UCEC 114203826 + 114203806 114203846 41 GCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCAG GCAATCACGAGGCGTGTGCCCAGACCGGAGAGACGGTCCAG < 41bp 1 0.638928997919891 1 0.290119409561157 experiment 0.722142004160217 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114203826 chr13:114203818 nonsynonymous SNV 0.089 1 13 hm5C_associated_SNPs_41089 0 0 1 0 1 TMCO3 chr13:114203740 3'AG 114203740 Downstream 79bp
chr2 235943705 235943705 1 + A G UCEC 235943692 + 235943672 235943712 41 CCAACTCCAATGGCCTCCCTCGCTGCAAGTCAGAGGGGACC CCAACTCCAATGGCCTCCCTCGCTGCAAGTCAGGGGGGACC < 41bp 1 0.263451434206765 1 0.259331881999969 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235943692 chr2:235943705 nonsynonymous SNV 0.998 4 34 hm5C_associated_SNPs_41090 0 0 1 0 1 SH3BP4 chr2:235943764 5'GT 235943764 Upstream 60bp
chr20 52835655 52835655 1 + G A UCEC 52835659 + 52835639 52835679 41 TTGTATGCAAAATTCGGGAGCAACATAAACCTTGAAGCTGA TTGTATGCAAAATTCGAGAGCAACATAAACCTTGAAGCTGA < 41bp 1 0.703627827600271 1 0.103032261133194 experiment 0.592744344799458 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PFDN4 ENSG00000101132 CDS Human protein_coding chr20:52835659 chr20:52835655 nonsynonymous SNV 0.982 4 17 hm5C_associated_SNPs_41091 0 0 1 0 1 PFDN4 chr20:52835558 3'AG 52835558 Downstream 98bp
chr3 126751383 126751383 1 + A G UCEC 126751389 + 126751369 126751409 41 CTGGGCAAGGACTCACCCTCCAACAAGCTGCTCTACGCCAA CTGGGCAAGGACTCGCCCTCCAACAAGCTGCTCTACGCCAA < 41bp 1 0.459762395078453 1 0.578338205814362 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126751389 chr3:126751383 synonymous SNV . 0 15 hm5C_associated_SNPs_41092 0 0 1 0 1 PLXNA1 chr3:126751442 5'GT 126751442 Upstream 60bp
chr12 132546867 132546867 1 + A G UCEC 132546853 + 132546833 132546873 41 CCCCGGCACGGTCTTTGGTGCCCCAAGTGTCCCAAGGTAAA CCCCGGCACGGTCTTTGGTGCCCCAAGTGTCCCAGGGTAAA < 41bp 1 0.140998748824473 1 0.0674214959144592 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546853 chr12:132546867 synonymous SNV . 0 35 hm5C_associated_SNPs_41093 0 0 1 0 1 EP400 chr12:132546868 5'GT 132546868 Upstream 2bp
chr7 150772765 150772765 1 + T C UCEC 150772775 + 150772755 150772795 41 TTCCTGTACATGGGAGTCACCTCCCTTAACGGGATCCAGTT TTCCTGTACACGGGAGTCACCTCCCTTAACGGGATCCAGTT < 41bp 1 0.311456069405473 1 0.371352165937424 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150772775 chr7:150772765 nonsynonymous SNV 1.000 5 11 hm5C_associated_SNPs_41096 0 0 1 0 2 SLC4A2 chr7:150772693 3'AG 150772693 Downstream 73bp
chr7 150772765 150772765 1 + T C UCEC 150772775 + 150772755 150772795 41 TTCCTGTACATGGGAGTCACCTCCCTTAACGGGATCCAGTT TTCCTGTACACGGGAGTCACCTCCCTTAACGGGATCCAGTT < 41bp 1 0.311456069405473 1 0.371352165937424 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150772775 chr7:150772765 nonsynonymous SNV 1.000 5 11 hm5C_associated_SNPs_41096 0 0 1 0 2 SLC4A2 chr7:150772862 5'GT 150772862 Upstream 98bp
chr19 38871592 38871592 1 + C A UCEC 38871607 + 38871587 38871627 41 ATCCCCGCCGAGAGCTACACCTTCTTCATTGACATCCTGCT ATCCCAGCCGAGAGCTACACCTTCTTCATTGACATCCTGCT < 41bp 1 0.148601134528132 1 0.0511108636856079 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMD8 ENSG00000099341 CDS Human protein_coding chr19:38871607 chr19:38871592 synonymous SNV . 0 6 hm5C_associated_SNPs_41098 0 0 1 0 2 PSMD8 chr19:38871539 3'AG 38871539 Downstream 54bp
chr19 38871592 38871592 1 + C A UCEC 38871607 + 38871587 38871627 41 ATCCCCGCCGAGAGCTACACCTTCTTCATTGACATCCTGCT ATCCCAGCCGAGAGCTACACCTTCTTCATTGACATCCTGCT < 41bp 1 0.148601134528132 1 0.0511108636856079 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMD8 ENSG00000099341 CDS Human protein_coding chr19:38871607 chr19:38871592 synonymous SNV . 0 6 hm5C_associated_SNPs_41098 0 0 1 0 2 PSMD8 chr19:38871639 5'GT 38871639 Upstream 48bp
chr16 30096343 30096343 1 + G A UCEC 30096347 + 30096327 30096367 41 CCCCAAGAGACACGGGGCATCCCCTCCAAGAAGCCCGTGGC CCCCAAGAGACACGGGACATCCCCTCCAAGAAGCCCGTGGC < 41bp 1 0.350585621879686 1 0.210889339447021 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP4C ENSG00000149923 CDS Human protein_coding chr16:30096347 chr16:30096343 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_41099 0 0 1 0 1 PPP4C chr16:30096254 3'AG 30096254 Downstream 90bp
chr9 107515202 107515202 1 + G A UCEC 107515213 + 107515193 107515233 41 TTGCTCATCGAACTGAAGTTCGGAAAGCCTTGGCCAAAGAT TTGCTCATCAAACTGAAGTTCGGAAAGCCTTGGCCAAAGAT < 41bp 1 0.696842208452964 1 0.853995323181152 experiment 0.606315583094072 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NIPSNAP3A ENSG00000136783 CDS Human protein_coding chr9:107515213 chr9:107515202 nonsynonymous SNV 0.929 3 10 hm5C_associated_SNPs_41100 0 0 1 0 1 NIPSNAP3A chr9:107515187 3'AG 107515187 Downstream 16bp
chr17 64785035 64785035 1 + C T UCEC 64785043 + 64785023 64785063 41 CATGCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAA CATGCCTTCTTCTGGAGGATCGACTGGGAAAAACTGGAGAA < 41bp 1 0.304012142382962 1 0.347363293170929 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785043 chr17:64785035 nonsynonymous SNV 0.998 4 13 hm5C_associated_SNPs_41102 0 0 1 0 2 PRKCA chr17:64784957 3'AG 64784957 Downstream 79bp
chr17 64785035 64785035 1 + C T UCEC 64785043 + 64785023 64785063 41 CATGCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAA CATGCCTTCTTCTGGAGGATCGACTGGGAAAAACTGGAGAA < 41bp 1 0.304012142382962 1 0.347363293170929 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785043 chr17:64785035 nonsynonymous SNV 0.998 4 13 hm5C_associated_SNPs_41102 0 0 1 0 2 PRKCA chr17:64785097 5'GT 64785097 Upstream 63bp
chr17 64785035 64785035 1 + C T UCEC 64785046 + 64785026 64785066 41 GCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAACAG GCCTTCTTCTGGAGGATCGACTGGGAAAAACTGGAGAACAG < 41bp 1 0.593801080058008 1 0.461277037858963 experiment 0.812397839883983 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785046 chr17:64785035 nonsynonymous SNV 0.998 4 10 hm5C_associated_SNPs_41103 0 0 1 0 2 PRKCA chr17:64784957 3'AG 64784957 Downstream 79bp
chr17 64785035 64785035 1 + C T UCEC 64785046 + 64785026 64785066 41 GCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAACAG GCCTTCTTCTGGAGGATCGACTGGGAAAAACTGGAGAACAG < 41bp 1 0.593801080058008 1 0.461277037858963 experiment 0.812397839883983 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785046 chr17:64785035 nonsynonymous SNV 0.998 4 10 hm5C_associated_SNPs_41103 0 0 1 0 2 PRKCA chr17:64785097 5'GT 64785097 Upstream 63bp
chr3 124053153 124053153 1 + G A UCEC 124053164 + 124053144 124053184 41 GCTGCAGCGGCCCCTGAGCCCTGGGAACTCCGAATCCCTCA GCTGCAGCGACCCCTGAGCCCTGGGAACTCCGAATCCCTCA < 41bp 1 0.607681057282646 1 0.764022946357727 experiment 0.784637885434707 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KALRN ENSG00000160145 CDS Human protein_coding chr3:124053164 chr3:124053153 synonymous SNV . 0 10 hm5C_associated_SNPs_41104 0 0 0 0 1 KALRN chr3:124053112 3'AG 124053112 Downstream 42bp
chr3 160122152 160122152 1 + T G UCEC 160122141 + 160122121 160122161 41 GGATGATTATGAAGTCATTCCTAACAGTAATTTCTATGTAT GGATGATTATGAAGTCATTCCTAACAGTAATGTCTATGTAT < 41bp 1 0.10881399030218 1 0.0322751998901367 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160122141 chr3:160122152 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_41105 0 0 1 3 1 SMC4 chr3:160122116 3'AG 160122116 Downstream 37bp
chr3 160122152 160122152 1 + T G UCEC 160122171 + 160122151 160122191 41 TTTCTATGTATCCAGAACGGCCTGCAGAGATAATACTTCTG TGTCTATGTATCCAGAACGGCCTGCAGAGATAATACTTCTG < 41bp 1 0.0348665170782254 1 0.0605757534503937 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160122171 chr3:160122152 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_41106 0 0 1 3 1 SMC4 chr3:160122116 3'AG 160122116 Downstream 37bp
chr7 66660265 66660265 1 + G A UCEC 66660256 + 66660236 66660276 41 TTGTCCACGAGTTGGTGGATCTGATCCCCGAATATGAAATT TTGTCCACGAGTTGGTGGATCTGATCCCCAAATATGAAATT < 41bp 1 0.268641639358072 1 0.0681069493293762 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66660256 chr7:66660265 nonsynonymous SNV 0.020 0 30 hm5C_associated_SNPs_41107 0 0 0 0 1 TYW1 chr7:66660324 5'GT 66660324 Upstream 60bp
chr3 58112453 58112453 1 + G T UCEC 58112439 + 58112419 58112459 41 TGCTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTA TGCTGAGTACATTCCTTTCGCACCGGGGGATTACTATGTTA < 41bp 1 0.469296722049702 1 0.106759041547775 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112439 chr3:58112453 nonsynonymous SNV 0.974 5 35 hm5C_associated_SNPs_41108 0 0 1 0 1 FLNB chr3:58112489 5'GT 58112489 Upstream 37bp
chr3 58112453 58112453 1 + G T UCEC 58112441 + 58112421 58112461 41 CTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAAT CTGAGTACATTCCTTTCGCACCGGGGGATTACTATGTTAAT < 41bp 1 0.207750743172245 1 0.27865332365036 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112441 chr3:58112453 nonsynonymous SNV 0.974 5 33 hm5C_associated_SNPs_41109 0 0 1 0 1 FLNB chr3:58112489 5'GT 58112489 Upstream 37bp
chr3 58112453 58112453 1 + G T UCEC 58112442 + 58112422 58112462 41 TGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAATA TGAGTACATTCCTTTCGCACCGGGGGATTACTATGTTAATA < 41bp 1 0.471808073379017 1 0.857242465019226 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112442 chr3:58112453 nonsynonymous SNV 0.974 5 32 hm5C_associated_SNPs_41110 0 0 1 0 1 FLNB chr3:58112489 5'GT 58112489 Upstream 37bp
chr11 43411205 43411205 1 + C T UCEC 43411217 + 43411197 43411237 41 AACAGAAACAATTAGTTGCTCAAAAAATTCACATAGAAGAG AACAGAAATAATTAGTTGCTCAAAAAATTCACATAGAAGAG < 41bp 1 0.434606210722176 1 0.374378025531769 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTC17 ENSG00000052841 CDS Human protein_coding chr11:43411217 chr11:43411205 stopgain 0.999 1 9 hm5C_associated_SNPs_41111 0 0 1 0 1 TTC17 chr11:43411202 3'AG 43411202 Downstream 4bp
chrX 128695229 128695229 1 + G T UCEC 128695224 + 128695204 128695244 41 TGTGAAGGAACAAGAATGGTCCATGGCTGTAGAGAGAGGTT TGTGAAGGAACAAGAATGGTCCATGTCTGTAGAGAGAGGTT < 41bp 1 0.0678753847701451 1 0.0376727879047394 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128695224 chrX:128695229 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_41112 0 0 1 0 2 OCRL chrX:128695156 3'AG 128695156 Downstream 74bp
chrX 128695229 128695229 1 + G T UCEC 128695224 + 128695204 128695244 41 TGTGAAGGAACAAGAATGGTCCATGGCTGTAGAGAGAGGTT TGTGAAGGAACAAGAATGGTCCATGTCTGTAGAGAGAGGTT < 41bp 1 0.0678753847701451 1 0.0376727879047394 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128695224 chrX:128695229 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_41112 0 0 1 0 2 OCRL chrX:128695270 5'GT 128695270 Upstream 42bp
chr12 57627366 57627366 1 + G T UCEC 57627364 + 57627344 57627384 41 AGGCCTGCACCCCCATGTTCCGGGAGTACTCCCTGCAGGTT AGGCCTGCACCCCCATGTTCCGTGAGTACTCCCTGCAGGTT < 41bp 1 0.73389515755915 1 0.088031679391861 experiment 0.532209684881701 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57627364 chr12:57627366 synonymous SNV . 0 23 hm5C_associated_SNPs_41113 0 0 1 0 2 SHMT2 chr12:57627346 3'AG 57627346 Downstream 21bp
chr12 57627366 57627366 1 + G T UCEC 57627364 + 57627344 57627384 41 AGGCCTGCACCCCCATGTTCCGGGAGTACTCCCTGCAGGTT AGGCCTGCACCCCCATGTTCCGTGAGTACTCCCTGCAGGTT < 41bp 1 0.73389515755915 1 0.088031679391861 experiment 0.532209684881701 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57627364 chr12:57627366 synonymous SNV . 0 23 hm5C_associated_SNPs_41113 0 0 1 0 2 SHMT2 chr12:57627445 5'GT 57627445 Upstream 80bp
chr18 56402460 56402460 1 + T C UCEC 56402451 + 56402431 56402471 41 AAGGTGTCAAGGAGCAGAAGCTTTTGAAATCCAGCATTCTG AAGGTGTCAAGGAGCAGAAGCTTTTGAAACCCAGCATTCTG < 41bp 1 0.0462053659392979 1 0.0430289804935455 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MALT1 ENSG00000172175 CDS Human protein_coding chr18:56402451 chr18:56402460 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_41114 0 0 1 0 1 MALT1 chr18:56402434 3'AG 56402434 Downstream 27bp
chr18 61648964 61648964 1 + G T UCEC 61648969 + 61648949 61648989 41 TTGCAGGACTTTAAAGAATACTGTCAGAAGTTCTATCAGGC TTGCAGGACTTTAAATAATACTGTCAGAAGTTCTATCAGGC < 41bp 1 0.176241183689843 1 0.124266028404236 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61648969 chr18:61648964 stopgain 0.156 0 16 hm5C_associated_SNPs_41115 0 0 0 0 1 SERPINB8 chr18:61648955 3'AG 61648955 Downstream 10bp
chr2 228148555 228148555 1 + G A UCEC 228148543 + 228148523 228148563 41 CATTGGCCCTCCAGGGCCCCCTGGGAACCCAGGCACACCAG CATTGGCCCTCCAGGGCCCCCTGGGAACCCAGACACACCAG < 41bp 1 0.643747170443805 1 0.669244289398193 experiment 0.71250565911239 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228148543 chr2:228148555 nonsynonymous SNV 0.118 5 33 hm5C_associated_SNPs_41116 0 0 0 0 2 COL4A3 chr2:228148483 3'AG 228148483 Downstream 73bp
chr2 228148555 228148555 1 + G A UCEC 228148543 + 228148523 228148563 41 CATTGGCCCTCCAGGGCCCCCTGGGAACCCAGGCACACCAG CATTGGCCCTCCAGGGCCCCCTGGGAACCCAGACACACCAG < 41bp 1 0.643747170443805 1 0.669244289398193 experiment 0.71250565911239 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228148543 chr2:228148555 nonsynonymous SNV 0.118 5 33 hm5C_associated_SNPs_41116 0 0 0 0 2 COL4A3 chr2:228148572 5'GT 228148572 Upstream 18bp
chr6 125550327 125550327 1 + A G UCEC 125550344 + 125550324 125550364 41 GAGATAAAACAAAAACTCGGCATGAACCTGATGAATGAATT GAGGTAAAACAAAAACTCGGCATGAACCTGATGAATGAATT < 41bp 1 0.251642778106928 1 0.0841017663478851 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPD52L1 ENSG00000111907 CDS Human protein_coding chr6:125550344 chr6:125550327 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_41117 0 0 1 0 2 TPD52L1 chr6:125550264 3'AG 125550264 Downstream 64bp
chr6 125550327 125550327 1 + A G UCEC 125550344 + 125550324 125550364 41 GAGATAAAACAAAAACTCGGCATGAACCTGATGAATGAATT GAGGTAAAACAAAAACTCGGCATGAACCTGATGAATGAATT < 41bp 1 0.251642778106928 1 0.0841017663478851 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPD52L1 ENSG00000111907 CDS Human protein_coding chr6:125550344 chr6:125550327 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_41117 0 0 1 0 2 TPD52L1 chr6:125550412 5'GT 125550412 Upstream 86bp
chr1 164789347 164789347 1 + T G UCEC 164789352 + 164789332 164789372 41 TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA TCAAACTCTGGAGATGTGTTCATGAGCGTGCAGTCACTCAA < 41bp 1 0.597755739826246 1 0.108640342950821 experiment 0.804488520347507 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789352 chr1:164789347 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_41119 0 0 0 0 2 PBX1 chr1:164789309 3'AG 164789309 Downstream 39bp
chr1 164789347 164789347 1 + T G UCEC 164789352 + 164789332 164789372 41 TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA TCAAACTCTGGAGATGTGTTCATGAGCGTGCAGTCACTCAA < 41bp 1 0.597755739826246 1 0.108640342950821 experiment 0.804488520347507 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789352 chr1:164789347 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_41119 0 0 0 0 2 PBX1 chr1:164789421 5'GT 164789421 Upstream 75bp
chr17 42152816 42152816 1 + C A UCEC 42152812 + 42152792 42152832 41 TCTTTACACTGGGCCTGGATCTTTCTTGGTAAGTCTCGCTT TCTTTACACTGGGCCTGGATCTTTATTGGTAAGTCTCGCTT < 41bp 1 0.448636944410884 1 0.297569334506989 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control G6PC3 ENSG00000141349 CDS Human protein_coding chr17:42152812 chr17:42152816 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_41120 0 0 1 0 1 G6PC3 chr17:42152819 5'GT 42152819 Upstream 4bp
chr7 91714844 91714844 1 + G A UCEC 91714852 + 91714832 91714872 41 TGAAGGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATA TGAAGGCATGCAAGTGCTTTCTCTCACTGAGTCTCCCTATA < 41bp 1 0.192242608643985 1 0.024238795042038 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714852 chr7:91714844 synonymous SNV . 0 13 hm5C_associated_SNPs_41122 0 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 36bp
chr7 91714844 91714844 1 + G A UCEC 91714856 + 91714836 91714876 41 GGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATAGTGA GGCATGCAAGTGCTTTCTCTCACTGAGTCTCCCTATAGTGA < 41bp 1 0.326442612323056 1 0.183080196380615 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714856 chr7:91714844 synonymous SNV . 0 9 hm5C_associated_SNPs_41123 0 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 36bp
chr7 91714844 91714844 1 + G A UCEC 91714864 + 91714844 91714884 41 GGTGCTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGG AGTGCTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGG < 41bp 1 0.195379110075427 1 0.268511444330215 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714864 chr7:91714844 synonymous SNV . 0 1 hm5C_associated_SNPs_41124 0 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 36bp
chr22 46681142 46681142 1 + A G UCEC 46681140 + 46681120 46681160 41 AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCGCTGAC AGAACTTTATTCTTCCAGGGCGGATATGAGGCCGCGCTGAC < 41bp 1 0.181528581822201 1 0.522590219974518 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC38 ENSG00000075234 CDS Human protein_coding chr22:46681140 chr22:46681142 nonsynonymous SNV 0.041 1 23 hm5C_associated_SNPs_41125 0 0 1 0 2 TTC38 chr22:46681138 3'AG 46681138 Downstream 5bp
chr22 46681142 46681142 1 + A G UCEC 46681140 + 46681120 46681160 41 AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCGCTGAC AGAACTTTATTCTTCCAGGGCGGATATGAGGCCGCGCTGAC < 41bp 1 0.181528581822201 1 0.522590219974518 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC38 ENSG00000075234 CDS Human protein_coding chr22:46681140 chr22:46681142 nonsynonymous SNV 0.041 1 23 hm5C_associated_SNPs_41125 0 0 1 0 2 TTC38 chr22:46681176 5'GT 46681176 Upstream 35bp
chr22 42042985 42042985 1 + A C UCEC 42042976 + 42042956 42042996 41 TCCAGAAGGCTCTCAAGCCTCCTCCAATAAAGCTCTATCGG TCCAGAAGGCTCTCAAGCCTCCTCCAATACAGCTCTATCGG < 41bp 1 0.102044446421806 1 0.182749718427658 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42042976 chr22:42042985 nonsynonymous SNV 0.350 1 30 hm5C_associated_SNPs_41126 0 0 1 0 1 XRCC6 chr22:42042900 3'AG 42042900 Downstream 86bp
chr1 10328295 10328295 1 + A G UCEC 10328306 + 10328286 10328326 41 AAACACGATAATGAGACCAACCTTTCCACTGAGAAGGTAGG AAACACGATGATGAGACCAACCTTTCCACTGAGAAGGTAGG < 41bp 1 0.00340755759332981 1 0.0318421423435211 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10328306 chr1:10328295 nonsynonymous SNV 0.886 0 10 hm5C_associated_SNPs_41127 0 0 1 0 2 KIF1B chr1:10328210 3'AG 10328210 Downstream 86bp
chr1 10328295 10328295 1 + A G UCEC 10328306 + 10328286 10328326 41 AAACACGATAATGAGACCAACCTTTCCACTGAGAAGGTAGG AAACACGATGATGAGACCAACCTTTCCACTGAGAAGGTAGG < 41bp 1 0.00340755759332981 1 0.0318421423435211 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10328306 chr1:10328295 nonsynonymous SNV 0.886 0 10 hm5C_associated_SNPs_41127 0 0 1 0 2 KIF1B chr1:10328321 5'GT 10328321 Upstream 27bp
chrX 70779268 70779268 1 + A G UCEC 70779251 + 70779231 70779271 41 CTTATGCAGTCTATTCCAGGCATGCACAATCCTGATAAATT CTTATGCAGTCTATTCCAGGCATGCACAATCCTGATAGATT < 41bp 1 0.065906867175863 1 0.0531978607177734 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70779251 chrX:70779268 nonsynonymous SNV 0.999 1 38 hm5C_associated_SNPs_41128 0 0 1 0 1 OGT chrX:70779275 5'GT 70779275 Upstream 8bp
chr19 17424881 17424881 1 + G A UCEC 17424890 + 17424870 17424910 41 CAATTTTAGTCGATTTCACGCGGACTCCGTGTGCAAAGCCT CAATTTTAGTCAATTTCACGCGGACTCCGTGTGCAAAGCCT < 41bp 1 0.166790051677606 1 0.16892609000206 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDA1 ENSG00000130311 CDS Human protein_coding chr19:17424890 chr19:17424881 nonsynonymous SNV 0.885 1 12 hm5C_associated_SNPs_41129 0 0 1 0 2 DDA1 chr19:17424832 3'AG 17424832 Downstream 50bp
chr19 17424881 17424881 1 + G A UCEC 17424890 + 17424870 17424910 41 CAATTTTAGTCGATTTCACGCGGACTCCGTGTGCAAAGCCT CAATTTTAGTCAATTTCACGCGGACTCCGTGTGCAAAGCCT < 41bp 1 0.166790051677606 1 0.16892609000206 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDA1 ENSG00000130311 CDS Human protein_coding chr19:17424890 chr19:17424881 nonsynonymous SNV 0.885 1 12 hm5C_associated_SNPs_41129 0 0 1 0 2 DDA1 chr19:17424912 5'GT 17424912 Upstream 32bp
chr11 118369106 118369106 1 + C T UCEC 118369113 + 118369093 118369133 41 ATTCTGCCAAAAGCCAGGAGCCACCGTGGGTTGCTGTCTCA ATTCTGCCAAAAGTCAGGAGCCACCGTGGGTTGCTGTCTCA < 41bp 1 0.0211967557983011 1 0.163427501916885 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118369113 chr11:118369106 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_41130 0 0 1 0 1 KMT2A chr11:118369085 3'AG 118369085 Downstream 22bp
chr15 36989526 36989526 1 + C T UCEC 36989527 + 36989507 36989547 41 TAACTGAAACTTCCCAGTGCCATTGGTCATGAGCATGAGGT TAACTGAAACTTCCCAGTGTCATTGGTCATGAGCATGAGGT < 41bp 1 0.130316443389098 1 0.0339178740978241 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989527 chr15:36989526 nonsynonymous SNV 0.999 1 20 hm5C_associated_SNPs_41131 0 0 1 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 3bp
chr15 36989526 36989526 1 + C T UCEC 36989527 + 36989507 36989547 41 TAACTGAAACTTCCCAGTGCCATTGGTCATGAGCATGAGGT TAACTGAAACTTCCCAGTGTCATTGGTCATGAGCATGAGGT < 41bp 1 0.130316443389098 1 0.0339178740978241 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989527 chr15:36989526 nonsynonymous SNV 0.999 1 20 hm5C_associated_SNPs_41131 0 0 1 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 66bp
chr15 36989526 36989526 1 + C T UCEC 36989540 + 36989520 36989560 41 CCAGTGCCATTGGTCATGAGCATGAGGTCCTGCTGAGAGAC CCAGTGTCATTGGTCATGAGCATGAGGTCCTGCTGAGAGAC < 41bp 1 0.718207537664101 1 0.354310214519501 experiment 0.563584924671797 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989540 chr15:36989526 nonsynonymous SNV 0.999 1 7 hm5C_associated_SNPs_41132 0 0 1 0 2 C15orf41 chr15:36989524 3'AG 36989524 Downstream 3bp
chr15 36989526 36989526 1 + C T UCEC 36989540 + 36989520 36989560 41 CCAGTGCCATTGGTCATGAGCATGAGGTCCTGCTGAGAGAC CCAGTGTCATTGGTCATGAGCATGAGGTCCTGCTGAGAGAC < 41bp 1 0.718207537664101 1 0.354310214519501 experiment 0.563584924671797 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989540 chr15:36989526 nonsynonymous SNV 0.999 1 7 hm5C_associated_SNPs_41132 0 0 1 0 2 C15orf41 chr15:36989591 5'GT 36989591 Upstream 66bp
chr1 22336271 22336271 1 + T C UCEC 22336262 + 22336242 22336282 41 CTGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTG CTGGCAGGTCCACGGTGTGACCAGCTTTGCTTCTGCCTTTG < 41bp 1 0.343454923238248 1 0.0952849388122559 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336262 chr1:22336271 nonsynonymous SNV 0.514 1 30 hm5C_associated_SNPs_41133 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 80bp
chr1 22336271 22336271 1 + T C UCEC 22336263 + 22336243 22336283 41 TGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGG TGGCAGGTCCACGGTGTGACCAGCTTTGCTTCTGCCTTTGG < 41bp 1 0.64855045333844 1 0.181793004274368 experiment 0.70289909332312 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336263 chr1:22336271 nonsynonymous SNV 0.514 1 29 hm5C_associated_SNPs_41134 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 80bp
chr1 22336271 22336271 1 + T C UCEC 22336266 + 22336246 22336286 41 CAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTG CAGGTCCACGGTGTGACCAGCTTTGCTTCTGCCTTTGGCTG < 41bp 1 0.108921473395409 1 0.0587840974330902 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336266 chr1:22336271 nonsynonymous SNV 0.514 1 26 hm5C_associated_SNPs_41135 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 80bp
chr1 22336271 22336271 1 + T C UCEC 22336274 + 22336254 22336294 41 CGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCA CGGTGTGACCAGCTTTGCTTCTGCCTTTGGCTGCAACTTCA < 41bp 1 0.483272246766116 1 0.0849892795085907 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336274 chr1:22336271 nonsynonymous SNV 0.514 1 18 hm5C_associated_SNPs_41136 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 80bp
chr1 22336271 22336271 1 + T C UCEC 22336277 + 22336257 22336297 41 TGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCT TGTGACCAGCTTTGCTTCTGCCTTTGGCTGCAACTTCATCT < 41bp 1 0.0459764659756 1 0.0182113945484161 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336277 chr1:22336271 nonsynonymous SNV 0.514 1 15 hm5C_associated_SNPs_41137 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 80bp
chr1 22336271 22336271 1 + T C UCEC 22336278 + 22336258 22336298 41 GTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCTG GTGACCAGCTTTGCTTCTGCCTTTGGCTGCAACTTCATCTG < 41bp 1 0.332940874299569 1 0.0730965435504913 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336278 chr1:22336271 nonsynonymous SNV 0.514 1 14 hm5C_associated_SNPs_41138 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 80bp
chr1 22336271 22336271 1 + T C UCEC 22336284 + 22336264 22336304 41 AGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCC AGCTTTGCTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCC < 41bp 1 0.774478964207609 1 0.548873245716095 experiment 0.451042071584782 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336284 chr1:22336271 nonsynonymous SNV 0.514 1 8 hm5C_associated_SNPs_41139 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 80bp
chr1 22336271 22336271 1 + T C UCEC 22336287 + 22336267 22336307 41 TTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCAC TTTGCTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCAC < 41bp 1 0.239228855050774 1 0.0597550868988037 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336287 chr1:22336271 nonsynonymous SNV 0.514 1 5 hm5C_associated_SNPs_41140 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 80bp
chr1 22336271 22336271 1 + T C UCEC 22336290 + 22336270 22336310 41 GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT GCTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT < 41bp 1 0.599737418367576 1 0.756403744220734 experiment 0.800525163264847 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336290 chr1:22336271 nonsynonymous SNV 0.514 1 2 hm5C_associated_SNPs_41141 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 80bp
chr9 134064467 134064467 1 + T G UCEC 134064468 + 134064448 134064488 41 AATAAATTCCCTTAAGCCATCTGGGCCTACACCAGCATCCG AATAAATTCCCTTAAGCCAGCTGGGCCTACACCAGCATCCG < 41bp 1 0.437443530612693 1 0.482708841562271 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP214 ENSG00000126883 CDS Human protein_coding chr9:134064468 chr9:134064467 nonsynonymous SNV 0.921 0 20 hm5C_associated_SNPs_41142 0 0 1 3 2 NUP214 chr9:134064440 3'AG 134064440 Downstream 28bp
chr9 134064467 134064467 1 + T G UCEC 134064468 + 134064448 134064488 41 AATAAATTCCCTTAAGCCATCTGGGCCTACACCAGCATCCG AATAAATTCCCTTAAGCCAGCTGGGCCTACACCAGCATCCG < 41bp 1 0.437443530612693 1 0.482708841562271 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP214 ENSG00000126883 CDS Human protein_coding chr9:134064468 chr9:134064467 nonsynonymous SNV 0.921 0 20 hm5C_associated_SNPs_41142 0 0 1 3 2 NUP214 chr9:134064518 5'GT 134064518 Upstream 52bp
chrX 69519027 69519027 1 + G A UCEC 69519014 + 69518994 69519034 41 GCCCATCTCGTGAGAAAGCTCAAATAAATATACGAGAGGAT GCCCATCTCGTGAGAAAGCTCAAATAAATATACAAGAGGAT < 41bp 1 0.135135662770961 1 0.229261010885239 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69519014 chrX:69519027 nonsynonymous SNV 0.991 3 34 hm5C_associated_SNPs_41143 0 0 1 0 2 KIF4A chrX:69518963 3'AG 69518963 Downstream 65bp
chrX 69519027 69519027 1 + G A UCEC 69519014 + 69518994 69519034 41 GCCCATCTCGTGAGAAAGCTCAAATAAATATACGAGAGGAT GCCCATCTCGTGAGAAAGCTCAAATAAATATACAAGAGGAT < 41bp 1 0.135135662770961 1 0.229261010885239 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69519014 chrX:69519027 nonsynonymous SNV 0.991 3 34 hm5C_associated_SNPs_41143 0 0 1 0 2 KIF4A chrX:69519052 5'GT 69519052 Upstream 26bp
chr6 32134695 32134695 1 + G A UCEC 32134701 + 32134681 32134721 41 CCTCAGCCATCTGCGCCAAGCCTTGCCTGAACGGAGGCGTC CCTCAGCCATCTGCACCAAGCCTTGCCTGAACGGAGGCGTC < 41bp 1 0.0564479003160598 1 0.0348811149597168 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134701 chr6:32134695 nonsynonymous SNV 0.987 0 15 hm5C_associated_SNPs_41144 0 0 1 0 2 EGFL8 chr6:32134687 3'AG 32134687 Downstream 9bp
chr6 32134695 32134695 1 + G A UCEC 32134701 + 32134681 32134721 41 CCTCAGCCATCTGCGCCAAGCCTTGCCTGAACGGAGGCGTC CCTCAGCCATCTGCACCAAGCCTTGCCTGAACGGAGGCGTC < 41bp 1 0.0564479003160598 1 0.0348811149597168 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134701 chr6:32134695 nonsynonymous SNV 0.987 0 15 hm5C_associated_SNPs_41144 0 0 1 0 2 EGFL8 chr6:32134782 5'GT 32134782 Upstream 88bp
chr6 32134695 32134695 1 + G A UCEC 32134702 + 32134682 32134722 41 CTCAGCCATCTGCGCCAAGCCTTGCCTGAACGGAGGCGTCT CTCAGCCATCTGCACCAAGCCTTGCCTGAACGGAGGCGTCT < 41bp 1 0.172252662727201 1 0.035174697637558 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134702 chr6:32134695 nonsynonymous SNV 0.987 0 14 hm5C_associated_SNPs_41145 0 0 1 0 2 EGFL8 chr6:32134687 3'AG 32134687 Downstream 9bp
chr6 32134695 32134695 1 + G A UCEC 32134702 + 32134682 32134722 41 CTCAGCCATCTGCGCCAAGCCTTGCCTGAACGGAGGCGTCT CTCAGCCATCTGCACCAAGCCTTGCCTGAACGGAGGCGTCT < 41bp 1 0.172252662727201 1 0.035174697637558 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134702 chr6:32134695 nonsynonymous SNV 0.987 0 14 hm5C_associated_SNPs_41145 0 0 1 0 2 EGFL8 chr6:32134782 5'GT 32134782 Upstream 88bp
chr10 75548539 75548539 1 + G A UCEC 75548529 + 75548509 75548549 41 ACCCACCAGTGCCTGAGCAGCTACAGCTCCGAATTGCTTTT ACCCACCAGTGCCTGAGCAGCTACAGCTCCAAATTGCTTTT < 41bp 1 0.6224261957758 1 0.455345630645752 experiment 0.7551476084484 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75548529 chr10:75548539 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_41146 0 0 0 0 1 ZSWIM8 chr10:75548581 5'GT 75548581 Upstream 43bp
chr16 70164345 70164345 1 + G A UCEC 70164350 + 70164330 70164370 41 TCAGATCTATGACCGGACATCTGTTCTTCATGTAATGGTCA TCAGATCTATGACCGAACATCTGTTCTTCATGTAATGGTCA < 41bp 1 0.0676036356598305 1 0.0441977977752686 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70164350 chr16:70164345 synonymous SNV . 0 16 hm5C_associated_SNPs_41147 0 0 0 0 1 PDPR chr16:70164326 3'AG 70164326 Downstream 20bp
chr15 57554394 57554394 1 + G T UCEC 57554381 + 57554361 57554401 41 ACTTCAAGCACAGACCTGAACCATAAAACACAAGAAAATTA ACTTCAAGCACAGACCTGAACCATAAAACACAATAAAATTA < 41bp 1 0.162723718062768 1 0.184533983469009 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554381 chr15:57554394 stopgain 0.997 1 34 hm5C_associated_SNPs_41148 0 0 1 0 1 TCF12 chr15:57554406 5'GT 57554406 Upstream 13bp
chr15 57554394 57554394 1 + G T UCEC 57554382 + 57554362 57554402 41 CTTCAAGCACAGACCTGAACCATAAAACACAAGAAAATTAT CTTCAAGCACAGACCTGAACCATAAAACACAATAAAATTAT < 41bp 1 0.244079644847906 1 0.468483924865723 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554382 chr15:57554394 stopgain 0.997 1 33 hm5C_associated_SNPs_41149 0 0 1 0 1 TCF12 chr15:57554406 5'GT 57554406 Upstream 13bp
chr15 57554394 57554394 1 + G T UCEC 57554389 + 57554369 57554409 41 CACAGACCTGAACCATAAAACACAAGAAAATTATAGAGGTA CACAGACCTGAACCATAAAACACAATAAAATTATAGAGGTA < 41bp 1 0.51752856508092 1 0.474849432706833 experiment 0.964942869838159 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554389 chr15:57554394 stopgain 0.997 1 26 hm5C_associated_SNPs_41150 0 0 1 0 1 TCF12 chr15:57554406 5'GT 57554406 Upstream 13bp
chr19 7911525 7911525 1 + G A UCEC 7911531 + 7911511 7911551 41 AGAACCTCAGCCCCGATGAGCTGGAGCTGCTGGCCAAGCTC AGAACCTCAGCCCCAATGAGCTGGAGCTGCTGGCCAAGCTC < 41bp 1 0.762446111730795 1 0.744274020195007 experiment 0.475107776538411 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EVI5L ENSG00000142459 CDS Human protein_coding chr19:7911531 chr19:7911525 nonsynonymous SNV 0.993 2 15 hm5C_associated_SNPs_41152 0 0 0 0 1 EVI5L chr19:7911565 5'GT 7911565 Upstream 41bp
chr2 219676983 219676983 1 + A G UCEC 219676979 + 219676959 219676999 41 GGTACCAGCTGCGCCAGGCTCTGAACCAGCGGTTGCTGAAG GGTACCAGCTGCGCCAGGCTCTGAGCCAGCGGTTGCTGAAG < 41bp 1 0.697356205254994 1 0.673055052757263 experiment 0.605287589490012 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219676979 chr2:219676983 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_41153 0 0 1 0 1 CYP27A1 chr2:219676945 3'AG 219676945 Downstream 39bp
chr12 48528818 48528818 1 + G T UCEC 48528825 + 48528805 48528845 41 CAGAAGACATCAAGAATGTTCGTATGAATGAAGCCAGAGAG CAGAAGACATCAATAATGTTCGTATGAATGAAGCCAGAGAG < 41bp 1 0.217679776126148 1 0.182522237300873 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PFKM ENSG00000152556 CDS Human protein_coding chr12:48528825 chr12:48528818 nonsynonymous SNV 0.761 4 14 hm5C_associated_SNPs_41154 0 0 1 0 2 PFKM chr12:48528726 3'AG 48528726 Downstream 93bp
chr12 48528818 48528818 1 + G T UCEC 48528825 + 48528805 48528845 41 CAGAAGACATCAAGAATGTTCGTATGAATGAAGCCAGAGAG CAGAAGACATCAATAATGTTCGTATGAATGAAGCCAGAGAG < 41bp 1 0.217679776126148 1 0.182522237300873 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PFKM ENSG00000152556 CDS Human protein_coding chr12:48528825 chr12:48528818 nonsynonymous SNV 0.761 4 14 hm5C_associated_SNPs_41154 0 0 1 0 2 PFKM chr12:48528821 5'GT 48528821 Upstream 4bp
chr5 131976476 131976476 1 + C A UCEC 131976460 + 131976440 131976480 41 AGCCAACAACAAATCTTGACCGAGAAAACATTGAATCTCTT AGCCAACAACAAATCTTGACCGAGAAAACATTGAATATCTT < 41bp 1 0.605144985691502 1 0.495613366365433 experiment 0.789710028616996 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131976460 chr5:131976476 nonsynonymous SNV 0.977 3 37 hm5C_associated_SNPs_41155 0 0 1 0 1 RAD50 chr5:131976497 5'GT 131976497 Upstream 22bp
chr3 183853312 183853312 1 + C A UCEC 183853320 + 183853300 183853340 41 CTACAAGCAGTTCTGGTGGCCGATAGCTTCGATCGCCGCTT CTACAAGCAGTTATGGTGGCCGATAGCTTCGATCGCCGCTT < 41bp 1 0.603743743519939 1 0.525813460350037 experiment 0.792512512960122 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183853320 chr3:183853312 nonsynonymous SNV 0.998 5 13 hm5C_associated_SNPs_41156 0 0 0 0 1 EIF2B5 chr3:183853368 5'GT 183853368 Upstream 57bp
chr12 105519813 105519813 1 + A C UCEC 105519794 + 105519774 105519814 41 CTGTCTAGGCCTGTATAGAACAACAATTTGATTCTCTCAAT CTGTCTAGGCCTGTATAGAACAACAATTTGATTCTCTCACT < 41bp 1 0.707427478360875 1 0.136003792285919 experiment 0.585145043278249 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519794 chr12:105519813 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_41158 0 0 1 0 2 WASHC4 chr12:105519782 3'AG 105519782 Downstream 32bp
chr12 105519813 105519813 1 + A C UCEC 105519794 + 105519774 105519814 41 CTGTCTAGGCCTGTATAGAACAACAATTTGATTCTCTCAAT CTGTCTAGGCCTGTATAGAACAACAATTTGATTCTCTCACT < 41bp 1 0.707427478360875 1 0.136003792285919 experiment 0.585145043278249 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519794 chr12:105519813 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_41158 0 0 1 0 2 WASHC4 chr12:105519905 5'GT 105519905 Upstream 93bp
chr8 97316316 97316316 1 + C T UCEC 97316303 + 97316283 97316323 41 CACCGGGAAGATCAAGAGAGCTGTTCTGCAGTTCACTCCTG CACCGGGAAGATCAAGAGAGCTGTTCTGCAGTTTACTCCTG < 41bp 1 0.262884230203859 1 0.0424289107322693 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97316303 chr8:97316316 synonymous SNV . 0 34 hm5C_associated_SNPs_41159 0 0 1 0 2 PTDSS1 chr8:97316268 3'AG 97316268 Downstream 49bp
chr8 97316316 97316316 1 + C T UCEC 97316303 + 97316283 97316323 41 CACCGGGAAGATCAAGAGAGCTGTTCTGCAGTTCACTCCTG CACCGGGAAGATCAAGAGAGCTGTTCTGCAGTTTACTCCTG < 41bp 1 0.262884230203859 1 0.0424289107322693 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97316303 chr8:97316316 synonymous SNV . 0 34 hm5C_associated_SNPs_41159 0 0 1 0 2 PTDSS1 chr8:97316409 5'GT 97316409 Upstream 94bp
chrX 70517706 70517706 1 + G A UCEC 70517707 + 70517687 70517727 41 CAGGAGGAAGAGCGCAGGCGCCGTGAAGAAGAGATGCGGCG CAGGAGGAAGAGCGCAGGCACCGTGAAGAAGAGATGCGGCG < 41bp 1 0.247964400271472 1 0.323331475257874 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517707 chrX:70517706 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_41160 0 0 1 0 2 NONO chrX:70517686 3'AG 70517686 Downstream 21bp
chrX 70517706 70517706 1 + G A UCEC 70517707 + 70517687 70517727 41 CAGGAGGAAGAGCGCAGGCGCCGTGAAGAAGAGATGCGGCG CAGGAGGAAGAGCGCAGGCACCGTGAAGAAGAGATGCGGCG < 41bp 1 0.247964400271472 1 0.323331475257874 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517707 chrX:70517706 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_41160 0 0 1 0 2 NONO chrX:70517788 5'GT 70517788 Upstream 83bp
chr15 101169706 101169706 1 + C T UCEC 101169701 + 101169681 101169721 41 CTCTTCACTATGCAGCCATGCATGGCCGGGCCCGCATTGCA CTCTTCACTATGCAGCCATGCATGGTCGGGCCCGCATTGCA < 41bp 1 0.473410097092327 1 0.147948831319809 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ASB7 ENSG00000183475 CDS Human protein_coding chr15:101169701 chr15:101169706 synonymous SNV . 0 26 hm5C_associated_SNPs_41164 0 0 1 0 1 ASB7 chr15:101169642 3'AG 101169642 Downstream 65bp
chr10 70726913 70726913 1 + A G UCEC 70726923 + 70726903 70726943 41 TGGATATGGGATTTGCTGATCAAGTGGAAGAGATTTTAAGT TGGATATGGGGTTTGCTGATCAAGTGGAAGAGATTTTAAGT < 41bp 1 0.515687118509964 1 0.542935132980347 experiment 0.968625762980072 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX21 ENSG00000165732 CDS Human protein_coding chr10:70726923 chr10:70726913 synonymous SNV . 0 11 hm5C_associated_SNPs_41173 0 0 1 0 1 DDX21 chr10:70726959 5'GT 70726959 Upstream 47bp
chrX 64956690 64956690 1 + A C UCEC 64956685 + 64956665 64956705 41 TGGAAAATGAGAAGAAGAAGCGTGAAATGGCAGAGAAGGAG TGGAAAATGAGAAGAAGAAGCGTGACATGGCAGAGAAGGAG < 41bp 1 0.499879035302556 1 0.626468777656555 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956685 chrX:64956690 nonsynonymous SNV 0.986 1 26 hm5C_associated_SNPs_41174 0 0 1 0 2 MSN chrX:64956657 3'AG 64956657 Downstream 34bp
chrX 64956690 64956690 1 + A C UCEC 64956685 + 64956665 64956705 41 TGGAAAATGAGAAGAAGAAGCGTGAAATGGCAGAGAAGGAG TGGAAAATGAGAAGAAGAAGCGTGACATGGCAGAGAAGGAG < 41bp 1 0.499879035302556 1 0.626468777656555 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956685 chrX:64956690 nonsynonymous SNV 0.986 1 26 hm5C_associated_SNPs_41174 0 0 1 0 2 MSN chrX:64956787 5'GT 64956787 Upstream 98bp
chrX 64956690 64956690 1 + A C UCEC 64956695 + 64956675 64956715 41 GAAGAAGAAGCGTGAAATGGCAGAGAAGGAGAAAGAGAAGA GAAGAAGAAGCGTGACATGGCAGAGAAGGAGAAAGAGAAGA < 41bp 1 0.510201131269502 1 0.431357324123383 experiment 0.979597737460997 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956695 chrX:64956690 nonsynonymous SNV 0.986 1 16 hm5C_associated_SNPs_41175 0 0 1 0 2 MSN chrX:64956657 3'AG 64956657 Downstream 34bp
chrX 64956690 64956690 1 + A C UCEC 64956695 + 64956675 64956715 41 GAAGAAGAAGCGTGAAATGGCAGAGAAGGAGAAAGAGAAGA GAAGAAGAAGCGTGACATGGCAGAGAAGGAGAAAGAGAAGA < 41bp 1 0.510201131269502 1 0.431357324123383 experiment 0.979597737460997 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956695 chrX:64956690 nonsynonymous SNV 0.986 1 16 hm5C_associated_SNPs_41175 0 0 1 0 2 MSN chrX:64956787 5'GT 64956787 Upstream 98bp
chr9 96411449 96411449 1 + G A UCEC 96411460 + 96411440 96411480 41 GCACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCGAG GCACCAACCACAAGCGGGTCCTCAACGTCACCAACCTCGAG < 41bp 1 0.432441982094492 1 0.305744171142578 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96411460 chr9:96411449 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_41176 0 0 1 0 2 PHF2 chr9:96411353 3'AG 96411353 Downstream 97bp
chr9 96411449 96411449 1 + G A UCEC 96411460 + 96411440 96411480 41 GCACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCGAG GCACCAACCACAAGCGGGTCCTCAACGTCACCAACCTCGAG < 41bp 1 0.432441982094492 1 0.305744171142578 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96411460 chr9:96411449 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_41176 0 0 1 0 2 PHF2 chr9:96411494 5'GT 96411494 Upstream 46bp
chr6 142758649 142758649 1 + G T UCEC 142758630 + 142758610 142758650 41 ATGTTCAGAAACAGTGGCGGCAGCATCTCTGCTGTGGTAGA ATGTTCAGAAACAGTGGCGGCAGCATCTCTGCTGTGGTATA < 41bp 1 0.448924214830519 1 0.134108662605286 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRG6 ENSG00000112414 CDS Human protein_coding chr6:142758630 chr6:142758649 nonsynonymous SNV 0.997 4 40 hm5C_associated_SNPs_41177 0 0 1 0 2 ADGRG6 chr6:142758571 3'AG 142758571 Downstream 79bp
chr6 142758649 142758649 1 + G T UCEC 142758630 + 142758610 142758650 41 ATGTTCAGAAACAGTGGCGGCAGCATCTCTGCTGTGGTAGA ATGTTCAGAAACAGTGGCGGCAGCATCTCTGCTGTGGTATA < 41bp 1 0.448924214830519 1 0.134108662605286 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRG6 ENSG00000112414 CDS Human protein_coding chr6:142758630 chr6:142758649 nonsynonymous SNV 0.997 4 40 hm5C_associated_SNPs_41177 0 0 1 0 2 ADGRG6 chr6:142758672 5'GT 142758672 Upstream 24bp
chr3 129197039 129197039 1 + C T UCEC 129197026 + 129197006 129197046 41 AGAAGTTTGAGTGCAACCTCCTGGTGGTGTGTGCCAATCAC AGAAGTTTGAGTGCAACCTCCTGGTGGTGTGTGTCAATCAC < 41bp 1 0.679818197111644 1 0.22866553068161 experiment 0.640363605776713 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFT122 ENSG00000163913 CDS Human protein_coding chr3:129197026 chr3:129197039 nonsynonymous SNV 0.510 2 34 hm5C_associated_SNPs_41178 0 0 1 4 1 IFT122 chr3:129197061 5'GT 129197061 Upstream 23bp
chr11 64132927 64132927 1 + G A UCEC 64132923 + 64132903 64132943 41 GCAGCCCCCCACCTGGGGACCCCCGAATCTTTCAGGTGAGG GCAGCCCCCCACCTGGGGACCCCCAAATCTTTCAGGTGAGG < 41bp 1 0.182603381725824 1 0.15715691447258 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64132923 chr11:64132927 nonsynonymous SNV 0.912 2 25 hm5C_associated_SNPs_41179 0 0 1 0 1 RPS6KA4 chr11:64132937 5'GT 64132937 Upstream 11bp
chr14 64990086 64990086 1 + C T UCEC 64990092 + 64990072 64990112 41 GAGAGCGTCAGTTGCGACTGCACAATGATATGCACAAAGGC GAGAGCGTCAGTTGTGACTGCACAATGATATGCACAAAGGC < 41bp 1 0.635701691749866 1 0.684686541557312 experiment 0.728596616500269 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZBTB1 ENSG00000126804 CDS Human protein_coding chr14:64990092 chr14:64990086 stopgain 1.000 0 15 hm5C_associated_SNPs_41180 0 0 1 0 1 ZBTB1 chr14:64990120 5'GT 64990120 Upstream 35bp
chr1 162470001 162470001 1 + C A UCEC 162470019 + 162469999 162470039 41 CTCATTGACTTTGGACTTAGCTTCAAAGAAGGCAATCAGGT CTAATTGACTTTGGACTTAGCTTCAAAGAAGGCAATCAGGT < 41bp 1 0.378493635712755 1 0.129003942012787 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162470019 chr1:162470001 synonymous SNV . 0 3 hm5C_associated_SNPs_41187 0 0 1 0 1 UHMK1 chr1:162470037 5'GT 162470037 Upstream 37bp
chr2 203157522 203157522 1 + G A UCEC 203157511 + 203157491 203157531 41 TTATACTAGGTGATTGAAATCTCTGAATATCGAACCCAGCT TTATACTAGGTGATTGAAATCTCTGAATATCAAACCCAGCT < 41bp 1 0.484275050868028 1 0.387015461921692 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOP58 ENSG00000055044 CDS Human protein_coding chr2:203157511 chr2:203157522 nonsynonymous SNV 0.998 4 32 hm5C_associated_SNPs_41188 0 0 1 0 1 NOP58 chr2:203157500 3'AG 203157500 Downstream 23bp
chrX 64887716 64887716 1 + A C UCEC 64887704 + 64887684 64887724 41 CAACTCCGCTGCCTTTGCCGCCACCATGCCCAAAACGGTGA CAACTCCGCTGCCTTTGCCGCCACCATGCCCACAACGGTGA < 41bp 1 0.309614157390452 1 0.0791624784469604 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MSN ENSG00000147065 CDS Human protein_coding chrX:64887704 chrX:64887716 nonsynonymous SNV 0.958 1 33 hm5C_associated_SNPs_41189 0 0 1 0 1 MSN chrX:64887720 5'GT 64887720 Upstream 5bp
chrX 64887716 64887716 1 + A C UCEC 64887705 + 64887685 64887725 41 AACTCCGCTGCCTTTGCCGCCACCATGCCCAAAACGGTGAG AACTCCGCTGCCTTTGCCGCCACCATGCCCACAACGGTGAG < 41bp 1 0.611235698462535 1 0.24550998210907 experiment 0.77752860307493 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MSN ENSG00000147065 CDS Human protein_coding chrX:64887705 chrX:64887716 nonsynonymous SNV 0.958 1 32 hm5C_associated_SNPs_41190 0 0 1 0 1 MSN chrX:64887720 5'GT 64887720 Upstream 5bp
chr5 137767202 137767202 1 + T G UCEC 137767210 + 137767190 137767230 41 TGACTCAGGAATTCAGGCATCTCTCTAACACTCATACAAAT TGACTCAGGAATGCAGGCATCTCTCTAACACTCATACAAAT < 41bp 1 0.0880579845871562 1 0.448443681001663 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KDM3B ENSG00000120733 CDS Human protein_coding chr5:137767210 chr5:137767202 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_41193 0 0 1 0 2 KDM3B chr5:137767114 3'AG 137767114 Downstream 89bp
chr5 137767202 137767202 1 + T G UCEC 137767210 + 137767190 137767230 41 TGACTCAGGAATTCAGGCATCTCTCTAACACTCATACAAAT TGACTCAGGAATGCAGGCATCTCTCTAACACTCATACAAAT < 41bp 1 0.0880579845871562 1 0.448443681001663 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KDM3B ENSG00000120733 CDS Human protein_coding chr5:137767210 chr5:137767202 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_41193 0 0 1 0 2 KDM3B chr5:137767248 5'GT 137767248 Upstream 47bp
chr11 75115798 75115798 1 + C T UCEC 75115815 + 75115795 75115835 41 CCACGTGAGCATTGTGGAACCCAAAGATGAGATACTGCCCA CCATGTGAGCATTGTGGAACCCAAAGATGAGATACTGCCCA < 41bp 1 0.65326667301936 1 0.395027816295624 experiment 0.69346665396128 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS3 ENSG00000149273 CDS Human protein_coding chr11:75115815 chr11:75115798 synonymous SNV . 0 4 hm5C_associated_SNPs_41194 0 0 1 0 1 RPS3 chr11:75115716 3'AG 75115716 Downstream 83bp
chr21 45217968 45217968 1 + G T UCEC 45217948 + 45217928 45217968 41 GTGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGTCTGAG GTGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGTCTGAT < 41bp 1 0.167627687905403 1 0.284283876419067 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217948 chr21:45217968 nonsynonymous SNV 0.005 0 41 hm5C_associated_SNPs_41195 0 0 1 0 1 RRP1 chr21:45217981 5'GT 45217981 Upstream 14bp
chr21 45217968 45217968 1 + G T UCEC 45217964 + 45217944 45217984 41 CGCGCTGTCCCAGAAGAGGTCTGAGAAGCCGCCCGCAGGTG CGCGCTGTCCCAGAAGAGGTCTGATAAGCCGCCCGCAGGTG < 41bp 1 0.499545053031942 1 0.0884797275066376 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217964 chr21:45217968 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_41196 0 0 1 0 1 RRP1 chr21:45217981 5'GT 45217981 Upstream 14bp
chr9 137708900 137708900 1 + G A UCEC 137708906 + 137708886 137708926 41 TACTGGTGAACCAGGTCCATCGGGGCCTCCAGGAAAAAGGG TACTGGTGAACCAGATCCATCGGGGCCTCCAGGAAAAAGGG < 41bp 1 0.324718644804978 1 0.849877417087555 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137708906 chr9:137708900 nonsynonymous SNV 0.337 4 15 hm5C_associated_SNPs_41197 0 0 0 0 1 COL5A1 chr9:137708872 3'AG 137708872 Downstream 29bp
chr1 207498023 207498023 1 + G T UCEC 207498032 + 207498012 207498052 41 GTTACAGAAGAGAACCTTCTCTATCACCAAAACTAACTTGC GTTACAGAAGATAACCTTCTCTATCACCAAAACTAACTTGC < 41bp 1 0.187210854178782 1 0.132424980401993 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CD55 ENSG00000196352 CDS Human protein_coding chr1:207498032 chr1:207498023 stopgain 0.001 0 12 hm5C_associated_SNPs_41199 0 0 1 0 2 CD55 chr1:207498012 3'AG 207498012 Downstream 12bp
chr1 207498023 207498023 1 + G T UCEC 207498032 + 207498012 207498052 41 GTTACAGAAGAGAACCTTCTCTATCACCAAAACTAACTTGC GTTACAGAAGATAACCTTCTCTATCACCAAAACTAACTTGC < 41bp 1 0.187210854178782 1 0.132424980401993 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CD55 ENSG00000196352 CDS Human protein_coding chr1:207498032 chr1:207498023 stopgain 0.001 0 12 hm5C_associated_SNPs_41199 0 0 1 0 2 CD55 chr1:207498095 5'GT 207498095 Upstream 73bp
chr16 1793378 1793378 1 + C T UCEC 1793369 + 1793349 1793389 41 ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACG ACCTCCCTGAACGTGTTCCCCCTGGCTGATGGCACGGTACG < 41bp 1 0.140027301006347 1 0.13862806558609 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1793369 chr16:1793378 synonymous SNV . 0 30 hm5C_associated_SNPs_41200 0 0 1 0 3 MAPK8IP3 chr16:1793333 3'AG 1793333 Downstream 46bp
chr16 1793378 1793378 1 + C T UCEC 1793369 + 1793349 1793389 41 ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACG ACCTCCCTGAACGTGTTCCCCCTGGCTGATGGCACGGTACG < 41bp 1 0.140027301006347 1 0.13862806558609 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1793369 chr16:1793378 synonymous SNV . 0 30 hm5C_associated_SNPs_41200 0 0 1 0 3 MAPK8IP3 chr16:1793336 3'AG 1793336 Downstream 43bp
chr16 1793378 1793378 1 + C T UCEC 1793369 + 1793349 1793389 41 ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACG ACCTCCCTGAACGTGTTCCCCCTGGCTGATGGCACGGTACG < 41bp 1 0.140027301006347 1 0.13862806558609 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1793369 chr16:1793378 synonymous SNV . 0 30 hm5C_associated_SNPs_41200 0 0 1 0 3 MAPK8IP3 chr16:1793477 5'GT 1793477 Upstream 100bp
chr1 120286596 120286596 1 + C T UCEC 120286594 + 120286574 120286614 41 ACCTGGCACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCT ACCTGGCACGTCATGGGCATCTTCTCCTTGCTGCCCAGCCT < 41bp 1 0.231642538327794 1 0.0360862016677856 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286594 chr1:120286596 nonsynonymous SNV 0.992 5 23 hm5C_associated_SNPs_41201 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 88bp
chr1 120286596 120286596 1 + C T UCEC 120286597 + 120286577 120286617 41 TGGCACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCTGGA TGGCACGTCATGGGCATCTTCTCCTTGCTGCCCAGCCTGGA < 41bp 1 0.634341921655117 1 0.542988777160645 experiment 0.731316156689766 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286597 chr1:120286596 nonsynonymous SNV 0.992 5 20 hm5C_associated_SNPs_41202 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 88bp
chr1 120286596 120286596 1 + C T UCEC 120286600 + 120286580 120286620 41 CACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCTGGAAGC CACGTCATGGGCATCTTCTCCTTGCTGCCCAGCCTGGAAGC < 41bp 1 0.421981025533399 1 0.479301869869232 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286600 chr1:120286596 nonsynonymous SNV 0.992 5 17 hm5C_associated_SNPs_41203 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 88bp
chr2 11300668 11300668 1 + G A UCEC 11300656 + 11300636 11300676 41 CGCTGACCTACCTGGAGTACCCCATCCTCATCGCGCAAGGT CGCTGACCTACCTGGAGTACCCCATCCTCATCACGCAAGGT < 41bp 1 0.181091343774561 1 0.148583024740219 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11300656 chr2:11300668 nonsynonymous SNV 0.992 0 33 hm5C_associated_SNPs_41204 0 0 1 0 2 PQLC3 chr2:11300592 3'AG 11300592 Downstream 77bp
chr2 11300668 11300668 1 + G A UCEC 11300656 + 11300636 11300676 41 CGCTGACCTACCTGGAGTACCCCATCCTCATCGCGCAAGGT CGCTGACCTACCTGGAGTACCCCATCCTCATCACGCAAGGT < 41bp 1 0.181091343774561 1 0.148583024740219 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11300656 chr2:11300668 nonsynonymous SNV 0.992 0 33 hm5C_associated_SNPs_41204 0 0 1 0 2 PQLC3 chr2:11300674 5'GT 11300674 Upstream 7bp
chr1 32620221 32620221 1 + C T UCEC 32620232 + 32620212 32620252 41 GACAATTATCGAATGAAGAGCTATAAGAACAATGCTCTAAA GACAATTATTGAATGAAGAGCTATAAGAACAATGCTCTAAA < 41bp 1 0.220531921342532 1 0.2546306848526 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620232 chr1:32620221 stopgain 1.000 1 10 hm5C_associated_SNPs_41205 0 0 1 0 1 KPNA6 chr1:32620189 3'AG 32620189 Downstream 33bp
chr13 28752052 28752052 1 + A G UCEC 28752051 + 28752031 28752071 41 TTTAATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAA TTTAATGACTTTGGTGCCCTCGACATCTCTCAGAGACGAAA < 41bp 1 0.621887477165753 1 0.214514434337616 experiment 0.756225045668495 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752051 chr13:28752052 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_41206 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 51bp
chr13 28752052 28752052 1 + A G UCEC 28752051 + 28752031 28752071 41 TTTAATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAA TTTAATGACTTTGGTGCCCTCGACATCTCTCAGAGACGAAA < 41bp 1 0.621887477165753 1 0.214514434337616 experiment 0.756225045668495 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752051 chr13:28752052 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_41206 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 21bp
chr13 28752052 28752052 1 + A G UCEC 28752054 + 28752034 28752074 41 AATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGT AATGACTTTGGTGCCCTCGACATCTCTCAGAGACGAAAGGT < 41bp 1 0.101427174741096 1 0.238498419523239 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752054 chr13:28752052 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_41207 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 51bp
chr13 28752052 28752052 1 + A G UCEC 28752054 + 28752034 28752074 41 AATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGT AATGACTTTGGTGCCCTCGACATCTCTCAGAGACGAAAGGT < 41bp 1 0.101427174741096 1 0.238498419523239 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752054 chr13:28752052 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_41207 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 21bp
chr13 28752052 28752052 1 + A G UCEC 28752057 + 28752037 28752077 41 GACTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGG GACTTTGGTGCCCTCGACATCTCTCAGAGACGAAAGGTAGG < 41bp 1 0.132508005256226 1 0.285690724849701 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752057 chr13:28752052 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_41208 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 51bp
chr13 28752052 28752052 1 + A G UCEC 28752057 + 28752037 28752077 41 GACTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGG GACTTTGGTGCCCTCGACATCTCTCAGAGACGAAAGGTAGG < 41bp 1 0.132508005256226 1 0.285690724849701 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752057 chr13:28752052 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_41208 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 21bp
chr13 28752052 28752052 1 + A G UCEC 28752059 + 28752039 28752079 41 CTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGGTG CTTTGGTGCCCTCGACATCTCTCAGAGACGAAAGGTAGGTG < 41bp 1 0.56045609509274 1 0.273006349802017 experiment 0.879087809814521 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752059 chr13:28752052 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_41209 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 51bp
chr13 28752052 28752052 1 + A G UCEC 28752059 + 28752039 28752079 41 CTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGGTG CTTTGGTGCCCTCGACATCTCTCAGAGACGAAAGGTAGGTG < 41bp 1 0.56045609509274 1 0.273006349802017 experiment 0.879087809814521 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752059 chr13:28752052 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_41209 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 21bp
chr13 28752052 28752052 1 + A G UCEC 28752061 + 28752041 28752081 41 TTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGGTGAA TTGGTGCCCTCGACATCTCTCAGAGACGAAAGGTAGGTGAA < 41bp 1 0.545872895446568 1 0.907371997833252 experiment 0.908254209106863 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752061 chr13:28752052 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_41210 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 51bp
chr13 28752052 28752052 1 + A G UCEC 28752061 + 28752041 28752081 41 TTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGGTGAA TTGGTGCCCTCGACATCTCTCAGAGACGAAAGGTAGGTGAA < 41bp 1 0.545872895446568 1 0.907371997833252 experiment 0.908254209106863 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752061 chr13:28752052 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_41210 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 21bp
chr15 41854876 41854876 1 + C T UCEC 41854884 + 41854864 41854904 41 AACTACGAAGATCGGGGGACCCGCTCCCTCTCCATCTGTTT AACTACGAAGATTGGGGGACCCGCTCCCTCTCCATCTGTTT < 41bp 1 0.0551166556113555 1 0.0654378831386566 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41854884 chr15:41854876 synonymous SNV . 0 13 hm5C_associated_SNPs_41211 0 0 0 0 1 TYRO3 chr15:41854916 5'GT 41854916 Upstream 41bp
chr15 41854876 41854876 1 + C T UCEC 41854885 + 41854865 41854905 41 ACTACGAAGATCGGGGGACCCGCTCCCTCTCCATCTGTTTT ACTACGAAGATTGGGGGACCCGCTCCCTCTCCATCTGTTTT < 41bp 1 0.130586943790461 1 0.0371924340724945 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41854885 chr15:41854876 synonymous SNV . 0 12 hm5C_associated_SNPs_41212 0 0 0 0 1 TYRO3 chr15:41854916 5'GT 41854916 Upstream 41bp
chr19 35530600 35530600 1 + G A UCEC 35530583 + 35530563 35530603 41 TGAAAGCAAAGAGAACTGCACGGGCGTCCAGGTGGCCGAAT TGAAAGCAAAGAGAACTGCACGGGCGTCCAGGTGGCCAAAT < 41bp 1 0.63041849327637 1 0.577061057090759 experiment 0.739163013447261 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCN1B ENSG00000105711 CDS Human protein_coding chr19:35530583 chr19:35530600 nonsynonymous SNV 0.982 2 38 hm5C_associated_SNPs_41214 0 0 0 0 2 SCN1B chr19:35530539 3'AG 35530539 Downstream 62bp
chr19 35530600 35530600 1 + G A UCEC 35530583 + 35530563 35530603 41 TGAAAGCAAAGAGAACTGCACGGGCGTCCAGGTGGCCGAAT TGAAAGCAAAGAGAACTGCACGGGCGTCCAGGTGGCCAAAT < 41bp 1 0.63041849327637 1 0.577061057090759 experiment 0.739163013447261 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCN1B ENSG00000105711 CDS Human protein_coding chr19:35530583 chr19:35530600 nonsynonymous SNV 0.982 2 38 hm5C_associated_SNPs_41214 0 0 0 0 2 SCN1B chr19:35530610 5'GT 35530610 Upstream 11bp
chr7 128119309 128119309 1 + C T UCEC 128119323 + 128119303 128119343 41 CGAATTCCCTGAGCTGGCACCTAGCCAAAATCAAAATCATT CGAATTTCCTGAGCTGGCACCTAGCCAAAATCAAAATCATT < 41bp 1 0.113438931761569 1 0.23765555024147 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control METTL2B ENSG00000165055 CDS Human protein_coding chr7:128119323 chr7:128119309 synonymous SNV . 0 7 hm5C_associated_SNPs_41215 0 0 1 0 1 METTL2B chr7:128119212 3'AG 128119212 Downstream 98bp
chr7 91735001 91735001 1 + T G UCEC 91735017 + 91734997 91735037 41 AATTTTTGGTTCGACGGTGGCATCGAGTCACAGGTTCTGTT AATTGTTGGTTCGACGGTGGCATCGAGTCACAGGTTCTGTT < 41bp 1 0.147004977485662 1 0.295061677694321 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91735017 chr7:91735001 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_41216 0 0 1 0 2 AKAP9 chr7:91734992 3'AG 91734992 Downstream 10bp
chr7 91735001 91735001 1 + T G UCEC 91735017 + 91734997 91735037 41 AATTTTTGGTTCGACGGTGGCATCGAGTCACAGGTTCTGTT AATTGTTGGTTCGACGGTGGCATCGAGTCACAGGTTCTGTT < 41bp 1 0.147004977485662 1 0.295061677694321 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91735017 chr7:91735001 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_41216 0 0 1 0 2 AKAP9 chr7:91735077 5'GT 91735077 Upstream 77bp
chr7 106826911 106826911 1 + T G UCEC 106826904 + 106826884 106826924 41 TGGCCTTCAACTGTCTGGCACTGTTTTTTGAAAGGTAAAAC TGGCCTTCAACTGTCTGGCACTGTTTTGTGAAAGGTAAAAC < 41bp 1 0.11963682460844 1 0.0267341434955597 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HBP1 ENSG00000105856 CDS Human protein_coding chr7:106826904 chr7:106826911 nonsynonymous SNV 0.996 5 28 hm5C_associated_SNPs_41217 0 0 0 0 1 HBP1 chr7:106826917 5'GT 106826917 Upstream 7bp
chr20 35866812 35866812 1 + G A UCEC 35866808 + 35866788 35866828 41 CCTCTTTCCTTTGGCAGGATCGCTGCAGAGCAGAGCAGTAG CCTCTTTCCTTTGGCAGGATCGCTACAGAGCAGAGCAGTAG < 41bp 1 0.43656861209344 1 0.573533892631531 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35866808 chr20:35866812 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_41218 0 0 1 0 2 RPN2 chr20:35866805 3'AG 35866805 Downstream 8bp
chr20 35866812 35866812 1 + G A UCEC 35866808 + 35866788 35866828 41 CCTCTTTCCTTTGGCAGGATCGCTGCAGAGCAGAGCAGTAG CCTCTTTCCTTTGGCAGGATCGCTACAGAGCAGAGCAGTAG < 41bp 1 0.43656861209344 1 0.573533892631531 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35866808 chr20:35866812 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_41218 0 0 1 0 2 RPN2 chr20:35866852 5'GT 35866852 Upstream 41bp
chr11 65156921 65156921 1 + C T UCEC 65156938 + 65156918 65156958 41 CACCGCGCTGTCCGCGAGGTCCTGCAGCTTCCAGACATCGC CACTGCGCTGTCCGCGAGGTCCTGCAGCTTCCAGACATCGC < 41bp 1 0.073121579562102 1 0.0793961882591248 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65156938 chr11:65156921 nonsynonymous SNV 0.984 2 4 hm5C_associated_SNPs_41219 0 0 0 0 2 FRMD8 chr11:65156832 3'AG 65156832 Downstream 90bp
chr11 65156921 65156921 1 + C T UCEC 65156938 + 65156918 65156958 41 CACCGCGCTGTCCGCGAGGTCCTGCAGCTTCCAGACATCGC CACTGCGCTGTCCGCGAGGTCCTGCAGCTTCCAGACATCGC < 41bp 1 0.073121579562102 1 0.0793961882591248 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65156938 chr11:65156921 nonsynonymous SNV 0.984 2 4 hm5C_associated_SNPs_41219 0 0 0 0 2 FRMD8 chr11:65156999 5'GT 65156999 Upstream 79bp
chr2 55191148 55191148 1 + C T UCEC 55191153 + 55191133 55191173 41 CAAGGTGAGCTTGGGCCATGCGGCCAGGTGTGCAGCCTACA CAAGGTGAGCTTGGGTCATGCGGCCAGGTGTGCAGCCTACA < 41bp 1 0.240404636829324 1 0.37557527422905 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EML6 ENSG00000214595 CDS Human protein_coding chr2:55191153 chr2:55191148 synonymous SNV . 0 16 hm5C_associated_SNPs_41222 0 0 1 0 1 EML6 chr2:55191122 3'AG 55191122 Downstream 27bp
chr17 64785043 64785043 1 + C T UCEC 64785046 + 64785026 64785066 41 GCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAACAG GCCTTCTTCCGGAGGATTGACTGGGAAAAACTGGAGAACAG < 41bp 1 0.702080509204499 1 0.582260847091675 experiment 0.595838981591003 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785046 chr17:64785043 synonymous SNV . 0 18 hm5C_associated_SNPs_41224 0 0 1 0 2 PRKCA chr17:64784957 3'AG 64784957 Downstream 87bp
chr17 64785043 64785043 1 + C T UCEC 64785046 + 64785026 64785066 41 GCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAACAG GCCTTCTTCCGGAGGATTGACTGGGAAAAACTGGAGAACAG < 41bp 1 0.702080509204499 1 0.582260847091675 experiment 0.595838981591003 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785046 chr17:64785043 synonymous SNV . 0 18 hm5C_associated_SNPs_41224 0 0 1 0 2 PRKCA chr17:64785097 5'GT 64785097 Upstream 55bp
chr10 120867621 120867621 1 + G A UCEC 120867616 + 120867596 120867636 41 CCCTTTGTCTTTGGTCAGTACAGAAGAACATGGTTTTATAT CCCTTTGTCTTTGGTCAGTACAGAAAAACATGGTTTTATAT < 41bp 1 0.601147920436092 1 0.434351027011871 experiment 0.797704159127816 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM45A ENSG00000119979 CDS Human protein_coding chr10:120867616 chr10:120867621 nonsynonymous SNV 0.999 1 26 hm5C_associated_SNPs_41225 0 0 0 1 1 FAM45A chr10:120867676 5'GT 120867676 Upstream 56bp
chr5 159437859 159437859 1 + G T UCEC 159437849 + 159437829 159437869 41 AGAACTGGAAAAAAACATGTCGGATGAAGAGAAACAGGTAA AGAACTGGAAAAAAACATGTCGGATGAAGATAAACAGGTAA < 41bp 1 0.461834833335423 1 0.651363492012024 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TTC1 ENSG00000113312 CDS Human protein_coding chr5:159437849 chr5:159437859 nonsynonymous SNV 0.999 1 31 hm5C_associated_SNPs_41226 0 0 1 0 1 TTC1 chr5:159437865 5'GT 159437865 Upstream 7bp
chr12 65264454 65264454 1 + G A UCEC 65264472 + 65264452 65264492 41 TCGAAGTGAATACCATGCAGCTTTTAACAGTATGATGATGG TCAAAGTGAATACCATGCAGCTTTTAACAGTATGATGATGG < 41bp 1 0.0154936914757364 1 0.0269386172294617 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBC1D30 ENSG00000111490 CDS Human protein_coding chr12:65264472 chr12:65264454 nonsynonymous SNV 0.116 1 3 hm5C_associated_SNPs_41228 0 0 0 0 1 TBC1D30 chr12:65264382 3'AG 65264382 Downstream 73bp
chr3 14697037 14697037 1 + A C UCEC 14697040 + 14697020 14697060 41 TAAAATTATTCTCCAGAAACCAAGTATCTGGAGCAAACAGA TAAAATTATTCTCCAGACACCAAGTATCTGGAGCAAACAGA < 41bp 1 0.234133637108791 1 0.0959219336509705 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC174 ENSG00000154781 CDS Human protein_coding chr3:14697040 chr3:14697037 nonsynonymous SNV 0.994 3 18 hm5C_associated_SNPs_41230 0 0 0 0 2 CCDC174 chr3:14697036 3'AG 14697036 Downstream 2bp
chr3 14697037 14697037 1 + A C UCEC 14697040 + 14697020 14697060 41 TAAAATTATTCTCCAGAAACCAAGTATCTGGAGCAAACAGA TAAAATTATTCTCCAGACACCAAGTATCTGGAGCAAACAGA < 41bp 1 0.234133637108791 1 0.0959219336509705 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC174 ENSG00000154781 CDS Human protein_coding chr3:14697040 chr3:14697037 nonsynonymous SNV 0.994 3 18 hm5C_associated_SNPs_41230 0 0 0 0 2 CCDC174 chr3:14697136 5'GT 14697136 Upstream 100bp
chr13 114203814 114203814 1 + G A UCEC 114203825 + 114203805 114203845 41 TGCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCA TGCAATCACAAGGTGTGTGCCCAGACCGGAGAGACGGTCCA < 41bp 1 0.63595637843256 1 0.115347623825073 experiment 0.728087243134881 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114203825 chr13:114203814 synonymous SNV . 0 10 hm5C_associated_SNPs_41231 0 0 0 0 1 TMCO3 chr13:114203740 3'AG 114203740 Downstream 75bp
chr13 114203814 114203814 1 + G A UCEC 114203826 + 114203806 114203846 41 GCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCAG GCAATCACAAGGTGTGTGCCCAGACCGGAGAGACGGTCCAG < 41bp 1 0.559274431397206 1 0.133146345615387 experiment 0.881451137205589 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114203826 chr13:114203814 synonymous SNV . 0 9 hm5C_associated_SNPs_41232 0 0 0 0 1 TMCO3 chr13:114203740 3'AG 114203740 Downstream 75bp
chr5 131930627 131930627 1 + G T UCEC 131930610 + 131930590 131930630 41 AAAATCATATAAATAATGAACTAAAAAGAAAGGAAGAGCAG AAAATCATATAAATAATGAACTAAAAAGAAAGGAAGATCAG < 41bp 1 0.387638305176511 1 0.263985514640808 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131930610 chr5:131930627 nonsynonymous SNV 0.988 1 38 hm5C_associated_SNPs_41234 0 0 1 0 1 RAD50 chr5:131930561 3'AG 131930561 Downstream 67bp
chr19 11123752 11123752 1 + G A UCEC 11123747 + 11123727 11123767 41 ATCACGTACCTCATGGAGCACAAACGCATCAATGGGCCCTT ATCACGTACCTCATGGAGCACAAACACATCAATGGGCCCTT < 41bp 1 0.13423110965099 1 0.192901700735092 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11123747 chr19:11123752 nonsynonymous SNV 0.997 4 26 hm5C_associated_SNPs_41236 0 0 1 0 1 SMARCA4 chr19:11123788 5'GT 11123788 Upstream 37bp
chr1 31905819 31905819 1 + G A UCEC 31905832 + 31905812 31905852 41 AGTCTGCGCTCCTCAGACCACCGGCAGGTGAACAGCCTGAT AGTCTGCACTCCTCAGACCACCGGCAGGTGAACAGCCTGAT < 41bp 1 0.288477010565316 1 0.448188096284866 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31905832 chr1:31905819 nonsynonymous SNV 0.893 3 8 hm5C_associated_SNPs_41242 0 0 1 0 1 SERINC2 chr1:31905814 3'AG 31905814 Downstream 6bp
chr21 42629161 42629161 1 + C T UCEC 42629163 + 42629143 42629183 41 TTTCCCCATCCACAAATGCGCTGGTGATCGGTGCCACGGTG TTTCCCCATCCACAAATGTGCTGGTGATCGGTGCCACGGTG < 41bp 1 0.528837126539526 1 0.191465586423874 experiment 0.942325746920949 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BACE2 ENSG00000182240 CDS Human protein_coding chr21:42629163 chr21:42629161 nonsynonymous SNV 0.453 2 19 hm5C_associated_SNPs_41243 0 0 1 0 2 BACE2 chr21:42629085 3'AG 42629085 Downstream 77bp
chr21 42629161 42629161 1 + C T UCEC 42629163 + 42629143 42629183 41 TTTCCCCATCCACAAATGCGCTGGTGATCGGTGCCACGGTG TTTCCCCATCCACAAATGTGCTGGTGATCGGTGCCACGGTG < 41bp 1 0.528837126539526 1 0.191465586423874 experiment 0.942325746920949 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BACE2 ENSG00000182240 CDS Human protein_coding chr21:42629163 chr21:42629161 nonsynonymous SNV 0.453 2 19 hm5C_associated_SNPs_41243 0 0 1 0 2 BACE2 chr21:42629253 5'GT 42629253 Upstream 93bp
chr8 30332299 30332299 1 + G A UCEC 30332319 + 30332299 30332339 41 GGACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACCT AGACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACCT < 41bp 1 0.0656647440709686 1 0.0508638620376587 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RBPMS ENSG00000157110 CDS Human protein_coding chr8:30332319 chr8:30332299 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_41245 0 0 1 0 2 RBPMS chr8:30332295 3'AG 30332295 Downstream 5bp
chr8 30332299 30332299 1 + G A UCEC 30332319 + 30332299 30332339 41 GGACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACCT AGACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACCT < 41bp 1 0.0656647440709686 1 0.0508638620376587 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RBPMS ENSG00000157110 CDS Human protein_coding chr8:30332319 chr8:30332299 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_41245 0 0 1 0 2 RBPMS chr8:30332372 5'GT 30332372 Upstream 74bp
chr1 12061532 12061532 1 + C T UCEC 12061544 + 12061524 12061564 41 TCCCAGGCCGGGGACCGCATCTTCTTTGTGTCTGCTAAGGA TCCCAGGCTGGGGACCGCATCTTCTTTGTGTCTGCTAAGGA < 41bp 1 0.281834930464635 1 0.0981212854385376 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061544 chr1:12061532 synonymous SNV . 0 9 hm5C_associated_SNPs_41246 4 0 1 0 2 MFN2 chr1:12061458 3'AG 12061458 Downstream 75bp
chr1 12061532 12061532 1 + C T UCEC 12061544 + 12061524 12061564 41 TCCCAGGCCGGGGACCGCATCTTCTTTGTGTCTGCTAAGGA TCCCAGGCTGGGGACCGCATCTTCTTTGTGTCTGCTAAGGA < 41bp 1 0.281834930464635 1 0.0981212854385376 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061544 chr1:12061532 synonymous SNV . 0 9 hm5C_associated_SNPs_41246 4 0 1 0 2 MFN2 chr1:12061611 5'GT 12061611 Upstream 80bp
chr6 42975949 42975949 1 + G A UCEC 42975958 + 42975938 42975978 41 GGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGAG GGTTCATCTACAAGACGGAGCATCACAACGGGATTGCTGAG < 41bp 1 0.236469920474474 1 0.0574996769428253 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975958 chr6:42975949 nonsynonymous SNV 0.992 4 12 hm5C_associated_SNPs_41252 0 0 1 0 2 PPP2R5D chr6:42975939 3'AG 42975939 Downstream 11bp
chr6 42975949 42975949 1 + G A UCEC 42975958 + 42975938 42975978 41 GGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGAG GGTTCATCTACAAGACGGAGCATCACAACGGGATTGCTGAG < 41bp 1 0.236469920474474 1 0.0574996769428253 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975958 chr6:42975949 nonsynonymous SNV 0.992 4 12 hm5C_associated_SNPs_41252 0 0 1 0 2 PPP2R5D chr6:42975998 5'GT 42975998 Upstream 50bp
chr4 1955177 1955177 1 + G A UCEC 1955190 + 1955170 1955210 41 GAGAGCCGAGGTTTCCGCTGCCCCCTCCACAGCTGTGTGAG GAGAGCCAAGGTTTCCGCTGCCCCCTCCACAGCTGTGTGAG < 41bp 1 0.0727804842651651 1 0.135983973741531 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NSD2 ENSG00000109685 CDS Human protein_coding chr4:1955190 chr4:1955177 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_41253 0 0 1 0 1 NSD2 chr4:1955251 5'GT 1955251 Upstream 75bp
chr12 4459024 4459024 1 + G T UCEC 4459031 + 4459011 4459051 41 CAAATTTTGCAAAGATATGACGGTAAAGTATGACTCAAGAC CAAATTTTGCAAATATATGACGGTAAAGTATGACTCAAGAC < 41bp 1 0.427500255311257 1 0.386393964290619 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TIGAR ENSG00000078237 CDS Human protein_coding chr12:4459031 chr12:4459024 nonsynonymous SNV 0.954 2 14 hm5C_associated_SNPs_41254 0 0 1 0 1 TIGAR chr12:4458985 3'AG 4458985 Downstream 40bp
chr1 198231716 198231716 1 + A G UCEC 198231736 + 198231716 198231756 41 AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG GATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG < 41bp 1 0.189965701308607 1 0.0756292343139648 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231736 chr1:198231716 synonymous SNV . 0 1 hm5C_associated_SNPs_41256 0 0 1 0 2 NEK7 chr1:198231705 3'AG 198231705 Downstream 12bp
chr1 198231716 198231716 1 + A G UCEC 198231736 + 198231716 198231756 41 AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG GATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG < 41bp 1 0.189965701308607 1 0.0756292343139648 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231736 chr1:198231716 synonymous SNV . 0 1 hm5C_associated_SNPs_41256 0 0 1 0 2 NEK7 chr1:198231767 5'GT 198231767 Upstream 52bp
chr19 39125694 39125694 1 + C A UCEC 39125675 + 39125655 39125695 41 GAGCAAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATCT GAGCAAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATAT < 41bp 1 0.252698963872881 1 0.430244505405426 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39125675 chr19:39125694 synonymous SNV . 0 40 hm5C_associated_SNPs_41257 0 0 1 0 2 EIF3K chr19:39125633 3'AG 39125633 Downstream 62bp
chr19 39125694 39125694 1 + C A UCEC 39125675 + 39125655 39125695 41 GAGCAAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATCT GAGCAAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATAT < 41bp 1 0.252698963872881 1 0.430244505405426 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39125675 chr19:39125694 synonymous SNV . 0 40 hm5C_associated_SNPs_41257 0 0 1 0 2 EIF3K chr19:39125758 5'GT 39125758 Upstream 65bp
chr19 39125694 39125694 1 + C A UCEC 39125679 + 39125659 39125699 41 AAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATCTTCAT AAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATATTCAT < 41bp 1 0.566069348541996 1 0.413999289274216 experiment 0.867861302916008 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39125679 chr19:39125694 synonymous SNV . 0 36 hm5C_associated_SNPs_41258 0 0 1 0 2 EIF3K chr19:39125633 3'AG 39125633 Downstream 62bp
chr19 39125694 39125694 1 + C A UCEC 39125679 + 39125659 39125699 41 AAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATCTTCAT AAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATATTCAT < 41bp 1 0.566069348541996 1 0.413999289274216 experiment 0.867861302916008 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39125679 chr19:39125694 synonymous SNV . 0 36 hm5C_associated_SNPs_41258 0 0 1 0 2 EIF3K chr19:39125758 5'GT 39125758 Upstream 65bp
chr20 60878633 60878633 1 + C A UCEC 60878643 + 60878623 60878663 41 GGATGACGACCTCAGGCGCGCTCTTTCCAAGCCTGGTGCCA GGATGACGACATCAGGCGCGCTCTTTCCAAGCCTGGTGCCA < 41bp 1 0.160183232048182 1 0.0168150663375854 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60878643 chr20:60878633 synonymous SNV . 0 11 hm5C_associated_SNPs_41260 0 0 1 0 1 ADRM1 chr20:60878624 3'AG 60878624 Downstream 10bp
chr15 100215656 100215656 1 + T C UCEC 100215637 + 100215617 100215657 41 CACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGTC CACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGCC < 41bp 1 0.285660800535492 1 0.514192759990692 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEF2A ENSG00000068305 CDS Human protein_coding chr15:100215637 chr15:100215656 synonymous SNV . 0 40 hm5C_associated_SNPs_41263 0 0 1 0 2 MEF2A chr15:100215604 3'AG 100215604 Downstream 53bp
chr15 100215656 100215656 1 + T C UCEC 100215637 + 100215617 100215657 41 CACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGTC CACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGCC < 41bp 1 0.285660800535492 1 0.514192759990692 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEF2A ENSG00000068305 CDS Human protein_coding chr15:100215637 chr15:100215656 synonymous SNV . 0 40 hm5C_associated_SNPs_41263 0 0 1 0 2 MEF2A chr15:100215663 5'GT 100215663 Upstream 8bp
chr17 33324836 33324836 1 + C T UCEC 33324843 + 33324823 33324863 41 CTCAGAAATGAAGCGAGTCACAGTAAGTGAAGACCCTATGC CTCAGAAATGAAGTGAGTCACAGTAAGTGAAGACCCTATGC < 41bp 1 0.65121564654917 1 0.244450300931931 experiment 0.697568706901659 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33324843 chr17:33324836 stopgain 0.998 0 14 hm5C_associated_SNPs_41264 0 0 1 0 2 LIG3 chr17:33324757 3'AG 33324757 Downstream 80bp
chr17 33324836 33324836 1 + C T UCEC 33324843 + 33324823 33324863 41 CTCAGAAATGAAGCGAGTCACAGTAAGTGAAGACCCTATGC CTCAGAAATGAAGTGAGTCACAGTAAGTGAAGACCCTATGC < 41bp 1 0.65121564654917 1 0.244450300931931 experiment 0.697568706901659 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33324843 chr17:33324836 stopgain 0.998 0 14 hm5C_associated_SNPs_41264 0 0 1 0 2 LIG3 chr17:33324844 5'GT 33324844 Upstream 9bp
chr6 44219798 44219798 1 + G A UCEC 44219794 + 44219774 44219814 41 GAGCGAGTGCGGAAACGGGGCTTCGAGGTGGTATATATGAC GAGCGAGTGCGGAAACGGGGCTTCAAGGTGGTATATATGAC < 41bp 1 0.352119918086531 1 0.280385553836823 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219794 chr6:44219798 nonsynonymous SNV 0.986 3 25 hm5C_associated_SNPs_41266 0 0 1 0 1 HSP90AB1 chr6:44219736 3'AG 44219736 Downstream 63bp
chr6 44219798 44219798 1 + G A UCEC 44219814 + 44219794 44219834 41 CTTCGAGGTGGTATATATGACCGAGCCCATTGACGAGTACT CTTCAAGGTGGTATATATGACCGAGCCCATTGACGAGTACT < 41bp 1 0.330260970136454 1 0.177519381046295 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219814 chr6:44219798 nonsynonymous SNV 0.986 3 5 hm5C_associated_SNPs_41267 0 0 1 0 1 HSP90AB1 chr6:44219736 3'AG 44219736 Downstream 63bp
chr12 104336865 104336865 1 + C A UCEC 104336862 + 104336842 104336882 41 AATTTTGTAGGCTGAATCTTCTCCATTTGTTGAGCGACTTC AATTTTGTAGGCTGAATCTTCTCAATTTGTTGAGCGACTTC < 41bp 1 0.683520820726733 1 0.668353915214539 experiment 0.632958358546533 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104336862 chr12:104336865 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_41268 0 0 1 0 1 HSP90B1 chr12:104336852 3'AG 104336852 Downstream 14bp
chr17 17039737 17039737 1 + C T UCEC 17039743 + 17039723 17039763 41 CTGCCAGCTCCCTGCGGGAACCTGGGCTAGAGAGCAAAGAA CTGCCAGCTCCCTGTGGGAACCTGGGCTAGAGAGCAAAGAA < 41bp 1 0.181612811203069 1 0.311505675315857 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17039743 chr17:17039737 nonsynonymous SNV 0.312 2 15 hm5C_associated_SNPs_41269 0 0 1 0 1 MPRIP chr17:17039764 5'GT 17039764 Upstream 28bp
chr17 17039737 17039737 1 + C T UCEC 17039744 + 17039724 17039764 41 TGCCAGCTCCCTGCGGGAACCTGGGCTAGAGAGCAAAGAAG TGCCAGCTCCCTGTGGGAACCTGGGCTAGAGAGCAAAGAAG < 41bp 1 0.695316572762331 1 0.494005113840103 experiment 0.609366854475337 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17039744 chr17:17039737 nonsynonymous SNV 0.312 2 14 hm5C_associated_SNPs_41270 0 0 1 0 1 MPRIP chr17:17039764 5'GT 17039764 Upstream 28bp
chr17 17039737 17039737 1 + C T UCEC 17039749 + 17039729 17039769 41 GCTCCCTGCGGGAACCTGGGCTAGAGAGCAAAGAAGGTGAG GCTCCCTGTGGGAACCTGGGCTAGAGAGCAAAGAAGGTGAG < 41bp 1 0.701089044896101 1 0.301244080066681 experiment 0.597821910207798 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17039749 chr17:17039737 nonsynonymous SNV 0.312 2 9 hm5C_associated_SNPs_41271 0 0 1 0 1 MPRIP chr17:17039764 5'GT 17039764 Upstream 28bp
chr21 44152047 44152047 1 + C T UCEC 44152044 + 44152024 44152064 41 AGGGCTGCTACCAGGAAGGCCAGCGCATCCCTCCAGGTAAC AGGGCTGCTACCAGGAAGGCCAGTGCATCCCTCCAGGTAAC < 41bp 1 0.525394800485858 1 0.479937523603439 experiment 0.949210399028285 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDE9A ENSG00000160191 CDS Human protein_coding chr21:44152044 chr21:44152047 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_41278 0 0 0 0 1 PDE9A chr21:44152059 5'GT 44152059 Upstream 13bp
chr2 118582185 118582185 1 + A G UCEC 118582181 + 118582161 118582201 41 GCTCTTTTCTGCCACCCAAACTCGAAAAGTTGAAGACCTGG GCTCTTTTCTGCCACCCAAACTCGGAAAGTTGAAGACCTGG < 41bp 1 0.783477585870173 1 0.263679981231689 experiment 0.433044828259654 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118582181 chr2:118582185 synonymous SNV . 0 25 hm5C_associated_SNPs_41279 0 0 1 0 2 DDX18 chr2:118582145 3'AG 118582145 Downstream 41bp
chr2 118582185 118582185 1 + A G UCEC 118582181 + 118582161 118582201 41 GCTCTTTTCTGCCACCCAAACTCGAAAAGTTGAAGACCTGG GCTCTTTTCTGCCACCCAAACTCGGAAAGTTGAAGACCTGG < 41bp 1 0.783477585870173 1 0.263679981231689 experiment 0.433044828259654 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118582181 chr2:118582185 synonymous SNV . 0 25 hm5C_associated_SNPs_41279 0 0 1 0 2 DDX18 chr2:118582284 5'GT 118582284 Upstream 100bp
chr17 80680737 80680737 1 + T C UCEC 80680754 + 80680734 80680774 41 TGGTGACGTGCTGTGGATACCTCCCCCAGGTGAGTGCACGG TGGCGACGTGCTGTGGATACCTCCCCCAGGTGAGTGCACGG < 41bp 1 0.451246361859002 1 0.781522035598755 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80680754 chr17:80680737 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_41286 0 0 1 0 2 FN3KRP chr17:80680680 3'AG 80680680 Downstream 58bp
chr17 80680737 80680737 1 + T C UCEC 80680754 + 80680734 80680774 41 TGGTGACGTGCTGTGGATACCTCCCCCAGGTGAGTGCACGG TGGCGACGTGCTGTGGATACCTCCCCCAGGTGAGTGCACGG < 41bp 1 0.451246361859002 1 0.781522035598755 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80680754 chr17:80680737 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_41286 0 0 1 0 2 FN3KRP chr17:80680762 5'GT 80680762 Upstream 26bp
chr6 139487483 139487483 1 + G A UCEC 139487463 + 139487443 139487483 41 GATCTGCAGCTTCGGTAGGCCGGTGGACCTGGAGAAGGACG GATCTGCAGCTTCGGTAGGCCGGTGGACCTGGAGAAGGACA < 41bp 1 0.543336704769794 1 0.482868522405624 experiment 0.913326590460411 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECA ENSG00000112406 CDS Human protein_coding chr6:139487463 chr6:139487483 nonsynonymous SNV 0.996 3 41 hm5C_associated_SNPs_41289 0 0 1 0 1 HECA chr6:139487421 3'AG 139487421 Downstream 63bp
chr2 105959565 105959565 1 + A G UCEC 105959573 + 105959553 105959593 41 AACAGAACCATGACTTAACGCATAGGAAAAGTCCTTCAGGC AACAGAACCATGGCTTAACGCATAGGAAAAGTCCTTCAGGC < 41bp 1 0.552239191623012 1 0.709652364253998 experiment 0.895521616753977 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C2orf49 ENSG00000135974 CDS Human protein_coding chr2:105959573 chr2:105959565 nonsynonymous SNV 1.000 0 13 hm5C_associated_SNPs_41290 0 0 1 0 1 C2orf49 chr2:105959558 3'AG 105959558 Downstream 8bp
chr2 200824532 200824532 1 + C T UCEC 200824514 + 200824494 200824534 41 AGAAAAGGTTACTTCACTACCTGACAACCATAAAAATGCCC AGAAAAGGTTACTTCACTACCTGACAACCATAAAAATGTCC < 41bp 1 0.181702443748579 1 0.129139274358749 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200824514 chr2:200824532 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_41291 0 0 1 0 2 MAIP1 chr2:200824477 3'AG 200824477 Downstream 56bp
chr2 200824532 200824532 1 + C T UCEC 200824514 + 200824494 200824534 41 AGAAAAGGTTACTTCACTACCTGACAACCATAAAAATGCCC AGAAAAGGTTACTTCACTACCTGACAACCATAAAAATGTCC < 41bp 1 0.181702443748579 1 0.129139274358749 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200824514 chr2:200824532 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_41291 0 0 1 0 2 MAIP1 chr2:200824603 5'GT 200824603 Upstream 72bp
chr8 1806227 1806227 1 + C T UCEC 1806226 + 1806206 1806246 41 CCAGAAGCGGACAGACAGGCCCCATCCGCCCCTGAGACAGG CCAGAAGCGGACAGACAGGCCTCATCCGCCCCTGAGACAGG < 41bp 1 0.247111093727706 1 0.17174556851387 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1806226 chr8:1806227 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_41292 0 0 1 0 1 ARHGEF10 chr8:1806281 5'GT 1806281 Upstream 55bp
chrX 41089023 41089023 1 + T C UCEC 41089020 + 41089000 41089040 41 CTTGCAAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAA CTTGCAAAAGCTTGTGAACTCTGCCCAGAGGAGGTAAAAAA < 41bp 1 0.214906025332107 1 0.250676155090332 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089020 chrX:41089023 synonymous SNV . 0 24 hm5C_associated_SNPs_41293 0 0 1 0 2 USP9X chrX:41089032 5'GT 41089032 Upstream 10bp
chrX 41089023 41089023 1 + T C UCEC 41089020 + 41089000 41089040 41 CTTGCAAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAA CTTGCAAAAGCTTGTGAACTCTGCCCAGAGGAGGTAAAAAA < 41bp 1 0.214906025332107 1 0.250676155090332 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089020 chrX:41089023 synonymous SNV . 0 24 hm5C_associated_SNPs_41293 0 0 1 0 2 USP9X chrX:41089080 5'GT 41089080 Upstream 58bp
chrX 41089023 41089023 1 + T C UCEC 41089025 + 41089005 41089045 41 AAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAAAGCCA AAAAGCTTGTGAACTCTGCCCAGAGGAGGTAAAAAAAGCCA < 41bp 1 0.216120056819434 1 0.667450547218323 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089025 chrX:41089023 synonymous SNV . 0 19 hm5C_associated_SNPs_41294 0 0 1 0 2 USP9X chrX:41089032 5'GT 41089032 Upstream 10bp
chrX 41089023 41089023 1 + T C UCEC 41089025 + 41089005 41089045 41 AAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAAAGCCA AAAAGCTTGTGAACTCTGCCCAGAGGAGGTAAAAAAAGCCA < 41bp 1 0.216120056819434 1 0.667450547218323 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089025 chrX:41089023 synonymous SNV . 0 19 hm5C_associated_SNPs_41294 0 0 1 0 2 USP9X chrX:41089080 5'GT 41089080 Upstream 58bp
chrX 41089023 41089023 1 + T C UCEC 41089043 + 41089023 41089063 41 TCCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAG CCCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAG < 41bp 1 0.051657044568292 1 0.201132655143738 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089043 chrX:41089023 synonymous SNV . 0 1 hm5C_associated_SNPs_41295 0 0 1 0 2 USP9X chrX:41089032 5'GT 41089032 Upstream 10bp
chrX 41089023 41089023 1 + T C UCEC 41089043 + 41089023 41089063 41 TCCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAG CCCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAG < 41bp 1 0.051657044568292 1 0.201132655143738 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089043 chrX:41089023 synonymous SNV . 0 1 hm5C_associated_SNPs_41295 0 0 1 0 2 USP9X chrX:41089080 5'GT 41089080 Upstream 58bp
chr5 149754347 149754347 1 + G A UCEC 149754335 + 149754315 149754355 41 GAGGAGGACTCGCAGAGCAGCAGCGAGGAATCGGACAGTGA GAGGAGGACTCGCAGAGCAGCAGCGAGGAATCAGACAGTGA < 41bp 1 0.526136720380274 1 0.416235089302063 experiment 0.947726559239451 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754335 chr5:149754347 synonymous SNV . 0 33 hm5C_associated_SNPs_41296 0 0 1 0 1 TCOF1 chr5:149754374 5'GT 149754374 Upstream 28bp
chr5 142264926 142264926 1 + A G UCEC 142264910 + 142264890 142264930 41 ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTT ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGGATTT < 41bp 1 0.121049583421354 1 0.367004811763763 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142264910 chr5:142264926 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_41298 0 0 1 0 2 ARHGAP26 chr5:142264863 3'AG 142264863 Downstream 64bp
chr5 142264926 142264926 1 + A G UCEC 142264910 + 142264890 142264930 41 ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTT ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGGATTT < 41bp 1 0.121049583421354 1 0.367004811763763 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142264910 chr5:142264926 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_41298 0 0 1 0 2 ARHGAP26 chr5:142264964 5'GT 142264964 Upstream 39bp
chr15 66777517 66777517 1 + A C UCEC 66777521 + 66777501 66777541 41 GCCAAGGACCCCCGGGAGGCCCCTTAGCTGTGAGTAGCCTG GCCAAGGACCCCCGGGCGGCCCCTTAGCTGTGAGTAGCCTG < 41bp 1 0.148872945229317 1 0.0901764631271362 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP2K1 ENSG00000169032 CDS Human protein_coding chr15:66777521 chr15:66777517 synonymous SNV . 0 17 hm5C_associated_SNPs_41299 0 0 1 0 1 MAP2K1 chr15:66777529 5'GT 66777529 Upstream 13bp
chr1 78399026 78399026 1 + G A UCEC 78399025 + 78399005 78399045 41 CTCTCAAGAATTTCTTACACCGGGAAAACTGGAAATTAATT CTCTCAAGAATTTCTTACACCAGGAAAACTGGAAATTAATT < 41bp 1 0.619557433159357 1 0.698949098587036 experiment 0.760885133681285 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NEXN ENSG00000162614 CDS Human protein_coding chr1:78399025 chr1:78399026 synonymous SNV . 0 22 hm5C_associated_SNPs_41300 0 0 0 0 1 NEXN chr1:78398967 3'AG 78398967 Downstream 60bp
chr17 60769593 60769593 1 + G A UCEC 60769607 + 60769587 60769627 41 GGCAGCGCTTCCAGAGAACCCAGCGGCCCTGGTGGTGGTGC GGCAGCACTTCCAGAGAACCCAGCGGCCCTGGTGGTGGTGC < 41bp 1 0.679598241752021 1 0.750279426574707 experiment 0.640803516495957 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60769607 chr17:60769593 synonymous SNV . 0 7 hm5C_associated_SNPs_41301 0 0 0 0 1 MRC2 chr17:60769592 3'AG 60769592 Downstream 2bp
chrX 129535956 129535956 1 + G A UCEC 129535973 + 129535953 129535993 41 TGCGCTGCCTTTCCCGGGCGCTGATTCCTGAGTGCTGAGCG TGCACTGCCTTTCCCGGGCGCTGATTCCTGAGTGCTGAGCG < 41bp 1 0.438686195820725 1 0.0304941833019257 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBMX2 ENSG00000134597 UTR5 Human protein_coding chrX:129535973 chrX:129535956 . . 0 4 hm5C_associated_SNPs_41302 0 0 1 0 1 RBMX2 chrX:129536011 5'GT 129536011 Upstream 56bp
chr19 14512316 14512316 1 + G T UCEC 14512320 + 14512300 14512340 41 CTTGAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA CTTGAAGATATCATGATGATCCTGGCCAAGAGCCTGCCTAA < 41bp 1 0.340390762032707 1 0.0581580102443695 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14512320 chr19:14512316 nonsynonymous SNV 0.001 3 17 hm5C_associated_SNPs_41303 0 0 1 0 1 ADGRE5 chr19:14512375 5'GT 14512375 Upstream 60bp
chr3 13672274 13672274 1 + G A UCEC 13672281 + 13672261 13672301 41 CAGTGCTACTGCCGCCAGGGCTACCAGCTGGCTGAGGATGG CAGTGCTACTGCCACCAGGGCTACCAGCTGGCTGAGGATGG < 41bp 1 0.0770211578181478 1 0.0463477373123169 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13672281 chr3:13672274 nonsynonymous SNV 0.987 5 14 hm5C_associated_SNPs_41307 0 0 0 0 2 FBLN2 chr3:13672199 3'AG 13672199 Downstream 76bp
chr3 13672274 13672274 1 + G A UCEC 13672281 + 13672261 13672301 41 CAGTGCTACTGCCGCCAGGGCTACCAGCTGGCTGAGGATGG CAGTGCTACTGCCACCAGGGCTACCAGCTGGCTGAGGATGG < 41bp 1 0.0770211578181478 1 0.0463477373123169 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13672281 chr3:13672274 nonsynonymous SNV 0.987 5 14 hm5C_associated_SNPs_41307 0 0 0 0 2 FBLN2 chr3:13672315 5'GT 13672315 Upstream 42bp
chr3 13672274 13672274 1 + G A UCEC 13672285 + 13672265 13672305 41 GCTACTGCCGCCAGGGCTACCAGCTGGCTGAGGATGGGCAC GCTACTGCCACCAGGGCTACCAGCTGGCTGAGGATGGGCAC < 41bp 1 0.562670352722818 1 0.461203932762146 experiment 0.874659294554365 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13672285 chr3:13672274 nonsynonymous SNV 0.987 5 10 hm5C_associated_SNPs_41308 0 0 0 0 2 FBLN2 chr3:13672199 3'AG 13672199 Downstream 76bp
chr3 13672274 13672274 1 + G A UCEC 13672285 + 13672265 13672305 41 GCTACTGCCGCCAGGGCTACCAGCTGGCTGAGGATGGGCAC GCTACTGCCACCAGGGCTACCAGCTGGCTGAGGATGGGCAC < 41bp 1 0.562670352722818 1 0.461203932762146 experiment 0.874659294554365 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13672285 chr3:13672274 nonsynonymous SNV 0.987 5 10 hm5C_associated_SNPs_41308 0 0 0 0 2 FBLN2 chr3:13672315 5'GT 13672315 Upstream 42bp
chr17 30293214 30293214 1 + T C UCEC 30293195 + 30293175 30293215 41 TCATTTGCAGCTTACGTTTACTGGTTTCTTCCACAAAAATG TCATTTGCAGCTTACGTTTACTGGTTTCTTCCACAAAAACG < 41bp 1 0.501891665237136 1 0.189388364553452 experiment 0.996216669525727 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SUZ12 ENSG00000178691 CDS Human protein_coding chr17:30293195 chr17:30293214 synonymous SNV . 0 40 hm5C_associated_SNPs_41309 0 0 1 0 2 SUZ12 chr17:30293166 3'AG 30293166 Downstream 49bp
chr17 30293214 30293214 1 + T C UCEC 30293195 + 30293175 30293215 41 TCATTTGCAGCTTACGTTTACTGGTTTCTTCCACAAAAATG TCATTTGCAGCTTACGTTTACTGGTTTCTTCCACAAAAACG < 41bp 1 0.501891665237136 1 0.189388364553452 experiment 0.996216669525727 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SUZ12 ENSG00000178691 CDS Human protein_coding chr17:30293195 chr17:30293214 synonymous SNV . 0 40 hm5C_associated_SNPs_41309 0 0 1 0 2 SUZ12 chr17:30293215 5'GT 30293215 Upstream 2bp
chr19 50339133 50339133 1 + A G UCEC 50339146 + 50339126 50339166 41 CTCCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAAC CTCCTGGGCCCATCCTTCGGCCCCAGAACCCTGGGGCCAAC < 41bp 1 0.434045634102374 1 0.0663125514984131 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339146 chr19:50339133 synonymous SNV . 0 8 hm5C_associated_SNPs_41311 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 70bp
chr19 50339133 50339133 1 + A G UCEC 50339147 + 50339127 50339167 41 TCCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACC TCCTGGGCCCATCCTTCGGCCCCAGAACCCTGGGGCCAACC < 41bp 1 0.139019374416659 1 0.0320164263248444 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339147 chr19:50339133 synonymous SNV . 0 7 hm5C_associated_SNPs_41312 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 70bp
chr19 50339133 50339133 1 + A G UCEC 50339148 + 50339128 50339168 41 CCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACCC CCTGGGCCCATCCTTCGGCCCCAGAACCCTGGGGCCAACCC < 41bp 1 0.418497596157918 1 0.0585717856884003 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339148 chr19:50339133 synonymous SNV . 0 6 hm5C_associated_SNPs_41313 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 70bp
chr19 50339133 50339133 1 + A G UCEC 50339149 + 50339129 50339169 41 CTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACCCT CTGGGCCCATCCTTCGGCCCCAGAACCCTGGGGCCAACCCT < 41bp 1 0.455824702025484 1 0.0963809490203857 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339149 chr19:50339133 synonymous SNV . 0 5 hm5C_associated_SNPs_41314 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 70bp
chr8 56866444 56866444 1 + C T UCEC 56866453 + 56866433 56866473 41 TTAGTCCCAAGCCACAGAAGCCATGGGATAAAGATGCCTGG TTAGTCCCAAGTCACAGAAGCCATGGGATAAAGATGCCTGG < 41bp 1 0.0966223545187516 1 0.379556357860565 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56866453 chr8:56866444 nonsynonymous SNV 0.983 2 12 hm5C_associated_SNPs_41315 0 0 1 0 2 LYN chr8:56866391 3'AG 56866391 Downstream 54bp
chr8 56866444 56866444 1 + C T UCEC 56866453 + 56866433 56866473 41 TTAGTCCCAAGCCACAGAAGCCATGGGATAAAGATGCCTGG TTAGTCCCAAGTCACAGAAGCCATGGGATAAAGATGCCTGG < 41bp 1 0.0966223545187516 1 0.379556357860565 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56866453 chr8:56866444 nonsynonymous SNV 0.983 2 12 hm5C_associated_SNPs_41315 0 0 1 0 2 LYN chr8:56866543 5'GT 56866543 Upstream 100bp
chr22 42032182 42032182 1 + C A UCEC 42032200 + 42032180 42032220 41 TTCTATGGTACCGAGAAAGACAAAAATTCAGTGAATTTTAA TTATATGGTACCGAGAAAGACAAAAATTCAGTGAATTTTAA < 41bp 1 0.496292805420167 1 0.343502163887024 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42032200 chr22:42032182 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_41317 0 0 1 0 1 XRCC6 chr22:42032255 5'GT 42032255 Upstream 74bp
chr11 134014868 134014868 1 + A G UCEC 134014879 + 134014859 134014899 41 TTTCCACTTAAACTCTGAAACAGGCACTTTGGTAAGATCTC TTTCCACTTGAACTCTGAAACAGGCACTTTGGTAAGATCTC < 41bp 1 0.415468779690164 1 0.712385892868042 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control JAM3 ENSG00000166086 CDS Human protein_coding chr11:134014879 chr11:134014868 synonymous SNV . 0 10 hm5C_associated_SNPs_41322 0 0 1 0 1 JAM3 chr11:134014889 5'GT 134014889 Upstream 22bp
chr4 15589548 15589548 1 + C A UCEC 15589537 + 15589517 15589557 41 AAGGCCTGGCTGTTGATGGGCAATGCTATTCCTGAGGTAAG AAGGCCTGGCTGTTGATGGGCAATGCTATTCATGAGGTAAG < 41bp 1 0.124567773127149 1 0.127511203289032 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CC2D2A ENSG00000048342 CDS Human protein_coding chr4:15589537 chr4:15589548 nonsynonymous SNV 0.997 4 32 hm5C_associated_SNPs_41323 0 0 0 2 1 CC2D2A chr4:15589552 5'GT 15589552 Upstream 5bp
chr2 241514992 241514992 1 + C T UCEC 241514997 + 241514977 241515017 41 TCCTGAGCTTCTTCCCGGAGCTGAAGGAGCAGAGCGTGGAC TCCTGAGCTTCTTCCTGGAGCTGAAGGAGCAGAGCGTGGAC < 41bp 1 0.60996772462541 1 0.271427154541016 experiment 0.78006455074918 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241514997 chr2:241514992 nonsynonymous SNV 0.997 4 16 hm5C_associated_SNPs_41324 0 0 1 0 1 RNPEPL1 chr2:241515027 5'GT 241515027 Upstream 36bp
chr6 18213975 18213975 1 + G A UCEC 18213957 + 18213937 18213977 41 TGACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAG TGACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCAAG < 41bp 1 0.415325964297911 1 0.201159179210663 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213957 chr6:18213975 nonsynonymous SNV 0.962 4 39 hm5C_associated_SNPs_41326 0 0 1 0 2 KDM1B chr6:18213887 3'AG 18213887 Downstream 89bp
chr6 18213975 18213975 1 + G A UCEC 18213957 + 18213937 18213977 41 TGACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAG TGACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCAAG < 41bp 1 0.415325964297911 1 0.201159179210663 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213957 chr6:18213975 nonsynonymous SNV 0.962 4 39 hm5C_associated_SNPs_41326 0 0 1 0 2 KDM1B chr6:18214012 5'GT 18214012 Upstream 38bp
chr6 18213975 18213975 1 + G A UCEC 18213959 + 18213939 18213979 41 ACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAGGG ACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCAAGGG < 41bp 1 0.468719448527127 1 0.464764595031738 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213959 chr6:18213975 nonsynonymous SNV 0.962 4 37 hm5C_associated_SNPs_41327 0 0 1 0 2 KDM1B chr6:18213887 3'AG 18213887 Downstream 89bp
chr6 18213975 18213975 1 + G A UCEC 18213959 + 18213939 18213979 41 ACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAGGG ACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCAAGGG < 41bp 1 0.468719448527127 1 0.464764595031738 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213959 chr6:18213975 nonsynonymous SNV 0.962 4 37 hm5C_associated_SNPs_41327 0 0 1 0 2 KDM1B chr6:18214012 5'GT 18214012 Upstream 38bp
chr19 13010538 13010538 1 + G T UCEC 13010519 + 13010499 13010539 41 ATTTCCCTTCTGAAGTCGTTCAGATGTGTTCCTTAAAAAGA ATTTCCCTTCTGAAGTCGTTCAGATGTGTTCCTTAAAAATA < 41bp 1 0.37374012565064 1 0.246356666088104 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13010519 chr19:13010538 nonsynonymous SNV . 0 40 hm5C_associated_SNPs_41328 0 0 1 0 1 GCDH chr19:13010514 3'AG 13010514 Downstream 25bp
chr17 48155424 48155424 1 + C T UCEC 48155439 + 48155419 48155459 41 CTCATCGCCTTTGAGGTCATCGGGGTGACCCTGCACACAAG CTCATTGCCTTTGAGGTCATCGGGGTGACCCTGCACACAAG < 41bp 1 0.797962647930227 1 0.9577556848526 experiment 0.404074704139546 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48155439 chr17:48155424 synonymous SNV . 0 6 hm5C_associated_SNPs_41329 0 0 0 0 2 ITGA3 chr17:48155410 3'AG 48155410 Downstream 15bp
chr17 48155424 48155424 1 + C T UCEC 48155439 + 48155419 48155459 41 CTCATCGCCTTTGAGGTCATCGGGGTGACCCTGCACACAAG CTCATTGCCTTTGAGGTCATCGGGGTGACCCTGCACACAAG < 41bp 1 0.797962647930227 1 0.9577556848526 experiment 0.404074704139546 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48155439 chr17:48155424 synonymous SNV . 0 6 hm5C_associated_SNPs_41329 0 0 0 0 2 ITGA3 chr17:48155489 5'GT 48155489 Upstream 66bp
chr19 36370321 36370321 1 + G A UCEC 36370340 + 36370320 36370360 41 CGCTTCCTGGAGGAACGACCCTGACCCGGCCCCCTTCACCC CACTTCCTGGAGGAACGACCCTGACCCGGCCCCCTTCACCC < 41bp 1 0.411141401091536 1 0.0544670820236206 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APLP1 ENSG00000105290 CDS Human protein_coding chr19:36370340 chr19:36370321 nonsynonymous SNV 1.000 5 2 hm5C_associated_SNPs_41330 0 0 1 0 1 APLP1 chr19:36370245 3'AG 36370245 Downstream 77bp
chr1 224553684 224553684 1 + A G UCEC 224553676 + 224553656 224553696 41 CTTCTCAACTTACCTGTTGCCACTTGGAATATATATCGGTG CTTCTCAACTTACCTGTTGCCACTTGGAGTATATATCGGTG < 41bp 1 0.30708328000775 1 0.347925245761871 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNIH4 ENSG00000143771 CDS Human protein_coding chr1:224553676 chr1:224553684 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_41331 0 0 1 0 1 CNIH4 chr1:224553693 5'GT 224553693 Upstream 10bp
chr7 142459695 142459695 1 + G A UCEC 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAACCAAG < 41bp 1 0.502815563172036 1 0.31520938873291 experiment 0.994368873655928 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459695 nonsynonymous SNV 0.055 1 36 hm5C_associated_SNPs_41332 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 71bp
chr7 142459695 142459695 1 + G A UCEC 142459685 + 142459665 142459705 41 CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT CTGGAGGGGAATGAGCAGTTCATCAATGCAACCAAGATCAT < 41bp 1 0.689708601770046 1 0.0453372001647949 experiment 0.620582796459908 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459685 chr7:142459695 nonsynonymous SNV 0.055 1 31 hm5C_associated_SNPs_41333 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 71bp
chr7 142459695 142459695 1 + G A UCEC 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAGGGGAATGAGCAGTTCATCAATGCAACCAAGATCATCCG < 41bp 1 0.6383356520338 1 0.389768987894058 experiment 0.723328695932399 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459695 nonsynonymous SNV 0.055 1 28 hm5C_associated_SNPs_41334 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 71bp
chr7 142459695 142459695 1 + G A UCEC 142459693 + 142459673 142459713 41 GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC GAATGAGCAGTTCATCAATGCAACCAAGATCATCCGCCACC < 41bp 1 0.440554136058219 1 0.0219292938709259 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459693 chr7:142459695 nonsynonymous SNV 0.055 1 23 hm5C_associated_SNPs_41335 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 71bp
chr7 142459695 142459695 1 + G A UCEC 142459696 + 142459676 142459716 41 TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC TGAGCAGTTCATCAATGCAACCAAGATCATCCGCCACCCCC < 41bp 1 0.395867101683263 1 0.326244652271271 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459696 chr7:142459695 nonsynonymous SNV 0.055 1 20 hm5C_associated_SNPs_41336 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 71bp
chr7 142459695 142459695 1 + G A UCEC 142459703 + 142459683 142459723 41 TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGA TTCATCAATGCAACCAAGATCATCCGCCACCCCCAATACGA < 41bp 1 0.270421810240793 1 0.0917937457561493 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459703 chr7:142459695 nonsynonymous SNV 0.055 1 13 hm5C_associated_SNPs_41337 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 71bp
chr7 142459695 142459695 1 + G A UCEC 142459706 + 142459686 142459726 41 ATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAG ATCAATGCAACCAAGATCATCCGCCACCCCCAATACGACAG < 41bp 1 0.272409948478442 1 0.414751648902893 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459706 chr7:142459695 nonsynonymous SNV 0.055 1 10 hm5C_associated_SNPs_41338 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 71bp
chr7 142459695 142459695 1 + G A UCEC 142459707 + 142459687 142459727 41 TCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGG TCAATGCAACCAAGATCATCCGCCACCCCCAATACGACAGG < 41bp 1 0.737153101176703 1 0.243724226951599 experiment 0.525693797646593 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459707 chr7:142459695 nonsynonymous SNV 0.055 1 9 hm5C_associated_SNPs_41339 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 71bp
chr7 142459695 142459695 1 + G A UCEC 142459709 + 142459689 142459729 41 AATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA AATGCAACCAAGATCATCCGCCACCCCCAATACGACAGGAA < 41bp 1 0.118610936648808 1 0.075216144323349 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459709 chr7:142459695 nonsynonymous SNV 0.055 1 7 hm5C_associated_SNPs_41340 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 71bp
chr7 142459695 142459695 1 + G A UCEC 142459710 + 142459690 142459730 41 ATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG ATGCAACCAAGATCATCCGCCACCCCCAATACGACAGGAAG < 41bp 1 0.185508965015172 1 0.181185811758041 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459710 chr7:142459695 nonsynonymous SNV 0.055 1 6 hm5C_associated_SNPs_41341 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 71bp
chr7 142459695 142459695 1 + G A UCEC 142459712 + 142459692 142459732 41 GCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC GCAACCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC < 41bp 1 0.151321589351007 1 0.109357297420502 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459712 chr7:142459695 nonsynonymous SNV 0.055 1 4 hm5C_associated_SNPs_41342 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 71bp
chr7 142459695 142459695 1 + G A UCEC 142459713 + 142459693 142459733 41 CAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT CAACCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT < 41bp 1 0.482397061611595 1 0.538319647312164 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459713 chr7:142459695 nonsynonymous SNV 0.055 1 3 hm5C_associated_SNPs_41343 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 71bp
chr7 142459695 142459695 1 + G A UCEC 142459714 + 142459694 142459734 41 AGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC AACCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC < 41bp 1 0.473689232466566 1 0.169595569372177 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459714 chr7:142459695 nonsynonymous SNV 0.055 1 2 hm5C_associated_SNPs_41344 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 71bp
chr7 142459695 142459695 1 + G A UCEC 142459715 + 142459695 142459735 41 GCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCT ACCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCT < 41bp 1 0.242414796473632 1 0.163082927465439 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459715 chr7:142459695 nonsynonymous SNV 0.055 1 1 hm5C_associated_SNPs_41345 0 0 0 0 1 PRSS1 chr7:142459625 3'AG 142459625 Downstream 71bp
chr3 41266527 41266527 1 + G A UCEC 41266530 + 41266510 41266550 41 TTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGC TTAGATGAGGGCATGCAAATCCCATCTACACAGTTTGATGC < 41bp 1 0.378067541350482 1 0.25400584936142 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41266530 chr3:41266527 synonymous SNV . 0 18 hm5C_associated_SNPs_41347 0 0 1 0 1 CTNNB1 chr3:41266445 3'AG 41266445 Downstream 83bp
chr7 6057468 6057468 1 + C T UCEC 6057450 + 6057430 6057470 41 TTGGTCTTTCCCCAGGATTACGGGGCGCTGAAAGACATCGT TTGGTCTTTCCCCAGGATTACGGGGCGCTGAAAGACATTGT < 41bp 1 0.783805805082446 1 0.796723008155823 experiment 0.432388389835108 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6057450 chr7:6057468 synonymous SNV . 0 39 hm5C_associated_SNPs_41348 0 0 1 0 1 AIMP2 chr7:6057445 3'AG 6057445 Downstream 24bp
chr3 183855521 183855521 1 + G A UCEC 183855522 + 183855502 183855542 41 GATGCCAAGGCTTTGGTGCGCTCTGACTTTCTTCTGGTGTA GATGCCAAGGCTTTGGTGCACTCTGACTTTCTTCTGGTGTA < 41bp 1 0.445236541271422 1 0.086987316608429 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183855522 chr3:183855521 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_41349 0 0 1 0 1 EIF2B5 chr3:183855593 5'GT 183855593 Upstream 73bp
chr1 231114969 231114969 1 + G A UCEC 231114974 + 231114954 231114994 41 ATCGAATGCAACCAGGAGGCCAAAGAGTTGTACCGAGACTA ATCGAATGCAACCAGAAGGCCAAAGAGTTGTACCGAGACTA < 41bp 1 0.616214226451536 1 0.26904571056366 experiment 0.767571547096928 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARV1 ENSG00000173409 CDS Human protein_coding chr1:231114974 chr1:231114969 nonsynonymous SNV 0.996 1 16 hm5C_associated_SNPs_41350 0 0 1 0 1 ARV1 chr1:231115025 5'GT 231115025 Upstream 57bp
chr6 43188297 43188297 1 + T C UCEC 43188295 + 43188275 43188315 41 CCCGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC CCCGCCCAGCCCACCGGAGCCTCCATTCGTGCCATCGTCTC < 41bp 1 0.778047293209333 1 0.917338967323303 experiment 0.443905413581335 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188295 chr6:43188297 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_41354 0 0 0 0 1 CUL9 chr6:43188337 5'GT 43188337 Upstream 41bp
chr2 24888646 24888646 1 + A C UCEC 24888633 + 24888613 24888653 41 AACAGCACGGAAAAGAGGCGCAGGGAGCAAGAAAATAAATA AACAGCACGGAAAAGAGGCGCAGGGAGCAAGAACATAAATA < 41bp 1 0.358626329072736 1 0.674253344535828 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24888633 chr2:24888646 nonsynonymous SNV 1.000 5 34 hm5C_associated_SNPs_41356 0 0 1 0 1 NCOA1 chr2:24888618 3'AG 24888618 Downstream 29bp
chrX 110954923 110954923 1 + G T UCEC 110954916 + 110954896 110954936 41 TTTGAAGTATGTGGAGGGATCTTTTGAGAAATACCTGGAAC TTTGAAGTATGTGGAGGGATCTTTTGATAAATACCTGGAAC < 41bp 1 0.152410312619914 1 0.0985323488712311 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG13 ENSG00000101901 CDS Human protein_coding chrX:110954916 chrX:110954923 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_41357 0 0 1 0 1 ALG13 chrX:110954903 3'AG 110954903 Downstream 21bp
chr7 5336811 5336811 1 + C T UCEC 5336820 + 5336800 5336840 41 CACGACGTTGTCGCCGGGGACGTCCACTTCGTAAGTGCGCA CACGACGTTGTTGCCGGGGACGTCCACTTCGTAAGTGCGCA < 41bp 1 0.0652008706374895 1 0.136228829622269 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5336820 chr7:5336811 synonymous SNV . 0 12 hm5C_associated_SNPs_41359 0 0 0 0 1 SLC29A4 chr7:5336829 5'GT 5336829 Upstream 19bp
chr5 179151724 179151724 1 + G T UCEC 179151704 + 179151684 179151724 41 GAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAGGAAG GAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAGGAAT < 41bp 1 0.50220718642122 1 0.699438214302063 experiment 0.99558562715756 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151704 chr5:179151724 stopgain 0.998 0 41 hm5C_associated_SNPs_41360 0 0 1 0 2 CANX chr5:179151658 3'AG 179151658 Downstream 67bp
chr5 179151724 179151724 1 + G T UCEC 179151704 + 179151684 179151724 41 GAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAGGAAG GAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAGGAAT < 41bp 1 0.50220718642122 1 0.699438214302063 experiment 0.99558562715756 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151704 chr5:179151724 stopgain 0.998 0 41 hm5C_associated_SNPs_41360 0 0 1 0 2 CANX chr5:179151784 5'GT 179151784 Upstream 61bp
chr1 155582020 155582020 1 + C T UCEC 155582039 + 155582019 155582059 41 GCGCGAAGGCGGCAGAGCTGCTACAAGATGAATATTCAGGG GTGCGAAGGCGGCAGAGCTGCTACAAGATGAATATTCAGGG < 41bp 1 0.770208498845093 1 0.296222805976868 experiment 0.459583002309815 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582039 chr1:155582020 synonymous SNV . 0 2 hm5C_associated_SNPs_41361 0 0 0 0 2 MSTO1 chr1:155581973 3'AG 155581973 Downstream 48bp
chr1 155582020 155582020 1 + C T UCEC 155582039 + 155582019 155582059 41 GCGCGAAGGCGGCAGAGCTGCTACAAGATGAATATTCAGGG GTGCGAAGGCGGCAGAGCTGCTACAAGATGAATATTCAGGG < 41bp 1 0.770208498845093 1 0.296222805976868 experiment 0.459583002309815 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582039 chr1:155582020 synonymous SNV . 0 2 hm5C_associated_SNPs_41361 0 0 0 0 2 MSTO1 chr1:155582107 5'GT 155582107 Upstream 88bp
chr13 77661714 77661714 1 - G T UCEC 77661728 - 77661708 77661748 41 TAATGTCATCCAAACCACTTCTCTCCATGATATTCTGTGGC TAATGTCATCCAAACCACTTCTCTCCATGATATTATGTGGC < 41bp 1 0.0247054973703248 1 0.519282281398773 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MYCBP2 ENSG00000005810 CDS Human protein_coding chr13:77661728 chr13:77661714 nonsynonymous SNV 0.997 3 35 hm5C_associated_SNPs_41369 0 0 1 0 2 MYCBP2 chr13:77661619 5'GT 77661619 Upstream 96bp
chr13 77661714 77661714 1 - G T UCEC 77661728 - 77661708 77661748 41 TAATGTCATCCAAACCACTTCTCTCCATGATATTCTGTGGC TAATGTCATCCAAACCACTTCTCTCCATGATATTATGTGGC < 41bp 1 0.0247054973703248 1 0.519282281398773 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MYCBP2 ENSG00000005810 CDS Human protein_coding chr13:77661728 chr13:77661714 nonsynonymous SNV 0.997 3 35 hm5C_associated_SNPs_41369 0 0 1 0 2 MYCBP2 chr13:77661768 3'AG 77661768 Downstream 55bp
chr17 38152550 38152550 1 + C T UCEC 38152535 + 38152515 38152555 41 ATTCCACCCGAGAGCCCCAGCTAGCCTTCCACCAGCGCATC ATTCCACCCGAGAGCCCCAGCTAGCCTTCCACCAGTGCATC < 41bp 1 0.301626372223051 1 0.250767350196838 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38152535 chr17:38152550 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_41370 0 0 1 1 1 PSMD3 chr17:38152591 5'GT 38152591 Upstream 42bp
chr2 114709399 114709399 1 + G T UCEC 114709379 + 114709359 114709399 41 TTTGAAAAGAACTGTAGATGCCCGGCTGAAATTAAGTGAGG TTTGAAAAGAACTGTAGATGCCCGGCTGAAATTAAGTGAGT < 41bp 1 0.623994821831934 1 0.200646549463272 experiment 0.752010356336133 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTR3 ENSG00000115091 CDS Human protein_coding chr2:114709379 chr2:114709399 stopgain 0.997 1 41 hm5C_associated_SNPs_41371 0 0 1 0 1 ACTR3 chr2:114709422 5'GT 114709422 Upstream 24bp
chr2 114709399 114709399 1 + G T UCEC 114709380 + 114709360 114709400 41 TTGAAAAGAACTGTAGATGCCCGGCTGAAATTAAGTGAGGA TTGAAAAGAACTGTAGATGCCCGGCTGAAATTAAGTGAGTA < 41bp 1 0.349051606833142 1 0.274563610553741 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTR3 ENSG00000115091 CDS Human protein_coding chr2:114709380 chr2:114709399 stopgain 0.997 1 40 hm5C_associated_SNPs_41372 0 0 1 0 1 ACTR3 chr2:114709422 5'GT 114709422 Upstream 24bp
chr2 114709399 114709399 1 + G T UCEC 114709381 + 114709361 114709401 41 TGAAAAGAACTGTAGATGCCCGGCTGAAATTAAGTGAGGAA TGAAAAGAACTGTAGATGCCCGGCTGAAATTAAGTGAGTAA < 41bp 1 0.544791381029743 1 0.396089136600494 experiment 0.910417237940514 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTR3 ENSG00000115091 CDS Human protein_coding chr2:114709381 chr2:114709399 stopgain 0.997 1 39 hm5C_associated_SNPs_41373 0 0 1 0 1 ACTR3 chr2:114709422 5'GT 114709422 Upstream 24bp
chr19 50339177 50339177 1 + G A UCEC 50339162 + 50339142 50339182 41 TCGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCC TCGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCAAAGCC < 41bp 1 0.0155450457367539 1 0.0502949059009552 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339162 chr19:50339177 nonsynonymous SNV 0.992 2 36 hm5C_associated_SNPs_41374 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 26bp
chr19 50339177 50339177 1 + G A UCEC 50339163 + 50339143 50339183 41 CGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCCT CGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCAAAGCCT < 41bp 1 0.100830790574552 1 0.0419811308383942 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339163 chr19:50339177 nonsynonymous SNV 0.992 2 35 hm5C_associated_SNPs_41375 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 26bp
chr10 118306831 118306831 1 + C T UCEC 118306849 + 118306829 118306869 41 CTCGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTAC CTTGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTAC < 41bp 1 0.351988384058207 1 0.053823322057724 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306849 chr10:118306831 synonymous SNV . 0 3 hm5C_associated_SNPs_41376 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 26bp
chr10 118306831 118306831 1 + C T UCEC 118306851 + 118306831 118306871 41 CGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGG TGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGG < 41bp 1 0.703694198361142 1 0.242646723985672 experiment 0.592611603277717 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306851 chr10:118306831 synonymous SNV . 0 1 hm5C_associated_SNPs_41377 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 26bp
chr7 129939218 129939218 1 + T C UCEC 129939222 + 129939202 129939242 41 ATCCCAGGGCTTAGAGTACGCAGTGACAATTGAGGACCTGC ATCCCAGGGCTTAGAGCACGCAGTGACAATTGAGGACCTGC < 41bp 1 0.4969561381467 1 0.208704441785812 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129939222 chr7:129939218 nonsynonymous SNV 0.373 3 17 hm5C_associated_SNPs_41378 0 0 0 0 1 CPA4 chr7:129939244 5'GT 129939244 Upstream 27bp
chr12 109961890 109961890 1 + C T UCEC 109961906 + 109961886 109961926 41 ACTCCGAGTTCTATAAAAACCTCACCTCCATCAAGGTGAGC ACTCTGAGTTCTATAAAAACCTCACCTCCATCAAGGTGAGC < 41bp 1 0.222371315291148 1 0.0417645871639252 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UBE3B ENSG00000151148 CDS Human protein_coding chr12:109961906 chr12:109961890 synonymous SNV . 0 5 hm5C_associated_SNPs_41380 0 0 1 0 1 UBE3B chr12:109961920 5'GT 109961920 Upstream 31bp
chr13 53039495 53039495 1 + A G UCEC 53039491 + 53039471 53039511 41 GATTAAAAATATTCCAGATGCCAAAAAGCTTGTTAAGTATT GATTAAAAATATTCCAGATGCCAAGAAGCTTGTTAAGTATT < 41bp 1 0.131142184461404 1 0.0875152349472046 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CKAP2 ENSG00000136108 CDS Human protein_coding chr13:53039491 chr13:53039495 synonymous SNV . 0 25 hm5C_associated_SNPs_41381 0 0 1 0 1 CKAP2 chr13:53039430 3'AG 53039430 Downstream 66bp
chr1 24022328 24022328 1 + G A UCEC 24022327 + 24022307 24022347 41 TCAGCATCGCAGACAAGAAGCGCAGGACAGGCTGCATTGGG TCAGCATCGCAGACAAGAAGCACAGGACAGGCTGCATTGGG < 41bp 1 0.744035701930963 1 0.520738363265991 experiment 0.511928596138075 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022327 chr1:24022328 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_41382 0 0 1 0 2 RPL11 chr1:24022288 3'AG 24022288 Downstream 41bp
chr1 24022328 24022328 1 + G A UCEC 24022327 + 24022307 24022347 41 TCAGCATCGCAGACAAGAAGCGCAGGACAGGCTGCATTGGG TCAGCATCGCAGACAAGAAGCACAGGACAGGCTGCATTGGG < 41bp 1 0.744035701930963 1 0.520738363265991 experiment 0.511928596138075 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022327 chr1:24022328 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_41382 0 0 1 0 2 RPL11 chr1:24022398 5'GT 24022398 Upstream 71bp
chrX 24483647 24483647 1 + G A UCEC 24483663 + 24483643 24483683 41 CGTCGCCGCTCTCCATCAAACAATTCCTGGACTTCGGTGAG CGTCACCGCTCTCCATCAAACAATTCCTGGACTTCGGTGAG < 41bp 1 0.201533774077105 1 0.249026954174042 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PDK3 ENSG00000067992 CDS Human protein_coding chrX:24483663 chrX:24483647 synonymous SNV . 0 5 hm5C_associated_SNPs_41383 0 0 1 0 1 PDK3 chrX:24483678 5'GT 24483678 Upstream 32bp
chr12 104325333 104325333 1 + T G UCEC 104325338 + 104325318 104325358 41 TGAAGTTGATGTGGATGGTACAGTAGAAGAGGATCTGGGTA TGAAGTTGATGTGGAGGGTACAGTAGAAGAGGATCTGGGTA < 41bp 1 0.686674843958808 1 0.323142290115356 experiment 0.626650312082384 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104325338 chr12:104325333 nonsynonymous SNV 1.000 0 16 hm5C_associated_SNPs_41384 0 0 1 0 2 HSP90B1 chr12:104325390 5'GT 104325390 Upstream 58bp
chr12 104325333 104325333 1 + T G UCEC 104325338 + 104325318 104325358 41 TGAAGTTGATGTGGATGGTACAGTAGAAGAGGATCTGGGTA TGAAGTTGATGTGGAGGGTACAGTAGAAGAGGATCTGGGTA < 41bp 1 0.686674843958808 1 0.323142290115356 experiment 0.626650312082384 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104325338 chr12:104325333 nonsynonymous SNV 1.000 0 16 hm5C_associated_SNPs_41384 0 0 1 0 2 HSP90B1 chr12:104325401 5'GT 104325401 Upstream 69bp
chr3 9775909 9775909 1 + C T UCEC 9775905 + 9775885 9775925 41 TACGAGTGCCCGGTGGAGACCTGCCGAAAGGTCTACAAGAG TACGAGTGCCCGGTGGAGACCTGCTGAAAGGTCTACAAGAG < 41bp 1 0.497066249459025 1 0.315573900938034 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9775905 chr3:9775909 stopgain 1.000 1 25 hm5C_associated_SNPs_41385 0 0 1 0 1 BRPF1 chr3:9775815 3'AG 9775815 Downstream 95bp
chr7 4002354 4002354 1 + C T UCEC 4002345 + 4002325 4002365 41 CCATCTCCATCAGCAGGCTCCAGAATCCTCGATACAAAGTG CCATCTCCATCAGCAGGCTCCAGAATCCTTGATACAAAGTG < 41bp 1 0.183745146685236 1 0.344102650880814 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDK1 ENSG00000146555 CDS Human protein_coding chr7:4002345 chr7:4002354 stopgain 0.581 1 30 hm5C_associated_SNPs_41386 0 0 1 0 1 SDK1 chr7:4002289 3'AG 4002289 Downstream 66bp
chr7 128478852 128478852 1 + C T UCEC 128478838 + 128478818 128478858 41 CCCATCACCCGCAGTCCCTTCCCTGTCCATGTGTCGGAAGG CCCATCACCCGCAGTCCCTTCCCTGTCCATGTGTTGGAAGG < 41bp 1 0.0606853698806197 1 0.0632371604442596 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128478838 chr7:128478852 nonsynonymous SNV 0.946 0 35 hm5C_associated_SNPs_41388 0 0 1 0 1 FLNC chr7:128478857 5'GT 128478857 Upstream 6bp
chr3 9859436 9859436 1 + C A UCEC 9859427 + 9859407 9859447 41 TGCCTGGGGGCTGAGGATGACAAAAAAGCCTTCATAGGTAA TGCCTGGGGGCTGAGGATGACAAAAAAGCATTCATAGGTAA < 41bp 1 0.584932425096586 1 0.504622459411621 experiment 0.830135149806829 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARPC4-TTLL3;TTLL3 ENSG00000214021;ENSG00000250151 CDS Human other chr3:9859427 chr3:9859436 synonymous SNV . 0 30 hm5C_associated_SNPs_41389 0 0 1 0 1 ARPC4-TTLL3;TTLL3 chr3:9859443 5'GT 9859443 Upstream 8bp
chr1 109804153 109804153 1 + C T UCEC 109804156 + 109804136 109804176 41 TTTGCCACAAAGGAGCGCGACGGGTTGCTGTTGTACAATGG TTTGCCACAAAGGAGCGTGACGGGTTGCTGTTGTACAATGG < 41bp 1 0.340505896954964 1 0.231809020042419 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109804156 chr1:109804153 synonymous SNV . 0 18 hm5C_associated_SNPs_41390 0 0 1 0 2 CELSR2 chr1:109804135 3'AG 109804135 Downstream 19bp
chr1 109804153 109804153 1 + C T UCEC 109804156 + 109804136 109804176 41 TTTGCCACAAAGGAGCGCGACGGGTTGCTGTTGTACAATGG TTTGCCACAAAGGAGCGTGACGGGTTGCTGTTGTACAATGG < 41bp 1 0.340505896954964 1 0.231809020042419 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109804156 chr1:109804153 synonymous SNV . 0 18 hm5C_associated_SNPs_41390 0 0 1 0 2 CELSR2 chr1:109804250 5'GT 109804250 Upstream 98bp
chr2 32897401 32897401 1 + C T UCEC 32897396 + 32897376 32897416 41 TAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCGGATCTG TAAAGTTAGCAGATTGTGAACAGTTTCAGATGCCGGATCTG < 41bp 1 0.242891408672043 1 0.0853863954544067 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32897396 chr2:32897401 synonymous SNV . 0 26 hm5C_associated_SNPs_41392 0 0 1 0 2 TTC27 chr2:32897339 3'AG 32897339 Downstream 63bp
chr2 32897401 32897401 1 + C T UCEC 32897396 + 32897376 32897416 41 TAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCGGATCTG TAAAGTTAGCAGATTGTGAACAGTTTCAGATGCCGGATCTG < 41bp 1 0.242891408672043 1 0.0853863954544067 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32897396 chr2:32897401 synonymous SNV . 0 26 hm5C_associated_SNPs_41392 0 0 1 0 2 TTC27 chr2:32897451 5'GT 32897451 Upstream 51bp
chr1 231398518 231398518 1 + G A UCEC 231398517 + 231398497 231398537 41 TTGTTCTGCTGCCTAGTCATCGAAGTTACATTGACTTCCTC TTGTTCTGCTGCCTAGTCATCAAAGTTACATTGACTTCCTC < 41bp 1 0.660198451118007 1 0.875037848949432 experiment 0.679603097763987 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231398517 chr1:231398518 nonsynonymous SNV 0.994 5 22 hm5C_associated_SNPs_41393 0 0 0 0 2 GNPAT chr1:231398469 3'AG 231398469 Downstream 50bp
chr1 231398518 231398518 1 + G A UCEC 231398517 + 231398497 231398537 41 TTGTTCTGCTGCCTAGTCATCGAAGTTACATTGACTTCCTC TTGTTCTGCTGCCTAGTCATCAAAGTTACATTGACTTCCTC < 41bp 1 0.660198451118007 1 0.875037848949432 experiment 0.679603097763987 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231398517 chr1:231398518 nonsynonymous SNV 0.994 5 22 hm5C_associated_SNPs_41393 0 0 0 0 2 GNPAT chr1:231398598 5'GT 231398598 Upstream 81bp
chr12 69966005 69966005 1 + C T UCEC 69966003 + 69965983 69966023 41 ACATCCTTCTGTGGGAAGTGCTCGCCTGCCTTCAGTAGGGG ACATCCTTCTGTGGGAAGTGCTTGCCTGCCTTCAGTAGGGG < 41bp 1 0.208579790843639 1 0.111084789037704 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FRS2 ENSG00000166225 CDS Human protein_coding chr12:69966003 chr12:69966005 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_41394 0 0 1 0 1 FRS2 chr12:69966061 5'GT 69966061 Upstream 57bp
chr19 49102411 49102411 1 + G T UCEC 49102417 + 49102397 49102437 41 TGCGGCGACTGGAAGAACCACTTCACGGTGGCCCAGAGCGA TGCGGCGACTGGAATAACCACTTCACGGTGGCCCAGAGCGA < 41bp 1 0.483927861312305 1 0.361419767141342 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49102417 chr19:49102411 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_41397 0 0 0 0 1 SULT2B1 chr19:49102392 3'AG 49102392 Downstream 20bp
chr3 50131276 50131276 1 + C T UCEC 50131269 + 50131249 50131289 41 GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCAT GAGAGGGAGAGCAAGACCATCATGCTGTGCGGCCTTCCCAT < 41bp 1 0.427609847099502 1 0.363150864839554 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131269 chr3:50131276 nonsynonymous SNV 0.988 4 28 hm5C_associated_SNPs_41398 0 0 1 0 2 RBM5 chr3:50131254 3'AG 50131254 Downstream 23bp
chr3 50131276 50131276 1 + C T UCEC 50131269 + 50131249 50131289 41 GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCAT GAGAGGGAGAGCAAGACCATCATGCTGTGCGGCCTTCCCAT < 41bp 1 0.427609847099502 1 0.363150864839554 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131269 chr3:50131276 nonsynonymous SNV 0.988 4 28 hm5C_associated_SNPs_41398 0 0 1 0 2 RBM5 chr3:50131308 5'GT 50131308 Upstream 33bp
chr2 113315624 113315624 1 + C T UCEC 113315643 + 113315623 113315663 41 ACCTTTTTGCTACTGGGAATCTGCGTTCTAAAACAGGTAAA ATCTTTTTGCTACTGGGAATCTGCGTTCTAAAACAGGTAAA < 41bp 1 0.524870526416117 1 0.768506169319153 experiment 0.950258947167766 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113315643 chr2:113315624 synonymous SNV . 0 2 hm5C_associated_SNPs_41399 0 0 1 0 1 POLR1B chr2:113315658 5'GT 113315658 Upstream 35bp
chr17 4685828 4685828 1 + G A UCEC 4685815 + 4685795 4685835 41 CAGATGCTGCGCTCGGTCTTCTCCTCGGCGTTCGGGGTGCT CAGATGCTGCGCTCGGTCTTCTCCTCGGCGTTCAGGGTGCT < 41bp 1 0.368669892900445 1 0.436198323965073 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TM4SF5 ENSG00000142484 CDS Human protein_coding chr17:4685815 chr17:4685828 nonsynonymous SNV 0.993 3 34 hm5C_associated_SNPs_41400 0 0 1 0 1 TM4SF5 chr17:4685798 3'AG 4685798 Downstream 31bp
chr2 32631582 32631582 1 + G T UCEC 32631577 + 32631557 32631597 41 TTGATTTAAGTGATGATTTACTGGAGGATTCAGACAGTGAA TTGATTTAAGTGATGATTTACTGGATGATTCAGACAGTGAA < 41bp 1 0.304471355604928 1 0.678566098213196 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32631577 chr2:32631582 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_41401 0 0 1 0 2 BIRC6 chr2:32631567 3'AG 32631567 Downstream 16bp
chr2 32631582 32631582 1 + G T UCEC 32631577 + 32631557 32631597 41 TTGATTTAAGTGATGATTTACTGGAGGATTCAGACAGTGAA TTGATTTAAGTGATGATTTACTGGATGATTCAGACAGTGAA < 41bp 1 0.304471355604928 1 0.678566098213196 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32631577 chr2:32631582 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_41401 0 0 1 0 2 BIRC6 chr2:32631625 5'GT 32631625 Upstream 44bp
chr11 35201856 35201856 1 + G A UCEC 35201875 + 35201855 35201895 41 CGGATCCACCCCAACTCCATCTGTGCAGCAAACAACACAGG CAGATCCACCCCAACTCCATCTGTGCAGCAAACAACACAGG < 41bp 1 0.319509711945727 1 0.463130205869675 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD44 ENSG00000026508 CDS Human protein_coding chr11:35201875 chr11:35201856 nonsynonymous SNV 0.577 4 2 hm5C_associated_SNPs_41402 0 0 1 0 2 CD44 chr11:35201821 3'AG 35201821 Downstream 36bp
chr11 35201856 35201856 1 + G A UCEC 35201875 + 35201855 35201895 41 CGGATCCACCCCAACTCCATCTGTGCAGCAAACAACACAGG CAGATCCACCCCAACTCCATCTGTGCAGCAAACAACACAGG < 41bp 1 0.319509711945727 1 0.463130205869675 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD44 ENSG00000026508 CDS Human protein_coding chr11:35201875 chr11:35201856 nonsynonymous SNV 0.577 4 2 hm5C_associated_SNPs_41402 0 0 1 0 2 CD44 chr11:35201954 5'GT 35201954 Upstream 99bp
chrX 47101579 47101579 1 + C T UCEC 47101578 + 47101558 47101598 41 CAAGTCCACGCTGGTGTGCCCCGATTGTGGCAATGTATCTG CAAGTCCACGCTGGTGTGCCCTGATTGTGGCAATGTATCTG < 41bp 1 0.315759006393415 1 0.0622163414955139 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47101578 chrX:47101579 synonymous SNV . 0 22 hm5C_associated_SNPs_41403 0 0 1 0 1 USP11 chrX:47101481 3'AG 47101481 Downstream 99bp
chr3 49728616 49728616 1 + C T UCEC 49728615 + 49728595 49728635 41 AAGGATGGCATCCAAGGGGGCCGGCATGTCTTTCTCCCGCA AAGGATGGCATCCAAGGGGGCTGGCATGTCTTTCTCCCGCA < 41bp 1 0.317792547706886 1 0.363150089979172 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49728615 chr3:49728616 synonymous SNV . 0 22 hm5C_associated_SNPs_41404 0 0 1 0 2 RNF123 chr3:49728563 3'AG 49728563 Downstream 54bp
chr3 49728616 49728616 1 + C T UCEC 49728615 + 49728595 49728635 41 AAGGATGGCATCCAAGGGGGCCGGCATGTCTTTCTCCCGCA AAGGATGGCATCCAAGGGGGCTGGCATGTCTTTCTCCCGCA < 41bp 1 0.317792547706886 1 0.363150089979172 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49728615 chr3:49728616 synonymous SNV . 0 22 hm5C_associated_SNPs_41404 0 0 1 0 2 RNF123 chr3:49728680 5'GT 49728680 Upstream 65bp
chr2 220503471 220503471 1 + G A UCEC 220503474 + 220503454 220503494 41 GACCTCTCCCGATAAGCGCTCGTGGTTCATCCCACCCCTGG GACCTCTCCCGATAAGCACTCGTGGTTCATCCCACCCCTGG < 41bp 1 0.612199326718548 1 0.850510358810425 experiment 0.775601346562905 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220503474 chr2:220503471 nonsynonymous SNV 0.937 5 18 hm5C_associated_SNPs_41406 0 0 0 0 1 SLC4A3 chr2:220503425 3'AG 220503425 Downstream 47bp
chr17 55191847 55191847 1 + G A UCEC 55191830 + 55191810 55191850 41 CCCTCTACAGCTCATGCTGCCTGATGGCATCACCGTGGAGG CCCTCTACAGCTCATGCTGCCTGATGGCATCACCGTGAAGG < 41bp 1 0.255374359786748 1 0.0868304967880249 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55191830 chr17:55191847 nonsynonymous SNV 0.999 4 38 hm5C_associated_SNPs_41407 0 0 1 1 1 AKAP1 chr17:55191820 3'AG 55191820 Downstream 28bp
chr1 231114993 231114993 1 + T C UCEC 231114974 + 231114954 231114994 41 ATCGAATGCAACCAGGAGGCCAAAGAGTTGTACCGAGACTA ATCGAATGCAACCAGGAGGCCAAAGAGTTGTACCGAGACCA < 41bp 1 0.619558993260151 1 0.445395410060883 experiment 0.760882013479699 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARV1 ENSG00000173409 CDS Human protein_coding chr1:231114974 chr1:231114993 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_41408 0 0 1 0 1 ARV1 chr1:231115025 5'GT 231115025 Upstream 33bp
chr2 173429368 173429368 1 + G A UCEC 173429352 + 173429332 173429372 41 CTGTCACCAGCCAGAATGTTCAGTACTTTTTGGATCGATTC CTGTCACCAGCCAGAATGTTCAGTACTTTTTGGATCAATTC < 41bp 1 0.450441573180742 1 0.0647924244403839 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PDK1 ENSG00000152256 CDS Human protein_coding chr2:173429352 chr2:173429368 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_41409 0 0 0 0 1 PDK1 chr2:173429415 5'GT 173429415 Upstream 48bp
chr15 75113013 75113013 1 + G A UCEC 75113003 + 75112983 75113023 41 CTCAGCCCTTCCTGGAGATGCAGCAGCTCCGCCTGGCGAGG CTCAGCCCTTCCTGGAGATGCAGCAGCTCCACCTGGCGAGG < 41bp 1 0.780774016043206 1 0.592987895011902 experiment 0.438451967913588 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control LMAN1L ENSG00000140506 CDS Human protein_coding chr15:75113003 chr15:75113013 nonsynonymous SNV 0.000 0 31 hm5C_associated_SNPs_41412 0 0 0 0 2 LMAN1L chr15:75112976 3'AG 75112976 Downstream 38bp
chr15 75113013 75113013 1 + G A UCEC 75113003 + 75112983 75113023 41 CTCAGCCCTTCCTGGAGATGCAGCAGCTCCGCCTGGCGAGG CTCAGCCCTTCCTGGAGATGCAGCAGCTCCACCTGGCGAGG < 41bp 1 0.780774016043206 1 0.592987895011902 experiment 0.438451967913588 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control LMAN1L ENSG00000140506 CDS Human protein_coding chr15:75113003 chr15:75113013 nonsynonymous SNV 0.000 0 31 hm5C_associated_SNPs_41412 0 0 0 0 2 LMAN1L chr15:75113108 5'GT 75113108 Upstream 96bp
chr7 23235490 23235490 1 + C T UCEC 23235473 + 23235453 23235493 41 TTCAGGTTTTACAGACATTTCACCAGAGGAATTGAGGCTTG TTCAGGTTTTACAGACATTTCACCAGAGGAATTGAGGTTTG < 41bp 1 0.717759075703268 1 0.492840260267258 experiment 0.564481848593463 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23235473 chr7:23235490 nonsynonymous SNV 0.999 3 38 hm5C_associated_SNPs_41413 0 0 1 0 2 NUPL2 chr7:23235458 3'AG 23235458 Downstream 33bp
chr7 23235490 23235490 1 + C T UCEC 23235473 + 23235453 23235493 41 TTCAGGTTTTACAGACATTTCACCAGAGGAATTGAGGCTTG TTCAGGTTTTACAGACATTTCACCAGAGGAATTGAGGTTTG < 41bp 1 0.717759075703268 1 0.492840260267258 experiment 0.564481848593463 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23235473 chr7:23235490 nonsynonymous SNV 0.999 3 38 hm5C_associated_SNPs_41413 0 0 1 0 2 NUPL2 chr7:23235534 5'GT 23235534 Upstream 45bp
chrX 12838853 12838853 1 + C A UCEC 12838861 + 12838841 12838881 41 AAATAATGCCGCCTTTGAGGCTGTTGTCGTCACAAACACAA AAATAATGCCGCATTTGAGGCTGTTGTCGTCACAAACACAA < 41bp 1 0.288677130995295 1 0.0640494227409363 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12838861 chrX:12838853 synonymous SNV . 0 13 hm5C_associated_SNPs_41414 0 0 1 0 2 PRPS2 chrX:12838763 3'AG 12838763 Downstream 91bp
chrX 12838853 12838853 1 + C A UCEC 12838861 + 12838841 12838881 41 AAATAATGCCGCCTTTGAGGCTGTTGTCGTCACAAACACAA AAATAATGCCGCATTTGAGGCTGTTGTCGTCACAAACACAA < 41bp 1 0.288677130995295 1 0.0640494227409363 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12838861 chrX:12838853 synonymous SNV . 0 13 hm5C_associated_SNPs_41414 0 0 1 0 2 PRPS2 chrX:12838922 5'GT 12838922 Upstream 70bp
chr7 94057026 94057026 1 + G A UCEC 94057027 + 94057007 94057047 41 CGATGGAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCAC CGATGGAGACTTCTACAGGACTGACCAGCCTCGCTCAGCAC < 41bp 1 0.13807671910617 1 0.0230092704296112 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057027 chr7:94057026 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_41415 0 0 0 0 1 COL1A2 chr7:94056939 3'AG 94056939 Downstream 88bp
chr7 94057026 94057026 1 + G A UCEC 94057032 + 94057012 94057052 41 GAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCACCTTCT GAGACTTCTACAGGACTGACCAGCCTCGCTCAGCACCTTCT < 41bp 1 0.12146151109489 1 0.167815566062927 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057032 chr7:94057026 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_41416 0 0 0 0 1 COL1A2 chr7:94056939 3'AG 94056939 Downstream 88bp
chr1 109803862 109803862 1 + G A UCEC 109803866 + 109803846 109803886 41 CGCGGCCTGCGCCAGCGTTTCCACTTCACCCTGGCCCTCTC CGCGGCCTGCGCCAGCATTTCCACTTCACCCTGGCCCTCTC < 41bp 1 0.182697610232211 1 0.177073895931244 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109803866 chr1:109803862 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_41418 0 0 1 0 1 CELSR2 chr1:109803886 5'GT 109803886 Upstream 25bp
chrX 135106623 135106623 1 + C A UCEC 135106613 + 135106593 135106633 41 TGGGTATTTGGTGGTGGCACCACTGCAATGCTGTCATGCTT TGGGTATTTGGTGGTGGCACCACTGCAATGATGTCATGCTT < 41bp 1 0.312932712501633 1 0.590934574604034 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135106613 chrX:135106623 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_41419 0 0 1 0 1 SLC9A6 chrX:135106642 5'GT 135106642 Upstream 20bp
chr2 113950927 113950927 1 + C T UCEC 113950934 + 113950914 113950954 41 CACCATTGCAATCCGGGGATCTTCCCCTCAGTAGGTAGGGA CACCATTGCAATCTGGGGATCTTCCCCTCAGTAGGTAGGGA < 41bp 1 0.0425793727629333 1 0.106544435024261 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950934 chr2:113950927 nonsynonymous SNV 0.376 0 14 hm5C_associated_SNPs_41420 0 0 0 0 2 PSD4 chr2:113950835 3'AG 113950835 Downstream 93bp
chr2 113950927 113950927 1 + C T UCEC 113950934 + 113950914 113950954 41 CACCATTGCAATCCGGGGATCTTCCCCTCAGTAGGTAGGGA CACCATTGCAATCTGGGGATCTTCCCCTCAGTAGGTAGGGA < 41bp 1 0.0425793727629333 1 0.106544435024261 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950934 chr2:113950927 nonsynonymous SNV 0.376 0 14 hm5C_associated_SNPs_41420 0 0 0 0 2 PSD4 chr2:113950947 5'GT 113950947 Upstream 21bp
chr11 45882558 45882558 1 + C T UCEC 45882565 + 45882545 45882585 41 ACGACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGT ACGACGAGACCTATGGCGTGCCCTCCCTGGAGGAGCTGGGT < 41bp 1 0.0255518805751325 1 0.0464514493942261 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45882565 chr11:45882558 synonymous SNV . 0 14 hm5C_associated_SNPs_41421 0 0 1 0 1 CRY2 chr11:45882583 5'GT 45882583 Upstream 26bp
chr11 45882558 45882558 1 + C T UCEC 45882566 + 45882546 45882586 41 CGACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGTG CGACGAGACCTATGGCGTGCCCTCCCTGGAGGAGCTGGGTG < 41bp 1 0.044328189614818 1 0.0429269373416901 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45882566 chr11:45882558 synonymous SNV . 0 13 hm5C_associated_SNPs_41422 0 0 1 0 1 CRY2 chr11:45882583 5'GT 45882583 Upstream 26bp
chr10 105203013 105203013 1 + C T UCEC 105203022 + 105203002 105203042 41 AGGTCTTTGAGCGAGCCGTGCAGTACAACGAGCCTCTCAAA AGGTCTTTGAGTGAGCCGTGCAGTACAACGAGCCTCTCAAA < 41bp 1 0.226716690806094 1 0.757209062576294 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105203022 chr10:105203013 stopgain 0.968 1 12 hm5C_associated_SNPs_41423 0 0 1 0 2 PDCD11 chr10:105202922 3'AG 105202922 Downstream 92bp
chr10 105203013 105203013 1 + C T UCEC 105203022 + 105203002 105203042 41 AGGTCTTTGAGCGAGCCGTGCAGTACAACGAGCCTCTCAAA AGGTCTTTGAGTGAGCCGTGCAGTACAACGAGCCTCTCAAA < 41bp 1 0.226716690806094 1 0.757209062576294 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105203022 chr10:105203013 stopgain 0.968 1 12 hm5C_associated_SNPs_41423 0 0 1 0 2 PDCD11 chr10:105203090 5'GT 105203090 Upstream 78bp
chr9 33912025 33912025 1 + C T UCEC 33912033 + 33912013 33912053 41 CCCAGCCAATGTCGATGCTTCAGTTATGTTCAGGAAATGGA CCCAGCCAATGTTGATGCTTCAGTTATGTTCAGGAAATGGA < 41bp 1 0.145484394877676 1 0.0540899038314819 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33912033 chr9:33912025 synonymous SNV . 0 13 hm5C_associated_SNPs_41426 0 0 1 0 2 UBE2R2 chr9:33911962 3'AG 33911962 Downstream 64bp
chr9 33912025 33912025 1 + C T UCEC 33912033 + 33912013 33912053 41 CCCAGCCAATGTCGATGCTTCAGTTATGTTCAGGAAATGGA CCCAGCCAATGTTGATGCTTCAGTTATGTTCAGGAAATGGA < 41bp 1 0.145484394877676 1 0.0540899038314819 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33912033 chr9:33912025 synonymous SNV . 0 13 hm5C_associated_SNPs_41426 0 0 1 0 2 UBE2R2 chr9:33912096 5'GT 33912096 Upstream 72bp
chr1 156106048 156106048 1 + C T UCEC 156106055 + 156106035 156106075 41 GCGCAGCCGTGGCCGTGCTTCCTCTCACTCATCCCAGACAC GCGCAGCCGTGGCTGTGCTTCCTCTCACTCATCCCAGACAC < 41bp 1 0.200531257245635 1 0.051869809627533 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156106055 chr1:156106048 nonsynonymous SNV 0.996 5 14 hm5C_associated_SNPs_41427 4 0 1 0 1 LMNA chr1:156106005 3'AG 156106005 Downstream 44bp
chr1 160325697 160325697 1 + G A UCEC 160325712 + 160325692 160325732 41 TATGAGCTTGCAGGAGGAACCAACTTCAGCGACACAGTTCA TATGAACTTGCAGGAGGAACCAACTTCAGCGACACAGTTCA < 41bp 1 0.553502634349386 1 0.260097920894623 experiment 0.892994731301228 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCSTN ENSG00000162736 CDS Human protein_coding chr1:160325712 chr1:160325697 synonymous SNV . 0 6 hm5C_associated_SNPs_41428 0 0 1 0 2 NCSTN chr1:160325653 3'AG 160325653 Downstream 45bp
chr1 160325697 160325697 1 + G A UCEC 160325712 + 160325692 160325732 41 TATGAGCTTGCAGGAGGAACCAACTTCAGCGACACAGTTCA TATGAACTTGCAGGAGGAACCAACTTCAGCGACACAGTTCA < 41bp 1 0.553502634349386 1 0.260097920894623 experiment 0.892994731301228 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCSTN ENSG00000162736 CDS Human protein_coding chr1:160325712 chr1:160325697 synonymous SNV . 0 6 hm5C_associated_SNPs_41428 0 0 1 0 2 NCSTN chr1:160325748 5'GT 160325748 Upstream 52bp
chr1 156876658 156876658 1 + G T UCEC 156876640 + 156876620 156876660 41 TGCGATCCCCAGACTGGAGCCTGCTTCTGCCCCGCAGAGAG TGCGATCCCCAGACTGGAGCCTGCTTCTGCCCCGCAGATAG < 41bp 1 0.341432312887983 1 0.137677788734436 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156876640 chr1:156876658 nonsynonymous SNV 0.981 1 39 hm5C_associated_SNPs_41429 0 0 0 0 1 PEAR1 chr1:156876672 5'GT 156876672 Upstream 15bp
chr8 42927434 42927434 1 + G A UCEC 42927423 + 42927403 42927443 41 GATGCAAAGAATTATCATGCCTGGCAGCATCGACAATGGGT GATGCAAAGAATTATCATGCCTGGCAGCATCAACAATGGGT < 41bp 1 0.453204889160651 1 0.0619671940803528 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FNTA ENSG00000168522;ENSG00000254673 CDS Human other chr8:42927423 chr8:42927434 nonsynonymous SNV 0.998 4 32 hm5C_associated_SNPs_41430 0 0 0 0 1 FNTA chr8:42927450 5'GT 42927450 Upstream 17bp
chr20 42089372 42089372 1 + G A UCEC 42089358 + 42089338 42089378 41 TCCAGTTCCAGGTCGCGGAGCAAAGGTCGATCACGTTCTCG TCCAGTTCCAGGTCGCGGAGCAAAGGTCGATCACATTCTCG < 41bp 1 0.435126834560868 1 0.33639520406723 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089358 chr20:42089372 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_41432 0 0 1 0 1 SRSF6 chr20:42089343 3'AG 42089343 Downstream 30bp
chr5 5303759 5303759 1 + G A UCEC 5303760 + 5303740 5303780 41 CCAACCCCTCGGCCAGAGCGCAGCTGCTGCCCGACGCTGTC CCAACCCCTCGGCCAGAGCACAGCTGCTGCCCGACGCTGTC < 41bp 1 0.529740589409741 1 0.162889569997787 experiment 0.940518821180518 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5303760 chr5:5303759 synonymous SNV . 0 20 hm5C_associated_SNPs_41433 0 0 0 0 1 ADAMTS16 chr5:5303685 3'AG 5303685 Downstream 75bp
chrX 70514356 70514356 1 + G T UCEC 70514364 + 70514344 70514384 41 GACAGATGCAGTGAAGGCTCCTTCCTGCTAACCACGTAAGT GACAGATGCAGTTAAGGCTCCTTCCTGCTAACCACGTAAGT < 41bp 1 0.0800038804718592 1 0.131863981485367 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70514364 chrX:70514356 stopgain 1.000 1 13 hm5C_associated_SNPs_41434 0 0 1 0 1 NONO chrX:70514378 5'GT 70514378 Upstream 23bp
chr20 42249520 42249520 1 + G A UCEC 42249532 + 42249512 42249552 41 TGGCTCACGACAGGAGACATCCACCTAAACCAGATTGATGC TGGCTCACAACAGGAGACATCCACCTAAACCAGATTGATGC < 41bp 1 0.105870875401969 1 0.0426966547966003 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFT52 ENSG00000101052 CDS Human protein_coding chr20:42249532 chr20:42249520 synonymous SNV . 0 9 hm5C_associated_SNPs_41435 0 0 1 0 1 IFT52 chr20:42249497 3'AG 42249497 Downstream 24bp
chr1 9416617 9416617 1 + C T UCEC 9416605 + 9416585 9416625 41 TAGTGAGTGCCGTCTGGGGCCACTGTGAGATCCGAATGCGC TAGTGAGTGCCGTCTGGGGCCACTGTGAGATCTGAATGCGC < 41bp 1 0.245855574609914 1 0.177952021360397 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SPSB1 ENSG00000171621 CDS Human protein_coding chr1:9416605 chr1:9416617 stopgain 1.000 1 33 hm5C_associated_SNPs_41436 0 0 1 0 1 SPSB1 chr1:9416644 5'GT 9416644 Upstream 28bp
chr9 137701060 137701060 1 + G A UCEC 137701041 + 137701021 137701061 41 TTCTCTAGGGCGAGAAAGGCCCACAAGGCCCAGCTGGCCGA TTCTCTAGGGCGAGAAAGGCCCACAAGGCCCAGCTGGCCAA < 41bp 1 0.257365571151739 1 0.179080456495285 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137701041 chr9:137701060 nonsynonymous SNV 0.999 4 40 hm5C_associated_SNPs_41437 0 0 0 0 2 COL5A1 chr9:137701029 3'AG 137701029 Downstream 32bp
chr9 137701060 137701060 1 + G A UCEC 137701041 + 137701021 137701061 41 TTCTCTAGGGCGAGAAAGGCCCACAAGGCCCAGCTGGCCGA TTCTCTAGGGCGAGAAAGGCCCACAAGGCCCAGCTGGCCAA < 41bp 1 0.257365571151739 1 0.179080456495285 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137701041 chr9:137701060 nonsynonymous SNV 0.999 4 40 hm5C_associated_SNPs_41437 0 0 0 0 2 COL5A1 chr9:137701136 5'GT 137701136 Upstream 77bp
chr9 71861612 71861612 1 + T C UCEC 71861613 + 71861593 71861633 41 TATATTTCTATAGCTACAATCAACCTAAATTCAGCCAATGA TATATTTCTATAGCTACAACCAACCTAAATTCAGCCAATGA < 41bp 1 0.0541210612203172 1 0.409460991621017 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TJP2 ENSG00000119139 CDS Human protein_coding chr9:71861613 chr9:71861612 nonsynonymous SNV 0.996 4 20 hm5C_associated_SNPs_41438 0 0 1 0 1 TJP2 chr9:71861606 3'AG 71861606 Downstream 7bp
chr11 71191890 71191890 1 + C T UCEC 71191878 + 71191858 71191898 41 GAGGACTTGCTGGCACCCATCTCTGAGCCCATCGAGTGGAA GAGGACTTGCTGGCACCCATCTCTGAGCCCATTGAGTGGAA < 41bp 1 0.49368469943147 1 0.876479625701904 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71191878 chr11:71191890 synonymous SNV . 0 33 hm5C_associated_SNPs_41439 0 0 1 0 2 NADSYN1 chr11:71191801 3'AG 71191801 Downstream 90bp
chr11 71191890 71191890 1 + C T UCEC 71191878 + 71191858 71191898 41 GAGGACTTGCTGGCACCCATCTCTGAGCCCATCGAGTGGAA GAGGACTTGCTGGCACCCATCTCTGAGCCCATTGAGTGGAA < 41bp 1 0.49368469943147 1 0.876479625701904 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71191878 chr11:71191890 synonymous SNV . 0 33 hm5C_associated_SNPs_41439 0 0 1 0 2 NADSYN1 chr11:71191925 5'GT 71191925 Upstream 36bp
chr1 26136289 26136289 1 + C T UCEC 26136269 + 26136249 26136289 41 CATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCC CATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCT < 41bp 1 0.0353406484448395 1 0.153440713882446 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136269 chr1:26136289 nonsynonymous SNV 0.995 3 41 hm5C_associated_SNPs_41441 0 0 1 0 1 SELENON chr1:26136311 5'GT 26136311 Upstream 23bp
chr1 26136289 26136289 1 + C T UCEC 26136270 + 26136250 26136290 41 ATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCG ATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCTG < 41bp 1 0.139224707766982 1 0.0417031049728394 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136270 chr1:26136289 nonsynonymous SNV 0.995 3 40 hm5C_associated_SNPs_41442 0 0 1 0 1 SELENON chr1:26136311 5'GT 26136311 Upstream 23bp
chr1 26136289 26136289 1 + C T UCEC 26136273 + 26136253 26136293 41 ATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCT ATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCTGGCT < 41bp 1 0.097958878545415 1 0.0700403451919556 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136273 chr1:26136289 nonsynonymous SNV 0.995 3 37 hm5C_associated_SNPs_41443 0 0 1 0 1 SELENON chr1:26136311 5'GT 26136311 Upstream 23bp
chr1 26136289 26136289 1 + C T UCEC 26136274 + 26136254 26136294 41 TCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCTC TCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCTGGCTC < 41bp 1 0.468617106620211 1 0.0512657761573792 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136274 chr1:26136289 nonsynonymous SNV 0.995 3 36 hm5C_associated_SNPs_41444 0 0 1 0 1 SELENON chr1:26136311 5'GT 26136311 Upstream 23bp
chr7 56136261 56136261 1 + G T UCEC 56136260 + 56136240 56136280 41 CCAGACAGCAGAGATGGTGACGGGCCTGTGCGGGAGGCGAC CCAGACAGCAGAGATGGTGACTGGCCTGTGCGGGAGGCGAC < 41bp 1 0.543485870567988 1 0.102236539125443 experiment 0.913028258864023 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUMF2 ENSG00000129103 CDS Human protein_coding chr7:56136260 chr7:56136261 nonsynonymous SNV 0.928 5 22 hm5C_associated_SNPs_41449 0 0 1 0 2 SUMF2 chr7:56136175 3'AG 56136175 Downstream 87bp
chr7 56136261 56136261 1 + G T UCEC 56136260 + 56136240 56136280 41 CCAGACAGCAGAGATGGTGACGGGCCTGTGCGGGAGGCGAC CCAGACAGCAGAGATGGTGACTGGCCTGTGCGGGAGGCGAC < 41bp 1 0.543485870567988 1 0.102236539125443 experiment 0.913028258864023 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUMF2 ENSG00000129103 CDS Human protein_coding chr7:56136260 chr7:56136261 nonsynonymous SNV 0.928 5 22 hm5C_associated_SNPs_41449 0 0 1 0 2 SUMF2 chr7:56136331 5'GT 56136331 Upstream 71bp
chr6 43168205 43168205 1 + G A UCEC 43168200 + 43168180 43168220 41 CTGGGCCAGATCGAAGACCACAGACGAACCCACCAACCCAT CTGGGCCAGATCGAAGACCACAGACAAACCCACCAACCCAT < 41bp 1 0.204977280410012 1 0.509712994098663 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CUL9 ENSG00000112659 CDS Human protein_coding chr6:43168200 chr6:43168205 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_41450 0 0 0 0 1 CUL9 chr6:43168174 3'AG 43168174 Downstream 32bp
chr6 4935807 4935807 1 + T C UCEC 4935806 + 4935786 4935826 41 GACAACCAACATACAGACATCTGTTACAGGAGTGACTGCCA GACAACCAACATACAGACATCCGTTACAGGAGTGACTGCCA < 41bp 1 0.0629248607670492 1 0.133709281682968 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CDYL ENSG00000153046 CDS Human protein_coding chr6:4935806 chr6:4935807 synonymous SNV . 0 22 hm5C_associated_SNPs_41451 0 0 1 0 1 CDYL chr6:4935749 3'AG 4935749 Downstream 59bp
chr1 27631560 27631560 1 + A G UCEC 27631562 + 27631542 27631582 41 GGGAAAAGGAGACCACCAACCTGGTCCGTGTGCTCCAAGGG GGGAAAAGGAGACCACCAGCCTGGTCCGTGTGCTCCAAGGG < 41bp 1 0.58025874478525 1 0.544809281826019 experiment 0.839482510429501 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27631562 chr1:27631560 nonsynonymous SNV 0.997 1 19 hm5C_associated_SNPs_41452 0 0 1 0 2 WDTC1 chr1:27631492 3'AG 27631492 Downstream 69bp
chr1 27631560 27631560 1 + A G UCEC 27631562 + 27631542 27631582 41 GGGAAAAGGAGACCACCAACCTGGTCCGTGTGCTCCAAGGG GGGAAAAGGAGACCACCAGCCTGGTCCGTGTGCTCCAAGGG < 41bp 1 0.58025874478525 1 0.544809281826019 experiment 0.839482510429501 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27631562 chr1:27631560 nonsynonymous SNV 0.997 1 19 hm5C_associated_SNPs_41452 0 0 1 0 2 WDTC1 chr1:27631550 3'AG 27631550 Downstream 11bp
chr1 27631560 27631560 1 + A G UCEC 27631567 + 27631547 27631587 41 AAGGAGACCACCAACCTGGTCCGTGTGCTCCAAGGGGATGA AAGGAGACCACCAGCCTGGTCCGTGTGCTCCAAGGGGATGA < 41bp 1 0.183867741045642 1 0.0661131739616394 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27631567 chr1:27631560 nonsynonymous SNV 0.997 1 14 hm5C_associated_SNPs_41453 0 0 1 0 2 WDTC1 chr1:27631492 3'AG 27631492 Downstream 69bp
chr1 27631560 27631560 1 + A G UCEC 27631567 + 27631547 27631587 41 AAGGAGACCACCAACCTGGTCCGTGTGCTCCAAGGGGATGA AAGGAGACCACCAGCCTGGTCCGTGTGCTCCAAGGGGATGA < 41bp 1 0.183867741045642 1 0.0661131739616394 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27631567 chr1:27631560 nonsynonymous SNV 0.997 1 14 hm5C_associated_SNPs_41453 0 0 1 0 2 WDTC1 chr1:27631550 3'AG 27631550 Downstream 11bp
chr19 11548775 11548775 1 + T C UCEC 11548761 + 11548741 11548781 41 GGCTATAAGCCCCTGTATATCCCCTCCAACCGGGTCAACGA GGCTATAAGCCCCTGTATATCCCCTCCAACCGGGCCAACGA < 41bp 1 0.356049737399799 1 0.215648949146271 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11548761 chr19:11548775 nonsynonymous SNV 0.966 3 35 hm5C_associated_SNPs_41454 0 0 1 0 2 PRKCSH chr19:11548697 3'AG 11548697 Downstream 79bp
chr19 11548775 11548775 1 + T C UCEC 11548761 + 11548741 11548781 41 GGCTATAAGCCCCTGTATATCCCCTCCAACCGGGTCAACGA GGCTATAAGCCCCTGTATATCCCCTCCAACCGGGCCAACGA < 41bp 1 0.356049737399799 1 0.215648949146271 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11548761 chr19:11548775 nonsynonymous SNV 0.966 3 35 hm5C_associated_SNPs_41454 0 0 1 0 2 PRKCSH chr19:11548792 5'GT 11548792 Upstream 18bp
chr10 91465086 91465086 1 + G A UCEC 91465083 + 91465063 91465103 41 TTTTAATCAAGAGGGAGTACCTCGACCATCTTATGTTTTTA TTTTAATCAAGAGGGAGTACCTCAACCATCTTATGTTTTTA < 41bp 1 0.554744525550609 1 0.37250941991806 experiment 0.890510948898781 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF20B ENSG00000138182 CDS Human protein_coding chr10:91465083 chr10:91465086 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_41455 0 0 1 0 1 KIF20B chr10:91465051 3'AG 91465051 Downstream 36bp
chr16 22271810 22271810 1 + A G UCEC 22271796 + 22271776 22271816 41 TGCCCAGATTGGCCAGTGTTCAGTGACCTCGATAACATGGC TGCCCAGATTGGCCAGTGTTCAGTGACCTCGATAGCATGGC < 41bp 1 0.378893504956299 1 0.764914989471436 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EEF2K ENSG00000103319 CDS Human protein_coding chr16:22271796 chr16:22271810 nonsynonymous SNV 0.833 1 35 hm5C_associated_SNPs_41459 0 0 1 0 2 EEF2K chr16:22271783 3'AG 22271783 Downstream 28bp
chr16 22271810 22271810 1 + A G UCEC 22271796 + 22271776 22271816 41 TGCCCAGATTGGCCAGTGTTCAGTGACCTCGATAACATGGC TGCCCAGATTGGCCAGTGTTCAGTGACCTCGATAGCATGGC < 41bp 1 0.378893504956299 1 0.764914989471436 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EEF2K ENSG00000103319 CDS Human protein_coding chr16:22271796 chr16:22271810 nonsynonymous SNV 0.833 1 35 hm5C_associated_SNPs_41459 0 0 1 0 2 EEF2K chr16:22271850 5'GT 22271850 Upstream 41bp
chr19 50919735 50919735 1 + G A UCEC 50919728 + 50919708 50919748 41 AGCAGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGCCC AGCAGCAGCTGGCCAAGCCCCTCCTGCACATCTTCGAGCCC < 41bp 1 0.397422721715072 1 0.247885555028915 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLD1 ENSG00000062822;ENSG00000142539 CDS Human other chr19:50919728 chr19:50919735 nonsynonymous SNV 0.997 4 28 hm5C_associated_SNPs_41460 0 0 1 0 2 POLD1 chr19:50919653 3'AG 50919653 Downstream 83bp
chr19 50919735 50919735 1 + G A UCEC 50919728 + 50919708 50919748 41 AGCAGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGCCC AGCAGCAGCTGGCCAAGCCCCTCCTGCACATCTTCGAGCCC < 41bp 1 0.397422721715072 1 0.247885555028915 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLD1 ENSG00000062822;ENSG00000142539 CDS Human other chr19:50919728 chr19:50919735 nonsynonymous SNV 0.997 4 28 hm5C_associated_SNPs_41460 0 0 1 0 2 POLD1 chr19:50919785 5'GT 50919785 Upstream 51bp
chr19 50919735 50919735 1 + G A UCEC 50919730 + 50919710 50919750 41 CAGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGCCCAT CAGCAGCTGGCCAAGCCCCTCCTGCACATCTTCGAGCCCAT < 41bp 1 0.066287248317346 1 0.161419123411179 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLD1 ENSG00000062822;ENSG00000142539 CDS Human other chr19:50919730 chr19:50919735 nonsynonymous SNV 0.997 4 26 hm5C_associated_SNPs_41461 0 0 1 0 2 POLD1 chr19:50919653 3'AG 50919653 Downstream 83bp
chr19 50919735 50919735 1 + G A UCEC 50919730 + 50919710 50919750 41 CAGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGCCCAT CAGCAGCTGGCCAAGCCCCTCCTGCACATCTTCGAGCCCAT < 41bp 1 0.066287248317346 1 0.161419123411179 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLD1 ENSG00000062822;ENSG00000142539 CDS Human other chr19:50919730 chr19:50919735 nonsynonymous SNV 0.997 4 26 hm5C_associated_SNPs_41461 0 0 1 0 2 POLD1 chr19:50919785 5'GT 50919785 Upstream 51bp
chr19 50919735 50919735 1 + G A UCEC 50919731 + 50919711 50919751 41 AGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGCCCATC AGCAGCTGGCCAAGCCCCTCCTGCACATCTTCGAGCCCATC < 41bp 1 0.533568122221783 1 0.336264818906784 experiment 0.932863755556433 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLD1 ENSG00000062822;ENSG00000142539 CDS Human other chr19:50919731 chr19:50919735 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_41462 0 0 1 0 2 POLD1 chr19:50919653 3'AG 50919653 Downstream 83bp
chr19 50919735 50919735 1 + G A UCEC 50919731 + 50919711 50919751 41 AGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGCCCATC AGCAGCTGGCCAAGCCCCTCCTGCACATCTTCGAGCCCATC < 41bp 1 0.533568122221783 1 0.336264818906784 experiment 0.932863755556433 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLD1 ENSG00000062822;ENSG00000142539 CDS Human other chr19:50919731 chr19:50919735 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_41462 0 0 1 0 2 POLD1 chr19:50919785 5'GT 50919785 Upstream 51bp
chr10 75871687 75871687 1 + G T UCEC 75871668 + 75871648 75871688 41 CTTCCCGCCATCGACAAAGCCGGGCATCCCAGCCGCTGAGG CTTCCCGCCATCGACAAAGCCGGGCATCCCAGCCGCTGATG < 41bp 1 0.499376355386773 1 0.654867708683014 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75871668 chr10:75871687 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_41466 0 0 1 0 1 VCL chr10:75871667 3'AG 75871667 Downstream 21bp
chr1 26109127 26109127 1 + G A UCEC 26109121 + 26109101 26109141 41 AAGCCGGTTTCTCTGGGATCCAAGACGTGTACAGTAGCACC AAGCCGGTTTCTCTGGGATCCAAGACATGTACAGTAGCACC < 41bp 1 0.585676878082853 1 0.602328181266785 experiment 0.828646243834293 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26109121 chr1:26109127 nonsynonymous SNV 0.797 5 27 hm5C_associated_SNPs_41467 0 0 1 0 2 MAN1C1 chr1:26109076 3'AG 26109076 Downstream 52bp
chr1 26109127 26109127 1 + G A UCEC 26109121 + 26109101 26109141 41 AAGCCGGTTTCTCTGGGATCCAAGACGTGTACAGTAGCACC AAGCCGGTTTCTCTGGGATCCAAGACATGTACAGTAGCACC < 41bp 1 0.585676878082853 1 0.602328181266785 experiment 0.828646243834293 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26109121 chr1:26109127 nonsynonymous SNV 0.797 5 27 hm5C_associated_SNPs_41467 0 0 1 0 2 MAN1C1 chr1:26109191 5'GT 26109191 Upstream 65bp
chr5 72798825 72798825 1 + A G UCEC 72798844 + 72798824 72798864 41 CATTACAGGCCATGCTGAGACAAAGCAGCTGACAGAAATGC CGTTACAGGCCATGCTGAGACAAAGCAGCTGACAGAAATGC < 41bp 1 0.642513257359405 1 0.453345626592636 experiment 0.714973485281191 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTF3 ENSG00000145741 CDS Human protein_coding chr5:72798844 chr5:72798825 nonsynonymous SNV 1.000 0 2 hm5C_associated_SNPs_41469 0 0 1 0 1 BTF3 chr5:72798741 3'AG 72798741 Downstream 85bp
chr20 54970777 54970777 1 + G A UCEC 54970762 + 54970742 54970782 41 CACCCTCGGAGCAGCTCCTGCATCTCATCAAACTCGGTAGA CACCCTCGGAGCAGCTCCTGCATCTCATCAAACTCAGTAGA < 41bp 1 0.164351340970444 1 0.128752917051315 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CSTF1 ENSG00000101138 CDS Human protein_coding chr20:54970762 chr20:54970777 nonsynonymous SNV 0.916 3 36 hm5C_associated_SNPs_41470 0 0 1 0 1 CSTF1 chr20:54970777 5'GT 54970777 Upstream 1bp
chr8 56864617 56864617 1 + T C UCEC 56864624 + 56864604 56864644 41 TAATGGGGGCTATTACATCTCTCCACGAATCACTTTTCCCT TAATGGGGGCTATCACATCTCTCCACGAATCACTTTTCCCT < 41bp 1 0.747011260267038 1 0.920551419258118 experiment 0.505977479465924 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56864624 chr8:56864617 nonsynonymous SNV 0.999 5 14 hm5C_associated_SNPs_41471 0 0 1 0 2 LYN chr8:56864525 3'AG 56864525 Downstream 93bp
chr8 56864617 56864617 1 + T C UCEC 56864624 + 56864604 56864644 41 TAATGGGGGCTATTACATCTCTCCACGAATCACTTTTCCCT TAATGGGGGCTATCACATCTCTCCACGAATCACTTTTCCCT < 41bp 1 0.747011260267038 1 0.920551419258118 experiment 0.505977479465924 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56864624 chr8:56864617 nonsynonymous SNV 0.999 5 14 hm5C_associated_SNPs_41471 0 0 1 0 2 LYN chr8:56864674 5'GT 56864674 Upstream 58bp
chrX 70514348 70514348 1 + G T UCEC 70514364 + 70514344 70514384 41 GACAGATGCAGTGAAGGCTCCTTCCTGCTAACCACGTAAGT GACATATGCAGTGAAGGCTCCTTCCTGCTAACCACGTAAGT < 41bp 1 0.0816942383978632 1 0.12838488817215 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70514364 chrX:70514348 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_41473 0 0 1 0 1 NONO chrX:70514378 5'GT 70514378 Upstream 31bp
chr12 123346280 123346280 1 + G A UCEC 123346273 + 123346253 123346293 41 CTTGACAAAAAGGATGGCATCTACCCAGCTCAACTCGTGAA CTTGACAAAAAGGATGGCATCTACCCAACTCAACTCGTGAA < 41bp 1 0.174735252761019 1 0.0691380798816681 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HIP1R ENSG00000130787 CDS Human protein_coding chr12:123346273 chr12:123346280 nonsynonymous SNV 0.980 1 28 hm5C_associated_SNPs_41474 0 0 0 0 1 HIP1R chr12:123346253 3'AG 123346253 Downstream 28bp
chr11 67378022 67378022 1 + C T UCEC 67378025 + 67378005 67378045 41 AAGCCCCGCCTGAAGCCCCCCTTCCCCGCAGACGTGGGTAA AAGCCCCGCCTGAAGCCTCCCTTCCCCGCAGACGTGGGTAA < 41bp 1 0.163188777514432 1 0.0773984789848328 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67378025 chr11:67378022 synonymous SNV . 0 18 hm5C_associated_SNPs_41475 0 0 1 0 1 NDUFV1 chr11:67378041 5'GT 67378041 Upstream 20bp
chr18 46284714 46284714 1 + C T UCEC 46284696 + 46284676 46284716 41 AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGCGG AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGTGG < 41bp 1 0.44407557438252 1 0.119130432605743 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284696 chr18:46284714 nonsynonymous SNV 0.998 4 39 hm5C_associated_SNPs_41476 0 0 0 0 2 CTIF chr18:46284776 5'GT 46284776 Upstream 63bp
chr18 46284714 46284714 1 + C T UCEC 46284696 + 46284676 46284716 41 AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGCGG AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGTGG < 41bp 1 0.44407557438252 1 0.119130432605743 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284696 chr18:46284714 nonsynonymous SNV 0.998 4 39 hm5C_associated_SNPs_41476 0 0 0 0 2 CTIF chr18:46284782 5'GT 46284782 Upstream 69bp
chr12 124181003 124181003 1 + A T UCEC 124181019 + 124180999 124181039 41 CAACAGGATGAATAATGTCACGACTTTACATCTTTGGCAAT CAACTGGATGAATAATGTCACGACTTTACATCTTTGGCAAT < 41bp 1 0.253369633941891 1 0.0998455584049225 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124181019 chr12:124181003 nonsynonymous SNV 0.001 3 5 hm5C_associated_SNPs_41477 0 0 1 0 2 TCTN2 chr12:124180962 3'AG 124180962 Downstream 42bp
chr12 124181003 124181003 1 + A T UCEC 124181019 + 124180999 124181039 41 CAACAGGATGAATAATGTCACGACTTTACATCTTTGGCAAT CAACTGGATGAATAATGTCACGACTTTACATCTTTGGCAAT < 41bp 1 0.253369633941891 1 0.0998455584049225 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124181019 chr12:124181003 nonsynonymous SNV 0.001 3 5 hm5C_associated_SNPs_41477 0 0 1 0 2 TCTN2 chr12:124181042 5'GT 124181042 Upstream 40bp
chr14 23240646 23240646 1 + C A UCEC 23240645 + 23240625 23240665 41 TTTCTCTTCTCCCCTCAGGTCCTTTACGACAGACCTTTACC TTTCTCTTCTCCCCTCAGGTCATTTACGACAGACCTTTACC < 41bp 1 0.0388017694770571 1 0.104668080806732 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control OXA1L ENSG00000155463 CDS Human protein_coding chr14:23240645 chr14:23240646 nonsynonymous SNV 0.866 4 22 hm5C_associated_SNPs_41478 0 0 1 1 1 OXA1L chr14:23240643 3'AG 23240643 Downstream 4bp
chr2 26987226 26987226 1 + G T UCEC 26987239 + 26987219 26987259 41 TGGCCTGGACCAAGTACCAGCTGTTCCTGGCCGGGCTCATG TGGCCTGTACCAAGTACCAGCTGTTCCTGGCCGGGCTCATG < 41bp 1 0.135694118049897 1 0.0987737774848938 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC35F6 ENSG00000213699 CDS Human protein_coding chr2:26987239 chr2:26987226 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_41479 0 0 1 0 1 SLC35F6 chr2:26987294 5'GT 26987294 Upstream 69bp
chr10 75533012 75533012 1 + C T UCEC 75533032 + 75533012 75533052 41 CCACGGCCACCACCGAGGATCCAGAGCTCTTGGCTTTCTTG TCACGGCCACCACCGAGGATCCAGAGCTCTTGGCTTTCTTG < 41bp 1 0.587419647626574 1 0.11345836520195 experiment 0.825160704746853 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FUT11 ENSG00000196968 CDS Human protein_coding chr10:75533032 chr10:75533012 nonsynonymous SNV 0.982 0 1 hm5C_associated_SNPs_41480 0 0 0 0 2 FUT11 chr10:75532948 3'AG 75532948 Downstream 65bp
chr10 75533012 75533012 1 + C T UCEC 75533032 + 75533012 75533052 41 CCACGGCCACCACCGAGGATCCAGAGCTCTTGGCTTTCTTG TCACGGCCACCACCGAGGATCCAGAGCTCTTGGCTTTCTTG < 41bp 1 0.587419647626574 1 0.11345836520195 experiment 0.825160704746853 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FUT11 ENSG00000196968 CDS Human protein_coding chr10:75533032 chr10:75533012 nonsynonymous SNV 0.982 0 1 hm5C_associated_SNPs_41480 0 0 0 0 2 FUT11 chr10:75532952 3'AG 75532952 Downstream 61bp
chr18 13056641 13056641 1 + C A UCEC 13056650 + 13056630 13056670 41 TCCTGTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCAT TCCTGTGCCGTATGTTGGTACAAACTGTGGAATTGAACCAT < 41bp 1 0.0973238251125987 1 0.135035693645477 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056650 chr18:13056641 nonsynonymous SNV 0.003 2 12 hm5C_associated_SNPs_41481 0 0 1 0 1 CEP192 chr18:13056697 5'GT 13056697 Upstream 57bp
chr18 13056641 13056641 1 + C A UCEC 13056654 + 13056634 13056674 41 GTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCATGGGA GTGCCGTATGTTGGTACAAACTGTGGAATTGAACCATGGGA < 41bp 1 0.348096618291778 1 0.219852179288864 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056654 chr18:13056641 nonsynonymous SNV 0.003 2 8 hm5C_associated_SNPs_41482 0 0 1 0 1 CEP192 chr18:13056697 5'GT 13056697 Upstream 57bp
chr11 73074857 73074857 1 + C T UCEC 73074840 + 73074820 73074860 41 ATCCGTGACCGCAGGAACAGCATGAAGCTCCAGCATGCGGC ATCCGTGACCGCAGGAACAGCATGAAGCTCCAGCATGTGGC < 41bp 1 0.369180861584954 1 0.249510645866394 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73074840 chr11:73074857 nonsynonymous SNV 0.971 1 38 hm5C_associated_SNPs_41483 0 0 1 0 1 ARHGEF17 chr11:73074878 5'GT 73074878 Upstream 22bp
chr6 3152762 3152762 1 + C T UCEC 3152743 + 3152723 3152763 41 CTGCATTTGATGCCAGAAGGCAAACACAACCTGCATTTGCG CTGCATTTGATGCCAGAAGGCAAACACAACCTGCATTTGTG < 41bp 1 0.124581273641028 1 0.43380743265152 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BPHL ENSG00000137274 CDS Human protein_coding chr6:3152743 chr6:3152762 nonsynonymous SNV 0.982 4 40 hm5C_associated_SNPs_41484 0 0 1 0 1 BPHL chr6:3152722 3'AG 3152722 Downstream 41bp
chr7 139094314 139094314 1 + C T UCEC 139094319 + 139094299 139094339 41 TGTTTTTAAGAGAGTCGTAGCTGAGAAGCAGGAGAAAAGAA TGTTTTTAAGAGAGTTGTAGCTGAGAAGCAGGAGAAAAGAA < 41bp 1 0.490981995487283 1 0.15888187289238 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094319 chr7:139094314 synonymous SNV . 0 16 hm5C_associated_SNPs_41485 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 6bp
chr7 139094314 139094314 1 + C T UCEC 139094319 + 139094299 139094339 41 TGTTTTTAAGAGAGTCGTAGCTGAGAAGCAGGAGAAAAGAA TGTTTTTAAGAGAGTTGTAGCTGAGAAGCAGGAGAAAAGAA < 41bp 1 0.490981995487283 1 0.15888187289238 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094319 chr7:139094314 synonymous SNV . 0 16 hm5C_associated_SNPs_41485 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 87bp
chr16 28847783 28847783 1 + C T UCEC 28847774 + 28847754 28847794 41 CCCACTGCCTCCCCAGCTCTCAGTGACCCCGACTGTCTCCT CCCACTGCCTCCCCAGCTCTCAGTGACCCTGACTGTCTCCT < 41bp 1 0.567874636466745 1 0.454065203666687 experiment 0.86425072706651 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ATXN2L ENSG00000168488 CDS Human antisense chr16:28847774 chr16:28847783 synonymous SNV . 0 30 hm5C_associated_SNPs_41486 0 0 1 0 1 ATXN2L chr16:28847811 5'GT 28847811 Upstream 29bp
chr4 87691042 87691042 1 + T G UCEC 87691057 + 87691037 87691077 41 GCTCTTTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTG GCTCTGTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTG < 41bp 1 0.376372364151901 1 0.688832581043243 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPN13 ENSG00000163629 CDS Human protein_coding chr4:87691057 chr4:87691042 nonsynonymous SNV 0.999 4 6 hm5C_associated_SNPs_41487 0 0 1 0 1 PTPN13 chr4:87691136 5'GT 87691136 Upstream 95bp
chr4 87691042 87691042 1 + T G UCEC 87691060 + 87691040 87691080 41 CTTTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTGATG CTGTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTGATG < 41bp 1 0.226777676387837 1 0.587614595890045 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN13 ENSG00000163629 CDS Human protein_coding chr4:87691060 chr4:87691042 nonsynonymous SNV 0.999 4 3 hm5C_associated_SNPs_41488 0 0 1 0 1 PTPN13 chr4:87691136 5'GT 87691136 Upstream 95bp
chr1 156105746 156105746 1 + C T UCEC 156105730 + 156105710 156105750 41 AAGCTTCGAGACCTGGAGGACTCACTGGCCCGTGAGCGGGA AAGCTTCGAGACCTGGAGGACTCACTGGCCCGTGAGTGGGA < 41bp 1 0.25314447942684 1 0.20429790019989 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156105730 chr1:156105746 nonsynonymous SNV 0.998 5 37 hm5C_associated_SNPs_41490 1 0 1 0 1 LMNA chr1:156105692 3'AG 156105692 Downstream 55bp
chr12 56331270 56331270 1 + G T UCEC 56331284 + 56331264 56331304 41 AGCCTGGCACTGTTTCAATCCTTTGAGACTGGTCACTGCTT AGCCTGTCACTGTTTCAATCCTTTGAGACTGGTCACTGCTT < 41bp 1 0.204357943866073 1 0.0373035371303558 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56331284 chr12:56331270 nonsynonymous SNV 0.972 0 7 hm5C_associated_SNPs_41491 0 0 0 0 3 DGKA chr12:56331192 3'AG 56331192 Downstream 79bp
chr12 56331270 56331270 1 + G T UCEC 56331284 + 56331264 56331304 41 AGCCTGGCACTGTTTCAATCCTTTGAGACTGGTCACTGCTT AGCCTGTCACTGTTTCAATCCTTTGAGACTGGTCACTGCTT < 41bp 1 0.204357943866073 1 0.0373035371303558 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56331284 chr12:56331270 nonsynonymous SNV 0.972 0 7 hm5C_associated_SNPs_41491 0 0 0 0 3 DGKA chr12:56331327 5'GT 56331327 Upstream 58bp
chr12 56331270 56331270 1 + G T UCEC 56331284 + 56331264 56331304 41 AGCCTGGCACTGTTTCAATCCTTTGAGACTGGTCACTGCTT AGCCTGTCACTGTTTCAATCCTTTGAGACTGGTCACTGCTT < 41bp 1 0.204357943866073 1 0.0373035371303558 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56331284 chr12:56331270 nonsynonymous SNV 0.972 0 7 hm5C_associated_SNPs_41491 0 0 0 0 3 DGKA chr12:56331341 5'GT 56331341 Upstream 72bp
chr14 100367271 100367271 1 + G A UCEC 100367289 + 100367269 100367309 41 TTGCCCCCACATGTGCGCATCTGGGATTCTGTGACATTGAA TTACCCCCACATGTGCGCATCTGGGATTCTGTGACATTGAA < 41bp 1 0.487980689750955 1 0.283325552940369 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EML1 ENSG00000066629 CDS Human protein_coding chr14:100367289 chr14:100367271 synonymous SNV . 0 3 hm5C_associated_SNPs_41492 0 0 0 0 1 EML1 chr14:100367266 3'AG 100367266 Downstream 6bp
chr17 38142934 38142934 1 + T C UCEC 38142926 + 38142906 38142946 41 GAAGCCTATCTCCAACTCCTCGTGGTCATCTTCATGATGAA GAAGCCTATCTCCAACTCCTCGTGGTCACCTTCATGATGAA < 41bp 1 0.384671790627525 1 0.300720393657684 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38142926 chr17:38142934 nonsynonymous SNV 0.999 3 29 hm5C_associated_SNPs_41493 0 0 1 0 1 PSMD3 chr17:38142965 5'GT 38142965 Upstream 32bp
chr2 152276748 152276748 1 + G T UCEC 152276742 + 152276722 152276762 41 AATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAACTGG AATTCAAATGGGAGAAGAGGCAGTGATGTGGGCAAAACTGG < 41bp 1 0.341060670776433 1 0.165340811014175 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RIF1 ENSG00000080345 CDS Human protein_coding chr2:152276742 chr2:152276748 nonsynonymous SNV 0.999 4 27 hm5C_associated_SNPs_41496 0 0 1 0 1 RIF1 chr2:152276704 3'AG 152276704 Downstream 45bp
chr18 9954096 9954096 1 + G T UCEC 9954099 + 9954079 9954119 41 ACATTCGGATAAACCTGGATCAACCTCAACTGCATCCTTCA ACATTCGGATAAACCTGTATCAACCTCAACTGCATCCTTCA < 41bp 1 0.352313147989922 1 0.362146496772766 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VAPA ENSG00000101558 CDS Human protein_coding chr18:9954099 chr18:9954096 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_41497 0 0 1 0 1 VAPA chr18:9954050 3'AG 9954050 Downstream 47bp
chr9 100773654 100773654 1 + G A UCEC 100773653 + 100773633 100773673 41 GTAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGAGGT GTAGAAGGGGATGAGGACGACAATGAAGTCAGTGAGGAGGT < 41bp 1 0.40013050267634 1 0.316106736660004 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773653 chr9:100773654 nonsynonymous SNV 0.217 0 22 hm5C_associated_SNPs_41498 0 0 1 0 1 ANP32B chr9:100773671 5'GT 100773671 Upstream 18bp
chr9 100773654 100773654 1 + G A UCEC 100773662 + 100773642 100773682 41 GATGAGGACGACGATGAAGTCAGTGAGGAGGTCAGTGCAGC GATGAGGACGACAATGAAGTCAGTGAGGAGGTCAGTGCAGC < 41bp 1 0.606076599473559 1 0.46339163184166 experiment 0.787846801052883 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773662 chr9:100773654 nonsynonymous SNV 0.217 0 13 hm5C_associated_SNPs_41499 0 0 1 0 1 ANP32B chr9:100773671 5'GT 100773671 Upstream 18bp
chr19 36221739 36221739 1 + C T UCEC 36221735 + 36221715 36221755 41 TGGAGGCTGCAGAGGAGAACCAGACCATTGTGCACAGCCCC TGGAGGCTGCAGAGGAGAACCAGATCATTGTGCACAGCCCC < 41bp 1 0.236889769986308 1 0.778967499732971 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36221735 chr19:36221739 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_41500 0 0 1 0 1 KMT2B chr19:36221768 5'GT 36221768 Upstream 30bp
chr7 135312781 135312781 1 + G T UCEC 135312770 + 135312750 135312790 41 TCATCCCTACCCCAGTGGATCGCTACCGCCAGATTCTCCTC TCATCCCTACCCCAGTGGATCGCTACCGCCATATTCTCCTC < 41bp 1 0.517873027044991 1 0.112628638744354 experiment 0.964253945910018 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135312770 chr7:135312781 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_41501 0 0 1 1 2 NUP205 chr7:135312721 3'AG 135312721 Downstream 61bp
chr7 135312781 135312781 1 + G T UCEC 135312770 + 135312750 135312790 41 TCATCCCTACCCCAGTGGATCGCTACCGCCAGATTCTCCTC TCATCCCTACCCCAGTGGATCGCTACCGCCATATTCTCCTC < 41bp 1 0.517873027044991 1 0.112628638744354 experiment 0.964253945910018 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135312770 chr7:135312781 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_41501 0 0 1 1 2 NUP205 chr7:135312859 5'GT 135312859 Upstream 79bp
chr6 52288771 52288771 1 + C T UCEC 52288769 + 52288749 52288789 41 AGCCTTCCACAGAAGTCAGACGCTGAGCTACAGGAACGGCT AGCCTTCCACAGAAGTCAGACGTTGAGCTACAGGAACGGCT < 41bp 1 0.0966332022111796 1 0.178291618824005 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52288769 chr6:52288771 synonymous SNV . 0 23 hm5C_associated_SNPs_41503 0 0 1 0 1 EFHC1 chr6:52288744 3'AG 52288744 Downstream 28bp
chrX 69639612 69639612 1 + C A UCEC 69639607 + 69639587 69639627 41 CAGGATTGAGCTTCTTTAATCCCGTCTGTGCCACCCCCAAT CAGGATTGAGCTTCTTTAATCCCGTATGTGCCACCCCCAAT < 41bp 1 0.446331024736061 1 0.223783195018768 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639607 chrX:69639612 synonymous SNV . 0 26 hm5C_associated_SNPs_41504 0 0 1 0 1 KIF4A chrX:69639633 5'GT 69639633 Upstream 22bp
chr11 117152347 117152347 1 + G T UCEC 117152351 + 117152331 117152371 41 CATATCCAGTTAGTGAGGAACGGAGCCAAGCTGAGCAGCCT CATATCCAGTTAGTGATGAACGGAGCCAAGCTGAGCAGCCT < 41bp 1 0.635386105857949 1 0.797691166400909 experiment 0.729227788284102 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152351 chr11:117152347 nonsynonymous SNV 0.994 4 17 hm5C_associated_SNPs_41505 0 0 1 0 2 RNF214 chr11:117152316 3'AG 117152316 Downstream 32bp
chr11 117152347 117152347 1 + G T UCEC 117152351 + 117152331 117152371 41 CATATCCAGTTAGTGAGGAACGGAGCCAAGCTGAGCAGCCT CATATCCAGTTAGTGATGAACGGAGCCAAGCTGAGCAGCCT < 41bp 1 0.635386105857949 1 0.797691166400909 experiment 0.729227788284102 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152351 chr11:117152347 nonsynonymous SNV 0.994 4 17 hm5C_associated_SNPs_41505 0 0 1 0 2 RNF214 chr11:117152414 5'GT 117152414 Upstream 68bp
chr8 9620705 9620705 1 + T G UCEC 9620699 + 9620679 9620719 41 TCACTGTGTTAATCAGGGAACGATTTTGCTGGATCTTGCTC TCACTGTGTTAATCAGGGAACGATTTGGCTGGATCTTGCTC < 41bp 1 0.0767680250466029 1 0.0632745325565338 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TNKS ENSG00000173273 CDS Human protein_coding chr8:9620699 chr8:9620705 nonsynonymous SNV 0.999 4 27 hm5C_associated_SNPs_41507 0 0 1 0 2 TNKS chr8:9620657 3'AG 9620657 Downstream 49bp
chr8 9620705 9620705 1 + T G UCEC 9620699 + 9620679 9620719 41 TCACTGTGTTAATCAGGGAACGATTTTGCTGGATCTTGCTC TCACTGTGTTAATCAGGGAACGATTTGGCTGGATCTTGCTC < 41bp 1 0.0767680250466029 1 0.0632745325565338 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TNKS ENSG00000173273 CDS Human protein_coding chr8:9620699 chr8:9620705 nonsynonymous SNV 0.999 4 27 hm5C_associated_SNPs_41507 0 0 1 0 2 TNKS chr8:9620754 5'GT 9620754 Upstream 50bp
chr3 47455570 47455570 1 - C A UCEC 47455586 - 47455566 47455606 41 CATGTCCTTGCCTCCAGGACCTGGGCTGTGGTGCAAGCTTG CATGTCCTTGCCTCCAGGACCTGGGCTGTGGTGCAATCTTG < 41bp 1 0.451896587679536 1 0.17934250831604 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SCAP ENSG00000114650 CDS Human protein_coding chr3:47455586 chr3:47455570 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_41508 0 0 1 0 1 SCAP chr3:47455589 3'AG 47455589 Downstream 20bp
chr16 23578376 23578376 1 + G A UCEC 23578358 + 23578338 23578378 41 TAAAAAATGTGGTCAGTGAACCTATCGAAGGACATGAAGAC TAAAAAATGTGGTCAGTGAACCTATCGAAGGACATGAAAAC < 41bp 1 0.0644901525343829 1 0.0718959867954254 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBFD1 ENSG00000103353 CDS Human protein_coding chr16:23578358 chr16:23578376 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_41509 0 0 1 0 2 UBFD1 chr16:23578308 3'AG 23578308 Downstream 69bp
chr16 23578376 23578376 1 + G A UCEC 23578358 + 23578338 23578378 41 TAAAAAATGTGGTCAGTGAACCTATCGAAGGACATGAAGAC TAAAAAATGTGGTCAGTGAACCTATCGAAGGACATGAAAAC < 41bp 1 0.0644901525343829 1 0.0718959867954254 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBFD1 ENSG00000103353 CDS Human protein_coding chr16:23578358 chr16:23578376 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_41509 0 0 1 0 2 UBFD1 chr16:23578390 5'GT 23578390 Upstream 15bp
chr10 102824017 102824017 1 + G T UCEC 102824020 + 102824000 102824040 41 TCCCGCCTTCACCCCCAGGGCCCCAGATCGTGTCACATCCA TCCCGCCTTCACCCCCATGGCCCCAGATCGTGTCACATCCA < 41bp 1 0.263681990438085 1 0.264147460460663 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1;KAZALD1 ENSG00000107821 splicing Human protein_coding chr10:102824020 chr10:102824017 . 0.915 0 18 hm5C_associated_SNPs_41510 0 0 1 0 1 KAZALD1 chr10:102823963 3'AG 102823963 Downstream 55bp
chr10 102824017 102824017 1 + G T UCEC 102824021 + 102824001 102824041 41 CCCGCCTTCACCCCCAGGGCCCCAGATCGTGTCACATCCAT CCCGCCTTCACCCCCATGGCCCCAGATCGTGTCACATCCAT < 41bp 1 0.0950208412253789 1 0.0942524671554565 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1;KAZALD1 ENSG00000107821 splicing Human protein_coding chr10:102824021 chr10:102824017 . 0.915 0 17 hm5C_associated_SNPs_41511 0 0 1 0 1 KAZALD1 chr10:102823963 3'AG 102823963 Downstream 55bp
chr10 102824017 102824017 1 + G T UCEC 102824022 + 102824002 102824042 41 CCGCCTTCACCCCCAGGGCCCCAGATCGTGTCACATCCATA CCGCCTTCACCCCCATGGCCCCAGATCGTGTCACATCCATA < 41bp 1 0.142662312739317 1 0.0928701758384705 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1;KAZALD1 ENSG00000107821 splicing Human protein_coding chr10:102824022 chr10:102824017 . 0.915 0 16 hm5C_associated_SNPs_41512 0 0 1 0 1 KAZALD1 chr10:102823963 3'AG 102823963 Downstream 55bp
chr10 102824017 102824017 1 + G T UCEC 102824023 + 102824003 102824043 41 CGCCTTCACCCCCAGGGCCCCAGATCGTGTCACATCCATAT CGCCTTCACCCCCATGGCCCCAGATCGTGTCACATCCATAT < 41bp 1 0.111565092984114 1 0.401343286037445 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1;KAZALD1 ENSG00000107821 splicing Human protein_coding chr10:102824023 chr10:102824017 . 0.915 0 15 hm5C_associated_SNPs_41513 0 0 1 0 1 KAZALD1 chr10:102823963 3'AG 102823963 Downstream 55bp
chr10 104160804 104160804 1 + C A UCEC 104160790 + 104160770 104160810 41 GGGTACCCGACCCTCACCCGCCTCCTTCTGAAGGCTGGTCA GGGTACCCGACCCTCACCCGCCTCCTTCTGAAGGATGGTCA < 41bp 1 0.0401646063845159 1 0.225600630044937 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160790 chr10:104160804 nonsynonymous SNV 0.993 2 35 hm5C_associated_SNPs_41515 0 0 0 0 1 NFKB2 chr10:104160806 5'GT 104160806 Upstream 3bp
chr3 126751369 126751369 1 + C A UCEC 126751389 + 126751369 126751409 41 CTGGGCAAGGACTCACCCTCCAACAAGCTGCTCTACGCCAA ATGGGCAAGGACTCACCCTCCAACAAGCTGCTCTACGCCAA < 41bp 1 0.478820565841458 1 0.649330139160156 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126751389 chr3:126751369 nonsynonymous SNV 0.996 4 1 hm5C_associated_SNPs_41516 0 0 1 0 1 PLXNA1 chr3:126751442 5'GT 126751442 Upstream 74bp
chr8 22054866 22054866 1 + C T UCEC 22054853 + 22054833 22054873 41 GAAGCCCGAGGTCATCACCTCCCAGTACAACAACATGCGCG GAAGCCCGAGGTCATCACCTCCCAGTACAACAATATGCGCG < 41bp 1 0.140815417231682 1 0.283278346061707 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22054853 chr8:22054866 synonymous SNV . 0 34 hm5C_associated_SNPs_41517 0 0 1 0 1 BMP1 chr8:22054933 5'GT 22054933 Upstream 68bp
chr19 39215182 39215182 1 + C T UCEC 39215163 + 39215143 39215183 41 CTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC CTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGTC < 41bp 1 0.327541380741471 1 0.715404391288757 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215163 chr19:39215182 nonsynonymous SNV 0.997 0 40 hm5C_associated_SNPs_41518 0 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 24bp
chr19 39215182 39215182 1 + C T UCEC 39215169 + 39215149 39215189 41 CGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCCCTGGAT CGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGTCCTGGAT < 41bp 1 0.250810070965464 1 0.0405273735523224 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215169 chr19:39215182 nonsynonymous SNV 0.997 0 34 hm5C_associated_SNPs_41519 0 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 24bp
chr19 39215182 39215182 1 + C T UCEC 39215184 + 39215164 39215204 41 CAGGCCAATGTTGTGGGGCCCTGGATCCAGACCAAGATGGA CAGGCCAATGTTGTGGGGTCCTGGATCCAGACCAAGATGGA < 41bp 1 0.706225912901214 1 0.695255100727081 experiment 0.587548174197573 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215184 chr19:39215182 nonsynonymous SNV 0.997 0 19 hm5C_associated_SNPs_41520 0 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 24bp
chr19 39215182 39215182 1 + C T UCEC 39215191 + 39215171 39215211 41 ATGTTGTGGGGCCCTGGATCCAGACCAAGATGGAGGTGAGG ATGTTGTGGGGTCCTGGATCCAGACCAAGATGGAGGTGAGG < 41bp 1 0.190237284116017 1 0.488530874252319 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215191 chr19:39215182 nonsynonymous SNV 0.997 0 12 hm5C_associated_SNPs_41521 0 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 24bp
chr19 39215182 39215182 1 + C T UCEC 39215195 + 39215175 39215215 41 TGTGGGGCCCTGGATCCAGACCAAGATGGAGGTGAGGCACG TGTGGGGTCCTGGATCCAGACCAAGATGGAGGTGAGGCACG < 41bp 1 0.319047119889314 1 0.499410271644592 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215195 chr19:39215182 nonsynonymous SNV 0.997 0 8 hm5C_associated_SNPs_41522 0 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 24bp
chr19 39215182 39215182 1 + C T UCEC 39215196 + 39215176 39215216 41 GTGGGGCCCTGGATCCAGACCAAGATGGAGGTGAGGCACGG GTGGGGTCCTGGATCCAGACCAAGATGGAGGTGAGGCACGG < 41bp 1 0.798143814769204 1 0.365390837192535 experiment 0.403712370461591 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215196 chr19:39215182 nonsynonymous SNV 0.997 0 7 hm5C_associated_SNPs_41523 0 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 24bp
chr14 102478270 102478270 1 + C T UCEC 102478250 + 102478230 102478270 41 ATCACCCAGATCAATCATGGCCTGATGATGGTGGGGCCCTC ATCACCCAGATCAATCATGGCCTGATGATGGTGGGGCCCTT < 41bp 1 0.0903699340929641 1 0.0648582577705383 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478250 chr14:102478270 nonsynonymous SNV 0.994 4 41 hm5C_associated_SNPs_41525 0 0 1 0 1 DYNC1H1 chr14:102478212 3'AG 102478212 Downstream 59bp
chr14 102478270 102478270 1 + C T UCEC 102478266 + 102478246 102478286 41 ATGGCCTGATGATGGTGGGGCCCTCGGGAAGTGGGAAGAGC ATGGCCTGATGATGGTGGGGCCCTTGGGAAGTGGGAAGAGC < 41bp 1 0.0134554029229877 1 0.0578262209892273 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478266 chr14:102478270 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_41526 0 0 1 0 1 DYNC1H1 chr14:102478212 3'AG 102478212 Downstream 59bp
chr14 102478270 102478270 1 + C T UCEC 102478267 + 102478247 102478287 41 TGGCCTGATGATGGTGGGGCCCTCGGGAAGTGGGAAGAGCA TGGCCTGATGATGGTGGGGCCCTTGGGAAGTGGGAAGAGCA < 41bp 1 0.0115974222937665 1 0.0935302972793579 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478267 chr14:102478270 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_41527 0 0 1 0 1 DYNC1H1 chr14:102478212 3'AG 102478212 Downstream 59bp
chr15 63128200 63128200 1 + T G UCEC 63128184 + 63128164 63128204 41 GGAGAAGCTCATCTCATCTGCCAAGCAGGTCGCCGCTTCCA GGAGAAGCTCATCTCATCTGCCAAGCAGGTCGCCGCGTCCA < 41bp 1 0.0725863744594644 1 0.314773499965668 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63128184 chr15:63128200 synonymous SNV . 0 37 hm5C_associated_SNPs_41528 0 0 0 0 1 TLN2 chr15:63128272 5'GT 63128272 Upstream 73bp
chr7 5643504 5643504 1 + G T UCEC 5643505 + 5643485 5643525 41 CTGGGACAGGGGACTCAGAGCTCTTCCTCATGAAGCTCATC CTGGGACAGGGGACTCAGATCTCTTCCTCATGAAGCTCATC < 41bp 1 0.174449142222863 1 0.199699729681015 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5643505 chr7:5643504 nonsynonymous SNV 0.532 2 20 hm5C_associated_SNPs_41529 0 0 1 0 1 FSCN1 chr7:5643494 3'AG 5643494 Downstream 11bp
chr7 5643504 5643504 1 + G T UCEC 5643510 + 5643490 5643530 41 ACAGGGGACTCAGAGCTCTTCCTCATGAAGCTCATCAACCG ACAGGGGACTCAGATCTCTTCCTCATGAAGCTCATCAACCG < 41bp 1 0.349541277140407 1 0.11724391579628 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5643510 chr7:5643504 nonsynonymous SNV 0.532 2 15 hm5C_associated_SNPs_41530 0 0 1 0 1 FSCN1 chr7:5643494 3'AG 5643494 Downstream 11bp
chr20 30898889 30898889 1 + G T UCEC 30898904 + 30898884 30898924 41 TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGAGAAA TTGCATAGGAGAAGATGAGGCTGCTGAAGGAGAAAGAGAAA < 41bp 1 0.479876882840627 1 0.187575042247772 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF3B ENSG00000101350;ENSG00000101350 exonic;splicing Human protein_coding chr20:30898904 chr20:30898889 stopgain 1.000 1 6 hm5C_associated_SNPs_41531 0 0 1 0 2 KIF3B chr20:30898832 3'AG 30898832 Downstream 58bp
chr20 30898889 30898889 1 + G T UCEC 30898904 + 30898884 30898924 41 TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGAGAAA TTGCATAGGAGAAGATGAGGCTGCTGAAGGAGAAAGAGAAA < 41bp 1 0.479876882840627 1 0.187575042247772 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF3B ENSG00000101350;ENSG00000101350 exonic;splicing Human protein_coding chr20:30898904 chr20:30898889 stopgain 1.000 1 6 hm5C_associated_SNPs_41531 0 0 1 0 2 KIF3B chr20:30898984 5'GT 30898984 Upstream 96bp
chr9 131247129 131247129 1 + G A UCEC 131247109 + 131247089 131247129 41 CCATCCGAGCCCAGAAGGAGCGAGCCGAGAAGAGCGAGGAG CCATCCGAGCCCAGAAGGAGCGAGCCGAGAAGAGCGAGGAA < 41bp 1 0.415173258826971 1 0.490970343351364 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ODF2 ENSG00000136811 CDS Human protein_coding chr9:131247109 chr9:131247129 synonymous SNV . 0 41 hm5C_associated_SNPs_41532 0 0 1 0 1 ODF2 chr9:131247165 5'GT 131247165 Upstream 37bp
chr22 23615307 23615307 1 + C T UCEC 23615317 + 23615297 23615337 41 ACGAGGAGCACGCTGGTCCTCCATGTAAGTCACAGCGCCCC ACGAGGAGCATGCTGGTCCTCCATGTAAGTCACAGCGCCCC < 41bp 1 0.186510761466516 1 0.0942659974098206 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23615317 chr22:23615307 nonsynonymous SNV 0.856 4 11 hm5C_associated_SNPs_41533 0 0 1 0 2 BCR chr22:23615268 3'AG 23615268 Downstream 40bp
chr22 23615307 23615307 1 + C T UCEC 23615317 + 23615297 23615337 41 ACGAGGAGCACGCTGGTCCTCCATGTAAGTCACAGCGCCCC ACGAGGAGCATGCTGGTCCTCCATGTAAGTCACAGCGCCCC < 41bp 1 0.186510761466516 1 0.0942659974098206 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23615317 chr22:23615307 nonsynonymous SNV 0.856 4 11 hm5C_associated_SNPs_41533 0 0 1 0 2 BCR chr22:23615320 5'GT 23615320 Upstream 14bp
chr16 28994592 28994592 1 + G A UCEC 28994609 + 28994589 28994629 41 GGAGCCCCTACCTCATTGGCCTGGTGAGCATTATTTCTTGG GGAACCCCTACCTCATTGGCCTGGTGAGCATTATTTCTTGG < 41bp 1 0.489043440437069 1 0.0635210871696472 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28994609 chr16:28994592 nonsynonymous SNV 0.998 4 4 hm5C_associated_SNPs_41534 0 0 1 0 2 SPNS1 chr16:28994513 3'AG 28994513 Downstream 80bp
chr16 28994592 28994592 1 + G A UCEC 28994609 + 28994589 28994629 41 GGAGCCCCTACCTCATTGGCCTGGTGAGCATTATTTCTTGG GGAACCCCTACCTCATTGGCCTGGTGAGCATTATTTCTTGG < 41bp 1 0.489043440437069 1 0.0635210871696472 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28994609 chr16:28994592 nonsynonymous SNV 0.998 4 4 hm5C_associated_SNPs_41534 0 0 1 0 2 SPNS1 chr16:28994611 5'GT 28994611 Upstream 20bp
chr1 12027052 12027052 1 + G A UCEC 12027067 + 12027047 12027087 41 TGCCCGGATGTCTATTGGTTCCCCATCTTCACGGAGGTGGC TGCCCAGATGTCTATTGGTTCCCCATCTTCACGGAGGTGGC < 41bp 1 0.476372298031344 1 0.0927470624446869 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027067 chr1:12027052 synonymous SNV . 0 6 hm5C_associated_SNPs_41535 0 0 1 0 2 PLOD1 chr1:12027044 3'AG 12027044 Downstream 9bp
chr1 12027052 12027052 1 + G A UCEC 12027067 + 12027047 12027087 41 TGCCCGGATGTCTATTGGTTCCCCATCTTCACGGAGGTGGC TGCCCAGATGTCTATTGGTTCCCCATCTTCACGGAGGTGGC < 41bp 1 0.476372298031344 1 0.0927470624446869 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027067 chr1:12027052 synonymous SNV . 0 6 hm5C_associated_SNPs_41535 0 0 1 0 2 PLOD1 chr1:12027148 5'GT 12027148 Upstream 97bp
chrX 69370137 69370137 1 + C T UCEC 69370124 + 69370104 69370144 41 GTGACTGGTATGAGCAACATCGGAAATATGGAGCATTACCG GTGACTGGTATGAGCAACATCGGAAATATGGAGTATTACCG < 41bp 1 0.787772664212306 1 0.405177175998688 experiment 0.424454671575388 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69370124 chrX:69370137 nonsynonymous SNV 0.989 0 34 hm5C_associated_SNPs_41536 0 0 1 0 1 IGBP1 chrX:69370172 5'GT 69370172 Upstream 36bp
chr2 101622439 101622439 1 + C T UCEC 101622446 + 101622426 101622466 41 TGCCATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAAT TGCCATACCGAATTCGTGTGCGGCTGTCCAGAAAACGTAAT < 41bp 1 0.625927724677077 1 0.229960590600967 experiment 0.748144550645846 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622446 chr2:101622439 synonymous SNV . 0 14 hm5C_associated_SNPs_41537 0 0 1 0 2 RPL31 chr2:101622421 3'AG 101622421 Downstream 19bp
chr2 101622439 101622439 1 + C T UCEC 101622446 + 101622426 101622466 41 TGCCATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAAT TGCCATACCGAATTCGTGTGCGGCTGTCCAGAAAACGTAAT < 41bp 1 0.625927724677077 1 0.229960590600967 experiment 0.748144550645846 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622446 chr2:101622439 synonymous SNV . 0 14 hm5C_associated_SNPs_41537 0 0 1 0 2 RPL31 chr2:101622533 5'GT 101622533 Upstream 95bp
chr2 101622439 101622439 1 + C T UCEC 101622449 + 101622429 101622469 41 CATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAG CATACCGAATTCGTGTGCGGCTGTCCAGAAAACGTAATGAG < 41bp 1 0.190985522832527 1 0.235334932804108 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622449 chr2:101622439 synonymous SNV . 0 11 hm5C_associated_SNPs_41538 0 0 1 0 2 RPL31 chr2:101622421 3'AG 101622421 Downstream 19bp
chr2 101622439 101622439 1 + C T UCEC 101622449 + 101622429 101622469 41 CATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAG CATACCGAATTCGTGTGCGGCTGTCCAGAAAACGTAATGAG < 41bp 1 0.190985522832527 1 0.235334932804108 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622449 chr2:101622439 synonymous SNV . 0 11 hm5C_associated_SNPs_41538 0 0 1 0 2 RPL31 chr2:101622533 5'GT 101622533 Upstream 95bp
chr2 101622439 101622439 1 + C T UCEC 101622453 + 101622433 101622473 41 CCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGGATG CCGAATTCGTGTGCGGCTGTCCAGAAAACGTAATGAGGATG < 41bp 1 0.724619386552603 1 0.776577472686768 experiment 0.550761226894795 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622453 chr2:101622439 synonymous SNV . 0 7 hm5C_associated_SNPs_41539 0 0 1 0 2 RPL31 chr2:101622421 3'AG 101622421 Downstream 19bp
chr2 101622439 101622439 1 + C T UCEC 101622453 + 101622433 101622473 41 CCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGGATG CCGAATTCGTGTGCGGCTGTCCAGAAAACGTAATGAGGATG < 41bp 1 0.724619386552603 1 0.776577472686768 experiment 0.550761226894795 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622453 chr2:101622439 synonymous SNV . 0 7 hm5C_associated_SNPs_41539 0 0 1 0 2 RPL31 chr2:101622533 5'GT 101622533 Upstream 95bp
chr1 97771762 97771762 1 - A C UCEC 97771744 - 97771724 97771764 41 TATTGTGAGCATCGCAAGAGCTGCAAAGGAAGGTAAGAACT TAGTGTGAGCATCGCAAGAGCTGCAAAGGAAGGTAAGAACT < 41bp 1 0.586650520012917 1 0.47221451997757 experiment 0.826698959974167 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPYD ENSG00000188641 CDS Human protein_coding chr1:97771744 chr1:97771762 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_41540 0 0 0 0 2 DPYD chr1:97771733 5'GT 97771733 Upstream 30bp
chr1 97771762 97771762 1 - A C UCEC 97771744 - 97771724 97771764 41 TATTGTGAGCATCGCAAGAGCTGCAAAGGAAGGTAAGAACT TAGTGTGAGCATCGCAAGAGCTGCAAAGGAAGGTAAGAACT < 41bp 1 0.586650520012917 1 0.47221451997757 experiment 0.826698959974167 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPYD ENSG00000188641 CDS Human protein_coding chr1:97771744 chr1:97771762 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_41540 0 0 0 0 2 DPYD chr1:97771853 3'AG 97771853 Downstream 92bp
chr4 1017640 1017640 1 + C T UCEC 1017627 + 1017607 1017647 41 CGACCGCGCTTCACACAGCCCTCCAAGATGAGGCGCCGGGT CGACCGCGCTTCACACAGCCCTCCAAGATGAGGTGCCGGGT < 41bp 1 0.709959694120539 1 0.965886473655701 experiment 0.580080611758922 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control FGFRL1 ENSG00000127418 CDS Human protein_coding chr4:1017627 chr4:1017640 nonsynonymous SNV 0.998 4 34 hm5C_associated_SNPs_41541 0 0 1 0 1 FGFRL1 chr4:1017605 3'AG 1017605 Downstream 36bp
chr1 39906770 39906770 1 + G A UCEC 39906771 + 39906751 39906791 41 CCTGTGGAGAAACTGAGAAGCCTGAAGTGAGGAAGAGCATT CCTGTGGAGAAACTGAGAAACCTGAAGTGAGGAAGAGCATT < 41bp 1 0.092338135608768 1 0.126137107610703 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39906771 chr1:39906770 synonymous SNV . 0 20 hm5C_associated_SNPs_41542 0 0 1 0 2 MACF1 chr1:39906675 3'AG 39906675 Downstream 96bp
chr1 39906770 39906770 1 + G A UCEC 39906771 + 39906751 39906791 41 CCTGTGGAGAAACTGAGAAGCCTGAAGTGAGGAAGAGCATT CCTGTGGAGAAACTGAGAAACCTGAAGTGAGGAAGAGCATT < 41bp 1 0.092338135608768 1 0.126137107610703 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39906771 chr1:39906770 synonymous SNV . 0 20 hm5C_associated_SNPs_41542 0 0 1 0 2 MACF1 chr1:39906797 5'GT 39906797 Upstream 28bp
chr1 39906770 39906770 1 + G A UCEC 39906772 + 39906752 39906792 41 CTGTGGAGAAACTGAGAAGCCTGAAGTGAGGAAGAGCATTG CTGTGGAGAAACTGAGAAACCTGAAGTGAGGAAGAGCATTG < 41bp 1 0.346439260792863 1 0.26474791765213 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39906772 chr1:39906770 synonymous SNV . 0 19 hm5C_associated_SNPs_41543 0 0 1 0 2 MACF1 chr1:39906675 3'AG 39906675 Downstream 96bp
chr1 39906770 39906770 1 + G A UCEC 39906772 + 39906752 39906792 41 CTGTGGAGAAACTGAGAAGCCTGAAGTGAGGAAGAGCATTG CTGTGGAGAAACTGAGAAACCTGAAGTGAGGAAGAGCATTG < 41bp 1 0.346439260792863 1 0.26474791765213 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39906772 chr1:39906770 synonymous SNV . 0 19 hm5C_associated_SNPs_41543 0 0 1 0 2 MACF1 chr1:39906797 5'GT 39906797 Upstream 28bp
chr1 120286594 120286594 1 + C A UCEC 120286596 + 120286576 120286616 41 CTGGCACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCTGG CTGGCACGTCATGGGCATATCCTCCTTGCTGCCCAGCCTGG < 41bp 1 0.15156096051655 1 0.112613141536713 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286596 chr1:120286594 synonymous SNV . 0 19 hm5C_associated_SNPs_41544 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 86bp
chr1 120286594 120286594 1 + C A UCEC 120286597 + 120286577 120286617 41 TGGCACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCTGGA TGGCACGTCATGGGCATATCCTCCTTGCTGCCCAGCCTGGA < 41bp 1 0.659426663158052 1 0.42692819237709 experiment 0.681146673683895 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286597 chr1:120286594 synonymous SNV . 0 18 hm5C_associated_SNPs_41545 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 86bp
chr1 120286594 120286594 1 + C A UCEC 120286600 + 120286580 120286620 41 CACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCTGGAAGC CACGTCATGGGCATATCCTCCTTGCTGCCCAGCCTGGAAGC < 41bp 1 0.34912027650629 1 0.23743525147438 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286600 chr1:120286594 synonymous SNV . 0 15 hm5C_associated_SNPs_41546 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 86bp
chr2 202141596 202141596 1 + G A UCEC 202141594 + 202141574 202141614 41 AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAATCA AAAAGCAAACCTCGGGGATACTATCTGATCATCAACAATCA < 41bp 1 0.197487107734519 1 0.22907418012619 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CASP8 ENSG00000064012 CDS Human protein_coding chr2:202141594 chr2:202141596 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_41547 0 0 1 1 1 CASP8 chr2:202141550 3'AG 202141550 Downstream 47bp
chr17 37814072 37814072 1 + C T UCEC 37814079 + 37814059 37814099 41 TCCTAGGCTATGCCGTGCTGCGGCTCCGGCACTGGTGGGTG TCCTAGGCTATGCTGTGCTGCGGCTCCGGCACTGGTGGGTG < 41bp 1 0.437839102278451 1 0.447749257087708 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STARD3 ENSG00000131748 CDS Human protein_coding chr17:37814079 chr17:37814072 synonymous SNV . 0 14 hm5C_associated_SNPs_41548 0 0 1 0 3 STARD3 chr17:37814028 3'AG 37814028 Downstream 45bp
chr17 37814072 37814072 1 + C T UCEC 37814079 + 37814059 37814099 41 TCCTAGGCTATGCCGTGCTGCGGCTCCGGCACTGGTGGGTG TCCTAGGCTATGCTGTGCTGCGGCTCCGGCACTGGTGGGTG < 41bp 1 0.437839102278451 1 0.447749257087708 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STARD3 ENSG00000131748 CDS Human protein_coding chr17:37814079 chr17:37814072 synonymous SNV . 0 14 hm5C_associated_SNPs_41548 0 0 1 0 3 STARD3 chr17:37814092 5'GT 37814092 Upstream 21bp
chr17 37814072 37814072 1 + C T UCEC 37814079 + 37814059 37814099 41 TCCTAGGCTATGCCGTGCTGCGGCTCCGGCACTGGTGGGTG TCCTAGGCTATGCTGTGCTGCGGCTCCGGCACTGGTGGGTG < 41bp 1 0.437839102278451 1 0.447749257087708 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STARD3 ENSG00000131748 CDS Human protein_coding chr17:37814079 chr17:37814072 synonymous SNV . 0 14 hm5C_associated_SNPs_41548 0 0 1 0 3 STARD3 chr17:37814105 5'GT 37814105 Upstream 34bp
chr7 66563552 66563552 1 + G A UCEC 66563534 + 66563514 66563554 41 ACTGTATTCTCCAGGAGTACCGGGCGTCAAAGCAGAACGCT ACTGTATTCTCCAGGAGTACCGGGCGTCAAAGCAGAACACT < 41bp 1 0.689698790840861 1 0.881344139575958 experiment 0.620602418318279 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66563534 chr7:66563552 nonsynonymous SNV 0.196 3 39 hm5C_associated_SNPs_41549 0 0 0 0 1 TYW1 chr7:66563528 3'AG 66563528 Downstream 25bp
chr1 984707 984707 1 + C T UCEC 984697 + 984677 984717 41 TGGCACCGCCTGGAGCTGTCCCGGCACTGGCGCCGGGGCAC TGGCACCGCCTGGAGCTGTCCCGGCACTGGTGCCGGGGCAC < 41bp 1 0.232332407778236 1 0.721747994422913 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984697 chr1:984707 nonsynonymous SNV 0.459 1 31 hm5C_associated_SNPs_41551 0 0 1 0 1 AGRN chr1:984616 3'AG 984616 Downstream 92bp
chr1 984707 984707 1 + C T UCEC 984698 + 984678 984718 41 GGCACCGCCTGGAGCTGTCCCGGCACTGGCGCCGGGGCACC GGCACCGCCTGGAGCTGTCCCGGCACTGGTGCCGGGGCACC < 41bp 1 0.721818001441729 1 0.877903580665588 experiment 0.556363997116542 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984698 chr1:984707 nonsynonymous SNV 0.459 1 30 hm5C_associated_SNPs_41552 0 0 1 0 1 AGRN chr1:984616 3'AG 984616 Downstream 92bp
chr1 984707 984707 1 + C T UCEC 984701 + 984681 984721 41 ACCGCCTGGAGCTGTCCCGGCACTGGCGCCGGGGCACCCTC ACCGCCTGGAGCTGTCCCGGCACTGGTGCCGGGGCACCCTC < 41bp 1 0.324572393569537 1 0.468052566051483 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984701 chr1:984707 nonsynonymous SNV 0.459 1 27 hm5C_associated_SNPs_41553 0 0 1 0 1 AGRN chr1:984616 3'AG 984616 Downstream 92bp
chr1 984707 984707 1 + C T UCEC 984709 + 984689 984729 41 GAGCTGTCCCGGCACTGGCGCCGGGGCACCCTCTCGGTGGA GAGCTGTCCCGGCACTGGTGCCGGGGCACCCTCTCGGTGGA < 41bp 1 0.404431015746866 1 0.739206552505493 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984709 chr1:984707 nonsynonymous SNV 0.459 1 19 hm5C_associated_SNPs_41554 0 0 1 0 1 AGRN chr1:984616 3'AG 984616 Downstream 92bp
chr1 984707 984707 1 + C T UCEC 984710 + 984690 984730 41 AGCTGTCCCGGCACTGGCGCCGGGGCACCCTCTCGGTGGAT AGCTGTCCCGGCACTGGTGCCGGGGCACCCTCTCGGTGGAT < 41bp 1 0.613673980765634 1 0.879595994949341 experiment 0.772652038468732 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984710 chr1:984707 nonsynonymous SNV 0.459 1 18 hm5C_associated_SNPs_41555 0 0 1 0 1 AGRN chr1:984616 3'AG 984616 Downstream 92bp
chr11 722469 722469 1 + C A UCEC 722478 + 722458 722498 41 TCCCGAGATGCCGTGGACTTCCTGCGCGGCCACCTGGTCCC TCCCGAGATGCAGTGGACTTCCTGCGCGGCCACCTGGTCCC < 41bp 1 0.230683680202474 1 0.151110678911209 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722478 chr11:722469 nonsynonymous SNV . 0 12 hm5C_associated_SNPs_41557 0 0 1 0 2 EPS8L2 chr11:722401 3'AG 722401 Downstream 69bp
chr11 722469 722469 1 + C A UCEC 722478 + 722458 722498 41 TCCCGAGATGCCGTGGACTTCCTGCGCGGCCACCTGGTCCC TCCCGAGATGCAGTGGACTTCCTGCGCGGCCACCTGGTCCC < 41bp 1 0.230683680202474 1 0.151110678911209 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722478 chr11:722469 nonsynonymous SNV . 0 12 hm5C_associated_SNPs_41557 0 0 1 0 2 EPS8L2 chr11:722549 5'GT 722549 Upstream 81bp
chr8 22429249 22429249 1 + C A UCEC 22429234 + 22429214 22429254 41 TTCCTGTCAACTCCCAGAATCTTGGCACCCCTGGTCCAGCT TTCCTGTCAACTCCCAGAATCTTGGCACCCCTGGTACAGCT < 41bp 1 0.239698286459881 1 0.301255732774734 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22429234 chr8:22429249 nonsynonymous SNV 0.002 0 36 hm5C_associated_SNPs_41559 0 0 1 0 2 SORBS3 chr8:22429231 3'AG 22429231 Downstream 19bp
chr8 22429249 22429249 1 + C A UCEC 22429234 + 22429214 22429254 41 TTCCTGTCAACTCCCAGAATCTTGGCACCCCTGGTCCAGCT TTCCTGTCAACTCCCAGAATCTTGGCACCCCTGGTACAGCT < 41bp 1 0.239698286459881 1 0.301255732774734 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22429234 chr8:22429249 nonsynonymous SNV 0.002 0 36 hm5C_associated_SNPs_41559 0 0 1 0 2 SORBS3 chr8:22429334 5'GT 22429334 Upstream 86bp
chrX 107821186 107821186 1 + C A UCEC 107821198 + 107821178 107821218 41 TTAGGGCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGG TTAGGGCCATCCTGGTCCACCAGGACTTCCAGGACCTAAGG < 41bp 1 0.47631048631492 1 0.518548369407654 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107821198 chrX:107821186 nonsynonymous SNV 0.982 2 9 hm5C_associated_SNPs_41562 0 0 1 0 2 COL4A5 chrX:107821182 3'AG 107821182 Downstream 5bp
chrX 107821186 107821186 1 + C A UCEC 107821198 + 107821178 107821218 41 TTAGGGCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGG TTAGGGCCATCCTGGTCCACCAGGACTTCCAGGACCTAAGG < 41bp 1 0.47631048631492 1 0.518548369407654 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107821198 chrX:107821186 nonsynonymous SNV 0.982 2 9 hm5C_associated_SNPs_41562 0 0 1 0 2 COL4A5 chrX:107821217 5'GT 107821217 Upstream 32bp
chrX 107821186 107821186 1 + C A UCEC 107821203 + 107821183 107821223 41 GCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGGTAATT GCCATCCTGGTCCACCAGGACTTCCAGGACCTAAGGTAATT < 41bp 1 0.0324513711327841 1 0.0360987782478333 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107821203 chrX:107821186 nonsynonymous SNV 0.982 2 4 hm5C_associated_SNPs_41563 0 0 1 0 2 COL4A5 chrX:107821182 3'AG 107821182 Downstream 5bp
chrX 107821186 107821186 1 + C A UCEC 107821203 + 107821183 107821223 41 GCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGGTAATT GCCATCCTGGTCCACCAGGACTTCCAGGACCTAAGGTAATT < 41bp 1 0.0324513711327841 1 0.0360987782478333 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107821203 chrX:107821186 nonsynonymous SNV 0.982 2 4 hm5C_associated_SNPs_41563 0 0 1 0 2 COL4A5 chrX:107821217 5'GT 107821217 Upstream 32bp
chr17 4623696 4623696 1 + C T UCEC 4623704 + 4623684 4623724 41 CCAGGGATGTCTCTGTGGAGCTGCCTTTTGTTCTTATGCAC CCAGGGATGTCTTTGTGGAGCTGCCTTTTGTTCTTATGCAC < 41bp 1 0.362235229282773 1 0.0707744657993317 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4623704 chr17:4623696 nonsynonymous SNV 0.992 2 13 hm5C_associated_SNPs_41566 0 0 1 0 2 ARRB2 chr17:4623688 3'AG 4623688 Downstream 9bp
chr17 4623696 4623696 1 + C T UCEC 4623704 + 4623684 4623724 41 CCAGGGATGTCTCTGTGGAGCTGCCTTTTGTTCTTATGCAC CCAGGGATGTCTTTGTGGAGCTGCCTTTTGTTCTTATGCAC < 41bp 1 0.362235229282773 1 0.0707744657993317 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4623704 chr17:4623696 nonsynonymous SNV 0.992 2 13 hm5C_associated_SNPs_41566 0 0 1 0 2 ARRB2 chr17:4623767 5'GT 4623767 Upstream 72bp
chr19 42814476 42814476 1 + C A UCEC 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATAGCACTGATCAAGTCCCAGAGCA < 41bp 1 0.371266800159786 1 0.273140966892242 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814476 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_41567 0 0 0 4 1 PRR19 chr19:42814423 3'AG 42814423 Downstream 54bp
chr19 3533342 3533342 1 + C A UCEC 3533341 + 3533321 3533361 41 GATCCTTGTCTGGAAGTACCCCTCCCTGACCCAGGTGGCCA GATCCTTGTCTGGAAGTACCCATCCCTGACCCAGGTGGCCA < 41bp 1 0.243442436774792 1 0.222057521343231 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3533341 chr19:3533342 synonymous SNV . 0 22 hm5C_associated_SNPs_41568 0 0 1 0 2 FZR1 chr19:3533292 3'AG 3533292 Downstream 51bp
chr19 3533342 3533342 1 + C A UCEC 3533341 + 3533321 3533361 41 GATCCTTGTCTGGAAGTACCCCTCCCTGACCCAGGTGGCCA GATCCTTGTCTGGAAGTACCCATCCCTGACCCAGGTGGCCA < 41bp 1 0.243442436774792 1 0.222057521343231 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3533341 chr19:3533342 synonymous SNV . 0 22 hm5C_associated_SNPs_41568 0 0 1 0 2 FZR1 chr19:3533396 5'GT 3533396 Upstream 55bp
chr20 47691917 47691917 1 + G T UCEC 47691921 + 47691901 47691941 41 ATGCAAGTTTTTTGAGGGACCTGTGACAGGAATCTTCTCTG ATGCAAGTTTTTTGAGTGACCTGTGACAGGAATCTTCTCTG < 41bp 1 0.61715408395591 1 0.256319642066956 experiment 0.765691832088181 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CSE1L ENSG00000124207 CDS Human protein_coding chr20:47691921 chr20:47691917 stopgain 0.994 1 17 hm5C_associated_SNPs_41569 0 0 1 0 1 CSE1L chr20:47691855 3'AG 47691855 Downstream 63bp
chr12 62946735 62946735 1 + G A UCEC 62946733 + 62946713 62946753 41 TAAATAAGGAAGAGGCAGCACAGCAAAAGCAGGCAGAAGAG TAAATAAGGAAGAGGCAGCACAACAAAAGCAGGCAGAAGAG < 41bp 1 0.573573565239011 1 0.457842528820038 experiment 0.852852869521977 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62946733 chr12:62946735 synonymous SNV . 0 23 hm5C_associated_SNPs_41570 0 0 0 0 1 MON2 chr12:62946661 3'AG 62946661 Downstream 75bp
chrX 70779269 70779269 1 + A C UCEC 70779251 + 70779231 70779271 41 CTTATGCAGTCTATTCCAGGCATGCACAATCCTGATAAATT CTTATGCAGTCTATTCCAGGCATGCACAATCCTGATAACTT < 41bp 1 0.0837095008632509 1 0.0560456216335297 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70779251 chrX:70779269 nonsynonymous SNV 0.997 1 39 hm5C_associated_SNPs_41571 0 0 1 0 1 OGT chrX:70779275 5'GT 70779275 Upstream 7bp
chr12 57627877 57627877 1 + G A UCEC 57627865 + 57627845 57627885 41 TTTATAGATGAAGGGGTCAACATTGGCTTAGAGGTGAAGAG TTTATAGATGAAGGGGTCAACATTGGCTTAGAAGTGAAGAG < 41bp 1 0.246316259426188 1 0.17951437830925 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57627865 chr12:57627877 synonymous SNV . 0 33 hm5C_associated_SNPs_41572 0 0 1 0 2 SHMT2 chr12:57627786 3'AG 57627786 Downstream 92bp
chr12 57627877 57627877 1 + G A UCEC 57627865 + 57627845 57627885 41 TTTATAGATGAAGGGGTCAACATTGGCTTAGAGGTGAAGAG TTTATAGATGAAGGGGTCAACATTGGCTTAGAAGTGAAGAG < 41bp 1 0.246316259426188 1 0.17951437830925 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57627865 chr12:57627877 synonymous SNV . 0 33 hm5C_associated_SNPs_41572 0 0 1 0 2 SHMT2 chr12:57627893 5'GT 57627893 Upstream 17bp
chr11 61631197 61631197 1 + G A UCEC 61631203 + 61631183 61631223 41 CAGCCACCTGCAACGTGGAGCAGTCCTTCTTCAACGACTGG CAGCCACCTGCAACATGGAGCAGTCCTTCTTCAACGACTGG < 41bp 1 0.0295662465776557 1 0.300368010997772 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61631203 chr11:61631197 nonsynonymous SNV 0.993 3 15 hm5C_associated_SNPs_41573 0 0 1 0 2 FADS2 chr11:61631179 3'AG 61631179 Downstream 19bp
chr11 61631197 61631197 1 + G A UCEC 61631203 + 61631183 61631223 41 CAGCCACCTGCAACGTGGAGCAGTCCTTCTTCAACGACTGG CAGCCACCTGCAACATGGAGCAGTCCTTCTTCAACGACTGG < 41bp 1 0.0295662465776557 1 0.300368010997772 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61631203 chr11:61631197 nonsynonymous SNV 0.993 3 15 hm5C_associated_SNPs_41573 0 0 1 0 2 FADS2 chr11:61631258 5'GT 61631258 Upstream 62bp
chr7 130021011 130021011 1 + G A UCEC 130021005 + 130020985 130021025 41 AAGGTGAAGGAGCTGGAGGACCTGGAGCACCTGCAGGTCAG AAGGTGAAGGAGCTGGAGGACCTGGAACACCTGCAGGTCAG < 41bp 1 0.405340638648513 1 0.207894921302795 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021005 chr7:130021011 synonymous SNV . 0 27 hm5C_associated_SNPs_41576 0 0 0 0 2 CPA1 chr7:130020939 3'AG 130020939 Downstream 73bp
chr7 130021011 130021011 1 + G A UCEC 130021005 + 130020985 130021025 41 AAGGTGAAGGAGCTGGAGGACCTGGAGCACCTGCAGGTCAG AAGGTGAAGGAGCTGGAGGACCTGGAACACCTGCAGGTCAG < 41bp 1 0.405340638648513 1 0.207894921302795 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021005 chr7:130021011 synonymous SNV . 0 27 hm5C_associated_SNPs_41576 0 0 0 0 2 CPA1 chr7:130021020 5'GT 130021020 Upstream 10bp
chr7 130021011 130021011 1 + G A UCEC 130021012 + 130020992 130021032 41 AGGAGCTGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGG AGGAGCTGGAGGACCTGGAACACCTGCAGGTCAGAAGAGGG < 41bp 1 0.327348117243562 1 0.387093096971512 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021012 chr7:130021011 synonymous SNV . 0 20 hm5C_associated_SNPs_41577 0 0 0 0 2 CPA1 chr7:130020939 3'AG 130020939 Downstream 73bp
chr7 130021011 130021011 1 + G A UCEC 130021012 + 130020992 130021032 41 AGGAGCTGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGG AGGAGCTGGAGGACCTGGAACACCTGCAGGTCAGAAGAGGG < 41bp 1 0.327348117243562 1 0.387093096971512 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021012 chr7:130021011 synonymous SNV . 0 20 hm5C_associated_SNPs_41577 0 0 0 0 2 CPA1 chr7:130021020 5'GT 130021020 Upstream 10bp
chr7 130021011 130021011 1 + G A UCEC 130021014 + 130020994 130021034 41 GAGCTGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGGGA GAGCTGGAGGACCTGGAACACCTGCAGGTCAGAAGAGGGGA < 41bp 1 0.1973896831203 1 0.212895452976227 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021014 chr7:130021011 synonymous SNV . 0 18 hm5C_associated_SNPs_41578 0 0 0 0 2 CPA1 chr7:130020939 3'AG 130020939 Downstream 73bp
chr7 130021011 130021011 1 + G A UCEC 130021014 + 130020994 130021034 41 GAGCTGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGGGA GAGCTGGAGGACCTGGAACACCTGCAGGTCAGAAGAGGGGA < 41bp 1 0.1973896831203 1 0.212895452976227 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021014 chr7:130021011 synonymous SNV . 0 18 hm5C_associated_SNPs_41578 0 0 0 0 2 CPA1 chr7:130021020 5'GT 130021020 Upstream 10bp
chr7 130021011 130021011 1 + G A UCEC 130021018 + 130020998 130021038 41 TGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGGGAGAAG TGGAGGACCTGGAACACCTGCAGGTCAGAAGAGGGGAGAAG < 41bp 1 0.563486301922024 1 0.779494643211365 experiment 0.873027396155952 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021018 chr7:130021011 synonymous SNV . 0 14 hm5C_associated_SNPs_41579 0 0 0 0 2 CPA1 chr7:130020939 3'AG 130020939 Downstream 73bp
chr7 130021011 130021011 1 + G A UCEC 130021018 + 130020998 130021038 41 TGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGGGAGAAG TGGAGGACCTGGAACACCTGCAGGTCAGAAGAGGGGAGAAG < 41bp 1 0.563486301922024 1 0.779494643211365 experiment 0.873027396155952 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021018 chr7:130021011 synonymous SNV . 0 14 hm5C_associated_SNPs_41579 0 0 0 0 2 CPA1 chr7:130021020 5'GT 130021020 Upstream 10bp
chrX 129063352 129063352 1 + T C UCEC 129063370 + 129063350 129063390 41 ATTTGAAAGGACCATCCAGACCCCCATAGGATCCACATGGA ATCTGAAAGGACCATCCAGACCCCCATAGGATCCACATGGA < 41bp 1 0.309964994966074 1 0.0712369978427887 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UTP14A ENSG00000156697 CDS Human protein_coding chrX:129063370 chrX:129063352 nonsynonymous SNV 0.997 4 3 hm5C_associated_SNPs_41580 0 0 1 0 1 UTP14A chrX:129063312 3'AG 129063312 Downstream 41bp
chr5 148577861 148577861 1 + C A UCEC 148577870 + 148577850 148577890 41 TACCAGCAACTCTATGGCACCCGCTGTGACAGCTGCCGGGA TACCAGCAACTATATGGCACCCGCTGTGACAGCTGCCGGGA < 41bp 1 0.311147778030995 1 0.336772620677948 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148577870 chr5:148577861 synonymous SNV . 0 12 hm5C_associated_SNPs_41581 0 0 0 0 1 ABLIM3 chr5:148577782 3'AG 148577782 Downstream 80bp
chr4 170616784 170616784 1 + G A UCEC 170616800 + 170616780 170616820 41 AGCTGCAGGGGTTTCTGTAGCTTTTGGTGCACCAATTGGAG AGCTACAGGGGTTTCTGTAGCTTTTGGTGCACCAATTGGAG < 41bp 1 0.126729130824577 1 0.0792041122913361 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLCN3 ENSG00000109572 CDS Human protein_coding chr4:170616800 chr4:170616784 nonsynonymous SNV 0.993 5 5 hm5C_associated_SNPs_41582 0 0 1 0 2 CLCN3 chr4:170616763 3'AG 170616763 Downstream 22bp
chr4 170616784 170616784 1 + G A UCEC 170616800 + 170616780 170616820 41 AGCTGCAGGGGTTTCTGTAGCTTTTGGTGCACCAATTGGAG AGCTACAGGGGTTTCTGTAGCTTTTGGTGCACCAATTGGAG < 41bp 1 0.126729130824577 1 0.0792041122913361 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLCN3 ENSG00000109572 CDS Human protein_coding chr4:170616800 chr4:170616784 nonsynonymous SNV 0.993 5 5 hm5C_associated_SNPs_41582 0 0 1 0 2 CLCN3 chr4:170616843 5'GT 170616843 Upstream 60bp
chr1 28862489 28862489 1 + C A UCEC 28862499 + 28862479 28862519 41 TTGCCATCTCCCATGAGGGCCACGTGTACGGCTTCGGCCTC TTGCCATCTCACATGAGGGCCACGTGTACGGCTTCGGCCTC < 41bp 1 0.590336776891955 1 0.0876669883728027 experiment 0.819326446216091 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28862499 chr1:28862489 synonymous SNV . 0 11 hm5C_associated_SNPs_41583 0 0 1 0 1 RCC1 chr1:28862538 5'GT 28862538 Upstream 50bp
chr11 126213248 126213248 1 + G T UCEC 126213246 + 126213226 126213266 41 ATCTGCCATCGCCGGGGCATCAGATCCCTACGCGACCTTAC ATCTGCCATCGCCGGGGCATCATATCCCTACGCGACCTTAC < 41bp 1 0.156998049025372 1 0.378813177347183 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DCPS ENSG00000110063 CDS Human protein_coding chr11:126213246 chr11:126213248 nonsynonymous SNV 0.841 2 23 hm5C_associated_SNPs_41584 0 0 1 0 2 DCPS chr11:126213202 3'AG 126213202 Downstream 47bp
chr11 126213248 126213248 1 + G T UCEC 126213246 + 126213226 126213266 41 ATCTGCCATCGCCGGGGCATCAGATCCCTACGCGACCTTAC ATCTGCCATCGCCGGGGCATCATATCCCTACGCGACCTTAC < 41bp 1 0.156998049025372 1 0.378813177347183 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DCPS ENSG00000110063 CDS Human protein_coding chr11:126213246 chr11:126213248 nonsynonymous SNV 0.841 2 23 hm5C_associated_SNPs_41584 0 0 1 0 2 DCPS chr11:126213312 5'GT 126213312 Upstream 65bp
chr8 23114073 23114073 1 + G A UCEC 23114068 + 23114048 23114088 41 ATGCAGAGTGAACAGCTTCTCTCACGCAAAGTGGAGTCCTT ATGCAGAGTGAACAGCTTCTCTCACACAAAGTGGAGTCCTT < 41bp 1 0.343685636303097 1 0.138097196817398 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23114068 chr8:23114073 nonsynonymous SNV 0.833 2 26 hm5C_associated_SNPs_41586 0 0 1 0 1 CHMP7 chr8:23114106 5'GT 23114106 Upstream 34bp
chr8 23114073 23114073 1 + G A UCEC 23114070 + 23114050 23114090 41 GCAGAGTGAACAGCTTCTCTCACGCAAAGTGGAGTCCTTAT GCAGAGTGAACAGCTTCTCTCACACAAAGTGGAGTCCTTAT < 41bp 1 0.315099713242259 1 0.0565425157546997 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23114070 chr8:23114073 nonsynonymous SNV 0.833 2 24 hm5C_associated_SNPs_41587 0 0 1 0 1 CHMP7 chr8:23114106 5'GT 23114106 Upstream 34bp
chr1 183091301 183091301 1 + C T UCEC 183091283 + 183091263 183091303 41 GGAGATTCAACTGCAGGCACCTCCTCCGATTGCCAACCCTG GGAGATTCAACTGCAGGCACCTCCTCCGATTGCCAACCTTG < 41bp 1 0.0990060416719981 1 0.115908592939377 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183091283 chr1:183091301 synonymous SNV . 0 39 hm5C_associated_SNPs_41588 0 0 1 0 1 LAMC1 chr1:183091386 5'GT 183091386 Upstream 86bp
chr1 183091301 183091301 1 + C T UCEC 183091288 + 183091268 183091308 41 TTCAACTGCAGGCACCTCCTCCGATTGCCAACCCTGTCCGT TTCAACTGCAGGCACCTCCTCCGATTGCCAACCTTGTCCGT < 41bp 1 0.188450477108928 1 0.270143985748291 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183091288 chr1:183091301 synonymous SNV . 0 34 hm5C_associated_SNPs_41589 0 0 1 0 1 LAMC1 chr1:183091386 5'GT 183091386 Upstream 86bp
chr6 34730433 34730433 1 + A G UCEC 34730453 + 34730433 34730473 41 ATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATTGAC GTCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATTGAC < 41bp 1 0.632518846142581 1 0.802953362464905 experiment 0.734962307714838 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNRPC ENSG00000124562 CDS Human protein_coding chr6:34730453 chr6:34730433 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_41590 0 0 1 0 2 SNRPC chr6:34730372 3'AG 34730372 Downstream 62bp
chr6 34730433 34730433 1 + A G UCEC 34730453 + 34730433 34730473 41 ATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATTGAC GTCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATTGAC < 41bp 1 0.632518846142581 1 0.802953362464905 experiment 0.734962307714838 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNRPC ENSG00000124562 CDS Human protein_coding chr6:34730453 chr6:34730433 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_41590 0 0 1 0 2 SNRPC chr6:34730480 5'GT 34730480 Upstream 48bp
chr12 57909064 57909064 1 + G T UCEC 57909051 + 57909031 57909071 41 AGGCCCAGCTGCAGCTCCCACCTCCAGCCTGCAGTATCCTG AGGCCCAGCTGCAGCTCCCACCTCCAGCCTGCATTATCCTG < 41bp 1 0.0585198460811178 1 0.0662634670734406 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MARS ENSG00000166986 CDS Human protein_coding chr12:57909051 chr12:57909064 nonsynonymous SNV 0.827 0 34 hm5C_associated_SNPs_41592 0 0 1 2 1 MARS chr12:57909119 5'GT 57909119 Upstream 56bp
chr16 842501 842501 1 + G T UCEC 842482 + 842462 842502 41 CATCCTGAACCGCAAGGGGCCACAGGAGGTGGGGCCACAGG CATCCTGAACCGCAAGGGGCCACAGGAGGTGGGGCCACATG < 41bp 1 0.528750067951064 1 0.288609385490417 experiment 0.942499864097872 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842482 chr16:842501 nonsynonymous SNV 0.001 1 40 hm5C_associated_SNPs_41593 0 0 1 0 2 CHTF18 chr16:842439 3'AG 842439 Downstream 63bp
chr16 842501 842501 1 + G T UCEC 842482 + 842462 842502 41 CATCCTGAACCGCAAGGGGCCACAGGAGGTGGGGCCACAGG CATCCTGAACCGCAAGGGGCCACAGGAGGTGGGGCCACATG < 41bp 1 0.528750067951064 1 0.288609385490417 experiment 0.942499864097872 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842482 chr16:842501 nonsynonymous SNV 0.001 1 40 hm5C_associated_SNPs_41593 0 0 1 0 2 CHTF18 chr16:842590 5'GT 842590 Upstream 90bp
chr5 141364476 141364476 1 + C T UCEC 141364483 + 141364463 141364503 41 ACATTTCAATGACCCTGGTTCACCATGTTTTAACCGGTATG ACATTTCAATGACTCTGGTTCACCATGTTTTAACCGGTATG < 41bp 1 0.660144685692038 1 0.400575697422028 experiment 0.679710628615923 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF14 ENSG00000013561 CDS Human protein_coding chr5:141364483 chr5:141364476 nonsynonymous SNV 0.257 1 14 hm5C_associated_SNPs_41594 0 0 1 0 1 RNF14 chr5:141364498 5'GT 141364498 Upstream 23bp
chr15 74920375 74920375 1 + G T UCEC 74920360 + 74920340 74920380 41 TGGAGCATTGGCTGCATTCTCTTTGAGTACTACCGGGGCTT TGGAGCATTGGCTGCATTCTCTTTGAGTACTACCGTGGCTT < 41bp 1 0.312176536393928 1 0.299371123313904 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLK3 ENSG00000179335 CDS Human protein_coding chr15:74920360 chr15:74920375 synonymous SNV . 0 36 hm5C_associated_SNPs_41598 0 0 1 0 2 CLK3 chr15:74920311 3'AG 74920311 Downstream 65bp
chr15 74920375 74920375 1 + G T UCEC 74920360 + 74920340 74920380 41 TGGAGCATTGGCTGCATTCTCTTTGAGTACTACCGGGGCTT TGGAGCATTGGCTGCATTCTCTTTGAGTACTACCGTGGCTT < 41bp 1 0.312176536393928 1 0.299371123313904 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLK3 ENSG00000179335 CDS Human protein_coding chr15:74920360 chr15:74920375 synonymous SNV . 0 36 hm5C_associated_SNPs_41598 0 0 1 0 2 CLK3 chr15:74920393 5'GT 74920393 Upstream 19bp
chr11 9462065 9462065 1 + C A UCEC 9462070 + 9462050 9462090 41 ATTTGGAGATTCTGGCTAAGCAGGCTGGTGAAGATGGAGAT ATTTGGAGATTCTGGATAAGCAGGCTGGTGAAGATGGAGAT < 41bp 1 0.696344376726001 1 0.678632974624634 experiment 0.607311246547999 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9462070 chr11:9462065 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_41599 0 0 1 0 1 IPO7 chr11:9462002 3'AG 9462002 Downstream 64bp
chr11 57574424 57574424 1 + G T UCEC 57574432 + 57574412 57574452 41 AAACGATACAGTGGATTTCCCTAAAAGAACGAGTCCAGCTC AAACGATACAGTTGATTTCCCTAAAAGAACGAGTCCAGCTC < 41bp 1 0.622967306005319 1 0.499224573373795 experiment 0.754065387989361 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57574432 chr11:57574424 synonymous SNV . 0 13 hm5C_associated_SNPs_41600 0 0 1 0 2 CTNND1 chr11:57574387 3'AG 57574387 Downstream 38bp
chr11 57574424 57574424 1 + G T UCEC 57574432 + 57574412 57574452 41 AAACGATACAGTGGATTTCCCTAAAAGAACGAGTCCAGCTC AAACGATACAGTTGATTTCCCTAAAAGAACGAGTCCAGCTC < 41bp 1 0.622967306005319 1 0.499224573373795 experiment 0.754065387989361 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57574432 chr11:57574424 synonymous SNV . 0 13 hm5C_associated_SNPs_41600 0 0 1 0 2 CTNND1 chr11:57574455 5'GT 57574455 Upstream 32bp
chr12 64810528 64810528 1 + A G UCEC 64810521 + 64810501 64810541 41 GCTTTCAAGTACTGGAACATCAAGTTAAATACAAGTAAGGC GCTTTCAAGTACTGGAACATCAAGTTAGATACAAGTAAGGC < 41bp 1 0.570172693045279 1 0.382301241159439 experiment 0.859654613909443 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XPOT ENSG00000184575 CDS Human protein_coding chr12:64810521 chr12:64810528 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_41601 0 0 1 0 2 XPOT chr12:64810478 3'AG 64810478 Downstream 51bp
chr12 64810528 64810528 1 + A G UCEC 64810521 + 64810501 64810541 41 GCTTTCAAGTACTGGAACATCAAGTTAAATACAAGTAAGGC GCTTTCAAGTACTGGAACATCAAGTTAGATACAAGTAAGGC < 41bp 1 0.570172693045279 1 0.382301241159439 experiment 0.859654613909443 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XPOT ENSG00000184575 CDS Human protein_coding chr12:64810521 chr12:64810528 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_41601 0 0 1 0 2 XPOT chr12:64810534 5'GT 64810534 Upstream 7bp
chr10 128830505 128830505 1 + G A UCEC 128830517 + 128830497 128830537 41 AGCATGCAGAGCCTTGGGAGCTGCACCATTAGCAAGGACTC AGCATGCAAAGCCTTGGGAGCTGCACCATTAGCAAGGACTC < 41bp 1 0.391610416195091 1 0.198745101690292 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:128830517 chr10:128830505 synonymous SNV . 0 9 hm5C_associated_SNPs_41602 0 0 1 0 1 DOCK1 chr10:128830584 5'GT 128830584 Upstream 80bp
chr11 108206584 108206584 1 + C A UCEC 108206601 + 108206581 108206621 41 GACCTGAGACAAGATGCTGTCATGCAACAGGTCTTCCAGAT GACATGAGACAAGATGCTGTCATGCAACAGGTCTTCCAGAT < 41bp 1 0.170059511085498 1 0.254177987575531 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108206601 chr11:108206584 nonsynonymous SNV 1.000 5 4 hm5C_associated_SNPs_41603 0 0 1 0 1 ATM chr11:108206572 3'AG 108206572 Downstream 13bp
chrX 57405176 57405176 1 + C A UCEC 57405181 + 57405161 57405201 41 CGTTATGCTGAAGACCTGGCCCCCATGTTGAAGGTCATGGC CGTTATGCTGAAGACATGGCCCCCATGTTGAAGGTCATGGC < 41bp 1 0.54538005393676 1 0.175329834222794 experiment 0.909239892126479 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57405181 chrX:57405176 nonsynonymous SNV 0.755 3 16 hm5C_associated_SNPs_41604 0 0 0 0 2 FAAH2 chrX:57405084 3'AG 57405084 Downstream 93bp
chrX 57405176 57405176 1 + C A UCEC 57405181 + 57405161 57405201 41 CGTTATGCTGAAGACCTGGCCCCCATGTTGAAGGTCATGGC CGTTATGCTGAAGACATGGCCCCCATGTTGAAGGTCATGGC < 41bp 1 0.54538005393676 1 0.175329834222794 experiment 0.909239892126479 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57405181 chrX:57405176 nonsynonymous SNV 0.755 3 16 hm5C_associated_SNPs_41604 0 0 0 0 2 FAAH2 chrX:57405219 5'GT 57405219 Upstream 44bp
chr6 42974218 42974218 1 + G A UCEC 42974203 + 42974183 42974223 41 GGTGACTTGTTTGACCAGGCCCAGCCGCAGCCCCAGCCCCA GGTGACTTGTTTGACCAGGCCCAGCCGCAGCCCCAACCCCA < 41bp 1 0.251659579550163 1 0.0689936876296997 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974203 chr6:42974218 nonsynonymous SNV . 0 36 hm5C_associated_SNPs_41605 0 0 0 0 2 PPP2R5D chr6:42974184 3'AG 42974184 Downstream 35bp
chr6 42974218 42974218 1 + G A UCEC 42974203 + 42974183 42974223 41 GGTGACTTGTTTGACCAGGCCCAGCCGCAGCCCCAGCCCCA GGTGACTTGTTTGACCAGGCCCAGCCGCAGCCCCAACCCCA < 41bp 1 0.251659579550163 1 0.0689936876296997 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974203 chr6:42974218 nonsynonymous SNV . 0 36 hm5C_associated_SNPs_41605 0 0 0 0 2 PPP2R5D chr6:42974201 3'AG 42974201 Downstream 18bp
chr20 3891319 3891319 1 + G A UCEC 3891322 + 3891302 3891342 41 TTCAATGGACGGTCACAGTGCTATTACTTTGAAAACCCTGC TTCAATGGACGGTCACAATGCTATTACTTTGAAAACCCTGC < 41bp 1 0.10457892035167 1 0.162709653377533 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PANK2 ENSG00000125779 CDS Human protein_coding chr20:3891322 chr20:3891319 synonymous SNV . 0 18 hm5C_associated_SNPs_41607 0 0 1 0 1 PANK2 chr20:3891224 3'AG 3891224 Downstream 96bp
chr8 68074128 68074128 1 + G T UCEC 68074141 + 68074121 68074161 41 GTTGACAGCATCATACGTTCCTTTATTCATGTATGTACTTT GTTGACATCATCATACGTTCCTTTATTCATGTATGTACTTT < 41bp 1 0.200524107656767 1 0.0252571403980255 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68074141 chr8:68074128 nonsynonymous SNV 0.999 3 8 hm5C_associated_SNPs_41608 0 0 1 0 2 CSPP1 chr8:68074046 3'AG 68074046 Downstream 83bp
chr8 68074128 68074128 1 + G T UCEC 68074141 + 68074121 68074161 41 GTTGACAGCATCATACGTTCCTTTATTCATGTATGTACTTT GTTGACATCATCATACGTTCCTTTATTCATGTATGTACTTT < 41bp 1 0.200524107656767 1 0.0252571403980255 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68074141 chr8:68074128 nonsynonymous SNV 0.999 3 8 hm5C_associated_SNPs_41608 0 0 1 0 2 CSPP1 chr8:68074150 5'GT 68074150 Upstream 23bp
chr16 2122332 2122332 1 + G A UCEC 2122321 + 2122301 2122341 41 TAAAGTGCTCATCTTTACTTCCCCTTGCAGTGTGGACCAGC TAAAGTGCTCATCTTTACTTCCCCTTGCAGTATGGACCAGC < 41bp 1 0.104520724338193 1 0.0332131087779999 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2122321 chr16:2122332 nonsynonymous SNV 0.871 2 32 hm5C_associated_SNPs_41609 0 0 1 0 2 TSC2 chr16:2122242 3'AG 2122242 Downstream 91bp
chr16 2122332 2122332 1 + G A UCEC 2122321 + 2122301 2122341 41 TAAAGTGCTCATCTTTACTTCCCCTTGCAGTGTGGACCAGC TAAAGTGCTCATCTTTACTTCCCCTTGCAGTATGGACCAGC < 41bp 1 0.104520724338193 1 0.0332131087779999 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2122321 chr16:2122332 nonsynonymous SNV 0.871 2 32 hm5C_associated_SNPs_41609 0 0 1 0 2 TSC2 chr16:2122364 5'GT 2122364 Upstream 33bp
chr20 39795167 39795167 1 + C T UCEC 39795148 + 39795128 39795168 41 GAGCCTGACCAGAGCACAGGCTGAGCACATGCTAATGCGCG GAGCCTGACCAGAGCACAGGCTGAGCACATGCTAATGCGTG < 41bp 1 0.375812616834464 1 0.166874259710312 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39795148 chr20:39795167 synonymous SNV . 0 40 hm5C_associated_SNPs_41610 0 0 1 0 2 PLCG1 chr20:39795116 3'AG 39795116 Downstream 52bp
chr20 39795167 39795167 1 + C T UCEC 39795148 + 39795128 39795168 41 GAGCCTGACCAGAGCACAGGCTGAGCACATGCTAATGCGCG GAGCCTGACCAGAGCACAGGCTGAGCACATGCTAATGCGTG < 41bp 1 0.375812616834464 1 0.166874259710312 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39795148 chr20:39795167 synonymous SNV . 0 40 hm5C_associated_SNPs_41610 0 0 1 0 2 PLCG1 chr20:39795235 5'GT 39795235 Upstream 69bp
chr16 81053857 81053857 1 + G A UCEC 81053845 + 81053825 81053865 41 CCGTACGCCTTCACGTCCTCCTCCATGCTGAGGCGCAATAC CCGTACGCCTTCACGTCCTCCTCCATGCTGAGACGCAATAC < 41bp 1 0.790586745857239 1 0.856892943382263 experiment 0.418826508285522 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CENPN ENSG00000166451 CDS Human protein_coding chr16:81053845 chr16:81053857 synonymous SNV . 0 33 hm5C_associated_SNPs_41611 0 0 1 0 1 CENPN chr16:81053881 5'GT 81053881 Upstream 25bp
chr6 33653602 33653602 1 + C T UCEC 33653599 + 33653579 33653619 41 GTGAGAACCACAACCGGGACCTGCAGGTGAGTGCCTCGCCA GTGAGAACCACAACCGGGACCTGTAGGTGAGTGCCTCGCCA < 41bp 1 0.458025849009731 1 0.223902702331543 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33653599 chr6:33653602 stopgain 0.977 1 24 hm5C_associated_SNPs_41612 0 0 1 0 1 ITPR3 chr6:33653604 5'GT 33653604 Upstream 3bp
chr4 166259867 166259867 1 + G A UCEC 166259885 + 166259865 166259905 41 CTGCATAGACTCTTACACCACAAAAGAATATACAAGTATAT CTACATAGACTCTTACACCACAAAAGAATATACAAGTATAT < 41bp 1 0.509924774029577 1 0.165877044200897 experiment 0.980150451940846 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MSMO1 ENSG00000052802 CDS Human protein_coding chr4:166259885 chr4:166259867 synonymous SNV . 0 3 hm5C_associated_SNPs_41613 0 0 1 0 2 MSMO1 chr4:166259804 3'AG 166259804 Downstream 64bp
chr4 166259867 166259867 1 + G A UCEC 166259885 + 166259865 166259905 41 CTGCATAGACTCTTACACCACAAAAGAATATACAAGTATAT CTACATAGACTCTTACACCACAAAAGAATATACAAGTATAT < 41bp 1 0.509924774029577 1 0.165877044200897 experiment 0.980150451940846 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MSMO1 ENSG00000052802 CDS Human protein_coding chr4:166259885 chr4:166259867 synonymous SNV . 0 3 hm5C_associated_SNPs_41613 0 0 1 0 2 MSMO1 chr4:166259930 5'GT 166259930 Upstream 64bp
chr11 65402529 65402529 1 + G A UCEC 65402544 + 65402524 65402564 41 TTGCCGACATGGACCTGCTTCACCGCGTTGTGGCGCCTGGG TTGCCAACATGGACCTGCTTCACCGCGTTGTGGCGCCTGGG < 41bp 1 0.26173546802241 1 0.116613000631332 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402544 chr11:65402529 nonsynonymous SNV 0.988 4 6 hm5C_associated_SNPs_41614 0 0 1 0 2 PCNX3 chr11:65402444 3'AG 65402444 Downstream 86bp
chr11 65402529 65402529 1 + G A UCEC 65402544 + 65402524 65402564 41 TTGCCGACATGGACCTGCTTCACCGCGTTGTGGCGCCTGGG TTGCCAACATGGACCTGCTTCACCGCGTTGTGGCGCCTGGG < 41bp 1 0.26173546802241 1 0.116613000631332 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402544 chr11:65402529 nonsynonymous SNV 0.988 4 6 hm5C_associated_SNPs_41614 0 0 1 0 2 PCNX3 chr11:65402591 5'GT 65402591 Upstream 63bp
chr2 135883791 135883791 1 + G T UCEC 135883796 + 135883776 135883816 41 CCTCATCTGACCGAAGGGATCATTGTGGATAATGATGTTTA CCTCATCTGACCGAATGGATCATTGTGGATAATGATGTTTA < 41bp 1 0.142176997658317 1 0.0930217206478119 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RAB3GAP1 ENSG00000115839 CDS Human protein_coding chr2:135883796 chr2:135883791 nonsynonymous SNV 0.990 4 16 hm5C_associated_SNPs_41615 0 0 1 0 2 RAB3GAP1 chr2:135883751 3'AG 135883751 Downstream 41bp
chr2 135883791 135883791 1 + G T UCEC 135883796 + 135883776 135883816 41 CCTCATCTGACCGAAGGGATCATTGTGGATAATGATGTTTA CCTCATCTGACCGAATGGATCATTGTGGATAATGATGTTTA < 41bp 1 0.142176997658317 1 0.0930217206478119 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RAB3GAP1 ENSG00000115839 CDS Human protein_coding chr2:135883796 chr2:135883791 nonsynonymous SNV 0.990 4 16 hm5C_associated_SNPs_41615 0 0 1 0 2 RAB3GAP1 chr2:135883819 5'GT 135883819 Upstream 29bp
chr22 51044080 51044080 1 + C A UCEC 51044075 + 51044055 51044095 41 AGGAGGACGACTTCTGGTTCCGTGGCTTCAACATGCGCACG AGGAGGACGACTTCTGGTTCCGTGGATTCAACATGCGCACG < 41bp 1 0.414287304669216 1 0.810709178447723 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAPK8IP2 ENSG00000008735 CDS Human protein_coding chr22:51044075 chr22:51044080 synonymous SNV . 0 26 hm5C_associated_SNPs_41616 0 0 0 0 2 MAPK8IP2 chr22:51043990 3'AG 51043990 Downstream 91bp
chr22 51044080 51044080 1 + C A UCEC 51044075 + 51044055 51044095 41 AGGAGGACGACTTCTGGTTCCGTGGCTTCAACATGCGCACG AGGAGGACGACTTCTGGTTCCGTGGATTCAACATGCGCACG < 41bp 1 0.414287304669216 1 0.810709178447723 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAPK8IP2 ENSG00000008735 CDS Human protein_coding chr22:51044075 chr22:51044080 synonymous SNV . 0 26 hm5C_associated_SNPs_41616 0 0 0 0 2 MAPK8IP2 chr22:51044162 5'GT 51044162 Upstream 83bp
chr1 45808595 45808595 1 + G T UCEC 45808600 + 45808580 45808620 41 ATCCTTCCAGCATGAGGGACCATATTGATTACCGCTGCTGC ATCCTTCCAGCATGATGGACCATATTGATTACCGCTGCTGC < 41bp 1 0.106645491866392 1 0.0215809941291809 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TOE1 ENSG00000132773 CDS Human protein_coding chr1:45808600 chr1:45808595 nonsynonymous SNV 0.944 2 16 hm5C_associated_SNPs_41617 0 0 1 0 1 TOE1 chr1:45808515 3'AG 45808515 Downstream 81bp
chr3 49742510 49742510 1 + C A UCEC 49742520 + 49742500 49742540 41 CAACCGCTTCCTCAGCACAGCGGCTGTGAGCCTCATGACCC CAACCGCTTCATCAGCACAGCGGCTGTGAGCCTCATGACCC < 41bp 1 0.441984577554233 1 0.260640323162079 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49742520 chr3:49742510 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_41619 0 0 1 0 1 RNF123 chr3:49742417 3'AG 49742417 Downstream 94bp
chr16 84684524 84684524 1 + C T UCEC 84684521 + 84684501 84684541 41 GTGTCTCGGCCATACAAGATCAGCGAATCATCAAAGGTCTG GTGTCTCGGCCATACAAGATCAGTGAATCATCAAAGGTCTG < 41bp 1 0.295753876597244 1 0.084331214427948 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHL36 ENSG00000135686 CDS Human protein_coding chr16:84684521 chr16:84684524 synonymous SNV . 0 24 hm5C_associated_SNPs_41620 0 0 0 0 2 KLHL36 chr16:84684458 3'AG 84684458 Downstream 67bp
chr16 84684524 84684524 1 + C T UCEC 84684521 + 84684501 84684541 41 GTGTCTCGGCCATACAAGATCAGCGAATCATCAAAGGTCTG GTGTCTCGGCCATACAAGATCAGTGAATCATCAAAGGTCTG < 41bp 1 0.295753876597244 1 0.084331214427948 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHL36 ENSG00000135686 CDS Human protein_coding chr16:84684521 chr16:84684524 synonymous SNV . 0 24 hm5C_associated_SNPs_41620 0 0 0 0 2 KLHL36 chr16:84684536 5'GT 84684536 Upstream 13bp
chr20 52824657 52824657 1 + G T UCEC 52824647 + 52824627 52824667 41 GTCCAGTCCCAAGATGGCGGCCACCATGAAGAAGGCGGTGA GTCCAGTCCCAAGATGGCGGCCACCATGAATAAGGCGGTGA < 41bp 1 0.253523821293848 1 0.0418843626976013 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PFDN4 ENSG00000101132 CDS Human protein_coding chr20:52824647 chr20:52824657 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_41621 0 0 1 0 1 PFDN4 chr20:52824663 5'GT 52824663 Upstream 7bp
chr16 2284212 2284212 1 + C T UCEC 2284209 + 2284189 2284229 41 TGCGCGCAGTGTGGCAAGGCCTTCCCCAAGGCCTACCTGCT TGCGCGCAGTGTGGCAAGGCCTTTCCCAAGGCCTACCTGCT < 41bp 1 0.0229689254079671 1 0.0454350709915161 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control E4F1 ENSG00000167967 CDS Human protein_coding chr16:2284209 chr16:2284212 synonymous SNV . 0 24 hm5C_associated_SNPs_41622 0 0 1 0 1 E4F1 chr16:2284172 3'AG 2284172 Downstream 41bp
chrX 18606144 18606144 1 + C T UCEC 18606141 + 18606121 18606161 41 TTGGGGAGCTTAGCGATGGACAGCCTTTATTTCCTGGAGAA TTGGGGAGCTTAGCGATGGACAGTCTTTATTTCCTGGAGAA < 41bp 1 0.232851849769126 1 0.245151281356812 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18606141 chrX:18606144 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_41624 0 0 0 0 1 CDKL5 chrX:18606074 3'AG 18606074 Downstream 71bp
chr1 65871727 65871727 1 + C T UCEC 65871740 + 65871720 65871760 41 CCCCACTCCTCTCCCCAGAACCGACCCAACTACAACGTGAG CCCCACTTCTCTCCCCAGAACCGACCCAACTACAACGTGAG < 41bp 1 0.0676419417762926 1 0.108251243829727 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65871740 chr1:65871727 nonsynonymous SNV 0.138 1 8 hm5C_associated_SNPs_41625 0 0 0 0 1 DNAJC6 chr1:65871816 5'GT 65871816 Upstream 90bp
chr1 109806291 109806291 1 + G A UCEC 109806280 + 109806260 109806300 41 GCAGCAGCCTGGTGGCCTGGCATGGCCTCTCGCTGCCCATC GCAGCAGCCTGGTGGCCTGGCATGGCCTCTCACTGCCCATC < 41bp 1 0.276992385336399 1 0.162453472614288 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806280 chr1:109806291 synonymous SNV . 0 32 hm5C_associated_SNPs_41626 0 0 1 0 1 CELSR2 chr1:109806233 3'AG 109806233 Downstream 59bp
chr1 43827938 43827938 1 + G T UCEC 43827926 + 43827906 43827946 41 TCTCAGGCCATGGCTTTGCACAGAACCAGCTAGTTATTTGG TCTCAGGCCATGGCTTTGCACAGAACCAGCTATTTATTTGG < 41bp 1 0.705562574741504 1 0.222673386335373 experiment 0.588874850516993 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC20 ENSG00000117399 CDS Human protein_coding chr1:43827926 chr1:43827938 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_41627 0 0 1 0 2 CDC20 chr1:43827866 3'AG 43827866 Downstream 73bp
chr1 43827938 43827938 1 + G T UCEC 43827926 + 43827906 43827946 41 TCTCAGGCCATGGCTTTGCACAGAACCAGCTAGTTATTTGG TCTCAGGCCATGGCTTTGCACAGAACCAGCTATTTATTTGG < 41bp 1 0.705562574741504 1 0.222673386335373 experiment 0.588874850516993 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC20 ENSG00000117399 CDS Human protein_coding chr1:43827926 chr1:43827938 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_41627 0 0 1 0 2 CDC20 chr1:43827983 5'GT 43827983 Upstream 46bp
chr4 107268735 107268735 1 + G T UCEC 107268727 + 107268707 107268747 41 CTAAGAAGAAGATTTGGGAGCAGATCCAGCCTGATCTTCAC CTAAGAAGAAGATTTGGGAGCAGATCCATCCTGATCTTCAC < 41bp 1 0.3967627880705 1 0.108632922172546 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AIMP1 ENSG00000164022 CDS Human protein_coding chr4:107268727 chr4:107268735 nonsynonymous SNV 0.918 4 29 hm5C_associated_SNPs_41629 0 0 1 0 1 AIMP1 chr4:107268683 3'AG 107268683 Downstream 53bp
chr19 45493759 45493759 1 + C T UCEC 45493744 + 45493724 45493764 41 CAGTCATTCGTGGTCCTCCTCTACATCCTGGACAACGAGAC CAGTCATTCGTGGTCCTCCTCTACATCCTGGACAATGAGAC < 41bp 1 0.649040911585395 1 0.720036268234253 experiment 0.701918176829209 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45493744 chr19:45493759 synonymous SNV . 0 36 hm5C_associated_SNPs_41630 0 0 1 0 1 CLPTM1 chr19:45493843 5'GT 45493843 Upstream 85bp
chr19 45493759 45493759 1 + C T UCEC 45493756 + 45493736 45493776 41 GTCCTCCTCTACATCCTGGACAACGAGACCAACTTCGTGGT GTCCTCCTCTACATCCTGGACAATGAGACCAACTTCGTGGT < 41bp 1 0.253695918392514 1 0.0227035582065582 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45493756 chr19:45493759 synonymous SNV . 0 24 hm5C_associated_SNPs_41631 0 0 1 0 1 CLPTM1 chr19:45493843 5'GT 45493843 Upstream 85bp
chr19 45493759 45493759 1 + C T UCEC 45493765 + 45493745 45493785 41 TACATCCTGGACAACGAGACCAACTTCGTGGTCCAGGTCAG TACATCCTGGACAATGAGACCAACTTCGTGGTCCAGGTCAG < 41bp 1 0.348777132552503 1 0.0284381806850433 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45493765 chr19:45493759 synonymous SNV . 0 15 hm5C_associated_SNPs_41632 0 0 1 0 1 CLPTM1 chr19:45493843 5'GT 45493843 Upstream 85bp
chr5 158695984 158695984 1 + G A UCEC 158695994 + 158695974 158696014 41 CACACTTTCAGAAGATGATACTGTGCTCGATCTCAAACAGT CACACTTTCAAAAGATGATACTGTGCTCGATCTCAAACAGT < 41bp 1 0.301608523077707 1 0.0556452572345734 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBLCP1 ENSG00000164332 CDS Human protein_coding chr5:158695994 chr5:158695984 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_41634 0 0 1 0 1 UBLCP1 chr5:158696077 5'GT 158696077 Upstream 94bp
chr10 35854954 35854954 1 + C T UCEC 35854964 + 35854944 35854984 41 TTTGCAGGAACGAGCTAGAGCGACAGTTTCTTGAATTGCTG TTTGCAGGAATGAGCTAGAGCGACAGTTTCTTGAATTGCTG < 41bp 1 0.627575311857442 1 0.300900012254715 experiment 0.744849376285115 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCNY ENSG00000108100 CDS Human protein_coding chr10:35854964 chr10:35854954 synonymous SNV . 0 11 hm5C_associated_SNPs_41635 0 0 1 0 1 CCNY chr10:35854951 3'AG 35854951 Downstream 4bp
chr6 44121509 44121509 1 + C A UCEC 44121489 + 44121469 44121509 41 TACCTGCCGGCCAAGCTGGACAAGAAGATCCACTCGGGGGC TACCTGCCGGCCAAGCTGGACAAGAAGATCCACTCGGGGGA < 41bp 1 0.724741191028448 1 0.371542751789093 experiment 0.550517617943103 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44121489 chr6:44121509 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_41636 0 0 1 0 2 TMEM63B chr6:44121413 3'AG 44121413 Downstream 97bp
chr6 44121509 44121509 1 + C A UCEC 44121489 + 44121469 44121509 41 TACCTGCCGGCCAAGCTGGACAAGAAGATCCACTCGGGGGC TACCTGCCGGCCAAGCTGGACAAGAAGATCCACTCGGGGGA < 41bp 1 0.724741191028448 1 0.371542751789093 experiment 0.550517617943103 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44121489 chr6:44121509 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_41636 0 0 1 0 2 TMEM63B chr6:44121580 5'GT 44121580 Upstream 72bp
chr8 42226801 42226801 1 + C T UCEC 42226797 + 42226777 42226817 41 TGTTCATTTTAGGGTGTTTGCCAGCTTCCCAGTAAAAATGA TGTTCATTTTAGGGTGTTTGCCAGTTTCCCAGTAAAAATGA < 41bp 1 0.37781735440952 1 0.252597749233246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLB ENSG00000070501 CDS Human protein_coding chr8:42226797 chr8:42226801 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_41637 0 0 1 0 1 POLB chr8:42226853 5'GT 42226853 Upstream 53bp
chr1 155032755 155032755 1 + T C UCEC 155032751 + 155032731 155032771 41 GTCCTGGTGATGCTTGGTGCCAGCTACTGGTACCGTGCCCG GTCCTGGTGATGCTTGGTGCCAGCCACTGGTACCGTGCCCG < 41bp 1 0.478897095913898 1 0.440146803855896 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155032751 chr1:155032755 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_41638 0 0 1 0 2 ADAM15 chr1:155032681 3'AG 155032681 Downstream 75bp
chr1 155032755 155032755 1 + T C UCEC 155032751 + 155032731 155032771 41 GTCCTGGTGATGCTTGGTGCCAGCTACTGGTACCGTGCCCG GTCCTGGTGATGCTTGGTGCCAGCCACTGGTACCGTGCCCG < 41bp 1 0.478897095913898 1 0.440146803855896 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155032751 chr1:155032755 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_41638 0 0 1 0 2 ADAM15 chr1:155032819 5'GT 155032819 Upstream 65bp
chr11 85977211 85977211 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATTAA < 41bp 1 0.161884874173062 1 0.116541057825089 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977211 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_41642 0 0 1 13 2 EED chr11:85977125 3'AG 85977125 Downstream 87bp
chr11 85977211 85977211 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATTAA < 41bp 1 0.161884874173062 1 0.116541057825089 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977211 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_41642 0 0 1 13 2 EED chr11:85977258 5'GT 85977258 Upstream 48bp
chr18 56063409 56063409 1 + C A UCEC 56063414 + 56063394 56063434 41 TGCAGCTTTAATCGCCTTGACTTACCTCCATATGAAACCTT TGCAGCTTTAATCGCATTGACTTACCTCCATATGAAACCTT < 41bp 1 0.042279831757312 1 0.0859885811805725 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NEDD4L ENSG00000049759 CDS Human protein_coding chr18:56063414 chr18:56063409 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_41643 0 0 1 0 1 NEDD4L chr18:56063399 3'AG 56063399 Downstream 11bp
chrX 129173212 129173212 1 + G T UCEC 129173210 + 129173190 129173230 41 GGCTACCTACTCGGGTCAGACAGCCATGAAGCTGGCCAGCA GGCTACCTACTCGGGTCAGACATCCATGAAGCTGGCCAGCA < 41bp 1 0.136105932064313 1 0.288677036762238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129173210 chrX:129173212 nonsynonymous SNV 0.986 3 23 hm5C_associated_SNPs_41644 0 0 0 0 1 BCORL1 chrX:129173257 5'GT 129173257 Upstream 46bp
chr4 148555323 148555323 1 + G A UCEC 148555322 + 148555302 148555342 41 GAAAACTTTATATTAAAGGACGGACAGTCAGGGGACATCCC GAAAACTTTATATTAAAGGACAGACAGTCAGGGGACATCCC < 41bp 1 0.117829364234517 1 0.0838279128074646 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM184C ENSG00000164168 CDS Human protein_coding chr4:148555322 chr4:148555323 nonsynonymous SNV 0.052 2 22 hm5C_associated_SNPs_41645 0 0 1 0 1 TMEM184C chr4:148555320 3'AG 148555320 Downstream 4bp
chr7 99751549 99751549 1 + A T UCEC 99751531 + 99751511 99751551 41 TGCTGGTGACGGTGTCAGGACAGAGGGTGTTTGTGGTGAAG TGCTGGTGACGGTGTCAGGACAGAGGGTGTTTGTGGTGTAG < 41bp 1 0.704817593713051 1 0.582604885101318 experiment 0.590364812573898 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMTOR4 ENSG00000188186 CDS Human protein_coding chr7:99751531 chr7:99751549 stopgain 1.000 1 39 hm5C_associated_SNPs_41646 0 0 1 0 1 LAMTOR4 chr7:99751490 3'AG 99751490 Downstream 60bp
chr7 99751549 99751549 1 + A T UCEC 99751560 + 99751540 99751580 41 TTTGTGGTGAAGAGGCAGAACCGAGGTCGGGAGCCCATTGA TTTGTGGTGTAGAGGCAGAACCGAGGTCGGGAGCCCATTGA < 41bp 1 0.726585532908045 1 0.480389088392258 experiment 0.54682893418391 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMTOR4 ENSG00000188186 CDS Human protein_coding chr7:99751560 chr7:99751549 stopgain 1.000 1 10 hm5C_associated_SNPs_41647 0 0 1 0 1 LAMTOR4 chr7:99751490 3'AG 99751490 Downstream 60bp
chr8 48885491 48885491 1 + C T UCEC 48885502 + 48885482 48885522 41 ACCTGGTCGCACTGTACTACCAGAGCGAGGAGCAGGCAGAG ACCTGGTCGTACTGTACTACCAGAGCGAGGAGCAGGCAGAG < 41bp 1 0.738088096922618 1 0.391317218542099 experiment 0.523823806154764 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48885502 chr8:48885491 nonsynonymous SNV 0.368 1 10 hm5C_associated_SNPs_41648 0 0 1 0 1 MCM4 chr8:48885417 3'AG 48885417 Downstream 75bp
chr11 111863187 111863187 1 + C T UCEC 111863173 + 111863153 111863193 41 GAGATTGACTCAGCAGGACACATCTGTTCTTCAGCTCAAAC GAGATTGACTCAGCAGGACACATCTGTTCTTCAGTTCAAAC < 41bp 1 0.134117735110617 1 0.0365367829799652 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111863173 chr11:111863187 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_41649 0 0 1 0 2 DIXDC1 chr11:111863139 3'AG 111863139 Downstream 49bp
chr11 111863187 111863187 1 + C T UCEC 111863173 + 111863153 111863193 41 GAGATTGACTCAGCAGGACACATCTGTTCTTCAGCTCAAAC GAGATTGACTCAGCAGGACACATCTGTTCTTCAGTTCAAAC < 41bp 1 0.134117735110617 1 0.0365367829799652 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111863173 chr11:111863187 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_41649 0 0 1 0 2 DIXDC1 chr11:111863243 5'GT 111863243 Upstream 57bp
chr2 74086421 74086421 1 + T C UCEC 74086431 + 74086411 74086451 41 AGTGTCGACCTACACACTCACTGCTCTTACCAGATGATGTT AGTGTCGACCCACACACTCACTGCTCTTACCAGATGATGTT < 41bp 1 0.463580022045016 1 0.0701512694358826 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STAMBP ENSG00000124356 CDS Human protein_coding chr2:74086431 chr2:74086421 nonsynonymous SNV 0.747 3 11 hm5C_associated_SNPs_41650 0 0 1 0 2 STAMBP chr2:74086381 3'AG 74086381 Downstream 41bp
chr2 74086421 74086421 1 + T C UCEC 74086431 + 74086411 74086451 41 AGTGTCGACCTACACACTCACTGCTCTTACCAGATGATGTT AGTGTCGACCCACACACTCACTGCTCTTACCAGATGATGTT < 41bp 1 0.463580022045016 1 0.0701512694358826 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STAMBP ENSG00000124356 CDS Human protein_coding chr2:74086431 chr2:74086421 nonsynonymous SNV 0.747 3 11 hm5C_associated_SNPs_41650 0 0 1 0 2 STAMBP chr2:74086493 5'GT 74086493 Upstream 73bp
chr12 122623378 122623378 1 + C A UCEC 122623396 + 122623376 122623416 41 TGCTCCCTGCCACGGGAGTCCCCGTTACCCGGCGCCAGTTT TGATCCCTGCCACGGGAGTCCCCGTTACCCGGCGCCAGTTT < 41bp 1 0.187289956524819 1 0.0627383291721344 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MLXIP ENSG00000175727 CDS Human protein_coding chr12:122623396 chr12:122623378 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_41653 0 0 1 0 1 MLXIP chr12:122623362 3'AG 122623362 Downstream 17bp
chr12 122255115 122255115 1 + C T UCEC 122255128 + 122255108 122255148 41 TCAAGGTCAAGAGGAAGGAGCCACCAGACACCACCTCATCT TCAAGGTTAAGAGGAAGGAGCCACCAGACACCACCTCATCT < 41bp 1 0.0305042637692219 1 0.0925533175468445 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD1B ENSG00000139718 CDS Human protein_coding chr12:122255128 chr12:122255115 synonymous SNV . 0 8 hm5C_associated_SNPs_41654 0 0 1 0 1 SETD1B chr12:122255200 5'GT 122255200 Upstream 86bp
chr16 29821422 29821422 1 + C T UCEC 29821428 + 29821408 29821448 41 GGTTTGTCCAATGGCGGCGGCAGCGGCAGCGGCGGCAGCGG GGTTTGTCCAATGGTGGCGGCAGCGGCAGCGGCGGCAGCGG < 41bp 1 0.776618762980564 1 0.505020797252655 experiment 0.446762474038873 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAZ ENSG00000103495 CDS Human protein_coding chr16:29821428 chr16:29821422 nonsynonymous SNV 0.674 2 15 hm5C_associated_SNPs_41655 0 0 1 0 1 MAZ chr16:29821398 3'AG 29821398 Downstream 25bp
chr3 39110340 39110340 1 + C T UCEC 39110322 + 39110302 39110342 41 GGCCATGAATCAACTGGGAACAATCATTGTATCAGGGTCCA GGCCATGAATCAACTGGGAACAATCATTGTATCAGGGTTCA < 41bp 1 0.0825478587892778 1 0.365059673786163 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39110322 chr3:39110340 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_41656 0 0 0 1 2 WDR48 chr3:39110262 3'AG 39110262 Downstream 79bp
chr3 39110340 39110340 1 + C T UCEC 39110322 + 39110302 39110342 41 GGCCATGAATCAACTGGGAACAATCATTGTATCAGGGTCCA GGCCATGAATCAACTGGGAACAATCATTGTATCAGGGTTCA < 41bp 1 0.0825478587892778 1 0.365059673786163 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39110322 chr3:39110340 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_41656 0 0 0 1 2 WDR48 chr3:39110350 5'GT 39110350 Upstream 11bp
chr3 39110340 39110340 1 + C T UCEC 39110326 + 39110306 39110346 41 ATGAATCAACTGGGAACAATCATTGTATCAGGGTCCACTGA ATGAATCAACTGGGAACAATCATTGTATCAGGGTTCACTGA < 41bp 1 0.291352105998913 1 0.250509262084961 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39110326 chr3:39110340 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_41657 0 0 0 1 2 WDR48 chr3:39110262 3'AG 39110262 Downstream 79bp
chr3 39110340 39110340 1 + C T UCEC 39110326 + 39110306 39110346 41 ATGAATCAACTGGGAACAATCATTGTATCAGGGTCCACTGA ATGAATCAACTGGGAACAATCATTGTATCAGGGTTCACTGA < 41bp 1 0.291352105998913 1 0.250509262084961 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39110326 chr3:39110340 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_41657 0 0 0 1 2 WDR48 chr3:39110350 5'GT 39110350 Upstream 11bp
chr21 47986587 47986587 1 + T G UCEC 47986588 + 47986568 47986608 41 ATCCGAGCACACAGGAGCATCGCTGAGTGGTAAGAGCCCAG ATCCGAGCACACAGGAGCAGCGCTGAGTGGTAAGAGCCCAG < 41bp 1 0.281425882126049 1 0.227800011634827 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47986588 chr21:47986587 nonsynonymous SNV 0.981 2 20 hm5C_associated_SNPs_41663 0 0 1 0 1 DIP2A chr21:47986596 5'GT 47986596 Upstream 10bp
chr2 113260562 113260562 1 + C A UCEC 113260557 + 113260537 113260577 41 GGGTGTGCTTCGGACTGCTTCAGAACCATATCATGTTGATA GGGTGTGCTTCGGACTGCTTCAGAAACATATCATGTTGATA < 41bp 1 0.529682514064647 1 0.500202476978302 experiment 0.940634971870706 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113260557 chr2:113260562 nonsynonymous SNV 0.996 2 26 hm5C_associated_SNPs_41664 0 0 1 5 1 TTL chr2:113260489 3'AG 113260489 Downstream 74bp
chr19 16296485 16296485 1 + G T UCEC 16296488 + 16296468 16296508 41 ACTCCTGGAAGCAATGGGAACGAGCAAAAAGAACGAGGAGG ACTCCTGGAAGCAATGGTAACGAGCAAAAAGAACGAGGAGG < 41bp 1 0.647647334463699 1 0.606327295303345 experiment 0.704705331072602 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FAM32A ENSG00000105058 CDS Human protein_coding chr19:16296488 chr19:16296485 nonsynonymous SNV 0.984 0 18 hm5C_associated_SNPs_41665 0 0 1 0 2 FAM32A chr19:16296435 3'AG 16296435 Downstream 51bp
chr19 16296485 16296485 1 + G T UCEC 16296488 + 16296468 16296508 41 ACTCCTGGAAGCAATGGGAACGAGCAAAAAGAACGAGGAGG ACTCCTGGAAGCAATGGTAACGAGCAAAAAGAACGAGGAGG < 41bp 1 0.647647334463699 1 0.606327295303345 experiment 0.704705331072602 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FAM32A ENSG00000105058 CDS Human protein_coding chr19:16296488 chr19:16296485 nonsynonymous SNV 0.984 0 18 hm5C_associated_SNPs_41665 0 0 1 0 2 FAM32A chr19:16296576 5'GT 16296576 Upstream 92bp
chr3 100059959 100059959 1 + G A UCEC 100059974 + 100059954 100059994 41 CACCTGTGCTGTGTTTGGGCCTGATGGAACTTTACTAGCAA CACCTATGCTGTGTTTGGGCCTGATGGAACTTTACTAGCAA < 41bp 1 0.395606388268192 1 0.108839780092239 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NIT2 ENSG00000114021 CDS Human protein_coding chr3:100059974 chr3:100059959 nonsynonymous SNV 0.971 4 6 hm5C_associated_SNPs_41666 0 0 1 0 2 NIT2 chr3:100059917 3'AG 100059917 Downstream 43bp
chr3 100059959 100059959 1 + G A UCEC 100059974 + 100059954 100059994 41 CACCTGTGCTGTGTTTGGGCCTGATGGAACTTTACTAGCAA CACCTATGCTGTGTTTGGGCCTGATGGAACTTTACTAGCAA < 41bp 1 0.395606388268192 1 0.108839780092239 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NIT2 ENSG00000114021 CDS Human protein_coding chr3:100059974 chr3:100059959 nonsynonymous SNV 0.971 4 6 hm5C_associated_SNPs_41666 0 0 1 0 2 NIT2 chr3:100060005 5'GT 100060005 Upstream 47bp
chr3 4856217 4856217 1 + G T UCEC 4856235 + 4856215 4856255 41 TAGGAGATGTACTCAGGAAGCCGTCCAAAGAGGTAAATTAA TATGAGATGTACTCAGGAAGCCGTCCAAAGAGGTAAATTAA < 41bp 1 0.0455194813962601 1 0.448493987321854 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4856235 chr3:4856217 stopgain 0.998 1 3 hm5C_associated_SNPs_41667 0 0 1 0 1 ITPR1 chr3:4856246 5'GT 4856246 Upstream 30bp
chr15 43632483 43632483 1 + A C UCEC 43632491 + 43632471 43632511 41 AGATGTCATAAAAGAATTTGCAGATGACGGCGTCAAGTACC AGATGTCATAAACGAATTTGCAGATGACGGCGTCAAGTACC < 41bp 1 0.503472669373406 1 0.483913153409958 experiment 0.993054661253188 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ADAL ENSG00000168803 CDS Human protein_coding chr15:43632491 chr15:43632483 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_41668 0 0 1 0 1 ADAL chr15:43632550 5'GT 43632550 Upstream 68bp
chr1 158063226 158063226 1 + C T UCEC 158063221 + 158063201 158063241 41 CCTTGGTATTCTTCCTCTACCGGCGCCGCAAAGGCAGTGAG CCTTGGTATTCTTCCTCTACCGGCGTCGCAAAGGCAGTGAG < 41bp 1 0.715804648183927 1 0.721029281616211 experiment 0.568390703632147 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063221 chr1:158063226 synonymous SNV . 0 26 hm5C_associated_SNPs_41670 0 0 0 0 2 KIRREL chr1:158063129 3'AG 158063129 Downstream 98bp
chr1 158063226 158063226 1 + C T UCEC 158063221 + 158063201 158063241 41 CCTTGGTATTCTTCCTCTACCGGCGCCGCAAAGGCAGTGAG CCTTGGTATTCTTCCTCTACCGGCGTCGCAAAGGCAGTGAG < 41bp 1 0.715804648183927 1 0.721029281616211 experiment 0.568390703632147 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063221 chr1:158063226 synonymous SNV . 0 26 hm5C_associated_SNPs_41670 0 0 0 0 2 KIRREL chr1:158063236 5'GT 158063236 Upstream 11bp
chr7 142991814 142991814 1 + T G UCEC 142991795 + 142991775 142991815 41 GCTCTGGAGGGGATGTGGACCACAGTACTCTAGTCACCCTC GCTCTGGAGGGGATGTGGACCACAGTACTCTAGTCACCCGC < 41bp 1 0.780603294663032 1 0.668518841266632 experiment 0.438793410673937 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CASP2 ENSG00000106144 CDS Human protein_coding chr7:142991795 chr7:142991814 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_41672 0 0 1 0 1 CASP2 chr7:142991866 5'GT 142991866 Upstream 53bp
chr11 46400051 46400051 1 + G A UCEC 46400038 + 46400018 46400058 41 ATTGAGGCTGCCAAGAGGAACGACTTCTGTAAGGTACTAGC ATTGAGGCTGCCAAGAGGAACGACTTCTGTAAGATACTAGC < 41bp 1 0.156403238297425 1 0.445477545261383 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 splicing Human protein_coding chr11:46400038 chr11:46400051 . 0.971 0 34 hm5C_associated_SNPs_41673 0 0 1 0 1 DGKZ chr11:46400007 3'AG 46400007 Downstream 45bp
chr16 29828323 29828323 1 + G A UCEC 29828307 + 29828287 29828327 41 ATCCGATGAGGAGCCGGAGGCCAAAGAAGAGGAAGAGGAAA ATCCGATGAGGAGCCGGAGGCCAAAGAAGAGGAAGAAGAAA < 41bp 1 0.376808886776886 1 0.726247608661652 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828307 chr16:29828323 synonymous SNV . 0 37 hm5C_associated_SNPs_41674 0 0 1 0 1 PAGR1 chr16:29828328 5'GT 29828328 Upstream 6bp
chr17 4498569 4498569 1 + G A UCEC 4498575 + 4498555 4498595 41 CGCACCTCGGAGGCGCAGGCCCGGAAAGCATTGTTTGAGAA CGCACCTCGGAGGCACAGGCCCGGAAAGCATTGTTTGAGAA < 41bp 1 0.664245155101031 1 0.338069975376129 experiment 0.671509689797939 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4498575 chr17:4498569 synonymous SNV . 0 15 hm5C_associated_SNPs_41675 0 0 0 0 1 SMTNL2 chr17:4498622 5'GT 4498622 Upstream 54bp
chr12 56504367 56504367 1 + A G UCEC 56504375 + 56504355 56504395 41 GGACAGAGAACCACTATTTACAAACGAGACCCCTCTAAACA GGACAGAGAACCGCTATTTACAAACGAGACCCCTCTAAACA < 41bp 1 0.390486987976527 1 0.436355412006378 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56504375 chr12:56504367 nonsynonymous SNV 0.998 1 13 hm5C_associated_SNPs_41677 0 0 1 0 1 PA2G4 chr12:56504343 3'AG 56504343 Downstream 25bp
chr16 731820 731820 1 + C T UCEC 731817 + 731797 731837 41 CTGGAAGAGTGCCAGCGAAACCACGAGGGTGATGAGGACGA CTGGAAGAGTGCCAGCGAAACCATGAGGGTGATGAGGACGA < 41bp 1 0.202559604461186 1 0.108296066522598 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STUB1 ENSG00000103266 CDS Human protein_coding chr16:731817 chr16:731820 synonymous SNV . 0 24 hm5C_associated_SNPs_41678 0 0 1 0 2 STUB1 chr16:731793 3'AG 731793 Downstream 28bp
chr16 731820 731820 1 + C T UCEC 731817 + 731797 731837 41 CTGGAAGAGTGCCAGCGAAACCACGAGGGTGATGAGGACGA CTGGAAGAGTGCCAGCGAAACCATGAGGGTGATGAGGACGA < 41bp 1 0.202559604461186 1 0.108296066522598 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STUB1 ENSG00000103266 CDS Human protein_coding chr16:731817 chr16:731820 synonymous SNV . 0 24 hm5C_associated_SNPs_41678 0 0 1 0 2 STUB1 chr16:731880 5'GT 731880 Upstream 61bp
chr2 201485950 201485950 1 + A G UCEC 201485944 + 201485924 201485964 41 CTTCTGCTTTTTTACTGAAGCTGAGAAATTTCTGGCGACAG CTTCTGCTTTTTTACTGAAGCTGAGAGATTTCTGGCGACAG < 41bp 1 0.446847821657392 1 0.114918619394302 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AOX1 ENSG00000138356 CDS Human protein_coding chr2:201485944 chr2:201485950 nonsynonymous SNV 0.002 0 27 hm5C_associated_SNPs_41679 0 0 0 0 1 AOX1 chr2:201485969 5'GT 201485969 Upstream 20bp
chr5 92923708 92923708 1 + C T UCEC 92923717 + 92923697 92923737 41 AACGGCCACTGCTACCTGTCCGGCTACATCTCGCTGCTGCT AACGGCCACTGTTACCTGTCCGGCTACATCTCGCTGCTGCT < 41bp 1 0.293953329888808 1 0.312545627355576 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NR2F1 ENSG00000175745 CDS Human protein_coding chr5:92923717 chr5:92923708 synonymous SNV . 0 12 hm5C_associated_SNPs_41680 0 0 1 0 1 NR2F1 chr5:92923623 3'AG 92923623 Downstream 86bp
chr6 145103207 145103207 1 + G A UCEC 145103189 + 145103169 145103209 41 ATGATGGACTTGAGCAAATGCATAAGGACCTGGTCAACGTT ATGATGGACTTGAGCAAATGCATAAGGACCTGGTCAACATT < 41bp 1 0.148918291464243 1 0.139955252408981 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:145103189 chr6:145103207 nonsynonymous SNV 0.963 1 39 hm5C_associated_SNPs_41684 0 0 0 0 1 UTRN chr6:145103259 5'GT 145103259 Upstream 53bp
chr11 86947693 86947693 1 + G T UCEC 86947706 + 86947686 86947726 41 TTGTTTTGCATCACAGCTGCCATGTACATGTTCTTTTTCAG TTGTTTTTCATCACAGCTGCCATGTACATGTTCTTTTTCAG < 41bp 1 0.0453505374486022 1 0.042749434709549 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM135 ENSG00000166575 CDS Human protein_coding chr11:86947706 chr11:86947693 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_41685 0 0 1 0 2 TMEM135 chr11:86947680 3'AG 86947680 Downstream 14bp
chr11 86947693 86947693 1 + G T UCEC 86947706 + 86947686 86947726 41 TTGTTTTGCATCACAGCTGCCATGTACATGTTCTTTTTCAG TTGTTTTTCATCACAGCTGCCATGTACATGTTCTTTTTCAG < 41bp 1 0.0453505374486022 1 0.042749434709549 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM135 ENSG00000166575 CDS Human protein_coding chr11:86947706 chr11:86947693 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_41685 0 0 1 0 2 TMEM135 chr11:86947726 5'GT 86947726 Upstream 34bp
chr20 42089377 42089377 1 + C G UCEC 42089358 + 42089338 42089378 41 TCCAGTTCCAGGTCGCGGAGCAAAGGTCGATCACGTTCTCG TCCAGTTCCAGGTCGCGGAGCAAAGGTCGATCACGTTCTGG < 41bp 1 0.46614030768295 1 0.419936299324036 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089358 chr20:42089377 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_41686 0 0 1 0 1 SRSF6 chr20:42089343 3'AG 42089343 Downstream 35bp
chr5 132400704 132400704 1 + C T UCEC 132400719 + 132400699 132400739 41 TCGTTCAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC TCGTTTAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC < 41bp 1 0.481455697847025 1 0.489507347345352 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132400719 chr5:132400704 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_41688 0 0 1 0 2 HSPA4 chr5:132400672 3'AG 132400672 Downstream 33bp
chr5 132400704 132400704 1 + C T UCEC 132400719 + 132400699 132400739 41 TCGTTCAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC TCGTTTAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC < 41bp 1 0.481455697847025 1 0.489507347345352 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132400719 chr5:132400704 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_41688 0 0 1 0 2 HSPA4 chr5:132400729 5'GT 132400729 Upstream 26bp
chrX 47101580 47101580 1 + G A UCEC 47101578 + 47101558 47101598 41 CAAGTCCACGCTGGTGTGCCCCGATTGTGGCAATGTATCTG CAAGTCCACGCTGGTGTGCCCCAATTGTGGCAATGTATCTG < 41bp 1 0.0825929258083727 1 0.0674139559268951 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47101578 chrX:47101580 nonsynonymous SNV 0.979 3 23 hm5C_associated_SNPs_41689 0 0 1 0 1 USP11 chrX:47101481 3'AG 47101481 Downstream 100bp
chr19 13002703 13002703 1 + A G UCEC 13002695 + 13002675 13002715 41 CGCTGGTGCTGGAGGAGCAGCTGACCACAGATGAGATCCTC CGCTGGTGCTGGAGGAGCAGCTGACCACGGATGAGATCCTC < 41bp 1 0.474535254408762 1 0.741491496562958 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13002695 chr19:13002703 synonymous SNV . 0 29 hm5C_associated_SNPs_41690 0 0 0 0 2 GCDH chr19:13002645 3'AG 13002645 Downstream 59bp
chr19 13002703 13002703 1 + A G UCEC 13002695 + 13002675 13002715 41 CGCTGGTGCTGGAGGAGCAGCTGACCACAGATGAGATCCTC CGCTGGTGCTGGAGGAGCAGCTGACCACGGATGAGATCCTC < 41bp 1 0.474535254408762 1 0.741491496562958 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13002695 chr19:13002703 synonymous SNV . 0 29 hm5C_associated_SNPs_41690 0 0 0 0 2 GCDH chr19:13002788 5'GT 13002788 Upstream 86bp
chr10 99416045 99416045 1 + G T UCEC 99416064 + 99416044 99416084 41 AGTATACCTGGCCAGTGAGACCTTCAACTATAGTGCCATTG ATTATACCTGGCCAGTGAGACCTTCAACTATAGTGCCATTG < 41bp 1 0.0134396712914965 1 0.0482575595378876 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PI4K2A ENSG00000155252;ENSG00000249967 CDS Human other chr10:99416064 chr10:99416045 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_41691 0 0 0 0 1 PI4K2A chr10:99416042 3'AG 99416042 Downstream 4bp
chr1 10435346 10435346 1 + C T UCEC 10435355 + 10435335 10435375 41 GCACAAAGCACCGTGGGGTCCTTTTGCAGGCCCTCAATGAC GCACAAAGCACTGTGGGGTCCTTTTGCAGGCCCTCAATGAC < 41bp 1 0.0386004963593578 1 0.062830924987793 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10435355 chr1:10435346 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_41693 0 0 1 0 2 KIF1B chr1:10435313 3'AG 10435313 Downstream 34bp
chr1 10435346 10435346 1 + C T UCEC 10435355 + 10435335 10435375 41 GCACAAAGCACCGTGGGGTCCTTTTGCAGGCCCTCAATGAC GCACAAAGCACTGTGGGGTCCTTTTGCAGGCCCTCAATGAC < 41bp 1 0.0386004963593578 1 0.062830924987793 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10435355 chr1:10435346 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_41693 0 0 1 0 2 KIF1B chr1:10435431 5'GT 10435431 Upstream 86bp
chr20 25198139 25198139 1 + G A UCEC 25198155 + 25198135 25198175 41 CAGGGCACCCTGCAGGCCTCCCCACCCGGCTACCTGACGGC CAGGACACCCTGCAGGCCTCCCCACCCGGCTACCTGACGGC < 41bp 1 0.116671054457096 1 0.0753320753574371 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25198155 chr20:25198139 nonsynonymous SNV 0.162 0 5 hm5C_associated_SNPs_41694 0 0 1 0 2 ENTPD6 chr20:25198138 3'AG 25198138 Downstream 2bp
chr20 25198139 25198139 1 + G A UCEC 25198155 + 25198135 25198175 41 CAGGGCACCCTGCAGGCCTCCCCACCCGGCTACCTGACGGC CAGGACACCCTGCAGGCCTCCCCACCCGGCTACCTGACGGC < 41bp 1 0.116671054457096 1 0.0753320753574371 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25198155 chr20:25198139 nonsynonymous SNV 0.162 0 5 hm5C_associated_SNPs_41694 0 0 1 0 2 ENTPD6 chr20:25198217 5'GT 25198217 Upstream 79bp
chr2 71780277 71780277 1 + C T UCEC 71780268 + 71780248 71780288 41 CGGGAACAAGTTCGACATGACCTGCCTGCCGCTGGCCTCCA CGGGAACAAGTTCGACATGACCTGCCTGCTGCTGGCCTCCA < 41bp 1 0.132576357723357 1 0.0163420140743256 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71780268 chr2:71780277 nonsynonymous SNV 0.994 5 30 hm5C_associated_SNPs_41696 0 0 0 0 1 DYSF chr2:71780318 5'GT 71780318 Upstream 42bp
chr19 49993826 49993826 1 + C T UCEC 49993825 + 49993805 49993845 41 CAGCCGCATCTTCTGGCGGACCGTGCGAGGTGAGCAGAGCG CAGCCGCATCTTCTGGCGGACTGTGCGAGGTGAGCAGAGCG < 41bp 1 0.347156113302824 1 0.232163906097412 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993825 chr19:49993826 synonymous SNV . 0 22 hm5C_associated_SNPs_41697 0 0 1 0 2 RPL13A chr19:49993732 3'AG 49993732 Downstream 95bp
chr19 49993826 49993826 1 + C T UCEC 49993825 + 49993805 49993845 41 CAGCCGCATCTTCTGGCGGACCGTGCGAGGTGAGCAGAGCG CAGCCGCATCTTCTGGCGGACTGTGCGAGGTGAGCAGAGCG < 41bp 1 0.347156113302824 1 0.232163906097412 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993825 chr19:49993826 synonymous SNV . 0 22 hm5C_associated_SNPs_41697 0 0 1 0 2 RPL13A chr19:49993833 5'GT 49993833 Upstream 8bp
chr6 44221300 44221300 1 + G A UCEC 44221288 + 44221268 44221308 41 CAGTTCCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGAT CAGTTCCTGATGAGATCCCCCCTCTCGAGGGCAATGAGGAT < 41bp 1 0.0431993846448436 1 0.0520859360694885 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44221288 chr6:44221300 nonsynonymous SNV 0.612 0 33 hm5C_associated_SNPs_41698 0 0 1 0 1 HSP90AB1 chr6:44221226 3'AG 44221226 Downstream 75bp
chr6 44221300 44221300 1 + G A UCEC 44221289 + 44221269 44221309 41 AGTTCCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGATG AGTTCCTGATGAGATCCCCCCTCTCGAGGGCAATGAGGATG < 41bp 1 0.262744691981284 1 0.237962126731873 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44221289 chr6:44221300 nonsynonymous SNV 0.612 0 32 hm5C_associated_SNPs_41699 0 0 1 0 1 HSP90AB1 chr6:44221226 3'AG 44221226 Downstream 75bp
chr11 47602091 47602091 1 + C T UCEC 47602077 + 47602057 47602097 41 AATATGCCTTTTCCTTCCAGCCACTGTCAGACCACGGAATG AATATGCCTTTTCCTTCCAGCCACTGTCAGACCATGGAATG < 41bp 1 0.186558951834566 1 0.0551910996437073 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47602077 chr11:47602091 nonsynonymous SNV 0.969 0 35 hm5C_associated_SNPs_41700 0 0 1 0 2 NDUFS3 chr11:47602077 3'AG 47602077 Downstream 15bp
chr11 47602091 47602091 1 + C T UCEC 47602077 + 47602057 47602097 41 AATATGCCTTTTCCTTCCAGCCACTGTCAGACCACGGAATG AATATGCCTTTTCCTTCCAGCCACTGTCAGACCATGGAATG < 41bp 1 0.186558951834566 1 0.0551910996437073 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47602077 chr11:47602091 nonsynonymous SNV 0.969 0 35 hm5C_associated_SNPs_41700 0 0 1 0 2 NDUFS3 chr11:47602174 5'GT 47602174 Upstream 84bp
chr15 22945054 22945054 1 + G A UCEC 22945057 + 22945037 22945077 41 CAGGTGGTCACGGGCTCGGGCCGCCAGGAGGCCCAGAAGAC CAGGTGGTCACGGGCTCAGGCCGCCAGGAGGCCCAGAAGAC < 41bp 1 0.225578501924787 1 0.403597444295883 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22945057 chr15:22945054 synonymous SNV . 0 18 hm5C_associated_SNPs_41701 0 0 1 0 1 CYFIP1 chr15:22945040 3'AG 22945040 Downstream 15bp
chr21 45733850 45733850 1 + C A UCEC 45733862 + 45733842 45733882 41 TTCATCCCCGAGGCTCCACCCGAGGACGGCTGGGAGAACTT TTCATCCCAGAGGCTCCACCCGAGGACGGCTGGGAGAACTT < 41bp 1 0.671565438405789 1 0.845573544502258 experiment 0.656869123188422 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45733862 chr21:45733850 synonymous SNV . 0 9 hm5C_associated_SNPs_41702 0 0 1 0 2 PFKL chr21:45733796 3'AG 45733796 Downstream 55bp
chr21 45733850 45733850 1 + C A UCEC 45733862 + 45733842 45733882 41 TTCATCCCCGAGGCTCCACCCGAGGACGGCTGGGAGAACTT TTCATCCCAGAGGCTCCACCCGAGGACGGCTGGGAGAACTT < 41bp 1 0.671565438405789 1 0.845573544502258 experiment 0.656869123188422 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45733862 chr21:45733850 synonymous SNV . 0 9 hm5C_associated_SNPs_41702 0 0 1 0 2 PFKL chr21:45733904 5'GT 45733904 Upstream 55bp
chrX 153663648 153663648 1 + G C UCEC 153663636 + 153663616 153663656 41 CCAGGTTCATTCTGGCCAACCGCCTCTACCCAGTGTCTGCC CCAGGTTCATTCTGGCCAACCGCCTCTACCCACTGTCTGCC < 41bp 1 0.398828778907708 1 0.0971961617469788 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP6AP1 ENSG00000071553 CDS Human protein_coding chrX:153663636 chrX:153663648 nonsynonymous SNV 0.999 1 33 hm5C_associated_SNPs_41703 0 0 1 0 1 ATP6AP1 chrX:153663620 3'AG 153663620 Downstream 29bp
chr5 7885889 7885889 1 + C A UCEC 7885875 + 7885855 7885895 41 GATCTGCCCTAACAGTGATTCTGAGGTACAAAGCCTACTCC GATCTGCCCTAACAGTGATTCTGAGGTACAAAGCATACTCC < 41bp 1 0.742248262006011 1 0.733940422534943 experiment 0.515503475987978 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885875 chr5:7885889 nonsynonymous SNV 0.004 3 35 hm5C_associated_SNPs_41704 0 0 1 0 1 MTRR chr5:7885814 3'AG 7885814 Downstream 76bp
chr17 37358661 37358661 1 + G A UCEC 37358657 + 37358637 37358677 41 GGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCA GGCTCGATGCCGGAAAAACACCTTAGCCCGCCGGAAGGGCA < 41bp 1 0.343308576183798 1 0.0416496694087982 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358657 chr17:37358661 synonymous SNV . 0 25 hm5C_associated_SNPs_41706 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 92bp
chr17 37358661 37358661 1 + G A UCEC 37358657 + 37358637 37358677 41 GGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCA GGCTCGATGCCGGAAAAACACCTTAGCCCGCCGGAAGGGCA < 41bp 1 0.343308576183798 1 0.0416496694087982 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358657 chr17:37358661 synonymous SNV . 0 25 hm5C_associated_SNPs_41706 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 32bp
chr17 37358661 37358661 1 + G A UCEC 37358663 + 37358643 37358683 41 ATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACA ATGCCGGAAAAACACCTTAGCCCGCCGGAAGGGCAGGCACA < 41bp 1 0.268056613206942 1 0.0618149638175964 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358663 chr17:37358661 synonymous SNV . 0 19 hm5C_associated_SNPs_41707 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 92bp
chr17 37358661 37358661 1 + G A UCEC 37358663 + 37358643 37358683 41 ATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACA ATGCCGGAAAAACACCTTAGCCCGCCGGAAGGGCAGGCACA < 41bp 1 0.268056613206942 1 0.0618149638175964 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358663 chr17:37358661 synonymous SNV . 0 19 hm5C_associated_SNPs_41707 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 32bp
chr17 37358661 37358661 1 + G A UCEC 37358664 + 37358644 37358684 41 TGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACAT TGCCGGAAAAACACCTTAGCCCGCCGGAAGGGCAGGCACAT < 41bp 1 0.326409030525545 1 0.247011244297028 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358664 chr17:37358661 synonymous SNV . 0 18 hm5C_associated_SNPs_41708 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 92bp
chr17 37358661 37358661 1 + G A UCEC 37358664 + 37358644 37358684 41 TGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACAT TGCCGGAAAAACACCTTAGCCCGCCGGAAGGGCAGGCACAT < 41bp 1 0.326409030525545 1 0.247011244297028 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358664 chr17:37358661 synonymous SNV . 0 18 hm5C_associated_SNPs_41708 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 32bp
chr17 37358661 37358661 1 + G A UCEC 37358667 + 37358647 37358687 41 CGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATGGG CGGAAAAACACCTTAGCCCGCCGGAAGGGCAGGCACATGGG < 41bp 1 0.769449664005541 1 0.49298170208931 experiment 0.461100671988917 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358667 chr17:37358661 synonymous SNV . 0 15 hm5C_associated_SNPs_41709 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 92bp
chr17 37358661 37358661 1 + G A UCEC 37358667 + 37358647 37358687 41 CGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATGGG CGGAAAAACACCTTAGCCCGCCGGAAGGGCAGGCACATGGG < 41bp 1 0.769449664005541 1 0.49298170208931 experiment 0.461100671988917 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358667 chr17:37358661 synonymous SNV . 0 15 hm5C_associated_SNPs_41709 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 32bp
chr17 37358661 37358661 1 + G A UCEC 37358668 + 37358648 37358688 41 GGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATGGGC GGAAAAACACCTTAGCCCGCCGGAAGGGCAGGCACATGGGC < 41bp 1 0.760825646474451 1 0.766160070896149 experiment 0.478348707051097 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358668 chr17:37358661 synonymous SNV . 0 14 hm5C_associated_SNPs_41710 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 92bp
chr17 37358661 37358661 1 + G A UCEC 37358668 + 37358648 37358688 41 GGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATGGGC GGAAAAACACCTTAGCCCGCCGGAAGGGCAGGCACATGGGC < 41bp 1 0.760825646474451 1 0.766160070896149 experiment 0.478348707051097 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358668 chr17:37358661 synonymous SNV . 0 14 hm5C_associated_SNPs_41710 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 32bp
chr17 37358661 37358661 1 + G A UCEC 37358680 + 37358660 37358700 41 TGGCCCGCCGGAAGGGCAGGCACATGGGCATAGGTAAGTGT TAGCCCGCCGGAAGGGCAGGCACATGGGCATAGGTAAGTGT < 41bp 1 0.299856082072505 1 0.145772457122803 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358680 chr17:37358661 synonymous SNV . 0 2 hm5C_associated_SNPs_41711 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 92bp
chr17 37358661 37358661 1 + G A UCEC 37358680 + 37358660 37358700 41 TGGCCCGCCGGAAGGGCAGGCACATGGGCATAGGTAAGTGT TAGCCCGCCGGAAGGGCAGGCACATGGGCATAGGTAAGTGT < 41bp 1 0.299856082072505 1 0.145772457122803 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358680 chr17:37358661 synonymous SNV . 0 2 hm5C_associated_SNPs_41711 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 32bp
chr12 22208525 22208525 1 + G T UCEC 22208514 + 22208494 22208534 41 TCTCTGTTGTGAGACGCCATCAGTTTCGATGGAGTGAAATT TCTCTGTTGTGAGACGCCATCAGTTTCGATGTAGTGAAATT < 41bp 1 0.382470747645039 1 0.193571805953979 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208514 chr12:22208525 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_41712 0 0 0 0 1 CMAS chr12:22208544 5'GT 22208544 Upstream 20bp
chr19 42373177 42373177 1 + G T UCEC 42373186 + 42373166 42373206 41 GGGGGACGTCAGAGAAACGGCGTCATGCCCAGCCACTTCAG GGGGGACGTCATAGAAACGGCGTCATGCCCAGCCACTTCAG < 41bp 1 0.614710971293152 1 0.389224916696548 experiment 0.770578057413695 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373186 chr19:42373177 stopgain 1.000 2 12 hm5C_associated_SNPs_41713 0 0 1 0 1 RPS19 chr19:42373101 3'AG 42373101 Downstream 77bp
chr19 42373177 42373177 1 + G T UCEC 42373193 + 42373173 42373213 41 GTCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGC GTCATAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGC < 41bp 1 0.245236967655797 1 0.126057147979736 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373193 chr19:42373177 stopgain 1.000 2 5 hm5C_associated_SNPs_41714 0 0 1 0 1 RPS19 chr19:42373101 3'AG 42373101 Downstream 77bp
chr19 42373177 42373177 1 + G T UCEC 42373194 + 42373174 42373214 41 TCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCT TCATAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCT < 41bp 1 0.259472025076371 1 0.108651369810104 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373194 chr19:42373177 stopgain 1.000 2 4 hm5C_associated_SNPs_41715 0 0 1 0 1 RPS19 chr19:42373101 3'AG 42373101 Downstream 77bp
chr3 32169680 32169680 1 + G A UCEC 32169667 + 32169647 32169687 41 TTTGAAGAAACAGTGAATGGCAGAAAACTGACAGACATCAT TTTGAAGAAACAGTGAATGGCAGAAAACTGACAAACATCAT < 41bp 1 0.630923541073898 1 0.339326560497284 experiment 0.738152917852203 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GPD1L ENSG00000152642 CDS Human protein_coding chr3:32169667 chr3:32169680 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_41720 0 0 0 0 1 GPD1L chr3:32169745 5'GT 32169745 Upstream 66bp
chr7 4796802 4796802 1 + G A UCEC 4796801 + 4796781 4796821 41 TCCTGCTTCCGCACCCCCTTCGGGCCTCTGTCCTCAAGGTA TCCTGCTTCCGCACCCCCTTCAGGCCTCTGTCCTCAAGGTA < 41bp 1 0.298901321965019 1 0.678507328033447 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4796801 chr7:4796802 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_41721 0 0 1 0 1 FOXK1 chr7:4796818 5'GT 4796818 Upstream 17bp
chr2 86968139 86968139 1 + G A UCEC 86968142 + 86968122 86968162 41 TTCAAAAATTGGCCTCCGACCACAAAGACATCCACAGCAGT TTCAAAAATTGGCCTCCAACCACAAAGACATCCACAGCAGT < 41bp 1 0.494991793220183 1 0.822614431381226 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RMND5A ENSG00000153561 CDS Human protein_coding chr2:86968142 chr2:86968139 nonsynonymous SNV 0.834 2 18 hm5C_associated_SNPs_41722 0 0 0 0 2 RMND5A chr2:86968050 3'AG 86968050 Downstream 90bp
chr2 86968139 86968139 1 + G A UCEC 86968142 + 86968122 86968162 41 TTCAAAAATTGGCCTCCGACCACAAAGACATCCACAGCAGT TTCAAAAATTGGCCTCCAACCACAAAGACATCCACAGCAGT < 41bp 1 0.494991793220183 1 0.822614431381226 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RMND5A ENSG00000153561 CDS Human protein_coding chr2:86968142 chr2:86968139 nonsynonymous SNV 0.834 2 18 hm5C_associated_SNPs_41722 0 0 0 0 2 RMND5A chr2:86968192 5'GT 86968192 Upstream 54bp
chr4 186231909 186231909 1 + C A UCEC 186231908 + 186231888 186231928 41 GAATCCGAATCCTGGGAGGCCCTGCCTATGACCAGCAAGAG GAATCCGAATCCTGGGAGGCCATGCCTATGACCAGCAAGAG < 41bp 1 0.200891479237794 1 0.269569873809814 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX25 ENSG00000109762 CDS Human protein_coding chr4:186231908 chr4:186231909 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_41723 0 0 1 0 1 SNX25 chr4:186231970 5'GT 186231970 Upstream 62bp
chr1 223943292 223943292 1 + C T UCEC 223943279 + 223943259 223943299 41 TGCACCTTCCTGGTGGGGCTCATTCAGAAGCACCGACGGCG TGCACCTTCCTGGTGGGGCTCATTCAGAAGCACTGACGGCG < 41bp 1 0.0689949246507603 1 0.0876302421092987 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943279 chr1:223943292 stopgain 1.000 1 34 hm5C_associated_SNPs_41736 0 0 1 0 1 CAPN2 chr1:223943351 5'GT 223943351 Upstream 60bp
chr1 223943292 223943292 1 + C T UCEC 223943301 + 223943281 223943321 41 TTCAGAAGCACCGACGGCGGCAGAGGAAGATGGGCGAGGAC TTCAGAAGCACTGACGGCGGCAGAGGAAGATGGGCGAGGAC < 41bp 1 0.681656227313799 1 0.705839931964874 experiment 0.636687545372402 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943301 chr1:223943292 stopgain 1.000 1 12 hm5C_associated_SNPs_41737 0 0 1 0 1 CAPN2 chr1:223943351 5'GT 223943351 Upstream 60bp
chr14 97002279 97002279 1 + T G UCEC 97002283 + 97002263 97002303 41 ATACCCACAACAGAACTCCACGTACAATGTGTCCGTTTCAA ATACCCACAACAGAACGCCACGTACAATGTGTCCGTTTCAA < 41bp 1 0.0766484310602703 1 0.129134148359299 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97002283 chr14:97002279 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_41739 0 0 1 0 2 PAPOLA chr14:97002216 3'AG 97002216 Downstream 64bp
chr14 97002279 97002279 1 + T G UCEC 97002283 + 97002263 97002303 41 ATACCCACAACAGAACTCCACGTACAATGTGTCCGTTTCAA ATACCCACAACAGAACGCCACGTACAATGTGTCCGTTTCAA < 41bp 1 0.0766484310602703 1 0.129134148359299 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97002283 chr14:97002279 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_41739 0 0 1 0 2 PAPOLA chr14:97002336 5'GT 97002336 Upstream 58bp
chr8 87447753 87447753 1 + C T UCEC 87447738 + 87447718 87447758 41 TTTAGGTGGAAGCTTGCTCACTTCCGTTATTTGTGCCAGGT TTTAGGTGGAAGCTTGCTCACTTCCGTTATTTGTGTCAGGT < 41bp 1 0.254721662246247 1 0.0919767618179321 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WWP1 ENSG00000123124 CDS Human protein_coding chr8:87447738 chr8:87447753 synonymous SNV . 0 36 hm5C_associated_SNPs_41740 0 0 1 0 2 WWP1 chr8:87447681 3'AG 87447681 Downstream 73bp
chr8 87447753 87447753 1 + C T UCEC 87447738 + 87447718 87447758 41 TTTAGGTGGAAGCTTGCTCACTTCCGTTATTTGTGCCAGGT TTTAGGTGGAAGCTTGCTCACTTCCGTTATTTGTGTCAGGT < 41bp 1 0.254721662246247 1 0.0919767618179321 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WWP1 ENSG00000123124 CDS Human protein_coding chr8:87447738 chr8:87447753 synonymous SNV . 0 36 hm5C_associated_SNPs_41740 0 0 1 0 2 WWP1 chr8:87447756 5'GT 87447756 Upstream 4bp
chr7 94917919 94917919 1 + G A UCEC 94917917 + 94917897 94917937 41 CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA CCGTTCAGGAATGGAGTGTGCAACAGGTTTCTCACTGGTTA < 41bp 1 0.446392850277473 1 0.0900022387504578 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917917 chr7:94917919 synonymous SNV . 0 23 hm5C_associated_SNPs_41741 0 0 1 0 1 PPP1R9A chr7:94917848 3'AG 94917848 Downstream 72bp
chr7 156746931 156746931 1 + G T UCEC 156746911 + 156746891 156746931 41 GCTCTCATGGGTGCCTGCGTCACTGCCTCGGCCATGCCCAG GCTCTCATGGGTGCCTGCGTCACTGCCTCGGCCATGCCCAT < 41bp 1 0.520629086643166 1 0.339345991611481 experiment 0.958741826713668 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NOM1 ENSG00000146909 CDS Human protein_coding chr7:156746911 chr7:156746931 nonsynonymous SNV 0.854 1 41 hm5C_associated_SNPs_41744 0 0 1 0 1 NOM1 chr7:156746992 5'GT 156746992 Upstream 62bp
chr12 56536126 56536126 1 + C A UCEC 56536133 + 56536113 56536153 41 CCTCTCAGAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACC CCTCTCAGAGCTCATCGTGGCTGACCAGCTCTGCTTGGACC < 41bp 1 0.227376799722003 1 0.0555998384952545 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56536133 chr12:56536126 nonsynonymous SNV 0.178 2 14 hm5C_associated_SNPs_41746 0 0 1 0 2 ESYT1 chr12:56536069 3'AG 56536069 Downstream 58bp
chr12 56536126 56536126 1 + C A UCEC 56536133 + 56536113 56536153 41 CCTCTCAGAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACC CCTCTCAGAGCTCATCGTGGCTGACCAGCTCTGCTTGGACC < 41bp 1 0.227376799722003 1 0.0555998384952545 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56536133 chr12:56536126 nonsynonymous SNV 0.178 2 14 hm5C_associated_SNPs_41746 0 0 1 0 2 ESYT1 chr12:56536209 5'GT 56536209 Upstream 84bp
chr12 56536126 56536126 1 + C A UCEC 56536138 + 56536118 56536158 41 CAGAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACCGCTGG CAGAGCTCATCGTGGCTGACCAGCTCTGCTTGGACCGCTGG < 41bp 1 0.399350404347091 1 0.177325695753098 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56536138 chr12:56536126 nonsynonymous SNV 0.178 2 9 hm5C_associated_SNPs_41747 0 0 1 0 2 ESYT1 chr12:56536069 3'AG 56536069 Downstream 58bp
chr12 56536126 56536126 1 + C A UCEC 56536138 + 56536118 56536158 41 CAGAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACCGCTGG CAGAGCTCATCGTGGCTGACCAGCTCTGCTTGGACCGCTGG < 41bp 1 0.399350404347091 1 0.177325695753098 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56536138 chr12:56536126 nonsynonymous SNV 0.178 2 9 hm5C_associated_SNPs_41747 0 0 1 0 2 ESYT1 chr12:56536209 5'GT 56536209 Upstream 84bp
chr17 48631708 48631708 1 + G A UCEC 48631727 + 48631707 48631747 41 TGTGTGTGCCTATTGACCGCCTTTTCCGAGCGCATGCGTCG TATGTGTGCCTATTGACCGCCTTTTCCGAGCGCATGCGTCG < 41bp 1 0.0385182147708581 1 0.0193673670291901 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPATA20 ENSG00000006282 CDS Human protein_coding chr17:48631727 chr17:48631708 nonsynonymous SNV 0.997 2 2 hm5C_associated_SNPs_41752 0 0 1 0 1 SPATA20 chr17:48631612 3'AG 48631612 Downstream 97bp
chr19 52705261 52705261 1 + G A UCEC 52705272 + 52705252 52705292 41 AAAGGACCCGAAGTGAGCTTCTGCCTTTCCTTACAGGTAAC AAAGGACCCAAAGTGAGCTTCTGCCTTTCCTTACAGGTAAC < 41bp 1 0.278896412362497 1 0.320113122463226 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52705272 chr19:52705261 nonsynonymous SNV 0.980 2 10 hm5C_associated_SNPs_41754 0 0 1 0 2 PPP2R1A chr19:52705197 3'AG 52705197 Downstream 65bp
chr19 52705261 52705261 1 + G A UCEC 52705272 + 52705252 52705292 41 AAAGGACCCGAAGTGAGCTTCTGCCTTTCCTTACAGGTAAC AAAGGACCCAAAGTGAGCTTCTGCCTTTCCTTACAGGTAAC < 41bp 1 0.278896412362497 1 0.320113122463226 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52705272 chr19:52705261 nonsynonymous SNV 0.980 2 10 hm5C_associated_SNPs_41754 0 0 1 0 2 PPP2R1A chr19:52705287 5'GT 52705287 Upstream 27bp
chr20 31374349 31374349 1 + G T UCEC 31374361 + 31374341 31374381 41 CGGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCG CGGGAGAGTCACAGGCCTTCCCCACGTTCCACCCGAGGCCG < 41bp 1 0.302288905614431 1 0.43871220946312 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374361 chr20:31374349 nonsynonymous SNV 0.773 2 9 hm5C_associated_SNPs_41755 0 0 0 0 1 DNMT3B chr20:31374308 3'AG 31374308 Downstream 42bp
chr20 31374349 31374349 1 + G T UCEC 31374362 + 31374342 31374382 41 GGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCGG GGGAGAGTCACAGGCCTTCCCCACGTTCCACCCGAGGCCGG < 41bp 1 0.607246698347951 1 0.52160108089447 experiment 0.785506603304099 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374362 chr20:31374349 nonsynonymous SNV 0.773 2 8 hm5C_associated_SNPs_41756 0 0 0 0 1 DNMT3B chr20:31374308 3'AG 31374308 Downstream 42bp
chr17 48433483 48433483 1 + G A UCEC 48433472 + 48433452 48433492 41 TTCCACACGGTGCTGGAGAACAGCCTGGCCTGTGAGACCCT TTCCACACGGTGCTGGAGAACAGCCTGGCCTATGAGACCCT < 41bp 1 0.388829124941662 1 0.267741173505783 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48433472 chr17:48433483 nonsynonymous SNV 0.995 4 32 hm5C_associated_SNPs_41758 0 0 1 0 1 XYLT2 chr17:48433446 3'AG 48433446 Downstream 38bp
chr22 42301542 42301542 1 + C T UCEC 42301538 + 42301518 42301558 41 TCCTTCCTCTCCTCCCCGGGCCAGCGGGCAGTGCTGCTGGC TCCTTCCTCTCCTCCCCGGGCCAGTGGGCAGTGCTGCTGGC < 41bp 1 0.258896773465347 1 0.161682993173599 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42301538 chr22:42301542 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_41759 0 0 1 0 1 SREBF2 chr22:42301444 3'AG 42301444 Downstream 99bp
chr22 42301542 42301542 1 + C T UCEC 42301539 + 42301519 42301559 41 CCTTCCTCTCCTCCCCGGGCCAGCGGGCAGTGCTGCTGGCC CCTTCCTCTCCTCCCCGGGCCAGTGGGCAGTGCTGCTGGCC < 41bp 1 0.366291296610356 1 0.50411856174469 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42301539 chr22:42301542 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_41760 0 0 1 0 1 SREBF2 chr22:42301444 3'AG 42301444 Downstream 99bp
chr4 25396323 25396323 1 + G A UCEC 25396309 + 25396289 25396329 41 GTAGTGCTGAACTTCAGACTCTCTTGATGAATCAGTTAACA GTAGTGCTGAACTTCAGACTCTCTTGATGAATCAATTAACA < 41bp 1 0.20059627517003 1 0.110281109809875 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ANAPC4 ENSG00000053900 CDS Human protein_coding chr4:25396309 chr4:25396323 synonymous SNV . 0 35 hm5C_associated_SNPs_41762 0 0 1 0 2 ANAPC4 chr4:25396293 3'AG 25396293 Downstream 31bp
chr4 25396323 25396323 1 + G A UCEC 25396309 + 25396289 25396329 41 GTAGTGCTGAACTTCAGACTCTCTTGATGAATCAGTTAACA GTAGTGCTGAACTTCAGACTCTCTTGATGAATCAATTAACA < 41bp 1 0.20059627517003 1 0.110281109809875 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ANAPC4 ENSG00000053900 CDS Human protein_coding chr4:25396309 chr4:25396323 synonymous SNV . 0 35 hm5C_associated_SNPs_41762 0 0 1 0 2 ANAPC4 chr4:25396335 5'GT 25396335 Upstream 13bp
chr12 6879138 6879138 1 + G T UCEC 6879124 + 6879104 6879144 41 TGAGGAGGAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGG TGAGGAGGAAGAAGAAGAAACTGCCGAGGATGGATAGGAGG < 41bp 1 0.380178888483959 1 0.27869039773941 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMS ENSG00000159335 CDS Human protein_coding chr12:6879124 chr12:6879138 stopgain 1.000 0 35 hm5C_associated_SNPs_41763 0 0 1 1 2 PTMS chr12:6879087 3'AG 6879087 Downstream 52bp
chr12 6879138 6879138 1 + G T UCEC 6879124 + 6879104 6879144 41 TGAGGAGGAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGG TGAGGAGGAAGAAGAAGAAACTGCCGAGGATGGATAGGAGG < 41bp 1 0.380178888483959 1 0.27869039773941 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMS ENSG00000159335 CDS Human protein_coding chr12:6879124 chr12:6879138 stopgain 1.000 0 35 hm5C_associated_SNPs_41763 0 0 1 1 2 PTMS chr12:6879165 5'GT 6879165 Upstream 28bp
chr12 6879138 6879138 1 + G T UCEC 6879127 + 6879107 6879147 41 GGAGGAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGGAAG GGAGGAAGAAGAAGAAACTGCCGAGGATGGATAGGAGGAAG < 41bp 1 0.401487255442093 1 0.670178651809692 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMS ENSG00000159335 CDS Human protein_coding chr12:6879127 chr12:6879138 stopgain 1.000 0 32 hm5C_associated_SNPs_41764 0 0 1 1 2 PTMS chr12:6879087 3'AG 6879087 Downstream 52bp
chr12 6879138 6879138 1 + G T UCEC 6879127 + 6879107 6879147 41 GGAGGAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGGAAG GGAGGAAGAAGAAGAAACTGCCGAGGATGGATAGGAGGAAG < 41bp 1 0.401487255442093 1 0.670178651809692 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMS ENSG00000159335 CDS Human protein_coding chr12:6879127 chr12:6879138 stopgain 1.000 0 32 hm5C_associated_SNPs_41764 0 0 1 1 2 PTMS chr12:6879165 5'GT 6879165 Upstream 28bp
chr12 6879138 6879138 1 + G T UCEC 6879128 + 6879108 6879148 41 GAGGAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGGAAGA GAGGAAGAAGAAGAAACTGCCGAGGATGGATAGGAGGAAGA < 41bp 1 0.685873531600067 1 0.794931769371033 experiment 0.628252936799867 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMS ENSG00000159335 CDS Human protein_coding chr12:6879128 chr12:6879138 stopgain 1.000 0 31 hm5C_associated_SNPs_41765 0 0 1 1 2 PTMS chr12:6879087 3'AG 6879087 Downstream 52bp
chr12 6879138 6879138 1 + G T UCEC 6879128 + 6879108 6879148 41 GAGGAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGGAAGA GAGGAAGAAGAAGAAACTGCCGAGGATGGATAGGAGGAAGA < 41bp 1 0.685873531600067 1 0.794931769371033 experiment 0.628252936799867 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMS ENSG00000159335 CDS Human protein_coding chr12:6879128 chr12:6879138 stopgain 1.000 0 31 hm5C_associated_SNPs_41765 0 0 1 1 2 PTMS chr12:6879165 5'GT 6879165 Upstream 28bp
chr2 3627702 3627702 1 + G A UCEC 3627693 + 3627673 3627713 41 TGCTTACCTTTTAAACTATTCTTTTAGCCGTACTCTGACAG TGCTTACCTTTTAAACTATTCTTTTAGCCATACTCTGACAG < 41bp 1 0.0850283282549033 1 0.0231726467609406 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS7 ENSG00000171863 CDS Human protein_coding chr2:3627693 chr2:3627702 nonsynonymous SNV 0.482 2 30 hm5C_associated_SNPs_41767 0 0 1 0 1 RPS7 chr2:3627700 3'AG 3627700 Downstream 3bp
chr3 13672884 13672884 1 + C T UCEC 13672900 + 13672880 13672920 41 TCAACGTGCCAGGGAGCTACCAGTGTGCATGCCCTGAGCAG TCAATGTGCCAGGGAGCTACCAGTGTGCATGCCCTGAGCAG < 41bp 1 0.607734523357273 1 0.514852464199066 experiment 0.784530953285453 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13672900 chr3:13672884 synonymous SNV . 0 5 hm5C_associated_SNPs_41768 0 0 0 0 1 FBLN2 chr3:13672829 3'AG 13672829 Downstream 56bp
chr22 31998611 31998611 1 + C T UCEC 31998614 + 31998594 31998634 41 CCATCCTTCACGCAGAGCGACAGCTTCTGTATAGGTCTTGG CCATCCTTCACGCAGAGTGACAGCTTCTGTATAGGTCTTGG < 41bp 1 0.241636618917866 1 0.160936117172241 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SFI1 ENSG00000198089 CDS Human protein_coding chr22:31998614 chr22:31998611 stopgain 0.364 0 18 hm5C_associated_SNPs_41769 0 0 0 0 1 SFI1 chr22:31998593 3'AG 31998593 Downstream 19bp
chr19 42373186 42373186 1 + C T UCEC 42373193 + 42373173 42373213 41 GTCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGC GTCAGAGAAACGGTGTCATGCCCAGCCACTTCAGCCGAGGC < 41bp 1 0.281718117043469 1 0.123301088809967 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373193 chr19:42373186 nonsynonymous SNV 0.990 1 14 hm5C_associated_SNPs_41770 0 0 1 0 2 RPS19 chr19:42373101 3'AG 42373101 Downstream 86bp
chr19 42373186 42373186 1 + C T UCEC 42373193 + 42373173 42373213 41 GTCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGC GTCAGAGAAACGGTGTCATGCCCAGCCACTTCAGCCGAGGC < 41bp 1 0.281718117043469 1 0.123301088809967 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373193 chr19:42373186 nonsynonymous SNV 0.990 1 14 hm5C_associated_SNPs_41770 0 0 1 0 2 RPS19 chr19:42373284 5'GT 42373284 Upstream 99bp
chr19 42373186 42373186 1 + C T UCEC 42373194 + 42373174 42373214 41 TCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCT TCAGAGAAACGGTGTCATGCCCAGCCACTTCAGCCGAGGCT < 41bp 1 0.254849635961714 1 0.190955430269241 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373194 chr19:42373186 nonsynonymous SNV 0.990 1 13 hm5C_associated_SNPs_41771 0 0 1 0 2 RPS19 chr19:42373101 3'AG 42373101 Downstream 86bp
chr19 42373186 42373186 1 + C T UCEC 42373194 + 42373174 42373214 41 TCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCT TCAGAGAAACGGTGTCATGCCCAGCCACTTCAGCCGAGGCT < 41bp 1 0.254849635961714 1 0.190955430269241 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373194 chr19:42373186 nonsynonymous SNV 0.990 1 13 hm5C_associated_SNPs_41771 0 0 1 0 2 RPS19 chr19:42373284 5'GT 42373284 Upstream 99bp
chr19 42373186 42373186 1 + C T UCEC 42373198 + 42373178 42373218 41 AGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAA AGAAACGGTGTCATGCCCAGCCACTTCAGCCGAGGCTCCAA < 41bp 1 0.167697793791989 1 0.218566119670868 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373198 chr19:42373186 nonsynonymous SNV 0.990 1 9 hm5C_associated_SNPs_41772 0 0 1 0 2 RPS19 chr19:42373101 3'AG 42373101 Downstream 86bp
chr19 42373186 42373186 1 + C T UCEC 42373198 + 42373178 42373218 41 AGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAA AGAAACGGTGTCATGCCCAGCCACTTCAGCCGAGGCTCCAA < 41bp 1 0.167697793791989 1 0.218566119670868 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373198 chr19:42373186 nonsynonymous SNV 0.990 1 9 hm5C_associated_SNPs_41772 0 0 1 0 2 RPS19 chr19:42373284 5'GT 42373284 Upstream 99bp
chr19 42373186 42373186 1 + C T UCEC 42373199 + 42373179 42373219 41 GAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAAG GAAACGGTGTCATGCCCAGCCACTTCAGCCGAGGCTCCAAG < 41bp 1 0.25312967487762 1 0.331703394651413 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373199 chr19:42373186 nonsynonymous SNV 0.990 1 8 hm5C_associated_SNPs_41773 0 0 1 0 2 RPS19 chr19:42373101 3'AG 42373101 Downstream 86bp
chr19 42373186 42373186 1 + C T UCEC 42373199 + 42373179 42373219 41 GAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAAG GAAACGGTGTCATGCCCAGCCACTTCAGCCGAGGCTCCAAG < 41bp 1 0.25312967487762 1 0.331703394651413 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373199 chr19:42373186 nonsynonymous SNV 0.990 1 8 hm5C_associated_SNPs_41773 0 0 1 0 2 RPS19 chr19:42373284 5'GT 42373284 Upstream 99bp
chr9 139244096 139244096 1 + C T UCEC 139244104 + 139244084 139244124 41 AGCAGGGACTCGCTACCCCTCCCCGTGAGGAGCAGGAAGTA AGCAGGGACTCGTTACCCCTCCCCGTGAGGAGCAGGAAGTA < 41bp 1 0.345868644417039 1 0.505221247673035 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139244104 chr9:139244096 synonymous SNV . 0 13 hm5C_associated_SNPs_41774 0 0 0 0 1 GPSM1 chr9:139244039 3'AG 139244039 Downstream 58bp
chr19 13054422 13054422 1 + C T UCEC 13054404 + 13054384 13054424 41 ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAATGA < 41bp 1 0.581617850628549 1 0.0948998928070068 experiment 0.836764298742902 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054404 chr19:13054422 synonymous SNV . 0 39 hm5C_associated_SNPs_41775 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 72bp
chr19 13054422 13054422 1 + C T UCEC 13054404 + 13054384 13054424 41 ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAATGA < 41bp 1 0.581617850628549 1 0.0948998928070068 experiment 0.836764298742902 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054404 chr19:13054422 synonymous SNV . 0 39 hm5C_associated_SNPs_41775 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 22bp
chr19 13054422 13054422 1 + C T UCEC 13054406 + 13054386 13054426 41 CACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGAGA CACCAACGATGAGGCATACGCTGAGGAGTTTGGCAATGAGA < 41bp 1 0.684473064250232 1 0.215155065059662 experiment 0.631053871499536 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054406 chr19:13054422 synonymous SNV . 0 37 hm5C_associated_SNPs_41776 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 72bp
chr19 13054422 13054422 1 + C T UCEC 13054406 + 13054386 13054426 41 CACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGAGA CACCAACGATGAGGCATACGCTGAGGAGTTTGGCAATGAGA < 41bp 1 0.684473064250232 1 0.215155065059662 experiment 0.631053871499536 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054406 chr19:13054422 synonymous SNV . 0 37 hm5C_associated_SNPs_41776 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 22bp
chr19 13054422 13054422 1 + C T UCEC 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTGAGGAGTTTGGCAATGAGACGTGGGGCGTAAC < 41bp 1 0.412209204730871 1 0.298320233821869 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054422 synonymous SNV . 0 24 hm5C_associated_SNPs_41777 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 72bp
chr19 13054422 13054422 1 + C T UCEC 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTGAGGAGTTTGGCAATGAGACGTGGGGCGTAAC < 41bp 1 0.412209204730871 1 0.298320233821869 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054422 synonymous SNV . 0 24 hm5C_associated_SNPs_41777 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 22bp
chr19 13054422 13054422 1 + C T UCEC 13054427 + 13054407 13054447 41 TGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA TGAGGAGTTTGGCAATGAGACGTGGGGCGTAACAAAGGTGA < 41bp 1 0.713718766148639 1 0.510590791702271 experiment 0.572562467702721 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054427 chr19:13054422 synonymous SNV . 0 16 hm5C_associated_SNPs_41778 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 72bp
chr19 13054422 13054422 1 + C T UCEC 13054427 + 13054407 13054447 41 TGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA TGAGGAGTTTGGCAATGAGACGTGGGGCGTAACAAAGGTGA < 41bp 1 0.713718766148639 1 0.510590791702271 experiment 0.572562467702721 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054427 chr19:13054422 synonymous SNV . 0 16 hm5C_associated_SNPs_41778 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 22bp
chr7 99702529 99702529 1 + G T UCEC 99702547 + 99702527 99702567 41 GAGATTCGGCTCAAGAGCTTCCTTCCTAGCGGCTCTGGTGA GATATTCGGCTCAAGAGCTTCCTTCCTAGCGGCTCTGGTGA < 41bp 1 0.0253882551929494 1 0.070514440536499 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99702547 chr7:99702529 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_41782 0 0 1 0 2 AP4M1 chr7:99702497 3'AG 99702497 Downstream 33bp
chr7 99702529 99702529 1 + G T UCEC 99702547 + 99702527 99702567 41 GAGATTCGGCTCAAGAGCTTCCTTCCTAGCGGCTCTGGTGA GATATTCGGCTCAAGAGCTTCCTTCCTAGCGGCTCTGGTGA < 41bp 1 0.0253882551929494 1 0.070514440536499 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99702547 chr7:99702529 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_41782 0 0 1 0 2 AP4M1 chr7:99702563 5'GT 99702563 Upstream 35bp
chr16 69353373 69353373 1 + G C UCEC 69353363 + 69353343 69353383 41 AAATCCTACCTGGCCAAAGCCGTGGCAACAGAGGCCAACAA AAATCCTACCTGGCCAAAGCCGTGGCAACACAGGCCAACAA < 41bp 1 0.657900941847595 1 0.733780741691589 experiment 0.684198116304809 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS4A ENSG00000132612;ENSG00000260914 CDS Human other chr16:69353363 chr16:69353373 nonsynonymous SNV 0.928 5 31 hm5C_associated_SNPs_41783 0 0 1 0 2 VPS4A chr16:69353290 3'AG 69353290 Downstream 84bp
chr16 69353373 69353373 1 + G C UCEC 69353363 + 69353343 69353383 41 AAATCCTACCTGGCCAAAGCCGTGGCAACAGAGGCCAACAA AAATCCTACCTGGCCAAAGCCGTGGCAACACAGGCCAACAA < 41bp 1 0.657900941847595 1 0.733780741691589 experiment 0.684198116304809 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS4A ENSG00000132612;ENSG00000260914 CDS Human other chr16:69353363 chr16:69353373 nonsynonymous SNV 0.928 5 31 hm5C_associated_SNPs_41783 0 0 1 0 2 VPS4A chr16:69353446 5'GT 69353446 Upstream 74bp
chr1 237044065 237044065 1 + G A UCEC 237044057 + 237044037 237044077 41 TCTGACCCTTCTTTTTAGAACCCACACAGCAGTTAAAATAG TCTGACCCTTCTTTTTAGAACCCACACAACAGTTAAAATAG < 41bp 1 0.0275814994115586 1 0.101504981517792 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MTR ENSG00000116984 CDS Human protein_coding chr1:237044057 chr1:237044065 nonsynonymous SNV 0.983 4 29 hm5C_associated_SNPs_41784 0 0 1 0 2 MTR chr1:237044055 3'AG 237044055 Downstream 11bp
chr1 237044065 237044065 1 + G A UCEC 237044057 + 237044037 237044077 41 TCTGACCCTTCTTTTTAGAACCCACACAGCAGTTAAAATAG TCTGACCCTTCTTTTTAGAACCCACACAACAGTTAAAATAG < 41bp 1 0.0275814994115586 1 0.101504981517792 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MTR ENSG00000116984 CDS Human protein_coding chr1:237044057 chr1:237044065 nonsynonymous SNV 0.983 4 29 hm5C_associated_SNPs_41784 0 0 1 0 2 MTR chr1:237044136 5'GT 237044136 Upstream 72bp
chr2 231931714 231931714 1 + C T UCEC 231931696 + 231931676 231931716 41 GGAGAAAAAAAACCAATTGACCAGAGATTGGAAGGCATCGT GGAGAAAAAAAACCAATTGACCAGAGATTGGAAGGCATTGT < 41bp 1 0.568247637204165 1 0.0565168559551239 experiment 0.863504725591669 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231931696 chr2:231931714 synonymous SNV . 0 39 hm5C_associated_SNPs_41785 0 0 1 0 1 PSMD1 chr2:231931620 3'AG 231931620 Downstream 95bp
chr20 35857048 35857048 1 + C A UCEC 35857050 + 35857030 35857070 41 CAAGTTTGAACTGGATACCTCTGAAAGAAAGATTGAATTTG CAAGTTTGAACTGGATACATCTGAAAGAAAGATTGAATTTG < 41bp 1 0.595311462003828 1 0.248164415359497 experiment 0.809377075992345 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35857050 chr20:35857048 synonymous SNV . 0 19 hm5C_associated_SNPs_41786 0 0 1 0 2 RPN2 chr20:35856953 3'AG 35856953 Downstream 96bp
chr20 35857048 35857048 1 + C A UCEC 35857050 + 35857030 35857070 41 CAAGTTTGAACTGGATACCTCTGAAAGAAAGATTGAATTTG CAAGTTTGAACTGGATACATCTGAAAGAAAGATTGAATTTG < 41bp 1 0.595311462003828 1 0.248164415359497 experiment 0.809377075992345 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35857050 chr20:35857048 synonymous SNV . 0 19 hm5C_associated_SNPs_41786 0 0 1 0 2 RPN2 chr20:35857147 5'GT 35857147 Upstream 100bp
chr2 97875435 97875435 1 + C A UCEC 97875436 + 97875416 97875456 41 AGTGTCTTCTCGGAAAAAACCAGCCTTGAAGGTAATGAAAC AGTGTCTTCTCGGAAAAAAACAGCCTTGAAGGTAATGAAAC < 41bp 1 0.30094449812287 1 0.347746133804321 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD36 ENSG00000135976 CDS Human protein_coding chr2:97875436 chr2:97875435 nonsynonymous SNV 0.001 1 20 hm5C_associated_SNPs_41790 0 0 0 0 1 ANKRD36 chr2:97875446 5'GT 97875446 Upstream 12bp
chr20 31374366 31374366 1 + G A UCEC 31374361 + 31374341 31374381 41 CGGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCG CGGGAGAGGCACAGGCCTTCCCCACATTCCACCCGAGGCCG < 41bp 1 0.296269880217913 1 0.440991252660751 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374361 chr20:31374366 nonsynonymous SNV 0.114 4 26 hm5C_associated_SNPs_41791 0 0 0 0 1 DNMT3B chr20:31374308 3'AG 31374308 Downstream 59bp
chr20 31374366 31374366 1 + G A UCEC 31374362 + 31374342 31374382 41 GGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCGG GGGAGAGGCACAGGCCTTCCCCACATTCCACCCGAGGCCGG < 41bp 1 0.735541041614189 1 0.514460384845734 experiment 0.528917916771622 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374362 chr20:31374366 nonsynonymous SNV 0.114 4 25 hm5C_associated_SNPs_41792 0 0 0 0 1 DNMT3B chr20:31374308 3'AG 31374308 Downstream 59bp
chr2 183616835 183616835 1 + C T UCEC 183616850 + 183616830 183616870 41 AGTTACGAAGAGCATCAAATCTTCTTTATGGTCAGCTTAAG AGTTATGAAGAGCATCAAATCTTCTTTATGGTCAGCTTAAG < 41bp 1 0.395204138346272 1 0.328715145587921 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183616850 chr2:183616835 stopgain 0.999 1 6 hm5C_associated_SNPs_41794 0 0 1 0 2 DNAJC10 chr2:183616799 3'AG 183616799 Downstream 37bp
chr2 183616835 183616835 1 + C T UCEC 183616850 + 183616830 183616870 41 AGTTACGAAGAGCATCAAATCTTCTTTATGGTCAGCTTAAG AGTTATGAAGAGCATCAAATCTTCTTTATGGTCAGCTTAAG < 41bp 1 0.395204138346272 1 0.328715145587921 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183616850 chr2:183616835 stopgain 0.999 1 6 hm5C_associated_SNPs_41794 0 0 1 0 2 DNAJC10 chr2:183616915 5'GT 183616915 Upstream 81bp
chr9 20990202 20990202 1 + C T UCEC 20990218 + 20990198 20990238 41 GCCTCAGTGCCAGTTGGTTGCCATGGCATCAGGAGAATGGC GCCTTAGTGCCAGTTGGTTGCCATGGCATCAGGAGAATGGC < 41bp 1 0.146126759128015 1 0.0666433572769165 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20990218 chr9:20990202 synonymous SNV . 0 5 hm5C_associated_SNPs_41795 0 0 0 0 1 FOCAD chr9:20990122 3'AG 20990122 Downstream 81bp
chrX 70516422 70516422 1 + C T UCEC 70516419 + 70516399 70516439 41 TTGTTCTTTCTTCCAGATTTCCTCGTCCTGTGACTGTGGAG TTGTTCTTTCTTCCAGATTTCCTTGTCCTGTGACTGTGGAG < 41bp 1 0.0442967169349459 1 0.0536989569664001 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516419 chrX:70516422 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_41797 0 0 1 0 2 NONO chrX:70516415 3'AG 70516415 Downstream 8bp
chrX 70516422 70516422 1 + C T UCEC 70516419 + 70516399 70516439 41 TTGTTCTTTCTTCCAGATTTCCTCGTCCTGTGACTGTGGAG TTGTTCTTTCTTCCAGATTTCCTTGTCCTGTGACTGTGGAG < 41bp 1 0.0442967169349459 1 0.0536989569664001 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516419 chrX:70516422 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_41797 0 0 1 0 2 NONO chrX:70516510 5'GT 70516510 Upstream 89bp
chrX 70516422 70516422 1 + C T UCEC 70516440 + 70516420 70516460 41 CTCGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT CTTGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT < 41bp 1 0.12112932995616 1 0.0692953169345856 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516440 chrX:70516422 nonsynonymous SNV 0.996 2 3 hm5C_associated_SNPs_41798 0 0 1 0 2 NONO chrX:70516415 3'AG 70516415 Downstream 8bp
chrX 70516422 70516422 1 + C T UCEC 70516440 + 70516420 70516460 41 CTCGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT CTTGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT < 41bp 1 0.12112932995616 1 0.0692953169345856 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516440 chrX:70516422 nonsynonymous SNV 0.996 2 3 hm5C_associated_SNPs_41798 0 0 1 0 2 NONO chrX:70516510 5'GT 70516510 Upstream 89bp
chr1 12061536 12061536 1 + G T UCEC 12061544 + 12061524 12061564 41 TCCCAGGCCGGGGACCGCATCTTCTTTGTGTCTGCTAAGGA TCCCAGGCCGGGTACCGCATCTTCTTTGTGTCTGCTAAGGA < 41bp 1 0.223889508997605 1 0.0602515339851379 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061544 chr1:12061536 nonsynonymous SNV 0.848 3 13 hm5C_associated_SNPs_41799 0 0 1 0 2 MFN2 chr1:12061458 3'AG 12061458 Downstream 79bp
chr1 12061536 12061536 1 + G T UCEC 12061544 + 12061524 12061564 41 TCCCAGGCCGGGGACCGCATCTTCTTTGTGTCTGCTAAGGA TCCCAGGCCGGGTACCGCATCTTCTTTGTGTCTGCTAAGGA < 41bp 1 0.223889508997605 1 0.0602515339851379 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061544 chr1:12061536 nonsynonymous SNV 0.848 3 13 hm5C_associated_SNPs_41799 0 0 1 0 2 MFN2 chr1:12061611 5'GT 12061611 Upstream 76bp
chr10 5963489 5963489 1 + G A UCEC 5963508 + 5963488 5963528 41 CGGGTGACGGAAGGGGAATTCCCTTCAAGGATACATTTGAT CAGGTGACGGAAGGGGAATTCCCTTCAAGGATACATTTGAT < 41bp 1 0.0905634877755126 1 0.539206147193909 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963508 chr10:5963489 nonsynonymous SNV 0.815 4 2 hm5C_associated_SNPs_41801 0 0 1 0 2 FBXO18 chr10:5963411 3'AG 5963411 Downstream 79bp
chr10 5963489 5963489 1 + G A UCEC 5963508 + 5963488 5963528 41 CGGGTGACGGAAGGGGAATTCCCTTCAAGGATACATTTGAT CAGGTGACGGAAGGGGAATTCCCTTCAAGGATACATTTGAT < 41bp 1 0.0905634877755126 1 0.539206147193909 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963508 chr10:5963489 nonsynonymous SNV 0.815 4 2 hm5C_associated_SNPs_41801 0 0 1 0 2 FBXO18 chr10:5963532 5'GT 5963532 Upstream 44bp
chr2 27460321 27460321 1 + G A UCEC 27460341 + 27460321 27460361 41 GCTGCCCTGGCTGGGGGTATCACCATGGTGTGTGCCATGCC ACTGCCCTGGCTGGGGGTATCACCATGGTGTGTGCCATGCC < 41bp 1 0.776699124273806 1 0.862248778343201 experiment 0.446601751452388 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27460341 chr2:27460321 nonsynonymous SNV 0.987 3 1 hm5C_associated_SNPs_41807 0 0 1 0 2 CAD chr2:27460247 3'AG 27460247 Downstream 75bp
chr2 27460321 27460321 1 + G A UCEC 27460341 + 27460321 27460361 41 GCTGCCCTGGCTGGGGGTATCACCATGGTGTGTGCCATGCC ACTGCCCTGGCTGGGGGTATCACCATGGTGTGTGCCATGCC < 41bp 1 0.776699124273806 1 0.862248778343201 experiment 0.446601751452388 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27460341 chr2:27460321 nonsynonymous SNV 0.987 3 1 hm5C_associated_SNPs_41807 0 0 1 0 2 CAD chr2:27460413 5'GT 27460413 Upstream 93bp
chr6 26446161 26446161 1 + C A UCEC 26446158 + 26446138 26446178 41 TCTGGTGGGGGTGTATCCTGCATCATCAGAAATTCCCTCCT TCTGGTGGGGGTGTATCCTGCATAATCAGAAATTCCCTCCT < 41bp 1 0.620873453523417 1 0.282510936260223 experiment 0.758253092953167 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BTN3A3 ENSG00000111801 CDS Human protein_coding chr6:26446158 chr6:26446161 synonymous SNV . 0 24 hm5C_associated_SNPs_41808 0 0 0 0 1 BTN3A3 chr6:26446213 5'GT 26446213 Upstream 53bp
chr14 56119753 56119753 1 + G T UCEC 56119741 + 56119721 56119761 41 CTATTCTTTTTAAGGATCTTCAAGAAGAAAATGAATCTTTA CTATTCTTTTTAAGGATCTTCAAGAAGAAAATTAATCTTTA < 41bp 1 0.490147374132 1 0.753304243087769 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 CDS Human protein_coding chr14:56119741 chr14:56119753 stopgain 0.987 0 33 hm5C_associated_SNPs_41809 0 0 1 0 2 KTN1 chr14:56119735 3'AG 56119735 Downstream 19bp
chr14 56119753 56119753 1 + G T UCEC 56119741 + 56119721 56119761 41 CTATTCTTTTTAAGGATCTTCAAGAAGAAAATGAATCTTTA CTATTCTTTTTAAGGATCTTCAAGAAGAAAATTAATCTTTA < 41bp 1 0.490147374132 1 0.753304243087769 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 CDS Human protein_coding chr14:56119741 chr14:56119753 stopgain 0.987 0 33 hm5C_associated_SNPs_41809 0 0 1 0 2 KTN1 chr14:56119803 5'GT 56119803 Upstream 51bp
chr15 25220519 25220519 1 + T C UCEC 25220529 + 25220509 25220549 41 TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGA TTGGCAAGAGCAGCAAGATGCTGCAGCACATTGACTATAGA < 41bp 1 0.62311176284472 1 0.552311778068542 experiment 0.75377647431056 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25220529 chr15:25220519 synonymous SNV . 0 11 hm5C_associated_SNPs_41810 0 0 1 2 1 SNRPN chr15:25220505 3'AG 25220505 Downstream 15bp
chr19 10657581 10657581 1 + G A UCEC 10657575 + 10657555 10657595 41 GCTGTCAGGGTCAGCCTCTCCCAGCCGGTACCATGGGCCTG GCTGTCAGGGTCAGCCTCTCCCAGCCAGTACCATGGGCCTG < 41bp 1 0.419507125082789 1 0.642822504043579 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATG4D ENSG00000130734 CDS Human protein_coding chr19:10657575 chr19:10657581 nonsynonymous SNV 0.036 1 27 hm5C_associated_SNPs_41811 0 0 1 0 1 ATG4D chr19:10657515 3'AG 10657515 Downstream 67bp
chr3 111667872 111667872 1 + G A UCEC 111667867 + 111667847 111667887 41 GTTTCCTGCTGATGCTGATGCTGTTGCCACTGAGCCTGCCA GTTTCCTGCTGATGCTGATGCTGTTACCACTGAGCCTGCCA < 41bp 1 0.204370412942683 1 0.0804378688335419 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111667867 chr3:111667872 nonsynonymous SNV 0.959 0 26 hm5C_associated_SNPs_41812 0 0 1 0 2 PHLDB2 chr3:111667779 3'AG 111667779 Downstream 94bp
chr3 111667872 111667872 1 + G A UCEC 111667867 + 111667847 111667887 41 GTTTCCTGCTGATGCTGATGCTGTTGCCACTGAGCCTGCCA GTTTCCTGCTGATGCTGATGCTGTTACCACTGAGCCTGCCA < 41bp 1 0.204370412942683 1 0.0804378688335419 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111667867 chr3:111667872 nonsynonymous SNV 0.959 0 26 hm5C_associated_SNPs_41812 0 0 1 0 2 PHLDB2 chr3:111667922 5'GT 111667922 Upstream 51bp
chr10 60549133 60549133 1 + T C UCEC 60549151 + 60549131 60549171 41 TTTCAGTATCATTTAAACAGCGTTCCCGAATGTATGGTGCT TTCCAGTATCATTTAAACAGCGTTCCCGAATGTATGGTGCT < 41bp 1 0.0106049438341899 1 0.0555595755577087 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60549151 chr10:60549133 nonsynonymous SNV 0.999 1 3 hm5C_associated_SNPs_41813 0 0 1 0 1 BICC1 chr10:60549216 5'GT 60549216 Upstream 84bp
chr10 1090054 1090054 1 - G A UCEC 1090038 - 1090018 1090058 41 ACCTCGACAAGCAACAGGTTCAACTCCTGGCAGAGATGTGT ACCTTGACAAGCAACAGGTTCAACTCCTGGCAGAGATGTGT < 41bp 1 0.127956028581449 1 0.0865922272205353 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IDI1 ENSG00000067064 CDS Human protein_coding chr10:1090038 chr10:1090054 synonymous SNV . 0 5 hm5C_associated_SNPs_41814 0 0 1 0 1 IDI1 chr10:1090111 3'AG 1090111 Downstream 58bp
chr4 144390258 144390258 1 + C A UCEC 144390263 + 144390243 144390283 41 TGACCAACAGAAGACCTTGGCTCTAAAGAGTACCCGGGAAG TGACCAACAGAAGACATTGGCTCTAAAGAGTACCCGGGAAG < 41bp 1 0.622226040163296 1 0.774279475212097 experiment 0.755547919673407 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control GAB1 ENSG00000109458 CDS Human protein_coding chr4:144390263 chr4:144390258 synonymous SNV . 0 16 hm5C_associated_SNPs_41816 0 0 0 0 1 GAB1 chr4:144390184 3'AG 144390184 Downstream 75bp
chr12 7080190 7080190 1 + G A UCEC 7080174 + 7080154 7080194 41 ATGCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAAC ATGCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGAAAAC < 41bp 1 0.180560110345468 1 0.0616549551486969 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080174 chr12:7080190 nonsynonymous SNV 0.974 0 37 hm5C_associated_SNPs_41817 0 0 1 0 1 EMG1 chr12:7080253 5'GT 7080253 Upstream 64bp
chr12 7080190 7080190 1 + G A UCEC 7080176 + 7080156 7080196 41 GCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAA GCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGAAAACAA < 41bp 1 0.17514771952947 1 0.0704514682292938 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080176 chr12:7080190 nonsynonymous SNV 0.974 0 35 hm5C_associated_SNPs_41818 0 0 1 0 1 EMG1 chr12:7080253 5'GT 7080253 Upstream 64bp
chr12 7080190 7080190 1 + G A UCEC 7080177 + 7080157 7080197 41 CTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAAG CTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGAAAACAAG < 41bp 1 0.344642898314191 1 0.121934950351715 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080177 chr12:7080190 nonsynonymous SNV 0.974 0 34 hm5C_associated_SNPs_41819 0 0 1 0 1 EMG1 chr12:7080253 5'GT 7080253 Upstream 64bp
chr11 65338915 65338915 1 + G A UCEC 65338926 + 65338906 65338946 41 CTGGCCTCAGCCTCAGAGCTCCCCCTGGGCTCTCGACCTGC CTGGCCTCAACCTCAGAGCTCCCCCTGGGCTCTCGACCTGC < 41bp 1 0.23406916917221 1 0.0193994641304016 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SSSCA1 ENSG00000173465 CDS Human protein_coding chr11:65338926 chr11:65338915 nonsynonymous SNV 0.000 0 10 hm5C_associated_SNPs_41820 0 0 0 0 1 SSSCA1 chr11:65338862 3'AG 65338862 Downstream 54bp
chr12 21598302 21598302 1 + T G UCEC 21598304 + 21598284 21598324 41 TCTAAAATATTGGAAGAATTCGATGTTGAAGAACAATCAAG TCTAAAATATTGGAAGAAGTCGATGTTGAAGAACAATCAAG < 41bp 1 0.588290451551355 1 0.552077770233154 experiment 0.82341909689729 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PYROXD1 ENSG00000121350 CDS Human protein_coding chr12:21598304 chr12:21598302 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_41821 0 0 1 0 2 PYROXD1 chr12:21598281 3'AG 21598281 Downstream 22bp
chr12 21598302 21598302 1 + T G UCEC 21598304 + 21598284 21598324 41 TCTAAAATATTGGAAGAATTCGATGTTGAAGAACAATCAAG TCTAAAATATTGGAAGAAGTCGATGTTGAAGAACAATCAAG < 41bp 1 0.588290451551355 1 0.552077770233154 experiment 0.82341909689729 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PYROXD1 ENSG00000121350 CDS Human protein_coding chr12:21598304 chr12:21598302 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_41821 0 0 1 0 2 PYROXD1 chr12:21598400 5'GT 21598400 Upstream 99bp
chr4 57876569 57876569 1 + C T UCEC 57876563 + 57876543 57876583 41 CTTTTGCGTCTACTCTTTCTCACCTGCGTCGTTTAAATTCT CTTTTGCGTCTACTCTTTCTCACCTGTGTCGTTTAAATTCT < 41bp 1 0.671668332550383 1 0.342612385749817 experiment 0.656663334899233 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57876563 chr4:57876569 nonsynonymous SNV 0.998 5 27 hm5C_associated_SNPs_41824 0 0 1 0 1 POLR2B chr4:57876527 3'AG 57876527 Downstream 43bp
chr1 222806514 222806514 1 + G A UCEC 222806499 + 222806479 222806519 41 CTATTGATGCAAACAAGCAACCAGAGACAGCCGCCGAAGAG CTATTGATGCAAACAAGCAACCAGAGACAGCCGCCAAAGAG < 41bp 1 0.547278526531355 1 0.319833993911743 experiment 0.905442946937289 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MIA3 ENSG00000154305 CDS Human protein_coding chr1:222806499 chr1:222806514 nonsynonymous SNV 0.021 1 36 hm5C_associated_SNPs_41825 0 0 1 0 2 MIA3 chr1:222806446 3'AG 222806446 Downstream 69bp
chr1 222806514 222806514 1 + G A UCEC 222806499 + 222806479 222806519 41 CTATTGATGCAAACAAGCAACCAGAGACAGCCGCCGAAGAG CTATTGATGCAAACAAGCAACCAGAGACAGCCGCCAAAGAG < 41bp 1 0.547278526531355 1 0.319833993911743 experiment 0.905442946937289 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MIA3 ENSG00000154305 CDS Human protein_coding chr1:222806499 chr1:222806514 nonsynonymous SNV 0.021 1 36 hm5C_associated_SNPs_41825 0 0 1 0 2 MIA3 chr1:222806591 5'GT 222806591 Upstream 78bp
chr2 30756154 30756154 1 + C T UCEC 30756147 + 30756127 30756167 41 TCAGATTGGAGAAAATTTGCCTCAAAGCGAGTCTCAAAGGT TCAGATTGGAGAAAATTTGCCTCAAAGTGAGTCTCAAAGGT < 41bp 1 0.67698440783257 1 0.596725702285767 experiment 0.646031184334861 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LCLAT1 ENSG00000172954 CDS Human protein_coding chr2:30756147 chr2:30756154 nonsynonymous SNV 0.983 2 28 hm5C_associated_SNPs_41826 0 0 1 0 1 LCLAT1 chr2:30756180 5'GT 30756180 Upstream 27bp
chr11 62545508 62545508 1 + A G UCEC 62545497 + 62545477 62545517 41 GCACTGCCCATGCGCCCCGCCAGGGAGGGTGAACTCTACTT GCACTGCCCATGCGCCCCGCCAGGGAGGGTGGACTCTACTT < 41bp 1 0.775389876720774 1 0.873136162757874 experiment 0.449220246558452 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF6L ENSG00000162227 CDS Human protein_coding chr11:62545497 chr11:62545508 nonsynonymous SNV 0.995 2 32 hm5C_associated_SNPs_41828 0 0 1 0 2 TAF6L chr11:62545450 3'AG 62545450 Downstream 59bp
chr11 62545508 62545508 1 + A G UCEC 62545497 + 62545477 62545517 41 GCACTGCCCATGCGCCCCGCCAGGGAGGGTGAACTCTACTT GCACTGCCCATGCGCCCCGCCAGGGAGGGTGGACTCTACTT < 41bp 1 0.775389876720774 1 0.873136162757874 experiment 0.449220246558452 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF6L ENSG00000162227 CDS Human protein_coding chr11:62545497 chr11:62545508 nonsynonymous SNV 0.995 2 32 hm5C_associated_SNPs_41828 0 0 1 0 2 TAF6L chr11:62545600 5'GT 62545600 Upstream 93bp
chr1 180010817 180010817 1 + G T UCEC 180010799 + 180010779 180010819 41 AACCCCTTTTATTTAAAGGTCCATGCAGAATCATTACAGCA AACCCCTTTTATTTAAAGGTCCATGCAGAATCATTACATCA < 41bp 1 0.0161521612582193 1 0.0228069424629211 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEP350 ENSG00000135837 CDS Human protein_coding chr1:180010799 chr1:180010817 nonsynonymous SNV 0.998 0 39 hm5C_associated_SNPs_41829 0 0 1 0 1 CEP350 chr1:180010797 3'AG 180010797 Downstream 21bp
chr8 59483456 59483456 1 + C A UCEC 59483471 + 59483451 59483491 41 AACTGCTTTTTCTGCAAACCCTGCCAATCCAGCAATTTTGT AACTGATTTTTCTGCAAACCCTGCCAATCCAGCAATTTTGT < 41bp 1 0.440973514747204 1 0.0261452794075012 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SDCBP ENSG00000137575 CDS Human protein_coding chr8:59483471 chr8:59483456 nonsynonymous SNV 0.970 1 6 hm5C_associated_SNPs_41830 0 0 1 0 2 SDCBP chr8:59483446 3'AG 59483446 Downstream 11bp
chr8 59483456 59483456 1 + C A UCEC 59483471 + 59483451 59483491 41 AACTGCTTTTTCTGCAAACCCTGCCAATCCAGCAATTTTGT AACTGATTTTTCTGCAAACCCTGCCAATCCAGCAATTTTGT < 41bp 1 0.440973514747204 1 0.0261452794075012 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SDCBP ENSG00000137575 CDS Human protein_coding chr8:59483471 chr8:59483456 nonsynonymous SNV 0.970 1 6 hm5C_associated_SNPs_41830 0 0 1 0 2 SDCBP chr8:59483524 5'GT 59483524 Upstream 69bp
chr17 80684787 80684787 1 + G T UCEC 80684806 + 80684786 80684826 41 AGCAGAGGATTCCTCTGGGCCGGTGATTTTTGACCCAGCTT ATCAGAGGATTCCTCTGGGCCGGTGATTTTTGACCCAGCTT < 41bp 1 0.435469189773549 1 0.421065270900726 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80684806 chr17:80684787 nonsynonymous SNV 0.142 1 2 hm5C_associated_SNPs_41831 0 0 1 0 1 FN3KRP chr17:80684709 3'AG 80684709 Downstream 79bp
chr19 39950208 39950208 1 + T C UCEC 39950216 + 39950196 39950236 41 TAGGGATCCCAATCTGTGGACTGTCAAATGTAAGGTATGTG TAGGGATCCCAACCTGTGGACTGTCAAATGTAAGGTATGTG < 41bp 1 0.0381334908310701 1 0.0712136030197144 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950216 chr19:39950208 synonymous SNV . 0 13 hm5C_associated_SNPs_41832 0 0 1 0 2 SUPT5H chr19:39950199 3'AG 39950199 Downstream 10bp
chr19 39950208 39950208 1 + T C UCEC 39950216 + 39950196 39950236 41 TAGGGATCCCAATCTGTGGACTGTCAAATGTAAGGTATGTG TAGGGATCCCAACCTGTGGACTGTCAAATGTAAGGTATGTG < 41bp 1 0.0381334908310701 1 0.0712136030197144 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950216 chr19:39950208 synonymous SNV . 0 13 hm5C_associated_SNPs_41832 0 0 1 0 2 SUPT5H chr19:39950229 5'GT 39950229 Upstream 22bp
chr19 39950208 39950208 1 + T C UCEC 39950220 + 39950200 39950240 41 GATCCCAATCTGTGGACTGTCAAATGTAAGGTATGTGCTCT GATCCCAACCTGTGGACTGTCAAATGTAAGGTATGTGCTCT < 41bp 1 0.402495056300409 1 0.854240000247955 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950220 chr19:39950208 synonymous SNV . 0 9 hm5C_associated_SNPs_41833 0 0 1 0 2 SUPT5H chr19:39950199 3'AG 39950199 Downstream 10bp
chr19 39950208 39950208 1 + T C UCEC 39950220 + 39950200 39950240 41 GATCCCAATCTGTGGACTGTCAAATGTAAGGTATGTGCTCT GATCCCAACCTGTGGACTGTCAAATGTAAGGTATGTGCTCT < 41bp 1 0.402495056300409 1 0.854240000247955 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950220 chr19:39950208 synonymous SNV . 0 9 hm5C_associated_SNPs_41833 0 0 1 0 2 SUPT5H chr19:39950229 5'GT 39950229 Upstream 22bp
chr11 61725741 61725741 1 + C T UCEC 61725725 + 61725705 61725745 41 GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGCAGTT GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGTAGTT < 41bp 1 0.188948434457832 1 0.21291309595108 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61725725 chr11:61725741 stopgain 0.998 1 37 hm5C_associated_SNPs_41834 0 0 0 2 1 BEST1 chr11:61725770 5'GT 61725770 Upstream 30bp
chr12 53700842 53700842 1 + G A UCEC 53700859 + 53700839 53700879 41 GCGGCTTCACTGGCGGTCACCACACCCGAGAGGGTGCCTTG GCGACTTCACTGGCGGTCACCACACCCGAGAGGGTGCCTTG < 41bp 1 0.54273213586956 1 0.352064818143845 experiment 0.91453572826088 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C12orf10 ENSG00000139637 CDS Human protein_coding chr12:53700859 chr12:53700842 nonsynonymous SNV 0.996 4 4 hm5C_associated_SNPs_41835 0 0 1 0 1 C12orf10 chr12:53700750 3'AG 53700750 Downstream 93bp
chr7 104717815 104717815 1 + C A UCEC 104717824 + 104717804 104717844 41 GATGCACTTATCATTGAATACAGAGGGAAGTTTATGCTGAG GATGCACTTATAATTGAATACAGAGGGAAGTTTATGCTGAG < 41bp 1 0.484216771611237 1 0.77402675151825 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KMT2E ENSG00000005483 CDS Human protein_coding chr7:104717824 chr7:104717815 synonymous SNV . 0 12 hm5C_associated_SNPs_41836 0 0 1 0 1 KMT2E chr7:104717880 5'GT 104717880 Upstream 66bp
chr3 47870579 47870579 1 + C T UCEC 47870592 + 47870572 47870612 41 AGAAGATCGATGCTGAGCGGCAGGCTGCAGCTGCAGCCTGC AGAAGATTGATGCTGAGCGGCAGGCTGCAGCTGCAGCCTGC < 41bp 1 0.476484315960374 1 0.213461637496948 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DHX30 ENSG00000132153 CDS Human protein_coding chr3:47870592 chr3:47870579 synonymous SNV . 0 8 hm5C_associated_SNPs_41837 0 0 1 0 2 DHX30 chr3:47870514 3'AG 47870514 Downstream 66bp
chr3 47870579 47870579 1 + C T UCEC 47870592 + 47870572 47870612 41 AGAAGATCGATGCTGAGCGGCAGGCTGCAGCTGCAGCCTGC AGAAGATTGATGCTGAGCGGCAGGCTGCAGCTGCAGCCTGC < 41bp 1 0.476484315960374 1 0.213461637496948 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DHX30 ENSG00000132153 CDS Human protein_coding chr3:47870592 chr3:47870579 synonymous SNV . 0 8 hm5C_associated_SNPs_41837 0 0 1 0 2 DHX30 chr3:47870624 5'GT 47870624 Upstream 46bp
chr3 47870579 47870579 1 + C T UCEC 47870599 + 47870579 47870619 41 CGATGCTGAGCGGCAGGCTGCAGCTGCAGCCTGCCAGCTGT TGATGCTGAGCGGCAGGCTGCAGCTGCAGCCTGCCAGCTGT < 41bp 1 0.487733350960335 1 0.108718037605286 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DHX30 ENSG00000132153 CDS Human protein_coding chr3:47870599 chr3:47870579 synonymous SNV . 0 1 hm5C_associated_SNPs_41838 0 0 1 0 2 DHX30 chr3:47870514 3'AG 47870514 Downstream 66bp
chr3 47870579 47870579 1 + C T UCEC 47870599 + 47870579 47870619 41 CGATGCTGAGCGGCAGGCTGCAGCTGCAGCCTGCCAGCTGT TGATGCTGAGCGGCAGGCTGCAGCTGCAGCCTGCCAGCTGT < 41bp 1 0.487733350960335 1 0.108718037605286 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DHX30 ENSG00000132153 CDS Human protein_coding chr3:47870599 chr3:47870579 synonymous SNV . 0 1 hm5C_associated_SNPs_41838 0 0 1 0 2 DHX30 chr3:47870624 5'GT 47870624 Upstream 46bp
chr17 37359313 37359313 1 + C T UCEC 37359316 + 37359296 37359336 41 GGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGT GGAGAATGAGGATTTTGTGCCGGCTGCTCAGAAGATACCGT < 41bp 1 0.469189558892455 1 0.316915154457092 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359316 chr17:37359313 nonsynonymous SNV 0.621 1 18 hm5C_associated_SNPs_41839 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 72bp
chr17 37359313 37359313 1 + C T UCEC 37359316 + 37359296 37359336 41 GGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGT GGAGAATGAGGATTTTGTGCCGGCTGCTCAGAAGATACCGT < 41bp 1 0.469189558892455 1 0.316915154457092 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359316 chr17:37359313 nonsynonymous SNV 0.621 1 18 hm5C_associated_SNPs_41839 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 50bp
chr17 37359313 37359313 1 + C T UCEC 37359319 + 37359299 37359339 41 GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAA GAATGAGGATTTTGTGCCGGCTGCTCAGAAGATACCGTGAA < 41bp 1 0.385376728878291 1 0.124901294708252 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359319 chr17:37359313 nonsynonymous SNV 0.621 1 15 hm5C_associated_SNPs_41840 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 72bp
chr17 37359313 37359313 1 + C T UCEC 37359319 + 37359299 37359339 41 GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAA GAATGAGGATTTTGTGCCGGCTGCTCAGAAGATACCGTGAA < 41bp 1 0.385376728878291 1 0.124901294708252 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359319 chr17:37359313 nonsynonymous SNV 0.621 1 15 hm5C_associated_SNPs_41840 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 50bp
chr17 37359313 37359313 1 + C T UCEC 37359322 + 37359302 37359342 41 TGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCT TGAGGATTTTGTGCCGGCTGCTCAGAAGATACCGTGAATCT < 41bp 1 0.446903414343794 1 0.121127992868423 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359322 chr17:37359313 nonsynonymous SNV 0.621 1 12 hm5C_associated_SNPs_41841 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 72bp
chr17 37359313 37359313 1 + C T UCEC 37359322 + 37359302 37359342 41 TGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCT TGAGGATTTTGTGCCGGCTGCTCAGAAGATACCGTGAATCT < 41bp 1 0.446903414343794 1 0.121127992868423 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359322 chr17:37359313 nonsynonymous SNV 0.621 1 12 hm5C_associated_SNPs_41841 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 50bp
chr17 37359313 37359313 1 + C T UCEC 37359333 + 37359313 37359353 41 CGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGA TGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGA < 41bp 1 0.227580193758306 1 0.131600618362427 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359333 chr17:37359313 nonsynonymous SNV 0.621 1 1 hm5C_associated_SNPs_41842 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 72bp
chr17 37359313 37359313 1 + C T UCEC 37359333 + 37359313 37359353 41 CGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGA TGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGA < 41bp 1 0.227580193758306 1 0.131600618362427 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359333 chr17:37359313 nonsynonymous SNV 0.621 1 1 hm5C_associated_SNPs_41842 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 50bp
chr9 90261455 90261455 1 + G T UCEC 90261459 + 90261439 90261479 41 ATTAAAAGAGGCTCGAGAATCGATGTCCAGGATAAGGTCAT ATTAAAAGAGGCTCGATAATCGATGTCCAGGATAAGGTCAT < 41bp 1 0.233690581311523 1 0.498921513557434 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90261459 chr9:90261455 nonsynonymous SNV 0.994 0 17 hm5C_associated_SNPs_41843 0 0 0 0 2 DAPK1 chr9:90261376 3'AG 90261376 Downstream 80bp
chr9 90261455 90261455 1 + G T UCEC 90261459 + 90261439 90261479 41 ATTAAAAGAGGCTCGAGAATCGATGTCCAGGATAAGGTCAT ATTAAAAGAGGCTCGATAATCGATGTCCAGGATAAGGTCAT < 41bp 1 0.233690581311523 1 0.498921513557434 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90261459 chr9:90261455 nonsynonymous SNV 0.994 0 17 hm5C_associated_SNPs_41843 0 0 0 0 2 DAPK1 chr9:90261474 5'GT 90261474 Upstream 20bp
chr2 207027320 207027320 1 + G A UCEC 207027336 + 207027316 207027356 41 AGACGGCTTAGTCTGGGGCTCATGTGAGTTTAGGCTTTGCC AGACAGCTTAGTCTGGGGCTCATGTGAGTTTAGGCTTTGCC < 41bp 1 0.197602132554313 1 0.247000277042389 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EEF1B2 ENSG00000114942 CDS Human protein_coding chr2:207027336 chr2:207027320 nonsynonymous SNV 0.980 2 5 hm5C_associated_SNPs_41844 0 0 1 0 1 EEF1B2 chr2:207027338 5'GT 207027338 Upstream 19bp
chrX 205513 205513 1 + G A UCEC 205500 + 205480 205520 41 AACAAGGCCTTGCCCTGCATCACGCGCCCTGTCGTGCTGAA AACAAGGCCTTGCCCTGCATCACGCGCCCTGTCATGCTGAA < 41bp 1 0.4371811439156 1 0.223816156387329 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:205500 chrX:205513 nonsynonymous SNV 0.013 2 34 hm5C_associated_SNPs_41845 0 0 1 0 1 PLCXD1 chrX:205536 5'GT 205536 Upstream 24bp
chr19 42862334 42862334 1 + G A UCEC 42862330 + 42862310 42862350 41 TCTGCTGTCTACCACGAGGCCACCGACTCCCTCTACGTGTT TCTGCTGTCTACCACGAGGCCACCAACTCCCTCTACGTGTT < 41bp 1 0.363078046930035 1 0.144114255905151 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42862330 chr19:42862334 nonsynonymous SNV 0.948 3 25 hm5C_associated_SNPs_41847 0 0 0 0 1 MEGF8 chr19:42862296 3'AG 42862296 Downstream 39bp
chr19 42862334 42862334 1 + G A UCEC 42862340 + 42862320 42862360 41 ACCACGAGGCCACCGACTCCCTCTACGTGTTTGGGGGGTTC ACCACGAGGCCACCAACTCCCTCTACGTGTTTGGGGGGTTC < 41bp 1 0.33953252743616 1 0.261841416358948 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42862340 chr19:42862334 nonsynonymous SNV 0.948 3 15 hm5C_associated_SNPs_41848 0 0 0 0 1 MEGF8 chr19:42862296 3'AG 42862296 Downstream 39bp
chr8 22064999 22064999 1 + C T UCEC 22065011 + 22064991 22065031 41 CGGTCCAGCGAAAGGGCTTCCAGGCCTCCCACGCCACAGGT CGGTCCAGTGAAAGGGCTTCCAGGCCTCCCACGCCACAGGT < 41bp 1 0.556382538876172 1 0.804307341575623 experiment 0.887234922247657 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22065011 chr8:22064999 stopgain 0.829 0 9 hm5C_associated_SNPs_41849 0 0 0 0 1 BMP1 chr8:22065029 5'GT 22065029 Upstream 31bp
chr19 11152184 11152184 1 + C A UCEC 11152165 + 11152145 11152185 41 CGGCCGCCTGCCGAGAAACTCTCCCCTAACCCACCCAACCT CGGCCGCCTGCCGAGAAACTCTCCCCTAACCCACCCAACAT < 41bp 1 0.393138256583337 1 0.283856064081192 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11152165 chr19:11152184 nonsynonymous SNV 0.995 2 40 hm5C_associated_SNPs_41850 0 0 1 0 1 SMARCA4 chr19:11152236 5'GT 11152236 Upstream 53bp
chr19 11152184 11152184 1 + C A UCEC 11152168 + 11152148 11152188 41 CCGCCTGCCGAGAAACTCTCCCCTAACCCACCCAACCTCAC CCGCCTGCCGAGAAACTCTCCCCTAACCCACCCAACATCAC < 41bp 1 0.14388339667739 1 0.093771904706955 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11152168 chr19:11152184 nonsynonymous SNV 0.995 2 37 hm5C_associated_SNPs_41851 0 0 1 0 1 SMARCA4 chr19:11152236 5'GT 11152236 Upstream 53bp
chr10 122664256 122664256 1 + G A UCEC 122664258 + 122664238 122664278 41 AGTCACTACTGTCACCTCGTCAGGCCCCTCTCAGAGCACCA AGTCACTACTGTCACCTCATCAGGCCCCTCTCAGAGCACCA < 41bp 1 0.388185058963779 1 0.837097764015198 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122664258 chr10:122664256 synonymous SNV . 0 19 hm5C_associated_SNPs_41852 0 0 1 0 2 WDR11 chr10:122664158 3'AG 122664158 Downstream 99bp
chr10 122664256 122664256 1 + G A UCEC 122664258 + 122664238 122664278 41 AGTCACTACTGTCACCTCGTCAGGCCCCTCTCAGAGCACCA AGTCACTACTGTCACCTCATCAGGCCCCTCTCAGAGCACCA < 41bp 1 0.388185058963779 1 0.837097764015198 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122664258 chr10:122664256 synonymous SNV . 0 19 hm5C_associated_SNPs_41852 0 0 1 0 2 WDR11 chr10:122664323 5'GT 122664323 Upstream 68bp
chr7 73922430 73922430 1 + G A UCEC 73922440 + 73922420 73922460 41 CTGGGTAAGCGCTGTGACGTCCCCACCAACGGCTGCGGACC CTGGGTAAGCACTGTGACGTCCCCACCAACGGCTGCGGACC < 41bp 1 0.546911107091352 1 0.198889404535294 experiment 0.906177785817296 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73922440 chr7:73922430 nonsynonymous SNV 0.998 0 11 hm5C_associated_SNPs_41853 0 0 1 0 1 GTF2IRD1 chr7:73922405 3'AG 73922405 Downstream 26bp
chr9 100234752 100234752 1 + A C UCEC 100234769 + 100234749 100234789 41 GTGACAAGTCACTAGAGGTTCACCTGCAGGTACCACTGTGA GTGCCAAGTCACTAGAGGTTCACCTGCAGGTACCACTGTGA < 41bp 1 0.400577213911434 1 0.0459957122802734 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TDRD7 ENSG00000196116 CDS Human protein_coding chr9:100234769 chr9:100234752 nonsynonymous SNV 0.995 4 4 hm5C_associated_SNPs_41854 0 0 0 0 1 TDRD7 chr9:100234777 5'GT 100234777 Upstream 26bp
chr18 19371502 19371502 1 + C T UCEC 19371516 + 19371496 19371536 41 AATGGGCTGAAGCGATGCTTCCAGTAAGTATGTTTAGAATA AATGGGTTGAAGCGATGCTTCCAGTAAGTATGTTTAGAATA < 41bp 1 0.209190564093232 1 0.0596825182437897 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MIB1 ENSG00000101752 CDS Human protein_coding chr18:19371516 chr18:19371502 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_41858 0 0 1 0 1 MIB1 chr18:19371518 5'GT 19371518 Upstream 17bp
chr1 222806495 222806495 1 + G A UCEC 222806499 + 222806479 222806519 41 CTATTGATGCAAACAAGCAACCAGAGACAGCCGCCGAAGAG CTATTGATGCAAACAAACAACCAGAGACAGCCGCCGAAGAG < 41bp 1 0.611251349156872 1 0.324140906333923 experiment 0.777497301686256 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MIA3 ENSG00000154305 CDS Human protein_coding chr1:222806499 chr1:222806495 synonymous SNV . 0 17 hm5C_associated_SNPs_41860 0 0 1 0 2 MIA3 chr1:222806446 3'AG 222806446 Downstream 50bp
chr1 222806495 222806495 1 + G A UCEC 222806499 + 222806479 222806519 41 CTATTGATGCAAACAAGCAACCAGAGACAGCCGCCGAAGAG CTATTGATGCAAACAAACAACCAGAGACAGCCGCCGAAGAG < 41bp 1 0.611251349156872 1 0.324140906333923 experiment 0.777497301686256 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MIA3 ENSG00000154305 CDS Human protein_coding chr1:222806499 chr1:222806495 synonymous SNV . 0 17 hm5C_associated_SNPs_41860 0 0 1 0 2 MIA3 chr1:222806591 5'GT 222806591 Upstream 97bp
chr22 21288070 21288070 1 + T G UCEC 21288090 + 21288070 21288110 41 TCCAAGCCCACCAATGGGATCTGTCTCAGCACCCAACCTGC GCCAAGCCCACCAATGGGATCTGTCTCAGCACCCAACCTGC < 41bp 1 0.111047326395426 1 0.157166332006454 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRKL ENSG00000099942 CDS Human protein_coding chr22:21288090 chr22:21288070 stopgain 0.996 1 1 hm5C_associated_SNPs_41861 0 0 1 0 1 CRKL chr22:21288067 3'AG 21288067 Downstream 4bp
chr6 26091189 26091189 1 + G A UCEC 26091207 + 26091187 26091227 41 TCGCCGTGTGGAGCCCCGAACTCCATGGGTTTCCAGTAGAA TCACCGTGTGGAGCCCCGAACTCCATGGGTTTCCAGTAGAA < 41bp 1 0.793323042530373 1 0.925782442092896 experiment 0.413353914939254 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26091207 chr6:26091189 nonsynonymous SNV 0.955 2 3 hm5C_associated_SNPs_41862 0 0 0 0 1 HFE chr6:26091138 3'AG 26091138 Downstream 52bp
chr9 131010985 131010985 1 + G A UCEC 131010994 + 131010974 131011014 41 TCAACAAGACCGTGAGGGACCTCATGCCCAAGACCATCATG TCAACAAGACCATGAGGGACCTCATGCCCAAGACCATCATG < 41bp 1 0.34335571719787 1 0.0726199746131897 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM1 ENSG00000106976 CDS Human protein_coding chr9:131010994 chr9:131010985 nonsynonymous SNV 0.927 2 12 hm5C_associated_SNPs_41864 0 0 1 0 1 DNM1 chr9:131011032 5'GT 131011032 Upstream 48bp
chr14 21544750 21544750 1 + G A UCEC 21544752 + 21544732 21544772 41 ATCCTCCCCTTGTTCAGCGGCTGCTGATTCTCATTCATGAT ATCCTCCCCTTGTTCAGCAGCTGCTGATTCTCATTCATGAT < 41bp 1 0.176969835430972 1 0.137535125017166 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21544752 chr14:21544750 nonsynonymous SNV 0.703 0 19 hm5C_associated_SNPs_41865 0 0 1 0 3 ARHGEF40 chr14:21544695 3'AG 21544695 Downstream 56bp
chr14 21544750 21544750 1 + G A UCEC 21544752 + 21544732 21544772 41 ATCCTCCCCTTGTTCAGCGGCTGCTGATTCTCATTCATGAT ATCCTCCCCTTGTTCAGCAGCTGCTGATTCTCATTCATGAT < 41bp 1 0.176969835430972 1 0.137535125017166 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21544752 chr14:21544750 nonsynonymous SNV 0.703 0 19 hm5C_associated_SNPs_41865 0 0 1 0 3 ARHGEF40 chr14:21544722 3'AG 21544722 Downstream 29bp
chr14 21544750 21544750 1 + G A UCEC 21544752 + 21544732 21544772 41 ATCCTCCCCTTGTTCAGCGGCTGCTGATTCTCATTCATGAT ATCCTCCCCTTGTTCAGCAGCTGCTGATTCTCATTCATGAT < 41bp 1 0.176969835430972 1 0.137535125017166 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21544752 chr14:21544750 nonsynonymous SNV 0.703 0 19 hm5C_associated_SNPs_41865 0 0 1 0 3 ARHGEF40 chr14:21544802 5'GT 21544802 Upstream 53bp
chr7 6641740 6641740 1 + A C UCEC 6641737 + 6641717 6641757 41 TCTCCTTAATTGCAGATGACCTGAGAACCTTGTGCTCCAGG TCTCCTTAATTGCAGATGACCTGCGAACCTTGTGCTCCAGG < 41bp 1 0.36428716663859 1 0.36930125951767 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6641737 chr7:6641740 synonymous SNV . 0 24 hm5C_associated_SNPs_41867 0 0 0 0 2 C7orf26 chr7:6641732 3'AG 6641732 Downstream 9bp
chr7 6641740 6641740 1 + A C UCEC 6641737 + 6641717 6641757 41 TCTCCTTAATTGCAGATGACCTGAGAACCTTGTGCTCCAGG TCTCCTTAATTGCAGATGACCTGCGAACCTTGTGCTCCAGG < 41bp 1 0.36428716663859 1 0.36930125951767 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6641737 chr7:6641740 synonymous SNV . 0 24 hm5C_associated_SNPs_41867 0 0 0 0 2 C7orf26 chr7:6641771 5'GT 6641771 Upstream 32bp
chr10 5494333 5494333 1 + C T UCEC 5494328 + 5494308 5494348 41 TTTCTTTTTTAAGTCATTTACCCTTCGTGGTGACCACAGAT TTTCTTTTTTAAGTCATTTACCCTTTGTGGTGACCACAGAT < 41bp 1 0.102831737082263 1 0.0805096626281738 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NET1 ENSG00000173848 CDS Human protein_coding chr10:5494328 chr10:5494333 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_41868 0 0 1 0 1 NET1 chr10:5494321 3'AG 5494321 Downstream 13bp
chr11 110333106 110333106 1 + A G UCEC 110333093 + 110333073 110333113 41 TACAGATCACGGTTGGGCTGCCAAATCTGTTTGACAAAATC TACAGATCACGGTTGGGCTGCCAAATCTGTTTGGCAAAATC < 41bp 1 0.203424711963849 1 0.110003530979156 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FDX1 ENSG00000137714 CDS Human protein_coding chr11:110333093 chr11:110333106 nonsynonymous SNV 0.994 2 34 hm5C_associated_SNPs_41869 0 0 1 0 1 FDX1 chr11:110333078 3'AG 110333078 Downstream 29bp
chr11 110333106 110333106 1 + A G UCEC 110333094 + 110333074 110333114 41 ACAGATCACGGTTGGGCTGCCAAATCTGTTTGACAAAATCT ACAGATCACGGTTGGGCTGCCAAATCTGTTTGGCAAAATCT < 41bp 1 0.23071738285586 1 0.476891338825226 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FDX1 ENSG00000137714 CDS Human protein_coding chr11:110333094 chr11:110333106 nonsynonymous SNV 0.994 2 33 hm5C_associated_SNPs_41870 0 0 1 0 1 FDX1 chr11:110333078 3'AG 110333078 Downstream 29bp
chr17 77755508 77755508 1 + G T UCEC 77755519 + 77755499 77755539 41 CATGAGAAGGAGGTGCAGAACCGGAAGAGAGGCAAGAGGCC CATGAGAAGTAGGTGCAGAACCGGAAGAGAGGCAAGAGGCC < 41bp 1 0.692417629690328 1 0.557493805885315 experiment 0.615164740619345 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755519 chr17:77755508 stopgain 1.000 1 10 hm5C_associated_SNPs_41872 0 0 1 0 2 CBX2 chr17:77755495 3'AG 77755495 Downstream 14bp
chr17 77755508 77755508 1 + G T UCEC 77755519 + 77755499 77755539 41 CATGAGAAGGAGGTGCAGAACCGGAAGAGAGGCAAGAGGCC CATGAGAAGTAGGTGCAGAACCGGAAGAGAGGCAAGAGGCC < 41bp 1 0.692417629690328 1 0.557493805885315 experiment 0.615164740619345 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755519 chr17:77755508 stopgain 1.000 1 10 hm5C_associated_SNPs_41872 0 0 1 0 2 CBX2 chr17:77755600 5'GT 77755600 Upstream 93bp
chrX 41198294 41198294 1 + C T UCEC 41198304 + 41198284 41198324 41 TTTAGAAGGGCGCTATATTCCTCCTCATTTAAGGAACCGAG TTTAGAAGGGTGCTATATTCCTCCTCATTTAAGGAACCGAG < 41bp 1 0.34119354639218 1 0.384774208068848 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41198304 chrX:41198294 nonsynonymous SNV 0.997 3 11 hm5C_associated_SNPs_41873 0 0 1 0 2 DDX3X chrX:41198289 3'AG 41198289 Downstream 6bp
chrX 41198294 41198294 1 + C T UCEC 41198304 + 41198284 41198324 41 TTTAGAAGGGCGCTATATTCCTCCTCATTTAAGGAACCGAG TTTAGAAGGGTGCTATATTCCTCCTCATTTAAGGAACCGAG < 41bp 1 0.34119354639218 1 0.384774208068848 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41198304 chrX:41198294 nonsynonymous SNV 0.997 3 11 hm5C_associated_SNPs_41873 0 0 1 0 2 DDX3X chrX:41198336 5'GT 41198336 Upstream 43bp
chr4 48384654 48384654 1 + G A UCEC 48384660 + 48384640 48384680 41 CAATTCTACAAGACGGGGTACTTTTAGTGATCAGGAACTTG CAATTCTACAAGACAGGGTACTTTTAGTGATCAGGAACTTG < 41bp 1 0.0230725395764447 1 0.0111980736255646 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLAIN2 ENSG00000109171 CDS Human protein_coding chr4:48384660 chr4:48384654 nonsynonymous SNV 0.999 4 15 hm5C_associated_SNPs_41875 0 0 1 0 1 SLAIN2 chr4:48384585 3'AG 48384585 Downstream 70bp
chr5 72798848 72798848 1 + G T UCEC 72798844 + 72798824 72798864 41 CATTACAGGCCATGCTGAGACAAAGCAGCTGACAGAAATGC CATTACAGGCCATGCTGAGACAAATCAGCTGACAGAAATGC < 41bp 1 0.427867288901207 1 0.288900196552277 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTF3 ENSG00000145741 CDS Human protein_coding chr5:72798844 chr5:72798848 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_41876 0 0 1 0 1 BTF3 chr5:72798942 5'GT 72798942 Upstream 95bp
chr12 105558483 105558483 1 + C T UCEC 105558486 + 105558466 105558506 41 CAGAGCAGACAAGACTGCGGCTGAAGAAAACCAAGAAAAGA CAGAGCAGACAAGACTGTGGCTGAAGAAAACCAAGAAAAGA < 41bp 1 0.568465043377463 1 0.419167011976242 experiment 0.863069913245074 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105558486 chr12:105558483 nonsynonymous SNV 0.994 3 18 hm5C_associated_SNPs_41877 0 0 0 0 2 WASHC4 chr12:105558419 3'AG 105558419 Downstream 65bp
chr12 105558483 105558483 1 + C T UCEC 105558486 + 105558466 105558506 41 CAGAGCAGACAAGACTGCGGCTGAAGAAAACCAAGAAAAGA CAGAGCAGACAAGACTGTGGCTGAAGAAAACCAAGAAAAGA < 41bp 1 0.568465043377463 1 0.419167011976242 experiment 0.863069913245074 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105558486 chr12:105558483 nonsynonymous SNV 0.994 3 18 hm5C_associated_SNPs_41877 0 0 0 0 2 WASHC4 chr12:105558518 5'GT 105558518 Upstream 36bp
chr15 91456113 91456113 1 + G A UCEC 91456118 + 91456098 91456138 41 TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCCCGTGCTGCG TTTCTCTAGCCCTACATCCCCAAGGAGCCCCCCGTGCTGCG < 41bp 1 0.636344269979595 1 0.89609694480896 experiment 0.727311460040809 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91456118 chr15:91456113 nonsynonymous SNV 0.447 0 16 hm5C_associated_SNPs_41882 0 0 1 0 1 MAN2A2 chr15:91456107 3'AG 91456107 Downstream 7bp
chr7 70252211 70252211 1 + C T UCEC 70252228 + 70252208 70252248 41 GTTCGGCCACAAGGATGGCCCCAGTGTGCAGAACTTTAGCA GTTTGGCCACAAGGATGGCCCCAGTGTGCAGAACTTTAGCA < 41bp 1 0.145109458039715 1 0.0629980266094208 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:70252228 chr7:70252211 synonymous SNV . 0 4 hm5C_associated_SNPs_41883 0 0 1 0 1 AUTS2 chr7:70252195 3'AG 70252195 Downstream 17bp
chr14 102466691 102466691 1 + C T UCEC 102466707 + 102466687 102466727 41 AAATCGATCAGATGAAGGAGCAACCCTGGGTTTCAGTACAG AAATTGATCAGATGAAGGAGCAACCCTGGGTTTCAGTACAG < 41bp 1 0.0418911451348553 1 0.197573095560074 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466707 chr14:102466691 synonymous SNV . 0 5 hm5C_associated_SNPs_41885 0 0 1 0 2 DYNC1H1 chr14:102466623 3'AG 102466623 Downstream 69bp
chr14 102466691 102466691 1 + C T UCEC 102466707 + 102466687 102466727 41 AAATCGATCAGATGAAGGAGCAACCCTGGGTTTCAGTACAG AAATTGATCAGATGAAGGAGCAACCCTGGGTTTCAGTACAG < 41bp 1 0.0418911451348553 1 0.197573095560074 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466707 chr14:102466691 synonymous SNV . 0 5 hm5C_associated_SNPs_41885 0 0 1 0 2 DYNC1H1 chr14:102466736 5'GT 102466736 Upstream 46bp
chr2 54871555 54871555 1 + C A UCEC 54871546 + 54871526 54871566 41 TTACATAAAATGTGGGAAGTCCTTGAATCCACTACCCAGAC TTACATAAAATGTGGGAAGTCCTTGAATCAACTACCCAGAC < 41bp 1 0.0402154660983994 1 0.0925605893135071 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54871546 chr2:54871555 synonymous SNV . 0 30 hm5C_associated_SNPs_41886 0 0 1 0 1 SPTBN1 chr2:54871460 3'AG 54871460 Downstream 96bp
chr16 28843545 28843545 1 + G A UCEC 28843531 + 28843511 28843551 41 CCCCTTTTCTTCCAGTGGGCCGGATGTATCCCCCGCGTTCT CCCCTTTTCTTCCAGTGGGCCGGATGTATCCCCCACGTTCT < 41bp 1 0.327829988005079 1 0.447473585605621 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28843531 chr16:28843545 synonymous SNV . 0 35 hm5C_associated_SNPs_41888 0 0 1 0 2 ATXN2L chr16:28843508 3'AG 28843508 Downstream 38bp
chr16 28843545 28843545 1 + G A UCEC 28843531 + 28843511 28843551 41 CCCCTTTTCTTCCAGTGGGCCGGATGTATCCCCCGCGTTCT CCCCTTTTCTTCCAGTGGGCCGGATGTATCCCCCACGTTCT < 41bp 1 0.327829988005079 1 0.447473585605621 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28843531 chr16:28843545 synonymous SNV . 0 35 hm5C_associated_SNPs_41888 0 0 1 0 2 ATXN2L chr16:28843526 3'AG 28843526 Downstream 20bp
chr3 157841677 157841677 1 + A C UCEC 157841658 + 157841638 157841678 41 ATTATATTTTATTTCAGACGCAGGCATCGATCAAGCAGTAG ATTATATTTTATTTCAGACGCAGGCATCGATCAAGCAGTCG < 41bp 1 0.33874370153041 1 0.116480052471161 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157841658 chr3:157841677 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_41889 0 0 1 0 1 RSRC1 chr3:157841655 3'AG 157841655 Downstream 23bp
chr3 157841677 157841677 1 + A C UCEC 157841665 + 157841645 157841685 41 TTTATTTCAGACGCAGGCATCGATCAAGCAGTAGCTCTTCT TTTATTTCAGACGCAGGCATCGATCAAGCAGTCGCTCTTCT < 41bp 1 0.11826560267626 1 0.14891904592514 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157841665 chr3:157841677 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_41890 0 0 1 0 1 RSRC1 chr3:157841655 3'AG 157841655 Downstream 23bp
chr14 100367285 100367285 1 + G A UCEC 100367289 + 100367269 100367309 41 TTGCCCCCACATGTGCGCATCTGGGATTCTGTGACATTGAA TTGCCCCCACATGTGCACATCTGGGATTCTGTGACATTGAA < 41bp 1 0.54157262930177 1 0.16809007525444 experiment 0.916854741396461 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EML1 ENSG00000066629 CDS Human protein_coding chr14:100367289 chr14:100367285 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_41891 0 0 0 0 2 EML1 chr14:100367266 3'AG 100367266 Downstream 20bp
chr14 100367285 100367285 1 + G A UCEC 100367289 + 100367269 100367309 41 TTGCCCCCACATGTGCGCATCTGGGATTCTGTGACATTGAA TTGCCCCCACATGTGCACATCTGGGATTCTGTGACATTGAA < 41bp 1 0.54157262930177 1 0.16809007525444 experiment 0.916854741396461 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EML1 ENSG00000066629 CDS Human protein_coding chr14:100367289 chr14:100367285 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_41891 0 0 0 0 2 EML1 chr14:100367376 5'GT 100367376 Upstream 92bp
chr4 144460050 144460050 1 + T C UCEC 144460033 + 144460013 144460053 41 TGGCATCAATCTTGCGACTGCTGATGTAGTAATTTTGTATG TGGCATCAATCTTGCGACTGCTGATGTAGTAATTTTGCATG < 41bp 1 0.318138945913889 1 0.264405131340027 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA5 ENSG00000153147 CDS Human protein_coding chr4:144460033 chr4:144460050 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_41895 0 0 1 0 1 SMARCA5 chr4:144460091 5'GT 144460091 Upstream 42bp
chr2 64118268 64118268 1 + C A UCEC 64118258 + 64118238 64118278 41 TTTCCCTGTCACTTAGGGAACGGTTATCATCATTGCAAATC TTTCCCTGTCACTTAGGGAACGGTTATCATAATTGCAAATC < 41bp 1 0.339405532533664 1 0.0689093768596649 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UGP2 ENSG00000169764 CDS Human protein_coding chr2:64118258 chr2:64118268 synonymous SNV . 0 31 hm5C_associated_SNPs_41896 0 0 0 0 1 UGP2 chr2:64118254 3'AG 64118254 Downstream 15bp
chr14 21462706 21462706 1 + T C UCEC 21462722 + 21462702 21462742 41 GTGGTTCAGAATCTGGGGAGCCTTATATTCCAGGTGTCTTT GTGGCTCAGAATCTGGGGAGCCTTATATTCCAGGTGTCTTT < 41bp 1 0.0833533525681871 1 0.0114620923995972 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL17 ENSG00000165792 CDS Human protein_coding chr14:21462722 chr14:21462706 synonymous SNV . 0 5 hm5C_associated_SNPs_41897 0 0 1 0 1 METTL17 chr14:21462702 3'AG 21462702 Downstream 5bp
chr17 38142915 38142915 1 + C A UCEC 38142926 + 38142906 38142946 41 GAAGCCTATCTCCAACTCCTCGTGGTCATCTTCATGATGAA GAAGCCTATATCCAACTCCTCGTGGTCATCTTCATGATGAA < 41bp 1 0.344064504087138 1 0.175295025110245 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38142926 chr17:38142915 nonsynonymous SNV 0.900 2 10 hm5C_associated_SNPs_41898 0 0 1 0 2 PSMD3 chr17:38142828 3'AG 38142828 Downstream 88bp
chr17 38142915 38142915 1 + C A UCEC 38142926 + 38142906 38142946 41 GAAGCCTATCTCCAACTCCTCGTGGTCATCTTCATGATGAA GAAGCCTATATCCAACTCCTCGTGGTCATCTTCATGATGAA < 41bp 1 0.344064504087138 1 0.175295025110245 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38142926 chr17:38142915 nonsynonymous SNV 0.900 2 10 hm5C_associated_SNPs_41898 0 0 1 0 2 PSMD3 chr17:38142965 5'GT 38142965 Upstream 51bp
chr14 55609354 55609354 1 + C T UCEC 55609359 + 55609339 55609379 41 TTCCACTTTAACCCACGCTTCAATGAGAACAACAGGAGAGT TTCCACTTTAACCCATGCTTCAATGAGAACAACAGGAGAGT < 41bp 1 0.151863109949508 1 0.0705975592136383 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LGALS3 ENSG00000131981 CDS Human protein_coding chr14:55609359 chr14:55609354 nonsynonymous SNV 0.999 4 16 hm5C_associated_SNPs_41900 0 0 0 0 1 LGALS3 chr14:55609302 3'AG 55609302 Downstream 53bp
chr19 41120229 41120229 1 + G A UCEC 41120209 + 41120189 41120229 41 CCCACATCCGACCACCCGACCTCTCTCCTCAGACGTGGACG CCCACATCCGACCACCCGACCTCTCTCCTCAGACGTGGACA < 41bp 1 0.0264208167127126 1 0.0144018530845642 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41120209 chr19:41120229 nonsynonymous SNV 0.997 4 41 hm5C_associated_SNPs_41905 0 0 1 0 1 LTBP4 chr19:41120221 3'AG 41120221 Downstream 9bp
chr12 101680180 101680180 1 + C T UCEC 101680176 + 101680156 101680196 41 GTTTTTTTTGACTATCACCTCGATCCTGGAGACTCAGGACA GTTTTTTTTGACTATCACCTCGATTCTGGAGACTCAGGACA < 41bp 1 0.121966178517278 1 0.0629355907440186 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101680176 chr12:101680180 synonymous SNV . 0 25 hm5C_associated_SNPs_41906 0 0 1 0 1 UTP20 chr12:101680099 3'AG 101680099 Downstream 82bp
chr5 72798827 72798827 1 + T C UCEC 72798844 + 72798824 72798864 41 CATTACAGGCCATGCTGAGACAAAGCAGCTGACAGAAATGC CATCACAGGCCATGCTGAGACAAAGCAGCTGACAGAAATGC < 41bp 1 0.605191179047287 1 0.348757266998291 experiment 0.789617641905426 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTF3 ENSG00000145741 CDS Human protein_coding chr5:72798844 chr5:72798827 synonymous SNV . 0 4 hm5C_associated_SNPs_41907 0 0 1 0 1 BTF3 chr5:72798741 3'AG 72798741 Downstream 87bp
chr1 182827323 182827323 1 + T C UCEC 182827338 + 182827318 182827358 41 CCATCTTGGAGTGGTTGAAGCTTACTCCGGACTTACAAAGA CCATCCTGGAGTGGTTGAAGCTTACTCCGGACTTACAAAGA < 41bp 1 0.199106612494248 1 0.135673761367798 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182827338 chr1:182827323 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_41908 0 0 1 0 2 DHX9 chr1:182827239 3'AG 182827239 Downstream 85bp
chr1 182827323 182827323 1 + T C UCEC 182827338 + 182827318 182827358 41 CCATCTTGGAGTGGTTGAAGCTTACTCCGGACTTACAAAGA CCATCCTGGAGTGGTTGAAGCTTACTCCGGACTTACAAAGA < 41bp 1 0.199106612494248 1 0.135673761367798 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182827338 chr1:182827323 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_41908 0 0 1 0 2 DHX9 chr1:182827375 5'GT 182827375 Upstream 53bp
chr1 182827323 182827323 1 + T C UCEC 182827342 + 182827322 182827362 41 CTTGGAGTGGTTGAAGCTTACTCCGGACTTACAAAGAAGAA CCTGGAGTGGTTGAAGCTTACTCCGGACTTACAAAGAAGAA < 41bp 1 0.766319920775585 1 0.381755769252777 experiment 0.467360158448829 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182827342 chr1:182827323 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_41909 0 0 1 0 2 DHX9 chr1:182827239 3'AG 182827239 Downstream 85bp
chr1 182827323 182827323 1 + T C UCEC 182827342 + 182827322 182827362 41 CTTGGAGTGGTTGAAGCTTACTCCGGACTTACAAAGAAGAA CCTGGAGTGGTTGAAGCTTACTCCGGACTTACAAAGAAGAA < 41bp 1 0.766319920775585 1 0.381755769252777 experiment 0.467360158448829 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182827342 chr1:182827323 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_41909 0 0 1 0 2 DHX9 chr1:182827375 5'GT 182827375 Upstream 53bp
chr1 109325272 109325272 1 + G A UCEC 109325284 + 109325264 109325304 41 TTGACAGGGAAATTCCCAAGCTTATGAAAGAAATTTCATCA TTGACAGGAAAATTCCCAAGCTTATGAAAGAAATTTCATCA < 41bp 1 0.157304414754699 1 0.0607879459857941 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109325284 chr1:109325272 nonsynonymous SNV 0.999 1 9 hm5C_associated_SNPs_41910 0 0 1 0 2 STXBP3 chr1:109325271 3'AG 109325271 Downstream 2bp
chr1 109325272 109325272 1 + G A UCEC 109325284 + 109325264 109325304 41 TTGACAGGGAAATTCCCAAGCTTATGAAAGAAATTTCATCA TTGACAGGAAAATTCCCAAGCTTATGAAAGAAATTTCATCA < 41bp 1 0.157304414754699 1 0.0607879459857941 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109325284 chr1:109325272 nonsynonymous SNV 0.999 1 9 hm5C_associated_SNPs_41910 0 0 1 0 2 STXBP3 chr1:109325328 5'GT 109325328 Upstream 57bp
chr8 17819583 17819583 1 + A G UCEC 17819570 + 17819550 17819590 41 CTGCTAGTGTGGGTAACTGTCCCACCAAAAAATATATGCCA CTGCTAGTGTGGGTAACTGTCCCACCAAAAAATGTATGCCA < 41bp 1 0.178223168228957 1 0.353214472532272 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PCM1 ENSG00000078674 CDS Human protein_coding chr8:17819570 chr8:17819583 nonsynonymous SNV 0.984 1 34 hm5C_associated_SNPs_41911 0 0 1 0 1 PCM1 chr8:17819543 3'AG 17819543 Downstream 41bp
chr8 17819583 17819583 1 + A G UCEC 17819571 + 17819551 17819591 41 TGCTAGTGTGGGTAACTGTCCCACCAAAAAATATATGCCAG TGCTAGTGTGGGTAACTGTCCCACCAAAAAATGTATGCCAG < 41bp 1 0.145836119138972 1 0.461863994598389 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCM1 ENSG00000078674 CDS Human protein_coding chr8:17819571 chr8:17819583 nonsynonymous SNV 0.984 1 33 hm5C_associated_SNPs_41912 0 0 1 0 1 PCM1 chr8:17819543 3'AG 17819543 Downstream 41bp
chr19 38780811 38780811 1 + C A UCEC 38780801 + 38780781 38780821 41 CACTGGGCCTTGCCGTGCATCCTTCCCACGCTGGTACTTTG CACTGGGCCTTGCCGTGCATCCTTCCCACGATGGTACTTTG < 41bp 1 0.0150268132953442 1 0.074692964553833 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPINT2 ENSG00000167642;ENSG00000267748 CDS Human other chr19:38780801 chr19:38780811 nonsynonymous SNV . 0 31 hm5C_associated_SNPs_41913 0 0 1 0 1 SPINT2 chr19:38780759 3'AG 38780759 Downstream 53bp
chrX 48385619 48385619 1 + G A UCEC 48385618 + 48385598 48385638 41 CTCAGCCTGTGGGTGGTGATCGCCTTTCTCCGCCAGCATCC CTCAGCCTGTGGGTGGTGATCACCTTTCTCCGCCAGCATCC < 41bp 1 0.771203103761484 1 0.0934190154075623 experiment 0.457593792477032 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EBP ENSG00000147155 CDS Human protein_coding chrX:48385618 chrX:48385619 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_41914 0 0 1 0 2 EBP chrX:48385543 3'AG 48385543 Downstream 77bp
chrX 48385619 48385619 1 + G A UCEC 48385618 + 48385598 48385638 41 CTCAGCCTGTGGGTGGTGATCGCCTTTCTCCGCCAGCATCC CTCAGCCTGTGGGTGGTGATCACCTTTCTCCGCCAGCATCC < 41bp 1 0.771203103761484 1 0.0934190154075623 experiment 0.457593792477032 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EBP ENSG00000147155 CDS Human protein_coding chrX:48385618 chrX:48385619 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_41914 0 0 1 0 2 EBP chrX:48385673 5'GT 48385673 Upstream 55bp
chr6 7578032 7578032 1 + C T UCEC 7578027 + 7578007 7578047 41 TGCAGGATTATGAGCTCCAGCTGGCCTCATACACCTCAGGA TGCAGGATTATGAGCTCCAGCTGGCTTCATACACCTCAGGA < 41bp 1 0.319824390646166 1 0.388523876667023 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DSP ENSG00000096696 CDS Human protein_coding chr6:7578027 chr6:7578032 synonymous SNV . 0 26 hm5C_associated_SNPs_41915 0 0 1 0 2 DSP chr6:7578012 3'AG 7578012 Downstream 21bp
chr6 7578032 7578032 1 + C T UCEC 7578027 + 7578007 7578047 41 TGCAGGATTATGAGCTCCAGCTGGCCTCATACACCTCAGGA TGCAGGATTATGAGCTCCAGCTGGCTTCATACACCTCAGGA < 41bp 1 0.319824390646166 1 0.388523876667023 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DSP ENSG00000096696 CDS Human protein_coding chr6:7578027 chr6:7578032 synonymous SNV . 0 26 hm5C_associated_SNPs_41915 0 0 1 0 2 DSP chr6:7578119 5'GT 7578119 Upstream 88bp
chr20 25198161 25198161 1 + C T UCEC 25198155 + 25198135 25198175 41 CAGGGCACCCTGCAGGCCTCCCCACCCGGCTACCTGACGGC CAGGGCACCCTGCAGGCCTCCCCACCTGGCTACCTGACGGC < 41bp 1 0.148779185794553 1 0.0681360363960266 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25198155 chr20:25198161 synonymous SNV . 0 27 hm5C_associated_SNPs_41916 0 0 1 0 2 ENTPD6 chr20:25198138 3'AG 25198138 Downstream 24bp
chr20 25198161 25198161 1 + C T UCEC 25198155 + 25198135 25198175 41 CAGGGCACCCTGCAGGCCTCCCCACCCGGCTACCTGACGGC CAGGGCACCCTGCAGGCCTCCCCACCTGGCTACCTGACGGC < 41bp 1 0.148779185794553 1 0.0681360363960266 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25198155 chr20:25198161 synonymous SNV . 0 27 hm5C_associated_SNPs_41916 0 0 1 0 2 ENTPD6 chr20:25198217 5'GT 25198217 Upstream 57bp
chr4 7026929 7026929 1 + G T UCEC 7026933 + 7026913 7026953 41 AGGACCTGCCCGCCGAGGAGCTGTTTGCCTCCATCGCCACG AGGACCTGCCCGCCGATGAGCTGTTTGCCTCCATCGCCACG < 41bp 1 0.272763806933218 1 0.0397909879684448 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBC1D14 ENSG00000132405 CDS Human protein_coding chr4:7026933 chr4:7026929 nonsynonymous SNV 0.689 0 17 hm5C_associated_SNPs_41917 0 0 1 0 1 TBC1D14 chr4:7026989 5'GT 7026989 Upstream 61bp
chr1 22307572 22307572 1 + G A UCEC 22307561 + 22307541 22307581 41 ACCTACCAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAA ACCTACCAGGTGGTGTTGGGCGAGTACGACCATGCTGTGAA < 41bp 1 0.628721351373288 1 0.456040024757385 experiment 0.742557297253424 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307561 chr1:22307572 nonsynonymous SNV 0.001 1 32 hm5C_associated_SNPs_41918 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 42bp
chr1 22307572 22307572 1 + G A UCEC 22307561 + 22307541 22307581 41 ACCTACCAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAA ACCTACCAGGTGGTGTTGGGCGAGTACGACCATGCTGTGAA < 41bp 1 0.628721351373288 1 0.456040024757385 experiment 0.742557297253424 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307561 chr1:22307572 nonsynonymous SNV 0.001 1 32 hm5C_associated_SNPs_41918 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 94bp
chr1 22307572 22307572 1 + G A UCEC 22307567 + 22307547 22307587 41 CAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGG CAGGTGGTGTTGGGCGAGTACGACCATGCTGTGAAGGAGGG < 41bp 1 0.342910687518657 1 0.486939609050751 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307567 chr1:22307572 nonsynonymous SNV 0.001 1 26 hm5C_associated_SNPs_41919 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 42bp
chr1 22307572 22307572 1 + G A UCEC 22307567 + 22307547 22307587 41 CAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGG CAGGTGGTGTTGGGCGAGTACGACCATGCTGTGAAGGAGGG < 41bp 1 0.342910687518657 1 0.486939609050751 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307567 chr1:22307572 nonsynonymous SNV 0.001 1 26 hm5C_associated_SNPs_41919 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 94bp
chr1 22307572 22307572 1 + G A UCEC 22307570 + 22307550 22307590 41 GTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCC GTGGTGTTGGGCGAGTACGACCATGCTGTGAAGGAGGGCCC < 41bp 1 0.187390940258825 1 0.585090577602386 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307570 chr1:22307572 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_41920 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 42bp
chr1 22307572 22307572 1 + G A UCEC 22307570 + 22307550 22307590 41 GTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCC GTGGTGTTGGGCGAGTACGACCATGCTGTGAAGGAGGGCCC < 41bp 1 0.187390940258825 1 0.585090577602386 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307570 chr1:22307572 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_41920 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 94bp
chr1 22307572 22307572 1 + G A UCEC 22307575 + 22307555 22307595 41 GTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCCCGAGC GTTGGGCGAGTACGACCATGCTGTGAAGGAGGGCCCCGAGC < 41bp 1 0.661808202683946 1 0.175130695104599 experiment 0.676383594632109 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307575 chr1:22307572 nonsynonymous SNV 0.001 1 18 hm5C_associated_SNPs_41921 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 42bp
chr1 22307572 22307572 1 + G A UCEC 22307575 + 22307555 22307595 41 GTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCCCGAGC GTTGGGCGAGTACGACCATGCTGTGAAGGAGGGCCCCGAGC < 41bp 1 0.661808202683946 1 0.175130695104599 experiment 0.676383594632109 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307575 chr1:22307572 nonsynonymous SNV 0.001 1 18 hm5C_associated_SNPs_41921 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 94bp
chr1 22307572 22307572 1 + G A UCEC 22307588 + 22307568 22307608 41 GACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT GACCATGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT < 41bp 1 0.23422089755653 1 0.127512246370316 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307588 chr1:22307572 nonsynonymous SNV 0.001 1 5 hm5C_associated_SNPs_41922 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 42bp
chr1 22307572 22307572 1 + G A UCEC 22307588 + 22307568 22307608 41 GACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT GACCATGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT < 41bp 1 0.23422089755653 1 0.127512246370316 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307588 chr1:22307572 nonsynonymous SNV 0.001 1 5 hm5C_associated_SNPs_41922 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 94bp
chr1 22307572 22307572 1 + G A UCEC 22307589 + 22307569 22307609 41 ACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC ACCATGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC < 41bp 1 0.571890841695976 1 0.414706349372864 experiment 0.856218316608048 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307589 chr1:22307572 nonsynonymous SNV 0.001 1 4 hm5C_associated_SNPs_41923 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 42bp
chr1 22307572 22307572 1 + G A UCEC 22307589 + 22307569 22307609 41 ACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC ACCATGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC < 41bp 1 0.571890841695976 1 0.414706349372864 experiment 0.856218316608048 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307589 chr1:22307572 nonsynonymous SNV 0.001 1 4 hm5C_associated_SNPs_41923 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 94bp
chr1 22307572 22307572 1 + G A UCEC 22307590 + 22307570 22307610 41 CCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA CCATGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA < 41bp 1 0.410436046554783 1 0.268902540206909 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307590 chr1:22307572 nonsynonymous SNV 0.001 1 3 hm5C_associated_SNPs_41924 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 42bp
chr1 22307572 22307572 1 + G A UCEC 22307590 + 22307570 22307610 41 CCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA CCATGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA < 41bp 1 0.410436046554783 1 0.268902540206909 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307590 chr1:22307572 nonsynonymous SNV 0.001 1 3 hm5C_associated_SNPs_41924 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 94bp
chr1 22307572 22307572 1 + G A UCEC 22307591 + 22307571 22307611 41 CGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA CATGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA < 41bp 1 0.572392676431815 1 0.261330246925354 experiment 0.85521464713637 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307591 chr1:22307572 nonsynonymous SNV 0.001 1 2 hm5C_associated_SNPs_41925 0 0 0 0 2 CELA3B chr1:22307531 3'AG 22307531 Downstream 42bp
chr1 22307572 22307572 1 + G A UCEC 22307591 + 22307571 22307611 41 CGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA CATGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA < 41bp 1 0.572392676431815 1 0.261330246925354 experiment 0.85521464713637 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307591 chr1:22307572 nonsynonymous SNV 0.001 1 2 hm5C_associated_SNPs_41925 0 0 0 0 2 CELA3B chr1:22307665 5'GT 22307665 Upstream 94bp
chr17 45757963 45757963 1 + C T UCEC 45757956 + 45757936 45757976 41 ATGAATTGTTAACTGAAGGGCGGAGATCGAAGACTAACAAA ATGAATTGTTAACTGAAGGGCGGAGATTGAAGACTAACAAA < 41bp 1 0.386324759344497 1 0.219311773777008 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45757956 chr17:45757963 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_41927 0 0 1 0 2 KPNB1 chr17:45757874 3'AG 45757874 Downstream 90bp
chr17 45757963 45757963 1 + C T UCEC 45757956 + 45757936 45757976 41 ATGAATTGTTAACTGAAGGGCGGAGATCGAAGACTAACAAA ATGAATTGTTAACTGAAGGGCGGAGATTGAAGACTAACAAA < 41bp 1 0.386324759344497 1 0.219311773777008 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45757956 chr17:45757963 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_41927 0 0 1 0 2 KPNB1 chr17:45758035 5'GT 45758035 Upstream 73bp
chr1 171763642 171763642 1 + G T UCEC 171763629 + 171763609 171763649 41 CCCAGCATTTGTGGAGCAATCTTTTCTACAGAAGGTTAAAA CCCAGCATTTGTGGAGCAATCTTTTCTACAGAATGTTAAAA < 41bp 1 0.15970573303175 1 0.0624492764472961 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171763629 chr1:171763642 nonsynonymous SNV 0.982 0 34 hm5C_associated_SNPs_41928 0 0 1 0 1 METTL13 chr1:171763667 5'GT 171763667 Upstream 26bp
chr10 80968149 80968149 1 + C T UCEC 80968135 + 80968115 80968155 41 TCCACAATGCCGCCACGGAGCTGCTGGACTGGTGCGGAGAC TCCACAATGCCGCCACGGAGCTGCTGGACTGGTGTGGAGAC < 41bp 1 0.324311585000194 1 0.106821060180664 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ1 ENSG00000108175 CDS Human protein_coding chr10:80968135 chr10:80968149 synonymous SNV . 0 35 hm5C_associated_SNPs_41929 0 0 1 0 2 ZMIZ1 chr10:80968093 3'AG 80968093 Downstream 57bp
chr10 80968149 80968149 1 + C T UCEC 80968135 + 80968115 80968155 41 TCCACAATGCCGCCACGGAGCTGCTGGACTGGTGCGGAGAC TCCACAATGCCGCCACGGAGCTGCTGGACTGGTGTGGAGAC < 41bp 1 0.324311585000194 1 0.106821060180664 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ1 ENSG00000108175 CDS Human protein_coding chr10:80968135 chr10:80968149 synonymous SNV . 0 35 hm5C_associated_SNPs_41929 0 0 1 0 2 ZMIZ1 chr10:80968206 5'GT 80968206 Upstream 58bp
chr10 292866 292866 1 + G T UCEC 292849 + 292829 292869 41 AGAAGGGAGATTTTGGAAATCTAAGAATGAGGACCGAGGTG AGAAGGGAGATTTTGGAAATCTAAGAATGAGGACCGATGTG < 41bp 1 0.733966249945311 1 0.103487551212311 experiment 0.532067500109379 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZMYND11 ENSG00000015171 CDS Human protein_coding chr10:292849 chr10:292866 nonsynonymous SNV 0.999 3 38 hm5C_associated_SNPs_41930 0 0 1 0 1 ZMYND11 chr10:292913 5'GT 292913 Upstream 48bp
chr14 103805646 103805646 1 + G T UCEC 103805638 + 103805618 103805658 41 TTAATGAGAAGATTAGAGAACAGATTAAGAAATACAGGCGC TTAATGAGAAGATTAGAGAACAGATTAATAAATACAGGCGC < 41bp 1 0.387974776246537 1 0.144428133964539 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103805638 chr14:103805646 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_41931 0 0 1 0 1 EIF5 chr14:103805670 5'GT 103805670 Upstream 25bp
chr15 22958328 22958328 1 + G T UCEC 22958333 + 22958313 22958353 41 CCTGGAGACCAAGGAGGCATCGATGATGGAGTGCGTGTCCT CCTGGAGACCAAGGATGCATCGATGATGGAGTGCGTGTCCT < 41bp 1 0.521632140131633 1 0.314628839492798 experiment 0.956735719736733 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22958333 chr15:22958328 nonsynonymous SNV . 0 16 hm5C_associated_SNPs_41934 0 0 1 0 1 CYFIP1 chr15:22958342 5'GT 22958342 Upstream 15bp
chr11 125475562 125475562 1 + T C UCEC 125475549 + 125475529 125475569 41 GCCATCTTTTGCATGCTACTCACCTACTACATGTGGATCAA GCCATCTTTTGCATGCTACTCACCTACTACATGCGGATCAA < 41bp 1 0.620505324852442 1 0.19466495513916 experiment 0.758989350295116 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STT3A ENSG00000134910 CDS Human protein_coding chr11:125475549 chr11:125475562 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_41935 0 0 1 0 2 STT3A chr11:125475524 3'AG 125475524 Downstream 39bp
chr11 125475562 125475562 1 + T C UCEC 125475549 + 125475529 125475569 41 GCCATCTTTTGCATGCTACTCACCTACTACATGTGGATCAA GCCATCTTTTGCATGCTACTCACCTACTACATGCGGATCAA < 41bp 1 0.620505324852442 1 0.19466495513916 experiment 0.758989350295116 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STT3A ENSG00000134910 CDS Human protein_coding chr11:125475549 chr11:125475562 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_41935 0 0 1 0 2 STT3A chr11:125475630 5'GT 125475630 Upstream 69bp
chr13 20233208 20233208 1 + G A UCEC 20233203 + 20233183 20233223 41 GGATGAAGTTGGAAGATTTCCAAAAGCACCTTGATGGGAAA GGATGAAGTTGGAAGATTTCCAAAAACACCTTGATGGGAAA < 41bp 1 0.686362101574595 1 0.827344715595245 experiment 0.62727579685081 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MPHOSPH8 ENSG00000196199 CDS Human protein_coding chr13:20233203 chr13:20233208 synonymous SNV . 0 26 hm5C_associated_SNPs_41940 0 0 1 0 2 MPHOSPH8 chr13:20233135 3'AG 20233135 Downstream 74bp
chr13 20233208 20233208 1 + G A UCEC 20233203 + 20233183 20233223 41 GGATGAAGTTGGAAGATTTCCAAAAGCACCTTGATGGGAAA GGATGAAGTTGGAAGATTTCCAAAAACACCTTGATGGGAAA < 41bp 1 0.686362101574595 1 0.827344715595245 experiment 0.62727579685081 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MPHOSPH8 ENSG00000196199 CDS Human protein_coding chr13:20233203 chr13:20233208 synonymous SNV . 0 26 hm5C_associated_SNPs_41940 0 0 1 0 2 MPHOSPH8 chr13:20233260 5'GT 20233260 Upstream 53bp
chr14 103802216 103802216 1 + C T UCEC 103802231 + 103802211 103802251 41 TCAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATG TCAACTGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATG < 41bp 1 0.19156655520101 1 0.0682340264320374 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103802231 chr14:103802216 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_41941 0 0 1 0 1 EIF5 chr14:103802269 5'GT 103802269 Upstream 54bp
chr19 46519591 46519591 1 + G A UCEC 46519595 + 46519575 46519615 41 GGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTTTGTGAA GGTGGTCGCGCGCTCCACTTCGACCCCACGGCCTTTGTGAA < 41bp 1 0.293300237261592 1 0.353145718574524 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46519595 chr19:46519591 nonsynonymous SNV 0.796 3 17 hm5C_associated_SNPs_41942 0 0 0 0 2 CCDC61 chr19:46519576 3'AG 46519576 Downstream 16bp
chr19 46519591 46519591 1 + G A UCEC 46519595 + 46519575 46519615 41 GGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTTTGTGAA GGTGGTCGCGCGCTCCACTTCGACCCCACGGCCTTTGTGAA < 41bp 1 0.293300237261592 1 0.353145718574524 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46519595 chr19:46519591 nonsynonymous SNV 0.796 3 17 hm5C_associated_SNPs_41942 0 0 0 0 2 CCDC61 chr19:46519651 5'GT 46519651 Upstream 61bp
chr5 6746350 6746350 1 + G T UCEC 6746347 + 6746327 6746367 41 TTGCATCCAAGAATTGATGCCCGGAGAGCTGATGAAAACCT TTGCATCCAAGAATTGATGCCCGTAGAGCTGATGAAAACCT < 41bp 1 0.12230150175135 1 0.117856800556183 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6746347 chr5:6746350 synonymous SNV . 0 24 hm5C_associated_SNPs_41943 0 0 1 0 1 PAPD7 chr5:6746327 3'AG 6746327 Downstream 24bp
chr22 26242226 26242226 1 + G A UCEC 26242222 + 26242202 26242242 41 TGCCGCGGTGAGGAGGAAAGCCCCGTGCTCCCAGATCAAGC TGCCGCGGTGAGGAGGAAAGCCCCATGCTCCCAGATCAAGC < 41bp 1 0.42862235203976 1 0.238795816898346 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26242222 chr22:26242226 synonymous SNV . 0 25 hm5C_associated_SNPs_41945 0 0 0 0 1 MYO18B chr22:26242250 5'GT 26242250 Upstream 25bp
chr17 7401125 7401125 1 + G A UCEC 7401133 + 7401113 7401153 41 GACCAGGTTGGCGTGCCCCGCTCCATTGCTGCCAACATGAC GACCAGGTTGGCATGCCCCGCTCCATTGCTGCCAACATGAC < 41bp 1 0.640603462144373 1 0.916956782341003 experiment 0.718793075711255 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR2A ENSG00000181222 CDS Human protein_coding chr17:7401133 chr17:7401125 nonsynonymous SNV 0.998 3 13 hm5C_associated_SNPs_41947 0 0 1 0 1 POLR2A chr17:7401189 5'GT 7401189 Upstream 65bp
chr11 62553756 62553756 1 + C T UCEC 62553759 + 62553739 62553779 41 AACGAGTCCTGTACCCACACCTGTCCACCTACTGGACAAAC AACGAGTCCTGTACCCATACCTGTCCACCTACTGGACAAAC < 41bp 1 0.0740322815581776 1 0.0321565270423889 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF6L ENSG00000162227 CDS Human protein_coding chr11:62553759 chr11:62553756 nonsynonymous SNV 0.998 2 18 hm5C_associated_SNPs_41948 0 0 1 0 1 TAF6L chr11:62553732 3'AG 62553732 Downstream 25bp
chr19 33586713 33586713 1 + C T UCEC 33586722 + 33586702 33586742 41 CCCTGGAAGCTCGGAAGGATCTGAGGTATTGCATGGTGTGA CCCTGGAAGCTTGGAAGGATCTGAGGTATTGCATGGTGTGA < 41bp 1 0.751041376106419 1 0.167417287826538 experiment 0.497917247787162 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33586722 chr19:33586713 nonsynonymous SNV 0.988 2 12 hm5C_associated_SNPs_41949 0 0 1 0 2 GPATCH1 chr19:33586668 3'AG 33586668 Downstream 46bp
chr19 33586713 33586713 1 + C T UCEC 33586722 + 33586702 33586742 41 CCCTGGAAGCTCGGAAGGATCTGAGGTATTGCATGGTGTGA CCCTGGAAGCTTGGAAGGATCTGAGGTATTGCATGGTGTGA < 41bp 1 0.751041376106419 1 0.167417287826538 experiment 0.497917247787162 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33586722 chr19:33586713 nonsynonymous SNV 0.988 2 12 hm5C_associated_SNPs_41949 0 0 1 0 2 GPATCH1 chr19:33586726 5'GT 33586726 Upstream 14bp
chr1 155583321 155583321 1 + C A UCEC 155583316 + 155583296 155583336 41 TGTACCACTGGGGAAGAAATCTTGGCTCAGTATTTACAACA TGTACCACTGGGGAAGAAATCTTGGATCAGTATTTACAACA < 41bp 1 0.715728370039795 1 0.720267713069916 experiment 0.56854325992041 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155583316 chr1:155583321 nonsynonymous SNV 0.933 1 26 hm5C_associated_SNPs_41950 0 0 0 0 2 MSTO1 chr1:155583253 3'AG 155583253 Downstream 69bp
chr1 155583321 155583321 1 + C A UCEC 155583316 + 155583296 155583336 41 TGTACCACTGGGGAAGAAATCTTGGCTCAGTATTTACAACA TGTACCACTGGGGAAGAAATCTTGGATCAGTATTTACAACA < 41bp 1 0.715728370039795 1 0.720267713069916 experiment 0.56854325992041 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155583316 chr1:155583321 nonsynonymous SNV 0.933 1 26 hm5C_associated_SNPs_41950 0 0 0 0 2 MSTO1 chr1:155583357 5'GT 155583357 Upstream 37bp
chr19 4013007 4013007 1 + C T UCEC 4013020 + 4013000 4013040 41 ACGAGCTCGTCACCAGGGCCCTCCAGCTGGTGCAGTTTGAC ACGAGCTTGTCACCAGGGCCCTCCAGCTGGTGCAGTTTGAC < 41bp 1 0.578623675371974 1 0.756624579429626 experiment 0.842752649256052 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PIAS4 ENSG00000105229 CDS Human protein_coding chr19:4013020 chr19:4013007 synonymous SNV . 0 8 hm5C_associated_SNPs_41951 0 0 1 0 1 PIAS4 chr19:4012921 3'AG 4012921 Downstream 87bp
chr4 76711330 76711330 1 + C T UCEC 76711339 + 76711319 76711359 41 CAGAAGTTATTCGAGGCTGCCAAGTAAACCAAGACTACTTT CAGAAGTTATTTGAGGCTGCCAAGTAAACCAAGACTACTTT < 41bp 1 0.365517186792958 1 0.347448140382767 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control USO1 ENSG00000138768 CDS Human protein_coding chr4:76711339 chr4:76711330 stopgain 0.997 1 12 hm5C_associated_SNPs_41952 0 0 1 0 2 USO1 chr4:76711303 3'AG 76711303 Downstream 28bp
chr4 76711330 76711330 1 + C T UCEC 76711339 + 76711319 76711359 41 CAGAAGTTATTCGAGGCTGCCAAGTAAACCAAGACTACTTT CAGAAGTTATTTGAGGCTGCCAAGTAAACCAAGACTACTTT < 41bp 1 0.365517186792958 1 0.347448140382767 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control USO1 ENSG00000138768 CDS Human protein_coding chr4:76711339 chr4:76711330 stopgain 0.997 1 12 hm5C_associated_SNPs_41952 0 0 1 0 2 USO1 chr4:76711391 5'GT 76711391 Upstream 62bp
chr11 118245893 118245893 1 + C T UCEC 118245886 + 118245866 118245906 41 CTCACCTTTAATCCCACATACTGTGCCCTCAAGGAGTTGAA CTCACCTTTAATCCCACATACTGTGCCTTCAAGGAGTTGAA < 41bp 1 0.183380718929517 1 0.0758862197399139 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE4A ENSG00000110344 CDS Human protein_coding chr11:118245886 chr11:118245893 nonsynonymous SNV 0.994 3 28 hm5C_associated_SNPs_41953 0 0 1 0 1 UBE4A chr11:118245944 5'GT 118245944 Upstream 52bp
chr17 37872134 37872134 1 + C A UCEC 37872129 + 37872109 37872149 41 TGCACACGGTGCCCTGGGACCAGCTCTTTCGGAACCCGCAC TGCACACGGTGCCCTGGGACCAGCTATTTCGGAACCCGCAC < 41bp 1 0.553875610065308 1 0.411798536777496 experiment 0.892248779869385 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37872129 chr17:37872134 synonymous SNV . 0 26 hm5C_associated_SNPs_41954 0 0 1 0 1 ERBB2 chr17:37872192 5'GT 37872192 Upstream 59bp
chr16 67314908 67314908 1 + G T UCEC 67314905 + 67314885 67314925 41 GCTGTACCTGCGAAGCATCCCCAGGTTTGAGGGAGGGGGTT GCTGTACCTGCGAAGCATCCCCATGTTTGAGGGAGGGGGTT < 41bp 1 0.103427441091042 1 0.136990904808044 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67314905 chr16:67314908 nonsynonymous SNV 0.963 3 24 hm5C_associated_SNPs_41955 0 0 1 0 1 PLEKHG4 chr16:67314908 5'GT 67314908 Upstream 1bp
chr3 182591767 182591767 1 + G T UCEC 182591776 + 182591756 182591796 41 GAAATCAGACAGCGAGTGTGCTGAACAATTGAGGCAGCTTG GAAATCAGACATCGAGTGTGCTGAACAATTGAGGCAGCTTG < 41bp 1 0.458637842426412 1 0.161102533340454 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP11B ENSG00000058063 CDS Human protein_coding chr3:182591776 chr3:182591767 nonsynonymous SNV 0.116 1 12 hm5C_associated_SNPs_41956 0 0 1 0 1 ATP11B chr3:182591803 5'GT 182591803 Upstream 37bp
chr1 45243689 45243689 1 + G T UCEC 45243698 + 45243678 45243718 41 GAGGAAGAAGAGATTTTAAACAAAAAACGATCTAAAAAAAT GAGGAAGAAGATATTTTAAACAAAAAACGATCTAAAAAAAT < 41bp 1 0.361882964265577 1 0.451520532369614 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS8 ENSG00000142937 CDS Human protein_coding chr1:45243698 chr1:45243689 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_41958 0 0 0 0 1 RPS8 chr1:45243672 3'AG 45243672 Downstream 18bp
chr1 45243689 45243689 1 + G T UCEC 45243709 + 45243689 45243729 41 GATTTTAAACAAAAAACGATCTAAAAAAATTCAGAAGAAAT TATTTTAAACAAAAAACGATCTAAAAAAATTCAGAAGAAAT < 41bp 1 0.283989435619584 1 0.253224432468414 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS8 ENSG00000142937 CDS Human protein_coding chr1:45243709 chr1:45243689 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_41959 0 0 0 0 1 RPS8 chr1:45243672 3'AG 45243672 Downstream 18bp
chr9 33313659 33313659 1 + G T UCEC 33313662 + 33313642 33313682 41 GTCTTTACAGGCACACAGTTCGCTGTGGTCAGGCTGTCTCA GTCTTTACAGGCACACATTTCGCTGTGGTCAGGCTGTCTCA < 41bp 1 0.542147072413945 1 0.807722151279449 experiment 0.915705855172111 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33313662 chr9:33313659 nonsynonymous SNV 0.998 4 18 hm5C_associated_SNPs_41960 0 0 1 0 1 NFX1 chr9:33313652 3'AG 33313652 Downstream 8bp
chr17 29857373 29857373 1 + C T UCEC 29857365 + 29857345 29857385 41 AGAATTATAAGCTGCGGGATCAGAACGACGACTTGAATGGG AGAATTATAAGCTGCGGGATCAGAACGATGACTTGAATGGG < 41bp 1 0.35175150905066 1 0.550864338874817 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RAB11FIP4 ENSG00000131242 CDS Human protein_coding chr17:29857365 chr17:29857373 synonymous SNV . 0 29 hm5C_associated_SNPs_41961 0 0 1 0 1 RAB11FIP4 chr17:29857344 3'AG 29857344 Downstream 30bp
chr10 93605610 93605610 1 + A C UCEC 93605612 + 93605592 93605632 41 AGCAGCCCAAAAGGGACGAACACAGCTTTGTGCTTTGTTGC AGCAGCCCAAAAGGGACGCACACAGCTTTGTGCTTTGTTGC < 41bp 1 0.369525432310222 1 0.151111721992493 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TNKS2 ENSG00000107854 CDS Human protein_coding chr10:93605612 chr10:93605610 synonymous SNV . 0 19 hm5C_associated_SNPs_41962 0 0 1 0 1 TNKS2 chr10:93605697 5'GT 93605697 Upstream 88bp
chr5 140084097 140084097 1 + A T UCEC 140084084 + 140084064 140084104 41 GTGAAGAAACGTTTTGAGGTCAACAAGAAGAAGATGGAAGA GTGAAGAAACGTTTTGAGGTCAACAAGAAGAAGTTGGAAGA < 41bp 1 0.719844662584998 1 0.346966713666916 experiment 0.560310674830003 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084084 chr5:140084097 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_41963 0 0 1 0 2 ZMAT2 chr5:140084011 3'AG 140084011 Downstream 87bp
chr5 140084097 140084097 1 + A T UCEC 140084084 + 140084064 140084104 41 GTGAAGAAACGTTTTGAGGTCAACAAGAAGAAGATGGAAGA GTGAAGAAACGTTTTGAGGTCAACAAGAAGAAGTTGGAAGA < 41bp 1 0.719844662584998 1 0.346966713666916 experiment 0.560310674830003 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084084 chr5:140084097 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_41963 0 0 1 0 2 ZMAT2 chr5:140084156 5'GT 140084156 Upstream 60bp
chr5 140084097 140084097 1 + A T UCEC 140084087 + 140084067 140084107 41 AAGAAACGTTTTGAGGTCAACAAGAAGAAGATGGAAGAGAA AAGAAACGTTTTGAGGTCAACAAGAAGAAGTTGGAAGAGAA < 41bp 1 0.765508004786561 1 0.555469810962677 experiment 0.468983990426878 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084087 chr5:140084097 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_41964 0 0 1 0 2 ZMAT2 chr5:140084011 3'AG 140084011 Downstream 87bp
chr5 140084097 140084097 1 + A T UCEC 140084087 + 140084067 140084107 41 AAGAAACGTTTTGAGGTCAACAAGAAGAAGATGGAAGAGAA AAGAAACGTTTTGAGGTCAACAAGAAGAAGTTGGAAGAGAA < 41bp 1 0.765508004786561 1 0.555469810962677 experiment 0.468983990426878 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084087 chr5:140084097 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_41964 0 0 1 0 2 ZMAT2 chr5:140084156 5'GT 140084156 Upstream 60bp
chr5 140084097 140084097 1 + A T UCEC 140084109 + 140084089 140084129 41 AGAAGAAGATGGAAGAGAAGCAGAAGGATTATGATTTTGAG AGAAGAAGTTGGAAGAGAAGCAGAAGGATTATGATTTTGAG < 41bp 1 0.795433460679632 1 0.646987438201904 experiment 0.409133078640735 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084109 chr5:140084097 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_41965 0 0 1 0 2 ZMAT2 chr5:140084011 3'AG 140084011 Downstream 87bp
chr5 140084097 140084097 1 + A T UCEC 140084109 + 140084089 140084129 41 AGAAGAAGATGGAAGAGAAGCAGAAGGATTATGATTTTGAG AGAAGAAGTTGGAAGAGAAGCAGAAGGATTATGATTTTGAG < 41bp 1 0.795433460679632 1 0.646987438201904 experiment 0.409133078640735 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084109 chr5:140084097 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_41965 0 0 1 0 2 ZMAT2 chr5:140084156 5'GT 140084156 Upstream 60bp
chr6 43188313 43188313 1 + C A UCEC 43188295 + 43188275 43188315 41 CCCGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC CCCGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTATC < 41bp 1 0.441788211716442 1 0.411536008119583 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188295 chr6:43188313 synonymous SNV . 0 39 hm5C_associated_SNPs_41966 0 0 0 0 1 CUL9 chr6:43188337 5'GT 43188337 Upstream 25bp
chr19 42398349 42398349 1 + G T UCEC 42398364 + 42398344 42398384 41 GACAAGAAGTCGGGGAGGAACTTCTTCCGGAAAAAGGTGCT GACAATAAGTCGGGGAGGAACTTCTTCCGGAAAAAGGTGCT < 41bp 1 0.125150237548605 1 0.447215974330902 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42398364 chr19:42398349 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_41967 0 0 1 0 2 ARHGEF1 chr19:42398280 3'AG 42398280 Downstream 70bp
chr19 42398349 42398349 1 + G T UCEC 42398364 + 42398344 42398384 41 GACAAGAAGTCGGGGAGGAACTTCTTCCGGAAAAAGGTGCT GACAATAAGTCGGGGAGGAACTTCTTCCGGAAAAAGGTGCT < 41bp 1 0.125150237548605 1 0.447215974330902 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42398364 chr19:42398349 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_41967 0 0 1 0 2 ARHGEF1 chr19:42398379 5'GT 42398379 Upstream 31bp
chr11 65063437 65063437 1 + G A UCEC 65063444 + 65063424 65063464 41 TCCTCATCATCCCGTCAGAGCTGAGGTACTTCGTGAAGGTA TCCTCATCATCCCATCAGAGCTGAGGTACTTCGTGAAGGTA < 41bp 1 0.29682996792015 1 0.0581005215644836 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control POLA2 ENSG00000014138 CDS Human protein_coding chr11:65063444 chr11:65063437 synonymous SNV . 0 14 hm5C_associated_SNPs_41968 0 0 1 0 1 POLA2 chr11:65063461 5'GT 65063461 Upstream 25bp
chr12 9070335 9070335 1 + G A UCEC 9070333 + 9070313 9070353 41 GGGAGTTCTAGCTCAGGGGGCAGCTCTCGGCCCCAGATAGC GGGAGTTCTAGCTCAGGGGGCAACTCTCGGCCCCAGATAGC < 41bp 1 0.127492376991692 1 0.126035124063492 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHC1 ENSG00000111752 CDS Human protein_coding chr12:9070333 chr12:9070335 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_41969 0 0 0 0 1 PHC1 chr12:9070387 5'GT 9070387 Upstream 53bp
chr2 171822300 171822300 1 + G A UCEC 171822305 + 171822285 171822325 41 CCGTTTTTGTCCTAGGTCTGCCACCTCTTCCTTCCATGCCT CCGTTTTTGTCCTAGATCTGCCACCTCTTCCTTCCATGCCT < 41bp 1 0.127527970093027 1 0.0702346861362457 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171822305 chr2:171822300 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_41970 0 0 1 0 1 GORASP2 chr2:171822300 3'AG 171822300 Downstream 1bp
chr1 151063024 151063024 1 + C T UCEC 151063038 + 151063018 151063058 41 GACATGCGCACATCGTGGAACTGCTTGTTCGGGTAAAGCAA GACATGTGCACATCGTGGAACTGCTTGTTCGGGTAAAGCAA < 41bp 1 0.424341051769106 1 0.175727218389511 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GABPB2 ENSG00000143458 CDS Human protein_coding chr1:151063038 chr1:151063024 nonsynonymous SNV 0.752 0 7 hm5C_associated_SNPs_41971 0 0 0 0 1 GABPB2 chr1:151063049 5'GT 151063049 Upstream 26bp
chr8 59347027 59347027 1 + C T UCEC 59347026 + 59347006 59347046 41 AATTGAGACCTTACAATGAACCAACAAATGCTCAATTTCTG AATTGAGACCTTACAATGAACTAACAAATGCTCAATTTCTG < 41bp 1 0.162282751946251 1 0.0614343881607056 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UBXN2B ENSG00000215114 CDS Human protein_coding chr8:59347026 chr8:59347027 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_41972 0 0 0 0 1 UBXN2B chr8:59346954 3'AG 59346954 Downstream 74bp
chr11 4091346 4091346 1 + G A UCEC 4091338 + 4091318 4091358 41 GGCTGCTGGTTTGCCTATATCCAGAACCGTTACTCCAAGGA GGCTGCTGGTTTGCCTATATCCAGAACCATTACTCCAAGGA < 41bp 1 0.673949060429481 1 0.659039676189423 experiment 0.652101879141037 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STIM1 ENSG00000167323 CDS Human protein_coding chr11:4091338 chr11:4091346 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_41973 0 0 1 0 2 STIM1 chr11:4091256 3'AG 4091256 Downstream 91bp
chr11 4091346 4091346 1 + G A UCEC 4091338 + 4091318 4091358 41 GGCTGCTGGTTTGCCTATATCCAGAACCGTTACTCCAAGGA GGCTGCTGGTTTGCCTATATCCAGAACCATTACTCCAAGGA < 41bp 1 0.673949060429481 1 0.659039676189423 experiment 0.652101879141037 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STIM1 ENSG00000167323 CDS Human protein_coding chr11:4091338 chr11:4091346 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_41973 0 0 1 0 2 STIM1 chr11:4091433 5'GT 4091433 Upstream 88bp
chr19 36510139 36510139 1 + C T UCEC 36510143 + 36510123 36510163 41 TTCTTGCCCTCAGGTTCGTCCAGCTCCACGCCCACCCACTG TTCTTGCCCTCAGGTTTGTCCAGCTCCACGCCCACCCACTG < 41bp 1 0.464169440029277 1 0.738029062747955 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLIP3;LOC101927572 ENSG00000105270 CDS Human protein_coding chr19:36510143 chr19:36510139 nonsynonymous SNV 0.994 3 17 hm5C_associated_SNPs_41974 0 0 0 0 1 CLIP3;LOC101927572 chr19:36510136 3'AG 36510136 Downstream 4bp
chr11 67075182 67075182 1 + G A UCEC 67075191 + 67075171 67075211 41 CTGGAGTCTCTGCGGCCTCCCAGCGCCGAGCCTGGCGGGTC CTGGAGTCTCTACGGCCTCCCAGCGCCGAGCCTGGCGGGTC < 41bp 1 0.628298825376902 1 0.728013217449188 experiment 0.743402349246196 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075191 chr11:67075182 synonymous SNV . 0 12 hm5C_associated_SNPs_41975 0 0 1 0 1 SSH3 chr11:67075208 5'GT 67075208 Upstream 27bp
chr14 75904644 75904644 1 + G A UCEC 75904659 + 75904639 75904679 41 ATCCCGGACCCTTCGGTGACCACAGGCTCCCTGCCAGGGCT ATCCCAGACCCTTCGGTGACCACAGGCTCCCTGCCAGGGCT < 41bp 1 0.750479122584017 1 0.542488217353821 experiment 0.499041754831966 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JDP2 ENSG00000140044 CDS Human protein_coding chr14:75904659 chr14:75904644 synonymous SNV . 0 6 hm5C_associated_SNPs_41979 0 0 1 0 1 JDP2 chr14:75904601 3'AG 75904601 Downstream 44bp
chr20 43052693 43052693 1 + C T UCEC 43052674 + 43052654 43052694 41 GTAGATGCCAAGGGGCTGAGCGATCCAGGGAAGATCAAGCG GTAGATGCCAAGGGGCTGAGCGATCCAGGGAAGATCAAGTG < 41bp 1 0.165406028760225 1 0.397149056196213 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HNF4A ENSG00000101076 CDS Human protein_coding chr20:43052674 chr20:43052693 nonsynonymous SNV 0.998 5 40 hm5C_associated_SNPs_41980 0 0 1 0 1 HNF4A chr20:43052658 3'AG 43052658 Downstream 36bp
chr7 99751528 99751528 1 + G T UCEC 99751531 + 99751511 99751551 41 TGCTGGTGACGGTGTCAGGACAGAGGGTGTTTGTGGTGAAG TGCTGGTGACGGTGTCATGACAGAGGGTGTTTGTGGTGAAG < 41bp 1 0.746735313777967 1 0.77118992805481 experiment 0.506529372444066 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMTOR4 ENSG00000188186 CDS Human protein_coding chr7:99751531 chr7:99751528 stopgain 1.000 1 18 hm5C_associated_SNPs_41983 0 0 1 0 1 LAMTOR4 chr7:99751490 3'AG 99751490 Downstream 39bp
chr10 122664313 122664313 1 + C T UCEC 122664294 + 122664274 122664314 41 CACCATTAAGTTGGTGGCAACGAATATGATTGCCAATGGCA CACCATTAAGTTGGTGGCAACGAATATGATTGCCAATGGTA < 41bp 1 0.201389291460733 1 0.298098653554916 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122664294 chr10:122664313 synonymous SNV . 0 40 hm5C_associated_SNPs_41984 0 0 1 0 1 WDR11 chr10:122664323 5'GT 122664323 Upstream 11bp
chr4 3205784 3205784 1 + A C UCEC 3205778 + 3205758 3205798 41 GTTACTTAGTCCCCAGATGTCTGGAGAAGAGGAGGATTCTG GTTACTTAGTCCCCAGATGTCTGGAGCAGAGGAGGATTCTG < 41bp 1 0.656414844690216 1 0.850450992584229 experiment 0.687170310619567 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3205778 chr4:3205784 nonsynonymous SNV 0.986 0 27 hm5C_associated_SNPs_41986 0 0 1 0 2 HTT chr4:3205734 3'AG 3205734 Downstream 51bp
chr4 3205784 3205784 1 + A C UCEC 3205778 + 3205758 3205798 41 GTTACTTAGTCCCCAGATGTCTGGAGAAGAGGAGGATTCTG GTTACTTAGTCCCCAGATGTCTGGAGCAGAGGAGGATTCTG < 41bp 1 0.656414844690216 1 0.850450992584229 experiment 0.687170310619567 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3205778 chr4:3205784 nonsynonymous SNV 0.986 0 27 hm5C_associated_SNPs_41986 0 0 1 0 2 HTT chr4:3205875 5'GT 3205875 Upstream 92bp
chr22 31485784 31485784 1 + C A UCEC 31485804 + 31485784 31485824 41 CTGCGAGCCCCACCTGGGAGCACATCCAGCTCACCTGCCTC ATGCGAGCCCCACCTGGGAGCACATCCAGCTCACCTGCCTC < 41bp 1 0.19354141314955 1 0.172720342874527 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMTN ENSG00000183963 CDS Human protein_coding chr22:31485804 chr22:31485784 nonsynonymous SNV 0.923 3 1 hm5C_associated_SNPs_41987 0 0 1 0 1 SMTN chr22:31485685 3'AG 31485685 Downstream 100bp
chr11 61505629 61505629 1 + G T UCEC 61505613 + 61505593 61505633 41 CGTTCCCTCCCCAGGATTGGCCTCTCTCAGCTGGAAGGCTT CGTTCCCTCCCCAGGATTGGCCTCTCTCAGCTGGAATGCTT < 41bp 1 0.028293708944796 1 0.0326513350009918 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61505613 chr11:61505629 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_41988 0 0 1 0 2 DAGLA chr11:61505607 3'AG 61505607 Downstream 23bp
chr11 61505629 61505629 1 + G T UCEC 61505613 + 61505593 61505633 41 CGTTCCCTCCCCAGGATTGGCCTCTCTCAGCTGGAAGGCTT CGTTCCCTCCCCAGGATTGGCCTCTCTCAGCTGGAATGCTT < 41bp 1 0.028293708944796 1 0.0326513350009918 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61505613 chr11:61505629 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_41988 0 0 1 0 2 DAGLA chr11:61505679 5'GT 61505679 Upstream 51bp
chr12 112926261 112926261 1 + G A UCEC 112926274 + 112926254 112926294 41 ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTTAT ATTGGCCAGACAGGGACGTTCATTGTGATTGATATTCTTAT < 41bp 1 0.144809631366017 1 0.0155549347400665 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926274 chr12:112926261 nonsynonymous SNV 1.000 5 8 hm5C_associated_SNPs_41989 0 0 1 0 2 PTPN11 chr12:112926247 3'AG 112926247 Downstream 15bp
chr12 112926261 112926261 1 + G A UCEC 112926274 + 112926254 112926294 41 ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTTAT ATTGGCCAGACAGGGACGTTCATTGTGATTGATATTCTTAT < 41bp 1 0.144809631366017 1 0.0155549347400665 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926274 chr12:112926261 nonsynonymous SNV 1.000 5 8 hm5C_associated_SNPs_41989 0 0 1 0 2 PTPN11 chr12:112926314 5'GT 112926314 Upstream 54bp
chr20 4679918 4679918 1 + G A UCEC 4679908 + 4679888 4679928 41 ATGCTGGTTCTCTTTGTGGCCACATGGAGTGACCTGGGCCT ATGCTGGTTCTCTTTGTGGCCACATGGAGTAACCTGGGCCT < 41bp 1 0.612488339838592 1 0.804550409317017 experiment 0.775023320322816 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRNP ENSG00000171867 CDS Human protein_coding chr20:4679908 chr20:4679918 nonsynonymous SNV 0.994 2 31 hm5C_associated_SNPs_41991 0 0 1 0 1 PRNP chr20:4679862 3'AG 4679862 Downstream 57bp
chr11 10783513 10783513 1 + G A UCEC 10783524 + 10783504 10783544 41 TTAAAAATGGTGTCCAGCTTCTTTCCAGAGCCTATACTATT TTAAAAATGATGTCCAGCTTCTTTCCAGAGCCTATACTATT < 41bp 1 0.0324571514650097 1 0.0441203117370605 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTR9 ENSG00000198730 CDS Human protein_coding chr11:10783524 chr11:10783513 nonsynonymous SNV 0.992 4 10 hm5C_associated_SNPs_41992 0 0 1 0 2 CTR9 chr11:10783494 3'AG 10783494 Downstream 20bp
chr11 10783513 10783513 1 + G A UCEC 10783524 + 10783504 10783544 41 TTAAAAATGGTGTCCAGCTTCTTTCCAGAGCCTATACTATT TTAAAAATGATGTCCAGCTTCTTTCCAGAGCCTATACTATT < 41bp 1 0.0324571514650097 1 0.0441203117370605 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTR9 ENSG00000198730 CDS Human protein_coding chr11:10783524 chr11:10783513 nonsynonymous SNV 0.992 4 10 hm5C_associated_SNPs_41992 0 0 1 0 2 CTR9 chr11:10783601 5'GT 10783601 Upstream 89bp
chr9 35560814 35560814 1 + C T UCEC 35560834 + 35560814 35560854 41 CGAAAAGCCCAGCGGGAGGCCCGGCCCACAAATAGGTGAGA TGAAAAGCCCAGCGGGAGGCCCGGCCCACAAATAGGTGAGA < 41bp 1 0.0912974429835068 1 0.517706453800201 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RUSC2 ENSG00000198853 CDS Human protein_coding chr9:35560834 chr9:35560814 stopgain 0.984 1 1 hm5C_associated_SNPs_41993 0 0 0 0 1 RUSC2 chr9:35560848 5'GT 35560848 Upstream 35bp
chr7 129096288 129096288 1 + C T UCEC 129096284 + 129096264 129096304 41 CCTGTTTCTTCCTTAGTTTACCCTCGGTGGATTTGAGCATC CCTGTTTCTTCCTTAGTTTACCCTTGGTGGATTTGAGCATC < 41bp 1 0.156127709524209 1 0.0543960928916931 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129096284 chr7:129096288 synonymous SNV . 0 25 hm5C_associated_SNPs_41994 0 0 1 0 1 STRIP2 chr7:129096280 3'AG 129096280 Downstream 9bp
chr12 3149338 3149338 1 + G C UCEC 3149330 + 3149310 3149350 41 ACCGCATCCACCGGTCCCCGCTCTGTGAGTACATGATCAAC ACCGCATCCACCGGTCCCCGCTCTGTGACTACATGATCAAC < 41bp 1 0.150204680084144 1 0.347613036632538 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3149330 chr12:3149338 nonsynonymous SNV 0.995 1 29 hm5C_associated_SNPs_42000 0 0 1 0 2 TEAD4 chr12:3149273 3'AG 3149273 Downstream 66bp
chr12 3149338 3149338 1 + G C UCEC 3149330 + 3149310 3149350 41 ACCGCATCCACCGGTCCCCGCTCTGTGAGTACATGATCAAC ACCGCATCCACCGGTCCCCGCTCTGTGACTACATGATCAAC < 41bp 1 0.150204680084144 1 0.347613036632538 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3149330 chr12:3149338 nonsynonymous SNV 0.995 1 29 hm5C_associated_SNPs_42000 0 0 1 0 2 TEAD4 chr12:3149425 5'GT 3149425 Upstream 88bp
chr4 38937395 38937395 1 + C A UCEC 38937401 + 38937381 38937421 41 GAAGTTTACGAATTCTTTAACCACTGTTGGGGTAAGATTAC GAAGTTTACGAATTATTTAACCACTGTTGGGGTAAGATTAC < 41bp 1 0.0916483499385153 1 0.120547950267792 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38937401 chr4:38937395 nonsynonymous SNV 0.784 1 15 hm5C_associated_SNPs_42001 0 0 1 0 2 FAM114A1 chr4:38937339 3'AG 38937339 Downstream 57bp
chr4 38937395 38937395 1 + C A UCEC 38937401 + 38937381 38937421 41 GAAGTTTACGAATTCTTTAACCACTGTTGGGGTAAGATTAC GAAGTTTACGAATTATTTAACCACTGTTGGGGTAAGATTAC < 41bp 1 0.0916483499385153 1 0.120547950267792 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38937401 chr4:38937395 nonsynonymous SNV 0.784 1 15 hm5C_associated_SNPs_42001 0 0 1 0 2 FAM114A1 chr4:38937411 5'GT 38937411 Upstream 17bp
chr4 38937395 38937395 1 + C A UCEC 38937402 + 38937382 38937422 41 AAGTTTACGAATTCTTTAACCACTGTTGGGGTAAGATTACA AAGTTTACGAATTATTTAACCACTGTTGGGGTAAGATTACA < 41bp 1 0.214225086712407 1 0.187070816755295 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38937402 chr4:38937395 nonsynonymous SNV 0.784 1 14 hm5C_associated_SNPs_42002 0 0 1 0 2 FAM114A1 chr4:38937339 3'AG 38937339 Downstream 57bp
chr4 38937395 38937395 1 + C A UCEC 38937402 + 38937382 38937422 41 AAGTTTACGAATTCTTTAACCACTGTTGGGGTAAGATTACA AAGTTTACGAATTATTTAACCACTGTTGGGGTAAGATTACA < 41bp 1 0.214225086712407 1 0.187070816755295 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38937402 chr4:38937395 nonsynonymous SNV 0.784 1 14 hm5C_associated_SNPs_42002 0 0 1 0 2 FAM114A1 chr4:38937411 5'GT 38937411 Upstream 17bp
chr10 135197560 135197560 1 + A G UCEC 135197543 + 135197523 135197563 41 GAAGCAATCAGGAAGATAGGCTTTGGGACCAACAACAAAAT GAAGCAATCAGGAAGATAGGCTTTGGGACCAACAACAGAAT < 41bp 1 0.141340828463402 1 0.0644612312316895 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAOX ENSG00000148832 CDS Human protein_coding chr10:135197543 chr10:135197560 nonsynonymous SNV 0.996 5 38 hm5C_associated_SNPs_42003 0 0 0 0 2 PAOX chr10:135197464 3'AG 135197464 Downstream 97bp
chr10 135197560 135197560 1 + A G UCEC 135197543 + 135197523 135197563 41 GAAGCAATCAGGAAGATAGGCTTTGGGACCAACAACAAAAT GAAGCAATCAGGAAGATAGGCTTTGGGACCAACAACAGAAT < 41bp 1 0.141340828463402 1 0.0644612312316895 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAOX ENSG00000148832 CDS Human protein_coding chr10:135197543 chr10:135197560 nonsynonymous SNV 0.996 5 38 hm5C_associated_SNPs_42003 0 0 0 0 2 PAOX chr10:135197474 3'AG 135197474 Downstream 87bp
chr3 155628661 155628661 1 + C T UCEC 155628644 + 155628624 155628664 41 CTTGAGTGTATTCGAGAGATCAAAGAGAGAGTAGGCACGTC CTTGAGTGTATTCGAGAGATCAAAGAGAGAGTAGGCATGTC < 41bp 1 0.494052176075427 1 0.190050572156906 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GMPS ENSG00000163655 CDS Human protein_coding chr3:155628644 chr3:155628661 nonsynonymous SNV 0.998 1 38 hm5C_associated_SNPs_42004 0 0 1 0 1 GMPS chr3:155628674 5'GT 155628674 Upstream 14bp
chr17 4846490 4846490 1 + G A UCEC 4846476 + 4846456 4846496 41 TGGTCATCCTTTTCCCAGGGCTCGGGTGCTTCTGGTTCCAG TGGTCATCCTTTTCCCAGGGCTCGGGTGCTTCTGATTCCAG < 41bp 1 0.628168949668332 1 0.115374863147736 experiment 0.743662100663337 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF167 ENSG00000108523 CDS Human protein_coding chr17:4846476 chr17:4846490 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_42005 0 0 1 0 2 RNF167 chr17:4846474 3'AG 4846474 Downstream 17bp
chr17 4846490 4846490 1 + G A UCEC 4846476 + 4846456 4846496 41 TGGTCATCCTTTTCCCAGGGCTCGGGTGCTTCTGGTTCCAG TGGTCATCCTTTTCCCAGGGCTCGGGTGCTTCTGATTCCAG < 41bp 1 0.628168949668332 1 0.115374863147736 experiment 0.743662100663337 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF167 ENSG00000108523 CDS Human protein_coding chr17:4846476 chr17:4846490 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_42005 0 0 1 0 2 RNF167 chr17:4846579 5'GT 4846579 Upstream 90bp
chr12 27908166 27908166 1 + T C UCEC 27908148 + 27908128 27908168 41 GGAAAAAAGTAAGACTGAAGCAGACATGGAAGAGTATATAT GGAAAAAAGTAAGACTGAAGCAGACATGGAAGAGTATACAT < 41bp 1 0.524419864169726 1 0.814183235168457 experiment 0.951160271660548 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPS35 ENSG00000061794 CDS Human protein_coding chr12:27908148 chr12:27908166 nonsynonymous SNV 0.749 0 39 hm5C_associated_SNPs_42006 0 0 1 0 1 MRPS35 chr12:27908114 3'AG 27908114 Downstream 53bp
chr17 37872116 37872116 1 + G A UCEC 37872129 + 37872109 37872149 41 TGCACACGGTGCCCTGGGACCAGCTCTTTCGGAACCCGCAC TGCACACAGTGCCCTGGGACCAGCTCTTTCGGAACCCGCAC < 41bp 1 0.47619935106922 1 0.241555601358414 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37872129 chr17:37872116 synonymous SNV . 0 8 hm5C_associated_SNPs_42007 0 0 1 0 1 ERBB2 chr17:37872192 5'GT 37872192 Upstream 77bp
chr1 202977795 202977795 1 + C T UCEC 202977810 + 202977790 202977830 41 GGAAGCCTCTCAGGTTCCTGCAGAGGAAGCTCTTTCTGGGG GGAAGTCTCTCAGGTTCCTGCAGAGGAAGCTCTTTCTGGGG < 41bp 1 0.733995182719843 1 0.747861981391907 experiment 0.532009634560314 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM183A;TMEM183B ENSG00000163444 CDS Human protein_coding chr1:202977810 chr1:202977795 nonsynonymous SNV 0.997 3 6 hm5C_associated_SNPs_42008 0 0 0 0 1 TMEM183A;TMEM183B chr1:202977771 3'AG 202977771 Downstream 25bp
chr1 45267334 45267334 1 + A G UCEC 45267317 + 45267297 45267337 41 CTGGCCCACATCTGGAAGGCCCGGCACACCCTGTTGGAGCC CTGGCCCACATCTGGAAGGCCCGGCACACCCTGTTGGGGCC < 41bp 1 0.243001246965872 1 0.514010369777679 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267317 chr1:45267334 nonsynonymous SNV 0.997 3 38 hm5C_associated_SNPs_42009 0 0 0 1 2 PLK3 chr1:45267294 3'AG 45267294 Downstream 41bp
chr1 45267334 45267334 1 + A G UCEC 45267317 + 45267297 45267337 41 CTGGCCCACATCTGGAAGGCCCGGCACACCCTGTTGGAGCC CTGGCCCACATCTGGAAGGCCCGGCACACCCTGTTGGGGCC < 41bp 1 0.243001246965872 1 0.514010369777679 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267317 chr1:45267334 nonsynonymous SNV 0.997 3 38 hm5C_associated_SNPs_42009 0 0 0 1 2 PLK3 chr1:45267423 5'GT 45267423 Upstream 90bp
chr22 39773695 39773695 1 + G A UCEC 39773703 + 39773683 39773723 41 GGCACAGCCGTAGGCCTCCCCGGCTTGCAGAGGCCGGCAGC GGCACAGCCGTAAGCCTCCCCGGCTTGCAGAGGCCGGCAGC < 41bp 1 0.405743730222616 1 0.389322638511658 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNGR1 ENSG00000100321 CDS Human protein_coding chr22:39773703 chr22:39773695 synonymous SNV . 0 13 hm5C_associated_SNPs_42010 0 0 1 0 1 SYNGR1 chr22:39773603 3'AG 39773603 Downstream 93bp
chr3 47374693 47374693 1 + G T UCEC 47374698 + 47374678 47374718 41 ACGACCGGGAGCAGAGGGGTCCCTACCTGCCTGAGCTGCTG ACGACCGGGAGCAGATGGGTCCCTACCTGCCTGAGCTGCTG < 41bp 1 0.317917712688329 1 0.415431201457977 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47374698 chr3:47374693 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_42012 0 0 1 0 1 KLHL18 chr3:47374647 3'AG 47374647 Downstream 47bp
chr6 118015229 118015229 1 + C A UCEC 118015223 + 118015203 118015243 41 GCCATTTGGCAGTGAAGGTGCTGTCTCCGGAAGATGGAAAA GCCATTTGGCAGTGAAGGTGCTGTCTACGGAAGATGGAAAA < 41bp 1 0.215488560098295 1 0.541188657283783 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUS1 ENSG00000153989 CDS Human protein_coding chr6:118015223 chr6:118015229 nonsynonymous SNV 0.976 1 27 hm5C_associated_SNPs_42016 0 0 0 0 1 NUS1 chr6:118015194 3'AG 118015194 Downstream 36bp
chr1 45267325 45267325 1 + C T UCEC 45267317 + 45267297 45267337 41 CTGGCCCACATCTGGAAGGCCCGGCACACCCTGTTGGAGCC CTGGCCCACATCTGGAAGGCCCGGCACATCCTGTTGGAGCC < 41bp 1 0.228376033942167 1 0.526292681694031 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267317 chr1:45267325 nonsynonymous SNV 0.993 1 29 hm5C_associated_SNPs_42017 0 0 1 1 2 PLK3 chr1:45267294 3'AG 45267294 Downstream 32bp
chr1 45267325 45267325 1 + C T UCEC 45267317 + 45267297 45267337 41 CTGGCCCACATCTGGAAGGCCCGGCACACCCTGTTGGAGCC CTGGCCCACATCTGGAAGGCCCGGCACATCCTGTTGGAGCC < 41bp 1 0.228376033942167 1 0.526292681694031 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267317 chr1:45267325 nonsynonymous SNV 0.993 1 29 hm5C_associated_SNPs_42017 0 0 1 1 2 PLK3 chr1:45267423 5'GT 45267423 Upstream 99bp
chr9 4697135 4697135 1 + C A UCEC 4697148 + 4697128 4697168 41 TTTTTGTCTGACCATCCATACCTTGTATGTGAAGAAACTGC TTTTTGTATGACCATCCATACCTTGTATGTGAAGAAACTGC < 41bp 1 0.055942349128512 1 0.0593304932117462 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC37L1 ENSG00000106993 CDS Human protein_coding chr9:4697148 chr9:4697135 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_42018 0 0 1 0 2 CDC37L1 chr9:4697096 3'AG 4697096 Downstream 40bp
chr9 4697135 4697135 1 + C A UCEC 4697148 + 4697128 4697168 41 TTTTTGTCTGACCATCCATACCTTGTATGTGAAGAAACTGC TTTTTGTATGACCATCCATACCTTGTATGTGAAGAAACTGC < 41bp 1 0.055942349128512 1 0.0593304932117462 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC37L1 ENSG00000106993 CDS Human protein_coding chr9:4697148 chr9:4697135 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_42018 0 0 1 0 2 CDC37L1 chr9:4697211 5'GT 4697211 Upstream 77bp
chrX 153677070 153677070 1 + G A UCEC 153677085 + 153677065 153677105 41 CTGCGGCAGGAGTGGGAAGCCAAGCAGGAGAAGATCAAGAG CTGCGACAGGAGTGGGAAGCCAAGCAGGAGAAGATCAAGAG < 41bp 1 0.675442536768906 1 0.748172283172607 experiment 0.649114926462187 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout FAM50A ENSG00000071859 CDS Human protein_coding chrX:153677085 chrX:153677070 synonymous SNV . 0 6 hm5C_associated_SNPs_42019 0 0 1 0 1 FAM50A chrX:153677038 3'AG 153677038 Downstream 33bp
chrX 24073093 24073093 1 + G A UCEC 24073094 + 24073074 24073114 41 TCTTTTGGCAACATGGCGGGCGGAGAAGCTGGAGTGACTCT TCTTTTGGCAACATGGCGGACGGAGAAGCTGGAGTGACTCT < 41bp 1 0.68488982497517 1 0.488284826278687 experiment 0.63022035004966 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF2S3 ENSG00000130741 CDS Human protein_coding chrX:24073094 chrX:24073093 nonsynonymous SNV 0.485 1 20 hm5C_associated_SNPs_42020 0 0 1 0 1 EIF2S3 chrX:24073154 5'GT 24073154 Upstream 62bp
chr1 154988762 154988762 1 + C T UCEC 154988768 + 154988748 154988788 41 TCATGCCCGCACTGCCCAGCCCGCTTCCTGCACAGCTACGA TCATGCCCGCACTGTCCAGCCCGCTTCCTGCACAGCTACGA < 41bp 1 0.211119997350988 1 0.104627966880798 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZBTB7B ENSG00000160685 CDS Human protein_coding chr1:154988768 chr1:154988762 synonymous SNV . 0 15 hm5C_associated_SNPs_42021 0 0 1 0 1 ZBTB7B chr1:154988696 3'AG 154988696 Downstream 67bp
chr19 11213371 11213371 1 + C A UCEC 11213368 + 11213348 11213388 41 ACCTGCAAATCCGGGGACTTCAGCTGTGGGGGCCGTGTCAA ACCTGCAAATCCGGGGACTTCAGATGTGGGGGCCGTGTCAA < 41bp 1 0.585493178460516 1 0.816340923309326 experiment 0.829013643078969 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LDLR ENSG00000130164 CDS Human protein_coding chr19:11213368 chr19:11213371 nonsynonymous SNV 0.976 2 24 hm5C_associated_SNPs_42024 0 0 1 0 1 LDLR chr19:11213462 5'GT 11213462 Upstream 92bp
chr1 235577774 235577774 1 + G A UCEC 235577765 + 235577745 235577785 41 CAGGCACCCGACAGGAGGATCCTTTATTCGTCCGAACAAGG CAGGCACCCGACAGGAGGATCCTTTATTCATCCGAACAAGG < 41bp 1 0.0139723917652393 1 0.0280433297157288 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235577765 chr1:235577774 nonsynonymous SNV 0.746 4 30 hm5C_associated_SNPs_42025 0 0 1 1 1 TBCE chr1:235577748 3'AG 235577748 Downstream 27bp
chr7 16823105 16823105 1 + G A UCEC 16823094 + 16823074 16823114 41 GAACCAGAAAGACCCCCGCGCGAATCCTAGTGCATTCCTTT GAACCAGAAAGACCCCCGCGCGAATCCTAGTACATTCCTTT < 41bp 1 0.168280452118939 1 0.139124095439911 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSPAN13 ENSG00000106537 CDS Human protein_coding chr7:16823094 chr7:16823105 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_42026 0 0 1 0 1 TSPAN13 chr7:16823042 3'AG 16823042 Downstream 64bp
chr1 183519926 183519926 1 + C T UCEC 183519913 + 183519893 183519933 41 AACACCAGCCAGCCAGTCTCCTCATTCCTCTAACCCAAGCA AACACCAGCCAGCCAGTCTCCTCATTCCTCTAATCCAAGCA < 41bp 1 0.306686711129035 1 0.455041706562042 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SMG7 ENSG00000116698 CDS Human protein_coding chr1:183519913 chr1:183519926 synonymous SNV . 0 34 hm5C_associated_SNPs_42029 0 0 1 0 1 SMG7 chr1:183519886 3'AG 183519886 Downstream 41bp
chr17 72239559 72239559 1 + C A UCEC 72239546 + 72239526 72239566 41 CTCCTGCTCTTTATCCTGGACCTGGTCATCTGCCTCATTGC CTCCTGCTCTTTATCCTGGACCTGGTCATCTGCATCATTGC < 41bp 1 0.116597926130508 1 0.0719596445560455 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72239546 chr17:72239559 nonsynonymous SNV 0.679 2 34 hm5C_associated_SNPs_42031 0 0 1 0 2 TTYH2 chr17:72239513 3'AG 72239513 Downstream 47bp
chr17 72239559 72239559 1 + C A UCEC 72239546 + 72239526 72239566 41 CTCCTGCTCTTTATCCTGGACCTGGTCATCTGCCTCATTGC CTCCTGCTCTTTATCCTGGACCTGGTCATCTGCATCATTGC < 41bp 1 0.116597926130508 1 0.0719596445560455 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72239546 chr17:72239559 nonsynonymous SNV 0.679 2 34 hm5C_associated_SNPs_42031 0 0 1 0 2 TTYH2 chr17:72239608 5'GT 72239608 Upstream 50bp
chr16 67572447 67572447 1 + G A UCEC 67572449 + 67572429 67572469 41 TCGGCAGCCACGAGCGGGGGCCCAGGTACGCGGCCGCGCAG TCGGCAGCCACGAGCGGGAGCCCAGGTACGCGGCCGCGCAG < 41bp 1 0.409361740264169 1 0.377862304449081 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572449 chr16:67572447 nonsynonymous SNV 0.997 0 19 hm5C_associated_SNPs_42032 0 0 0 0 1 RIPOR1 chr16:67572453 5'GT 67572453 Upstream 7bp
chr16 67572447 67572447 1 + G A UCEC 67572450 + 67572430 67572470 41 CGGCAGCCACGAGCGGGGGCCCAGGTACGCGGCCGCGCAGG CGGCAGCCACGAGCGGGAGCCCAGGTACGCGGCCGCGCAGG < 41bp 1 0.540123442799102 1 0.701860427856445 experiment 0.919753114401796 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572450 chr16:67572447 nonsynonymous SNV 0.997 0 18 hm5C_associated_SNPs_42033 0 0 0 0 1 RIPOR1 chr16:67572453 5'GT 67572453 Upstream 7bp
chr16 67572447 67572447 1 + G A UCEC 67572451 + 67572431 67572471 41 GGCAGCCACGAGCGGGGGCCCAGGTACGCGGCCGCGCAGGG GGCAGCCACGAGCGGGAGCCCAGGTACGCGGCCGCGCAGGG < 41bp 1 0.747166829818144 1 0.854987502098083 experiment 0.505666340363712 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572451 chr16:67572447 nonsynonymous SNV 0.997 0 17 hm5C_associated_SNPs_42034 0 0 0 0 1 RIPOR1 chr16:67572453 5'GT 67572453 Upstream 7bp
chr15 69738627 69738627 1 + G A UCEC 69738626 + 69738606 69738646 41 GTTTCCCCTTTTTCAGTAGTCGAAAACGAAGATCTTCCACA GTTTCCCCTTTTTCAGTAGTCAAAAACGAAGATCTTCCACA < 41bp 1 0.520385707963465 1 0.807718396186829 experiment 0.959228584073071 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69738626 chr15:69738627 nonsynonymous SNV 0.988 4 22 hm5C_associated_SNPs_42036 0 0 1 0 1 KIF23 chr15:69738622 3'AG 69738622 Downstream 6bp
chr4 88989059 88989059 1 + G A UCEC 88989056 + 88989036 88989076 41 CCCTTGTTCTTCAGGAGGACCTGGATTTGGATCACAGTTCT CCCTTGTTCTTCAGGAGGACCTGAATTTGGATCACAGTTCT < 41bp 1 0.638168265355131 1 0.302641242742538 experiment 0.723663469289738 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PKD2 ENSG00000118762 CDS Human protein_coding chr4:88989056 chr4:88989059 nonsynonymous SNV 0.964 2 24 hm5C_associated_SNPs_42037 0 0 0 0 1 PKD2 chr4:88989050 3'AG 88989050 Downstream 10bp
chr9 35733117 35733117 1 + G A UCEC 35733112 + 35733092 35733132 41 CATGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTAT CATGACCACACCTACTCCCTCCCACAGGAAACTGTCTCTAT < 41bp 1 0.100959047556381 1 0.140310704708099 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733112 chr9:35733117 nonsynonymous SNV 0.203 0 26 hm5C_associated_SNPs_42039 0 0 1 0 1 CREB3 chr9:35733140 5'GT 35733140 Upstream 24bp
chr9 35733117 35733117 1 + G A UCEC 35733113 + 35733093 35733133 41 ATGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTATG ATGACCACACCTACTCCCTCCCACAGGAAACTGTCTCTATG < 41bp 1 0.232575400944998 1 0.235690295696259 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733113 chr9:35733117 nonsynonymous SNV 0.203 0 25 hm5C_associated_SNPs_42040 0 0 1 0 1 CREB3 chr9:35733140 5'GT 35733140 Upstream 24bp
chr14 24773399 24773399 1 + C T UCEC 24773383 + 24773363 24773403 41 GACGGGACCACAGCTTCTGTCCCTTGCCCAAAGTCCCGCTG GACGGGACCACAGCTTCTGTCCCTTGCCCAAAGTCCTGCTG < 41bp 1 0.167831227228237 1 0.0389314293861389 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOP9 ENSG00000196943 CDS Human protein_coding chr14:24773383 chr14:24773399 synonymous SNV . 0 37 hm5C_associated_SNPs_42041 0 0 1 0 1 NOP9 chr14:24773483 5'GT 24773483 Upstream 85bp
chr21 46900433 46900433 1 + G A UCEC 46900416 + 46900396 46900436 41 GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTGCGGGT GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTGCAGGT < 41bp 1 0.0368815289945855 1 0.143819063901901 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900416 chr21:46900433 nonsynonymous SNV 0.181 2 38 hm5C_associated_SNPs_42042 0 0 1 0 2 COL18A1 chr21:46900381 3'AG 46900381 Downstream 53bp
chr21 46900433 46900433 1 + G A UCEC 46900416 + 46900396 46900436 41 GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTGCGGGT GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTGCAGGT < 41bp 1 0.0368815289945855 1 0.143819063901901 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900416 chr21:46900433 nonsynonymous SNV 0.181 2 38 hm5C_associated_SNPs_42042 0 0 1 0 2 COL18A1 chr21:46900434 5'GT 46900434 Upstream 2bp
chr19 50983440 50983440 1 + G A UCEC 50983456 + 50983436 50983476 41 GGAAGCTGGTGGCTATGTCTCCTCCTTTGTCCCTGCGGTGA GGAAACTGGTGGCTATGTCTCCTCCTTTGTCCCTGCGGTGA < 41bp 1 0.123378215376652 1 0.212720781564713 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMC10 ENSG00000161671 CDS Human protein_coding chr19:50983456 chr19:50983440 nonsynonymous SNV 0.918 0 5 hm5C_associated_SNPs_42043 0 0 1 0 2 EMC10 chr19:50983368 3'AG 50983368 Downstream 73bp
chr19 50983440 50983440 1 + G A UCEC 50983456 + 50983436 50983476 41 GGAAGCTGGTGGCTATGTCTCCTCCTTTGTCCCTGCGGTGA GGAAACTGGTGGCTATGTCTCCTCCTTTGTCCCTGCGGTGA < 41bp 1 0.123378215376652 1 0.212720781564713 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMC10 ENSG00000161671 CDS Human protein_coding chr19:50983456 chr19:50983440 nonsynonymous SNV 0.918 0 5 hm5C_associated_SNPs_42043 0 0 1 0 2 EMC10 chr19:50983472 5'GT 50983472 Upstream 33bp
chr5 66414532 66414532 1 + C T UCEC 66414552 + 66414532 66414572 41 CGATAGTGGGACAGCAGAAACACCAGAAACAGATGAATCAG TGATAGTGGGACAGCAGAAACACCAGAAACAGATGAATCAG < 41bp 1 0.560637756811065 1 0.802746415138245 experiment 0.87872448637787 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAST4 ENSG00000069020 CDS Human protein_coding chr5:66414552 chr5:66414532 synonymous SNV . 0 1 hm5C_associated_SNPs_42044 0 0 0 0 1 MAST4 chr5:66414510 3'AG 66414510 Downstream 23bp
chr10 71016848 71016848 1 + C T UCEC 71016829 + 71016809 71016849 41 GACCAAAGGTTTCAAGGCCACTGACTGTGAAGGGGAGGACG GACCAAAGGTTTCAAGGCCACTGACTGTGAAGGGGAGGATG < 41bp 1 0.310523537485084 1 0.0558207035064697 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71016829 chr10:71016848 synonymous SNV . 0 40 hm5C_associated_SNPs_42045 0 0 0 0 2 HKDC1 chr10:71016792 3'AG 71016792 Downstream 57bp
chr10 71016848 71016848 1 + C T UCEC 71016829 + 71016809 71016849 41 GACCAAAGGTTTCAAGGCCACTGACTGTGAAGGGGAGGACG GACCAAAGGTTTCAAGGCCACTGACTGTGAAGGGGAGGATG < 41bp 1 0.310523537485084 1 0.0558207035064697 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71016829 chr10:71016848 synonymous SNV . 0 40 hm5C_associated_SNPs_42045 0 0 0 0 2 HKDC1 chr10:71016887 5'GT 71016887 Upstream 40bp
chr1 87208029 87208029 1 + C T UCEC 87208023 + 87208003 87208043 41 ATCACCTCTCCTTCCAACCTCAGTGACCTTAAGGAGTGTAG ATCACCTCTCCTTCCAACCTCAGTGATCTTAAGGAGTGTAG < 41bp 1 0.373294765491603 1 0.18396207690239 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3GLB1 ENSG00000097033 CDS Human protein_coding chr1:87208023 chr1:87208029 synonymous SNV . 0 27 hm5C_associated_SNPs_42046 0 0 1 0 1 SH3GLB1 chr1:87208119 5'GT 87208119 Upstream 91bp
chr9 136216875 136216875 1 + T C UCEC 136216857 + 136216837 136216877 41 GGCCCGGGCCGAGAAGAAGGCTGCTGGCAAAGGGGACGTCC GGCCCGGGCCGAGAAGAAGGCTGCTGGCAAAGGGGACGCCC < 41bp 1 0.79036941860804 1 0.32801616191864 experiment 0.41926116278392 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216857 chr9:136216875 nonsynonymous SNV 0.867 0 39 hm5C_associated_SNPs_42047 0 0 1 0 1 RPL7A chr9:136216907 5'GT 136216907 Upstream 33bp
chr9 136216875 136216875 1 + T C UCEC 136216860 + 136216840 136216880 41 CCGGGCCGAGAAGAAGGCTGCTGGCAAAGGGGACGTCCCAA CCGGGCCGAGAAGAAGGCTGCTGGCAAAGGGGACGCCCCAA < 41bp 1 0.680333379058468 1 0.422688543796539 experiment 0.639333241883063 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216860 chr9:136216875 nonsynonymous SNV 0.867 0 36 hm5C_associated_SNPs_42048 0 0 1 0 1 RPL7A chr9:136216907 5'GT 136216907 Upstream 33bp
chr9 136216875 136216875 1 + T C UCEC 136216873 + 136216853 136216893 41 AAGGCTGCTGGCAAAGGGGACGTCCCAACGAAGAGACCACC AAGGCTGCTGGCAAAGGGGACGCCCCAACGAAGAGACCACC < 41bp 1 0.286908548559716 1 0.206764131784439 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216873 chr9:136216875 nonsynonymous SNV 0.867 0 23 hm5C_associated_SNPs_42049 0 0 1 0 1 RPL7A chr9:136216907 5'GT 136216907 Upstream 33bp
chr9 136216875 136216875 1 + T C UCEC 136216877 + 136216857 136216897 41 CTGCTGGCAAAGGGGACGTCCCAACGAAGAGACCACCTGTC CTGCTGGCAAAGGGGACGCCCCAACGAAGAGACCACCTGTC < 41bp 1 0.161433919928065 1 0.0574875473976135 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216877 chr9:136216875 nonsynonymous SNV 0.867 0 19 hm5C_associated_SNPs_42050 0 0 1 0 1 RPL7A chr9:136216907 5'GT 136216907 Upstream 33bp
chr9 136216875 136216875 1 + T C UCEC 136216878 + 136216858 136216898 41 TGCTGGCAAAGGGGACGTCCCAACGAAGAGACCACCTGTCC TGCTGGCAAAGGGGACGCCCCAACGAAGAGACCACCTGTCC < 41bp 1 0.729536935552709 1 0.211784243583679 experiment 0.540926128894581 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216878 chr9:136216875 nonsynonymous SNV 0.867 0 18 hm5C_associated_SNPs_42051 0 0 1 0 1 RPL7A chr9:136216907 5'GT 136216907 Upstream 33bp
chr6 31914181 31914181 1 + G A UCEC 31914162 + 31914142 31914182 41 CTCTTCAGGTGTGACCACCACTCCATGGTCTTTGGCCCGGC CTCTTCAGGTGTGACCACCACTCCATGGTCTTTGGCCCGAC < 41bp 1 0.731499797172349 1 0.985383987426758 experiment 0.537000405655302 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control CFB ENSG00000243649;ENSG00000244255 CDS Human other chr6:31914162 chr6:31914181 synonymous SNV . 0 40 hm5C_associated_SNPs_42052 0 0 1 0 1 CFB chr6:31914150 3'AG 31914150 Downstream 32bp
chr4 79420914 79420914 1 + G A UCEC 79420912 + 79420892 79420932 41 GAAGAAGCTGCATACCAAGTCCGGGAACCCGCAGGCCCAGA GAAGAAGCTGCATACCAAGTCCAGGAACCCGCAGGCCCAGA < 41bp 1 0.141355189047963 1 0.325248271226883 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79420912 chr4:79420914 nonsynonymous SNV 0.982 3 23 hm5C_associated_SNPs_42053 0 0 1 0 1 FRAS1 chr4:79420875 3'AG 79420875 Downstream 40bp
chr7 4796680 4796680 1 + C A UCEC 4796673 + 4796653 4796693 41 ACCGTTACTTTATCAAAGTCCCACGTTCCCAGGAGGAGCCT ACCGTTACTTTATCAAAGTCCCACGTTACCAGGAGGAGCCT < 41bp 1 0.0866030051298331 1 0.0443016886711121 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4796673 chr7:4796680 nonsynonymous SNV 1.000 5 28 hm5C_associated_SNPs_42054 0 0 1 0 1 FOXK1 chr7:4796625 3'AG 4796625 Downstream 56bp
chr10 131943489 131943489 1 + T C UCEC 131943482 + 131943462 131943502 41 AATTGATTTACAGGTCCCTCCTTGTGGTCCATTTCTGGGCA AATTGATTTACAGGTCCCTCCTTGTGGCCCATTTCTGGGCA < 41bp 1 0.446934074776589 1 0.24248406291008 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131943482 chr10:131943489 nonsynonymous SNV 0.996 1 28 hm5C_associated_SNPs_42056 0 0 1 1 2 GLRX3 chr10:131943475 3'AG 131943475 Downstream 15bp
chr10 131943489 131943489 1 + T C UCEC 131943482 + 131943462 131943502 41 AATTGATTTACAGGTCCCTCCTTGTGGTCCATTTCTGGGCA AATTGATTTACAGGTCCCTCCTTGTGGCCCATTTCTGGGCA < 41bp 1 0.446934074776589 1 0.24248406291008 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131943482 chr10:131943489 nonsynonymous SNV 0.996 1 28 hm5C_associated_SNPs_42056 0 0 1 1 2 GLRX3 chr10:131943583 5'GT 131943583 Upstream 95bp
chr2 85598244 85598244 1 + C T UCEC 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTTGCCGCCCTCCGACACTACCTCT < 41bp 1 0.385358254105516 1 0.240454703569412 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598244 synonymous SNV . 0 19 hm5C_associated_SNPs_42057 0 0 0 3 1 ELMOD3 chr2:85598209 3'AG 85598209 Downstream 36bp
chr2 85598244 85598244 1 + C T UCEC 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGGCTTGCCGCCCTCCGACACTACCTCTTCGGG < 41bp 1 0.701741325893278 1 0.787114262580872 experiment 0.596517348213444 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598244 synonymous SNV . 0 14 hm5C_associated_SNPs_42058 0 0 0 3 1 ELMOD3 chr2:85598209 3'AG 85598209 Downstream 36bp
chr1 236711367 236711367 1 + G A UCEC 236711377 + 236711357 236711397 41 GGCGTACACAGCCTGGAGTACAAACACAGATTTAAAGAGCT GGCGTACACAACCTGGAGTACAAACACAGATTTAAAGAGCT < 41bp 1 0.0701361915310231 1 0.14209920167923 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LGALS8 ENSG00000116977 CDS Human protein_coding chr1:236711377 chr1:236711367 nonsynonymous SNV 0.977 0 11 hm5C_associated_SNPs_42063 0 0 1 0 1 LGALS8 chr1:236711312 3'AG 236711312 Downstream 56bp
chr6 31605017 31605017 1 + C T UCEC 31605013 + 31604993 31605033 41 ACGCCCTTCTTCCCTTAGGTCCTTCTCTGGCCTCAATTCCC ACGCCCTTCTTCCCTTAGGTCCTTTTCTGGCCTCAATTCCC < 41bp 1 0.101488984524478 1 0.0397774577140808 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31605013 chr6:31605017 synonymous SNV . 0 25 hm5C_associated_SNPs_42064 0 0 1 0 2 PRRC2A chr6:31605011 3'AG 31605011 Downstream 7bp
chr6 31605017 31605017 1 + C T UCEC 31605013 + 31604993 31605033 41 ACGCCCTTCTTCCCTTAGGTCCTTCTCTGGCCTCAATTCCC ACGCCCTTCTTCCCTTAGGTCCTTTTCTGGCCTCAATTCCC < 41bp 1 0.101488984524478 1 0.0397774577140808 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31605013 chr6:31605017 synonymous SNV . 0 25 hm5C_associated_SNPs_42064 0 0 1 0 2 PRRC2A chr6:31605101 5'GT 31605101 Upstream 85bp
chr1 198233314 198233314 1 + A G UCEC 198233296 + 198233276 198233316 41 ATAAAATATTATGCATCATTCATTGAAGATAATGAACTAAA ATAAAATATTATGCATCATTCATTGAAGATAATGAACTGAA < 41bp 1 0.130961369856952 1 0.344748854637146 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233296 chr1:198233314 synonymous SNV . 0 39 hm5C_associated_SNPs_42065 0 0 1 0 2 NEK7 chr1:198233255 3'AG 198233255 Downstream 60bp
chr1 198233314 198233314 1 + A G UCEC 198233296 + 198233276 198233316 41 ATAAAATATTATGCATCATTCATTGAAGATAATGAACTAAA ATAAAATATTATGCATCATTCATTGAAGATAATGAACTGAA < 41bp 1 0.130961369856952 1 0.344748854637146 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233296 chr1:198233314 synonymous SNV . 0 39 hm5C_associated_SNPs_42065 0 0 1 0 2 NEK7 chr1:198233365 5'GT 198233365 Upstream 52bp
chr8 9564450 9564450 1 + C T UCEC 9564436 + 9564416 9564456 41 TAGCCATGGCGCTGATCCTACATTAGTCAACTGCCATGGCA TAGCCATGGCGCTGATCCTACATTAGTCAACTGCTATGGCA < 41bp 1 0.312236174025833 1 0.0221323072910309 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TNKS ENSG00000173273 CDS Human protein_coding chr8:9564436 chr8:9564450 nonsynonymous SNV 0.999 3 35 hm5C_associated_SNPs_42066 0 0 1 0 1 TNKS chr8:9564507 5'GT 9564507 Upstream 58bp
chr1 153724862 153724862 1 + G T UCEC 153724860 + 153724840 153724880 41 AAGATATTATCCATAATCCTCAGGCCTTGAGTCCTCAGTTC AAGATATTATCCATAATCCTCATGCCTTGAGTCCTCAGTTC < 41bp 1 0.411897240699626 1 0.233195573091507 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout INTS3 ENSG00000143624 CDS Human protein_coding chr1:153724860 chr1:153724862 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_42067 0 0 1 0 1 INTS3 chr1:153724884 5'GT 153724884 Upstream 23bp
chr9 100077141 100077141 1 + C T UCEC 100077158 + 100077138 100077178 41 AAGCGTGTTGAAGAAATATGCAGAAGTCATAGAGAAAACTT AAGTGTGTTGAAGAAATATGCAGAAGTCATAGAGAAAACTT < 41bp 1 0.581019232479822 1 0.487349510192871 experiment 0.837961535040356 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100077158 chr9:100077141 synonymous SNV . 0 4 hm5C_associated_SNPs_42068 0 0 0 2 2 CCDC180 chr9:100077133 3'AG 100077133 Downstream 9bp
chr9 100077141 100077141 1 + C T UCEC 100077158 + 100077138 100077178 41 AAGCGTGTTGAAGAAATATGCAGAAGTCATAGAGAAAACTT AAGTGTGTTGAAGAAATATGCAGAAGTCATAGAGAAAACTT < 41bp 1 0.581019232479822 1 0.487349510192871 experiment 0.837961535040356 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100077158 chr9:100077141 synonymous SNV . 0 4 hm5C_associated_SNPs_42068 0 0 0 2 2 CCDC180 chr9:100077228 5'GT 100077228 Upstream 88bp
chr19 11559902 11559902 1 + C A UCEC 11559894 + 11559874 11559914 41 CCCTGTGTCTCTCACAGCACCTGGGGCTCATGGATTGGCCC CCCTGTGTCTCTCACAGCACCTGGGGCTAATGGATTGGCCC < 41bp 1 0.747473496328905 1 0.733530521392822 experiment 0.505053007342191 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11559894 chr19:11559902 stopgain 0.959 0 29 hm5C_associated_SNPs_42069 0 0 1 0 2 PRKCSH chr19:11559891 3'AG 11559891 Downstream 12bp
chr19 11559902 11559902 1 + C A UCEC 11559894 + 11559874 11559914 41 CCCTGTGTCTCTCACAGCACCTGGGGCTCATGGATTGGCCC CCCTGTGTCTCTCACAGCACCTGGGGCTAATGGATTGGCCC < 41bp 1 0.747473496328905 1 0.733530521392822 experiment 0.505053007342191 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11559894 chr19:11559902 stopgain 0.959 0 29 hm5C_associated_SNPs_42069 0 0 1 0 2 PRKCSH chr19:11559990 5'GT 11559990 Upstream 89bp
chr17 38152551 38152551 1 + G A UCEC 38152535 + 38152515 38152555 41 ATTCCACCCGAGAGCCCCAGCTAGCCTTCCACCAGCGCATC ATTCCACCCGAGAGCCCCAGCTAGCCTTCCACCAGCACATC < 41bp 1 0.317531055854532 1 0.179141014814377 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38152535 chr17:38152551 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_42070 0 0 1 1 1 PSMD3 chr17:38152591 5'GT 38152591 Upstream 41bp
chr11 93530713 93530713 1 + A G UCEC 93530714 + 93530694 93530734 41 TTGTTAGTTTCATAAACAGACCTTGAGTTCCATCATGATGC TTGTTAGTTTCATAAACAGGCCTTGAGTTCCATCATGATGC < 41bp 1 0.0249761920021246 1 0.0325663089752197 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MED17 ENSG00000042429 CDS Human protein_coding chr11:93530714 chr11:93530713 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_42071 0 0 0 0 1 MED17 chr11:93530701 3'AG 93530701 Downstream 13bp
chr5 176016595 176016595 1 + G A UCEC 176016578 + 176016558 176016598 41 GCGGCTGCAGTTCTCCACACCGAAGGAGGAGGTGGGCGCCA GCGGCTGCAGTTCTCCACACCGAAGGAGGAGGTGGGCACCA < 41bp 1 0.535523417364326 1 0.781206130981445 experiment 0.928953165271348 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176016578 chr5:176016595 nonsynonymous SNV 0.036 0 38 hm5C_associated_SNPs_42072 0 0 0 0 2 CDHR2 chr5:176016529 3'AG 176016529 Downstream 67bp
chr5 176016595 176016595 1 + G A UCEC 176016578 + 176016558 176016598 41 GCGGCTGCAGTTCTCCACACCGAAGGAGGAGGTGGGCGCCA GCGGCTGCAGTTCTCCACACCGAAGGAGGAGGTGGGCACCA < 41bp 1 0.535523417364326 1 0.781206130981445 experiment 0.928953165271348 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176016578 chr5:176016595 nonsynonymous SNV 0.036 0 38 hm5C_associated_SNPs_42072 0 0 0 0 2 CDHR2 chr5:176016617 5'GT 176016617 Upstream 23bp
chr17 34001247 34001247 1 + C A UCEC 34001266 + 34001246 34001286 41 ACTCACCGCCAAGGGCACATCTATATGGAAATGAACTTCAC AATCACCGCCAAGGGCACATCTATATGGAAATGAACTTCAC < 41bp 1 0.500833985401312 1 0.674835920333862 experiment 0.998332029197375 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP2B1 ENSG00000006125 CDS Human protein_coding chr17:34001266 chr17:34001247 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_42073 0 0 1 0 2 AP2B1 chr17:34001195 3'AG 34001195 Downstream 53bp
chr17 34001247 34001247 1 + C A UCEC 34001266 + 34001246 34001286 41 ACTCACCGCCAAGGGCACATCTATATGGAAATGAACTTCAC AATCACCGCCAAGGGCACATCTATATGGAAATGAACTTCAC < 41bp 1 0.500833985401312 1 0.674835920333862 experiment 0.998332029197375 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP2B1 ENSG00000006125 CDS Human protein_coding chr17:34001266 chr17:34001247 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_42073 0 0 1 0 2 AP2B1 chr17:34001340 5'GT 34001340 Upstream 94bp
chr11 36422802 36422802 1 + C A UCEC 36422793 + 36422773 36422813 41 CCTTCCCCGATTCCAAGCAGCTCGGCAGGCTCTGCAGCTGA CCTTCCCCGATTCCAAGCAGCTCGGCAGGATCTGCAGCTGA < 41bp 1 0.65036701292971 1 0.364940822124481 experiment 0.69926597414058 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRR5L ENSG00000135362 CDS Human protein_coding chr11:36422793 chr11:36422802 nonsynonymous SNV 0.992 0 30 hm5C_associated_SNPs_42074 0 0 0 0 1 PRR5L chr11:36422835 5'GT 36422835 Upstream 34bp
chr16 72139443 72139443 1 + G A UCEC 72139447 + 72139427 72139467 41 CGTTCGGAAGTGCATCGTTGCCACCAATATTGCCGAGACGT CGTTCGGAAGTGCATCATTGCCACCAATATTGCCGAGACGT < 41bp 1 0.0793011361980715 1 0.0600351989269257 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72139447 chr16:72139443 nonsynonymous SNV 0.988 4 17 hm5C_associated_SNPs_42075 0 0 1 0 2 DHX38 chr16:72139416 3'AG 72139416 Downstream 28bp
chr16 72139443 72139443 1 + G A UCEC 72139447 + 72139427 72139467 41 CGTTCGGAAGTGCATCGTTGCCACCAATATTGCCGAGACGT CGTTCGGAAGTGCATCATTGCCACCAATATTGCCGAGACGT < 41bp 1 0.0793011361980715 1 0.0600351989269257 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72139447 chr16:72139443 nonsynonymous SNV 0.988 4 17 hm5C_associated_SNPs_42075 0 0 1 0 2 DHX38 chr16:72139523 5'GT 72139523 Upstream 81bp
chr17 48757169 48757169 1 + C A UCEC 48757176 + 48757156 48757196 41 CAGGTGACATTTGCTCTGAACTGGATGATACGAATGATGTC CAGGTGACATTTGATCTGAACTGGATGATACGAATGATGTC < 41bp 1 0.546051111712174 1 0.321776449680328 experiment 0.907897776575653 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48757176 chr17:48757169 nonsynonymous SNV 0.734 2 14 hm5C_associated_SNPs_42077 0 0 0 0 2 ABCC3 chr17:48757159 3'AG 48757159 Downstream 11bp
chr17 48757169 48757169 1 + C A UCEC 48757176 + 48757156 48757196 41 CAGGTGACATTTGCTCTGAACTGGATGATACGAATGATGTC CAGGTGACATTTGATCTGAACTGGATGATACGAATGATGTC < 41bp 1 0.546051111712174 1 0.321776449680328 experiment 0.907897776575653 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48757176 chr17:48757169 nonsynonymous SNV 0.734 2 14 hm5C_associated_SNPs_42077 0 0 0 0 2 ABCC3 chr17:48757260 5'GT 48757260 Upstream 92bp
chr2 211465341 211465341 1 + G A UCEC 211465360 + 211465340 211465380 41 AGTTGAGTCCATTATGGCTACGGAAGACAGGCAGCTGTTTT AATTGAGTCCATTATGGCTACGGAAGACAGGCAGCTGTTTT < 41bp 1 0.497363331960359 1 0.740393996238708 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPS1 ENSG00000021826 CDS Human protein_coding chr2:211465360 chr2:211465341 nonsynonymous SNV 0.997 2 2 hm5C_associated_SNPs_42079 0 0 1 0 2 CPS1 chr2:211465279 3'AG 211465279 Downstream 63bp
chr2 211465341 211465341 1 + G A UCEC 211465360 + 211465340 211465380 41 AGTTGAGTCCATTATGGCTACGGAAGACAGGCAGCTGTTTT AATTGAGTCCATTATGGCTACGGAAGACAGGCAGCTGTTTT < 41bp 1 0.497363331960359 1 0.740393996238708 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPS1 ENSG00000021826 CDS Human protein_coding chr2:211465360 chr2:211465341 nonsynonymous SNV 0.997 2 2 hm5C_associated_SNPs_42079 0 0 1 0 2 CPS1 chr2:211465436 5'GT 211465436 Upstream 96bp
chr17 46128902 46128902 1 + G A UCEC 46128901 + 46128881 46128921 41 CAGGCCCAGACAACGGGGTGCGAGAAAGCGAAACGGAGCAG CAGGCCCAGACAACGGGGTGCAAGAAAGCGAAACGGAGCAG < 41bp 1 0.629864108086518 1 0.233622461557388 experiment 0.740271783826965 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128901 chr17:46128902 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_42080 0 0 1 0 1 NFE2L1 chr17:46128990 5'GT 46128990 Upstream 89bp
chr17 46128902 46128902 1 + G A UCEC 46128909 + 46128889 46128929 41 GACAACGGGGTGCGAGAAAGCGAAACGGAGCAGGGATTCGG GACAACGGGGTGCAAGAAAGCGAAACGGAGCAGGGATTCGG < 41bp 1 0.714876007291011 1 0.660530686378479 experiment 0.570247985417979 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128909 chr17:46128902 nonsynonymous SNV 0.998 2 14 hm5C_associated_SNPs_42081 0 0 1 0 1 NFE2L1 chr17:46128990 5'GT 46128990 Upstream 89bp
chr17 46128902 46128902 1 + G A UCEC 46128914 + 46128894 46128934 41 CGGGGTGCGAGAAAGCGAAACGGAGCAGGGATTCGGTGAAG CGGGGTGCAAGAAAGCGAAACGGAGCAGGGATTCGGTGAAG < 41bp 1 0.584166687573062 1 0.834227681159973 experiment 0.831666624853876 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128914 chr17:46128902 nonsynonymous SNV 0.998 2 9 hm5C_associated_SNPs_42082 0 0 1 0 1 NFE2L1 chr17:46128990 5'GT 46128990 Upstream 89bp
chr17 46128902 46128902 1 + G A UCEC 46128919 + 46128899 46128939 41 TGCGAGAAAGCGAAACGGAGCAGGGATTCGGTGAAGATTTG TGCAAGAAAGCGAAACGGAGCAGGGATTCGGTGAAGATTTG < 41bp 1 0.643970028982942 1 0.67047107219696 experiment 0.712059942034117 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128919 chr17:46128902 nonsynonymous SNV 0.998 2 4 hm5C_associated_SNPs_42083 0 0 1 0 1 NFE2L1 chr17:46128990 5'GT 46128990 Upstream 89bp
chr9 98678707 98678707 1 + G A UCEC 98678714 + 98678694 98678734 41 AGTTGCCTAAGAAGGAAGACCGGGTAAGAACCGCATTTGTA AGTTGCCTAAGAAAGAAGACCGGGTAAGAACCGCATTTGTA < 41bp 1 0.445240662383589 1 0.51391077041626 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ERCC6L2 ENSG00000182150 CDS Human protein_coding chr9:98678714 chr9:98678707 synonymous SNV . 0 14 hm5C_associated_SNPs_42084 0 0 0 0 1 ERCC6L2 chr9:98678716 5'GT 98678716 Upstream 10bp
chr11 43908165 43908165 1 + T C UCEC 43908156 + 43908136 43908176 41 TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTGTATGAAAT TGTTTCCTTTGTTTCTTTAGCAGAGAGGGCGTGTATGAAAT < 41bp 1 0.50025803279165 1 0.545542895793915 experiment 0.9994839344167 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908156 chr11:43908165 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_42085 0 0 1 4 3 ALKBH3 chr11:43908156 3'AG 43908156 Downstream 10bp
chr11 43908165 43908165 1 + T C UCEC 43908156 + 43908136 43908176 41 TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTGTATGAAAT TGTTTCCTTTGTTTCTTTAGCAGAGAGGGCGTGTATGAAAT < 41bp 1 0.50025803279165 1 0.545542895793915 experiment 0.9994839344167 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908156 chr11:43908165 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_42085 0 0 1 4 3 ALKBH3 chr11:43908159 3'AG 43908159 Downstream 7bp
chr11 43908165 43908165 1 + T C UCEC 43908156 + 43908136 43908176 41 TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTGTATGAAAT TGTTTCCTTTGTTTCTTTAGCAGAGAGGGCGTGTATGAAAT < 41bp 1 0.50025803279165 1 0.545542895793915 experiment 0.9994839344167 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908156 chr11:43908165 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_42085 0 0 1 4 3 ALKBH3 chr11:43908203 5'GT 43908203 Upstream 39bp
chr5 153709246 153709246 1 + G A UCEC 153709248 + 153709228 153709268 41 CAGTGTGCTCAATCGCTCGCCTCCAGAGCTGGTCGCCGAGA CAGTGTGCTCAATCGCTCACCTCCAGAGCTGGTCGCCGAGA < 41bp 1 0.698260259737196 1 0.929033577442169 experiment 0.603479480525608 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153709248 chr5:153709246 synonymous SNV . 0 19 hm5C_associated_SNPs_42086 0 0 0 0 1 GALNT10 chr5:153709298 5'GT 153709298 Upstream 53bp
chr5 169127061 169127061 1 + G T UCEC 169127059 + 169127039 169127079 41 TGCTGGTGGGTGACATCATTCAGATTCGCAAGGACTATCCA TGCTGGTGGGTGACATCATTCATATTCGCAAGGACTATCCA < 41bp 1 0.18164363951445 1 0.107817590236664 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169127059 chr5:169127061 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_42087 0 0 1 0 2 DOCK2 chr5:169127018 3'AG 169127018 Downstream 44bp
chr5 169127061 169127061 1 + G T UCEC 169127059 + 169127039 169127079 41 TGCTGGTGGGTGACATCATTCAGATTCGCAAGGACTATCCA TGCTGGTGGGTGACATCATTCATATTCGCAAGGACTATCCA < 41bp 1 0.18164363951445 1 0.107817590236664 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169127059 chr5:169127061 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_42087 0 0 1 0 2 DOCK2 chr5:169127143 5'GT 169127143 Upstream 83bp
chr18 21478721 21478721 1 + G A UCEC 21478705 + 21478685 21478725 41 TTGTGTTTTGTTTCCAGAATCAGTTGCTCAACTACCGTTCT TTGTGTTTTGTTTCCAGAATCAGTTGCTCAACTACCATTCT < 41bp 1 0.0518885040627943 1 0.153181672096252 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21478705 chr18:21478721 nonsynonymous SNV 0.904 0 37 hm5C_associated_SNPs_42088 0 0 0 0 2 LAMA3 chr18:21478702 3'AG 21478702 Downstream 20bp
chr18 21478721 21478721 1 + G A UCEC 21478705 + 21478685 21478725 41 TTGTGTTTTGTTTCCAGAATCAGTTGCTCAACTACCGTTCT TTGTGTTTTGTTTCCAGAATCAGTTGCTCAACTACCATTCT < 41bp 1 0.0518885040627943 1 0.153181672096252 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21478705 chr18:21478721 nonsynonymous SNV 0.904 0 37 hm5C_associated_SNPs_42088 0 0 0 0 2 LAMA3 chr18:21478812 5'GT 21478812 Upstream 92bp
chr17 37360824 37360824 1 + C T UCEC 37360807 + 37360787 37360827 41 TGAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCAAGCGCC TGAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCAAGTGCC < 41bp 1 0.481947688967141 1 0.528961181640625 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360807 chr17:37360824 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_42089 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 47bp
chr17 37360824 37360824 1 + C T UCEC 37360808 + 37360788 37360828 41 GAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCAAGCGCCG GAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCAAGTGCCG < 41bp 1 0.738648698093211 1 0.749774396419525 experiment 0.522702603813577 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360808 chr17:37360824 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_42090 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 47bp
chr17 37360824 37360824 1 + C T UCEC 37360816 + 37360796 37360836 41 CAGGTCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGC CAGGTCTAAGACCAAGGAAGCACGCAAGTGCCGTGAAGAGC < 41bp 1 0.416736895477475 1 0.174070477485657 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360816 chr17:37360824 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_42091 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 47bp
chr17 37360824 37360824 1 + C T UCEC 37360820 + 37360800 37360840 41 TCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGCGCCT TCTAAGACCAAGGAAGCACGCAAGTGCCGTGAAGAGCGCCT < 41bp 1 0.721325843209051 1 0.619476675987244 experiment 0.557348313581897 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360820 chr17:37360824 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_42092 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 47bp
chr12 27835610 27835610 1 + G T UCEC 27835622 + 27835602 27835642 41 GGGTTGATGGTCGAATGCTACATTACATGACTGTTGTAAGT GGGTTGATTGTCGAATGCTACATTACATGACTGTTGTAAGT < 41bp 1 0.185580571078787 1 0.222742825746536 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27835622 chr12:27835610 nonsynonymous SNV 0.993 3 9 hm5C_associated_SNPs_42093 0 0 1 0 2 PPFIBP1 chr12:27835548 3'AG 27835548 Downstream 63bp
chr12 27835610 27835610 1 + G T UCEC 27835622 + 27835602 27835642 41 GGGTTGATGGTCGAATGCTACATTACATGACTGTTGTAAGT GGGTTGATTGTCGAATGCTACATTACATGACTGTTGTAAGT < 41bp 1 0.185580571078787 1 0.222742825746536 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27835622 chr12:27835610 nonsynonymous SNV 0.993 3 9 hm5C_associated_SNPs_42093 0 0 1 0 2 PPFIBP1 chr12:27835636 5'GT 27835636 Upstream 27bp
chr10 5147789 5147789 1 + T G UCEC 5147798 + 5147778 5147818 41 TTCTGATAGGTTTTTGAGTTCCAGTTGACTGCAGAGGACAT TTCTGATAGGTGTTTGAGTTCCAGTTGACTGCAGAGGACAT < 41bp 1 0.228266109220342 1 0.146257400512695 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1C3 ENSG00000196139 CDS Human protein_coding chr10:5147798 chr10:5147789 synonymous SNV . 0 12 hm5C_associated_SNPs_42094 0 0 1 0 2 AKR1C3 chr10:5147787 3'AG 5147787 Downstream 3bp
chr10 5147789 5147789 1 + T G UCEC 5147798 + 5147778 5147818 41 TTCTGATAGGTTTTTGAGTTCCAGTTGACTGCAGAGGACAT TTCTGATAGGTGTTTGAGTTCCAGTTGACTGCAGAGGACAT < 41bp 1 0.228266109220342 1 0.146257400512695 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1C3 ENSG00000196139 CDS Human protein_coding chr10:5147798 chr10:5147789 synonymous SNV . 0 12 hm5C_associated_SNPs_42094 0 0 1 0 2 AKR1C3 chr10:5147869 5'GT 5147869 Upstream 81bp
chr11 110333083 110333083 1 + G A UCEC 110333093 + 110333073 110333113 41 TACAGATCACGGTTGGGCTGCCAAATCTGTTTGACAAAATC TACAGATCACAGTTGGGCTGCCAAATCTGTTTGACAAAATC < 41bp 1 0.177528576013938 1 0.153972715139389 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FDX1 ENSG00000137714 CDS Human protein_coding chr11:110333093 chr11:110333083 nonsynonymous SNV 0.897 3 11 hm5C_associated_SNPs_42095 0 0 1 0 1 FDX1 chr11:110333078 3'AG 110333078 Downstream 6bp
chr11 110333083 110333083 1 + G A UCEC 110333094 + 110333074 110333114 41 ACAGATCACGGTTGGGCTGCCAAATCTGTTTGACAAAATCT ACAGATCACAGTTGGGCTGCCAAATCTGTTTGACAAAATCT < 41bp 1 0.191054596365523 1 0.43353483080864 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FDX1 ENSG00000137714 CDS Human protein_coding chr11:110333094 chr11:110333083 nonsynonymous SNV 0.897 3 10 hm5C_associated_SNPs_42096 0 0 1 0 1 FDX1 chr11:110333078 3'AG 110333078 Downstream 6bp
chr11 124747879 124747879 1 + C T UCEC 124747866 + 124747846 124747886 41 CCTGTATCTAGCTCAGACGGCCAGGGGCACGGCCGCCCCTG CCTGTATCTAGCTCAGACGGCCAGGGGCACGGCTGCCCCTG < 41bp 1 0.429550755656352 1 0.834459781646729 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747866 chr11:124747879 synonymous SNV . 0 34 hm5C_associated_SNPs_42097 0 0 0 0 1 ROBO3 chr11:124747833 3'AG 124747833 Downstream 47bp
chr11 124747879 124747879 1 + C T UCEC 124747867 + 124747847 124747887 41 CTGTATCTAGCTCAGACGGCCAGGGGCACGGCCGCCCCTGG CTGTATCTAGCTCAGACGGCCAGGGGCACGGCTGCCCCTGG < 41bp 1 0.681095330639162 1 0.950021505355835 experiment 0.637809338721677 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747867 chr11:124747879 synonymous SNV . 0 33 hm5C_associated_SNPs_42098 0 0 0 0 1 ROBO3 chr11:124747833 3'AG 124747833 Downstream 47bp
chr11 124747879 124747879 1 + C T UCEC 124747873 + 124747853 124747893 41 CTAGCTCAGACGGCCAGGGGCACGGCCGCCCCTGGCGAGGG CTAGCTCAGACGGCCAGGGGCACGGCTGCCCCTGGCGAGGG < 41bp 1 0.729821482007613 1 0.197549819946289 experiment 0.540357035984773 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747873 chr11:124747879 synonymous SNV . 0 27 hm5C_associated_SNPs_42099 0 0 0 0 1 ROBO3 chr11:124747833 3'AG 124747833 Downstream 47bp
chr11 124747879 124747879 1 + C T UCEC 124747881 + 124747861 124747901 41 GACGGCCAGGGGCACGGCCGCCCCTGGCGAGGGTCCTGTCT GACGGCCAGGGGCACGGCTGCCCCTGGCGAGGGTCCTGTCT < 41bp 1 0.164438038781198 1 0.110223203897476 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747881 chr11:124747879 synonymous SNV . 0 19 hm5C_associated_SNPs_42100 0 0 0 0 1 ROBO3 chr11:124747833 3'AG 124747833 Downstream 47bp
chr11 124747879 124747879 1 + C T UCEC 124747882 + 124747862 124747902 41 ACGGCCAGGGGCACGGCCGCCCCTGGCGAGGGTCCTGTCTA ACGGCCAGGGGCACGGCTGCCCCTGGCGAGGGTCCTGTCTA < 41bp 1 0.251643555282509 1 0.09859699010849 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747882 chr11:124747879 synonymous SNV . 0 18 hm5C_associated_SNPs_42101 0 0 0 0 1 ROBO3 chr11:124747833 3'AG 124747833 Downstream 47bp
chr11 124747879 124747879 1 + C T UCEC 124747883 + 124747863 124747903 41 CGGCCAGGGGCACGGCCGCCCCTGGCGAGGGTCCTGTCTAT CGGCCAGGGGCACGGCTGCCCCTGGCGAGGGTCCTGTCTAT < 41bp 1 0.282122859826565 1 0.340583354234695 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747883 chr11:124747879 synonymous SNV . 0 17 hm5C_associated_SNPs_42102 0 0 0 0 1 ROBO3 chr11:124747833 3'AG 124747833 Downstream 47bp
chr11 124747879 124747879 1 + C T UCEC 124747884 + 124747864 124747904 41 GGCCAGGGGCACGGCCGCCCCTGGCGAGGGTCCTGTCTATA GGCCAGGGGCACGGCTGCCCCTGGCGAGGGTCCTGTCTATA < 41bp 1 0.630282698513484 1 0.294700592756271 experiment 0.739434602973033 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747884 chr11:124747879 synonymous SNV . 0 16 hm5C_associated_SNPs_42103 0 0 0 0 1 ROBO3 chr11:124747833 3'AG 124747833 Downstream 47bp
chr15 41555005 41555005 1 + C T UCEC 41554985 + 41554965 41555005 41 TAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCGC TAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCGT < 41bp 1 0.237579278366877 1 0.166997134685516 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHP1 ENSG00000187446 CDS Human protein_coding chr15:41554985 chr15:41555005 synonymous SNV . 0 41 hm5C_associated_SNPs_42104 0 0 1 0 2 CHP1 chr15:41554954 3'AG 41554954 Downstream 52bp
chr15 41555005 41555005 1 + C T UCEC 41554985 + 41554965 41555005 41 TAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCGC TAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCGT < 41bp 1 0.237579278366877 1 0.166997134685516 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHP1 ENSG00000187446 CDS Human protein_coding chr15:41554985 chr15:41555005 synonymous SNV . 0 41 hm5C_associated_SNPs_42104 0 0 1 0 2 CHP1 chr15:41555081 5'GT 41555081 Upstream 77bp
chr3 47891215 47891215 1 + C T UCEC 47891200 + 47891180 47891220 41 CAGCGTCTTCGTCCGGGACTCCTCTCAGGTGCACCCGCTAG CAGCGTCTTCGTCCGGGACTCCTCTCAGGTGCACCTGCTAG < 41bp 1 0.0888043384912913 1 0.184582769870758 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DHX30 ENSG00000132153 CDS Human protein_coding chr3:47891200 chr3:47891215 nonsynonymous SNV 0.986 4 36 hm5C_associated_SNPs_42105 0 0 1 0 1 DHX30 chr3:47891259 5'GT 47891259 Upstream 45bp
chr12 104327990 104327990 1 + G A UCEC 104327970 + 104327950 104327990 41 ATTGTCACTTCAAAACACAACAACGATACCCAGCACATCTG ATTGTCACTTCAAAACACAACAACGATACCCAGCACATCTA < 41bp 1 0.468476355022858 1 0.136727899312973 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104327970 chr12:104327990 stopgain 1.000 1 41 hm5C_associated_SNPs_42106 0 0 1 0 1 HSP90B1 chr12:104328065 5'GT 104328065 Upstream 76bp
chr19 59060603 59060603 1 + T C UCEC 59060584 + 59060564 59060604 41 GAACCCCTGGTGCCCCACCCCTGGCTGGCATGGCCATTGTC GAACCCCTGGTGCCCCACCCCTGGCTGGCATGGCCATTGCC < 41bp 1 0.472618400089445 1 0.488364338874817 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59060584 chr19:59060603 nonsynonymous SNV 0.981 1 40 hm5C_associated_SNPs_42109 0 0 1 0 1 TRIM28 chr19:59060607 5'GT 59060607 Upstream 5bp
chr19 59060603 59060603 1 + T C UCEC 59060588 + 59060568 59060608 41 CCCTGGTGCCCCACCCCTGGCTGGCATGGCCATTGTCAAGG CCCTGGTGCCCCACCCCTGGCTGGCATGGCCATTGCCAAGG < 41bp 1 0.508408295488755 1 0.0379734635353088 experiment 0.983183409022491 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59060588 chr19:59060603 nonsynonymous SNV 0.981 1 36 hm5C_associated_SNPs_42110 0 0 1 0 1 TRIM28 chr19:59060607 5'GT 59060607 Upstream 5bp
chr19 59060603 59060603 1 + T C UCEC 59060592 + 59060572 59060612 41 GGTGCCCCACCCCTGGCTGGCATGGCCATTGTCAAGGTAAG GGTGCCCCACCCCTGGCTGGCATGGCCATTGCCAAGGTAAG < 41bp 1 0.163876698234841 1 0.115292102098465 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59060592 chr19:59060603 nonsynonymous SNV 0.981 1 32 hm5C_associated_SNPs_42111 0 0 1 0 1 TRIM28 chr19:59060607 5'GT 59060607 Upstream 5bp
chr19 7620632 7620632 1 + G A UCEC 7620645 + 7620625 7620665 41 GCAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGA GCAGCGGACCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGA < 41bp 1 0.239650591445894 1 0.412064582109451 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620645 chr19:7620632 nonsynonymous SNV 0.995 1 8 hm5C_associated_SNPs_42112 0 0 1 0 1 PNPLA6 chr19:7620649 5'GT 7620649 Upstream 18bp
chr19 7620632 7620632 1 + G A UCEC 7620646 + 7620626 7620666 41 CAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGAG CAGCGGACCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGAG < 41bp 1 0.486198993263917 1 0.721481084823608 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620646 chr19:7620632 nonsynonymous SNV 0.995 1 7 hm5C_associated_SNPs_42113 0 0 1 0 1 PNPLA6 chr19:7620649 5'GT 7620649 Upstream 18bp
chrX 17705968 17705968 1 + G T UCEC 17705955 + 17705935 17705975 41 CTTCCTCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGC CTTCCTCCCAGCCACAAGGCCACCCTGCGTGGATGAGCTGC < 41bp 1 0.351147361391508 1 0.0664248466491699 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NHS ENSG00000188158 CDS Human protein_coding chrX:17705955 chrX:17705968 nonsynonymous SNV 0.999 4 34 hm5C_associated_SNPs_42114 0 0 0 0 1 NHS chrX:17706014 5'GT 17706014 Upstream 47bp
chrX 17705968 17705968 1 + G T UCEC 17705959 + 17705939 17705979 41 CTCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGCACCG CTCCCAGCCACAAGGCCACCCTGCGTGGATGAGCTGCACCG < 41bp 1 0.702173305922259 1 0.750606775283813 experiment 0.595653388155483 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NHS ENSG00000188158 CDS Human protein_coding chrX:17705959 chrX:17705968 nonsynonymous SNV 0.999 4 30 hm5C_associated_SNPs_42115 0 0 0 0 1 NHS chrX:17706014 5'GT 17706014 Upstream 47bp
chrX 135593004 135593004 1 + G T UCEC 135593020 + 135593000 135593040 41 CTGAGAGGATGGGAGGCTTTCCTCAATGCTCCTGAGGCCAA CTGATAGGATGGGAGGCTTTCCTCAATGCTCCTGAGGCCAA < 41bp 1 0.486245514706849 1 0.384057372808456 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135593020 chrX:135593004 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_42116 0 0 1 0 1 HTATSF1 chrX:135592967 3'AG 135592967 Downstream 38bp
chr6 44116555 44116555 1 + T G UCEC 44116536 + 44116516 44116556 41 CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTCATC CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTCAGC < 41bp 1 0.0932623862785064 1 0.484518468379974 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116536 chr6:44116555 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_42117 0 0 1 3 1 TMEM63B chr6:44116529 3'AG 44116529 Downstream 27bp
chr2 220072116 220072116 1 + G A UCEC 220072099 + 220072079 220072119 41 CAGGCATCTTCTGCGCAGACCATGTGGCCTACGCCCAGCAT CAGGCATCTTCTGCGCAGACCATGTGGCCTACGCCCAACAT < 41bp 1 0.336562606311716 1 0.123378992080688 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFAND2B ENSG00000158552 CDS Human protein_coding chr2:220072099 chr2:220072116 synonymous SNV . 0 38 hm5C_associated_SNPs_42118 0 0 1 0 2 ZFAND2B chr2:220072049 3'AG 220072049 Downstream 68bp
chr2 220072116 220072116 1 + G A UCEC 220072099 + 220072079 220072119 41 CAGGCATCTTCTGCGCAGACCATGTGGCCTACGCCCAGCAT CAGGCATCTTCTGCGCAGACCATGTGGCCTACGCCCAACAT < 41bp 1 0.336562606311716 1 0.123378992080688 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFAND2B ENSG00000158552 CDS Human protein_coding chr2:220072099 chr2:220072116 synonymous SNV . 0 38 hm5C_associated_SNPs_42118 0 0 1 0 2 ZFAND2B chr2:220072143 5'GT 220072143 Upstream 28bp
chr14 94512160 94512160 1 + G A UCEC 94512166 + 94512146 94512186 41 TACGTGGACGAGATGGATACCGCCCTGAACCACCACGTGTT TACGTGGACGAGATAGATACCGCCCTGAACCACCACGTGTT < 41bp 1 0.503458391080102 1 0.218442350625992 experiment 0.993083217839796 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OTUB2 ENSG00000089723 CDS Human protein_coding chr14:94512166 chr14:94512160 nonsynonymous SNV 0.991 1 15 hm5C_associated_SNPs_42119 0 0 0 0 1 OTUB2 chr14:94512062 3'AG 94512062 Downstream 99bp
chr15 44085917 44085917 1 + G T UCEC 44085898 + 44085878 44085918 41 CTCCCAGTGCCCCATCATCTCTACCCCCAGGGACTCGGAGA CTCCCAGTGCCCCATCATCTCTACCCCCAGGGACTCGGATA < 41bp 1 0.297185258061274 1 0.0395390093326569 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SERF2 ENSG00000140264 CDS Human protein_coding chr15:44085898 chr15:44085917 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_42120 0 0 1 0 2 SERF2 chr15:44085885 3'AG 44085885 Downstream 33bp
chr15 44085917 44085917 1 + G T UCEC 44085898 + 44085878 44085918 41 CTCCCAGTGCCCCATCATCTCTACCCCCAGGGACTCGGAGA CTCCCAGTGCCCCATCATCTCTACCCCCAGGGACTCGGATA < 41bp 1 0.297185258061274 1 0.0395390093326569 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SERF2 ENSG00000140264 CDS Human protein_coding chr15:44085898 chr15:44085917 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_42120 0 0 1 0 2 SERF2 chr15:44085908 3'AG 44085908 Downstream 10bp
chr15 44085917 44085917 1 + G T UCEC 44085902 + 44085882 44085922 41 CAGTGCCCCATCATCTCTACCCCCAGGGACTCGGAGATCAT CAGTGCCCCATCATCTCTACCCCCAGGGACTCGGATATCAT < 41bp 1 0.295758904939107 1 0.0997720658779144 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SERF2 ENSG00000140264 CDS Human protein_coding chr15:44085902 chr15:44085917 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_42121 0 0 1 0 2 SERF2 chr15:44085885 3'AG 44085885 Downstream 33bp
chr15 44085917 44085917 1 + G T UCEC 44085902 + 44085882 44085922 41 CAGTGCCCCATCATCTCTACCCCCAGGGACTCGGAGATCAT CAGTGCCCCATCATCTCTACCCCCAGGGACTCGGATATCAT < 41bp 1 0.295758904939107 1 0.0997720658779144 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SERF2 ENSG00000140264 CDS Human protein_coding chr15:44085902 chr15:44085917 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_42121 0 0 1 0 2 SERF2 chr15:44085908 3'AG 44085908 Downstream 10bp
chr4 128811314 128811314 1 + C T UCEC 128811297 + 128811277 128811317 41 GACTAGGGGTATGGAGCCACCATGGGGTTATCAGAATCGTA GACTAGGGGTATGGAGCCACCATGGGGTTATCAGAATTGTA < 41bp 1 0.625036591997679 1 0.273236632347107 experiment 0.749926816004641 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLK4 ENSG00000142731 CDS Human protein_coding chr4:128811297 chr4:128811314 nonsynonymous SNV 0.938 0 38 hm5C_associated_SNPs_42122 0 0 1 0 1 PLK4 chr4:128811391 5'GT 128811391 Upstream 78bp
chr19 15222219 15222219 1 + G T UCEC 15222222 + 15222202 15222242 41 GCGGTCTGCCTATCTGAGGACCTGTACCCCGATATCAATGT GCGGTCTGCCTATCTGATGACCTGTACCCCGATATCAATGT < 41bp 1 0.0750753270154737 1 0.0182059109210968 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15222222 chr19:15222219 nonsynonymous SNV 0.999 4 18 hm5C_associated_SNPs_42124 0 0 0 0 2 SYDE1 chr19:15222124 3'AG 15222124 Downstream 96bp
chr19 15222219 15222219 1 + G T UCEC 15222222 + 15222202 15222242 41 GCGGTCTGCCTATCTGAGGACCTGTACCCCGATATCAATGT GCGGTCTGCCTATCTGATGACCTGTACCCCGATATCAATGT < 41bp 1 0.0750753270154737 1 0.0182059109210968 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15222222 chr19:15222219 nonsynonymous SNV 0.999 4 18 hm5C_associated_SNPs_42124 0 0 0 0 2 SYDE1 chr19:15222250 5'GT 15222250 Upstream 32bp
chr2 113325662 113325662 1 + C A UCEC 113325644 + 113325624 113325664 41 ATTGTTCCTTTTTACCACTCCTTGTAGACTGGTACGGCCTG ATTGTTCCTTTTTACCACTCCTTGTAGACTGGTACGGCATG < 41bp 1 0.155910605197326 1 0.117488980293274 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113325644 chr2:113325662 nonsynonymous SNV 0.997 5 39 hm5C_associated_SNPs_42125 0 0 1 0 1 POLR1B chr2:113325714 5'GT 113325714 Upstream 53bp
chr16 72139465 72139465 1 + C T UCEC 72139447 + 72139427 72139467 41 CGTTCGGAAGTGCATCGTTGCCACCAATATTGCCGAGACGT CGTTCGGAAGTGCATCGTTGCCACCAATATTGCCGAGATGT < 41bp 1 0.0571973127763596 1 0.0538067519664764 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72139447 chr16:72139465 nonsynonymous SNV 0.972 4 39 hm5C_associated_SNPs_42126 0 0 1 0 2 DHX38 chr16:72139416 3'AG 72139416 Downstream 50bp
chr16 72139465 72139465 1 + C T UCEC 72139447 + 72139427 72139467 41 CGTTCGGAAGTGCATCGTTGCCACCAATATTGCCGAGACGT CGTTCGGAAGTGCATCGTTGCCACCAATATTGCCGAGATGT < 41bp 1 0.0571973127763596 1 0.0538067519664764 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72139447 chr16:72139465 nonsynonymous SNV 0.972 4 39 hm5C_associated_SNPs_42126 0 0 1 0 2 DHX38 chr16:72139523 5'GT 72139523 Upstream 59bp
chr1 10239548 10239548 1 + C A UCEC 10239562 + 10239542 10239582 41 ATCATCCTGCGGCACCTGCTCAACTCCCCCACGGACCCCTT ATCATCATGCGGCACCTGCTCAACTCCCCCACGGACCCCTT < 41bp 1 0.491366156981004 1 0.342719674110413 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10239562 chr1:10239548 nonsynonymous SNV 0.997 3 7 hm5C_associated_SNPs_42127 0 0 1 0 2 UBE4B chr1:10239474 3'AG 10239474 Downstream 75bp
chr1 10239548 10239548 1 + C A UCEC 10239562 + 10239542 10239582 41 ATCATCCTGCGGCACCTGCTCAACTCCCCCACGGACCCCTT ATCATCATGCGGCACCTGCTCAACTCCCCCACGGACCCCTT < 41bp 1 0.491366156981004 1 0.342719674110413 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10239562 chr1:10239548 nonsynonymous SNV 0.997 3 7 hm5C_associated_SNPs_42127 0 0 1 0 2 UBE4B chr1:10239620 5'GT 10239620 Upstream 73bp
chr10 75526829 75526829 1 + G A UCEC 75526835 + 75526815 75526855 41 GCTGAGTGTGCAGGGAAGCTCTTTCTATTCCATACATCCCT GCTGAGTGTGCAGGAAAGCTCTTTCTATTCCATACATCCCT < 41bp 1 0.116424123438721 1 0.0887628495693207 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75526835 chr10:75526829 synonymous SNV . 0 15 hm5C_associated_SNPs_42129 0 0 1 0 2 SEC24C chr10:75526812 3'AG 75526812 Downstream 18bp
chr10 75526829 75526829 1 + G A UCEC 75526835 + 75526815 75526855 41 GCTGAGTGTGCAGGGAAGCTCTTTCTATTCCATACATCCCT GCTGAGTGTGCAGGAAAGCTCTTTCTATTCCATACATCCCT < 41bp 1 0.116424123438721 1 0.0887628495693207 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75526835 chr10:75526829 synonymous SNV . 0 15 hm5C_associated_SNPs_42129 0 0 1 0 2 SEC24C chr10:75526928 5'GT 75526928 Upstream 100bp
chr10 75526829 75526829 1 + G A UCEC 75526839 + 75526819 75526859 41 AGTGTGCAGGGAAGCTCTTTCTATTCCATACATCCCTGCCC AGTGTGCAGGAAAGCTCTTTCTATTCCATACATCCCTGCCC < 41bp 1 0.308136071381884 1 0.18769234418869 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75526839 chr10:75526829 synonymous SNV . 0 11 hm5C_associated_SNPs_42130 0 0 1 0 2 SEC24C chr10:75526812 3'AG 75526812 Downstream 18bp
chr10 75526829 75526829 1 + G A UCEC 75526839 + 75526819 75526859 41 AGTGTGCAGGGAAGCTCTTTCTATTCCATACATCCCTGCCC AGTGTGCAGGAAAGCTCTTTCTATTCCATACATCCCTGCCC < 41bp 1 0.308136071381884 1 0.18769234418869 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75526839 chr10:75526829 synonymous SNV . 0 11 hm5C_associated_SNPs_42130 0 0 1 0 2 SEC24C chr10:75526928 5'GT 75526928 Upstream 100bp
chr5 33461363 33461363 1 + T G UCEC 33461353 + 33461333 33461373 41 AACTAAACCTTTCTACTCGCCCGGAAAAATTCCTTGGAGAT AACTAAACCTTTCTACTCGCCCGGAAAAATGCCTTGGAGAT < 41bp 1 0.455416220631318 1 0.199837535619736 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33461353 chr5:33461363 nonsynonymous SNV 0.999 4 31 hm5C_associated_SNPs_42131 0 0 1 0 1 TARS chr5:33461400 5'GT 33461400 Upstream 38bp
chr6 25450209 25450209 1 + A G UCEC 25450192 + 25450172 25450212 41 AGTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAGCA AGTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGGGCA < 41bp 1 0.452861048695046 1 0.423143029212952 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25450192 chr6:25450209 nonsynonymous SNV 0.994 2 38 hm5C_associated_SNPs_42132 0 0 0 0 2 CARMIL1 chr6:25450126 3'AG 25450126 Downstream 84bp
chr6 25450209 25450209 1 + A G UCEC 25450192 + 25450172 25450212 41 AGTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAGCA AGTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGGGCA < 41bp 1 0.452861048695046 1 0.423143029212952 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25450192 chr6:25450209 nonsynonymous SNV 0.994 2 38 hm5C_associated_SNPs_42132 0 0 0 0 2 CARMIL1 chr6:25450223 5'GT 25450223 Upstream 15bp
chr10 24816977 24816977 1 + A C UCEC 24816988 + 24816968 24817008 41 CAATACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTG CAATACCAACTCTGGAGATGCCGCCAGCCACAGGCCCACTG < 41bp 1 0.170102322113653 1 0.212923467159271 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816988 chr10:24816977 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_42136 0 0 1 0 1 KIAA1217 chr10:24817048 5'GT 24817048 Upstream 72bp
chr10 24816977 24816977 1 + A C UCEC 24816992 + 24816972 24817012 41 ACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTGCCAA ACCAACTCTGGAGATGCCGCCAGCCACAGGCCCACTGCCAA < 41bp 1 0.21599866929249 1 0.770004034042358 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816992 chr10:24816977 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_42137 0 0 1 0 1 KIAA1217 chr10:24817048 5'GT 24817048 Upstream 72bp
chr4 144390265 144390265 1 + C A UCEC 144390263 + 144390243 144390283 41 TGACCAACAGAAGACCTTGGCTCTAAAGAGTACCCGGGAAG TGACCAACAGAAGACCTTGGCTATAAAGAGTACCCGGGAAG < 41bp 1 0.512501762267829 1 0.298177152872086 experiment 0.974996475464342 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control GAB1 ENSG00000109458 CDS Human protein_coding chr4:144390263 chr4:144390265 nonsynonymous SNV 0.953 4 23 hm5C_associated_SNPs_42138 0 0 0 0 1 GAB1 chr4:144390184 3'AG 144390184 Downstream 82bp
chr6 25551242 25551242 1 + T G UCEC 25551227 + 25551207 25551247 41 CGACAAGACTTGATTCATGCCAGCACCGAAAAGATTTCTAT CGACAAGACTTGATTCATGCCAGCACCGAAAAGATGTCTAT < 41bp 1 0.476167365694042 1 0.42942225933075 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25551227 chr6:25551242 nonsynonymous SNV 0.997 1 36 hm5C_associated_SNPs_42139 0 0 0 0 1 CARMIL1 chr6:25551313 5'GT 25551313 Upstream 72bp
chr5 162905764 162905764 1 + G A UCEC 162905772 + 162905752 162905792 41 AAAAGTATGACAGTATGGTGCAAAGCCTTGAAGATGTTACT AAAAGTATGACAATATGGTGCAAAGCCTTGAAGATGTTACT < 41bp 1 0.259690932598672 1 0.175862610340118 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HMMR ENSG00000072571 CDS Human protein_coding chr5:162905772 chr5:162905764 nonsynonymous SNV 0.000 0 13 hm5C_associated_SNPs_42141 0 0 1 0 2 HMMR chr5:162905690 3'AG 162905690 Downstream 75bp
chr5 162905764 162905764 1 + G A UCEC 162905772 + 162905752 162905792 41 AAAAGTATGACAGTATGGTGCAAAGCCTTGAAGATGTTACT AAAAGTATGACAATATGGTGCAAAGCCTTGAAGATGTTACT < 41bp 1 0.259690932598672 1 0.175862610340118 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HMMR ENSG00000072571 CDS Human protein_coding chr5:162905772 chr5:162905764 nonsynonymous SNV 0.000 0 13 hm5C_associated_SNPs_42141 0 0 1 0 2 HMMR chr5:162905806 5'GT 162905806 Upstream 43bp
chr4 57891057 57891057 1 + G A UCEC 57891056 + 57891036 57891076 41 CTTTTTTTTTTAAAAGGTATCGGCTAACAAGGGTGAAATTG CTTTTTTTTTTAAAAGGTATCAGCTAACAAGGGTGAAATTG < 41bp 1 0.347661779312392 1 0.350962907075882 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57891056 chr4:57891057 synonymous SNV . 0 22 hm5C_associated_SNPs_42143 0 0 0 0 1 POLR2B chr4:57891052 3'AG 57891052 Downstream 6bp
chr2 178378625 178378625 1 + T G UCEC 178378621 + 178378601 178378641 41 GAAGGGTGTTCAGTTTGCTCCTTTTTCTACATGCAGGTAAG GAAGGGTGTTCAGTTTGCTCCTTTGTCTACATGCAGGTAAG < 41bp 1 0.064305005051175 1 0.128764569759369 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGPS ENSG00000018510 CDS Human protein_coding chr2:178378621 chr2:178378625 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_42144 0 0 1 0 1 AGPS chr2:178378636 5'GT 178378636 Upstream 12bp
chr17 41345581 41345581 1 + G A UCEC 41345576 + 41345556 41345596 41 TATCATAGTAGATCCTTTCCCCTCCGAAGAGAGCCCTGATA TATCATAGTAGATCCTTTCCCCTCCAAAGAGAGCCCTGATA < 41bp 1 0.110479846518467 1 0.242188572883606 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41345576 chr17:41345581 nonsynonymous SNV 0.126 0 26 hm5C_associated_SNPs_42145 0 0 1 0 1 NBR1 chr17:41345655 5'GT 41345655 Upstream 75bp
chr19 16962315 16962315 1 + G A UCEC 16962301 + 16962281 16962321 41 CCCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCGCTCCTC CCCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCACTCCTC < 41bp 1 0.27212428579769 1 0.29907900094986 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIN3B ENSG00000127511 CDS Human protein_coding chr19:16962301 chr19:16962315 synonymous SNV . 0 35 hm5C_associated_SNPs_42148 0 0 0 0 2 SIN3B chr19:16962223 3'AG 16962223 Downstream 93bp
chr19 16962315 16962315 1 + G A UCEC 16962301 + 16962281 16962321 41 CCCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCGCTCCTC CCCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCACTCCTC < 41bp 1 0.27212428579769 1 0.29907900094986 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIN3B ENSG00000127511 CDS Human protein_coding chr19:16962301 chr19:16962315 synonymous SNV . 0 35 hm5C_associated_SNPs_42148 0 0 0 0 2 SIN3B chr19:16962345 5'GT 16962345 Upstream 31bp
chr2 27438235 27438235 1 + C A UCEC 27438244 + 27438224 27438264 41 GTCCAAACTTTCATCAGGCACATACCACTGTCATCATGTAA GTCCAAACTTTAATCAGGCACATACCACTGTCATCATGTAA < 41bp 1 0.0470882954479984 1 0.0832727253437042 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATRAID ENSG00000138085 CDS Human protein_coding chr2:27438244 chr2:27438235 nonsynonymous SNV 0.508 0 12 hm5C_associated_SNPs_42149 0 0 1 0 2 ATRAID chr2:27438189 3'AG 27438189 Downstream 47bp
chr2 27438235 27438235 1 + C A UCEC 27438244 + 27438224 27438264 41 GTCCAAACTTTCATCAGGCACATACCACTGTCATCATGTAA GTCCAAACTTTAATCAGGCACATACCACTGTCATCATGTAA < 41bp 1 0.0470882954479984 1 0.0832727253437042 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATRAID ENSG00000138085 CDS Human protein_coding chr2:27438244 chr2:27438235 nonsynonymous SNV 0.508 0 12 hm5C_associated_SNPs_42149 0 0 1 0 2 ATRAID chr2:27438260 5'GT 27438260 Upstream 26bp
chr1 44087623 44087623 1 + C T UCEC 44087609 + 44087589 44087629 41 GCCCCCTATCCTGGCAGGACCAGTATCAGCTGTGCTACCGT GCCCCCTATCCTGGCAGGACCAGTATCAGCTGTGTTACCGT < 41bp 1 0.34037300708931 1 0.273751139640808 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44087609 chr1:44087623 synonymous SNV . 0 35 hm5C_associated_SNPs_42150 0 0 1 0 1 PTPRF chr1:44087606 3'AG 44087606 Downstream 18bp
chr19 44732659 44732659 1 + G A UCEC 44732653 + 44732633 44732673 41 TCTCCAGGGAGGAACTGCGACTGCTCGATCTTACCCAGAGG TCTCCAGGGAGGAACTGCGACTGCTCAATCTTACCCAGAGG < 41bp 1 0.64295359412612 1 0.419205486774445 experiment 0.714092811747761 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF227 ENSG00000131115 CDS Human protein_coding chr19:44732653 chr19:44732659 nonsynonymous SNV 0.318 3 27 hm5C_associated_SNPs_42151 0 0 1 0 3 ZNF227 chr19:44732599 3'AG 44732599 Downstream 61bp
chr19 44732659 44732659 1 + G A UCEC 44732653 + 44732633 44732673 41 TCTCCAGGGAGGAACTGCGACTGCTCGATCTTACCCAGAGG TCTCCAGGGAGGAACTGCGACTGCTCAATCTTACCCAGAGG < 41bp 1 0.64295359412612 1 0.419205486774445 experiment 0.714092811747761 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF227 ENSG00000131115 CDS Human protein_coding chr19:44732653 chr19:44732659 nonsynonymous SNV 0.318 3 27 hm5C_associated_SNPs_42151 0 0 1 0 3 ZNF227 chr19:44732640 3'AG 44732640 Downstream 20bp
chr19 44732659 44732659 1 + G A UCEC 44732653 + 44732633 44732673 41 TCTCCAGGGAGGAACTGCGACTGCTCGATCTTACCCAGAGG TCTCCAGGGAGGAACTGCGACTGCTCAATCTTACCCAGAGG < 41bp 1 0.64295359412612 1 0.419205486774445 experiment 0.714092811747761 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF227 ENSG00000131115 CDS Human protein_coding chr19:44732653 chr19:44732659 nonsynonymous SNV 0.318 3 27 hm5C_associated_SNPs_42151 0 0 1 0 3 ZNF227 chr19:44732725 5'GT 44732725 Upstream 67bp
chr10 45486405 45486405 1 + A C UCEC 45486398 + 45486378 45486418 41 AACCACCTTCTTTTTCAGAGCGGACAAAATTAAAAGACTGC AACCACCTTCTTTTTCAGAGCGGACAACATTAAAAGACTGC < 41bp 1 0.068174993335691 1 0.352331697940826 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45486398 chr10:45486405 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_42152 0 0 1 0 1 RASSF4 chr10:45486396 3'AG 45486396 Downstream 10bp
chr7 142460307 142460307 1 + C T UCEC 142460289 + 142460269 142460309 41 CTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCT CTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGTCT < 41bp 1 0.11933823966708 1 0.178094238042831 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460289 chr7:142460307 synonymous SNV . 0 39 hm5C_associated_SNPs_42153 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 26bp
chr7 142460307 142460307 1 + C T UCEC 142460290 + 142460270 142460310 41 TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTG TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGTCTG < 41bp 1 0.375046647998246 1 0.27952367067337 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460290 chr7:142460307 synonymous SNV . 0 38 hm5C_associated_SNPs_42154 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 26bp
chr7 142460307 142460307 1 + C T UCEC 142460291 + 142460271 142460311 41 GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGG GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGTCTGG < 41bp 1 0.401513148203527 1 0.298834800720215 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460291 chr7:142460307 synonymous SNV . 0 37 hm5C_associated_SNPs_42155 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 26bp
chr7 142460307 142460307 1 + C T UCEC 142460295 + 142460275 142460315 41 CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGC CTCACAGCCGACTACCCAGACGAGCTGCAGTGTCTGGATGC < 41bp 1 0.382502128922309 1 0.151485085487366 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460295 chr7:142460307 synonymous SNV . 0 33 hm5C_associated_SNPs_42156 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 26bp
chr7 142460307 142460307 1 + C T UCEC 142460299 + 142460279 142460319 41 CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT CAGCCGACTACCCAGACGAGCTGCAGTGTCTGGATGCTCCT < 41bp 1 0.66010175000017 1 0.128994286060333 experiment 0.67979649999966 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460299 chr7:142460307 synonymous SNV . 0 29 hm5C_associated_SNPs_42157 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 26bp
chr7 142460307 142460307 1 + C T UCEC 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGACGAGCTGCAGTGTCTGGATGCTCCTGTG < 41bp 1 0.344743898283415 1 0.200584471225739 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460307 synonymous SNV . 0 26 hm5C_associated_SNPs_42158 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 26bp
chr7 142460307 142460307 1 + C T UCEC 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGTCTGGATGCTCCTGTGCTGAGCCAGGCTA < 41bp 1 0.428833777687801 1 0.110015243291855 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460307 synonymous SNV . 0 13 hm5C_associated_SNPs_42159 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 26bp
chr7 142460307 142460307 1 + C T UCEC 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGTCTGGATGCTCCTGTGCTGAGCCAGGCTAAG < 41bp 1 0.214553152779804 1 0.388782292604446 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460307 synonymous SNV . 0 11 hm5C_associated_SNPs_42160 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 26bp
chr7 142460307 142460307 1 + C T UCEC 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGTCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT < 41bp 1 0.482719666773831 1 0.34614971280098 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460307 synonymous SNV . 0 10 hm5C_associated_SNPs_42161 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 26bp
chr7 142460307 142460307 1 + C T UCEC 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGTCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA < 41bp 1 0.472384432002304 1 0.0677043795585632 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460307 synonymous SNV . 0 5 hm5C_associated_SNPs_42162 0 0 0 0 1 PRSS1 chr7:142460282 3'AG 142460282 Downstream 26bp
chr15 99460067 99460067 1 + C A UCEC 99460083 + 99460063 99460103 41 AAGTCTTTGAGAATTTCCTGCACAACTCCATCTTCGTGCCC AAGTATTTGAGAATTTCCTGCACAACTCCATCTTCGTGCCC < 41bp 1 0.259668454822094 1 0.129899263381958 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF1R ENSG00000140443 CDS Human protein_coding chr15:99460083 chr15:99460067 synonymous SNV . 0 5 hm5C_associated_SNPs_42163 0 0 0 0 1 IGF1R chr15:99460105 5'GT 99460105 Upstream 39bp
chr1 118499759 118499759 1 + A C UCEC 118499775 + 118499755 118499795 41 AACGAATTCATTCAGCTGGGCTCTGATGTTGAACTTATATG AACGCATTCATTCAGCTGGGCTCTGATGTTGAACTTATATG < 41bp 1 0.145097441034538 1 0.0528576970100403 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR3 ENSG00000065183 CDS Human protein_coding chr1:118499775 chr1:118499759 nonsynonymous SNV 0.749 0 5 hm5C_associated_SNPs_42164 0 0 1 0 2 WDR3 chr1:118499691 3'AG 118499691 Downstream 69bp
chr1 118499759 118499759 1 + A C UCEC 118499775 + 118499755 118499795 41 AACGAATTCATTCAGCTGGGCTCTGATGTTGAACTTATATG AACGCATTCATTCAGCTGGGCTCTGATGTTGAACTTATATG < 41bp 1 0.145097441034538 1 0.0528576970100403 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR3 ENSG00000065183 CDS Human protein_coding chr1:118499775 chr1:118499759 nonsynonymous SNV 0.749 0 5 hm5C_associated_SNPs_42164 0 0 1 0 2 WDR3 chr1:118499819 5'GT 118499819 Upstream 61bp
chr19 7604936 7604936 1 + G T UCEC 7604931 + 7604911 7604951 41 CCTCTGAAGTGCTTTATATGCTCAAGAACGTCCGGTCAGTG CCTCTGAAGTGCTTTATATGCTCAATAACGTCCGGTCAGTG < 41bp 1 0.653646372848253 1 0.587534308433533 experiment 0.692707254303494 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7604931 chr19:7604936 nonsynonymous SNV 0.998 4 26 hm5C_associated_SNPs_42165 0 0 1 0 2 PNPLA6 chr19:7604944 5'GT 7604944 Upstream 9bp
chr19 7604936 7604936 1 + G T UCEC 7604931 + 7604911 7604951 41 CCTCTGAAGTGCTTTATATGCTCAAGAACGTCCGGTCAGTG CCTCTGAAGTGCTTTATATGCTCAATAACGTCCGGTCAGTG < 41bp 1 0.653646372848253 1 0.587534308433533 experiment 0.692707254303494 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7604931 chr19:7604936 nonsynonymous SNV 0.998 4 26 hm5C_associated_SNPs_42165 0 0 1 0 2 PNPLA6 chr19:7605035 5'GT 7605035 Upstream 100bp
chrX 70344188 70344188 1 + G A UCEC 70344193 + 70344173 70344213 41 TTTGATGATCCTGCCGATGACCCAGAGCACAAGGAGGCTGA TTTGATGATCCTGCCAATGACCCAGAGCACAAGGAGGCTGA < 41bp 1 0.332704701686871 1 0.0526464581489563 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70344193 chrX:70344188 nonsynonymous SNV 0.920 2 16 hm5C_associated_SNPs_42166 0 0 1 0 1 MED12 chrX:70344238 5'GT 70344238 Upstream 51bp
chr20 36662483 36662483 1 + A G UCEC 36662465 + 36662445 36662485 41 CCACCGCAAGCACGCGGGACCCATCGTCTCCGTGTGGCACC CCACCGCAAGCACGCGGGACCCATCGTCTCCGTGTGGCGCC < 41bp 1 0.175090812502842 1 0.0379385650157928 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPRD1B ENSG00000101413 CDS Human protein_coding chr20:36662465 chr20:36662483 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_42167 0 0 1 0 1 RPRD1B chr20:36662500 5'GT 36662500 Upstream 18bp
chr17 66033533 66033533 1 + C G UCEC 66033520 + 66033500 66033540 41 CAATGTGGAGCTGAGGAAAGCTAAGAAGGATGACCAGATGC CAATGTGGAGCTGAGGAAAGCTAAGAAGGATGAGCAGATGC < 41bp 1 0.563861311071983 1 0.154534250497818 experiment 0.872277377856034 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033520 chr17:66033533 nonsynonymous SNV 0.895 0 34 hm5C_associated_SNPs_42168 0 0 1 0 2 KPNA2 chr17:66033474 3'AG 66033474 Downstream 60bp
chr17 66033533 66033533 1 + C G UCEC 66033520 + 66033500 66033540 41 CAATGTGGAGCTGAGGAAAGCTAAGAAGGATGACCAGATGC CAATGTGGAGCTGAGGAAAGCTAAGAAGGATGAGCAGATGC < 41bp 1 0.563861311071983 1 0.154534250497818 experiment 0.872277377856034 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033520 chr17:66033533 nonsynonymous SNV 0.895 0 34 hm5C_associated_SNPs_42168 0 0 1 0 2 KPNA2 chr17:66033611 5'GT 66033611 Upstream 79bp
chr2 44021752 44021752 1 + G T UCEC 44021747 + 44021727 44021767 41 AAGCAGTTTCTGAAATGAGACAGAAGATCTGGAATAATATG AAGCAGTTTCTGAAATGAGACAGAATATCTGGAATAATATG < 41bp 1 0.759312982253297 1 0.230525970458984 experiment 0.481374035493406 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DYNC2LI1 ENSG00000138036 CDS Human protein_coding chr2:44021747 chr2:44021752 nonsynonymous SNV 0.980 1 26 hm5C_associated_SNPs_42169 0 0 1 0 1 DYNC2LI1 chr2:44021782 5'GT 44021782 Upstream 31bp
chr6 26093184 26093184 1 + C T UCEC 26093171 + 26093151 26093191 41 GCACCCAGGCCTGGATCAGCCCCTCATTGTGATCTGGGGTA GCACCCAGGCCTGGATCAGCCCCTCATTGTGATTTGGGGTA < 41bp 1 0.17867953780413 1 0.0446358621120453 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26093171 chr6:26093184 synonymous SNV . 0 34 hm5C_associated_SNPs_42170 0 0 1 0 1 HFE chr6:26093188 5'GT 26093188 Upstream 5bp
chr3 184038422 184038422 1 + G A UCEC 184038413 + 184038393 184038433 41 TCATCTTATAGCTTTCTTTCCCCAGATCCGAATTCGAGATC TCATCTTATAGCTTTCTTTCCCCAGATCCAAATTCGAGATC < 41bp 1 0.141098410122499 1 0.19976469874382 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184038413 chr3:184038422 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_42173 0 0 1 0 1 EIF4G1 chr3:184038418 3'AG 184038418 Downstream 5bp
chr9 125143655 125143655 1 + A G UCEC 125143665 + 125143645 125143685 41 ACCAGGGAAGAAGCAGTTGCCAGATGCCCAGCTCCTGGCCC ACCAGGGAAGGAGCAGTTGCCAGATGCCCAGCTCCTGGCCC < 41bp 1 0.698902750282861 1 0.959330201148987 experiment 0.602194499434277 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout PTGS1 ENSG00000095303 CDS Human protein_coding chr9:125143665 chr9:125143655 nonsynonymous SNV 1.000 0 11 hm5C_associated_SNPs_42174 0 0 1 0 1 PTGS1 chr9:125143650 3'AG 125143650 Downstream 6bp
chr4 154318410 154318410 1 + C T UCEC 154318425 + 154318405 154318445 41 CACTTCGAGACCAAAGGGAACAGCTAAAGGCAGAAGTAGAA CACTTTGAGACCAAAGGGAACAGCTAAAGGCAGAAGTAGAA < 41bp 1 0.2772314437683 1 0.400718569755554 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MND1 ENSG00000121211 CDS Human protein_coding chr4:154318425 chr4:154318410 stopgain 0.891 0 6 hm5C_associated_SNPs_42175 0 0 1 0 2 MND1 chr4:154318371 3'AG 154318371 Downstream 40bp
chr4 154318410 154318410 1 + C T UCEC 154318425 + 154318405 154318445 41 CACTTCGAGACCAAAGGGAACAGCTAAAGGCAGAAGTAGAA CACTTTGAGACCAAAGGGAACAGCTAAAGGCAGAAGTAGAA < 41bp 1 0.2772314437683 1 0.400718569755554 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MND1 ENSG00000121211 CDS Human protein_coding chr4:154318425 chr4:154318410 stopgain 0.891 0 6 hm5C_associated_SNPs_42175 0 0 1 0 2 MND1 chr4:154318485 5'GT 154318485 Upstream 76bp
chrX 123229252 123229252 1 + G T UCEC 123229250 + 123229230 123229270 41 AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT AAAGAACAGACGAGAGAGAACATAACTGAAGCCTGATTTCT < 41bp 1 0.200344957210896 1 0.17824187874794 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123229250 chrX:123229252 stopgain 1.000 1 23 hm5C_associated_SNPs_42179 0 0 1 0 2 STAG2 chrX:123229222 3'AG 123229222 Downstream 31bp
chrX 123229252 123229252 1 + G T UCEC 123229250 + 123229230 123229270 41 AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT AAAGAACAGACGAGAGAGAACATAACTGAAGCCTGATTTCT < 41bp 1 0.200344957210896 1 0.17824187874794 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123229250 chrX:123229252 stopgain 1.000 1 23 hm5C_associated_SNPs_42179 0 0 1 0 2 STAG2 chrX:123229299 5'GT 123229299 Upstream 48bp
chr22 19707382 19707382 1 + T G UCEC 19707377 + 19707357 19707397 41 GGTCCACAGCCTCTTCCTGACAGACTTGTACAAGGACCGGA GGTCCACAGCCTCTTCCTGACAGACGTGTACAAGGACCGGA < 41bp 1 0.29003777490199 1 0.112733483314514 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEPT5 ENSG00000184702 CDS Human protein_coding chr22:19707377 chr22:19707382 nonsynonymous SNV 0.998 2 26 hm5C_associated_SNPs_42180 0 0 0 0 1 SEPT5 chr22:19707329 3'AG 19707329 Downstream 54bp
chrX 16753426 16753426 1 + G T UCEC 16753431 + 16753411 16753451 41 AGCACAAACAATAAAGAAATCCGTAGAAGAAGGAAAAATAG AGCACAAACAATAAATAAATCCGTAGAAGAAGGAAAAATAG < 41bp 1 0.388191961773353 1 0.250655353069305 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SYAP1 ENSG00000169895 CDS Human protein_coding chrX:16753431 chrX:16753426 nonsynonymous SNV 0.978 3 16 hm5C_associated_SNPs_42182 0 0 1 0 3 SYAP1 chrX:16753350 3'AG 16753350 Downstream 77bp
chrX 16753426 16753426 1 + G T UCEC 16753431 + 16753411 16753451 41 AGCACAAACAATAAAGAAATCCGTAGAAGAAGGAAAAATAG AGCACAAACAATAAATAAATCCGTAGAAGAAGGAAAAATAG < 41bp 1 0.388191961773353 1 0.250655353069305 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SYAP1 ENSG00000169895 CDS Human protein_coding chrX:16753431 chrX:16753426 nonsynonymous SNV 0.978 3 16 hm5C_associated_SNPs_42182 0 0 1 0 3 SYAP1 chrX:16753388 3'AG 16753388 Downstream 39bp
chrX 16753426 16753426 1 + G T UCEC 16753431 + 16753411 16753451 41 AGCACAAACAATAAAGAAATCCGTAGAAGAAGGAAAAATAG AGCACAAACAATAAATAAATCCGTAGAAGAAGGAAAAATAG < 41bp 1 0.388191961773353 1 0.250655353069305 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SYAP1 ENSG00000169895 CDS Human protein_coding chrX:16753431 chrX:16753426 nonsynonymous SNV 0.978 3 16 hm5C_associated_SNPs_42182 0 0 1 0 3 SYAP1 chrX:16753468 5'GT 16753468 Upstream 43bp
chr10 292721 292721 1 + T G UCEC 292709 + 292689 292729 41 TTATGTGTTTTTCCTAGGGCCTGGATTCCTTCTGAAAACAT TTATGTGTTTTTCCTAGGGCCTGGATTCCTTCGGAAAACAT < 41bp 1 0.6584724768972 1 0.348013252019882 experiment 0.683055046205599 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZMYND11 ENSG00000015171 CDS Human protein_coding chr10:292709 chr10:292721 synonymous SNV . 0 33 hm5C_associated_SNPs_42183 0 0 0 0 1 ZMYND11 chr10:292706 3'AG 292706 Downstream 16bp
chr14 102482328 102482328 1 + T A UCEC 102482327 + 102482307 102482347 41 CGCTGCCTGGGCTCGCTCTTCTCCATGCTGCACCAGGCCTG CGCTGCCTGGGCTCGCTCTTCACCATGCTGCACCAGGCCTG < 41bp 1 0.712511080056707 1 0.690110206604004 experiment 0.574977839886587 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102482327 chr14:102482328 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_42184 0 0 1 0 1 DYNC1H1 chr14:102482423 5'GT 102482423 Upstream 96bp
chr2 114713249 114713249 1 + C A UCEC 114713267 + 114713247 114713287 41 TGCAGTTTGGTTTGGAGGATCAATGCTGGCTTCCACGGTGA TGAAGTTTGGTTTGGAGGATCAATGCTGGCTTCCACGGTGA < 41bp 1 0.352630327587728 1 0.138211518526077 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACTR3 ENSG00000115091 CDS Human protein_coding chr2:114713267 chr2:114713249 nonsynonymous SNV 0.991 5 3 hm5C_associated_SNPs_42185 0 0 1 0 2 ACTR3 chr2:114713200 3'AG 114713200 Downstream 50bp
chr2 114713249 114713249 1 + C A UCEC 114713267 + 114713247 114713287 41 TGCAGTTTGGTTTGGAGGATCAATGCTGGCTTCCACGGTGA TGAAGTTTGGTTTGGAGGATCAATGCTGGCTTCCACGGTGA < 41bp 1 0.352630327587728 1 0.138211518526077 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACTR3 ENSG00000115091 CDS Human protein_coding chr2:114713267 chr2:114713249 nonsynonymous SNV 0.991 5 3 hm5C_associated_SNPs_42185 0 0 1 0 2 ACTR3 chr2:114713283 5'GT 114713283 Upstream 35bp
chr2 71783097 71783097 1 + A C UCEC 71783115 + 71783095 71783135 41 GAAGCTGGCCTGGAGCAGGTCCACCTGGCCCTGAAGGCGCA GACGCTGGCCTGGAGCAGGTCCACCTGGCCCTGAAGGCGCA < 41bp 1 0.175865051292898 1 0.0856704711914062 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71783115 chr2:71783097 nonsynonymous SNV 0.996 3 3 hm5C_associated_SNPs_42186 0 0 0 0 1 DYSF chr2:71783095 3'AG 71783095 Downstream 3bp
chrX 48369802 48369802 1 + C A UCEC 48369821 + 48369801 48369841 41 GCTGTTCCTCTGCCGACATTCCTCCCATCGAGGCGTCTTCC GATGTTCCTCTGCCGACATTCCTCCCATCGAGGCGTCTTCC < 41bp 1 0.070570018466766 1 0.0514118075370789 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PORCN ENSG00000102312 CDS Human protein_coding chrX:48369821 chrX:48369802 nonsynonymous SNV 1.000 5 2 hm5C_associated_SNPs_42187 0 0 0 0 2 PORCN chrX:48369754 3'AG 48369754 Downstream 49bp
chrX 48369802 48369802 1 + C A UCEC 48369821 + 48369801 48369841 41 GCTGTTCCTCTGCCGACATTCCTCCCATCGAGGCGTCTTCC GATGTTCCTCTGCCGACATTCCTCCCATCGAGGCGTCTTCC < 41bp 1 0.070570018466766 1 0.0514118075370789 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PORCN ENSG00000102312 CDS Human protein_coding chrX:48369821 chrX:48369802 nonsynonymous SNV 1.000 5 2 hm5C_associated_SNPs_42187 0 0 0 0 2 PORCN chrX:48369875 5'GT 48369875 Upstream 74bp
chr15 101169714 101169714 1 + G A UCEC 101169701 + 101169681 101169721 41 CTCTTCACTATGCAGCCATGCATGGCCGGGCCCGCATTGCA CTCTTCACTATGCAGCCATGCATGGCCGGGCCCACATTGCA < 41bp 1 0.357378956569669 1 0.0405502617359161 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ASB7 ENSG00000183475 CDS Human protein_coding chr15:101169701 chr15:101169714 nonsynonymous SNV 0.997 2 34 hm5C_associated_SNPs_42188 0 0 1 0 1 ASB7 chr15:101169642 3'AG 101169642 Downstream 73bp
chr10 89505610 89505610 1 + C A UCEC 89505590 + 89505570 89505610 41 TGTTGCCACCCTGTAACAGGCACAATGAGTTTGACTTCATC TGTTGCCACCCTGTAACAGGCACAATGAGTTTGACTTCATA < 41bp 1 0.535694180553229 1 0.106844276189804 experiment 0.928611638893542 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89505590 chr10:89505610 synonymous SNV . 0 41 hm5C_associated_SNPs_42189 0 0 1 0 1 PAPSS2 chr10:89505589 3'AG 89505589 Downstream 22bp
chr3 138341067 138341067 1 + G T UCEC 138341068 + 138341048 138341088 41 TGGATGTTCAAATTAGTGGGCAAAGAAACATTCTATGTTGG TGGATGTTCAAATTAGTGGTCAAAGAAACATTCTATGTTGG < 41bp 1 0.186174186943194 1 0.573011636734009 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAIM ENSG00000158234 CDS Human protein_coding chr3:138341068 chr3:138341067 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_42192 0 0 1 0 1 FAIM chr3:138341030 3'AG 138341030 Downstream 38bp
chr8 132968060 132968060 1 + G T UCEC 132968077 + 132968057 132968097 41 AGAGAATCCTGCTGTGCTGGCTGAAAACTGTTTCAGAGAAC AGATAATCCTGCTGTGCTGGCTGAAAACTGTTTCAGAGAAC < 41bp 1 0.731587325496509 1 0.530483365058899 experiment 0.536825349006982 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFR3A ENSG00000132294 CDS Human protein_coding chr8:132968077 chr8:132968060 nonsynonymous SNV 0.998 1 4 hm5C_associated_SNPs_42193 0 0 1 0 2 EFR3A chr8:132968015 3'AG 132968015 Downstream 46bp
chr8 132968060 132968060 1 + G T UCEC 132968077 + 132968057 132968097 41 AGAGAATCCTGCTGTGCTGGCTGAAAACTGTTTCAGAGAAC AGATAATCCTGCTGTGCTGGCTGAAAACTGTTTCAGAGAAC < 41bp 1 0.731587325496509 1 0.530483365058899 experiment 0.536825349006982 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFR3A ENSG00000132294 CDS Human protein_coding chr8:132968077 chr8:132968060 nonsynonymous SNV 0.998 1 4 hm5C_associated_SNPs_42193 0 0 1 0 2 EFR3A chr8:132968152 5'GT 132968152 Upstream 93bp
chr10 118313344 118313344 1 + A G UCEC 118313333 + 118313313 118313353 41 TGGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTT TGGAAGGAGAACCAATGGGACCATTGGACGCGTCACAGGTT < 41bp 1 0.134815921133538 1 0.0478155910968781 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313333 chr10:118313344 nonsynonymous SNV 0.803 3 32 hm5C_associated_SNPs_42194 0 0 0 0 1 PNLIP chr10:118313350 5'GT 118313350 Upstream 7bp
chr10 118313344 118313344 1 + A G UCEC 118313334 + 118313314 118313354 41 GGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTTG GGAAGGAGAACCAATGGGACCATTGGACGCGTCACAGGTTG < 41bp 1 0.438416646821718 1 0.201191514730453 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313334 chr10:118313344 nonsynonymous SNV 0.803 3 31 hm5C_associated_SNPs_42195 0 0 0 0 1 PNLIP chr10:118313350 5'GT 118313350 Upstream 7bp
chr21 46624547 46624547 1 + G A UCEC 46624567 + 46624547 46624587 41 GCAGCCTTTACCACGGGGACCACCTTTCCAGGGCCATGTAC ACAGCCTTTACCACGGGGACCACCTTTCCAGGGCCATGTAC < 41bp 1 0.316757278872756 1 0.0510813891887665 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADARB1 ENSG00000197381 CDS Human protein_coding chr21:46624567 chr21:46624547 nonsynonymous SNV 0.998 5 1 hm5C_associated_SNPs_42199 0 0 0 0 1 ADARB1 chr21:46624470 3'AG 46624470 Downstream 78bp
chr5 139876768 139876768 1 + G A UCEC 139876749 + 139876729 139876769 41 ATCAGCAGATTGTAGGACAGCCTCAGATTGCTATTACTGGA ATCAGCAGATTGTAGGACAGCCTCAGATTGCTATTACTGAA < 41bp 1 0.145995203421771 1 0.0471703112125397 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139876749 chr5:139876768 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_42200 0 0 1 0 1 ANKHD1;ANKHD1-EIF4EBP3 chr5:139876863 5'GT 139876863 Upstream 96bp
chr2 204259478 204259478 1 + G T UCEC 204259473 + 204259453 204259493 41 AGTGCGTCCTCCAGTGGTACCAAATGATTACGTACCTAGCC AGTGCGTCCTCCAGTGGTACCAAATTATTACGTACCTAGCC < 41bp 1 0.437865452025504 1 0.642450094223022 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABI2 ENSG00000138443 CDS Human protein_coding chr2:204259473 chr2:204259478 nonsynonymous SNV 1.000 5 26 hm5C_associated_SNPs_42201 0 0 1 0 1 ABI2 chr2:204259569 5'GT 204259569 Upstream 92bp
chr17 78350182 78350182 1 + G A UCEC 78350171 + 78350151 78350191 41 TCCTGATATCAGCCGTTTTGCAACATCGCTCGTGGACAATT TCCTGATATCAGCCGTTTTGCAACATCGCTCATGGACAATT < 41bp 1 0.19503544261616 1 0.417670696973801 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78350171 chr17:78350182 nonsynonymous SNV 0.010 4 32 hm5C_associated_SNPs_42202 0 0 1 0 1 RNF213 chr17:78350101 3'AG 78350101 Downstream 82bp
chr1 228496035 228496035 1 + C A UCEC 228496015 + 228495995 228496035 41 TGCGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTC TGCGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTA < 41bp 1 0.157811901847828 1 0.717167615890503 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496015 chr1:228496035 synonymous SNV . 0 41 hm5C_associated_SNPs_42203 0 0 0 0 1 OBSCN chr1:228496084 5'GT 228496084 Upstream 50bp
chr1 228496035 228496035 1 + C A UCEC 228496016 + 228495996 228496036 41 GCGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCT GCGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTAT < 41bp 1 0.0768179865426357 1 0.496990919113159 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496016 chr1:228496035 synonymous SNV . 0 40 hm5C_associated_SNPs_42204 0 0 0 0 1 OBSCN chr1:228496084 5'GT 228496084 Upstream 50bp
chr1 228496035 228496035 1 + C A UCEC 228496017 + 228495997 228496037 41 CGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCTC CGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTATC < 41bp 1 0.196805593901399 1 0.888394713401794 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496017 chr1:228496035 synonymous SNV . 0 39 hm5C_associated_SNPs_42205 0 0 0 0 1 OBSCN chr1:228496084 5'GT 228496084 Upstream 50bp
chr17 38610244 38610244 1 + G A UCEC 38610248 + 38610228 38610268 41 GCCGCTTCACAGAGCCGCACCCACGAGGACCTCTACATCAT GCCGCTTCACAGAGCCACACCCACGAGGACCTCTACATCAT < 41bp 1 0.361797372876791 1 0.114600241184235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38610248 chr17:38610244 nonsynonymous SNV 0.990 4 17 hm5C_associated_SNPs_42207 0 0 1 0 2 IGFBP4 chr17:38610180 3'AG 38610180 Downstream 65bp
chr17 38610244 38610244 1 + G A UCEC 38610248 + 38610228 38610268 41 GCCGCTTCACAGAGCCGCACCCACGAGGACCTCTACATCAT GCCGCTTCACAGAGCCACACCCACGAGGACCTCTACATCAT < 41bp 1 0.361797372876791 1 0.114600241184235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38610248 chr17:38610244 nonsynonymous SNV 0.990 4 17 hm5C_associated_SNPs_42207 0 0 1 0 2 IGFBP4 chr17:38610314 5'GT 38610314 Upstream 71bp
chr5 102345548 102345548 1 + A C UCEC 102345555 + 102345535 102345575 41 GGGGAAATTATAGACATCTTCAAGCCAGTGCGCAAGGTATT GGGGAAATTATAGCCATCTTCAAGCCAGTGCGCAAGGTATT < 41bp 1 0.266703556342773 1 0.507109880447388 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PAM ENSG00000145730 CDS Human protein_coding chr5:102345555 chr5:102345548 nonsynonymous SNV 0.154 4 14 hm5C_associated_SNPs_42208 0 0 0 0 2 PAM chr5:102345455 3'AG 102345455 Downstream 94bp
chr5 102345548 102345548 1 + A C UCEC 102345555 + 102345535 102345575 41 GGGGAAATTATAGACATCTTCAAGCCAGTGCGCAAGGTATT GGGGAAATTATAGCCATCTTCAAGCCAGTGCGCAAGGTATT < 41bp 1 0.266703556342773 1 0.507109880447388 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PAM ENSG00000145730 CDS Human protein_coding chr5:102345555 chr5:102345548 nonsynonymous SNV 0.154 4 14 hm5C_associated_SNPs_42208 0 0 0 0 2 PAM chr5:102345570 5'GT 102345570 Upstream 23bp
chr5 71618005 71618005 1 + G T UCEC 71617999 + 71617979 71618019 41 TTTCTTTCTCTGATTTTTAGCTAAAAGATACCTACTTACAG TTTCTTTCTCTGATTTTTAGCTAAAATATACCTACTTACAG < 41bp 1 0.359946798140243 1 0.230035454034805 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71617999 chr5:71618005 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_42210 0 0 0 0 2 PTCD2 chr5:71617999 3'AG 71617999 Downstream 7bp
chr5 71618005 71618005 1 + G T UCEC 71617999 + 71617979 71618019 41 TTTCTTTCTCTGATTTTTAGCTAAAAGATACCTACTTACAG TTTCTTTCTCTGATTTTTAGCTAAAATATACCTACTTACAG < 41bp 1 0.359946798140243 1 0.230035454034805 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71617999 chr5:71618005 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_42210 0 0 0 0 2 PTCD2 chr5:71618091 5'GT 71618091 Upstream 87bp
chr4 107268711 107268711 1 + G T UCEC 107268727 + 107268707 107268747 41 CTAAGAAGAAGATTTGGGAGCAGATCCAGCCTGATCTTCAC CTAATAAGAAGATTTGGGAGCAGATCCAGCCTGATCTTCAC < 41bp 1 0.373366522526251 1 0.284045219421387 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AIMP1 ENSG00000164022 CDS Human protein_coding chr4:107268727 chr4:107268711 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_42211 0 0 1 0 1 AIMP1 chr4:107268683 3'AG 107268683 Downstream 29bp
chr3 66430818 66430818 1 - C T UCEC 66430812 - 66430792 66430832 41 GTCCAGAGCGCGCGGAAGCCCAGTACTTGCTTGTTTCCAAT GTCCAGAGCGCGCGAAAGCCCAGTACTTGCTTGTTTCCAAT < 41bp 1 0.547662506965684 1 0.278127431869507 experiment 0.904674986068632 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430812 chr3:66430818 nonsynonymous SNV 0.001 0 15 hm5C_associated_SNPs_42212 0 0 0 0 1 LRIG1 chr3:66430913 3'AG 66430913 Downstream 96bp
chr7 128119308 128119308 1 + T G UCEC 128119323 + 128119303 128119343 41 CGAATTCCCTGAGCTGGCACCTAGCCAAAATCAAAATCATT CGAATGCCCTGAGCTGGCACCTAGCCAAAATCAAAATCATT < 41bp 1 0.13668825857769 1 0.133847266435623 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control METTL2B ENSG00000165055 CDS Human protein_coding chr7:128119323 chr7:128119308 nonsynonymous SNV 0.992 4 6 hm5C_associated_SNPs_42213 0 0 1 0 1 METTL2B chr7:128119212 3'AG 128119212 Downstream 97bp
chr1 22332195 22332195 1 + C T UCEC 22332191 + 22332171 22332211 41 CAGGTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGG CAGGTGGTGTTGGGTGAGTACAACTTTGCTGTGAAGGAGGG < 41bp 1 0.493679013949279 1 0.433426052331924 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332191 chr1:22332195 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_42214 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 41bp
chr1 22332195 22332195 1 + C T UCEC 22332191 + 22332171 22332211 41 CAGGTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGG CAGGTGGTGTTGGGTGAGTACAACTTTGCTGTGAAGGAGGG < 41bp 1 0.493679013949279 1 0.433426052331924 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332191 chr1:22332195 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_42214 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 95bp
chr1 22332195 22332195 1 + C T UCEC 22332194 + 22332174 22332214 41 GTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCC GTGGTGTTGGGTGAGTACAACTTTGCTGTGAAGGAGGGCCC < 41bp 1 0.270109924899217 1 0.285481631755829 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332194 chr1:22332195 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_42215 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 41bp
chr1 22332195 22332195 1 + C T UCEC 22332194 + 22332174 22332214 41 GTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCC GTGGTGTTGGGTGAGTACAACTTTGCTGTGAAGGAGGGCCC < 41bp 1 0.270109924899217 1 0.285481631755829 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332194 chr1:22332195 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_42215 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 95bp
chr1 22332195 22332195 1 + C T UCEC 22332199 + 22332179 22332219 41 GTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCCGAGC GTTGGGTGAGTACAACTTTGCTGTGAAGGAGGGCCCCGAGC < 41bp 1 0.690352787313675 1 0.0749975740909576 experiment 0.61929442537265 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332199 chr1:22332195 nonsynonymous SNV 0.001 2 17 hm5C_associated_SNPs_42216 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 41bp
chr1 22332195 22332195 1 + C T UCEC 22332199 + 22332179 22332219 41 GTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCCGAGC GTTGGGTGAGTACAACTTTGCTGTGAAGGAGGGCCCCGAGC < 41bp 1 0.690352787313675 1 0.0749975740909576 experiment 0.61929442537265 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332199 chr1:22332195 nonsynonymous SNV 0.001 2 17 hm5C_associated_SNPs_42216 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 95bp
chr1 22332195 22332195 1 + C T UCEC 22332212 + 22332192 22332232 41 AACCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT AACTTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT < 41bp 1 0.295895266264984 1 0.140396237373352 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332212 chr1:22332195 nonsynonymous SNV 0.001 2 4 hm5C_associated_SNPs_42217 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 41bp
chr1 22332195 22332195 1 + C T UCEC 22332212 + 22332192 22332232 41 AACCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT AACTTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT < 41bp 1 0.295895266264984 1 0.140396237373352 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332212 chr1:22332195 nonsynonymous SNV 0.001 2 4 hm5C_associated_SNPs_42217 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 95bp
chr1 22332195 22332195 1 + C T UCEC 22332213 + 22332193 22332233 41 ACCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC ACTTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC < 41bp 1 0.730064033877888 1 0.325458824634552 experiment 0.539871932244224 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332213 chr1:22332195 nonsynonymous SNV 0.001 2 3 hm5C_associated_SNPs_42218 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 41bp
chr1 22332195 22332195 1 + C T UCEC 22332213 + 22332193 22332233 41 ACCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC ACTTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC < 41bp 1 0.730064033877888 1 0.325458824634552 experiment 0.539871932244224 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332213 chr1:22332195 nonsynonymous SNV 0.001 2 3 hm5C_associated_SNPs_42218 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 95bp
chr1 22332195 22332195 1 + C T UCEC 22332214 + 22332194 22332234 41 CCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA CTTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA < 41bp 1 0.521549803348293 1 0.260467797517776 experiment 0.956900393303414 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332214 chr1:22332195 nonsynonymous SNV 0.001 2 2 hm5C_associated_SNPs_42219 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 41bp
chr1 22332195 22332195 1 + C T UCEC 22332214 + 22332194 22332234 41 CCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA CTTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA < 41bp 1 0.521549803348293 1 0.260467797517776 experiment 0.956900393303414 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332214 chr1:22332195 nonsynonymous SNV 0.001 2 2 hm5C_associated_SNPs_42219 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 95bp
chr1 22332195 22332195 1 + C T UCEC 22332215 + 22332195 22332235 41 CTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA TTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA < 41bp 1 0.718864166086742 1 0.201122045516968 experiment 0.562271667826517 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332215 chr1:22332195 nonsynonymous SNV 0.001 2 1 hm5C_associated_SNPs_42220 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 41bp
chr1 22332195 22332195 1 + C T UCEC 22332215 + 22332195 22332235 41 CTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA TTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA < 41bp 1 0.718864166086742 1 0.201122045516968 experiment 0.562271667826517 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332215 chr1:22332195 nonsynonymous SNV 0.001 2 1 hm5C_associated_SNPs_42220 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 95bp
chr10 75830567 75830567 1 + G A UCEC 75830552 + 75830532 75830572 41 TCCTCTCTGGAACATCAGACCTGCTCCTTACCTTCGATGAG TCCTCTCTGGAACATCAGACCTGCTCCTTACCTTCAATGAG < 41bp 1 0.308678943994952 1 0.0504015982151031 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75830552 chr10:75830567 nonsynonymous SNV 0.998 4 36 hm5C_associated_SNPs_42221 0 0 1 0 1 VCL chr10:75830578 5'GT 75830578 Upstream 12bp
chr11 57373909 57373909 1 + G T UCEC 57373925 + 57373905 57373945 41 CCAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA CCAATAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA < 41bp 1 0.0168171932082742 1 0.0582644939422607 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373925 chr11:57373909 nonsynonymous SNV 0.000 2 5 hm5C_associated_SNPs_42222 0 0 0 0 1 SERPING1 chr11:57373881 3'AG 57373881 Downstream 29bp
chr11 57373909 57373909 1 + G T UCEC 57373926 + 57373906 57373946 41 CAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAG CAATAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAG < 41bp 1 0.0116819321811495 1 0.121042102575302 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373926 chr11:57373909 nonsynonymous SNV 0.000 2 4 hm5C_associated_SNPs_42223 0 0 0 0 1 SERPING1 chr11:57373881 3'AG 57373881 Downstream 29bp
chr11 57373909 57373909 1 + G T UCEC 57373927 + 57373907 57373947 41 AAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAGT AATAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAGT < 41bp 1 0.0183549901354522 1 0.0574821829795837 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373927 chr11:57373909 nonsynonymous SNV 0.000 2 3 hm5C_associated_SNPs_42224 0 0 0 0 1 SERPING1 chr11:57373881 3'AG 57373881 Downstream 29bp
chrX 17770030 17770030 1 + C A UCEC 17770024 + 17770004 17770044 41 GGTCGGTGGAAGCAGTGGTCCTATTTCTAAAACAAACAGAT GGTCGGTGGAAGCAGTGGTCCTATTTATAAAACAAACAGAT < 41bp 1 0.328913412272107 1 0.329290628433228 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCML1 ENSG00000047634 CDS Human protein_coding chrX:17770024 chrX:17770030 nonsynonymous SNV 0.011 2 27 hm5C_associated_SNPs_42225 0 0 1 0 2 SCML1 chrX:17769935 3'AG 17769935 Downstream 96bp
chrX 17770030 17770030 1 + C A UCEC 17770024 + 17770004 17770044 41 GGTCGGTGGAAGCAGTGGTCCTATTTCTAAAACAAACAGAT GGTCGGTGGAAGCAGTGGTCCTATTTATAAAACAAACAGAT < 41bp 1 0.328913412272107 1 0.329290628433228 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCML1 ENSG00000047634 CDS Human protein_coding chrX:17770024 chrX:17770030 nonsynonymous SNV 0.011 2 27 hm5C_associated_SNPs_42225 0 0 1 0 2 SCML1 chrX:17770086 5'GT 17770086 Upstream 57bp
chr18 21508196 21508196 1 + G A UCEC 21508180 + 21508160 21508200 41 AATGATACTGTGGGAGTAACCAAAAAGTGCTCGGAAGACTG AATGATACTGTGGGAGTAACCAAAAAGTGCTCGGAAAACTG < 41bp 1 0.412819602437313 1 0.800147771835327 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21508180 chr18:21508196 nonsynonymous SNV 0.983 3 37 hm5C_associated_SNPs_42226 0 0 0 0 1 LAMA3 chr18:21508204 5'GT 21508204 Upstream 9bp
chr17 30535220 30535220 1 + A C UCEC 30535224 + 30535204 30535244 41 AGTATTTCACCTACTGATTTCTGCAGGAAACACAAAATGCC AGTATTTCACCTACTGCTTTCTGCAGGAAACACAAAATGCC < 41bp 1 0.735944880652631 1 0.81133645772934 experiment 0.528110238694739 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHOT1 ENSG00000126858 CDS Human protein_coding chr17:30535224 chr17:30535220 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_42230 0 0 1 0 1 RHOT1 chr17:30535126 3'AG 30535126 Downstream 95bp
chr2 220503475 220503475 1 + G A UCEC 220503474 + 220503454 220503494 41 GACCTCTCCCGATAAGCGCTCGTGGTTCATCCCACCCCTGG GACCTCTCCCGATAAGCGCTCATGGTTCATCCCACCCCTGG < 41bp 1 0.458684547012411 1 0.653154134750366 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220503474 chr2:220503475 synonymous SNV . 0 22 hm5C_associated_SNPs_42231 0 0 0 0 1 SLC4A3 chr2:220503425 3'AG 220503425 Downstream 51bp
chr19 39860392 39860392 1 + G A UCEC 39860373 + 39860353 39860393 41 CCACCTTCCCCTGCTTCAGCCAGGCAACACAGAGGCCAAGT CCACCTTCCCCTGCTTCAGCCAGGCAACACAGAGGCCAAAT < 41bp 1 0.48898794764508 1 0.678594589233398 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39860373 chr19:39860392 synonymous SNV . 0 40 hm5C_associated_SNPs_42232 0 0 1 0 1 SAMD4B chr19:39860295 3'AG 39860295 Downstream 98bp
chr19 39860392 39860392 1 + G A UCEC 39860388 + 39860368 39860408 41 TCAGCCAGGCAACACAGAGGCCAAGTCGGAGTACATGAGGC TCAGCCAGGCAACACAGAGGCCAAATCGGAGTACATGAGGC < 41bp 1 0.249183909071917 1 0.249624788761139 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39860388 chr19:39860392 synonymous SNV . 0 25 hm5C_associated_SNPs_42233 0 0 1 0 1 SAMD4B chr19:39860295 3'AG 39860295 Downstream 98bp
chr6 44116553 44116553 1 + C A UCEC 44116536 + 44116516 44116556 41 CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTCATC CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTAATC < 41bp 1 0.0942493911556688 1 0.724096298217773 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116536 chr6:44116553 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_42235 0 0 1 3 1 TMEM63B chr6:44116529 3'AG 44116529 Downstream 25bp
chrX 10180620 10180620 1 + G T UCEC 10180611 + 10180591 10180631 41 TACCATCACCATGACTGGATCATCTTCAGGAACTGGTGCAG TACCATCACCATGACTGGATCATCTTCAGTAACTGGTGCAG < 41bp 1 0.161361704323969 1 0.0745160281658173 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10180611 chrX:10180620 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_42237 0 0 0 0 1 CLCN4 chrX:10180693 5'GT 10180693 Upstream 74bp
chr2 228398426 228398426 1 + A T UCEC 228398425 + 228398405 228398445 41 GCTGGTTTACAGACTGCAGACAAATATGCAGCACTTGCTAA GCTGGTTTACAGACTGCAGACTAATATGCAGCACTTGCTAA < 41bp 1 0.447199311774735 1 0.0620908141136169 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGFG1 ENSG00000173744 CDS Human protein_coding chr2:228398425 chr2:228398426 stopgain 1.000 1 22 hm5C_associated_SNPs_42238 0 0 1 0 1 AGFG1 chr2:228398474 5'GT 228398474 Upstream 49bp
chr7 142458534 142458534 1 + T G UCEC 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGGG < 41bp 1 0.269746123065061 1 0.27891081571579 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458534 nonsynonymous SNV 0.800 5 40 hm5C_associated_SNPs_42239 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 55bp
chr7 142458534 142458534 1 + T G UCEC 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGGG < 41bp 1 0.269746123065061 1 0.27891081571579 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458534 nonsynonymous SNV 0.800 5 40 hm5C_associated_SNPs_42239 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 32bp
chr7 142458534 142458534 1 + T G UCEC 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGGGGG < 41bp 1 0.0977860855407777 1 0.0469091832637787 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458534 nonsynonymous SNV 0.800 5 38 hm5C_associated_SNPs_42240 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 55bp
chr7 142458534 142458534 1 + T G UCEC 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGGGGG < 41bp 1 0.0977860855407777 1 0.0469091832637787 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458534 nonsynonymous SNV 0.800 5 38 hm5C_associated_SNPs_42240 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 32bp
chr7 142458534 142458534 1 + T G UCEC 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGGGGGT < 41bp 1 0.171015957534185 1 0.0630175173282623 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458534 nonsynonymous SNV 0.800 5 37 hm5C_associated_SNPs_42241 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 55bp
chr7 142458534 142458534 1 + T G UCEC 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGGGGGT < 41bp 1 0.171015957534185 1 0.0630175173282623 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458534 nonsynonymous SNV 0.800 5 37 hm5C_associated_SNPs_42241 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 32bp
chr7 142458534 142458534 1 + T G UCEC 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGGGGGTG < 41bp 1 0.417424527551702 1 0.114547371864319 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458534 nonsynonymous SNV 0.800 5 36 hm5C_associated_SNPs_42242 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 55bp
chr7 142458534 142458534 1 + T G UCEC 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGGGGGTG < 41bp 1 0.417424527551702 1 0.114547371864319 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458534 nonsynonymous SNV 0.800 5 36 hm5C_associated_SNPs_42242 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 32bp
chr7 142458534 142458534 1 + T G UCEC 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGGTGGCTCCCTCATCAACGAACAGGGGGTGGT < 41bp 1 0.481455452672551 1 0.551734507083893 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458534 nonsynonymous SNV 0.800 5 34 hm5C_associated_SNPs_42243 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 55bp
chr7 142458534 142458534 1 + T G UCEC 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGGTGGCTCCCTCATCAACGAACAGGGGGTGGT < 41bp 1 0.481455452672551 1 0.551734507083893 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458534 nonsynonymous SNV 0.800 5 34 hm5C_associated_SNPs_42243 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 32bp
chr7 142458534 142458534 1 + T G UCEC 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGGTGGCTCCCTCATCAACGAACAGGGGGTGGTATC < 41bp 1 0.736720329767732 1 0.767157852649689 experiment 0.526559340464537 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458534 nonsynonymous SNV 0.800 5 31 hm5C_associated_SNPs_42244 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 55bp
chr7 142458534 142458534 1 + T G UCEC 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGGTGGCTCCCTCATCAACGAACAGGGGGTGGTATC < 41bp 1 0.736720329767732 1 0.767157852649689 experiment 0.526559340464537 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458534 nonsynonymous SNV 0.800 5 31 hm5C_associated_SNPs_42244 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 32bp
chr7 142458534 142458534 1 + T G UCEC 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGCTCCCTCATCAACGAACAGGGGGTGGTATCAGC < 41bp 1 0.451280204138987 1 0.511978983879089 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458534 nonsynonymous SNV 0.800 5 28 hm5C_associated_SNPs_42245 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 55bp
chr7 142458534 142458534 1 + T G UCEC 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGCTCCCTCATCAACGAACAGGGGGTGGTATCAGC < 41bp 1 0.451280204138987 1 0.511978983879089 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458534 nonsynonymous SNV 0.800 5 28 hm5C_associated_SNPs_42245 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 32bp
chr7 142458534 142458534 1 + T G UCEC 142458547 + 142458527 142458567 41 CGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT CGAACAGGGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT < 41bp 1 0.608134853458228 1 0.86400043964386 experiment 0.783730293083544 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458547 chr7:142458534 nonsynonymous SNV 0.800 5 8 hm5C_associated_SNPs_42246 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 55bp
chr7 142458534 142458534 1 + T G UCEC 142458547 + 142458527 142458567 41 CGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT CGAACAGGGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT < 41bp 1 0.608134853458228 1 0.86400043964386 experiment 0.783730293083544 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458547 chr7:142458534 nonsynonymous SNV 0.800 5 8 hm5C_associated_SNPs_42246 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 32bp
chr7 142458534 142458534 1 + T G UCEC 142458551 + 142458531 142458571 41 CAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGT CAGGGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGT < 41bp 1 0.195899092583146 1 0.486309617757797 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458551 chr7:142458534 nonsynonymous SNV 0.800 5 4 hm5C_associated_SNPs_42247 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 55bp
chr7 142458534 142458534 1 + T G UCEC 142458551 + 142458531 142458571 41 CAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGT CAGGGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGT < 41bp 1 0.195899092583146 1 0.486309617757797 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458551 chr7:142458534 nonsynonymous SNV 0.800 5 4 hm5C_associated_SNPs_42247 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 32bp
chr7 142458534 142458534 1 + T G UCEC 142458552 + 142458532 142458572 41 AGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTG AGGGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTG < 41bp 1 0.398688166445591 1 0.256227225065231 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458552 chr7:142458534 nonsynonymous SNV 0.800 5 3 hm5C_associated_SNPs_42248 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 55bp
chr7 142458534 142458534 1 + T G UCEC 142458552 + 142458532 142458572 41 AGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTG AGGGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTG < 41bp 1 0.398688166445591 1 0.256227225065231 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458552 chr7:142458534 nonsynonymous SNV 0.800 5 3 hm5C_associated_SNPs_42248 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 32bp
chr7 142458534 142458534 1 + T G UCEC 142458554 + 142458534 142458574 41 TGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTG GGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTG < 41bp 1 0.310934414085213 1 0.142906874418259 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458554 chr7:142458534 nonsynonymous SNV 0.800 5 1 hm5C_associated_SNPs_42249 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 55bp
chr7 142458534 142458534 1 + T G UCEC 142458554 + 142458534 142458574 41 TGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTG GGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTG < 41bp 1 0.310934414085213 1 0.142906874418259 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458554 chr7:142458534 nonsynonymous SNV 0.800 5 1 hm5C_associated_SNPs_42249 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 32bp
chr5 72189471 72189471 1 + C A UCEC 72189491 + 72189471 72189511 41 CTTTTGCCCTGTTAGGTGACCTCACAAAAGCTTGCTTTCAG ATTTTGCCCTGTTAGGTGACCTCACAAAAGCTTGCTTTCAG < 41bp 1 0.242719616074593 1 0.111446708440781 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72189491 chr5:72189471 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_42250 0 0 1 0 2 TNPO1 chr5:72189443 3'AG 72189443 Downstream 29bp
chr5 72189471 72189471 1 + C A UCEC 72189491 + 72189471 72189511 41 CTTTTGCCCTGTTAGGTGACCTCACAAAAGCTTGCTTTCAG ATTTTGCCCTGTTAGGTGACCTCACAAAAGCTTGCTTTCAG < 41bp 1 0.242719616074593 1 0.111446708440781 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72189491 chr5:72189471 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_42250 0 0 1 0 2 TNPO1 chr5:72189530 5'GT 72189530 Upstream 60bp
chr9 2186185 2186185 1 + T C UCEC 2186182 + 2186162 2186202 41 GAAGAGAGTGAGGATGAAAGCAATGAAGAGGAGGAAGAGGA GAAGAGAGTGAGGATGAAAGCAACGAAGAGGAGGAAGAGGA < 41bp 1 0.554044616600447 1 0.387548714876175 experiment 0.891910766799105 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2186182 chr9:2186185 synonymous SNV . 0 24 hm5C_associated_SNPs_42251 0 0 1 0 1 SMARCA2 chr9:2186096 3'AG 2186096 Downstream 90bp
chr5 142264893 142264893 1 + G A UCEC 142264910 + 142264890 142264930 41 ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTT ACAAAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTT < 41bp 1 0.100934098078593 1 0.431180119514465 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142264910 chr5:142264893 nonsynonymous SNV 0.999 2 4 hm5C_associated_SNPs_42252 0 0 0 0 2 ARHGAP26 chr5:142264863 3'AG 142264863 Downstream 31bp
chr5 142264893 142264893 1 + G A UCEC 142264910 + 142264890 142264930 41 ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTT ACAAAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTT < 41bp 1 0.100934098078593 1 0.431180119514465 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142264910 chr5:142264893 nonsynonymous SNV 0.999 2 4 hm5C_associated_SNPs_42252 0 0 0 0 2 ARHGAP26 chr5:142264964 5'GT 142264964 Upstream 72bp
chr13 92051394 92051394 1 + G T UCEC 92051411 + 92051391 92051431 41 GAAGAAGTTCGGAAACTTTTCCAGTGGCGGCTGCTGGGAGC GAATAAGTTCGGAAACTTTTCCAGTGGCGGCTGCTGGGAGC < 41bp 1 0.49610265014895 1 0.747032642364502 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPC5 ENSG00000179399 CDS Human protein_coding chr13:92051411 chr13:92051394 stopgain 1.000 0 4 hm5C_associated_SNPs_42253 0 0 0 0 1 GPC5 chr13:92051463 5'GT 92051463 Upstream 70bp
chr2 192141642 192141642 1 + A C UCEC 192141649 + 192141629 192141669 41 AAATGGAGGTGAAAACCTCACTTCTGGACAATATGATTGGA AAATGGAGGTGAACACCTCACTTCTGGACAATATGATTGGA < 41bp 1 0.243276958170409 1 0.216290175914764 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MYO1B ENSG00000128641 CDS Human protein_coding chr2:192141649 chr2:192141642 nonsynonymous SNV 0.969 2 14 hm5C_associated_SNPs_42254 0 0 1 0 1 MYO1B chr2:192141613 3'AG 192141613 Downstream 30bp
chr19 34717316 34717316 1 + A G UCEC 34717318 + 34717298 34717338 41 TTTTTTACCTTTCAGAAAACCACAGCTTTTGGACCCTAAAA TTTTTTACCTTTCAGAAAGCCACAGCTTTTGGACCCTAAAA < 41bp 1 0.190499533387477 1 0.305062413215637 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSM14A ENSG00000257103 CDS Human protein_coding chr19:34717318 chr19:34717316 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_42255 0 0 1 0 2 LSM14A chr19:34717313 3'AG 34717313 Downstream 4bp
chr19 34717316 34717316 1 + A G UCEC 34717318 + 34717298 34717338 41 TTTTTTACCTTTCAGAAAACCACAGCTTTTGGACCCTAAAA TTTTTTACCTTTCAGAAAGCCACAGCTTTTGGACCCTAAAA < 41bp 1 0.190499533387477 1 0.305062413215637 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSM14A ENSG00000257103 CDS Human protein_coding chr19:34717318 chr19:34717316 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_42255 0 0 1 0 2 LSM14A chr19:34717369 5'GT 34717369 Upstream 54bp
chr5 177633861 177633861 1 + G T UCEC 177633841 + 177633821 177633861 41 TCTTCGTTGGGGGTCTGAATCCTGAAGCCACTGAGGAAAAG TCTTCGTTGGGGGTCTGAATCCTGAAGCCACTGAGGAAAAT < 41bp 1 0.577811465635747 1 0.274541735649109 experiment 0.844377068728505 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPAB ENSG00000197451 CDS Human protein_coding chr5:177633841 chr5:177633861 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_42258 0 0 1 0 1 HNRNPAB chr5:177633891 5'GT 177633891 Upstream 31bp
chr5 177633861 177633861 1 + G T UCEC 177633848 + 177633828 177633868 41 TGGGGGTCTGAATCCTGAAGCCACTGAGGAAAAGATCAGGG TGGGGGTCTGAATCCTGAAGCCACTGAGGAAAATATCAGGG < 41bp 1 0.135185074519531 1 0.348401814699173 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPAB ENSG00000197451 CDS Human protein_coding chr5:177633848 chr5:177633861 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_42259 0 0 1 0 1 HNRNPAB chr5:177633891 5'GT 177633891 Upstream 31bp
chr5 177633861 177633861 1 + G T UCEC 177633849 + 177633829 177633869 41 GGGGGTCTGAATCCTGAAGCCACTGAGGAAAAGATCAGGGA GGGGGTCTGAATCCTGAAGCCACTGAGGAAAATATCAGGGA < 41bp 1 0.441065174919391 1 0.370948761701584 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPAB ENSG00000197451 CDS Human protein_coding chr5:177633849 chr5:177633861 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_42260 0 0 1 0 1 HNRNPAB chr5:177633891 5'GT 177633891 Upstream 31bp
chr5 177633861 177633861 1 + G T UCEC 177633851 + 177633831 177633871 41 GGGTCTGAATCCTGAAGCCACTGAGGAAAAGATCAGGGAGT GGGTCTGAATCCTGAAGCCACTGAGGAAAATATCAGGGAGT < 41bp 1 0.467276404710354 1 0.375456094741821 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPAB ENSG00000197451 CDS Human protein_coding chr5:177633851 chr5:177633861 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_42261 0 0 1 0 1 HNRNPAB chr5:177633891 5'GT 177633891 Upstream 31bp
chr10 43316410 43316410 1 + C A UCEC 43316391 + 43316371 43316411 41 TTTCCTTTAAGGCCCTATCACTCCACAGGGAACTGGTTTCT TTTCCTTTAAGGCCCTATCACTCCACAGGGAACTGGTTTAT < 41bp 1 0.729011103039663 1 0.98382043838501 experiment 0.541977793920675 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BMS1 ENSG00000165733 CDS Human protein_coding chr10:43316391 chr10:43316410 nonsynonymous SNV 0.997 3 40 hm5C_associated_SNPs_42262 0 0 1 0 2 BMS1 chr10:43316382 3'AG 43316382 Downstream 29bp
chr10 43316410 43316410 1 + C A UCEC 43316391 + 43316371 43316411 41 TTTCCTTTAAGGCCCTATCACTCCACAGGGAACTGGTTTCT TTTCCTTTAAGGCCCTATCACTCCACAGGGAACTGGTTTAT < 41bp 1 0.729011103039663 1 0.98382043838501 experiment 0.541977793920675 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BMS1 ENSG00000165733 CDS Human protein_coding chr10:43316391 chr10:43316410 nonsynonymous SNV 0.997 3 40 hm5C_associated_SNPs_42262 0 0 1 0 2 BMS1 chr10:43316440 5'GT 43316440 Upstream 31bp
chr20 21362684 21362684 1 + A C UCEC 21362679 + 21362659 21362699 41 GTCCTCCTCCCCTTTTCCAGCAGCAAAGGTTTGACAGGTAA GTCCTCCTCCCCTTTTCCAGCAGCACAGGTTTGACAGGTAA < 41bp 1 0.551050166423136 1 0.297279715538025 experiment 0.897899667153728 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XRN2 ENSG00000088930 CDS Human protein_coding chr20:21362679 chr20:21362684 nonsynonymous SNV 0.999 0 26 hm5C_associated_SNPs_42263 0 0 1 0 2 XRN2 chr20:21362632 3'AG 21362632 Downstream 53bp
chr20 21362684 21362684 1 + A C UCEC 21362679 + 21362659 21362699 41 GTCCTCCTCCCCTTTTCCAGCAGCAAAGGTTTGACAGGTAA GTCCTCCTCCCCTTTTCCAGCAGCACAGGTTTGACAGGTAA < 41bp 1 0.551050166423136 1 0.297279715538025 experiment 0.897899667153728 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XRN2 ENSG00000088930 CDS Human protein_coding chr20:21362679 chr20:21362684 nonsynonymous SNV 0.999 0 26 hm5C_associated_SNPs_42263 0 0 1 0 2 XRN2 chr20:21362695 5'GT 21362695 Upstream 12bp
chrX 123229267 123229267 1 + T G UCEC 123229250 + 123229230 123229270 41 AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATGTCT < 41bp 1 0.502571560694292 1 0.532979965209961 experiment 0.994856878611416 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123229250 chrX:123229267 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_42264 0 0 1 0 2 STAG2 chrX:123229222 3'AG 123229222 Downstream 46bp
chrX 123229267 123229267 1 + T G UCEC 123229250 + 123229230 123229270 41 AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATGTCT < 41bp 1 0.502571560694292 1 0.532979965209961 experiment 0.994856878611416 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123229250 chrX:123229267 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_42264 0 0 1 0 2 STAG2 chrX:123229299 5'GT 123229299 Upstream 33bp
chr5 154251380 154251380 1 + C G UCEC 154251388 + 154251368 154251408 41 TCTGAACCTTTTCTTCCCATCCATTTATGATGTGAAATACC TCTGAACCTTTTGTTCCCATCCATTTATGATGTGAAATACC < 41bp 1 0.0523058154107125 1 0.12595322728157 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT8 ENSG00000155508 CDS Human protein_coding chr5:154251388 chr5:154251380 nonsynonymous SNV 0.998 1 13 hm5C_associated_SNPs_42265 0 0 1 0 2 CNOT8 chr5:154251290 3'AG 154251290 Downstream 91bp
chr5 154251380 154251380 1 + C G UCEC 154251388 + 154251368 154251408 41 TCTGAACCTTTTCTTCCCATCCATTTATGATGTGAAATACC TCTGAACCTTTTGTTCCCATCCATTTATGATGTGAAATACC < 41bp 1 0.0523058154107125 1 0.12595322728157 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT8 ENSG00000155508 CDS Human protein_coding chr5:154251388 chr5:154251380 nonsynonymous SNV 0.998 1 13 hm5C_associated_SNPs_42265 0 0 1 0 2 CNOT8 chr5:154251434 5'GT 154251434 Upstream 55bp
chr17 41348562 41348562 1 + G A UCEC 41348551 + 41348531 41348571 41 ACAGTCCTTTAATAGAGAAGCCAGGCTTGGGGCAGATAGAG ACAGTCCTTTAATAGAGAAGCCAGGCTTGGGACAGATAGAG < 41bp 1 0.304497320408322 1 0.177854955196381 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41348551 chr17:41348562 synonymous SNV . 0 32 hm5C_associated_SNPs_42266 0 0 1 0 2 NBR1 chr17:41348498 3'AG 41348498 Downstream 65bp
chr17 41348562 41348562 1 + G A UCEC 41348551 + 41348531 41348571 41 ACAGTCCTTTAATAGAGAAGCCAGGCTTGGGGCAGATAGAG ACAGTCCTTTAATAGAGAAGCCAGGCTTGGGACAGATAGAG < 41bp 1 0.304497320408322 1 0.177854955196381 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41348551 chr17:41348562 synonymous SNV . 0 32 hm5C_associated_SNPs_42266 0 0 1 0 2 NBR1 chr17:41348608 5'GT 41348608 Upstream 47bp
chr17 41348562 41348562 1 + G A UCEC 41348556 + 41348536 41348576 41 CCTTTAATAGAGAAGCCAGGCTTGGGGCAGATAGAGGAAGA CCTTTAATAGAGAAGCCAGGCTTGGGACAGATAGAGGAAGA < 41bp 1 0.55258282167663 1 0.0913607478141785 experiment 0.89483435664674 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41348556 chr17:41348562 synonymous SNV . 0 27 hm5C_associated_SNPs_42267 0 0 1 0 2 NBR1 chr17:41348498 3'AG 41348498 Downstream 65bp
chr17 41348562 41348562 1 + G A UCEC 41348556 + 41348536 41348576 41 CCTTTAATAGAGAAGCCAGGCTTGGGGCAGATAGAGGAAGA CCTTTAATAGAGAAGCCAGGCTTGGGACAGATAGAGGAAGA < 41bp 1 0.55258282167663 1 0.0913607478141785 experiment 0.89483435664674 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41348556 chr17:41348562 synonymous SNV . 0 27 hm5C_associated_SNPs_42267 0 0 1 0 2 NBR1 chr17:41348608 5'GT 41348608 Upstream 47bp
chr17 41348562 41348562 1 + G A UCEC 41348563 + 41348543 41348583 41 TAGAGAAGCCAGGCTTGGGGCAGATAGAGGAAGAGAATGAA TAGAGAAGCCAGGCTTGGGACAGATAGAGGAAGAGAATGAA < 41bp 1 0.339159509056044 1 0.273230373859406 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41348563 chr17:41348562 synonymous SNV . 0 20 hm5C_associated_SNPs_42268 0 0 1 0 2 NBR1 chr17:41348498 3'AG 41348498 Downstream 65bp
chr17 41348562 41348562 1 + G A UCEC 41348563 + 41348543 41348583 41 TAGAGAAGCCAGGCTTGGGGCAGATAGAGGAAGAGAATGAA TAGAGAAGCCAGGCTTGGGACAGATAGAGGAAGAGAATGAA < 41bp 1 0.339159509056044 1 0.273230373859406 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41348563 chr17:41348562 synonymous SNV . 0 20 hm5C_associated_SNPs_42268 0 0 1 0 2 NBR1 chr17:41348608 5'GT 41348608 Upstream 47bp
chr14 62205000 62205000 1 + C A UCEC 62204993 + 62204973 62205013 41 AAGTTGCATTAAAATTAGAACCAAATCCAGAGTCACTGGAA AAGTTGCATTAAAATTAGAACCAAATCAAGAGTCACTGGAA < 41bp 1 0.239875470553044 1 0.249249249696732 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HIF1A ENSG00000100644 CDS Human protein_coding chr14:62204993 chr14:62205000 nonsynonymous SNV 1.000 0 28 hm5C_associated_SNPs_42269 0 0 1 0 1 HIF1A chr14:62205091 5'GT 62205091 Upstream 92bp
chr16 31196313 31196313 1 + G A UCEC 31196312 + 31196292 31196332 41 AGTGGTGGTGGCAGTGGTGGCGGTTATGGCAATCAAGACCA AGTGGTGGTGGCAGTGGTGGCAGTTATGGCAATCAAGACCA < 41bp 1 0.54985592679863 1 0.439034640789032 experiment 0.900288146402739 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control FUS ENSG00000089280 CDS Human protein_coding chr16:31196312 chr16:31196313 nonsynonymous SNV 0.920 3 22 hm5C_associated_SNPs_42270 0 0 1 0 1 FUS chr16:31196260 3'AG 31196260 Downstream 54bp
chr18 7955212 7955212 1 + G T UCEC 7955214 + 7955194 7955234 41 ACTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTG ACTCCATCAATGGGGATGTGCCCATTGTGGCCCGAGAGGTG < 41bp 1 0.113935862130295 1 0.13978785276413 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955214 chr18:7955212 nonsynonymous SNV 0.895 4 19 hm5C_associated_SNPs_42273 0 0 0 0 1 PTPRM chr18:7955119 3'AG 7955119 Downstream 94bp
chr18 7955212 7955212 1 + G T UCEC 7955215 + 7955195 7955235 41 CTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGG CTCCATCAATGGGGATGTGCCCATTGTGGCCCGAGAGGTGG < 41bp 1 0.108594638180163 1 0.0633066892623901 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955215 chr18:7955212 nonsynonymous SNV 0.895 4 18 hm5C_associated_SNPs_42274 0 0 0 0 1 PTPRM chr18:7955119 3'AG 7955119 Downstream 94bp
chr18 7955212 7955212 1 + G T UCEC 7955216 + 7955196 7955236 41 TCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGGA TCCATCAATGGGGATGTGCCCATTGTGGCCCGAGAGGTGGA < 41bp 1 0.145126987480844 1 0.1586934030056 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955216 chr18:7955212 nonsynonymous SNV 0.895 4 17 hm5C_associated_SNPs_42275 0 0 0 0 1 PTPRM chr18:7955119 3'AG 7955119 Downstream 94bp
chr18 7955212 7955212 1 + G T UCEC 7955224 + 7955204 7955244 41 TGGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCA TGGGGATGTGCCCATTGTGGCCCGAGAGGTGGAGTACTGCA < 41bp 1 0.522849807897886 1 0.124780505895615 experiment 0.954300384204227 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955224 chr18:7955212 nonsynonymous SNV 0.895 4 9 hm5C_associated_SNPs_42276 0 0 0 0 1 PTPRM chr18:7955119 3'AG 7955119 Downstream 94bp
chr18 7955212 7955212 1 + G T UCEC 7955225 + 7955205 7955245 41 GGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCAC GGGGATGTGCCCATTGTGGCCCGAGAGGTGGAGTACTGCAC < 41bp 1 0.273371690641618 1 0.441462367773056 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955225 chr18:7955212 nonsynonymous SNV 0.895 4 8 hm5C_associated_SNPs_42277 0 0 0 0 1 PTPRM chr18:7955119 3'AG 7955119 Downstream 94bp
chr18 7955212 7955212 1 + G T UCEC 7955226 + 7955206 7955246 41 GGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCACG GGGATGTGCCCATTGTGGCCCGAGAGGTGGAGTACTGCACG < 41bp 1 0.643303157677311 1 0.501182079315186 experiment 0.713393684645378 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955226 chr18:7955212 nonsynonymous SNV 0.895 4 7 hm5C_associated_SNPs_42278 0 0 0 0 1 PTPRM chr18:7955119 3'AG 7955119 Downstream 94bp
chr1 161748036 161748036 1 + T C UCEC 161748056 + 161748036 161748076 41 TCTGCTCTCTTTGCTGAACTCGGTTATTTCACAGACACTGA CCTGCTCTCTTTGCTGAACTCGGTTATTTCACAGACACTGA < 41bp 1 0.313871535762188 1 0.204070746898651 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161748056 chr1:161748036 nonsynonymous SNV 0.863 3 1 hm5C_associated_SNPs_42279 0 0 1 0 2 ATF6 chr1:161748034 3'AG 161748034 Downstream 3bp
chr1 161748036 161748036 1 + T C UCEC 161748056 + 161748036 161748076 41 TCTGCTCTCTTTGCTGAACTCGGTTATTTCACAGACACTGA CCTGCTCTCTTTGCTGAACTCGGTTATTTCACAGACACTGA < 41bp 1 0.313871535762188 1 0.204070746898651 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161748056 chr1:161748036 nonsynonymous SNV 0.863 3 1 hm5C_associated_SNPs_42279 0 0 1 0 2 ATF6 chr1:161748110 5'GT 161748110 Upstream 75bp
chrX 57515251 57515251 1 + A G UCEC 57515266 + 57515246 57515286 41 AAAGGACTCCCTTTAGGCATCCAGGTTGTGGCTGGACCCTT AAAGGGCTCCCTTTAGGCATCCAGGTTGTGGCTGGACCCTT < 41bp 1 0.563649470865872 1 0.772432386875153 experiment 0.872701058268257 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57515266 chrX:57515251 synonymous SNV . 0 6 hm5C_associated_SNPs_42280 0 0 0 0 1 FAAH2 chrX:57515190 3'AG 57515190 Downstream 62bp
chr5 149206256 149206256 1 + C T UCEC 149206241 + 149206221 149206261 41 CCCTCCTCACTCCAGATTGACAGTGAGAATGAGGCCCTCCT CCCTCCTCACTCCAGATTGACAGTGAGAATGAGGCTCTCCT < 41bp 1 0.194060863045016 1 0.0375402271747589 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPARGC1B ENSG00000155846 CDS Human protein_coding chr5:149206241 chr5:149206256 synonymous SNV . 0 36 hm5C_associated_SNPs_42283 0 0 1 0 1 PPARGC1B chr5:149206236 3'AG 149206236 Downstream 21bp
chrX 64956684 64956684 1 + G A UCEC 64956664 + 64956644 64956684 41 TCTCCTTCCCTAGTGCTATGCTGGAAAATGAGAAGAAGAAG TCTCCTTCCCTAGTGCTATGCTGGAAAATGAGAAGAAGAAA < 41bp 1 0.675573342862956 1 0.668651461601257 experiment 0.648853314274088 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956664 chrX:64956684 synonymous SNV . 0 41 hm5C_associated_SNPs_42284 0 0 1 0 1 MSN chrX:64956657 3'AG 64956657 Downstream 28bp
chrX 64956684 64956684 1 + G A UCEC 64956685 + 64956665 64956705 41 TGGAAAATGAGAAGAAGAAGCGTGAAATGGCAGAGAAGGAG TGGAAAATGAGAAGAAGAAACGTGAAATGGCAGAGAAGGAG < 41bp 1 0.590231050225396 1 0.491238653659821 experiment 0.819537899549208 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956685 chrX:64956684 synonymous SNV . 0 20 hm5C_associated_SNPs_42285 0 0 1 0 1 MSN chrX:64956657 3'AG 64956657 Downstream 28bp
chrX 64956684 64956684 1 + G A UCEC 64956695 + 64956675 64956715 41 GAAGAAGAAGCGTGAAATGGCAGAGAAGGAGAAAGAGAAGA GAAGAAGAAACGTGAAATGGCAGAGAAGGAGAAAGAGAAGA < 41bp 1 0.475967106842268 1 0.380179107189178 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956695 chrX:64956684 synonymous SNV . 0 10 hm5C_associated_SNPs_42286 0 0 1 0 1 MSN chrX:64956657 3'AG 64956657 Downstream 28bp
chr9 79996923 79996923 1 + C T UCEC 79996920 + 79996900 79996940 41 AGACTTCTGAAGTGGAGAGTCTGCGACCTCCTCGGTTCTTC AGACTTCTGAAGTGGAGAGTCTGTGACCTCCTCGGTTCTTC < 41bp 1 0.257815881603681 1 0.37711375951767 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VPS13A ENSG00000197969 CDS Human protein_coding chr9:79996920 chr9:79996923 stopgain 0.980 1 24 hm5C_associated_SNPs_42288 0 0 1 0 2 VPS13A chr9:79996892 3'AG 79996892 Downstream 32bp
chr9 79996923 79996923 1 + C T UCEC 79996920 + 79996900 79996940 41 AGACTTCTGAAGTGGAGAGTCTGCGACCTCCTCGGTTCTTC AGACTTCTGAAGTGGAGAGTCTGTGACCTCCTCGGTTCTTC < 41bp 1 0.257815881603681 1 0.37711375951767 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VPS13A ENSG00000197969 CDS Human protein_coding chr9:79996920 chr9:79996923 stopgain 0.980 1 24 hm5C_associated_SNPs_42288 0 0 1 0 2 VPS13A chr9:79997003 5'GT 79997003 Upstream 81bp
chr6 18213974 18213974 1 + C T UCEC 18213957 + 18213937 18213977 41 TGACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAG TGACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGTGAG < 41bp 1 0.413399859580966 1 0.247388541698456 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213957 chr6:18213974 stopgain 0.958 0 38 hm5C_associated_SNPs_42289 0 0 1 0 2 KDM1B chr6:18213887 3'AG 18213887 Downstream 88bp
chr6 18213974 18213974 1 + C T UCEC 18213957 + 18213937 18213977 41 TGACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAG TGACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGTGAG < 41bp 1 0.413399859580966 1 0.247388541698456 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213957 chr6:18213974 stopgain 0.958 0 38 hm5C_associated_SNPs_42289 0 0 1 0 2 KDM1B chr6:18214012 5'GT 18214012 Upstream 39bp
chr6 18213974 18213974 1 + C T UCEC 18213959 + 18213939 18213979 41 ACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAGGG ACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGTGAGGG < 41bp 1 0.434244310918233 1 0.515890896320343 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213959 chr6:18213974 stopgain 0.958 0 36 hm5C_associated_SNPs_42290 0 0 1 0 2 KDM1B chr6:18213887 3'AG 18213887 Downstream 88bp
chr6 18213974 18213974 1 + C T UCEC 18213959 + 18213939 18213979 41 ACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAGGG ACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGTGAGGG < 41bp 1 0.434244310918233 1 0.515890896320343 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213959 chr6:18213974 stopgain 0.958 0 36 hm5C_associated_SNPs_42290 0 0 1 0 2 KDM1B chr6:18214012 5'GT 18214012 Upstream 39bp
chr19 18975039 18975039 1 + G A UCEC 18975023 + 18975003 18975043 41 ATGTATGATGCCCGGGAGGCCATCATCCCAGGCTCCGTCTA ATGTATGATGCCCGGGAGGCCATCATCCCAGGCTCCATCTA < 41bp 1 0.477849467455284 1 0.0728333592414856 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18975023 chr19:18975039 nonsynonymous SNV 0.878 2 37 hm5C_associated_SNPs_42292 0 0 1 0 1 UPF1 chr19:18974979 3'AG 18974979 Downstream 61bp
chr21 30411818 30411818 1 + G T UCEC 30411804 + 30411784 30411824 41 CTTTTTGTTTTTCTCTAGAGCAGTGCGGTTTAAAGGCTATC CTTTTTGTTTTTCTCTAGAGCAGTGCGGTTTAAATGCTATC < 41bp 1 0.268907452531764 1 0.148191779851913 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP16 ENSG00000156256 CDS Human protein_coding chr21:30411804 chr21:30411818 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_42293 0 0 1 0 2 USP16 chr21:30411802 3'AG 30411802 Downstream 17bp
chr21 30411818 30411818 1 + G T UCEC 30411804 + 30411784 30411824 41 CTTTTTGTTTTTCTCTAGAGCAGTGCGGTTTAAAGGCTATC CTTTTTGTTTTTCTCTAGAGCAGTGCGGTTTAAATGCTATC < 41bp 1 0.268907452531764 1 0.148191779851913 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP16 ENSG00000156256 CDS Human protein_coding chr21:30411804 chr21:30411818 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_42293 0 0 1 0 2 USP16 chr21:30411889 5'GT 30411889 Upstream 72bp
chr2 114688909 114688909 1 + G T UCEC 114688918 + 114688898 114688938 41 TCCAGAAAACAGGGAATATACTGCTGAAATAATGTTTGAGT TCCAGAAAACATGGAATATACTGCTGAAATAATGTTTGAGT < 41bp 1 0.650058020560099 1 0.107877045869827 experiment 0.699883958879803 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACTR3 ENSG00000115091 CDS Human protein_coding chr2:114688918 chr2:114688909 nonsynonymous SNV 1.000 5 12 hm5C_associated_SNPs_42294 0 0 1 0 2 ACTR3 chr2:114688878 3'AG 114688878 Downstream 32bp
chr2 114688909 114688909 1 + G T UCEC 114688918 + 114688898 114688938 41 TCCAGAAAACAGGGAATATACTGCTGAAATAATGTTTGAGT TCCAGAAAACATGGAATATACTGCTGAAATAATGTTTGAGT < 41bp 1 0.650058020560099 1 0.107877045869827 experiment 0.699883958879803 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACTR3 ENSG00000115091 CDS Human protein_coding chr2:114688918 chr2:114688909 nonsynonymous SNV 1.000 5 12 hm5C_associated_SNPs_42294 0 0 1 0 2 ACTR3 chr2:114688973 5'GT 114688973 Upstream 65bp
chr7 44741197 44741197 1 + T G UCEC 44741191 + 44741171 44741211 41 GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC GCGCCACCCCGAGGCCAGATCCAGCTGTGATGAGATGCTTC < 41bp 1 0.185182610320938 1 0.455376803874969 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44741191 chr7:44741197 nonsynonymous SNV 0.999 2 27 hm5C_associated_SNPs_42299 0 0 1 0 2 OGDH chr7:44741142 3'AG 44741142 Downstream 56bp
chr7 44741197 44741197 1 + T G UCEC 44741191 + 44741171 44741211 41 GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC GCGCCACCCCGAGGCCAGATCCAGCTGTGATGAGATGCTTC < 41bp 1 0.185182610320938 1 0.455376803874969 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44741191 chr7:44741197 nonsynonymous SNV 0.999 2 27 hm5C_associated_SNPs_42299 0 0 1 0 2 OGDH chr7:44741214 5'GT 44741214 Upstream 18bp
chr12 1517357 1517357 1 + G A UCEC 1517370 + 1517350 1517390 41 CGAGGATGACCACTTCAAATCCTCCCATTCCAATCAAACAA CGAGGATAACCACTTCAAATCCTCCCATTCCAATCAAACAA < 41bp 1 0.0243435127300527 1 0.101734936237335 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ERC1 ENSG00000082805 CDS Human protein_coding chr12:1517370 chr12:1517357 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_42301 0 0 1 0 2 ERC1 chr12:1517315 3'AG 1517315 Downstream 43bp
chr12 1517357 1517357 1 + G A UCEC 1517370 + 1517350 1517390 41 CGAGGATGACCACTTCAAATCCTCCCATTCCAATCAAACAA CGAGGATAACCACTTCAAATCCTCCCATTCCAATCAAACAA < 41bp 1 0.0243435127300527 1 0.101734936237335 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ERC1 ENSG00000082805 CDS Human protein_coding chr12:1517370 chr12:1517357 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_42301 0 0 1 0 2 ERC1 chr12:1517413 5'GT 1517413 Upstream 57bp
chr7 2419058 2419058 1 + G A UCEC 2419038 + 2419018 2419058 41 TGTCCCCTCAGGGGTGGACACTGACGAGCTGGACAGCAACG TGTCCCCTCAGGGGTGGACACTGACGAGCTGGACAGCAACA < 41bp 1 0.444024365945681 1 0.0538598895072937 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2419038 chr7:2419058 nonsynonymous SNV 0.996 3 41 hm5C_associated_SNPs_42302 0 0 1 0 2 EIF3B chr7:2419029 3'AG 2419029 Downstream 30bp
chr7 2419058 2419058 1 + G A UCEC 2419038 + 2419018 2419058 41 TGTCCCCTCAGGGGTGGACACTGACGAGCTGGACAGCAACG TGTCCCCTCAGGGGTGGACACTGACGAGCTGGACAGCAACA < 41bp 1 0.444024365945681 1 0.0538598895072937 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2419038 chr7:2419058 nonsynonymous SNV 0.996 3 41 hm5C_associated_SNPs_42302 0 0 1 0 2 EIF3B chr7:2419146 5'GT 2419146 Upstream 89bp
chr7 2419058 2419058 1 + G A UCEC 2419051 + 2419031 2419071 41 GTGGACACTGACGAGCTGGACAGCAACGTGGACGACTGGGA GTGGACACTGACGAGCTGGACAGCAACATGGACGACTGGGA < 41bp 1 0.701294548143927 1 0.248336851596832 experiment 0.597410903712147 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2419051 chr7:2419058 nonsynonymous SNV 0.996 3 28 hm5C_associated_SNPs_42303 0 0 1 0 2 EIF3B chr7:2419029 3'AG 2419029 Downstream 30bp
chr7 2419058 2419058 1 + G A UCEC 2419051 + 2419031 2419071 41 GTGGACACTGACGAGCTGGACAGCAACGTGGACGACTGGGA GTGGACACTGACGAGCTGGACAGCAACATGGACGACTGGGA < 41bp 1 0.701294548143927 1 0.248336851596832 experiment 0.597410903712147 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2419051 chr7:2419058 nonsynonymous SNV 0.996 3 28 hm5C_associated_SNPs_42303 0 0 1 0 2 EIF3B chr7:2419146 5'GT 2419146 Upstream 89bp
chr2 233674449 233674449 1 + G A UCEC 233674436 + 233674416 233674456 41 CACTTCATTCCTAGGGAGAGCTGGACCAGGAACGACTGACC CACTTCATTCCTAGGGAGAGCTGGACCAGGAACAACTGACC < 41bp 1 0.503607594642972 1 0.589686989784241 experiment 0.992784810714057 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233674436 chr2:233674449 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_42304 0 0 1 0 2 GIGYF2 chr2:233674430 3'AG 233674430 Downstream 20bp
chr2 233674449 233674449 1 + G A UCEC 233674436 + 233674416 233674456 41 CACTTCATTCCTAGGGAGAGCTGGACCAGGAACGACTGACC CACTTCATTCCTAGGGAGAGCTGGACCAGGAACAACTGACC < 41bp 1 0.503607594642972 1 0.589686989784241 experiment 0.992784810714057 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233674436 chr2:233674449 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_42304 0 0 1 0 2 GIGYF2 chr2:233674521 5'GT 233674521 Upstream 73bp
chr2 233674449 233674449 1 + G A UCEC 233674441 + 233674421 233674461 41 CATTCCTAGGGAGAGCTGGACCAGGAACGACTGACCAGGCA CATTCCTAGGGAGAGCTGGACCAGGAACAACTGACCAGGCA < 41bp 1 0.248580487618402 1 0.306059718132019 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233674441 chr2:233674449 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_42305 0 0 1 0 2 GIGYF2 chr2:233674430 3'AG 233674430 Downstream 20bp
chr2 233674449 233674449 1 + G A UCEC 233674441 + 233674421 233674461 41 CATTCCTAGGGAGAGCTGGACCAGGAACGACTGACCAGGCA CATTCCTAGGGAGAGCTGGACCAGGAACAACTGACCAGGCA < 41bp 1 0.248580487618402 1 0.306059718132019 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233674441 chr2:233674449 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_42305 0 0 1 0 2 GIGYF2 chr2:233674521 5'GT 233674521 Upstream 73bp
chr3 49758470 49758470 1 + C T UCEC 49758471 + 49758451 49758491 41 AGCCCACCAGTGAGGAGGACCTCTGCCCCATCTGCTATGCC AGCCCACCAGTGAGGAGGATCTCTGCCCCATCTGCTATGCC < 41bp 1 0.149155016941866 1 0.149001151323318 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49758471 chr3:49758470 synonymous SNV . 0 20 hm5C_associated_SNPs_42306 0 0 0 0 2 RNF123 chr3:49758453 3'AG 49758453 Downstream 18bp
chr3 49758470 49758470 1 + C T UCEC 49758471 + 49758451 49758491 41 AGCCCACCAGTGAGGAGGACCTCTGCCCCATCTGCTATGCC AGCCCACCAGTGAGGAGGATCTCTGCCCCATCTGCTATGCC < 41bp 1 0.149155016941866 1 0.149001151323318 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49758471 chr3:49758470 synonymous SNV . 0 20 hm5C_associated_SNPs_42306 0 0 0 0 2 RNF123 chr3:49758538 5'GT 49758538 Upstream 69bp
chr17 4923887 4923887 1 + G A UCEC 4923870 + 4923850 4923890 41 TGGAACGGGAACGAGGGGTCCCCCCACCCCCAGGACCGCCC TGGAACGGGAACGAGGGGTCCCCCCACCCCCAGGACCACCC < 41bp 1 0.129605444230268 1 0.0812363028526306 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4923870 chr17:4923887 synonymous SNV . 0 38 hm5C_associated_SNPs_42307 0 0 1 0 1 KIF1C chr17:4923973 5'GT 4923973 Upstream 87bp
chr3 196304327 196304327 1 + C T UCEC 196304336 + 196304316 196304356 41 CTTTTTAGATACGTGCTTTTCAACATGCCTTCAGCACTAAT CTTTTTAGATATGTGCTTTTCAACATGCCTTCAGCACTAAT < 41bp 1 0.577540780961039 1 0.622923314571381 experiment 0.844918438077921 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO45 ENSG00000174013 CDS Human protein_coding chr3:196304336 chr3:196304327 nonsynonymous SNV 0.990 4 12 hm5C_associated_SNPs_42308 0 0 0 0 1 FBXO45 chr3:196304324 3'AG 196304324 Downstream 4bp
chr17 15929903 15929903 1 + G A UCEC 15929902 + 15929882 15929922 41 CTACCCTGGATGCACAGGGCCGCTTTGATGAGGCCTATATT CTACCCTGGATGCACAGGGCCACTTTGATGAGGCCTATATT < 41bp 1 0.139737762823942 1 0.0243609249591827 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15929902 chr17:15929903 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_42309 0 0 1 0 1 TTC19 chr17:15929854 3'AG 15929854 Downstream 50bp
chr12 109637345 109637345 1 + C T UCEC 109637339 + 109637319 109637359 41 GGCCACGTTGAGGCTGGGAGCAGCTACGCTGAGATGGAGGT GGCCACGTTGAGGCTGGGAGCAGCTATGCTGAGATGGAGGT < 41bp 1 0.288025255708515 1 0.575288116931915 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109637339 chr12:109637345 synonymous SNV . 0 27 hm5C_associated_SNPs_42310 0 0 1 0 1 ACACB chr12:109637357 5'GT 109637357 Upstream 13bp
chr15 66777502 66777502 1 + C T UCEC 66777521 + 66777501 66777541 41 GCCAAGGACCCCCGGGAGGCCCCTTAGCTGTGAGTAGCCTG GTCAAGGACCCCCGGGAGGCCCCTTAGCTGTGAGTAGCCTG < 41bp 1 0.151963513627113 1 0.114430218935013 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP2K1 ENSG00000169032 CDS Human protein_coding chr15:66777521 chr15:66777502 nonsynonymous SNV 0.979 1 2 hm5C_associated_SNPs_42311 0 0 1 0 1 MAP2K1 chr15:66777529 5'GT 66777529 Upstream 28bp
chr10 75529149 75529149 1 + C T UCEC 75529135 + 75529115 75529155 41 TTTACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCAT TTTACACCAGCTGTGCAGGGCAGCGTCGGCTCCGTATCCAT < 41bp 1 0.504712534394928 1 0.0882059037685394 experiment 0.990574931210143 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529135 chr10:75529149 synonymous SNV . 0 35 hm5C_associated_SNPs_42312 0 0 1 0 2 SEC24C chr10:75529105 3'AG 75529105 Downstream 45bp
chr10 75529149 75529149 1 + C T UCEC 75529135 + 75529115 75529155 41 TTTACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCAT TTTACACCAGCTGTGCAGGGCAGCGTCGGCTCCGTATCCAT < 41bp 1 0.504712534394928 1 0.0882059037685394 experiment 0.990574931210143 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529135 chr10:75529149 synonymous SNV . 0 35 hm5C_associated_SNPs_42312 0 0 1 0 2 SEC24C chr10:75529243 5'GT 75529243 Upstream 95bp
chr10 75529149 75529149 1 + C T UCEC 75529138 + 75529118 75529158 41 ACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCATAAT ACACCAGCTGTGCAGGGCAGCGTCGGCTCCGTATCCATAAT < 41bp 1 0.455252246171255 1 0.262603431940079 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529138 chr10:75529149 synonymous SNV . 0 32 hm5C_associated_SNPs_42313 0 0 1 0 2 SEC24C chr10:75529105 3'AG 75529105 Downstream 45bp
chr10 75529149 75529149 1 + C T UCEC 75529138 + 75529118 75529158 41 ACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCATAAT ACACCAGCTGTGCAGGGCAGCGTCGGCTCCGTATCCATAAT < 41bp 1 0.455252246171255 1 0.262603431940079 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529138 chr10:75529149 synonymous SNV . 0 32 hm5C_associated_SNPs_42313 0 0 1 0 2 SEC24C chr10:75529243 5'GT 75529243 Upstream 95bp
chr10 75529149 75529149 1 + C T UCEC 75529146 + 75529126 75529166 41 TGTGCAGGGCAGCGTCGGCTCCGCATCCATAATCTGGCCCT TGTGCAGGGCAGCGTCGGCTCCGTATCCATAATCTGGCCCT < 41bp 1 0.574930075181395 1 0.0490468144416809 experiment 0.850139849637209 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529146 chr10:75529149 synonymous SNV . 0 24 hm5C_associated_SNPs_42314 0 0 1 0 2 SEC24C chr10:75529105 3'AG 75529105 Downstream 45bp
chr10 75529149 75529149 1 + C T UCEC 75529146 + 75529126 75529166 41 TGTGCAGGGCAGCGTCGGCTCCGCATCCATAATCTGGCCCT TGTGCAGGGCAGCGTCGGCTCCGTATCCATAATCTGGCCCT < 41bp 1 0.574930075181395 1 0.0490468144416809 experiment 0.850139849637209 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529146 chr10:75529149 synonymous SNV . 0 24 hm5C_associated_SNPs_42314 0 0 1 0 2 SEC24C chr10:75529243 5'GT 75529243 Upstream 95bp
chr1 6692462 6692462 1 + G A UCEC 6692470 + 6692450 6692490 41 GGTCCTCCCTGAGGCGGGGGCCGGAGAGGACAGTCCTGGGA GGTCCTCCCTGAAGCGGGGGCCGGAGAGGACAGTCCTGGGA < 41bp 1 0.663986538610059 1 0.576979100704193 experiment 0.672026922779881 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THAP3 ENSG00000041988 CDS Human protein_coding chr1:6692470 chr1:6692462 synonymous SNV . 0 13 hm5C_associated_SNPs_42315 0 0 1 0 3 THAP3 chr1:6692430 3'AG 6692430 Downstream 33bp
chr1 6692462 6692462 1 + G A UCEC 6692470 + 6692450 6692490 41 GGTCCTCCCTGAGGCGGGGGCCGGAGAGGACAGTCCTGGGA GGTCCTCCCTGAAGCGGGGGCCGGAGAGGACAGTCCTGGGA < 41bp 1 0.663986538610059 1 0.576979100704193 experiment 0.672026922779881 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THAP3 ENSG00000041988 CDS Human protein_coding chr1:6692470 chr1:6692462 synonymous SNV . 0 13 hm5C_associated_SNPs_42315 0 0 1 0 3 THAP3 chr1:6692451 3'AG 6692451 Downstream 12bp
chr1 6692462 6692462 1 + G A UCEC 6692470 + 6692450 6692490 41 GGTCCTCCCTGAGGCGGGGGCCGGAGAGGACAGTCCTGGGA GGTCCTCCCTGAAGCGGGGGCCGGAGAGGACAGTCCTGGGA < 41bp 1 0.663986538610059 1 0.576979100704193 experiment 0.672026922779881 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THAP3 ENSG00000041988 CDS Human protein_coding chr1:6692470 chr1:6692462 synonymous SNV . 0 13 hm5C_associated_SNPs_42315 0 0 1 0 3 THAP3 chr1:6692555 5'GT 6692555 Upstream 94bp
chr2 32824931 32824931 1 + C T UCEC 32824918 + 32824898 32824938 41 TCTTGTGAATCTAGAGACAACTGGTGGTCATAGCGTGCGAT TCTTGTGAATCTAGAGACAACTGGTGGTCATAGTGTGCGAT < 41bp 1 0.216585688402764 1 0.379756271839142 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32824918 chr2:32824931 synonymous SNV . 0 34 hm5C_associated_SNPs_42316 0 0 1 0 1 BIRC6 chr2:32824967 5'GT 32824967 Upstream 37bp
chr12 9070341 9070341 1 + G A UCEC 9070333 + 9070313 9070353 41 GGGAGTTCTAGCTCAGGGGGCAGCTCTCGGCCCCAGATAGC GGGAGTTCTAGCTCAGGGGGCAGCTCTCAGCCCCAGATAGC < 41bp 1 0.197131186086904 1 0.169447511434555 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHC1 ENSG00000111752 CDS Human protein_coding chr12:9070333 chr12:9070341 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_42317 0 0 0 0 1 PHC1 chr12:9070387 5'GT 9070387 Upstream 47bp
chr9 131088062 131088062 1 + C T UCEC 131088068 + 131088048 131088088 41 TGCCTTTCAGGGAGCGTCCCCGGATTTCGACATCCACCCTC TGCCTTTCAGGGAGTGTCCCCGGATTTCGACATCCACCCTC < 41bp 1 0.766647200549678 1 0.45905527472496 experiment 0.466705598900644 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COQ4 ENSG00000167113 CDS Human protein_coding chr9:131088068 chr9:131088062 nonsynonymous SNV 0.894 4 15 hm5C_associated_SNPs_42318 0 0 1 0 2 COQ4 chr9:131088058 3'AG 131088058 Downstream 5bp
chr9 131088062 131088062 1 + C T UCEC 131088068 + 131088048 131088088 41 TGCCTTTCAGGGAGCGTCCCCGGATTTCGACATCCACCCTC TGCCTTTCAGGGAGTGTCCCCGGATTTCGACATCCACCCTC < 41bp 1 0.766647200549678 1 0.45905527472496 experiment 0.466705598900644 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COQ4 ENSG00000167113 CDS Human protein_coding chr9:131088068 chr9:131088062 nonsynonymous SNV 0.894 4 15 hm5C_associated_SNPs_42318 0 0 1 0 2 COQ4 chr9:131088160 5'GT 131088160 Upstream 99bp
chr10 75867085 75867085 1 + G A UCEC 75867081 + 75867061 75867101 41 ACCTCAGGAGCCTGACTTCCCGCCGCCTCCACCAGACCTTG ACCTCAGGAGCCTGACTTCCCGCCACCTCCACCAGACCTTG < 41bp 1 0.78810013403952 1 0.378969103097916 experiment 0.42379973192096 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75867081 chr10:75867085 synonymous SNV . 0 25 hm5C_associated_SNPs_42319 0 0 1 0 2 VCL chr10:75866988 3'AG 75866988 Downstream 98bp
chr10 75867085 75867085 1 + G A UCEC 75867081 + 75867061 75867101 41 ACCTCAGGAGCCTGACTTCCCGCCGCCTCCACCAGACCTTG ACCTCAGGAGCCTGACTTCCCGCCACCTCCACCAGACCTTG < 41bp 1 0.78810013403952 1 0.378969103097916 experiment 0.42379973192096 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75867081 chr10:75867085 synonymous SNV . 0 25 hm5C_associated_SNPs_42319 0 0 1 0 2 VCL chr10:75867112 5'GT 75867112 Upstream 28bp
chr5 154173687 154173687 1 + G A UCEC 154173686 + 154173666 154173706 41 TTGACTACCAGTTTGGCTACCGAAAGTTTGATGGTGTGGAG TTGACTACCAGTTTGGCTACCAAAAGTTTGATGGTGTGGAG < 41bp 1 0.541807779890474 1 0.547685742378235 experiment 0.916384440219052 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154173686 chr5:154173687 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_42320 0 0 1 0 1 LARP1 chr5:154173660 3'AG 154173660 Downstream 28bp
chr8 145166601 145166601 1 + G A UCEC 145166598 + 145166578 145166618 41 TGAGGCTGGGGCTAGTGGTCCCAGCAGCCCAGCCCCCACCC TGAGGCTGGGGCTAGTGGTCCCAACAGCCCAGCCCCCACCC < 41bp 1 0.101877375550067 1 0.201917678117752 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166598 chr8:145166601 nonsynonymous SNV 0.157 1 24 hm5C_associated_SNPs_42321 0 0 0 0 2 WDR97 chr8:145166535 3'AG 145166535 Downstream 67bp
chr8 145166601 145166601 1 + G A UCEC 145166598 + 145166578 145166618 41 TGAGGCTGGGGCTAGTGGTCCCAGCAGCCCAGCCCCCACCC TGAGGCTGGGGCTAGTGGTCCCAACAGCCCAGCCCCCACCC < 41bp 1 0.101877375550067 1 0.201917678117752 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166598 chr8:145166601 nonsynonymous SNV 0.157 1 24 hm5C_associated_SNPs_42321 0 0 0 0 2 WDR97 chr8:145166684 5'GT 145166684 Upstream 84bp
chr8 145166601 145166601 1 + G A UCEC 145166599 + 145166579 145166619 41 GAGGCTGGGGCTAGTGGTCCCAGCAGCCCAGCCCCCACCCT GAGGCTGGGGCTAGTGGTCCCAACAGCCCAGCCCCCACCCT < 41bp 1 0.619139450286817 1 0.353998124599457 experiment 0.761721099426366 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166599 chr8:145166601 nonsynonymous SNV 0.157 1 23 hm5C_associated_SNPs_42322 0 0 0 0 2 WDR97 chr8:145166535 3'AG 145166535 Downstream 67bp
chr8 145166601 145166601 1 + G A UCEC 145166599 + 145166579 145166619 41 GAGGCTGGGGCTAGTGGTCCCAGCAGCCCAGCCCCCACCCT GAGGCTGGGGCTAGTGGTCCCAACAGCCCAGCCCCCACCCT < 41bp 1 0.619139450286817 1 0.353998124599457 experiment 0.761721099426366 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166599 chr8:145166601 nonsynonymous SNV 0.157 1 23 hm5C_associated_SNPs_42322 0 0 0 0 2 WDR97 chr8:145166684 5'GT 145166684 Upstream 84bp
chr8 145166601 145166601 1 + G A UCEC 145166614 + 145166594 145166634 41 GGTCCCAGCAGCCCAGCCCCCACCCTCCTGGCAGCAGCGCC GGTCCCAACAGCCCAGCCCCCACCCTCCTGGCAGCAGCGCC < 41bp 1 0.185873384610329 1 0.356161296367645 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166614 chr8:145166601 nonsynonymous SNV 0.157 1 8 hm5C_associated_SNPs_42323 0 0 0 0 2 WDR97 chr8:145166535 3'AG 145166535 Downstream 67bp
chr8 145166601 145166601 1 + G A UCEC 145166614 + 145166594 145166634 41 GGTCCCAGCAGCCCAGCCCCCACCCTCCTGGCAGCAGCGCC GGTCCCAACAGCCCAGCCCCCACCCTCCTGGCAGCAGCGCC < 41bp 1 0.185873384610329 1 0.356161296367645 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166614 chr8:145166601 nonsynonymous SNV 0.157 1 8 hm5C_associated_SNPs_42323 0 0 0 0 2 WDR97 chr8:145166684 5'GT 145166684 Upstream 84bp
chr9 6990452 6990452 1 + C T UCEC 6990461 + 6990441 6990481 41 CTAAGAGTTGGCGCCATCCACTTAGCAGGCCTCCAGCAAGA CTAAGAGTTGGTGCCATCCACTTAGCAGGCCTCCAGCAAGA < 41bp 1 0.217246389663854 1 0.173576354980469 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM4C ENSG00000107077 CDS Human protein_coding chr9:6990461 chr9:6990452 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_42324 0 0 1 0 2 KDM4C chr9:6990416 3'AG 6990416 Downstream 37bp
chr9 6990452 6990452 1 + C T UCEC 6990461 + 6990441 6990481 41 CTAAGAGTTGGCGCCATCCACTTAGCAGGCCTCCAGCAAGA CTAAGAGTTGGTGCCATCCACTTAGCAGGCCTCCAGCAAGA < 41bp 1 0.217246389663854 1 0.173576354980469 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM4C ENSG00000107077 CDS Human protein_coding chr9:6990461 chr9:6990452 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_42324 0 0 1 0 2 KDM4C chr9:6990524 5'GT 6990524 Upstream 73bp
chr2 28999809 28999809 1 + C T UCEC 28999796 + 28999776 28999816 41 TGTATCAAGTCTCGGGAGATCTTTCTCAGCCAGCCTATTCT TGTATCAAGTCTCGGGAGATCTTTCTCAGCCAGTCTATTCT < 41bp 1 0.1200287836208 1 0.0815187394618988 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1CB ENSG00000213639 CDS Human protein_coding chr2:28999796 chr2:28999809 nonsynonymous SNV 0.999 3 34 hm5C_associated_SNPs_42327 0 0 1 0 2 PPP1CB chr2:28999717 3'AG 28999717 Downstream 93bp
chr2 28999809 28999809 1 + C T UCEC 28999796 + 28999776 28999816 41 TGTATCAAGTCTCGGGAGATCTTTCTCAGCCAGCCTATTCT TGTATCAAGTCTCGGGAGATCTTTCTCAGCCAGTCTATTCT < 41bp 1 0.1200287836208 1 0.0815187394618988 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1CB ENSG00000213639 CDS Human protein_coding chr2:28999796 chr2:28999809 nonsynonymous SNV 0.999 3 34 hm5C_associated_SNPs_42327 0 0 1 0 2 PPP1CB chr2:28999848 5'GT 28999848 Upstream 40bp
chr15 42105212 42105212 1 + G A UCEC 42105224 + 42105204 42105244 41 GGAAAAAAGGCGGACAGTACCTTCTGCATCACGTCCTCAGG GGAAAAAAAGCGGACAGTACCTTCTGCATCACGTCCTCAGG < 41bp 1 0.232518112605363 1 0.0941851735115051 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42105224 chr15:42105212 synonymous SNV . 0 9 hm5C_associated_SNPs_42328 0 0 0 0 1 MAPKBP1 chr15:42105117 3'AG 42105117 Downstream 96bp
chr2 74315074 74315074 1 + C T UCEC 74315067 + 74315047 74315087 41 CTCATCCTGGCCTGGGAGGGCATTCCCCGTAGCCTCGGAGA CTCATCCTGGCCTGGGAGGGCATTCCCTGTAGCCTCGGAGA < 41bp 1 0.0234542568599432 1 0.0929228663444519 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74315067 chr2:74315074 nonsynonymous SNV 0.997 3 28 hm5C_associated_SNPs_42330 0 0 1 0 1 TET3 chr2:74315165 5'GT 74315165 Upstream 92bp
chr1 183072765 183072765 1 + C T UCEC 183072762 + 183072742 183072782 41 ACTTTGACAATAGCCCTGTGCTGCAGGTAAATTCTCACAGG ACTTTGACAATAGCCCTGTGCTGTAGGTAAATTCTCACAGG < 41bp 1 0.538171219489258 1 0.0764662325382233 experiment 0.923657561021484 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183072762 chr1:183072765 stopgain 0.997 1 24 hm5C_associated_SNPs_42331 0 0 1 0 1 LAMC1 chr1:183072767 5'GT 183072767 Upstream 3bp
chr4 7691275 7691275 1 + G A UCEC 7691293 + 7691273 7691313 41 GTGCACACCAAGGACACCGCCCCAGGCCTCATCATGGGTGC GTACACACCAAGGACACCGCCCCAGGCCTCATCATGGGTGC < 41bp 1 0.148654427417363 1 0.245269984006882 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SORCS2 ENSG00000184985 CDS Human protein_coding chr4:7691293 chr4:7691275 synonymous SNV . 0 3 hm5C_associated_SNPs_42332 0 0 0 0 2 SORCS2 chr4:7691213 3'AG 7691213 Downstream 63bp
chr4 7691275 7691275 1 + G A UCEC 7691293 + 7691273 7691313 41 GTGCACACCAAGGACACCGCCCCAGGCCTCATCATGGGTGC GTACACACCAAGGACACCGCCCCAGGCCTCATCATGGGTGC < 41bp 1 0.148654427417363 1 0.245269984006882 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SORCS2 ENSG00000184985 CDS Human protein_coding chr4:7691293 chr4:7691275 synonymous SNV . 0 3 hm5C_associated_SNPs_42332 0 0 0 0 2 SORCS2 chr4:7691315 5'GT 7691315 Upstream 41bp
chr12 51844694 51844694 1 + G A UCEC 51844686 + 51844666 51844706 41 GAACTCTGTATGTGGGAGTTCGGATGCCGCTTGGCCGGCAG GAACTCTGTATGTGGGAGTTCGGATGCCACTTGGCCGGCAG < 41bp 1 0.588292104165648 1 0.786007821559906 experiment 0.823415791668704 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A8 ENSG00000050438 CDS Human protein_coding chr12:51844686 chr12:51844694 synonymous SNV . 0 29 hm5C_associated_SNPs_42338 0 0 0 0 1 SLC4A8 chr12:51844660 3'AG 51844660 Downstream 35bp
chr22 42273319 42273319 1 + C A UCEC 42273332 + 42273312 42273352 41 TCCTGTGCCTCTCCTTTAACCCCCTGACTTCCCTGCTGCAG TCCTGTGACTCTCCTTTAACCCCCTGACTTCCCTGCTGCAG < 41bp 1 0.27274870768426 1 0.0247563421726227 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42273332 chr22:42273319 stopgain 1.000 1 8 hm5C_associated_SNPs_42340 0 0 1 0 1 SREBF2 chr22:42273233 3'AG 42273233 Downstream 87bp
chrX 41088594 41088594 1 + G A UCEC 41088595 + 41088575 41088615 41 GAATCACTATCAAAAAAGAGCATACCAGTGTATAAAATGTA GAATCACTATCAAAAAAGAACATACCAGTGTATAAAATGTA < 41bp 1 0.0070099614084932 1 0.0966778993606567 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41088595 chrX:41088594 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_42341 0 0 1 0 2 USP9X chrX:41088506 3'AG 41088506 Downstream 89bp
chrX 41088594 41088594 1 + G A UCEC 41088595 + 41088575 41088615 41 GAATCACTATCAAAAAAGAGCATACCAGTGTATAAAATGTA GAATCACTATCAAAAAAGAACATACCAGTGTATAAAATGTA < 41bp 1 0.0070099614084932 1 0.0966778993606567 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41088595 chrX:41088594 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_42341 0 0 1 0 2 USP9X chrX:41088662 5'GT 41088662 Upstream 69bp
chr1 2419117 2419117 1 + G A UCEC 2419119 + 2419099 2419139 41 AAGATCCTCTTCAAAGACGTCATTGAAACCATCAACAAATA AAGATCCTCTTCAAAGACATCATTGAAACCATCAACAAATA < 41bp 1 0.043921219559863 1 0.0467396676540375 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2419119 chr1:2419117 nonsynonymous SNV 0.979 4 19 hm5C_associated_SNPs_42342 0 0 0 0 2 PLCH2 chr1:2419037 3'AG 2419037 Downstream 81bp
chr1 2419117 2419117 1 + G A UCEC 2419119 + 2419099 2419139 41 AAGATCCTCTTCAAAGACGTCATTGAAACCATCAACAAATA AAGATCCTCTTCAAAGACATCATTGAAACCATCAACAAATA < 41bp 1 0.043921219559863 1 0.0467396676540375 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2419119 chr1:2419117 nonsynonymous SNV 0.979 4 19 hm5C_associated_SNPs_42342 0 0 0 0 2 PLCH2 chr1:2419157 5'GT 2419157 Upstream 41bp
chr3 190347218 190347218 1 + C T UCEC 190347220 + 190347200 190347240 41 ACCTCTGAGGATCTCAAGCGCAGCTATGTCTGTCATGCTAG ACCTCTGAGGATCTCAAGTGCAGCTATGTCTGTCATGCTAG < 41bp 1 0.403690360161975 1 0.0937489569187164 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient IL1RAP ENSG00000196083 CDS Human protein_coding chr3:190347220 chr3:190347218 nonsynonymous SNV 0.994 4 19 hm5C_associated_SNPs_42343 0 0 1 0 2 IL1RAP chr3:190347139 3'AG 190347139 Downstream 80bp
chr3 190347218 190347218 1 + C T UCEC 190347220 + 190347200 190347240 41 ACCTCTGAGGATCTCAAGCGCAGCTATGTCTGTCATGCTAG ACCTCTGAGGATCTCAAGTGCAGCTATGTCTGTCATGCTAG < 41bp 1 0.403690360161975 1 0.0937489569187164 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient IL1RAP ENSG00000196083 CDS Human protein_coding chr3:190347220 chr3:190347218 nonsynonymous SNV 0.994 4 19 hm5C_associated_SNPs_42343 0 0 1 0 2 IL1RAP chr3:190347287 5'GT 190347287 Upstream 70bp
chr8 23147910 23147910 1 + G A UCEC 23147890 + 23147870 23147910 41 AGAGTCTGTTGGAGAAGAGGCTGGTGGCAGAGGAGGAAGAG AGAGTCTGTTGGAGAAGAGGCTGGTGGCAGAGGAGGAAGAA < 41bp 1 0.641896120537583 1 0.45251053571701 experiment 0.716207758924834 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control R3HCC1 ENSG00000104679 CDS Human protein_coding chr8:23147890 chr8:23147910 synonymous SNV . 0 41 hm5C_associated_SNPs_42344 0 0 1 0 1 R3HCC1 chr8:23147982 5'GT 23147982 Upstream 73bp
chr8 23147910 23147910 1 + G A UCEC 23147913 + 23147893 23147933 41 GTGGCAGAGGAGGAAGAGGACGAAGAGGAGGTGGAAGAGGA GTGGCAGAGGAGGAAGAAGACGAAGAGGAGGTGGAAGAGGA < 41bp 1 0.699949057013783 1 0.628674864768982 experiment 0.600101885972434 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control R3HCC1 ENSG00000104679 CDS Human protein_coding chr8:23147913 chr8:23147910 synonymous SNV . 0 18 hm5C_associated_SNPs_42345 0 0 1 0 1 R3HCC1 chr8:23147982 5'GT 23147982 Upstream 73bp
chr16 29994950 29994950 1 + C T UCEC 29994940 + 29994920 29994960 41 TCCGCCCGCCGCCGGGCCTACTGCCGTAACCGAGACCACTT TCCGCCCGCCGCCGGGCCTACTGCCGTAACTGAGACCACTT < 41bp 1 0.537258506029519 1 0.0906435549259186 experiment 0.925482987940962 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994940 chr16:29994950 stopgain 1.000 1 31 hm5C_associated_SNPs_42350 0 0 1 0 1 TAOK2 chr16:29994985 5'GT 29994985 Upstream 36bp
chr9 131247123 131247123 1 + C T UCEC 131247109 + 131247089 131247129 41 CCATCCGAGCCCAGAAGGAGCGAGCCGAGAAGAGCGAGGAG CCATCCGAGCCCAGAAGGAGCGAGCCGAGAAGAGTGAGGAG < 41bp 1 0.417104763801387 1 0.447435587644577 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ODF2 ENSG00000136811 CDS Human protein_coding chr9:131247109 chr9:131247123 synonymous SNV . 0 35 hm5C_associated_SNPs_42351 0 0 1 0 1 ODF2 chr9:131247165 5'GT 131247165 Upstream 43bp
chr1 160323974 160323974 1 + C T UCEC 160323975 + 160323955 160323995 41 TGCTGTCATCCTCAGGAGGCCAAATCAGTCCCAGCCTCTCC TGCTGTCATCCTCAGGAGGTCAAATCAGTCCCAGCCTCTCC < 41bp 1 0.330312397236528 1 0.0885326862335205 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCSTN ENSG00000162736 CDS Human protein_coding chr1:160323975 chr1:160323974 nonsynonymous SNV 0.054 0 20 hm5C_associated_SNPs_42353 0 0 1 0 1 NCSTN chr1:160323908 3'AG 160323908 Downstream 67bp
chr17 4859429 4859429 1 + C T UCEC 4859423 + 4859403 4859443 41 CAACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAG CAACCAGATCGGCTCGGTGACCGAATTGATCCAGGCGTGAG < 41bp 1 0.606991093167764 1 0.226066023111343 experiment 0.786017813664472 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859423 chr17:4859429 nonsynonymous SNV 0.747 2 27 hm5C_associated_SNPs_42354 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 68bp
chr17 4859429 4859429 1 + C T UCEC 4859423 + 4859403 4859443 41 CAACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAG CAACCAGATCGGCTCGGTGACCGAATTGATCCAGGCGTGAG < 41bp 1 0.606991093167764 1 0.226066023111343 experiment 0.786017813664472 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859423 chr17:4859429 nonsynonymous SNV 0.747 2 27 hm5C_associated_SNPs_42354 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 10bp
chr17 4859429 4859429 1 + C T UCEC 4859424 + 4859404 4859444 41 AACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAGT AACCAGATCGGCTCGGTGACCGAATTGATCCAGGCGTGAGT < 41bp 1 0.46031046801608 1 0.720873236656189 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859424 chr17:4859429 nonsynonymous SNV 0.747 2 26 hm5C_associated_SNPs_42355 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 68bp
chr17 4859429 4859429 1 + C T UCEC 4859424 + 4859404 4859444 41 AACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAGT AACCAGATCGGCTCGGTGACCGAATTGATCCAGGCGTGAGT < 41bp 1 0.46031046801608 1 0.720873236656189 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859424 chr17:4859429 nonsynonymous SNV 0.747 2 26 hm5C_associated_SNPs_42355 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 10bp
chr6 168291633 168291633 1 + G T UCEC 168291650 + 168291630 168291670 41 AAAGGAGAGAGCTGACGGGTCTGGCTATGGCTCCACCCTTC AAATGAGAGAGCTGACGGGTCTGGCTATGGCTCCACCCTTC < 41bp 1 0.644429912940727 1 0.271682739257812 experiment 0.711140174118546 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168291650 chr6:168291633 nonsynonymous SNV 0.233 0 4 hm5C_associated_SNPs_42357 0 0 1 0 1 AFDN chr6:168291709 5'GT 168291709 Upstream 77bp
chr3 73113194 73113194 1 + C T UCEC 73113185 + 73113165 73113205 41 ATGGGCCTGGGACACCCAGGCCACTTAATCGACCAAAGGTT ATGGGCCTGGGACACCCAGGCCACTTAATTGACCAAAGGTT < 41bp 1 0.126708919517788 1 0.181844472885132 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP4R2 ENSG00000163605 CDS Human protein_coding chr3:73113185 chr3:73113194 stopgain 0.999 1 30 hm5C_associated_SNPs_42358 0 0 1 0 1 PPP4R2 chr3:73113154 3'AG 73113154 Downstream 41bp
chr3 73113194 73113194 1 + C T UCEC 73113186 + 73113166 73113206 41 TGGGCCTGGGACACCCAGGCCACTTAATCGACCAAAGGTTT TGGGCCTGGGACACCCAGGCCACTTAATTGACCAAAGGTTT < 41bp 1 0.127485359570854 1 0.0560333132743835 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP4R2 ENSG00000163605 CDS Human protein_coding chr3:73113186 chr3:73113194 stopgain 0.999 1 29 hm5C_associated_SNPs_42359 0 0 1 0 1 PPP4R2 chr3:73113154 3'AG 73113154 Downstream 41bp
chr7 150773121 150773121 1 + C A UCEC 150773103 + 150773083 150773123 41 CTGTCTCCGCCCCCCAGGTCCGGACCCTCCGTATGCACCTG CTGTCTCCGCCCCCCAGGTCCGGACCCTCCGTATGCACATG < 41bp 1 0.226338666360261 1 0.162856221199036 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150773103 chr7:150773121 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_42360 0 0 1 0 1 SLC4A2 chr7:150773100 3'AG 150773100 Downstream 22bp
chr4 186231893 186231893 1 + C T UCEC 186231908 + 186231888 186231928 41 GAATCCGAATCCTGGGAGGCCCTGCCTATGACCAGCAAGAG GAATCTGAATCCTGGGAGGCCCTGCCTATGACCAGCAAGAG < 41bp 1 0.0860752988770899 1 0.29104682803154 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX25 ENSG00000109762 CDS Human protein_coding chr4:186231908 chr4:186231893 stopgain 0.976 1 6 hm5C_associated_SNPs_42361 0 0 1 0 1 SNX25 chr4:186231970 5'GT 186231970 Upstream 78bp
chr7 100454587 100454587 1 + C T UCEC 100454584 + 100454564 100454604 41 CTGGGCCTTGTGGGTGGGGTCTGCACCCTGGGAGCCGGCCT CTGGGCCTTGTGGGTGGGGTCTGTACCCTGGGAGCCGGCCT < 41bp 1 0.598622859536744 1 0.420296132564545 experiment 0.802754280926512 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC12A9 ENSG00000146828 CDS Human protein_coding chr7:100454584 chr7:100454587 synonymous SNV . 0 24 hm5C_associated_SNPs_42362 0 0 0 0 1 SLC12A9 chr7:100454490 3'AG 100454490 Downstream 98bp
chr22 39824053 39824053 1 + C A UCEC 39824063 + 39824043 39824083 41 TACCCTGTGTCTGTGCCATACTCCAGCGCCCAGAGCACCAG TACCCTGTGTATGTGCCATACTCCAGCGCCCAGAGCACCAG < 41bp 1 0.78658282441022 1 0.960173547267914 experiment 0.42683435117956 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control TAB1 ENSG00000100324 CDS Human protein_coding chr22:39824063 chr22:39824053 nonsynonymous SNV 0.927 4 11 hm5C_associated_SNPs_42363 0 0 1 0 1 TAB1 chr22:39824026 3'AG 39824026 Downstream 28bp
chr20 30898919 30898919 1 + G T UCEC 30898904 + 30898884 30898924 41 TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGAGAAA TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAATAGAAA < 41bp 1 0.461734291981991 1 0.350228071212769 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898904 chr20:30898919 stopgain 1.000 1 36 hm5C_associated_SNPs_42364 0 0 0 0 3 KIF3B chr20:30898832 3'AG 30898832 Downstream 88bp
chr20 30898919 30898919 1 + G T UCEC 30898904 + 30898884 30898924 41 TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGAGAAA TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAATAGAAA < 41bp 1 0.461734291981991 1 0.350228071212769 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898904 chr20:30898919 stopgain 1.000 1 36 hm5C_associated_SNPs_42364 0 0 0 0 3 KIF3B chr20:30898890 3'AG 30898890 Downstream 30bp
chr20 30898919 30898919 1 + G T UCEC 30898904 + 30898884 30898924 41 TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGAGAAA TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAATAGAAA < 41bp 1 0.461734291981991 1 0.350228071212769 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898904 chr20:30898919 stopgain 1.000 1 36 hm5C_associated_SNPs_42364 0 0 0 0 3 KIF3B chr20:30898984 5'GT 30898984 Upstream 66bp
chr9 36162413 36162413 1 + C T UCEC 36162431 + 36162411 36162451 41 GGCGTCCGCAAGTGACGGGTCCTCCTTTGTGGTGGCCAGAT GGTGTCCGCAAGTGACGGGTCCTCCTTTGTGGTGGCCAGAT < 41bp 1 0.0864404802459557 1 0.0391649901866913 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GLIPR2 ENSG00000122694 CDS Human protein_coding chr9:36162431 chr9:36162413 nonsynonymous SNV 0.893 4 3 hm5C_associated_SNPs_42366 0 0 0 0 1 GLIPR2 chr9:36162359 3'AG 36162359 Downstream 55bp
chr16 70165259 70165259 1 + G A UCEC 70165261 + 70165241 70165281 41 GTTAGTATCCCGCTACATGCCTGCGAACACTTCTACCTCCT GTTAGTATCCCGCTACATACCTGCGAACACTTCTACCTCCT < 41bp 1 0.784557049086164 1 0.443821161985397 experiment 0.430885901827672 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70165261 chr16:70165259 nonsynonymous SNV 0.999 2 19 hm5C_associated_SNPs_42367 0 0 0 0 2 PDPR chr16:70165205 3'AG 70165205 Downstream 55bp
chr16 70165259 70165259 1 + G A UCEC 70165261 + 70165241 70165281 41 GTTAGTATCCCGCTACATGCCTGCGAACACTTCTACCTCCT GTTAGTATCCCGCTACATACCTGCGAACACTTCTACCTCCT < 41bp 1 0.784557049086164 1 0.443821161985397 experiment 0.430885901827672 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70165261 chr16:70165259 nonsynonymous SNV 0.999 2 19 hm5C_associated_SNPs_42367 0 0 0 0 2 PDPR chr16:70165322 5'GT 70165322 Upstream 64bp
chr17 7401148 7401148 1 + C T UCEC 7401133 + 7401113 7401153 41 GACCAGGTTGGCGTGCCCCGCTCCATTGCTGCCAACATGAC GACCAGGTTGGCGTGCCCCGCTCCATTGCTGCCAATATGAC < 41bp 1 0.669275777652009 1 0.923181116580963 experiment 0.661448444695981 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR2A ENSG00000181222 CDS Human protein_coding chr17:7401133 chr17:7401148 synonymous SNV . 0 36 hm5C_associated_SNPs_42369 0 0 1 0 1 POLR2A chr17:7401189 5'GT 7401189 Upstream 42bp
chr7 157041145 157041145 1 + C T UCEC 157041160 + 157041140 157041180 41 GTGGACATTCACCACCTCGCCTCCCTAGACCCTGAGGTGTA GTGGATATTCACCACCTCGCCTCCCTAGACCCTGAGGTGTA < 41bp 1 0.36029357119837 1 0.519984483718872 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE3C ENSG00000009335 CDS Human protein_coding chr7:157041160 chr7:157041145 synonymous SNV . 0 6 hm5C_associated_SNPs_42370 0 0 1 0 1 UBE3C chr7:157041062 3'AG 157041062 Downstream 84bp
chr4 26622294 26622294 1 + A G UCEC 26622308 + 26622288 26622328 41 TGGTATACATGAGGAAAGCACAGGTTGGCTATTGTTCAATT TGGTATGCATGAGGAAAGCACAGGTTGGCTATTGTTCAATT < 41bp 1 0.457727634309379 1 0.282842457294464 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D19 ENSG00000109680 CDS Human protein_coding chr4:26622308 chr4:26622294 nonsynonymous SNV 0.999 4 7 hm5C_associated_SNPs_42371 0 0 1 0 2 TBC1D19 chr4:26622235 3'AG 26622235 Downstream 60bp
chr4 26622294 26622294 1 + A G UCEC 26622308 + 26622288 26622328 41 TGGTATACATGAGGAAAGCACAGGTTGGCTATTGTTCAATT TGGTATGCATGAGGAAAGCACAGGTTGGCTATTGTTCAATT < 41bp 1 0.457727634309379 1 0.282842457294464 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D19 ENSG00000109680 CDS Human protein_coding chr4:26622308 chr4:26622294 nonsynonymous SNV 0.999 4 7 hm5C_associated_SNPs_42371 0 0 1 0 2 TBC1D19 chr4:26622310 5'GT 26622310 Upstream 17bp
chr12 95868070 95868070 1 + A G UCEC 95868059 + 95868039 95868079 41 CTCTACGGCTGAGGAAGCAGCCAAGAAAAAAAGACGAAAGA CTCTACGGCTGAGGAAGCAGCCAAGAAAAAAGGACGAAAGA < 41bp 1 0.337174305225717 1 0.424514412879944 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95868059 chr12:95868070 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_42372 0 0 1 0 1 METAP2 chr12:95868106 5'GT 95868106 Upstream 37bp
chr19 58904831 58904831 1 + T C UCEC 58904832 + 58904812 58904852 41 ACGACAGGCTGTGGATGTGTCCCCCCTGCGCCGTGTGAACC ACGACAGGCTGTGGATGTGCCCCCCCTGCGCCGTGTGAACC < 41bp 1 0.229397221088465 1 0.039327472448349 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904832 chr19:58904831 nonsynonymous SNV 0.980 4 20 hm5C_associated_SNPs_42373 0 0 1 0 1 RPS5 chr19:58904854 5'GT 58904854 Upstream 24bp
chr19 58904831 58904831 1 + T C UCEC 58904833 + 58904813 58904853 41 CGACAGGCTGTGGATGTGTCCCCCCTGCGCCGTGTGAACCA CGACAGGCTGTGGATGTGCCCCCCCTGCGCCGTGTGAACCA < 41bp 1 0.402124554561466 1 0.127671182155609 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904833 chr19:58904831 nonsynonymous SNV 0.980 4 19 hm5C_associated_SNPs_42374 0 0 1 0 1 RPS5 chr19:58904854 5'GT 58904854 Upstream 24bp
chr19 58904831 58904831 1 + T C UCEC 58904834 + 58904814 58904854 41 GACAGGCTGTGGATGTGTCCCCCCTGCGCCGTGTGAACCAG GACAGGCTGTGGATGTGCCCCCCCTGCGCCGTGTGAACCAG < 41bp 1 0.394610867394323 1 0.183890104293823 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904834 chr19:58904831 nonsynonymous SNV 0.980 4 18 hm5C_associated_SNPs_42375 0 0 1 0 1 RPS5 chr19:58904854 5'GT 58904854 Upstream 24bp
chr19 58904831 58904831 1 + T C UCEC 58904840 + 58904820 58904860 41 CTGTGGATGTGTCCCCCCTGCGCCGTGTGAACCAGGTGAGC CTGTGGATGTGCCCCCCCTGCGCCGTGTGAACCAGGTGAGC < 41bp 1 0.769327257933656 1 0.42689460515976 experiment 0.461345484132687 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904840 chr19:58904831 nonsynonymous SNV 0.980 4 12 hm5C_associated_SNPs_42376 0 0 1 0 1 RPS5 chr19:58904854 5'GT 58904854 Upstream 24bp
chr19 58904831 58904831 1 + T C UCEC 58904843 + 58904823 58904863 41 TGGATGTGTCCCCCCTGCGCCGTGTGAACCAGGTGAGCCTG TGGATGTGCCCCCCCTGCGCCGTGTGAACCAGGTGAGCCTG < 41bp 1 0.519373531902105 1 0.0957700312137604 experiment 0.96125293619579 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904843 chr19:58904831 nonsynonymous SNV 0.980 4 9 hm5C_associated_SNPs_42377 0 0 1 0 1 RPS5 chr19:58904854 5'GT 58904854 Upstream 24bp
chr14 24784940 24784940 1 + C T UCEC 24784923 + 24784903 24784943 41 TTCATCTCTCTGCTGGCTATCATCCTGCTGTCAGTGGCGCT TTCATCTCTCTGCTGGCTATCATCCTGCTGTCAGTGGTGCT < 41bp 1 0.0997423541695306 1 0.691152334213257 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LTB4R ENSG00000213903 CDS Human protein_coding chr14:24784923 chr14:24784940 nonsynonymous SNV 0.980 1 38 hm5C_associated_SNPs_42378 0 0 1 0 1 LTB4R chr14:24784843 3'AG 24784843 Downstream 98bp
chr11 9530362 9530362 1 + G T UCEC 9530377 + 9530357 9530397 41 GAGGAGGAGCAGGAAGCCTTCTTTGAGCCGCCCCCAGGTGA GAGGATGAGCAGGAAGCCTTCTTTGAGCCGCCCCCAGGTGA < 41bp 1 0.397565722660471 1 0.0878462791442871 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9530377 chr11:9530362 nonsynonymous SNV 0.990 3 6 hm5C_associated_SNPs_42379 0 0 0 0 1 ZNF143 chr11:9530393 5'GT 9530393 Upstream 32bp
chr17 80426686 80426686 1 + C A UCEC 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGTGCTGGTAGTGTCTGTGTGTCATCAATCTTTGC < 41bp 1 0.523163815354948 1 0.365755677223206 experiment 0.953672369290104 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426686 nonsynonymous SNV 0.997 4 30 hm5C_associated_SNPs_42380 0 0 1 2 2 NARF chr17:80426640 3'AG 80426640 Downstream 47bp
chr17 80426686 80426686 1 + C A UCEC 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGTGCTGGTAGTGTCTGTGTGTCATCAATCTTTGC < 41bp 1 0.523163815354948 1 0.365755677223206 experiment 0.953672369290104 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426686 nonsynonymous SNV 0.997 4 30 hm5C_associated_SNPs_42380 0 0 1 2 2 NARF chr17:80426772 5'GT 80426772 Upstream 87bp
chr16 14970244 14970244 1 + C T UCEC 14970225 + 14970205 14970245 41 TCCCCTCTTAGAAAGCTGCCCAGGGAAGCTGATCGAGATCC TCCCCTCTTAGAAAGCTGCCCAGGGAAGCTGATCGAGATTC < 41bp 1 0.633486977869217 1 0.692391395568848 experiment 0.733026044261567 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14970225 chr16:14970244 synonymous SNV . 0 40 hm5C_associated_SNPs_42381 0 0 1 0 1 NOMO1 chr16:14970216 3'AG 14970216 Downstream 29bp
chr5 7885823 7885823 1 + T C UCEC 7885818 + 7885798 7885838 41 TTTGGCTCTTCTCTAGAATACAGACTTTTCCTATCAGCCTG TTTGGCTCTTCTCTAGAATACAGACCTTTCCTATCAGCCTG < 41bp 1 0.323511221091989 1 0.363283932209015 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885818 chr5:7885823 nonsynonymous SNV 0.959 0 26 hm5C_associated_SNPs_42382 0 0 1 3 1 MTRR chr5:7885814 3'AG 7885814 Downstream 10bp
chr5 7885823 7885823 1 + T C UCEC 7885822 + 7885802 7885842 41 GCTCTTCTCTAGAATACAGACTTTTCCTATCAGCCTGGAGA GCTCTTCTCTAGAATACAGACCTTTCCTATCAGCCTGGAGA < 41bp 1 0.0161034813128289 1 0.0157137215137482 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885822 chr5:7885823 nonsynonymous SNV 0.959 0 22 hm5C_associated_SNPs_42383 0 0 1 3 1 MTRR chr5:7885814 3'AG 7885814 Downstream 10bp
chr5 7885823 7885823 1 + T C UCEC 7885828 + 7885808 7885848 41 CTCTAGAATACAGACTTTTCCTATCAGCCTGGAGATGCCTT CTCTAGAATACAGACCTTTCCTATCAGCCTGGAGATGCCTT < 41bp 1 0.108631622202054 1 0.0849094390869141 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885828 chr5:7885823 nonsynonymous SNV 0.959 0 16 hm5C_associated_SNPs_42384 0 0 1 3 1 MTRR chr5:7885814 3'AG 7885814 Downstream 10bp
chr5 7885823 7885823 1 + T C UCEC 7885832 + 7885812 7885852 41 AGAATACAGACTTTTCCTATCAGCCTGGAGATGCCTTCAGC AGAATACAGACCTTTCCTATCAGCCTGGAGATGCCTTCAGC < 41bp 1 0.472273744423838 1 0.260106205940247 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885832 chr5:7885823 nonsynonymous SNV 0.959 0 12 hm5C_associated_SNPs_42385 0 0 1 3 1 MTRR chr5:7885814 3'AG 7885814 Downstream 10bp
chr5 7885823 7885823 1 + T C UCEC 7885835 + 7885815 7885855 41 ATACAGACTTTTCCTATCAGCCTGGAGATGCCTTCAGCGTG ATACAGACCTTTCCTATCAGCCTGGAGATGCCTTCAGCGTG < 41bp 1 0.239218974978599 1 0.093623161315918 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885835 chr5:7885823 nonsynonymous SNV 0.959 0 9 hm5C_associated_SNPs_42386 0 0 1 3 1 MTRR chr5:7885814 3'AG 7885814 Downstream 10bp
chr12 121858125 121858125 1 + C T UCEC 121858127 + 121858107 121858147 41 TGATGATGAAGAAGAAAACGCAGAGGATCGGGTGAGGCCAC TGATGATGAAGAAGAAAATGCAGAGGATCGGGTGAGGCCAC < 41bp 1 0.759403019352118 1 0.824870407581329 experiment 0.481193961295764 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNF34 ENSG00000170633 CDS Human protein_coding chr12:121858127 chr12:121858125 synonymous SNV . 0 19 hm5C_associated_SNPs_42388 0 0 1 0 2 RNF34 chr12:121858045 3'AG 121858045 Downstream 81bp
chr12 121858125 121858125 1 + C T UCEC 121858127 + 121858107 121858147 41 TGATGATGAAGAAGAAAACGCAGAGGATCGGGTGAGGCCAC TGATGATGAAGAAGAAAATGCAGAGGATCGGGTGAGGCCAC < 41bp 1 0.759403019352118 1 0.824870407581329 experiment 0.481193961295764 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNF34 ENSG00000170633 CDS Human protein_coding chr12:121858127 chr12:121858125 synonymous SNV . 0 19 hm5C_associated_SNPs_42388 0 0 1 0 2 RNF34 chr12:121858137 5'GT 121858137 Upstream 13bp
chr1 114440553 114440553 1 - G A UCEC 114440557 - 114440537 114440577 41 CCTGTATTGTAGTGGTGGTGCAGACTTTCCGAGACCTGGTT CCTGTATTGTAGTGGTGGTGCAGATTTTCCGAGACCTGGTT < 41bp 1 0.515136287418869 1 0.282276034355164 experiment 0.969727425162263 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4B1 ENSG00000134262 CDS Human protein_coding chr1:114440557 chr1:114440553 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_42389 0 0 0 0 2 AP4B1 chr1:114440462 5'GT 114440462 Upstream 92bp
chr1 114440553 114440553 1 - G A UCEC 114440557 - 114440537 114440577 41 CCTGTATTGTAGTGGTGGTGCAGACTTTCCGAGACCTGGTT CCTGTATTGTAGTGGTGGTGCAGATTTTCCGAGACCTGGTT < 41bp 1 0.515136287418869 1 0.282276034355164 experiment 0.969727425162263 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4B1 ENSG00000134262 CDS Human protein_coding chr1:114440557 chr1:114440553 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_42389 0 0 0 0 2 AP4B1 chr1:114440565 3'AG 114440565 Downstream 13bp
chr22 35783087 35783087 1 + G A UCEC 35783079 + 35783059 35783099 41 ACCAAGTTCAAGCAGCTCTACCGCTCCCGCATGAACTCCCT ACCAAGTTCAAGCAGCTCTACCGCTCCCACATGAACTCCCT < 41bp 1 0.158597315069459 1 0.119621396064758 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35783079 chr22:35783087 nonsynonymous SNV 0.999 4 29 hm5C_associated_SNPs_42390 0 0 1 0 1 HMOX1 chr22:35783169 5'GT 35783169 Upstream 83bp
chr11 110333081 110333081 1 + A G UCEC 110333093 + 110333073 110333113 41 TACAGATCACGGTTGGGCTGCCAAATCTGTTTGACAAAATC TACAGATCGCGGTTGGGCTGCCAAATCTGTTTGACAAAATC < 41bp 1 0.237209209517454 1 0.258347004652023 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FDX1 ENSG00000137714 CDS Human protein_coding chr11:110333093 chr11:110333081 synonymous SNV . 0 9 hm5C_associated_SNPs_42393 0 0 1 0 1 FDX1 chr11:110333078 3'AG 110333078 Downstream 4bp
chr11 110333081 110333081 1 + A G UCEC 110333094 + 110333074 110333114 41 ACAGATCACGGTTGGGCTGCCAAATCTGTTTGACAAAATCT ACAGATCGCGGTTGGGCTGCCAAATCTGTTTGACAAAATCT < 41bp 1 0.241756529597667 1 0.595916926860809 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FDX1 ENSG00000137714 CDS Human protein_coding chr11:110333094 chr11:110333081 synonymous SNV . 0 8 hm5C_associated_SNPs_42394 0 0 1 0 1 FDX1 chr11:110333078 3'AG 110333078 Downstream 4bp
chr7 99751574 99751574 1 + C T UCEC 99751560 + 99751540 99751580 41 TTTGTGGTGAAGAGGCAGAACCGAGGTCGGGAGCCCATTGA TTTGTGGTGAAGAGGCAGAACCGAGGTCGGGAGCTCATTGA < 41bp 1 0.689348408849697 1 0.326058685779572 experiment 0.621303182300607 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMTOR4 ENSG00000188186 CDS Human protein_coding chr7:99751560 chr7:99751574 nonsynonymous SNV 0.993 4 35 hm5C_associated_SNPs_42395 0 0 1 0 1 LAMTOR4 chr7:99751490 3'AG 99751490 Downstream 85bp
chr3 183855520 183855520 1 + C T UCEC 183855522 + 183855502 183855542 41 GATGCCAAGGCTTTGGTGCGCTCTGACTTTCTTCTGGTGTA GATGCCAAGGCTTTGGTGTGCTCTGACTTTCTTCTGGTGTA < 41bp 1 0.411045236414716 1 0.117634236812592 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183855522 chr3:183855520 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_42397 0 0 1 0 1 EIF2B5 chr3:183855593 5'GT 183855593 Upstream 74bp
chr11 68363648 68363648 1 + C T UCEC 68363639 + 68363619 68363659 41 AAAGCAAGACTTGTTTGAACCCAGCAGTGCCAACACGGAGG AAAGCAAGACTTGTTTGAACCCAGCAGTGTCAACACGGAGG < 41bp 1 0.216282610614432 1 0.335182011127472 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68363639 chr11:68363648 nonsynonymous SNV 0.001 0 30 hm5C_associated_SNPs_42398 0 0 1 0 2 PPP6R3 chr11:68363565 3'AG 68363565 Downstream 84bp
chr11 68363648 68363648 1 + C T UCEC 68363639 + 68363619 68363659 41 AAAGCAAGACTTGTTTGAACCCAGCAGTGCCAACACGGAGG AAAGCAAGACTTGTTTGAACCCAGCAGTGTCAACACGGAGG < 41bp 1 0.216282610614432 1 0.335182011127472 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68363639 chr11:68363648 nonsynonymous SNV 0.001 0 30 hm5C_associated_SNPs_42398 0 0 1 0 2 PPP6R3 chr11:68363686 5'GT 68363686 Upstream 39bp
chr7 91714841 91714841 1 + G A UCEC 91714852 + 91714832 91714872 41 TGAAGGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATA TGAAGGCATACAGGTGCTTTCTCTCACTGAGTCTCCCTATA < 41bp 1 0.207229609773601 1 0.037899374961853 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714852 chr7:91714841 nonsynonymous SNV 0.997 1 10 hm5C_associated_SNPs_42399 0 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 33bp
chr7 91714841 91714841 1 + G A UCEC 91714856 + 91714836 91714876 41 GGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATAGTGA GGCATACAGGTGCTTTCTCTCACTGAGTCTCCCTATAGTGA < 41bp 1 0.378625265564608 1 0.119859784841537 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714856 chr7:91714841 nonsynonymous SNV 0.997 1 6 hm5C_associated_SNPs_42400 0 0 0 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 33bp
chr2 46607464 46607464 1 + C A UCEC 46607459 + 46607439 46607479 41 GCCCCATCTGCCCCGAGGAGCGGCTCTTGGCGGAGAACCCA GCCCCATCTGCCCCGAGGAGCGGCTATTGGCGGAGAACCCA < 41bp 1 0.461628502412598 1 0.469905465841293 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46607459 chr2:46607464 synonymous SNV . 0 26 hm5C_associated_SNPs_42401 0 0 1 0 1 EPAS1 chr2:46607366 3'AG 46607366 Downstream 99bp
chr9 36162451 36162451 1 + T C UCEC 36162431 + 36162411 36162451 41 GGCGTCCGCAAGTGACGGGTCCTCCTTTGTGGTGGCCAGAT GGCGTCCGCAAGTGACGGGTCCTCCTTTGTGGTGGCCAGAC < 41bp 1 0.0858085583193034 1 0.0478655695915222 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GLIPR2 ENSG00000122694 CDS Human protein_coding chr9:36162431 chr9:36162451 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_42404 0 0 0 1 1 GLIPR2 chr9:36162359 3'AG 36162359 Downstream 93bp
chr17 15929916 15929916 1 + C A UCEC 15929902 + 15929882 15929922 41 CTACCCTGGATGCACAGGGCCGCTTTGATGAGGCCTATATT CTACCCTGGATGCACAGGGCCGCTTTGATGAGGCATATATT < 41bp 1 0.138025550809593 1 0.0389781296253204 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15929902 chr17:15929916 synonymous SNV . 0 35 hm5C_associated_SNPs_42405 0 0 1 1 1 TTC19 chr17:15929854 3'AG 15929854 Downstream 63bp
chr7 135312777 135312777 1 + G A UCEC 135312770 + 135312750 135312790 41 TCATCCCTACCCCAGTGGATCGCTACCGCCAGATTCTCCTC TCATCCCTACCCCAGTGGATCGCTACCACCAGATTCTCCTC < 41bp 1 0.463508123704327 1 0.10894900560379 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135312770 chr7:135312777 nonsynonymous SNV 0.997 3 28 hm5C_associated_SNPs_42406 0 0 1 0 2 NUP205 chr7:135312721 3'AG 135312721 Downstream 57bp
chr7 135312777 135312777 1 + G A UCEC 135312770 + 135312750 135312790 41 TCATCCCTACCCCAGTGGATCGCTACCGCCAGATTCTCCTC TCATCCCTACCCCAGTGGATCGCTACCACCAGATTCTCCTC < 41bp 1 0.463508123704327 1 0.10894900560379 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135312770 chr7:135312777 nonsynonymous SNV 0.997 3 28 hm5C_associated_SNPs_42406 0 0 1 0 2 NUP205 chr7:135312859 5'GT 135312859 Upstream 83bp
chrX 107868971 107868971 1 + G A UCEC 107868973 + 107868953 107868993 41 GTCTCCCTGGACAGCCAGGTCTTATAGGACCTCCTGGACTT GTCTCCCTGGACAGCCAGATCTTATAGGACCTCCTGGACTT < 41bp 1 0.219673552936284 1 0.0411334633827209 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107868973 chrX:107868971 nonsynonymous SNV 0.990 2 19 hm5C_associated_SNPs_42407 0 0 0 0 2 COL4A5 chrX:107868935 3'AG 107868935 Downstream 37bp
chrX 107868971 107868971 1 + G A UCEC 107868973 + 107868953 107868993 41 GTCTCCCTGGACAGCCAGGTCTTATAGGACCTCCTGGACTT GTCTCCCTGGACAGCCAGATCTTATAGGACCTCCTGGACTT < 41bp 1 0.219673552936284 1 0.0411334633827209 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107868973 chrX:107868971 nonsynonymous SNV 0.990 2 19 hm5C_associated_SNPs_42407 0 0 0 0 2 COL4A5 chrX:107869024 5'GT 107869024 Upstream 54bp
chr22 41922351 41922351 1 + A G UCEC 41922331 + 41922311 41922351 41 TGGCTCAAGTTCCGTGGGCACTTGGATAACATCTCCAACAA TGGCTCAAGTTCCGTGGGCACTTGGATAACATCTCCAACAG < 41bp 1 0.564311413260971 1 0.302980244159698 experiment 0.871377173478059 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41922331 chr22:41922351 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_42408 0 0 1 0 1 ACO2 chr22:41922266 3'AG 41922266 Downstream 86bp
chr20 62904615 62904615 1 + G A UCEC 62904609 + 62904589 62904629 41 GCAGCCTCCAGGACTTGGCTCGCATCGCCATCCGGGGCACC GCAGCCTCCAGGACTTGGCTCGCATCACCATCCGGGGCACC < 41bp 1 0.369911401022184 1 0.0282723605632782 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCMTD2 ENSG00000203880 CDS Human protein_coding chr20:62904609 chr20:62904615 nonsynonymous SNV 0.981 1 27 hm5C_associated_SNPs_42410 0 0 1 0 1 PCMTD2 chr20:62904574 3'AG 62904574 Downstream 42bp
chr11 11971522 11971522 1 + G A UCEC 11971540 + 11971520 11971560 41 GAGCAATGTGGTTTAGAGCTCAGTATTGACAGGTAAAGTAA GAACAATGTGGTTTAGAGCTCAGTATTGACAGGTAAAGTAA < 41bp 1 0.475441347204716 1 0.293546557426453 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control USP47 ENSG00000170242 CDS Human protein_coding chr11:11971540 chr11:11971522 synonymous SNV . 0 3 hm5C_associated_SNPs_42411 0 0 0 0 2 USP47 chr11:11971436 3'AG 11971436 Downstream 87bp
chr11 11971522 11971522 1 + G A UCEC 11971540 + 11971520 11971560 41 GAGCAATGTGGTTTAGAGCTCAGTATTGACAGGTAAAGTAA GAACAATGTGGTTTAGAGCTCAGTATTGACAGGTAAAGTAA < 41bp 1 0.475441347204716 1 0.293546557426453 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control USP47 ENSG00000170242 CDS Human protein_coding chr11:11971540 chr11:11971522 synonymous SNV . 0 3 hm5C_associated_SNPs_42411 0 0 0 0 2 USP47 chr11:11971551 5'GT 11971551 Upstream 30bp
chr14 23070611 23070611 1 + C T UCEC 23070600 + 23070580 23070620 41 GCTGGCTGAGTAGCTGGCTGCCCACGTGGCGCCCCACTTCC GCTGGCTGAGTAGCTGGCTGCCCACGTGGCGTCCCACTTCC < 41bp 1 0.340799935055549 1 0.157898485660553 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23070600 chr14:23070611 synonymous SNV . 0 32 hm5C_associated_SNPs_42412 0 0 1 0 1 ABHD4 chr14:23070572 3'AG 23070572 Downstream 40bp
chr3 183369012 183369012 1 + C T UCEC 183369020 + 183369000 183369040 41 CATGAAGCAAGACGGTACCACATACTTGGGAATGAAATGAT CATGAAGCAAGATGGTACCACATACTTGGGAATGAAATGAT < 41bp 1 0.108383855628327 1 0.135109484195709 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLHL24 ENSG00000114796 CDS Human protein_coding chr3:183369020 chr3:183369012 nonsynonymous SNV 0.931 4 13 hm5C_associated_SNPs_42417 0 0 1 0 1 KLHL24 chr3:183369064 5'GT 183369064 Upstream 53bp
chr17 34147395 34147395 1 + C A UCEC 34147392 + 34147372 34147412 41 AGCAGAGCTCATATAGCCAGCAACCATATAATAACCAGGGA AGCAGAGCTCATATAGCCAGCAAACATATAATAACCAGGGA < 41bp 1 0.158250103607022 1 0.625971496105194 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF15 ENSG00000172660 CDS Human other chr17:34147392 chr17:34147395 nonsynonymous SNV 0.919 1 24 hm5C_associated_SNPs_42418 0 0 1 0 2 TAF15 chr17:34147336 3'AG 34147336 Downstream 60bp
chr17 34147395 34147395 1 + C A UCEC 34147392 + 34147372 34147412 41 AGCAGAGCTCATATAGCCAGCAACCATATAATAACCAGGGA AGCAGAGCTCATATAGCCAGCAAACATATAATAACCAGGGA < 41bp 1 0.158250103607022 1 0.625971496105194 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF15 ENSG00000172660 CDS Human other chr17:34147392 chr17:34147395 nonsynonymous SNV 0.919 1 24 hm5C_associated_SNPs_42418 0 0 1 0 2 TAF15 chr17:34147441 5'GT 34147441 Upstream 47bp
chr3 45559431 45559431 1 + G A UCEC 45559415 + 45559395 45559435 41 CTGATGCTCTCCCTGGGGTGCTGAGATGGCAACAACGACTG CTGATGCTCTCCCTGGGGTGCTGAGATGGCAACAACAACTG < 41bp 1 0.419679888542982 1 0.22841939330101 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LARS2 ENSG00000011376 CDS Human protein_coding chr3:45559415 chr3:45559431 nonsynonymous SNV 0.905 4 37 hm5C_associated_SNPs_42419 0 0 1 0 1 LARS2 chr3:45559395 3'AG 45559395 Downstream 37bp
chr11 71502826 71502826 1 + C G UCEC 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTGAAGTAT < 41bp 1 0.185646763089923 1 0.473752200603485 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502826 synonymous SNV . 0 35 hm5C_associated_SNPs_42420 0 0 0 0 3 FAM86C1 chr11:71502782 3'AG 71502782 Downstream 45bp
chr11 71502826 71502826 1 + C G UCEC 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTGAAGTAT < 41bp 1 0.185646763089923 1 0.473752200603485 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502826 synonymous SNV . 0 35 hm5C_associated_SNPs_42420 0 0 0 0 3 FAM86C1 chr11:71502785 3'AG 71502785 Downstream 42bp
chr11 71502826 71502826 1 + C G UCEC 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTGAAGTAT < 41bp 1 0.185646763089923 1 0.473752200603485 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502826 synonymous SNV . 0 35 hm5C_associated_SNPs_42420 0 0 0 0 3 FAM86C1 chr11:71502865 5'GT 71502865 Upstream 40bp
chr12 44166772 44166772 1 + G A UCEC 44166754 + 44166734 44166774 41 TTATGAATTGAAGAATGTCACAAATAACTTTGATGAACGAC TTATGAATTGAAGAATGTCACAAATAACTTTGATGAACAAC < 41bp 1 0.207581245579461 1 0.346153438091278 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IRAK4 ENSG00000198001 CDS Human protein_coding chr12:44166754 chr12:44166772 nonsynonymous SNV 0.802 1 39 hm5C_associated_SNPs_42421 0 0 1 0 1 IRAK4 chr12:44166715 3'AG 44166715 Downstream 58bp
chr7 130021554 130021554 1 + C A UCEC 130021536 + 130021516 130021556 41 GTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT GTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATATT < 41bp 1 0.11960982088981 1 0.074722945690155 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021536 chr7:130021554 synonymous SNV . 0 39 hm5C_associated_SNPs_42422 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 84bp
chr7 130021554 130021554 1 + C A UCEC 130021536 + 130021516 130021556 41 GTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT GTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATATT < 41bp 1 0.11960982088981 1 0.074722945690155 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021536 chr7:130021554 synonymous SNV . 0 39 hm5C_associated_SNPs_42422 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 19bp
chr7 130021554 130021554 1 + C A UCEC 130021539 + 130021519 130021559 41 CGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCT CGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATATTTCT < 41bp 1 0.343648955767232 1 0.323113977909088 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021539 chr7:130021554 synonymous SNV . 0 36 hm5C_associated_SNPs_42423 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 84bp
chr7 130021554 130021554 1 + C A UCEC 130021539 + 130021519 130021559 41 CGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCT CGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATATTTCT < 41bp 1 0.343648955767232 1 0.323113977909088 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021539 chr7:130021554 synonymous SNV . 0 36 hm5C_associated_SNPs_42423 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 19bp
chr7 130021554 130021554 1 + C A UCEC 130021540 + 130021520 130021560 41 GAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCTG GAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATATTTCTG < 41bp 1 0.667560865607966 1 0.832034647464752 experiment 0.664878268784068 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021540 chr7:130021554 synonymous SNV . 0 35 hm5C_associated_SNPs_42424 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 84bp
chr7 130021554 130021554 1 + C A UCEC 130021540 + 130021520 130021560 41 GAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCTG GAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATATTTCTG < 41bp 1 0.667560865607966 1 0.832034647464752 experiment 0.664878268784068 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021540 chr7:130021554 synonymous SNV . 0 35 hm5C_associated_SNPs_42424 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 19bp
chr7 130021554 130021554 1 + C A UCEC 130021544 + 130021524 130021564 41 GCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCTGGAGT GCCCTTCCCCAGCATCCAGGCGGTCAAGATATTTCTGGAGT < 41bp 1 0.207072117421654 1 0.504766166210175 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021544 chr7:130021554 synonymous SNV . 0 31 hm5C_associated_SNPs_42425 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 84bp
chr7 130021554 130021554 1 + C A UCEC 130021544 + 130021524 130021564 41 GCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCTGGAGT GCCCTTCCCCAGCATCCAGGCGGTCAAGATATTTCTGGAGT < 41bp 1 0.207072117421654 1 0.504766166210175 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021544 chr7:130021554 synonymous SNV . 0 31 hm5C_associated_SNPs_42425 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 19bp
chr7 130021554 130021554 1 + C A UCEC 130021565 + 130021545 130021585 41 GGTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGA GGTCAAGATATTTCTGGAGTCCCACGGCATCAGCTATGAGA < 41bp 1 0.157563569267106 1 0.0766908526420593 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021565 chr7:130021554 synonymous SNV . 0 10 hm5C_associated_SNPs_42426 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 84bp
chr7 130021554 130021554 1 + C A UCEC 130021565 + 130021545 130021585 41 GGTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGA GGTCAAGATATTTCTGGAGTCCCACGGCATCAGCTATGAGA < 41bp 1 0.157563569267106 1 0.0766908526420593 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021565 chr7:130021554 synonymous SNV . 0 10 hm5C_associated_SNPs_42426 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 19bp
chr7 130021554 130021554 1 + C A UCEC 130021566 + 130021546 130021586 41 GTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGAC GTCAAGATATTTCTGGAGTCCCACGGCATCAGCTATGAGAC < 41bp 1 0.355473788860229 1 0.467629015445709 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021566 chr7:130021554 synonymous SNV . 0 9 hm5C_associated_SNPs_42427 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 84bp
chr7 130021554 130021554 1 + C A UCEC 130021566 + 130021546 130021586 41 GTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGAC GTCAAGATATTTCTGGAGTCCCACGGCATCAGCTATGAGAC < 41bp 1 0.355473788860229 1 0.467629015445709 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021566 chr7:130021554 synonymous SNV . 0 9 hm5C_associated_SNPs_42427 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 19bp
chr7 130021554 130021554 1 + C A UCEC 130021567 + 130021547 130021587 41 TCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACC TCAAGATATTTCTGGAGTCCCACGGCATCAGCTATGAGACC < 41bp 1 0.747633582699678 1 0.449174612760544 experiment 0.504732834600644 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021567 chr7:130021554 synonymous SNV . 0 8 hm5C_associated_SNPs_42428 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 84bp
chr7 130021554 130021554 1 + C A UCEC 130021567 + 130021547 130021587 41 TCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACC TCAAGATATTTCTGGAGTCCCACGGCATCAGCTATGAGACC < 41bp 1 0.747633582699678 1 0.449174612760544 experiment 0.504732834600644 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021567 chr7:130021554 synonymous SNV . 0 8 hm5C_associated_SNPs_42428 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 19bp
chr7 130021554 130021554 1 + C A UCEC 130021569 + 130021549 130021589 41 AAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACCAT AAGATATTTCTGGAGTCCCACGGCATCAGCTATGAGACCAT < 41bp 1 0.75438677359162 1 0.779182910919189 experiment 0.491226452816761 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021569 chr7:130021554 synonymous SNV . 0 6 hm5C_associated_SNPs_42429 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 84bp
chr7 130021554 130021554 1 + C A UCEC 130021569 + 130021549 130021589 41 AAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACCAT AAGATATTTCTGGAGTCCCACGGCATCAGCTATGAGACCAT < 41bp 1 0.75438677359162 1 0.779182910919189 experiment 0.491226452816761 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021569 chr7:130021554 synonymous SNV . 0 6 hm5C_associated_SNPs_42429 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 19bp
chr7 130021554 130021554 1 + C A UCEC 130021572 + 130021552 130021592 41 ATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGAT ATATTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGAT < 41bp 1 0.348465220725259 1 0.534707427024841 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021572 chr7:130021554 synonymous SNV . 0 3 hm5C_associated_SNPs_42430 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 84bp
chr7 130021554 130021554 1 + C A UCEC 130021572 + 130021552 130021592 41 ATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGAT ATATTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGAT < 41bp 1 0.348465220725259 1 0.534707427024841 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021572 chr7:130021554 synonymous SNV . 0 3 hm5C_associated_SNPs_42430 0 0 0 0 2 CPA1 chr7:130021536 3'AG 130021536 Downstream 19bp
chr7 148963445 148963445 1 + A G UCEC 148963456 + 148963436 148963476 41 CAGACAAGCACACAGAGGACCAGAGTCCTTCGACACCCTTG CAGACAAGCGCACAGAGGACCAGAGTCCTTCGACACCCTTG < 41bp 1 0.4549142765361 1 0.50784569978714 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF783 ENSG00000204946 CDS Human protein_coding chr7:148963456 chr7:148963445 nonsynonymous SNV 0.019 1 10 hm5C_associated_SNPs_42432 0 0 1 0 1 ZNF783 chr7:148963426 3'AG 148963426 Downstream 20bp
chrX 205502 205502 1 + C T UCEC 205500 + 205480 205520 41 AACAAGGCCTTGCCCTGCATCACGCGCCCTGTCGTGCTGAA AACAAGGCCTTGCCCTGCATCATGCGCCCTGTCGTGCTGAA < 41bp 1 0.223397858486591 1 0.0702100992202759 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:205500 chrX:205502 nonsynonymous SNV 0.016 1 23 hm5C_associated_SNPs_42434 0 0 1 0 1 PLCXD1 chrX:205536 5'GT 205536 Upstream 35bp
chrX 41089039 41089039 1 + A C UCEC 41089020 + 41089000 41089040 41 CTTGCAAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAA CTTGCAAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAACA < 41bp 1 0.0911760261454575 1 0.167693436145782 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089020 chrX:41089039 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_42438 0 0 0 0 1 USP9X chrX:41089080 5'GT 41089080 Upstream 42bp
chrX 41089039 41089039 1 + A C UCEC 41089025 + 41089005 41089045 41 AAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAAAGCCA AAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAACAAGCCA < 41bp 1 0.254330399012864 1 0.758983731269836 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089025 chrX:41089039 nonsynonymous SNV 1.000 0 35 hm5C_associated_SNPs_42439 0 0 0 0 1 USP9X chrX:41089080 5'GT 41089080 Upstream 42bp
chrX 41089039 41089039 1 + A C UCEC 41089043 + 41089023 41089063 41 TCCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAG TCCAGAGGAGGTAAAACAAGCCACCAGTGTGCAGCAGATAG < 41bp 1 0.0480776534200439 1 0.232910364866257 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089043 chrX:41089039 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_42440 0 0 0 0 1 USP9X chrX:41089080 5'GT 41089080 Upstream 42bp
chrX 41089039 41089039 1 + A C UCEC 41089044 + 41089024 41089064 41 CCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAGA CCAGAGGAGGTAAAACAAGCCACCAGTGTGCAGCAGATAGA < 41bp 1 0.512484648758423 1 0.213855683803558 experiment 0.975030702483155 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089044 chrX:41089039 nonsynonymous SNV 1.000 0 16 hm5C_associated_SNPs_42441 0 0 0 0 1 USP9X chrX:41089080 5'GT 41089080 Upstream 42bp
chrX 41089039 41089039 1 + A C UCEC 41089046 + 41089026 41089066 41 AGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAGAAA AGAGGAGGTAAAACAAGCCACCAGTGTGCAGCAGATAGAAA < 41bp 1 0.0612811152166436 1 0.0694719851016998 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089046 chrX:41089039 nonsynonymous SNV 1.000 0 14 hm5C_associated_SNPs_42442 0 0 0 0 1 USP9X chrX:41089080 5'GT 41089080 Upstream 42bp
chrX 41089039 41089039 1 + A C UCEC 41089047 + 41089027 41089067 41 GAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAGAAAT GAGGAGGTAAAACAAGCCACCAGTGTGCAGCAGATAGAAAT < 41bp 1 0.122104190684046 1 0.101808041334152 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089047 chrX:41089039 nonsynonymous SNV 1.000 0 13 hm5C_associated_SNPs_42443 0 0 0 0 1 USP9X chrX:41089080 5'GT 41089080 Upstream 42bp
chr7 142460379 142460379 1 + C A UCEC 142460366 + 142460346 142460386 41 CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG CTCCTACCCTGGAAAGATTACCAGCAACATGTTATGTGTGG < 41bp 1 0.133612290718294 1 0.12400233745575 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460366 chr7:142460379 nonsynonymous SNV 0.036 1 34 hm5C_associated_SNPs_42445 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 98bp
chr7 142460379 142460379 1 + C A UCEC 142460366 + 142460346 142460386 41 CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG CTCCTACCCTGGAAAGATTACCAGCAACATGTTATGTGTGG < 41bp 1 0.133612290718294 1 0.12400233745575 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460366 chr7:142460379 nonsynonymous SNV 0.036 1 34 hm5C_associated_SNPs_42445 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 40bp
chr7 142460379 142460379 1 + C A UCEC 142460367 + 142460347 142460387 41 TCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG TCCTACCCTGGAAAGATTACCAGCAACATGTTATGTGTGGG < 41bp 1 0.630166612467884 1 0.743853449821472 experiment 0.739666775064231 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460367 chr7:142460379 nonsynonymous SNV 0.036 1 33 hm5C_associated_SNPs_42446 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 98bp
chr7 142460379 142460379 1 + C A UCEC 142460367 + 142460347 142460387 41 TCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG TCCTACCCTGGAAAGATTACCAGCAACATGTTATGTGTGGG < 41bp 1 0.630166612467884 1 0.743853449821472 experiment 0.739666775064231 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460367 chr7:142460379 nonsynonymous SNV 0.036 1 33 hm5C_associated_SNPs_42446 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 40bp
chr7 142460379 142460379 1 + C A UCEC 142460370 + 142460350 142460390 41 TACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT TACCCTGGAAAGATTACCAGCAACATGTTATGTGTGGGCTT < 41bp 1 0.455191643927404 1 0.730903029441833 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460370 chr7:142460379 nonsynonymous SNV 0.036 1 30 hm5C_associated_SNPs_42447 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 98bp
chr7 142460379 142460379 1 + C A UCEC 142460370 + 142460350 142460390 41 TACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT TACCCTGGAAAGATTACCAGCAACATGTTATGTGTGGGCTT < 41bp 1 0.455191643927404 1 0.730903029441833 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460370 chr7:142460379 nonsynonymous SNV 0.036 1 30 hm5C_associated_SNPs_42447 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 40bp
chr7 142460379 142460379 1 + C A UCEC 142460373 + 142460353 142460393 41 CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT CCTGGAAAGATTACCAGCAACATGTTATGTGTGGGCTTCCT < 41bp 1 0.257522192336766 1 0.177739411592484 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460373 chr7:142460379 nonsynonymous SNV 0.036 1 27 hm5C_associated_SNPs_42448 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 98bp
chr7 142460379 142460379 1 + C A UCEC 142460373 + 142460353 142460393 41 CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT CCTGGAAAGATTACCAGCAACATGTTATGTGTGGGCTTCCT < 41bp 1 0.257522192336766 1 0.177739411592484 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460373 chr7:142460379 nonsynonymous SNV 0.036 1 27 hm5C_associated_SNPs_42448 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 40bp
chr7 142460379 142460379 1 + C A UCEC 142460388 + 142460368 142460408 41 AGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA AGCAACATGTTATGTGTGGGCTTCCTTGAGGGAGGCAAGGA < 41bp 1 0.118327843857077 1 0.136021852493286 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460388 chr7:142460379 nonsynonymous SNV 0.036 1 12 hm5C_associated_SNPs_42449 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 98bp
chr7 142460379 142460379 1 + C A UCEC 142460388 + 142460368 142460408 41 AGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA AGCAACATGTTATGTGTGGGCTTCCTTGAGGGAGGCAAGGA < 41bp 1 0.118327843857077 1 0.136021852493286 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460388 chr7:142460379 nonsynonymous SNV 0.036 1 12 hm5C_associated_SNPs_42449 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 40bp
chr7 142460379 142460379 1 + C A UCEC 142460391 + 142460371 142460411 41 AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC AACATGTTATGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC < 41bp 1 0.0319926128558875 1 0.102369487285614 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460391 chr7:142460379 nonsynonymous SNV 0.036 1 9 hm5C_associated_SNPs_42450 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 98bp
chr7 142460379 142460379 1 + C A UCEC 142460391 + 142460371 142460411 41 AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC AACATGTTATGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC < 41bp 1 0.0319926128558875 1 0.102369487285614 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460391 chr7:142460379 nonsynonymous SNV 0.036 1 9 hm5C_associated_SNPs_42450 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 40bp
chr7 142460379 142460379 1 + C A UCEC 142460392 + 142460372 142460412 41 ACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA ACATGTTATGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA < 41bp 1 0.612057631783485 1 0.374273180961609 experiment 0.77588473643303 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460392 chr7:142460379 nonsynonymous SNV 0.036 1 8 hm5C_associated_SNPs_42451 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 98bp
chr7 142460379 142460379 1 + C A UCEC 142460392 + 142460372 142460412 41 ACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA ACATGTTATGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA < 41bp 1 0.612057631783485 1 0.374273180961609 experiment 0.77588473643303 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460392 chr7:142460379 nonsynonymous SNV 0.036 1 8 hm5C_associated_SNPs_42451 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 40bp
chr1 65871756 65871756 1 + G A UCEC 65871740 + 65871720 65871760 41 CCCCACTCCTCTCCCCAGAACCGACCCAACTACAACGTGAG CCCCACTCCTCTCCCCAGAACCGACCCAACTACAACATGAG < 41bp 1 0.0500008460179053 1 0.142443656921387 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65871740 chr1:65871756 nonsynonymous SNV 0.996 1 37 hm5C_associated_SNPs_42453 0 0 0 0 1 DNAJC6 chr1:65871816 5'GT 65871816 Upstream 61bp
chr16 31473251 31473251 1 + C A UCEC 31473271 + 31473251 31473291 41 CTTCAGTGCATGAAGACAGACAGCATCCAGAACCGAACGGC ATTCAGTGCATGAAGACAGACAGCATCCAGAACCGAACGGC < 41bp 1 0.693488378588585 1 0.582305431365967 experiment 0.613023242822829 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARMC5 ENSG00000140691 CDS Human protein_coding chr16:31473271 chr16:31473251 nonsynonymous SNV 0.999 2 1 hm5C_associated_SNPs_42454 0 0 1 0 2 ARMC5 chr16:31473243 3'AG 31473243 Downstream 9bp
chr16 31473251 31473251 1 + C A UCEC 31473271 + 31473251 31473291 41 CTTCAGTGCATGAAGACAGACAGCATCCAGAACCGAACGGC ATTCAGTGCATGAAGACAGACAGCATCCAGAACCGAACGGC < 41bp 1 0.693488378588585 1 0.582305431365967 experiment 0.613023242822829 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARMC5 ENSG00000140691 CDS Human protein_coding chr16:31473271 chr16:31473251 nonsynonymous SNV 0.999 2 1 hm5C_associated_SNPs_42454 0 0 1 0 2 ARMC5 chr16:31473350 5'GT 31473350 Upstream 100bp
chr2 160623840 160623840 1 + T G UCEC 160623826 + 160623806 160623846 41 GATTCCGAAGAAGACGGAGACCATAACAGGACATTTGATAT GATTCCGAAGAAGACGGAGACCATAACAGGACATGTGATAT < 41bp 1 0.260865721901588 1 0.12898525595665 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH7 ENSG00000136536 CDS Human protein_coding chr2:160623826 chr2:160623840 nonsynonymous SNV 0.998 3 35 hm5C_associated_SNPs_42455 0 0 1 0 1 MARCH7 chr2:160623795 3'AG 160623795 Downstream 46bp
chr8 37968308 37968308 1 + G A UCEC 37968305 + 37968285 37968325 41 GGCCAACCTGACATGGCAGTCCCGAACACAGGATGAACATC GGCCAACCTGACATGGCAGTCCCAAACACAGGATGAACATC < 41bp 1 0.371147430806923 1 0.351732909679413 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ASH2L ENSG00000129691 CDS Human protein_coding chr8:37968305 chr8:37968308 nonsynonymous SNV 0.992 2 24 hm5C_associated_SNPs_42456 0 0 1 0 2 ASH2L chr8:37968257 3'AG 37968257 Downstream 52bp
chr8 37968308 37968308 1 + G A UCEC 37968305 + 37968285 37968325 41 GGCCAACCTGACATGGCAGTCCCGAACACAGGATGAACATC GGCCAACCTGACATGGCAGTCCCAAACACAGGATGAACATC < 41bp 1 0.371147430806923 1 0.351732909679413 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ASH2L ENSG00000129691 CDS Human protein_coding chr8:37968305 chr8:37968308 nonsynonymous SNV 0.992 2 24 hm5C_associated_SNPs_42456 0 0 1 0 2 ASH2L chr8:37968351 5'GT 37968351 Upstream 44bp
chr11 101981863 101981863 1 + T G UCEC 101981844 + 101981824 101981864 41 AGACCGTGCCCATGAGGCTCCGGAAGCTGCCCGACTCCTTC AGACCGTGCCCATGAGGCTCCGGAAGCTGCCCGACTCCTGC < 41bp 1 0.787615871297223 1 0.589774072170258 experiment 0.424768257405554 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control YAP1 ENSG00000137693 CDS Human protein_coding chr11:101981844 chr11:101981863 nonsynonymous SNV 0.999 3 40 hm5C_associated_SNPs_42457 0 0 1 0 1 YAP1 chr11:101981900 5'GT 101981900 Upstream 38bp
chrX 48457786 48457786 1 + C T UCEC 48457772 + 48457752 48457792 41 TGATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTG TGATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTTGTTCTG < 41bp 1 0.318688365106252 1 0.0583165287971497 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457772 chrX:48457786 nonsynonymous SNV 0.996 3 35 hm5C_associated_SNPs_42458 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 65bp
chrX 48457786 48457786 1 + C T UCEC 48457773 + 48457753 48457793 41 GATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGT GATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTTGTTCTGT < 41bp 1 0.296777855377245 1 0.331882536411285 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457773 chrX:48457786 nonsynonymous SNV 0.996 3 34 hm5C_associated_SNPs_42459 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 65bp
chrX 48457786 48457786 1 + C T UCEC 48457774 + 48457754 48457794 41 ATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGTC ATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTTGTTCTGTC < 41bp 1 0.704204316134545 1 0.687524080276489 experiment 0.591591367730909 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457774 chrX:48457786 nonsynonymous SNV 0.996 3 33 hm5C_associated_SNPs_42460 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 65bp
chr2 54845327 54845327 1 + G A UCEC 54845324 + 54845304 54845344 41 GCCTCACTAAACTGTTGGACCCCGAAGGTAGGGACTCAAGG GCCTCACTAAACTGTTGGACCCCAAAGGTAGGGACTCAAGG < 41bp 1 0.132791179544548 1 0.115882217884064 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54845324 chr2:54845327 nonsynonymous SNV 0.903 4 24 hm5C_associated_SNPs_42461 0 0 1 0 1 SPTBN1 chr2:54845330 5'GT 54845330 Upstream 4bp
chr2 54845327 54845327 1 + G A UCEC 54845325 + 54845305 54845345 41 CCTCACTAAACTGTTGGACCCCGAAGGTAGGGACTCAAGGG CCTCACTAAACTGTTGGACCCCAAAGGTAGGGACTCAAGGG < 41bp 1 0.179695905511655 1 0.18105486035347 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54845325 chr2:54845327 nonsynonymous SNV 0.903 4 23 hm5C_associated_SNPs_42462 0 0 1 0 1 SPTBN1 chr2:54845330 5'GT 54845330 Upstream 4bp
chr2 54845327 54845327 1 + G A UCEC 54845326 + 54845306 54845346 41 CTCACTAAACTGTTGGACCCCGAAGGTAGGGACTCAAGGGA CTCACTAAACTGTTGGACCCCAAAGGTAGGGACTCAAGGGA < 41bp 1 0.282574499809941 1 0.481099307537079 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54845326 chr2:54845327 nonsynonymous SNV 0.903 4 22 hm5C_associated_SNPs_42463 0 0 1 0 1 SPTBN1 chr2:54845330 5'GT 54845330 Upstream 4bp
chr10 74994593 74994593 1 + G A UCEC 74994586 + 74994566 74994606 41 GATCTGCAGCCCAGTGGCACCCGACTCGCTCTCCTCTCCCT GATCTGCAGCCCAGTGGCACCCGACTCACTCTCCTCTCCCT < 41bp 1 0.25449830192016 1 0.258391857147217 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FAM149B1 ENSG00000138286 CDS Human protein_coding chr10:74994586 chr10:74994593 synonymous SNV . 0 28 hm5C_associated_SNPs_42464 0 0 0 0 1 FAM149B1 chr10:74994575 3'AG 74994575 Downstream 19bp
chr5 154251406 154251406 1 + A G UCEC 154251388 + 154251368 154251408 41 TCTGAACCTTTTCTTCCCATCCATTTATGATGTGAAATACC TCTGAACCTTTTCTTCCCATCCATTTATGATGTGAAATGCC < 41bp 1 0.0496736451996391 1 0.146324068307877 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT8 ENSG00000155508 CDS Human protein_coding chr5:154251388 chr5:154251406 nonsynonymous SNV 0.998 3 39 hm5C_associated_SNPs_42465 0 0 1 0 1 CNOT8 chr5:154251434 5'GT 154251434 Upstream 29bp
chr1 36354036 36354036 1 + G A UCEC 36354031 + 36354011 36354051 41 GCCTCTTTGTCTTGTAGCTGCGGGCGCTTACCTGCCCCCCC GCCTCTTTGTCTTGTAGCTGCGGGCACTTACCTGCCCCCCC < 41bp 1 0.656246277162497 1 0.892173528671265 experiment 0.687507445675006 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AGO1 ENSG00000092847 CDS Human protein_coding chr1:36354031 chr1:36354036 nonsynonymous SNV 0.995 0 26 hm5C_associated_SNPs_42468 0 0 1 0 1 AGO1 chr1:36354028 3'AG 36354028 Downstream 9bp
chr7 141255334 141255334 1 + C T UCEC 141255330 + 141255310 141255350 41 CTACAGCTGGGCTCTGCCTGCTGACCTGGGGAGGCCATTGG CTACAGCTGGGCTCTGCCTGCTGATCTGGGGAGGCCATTGG < 41bp 1 0.560998891790157 1 0.256607830524445 experiment 0.878002216419686 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGK ENSG00000006530 CDS Human protein_coding chr7:141255330 chr7:141255334 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_42470 0 0 1 0 2 AGK chr7:141255253 3'AG 141255253 Downstream 82bp
chr7 141255334 141255334 1 + C T UCEC 141255330 + 141255310 141255350 41 CTACAGCTGGGCTCTGCCTGCTGACCTGGGGAGGCCATTGG CTACAGCTGGGCTCTGCCTGCTGATCTGGGGAGGCCATTGG < 41bp 1 0.560998891790157 1 0.256607830524445 experiment 0.878002216419686 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGK ENSG00000006530 CDS Human protein_coding chr7:141255330 chr7:141255334 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_42470 0 0 1 0 2 AGK chr7:141255367 5'GT 141255367 Upstream 34bp
chr15 42111135 42111135 1 + A G UCEC 42111122 + 42111102 42111142 41 GGGCGGCAAGCAGCAAGGACCATCCTCTCCCCAAAGGGCTT GGGCGGCAAGCAGCAAGGACCATCCTCTCCCCAGAGGGCTT < 41bp 1 0.260614228574598 1 0.159453243017197 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42111122 chr15:42111135 synonymous SNV . 0 34 hm5C_associated_SNPs_42473 0 0 1 0 1 MAPKBP1 chr15:42111155 5'GT 42111155 Upstream 21bp
chr17 47004393 47004393 1 + G A UCEC 47004386 + 47004366 47004406 41 CCCTCTTGATGCGCCTGGGACTGATACGTCAGAAAGTGCTG CCCTCTTGATGCGCCTGGGACTGATACATCAGAAAGTGCTG < 41bp 1 0.254216762063744 1 0.0799285769462585 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE2Z ENSG00000159202 CDS Human protein_coding chr17:47004386 chr17:47004393 nonsynonymous SNV 0.995 1 28 hm5C_associated_SNPs_42477 0 0 1 0 1 UBE2Z chr17:47004326 3'AG 47004326 Downstream 68bp
chr2 28521313 28521313 1 + C T UCEC 28521298 + 28521278 28521318 41 TGGACAGCTTTACTCCCAGGCCCAAAAAAATTATCCGTACA TGGACAGCTTTACTCCCAGGCCCAAAAAAATTATCTGTACA < 41bp 1 0.18217685342567 1 0.146111130714417 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BABAM2 ENSG00000158019 CDS Human protein_coding chr2:28521298 chr2:28521313 nonsynonymous SNV 0.903 4 36 hm5C_associated_SNPs_42480 0 0 1 1 1 BABAM2 chr2:28521358 5'GT 28521358 Upstream 46bp
chr17 1637428 1637428 1 + C T UCEC 1637447 + 1637427 1637467 41 GCGTCTTCTTCGTGGGCCAGCTTGAGGCCCCGCAGCACGTG GTGTCTTCTTCGTGGGCCAGCTTGAGGCCCCGCAGCACGTG < 41bp 1 0.539670992498132 1 0.26719468832016 experiment 0.920658015003736 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1637447 chr17:1637428 synonymous SNV . 0 2 hm5C_associated_SNPs_42482 0 0 0 0 1 WDR81 chr17:1637510 5'GT 1637510 Upstream 83bp
chr4 123192856 123192856 1 + C A UCEC 123192859 + 123192839 123192879 41 AGGAATATTGGAAAAGTCTTCAGAAACATTTGGACCAGCAG AGGAATATTGGAAAAGTATTCAGAAACATTTGGACCAGCAG < 41bp 1 0.323264673484092 1 0.749978542327881 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123192859 chr4:123192856 nonsynonymous SNV 0.997 3 18 hm5C_associated_SNPs_42483 0 0 1 0 1 KIAA1109 chr4:123192879 5'GT 123192879 Upstream 24bp
chr7 150840476 150840476 1 + C A UCEC 150840477 + 150840457 150840497 41 AGTATGAACAGAAGCTCTTCCTGGCCCCACTGCCAAGCTCA AGTATGAACAGAAGCTCTTACTGGCCCCACTGCCAAGCTCA < 41bp 1 0.39056338823274 1 0.231147319078445 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150840477 chr7:150840476 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_42484 0 0 1 0 1 AGAP3 chr7:150840428 3'AG 150840428 Downstream 49bp
chr17 78087072 78087072 1 + T C UCEC 78087058 + 78087038 78087078 41 AGCGAGCCGGCCCAGCAGGCCATGAGGAAGGCCCTCACCCT AGCGAGCCGGCCCAGCAGGCCATGAGGAAGGCCCCCACCCT < 41bp 1 0.677554052807515 1 0.524318277835846 experiment 0.64489189438497 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78087058 chr17:78087072 nonsynonymous SNV 0.620 4 35 hm5C_associated_SNPs_42486 0 0 0 0 2 GAA chr17:78087017 3'AG 78087017 Downstream 56bp
chr17 78087072 78087072 1 + T C UCEC 78087058 + 78087038 78087078 41 AGCGAGCCGGCCCAGCAGGCCATGAGGAAGGCCCTCACCCT AGCGAGCCGGCCCAGCAGGCCATGAGGAAGGCCCCCACCCT < 41bp 1 0.677554052807515 1 0.524318277835846 experiment 0.64489189438497 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78087058 chr17:78087072 nonsynonymous SNV 0.620 4 35 hm5C_associated_SNPs_42486 0 0 0 0 2 GAA chr17:78087165 5'GT 78087165 Upstream 94bp
chr19 50385595 50385595 1 + G A UCEC 50385593 + 50385573 50385613 41 GCAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCGC GCAGCCACAGCCTGAGGGAGCCACCTCCGACCTTCCCCCGC < 41bp 1 0.194328529915407 1 0.140281856060028 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385593 chr19:50385595 nonsynonymous SNV 0.006 0 23 hm5C_associated_SNPs_42487 0 0 1 0 2 TBC1D17 chr19:50385499 3'AG 50385499 Downstream 97bp
chr19 50385595 50385595 1 + G A UCEC 50385593 + 50385573 50385613 41 GCAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCGC GCAGCCACAGCCTGAGGGAGCCACCTCCGACCTTCCCCCGC < 41bp 1 0.194328529915407 1 0.140281856060028 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385593 chr19:50385595 nonsynonymous SNV 0.006 0 23 hm5C_associated_SNPs_42487 0 0 1 0 2 TBC1D17 chr19:50385657 5'GT 50385657 Upstream 63bp
chr19 50385595 50385595 1 + G A UCEC 50385594 + 50385574 50385614 41 CAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCGCC CAGCCACAGCCTGAGGGAGCCACCTCCGACCTTCCCCCGCC < 41bp 1 0.474809161741029 1 0.239550113677979 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385594 chr19:50385595 nonsynonymous SNV 0.006 0 22 hm5C_associated_SNPs_42488 0 0 1 0 2 TBC1D17 chr19:50385499 3'AG 50385499 Downstream 97bp
chr19 50385595 50385595 1 + G A UCEC 50385594 + 50385574 50385614 41 CAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCGCC CAGCCACAGCCTGAGGGAGCCACCTCCGACCTTCCCCCGCC < 41bp 1 0.474809161741029 1 0.239550113677979 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385594 chr19:50385595 nonsynonymous SNV 0.006 0 22 hm5C_associated_SNPs_42488 0 0 1 0 2 TBC1D17 chr19:50385657 5'GT 50385657 Upstream 63bp
chr10 51581298 51581298 1 + G T UCEC 51581313 + 51581293 51581333 41 CTGAAGATTCAACTGTCCTGCTCTTTGAAGCTGACACAATT CTGAATATTCAACTGTCCTGCTCTTTGAAGCTGACACAATT < 41bp 1 0.157515808118018 1 0.0411920845508575 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCOA4 ENSG00000138293 CDS Human other chr10:51581313 chr10:51581298 nonsynonymous SNV . 0 6 hm5C_associated_SNPs_42489 0 0 1 0 2 NCOA4 chr10:51581270 3'AG 51581270 Downstream 29bp
chr10 51581298 51581298 1 + G T UCEC 51581313 + 51581293 51581333 41 CTGAAGATTCAACTGTCCTGCTCTTTGAAGCTGACACAATT CTGAATATTCAACTGTCCTGCTCTTTGAAGCTGACACAATT < 41bp 1 0.157515808118018 1 0.0411920845508575 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCOA4 ENSG00000138293 CDS Human other chr10:51581313 chr10:51581298 nonsynonymous SNV . 0 6 hm5C_associated_SNPs_42489 0 0 1 0 2 NCOA4 chr10:51581378 5'GT 51581378 Upstream 81bp
chr7 11076076 11076076 1 + G A UCEC 11076066 + 11076046 11076086 41 CAAGGATCAATGCCCGGCTTCAGCAGTATCGTGCCAAAGCA CAAGGATCAATGCCCGGCTTCAGCAGTATCATGCCAAAGCA < 41bp 1 0.743113559392933 1 0.210555195808411 experiment 0.513772881214134 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHF14 ENSG00000106443 CDS Human protein_coding chr7:11076066 chr7:11076076 nonsynonymous SNV 0.999 4 31 hm5C_associated_SNPs_42490 0 0 1 0 1 PHF14 chr7:11076045 3'AG 11076045 Downstream 32bp
chrX 107838772 107838772 1 + G A UCEC 107838784 + 107838764 107838804 41 CTGCATTGGAACTGGTATTTCAGGGCCTCCAGGTCAACCTG CTGCATTGAAACTGGTATTTCAGGGCCTCCAGGTCAACCTG < 41bp 1 0.78172691730853 1 0.716053485870361 experiment 0.436546165382939 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107838784 chrX:107838772 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_42491 0 0 1 0 2 COL4A5 chrX:107838739 3'AG 107838739 Downstream 34bp
chrX 107838772 107838772 1 + G A UCEC 107838784 + 107838764 107838804 41 CTGCATTGGAACTGGTATTTCAGGGCCTCCAGGTCAACCTG CTGCATTGAAACTGGTATTTCAGGGCCTCCAGGTCAACCTG < 41bp 1 0.78172691730853 1 0.716053485870361 experiment 0.436546165382939 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107838784 chrX:107838772 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_42491 0 0 1 0 2 COL4A5 chrX:107838831 5'GT 107838831 Upstream 60bp
chr10 103917297 103917297 1 + G T UCEC 103917292 + 103917272 103917312 41 ATGATGATGATGAGGAGGACCAAAAGAAACAGCCTGTCCAG ATGATGATGATGAGGAGGACCAAAATAAACAGCCTGTCCAG < 41bp 1 0.759958729697026 1 0.467622697353363 experiment 0.480082540605949 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103917292 chr10:103917297 nonsynonymous SNV 0.948 2 26 hm5C_associated_SNPs_42492 0 0 1 0 2 NOLC1 chr10:103917206 3'AG 103917206 Downstream 92bp
chr10 103917297 103917297 1 + G T UCEC 103917292 + 103917272 103917312 41 ATGATGATGATGAGGAGGACCAAAAGAAACAGCCTGTCCAG ATGATGATGATGAGGAGGACCAAAATAAACAGCCTGTCCAG < 41bp 1 0.759958729697026 1 0.467622697353363 experiment 0.480082540605949 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103917292 chr10:103917297 nonsynonymous SNV 0.948 2 26 hm5C_associated_SNPs_42492 0 0 1 0 2 NOLC1 chr10:103917312 5'GT 103917312 Upstream 16bp
chr7 150933632 150933632 1 + G A UCEC 150933614 + 150933594 150933634 41 AAGGTACCCTCATGTACCGGCTCCACAAACGCTTCAGCGCT AAGGTACCCTCATGTACCGGCTCCACAAACGCTTCAGCACT < 41bp 1 0.358352135923695 1 0.87986147403717 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150933614 chr7:150933632 nonsynonymous SNV 0.995 1 39 hm5C_associated_SNPs_42493 0 0 1 0 1 CHPF2 chr7:150933676 5'GT 150933676 Upstream 45bp
chr7 150933632 150933632 1 + G A UCEC 150933616 + 150933596 150933636 41 GGTACCCTCATGTACCGGCTCCACAAACGCTTCAGCGCTCT GGTACCCTCATGTACCGGCTCCACAAACGCTTCAGCACTCT < 41bp 1 0.235053465040721 1 0.103213548660278 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150933616 chr7:150933632 nonsynonymous SNV 0.995 1 37 hm5C_associated_SNPs_42494 0 0 1 0 1 CHPF2 chr7:150933676 5'GT 150933676 Upstream 45bp
chrX 149671734 149671734 1 + C T UCEC 149671740 + 149671720 149671760 41 GGGCAGCTGGGATCCGAAGGCCTGGAGGCAGGTGCCCGCTC GGGCAGCTGGGATCTGAAGGCCTGGAGGCAGGTGCCCGCTC < 41bp 1 0.489145356227635 1 0.747419655323029 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149671740 chrX:149671734 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_42501 0 0 0 0 1 MAMLD1 chrX:149671787 5'GT 149671787 Upstream 54bp
chrX 149671734 149671734 1 + C T UCEC 149671748 + 149671728 149671768 41 GGGATCCGAAGGCCTGGAGGCAGGTGCCCGCTCCACTACTG GGGATCTGAAGGCCTGGAGGCAGGTGCCCGCTCCACTACTG < 41bp 1 0.694708763802954 1 0.806815624237061 experiment 0.610582472394092 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149671748 chrX:149671734 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_42502 0 0 0 0 1 MAMLD1 chrX:149671787 5'GT 149671787 Upstream 54bp
chr17 27074254 27074254 1 + A G UCEC 27074259 + 27074239 27074279 41 TCTTCAAGTGCCCTGAGGACCAGCTTCCTCTGGACTATGCC TCTTCAAGTGCCCTGGGGACCAGCTTCCTCTGGACTATGCC < 41bp 1 0.431313943885087 1 0.336327075958252 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TRAF4 ENSG00000076604 CDS Human protein_coding chr17:27074259 chr17:27074254 stoploss 1.000 3 16 hm5C_associated_SNPs_42503 0 0 1 0 2 TRAF4 chr17:27074231 3'AG 27074231 Downstream 24bp
chr17 27074254 27074254 1 + A G UCEC 27074259 + 27074239 27074279 41 TCTTCAAGTGCCCTGAGGACCAGCTTCCTCTGGACTATGCC TCTTCAAGTGCCCTGGGGACCAGCTTCCTCTGGACTATGCC < 41bp 1 0.431313943885087 1 0.336327075958252 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TRAF4 ENSG00000076604 CDS Human protein_coding chr17:27074259 chr17:27074254 stoploss 1.000 3 16 hm5C_associated_SNPs_42503 0 0 1 0 2 TRAF4 chr17:27074282 5'GT 27074282 Upstream 29bp
chr17 74944110 74944110 1 + G A UCEC 74944107 + 74944087 74944127 41 GCACCGACACCTGCCTGGACCACGGGCTAATCTGTGAGCCC GCACCGACACCTGCCTGGACCACAGGCTAATCTGTGAGCCC < 41bp 1 0.526252878024742 1 0.344940423965454 experiment 0.947494243950515 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MGAT5B ENSG00000167889 CDS Human protein_coding chr17:74944107 chr17:74944110 nonsynonymous SNV 0.432 4 24 hm5C_associated_SNPs_42504 0 0 1 0 1 MGAT5B chr17:74944168 5'GT 74944168 Upstream 59bp
chr6 36884236 36884236 1 + C G UCEC 36884229 + 36884209 36884249 41 ATACTTCTACAGGAGGAGACCTCTGAACAGATCACAAATGT ATACTTCTACAGGAGGAGACCTCTGAAGAGATCACAAATGT < 41bp 1 0.202705391519141 1 0.321150064468384 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C6orf89 ENSG00000198663 CDS Human protein_coding chr6:36884229 chr6:36884236 nonsynonymous SNV 0.995 4 28 hm5C_associated_SNPs_42505 0 0 0 0 1 C6orf89 chr6:36884221 3'AG 36884221 Downstream 16bp
chr5 21491512 21491512 1 + C T UCEC 21491518 + 21491498 21491538 41 TCAGAAAACAAAGTCGTGGACAACCAGGCTGGGACCCAGGG TCAGAAAACAAAGTTGTGGACAACCAGGCTGGGACCCAGGG < 41bp 1 0.135963793496021 1 0.090019553899765 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21491518 chr5:21491512 . . 0 15 hm5C_associated_SNPs_42506 0 0 1 0 1 GUSBP1 chr5:21491430 3'AG 21491430 Downstream 83bp
chr6 33243789 33243789 1 + C T UCEC 33243772 + 33243752 33243792 41 TGATCACCATTATGCAGAATCCACGCCAGTACAAGATCCCA TGATCACCATTATGCAGAATCCACGCCAGTACAAGATTCCA < 41bp 1 0.207448088727419 1 0.0644068121910095 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243772 chr6:33243789 synonymous SNV . 0 38 hm5C_associated_SNPs_42508 0 0 1 0 2 RPS18 chr6:33243742 3'AG 33243742 Downstream 48bp
chr6 33243789 33243789 1 + C T UCEC 33243772 + 33243752 33243792 41 TGATCACCATTATGCAGAATCCACGCCAGTACAAGATCCCA TGATCACCATTATGCAGAATCCACGCCAGTACAAGATTCCA < 41bp 1 0.207448088727419 1 0.0644068121910095 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243772 chr6:33243789 synonymous SNV . 0 38 hm5C_associated_SNPs_42508 0 0 1 0 2 RPS18 chr6:33243843 5'GT 33243843 Upstream 55bp
chrX 129159318 129159318 1 + G T UCEC 129159311 + 129159291 129159331 41 AAATATCAGACTGGGGAGTACCTGACAGAGCAAGAAGACGA AAATATCAGACTGGGGAGTACCTGACATAGCAAGAAGACGA < 41bp 1 0.117680311488331 1 0.16925585269928 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129159311 chrX:129159318 stopgain 0.774 0 28 hm5C_associated_SNPs_42509 0 0 1 0 1 BCORL1 chrX:129159354 5'GT 129159354 Upstream 37bp
chr9 37486787 37486787 1 + G T UCEC 37486792 + 37486772 37486812 41 CCAACCCCAGGAAGAGGAATCAACGGATCCTGGTAAGTGAA CCAACCCCAGGAAGATGAATCAACGGATCCTGGTAAGTGAA < 41bp 1 0.545315632293601 1 0.538872957229614 experiment 0.909368735412798 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1E ENSG00000137054 CDS Human protein_coding chr9:37486792 chr9:37486787 nonsynonymous SNV 0.994 3 16 hm5C_associated_SNPs_42510 0 0 1 0 2 POLR1E chr9:37486700 3'AG 37486700 Downstream 88bp
chr9 37486787 37486787 1 + G T UCEC 37486792 + 37486772 37486812 41 CCAACCCCAGGAAGAGGAATCAACGGATCCTGGTAAGTGAA CCAACCCCAGGAAGATGAATCAACGGATCCTGGTAAGTGAA < 41bp 1 0.545315632293601 1 0.538872957229614 experiment 0.909368735412798 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1E ENSG00000137054 CDS Human protein_coding chr9:37486792 chr9:37486787 nonsynonymous SNV 0.994 3 16 hm5C_associated_SNPs_42510 0 0 1 0 2 POLR1E chr9:37486803 5'GT 37486803 Upstream 17bp
chr19 16212139 16212139 1 + G A UCEC 16212142 + 16212122 16212162 41 TGGATCAGACACTAAACGAACTTAACTGTATATAAGCAAAA TGGATCAGACACTAAACAAACTTAACTGTATATAAGCAAAA < 41bp 1 0.224135140409069 1 0.0836977064609528 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPM4 ENSG00000167460 CDS Human protein_coding chr19:16212142 chr19:16212139 nonsynonymous SNV 0.957 2 18 hm5C_associated_SNPs_42511 0 0 0 0 1 TPM4 chr19:16212074 3'AG 16212074 Downstream 66bp
chr9 131011004 131011004 1 + A G UCEC 131010994 + 131010974 131011014 41 TCAACAAGACCGTGAGGGACCTCATGCCCAAGACCATCATG TCAACAAGACCGTGAGGGACCTCATGCCCAGGACCATCATG < 41bp 1 0.36047383435455 1 0.0553626120090485 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM1 ENSG00000106976 CDS Human protein_coding chr9:131010994 chr9:131011004 nonsynonymous SNV 0.997 4 31 hm5C_associated_SNPs_42512 0 0 1 2 1 DNM1 chr9:131011032 5'GT 131011032 Upstream 29bp
chr9 18504876 18504876 1 + C T UCEC 18504862 + 18504842 18504882 41 CGCTCCGAGGAGGACCGGGACGGCCTATGGGATGCCTGGGG CGCTCCGAGGAGGACCGGGACGGCCTATGGGATGTCTGGGG < 41bp 1 0.324897081831322 1 0.41802591085434 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18504862 chr9:18504876 nonsynonymous SNV 0.998 2 35 hm5C_associated_SNPs_42514 0 0 0 0 1 ADAMTSL1 chr9:18504954 5'GT 18504954 Upstream 79bp
chrX 48457290 48457290 1 + G A UCEC 48457272 + 48457252 48457292 41 CCAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTG CCAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGTGCTCATG < 41bp 1 0.633453426121606 1 0.850570797920227 experiment 0.733093147756789 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457272 chrX:48457290 nonsynonymous SNV 0.998 4 39 hm5C_associated_SNPs_42515 0 0 1 0 1 WDR13 chrX:48457345 5'GT 48457345 Upstream 56bp
chrX 48457290 48457290 1 + G A UCEC 48457273 + 48457253 48457293 41 CAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTGC CAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGTGCTCATGC < 41bp 1 0.63402328580179 1 0.640731513500214 experiment 0.73195342839642 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457273 chrX:48457290 nonsynonymous SNV 0.998 4 38 hm5C_associated_SNPs_42516 0 0 1 0 1 WDR13 chrX:48457345 5'GT 48457345 Upstream 56bp
chr11 33358655 33358655 1 + G A UCEC 33358660 + 33358640 33358680 41 CTCAAGGTTTGCCAGGAGAACAGTTGTTAAATGTGGGTACT CTCAAGGTTTGCCAGAAGAACAGTTGTTAAATGTGGGTACT < 41bp 1 0.199076537553222 1 0.115263879299164 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HIPK3 ENSG00000110422 CDS Human protein_coding chr11:33358660 chr11:33358655 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_42518 0 0 0 3 2 HIPK3 chr11:33358621 3'AG 33358621 Downstream 35bp
chr11 33358655 33358655 1 + G A UCEC 33358660 + 33358640 33358680 41 CTCAAGGTTTGCCAGGAGAACAGTTGTTAAATGTGGGTACT CTCAAGGTTTGCCAGAAGAACAGTTGTTAAATGTGGGTACT < 41bp 1 0.199076537553222 1 0.115263879299164 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HIPK3 ENSG00000110422 CDS Human protein_coding chr11:33358660 chr11:33358655 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_42518 0 0 0 3 2 HIPK3 chr11:33358740 5'GT 33358740 Upstream 86bp
chr1 12027096 12027096 1 + A C UCEC 12027087 + 12027067 12027107 41 CCCCATCTTCACGGAGGTGGCCTGTGATGAGCTGGTGGAGG CCCCATCTTCACGGAGGTGGCCTGTGATGCGCTGGTGGAGG < 41bp 1 0.209854006582732 1 0.118773102760315 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027087 chr1:12027096 nonsynonymous SNV 0.989 4 30 hm5C_associated_SNPs_42519 0 0 1 0 2 PLOD1 chr1:12027044 3'AG 12027044 Downstream 53bp
chr1 12027096 12027096 1 + A C UCEC 12027087 + 12027067 12027107 41 CCCCATCTTCACGGAGGTGGCCTGTGATGAGCTGGTGGAGG CCCCATCTTCACGGAGGTGGCCTGTGATGCGCTGGTGGAGG < 41bp 1 0.209854006582732 1 0.118773102760315 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027087 chr1:12027096 nonsynonymous SNV 0.989 4 30 hm5C_associated_SNPs_42519 0 0 1 0 2 PLOD1 chr1:12027148 5'GT 12027148 Upstream 53bp
chr16 845189 845189 1 + T C UCEC 845172 + 845152 845192 41 GCGTCTGCGGCTGCGAGACTCCAGCCTGGGTGCTGTGTGTG GCGTCTGCGGCTGCGAGACTCCAGCCTGGGTGCTGTGCGTG < 41bp 1 0.332293525279355 1 0.386926561594009 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845172 chr16:845189 nonsynonymous SNV 0.124 4 38 hm5C_associated_SNPs_42520 0 0 1 0 1 CHTF18 chr16:845132 3'AG 845132 Downstream 58bp
chr14 23794471 23794471 1 + G A UCEC 23794459 + 23794439 23794479 41 CTCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCATG CTCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCAACATCATG < 41bp 1 0.275005368109227 1 0.216796487569809 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23794459 chr14:23794471 synonymous SNV . 0 33 hm5C_associated_SNPs_42521 0 0 1 0 1 BCL2L2-PABPN1;PABPN1 chr14:23794456 3'AG 23794456 Downstream 16bp
chr14 23794471 23794471 1 + G A UCEC 23794460 + 23794440 23794480 41 TCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCATGG TCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCAACATCATGG < 41bp 1 0.426437284792031 1 0.421277284622192 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23794460 chr14:23794471 synonymous SNV . 0 32 hm5C_associated_SNPs_42522 0 0 1 0 1 BCL2L2-PABPN1;PABPN1 chr14:23794456 3'AG 23794456 Downstream 16bp
chr8 11679280 11679280 1 + C A UCEC 11679261 + 11679241 11679281 41 TTACGGTTTCCATTTCAGATCTCCCTTGAGTTTAGAAATCT TTACGGTTTCCATTTCAGATCTCCCTTGAGTTTAGAAATAT < 41bp 1 0.238330409270666 1 0.037088930606842 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FDFT1 ENSG00000079459 CDS Human protein_coding chr8:11679261 chr8:11679280 nonsynonymous SNV 0.997 4 40 hm5C_associated_SNPs_42523 0 0 1 0 1 FDFT1 chr8:11679259 3'AG 11679259 Downstream 22bp
chr11 62550244 62550244 1 + C T UCEC 62550249 + 62550229 62550269 41 GCAGATCCTGTGCGGCCGCTCTGCTGCCACTATGGAGCCGT GCAGATCCTGTGCGGTCGCTCTGCTGCCACTATGGAGCCGT < 41bp 1 0.724914082629176 1 0.493057101964951 experiment 0.550171834741647 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF6L ENSG00000162227 CDS Human protein_coding chr11:62550249 chr11:62550244 nonsynonymous SNV 0.999 3 16 hm5C_associated_SNPs_42524 0 0 1 0 2 TAF6L chr11:62550165 3'AG 62550165 Downstream 80bp
chr11 62550244 62550244 1 + C T UCEC 62550249 + 62550229 62550269 41 GCAGATCCTGTGCGGCCGCTCTGCTGCCACTATGGAGCCGT GCAGATCCTGTGCGGTCGCTCTGCTGCCACTATGGAGCCGT < 41bp 1 0.724914082629176 1 0.493057101964951 experiment 0.550171834741647 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF6L ENSG00000162227 CDS Human protein_coding chr11:62550249 chr11:62550244 nonsynonymous SNV 0.999 3 16 hm5C_associated_SNPs_42524 0 0 1 0 2 TAF6L chr11:62550297 5'GT 62550297 Upstream 54bp
chr19 4954446 4954446 1 + G T UCEC 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGTGGGGCTTCGCGTCCCCCAGGACGGGCAAGG < 41bp 1 0.267717529051912 1 0.535599231719971 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954446 . 0.000 1 11 hm5C_associated_SNPs_42527 0 0 0 0 2 UHRF1 chr19:4954362 3'AG 4954362 Downstream 85bp
chr19 4954446 4954446 1 + G T UCEC 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGTGGGGCTTCGCGTCCCCCAGGACGGGCAAGG < 41bp 1 0.267717529051912 1 0.535599231719971 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954446 . 0.000 1 11 hm5C_associated_SNPs_42527 0 0 0 0 2 UHRF1 chr19:4954500 5'GT 4954500 Upstream 55bp
chr19 4954446 4954446 1 + G T UCEC 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGTGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA < 41bp 1 0.539188160873981 1 0.48627096414566 experiment 0.921623678252038 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954446 . 0.000 1 7 hm5C_associated_SNPs_42528 0 0 0 0 2 UHRF1 chr19:4954362 3'AG 4954362 Downstream 85bp
chr19 4954446 4954446 1 + G T UCEC 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGTGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA < 41bp 1 0.539188160873981 1 0.48627096414566 experiment 0.921623678252038 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954446 . 0.000 1 7 hm5C_associated_SNPs_42528 0 0 0 0 2 UHRF1 chr19:4954500 5'GT 4954500 Upstream 55bp
chr2 24888632 24888632 1 + G A UCEC 24888633 + 24888613 24888653 41 AACAGCACGGAAAAGAGGCGCAGGGAGCAAGAAAATAAATA AACAGCACGGAAAAGAGGCACAGGGAGCAAGAAAATAAATA < 41bp 1 0.333660214063979 1 0.540680348873138 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24888633 chr2:24888632 nonsynonymous SNV 1.000 5 20 hm5C_associated_SNPs_42530 0 0 1 0 1 NCOA1 chr2:24888618 3'AG 24888618 Downstream 15bp
chr16 56659785 56659785 1 + G A UCEC 56659789 + 56659769 56659809 41 CCCCAACTGCTCTTGCGCCACTGGTAAGGGAAGCTCTGCGC CCCCAACTGCTCTTGCACCACTGGTAAGGGAAGCTCTGCGC < 41bp 1 0.698556618685714 1 0.448570430278778 experiment 0.602886762628573 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MT1E ENSG00000169715 CDS Human protein_coding chr16:56659789 chr16:56659785 nonsynonymous SNV 0.951 0 17 hm5C_associated_SNPs_42531 0 0 1 0 1 MT1E chr16:56659791 5'GT 56659791 Upstream 7bp
chr1 65684532 65684532 1 + G T UCEC 65684546 + 65684526 65684566 41 CTTAAAGATCGTCTCAGCCGCCGTTGGATTCACCCTCCTAG CTTAAATATCGTCTCAGCCGCCGTTGGATTCACCCTCCTAG < 41bp 1 0.0786748413588775 1 0.121007204055786 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AK4 ENSG00000162433 CDS Human protein_coding chr1:65684546 chr1:65684532 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_42532 0 0 0 0 2 AK4 chr1:65684437 3'AG 65684437 Downstream 96bp
chr1 65684532 65684532 1 + G T UCEC 65684546 + 65684526 65684566 41 CTTAAAGATCGTCTCAGCCGCCGTTGGATTCACCCTCCTAG CTTAAATATCGTCTCAGCCGCCGTTGGATTCACCCTCCTAG < 41bp 1 0.0786748413588775 1 0.121007204055786 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AK4 ENSG00000162433 CDS Human protein_coding chr1:65684546 chr1:65684532 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_42532 0 0 0 0 2 AK4 chr1:65684609 5'GT 65684609 Upstream 78bp
chr4 110581369 110581369 1 + G T UCEC 110581382 + 110581362 110581402 41 ATTTATAGACATGGCCTTCCCTTGGTAACACTTACCTTGCC ATTTATATACATGGCCTTCCCTTGGTAACACTTACCTTGCC < 41bp 1 0.616880716738651 1 0.361482322216034 experiment 0.766238566522699 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCUB ENSG00000005059 CDS Human protein_coding chr4:110581382 chr4:110581369 nonsynonymous SNV 0.991 2 8 hm5C_associated_SNPs_42533 0 0 1 0 1 MCUB chr4:110581351 3'AG 110581351 Downstream 19bp
chr19 36572463 36572463 1 + C A UCEC 36572466 + 36572446 36572486 41 CACTGGCAGAAAAACATCTTCAGCAATGTGAGTGGCTTCCT CACTGGCAGAAAAACATATTCAGCAATGTGAGTGGCTTCCT < 41bp 1 0.639301434155118 1 0.673614382743835 experiment 0.721397131689765 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36572466 chr19:36572463 synonymous SNV . 0 18 hm5C_associated_SNPs_42534 0 0 1 0 1 WDR62 chr19:36572472 5'GT 36572472 Upstream 10bp
chr5 138994181 138994181 1 + G A UCEC 138994200 + 138994180 138994220 41 GGCAAGCTACAATAATGGGGCCAGTAAGTATTCAGATTAAT GACAAGCTACAATAATGGGGCCAGTAAGTATTCAGATTAAT < 41bp 1 0.0496387442643511 1 0.0743628442287445 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE2D2 ENSG00000131508 CDS Human protein_coding chr5:138994200 chr5:138994181 stopgain 1.000 1 2 hm5C_associated_SNPs_42535 0 0 1 0 1 UBE2D2 chr5:138994202 5'GT 138994202 Upstream 22bp
chrX 123224572 123224572 1 + A G UCEC 123224558 + 123224538 123224578 41 AGATTACGGCCTGAGGATAGCTTCATGAGTGTTTATCCAAT AGATTACGGCCTGAGGATAGCTTCATGAGTGTTTGTCCAAT < 41bp 1 0.513668491893146 1 0.122413009405136 experiment 0.972663016213709 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123224558 chrX:123224572 nonsynonymous SNV 0.996 2 35 hm5C_associated_SNPs_42537 0 0 1 0 1 STAG2 chrX:123224614 5'GT 123224614 Upstream 43bp
chr11 107968463 107968463 1 + A G UCEC 107968473 + 107968453 107968493 41 TTCTCAGTGAACCAGGAGTTCAGTTTAATGTAAGCTCGTTA TTCTCAGTGAGCCAGGAGTTCAGTTTAATGTAAGCTCGTTA < 41bp 1 0.278065031999705 1 0.200038969516754 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL5 ENSG00000166266 CDS Human protein_coding chr11:107968473 chr11:107968463 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_42538 0 0 1 0 1 CUL5 chr11:107968481 5'GT 107968481 Upstream 19bp
chr10 102672917 102672917 1 + C A UCEC 102672904 + 102672884 102672924 41 TGCCCGCTAGGCCAGGTTTCCCCTCATCCCCAGCCCCGGGG TGCCCGCTAGGCCAGGTTTCCCCTCATCCCCAGACCCGGGG < 41bp 1 0.266862908384134 1 0.0878105163574219 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLF2 ENSG00000119906 CDS Human protein_coding chr10:102672904 chr10:102672917 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_42540 0 0 1 0 1 SLF2 chr10:102673007 5'GT 102673007 Upstream 91bp
chr2 204082005 204082005 1 + T G UCEC 204082013 + 204081993 204082033 41 TTCTCGAAAATTTTGGGGATCGAGCAAGCGGCTCAGCCAGA TTCTCGAAAATTGTGGGGATCGAGCAAGCGGCTCAGCCAGA < 41bp 1 0.264571303055722 1 0.371687531471252 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204082013 chr2:204082005 nonsynonymous SNV 0.998 0 13 hm5C_associated_SNPs_42541 0 0 1 0 1 NBEAL1 chr2:204081976 3'AG 204081976 Downstream 30bp
chr7 128486883 128486883 1 + C A UCEC 128486898 + 128486878 128486918 41 GGTAGCTGCACCGTGGAGTACATCCCCTTCACTCCTGGAGA GGTAGATGCACCGTGGAGTACATCCCCTTCACTCCTGGAGA < 41bp 1 0.0485578064757967 1 0.0515612959861755 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486898 chr7:128486883 nonsynonymous SNV 0.992 5 6 hm5C_associated_SNPs_42542 0 0 0 0 2 FLNC chr7:128486799 3'AG 128486799 Downstream 85bp
chr7 128486883 128486883 1 + C A UCEC 128486898 + 128486878 128486918 41 GGTAGCTGCACCGTGGAGTACATCCCCTTCACTCCTGGAGA GGTAGATGCACCGTGGAGTACATCCCCTTCACTCCTGGAGA < 41bp 1 0.0485578064757967 1 0.0515612959861755 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486898 chr7:128486883 nonsynonymous SNV 0.992 5 6 hm5C_associated_SNPs_42542 0 0 0 0 2 FLNC chr7:128486959 5'GT 128486959 Upstream 77bp
chr12 57588462 57588462 1 + G A UCEC 57588474 + 57588454 57588494 41 TGAACATGGCGAGGACGAGACCCACTGCAGTGAGTGACCAC TGAACATGACGAGGACGAGACCCACTGCAGTGAGTGACCAC < 41bp 1 0.0288748672830388 1 0.0284607112407684 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57588474 chr12:57588462 nonsynonymous SNV 0.952 4 9 hm5C_associated_SNPs_42543 0 0 1 0 1 LRP1 chr12:57588482 5'GT 57588482 Upstream 21bp
chr19 18971131 18971131 1 + G A UCEC 18971127 + 18971107 18971147 41 TACTTCTTTCCCTCCCCTCACAGCGGATCGTGTGAAGAAGG TACTTCTTTCCCTCCCCTCACAGCAGATCGTGTGAAGAAGG < 41bp 1 0.199544399360779 1 0.475180745124817 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18971127 chr19:18971131 synonymous SNV . 0 25 hm5C_associated_SNPs_42550 0 0 1 0 1 UPF1 chr19:18971130 3'AG 18971130 Downstream 2bp
chr6 31638950 31638950 1 + C T UCEC 31638959 + 31638939 31638979 41 TTCCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAAGAC TTCCCGACATCTGGACGTGCCACTTCTGCCTCGTAGAAGAC < 41bp 1 0.29150893555523 1 0.044761598110199 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LY6G5B ENSG00000240053;ENSG00000263020 CDS Human other chr6:31638959 chr6:31638950 nonsynonymous SNV 0.067 3 12 hm5C_associated_SNPs_42552 0 0 1 0 1 LY6G5B chr6:31638933 3'AG 31638933 Downstream 18bp
chr6 31638950 31638950 1 + C T UCEC 31638961 + 31638941 31638981 41 CCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAAGACCC CCCGACATCTGGACGTGCCACTTCTGCCTCGTAGAAGACCC < 41bp 1 0.341837947709164 1 0.0358472466468811 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LY6G5B ENSG00000240053;ENSG00000263020 CDS Human other chr6:31638961 chr6:31638950 nonsynonymous SNV 0.067 3 10 hm5C_associated_SNPs_42553 0 0 1 0 1 LY6G5B chr6:31638933 3'AG 31638933 Downstream 18bp
chr10 75871763 75871763 1 + G A UCEC 75871762 + 75871742 75871782 41 GTCCCCCCTGACATGGAAGACGATTACGAACCTGAGCTGCT GTCCCCCCTGACATGGAAGACAATTACGAACCTGAGCTGCT < 41bp 1 0.0726682373934317 1 0.100912928581238 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75871762 chr10:75871763 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_42564 0 0 0 0 1 VCL chr10:75871667 3'AG 75871667 Downstream 97bp
chr3 37340487 37340487 1 + A C UCEC 37340497 + 37340477 37340517 41 TGGATGAAAGACTTCAAGAACTAGAAAAGATAAAGGTAAAA TGGATGAAAGCCTTCAAGAACTAGAAAAGATAAAGGTAAAA < 41bp 1 0.514008496267564 1 0.731858193874359 experiment 0.971983007464872 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37340497 chr3:37340487 nonsynonymous SNV 0.998 3 11 hm5C_associated_SNPs_42565 0 0 1 0 1 GOLGA4 chr3:37340511 5'GT 37340511 Upstream 25bp
chr17 60637472 60637472 1 + A C UCEC 60637473 + 60637453 60637493 41 GTGTGACAATGAGCAAGAAACTCCTTATAGAAAAGGTTAGT GTGTGACAATGAGCAAGAACCTCCTTATAGAAAAGGTTAGT < 41bp 1 0.216922044329782 1 0.0971100032329559 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TLK2 ENSG00000146872 CDS Human protein_coding chr17:60637473 chr17:60637472 nonsynonymous SNV 0.998 3 20 hm5C_associated_SNPs_42566 0 0 0 0 2 TLK2 chr17:60637377 3'AG 60637377 Downstream 96bp
chr17 60637472 60637472 1 + A C UCEC 60637473 + 60637453 60637493 41 GTGTGACAATGAGCAAGAAACTCCTTATAGAAAAGGTTAGT GTGTGACAATGAGCAAGAACCTCCTTATAGAAAAGGTTAGT < 41bp 1 0.216922044329782 1 0.0971100032329559 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TLK2 ENSG00000146872 CDS Human protein_coding chr17:60637473 chr17:60637472 nonsynonymous SNV 0.998 3 20 hm5C_associated_SNPs_42566 0 0 0 0 2 TLK2 chr17:60637487 5'GT 60637487 Upstream 16bp
chr11 557927 557927 1 - G A UCEC 557932 - 557912 557952 41 TGCCTCCTGCAGCTGGCCCGCTCCTCGTGGGTGGGCCGCAT TGCCTCCTGCAGCTGGCCCGCTCCTTGTGGGTGGGCCGCAT < 41bp 1 0.340997149516046 1 0.497283816337585 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMNTD2 ENSG00000185522 CDS Human protein_coding chr11:557932 chr11:557927 nonsynonymous SNV 0.284 0 26 hm5C_associated_SNPs_42567 0 0 0 0 1 LMNTD2 chr11:557884 5'GT 557884 Upstream 44bp
chr6 43168180 43168180 1 + C A UCEC 43168200 + 43168180 43168220 41 CTGGGCCAGATCGAAGACCACAGACGAACCCACCAACCCAT ATGGGCCAGATCGAAGACCACAGACGAACCCACCAACCCAT < 41bp 1 0.272347371557531 1 0.354589849710464 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CUL9 ENSG00000112659 CDS Human protein_coding chr6:43168200 chr6:43168180 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_42568 0 0 1 0 1 CUL9 chr6:43168174 3'AG 43168174 Downstream 7bp
chr4 123748442 123748442 1 + G A UCEC 123748458 + 123748438 123748478 41 GGGGGCTTCTTCCTGCGCATCCACCCCGACGGCCGAGTTGA GGGGACTTCTTCCTGCGCATCCACCCCGACGGCCGAGTTGA < 41bp 1 0.133018932392923 1 0.0398847758769989 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGF2 ENSG00000138685 CDS Human protein_coding chr4:123748458 chr4:123748442 nonsynonymous SNV 0.998 4 5 hm5C_associated_SNPs_42570 0 0 1 0 1 FGF2 chr4:123748507 5'GT 123748507 Upstream 66bp
chr4 123748442 123748442 1 + G A UCEC 123748462 + 123748442 123748482 41 GCTTCTTCCTGCGCATCCACCCCGACGGCCGAGTTGACGGG ACTTCTTCCTGCGCATCCACCCCGACGGCCGAGTTGACGGG < 41bp 1 0.725499109230538 1 0.119404673576355 experiment 0.549001781538925 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGF2 ENSG00000138685 CDS Human protein_coding chr4:123748462 chr4:123748442 nonsynonymous SNV 0.998 4 1 hm5C_associated_SNPs_42571 0 0 1 0 1 FGF2 chr4:123748507 5'GT 123748507 Upstream 66bp
chr9 116972007 116972007 1 + G A UCEC 116971988 + 116971968 116972008 41 TCCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACGA TCCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACAA < 41bp 1 0.162118842242027 1 0.739433586597443 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971988 chr9:116972007 nonsynonymous SNV 0.981 4 40 hm5C_associated_SNPs_42572 0 0 1 0 2 COL27A1 chr9:116971955 3'AG 116971955 Downstream 53bp
chr9 116972007 116972007 1 + G A UCEC 116971988 + 116971968 116972008 41 TCCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACGA TCCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACAA < 41bp 1 0.162118842242027 1 0.739433586597443 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971988 chr9:116972007 nonsynonymous SNV 0.981 4 40 hm5C_associated_SNPs_42572 0 0 1 0 2 COL27A1 chr9:116972008 5'GT 116972008 Upstream 2bp
chr9 116972007 116972007 1 + G A UCEC 116971989 + 116971969 116972009 41 CCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACGAG CCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACAAG < 41bp 1 0.313335437254674 1 0.705039858818054 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971989 chr9:116972007 nonsynonymous SNV 0.981 4 39 hm5C_associated_SNPs_42573 0 0 1 0 2 COL27A1 chr9:116971955 3'AG 116971955 Downstream 53bp
chr9 116972007 116972007 1 + G A UCEC 116971989 + 116971969 116972009 41 CCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACGAG CCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACAAG < 41bp 1 0.313335437254674 1 0.705039858818054 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971989 chr9:116972007 nonsynonymous SNV 0.981 4 39 hm5C_associated_SNPs_42573 0 0 1 0 2 COL27A1 chr9:116972008 5'GT 116972008 Upstream 2bp
chr22 18650778 18650778 1 + T C UCEC 18650766 + 18650746 18650786 41 CATGCTCACCCTCCCACTTTCTCTTTTTGATGTGGACTCAA CATGCTCACCCTCCCACTTTCTCTTTTTGATGCGGACTCAA < 41bp 1 0.284936658170974 1 0.113678425550461 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USP18 ENSG00000184979 CDS Human protein_coding chr22:18650766 chr22:18650778 nonsynonymous SNV 0.044 0 33 hm5C_associated_SNPs_42574 0 0 0 0 1 USP18 chr22:18650803 5'GT 18650803 Upstream 26bp
chr22 30038247 30038247 1 + C T UCEC 30038248 + 30038228 30038268 41 CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG CTCCTGAGGCTTCTGTGCTTCTGGCTTCTTACGCCGTCCAG < 41bp 1 0.73664269416514 1 0.638636350631714 experiment 0.52671461166972 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30038248 chr22:30038247 synonymous SNV . 0 20 hm5C_associated_SNPs_42575 0 0 1 0 2 NF2 chr22:30038191 3'AG 30038191 Downstream 57bp
chr22 30038247 30038247 1 + C T UCEC 30038248 + 30038228 30038268 41 CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG CTCCTGAGGCTTCTGTGCTTCTGGCTTCTTACGCCGTCCAG < 41bp 1 0.73664269416514 1 0.638636350631714 experiment 0.52671461166972 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30038248 chr22:30038247 synonymous SNV . 0 20 hm5C_associated_SNPs_42575 0 0 1 0 2 NF2 chr22:30038274 5'GT 30038274 Upstream 28bp
chr6 41557793 41557793 1 + G A UCEC 41557781 + 41557761 41557801 41 TTCCCAGATGGTCTCGTGCACCCCCCGACCTCGGCCGCAGC TTCCCAGATGGTCTCGTGCACCCCCCGACCTCAGCCGCAGC < 41bp 1 0.116781669903749 1 0.0395050346851349 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41557781 chr6:41557793 synonymous SNV . 0 33 hm5C_associated_SNPs_42576 0 0 1 0 2 FOXP4 chr6:41557701 3'AG 41557701 Downstream 93bp
chr6 41557793 41557793 1 + G A UCEC 41557781 + 41557761 41557801 41 TTCCCAGATGGTCTCGTGCACCCCCCGACCTCGGCCGCAGC TTCCCAGATGGTCTCGTGCACCCCCCGACCTCAGCCGCAGC < 41bp 1 0.116781669903749 1 0.0395050346851349 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41557781 chr6:41557793 synonymous SNV . 0 33 hm5C_associated_SNPs_42576 0 0 1 0 2 FOXP4 chr6:41557737 3'AG 41557737 Downstream 57bp
chr2 27257073 27257073 1 + C A UCEC 27257075 + 27257055 27257095 41 AGCCAAAGAAGGTGGCAACTCCTCCCAACCAAAACCAGAAG AGCCAAAGAAGGTGGCAAATCCTCCCAACCAAAACCAGAAG < 41bp 1 0.120516462957851 1 0.301713883876801 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27257075 chr2:27257073 nonsynonymous SNV 0.003 1 19 hm5C_associated_SNPs_42577 0 0 1 0 1 TMEM214 chr2:27257134 5'GT 27257134 Upstream 62bp
chr19 45162148 45162148 1 + A G UCEC 45162132 + 45162112 45162152 41 TCTATTGGTCCAAATGTTCCCGTGAGGTCCTTTGGCACTGT TCTATTGGTCCAAATGTTCCCGTGAGGTCCTTTGGCGCTGT < 41bp 1 0.676793552142939 1 0.621363997459412 experiment 0.646412895714121 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45162132 chr19:45162148 nonsynonymous SNV 0.000 1 37 hm5C_associated_SNPs_42578 0 0 1 0 1 PVR chr19:45162168 5'GT 45162168 Upstream 21bp
chr19 45162148 45162148 1 + A G UCEC 45162140 + 45162120 45162160 41 TCCAAATGTTCCCGTGAGGTCCTTTGGCACTGTCATCTGTG TCCAAATGTTCCCGTGAGGTCCTTTGGCGCTGTCATCTGTG < 41bp 1 0.0277139774529658 1 0.0629242360591888 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45162140 chr19:45162148 nonsynonymous SNV 0.000 1 29 hm5C_associated_SNPs_42579 0 0 1 0 1 PVR chr19:45162168 5'GT 45162168 Upstream 21bp
chr7 2686526 2686526 1 + G A UCEC 2686507 + 2686487 2686527 41 GCCCTGCTGCTCCTGGGGGCCGCCGCCCTGGCCTGCCTCGC GCCCTGCTGCTCCTGGGGGCCGCCGCCCTGGCCTGCCTCAC < 41bp 1 0.559754331288726 1 0.764960765838623 experiment 0.880491337422549 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686507 chr7:2686526 nonsynonymous SNV 0.990 3 40 hm5C_associated_SNPs_42582 0 0 1 0 1 TTYH3 chr7:2686487 3'AG 2686487 Downstream 40bp
chr12 101520843 101520843 1 + C T UCEC 101520850 + 101520830 101520870 41 CCACAACGAGTGGCCGTGACCATGTAGGTGAGAGGTGTGCT CCACAACGAGTGGTCGTGACCATGTAGGTGAGAGGTGTGCT < 41bp 1 0.422872825128595 1 0.329457938671112 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANO4 ENSG00000151572 CDS Human protein_coding chr12:101520850 chr12:101520843 nonsynonymous SNV 0.982 4 14 hm5C_associated_SNPs_42583 0 0 0 0 2 ANO4 chr12:101520852 5'GT 101520852 Upstream 10bp
chr12 101520843 101520843 1 + C T UCEC 101520850 + 101520830 101520870 41 CCACAACGAGTGGCCGTGACCATGTAGGTGAGAGGTGTGCT CCACAACGAGTGGTCGTGACCATGTAGGTGAGAGGTGTGCT < 41bp 1 0.422872825128595 1 0.329457938671112 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANO4 ENSG00000151572 CDS Human protein_coding chr12:101520850 chr12:101520843 nonsynonymous SNV 0.982 4 14 hm5C_associated_SNPs_42583 0 0 0 0 2 ANO4 chr12:101520856 5'GT 101520856 Upstream 14bp
chr1 20231420 20231420 1 + A C UCEC 20231415 + 20231395 20231435 41 AATAGTCCAGAACCTGGAAGCTGAAAATTATAATATTGAAT AATAGTCCAGAACCTGGAAGCTGAACATTATAATATTGAAT < 41bp 1 0.259258936116315 1 0.382936477661133 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OTUD3 ENSG00000169914 CDS Human protein_coding chr1:20231415 chr1:20231420 nonsynonymous SNV 1.000 0 26 hm5C_associated_SNPs_42584 0 0 1 0 2 OTUD3 chr1:20231384 3'AG 20231384 Downstream 37bp
chr1 20231420 20231420 1 + A C UCEC 20231415 + 20231395 20231435 41 AATAGTCCAGAACCTGGAAGCTGAAAATTATAATATTGAAT AATAGTCCAGAACCTGGAAGCTGAACATTATAATATTGAAT < 41bp 1 0.259258936116315 1 0.382936477661133 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OTUD3 ENSG00000169914 CDS Human protein_coding chr1:20231415 chr1:20231420 nonsynonymous SNV 1.000 0 26 hm5C_associated_SNPs_42584 0 0 1 0 2 OTUD3 chr1:20231480 5'GT 20231480 Upstream 61bp
chr5 131973782 131973782 1 + A G UCEC 131973793 + 131973773 131973813 41 ATATTGAATACATAGAAATACGGTCTGATGCCGATGAAAAT ATATTGAATGCATAGAAATACGGTCTGATGCCGATGAAAAT < 41bp 1 0.105391431402809 1 0.147036492824554 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131973793 chr5:131973782 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_42585 0 0 1 0 1 RAD50 chr5:131973773 3'AG 131973773 Downstream 10bp
chr11 123989019 123989019 1 + G A UCEC 123989020 + 123989000 123989040 41 CCAACCTGGGTCGAAGGCGGCAGTCACCCTGAAGTATGTGC CCAACCTGGGTCGAAGGCGACAGTCACCCTGAAGTATGTGC < 41bp 1 0.176857076388443 1 0.159833520650864 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VWA5A ENSG00000110002 CDS Human protein_coding chr11:123989020 chr11:123989019 nonsynonymous SNV 0.106 0 20 hm5C_associated_SNPs_42586 0 0 0 0 1 VWA5A chr11:123989118 5'GT 123989118 Upstream 100bp
chr19 39944008 39944008 1 + C T UCEC 39944021 + 39944001 39944041 41 CGAAGAGCGGCGGAGTGCAGCGGGCAGTGAGAAAGAAGAAG CGAAGAGTGGCGGAGTGCAGCGGGCAGTGAGAAAGAAGAAG < 41bp 1 0.654253393380366 1 0.831600666046143 experiment 0.691493213239267 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944021 chr19:39944008 nonsynonymous SNV 0.771 2 8 hm5C_associated_SNPs_42587 0 0 1 0 1 SUPT5H chr19:39943996 3'AG 39943996 Downstream 13bp
chr19 39944008 39944008 1 + C T UCEC 39944025 + 39944005 39944045 41 GAGCGGCGGAGTGCAGCGGGCAGTGAGAAAGAAGAAGAGCC GAGTGGCGGAGTGCAGCGGGCAGTGAGAAAGAAGAAGAGCC < 41bp 1 0.352000085085906 1 0.416242837905884 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944025 chr19:39944008 nonsynonymous SNV 0.771 2 4 hm5C_associated_SNPs_42588 0 0 1 0 1 SUPT5H chr19:39943996 3'AG 39943996 Downstream 13bp
chr19 3525941 3525941 1 + A C UCEC 3525949 + 3525929 3525969 41 GGAGACCGCTTCATCCCCTCCAGAGCCGGAGCCAACTGGAG GGAGACCGCTTCCTCCCCTCCAGAGCCGGAGCCAACTGGAG < 41bp 1 0.433109378548596 1 0.834765076637268 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3525949 chr19:3525941 nonsynonymous SNV 0.983 4 13 hm5C_associated_SNPs_42592 0 0 1 0 2 FZR1 chr19:3525866 3'AG 3525866 Downstream 76bp
chr19 3525941 3525941 1 + A C UCEC 3525949 + 3525929 3525969 41 GGAGACCGCTTCATCCCCTCCAGAGCCGGAGCCAACTGGAG GGAGACCGCTTCCTCCCCTCCAGAGCCGGAGCCAACTGGAG < 41bp 1 0.433109378548596 1 0.834765076637268 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3525949 chr19:3525941 nonsynonymous SNV 0.983 4 13 hm5C_associated_SNPs_42592 0 0 1 0 2 FZR1 chr19:3525991 5'GT 3525991 Upstream 51bp
chr3 49736445 49736445 1 + A G UCEC 49736459 + 49736439 49736479 41 TTGAGAACCTGTCCAGGGGCCTGGGTATGGCCTACTTCCCA TTGAGAGCCTGTCCAGGGGCCTGGGTATGGCCTACTTCCCA < 41bp 1 0.557704395532724 1 0.1335229575634 experiment 0.884591208934553 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49736459 chr3:49736445 nonsynonymous SNV 0.943 2 7 hm5C_associated_SNPs_42593 0 0 1 0 1 RNF123 chr3:49736413 3'AG 49736413 Downstream 33bp
chr2 128944280 128944280 1 + T G UCEC 128944260 + 128944240 128944280 41 TTTTTTTAACCAAACAGGATCTGCCCAATAACATGATTCAT TTTTTTTAACCAAACAGGATCTGCCCAATAACATGATTCAG < 41bp 1 0.0470397378806748 1 0.168133944272995 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128944260 chr2:128944280 nonsynonymous SNV 0.998 4 41 hm5C_associated_SNPs_42595 0 0 1 0 2 UGGT1 chr2:128944257 3'AG 128944257 Downstream 24bp
chr2 128944280 128944280 1 + T G UCEC 128944260 + 128944240 128944280 41 TTTTTTTAACCAAACAGGATCTGCCCAATAACATGATTCAT TTTTTTTAACCAAACAGGATCTGCCCAATAACATGATTCAG < 41bp 1 0.0470397378806748 1 0.168133944272995 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128944260 chr2:128944280 nonsynonymous SNV 0.998 4 41 hm5C_associated_SNPs_42595 0 0 1 0 2 UGGT1 chr2:128944373 5'GT 128944373 Upstream 94bp
chr18 34289063 34289063 1 + G A UCEC 34289065 + 34289045 34289085 41 TTGTCTCCACCAGCAAGTGCCGGGGATCCTGAACCCGAATC TTGTCTCCACCAGCAAGTACCGGGGATCCTGAACCCGAATC < 41bp 1 0.672592724392766 1 0.911352753639221 experiment 0.654814551214469 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34289065 chr18:34289063 nonsynonymous SNV 0.099 0 19 hm5C_associated_SNPs_42596 0 0 0 0 1 FHOD3 chr18:34289058 3'AG 34289058 Downstream 6bp
chr3 51315081 51315081 1 + C A UCEC 51315093 + 51315073 51315113 41 TGGAGAGCCTCCTGGACGTGCTCTTGCAGACTCTGCTCACC TGGAGAGCATCCTGGACGTGCTCTTGCAGACTCTGCTCACC < 41bp 1 0.101654584656181 1 0.0538749098777771 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DOCK3 ENSG00000088538 CDS Human protein_coding chr3:51315093 chr3:51315081 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_42598 0 0 1 0 1 DOCK3 chr3:51315039 3'AG 51315039 Downstream 43bp
chr20 55049753 55049753 1 + G A UCEC 55049773 + 55049753 55049793 41 GTCATTGAATTTCTCTTGGACAAATCTGCAGAAAAGGCTCT ATCATTGAATTTCTCTTGGACAAATCTGCAGAAAAGGCTCT < 41bp 1 0.113756948904113 1 0.145820409059525 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55049773 chr20:55049753 nonsynonymous SNV 0.954 0 1 hm5C_associated_SNPs_42605 0 0 1 0 2 RTFDC1 chr20:55049734 3'AG 55049734 Downstream 20bp
chr20 55049753 55049753 1 + G A UCEC 55049773 + 55049753 55049793 41 GTCATTGAATTTCTCTTGGACAAATCTGCAGAAAAGGCTCT ATCATTGAATTTCTCTTGGACAAATCTGCAGAAAAGGCTCT < 41bp 1 0.113756948904113 1 0.145820409059525 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55049773 chr20:55049753 nonsynonymous SNV 0.954 0 1 hm5C_associated_SNPs_42605 0 0 1 0 2 RTFDC1 chr20:55049827 5'GT 55049827 Upstream 75bp
chr19 49100092 49100092 1 + G A UCEC 49100079 + 49100059 49100099 41 CTGGGCTCCGTCGTGGCACACTCAACCTTCAGCGCCATGAA CTGGGCTCCGTCGTGGCACACTCAACCTTCAGCACCATGAA < 41bp 1 0.732587352990835 1 0.367264032363892 experiment 0.534825294018329 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49100079 chr19:49100092 nonsynonymous SNV 0.274 2 34 hm5C_associated_SNPs_42606 0 0 0 0 2 SULT2B1 chr19:49099996 3'AG 49099996 Downstream 97bp
chr19 49100092 49100092 1 + G A UCEC 49100079 + 49100059 49100099 41 CTGGGCTCCGTCGTGGCACACTCAACCTTCAGCGCCATGAA CTGGGCTCCGTCGTGGCACACTCAACCTTCAGCACCATGAA < 41bp 1 0.732587352990835 1 0.367264032363892 experiment 0.534825294018329 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49100079 chr19:49100092 nonsynonymous SNV 0.274 2 34 hm5C_associated_SNPs_42606 0 0 0 0 2 SULT2B1 chr19:49100176 5'GT 49100176 Upstream 85bp
chr7 44100376 44100376 1 + C T UCEC 44100392 + 44100372 44100412 41 GCAGCCGACGACACAGAGATCTCCTTTGACCCCGAGAACCT GCAGTCGACGACACAGAGATCTCCTTTGACCCCGAGAACCT < 41bp 1 0.52135883301081 1 0.343518793582916 experiment 0.957282333978381 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DBNL ENSG00000136279 CDS Human protein_coding chr7:44100392 chr7:44100376 nonsynonymous SNV 0.167 3 5 hm5C_associated_SNPs_42607 0 0 1 0 1 DBNL chr7:44100376 3'AG 44100376 Downstream 1bp
chr12 109604770 109604770 1 + G A UCEC 109604784 + 109604764 109604804 41 TCACACGCTTTGGGGGGGATCGGGTCATCGAGAAGGTACAG TCACACACTTTGGGGGGGATCGGGTCATCGAGAAGGTACAG < 41bp 1 0.541686739575447 1 0.752779722213745 experiment 0.916626520849106 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109604784 chr12:109604770 nonsynonymous SNV 0.975 3 7 hm5C_associated_SNPs_42608 0 0 1 0 1 ACACB chr12:109604798 5'GT 109604798 Upstream 29bp
chr18 77802168 77802168 1 + T C UCEC 77802159 + 77802139 77802179 41 CTTTTGATGTCCCAGCAGACCCTGAGGAATGTGCCACCGAT CTTTTGATGTCCCAGCAGACCCTGAGGAACGTGCCACCGAT < 41bp 1 0.57334642798511 1 0.176421970129013 experiment 0.85330714402978 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBFA ENSG00000101546 CDS Human protein_coding chr18:77802159 chr18:77802168 synonymous SNV . 0 30 hm5C_associated_SNPs_42609 0 0 1 0 2 RBFA chr18:77802135 3'AG 77802135 Downstream 34bp
chr18 77802168 77802168 1 + T C UCEC 77802159 + 77802139 77802179 41 CTTTTGATGTCCCAGCAGACCCTGAGGAATGTGCCACCGAT CTTTTGATGTCCCAGCAGACCCTGAGGAACGTGCCACCGAT < 41bp 1 0.57334642798511 1 0.176421970129013 experiment 0.85330714402978 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBFA ENSG00000101546 CDS Human protein_coding chr18:77802159 chr18:77802168 synonymous SNV . 0 30 hm5C_associated_SNPs_42609 0 0 1 0 2 RBFA chr18:77802219 5'GT 77802219 Upstream 52bp
chr1 31811841 31811841 1 + A C UCEC 31811833 + 31811813 31811853 41 GATAGAATAAAAGTATCCCTCTCCATGAAGGTTGTCAATCA GATAGAATAAAAGTATCCCTCTCCATGACGGTTGTCAATCA < 41bp 1 0.793321569348603 1 0.989364504814148 experiment 0.413356861302793 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZCCHC17 ENSG00000121766 CDS Human protein_coding chr1:31811833 chr1:31811841 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_42610 0 0 1 0 2 ZCCHC17 chr1:31811804 3'AG 31811804 Downstream 38bp
chr1 31811841 31811841 1 + A C UCEC 31811833 + 31811813 31811853 41 GATAGAATAAAAGTATCCCTCTCCATGAAGGTTGTCAATCA GATAGAATAAAAGTATCCCTCTCCATGACGGTTGTCAATCA < 41bp 1 0.793321569348603 1 0.989364504814148 experiment 0.413356861302793 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZCCHC17 ENSG00000121766 CDS Human protein_coding chr1:31811833 chr1:31811841 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_42610 0 0 1 0 2 ZCCHC17 chr1:31811895 5'GT 31811895 Upstream 55bp
chr7 98528424 98528424 1 + C A UCEC 98528441 + 98528421 98528461 41 CTTCTCTTTGTCATGATGGACTTAACTGGAGAGGTAGGTGA CTTATCTTTGTCATGATGGACTTAACTGGAGAGGTAGGTGA < 41bp 1 0.103495836038603 1 0.0800579488277435 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98528441 chr7:98528424 nonsynonymous SNV 0.999 1 4 hm5C_associated_SNPs_42611 0 0 1 0 1 TRRAP chr7:98528453 5'GT 98528453 Upstream 30bp
chr10 76729436 76729436 1 + A C UCEC 76729423 + 76729403 76729443 41 TTTTTATTCTCATAGGACACCCATCCTGTTTGAAATTTTGT TTTTTATTCTCATAGGACACCCATCCTGTTTGACATTTTGT < 41bp 1 0.00306168844661873 1 0.0770283043384552 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KAT6B ENSG00000156650 CDS Human protein_coding chr10:76729423 chr10:76729436 nonsynonymous SNV 1.000 5 34 hm5C_associated_SNPs_42612 0 0 1 0 2 KAT6B chr10:76729418 3'AG 76729418 Downstream 19bp
chr10 76729436 76729436 1 + A C UCEC 76729423 + 76729403 76729443 41 TTTTTATTCTCATAGGACACCCATCCTGTTTGAAATTTTGT TTTTTATTCTCATAGGACACCCATCCTGTTTGACATTTTGT < 41bp 1 0.00306168844661873 1 0.0770283043384552 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KAT6B ENSG00000156650 CDS Human protein_coding chr10:76729423 chr10:76729436 nonsynonymous SNV 1.000 5 34 hm5C_associated_SNPs_42612 0 0 1 0 2 KAT6B chr10:76729533 5'GT 76729533 Upstream 98bp
chr9 96427992 96427992 1 + G A UCEC 96427976 + 96427956 96427996 41 CTTCTGCCCTAGCTCCAAGGCTCTCAGGCCCCCGACGAGCC CTTCTGCCCTAGCTCCAAGGCTCTCAGGCCCCCGACAAGCC < 41bp 1 0.128858466187671 1 0.10044914484024 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96427976 chr9:96427992 synonymous SNV . 0 37 hm5C_associated_SNPs_42613 0 0 1 0 1 PHF2 chr9:96427968 3'AG 96427968 Downstream 25bp
chr11 68125236 68125236 1 + G A UCEC 68125248 + 68125228 68125268 41 TGACCATCGACCTGGAGGAGCAGAAGCTCTACTGGGCTGAC TGACCATCAACCTGGAGGAGCAGAAGCTCTACTGGGCTGAC < 41bp 1 0.398657101750798 1 0.49801766872406 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68125248 chr11:68125236 nonsynonymous SNV 0.993 4 9 hm5C_associated_SNPs_42614 0 0 1 0 1 LRP5 chr11:68125315 5'GT 68125315 Upstream 80bp
chr16 70589085 70589085 1 + G A UCEC 70589071 + 70589051 70589091 41 AGCGACAAGTGGTGATTGCCCTGACAGGAGGAGAGCTGGTC AGCGACAAGTGGTGATTGCCCTGACAGGAGGAGAACTGGTC < 41bp 1 0.27872067714265 1 0.170178830623627 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589071 chr16:70589085 synonymous SNV . 0 35 hm5C_associated_SNPs_42615 0 0 1 0 1 SF3B3 chr16:70589109 5'GT 70589109 Upstream 25bp
chr16 70589085 70589085 1 + G A UCEC 70589086 + 70589066 70589106 41 TTGCCCTGACAGGAGGAGAGCTGGTCTATTTCGAGATGGAT TTGCCCTGACAGGAGGAGAACTGGTCTATTTCGAGATGGAT < 41bp 1 0.249773827392358 1 0.187183886766434 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589086 chr16:70589085 synonymous SNV . 0 20 hm5C_associated_SNPs_42616 0 0 1 0 1 SF3B3 chr16:70589109 5'GT 70589109 Upstream 25bp
chr16 70589085 70589085 1 + G A UCEC 70589091 + 70589071 70589111 41 CTGACAGGAGGAGAGCTGGTCTATTTCGAGATGGATCCTGT CTGACAGGAGGAGAACTGGTCTATTTCGAGATGGATCCTGT < 41bp 1 0.0915385305607325 1 0.07593634724617 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589091 chr16:70589085 synonymous SNV . 0 15 hm5C_associated_SNPs_42617 0 0 1 0 1 SF3B3 chr16:70589109 5'GT 70589109 Upstream 25bp
chr3 5215727 5215727 1 + A G UCEC 5215729 + 5215709 5215749 41 TGCTTGGAAACAAGAGAGATCTTCCTAATGCCTTGGATGAG TGCTTGGAAACAAGAGAGGTCTTCCTAATGCCTTGGATGAG < 41bp 1 0.0798117041178507 1 0.0536289513111115 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARL8B ENSG00000134108 CDS Human protein_coding chr3:5215729 chr3:5215727 nonsynonymous SNV 1.000 5 19 hm5C_associated_SNPs_42618 0 0 1 0 2 ARL8B chr3:5215702 3'AG 5215702 Downstream 26bp
chr3 5215727 5215727 1 + A G UCEC 5215729 + 5215709 5215749 41 TGCTTGGAAACAAGAGAGATCTTCCTAATGCCTTGGATGAG TGCTTGGAAACAAGAGAGGTCTTCCTAATGCCTTGGATGAG < 41bp 1 0.0798117041178507 1 0.0536289513111115 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARL8B ENSG00000134108 CDS Human protein_coding chr3:5215729 chr3:5215727 nonsynonymous SNV 1.000 5 19 hm5C_associated_SNPs_42618 0 0 1 0 2 ARL8B chr3:5215769 5'GT 5215769 Upstream 43bp
chr12 112915759 112915759 1 + G A UCEC 112915765 + 112915745 112915785 41 GACTTTTGGCGGATGGTGTTCCAAGAAAACTCCCGAGTGAT GACTTTTGGCGGATAGTGTTCCAAGAAAACTCCCGAGTGAT < 41bp 1 0.284589537212332 1 0.271362066268921 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915765 chr12:112915759 nonsynonymous SNV 0.998 4 15 hm5C_associated_SNPs_42619 0 0 1 0 2 PTPN11 chr12:112915661 3'AG 112915661 Downstream 99bp
chr12 112915759 112915759 1 + G A UCEC 112915765 + 112915745 112915785 41 GACTTTTGGCGGATGGTGTTCCAAGAAAACTCCCGAGTGAT GACTTTTGGCGGATAGTGTTCCAAGAAAACTCCCGAGTGAT < 41bp 1 0.284589537212332 1 0.271362066268921 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915765 chr12:112915759 nonsynonymous SNV 0.998 4 15 hm5C_associated_SNPs_42619 0 0 1 0 2 PTPN11 chr12:112915819 5'GT 112915819 Upstream 61bp
chr12 112915759 112915759 1 + G A UCEC 112915766 + 112915746 112915786 41 ACTTTTGGCGGATGGTGTTCCAAGAAAACTCCCGAGTGATT ACTTTTGGCGGATAGTGTTCCAAGAAAACTCCCGAGTGATT < 41bp 1 0.749122127823223 1 0.259222239255905 experiment 0.501755744353553 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915766 chr12:112915759 nonsynonymous SNV 0.998 4 14 hm5C_associated_SNPs_42620 0 0 1 0 2 PTPN11 chr12:112915661 3'AG 112915661 Downstream 99bp
chr12 112915759 112915759 1 + G A UCEC 112915766 + 112915746 112915786 41 ACTTTTGGCGGATGGTGTTCCAAGAAAACTCCCGAGTGATT ACTTTTGGCGGATAGTGTTCCAAGAAAACTCCCGAGTGATT < 41bp 1 0.749122127823223 1 0.259222239255905 experiment 0.501755744353553 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915766 chr12:112915759 nonsynonymous SNV 0.998 4 14 hm5C_associated_SNPs_42620 0 0 1 0 2 PTPN11 chr12:112915819 5'GT 112915819 Upstream 61bp
chr1 7861184 7861184 1 + C T UCEC 7861204 + 7861184 7861224 41 CCAGTGAATAAAAGAATCTTCACCACCACACACACCCCAGG TCAGTGAATAAAAGAATCTTCACCACCACACACACCCCAGG < 41bp 1 0.601590341181694 1 0.438605219125748 experiment 0.796819317636613 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PER3 ENSG00000049246 CDS Human protein_coding chr1:7861204 chr1:7861184 nonsynonymous SNV 0.928 4 1 hm5C_associated_SNPs_42621 0 0 0 0 2 PER3 chr1:7861173 3'AG 7861173 Downstream 12bp
chr1 7861184 7861184 1 + C T UCEC 7861204 + 7861184 7861224 41 CCAGTGAATAAAAGAATCTTCACCACCACACACACCCCAGG TCAGTGAATAAAAGAATCTTCACCACCACACACACCCCAGG < 41bp 1 0.601590341181694 1 0.438605219125748 experiment 0.796819317636613 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PER3 ENSG00000049246 CDS Human protein_coding chr1:7861204 chr1:7861184 nonsynonymous SNV 0.928 4 1 hm5C_associated_SNPs_42621 0 0 0 0 2 PER3 chr1:7861251 5'GT 7861251 Upstream 68bp
chr6 4935981 4935981 1 + A G UCEC 4935980 + 4935960 4936000 41 CTTGTTATCCACAAAGTCCTCAGAGAATAACTCACTAAATC CTTGTTATCCACAAAGTCCTCGGAGAATAACTCACTAAATC < 41bp 1 0.694985945967313 1 0.857805252075195 experiment 0.610028108065373 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDYL ENSG00000153046 CDS Human protein_coding chr6:4935980 chr6:4935981 synonymous SNV . 0 22 hm5C_associated_SNPs_42622 0 0 1 0 1 CDYL chr6:4936005 5'GT 4936005 Upstream 25bp
chr19 50912082 50912082 1 + C A UCEC 50912092 + 50912072 50912112 41 CTTCTCCTCGCTGTACCCGTCCATCATGATGGCCCACAACC CTTCTCCTCGATGTACCCGTCCATCATGATGGCCCACAACC < 41bp 1 0.0236484174951916 1 0.0264444053173065 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912092 chr19:50912082 nonsynonymous SNV 0.937 4 11 hm5C_associated_SNPs_42623 0 0 1 0 2 POLD1 chr19:50912042 3'AG 50912042 Downstream 41bp
chr19 50912082 50912082 1 + C A UCEC 50912092 + 50912072 50912112 41 CTTCTCCTCGCTGTACCCGTCCATCATGATGGCCCACAACC CTTCTCCTCGATGTACCCGTCCATCATGATGGCCCACAACC < 41bp 1 0.0236484174951916 1 0.0264444053173065 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912092 chr19:50912082 nonsynonymous SNV 0.937 4 11 hm5C_associated_SNPs_42623 0 0 1 0 2 POLD1 chr19:50912158 5'GT 50912158 Upstream 77bp
chr19 52786571 52786571 1 + T C UCEC 52786569 + 52786549 52786589 41 CCTGACCTGAGTATTATCTCCATGATGAAGCAAAGGACAGA CCTGACCTGAGTATTATCTCCACGATGAAGCAAAGGACAGA < 41bp 1 0.773722581727767 1 0.28875470161438 experiment 0.452554836544466 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF766 ENSG00000196214 CDS Human protein_coding chr19:52786569 chr19:52786571 nonsynonymous SNV 0.013 0 23 hm5C_associated_SNPs_42624 0 0 1 0 2 ZNF766 chr19:52786538 3'AG 52786538 Downstream 34bp
chr19 52786571 52786571 1 + T C UCEC 52786569 + 52786549 52786589 41 CCTGACCTGAGTATTATCTCCATGATGAAGCAAAGGACAGA CCTGACCTGAGTATTATCTCCACGATGAAGCAAAGGACAGA < 41bp 1 0.773722581727767 1 0.28875470161438 experiment 0.452554836544466 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF766 ENSG00000196214 CDS Human protein_coding chr19:52786569 chr19:52786571 nonsynonymous SNV 0.013 0 23 hm5C_associated_SNPs_42624 0 0 1 0 2 ZNF766 chr19:52786666 5'GT 52786666 Upstream 96bp
chr15 69003166 69003166 1 + C A UCEC 69003148 + 69003128 69003168 41 CTGGAGCTGCACGGGCACAGCCGGCGTGTGGGGCTGGTCGA CTGGAGCTGCACGGGCACAGCCGGCGTGTGGGGCTGGTAGA < 41bp 1 0.531441576799187 1 0.497710168361664 experiment 0.937116846401627 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CORO2B ENSG00000103647 CDS Human protein_coding chr15:69003148 chr15:69003166 synonymous SNV . 0 39 hm5C_associated_SNPs_42626 0 0 0 0 2 CORO2B chr15:69003071 3'AG 69003071 Downstream 96bp
chr15 69003166 69003166 1 + C A UCEC 69003148 + 69003128 69003168 41 CTGGAGCTGCACGGGCACAGCCGGCGTGTGGGGCTGGTCGA CTGGAGCTGCACGGGCACAGCCGGCGTGTGGGGCTGGTAGA < 41bp 1 0.531441576799187 1 0.497710168361664 experiment 0.937116846401627 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CORO2B ENSG00000103647 CDS Human protein_coding chr15:69003148 chr15:69003166 synonymous SNV . 0 39 hm5C_associated_SNPs_42626 0 0 0 0 2 CORO2B chr15:69003220 5'GT 69003220 Upstream 55bp
chr1 120286589 120286589 1 + G A UCEC 120286594 + 120286574 120286614 41 ACCTGGCACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCT ACCTGGCACGTCATGAGCATCTCCTCCTTGCTGCCCAGCCT < 41bp 1 0.477433402032281 1 0.226268261671066 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286594 chr1:120286589 nonsynonymous SNV 0.999 1 16 hm5C_associated_SNPs_42631 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 81bp
chr1 120286589 120286589 1 + G A UCEC 120286596 + 120286576 120286616 41 CTGGCACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCTGG CTGGCACGTCATGAGCATCTCCTCCTTGCTGCCCAGCCTGG < 41bp 1 0.109570422897883 1 0.0671021938323975 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286596 chr1:120286589 nonsynonymous SNV 0.999 1 14 hm5C_associated_SNPs_42632 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 81bp
chr1 120286589 120286589 1 + G A UCEC 120286597 + 120286577 120286617 41 TGGCACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCTGGA TGGCACGTCATGAGCATCTCCTCCTTGCTGCCCAGCCTGGA < 41bp 1 0.472436851440958 1 0.228120416402817 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286597 chr1:120286589 nonsynonymous SNV 0.999 1 13 hm5C_associated_SNPs_42633 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 81bp
chr1 120286589 120286589 1 + G A UCEC 120286600 + 120286580 120286620 41 CACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCTGGAAGC CACGTCATGAGCATCTCCTCCTTGCTGCCCAGCCTGGAAGC < 41bp 1 0.306410307448295 1 0.220518678426743 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286600 chr1:120286589 nonsynonymous SNV 0.999 1 10 hm5C_associated_SNPs_42634 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 81bp
chr15 99491893 99491893 1 + G T UCEC 99491873 + 99491853 99491893 41 ACCAGGGCTTGTCCAACGAGCAAGTCCTTCGCTTCGTCATG ACCAGGGCTTGTCCAACGAGCAAGTCCTTCGCTTCGTCATT < 41bp 1 0.216212172345475 1 0.193023979663849 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient IGF1R ENSG00000140443 CDS Human protein_coding chr15:99491873 chr15:99491893 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_42637 0 0 1 0 2 IGF1R chr15:99491803 3'AG 99491803 Downstream 91bp
chr15 99491893 99491893 1 + G T UCEC 99491873 + 99491853 99491893 41 ACCAGGGCTTGTCCAACGAGCAAGTCCTTCGCTTCGTCATG ACCAGGGCTTGTCCAACGAGCAAGTCCTTCGCTTCGTCATT < 41bp 1 0.216212172345475 1 0.193023979663849 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient IGF1R ENSG00000140443 CDS Human protein_coding chr15:99491873 chr15:99491893 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_42637 0 0 1 0 2 IGF1R chr15:99491937 5'GT 99491937 Upstream 45bp
chr15 99491893 99491893 1 + G T UCEC 99491899 + 99491879 99491919 41 CTTCGCTTCGTCATGGAGGGCGGCCTTCTGGACAAGCCAGA CTTCGCTTCGTCATTGAGGGCGGCCTTCTGGACAAGCCAGA < 41bp 1 0.175150622225544 1 0.172218233346939 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IGF1R ENSG00000140443 CDS Human protein_coding chr15:99491899 chr15:99491893 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_42638 0 0 1 0 2 IGF1R chr15:99491803 3'AG 99491803 Downstream 91bp
chr15 99491893 99491893 1 + G T UCEC 99491899 + 99491879 99491919 41 CTTCGCTTCGTCATGGAGGGCGGCCTTCTGGACAAGCCAGA CTTCGCTTCGTCATTGAGGGCGGCCTTCTGGACAAGCCAGA < 41bp 1 0.175150622225544 1 0.172218233346939 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IGF1R ENSG00000140443 CDS Human protein_coding chr15:99491899 chr15:99491893 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_42638 0 0 1 0 2 IGF1R chr15:99491937 5'GT 99491937 Upstream 45bp
chr13 28752064 28752064 1 + A T UCEC 28752051 + 28752031 28752071 41 TTTAATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAA TTTAATGACTTTGGTGCCCTCAACATCTCTCAGTGACGAAA < 41bp 1 0.616624680734577 1 0.244082778692245 experiment 0.766750638530845 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752051 chr13:28752064 stopgain 1.000 1 34 hm5C_associated_SNPs_42639 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 63bp
chr13 28752064 28752064 1 + A T UCEC 28752051 + 28752031 28752071 41 TTTAATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAA TTTAATGACTTTGGTGCCCTCAACATCTCTCAGTGACGAAA < 41bp 1 0.616624680734577 1 0.244082778692245 experiment 0.766750638530845 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752051 chr13:28752064 stopgain 1.000 1 34 hm5C_associated_SNPs_42639 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 9bp
chr13 28752064 28752064 1 + A T UCEC 28752054 + 28752034 28752074 41 AATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGT AATGACTTTGGTGCCCTCAACATCTCTCAGTGACGAAAGGT < 41bp 1 0.0990036165996404 1 0.194623470306396 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752054 chr13:28752064 stopgain 1.000 1 31 hm5C_associated_SNPs_42640 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 63bp
chr13 28752064 28752064 1 + A T UCEC 28752054 + 28752034 28752074 41 AATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGT AATGACTTTGGTGCCCTCAACATCTCTCAGTGACGAAAGGT < 41bp 1 0.0990036165996404 1 0.194623470306396 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752054 chr13:28752064 stopgain 1.000 1 31 hm5C_associated_SNPs_42640 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 9bp
chr13 28752064 28752064 1 + A T UCEC 28752057 + 28752037 28752077 41 GACTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGG GACTTTGGTGCCCTCAACATCTCTCAGTGACGAAAGGTAGG < 41bp 1 0.124551478202074 1 0.120750308036804 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752057 chr13:28752064 stopgain 1.000 1 28 hm5C_associated_SNPs_42641 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 63bp
chr13 28752064 28752064 1 + A T UCEC 28752057 + 28752037 28752077 41 GACTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGG GACTTTGGTGCCCTCAACATCTCTCAGTGACGAAAGGTAGG < 41bp 1 0.124551478202074 1 0.120750308036804 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752057 chr13:28752064 stopgain 1.000 1 28 hm5C_associated_SNPs_42641 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 9bp
chr13 28752064 28752064 1 + A T UCEC 28752059 + 28752039 28752079 41 CTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGGTG CTTTGGTGCCCTCAACATCTCTCAGTGACGAAAGGTAGGTG < 41bp 1 0.537163135307791 1 0.186867296695709 experiment 0.925673729384418 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752059 chr13:28752064 stopgain 1.000 1 26 hm5C_associated_SNPs_42642 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 63bp
chr13 28752064 28752064 1 + A T UCEC 28752059 + 28752039 28752079 41 CTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGGTG CTTTGGTGCCCTCAACATCTCTCAGTGACGAAAGGTAGGTG < 41bp 1 0.537163135307791 1 0.186867296695709 experiment 0.925673729384418 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752059 chr13:28752064 stopgain 1.000 1 26 hm5C_associated_SNPs_42642 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 9bp
chr13 28752064 28752064 1 + A T UCEC 28752061 + 28752041 28752081 41 TTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGGTGAA TTGGTGCCCTCAACATCTCTCAGTGACGAAAGGTAGGTGAA < 41bp 1 0.326107102824074 1 0.622917652130127 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752061 chr13:28752064 stopgain 1.000 1 24 hm5C_associated_SNPs_42643 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 63bp
chr13 28752064 28752064 1 + A T UCEC 28752061 + 28752041 28752081 41 TTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGGTGAA TTGGTGCCCTCAACATCTCTCAGTGACGAAAGGTAGGTGAA < 41bp 1 0.326107102824074 1 0.622917652130127 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752061 chr13:28752064 stopgain 1.000 1 24 hm5C_associated_SNPs_42643 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 9bp
chr1 155288063 155288063 1 + T C UCEC 155288044 + 155288024 155288064 41 TGAAGCTCTATTGCCGGGAGCAGCCCTATTACCTGAACCTG TGAAGCTCTATTGCCGGGAGCAGCCCTATTACCTGAACCCG < 41bp 1 0.248578239314483 1 0.304238379001617 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155288044 chr1:155288063 nonsynonymous SNV 0.995 2 40 hm5C_associated_SNPs_42644 0 0 1 0 1 FDPS chr1:155288082 5'GT 155288082 Upstream 20bp
chr17 2266378 2266378 1 + C T UCEC 2266362 + 2266342 2266382 41 CCCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGGG CCCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCTGGGG < 41bp 1 0.123949609612978 1 0.367151170969009 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2266362 chr17:2266378 nonsynonymous SNV 0.975 2 37 hm5C_associated_SNPs_42645 0 0 1 0 2 SGSM2 chr17:2266283 3'AG 2266283 Downstream 96bp
chr17 2266378 2266378 1 + C T UCEC 2266362 + 2266342 2266382 41 CCCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGGG CCCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCTGGGG < 41bp 1 0.123949609612978 1 0.367151170969009 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2266362 chr17:2266378 nonsynonymous SNV 0.975 2 37 hm5C_associated_SNPs_42645 0 0 1 0 2 SGSM2 chr17:2266428 5'GT 2266428 Upstream 51bp
chr17 2266378 2266378 1 + C T UCEC 2266363 + 2266343 2266383 41 CCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGGGT CCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCTGGGGT < 41bp 1 0.452764756443218 1 0.751694858074188 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2266363 chr17:2266378 nonsynonymous SNV 0.975 2 36 hm5C_associated_SNPs_42646 0 0 1 0 2 SGSM2 chr17:2266283 3'AG 2266283 Downstream 96bp
chr17 2266378 2266378 1 + C T UCEC 2266363 + 2266343 2266383 41 CCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGGGT CCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCTGGGGT < 41bp 1 0.452764756443218 1 0.751694858074188 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2266363 chr17:2266378 nonsynonymous SNV 0.975 2 36 hm5C_associated_SNPs_42646 0 0 1 0 2 SGSM2 chr17:2266428 5'GT 2266428 Upstream 51bp
chr5 131607115 131607115 1 + G A UCEC 131607104 + 131607084 131607124 41 GAGCCCGTGGCCGCGGAGCCCAAGCAGTCAGGCTCCTTCCG GAGCCCGTGGCCGCGGAGCCCAAGCAGTCAGACTCCTTCCG < 41bp 1 0.63066572255302 1 0.314585030078888 experiment 0.738668554893959 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131607104 chr5:131607115 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_42647 0 0 1 0 1 PDLIM4 chr5:131607159 5'GT 131607159 Upstream 45bp
chr16 5123003 5123003 1 + G A UCEC 5122983 + 5122963 5123003 41 CATGATGAGCTCTTGCAGAACAACAGAATTCAGATTGTGGG CATGATGAGCTCTTGCAGAACAACAGAATTCAGATTGTGGA < 41bp 1 0.483980563515776 1 0.188659489154816 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5122983 chr16:5123003 nonsynonymous SNV 0.022 0 41 hm5C_associated_SNPs_42648 0 0 1 0 2 ALG1 chr16:5122952 3'AG 5122952 Downstream 52bp
chr16 5123003 5123003 1 + G A UCEC 5122983 + 5122963 5123003 41 CATGATGAGCTCTTGCAGAACAACAGAATTCAGATTGTGGG CATGATGAGCTCTTGCAGAACAACAGAATTCAGATTGTGGA < 41bp 1 0.483980563515776 1 0.188659489154816 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5122983 chr16:5123003 nonsynonymous SNV 0.022 0 41 hm5C_associated_SNPs_42648 0 0 1 0 2 ALG1 chr16:5123029 5'GT 5123029 Upstream 27bp
chr16 5123003 5123003 1 + G A UCEC 5123009 + 5122989 5123029 41 AATTCAGATTGTGGGGTTGACAGAACTTCAGAGTCTTGCAG AATTCAGATTGTGGAGTTGACAGAACTTCAGAGTCTTGCAG < 41bp 1 0.710511142672574 1 0.188962310552597 experiment 0.578977714654853 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5123009 chr16:5123003 nonsynonymous SNV 0.022 0 15 hm5C_associated_SNPs_42649 0 0 1 0 2 ALG1 chr16:5122952 3'AG 5122952 Downstream 52bp
chr16 5123003 5123003 1 + G A UCEC 5123009 + 5122989 5123029 41 AATTCAGATTGTGGGGTTGACAGAACTTCAGAGTCTTGCAG AATTCAGATTGTGGAGTTGACAGAACTTCAGAGTCTTGCAG < 41bp 1 0.710511142672574 1 0.188962310552597 experiment 0.578977714654853 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5123009 chr16:5123003 nonsynonymous SNV 0.022 0 15 hm5C_associated_SNPs_42649 0 0 1 0 2 ALG1 chr16:5123029 5'GT 5123029 Upstream 27bp
chr6 18213962 18213962 1 + A G UCEC 18213957 + 18213937 18213977 41 TGACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAG TGACTTTTTTGGTCACGTTCCTCCCGGTGCCAGCAAGCGAG < 41bp 1 0.522763130392575 1 0.303245306015015 experiment 0.954473739214851 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213957 chr6:18213962 nonsynonymous SNV 0.995 2 26 hm5C_associated_SNPs_42650 0 0 1 0 2 KDM1B chr6:18213887 3'AG 18213887 Downstream 76bp
chr6 18213962 18213962 1 + A G UCEC 18213957 + 18213937 18213977 41 TGACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAG TGACTTTTTTGGTCACGTTCCTCCCGGTGCCAGCAAGCGAG < 41bp 1 0.522763130392575 1 0.303245306015015 experiment 0.954473739214851 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213957 chr6:18213962 nonsynonymous SNV 0.995 2 26 hm5C_associated_SNPs_42650 0 0 1 0 2 KDM1B chr6:18214012 5'GT 18214012 Upstream 51bp
chr6 18213962 18213962 1 + A G UCEC 18213959 + 18213939 18213979 41 ACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAGGG ACTTTTTTGGTCACGTTCCTCCCGGTGCCAGCAAGCGAGGG < 41bp 1 0.720020489111761 1 0.829145014286041 experiment 0.559959021776478 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213959 chr6:18213962 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_42651 0 0 1 0 2 KDM1B chr6:18213887 3'AG 18213887 Downstream 76bp
chr6 18213962 18213962 1 + A G UCEC 18213959 + 18213939 18213979 41 ACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAGGG ACTTTTTTGGTCACGTTCCTCCCGGTGCCAGCAAGCGAGGG < 41bp 1 0.720020489111761 1 0.829145014286041 experiment 0.559959021776478 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213959 chr6:18213962 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_42651 0 0 1 0 2 KDM1B chr6:18214012 5'GT 18214012 Upstream 51bp
chr7 44098981 44098981 1 + G A UCEC 44098968 + 44098948 44098988 41 TGCAGGCAAGCTGAGGAGCCCCTTCCTGCAGAAGCAGCTCA TGCAGGCAAGCTGAGGAGCCCCTTCCTGCAGAAACAGCTCA < 41bp 1 0.0168717739369199 1 0.0306969285011292 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DBNL ENSG00000136279 CDS Human protein_coding chr7:44098968 chr7:44098981 synonymous SNV . 0 34 hm5C_associated_SNPs_42652 0 0 1 0 1 DBNL chr7:44098953 3'AG 44098953 Downstream 29bp
chr6 87865419 87865419 1 + G A UCEC 87865437 + 87865417 87865457 41 GCGGGAGAGCCGGGTACCGGCCGTGGAAGCGGCCACCGACT GCAGGAGAGCCGGGTACCGGCCGTGGAAGCGGCCACCGACT < 41bp 1 0.458489409397047 1 0.23932158946991 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF292 ENSG00000188994 CDS Human protein_coding chr6:87865437 chr6:87865419 nonsynonymous SNV 0.991 0 3 hm5C_associated_SNPs_42653 0 0 1 0 1 ZNF292 chr6:87865477 5'GT 87865477 Upstream 59bp
chr19 971942 971942 1 + C T UCEC 971939 + 971919 971959 41 GCTCCCAACAAAGGAGGCGGCGGCGGCGGCGGCAGCAGCAG GCTCCCAACAAAGGAGGCGGCGGTGGCGGCGGCAGCAGCAG < 41bp 1 0.739800993587442 1 0.679072618484497 experiment 0.520398012825116 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARID3A ENSG00000116017 CDS Human protein_coding chr19:971939 chr19:971942 synonymous SNV . 0 24 hm5C_associated_SNPs_42654 0 0 0 0 1 ARID3A chr19:971878 3'AG 971878 Downstream 65bp
chr21 47983777 47983777 1 + C T UCEC 47983797 + 47983777 47983817 41 CCCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG TCCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG < 41bp 1 0.325740068748677 1 0.256418168544769 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47983797 chr21:47983777 nonsynonymous SNV 0.771 4 1 hm5C_associated_SNPs_42657 0 0 1 0 2 DIP2A chr21:47983771 3'AG 47983771 Downstream 7bp
chr21 47983777 47983777 1 + C T UCEC 47983797 + 47983777 47983817 41 CCCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG TCCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG < 41bp 1 0.325740068748677 1 0.256418168544769 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47983797 chr21:47983777 nonsynonymous SNV 0.771 4 1 hm5C_associated_SNPs_42657 0 0 1 0 2 DIP2A chr21:47983845 5'GT 47983845 Upstream 69bp
chr19 18255950 18255950 1 + A G UCEC 18255949 + 18255929 18255969 41 CGGCCCCCCATCGTTATCCACAGCTCTGGCAAGAAGTACGG CGGCCCCCCATCGTTATCCACGGCTCTGGCAAGAAGTACGG < 41bp 1 0.300997899949644 1 0.051302969455719 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18255949 chr19:18255950 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_42658 0 0 0 0 1 MAST3 chr19:18256039 5'GT 18256039 Upstream 90bp
chr17 4859436 4859436 1 + G A UCEC 4859423 + 4859403 4859443 41 CAACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAG CAACCAGATCGGCTCGGTGACCGAATCGATCCAAGCGTGAG < 41bp 1 0.487808036927284 1 0.282024621963501 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859423 chr17:4859436 synonymous SNV . 0 34 hm5C_associated_SNPs_42659 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 75bp
chr17 4859436 4859436 1 + G A UCEC 4859423 + 4859403 4859443 41 CAACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAG CAACCAGATCGGCTCGGTGACCGAATCGATCCAAGCGTGAG < 41bp 1 0.487808036927284 1 0.282024621963501 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859423 chr17:4859436 synonymous SNV . 0 34 hm5C_associated_SNPs_42659 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 3bp
chr17 4859436 4859436 1 + G A UCEC 4859424 + 4859404 4859444 41 AACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAGT AACCAGATCGGCTCGGTGACCGAATCGATCCAAGCGTGAGT < 41bp 1 0.372831753743664 1 0.63074791431427 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859424 chr17:4859436 synonymous SNV . 0 33 hm5C_associated_SNPs_42660 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 75bp
chr17 4859436 4859436 1 + G A UCEC 4859424 + 4859404 4859444 41 AACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAGT AACCAGATCGGCTCGGTGACCGAATCGATCCAAGCGTGAGT < 41bp 1 0.372831753743664 1 0.63074791431427 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859424 chr17:4859436 synonymous SNV . 0 33 hm5C_associated_SNPs_42660 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 3bp
chr12 110456154 110456154 1 + C A UCEC 110456173 + 110456153 110456193 41 CCTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATC CATTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATC < 41bp 1 0.36173842984916 1 0.348741590976715 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110456173 chr12:110456154 synonymous SNV . 0 2 hm5C_associated_SNPs_42665 0 0 0 0 1 ANKRD13A chr12:110456150 3'AG 110456150 Downstream 5bp
chr12 110456154 110456154 1 + C A UCEC 110456174 + 110456154 110456194 41 CTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATCT ATTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATCT < 41bp 1 0.357751411506177 1 0.2260522544384 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110456174 chr12:110456154 synonymous SNV . 0 1 hm5C_associated_SNPs_42666 0 0 0 0 1 ANKRD13A chr12:110456150 3'AG 110456150 Downstream 5bp
chr16 30998265 30998265 1 + G A UCEC 30998260 + 30998240 30998280 41 ACTTCTACCGCCAGGGCCTGCGCCTGGGAGGTTGGCTCTTC ACTTCTACCGCCAGGGCCTGCGCCTAGGAGGTTGGCTCTTC < 41bp 1 0.58684584166219 1 0.258030742406845 experiment 0.82630831667562 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSD3B7 ENSG00000099377 CDS Human protein_coding chr16:30998260 chr16:30998265 synonymous SNV . 0 26 hm5C_associated_SNPs_42668 0 0 0 0 1 HSD3B7 chr16:30998323 5'GT 30998323 Upstream 59bp
chr15 57526293 57526293 1 + G T UCEC 57526295 + 57526275 57526315 41 AGGTGATGCACTTGGAAAGGCTTTGGCATCTGTGAGTATTG AGGTGATGCACTTGGAAATGCTTTGGCATCTGTGAGTATTG < 41bp 1 0.140352521885832 1 0.026357889175415 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57526295 chr15:57526293 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_42672 0 0 1 0 2 TCF12 chr15:57526241 3'AG 57526241 Downstream 53bp
chr15 57526293 57526293 1 + G T UCEC 57526295 + 57526275 57526315 41 AGGTGATGCACTTGGAAAGGCTTTGGCATCTGTGAGTATTG AGGTGATGCACTTGGAAATGCTTTGGCATCTGTGAGTATTG < 41bp 1 0.140352521885832 1 0.026357889175415 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57526295 chr15:57526293 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_42672 0 0 1 0 2 TCF12 chr15:57526305 5'GT 57526305 Upstream 13bp
chr8 145735854 145735854 1 + G A UCEC 145735855 + 145735835 145735875 41 GTGGTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTT GTGGTCTGCTCCATCGCTGACTCCTCCCTGGGTGGGACCTT < 41bp 1 0.280996852039125 1 0.201964527368546 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735855 chr8:145735854 nonsynonymous SNV 0.584 5 20 hm5C_associated_SNPs_42673 0 0 1 0 1 MFSD3 chr8:145735890 5'GT 145735890 Upstream 37bp
chr8 145735854 145735854 1 + G A UCEC 145735858 + 145735838 145735878 41 GTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTTGCT GTCTGCTCCATCGCTGACTCCTCCCTGGGTGGGACCTTGCT < 41bp 1 0.223769005511357 1 0.285923540592194 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735858 chr8:145735854 nonsynonymous SNV 0.584 5 17 hm5C_associated_SNPs_42674 0 0 1 0 1 MFSD3 chr8:145735890 5'GT 145735890 Upstream 37bp
chr8 145150812 145150812 1 + C T UCEC 145150830 + 145150810 145150850 41 GGCAGGGGGTGCGGGGCTGGCCATGGCTCTGCATTCGGCTG GGTAGGGGGTGCGGGGCTGGCCATGGCTCTGCATTCGGCTG < 41bp 1 0.569554340769518 1 0.468362718820572 experiment 0.860891318460963 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145150830 chr8:145150812 nonsynonymous SNV 0.983 1 3 hm5C_associated_SNPs_42675 0 0 1 0 1 CYC1 chr8:145150736 3'AG 145150736 Downstream 77bp
chr7 106768717 106768717 1 + C T UCEC 106768707 + 106768687 106768727 41 AATAGGTTGCAAGAGGCTTGCAAAGACATCCTGCTGTTTAA AATAGGTTGCAAGAGGCTTGCAAAGACATCTTGCTGTTTAA < 41bp 1 0.441552884877782 1 0.529642581939697 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106768707 chr7:106768717 synonymous SNV . 0 31 hm5C_associated_SNPs_42676 0 0 1 0 2 PRKAR2B chr7:106768657 3'AG 106768657 Downstream 61bp
chr7 106768717 106768717 1 + C T UCEC 106768707 + 106768687 106768727 41 AATAGGTTGCAAGAGGCTTGCAAAGACATCCTGCTGTTTAA AATAGGTTGCAAGAGGCTTGCAAAGACATCTTGCTGTTTAA < 41bp 1 0.441552884877782 1 0.529642581939697 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106768707 chr7:106768717 synonymous SNV . 0 31 hm5C_associated_SNPs_42676 0 0 1 0 2 PRKAR2B chr7:106768740 5'GT 106768740 Upstream 24bp
chr1 223943216 223943216 1 + G T UCEC 223943200 + 223943180 223943220 41 AGACACATTCTGGATGAACCCTCAGTACCTGATCAAGCTGG AGACACATTCTGGATGAACCCTCAGTACCTGATCAATCTGG < 41bp 1 0.624191786778362 1 0.417696118354797 experiment 0.751616426443276 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943200 chr1:223943216 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_42677 0 0 1 0 1 CAPN2 chr1:223943182 3'AG 223943182 Downstream 35bp
chr1 223943216 223943216 1 + G T UCEC 223943207 + 223943187 223943227 41 TTCTGGATGAACCCTCAGTACCTGATCAAGCTGGAGGAGGA TTCTGGATGAACCCTCAGTACCTGATCAATCTGGAGGAGGA < 41bp 1 0.363602501205921 1 0.0291604697704315 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943207 chr1:223943216 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_42678 0 0 1 0 1 CAPN2 chr1:223943182 3'AG 223943182 Downstream 35bp
chr5 71648504 71648504 1 + C T UCEC 71648516 + 71648496 71648536 41 TGGAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA TGGAAAACTTGATAAAGACTCTAAAAAATGCTGCAGAAGGA < 41bp 1 0.453778085251046 1 0.641235888004303 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71648516 chr5:71648504 synonymous SNV . 0 9 hm5C_associated_SNPs_42679 0 0 1 0 2 PTCD2 chr5:71648468 3'AG 71648468 Downstream 37bp
chr5 71648504 71648504 1 + C T UCEC 71648516 + 71648496 71648536 41 TGGAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA TGGAAAACTTGATAAAGACTCTAAAAAATGCTGCAGAAGGA < 41bp 1 0.453778085251046 1 0.641235888004303 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71648516 chr5:71648504 synonymous SNV . 0 9 hm5C_associated_SNPs_42679 0 0 1 0 2 PTCD2 chr5:71648581 5'GT 71648581 Upstream 78bp
chr1 10239573 10239573 1 + C T UCEC 10239562 + 10239542 10239582 41 ATCATCCTGCGGCACCTGCTCAACTCCCCCACGGACCCCTT ATCATCCTGCGGCACCTGCTCAACTCCCCCATGGACCCCTT < 41bp 1 0.486782551616694 1 0.634780168533325 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10239562 chr1:10239573 nonsynonymous SNV 0.995 4 32 hm5C_associated_SNPs_42680 0 0 1 0 2 UBE4B chr1:10239474 3'AG 10239474 Downstream 100bp
chr1 10239573 10239573 1 + C T UCEC 10239562 + 10239542 10239582 41 ATCATCCTGCGGCACCTGCTCAACTCCCCCACGGACCCCTT ATCATCCTGCGGCACCTGCTCAACTCCCCCATGGACCCCTT < 41bp 1 0.486782551616694 1 0.634780168533325 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10239562 chr1:10239573 nonsynonymous SNV 0.995 4 32 hm5C_associated_SNPs_42680 0 0 1 0 2 UBE4B chr1:10239620 5'GT 10239620 Upstream 48bp
chr11 93412659 93412659 1 + C T UCEC 93412674 + 93412654 93412694 41 TGGAACGGTTTGAAAAGGCACATGTACGGGGATTCCAAGCA TGGAATGGTTTGAAAAGGCACATGTACGGGGATTCCAAGCA < 41bp 1 0.202584432392026 1 0.0708856880664825 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEP295 ENSG00000166004 CDS Human protein_coding chr11:93412674 chr11:93412659 nonsynonymous SNV 0.983 2 6 hm5C_associated_SNPs_42683 0 0 1 0 2 CEP295 chr11:93412578 3'AG 93412578 Downstream 82bp
chr11 93412659 93412659 1 + C T UCEC 93412674 + 93412654 93412694 41 TGGAACGGTTTGAAAAGGCACATGTACGGGGATTCCAAGCA TGGAATGGTTTGAAAAGGCACATGTACGGGGATTCCAAGCA < 41bp 1 0.202584432392026 1 0.0708856880664825 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEP295 ENSG00000166004 CDS Human protein_coding chr11:93412674 chr11:93412659 nonsynonymous SNV 0.983 2 6 hm5C_associated_SNPs_42683 0 0 1 0 2 CEP295 chr11:93412718 5'GT 93412718 Upstream 60bp
chr19 54649743 54649743 1 + C T UCEC 54649752 + 54649732 54649772 41 ACCACCTCCAGCTCTCCCATCCCGCCCAGCCCAGCCAACTG ACCACCTCCAGTTCTCCCATCCCGCCCAGCCCAGCCAACTG < 41bp 1 0.192379898782454 1 0.414322346448898 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54649752 chr19:54649743 synonymous SNV . 0 12 hm5C_associated_SNPs_42684 0 0 1 1 2 CNOT3 chr19:54649646 3'AG 54649646 Downstream 98bp
chr19 54649743 54649743 1 + C T UCEC 54649752 + 54649732 54649772 41 ACCACCTCCAGCTCTCCCATCCCGCCCAGCCCAGCCAACTG ACCACCTCCAGTTCTCCCATCCCGCCCAGCCCAGCCAACTG < 41bp 1 0.192379898782454 1 0.414322346448898 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54649752 chr19:54649743 synonymous SNV . 0 12 hm5C_associated_SNPs_42684 0 0 1 1 2 CNOT3 chr19:54649779 5'GT 54649779 Upstream 37bp
chr6 32944236 32944236 1 + G A UCEC 32944227 + 32944207 32944247 41 TTACTGCAGCTCCTCCAGCCCAGCCCCTTGCCAAGGTATGA TTACTGCAGCTCCTCCAGCCCAGCCCCTTACCAAGGTATGA < 41bp 1 0.297550665119566 1 0.152070939540863 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32944227 chr6:32944236 nonsynonymous SNV 1.000 0 30 hm5C_associated_SNPs_42687 0 0 1 0 1 BRD2 chr6:32944241 5'GT 32944241 Upstream 6bp
chr12 70704743 70704743 1 + C T UCEC 70704725 + 70704705 70704745 41 AAGAAGTTTGTAGAGGGGGTCGACAGTGACTACCATGACGA AAGAAGTTTGTAGAGGGGGTCGACAGTGACTACCATGATGA < 41bp 1 0.701786812933145 1 0.425056368112564 experiment 0.596426374133709 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT2 ENSG00000111596 CDS Human protein_coding chr12:70704725 chr12:70704743 synonymous SNV . 0 39 hm5C_associated_SNPs_42688 0 0 1 0 2 CNOT2 chr12:70704675 3'AG 70704675 Downstream 69bp
chr12 70704743 70704743 1 + C T UCEC 70704725 + 70704705 70704745 41 AAGAAGTTTGTAGAGGGGGTCGACAGTGACTACCATGACGA AAGAAGTTTGTAGAGGGGGTCGACAGTGACTACCATGATGA < 41bp 1 0.701786812933145 1 0.425056368112564 experiment 0.596426374133709 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT2 ENSG00000111596 CDS Human protein_coding chr12:70704725 chr12:70704743 synonymous SNV . 0 39 hm5C_associated_SNPs_42688 0 0 1 0 2 CNOT2 chr12:70704797 5'GT 70704797 Upstream 55bp
chr2 242688333 242688333 1 + C T UCEC 242688316 + 242688296 242688336 41 CGCCTGTGGTCCTGGGAGCCCGAGGCCAGCCCGGCTGCCGC CGCCTGTGGTCCTGGGAGCCCGAGGCCAGCCCGGCTGTCGC < 41bp 1 0.756933606939965 1 0.908868730068207 experiment 0.486132786120071 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242688316 chr2:242688333 nonsynonymous SNV . 0 38 hm5C_associated_SNPs_42689 0 0 0 0 3 D2HGDH chr2:242688280 3'AG 242688280 Downstream 54bp
chr2 242688333 242688333 1 + C T UCEC 242688316 + 242688296 242688336 41 CGCCTGTGGTCCTGGGAGCCCGAGGCCAGCCCGGCTGCCGC CGCCTGTGGTCCTGGGAGCCCGAGGCCAGCCCGGCTGTCGC < 41bp 1 0.756933606939965 1 0.908868730068207 experiment 0.486132786120071 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242688316 chr2:242688333 nonsynonymous SNV . 0 38 hm5C_associated_SNPs_42689 0 0 0 0 3 D2HGDH chr2:242688357 5'GT 242688357 Upstream 25bp
chr2 242688333 242688333 1 + C T UCEC 242688316 + 242688296 242688336 41 CGCCTGTGGTCCTGGGAGCCCGAGGCCAGCCCGGCTGCCGC CGCCTGTGGTCCTGGGAGCCCGAGGCCAGCCCGGCTGTCGC < 41bp 1 0.756933606939965 1 0.908868730068207 experiment 0.486132786120071 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242688316 chr2:242688333 nonsynonymous SNV . 0 38 hm5C_associated_SNPs_42689 0 0 0 0 3 D2HGDH chr2:242688423 5'GT 242688423 Upstream 91bp
chr6 44219189 44219189 1 + G A UCEC 44219187 + 44219167 44219207 41 GTGTGGTTGACTCTGAGGATCTGCCCCTGAACATCTCCCGA GTGTGGTTGACTCTGAGGATCTACCCCTGAACATCTCCCGA < 41bp 1 0.254944090178983 1 0.0876008570194244 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219187 chr6:44219189 synonymous SNV . 0 23 hm5C_associated_SNPs_42694 0 0 1 0 1 HSP90AB1 chr6:44219155 3'AG 44219155 Downstream 35bp
chr11 93412692 93412692 1 + G A UCEC 93412674 + 93412654 93412694 41 TGGAACGGTTTGAAAAGGCACATGTACGGGGATTCCAAGCA TGGAACGGTTTGAAAAGGCACATGTACGGGGATTCCAAACA < 41bp 1 0.181918148362586 1 0.0500983893871307 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEP295 ENSG00000166004 CDS Human protein_coding chr11:93412674 chr11:93412692 nonsynonymous SNV 0.994 4 39 hm5C_associated_SNPs_42696 0 0 1 0 1 CEP295 chr11:93412718 5'GT 93412718 Upstream 27bp
chr19 48259045 48259045 1 + G A UCEC 48259063 + 48259043 48259083 41 GAGCTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGGTGC GAACTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGGTGC < 41bp 1 0.243579163925808 1 0.0310888588428497 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259063 chr19:48259045 nonsynonymous SNV 0.905 4 3 hm5C_associated_SNPs_42697 0 0 1 0 2 NOP53 chr19:48259013 3'AG 48259013 Downstream 33bp
chr19 48259045 48259045 1 + G A UCEC 48259063 + 48259043 48259083 41 GAGCTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGGTGC GAACTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGGTGC < 41bp 1 0.243579163925808 1 0.0310888588428497 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259063 chr19:48259045 nonsynonymous SNV 0.905 4 3 hm5C_associated_SNPs_42697 0 0 1 0 2 NOP53 chr19:48259079 5'GT 48259079 Upstream 35bp
chr11 65156920 65156920 1 + C A UCEC 65156938 + 65156918 65156958 41 CACCGCGCTGTCCGCGAGGTCCTGCAGCTTCCAGACATCGC CAACGCGCTGTCCGCGAGGTCCTGCAGCTTCCAGACATCGC < 41bp 1 0.0678741992937523 1 0.115534752607346 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65156938 chr11:65156920 nonsynonymous SNV 0.992 4 3 hm5C_associated_SNPs_42698 0 0 0 0 2 FRMD8 chr11:65156832 3'AG 65156832 Downstream 89bp
chr11 65156920 65156920 1 + C A UCEC 65156938 + 65156918 65156958 41 CACCGCGCTGTCCGCGAGGTCCTGCAGCTTCCAGACATCGC CAACGCGCTGTCCGCGAGGTCCTGCAGCTTCCAGACATCGC < 41bp 1 0.0678741992937523 1 0.115534752607346 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65156938 chr11:65156920 nonsynonymous SNV 0.992 4 3 hm5C_associated_SNPs_42698 0 0 0 0 2 FRMD8 chr11:65156999 5'GT 65156999 Upstream 80bp
chr12 65264471 65264471 1 + G A UCEC 65264472 + 65264452 65264492 41 TCGAAGTGAATACCATGCAGCTTTTAACAGTATGATGATGG TCGAAGTGAATACCATGCAACTTTTAACAGTATGATGATGG < 41bp 1 0.0194755405094453 1 0.0230828821659088 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBC1D30 ENSG00000111490 CDS Human protein_coding chr12:65264472 chr12:65264471 nonsynonymous SNV 0.542 2 20 hm5C_associated_SNPs_42703 0 0 0 0 1 TBC1D30 chr12:65264382 3'AG 65264382 Downstream 90bp
chr12 112130543 112130543 1 + C A UCEC 112130547 + 112130527 112130567 41 GCTGTTTCCAGTCCCCCCGTCTCCAGTGGGTGTGGAGAACA GCTGTTTCCAGTCCCCACGTCTCCAGTGGGTGTGGAGAACA < 41bp 1 0.793531928891545 1 0.96718442440033 experiment 0.41293614221691 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ACAD10 ENSG00000111271 CDS Human protein_coding chr12:112130547 chr12:112130543 synonymous SNV . 0 17 hm5C_associated_SNPs_42704 0 0 0 0 1 ACAD10 chr12:112130501 3'AG 112130501 Downstream 43bp
chr19 18543843 18543843 1 + G A UCEC 18543840 + 18543820 18543860 41 GAACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTG GAACCCCATCGGGCAGGGCGCCGACAGGGCTAATGTGAGTG < 41bp 1 0.0646960333534908 1 0.113160818815231 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543840 chr19:18543843 nonsynonymous SNV 0.760 0 24 hm5C_associated_SNPs_42705 0 0 1 0 2 SSBP4 chr19:18543783 3'AG 18543783 Downstream 61bp
chr19 18543843 18543843 1 + G A UCEC 18543840 + 18543820 18543860 41 GAACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTG GAACCCCATCGGGCAGGGCGCCGACAGGGCTAATGTGAGTG < 41bp 1 0.0646960333534908 1 0.113160818815231 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543840 chr19:18543843 nonsynonymous SNV 0.760 0 24 hm5C_associated_SNPs_42705 0 0 1 0 2 SSBP4 chr19:18543853 5'GT 18543853 Upstream 11bp
chr19 18543843 18543843 1 + G A UCEC 18543841 + 18543821 18543861 41 AACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTGG AACCCCATCGGGCAGGGCGCCGACAGGGCTAATGTGAGTGG < 41bp 1 0.542660118254472 1 0.4344202876091 experiment 0.914679763491056 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543841 chr19:18543843 nonsynonymous SNV 0.760 0 23 hm5C_associated_SNPs_42706 0 0 1 0 2 SSBP4 chr19:18543783 3'AG 18543783 Downstream 61bp
chr19 18543843 18543843 1 + G A UCEC 18543841 + 18543821 18543861 41 AACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTGG AACCCCATCGGGCAGGGCGCCGACAGGGCTAATGTGAGTGG < 41bp 1 0.542660118254472 1 0.4344202876091 experiment 0.914679763491056 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543841 chr19:18543843 nonsynonymous SNV 0.760 0 23 hm5C_associated_SNPs_42706 0 0 1 0 2 SSBP4 chr19:18543853 5'GT 18543853 Upstream 11bp
chr7 98497059 98497059 1 + G A UCEC 98497067 + 98497047 98497087 41 TTCCATCATTCCGAGGGGATCACTTTCTCTGAAAGTGTTGG TTCCATCATTCCAAGGGGATCACTTTCTCTGAAAGTGTTGG < 41bp 1 0.0239924846430289 1 0.121159315109253 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98497067 chr7:98497059 synonymous SNV . 0 13 hm5C_associated_SNPs_42707 0 0 1 0 2 TRRAP chr7:98497045 3'AG 98497045 Downstream 15bp
chr7 98497059 98497059 1 + G A UCEC 98497067 + 98497047 98497087 41 TTCCATCATTCCGAGGGGATCACTTTCTCTGAAAGTGTTGG TTCCATCATTCCAAGGGGATCACTTTCTCTGAAAGTGTTGG < 41bp 1 0.0239924846430289 1 0.121159315109253 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98497067 chr7:98497059 synonymous SNV . 0 13 hm5C_associated_SNPs_42707 0 0 1 0 2 TRRAP chr7:98497122 5'GT 98497122 Upstream 64bp
chr1 114514526 114514526 1 + C T UCEC 114514546 + 114514526 114514566 41 CGAGCTCAACGCGGGGGGACCAGTGCAGCACAACCACTCAA TGAGCTCAACGCGGGGGGACCAGTGCAGCACAACCACTCAA < 41bp 1 0.564483461276261 1 0.669021368026733 experiment 0.871033077447479 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114514546 chr1:114514526 stopgain 0.920 1 1 hm5C_associated_SNPs_42708 0 0 1 0 2 HIPK1 chr1:114514446 3'AG 114514446 Downstream 81bp
chr1 114514526 114514526 1 + C T UCEC 114514546 + 114514526 114514566 41 CGAGCTCAACGCGGGGGGACCAGTGCAGCACAACCACTCAA TGAGCTCAACGCGGGGGGACCAGTGCAGCACAACCACTCAA < 41bp 1 0.564483461276261 1 0.669021368026733 experiment 0.871033077447479 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114514546 chr1:114514526 stopgain 0.920 1 1 hm5C_associated_SNPs_42708 0 0 1 0 2 HIPK1 chr1:114514576 5'GT 114514576 Upstream 51bp
chr3 62189595 62189595 1 + A G UCEC 62189585 + 62189565 62189605 41 AGCCTATGTCCCGCGGGGACCGATTTTCTGAAGACAGCAGA AGCCTATGTCCCGCGGGGACCGATTTTCTGGAGACAGCAGA < 41bp 1 0.0993635705414233 1 0.0875984728336334 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:62189585 chr3:62189595 nonsynonymous SNV 0.996 1 31 hm5C_associated_SNPs_42709 0 0 0 0 1 PTPRG chr3:62189624 5'GT 62189624 Upstream 30bp
chr18 55996262 55996262 1 + A G UCEC 55996248 + 55996228 55996268 41 GACGTGTCCTCGGAGTCGGACAATAACATCAGACAGATCAA GACGTGTCCTCGGAGTCGGACAATAACATCAGACGGATCAA < 41bp 1 0.312304421160516 1 0.222743958234787 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NEDD4L ENSG00000049759 CDS Human protein_coding chr18:55996248 chr18:55996262 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_42711 0 0 1 0 2 NEDD4L chr18:55996227 3'AG 55996227 Downstream 36bp
chr18 55996262 55996262 1 + A G UCEC 55996248 + 55996228 55996268 41 GACGTGTCCTCGGAGTCGGACAATAACATCAGACAGATCAA GACGTGTCCTCGGAGTCGGACAATAACATCAGACGGATCAA < 41bp 1 0.312304421160516 1 0.222743958234787 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NEDD4L ENSG00000049759 CDS Human protein_coding chr18:55996248 chr18:55996262 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_42711 0 0 1 0 2 NEDD4L chr18:55996359 5'GT 55996359 Upstream 98bp
chr6 31525821 31525821 1 + G A UCEC 31525833 + 31525813 31525853 41 GAAACCCAGGAACCTGAGTCCTTCTCAGCCTGGTCAGATCG GAAACCCAAGAACCTGAGTCCTTCTCAGCCTGGTCAGATCG < 41bp 1 0.217517893726319 1 0.110365301370621 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NFKBIL1 ENSG00000204498 CDS Human protein_coding chr6:31525833 chr6:31525821 synonymous SNV . 0 9 hm5C_associated_SNPs_42712 0 0 0 1 1 NFKBIL1 chr6:31525799 3'AG 31525799 Downstream 23bp
chr7 102109433 102109433 1 + C T UCEC 102109445 + 102109425 102109465 41 GGCTTCTGCTGCGGGGTCATCCGAGCCCACAAGAAGGCCAT GGCTTCTGTTGCGGGGTCATCCGAGCCCACAAGAAGGCCAT < 41bp 1 0.414610373426263 1 0.74229884147644 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102109445 chr7:102109433 synonymous SNV . 0 9 hm5C_associated_SNPs_42713 0 0 1 0 1 LRWD1 chr7:102109509 5'GT 102109509 Upstream 77bp
chr22 39125550 39125550 1 + G A UCEC 39125541 + 39125521 39125561 41 ATGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGA ATGCAGTCGACGAAAAAGGGCCCCCTGACAAAACGAGACGA < 41bp 1 0.0480708937720875 1 0.144877433776855 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125541 chr22:39125550 synonymous SNV . 0 30 hm5C_associated_SNPs_42714 0 0 0 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 84bp
chr22 39125550 39125550 1 + G A UCEC 39125542 + 39125522 39125562 41 TGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAG TGCAGTCGACGAAAAAGGGCCCCCTGACAAAACGAGACGAG < 41bp 1 0.0523657959470683 1 0.254397422075272 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125542 chr22:39125550 synonymous SNV . 0 29 hm5C_associated_SNPs_42715 0 0 0 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 84bp
chr22 39125550 39125550 1 + G A UCEC 39125543 + 39125523 39125563 41 GCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGG GCAGTCGACGAAAAAGGGCCCCCTGACAAAACGAGACGAGG < 41bp 1 0.0238458271963889 1 0.194403052330017 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125543 chr22:39125550 synonymous SNV . 0 28 hm5C_associated_SNPs_42716 0 0 0 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 84bp
chr22 39125550 39125550 1 + G A UCEC 39125544 + 39125524 39125564 41 CAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGG CAGTCGACGAAAAAGGGCCCCCTGACAAAACGAGACGAGGG < 41bp 1 0.0850710215543296 1 0.193061172962189 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125544 chr22:39125550 synonymous SNV . 0 27 hm5C_associated_SNPs_42717 0 0 0 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 84bp
chr22 39125550 39125550 1 + G A UCEC 39125545 + 39125525 39125565 41 AGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGGG AGTCGACGAAAAAGGGCCCCCTGACAAAACGAGACGAGGGG < 41bp 1 0.122268157071606 1 0.366479635238647 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125545 chr22:39125550 synonymous SNV . 0 26 hm5C_associated_SNPs_42718 0 0 0 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 84bp
chr22 39125550 39125550 1 + G A UCEC 39125568 + 39125548 39125588 41 ACGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGT ACAAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGT < 41bp 1 0.135694392468229 1 0.183102965354919 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125568 chr22:39125550 synonymous SNV . 0 3 hm5C_associated_SNPs_42719 0 0 0 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 84bp
chr22 39125550 39125550 1 + G A UCEC 39125569 + 39125549 39125589 41 CGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTA CAAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTA < 41bp 1 0.0359151971388896 1 0.437037110328674 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125569 chr22:39125550 synonymous SNV . 0 2 hm5C_associated_SNPs_42720 0 0 0 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 84bp
chr22 39125550 39125550 1 + G A UCEC 39125570 + 39125550 39125590 41 GAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTAG AAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTAG < 41bp 1 0.156044415253989 1 0.320160508155823 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125570 chr22:39125550 synonymous SNV . 0 1 hm5C_associated_SNPs_42721 0 0 0 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 84bp
chr2 38908574 38908574 1 + T C UCEC 38908580 + 38908560 38908600 41 AGAGCACAAGCCAGTCAGGCCACACCAGTCAACCTGACCAA AGAGCACAAGCCAGCCAGGCCACACCAGTCAACCTGACCAA < 41bp 1 0.256277042715408 1 0.205931067466736 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GALM ENSG00000143891 CDS Human protein_coding chr2:38908580 chr2:38908574 synonymous SNV . 0 15 hm5C_associated_SNPs_42722 0 0 1 0 1 GALM chr2:38908628 5'GT 38908628 Upstream 55bp
chr18 77802139 77802139 1 + C A UCEC 77802159 + 77802139 77802179 41 CTTTTGATGTCCCAGCAGACCCTGAGGAATGTGCCACCGAT ATTTTGATGTCCCAGCAGACCCTGAGGAATGTGCCACCGAT < 41bp 1 0.534809326457109 1 0.181409507989883 experiment 0.930381347085782 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBFA ENSG00000101546 CDS Human protein_coding chr18:77802159 chr18:77802139 nonsynonymous SNV 0.957 0 1 hm5C_associated_SNPs_42724 0 0 1 0 2 RBFA chr18:77802135 3'AG 77802135 Downstream 5bp
chr18 77802139 77802139 1 + C A UCEC 77802159 + 77802139 77802179 41 CTTTTGATGTCCCAGCAGACCCTGAGGAATGTGCCACCGAT ATTTTGATGTCCCAGCAGACCCTGAGGAATGTGCCACCGAT < 41bp 1 0.534809326457109 1 0.181409507989883 experiment 0.930381347085782 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBFA ENSG00000101546 CDS Human protein_coding chr18:77802159 chr18:77802139 nonsynonymous SNV 0.957 0 1 hm5C_associated_SNPs_42724 0 0 1 0 2 RBFA chr18:77802219 5'GT 77802219 Upstream 81bp
chr17 37360389 37360389 1 + T C UCEC 37360369 + 37360349 37360389 41 AAGGTGAAGGGGAATGTGTTCAAAAACAAGCGGATTCTCAT AAGGTGAAGGGGAATGTGTTCAAAAACAAGCGGATTCTCAC < 41bp 1 0.68788862015468 1 0.679356098175049 experiment 0.624222759690639 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360369 chr17:37360389 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_42726 0 0 1 0 2 RPL19 chr17:37360330 3'AG 37360330 Downstream 60bp
chr17 37360389 37360389 1 + T C UCEC 37360369 + 37360349 37360389 41 AAGGTGAAGGGGAATGTGTTCAAAAACAAGCGGATTCTCAT AAGGTGAAGGGGAATGTGTTCAAAAACAAGCGGATTCTCAC < 41bp 1 0.68788862015468 1 0.679356098175049 experiment 0.624222759690639 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360369 chr17:37360389 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_42726 0 0 1 0 2 RPL19 chr17:37360440 5'GT 37360440 Upstream 52bp
chr17 45656843 45656843 1 + G T UCEC 45656840 + 45656820 45656860 41 AAGTAAATATACTACCCCTTCTGGAGAGGTGCGCTATGCTG AAGTAAATATACTACCCCTTCTGTAGAGGTGCGCTATGCTG < 41bp 1 0.556929844043945 1 0.444603621959686 experiment 0.886140311912111 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45656840 chr17:45656843 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_42727 0 0 1 0 2 NPEPPS chr17:45656756 3'AG 45656756 Downstream 88bp
chr17 45656843 45656843 1 + G T UCEC 45656840 + 45656820 45656860 41 AAGTAAATATACTACCCCTTCTGGAGAGGTGCGCTATGCTG AAGTAAATATACTACCCCTTCTGTAGAGGTGCGCTATGCTG < 41bp 1 0.556929844043945 1 0.444603621959686 experiment 0.886140311912111 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45656840 chr17:45656843 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_42727 0 0 1 0 2 NPEPPS chr17:45656877 5'GT 45656877 Upstream 35bp
chr11 64128969 64128969 1 + C T UCEC 64128952 + 64128932 64128972 41 CCCTCCCAGAAAGAGCGGACCTTCTCCTTCTGTGGCACCAT CCCTCCCAGAAAGAGCGGACCTTCTCCTTCTGTGGCATCAT < 41bp 1 0.0413329899989519 1 0.0518414974212646 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64128952 chr11:64128969 nonsynonymous SNV 0.996 4 38 hm5C_associated_SNPs_42729 0 0 1 0 2 RPS6KA4 chr11:64128941 3'AG 64128941 Downstream 29bp
chr11 64128969 64128969 1 + C T UCEC 64128952 + 64128932 64128972 41 CCCTCCCAGAAAGAGCGGACCTTCTCCTTCTGTGGCACCAT CCCTCCCAGAAAGAGCGGACCTTCTCCTTCTGTGGCATCAT < 41bp 1 0.0413329899989519 1 0.0518414974212646 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64128952 chr11:64128969 nonsynonymous SNV 0.996 4 38 hm5C_associated_SNPs_42729 0 0 1 0 2 RPS6KA4 chr11:64129021 5'GT 64129021 Upstream 53bp
chr1 2421302 2421302 1 + G T UCEC 2421285 + 2421265 2421305 41 GCTGATGAGATTGACGATGACTGCAAGCTCCTCAATGGGGA GCTGATGAGATTGACGATGACTGCAAGCTCCTCAATGTGGA < 41bp 1 0.732050804819872 1 0.130377501249313 experiment 0.535898390360255 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2421285 chr1:2421302 nonsynonymous SNV 0.974 3 38 hm5C_associated_SNPs_42731 0 0 0 0 1 PLCH2 chr1:2421306 5'GT 2421306 Upstream 5bp
chr7 12269412 12269412 1 + C T UCEC 12269401 + 12269381 12269421 41 AAACAGTTATTGGAAAGGCACGCTTAAACAACATAACCATT AAACAGTTATTGGAAAGGCACGCTTAAACAATATAACCATT < 41bp 1 0.230575748458995 1 0.0583687126636505 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM106B ENSG00000106460 CDS Human protein_coding chr7:12269401 chr7:12269412 synonymous SNV . 0 32 hm5C_associated_SNPs_42732 0 0 1 0 1 TMEM106B chr7:12269445 5'GT 12269445 Upstream 34bp
chrX 48457774 48457774 1 + C T UCEC 48457763 + 48457743 48457783 41 CTTTGAGGATGATCCTCGGGCCCTGGGGGCCCGTGGGCACC CTTTGAGGATGATCCTCGGGCCCTGGGGGCCTGTGGGCACC < 41bp 1 0.183999760216503 1 0.0892339944839478 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457763 chrX:48457774 nonsynonymous SNV 0.997 2 32 hm5C_associated_SNPs_42734 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 77bp
chrX 48457774 48457774 1 + C T UCEC 48457772 + 48457752 48457792 41 TGATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTG TGATCCTCGGGCCCTGGGGGCCTGTGGGCACCGTCGTTCTG < 41bp 1 0.136239091187303 1 0.053396999835968 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457772 chrX:48457774 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_42735 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 77bp
chrX 48457774 48457774 1 + C T UCEC 48457773 + 48457753 48457793 41 GATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGT GATCCTCGGGCCCTGGGGGCCTGTGGGCACCGTCGTTCTGT < 41bp 1 0.54012690473272 1 0.385330080986023 experiment 0.919746190534561 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457773 chrX:48457774 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_42736 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 77bp
chr1 228470956 228470956 1 + C T UCEC 228470936 + 228470916 228470956 41 CTCAAGGACGCGGGCGAGTACACGTGTGAGGTGGAGGCTTC CTCAAGGACGCGGGCGAGTACACGTGTGAGGTGGAGGCTTT < 41bp 1 0.191291060607962 1 0.369783937931061 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228470936 chr1:228470956 nonsynonymous SNV 0.022 2 41 hm5C_associated_SNPs_42737 0 0 0 0 1 OBSCN chr1:228470985 5'GT 228470985 Upstream 30bp
chr14 24779943 24779943 1 + G A UCEC 24779945 + 24779925 24779965 41 TCGCGGGCCACAGGCACAGCCTTCCTGCTGCTGGCGGCGCT TCGCGGGCCACAGGCACAACCTTCCTGCTGCTGGCGGCGCT < 41bp 1 0.238517310686816 1 0.44155615568161 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LTB4R2 ENSG00000213906;ENSG00000272658 CDS Human other chr14:24779945 chr14:24779943 nonsynonymous SNV 0.511 0 19 hm5C_associated_SNPs_42738 0 0 1 0 1 CIDEB;LTB4R2 chr14:24779861 3'AG 24779861 Downstream 83bp
chrX 148628333 148628333 1 + C T UCEC 148628325 + 148628305 148628345 41 ACTTTGCAATGCCCCGAAGACTTAACTCCCGATGAGGTTGT ACTTTGCAATGCCCCGAAGACTTAACTCTCGATGAGGTTGT < 41bp 1 0.372600671568204 1 0.0826967358589172 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CXorf40A ENSG00000197620 CDS Human protein_coding chrX:148628325 chrX:148628333 nonsynonymous SNV 0.000 0 29 hm5C_associated_SNPs_42741 0 0 0 0 1 CXorf40A chrX:148628285 3'AG 148628285 Downstream 49bp
chr8 92090667 92090667 1 + G T UCEC 92090658 + 92090638 92090678 41 ATTGAAAACTTAACAGGAGCCAGACATATGGAAAGTGAGAA ATTGAAAACTTAACAGGAGCCAGACATATTGAAAGTGAGAA < 41bp 1 0.451240989924349 1 0.29829066991806 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OTUD6B ENSG00000155100 CDS Human protein_coding chr8:92090658 chr8:92090667 nonsynonymous SNV 0.771 0 30 hm5C_associated_SNPs_42744 0 0 1 0 1 OTUD6B chr8:92090584 3'AG 92090584 Downstream 84bp
chr9 78506250 78506250 1 + C T UCEC 78506235 + 78506215 78506255 41 GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAATCGTAT < 41bp 1 0.0420873929029517 1 0.0275035798549652 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78506235 chr9:78506250 synonymous SNV . 0 36 hm5C_associated_SNPs_42745 0 0 0 1 1 PCSK5 chr9:78506289 5'GT 78506289 Upstream 40bp
chr17 27064862 27064862 1 + A G UCEC 27064861 + 27064841 27064881 41 CCCCCGGGGACCTGTGAGGCCAGCCATCCCACCACCACTGT CCCCCGGGGACCTGTGAGGCCGGCCATCCCACCACCACTGT < 41bp 1 0.452130424665171 1 0.145168662071228 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NEK8 ENSG00000160602 CDS Human protein_coding chr17:27064861 chr17:27064862 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_42746 0 0 1 0 1 NEK8 chr17:27064837 3'AG 27064837 Downstream 26bp
chr12 53433441 53433441 1 + C T UCEC 53433438 + 53433418 53433458 41 GATGGCAAAAAGGATCAAGACTCCAGATCTGCACCTGAGCC GATGGCAAAAAGGATCAAGACTCTAGATCTGCACCTGAGCC < 41bp 1 0.624085809236294 1 0.76581859588623 experiment 0.751828381527411 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53433438 chr12:53433441 synonymous SNV . 0 24 hm5C_associated_SNPs_42747 0 0 0 0 2 EIF4B chr12:53433414 3'AG 53433414 Downstream 28bp
chr12 53433441 53433441 1 + C T UCEC 53433438 + 53433418 53433458 41 GATGGCAAAAAGGATCAAGACTCCAGATCTGCACCTGAGCC GATGGCAAAAAGGATCAAGACTCTAGATCTGCACCTGAGCC < 41bp 1 0.624085809236294 1 0.76581859588623 experiment 0.751828381527411 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53433438 chr12:53433441 synonymous SNV . 0 24 hm5C_associated_SNPs_42747 0 0 0 0 2 EIF4B chr12:53433486 5'GT 53433486 Upstream 46bp
chr16 2806594 2806594 1 + A G UCEC 2806582 + 2806562 2806602 41 TCGAGCTGCGATGCCTCGAGCTGGAGGAGATGATGGAAGAG TCGAGCTGCGATGCCTCGAGCTGGAGGAGATGGTGGAAGAG < 41bp 1 0.799331491510274 1 0.619839906692505 experiment 0.401337016979453 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2806582 chr16:2806594 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_42748 0 0 1 0 1 SRRM2 chr16:2806607 5'GT 2806607 Upstream 14bp
chr8 28906492 28906492 1 + A G UCEC 28906477 + 28906457 28906497 41 TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGA TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCGTGGGA < 41bp 1 0.043075663678899 1 0.133563250303268 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906477 chr8:28906492 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_42749 0 0 1 0 4 HMBOX1 chr8:28906471 3'AG 28906471 Downstream 22bp
chr8 28906492 28906492 1 + A G UCEC 28906477 + 28906457 28906497 41 TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGA TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCGTGGGA < 41bp 1 0.043075663678899 1 0.133563250303268 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906477 chr8:28906492 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_42749 0 0 1 0 4 HMBOX1 chr8:28906474 3'AG 28906474 Downstream 19bp
chr8 28906492 28906492 1 + A G UCEC 28906477 + 28906457 28906497 41 TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGA TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCGTGGGA < 41bp 1 0.043075663678899 1 0.133563250303268 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906477 chr8:28906492 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_42749 0 0 1 0 4 HMBOX1 chr8:28906477 3'AG 28906477 Downstream 16bp
chr8 28906492 28906492 1 + A G UCEC 28906477 + 28906457 28906497 41 TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGA TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCGTGGGA < 41bp 1 0.043075663678899 1 0.133563250303268 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906477 chr8:28906492 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_42749 0 0 1 0 4 HMBOX1 chr8:28906565 5'GT 28906565 Upstream 74bp
chr8 28906492 28906492 1 + A G UCEC 28906481 + 28906461 28906501 41 TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATAGA TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCGTGGGATAGA < 41bp 1 0.248350022873758 1 0.752850532531738 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906481 chr8:28906492 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_42750 0 0 1 0 4 HMBOX1 chr8:28906471 3'AG 28906471 Downstream 22bp
chr8 28906492 28906492 1 + A G UCEC 28906481 + 28906461 28906501 41 TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATAGA TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCGTGGGATAGA < 41bp 1 0.248350022873758 1 0.752850532531738 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906481 chr8:28906492 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_42750 0 0 1 0 4 HMBOX1 chr8:28906474 3'AG 28906474 Downstream 19bp
chr8 28906492 28906492 1 + A G UCEC 28906481 + 28906461 28906501 41 TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATAGA TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCGTGGGATAGA < 41bp 1 0.248350022873758 1 0.752850532531738 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906481 chr8:28906492 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_42750 0 0 1 0 4 HMBOX1 chr8:28906477 3'AG 28906477 Downstream 16bp
chr8 28906492 28906492 1 + A G UCEC 28906481 + 28906461 28906501 41 TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATAGA TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCGTGGGATAGA < 41bp 1 0.248350022873758 1 0.752850532531738 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906481 chr8:28906492 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_42750 0 0 1 0 4 HMBOX1 chr8:28906565 5'GT 28906565 Upstream 74bp
chr8 28906492 28906492 1 + A G UCEC 28906512 + 28906492 28906532 41 ATGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT GTGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT < 41bp 1 0.560465496887329 1 0.454638510942459 experiment 0.879069006225342 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906512 chr8:28906492 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_42751 0 0 1 0 4 HMBOX1 chr8:28906471 3'AG 28906471 Downstream 22bp
chr8 28906492 28906492 1 + A G UCEC 28906512 + 28906492 28906532 41 ATGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT GTGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT < 41bp 1 0.560465496887329 1 0.454638510942459 experiment 0.879069006225342 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906512 chr8:28906492 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_42751 0 0 1 0 4 HMBOX1 chr8:28906474 3'AG 28906474 Downstream 19bp
chr8 28906492 28906492 1 + A G UCEC 28906512 + 28906492 28906532 41 ATGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT GTGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT < 41bp 1 0.560465496887329 1 0.454638510942459 experiment 0.879069006225342 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906512 chr8:28906492 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_42751 0 0 1 0 4 HMBOX1 chr8:28906477 3'AG 28906477 Downstream 16bp
chr8 28906492 28906492 1 + A G UCEC 28906512 + 28906492 28906532 41 ATGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT GTGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT < 41bp 1 0.560465496887329 1 0.454638510942459 experiment 0.879069006225342 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906512 chr8:28906492 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_42751 0 0 1 0 4 HMBOX1 chr8:28906565 5'GT 28906565 Upstream 74bp
chr10 43285938 43285938 1 + G A UCEC 43285946 + 43285926 43285966 41 ATTAAAACACAGGTTCTGGACGGAAGTTTACCCGGTACGAA ATTAAAACACAGATTCTGGACGGAAGTTTACCCGGTACGAA < 41bp 1 0.631280632171596 1 0.307745963335037 experiment 0.737438735656808 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BMS1 ENSG00000165733 CDS Human protein_coding chr10:43285946 chr10:43285938 synonymous SNV . 0 13 hm5C_associated_SNPs_42752 0 0 1 0 1 BMS1 chr10:43285959 5'GT 43285959 Upstream 22bp
chr9 2077747 2077747 1 + C T UCEC 2077760 + 2077740 2077780 41 TGCCCTCCTAATTAATGGGACCCTAAAGCATTACCAGGTAA TGCCCTCTTAATTAATGGGACCCTAAAGCATTACCAGGTAA < 41bp 1 0.105813966091847 1 0.0314510762691498 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2077760 chr9:2077747 synonymous SNV . 0 8 hm5C_associated_SNPs_42754 0 0 0 0 1 SMARCA2 chr9:2077776 5'GT 2077776 Upstream 30bp
chr17 47115715 47115715 1 + T C UCEC 47115716 + 47115696 47115736 41 AAGCAGCAGCAAGTGGACATCCCCCTTCGGCTCCTGGTGCC AAGCAGCAGCAAGTGGACACCCCCCTTCGGCTCCTGGTGCC < 41bp 1 0.200025012945309 1 0.193391919136047 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47115716 chr17:47115715 nonsynonymous SNV 0.958 1 20 hm5C_associated_SNPs_42755 0 0 1 0 1 IGF2BP1 chr17:47115811 5'GT 47115811 Upstream 97bp
chr17 47115715 47115715 1 + T C UCEC 47115718 + 47115698 47115738 41 GCAGCAGCAAGTGGACATCCCCCTTCGGCTCCTGGTGCCCA GCAGCAGCAAGTGGACACCCCCCTTCGGCTCCTGGTGCCCA < 41bp 1 0.0488919543533077 1 0.0583628118038177 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47115718 chr17:47115715 nonsynonymous SNV 0.958 1 18 hm5C_associated_SNPs_42756 0 0 1 0 1 IGF2BP1 chr17:47115811 5'GT 47115811 Upstream 97bp
chr7 66703375 66703375 1 + T C UCEC 66703395 + 66703375 66703415 41 TGGATCAAAAACGTTCAGCGCAAAGGATTATATGGCCAGAA CGGATCAAAAACGTTCAGCGCAAAGGATTATATGGCCAGAA < 41bp 1 0.347822496865088 1 0.128904014825821 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66703395 chr7:66703375 synonymous SNV . 0 1 hm5C_associated_SNPs_42757 0 0 0 0 1 TYW1 chr7:66703295 3'AG 66703295 Downstream 81bp
chr10 51581323 51581323 1 + C T UCEC 51581313 + 51581293 51581333 41 CTGAAGATTCAACTGTCCTGCTCTTTGAAGCTGACACAATT CTGAAGATTCAACTGTCCTGCTCTTTGAAGTTGACACAATT < 41bp 1 0.141815725049467 1 0.0799928307533264 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCOA4 ENSG00000138293 CDS Human other chr10:51581313 chr10:51581323 nonsynonymous SNV . 0 31 hm5C_associated_SNPs_42758 0 0 1 0 2 NCOA4 chr10:51581270 3'AG 51581270 Downstream 54bp
chr10 51581323 51581323 1 + C T UCEC 51581313 + 51581293 51581333 41 CTGAAGATTCAACTGTCCTGCTCTTTGAAGCTGACACAATT CTGAAGATTCAACTGTCCTGCTCTTTGAAGTTGACACAATT < 41bp 1 0.141815725049467 1 0.0799928307533264 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCOA4 ENSG00000138293 CDS Human other chr10:51581313 chr10:51581323 nonsynonymous SNV . 0 31 hm5C_associated_SNPs_42758 0 0 1 0 2 NCOA4 chr10:51581378 5'GT 51581378 Upstream 56bp
chrX 17770008 17770008 1 + G A UCEC 17770024 + 17770004 17770044 41 GGTCGGTGGAAGCAGTGGTCCTATTTCTAAAACAAACAGAT GGTCAGTGGAAGCAGTGGTCCTATTTCTAAAACAAACAGAT < 41bp 1 0.273848131042253 1 0.184457838535309 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCML1 ENSG00000047634 CDS Human protein_coding chrX:17770024 chrX:17770008 synonymous SNV . 0 5 hm5C_associated_SNPs_42759 0 0 1 0 2 SCML1 chrX:17769935 3'AG 17769935 Downstream 74bp
chrX 17770008 17770008 1 + G A UCEC 17770024 + 17770004 17770044 41 GGTCGGTGGAAGCAGTGGTCCTATTTCTAAAACAAACAGAT GGTCAGTGGAAGCAGTGGTCCTATTTCTAAAACAAACAGAT < 41bp 1 0.273848131042253 1 0.184457838535309 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCML1 ENSG00000047634 CDS Human protein_coding chrX:17770024 chrX:17770008 synonymous SNV . 0 5 hm5C_associated_SNPs_42759 0 0 1 0 2 SCML1 chrX:17770086 5'GT 17770086 Upstream 79bp
chr19 4685666 4685666 1 - G A UCEC 4685671 - 4685651 4685691 41 TTGCAGCCAGGGAAGAAGCACCCCACCGTCCTCTTTGTATA TTGCAGCCAGGGAAGAAGCACCCCATCGTCCTCTTTGTATA < 41bp 1 0.29236593932617 1 0.174520641565323 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPP9 ENSG00000142002 CDS Human protein_coding chr19:4685671 chr19:4685666 nonsynonymous SNV 0.996 2 26 hm5C_associated_SNPs_42761 0 0 0 0 1 DPP9 chr19:4685638 5'GT 4685638 Upstream 29bp
chr1 54678320 54678320 1 + C T UCEC 54678323 + 54678303 54678343 41 CCCTGGCTCAGGCCCGGCTCCTCTATGGGGTATGTAGGTGG CCCTGGCTCAGGCCCGGTTCCTCTATGGGGTATGTAGGTGG < 41bp 1 0.747431507846954 1 0.852733254432678 experiment 0.505136984306093 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MRPL37 ENSG00000116221 CDS Human protein_coding chr1:54678323 chr1:54678320 nonsynonymous SNV 0.994 0 18 hm5C_associated_SNPs_42762 0 0 1 0 1 MRPL37 chr1:54678331 5'GT 54678331 Upstream 12bp
chr7 6631384 6631384 1 + C T UCEC 6631401 + 6631381 6631421 41 CAGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCT CAGTCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCT < 41bp 1 0.152212285520699 1 0.178245723247528 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631401 chr7:6631384 synonymous SNV . 0 4 hm5C_associated_SNPs_42763 0 0 1 0 1 C7orf26 chr7:6631334 3'AG 6631334 Downstream 51bp
chr7 6631384 6631384 1 + C T UCEC 6631402 + 6631382 6631422 41 AGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCTT AGTCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCTT < 41bp 1 0.479922084495613 1 0.544707953929901 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631402 chr7:6631384 synonymous SNV . 0 3 hm5C_associated_SNPs_42764 0 0 1 0 1 C7orf26 chr7:6631334 3'AG 6631334 Downstream 51bp
chr16 460305 460305 1 + A G UCEC 460313 + 460293 460333 41 TTCAAGACCGTGATGGACATCGATACCAGCGGCACCTTCAA TTCAAGACCGTGGTGGACATCGATACCAGCGGCACCTTCAA < 41bp 1 0.624116465707557 1 0.413625776767731 experiment 0.751767068584885 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DECR2 ENSG00000242612 CDS Human protein_coding chr16:460313 chr16:460305 nonsynonymous SNV 0.823 0 13 hm5C_associated_SNPs_42766 0 0 1 0 2 DECR2 chr16:460243 3'AG 460243 Downstream 63bp
chr16 460305 460305 1 + A G UCEC 460313 + 460293 460333 41 TTCAAGACCGTGATGGACATCGATACCAGCGGCACCTTCAA TTCAAGACCGTGGTGGACATCGATACCAGCGGCACCTTCAA < 41bp 1 0.624116465707557 1 0.413625776767731 experiment 0.751767068584885 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DECR2 ENSG00000242612 CDS Human protein_coding chr16:460313 chr16:460305 nonsynonymous SNV 0.823 0 13 hm5C_associated_SNPs_42766 0 0 1 0 2 DECR2 chr16:460367 5'GT 460367 Upstream 63bp
chr9 135942486 135942486 1 + G A UCEC 135942479 + 135942459 135942499 41 TTGGTTCTGCCCCCAGGTGGCTGAGAAGGTGGGTTGCCCTG TTGGTTCTGCCCCCAGGTGGCTGAGAAAGTGGGTTGCCCTG < 41bp 1 0.52131821046863 1 0.405447691679001 experiment 0.95736357906274 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942479 chr9:135942486 synonymous SNV . 0 28 hm5C_associated_SNPs_42767 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 12bp
chr9 135942486 135942486 1 + G A UCEC 135942495 + 135942475 135942515 41 GTGGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAG GTGGCTGAGAAAGTGGGTTGCCCTGTGGGTGATGCCGCCAG < 41bp 1 0.22837517256008 1 0.0630083382129669 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942495 chr9:135942486 synonymous SNV . 0 12 hm5C_associated_SNPs_42768 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 12bp
chr9 135942486 135942486 1 + G A UCEC 135942496 + 135942476 135942516 41 TGGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGG TGGCTGAGAAAGTGGGTTGCCCTGTGGGTGATGCCGCCAGG < 41bp 1 0.206236014589677 1 0.115200340747833 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942496 chr9:135942486 synonymous SNV . 0 11 hm5C_associated_SNPs_42769 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 12bp
chr9 135942486 135942486 1 + G A UCEC 135942497 + 135942477 135942517 41 GGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGGA GGCTGAGAAAGTGGGTTGCCCTGTGGGTGATGCCGCCAGGA < 41bp 1 0.507411160908207 1 0.653024077415466 experiment 0.985177678183586 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942497 chr9:135942486 synonymous SNV . 0 10 hm5C_associated_SNPs_42770 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 12bp
chr11 118369120 118369120 1 + G A UCEC 118369113 + 118369093 118369133 41 ATTCTGCCAAAAGCCAGGAGCCACCGTGGGTTGCTGTCTCA ATTCTGCCAAAAGCCAGGAGCCACCGTAGGTTGCTGTCTCA < 41bp 1 0.0201284418290379 1 0.335254311561584 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118369113 chr11:118369120 synonymous SNV . 0 28 hm5C_associated_SNPs_42771 0 0 1 0 1 KMT2A chr11:118369085 3'AG 118369085 Downstream 36bp
chr21 45534135 45534135 1 + G A UCEC 45534115 + 45534095 45534135 41 TCTGTGCTGCACCACTTCCACTTCAAGGGCTCTGTGCACAG TCTGTGCTGCACCACTTCCACTTCAAGGGCTCTGTGCACAA < 41bp 1 0.752761575786357 1 0.65299254655838 experiment 0.494476848427287 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45534115 chr21:45534135 nonsynonymous SNV 0.964 1 41 hm5C_associated_SNPs_42772 0 0 1 0 2 PWP2 chr21:45534060 3'AG 45534060 Downstream 76bp
chr21 45534135 45534135 1 + G A UCEC 45534115 + 45534095 45534135 41 TCTGTGCTGCACCACTTCCACTTCAAGGGCTCTGTGCACAG TCTGTGCTGCACCACTTCCACTTCAAGGGCTCTGTGCACAA < 41bp 1 0.752761575786357 1 0.65299254655838 experiment 0.494476848427287 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45534115 chr21:45534135 nonsynonymous SNV 0.964 1 41 hm5C_associated_SNPs_42772 0 0 1 0 2 PWP2 chr21:45534159 5'GT 45534159 Upstream 25bp
chr2 71780270 71780270 1 + T C UCEC 71780268 + 71780248 71780288 41 CGGGAACAAGTTCGACATGACCTGCCTGCCGCTGGCCTCCA CGGGAACAAGTTCGACATGACCCGCCTGCCGCTGGCCTCCA < 41bp 1 0.313285820552134 1 0.0149896144866943 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71780268 chr2:71780270 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_42776 0 0 0 0 1 DYSF chr2:71780318 5'GT 71780318 Upstream 49bp
chr1 28857120 28857120 1 + C T UCEC 28857124 + 28857104 28857144 41 CTCCTGACCAGAAAACCCGACCAGGTGGCTCCGCGCCCGGG CTCCTGACCAGAAAACTCGACCAGGTGGCTCCGCGCCCGGG < 41bp 1 0.462618982722918 1 0.2137371301651 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28857124 chr1:28857120 synonymous SNV . 0 17 hm5C_associated_SNPs_42777 0 0 0 0 2 RCC1 chr1:28857035 3'AG 28857035 Downstream 86bp
chr1 28857120 28857120 1 + C T UCEC 28857124 + 28857104 28857144 41 CTCCTGACCAGAAAACCCGACCAGGTGGCTCCGCGCCCGGG CTCCTGACCAGAAAACTCGACCAGGTGGCTCCGCGCCCGGG < 41bp 1 0.462618982722918 1 0.2137371301651 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28857124 chr1:28857120 synonymous SNV . 0 17 hm5C_associated_SNPs_42777 0 0 0 0 2 RCC1 chr1:28857127 5'GT 28857127 Upstream 8bp
chr19 19308370 19308370 1 + C T UCEC 19308371 + 19308351 19308391 41 CAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGCC CAGACGAGCGCGGCTTCACTCCCCTCATCTGGGCCTCCGCC < 41bp 1 0.35676114647514 1 0.172363787889481 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308371 chr19:19308370 synonymous SNV . 0 20 hm5C_associated_SNPs_42778 0 0 1 0 2 RFXANK chr19:19308330 3'AG 19308330 Downstream 41bp
chr19 19308370 19308370 1 + C T UCEC 19308371 + 19308351 19308391 41 CAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGCC CAGACGAGCGCGGCTTCACTCCCCTCATCTGGGCCTCCGCC < 41bp 1 0.35676114647514 1 0.172363787889481 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308371 chr19:19308370 synonymous SNV . 0 20 hm5C_associated_SNPs_42778 0 0 1 0 2 RFXANK chr19:19308430 5'GT 19308430 Upstream 61bp
chr19 580412 580412 1 + C A UCEC 580394 + 580374 580414 41 TGCAGGGTGGACTCCGACGACCAGTGGGGAGAGTACTCCTG TGCAGGGTGGACTCCGACGACCAGTGGGGAGAGTACTCATG < 41bp 1 0.383445553999633 1 0.145904868841171 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:580394 chr19:580412 synonymous SNV . 0 39 hm5C_associated_SNPs_42779 0 0 1 0 1 BSG chr19:580461 5'GT 580461 Upstream 50bp
chr7 102937922 102937922 1 + G A UCEC 102937920 + 102937900 102937940 41 AGCAGAAATGGCGGCTGCGGCGGCTCGAGTGGTGTTGTCAT AGCAGAAATGGCGGCTGCGGCGACTCGAGTGGTGTTGTCAT < 41bp 1 0.546885545852565 1 0.528308510780334 experiment 0.906228908294869 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PMPCB ENSG00000105819 CDS Human protein_coding chr7:102937920 chr7:102937922 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_42781 0 0 1 0 1 PMPCB chr7:102938005 5'GT 102938005 Upstream 84bp
chr19 7604912 7604912 1 + C A UCEC 7604931 + 7604911 7604951 41 CCTCTGAAGTGCTTTATATGCTCAAGAACGTCCGGTCAGTG CATCTGAAGTGCTTTATATGCTCAAGAACGTCCGGTCAGTG < 41bp 1 0.637792934601011 1 0.352538824081421 experiment 0.724414130797978 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7604931 chr19:7604912 synonymous SNV . 0 2 hm5C_associated_SNPs_42782 0 0 1 0 1 PNPLA6 chr19:7604944 5'GT 7604944 Upstream 33bp
chr22 20128455 20128455 1 + C T UCEC 20128461 + 20128441 20128481 41 CGCCTTTCCTTAGGCCTGAACTCCTGGACCGAGCTGCACCG CGCCTTTCCTTAGGTCTGAACTCCTGGACCGAGCTGCACCG < 41bp 1 0.361504972910689 1 0.874370455741882 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZDHHC8 ENSG00000099904 CDS Human protein_coding chr22:20128461 chr22:20128455 nonsynonymous SNV 0.195 3 15 hm5C_associated_SNPs_42783 0 0 1 0 2 ZDHHC8 chr22:20128394 3'AG 20128394 Downstream 62bp
chr22 20128455 20128455 1 + C T UCEC 20128461 + 20128441 20128481 41 CGCCTTTCCTTAGGCCTGAACTCCTGGACCGAGCTGCACCG CGCCTTTCCTTAGGTCTGAACTCCTGGACCGAGCTGCACCG < 41bp 1 0.361504972910689 1 0.874370455741882 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZDHHC8 ENSG00000099904 CDS Human protein_coding chr22:20128461 chr22:20128455 nonsynonymous SNV 0.195 3 15 hm5C_associated_SNPs_42783 0 0 1 0 2 ZDHHC8 chr22:20128535 5'GT 20128535 Upstream 81bp
chr2 32773051 32773051 1 + G A UCEC 32773033 + 32773013 32773053 41 GGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAGGCTGGA GGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAGGCTAGA < 41bp 1 0.206184248997308 1 0.098798543214798 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773033 chr2:32773051 synonymous SNV . 0 39 hm5C_associated_SNPs_42784 0 0 1 0 1 BIRC6 chr2:32773081 5'GT 32773081 Upstream 31bp
chr2 32773051 32773051 1 + G A UCEC 32773043 + 32773023 32773063 41 TGGAACAAGCCTTAACTAAGCAAAGGCTGGAAGAGGAACAT TGGAACAAGCCTTAACTAAGCAAAGGCTAGAAGAGGAACAT < 41bp 1 0.175562037434025 1 0.633621037006378 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773043 chr2:32773051 synonymous SNV . 0 29 hm5C_associated_SNPs_42785 0 0 1 0 1 BIRC6 chr2:32773081 5'GT 32773081 Upstream 31bp
chr9 104307082 104307082 1 + T C UCEC 104307070 + 104307050 104307090 41 TAATCTGATAGTGGAGGAAGCAGTGCAGGAGCTGAACTCTT TAATCTGATAGTGGAGGAAGCAGTGCAGGAGCCGAACTCTT < 41bp 1 0.321250293386697 1 0.612744390964508 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF20 ENSG00000155827 CDS Human protein_coding chr9:104307070 chr9:104307082 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_42787 0 0 1 0 2 RNF20 chr9:104307049 3'AG 104307049 Downstream 34bp
chr9 104307082 104307082 1 + T C UCEC 104307070 + 104307050 104307090 41 TAATCTGATAGTGGAGGAAGCAGTGCAGGAGCTGAACTCTT TAATCTGATAGTGGAGGAAGCAGTGCAGGAGCCGAACTCTT < 41bp 1 0.321250293386697 1 0.612744390964508 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF20 ENSG00000155827 CDS Human protein_coding chr9:104307070 chr9:104307082 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_42787 0 0 1 0 2 RNF20 chr9:104307167 5'GT 104307167 Upstream 86bp
chr2 89028811 89028811 1 + C A UCEC 89028799 + 89028779 89028819 41 TTCCCTGTCCTCCGCAGGCCCGCCAGCTCATCCTGCAGTAT TTCCCTGTCCTCCGCAGGCCCGCCAGCTCATCATGCAGTAT < 41bp 1 0.755315944906296 1 0.265694916248322 experiment 0.489368110187409 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPIA ENSG00000153574 CDS Human protein_coding chr2:89028799 chr2:89028811 nonsynonymous SNV 0.998 1 33 hm5C_associated_SNPs_42789 0 0 1 0 2 RPIA chr2:89028796 3'AG 89028796 Downstream 16bp
chr2 89028811 89028811 1 + C A UCEC 89028799 + 89028779 89028819 41 TTCCCTGTCCTCCGCAGGCCCGCCAGCTCATCCTGCAGTAT TTCCCTGTCCTCCGCAGGCCCGCCAGCTCATCATGCAGTAT < 41bp 1 0.755315944906296 1 0.265694916248322 experiment 0.489368110187409 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPIA ENSG00000153574 CDS Human protein_coding chr2:89028799 chr2:89028811 nonsynonymous SNV 0.998 1 33 hm5C_associated_SNPs_42789 0 0 1 0 2 RPIA chr2:89028855 5'GT 89028855 Upstream 45bp
chr2 135160678 135160678 1 + G A UCEC 135160666 + 135160646 135160686 41 TACGTGAAAAACCATGGTATCCTCAGTGGACGGGACCTGCA TACGTGAAAAACCATGGTATCCTCAGTGGACGAGACCTGCA < 41bp 1 0.194578467706426 1 0.065963476896286 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135160666 chr2:135160678 synonymous SNV . 0 33 hm5C_associated_SNPs_42791 0 0 1 0 1 MGAT5 chr2:135160708 5'GT 135160708 Upstream 31bp
chr3 184039158 184039158 1 + T C UCEC 184039162 + 184039142 184039182 41 CCCAGCCTTCGTCGCCTTCTCCGACCCCATCACCATCCCCA CCCAGCCTTCGTCGCCCTCTCCGACCCCATCACCATCCCCA < 41bp 1 0.216134008516784 1 0.418859213590622 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184039162 chr3:184039158 synonymous SNV . 0 17 hm5C_associated_SNPs_42792 0 0 1 0 1 EIF4G1 chr3:184039070 3'AG 184039070 Downstream 89bp
chr3 184039158 184039158 1 + T C UCEC 184039163 + 184039143 184039183 41 CCAGCCTTCGTCGCCTTCTCCGACCCCATCACCATCCCCAG CCAGCCTTCGTCGCCCTCTCCGACCCCATCACCATCCCCAG < 41bp 1 0.385664312300736 1 0.787561893463135 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184039163 chr3:184039158 synonymous SNV . 0 16 hm5C_associated_SNPs_42793 0 0 1 0 1 EIF4G1 chr3:184039070 3'AG 184039070 Downstream 89bp
chr9 139234220 139234220 1 + G A UCEC 139234211 + 139234191 139234231 41 CCTGGGAAATGCCTACGTGTCCATGGGGCGCCCAGCGCAGG CCTGGGAAATGCCTACGTGTCCATGGGGCACCCAGCGCAGG < 41bp 1 0.251469869275254 1 0.11086717247963 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139234211 chr9:139234220 nonsynonymous SNV 0.992 1 30 hm5C_associated_SNPs_42794 0 0 0 0 1 GPSM1 chr9:139234272 5'GT 139234272 Upstream 53bp
chr9 139234220 139234220 1 + G A UCEC 139234212 + 139234192 139234232 41 CTGGGAAATGCCTACGTGTCCATGGGGCGCCCAGCGCAGGC CTGGGAAATGCCTACGTGTCCATGGGGCACCCAGCGCAGGC < 41bp 1 0.684980430610098 1 0.259187608957291 experiment 0.630039138779803 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139234212 chr9:139234220 nonsynonymous SNV 0.992 1 29 hm5C_associated_SNPs_42795 0 0 0 0 1 GPSM1 chr9:139234272 5'GT 139234272 Upstream 53bp
chr1 110034244 110034244 1 + T G UCEC 110034237 + 110034217 110034257 41 TATTGCCGGCCAGTGAAGGCCAAGCACTGTCAGGCTGGTGC TATTGCCGGCCAGTGAAGGCCAAGCACGGTCAGGCTGGTGC < 41bp 1 0.368704031921983 1 0.268638074398041 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATXN7L2 ENSG00000162650 CDS Human protein_coding chr1:110034237 chr1:110034244 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_42796 0 0 0 0 1 ATXN7L2 chr1:110034339 5'GT 110034339 Upstream 96bp
chr19 46026018 46026018 1 + A G UCEC 46026006 + 46025986 46026026 41 CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGA CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGGGTGGTCGA < 41bp 1 0.611133460121702 1 0.560025215148926 experiment 0.777733079756596 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026006 chr19:46026018 nonsynonymous SNV 0.475 0 33 hm5C_associated_SNPs_42797 0 0 1 0 3 VASP chr19:46025976 3'AG 46025976 Downstream 43bp
chr19 46026018 46026018 1 + A G UCEC 46026006 + 46025986 46026026 41 CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGA CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGGGTGGTCGA < 41bp 1 0.611133460121702 1 0.560025215148926 experiment 0.777733079756596 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026006 chr19:46026018 nonsynonymous SNV 0.475 0 33 hm5C_associated_SNPs_42797 0 0 1 0 3 VASP chr19:46025979 3'AG 46025979 Downstream 40bp
chr19 46026018 46026018 1 + A G UCEC 46026006 + 46025986 46026026 41 CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGA CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGGGTGGTCGA < 41bp 1 0.611133460121702 1 0.560025215148926 experiment 0.777733079756596 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026006 chr19:46026018 nonsynonymous SNV 0.475 0 33 hm5C_associated_SNPs_42797 0 0 1 0 3 VASP chr19:46026076 5'GT 46026076 Upstream 59bp
chr19 46026018 46026018 1 + A G UCEC 46026007 + 46025987 46026027 41 CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAA CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGGGTGGTCGAA < 41bp 1 0.3814543132882 1 0.306441605091095 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026007 chr19:46026018 nonsynonymous SNV 0.475 0 32 hm5C_associated_SNPs_42798 0 0 1 0 3 VASP chr19:46025976 3'AG 46025976 Downstream 43bp
chr19 46026018 46026018 1 + A G UCEC 46026007 + 46025987 46026027 41 CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAA CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGGGTGGTCGAA < 41bp 1 0.3814543132882 1 0.306441605091095 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026007 chr19:46026018 nonsynonymous SNV 0.475 0 32 hm5C_associated_SNPs_42798 0 0 1 0 3 VASP chr19:46025979 3'AG 46025979 Downstream 40bp
chr19 46026018 46026018 1 + A G UCEC 46026007 + 46025987 46026027 41 CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAA CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGGGTGGTCGAA < 41bp 1 0.3814543132882 1 0.306441605091095 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026007 chr19:46026018 nonsynonymous SNV 0.475 0 32 hm5C_associated_SNPs_42798 0 0 1 0 3 VASP chr19:46026076 5'GT 46026076 Upstream 59bp
chr19 46026018 46026018 1 + A G UCEC 46026008 + 46025988 46026028 41 TCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAAG TCAGGGGGGCCCACAGCCCCCAAAGCTGAGGGTGGTCGAAG < 41bp 1 0.491224616165032 1 0.489049553871155 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026008 chr19:46026018 nonsynonymous SNV 0.475 0 31 hm5C_associated_SNPs_42799 0 0 1 0 3 VASP chr19:46025976 3'AG 46025976 Downstream 43bp
chr19 46026018 46026018 1 + A G UCEC 46026008 + 46025988 46026028 41 TCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAAG TCAGGGGGGCCCACAGCCCCCAAAGCTGAGGGTGGTCGAAG < 41bp 1 0.491224616165032 1 0.489049553871155 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026008 chr19:46026018 nonsynonymous SNV 0.475 0 31 hm5C_associated_SNPs_42799 0 0 1 0 3 VASP chr19:46025979 3'AG 46025979 Downstream 40bp
chr19 46026018 46026018 1 + A G UCEC 46026008 + 46025988 46026028 41 TCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAAG TCAGGGGGGCCCACAGCCCCCAAAGCTGAGGGTGGTCGAAG < 41bp 1 0.491224616165032 1 0.489049553871155 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026008 chr19:46026018 nonsynonymous SNV 0.475 0 31 hm5C_associated_SNPs_42799 0 0 1 0 3 VASP chr19:46026076 5'GT 46026076 Upstream 59bp
chr19 45797628 45797628 1 + A G UCEC 45797648 + 45797628 45797668 41 ATGACCCGCAGAAACACCTACGTTTGCACAGAACGCCCGGG GTGACCCGCAGAAACACCTACGTTTGCACAGAACGCCCGGG < 41bp 1 0.0516367975656757 1 0.0734494030475616 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45797648 chr19:45797628 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_42800 0 0 1 0 2 MARK4 chr19:45797607 3'AG 45797607 Downstream 22bp
chr19 45797628 45797628 1 + A G UCEC 45797648 + 45797628 45797668 41 ATGACCCGCAGAAACACCTACGTTTGCACAGAACGCCCGGG GTGACCCGCAGAAACACCTACGTTTGCACAGAACGCCCGGG < 41bp 1 0.0516367975656757 1 0.0734494030475616 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45797648 chr19:45797628 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_42800 0 0 1 0 2 MARK4 chr19:45797710 5'GT 45797710 Upstream 83bp
chr5 14359526 14359526 1 + G T UCEC 14359530 + 14359510 14359550 41 TCAACCACATTGAGACGGTGCTGCAGCAGCTGGACGAGGCG TCAACCACATTGAGACTGTGCTGCAGCAGCTGGACGAGGCG < 41bp 1 0.410608747056511 1 0.562633275985718 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359530 chr5:14359526 synonymous SNV . 0 17 hm5C_associated_SNPs_42801 0 0 1 0 1 TRIO chr5:14359466 3'AG 14359466 Downstream 61bp
chr3 122399827 122399827 1 + A G UCEC 122399812 + 122399792 122399832 41 AGAACTTGAACACCAAGTTGCAGATGTACTTCCAGAGCCCG AGAACTTGAACACCAAGTTGCAGATGTACTTCCAGGGCCCG < 41bp 1 0.42409582567384 1 0.369675993919373 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARP14 ENSG00000173193 CDS Human protein_coding chr3:122399812 chr3:122399827 nonsynonymous SNV 0.896 2 36 hm5C_associated_SNPs_42802 0 0 0 0 1 PARP14 chr3:122399917 5'GT 122399917 Upstream 91bp
chr11 6591854 6591854 1 + G T UCEC 6591872 + 6591852 6591892 41 AAGGGAGCTGGATGCAATGGCAGAGTGCAAGGCCCAGATGC AATGGAGCTGGATGCAATGGCAGAGTGCAAGGCCCAGATGC < 41bp 1 0.396761381740713 1 0.809083104133606 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNHD1 ENSG00000179532 CDS Human protein_coding chr11:6591872 chr11:6591854 nonsynonymous SNV 0.873 1 3 hm5C_associated_SNPs_42804 0 0 0 0 2 DNHD1 chr11:6591848 3'AG 6591848 Downstream 7bp
chr11 6591854 6591854 1 + G T UCEC 6591872 + 6591852 6591892 41 AAGGGAGCTGGATGCAATGGCAGAGTGCAAGGCCCAGATGC AATGGAGCTGGATGCAATGGCAGAGTGCAAGGCCCAGATGC < 41bp 1 0.396761381740713 1 0.809083104133606 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNHD1 ENSG00000179532 CDS Human protein_coding chr11:6591872 chr11:6591854 nonsynonymous SNV 0.873 1 3 hm5C_associated_SNPs_42804 0 0 0 0 2 DNHD1 chr11:6591850 3'AG 6591850 Downstream 5bp
chr8 87447722 87447722 1 + G T UCEC 87447738 + 87447718 87447758 41 TTTAGGTGGAAGCTTGCTCACTTCCGTTATTTGTGCCAGGT TTTATGTGGAAGCTTGCTCACTTCCGTTATTTGTGCCAGGT < 41bp 1 0.268272045928197 1 0.0610020458698273 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WWP1 ENSG00000123124 CDS Human protein_coding chr8:87447738 chr8:87447722 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_42806 0 0 1 0 2 WWP1 chr8:87447681 3'AG 87447681 Downstream 42bp
chr8 87447722 87447722 1 + G T UCEC 87447738 + 87447718 87447758 41 TTTAGGTGGAAGCTTGCTCACTTCCGTTATTTGTGCCAGGT TTTATGTGGAAGCTTGCTCACTTCCGTTATTTGTGCCAGGT < 41bp 1 0.268272045928197 1 0.0610020458698273 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WWP1 ENSG00000123124 CDS Human protein_coding chr8:87447738 chr8:87447722 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_42806 0 0 1 0 2 WWP1 chr8:87447756 5'GT 87447756 Upstream 35bp
chr17 53844737 53844737 1 + G T UCEC 53844740 + 53844720 53844760 41 GTCTTTGGTGTTCTGGAGGACTGCTCACCAACTCTACTGGC GTCTTTGGTGTTCTGGATGACTGCTCACCAACTCTACTGGC < 41bp 1 0.452351196957464 1 0.094639390707016 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53844740 chr17:53844737 nonsynonymous SNV 0.037 0 18 hm5C_associated_SNPs_42807 0 0 1 0 2 PCTP chr17:53844696 3'AG 53844696 Downstream 42bp
chr17 53844737 53844737 1 + G T UCEC 53844740 + 53844720 53844760 41 GTCTTTGGTGTTCTGGAGGACTGCTCACCAACTCTACTGGC GTCTTTGGTGTTCTGGATGACTGCTCACCAACTCTACTGGC < 41bp 1 0.452351196957464 1 0.094639390707016 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53844740 chr17:53844737 nonsynonymous SNV 0.037 0 18 hm5C_associated_SNPs_42807 0 0 1 0 2 PCTP chr17:53844813 5'GT 53844813 Upstream 77bp
chr22 24574037 24574037 1 + C A UCEC 24574025 + 24574005 24574045 41 CCGGCCCTCTCCGCAGTCAGCCATCCTTTCTGCCCAGTCTG CCGGCCCTCTCCGCAGTCAGCCATCCTTTCTGACCAGTCTG < 41bp 1 0.0290641798719509 1 0.0739536881446838 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24574025 chr22:24574037 nonsynonymous SNV 0.982 4 33 hm5C_associated_SNPs_42808 0 0 0 0 1 CABIN1 chr22:24574021 3'AG 24574021 Downstream 17bp
chr22 24574037 24574037 1 + C A UCEC 24574029 + 24574009 24574049 41 CCCTCTCCGCAGTCAGCCATCCTTTCTGCCCAGTCTGCTGC CCCTCTCCGCAGTCAGCCATCCTTTCTGACCAGTCTGCTGC < 41bp 1 0.0320017414548379 1 0.0365329682826996 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24574029 chr22:24574037 nonsynonymous SNV 0.982 4 29 hm5C_associated_SNPs_42809 0 0 0 0 1 CABIN1 chr22:24574021 3'AG 24574021 Downstream 17bp
chr9 140110225 140110225 1 + C T UCEC 140110226 + 140110206 140110246 41 GTAGCCCCCTTCCGAGCAGCCATCCAGGAGCGTGTGGCCCA GTAGCCCCCTTCCGAGCAGTCATCCAGGAGCGTGTGGCCCA < 41bp 1 0.177402562958794 1 0.0554902255535126 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110226 chr9:140110225 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_42810 0 0 1 0 1 NDOR1 chr9:140110257 5'GT 140110257 Upstream 33bp
chr9 140110225 140110225 1 + C T UCEC 140110236 + 140110216 140110256 41 TCCGAGCAGCCATCCAGGAGCGTGTGGCCCAGGGCCAGACT TCCGAGCAGTCATCCAGGAGCGTGTGGCCCAGGGCCAGACT < 41bp 1 0.284578468763411 1 0.136406600475311 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110236 chr9:140110225 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_42811 0 0 1 0 1 NDOR1 chr9:140110257 5'GT 140110257 Upstream 33bp
chr3 148559711 148559711 1 + G T UCEC 148559693 + 148559673 148559713 41 TGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGAGGT TGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGATGT < 41bp 1 0.141671104735021 1 0.356166988611221 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559693 chr3:148559711 nonsynonymous SNV 0.995 1 39 hm5C_associated_SNPs_42815 0 0 0 0 1 CPB1 chr3:148559711 5'GT 148559711 Upstream 1bp
chr3 148559711 148559711 1 + G T UCEC 148559694 + 148559674 148559714 41 GGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGAGGTC GGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGATGTC < 41bp 1 0.404089491407241 1 0.404563248157501 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559694 chr3:148559711 nonsynonymous SNV 0.995 1 38 hm5C_associated_SNPs_42816 0 0 0 0 1 CPB1 chr3:148559711 5'GT 148559711 Upstream 1bp
chr14 61789177 61789177 1 + G A UCEC 61789158 + 61789138 61789178 41 GAGCTGCTGCGCACGACCGGCGCCTCGGACACCTTCGAGGG GAGCTGCTGCGCACGACCGGCGCCTCGGACACCTTCGAGAG < 41bp 1 0.429861925238942 1 0.227638334035873 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCH ENSG00000027075 CDS Human protein_coding chr14:61789158 chr14:61789177 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_42817 0 0 0 0 1 PRKCH chr14:61789182 5'GT 61789182 Upstream 6bp
chr15 91358377 91358377 1 + C T UCEC 91358367 + 91358347 91358387 41 TAGAAAGATATCTTCCAAAACGAAATCCTCCAGCATCATTG TAGAAAGATATCTTCCAAAACGAAATCCTCTAGCATCATTG < 41bp 1 0.59881142771078 1 0.0991764664649963 experiment 0.80237714457844 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91358367 chr15:91358377 synonymous SNV . 0 31 hm5C_associated_SNPs_42818 0 0 1 0 1 BLM chr15:91358332 3'AG 91358332 Downstream 46bp
chr14 64628983 64628983 1 + C T UCEC 64628971 + 64628951 64628991 41 ACAACCTGGCAGAGATCCTGCCCCCAGCCCTGCAGGACATA ACAACCTGGCAGAGATCCTGCCCCCAGCCCTGTAGGACATA < 41bp 1 0.0769260820003325 1 0.0436230301856995 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64628971 chr14:64628983 stopgain 0.726 0 33 hm5C_associated_SNPs_42820 0 0 1 0 1 SYNE2 chr14:64628994 5'GT 64628994 Upstream 12bp
chr12 6638682 6638682 1 + G A UCEC 6638688 + 6638668 6638708 41 CCTTCCTGCAGACAGCTCCTCTCCTACATCACCAAGGACAA CCTTCCTGCAGACAACTCCTCTCCTACATCACCAAGGACAA < 41bp 1 0.284679284389495 1 0.0590895712375641 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6638688 chr12:6638682 synonymous SNV . 0 15 hm5C_associated_SNPs_42821 0 0 1 0 2 NCAPD2 chr12:6638679 3'AG 6638679 Downstream 4bp
chr12 6638682 6638682 1 + G A UCEC 6638688 + 6638668 6638708 41 CCTTCCTGCAGACAGCTCCTCTCCTACATCACCAAGGACAA CCTTCCTGCAGACAACTCCTCTCCTACATCACCAAGGACAA < 41bp 1 0.284679284389495 1 0.0590895712375641 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6638688 chr12:6638682 synonymous SNV . 0 15 hm5C_associated_SNPs_42821 0 0 1 0 2 NCAPD2 chr12:6638759 5'GT 6638759 Upstream 78bp
chr18 13056665 13056665 1 + A G UCEC 13056650 + 13056630 13056670 41 TCCTGTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCAT TCCTGTGCCGTCTGTTGGTACAAACTGTGGAATTGGACCAT < 41bp 1 0.120198253212999 1 0.305841505527496 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056650 chr18:13056665 nonsynonymous SNV 0.210 0 36 hm5C_associated_SNPs_42822 0 0 1 0 1 CEP192 chr18:13056697 5'GT 13056697 Upstream 33bp
chr18 13056665 13056665 1 + A G UCEC 13056654 + 13056634 13056674 41 GTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCATGGGA GTGCCGTCTGTTGGTACAAACTGTGGAATTGGACCATGGGA < 41bp 1 0.319949517148013 1 0.255760014057159 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056654 chr18:13056665 nonsynonymous SNV 0.210 0 32 hm5C_associated_SNPs_42823 0 0 1 0 1 CEP192 chr18:13056697 5'GT 13056697 Upstream 33bp
chr9 19336400 19336400 1 + T C UCEC 19336394 + 19336374 19336414 41 AAAAGACTGTGCAAAGGTCACAGGTCTCCTCAATATCAGGT AAAAGACTGTGCAAAGGTCACAGGTCCCCTCAATATCAGGT < 41bp 1 0.313162210356418 1 0.420017689466476 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DENND4C ENSG00000137145 CDS Human protein_coding chr9:19336394 chr9:19336400 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_42825 0 0 1 0 1 DENND4C chr9:19336412 5'GT 19336412 Upstream 13bp
chr17 4859869 4859869 1 + T C UCEC 4859885 + 4859865 4859905 41 CAGGTGCAAACTGGCTCAGTCTAATGGCTGGGGGGTGATGG CAGGCGCAAACTGGCTCAGTCTAATGGCTGGGGGGTGATGG < 41bp 1 0.362455283022408 1 0.0988220274448395 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859885 chr17:4859869 nonsynonymous SNV 0.915 5 5 hm5C_associated_SNPs_42827 0 0 1 0 1 ENO3 chr17:4859868 3'AG 4859868 Downstream 2bp
chr6 145103206 145103206 1 + C T UCEC 145103189 + 145103169 145103209 41 ATGATGGACTTGAGCAAATGCATAAGGACCTGGTCAACGTT ATGATGGACTTGAGCAAATGCATAAGGACCTGGTCAATGTT < 41bp 1 0.142466248675335 1 0.144589841365814 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:145103189 chr6:145103206 synonymous SNV . 0 38 hm5C_associated_SNPs_42828 0 0 0 0 1 UTRN chr6:145103259 5'GT 145103259 Upstream 54bp
chr12 1517390 1517390 1 + A G UCEC 1517370 + 1517350 1517390 41 CGAGGATGACCACTTCAAATCCTCCCATTCCAATCAAACAA CGAGGATGACCACTTCAAATCCTCCCATTCCAATCAAACAG < 41bp 1 0.0295054347713061 1 0.0938459634780884 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ERC1 ENSG00000082805 CDS Human protein_coding chr12:1517370 chr12:1517390 nonsynonymous SNV 0.997 4 41 hm5C_associated_SNPs_42829 0 0 0 0 2 ERC1 chr12:1517315 3'AG 1517315 Downstream 76bp
chr12 1517390 1517390 1 + A G UCEC 1517370 + 1517350 1517390 41 CGAGGATGACCACTTCAAATCCTCCCATTCCAATCAAACAA CGAGGATGACCACTTCAAATCCTCCCATTCCAATCAAACAG < 41bp 1 0.0295054347713061 1 0.0938459634780884 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ERC1 ENSG00000082805 CDS Human protein_coding chr12:1517370 chr12:1517390 nonsynonymous SNV 0.997 4 41 hm5C_associated_SNPs_42829 0 0 0 0 2 ERC1 chr12:1517413 5'GT 1517413 Upstream 24bp
chr19 14512336 14512336 1 + C T UCEC 14512320 + 14512300 14512340 41 CTTGAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA CTTGAAGATATCATGAGGATCCTGGCCAAGAGCCTGTCTAA < 41bp 1 0.237933041017746 1 0.0492123961448669 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14512320 chr19:14512336 nonsynonymous SNV 0.003 1 37 hm5C_associated_SNPs_42830 0 0 1 0 1 ADGRE5 chr19:14512375 5'GT 14512375 Upstream 40bp
chr5 61669593 61669593 1 + G A UCEC 61669583 + 61669563 61669603 41 ATAATGCACCATCCACCAAACCAGATTGATGACTTAGAGAC ATAATGCACCATCCACCAAACCAGATTGATAACTTAGAGAC < 41bp 1 0.699749732568047 1 0.38718655705452 experiment 0.600500534863906 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF2A ENSG00000068796 CDS Human protein_coding chr5:61669583 chr5:61669593 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_42832 0 0 1 0 1 KIF2A chr5:61669664 5'GT 61669664 Upstream 72bp
chr13 24858274 24858274 1 + T C UCEC 24858291 + 24858271 24858311 41 AGTTTCTTCAGATGGAGGTACTGAGCCCTCTGCCTTAGTGG AGTCTCTTCAGATGGAGGTACTGAGCCCTCTGCCTTAGTGG < 41bp 1 0.149686530030553 1 0.316577911376953 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPATA13 ENSG00000182957;ENSG00000273167 CDS Human other chr13:24858291 chr13:24858274 synonymous SNV . 0 4 hm5C_associated_SNPs_42833 0 0 0 0 1 SPATA13 chr13:24858273 3'AG 24858273 Downstream 2bp
chr4 26622291 26622291 1 + T C UCEC 26622308 + 26622288 26622328 41 TGGTATACATGAGGAAAGCACAGGTTGGCTATTGTTCAATT TGGCATACATGAGGAAAGCACAGGTTGGCTATTGTTCAATT < 41bp 1 0.490203259574952 1 0.407135009765625 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D19 ENSG00000109680 CDS Human protein_coding chr4:26622308 chr4:26622291 nonsynonymous SNV 0.997 0 4 hm5C_associated_SNPs_42834 0 0 1 0 2 TBC1D19 chr4:26622235 3'AG 26622235 Downstream 57bp
chr4 26622291 26622291 1 + T C UCEC 26622308 + 26622288 26622328 41 TGGTATACATGAGGAAAGCACAGGTTGGCTATTGTTCAATT TGGCATACATGAGGAAAGCACAGGTTGGCTATTGTTCAATT < 41bp 1 0.490203259574952 1 0.407135009765625 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D19 ENSG00000109680 CDS Human protein_coding chr4:26622308 chr4:26622291 nonsynonymous SNV 0.997 0 4 hm5C_associated_SNPs_42834 0 0 1 0 2 TBC1D19 chr4:26622310 5'GT 26622310 Upstream 20bp
chr3 4859841 4859841 1 + A G UCEC 4859828 + 4859808 4859848 41 AAGAGCACATCAAGGAAGAACACAACATGTGGCACTATCTG AAGAGCACATCAAGGAAGAACACAACATGTGGCGCTATCTG < 41bp 1 0.173657773337733 1 0.305477619171143 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4859828 chr3:4859841 nonsynonymous SNV 0.999 3 34 hm5C_associated_SNPs_42835 0 0 1 0 2 ITPR1 chr3:4859766 3'AG 4859766 Downstream 76bp
chr3 4859841 4859841 1 + A G UCEC 4859828 + 4859808 4859848 41 AAGAGCACATCAAGGAAGAACACAACATGTGGCACTATCTG AAGAGCACATCAAGGAAGAACACAACATGTGGCGCTATCTG < 41bp 1 0.173657773337733 1 0.305477619171143 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4859828 chr3:4859841 nonsynonymous SNV 0.999 3 34 hm5C_associated_SNPs_42835 0 0 1 0 2 ITPR1 chr3:4859926 5'GT 4859926 Upstream 86bp
chr2 204082003 204082003 1 + T C UCEC 204082013 + 204081993 204082033 41 TTCTCGAAAATTTTGGGGATCGAGCAAGCGGCTCAGCCAGA TTCTCGAAAACTTTGGGGATCGAGCAAGCGGCTCAGCCAGA < 41bp 1 0.218974271638519 1 0.386976212263107 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204082013 chr2:204082003 nonsynonymous SNV 0.997 0 11 hm5C_associated_SNPs_42836 0 0 1 0 1 NBEAL1 chr2:204081976 3'AG 204081976 Downstream 28bp
chr1 171756895 171756895 1 + T C UCEC 171756878 + 171756858 171756898 41 TCTGGTTGTACCTTCAGGTCCCCTTTCTGTCTGTGGGTGGG TCTGGTTGTACCTTCAGGTCCCCTTTCTGTCTGTGGGCGGG < 41bp 1 0.081674205820524 1 0.0246005356311798 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171756878 chr1:171756895 synonymous SNV . 0 38 hm5C_associated_SNPs_42837 0 0 1 0 1 METTL13 chr1:171756875 3'AG 171756875 Downstream 21bp
chr16 11066817 11066817 1 + C A UCEC 11066834 + 11066814 11066854 41 GCACTACATCCGAGATAAAACTGCTGTTCCTTACTTCTCCA GCAATACATCCGAGATAAAACTGCTGTTCCTTACTTCTCCA < 41bp 1 0.385835677465529 1 0.0309991240501404 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11066834 chr16:11066817 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_42839 0 0 1 0 1 CLEC16A chr16:11066795 3'AG 11066795 Downstream 23bp
chrX 21869664 21869664 1 + A T UCEC 21869650 + 21869630 21869670 41 CCTGGTATAAATTTACCCGTCAATCAACTGACCTATTTCTT CCTGGTATAAATTTACCCGTCAATCAACTGACCTTTTTCTT < 41bp 1 0.0970095674749986 1 0.118871510028839 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MBTPS2 ENSG00000012174 CDS Human protein_coding chrX:21869650 chrX:21869664 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_42841 0 0 1 0 2 MBTPS2 chrX:21869627 3'AG 21869627 Downstream 38bp
chrX 21869664 21869664 1 + A T UCEC 21869650 + 21869630 21869670 41 CCTGGTATAAATTTACCCGTCAATCAACTGACCTATTTCTT CCTGGTATAAATTTACCCGTCAATCAACTGACCTTTTTCTT < 41bp 1 0.0970095674749986 1 0.118871510028839 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MBTPS2 ENSG00000012174 CDS Human protein_coding chrX:21869650 chrX:21869664 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_42841 0 0 1 0 2 MBTPS2 chrX:21869730 5'GT 21869730 Upstream 67bp
chr1 32626293 32626293 1 + T C UCEC 32626288 + 32626268 32626308 41 ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA ACGTCTTGAACTGTTCCATCCTTAACCCTTTGTTAACGTGA < 41bp 1 0.118413912952105 1 0.593871235847473 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32626288 chr1:32626293 synonymous SNV . 0 26 hm5C_associated_SNPs_42843 0 0 1 0 3 KPNA6 chr1:32626216 3'AG 32626216 Downstream 78bp
chr1 32626293 32626293 1 + T C UCEC 32626288 + 32626268 32626308 41 ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA ACGTCTTGAACTGTTCCATCCTTAACCCTTTGTTAACGTGA < 41bp 1 0.118413912952105 1 0.593871235847473 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32626288 chr1:32626293 synonymous SNV . 0 26 hm5C_associated_SNPs_42843 0 0 1 0 3 KPNA6 chr1:32626220 3'AG 32626220 Downstream 74bp
chr1 32626293 32626293 1 + T C UCEC 32626288 + 32626268 32626308 41 ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA ACGTCTTGAACTGTTCCATCCTTAACCCTTTGTTAACGTGA < 41bp 1 0.118413912952105 1 0.593871235847473 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32626288 chr1:32626293 synonymous SNV . 0 26 hm5C_associated_SNPs_42843 0 0 1 0 3 KPNA6 chr1:32626304 5'GT 32626304 Upstream 12bp
chr17 48696112 48696112 1 + C T UCEC 48696108 + 48696088 48696128 41 TTCGTGCTGACGGCCCAGTTCGTGCTAGTCAACGTGGTGAT TTCGTGCTGACGGCCCAGTTCGTGTTAGTCAACGTGGTGAT < 41bp 1 0.579215566737522 1 0.107696533203125 experiment 0.841568866524955 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48696108 chr17:48696112 synonymous SNV . 0 25 hm5C_associated_SNPs_42844 0 0 1 0 1 CACNA1G chr17:48696016 3'AG 48696016 Downstream 97bp
chr2 46609726 46609726 1 + A G UCEC 46609709 + 46609689 46609729 41 GCCACCCAGTACCAGGACTACAGCCTGTCGTCAGCCCACAA GCCACCCAGTACCAGGACTACAGCCTGTCGTCAGCCCGCAA < 41bp 1 0.384992583837867 1 0.110350042581558 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46609709 chr2:46609726 nonsynonymous SNV 0.871 0 38 hm5C_associated_SNPs_42845 0 0 1 0 1 EPAS1 chr2:46609737 5'GT 46609737 Upstream 12bp
chr18 12658591 12658591 1 + T C UCEC 12658585 + 12658565 12658605 41 TTCCCTAGGCGCTGGATCGCCGAAGGTCTGGTTGAAAACTT TTCCCTAGGCGCTGGATCGCCGAAGGCCTGGTTGAAAACTT < 41bp 1 0.603693141601628 1 0.705003082752228 experiment 0.792613716796745 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMG2;SPIRE1 ENSG00000215527 CDS Human other chr18:12658585 chr18:12658591 synonymous SNV . 0 27 hm5C_associated_SNPs_42846 0 0 0 0 1 PSMG2;SPIRE1 chr18:12658573 3'AG 12658573 Downstream 19bp
chr14 50247447 50247447 1 + A G UCEC 50247443 + 50247423 50247463 41 GATGCCTGGACTTACTGCATCAGTAAAAATGAATGGATACA GATGCCTGGACTTACTGCATCAGTGAAAATGAATGGATACA < 41bp 1 0.18573091686936 1 0.232321232557297 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLHDC2 ENSG00000165516 CDS Human protein_coding chr14:50247443 chr14:50247447 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_42849 0 0 1 0 2 KLHDC2 chr14:50247421 3'AG 50247421 Downstream 27bp
chr14 50247447 50247447 1 + A G UCEC 50247443 + 50247423 50247463 41 GATGCCTGGACTTACTGCATCAGTAAAAATGAATGGATACA GATGCCTGGACTTACTGCATCAGTGAAAATGAATGGATACA < 41bp 1 0.18573091686936 1 0.232321232557297 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLHDC2 ENSG00000165516 CDS Human protein_coding chr14:50247443 chr14:50247447 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_42849 0 0 1 0 2 KLHDC2 chr14:50247493 5'GT 50247493 Upstream 47bp
chr20 44522631 44522631 1 + T C UCEC 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGGCTTCGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA < 41bp 1 0.139723926052388 1 0.93926477432251 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522631 nonsynonymous SNV 0.975 5 9 hm5C_associated_SNPs_42850 0 0 1 1 2 CTSA chr20:44522627 3'AG 44522627 Downstream 5bp
chr20 44522631 44522631 1 + T C UCEC 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGGCTTCGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA < 41bp 1 0.139723926052388 1 0.93926477432251 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522631 nonsynonymous SNV 0.975 5 9 hm5C_associated_SNPs_42850 0 0 1 1 2 CTSA chr20:44522711 5'GT 44522711 Upstream 81bp
chr2 27448062 27448062 1 + A G UCEC 27448047 + 27448027 27448067 41 CGAGGATCGACGGGCCTTTGCTGCCAGAATGGCAGAGATCG CGAGGATCGACGGGCCTTTGCTGCCAGAATGGCAGGGATCG < 41bp 1 0.355657465873748 1 0.0297842025756836 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27448047 chr2:27448062 nonsynonymous SNV 0.994 3 36 hm5C_associated_SNPs_42851 0 0 1 0 1 CAD chr2:27448111 5'GT 27448111 Upstream 50bp
chr19 50912090 50912090 1 + G A UCEC 50912092 + 50912072 50912112 41 CTTCTCCTCGCTGTACCCGTCCATCATGATGGCCCACAACC CTTCTCCTCGCTGTACCCATCCATCATGATGGCCCACAACC < 41bp 1 0.030931230013118 1 0.0879022181034088 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912092 chr19:50912090 synonymous SNV . 0 19 hm5C_associated_SNPs_42855 1 0 1 0 2 POLD1 chr19:50912042 3'AG 50912042 Downstream 49bp
chr19 50912090 50912090 1 + G A UCEC 50912092 + 50912072 50912112 41 CTTCTCCTCGCTGTACCCGTCCATCATGATGGCCCACAACC CTTCTCCTCGCTGTACCCATCCATCATGATGGCCCACAACC < 41bp 1 0.030931230013118 1 0.0879022181034088 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912092 chr19:50912090 synonymous SNV . 0 19 hm5C_associated_SNPs_42855 1 0 1 0 2 POLD1 chr19:50912158 5'GT 50912158 Upstream 69bp
chr3 49742457 49742457 1 + T G UCEC 49742448 + 49742428 49742468 41 GGCCCTGGCTGTTGGGGGGCCACTGCCCCTGCCCCGGCCCG GGCCCTGGCTGTTGGGGGGCCACTGCCCCGGCCCCGGCCCG < 41bp 1 0.421870222073821 1 0.664554595947266 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49742448 chr3:49742457 nonsynonymous SNV 0.993 3 30 hm5C_associated_SNPs_42858 0 0 1 0 1 RNF123 chr3:49742417 3'AG 49742417 Downstream 41bp
chr11 110333151 110333151 1 + G A UCEC 110333167 + 110333147 110333187 41 AGTGGCTGATGCCAGACAATCCATTGATGTGGGCAAGACCT AGTGACTGATGCCAGACAATCCATTGATGTGGGCAAGACCT < 41bp 1 0.174648132536257 1 0.145657658576965 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FDX1 ENSG00000137714 CDS Human protein_coding chr11:110333167 chr11:110333151 nonsynonymous SNV 0.662 1 5 hm5C_associated_SNPs_42859 0 0 0 0 1 FDX1 chr11:110333078 3'AG 110333078 Downstream 74bp
chr11 71941228 71941228 1 + A G UCEC 71941211 + 71941191 71941231 41 CCTGACCAAGATTGGGAAGTCACAGAAGTTCACGCTGAGCG CCTGACCAAGATTGGGAAGTCACAGAAGTTCACGCTGGGCG < 41bp 1 0.478471107975137 1 0.44840008020401 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71941211 chr11:71941228 nonsynonymous SNV 0.978 3 38 hm5C_associated_SNPs_42861 0 0 1 0 2 INPPL1 chr11:71941165 3'AG 71941165 Downstream 64bp
chr11 71941228 71941228 1 + A G UCEC 71941211 + 71941191 71941231 41 CCTGACCAAGATTGGGAAGTCACAGAAGTTCACGCTGAGCG CCTGACCAAGATTGGGAAGTCACAGAAGTTCACGCTGGGCG < 41bp 1 0.478471107975137 1 0.44840008020401 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71941211 chr11:71941228 nonsynonymous SNV 0.978 3 38 hm5C_associated_SNPs_42861 0 0 1 0 2 INPPL1 chr11:71941315 5'GT 71941315 Upstream 88bp
chr10 112361858 112361858 1 + G C UCEC 112361869 + 112361849 112361889 41 GTTAGATAGGGGTTACAAATCAATCATGGAACTGATGAATG GTTAGATAGCGGTTACAAATCAATCATGGAACTGATGAATG < 41bp 1 0.276609821509507 1 0.0940138101577759 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMC3 ENSG00000108055 CDS Human protein_coding chr10:112361869 chr10:112361858 nonsynonymous SNV 0.960 1 10 hm5C_associated_SNPs_42862 0 0 1 0 1 SMC3 chr10:112361936 5'GT 112361936 Upstream 79bp
chr2 204082001 204082001 1 + A C UCEC 204082013 + 204081993 204082033 41 TTCTCGAAAATTTTGGGGATCGAGCAAGCGGCTCAGCCAGA TTCTCGAACATTTTGGGGATCGAGCAAGCGGCTCAGCCAGA < 41bp 1 0.232996569824251 1 0.373231410980225 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204082013 chr2:204082001 nonsynonymous SNV 0.999 3 9 hm5C_associated_SNPs_42863 0 0 1 0 1 NBEAL1 chr2:204081976 3'AG 204081976 Downstream 26bp
chr3 150289805 150289805 1 + T C UCEC 150289790 + 150289770 150289810 41 AGTTTGGAATTCTAGTTCTACTGAGTTTTGTGCTGTATATG AGTTTGGAATTCTAGTTCTACTGAGTTTTGTGCTGCATATG < 41bp 1 0.62291891092463 1 0.159569084644318 experiment 0.754162178150739 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF2A ENSG00000144895 CDS Human protein_coding chr3:150289790 chr3:150289805 nonsynonymous SNV 0.996 4 36 hm5C_associated_SNPs_42864 0 0 1 0 1 EIF2A chr3:150289745 3'AG 150289745 Downstream 61bp
chr1 43917092 43917092 1 - T C UCEC 43917100 - 43917080 43917120 41 GGCTACAAAGGCTTCGTGGGCTGTGAGTATCAGCCTCGAGG GGCTACAAAGGCTTCGTGGGCTGTGAGTGTCAGCCTCGAGG < 41bp 1 0.294919507622542 1 0.0563547313213348 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HYI ENSG00000178922 CDS Human protein_coding chr1:43917100 chr1:43917092 nonsynonymous SNV 0.970 3 29 hm5C_associated_SNPs_42865 0 0 0 0 1 HYI chr1:43917081 5'GT 43917081 Upstream 12bp
chr1 110456953 110456953 1 + T C UCEC 110456962 + 110456942 110456982 41 AGGTGTCGGAGTACTGTAGCCACATGATTGGGAGTGGACAC AGGTGTCGGAGCACTGTAGCCACATGATTGGGAGTGGACAC < 41bp 1 0.561716434058714 1 0.729156792163849 experiment 0.876567131882571 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110456962 chr1:110456953 nonsynonymous SNV 0.988 0 12 hm5C_associated_SNPs_42866 0 0 1 0 2 CSF1 chr1:110456881 3'AG 110456881 Downstream 73bp
chr1 110456953 110456953 1 + T C UCEC 110456962 + 110456942 110456982 41 AGGTGTCGGAGTACTGTAGCCACATGATTGGGAGTGGACAC AGGTGTCGGAGCACTGTAGCCACATGATTGGGAGTGGACAC < 41bp 1 0.561716434058714 1 0.729156792163849 experiment 0.876567131882571 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110456962 chr1:110456953 nonsynonymous SNV 0.988 0 12 hm5C_associated_SNPs_42866 0 0 1 0 2 CSF1 chr1:110457003 5'GT 110457003 Upstream 51bp
chr22 19707361 19707361 1 + C T UCEC 19707377 + 19707357 19707397 41 GGTCCACAGCCTCTTCCTGACAGACTTGTACAAGGACCGGA GGTCTACAGCCTCTTCCTGACAGACTTGTACAAGGACCGGA < 41bp 1 0.255649407945364 1 0.136840164661407 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEPT5 ENSG00000184702 CDS Human protein_coding chr22:19707377 chr22:19707361 nonsynonymous SNV 0.999 2 5 hm5C_associated_SNPs_42867 0 0 1 1 1 SEPT5 chr22:19707329 3'AG 19707329 Downstream 33bp
chr1 114440562 114440562 1 - A G UCEC 114440557 - 114440537 114440577 41 CCTGTATTGTAGTGGTGGTGCAGACTTTCCGAGACCTGGTT CCTGTATTGTAGTGGCGGTGCAGACTTTCCGAGACCTGGTT < 41bp 1 0.404307629682268 1 0.196389585733414 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4B1 ENSG00000134262 CDS Human protein_coding chr1:114440557 chr1:114440562 nonsynonymous SNV 0.973 4 16 hm5C_associated_SNPs_42870 0 0 1 0 1 AP4B1 chr1:114440565 3'AG 114440565 Downstream 4bp
chr2 220505241 220505241 1 + T A UCEC 220505231 + 220505211 220505251 41 ATCTTCCTGTACATGGGGGTCACGTCCCTGTCTGGTATCCA ATCTTCCTGTACATGGGGGTCACGTCCCTGACTGGTATCCA < 41bp 1 0.305909998874699 1 0.0924261510372162 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220505231 chr2:220505241 nonsynonymous SNV 0.993 1 31 hm5C_associated_SNPs_42871 0 0 0 0 2 SLC4A3 chr2:220505152 3'AG 220505152 Downstream 90bp
chr2 220505241 220505241 1 + T A UCEC 220505231 + 220505211 220505251 41 ATCTTCCTGTACATGGGGGTCACGTCCCTGTCTGGTATCCA ATCTTCCTGTACATGGGGGTCACGTCCCTGACTGGTATCCA < 41bp 1 0.305909998874699 1 0.0924261510372162 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220505231 chr2:220505241 nonsynonymous SNV 0.993 1 31 hm5C_associated_SNPs_42871 0 0 0 0 2 SLC4A3 chr2:220505321 5'GT 220505321 Upstream 81bp
chr19 59059452 59059452 1 + A T UCEC 59059447 + 59059427 59059467 41 CCTGGAGCGGCAGCACTGGACCATGACCAAGATCCAGAAGC CCTGGAGCGGCAGCACTGGACCATGTCCAAGATCCAGAAGC < 41bp 1 0.233589118236785 1 0.0430557131767273 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59059447 chr19:59059452 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_42872 0 0 1 0 2 TRIM28 chr19:59059401 3'AG 59059401 Downstream 52bp
chr19 59059452 59059452 1 + A T UCEC 59059447 + 59059427 59059467 41 CCTGGAGCGGCAGCACTGGACCATGACCAAGATCCAGAAGC CCTGGAGCGGCAGCACTGGACCATGTCCAAGATCCAGAAGC < 41bp 1 0.233589118236785 1 0.0430557131767273 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59059447 chr19:59059452 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_42872 0 0 1 0 2 TRIM28 chr19:59059547 5'GT 59059547 Upstream 96bp
chr19 59059452 59059452 1 + A T UCEC 59059448 + 59059428 59059468 41 CTGGAGCGGCAGCACTGGACCATGACCAAGATCCAGAAGCA CTGGAGCGGCAGCACTGGACCATGTCCAAGATCCAGAAGCA < 41bp 1 0.297813037403453 1 0.12371301651001 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59059448 chr19:59059452 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_42873 0 0 1 0 2 TRIM28 chr19:59059401 3'AG 59059401 Downstream 52bp
chr19 59059452 59059452 1 + A T UCEC 59059448 + 59059428 59059468 41 CTGGAGCGGCAGCACTGGACCATGACCAAGATCCAGAAGCA CTGGAGCGGCAGCACTGGACCATGTCCAAGATCCAGAAGCA < 41bp 1 0.297813037403453 1 0.12371301651001 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59059448 chr19:59059452 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_42873 0 0 1 0 2 TRIM28 chr19:59059547 5'GT 59059547 Upstream 96bp
chr3 180666564 180666564 1 + A G UCEC 180666572 + 180666552 180666592 41 GGAGCATGCAGAATTTTTTACCATCCAGAAACAACACAGCT GGAGCATGCAGAGTTTTTTACCATCCAGAAACAACACAGCT < 41bp 1 0.0370317938234014 1 0.171768963336945 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FXR1 ENSG00000114416 CDS Human protein_coding chr3:180666572 chr3:180666564 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_42874 0 0 0 0 2 FXR1 chr3:180666509 3'AG 180666509 Downstream 56bp
chr3 180666564 180666564 1 + A G UCEC 180666572 + 180666552 180666592 41 GGAGCATGCAGAATTTTTTACCATCCAGAAACAACACAGCT GGAGCATGCAGAGTTTTTTACCATCCAGAAACAACACAGCT < 41bp 1 0.0370317938234014 1 0.171768963336945 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FXR1 ENSG00000114416 CDS Human protein_coding chr3:180666572 chr3:180666564 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_42874 0 0 0 0 2 FXR1 chr3:180666602 5'GT 180666602 Upstream 39bp
chr19 54942075 54942075 1 + T C UCEC 54942079 + 54942059 54942099 41 TGTGCCTCAGTTCCCTTCAGCGCAGGTCGGTGGGTGGGCGC TGTGCCTCAGTTCCCTCCAGCGCAGGTCGGTGGGTGGGCGC < 41bp 1 0.659537707201203 1 0.36348432302475 experiment 0.680924585597594 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54942079 chr19:54942075 nonsynonymous SNV 0.450 1 17 hm5C_associated_SNPs_42875 0 0 0 0 2 TTYH1 chr19:54941991 3'AG 54941991 Downstream 85bp
chr19 54942075 54942075 1 + T C UCEC 54942079 + 54942059 54942099 41 TGTGCCTCAGTTCCCTTCAGCGCAGGTCGGTGGGTGGGCGC TGTGCCTCAGTTCCCTCCAGCGCAGGTCGGTGGGTGGGCGC < 41bp 1 0.659537707201203 1 0.36348432302475 experiment 0.680924585597594 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54942079 chr19:54942075 nonsynonymous SNV 0.450 1 17 hm5C_associated_SNPs_42875 0 0 0 0 2 TTYH1 chr19:54942083 5'GT 54942083 Upstream 9bp
chr2 152273372 152273372 1 + C T UCEC 152273359 + 152273339 152273379 41 TCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGC TCATTAGAAATACTGTTTAACAAAGGAGAGACGTATTCTGC < 41bp 1 0.285412403324199 1 0.494898647069931 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RIF1 ENSG00000080345 CDS Human protein_coding chr2:152273359 chr2:152273372 nonsynonymous SNV 0.869 1 34 hm5C_associated_SNPs_42877 0 0 1 0 2 RIF1 chr2:152273321 3'AG 152273321 Downstream 52bp
chr2 152273372 152273372 1 + C T UCEC 152273359 + 152273339 152273379 41 TCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGC TCATTAGAAATACTGTTTAACAAAGGAGAGACGTATTCTGC < 41bp 1 0.285412403324199 1 0.494898647069931 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RIF1 ENSG00000080345 CDS Human protein_coding chr2:152273359 chr2:152273372 nonsynonymous SNV 0.869 1 34 hm5C_associated_SNPs_42877 0 0 1 0 2 RIF1 chr2:152273415 5'GT 152273415 Upstream 44bp
chr16 81053856 81053856 1 + G A UCEC 81053845 + 81053825 81053865 41 CCGTACGCCTTCACGTCCTCCTCCATGCTGAGGCGCAATAC CCGTACGCCTTCACGTCCTCCTCCATGCTGAAGCGCAATAC < 41bp 1 0.792797639448834 1 0.855668187141418 experiment 0.414404721102333 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CENPN ENSG00000166451 CDS Human protein_coding chr16:81053845 chr16:81053856 nonsynonymous SNV 0.000 0 32 hm5C_associated_SNPs_42878 0 0 1 0 1 CENPN chr16:81053881 5'GT 81053881 Upstream 26bp
chr11 73588106 73588106 1 + G A UCEC 73588109 + 73588089 73588129 41 AGAGCGACTGGGCGCAAGCCCTCAGGTGAATCCAGGCCCAG AGAGCGACTGGGCGCAAACCCTCAGGTGAATCCAGGCCCAG < 41bp 1 0.749965959626844 1 0.34308248758316 experiment 0.500068080746313 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAAF1 ENSG00000175575 CDS Human protein_coding chr11:73588109 chr11:73588106 nonsynonymous SNV 0.440 1 18 hm5C_associated_SNPs_42879 0 0 1 1 1 PAAF1 chr11:73588113 5'GT 73588113 Upstream 8bp
chr12 95877001 95877001 1 + C T UCEC 95877015 + 95876995 95877035 41 AGATGGCGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAA AGATGGTGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAA < 41bp 1 0.332176080976245 1 0.312281757593155 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout METAP2 ENSG00000111142 CDS Human protein_coding chr12:95877015 chr12:95877001 synonymous SNV . 0 7 hm5C_associated_SNPs_42881 0 0 1 1 2 METAP2 chr12:95876991 3'AG 95876991 Downstream 11bp
chr12 95877001 95877001 1 + C T UCEC 95877015 + 95876995 95877035 41 AGATGGCGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAA AGATGGTGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAA < 41bp 1 0.332176080976245 1 0.312281757593155 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout METAP2 ENSG00000111142 CDS Human protein_coding chr12:95877015 chr12:95877001 synonymous SNV . 0 7 hm5C_associated_SNPs_42881 0 0 1 1 2 METAP2 chr12:95877056 5'GT 95877056 Upstream 56bp
chr12 109604766 109604766 1 + A G UCEC 109604784 + 109604764 109604804 41 TCACACGCTTTGGGGGGGATCGGGTCATCGAGAAGGTACAG TCGCACGCTTTGGGGGGGATCGGGTCATCGAGAAGGTACAG < 41bp 1 0.539434989391666 1 0.738179445266724 experiment 0.921130021216668 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109604784 chr12:109604766 nonsynonymous SNV 0.975 2 3 hm5C_associated_SNPs_42882 0 0 1 0 1 ACACB chr12:109604798 5'GT 109604798 Upstream 33bp
chr19 54969675 54969675 1 + G A UCEC 54969680 + 54969660 54969700 41 GATCGGGAGCGCAAGGTCGCCCTCAAGGCCATGATCAAAAC GATCGGGAGCGCAAGATCGCCCTCAAGGCCATGATCAAAAC < 41bp 1 0.127146863038536 1 0.16665518283844 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54969680 chr19:54969675 nonsynonymous SNV 0.997 0 16 hm5C_associated_SNPs_42883 0 0 1 0 1 LENG8 chr19:54969700 5'GT 54969700 Upstream 26bp
chr16 88098880 88098880 1 + A G UCEC 88098888 + 88098868 88098908 41 TCCAGCTTCTAGAGGCCACCCGCATCCCCTGCCTCCTGGCC TCCAGCTTCTAGGGGCCACCCGCATCCCCTGCCTCCTGGCC < 41bp 1 0.303780228746504 1 0.216259509325027 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BANP ENSG00000172530 CDS Human protein_coding chr16:88098888 chr16:88098880 nonsynonymous SNV 0.913 0 13 hm5C_associated_SNPs_42884 0 0 0 0 2 BANP chr16:88098873 3'AG 88098873 Downstream 8bp
chr16 88098880 88098880 1 + A G UCEC 88098888 + 88098868 88098908 41 TCCAGCTTCTAGAGGCCACCCGCATCCCCTGCCTCCTGGCC TCCAGCTTCTAGGGGCCACCCGCATCCCCTGCCTCCTGGCC < 41bp 1 0.303780228746504 1 0.216259509325027 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BANP ENSG00000172530 CDS Human protein_coding chr16:88098888 chr16:88098880 nonsynonymous SNV 0.913 0 13 hm5C_associated_SNPs_42884 0 0 0 0 2 BANP chr16:88098938 5'GT 88098938 Upstream 59bp
chr8 22054827 22054827 1 + T C UCEC 22054839 + 22054819 22054859 41 TTCTGTGGTTCTGAGAAGCCCGAGGTCATCACCTCCCAGTA TTCTGTGGCTCTGAGAAGCCCGAGGTCATCACCTCCCAGTA < 41bp 1 0.736412684688546 1 0.835934221744537 experiment 0.527174630622908 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22054839 chr8:22054827 synonymous SNV . 0 9 hm5C_associated_SNPs_42885 0 0 1 0 1 BMP1 chr8:22054753 3'AG 22054753 Downstream 75bp
chr16 1825324 1825324 1 + A G UCEC 1825308 + 1825288 1825328 41 GCGGGGAGGAATGGTCACCTCTGCTCAGGTCTCGCCAGCAC GCGGGGAGGAATGGTCACCTCTGCTCAGGTCTCGCCGGCAC < 41bp 1 0.792802540466891 1 0.23536741733551 experiment 0.414394919066218 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EME2 ENSG00000197774 CDS Human protein_coding chr16:1825308 chr16:1825324 nonsynonymous SNV 0.858 1 37 hm5C_associated_SNPs_42888 0 0 1 0 3 EME2 chr16:1825240 3'AG 1825240 Downstream 85bp
chr16 1825324 1825324 1 + A G UCEC 1825308 + 1825288 1825328 41 GCGGGGAGGAATGGTCACCTCTGCTCAGGTCTCGCCAGCAC GCGGGGAGGAATGGTCACCTCTGCTCAGGTCTCGCCGGCAC < 41bp 1 0.792802540466891 1 0.23536741733551 experiment 0.414394919066218 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EME2 ENSG00000197774 CDS Human protein_coding chr16:1825308 chr16:1825324 nonsynonymous SNV 0.858 1 37 hm5C_associated_SNPs_42888 0 0 1 0 3 EME2 chr16:1825316 3'AG 1825316 Downstream 9bp
chr16 1825324 1825324 1 + A G UCEC 1825308 + 1825288 1825328 41 GCGGGGAGGAATGGTCACCTCTGCTCAGGTCTCGCCAGCAC GCGGGGAGGAATGGTCACCTCTGCTCAGGTCTCGCCGGCAC < 41bp 1 0.792802540466891 1 0.23536741733551 experiment 0.414394919066218 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EME2 ENSG00000197774 CDS Human protein_coding chr16:1825308 chr16:1825324 nonsynonymous SNV 0.858 1 37 hm5C_associated_SNPs_42888 0 0 1 0 3 EME2 chr16:1825409 5'GT 1825409 Upstream 86bp
chr6 145149981 145149981 1 + A G UCEC 145149979 + 145149959 145149999 41 TCTCACTGATAGCAGCTCCACCACAGGAAGTGTGTAAGTAA TCTCACTGATAGCAGCTCCACCGCAGGAAGTGTGTAAGTAA < 41bp 1 0.187256001790107 1 0.203832030296326 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:145149979 chr6:145149981 nonsynonymous SNV 0.946 2 23 hm5C_associated_SNPs_42889 0 0 1 0 2 UTRN chr6:145149926 3'AG 145149926 Downstream 56bp
chr6 145149981 145149981 1 + A G UCEC 145149979 + 145149959 145149999 41 TCTCACTGATAGCAGCTCCACCACAGGAAGTGTGTAAGTAA TCTCACTGATAGCAGCTCCACCGCAGGAAGTGTGTAAGTAA < 41bp 1 0.187256001790107 1 0.203832030296326 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:145149979 chr6:145149981 nonsynonymous SNV 0.946 2 23 hm5C_associated_SNPs_42889 0 0 1 0 2 UTRN chr6:145149991 5'GT 145149991 Upstream 11bp
chr12 58109727 58109727 1 + A G UCEC 58109718 + 58109698 58109738 41 CTGTCACCCTTCCCTACAGCCTGAGGAGTACATGGCCTACG CTGTCACCCTTCCCTACAGCCTGAGGAGTGCATGGCCTACG < 41bp 1 0.712179818543154 1 0.43996450304985 experiment 0.575640362913692 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OS9 ENSG00000135506 CDS Human protein_coding chr12:58109718 chr12:58109727 nonsynonymous SNV 0.997 4 30 hm5C_associated_SNPs_42891 0 0 1 0 1 OS9 chr12:58109753 5'GT 58109753 Upstream 27bp
chr22 32881154 32881154 1 + A G UCEC 32881149 + 32881129 32881169 41 TCCTCTCTGCGAGGGCAGCTCCGCTACTCTCACCTGTGTGC TCCTCTCTGCGAGGGCAGCTCCGCTGCTCTCACCTGTGTGC < 41bp 1 0.547775651399593 1 0.13800510764122 experiment 0.904448697200814 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32881149 chr22:32881154 nonsynonymous SNV 0.148 0 26 hm5C_associated_SNPs_42892 1 0 1 0 2 FBXO7 chr22:32881055 3'AG 32881055 Downstream 100bp
chr22 32881154 32881154 1 + A G UCEC 32881149 + 32881129 32881169 41 TCCTCTCTGCGAGGGCAGCTCCGCTACTCTCACCTGTGTGC TCCTCTCTGCGAGGGCAGCTCCGCTGCTCTCACCTGTGTGC < 41bp 1 0.547775651399593 1 0.13800510764122 experiment 0.904448697200814 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32881149 chr22:32881154 nonsynonymous SNV 0.148 0 26 hm5C_associated_SNPs_42892 1 0 1 0 2 FBXO7 chr22:32881196 5'GT 32881196 Upstream 43bp
chr22 39078397 39078397 1 + G A UCEC 39078388 + 39078368 39078408 41 AGATGTTTCCGGAGAGGGTCCGGTCCGCGGCCGGAGCCACT AGATGTTTCCGGAGAGGGTCCGGTCCGCGACCGGAGCCACT < 41bp 1 0.344554108256391 1 0.335571259260178 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078388 chr22:39078397 nonsynonymous SNV 0.961 1 30 hm5C_associated_SNPs_42897 0 0 1 0 2 TOMM22 chr22:39078328 3'AG 39078328 Downstream 70bp
chr22 39078397 39078397 1 + G A UCEC 39078388 + 39078368 39078408 41 AGATGTTTCCGGAGAGGGTCCGGTCCGCGGCCGGAGCCACT AGATGTTTCCGGAGAGGGTCCGGTCCGCGACCGGAGCCACT < 41bp 1 0.344554108256391 1 0.335571259260178 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078388 chr22:39078397 nonsynonymous SNV 0.961 1 30 hm5C_associated_SNPs_42897 0 0 1 0 2 TOMM22 chr22:39078446 5'GT 39078446 Upstream 50bp
chr2 200824529 200824529 1 + A G UCEC 200824514 + 200824494 200824534 41 AGAAAAGGTTACTTCACTACCTGACAACCATAAAAATGCCC AGAAAAGGTTACTTCACTACCTGACAACCATAAAAGTGCCC < 41bp 1 0.218625588336161 1 0.153344243764877 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200824514 chr2:200824529 nonsynonymous SNV 1.000 0 36 hm5C_associated_SNPs_42898 0 0 1 0 2 MAIP1 chr2:200824477 3'AG 200824477 Downstream 53bp
chr2 200824529 200824529 1 + A G UCEC 200824514 + 200824494 200824534 41 AGAAAAGGTTACTTCACTACCTGACAACCATAAAAATGCCC AGAAAAGGTTACTTCACTACCTGACAACCATAAAAGTGCCC < 41bp 1 0.218625588336161 1 0.153344243764877 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200824514 chr2:200824529 nonsynonymous SNV 1.000 0 36 hm5C_associated_SNPs_42898 0 0 1 0 2 MAIP1 chr2:200824603 5'GT 200824603 Upstream 75bp
chr5 21497203 21497203 1 + A G UCEC 21497215 + 21497195 21497235 41 TGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAAC TGGAGTTGGTTCAGCTGCAGCTGGCCGCCCAGTTTGAGAAC < 41bp 1 0.332576666178374 1 0.763272941112518 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21497215 chr5:21497203 . . 0 9 hm5C_associated_SNPs_42899 0 0 1 0 1 GUSBP1 chr5:21497131 3'AG 21497131 Downstream 73bp
chr16 14978310 14978310 1 + A G UCEC 14978325 + 14978305 14978345 41 TGATCACTTCCTCTGAATACCTTCCTACATTATGGGTAAGT TGATCGCTTCCTCTGAATACCTTCCTACATTATGGGTAAGT < 41bp 1 0.034286146559342 1 0.0270529091358185 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14978325 chr16:14978310 nonsynonymous SNV 0.998 4 6 hm5C_associated_SNPs_42900 0 0 1 0 2 NOMO1 chr16:14978229 3'AG 14978229 Downstream 82bp
chr16 14978310 14978310 1 + A G UCEC 14978325 + 14978305 14978345 41 TGATCACTTCCTCTGAATACCTTCCTACATTATGGGTAAGT TGATCGCTTCCTCTGAATACCTTCCTACATTATGGGTAAGT < 41bp 1 0.034286146559342 1 0.0270529091358185 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14978325 chr16:14978310 nonsynonymous SNV 0.998 4 6 hm5C_associated_SNPs_42900 0 0 1 0 2 NOMO1 chr16:14978339 5'GT 14978339 Upstream 30bp
chr16 14978310 14978310 1 + A G UCEC 14978328 + 14978308 14978348 41 TCACTTCCTCTGAATACCTTCCTACATTATGGGTAAGTCCA TCGCTTCCTCTGAATACCTTCCTACATTATGGGTAAGTCCA < 41bp 1 0.00884978982566549 1 0.391550302505493 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14978328 chr16:14978310 nonsynonymous SNV 0.998 4 3 hm5C_associated_SNPs_42901 0 0 1 0 2 NOMO1 chr16:14978229 3'AG 14978229 Downstream 82bp
chr16 14978310 14978310 1 + A G UCEC 14978328 + 14978308 14978348 41 TCACTTCCTCTGAATACCTTCCTACATTATGGGTAAGTCCA TCGCTTCCTCTGAATACCTTCCTACATTATGGGTAAGTCCA < 41bp 1 0.00884978982566549 1 0.391550302505493 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14978328 chr16:14978310 nonsynonymous SNV 0.998 4 3 hm5C_associated_SNPs_42901 0 0 1 0 2 NOMO1 chr16:14978339 5'GT 14978339 Upstream 30bp
chr19 11105622 11105622 1 + G A UCEC 11105627 + 11105607 11105647 41 ATGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACGAGCGG ATGCCAACACGGAGCAGGAGCAGAAGAAAGAGAACGAGCGG < 41bp 1 0.627182896981921 1 0.691103219985962 experiment 0.745634206036158 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11105627 chr19:11105622 nonsynonymous SNV 0.995 4 16 hm5C_associated_SNPs_42902 0 0 1 0 1 SMARCA4 chr19:11105677 5'GT 11105677 Upstream 56bp
chr2 242688328 242688328 1 + G A UCEC 242688316 + 242688296 242688336 41 CGCCTGTGGTCCTGGGAGCCCGAGGCCAGCCCGGCTGCCGC CGCCTGTGGTCCTGGGAGCCCGAGGCCAGCCCAGCTGCCGC < 41bp 1 0.783533287475821 1 0.936702489852905 experiment 0.432933425048358 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242688316 chr2:242688328 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_42903 0 0 1 0 3 D2HGDH chr2:242688280 3'AG 242688280 Downstream 49bp
chr2 242688328 242688328 1 + G A UCEC 242688316 + 242688296 242688336 41 CGCCTGTGGTCCTGGGAGCCCGAGGCCAGCCCGGCTGCCGC CGCCTGTGGTCCTGGGAGCCCGAGGCCAGCCCAGCTGCCGC < 41bp 1 0.783533287475821 1 0.936702489852905 experiment 0.432933425048358 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242688316 chr2:242688328 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_42903 0 0 1 0 3 D2HGDH chr2:242688357 5'GT 242688357 Upstream 30bp
chr2 242688328 242688328 1 + G A UCEC 242688316 + 242688296 242688336 41 CGCCTGTGGTCCTGGGAGCCCGAGGCCAGCCCGGCTGCCGC CGCCTGTGGTCCTGGGAGCCCGAGGCCAGCCCAGCTGCCGC < 41bp 1 0.783533287475821 1 0.936702489852905 experiment 0.432933425048358 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242688316 chr2:242688328 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_42903 0 0 1 0 3 D2HGDH chr2:242688423 5'GT 242688423 Upstream 96bp
chr1 228451884 228451884 1 + T C UCEC 228451881 + 228451861 228451901 41 GTGCAGGCTGAGGCGGGGACCAGTGCCACGCTGAGCTGCGA GTGCAGGCTGAGGCGGGGACCAGCGCCACGCTGAGCTGCGA < 41bp 1 0.159122674920681 1 0.860830664634705 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228451881 chr1:228451884 synonymous SNV . 0 24 hm5C_associated_SNPs_42904 0 0 0 0 1 OBSCN chr1:228451817 3'AG 228451817 Downstream 68bp
chr18 29116357 29116357 1 + G A UCEC 29116350 + 29116330 29116370 41 GTTTCTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAA GTTTCTCCGTCATTGACAAACCACCTGACATGGCAGAAAAA < 41bp 1 0.106693793925235 1 0.173202782869339 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116350 chr18:29116357 nonsynonymous SNV 0.825 3 28 hm5C_associated_SNPs_42905 0 0 1 0 1 DSG2 chr18:29116392 5'GT 29116392 Upstream 36bp
chr18 29116357 29116357 1 + G A UCEC 29116354 + 29116334 29116374 41 CTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAATGGA CTCCGTCATTGACAAACCACCTGACATGGCAGAAAAATGGA < 41bp 1 0.231699878071805 1 0.14175420999527 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116354 chr18:29116357 nonsynonymous SNV 0.825 3 24 hm5C_associated_SNPs_42906 0 0 1 0 1 DSG2 chr18:29116392 5'GT 29116392 Upstream 36bp
chr18 29116357 29116357 1 + G A UCEC 29116363 + 29116343 29116383 41 TGACAAACCACCTGGCATGGCAGAAAAATGGAAAATAGCAC TGACAAACCACCTGACATGGCAGAAAAATGGAAAATAGCAC < 41bp 1 0.568172152591567 1 0.292733013629913 experiment 0.863655694816866 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116363 chr18:29116357 nonsynonymous SNV 0.825 3 15 hm5C_associated_SNPs_42907 0 0 1 0 1 DSG2 chr18:29116392 5'GT 29116392 Upstream 36bp
chr2 86947842 86947842 1 + T C UCEC 86947846 + 86947826 86947866 41 GAAGGTGCTGCACAAGTTCTCAGGCTACGGGCAGCTGTGCG GAAGGTGCTGCACAAGCTCTCAGGCTACGGGCAGCTGTGCG < 41bp 1 0.724075822009828 1 0.946384727954865 experiment 0.551848355980345 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control RMND5A ENSG00000153561 CDS Human protein_coding chr2:86947846 chr2:86947842 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_42909 0 0 1 0 1 RMND5A chr2:86947932 5'GT 86947932 Upstream 91bp
chr3 97661200 97661200 1 + C T UCEC 97661188 + 97661168 97661208 41 CACCTGGAGCTAAAGTAGCTCTATGGACTGAACATGGGCAA CACCTGGAGCTAAAGTAGCTCTATGGACTGAATATGGGCAA < 41bp 1 0.207544321647576 1 0.114064633846283 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRYBG3 ENSG00000080200 CDS Human protein_coding chr3:97661188 chr3:97661200 nonsynonymous SNV 0.748 3 33 hm5C_associated_SNPs_42910 0 0 1 0 2 CRYBG3 chr3:97661128 3'AG 97661128 Downstream 73bp
chr3 97661200 97661200 1 + C T UCEC 97661188 + 97661168 97661208 41 CACCTGGAGCTAAAGTAGCTCTATGGACTGAACATGGGCAA CACCTGGAGCTAAAGTAGCTCTATGGACTGAATATGGGCAA < 41bp 1 0.207544321647576 1 0.114064633846283 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRYBG3 ENSG00000080200 CDS Human protein_coding chr3:97661188 chr3:97661200 nonsynonymous SNV 0.748 3 33 hm5C_associated_SNPs_42910 0 0 1 0 2 CRYBG3 chr3:97661287 5'GT 97661287 Upstream 88bp
chr16 57171172 57171172 1 + C T UCEC 57171175 + 57171155 57171195 41 CCGGTTTGCGGCCCAGGCCACACAACAGCGGACGGCCACGG CCGGTTTGCGGCCCAGGTCACACAACAGCGGACGGCCACGG < 41bp 1 0.715182455890184 1 0.37892147898674 experiment 0.569635088219632 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57171175 chr16:57171172 nonsynonymous SNV 0.989 3 18 hm5C_associated_SNPs_42911 0 0 1 0 1 CPNE2 chr16:57171194 5'GT 57171194 Upstream 23bp
chr15 22940741 22940741 1 + T C UCEC 22940756 + 22940736 22940776 41 GCACATCCTCCGGCAGCAGCCCTCAGTACAACATCTGCGAG GCACACCCTCCGGCAGCAGCCCTCAGTACAACATCTGCGAG < 41bp 1 0.359420106404733 1 0.381530851125717 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22940756 chr15:22940741 nonsynonymous SNV . 0 6 hm5C_associated_SNPs_42912 0 0 1 0 1 CYFIP1 chr15:22940728 3'AG 22940728 Downstream 14bp
chr10 118306848 118306848 1 + A G UCEC 118306831 + 118306811 118306851 41 GAAGTTTGCTACGAAAGACTCGGCTGCTTCAGTGATGACTC GAAGTTTGCTACGAAAGACTCGGCTGCTTCAGTGATGGCTC < 41bp 1 0.709496004552678 1 0.35021835565567 experiment 0.581007990894645 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306831 chr10:118306848 nonsynonymous SNV 0.773 1 38 hm5C_associated_SNPs_42914 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 43bp
chr10 118306848 118306848 1 + A G UCEC 118306849 + 118306829 118306869 41 CTCGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTAC CTCGGCTGCTTCAGTGATGGCTCCCCATGGTCAGGAATTAC < 41bp 1 0.276104659274162 1 0.0420912206172943 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306849 chr10:118306848 nonsynonymous SNV 0.773 1 20 hm5C_associated_SNPs_42915 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 43bp
chr10 118306848 118306848 1 + A G UCEC 118306851 + 118306831 118306871 41 CGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGG CGGCTGCTTCAGTGATGGCTCCCCATGGTCAGGAATTACGG < 41bp 1 0.606455185390517 1 0.144171953201294 experiment 0.787089629218966 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306851 chr10:118306848 nonsynonymous SNV 0.773 1 18 hm5C_associated_SNPs_42916 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 43bp
chr10 118306848 118306848 1 + A G UCEC 118306853 + 118306833 118306873 41 GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAA GCTGCTTCAGTGATGGCTCCCCATGGTCAGGAATTACGGAA < 41bp 1 0.282577743225152 1 0.304024934768677 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306853 chr10:118306848 nonsynonymous SNV 0.773 1 16 hm5C_associated_SNPs_42917 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 43bp
chr10 118306848 118306848 1 + A G UCEC 118306854 + 118306834 118306874 41 CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAAA CTGCTTCAGTGATGGCTCCCCATGGTCAGGAATTACGGAAA < 41bp 1 0.551860651653391 1 0.45896303653717 experiment 0.896278696693217 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306854 chr10:118306848 nonsynonymous SNV 0.773 1 15 hm5C_associated_SNPs_42918 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 43bp
chr1 70700415 70700415 1 + A G UCEC 70700412 + 70700392 70700432 41 CACTGGCTGCTTTGGGGGCTCCTACTCTTGATCCTGCCCTT CACTGGCTGCTTTGGGGGCTCCTGCTCTTGATCCTGCCCTT < 41bp 1 0.427488997431395 1 0.197558969259262 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70700412 chr1:70700415 nonsynonymous SNV 0.994 0 24 hm5C_associated_SNPs_42919 0 0 1 0 2 SRSF11 chr1:70700379 3'AG 70700379 Downstream 37bp
chr1 70700415 70700415 1 + A G UCEC 70700412 + 70700392 70700432 41 CACTGGCTGCTTTGGGGGCTCCTACTCTTGATCCTGCCCTT CACTGGCTGCTTTGGGGGCTCCTGCTCTTGATCCTGCCCTT < 41bp 1 0.427488997431395 1 0.197558969259262 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70700412 chr1:70700415 nonsynonymous SNV 0.994 0 24 hm5C_associated_SNPs_42919 0 0 1 0 2 SRSF11 chr1:70700471 5'GT 70700471 Upstream 57bp
chr22 41742209 41742209 1 + C T UCEC 41742194 + 41742174 41742214 41 CTGAAGGAGCACCAGGGCATCTTCACCTTCCTCTGCGAGGT CTGAAGGAGCACCAGGGCATCTTCACCTTCCTCTGTGAGGT < 41bp 1 0.290688308388627 1 0.154329657554626 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41742194 chr22:41742209 synonymous SNV . 0 36 hm5C_associated_SNPs_42920 0 0 1 0 1 ZC3H7B chr22:41742212 5'GT 41742212 Upstream 4bp
chr7 100204247 100204247 1 + G T UCEC 100204239 + 100204219 100204259 41 TCCGGAGAAAACAGAGGAATCTCCTTCAGCCCCTGGTGAGT TCCGGAGAAAACAGAGGAATCTCCTTCATCCCCTGGTGAGT < 41bp 1 0.33288592280398 1 0.11872586607933 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100204239 chr7:100204247 nonsynonymous SNV 0.001 0 29 hm5C_associated_SNPs_42922 0 0 1 0 1 PCOLCE chr7:100204253 5'GT 100204253 Upstream 7bp
chr7 55270297 55270297 1 + G A UCEC 55270305 + 55270285 55270325 41 GACAGCATAGACGACACCTTCCTCCCAGTGCCTGGTGAGTG GACAGCATAGACAACACCTTCCTCCCAGTGCCTGGTGAGTG < 41bp 1 0.0441989786480863 1 0.0338515937328339 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55270305 chr7:55270297 nonsynonymous SNV 0.943 2 13 hm5C_associated_SNPs_42923 0 0 1 0 2 EGFR chr7:55270210 3'AG 55270210 Downstream 88bp
chr7 55270297 55270297 1 + G A UCEC 55270305 + 55270285 55270325 41 GACAGCATAGACGACACCTTCCTCCCAGTGCCTGGTGAGTG GACAGCATAGACAACACCTTCCTCCCAGTGCCTGGTGAGTG < 41bp 1 0.0441989786480863 1 0.0338515937328339 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55270305 chr7:55270297 nonsynonymous SNV 0.943 2 13 hm5C_associated_SNPs_42923 0 0 1 0 2 EGFR chr7:55270318 5'GT 55270318 Upstream 22bp
chr9 91041450 91041450 1 + G A UCEC 91041433 + 91041413 91041453 41 ACCCTAGTCCAGCAGCTCCGCTGCTCACTTAAATACAGATG ACCCTAGTCCAGCAGCTCCGCTGCTCACTTAAATACAAATG < 41bp 1 0.455721350230475 1 0.373258322477341 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPIN1 ENSG00000106723 UTR5 Human protein_coding chr9:91041433 chr9:91041450 . . 0 38 hm5C_associated_SNPs_42924 0 0 1 0 1 SPIN1 chr9:91041506 5'GT 91041506 Upstream 57bp
chr7 99956371 99956371 1 + C T UCEC 99956353 + 99956333 99956373 41 CCAAGCTACCTTTATGGGGTCACTCAACCAAAACACCTCTC CCAAGCTACCTTTATGGGGTCACTCAACCAAAACACCTTTC < 41bp 1 0.0732241739459779 1 0.0205260813236237 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PILRB ENSG00000121716 CDS Human protein_coding chr7:99956353 chr7:99956371 synonymous SNV . 0 39 hm5C_associated_SNPs_42925 0 0 0 1 1 PILRB chr7:99956313 3'AG 99956313 Downstream 59bp
chr2 71297694 71297694 1 + A C UCEC 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGCTGGACTGAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.597970913841022 1 0.27280205488205 experiment 0.804058172317956 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297694 nonsynonymous SNV 1.000 0 11 hm5C_associated_SNPs_42927 0 0 1 2 2 NAGK chr2:71297632 3'AG 71297632 Downstream 63bp
chr2 71297694 71297694 1 + A C UCEC 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGCTGGACTGAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.597970913841022 1 0.27280205488205 experiment 0.804058172317956 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297694 nonsynonymous SNV 1.000 0 11 hm5C_associated_SNPs_42927 0 0 1 2 2 NAGK chr2:71297716 5'GT 71297716 Upstream 23bp
chr17 38142911 38142911 1 + C A UCEC 38142926 + 38142906 38142946 41 GAAGCCTATCTCCAACTCCTCGTGGTCATCTTCATGATGAA GAAGCATATCTCCAACTCCTCGTGGTCATCTTCATGATGAA < 41bp 1 0.415030859499511 1 0.196974486112595 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38142926 chr17:38142911 nonsynonymous SNV . 0 6 hm5C_associated_SNPs_42928 0 0 1 0 2 PSMD3 chr17:38142828 3'AG 38142828 Downstream 84bp
chr17 38142911 38142911 1 + C A UCEC 38142926 + 38142906 38142946 41 GAAGCCTATCTCCAACTCCTCGTGGTCATCTTCATGATGAA GAAGCATATCTCCAACTCCTCGTGGTCATCTTCATGATGAA < 41bp 1 0.415030859499511 1 0.196974486112595 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38142926 chr17:38142911 nonsynonymous SNV . 0 6 hm5C_associated_SNPs_42928 0 0 1 0 2 PSMD3 chr17:38142965 5'GT 38142965 Upstream 55bp
chr1 220964953 220964953 1 + G T UCEC 220964933 + 220964913 220964953 41 GCGATGGTGACACCCTGACTCTCAGTGCAGCCTACACAAAG GCGATGGTGACACCCTGACTCTCAGTGCAGCCTACACAAAT < 41bp 1 0.690157095877032 1 0.34901151061058 experiment 0.619685808245935 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC1 ENSG00000186205 CDS Human protein_coding chr1:220964933 chr1:220964953 nonsynonymous SNV 0.994 0 41 hm5C_associated_SNPs_42929 0 0 1 0 1 MARC1 chr1:220965006 5'GT 220965006 Upstream 54bp
chr4 169632781 169632781 1 + C T UCEC 169632772 + 169632752 169632792 41 TACGAGTCAATGGGAGAATCCAACAATGACCACTTCCAACA TACGAGTCAATGGGAGAATCCAACAATGATCACTTCCAACA < 41bp 1 0.57985038268784 1 0.148322820663452 experiment 0.84029923462432 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PALLD ENSG00000129116 CDS Human protein_coding chr4:169632772 chr4:169632781 synonymous SNV . 0 30 hm5C_associated_SNPs_42930 0 0 0 0 1 PALLD chr4:169632732 3'AG 169632732 Downstream 50bp
chrX 12838855 12838855 1 + T C UCEC 12838861 + 12838841 12838881 41 AAATAATGCCGCCTTTGAGGCTGTTGTCGTCACAAACACAA AAATAATGCCGCCTCTGAGGCTGTTGTCGTCACAAACACAA < 41bp 1 0.32427362800053 1 0.109329283237457 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12838861 chrX:12838855 nonsynonymous SNV 0.993 1 15 hm5C_associated_SNPs_42931 0 0 1 0 2 PRPS2 chrX:12838763 3'AG 12838763 Downstream 93bp
chrX 12838855 12838855 1 + T C UCEC 12838861 + 12838841 12838881 41 AAATAATGCCGCCTTTGAGGCTGTTGTCGTCACAAACACAA AAATAATGCCGCCTCTGAGGCTGTTGTCGTCACAAACACAA < 41bp 1 0.32427362800053 1 0.109329283237457 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12838861 chrX:12838855 nonsynonymous SNV 0.993 1 15 hm5C_associated_SNPs_42931 0 0 1 0 2 PRPS2 chrX:12838922 5'GT 12838922 Upstream 68bp
chr2 32656077 32656077 1 + G T UCEC 32656070 + 32656050 32656090 41 TAGAAGTTCAACAAGAACAGCAGCAAAGGAGGCATCCTCAA TAGAAGTTCAACAAGAACAGCAGCAAATGAGGCATCCTCAA < 41bp 1 0.274143737729467 1 0.374160945415497 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32656070 chr2:32656077 nonsynonymous SNV 0.997 5 28 hm5C_associated_SNPs_42932 0 0 1 0 1 BIRC6 chr2:32656158 5'GT 32656158 Upstream 82bp
chrX 70356853 70356853 1 + A G UCEC 70356839 + 70356819 70356859 41 CACCTTAACTACAGGCAAGGCTCCATAGGCCTGTACACCCA CACCTTAACTACAGGCAAGGCTCCATAGGCCTGTGCACCCA < 41bp 1 0.750753052002313 1 0.975857138633728 experiment 0.498493895995374 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70356839 chrX:70356853 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_42933 0 0 1 0 1 MED12 chrX:70356879 5'GT 70356879 Upstream 27bp
chr3 99509760 99509760 1 + G T UCEC 99509758 + 99509738 99509778 41 GCAAGGAGATGCCCCACTTGCAGTATGGCAAAGAGTATCCA GCAAGGAGATGCCCCACTTGCATTATGGCAAAGAGTATCCA < 41bp 1 0.311490425052998 1 0.11531013250351 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL8A1 ENSG00000144810 CDS Human protein_coding chr3:99509758 chr3:99509760 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_42934 0 0 1 0 1 COL8A1 chr3:99509854 5'GT 99509854 Upstream 95bp
chr8 98837320 98837320 1 + G A UCEC 98837312 + 98837292 98837332 41 TTGATTAGCTGTGTTTGGAACTGCTACCGATACATCAATGG TTGATTAGCTGTGTTTGGAACTGCTACCAATACATCAATGG < 41bp 1 0.226957202487686 1 0.103724330663681 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAPTM4B ENSG00000104341 CDS Human protein_coding chr8:98837312 chr8:98837320 nonsynonymous SNV 0.977 4 29 hm5C_associated_SNPs_42935 0 0 1 0 1 LAPTM4B chr8:98837381 5'GT 98837381 Upstream 62bp
chr12 56331267 56331267 1 + C A UCEC 56331284 + 56331264 56331304 41 AGCCTGGCACTGTTTCAATCCTTTGAGACTGGTCACTGCTT AGCATGGCACTGTTTCAATCCTTTGAGACTGGTCACTGCTT < 41bp 1 0.224842118067275 1 0.0753671526908875 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56331284 chr12:56331267 nonsynonymous SNV 0.945 0 4 hm5C_associated_SNPs_42936 0 0 0 0 3 DGKA chr12:56331192 3'AG 56331192 Downstream 76bp
chr12 56331267 56331267 1 + C A UCEC 56331284 + 56331264 56331304 41 AGCCTGGCACTGTTTCAATCCTTTGAGACTGGTCACTGCTT AGCATGGCACTGTTTCAATCCTTTGAGACTGGTCACTGCTT < 41bp 1 0.224842118067275 1 0.0753671526908875 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56331284 chr12:56331267 nonsynonymous SNV 0.945 0 4 hm5C_associated_SNPs_42936 0 0 0 0 3 DGKA chr12:56331327 5'GT 56331327 Upstream 61bp
chr12 56331267 56331267 1 + C A UCEC 56331284 + 56331264 56331304 41 AGCCTGGCACTGTTTCAATCCTTTGAGACTGGTCACTGCTT AGCATGGCACTGTTTCAATCCTTTGAGACTGGTCACTGCTT < 41bp 1 0.224842118067275 1 0.0753671526908875 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56331284 chr12:56331267 nonsynonymous SNV 0.945 0 4 hm5C_associated_SNPs_42936 0 0 0 0 3 DGKA chr12:56331341 5'GT 56331341 Upstream 75bp
chr8 27514364 27514364 1 + C T UCEC 27514376 + 27514356 27514396 41 ACAAGAAGCTTGTGTTAATGCAGAAAAATCTCCAGGGCCTG ACAAGAAGTTTGTGTTAATGCAGAAAAATCTCCAGGGCCTG < 41bp 1 0.796290490339926 1 0.513480186462402 experiment 0.407419019320148 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SCARA3 ENSG00000168077 CDS Human protein_coding chr8:27514376 chr8:27514364 nonsynonymous SNV 0.998 2 9 hm5C_associated_SNPs_42937 0 0 0 0 2 SCARA3 chr8:27514299 3'AG 27514299 Downstream 66bp
chr8 27514364 27514364 1 + C T UCEC 27514376 + 27514356 27514396 41 ACAAGAAGCTTGTGTTAATGCAGAAAAATCTCCAGGGCCTG ACAAGAAGTTTGTGTTAATGCAGAAAAATCTCCAGGGCCTG < 41bp 1 0.796290490339926 1 0.513480186462402 experiment 0.407419019320148 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SCARA3 ENSG00000168077 CDS Human protein_coding chr8:27514376 chr8:27514364 nonsynonymous SNV 0.998 2 9 hm5C_associated_SNPs_42937 0 0 0 0 2 SCARA3 chr8:27514397 5'GT 27514397 Upstream 34bp
chr19 41078274 41078274 1 + G T UCEC 41078256 + 41078236 41078276 41 TCCTGCAGGACCCAGGATGGCAGTGAGTTTTTGCTCCAGGC TCCTGCAGGACCCAGGATGGCAGTGAGTTTTTGCTCCATGC < 41bp 1 0.222915405107124 1 0.0481716990470886 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41078256 chr19:41078274 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_42938 0 0 0 0 2 SPTBN4 chr19:41078244 3'AG 41078244 Downstream 31bp
chr19 41078274 41078274 1 + G T UCEC 41078256 + 41078236 41078276 41 TCCTGCAGGACCCAGGATGGCAGTGAGTTTTTGCTCCAGGC TCCTGCAGGACCCAGGATGGCAGTGAGTTTTTGCTCCATGC < 41bp 1 0.222915405107124 1 0.0481716990470886 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41078256 chr19:41078274 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_42938 0 0 0 0 2 SPTBN4 chr19:41078286 5'GT 41078286 Upstream 13bp
chr11 75279984 75279984 1 + G A UCEC 75279988 + 75279968 75280008 41 TCCGCTCCTCTCCCAGGCCTCTACAACTACTACGACGACGA TCCGCTCCTCTCCCAGACCTCTACAACTACTACGACGACGA < 41bp 1 0.597900610413911 1 0.677691340446472 experiment 0.804198779172177 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279988 chr11:75279984 nonsynonymous SNV 0.920 4 17 hm5C_associated_SNPs_42941 0 0 1 0 1 SERPINH1 chr11:75279984 3'AG 75279984 Downstream 1bp
chr1 36645662 36645662 1 + G T UCEC 36645659 + 36645639 36645679 41 AAGCTGTGGTGCAGTCCCCGCAGGTCACAGGTAGATCTCCT AAGCTGTGGTGCAGTCCCCGCAGTTCACAGGTAGATCTCCT < 41bp 1 0.107825642548726 1 0.790398716926575 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP7D1 ENSG00000116871 CDS Human protein_coding chr1:36645659 chr1:36645662 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_42942 0 0 0 0 1 MAP7D1 chr1:36645668 5'GT 36645668 Upstream 7bp
chr2 71297701 71297701 1 + G A UCEC 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGATGGACTAAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.627389898650434 1 0.273150742053986 experiment 0.745220202699132 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297701 synonymous SNV . 0 18 hm5C_associated_SNPs_42943 0 0 1 2 2 NAGK chr2:71297632 3'AG 71297632 Downstream 70bp
chr2 71297701 71297701 1 + G A UCEC 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGATGGACTAAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.627389898650434 1 0.273150742053986 experiment 0.745220202699132 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297701 synonymous SNV . 0 18 hm5C_associated_SNPs_42943 0 0 1 2 2 NAGK chr2:71297716 5'GT 71297716 Upstream 16bp
chr13 76430722 76430722 1 + C T UCEC 76430734 + 76430714 76430754 41 TACTGCAACGACTGCTATCTCAGATTCAAATGTAAGAGAGC TACTGCAATGACTGCTATCTCAGATTCAAATGTAAGAGAGC < 41bp 1 0.327781586369823 1 0.72634756565094 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76430734 chr13:76430722 nonsynonymous SNV 0.989 0 9 hm5C_associated_SNPs_42944 0 0 1 0 1 LMO7 chr13:76430744 5'GT 76430744 Upstream 23bp
chr2 46608807 46608807 1 + G T UCEC 46608795 + 46608775 46608815 41 AGTCCGGCCATGGTAGCCCTCTCCAACAAGCTGAAGCTGAA AGTCCGGCCATGGTAGCCCTCTCCAACAAGCTTAAGCTGAA < 41bp 1 0.734423747816975 1 0.975196599960327 experiment 0.53115250436605 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46608795 chr2:46608807 synonymous SNV . 0 33 hm5C_associated_SNPs_42946 0 0 0 0 2 EPAS1 chr2:46608735 3'AG 46608735 Downstream 73bp
chr2 46608807 46608807 1 + G T UCEC 46608795 + 46608775 46608815 41 AGTCCGGCCATGGTAGCCCTCTCCAACAAGCTGAAGCTGAA AGTCCGGCCATGGTAGCCCTCTCCAACAAGCTTAAGCTGAA < 41bp 1 0.734423747816975 1 0.975196599960327 experiment 0.53115250436605 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46608795 chr2:46608807 synonymous SNV . 0 33 hm5C_associated_SNPs_42946 0 0 0 0 2 EPAS1 chr2:46608861 5'GT 46608861 Upstream 55bp
chr4 123145740 123145740 1 + G A UCEC 123145724 + 123145704 123145744 41 GGTCTCCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG GGTCTCCAGCTGAGAGCACACGCTATGTTCTCAGCAAAAGG < 41bp 1 0.403037618529793 1 0.193276137113571 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123145724 chr4:123145740 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_42947 0 0 1 0 3 KIAA1109 chr4:123145653 3'AG 123145653 Downstream 88bp
chr4 123145740 123145740 1 + G A UCEC 123145724 + 123145704 123145744 41 GGTCTCCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG GGTCTCCAGCTGAGAGCACACGCTATGTTCTCAGCAAAAGG < 41bp 1 0.403037618529793 1 0.193276137113571 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123145724 chr4:123145740 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_42947 0 0 1 0 3 KIAA1109 chr4:123145656 3'AG 123145656 Downstream 85bp
chr4 123145740 123145740 1 + G A UCEC 123145724 + 123145704 123145744 41 GGTCTCCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG GGTCTCCAGCTGAGAGCACACGCTATGTTCTCAGCAAAAGG < 41bp 1 0.403037618529793 1 0.193276137113571 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123145724 chr4:123145740 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_42947 0 0 1 0 3 KIAA1109 chr4:123145832 5'GT 123145832 Upstream 93bp
chr6 31593321 31593321 1 + C T UCEC 31593332 + 31593312 31593352 41 GTCATGATCCCCGGGGTGGGCTACAGCCTTCAGGCCCACCC GTCATGATCTCCGGGGTGGGCTACAGCCTTCAGGCCCACCC < 41bp 1 0.664750008499754 1 0.473716467618942 experiment 0.670499983000491 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593332 chr6:31593321 nonsynonymous SNV 0.995 3 10 hm5C_associated_SNPs_42948 0 0 1 0 2 PRRC2A chr6:31593237 3'AG 31593237 Downstream 85bp
chr6 31593321 31593321 1 + C T UCEC 31593332 + 31593312 31593352 41 GTCATGATCCCCGGGGTGGGCTACAGCCTTCAGGCCCACCC GTCATGATCTCCGGGGTGGGCTACAGCCTTCAGGCCCACCC < 41bp 1 0.664750008499754 1 0.473716467618942 experiment 0.670499983000491 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593332 chr6:31593321 nonsynonymous SNV 0.995 3 10 hm5C_associated_SNPs_42948 0 0 1 0 2 PRRC2A chr6:31593388 5'GT 31593388 Upstream 68bp
chr5 153709235 153709235 1 + C T UCEC 153709248 + 153709228 153709268 41 CAGTGTGCTCAATCGCTCGCCTCCAGAGCTGGTCGCCGAGA CAGTGTGTTCAATCGCTCGCCTCCAGAGCTGGTCGCCGAGA < 41bp 1 0.679524714524936 1 0.92730724811554 experiment 0.640950570950129 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153709248 chr5:153709235 nonsynonymous SNV 0.973 2 8 hm5C_associated_SNPs_42949 0 0 0 0 1 GALNT10 chr5:153709298 5'GT 153709298 Upstream 64bp
chr17 48551156 48551156 1 + C T UCEC 48551147 + 48551127 48551167 41 AGGACTTCTTTCACACACACCCGAAGGTGCAGGAAGTGCAG AGGACTTCTTTCACACACACCCGAAGGTGTAGGAAGTGCAG < 41bp 1 0.362623186197135 1 0.113216400146484 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48551147 chr17:48551156 stopgain 1.000 0 30 hm5C_associated_SNPs_42951 0 0 1 0 1 ACSF2 chr17:48551167 5'GT 48551167 Upstream 12bp
chrX 133511660 133511660 1 + G A UCEC 133511658 + 133511638 133511678 41 TTTAAAAATCATGTCAAGCTCAGTTGAACAGAAAAAAGGGC TTTAAAAATCATGTCAAGCTCAATTGAACAGAAAAAAGGGC < 41bp 1 0.158304630136289 1 0.160099238157272 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHF6 ENSG00000156531 CDS Human protein_coding chrX:133511658 chrX:133511660 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_42952 0 0 1 0 1 PHF6 chrX:133511602 3'AG 133511602 Downstream 59bp
chr16 28950004 28950004 1 + G T UCEC 28950000 + 28949980 28950020 41 ATCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGA ATCCCCCGCCCAAGCAGGGTCCCATTCCTATGAGGATATGA < 41bp 1 0.0432335231645741 1 0.028704822063446 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950000 chr16:28950004 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_42953 0 0 0 0 3 CD19 chr16:28949994 3'AG 28949994 Downstream 11bp
chr16 28950004 28950004 1 + G T UCEC 28950000 + 28949980 28950020 41 ATCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGA ATCCCCCGCCCAAGCAGGGTCCCATTCCTATGAGGATATGA < 41bp 1 0.0432335231645741 1 0.028704822063446 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950000 chr16:28950004 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_42953 0 0 0 0 3 CD19 chr16:28949997 3'AG 28949997 Downstream 8bp
chr16 28950004 28950004 1 + G T UCEC 28950000 + 28949980 28950020 41 ATCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGA ATCCCCCGCCCAAGCAGGGTCCCATTCCTATGAGGATATGA < 41bp 1 0.0432335231645741 1 0.028704822063446 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950000 chr16:28950004 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_42953 0 0 0 0 3 CD19 chr16:28950089 5'GT 28950089 Upstream 86bp
chr16 28950004 28950004 1 + G T UCEC 28950001 + 28949981 28950021 41 TCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAG TCCCCCGCCCAAGCAGGGTCCCATTCCTATGAGGATATGAG < 41bp 1 0.00918522637330106 1 0.0257252156734467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950001 chr16:28950004 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_42954 0 0 0 0 3 CD19 chr16:28949994 3'AG 28949994 Downstream 11bp
chr16 28950004 28950004 1 + G T UCEC 28950001 + 28949981 28950021 41 TCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAG TCCCCCGCCCAAGCAGGGTCCCATTCCTATGAGGATATGAG < 41bp 1 0.00918522637330106 1 0.0257252156734467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950001 chr16:28950004 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_42954 0 0 0 0 3 CD19 chr16:28949997 3'AG 28949997 Downstream 8bp
chr16 28950004 28950004 1 + G T UCEC 28950001 + 28949981 28950021 41 TCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAG TCCCCCGCCCAAGCAGGGTCCCATTCCTATGAGGATATGAG < 41bp 1 0.00918522637330106 1 0.0257252156734467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950001 chr16:28950004 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_42954 0 0 0 0 3 CD19 chr16:28950089 5'GT 28950089 Upstream 86bp
chr16 28950004 28950004 1 + G T UCEC 28950002 + 28949982 28950022 41 CCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAGA CCCCCGCCCAAGCAGGGTCCCATTCCTATGAGGATATGAGA < 41bp 1 0.0192390517016027 1 0.0414834916591644 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950002 chr16:28950004 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_42955 0 0 0 0 3 CD19 chr16:28949994 3'AG 28949994 Downstream 11bp
chr16 28950004 28950004 1 + G T UCEC 28950002 + 28949982 28950022 41 CCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAGA CCCCCGCCCAAGCAGGGTCCCATTCCTATGAGGATATGAGA < 41bp 1 0.0192390517016027 1 0.0414834916591644 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950002 chr16:28950004 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_42955 0 0 0 0 3 CD19 chr16:28949997 3'AG 28949997 Downstream 8bp
chr16 28950004 28950004 1 + G T UCEC 28950002 + 28949982 28950022 41 CCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAGA CCCCCGCCCAAGCAGGGTCCCATTCCTATGAGGATATGAGA < 41bp 1 0.0192390517016027 1 0.0414834916591644 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950002 chr16:28950004 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_42955 0 0 0 0 3 CD19 chr16:28950089 5'GT 28950089 Upstream 86bp
chr5 149406363 149406363 1 + G A UCEC 149406376 + 149406356 149406396 41 CATGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAG CATGAGAACAATTTTGCCAGCCCCAGTTAACGTGGGGCGAG < 41bp 1 0.453697795164261 1 0.124432504177094 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406376 chr5:149406363 nonsynonymous SNV 0.999 3 8 hm5C_associated_SNPs_42956 0 0 1 0 2 HMGXB3 chr5:149406269 3'AG 149406269 Downstream 95bp
chr5 149406363 149406363 1 + G A UCEC 149406376 + 149406356 149406396 41 CATGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAG CATGAGAACAATTTTGCCAGCCCCAGTTAACGTGGGGCGAG < 41bp 1 0.453697795164261 1 0.124432504177094 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406376 chr5:149406363 nonsynonymous SNV 0.999 3 8 hm5C_associated_SNPs_42956 0 0 1 0 2 HMGXB3 chr5:149406444 5'GT 149406444 Upstream 82bp
chr5 149406363 149406363 1 + G A UCEC 149406377 + 149406357 149406397 41 ATGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGG ATGAGAACAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGG < 41bp 1 0.174886697061082 1 0.0779462158679962 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406377 chr5:149406363 nonsynonymous SNV 0.999 3 7 hm5C_associated_SNPs_42957 0 0 1 0 2 HMGXB3 chr5:149406269 3'AG 149406269 Downstream 95bp
chr5 149406363 149406363 1 + G A UCEC 149406377 + 149406357 149406397 41 ATGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGG ATGAGAACAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGG < 41bp 1 0.174886697061082 1 0.0779462158679962 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406377 chr5:149406363 nonsynonymous SNV 0.999 3 7 hm5C_associated_SNPs_42957 0 0 1 0 2 HMGXB3 chr5:149406444 5'GT 149406444 Upstream 82bp
chr5 149406363 149406363 1 + G A UCEC 149406378 + 149406358 149406398 41 TGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGGC TGAGAACAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGGC < 41bp 1 0.13333978792064 1 0.276255935430527 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406378 chr5:149406363 nonsynonymous SNV 0.999 3 6 hm5C_associated_SNPs_42958 0 0 1 0 2 HMGXB3 chr5:149406269 3'AG 149406269 Downstream 95bp
chr5 149406363 149406363 1 + G A UCEC 149406378 + 149406358 149406398 41 TGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGGC TGAGAACAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGGC < 41bp 1 0.13333978792064 1 0.276255935430527 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406378 chr5:149406363 nonsynonymous SNV 0.999 3 6 hm5C_associated_SNPs_42958 0 0 1 0 2 HMGXB3 chr5:149406444 5'GT 149406444 Upstream 82bp
chr5 149406363 149406363 1 + G A UCEC 149406379 + 149406359 149406399 41 GAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGGCA GAGAACAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGGCA < 41bp 1 0.127607316171142 1 0.425476908683777 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406379 chr5:149406363 nonsynonymous SNV 0.999 3 5 hm5C_associated_SNPs_42959 0 0 1 0 2 HMGXB3 chr5:149406269 3'AG 149406269 Downstream 95bp
chr5 149406363 149406363 1 + G A UCEC 149406379 + 149406359 149406399 41 GAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGGCA GAGAACAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGGCA < 41bp 1 0.127607316171142 1 0.425476908683777 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406379 chr5:149406363 nonsynonymous SNV 0.999 3 5 hm5C_associated_SNPs_42959 0 0 1 0 2 HMGXB3 chr5:149406444 5'GT 149406444 Upstream 82bp
chr7 101891761 101891761 1 + C T UCEC 101891755 + 101891735 101891775 41 GGGAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGC GGGAGTCAGGGCCAGGCGGGCGCCAGTGACTCACCCTCGGC < 41bp 1 0.693356395494251 1 0.557564914226532 experiment 0.613287209011498 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891755 chr7:101891761 synonymous SNV . 0 27 hm5C_associated_SNPs_42960 0 0 1 0 1 CUX1 chr7:101891692 3'AG 101891692 Downstream 70bp
chr7 101891761 101891761 1 + C T UCEC 101891757 + 101891737 101891777 41 GAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGCCC GAGTCAGGGCCAGGCGGGCGCCAGTGACTCACCCTCGGCCC < 41bp 1 0.409599772625869 1 0.377107411623001 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891757 chr7:101891761 synonymous SNV . 0 25 hm5C_associated_SNPs_42961 0 0 1 0 1 CUX1 chr7:101891692 3'AG 101891692 Downstream 70bp
chr7 101891761 101891761 1 + C T UCEC 101891758 + 101891738 101891778 41 AGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGCCCG AGTCAGGGCCAGGCGGGCGCCAGTGACTCACCCTCGGCCCG < 41bp 1 0.50210498813852 1 0.591745853424072 experiment 0.995790023722959 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891758 chr7:101891761 synonymous SNV . 0 24 hm5C_associated_SNPs_42962 0 0 1 0 1 CUX1 chr7:101891692 3'AG 101891692 Downstream 70bp
chr1 162039990 162039990 1 + A C UCEC 162040009 + 162039989 162040029 41 AACCTTGTGGACGATGGGCACGACCTGCGGATCCCCTTGCA ACCCTTGTGGACGATGGGCACGACCTGCGGATCCCCTTGCA < 41bp 1 0.367088229704225 1 0.468978017568588 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOS1AP ENSG00000198929 CDS Human protein_coding chr1:162040009 chr1:162039990 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_42963 0 0 1 0 1 NOS1AP chr1:162040072 5'GT 162040072 Upstream 83bp
chr13 113732714 113732714 1 + C T UCEC 113732702 + 113732682 113732722 41 CGGCGAGGCTCTGAGAACTCCAGCTCCGAGGGCGGTGCGCT CGGCGAGGCTCTGAGAACTCCAGCTCCGAGGGTGGTGCGCT < 41bp 1 0.324492745852953 1 0.303036868572235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113732702 chr13:113732714 synonymous SNV . 0 33 hm5C_associated_SNPs_42964 0 0 1 0 2 MCF2L chr13:113732677 3'AG 113732677 Downstream 38bp
chr13 113732714 113732714 1 + C T UCEC 113732702 + 113732682 113732722 41 CGGCGAGGCTCTGAGAACTCCAGCTCCGAGGGCGGTGCGCT CGGCGAGGCTCTGAGAACTCCAGCTCCGAGGGTGGTGCGCT < 41bp 1 0.324492745852953 1 0.303036868572235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113732702 chr13:113732714 synonymous SNV . 0 33 hm5C_associated_SNPs_42964 0 0 1 0 2 MCF2L chr13:113732750 5'GT 113732750 Upstream 37bp
chr1 75214444 75214444 1 + G A UCEC 75214439 + 75214419 75214459 41 TTTTATTTTCTTACAGCATTCCATGGCAATAGATTCTGGTT TTTTATTTTCTTACAGCATTCCATGACAATAGATTCTGGTT < 41bp 1 0.110797422867234 1 0.341788798570633 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TYW3 ENSG00000162623 CDS Human protein_coding chr1:75214439 chr1:75214444 nonsynonymous SNV 0.993 4 26 hm5C_associated_SNPs_42965 0 0 1 0 2 TYW3 chr1:75214435 3'AG 75214435 Downstream 10bp
chr1 75214444 75214444 1 + G A UCEC 75214439 + 75214419 75214459 41 TTTTATTTTCTTACAGCATTCCATGGCAATAGATTCTGGTT TTTTATTTTCTTACAGCATTCCATGACAATAGATTCTGGTT < 41bp 1 0.110797422867234 1 0.341788798570633 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TYW3 ENSG00000162623 CDS Human protein_coding chr1:75214439 chr1:75214444 nonsynonymous SNV 0.993 4 26 hm5C_associated_SNPs_42965 0 0 1 0 2 TYW3 chr1:75214506 5'GT 75214506 Upstream 63bp
chr1 75214444 75214444 1 + G A UCEC 75214440 + 75214420 75214460 41 TTTATTTTCTTACAGCATTCCATGGCAATAGATTCTGGTTT TTTATTTTCTTACAGCATTCCATGACAATAGATTCTGGTTT < 41bp 1 0.412586819727914 1 0.133907645940781 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TYW3 ENSG00000162623 CDS Human protein_coding chr1:75214440 chr1:75214444 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_42966 0 0 1 0 2 TYW3 chr1:75214435 3'AG 75214435 Downstream 10bp
chr1 75214444 75214444 1 + G A UCEC 75214440 + 75214420 75214460 41 TTTATTTTCTTACAGCATTCCATGGCAATAGATTCTGGTTT TTTATTTTCTTACAGCATTCCATGACAATAGATTCTGGTTT < 41bp 1 0.412586819727914 1 0.133907645940781 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TYW3 ENSG00000162623 CDS Human protein_coding chr1:75214440 chr1:75214444 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_42966 0 0 1 0 2 TYW3 chr1:75214506 5'GT 75214506 Upstream 63bp
chr10 75830571 75830571 1 + A T UCEC 75830552 + 75830532 75830572 41 TCCTCTCTGGAACATCAGACCTGCTCCTTACCTTCGATGAG TCCTCTCTGGAACATCAGACCTGCTCCTTACCTTCGATGTG < 41bp 1 0.316635524103393 1 0.026380181312561 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75830552 chr10:75830571 nonsynonymous SNV 0.998 4 40 hm5C_associated_SNPs_42967 0 0 1 0 1 VCL chr10:75830578 5'GT 75830578 Upstream 8bp
chrX 77373633 77373633 1 + A T UCEC 77373646 + 77373626 77373666 41 CTTGGAGAGCCCAGAGCGACCCTTCCTGGCCATCCTGGGCG CTTGGAGTGCCCAGAGCGACCCTTCCTGGCCATCCTGGGCG < 41bp 1 0.0737082680129575 1 0.0477201342582703 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77373646 chrX:77373633 nonsynonymous SNV 0.995 2 8 hm5C_associated_SNPs_42968 0 0 1 2 2 PGK1 chrX:77373548 3'AG 77373548 Downstream 86bp
chrX 77373633 77373633 1 + A T UCEC 77373646 + 77373626 77373666 41 CTTGGAGAGCCCAGAGCGACCCTTCCTGGCCATCCTGGGCG CTTGGAGTGCCCAGAGCGACCCTTCCTGGCCATCCTGGGCG < 41bp 1 0.0737082680129575 1 0.0477201342582703 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77373646 chrX:77373633 nonsynonymous SNV 0.995 2 8 hm5C_associated_SNPs_42968 0 0 1 2 2 PGK1 chrX:77373667 5'GT 77373667 Upstream 35bp
chr16 28845686 28845686 1 + C A UCEC 28845668 + 28845648 28845688 41 GTGTCCTCATCCCCAGGCACCTCAGATGTATCCATATCCTG GTGTCCTCATCCCCAGGCACCTCAGATGTATCCATATCATG < 41bp 1 0.237769794153093 1 0.0978447198867798 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28845668 chr16:28845686 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_42969 0 0 1 0 2 ATXN2L chr16:28845664 3'AG 28845664 Downstream 23bp
chr16 28845686 28845686 1 + C A UCEC 28845668 + 28845648 28845688 41 GTGTCCTCATCCCCAGGCACCTCAGATGTATCCATATCCTG GTGTCCTCATCCCCAGGCACCTCAGATGTATCCATATCATG < 41bp 1 0.237769794153093 1 0.0978447198867798 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28845668 chr16:28845686 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_42969 0 0 1 0 2 ATXN2L chr16:28845736 5'GT 28845736 Upstream 51bp
chr3 50131284 50131284 1 + T A UCEC 50131269 + 50131249 50131289 41 GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCAT GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTACCCAT < 41bp 1 0.469317983406844 1 0.236827671527863 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131269 chr3:50131284 nonsynonymous SNV . 0 36 hm5C_associated_SNPs_42970 0 0 1 0 2 RBM5 chr3:50131254 3'AG 50131254 Downstream 31bp
chr3 50131284 50131284 1 + T A UCEC 50131269 + 50131249 50131289 41 GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCAT GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTACCCAT < 41bp 1 0.469317983406844 1 0.236827671527863 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131269 chr3:50131284 nonsynonymous SNV . 0 36 hm5C_associated_SNPs_42970 0 0 1 0 2 RBM5 chr3:50131308 5'GT 50131308 Upstream 25bp
chr16 28950005 28950005 1 + T A UCEC 28950000 + 28949980 28950020 41 ATCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGA ATCCCCCGCCCAAGCAGGGTCCCAGACCTATGAGGATATGA < 41bp 1 0.0777632820981057 1 0.0983783900737762 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950000 chr16:28950005 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_42971 0 0 0 0 3 CD19 chr16:28949994 3'AG 28949994 Downstream 12bp
chr16 28950005 28950005 1 + T A UCEC 28950000 + 28949980 28950020 41 ATCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGA ATCCCCCGCCCAAGCAGGGTCCCAGACCTATGAGGATATGA < 41bp 1 0.0777632820981057 1 0.0983783900737762 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950000 chr16:28950005 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_42971 0 0 0 0 3 CD19 chr16:28949997 3'AG 28949997 Downstream 9bp
chr16 28950005 28950005 1 + T A UCEC 28950000 + 28949980 28950020 41 ATCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGA ATCCCCCGCCCAAGCAGGGTCCCAGACCTATGAGGATATGA < 41bp 1 0.0777632820981057 1 0.0983783900737762 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950000 chr16:28950005 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_42971 0 0 0 0 3 CD19 chr16:28950089 5'GT 28950089 Upstream 85bp
chr16 28950005 28950005 1 + T A UCEC 28950001 + 28949981 28950021 41 TCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAG TCCCCCGCCCAAGCAGGGTCCCAGACCTATGAGGATATGAG < 41bp 1 0.14725072798058 1 0.0873808562755585 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950001 chr16:28950005 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_42972 0 0 0 0 3 CD19 chr16:28949994 3'AG 28949994 Downstream 12bp
chr16 28950005 28950005 1 + T A UCEC 28950001 + 28949981 28950021 41 TCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAG TCCCCCGCCCAAGCAGGGTCCCAGACCTATGAGGATATGAG < 41bp 1 0.14725072798058 1 0.0873808562755585 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950001 chr16:28950005 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_42972 0 0 0 0 3 CD19 chr16:28949997 3'AG 28949997 Downstream 9bp
chr16 28950005 28950005 1 + T A UCEC 28950001 + 28949981 28950021 41 TCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAG TCCCCCGCCCAAGCAGGGTCCCAGACCTATGAGGATATGAG < 41bp 1 0.14725072798058 1 0.0873808562755585 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950001 chr16:28950005 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_42972 0 0 0 0 3 CD19 chr16:28950089 5'GT 28950089 Upstream 85bp
chr16 28950005 28950005 1 + T A UCEC 28950002 + 28949982 28950022 41 CCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAGA CCCCCGCCCAAGCAGGGTCCCAGACCTATGAGGATATGAGA < 41bp 1 0.137027684441051 1 0.0883345901966095 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950002 chr16:28950005 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_42973 0 0 0 0 3 CD19 chr16:28949994 3'AG 28949994 Downstream 12bp
chr16 28950005 28950005 1 + T A UCEC 28950002 + 28949982 28950022 41 CCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAGA CCCCCGCCCAAGCAGGGTCCCAGACCTATGAGGATATGAGA < 41bp 1 0.137027684441051 1 0.0883345901966095 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950002 chr16:28950005 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_42973 0 0 0 0 3 CD19 chr16:28949997 3'AG 28949997 Downstream 9bp
chr16 28950005 28950005 1 + T A UCEC 28950002 + 28949982 28950022 41 CCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAGA CCCCCGCCCAAGCAGGGTCCCAGACCTATGAGGATATGAGA < 41bp 1 0.137027684441051 1 0.0883345901966095 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950002 chr16:28950005 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_42973 0 0 0 0 3 CD19 chr16:28950089 5'GT 28950089 Upstream 85bp
chr17 4701670 4701670 1 + G A UCEC 4701676 + 4701656 4701696 41 GGCAAGTACTTTTGGGAGACCAGATACCCAAATTCGCCGTT GGCAAGTACTTTTGAGAGACCAGATACCCAAATTCGCCGTT < 41bp 1 0.720002888579915 1 0.434765309095383 experiment 0.559994222840169 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMB6 ENSG00000142507 CDS Human protein_coding chr17:4701676 chr17:4701670 nonsynonymous SNV 0.998 4 15 hm5C_associated_SNPs_42974 0 0 1 0 1 PSMB6 chr17:4701575 3'AG 4701575 Downstream 96bp
chr18 9954115 9954115 1 + C A UCEC 9954099 + 9954079 9954119 41 ACATTCGGATAAACCTGGATCAACCTCAACTGCATCCTTCA ACATTCGGATAAACCTGGATCAACCTCAACTGCATCATTCA < 41bp 1 0.231366068333189 1 0.14709135890007 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VAPA ENSG00000101558 CDS Human protein_coding chr18:9954099 chr18:9954115 synonymous SNV . 0 37 hm5C_associated_SNPs_42975 0 0 1 0 1 VAPA chr18:9954050 3'AG 9954050 Downstream 66bp
chr12 95888844 95888844 1 + C T UCEC 95888833 + 95888813 95888853 41 CTCTCAATAATTGTGCTGCCCATTATACTCCCAATGCCGGT CTCTCAATAATTGTGCTGCCCATTATACTCCTAATGCCGGT < 41bp 1 0.32145210351568 1 0.0506909787654877 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95888833 chr12:95888844 synonymous SNV . 0 32 hm5C_associated_SNPs_42976 0 0 1 1 1 METAP2 chr12:95888914 5'GT 95888914 Upstream 71bp
chr21 46900044 46900044 1 + G T UCEC 46900048 + 46900028 46900068 41 GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACGACAAGC GCCTCCAGGGCCCCCATGACCCTCCTTCAGACACGACAAGC < 41bp 1 0.0737262142589496 1 0.0499127507209778 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900048 chr21:46900044 stopgain 0.990 1 17 hm5C_associated_SNPs_42977 0 0 1 0 2 COL18A1 chr21:46899984 3'AG 46899984 Downstream 61bp
chr21 46900044 46900044 1 + G T UCEC 46900048 + 46900028 46900068 41 GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACGACAAGC GCCTCCAGGGCCCCCATGACCCTCCTTCAGACACGACAAGC < 41bp 1 0.0737262142589496 1 0.0499127507209778 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900048 chr21:46900044 stopgain 0.990 1 17 hm5C_associated_SNPs_42977 0 0 1 0 2 COL18A1 chr21:46900070 5'GT 46900070 Upstream 27bp
chrX 48385628 48385628 1 + C T UCEC 48385618 + 48385598 48385638 41 CTCAGCCTGTGGGTGGTGATCGCCTTTCTCCGCCAGCATCC CTCAGCCTGTGGGTGGTGATCGCCTTTCTCTGCCAGCATCC < 41bp 1 0.773073391373659 1 0.201389014720917 experiment 0.453853217252682 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EBP ENSG00000147155 CDS Human protein_coding chrX:48385618 chrX:48385628 nonsynonymous SNV 0.993 3 31 hm5C_associated_SNPs_42980 0 0 1 0 2 EBP chrX:48385543 3'AG 48385543 Downstream 86bp
chrX 48385628 48385628 1 + C T UCEC 48385618 + 48385598 48385638 41 CTCAGCCTGTGGGTGGTGATCGCCTTTCTCCGCCAGCATCC CTCAGCCTGTGGGTGGTGATCGCCTTTCTCTGCCAGCATCC < 41bp 1 0.773073391373659 1 0.201389014720917 experiment 0.453853217252682 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EBP ENSG00000147155 CDS Human protein_coding chrX:48385618 chrX:48385628 nonsynonymous SNV 0.993 3 31 hm5C_associated_SNPs_42980 0 0 1 0 2 EBP chrX:48385673 5'GT 48385673 Upstream 46bp
chr2 217311862 217311862 1 + G A UCEC 217311863 + 217311843 217311883 41 TTTCATGCCTTTGGACTTCGCTACTGTGATGCCAAACGGGT TTTCATGCCTTTGGACTTCACTACTGTGATGCCAAACGGGT < 41bp 1 0.474611928353265 1 0.107269793748856 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311863 chr2:217311862 nonsynonymous SNV 1.000 5 20 hm5C_associated_SNPs_42981 0 0 0 2 1 SMARCAL1 chr2:217311881 5'GT 217311881 Upstream 20bp
chr2 217311862 217311862 1 + G A UCEC 217311866 + 217311846 217311886 41 CATGCCTTTGGACTTCGCTACTGTGATGCCAAACGGGTATG CATGCCTTTGGACTTCACTACTGTGATGCCAAACGGGTATG < 41bp 1 0.416005175128236 1 0.0473084151744843 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311866 chr2:217311862 nonsynonymous SNV 1.000 5 17 hm5C_associated_SNPs_42982 0 0 0 2 1 SMARCAL1 chr2:217311881 5'GT 217311881 Upstream 20bp
chr17 48154398 48154398 1 + G A UCEC 48154383 + 48154363 48154403 41 AAATTGCTCCTGAGCATCAACGTGACGAACACCCGGACCTC AAATTGCTCCTGAGCATCAACGTGACGAACACCCGAACCTC < 41bp 1 0.682362729225839 1 0.465888321399689 experiment 0.635274541548321 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48154383 chr17:48154398 synonymous SNV . 0 36 hm5C_associated_SNPs_42985 0 0 0 0 2 ITGA3 chr17:48154338 3'AG 48154338 Downstream 61bp
chr17 48154398 48154398 1 + G A UCEC 48154383 + 48154363 48154403 41 AAATTGCTCCTGAGCATCAACGTGACGAACACCCGGACCTC AAATTGCTCCTGAGCATCAACGTGACGAACACCCGAACCTC < 41bp 1 0.682362729225839 1 0.465888321399689 experiment 0.635274541548321 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48154383 chr17:48154398 synonymous SNV . 0 36 hm5C_associated_SNPs_42985 0 0 0 0 2 ITGA3 chr17:48154485 5'GT 48154485 Upstream 88bp
chr17 48154398 48154398 1 + G A UCEC 48154408 + 48154388 48154428 41 CGAACACCCGGACCTCGGAGCGCTCCGGGGAGGACGCCCAC CGAACACCCGAACCTCGGAGCGCTCCGGGGAGGACGCCCAC < 41bp 1 0.107841518291905 1 0.142307877540588 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48154408 chr17:48154398 synonymous SNV . 0 11 hm5C_associated_SNPs_42986 0 0 0 0 2 ITGA3 chr17:48154338 3'AG 48154338 Downstream 61bp
chr17 48154398 48154398 1 + G A UCEC 48154408 + 48154388 48154428 41 CGAACACCCGGACCTCGGAGCGCTCCGGGGAGGACGCCCAC CGAACACCCGAACCTCGGAGCGCTCCGGGGAGGACGCCCAC < 41bp 1 0.107841518291905 1 0.142307877540588 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48154408 chr17:48154398 synonymous SNV . 0 11 hm5C_associated_SNPs_42986 0 0 0 0 2 ITGA3 chr17:48154485 5'GT 48154485 Upstream 88bp
chr17 48154398 48154398 1 + G A UCEC 48154410 + 48154390 48154430 41 AACACCCGGACCTCGGAGCGCTCCGGGGAGGACGCCCACGA AACACCCGAACCTCGGAGCGCTCCGGGGAGGACGCCCACGA < 41bp 1 0.578385050637676 1 0.765070259571075 experiment 0.843229898724648 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48154410 chr17:48154398 synonymous SNV . 0 9 hm5C_associated_SNPs_42987 0 0 0 0 2 ITGA3 chr17:48154338 3'AG 48154338 Downstream 61bp
chr17 48154398 48154398 1 + G A UCEC 48154410 + 48154390 48154430 41 AACACCCGGACCTCGGAGCGCTCCGGGGAGGACGCCCACGA AACACCCGAACCTCGGAGCGCTCCGGGGAGGACGCCCACGA < 41bp 1 0.578385050637676 1 0.765070259571075 experiment 0.843229898724648 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48154410 chr17:48154398 synonymous SNV . 0 9 hm5C_associated_SNPs_42987 0 0 0 0 2 ITGA3 chr17:48154485 5'GT 48154485 Upstream 88bp
chr9 139730262 139730262 1 + G A UCEC 139730261 + 139730241 139730281 41 CGCCACGCTGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGG CGCCACGCTGGAGGAGCTGTCAGTGCAGCAGGAGACGGAGG < 41bp 1 0.481985137743974 1 0.558240115642548 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139730261 chr9:139730262 synonymous SNV . 0 22 hm5C_associated_SNPs_42988 0 0 1 1 2 RABL6 chr9:139730194 3'AG 139730194 Downstream 69bp
chr9 139730262 139730262 1 + G A UCEC 139730261 + 139730241 139730281 41 CGCCACGCTGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGG CGCCACGCTGGAGGAGCTGTCAGTGCAGCAGGAGACGGAGG < 41bp 1 0.481985137743974 1 0.558240115642548 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139730261 chr9:139730262 synonymous SNV . 0 22 hm5C_associated_SNPs_42988 0 0 1 1 2 RABL6 chr9:139730297 5'GT 139730297 Upstream 36bp
chr9 139730262 139730262 1 + G A UCEC 139730269 + 139730249 139730289 41 TGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGGACCAGAAC TGGAGGAGCTGTCAGTGCAGCAGGAGACGGAGGACCAGAAC < 41bp 1 0.785914899634106 1 0.824975371360779 experiment 0.428170200731788 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139730269 chr9:139730262 synonymous SNV . 0 14 hm5C_associated_SNPs_42989 0 0 1 1 2 RABL6 chr9:139730194 3'AG 139730194 Downstream 69bp
chr9 139730262 139730262 1 + G A UCEC 139730269 + 139730249 139730289 41 TGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGGACCAGAAC TGGAGGAGCTGTCAGTGCAGCAGGAGACGGAGGACCAGAAC < 41bp 1 0.785914899634106 1 0.824975371360779 experiment 0.428170200731788 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139730269 chr9:139730262 synonymous SNV . 0 14 hm5C_associated_SNPs_42989 0 0 1 1 2 RABL6 chr9:139730297 5'GT 139730297 Upstream 36bp
chr5 908490 908490 1 + C T UCEC 908507 + 908487 908527 41 CGCCCGAAATGCCTGCAGGGCGGGCACCGAGCCATCAGATG CGCTCGAAATGCCTGCAGGGCGGGCACCGAGCCATCAGATG < 41bp 1 0.540329602113494 1 0.302717089653015 experiment 0.919340795773012 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908507 chr5:908490 synonymous SNV . 0 4 hm5C_associated_SNPs_42990 0 0 1 0 2 TRIP13 chr5:908470 3'AG 908470 Downstream 21bp
chr5 908490 908490 1 + C T UCEC 908507 + 908487 908527 41 CGCCCGAAATGCCTGCAGGGCGGGCACCGAGCCATCAGATG CGCTCGAAATGCCTGCAGGGCGGGCACCGAGCCATCAGATG < 41bp 1 0.540329602113494 1 0.302717089653015 experiment 0.919340795773012 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908507 chr5:908490 synonymous SNV . 0 4 hm5C_associated_SNPs_42990 0 0 1 0 2 TRIP13 chr5:908576 5'GT 908576 Upstream 87bp
chr14 73725984 73725984 1 + A G UCEC 73725978 + 73725958 73725998 41 TTTTGCTTCTTCTTTCTAGACTCCAGAGGCCAGTGGTGGGC TTTTGCTTCTTCTTTCTAGACTCCAGGGGCCAGTGGTGGGC < 41bp 1 0.714141465193618 1 0.902935147285461 experiment 0.571717069612763 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74772;RNA-BisSeq;HCT116;Control PAPLN ENSG00000100767 CDS Human protein_coding chr14:73725978 chr14:73725984 synonymous SNV . 0 27 hm5C_associated_SNPs_42991 0 0 1 0 1 PAPLN chr14:73725977 3'AG 73725977 Downstream 8bp
chr11 125445274 125445274 1 + G T UCEC 125445260 + 125445240 125445280 41 CGAAGAAGGGCAAGTAGTGTCTTGGCACAGAGAAGAGCCCA CGAAGAAGGGCAAGTAGTGTCTTGGCACAGAGAATAGCCCA < 41bp 1 0.688500536006585 1 0.43730503320694 experiment 0.62299892798683 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EI24 ENSG00000149547 CDS Human protein_coding chr11:125445260 chr11:125445274 stopgain 0.998 4 35 hm5C_associated_SNPs_42992 0 0 1 2 3 EI24 chr11:125445201 3'AG 125445201 Downstream 74bp
chr11 125445274 125445274 1 + G T UCEC 125445260 + 125445240 125445280 41 CGAAGAAGGGCAAGTAGTGTCTTGGCACAGAGAAGAGCCCA CGAAGAAGGGCAAGTAGTGTCTTGGCACAGAGAATAGCCCA < 41bp 1 0.688500536006585 1 0.43730503320694 experiment 0.62299892798683 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EI24 ENSG00000149547 CDS Human protein_coding chr11:125445260 chr11:125445274 stopgain 0.998 4 35 hm5C_associated_SNPs_42992 0 0 1 2 3 EI24 chr11:125445205 3'AG 125445205 Downstream 70bp
chr11 125445274 125445274 1 + G T UCEC 125445260 + 125445240 125445280 41 CGAAGAAGGGCAAGTAGTGTCTTGGCACAGAGAAGAGCCCA CGAAGAAGGGCAAGTAGTGTCTTGGCACAGAGAATAGCCCA < 41bp 1 0.688500536006585 1 0.43730503320694 experiment 0.62299892798683 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EI24 ENSG00000149547 CDS Human protein_coding chr11:125445260 chr11:125445274 stopgain 0.998 4 35 hm5C_associated_SNPs_42992 0 0 1 2 3 EI24 chr11:125445304 5'GT 125445304 Upstream 31bp
chr19 42398345 42398345 1 + A T UCEC 42398364 + 42398344 42398384 41 GACAAGAAGTCGGGGAGGAACTTCTTCCGGAAAAAGGTGCT GTCAAGAAGTCGGGGAGGAACTTCTTCCGGAAAAAGGTGCT < 41bp 1 0.155623399622772 1 0.401497393846512 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42398364 chr19:42398345 nonsynonymous SNV 0.998 3 2 hm5C_associated_SNPs_42993 0 0 1 0 2 ARHGEF1 chr19:42398280 3'AG 42398280 Downstream 66bp
chr19 42398345 42398345 1 + A T UCEC 42398364 + 42398344 42398384 41 GACAAGAAGTCGGGGAGGAACTTCTTCCGGAAAAAGGTGCT GTCAAGAAGTCGGGGAGGAACTTCTTCCGGAAAAAGGTGCT < 41bp 1 0.155623399622772 1 0.401497393846512 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42398364 chr19:42398345 nonsynonymous SNV 0.998 3 2 hm5C_associated_SNPs_42993 0 0 1 0 2 ARHGEF1 chr19:42398379 5'GT 42398379 Upstream 35bp
chr19 56172418 56172418 1 + C A UCEC 56172435 + 56172415 56172455 41 ATTCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGG ATTACAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGG < 41bp 1 0.604002407604264 1 0.72695380449295 experiment 0.791995184791472 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172435 chr19:56172418 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_42994 0 0 1 0 1 U2AF2 chr19:56172404 3'AG 56172404 Downstream 15bp
chr19 56172418 56172418 1 + C A UCEC 56172437 + 56172417 56172457 41 TCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGGTC TACAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGGTC < 41bp 1 0.140769279748631 1 0.142303436994553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172437 chr19:56172418 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_42995 0 0 1 0 1 U2AF2 chr19:56172404 3'AG 56172404 Downstream 15bp
chr19 56172418 56172418 1 + C A UCEC 56172438 + 56172418 56172458 41 CCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGGTCT ACAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGGTCT < 41bp 1 0.725518364443546 1 0.71308434009552 experiment 0.548963271112909 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172438 chr19:56172418 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_42996 0 0 1 0 1 U2AF2 chr19:56172404 3'AG 56172404 Downstream 15bp
chr20 60963513 60963513 1 + G T UCEC 60963516 + 60963496 60963536 41 TTTTCCCCTGGTTCTAGGAACTTTTGACTGGAGAGAATCAC TTTTCCCCTGGTTCTAGTAACTTTTGACTGGAGAGAATCAC < 41bp 1 0.153124052771151 1 0.0490667521953583 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS21 ENSG00000171858 CDS Human protein_coding chr20:60963516 chr20:60963513 nonsynonymous SNV 0.932 1 18 hm5C_associated_SNPs_42997 0 0 1 1 1 RPS21 chr20:60963513 3'AG 60963513 Downstream 1bp
chrX 70517700 70517700 1 + G A UCEC 70517707 + 70517687 70517727 41 CAGGAGGAAGAGCGCAGGCGCCGTGAAGAAGAGATGCGGCG CAGGAGGAAGAGCACAGGCGCCGTGAAGAAGAGATGCGGCG < 41bp 1 0.179988274665629 1 0.288371682167053 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517707 chrX:70517700 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_42998 0 0 1 0 2 NONO chrX:70517686 3'AG 70517686 Downstream 15bp
chrX 70517700 70517700 1 + G A UCEC 70517707 + 70517687 70517727 41 CAGGAGGAAGAGCGCAGGCGCCGTGAAGAAGAGATGCGGCG CAGGAGGAAGAGCACAGGCGCCGTGAAGAAGAGATGCGGCG < 41bp 1 0.179988274665629 1 0.288371682167053 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517707 chrX:70517700 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_42998 0 0 1 0 2 NONO chrX:70517788 5'GT 70517788 Upstream 89bp
chr11 121495975 121495975 1 + A T UCEC 121495977 + 121495957 121495997 41 CCATCCTGCTGTACGATGAGCTGGGGTCTGGTGAGTTGCGA CCATCCTGCTGTACGATGTGCTGGGGTCTGGTGAGTTGCGA < 41bp 1 0.448612706719602 1 0.421901792287827 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SORL1 ENSG00000137642 CDS Human protein_coding chr11:121495977 chr11:121495975 nonsynonymous SNV 0.870 2 19 hm5C_associated_SNPs_42999 0 0 1 0 1 SORL1 chr11:121495986 5'GT 121495986 Upstream 12bp
chr14 102502976 102502976 1 + C A UCEC 102502965 + 102502945 102502985 41 GTGCACTGAGATTCGGTAACCCCCTTCTGGTCCAGGTTGGT GTGCACTGAGATTCGGTAACCCCCTTCTGGTACAGGTTGGT < 41bp 1 0.0389917435473406 1 0.0467683970928192 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102502965 chr14:102502976 synonymous SNV . 0 32 hm5C_associated_SNPs_43000 0 0 1 0 1 DYNC1H1 chr14:102502979 5'GT 102502979 Upstream 4bp
chr14 102502976 102502976 1 + C A UCEC 102502967 + 102502947 102502987 41 GCACTGAGATTCGGTAACCCCCTTCTGGTCCAGGTTGGTGT GCACTGAGATTCGGTAACCCCCTTCTGGTACAGGTTGGTGT < 41bp 1 0.0103070109324478 1 0.0528272390365601 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102502967 chr14:102502976 synonymous SNV . 0 30 hm5C_associated_SNPs_43001 0 0 1 0 1 DYNC1H1 chr14:102502979 5'GT 102502979 Upstream 4bp
chr5 145849213 145849213 1 + G A UCEC 145849206 + 145849186 145849226 41 AGCTGGAGCAACAGCAGTTTCTGAATGGACTGAATATAAAA AGCTGGAGCAACAGCAGTTTCTGAATGAACTGAATATAAAA < 41bp 1 0.770237129704155 1 0.555145382881165 experiment 0.459525740591691 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145849206 chr5:145849213 stopgain 1.000 1 28 hm5C_associated_SNPs_43003 0 0 1 0 1 TCERG1 chr5:145849307 5'GT 145849307 Upstream 95bp
chr1 231401803 231401803 1 + T G UCEC 231401783 + 231401763 231401803 41 TTCTGAATATTGTGATGGAGCCATTTTTTAAAAGAGAAGTT TTCTGAATATTGTGATGGAGCCATTTTTTAAAAGAGAAGTG < 41bp 1 0.0857851457105864 1 0.0545059442520142 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231401783 chr1:231401803 synonymous SNV . 0 41 hm5C_associated_SNPs_43005 0 0 1 0 1 GNPAT chr1:231401760 3'AG 231401760 Downstream 44bp
chr9 91930098 91930098 1 + C T UCEC 91930099 + 91930079 91930119 41 TAACAGGCATGTTATGTTACCCAGAGAACTTTCCAAACAAG TAACAGGCATGTTATGTTATCCAGAGAACTTTCCAAACAAG < 41bp 1 0.683957446417988 1 0.699949562549591 experiment 0.632085107164025 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CKS2 ENSG00000123975 CDS Human protein_coding chr9:91930099 chr9:91930098 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_43006 0 0 1 0 1 CKS2 chr9:91930085 3'AG 91930085 Downstream 14bp
chr9 91930098 91930098 1 + C T UCEC 91930100 + 91930080 91930120 41 AACAGGCATGTTATGTTACCCAGAGAACTTTCCAAACAAGT AACAGGCATGTTATGTTATCCAGAGAACTTTCCAAACAAGT < 41bp 1 0.497682009109605 1 0.670906662940979 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CKS2 ENSG00000123975 CDS Human protein_coding chr9:91930100 chr9:91930098 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_43007 0 0 1 0 1 CKS2 chr9:91930085 3'AG 91930085 Downstream 14bp
chr2 219269110 219269110 1 + G A UCEC 219269106 + 219269086 219269126 41 GAGCAACTCAGCCGTGTGGACGACGTGTACTCAGTGCTCAG GAGCAACTCAGCCGTGTGGACGACATGTACTCAGTGCTCAG < 41bp 1 0.719511784992361 1 0.124027281999588 experiment 0.560976430015278 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219269106 chr2:219269110 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_43008 0 0 1 0 1 CTDSP1 chr2:219269020 3'AG 219269020 Downstream 91bp
chr14 24634093 24634093 1 + C A UCEC 24634110 + 24634090 24634130 41 CACCTGGGCCAGGCCCGCATCTGCTGCCCAGCAACGAGTGC CACATGGGCCAGGCCCGCATCTGCTGCCCAGCAACGAGTGC < 41bp 1 0.559674772199058 1 0.423234522342682 experiment 0.880650455601884 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRF9 ENSG00000213928 CDS Human protein_coding chr14:24634110 chr14:24634093 nonsynonymous SNV 0.759 3 4 hm5C_associated_SNPs_43009 0 0 1 0 1 IRF9 chr14:24634164 5'GT 24634164 Upstream 72bp
chrX 21995204 21995204 1 + G T UCEC 21995205 + 21995185 21995225 41 ACCCATAGTGCGAGGAGGAGCCATCGACAGATACTGGCCCA ACCCATAGTGCGAGGAGGATCCATCGACAGATACTGGCCCA < 41bp 1 0.214487924121787 1 0.384813070297241 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMS ENSG00000102172 CDS Human protein_coding chrX:21995205 chrX:21995204 nonsynonymous SNV 0.998 0 20 hm5C_associated_SNPs_43011 0 0 1 0 1 SMS chrX:21995179 3'AG 21995179 Downstream 26bp
chr5 139917043 139917043 1 + C T UCEC 139917055 + 139917035 139917075 41 GATACCTCCCCCAATTGGAACAGAGAGACTGGCCCGAATTC GATACCTCTCCCAATTGGAACAGAGAGACTGGCCCGAATTC < 41bp 1 0.307483965638307 1 0.72403085231781 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139917055 chr5:139917043 nonsynonymous SNV 0.948 3 9 hm5C_associated_SNPs_43012 0 0 1 0 1 ANKHD1;ANKHD1-EIF4EBP3 chr5:139916974 3'AG 139916974 Downstream 70bp
chr14 24634098 24634098 1 + C A UCEC 24634110 + 24634090 24634130 41 CACCTGGGCCAGGCCCGCATCTGCTGCCCAGCAACGAGTGC CACCTGGGACAGGCCCGCATCTGCTGCCCAGCAACGAGTGC < 41bp 1 0.564631523628623 1 0.364329755306244 experiment 0.870736952742753 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRF9 ENSG00000213928 CDS Human protein_coding chr14:24634110 chr14:24634098 nonsynonymous SNV 0.759 2 9 hm5C_associated_SNPs_43013 0 0 1 0 1 IRF9 chr14:24634164 5'GT 24634164 Upstream 67bp
chr1 206653222 206653222 1 + A C UCEC 206653240 + 206653220 206653260 41 GGACGTCCCCAAGTTCGTCCCCAAAGTGGACCTGCAGGCGG GGCCGTCCCCAAGTTCGTCCCCAAAGTGGACCTGCAGGCGG < 41bp 1 0.451237572738455 1 0.260539293289185 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IKBKE ENSG00000143466 CDS Human other chr1:206653240 chr1:206653222 nonsynonymous SNV 0.828 2 3 hm5C_associated_SNPs_43014 0 0 0 0 2 IKBKE chr1:206653213 3'AG 206653213 Downstream 10bp
chr1 206653222 206653222 1 + A C UCEC 206653240 + 206653220 206653260 41 GGACGTCCCCAAGTTCGTCCCCAAAGTGGACCTGCAGGCGG GGCCGTCCCCAAGTTCGTCCCCAAAGTGGACCTGCAGGCGG < 41bp 1 0.451237572738455 1 0.260539293289185 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IKBKE ENSG00000143466 CDS Human other chr1:206653240 chr1:206653222 nonsynonymous SNV 0.828 2 3 hm5C_associated_SNPs_43014 0 0 0 0 2 IKBKE chr1:206653277 5'GT 206653277 Upstream 56bp
chr17 76061006 76061006 1 + C A UCEC 76061001 + 76060981 76061021 41 TGGCGCACCTGTTGCTGCCTCAGCCCTGTGCAAACCAGGTA TGGCGCACCTGTTGCTGCCTCAGCCATGTGCAAACCAGGTA < 41bp 1 0.246133274840363 1 0.21899026632309 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TNRC6C ENSG00000078687 CDS Human protein_coding chr17:76061001 chr17:76061006 nonsynonymous SNV 0.995 2 26 hm5C_associated_SNPs_43015 0 0 1 0 1 TNRC6C chr17:76061018 5'GT 76061018 Upstream 13bp
chr1 24022841 24022841 1 + G A UCEC 24022845 + 24022825 24022865 41 CTCTTTCAGTATGATGGGATCATCCTTCCTGGCAAATAAAT CTCTTTCAGTATGATGAGATCATCCTTCCTGGCAAATAAAT < 41bp 1 0.0885803577476065 1 0.034270852804184 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022845 chr1:24022841 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_43025 0 0 1 0 1 RPL11 chr1:24022834 3'AG 24022834 Downstream 8bp
chr1 24022841 24022841 1 + G A UCEC 24022848 + 24022828 24022868 41 TTTCAGTATGATGGGATCATCCTTCCTGGCAAATAAATTCC TTTCAGTATGATGAGATCATCCTTCCTGGCAAATAAATTCC < 41bp 1 0.0275606571158339 1 0.0607724785804749 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022848 chr1:24022841 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_43026 0 0 1 0 1 RPL11 chr1:24022834 3'AG 24022834 Downstream 8bp
chr19 13051195 13051195 1 + C T UCEC 13051175 + 13051155 13051195 41 AGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAGGATC AGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAGGATT < 41bp 1 0.318127413358566 1 0.122254312038422 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051175 chr19:13051195 nonsynonymous SNV 0.997 2 41 hm5C_associated_SNPs_43027 0 0 1 0 1 CALR chr19:13051266 5'GT 13051266 Upstream 72bp
chr19 13051195 13051195 1 + C T UCEC 13051210 + 13051190 13051230 41 AGGATCCTGATGCTTCAAAACCGGAAGACTGGGATGAGCGG AGGATTCTGATGCTTCAAAACCGGAAGACTGGGATGAGCGG < 41bp 1 0.748537030441133 1 0.410296857357025 experiment 0.502925939117733 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051210 chr19:13051195 nonsynonymous SNV 0.997 2 6 hm5C_associated_SNPs_43028 0 0 1 0 1 CALR chr19:13051266 5'GT 13051266 Upstream 72bp
chr1 155106000 155106000 1 + A T UCEC 155106004 + 155105984 155106024 41 CCCATCCACCAGCATGAAGACCGCTGCTTGAGGTTGAAGGT CCCATCCACCAGCATGTAGACCGCTGCTTGAGGTTGAAGGT < 41bp 1 0.200388976381544 1 0.123533844947815 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNA1 ENSG00000169242 CDS Human protein_coding chr1:155106004 chr1:155106000 nonsynonymous SNV 0.935 2 17 hm5C_associated_SNPs_43031 0 0 1 0 2 EFNA1 chr1:155105979 3'AG 155105979 Downstream 22bp
chr1 155106000 155106000 1 + A T UCEC 155106004 + 155105984 155106024 41 CCCATCCACCAGCATGAAGACCGCTGCTTGAGGTTGAAGGT CCCATCCACCAGCATGTAGACCGCTGCTTGAGGTTGAAGGT < 41bp 1 0.200388976381544 1 0.123533844947815 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNA1 ENSG00000169242 CDS Human protein_coding chr1:155106004 chr1:155106000 nonsynonymous SNV 0.935 2 17 hm5C_associated_SNPs_43031 0 0 1 0 2 EFNA1 chr1:155106044 5'GT 155106044 Upstream 45bp
chr19 13002745 13002745 1 + G T UCEC 13002759 + 13002739 13002779 41 CTGCCAGGAGAGACTCATGCCTCGCATCCTGTTGGCCAATC CTGCCATGAGAGACTCATGCCTCGCATCCTGTTGGCCAATC < 41bp 1 0.576762919942688 1 0.244449704885483 experiment 0.846474160114623 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13002759 chr19:13002745 nonsynonymous SNV 0.992 3 7 hm5C_associated_SNPs_43033 0 0 1 0 1 GCDH chr19:13002788 5'GT 13002788 Upstream 44bp
chr8 143816765 143816765 1 + G A UCEC 143816777 + 143816757 143816797 41 AGCTGCCCGCTGATCTGCAGCACTGGATCTCCTACAACGAG AGCTGCCCACTGATCTGCAGCACTGGATCTCCTACAACGAG < 41bp 1 0.201035690325394 1 0.169612348079681 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THEM6 ENSG00000130193 CDS Human protein_coding chr8:143816777 chr8:143816765 nonsynonymous SNV 0.438 0 9 hm5C_associated_SNPs_43034 0 0 1 0 1 THEM6 chr8:143816744 3'AG 143816744 Downstream 22bp
chr19 1036137 1036137 1 + T C UCEC 1036125 + 1036105 1036145 41 TCCCGGCCCCTTTCCCTCACCCAGGCCAAGACTAAGGGGCT TCCCGGCCCCTTTCCCTCACCCAGGCCAAGACCAAGGGGCT < 41bp 1 0.314783458066883 1 0.70249879360199 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1036125 chr19:1036137 synonymous SNV . 0 33 hm5C_associated_SNPs_43035 0 0 1 0 2 CNN2 chr19:1036066 3'AG 1036066 Downstream 72bp
chr19 1036137 1036137 1 + T C UCEC 1036125 + 1036105 1036145 41 TCCCGGCCCCTTTCCCTCACCCAGGCCAAGACTAAGGGGCT TCCCGGCCCCTTTCCCTCACCCAGGCCAAGACCAAGGGGCT < 41bp 1 0.314783458066883 1 0.70249879360199 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1036125 chr19:1036137 synonymous SNV . 0 33 hm5C_associated_SNPs_43035 0 0 1 0 2 CNN2 chr19:1036129 3'AG 1036129 Downstream 9bp
chr11 722468 722468 1 + C T UCEC 722478 + 722458 722498 41 TCCCGAGATGCCGTGGACTTCCTGCGCGGCCACCTGGTCCC TCCCGAGATGTCGTGGACTTCCTGCGCGGCCACCTGGTCCC < 41bp 1 0.270284528707235 1 0.129941076040268 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722478 chr11:722468 nonsynonymous SNV 0.017 1 11 hm5C_associated_SNPs_43036 0 0 1 0 2 EPS8L2 chr11:722401 3'AG 722401 Downstream 68bp
chr11 722468 722468 1 + C T UCEC 722478 + 722458 722498 41 TCCCGAGATGCCGTGGACTTCCTGCGCGGCCACCTGGTCCC TCCCGAGATGTCGTGGACTTCCTGCGCGGCCACCTGGTCCC < 41bp 1 0.270284528707235 1 0.129941076040268 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722478 chr11:722468 nonsynonymous SNV 0.017 1 11 hm5C_associated_SNPs_43036 0 0 1 0 2 EPS8L2 chr11:722549 5'GT 722549 Upstream 82bp
chr7 151791328 151791328 1 + G T UCEC 151791339 + 151791319 151791359 41 AGTGTCACAGTTCGGTATTTCTGTTATGGGTGCCTTTTTAC AGTGTCACATTTCGGTATTTCTGTTATGGGTGCCTTTTTAC < 41bp 1 0.233106432726199 1 0.0547597110271454 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151791339 chr7:151791328 nonsynonymous SNV 0.998 1 10 hm5C_associated_SNPs_43037 0 0 1 0 1 GALNT11 chr7:151791275 3'AG 151791275 Downstream 54bp
chrX 70519859 70519859 1 + C A UCEC 70519864 + 70519844 70519884 41 GGGCAATTGGTGGAACTCCTCCTGCATTCAACCGTGCAGCT GGGCAATTGGTGGAAATCCTCCTGCATTCAACCGTGCAGCT < 41bp 1 0.256496458680957 1 0.219072639942169 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70519864 chrX:70519859 nonsynonymous SNV 1.000 0 16 hm5C_associated_SNPs_43038 0 0 1 0 1 NONO chrX:70519792 3'AG 70519792 Downstream 68bp
chrX 21995199 21995199 1 + G A UCEC 21995205 + 21995185 21995225 41 ACCCATAGTGCGAGGAGGAGCCATCGACAGATACTGGCCCA ACCCATAGTGCGAGAAGGAGCCATCGACAGATACTGGCCCA < 41bp 1 0.161595556895989 1 0.271789491176605 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMS ENSG00000102172 CDS Human protein_coding chrX:21995205 chrX:21995199 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_43041 0 0 1 0 1 SMS chrX:21995179 3'AG 21995179 Downstream 21bp
chrX 106893244 106893244 1 + C A UCEC 106893248 + 106893228 106893268 41 CCGTTTCTTACCTATTCAGCCATGTCCCTTTATAATAGAGT CCGTTTCTTACCTATTAAGCCATGTCCCTTTATAATAGAGT < 41bp 1 0.0567063020110457 1 0.0808222591876984 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106893248 chrX:106893244 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_43042 0 0 1 0 1 PRPS1 chrX:106893170 3'AG 106893170 Downstream 75bp
chrX 106893244 106893244 1 + C A UCEC 106893253 + 106893233 106893273 41 TCTTACCTATTCAGCCATGTCCCTTTATAATAGAGTAACTT TCTTACCTATTAAGCCATGTCCCTTTATAATAGAGTAACTT < 41bp 1 0.0733483328225044 1 0.0632898807525635 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106893253 chrX:106893244 nonsynonymous SNV 0.998 4 12 hm5C_associated_SNPs_43043 0 0 1 0 1 PRPS1 chrX:106893170 3'AG 106893170 Downstream 75bp
chr12 7019080 7019080 1 + A C UCEC 7019093 + 7019073 7019113 41 AGGTGGAAGGCTTGGAGGATCTGAGCAATCTCACCACCTTG AGGTGGACGGCTTGGAGGATCTGAGCAATCTCACCACCTTG < 41bp 1 0.637247354367533 1 0.0847408175468445 experiment 0.725505291264934 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRRC23 ENSG00000010626 CDS Human protein_coding chr12:7019093 chr12:7019080 nonsynonymous SNV 0.979 0 8 hm5C_associated_SNPs_43044 0 0 0 0 1 LRRC23 chr12:7019054 3'AG 7019054 Downstream 27bp
chr22 38028088 38028088 1 + C T UCEC 38028074 + 38028054 38028094 41 TCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTG TCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCTGACGTG < 41bp 1 0.407587387498002 1 0.171290010213852 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38028074 chr22:38028088 synonymous SNV . 0 35 hm5C_associated_SNPs_43046 0 0 1 0 2 GGA1 chr22:38028003 3'AG 38028003 Downstream 86bp
chr22 38028088 38028088 1 + C T UCEC 38028074 + 38028054 38028094 41 TCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTG TCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCTGACGTG < 41bp 1 0.407587387498002 1 0.171290010213852 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38028074 chr22:38028088 synonymous SNV . 0 35 hm5C_associated_SNPs_43046 0 0 1 0 2 GGA1 chr22:38028172 5'GT 38028172 Upstream 85bp
chrX 135291509 135291509 1 + C T UCEC 135291501 + 135291481 135291521 41 TCTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATC TCTCACCCTGTTTCCCAGCGCCAACCTCTGGGGCAGGCATC < 41bp 1 0.0730378223539875 1 0.236107856035233 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291501 chrX:135291509 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_43049 0 0 1 0 1 FHL1 chrX:135291601 5'GT 135291601 Upstream 93bp
chrX 135291509 135291509 1 + C T UCEC 135291502 + 135291482 135291522 41 CTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATCC CTCACCCTGTTTCCCAGCGCCAACCTCTGGGGCAGGCATCC < 41bp 1 0.181547881071307 1 0.160467505455017 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291502 chrX:135291509 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_43050 0 0 1 0 1 FHL1 chrX:135291601 5'GT 135291601 Upstream 93bp
chr19 45389218 45389218 1 + G A UCEC 45389205 + 45389185 45389225 41 ACCCCACAGCCTGGAGGGACCTCCCTCCTACAAGCCACCAA ACCCCACAGCCTGGAGGGACCTCCCTCCTACAAACCACCAA < 41bp 1 0.35419531101465 1 0.150093525648117 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45389205 chr19:45389218 synonymous SNV . 0 34 hm5C_associated_SNPs_43051 0 0 0 0 2 NECTIN2 chr19:45389194 3'AG 45389194 Downstream 25bp
chr19 45389218 45389218 1 + G A UCEC 45389205 + 45389185 45389225 41 ACCCCACAGCCTGGAGGGACCTCCCTCCTACAAGCCACCAA ACCCCACAGCCTGGAGGGACCTCCCTCCTACAAACCACCAA < 41bp 1 0.35419531101465 1 0.150093525648117 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45389205 chr19:45389218 synonymous SNV . 0 34 hm5C_associated_SNPs_43051 0 0 0 0 2 NECTIN2 chr19:45389257 5'GT 45389257 Upstream 40bp
chr19 3207654 3207654 1 + C A UCEC 3207638 + 3207618 3207658 41 TGTCCCCAGCACTTCAGCCTCCTCTACAAGACCGTCCAGAG TGTCCCCAGCACTTCAGCCTCCTCTACAAGACCGTCAAGAG < 41bp 1 0.0634035631984 1 0.136086195707321 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCLN ENSG00000125912 CDS Human protein_coding chr19:3207638 chr19:3207654 nonsynonymous SNV 0.682 0 37 hm5C_associated_SNPs_43052 0 0 1 0 2 NCLN chr19:3207627 3'AG 3207627 Downstream 28bp
chr19 3207654 3207654 1 + C A UCEC 3207638 + 3207618 3207658 41 TGTCCCCAGCACTTCAGCCTCCTCTACAAGACCGTCCAGAG TGTCCCCAGCACTTCAGCCTCCTCTACAAGACCGTCAAGAG < 41bp 1 0.0634035631984 1 0.136086195707321 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCLN ENSG00000125912 CDS Human protein_coding chr19:3207638 chr19:3207654 nonsynonymous SNV 0.682 0 37 hm5C_associated_SNPs_43052 0 0 1 0 2 NCLN chr19:3207745 5'GT 3207745 Upstream 92bp
chr10 118314932 118314932 1 + G T UCEC 118314913 + 118314893 118314933 41 ATTTCAGGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGA ATTTCAGGGTTTGGAATGAGCCAAGTCGTGGGCCACCTATA < 41bp 1 0.351364702775284 1 0.11738595366478 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314913 chr10:118314932 nonsynonymous SNV 0.983 5 40 hm5C_associated_SNPs_43053 0 0 0 0 1 PNLIP chr10:118315019 5'GT 118315019 Upstream 88bp
chr10 118314932 118314932 1 + G T UCEC 118314914 + 118314894 118314934 41 TTTCAGGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGAT TTTCAGGGTTTGGAATGAGCCAAGTCGTGGGCCACCTATAT < 41bp 1 0.55452942077097 1 0.271724939346313 experiment 0.89094115845806 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314914 chr10:118314932 nonsynonymous SNV 0.983 5 39 hm5C_associated_SNPs_43054 0 0 0 0 1 PNLIP chr10:118315019 5'GT 118315019 Upstream 88bp
chr10 118314932 118314932 1 + G T UCEC 118314919 + 118314899 118314939 41 GGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTT GGGTTTGGAATGAGCCAAGTCGTGGGCCACCTATATTTCTT < 41bp 1 0.639924411157045 1 0.288639605045319 experiment 0.72015117768591 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314919 chr10:118314932 nonsynonymous SNV 0.983 5 34 hm5C_associated_SNPs_43055 0 0 0 0 1 PNLIP chr10:118315019 5'GT 118315019 Upstream 88bp
chr10 118314932 118314932 1 + G T UCEC 118314925 + 118314905 118314945 41 GGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTTTCCAAA GGAATGAGCCAAGTCGTGGGCCACCTATATTTCTTTCCAAA < 41bp 1 0.0964701989963231 1 0.0425909459590912 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314925 chr10:118314932 nonsynonymous SNV 0.983 5 28 hm5C_associated_SNPs_43056 0 0 0 0 1 PNLIP chr10:118315019 5'GT 118315019 Upstream 88bp
chr11 125442450 125442450 1 + C A UCEC 125442448 + 125442428 125442468 41 CTGACAGTGTCAAAACCTTTCTCCAGGACCTTGCCAGAGTG CTGACAGTGTCAAAACCTTTCTACAGGACCTTGCCAGAGTG < 41bp 1 0.782224543947681 1 0.892343282699585 experiment 0.435550912104637 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control EI24 ENSG00000149547 CDS Human antisense chr11:125442448 chr11:125442450 synonymous SNV . 0 23 hm5C_associated_SNPs_43057 0 0 1 0 1 STT3A-AS1 chr11:125442354 3'AG 125442354 Downstream 97bp
chrX 70519880 70519880 1 + C T UCEC 70519864 + 70519844 70519884 41 GGGCAATTGGTGGAACTCCTCCTGCATTCAACCGTGCAGCT GGGCAATTGGTGGAACTCCTCCTGCATTCAACCGTGTAGCT < 41bp 1 0.213249863456487 1 0.238839566707611 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70519864 chrX:70519880 nonsynonymous SNV 1.000 0 37 hm5C_associated_SNPs_43058 0 0 1 0 1 NONO chrX:70519792 3'AG 70519792 Downstream 89bp
chr8 95835775 95835775 1 + G T UCEC 95835768 + 95835748 95835788 41 AGGAGTCACTGTTGGAGAAACATCTGCGCAAGCCCTGCCCG AGGAGTCACTGTTGGAGAAACATCTGCTCAAGCCCTGCCCG < 41bp 1 0.476627556664673 1 0.2525714635849 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INTS8 ENSG00000164941 CDS Human protein_coding chr8:95835768 chr8:95835775 nonsynonymous SNV 0.998 0 28 hm5C_associated_SNPs_43060 0 0 1 0 1 INTS8 chr8:95835789 5'GT 95835789 Upstream 15bp
chr19 17313041 17313041 1 + C T UCEC 17313031 + 17313011 17313051 41 GAGCGTGGCCAGAAGGACACCAACCTGGTCCTCAACCTCTT GAGCGTGGCCAGAAGGACACCAACCTGGTCTTCAACCTCTT < 41bp 1 0.122996506636554 1 0.0811648368835449 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17313031 chr19:17313041 nonsynonymous SNV 0.997 5 31 hm5C_associated_SNPs_43061 0 0 1 0 1 MYO9B chr19:17313112 5'GT 17313112 Upstream 72bp
chr9 96420502 96420502 1 + C T UCEC 96420497 + 96420477 96420517 41 AAAATTCTCAATGGTGCTTTCCGATCGTGGACGAAGAAGCA AAAATTCTCAATGGTGCTTTCCGATTGTGGACGAAGAAGCA < 41bp 1 0.0944140541921921 1 0.566449463367462 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96420497 chr9:96420502 nonsynonymous SNV 0.981 0 26 hm5C_associated_SNPs_43062 0 0 1 0 2 PHF2 chr9:96420427 3'AG 96420427 Downstream 76bp
chr9 96420502 96420502 1 + C T UCEC 96420497 + 96420477 96420517 41 AAAATTCTCAATGGTGCTTTCCGATCGTGGACGAAGAAGCA AAAATTCTCAATGGTGCTTTCCGATTGTGGACGAAGAAGCA < 41bp 1 0.0944140541921921 1 0.566449463367462 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96420497 chr9:96420502 nonsynonymous SNV 0.981 0 26 hm5C_associated_SNPs_43062 0 0 1 0 2 PHF2 chr9:96420518 5'GT 96420518 Upstream 17bp
chr9 129458206 129458206 1 + C T UCEC 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGTCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG < 41bp 1 0.571220651168706 1 0.502475082874298 experiment 0.857558697662588 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458206 synonymous SNV . 0 9 hm5C_associated_SNPs_43063 0 0 0 0 3 LMX1B chr9:129458118 3'AG 129458118 Downstream 89bp
chr9 129458206 129458206 1 + C T UCEC 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGTCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG < 41bp 1 0.571220651168706 1 0.502475082874298 experiment 0.857558697662588 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458206 synonymous SNV . 0 9 hm5C_associated_SNPs_43063 0 0 0 0 3 LMX1B chr9:129458261 5'GT 129458261 Upstream 56bp
chr9 129458206 129458206 1 + C T UCEC 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGTCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG < 41bp 1 0.571220651168706 1 0.502475082874298 experiment 0.857558697662588 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458206 synonymous SNV . 0 9 hm5C_associated_SNPs_43063 0 0 0 0 3 LMX1B chr9:129458282 5'GT 129458282 Upstream 77bp
chr12 58109588 58109588 1 + C T UCEC 58109596 + 58109576 58109616 41 GACTACATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTA GACTACATCGATTGCGTGGACGAGCCCTTGTCCTGCTCTTA < 41bp 1 0.437772903798143 1 0.593159854412079 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OS9 ENSG00000135506 CDS Human protein_coding chr12:58109596 chr12:58109588 nonsynonymous SNV 0.523 4 13 hm5C_associated_SNPs_43066 0 0 1 0 1 OS9 chr12:58109543 3'AG 58109543 Downstream 46bp
chr12 58109588 58109588 1 + C T UCEC 58109602 + 58109582 58109622 41 ATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTATGTGCT ATCGATTGCGTGGACGAGCCCTTGTCCTGCTCTTATGTGCT < 41bp 1 0.365681737795736 1 0.0663501024246216 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient OS9 ENSG00000135506 CDS Human protein_coding chr12:58109602 chr12:58109588 nonsynonymous SNV 0.523 4 7 hm5C_associated_SNPs_43067 0 0 1 0 1 OS9 chr12:58109543 3'AG 58109543 Downstream 46bp
chr1 231401139 231401139 1 + C A UCEC 231401132 + 231401112 231401152 41 TGGCAATAAACTCTACTGGGCTGTATTCTCTGAATATGTAA TGGCAATAAACTCTACTGGGCTGTATTATCTGAATATGTAA < 41bp 1 0.380202021802445 1 0.044250100851059 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231401132 chr1:231401139 nonsynonymous SNV 0.993 2 28 hm5C_associated_SNPs_43068 0 0 1 0 1 GNPAT chr1:231401166 5'GT 231401166 Upstream 28bp
chr2 27157530 27157530 1 + C A UCEC 27157542 + 27157522 27157562 41 CCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG CCACGCGGATGCCTATGTCACGGTGCCTCCCCTGAGACTGG < 41bp 1 0.382431799582663 1 0.824084401130676 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157542 chr2:27157530 nonsynonymous SNV 0.418 5 9 hm5C_associated_SNPs_43080 0 0 0 0 2 DPYSL5 chr2:27157446 3'AG 27157446 Downstream 85bp
chr2 27157530 27157530 1 + C A UCEC 27157542 + 27157522 27157562 41 CCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG CCACGCGGATGCCTATGTCACGGTGCCTCCCCTGAGACTGG < 41bp 1 0.382431799582663 1 0.824084401130676 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157542 chr2:27157530 nonsynonymous SNV 0.418 5 9 hm5C_associated_SNPs_43080 0 0 0 0 2 DPYSL5 chr2:27157602 5'GT 27157602 Upstream 73bp
chr11 33079499 33079499 1 + G T UCEC 33079509 + 33079489 33079529 41 GGTCATACTAGACTGAGAAACCAGATAACAGAAGTCTTGGA GGTCATACTATACTGAGAAACCAGATAACAGAAGTCTTGGA < 41bp 1 0.549313546098402 1 0.549352049827576 experiment 0.901372907803195 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33079509 chr11:33079499 nonsynonymous SNV 0.995 4 11 hm5C_associated_SNPs_43081 0 0 1 0 1 TCP11L1 chr11:33079465 3'AG 33079465 Downstream 35bp
chr3 52233274 52233274 1 + G A UCEC 52233278 + 52233258 52233298 41 ATGGAGAGTGTTGTTCGCCGCTGCCCATTCTTATCCCGAGT ATGGAGAGTGTTGTTCACCGCTGCCCATTCTTATCCCGAGT < 41bp 1 0.36807640693166 1 0.232151746749878 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233278 chr3:52233274 nonsynonymous SNV 0.997 2 17 hm5C_associated_SNPs_43082 0 0 1 0 2 ALAS1 chr3:52233226 3'AG 52233226 Downstream 49bp
chr3 52233274 52233274 1 + G A UCEC 52233278 + 52233258 52233298 41 ATGGAGAGTGTTGTTCGCCGCTGCCCATTCTTATCCCGAGT ATGGAGAGTGTTGTTCACCGCTGCCCATTCTTATCCCGAGT < 41bp 1 0.36807640693166 1 0.232151746749878 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233278 chr3:52233274 nonsynonymous SNV 0.997 2 17 hm5C_associated_SNPs_43082 0 0 1 0 2 ALAS1 chr3:52233237 3'AG 52233237 Downstream 38bp
chr16 3712061 3712061 1 - G A UCEC 3712045 - 3712025 3712065 41 CCTGCGCATGCAGCAGCTGGCCAAGACCCAGGAGGAGCGCG CCTGTGCATGCAGCAGCTGGCCAAGACCCAGGAGGAGCGCG < 41bp 1 0.270404306243476 1 0.229632198810577 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712045 chr16:3712061 nonsynonymous SNV 0.988 4 5 hm5C_associated_SNPs_43088 0 0 1 0 2 TRAP1 chr16:3711988 5'GT 3711988 Upstream 74bp
chr16 3712061 3712061 1 - G A UCEC 3712045 - 3712025 3712065 41 CCTGCGCATGCAGCAGCTGGCCAAGACCCAGGAGGAGCGCG CCTGTGCATGCAGCAGCTGGCCAAGACCCAGGAGGAGCGCG < 41bp 1 0.270404306243476 1 0.229632198810577 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712045 chr16:3712061 nonsynonymous SNV 0.988 4 5 hm5C_associated_SNPs_43088 0 0 1 0 2 TRAP1 chr16:3712133 3'AG 3712133 Downstream 73bp
chr16 3712061 3712061 1 - G A UCEC 3712049 - 3712029 3712069 41 ACTTCCTGCGCATGCAGCAGCTGGCCAAGACCCAGGAGGAG ACTTCCTGTGCATGCAGCAGCTGGCCAAGACCCAGGAGGAG < 41bp 1 0.534217025315088 1 0.697154402732849 experiment 0.931565949369825 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712049 chr16:3712061 nonsynonymous SNV 0.988 4 9 hm5C_associated_SNPs_43089 0 0 1 0 2 TRAP1 chr16:3711988 5'GT 3711988 Upstream 74bp
chr16 3712061 3712061 1 - G A UCEC 3712049 - 3712029 3712069 41 ACTTCCTGCGCATGCAGCAGCTGGCCAAGACCCAGGAGGAG ACTTCCTGTGCATGCAGCAGCTGGCCAAGACCCAGGAGGAG < 41bp 1 0.534217025315088 1 0.697154402732849 experiment 0.931565949369825 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712049 chr16:3712061 nonsynonymous SNV 0.988 4 9 hm5C_associated_SNPs_43089 0 0 1 0 2 TRAP1 chr16:3712133 3'AG 3712133 Downstream 73bp
chr16 3712061 3712061 1 - G A UCEC 3712064 - 3712044 3712084 41 TGGGGGCTGCCCGCCACTTCCTGCGCATGCAGCAGCTGGCC TGGGGGCTGCCCGCCACTTCCTGTGCATGCAGCAGCTGGCC < 41bp 1 0.779576849297374 1 0.434764921665192 experiment 0.440846301405251 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712064 chr16:3712061 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_43090 0 0 1 0 2 TRAP1 chr16:3711988 5'GT 3711988 Upstream 74bp
chr16 3712061 3712061 1 - G A UCEC 3712064 - 3712044 3712084 41 TGGGGGCTGCCCGCCACTTCCTGCGCATGCAGCAGCTGGCC TGGGGGCTGCCCGCCACTTCCTGTGCATGCAGCAGCTGGCC < 41bp 1 0.779576849297374 1 0.434764921665192 experiment 0.440846301405251 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712064 chr16:3712061 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_43090 0 0 1 0 2 TRAP1 chr16:3712133 3'AG 3712133 Downstream 73bp
chr16 3712061 3712061 1 - G A UCEC 3712068 - 3712048 3712088 41 GAGATGGGGGCTGCCCGCCACTTCCTGCGCATGCAGCAGCT GAGATGGGGGCTGCCCGCCACTTCCTGTGCATGCAGCAGCT < 41bp 1 0.313267104817583 1 0.447661906480789 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712068 chr16:3712061 nonsynonymous SNV 0.988 4 28 hm5C_associated_SNPs_43091 0 0 1 0 2 TRAP1 chr16:3711988 5'GT 3711988 Upstream 74bp
chr16 3712061 3712061 1 - G A UCEC 3712068 - 3712048 3712088 41 GAGATGGGGGCTGCCCGCCACTTCCTGCGCATGCAGCAGCT GAGATGGGGGCTGCCCGCCACTTCCTGTGCATGCAGCAGCT < 41bp 1 0.313267104817583 1 0.447661906480789 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712068 chr16:3712061 nonsynonymous SNV 0.988 4 28 hm5C_associated_SNPs_43091 0 0 1 0 2 TRAP1 chr16:3712133 3'AG 3712133 Downstream 73bp
chr16 3712061 3712061 1 - G A UCEC 3712074 - 3712054 3712094 41 GTGCTGGAGATGGGGGCTGCCCGCCACTTCCTGCGCATGCA GTGCTGGAGATGGGGGCTGCCCGCCACTTCCTGTGCATGCA < 41bp 1 0.456860880066819 1 0.250251412391663 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712074 chr16:3712061 nonsynonymous SNV 0.988 4 34 hm5C_associated_SNPs_43092 0 0 1 0 2 TRAP1 chr16:3711988 5'GT 3711988 Upstream 74bp
chr16 3712061 3712061 1 - G A UCEC 3712074 - 3712054 3712094 41 GTGCTGGAGATGGGGGCTGCCCGCCACTTCCTGCGCATGCA GTGCTGGAGATGGGGGCTGCCCGCCACTTCCTGTGCATGCA < 41bp 1 0.456860880066819 1 0.250251412391663 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712074 chr16:3712061 nonsynonymous SNV 0.988 4 34 hm5C_associated_SNPs_43092 0 0 1 0 2 TRAP1 chr16:3712133 3'AG 3712133 Downstream 73bp
chr5 153760010 153760010 1 + C T UCEC 153760024 + 153760004 153760044 41 TCAGACCGCATTGCTCGGAACCGCAAGACCATTGTGTGCCC TCAGACTGCATTGCTCGGAACCGCAAGACCATTGTGTGCCC < 41bp 1 0.367002462863115 1 0.102664142847061 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153760024 chr5:153760010 nonsynonymous SNV 0.997 3 7 hm5C_associated_SNPs_43094 0 0 1 0 1 GALNT10 chr5:153760008 3'AG 153760008 Downstream 3bp
chr3 58112438 58112438 1 + G A UCEC 58112439 + 58112419 58112459 41 TGCTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTA TGCTGAGTACATTCCTTTCACACCGGGGGATTACGATGTTA < 41bp 1 0.502343391482786 1 0.0641097724437714 experiment 0.995313217034429 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112439 chr3:58112438 nonsynonymous SNV 0.901 1 20 hm5C_associated_SNPs_43095 0 0 1 0 1 FLNB chr3:58112489 5'GT 58112489 Upstream 52bp
chr3 58112438 58112438 1 + G A UCEC 58112441 + 58112421 58112461 41 CTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAAT CTGAGTACATTCCTTTCACACCGGGGGATTACGATGTTAAT < 41bp 1 0.267206813041801 1 0.355527222156525 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112441 chr3:58112438 nonsynonymous SNV 0.901 1 18 hm5C_associated_SNPs_43096 0 0 1 0 1 FLNB chr3:58112489 5'GT 58112489 Upstream 52bp
chr3 58112438 58112438 1 + G A UCEC 58112442 + 58112422 58112462 41 TGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAATA TGAGTACATTCCTTTCACACCGGGGGATTACGATGTTAATA < 41bp 1 0.49384393953538 1 0.857243537902832 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112442 chr3:58112438 nonsynonymous SNV 0.901 1 17 hm5C_associated_SNPs_43097 0 0 1 0 1 FLNB chr3:58112489 5'GT 58112489 Upstream 52bp
chr17 16332216 16332216 1 + C A UCEC 16332211 + 16332191 16332231 41 GTACCTGCCCCTGCTTGTGTCTGCGCTGGTGCTGGGCTGGC GTACCTGCCCCTGCTTGTGTCTGCGATGGTGCTGGGCTGGC < 41bp 1 0.686635247114527 1 0.441494882106781 experiment 0.626729505770947 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16332211 chr17:16332216 nonsynonymous SNV 0.684 4 26 hm5C_associated_SNPs_43098 0 0 0 0 2 TRPV2 chr17:16332131 3'AG 16332131 Downstream 86bp
chr17 16332216 16332216 1 + C A UCEC 16332211 + 16332191 16332231 41 GTACCTGCCCCTGCTTGTGTCTGCGCTGGTGCTGGGCTGGC GTACCTGCCCCTGCTTGTGTCTGCGATGGTGCTGGGCTGGC < 41bp 1 0.686635247114527 1 0.441494882106781 experiment 0.626729505770947 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16332211 chr17:16332216 nonsynonymous SNV 0.684 4 26 hm5C_associated_SNPs_43098 0 0 0 0 2 TRPV2 chr17:16332296 5'GT 16332296 Upstream 81bp
chr5 125820131 125820131 1 + C A UCEC 125820118 + 125820098 125820138 41 CCATGCGACAGAATCCCAAACAGTTCTGAATGTCTCCAAGG CCATGCGACAGAATCCCAAACAGTTCTGAATGTATCCAAGG < 41bp 1 0.24510686338492 1 0.109240710735321 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRAMD2B ENSG00000155324 CDS Human protein_coding chr5:125820118 chr5:125820131 synonymous SNV . 0 34 hm5C_associated_SNPs_43100 0 0 0 4 2 GRAMD2B chr5:125820091 3'AG 125820091 Downstream 41bp
chr5 125820131 125820131 1 + C A UCEC 125820118 + 125820098 125820138 41 CCATGCGACAGAATCCCAAACAGTTCTGAATGTCTCCAAGG CCATGCGACAGAATCCCAAACAGTTCTGAATGTATCCAAGG < 41bp 1 0.24510686338492 1 0.109240710735321 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRAMD2B ENSG00000155324 CDS Human protein_coding chr5:125820118 chr5:125820131 synonymous SNV . 0 34 hm5C_associated_SNPs_43100 0 0 0 4 2 GRAMD2B chr5:125820094 3'AG 125820094 Downstream 38bp
chr16 70564776 70564776 1 + G A UCEC 70564775 + 70564755 70564795 41 CATGTAGTTGGAGTAGATGTCGGATTTGAAAATCCAATGTT CATGTAGTTGGAGTAGATGTCAGATTTGAAAATCCAATGTT < 41bp 1 0.43148443546507 1 0.570985019207001 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70564775 chr16:70564776 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_43101 0 0 1 0 1 SF3B3 chr16:70564820 5'GT 70564820 Upstream 45bp
chr22 24717322 24717322 1 + G T UCEC 24717339 + 24717319 24717359 41 AAAGATTACGTGAACGTACCCGATTAAACCAGAGCAAAAAA AAATATTACGTGAACGTACCCGATTAAACCAGAGCAAAAAA < 41bp 1 0.0862471821403567 1 0.115522801876068 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SPECC1L ENSG00000100014;ENSG00000258555 CDS Human other chr22:24717339 chr22:24717322 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_43102 0 0 1 0 1 SPECC1L chr22:24717256 3'AG 24717256 Downstream 67bp
chr4 99341223 99341223 1 + T G UCEC 99341204 + 99341184 99341224 41 AAGATGTTATCAGCTGGGGTCACAGAGGCAGTTTTGAAATT AAGATGTTATCAGCTGGGGTCACAGAGGCAGTTTTGAAAGT < 41bp 1 0.272624628930754 1 0.395879566669464 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99341204 chr4:99341223 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_43103 0 0 1 0 2 RAP1GDS1 chr4:99341170 3'AG 99341170 Downstream 54bp
chr4 99341223 99341223 1 + T G UCEC 99341204 + 99341184 99341224 41 AAGATGTTATCAGCTGGGGTCACAGAGGCAGTTTTGAAATT AAGATGTTATCAGCTGGGGTCACAGAGGCAGTTTTGAAAGT < 41bp 1 0.272624628930754 1 0.395879566669464 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99341204 chr4:99341223 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_43103 0 0 1 0 2 RAP1GDS1 chr4:99341295 5'GT 99341295 Upstream 73bp
chr10 24816979 24816979 1 + C A UCEC 24816988 + 24816968 24817008 41 CAATACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTG CAATACCAAATATGGAGATGCCGCCAGCCACAGGCCCACTG < 41bp 1 0.130496763400815 1 0.182758897542953 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816988 chr10:24816979 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_43105 0 0 1 0 1 KIAA1217 chr10:24817048 5'GT 24817048 Upstream 70bp
chr10 24816979 24816979 1 + C A UCEC 24816992 + 24816972 24817012 41 ACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTGCCAA ACCAAATATGGAGATGCCGCCAGCCACAGGCCCACTGCCAA < 41bp 1 0.241748940114061 1 0.587010860443115 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816992 chr10:24816979 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_43106 0 0 1 0 1 KIAA1217 chr10:24817048 5'GT 24817048 Upstream 70bp
chr8 25323734 25323734 1 + G A UCEC 25323752 + 25323732 25323772 41 ACGAATATCAGCCTTCCAGTCAGCTTTTCACTCCATAAAGG ACAAATATCAGCCTTCCAGTCAGCTTTTCACTCCATAAAGG < 41bp 1 0.292883201664672 1 0.400552928447723 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CDCA2 ENSG00000184661 CDS Human protein_coding chr8:25323752 chr8:25323734 nonsynonymous SNV 0.417 0 3 hm5C_associated_SNPs_43111 0 0 1 0 1 CDCA2 chr8:25323691 3'AG 25323691 Downstream 44bp
chr12 93968548 93968548 1 + G T UCEC 93968564 + 93968544 93968584 41 AAAAGAGGCACCAGAAGGAACTTTCTTGATTAGAGATAGCT AAAATAGGCACCAGAAGGAACTTTCTTGATTAGAGATAGCT < 41bp 1 0.0514720783421116 1 0.109131187200546 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SOCS2 ENSG00000120833 CDS Human protein_coding chr12:93968564 chr12:93968548 stopgain 1.000 1 5 hm5C_associated_SNPs_43112 0 0 1 0 1 SOCS2 chr12:93968498 3'AG 93968498 Downstream 51bp
chr22 42049642 42049642 1 + G A UCEC 42049622 + 42049602 42049642 41 ACACACCCCGCAGGAACATCCCTCCTTATTTTGTGGCTTTG ACACACCCCGCAGGAACATCCCTCCTTATTTTGTGGCTTTA < 41bp 1 0.0714755506589781 1 0.159080982208252 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42049622 chr22:42049642 synonymous SNV . 0 41 hm5C_associated_SNPs_43113 0 0 1 0 1 XRCC6 chr22:42049694 5'GT 42049694 Upstream 53bp
chr22 42049642 42049642 1 + G A UCEC 42049626 + 42049606 42049646 41 ACCCCGCAGGAACATCCCTCCTTATTTTGTGGCTTTGGTGC ACCCCGCAGGAACATCCCTCCTTATTTTGTGGCTTTAGTGC < 41bp 1 0.14151889958761 1 0.0781862139701843 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42049626 chr22:42049642 synonymous SNV . 0 37 hm5C_associated_SNPs_43114 0 0 1 0 1 XRCC6 chr22:42049694 5'GT 42049694 Upstream 53bp
chr2 36691766 36691766 1 + G T UCEC 36691763 + 36691743 36691783 41 CTCTCGTGGCGATGGGACACCTGGAAAGTGCTGTGATGTCT CTCTCGTGGCGATGGGACACCTGTAAAGTGCTGTGATGTCT < 41bp 1 0.570588599517837 1 0.289806991815567 experiment 0.858822800964326 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36691763 chr2:36691766 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_43116 0 0 1 0 2 CRIM1 chr2:36691677 3'AG 36691677 Downstream 90bp
chr2 36691766 36691766 1 + G T UCEC 36691763 + 36691743 36691783 41 CTCTCGTGGCGATGGGACACCTGGAAAGTGCTGTGATGTCT CTCTCGTGGCGATGGGACACCTGTAAAGTGCTGTGATGTCT < 41bp 1 0.570588599517837 1 0.289806991815567 experiment 0.858822800964326 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36691763 chr2:36691766 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_43116 0 0 1 0 2 CRIM1 chr2:36691798 5'GT 36691798 Upstream 33bp
chr2 160623812 160623812 1 + G A UCEC 160623826 + 160623806 160623846 41 GATTCCGAAGAAGACGGAGACCATAACAGGACATTTGATAT GATTCCAAAGAAGACGGAGACCATAACAGGACATTTGATAT < 41bp 1 0.298639352569206 1 0.182178944349289 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH7 ENSG00000136536 CDS Human protein_coding chr2:160623826 chr2:160623812 nonsynonymous SNV 0.976 1 7 hm5C_associated_SNPs_43117 0 0 1 0 1 MARCH7 chr2:160623795 3'AG 160623795 Downstream 18bp
chr15 50782548 50782548 1 + C A UCEC 50782564 + 50782544 50782584 41 TCATCTGCACCTCCTTCCACCCCTCCAACTCATAAAGCCAA TCATATGCACCTCCTTCCACCCCTCCAACTCATAAAGCCAA < 41bp 1 0.0467188566814908 1 0.177874207496643 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USP8 ENSG00000138592 CDS Human protein_coding chr15:50782564 chr15:50782548 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_43119 0 0 1 0 1 USP8 chr15:50782460 3'AG 50782460 Downstream 89bp
chr5 162898226 162898226 1 + T G UCEC 162898209 + 162898189 162898229 41 AGTTTTCTGAAAATGGTAACCAGAAGAATTTGAGAATTCTA AGTTTTCTGAAAATGGTAACCAGAAGAATTTGAGAATGCTA < 41bp 1 0.689574506550189 1 0.788505077362061 experiment 0.620850986899621 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMMR ENSG00000072571 CDS Human protein_coding chr5:162898209 chr5:162898226 nonsynonymous SNV 0.995 1 38 hm5C_associated_SNPs_43120 0 0 1 0 1 HMMR chr5:162898191 3'AG 162898191 Downstream 36bp
chr3 123983489 123983489 1 + C A UCEC 123983506 + 123983486 123983526 41 CTTCTGGCAGAAACAGAAGACCAACTTTGGCAGCTCCAAAT CTTATGGCAGAAACAGAAGACCAACTTTGGCAGCTCCAAAT < 41bp 1 0.0477334672767652 1 0.0508805215358734 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KALRN ENSG00000160145 CDS Human protein_coding chr3:123983506 chr3:123983489 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_43121 0 0 0 0 1 KALRN chr3:123983537 5'GT 123983537 Upstream 49bp
chr17 30372815 30372815 1 + T C UCEC 30372808 + 30372788 30372828 41 AGTCAAGCTGCATTGCAACACTGCATGTCTGACTAACAGCA AGTCAAGCTGCATTGCAACACTGCATGCCTGACTAACAGCA < 41bp 1 0.690433157120638 1 0.208802282810211 experiment 0.619133685758725 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRRC37B ENSG00000185158 CDS Human protein_coding chr17:30372808 chr17:30372815 synonymous SNV . 0 28 hm5C_associated_SNPs_43122 0 0 1 0 2 LRRC37B chr17:30372719 3'AG 30372719 Downstream 97bp
chr17 30372815 30372815 1 + T C UCEC 30372808 + 30372788 30372828 41 AGTCAAGCTGCATTGCAACACTGCATGTCTGACTAACAGCA AGTCAAGCTGCATTGCAACACTGCATGCCTGACTAACAGCA < 41bp 1 0.690433157120638 1 0.208802282810211 experiment 0.619133685758725 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRRC37B ENSG00000185158 CDS Human protein_coding chr17:30372808 chr17:30372815 synonymous SNV . 0 28 hm5C_associated_SNPs_43122 0 0 1 0 2 LRRC37B chr17:30372837 5'GT 30372837 Upstream 23bp
chr19 8503325 8503325 1 + G T UCEC 8503319 + 8503299 8503339 41 TACTCCGAGTGGAGAAAGACCAACCAGAAAGTTCGCCTGAA TACTCCGAGTGGAGAAAGACCAACCATAAAGTTCGCCTGAA < 41bp 1 0.46640472378872 1 0.0869563519954681 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8503319 chr19:8503325 nonsynonymous SNV 0.998 4 27 hm5C_associated_SNPs_43125 0 0 0 0 1 MARCH2 chr19:8503272 3'AG 8503272 Downstream 54bp
chr12 22214331 22214331 1 + C A UCEC 22214315 + 22214295 22214335 41 ACATTTATGTATCAGGAGACCAAAAAGAAATAATATCTTAT ACATTTATGTATCAGGAGACCAAAAAGAAATAATATATTAT < 41bp 1 0.364223069279066 1 0.527245461940765 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22214315 chr12:22214331 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_43126 0 0 1 0 1 CMAS chr12:22214386 5'GT 22214386 Upstream 56bp
chr2 37475369 37475369 1 + G T UCEC 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGATA < 41bp 1 0.40909498303059 1 0.480537563562393 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475369 nonsynonymous SNV 0.997 3 40 hm5C_associated_SNPs_43127 0 0 1 1 1 NDUFAF7 chr2:37475278 3'AG 37475278 Downstream 92bp
chr2 37475369 37475369 1 + G T UCEC 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGATAT < 41bp 1 0.421939278003884 1 0.397640526294708 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475369 nonsynonymous SNV 0.997 3 39 hm5C_associated_SNPs_43128 0 0 1 1 1 NDUFAF7 chr2:37475278 3'AG 37475278 Downstream 92bp
chr1 6271147 6271147 1 + C T UCEC 6271142 + 6271122 6271162 41 GCCACTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTG GCCACTGCTGCTGCTGGGGCCACGTTGGGTGGCAGCTGCTG < 41bp 1 0.456523659648011 1 0.38383424282074 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF207 ENSG00000158286 CDS Human protein_coding chr1:6271142 chr1:6271147 nonsynonymous SNV 0.001 2 26 hm5C_associated_SNPs_43129 0 0 1 0 2 RNF207 chr1:6271081 3'AG 6271081 Downstream 67bp
chr1 6271147 6271147 1 + C T UCEC 6271142 + 6271122 6271162 41 GCCACTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTG GCCACTGCTGCTGCTGGGGCCACGTTGGGTGGCAGCTGCTG < 41bp 1 0.456523659648011 1 0.38383424282074 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF207 ENSG00000158286 CDS Human protein_coding chr1:6271142 chr1:6271147 nonsynonymous SNV 0.001 2 26 hm5C_associated_SNPs_43129 0 0 1 0 2 RNF207 chr1:6271178 5'GT 6271178 Upstream 32bp
chr14 100563932 100563932 1 + G T UCEC 100563942 + 100563922 100563962 41 AAGTAAAGAAGAGGCAACCACGTTCTCCAATGCAATGCTGT AAGTAAAGAATAGGCAACCACGTTCTCCAATGCAATGCTGT < 41bp 1 0.0259239606008869 1 0.0858523845672607 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EVL ENSG00000196405 CDS Human protein_coding chr14:100563942 chr14:100563932 stopgain 0.970 1 11 hm5C_associated_SNPs_43130 0 0 0 0 1 EVL chr14:100563995 5'GT 100563995 Upstream 64bp
chr20 44526710 44526710 1 + G A UCEC 44526703 + 44526683 44526723 41 GACAGCGGGGAGCAGATTGCCGGCTTCGTGAAGGAGTTCTC GACAGCGGGGAGCAGATTGCCGGCTTCATGAAGGAGTTCTC < 41bp 1 0.666038357846928 1 0.704003036022186 experiment 0.667923284306144 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44526703 chr20:44526710 nonsynonymous SNV 0.844 5 28 hm5C_associated_SNPs_43132 0 0 1 2 2 CTSA chr20:44526644 3'AG 44526644 Downstream 67bp
chr20 44526710 44526710 1 + G A UCEC 44526703 + 44526683 44526723 41 GACAGCGGGGAGCAGATTGCCGGCTTCGTGAAGGAGTTCTC GACAGCGGGGAGCAGATTGCCGGCTTCATGAAGGAGTTCTC < 41bp 1 0.666038357846928 1 0.704003036022186 experiment 0.667923284306144 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44526703 chr20:44526710 nonsynonymous SNV 0.844 5 28 hm5C_associated_SNPs_43132 0 0 1 2 2 CTSA chr20:44526748 5'GT 44526748 Upstream 39bp
chr2 86360307 86360307 1 + G T UCEC 86360303 + 86360283 86360323 41 TTTTTGCCTTCATCACAGTTCCAAGTTCTTCGATTTGATTT TTTTTGCCTTCATCACAGTTCCAATTTCTTCGATTTGATTT < 41bp 1 0.0459322511967172 1 0.0226196050643921 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86360303 chr2:86360307 nonsynonymous SNV 0.530 1 25 hm5C_associated_SNPs_43134 0 0 1 0 2 PTCD3 chr2:86360301 3'AG 86360301 Downstream 7bp
chr2 86360307 86360307 1 + G T UCEC 86360303 + 86360283 86360323 41 TTTTTGCCTTCATCACAGTTCCAAGTTCTTCGATTTGATTT TTTTTGCCTTCATCACAGTTCCAATTTCTTCGATTTGATTT < 41bp 1 0.0459322511967172 1 0.0226196050643921 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86360303 chr2:86360307 nonsynonymous SNV 0.530 1 25 hm5C_associated_SNPs_43134 0 0 1 0 2 PTCD3 chr2:86360379 5'GT 86360379 Upstream 73bp
chr4 146463817 146463817 1 + G A UCEC 146463820 + 146463800 146463840 41 TGGACACAAACATGATGGCGCCTCCCCTGCCCTCAGAAATC TGGACACAAACATGATGACGCCTCCCCTGCCCTCAGAAATC < 41bp 1 0.0294126849991915 1 0.0942295491695404 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146463820 chr4:146463817 nonsynonymous SNV 0.990 2 18 hm5C_associated_SNPs_43135 0 0 0 0 2 SMAD1 chr4:146463734 3'AG 146463734 Downstream 84bp
chr4 146463817 146463817 1 + G A UCEC 146463820 + 146463800 146463840 41 TGGACACAAACATGATGGCGCCTCCCCTGCCCTCAGAAATC TGGACACAAACATGATGACGCCTCCCCTGCCCTCAGAAATC < 41bp 1 0.0294126849991915 1 0.0942295491695404 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146463820 chr4:146463817 nonsynonymous SNV 0.990 2 18 hm5C_associated_SNPs_43135 0 0 0 0 2 SMAD1 chr4:146463850 5'GT 146463850 Upstream 34bp
chrX 47083814 47083814 1 + C A UCEC 47083794 + 47083774 47083814 41 CTGCCACCAGAGATTGTGCACGAGGACTTGAAGATGGGGTC CTGCCACCAGAGATTGTGCACGAGGACTTGAAGATGGGGTA < 41bp 1 0.677259785200945 1 0.902820408344269 experiment 0.64548042959811 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CDK16 ENSG00000102225 CDS Human other chrX:47083794 chrX:47083814 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_43136 0 0 1 0 1 CDK16 chrX:47083784 3'AG 47083784 Downstream 31bp
chr4 81118811 81118811 1 + C A UCEC 81118826 + 81118806 81118846 41 CACCTCTTGACATGGAAATACACTGATACAATAGGCAAAAG CACCTATTGACATGGAAATACACTGATACAATAGGCAAAAG < 41bp 1 0.382101159184393 1 0.0856525301933289 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRDM8 ENSG00000152784 UTR5 Human protein_coding chr4:81118826 chr4:81118811 . . 0 6 hm5C_associated_SNPs_43137 0 0 0 0 1 PRDM8 chr4:81118779 3'AG 81118779 Downstream 33bp
chr7 127569264 127569264 1 + C A UCEC 127569246 + 127569226 127569266 41 TCTTTTCTCCATCAGGATACCCAAAAAGCAAAGCAGTTCCT TCTTTTCTCCATCAGGATACCCAAAAAGCAAAGCAGTTACT < 41bp 1 0.0741181303725526 1 0.175528883934021 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SND1 ENSG00000197157 CDS Human protein_coding chr7:127569246 chr7:127569264 nonsynonymous SNV 0.995 1 39 hm5C_associated_SNPs_43138 0 0 1 0 1 SND1 chr7:127569241 3'AG 127569241 Downstream 24bp
chr6 43155547 43155547 1 + C A UCEC 43155540 + 43155520 43155560 41 CTCAGTAGTCGATTTGAGGGCAGCACTCTCAATGACCTGCT CTCAGTAGTCGATTTGAGGGCAGCACTATCAATGACCTGCT < 41bp 1 0.530923498273249 1 0.170821785926819 experiment 0.938153003453502 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43155540 chr6:43155547 nonsynonymous SNV 0.985 2 28 hm5C_associated_SNPs_43141 0 0 0 0 1 CUL9 chr6:43155451 3'AG 43155451 Downstream 97bp
chr4 20568893 20568893 1 + G T UCEC 20568888 + 20568868 20568908 41 TTTGAATTAATTTTCAGGTCCTGTGGATGTCAATATTCTAG TTTGAATTAATTTTCAGGTCCTGTGTATGTCAATATTCTAG < 41bp 1 0.0675374722687087 1 0.0650830864906311 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568888 chr4:20568893 nonsynonymous SNV 0.998 4 26 hm5C_associated_SNPs_43142 0 0 0 0 1 SLIT2 chr4:20568885 3'AG 20568885 Downstream 9bp
chr6 117037417 117037417 1 + G T UCEC 117037411 + 117037391 117037431 41 AAATTCAAACAGACTCACAACAACAAGAAATGCCGTGTGGG AAATTCAAACAGACTCACAACAACAATAAATGCCGTGTGGG < 41bp 1 0.580246426854186 1 0.434971868991852 experiment 0.839507146291629 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KPNA5 ENSG00000196911 CDS Human protein_coding chr6:117037411 chr6:117037417 nonsynonymous SNV 0.999 4 27 hm5C_associated_SNPs_43143 0 0 1 0 2 KPNA5 chr6:117037382 3'AG 117037382 Downstream 36bp
chr6 117037417 117037417 1 + G T UCEC 117037411 + 117037391 117037431 41 AAATTCAAACAGACTCACAACAACAAGAAATGCCGTGTGGG AAATTCAAACAGACTCACAACAACAATAAATGCCGTGTGGG < 41bp 1 0.580246426854186 1 0.434971868991852 experiment 0.839507146291629 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KPNA5 ENSG00000196911 CDS Human protein_coding chr6:117037411 chr6:117037417 nonsynonymous SNV 0.999 4 27 hm5C_associated_SNPs_43143 0 0 1 0 2 KPNA5 chr6:117037481 5'GT 117037481 Upstream 65bp
chr16 5122980 5122980 1 + G T UCEC 5122983 + 5122963 5123003 41 CATGATGAGCTCTTGCAGAACAACAGAATTCAGATTGTGGG CATGATGAGCTCTTGCATAACAACAGAATTCAGATTGTGGG < 41bp 1 0.534935672640138 1 0.190896213054657 experiment 0.930128654719723 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5122983 chr16:5122980 nonsynonymous SNV 0.536 1 18 hm5C_associated_SNPs_43144 0 0 1 0 2 ALG1 chr16:5122952 3'AG 5122952 Downstream 29bp
chr16 5122980 5122980 1 + G T UCEC 5122983 + 5122963 5123003 41 CATGATGAGCTCTTGCAGAACAACAGAATTCAGATTGTGGG CATGATGAGCTCTTGCATAACAACAGAATTCAGATTGTGGG < 41bp 1 0.534935672640138 1 0.190896213054657 experiment 0.930128654719723 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5122983 chr16:5122980 nonsynonymous SNV 0.536 1 18 hm5C_associated_SNPs_43144 0 0 1 0 2 ALG1 chr16:5123029 5'GT 5123029 Upstream 50bp
chr10 71855414 71855414 1 + C T UCEC 71855433 + 71855413 71855453 41 TCCTTAACCCAGAGTGACATCAGCCATATTGGCTCCATGAG TTCTTAACCCAGAGTGACATCAGCCATATTGGCTCCATGAG < 41bp 1 0.41790421342264 1 0.223039299249649 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71855433 chr10:71855414 nonsynonymous SNV 0.971 4 2 hm5C_associated_SNPs_43145 0 0 0 2 2 H2AFY2 chr10:71855410 3'AG 71855410 Downstream 5bp
chr10 71855414 71855414 1 + C T UCEC 71855433 + 71855413 71855453 41 TCCTTAACCCAGAGTGACATCAGCCATATTGGCTCCATGAG TTCTTAACCCAGAGTGACATCAGCCATATTGGCTCCATGAG < 41bp 1 0.41790421342264 1 0.223039299249649 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71855433 chr10:71855414 nonsynonymous SNV 0.971 4 2 hm5C_associated_SNPs_43145 0 0 0 2 2 H2AFY2 chr10:71855509 5'GT 71855509 Upstream 96bp
chr5 122435575 122435575 1 + G A UCEC 122435560 + 122435540 122435580 41 ATCTGCGCGGCGCAGAGGATCCAGCAAGGCACCTGGATTGG ATCTGCGCGGCGCAGAGGATCCAGCAAGGCACCTGAATTGG < 41bp 1 0.279177232563004 1 0.113263726234436 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM6 ENSG00000061455 CDS Human protein_coding chr5:122435560 chr5:122435575 stopgain 1.000 1 36 hm5C_associated_SNPs_43146 0 0 0 0 1 PRDM6 chr5:122435656 5'GT 122435656 Upstream 82bp
chr12 124074982 124074982 1 + G A UCEC 124074965 + 124074945 124074985 41 GTAAAGCACGAACAGGAATACATGGAAGTCCGGGAGAGAAT GTAAAGCACGAACAGGAATACATGGAAGTCCGGGAGAAAAT < 41bp 1 0.626277821051376 1 0.236889630556107 experiment 0.747444357897247 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED2 ENSG00000086598 CDS Human protein_coding chr12:124074965 chr12:124074982 nonsynonymous SNV 0.997 1 38 hm5C_associated_SNPs_43147 0 0 1 0 2 TMED2 chr12:124074889 3'AG 124074889 Downstream 94bp
chr12 124074982 124074982 1 + G A UCEC 124074965 + 124074945 124074985 41 GTAAAGCACGAACAGGAATACATGGAAGTCCGGGAGAGAAT GTAAAGCACGAACAGGAATACATGGAAGTCCGGGAGAAAAT < 41bp 1 0.626277821051376 1 0.236889630556107 experiment 0.747444357897247 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED2 ENSG00000086598 CDS Human protein_coding chr12:124074965 chr12:124074982 nonsynonymous SNV 0.997 1 38 hm5C_associated_SNPs_43147 0 0 1 0 2 TMED2 chr12:124074996 5'GT 124074996 Upstream 15bp
chr18 8635555 8635555 1 + C A UCEC 8635557 + 8635537 8635577 41 TCAGAAGATGCAGAGCTTCTCTTAGTTGGAAATAAGTTGGA TCAGAAGATGCAGAGCTTATCTTAGTTGGAAATAAGTTGGA < 41bp 1 0.514228758067397 1 0.4312943816185 experiment 0.971542483865206 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RAB12 ENSG00000206418 CDS Human protein_coding chr18:8635557 chr18:8635555 nonsynonymous SNV 0.988 0 19 hm5C_associated_SNPs_43148 0 0 1 0 2 RAB12 chr18:8635531 3'AG 8635531 Downstream 25bp
chr18 8635555 8635555 1 + C A UCEC 8635557 + 8635537 8635577 41 TCAGAAGATGCAGAGCTTCTCTTAGTTGGAAATAAGTTGGA TCAGAAGATGCAGAGCTTATCTTAGTTGGAAATAAGTTGGA < 41bp 1 0.514228758067397 1 0.4312943816185 experiment 0.971542483865206 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RAB12 ENSG00000206418 CDS Human protein_coding chr18:8635557 chr18:8635555 nonsynonymous SNV 0.988 0 19 hm5C_associated_SNPs_43148 0 0 1 0 2 RAB12 chr18:8635620 5'GT 8635620 Upstream 66bp
chr6 116565144 116565144 1 + C A UCEC 116565147 + 116565127 116565167 41 TGGCTACTATCCAAATCCTCCACTGGTCTTATCAAGTGATG TGGCTACTATCCAAATCATCCACTGGTCTTATCAAGTGATG < 41bp 1 0.263187579325173 1 0.0264369249343872 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NT5DC1 ENSG00000178425 CDS Human protein_coding chr6:116565147 chr6:116565144 nonsynonymous SNV 0.101 2 18 hm5C_associated_SNPs_43149 0 0 1 0 1 NT5DC1 chr6:116565072 3'AG 116565072 Downstream 73bp
chr3 4776945 4776945 1 + C T UCEC 4776929 + 4776909 4776949 41 TCACCTTGACAAGGAGGGGGCTTCCAATCTAGTTATCGACC TCACCTTGACAAGGAGGGGGCTTCCAATCTAGTTATTGACC < 41bp 1 0.0183997558300573 1 0.0732423961162567 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4776929 chr3:4776945 synonymous SNV . 0 37 hm5C_associated_SNPs_43150 0 0 1 0 2 ITPR1 chr3:4776848 3'AG 4776848 Downstream 98bp
chr3 4776945 4776945 1 + C T UCEC 4776929 + 4776909 4776949 41 TCACCTTGACAAGGAGGGGGCTTCCAATCTAGTTATCGACC TCACCTTGACAAGGAGGGGGCTTCCAATCTAGTTATTGACC < 41bp 1 0.0183997558300573 1 0.0732423961162567 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4776929 chr3:4776945 synonymous SNV . 0 37 hm5C_associated_SNPs_43150 0 0 1 0 2 ITPR1 chr3:4777038 5'GT 4777038 Upstream 94bp
chr7 142460406 142460406 1 + G T UCEC 142460388 + 142460368 142460408 41 AGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA AGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAATGA < 41bp 1 0.14547036831502 1 0.0794779360294342 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460388 chr7:142460406 nonsynonymous SNV 0.982 5 39 hm5C_associated_SNPs_43151 0 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 13bp
chr7 142460406 142460406 1 + G T UCEC 142460391 + 142460371 142460411 41 AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAATGATTC < 41bp 1 0.0282791623997072 1 0.0588495135307312 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460391 chr7:142460406 nonsynonymous SNV 0.982 5 36 hm5C_associated_SNPs_43152 0 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 13bp
chr7 142460406 142460406 1 + G T UCEC 142460392 + 142460372 142460412 41 ACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA ACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAATGATTCA < 41bp 1 0.605983330382988 1 0.383349508047104 experiment 0.788033339234025 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460392 chr7:142460406 nonsynonymous SNV 0.982 5 35 hm5C_associated_SNPs_43153 0 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 13bp
chr7 142460406 142460406 1 + G T UCEC 142460403 + 142460383 142460423 41 GTGGGCTTCCTTGAGGGAGGCAAGGATTCATGTCAGGTGAT GTGGGCTTCCTTGAGGGAGGCAATGATTCATGTCAGGTGAT < 41bp 1 0.166916337613516 1 0.177618324756622 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460403 chr7:142460406 nonsynonymous SNV 0.982 5 24 hm5C_associated_SNPs_43154 0 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 13bp
chr7 142460406 142460406 1 + G T UCEC 142460411 + 142460391 142460431 41 CCTTGAGGGAGGCAAGGATTCATGTCAGGTGATTTGACCAA CCTTGAGGGAGGCAATGATTCATGTCAGGTGATTTGACCAA < 41bp 1 0.508705883064127 1 0.189401477575302 experiment 0.982588233871745 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460411 chr7:142460406 nonsynonymous SNV 0.982 5 16 hm5C_associated_SNPs_43155 0 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 13bp
chr7 142460406 142460406 1 + G T UCEC 142460416 + 142460396 142460436 41 AGGGAGGCAAGGATTCATGTCAGGTGATTTGACCAACCCTT AGGGAGGCAATGATTCATGTCAGGTGATTTGACCAACCCTT < 41bp 1 0.56157756531931 1 0.765519261360168 experiment 0.87684486936138 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460416 chr7:142460406 nonsynonymous SNV 0.982 5 11 hm5C_associated_SNPs_43156 0 0 0 0 1 PRSS1 chr7:142460418 5'GT 142460418 Upstream 13bp
chr1 24782719 24782719 1 + C T UCEC 24782707 + 24782687 24782727 41 GGGAACCTGCAGCTTGACTACCCCATCTTCTACGTGATGTT GGGAACCTGCAGCTTGACTACCCCATCTTCTATGTGATGTT < 41bp 1 0.439848832723351 1 0.200465828180313 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NIPAL3 ENSG00000001461 CDS Human protein_coding chr1:24782707 chr1:24782719 synonymous SNV . 0 33 hm5C_associated_SNPs_43157 0 0 1 0 1 NIPAL3 chr1:24782763 5'GT 24782763 Upstream 45bp
chr16 30664155 30664155 1 + G A UCEC 30664142 + 30664122 30664162 41 TGCCTCGCCACCCCGGCAGGCCGGGTGGTCCTCGCAGGCCA TGCCTCGCCACCCCGGCAGGCCGGGTGGTCCTCACAGGCCA < 41bp 1 0.685568897751901 1 0.543845474720001 experiment 0.628862204496197 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRR14 ENSG00000156858 CDS Human protein_coding chr16:30664142 chr16:30664155 synonymous SNV . 0 34 hm5C_associated_SNPs_43158 0 0 1 0 1 PRR14 chr16:30664163 5'GT 30664163 Upstream 9bp
chr5 140084151 140084151 1 + G T UCEC 140084145 + 140084125 140084165 41 TTGAGGAAAGGATGAAGGAGCTCAGAGAAGAGGTAAGGGTC TTGAGGAAAGGATGAAGGAGCTCAGATAAGAGGTAAGGGTC < 41bp 1 0.618048449423046 1 0.493384122848511 experiment 0.763903101153908 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084145 chr5:140084151 stopgain 0.999 1 27 hm5C_associated_SNPs_43160 0 0 1 0 1 ZMAT2 chr5:140084156 5'GT 140084156 Upstream 6bp
chr5 140084151 140084151 1 + G T UCEC 140084147 + 140084127 140084167 41 GAGGAAAGGATGAAGGAGCTCAGAGAAGAGGTAAGGGTCTC GAGGAAAGGATGAAGGAGCTCAGATAAGAGGTAAGGGTCTC < 41bp 1 0.632416496262203 1 0.41048589348793 experiment 0.735167007475593 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084147 chr5:140084151 stopgain 0.999 1 25 hm5C_associated_SNPs_43161 0 0 1 0 1 ZMAT2 chr5:140084156 5'GT 140084156 Upstream 6bp
chr6 33657073 33657073 1 + C T UCEC 33657075 + 33657055 33657095 41 CCTCATCTGCTTCTCCATCGCGGCCCTGTTCACCAAGCGCT CCTCATCTGCTTCTCCATTGCGGCCCTGTTCACCAAGCGCT < 41bp 1 0.193716200744171 1 0.47996786236763 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33657075 chr6:33657073 synonymous SNV . 0 19 hm5C_associated_SNPs_43162 0 0 1 0 1 ITPR3 chr6:33657015 3'AG 33657015 Downstream 59bp
chr17 48631725 48631725 1 + G A UCEC 48631727 + 48631707 48631747 41 TGTGTGTGCCTATTGACCGCCTTTTCCGAGCGCATGCGTCG TGTGTGTGCCTATTGACCACCTTTTCCGAGCGCATGCGTCG < 41bp 1 0.0545949277485065 1 0.0153005719184875 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPATA20 ENSG00000006282 CDS Human protein_coding chr17:48631727 chr17:48631725 nonsynonymous SNV 0.779 1 19 hm5C_associated_SNPs_43163 0 0 1 0 1 SPATA20 chr17:48631811 5'GT 48631811 Upstream 87bp
chrX 107097884 107097884 1 + G A UCEC 107097904 + 107097884 107097924 41 GAACTAGAAAATCAAATGGCCAAACTAATACAGATCTGCCA AAACTAGAAAATCAAATGGCCAAACTAATACAGATCTGCCA < 41bp 1 0.112909546125481 1 0.126875847578049 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MID2 ENSG00000080561 CDS Human protein_coding chrX:107097904 chrX:107097884 nonsynonymous SNV 0.991 3 1 hm5C_associated_SNPs_43164 0 0 0 0 2 MID2 chrX:107097839 3'AG 107097839 Downstream 46bp
chrX 107097884 107097884 1 + G A UCEC 107097904 + 107097884 107097924 41 GAACTAGAAAATCAAATGGCCAAACTAATACAGATCTGCCA AAACTAGAAAATCAAATGGCCAAACTAATACAGATCTGCCA < 41bp 1 0.112909546125481 1 0.126875847578049 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MID2 ENSG00000080561 CDS Human protein_coding chrX:107097904 chrX:107097884 nonsynonymous SNV 0.991 3 1 hm5C_associated_SNPs_43164 0 0 0 0 2 MID2 chrX:107097934 5'GT 107097934 Upstream 51bp
chr5 7885875 7885875 1 + C A UCEC 7885861 + 7885841 7885881 41 GATGCCTTCAGCGTGATCTGCCCTAACAGTGATTCTGAGGT GATGCCTTCAGCGTGATCTGCCCTAACAGTGATTATGAGGT < 41bp 1 0.210390996606038 1 0.0861481726169586 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885861 chr5:7885875 nonsynonymous SNV 0.802 1 35 hm5C_associated_SNPs_43165 0 0 1 0 1 MTRR chr5:7885814 3'AG 7885814 Downstream 62bp
chr5 7885875 7885875 1 + C A UCEC 7885862 + 7885842 7885882 41 ATGCCTTCAGCGTGATCTGCCCTAACAGTGATTCTGAGGTA ATGCCTTCAGCGTGATCTGCCCTAACAGTGATTATGAGGTA < 41bp 1 0.186971433818721 1 0.139536172151566 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885862 chr5:7885875 nonsynonymous SNV 0.802 1 34 hm5C_associated_SNPs_43166 0 0 1 0 1 MTRR chr5:7885814 3'AG 7885814 Downstream 62bp
chr5 7885875 7885875 1 + C A UCEC 7885863 + 7885843 7885883 41 TGCCTTCAGCGTGATCTGCCCTAACAGTGATTCTGAGGTAC TGCCTTCAGCGTGATCTGCCCTAACAGTGATTATGAGGTAC < 41bp 1 0.271754026761663 1 0.0892837941646576 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885863 chr5:7885875 nonsynonymous SNV 0.802 1 33 hm5C_associated_SNPs_43167 0 0 1 0 1 MTRR chr5:7885814 3'AG 7885814 Downstream 62bp
chr2 70096887 70096887 1 + G A UCEC 70096880 + 70096860 70096900 41 CGTTGGACAGGTTTTAACTTCGGCTTCGACCTACTTGTAAC CGTTGGACAGGTTTTAACTTCGGCTTCAACCTACTTGTAAC < 41bp 1 0.548186443547156 1 0.456648886203766 experiment 0.903627112905687 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GMCL1 ENSG00000087338 CDS Human protein_coding chr2:70096880 chr2:70096887 nonsynonymous SNV 0.940 3 28 hm5C_associated_SNPs_43169 0 0 1 0 1 GMCL1 chr2:70096851 3'AG 70096851 Downstream 37bp
chr2 242683168 242683168 1 + G A UCEC 242683180 + 242683160 242683200 41 CAACCAACGCTGGAGGCCTGCGGTTTCTTCGATATGGCTCA CAACCAACACTGGAGGCCTGCGGTTTCTTCGATATGGCTCA < 41bp 1 0.285014815036779 1 0.652176916599274 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242683180 chr2:242683168 nonsynonymous SNV 0.013 5 9 hm5C_associated_SNPs_43170 0 0 1 0 1 D2HGDH chr2:242683230 5'GT 242683230 Upstream 63bp
chr1 20224099 20224099 1 + G A UCEC 20224116 + 20224096 20224136 41 TACGACAGTGTTCGGAGGATCAATGACAACTCAGAGGCACC TACAACAGTGTTCGGAGGATCAATGACAACTCAGAGGCACC < 41bp 1 0.247998536123173 1 0.369145572185516 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control OTUD3 ENSG00000169914 CDS Human protein_coding chr1:20224116 chr1:20224099 nonsynonymous SNV 0.992 1 4 hm5C_associated_SNPs_43171 0 0 1 0 2 OTUD3 chr1:20224033 3'AG 20224033 Downstream 67bp
chr1 20224099 20224099 1 + G A UCEC 20224116 + 20224096 20224136 41 TACGACAGTGTTCGGAGGATCAATGACAACTCAGAGGCACC TACAACAGTGTTCGGAGGATCAATGACAACTCAGAGGCACC < 41bp 1 0.247998536123173 1 0.369145572185516 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control OTUD3 ENSG00000169914 CDS Human protein_coding chr1:20224116 chr1:20224099 nonsynonymous SNV 0.992 1 4 hm5C_associated_SNPs_43171 0 0 1 0 2 OTUD3 chr1:20224155 5'GT 20224155 Upstream 57bp
chr2 232577534 232577534 1 + G T UCEC 232577531 + 232577511 232577551 41 TAGGATGACGATGTCGATACCAAGAAGCAGAAGACCGACGA TAGGATGACGATGTCGATACCAATAAGCAGAAGACCGACGA < 41bp 1 0.53210318325851 1 0.179170936346054 experiment 0.935793633482979 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232577531 chr2:232577534 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_43172 0 0 1 0 1 PTMA chr2:232577514 3'AG 232577514 Downstream 21bp
chr5 34949742 34949742 1 + G A UCEC 34949743 + 34949723 34949763 41 GAGAGAAGAGATGGAGAGAGCGAGCACAAATGTGCCAAAAT GAGAGAAGAGATGGAGAGAACGAGCACAAATGTGCCAAAAT < 41bp 1 0.502801975104081 1 0.824424207210541 experiment 0.994396049791839 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34949743 chr5:34949742 nonsynonymous SNV 0.000 0 20 hm5C_associated_SNPs_43173 0 0 0 0 2 DNAJC21 chr5:34949648 3'AG 34949648 Downstream 95bp
chr5 34949742 34949742 1 + G A UCEC 34949743 + 34949723 34949763 41 GAGAGAAGAGATGGAGAGAGCGAGCACAAATGTGCCAAAAT GAGAGAAGAGATGGAGAGAACGAGCACAAATGTGCCAAAAT < 41bp 1 0.502801975104081 1 0.824424207210541 experiment 0.994396049791839 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34949743 chr5:34949742 nonsynonymous SNV 0.000 0 20 hm5C_associated_SNPs_43173 0 0 0 0 2 DNAJC21 chr5:34949782 5'GT 34949782 Upstream 41bp
chr15 91492578 91492578 1 + G T UCEC 91492589 + 91492569 91492609 41 TCGGGTGAAGAAGCTGCTGGCAGCGGGTGTGGTGTCGGCCA TCGGGTGAATAAGCTGCTGGCAGCGGGTGTGGTGTCGGCCA < 41bp 1 0.760936514556977 1 0.726634323596954 experiment 0.478126970886045 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UNC45A ENSG00000140553 CDS Human protein_coding chr15:91492589 chr15:91492578 nonsynonymous SNV 1.000 0 10 hm5C_associated_SNPs_43180 0 0 1 0 2 UNC45A chr15:91492546 3'AG 91492546 Downstream 33bp
chr15 91492578 91492578 1 + G T UCEC 91492589 + 91492569 91492609 41 TCGGGTGAAGAAGCTGCTGGCAGCGGGTGTGGTGTCGGCCA TCGGGTGAATAAGCTGCTGGCAGCGGGTGTGGTGTCGGCCA < 41bp 1 0.760936514556977 1 0.726634323596954 experiment 0.478126970886045 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UNC45A ENSG00000140553 CDS Human protein_coding chr15:91492589 chr15:91492578 nonsynonymous SNV 1.000 0 10 hm5C_associated_SNPs_43180 0 0 1 0 2 UNC45A chr15:91492673 5'GT 91492673 Upstream 96bp
chr1 12009963 12009963 1 + G T UCEC 12009955 + 12009935 12009975 41 GAGGATCTGGTCATTCTCTTCGCAGACAGGTAGGTGGGTCA GAGGATCTGGTCATTCTCTTCGCAGACATGTAGGTGGGTCA < 41bp 1 0.513179909748125 1 0.829998016357422 experiment 0.97364018050375 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12009955 chr1:12009963 nonsynonymous SNV 0.980 3 29 hm5C_associated_SNPs_43181 0 0 1 0 1 PLOD1 chr1:12009963 5'GT 12009963 Upstream 1bp
chr11 45924000 45924000 1 + G T UCEC 45923984 + 45923964 45924004 41 GAGCTGCCCCCCCAGAGCGGCCCCGCCCCCACCACAGATCG GAGCTGCCCCCCCAGAGCGGCCCCGCCCCCACCACATATCG < 41bp 1 0.0635950392533403 1 0.0760771930217743 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923984 chr11:45924000 nonsynonymous SNV 0.817 3 37 hm5C_associated_SNPs_43183 0 0 1 0 1 MAPK8IP1 chr11:45923923 3'AG 45923923 Downstream 78bp
chr11 45924000 45924000 1 + G T UCEC 45923985 + 45923965 45924005 41 AGCTGCCCCCCCAGAGCGGCCCCGCCCCCACCACAGATCGA AGCTGCCCCCCCAGAGCGGCCCCGCCCCCACCACATATCGA < 41bp 1 0.0620719126179912 1 0.0857259631156921 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923985 chr11:45924000 nonsynonymous SNV 0.817 3 36 hm5C_associated_SNPs_43184 0 0 1 0 1 MAPK8IP1 chr11:45923923 3'AG 45923923 Downstream 78bp
chr11 45924000 45924000 1 + G T UCEC 45923986 + 45923966 45924006 41 GCTGCCCCCCCAGAGCGGCCCCGCCCCCACCACAGATCGAG GCTGCCCCCCCAGAGCGGCCCCGCCCCCACCACATATCGAG < 41bp 1 0.055655346214421 1 0.0861335098743439 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923986 chr11:45924000 nonsynonymous SNV 0.817 3 35 hm5C_associated_SNPs_43185 0 0 1 0 1 MAPK8IP1 chr11:45923923 3'AG 45923923 Downstream 78bp
chr11 45924000 45924000 1 + G T UCEC 45923987 + 45923967 45924007 41 CTGCCCCCCCAGAGCGGCCCCGCCCCCACCACAGATCGAGG CTGCCCCCCCAGAGCGGCCCCGCCCCCACCACATATCGAGG < 41bp 1 0.118240530514913 1 0.262667953968048 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923987 chr11:45924000 nonsynonymous SNV 0.817 3 34 hm5C_associated_SNPs_43186 0 0 1 0 1 MAPK8IP1 chr11:45923923 3'AG 45923923 Downstream 78bp
chr11 45924000 45924000 1 + G T UCEC 45923989 + 45923969 45924009 41 GCCCCCCCAGAGCGGCCCCGCCCCCACCACAGATCGAGGCA GCCCCCCCAGAGCGGCCCCGCCCCCACCACATATCGAGGCA < 41bp 1 0.0716952567764008 1 0.227397888898849 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923989 chr11:45924000 nonsynonymous SNV 0.817 3 32 hm5C_associated_SNPs_43187 0 0 1 0 1 MAPK8IP1 chr11:45923923 3'AG 45923923 Downstream 78bp
chr11 45924000 45924000 1 + G T UCEC 45923990 + 45923970 45924010 41 CCCCCCCAGAGCGGCCCCGCCCCCACCACAGATCGAGGCAC CCCCCCCAGAGCGGCCCCGCCCCCACCACATATCGAGGCAC < 41bp 1 0.279477010378277 1 0.632889688014984 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923990 chr11:45924000 nonsynonymous SNV 0.817 3 31 hm5C_associated_SNPs_43188 0 0 1 0 1 MAPK8IP1 chr11:45923923 3'AG 45923923 Downstream 78bp
chr11 45924000 45924000 1 + G T UCEC 45923991 + 45923971 45924011 41 CCCCCCAGAGCGGCCCCGCCCCCACCACAGATCGAGGCACC CCCCCCAGAGCGGCCCCGCCCCCACCACATATCGAGGCACC < 41bp 1 0.0669437884468998 1 0.0982395708560944 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923991 chr11:45924000 nonsynonymous SNV 0.817 3 30 hm5C_associated_SNPs_43189 0 0 1 0 1 MAPK8IP1 chr11:45923923 3'AG 45923923 Downstream 78bp
chr11 45924000 45924000 1 + G T UCEC 45923992 + 45923972 45924012 41 CCCCCAGAGCGGCCCCGCCCCCACCACAGATCGAGGCACCT CCCCCAGAGCGGCCCCGCCCCCACCACATATCGAGGCACCT < 41bp 1 0.041603739793537 1 0.149656772613525 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923992 chr11:45924000 nonsynonymous SNV 0.817 3 29 hm5C_associated_SNPs_43190 0 0 1 0 1 MAPK8IP1 chr11:45923923 3'AG 45923923 Downstream 78bp
chr11 45924000 45924000 1 + G T UCEC 45923993 + 45923973 45924013 41 CCCCAGAGCGGCCCCGCCCCCACCACAGATCGAGGCACCTC CCCCAGAGCGGCCCCGCCCCCACCACATATCGAGGCACCTC < 41bp 1 0.723700842308973 1 0.297372996807098 experiment 0.552598315382053 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923993 chr11:45924000 nonsynonymous SNV 0.817 3 28 hm5C_associated_SNPs_43191 0 0 1 0 1 MAPK8IP1 chr11:45923923 3'AG 45923923 Downstream 78bp
chr5 43649356 43649356 1 + G T UCEC 43649344 + 43649324 43649364 41 TGGCTGGCATTGTGGGGTATCATACCGTCTGGGGAGTGACC TGGCTGGCATTGTGGGGTATCATACCGTCTGGTGAGTGACC < 41bp 1 0.0932521013708609 1 0.0896016955375671 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43649344 chr5:43649356 stopgain 0.995 1 33 hm5C_associated_SNPs_43192 0 0 1 0 1 NNT chr5:43649410 5'GT 43649410 Upstream 55bp
chr5 43649356 43649356 1 + G T UCEC 43649348 + 43649328 43649368 41 TGGCATTGTGGGGTATCATACCGTCTGGGGAGTGACCCCTG TGGCATTGTGGGGTATCATACCGTCTGGTGAGTGACCCCTG < 41bp 1 0.247263719360223 1 0.465058088302612 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43649348 chr5:43649356 stopgain 0.995 1 29 hm5C_associated_SNPs_43193 0 0 1 0 1 NNT chr5:43649410 5'GT 43649410 Upstream 55bp
chr5 231085 231085 1 + G T UCEC 231073 + 231053 231093 41 CCATGATCACCAGGGCAGGCCTTCCTTGCCAGGACCTAGAG CCATGATCACCAGGGCAGGCCTTCCTTGCCAGTACCTAGAG < 41bp 1 0.236902818720444 1 0.181193768978119 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SDHA ENSG00000073578 CDS Human protein_coding chr5:231073 chr5:231085 nonsynonymous SNV 0.864 3 33 hm5C_associated_SNPs_43195 0 0 1 0 2 SDHA chr5:230991 3'AG 230991 Downstream 95bp
chr5 231085 231085 1 + G T UCEC 231073 + 231053 231093 41 CCATGATCACCAGGGCAGGCCTTCCTTGCCAGGACCTAGAG CCATGATCACCAGGGCAGGCCTTCCTTGCCAGTACCTAGAG < 41bp 1 0.236902818720444 1 0.181193768978119 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SDHA ENSG00000073578 CDS Human protein_coding chr5:231073 chr5:231085 nonsynonymous SNV 0.864 3 33 hm5C_associated_SNPs_43195 0 0 1 0 2 SDHA chr5:231115 5'GT 231115 Upstream 31bp
chr8 22054840 22054840 1 + G A UCEC 22054839 + 22054819 22054859 41 TTCTGTGGTTCTGAGAAGCCCGAGGTCATCACCTCCCAGTA TTCTGTGGTTCTGAGAAGCCCAAGGTCATCACCTCCCAGTA < 41bp 1 0.689630504202621 1 0.792672634124756 experiment 0.620738991594758 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22054839 chr8:22054840 nonsynonymous SNV 0.984 2 22 hm5C_associated_SNPs_43196 0 0 1 0 2 BMP1 chr8:22054753 3'AG 22054753 Downstream 88bp
chr8 22054840 22054840 1 + G A UCEC 22054839 + 22054819 22054859 41 TTCTGTGGTTCTGAGAAGCCCGAGGTCATCACCTCCCAGTA TTCTGTGGTTCTGAGAAGCCCAAGGTCATCACCTCCCAGTA < 41bp 1 0.689630504202621 1 0.792672634124756 experiment 0.620738991594758 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22054839 chr8:22054840 nonsynonymous SNV 0.984 2 22 hm5C_associated_SNPs_43196 0 0 1 0 2 BMP1 chr8:22054933 5'GT 22054933 Upstream 94bp
chr8 22054840 22054840 1 + G A UCEC 22054853 + 22054833 22054873 41 GAAGCCCGAGGTCATCACCTCCCAGTACAACAACATGCGCG GAAGCCCAAGGTCATCACCTCCCAGTACAACAACATGCGCG < 41bp 1 0.126339833362491 1 0.190434902906418 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22054853 chr8:22054840 nonsynonymous SNV 0.984 2 8 hm5C_associated_SNPs_43197 0 0 1 0 2 BMP1 chr8:22054753 3'AG 22054753 Downstream 88bp
chr8 22054840 22054840 1 + G A UCEC 22054853 + 22054833 22054873 41 GAAGCCCGAGGTCATCACCTCCCAGTACAACAACATGCGCG GAAGCCCAAGGTCATCACCTCCCAGTACAACAACATGCGCG < 41bp 1 0.126339833362491 1 0.190434902906418 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22054853 chr8:22054840 nonsynonymous SNV 0.984 2 8 hm5C_associated_SNPs_43197 0 0 1 0 2 BMP1 chr8:22054933 5'GT 22054933 Upstream 94bp
chr2 86947841 86947841 1 + G T UCEC 86947846 + 86947826 86947866 41 GAAGGTGCTGCACAAGTTCTCAGGCTACGGGCAGCTGTGCG GAAGGTGCTGCACAATTTCTCAGGCTACGGGCAGCTGTGCG < 41bp 1 0.740005450625714 1 0.97242796421051 experiment 0.519989098748572 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control RMND5A ENSG00000153561 CDS Human protein_coding chr2:86947846 chr2:86947841 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_43198 0 0 1 0 1 RMND5A chr2:86947932 5'GT 86947932 Upstream 92bp
chr17 42426655 42426655 1 + C T UCEC 42426663 + 42426643 42426683 41 CAGCTACAGCTGCTGCCGTCCCCTTCTGGTGAGTGCCCCTC CAGCTACAGCTGTTGCCGTCCCCTTCTGGTGAGTGCCCCTC < 41bp 1 0.0972477081564693 1 0.0524072647094727 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRN ENSG00000030582 CDS Human protein_coding chr17:42426663 chr17:42426655 synonymous SNV . 0 13 hm5C_associated_SNPs_43199 0 0 1 0 1 GRN chr17:42426670 5'GT 42426670 Upstream 16bp
chr17 42426655 42426655 1 + C T UCEC 42426664 + 42426644 42426684 41 AGCTACAGCTGCTGCCGTCCCCTTCTGGTGAGTGCCCCTCA AGCTACAGCTGTTGCCGTCCCCTTCTGGTGAGTGCCCCTCA < 41bp 1 0.0637974004451894 1 0.243425726890564 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRN ENSG00000030582 CDS Human protein_coding chr17:42426664 chr17:42426655 synonymous SNV . 0 12 hm5C_associated_SNPs_43200 0 0 1 0 1 GRN chr17:42426670 5'GT 42426670 Upstream 16bp
chr11 76829255 76829255 1 + G A UCEC 76829251 + 76829231 76829271 41 TTCACGGACATCATCAAGTGCCGCGTGATCAACACATCCCA TTCACGGACATCATCAAGTGCCGCATGATCAACACATCCCA < 41bp 1 0.304920052275485 1 0.0710746347904205 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76829251 chr11:76829255 nonsynonymous SNV 0.954 1 25 hm5C_associated_SNPs_43201 0 0 0 0 1 CAPN5 chr11:76829203 3'AG 76829203 Downstream 53bp
chr2 128861522 128861522 1 + G T UCEC 128861524 + 128861504 128861544 41 AGTGAGTTTTTAGCAGAAGACAGTCAAGAGAAATTTTGGAA AGTGAGTTTTTAGCAGAATACAGTCAAGAGAAATTTTGGAA < 41bp 1 0.0788602613324061 1 0.175419926643372 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128861524 chr2:128861522 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_43202 0 0 1 0 2 UGGT1 chr2:128861506 3'AG 128861506 Downstream 17bp
chr2 128861522 128861522 1 + G T UCEC 128861524 + 128861504 128861544 41 AGTGAGTTTTTAGCAGAAGACAGTCAAGAGAAATTTTGGAA AGTGAGTTTTTAGCAGAATACAGTCAAGAGAAATTTTGGAA < 41bp 1 0.0788602613324061 1 0.175419926643372 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128861524 chr2:128861522 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_43202 0 0 1 0 2 UGGT1 chr2:128861588 5'GT 128861588 Upstream 67bp
chr5 125820108 125820108 1 + G T UCEC 125820118 + 125820098 125820138 41 CCATGCGACAGAATCCCAAACAGTTCTGAATGTCTCCAAGG CCATGCGACATAATCCCAAACAGTTCTGAATGTCTCCAAGG < 41bp 1 0.268633573356638 1 0.176048666238785 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRAMD2B ENSG00000155324 CDS Human protein_coding chr5:125820118 chr5:125820108 stopgain 0.963 1 11 hm5C_associated_SNPs_43205 0 0 0 0 2 GRAMD2B chr5:125820091 3'AG 125820091 Downstream 18bp
chr5 125820108 125820108 1 + G T UCEC 125820118 + 125820098 125820138 41 CCATGCGACAGAATCCCAAACAGTTCTGAATGTCTCCAAGG CCATGCGACATAATCCCAAACAGTTCTGAATGTCTCCAAGG < 41bp 1 0.268633573356638 1 0.176048666238785 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRAMD2B ENSG00000155324 CDS Human protein_coding chr5:125820118 chr5:125820108 stopgain 0.963 1 11 hm5C_associated_SNPs_43205 0 0 0 0 2 GRAMD2B chr5:125820094 3'AG 125820094 Downstream 15bp
chr22 39440147 39440147 1 + C T UCEC 39440154 + 39440134 39440174 41 CCTTTGGCCAGTGCGCCCCACCACATGGGACAGCGCAGGTC CCTTTGGCCAGTGTGCCCCACCACATGGGACAGCGCAGGTC < 41bp 1 0.373998496087221 1 0.226268947124481 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APOBEC3F ENSG00000128394 CDS Human protein_coding chr22:39440154 chr22:39440147 synonymous SNV . 0 14 hm5C_associated_SNPs_43206 0 0 0 0 1 APOBEC3F chr22:39440088 3'AG 39440088 Downstream 60bp
chr12 6637436 6637436 1 + G A UCEC 6637450 + 6637430 6637470 41 ACTGGGGATCTGGCCATCCGCTTTCCCAATCTGGTGGACCC ACTGGGAATCTGGCCATCCGCTTTCCCAATCTGGTGGACCC < 41bp 1 0.0991492820367898 1 0.0578273236751556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6637450 chr12:6637436 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_43207 0 0 1 0 1 NCAPD2 chr12:6637339 3'AG 6637339 Downstream 98bp
chr16 56362599 56362599 1 + C A UCEC 56362604 + 56362584 56362624 41 AGACACCGAGCCCTTCTCTGCAGAGCTGCTTTCTGCCATGA AGACACCGAGCCCTTATCTGCAGAGCTGCTTTCTGCCATGA < 41bp 1 0.499746880884792 1 0.730260848999023 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control GNAO1 ENSG00000087258 CDS Human protein_coding chr16:56362604 chr16:56362599 nonsynonymous SNV 0.998 2 16 hm5C_associated_SNPs_43208 0 0 1 0 1 GNAO1 chr16:56362543 3'AG 56362543 Downstream 57bp
chr5 162905778 162905778 1 + C A UCEC 162905772 + 162905752 162905792 41 AAAAGTATGACAGTATGGTGCAAAGCCTTGAAGATGTTACT AAAAGTATGACAGTATGGTGCAAAGCATTGAAGATGTTACT < 41bp 1 0.348666148390411 1 0.239560157060623 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HMMR ENSG00000072571 CDS Human protein_coding chr5:162905772 chr5:162905778 nonsynonymous SNV 0.004 2 27 hm5C_associated_SNPs_43209 0 0 1 0 2 HMMR chr5:162905690 3'AG 162905690 Downstream 89bp
chr5 162905778 162905778 1 + C A UCEC 162905772 + 162905752 162905792 41 AAAAGTATGACAGTATGGTGCAAAGCCTTGAAGATGTTACT AAAAGTATGACAGTATGGTGCAAAGCATTGAAGATGTTACT < 41bp 1 0.348666148390411 1 0.239560157060623 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HMMR ENSG00000072571 CDS Human protein_coding chr5:162905772 chr5:162905778 nonsynonymous SNV 0.004 2 27 hm5C_associated_SNPs_43209 0 0 1 0 2 HMMR chr5:162905806 5'GT 162905806 Upstream 29bp
chr12 51449973 51449973 1 + G T UCEC 51449969 + 51449949 51449989 41 CAATACATGATATCTTGGCTCTGAGAGAGTGTTTCTCTAAC CAATACATGATATCTTGGCTCTGATAGAGTGTTTCTCTAAC < 41bp 1 0.394407649489981 1 0.0911135971546173 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51449969 chr12:51449973 nonsynonymous SNV 0.290 2 25 hm5C_associated_SNPs_43210 0 0 1 0 2 LETMD1 chr12:51449927 3'AG 51449927 Downstream 47bp
chr12 51449973 51449973 1 + G T UCEC 51449969 + 51449949 51449989 41 CAATACATGATATCTTGGCTCTGAGAGAGTGTTTCTCTAAC CAATACATGATATCTTGGCTCTGATAGAGTGTTTCTCTAAC < 41bp 1 0.394407649489981 1 0.0911135971546173 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51449969 chr12:51449973 nonsynonymous SNV 0.290 2 25 hm5C_associated_SNPs_43210 0 0 1 0 2 LETMD1 chr12:51450028 5'GT 51450028 Upstream 56bp
chr22 42032192 42032192 1 + G A UCEC 42032200 + 42032180 42032220 41 TTCTATGGTACCGAGAAAGACAAAAATTCAGTGAATTTTAA TTCTATGGTACCAAGAAAGACAAAAATTCAGTGAATTTTAA < 41bp 1 0.444387374916222 1 0.368028342723846 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42032200 chr22:42032192 nonsynonymous SNV 0.675 0 13 hm5C_associated_SNPs_43211 0 0 1 0 1 XRCC6 chr22:42032255 5'GT 42032255 Upstream 64bp
chr7 74103466 74103466 1 + G A UCEC 74103486 + 74103466 74103506 41 GCCCAAGTTGCAATGTCCACCCTCCCCGTTGAAGATGAGGA ACCCAAGTTGCAATGTCCACCCTCCCCGTTGAAGATGAGGA < 41bp 1 0.0277625092314064 1 0.113113313913345 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GTF2I ENSG00000077809 CDS Human processed_transcript chr7:74103486 chr7:74103466 nonsynonymous SNV 0.999 4 1 hm5C_associated_SNPs_43214 0 0 1 0 2 LOC101926943 chr7:74103458 3'AG 74103458 Downstream 9bp
chr7 74103466 74103466 1 + G A UCEC 74103486 + 74103466 74103506 41 GCCCAAGTTGCAATGTCCACCCTCCCCGTTGAAGATGAGGA ACCCAAGTTGCAATGTCCACCCTCCCCGTTGAAGATGAGGA < 41bp 1 0.0277625092314064 1 0.113113313913345 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GTF2I ENSG00000077809 CDS Human other chr7:74103486 chr7:74103466 nonsynonymous SNV 0.999 4 1 hm5C_associated_SNPs_43214 0 0 1 0 2 GTF2I chr7:74103561 5'GT 74103561 Upstream 96bp
chr14 73407009 73407009 1 + C T UCEC 73406995 + 73406975 73407015 41 TTGCTCCCTGGACATAACAACTGCAACCCCCTGACGAAAGA TTGCTCCCTGGACATAACAACTGCAACCCCCTGATGAAAGA < 41bp 1 0.691673929516314 1 0.39204216003418 experiment 0.616652140967372 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73406995 chr14:73407009 nonsynonymous SNV 0.761 4 35 hm5C_associated_SNPs_43215 0 0 1 0 3 DCAF4 chr14:73406928 3'AG 73406928 Downstream 82bp
chr14 73407009 73407009 1 + C T UCEC 73406995 + 73406975 73407015 41 TTGCTCCCTGGACATAACAACTGCAACCCCCTGACGAAAGA TTGCTCCCTGGACATAACAACTGCAACCCCCTGATGAAAGA < 41bp 1 0.691673929516314 1 0.39204216003418 experiment 0.616652140967372 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73406995 chr14:73407009 nonsynonymous SNV 0.761 4 35 hm5C_associated_SNPs_43215 0 0 1 0 3 DCAF4 chr14:73406960 3'AG 73406960 Downstream 50bp
chr14 73407009 73407009 1 + C T UCEC 73406995 + 73406975 73407015 41 TTGCTCCCTGGACATAACAACTGCAACCCCCTGACGAAAGA TTGCTCCCTGGACATAACAACTGCAACCCCCTGATGAAAGA < 41bp 1 0.691673929516314 1 0.39204216003418 experiment 0.616652140967372 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73406995 chr14:73407009 nonsynonymous SNV 0.761 4 35 hm5C_associated_SNPs_43215 0 0 1 0 3 DCAF4 chr14:73407085 5'GT 73407085 Upstream 77bp
chr12 132326250 132326250 1 + A G UCEC 132326257 + 132326237 132326277 41 GTGGCCGCTGCACACTCCATCATGCGGCCGTACTACCAGGG GTGGCCGCTGCACGCTCCATCATGCGGCCGTACTACCAGGG < 41bp 1 0.314107616788804 1 0.798640131950378 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132326257 chr12:132326250 nonsynonymous SNV 0.081 0 14 hm5C_associated_SNPs_43216 0 0 0 0 2 MMP17 chr12:132326169 3'AG 132326169 Downstream 82bp
chr12 132326250 132326250 1 + A G UCEC 132326257 + 132326237 132326277 41 GTGGCCGCTGCACACTCCATCATGCGGCCGTACTACCAGGG GTGGCCGCTGCACGCTCCATCATGCGGCCGTACTACCAGGG < 41bp 1 0.314107616788804 1 0.798640131950378 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132326257 chr12:132326250 nonsynonymous SNV 0.081 0 14 hm5C_associated_SNPs_43216 0 0 0 0 2 MMP17 chr12:132326345 5'GT 132326345 Upstream 96bp
chrX 69639595 69639595 1 + A G UCEC 69639607 + 69639587 69639627 41 CAGGATTGAGCTTCTTTAATCCCGTCTGTGCCACCCCCAAT CAGGATTGGGCTTCTTTAATCCCGTCTGTGCCACCCCCAAT < 41bp 1 0.479989600795829 1 0.200018614530563 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639607 chrX:69639595 nonsynonymous SNV 0.990 2 9 hm5C_associated_SNPs_43217 0 0 0 0 2 KIF4A chrX:69639511 3'AG 69639511 Downstream 85bp
chrX 69639595 69639595 1 + A G UCEC 69639607 + 69639587 69639627 41 CAGGATTGAGCTTCTTTAATCCCGTCTGTGCCACCCCCAAT CAGGATTGGGCTTCTTTAATCCCGTCTGTGCCACCCCCAAT < 41bp 1 0.479989600795829 1 0.200018614530563 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639607 chrX:69639595 nonsynonymous SNV 0.990 2 9 hm5C_associated_SNPs_43217 0 0 0 0 2 KIF4A chrX:69639633 5'GT 69639633 Upstream 39bp
chr19 42373816 42373816 1 + C G UCEC 42373808 + 42373788 42373828 41 CAGGGACAAAGAGATCTGGACAGAATCGCCGGACAGGTAAG CAGGGACAAAGAGATCTGGACAGAATCGGCGGACAGGTAAG < 41bp 1 0.626334527380212 1 0.33413553237915 experiment 0.747330945239577 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373808 chr19:42373816 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_43219 0 0 1 0 2 RPS19 chr19:42373769 3'AG 42373769 Downstream 48bp
chr19 42373816 42373816 1 + C G UCEC 42373808 + 42373788 42373828 41 CAGGGACAAAGAGATCTGGACAGAATCGCCGGACAGGTAAG CAGGGACAAAGAGATCTGGACAGAATCGGCGGACAGGTAAG < 41bp 1 0.626334527380212 1 0.33413553237915 experiment 0.747330945239577 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373808 chr19:42373816 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_43219 0 0 1 0 2 RPS19 chr19:42373823 5'GT 42373823 Upstream 8bp
chr17 41154751 41154751 1 + G T UCEC 41154768 + 41154748 41154788 41 CCTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAA CCTTCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAA < 41bp 1 0.251997754711993 1 0.35940757393837 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL27 ENSG00000131469 CDS Human protein_coding chr17:41154768 chr17:41154751 nonsynonymous SNV 0.999 1 4 hm5C_associated_SNPs_43220 0 0 1 0 2 RPL27 chr17:41154690 3'AG 41154690 Downstream 62bp
chr17 41154751 41154751 1 + G T UCEC 41154768 + 41154748 41154788 41 CCTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAA CCTTCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAA < 41bp 1 0.251997754711993 1 0.35940757393837 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL27 ENSG00000131469 CDS Human protein_coding chr17:41154768 chr17:41154751 nonsynonymous SNV 0.999 1 4 hm5C_associated_SNPs_43220 0 0 1 0 2 RPL27 chr17:41154800 5'GT 41154800 Upstream 50bp
chr11 46388885 46388885 1 + C T UCEC 46388894 + 46388874 46388914 41 GGCCCCCCCTCCGCCCACCCCTGGGGCCCCGTGCAGCGAGT GGCCCCCCCTCTGCCCACCCCTGGGGCCCCGTGCAGCGAGT < 41bp 1 0.770429658143035 1 0.758750438690186 experiment 0.45914068371393 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DGKZ ENSG00000149091 CDS Human protein_coding chr11:46388894 chr11:46388885 nonsynonymous SNV 0.252 2 12 hm5C_associated_SNPs_43221 0 0 1 0 1 DGKZ chr11:46388841 3'AG 46388841 Downstream 45bp
chr9 112705582 112705582 1 + C T UCEC 112705590 + 112705570 112705610 41 TGAGCTTGTGTCCGGGAGGCCGGTCTCAGACACCACAGAGC TGAGCTTGTGTCTGGGAGGCCGGTCTCAGACACCACAGAGC < 41bp 1 0.0981264083000103 1 0.429842174053192 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PALM2 ENSG00000157654;ENSG00000243444 CDS Human other chr9:112705590 chr9:112705582 synonymous SNV . 0 13 hm5C_associated_SNPs_43222 0 0 0 0 1 PALM2 chr9:112705661 5'GT 112705661 Upstream 80bp
chr19 18255963 18255963 1 + A G UCEC 18255949 + 18255929 18255969 41 CGGCCCCCCATCGTTATCCACAGCTCTGGCAAGAAGTACGG CGGCCCCCCATCGTTATCCACAGCTCTGGCAAGAGGTACGG < 41bp 1 0.285561300860581 1 0.0597706437110901 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18255949 chr19:18255963 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_43223 0 0 0 0 1 MAST3 chr19:18256039 5'GT 18256039 Upstream 77bp
chr11 46394434 46394434 1 + G A UCEC 46394414 + 46394394 46394434 41 GTACTGGCAACGACTTGGCCCGAACCCTCAACTGGGGTGGG GTACTGGCAACGACTTGGCCCGAACCCTCAACTGGGGTGGA < 41bp 1 0.11194305252363 1 0.0396721363067627 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46394414 chr11:46394434 synonymous SNV . 0 41 hm5C_associated_SNPs_43224 0 0 1 0 1 DGKZ chr11:46394434 5'GT 46394434 Upstream 1bp
chr11 46394434 46394434 1 + G A UCEC 46394418 + 46394398 46394438 41 TGGCAACGACTTGGCCCGAACCCTCAACTGGGGTGGGGTAA TGGCAACGACTTGGCCCGAACCCTCAACTGGGGTGGAGTAA < 41bp 1 0.0681544129005573 1 0.319894909858704 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46394418 chr11:46394434 synonymous SNV . 0 37 hm5C_associated_SNPs_43225 0 0 1 0 1 DGKZ chr11:46394434 5'GT 46394434 Upstream 1bp
chr7 72397373 72397373 1 + A G UCEC 72397355 + 72397335 72397375 41 TGTAGACCAGAGCAGATAATCAGCTCAACACTGTCCTCACC TGTAGACCAGAGCAGATAATCAGCTCAACACTGTCCTCGCC < 41bp 1 0.414159250918824 1 0.871983051300049 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POM121 ENSG00000196313 CDS Human protein_coding chr7:72397355 chr7:72397373 synonymous SNV . 0 39 hm5C_associated_SNPs_43227 0 0 1 0 1 POM121 chr7:72397340 3'AG 72397340 Downstream 34bp
chr2 113277929 113277929 1 + G A UCEC 113277937 + 113277917 113277957 41 TTCCAGCTCTTCGGCTTTGACTTCATGGTCGATGAGGAGCT TTCCAGCTCTTCAGCTTTGACTTCATGGTCGATGAGGAGCT < 41bp 1 0.732181386914815 1 0.667361617088318 experiment 0.535637226170371 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113277937 chr2:113277929 nonsynonymous SNV 0.995 4 13 hm5C_associated_SNPs_43228 0 0 1 0 2 TTL chr2:113277859 3'AG 113277859 Downstream 71bp
chr2 113277929 113277929 1 + G A UCEC 113277937 + 113277917 113277957 41 TTCCAGCTCTTCGGCTTTGACTTCATGGTCGATGAGGAGCT TTCCAGCTCTTCAGCTTTGACTTCATGGTCGATGAGGAGCT < 41bp 1 0.732181386914815 1 0.667361617088318 experiment 0.535637226170371 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113277937 chr2:113277929 nonsynonymous SNV 0.995 4 13 hm5C_associated_SNPs_43228 0 0 1 0 2 TTL chr2:113278002 5'GT 113278002 Upstream 74bp
chrX 41088615 41088615 1 + A C UCEC 41088595 + 41088575 41088615 41 GAATCACTATCAAAAAAGAGCATACCAGTGTATAAAATGTA GAATCACTATCAAAAAAGAGCATACCAGTGTATAAAATGTC < 41bp 1 0.00632462332199859 1 0.103228688240051 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41088595 chrX:41088615 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_43229 0 0 1 0 1 USP9X chrX:41088662 5'GT 41088662 Upstream 48bp
chr19 55817714 55817714 1 + G A UCEC 55817715 + 55817695 55817735 41 GTCTTCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTC GTCTTCCAAAAGCCCGTCCACTTCCAGGTGGACATCAGCTC < 41bp 1 0.143171157933951 1 0.118593096733093 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55817715 chr19:55817714 nonsynonymous SNV 0.994 3 20 hm5C_associated_SNPs_43230 0 0 1 0 1 BRSK1 chr19:55817620 3'AG 55817620 Downstream 95bp
chr19 55817714 55817714 1 + G A UCEC 55817719 + 55817699 55817739 41 TCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTCCTCT TCCAAAAGCCCGTCCACTTCCAGGTGGACATCAGCTCCTCT < 41bp 1 0.730347366988553 1 0.957031071186066 experiment 0.539305266022895 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55817719 chr19:55817714 nonsynonymous SNV 0.994 3 16 hm5C_associated_SNPs_43231 0 0 1 0 1 BRSK1 chr19:55817620 3'AG 55817620 Downstream 95bp
chr1 26109103 26109103 1 + G A UCEC 26109121 + 26109101 26109141 41 AAGCCGGTTTCTCTGGGATCCAAGACGTGTACAGTAGCACC AAACCGGTTTCTCTGGGATCCAAGACGTGTACAGTAGCACC < 41bp 1 0.588974489469736 1 0.755324840545654 experiment 0.822051021060529 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26109121 chr1:26109103 nonsynonymous SNV 0.821 0 3 hm5C_associated_SNPs_43233 0 0 0 0 2 MAN1C1 chr1:26109076 3'AG 26109076 Downstream 28bp
chr1 26109103 26109103 1 + G A UCEC 26109121 + 26109101 26109141 41 AAGCCGGTTTCTCTGGGATCCAAGACGTGTACAGTAGCACC AAACCGGTTTCTCTGGGATCCAAGACGTGTACAGTAGCACC < 41bp 1 0.588974489469736 1 0.755324840545654 experiment 0.822051021060529 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26109121 chr1:26109103 nonsynonymous SNV 0.821 0 3 hm5C_associated_SNPs_43233 0 0 0 0 2 MAN1C1 chr1:26109191 5'GT 26109191 Upstream 89bp
chr19 17273842 17273842 1 + C T UCEC 17273851 + 17273831 17273871 41 TTTGAAGACTTCGAGAGGAACAGCTTTGAGCAGTTCTGCAT TTTGAAGACTTTGAGAGGAACAGCTTTGAGCAGTTCTGCAT < 41bp 1 0.287346950680078 1 0.120919525623322 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17273851 chr19:17273842 synonymous SNV . 0 12 hm5C_associated_SNPs_43234 0 0 1 0 2 MYO9B chr19:17273798 3'AG 17273798 Downstream 45bp
chr19 17273842 17273842 1 + C T UCEC 17273851 + 17273831 17273871 41 TTTGAAGACTTCGAGAGGAACAGCTTTGAGCAGTTCTGCAT TTTGAAGACTTTGAGAGGAACAGCTTTGAGCAGTTCTGCAT < 41bp 1 0.287346950680078 1 0.120919525623322 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17273851 chr19:17273842 synonymous SNV . 0 12 hm5C_associated_SNPs_43234 0 0 1 0 2 MYO9B chr19:17273932 5'GT 17273932 Upstream 91bp
chrX 24755780 24755780 1 + G T UCEC 24755775 + 24755755 24755795 41 ATGGGTTTGAACTGGAAGTACTACTGCAGAGAATTAATGTG ATGGGTTTGAACTGGAAGTACTACTTCAGAGAATTAATGTG < 41bp 1 0.146114023010246 1 0.110177397727966 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLA1 ENSG00000101868 CDS Human protein_coding chrX:24755775 chrX:24755780 synonymous SNV . 0 26 hm5C_associated_SNPs_43236 0 0 1 0 1 POLA1 chrX:24755858 5'GT 24755858 Upstream 79bp
chr15 74918195 74918195 1 + G A UCEC 74918204 + 74918184 74918224 41 ACATGTGCATCGCCTTTGAGCTCCTGGGCAAGAACACCTTT ACATGTGCATCACCTTTGAGCTCCTGGGCAAGAACACCTTT < 41bp 1 0.378589999800979 1 0.169330179691315 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLK3 ENSG00000179335 CDS Human protein_coding chr15:74918204 chr15:74918195 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_43237 0 0 1 0 1 CLK3 chr15:74918143 3'AG 74918143 Downstream 53bp
chr2 71368480 71368480 1 + A C UCEC 71368493 + 71368473 71368513 41 GAACAGGAGTACATCAAACTCAACCAGGTGAGGAAGCCTGT GAACAGGCGTACATCAAACTCAACCAGGTGAGGAAGCCTGT < 41bp 1 0.365308348845073 1 0.079357922077179 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MPHOSPH10 ENSG00000124383 CDS Human protein_coding chr2:71368493 chr2:71368480 nonsynonymous SNV 0.989 4 8 hm5C_associated_SNPs_43242 0 0 1 0 1 MPHOSPH10 chr2:71368499 5'GT 71368499 Upstream 20bp
chr15 101447434 101447434 1 + C A UCEC 101447426 + 101447406 101447446 41 ACTCACAGCAGCCGTGTTCACAAAAAATCTCGACAAAGCCC ACTCACAGCAGCCGTGTTCACAAAAAATATCGACAAAGCCC < 41bp 1 0.766222241126302 1 0.418192744255066 experiment 0.467555517747396 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101447426 chr15:101447434 nonsynonymous SNV 0.983 0 29 hm5C_associated_SNPs_43243 0 0 0 0 1 ALDH1A3 chr15:101447483 5'GT 101447483 Upstream 50bp
chr4 48835483 48835483 1 + A C UCEC 48835494 + 48835474 48835514 41 AATGATGAAAGCTTCTGGTTCAGATGTGAGTTCAATTTTCT AATGATGAACGCTTCTGGTTCAGATGTGAGTTCAATTTTCT < 41bp 1 0.339590232094135 1 0.472832143306732 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48835494 chr4:48835483 nonsynonymous SNV 0.984 3 10 hm5C_associated_SNPs_43244 0 0 1 0 2 OCIAD1 chr4:48835418 3'AG 48835418 Downstream 66bp
chr4 48835483 48835483 1 + A C UCEC 48835494 + 48835474 48835514 41 AATGATGAAAGCTTCTGGTTCAGATGTGAGTTCAATTTTCT AATGATGAACGCTTCTGGTTCAGATGTGAGTTCAATTTTCT < 41bp 1 0.339590232094135 1 0.472832143306732 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48835494 chr4:48835483 nonsynonymous SNV 0.984 3 10 hm5C_associated_SNPs_43244 0 0 1 0 2 OCIAD1 chr4:48835498 5'GT 48835498 Upstream 16bp
chr15 63111769 63111769 1 + C T UCEC 63111780 + 63111760 63111800 41 TTCTCCAAGCGAGTCGCCGGCGCTGTGACAGAGCTCATCCA TTCTCCAAGTGAGTCGCCGGCGCTGTGACAGAGCTCATCCA < 41bp 1 0.148089175656651 1 0.34698075056076 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63111780 chr15:63111769 stopgain 0.692 1 10 hm5C_associated_SNPs_43246 0 0 0 0 2 TLN2 chr15:63111715 3'AG 63111715 Downstream 55bp
chr15 63111769 63111769 1 + C T UCEC 63111780 + 63111760 63111800 41 TTCTCCAAGCGAGTCGCCGGCGCTGTGACAGAGCTCATCCA TTCTCCAAGTGAGTCGCCGGCGCTGTGACAGAGCTCATCCA < 41bp 1 0.148089175656651 1 0.34698075056076 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63111780 chr15:63111769 stopgain 0.692 1 10 hm5C_associated_SNPs_43246 0 0 0 0 2 TLN2 chr15:63111820 5'GT 63111820 Upstream 52bp
chr1 186946857 186946857 1 + G T UCEC 186946875 + 186946855 186946895 41 AAGATTGCCCAACCATCATCCACTTTGTTCTGGCCAACATC AATATTGCCCAACCATCATCCACTTTGTTCTGGCCAACATC < 41bp 1 0.194041300059054 1 0.374133229255676 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186946875 chr1:186946857 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_43247 0 0 1 0 1 PLA2G4A chr1:186946920 5'GT 186946920 Upstream 64bp
chr6 31929384 31929384 1 + G A UCEC 31929378 + 31929358 31929398 41 CAGAGCCTCCATCTCAGGAGCAGTGGGCCATCCCTGTGGAC CAGAGCCTCCATCTCAGGAGCAGTGGACCATCCCTGTGGAC < 41bp 1 0.270588734295636 1 0.409623652696609 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31929378 chr6:31929384 nonsynonymous SNV 0.928 3 27 hm5C_associated_SNPs_43248 0 0 1 0 2 SKIV2L chr6:31929324 3'AG 31929324 Downstream 61bp
chr6 31929384 31929384 1 + G A UCEC 31929378 + 31929358 31929398 41 CAGAGCCTCCATCTCAGGAGCAGTGGGCCATCCCTGTGGAC CAGAGCCTCCATCTCAGGAGCAGTGGACCATCCCTGTGGAC < 41bp 1 0.270588734295636 1 0.409623652696609 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31929378 chr6:31929384 nonsynonymous SNV 0.928 3 27 hm5C_associated_SNPs_43248 0 0 1 0 2 SKIV2L chr6:31929452 5'GT 31929452 Upstream 69bp
chr11 68213990 68213990 1 + G A UCEC 68213986 + 68213966 68214006 41 CTCTTCAAACATTCCGGCCACTGCGAGACCGTACAGGTAGG CTCTTCAAACATTCCGGCCACTGCAAGACCGTACAGGTAGG < 41bp 1 0.475166643476831 1 0.460545748472214 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68213986 chr11:68213990 synonymous SNV . 0 25 hm5C_associated_SNPs_43249 0 0 1 0 2 LRP5 chr11:68213904 3'AG 68213904 Downstream 87bp
chr11 68213990 68213990 1 + G A UCEC 68213986 + 68213966 68214006 41 CTCTTCAAACATTCCGGCCACTGCGAGACCGTACAGGTAGG CTCTTCAAACATTCCGGCCACTGCAAGACCGTACAGGTAGG < 41bp 1 0.475166643476831 1 0.460545748472214 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68213986 chr11:68213990 synonymous SNV . 0 25 hm5C_associated_SNPs_43249 0 0 1 0 2 LRP5 chr11:68214001 5'GT 68214001 Upstream 12bp
chrX 47774356 47774356 1 + G T UCEC 47774348 + 47774328 47774368 41 AAATTTGGAATTAAGCCTTCCCAGAGGAGAATTTCTGGGAA AAATTTGGAATTAAGCCTTCCCAGAGGATAATTTCTGGGAA < 41bp 1 0.219689739956459 1 0.597618460655212 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF81 ENSG00000197779 CDS Human protein_coding chrX:47774348 chrX:47774356 nonsynonymous SNV 0.703 0 29 hm5C_associated_SNPs_43250 0 0 0 0 1 ZNF81 chrX:47774323 3'AG 47774323 Downstream 34bp
chr6 160481681 160481681 1 + G A UCEC 160481661 + 160481641 160481681 41 AAATTCCTGCATCAAGATATCGACTCTGGGCAAGGGATCCG AAATTCCTGCATCAAGATATCGACTCTGGGCAAGGGATCCA < 41bp 1 0.162425975805561 1 0.305353164672852 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160481661 chr6:160481681 nonsynonymous SNV 0.952 0 41 hm5C_associated_SNPs_43251 0 0 1 0 1 IGF2R chr6:160481749 5'GT 160481749 Upstream 69bp
chr5 118529625 118529625 1 + G A UCEC 118529637 + 118529617 118529657 41 TAGCATCAGATTTCCATCTCCAGGAACATTCTAATTCAAAT TAGCATCAAATTTCCATCTCCAGGAACATTCTAATTCAAAT < 41bp 1 0.227615393526621 1 0.820639491081238 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DMXL1 ENSG00000172869 CDS Human protein_coding chr5:118529637 chr5:118529625 nonsynonymous SNV 0.989 0 9 hm5C_associated_SNPs_43252 0 0 1 0 1 DMXL1 chr5:118529665 5'GT 118529665 Upstream 41bp
chr1 156202162 156202162 1 + G A UCEC 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGCAATGACACAGCAAATCTATGACAAGTTTATA < 41bp 1 0.0943916493808916 1 0.161862403154373 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202162 synonymous SNV . 0 11 hm5C_associated_SNPs_43253 0 0 1 1 2 PMF1;PMF1-BGLAP chr1:156202111 3'AG 156202111 Downstream 52bp
chr1 156202162 156202162 1 + G A UCEC 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGCAATGACACAGCAAATCTATGACAAGTTTATA < 41bp 1 0.0943916493808916 1 0.161862403154373 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202162 synonymous SNV . 0 11 hm5C_associated_SNPs_43253 0 0 1 1 2 PMF1;PMF1-BGLAP chr1:156202216 5'GT 156202216 Upstream 55bp
chrX 110951614 110951614 1 + C T UCEC 110951619 + 110951599 110951639 41 TCTTTCGGGCCATTTCGGAGCAGGTAAAAGGAAAACATATC TCTTTCGGGCCATTTTGGAGCAGGTAAAAGGAAAACATATC < 41bp 1 0.523663303685945 1 0.824633598327637 experiment 0.95267339262811 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG13 ENSG00000101901 CDS Human protein_coding chrX:110951619 chrX:110951614 nonsynonymous SNV 0.979 2 16 hm5C_associated_SNPs_43255 0 0 1 0 1 ALG13 chrX:110951621 5'GT 110951621 Upstream 8bp
chr19 48259792 48259792 1 + G A UCEC 48259799 + 48259779 48259819 41 CTGTAGCCCGAGGGCAACATCCTTCGAGACCGGTTCAAGAG CTGTAGCCCGAGGACAACATCCTTCGAGACCGGTTCAAGAG < 41bp 1 0.0407402933362894 1 0.107763946056366 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259799 chr19:48259792 nonsynonymous SNV 0.965 4 14 hm5C_associated_SNPs_43258 0 0 1 0 2 NOP53 chr19:48259785 3'AG 48259785 Downstream 8bp
chr19 48259792 48259792 1 + G A UCEC 48259799 + 48259779 48259819 41 CTGTAGCCCGAGGGCAACATCCTTCGAGACCGGTTCAAGAG CTGTAGCCCGAGGACAACATCCTTCGAGACCGGTTCAAGAG < 41bp 1 0.0407402933362894 1 0.107763946056366 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259799 chr19:48259792 nonsynonymous SNV 0.965 4 14 hm5C_associated_SNPs_43258 0 0 1 0 2 NOP53 chr19:48259861 5'GT 48259861 Upstream 70bp
chr19 48259792 48259792 1 + G A UCEC 48259803 + 48259783 48259823 41 AGCCCGAGGGCAACATCCTTCGAGACCGGTTCAAGAGCTTC AGCCCGAGGACAACATCCTTCGAGACCGGTTCAAGAGCTTC < 41bp 1 0.690413364686265 1 0.894723773002625 experiment 0.61917327062747 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259803 chr19:48259792 nonsynonymous SNV 0.965 4 10 hm5C_associated_SNPs_43259 0 0 1 0 2 NOP53 chr19:48259785 3'AG 48259785 Downstream 8bp
chr19 48259792 48259792 1 + G A UCEC 48259803 + 48259783 48259823 41 AGCCCGAGGGCAACATCCTTCGAGACCGGTTCAAGAGCTTC AGCCCGAGGACAACATCCTTCGAGACCGGTTCAAGAGCTTC < 41bp 1 0.690413364686265 1 0.894723773002625 experiment 0.61917327062747 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259803 chr19:48259792 nonsynonymous SNV 0.965 4 10 hm5C_associated_SNPs_43259 0 0 1 0 2 NOP53 chr19:48259861 5'GT 48259861 Upstream 70bp
chr6 4937919 4937919 1 + C T UCEC 4937916 + 4937896 4937936 41 TTGACTTTATTTATTTTATACGACGTCTGACAGATGACAGG TTGACTTTATTTATTTTATACGATGTCTGACAGATGACAGG < 41bp 1 0.202440168185086 1 0.155318737030029 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDYL ENSG00000153046 CDS Human protein_coding chr6:4937916 chr6:4937919 nonsynonymous SNV 0.965 1 24 hm5C_associated_SNPs_43261 0 0 1 0 1 CDYL chr6:4937971 5'GT 4937971 Upstream 53bp
chr1 55452088 55452088 1 + A C UCEC 55452081 + 55452061 55452101 41 CACCTCTCCAGAGACCTGTACTACCTCACTGTGGAGTCCTC CACCTCTCCAGAGACCTGTACTACCTCCCTGTGGAGTCCTC < 41bp 1 0.119463685682962 1 0.061031699180603 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM61 ENSG00000143001 CDS Human protein_coding chr1:55452081 chr1:55452088 nonsynonymous SNV 0.675 3 28 hm5C_associated_SNPs_43263 0 0 0 0 1 TMEM61 chr1:55452119 5'GT 55452119 Upstream 32bp
chrX 149896165 149896165 1 + T G UCEC 149896183 + 149896163 149896203 41 ATTTTATCCTTGATGTTCCCCTTGGAGTGATCAGCAGAGTG ATGTTATCCTTGATGTTCCCCTTGGAGTGATCAGCAGAGTG < 41bp 1 0.269246012152963 1 0.0332295000553131 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149896183 chrX:149896165 nonsynonymous SNV 0.953 2 3 hm5C_associated_SNPs_43264 0 0 1 0 2 MTMR1 chrX:149896156 3'AG 149896156 Downstream 10bp
chrX 149896165 149896165 1 + T G UCEC 149896183 + 149896163 149896203 41 ATTTTATCCTTGATGTTCCCCTTGGAGTGATCAGCAGAGTG ATGTTATCCTTGATGTTCCCCTTGGAGTGATCAGCAGAGTG < 41bp 1 0.269246012152963 1 0.0332295000553131 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149896183 chrX:149896165 nonsynonymous SNV 0.953 2 3 hm5C_associated_SNPs_43264 0 0 1 0 2 MTMR1 chrX:149896263 5'GT 149896263 Upstream 99bp
chr12 101705858 101705858 1 + G T UCEC 101705877 + 101705857 101705897 41 AGATGAAAGTTGGGAGCAGACCCAGGAAGGAGATGTTGGAG ATATGAAAGTTGGGAGCAGACCCAGGAAGGAGATGTTGGAG < 41bp 1 0.372117665471451 1 0.470059394836426 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101705877 chr12:101705858 nonsynonymous SNV 0.615 1 2 hm5C_associated_SNPs_43265 0 0 1 0 1 UTP20 chr12:101705814 3'AG 101705814 Downstream 45bp
chr11 117152058 117152058 1 + C T UCEC 117152053 + 117152033 117152073 41 AACTCCCCCAACACTGGAGACAGTTCGTTCCAAACAGGAGT AACTCCCCCAACACTGGAGACAGTTTGTTCCAAACAGGAGT < 41bp 1 0.106330517568011 1 0.147689044475555 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152053 chr11:117152058 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_43266 0 0 1 0 2 RNF214 chr11:117152030 3'AG 117152030 Downstream 29bp
chr11 117152058 117152058 1 + C T UCEC 117152053 + 117152033 117152073 41 AACTCCCCCAACACTGGAGACAGTTCGTTCCAAACAGGAGT AACTCCCCCAACACTGGAGACAGTTTGTTCCAAACAGGAGT < 41bp 1 0.106330517568011 1 0.147689044475555 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152053 chr11:117152058 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_43266 0 0 1 0 2 RNF214 chr11:117152120 5'GT 117152120 Upstream 63bp
chr7 128445497 128445497 1 + C A UCEC 128445505 + 128445485 128445525 41 AGAAATGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGT AGAAATGGATTTATTAGAGCCTGATCCTGAAATGCAGTTGT < 41bp 1 0.173849745807327 1 0.191786736249924 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445505 chr7:128445497 nonsynonymous SNV 0.997 2 13 hm5C_associated_SNPs_43268 0 0 1 0 2 CCDC136 chr7:128445413 3'AG 128445413 Downstream 85bp
chr7 128445497 128445497 1 + C A UCEC 128445505 + 128445485 128445525 41 AGAAATGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGT AGAAATGGATTTATTAGAGCCTGATCCTGAAATGCAGTTGT < 41bp 1 0.173849745807327 1 0.191786736249924 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445505 chr7:128445497 nonsynonymous SNV 0.997 2 13 hm5C_associated_SNPs_43268 0 0 1 0 2 CCDC136 chr7:128445578 5'GT 128445578 Upstream 82bp
chr7 128445497 128445497 1 + C A UCEC 128445510 + 128445490 128445530 41 TGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGTTACGG TGGATTTATTAGAGCCTGATCCTGAAATGCAGTTGTTACGG < 41bp 1 0.367808869165758 1 0.372789978981018 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445510 chr7:128445497 nonsynonymous SNV 0.997 2 8 hm5C_associated_SNPs_43269 0 0 1 0 2 CCDC136 chr7:128445413 3'AG 128445413 Downstream 85bp
chr7 128445497 128445497 1 + C A UCEC 128445510 + 128445490 128445530 41 TGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGTTACGG TGGATTTATTAGAGCCTGATCCTGAAATGCAGTTGTTACGG < 41bp 1 0.367808869165758 1 0.372789978981018 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445510 chr7:128445497 nonsynonymous SNV 0.997 2 8 hm5C_associated_SNPs_43269 0 0 1 0 2 CCDC136 chr7:128445578 5'GT 128445578 Upstream 82bp
chr1 118477158 118477158 1 + A C UCEC 118477159 + 118477139 118477179 41 GCCCCTCCCCAGATGGGCTACACTTAGCTGTTGGGTATGAG GCCCCTCCCCAGATGGGCTCCACTTAGCTGTTGGGTATGAG < 41bp 1 0.15352055178063 1 0.0796947479248047 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient WDR3 ENSG00000065183 CDS Human protein_coding chr1:118477159 chr1:118477158 synonymous SNV . 0 20 hm5C_associated_SNPs_43270 0 0 1 0 1 WDR3 chr1:118477096 3'AG 118477096 Downstream 63bp
chr12 132516567 132516567 1 + A G UCEC 132516568 + 132516548 132516588 41 CTCCACTCACAGCCGTACCACAGGTATAAACCTTGTAGAGG CTCCACTCACAGCCGTACCGCAGGTATAAACCTTGTAGAGG < 41bp 1 0.20195211155832 1 0.255713403224945 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132516568 chr12:132516567 nonsynonymous SNV 0.069 0 20 hm5C_associated_SNPs_43271 0 0 1 0 1 EP400 chr12:132516498 3'AG 132516498 Downstream 70bp
chr7 66703394 66703394 1 + G A UCEC 66703395 + 66703375 66703415 41 TGGATCAAAAACGTTCAGCGCAAAGGATTATATGGCCAGAA TGGATCAAAAACGTTCAGCACAAAGGATTATATGGCCAGAA < 41bp 1 0.390442107742389 1 0.124445527791977 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66703395 chr7:66703394 nonsynonymous SNV 0.937 0 20 hm5C_associated_SNPs_43274 0 0 0 0 1 TYW1 chr7:66703295 3'AG 66703295 Downstream 100bp
chr16 29989126 29989126 1 + G T UCEC 29989108 + 29989088 29989128 41 GCCACCATGCCAGCTGGGGGCCGGGCCGGGAGCCTGAAGGA GCCACCATGCCAGCTGGGGGCCGGGCCGGGAGCCTGAATGA < 41bp 1 0.578324013290867 1 0.597264051437378 experiment 0.843351973418267 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29989108 chr16:29989126 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_43275 0 0 1 0 1 TAOK2 chr16:29989225 5'GT 29989225 Upstream 100bp
chr16 29989126 29989126 1 + G T UCEC 29989109 + 29989089 29989129 41 CCACCATGCCAGCTGGGGGCCGGGCCGGGAGCCTGAAGGAC CCACCATGCCAGCTGGGGGCCGGGCCGGGAGCCTGAATGAC < 41bp 1 0.450288415698673 1 0.610597908496857 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29989109 chr16:29989126 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_43276 0 0 1 0 1 TAOK2 chr16:29989225 5'GT 29989225 Upstream 100bp
chr10 72326433 72326433 1 + C T UCEC 72326417 + 72326397 72326437 41 AGCGGGGAGGACCAGCCCTTCTCCAGGCTGCGCTACCGGTG AGCGGGGAGGACCAGCCCTTCTCCAGGCTGCGCTACTGGTG < 41bp 1 0.763386196070424 1 0.904783964157104 experiment 0.473227607859152 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72326417 chr10:72326433 nonsynonymous SNV 0.806 4 37 hm5C_associated_SNPs_43277 0 0 0 0 1 PALD1 chr10:72326337 3'AG 72326337 Downstream 97bp
chr5 17275336 17275336 1 + A C UCEC 17275338 + 17275318 17275358 41 ACTCCAAGATGGGAGGCAAGCTCAGCAAGAAGAAGAAGGGC ACTCCAAGATGGGAGGCACGCTCAGCAAGAAGAAGAAGGGC < 41bp 1 0.652242324741596 1 0.185456037521362 experiment 0.695515350516808 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275338 chr5:17275336 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_43283 0 0 1 0 1 BASP1 chr5:17275317 3'AG 17275317 Downstream 20bp
chr7 131128396 131128396 1 + G A UCEC 131128390 + 131128370 131128410 41 GTCAAACCTGGAAACTTCTTCGAGAGGACTCCTGTAATGCT GTCAAACCTGGAAACTTCTTCGAGAGAACTCCTGTAATGCT < 41bp 1 0.738005900879593 1 0.769102811813354 experiment 0.523988198240814 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MKLN1 ENSG00000128585 CDS Human protein_coding chr7:131128390 chr7:131128396 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_43284 0 0 1 0 1 MKLN1 chr7:131128461 5'GT 131128461 Upstream 66bp
chr1 39926400 39926400 1 + C T UCEC 39926397 + 39926377 39926417 41 CTCGAGTGATGGATTTCTTCCGGCGCATTGATAAGGACCAG CTCGAGTGATGGATTTCTTCCGGTGCATTGATAAGGACCAG < 41bp 1 0.135744780244119 1 0.864873886108398 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39926397 chr1:39926400 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_43285 0 0 1 0 2 MACF1 chr1:39926304 3'AG 39926304 Downstream 97bp
chr1 39926400 39926400 1 + C T UCEC 39926397 + 39926377 39926417 41 CTCGAGTGATGGATTTCTTCCGGCGCATTGATAAGGACCAG CTCGAGTGATGGATTTCTTCCGGTGCATTGATAAGGACCAG < 41bp 1 0.135744780244119 1 0.864873886108398 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39926397 chr1:39926400 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_43285 0 0 1 0 2 MACF1 chr1:39926466 5'GT 39926466 Upstream 67bp
chr6 25551213 25551213 1 + G T UCEC 25551227 + 25551207 25551247 41 CGACAAGACTTGATTCATGCCAGCACCGAAAAGATTTCTAT CGACAATACTTGATTCATGCCAGCACCGAAAAGATTTCTAT < 41bp 1 0.386097734793043 1 0.424963653087616 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25551227 chr6:25551213 nonsynonymous SNV 0.995 3 7 hm5C_associated_SNPs_43287 0 0 1 0 1 CARMIL1 chr6:25551138 3'AG 25551138 Downstream 76bp
chrX 9661249 9661249 1 + G T UCEC 9661244 + 9661224 9661264 41 CGGTTTTGCAAGAATATGGACGGAAGATGGTGAGTTCTGTG CGGTTTTGCAAGAATATGGACGGAATATGGTGAGTTCTGTG < 41bp 1 0.436505798687261 1 0.235132962465286 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBL1X ENSG00000101849 CDS Human protein_coding chrX:9661244 chrX:9661249 nonsynonymous SNV 0.910 5 26 hm5C_associated_SNPs_43293 0 0 0 0 2 TBL1X chrX:9661189 3'AG 9661189 Downstream 61bp
chrX 9661249 9661249 1 + G T UCEC 9661244 + 9661224 9661264 41 CGGTTTTGCAAGAATATGGACGGAAGATGGTGAGTTCTGTG CGGTTTTGCAAGAATATGGACGGAATATGGTGAGTTCTGTG < 41bp 1 0.436505798687261 1 0.235132962465286 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBL1X ENSG00000101849 CDS Human protein_coding chrX:9661244 chrX:9661249 nonsynonymous SNV 0.910 5 26 hm5C_associated_SNPs_43293 0 0 0 0 2 TBL1X chrX:9661252 5'GT 9661252 Upstream 4bp
chr12 125603198 125603198 1 + G T UCEC 125603189 + 125603169 125603209 41 TCCCTCCTGTCTTTGCAGGTCGGCTGGATGATGTGGAACTG TCCCTCCTGTCTTTGCAGGTCGGCTGGATTATGTGGAACTG < 41bp 1 0.540615298014164 1 0.443799167871475 experiment 0.918769403971672 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AACS ENSG00000081760 CDS Human protein_coding chr12:125603189 chr12:125603198 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_43294 0 0 0 0 1 AACS chr12:125603187 3'AG 125603187 Downstream 12bp
chr2 24888650 24888650 1 + A C UCEC 24888633 + 24888613 24888653 41 AACAGCACGGAAAAGAGGCGCAGGGAGCAAGAAAATAAATA AACAGCACGGAAAAGAGGCGCAGGGAGCAAGAAAATACATA < 41bp 1 0.32602207521723 1 0.600242674350739 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24888633 chr2:24888650 nonsynonymous SNV 0.997 5 38 hm5C_associated_SNPs_43295 0 0 1 0 1 NCOA1 chr2:24888618 3'AG 24888618 Downstream 33bp
chr7 101837150 101837150 1 + T C UCEC 101837147 + 101837127 101837167 41 TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA TGAAGTCCATGGAGTTTGCACCGCCCGAGGGCGCTGGGACA < 41bp 1 0.0443910122429204 1 0.214567929506302 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837147 chr7:101837150 nonsynonymous SNV 0.416 1 24 hm5C_associated_SNPs_43297 0 0 1 0 2 CUX1 chr7:101837122 3'AG 101837122 Downstream 29bp
chr7 101837150 101837150 1 + T C UCEC 101837147 + 101837127 101837167 41 TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA TGAAGTCCATGGAGTTTGCACCGCCCGAGGGCGCTGGGACA < 41bp 1 0.0443910122429204 1 0.214567929506302 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837147 chr7:101837150 nonsynonymous SNV 0.416 1 24 hm5C_associated_SNPs_43297 0 0 1 0 2 CUX1 chr7:101837170 5'GT 101837170 Upstream 21bp
chr7 101837150 101837150 1 + T C UCEC 101837148 + 101837128 101837168 41 GAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC GAAGTCCATGGAGTTTGCACCGCCCGAGGGCGCTGGGACAC < 41bp 1 0.215849959436886 1 0.61100161075592 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837148 chr7:101837150 nonsynonymous SNV 0.416 1 23 hm5C_associated_SNPs_43298 0 0 1 0 2 CUX1 chr7:101837122 3'AG 101837122 Downstream 29bp
chr7 101837150 101837150 1 + T C UCEC 101837148 + 101837128 101837168 41 GAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC GAAGTCCATGGAGTTTGCACCGCCCGAGGGCGCTGGGACAC < 41bp 1 0.215849959436886 1 0.61100161075592 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837148 chr7:101837150 nonsynonymous SNV 0.416 1 23 hm5C_associated_SNPs_43298 0 0 1 0 2 CUX1 chr7:101837170 5'GT 101837170 Upstream 21bp
chrX 70776888 70776888 1 + A G UCEC 70776893 + 70776873 70776913 41 GAGCCTTGCAGTGTTATACGCGTGCCATCCAAATTAATCCT GAGCCTTGCAGTGTTGTACGCGTGCCATCCAAATTAATCCT < 41bp 1 0.226573646715895 1 0.0445112287998199 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70776893 chrX:70776888 nonsynonymous SNV 0.997 4 16 hm5C_associated_SNPs_43299 0 0 1 0 2 OGT chrX:70776802 3'AG 70776802 Downstream 87bp
chrX 70776888 70776888 1 + A G UCEC 70776893 + 70776873 70776913 41 GAGCCTTGCAGTGTTATACGCGTGCCATCCAAATTAATCCT GAGCCTTGCAGTGTTGTACGCGTGCCATCCAAATTAATCCT < 41bp 1 0.226573646715895 1 0.0445112287998199 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70776893 chrX:70776888 nonsynonymous SNV 0.997 4 16 hm5C_associated_SNPs_43299 0 0 1 0 2 OGT chrX:70776955 5'GT 70776955 Upstream 68bp
chr11 70181778 70181778 1 + G T UCEC 70181768 + 70181748 70181788 41 ATGAGAGGCTTCAACTTCATCTTAAAGAGAGAATGGCTGCT ATGAGAGGCTTCAACTTCATCTTAAAGAGATAATGGCTGCT < 41bp 1 0.229950504901971 1 0.279085218906403 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70181768 chr11:70181778 nonsynonymous SNV 0.994 3 31 hm5C_associated_SNPs_43305 0 0 1 0 1 PPFIA1 chr11:70181800 5'GT 70181800 Upstream 23bp
chr1 198233309 198233309 1 + G T UCEC 198233296 + 198233276 198233316 41 ATAAAATATTATGCATCATTCATTGAAGATAATGAACTAAA ATAAAATATTATGCATCATTCATTGAAGATAATTAACTAAA < 41bp 1 0.12808162700761 1 0.368995100259781 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233296 chr1:198233309 stopgain 1.000 1 34 hm5C_associated_SNPs_43306 0 0 1 0 2 NEK7 chr1:198233255 3'AG 198233255 Downstream 55bp
chr1 198233309 198233309 1 + G T UCEC 198233296 + 198233276 198233316 41 ATAAAATATTATGCATCATTCATTGAAGATAATGAACTAAA ATAAAATATTATGCATCATTCATTGAAGATAATTAACTAAA < 41bp 1 0.12808162700761 1 0.368995100259781 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233296 chr1:198233309 stopgain 1.000 1 34 hm5C_associated_SNPs_43306 0 0 1 0 2 NEK7 chr1:198233365 5'GT 198233365 Upstream 57bp
chr9 128678165 128678165 1 + A C UCEC 128678180 + 128678160 128678200 41 CCCAGATCAGACAAATCTATCACACAGAACTGGAGAAATAT CCCAGCTCAGACAAATCTATCACACAGAACTGGAGAAATAT < 41bp 1 0.194283998111301 1 0.123647302389145 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PBX3 ENSG00000167081 CDS Human protein_coding chr9:128678180 chr9:128678165 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_43307 0 0 0 0 1 PBX3 chr9:128678206 5'GT 128678206 Upstream 42bp
chr6 36175108 36175108 1 + A C UCEC 36175115 + 36175095 36175135 41 GCAGGATGAGAAGACAAGTGCAGTGAAGGAGGAGCTGAAGT GCAGGATGAGAAGCCAAGTGCAGTGAAGGAGGAGCTGAAGT < 41bp 1 0.277711225686123 1 0.704143822193146 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36175115 chr6:36175108 nonsynonymous SNV 0.998 2 14 hm5C_associated_SNPs_43308 0 0 1 0 1 BRPF3 chr6:36175090 3'AG 36175090 Downstream 19bp
chr12 64810527 64810527 1 + A C UCEC 64810521 + 64810501 64810541 41 GCTTTCAAGTACTGGAACATCAAGTTAAATACAAGTAAGGC GCTTTCAAGTACTGGAACATCAAGTTCAATACAAGTAAGGC < 41bp 1 0.505933701090385 1 0.545646131038666 experiment 0.98813259781923 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XPOT ENSG00000184575 CDS Human protein_coding chr12:64810521 chr12:64810527 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_43311 0 0 1 0 2 XPOT chr12:64810478 3'AG 64810478 Downstream 50bp
chr12 64810527 64810527 1 + A C UCEC 64810521 + 64810501 64810541 41 GCTTTCAAGTACTGGAACATCAAGTTAAATACAAGTAAGGC GCTTTCAAGTACTGGAACATCAAGTTCAATACAAGTAAGGC < 41bp 1 0.505933701090385 1 0.545646131038666 experiment 0.98813259781923 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XPOT ENSG00000184575 CDS Human protein_coding chr12:64810521 chr12:64810527 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_43311 0 0 1 0 2 XPOT chr12:64810534 5'GT 64810534 Upstream 8bp
chr1 198222180 198222180 1 + G A UCEC 198222182 + 198222162 198222202 41 AATTACAGAAGGCCTTACGACCGGATATGGGCTATAATACA AATTACAGAAGGCCTTACAACCGGATATGGGCTATAATACA < 41bp 1 0.633175392452268 1 0.840398550033569 experiment 0.733649215095465 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NEK7 ENSG00000151414 CDS Human protein_coding chr1:198222182 chr1:198222180 nonsynonymous SNV 0.999 1 19 hm5C_associated_SNPs_43313 0 0 1 0 1 NEK7 chr1:198222170 3'AG 198222170 Downstream 11bp
chr1 198222180 198222180 1 + G A UCEC 198222183 + 198222163 198222203 41 ATTACAGAAGGCCTTACGACCGGATATGGGCTATAATACAT ATTACAGAAGGCCTTACAACCGGATATGGGCTATAATACAT < 41bp 1 0.546737383178731 1 0.705528020858765 experiment 0.906525233642538 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NEK7 ENSG00000151414 CDS Human protein_coding chr1:198222183 chr1:198222180 nonsynonymous SNV 0.999 1 18 hm5C_associated_SNPs_43314 0 0 1 0 1 NEK7 chr1:198222170 3'AG 198222170 Downstream 11bp
chr7 129950688 129950688 1 + A G UCEC 129950671 + 129950651 129950691 41 GCTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTG GCTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAGGTG < 41bp 1 0.586253277385692 1 0.0540202856063843 experiment 0.827493445228617 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950671 chr7:129950688 synonymous SNV . 0 38 hm5C_associated_SNPs_43315 0 0 0 0 1 CPA4 chr7:129950627 3'AG 129950627 Downstream 62bp
chr7 129950688 129950688 1 + A G UCEC 129950672 + 129950652 129950692 41 CTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTGG CTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAGGTGG < 41bp 1 0.110756363686911 1 0.0379899144172668 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950672 chr7:129950688 synonymous SNV . 0 37 hm5C_associated_SNPs_43316 0 0 0 0 1 CPA4 chr7:129950627 3'AG 129950627 Downstream 62bp
chr13 77570192 77570192 1 + C T UCEC 77570189 + 77570169 77570209 41 TGGTGTAATCAAGGCGCTGCCTGCTTTTTTGAGGGAATTGA TGGTGTAATCAAGGCGCTGCCTGTTTTTTTGAGGGAATTGA < 41bp 1 0.422000691616503 1 0.0906981825828552 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLN5 ENSG00000102805 CDS Human protein_coding chr13:77570189 chr13:77570192 synonymous SNV . 0 24 hm5C_associated_SNPs_43317 0 0 1 0 1 CLN5 chr13:77570262 5'GT 77570262 Upstream 71bp
chr2 109367738 109367738 1 + A C UCEC 109367752 + 109367732 109367772 41 CACATAATGGTAGTCTTCAGCACCTTACTTGGCTTGGCTTA CACATACTGGTAGTCTTCAGCACCTTACTTGGCTTGGCTTA < 41bp 1 0.273647211195271 1 0.410289138555527 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109367752 chr2:109367738 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_43318 0 0 0 0 1 RANBP2 chr2:109367720 3'AG 109367720 Downstream 19bp
chr14 102484870 102484870 1 + G T UCEC 102484854 + 102484834 102484874 41 GCCTCCCTCACACAGATCTACGGCACCTTCAACCGCGCCAT GCCTCCCTCACACAGATCTACGGCACCTTCAACCGCTCCAT < 41bp 1 0.352639361492788 1 0.297518134117126 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102484854 chr14:102484870 nonsynonymous SNV 0.985 4 37 hm5C_associated_SNPs_43319 0 0 1 0 2 DYNC1H1 chr14:102484788 3'AG 102484788 Downstream 83bp
chr14 102484870 102484870 1 + G T UCEC 102484854 + 102484834 102484874 41 GCCTCCCTCACACAGATCTACGGCACCTTCAACCGCGCCAT GCCTCCCTCACACAGATCTACGGCACCTTCAACCGCTCCAT < 41bp 1 0.352639361492788 1 0.297518134117126 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102484854 chr14:102484870 nonsynonymous SNV 0.985 4 37 hm5C_associated_SNPs_43319 0 0 1 0 2 DYNC1H1 chr14:102484953 5'GT 102484953 Upstream 84bp
chr14 102484870 102484870 1 + G T UCEC 102484872 + 102484852 102484892 41 TACGGCACCTTCAACCGCGCCATGCTGAGGCTCATTCCATC TACGGCACCTTCAACCGCTCCATGCTGAGGCTCATTCCATC < 41bp 1 0.063619357258663 1 0.0661492347717285 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102484872 chr14:102484870 nonsynonymous SNV 0.985 4 19 hm5C_associated_SNPs_43320 0 0 1 0 2 DYNC1H1 chr14:102484788 3'AG 102484788 Downstream 83bp
chr14 102484870 102484870 1 + G T UCEC 102484872 + 102484852 102484892 41 TACGGCACCTTCAACCGCGCCATGCTGAGGCTCATTCCATC TACGGCACCTTCAACCGCTCCATGCTGAGGCTCATTCCATC < 41bp 1 0.063619357258663 1 0.0661492347717285 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102484872 chr14:102484870 nonsynonymous SNV 0.985 4 19 hm5C_associated_SNPs_43320 0 0 1 0 2 DYNC1H1 chr14:102484953 5'GT 102484953 Upstream 84bp
chr11 764325 764325 1 + G T UCEC 764334 + 764314 764354 41 CACCTGGATGAGAAGTCTTTCCGTTGGTTGCACAACGAGGA CACCTGGATGATAAGTCTTTCCGTTGGTTGCACAACGAGGA < 41bp 1 0.171206242179714 1 0.286462783813477 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control TALDO1 ENSG00000177156 CDS Human protein_coding chr11:764334 chr11:764325 nonsynonymous SNV 0.989 5 12 hm5C_associated_SNPs_43321 0 0 1 0 1 TALDO1 chr11:764288 3'AG 764288 Downstream 38bp
chr11 43413475 43413475 1 + T C UCEC 43413476 + 43413456 43413496 41 GGAGTATAGATGACATAGGTCACCTCATTCATGAAGGCCTA GGAGTATAGATGACATAGGCCACCTCATTCATGAAGGCCTA < 41bp 1 0.273708968997949 1 0.0621383190155029 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TTC17 ENSG00000052841 CDS Human protein_coding chr11:43413476 chr11:43413475 synonymous SNV . 0 20 hm5C_associated_SNPs_43322 0 0 1 0 1 TTC17 chr11:43413502 5'GT 43413502 Upstream 28bp
chr12 94563018 94563018 1 + A C UCEC 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTCAT < 41bp 1 0.0781452934409065 1 0.0791213810443878 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94563018 synonymous SNV . 0 39 hm5C_associated_SNPs_43324 0 0 1 0 2 PLXNC1 chr12:94562929 3'AG 94562929 Downstream 90bp
chr12 94563018 94563018 1 + A C UCEC 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTCAT < 41bp 1 0.0781452934409065 1 0.0791213810443878 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94563018 synonymous SNV . 0 39 hm5C_associated_SNPs_43324 0 0 1 0 2 PLXNC1 chr12:94563069 5'GT 94563069 Upstream 52bp
chr7 130020954 130020954 1 + A G UCEC 130020965 + 130020945 130020985 41 GGTGCTCCGAATCTCTGTAGCCGATGAGGCCCAGGTACAGA GGTGCTCCGGATCTCTGTAGCCGATGAGGCCCAGGTACAGA < 41bp 1 0.342708601920518 1 0.211583971977234 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130020965 chr7:130020954 synonymous SNV . 0 10 hm5C_associated_SNPs_43325 0 0 0 0 2 CPA1 chr7:130020939 3'AG 130020939 Downstream 16bp
chr7 130020954 130020954 1 + A G UCEC 130020965 + 130020945 130020985 41 GGTGCTCCGAATCTCTGTAGCCGATGAGGCCCAGGTACAGA GGTGCTCCGGATCTCTGTAGCCGATGAGGCCCAGGTACAGA < 41bp 1 0.342708601920518 1 0.211583971977234 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130020965 chr7:130020954 synonymous SNV . 0 10 hm5C_associated_SNPs_43325 0 0 0 0 2 CPA1 chr7:130021020 5'GT 130021020 Upstream 67bp
chr5 127522285 127522285 1 + C T UCEC 127522271 + 127522251 127522291 41 TCTATCTAAGGACCTACCACCAATCCTCCTAGTTCGTGGGA TCTATCTAAGGACCTACCACCAATCCTCCTAGTTTGTGGGA < 41bp 1 0.0630831240775422 1 0.724978685379028 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC12A2 ENSG00000064651 CDS Human protein_coding chr5:127522271 chr5:127522285 nonsynonymous SNV 0.987 5 35 hm5C_associated_SNPs_43326 0 0 1 0 1 SLC12A2 chr5:127522188 3'AG 127522188 Downstream 98bp
chr4 37857247 37857247 1 + A C UCEC 37857261 + 37857241 37857281 41 AGTAAAAGCAGCCAAATGATCACCTTCACCTTTGCTAATGG AGTAAACGCAGCCAAATGATCACCTTCACCTTTGCTAATGG < 41bp 1 0.619159116246974 1 0.190731853246689 experiment 0.761681767506052 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PGM2 ENSG00000169299 CDS Human protein_coding chr4:37857261 chr4:37857247 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_43327 0 0 0 0 1 PGM2 chr4:37857229 3'AG 37857229 Downstream 19bp
chr17 8172158 8172158 1 + G T UCEC 8172177 + 8172157 8172197 41 GGAGTGCGCACGGGGAAGGTCAGGCCCAAGGAAGGCTGGGG GTAGTGCGCACGGGGAAGGTCAGGCCCAAGGAAGGCTGGGG < 41bp 1 0.560009730588745 1 0.799729824066162 experiment 0.879980538822511 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PFAS ENSG00000178921 CDS Human protein_coding chr17:8172177 chr17:8172158 nonsynonymous SNV 0.947 4 2 hm5C_associated_SNPs_43328 0 0 1 0 1 PFAS chr17:8172174 5'GT 8172174 Upstream 17bp
chrX 123190069 123190069 1 + G T UCEC 123190075 + 123190055 123190095 41 CAGTAGCAGCTGGAGAATTTCTCTACAAAAAGTAAATCTAT CAGTAGCAGCTGGATAATTTCTCTACAAAAAGTAAATCTAT < 41bp 1 0.513070628542924 1 0.941492080688477 experiment 0.973858742914151 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123190075 chrX:123190069 stopgain 1.000 1 15 hm5C_associated_SNPs_43330 0 0 1 0 2 STAG2 chrX:123189978 3'AG 123189978 Downstream 92bp
chrX 123190069 123190069 1 + G T UCEC 123190075 + 123190055 123190095 41 CAGTAGCAGCTGGAGAATTTCTCTACAAAAAGTAAATCTAT CAGTAGCAGCTGGATAATTTCTCTACAAAAAGTAAATCTAT < 41bp 1 0.513070628542924 1 0.941492080688477 experiment 0.973858742914151 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123190075 chrX:123190069 stopgain 1.000 1 15 hm5C_associated_SNPs_43330 0 0 1 0 2 STAG2 chrX:123190085 5'GT 123190085 Upstream 17bp
chr22 45579398 45579398 1 + T G UCEC 45579387 + 45579367 45579407 41 GACACAGCTTTTGGTGCGGGCAGACACCAATTTAGGTGGGT GACACAGCTTTTGGTGCGGGCAGACACCAATGTAGGTGGGT < 41bp 1 0.111483163288223 1 0.41553196310997 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NUP50 ENSG00000093000 CDS Human protein_coding chr22:45579387 chr22:45579398 nonsynonymous SNV 0.999 1 32 hm5C_associated_SNPs_43331 0 0 1 0 1 NUP50 chr22:45579401 5'GT 45579401 Upstream 4bp
chrX 110951600 110951600 1 + C A UCEC 110951614 + 110951594 110951634 41 TTGCCTCTTTCGGGCCATTTCGGAGCAGGTAAAAGGAAAAC TTGCCTATTTCGGGCCATTTCGGAGCAGGTAAAAGGAAAAC < 41bp 1 0.767788706302257 1 0.764154195785522 experiment 0.464422587395486 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG13 ENSG00000101901 CDS Human protein_coding chrX:110951614 chrX:110951600 synonymous SNV . 0 7 hm5C_associated_SNPs_43333 0 0 1 0 1 ALG13 chrX:110951621 5'GT 110951621 Upstream 22bp
chrX 110951600 110951600 1 + C A UCEC 110951619 + 110951599 110951639 41 TCTTTCGGGCCATTTCGGAGCAGGTAAAAGGAAAACATATC TATTTCGGGCCATTTCGGAGCAGGTAAAAGGAAAACATATC < 41bp 1 0.470433991983063 1 0.870934247970581 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG13 ENSG00000101901 CDS Human protein_coding chrX:110951619 chrX:110951600 synonymous SNV . 0 2 hm5C_associated_SNPs_43334 0 0 1 0 1 ALG13 chrX:110951621 5'GT 110951621 Upstream 22bp
chr22 18979468 18979468 1 + T G UCEC 18979466 + 18979446 18979486 41 AGATGGAGAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAAC AGATGGAGAAGCGAACCAAGCCGGTCTGTGTGTTCTGGAAC < 41bp 1 0.363267321593334 1 0.309418529272079 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979466 chr22:18979468 . . 0 23 hm5C_associated_SNPs_43335 0 0 0 0 1 DGCR5 chr22:18979530 5'GT 18979530 Upstream 63bp
chr13 77574678 77574678 1 + C T UCEC 77574692 + 77574672 77574712 41 AGCCAGCCCAGAAAAGGGGGCAGAGACATGGTTTGATTCCT AGCCAGTCCAGAAAAGGGGGCAGAGACATGGTTTGATTCCT < 41bp 1 0.282009650975948 1 0.279962033033371 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLN5 ENSG00000102805 CDS Human protein_coding chr13:77574692 chr13:77574678 synonymous SNV . 0 7 hm5C_associated_SNPs_43336 0 0 0 0 1 CLN5 chr13:77574593 3'AG 77574593 Downstream 86bp
chr16 58073998 58073998 1 + C A UCEC 58073989 + 58073969 58074009 41 CCGTTTGATGGCACCGGTGGCTTTCTGGCCCACGCCTATTT CCGTTTGATGGCACCGGTGGCTTTCTGGCACACGCCTATTT < 41bp 1 0.0626735294272025 1 0.0257281363010406 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MMP15 ENSG00000102996 CDS Human protein_coding chr16:58073989 chr16:58073998 synonymous SNV . 0 30 hm5C_associated_SNPs_43337 0 0 0 0 1 MMP15 chr16:58074086 5'GT 58074086 Upstream 89bp
chr17 17061785 17061785 1 + T C UCEC 17061773 + 17061753 17061793 41 CCAGAGGAAAAAAACAAGAGCAGCTGCTCTTTTGAGACCTG CCAGAGGAAAAAAACAAGAGCAGCTGCTCTTTCGAGACCTG < 41bp 1 0.100794710965395 1 0.328359097242355 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17061773 chr17:17061785 synonymous SNV . 0 33 hm5C_associated_SNPs_43338 0 0 1 0 1 MPRIP chr17:17061746 3'AG 17061746 Downstream 40bp
chr16 78143703 78143703 1 + T G UCEC 78143695 + 78143675 78143715 41 ATTTGCCATACGGATGGGAACAAGAAACTGATGAGAACGGA ATTTGCCATACGGATGGGAACAAGAAACGGATGAGAACGGA < 41bp 1 0.422559487470321 1 0.444598853588104 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WWOX ENSG00000186153 CDS Human protein_coding chr16:78143695 chr16:78143703 stoploss 0.995 0 29 hm5C_associated_SNPs_43342 0 0 1 0 2 WWOX chr16:78143675 3'AG 78143675 Downstream 29bp
chr16 78143703 78143703 1 + T G UCEC 78143695 + 78143675 78143715 41 ATTTGCCATACGGATGGGAACAAGAAACTGATGAGAACGGA ATTTGCCATACGGATGGGAACAAGAAACGGATGAGAACGGA < 41bp 1 0.422559487470321 1 0.444598853588104 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WWOX ENSG00000186153 CDS Human protein_coding chr16:78143695 chr16:78143703 stoploss 0.995 0 29 hm5C_associated_SNPs_43342 0 0 1 0 2 WWOX chr16:78143732 5'GT 78143732 Upstream 30bp
chr2 113309368 113309368 1 + C A UCEC 113309353 + 113309333 113309373 41 CTTTTATTTTCTATTCTAGGCACTTGTCAGCTTTTCTGATT CTTTTATTTTCTATTCTAGGCACTTGTCAGCTTTTATGATT < 41bp 1 0.0684754848134016 1 0.0411527752876282 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113309353 chr2:113309368 nonsynonymous SNV 0.990 4 36 hm5C_associated_SNPs_43343 0 0 1 0 1 POLR1B chr2:113309352 3'AG 113309352 Downstream 17bp
chr1 201163359 201163359 1 + C T UCEC 201163360 + 201163340 201163380 41 CCCTGAAGGCTGCAGCACGCCGGACTTTGAGCAGAAGCCCG CCCTGAAGGCTGCAGCACGTCGGACTTTGAGCAGAAGCCCG < 41bp 1 0.380655397025918 1 0.515500724315643 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201163360 chr1:201163359 nonsynonymous SNV 0.993 1 20 hm5C_associated_SNPs_43345 0 0 0 0 1 IGFN1 chr1:201163282 3'AG 201163282 Downstream 78bp
chr2 27157543 27157543 1 + G A UCEC 27157542 + 27157522 27157562 41 CCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG CCACGCGGCTGCCTATGTCACAGTGCCTCCCCTGAGACTGG < 41bp 1 0.345807958614373 1 0.716585278511047 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157542 chr2:27157543 synonymous SNV . 0 22 hm5C_associated_SNPs_43346 0 0 0 0 2 DPYSL5 chr2:27157446 3'AG 27157446 Downstream 98bp
chr2 27157543 27157543 1 + G A UCEC 27157542 + 27157522 27157562 41 CCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG CCACGCGGCTGCCTATGTCACAGTGCCTCCCCTGAGACTGG < 41bp 1 0.345807958614373 1 0.716585278511047 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157542 chr2:27157543 synonymous SNV . 0 22 hm5C_associated_SNPs_43346 0 0 0 0 2 DPYSL5 chr2:27157602 5'GT 27157602 Upstream 60bp
chr11 810347 810347 1 + G T UCEC 810346 + 810326 810366 41 GTATCGAGGCGGACGACGACCGGCTCAACAAGGTAGCGGCC GTATCGAGGCGGACGACGACCTGCTCAACAAGGTAGCGGCC < 41bp 1 0.694870325284311 1 0.121892929077148 experiment 0.610259349431377 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPLP2 ENSG00000177600 CDS Human protein_coding chr11:810346 chr11:810347 nonsynonymous SNV 0.928 2 22 hm5C_associated_SNPs_43347 0 0 1 0 1 RPLP2 chr11:810357 5'GT 810357 Upstream 11bp
chr8 56864629 56864629 1 + C T UCEC 56864624 + 56864604 56864644 41 TAATGGGGGCTATTACATCTCTCCACGAATCACTTTTCCCT TAATGGGGGCTATTACATCTCTCCATGAATCACTTTTCCCT < 41bp 1 0.793648996697682 1 0.936168432235718 experiment 0.412702006604635 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56864624 chr8:56864629 stopgain 0.997 1 26 hm5C_associated_SNPs_43350 0 0 1 0 1 LYN chr8:56864674 5'GT 56864674 Upstream 46bp
chr16 842481 842481 1 + C A UCEC 842482 + 842462 842502 41 CATCCTGAACCGCAAGGGGCCACAGGAGGTGGGGCCACAGG CATCCTGAACCGCAAGGGGACACAGGAGGTGGGGCCACAGG < 41bp 1 0.530607199774287 1 0.215890467166901 experiment 0.938785600451426 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842482 chr16:842481 nonsynonymous SNV 0.005 0 20 hm5C_associated_SNPs_43351 0 0 1 0 1 CHTF18 chr16:842439 3'AG 842439 Downstream 43bp
chr2 42886997 42886997 1 + A T UCEC 42886977 + 42886957 42886997 41 TAGTTTGCATATGAGTGCTGCTGCAGCTTCCCGAGACATCA TAGTTTGCATATGAGTGCTGCTGCAGCTTCCCGAGACATCT < 41bp 1 0.275659916474752 1 0.268521547317505 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTA3 ENSG00000057935 CDS Human protein_coding chr2:42886977 chr2:42886997 nonsynonymous SNV 0.997 1 41 hm5C_associated_SNPs_43353 0 0 1 0 2 MTA3 chr2:42886903 3'AG 42886903 Downstream 95bp
chr2 42886997 42886997 1 + A T UCEC 42886977 + 42886957 42886997 41 TAGTTTGCATATGAGTGCTGCTGCAGCTTCCCGAGACATCA TAGTTTGCATATGAGTGCTGCTGCAGCTTCCCGAGACATCT < 41bp 1 0.275659916474752 1 0.268521547317505 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTA3 ENSG00000057935 CDS Human protein_coding chr2:42886977 chr2:42886997 nonsynonymous SNV 0.997 1 41 hm5C_associated_SNPs_43353 0 0 1 0 2 MTA3 chr2:42887002 5'GT 42887002 Upstream 6bp
chr11 4112570 4112570 1 + G A UCEC 4112557 + 4112537 4112577 41 TCCTCCCTCCACATGAGTGACCGCCAGCGTGTGGCCCCCAA TCCTCCCTCCACATGAGTGACCGCCAGCGTGTGACCCCCAA < 41bp 1 0.155403087120557 1 0.0687461793422699 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STIM1 ENSG00000167323 CDS Human protein_coding chr11:4112557 chr11:4112570 nonsynonymous SNV 0.825 0 34 hm5C_associated_SNPs_43354 0 0 1 0 1 STIM1 chr11:4112512 3'AG 4112512 Downstream 59bp
chr16 705346 705346 1 + G A UCEC 705347 + 705327 705367 41 GCAGTGTGCGGCTCTGGCGGCTGCGTGGCGGGGTGCTGCGT GCAGTGTGCGGCTCTGGCGACTGCGTGGCGGGGTGCTGCGT < 41bp 1 0.533166550248517 1 0.481648564338684 experiment 0.933666899502966 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:705347 chr16:705346 synonymous SNV . 0 20 hm5C_associated_SNPs_43355 0 0 1 0 1 WDR90 chr16:705307 3'AG 705307 Downstream 40bp
chr11 67018210 67018210 1 + C T UCEC 67018208 + 67018188 67018228 41 AGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAGAGAA AGGTCTGGATGTCTGTCTTCCGTTACCTCAGCCGCAGAGAA < 41bp 1 0.236189158309329 1 0.140258431434631 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KDM2A ENSG00000173120 CDS Human protein_coding chr11:67018208 chr11:67018210 synonymous SNV . 0 23 hm5C_associated_SNPs_43356 0 0 1 0 1 KDM2A chr11:67018269 5'GT 67018269 Upstream 60bp
chr7 128846157 128846157 1 + C T UCEC 128846171 + 128846151 128846191 41 CACCTGCTCACCTGGTCACTCCCCTTTGTCCTCACTGTGGC CACCTGTTCACCTGGTCACTCCCCTTTGTCCTCACTGTGGC < 41bp 1 0.219186859517371 1 0.0458514988422394 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMO ENSG00000128602 CDS Human protein_coding chr7:128846171 chr7:128846157 nonsynonymous SNV 0.995 3 7 hm5C_associated_SNPs_43358 0 0 0 0 1 SMO chr7:128846210 5'GT 128846210 Upstream 54bp
chr11 837591 837591 1 + C G UCEC 837583 + 837563 837603 41 CGGTGGTGGCTCTTTGTGGGCAGCGAGACCATGCCTCCAAC CGGTGGTGGCTCTTTGTGGGCAGCGAGAGCATGCCTCCAAC < 41bp 1 0.791687342001968 1 0.277997374534607 experiment 0.416625315996063 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD151 ENSG00000177697 CDS Human protein_coding chr11:837583 chr11:837591 nonsynonymous SNV 0.916 0 29 hm5C_associated_SNPs_43359 0 0 1 1 1 CD151 chr11:837618 5'GT 837618 Upstream 28bp
chr3 57898200 57898200 1 + C T UCEC 57898199 + 57898179 57898219 41 AGAGATGAATTGCTTAGTGCCCGAGATGAAATTTTGCTCCT AGAGATGAATTGCTTAGTGCCTGAGATGAAATTTTGCTCCT < 41bp 1 0.760804194203135 1 0.643273293972015 experiment 0.47839161159373 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLMAP ENSG00000163681 CDS Human protein_coding chr3:57898199 chr3:57898200 stopgain 0.988 1 22 hm5C_associated_SNPs_43360 0 0 1 0 1 SLMAP chr3:57898108 3'AG 57898108 Downstream 93bp
chr14 105959048 105959048 1 + G A UCEC 105959051 + 105959031 105959071 41 TGGTGTCCAGTCAGCAGGAGCAGTGCGCCCTCCTGAGCAAG TGGTGTCCAGTCAGCAGAAGCAGTGCGCCCTCCTGAGCAAG < 41bp 1 0.387190834469223 1 0.281623989343643 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105959051 chr14:105959048 nonsynonymous SNV 0.998 4 18 hm5C_associated_SNPs_43361 0 0 1 0 1 C14orf80 chr14:105959071 5'GT 105959071 Upstream 24bp
chr1 23408755 23408755 1 + G A UCEC 23408765 + 23408745 23408785 41 TGATCCCTGGGCTCGGGGCTCTTATTCCTATGTTGCTGCAG TGATCCCTGGACTCGGGGCTCTTATTCCTATGTTGCTGCAG < 41bp 1 0.123860500640321 1 0.101054280996323 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1A ENSG00000004487 CDS Human protein_coding chr1:23408765 chr1:23408755 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_43362 0 0 1 0 1 KDM1A chr1:23408713 3'AG 23408713 Downstream 43bp
chr14 102484866 102484866 1 + C T UCEC 102484854 + 102484834 102484874 41 GCCTCCCTCACACAGATCTACGGCACCTTCAACCGCGCCAT GCCTCCCTCACACAGATCTACGGCACCTTCAATCGCGCCAT < 41bp 1 0.397353133360104 1 0.443766862154007 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102484854 chr14:102484866 synonymous SNV . 0 33 hm5C_associated_SNPs_43363 0 0 1 0 2 DYNC1H1 chr14:102484788 3'AG 102484788 Downstream 79bp
chr14 102484866 102484866 1 + C T UCEC 102484854 + 102484834 102484874 41 GCCTCCCTCACACAGATCTACGGCACCTTCAACCGCGCCAT GCCTCCCTCACACAGATCTACGGCACCTTCAATCGCGCCAT < 41bp 1 0.397353133360104 1 0.443766862154007 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102484854 chr14:102484866 synonymous SNV . 0 33 hm5C_associated_SNPs_43363 0 0 1 0 2 DYNC1H1 chr14:102484953 5'GT 102484953 Upstream 88bp
chr14 102484866 102484866 1 + C T UCEC 102484872 + 102484852 102484892 41 TACGGCACCTTCAACCGCGCCATGCTGAGGCTCATTCCATC TACGGCACCTTCAATCGCGCCATGCTGAGGCTCATTCCATC < 41bp 1 0.0555281837197756 1 0.132000625133514 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102484872 chr14:102484866 synonymous SNV . 0 15 hm5C_associated_SNPs_43364 0 0 1 0 2 DYNC1H1 chr14:102484788 3'AG 102484788 Downstream 79bp
chr14 102484866 102484866 1 + C T UCEC 102484872 + 102484852 102484892 41 TACGGCACCTTCAACCGCGCCATGCTGAGGCTCATTCCATC TACGGCACCTTCAATCGCGCCATGCTGAGGCTCATTCCATC < 41bp 1 0.0555281837197756 1 0.132000625133514 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102484872 chr14:102484866 synonymous SNV . 0 15 hm5C_associated_SNPs_43364 0 0 1 0 2 DYNC1H1 chr14:102484953 5'GT 102484953 Upstream 88bp
chr19 803572 803572 1 + C G UCEC 803568 + 803548 803588 41 CCTTCTCTTGCAGCGGGGATCTGACGAGCTTTTCTCTACTT CCTTCTCTTGCAGCGGGGATCTGAGGAGCTTTTCTCTACTT < 41bp 1 0.710710574352552 1 0.503421306610107 experiment 0.578578851294896 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:803568 chr19:803572 nonsynonymous SNV 0.970 0 25 hm5C_associated_SNPs_43365 0 0 1 0 2 PTBP1 chr19:803561 3'AG 803561 Downstream 12bp
chr19 803572 803572 1 + C G UCEC 803568 + 803548 803588 41 CCTTCTCTTGCAGCGGGGATCTGACGAGCTTTTCTCTACTT CCTTCTCTTGCAGCGGGGATCTGAGGAGCTTTTCTCTACTT < 41bp 1 0.710710574352552 1 0.503421306610107 experiment 0.578578851294896 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:803568 chr19:803572 nonsynonymous SNV 0.970 0 25 hm5C_associated_SNPs_43365 0 0 1 0 2 PTBP1 chr19:803636 5'GT 803636 Upstream 65bp
chr5 149754338 149754338 1 + C T UCEC 149754323 + 149754303 149754343 41 GCGGGGAAGCGGGAGGAGGACTCGCAGAGCAGCAGCGAGGA GCGGGGAAGCGGGAGGAGGACTCGCAGAGCAGCAGTGAGGA < 41bp 1 0.53105436138435 1 0.376139402389526 experiment 0.9378912772313 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754323 chr5:149754338 synonymous SNV . 0 36 hm5C_associated_SNPs_43366 1 0 1 0 1 TCOF1 chr5:149754374 5'GT 149754374 Upstream 37bp
chr5 149754338 149754338 1 + C T UCEC 149754325 + 149754305 149754345 41 GGGGAAGCGGGAGGAGGACTCGCAGAGCAGCAGCGAGGAAT GGGGAAGCGGGAGGAGGACTCGCAGAGCAGCAGTGAGGAAT < 41bp 1 0.695635069028145 1 0.723336696624756 experiment 0.60872986194371 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754325 chr5:149754338 synonymous SNV . 0 34 hm5C_associated_SNPs_43367 1 0 1 0 1 TCOF1 chr5:149754374 5'GT 149754374 Upstream 37bp
chr5 149754338 149754338 1 + C T UCEC 149754335 + 149754315 149754355 41 GAGGAGGACTCGCAGAGCAGCAGCGAGGAATCGGACAGTGA GAGGAGGACTCGCAGAGCAGCAGTGAGGAATCGGACAGTGA < 41bp 1 0.330600488278397 1 0.214113026857376 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754335 chr5:149754338 synonymous SNV . 0 24 hm5C_associated_SNPs_43368 1 0 1 0 1 TCOF1 chr5:149754374 5'GT 149754374 Upstream 37bp
chr1 26136184 26136184 1 + G A UCEC 26136177 + 26136157 26136197 41 GATCCCCTTCCCCACAGGATCCATGCCGAGTTCCAGCTCAG GATCCCCTTCCCCACAGGATCCATGCCAAGTTCCAGCTCAG < 41bp 1 0.0944447652404557 1 0.0377747714519501 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136177 chr1:26136184 nonsynonymous SNV 0.944 5 28 hm5C_associated_SNPs_43370 0 0 1 0 1 SELENON chr1:26136174 3'AG 26136174 Downstream 11bp
chr17 4797386 4797386 1 + C T UCEC 4797367 + 4797347 4797387 41 ACCCAGCCCCCATACGGGGGCGGCACCATGGTGGTCCAGCG ACCCAGCCCCCATACGGGGGCGGCACCATGGTGGTCCAGTG < 41bp 1 0.478839863287739 1 0.170426100492477 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797367 chr17:4797386 nonsynonymous SNV 0.999 3 40 hm5C_associated_SNPs_43371 0 0 1 0 1 MINK1 chr17:4797388 5'GT 4797388 Upstream 3bp
chr20 32665002 32665002 1 + G A UCEC 32664995 + 32664975 32665015 41 GCCTGCCCCAGGGGGAAGCACGGACCCGAGACGACGGCGAT GCCTGCCCCAGGGGGAAGCACGGACCCAAGACGACGGCGAT < 41bp 1 0.395771171421529 1 0.774309992790222 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32664995 chr20:32665002 nonsynonymous SNV 0.029 0 28 hm5C_associated_SNPs_43372 0 0 1 0 1 RALY chr20:32665051 5'GT 32665051 Upstream 50bp
chr20 32665002 32665002 1 + G A UCEC 32664999 + 32664979 32665019 41 GCCCCAGGGGGAAGCACGGACCCGAGACGACGGCGATGAGG GCCCCAGGGGGAAGCACGGACCCAAGACGACGGCGATGAGG < 41bp 1 0.573093078546112 1 0.257423669099808 experiment 0.853813842907776 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32664999 chr20:32665002 nonsynonymous SNV 0.029 0 24 hm5C_associated_SNPs_43373 0 0 1 0 1 RALY chr20:32665051 5'GT 32665051 Upstream 50bp
chr20 32665002 32665002 1 + G A UCEC 32665000 + 32664980 32665020 41 CCCCAGGGGGAAGCACGGACCCGAGACGACGGCGATGAGGA CCCCAGGGGGAAGCACGGACCCAAGACGACGGCGATGAGGA < 41bp 1 0.223795918970785 1 0.403342008590698 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32665000 chr20:32665002 nonsynonymous SNV 0.029 0 23 hm5C_associated_SNPs_43374 0 0 1 0 1 RALY chr20:32665051 5'GT 32665051 Upstream 50bp
chr16 85839355 85839355 1 + C A UCEC 85839335 + 85839315 85839355 41 AATGGCTGTCCTCTCTGCCCCCAGTGTATCGCATTAAGTTC AATGGCTGTCCTCTCTGCCCCCAGTGTATCGCATTAAGTTA < 41bp 1 0.41532518145238 1 0.427894115447998 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control COX4I1 ENSG00000131143 CDS Human protein_coding chr16:85839335 chr16:85839355 nonsynonymous SNV 0.843 3 41 hm5C_associated_SNPs_43375 0 0 1 0 1 COX4I1 chr16:85839339 3'AG 85839339 Downstream 17bp
chr16 85839355 85839355 1 + C A UCEC 85839336 + 85839316 85839356 41 ATGGCTGTCCTCTCTGCCCCCAGTGTATCGCATTAAGTTCA ATGGCTGTCCTCTCTGCCCCCAGTGTATCGCATTAAGTTAA < 41bp 1 0.501625699688772 1 0.793993651866913 experiment 0.996748600622457 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control COX4I1 ENSG00000131143 CDS Human protein_coding chr16:85839336 chr16:85839355 nonsynonymous SNV 0.843 3 40 hm5C_associated_SNPs_43376 0 0 1 0 1 COX4I1 chr16:85839339 3'AG 85839339 Downstream 17bp
chr8 22037964 22037964 1 + G A UCEC 22037952 + 22037932 22037972 41 ACCCCAATGGCTACTCTGCTCACATGCACTGCGTGTGGCGC ACCCCAATGGCTACTCTGCTCACATGCACTGCATGTGGCGC < 41bp 1 0.374905505644244 1 0.0933316946029663 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037952 chr8:22037964 nonsynonymous SNV 0.930 2 33 hm5C_associated_SNPs_43377 0 0 0 0 2 BMP1 chr8:22037881 3'AG 22037881 Downstream 84bp
chr8 22037964 22037964 1 + G A UCEC 22037952 + 22037932 22037972 41 ACCCCAATGGCTACTCTGCTCACATGCACTGCGTGTGGCGC ACCCCAATGGCTACTCTGCTCACATGCACTGCATGTGGCGC < 41bp 1 0.374905505644244 1 0.0933316946029663 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037952 chr8:22037964 nonsynonymous SNV 0.930 2 33 hm5C_associated_SNPs_43377 0 0 0 0 2 BMP1 chr8:22037996 5'GT 22037996 Upstream 33bp
chr1 32620231 32620231 1 + G C UCEC 32620232 + 32620212 32620252 41 GACAATTATCGAATGAAGAGCTATAAGAACAATGCTCTAAA GACAATTATCGAATGAAGACCTATAAGAACAATGCTCTAAA < 41bp 1 0.250764770322725 1 0.333719849586487 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620232 chr1:32620231 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_43378 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 43bp
chr1 32620231 32620231 1 + G C UCEC 32620232 + 32620212 32620252 41 GACAATTATCGAATGAAGAGCTATAAGAACAATGCTCTAAA GACAATTATCGAATGAAGACCTATAAGAACAATGCTCTAAA < 41bp 1 0.250764770322725 1 0.333719849586487 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620232 chr1:32620231 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_43378 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 92bp
chr1 32620231 32620231 1 + G C UCEC 32620246 + 32620226 32620266 41 GAAGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGA GAAGACCTATAAGAACAATGCTCTAAACCCTGAAGAAATGA < 41bp 1 0.328140128686102 1 0.137161135673523 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620246 chr1:32620231 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_43379 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 43bp
chr1 32620231 32620231 1 + G C UCEC 32620246 + 32620226 32620266 41 GAAGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGA GAAGACCTATAAGAACAATGCTCTAAACCCTGAAGAAATGA < 41bp 1 0.328140128686102 1 0.137161135673523 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620246 chr1:32620231 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_43379 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 92bp
chr1 32620231 32620231 1 + G C UCEC 32620248 + 32620228 32620268 41 AGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGAGA AGACCTATAAGAACAATGCTCTAAACCCTGAAGAAATGAGA < 41bp 1 0.275096821699593 1 0.279112696647644 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620248 chr1:32620231 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_43380 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 43bp
chr1 32620231 32620231 1 + G C UCEC 32620248 + 32620228 32620268 41 AGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGAGA AGACCTATAAGAACAATGCTCTAAACCCTGAAGAAATGAGA < 41bp 1 0.275096821699593 1 0.279112696647644 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620248 chr1:32620231 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_43380 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 92bp
chr11 120099668 120099668 1 + C A UCEC 120099678 + 120099658 120099698 41 ACGGGAAGCCCTGCGTCTGCCGCTATGGCCTGAGCCTGGCC ACGGGAAGCCATGCGTCTGCCGCTATGGCCTGAGCCTGGCC < 41bp 1 0.706936155338319 1 0.602734923362732 experiment 0.586127689323363 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OAF ENSG00000184232 CDS Human protein_coding chr11:120099678 chr11:120099668 synonymous SNV . 0 11 hm5C_associated_SNPs_43382 0 0 0 0 1 OAF chr11:120099577 3'AG 120099577 Downstream 92bp
chr11 120099668 120099668 1 + C A UCEC 120099680 + 120099660 120099700 41 GGGAAGCCCTGCGTCTGCCGCTATGGCCTGAGCCTGGCCTG GGGAAGCCATGCGTCTGCCGCTATGGCCTGAGCCTGGCCTG < 41bp 1 0.524361132383256 1 0.483053505420685 experiment 0.951277735233488 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OAF ENSG00000184232 CDS Human protein_coding chr11:120099680 chr11:120099668 synonymous SNV . 0 9 hm5C_associated_SNPs_43383 0 0 0 0 1 OAF chr11:120099577 3'AG 120099577 Downstream 92bp
chr11 244732 244732 1 + T G UCEC 244747 + 244727 244767 41 TAAAATTAAACATCGGGGACCTACAGGTTACAAAGGTGAGA TAAAAGTAAACATCGGGGACCTACAGGTTACAAAGGTGAGA < 41bp 1 0.335293684061981 1 0.179504692554474 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMD13 ENSG00000185627 CDS Human protein_coding chr11:244747 chr11:244732 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_43384 0 0 1 1 2 PSMD13 chr11:244675 3'AG 244675 Downstream 58bp
chr11 244732 244732 1 + T G UCEC 244747 + 244727 244767 41 TAAAATTAAACATCGGGGACCTACAGGTTACAAAGGTGAGA TAAAAGTAAACATCGGGGACCTACAGGTTACAAAGGTGAGA < 41bp 1 0.335293684061981 1 0.179504692554474 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMD13 ENSG00000185627 CDS Human protein_coding chr11:244747 chr11:244732 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_43384 0 0 1 1 2 PSMD13 chr11:244761 5'GT 244761 Upstream 30bp
chr7 98601886 98601886 1 + C A UCEC 98601905 + 98601885 98601925 41 TCTTGGAGGCCAAGACCAAGCAACTCCCCAAATTCTTCCTC TATTGGAGGCCAAGACCAAGCAACTCCCCAAATTCTTCCTC < 41bp 1 0.124816340097857 1 0.547884702682495 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98601905 chr7:98601886 synonymous SNV . 0 2 hm5C_associated_SNPs_43386 0 0 1 0 1 TRRAP chr7:98601813 3'AG 98601813 Downstream 74bp
chr20 11900401 11900401 1 + G A UCEC 11900386 + 11900366 11900406 41 TATGTTTTAGCTGTTGGGAGCTCTGTGTTCCATGCGATGTT TATGTTTTAGCTGTTGGGAGCTCTGTGTTCCATGCAATGTT < 41bp 1 0.189215368261748 1 0.162416636943817 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BTBD3 ENSG00000132640 CDS Human protein_coding chr20:11900386 chr20:11900401 synonymous SNV . 0 36 hm5C_associated_SNPs_43387 0 0 1 0 2 BTBD3 chr20:11900366 3'AG 11900366 Downstream 36bp
chr20 11900401 11900401 1 + G A UCEC 11900386 + 11900366 11900406 41 TATGTTTTAGCTGTTGGGAGCTCTGTGTTCCATGCGATGTT TATGTTTTAGCTGTTGGGAGCTCTGTGTTCCATGCAATGTT < 41bp 1 0.189215368261748 1 0.162416636943817 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BTBD3 ENSG00000132640 CDS Human protein_coding chr20:11900386 chr20:11900401 synonymous SNV . 0 36 hm5C_associated_SNPs_43387 0 0 1 0 2 BTBD3 chr20:11900484 5'GT 11900484 Upstream 84bp
chr12 51034576 51034576 1 + C A UCEC 51034590 + 51034570 51034610 41 CTTCTGCTCCCTCTAAGTACCACCGAACTCGATCTGGGGGA CTTCTGATCCCTCTAAGTACCACCGAACTCGATCTGGGGGA < 41bp 1 0.692055172261449 1 0.75525975227356 experiment 0.615889655477103 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51034590 chr12:51034576 nonsynonymous SNV 0.999 0 7 hm5C_associated_SNPs_43388 0 0 1 0 1 DIP2B chr12:51034635 5'GT 51034635 Upstream 60bp
chr15 99460097 99460097 1 + C A UCEC 99460083 + 99460063 99460103 41 AAGTCTTTGAGAATTTCCTGCACAACTCCATCTTCGTGCCC AAGTCTTTGAGAATTTCCTGCACAACTCCATCTTAGTGCCC < 41bp 1 0.194264971276407 1 0.193387925624847 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF1R ENSG00000140443 CDS Human protein_coding chr15:99460083 chr15:99460097 nonsynonymous SNV 0.959 3 35 hm5C_associated_SNPs_43390 0 0 1 0 1 IGF1R chr15:99460105 5'GT 99460105 Upstream 9bp
chr15 99460097 99460097 1 + C A UCEC 99460103 + 99460083 99460123 41 CACAACTCCATCTTCGTGCCCAGGTACCCAGCTCATGTGAA CACAACTCCATCTTAGTGCCCAGGTACCCAGCTCATGTGAA < 41bp 1 0.177924870699106 1 0.271010726690292 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF1R ENSG00000140443 CDS Human protein_coding chr15:99460103 chr15:99460097 nonsynonymous SNV 0.959 3 15 hm5C_associated_SNPs_43391 0 0 1 0 1 IGF1R chr15:99460105 5'GT 99460105 Upstream 9bp
chr5 92921100 92921100 1 + C T UCEC 92921110 + 92921090 92921130 41 ACATGCCGTGCCAACAGGAACTGTCCCATCGACCAGCACCA ACATGCCGTGTCAACAGGAACTGTCCCATCGACCAGCACCA < 41bp 1 0.0894009286577803 1 0.0687248706817627 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NR2F1 ENSG00000175745 CDS Human protein_coding chr5:92921110 chr5:92921100 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_43392 0 0 1 0 1 NR2F1 chr5:92921192 5'GT 92921192 Upstream 93bp
chr2 32824930 32824930 1 + G T UCEC 32824918 + 32824898 32824938 41 TCTTGTGAATCTAGAGACAACTGGTGGTCATAGCGTGCGAT TCTTGTGAATCTAGAGACAACTGGTGGTCATATCGTGCGAT < 41bp 1 0.243708295415335 1 0.516102910041809 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32824918 chr2:32824930 nonsynonymous SNV 0.997 4 33 hm5C_associated_SNPs_43393 0 0 1 0 1 BIRC6 chr2:32824967 5'GT 32824967 Upstream 38bp
chr2 32824930 32824930 1 + G T UCEC 32824931 + 32824911 32824951 41 GAGACAACTGGTGGTCATAGCGTGCGATTCAATCCAAACCT GAGACAACTGGTGGTCATATCGTGCGATTCAATCCAAACCT < 41bp 1 0.151593276905594 1 0.634854853153229 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32824931 chr2:32824930 nonsynonymous SNV 0.997 4 20 hm5C_associated_SNPs_43394 0 0 1 0 1 BIRC6 chr2:32824967 5'GT 32824967 Upstream 38bp
chr16 57153147 57153147 1 + A G UCEC 57153128 + 57153108 57153148 41 ACCTCTTTGGGAAGTCAGACCCCTTTCTGGAGTTTTATAAG ACCTCTTTGGGAAGTCAGACCCCTTTCTGGAGTTTTATAGG < 41bp 1 0.0551100824294843 1 0.0546999275684357 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57153128 chr16:57153147 nonsynonymous SNV 0.994 3 40 hm5C_associated_SNPs_43395 0 0 1 0 2 CPNE2 chr16:57153107 3'AG 57153107 Downstream 41bp
chr16 57153147 57153147 1 + A G UCEC 57153128 + 57153108 57153148 41 ACCTCTTTGGGAAGTCAGACCCCTTTCTGGAGTTTTATAAG ACCTCTTTGGGAAGTCAGACCCCTTTCTGGAGTTTTATAGG < 41bp 1 0.0551100824294843 1 0.0546999275684357 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57153128 chr16:57153147 nonsynonymous SNV 0.994 3 40 hm5C_associated_SNPs_43395 0 0 1 0 2 CPNE2 chr16:57153190 5'GT 57153190 Upstream 44bp
chr16 82891991 82891991 1 + G A UCEC 82891983 + 82891963 82892003 41 TCAGGTGCTGCTGCTAACATCTGCAGAAGATTTGGACTGCA TCAGGTGCTGCTGCTAACATCTGCAGAAAATTTGGACTGCA < 41bp 1 0.570403696084938 1 0.72450715303421 experiment 0.859192607830124 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:82891983 chr16:82891991 nonsynonymous SNV 0.998 0 29 hm5C_associated_SNPs_43397 0 0 0 0 2 CDH13 chr16:82891967 3'AG 82891967 Downstream 25bp
chr16 82891991 82891991 1 + G A UCEC 82891983 + 82891963 82892003 41 TCAGGTGCTGCTGCTAACATCTGCAGAAGATTTGGACTGCA TCAGGTGCTGCTGCTAACATCTGCAGAAAATTTGGACTGCA < 41bp 1 0.570403696084938 1 0.72450715303421 experiment 0.859192607830124 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:82891983 chr16:82891991 nonsynonymous SNV 0.998 0 29 hm5C_associated_SNPs_43397 0 0 0 0 2 CDH13 chr16:82892078 5'GT 82892078 Upstream 88bp
chr11 107966303 107966303 1 + C T UCEC 107966308 + 107966288 107966328 41 ATTTGGAGGTAACCACGTTTCAGCTCGCTGTATTGTTTGCA ATTTGGAGGTAACCATGTTTCAGCTCGCTGTATTGTTTGCA < 41bp 1 0.50820057484129 1 0.459298640489578 experiment 0.98359885031742 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL5 ENSG00000166266 CDS Human protein_coding chr11:107966308 chr11:107966303 nonsynonymous SNV 0.998 4 16 hm5C_associated_SNPs_43398 0 0 1 0 1 CUL5 chr11:107966257 3'AG 107966257 Downstream 47bp
chr14 77706878 77706878 1 + G A UCEC 77706886 + 77706866 77706906 41 GAGTTCAACGCCGAGCTCAACCGCGTGCCGCTCAAGCGGCT GAGTTCAACGCCAAGCTCAACCGCGTGCCGCTCAAGCGGCT < 41bp 1 0.189018572565088 1 0.17591118812561 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77706886 chr14:77706878 nonsynonymous SNV 0.272 3 13 hm5C_associated_SNPs_43399 0 0 0 0 2 TMEM63C chr14:77706818 3'AG 77706818 Downstream 61bp
chr14 77706878 77706878 1 + G A UCEC 77706886 + 77706866 77706906 41 GAGTTCAACGCCGAGCTCAACCGCGTGCCGCTCAAGCGGCT GAGTTCAACGCCAAGCTCAACCGCGTGCCGCTCAAGCGGCT < 41bp 1 0.189018572565088 1 0.17591118812561 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77706886 chr14:77706878 nonsynonymous SNV 0.272 3 13 hm5C_associated_SNPs_43399 0 0 0 0 2 TMEM63C chr14:77706951 5'GT 77706951 Upstream 74bp
chr3 101520151 101520151 1 + G T UCEC 101520149 + 101520129 101520169 41 GTTTGTTTCCTCCCAGGTGACAGGAATTAGCCGAAATCCCT GTTTGTTTCCTCCCAGGTGACATGAATTAGCCGAAATCCCT < 41bp 1 0.585902691185037 1 0.128760069608688 experiment 0.828194617629925 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NXPE3 ENSG00000144815 CDS Human protein_coding chr3:101520149 chr3:101520151 stopgain 0.414 0 23 hm5C_associated_SNPs_43400 0 0 1 0 1 NXPE3 chr3:101520079 3'AG 101520079 Downstream 73bp
chr3 195398114 195398114 1 + A T UCEC 195398099 + 195398079 195398119 41 AAGGTTTATGGAGCGATACGCCCCCATCGCGAAGGACCTGG AAGGTTTATGGAGCGATACGCCCCCATCGCGAAGGTCCTGG < 41bp 1 0.151014345962163 1 0.0264990925788879 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195398099 chr3:195398114 . . 0 36 hm5C_associated_SNPs_43401 0 0 0 0 1 SDHAP2 chr3:195398171 5'GT 195398171 Upstream 58bp
chr8 107752593 107752593 1 + G T UCEC 107752575 + 107752555 107752595 41 ACTTTGTTTTCTAAAGCTTACCAAGCATCTTCCACCAAGAA ACTTTGTTTTCTAAAGCTTACCAAGCATCTTCCACCAATAA < 41bp 1 0.0689776893574875 1 0.0378376245498657 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OXR1 ENSG00000164830 CDS Human protein_coding chr8:107752575 chr8:107752593 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_43403 0 0 1 0 1 OXR1 chr8:107752571 3'AG 107752571 Downstream 23bp
chr18 60642763 60642763 1 + C T UCEC 60642776 + 60642756 60642796 41 TCTCTGTCGAAATGGAAAGCCGCTGCCTCTGTCCAGATCTT TCTCTGTTGAAATGGAAAGCCGCTGCCTCTGTCCAGATCTT < 41bp 1 0.131078129754162 1 0.375677049160004 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PHLPP1 ENSG00000081913 CDS Human protein_coding chr18:60642776 chr18:60642763 stopgain 0.998 0 8 hm5C_associated_SNPs_43404 0 0 0 0 1 PHLPP1 chr18:60642858 5'GT 60642858 Upstream 96bp
chr12 104335638 104335638 1 + T C UCEC 104335627 + 104335607 104335647 41 AAGGTGGACTCAGATGATCTCCCCTTGAATGTTTCCCGCGA AAGGTGGACTCAGATGATCTCCCCTTGAATGCTTCCCGCGA < 41bp 1 0.313752827692736 1 0.363022804260254 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104335627 chr12:104335638 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_43405 0 0 1 0 2 HSP90B1 chr12:104335610 3'AG 104335610 Downstream 29bp
chr12 104335638 104335638 1 + T C UCEC 104335627 + 104335607 104335647 41 AAGGTGGACTCAGATGATCTCCCCTTGAATGTTTCCCGCGA AAGGTGGACTCAGATGATCTCCCCTTGAATGCTTCCCGCGA < 41bp 1 0.313752827692736 1 0.363022804260254 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104335627 chr12:104335638 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_43405 0 0 1 0 2 HSP90B1 chr12:104335675 5'GT 104335675 Upstream 38bp
chr4 41621302 41621302 1 + G A UCEC 41621300 + 41621280 41621320 41 GGCGGACTTCCCATGGTGAGCCGAAATCAGCAGTGCCTTTT GGCGGACTTCCCATGGTGAGCCAAAATCAGCAGTGCCTTTT < 41bp 1 0.473138092277089 1 0.392906248569489 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41621300 chr4:41621302 synonymous SNV . 0 23 hm5C_associated_SNPs_43406 0 0 0 0 1 LIMCH1 chr4:41621205 3'AG 41621205 Downstream 98bp
chr2 135095981 135095981 1 + A C UCEC 135095983 + 135095963 135096003 41 AGAACCTTGAAAAGAGAAAGCGGAAGAAAGTGAGTTTCTTA AGAACCTTGAAAAGAGAACGCGGAAGAAAGTGAGTTTCTTA < 41bp 1 0.460205626021671 1 0.658387064933777 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135095983 chr2:135095981 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_43407 0 0 0 0 1 MGAT5 chr2:135095991 5'GT 135095991 Upstream 11bp
chr22 32234829 32234829 1 + G A UCEC 32234816 + 32234796 32234836 41 CGCCCCCGCTGAGCAGTAGCCCACTCTATAGCCGAGGTGAG CGCCCCCGCTGAGCAGTAGCCCACTCTATAGCCAAGGTGAG < 41bp 1 0.127601133035335 1 0.0609638094902039 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32234816 chr22:32234829 nonsynonymous SNV 0.999 3 34 hm5C_associated_SNPs_43408 0 0 0 0 1 DEPDC5 chr22:32234831 5'GT 32234831 Upstream 3bp
chr20 45801367 45801367 1 + C A UCEC 45801382 + 45801362 45801402 41 AACTTCTCCGCTGACGGCTTCCACAGTTCGGCCCCAGGAGC AACTTATCCGCTGACGGCTTCCACAGTTCGGCCCCAGGAGC < 41bp 1 0.341977965580052 1 0.229807406663895 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EYA2 ENSG00000064655 CDS Human protein_coding chr20:45801382 chr20:45801367 nonsynonymous SNV 0.890 5 6 hm5C_associated_SNPs_43410 0 0 0 0 1 EYA2 chr20:45801355 3'AG 45801355 Downstream 13bp
chr17 46189967 46189967 1 + G A UCEC 46189985 + 46189965 46190005 41 CCGAGTGCAGAATGAGGGCTCCTGGAACTCTTATGTGGATT CCAAGTGCAGAATGAGGGCTCCTGGAACTCTTATGTGGATT < 41bp 1 0.139737931330738 1 0.290364325046539 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX11 ENSG00000002919 CDS Human protein_coding chr17:46189985 chr17:46189967 nonsynonymous SNV 0.997 3 3 hm5C_associated_SNPs_43411 0 0 1 0 2 SNX11 chr17:46189936 3'AG 46189936 Downstream 32bp
chr17 46189967 46189967 1 + G A UCEC 46189985 + 46189965 46190005 41 CCGAGTGCAGAATGAGGGCTCCTGGAACTCTTATGTGGATT CCAAGTGCAGAATGAGGGCTCCTGGAACTCTTATGTGGATT < 41bp 1 0.139737931330738 1 0.290364325046539 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX11 ENSG00000002919 CDS Human protein_coding chr17:46189985 chr17:46189967 nonsynonymous SNV 0.997 3 3 hm5C_associated_SNPs_43411 0 0 1 0 2 SNX11 chr17:46190022 5'GT 46190022 Upstream 56bp
chr3 39431984 39431984 1 + A G UCEC 39431995 + 39431975 39432015 41 GGCCTTTGGAAAGGGATGTCCCCTGTAAGCTGCCATCTGGG GGCCTTTGGGAAGGGATGTCCCCTGTAAGCTGCCATCTGGG < 41bp 1 0.316680767814767 1 0.236603528261185 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431995 chr3:39431984 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_43414 0 0 1 0 2 SLC25A38 chr3:39431914 3'AG 39431914 Downstream 71bp
chr3 39431984 39431984 1 + A G UCEC 39431995 + 39431975 39432015 41 GGCCTTTGGAAAGGGATGTCCCCTGTAAGCTGCCATCTGGG GGCCTTTGGGAAGGGATGTCCCCTGTAAGCTGCCATCTGGG < 41bp 1 0.316680767814767 1 0.236603528261185 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431995 chr3:39431984 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_43414 0 0 1 0 2 SLC25A38 chr3:39431998 5'GT 39431998 Upstream 15bp
chr2 242430978 242430978 1 + C T UCEC 242430986 + 242430966 242431006 41 GAAGATGATGCTCGGGGTGTCCGCAGCTCCCTGGAGGGGCA GAAGATGATGCTTGGGGTGTCCGCAGCTCCCTGGAGGGGCA < 41bp 1 0.622991475664743 1 0.37952932715416 experiment 0.754017048670514 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FARP2 ENSG00000006607 CDS Human protein_coding chr2:242430986 chr2:242430978 nonsynonymous SNV 0.001 2 13 hm5C_associated_SNPs_43416 0 0 0 0 1 FARP2 chr2:242430931 3'AG 242430931 Downstream 48bp
chr9 137702149 137702149 1 + G T UCEC 137702152 + 137702132 137702172 41 GCAAGGGGGACAAAGGAGAACAGGTAAGTATTGGCACGGGG GCAAGGGGGACAAAGGATAACAGGTAAGTATTGGCACGGGG < 41bp 1 0.536916276667207 1 0.546790838241577 experiment 0.926167446665587 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137702152 chr9:137702149 stopgain 0.960 0 18 hm5C_associated_SNPs_43417 0 0 0 0 2 COL5A1 chr9:137702101 3'AG 137702101 Downstream 49bp
chr9 137702149 137702149 1 + G T UCEC 137702152 + 137702132 137702172 41 GCAAGGGGGACAAAGGAGAACAGGTAAGTATTGGCACGGGG GCAAGGGGGACAAAGGATAACAGGTAAGTATTGGCACGGGG < 41bp 1 0.536916276667207 1 0.546790838241577 experiment 0.926167446665587 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137702152 chr9:137702149 stopgain 0.960 0 18 hm5C_associated_SNPs_43417 0 0 0 0 2 COL5A1 chr9:137702154 5'GT 137702154 Upstream 6bp
chr6 31593365 31593365 1 + T C UCEC 31593346 + 31593326 31593366 41 GGTGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTA GGTGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCCA < 41bp 1 0.221976513151579 1 0.064331442117691 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593346 chr6:31593365 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_43418 0 0 1 1 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 24bp
chr6 31593365 31593365 1 + T C UCEC 31593347 + 31593327 31593367 41 GTGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTAC GTGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCCAC < 41bp 1 0.162167109191247 1 0.0985339879989624 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593347 chr6:31593365 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_43419 0 0 1 1 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 24bp
chr6 31593365 31593365 1 + T C UCEC 31593348 + 31593328 31593368 41 TGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACC TGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCCACC < 41bp 1 0.272825118414368 1 0.0827682912349701 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593348 chr6:31593365 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_43420 0 0 1 1 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 24bp
chr6 31593365 31593365 1 + T C UCEC 31593350 + 31593330 31593370 41 GGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGC GGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCCACCGC < 41bp 1 0.592297399667199 1 0.354897022247314 experiment 0.815405200665601 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593350 chr6:31593365 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_43421 0 0 1 1 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 24bp
chr6 31593365 31593365 1 + T C UCEC 31593351 + 31593331 31593371 41 GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCG GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCCACCGCG < 41bp 1 0.389244006537744 1 0.125841170549393 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593351 chr6:31593365 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_43422 0 0 1 1 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 24bp
chr6 31593365 31593365 1 + T C UCEC 31593352 + 31593332 31593372 41 CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGG CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCCACCGCGG < 41bp 1 0.356399506881867 1 0.149693250656128 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593352 chr6:31593365 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_43423 0 0 1 1 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 24bp
chr6 31593365 31593365 1 + T C UCEC 31593353 + 31593333 31593373 41 TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGGA TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCCACCGCGGA < 41bp 1 0.308111394465683 1 0.435111731290817 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593353 chr6:31593365 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_43424 0 0 1 1 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 24bp
chr15 81214444 81214444 1 + A C UCEC 81214448 + 81214428 81214468 41 CACATTCCACTGGGAAAATTCTATAACAACCGAGCACATTC CACATTCCACTGGGAACATTCTATAACAACCGAGCACATTC < 41bp 1 0.331032344640162 1 0.193852066993713 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81214448 chr15:81214444 nonsynonymous SNV 0.985 0 17 hm5C_associated_SNPs_43425 0 0 0 0 2 CEMIP chr15:81214350 3'AG 81214350 Downstream 95bp
chr15 81214444 81214444 1 + A C UCEC 81214448 + 81214428 81214468 41 CACATTCCACTGGGAAAATTCTATAACAACCGAGCACATTC CACATTCCACTGGGAACATTCTATAACAACCGAGCACATTC < 41bp 1 0.331032344640162 1 0.193852066993713 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81214448 chr15:81214444 nonsynonymous SNV 0.985 0 17 hm5C_associated_SNPs_43425 0 0 0 0 2 CEMIP chr15:81214478 5'GT 81214478 Upstream 35bp
chr17 57725631 57725631 1 + T A UCEC 57725620 + 57725600 57725640 41 GCAAAATCGTGTGGTGGGAGCTATGCAGCTATATTCTGTAG GCAAAATCGTGTGGTGGGAGCTATGCAGCTAAATTCTGTAG < 41bp 1 0.192736770458388 1 0.0679200887680054 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57725620 chr17:57725631 nonsynonymous SNV 0.999 4 32 hm5C_associated_SNPs_43426 0 0 1 0 1 CLTC chr17:57725601 3'AG 57725601 Downstream 31bp
chr1 193205402 193205402 1 + G A UCEC 193205390 + 193205370 193205410 41 ACTTTTCTACTTGTAGGGACCGCGTTGTAGCCGTTTTTGTG ACTTTTCTACTTGTAGGGACCGCGTTGTAGCCATTTTTGTG < 41bp 1 0.677150237417394 1 0.144496351480484 experiment 0.645699525165212 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC73 ENSG00000134371 CDS Human protein_coding chr1:193205390 chr1:193205402 nonsynonymous SNV 0.967 3 33 hm5C_associated_SNPs_43427 1 0 1 0 2 CDC73 chr1:193205386 3'AG 193205386 Downstream 17bp
chr1 193205402 193205402 1 + G A UCEC 193205390 + 193205370 193205410 41 ACTTTTCTACTTGTAGGGACCGCGTTGTAGCCGTTTTTGTG ACTTTTCTACTTGTAGGGACCGCGTTGTAGCCATTTTTGTG < 41bp 1 0.677150237417394 1 0.144496351480484 experiment 0.645699525165212 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC73 ENSG00000134371 CDS Human protein_coding chr1:193205390 chr1:193205402 nonsynonymous SNV 0.967 3 33 hm5C_associated_SNPs_43427 1 0 1 0 2 CDC73 chr1:193205486 5'GT 193205486 Upstream 85bp
chr12 57910042 57910042 1 + G A UCEC 57910022 + 57910002 57910042 41 CTGGTGATAACTTTGTTGTTCTCCAGGCAAAAACGTCCCCG CTGGTGATAACTTTGTTGTTCTCCAGGCAAAAACGTCCCCA < 41bp 1 0.426891761479291 1 0.801587820053101 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MARS ENSG00000166986 CDS Human protein_coding chr12:57910022 chr12:57910042 synonymous SNV . 0 41 hm5C_associated_SNPs_43429 0 0 1 0 2 MARS chr12:57910028 3'AG 57910028 Downstream 15bp
chr12 57910042 57910042 1 + G A UCEC 57910022 + 57910002 57910042 41 CTGGTGATAACTTTGTTGTTCTCCAGGCAAAAACGTCCCCG CTGGTGATAACTTTGTTGTTCTCCAGGCAAAAACGTCCCCA < 41bp 1 0.426891761479291 1 0.801587820053101 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MARS ENSG00000166986 CDS Human protein_coding chr12:57910022 chr12:57910042 synonymous SNV . 0 41 hm5C_associated_SNPs_43429 0 0 1 0 2 MARS chr12:57910120 5'GT 57910120 Upstream 79bp
chr21 17250136 17250136 1 + G T UCEC 17250131 + 17250111 17250151 41 TAAGAAATTAAATGAGCAAGCCGCAGAACTCTTCGAATCTG TAAGAAATTAAATGAGCAAGCCGCATAACTCTTCGAATCTG < 41bp 1 0.480914094501665 1 0.29080206155777 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP25 ENSG00000155313 CDS Human protein_coding chr21:17250131 chr21:17250136 stopgain 0.937 1 26 hm5C_associated_SNPs_43430 0 0 1 0 1 USP25 chr21:17250115 3'AG 17250115 Downstream 22bp
chr12 82796816 82796816 1 + C T UCEC 82796830 + 82796810 82796850 41 ACTTTGCGAATATTTACCTCCAACTCTGAAATCAAGGGAGT ACTTTGTGAATATTTACCTCCAACTCTGAAATCAAGGGAGT < 41bp 1 0.222548502215531 1 0.104862928390503 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL25 ENSG00000127720 CDS Human protein_coding chr12:82796830 chr12:82796816 stopgain 0.958 1 7 hm5C_associated_SNPs_43432 0 0 0 0 2 METTL25 chr12:82796762 3'AG 82796762 Downstream 55bp
chr12 82796816 82796816 1 + C T UCEC 82796830 + 82796810 82796850 41 ACTTTGCGAATATTTACCTCCAACTCTGAAATCAAGGGAGT ACTTTGTGAATATTTACCTCCAACTCTGAAATCAAGGGAGT < 41bp 1 0.222548502215531 1 0.104862928390503 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL25 ENSG00000127720 CDS Human protein_coding chr12:82796830 chr12:82796816 stopgain 0.958 1 7 hm5C_associated_SNPs_43432 0 0 0 0 2 METTL25 chr12:82796909 5'GT 82796909 Upstream 94bp
chrX 24755785 24755785 1 + G T UCEC 24755775 + 24755755 24755795 41 ATGGGTTTGAACTGGAAGTACTACTGCAGAGAATTAATGTG ATGGGTTTGAACTGGAAGTACTACTGCAGATAATTAATGTG < 41bp 1 0.15503892297646 1 0.0880051255226135 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLA1 ENSG00000101868 CDS Human protein_coding chrX:24755775 chrX:24755785 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_43433 0 0 1 0 1 POLA1 chrX:24755858 5'GT 24755858 Upstream 74bp
chr1 45270018 45270018 1 + G T UCEC 45270016 + 45269996 45270036 41 CCTCTCCCATGACAGCGGAACAGAACCCGGCCCCCCTGGCC CCTCTCCCATGACAGCGGAACATAACCCGGCCCCCCTGGCC < 41bp 1 0.266124910567363 1 0.0915399789810181 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45270016 chr1:45270018 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_43435 0 0 1 0 1 PLK3 chr1:45270011 3'AG 45270011 Downstream 8bp
chr2 216960888 216960888 1 + G T UCEC 216960884 + 216960864 216960904 41 GAGAAAACAGATGAGGAGCCCGGAGAATCAGAAGGTGGAGA GAGAAAACAGATGAGGAGCCCGGATAATCAGAAGGTGGAGA < 41bp 1 0.364744931062176 1 0.348173409700394 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM169 ENSG00000163449 CDS Human protein_coding chr2:216960884 chr2:216960888 stopgain 0.051 0 25 hm5C_associated_SNPs_43436 0 0 0 0 1 TMEM169 chr2:216960957 5'GT 216960957 Upstream 70bp
chr1 44684034 44684034 1 + G A UCEC 44684019 + 44683999 44684039 41 TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGATGAT TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACAATGAT < 41bp 1 0.536179666652938 1 0.355637282133102 experiment 0.927640666694123 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44684019 chr1:44684034 nonsynonymous SNV 0.948 1 36 hm5C_associated_SNPs_43437 0 0 1 0 2 DMAP1 chr1:44683983 3'AG 44683983 Downstream 52bp
chr1 44684034 44684034 1 + G A UCEC 44684019 + 44683999 44684039 41 TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGATGAT TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACAATGAT < 41bp 1 0.536179666652938 1 0.355637282133102 experiment 0.927640666694123 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44684019 chr1:44684034 nonsynonymous SNV 0.948 1 36 hm5C_associated_SNPs_43437 0 0 1 0 2 DMAP1 chr1:44684013 3'AG 44684013 Downstream 22bp
chr3 32188122 32188122 1 + G T UCEC 32188133 + 32188113 32188153 41 GGCAGCAAAGTAATGGAGAACGGCCTTCTCTTCAAAGAACT GGCAGCAAATTAATGGAGAACGGCCTTCTCTTCAAAGAACT < 41bp 1 0.258488698396939 1 0.441197991371155 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GPD1L ENSG00000152642 CDS Human protein_coding chr3:32188133 chr3:32188122 nonsynonymous SNV 0.969 0 10 hm5C_associated_SNPs_43439 0 0 1 0 1 GPD1L chr3:32188114 3'AG 32188114 Downstream 9bp
chr13 111160550 111160550 1 + C T UCEC 111160562 + 111160542 111160582 41 TTGTGGATCGGATATTCCTTCCTCATGGTATGTGGTATTTG TTGTGGATTGGATATTCCTTCCTCATGGTATGTGGTATTTG < 41bp 1 0.0890696379990003 1 0.0538565814495087 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111160562 chr13:111160550 synonymous SNV . 0 9 hm5C_associated_SNPs_43441 0 0 0 0 1 COL4A2 chr13:111160568 5'GT 111160568 Upstream 19bp
chr10 93713510 93713510 1 + A C UCEC 93713504 + 93713484 93713524 41 ATTCTTTTAGACTCTTCAGGCAGCTGAATTGATTGACTCAG ATTCTTTTAGACTCTTCAGGCAGCTGCATTGATTGACTCAG < 41bp 1 0.311959756668399 1 0.54978221654892 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93713504 chr10:93713510 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_43442 0 0 1 1 1 BTAF1 chr10:93713494 3'AG 93713494 Downstream 17bp
chrX 47774361 47774361 1 + T C UCEC 47774348 + 47774328 47774368 41 AAATTTGGAATTAAGCCTTCCCAGAGGAGAATTTCTGGGAA AAATTTGGAATTAAGCCTTCCCAGAGGAGAATTCCTGGGAA < 41bp 1 0.260690523988697 1 0.597433686256409 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF81 ENSG00000197779 CDS Human protein_coding chrX:47774348 chrX:47774361 nonsynonymous SNV 0.762 0 34 hm5C_associated_SNPs_43443 0 0 0 0 1 ZNF81 chrX:47774323 3'AG 47774323 Downstream 39bp
chr12 50452864 50452864 1 + G T UCEC 50452871 + 50452851 50452891 41 GCCAAGTCTCCAAGAATGACCTGTATCATGCTGGGGAGCTG GCCAAGTCTCCAATAATGACCTGTATCATGCTGGGGAGCTG < 41bp 1 0.515062711689868 1 0.0850111842155457 experiment 0.969874576620263 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50452871 chr12:50452864 nonsynonymous SNV 1.000 0 14 hm5C_associated_SNPs_43444 0 0 0 0 1 ASIC1 chr12:50452911 5'GT 50452911 Upstream 48bp
chr7 44741208 44741208 1 + C T UCEC 44741191 + 44741171 44741211 41 GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGTTTC < 41bp 1 0.184657163958509 1 0.630326449871063 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44741191 chr7:44741208 nonsynonymous SNV 0.990 1 38 hm5C_associated_SNPs_43445 0 0 1 0 2 OGDH chr7:44741142 3'AG 44741142 Downstream 67bp
chr7 44741208 44741208 1 + C T UCEC 44741191 + 44741171 44741211 41 GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGTTTC < 41bp 1 0.184657163958509 1 0.630326449871063 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44741191 chr7:44741208 nonsynonymous SNV 0.990 1 38 hm5C_associated_SNPs_43445 0 0 1 0 2 OGDH chr7:44741214 5'GT 44741214 Upstream 7bp
chr7 116422057 116422057 1 + G T UCEC 116422045 + 116422025 116422065 41 ACTCTCTTTGACTGCAGAATCCAACTGTAAAAGATCTTATT ACTCTCTTTGACTGCAGAATCCAACTGTAAAATATCTTATT < 41bp 1 0.119440432429808 1 0.394179463386536 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MET ENSG00000105976 CDS Human protein_coding chr7:116422045 chr7:116422057 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_43446 0 0 1 0 2 MET chr7:116422042 3'AG 116422042 Downstream 16bp
chr7 116422057 116422057 1 + G T UCEC 116422045 + 116422025 116422065 41 ACTCTCTTTGACTGCAGAATCCAACTGTAAAAGATCTTATT ACTCTCTTTGACTGCAGAATCCAACTGTAAAATATCTTATT < 41bp 1 0.119440432429808 1 0.394179463386536 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MET ENSG00000105976 CDS Human protein_coding chr7:116422045 chr7:116422057 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_43446 0 0 1 0 2 MET chr7:116422151 5'GT 116422151 Upstream 95bp
chr22 18979453 18979453 1 + G T UCEC 18979435 + 18979415 18979455 41 AGGCCCGTCCTGGTGGAGTTCACCCTGCTGGAGATGGAGAA AGGCCCGTCCTGGTGGAGTTCACCCTGCTGGAGATGGATAA < 41bp 1 0.277095809733693 1 0.175233155488968 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979435 chr22:18979453 . . 0 39 hm5C_associated_SNPs_43447 0 0 0 0 1 DGCR5 chr22:18979530 5'GT 18979530 Upstream 78bp
chr22 18979453 18979453 1 + G T UCEC 18979466 + 18979446 18979486 41 AGATGGAGAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAAC AGATGGATAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAAC < 41bp 1 0.103882057391502 1 0.0436413884162903 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979466 chr22:18979453 . . 0 8 hm5C_associated_SNPs_43448 0 0 0 0 1 DGCR5 chr22:18979530 5'GT 18979530 Upstream 78bp
chr2 233684608 233684608 1 + G A UCEC 233684606 + 233684586 233684626 41 AGCGAGAAGAGGAAGAAAGACAGCAGCAAGAAGAAGCTCTT AGCGAGAAGAGGAAGAAAGACAACAGCAAGAAGAAGCTCTT < 41bp 1 0.730100915457213 1 0.773009657859802 experiment 0.539798169085574 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233684606 chr2:233684608 synonymous SNV . 0 23 hm5C_associated_SNPs_43449 0 0 1 0 1 GIGYF2 chr2:233684537 3'AG 233684537 Downstream 72bp
chr2 233684608 233684608 1 + G A UCEC 233684612 + 233684592 233684632 41 AAGAGGAAGAAAGACAGCAGCAAGAAGAAGCTCTTAGAAGA AAGAGGAAGAAAGACAACAGCAAGAAGAAGCTCTTAGAAGA < 41bp 1 0.685237559547541 1 0.616708099842072 experiment 0.629524880904917 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233684612 chr2:233684608 synonymous SNV . 0 17 hm5C_associated_SNPs_43450 0 0 1 0 1 GIGYF2 chr2:233684537 3'AG 233684537 Downstream 72bp
chr2 233684608 233684608 1 + G A UCEC 233684622 + 233684602 233684642 41 AAGACAGCAGCAAGAAGAAGCTCTTAGAAGACTGGAAGAGA AAGACAACAGCAAGAAGAAGCTCTTAGAAGACTGGAAGAGA < 41bp 1 0.123802873006713 1 0.256164371967316 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233684622 chr2:233684608 synonymous SNV . 0 7 hm5C_associated_SNPs_43451 0 0 1 0 1 GIGYF2 chr2:233684537 3'AG 233684537 Downstream 72bp
chr6 36442601 36442601 1 + C A UCEC 36442596 + 36442576 36442616 41 TGACTATGCCTCTCAGCCAGCAAATCTTCAGTTCCCTCACA TGACTATGCCTCTCAGCCAGCAAATATTCAGTTCCCTCACA < 41bp 1 0.19448689921246 1 0.230979084968567 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KCTD20 ENSG00000112078 CDS Human protein_coding chr6:36442596 chr6:36442601 nonsynonymous SNV 0.983 0 26 hm5C_associated_SNPs_43452 0 0 1 0 1 KCTD20 chr6:36442566 3'AG 36442566 Downstream 36bp
chr1 162745466 162745466 1 + G T UCEC 162745469 + 162745449 162745489 41 TTTCTTAAGGAGATAAAGATCATGTCTCGGCTCAAGGACCC TTTCTTAAGGAGATAAATATCATGTCTCGGCTCAAGGACCC < 41bp 1 0.37651646319865 1 0.130233079195023 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162745469 chr1:162745466 nonsynonymous SNV 1.000 5 18 hm5C_associated_SNPs_43453 0 0 0 0 1 DDR2 chr1:162745442 3'AG 162745442 Downstream 25bp
chr4 144438535 144438535 1 + A C UCEC 144438549 + 144438529 144438569 41 CCTGGAAAGCAAAAGGAAATCCAAGAACCAGATCCTACCTA CCTGGACAGCAAAAGGAAATCCAAGAACCAGATCCTACCTA < 41bp 1 0.385787882207125 1 0.492017060518265 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA5 ENSG00000153147 CDS Human protein_coding chr4:144438549 chr4:144438535 nonsynonymous SNV 0.998 2 7 hm5C_associated_SNPs_43454 0 0 1 0 2 SMARCA5 chr4:144438508 3'AG 144438508 Downstream 28bp
chr4 144438535 144438535 1 + A C UCEC 144438549 + 144438529 144438569 41 CCTGGAAAGCAAAAGGAAATCCAAGAACCAGATCCTACCTA CCTGGACAGCAAAAGGAAATCCAAGAACCAGATCCTACCTA < 41bp 1 0.385787882207125 1 0.492017060518265 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA5 ENSG00000153147 CDS Human protein_coding chr4:144438549 chr4:144438535 nonsynonymous SNV 0.998 2 7 hm5C_associated_SNPs_43454 0 0 1 0 2 SMARCA5 chr4:144438582 5'GT 144438582 Upstream 48bp
chr3 112713993 112713993 1 + G T UCEC 112714008 + 112713988 112714028 41 ACAAAGAAAATGAATTTTTTCAAAGTTGGAAAACATTTTAC ACAAATAAAATGAATTTTTTCAAAGTTGGAAAACATTTTAC < 41bp 1 0.558361880620527 1 0.761259913444519 experiment 0.883276238758946 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTPBP8 ENSG00000163607 CDS Human protein_coding chr3:112714008 chr3:112713993 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_43455 0 0 1 0 1 GTPBP8 chr3:112713982 3'AG 112713982 Downstream 12bp
chr5 61778972 61778972 1 + A G UCEC 61778983 + 61778963 61779003 41 TACTCCTCTAATTCAGAGATCACTGGAATTTTCTGTAAGCT TACTCCTCTGATTCAGAGATCACTGGAATTTTCTGTAAGCT < 41bp 1 0.152956426970439 1 0.132145136594772 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IPO11 ENSG00000086200 CDS Human protein_coding chr5:61778983 chr5:61778972 synonymous SNV . 0 10 hm5C_associated_SNPs_43456 0 0 1 0 1 IPO11 chr5:61778928 3'AG 61778928 Downstream 45bp
chr1 236347187 236347187 1 + G T UCEC 236347193 + 236347173 236347213 41 TTTCTTCCGAGTTAGAAATCCTACAAAGGACCTTGTAAGTA TTTCTTCCGAGTTATAAATCCTACAAAGGACCTTGTAAGTA < 41bp 1 0.616696752792456 1 0.232986807823181 experiment 0.766606494415089 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPR137B ENSG00000077585 CDS Human protein_coding chr1:236347193 chr1:236347187 nonsynonymous SNV 0.847 4 15 hm5C_associated_SNPs_43457 0 0 1 1 1 GPR137B chr1:236347206 5'GT 236347206 Upstream 20bp
chr3 179424772 179424772 1 + G T UCEC 179424778 + 179424758 179424798 41 TCTCCATACAGAAAGCAGGACCCAGACACGTGGGAAAATGA TCTCCATACAGAAATCAGGACCCAGACACGTGGGAAAATGA < 41bp 1 0.048759590040347 1 0.0817404985427856 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USP13 ENSG00000058056 CDS Human protein_coding chr3:179424778 chr3:179424772 nonsynonymous SNV 0.995 2 15 hm5C_associated_SNPs_43458 0 0 1 0 2 USP13 chr3:179424722 3'AG 179424722 Downstream 51bp
chr3 179424772 179424772 1 + G T UCEC 179424778 + 179424758 179424798 41 TCTCCATACAGAAAGCAGGACCCAGACACGTGGGAAAATGA TCTCCATACAGAAATCAGGACCCAGACACGTGGGAAAATGA < 41bp 1 0.048759590040347 1 0.0817404985427856 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USP13 ENSG00000058056 CDS Human protein_coding chr3:179424778 chr3:179424772 nonsynonymous SNV 0.995 2 15 hm5C_associated_SNPs_43458 0 0 1 0 2 USP13 chr3:179424864 5'GT 179424864 Upstream 93bp
chr19 18245425 18245425 1 + G A UCEC 18245431 + 18245411 18245451 41 CACATCAAGCTCACGGACTTCGGCCTGTCCAAGATCGGCCT CACATCAAGCTCACAGACTTCGGCCTGTCCAAGATCGGCCT < 41bp 1 0.325047080313105 1 0.24273407459259 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18245431 chr19:18245425 synonymous SNV . 0 15 hm5C_associated_SNPs_43460 0 0 0 0 2 MAST3 chr19:18245389 3'AG 18245389 Downstream 37bp
chr19 18245425 18245425 1 + G A UCEC 18245431 + 18245411 18245451 41 CACATCAAGCTCACGGACTTCGGCCTGTCCAAGATCGGCCT CACATCAAGCTCACAGACTTCGGCCTGTCCAAGATCGGCCT < 41bp 1 0.325047080313105 1 0.24273407459259 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18245431 chr19:18245425 synonymous SNV . 0 15 hm5C_associated_SNPs_43460 0 0 0 0 2 MAST3 chr19:18245521 5'GT 18245521 Upstream 97bp
chr17 30293190 30293190 1 + G A UCEC 30293195 + 30293175 30293215 41 TCATTTGCAGCTTACGTTTACTGGTTTCTTCCACAAAAATG TCATTTGCAGCTTACATTTACTGGTTTCTTCCACAAAAATG < 41bp 1 0.506117204126173 1 0.159992009401321 experiment 0.987765591747654 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SUZ12 ENSG00000178691 CDS Human protein_coding chr17:30293195 chr17:30293190 synonymous SNV . 0 16 hm5C_associated_SNPs_43461 0 0 1 0 2 SUZ12 chr17:30293166 3'AG 30293166 Downstream 25bp
chr17 30293190 30293190 1 + G A UCEC 30293195 + 30293175 30293215 41 TCATTTGCAGCTTACGTTTACTGGTTTCTTCCACAAAAATG TCATTTGCAGCTTACATTTACTGGTTTCTTCCACAAAAATG < 41bp 1 0.506117204126173 1 0.159992009401321 experiment 0.987765591747654 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SUZ12 ENSG00000178691 CDS Human protein_coding chr17:30293195 chr17:30293190 synonymous SNV . 0 16 hm5C_associated_SNPs_43461 0 0 1 0 2 SUZ12 chr17:30293215 5'GT 30293215 Upstream 26bp
chr5 137734038 137734038 1 + C T UCEC 137734024 + 137734004 137734044 41 TCCTGGCCAATGTTGGGGACCAGTTCTGCCAGCTCGTAATG TCCTGGCCAATGTTGGGGACCAGTTCTGCCAGCTTGTAATG < 41bp 1 0.145528672689493 1 0.0355956256389618 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KDM3B ENSG00000120733 CDS Human protein_coding chr5:137734024 chr5:137734038 synonymous SNV . 0 35 hm5C_associated_SNPs_43462 0 0 1 0 1 KDM3B chr5:137734081 5'GT 137734081 Upstream 44bp
chr16 30995246 30995246 1 + G A UCEC 30995266 + 30995246 30995286 41 GTGGACGAGGAGATCACCTACGACTACAAGTTCCCACTGGA ATGGACGAGGAGATCACCTACGACTACAAGTTCCCACTGGA < 41bp 1 0.196352729992452 1 0.392379075288773 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30995266 chr16:30995246 nonsynonymous SNV 0.992 3 1 hm5C_associated_SNPs_43463 0 0 1 0 1 SETD1A chr16:30995171 3'AG 30995171 Downstream 76bp
chr19 11096047 11096047 1 + G C UCEC 11096032 + 11096012 11096052 41 ATGGGGATGCGGTCAGGGGGCCATGCTGGGATGGGGCCCCC ATGGGGATGCGGTCAGGGGGCCATGCTGGGATGGGCCCCCC < 41bp 1 0.305293480083015 1 0.447842568159103 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11096032 chr19:11096047 synonymous SNV . 0 36 hm5C_associated_SNPs_43467 0 0 1 0 2 SMARCA4 chr19:11095949 3'AG 11095949 Downstream 99bp
chr19 11096047 11096047 1 + G C UCEC 11096032 + 11096012 11096052 41 ATGGGGATGCGGTCAGGGGGCCATGCTGGGATGGGGCCCCC ATGGGGATGCGGTCAGGGGGCCATGCTGGGATGGGCCCCCC < 41bp 1 0.305293480083015 1 0.447842568159103 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11096032 chr19:11096047 synonymous SNV . 0 36 hm5C_associated_SNPs_43467 0 0 1 0 2 SMARCA4 chr19:11096081 5'GT 11096081 Upstream 35bp
chr7 150765087 150765087 1 + G A UCEC 150765104 + 150765084 150765124 41 CACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCG CACATGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCG < 41bp 1 0.569239630347865 1 0.341610968112946 experiment 0.86152073930427 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765104 chr7:150765087 nonsynonymous SNV 0.834 3 4 hm5C_associated_SNPs_43470 0 0 1 0 1 SLC4A2 chr7:150765141 5'GT 150765141 Upstream 55bp
chr7 150765087 150765087 1 + G A UCEC 150765105 + 150765085 150765125 41 ACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCGC ACATGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCGC < 41bp 1 0.528736749642333 1 0.646806120872498 experiment 0.942526500715334 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765105 chr7:150765087 nonsynonymous SNV 0.834 3 3 hm5C_associated_SNPs_43471 0 0 1 0 1 SLC4A2 chr7:150765141 5'GT 150765141 Upstream 55bp
chr19 39950551 39950551 1 + C T UCEC 39950544 + 39950524 39950564 41 TCTTCCAGATTGGGGAGGAACGGGCCACGGCCATTTCCTTG TCTTCCAGATTGGGGAGGAACGGGCCATGGCCATTTCCTTG < 41bp 1 0.762412552706571 1 0.624528527259827 experiment 0.475174894586857 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950544 chr19:39950551 nonsynonymous SNV 0.902 4 28 hm5C_associated_SNPs_43472 0 0 1 0 2 SUPT5H chr19:39950532 3'AG 39950532 Downstream 20bp
chr19 39950551 39950551 1 + C T UCEC 39950544 + 39950524 39950564 41 TCTTCCAGATTGGGGAGGAACGGGCCACGGCCATTTCCTTG TCTTCCAGATTGGGGAGGAACGGGCCATGGCCATTTCCTTG < 41bp 1 0.762412552706571 1 0.624528527259827 experiment 0.475174894586857 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950544 chr19:39950551 nonsynonymous SNV 0.902 4 28 hm5C_associated_SNPs_43472 0 0 1 0 2 SUPT5H chr19:39950600 5'GT 39950600 Upstream 50bp
chr19 36216171 36216171 1 + C T UCEC 36216159 + 36216139 36216179 41 AACGTGTGGCTGATGGGGGGCCTGAGTGTGCTCACCTCTGT AACGTGTGGCTGATGGGGGGCCTGAGTGTGCTTACCTCTGT < 41bp 1 0.138730095468439 1 0.114303767681122 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216159 chr19:36216171 synonymous SNV . 0 33 hm5C_associated_SNPs_43473 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 51bp
chr19 36216171 36216171 1 + C T UCEC 36216159 + 36216139 36216179 41 AACGTGTGGCTGATGGGGGGCCTGAGTGTGCTCACCTCTGT AACGTGTGGCTGATGGGGGGCCTGAGTGTGCTTACCTCTGT < 41bp 1 0.138730095468439 1 0.114303767681122 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216159 chr19:36216171 synonymous SNV . 0 33 hm5C_associated_SNPs_43473 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 64bp
chr19 36216171 36216171 1 + C T UCEC 36216160 + 36216140 36216180 41 ACGTGTGGCTGATGGGGGGCCTGAGTGTGCTCACCTCTGTG ACGTGTGGCTGATGGGGGGCCTGAGTGTGCTTACCTCTGTG < 41bp 1 0.323519946547047 1 0.199014574289322 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216160 chr19:36216171 synonymous SNV . 0 32 hm5C_associated_SNPs_43474 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 51bp
chr19 36216171 36216171 1 + C T UCEC 36216160 + 36216140 36216180 41 ACGTGTGGCTGATGGGGGGCCTGAGTGTGCTCACCTCTGTG ACGTGTGGCTGATGGGGGGCCTGAGTGTGCTTACCTCTGTG < 41bp 1 0.323519946547047 1 0.199014574289322 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216160 chr19:36216171 synonymous SNV . 0 32 hm5C_associated_SNPs_43474 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 64bp
chr19 36216171 36216171 1 + C T UCEC 36216189 + 36216169 36216209 41 CTCACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCT CTTACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCT < 41bp 1 0.0165121796073908 1 0.0886060893535614 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216189 chr19:36216171 synonymous SNV . 0 3 hm5C_associated_SNPs_43475 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 51bp
chr19 36216171 36216171 1 + C T UCEC 36216189 + 36216169 36216209 41 CTCACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCT CTTACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCT < 41bp 1 0.0165121796073908 1 0.0886060893535614 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216189 chr19:36216171 synonymous SNV . 0 3 hm5C_associated_SNPs_43475 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 64bp
chr19 36216171 36216171 1 + C T UCEC 36216190 + 36216170 36216210 41 TCACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTG TTACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTG < 41bp 1 0.043386661082036 1 0.14202806353569 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216190 chr19:36216171 synonymous SNV . 0 2 hm5C_associated_SNPs_43476 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 51bp
chr19 36216171 36216171 1 + C T UCEC 36216190 + 36216170 36216210 41 TCACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTG TTACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTG < 41bp 1 0.043386661082036 1 0.14202806353569 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216190 chr19:36216171 synonymous SNV . 0 2 hm5C_associated_SNPs_43476 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 64bp
chr19 36216171 36216171 1 + C T UCEC 36216191 + 36216171 36216211 41 CACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGT TACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGT < 41bp 1 0.0999940781893133 1 0.231186151504517 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216191 chr19:36216171 synonymous SNV . 0 1 hm5C_associated_SNPs_43477 0 0 1 0 2 KMT2B chr19:36216121 3'AG 36216121 Downstream 51bp
chr19 36216171 36216171 1 + C T UCEC 36216191 + 36216171 36216211 41 CACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGT TACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGT < 41bp 1 0.0999940781893133 1 0.231186151504517 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216191 chr19:36216171 synonymous SNV . 0 1 hm5C_associated_SNPs_43477 0 0 1 0 2 KMT2B chr19:36216234 5'GT 36216234 Upstream 64bp
chr17 29560163 29560163 1 + A G UCEC 29560175 + 29560155 29560195 41 TGGTCACAATGATGGGTGATCAAGGAGAACTCCCTATAGCG TGGTCACAGTGATGGGTGATCAAGGAGAACTCCCTATAGCG < 41bp 1 0.548254265308645 1 0.869936347007751 experiment 0.903491469382709 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29560175 chr17:29560163 nonsynonymous SNV 0.997 3 9 hm5C_associated_SNPs_43478 0 0 1 0 1 NF1 chr17:29560231 5'GT 29560231 Upstream 69bp
chr12 109684161 109684161 1 + G A UCEC 109684168 + 109684148 109684188 41 TCCCAAAATTTACGTGGCAGCCAACAGTGGCGCCCGTATTG TCCCAAAATTTACATGGCAGCCAACAGTGGCGCCCGTATTG < 41bp 1 0.0278769077744773 1 0.190533757209778 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109684168 chr12:109684161 nonsynonymous SNV 0.996 3 14 hm5C_associated_SNPs_43479 0 0 1 0 1 ACACB chr12:109684253 5'GT 109684253 Upstream 93bp
chr11 61913176 61913176 1 + C T UCEC 61913174 + 61913154 61913194 41 GAAGATGGAGGAGGTGGAAGCACGCAGGAAGCAGGAAGAGG GAAGATGGAGGAGGTGGAAGCATGCAGGAAGCAGGAAGAGG < 41bp 1 0.213380652473127 1 0.281797826290131 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61913174 chr11:61913176 nonsynonymous SNV 0.886 4 23 hm5C_associated_SNPs_43481 0 0 1 0 3 INCENP chr11:61913101 3'AG 61913101 Downstream 76bp
chr11 61913176 61913176 1 + C T UCEC 61913174 + 61913154 61913194 41 GAAGATGGAGGAGGTGGAAGCACGCAGGAAGCAGGAAGAGG GAAGATGGAGGAGGTGGAAGCATGCAGGAAGCAGGAAGAGG < 41bp 1 0.213380652473127 1 0.281797826290131 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61913174 chr11:61913176 nonsynonymous SNV 0.886 4 23 hm5C_associated_SNPs_43481 0 0 1 0 3 INCENP chr11:61913223 5'GT 61913223 Upstream 48bp
chr11 61913176 61913176 1 + C T UCEC 61913174 + 61913154 61913194 41 GAAGATGGAGGAGGTGGAAGCACGCAGGAAGCAGGAAGAGG GAAGATGGAGGAGGTGGAAGCATGCAGGAAGCAGGAAGAGG < 41bp 1 0.213380652473127 1 0.281797826290131 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61913174 chr11:61913176 nonsynonymous SNV 0.886 4 23 hm5C_associated_SNPs_43481 0 0 1 0 3 INCENP chr11:61913235 5'GT 61913235 Upstream 60bp
chr5 43650633 43650633 1 + C T UCEC 43650617 + 43650597 43650637 41 GGTTGGCACTGATGGGAGGACATTTGTATCCTTCCACAACT GGTTGGCACTGATGGGAGGACATTTGTATCCTTCCATAACT < 41bp 1 0.150757218928867 1 0.0311766564846039 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43650617 chr5:43650633 nonsynonymous SNV 0.986 1 37 hm5C_associated_SNPs_43482 0 0 1 0 2 NNT chr5:43650579 3'AG 43650579 Downstream 55bp
chr5 43650633 43650633 1 + C T UCEC 43650617 + 43650597 43650637 41 GGTTGGCACTGATGGGAGGACATTTGTATCCTTCCACAACT GGTTGGCACTGATGGGAGGACATTTGTATCCTTCCATAACT < 41bp 1 0.150757218928867 1 0.0311766564846039 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43650617 chr5:43650633 nonsynonymous SNV 0.986 1 37 hm5C_associated_SNPs_43482 0 0 1 0 2 NNT chr5:43650689 5'GT 43650689 Upstream 57bp
chr14 102478260 102478260 1 + G C UCEC 102478245 + 102478225 102478265 41 ATCAGATCACCCAGATCAATCATGGCCTGATGATGGTGGGG ATCAGATCACCCAGATCAATCATGGCCTGATGATGCTGGGG < 41bp 1 0.199437551380704 1 0.387377172708511 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478245 chr14:102478260 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_43483 0 0 1 0 1 DYNC1H1 chr14:102478212 3'AG 102478212 Downstream 49bp
chr14 102478260 102478260 1 + G C UCEC 102478250 + 102478230 102478270 41 ATCACCCAGATCAATCATGGCCTGATGATGGTGGGGCCCTC ATCACCCAGATCAATCATGGCCTGATGATGCTGGGGCCCTC < 41bp 1 0.114445987089969 1 0.0786656439304352 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478250 chr14:102478260 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_43484 0 0 1 0 1 DYNC1H1 chr14:102478212 3'AG 102478212 Downstream 49bp
chr14 102478260 102478260 1 + G C UCEC 102478266 + 102478246 102478286 41 ATGGCCTGATGATGGTGGGGCCCTCGGGAAGTGGGAAGAGC ATGGCCTGATGATGCTGGGGCCCTCGGGAAGTGGGAAGAGC < 41bp 1 0.0103675154400143 1 0.0698511302471161 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478266 chr14:102478260 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_43485 0 0 1 0 1 DYNC1H1 chr14:102478212 3'AG 102478212 Downstream 49bp
chr14 102478260 102478260 1 + G C UCEC 102478267 + 102478247 102478287 41 TGGCCTGATGATGGTGGGGCCCTCGGGAAGTGGGAAGAGCA TGGCCTGATGATGCTGGGGCCCTCGGGAAGTGGGAAGAGCA < 41bp 1 0.0227083600055004 1 0.169730126857758 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478267 chr14:102478260 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_43486 0 0 1 0 1 DYNC1H1 chr14:102478212 3'AG 102478212 Downstream 49bp
chr14 102478260 102478260 1 + G C UCEC 102478270 + 102478250 102478290 41 CCTGATGATGGTGGGGCCCTCGGGAAGTGGGAAGAGCATGG CCTGATGATGCTGGGGCCCTCGGGAAGTGGGAAGAGCATGG < 41bp 1 0.71228813353173 1 0.800089240074158 experiment 0.57542373293654 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478270 chr14:102478260 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_43487 0 0 1 0 1 DYNC1H1 chr14:102478212 3'AG 102478212 Downstream 49bp
chr6 158870105 158870105 1 + C T UCEC 158870090 + 158870070 158870110 41 TGCCACGGCAGAATGCTGGCCCACGTCCTCTTGCACGAGTC TGCCACGGCAGAATGCTGGCCCACGTCCTCTTGCATGAGTC < 41bp 1 0.110305141985997 1 0.0962307751178741 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TULP4 ENSG00000130338 CDS Human protein_coding chr6:158870090 chr6:158870105 synonymous SNV . 0 36 hm5C_associated_SNPs_43489 0 0 1 0 1 TULP4 chr6:158870028 3'AG 158870028 Downstream 78bp
chr7 44100404 44100404 1 + C T UCEC 44100392 + 44100372 44100412 41 GCAGCCGACGACACAGAGATCTCCTTTGACCCCGAGAACCT GCAGCCGACGACACAGAGATCTCCTTTGACCCTGAGAACCT < 41bp 1 0.543316338428649 1 0.592525780200958 experiment 0.913367323142702 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DBNL ENSG00000136279 CDS Human protein_coding chr7:44100392 chr7:44100404 synonymous SNV . 0 33 hm5C_associated_SNPs_43491 0 0 1 0 1 DBNL chr7:44100376 3'AG 44100376 Downstream 29bp
chr17 78704415 78704415 1 + G A UCEC 78704396 + 78704376 78704416 41 TCCCTCTGTCCATATATGACCTGCAGACGTGGATGGGCAGC TCCCTCTGTCCATATATGACCTGCAGACGTGGATGGGCAAC < 41bp 1 0.464800867394147 1 0.165069103240967 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPTOR ENSG00000141564 CDS Human protein_coding chr17:78704396 chr17:78704415 nonsynonymous SNV 0.943 4 40 hm5C_associated_SNPs_43492 0 0 1 0 2 RPTOR chr17:78704360 3'AG 78704360 Downstream 56bp
chr17 78704415 78704415 1 + G A UCEC 78704396 + 78704376 78704416 41 TCCCTCTGTCCATATATGACCTGCAGACGTGGATGGGCAGC TCCCTCTGTCCATATATGACCTGCAGACGTGGATGGGCAAC < 41bp 1 0.464800867394147 1 0.165069103240967 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPTOR ENSG00000141564 CDS Human protein_coding chr17:78704396 chr17:78704415 nonsynonymous SNV 0.943 4 40 hm5C_associated_SNPs_43492 0 0 1 0 2 RPTOR chr17:78704506 5'GT 78704506 Upstream 92bp
chr3 51624525 51624525 1 + A T UCEC 51624531 + 51624511 51624551 41 GGAGGAGGAGGAGGAGGTGGCAGTGGAGGAGTGTGACAGGG GGAGGAGGAGGAGGTGGTGGCAGTGGAGGAGTGTGACAGGG < 41bp 1 0.673402864319379 1 0.747793436050415 experiment 0.653194271361242 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51624531 chr3:51624525 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_43494 0 0 1 0 1 RAD54L2 chr3:51624575 5'GT 51624575 Upstream 51bp
chr6 35047371 35047371 1 + G A UCEC 35047379 + 35047359 35047399 41 CTGCAGGACTACGTCCATTCCTTCTTGTCAAGTGGTTACAG CTGCAGGACTACATCCATTCCTTCTTGTCAAGTGGTTACAG < 41bp 1 0.142723593694156 1 0.0201468169689178 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKS1A ENSG00000064999 CDS Human protein_coding chr6:35047379 chr6:35047371 nonsynonymous SNV 0.944 0 13 hm5C_associated_SNPs_43495 0 0 0 0 2 ANKS1A chr6:35047293 3'AG 35047293 Downstream 79bp
chr6 35047371 35047371 1 + G A UCEC 35047379 + 35047359 35047399 41 CTGCAGGACTACGTCCATTCCTTCTTGTCAAGTGGTTACAG CTGCAGGACTACATCCATTCCTTCTTGTCAAGTGGTTACAG < 41bp 1 0.142723593694156 1 0.0201468169689178 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKS1A ENSG00000064999 CDS Human protein_coding chr6:35047379 chr6:35047371 nonsynonymous SNV 0.944 0 13 hm5C_associated_SNPs_43495 0 0 0 0 2 ANKS1A chr6:35047445 5'GT 35047445 Upstream 75bp
chr5 53815360 53815360 1 + G T UCEC 53815367 + 53815347 53815387 41 TAGCGCTGTATCAGGGGCATCTGGCTAACTTCCCGGACATC TAGCGCTGTATCATGGGCATCTGGCTAACTTCCCGGACATC < 41bp 1 0.328000873402531 1 0.185053616762161 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SNX18 ENSG00000178996 CDS Human protein_coding chr5:53815367 chr5:53815360 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_43496 0 0 1 0 1 SNX18 chr5:53815403 5'GT 53815403 Upstream 44bp
chr3 132394156 132394156 1 + C T UCEC 132394139 + 132394119 132394159 41 TTTTTACCTTGGATACAATGCAATGCAGGATTTTTTTCCTA TTTTTACCTTGGATACAATGCAATGCAGGATTTTTTTTCTA < 41bp 1 0.302233413658994 1 0.0702444911003113 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UBA5 ENSG00000081307 CDS Human protein_coding chr3:132394139 chr3:132394156 nonsynonymous SNV 0.997 4 38 hm5C_associated_SNPs_43497 0 0 1 0 2 UBA5 chr3:132394092 3'AG 132394092 Downstream 65bp
chr3 132394156 132394156 1 + C T UCEC 132394139 + 132394119 132394159 41 TTTTTACCTTGGATACAATGCAATGCAGGATTTTTTTCCTA TTTTTACCTTGGATACAATGCAATGCAGGATTTTTTTTCTA < 41bp 1 0.302233413658994 1 0.0702444911003113 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UBA5 ENSG00000081307 CDS Human protein_coding chr3:132394139 chr3:132394156 nonsynonymous SNV 0.997 4 38 hm5C_associated_SNPs_43497 0 0 1 0 2 UBA5 chr3:132394227 5'GT 132394227 Upstream 72bp
chr3 191074910 191074910 1 + C T UCEC 191074906 + 191074886 191074926 41 ATTTTGCTGTCCTGGAGGACCACACCCTGGCTCACAGCCTG ATTTTGCTGTCCTGGAGGACCACATCCTGGCTCACAGCCTG < 41bp 1 0.544312043828636 1 0.217493265867233 experiment 0.911375912342727 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CCDC50 ENSG00000152492 CDS Human protein_coding chr3:191074906 chr3:191074910 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_43498 0 0 1 0 1 CCDC50 chr3:191074877 3'AG 191074877 Downstream 34bp
chr1 183083817 183083817 1 + C A UCEC 183083799 + 183083779 183083819 41 TGTGAGAGGTGCCGAGAGAACTTCTTCCGCCTTGGCAACAA TGTGAGAGGTGCCGAGAGAACTTCTTCCGCCTTGGCAAAAA < 41bp 1 0.366418832019112 1 0.183221280574799 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183083799 chr1:183083817 nonsynonymous SNV 0.879 0 39 hm5C_associated_SNPs_43499 0 0 1 0 1 LAMC1 chr1:183083854 5'GT 183083854 Upstream 38bp
chr12 53454463 53454463 1 + C T UCEC 53454477 + 53454457 53454497 41 AGCACCCGGCGACAGGACACCAGGTCCCCCACCTCAGCGCC AGCACCTGGCGACAGGACACCAGGTCCCCCACCTCAGCGCC < 41bp 1 0.559252771692998 1 0.821986556053162 experiment 0.881494456614004 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TNS2 ENSG00000111077 CDS Human protein_coding chr12:53454477 chr12:53454463 nonsynonymous SNV 0.936 3 7 hm5C_associated_SNPs_43500 0 0 0 0 1 TNS2 chr12:53454459 3'AG 53454459 Downstream 5bp
chr13 111160566 111160566 1 + A G UCEC 111160562 + 111160542 111160582 41 TTGTGGATCGGATATTCCTTCCTCATGGTATGTGGTATTTG TTGTGGATCGGATATTCCTTCCTCGTGGTATGTGGTATTTG < 41bp 1 0.0524580561297106 1 0.0656821429729462 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111160562 chr13:111160566 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_43501 0 0 0 0 1 COL4A2 chr13:111160568 5'GT 111160568 Upstream 3bp
chr17 38318322 38318322 1 + A C UCEC 38318303 + 38318283 38318323 41 TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGAT TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGCT < 41bp 1 0.123615591587093 1 0.176970422267914 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318303 chr17:38318322 nonsynonymous SNV 0.997 4 40 hm5C_associated_SNPs_43502 0 0 1 0 2 CASC3 chr17:38318255 3'AG 38318255 Downstream 68bp
chr17 38318322 38318322 1 + A C UCEC 38318303 + 38318283 38318323 41 TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGAT TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGCT < 41bp 1 0.123615591587093 1 0.176970422267914 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318303 chr17:38318322 nonsynonymous SNV 0.997 4 40 hm5C_associated_SNPs_43502 0 0 1 0 2 CASC3 chr17:38318406 5'GT 38318406 Upstream 85bp
chr16 630878 630878 1 + C T UCEC 630864 + 630844 630884 41 CTCCTCTGCCACAGCTCCGGCTCCTGGTGGTCGCCGTGCAG CTCCTCTGCCACAGCTCCGGCTCCTGGTGGTCGCTGTGCAG < 41bp 1 0.268281032599417 1 0.435722827911377 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIGQ ENSG00000007541 CDS Human protein_coding chr16:630864 chr16:630878 synonymous SNV . 0 35 hm5C_associated_SNPs_43503 0 0 1 0 2 PIGQ chr16:630858 3'AG 630858 Downstream 21bp
chr16 630878 630878 1 + C T UCEC 630864 + 630844 630884 41 CTCCTCTGCCACAGCTCCGGCTCCTGGTGGTCGCCGTGCAG CTCCTCTGCCACAGCTCCGGCTCCTGGTGGTCGCTGTGCAG < 41bp 1 0.268281032599417 1 0.435722827911377 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIGQ ENSG00000007541 CDS Human protein_coding chr16:630864 chr16:630878 synonymous SNV . 0 35 hm5C_associated_SNPs_43503 0 0 1 0 2 PIGQ chr16:630972 5'GT 630972 Upstream 95bp
chr6 87865453 87865453 1 + C T UCEC 87865437 + 87865417 87865457 41 GCGGGAGAGCCGGGTACCGGCCGTGGAAGCGGCCACCGACT GCGGGAGAGCCGGGTACCGGCCGTGGAAGCGGCCACTGACT < 41bp 1 0.421926107750014 1 0.308135598897934 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF292 ENSG00000188994 CDS Human protein_coding chr6:87865437 chr6:87865453 stopgain 0.861 0 37 hm5C_associated_SNPs_43504 0 0 1 0 1 ZNF292 chr6:87865477 5'GT 87865477 Upstream 25bp
chr17 80529627 80529627 1 + G A UCEC 80529633 + 80529613 80529653 41 CGCCTTACTCCTACGCGCAGCTGATAGTTCAGGCGATTACG CGCCTTACTCCTACACGCAGCTGATAGTTCAGGCGATTACG < 41bp 1 0.0844609746053686 1 0.0495160222053528 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80529633 chr17:80529627 nonsynonymous SNV 0.894 4 15 hm5C_associated_SNPs_43505 0 0 1 0 1 FOXK2 chr17:80529600 3'AG 80529600 Downstream 28bp
chr19 17316780 17316780 1 + C T UCEC 17316775 + 17316755 17316795 41 CCCCGGCACTGCAGGGCGAGCCAGGCGTTGAGCCTGGCCAC CCCCGGCACTGCAGGGCGAGCCAGGTGTTGAGCCTGGCCAC < 41bp 1 0.285306011935405 1 0.464304864406586 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17316775 chr19:17316780 synonymous SNV . 0 26 hm5C_associated_SNPs_43507 0 0 1 0 1 MYO9B chr19:17316769 3'AG 17316769 Downstream 12bp
chr6 32944234 32944234 1 + T C UCEC 32944227 + 32944207 32944247 41 TTACTGCAGCTCCTCCAGCCCAGCCCCTTGCCAAGGTATGA TTACTGCAGCTCCTCCAGCCCAGCCCCCTGCCAAGGTATGA < 41bp 1 0.31217805626898 1 0.0967797338962555 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32944227 chr6:32944234 nonsynonymous SNV 0.999 2 28 hm5C_associated_SNPs_43509 0 0 1 0 1 BRD2 chr6:32944241 5'GT 32944241 Upstream 8bp
chr10 101515437 101515437 1 + G T UCEC 101515429 + 101515409 101515449 41 ACTTTCTTGCTCAGAATATTCCCTAAAGGTAACAGATGTGA ACTTTCTTGCTCAGAATATTCCCTAAAGTTAACAGATGTGA < 41bp 1 0.400543321185126 1 0.151019334793091 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CUTC ENSG00000119929 CDS Human protein_coding chr10:101515429 chr10:101515437 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_43510 0 0 1 3 1 CUTC chr10:101515382 3'AG 101515382 Downstream 56bp
chr10 102798430 102798430 1 + G A UCEC 102798423 + 102798403 102798443 41 CGCCCCTGGCTGGGGGCACCCCTGCAGGTGGGACTGGTGGG CGCCCCTGGCTGGGGGCACCCCTGCAGATGGGACTGGTGGG < 41bp 1 0.181633417860062 1 0.643294930458069 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SFXN3 ENSG00000107819 CDS Human protein_coding chr10:102798423 chr10:102798430 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_43511 0 0 1 0 2 SFXN3 chr10:102798400 3'AG 102798400 Downstream 31bp
chr10 102798430 102798430 1 + G A UCEC 102798423 + 102798403 102798443 41 CGCCCCTGGCTGGGGGCACCCCTGCAGGTGGGACTGGTGGG CGCCCCTGGCTGGGGGCACCCCTGCAGATGGGACTGGTGGG < 41bp 1 0.181633417860062 1 0.643294930458069 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SFXN3 ENSG00000107819 CDS Human protein_coding chr10:102798423 chr10:102798430 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_43511 0 0 1 0 2 SFXN3 chr10:102798449 5'GT 102798449 Upstream 20bp
chr1 155582023 155582023 1 + G A UCEC 155582039 + 155582019 155582059 41 GCGCGAAGGCGGCAGAGCTGCTACAAGATGAATATTCAGGG GCGCAAAGGCGGCAGAGCTGCTACAAGATGAATATTCAGGG < 41bp 1 0.771941118776485 1 0.380284875631332 experiment 0.456117762447031 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582039 chr1:155582023 synonymous SNV . 0 5 hm5C_associated_SNPs_43512 0 0 0 0 2 MSTO1 chr1:155581973 3'AG 155581973 Downstream 51bp
chr1 155582023 155582023 1 + G A UCEC 155582039 + 155582019 155582059 41 GCGCGAAGGCGGCAGAGCTGCTACAAGATGAATATTCAGGG GCGCAAAGGCGGCAGAGCTGCTACAAGATGAATATTCAGGG < 41bp 1 0.771941118776485 1 0.380284875631332 experiment 0.456117762447031 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582039 chr1:155582023 synonymous SNV . 0 5 hm5C_associated_SNPs_43512 0 0 0 0 2 MSTO1 chr1:155582107 5'GT 155582107 Upstream 85bp
chr16 69279711 69279711 1 + G T UCEC 69279708 + 69279688 69279728 41 GAAACCTAAGCATGCCGGATCTGGAAAACAGGTGAGGTGTA GAAACCTAAGCATGCCGGATCTGTAAAACAGGTGAGGTGTA < 41bp 1 0.340472916733255 1 0.639710545539856 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNTB2 ENSG00000168807 CDS Human protein_coding chr16:69279708 chr16:69279711 stopgain 1.000 1 24 hm5C_associated_SNPs_43513 0 0 1 0 1 SNTB2 chr16:69279718 5'GT 69279718 Upstream 8bp
chr8 104066185 104066185 1 + G A UCEC 104066182 + 104066162 104066202 41 TTGTTCTTGATTCAGAGTATCTCGTCACATTACTGGTAGTA TTGTTCTTGATTCAGAGTATCTCATCACATTACTGGTAGTA < 41bp 1 0.210633997331179 1 0.0445477962493896 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V1C1 ENSG00000155097 CDS Human protein_coding chr8:104066182 chr8:104066185 nonsynonymous SNV 0.985 0 24 hm5C_associated_SNPs_43514 0 0 1 0 2 ATP6V1C1 chr8:104066112 3'AG 104066112 Downstream 74bp
chr8 104066185 104066185 1 + G A UCEC 104066182 + 104066162 104066202 41 TTGTTCTTGATTCAGAGTATCTCGTCACATTACTGGTAGTA TTGTTCTTGATTCAGAGTATCTCATCACATTACTGGTAGTA < 41bp 1 0.210633997331179 1 0.0445477962493896 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V1C1 ENSG00000155097 CDS Human protein_coding chr8:104066182 chr8:104066185 nonsynonymous SNV 0.985 0 24 hm5C_associated_SNPs_43514 0 0 1 0 2 ATP6V1C1 chr8:104066210 5'GT 104066210 Upstream 26bp
chr9 91041432 91041432 1 + G A UCEC 91041433 + 91041413 91041453 41 ACCCTAGTCCAGCAGCTCCGCTGCTCACTTAAATACAGATG ACCCTAGTCCAGCAGCTCCACTGCTCACTTAAATACAGATG < 41bp 1 0.465499377763166 1 0.32180392742157 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPIN1 ENSG00000106723 UTR5 Human protein_coding chr9:91041433 chr9:91041432 . . 0 20 hm5C_associated_SNPs_43515 0 0 1 0 1 SPIN1 chr9:91041506 5'GT 91041506 Upstream 75bp
chr6 31936155 31936155 1 + G A UCEC 31936137 + 31936117 31936157 41 CCTTGCAGCCGTGACCACTGCTGTCCAGGAACTGCTGCGTC CCTTGCAGCCGTGACCACTGCTGTCCAGGAACTGCTGCATC < 41bp 1 0.252611249716041 1 0.128022223711014 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31936137 chr6:31936155 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_43516 0 0 1 0 1 SKIV2L chr6:31936105 3'AG 31936105 Downstream 51bp
chr4 106861771 106861771 1 + G T UCEC 106861769 + 106861749 106861789 41 GCAAATGTAAAGAAGGATACCAGGGTGATGGACTGACTTGT GCAAATGTAAAGAAGGATACCATGGTGATGGACTGACTTGT < 41bp 1 0.462985812327996 1 0.323194235563278 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPNT ENSG00000168743 CDS Human protein_coding chr4:106861769 chr4:106861771 nonsynonymous SNV 0.882 2 23 hm5C_associated_SNPs_43517 0 0 1 0 1 NPNT chr4:106861793 5'GT 106861793 Upstream 23bp
chr5 176519765 176519765 1 + C A UCEC 176519758 + 176519738 176519778 41 ATTCCATCGGCCTCTCCTACCAGTCTGCCTGGCTCACGGTG ATTCCATCGGCCTCTCCTACCAGTCTGACTGGCTCACGGTG < 41bp 1 0.300559221952072 1 0.426281869411469 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176519758 chr5:176519765 nonsynonymous SNV 0.975 4 28 hm5C_associated_SNPs_43518 0 0 1 0 1 FGFR4 chr5:176519785 5'GT 176519785 Upstream 21bp
chr4 6596391 6596391 1 + G A UCEC 6596403 + 6596383 6596423 41 CTACTTCCGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG CTACTTCCATGCCCTGCACGCTCTCAATGTCACCTGGCGTG < 41bp 1 0.128371854095402 1 0.0212816298007965 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6596403 chr4:6596391 nonsynonymous SNV 0.133 0 9 hm5C_associated_SNPs_43519 0 0 0 0 2 MAN2B2 chr4:6596348 3'AG 6596348 Downstream 44bp
chr4 6596391 6596391 1 + G A UCEC 6596403 + 6596383 6596423 41 CTACTTCCGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG CTACTTCCATGCCCTGCACGCTCTCAATGTCACCTGGCGTG < 41bp 1 0.128371854095402 1 0.0212816298007965 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6596403 chr4:6596391 nonsynonymous SNV 0.133 0 9 hm5C_associated_SNPs_43519 0 0 0 0 2 MAN2B2 chr4:6596459 5'GT 6596459 Upstream 69bp
chr17 73814820 73814820 1 + G A UCEC 73814827 + 73814807 73814847 41 CCTAGCCCAGTGGGCACCAGCAGCGTCCCCGGCATGAATGC CCTAGCCCAGTGGACACCAGCAGCGTCCCCGGCATGAATGC < 41bp 1 0.665554905056656 1 0.472931206226349 experiment 0.668890189886689 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73814827 chr17:73814820 nonsynonymous SNV 0.998 2 14 hm5C_associated_SNPs_43520 0 0 1 0 2 UNK chr17:73814723 3'AG 73814723 Downstream 98bp
chr17 73814820 73814820 1 + G A UCEC 73814827 + 73814807 73814847 41 CCTAGCCCAGTGGGCACCAGCAGCGTCCCCGGCATGAATGC CCTAGCCCAGTGGACACCAGCAGCGTCCCCGGCATGAATGC < 41bp 1 0.665554905056656 1 0.472931206226349 experiment 0.668890189886689 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73814827 chr17:73814820 nonsynonymous SNV 0.998 2 14 hm5C_associated_SNPs_43520 0 0 1 0 2 UNK chr17:73814897 5'GT 73814897 Upstream 78bp
chr1 22333459 22333459 1 + C A UCEC 22333440 + 22333420 22333460 41 GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCAT < 41bp 1 0.113444355702658 1 0.138887465000153 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333440 chr1:22333459 nonsynonymous SNV 0.603 4 40 hm5C_associated_SNPs_43521 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 89bp
chr1 22333459 22333459 1 + C A UCEC 22333440 + 22333420 22333460 41 GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCAT < 41bp 1 0.113444355702658 1 0.138887465000153 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333440 chr1:22333459 nonsynonymous SNV 0.603 4 40 hm5C_associated_SNPs_43521 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 49bp
chr1 22333459 22333459 1 + C A UCEC 22333441 + 22333421 22333461 41 CCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTT CCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCATT < 41bp 1 0.0416604932832593 1 0.0398607552051544 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333441 chr1:22333459 nonsynonymous SNV 0.603 4 39 hm5C_associated_SNPs_43522 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 89bp
chr1 22333459 22333459 1 + C A UCEC 22333441 + 22333421 22333461 41 CCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTT CCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCATT < 41bp 1 0.0416604932832593 1 0.0398607552051544 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333441 chr1:22333459 nonsynonymous SNV 0.603 4 39 hm5C_associated_SNPs_43522 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 49bp
chr1 22333459 22333459 1 + C A UCEC 22333442 + 22333422 22333462 41 CGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTC CGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCATTC < 41bp 1 0.404762002259836 1 0.276446998119354 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333442 chr1:22333459 nonsynonymous SNV 0.603 4 38 hm5C_associated_SNPs_43523 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 89bp
chr1 22333459 22333459 1 + C A UCEC 22333442 + 22333422 22333462 41 CGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTC CGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCATTC < 41bp 1 0.404762002259836 1 0.276446998119354 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333442 chr1:22333459 nonsynonymous SNV 0.603 4 38 hm5C_associated_SNPs_43523 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 49bp
chr1 22333459 22333459 1 + C A UCEC 22333444 + 22333424 22333464 41 TCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCC TCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCATTCCC < 41bp 1 0.301237973576534 1 0.242042005062103 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333444 chr1:22333459 nonsynonymous SNV 0.603 4 36 hm5C_associated_SNPs_43524 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 89bp
chr1 22333459 22333459 1 + C A UCEC 22333444 + 22333424 22333464 41 TCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCC TCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCATTCCC < 41bp 1 0.301237973576534 1 0.242042005062103 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333444 chr1:22333459 nonsynonymous SNV 0.603 4 36 hm5C_associated_SNPs_43524 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 49bp
chr1 22333459 22333459 1 + C A UCEC 22333445 + 22333425 22333465 41 CCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCA CCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCATTCCCA < 41bp 1 0.268783527929949 1 0.263598799705505 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333445 chr1:22333459 nonsynonymous SNV 0.603 4 35 hm5C_associated_SNPs_43525 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 89bp
chr1 22333459 22333459 1 + C A UCEC 22333445 + 22333425 22333465 41 CCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCA CCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCATTCCCA < 41bp 1 0.268783527929949 1 0.263598799705505 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333445 chr1:22333459 nonsynonymous SNV 0.603 4 35 hm5C_associated_SNPs_43525 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 49bp
chr1 22333459 22333459 1 + C A UCEC 22333446 + 22333426 22333466 41 CAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCAA CAGCTCGCCTCACTCCCTCCCGCTGGTGACATCATTCCCAA < 41bp 1 0.606835143259522 1 0.780604243278503 experiment 0.786329713480955 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333446 chr1:22333459 nonsynonymous SNV 0.603 4 34 hm5C_associated_SNPs_43526 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 89bp
chr1 22333459 22333459 1 + C A UCEC 22333446 + 22333426 22333466 41 CAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCAA CAGCTCGCCTCACTCCCTCCCGCTGGTGACATCATTCCCAA < 41bp 1 0.606835143259522 1 0.780604243278503 experiment 0.786329713480955 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333446 chr1:22333459 nonsynonymous SNV 0.603 4 34 hm5C_associated_SNPs_43526 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 49bp
chr11 58379208 58379208 1 + G T UCEC 58379202 + 58379182 58379222 41 AATTAGAGAGGATGAGGAACCTCCAAGGAAGTGAGTAGGCA AATTAGAGAGGATGAGGAACCTCCAATGAAGTGAGTAGGCA < 41bp 1 0.791828291226534 1 0.889111042022705 experiment 0.416343417546932 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58379202 chr11:58379208 nonsynonymous SNV 0.998 1 27 hm5C_associated_SNPs_43527 0 0 1 0 1 ZFP91 chr11:58379211 5'GT 58379211 Upstream 4bp
chr11 58379208 58379208 1 + G T UCEC 58379204 + 58379184 58379224 41 TTAGAGAGGATGAGGAACCTCCAAGGAAGTGAGTAGGCAAT TTAGAGAGGATGAGGAACCTCCAATGAAGTGAGTAGGCAAT < 41bp 1 0.125105631046765 1 0.250145226716995 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58379204 chr11:58379208 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_43528 0 0 1 0 1 ZFP91 chr11:58379211 5'GT 58379211 Upstream 4bp
chr11 58379208 58379208 1 + G T UCEC 58379205 + 58379185 58379225 41 TAGAGAGGATGAGGAACCTCCAAGGAAGTGAGTAGGCAATT TAGAGAGGATGAGGAACCTCCAATGAAGTGAGTAGGCAATT < 41bp 1 0.221269211921366 1 0.108939409255981 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58379205 chr11:58379208 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_43529 0 0 1 0 1 ZFP91 chr11:58379211 5'GT 58379211 Upstream 4bp
chr12 112940012 112940012 1 + G A UCEC 112940029 + 112940009 112940049 41 GTGGAGATCAGAGCCCTCTCCCGCCTTGTACTCCAACGCCA GTGAAGATCAGAGCCCTCTCCCGCCTTGTACTCCAACGCCA < 41bp 1 0.325557920314804 1 0.127474308013916 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112940029 chr12:112940012 nonsynonymous SNV 0.999 1 4 hm5C_associated_SNPs_43530 0 0 1 0 1 PTPN11 chr12:112939948 3'AG 112939948 Downstream 65bp
chr22 41924513 41924513 1 + G A UCEC 41924519 + 41924499 41924539 41 TCAAGCACCCCAACGGGACCCAGGAGACCATCCTCCTGAAC TCAAGCACCCCAACAGGACCCAGGAGACCATCCTCCTGAAC < 41bp 1 0.799185778386907 1 0.697865843772888 experiment 0.401628443226185 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41924519 chr22:41924513 nonsynonymous SNV 0.992 4 15 hm5C_associated_SNPs_43531 0 0 1 0 1 ACO2 chr22:41924483 3'AG 41924483 Downstream 31bp
chr18 13095639 13095639 1 + C T UCEC 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.170361069142159 1 0.0963205695152283 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095639 nonsynonymous SNV 0.003 1 7 hm5C_associated_SNPs_43532 0 0 1 11 1 CEP192 chr18:13095680 5'GT 13095680 Upstream 42bp
chr18 13095639 13095639 1 + C T UCEC 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.579630832732494 1 0.149724245071411 experiment 0.840738334535013 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095639 nonsynonymous SNV 0.003 1 5 hm5C_associated_SNPs_43533 0 0 1 11 1 CEP192 chr18:13095680 5'GT 13095680 Upstream 42bp
chr12 123461501 123461501 1 + G A UCEC 123461515 + 123461495 123461535 41 CCAGCGGCTGGAGACAGTATCGGGTGAGGTCCTGGCCCTGA CCAGCGACTGGAGACAGTATCGGGTGAGGTCCTGGCCCTGA < 41bp 1 0.783675742495551 1 0.9425328373909 experiment 0.432648515008897 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGFOD2 ENSG00000111325 CDS Human protein_coding chr12:123461515 chr12:123461501 synonymous SNV . 0 7 hm5C_associated_SNPs_43534 0 0 1 0 3 OGFOD2 chr12:123461418 3'AG 123461418 Downstream 84bp
chr12 123461501 123461501 1 + G A UCEC 123461515 + 123461495 123461535 41 CCAGCGGCTGGAGACAGTATCGGGTGAGGTCCTGGCCCTGA CCAGCGACTGGAGACAGTATCGGGTGAGGTCCTGGCCCTGA < 41bp 1 0.783675742495551 1 0.9425328373909 experiment 0.432648515008897 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGFOD2 ENSG00000111325 CDS Human protein_coding chr12:123461515 chr12:123461501 synonymous SNV . 0 7 hm5C_associated_SNPs_43534 0 0 1 0 3 OGFOD2 chr12:123461510 5'GT 123461510 Upstream 10bp
chr12 123461501 123461501 1 + G A UCEC 123461515 + 123461495 123461535 41 CCAGCGGCTGGAGACAGTATCGGGTGAGGTCCTGGCCCTGA CCAGCGACTGGAGACAGTATCGGGTGAGGTCCTGGCCCTGA < 41bp 1 0.783675742495551 1 0.9425328373909 experiment 0.432648515008897 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGFOD2 ENSG00000111325 CDS Human protein_coding chr12:123461515 chr12:123461501 synonymous SNV . 0 7 hm5C_associated_SNPs_43534 0 0 1 0 3 OGFOD2 chr12:123461517 5'GT 123461517 Upstream 17bp
chr2 27449450 27449450 1 + G A UCEC 27449451 + 27449431 27449471 41 CTCTGCCCTGGCCAGTAAGGCCACAGGTTATCCACTGGCTT CTCTGCCCTGGCCAGTAAGACCACAGGTTATCCACTGGCTT < 41bp 1 0.192570528100393 1 0.0935760736465454 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27449451 chr2:27449450 nonsynonymous SNV 1.000 5 20 hm5C_associated_SNPs_43535 0 0 1 0 2 CAD chr2:27449393 3'AG 27449393 Downstream 58bp
chr2 27449450 27449450 1 + G A UCEC 27449451 + 27449431 27449471 41 CTCTGCCCTGGCCAGTAAGGCCACAGGTTATCCACTGGCTT CTCTGCCCTGGCCAGTAAGACCACAGGTTATCCACTGGCTT < 41bp 1 0.192570528100393 1 0.0935760736465454 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27449451 chr2:27449450 nonsynonymous SNV 1.000 5 20 hm5C_associated_SNPs_43535 0 0 1 0 2 CAD chr2:27449517 5'GT 27449517 Upstream 68bp
chr20 3564713 3564713 1 + C T UCEC 3564722 + 3564702 3564742 41 GGAATGGTATACGATGAGCACCTGCCCCCGTAAGTGAAAAA GGAATGGTATATGATGAGCACCTGCCCCCGTAAGTGAAAAA < 41bp 1 0.0266951390413254 1 0.135832250118256 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATRN ENSG00000088812 CDS Human protein_coding chr20:3564722 chr20:3564713 nonsynonymous SNV 0.973 4 12 hm5C_associated_SNPs_43539 0 0 1 0 1 ATRN chr20:3564730 5'GT 3564730 Upstream 18bp
chr18 77102315 77102315 1 + C T UCEC 77102335 + 77102315 77102355 41 CAAAAGTTCACATCTCGTGTCTAGAACACAAGATATTCATA TAAAAGTTCACATCTCGTGTCTAGAACACAAGATATTCATA < 41bp 1 0.329292454351897 1 0.43024605512619 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP9B ENSG00000166377 CDS Human protein_coding chr18:77102335 chr18:77102315 synonymous SNV . 0 1 hm5C_associated_SNPs_43540 0 0 0 0 2 ATP9B chr18:77102268 3'AG 77102268 Downstream 48bp
chr18 77102315 77102315 1 + C T UCEC 77102335 + 77102315 77102355 41 CAAAAGTTCACATCTCGTGTCTAGAACACAAGATATTCATA TAAAAGTTCACATCTCGTGTCTAGAACACAAGATATTCATA < 41bp 1 0.329292454351897 1 0.43024605512619 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP9B ENSG00000166377 CDS Human protein_coding chr18:77102335 chr18:77102315 synonymous SNV . 0 1 hm5C_associated_SNPs_43540 0 0 0 0 2 ATP9B chr18:77102366 5'GT 77102366 Upstream 52bp
chr10 129231623 129231623 1 + G T UCEC 129231605 + 129231585 129231625 41 GTCCATGGTGCGGTCCTTCACGATGCCTTCCTCATCCCGCC GTCCATGGTGCGGTCCTTCACGATGCCTTCCTCATCCCTCC < 41bp 1 0.577101003719493 1 0.783625185489655 experiment 0.845797992561015 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129231605 chr10:129231623 nonsynonymous SNV 0.883 4 39 hm5C_associated_SNPs_43543 0 0 0 0 2 DOCK1 chr10:129231547 3'AG 129231547 Downstream 77bp
chr10 129231623 129231623 1 + G T UCEC 129231605 + 129231585 129231625 41 GTCCATGGTGCGGTCCTTCACGATGCCTTCCTCATCCCGCC GTCCATGGTGCGGTCCTTCACGATGCCTTCCTCATCCCTCC < 41bp 1 0.577101003719493 1 0.783625185489655 experiment 0.845797992561015 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129231605 chr10:129231623 nonsynonymous SNV 0.883 4 39 hm5C_associated_SNPs_43543 0 0 0 0 2 DOCK1 chr10:129231692 5'GT 129231692 Upstream 70bp
chrX 70354254 70354254 1 + G A UCEC 70354269 + 70354249 70354289 41 ACCACGGAGTGGGCCATGCTCCTCCTGGAGATCATCATCAG ACCACAGAGTGGGCCATGCTCCTCCTGGAGATCATCATCAG < 41bp 1 0.146424556339184 1 0.426467627286911 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70354269 chrX:70354254 synonymous SNV . 0 6 hm5C_associated_SNPs_43544 1 0 0 0 2 MED12 chrX:70354207 3'AG 70354207 Downstream 48bp
chrX 70354254 70354254 1 + G A UCEC 70354269 + 70354249 70354289 41 ACCACGGAGTGGGCCATGCTCCTCCTGGAGATCATCATCAG ACCACAGAGTGGGCCATGCTCCTCCTGGAGATCATCATCAG < 41bp 1 0.146424556339184 1 0.426467627286911 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70354269 chrX:70354254 synonymous SNV . 0 6 hm5C_associated_SNPs_43544 1 0 0 0 2 MED12 chrX:70354316 5'GT 70354316 Upstream 63bp
chr11 62502875 62502875 1 + C A UCEC 62502861 + 62502841 62502881 41 TTTGGCCCATTAGCTTGTCTCCTTCAGATGGAGCCCGTGAA TTTGGCCCATTAGCTTGTCTCCTTCAGATGGAGCACGTGAA < 41bp 1 0.0268915050280996 1 0.0603937208652496 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TTC9C ENSG00000162222 CDS Human protein_coding chr11:62502861 chr11:62502875 nonsynonymous SNV 0.996 0 35 hm5C_associated_SNPs_43545 0 0 1 0 1 TTC9C chr11:62502854 3'AG 62502854 Downstream 22bp
chr21 45217977 45217977 1 + C T UCEC 45217964 + 45217944 45217984 41 CGCGCTGTCCCAGAAGAGGTCTGAGAAGCCGCCCGCAGGTG CGCGCTGTCCCAGAAGAGGTCTGAGAAGCCGCCTGCAGGTG < 41bp 1 0.692935104611386 1 0.173383921384811 experiment 0.614129790777229 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217964 chr21:45217977 synonymous SNV . 0 34 hm5C_associated_SNPs_43546 0 0 1 0 1 RRP1 chr21:45217981 5'GT 45217981 Upstream 5bp
chr19 11152175 11152175 1 + C T UCEC 11152165 + 11152145 11152185 41 CGGCCGCCTGCCGAGAAACTCTCCCCTAACCCACCCAACCT CGGCCGCCTGCCGAGAAACTCTCCCCTAACTCACCCAACCT < 41bp 1 0.32539512070843 1 0.326309084892273 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11152165 chr19:11152175 nonsynonymous SNV 0.928 3 31 hm5C_associated_SNPs_43547 0 0 1 0 1 SMARCA4 chr19:11152236 5'GT 11152236 Upstream 62bp
chr19 11152175 11152175 1 + C T UCEC 11152168 + 11152148 11152188 41 CCGCCTGCCGAGAAACTCTCCCCTAACCCACCCAACCTCAC CCGCCTGCCGAGAAACTCTCCCCTAACTCACCCAACCTCAC < 41bp 1 0.157498626101967 1 0.142834037542343 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11152168 chr19:11152175 nonsynonymous SNV 0.928 3 28 hm5C_associated_SNPs_43548 0 0 1 0 1 SMARCA4 chr19:11152236 5'GT 11152236 Upstream 62bp
chr8 145139390 145139390 1 + G A UCEC 145139396 + 145139376 145139416 41 CTCATGGTTCTGCGGCAGGCCTCCGGCCGCCCCCACGGCTC CTCATGGTTCTGCGACAGGCCTCCGGCCGCCCCCACGGCTC < 41bp 1 0.773439976865011 1 0.662142515182495 experiment 0.453120046269979 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139396 chr8:145139390 synonymous SNV . 0 15 hm5C_associated_SNPs_43549 0 0 1 0 1 GPAA1 chr8:145139316 3'AG 145139316 Downstream 75bp
chr19 14580190 14580190 1 + A G UCEC 14580202 + 14580182 14580222 41 CAGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTC CAGTGACCGGTGCGGGACACCCCTTCCTGGTGAACCTCTTC < 41bp 1 0.0638307844329068 1 0.109463095664978 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580202 chr19:14580190 nonsynonymous SNV 0.117 0 9 hm5C_associated_SNPs_43550 0 0 1 0 1 PKN1 chr19:14580153 3'AG 14580153 Downstream 38bp
chr19 14580190 14580190 1 + A G UCEC 14580203 + 14580183 14580223 41 AGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCG AGTGACCGGTGCGGGACACCCCTTCCTGGTGAACCTCTTCG < 41bp 1 0.0238416377249172 1 0.15375617146492 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580203 chr19:14580190 nonsynonymous SNV 0.117 0 8 hm5C_associated_SNPs_43551 0 0 1 0 1 PKN1 chr19:14580153 3'AG 14580153 Downstream 38bp
chr19 14580190 14580190 1 + A G UCEC 14580207 + 14580187 14580227 41 ACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCGGCTG ACCGGTGCGGGACACCCCTTCCTGGTGAACCTCTTCGGCTG < 41bp 1 0.473543095213138 1 0.613941669464111 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580207 chr19:14580190 nonsynonymous SNV 0.117 0 4 hm5C_associated_SNPs_43552 0 0 1 0 1 PKN1 chr19:14580153 3'AG 14580153 Downstream 38bp
chr10 93751971 93751971 1 + A G UCEC 93751990 + 93751970 93752010 41 CACAAGTAGGCGAGGTCCTACCCCCAAAGCAGTAAAAGCTC CGCAAGTAGGCGAGGTCCTACCCCCAAAGCAGTAAAAGCTC < 41bp 1 0.182450115833101 1 0.0966578125953674 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93751990 chr10:93751971 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_43553 0 0 1 0 2 BTAF1 chr10:93751876 3'AG 93751876 Downstream 96bp
chr10 93751971 93751971 1 + A G UCEC 93751990 + 93751970 93752010 41 CACAAGTAGGCGAGGTCCTACCCCCAAAGCAGTAAAAGCTC CGCAAGTAGGCGAGGTCCTACCCCCAAAGCAGTAAAAGCTC < 41bp 1 0.182450115833101 1 0.0966578125953674 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93751990 chr10:93751971 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_43553 0 0 1 0 2 BTAF1 chr10:93752066 5'GT 93752066 Upstream 96bp
chr10 93751971 93751971 1 + A G UCEC 93751991 + 93751971 93752011 41 ACAAGTAGGCGAGGTCCTACCCCCAAAGCAGTAAAAGCTCA GCAAGTAGGCGAGGTCCTACCCCCAAAGCAGTAAAAGCTCA < 41bp 1 0.733967283561842 1 0.734308838844299 experiment 0.532065432876315 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93751991 chr10:93751971 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_43554 0 0 1 0 2 BTAF1 chr10:93751876 3'AG 93751876 Downstream 96bp
chr10 93751971 93751971 1 + A G UCEC 93751991 + 93751971 93752011 41 ACAAGTAGGCGAGGTCCTACCCCCAAAGCAGTAAAAGCTCA GCAAGTAGGCGAGGTCCTACCCCCAAAGCAGTAAAAGCTCA < 41bp 1 0.733967283561842 1 0.734308838844299 experiment 0.532065432876315 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93751991 chr10:93751971 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_43554 0 0 1 0 2 BTAF1 chr10:93752066 5'GT 93752066 Upstream 96bp
chr2 86360531 86360531 1 + G A UCEC 86360529 + 86360509 86360549 41 AAGCATTGGATGTGGCCAATCGGCTAGAAGTGATTCCTAAA AAGCATTGGATGTGGCCAATCGACTAGAAGTGATTCCTAAA < 41bp 1 0.430285864450765 1 0.666226863861084 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86360529 chr2:86360531 synonymous SNV . 0 23 hm5C_associated_SNPs_43555 0 0 1 0 2 PTCD3 chr2:86360469 3'AG 86360469 Downstream 63bp
chr2 86360531 86360531 1 + G A UCEC 86360529 + 86360509 86360549 41 AAGCATTGGATGTGGCCAATCGGCTAGAAGTGATTCCTAAA AAGCATTGGATGTGGCCAATCGACTAGAAGTGATTCCTAAA < 41bp 1 0.430285864450765 1 0.666226863861084 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86360529 chr2:86360531 synonymous SNV . 0 23 hm5C_associated_SNPs_43555 0 0 1 0 2 PTCD3 chr2:86360559 5'GT 86360559 Upstream 29bp
chr7 794299 794299 1 + C T UCEC 794297 + 794277 794317 41 AGATCCTCCCTGCCCTGTGCCACGACATCACCGACTGGGTG AGATCCTCCCTGCCCTGTGCCATGACATCACCGACTGGGTG < 41bp 1 0.436712221727731 1 0.0710168182849884 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:794297 chr7:794299 synonymous SNV . 0 23 hm5C_associated_SNPs_43556 0 0 1 0 1 DNAAF5 chr7:794226 3'AG 794226 Downstream 74bp
chr18 20815980 20815980 1 + G A UCEC 20815963 + 20815943 20815983 41 CAGTTCCGTAACCTGAGCCACCGCAGCCTCTCCATAGGCCG CAGTTCCGTAACCTGAGCCACCGCAGCCTCTCCATAGACCG < 41bp 1 0.284048744085178 1 0.20206093788147 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CABLES1 ENSG00000134508 CDS Human protein_coding chr18:20815963 chr18:20815980 nonsynonymous SNV 0.815 3 38 hm5C_associated_SNPs_43557 0 0 0 0 1 CABLES1 chr18:20816015 5'GT 20816015 Upstream 36bp
chr1 109806263 109806263 1 + G A UCEC 109806280 + 109806260 109806300 41 GCAGCAGCCTGGTGGCCTGGCATGGCCTCTCGCTGCCCATC GCAACAGCCTGGTGGCCTGGCATGGCCTCTCGCTGCCCATC < 41bp 1 0.266013247812733 1 0.169173687696457 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806280 chr1:109806263 nonsynonymous SNV 1.000 0 4 hm5C_associated_SNPs_43558 0 0 1 0 1 CELSR2 chr1:109806233 3'AG 109806233 Downstream 31bp
chr5 112868681 112868681 1 + G A UCEC 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA CGCTGTGGCTGAAAGAGTTACCGCAGAGAGACGGGAAAGGA < 41bp 1 0.579148968645285 1 0.102562010288239 experiment 0.841702062709431 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868681 nonsynonymous SNV 0.999 4 20 hm5C_associated_SNPs_43562 0 0 1 0 1 YTHDC2 chr5:112868742 5'GT 112868742 Upstream 62bp
chr5 112868681 112868681 1 + G A UCEC 112868683 + 112868663 112868703 41 GCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT GCTGTGGCTGAAAGAGTTACCGCAGAGAGACGGGAAAGGAT < 41bp 1 0.686558621186589 1 0.764957785606384 experiment 0.626882757626822 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868683 chr5:112868681 nonsynonymous SNV 0.999 4 19 hm5C_associated_SNPs_43563 0 0 1 0 1 YTHDC2 chr5:112868742 5'GT 112868742 Upstream 62bp
chr17 48434076 48434076 1 + C T UCEC 48434072 + 48434052 48434092 41 CTCACTGCTTACACAGCCTTCGCCCGCCTCAGCCTGCACCA CTCACTGCTTACACAGCCTTCGCCTGCCTCAGCCTGCACCA < 41bp 1 0.516027979510062 1 0.154038548469543 experiment 0.967944040979876 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48434072 chr17:48434076 nonsynonymous SNV 0.878 4 25 hm5C_associated_SNPs_43567 0 0 0 0 1 XYLT2 chr17:48434134 5'GT 48434134 Upstream 59bp
chr10 91465098 91465098 1 + T G UCEC 91465083 + 91465063 91465103 41 TTTTAATCAAGAGGGAGTACCTCGACCATCTTATGTTTTTA TTTTAATCAAGAGGGAGTACCTCGACCATCTTATGGTTTTA < 41bp 1 0.777472893959163 1 0.713513374328613 experiment 0.445054212081675 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF20B ENSG00000138182 CDS Human protein_coding chr10:91465083 chr10:91465098 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_43573 0 0 1 0 1 KIF20B chr10:91465051 3'AG 91465051 Downstream 48bp
chr10 75871837 75871837 1 + C A UCEC 75871841 + 75871821 75871861 41 TGGCCGCGGCTCAGTCCTTGCATCGGGAAGCTACCAAGTGG TGGCCGCGGCTCAGTCATTGCATCGGGAAGCTACCAAGTGG < 41bp 1 0.388135893517515 1 0.228924602270126 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75871841 chr10:75871837 synonymous SNV . 0 17 hm5C_associated_SNPs_43574 0 0 0 0 1 VCL chr10:75871870 5'GT 75871870 Upstream 34bp
chr9 80915557 80915557 1 + G T UCEC 80915575 + 80915555 80915595 41 AAGGAGTTGGCATTAGTGTTCTTGGTAAGATTTACTTTTGA AATGAGTTGGCATTAGTGTTCTTGGTAAGATTTACTTTTGA < 41bp 1 0.457170976779826 1 0.481495320796967 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80915575 chr9:80915557 stopgain 0.991 1 3 hm5C_associated_SNPs_43575 0 0 1 0 2 PSAT1 chr9:80915518 3'AG 80915518 Downstream 40bp
chr9 80915557 80915557 1 + G T UCEC 80915575 + 80915555 80915595 41 AAGGAGTTGGCATTAGTGTTCTTGGTAAGATTTACTTTTGA AATGAGTTGGCATTAGTGTTCTTGGTAAGATTTACTTTTGA < 41bp 1 0.457170976779826 1 0.481495320796967 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80915575 chr9:80915557 stopgain 0.991 1 3 hm5C_associated_SNPs_43575 0 0 1 0 2 PSAT1 chr9:80915578 5'GT 80915578 Upstream 22bp
chr10 99416059 99416059 1 + T C UCEC 99416064 + 99416044 99416084 41 AGTATACCTGGCCAGTGAGACCTTCAACTATAGTGCCATTG AGTATACCTGGCCAGCGAGACCTTCAACTATAGTGCCATTG < 41bp 1 0.0121348368773017 1 0.0401354730129242 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PI4K2A ENSG00000155252;ENSG00000249967 CDS Human other chr10:99416064 chr10:99416059 synonymous SNV . 0 16 hm5C_associated_SNPs_43576 0 0 0 0 1 PI4K2A chr10:99416042 3'AG 99416042 Downstream 18bp
chr1 161088974 161088974 1 + C A UCEC 161088961 + 161088941 161088981 41 TCTCCTCTTCCTCCTGCGAACTGCCCCTGGTGGCTGTGTGC TCTCCTCTTCCTCCTGCGAACTGCCCCTGGTGGATGTGTGC < 41bp 1 0.310500881953744 1 0.0882014334201813 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NIT1 ENSG00000158793 CDS Human protein_coding chr1:161088961 chr1:161088974 nonsynonymous SNV 1.000 5 34 hm5C_associated_SNPs_43577 0 0 1 0 1 NIT1 chr1:161088924 3'AG 161088924 Downstream 51bp
chr17 40961480 40961480 1 + C T UCEC 40961460 + 40961440 40961480 41 TCTTATGCAATCCTGACTCACGGAGTGGGAGCCAACACTCC TCTTATGCAATCCTGACTCACGGAGTGGGAGCCAACACTCT < 41bp 1 0.798537787159526 1 0.781481742858887 experiment 0.402924425680949 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control CNTD1 ENSG00000176563 CDS Human protein_coding chr17:40961460 chr17:40961480 nonsynonymous SNV 0.591 0 41 hm5C_associated_SNPs_43578 0 0 0 0 1 CNTD1 chr17:40961383 3'AG 40961383 Downstream 98bp
chr2 207024653 207024653 1 + T A UCEC 207024663 + 207024643 207024683 41 GCGCCCACAATTTGCGCGCTCTCTTTCTGCTGCTCCCCAGC GCGCCCACAAATTGCGCGCTCTCTTTCTGCTGCTCCCCAGC < 41bp 1 0.393951703376626 1 0.0214557647705078 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EEF1B2 ENSG00000114942 UTR5 Human protein_coding chr2:207024663 chr2:207024653 . . 0 11 hm5C_associated_SNPs_43579 0 0 1 0 1 EEF1B2 chr2:207024637 3'AG 207024637 Downstream 17bp
chr6 44219831 44219831 1 + T G UCEC 44219814 + 44219794 44219834 41 CTTCGAGGTGGTATATATGACCGAGCCCATTGACGAGTACT CTTCGAGGTGGTATATATGACCGAGCCCATTGACGAGGACT < 41bp 1 0.368283746877046 1 0.217917144298553 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219814 chr6:44219831 nonsynonymous SNV 0.997 3 38 hm5C_associated_SNPs_43580 0 0 1 0 1 HSP90AB1 chr6:44219736 3'AG 44219736 Downstream 96bp
chr6 44219831 44219831 1 + T G UCEC 44219833 + 44219813 44219853 41 ACCGAGCCCATTGACGAGTACTGTGTGCAGCAGCTCAAGGA ACCGAGCCCATTGACGAGGACTGTGTGCAGCAGCTCAAGGA < 41bp 1 0.490591455860796 1 0.0422308444976807 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219833 chr6:44219831 nonsynonymous SNV 0.997 3 19 hm5C_associated_SNPs_43581 0 0 1 0 1 HSP90AB1 chr6:44219736 3'AG 44219736 Downstream 96bp
chr6 44219831 44219831 1 + T G UCEC 44219840 + 44219820 44219860 41 CCATTGACGAGTACTGTGTGCAGCAGCTCAAGGAATTTGAT CCATTGACGAGGACTGTGTGCAGCAGCTCAAGGAATTTGAT < 41bp 1 0.72619444314767 1 0.266084134578705 experiment 0.547611113704659 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219840 chr6:44219831 nonsynonymous SNV 0.997 3 12 hm5C_associated_SNPs_43582 0 0 1 0 1 HSP90AB1 chr6:44219736 3'AG 44219736 Downstream 96bp
chr6 44219831 44219831 1 + T G UCEC 44219846 + 44219826 44219866 41 ACGAGTACTGTGTGCAGCAGCTCAAGGAATTTGATGGGAAG ACGAGGACTGTGTGCAGCAGCTCAAGGAATTTGATGGGAAG < 41bp 1 0.764479397476816 1 0.475555062294006 experiment 0.471041205046367 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219846 chr6:44219831 nonsynonymous SNV 0.997 3 6 hm5C_associated_SNPs_43583 0 0 1 0 1 HSP90AB1 chr6:44219736 3'AG 44219736 Downstream 96bp
chr1 153750651 153750651 1 + T C UCEC 153750644 + 153750624 153750664 41 CCACTCATCTCAGAGCAAGGCAGAACGTGGCCATAAGGTCC CCACTCATCTCAGAGCAAGGCAGAACGCGGCCATAAGGTCC < 41bp 1 0.60255244984975 1 0.350177705287933 experiment 0.7948951003005 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750644 chr1:153750651 synonymous SNV . 0 28 hm5C_associated_SNPs_43584 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 15bp
chr1 153750651 153750651 1 + T C UCEC 153750655 + 153750635 153750675 41 AGAGCAAGGCAGAACGTGGCCATAAGGTCCGGCTGGCAGTG AGAGCAAGGCAGAACGCGGCCATAAGGTCCGGCTGGCAGTG < 41bp 1 0.486883352567477 1 0.126791030168533 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750655 chr1:153750651 synonymous SNV . 0 17 hm5C_associated_SNPs_43585 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 15bp
chr1 153750651 153750651 1 + T C UCEC 153750663 + 153750643 153750683 41 GCAGAACGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGG GCAGAACGCGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGG < 41bp 1 0.488679726484248 1 0.418095231056213 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750663 chr1:153750651 synonymous SNV . 0 9 hm5C_associated_SNPs_43586 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 15bp
chr1 153750651 153750651 1 + T C UCEC 153750667 + 153750647 153750687 41 AACGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGGGCTG AACGCGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGGGCTG < 41bp 1 0.401820021531387 1 0.125857204198837 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750667 chr1:153750651 synonymous SNV . 0 5 hm5C_associated_SNPs_43587 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 15bp
chr7 100867239 100867239 1 + A C UCEC 100867232 + 100867212 100867252 41 CTGCAGGTGTCTGAAGTGGACTGTGTGAGCCTGGGCATTCC CTGCAGGTGTCTGAAGTGGACTGTGTGCGCCTGGGCATTCC < 41bp 1 0.699743593156315 1 0.0630992949008942 experiment 0.600512813687371 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100867232 chr7:100867239 stoploss 0.602 0 28 hm5C_associated_SNPs_43588 0 0 1 0 1 ZNHIT1 chr7:100867218 3'AG 100867218 Downstream 22bp
chr7 100867239 100867239 1 + A C UCEC 100867242 + 100867222 100867262 41 CTGAAGTGGACTGTGTGAGCCTGGGCATTCCCAGAGAGGAA CTGAAGTGGACTGTGTGCGCCTGGGCATTCCCAGAGAGGAA < 41bp 1 0.712374170144782 1 0.439249008893967 experiment 0.575251659710436 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100867242 chr7:100867239 stoploss 0.602 0 18 hm5C_associated_SNPs_43589 0 0 1 0 1 ZNHIT1 chr7:100867218 3'AG 100867218 Downstream 22bp
chr5 1034382 1034382 1 + C G UCEC 1034388 + 1034368 1034408 41 TCGGTGGAGGAGGACGACCGCCAGGAGTGGACGTTCACGCT TCGGTGGAGGAGGAGGACCGCCAGGAGTGGACGTTCACGCT < 41bp 1 0.37392880213138 1 0.592290222644806 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1034388 chr5:1034382 nonsynonymous SNV 0.001 1 15 hm5C_associated_SNPs_43591 0 0 0 0 2 NKD2 chr5:1034350 3'AG 1034350 Downstream 33bp
chr5 1034382 1034382 1 + C G UCEC 1034388 + 1034368 1034408 41 TCGGTGGAGGAGGACGACCGCCAGGAGTGGACGTTCACGCT TCGGTGGAGGAGGAGGACCGCCAGGAGTGGACGTTCACGCT < 41bp 1 0.37392880213138 1 0.592290222644806 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1034388 chr5:1034382 nonsynonymous SNV 0.001 1 15 hm5C_associated_SNPs_43591 0 0 0 0 2 NKD2 chr5:1034445 5'GT 1034445 Upstream 64bp
chr20 44522629 44522629 1 + T C UCEC 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGGCCTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA < 41bp 1 0.1598584421295 1 0.932987987995148 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522629 nonsynonymous SNV 0.939 5 7 hm5C_associated_SNPs_43592 0 0 1 1 2 CTSA chr20:44522627 3'AG 44522627 Downstream 3bp
chr20 44522629 44522629 1 + T C UCEC 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGGCCTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA < 41bp 1 0.1598584421295 1 0.932987987995148 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522629 nonsynonymous SNV 0.939 5 7 hm5C_associated_SNPs_43592 0 0 1 1 2 CTSA chr20:44522711 5'GT 44522711 Upstream 83bp
chr18 54362334 54362334 1 + T A UCEC 54362330 + 54362310 54362350 41 TGTACATACCAGCACATGGACGACTTGTTTGTGGTCGTGAA TGTACATACCAGCACATGGACGACATGTTTGTGGTCGTGAA < 41bp 1 0.485232930513264 1 0.133305191993713 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR7 ENSG00000091157 CDS Human protein_coding chr18:54362330 chr18:54362334 nonsynonymous SNV 0.981 4 25 hm5C_associated_SNPs_43593 0 0 0 0 1 WDR7 chr18:54362429 5'GT 54362429 Upstream 96bp
chr11 309112 309112 1 + A G UCEC 309126 + 309106 309146 41 ATCTTCATGACCATTCTGCTCATCATCATCCCAGTGTTGGT ATCTTCGTGACCATTCTGCTCATCATCATCCCAGTGTTGGT < 41bp 1 0.419040884249255 1 0.0389183163642883 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFITM2 ENSG00000185201 CDS Human protein_coding chr11:309126 chr11:309112 nonsynonymous SNV 0.000 1 7 hm5C_associated_SNPs_43594 0 0 1 0 1 IFITM2 chr11:309013 3'AG 309013 Downstream 100bp
chr19 50753079 50753079 1 + C T UCEC 50753062 + 50753042 50753082 41 CTCGACCTGCAGCCCTGCATCGACCTCATCGAGCGGCCGGT CTCGACCTGCAGCCCTGCATCGACCTCATCGAGCGGCTGGT < 41bp 1 0.203581630011409 1 0.512857735157013 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50753062 chr19:50753079 nonsynonymous SNV 0.986 3 38 hm5C_associated_SNPs_43595 1 0 0 0 1 MYH14 chr19:50753080 5'GT 50753080 Upstream 2bp
chr7 5644995 5644995 1 + T G UCEC 5644976 + 5644956 5644996 41 GGCGACACTCCTGTGGACTTCTTCTTCGAGTTCTGCGACTA GGCGACACTCCTGTGGACTTCTTCTTCGAGTTCTGCGACGA < 41bp 1 0.236073767750329 1 0.234697699546814 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5644976 chr7:5644995 nonsynonymous SNV 0.999 1 40 hm5C_associated_SNPs_43596 0 0 1 0 1 FSCN1 chr7:5644903 3'AG 5644903 Downstream 93bp
chr18 74622083 74622083 1 + A G UCEC 74622068 + 74622048 74622088 41 CTCTGCGAGGGCACGTAGACCAGTTTGAAGAGCAGAGCCCT CTCTGCGAGGGCACGTAGACCAGTTTGAAGAGCAGGGCCCT < 41bp 1 0.334839351333108 1 0.371924072504044 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74622068 chr18:74622083 nonsynonymous SNV 0.020 0 36 hm5C_associated_SNPs_43597 0 0 1 0 2 ZNF236 chr18:74622024 3'AG 74622024 Downstream 60bp
chr18 74622083 74622083 1 + A G UCEC 74622068 + 74622048 74622088 41 CTCTGCGAGGGCACGTAGACCAGTTTGAAGAGCAGAGCCCT CTCTGCGAGGGCACGTAGACCAGTTTGAAGAGCAGGGCCCT < 41bp 1 0.334839351333108 1 0.371924072504044 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74622068 chr18:74622083 nonsynonymous SNV 0.020 0 36 hm5C_associated_SNPs_43597 0 0 1 0 2 ZNF236 chr18:74622125 5'GT 74622125 Upstream 43bp
chr14 21544577 21544577 1 + C T UCEC 21544565 + 21544545 21544585 41 CCGTCCTGCTGGACCTTCGTCAGGCACCTCCACTGCCTCCA CCGTCCTGCTGGACCTTCGTCAGGCACCTCCATTGCCTCCA < 41bp 1 0.668789777070558 1 0.887920558452606 experiment 0.662420445858883 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21544565 chr14:21544577 synonymous SNV . 0 33 hm5C_associated_SNPs_43598 0 0 1 0 2 ARHGEF40 chr14:21544519 3'AG 21544519 Downstream 59bp
chr14 21544577 21544577 1 + C T UCEC 21544565 + 21544545 21544585 41 CCGTCCTGCTGGACCTTCGTCAGGCACCTCCACTGCCTCCA CCGTCCTGCTGGACCTTCGTCAGGCACCTCCATTGCCTCCA < 41bp 1 0.668789777070558 1 0.887920558452606 experiment 0.662420445858883 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21544565 chr14:21544577 synonymous SNV . 0 33 hm5C_associated_SNPs_43598 0 0 1 0 2 ARHGEF40 chr14:21544615 5'GT 21544615 Upstream 39bp
chr1 27099098 27099098 1 + C T UCEC 27099103 + 27099083 27099123 41 TCCACACCACACAGTCAGATCCCCCCATTGCCAGGCATGAG TCCACACCACACAGTTAGATCCCCCCATTGCCAGGCATGAG < 41bp 1 0.0449640483731189 1 0.0292576551437378 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27099103 chr1:27099098 stopgain 1.000 1 16 hm5C_associated_SNPs_43600 0 0 1 0 1 ARID1A chr1:27099123 5'GT 27099123 Upstream 26bp
chr19 21281646 21281646 1 + G A UCEC 21281651 + 21281631 21281671 41 CTCTAAGCAAGACCCGATCACCAGTCTAGAGCAAGAAAAAG CTCTAAGCAAGACCCAATCACCAGTCTAGAGCAAGAAAAAG < 41bp 1 0.204846157492583 1 0.167950391769409 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21281651 chr19:21281646 synonymous SNV . 0 16 hm5C_associated_SNPs_43601 0 0 1 0 3 ZNF714 chr19:21281618 3'AG 21281618 Downstream 29bp
chr19 21281646 21281646 1 + G A UCEC 21281651 + 21281631 21281671 41 CTCTAAGCAAGACCCGATCACCAGTCTAGAGCAAGAAAAAG CTCTAAGCAAGACCCAATCACCAGTCTAGAGCAAGAAAAAG < 41bp 1 0.204846157492583 1 0.167950391769409 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21281651 chr19:21281646 synonymous SNV . 0 16 hm5C_associated_SNPs_43601 0 0 1 0 3 ZNF714 chr19:21281621 3'AG 21281621 Downstream 26bp
chr19 21281646 21281646 1 + G A UCEC 21281651 + 21281631 21281671 41 CTCTAAGCAAGACCCGATCACCAGTCTAGAGCAAGAAAAAG CTCTAAGCAAGACCCAATCACCAGTCTAGAGCAAGAAAAAG < 41bp 1 0.204846157492583 1 0.167950391769409 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21281651 chr19:21281646 synonymous SNV . 0 16 hm5C_associated_SNPs_43601 0 0 1 0 3 ZNF714 chr19:21281716 5'GT 21281716 Upstream 71bp
chr19 21281646 21281646 1 + G A UCEC 21281652 + 21281632 21281672 41 TCTAAGCAAGACCCGATCACCAGTCTAGAGCAAGAAAAAGA TCTAAGCAAGACCCAATCACCAGTCTAGAGCAAGAAAAAGA < 41bp 1 0.204307151777936 1 0.345235258340836 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21281652 chr19:21281646 synonymous SNV . 0 15 hm5C_associated_SNPs_43602 0 0 1 0 3 ZNF714 chr19:21281618 3'AG 21281618 Downstream 29bp
chr19 21281646 21281646 1 + G A UCEC 21281652 + 21281632 21281672 41 TCTAAGCAAGACCCGATCACCAGTCTAGAGCAAGAAAAAGA TCTAAGCAAGACCCAATCACCAGTCTAGAGCAAGAAAAAGA < 41bp 1 0.204307151777936 1 0.345235258340836 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21281652 chr19:21281646 synonymous SNV . 0 15 hm5C_associated_SNPs_43602 0 0 1 0 3 ZNF714 chr19:21281621 3'AG 21281621 Downstream 26bp
chr19 21281646 21281646 1 + G A UCEC 21281652 + 21281632 21281672 41 TCTAAGCAAGACCCGATCACCAGTCTAGAGCAAGAAAAAGA TCTAAGCAAGACCCAATCACCAGTCTAGAGCAAGAAAAAGA < 41bp 1 0.204307151777936 1 0.345235258340836 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21281652 chr19:21281646 synonymous SNV . 0 15 hm5C_associated_SNPs_43602 0 0 1 0 3 ZNF714 chr19:21281716 5'GT 21281716 Upstream 71bp
chr11 61491020 61491020 1 + G A UCEC 61491024 + 61491004 61491044 41 ACCAAGAGGAGGCAGCGTAACCTGCGGACCTACAACCTGCG ACCAAGAGGAGGCAGCATAACCTGCGGACCTACAACCTGCG < 41bp 1 0.121769768442737 1 0.194030344486237 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61491024 chr11:61491020 nonsynonymous SNV 0.995 4 17 hm5C_associated_SNPs_43604 0 0 0 0 1 DAGLA chr11:61491044 5'GT 61491044 Upstream 25bp
chr1 201970597 201970597 1 + A G UCEC 201970604 + 201970584 201970624 41 GGTGATCAGGATCAGTTTGACAGTTTTCTCAAGGTATAGTC GGTGATCAGGATCGGTTTGACAGTTTTCTCAAGGTATAGTC < 41bp 1 0.50299840335427 1 0.0585473775863647 experiment 0.994003193291461 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNPEP ENSG00000176393 CDS Human protein_coding chr1:201970604 chr1:201970597 nonsynonymous SNV 0.995 0 14 hm5C_associated_SNPs_43605 0 0 1 0 2 RNPEP chr1:201970504 3'AG 201970504 Downstream 94bp
chr1 201970597 201970597 1 + A G UCEC 201970604 + 201970584 201970624 41 GGTGATCAGGATCAGTTTGACAGTTTTCTCAAGGTATAGTC GGTGATCAGGATCGGTTTGACAGTTTTCTCAAGGTATAGTC < 41bp 1 0.50299840335427 1 0.0585473775863647 experiment 0.994003193291461 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNPEP ENSG00000176393 CDS Human protein_coding chr1:201970604 chr1:201970597 nonsynonymous SNV 0.995 0 14 hm5C_associated_SNPs_43605 0 0 1 0 2 RNPEP chr1:201970616 5'GT 201970616 Upstream 20bp
chr7 138944039 138944039 1 + T C UCEC 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TCGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG < 41bp 1 0.527479017416246 1 0.556599676609039 experiment 0.945041965167507 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944039 synonymous SNV . 0 2 hm5C_associated_SNPs_43609 0 0 1 0 2 UBN2 chr7:138944013 3'AG 138944013 Downstream 27bp
chr7 138944039 138944039 1 + T C UCEC 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TCGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG < 41bp 1 0.527479017416246 1 0.556599676609039 experiment 0.945041965167507 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944039 synonymous SNV . 0 2 hm5C_associated_SNPs_43609 0 0 1 0 2 UBN2 chr7:138944116 5'GT 138944116 Upstream 78bp
chr1 44433315 44433315 1 + C T UCEC 44433322 + 44433302 44433342 41 TCACACTGCTGTGCCGGGGTCTCCATGGCACAGATTACACA TCACACTGCTGTGTCGGGGTCTCCATGGCACAGATTACACA < 41bp 1 0.700006338336386 1 0.904475212097168 experiment 0.599987323327227 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control IPO13 ENSG00000117408 CDS Human protein_coding chr1:44433322 chr1:44433315 synonymous SNV . 0 14 hm5C_associated_SNPs_43611 0 0 1 0 1 IPO13 chr1:44433258 3'AG 44433258 Downstream 58bp
chr2 118579628 118579628 1 + C T UCEC 118579611 + 118579591 118579631 41 TCAACATCATTGTGGCCACACCAGGCCGTCTGCTGGACCAT TCAACATCATTGTGGCCACACCAGGCCGTCTGCTGGATCAT < 41bp 1 0.500318193631927 1 0.115370273590088 experiment 0.999363612736145 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579611 chr2:118579628 synonymous SNV . 0 38 hm5C_associated_SNPs_43614 0 0 1 0 1 DDX18 chr2:118579637 5'GT 118579637 Upstream 10bp
chr19 54606430 54606430 1 + G A UCEC 54606432 + 54606412 54606452 41 ACCCCTTCAGGAGTCGGCGCCTTCCTCAAGAATGCCTGGGA ACCCCTTCAGGAGTCGGCACCTTCCTCAAGAATGCCTGGGA < 41bp 1 0.144783298860693 1 0.049350768327713 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54606432 chr19:54606430 nonsynonymous SNV 0.798 0 19 hm5C_associated_SNPs_43615 0 0 1 0 2 NDUFA3 chr19:54606422 3'AG 54606422 Downstream 9bp
chr19 54606430 54606430 1 + G A UCEC 54606432 + 54606412 54606452 41 ACCCCTTCAGGAGTCGGCGCCTTCCTCAAGAATGCCTGGGA ACCCCTTCAGGAGTCGGCACCTTCCTCAAGAATGCCTGGGA < 41bp 1 0.144783298860693 1 0.049350768327713 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54606432 chr19:54606430 nonsynonymous SNV 0.798 0 19 hm5C_associated_SNPs_43615 0 0 1 0 2 NDUFA3 chr19:54606496 5'GT 54606496 Upstream 67bp
chr1 223943295 223943295 1 + C T UCEC 223943279 + 223943259 223943299 41 TGCACCTTCCTGGTGGGGCTCATTCAGAAGCACCGACGGCG TGCACCTTCCTGGTGGGGCTCATTCAGAAGCACCGATGGCG < 41bp 1 0.0622933732858686 1 0.0665687024593353 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943279 chr1:223943295 nonsynonymous SNV 1.000 5 37 hm5C_associated_SNPs_43616 0 0 1 0 1 CAPN2 chr1:223943351 5'GT 223943351 Upstream 57bp
chr1 223943295 223943295 1 + C T UCEC 223943292 + 223943272 223943312 41 TGGGGCTCATTCAGAAGCACCGACGGCGGCAGAGGAAGATG TGGGGCTCATTCAGAAGCACCGATGGCGGCAGAGGAAGATG < 41bp 1 0.415938616851884 1 0.194166362285614 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943292 chr1:223943295 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_43617 0 0 1 0 1 CAPN2 chr1:223943351 5'GT 223943351 Upstream 57bp
chr1 223943295 223943295 1 + C T UCEC 223943301 + 223943281 223943321 41 TTCAGAAGCACCGACGGCGGCAGAGGAAGATGGGCGAGGAC TTCAGAAGCACCGATGGCGGCAGAGGAAGATGGGCGAGGAC < 41bp 1 0.716103735103107 1 0.599407315254211 experiment 0.567792529793786 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943301 chr1:223943295 nonsynonymous SNV 1.000 5 15 hm5C_associated_SNPs_43618 0 0 1 0 1 CAPN2 chr1:223943351 5'GT 223943351 Upstream 57bp
chr16 30081513 30081513 1 + G A UCEC 30081505 + 30081485 30081525 41 TGGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACG TGGGGCTGCTGCCAGCGAGTCCCTCTTCATCTCTAACCACG < 41bp 1 0.0574239816337996 1 0.0372637510299683 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081505 chr16:30081513 nonsynonymous SNV 0.984 1 29 hm5C_associated_SNPs_43619 0 0 1 0 1 ALDOA chr16:30081438 3'AG 30081438 Downstream 76bp
chr16 30081513 30081513 1 + G A UCEC 30081506 + 30081486 30081526 41 GGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGC GGGGCTGCTGCCAGCGAGTCCCTCTTCATCTCTAACCACGC < 41bp 1 0.0533177172806366 1 0.0573436319828033 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081506 chr16:30081513 nonsynonymous SNV 0.984 1 28 hm5C_associated_SNPs_43620 0 0 1 0 1 ALDOA chr16:30081438 3'AG 30081438 Downstream 76bp
chr16 30081513 30081513 1 + G A UCEC 30081507 + 30081487 30081527 41 GGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGCC GGGCTGCTGCCAGCGAGTCCCTCTTCATCTCTAACCACGCC < 41bp 1 0.188143259712083 1 0.137648612260818 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081507 chr16:30081513 nonsynonymous SNV 0.984 1 27 hm5C_associated_SNPs_43621 0 0 1 0 1 ALDOA chr16:30081438 3'AG 30081438 Downstream 76bp
chr16 30081513 30081513 1 + G A UCEC 30081509 + 30081489 30081529 41 GCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGCCTA GCTGCTGCCAGCGAGTCCCTCTTCATCTCTAACCACGCCTA < 41bp 1 0.600948395342813 1 0.800184488296509 experiment 0.798103209314374 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081509 chr16:30081513 nonsynonymous SNV 0.984 1 25 hm5C_associated_SNPs_43622 0 0 1 0 1 ALDOA chr16:30081438 3'AG 30081438 Downstream 76bp
chr19 45762361 45762361 1 + G A UCEC 45762352 + 45762332 45762372 41 TCGCCTCCTGTCCCGAGGAGCAGCCCCACGTGGGCAACTAC TCGCCTCCTGTCCCGAGGAGCAGCCCCACATGGGCAACTAC < 41bp 1 0.200086171050914 1 0.6030313372612 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45762352 chr19:45762361 nonsynonymous SNV 0.991 3 30 hm5C_associated_SNPs_43623 0 0 1 0 1 MARK4 chr19:45762447 5'GT 45762447 Upstream 87bp
chr11 44639775 44639775 1 + C T UCEC 44639783 + 44639763 44639803 41 CTCATGAATCGCCCTGAGGTCACCTACCCCTGTTCCTGCGA CTCATGAATCGCTCTGAGGTCACCTACCCCTGTTCCTGCGA < 41bp 1 0.378468853508745 1 0.117589205503464 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD82 ENSG00000085117 CDS Human protein_coding chr11:44639783 chr11:44639775 nonsynonymous SNV 0.001 0 13 hm5C_associated_SNPs_43624 0 0 1 0 1 CD82 chr11:44639712 3'AG 44639712 Downstream 64bp
chr3 40499409 40499409 1 + G T UCEC 40499425 + 40499405 40499445 41 GGCCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAA GGCCTGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAA < 41bp 1 0.350756842213429 1 0.0524573922157288 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL14 ENSG00000188846 CDS Human protein_coding chr3:40499425 chr3:40499409 nonsynonymous SNV 0.999 3 5 hm5C_associated_SNPs_43625 0 0 1 0 1 RPL14 chr3:40499381 3'AG 40499381 Downstream 29bp
chr9 2186134 2186134 1 + G A UCEC 2186154 + 2186134 2186174 41 GAGTGCCCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGAGG AAGTGCCCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGAGG < 41bp 1 0.204685926841758 1 0.0793546736240387 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2186154 chr9:2186134 synonymous SNV . 0 1 hm5C_associated_SNPs_43627 0 0 1 0 1 SMARCA2 chr9:2186096 3'AG 2186096 Downstream 39bp
chr7 55240744 55240744 1 + G T UCEC 55240738 + 55240718 55240758 41 CCTCTTGCTGCTGGTGGTGGCCCTGGGGATCGGCCTCTTCA CCTCTTGCTGCTGGTGGTGGCCCTGGTGATCGGCCTCTTCA < 41bp 1 0.280832086317608 1 0.384992212057114 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55240738 chr7:55240744 nonsynonymous SNV 0.246 0 27 hm5C_associated_SNPs_43629 0 0 1 0 2 EGFR chr7:55240676 3'AG 55240676 Downstream 69bp
chr7 55240744 55240744 1 + G T UCEC 55240738 + 55240718 55240758 41 CCTCTTGCTGCTGGTGGTGGCCCTGGGGATCGGCCTCTTCA CCTCTTGCTGCTGGTGGTGGCCCTGGTGATCGGCCTCTTCA < 41bp 1 0.280832086317608 1 0.384992212057114 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55240738 chr7:55240744 nonsynonymous SNV 0.246 0 27 hm5C_associated_SNPs_43629 0 0 1 0 2 EGFR chr7:55240817 5'GT 55240817 Upstream 74bp
chr19 57796003 57796003 1 + G A UCEC 57795986 + 57795966 57796006 41 GTGGGGGCAGTTGGACGTGACCCAGAGGGCCTTGTACGTGG GTGGGGGCAGTTGGACGTGACCCAGAGGGCCTTGTACATGG < 41bp 1 0.683635834615036 1 0.110977917909622 experiment 0.632728330769927 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF460 ENSG00000197714 CDS Human protein_coding chr19:57795986 chr19:57796003 nonsynonymous SNV 0.936 1 38 hm5C_associated_SNPs_43630 0 0 1 0 2 ZNF460 chr19:57795919 3'AG 57795919 Downstream 85bp
chr19 57796003 57796003 1 + G A UCEC 57795986 + 57795966 57796006 41 GTGGGGGCAGTTGGACGTGACCCAGAGGGCCTTGTACGTGG GTGGGGGCAGTTGGACGTGACCCAGAGGGCCTTGTACATGG < 41bp 1 0.683635834615036 1 0.110977917909622 experiment 0.632728330769927 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF460 ENSG00000197714 CDS Human protein_coding chr19:57795986 chr19:57796003 nonsynonymous SNV 0.936 1 38 hm5C_associated_SNPs_43630 0 0 1 0 2 ZNF460 chr19:57796045 5'GT 57796045 Upstream 43bp
chr1 120286531 120286531 1 + G A UCEC 120286511 + 120286491 120286531 41 AGTTTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTG AGTTTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTA < 41bp 1 0.378419971094625 1 0.729426383972168 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286511 chr1:120286531 synonymous SNV . 0 41 hm5C_associated_SNPs_43632 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 23bp
chr1 120286531 120286531 1 + G A UCEC 120286513 + 120286493 120286533 41 TTTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTGCG TTTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTACG < 41bp 1 0.173638529214594 1 0.251030623912811 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286513 chr1:120286531 synonymous SNV . 0 39 hm5C_associated_SNPs_43633 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 23bp
chr1 120286531 120286531 1 + G A UCEC 120286514 + 120286494 120286534 41 TTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTGCGG TTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTACGG < 41bp 1 0.430939809660697 1 0.168971568346024 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286514 chr1:120286531 synonymous SNV . 0 38 hm5C_associated_SNPs_43634 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 23bp
chr1 120286531 120286531 1 + G A UCEC 120286518 + 120286498 120286538 41 TCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTGCGGCTGC TCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTACGGCTGC < 41bp 1 0.676395304179332 1 0.913830876350403 experiment 0.647209391641336 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286518 chr1:120286531 synonymous SNV . 0 34 hm5C_associated_SNPs_43635 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 23bp
chr1 120286531 120286531 1 + G A UCEC 120286535 + 120286515 120286555 41 TGGCAGAGGCAGGCGTGCGGCTGCTGTCCTACCAGACTTCA TGGCAGAGGCAGGCGTACGGCTGCTGTCCTACCAGACTTCA < 41bp 1 0.631073402661745 1 0.514018714427948 experiment 0.73785319467651 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286535 chr1:120286531 synonymous SNV . 0 17 hm5C_associated_SNPs_43636 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 23bp
chr1 120286531 120286531 1 + G A UCEC 120286542 + 120286522 120286562 41 GGCAGGCGTGCGGCTGCTGTCCTACCAGACTTCACTGGTGT GGCAGGCGTACGGCTGCTGTCCTACCAGACTTCACTGGTGT < 41bp 1 0.0664526101727658 1 0.190434247255325 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286542 chr1:120286531 synonymous SNV . 0 10 hm5C_associated_SNPs_43637 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 23bp
chr1 120286531 120286531 1 + G A UCEC 120286543 + 120286523 120286563 41 GCAGGCGTGCGGCTGCTGTCCTACCAGACTTCACTGGTGTC GCAGGCGTACGGCTGCTGTCCTACCAGACTTCACTGGTGTC < 41bp 1 0.268831553520533 1 0.111624002456665 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286543 chr1:120286531 synonymous SNV . 0 9 hm5C_associated_SNPs_43638 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 23bp
chr1 120286531 120286531 1 + G A UCEC 120286547 + 120286527 120286567 41 GCGTGCGGCTGCTGTCCTACCAGACTTCACTGGTGTCAGAT GCGTACGGCTGCTGTCCTACCAGACTTCACTGGTGTCAGAT < 41bp 1 0.550598158967972 1 0.631887555122375 experiment 0.898803682064057 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286547 chr1:120286531 synonymous SNV . 0 5 hm5C_associated_SNPs_43639 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 23bp
chr1 120286531 120286531 1 + G A UCEC 120286551 + 120286531 120286571 41 GCGGCTGCTGTCCTACCAGACTTCACTGGTGTCAGATGGGG ACGGCTGCTGTCCTACCAGACTTCACTGGTGTCAGATGGGG < 41bp 1 0.425666303077378 1 0.51078873872757 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286551 chr1:120286531 synonymous SNV . 0 1 hm5C_associated_SNPs_43640 0 0 1 0 1 PHGDH chr1:120286509 3'AG 120286509 Downstream 23bp
chr9 131893878 131893878 1 + G T UCEC 131893872 + 131893852 131893892 41 GTGCCTGAGGTGGCTGTTTACCTAAAGGAGTCAGTGGGGAA GTGCCTGAGGTGGCTGTTTACCTAAATGAGTCAGTGGGGAA < 41bp 1 0.439955819451615 1 0.451251327991486 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPA ENSG00000119383 CDS Human protein_coding chr9:131893872 chr9:131893878 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_43642 0 0 1 0 2 PTPA chr9:131893801 3'AG 131893801 Downstream 78bp
chr9 131893878 131893878 1 + G T UCEC 131893872 + 131893852 131893892 41 GTGCCTGAGGTGGCTGTTTACCTAAAGGAGTCAGTGGGGAA GTGCCTGAGGTGGCTGTTTACCTAAATGAGTCAGTGGGGAA < 41bp 1 0.439955819451615 1 0.451251327991486 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPA ENSG00000119383 CDS Human protein_coding chr9:131893872 chr9:131893878 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_43642 0 0 1 0 2 PTPA chr9:131893918 5'GT 131893918 Upstream 41bp
chr2 131801890 131801890 1 + G A UCEC 131801875 + 131801855 131801895 41 AGGCCAGCATCTGGCAGGACCTGCTCCGCCGCGACGTGTTG AGGCCAGCATCTGGCAGGACCTGCTCCGCCGCGACATGTTG < 41bp 1 0.157992927221186 1 0.0961700677871704 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF4 ENSG00000136002 CDS Human protein_coding chr2:131801875 chr2:131801890 nonsynonymous SNV 0.994 1 36 hm5C_associated_SNPs_43643 0 0 0 0 1 ARHGEF4 chr2:131801872 3'AG 131801872 Downstream 19bp
chrX 70516429 70516429 1 + T G UCEC 70516419 + 70516399 70516439 41 TTGTTCTTTCTTCCAGATTTCCTCGTCCTGTGACTGTGGAG TTGTTCTTTCTTCCAGATTTCCTCGTCCTGGGACTGTGGAG < 41bp 1 0.116631000270126 1 0.0549381375312805 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516419 chrX:70516429 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_43644 0 0 1 0 2 NONO chrX:70516415 3'AG 70516415 Downstream 15bp
chrX 70516429 70516429 1 + T G UCEC 70516419 + 70516399 70516439 41 TTGTTCTTTCTTCCAGATTTCCTCGTCCTGTGACTGTGGAG TTGTTCTTTCTTCCAGATTTCCTCGTCCTGGGACTGTGGAG < 41bp 1 0.116631000270126 1 0.0549381375312805 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516419 chrX:70516429 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_43644 0 0 1 0 2 NONO chrX:70516510 5'GT 70516510 Upstream 82bp
chrX 70516429 70516429 1 + T G UCEC 70516440 + 70516420 70516460 41 CTCGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT CTCGTCCTGGGACTGTGGAGCCCATGGACCAGTTAGATGAT < 41bp 1 0.115997845938364 1 0.146133720874786 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516440 chrX:70516429 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_43645 0 0 1 0 2 NONO chrX:70516415 3'AG 70516415 Downstream 15bp
chrX 70516429 70516429 1 + T G UCEC 70516440 + 70516420 70516460 41 CTCGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT CTCGTCCTGGGACTGTGGAGCCCATGGACCAGTTAGATGAT < 41bp 1 0.115997845938364 1 0.146133720874786 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516440 chrX:70516429 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_43645 0 0 1 0 2 NONO chrX:70516510 5'GT 70516510 Upstream 82bp
chr19 40718824 40718824 1 + G T UCEC 40718840 + 40718820 40718860 41 AGAAGGGACGAACGTGGGGGCCCAGCTCCACCCTGCAGAAG AGAATGGACGAACGTGGGGGCCCAGCTCCACCCTGCAGAAG < 41bp 1 0.0739726165210886 1 0.182797074317932 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718840 chr19:40718824 nonsynonymous SNV 0.810 4 5 hm5C_associated_SNPs_43646 0 0 1 0 1 MAP3K10 chr19:40718883 5'GT 40718883 Upstream 60bp
chr19 40718824 40718824 1 + G T UCEC 40718841 + 40718821 40718861 41 GAAGGGACGAACGTGGGGGCCCAGCTCCACCCTGCAGAAGG GAATGGACGAACGTGGGGGCCCAGCTCCACCCTGCAGAAGG < 41bp 1 0.0738908346477943 1 0.0414059162139893 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718841 chr19:40718824 nonsynonymous SNV 0.810 4 4 hm5C_associated_SNPs_43647 0 0 1 0 1 MAP3K10 chr19:40718883 5'GT 40718883 Upstream 60bp
chr19 40718824 40718824 1 + G T UCEC 40718842 + 40718822 40718862 41 AAGGGACGAACGTGGGGGCCCAGCTCCACCCTGCAGAAGGA AATGGACGAACGTGGGGGCCCAGCTCCACCCTGCAGAAGGA < 41bp 1 0.19564559802581 1 0.188491702079773 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718842 chr19:40718824 nonsynonymous SNV 0.810 4 3 hm5C_associated_SNPs_43648 0 0 1 0 1 MAP3K10 chr19:40718883 5'GT 40718883 Upstream 60bp
chr3 8579067 8579067 1 + G T UCEC 8579084 + 8579064 8579104 41 AAAGATCCCACTTTTGACACCATCACCTACGAGTGGGCTCC AAATATCCCACTTTTGACACCATCACCTACGAGTGGGCTCC < 41bp 1 0.280853675432646 1 0.173721134662628 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LMCD1 ENSG00000071282 CDS Human protein_coding chr3:8579084 chr3:8579067 nonsynonymous SNV 0.996 5 4 hm5C_associated_SNPs_43649 0 0 0 0 1 LMCD1 chr3:8579126 5'GT 8579126 Upstream 60bp
chr3 47447487 47447487 1 + G A UCEC 47447468 + 47447448 47447488 41 CCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGC CCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAAC < 41bp 1 0.0733231057400211 1 0.0214638411998749 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47447468 chr3:47447487 nonsynonymous SNV 0.937 3 40 hm5C_associated_SNPs_43650 0 0 1 0 3 PTPN23 chr3:47447405 3'AG 47447405 Downstream 83bp
chr3 47447487 47447487 1 + G A UCEC 47447468 + 47447448 47447488 41 CCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGC CCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAAC < 41bp 1 0.0733231057400211 1 0.0214638411998749 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47447468 chr3:47447487 nonsynonymous SNV 0.937 3 40 hm5C_associated_SNPs_43650 0 0 1 0 3 PTPN23 chr3:47447435 3'AG 47447435 Downstream 53bp
chr3 47447487 47447487 1 + G A UCEC 47447468 + 47447448 47447488 41 CCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGC CCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAAC < 41bp 1 0.0733231057400211 1 0.0214638411998749 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47447468 chr3:47447487 nonsynonymous SNV 0.937 3 40 hm5C_associated_SNPs_43650 0 0 1 0 3 PTPN23 chr3:47447536 5'GT 47447536 Upstream 50bp
chr9 95869975 95869975 1 + C A UCEC 95869992 + 95869972 95870012 41 CCGCCTGGTGCAGGACACGCCTTTCCTGACAGGCCATGGGC CCGACTGGTGCAGGACACGCCTTTCCTGACAGGCCATGGGC < 41bp 1 0.0548829530513539 1 0.0647945404052734 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARD19 ENSG00000165233 CDS Human protein_coding chr9:95869992 chr9:95869975 synonymous SNV . 0 4 hm5C_associated_SNPs_43654 0 0 1 0 1 CARD19 chr9:95869956 3'AG 95869956 Downstream 20bp
chr8 107754460 107754460 1 + C T UCEC 107754474 + 107754454 107754494 41 TTGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC TTGGTGTGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC < 41bp 1 0.0632397625413394 1 0.0742046236991882 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754474 chr8:107754460 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_43655 0 0 0 1 2 OXR1 chr8:107754450 3'AG 107754450 Downstream 11bp
chr8 107754460 107754460 1 + C T UCEC 107754474 + 107754454 107754494 41 TTGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC TTGGTGTGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC < 41bp 1 0.0632397625413394 1 0.0742046236991882 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754474 chr8:107754460 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_43655 0 0 0 1 2 OXR1 chr8:107754545 5'GT 107754545 Upstream 86bp
chr8 107754460 107754460 1 + C T UCEC 107754475 + 107754455 107754495 41 TGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT TGGTGTGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT < 41bp 1 0.161229795219191 1 0.092203289270401 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754475 chr8:107754460 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_43656 0 0 0 1 2 OXR1 chr8:107754450 3'AG 107754450 Downstream 11bp
chr8 107754460 107754460 1 + C T UCEC 107754475 + 107754455 107754495 41 TGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT TGGTGTGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT < 41bp 1 0.161229795219191 1 0.092203289270401 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754475 chr8:107754460 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_43656 0 0 0 1 2 OXR1 chr8:107754545 5'GT 107754545 Upstream 86bp
chr2 113950926 113950926 1 + C T UCEC 113950934 + 113950914 113950954 41 CACCATTGCAATCCGGGGATCTTCCCCTCAGTAGGTAGGGA CACCATTGCAATTCGGGGATCTTCCCCTCAGTAGGTAGGGA < 41bp 1 0.0433421548313538 1 0.131646811962128 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950934 chr2:113950926 nonsynonymous SNV 0.453 2 13 hm5C_associated_SNPs_43657 0 0 0 0 2 PSD4 chr2:113950835 3'AG 113950835 Downstream 92bp
chr2 113950926 113950926 1 + C T UCEC 113950934 + 113950914 113950954 41 CACCATTGCAATCCGGGGATCTTCCCCTCAGTAGGTAGGGA CACCATTGCAATTCGGGGATCTTCCCCTCAGTAGGTAGGGA < 41bp 1 0.0433421548313538 1 0.131646811962128 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950934 chr2:113950926 nonsynonymous SNV 0.453 2 13 hm5C_associated_SNPs_43657 0 0 0 0 2 PSD4 chr2:113950947 5'GT 113950947 Upstream 22bp
chr16 1394267 1394267 1 + G T UCEC 1394270 + 1394250 1394290 41 TTCCAACCCTCCTTTGAGATCTGCCCCTTCGAGTCGGAGCT TTCCAACCCTCCTTTGATATCTGCCCCTTCGAGTCGGAGCT < 41bp 1 0.244644895861208 1 0.248470336198807 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1394270 chr16:1394267 nonsynonymous SNV 0.942 0 18 hm5C_associated_SNPs_43658 0 0 0 0 2 BAIAP3 chr16:1394228 3'AG 1394228 Downstream 40bp
chr16 1394267 1394267 1 + G T UCEC 1394270 + 1394250 1394290 41 TTCCAACCCTCCTTTGAGATCTGCCCCTTCGAGTCGGAGCT TTCCAACCCTCCTTTGATATCTGCCCCTTCGAGTCGGAGCT < 41bp 1 0.244644895861208 1 0.248470336198807 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1394270 chr16:1394267 nonsynonymous SNV 0.942 0 18 hm5C_associated_SNPs_43658 0 0 0 0 2 BAIAP3 chr16:1394318 5'GT 1394318 Upstream 52bp
chr19 54942081 54942081 1 + C T UCEC 54942079 + 54942059 54942099 41 TGTGCCTCAGTTCCCTTCAGCGCAGGTCGGTGGGTGGGCGC TGTGCCTCAGTTCCCTTCAGCGTAGGTCGGTGGGTGGGCGC < 41bp 1 0.45763186421373 1 0.530285120010376 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54942079 chr19:54942081 stopgain 0.826 1 23 hm5C_associated_SNPs_43659 0 0 0 0 2 TTYH1 chr19:54941991 3'AG 54941991 Downstream 91bp
chr19 54942081 54942081 1 + C T UCEC 54942079 + 54942059 54942099 41 TGTGCCTCAGTTCCCTTCAGCGCAGGTCGGTGGGTGGGCGC TGTGCCTCAGTTCCCTTCAGCGTAGGTCGGTGGGTGGGCGC < 41bp 1 0.45763186421373 1 0.530285120010376 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54942079 chr19:54942081 stopgain 0.826 1 23 hm5C_associated_SNPs_43659 0 0 0 0 2 TTYH1 chr19:54942083 5'GT 54942083 Upstream 3bp
chr6 64288837 64288837 1 + A G UCEC 64288830 + 64288810 64288850 41 CTTTTGATGATGGTGCACCACCATCCAACCAGATTGTTGAT CTTTTGATGATGGTGCACCACCATCCAGCCAGATTGTTGAT < 41bp 1 0.0513089219451537 1 0.0156221985816956 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTP4A1 ENSG00000112245 CDS Human protein_coding chr6:64288830 chr6:64288837 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_43660 0 0 1 0 2 PTP4A1 chr6:64288803 3'AG 64288803 Downstream 35bp
chr6 64288837 64288837 1 + A G UCEC 64288830 + 64288810 64288850 41 CTTTTGATGATGGTGCACCACCATCCAACCAGATTGTTGAT CTTTTGATGATGGTGCACCACCATCCAGCCAGATTGTTGAT < 41bp 1 0.0513089219451537 1 0.0156221985816956 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTP4A1 ENSG00000112245 CDS Human protein_coding chr6:64288830 chr6:64288837 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_43660 0 0 1 0 2 PTP4A1 chr6:64288933 5'GT 64288933 Upstream 97bp
chr6 64288837 64288837 1 + A G UCEC 64288831 + 64288811 64288851 41 TTTTGATGATGGTGCACCACCATCCAACCAGATTGTTGATG TTTTGATGATGGTGCACCACCATCCAGCCAGATTGTTGATG < 41bp 1 0.133822398116116 1 0.0610883235931396 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTP4A1 ENSG00000112245 CDS Human protein_coding chr6:64288831 chr6:64288837 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_43661 0 0 1 0 2 PTP4A1 chr6:64288803 3'AG 64288803 Downstream 35bp
chr6 64288837 64288837 1 + A G UCEC 64288831 + 64288811 64288851 41 TTTTGATGATGGTGCACCACCATCCAACCAGATTGTTGATG TTTTGATGATGGTGCACCACCATCCAGCCAGATTGTTGATG < 41bp 1 0.133822398116116 1 0.0610883235931396 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTP4A1 ENSG00000112245 CDS Human protein_coding chr6:64288831 chr6:64288837 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_43661 0 0 1 0 2 PTP4A1 chr6:64288933 5'GT 64288933 Upstream 97bp
chr12 3149321 3149321 1 + C T UCEC 3149330 + 3149310 3149350 41 ACCGCATCCACCGGTCCCCGCTCTGTGAGTACATGATCAAC ACCGCATCCACTGGTCCCCGCTCTGTGAGTACATGATCAAC < 41bp 1 0.135215591067749 1 0.408866345882416 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3149330 chr12:3149321 nonsynonymous SNV 0.989 3 12 hm5C_associated_SNPs_43662 0 0 1 0 1 TEAD4 chr12:3149273 3'AG 3149273 Downstream 49bp
chr19 40477114 40477114 1 + A G UCEC 40477096 + 40477076 40477116 41 CATCCCAGGCCACACAGAGGCCGGCTTGGTCACTATGGAGG CATCCCAGGCCACACAGAGGCCGGCTTGGTCACTATGGGGG < 41bp 1 0.556876773555952 1 0.462213456630707 experiment 0.886246452888095 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40477096 chr19:40477114 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_43663 0 0 1 0 1 PSMC4 chr19:40477145 5'GT 40477145 Upstream 32bp
chr19 40477114 40477114 1 + A G UCEC 40477097 + 40477077 40477117 41 ATCCCAGGCCACACAGAGGCCGGCTTGGTCACTATGGAGGA ATCCCAGGCCACACAGAGGCCGGCTTGGTCACTATGGGGGA < 41bp 1 0.614067415320034 1 0.252048909664154 experiment 0.771865169359932 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40477097 chr19:40477114 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_43664 0 0 1 0 1 PSMC4 chr19:40477145 5'GT 40477145 Upstream 32bp
chr1 154248142 154248142 1 + G A UCEC 154248129 + 154248109 154248149 41 CCTCCAGCCCTGGATGATGCCTTTTCCATCCTGGACTTATT CCTCCAGCCCTGGATGATGCCTTTTCCATCCTGAACTTATT < 41bp 1 0.076892347097522 1 0.0463041067123413 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HAX1 ENSG00000143575 CDS Human protein_coding chr1:154248129 chr1:154248142 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_43665 0 0 1 0 1 HAX1 chr1:154248092 3'AG 154248092 Downstream 51bp
chr7 99751535 99751535 1 + G T UCEC 99751531 + 99751511 99751551 41 TGCTGGTGACGGTGTCAGGACAGAGGGTGTTTGTGGTGAAG TGCTGGTGACGGTGTCAGGACAGATGGTGTTTGTGGTGAAG < 41bp 1 0.475839030433979 1 0.347814917564392 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMTOR4 ENSG00000188186 CDS Human protein_coding chr7:99751531 chr7:99751535 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_43666 0 0 1 0 1 LAMTOR4 chr7:99751490 3'AG 99751490 Downstream 46bp
chr9 139234226 139234226 1 + C T UCEC 139234211 + 139234191 139234231 41 CCTGGGAAATGCCTACGTGTCCATGGGGCGCCCAGCGCAGG CCTGGGAAATGCCTACGTGTCCATGGGGCGCCCAGTGCAGG < 41bp 1 0.210080804181927 1 0.0500581860542297 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139234211 chr9:139234226 nonsynonymous SNV 0.979 1 36 hm5C_associated_SNPs_43668 0 0 0 0 1 GPSM1 chr9:139234272 5'GT 139234272 Upstream 47bp
chr9 139234226 139234226 1 + C T UCEC 139234212 + 139234192 139234232 41 CTGGGAAATGCCTACGTGTCCATGGGGCGCCCAGCGCAGGC CTGGGAAATGCCTACGTGTCCATGGGGCGCCCAGTGCAGGC < 41bp 1 0.688507134295463 1 0.329676806926727 experiment 0.622985731409075 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139234212 chr9:139234226 nonsynonymous SNV 0.979 1 35 hm5C_associated_SNPs_43669 0 0 0 0 1 GPSM1 chr9:139234272 5'GT 139234272 Upstream 47bp
chr6 44219833 44219833 1 + C T UCEC 44219814 + 44219794 44219834 41 CTTCGAGGTGGTATATATGACCGAGCCCATTGACGAGTACT CTTCGAGGTGGTATATATGACCGAGCCCATTGACGAGTATT < 41bp 1 0.374475283720128 1 0.153904289007187 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219814 chr6:44219833 synonymous SNV . 0 40 hm5C_associated_SNPs_43670 0 0 1 0 1 HSP90AB1 chr6:44219736 3'AG 44219736 Downstream 98bp
chr6 44219833 44219833 1 + C T UCEC 44219827 + 44219807 44219847 41 TATATGACCGAGCCCATTGACGAGTACTGTGTGCAGCAGCT TATATGACCGAGCCCATTGACGAGTATTGTGTGCAGCAGCT < 41bp 1 0.723400189795368 1 0.338290870189667 experiment 0.553199620409264 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219827 chr6:44219833 synonymous SNV . 0 27 hm5C_associated_SNPs_43671 0 0 1 0 1 HSP90AB1 chr6:44219736 3'AG 44219736 Downstream 98bp
chr6 44219833 44219833 1 + C T UCEC 44219840 + 44219820 44219860 41 CCATTGACGAGTACTGTGTGCAGCAGCTCAAGGAATTTGAT CCATTGACGAGTATTGTGTGCAGCAGCTCAAGGAATTTGAT < 41bp 1 0.639698562583929 1 0.328569531440735 experiment 0.720602874832143 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219840 chr6:44219833 synonymous SNV . 0 14 hm5C_associated_SNPs_43672 0 0 1 0 1 HSP90AB1 chr6:44219736 3'AG 44219736 Downstream 98bp
chr6 44219833 44219833 1 + C T UCEC 44219846 + 44219826 44219866 41 ACGAGTACTGTGTGCAGCAGCTCAAGGAATTTGATGGGAAG ACGAGTATTGTGTGCAGCAGCTCAAGGAATTTGATGGGAAG < 41bp 1 0.783827533776221 1 0.424503415822983 experiment 0.432344932447557 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219846 chr6:44219833 synonymous SNV . 0 8 hm5C_associated_SNPs_43673 0 0 1 0 1 HSP90AB1 chr6:44219736 3'AG 44219736 Downstream 98bp
chr17 35346649 35346649 1 + G A UCEC 35346663 + 35346643 35346683 41 TCTATCGAGTTCTTGGCAAACCTGAGCCAGCAGCTCAGCCT TCTATCAAGTTCTTGGCAAACCTGAGCCAGCAGCTCAGCCT < 41bp 1 0.643172320718985 1 0.0609728395938873 experiment 0.713655358562029 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AATF ENSG00000108270 CDS Human other chr17:35346663 chr17:35346649 nonsynonymous SNV 0.997 1 7 hm5C_associated_SNPs_43674 0 0 1 1 1 AATF chr17:35346710 5'GT 35346710 Upstream 62bp
chr17 43323034 43323034 1 + G T UCEC 43323037 + 43323017 43323057 41 GTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCCCAGG GTGGAGTACTTCGGAGATAACCCCAAGACCACATCCCCAGG < 41bp 1 0.599772598618448 1 0.385723382234573 experiment 0.800454802763104 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FMNL1 ENSG00000184922 CDS Human antisense chr17:43323037 chr17:43323034 nonsynonymous SNV 0.999 3 18 hm5C_associated_SNPs_43675 0 0 0 0 3 FMNL1 chr17:43322986 3'AG 43322986 Downstream 49bp
chr17 43323034 43323034 1 + G T UCEC 43323037 + 43323017 43323057 41 GTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCCCAGG GTGGAGTACTTCGGAGATAACCCCAAGACCACATCCCCAGG < 41bp 1 0.599772598618448 1 0.385723382234573 experiment 0.800454802763104 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43323037 chr17:43323034 nonsynonymous SNV 0.999 3 18 hm5C_associated_SNPs_43675 0 0 0 0 3 FMNL1 chr17:43322999 3'AG 43322999 Downstream 36bp
chr17 43323034 43323034 1 + G T UCEC 43323037 + 43323017 43323057 41 GTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCCCAGG GTGGAGTACTTCGGAGATAACCCCAAGACCACATCCCCAGG < 41bp 1 0.599772598618448 1 0.385723382234573 experiment 0.800454802763104 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43323037 chr17:43323034 nonsynonymous SNV 0.999 3 18 hm5C_associated_SNPs_43675 0 0 0 0 3 FMNL1 chr17:43323100 5'GT 43323100 Upstream 67bp
chr1 116946553 116946553 1 + T C UCEC 116946536 + 116946516 116946556 41 TGGTTCTGTGCCTTCCCCTACTCTCTTCTCATCTTCGTATA TGGTTCTGTGCCTTCCCCTACTCTCTTCTCATCTTCGCATA < 41bp 1 0.151625601506318 1 0.0622618198394775 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116946536 chr1:116946553 nonsynonymous SNV 0.975 3 38 hm5C_associated_SNPs_43677 0 0 1 0 1 ATP1A1 chr1:116946506 3'AG 116946506 Downstream 48bp
chr17 40817774 40817774 1 + G A UCEC 40817780 + 40817760 40817800 41 TCATCGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC TCATCGGCCTCATCACCTCGCTCATTCCCACCCCACGGCTC < 41bp 1 0.345634287089294 1 0.03245609998703 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817780 chr17:40817774 nonsynonymous SNV 0.999 4 15 hm5C_associated_SNPs_43679 0 0 0 0 2 TUBG2 chr17:40817696 3'AG 40817696 Downstream 79bp
chr17 40817774 40817774 1 + G A UCEC 40817780 + 40817760 40817800 41 TCATCGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC TCATCGGCCTCATCACCTCGCTCATTCCCACCCCACGGCTC < 41bp 1 0.345634287089294 1 0.03245609998703 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817780 chr17:40817774 nonsynonymous SNV 0.999 4 15 hm5C_associated_SNPs_43679 0 0 0 0 2 TUBG2 chr17:40817845 5'GT 40817845 Upstream 72bp
chr19 36219692 36219692 1 + C T UCEC 36219685 + 36219665 36219705 41 CTGTCCACAGCGGAGTCCTTCCCAATGCGGTGTTGCCCCCA CTGTCCACAGCGGAGTCCTTCCCAATGTGGTGTTGCCCCCA < 41bp 1 0.227229676571153 1 0.368371963500977 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36219685 chr19:36219692 nonsynonymous SNV 0.996 4 28 hm5C_associated_SNPs_43680 0 0 1 0 2 KMT2B chr19:36219675 3'AG 36219675 Downstream 18bp
chr19 36219692 36219692 1 + C T UCEC 36219685 + 36219665 36219705 41 CTGTCCACAGCGGAGTCCTTCCCAATGCGGTGTTGCCCCCA CTGTCCACAGCGGAGTCCTTCCCAATGTGGTGTTGCCCCCA < 41bp 1 0.227229676571153 1 0.368371963500977 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36219685 chr19:36219692 nonsynonymous SNV 0.996 4 28 hm5C_associated_SNPs_43680 0 0 1 0 2 KMT2B chr19:36219790 5'GT 36219790 Upstream 99bp
chr21 47983778 47983778 1 + C T UCEC 47983797 + 47983777 47983817 41 CCCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG CTCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG < 41bp 1 0.315049458703213 1 0.307493925094604 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47983797 chr21:47983778 nonsynonymous SNV 0.724 4 2 hm5C_associated_SNPs_43681 0 0 1 0 2 DIP2A chr21:47983771 3'AG 47983771 Downstream 8bp
chr21 47983778 47983778 1 + C T UCEC 47983797 + 47983777 47983817 41 CCCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG CTCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG < 41bp 1 0.315049458703213 1 0.307493925094604 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47983797 chr21:47983778 nonsynonymous SNV 0.724 4 2 hm5C_associated_SNPs_43681 0 0 1 0 2 DIP2A chr21:47983845 5'GT 47983845 Upstream 68bp
chr9 140110210 140110210 1 + C T UCEC 140110226 + 140110206 140110246 41 GTAGCCCCCTTCCGAGCAGCCATCCAGGAGCGTGTGGCCCA GTAGTCCCCTTCCGAGCAGCCATCCAGGAGCGTGTGGCCCA < 41bp 1 0.129832011715844 1 0.0632002055644989 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110226 chr9:140110210 nonsynonymous SNV 0.931 5 5 hm5C_associated_SNPs_43682 0 0 1 0 2 NDOR1 chr9:140110111 3'AG 140110111 Downstream 100bp
chr9 140110210 140110210 1 + C T UCEC 140110226 + 140110206 140110246 41 GTAGCCCCCTTCCGAGCAGCCATCCAGGAGCGTGTGGCCCA GTAGTCCCCTTCCGAGCAGCCATCCAGGAGCGTGTGGCCCA < 41bp 1 0.129832011715844 1 0.0632002055644989 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110226 chr9:140110210 nonsynonymous SNV 0.931 5 5 hm5C_associated_SNPs_43682 0 0 1 0 2 NDOR1 chr9:140110257 5'GT 140110257 Upstream 48bp
chr1 214794197 214794197 1 + C T UCEC 214794185 + 214794165 214794205 41 TGGGGAACAAGAGGTGACTCCAAGTCGATCAACTTTGCAAA TGGGGAACAAGAGGTGACTCCAAGTCGATCAATTTTGCAAA < 41bp 1 0.315136344664647 1 0.216362833976746 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214794185 chr1:214794197 nonsynonymous SNV 0.006 0 33 hm5C_associated_SNPs_43683 0 0 1 0 1 CENPF chr1:214794289 5'GT 214794289 Upstream 93bp
chr1 214794197 214794197 1 + C T UCEC 214794190 + 214794170 214794210 41 AACAAGAGGTGACTCCAAGTCGATCAACTTTGCAAATAGGG AACAAGAGGTGACTCCAAGTCGATCAATTTTGCAAATAGGG < 41bp 1 0.0804237333365041 1 0.247078567743301 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214794190 chr1:214794197 nonsynonymous SNV 0.006 0 28 hm5C_associated_SNPs_43684 0 0 1 0 1 CENPF chr1:214794289 5'GT 214794289 Upstream 93bp
chr19 8503332 8503332 1 + C T UCEC 8503319 + 8503299 8503339 41 TACTCCGAGTGGAGAAAGACCAACCAGAAAGTTCGCCTGAA TACTCCGAGTGGAGAAAGACCAACCAGAAAGTTTGCCTGAA < 41bp 1 0.426386917566668 1 0.121750026941299 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8503319 chr19:8503332 nonsynonymous SNV 0.989 2 34 hm5C_associated_SNPs_43685 0 0 0 0 1 MARCH2 chr19:8503272 3'AG 8503272 Downstream 61bp
chr2 204081998 204081998 1 + G A UCEC 204082013 + 204081993 204082033 41 TTCTCGAAAATTTTGGGGATCGAGCAAGCGGCTCAGCCAGA TTCTCAAAAATTTTGGGGATCGAGCAAGCGGCTCAGCCAGA < 41bp 1 0.214091683087734 1 0.378469556570053 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204082013 chr2:204081998 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_43689 0 0 1 0 1 NBEAL1 chr2:204081976 3'AG 204081976 Downstream 23bp
chr9 135919195 135919195 1 + C A UCEC 135919215 + 135919195 135919235 41 CTCCGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC ATCCGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC < 41bp 1 0.0504127556075652 1 0.0276399552822113 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919215 chr9:135919195 nonsynonymous SNV 0.717 0 1 hm5C_associated_SNPs_43690 0 0 1 0 1 GTF3C5 chr9:135919115 3'AG 135919115 Downstream 81bp
chr2 29159805 29159805 1 + A T UCEC 29159809 + 29159789 29159829 41 TTACAAAGAGGTTACAAGGACATCCTAATAGGTAAGATTAA TTACAAAGAGGTTACATGGACATCCTAATAGGTAAGATTAA < 41bp 1 0.109685681164359 1 0.1131551861763 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR43 ENSG00000163811 CDS Human protein_coding chr2:29159809 chr2:29159805 nonsynonymous SNV 0.959 1 17 hm5C_associated_SNPs_43691 0 0 1 0 2 WDR43 chr2:29159788 3'AG 29159788 Downstream 18bp
chr2 29159805 29159805 1 + A T UCEC 29159809 + 29159789 29159829 41 TTACAAAGAGGTTACAAGGACATCCTAATAGGTAAGATTAA TTACAAAGAGGTTACATGGACATCCTAATAGGTAAGATTAA < 41bp 1 0.109685681164359 1 0.1131551861763 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR43 ENSG00000163811 CDS Human protein_coding chr2:29159809 chr2:29159805 nonsynonymous SNV 0.959 1 17 hm5C_associated_SNPs_43691 0 0 1 0 2 WDR43 chr2:29159819 5'GT 29159819 Upstream 15bp
chr17 79663480 79663480 1 + G A UCEC 79663489 + 79663469 79663509 41 GGAGAAGCTTCGCCGGGCAGCCGAGGAGGCAGAGCGCCAGC GGAGAAGCTTCACCGGGCAGCCGAGGAGGCAGAGCGCCAGC < 41bp 1 0.588888522076325 1 0.74053555727005 experiment 0.82222295584735 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79663489 chr17:79663480 nonsynonymous SNV 0.995 3 12 hm5C_associated_SNPs_43692 0 0 1 0 1 HGS chr17:79663559 5'GT 79663559 Upstream 80bp
chr16 675504 675504 1 + G A UCEC 675485 + 675465 675505 41 TGGTCCTTTGACGGCATCGACCGCTGGATCAAGGAGATCGA TGGTCCTTTGACGGCATCGACCGCTGGATCAAGGAGATCAA < 41bp 1 0.202222928159193 1 0.114881217479706 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675485 chr16:675504 nonsynonymous SNV 0.942 1 40 hm5C_associated_SNPs_43694 0 0 1 0 2 RAB40C chr16:675432 3'AG 675432 Downstream 73bp
chr16 675504 675504 1 + G A UCEC 675485 + 675465 675505 41 TGGTCCTTTGACGGCATCGACCGCTGGATCAAGGAGATCGA TGGTCCTTTGACGGCATCGACCGCTGGATCAAGGAGATCAA < 41bp 1 0.202222928159193 1 0.114881217479706 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675485 chr16:675504 nonsynonymous SNV 0.942 1 40 hm5C_associated_SNPs_43694 0 0 1 0 2 RAB40C chr16:675509 5'GT 675509 Upstream 6bp
chr2 175268900 175268900 1 + G T UCEC 175268914 + 175268894 175268934 41 ACATGAGAAACTATGCTAAGCGGAAAGGTTGGTGGGATGGT ACATGATAAACTATGCTAAGCGGAAAGGTTGGTGGGATGGT < 41bp 1 0.738976641709966 1 0.158212780952454 experiment 0.522046716580067 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SCRN3 ENSG00000144306 CDS Human protein_coding chr2:175268914 chr2:175268900 nonsynonymous SNV 0.984 2 7 hm5C_associated_SNPs_43695 0 0 0 0 1 SCRN3 chr2:175268831 3'AG 175268831 Downstream 70bp
chr14 102445743 102445743 1 + G A UCEC 102445731 + 102445711 102445751 41 CAGCTCCGGGTCCTTACACTCAGTGAAGACTCGCCCTACGA CAGCTCCGGGTCCTTACACTCAGTGAAGACTCACCCTACGA < 41bp 1 0.21383364348766 1 0.796578407287598 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102445731 chr14:102445743 synonymous SNV . 0 33 hm5C_associated_SNPs_43696 4 0 1 0 2 DYNC1H1 chr14:102445656 3'AG 102445656 Downstream 88bp
chr14 102445743 102445743 1 + G A UCEC 102445731 + 102445711 102445751 41 CAGCTCCGGGTCCTTACACTCAGTGAAGACTCGCCCTACGA CAGCTCCGGGTCCTTACACTCAGTGAAGACTCACCCTACGA < 41bp 1 0.21383364348766 1 0.796578407287598 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102445731 chr14:102445743 synonymous SNV . 0 33 hm5C_associated_SNPs_43696 4 0 1 0 2 DYNC1H1 chr14:102445829 5'GT 102445829 Upstream 87bp
chr12 98941420 98941420 1 + G T UCEC 98941402 + 98941382 98941422 41 GCAGGCCGGCCATTAGAACTCAGTGATTTCAGGATGGAGGA GCAGGCCGGCCATTAGAACTCAGTGATTTCAGGATGGATGA < 41bp 1 0.734068476975753 1 0.333775401115417 experiment 0.531863046048493 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMPO ENSG00000120802 CDS Human protein_coding chr12:98941402 chr12:98941420 nonsynonymous SNV 0.872 0 39 hm5C_associated_SNPs_43697 0 0 1 0 1 TMPO chr12:98941351 3'AG 98941351 Downstream 70bp
chr16 89645276 89645276 1 + G A UCEC 89645265 + 89645245 89645285 41 CTGGGTTACGGCCTCCACAGCCAGCCCAAAAGTGGCTTCTG CTGGGTTACGGCCTCCACAGCCAGCCCAAAAATGGCTTCTG < 41bp 1 0.0792298250754846 1 0.799322068691254 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89645265 chr16:89645276 synonymous SNV . 0 32 hm5C_associated_SNPs_43698 0 0 1 0 1 CPNE7 chr16:89645265 3'AG 89645265 Downstream 12bp
chr8 107752678 107752678 1 + T C UCEC 107752684 + 107752664 107752704 41 CGAACAATGACAGGTTTAGACACCCCAGTGCTGATGGTGAT CGAACAATGACAGGCTTAGACACCCCAGTGCTGATGGTGAT < 41bp 1 0.374141124724945 1 0.268074572086334 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107752684 chr8:107752678 synonymous SNV . 0 15 hm5C_associated_SNPs_43700 0 0 0 0 1 OXR1 chr8:107752723 5'GT 107752723 Upstream 46bp
chr22 32188025 32188025 1 + A G UCEC 32188034 + 32188014 32188054 41 CTTAGGAGAAGAACTGTAGTCATGAAGTGACAGTGGTCCTG CTTAGGAGAAGGACTGTAGTCATGAAGTGACAGTGGTCCTG < 41bp 1 0.65577080870555 1 0.255634337663651 experiment 0.6884583825889 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32188034 chr22:32188025 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_43702 0 0 1 1 2 DEPDC5 chr22:32188019 3'AG 32188019 Downstream 7bp
chr22 32188025 32188025 1 + A G UCEC 32188034 + 32188014 32188054 41 CTTAGGAGAAGAACTGTAGTCATGAAGTGACAGTGGTCCTG CTTAGGAGAAGGACTGTAGTCATGAAGTGACAGTGGTCCTG < 41bp 1 0.65577080870555 1 0.255634337663651 experiment 0.6884583825889 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32188034 chr22:32188025 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_43702 0 0 1 1 2 DEPDC5 chr22:32188088 5'GT 32188088 Upstream 64bp
chr4 3205791 3205791 1 + G T UCEC 3205778 + 3205758 3205798 41 GTTACTTAGTCCCCAGATGTCTGGAGAAGAGGAGGATTCTG GTTACTTAGTCCCCAGATGTCTGGAGAAGAGGATGATTCTG < 41bp 1 0.68659840664348 1 0.91582179069519 experiment 0.626803186713041 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3205778 chr4:3205791 nonsynonymous SNV 0.572 0 34 hm5C_associated_SNPs_43703 0 0 1 0 2 HTT chr4:3205734 3'AG 3205734 Downstream 58bp
chr4 3205791 3205791 1 + G T UCEC 3205778 + 3205758 3205798 41 GTTACTTAGTCCCCAGATGTCTGGAGAAGAGGAGGATTCTG GTTACTTAGTCCCCAGATGTCTGGAGAAGAGGATGATTCTG < 41bp 1 0.68659840664348 1 0.91582179069519 experiment 0.626803186713041 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3205778 chr4:3205791 nonsynonymous SNV 0.572 0 34 hm5C_associated_SNPs_43703 0 0 1 0 2 HTT chr4:3205875 5'GT 3205875 Upstream 85bp
chr3 142741794 142741794 1 + C T UCEC 142741800 + 142741780 142741820 41 TATGATGGAACATACGCTTCCCCCACCTCCATCCGGACTGC TATGATGGAACATATGCTTCCCCCACCTCCATCCGGACTGC < 41bp 1 0.556946868226424 1 0.0591742694377899 experiment 0.886106263547152 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control U2SURP ENSG00000163714 CDS Human protein_coding chr3:142741800 chr3:142741794 nonsynonymous SNV 0.994 3 15 hm5C_associated_SNPs_43704 0 0 1 0 1 U2SURP chr3:142741695 3'AG 142741695 Downstream 100bp
chr20 35862439 35862439 1 + C T UCEC 35862428 + 35862408 35862448 41 CTCCCCATCATTCAGTGGATCCGGATTGGTGCCAATGTCTC CTCCCCATCATTCAGTGGATCCGGATTGGTGTCAATGTCTC < 41bp 1 0.518615637742447 1 0.323157429695129 experiment 0.962768724515105 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35862428 chr20:35862439 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_43705 0 0 1 0 2 RPN2 chr20:35862423 3'AG 35862423 Downstream 17bp
chr20 35862439 35862439 1 + C T UCEC 35862428 + 35862408 35862448 41 CTCCCCATCATTCAGTGGATCCGGATTGGTGCCAATGTCTC CTCCCCATCATTCAGTGGATCCGGATTGGTGTCAATGTCTC < 41bp 1 0.518615637742447 1 0.323157429695129 experiment 0.962768724515105 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35862428 chr20:35862439 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_43705 0 0 1 0 2 RPN2 chr20:35862498 5'GT 35862498 Upstream 60bp
chr19 56172454 56172454 1 + G A UCEC 56172435 + 56172415 56172455 41 ATTCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGG ATTCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACAG < 41bp 1 0.628243054582334 1 0.572168350219727 experiment 0.743513890835332 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172435 chr19:56172454 nonsynonymous SNV 0.984 0 40 hm5C_associated_SNPs_43706 0 0 1 0 1 U2AF2 chr19:56172404 3'AG 56172404 Downstream 51bp
chr19 56172454 56172454 1 + G A UCEC 56172437 + 56172417 56172457 41 TCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGGTC TCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACAGTC < 41bp 1 0.166328606095243 1 0.121466904878616 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172437 chr19:56172454 nonsynonymous SNV 0.984 0 38 hm5C_associated_SNPs_43707 0 0 1 0 1 U2AF2 chr19:56172404 3'AG 56172404 Downstream 51bp
chr19 56172454 56172454 1 + G A UCEC 56172438 + 56172418 56172458 41 CCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGGTCT CCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACAGTCT < 41bp 1 0.680514245775211 1 0.531381905078888 experiment 0.638971508449578 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172438 chr19:56172454 nonsynonymous SNV 0.984 0 37 hm5C_associated_SNPs_43708 0 0 1 0 1 U2AF2 chr19:56172404 3'AG 56172404 Downstream 51bp
chr1 46739826 46739826 1 + C A UCEC 46739819 + 46739799 46739839 41 TCCCCCTTCAGGTACTTATACGTCCGCCTGGATGGCACGAT TCCCCCTTCAGGTACTTATACGTCCGCATGGATGGCACGAT < 41bp 1 0.153945517255107 1 0.0860338509082794 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739819 chr1:46739826 nonsynonymous SNV 0.962 4 28 hm5C_associated_SNPs_43709 0 0 1 0 2 RAD54L chr1:46739810 3'AG 46739810 Downstream 17bp
chr1 46739826 46739826 1 + C A UCEC 46739819 + 46739799 46739839 41 TCCCCCTTCAGGTACTTATACGTCCGCCTGGATGGCACGAT TCCCCCTTCAGGTACTTATACGTCCGCATGGATGGCACGAT < 41bp 1 0.153945517255107 1 0.0860338509082794 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739819 chr1:46739826 nonsynonymous SNV 0.962 4 28 hm5C_associated_SNPs_43709 0 0 1 0 2 RAD54L chr1:46739888 5'GT 46739888 Upstream 63bp
chr9 127055283 127055283 1 + A T UCEC 127055289 + 127055269 127055309 41 AGCAGAGCCTGCCAAGGCCTCGAGGTGAGAGCAAGATCATT AGCAGAGCCTGCCATGGCCTCGAGGTGAGAGCAAGATCATT < 41bp 1 0.617157948683065 1 0.938111186027527 experiment 0.765684102633871 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NEK6 ENSG00000119408 CDS Human protein_coding chr9:127055289 chr9:127055283 nonsynonymous SNV 0.410 1 15 hm5C_associated_SNPs_43717 0 0 0 0 1 NEK6 chr9:127055292 5'GT 127055292 Upstream 10bp
chr2 152273370 152273370 1 + C T UCEC 152273359 + 152273339 152273379 41 TCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGC TCATTAGAAATACTGTTTAACAAAGGAGAGATGCATTCTGC < 41bp 1 0.321594130655302 1 0.714677691459656 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RIF1 ENSG00000080345 CDS Human protein_coding chr2:152273359 chr2:152273370 nonsynonymous SNV 0.861 0 32 hm5C_associated_SNPs_43719 0 0 1 0 2 RIF1 chr2:152273321 3'AG 152273321 Downstream 50bp
chr2 152273370 152273370 1 + C T UCEC 152273359 + 152273339 152273379 41 TCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGC TCATTAGAAATACTGTTTAACAAAGGAGAGATGCATTCTGC < 41bp 1 0.321594130655302 1 0.714677691459656 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RIF1 ENSG00000080345 CDS Human protein_coding chr2:152273359 chr2:152273370 nonsynonymous SNV 0.861 0 32 hm5C_associated_SNPs_43719 0 0 1 0 2 RIF1 chr2:152273415 5'GT 152273415 Upstream 46bp
chr3 183898713 183898713 1 + G A UCEC 183898730 + 183898710 183898750 41 ATCGTCGGAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTG ATCATCGGAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTG < 41bp 1 0.765871620773876 1 0.734839558601379 experiment 0.468256758452248 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183898730 chr3:183898713 nonsynonymous SNV 0.996 3 4 hm5C_associated_SNPs_43720 0 0 1 0 2 AP2M1 chr3:183898637 3'AG 183898637 Downstream 77bp
chr3 183898713 183898713 1 + G A UCEC 183898730 + 183898710 183898750 41 ATCGTCGGAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTG ATCATCGGAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTG < 41bp 1 0.765871620773876 1 0.734839558601379 experiment 0.468256758452248 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183898730 chr3:183898713 nonsynonymous SNV 0.996 3 4 hm5C_associated_SNPs_43720 0 0 1 0 2 AP2M1 chr3:183898772 5'GT 183898772 Upstream 60bp
chr12 31244689 31244689 1 + G A UCEC 31244687 + 31244667 31244707 41 CTATCAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGG CTATCAGATGCTGCTGCATGCGACCACTCGGCAGGCCGCGG < 41bp 1 0.414623927991913 1 0.145087242126465 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244687 chr12:31244689 nonsynonymous SNV 0.206 1 23 hm5C_associated_SNPs_43721 0 0 1 0 1 DDX11 chr12:31244653 3'AG 31244653 Downstream 37bp
chr12 31244689 31244689 1 + G A UCEC 31244691 + 31244671 31244711 41 CAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGGGCAT CAGATGCTGCTGCATGCGACCACTCGGCAGGCCGCGGGCAT < 41bp 1 0.295690243568437 1 0.0660594999790192 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244691 chr12:31244689 nonsynonymous SNV 0.206 1 19 hm5C_associated_SNPs_43722 0 0 1 0 1 DDX11 chr12:31244653 3'AG 31244653 Downstream 37bp
chr20 30157017 30157017 1 + A T UCEC 30157025 + 30157005 30157045 41 GAGAAGAAAGAGAAATGATGCAGCTGGTGCCCGAGCCTCTC GAGAAGAAAGAGTAATGATGCAGCTGGTGCCCGAGCCTCTC < 41bp 1 0.705767819130014 1 0.47791850566864 experiment 0.588464361739971 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HM13 ENSG00000101294 CDS Human protein_coding chr20:30157025 chr20:30157017 stopgain 0.733 0 13 hm5C_associated_SNPs_43723 0 0 1 1 1 HM13 chr20:30156923 3'AG 30156923 Downstream 95bp
chr15 64418415 64418415 1 + C T UCEC 64418395 + 64418375 64418415 41 AGAATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTC AGAATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTT < 41bp 1 0.0886578915287154 1 0.252354979515076 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418395 chr15:64418415 synonymous SNV . 0 41 hm5C_associated_SNPs_43726 0 0 1 0 1 SNX1 chr15:64418419 5'GT 64418419 Upstream 5bp
chr15 64418415 64418415 1 + C T UCEC 64418396 + 64418376 64418416 41 GAATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTCA GAATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTTA < 41bp 1 0.216041904667792 1 0.33225804567337 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418396 chr15:64418415 synonymous SNV . 0 40 hm5C_associated_SNPs_43727 0 0 1 0 1 SNX1 chr15:64418419 5'GT 64418419 Upstream 5bp
chr15 64418415 64418415 1 + C T UCEC 64418398 + 64418378 64418418 41 ATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTCATA ATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTTATA < 41bp 1 0.109249497048569 1 0.0939939618110657 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418398 chr15:64418415 synonymous SNV . 0 38 hm5C_associated_SNPs_43728 0 0 1 0 1 SNX1 chr15:64418419 5'GT 64418419 Upstream 5bp
chr2 241514979 241514979 1 + C G UCEC 241514997 + 241514977 241515017 41 TCCTGAGCTTCTTCCCGGAGCTGAAGGAGCAGAGCGTGGAC TCGTGAGCTTCTTCCCGGAGCTGAAGGAGCAGAGCGTGGAC < 41bp 1 0.592442400108066 1 0.2728670835495 experiment 0.815115199783869 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241514997 chr2:241514979 nonsynonymous SNV 0.999 4 3 hm5C_associated_SNPs_43729 0 0 1 0 1 RNPEPL1 chr2:241515027 5'GT 241515027 Upstream 49bp
chr7 135291561 135291561 1 + C G UCEC 135291549 + 135291529 135291569 41 TTCGTCATGAAACAAGAATCCACATCTTGAATCTTCTCATT TTCGTCATGAAACAAGAATCCACATCTTGAATGTTCTCATT < 41bp 1 0.212434232840001 1 0.0828733444213867 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135291549 chr7:135291561 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_43730 0 0 1 0 1 NUP205 chr7:135291499 3'AG 135291499 Downstream 63bp
chrX 105921450 105921450 1 + T A UCEC 105921458 + 105921438 105921478 41 AAAGTGGAAGTCTATTTGCACAAGATTTATAGTCCAGAGAA AAAGTGGAAGTCAATTTGCACAAGATTTATAGTCCAGAGAA < 41bp 1 0.670501823015098 1 0.297337353229523 experiment 0.658996353969804 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105921458 chrX:105921450 nonsynonymous SNV 0.872 2 13 hm5C_associated_SNPs_43731 0 0 1 0 1 CXorf57 chrX:105921358 3'AG 105921358 Downstream 93bp
chr7 73922433 73922433 1 + G A UCEC 73922440 + 73922420 73922460 41 CTGGGTAAGCGCTGTGACGTCCCCACCAACGGCTGCGGACC CTGGGTAAGCGCTATGACGTCCCCACCAACGGCTGCGGACC < 41bp 1 0.50806881273061 1 0.219767212867737 experiment 0.983862374538779 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73922440 chr7:73922433 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_43732 0 0 1 0 1 GTF2IRD1 chr7:73922405 3'AG 73922405 Downstream 29bp
chr15 40708534 40708534 1 + G A UCEC 40708548 + 40708528 40708568 41 ACACAGGTAGCCCTGGACGGCATTCAGTGTTTTGGTGAGTG ACACAGATAGCCCTGGACGGCATTCAGTGTTTTGGTGAGTG < 41bp 1 0.0476501229812523 1 0.0348435640335083 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IVD ENSG00000128928 CDS Human protein_coding chr15:40708548 chr15:40708534 nonsynonymous SNV 0.980 2 7 hm5C_associated_SNPs_43734 0 0 1 0 2 IVD chr15:40708489 3'AG 40708489 Downstream 46bp
chr15 40708534 40708534 1 + G A UCEC 40708548 + 40708528 40708568 41 ACACAGGTAGCCCTGGACGGCATTCAGTGTTTTGGTGAGTG ACACAGATAGCCCTGGACGGCATTCAGTGTTTTGGTGAGTG < 41bp 1 0.0476501229812523 1 0.0348435640335083 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IVD ENSG00000128928 CDS Human protein_coding chr15:40708548 chr15:40708534 nonsynonymous SNV 0.980 2 7 hm5C_associated_SNPs_43734 0 0 1 0 2 IVD chr15:40708561 5'GT 40708561 Upstream 28bp
chr7 102944355 102944355 1 + G A UCEC 102944354 + 102944334 102944374 41 AAGCAGAGATTGAACGTGAGCGTGGAGTAATCCTTAGAGAG AAGCAGAGATTGAACGTGAGCATGGAGTAATCCTTAGAGAG < 41bp 1 0.537695064561551 1 0.473426014184952 experiment 0.924609870876898 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PMPCB ENSG00000105819 CDS Human protein_coding chr7:102944354 chr7:102944355 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_43735 0 0 1 0 1 PMPCB chr7:102944289 3'AG 102944289 Downstream 67bp
chr6 145103184 145103184 1 + A G UCEC 145103189 + 145103169 145103209 41 ATGATGGACTTGAGCAAATGCATAAGGACCTGGTCAACGTT ATGATGGACTTGAGCGAATGCATAAGGACCTGGTCAACGTT < 41bp 1 0.166390792472169 1 0.385030627250671 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:145103189 chr6:145103184 nonsynonymous SNV 0.994 0 16 hm5C_associated_SNPs_43737 0 0 1 0 1 UTRN chr6:145103259 5'GT 145103259 Upstream 76bp
chr22 51117798 51117798 1 + T C UCEC 51117816 + 51117796 51117836 41 CATGGGGGCCCAGAACGCCTCGGGGAACACAGCCCTGCACA CACGGGGGCCCAGAACGCCTCGGGGAACACAGCCCTGCACA < 41bp 1 0.753519172208237 1 0.972082912921906 experiment 0.492961655583525 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51117816 chr22:51117798 nonsynonymous SNV . 0 3 hm5C_associated_SNPs_43738 0 0 0 0 2 SHANK3 chr22:51117740 3'AG 51117740 Downstream 59bp
chr22 51117798 51117798 1 + T C UCEC 51117816 + 51117796 51117836 41 CATGGGGGCCCAGAACGCCTCGGGGAACACAGCCCTGCACA CACGGGGGCCCAGAACGCCTCGGGGAACACAGCCCTGCACA < 41bp 1 0.753519172208237 1 0.972082912921906 experiment 0.492961655583525 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51117816 chr22:51117798 nonsynonymous SNV . 0 3 hm5C_associated_SNPs_43738 0 0 0 0 2 SHANK3 chr22:51117856 5'GT 51117856 Upstream 59bp
chr1 200817246 200817246 1 + G A UCEC 200817245 + 200817225 200817265 41 CTCCAAACCGAGGAATCACTCGTTCTATTAGTAATGAAGGA CTCCAAACCGAGGAATCACTCATTCTATTAGTAATGAAGGA < 41bp 1 0.0670831162982652 1 0.481988459825516 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200817245 chr1:200817246 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_43740 0 0 1 0 1 CAMSAP2 chr1:200817160 3'AG 200817160 Downstream 87bp
chr5 159849879 159849879 1 + G A UCEC 159849863 + 159849843 159849883 41 GTCTGTAAAGACCAAGGGACCCCTCAAACAAAAACAGCCAA GTCTGTAAAGACCAAGGGACCCCTCAAACAAAAACAACCAA < 41bp 1 0.133059351422654 1 0.208641350269318 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTTG1 ENSG00000164611 CDS Human protein_coding chr5:159849863 chr5:159849879 synonymous SNV . 0 37 hm5C_associated_SNPs_43741 0 0 1 0 1 PTTG1 chr5:159849900 5'GT 159849900 Upstream 22bp
chr7 129950656 129950656 1 + G A UCEC 129950671 + 129950651 129950691 41 GCTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTG GCTCCAAAGTGTACCATGGACCCCACGCCAATTCGGAAGTG < 41bp 1 0.578595109239044 1 0.0636526644229889 experiment 0.842809781521911 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950671 chr7:129950656 nonsynonymous SNV 0.994 4 6 hm5C_associated_SNPs_43742 0 0 0 0 1 CPA4 chr7:129950627 3'AG 129950627 Downstream 30bp
chr7 129950656 129950656 1 + G A UCEC 129950672 + 129950652 129950692 41 CTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTGG CTCCAAAGTGTACCATGGACCCCACGCCAATTCGGAAGTGG < 41bp 1 0.0930502358034615 1 0.0731083750724792 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950672 chr7:129950656 nonsynonymous SNV 0.994 4 5 hm5C_associated_SNPs_43743 0 0 0 0 1 CPA4 chr7:129950627 3'AG 129950627 Downstream 30bp
chr1 43900098 43900098 1 + G A UCEC 43900109 + 43900089 43900129 41 CTGAGTGTCGCCACCTGCAGCAGCTCCTGGTGAGGCGAGTT CTGAGTGTCACCACCTGCAGCAGCTCCTGGTGAGGCGAGTT < 41bp 1 0.0839352130533388 1 0.229417055845261 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43900109 chr1:43900098 nonsynonymous SNV 0.998 0 10 hm5C_associated_SNPs_43745 0 0 1 0 2 SZT2 chr1:43900057 3'AG 43900057 Downstream 42bp
chr1 43900098 43900098 1 + G A UCEC 43900109 + 43900089 43900129 41 CTGAGTGTCGCCACCTGCAGCAGCTCCTGGTGAGGCGAGTT CTGAGTGTCACCACCTGCAGCAGCTCCTGGTGAGGCGAGTT < 41bp 1 0.0839352130533388 1 0.229417055845261 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43900109 chr1:43900098 nonsynonymous SNV 0.998 0 10 hm5C_associated_SNPs_43745 0 0 1 0 2 SZT2 chr1:43900156 5'GT 43900156 Upstream 59bp
chr18 641405 641405 1 + G A UCEC 641423 + 641403 641443 41 TGGCCAGATTCTCCAGATGACCCGGAAGCACTTGGAGGACA TGACCAGATTCTCCAGATGACCCGGAAGCACTTGGAGGACA < 41bp 1 0.658466068753142 1 0.0620328485965729 experiment 0.683067862493717 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CLUL1 ENSG00000079101 CDS Human protein_coding chr18:641423 chr18:641405 nonsynonymous SNV 0.009 0 3 hm5C_associated_SNPs_43746 0 0 0 0 1 CLUL1 chr18:641327 3'AG 641327 Downstream 79bp
chr17 79418799 79418799 1 + C T UCEC 79418808 + 79418788 79418828 41 CACTGCCCCAGCGCAGCCGCCCACAGCCAACCCCTGCAGCG CACTGCCCCAGTGCAGCCGCCCACAGCCAACCCCTGCAGCG < 41bp 1 0.141348663575291 1 0.106047123670578 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BAHCC1 ENSG00000171282 CDS Human other chr17:79418808 chr17:79418799 nonsynonymous SNV 0.000 0 12 hm5C_associated_SNPs_43748 0 0 1 0 1 BAHCC1 chr17:79418896 5'GT 79418896 Upstream 98bp
chr20 34776326 34776326 1 + C A UCEC 34776322 + 34776302 34776342 41 TGTGCCAATGGCCTGCTCATCTACCGGGACCGGCTGAGAAT TGTGCCAATGGCCTGCTCATCTACAGGGACCGGCTGAGAAT < 41bp 1 0.775203351688493 1 0.547480285167694 experiment 0.449593296623013 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPB41L1 ENSG00000088367 CDS Human protein_coding chr20:34776322 chr20:34776326 synonymous SNV . 0 25 hm5C_associated_SNPs_43752 0 0 1 0 2 EPB41L1 chr20:34776269 3'AG 34776269 Downstream 58bp
chr20 34776326 34776326 1 + C A UCEC 34776322 + 34776302 34776342 41 TGTGCCAATGGCCTGCTCATCTACCGGGACCGGCTGAGAAT TGTGCCAATGGCCTGCTCATCTACAGGGACCGGCTGAGAAT < 41bp 1 0.775203351688493 1 0.547480285167694 experiment 0.449593296623013 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPB41L1 ENSG00000088367 CDS Human protein_coding chr20:34776322 chr20:34776326 synonymous SNV . 0 25 hm5C_associated_SNPs_43752 0 0 1 0 2 EPB41L1 chr20:34776421 5'GT 34776421 Upstream 96bp
chr15 63073421 63073421 1 + C T UCEC 63073407 + 63073387 63073427 41 CAGACGACTGTGGTTAAATACTCCAAAGCCATTGCGGTGAC CAGACGACTGTGGTTAAATACTCCAAAGCCATTGTGGTGAC < 41bp 1 0.648716559812036 1 0.975176811218262 experiment 0.702566880375927 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63073407 chr15:63073421 nonsynonymous SNV 0.996 2 35 hm5C_associated_SNPs_43756 0 0 0 0 2 TLN2 chr15:63073339 3'AG 63073339 Downstream 83bp
chr15 63073421 63073421 1 + C T UCEC 63073407 + 63073387 63073427 41 CAGACGACTGTGGTTAAATACTCCAAAGCCATTGCGGTGAC CAGACGACTGTGGTTAAATACTCCAAAGCCATTGTGGTGAC < 41bp 1 0.648716559812036 1 0.975176811218262 experiment 0.702566880375927 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63073407 chr15:63073421 nonsynonymous SNV 0.996 2 35 hm5C_associated_SNPs_43756 0 0 0 0 2 TLN2 chr15:63073440 5'GT 63073440 Upstream 20bp
chr19 45490675 45490675 1 + G A UCEC 45490656 + 45490636 45490676 41 TGATGAGTTGTACGAGCAGTCAGATGAGGAGCAGGACTCGG TGATGAGTTGTACGAGCAGTCAGATGAGGAGCAGGACTCAG < 41bp 1 0.696391079982861 1 0.784320950508118 experiment 0.607217840034277 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45490656 chr19:45490675 synonymous SNV . 0 40 hm5C_associated_SNPs_43757 0 0 1 0 1 CLPTM1 chr19:45490681 5'GT 45490681 Upstream 7bp
chr12 57597273 57597273 1 + C T UCEC 57597276 + 57597256 57597296 41 GACGCCGACTGCATGGACGGCAGCGACGAGGAGGCCTGCGG GACGCCGACTGCATGGATGGCAGCGACGAGGAGGCCTGCGG < 41bp 1 0.287824684299148 1 0.232824862003326 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57597276 chr12:57597273 synonymous SNV . 0 18 hm5C_associated_SNPs_43758 0 0 1 0 1 LRP1 chr12:57597304 5'GT 57597304 Upstream 32bp
chr4 3418757 3418757 1 + A G UCEC 3418764 + 3418744 3418784 41 GCAGCAGGTCCCCAGCAGCCCGGCTTCCAAGCACAGCCTCG GCAGCAGGTCCCCGGCAGCCCGGCTTCCAAGCACAGCCTCG < 41bp 1 0.644062961024898 1 0.402678996324539 experiment 0.711874077950203 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RGS12 ENSG00000159788 CDS Human protein_coding chr4:3418764 chr4:3418757 nonsynonymous SNV 0.957 2 14 hm5C_associated_SNPs_43759 0 0 0 0 1 RGS12 chr4:3418819 5'GT 3418819 Upstream 63bp
chr1 11897081 11897081 1 + G A UCEC 11897086 + 11897066 11897106 41 TCCTCACCCGGGCTGGCGAGCAGCGCAAACGGAGCCAGTCC TCCTCACCCGGGCTGACGAGCAGCGCAAACGGAGCCAGTCC < 41bp 1 0.698412885883068 1 0.893293023109436 experiment 0.603174228233864 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11897086 chr1:11897081 nonsynonymous SNV 0.191 2 16 hm5C_associated_SNPs_43761 0 0 1 0 1 CLCN6 chr1:11897056 3'AG 11897056 Downstream 26bp
chr15 74325024 74325024 1 + G A UCEC 74325006 + 74324986 74325026 41 TACAGTCAGTGCCCGGGGCACACCCCGTGCCAGTGTACGCC TACAGTCAGTGCCCGGGGCACACCCCGTGCCAGTGTACACC < 41bp 1 0.293147147716074 1 0.0441511869430542 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74325006 chr15:74325024 nonsynonymous SNV 0.018 2 39 hm5C_associated_SNPs_43763 0 0 1 0 2 PML chr15:74324968 3'AG 74324968 Downstream 57bp
chr15 74325024 74325024 1 + G A UCEC 74325006 + 74324986 74325026 41 TACAGTCAGTGCCCGGGGCACACCCCGTGCCAGTGTACGCC TACAGTCAGTGCCCGGGGCACACCCCGTGCCAGTGTACACC < 41bp 1 0.293147147716074 1 0.0441511869430542 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74325006 chr15:74325024 nonsynonymous SNV 0.018 2 39 hm5C_associated_SNPs_43763 0 0 1 0 2 PML chr15:74325056 5'GT 74325056 Upstream 33bp
chr6 30886618 30886618 1 + G A UCEC 30886601 + 30886581 30886621 41 AGTGTTTAAATGTTTATCTTCAGATGCAGAGGTTGTGGTAG AGTGTTTAAATGTTTATCTTCAGATGCAGAGGTTGTGATAG < 41bp 1 0.170712465068971 1 0.38204824924469 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VARS2 ENSG00000137411 CDS Human protein_coding chr6:30886601 chr6:30886618 nonsynonymous SNV 0.992 3 38 hm5C_associated_SNPs_43765 0 0 1 0 2 VARS2 chr6:30886604 3'AG 30886604 Downstream 15bp
chr6 30886618 30886618 1 + G A UCEC 30886601 + 30886581 30886621 41 AGTGTTTAAATGTTTATCTTCAGATGCAGAGGTTGTGGTAG AGTGTTTAAATGTTTATCTTCAGATGCAGAGGTTGTGATAG < 41bp 1 0.170712465068971 1 0.38204824924469 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VARS2 ENSG00000137411 CDS Human protein_coding chr6:30886601 chr6:30886618 nonsynonymous SNV 0.992 3 38 hm5C_associated_SNPs_43765 0 0 1 0 2 VARS2 chr6:30886692 5'GT 30886692 Upstream 75bp
chr12 112229176 112229176 1 + G A UCEC 112229156 + 112229136 112229176 41 CATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTG CATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTA < 41bp 1 0.290927939266155 1 0.169102966785431 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229156 chr12:112229176 nonsynonymous SNV 0.619 1 41 hm5C_associated_SNPs_43766 0 0 1 0 2 ALDH2 chr12:112229110 3'AG 112229110 Downstream 67bp
chr12 112229176 112229176 1 + G A UCEC 112229156 + 112229136 112229176 41 CATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTG CATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTA < 41bp 1 0.290927939266155 1 0.169102966785431 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human protein_coding chr12:112229156 chr12:112229176 nonsynonymous SNV 0.619 1 41 hm5C_associated_SNPs_43766 0 0 1 0 2 ALDH2 chr12:112229223 5'GT 112229223 Upstream 48bp
chr12 112229176 112229176 1 + G A UCEC 112229157 + 112229137 112229177 41 ATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTGC ATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTAC < 41bp 1 0.758845427574368 1 0.567109405994415 experiment 0.482309144851264 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229157 chr12:112229176 nonsynonymous SNV 0.619 1 40 hm5C_associated_SNPs_43767 0 0 1 0 2 ALDH2 chr12:112229110 3'AG 112229110 Downstream 67bp
chr12 112229176 112229176 1 + G A UCEC 112229157 + 112229137 112229177 41 ATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTGC ATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTAC < 41bp 1 0.758845427574368 1 0.567109405994415 experiment 0.482309144851264 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human protein_coding chr12:112229157 chr12:112229176 nonsynonymous SNV 0.619 1 40 hm5C_associated_SNPs_43767 0 0 1 0 2 ALDH2 chr12:112229223 5'GT 112229223 Upstream 48bp
chr12 112229176 112229176 1 + G A UCEC 112229168 + 112229148 112229188 41 ATTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGG ATTTGGCCCCACGGCTGGGGCCGCCATTACCTCCCATGAGG < 41bp 1 0.168718030752001 1 0.135394364595413 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229168 chr12:112229176 nonsynonymous SNV 0.619 1 29 hm5C_associated_SNPs_43768 0 0 1 0 2 ALDH2 chr12:112229110 3'AG 112229110 Downstream 67bp
chr12 112229176 112229176 1 + G A UCEC 112229168 + 112229148 112229188 41 ATTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGG ATTTGGCCCCACGGCTGGGGCCGCCATTACCTCCCATGAGG < 41bp 1 0.168718030752001 1 0.135394364595413 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human protein_coding chr12:112229168 chr12:112229176 nonsynonymous SNV 0.619 1 29 hm5C_associated_SNPs_43768 0 0 1 0 2 ALDH2 chr12:112229223 5'GT 112229223 Upstream 48bp
chr12 112229176 112229176 1 + G A UCEC 112229169 + 112229149 112229189 41 TTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGGA TTTGGCCCCACGGCTGGGGCCGCCATTACCTCCCATGAGGA < 41bp 1 0.720008137916621 1 0.788209080696106 experiment 0.559983724166757 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229169 chr12:112229176 nonsynonymous SNV 0.619 1 28 hm5C_associated_SNPs_43769 0 0 1 0 2 ALDH2 chr12:112229110 3'AG 112229110 Downstream 67bp
chr12 112229176 112229176 1 + G A UCEC 112229169 + 112229149 112229189 41 TTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGGA TTTGGCCCCACGGCTGGGGCCGCCATTACCTCCCATGAGGA < 41bp 1 0.720008137916621 1 0.788209080696106 experiment 0.559983724166757 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human protein_coding chr12:112229169 chr12:112229176 nonsynonymous SNV 0.619 1 28 hm5C_associated_SNPs_43769 0 0 1 0 2 ALDH2 chr12:112229223 5'GT 112229223 Upstream 48bp
chr12 31247735 31247735 1 + C T UCEC 31247744 + 31247724 31247764 41 CAGAGCCAGATCGACAACATCAACCTGTTCAAGGTAGAGGT CAGAGCCAGATTGACAACATCAACCTGTTCAAGGTAGAGGT < 41bp 1 0.151322648060891 1 0.059501439332962 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31247744 chr12:31247735 synonymous SNV . 0 12 hm5C_associated_SNPs_43770 0 0 0 1 2 DDX11 chr12:31247689 3'AG 31247689 Downstream 47bp
chr12 31247735 31247735 1 + C T UCEC 31247744 + 31247724 31247764 41 CAGAGCCAGATCGACAACATCAACCTGTTCAAGGTAGAGGT CAGAGCCAGATTGACAACATCAACCTGTTCAAGGTAGAGGT < 41bp 1 0.151322648060891 1 0.059501439332962 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31247744 chr12:31247735 synonymous SNV . 0 12 hm5C_associated_SNPs_43770 0 0 0 1 2 DDX11 chr12:31247756 5'GT 31247756 Upstream 22bp
chr1 104115864 104115864 1 + C A UCEC 104115875 + 104115855 104115895 41 TATCGAGAACTACAATGATGCTACTCAGGTAAATTTTTTTA TATCGAGAAATACAATGATGCTACTCAGGTAAATTTTTTTA < 41bp 1 0.239586772324764 1 0.0745550692081451 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AMY2B ENSG00000240038 CDS Human protein_coding chr1:104115875 chr1:104115864 nonsynonymous SNV 0.328 3 10 hm5C_associated_SNPs_43771 0 0 0 0 1 AMY2B chr1:104115882 5'GT 104115882 Upstream 19bp
chr4 79440607 79440607 1 + C A UCEC 79440588 + 79440568 79440608 41 GGCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT GGCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTAT < 41bp 1 0.184580154072491 1 0.607966721057892 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440588 chr4:79440607 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_43772 0 0 1 0 1 FRAS1 chr4:79440635 5'GT 79440635 Upstream 29bp
chr4 79440607 79440607 1 + C A UCEC 79440589 + 79440569 79440609 41 GCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT GCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTATT < 41bp 1 0.396182656062802 1 0.449177175760269 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440589 chr4:79440607 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_43773 0 0 1 0 1 FRAS1 chr4:79440635 5'GT 79440635 Upstream 29bp
chr8 59347023 59347023 1 + G T UCEC 59347026 + 59347006 59347046 41 AATTGAGACCTTACAATGAACCAACAAATGCTCAATTTCTG AATTGAGACCTTACAATTAACCAACAAATGCTCAATTTCTG < 41bp 1 0.0980995752624195 1 0.0924267768859863 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UBXN2B ENSG00000215114 CDS Human protein_coding chr8:59347026 chr8:59347023 stopgain 0.997 0 18 hm5C_associated_SNPs_43774 0 0 0 0 1 UBXN2B chr8:59346954 3'AG 59346954 Downstream 70bp
chrX 55029468 55029468 1 + G A UCEC 55029466 + 55029446 55029486 41 CCATGCGGACCCTGGGAGGCCTGAGCGGCTAGTCTTTAAGA CCATGCGGACCCTGGGAGGCCTAAGCGGCTAGTCTTTAAGA < 41bp 1 0.397271195959937 1 0.403611570596695 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control APEX2 ENSG00000169188 CDS Human protein_coding chrX:55029466 chrX:55029468 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_43776 0 0 1 0 2 APEX2 chrX:55029395 3'AG 55029395 Downstream 74bp
chrX 55029468 55029468 1 + G A UCEC 55029466 + 55029446 55029486 41 CCATGCGGACCCTGGGAGGCCTGAGCGGCTAGTCTTTAAGA CCATGCGGACCCTGGGAGGCCTAAGCGGCTAGTCTTTAAGA < 41bp 1 0.397271195959937 1 0.403611570596695 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control APEX2 ENSG00000169188 CDS Human protein_coding chrX:55029466 chrX:55029468 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_43776 0 0 1 0 2 APEX2 chrX:55029541 5'GT 55029541 Upstream 74bp
chr11 61725743 61725743 1 + G C UCEC 61725725 + 61725705 61725745 41 GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGCAGTT GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGCACTT < 41bp 1 0.252999790018092 1 0.191117525100708 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61725725 chr11:61725743 nonsynonymous SNV 0.998 5 39 hm5C_associated_SNPs_43777 0 0 0 1 1 BEST1 chr11:61725770 5'GT 61725770 Upstream 28bp
chr10 75867086 75867086 1 + C T UCEC 75867081 + 75867061 75867101 41 ACCTCAGGAGCCTGACTTCCCGCCGCCTCCACCAGACCTTG ACCTCAGGAGCCTGACTTCCCGCCGTCTCCACCAGACCTTG < 41bp 1 0.743673419981136 1 0.187676936388016 experiment 0.512653160037727 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75867081 chr10:75867086 nonsynonymous SNV 0.999 3 26 hm5C_associated_SNPs_43778 0 0 1 0 2 VCL chr10:75866988 3'AG 75866988 Downstream 99bp
chr10 75867086 75867086 1 + C T UCEC 75867081 + 75867061 75867101 41 ACCTCAGGAGCCTGACTTCCCGCCGCCTCCACCAGACCTTG ACCTCAGGAGCCTGACTTCCCGCCGTCTCCACCAGACCTTG < 41bp 1 0.743673419981136 1 0.187676936388016 experiment 0.512653160037727 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75867081 chr10:75867086 nonsynonymous SNV 0.999 3 26 hm5C_associated_SNPs_43778 0 0 1 0 2 VCL chr10:75867112 5'GT 75867112 Upstream 27bp
chr22 31658767 31658767 1 + C T UCEC 31658771 + 31658751 31658791 41 GGGGACACTGAGGAGACGTTCCCTAAGGTGCCACCTCCCAC GGGGACACTGAGGAGATGTTCCCTAAGGTGCCACCTCCCAC < 41bp 1 0.434752119128345 1 0.0240149199962616 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31658771 chr22:31658767 nonsynonymous SNV 0.999 3 17 hm5C_associated_SNPs_43784 0 0 1 0 1 LIMK2 chr22:31658777 5'GT 31658777 Upstream 11bp
chr22 41924494 41924494 1 + C T UCEC 41924486 + 41924466 41924506 41 CCACCTTCTCCTTGCAGCCCCTGAAGTGCATCATCAAGCAC CCACCTTCTCCTTGCAGCCCCTGAAGTGTATCATCAAGCAC < 41bp 1 0.595909283770769 1 0.264200687408447 experiment 0.808181432458463 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41924486 chr22:41924494 synonymous SNV . 0 29 hm5C_associated_SNPs_43785 0 0 1 0 1 ACO2 chr22:41924483 3'AG 41924483 Downstream 12bp
chr5 131607090 131607090 1 + G A UCEC 131607104 + 131607084 131607124 41 GAGCCCGTGGCCGCGGAGCCCAAGCAGTCAGGCTCCTTCCG GAGCCCATGGCCGCGGAGCCCAAGCAGTCAGGCTCCTTCCG < 41bp 1 0.653671752348262 1 0.174668401479721 experiment 0.692656495303476 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131607104 chr5:131607090 nonsynonymous SNV 0.000 0 7 hm5C_associated_SNPs_43786 0 0 1 0 2 PDLIM4 chr5:131606996 3'AG 131606996 Downstream 95bp
chr5 131607090 131607090 1 + G A UCEC 131607104 + 131607084 131607124 41 GAGCCCGTGGCCGCGGAGCCCAAGCAGTCAGGCTCCTTCCG GAGCCCATGGCCGCGGAGCCCAAGCAGTCAGGCTCCTTCCG < 41bp 1 0.653671752348262 1 0.174668401479721 experiment 0.692656495303476 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131607104 chr5:131607090 nonsynonymous SNV 0.000 0 7 hm5C_associated_SNPs_43786 0 0 1 0 2 PDLIM4 chr5:131607159 5'GT 131607159 Upstream 70bp
chr12 21598309 21598309 1 + T A UCEC 21598304 + 21598284 21598324 41 TCTAAAATATTGGAAGAATTCGATGTTGAAGAACAATCAAG TCTAAAATATTGGAAGAATTCGATGATGAAGAACAATCAAG < 41bp 1 0.584247194279888 1 0.442263007164001 experiment 0.831505611440225 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PYROXD1 ENSG00000121350 CDS Human protein_coding chr12:21598304 chr12:21598309 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_43787 0 0 1 0 2 PYROXD1 chr12:21598281 3'AG 21598281 Downstream 29bp
chr12 21598309 21598309 1 + T A UCEC 21598304 + 21598284 21598324 41 TCTAAAATATTGGAAGAATTCGATGTTGAAGAACAATCAAG TCTAAAATATTGGAAGAATTCGATGATGAAGAACAATCAAG < 41bp 1 0.584247194279888 1 0.442263007164001 experiment 0.831505611440225 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PYROXD1 ENSG00000121350 CDS Human protein_coding chr12:21598304 chr12:21598309 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_43787 0 0 1 0 2 PYROXD1 chr12:21598400 5'GT 21598400 Upstream 92bp
chr1 120254696 120254696 1 + T C UCEC 120254699 + 120254679 120254719 41 AGTGACAGCCTGGACCCTTGCTGCCGGAAGATCTTGCAAGA AGTGACAGCCTGGACCCCTGCTGCCGGAAGATCTTGCAAGA < 41bp 1 0.581793036548424 1 0.441557437181473 experiment 0.836413926903152 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120254699 chr1:120254696 synonymous SNV . 0 18 hm5C_associated_SNPs_43788 0 0 1 0 1 PHGDH chr1:120254783 5'GT 120254783 Upstream 88bp
chr1 120254696 120254696 1 + T C UCEC 120254703 + 120254683 120254723 41 ACAGCCTGGACCCTTGCTGCCGGAAGATCTTGCAAGATGGA ACAGCCTGGACCCCTGCTGCCGGAAGATCTTGCAAGATGGA < 41bp 1 0.70123867503307 1 0.793286085128784 experiment 0.597522649933859 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120254703 chr1:120254696 synonymous SNV . 0 14 hm5C_associated_SNPs_43789 0 0 1 0 1 PHGDH chr1:120254783 5'GT 120254783 Upstream 88bp
chr6 13616707 13616707 1 + C A UCEC 13616704 + 13616684 13616724 41 CATTCCAAAAGAAAAGAAAACTCCTTCCAGACACTATTTTG CATTCCAAAAGAAAAGAAAACTCATTCCAGACACTATTTTG < 41bp 1 0.29429914954551 1 0.0850081741809845 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOL7 ENSG00000225921 CDS Human protein_coding chr6:13616704 chr6:13616707 nonsynonymous SNV 0.479 4 24 hm5C_associated_SNPs_43790 0 0 1 0 2 NOL7 chr6:13616695 3'AG 13616695 Downstream 13bp
chr6 13616707 13616707 1 + C A UCEC 13616704 + 13616684 13616724 41 CATTCCAAAAGAAAAGAAAACTCCTTCCAGACACTATTTTG CATTCCAAAAGAAAAGAAAACTCATTCCAGACACTATTTTG < 41bp 1 0.29429914954551 1 0.0850081741809845 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOL7 ENSG00000225921 CDS Human protein_coding chr6:13616704 chr6:13616707 nonsynonymous SNV 0.479 4 24 hm5C_associated_SNPs_43790 0 0 1 0 2 NOL7 chr6:13616753 5'GT 13616753 Upstream 47bp
chr9 18887967 18887967 1 + C A UCEC 18887949 + 18887929 18887969 41 TGGACAGATCCTTCAAGTTGCAAACCTTAGCGGTGGGTCTC TGGACAGATCCTTCAAGTTGCAAACCTTAGCGGTGGGTATC < 41bp 1 0.0566927035422112 1 0.033018559217453 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18887949 chr9:18887967 nonsynonymous SNV 0.995 0 39 hm5C_associated_SNPs_43791 0 0 0 0 1 ADAMTSL1 chr9:18888041 5'GT 18888041 Upstream 75bp
chr12 112130565 112130565 1 + A G UCEC 112130547 + 112130527 112130567 41 GCTGTTTCCAGTCCCCCCGTCTCCAGTGGGTGTGGAGAACA GCTGTTTCCAGTCCCCCCGTCTCCAGTGGGTGTGGAGAGCA < 41bp 1 0.785070202445809 1 0.970364570617676 experiment 0.429859595108383 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ACAD10 ENSG00000111271 CDS Human protein_coding chr12:112130547 chr12:112130565 nonsynonymous SNV 0.000 0 39 hm5C_associated_SNPs_43792 0 0 0 0 1 ACAD10 chr12:112130501 3'AG 112130501 Downstream 65bp
chr2 109365464 109365464 1 + A G UCEC 109365446 + 109365426 109365466 41 ATTGTTGAAACTTTTGCCAACAAAAGCGGGCAGTCTGCATT ATTGTTGAAACTTTTGCCAACAAAAGCGGGCAGTCTGCGTT < 41bp 1 0.375840890784833 1 0.241679340600967 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109365446 chr2:109365464 synonymous SNV . 0 39 hm5C_associated_SNPs_43793 0 0 0 0 1 RANBP2 chr2:109365376 3'AG 109365376 Downstream 89bp
chr7 91714912 91714912 1 + C A UCEC 91714896 + 91714876 91714916 41 ATGGAGAGGACCATTCTATTCAGCAGGTTTCAGAACCTTGG ATGGAGAGGACCATTCTATTCAGCAGGTTTCAGAACATTGG < 41bp 1 0.724415774158542 1 0.458120614290237 experiment 0.551168451682916 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714896 chr7:91714912 nonsynonymous SNV 0.979 1 37 hm5C_associated_SNPs_43794 0 0 0 0 1 AKAP9 chr7:91715000 5'GT 91715000 Upstream 89bp
chr7 91714912 91714912 1 + C A UCEC 91714906 + 91714886 91714926 41 CCATTCTATTCAGCAGGTTTCAGAACCTTGGCTAGAAGAGA CCATTCTATTCAGCAGGTTTCAGAACATTGGCTAGAAGAGA < 41bp 1 0.335341788841484 1 0.782205641269684 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714906 chr7:91714912 nonsynonymous SNV 0.979 1 27 hm5C_associated_SNPs_43795 0 0 0 0 1 AKAP9 chr7:91715000 5'GT 91715000 Upstream 89bp
chr7 91714912 91714912 1 + C A UCEC 91714917 + 91714897 91714937 41 AGCAGGTTTCAGAACCTTGGCTAGAAGAGAGAAAAGCTTAC AGCAGGTTTCAGAACATTGGCTAGAAGAGAGAAAAGCTTAC < 41bp 1 0.396572004351768 1 0.472725421190262 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714917 chr7:91714912 nonsynonymous SNV 0.979 1 16 hm5C_associated_SNPs_43796 0 0 0 0 1 AKAP9 chr7:91715000 5'GT 91715000 Upstream 89bp
chr2 32656069 32656069 1 + G A UCEC 32656070 + 32656050 32656090 41 TAGAAGTTCAACAAGAACAGCAGCAAAGGAGGCATCCTCAA TAGAAGTTCAACAAGAACAACAGCAAAGGAGGCATCCTCAA < 41bp 1 0.326787805129269 1 0.163377016782761 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32656070 chr2:32656069 synonymous SNV . 0 20 hm5C_associated_SNPs_43797 0 0 1 0 1 BIRC6 chr2:32656158 5'GT 32656158 Upstream 90bp
chr3 112715755 112715755 1 + T G UCEC 112715739 + 112715719 112715759 41 TCTTTTCTACATGCTTATAGCTTGAAGAGAACATTTTTATT TCTTTTCTACATGCTTATAGCTTGAAGAGAACATTTGTATT < 41bp 1 0.50582826280899 1 0.195688456296921 experiment 0.988343474382021 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GTPBP8 ENSG00000163607 CDS Human protein_coding chr3:112715739 chr3:112715755 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_43799 0 0 1 0 2 GTPBP8 chr3:112715739 3'AG 112715739 Downstream 17bp
chr3 112715755 112715755 1 + T G UCEC 112715739 + 112715719 112715759 41 TCTTTTCTACATGCTTATAGCTTGAAGAGAACATTTTTATT TCTTTTCTACATGCTTATAGCTTGAAGAGAACATTTGTATT < 41bp 1 0.50582826280899 1 0.195688456296921 experiment 0.988343474382021 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GTPBP8 ENSG00000163607 CDS Human protein_coding chr3:112715739 chr3:112715755 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_43799 0 0 1 0 2 GTPBP8 chr3:112715838 5'GT 112715838 Upstream 84bp
chrX 129185871 129185871 1 + A C UCEC 129185891 + 129185871 129185911 41 ATCCTCCTGGGAGCTCAGATCAAGAAGGAGACGATCCGATG CTCCTCCTGGGAGCTCAGATCAAGAAGGAGACGATCCGATG < 41bp 1 0.710045206670496 1 0.899373114109039 experiment 0.579909586659008 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129185891 chrX:129185871 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_43800 0 0 1 0 1 BCORL1 chrX:129185835 3'AG 129185835 Downstream 37bp
chr12 112915799 112915799 1 + A C UCEC 112915794 + 112915774 112915814 41 CTCCCGAGTGATTGTCATGACAACGAAAGAAGTGGAGAGAG CTCCCGAGTGATTGTCATGACAACGCAAGAAGTGGAGAGAG < 41bp 1 0.554404659090885 1 0.39040806889534 experiment 0.891190681818231 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915794 chr12:112915799 nonsynonymous SNV 0.994 3 26 hm5C_associated_SNPs_43801 0 0 1 0 1 PTPN11 chr12:112915819 5'GT 112915819 Upstream 21bp
chr6 26091205 26091205 1 + A C UCEC 26091207 + 26091187 26091227 41 TCGCCGTGTGGAGCCCCGAACTCCATGGGTTTCCAGTAGAA TCGCCGTGTGGAGCCCCGCACTCCATGGGTTTCCAGTAGAA < 41bp 1 0.784919584109539 1 0.932122409343719 experiment 0.430160831780921 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26091207 chr6:26091205 synonymous SNV . 0 19 hm5C_associated_SNPs_43802 0 0 0 0 1 HFE chr6:26091138 3'AG 26091138 Downstream 68bp
chr8 17815279 17815279 1 + G A UCEC 17815261 + 17815241 17815281 41 AACAGAAACTTAGACAGTTACAAGATCTTGTTGCTATGGTA AACAGAAACTTAGACAGTTACAAGATCTTGTTGCTATGATA < 41bp 1 0.683750230079532 1 0.216116845607758 experiment 0.632499539840937 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCM1 ENSG00000078674 CDS Human protein_coding chr8:17815261 chr8:17815279 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_43803 0 0 1 0 1 PCM1 chr8:17815284 5'GT 17815284 Upstream 6bp
chr4 184192384 184192384 1 + C A UCEC 184192371 + 184192351 184192391 41 CTGTATTTCAACCAAACCAGCCGTTAGTAGATTCTATAGAC CTGTATTTCAACCAAACCAGCCGTTAGTAGATTATATAGAC < 41bp 1 0.021332332795742 1 0.114134311676025 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WWC2 ENSG00000151718 CDS Human protein_coding chr4:184192371 chr4:184192384 nonsynonymous SNV 0.015 1 34 hm5C_associated_SNPs_43804 0 0 1 0 1 WWC2 chr4:184192394 5'GT 184192394 Upstream 11bp
chr16 29810040 29810040 1 + T G UCEC 29810025 + 29810005 29810045 41 TGCCGAGGGCCGGCCATGGGCCCTTTCTGTCACCATGTCTT TGCCGAGGGCCGGCCATGGGCCCTTTCTGTCACCAGGTCTT < 41bp 1 0.14531823603444 1 0.031805694103241 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29810025 chr16:29810040 nonsynonymous SNV 0.998 3 36 hm5C_associated_SNPs_43805 0 0 1 0 1 KIF22 chr16:29810068 5'GT 29810068 Upstream 29bp
chr22 51044063 51044063 1 + G A UCEC 51044075 + 51044055 51044095 41 AGGAGGACGACTTCTGGTTCCGTGGCTTCAACATGCGCACG AGGAGGACAACTTCTGGTTCCGTGGCTTCAACATGCGCACG < 41bp 1 0.310558302301581 1 0.467042535543442 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAPK8IP2 ENSG00000008735 CDS Human protein_coding chr22:51044075 chr22:51044063 nonsynonymous SNV 0.801 3 9 hm5C_associated_SNPs_43806 0 0 1 0 2 MAPK8IP2 chr22:51043990 3'AG 51043990 Downstream 74bp
chr22 51044063 51044063 1 + G A UCEC 51044075 + 51044055 51044095 41 AGGAGGACGACTTCTGGTTCCGTGGCTTCAACATGCGCACG AGGAGGACAACTTCTGGTTCCGTGGCTTCAACATGCGCACG < 41bp 1 0.310558302301581 1 0.467042535543442 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAPK8IP2 ENSG00000008735 CDS Human protein_coding chr22:51044075 chr22:51044063 nonsynonymous SNV 0.801 3 9 hm5C_associated_SNPs_43806 0 0 1 0 2 MAPK8IP2 chr22:51044162 5'GT 51044162 Upstream 100bp
chr12 69119555 69119555 1 + C A UCEC 69119560 + 69119540 69119580 41 ATAGTTCAAAAGTTTCTTATCCTGGGAGACATTGATGGTAA ATAGTTCAAAAGTTTATTATCCTGGGAGACATTGATGGTAA < 41bp 1 0.389713323795785 1 0.308158874511719 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69119560 chr12:69119555 nonsynonymous SNV 0.999 1 16 hm5C_associated_SNPs_43807 0 0 0 0 2 NUP107 chr12:69119507 3'AG 69119507 Downstream 49bp
chr12 69119555 69119555 1 + C A UCEC 69119560 + 69119540 69119580 41 ATAGTTCAAAAGTTTCTTATCCTGGGAGACATTGATGGTAA ATAGTTCAAAAGTTTATTATCCTGGGAGACATTGATGGTAA < 41bp 1 0.389713323795785 1 0.308158874511719 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69119560 chr12:69119555 nonsynonymous SNV 0.999 1 16 hm5C_associated_SNPs_43807 0 0 0 0 2 NUP107 chr12:69119576 5'GT 69119576 Upstream 22bp
chr19 10935776 10935776 1 + A G UCEC 10935765 + 10935745 10935785 41 GATGGGGCCCAGGAGAACACCTTCTCCATGGACCCCCAACT GATGGGGCCCAGGAGAACACCTTCTCCATGGGCCCCCAACT < 41bp 1 0.163673428107787 1 0.109748154878616 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10935765 chr19:10935776 nonsynonymous SNV 0.998 5 32 hm5C_associated_SNPs_43808 0 0 1 0 1 DNM2 chr19:10935733 3'AG 10935733 Downstream 44bp
chr1 45242430 45242430 1 + C A UCEC 45242439 + 45242419 45242459 41 GTGGGGAATTTCTCCTGGGGCTCAGAGTGTGAGTGAGGCCC GTGGGGAATTTATCCTGGGGCTCAGAGTGTGAGTGAGGCCC < 41bp 1 0.553324624007835 1 0.11680081486702 experiment 0.893350751984331 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS8 ENSG00000142937 CDS Human protein_coding chr1:45242439 chr1:45242430 nonsynonymous SNV 0.972 2 12 hm5C_associated_SNPs_43809 0 0 1 0 1 RPS8 chr1:45242347 3'AG 45242347 Downstream 84bp
chr1 45242430 45242430 1 + C A UCEC 45242441 + 45242421 45242461 41 GGGGAATTTCTCCTGGGGCTCAGAGTGTGAGTGAGGCCCTT GGGGAATTTATCCTGGGGCTCAGAGTGTGAGTGAGGCCCTT < 41bp 1 0.778983076710816 1 0.689712166786194 experiment 0.442033846578367 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS8 ENSG00000142937 CDS Human protein_coding chr1:45242441 chr1:45242430 nonsynonymous SNV 0.972 2 10 hm5C_associated_SNPs_43810 0 0 1 0 1 RPS8 chr1:45242347 3'AG 45242347 Downstream 84bp
chr21 45544578 45544578 1 + C A UCEC 45544584 + 45544564 45544604 41 AAGAGGTTCGAGATCTCTTGCAACCTGTCTTTGGACGCCAT AAGAGGTTCGAGATATCTTGCAACCTGTCTTTGGACGCCAT < 41bp 1 0.257676847257756 1 0.177045077085495 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45544584 chr21:45544578 synonymous SNV . 0 15 hm5C_associated_SNPs_43811 0 0 1 0 1 PWP2 chr21:45544608 5'GT 45544608 Upstream 31bp
chrX 48682083 48682083 1 + G A UCEC 48682101 + 48682081 48682121 41 GGGGGCCTCAGAATCTCAGGCCCCAGGAGAGGAGAACCTAC GGAGGCCTCAGAATCTCAGGCCCCAGGAGAGGAGAACCTAC < 41bp 1 0.305105201543311 1 0.426578968763351 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48682101 chrX:48682083 nonsynonymous SNV 0.002 0 3 hm5C_associated_SNPs_43812 0 0 1 0 1 HDAC6 chrX:48682082 3'AG 48682082 Downstream 2bp
chr3 142739464 142739464 1 + G T UCEC 142739480 + 142739460 142739500 41 GAGAGACATAAAACAAAAGGCAGATTAAGTCGATTTGAACC GAGATACATAAAACAAAAGGCAGATTAAGTCGATTTGAACC < 41bp 1 0.229138341430702 1 0.569075524806976 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2SURP ENSG00000163714 CDS Human protein_coding chr3:142739480 chr3:142739464 nonsynonymous SNV 0.999 4 5 hm5C_associated_SNPs_43813 0 0 1 0 2 U2SURP chr3:142739441 3'AG 142739441 Downstream 24bp
chr3 142739464 142739464 1 + G T UCEC 142739480 + 142739460 142739500 41 GAGAGACATAAAACAAAAGGCAGATTAAGTCGATTTGAACC GAGATACATAAAACAAAAGGCAGATTAAGTCGATTTGAACC < 41bp 1 0.229138341430702 1 0.569075524806976 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2SURP ENSG00000163714 CDS Human protein_coding chr3:142739480 chr3:142739464 nonsynonymous SNV 0.999 4 5 hm5C_associated_SNPs_43813 0 0 1 0 2 U2SURP chr3:142739535 5'GT 142739535 Upstream 72bp
chr20 1902325 1902325 1 + C T UCEC 1902319 + 1902299 1902339 41 ACGTCACCTTGCAGGGGGACCCTCTTCGTGGGACTGCCAAC ACGTCACCTTGCAGGGGGACCCTCTTTGTGGGACTGCCAAC < 41bp 1 0.0946251908561221 1 0.0271573960781097 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1902319 chr20:1902325 nonsynonymous SNV 0.877 2 27 hm5C_associated_SNPs_43814 0 0 0 0 1 SIRPA chr20:1902358 5'GT 1902358 Upstream 34bp
chr15 22969237 22969237 1 + C T UCEC 22969231 + 22969211 22969251 41 AGCCGGTACCTGACGCTGGACGGCTTCGACGCCATGTTCCG AGCCGGTACCTGACGCTGGACGGCTTTGACGCCATGTTCCG < 41bp 1 0.567338734110539 1 0.119818359613419 experiment 0.865322531778922 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22969231 chr15:22969237 synonymous SNV . 0 27 hm5C_associated_SNPs_43815 0 0 1 0 1 CYFIP1 chr15:22969163 3'AG 22969163 Downstream 75bp
chr11 20139740 20139740 1 + G A UCEC 20139725 + 20139705 20139745 41 GGCAGCCAACTACTCCAGCCCCCAGAGCTATGACAGCGACT GGCAGCCAACTACTCCAGCCCCCAGAGCTATGACAACGACT < 41bp 1 0.0560574459251714 1 0.307279855012894 experiment 1 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:20139725 chr11:20139740 nonsynonymous SNV 0.999 3 36 hm5C_associated_SNPs_43817 0 0 1 0 1 NAV2 chr11:20139679 3'AG 20139679 Downstream 62bp
chr5 65321800 65321800 1 + C T UCEC 65321797 + 65321777 65321817 41 ATAATTACTTACAGCAGTTGCCCCCAGAGGTAATGTATTTT ATAATTACTTACAGCAGTTGCCCTCAGAGGTAATGTATTTT < 41bp 1 0.0191206582105095 1 0.0668041706085205 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ERBIN ENSG00000112851 CDS Human protein_coding chr5:65321797 chr5:65321800 nonsynonymous SNV 0.973 1 24 hm5C_associated_SNPs_43818 0 0 1 0 1 ERBIN chr5:65321805 5'GT 65321805 Upstream 6bp
chr3 136667137 136667137 1 + A G UCEC 136667129 + 136667109 136667149 41 TTTCTCAGTATCACTAAAAGCACAAGGGAAAAACAAGCATT TTTCTCAGTATCACTAAAAGCACAAGGGGAAAACAAGCATT < 41bp 1 0.778499633485689 1 0.281068563461304 experiment 0.443000733028622 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NCK1 ENSG00000158092 CDS Human protein_coding chr3:136667129 chr3:136667137 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_43819 0 0 1 0 1 NCK1 chr3:136667101 3'AG 136667101 Downstream 37bp
chr1 94964188 94964188 1 + G T UCEC 94964179 + 94964159 94964199 41 TTCGATCTGGGGCTAATGTTCTAATTTGTGGTCCAAATGGC TTCGATCTGGGGCTAATGTTCTAATTTGTTGTCCAAATGGC < 41bp 1 0.508146545234327 1 0.172998905181885 experiment 0.983706909531346 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94964179 chr1:94964188 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_43820 0 0 1 0 2 ABCD3 chr1:94964158 3'AG 94964158 Downstream 31bp
chr1 94964188 94964188 1 + G T UCEC 94964179 + 94964159 94964199 41 TTCGATCTGGGGCTAATGTTCTAATTTGTGGTCCAAATGGC TTCGATCTGGGGCTAATGTTCTAATTTGTTGTCCAAATGGC < 41bp 1 0.508146545234327 1 0.172998905181885 experiment 0.983706909531346 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94964179 chr1:94964188 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_43820 0 0 1 0 2 ABCD3 chr1:94964235 5'GT 94964235 Upstream 48bp
chrX 153533707 153533707 1 + C A UCEC 153533726 + 153533706 153533746 41 TCTACATCATGAGGTACAAGCAGTCAGATCCAGAGAATCCG TATACATCATGAGGTACAAGCAGTCAGATCCAGAGAATCCG < 41bp 1 0.144068713062479 1 0.167200356721878 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153533726 chrX:153533707 nonsynonymous SNV 0.461 3 2 hm5C_associated_SNPs_43821 0 0 0 0 3 TKTL1 chrX:153533656 3'AG 153533656 Downstream 52bp
chrX 153533707 153533707 1 + C A UCEC 153533726 + 153533706 153533746 41 TCTACATCATGAGGTACAAGCAGTCAGATCCAGAGAATCCG TATACATCATGAGGTACAAGCAGTCAGATCCAGAGAATCCG < 41bp 1 0.144068713062479 1 0.167200356721878 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153533726 chrX:153533707 nonsynonymous SNV 0.461 3 2 hm5C_associated_SNPs_43821 0 0 0 0 3 TKTL1 chrX:153533674 3'AG 153533674 Downstream 34bp
chrX 153533707 153533707 1 + C A UCEC 153533726 + 153533706 153533746 41 TCTACATCATGAGGTACAAGCAGTCAGATCCAGAGAATCCG TATACATCATGAGGTACAAGCAGTCAGATCCAGAGAATCCG < 41bp 1 0.144068713062479 1 0.167200356721878 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153533726 chrX:153533707 nonsynonymous SNV 0.461 3 2 hm5C_associated_SNPs_43821 0 0 0 0 3 TKTL1 chrX:153533773 5'GT 153533773 Upstream 67bp
chr15 73468829 73468829 1 + A T UCEC 73468840 + 73468820 73468860 41 GACTGGAAAACCAACTCCAACTGTGAAGTGGGTCAAAAATG GACTGGAAATCCAACTCCAACTGTGAAGTGGGTCAAAAATG < 41bp 1 0.145786756119813 1 0.366112053394318 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NEO1 ENSG00000067141 CDS Human protein_coding chr15:73468840 chr15:73468829 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_43823 0 0 1 0 2 NEO1 chr15:73468744 3'AG 73468744 Downstream 86bp
chr15 73468829 73468829 1 + A T UCEC 73468840 + 73468820 73468860 41 GACTGGAAAACCAACTCCAACTGTGAAGTGGGTCAAAAATG GACTGGAAATCCAACTCCAACTGTGAAGTGGGTCAAAAATG < 41bp 1 0.145786756119813 1 0.366112053394318 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NEO1 ENSG00000067141 CDS Human protein_coding chr15:73468840 chr15:73468829 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_43823 0 0 1 0 2 NEO1 chr15:73468898 5'GT 73468898 Upstream 70bp
chr20 5154257 5154257 1 + A T UCEC 5154273 + 5154253 5154293 41 GCAGATGATACCCCGGAGGTCCTCAATAGGGCCCTTTCCAA GCAGTTGATACCCCGGAGGTCCTCAATAGGGCCCTTTCCAA < 41bp 1 0.172832865332577 1 0.0521049797534943 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDS2 ENSG00000101290 CDS Human protein_coding chr20:5154273 chr20:5154257 nonsynonymous SNV 0.929 3 5 hm5C_associated_SNPs_43824 0 0 1 0 2 CDS2 chr20:5154169 3'AG 5154169 Downstream 89bp
chr20 5154257 5154257 1 + A T UCEC 5154273 + 5154253 5154293 41 GCAGATGATACCCCGGAGGTCCTCAATAGGGCCCTTTCCAA GCAGTTGATACCCCGGAGGTCCTCAATAGGGCCCTTTCCAA < 41bp 1 0.172832865332577 1 0.0521049797534943 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDS2 ENSG00000101290 CDS Human protein_coding chr20:5154273 chr20:5154257 nonsynonymous SNV 0.929 3 5 hm5C_associated_SNPs_43824 0 0 1 0 2 CDS2 chr20:5154305 5'GT 5154305 Upstream 49bp
chr12 53516952 53516952 1 + C T UCEC 53516960 + 53516940 53516980 41 TTCTGCTTCGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT TTCTGCTTCGTCTTGGGGTTCTTCTATCCCGTCATGCTGAT < 41bp 1 0.128886158685965 1 0.0452195703983307 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53516960 chr12:53516952 synonymous SNV . 0 13 hm5C_associated_SNPs_43825 0 0 0 0 2 SOAT2 chr12:53516865 3'AG 53516865 Downstream 88bp
chr12 53516952 53516952 1 + C T UCEC 53516960 + 53516940 53516980 41 TTCTGCTTCGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT TTCTGCTTCGTCTTGGGGTTCTTCTATCCCGTCATGCTGAT < 41bp 1 0.128886158685965 1 0.0452195703983307 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53516960 chr12:53516952 synonymous SNV . 0 13 hm5C_associated_SNPs_43825 0 0 0 0 2 SOAT2 chr12:53517000 5'GT 53517000 Upstream 49bp
chr3 49568286 49568286 1 + C G UCEC 49568306 + 49568286 49568326 41 CCACACCCTGGAGGGCCTCCCCCTTGACACTGATAAGGGTG GCACACCCTGGAGGGCCTCCCCCTTGACACTGATAAGGGTG < 41bp 1 0.231152400485926 1 0.310950815677643 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DAG1 ENSG00000173402 CDS Human protein_coding chr3:49568306 chr3:49568286 nonsynonymous SNV 0.109 4 1 hm5C_associated_SNPs_43826 0 0 1 0 1 DAG1 chr3:49568230 3'AG 49568230 Downstream 57bp
chr9 100418042 100418042 1 + G C UCEC 100418035 + 100418015 100418055 41 AACTTCCAGTTCCGTTGGAGCTGGGAAGATTGGTAAGTGAT AACTTCCAGTTCCGTTGGAGCTGGGAACATTGGTAAGTGAT < 41bp 1 0.53982402396287 1 0.707043468952179 experiment 0.920351952074261 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100418035 chr9:100418042 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_43827 0 0 1 0 2 NCBP1 chr9:100417984 3'AG 100417984 Downstream 59bp
chr9 100418042 100418042 1 + G C UCEC 100418035 + 100418015 100418055 41 AACTTCCAGTTCCGTTGGAGCTGGGAAGATTGGTAAGTGAT AACTTCCAGTTCCGTTGGAGCTGGGAACATTGGTAAGTGAT < 41bp 1 0.53982402396287 1 0.707043468952179 experiment 0.920351952074261 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100418035 chr9:100418042 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_43827 0 0 1 0 2 NCBP1 chr9:100418046 5'GT 100418046 Upstream 5bp
chr19 35504587 35504587 1 + G C UCEC 35504567 + 35504547 35504587 41 CCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGACGCAG CCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGACGCAC < 41bp 1 0.775178844136305 1 0.144361793994904 experiment 0.44964231172739 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504567 chr19:35504587 nonsynonymous SNV 0.999 2 41 hm5C_associated_SNPs_43828 0 0 1 0 1 GRAMD1A chr19:35504595 5'GT 35504595 Upstream 9bp
chr10 75758107 75758107 1 + C G UCEC 75758099 + 75758079 75758119 41 TGACCTCACCGCGCCCGTGGCCGCCGTGCAGGCGGCCGTCA TGACCTCACCGCGCCCGTGGCCGCCGTGGAGGCGGCCGTCA < 41bp 1 0.311315165903427 1 0.297870934009552 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75758099 chr10:75758107 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_43829 0 0 1 0 1 VCL chr10:75758133 5'GT 75758133 Upstream 27bp
chr10 75758107 75758107 1 + C G UCEC 75758100 + 75758080 75758120 41 GACCTCACCGCGCCCGTGGCCGCCGTGCAGGCGGCCGTCAG GACCTCACCGCGCCCGTGGCCGCCGTGGAGGCGGCCGTCAG < 41bp 1 0.767591409343433 1 0.765760362148285 experiment 0.464817181313134 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75758100 chr10:75758107 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_43830 0 0 1 0 1 VCL chr10:75758133 5'GT 75758133 Upstream 27bp
chr10 75758107 75758107 1 + C G UCEC 75758102 + 75758082 75758122 41 CCTCACCGCGCCCGTGGCCGCCGTGCAGGCGGCCGTCAGCA CCTCACCGCGCCCGTGGCCGCCGTGGAGGCGGCCGTCAGCA < 41bp 1 0.408114145143734 1 0.488912791013718 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75758102 chr10:75758107 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_43831 0 0 1 0 1 VCL chr10:75758133 5'GT 75758133 Upstream 27bp
chr10 75758107 75758107 1 + C G UCEC 75758103 + 75758083 75758123 41 CTCACCGCGCCCGTGGCCGCCGTGCAGGCGGCCGTCAGCAA CTCACCGCGCCCGTGGCCGCCGTGGAGGCGGCCGTCAGCAA < 41bp 1 0.589775784385795 1 0.680960416793823 experiment 0.820448431228411 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75758103 chr10:75758107 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_43832 0 0 1 0 1 VCL chr10:75758133 5'GT 75758133 Upstream 27bp
chr10 75758107 75758107 1 + C G UCEC 75758111 + 75758091 75758131 41 GCCCGTGGCCGCCGTGCAGGCGGCCGTCAGCAACCTCGTCC GCCCGTGGCCGCCGTGGAGGCGGCCGTCAGCAACCTCGTCC < 41bp 1 0.770975681323527 1 0.520806491374969 experiment 0.458048637352946 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75758111 chr10:75758107 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_43833 0 0 1 0 1 VCL chr10:75758133 5'GT 75758133 Upstream 27bp
chr10 75758107 75758107 1 + C G UCEC 75758114 + 75758094 75758134 41 CGTGGCCGCCGTGCAGGCGGCCGTCAGCAACCTCGTCCGGG CGTGGCCGCCGTGGAGGCGGCCGTCAGCAACCTCGTCCGGG < 41bp 1 0.110631433633045 1 0.0477902293205261 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75758114 chr10:75758107 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_43834 0 0 1 0 1 VCL chr10:75758133 5'GT 75758133 Upstream 27bp
chr10 75758107 75758107 1 + C G UCEC 75758115 + 75758095 75758135 41 GTGGCCGCCGTGCAGGCGGCCGTCAGCAACCTCGTCCGGGT GTGGCCGCCGTGGAGGCGGCCGTCAGCAACCTCGTCCGGGT < 41bp 1 0.592218730389703 1 0.204643100500107 experiment 0.815562539220594 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75758115 chr10:75758107 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_43835 0 0 1 0 1 VCL chr10:75758133 5'GT 75758133 Upstream 27bp
chr19 13054584 13054584 1 + G A UCEC 13054566 + 13054546 13054586 41 AGGACAAACAGGACGAGGAGCAGAGGCTTAAGGAGGAGGAA AGGACAAACAGGACGAGGAGCAGAGGCTTAAGGAGGAGAAA < 41bp 1 0.601767457370909 1 0.532667219638824 experiment 0.796465085258182 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALR ENSG00000179218 CDS Human protein_coding chr19:13054566 chr19:13054584 nonsynonymous SNV 0.827 1 39 hm5C_associated_SNPs_43836 0 0 1 0 1 CALR chr19:13054527 3'AG 13054527 Downstream 58bp
chr19 13054584 13054584 1 + G A UCEC 13054572 + 13054552 13054592 41 AACAGGACGAGGAGCAGAGGCTTAAGGAGGAGGAAGAAGAC AACAGGACGAGGAGCAGAGGCTTAAGGAGGAGAAAGAAGAC < 41bp 1 0.575603473395481 1 0.468949824571609 experiment 0.848793053209038 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALR ENSG00000179218 CDS Human protein_coding chr19:13054572 chr19:13054584 nonsynonymous SNV 0.827 1 33 hm5C_associated_SNPs_43837 0 0 1 0 1 CALR chr19:13054527 3'AG 13054527 Downstream 58bp
chr19 13054584 13054584 1 + G A UCEC 13054601 + 13054581 13054621 41 GAGGAAGAAGACAAGAAACGCAAAGAGGAGGAGGAGGCAGA GAGAAAGAAGACAAGAAACGCAAAGAGGAGGAGGAGGCAGA < 41bp 1 0.539213906443825 1 0.584295630455017 experiment 0.921572187112351 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALR ENSG00000179218 CDS Human protein_coding chr19:13054601 chr19:13054584 nonsynonymous SNV 0.827 1 4 hm5C_associated_SNPs_43838 0 0 1 0 1 CALR chr19:13054527 3'AG 13054527 Downstream 58bp
chr11 48164492 48164492 1 + C T UCEC 48164480 + 48164460 48164500 41 TTTTGTTTTAGATCCCCCTCCTCCAGATGGATCCCCTAATA TTTTGTTTTAGATCCCCCTCCTCCAGATGGATTCCCTAATA < 41bp 1 0.455682279875627 1 0.900282323360443 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48164480 chr11:48164492 nonsynonymous SNV 0.999 1 33 hm5C_associated_SNPs_43840 0 0 1 0 1 PTPRJ chr11:48164471 3'AG 48164471 Downstream 22bp
chr6 31602091 31602091 1 + G C UCEC 31602072 + 31602052 31602092 41 TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGA TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGACA < 41bp 1 0.167857561278639 1 0.0419564545154572 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602072 chr6:31602091 nonsynonymous SNV 0.998 1 40 hm5C_associated_SNPs_43841 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 79bp
chr6 31602091 31602091 1 + G C UCEC 31602072 + 31602052 31602092 41 TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGA TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGACA < 41bp 1 0.167857561278639 1 0.0419564545154572 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602072 chr6:31602091 nonsynonymous SNV 0.998 1 40 hm5C_associated_SNPs_43841 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 52bp
chr6 31602091 31602091 1 + G C UCEC 31602073 + 31602053 31602093 41 CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGAT CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGACAT < 41bp 1 0.32246472698891 1 0.0596903264522552 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602073 chr6:31602091 nonsynonymous SNV 0.998 1 39 hm5C_associated_SNPs_43842 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 79bp
chr6 31602091 31602091 1 + G C UCEC 31602073 + 31602053 31602093 41 CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGAT CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGACAT < 41bp 1 0.32246472698891 1 0.0596903264522552 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602073 chr6:31602091 nonsynonymous SNV 0.998 1 39 hm5C_associated_SNPs_43842 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 52bp
chr6 31602091 31602091 1 + G C UCEC 31602074 + 31602054 31602094 41 TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATA TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGACATA < 41bp 1 0.382129509146943 1 0.155278325080872 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602074 chr6:31602091 nonsynonymous SNV 0.998 1 38 hm5C_associated_SNPs_43843 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 79bp
chr6 31602091 31602091 1 + G C UCEC 31602074 + 31602054 31602094 41 TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATA TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGACATA < 41bp 1 0.382129509146943 1 0.155278325080872 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602074 chr6:31602091 nonsynonymous SNV 0.998 1 38 hm5C_associated_SNPs_43843 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 52bp
chr6 31602091 31602091 1 + G C UCEC 31602076 + 31602056 31602096 41 AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACA AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGACATACA < 41bp 1 0.448426737927866 1 0.733695030212402 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602076 chr6:31602091 nonsynonymous SNV 0.998 1 36 hm5C_associated_SNPs_43844 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 79bp
chr6 31602091 31602091 1 + G C UCEC 31602076 + 31602056 31602096 41 AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACA AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGACATACA < 41bp 1 0.448426737927866 1 0.733695030212402 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602076 chr6:31602091 nonsynonymous SNV 0.998 1 36 hm5C_associated_SNPs_43844 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 52bp
chr6 31602091 31602091 1 + G C UCEC 31602080 + 31602060 31602100 41 TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCA TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGACATACAGGCA < 41bp 1 0.411391557511243 1 0.750946998596191 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602080 chr6:31602091 nonsynonymous SNV 0.998 1 32 hm5C_associated_SNPs_43845 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 79bp
chr6 31602091 31602091 1 + G C UCEC 31602080 + 31602060 31602100 41 TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCA TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGACATACAGGCA < 41bp 1 0.411391557511243 1 0.750946998596191 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602080 chr6:31602091 nonsynonymous SNV 0.998 1 32 hm5C_associated_SNPs_43845 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 52bp
chr1 214795537 214795537 1 + G T UCEC 214795520 + 214795500 214795540 41 TTCAAGAACTCCAACTCCAACTGGAGAAAGCAAAAGTGGAA TTCAAGAACTCCAACTCCAACTGGAGAAAGCAAAAGTTGAA < 41bp 1 0.613359130277909 1 0.69642448425293 experiment 0.773281739444183 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214795520 chr1:214795537 synonymous SNV . 0 38 hm5C_associated_SNPs_43846 0 0 1 0 1 CENPF chr1:214795624 5'GT 214795624 Upstream 88bp
chr1 201966463 201966463 1 + A G UCEC 201966479 + 201966459 201966499 41 CTTCATGCCACCGTCCTTTCCATTTGGAGGAATGGAGAACC CTTCGTGCCACCGTCCTTTCCATTTGGAGGAATGGAGAACC < 41bp 1 0.175058875127 1 0.205118089914322 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNPEP ENSG00000176393 CDS Human protein_coding chr1:201966479 chr1:201966463 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_43849 0 0 1 0 1 RNPEP chr1:201966447 3'AG 201966447 Downstream 17bp
chr2 241516064 241516064 1 + C T UCEC 241516046 + 241516026 241516066 41 CTGACCCGGCCCGTGGAGGCCCTTTTCCAGCTGTGGACCGC CTGACCCGGCCCGTGGAGGCCCTTTTCCAGCTGTGGACTGC < 41bp 1 0.038553887724629 1 0.0260923504829407 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241516046 chr2:241516064 synonymous SNV . 0 39 hm5C_associated_SNPs_43850 0 0 0 0 1 RNPEPL1 chr2:241515985 3'AG 241515985 Downstream 80bp
chr2 241516064 241516064 1 + C T UCEC 241516052 + 241516032 241516072 41 CGGCCCGTGGAGGCCCTTTTCCAGCTGTGGACCGCAGAACC CGGCCCGTGGAGGCCCTTTTCCAGCTGTGGACTGCAGAACC < 41bp 1 0.480532122813799 1 0.841246783733368 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241516052 chr2:241516064 synonymous SNV . 0 33 hm5C_associated_SNPs_43851 0 0 0 0 1 RNPEPL1 chr2:241515985 3'AG 241515985 Downstream 80bp
chr11 988605 988605 1 + G A UCEC 988594 + 988574 988614 41 GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGCGACCGC GGCAGCGGGCCGTGGACCTCCTCTACGCCATATGCGACCGC < 41bp 1 0.715795395540478 1 0.531301140785217 experiment 0.568409208919044 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:988594 chr11:988605 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_43852 0 0 1 0 2 AP2A2 chr11:988552 3'AG 988552 Downstream 54bp
chr11 988605 988605 1 + G A UCEC 988594 + 988574 988614 41 GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGCGACCGC GGCAGCGGGCCGTGGACCTCCTCTACGCCATATGCGACCGC < 41bp 1 0.715795395540478 1 0.531301140785217 experiment 0.568409208919044 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:988594 chr11:988605 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_43852 0 0 1 0 2 AP2A2 chr11:988689 5'GT 988689 Upstream 85bp
chr17 7214406 7214406 1 + A G UCEC 7214415 + 7214395 7214435 41 CAACTCATAATATGGATGTCCCCAACATCAAAAGGAATGAC CAACTCATAATGTGGATGTCCCCAACATCAAAAGGAATGAC < 41bp 1 0.288100455013201 1 0.0652668178081512 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214415 chr17:7214406 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_43853 0 0 1 0 2 EIF5A chr17:7214337 3'AG 7214337 Downstream 70bp
chr17 7214406 7214406 1 + A G UCEC 7214415 + 7214395 7214435 41 CAACTCATAATATGGATGTCCCCAACATCAAAAGGAATGAC CAACTCATAATGTGGATGTCCCCAACATCAAAAGGAATGAC < 41bp 1 0.288100455013201 1 0.0652668178081512 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214415 chr17:7214406 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_43853 0 0 1 0 2 EIF5A chr17:7214441 5'GT 7214441 Upstream 36bp
chr17 7214406 7214406 1 + A G UCEC 7214416 + 7214396 7214436 41 AACTCATAATATGGATGTCCCCAACATCAAAAGGAATGACT AACTCATAATGTGGATGTCCCCAACATCAAAAGGAATGACT < 41bp 1 0.0544777274607973 1 0.0951005518436432 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214416 chr17:7214406 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_43854 0 0 1 0 2 EIF5A chr17:7214337 3'AG 7214337 Downstream 70bp
chr17 7214406 7214406 1 + A G UCEC 7214416 + 7214396 7214436 41 AACTCATAATATGGATGTCCCCAACATCAAAAGGAATGACT AACTCATAATGTGGATGTCCCCAACATCAAAAGGAATGACT < 41bp 1 0.0544777274607973 1 0.0951005518436432 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214416 chr17:7214406 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_43854 0 0 1 0 2 EIF5A chr17:7214441 5'GT 7214441 Upstream 36bp
chr9 137021706 137021706 1 + G T UCEC 137021694 + 137021674 137021714 41 TTCAGACGAAAGAGATTGTACAGAAACTACAAGGCCACACA TTCAGACGAAAGAGATTGTACAGAAACTACAATGCCACACA < 41bp 1 0.676395416783829 1 0.511609494686127 experiment 0.647209166432342 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR5 ENSG00000196363 CDS Human protein_coding chr9:137021694 chr9:137021706 nonsynonymous SNV 0.974 1 33 hm5C_associated_SNPs_43856 0 0 1 0 2 WDR5 chr9:137021628 3'AG 137021628 Downstream 79bp
chr9 137021706 137021706 1 + G T UCEC 137021694 + 137021674 137021714 41 TTCAGACGAAAGAGATTGTACAGAAACTACAAGGCCACACA TTCAGACGAAAGAGATTGTACAGAAACTACAATGCCACACA < 41bp 1 0.676395416783829 1 0.511609494686127 experiment 0.647209166432342 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR5 ENSG00000196363 CDS Human protein_coding chr9:137021694 chr9:137021706 nonsynonymous SNV 0.974 1 33 hm5C_associated_SNPs_43856 0 0 1 0 2 WDR5 chr9:137021715 5'GT 137021715 Upstream 10bp
chr3 47046768 47046768 1 + G A UCEC 47046776 + 47046756 47046796 41 TACCTCATCCGCGTGGAGCCCTTCACCTCCCTGCACGTCCA TACCTCATCCGCATGGAGCCCTTCACCTCCCTGCACGTCCA < 41bp 1 0.191748972957394 1 0.131726503372192 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47046776 chr3:47046768 nonsynonymous SNV 0.921 0 13 hm5C_associated_SNPs_43857 0 0 1 0 2 NBEAL2 chr3:47046671 3'AG 47046671 Downstream 98bp
chr3 47046768 47046768 1 + G A UCEC 47046776 + 47046756 47046796 41 TACCTCATCCGCGTGGAGCCCTTCACCTCCCTGCACGTCCA TACCTCATCCGCATGGAGCCCTTCACCTCCCTGCACGTCCA < 41bp 1 0.191748972957394 1 0.131726503372192 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47046776 chr3:47046768 nonsynonymous SNV 0.921 0 13 hm5C_associated_SNPs_43857 0 0 1 0 2 NBEAL2 chr3:47046811 5'GT 47046811 Upstream 44bp
chr7 98591326 98591326 1 + A G UCEC 98591325 + 98591305 98591345 41 CCCTGGAAGGCATCGTCGATCAGATGGTCTGGTTCAGAGAA CCCTGGAAGGCATCGTCGATCGGATGGTCTGGTTCAGAGAA < 41bp 1 0.320765064232394 1 0.418165147304535 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98591325 chr7:98591326 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_43858 0 0 1 0 1 TRRAP chr7:98591360 5'GT 98591360 Upstream 35bp
chr13 113487178 113487178 1 + G A UCEC 113487177 + 113487157 113487197 41 GAACTGCTTTTTTATAGGAGCGCGAGGAGCTGTTTTTCCGG GAACTGCTTTTTTATAGGAGCACGAGGAGCTGTTTTTCCGG < 41bp 1 0.622262269986905 1 0.361166089773178 experiment 0.75547546002619 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP11A ENSG00000068650 CDS Human protein_coding chr13:113487177 chr13:113487178 nonsynonymous SNV 0.037 1 22 hm5C_associated_SNPs_43859 0 0 1 0 1 ATP11A chr13:113487174 3'AG 113487174 Downstream 5bp
chr17 4797344 4797344 1 + G A UCEC 4797353 + 4797333 4797373 41 AGGAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACC AGGAGATCACCAGGACCCAGCCCCCATACGGGGGCGGCACC < 41bp 1 0.0630273339877988 1 0.0883751213550568 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797353 chr17:4797344 nonsynonymous SNV 0.646 1 12 hm5C_associated_SNPs_43860 0 0 1 0 2 MINK1 chr17:4797283 3'AG 4797283 Downstream 62bp
chr17 4797344 4797344 1 + G A UCEC 4797353 + 4797333 4797373 41 AGGAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACC AGGAGATCACCAGGACCCAGCCCCCATACGGGGGCGGCACC < 41bp 1 0.0630273339877988 1 0.0883751213550568 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797353 chr17:4797344 nonsynonymous SNV 0.646 1 12 hm5C_associated_SNPs_43860 0 0 1 0 2 MINK1 chr17:4797388 5'GT 4797388 Upstream 45bp
chr17 4797344 4797344 1 + G A UCEC 4797354 + 4797334 4797374 41 GGAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCA GGAGATCACCAGGACCCAGCCCCCATACGGGGGCGGCACCA < 41bp 1 0.487118154570888 1 0.852003931999207 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797354 chr17:4797344 nonsynonymous SNV 0.646 1 11 hm5C_associated_SNPs_43861 0 0 1 0 2 MINK1 chr17:4797283 3'AG 4797283 Downstream 62bp
chr17 4797344 4797344 1 + G A UCEC 4797354 + 4797334 4797374 41 GGAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCA GGAGATCACCAGGACCCAGCCCCCATACGGGGGCGGCACCA < 41bp 1 0.487118154570888 1 0.852003931999207 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797354 chr17:4797344 nonsynonymous SNV 0.646 1 11 hm5C_associated_SNPs_43861 0 0 1 0 2 MINK1 chr17:4797388 5'GT 4797388 Upstream 45bp
chr17 4797344 4797344 1 + G A UCEC 4797355 + 4797335 4797375 41 GAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCAT GAGATCACCAGGACCCAGCCCCCATACGGGGGCGGCACCAT < 41bp 1 0.0629304491726652 1 0.238038331270218 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797355 chr17:4797344 nonsynonymous SNV 0.646 1 10 hm5C_associated_SNPs_43862 0 0 1 0 2 MINK1 chr17:4797283 3'AG 4797283 Downstream 62bp
chr17 4797344 4797344 1 + G A UCEC 4797355 + 4797335 4797375 41 GAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCAT GAGATCACCAGGACCCAGCCCCCATACGGGGGCGGCACCAT < 41bp 1 0.0629304491726652 1 0.238038331270218 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797355 chr17:4797344 nonsynonymous SNV 0.646 1 10 hm5C_associated_SNPs_43862 0 0 1 0 2 MINK1 chr17:4797388 5'GT 4797388 Upstream 45bp
chr17 4797344 4797344 1 + G A UCEC 4797356 + 4797336 4797376 41 AGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCATG AGATCACCAGGACCCAGCCCCCATACGGGGGCGGCACCATG < 41bp 1 0.0758188898327105 1 0.164766281843185 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797356 chr17:4797344 nonsynonymous SNV 0.646 1 9 hm5C_associated_SNPs_43863 0 0 1 0 2 MINK1 chr17:4797283 3'AG 4797283 Downstream 62bp
chr17 4797344 4797344 1 + G A UCEC 4797356 + 4797336 4797376 41 AGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCATG AGATCACCAGGACCCAGCCCCCATACGGGGGCGGCACCATG < 41bp 1 0.0758188898327105 1 0.164766281843185 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797356 chr17:4797344 nonsynonymous SNV 0.646 1 9 hm5C_associated_SNPs_43863 0 0 1 0 2 MINK1 chr17:4797388 5'GT 4797388 Upstream 45bp
chr17 4797344 4797344 1 + G A UCEC 4797357 + 4797337 4797377 41 GATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCATGG GATCACCAGGACCCAGCCCCCATACGGGGGCGGCACCATGG < 41bp 1 0.121066748955881 1 0.182424545288086 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797357 chr17:4797344 nonsynonymous SNV 0.646 1 8 hm5C_associated_SNPs_43864 0 0 1 0 2 MINK1 chr17:4797283 3'AG 4797283 Downstream 62bp
chr17 4797344 4797344 1 + G A UCEC 4797357 + 4797337 4797377 41 GATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCATGG GATCACCAGGACCCAGCCCCCATACGGGGGCGGCACCATGG < 41bp 1 0.121066748955881 1 0.182424545288086 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797357 chr17:4797344 nonsynonymous SNV 0.646 1 8 hm5C_associated_SNPs_43864 0 0 1 0 2 MINK1 chr17:4797388 5'GT 4797388 Upstream 45bp
chr12 72274326 72274326 1 + C T UCEC 72274307 + 72274287 72274327 41 AGAAAGAGGTCATCGAGGATCAGAACATCTGAACAGTTACG AGAAAGAGGTCATCGAGGATCAGAACATCTGAACAGTTATG < 41bp 1 0.720171366461153 1 0.545698463916779 experiment 0.559657267077693 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72274307 chr12:72274326 synonymous SNV . 0 40 hm5C_associated_SNPs_43866 0 0 1 0 2 TBC1D15 chr12:72274249 3'AG 72274249 Downstream 78bp
chr12 72274326 72274326 1 + C T UCEC 72274307 + 72274287 72274327 41 AGAAAGAGGTCATCGAGGATCAGAACATCTGAACAGTTACG AGAAAGAGGTCATCGAGGATCAGAACATCTGAACAGTTATG < 41bp 1 0.720171366461153 1 0.545698463916779 experiment 0.559657267077693 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72274307 chr12:72274326 synonymous SNV . 0 40 hm5C_associated_SNPs_43866 0 0 1 0 2 TBC1D15 chr12:72274387 5'GT 72274387 Upstream 62bp
chr6 44116545 44116545 1 + C T UCEC 44116536 + 44116516 44116556 41 CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTCATC CCCACCTTGCCAGGGAGCACCTCTCCATCTGAGGCTTCATC < 41bp 1 0.0811494497716061 1 0.280007869005203 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116536 chr6:44116545 stopgain 1.000 1 30 hm5C_associated_SNPs_43867 0 0 1 3 1 TMEM63B chr6:44116529 3'AG 44116529 Downstream 17bp
chr5 179151705 179151705 1 + G A UCEC 179151689 + 179151669 179151709 41 TGGTATGGAGTATAAGAAAACTGATGCACCTCAACCGGATG TGGTATGGAGTATAAGAAAACTGATGCACCTCAACCAGATG < 41bp 1 0.450762662658505 1 0.334704428911209 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151689 chr5:179151705 synonymous SNV . 0 37 hm5C_associated_SNPs_43868 0 0 1 0 2 CANX chr5:179151658 3'AG 179151658 Downstream 48bp
chr5 179151705 179151705 1 + G A UCEC 179151689 + 179151669 179151709 41 TGGTATGGAGTATAAGAAAACTGATGCACCTCAACCGGATG TGGTATGGAGTATAAGAAAACTGATGCACCTCAACCAGATG < 41bp 1 0.450762662658505 1 0.334704428911209 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151689 chr5:179151705 synonymous SNV . 0 37 hm5C_associated_SNPs_43868 0 0 1 0 2 CANX chr5:179151784 5'GT 179151784 Upstream 80bp
chr5 179151705 179151705 1 + G A UCEC 179151698 + 179151678 179151718 41 GTATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAG GTATAAGAAAACTGATGCACCTCAACCAGATGTGAAGGAAG < 41bp 1 0.50177254107951 1 0.617846131324768 experiment 0.996454917840979 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151698 chr5:179151705 synonymous SNV . 0 28 hm5C_associated_SNPs_43869 0 0 1 0 2 CANX chr5:179151658 3'AG 179151658 Downstream 48bp
chr5 179151705 179151705 1 + G A UCEC 179151698 + 179151678 179151718 41 GTATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAG GTATAAGAAAACTGATGCACCTCAACCAGATGTGAAGGAAG < 41bp 1 0.50177254107951 1 0.617846131324768 experiment 0.996454917840979 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151698 chr5:179151705 synonymous SNV . 0 28 hm5C_associated_SNPs_43869 0 0 1 0 2 CANX chr5:179151784 5'GT 179151784 Upstream 80bp
chr5 179151705 179151705 1 + G A UCEC 179151700 + 179151680 179151720 41 ATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAG ATAAGAAAACTGATGCACCTCAACCAGATGTGAAGGAAGAG < 41bp 1 0.209983901085618 1 0.235217481851578 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151700 chr5:179151705 synonymous SNV . 0 26 hm5C_associated_SNPs_43870 0 0 1 0 2 CANX chr5:179151658 3'AG 179151658 Downstream 48bp
chr5 179151705 179151705 1 + G A UCEC 179151700 + 179151680 179151720 41 ATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAG ATAAGAAAACTGATGCACCTCAACCAGATGTGAAGGAAGAG < 41bp 1 0.209983901085618 1 0.235217481851578 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151700 chr5:179151705 synonymous SNV . 0 26 hm5C_associated_SNPs_43870 0 0 1 0 2 CANX chr5:179151784 5'GT 179151784 Upstream 80bp
chr5 179151705 179151705 1 + G A UCEC 179151704 + 179151684 179151724 41 GAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAGGAAG GAAAACTGATGCACCTCAACCAGATGTGAAGGAAGAGGAAG < 41bp 1 0.494210131373283 1 0.71641343832016 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151704 chr5:179151705 synonymous SNV . 0 22 hm5C_associated_SNPs_43871 0 0 1 0 2 CANX chr5:179151658 3'AG 179151658 Downstream 48bp
chr5 179151705 179151705 1 + G A UCEC 179151704 + 179151684 179151724 41 GAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAGGAAG GAAAACTGATGCACCTCAACCAGATGTGAAGGAAGAGGAAG < 41bp 1 0.494210131373283 1 0.71641343832016 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151704 chr5:179151705 synonymous SNV . 0 22 hm5C_associated_SNPs_43871 0 0 1 0 2 CANX chr5:179151784 5'GT 179151784 Upstream 80bp
chr19 50728934 50728934 1 + C T UCEC 50728929 + 50728909 50728949 41 TGAAGAATGACAACTCCTCCCGATTCGTGAGTGCCAGGGGT TGAAGAATGACAACTCCTCCCGATTTGTGAGTGCCAGGGGT < 41bp 1 0.109123117310498 1 0.204719394445419 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50728929 chr19:50728934 synonymous SNV . 0 26 hm5C_associated_SNPs_43872 1 0 0 0 1 MYH14 chr19:50728934 5'GT 50728934 Upstream 1bp
chr22 39078405 39078405 1 + C A UCEC 39078388 + 39078368 39078408 41 AGATGTTTCCGGAGAGGGTCCGGTCCGCGGCCGGAGCCACT AGATGTTTCCGGAGAGGGTCCGGTCCGCGGCCGGAGCAACT < 41bp 1 0.33043520831703 1 0.542656540870667 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078388 chr22:39078405 synonymous SNV . 0 38 hm5C_associated_SNPs_43873 0 0 1 0 2 TOMM22 chr22:39078328 3'AG 39078328 Downstream 78bp
chr22 39078405 39078405 1 + C A UCEC 39078388 + 39078368 39078408 41 AGATGTTTCCGGAGAGGGTCCGGTCCGCGGCCGGAGCCACT AGATGTTTCCGGAGAGGGTCCGGTCCGCGGCCGGAGCAACT < 41bp 1 0.33043520831703 1 0.542656540870667 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078388 chr22:39078405 synonymous SNV . 0 38 hm5C_associated_SNPs_43873 0 0 1 0 2 TOMM22 chr22:39078446 5'GT 39078446 Upstream 42bp
chr9 130420676 130420676 1 + C T UCEC 130420683 + 130420663 130420703 41 ATATCAATAAGCGCAGAGAGCCGCTCCCCAGCCTGGAGGCT ATATCAATAAGCGTAGAGAGCCGCTCCCCAGCCTGGAGGCT < 41bp 1 0.10651547589185 1 0.0682820081710815 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130420683 chr9:130420676 synonymous SNV . 0 14 hm5C_associated_SNPs_43874 0 0 1 0 2 STXBP1 chr9:130420654 3'AG 130420654 Downstream 23bp
chr9 130420676 130420676 1 + C T UCEC 130420683 + 130420663 130420703 41 ATATCAATAAGCGCAGAGAGCCGCTCCCCAGCCTGGAGGCT ATATCAATAAGCGTAGAGAGCCGCTCCCCAGCCTGGAGGCT < 41bp 1 0.10651547589185 1 0.0682820081710815 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130420683 chr9:130420676 synonymous SNV . 0 14 hm5C_associated_SNPs_43874 0 0 1 0 2 STXBP1 chr9:130420730 5'GT 130420730 Upstream 55bp
chr1 45279383 45279383 1 + G A UCEC 45279398 + 45279378 45279418 41 GTGTCGCCGCCGGAGAGGCACCCTGCCCCGGGAGCATCACC GTGTCACCGCCGGAGAGGCACCCTGCCCCGGGAGCATCACC < 41bp 1 0.169866587530943 1 0.0596871078014374 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BTBD19 ENSG00000222009 CDS Human protein_coding chr1:45279398 chr1:45279383 nonsynonymous SNV 0.941 1 6 hm5C_associated_SNPs_43875 0 0 1 0 1 BTBD19 chr1:45279310 3'AG 45279310 Downstream 74bp
chr22 38282851 38282851 1 + A G UCEC 38282832 + 38282812 38282852 41 ATGGGGATTTCTTCATCCGTCAGATCCACAAATTTGAGGAG ATGGGGATTTCTTCATCCGTCAGATCCACAAATTTGAGGGG < 41bp 1 0.393745926030548 1 0.757546424865723 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3L ENSG00000100129 CDS Human protein_coding chr22:38282832 chr22:38282851 nonsynonymous SNV 0.996 3 40 hm5C_associated_SNPs_43878 0 0 1 0 2 EIF3L chr22:38282772 3'AG 38282772 Downstream 80bp
chr22 38282851 38282851 1 + A G UCEC 38282832 + 38282812 38282852 41 ATGGGGATTTCTTCATCCGTCAGATCCACAAATTTGAGGAG ATGGGGATTTCTTCATCCGTCAGATCCACAAATTTGAGGGG < 41bp 1 0.393745926030548 1 0.757546424865723 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3L ENSG00000100129 CDS Human protein_coding chr22:38282832 chr22:38282851 nonsynonymous SNV 0.996 3 40 hm5C_associated_SNPs_43878 0 0 1 0 2 EIF3L chr22:38282852 5'GT 38282852 Upstream 2bp
chr3 193336665 193336665 1 + G A UCEC 193336676 + 193336656 193336696 41 AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATCGTG AGGTTCTCCAGAAGAAACGGCGTTTAGAGCAACAGATCGTG < 41bp 1 0.0401440114838721 1 0.0357896685600281 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336676 chr3:193336665 synonymous SNV . 0 10 hm5C_associated_SNPs_43880 0 0 1 0 2 OPA1 chr3:193336658 3'AG 193336658 Downstream 8bp
chr3 193336665 193336665 1 + G A UCEC 193336676 + 193336656 193336696 41 AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATCGTG AGGTTCTCCAGAAGAAACGGCGTTTAGAGCAACAGATCGTG < 41bp 1 0.0401440114838721 1 0.0357896685600281 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336676 chr3:193336665 synonymous SNV . 0 10 hm5C_associated_SNPs_43880 0 0 1 0 2 OPA1 chr3:193336725 5'GT 193336725 Upstream 61bp
chr19 1440432 1440432 1 + C A UCEC 1440440 + 1440420 1440460 41 ATCGGGGCCACCCACTCCTCCCGCTTCATCCCTCTCAAGTA ATCGGGGCCACCAACTCCTCCCGCTTCATCCCTCTCAAGTA < 41bp 1 0.21522351824686 1 0.164587795734406 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS15 ENSG00000115268 CDS Human protein_coding chr19:1440440 chr19:1440432 nonsynonymous SNV 0.828 0 13 hm5C_associated_SNPs_43881 0 0 1 0 1 RPS15 chr19:1440348 3'AG 1440348 Downstream 85bp
chr19 1440432 1440432 1 + C A UCEC 1440441 + 1440421 1440461 41 TCGGGGCCACCCACTCCTCCCGCTTCATCCCTCTCAAGTAA TCGGGGCCACCAACTCCTCCCGCTTCATCCCTCTCAAGTAA < 41bp 1 0.2695617588925 1 0.362597435712814 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS15 ENSG00000115268 CDS Human protein_coding chr19:1440441 chr19:1440432 nonsynonymous SNV 0.828 0 12 hm5C_associated_SNPs_43882 0 0 1 0 1 RPS15 chr19:1440348 3'AG 1440348 Downstream 85bp
chr8 100182348 100182348 1 + A G UCEC 100182330 + 100182310 100182350 41 GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAGC GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCGGC < 41bp 1 0.0892186244707443 1 0.120890200138092 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100182330 chr8:100182348 nonsynonymous SNV 0.998 3 39 hm5C_associated_SNPs_43883 0 0 1 0 2 VPS13B chr8:100182267 3'AG 100182267 Downstream 82bp
chr8 100182348 100182348 1 + A G UCEC 100182330 + 100182310 100182350 41 GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAGC GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCGGC < 41bp 1 0.0892186244707443 1 0.120890200138092 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100182330 chr8:100182348 nonsynonymous SNV 0.998 3 39 hm5C_associated_SNPs_43883 0 0 1 0 2 VPS13B chr8:100182391 5'GT 100182391 Upstream 44bp
chr20 32664984 32664984 1 + A G UCEC 32664995 + 32664975 32665015 41 GCCTGCCCCAGGGGGAAGCACGGACCCGAGACGACGGCGAT GCCTGCCCCGGGGGGAAGCACGGACCCGAGACGACGGCGAT < 41bp 1 0.483249954764315 1 0.726381480693817 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32664995 chr20:32664984 nonsynonymous SNV 0.025 2 10 hm5C_associated_SNPs_43884 0 0 1 0 1 RALY chr20:32665051 5'GT 32665051 Upstream 68bp
chr20 32664984 32664984 1 + A G UCEC 32664999 + 32664979 32665019 41 GCCCCAGGGGGAAGCACGGACCCGAGACGACGGCGATGAGG GCCCCGGGGGGAAGCACGGACCCGAGACGACGGCGATGAGG < 41bp 1 0.776633334825681 1 0.420314192771912 experiment 0.446733330348638 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32664999 chr20:32664984 nonsynonymous SNV 0.025 2 6 hm5C_associated_SNPs_43885 0 0 1 0 1 RALY chr20:32665051 5'GT 32665051 Upstream 68bp
chr20 32664984 32664984 1 + A G UCEC 32665000 + 32664980 32665020 41 CCCCAGGGGGAAGCACGGACCCGAGACGACGGCGATGAGGA CCCCGGGGGGAAGCACGGACCCGAGACGACGGCGATGAGGA < 41bp 1 0.364614591085529 1 0.555648565292358 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32665000 chr20:32664984 nonsynonymous SNV 0.025 2 5 hm5C_associated_SNPs_43886 0 0 1 0 1 RALY chr20:32665051 5'GT 32665051 Upstream 68bp
chr5 92921104 92921104 1 + C T UCEC 92921110 + 92921090 92921130 41 ACATGCCGTGCCAACAGGAACTGTCCCATCGACCAGCACCA ACATGCCGTGCCAATAGGAACTGTCCCATCGACCAGCACCA < 41bp 1 0.0910603312061804 1 0.128621280193329 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NR2F1 ENSG00000175745 CDS Human protein_coding chr5:92921110 chr5:92921104 synonymous SNV . 0 15 hm5C_associated_SNPs_43887 0 0 1 0 1 NR2F1 chr5:92921192 5'GT 92921192 Upstream 89bp
chr18 77802175 77802175 1 + C T UCEC 77802159 + 77802139 77802179 41 CTTTTGATGTCCCAGCAGACCCTGAGGAATGTGCCACCGAT CTTTTGATGTCCCAGCAGACCCTGAGGAATGTGCCATCGAT < 41bp 1 0.470126009078575 1 0.163528144359589 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBFA ENSG00000101546 CDS Human protein_coding chr18:77802159 chr18:77802175 nonsynonymous SNV 0.045 1 37 hm5C_associated_SNPs_43888 0 0 1 0 2 RBFA chr18:77802135 3'AG 77802135 Downstream 41bp
chr18 77802175 77802175 1 + C T UCEC 77802159 + 77802139 77802179 41 CTTTTGATGTCCCAGCAGACCCTGAGGAATGTGCCACCGAT CTTTTGATGTCCCAGCAGACCCTGAGGAATGTGCCATCGAT < 41bp 1 0.470126009078575 1 0.163528144359589 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBFA ENSG00000101546 CDS Human protein_coding chr18:77802159 chr18:77802175 nonsynonymous SNV 0.045 1 37 hm5C_associated_SNPs_43888 0 0 1 0 2 RBFA chr18:77802219 5'GT 77802219 Upstream 45bp
chr16 31476130 31476130 1 + C T UCEC 31476110 + 31476090 31476130 41 CTTCGTGCGCAGCTATGGCGCGGCGCTGCTGCGGGCCTGGC CTTCGTGCGCAGCTATGGCGCGGCGCTGCTGCGGGCCTGGT < 41bp 1 0.789871029751802 1 0.561599493026733 experiment 0.420257940496397 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARMC5 ENSG00000140691 CDS Human protein_coding chr16:31476110 chr16:31476130 synonymous SNV . 0 41 hm5C_associated_SNPs_43889 0 0 0 0 1 ARMC5 chr16:31476208 5'GT 31476208 Upstream 79bp
chr19 39125658 39125658 1 + C T UCEC 39125664 + 39125644 39125684 41 AAGGTGTGGATGAGCAAATACGGCTGGAGTGCCGACGAGTC AAGGTGTGGATGAGTAAATACGGCTGGAGTGCCGACGAGTC < 41bp 1 0.730706075603326 1 0.35601282119751 experiment 0.538587848793348 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39125664 chr19:39125658 synonymous SNV . 0 15 hm5C_associated_SNPs_43890 0 0 1 0 1 EIF3K chr19:39125633 3'AG 39125633 Downstream 26bp
chr19 39125658 39125658 1 + C T UCEC 39125675 + 39125655 39125695 41 GAGCAAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATCT GAGTAAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATCT < 41bp 1 0.241397922529133 1 0.409604787826538 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39125675 chr19:39125658 synonymous SNV . 0 4 hm5C_associated_SNPs_43891 0 0 1 0 1 EIF3K chr19:39125633 3'AG 39125633 Downstream 26bp
chr1 180034363 180034363 1 + C T UCEC 180034360 + 180034340 180034380 41 ATCTCCAGCAGTGAAACTAGCAGCATTATGCAGAAACTGAA ATCTCCAGCAGTGAAACTAGCAGTATTATGCAGAAACTGAA < 41bp 1 0.361856372694777 1 0.104857474565506 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180034360 chr1:180034363 synonymous SNV . 0 24 hm5C_associated_SNPs_43892 0 0 1 0 1 CEP350 chr1:180034407 5'GT 180034407 Upstream 45bp
chr5 34929981 34929981 1 + C T UCEC 34929965 + 34929945 34929985 41 GCTGGGGGTGCGGCGCGACGCCAGCGAGGAGGAGCTCAAGA GCTGGGGGTGCGGCGCGACGCCAGCGAGGAGGAGCTTAAGA < 41bp 1 0.623846038877604 1 0.46982616186142 experiment 0.752307922244791 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34929965 chr5:34929981 synonymous SNV . 0 37 hm5C_associated_SNPs_43893 0 0 1 0 1 DNAJC21 chr5:34930021 5'GT 34930021 Upstream 41bp
chr17 28712044 28712044 1 + G A UCEC 28712048 + 28712028 28712068 41 GCATGGTGGCTCAGTGGTAGCAAGCTATCCTTTTGATGATT GCATGGTGGCTCAGTGATAGCAAGCTATCCTTTTGATGATT < 41bp 1 0.478463616533444 1 0.328896284103394 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28712048 chr17:28712044 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_43896 0 0 1 0 1 CPD chr17:28712007 3'AG 28712007 Downstream 38bp
chr9 71851981 71851981 1 + G A UCEC 71851967 + 71851947 71851987 41 AGGTCTGGGGTGAAGAAGAACCTGAGGAAAAGTCGGGAAGA AGGTCTGGGGTGAAGAAGAACCTGAGGAAAAGTCAGGAAGA < 41bp 1 0.43619529996068 1 0.353593647480011 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TJP2 ENSG00000119139 CDS Human protein_coding chr9:71851967 chr9:71851981 nonsynonymous SNV 0.997 4 35 hm5C_associated_SNPs_43899 0 0 1 0 1 TJP2 chr9:71852052 5'GT 71852052 Upstream 72bp
chr9 71851981 71851981 1 + G A UCEC 71851968 + 71851948 71851988 41 GGTCTGGGGTGAAGAAGAACCTGAGGAAAAGTCGGGAAGAC GGTCTGGGGTGAAGAAGAACCTGAGGAAAAGTCAGGAAGAC < 41bp 1 0.756323846974905 1 0.670404016971588 experiment 0.48735230605019 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TJP2 ENSG00000119139 CDS Human protein_coding chr9:71851968 chr9:71851981 nonsynonymous SNV 0.997 4 34 hm5C_associated_SNPs_43900 0 0 1 0 1 TJP2 chr9:71852052 5'GT 71852052 Upstream 72bp
chr17 40766007 40766007 1 + G A UCEC 40765994 + 40765974 40766014 41 CTTCCTCATGACCGGCTACACCCCTCTCACTACGGACCAGT CTTCCTCATGACCGGCTACACCCCTCTCACTACAGACCAGT < 41bp 1 0.165901418311342 1 0.0427419543266296 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG1 ENSG00000131462 CDS Human protein_coding chr17:40765994 chr17:40766007 synonymous SNV . 0 34 hm5C_associated_SNPs_43901 0 0 1 0 1 TUBG1 chr17:40766016 5'GT 40766016 Upstream 10bp
chr15 64429090 64429090 1 + G A UCEC 64429070 + 64429050 64429090 41 TGTCTCCTAGAAAGAGAAATCCAAGGACTTCAAGAACCACG TGTCTCCTAGAAAGAGAAATCCAAGGACTTCAAGAACCACA < 41bp 1 0.140955871417489 1 0.337111473083496 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64429070 chr15:64429090 nonsynonymous SNV 0.987 4 41 hm5C_associated_SNPs_43904 0 0 1 0 2 SNX1 chr15:64429060 3'AG 64429060 Downstream 31bp
chr15 64429090 64429090 1 + G A UCEC 64429070 + 64429050 64429090 41 TGTCTCCTAGAAAGAGAAATCCAAGGACTTCAAGAACCACG TGTCTCCTAGAAAGAGAAATCCAAGGACTTCAAGAACCACA < 41bp 1 0.140955871417489 1 0.337111473083496 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64429070 chr15:64429090 nonsynonymous SNV 0.987 4 41 hm5C_associated_SNPs_43904 0 0 1 0 2 SNX1 chr15:64429131 5'GT 64429131 Upstream 42bp
chr12 64814295 64814295 1 + T C UCEC 64814299 + 64814279 64814319 41 CTGGGTTTTTCAGCATTGACCAGGTTGGTAAATTTATATAA CTGGGTTTTTCAGCATCGACCAGGTTGGTAAATTTATATAA < 41bp 1 0.477513132765199 1 0.826928317546844 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control XPOT ENSG00000184575 CDS Human protein_coding chr12:64814299 chr12:64814295 synonymous SNV . 0 17 hm5C_associated_SNPs_43905 0 0 1 0 1 XPOT chr12:64814301 5'GT 64814301 Upstream 7bp
chr2 27438251 27438251 1 + C G UCEC 27438244 + 27438224 27438264 41 GTCCAAACTTTCATCAGGCACATACCACTGTCATCATGTAA GTCCAAACTTTCATCAGGCACATACCAGTGTCATCATGTAA < 41bp 1 0.0590021536504094 1 0.075777679681778 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATRAID ENSG00000138085 CDS Human protein_coding chr2:27438244 chr2:27438251 nonsynonymous SNV 0.442 0 28 hm5C_associated_SNPs_43906 0 0 1 0 2 ATRAID chr2:27438189 3'AG 27438189 Downstream 63bp
chr2 27438251 27438251 1 + C G UCEC 27438244 + 27438224 27438264 41 GTCCAAACTTTCATCAGGCACATACCACTGTCATCATGTAA GTCCAAACTTTCATCAGGCACATACCAGTGTCATCATGTAA < 41bp 1 0.0590021536504094 1 0.075777679681778 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATRAID ENSG00000138085 CDS Human protein_coding chr2:27438244 chr2:27438251 nonsynonymous SNV 0.442 0 28 hm5C_associated_SNPs_43906 0 0 1 0 2 ATRAID chr2:27438260 5'GT 27438260 Upstream 10bp
chr19 48259809 48259809 1 + C T UCEC 48259799 + 48259779 48259819 41 CTGTAGCCCGAGGGCAACATCCTTCGAGACCGGTTCAAGAG CTGTAGCCCGAGGGCAACATCCTTCGAGACTGGTTCAAGAG < 41bp 1 0.0424848185497648 1 0.136503010988235 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259799 chr19:48259809 nonsynonymous SNV 0.711 2 31 hm5C_associated_SNPs_43907 0 0 1 0 2 NOP53 chr19:48259785 3'AG 48259785 Downstream 25bp
chr19 48259809 48259809 1 + C T UCEC 48259799 + 48259779 48259819 41 CTGTAGCCCGAGGGCAACATCCTTCGAGACCGGTTCAAGAG CTGTAGCCCGAGGGCAACATCCTTCGAGACTGGTTCAAGAG < 41bp 1 0.0424848185497648 1 0.136503010988235 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259799 chr19:48259809 nonsynonymous SNV 0.711 2 31 hm5C_associated_SNPs_43907 0 0 1 0 2 NOP53 chr19:48259861 5'GT 48259861 Upstream 53bp
chr19 48259809 48259809 1 + C T UCEC 48259803 + 48259783 48259823 41 AGCCCGAGGGCAACATCCTTCGAGACCGGTTCAAGAGCTTC AGCCCGAGGGCAACATCCTTCGAGACTGGTTCAAGAGCTTC < 41bp 1 0.788574782507649 1 0.766736626625061 experiment 0.422850434984701 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259803 chr19:48259809 nonsynonymous SNV 0.711 2 27 hm5C_associated_SNPs_43908 0 0 1 0 2 NOP53 chr19:48259785 3'AG 48259785 Downstream 25bp
chr19 48259809 48259809 1 + C T UCEC 48259803 + 48259783 48259823 41 AGCCCGAGGGCAACATCCTTCGAGACCGGTTCAAGAGCTTC AGCCCGAGGGCAACATCCTTCGAGACTGGTTCAAGAGCTTC < 41bp 1 0.788574782507649 1 0.766736626625061 experiment 0.422850434984701 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259803 chr19:48259809 nonsynonymous SNV 0.711 2 27 hm5C_associated_SNPs_43908 0 0 1 0 2 NOP53 chr19:48259861 5'GT 48259861 Upstream 53bp
chr17 28958936 28958936 1 + C T UCEC 28958929 + 28958909 28958949 41 TGGGAGTGAGCAGCTAGACACCAATGACGAGAGTGATGTTA TGGGAGTGAGCAGCTAGACACCAATGATGAGAGTGATGTTA < 41bp 1 0.116163714380191 1 0.0689842402935028 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LOC107133515 ENSG00000214719;ENSG00000250462 ncRNA_exonic Human other chr17:28958929 chr17:28958936 . . 0 28 hm5C_associated_SNPs_43909 0 0 1 0 2 LOC107133515 chr17:28958945 5'GT 28958945 Upstream 10bp
chr17 28958936 28958936 1 + C T UCEC 28958929 + 28958909 28958949 41 TGGGAGTGAGCAGCTAGACACCAATGACGAGAGTGATGTTA TGGGAGTGAGCAGCTAGACACCAATGATGAGAGTGATGTTA < 41bp 1 0.116163714380191 1 0.0689842402935028 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LOC107133515 ENSG00000214719;ENSG00000250462 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:28958929 chr17:28958936 . . 0 28 hm5C_associated_SNPs_43909 0 0 1 0 2 LOC107133515 chr17:28958997 5'GT 28958997 Upstream 62bp
chr20 25205883 25205883 1 + C G UCEC 25205875 + 25205855 25205895 41 GAGACACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT GAGACACAGCCGCAGAGCAGCCCCTTCTGATGCATGGACCT < 41bp 1 0.188946519320321 1 0.0639784038066864 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25205875 chr20:25205883 stopgain 0.003 0 29 hm5C_associated_SNPs_43913 0 0 1 0 3 ENTPD6 chr20:25205798 3'AG 25205798 Downstream 86bp
chr20 25205883 25205883 1 + C G UCEC 25205875 + 25205855 25205895 41 GAGACACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT GAGACACAGCCGCAGAGCAGCCCCTTCTGATGCATGGACCT < 41bp 1 0.188946519320321 1 0.0639784038066864 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25205875 chr20:25205883 stopgain 0.003 0 29 hm5C_associated_SNPs_43913 0 0 1 0 3 ENTPD6 chr20:25205841 3'AG 25205841 Downstream 43bp
chr20 25205883 25205883 1 + C G UCEC 25205875 + 25205855 25205895 41 GAGACACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT GAGACACAGCCGCAGAGCAGCCCCTTCTGATGCATGGACCT < 41bp 1 0.188946519320321 1 0.0639784038066864 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25205875 chr20:25205883 stopgain 0.003 0 29 hm5C_associated_SNPs_43913 0 0 1 0 3 ENTPD6 chr20:25205953 5'GT 25205953 Upstream 71bp
chr2 109347900 109347900 1 + C T UCEC 109347887 + 109347867 109347907 41 AAAATACTGGCTTGAAAGAGCAGCCAAACTTTTCCCAGGAA AAAATACTGGCTTGAAAGAGCAGCCAAACTTTTTCCAGGAA < 41bp 1 0.200019263858789 1 0.496517419815063 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347887 chr2:109347900 synonymous SNV . 0 34 hm5C_associated_SNPs_43914 0 0 1 0 1 RANBP2 chr2:109347930 5'GT 109347930 Upstream 31bp
chr2 109347900 109347900 1 + C T UCEC 109347890 + 109347870 109347910 41 ATACTGGCTTGAAAGAGCAGCCAAACTTTTCCCAGGAAGTC ATACTGGCTTGAAAGAGCAGCCAAACTTTTTCCAGGAAGTC < 41bp 1 0.0680981857527072 1 0.263365596532822 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347890 chr2:109347900 synonymous SNV . 0 31 hm5C_associated_SNPs_43915 0 0 1 0 1 RANBP2 chr2:109347930 5'GT 109347930 Upstream 31bp
chr2 109347900 109347900 1 + C T UCEC 109347895 + 109347875 109347915 41 GGCTTGAAAGAGCAGCCAAACTTTTCCCAGGAAGTCCTGCA GGCTTGAAAGAGCAGCCAAACTTTTTCCAGGAAGTCCTGCA < 41bp 1 0.0688399140034049 1 0.0366297662258148 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347895 chr2:109347900 synonymous SNV . 0 26 hm5C_associated_SNPs_43916 0 0 1 0 1 RANBP2 chr2:109347930 5'GT 109347930 Upstream 31bp
chr2 109347900 109347900 1 + C T UCEC 109347901 + 109347881 109347921 41 AAAGAGCAGCCAAACTTTTCCCAGGAAGTCCTGCAATTTAT AAAGAGCAGCCAAACTTTTTCCAGGAAGTCCTGCAATTTAT < 41bp 1 0.318793693909242 1 0.529546320438385 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347901 chr2:109347900 synonymous SNV . 0 20 hm5C_associated_SNPs_43917 0 0 1 0 1 RANBP2 chr2:109347930 5'GT 109347930 Upstream 31bp
chr2 109347900 109347900 1 + C T UCEC 109347902 + 109347882 109347922 41 AAGAGCAGCCAAACTTTTCCCAGGAAGTCCTGCAATTTATA AAGAGCAGCCAAACTTTTTCCAGGAAGTCCTGCAATTTATA < 41bp 1 0.614317051145823 1 0.845586538314819 experiment 0.771365897708354 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347902 chr2:109347900 synonymous SNV . 0 19 hm5C_associated_SNPs_43918 0 0 1 0 1 RANBP2 chr2:109347930 5'GT 109347930 Upstream 31bp
chr2 109347900 109347900 1 + C T UCEC 109347910 + 109347890 109347930 41 CCAAACTTTTCCCAGGAAGTCCTGCAATTTATAAACTAAAG CCAAACTTTTTCCAGGAAGTCCTGCAATTTATAAACTAAAG < 41bp 1 0.04338749911607 1 0.194399684667587 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347910 chr2:109347900 synonymous SNV . 0 11 hm5C_associated_SNPs_43919 0 0 1 0 1 RANBP2 chr2:109347930 5'GT 109347930 Upstream 31bp
chr2 109347900 109347900 1 + C T UCEC 109347911 + 109347891 109347931 41 CAAACTTTTCCCAGGAAGTCCTGCAATTTATAAACTAAAGG CAAACTTTTTCCAGGAAGTCCTGCAATTTATAAACTAAAGG < 41bp 1 0.291331717885334 1 0.287665963172913 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347911 chr2:109347900 synonymous SNV . 0 10 hm5C_associated_SNPs_43920 0 0 1 0 1 RANBP2 chr2:109347930 5'GT 109347930 Upstream 31bp
chr6 158497759 158497759 1 + C T UCEC 158497757 + 158497737 158497777 41 CAAGCGACAAATGCCGCACCCCCGCCTGGACAGACAGGGTG CAAGCGACAAATGCCGCACCCCTGCCTGGACAGACAGGGTG < 41bp 1 0.0619838000040266 1 0.0717436075210571 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158497757 chr6:158497759 synonymous SNV . 0 23 hm5C_associated_SNPs_43921 0 0 1 0 1 SYNJ2 chr6:158497814 5'GT 158497814 Upstream 56bp
chr6 158497759 158497759 1 + C T UCEC 158497758 + 158497738 158497778 41 AAGCGACAAATGCCGCACCCCCGCCTGGACAGACAGGGTGC AAGCGACAAATGCCGCACCCCTGCCTGGACAGACAGGGTGC < 41bp 1 0.318501407280182 1 0.426237314939499 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158497758 chr6:158497759 synonymous SNV . 0 22 hm5C_associated_SNPs_43922 0 0 1 0 1 SYNJ2 chr6:158497814 5'GT 158497814 Upstream 56bp
chr12 22214296 22214296 1 + C T UCEC 22214315 + 22214295 22214335 41 ACATTTATGTATCAGGAGACCAAAAAGAAATAATATCTTAT ATATTTATGTATCAGGAGACCAAAAAGAAATAATATCTTAT < 41bp 1 0.368649267803194 1 0.63706636428833 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22214315 chr12:22214296 synonymous SNV . 0 2 hm5C_associated_SNPs_43923 0 0 1 0 2 CMAS chr12:22214215 3'AG 22214215 Downstream 82bp
chr12 22214296 22214296 1 + C T UCEC 22214315 + 22214295 22214335 41 ACATTTATGTATCAGGAGACCAAAAAGAAATAATATCTTAT ATATTTATGTATCAGGAGACCAAAAAGAAATAATATCTTAT < 41bp 1 0.368649267803194 1 0.63706636428833 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22214315 chr12:22214296 synonymous SNV . 0 2 hm5C_associated_SNPs_43923 0 0 1 0 2 CMAS chr12:22214386 5'GT 22214386 Upstream 91bp
chr9 133738156 133738156 1 + G A UCEC 133738171 + 133738151 133738191 41 TCTACGTCTCCTCCGAGAGCCGCTTCAACACCCTGGCCGAG TCTACATCTCCTCCGAGAGCCGCTTCAACACCCTGGCCGAG < 41bp 1 0.109479461351639 1 0.170564502477646 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133738171 chr9:133738156 nonsynonymous SNV 0.986 2 6 hm5C_associated_SNPs_43924 0 0 1 0 1 ABL1 chr9:133738150 3'AG 133738150 Downstream 7bp
chr5 131973808 131973808 1 + G A UCEC 131973793 + 131973773 131973813 41 ATATTGAATACATAGAAATACGGTCTGATGCCGATGAAAAT ATATTGAATACATAGAAATACGGTCTGATGCCGATAAAAAT < 41bp 1 0.0830372632840123 1 0.153104960918427 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131973793 chr5:131973808 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_43925 0 0 1 0 1 RAD50 chr5:131973773 3'AG 131973773 Downstream 36bp
chr7 77214887 77214887 1 + G C UCEC 77214877 + 77214857 77214897 41 TAGATCATTGTAATGGCCTGCCGAGAATTTGAGATGGGAAG TAGATCATTGTAATGGCCTGCCGAGAATTTCAGATGGGAAG < 41bp 1 0.135545061589758 1 0.562607824802399 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77214877 chr7:77214887 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_43926 0 0 1 1 1 PTPN12 chr7:77214860 3'AG 77214860 Downstream 28bp
chr12 6878783 6878783 1 + G A UCEC 6878771 + 6878751 6878791 41 CCTCTTTCTCCTTTGCAGGACCTGAAGGAGAAGAAGGAGAA CCTCTTTCTCCTTTGCAGGACCTGAAGGAGAAAAAGGAGAA < 41bp 1 0.134695103186978 1 0.0995012819766998 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMS ENSG00000159335 CDS Human protein_coding chr12:6878771 chr12:6878783 synonymous SNV . 0 33 hm5C_associated_SNPs_43927 0 0 1 0 2 PTMS chr12:6878769 3'AG 6878769 Downstream 15bp
chr12 6878783 6878783 1 + G A UCEC 6878771 + 6878751 6878791 41 CCTCTTTCTCCTTTGCAGGACCTGAAGGAGAAGAAGGAGAA CCTCTTTCTCCTTTGCAGGACCTGAAGGAGAAAAAGGAGAA < 41bp 1 0.134695103186978 1 0.0995012819766998 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMS ENSG00000159335 CDS Human protein_coding chr12:6878771 chr12:6878783 synonymous SNV . 0 33 hm5C_associated_SNPs_43927 0 0 1 0 2 PTMS chr12:6878840 5'GT 6878840 Upstream 58bp
chr12 6878783 6878783 1 + G A UCEC 6878772 + 6878752 6878792 41 CTCTTTCTCCTTTGCAGGACCTGAAGGAGAAGAAGGAGAAG CTCTTTCTCCTTTGCAGGACCTGAAGGAGAAAAAGGAGAAG < 41bp 1 0.520757545229516 1 0.371726632118225 experiment 0.958484909540967 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMS ENSG00000159335 CDS Human protein_coding chr12:6878772 chr12:6878783 synonymous SNV . 0 32 hm5C_associated_SNPs_43928 0 0 1 0 2 PTMS chr12:6878769 3'AG 6878769 Downstream 15bp
chr12 6878783 6878783 1 + G A UCEC 6878772 + 6878752 6878792 41 CTCTTTCTCCTTTGCAGGACCTGAAGGAGAAGAAGGAGAAG CTCTTTCTCCTTTGCAGGACCTGAAGGAGAAAAAGGAGAAG < 41bp 1 0.520757545229516 1 0.371726632118225 experiment 0.958484909540967 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMS ENSG00000159335 CDS Human protein_coding chr12:6878772 chr12:6878783 synonymous SNV . 0 32 hm5C_associated_SNPs_43928 0 0 1 0 2 PTMS chr12:6878840 5'GT 6878840 Upstream 58bp
chr2 36668430 36668430 1 + T C UCEC 36668446 + 36668426 36668466 41 CCGCTGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATT CCGCCGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATT < 41bp 1 0.671599463965713 1 0.686736583709717 experiment 0.656801072068573 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36668446 chr2:36668430 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_43929 0 0 1 0 1 CRIM1 chr2:36668401 3'AG 36668401 Downstream 30bp
chr2 36668430 36668430 1 + T C UCEC 36668448 + 36668428 36668468 41 GCTGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATTCT GCCGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATTCT < 41bp 1 0.502154955495695 1 0.427867740392685 experiment 0.995690089008609 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36668448 chr2:36668430 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_43930 0 0 1 0 1 CRIM1 chr2:36668401 3'AG 36668401 Downstream 30bp
chr13 97928589 97928589 1 + T A UCEC 97928608 + 97928588 97928628 41 ATGCAAATTTGCTCATCCCCCCAAAAGTTGTCAGGTTGAAA AAGCAAATTTGCTCATCCCCCCAAAAGTTGTCAGGTTGAAA < 41bp 1 0.202007015234006 1 0.353849023580551 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MBNL2 ENSG00000139793 CDS Human protein_coding chr13:97928608 chr13:97928589 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_43931 0 0 1 0 1 MBNL2 chr13:97928663 5'GT 97928663 Upstream 75bp
chr1 32782309 32782309 1 + G A UCEC 32782298 + 32782278 32782318 41 GCCAATGCTGAGGAGATGACCAAGTACCACAGCGATGACTA GCCAATGCTGAGGAGATGACCAAGTACCACAACGATGACTA < 41bp 1 0.603469107853876 1 0.402974903583527 experiment 0.793061784292247 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32782298 chr1:32782309 nonsynonymous SNV 0.961 2 32 hm5C_associated_SNPs_43932 0 0 1 0 2 HDAC1 chr1:32782266 3'AG 32782266 Downstream 44bp
chr1 32782309 32782309 1 + G A UCEC 32782298 + 32782278 32782318 41 GCCAATGCTGAGGAGATGACCAAGTACCACAGCGATGACTA GCCAATGCTGAGGAGATGACCAAGTACCACAACGATGACTA < 41bp 1 0.603469107853876 1 0.402974903583527 experiment 0.793061784292247 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32782298 chr1:32782309 nonsynonymous SNV 0.961 2 32 hm5C_associated_SNPs_43932 0 0 1 0 2 HDAC1 chr1:32782383 5'GT 32782383 Upstream 75bp
chr11 61545217 61545217 1 + C T UCEC 61545235 + 61545215 61545255 41 ACCGAGCAATTGAAGAGGATCTCGCGCATGCGGCTGGTGCA ACTGAGCAATTGAAGAGGATCTCGCGCATGCGGCTGGTGCA < 41bp 1 0.399093195255086 1 0.415896505117416 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYRF ENSG00000124920 CDS Human protein_coding chr11:61545235 chr11:61545217 synonymous SNV . 0 3 hm5C_associated_SNPs_43933 0 0 1 0 1 MYRF chr11:61545206 3'AG 61545206 Downstream 12bp
chr1 153750691 153750691 1 + C T UCEC 153750678 + 153750658 153750698 41 AAGGTCCGGCTGGCAGTGGGCAGCGGGCTGCGCCCAGATAC AAGGTCCGGCTGGCAGTGGGCAGCGGGCTGCGCTCAGATAC < 41bp 1 0.753133599595254 1 0.875201046466827 experiment 0.493732800809491 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750678 chr1:153750691 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_43934 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 55bp
chr1 153750691 153750691 1 + C T UCEC 153750688 + 153750668 153750708 41 TGGCAGTGGGCAGCGGGCTGCGCCCAGATACCTGGGAGCGT TGGCAGTGGGCAGCGGGCTGCGCTCAGATACCTGGGAGCGT < 41bp 1 0.232739395707226 1 0.174329578876495 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750688 chr1:153750691 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_43935 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 55bp
chr4 106861778 106861778 1 + G T UCEC 106861769 + 106861749 106861789 41 GCAAATGTAAAGAAGGATACCAGGGTGATGGACTGACTTGT GCAAATGTAAAGAAGGATACCAGGGTGATTGACTGACTTGT < 41bp 1 0.762298141851062 1 0.680374801158905 experiment 0.475403716297876 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPNT ENSG00000168743 CDS Human protein_coding chr4:106861769 chr4:106861778 stopgain 0.804 1 30 hm5C_associated_SNPs_43936 0 0 1 0 1 NPNT chr4:106861793 5'GT 106861793 Upstream 16bp
chr17 38450694 38450694 1 + T C UCEC 38450687 + 38450667 38450707 41 CTAGAGAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCT CTAGAGAAAAATGTAAGCCACAGCTGTCGAACTTCCCACCT < 41bp 1 0.560661174843277 1 0.372536599636078 experiment 0.878677650313446 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDC6 ENSG00000094804 CDS Human protein_coding chr17:38450687 chr17:38450694 nonsynonymous SNV 0.990 3 28 hm5C_associated_SNPs_43937 0 0 1 0 2 CDC6 chr17:38450616 3'AG 38450616 Downstream 79bp
chr17 38450694 38450694 1 + T C UCEC 38450687 + 38450667 38450707 41 CTAGAGAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCT CTAGAGAAAAATGTAAGCCACAGCTGTCGAACTTCCCACCT < 41bp 1 0.560661174843277 1 0.372536599636078 experiment 0.878677650313446 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDC6 ENSG00000094804 CDS Human protein_coding chr17:38450687 chr17:38450694 nonsynonymous SNV 0.990 3 28 hm5C_associated_SNPs_43937 0 0 1 0 2 CDC6 chr17:38450755 5'GT 38450755 Upstream 62bp
chr15 77756709 77756709 1 + G A UCEC 77756689 + 77756669 77756709 41 GTTGCTTCAGAGTGAGTCTTCAAATGCAGCAGAAGGCAATG GTTGCTTCAGAGTGAGTCTTCAAATGCAGCAGAAGGCAATA < 41bp 1 0.48873683922215 1 0.272305756807327 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HMG20A ENSG00000140382 CDS Human protein_coding chr15:77756689 chr15:77756709 nonsynonymous SNV 0.844 3 41 hm5C_associated_SNPs_43938 0 0 1 0 1 HMG20A chr15:77756729 5'GT 77756729 Upstream 21bp
chr2 158152285 158152285 1 + G A UCEC 158152276 + 158152256 158152296 41 GTAGAAAGAAAGTGGCCTGTCCAGTAATCGAAGTCATCAAT GTAGAAAGAAAGTGGCCTGTCCAGTAATCAAAGTCATCAAT < 41bp 1 0.2478840713104 1 0.194105625152588 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GALNT5 ENSG00000136542 CDS Human protein_coding chr2:158152276 chr2:158152285 nonsynonymous SNV 0.997 4 30 hm5C_associated_SNPs_43946 0 0 0 0 1 GALNT5 chr2:158152310 5'GT 158152310 Upstream 26bp
chr21 34634952 34634952 1 + A G UCEC 34634957 + 34634937 34634977 41 AACTCCTGAGCTCAAACAGTCGTCCTGCCTAAGCTTCCCCA AACTCCTGAGCTCAAGCAGTCGTCCTGCCTAAGCTTCCCCA < 41bp 1 0.0864923444170237 1 0.339205265045166 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IFNAR2 ENSG00000159110 CDS Human protein_coding chr21:34634957 chr21:34634952 synonymous SNV . 0 16 hm5C_associated_SNPs_43947 0 0 1 0 1 IFNAR2 chr21:34634866 3'AG 34634866 Downstream 87bp
chr21 34634952 34634952 1 + A G UCEC 34634961 + 34634941 34634981 41 CCTGAGCTCAAACAGTCGTCCTGCCTAAGCTTCCCCAGTAG CCTGAGCTCAAGCAGTCGTCCTGCCTAAGCTTCCCCAGTAG < 41bp 1 0.302521572853914 1 0.222620189189911 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IFNAR2 ENSG00000159110 CDS Human protein_coding chr21:34634961 chr21:34634952 synonymous SNV . 0 12 hm5C_associated_SNPs_43948 0 0 1 0 1 IFNAR2 chr21:34634866 3'AG 34634866 Downstream 87bp
chrX 49103967 49103967 1 + C T UCEC 49103974 + 49103954 49103994 41 TAGGAGCCCCAGGCCCAGGCCACTCAGGTGTCAGATGTGCC TAGGAGCCCCAGGTCCAGGCCACTCAGGTGTCAGATGTGCC < 41bp 1 0.0753730372432256 1 0.0346382856369019 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49103974 chrX:49103967 nonsynonymous SNV 0.961 0 14 hm5C_associated_SNPs_43949 0 0 0 0 2 CCDC22 chrX:49103957 3'AG 49103957 Downstream 11bp
chrX 49103967 49103967 1 + C T UCEC 49103974 + 49103954 49103994 41 TAGGAGCCCCAGGCCCAGGCCACTCAGGTGTCAGATGTGCC TAGGAGCCCCAGGTCCAGGCCACTCAGGTGTCAGATGTGCC < 41bp 1 0.0753730372432256 1 0.0346382856369019 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49103974 chrX:49103967 nonsynonymous SNV 0.961 0 14 hm5C_associated_SNPs_43949 0 0 0 0 2 CCDC22 chrX:49104019 5'GT 49104019 Upstream 53bp
chr10 75871856 75871856 1 + A G UCEC 75871841 + 75871821 75871861 41 TGGCCGCGGCTCAGTCCTTGCATCGGGAAGCTACCAAGTGG TGGCCGCGGCTCAGTCCTTGCATCGGGAAGCTACCGAGTGG < 41bp 1 0.393644539515876 1 0.196299463510513 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75871841 chr10:75871856 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_43951 0 0 0 0 1 VCL chr10:75871870 5'GT 75871870 Upstream 15bp
chr1 37947347 37947347 1 + C T UCEC 37947350 + 37947330 37947370 41 GGGATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGG GGGATCGTGGTTTCCAATGACACATACCGTGACCTCCAAGG < 41bp 1 0.352443447288581 1 0.163795709609985 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947350 chr1:37947347 synonymous SNV . 0 18 hm5C_associated_SNPs_43952 0 0 0 0 1 ZC3H12A chr1:37947436 5'GT 37947436 Upstream 90bp
chr1 37947347 37947347 1 + C T UCEC 37947352 + 37947332 37947372 41 GATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGGCG GATCGTGGTTTCCAATGACACATACCGTGACCTCCAAGGCG < 41bp 1 0.150716868283163 1 0.0808469653129578 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947352 chr1:37947347 synonymous SNV . 0 16 hm5C_associated_SNPs_43953 0 0 0 0 1 ZC3H12A chr1:37947436 5'GT 37947436 Upstream 90bp
chr3 9408636 9408636 1 + G T UCEC 9408634 + 9408614 9408654 41 ATAACTTATTTGTGGTGGTTCAGGAGTTTCAAGATTACCAG ATAACTTATTTGTGGTGGTTCATGAGTTTCAAGATTACCAG < 41bp 1 0.666216666919164 1 0.164112478494644 experiment 0.667566666161671 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control THUMPD3 ENSG00000134077 CDS Human protein_coding chr3:9408634 chr3:9408636 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_43955 0 0 1 0 2 THUMPD3 chr3:9408592 3'AG 9408592 Downstream 45bp
chr3 9408636 9408636 1 + G T UCEC 9408634 + 9408614 9408654 41 ATAACTTATTTGTGGTGGTTCAGGAGTTTCAAGATTACCAG ATAACTTATTTGTGGTGGTTCATGAGTTTCAAGATTACCAG < 41bp 1 0.666216666919164 1 0.164112478494644 experiment 0.667566666161671 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control THUMPD3 ENSG00000134077 CDS Human protein_coding chr3:9408634 chr3:9408636 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_43955 0 0 1 0 2 THUMPD3 chr3:9408669 5'GT 9408669 Upstream 34bp
chr5 65455065 65455065 1 + C A UCEC 65455056 + 65455036 65455076 41 TGCCTCTGCAGGTAAAATCCCAGAGGAATCCAAAGCCCTCT TGCCTCTGCAGGTAAAATCCCAGAGGAATACAAAGCCCTCT < 41bp 1 0.679950099673905 1 0.809311866760254 experiment 0.64009980065219 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control SREK1 ENSG00000153914 CDS Human protein_coding chr5:65455056 chr5:65455065 nonsynonymous SNV 0.999 0 30 hm5C_associated_SNPs_43956 0 0 1 0 2 SREK1 chr5:65455047 3'AG 65455047 Downstream 19bp
chr5 65455065 65455065 1 + C A UCEC 65455056 + 65455036 65455076 41 TGCCTCTGCAGGTAAAATCCCAGAGGAATCCAAAGCCCTCT TGCCTCTGCAGGTAAAATCCCAGAGGAATACAAAGCCCTCT < 41bp 1 0.679950099673905 1 0.809311866760254 experiment 0.64009980065219 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control SREK1 ENSG00000153914 CDS Human protein_coding chr5:65455056 chr5:65455065 nonsynonymous SNV 0.999 0 30 hm5C_associated_SNPs_43956 0 0 1 0 2 SREK1 chr5:65455162 5'GT 65455162 Upstream 98bp
chr3 157841661 157841661 1 + G T UCEC 157841658 + 157841638 157841678 41 ATTATATTTTATTTCAGACGCAGGCATCGATCAAGCAGTAG ATTATATTTTATTTCAGACGCAGTCATCGATCAAGCAGTAG < 41bp 1 0.107094297105426 1 0.0326999127864838 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157841658 chr3:157841661 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_43957 0 0 1 0 1 RSRC1 chr3:157841655 3'AG 157841655 Downstream 7bp
chr3 157841661 157841661 1 + G T UCEC 157841665 + 157841645 157841685 41 TTTATTTCAGACGCAGGCATCGATCAAGCAGTAGCTCTTCT TTTATTTCAGACGCAGTCATCGATCAAGCAGTAGCTCTTCT < 41bp 1 0.13816896479047 1 0.343939125537872 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157841665 chr3:157841661 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_43958 0 0 1 0 1 RSRC1 chr3:157841655 3'AG 157841655 Downstream 7bp
chr1 95639445 95639445 1 + G A UCEC 95639425 + 95639405 95639445 41 CGCCTGCTTGCAGAGCTTTCCAGCCCGTTTGTGAATCAGCG CGCCTGCTTGCAGAGCTTTCCAGCCCGTTTGTGAATCAGCA < 41bp 1 0.270501626515241 1 0.472855150699615 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM56;TMEM56-RWDD3 ENSG00000152078;ENSG00000271092 CDS Human other chr1:95639425 chr1:95639445 nonsynonymous SNV 0.987 5 41 hm5C_associated_SNPs_43959 0 0 1 0 2 TMEM56;TMEM56-RWDD3 chr1:95639372 3'AG 95639372 Downstream 74bp
chr1 95639445 95639445 1 + G A UCEC 95639425 + 95639405 95639445 41 CGCCTGCTTGCAGAGCTTTCCAGCCCGTTTGTGAATCAGCG CGCCTGCTTGCAGAGCTTTCCAGCCCGTTTGTGAATCAGCA < 41bp 1 0.270501626515241 1 0.472855150699615 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM56;TMEM56-RWDD3 ENSG00000152078;ENSG00000271092 CDS Human other chr1:95639425 chr1:95639445 nonsynonymous SNV 0.987 5 41 hm5C_associated_SNPs_43959 0 0 1 0 2 TMEM56;TMEM56-RWDD3 chr1:95639445 5'GT 95639445 Upstream 1bp
chr22 22025335 22025335 1 + G A UCEC 22025316 + 22025296 22025336 41 CAGCCCTTTGTCTACCCAGTCTGCACTCCCGATGGCATCGT CAGCCCTTTGTCTACCCAGTCTGCACTCCCGATGGCATCAT < 41bp 1 0.562476715045957 1 0.349373579025269 experiment 0.875046569908087 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22025316 chr22:22025335 nonsynonymous SNV 0.853 1 40 hm5C_associated_SNPs_43960 0 0 1 0 2 PPIL2 chr22:22025286 3'AG 22025286 Downstream 50bp
chr22 22025335 22025335 1 + G A UCEC 22025316 + 22025296 22025336 41 CAGCCCTTTGTCTACCCAGTCTGCACTCCCGATGGCATCGT CAGCCCTTTGTCTACCCAGTCTGCACTCCCGATGGCATCAT < 41bp 1 0.562476715045957 1 0.349373579025269 experiment 0.875046569908087 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22025316 chr22:22025335 nonsynonymous SNV 0.853 1 40 hm5C_associated_SNPs_43960 0 0 1 0 2 PPIL2 chr22:22025348 5'GT 22025348 Upstream 14bp
chr16 22019662 22019662 1 + G A UCEC 22019663 + 22019643 22019683 41 CTCAGGATGTCTCTTTCTGGCCGCCGATATCTTCGCCATCG CTCAGGATGTCTCTTTCTGACCGCCGATATCTTCGCCATCG < 41bp 1 0.513417443271838 1 0.04585200548172 experiment 0.973165113456323 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C16orf52 ENSG00000185716 CDS Human protein_coding chr16:22019663 chr16:22019662 nonsynonymous SNV 0.998 0 20 hm5C_associated_SNPs_43961 0 0 1 1 1 C16orf52 chr16:22019728 5'GT 22019728 Upstream 67bp
chr5 33459945 33459945 1 + C T UCEC 33459929 + 33459909 33459949 41 CCTTTGAGGTGGAGAAGGAGCTGTTTGCCCTGAAACCCATG CCTTTGAGGTGGAGAAGGAGCTGTTTGCCCTGAAACTCATG < 41bp 1 0.444675870260336 1 0.089888870716095 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33459929 chr5:33459945 nonsynonymous SNV 0.985 4 37 hm5C_associated_SNPs_43962 0 0 1 0 1 TARS chr5:33459966 5'GT 33459966 Upstream 22bp
chr9 20993279 20993279 1 + G A UCEC 20993260 + 20993240 20993280 41 TTTTTACCCTAGTTCATTGACTGGCTATTCAGCATCATGGA TTTTTACCCTAGTTCATTGACTGGCTATTCAGCATCATGAA < 41bp 1 0.304589612920757 1 0.0510105788707733 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20993260 chr9:20993279 nonsynonymous SNV 0.626 4 40 hm5C_associated_SNPs_43963 0 0 0 0 2 FOCAD chr9:20993252 3'AG 20993252 Downstream 28bp
chr9 20993279 20993279 1 + G A UCEC 20993260 + 20993240 20993280 41 TTTTTACCCTAGTTCATTGACTGGCTATTCAGCATCATGGA TTTTTACCCTAGTTCATTGACTGGCTATTCAGCATCATGAA < 41bp 1 0.304589612920757 1 0.0510105788707733 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20993260 chr9:20993279 nonsynonymous SNV 0.626 4 40 hm5C_associated_SNPs_43963 0 0 0 0 2 FOCAD chr9:20993327 5'GT 20993327 Upstream 49bp
chr2 228162514 228162514 1 + C T UCEC 228162527 + 228162507 228162547 41 GTCTGCCCGGTGCAATTATCCCTGGCCAGACAGGAAATCGT GTCTGCCTGGTGCAATTATCCCTGGCCAGACAGGAAATCGT < 41bp 1 0.178753867748665 1 0.220451056957245 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228162527 chr2:228162514 synonymous SNV . 0 8 hm5C_associated_SNPs_43964 0 0 0 0 1 COL4A3 chr2:228162575 5'GT 228162575 Upstream 62bp
chr1 78001607 78001607 1 + C T UCEC 78001588 + 78001568 78001608 41 TCGGCAGACACCATGACCAACCGCCTTCTCCAAAGGAGCCG TCGGCAGACACCATGACCAACCGCCTTCTCCAAAGGAGCTG < 41bp 1 0.173160089686509 1 0.0426214933395386 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001588 chr1:78001607 nonsynonymous SNV 0.520 2 40 hm5C_associated_SNPs_43965 0 0 0 0 1 AK5 chr1:78001532 3'AG 78001532 Downstream 76bp
chr1 78001607 78001607 1 + C T UCEC 78001612 + 78001592 78001632 41 CTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGTGGACGACAC CTTCTCCAAAGGAGCTGGAGCAGCCTGCCTGTGGACGACAC < 41bp 1 0.433158637024415 1 0.374099254608154 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001612 chr1:78001607 nonsynonymous SNV 0.520 2 16 hm5C_associated_SNPs_43966 0 0 0 0 1 AK5 chr1:78001532 3'AG 78001532 Downstream 76bp
chr21 47970642 47970642 1 + C T UCEC 47970626 + 47970606 47970646 41 TGCCCTCACACCTGTGTTACCAACCTCCCCAAACCTCGTCA TGCCCTCACACCTGTGTTACCAACCTCCCCAAACCTTGTCA < 41bp 1 0.211134664593406 1 0.191577464342117 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47970626 chr21:47970642 nonsynonymous SNV 0.998 4 37 hm5C_associated_SNPs_43968 0 0 1 0 1 DIP2A chr21:47970657 5'GT 47970657 Upstream 16bp
chr22 19707367 19707367 1 + C A UCEC 19707377 + 19707357 19707397 41 GGTCCACAGCCTCTTCCTGACAGACTTGTACAAGGACCGGA GGTCCACAGCATCTTCCTGACAGACTTGTACAAGGACCGGA < 41bp 1 0.257819061709238 1 0.089176207780838 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEPT5 ENSG00000184702 CDS Human protein_coding chr22:19707377 chr22:19707367 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_43969 0 0 0 1 1 SEPT5 chr22:19707329 3'AG 19707329 Downstream 39bp
chr18 34289311 34289311 1 + G T UCEC 34289293 + 34289273 34289313 41 TCTGCCTCCAGCGTCTCGTCCTCCAGCAGCACGTTGGAGAG TCTGCCTCCAGCGTCTCGTCCTCCAGCAGCACGTTGGATAG < 41bp 1 0.765161560853999 1 0.975529551506042 experiment 0.469676878292002 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34289293 chr18:34289311 nonsynonymous SNV 0.998 4 39 hm5C_associated_SNPs_43970 0 0 0 0 1 FHOD3 chr18:34289354 5'GT 34289354 Upstream 44bp
chr13 52293441 52293441 1 + C T UCEC 52293456 + 52293436 52293476 41 GGCAGCGCCTGGGAGGTTATCGGACCAGTGCTGTGGCCTCA GGCAGTGCCTGGGAGGTTATCGGACCAGTGCTGTGGCCTCA < 41bp 1 0.556659225355364 1 0.952416718006134 experiment 0.886681549289272 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDFY2 ENSG00000139668 CDS Human protein_coding chr13:52293456 chr13:52293441 nonsynonymous SNV 0.999 3 6 hm5C_associated_SNPs_43971 0 0 1 0 1 WDFY2 chr13:52293484 5'GT 52293484 Upstream 44bp
chr20 61291813 61291813 1 + G A UCEC 61291833 + 61291813 61291853 41 GGCTTCCTGGGCTCTGGGGCCGCTGCTTTCTTCACCGCCGT AGCTTCCTGGGCTCTGGGGCCGCTGCTTTCTTCACCGCCGT < 41bp 1 0.415884045268932 1 0.287621378898621 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61291833 chr20:61291813 nonsynonymous SNV 0.967 4 1 hm5C_associated_SNPs_43972 0 0 0 0 2 SLCO4A1 chr20:61291764 3'AG 61291764 Downstream 50bp
chr20 61291813 61291813 1 + G A UCEC 61291833 + 61291813 61291853 41 GGCTTCCTGGGCTCTGGGGCCGCTGCTTTCTTCACCGCCGT AGCTTCCTGGGCTCTGGGGCCGCTGCTTTCTTCACCGCCGT < 41bp 1 0.415884045268932 1 0.287621378898621 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61291833 chr20:61291813 nonsynonymous SNV 0.967 4 1 hm5C_associated_SNPs_43972 0 0 0 0 2 SLCO4A1 chr20:61291885 5'GT 61291885 Upstream 73bp
chr1 97771760 97771760 1 - C T UCEC 97771744 - 97771724 97771764 41 TATTGTGAGCATCGCAAGAGCTGCAAAGGAAGGTAAGAACT TATTATGAGCATCGCAAGAGCTGCAAAGGAAGGTAAGAACT < 41bp 1 0.587177665092024 1 0.492677181959152 experiment 0.825644669815951 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPYD ENSG00000188641 CDS Human protein_coding chr1:97771744 chr1:97771760 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_43973 0 0 0 0 2 DPYD chr1:97771733 5'GT 97771733 Upstream 28bp
chr1 97771760 97771760 1 - C T UCEC 97771744 - 97771724 97771764 41 TATTGTGAGCATCGCAAGAGCTGCAAAGGAAGGTAAGAACT TATTATGAGCATCGCAAGAGCTGCAAAGGAAGGTAAGAACT < 41bp 1 0.587177665092024 1 0.492677181959152 experiment 0.825644669815951 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPYD ENSG00000188641 CDS Human protein_coding chr1:97771744 chr1:97771760 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_43973 0 0 0 0 2 DPYD chr1:97771853 3'AG 97771853 Downstream 94bp
chr21 48068522 48068522 1 + G A UCEC 48068504 + 48068484 48068524 41 ACTGGGATCATCAGTCTCTTCTGTGCACACTATGCGCGGCC ACTGGGATCATCAGTCTCTTCTGTGCACACTATGCGCGACC < 41bp 1 0.697162347922551 1 0.731600165367126 experiment 0.605675304154898 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48068504 chr21:48068522 synonymous SNV 0.008 0 39 hm5C_associated_SNPs_43975 0 0 1 0 1 PRMT2 chr21:48068531 5'GT 48068531 Upstream 10bp
chr7 127342516 127342516 1 + G A UCEC 127342535 + 127342515 127342555 41 AGTGTGGTCAGGGCCCTGCTCCTCCCAGATTACTACCTGGT AATGTGGTCAGGGCCCTGCTCCTCCCAGATTACTACCTGGT < 41bp 1 0.0375202993178555 1 0.0946151614189148 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SND1 ENSG00000197157 CDS Human protein_coding chr7:127342535 chr7:127342516 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_43977 0 0 1 0 2 SND1 chr7:127342489 3'AG 127342489 Downstream 28bp
chr7 127342516 127342516 1 + G A UCEC 127342535 + 127342515 127342555 41 AGTGTGGTCAGGGCCCTGCTCCTCCCAGATTACTACCTGGT AATGTGGTCAGGGCCCTGCTCCTCCCAGATTACTACCTGGT < 41bp 1 0.0375202993178555 1 0.0946151614189148 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SND1 ENSG00000197157 CDS Human protein_coding chr7:127342535 chr7:127342516 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_43977 0 0 1 0 2 SND1 chr7:127342580 5'GT 127342580 Upstream 65bp
chr19 803576 803576 1 + C T UCEC 803568 + 803548 803588 41 CCTTCTCTTGCAGCGGGGATCTGACGAGCTTTTCTCTACTT CCTTCTCTTGCAGCGGGGATCTGACGAGTTTTTCTCTACTT < 41bp 1 0.399002705465348 1 0.252969771623611 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:803568 chr19:803576 nonsynonymous SNV 0.900 3 29 hm5C_associated_SNPs_43978 0 0 1 0 2 PTBP1 chr19:803561 3'AG 803561 Downstream 16bp
chr19 803576 803576 1 + C T UCEC 803568 + 803548 803588 41 CCTTCTCTTGCAGCGGGGATCTGACGAGCTTTTCTCTACTT CCTTCTCTTGCAGCGGGGATCTGACGAGTTTTTCTCTACTT < 41bp 1 0.399002705465348 1 0.252969771623611 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:803568 chr19:803576 nonsynonymous SNV 0.900 3 29 hm5C_associated_SNPs_43978 0 0 1 0 2 PTBP1 chr19:803636 5'GT 803636 Upstream 61bp
chr2 71780272 71780272 1 + C T UCEC 71780268 + 71780248 71780288 41 CGGGAACAAGTTCGACATGACCTGCCTGCCGCTGGCCTCCA CGGGAACAAGTTCGACATGACCTGTCTGCCGCTGGCCTCCA < 41bp 1 0.194734157204492 1 0.00962042808532715 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71780268 chr2:71780272 synonymous SNV . 0 25 hm5C_associated_SNPs_43979 0 0 0 0 1 DYSF chr2:71780318 5'GT 71780318 Upstream 47bp
chr8 48641588 48641588 1 + G A UCEC 48641587 + 48641567 48641607 41 CCTGGACTGCCGCTCAAGACCGCAGTGCAGAGTGAAGGTCA CCTGGACTGCCGCTCAAGACCACAGTGCAGAGTGAAGGTCA < 41bp 1 0.64233905541336 1 0.169075399637222 experiment 0.715321889173279 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPIDR ENSG00000164808 CDS Human protein_coding chr8:48641587 chr8:48641588 synonymous SNV . 0 22 hm5C_associated_SNPs_43980 0 0 1 0 3 SPIDR chr8:48641495 3'AG 48641495 Downstream 94bp
chr8 48641588 48641588 1 + G A UCEC 48641587 + 48641567 48641607 41 CCTGGACTGCCGCTCAAGACCGCAGTGCAGAGTGAAGGTCA CCTGGACTGCCGCTCAAGACCACAGTGCAGAGTGAAGGTCA < 41bp 1 0.64233905541336 1 0.169075399637222 experiment 0.715321889173279 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPIDR ENSG00000164808 CDS Human protein_coding chr8:48641587 chr8:48641588 synonymous SNV . 0 22 hm5C_associated_SNPs_43980 0 0 1 0 3 SPIDR chr8:48641609 5'GT 48641609 Upstream 22bp
chr8 48641588 48641588 1 + G A UCEC 48641587 + 48641567 48641607 41 CCTGGACTGCCGCTCAAGACCGCAGTGCAGAGTGAAGGTCA CCTGGACTGCCGCTCAAGACCACAGTGCAGAGTGAAGGTCA < 41bp 1 0.64233905541336 1 0.169075399637222 experiment 0.715321889173279 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPIDR ENSG00000164808 CDS Human protein_coding chr8:48641587 chr8:48641588 synonymous SNV . 0 22 hm5C_associated_SNPs_43980 0 0 1 0 3 SPIDR chr8:48641664 5'GT 48641664 Upstream 77bp
chr17 73727996 73727996 1 + T A UCEC 73727993 + 73727973 73728013 41 CAACATCCATCTGAAACCTTCCTTCTCCGACGGCCTCAAGA CAACATCCATCTGAAACCTTCCTACTCCGACGGCCTCAAGA < 41bp 1 0.0111555038327656 1 0.0177028179168701 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73727993 chr17:73727996 nonsynonymous SNV 0.987 5 24 hm5C_associated_SNPs_43981 0 0 0 0 1 ITGB4 chr17:73728054 5'GT 73728054 Upstream 59bp
chr9 106858491 106858491 1 + C T UCEC 106858485 + 106858465 106858505 41 AATGGGCAGGCTGGTATTACCAAAGCCTCTGTGTCAATCAC AATGGGCAGGCTGGTATTACCAAAGCTTCTGTGTCAATCAC < 41bp 1 0.628075679355909 1 0.55999094247818 experiment 0.743848641288182 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMC2 ENSG00000136824 CDS Human protein_coding chr9:106858485 chr9:106858491 synonymous SNV . 0 27 hm5C_associated_SNPs_43982 0 0 1 0 2 SMC2 chr9:106858429 3'AG 106858429 Downstream 63bp
chr9 106858491 106858491 1 + C T UCEC 106858485 + 106858465 106858505 41 AATGGGCAGGCTGGTATTACCAAAGCCTCTGTGTCAATCAC AATGGGCAGGCTGGTATTACCAAAGCTTCTGTGTCAATCAC < 41bp 1 0.628075679355909 1 0.55999094247818 experiment 0.743848641288182 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMC2 ENSG00000136824 CDS Human protein_coding chr9:106858485 chr9:106858491 synonymous SNV . 0 27 hm5C_associated_SNPs_43982 0 0 1 0 2 SMC2 chr9:106858578 5'GT 106858578 Upstream 88bp
chr3 47374679 47374679 1 + C T UCEC 47374698 + 47374678 47374718 41 ACGACCGGGAGCAGAGGGGTCCCTACCTGCCTGAGCTGCTG ATGACCGGGAGCAGAGGGGTCCCTACCTGCCTGAGCTGCTG < 41bp 1 0.317239022529273 1 0.224397629499435 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47374698 chr3:47374679 synonymous SNV . 0 2 hm5C_associated_SNPs_43983 0 0 0 0 1 KLHL18 chr3:47374647 3'AG 47374647 Downstream 33bp
chr19 45648517 45648517 1 + C T UCEC 45648504 + 45648484 45648524 41 GCCTGGACCTCGACCGTGAACCCAAGAAAGAGGCGGTGAGC GCCTGGACCTCGACCGTGAACCCAAGAAAGAGGTGGTGAGC < 41bp 1 0.467877089820979 1 0.109747707843781 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP1R37 ENSG00000104866 CDS Human protein_coding chr19:45648504 chr19:45648517 nonsynonymous SNV 0.999 1 34 hm5C_associated_SNPs_43984 0 0 1 0 1 PPP1R37 chr19:45648518 5'GT 45648518 Upstream 2bp
chr19 13054600 13054600 1 + G A UCEC 13054601 + 13054581 13054621 41 GAGGAAGAAGACAAGAAACGCAAAGAGGAGGAGGAGGCAGA GAGGAAGAAGACAAGAAACACAAAGAGGAGGAGGAGGCAGA < 41bp 1 0.583573292191997 1 0.576082766056061 experiment 0.832853415616006 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALR ENSG00000179218 CDS Human protein_coding chr19:13054601 chr19:13054600 nonsynonymous SNV 0.995 0 20 hm5C_associated_SNPs_43985 0 0 1 1 1 CALR chr19:13054527 3'AG 13054527 Downstream 74bp
chrX 47774347 47774347 1 + C T UCEC 47774348 + 47774328 47774368 41 AAATTTGGAATTAAGCCTTCCCAGAGGAGAATTTCTGGGAA AAATTTGGAATTAAGCCTTTCCAGAGGAGAATTTCTGGGAA < 41bp 1 0.29758287443409 1 0.795053839683533 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF81 ENSG00000197779 CDS Human protein_coding chrX:47774348 chrX:47774347 nonsynonymous SNV 0.636 1 20 hm5C_associated_SNPs_43988 0 0 1 0 1 ZNF81 chrX:47774323 3'AG 47774323 Downstream 25bp
chr1 76255000 76255000 1 + G A UCEC 76255012 + 76254992 76255032 41 CTAGTATCGGACATGATCCTCATCTTTTATACACTCTTAGT CTAGTATCAGACATGATCCTCATCTTTTATACACTCTTAGT < 41bp 1 0.199563790815449 1 0.0490074157714844 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76255012 chr1:76255000 nonsynonymous SNV 0.993 2 9 hm5C_associated_SNPs_43990 0 0 1 2 1 RABGGTB chr1:76255041 5'GT 76255041 Upstream 42bp
chr1 229783430 229783430 1 + G A UCEC 229783428 + 229783408 229783448 41 TCCCTTTGGACCATCTGAAGCCGCTGGAGTATGGAAGCGTC TCCCTTTGGACCATCTGAAGCCACTGGAGTATGGAAGCGTC < 41bp 1 0.183754693624634 1 0.195274710655212 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control URB2 ENSG00000135763 CDS Human protein_coding chr1:229783428 chr1:229783430 synonymous SNV . 0 23 hm5C_associated_SNPs_43991 0 0 1 0 1 URB2 chr1:229783499 5'GT 229783499 Upstream 70bp
chr1 156255397 156255397 1 + G A UCEC 156255378 + 156255358 156255398 41 CCGAAGACGATGCCAACCTGCTGCCTGAGAAAGCGGCCCGT CCGAAGACGATGCCAACCTGCTGCCTGAGAAAGCGGCCCAT < 41bp 1 0.376673850516378 1 0.132362127304077 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM79 ENSG00000163472 CDS Human protein_coding chr1:156255378 chr1:156255397 nonsynonymous SNV 0.604 1 40 hm5C_associated_SNPs_43993 0 0 0 0 1 TMEM79 chr1:156255316 3'AG 156255316 Downstream 82bp
chr9 134382806 134382806 1 + C T UCEC 134382812 + 134382792 134382832 41 GCTGCCAGCACTCGCGGGGGCCTTGTCGGTCCCCATGGCCT GCTGCCAGCACTCGTGGGGGCCTTGTCGGTCCCCATGGCCT < 41bp 1 0.0576256505741867 1 0.0443802177906036 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control POMT1 ENSG00000130714 CDS Human protein_coding chr9:134382812 chr9:134382806 nonsynonymous SNV 0.002 1 15 hm5C_associated_SNPs_43994 0 0 1 0 2 POMT1 chr9:134382755 3'AG 134382755 Downstream 52bp
chr9 134382806 134382806 1 + C T UCEC 134382812 + 134382792 134382832 41 GCTGCCAGCACTCGCGGGGGCCTTGTCGGTCCCCATGGCCT GCTGCCAGCACTCGTGGGGGCCTTGTCGGTCCCCATGGCCT < 41bp 1 0.0576256505741867 1 0.0443802177906036 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control POMT1 ENSG00000130714 CDS Human protein_coding chr9:134382812 chr9:134382806 nonsynonymous SNV 0.002 1 15 hm5C_associated_SNPs_43994 0 0 1 0 2 POMT1 chr9:134382901 5'GT 134382901 Upstream 96bp
chr4 184192351 184192351 1 + C A UCEC 184192371 + 184192351 184192391 41 CTGTATTTCAACCAAACCAGCCGTTAGTAGATTCTATAGAC ATGTATTTCAACCAAACCAGCCGTTAGTAGATTCTATAGAC < 41bp 1 0.027796499796573 1 0.0528261661529541 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WWC2 ENSG00000151718 CDS Human protein_coding chr4:184192371 chr4:184192351 nonsynonymous SNV 0.127 0 1 hm5C_associated_SNPs_43995 0 0 1 0 1 WWC2 chr4:184192394 5'GT 184192394 Upstream 44bp
chr17 78335550 78335550 1 + C T UCEC 78335559 + 78335539 78335579 41 CCCAAGAAGTTCGTGGACATCTTTCAGCAGACTCCTCTGGG CCCAAGAAGTTTGTGGACATCTTTCAGCAGACTCCTCTGGG < 41bp 1 0.0259443480068079 1 0.0501239597797394 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78335559 chr17:78335550 synonymous SNV . 0 12 hm5C_associated_SNPs_43998 0 0 1 0 1 RNF213 chr17:78335534 3'AG 78335534 Downstream 17bp
chr16 29842350 29842350 1 + G A UCEC 29842365 + 29842345 29842385 41 GGCTGGCCCAGGACCCCTTCCCCCTGTACCCAGGGGAGGTG GGCTGACCCAGGACCCCTTCCCCCTGTACCCAGGGGAGGTG < 41bp 1 0.267608275543625 1 0.0953201949596405 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29842365 chr16:29842350 nonsynonymous SNV 0.989 0 6 hm5C_associated_SNPs_43999 0 0 0 0 1 MVP chr16:29842394 5'GT 29842394 Upstream 45bp
chr19 13930219 13930219 1 + C A UCEC 13930238 + 13930218 13930258 41 CCCATGCACACCTGTGCCCGCTACCTGTTCACCGCACTGCT CACATGCACACCTGTGCCCGCTACCTGTTCACCGCACTGCT < 41bp 1 0.10763661219602 1 0.0483099222183228 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13930238 chr19:13930219 nonsynonymous SNV 0.994 4 2 hm5C_associated_SNPs_44001 0 0 1 0 2 ZSWIM4 chr19:13930171 3'AG 13930171 Downstream 49bp
chr19 13930219 13930219 1 + C A UCEC 13930238 + 13930218 13930258 41 CCCATGCACACCTGTGCCCGCTACCTGTTCACCGCACTGCT CACATGCACACCTGTGCCCGCTACCTGTTCACCGCACTGCT < 41bp 1 0.10763661219602 1 0.0483099222183228 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13930238 chr19:13930219 nonsynonymous SNV 0.994 4 2 hm5C_associated_SNPs_44001 0 0 1 0 2 ZSWIM4 chr19:13930306 5'GT 13930306 Upstream 88bp
chr20 39795165 39795165 1 + C T UCEC 39795148 + 39795128 39795168 41 GAGCCTGACCAGAGCACAGGCTGAGCACATGCTAATGCGCG GAGCCTGACCAGAGCACAGGCTGAGCACATGCTAATGTGCG < 41bp 1 0.313372384665807 1 0.171475291252136 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39795148 chr20:39795165 nonsynonymous SNV 0.969 5 38 hm5C_associated_SNPs_44002 0 0 1 0 2 PLCG1 chr20:39795116 3'AG 39795116 Downstream 50bp
chr20 39795165 39795165 1 + C T UCEC 39795148 + 39795128 39795168 41 GAGCCTGACCAGAGCACAGGCTGAGCACATGCTAATGCGCG GAGCCTGACCAGAGCACAGGCTGAGCACATGCTAATGTGCG < 41bp 1 0.313372384665807 1 0.171475291252136 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39795148 chr20:39795165 nonsynonymous SNV 0.969 5 38 hm5C_associated_SNPs_44002 0 0 1 0 2 PLCG1 chr20:39795235 5'GT 39795235 Upstream 71bp
chr11 986878 986878 1 + G A UCEC 986875 + 986855 986895 41 CGCTACCTGGCCCTGGAGAGCATGTGCACGCTGGCCAGCTC CGCTACCTGGCCCTGGAGAGCATATGCACGCTGGCCAGCTC < 41bp 1 0.196010040881724 1 0.329761862754822 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:986875 chr11:986878 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_44004 0 0 1 1 1 AP2A2 chr11:986785 3'AG 986785 Downstream 94bp
chr2 99179976 99179976 1 + G A UCEC 99179968 + 99179948 99179988 41 TACCCGCTGCTGACCACTCTCACCGACTGCGTGGCCATGAT TACCCGCTGCTGACCACTCTCACCGACTACGTGGCCATGAT < 41bp 1 0.653830481460544 1 0.389268189668655 experiment 0.692339037078913 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99179968 chr2:99179976 nonsynonymous SNV 0.998 4 29 hm5C_associated_SNPs_44005 0 0 1 0 1 INPP4A chr2:99179928 3'AG 99179928 Downstream 49bp
chr9 139751740 139751740 1 + C T UCEC 139751742 + 139751722 139751762 41 ACCAGCCTGGCTCCCATGCCCAGTACCAGGTGAGGCCTGGC ACCAGCCTGGCTCCCATGTCCAGTACCAGGTGAGGCCTGGC < 41bp 1 0.498797948552884 1 0.607147455215454 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139751742 chr9:139751740 nonsynonymous SNV 0.006 0 19 hm5C_associated_SNPs_44006 0 0 1 0 1 MAMDC4 chr9:139751750 5'GT 139751750 Upstream 11bp
chr20 3802803 3802803 1 + G A UCEC 3802800 + 3802780 3802820 41 CTCATTCACACCTTGAGGGCCCCGAATACTGAGGACACGGG CTCATTCACACCTTGAGGGCCCCAAATACTGAGGACACGGG < 41bp 1 0.194841470043073 1 0.0420036613941193 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5S1 ENSG00000125843 CDS Human protein_coding chr20:3802800 chr20:3802803 synonymous SNV . 0 24 hm5C_associated_SNPs_44009 0 0 1 0 1 AP5S1 chr20:3802749 3'AG 3802749 Downstream 55bp
chr2 71901335 71901335 1 + C A UCEC 71901331 + 71901311 71901351 41 TCCTCTTCCGGGTCAGGATGCCTTCTGGAGGCTGGACAAGA TCCTCTTCCGGGTCAGGATGCCTTATGGAGGCTGGACAAGA < 41bp 1 0.0805166781928626 1 0.0459335148334503 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71901331 chr2:71901335 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_44010 0 0 0 0 2 DYSF chr2:71901327 3'AG 71901327 Downstream 9bp
chr2 71901335 71901335 1 + C A UCEC 71901331 + 71901311 71901351 41 TCCTCTTCCGGGTCAGGATGCCTTCTGGAGGCTGGACAAGA TCCTCTTCCGGGTCAGGATGCCTTATGGAGGCTGGACAAGA < 41bp 1 0.0805166781928626 1 0.0459335148334503 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71901331 chr2:71901335 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_44010 0 0 0 0 2 DYSF chr2:71901426 5'GT 71901426 Upstream 92bp
chr2 234360616 234360616 1 + G A UCEC 234360615 + 234360595 234360635 41 GTATCTCCTTTACAGATGTCCGGGCTGGAATGTCTGGTTCC GTATCTCCTTTACAGATGTCCAGGCTGGAATGTCTGGTTCC < 41bp 1 0.303091086934419 1 0.482422143220901 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKD ENSG00000077044 CDS Human protein_coding chr2:234360615 chr2:234360616 nonsynonymous SNV 0.981 2 22 hm5C_associated_SNPs_44011 0 0 0 0 2 DGKD chr2:234360610 3'AG 234360610 Downstream 7bp
chr2 234360616 234360616 1 + G A UCEC 234360615 + 234360595 234360635 41 GTATCTCCTTTACAGATGTCCGGGCTGGAATGTCTGGTTCC GTATCTCCTTTACAGATGTCCAGGCTGGAATGTCTGGTTCC < 41bp 1 0.303091086934419 1 0.482422143220901 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKD ENSG00000077044 CDS Human protein_coding chr2:234360615 chr2:234360616 nonsynonymous SNV 0.981 2 22 hm5C_associated_SNPs_44011 0 0 0 0 2 DGKD chr2:234360706 5'GT 234360706 Upstream 91bp
chr1 150280580 150280580 1 + G A UCEC 150280582 + 150280562 150280602 41 AAAGCTATGAAAGGTGCCGGCGGATCTACAACATGGAAATG AAAGCTATGAAAGGTGCCAGCGGATCTACAACATGGAAATG < 41bp 1 0.493040242934249 1 0.732397198677063 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MRPS21 ENSG00000187145 CDS Human other chr1:150280582 chr1:150280580 nonsynonymous SNV 0.994 0 19 hm5C_associated_SNPs_44012 0 0 1 0 1 MRPS21 chr1:150280482 3'AG 150280482 Downstream 99bp
chr10 27469888 27469888 1 + C T UCEC 27469905 + 27469885 27469925 41 CTGCGGTAGACTGGTGGGCACTTGGAGTTTGCTTGTTTGAA CTGTGGTAGACTGGTGGGCACTTGGAGTTTGCTTGTTTGAA < 41bp 1 0.262722434451683 1 0.279394328594208 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MASTL ENSG00000120539 CDS Human protein_coding chr10:27469905 chr10:27469888 nonsynonymous SNV 0.945 3 4 hm5C_associated_SNPs_44013 0 0 1 0 1 MASTL chr10:27469882 3'AG 27469882 Downstream 7bp
chr16 70165252 70165252 1 + G A UCEC 70165261 + 70165241 70165281 41 GTTAGTATCCCGCTACATGCCTGCGAACACTTCTACCTCCT GTTAGTATCCCACTACATGCCTGCGAACACTTCTACCTCCT < 41bp 1 0.662157588141548 1 0.130303353071213 experiment 0.675684823716905 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70165261 chr16:70165252 synonymous SNV . 0 12 hm5C_associated_SNPs_44014 0 0 0 0 2 PDPR chr16:70165205 3'AG 70165205 Downstream 48bp
chr16 70165252 70165252 1 + G A UCEC 70165261 + 70165241 70165281 41 GTTAGTATCCCGCTACATGCCTGCGAACACTTCTACCTCCT GTTAGTATCCCACTACATGCCTGCGAACACTTCTACCTCCT < 41bp 1 0.662157588141548 1 0.130303353071213 experiment 0.675684823716905 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70165261 chr16:70165252 synonymous SNV . 0 12 hm5C_associated_SNPs_44014 0 0 0 0 2 PDPR chr16:70165322 5'GT 70165322 Upstream 71bp
chr22 32889239 32889239 1 + G T UCEC 32889253 + 32889233 32889273 41 TCCTGTGGAGGTTTTTATATCTGCGTGATTTTCGAGGTGAT TCCTGTTGAGGTTTTTATATCTGCGTGATTTTCGAGGTGAT < 41bp 1 0.531612790021845 1 0.423166483640671 experiment 0.93677441995631 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32889253 chr22:32889239 nonsynonymous SNV 0.995 4 7 hm5C_associated_SNPs_44015 0 0 1 0 1 FBXO7 chr22:32889268 5'GT 32889268 Upstream 30bp
chr19 11553320 11553320 1 + G T UCEC 11553302 + 11553282 11553322 41 GAGAAGCCAGAGAGAGAGGCCAAAGAGCAGCACCAGAAGCT GAGAAGCCAGAGAGAGAGGCCAAAGAGCAGCACCAGAATCT < 41bp 1 0.353872765681707 1 0.42739400267601 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553302 chr19:11553320 nonsynonymous SNV 0.996 1 39 hm5C_associated_SNPs_44016 0 0 1 0 1 PRKCSH chr19:11553330 5'GT 11553330 Upstream 11bp
chr19 11553320 11553320 1 + G T UCEC 11553314 + 11553294 11553334 41 AGAGAGGCCAAAGAGCAGCACCAGAAGCTGTGGGAAGGTAT AGAGAGGCCAAAGAGCAGCACCAGAATCTGTGGGAAGGTAT < 41bp 1 0.362109008881767 1 0.109503626823425 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553314 chr19:11553320 nonsynonymous SNV 0.996 1 27 hm5C_associated_SNPs_44017 0 0 1 0 1 PRKCSH chr19:11553330 5'GT 11553330 Upstream 11bp
chr6 160494422 160494422 1 + G T UCEC 160494408 + 160494388 160494428 41 TTCGTGTGCAGGCCTGAGGCCAGGCCAACCAATAGGCCCAT TTCGTGTGCAGGCCTGAGGCCAGGCCAACCAATATGCCCAT < 41bp 1 0.35681981254414 1 0.8258056640625 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160494408 chr6:160494422 nonsynonymous SNV 0.784 2 35 hm5C_associated_SNPs_44020 0 0 1 0 1 IGF2R chr6:160494501 5'GT 160494501 Upstream 80bp
chr1 183101606 183101606 1 + A G UCEC 183101623 + 183101603 183101643 41 ACAACCTGCTTCTGAGGACACTGGCAGGAGAAAATCAAACA ACAGCCTGCTTCTGAGGACACTGGCAGGAGAAAATCAAACA < 41bp 1 0.301559320458501 1 0.287742435932159 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183101623 chr1:183101606 nonsynonymous SNV 1.000 0 4 hm5C_associated_SNPs_44021 0 0 1 0 2 LAMC1 chr1:183101535 3'AG 183101535 Downstream 72bp
chr1 183101606 183101606 1 + A G UCEC 183101623 + 183101603 183101643 41 ACAACCTGCTTCTGAGGACACTGGCAGGAGAAAATCAAACA ACAGCCTGCTTCTGAGGACACTGGCAGGAGAAAATCAAACA < 41bp 1 0.301559320458501 1 0.287742435932159 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183101623 chr1:183101606 nonsynonymous SNV 1.000 0 4 hm5C_associated_SNPs_44021 0 0 1 0 2 LAMC1 chr1:183101672 5'GT 183101672 Upstream 67bp
chr6 161508794 161508794 1 + G A UCEC 161508811 + 161508791 161508831 41 TTTGCAGTTACTCAATGCAGCTGCAGGAAAGGACTGTTCAA TTTACAGTTACTCAATGCAGCTGCAGGAAAGGACTGTTCAA < 41bp 1 0.613802438796106 1 0.514565229415894 experiment 0.772395122407788 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161508811 chr6:161508794 synonymous SNV . 0 4 hm5C_associated_SNPs_44023 0 0 1 0 1 MAP3K4 chr6:161508720 3'AG 161508720 Downstream 75bp
chr3 158383128 158383128 1 + C T UCEC 158383132 + 158383112 158383152 41 TTCTTCTTTTAAAGAACGATCTGGAAAAATTTTCAAAAGGT TTCTTCTTTTAAAGAATGATCTGGAAAAATTTTCAAAAGGT < 41bp 1 0.67482724611247 1 0.579138576984406 experiment 0.65034550777506 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GFM1 ENSG00000168827 CDS Human protein_coding chr3:158383132 chr3:158383128 synonymous SNV . 0 17 hm5C_associated_SNPs_44025 0 0 0 0 1 GFM1 chr3:158383126 3'AG 158383126 Downstream 3bp
chr9 133506095 133506095 1 + C T UCEC 133506078 + 133506058 133506098 41 CGTGGAGCTTCAGAGGAACCCCCCTCCCAACAGCGACCCCA CGTGGAGCTTCAGAGGAACCCCCCTCCCAACAGCGACTCCA < 41bp 1 0.284327067493059 1 0.0879555344581604 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133506078 chr9:133506095 nonsynonymous SNV 0.999 3 38 hm5C_associated_SNPs_44026 0 0 1 0 2 FUBP3 chr9:133506015 3'AG 133506015 Downstream 81bp
chr9 133506095 133506095 1 + C T UCEC 133506078 + 133506058 133506098 41 CGTGGAGCTTCAGAGGAACCCCCCTCCCAACAGCGACCCCA CGTGGAGCTTCAGAGGAACCCCCCTCCCAACAGCGACTCCA < 41bp 1 0.284327067493059 1 0.0879555344581604 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133506078 chr9:133506095 nonsynonymous SNV 0.999 3 38 hm5C_associated_SNPs_44026 0 0 1 0 2 FUBP3 chr9:133506175 5'GT 133506175 Upstream 81bp
chr9 133506095 133506095 1 + C T UCEC 133506080 + 133506060 133506100 41 TGGAGCTTCAGAGGAACCCCCCTCCCAACAGCGACCCCAAC TGGAGCTTCAGAGGAACCCCCCTCCCAACAGCGACTCCAAC < 41bp 1 0.0295746637297017 1 0.268026411533356 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133506080 chr9:133506095 nonsynonymous SNV 0.999 3 36 hm5C_associated_SNPs_44027 0 0 1 0 2 FUBP3 chr9:133506015 3'AG 133506015 Downstream 81bp
chr9 133506095 133506095 1 + C T UCEC 133506080 + 133506060 133506100 41 TGGAGCTTCAGAGGAACCCCCCTCCCAACAGCGACCCCAAC TGGAGCTTCAGAGGAACCCCCCTCCCAACAGCGACTCCAAC < 41bp 1 0.0295746637297017 1 0.268026411533356 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133506080 chr9:133506095 nonsynonymous SNV 0.999 3 36 hm5C_associated_SNPs_44027 0 0 1 0 2 FUBP3 chr9:133506175 5'GT 133506175 Upstream 81bp
chr20 35835747 35835747 1 + C T UCEC 35835730 + 35835710 35835750 41 GCAAGAAGAACTTTGAGTCCCTCTCCGAAGCCTTCAGCGTG GCAAGAAGAACTTTGAGTCCCTCTCCGAAGCCTTCAGTGTG < 41bp 1 0.206769005854187 1 0.0480694770812988 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35835730 chr20:35835747 synonymous SNV . 0 38 hm5C_associated_SNPs_44029 0 0 1 0 1 RPN2 chr20:35835676 3'AG 35835676 Downstream 72bp
chr6 139487469 139487469 1 + A G UCEC 139487463 + 139487443 139487483 41 GATCTGCAGCTTCGGTAGGCCGGTGGACCTGGAGAAGGACG GATCTGCAGCTTCGGTAGGCCGGTGGGCCTGGAGAAGGACG < 41bp 1 0.556894411119041 1 0.502622067928314 experiment 0.886211177761918 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECA ENSG00000112406 CDS Human protein_coding chr6:139487463 chr6:139487469 nonsynonymous SNV 0.999 2 27 hm5C_associated_SNPs_44031 0 0 1 0 1 HECA chr6:139487421 3'AG 139487421 Downstream 49bp
chr3 32483440 32483440 1 + G A UCEC 32483437 + 32483417 32483457 41 TTTGCGACTTGATAATGATCCTCGCCTTTTACCTGGTCCAC TTTGCGACTTGATAATGATCCTCACCTTTTACCTGGTCCAC < 41bp 1 0.263767917004247 1 0.0865810215473175 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32483437 chr3:32483440 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_44032 0 0 1 0 1 CMTM7 chr3:32483505 5'GT 32483505 Upstream 66bp
chr19 49652958 49652958 1 + G A UCEC 49652948 + 49652928 49652968 41 GAGCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAG GAGCCCTGGGCTCTCCGGGGCTCCCTCTCCACAAGCTGCAG < 41bp 1 0.0893870045744738 1 0.116752028465271 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652948 chr19:49652958 nonsynonymous SNV 0.999 3 31 hm5C_associated_SNPs_44033 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 18bp
chr19 49652958 49652958 1 + G A UCEC 49652950 + 49652930 49652970 41 GCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCC GCCCTGGGCTCTCCGGGGCTCCCTCTCCACAAGCTGCAGCC < 41bp 1 0.0568481865924743 1 0.0710450112819672 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652950 chr19:49652958 nonsynonymous SNV 0.999 3 29 hm5C_associated_SNPs_44034 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 18bp
chr19 49652958 49652958 1 + G A UCEC 49652951 + 49652931 49652971 41 CCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCCA CCCTGGGCTCTCCGGGGCTCCCTCTCCACAAGCTGCAGCCA < 41bp 1 0.0401948066706892 1 0.0591782033443451 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652951 chr19:49652958 nonsynonymous SNV 0.999 3 28 hm5C_associated_SNPs_44035 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 18bp
chr19 49652958 49652958 1 + G A UCEC 49652952 + 49652932 49652972 41 CCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCCAG CCTGGGCTCTCCGGGGCTCCCTCTCCACAAGCTGCAGCCAG < 41bp 1 0.227903767349475 1 0.7325279712677 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652952 chr19:49652958 nonsynonymous SNV 0.999 3 27 hm5C_associated_SNPs_44036 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 18bp
chr7 87005035 87005035 1 + G A UCEC 87005024 + 87005004 87005044 41 CAGCATTAACTAGTGAGGAGCGAACTCGATGGGCTAAGGTT CAGCATTAACTAGTGAGGAGCGAACTCGATGAGCTAAGGTT < 41bp 1 0.15230198730842 1 0.371693015098572 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CROT ENSG00000005469 CDS Human protein_coding chr7:87005024 chr7:87005035 stopgain 0.997 1 32 hm5C_associated_SNPs_44037 0 0 1 0 2 CROT chr7:87004948 3'AG 87004948 Downstream 88bp
chr7 87005035 87005035 1 + G A UCEC 87005024 + 87005004 87005044 41 CAGCATTAACTAGTGAGGAGCGAACTCGATGGGCTAAGGTT CAGCATTAACTAGTGAGGAGCGAACTCGATGAGCTAAGGTT < 41bp 1 0.15230198730842 1 0.371693015098572 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CROT ENSG00000005469 CDS Human protein_coding chr7:87005024 chr7:87005035 stopgain 0.997 1 32 hm5C_associated_SNPs_44037 0 0 1 0 2 CROT chr7:87005041 5'GT 87005041 Upstream 7bp
chr16 19460917 19460917 1 + C T UCEC 19460903 + 19460883 19460923 41 TGAAAGTGGTCCTGTCCATGCTTATGGAAACCCACCATTGT TGAAAGTGGTCCTGTCCATGCTTATGGAAACCCATCATTGT < 41bp 1 0.138328370864136 1 0.0841471552848816 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMC5 ENSG00000103534 CDS Human protein_coding chr16:19460903 chr16:19460917 nonsynonymous SNV 0.007 0 35 hm5C_associated_SNPs_44038 0 0 0 0 2 TMC5 chr16:19460864 3'AG 19460864 Downstream 54bp
chr16 19460917 19460917 1 + C T UCEC 19460903 + 19460883 19460923 41 TGAAAGTGGTCCTGTCCATGCTTATGGAAACCCACCATTGT TGAAAGTGGTCCTGTCCATGCTTATGGAAACCCATCATTGT < 41bp 1 0.138328370864136 1 0.0841471552848816 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMC5 ENSG00000103534 CDS Human protein_coding chr16:19460903 chr16:19460917 nonsynonymous SNV 0.007 0 35 hm5C_associated_SNPs_44038 0 0 0 0 2 TMC5 chr16:19460953 5'GT 19460953 Upstream 37bp
chr5 109155393 109155393 1 + G A UCEC 109155379 + 109155359 109155399 41 ATCTTTTAAAGATCTCTTTTCGAGCACATATACCGCCATTG ATCTTTTAAAGATCTCTTTTCGAGCACATATACCACCATTG < 41bp 1 0.174387635992797 1 0.568516314029694 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAN2A1 ENSG00000112893 CDS Human protein_coding chr5:109155379 chr5:109155393 synonymous SNV . 0 35 hm5C_associated_SNPs_44039 0 0 1 0 1 MAN2A1 chr5:109155370 3'AG 109155370 Downstream 24bp
chr18 74620325 74620325 1 + G T UCEC 74620335 + 74620315 74620355 41 AGCCTCGATAGATGACAGCACTGTAGACCAGCAGAGCATGC AGCCTCGATATATGACAGCACTGTAGACCAGCAGAGCATGC < 41bp 1 0.420147728731925 1 0.117629885673523 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74620335 chr18:74620325 nonsynonymous SNV 0.002 1 11 hm5C_associated_SNPs_44040 0 0 1 0 1 ZNF236 chr18:74620276 3'AG 74620276 Downstream 50bp
chr19 10935770 10935770 1 + C A UCEC 10935765 + 10935745 10935785 41 GATGGGGCCCAGGAGAACACCTTCTCCATGGACCCCCAACT GATGGGGCCCAGGAGAACACCTTCTACATGGACCCCCAACT < 41bp 1 0.18129933603092 1 0.199826955795288 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10935765 chr19:10935770 nonsynonymous SNV 1.000 5 26 hm5C_associated_SNPs_44042 0 0 1 0 1 DNM2 chr19:10935733 3'AG 10935733 Downstream 38bp
chr16 1793361 1793361 1 + G A UCEC 1793369 + 1793349 1793389 41 ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACG ACCTCCCTGAACATGTTCCCCCTGGCTGACGGCACGGTACG < 41bp 1 0.124173960699879 1 0.13775622844696 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1793369 chr16:1793361 nonsynonymous SNV 0.978 2 13 hm5C_associated_SNPs_44043 0 0 1 0 2 MAPK8IP3 chr16:1793333 3'AG 1793333 Downstream 29bp
chr16 1793361 1793361 1 + G A UCEC 1793369 + 1793349 1793389 41 ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACG ACCTCCCTGAACATGTTCCCCCTGGCTGACGGCACGGTACG < 41bp 1 0.124173960699879 1 0.13775622844696 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1793369 chr16:1793361 nonsynonymous SNV 0.978 2 13 hm5C_associated_SNPs_44043 0 0 1 0 2 MAPK8IP3 chr16:1793336 3'AG 1793336 Downstream 26bp
chr7 129093125 129093125 1 + G A UCEC 129093106 + 129093086 129093126 41 ATTCAGAGGTCGATGTGCTACACTGGTCCAGGTACAACTGC ATTCAGAGGTCGATGTGCTACACTGGTCCAGGTACAACTAC < 41bp 1 0.641858843028806 1 0.104128509759903 experiment 0.716282313942387 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129093106 chr7:129093125 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_44044 0 0 1 0 2 STRIP2 chr7:129093068 3'AG 129093068 Downstream 58bp
chr7 129093125 129093125 1 + G A UCEC 129093106 + 129093086 129093126 41 ATTCAGAGGTCGATGTGCTACACTGGTCCAGGTACAACTGC ATTCAGAGGTCGATGTGCTACACTGGTCCAGGTACAACTAC < 41bp 1 0.641858843028806 1 0.104128509759903 experiment 0.716282313942387 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129093106 chr7:129093125 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_44044 0 0 1 0 2 STRIP2 chr7:129093188 5'GT 129093188 Upstream 64bp
chr4 56230300 56230300 1 + C T UCEC 56230318 + 56230298 56230338 41 TACGAAGACTCTTCGAGTGCCTCTACGTCAGTGTCTTCTCC TATGAAGACTCTTCGAGTGCCTCTACGTCAGTGTCTTCTCC < 41bp 1 0.549657263970593 1 0.222426980733871 experiment 0.900685472058813 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control SRD5A3 ENSG00000128039 CDS Human protein_coding chr4:56230318 chr4:56230300 stopgain 0.005 1 3 hm5C_associated_SNPs_44046 1 0 0 0 1 SRD5A3 chr4:56230241 3'AG 56230241 Downstream 60bp
chr1 114450783 114450783 1 + C T UCEC 114450803 + 114450783 114450823 41 CGAAAACACCCACAACATAACATAAAGATTGGTGAGTTGTT TGAAAACACCCACAACATAACATAAAGATTGGTGAGTTGTT < 41bp 1 0.31682066656592 1 0.0789452493190765 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCLRE1B ENSG00000118655 CDS Human protein_coding chr1:114450803 chr1:114450783 stopgain 0.910 1 1 hm5C_associated_SNPs_44050 0 0 0 0 1 DCLRE1B chr1:114450813 5'GT 114450813 Upstream 31bp
chr17 16329475 16329475 1 + C T UCEC 16329457 + 16329437 16329477 41 GAGTTTTCAGGACTGAGCCACCTTTCCCGAAAGTTCACCGA GAGTTTTCAGGACTGAGCCACCTTTCCCGAAAGTTCACTGA < 41bp 1 0.00773526145593274 1 0.0477001965045929 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16329457 chr17:16329475 synonymous SNV . 0 39 hm5C_associated_SNPs_44051 0 0 0 0 1 TRPV2 chr17:16329413 3'AG 16329413 Downstream 63bp
chr4 74308049 74308049 1 + G A UCEC 74308041 + 74308021 74308061 41 ATGAGATAGCAAGAAGGCATCCCTTCCTGTATGCACCTACA ATGAGATAGCAAGAAGGCATCCCTTCCTATATGCACCTACA < 41bp 1 0.0656978140241051 1 0.0741245448589325 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AFP ENSG00000081051 CDS Human protein_coding chr4:74308041 chr4:74308049 synonymous SNV . 0 29 hm5C_associated_SNPs_44052 0 0 1 0 2 AFP chr4:74308013 3'AG 74308013 Downstream 37bp
chr4 74308049 74308049 1 + G A UCEC 74308041 + 74308021 74308061 41 ATGAGATAGCAAGAAGGCATCCCTTCCTGTATGCACCTACA ATGAGATAGCAAGAAGGCATCCCTTCCTATATGCACCTACA < 41bp 1 0.0656978140241051 1 0.0741245448589325 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AFP ENSG00000081051 CDS Human protein_coding chr4:74308041 chr4:74308049 synonymous SNV . 0 29 hm5C_associated_SNPs_44052 0 0 1 0 2 AFP chr4:74308145 5'GT 74308145 Upstream 97bp
chr5 134154671 134154671 1 + G A UCEC 134154670 + 134154650 134154690 41 AAGAACCCAAGGAAGGCGAGCGGAAGATTTACTTGGCAATT AAGAACCCAAGGAAGGCGAGCAGAAGATTTACTTGGCAATT < 41bp 1 0.573111907938028 1 0.760170936584473 experiment 0.853776184123943 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134154670 chr5:134154671 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_44056 0 0 1 0 1 DDX46 chr5:134154694 5'GT 134154694 Upstream 24bp
chr1 110735224 110735224 1 + C A UCEC 110735227 + 110735207 110735247 41 CACCTGACCACAAAGGACTACATGGAGATGTACAATGTCAT CACCTGACCACAAAGGAATACATGGAGATGTACAATGTCAT < 41bp 1 0.15514563753126 1 0.0640693008899689 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC6A17 ENSG00000197106 CDS Human protein_coding chr1:110735227 chr1:110735224 nonsynonymous SNV 0.999 1 18 hm5C_associated_SNPs_44058 0 0 0 0 1 SLC6A17 chr1:110735320 5'GT 110735320 Upstream 97bp
chr8 121259921 121259921 1 + A G UCEC 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTACGTGGGGCCCCCCATCTTCCCCGGTGAAAGGCTATA < 41bp 1 0.0945669943213522 1 0.0718520879745483 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259921 nonsynonymous SNV 0.705 4 12 hm5C_associated_SNPs_44059 0 0 0 0 2 COL14A1 chr8:121259852 3'AG 121259852 Downstream 70bp
chr8 121259921 121259921 1 + A G UCEC 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTACGTGGGGCCCCCCATCTTCCCCGGTGAAAGGCTATA < 41bp 1 0.0945669943213522 1 0.0718520879745483 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259921 nonsynonymous SNV 0.705 4 12 hm5C_associated_SNPs_44059 0 0 0 0 2 COL14A1 chr8:121259974 5'GT 121259974 Upstream 54bp
chr8 121259921 121259921 1 + A G UCEC 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGGCCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT < 41bp 1 0.420228345411091 1 0.206842064857483 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259921 nonsynonymous SNV 0.705 4 8 hm5C_associated_SNPs_44060 0 0 0 0 2 COL14A1 chr8:121259852 3'AG 121259852 Downstream 70bp
chr8 121259921 121259921 1 + A G UCEC 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGGCCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT < 41bp 1 0.420228345411091 1 0.206842064857483 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259921 nonsynonymous SNV 0.705 4 8 hm5C_associated_SNPs_44060 0 0 0 0 2 COL14A1 chr8:121259974 5'GT 121259974 Upstream 54bp
chr1 25679460 25679460 1 + C T UCEC 25679441 + 25679421 25679461 41 TGATTGCATCTATGTGGATTCTTTTTGGAGGTTATGTTGCT TGATTGCATCTATGTGGATTCTTTTTGGAGGTTATGTTGTT < 41bp 1 0.100702089221971 1 0.0288422703742981 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25679441 chr1:25679460 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_44061 0 0 1 0 2 TMEM50A chr1:25679373 3'AG 25679373 Downstream 88bp
chr1 25679460 25679460 1 + C T UCEC 25679441 + 25679421 25679461 41 TGATTGCATCTATGTGGATTCTTTTTGGAGGTTATGTTGCT TGATTGCATCTATGTGGATTCTTTTTGGAGGTTATGTTGTT < 41bp 1 0.100702089221971 1 0.0288422703742981 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25679441 chr1:25679460 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_44061 0 0 1 0 2 TMEM50A chr1:25679465 5'GT 25679465 Upstream 6bp
chr11 45926282 45926282 1 + G A UCEC 45926276 + 45926256 45926296 41 TTGTCACCTGTAGATTGCCACCACCCGCCGGCTCACCGTGC TTGTCACCTGTAGATTGCCACCACCCACCGGCTCACCGTGC < 41bp 1 0.0373750275482419 1 0.080421507358551 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926276 chr11:45926282 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_44062 0 0 0 0 1 MAPK8IP1 chr11:45926269 3'AG 45926269 Downstream 14bp
chr11 45926282 45926282 1 + G A UCEC 45926280 + 45926260 45926300 41 CACCTGTAGATTGCCACCACCCGCCGGCTCACCGTGCACTT CACCTGTAGATTGCCACCACCCACCGGCTCACCGTGCACTT < 41bp 1 0.0651040857454924 1 0.0234695374965668 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926280 chr11:45926282 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_44063 0 0 0 0 1 MAPK8IP1 chr11:45926269 3'AG 45926269 Downstream 14bp
chr11 45926282 45926282 1 + G A UCEC 45926291 + 45926271 45926311 41 TGCCACCACCCGCCGGCTCACCGTGCACTTTAACCCGCCCT TGCCACCACCCACCGGCTCACCGTGCACTTTAACCCGCCCT < 41bp 1 0.101882486398518 1 0.497727155685425 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926291 chr11:45926282 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_44064 0 0 0 0 1 MAPK8IP1 chr11:45926269 3'AG 45926269 Downstream 14bp
chr20 57289028 57289028 1 + A C UCEC 57289032 + 57289012 57289052 41 AACAGCGCTGAGTGGGAGGCCGCCTGTGTGAAGGCGGGCAG AACAGCGCTGAGTGGGCGGCCGCCTGTGTGAAGGCGGGCAG < 41bp 1 0.754576834342239 1 0.597207188606262 experiment 0.490846331315521 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57289032 chr20:57289028 nonsynonymous SNV 0.843 4 17 hm5C_associated_SNPs_44065 0 0 1 1 1 NPEPL1 chr20:57288973 3'AG 57288973 Downstream 56bp
chr17 48757186 48757186 1 + C T UCEC 48757176 + 48757156 48757196 41 CAGGTGACATTTGCTCTGAACTGGATGATACGAATGATGTC CAGGTGACATTTGCTCTGAACTGGATGATATGAATGATGTC < 41bp 1 0.510391189842979 1 0.475229322910309 experiment 0.979217620314042 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48757176 chr17:48757186 stopgain 0.924 1 31 hm5C_associated_SNPs_44066 0 0 0 0 2 ABCC3 chr17:48757159 3'AG 48757159 Downstream 28bp
chr17 48757186 48757186 1 + C T UCEC 48757176 + 48757156 48757196 41 CAGGTGACATTTGCTCTGAACTGGATGATACGAATGATGTC CAGGTGACATTTGCTCTGAACTGGATGATATGAATGATGTC < 41bp 1 0.510391189842979 1 0.475229322910309 experiment 0.979217620314042 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48757176 chr17:48757186 stopgain 0.924 1 31 hm5C_associated_SNPs_44066 0 0 0 0 2 ABCC3 chr17:48757260 5'GT 48757260 Upstream 75bp
chr10 121436039 121436039 1 + C T UCEC 121436044 + 121436024 121436064 41 AAACCAGAAAGTAAGCCAGGCCCAGTTGGACCAGAACTCCC AAACCAGAAAGTAAGTCAGGCCCAGTTGGACCAGAACTCCC < 41bp 1 0.19471395225172 1 0.161921471357346 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAG3 ENSG00000151929 CDS Human protein_coding chr10:121436044 chr10:121436039 nonsynonymous SNV 1.000 0 16 hm5C_associated_SNPs_44067 0 0 1 0 2 BAG3 chr10:121435976 3'AG 121435976 Downstream 64bp
chr10 121436039 121436039 1 + C T UCEC 121436044 + 121436024 121436064 41 AAACCAGAAAGTAAGCCAGGCCCAGTTGGACCAGAACTCCC AAACCAGAAAGTAAGTCAGGCCCAGTTGGACCAGAACTCCC < 41bp 1 0.19471395225172 1 0.161921471357346 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAG3 ENSG00000151929 CDS Human protein_coding chr10:121436044 chr10:121436039 nonsynonymous SNV 1.000 0 16 hm5C_associated_SNPs_44067 0 0 1 0 2 BAG3 chr10:121435979 3'AG 121435979 Downstream 61bp
chr11 68705772 68705772 1 + T C UCEC 68705792 + 68705772 68705812 41 TTCTGCCAGCTCTGCAGCCGCCGCTACTGCCTCAGCCACCA CTCTGCCAGCTCTGCAGCCGCCGCTACTGCCTCAGCCACCA < 41bp 1 0.218295710593139 1 0.278259962797165 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68705792 chr11:68705772 nonsynonymous SNV 0.900 0 1 hm5C_associated_SNPs_44068 0 0 1 0 1 IGHMBP2 chr11:68705822 5'GT 68705822 Upstream 51bp
chr20 37161462 37161462 1 + C T UCEC 37161476 + 37161456 37161496 41 GACTCCCGATAGTGAGAGACCTGCTCAAGCTCTCTTAAGAG GACTCCTGATAGTGAGAGACCTGCTCAAGCTCTCTTAAGAG < 41bp 1 0.280923229090452 1 0.578992962837219 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37161476 chr20:37161462 synonymous SNV . 0 7 hm5C_associated_SNPs_44069 0 0 1 0 1 RALGAPB chr20:37161502 5'GT 37161502 Upstream 41bp
chr7 142459878 142459878 1 + G A UCEC 142459862 + 142459842 142459882 41 CTCATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGA CTCATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCAGTGA < 41bp 1 0.313090829115751 1 0.185269862413406 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459862 chr7:142459878 nonsynonymous SNV 0.018 0 37 hm5C_associated_SNPs_44070 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 1bp
chr7 142459878 142459878 1 + G A UCEC 142459864 + 142459844 142459884 41 CATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGT CATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCAGTGAGT < 41bp 1 0.704506189843751 1 0.473174333572388 experiment 0.590987620312498 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459864 chr7:142459878 nonsynonymous SNV 0.018 0 35 hm5C_associated_SNPs_44071 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 1bp
chr7 142459878 142459878 1 + G A UCEC 142459867 + 142459847 142459887 41 CTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGG CTCTGGCTGGGGCAACACTGCGAGCTCTGGCAGTGAGTGGG < 41bp 1 0.397934223770833 1 0.5132936835289 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459867 chr7:142459878 nonsynonymous SNV 0.018 0 32 hm5C_associated_SNPs_44072 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 1bp
chr7 142459878 142459878 1 + G A UCEC 142459871 + 142459851 142459891 41 GGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCC GGCTGGGGCAACACTGCGAGCTCTGGCAGTGAGTGGGACCC < 41bp 1 0.382061665765643 1 0.108607560396194 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459871 chr7:142459878 nonsynonymous SNV 0.018 0 28 hm5C_associated_SNPs_44073 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 1bp
chr7 142459878 142459878 1 + G A UCEC 142459873 + 142459853 142459893 41 CTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCCTT CTGGGGCAACACTGCGAGCTCTGGCAGTGAGTGGGACCCTT < 41bp 1 0.581669874087698 1 0.510769009590149 experiment 0.836660251824604 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459873 chr7:142459878 nonsynonymous SNV 0.018 0 26 hm5C_associated_SNPs_44074 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 1bp
chr7 142459878 142459878 1 + G A UCEC 142459877 + 142459857 142459897 41 GGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCCTTAGTC GGCAACACTGCGAGCTCTGGCAGTGAGTGGGACCCTTAGTC < 41bp 1 0.425718268501924 1 0.738493084907532 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459877 chr7:142459878 nonsynonymous SNV 0.018 0 22 hm5C_associated_SNPs_44075 0 0 0 0 1 PRSS1 chr7:142459878 5'GT 142459878 Upstream 1bp
chr3 142408619 142408619 1 + C A UCEC 142408604 + 142408584 142408624 41 CTAATTTGTTTAACACATACCCGTGCCTGCACAAGCCGAAT CTAATTTGTTTAACACATACCCGTGCCTGCACAAGACGAAT < 41bp 1 0.111257007884153 1 0.0737068951129913 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PLS1 ENSG00000120756 CDS Human protein_coding chr3:142408604 chr3:142408619 nonsynonymous SNV 0.995 1 36 hm5C_associated_SNPs_44076 0 0 0 0 1 PLS1 chr3:142408655 5'GT 142408655 Upstream 37bp
chr7 819722 819722 1 + A G UCEC 819711 + 819691 819731 41 TCCTACTATCAGAGCAGTGTCCAGTACCTGTACCGAGAGTT TCCTACTATCAGAGCAGTGTCCAGTACCTGTGCCGAGAGTT < 41bp 1 0.150901976168578 1 0.14024430513382 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:819711 chr7:819722 nonsynonymous SNV 0.336 1 32 hm5C_associated_SNPs_44078 0 0 1 0 1 DNAAF5 chr7:819781 5'GT 819781 Upstream 60bp
chr2 162226622 162226622 1 + T C UCEC 162226642 + 162226622 162226662 41 TCAGTGTGGAGGCAGTTGATCCAGTGTTCCAAGCTAAAATG CCAGTGTGGAGGCAGTTGATCCAGTGTTCCAAGCTAAAATG < 41bp 1 0.517858019615982 1 0.239958316087723 experiment 0.964283960768037 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMD14 ENSG00000115233 CDS Human protein_coding chr2:162226642 chr2:162226622 nonsynonymous SNV 0.997 2 1 hm5C_associated_SNPs_44079 0 0 1 0 1 PSMD14 chr2:162226688 5'GT 162226688 Upstream 67bp
chr6 30860279 30860279 1 + G A UCEC 30860273 + 30860253 30860293 41 TTTCTGCAGTGCCGCTTCCTCTTTGCGGGGCCCTGGTTACT TTTCTGCAGTGCCGCTTCCTCTTTGCAGGGCCCTGGTTACT < 41bp 1 0.282674777932007 1 0.127789080142975 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDR1 ENSG00000204580 CDS Human protein_coding chr6:30860273 chr6:30860279 synonymous SNV . 0 27 hm5C_associated_SNPs_44080 0 0 1 0 1 DDR1 chr6:30860319 5'GT 30860319 Upstream 41bp
chr19 11105617 11105617 1 + G A UCEC 11105627 + 11105607 11105647 41 ATGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACGAGCGG ATGCCAACACAGAGCGGGAGCAGAAGAAAGAGAACGAGCGG < 41bp 1 0.615512602926222 1 0.546581447124481 experiment 0.768974794147555 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11105627 chr19:11105617 synonymous SNV . 0 11 hm5C_associated_SNPs_44081 0 0 1 0 1 SMARCA4 chr19:11105677 5'GT 11105677 Upstream 61bp
chr1 109806906 109806906 1 + T C UCEC 109806891 + 109806871 109806911 41 AGAGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCA AGAGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGCCTGCA < 41bp 1 0.0480163516822035 1 0.0801582038402557 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806891 chr1:109806906 synonymous SNV . 0 36 hm5C_associated_SNPs_44086 0 0 1 0 1 CELSR2 chr1:109806987 5'GT 109806987 Upstream 82bp
chr1 109806906 109806906 1 + T C UCEC 109806892 + 109806872 109806912 41 GAGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCAC GAGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGCCTGCAC < 41bp 1 0.191195264568588 1 0.392038941383362 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806892 chr1:109806906 synonymous SNV . 0 35 hm5C_associated_SNPs_44087 0 0 1 0 1 CELSR2 chr1:109806987 5'GT 109806987 Upstream 82bp
chr1 109806906 109806906 1 + T C UCEC 109806893 + 109806873 109806913 41 AGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCACC AGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGCCTGCACC < 41bp 1 0.261097880512903 1 0.255912303924561 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806893 chr1:109806906 synonymous SNV . 0 34 hm5C_associated_SNPs_44088 0 0 1 0 1 CELSR2 chr1:109806987 5'GT 109806987 Upstream 82bp
chr1 109806906 109806906 1 + T C UCEC 109806894 + 109806874 109806914 41 GCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCACCT GCAGAGGGCAACCTGGGCCCCCGGCTGCATGGCCTGCACCT < 41bp 1 0.149675715221607 1 0.416567921638489 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806894 chr1:109806906 synonymous SNV . 0 33 hm5C_associated_SNPs_44089 0 0 1 0 1 CELSR2 chr1:109806987 5'GT 109806987 Upstream 82bp
chr1 109806906 109806906 1 + T C UCEC 109806895 + 109806875 109806915 41 CAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCACCTG CAGAGGGCAACCTGGGCCCCCGGCTGCATGGCCTGCACCTG < 41bp 1 0.255680015046276 1 0.598412752151489 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806895 chr1:109806906 synonymous SNV . 0 32 hm5C_associated_SNPs_44090 0 0 1 0 1 CELSR2 chr1:109806987 5'GT 109806987 Upstream 82bp
chr11 44092843 44092843 1 + G A UCEC 44092826 + 44092806 44092846 41 GGCATCATTAACTTGGGCACCAGTGAGAACAAACTCTGCTT GGCATCATTAACTTGGGCACCAGTGAGAACAAACTCTACTT < 41bp 1 0.36532982176205 1 0.503534078598022 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACCS ENSG00000110455 CDS Human protein_coding chr11:44092826 chr11:44092843 nonsynonymous SNV 0.996 4 38 hm5C_associated_SNPs_44093 0 0 1 0 2 ACCS chr11:44092806 3'AG 44092806 Downstream 38bp
chr11 44092843 44092843 1 + G A UCEC 44092826 + 44092806 44092846 41 GGCATCATTAACTTGGGCACCAGTGAGAACAAACTCTGCTT GGCATCATTAACTTGGGCACCAGTGAGAACAAACTCTACTT < 41bp 1 0.36532982176205 1 0.503534078598022 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACCS ENSG00000110455 CDS Human protein_coding chr11:44092826 chr11:44092843 nonsynonymous SNV 0.996 4 38 hm5C_associated_SNPs_44093 0 0 1 0 2 ACCS chr11:44092865 5'GT 44092865 Upstream 23bp
chr10 5937103 5937103 1 + G A UCEC 5937118 + 5937098 5937138 41 GAGATGCCAGAGGACGAGTGCCCACTTGCTGGTCTTCACAG GAGATACCAGAGGACGAGTGCCCACTTGCTGGTCTTCACAG < 41bp 1 0.129652827460749 1 0.0684912502765656 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5937118 chr10:5937103 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_44095 0 0 0 0 2 FBXO18 chr10:5937019 3'AG 5937019 Downstream 85bp
chr10 5937103 5937103 1 + G A UCEC 5937118 + 5937098 5937138 41 GAGATGCCAGAGGACGAGTGCCCACTTGCTGGTCTTCACAG GAGATACCAGAGGACGAGTGCCCACTTGCTGGTCTTCACAG < 41bp 1 0.129652827460749 1 0.0684912502765656 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5937118 chr10:5937103 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_44095 0 0 0 0 2 FBXO18 chr10:5937150 5'GT 5937150 Upstream 48bp
chr6 110533354 110533354 1 + A G UCEC 110533371 + 110533351 110533391 41 ACTATCAAGGCAGGTCCTATCTTCACATACCTCAGGATGTT ACTGTCAAGGCAGGTCCTATCTTCACATACCTCAGGATGTT < 41bp 1 0.758958264918017 1 0.728877067565918 experiment 0.482083470163966 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDC40 ENSG00000168438 CDS Human protein_coding chr6:110533371 chr6:110533354 nonsynonymous SNV 0.998 4 4 hm5C_associated_SNPs_44098 0 0 1 0 1 CDC40 chr6:110533336 3'AG 110533336 Downstream 19bp
chr2 192141645 192141645 1 + C A UCEC 192141649 + 192141629 192141669 41 AAATGGAGGTGAAAACCTCACTTCTGGACAATATGATTGGA AAATGGAGGTGAAAACATCACTTCTGGACAATATGATTGGA < 41bp 1 0.24430667977223 1 0.179781019687653 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MYO1B ENSG00000128641 CDS Human protein_coding chr2:192141649 chr2:192141645 synonymous SNV . 0 17 hm5C_associated_SNPs_44099 0 0 1 0 1 MYO1B chr2:192141613 3'AG 192141613 Downstream 33bp
chr15 40756128 40756128 1 + C G UCEC 40756137 + 40756117 40756157 41 ACAATCCGAGTCCGGGACACCGTCCTTCTCAAATCAGGCCC ACAATCCGAGTGCGGGACACCGTCCTTCTCAAATCAGGCCC < 41bp 1 0.265265059576425 1 0.169497698545456 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40756137 chr15:40756128 synonymous SNV . 0 12 hm5C_associated_SNPs_44101 0 0 1 0 2 BAHD1 chr15:40756060 3'AG 40756060 Downstream 69bp
chr15 40756128 40756128 1 + C G UCEC 40756137 + 40756117 40756157 41 ACAATCCGAGTCCGGGACACCGTCCTTCTCAAATCAGGCCC ACAATCCGAGTGCGGGACACCGTCCTTCTCAAATCAGGCCC < 41bp 1 0.265265059576425 1 0.169497698545456 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40756137 chr15:40756128 synonymous SNV . 0 12 hm5C_associated_SNPs_44101 0 0 1 0 2 BAHD1 chr15:40756219 5'GT 40756219 Upstream 92bp
chr3 47032984 47032984 1 + C T UCEC 47032971 + 47032951 47032991 41 TGCGGGGCTGGAGCCGTGGGCCAGCCCCGGACCCGTGCCTA TGCGGGGCTGGAGCCGTGGGCCAGCCCCGGACCTGTGCCTA < 41bp 1 0.134190930822241 1 0.663937211036682 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032971 chr3:47032984 nonsynonymous SNV 0.060 0 34 hm5C_associated_SNPs_44103 0 0 0 0 1 NBEAL2 chr3:47032896 3'AG 47032896 Downstream 89bp
chr3 47032984 47032984 1 + C T UCEC 47032972 + 47032952 47032992 41 GCGGGGCTGGAGCCGTGGGCCAGCCCCGGACCCGTGCCTAG GCGGGGCTGGAGCCGTGGGCCAGCCCCGGACCTGTGCCTAG < 41bp 1 0.316001830241374 1 0.813081860542297 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032972 chr3:47032984 nonsynonymous SNV 0.060 0 33 hm5C_associated_SNPs_44104 0 0 0 0 1 NBEAL2 chr3:47032896 3'AG 47032896 Downstream 89bp
chr3 47032984 47032984 1 + C T UCEC 47032975 + 47032955 47032995 41 GGGCTGGAGCCGTGGGCCAGCCCCGGACCCGTGCCTAGTGC GGGCTGGAGCCGTGGGCCAGCCCCGGACCTGTGCCTAGTGC < 41bp 1 0.32738542240347 1 0.234577775001526 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032975 chr3:47032984 nonsynonymous SNV 0.060 0 30 hm5C_associated_SNPs_44105 0 0 0 0 1 NBEAL2 chr3:47032896 3'AG 47032896 Downstream 89bp
chr3 47032984 47032984 1 + C T UCEC 47032976 + 47032956 47032996 41 GGCTGGAGCCGTGGGCCAGCCCCGGACCCGTGCCTAGTGCC GGCTGGAGCCGTGGGCCAGCCCCGGACCTGTGCCTAGTGCC < 41bp 1 0.423928875090249 1 0.620219171047211 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032976 chr3:47032984 nonsynonymous SNV 0.060 0 29 hm5C_associated_SNPs_44106 0 0 0 0 1 NBEAL2 chr3:47032896 3'AG 47032896 Downstream 89bp
chr3 47032984 47032984 1 + C T UCEC 47032977 + 47032957 47032997 41 GCTGGAGCCGTGGGCCAGCCCCGGACCCGTGCCTAGTGCCA GCTGGAGCCGTGGGCCAGCCCCGGACCTGTGCCTAGTGCCA < 41bp 1 0.661415100801021 1 0.492107450962067 experiment 0.677169798397959 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032977 chr3:47032984 nonsynonymous SNV 0.060 0 28 hm5C_associated_SNPs_44107 0 0 0 0 1 NBEAL2 chr3:47032896 3'AG 47032896 Downstream 89bp
chr3 47032984 47032984 1 + C T UCEC 47032978 + 47032958 47032998 41 CTGGAGCCGTGGGCCAGCCCCGGACCCGTGCCTAGTGCCAC CTGGAGCCGTGGGCCAGCCCCGGACCTGTGCCTAGTGCCAC < 41bp 1 0.380066950953923 1 0.571761310100555 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032978 chr3:47032984 nonsynonymous SNV 0.060 0 27 hm5C_associated_SNPs_44108 0 0 0 0 1 NBEAL2 chr3:47032896 3'AG 47032896 Downstream 89bp
chr1 109804152 109804152 1 + G A UCEC 109804156 + 109804136 109804176 41 TTTGCCACAAAGGAGCGCGACGGGTTGCTGTTGTACAATGG TTTGCCACAAAGGAGCACGACGGGTTGCTGTTGTACAATGG < 41bp 1 0.299802543190308 1 0.31911426782608 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109804156 chr1:109804152 nonsynonymous SNV 0.735 1 17 hm5C_associated_SNPs_44109 0 0 1 0 2 CELSR2 chr1:109804135 3'AG 109804135 Downstream 18bp
chr1 109804152 109804152 1 + G A UCEC 109804156 + 109804136 109804176 41 TTTGCCACAAAGGAGCGCGACGGGTTGCTGTTGTACAATGG TTTGCCACAAAGGAGCACGACGGGTTGCTGTTGTACAATGG < 41bp 1 0.299802543190308 1 0.31911426782608 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109804156 chr1:109804152 nonsynonymous SNV 0.735 1 17 hm5C_associated_SNPs_44109 0 0 1 0 2 CELSR2 chr1:109804250 5'GT 109804250 Upstream 99bp
chr17 18832164 18832164 1 + C T UCEC 18832171 + 18832151 18832191 41 TTTCTTGCTGCAGCAGAGACCCTGAAGGAAAGAGGTGCATA TTTCTTGCTGCAGTAGAGACCCTGAAGGAAAGAGGTGCATA < 41bp 1 0.334884081333377 1 0.13500252366066 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPSAP2 ENSG00000141127 CDS Human protein_coding chr17:18832171 chr17:18832164 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_44110 0 0 1 0 1 PRPSAP2 chr17:18832124 3'AG 18832124 Downstream 41bp
chr18 60384429 60384429 1 + C T UCEC 60384441 + 60384421 60384461 41 TTGGGGAGCTGTGGAGGGTGCAGGAGGAAGGCATGGACTCG TTGGGGAGTTGTGGAGGGTGCAGGAGGAAGGCATGGACTCG < 41bp 1 0.789929735441772 1 0.758703768253326 experiment 0.420140529116456 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PHLPP1 ENSG00000081913 CDS Human protein_coding chr18:60384441 chr18:60384429 synonymous SNV . 0 9 hm5C_associated_SNPs_44111 0 0 1 0 1 PHLPP1 chr18:60384492 5'GT 60384492 Upstream 64bp
chr2 192265524 192265524 1 + C T UCEC 192265542 + 192265522 192265562 41 TGCTATTGCAGTTATTTGGGCTTACTGGCTTGGATCTAAGG TGTTATTGCAGTTATTTGGGCTTACTGGCTTGGATCTAAGG < 41bp 1 0.0282014368128633 1 0.114156186580658 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MYO1B ENSG00000128641 CDS Human protein_coding chr2:192265542 chr2:192265524 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_44112 0 0 0 0 2 MYO1B chr2:192265475 3'AG 192265475 Downstream 50bp
chr2 192265524 192265524 1 + C T UCEC 192265542 + 192265522 192265562 41 TGCTATTGCAGTTATTTGGGCTTACTGGCTTGGATCTAAGG TGTTATTGCAGTTATTTGGGCTTACTGGCTTGGATCTAAGG < 41bp 1 0.0282014368128633 1 0.114156186580658 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MYO1B ENSG00000128641 CDS Human protein_coding chr2:192265542 chr2:192265524 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_44112 0 0 0 0 2 MYO1B chr2:192265561 5'GT 192265561 Upstream 38bp
chr6 90305643 90305643 1 + G A UCEC 90305648 + 90305628 90305668 41 TTCACAGCATGGCCGGACTCCCCTGCATCTTGCTGCCAATA TTCACAGCATGGCCGAACTCCCCTGCATCTTGCTGCCAATA < 41bp 1 0.0944700250705208 1 0.0810502767562866 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD6 ENSG00000135299 CDS Human protein_coding chr6:90305648 chr6:90305643 synonymous SNV . 0 16 hm5C_associated_SNPs_44113 0 0 0 0 2 ANKRD6 chr6:90305635 3'AG 90305635 Downstream 9bp
chr6 90305643 90305643 1 + G A UCEC 90305648 + 90305628 90305668 41 TTCACAGCATGGCCGGACTCCCCTGCATCTTGCTGCCAATA TTCACAGCATGGCCGAACTCCCCTGCATCTTGCTGCCAATA < 41bp 1 0.0944700250705208 1 0.0810502767562866 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD6 ENSG00000135299 CDS Human protein_coding chr6:90305648 chr6:90305643 synonymous SNV . 0 16 hm5C_associated_SNPs_44113 0 0 0 0 2 ANKRD6 chr6:90305733 5'GT 90305733 Upstream 91bp
chr2 171818208 171818208 1 + A C UCEC 171818210 + 171818190 171818230 41 TTATTGCCACCACAAGTAAACCAGTCCCTCACTTCTGTGCC TTATTGCCACCACAAGTACACCAGTCCCTCACTTCTGTGCC < 41bp 1 0.20975812130745 1 0.0616903007030487 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171818210 chr2:171818208 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_44115 0 0 1 0 2 GORASP2 chr2:171818173 3'AG 171818173 Downstream 36bp
chr2 171818208 171818208 1 + A C UCEC 171818210 + 171818190 171818230 41 TTATTGCCACCACAAGTAAACCAGTCCCTCACTTCTGTGCC TTATTGCCACCACAAGTACACCAGTCCCTCACTTCTGTGCC < 41bp 1 0.20975812130745 1 0.0616903007030487 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171818210 chr2:171818208 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_44115 0 0 1 0 2 GORASP2 chr2:171818259 5'GT 171818259 Upstream 52bp
chr12 95879657 95879657 1 + A G UCEC 95879655 + 95879635 95879675 41 GCTTTATTTGTATCTCACAGCAAAAGTTCAAACAGACCCTC GCTTTATTTGTATCTCACAGCAGAAGTTCAAACAGACCCTC < 41bp 1 0.688721574841233 1 0.51702892780304 experiment 0.622556850317534 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95879655 chr12:95879657 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_44116 0 0 1 2 1 METAP2 chr12:95879655 3'AG 95879655 Downstream 3bp
chr1 24020374 24020374 1 + G A UCEC 24020369 + 24020349 24020389 41 CCACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGG CCACTGCACAGTTCGAGGGGCCAAGACAGAAGAAATCTTGG < 41bp 1 0.0921933557782458 1 0.167239189147949 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24020369 chr1:24020374 nonsynonymous SNV 0.999 2 26 hm5C_associated_SNPs_44117 0 0 1 0 2 RPL11 chr1:24020297 3'AG 24020297 Downstream 78bp
chr1 24020374 24020374 1 + G A UCEC 24020369 + 24020349 24020389 41 CCACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGG CCACTGCACAGTTCGAGGGGCCAAGACAGAAGAAATCTTGG < 41bp 1 0.0921933557782458 1 0.167239189147949 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24020369 chr1:24020374 nonsynonymous SNV 0.999 2 26 hm5C_associated_SNPs_44117 0 0 1 0 2 RPL11 chr1:24020403 5'GT 24020403 Upstream 30bp
chr1 24020374 24020374 1 + G A UCEC 24020370 + 24020350 24020390 41 CACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGGA CACTGCACAGTTCGAGGGGCCAAGACAGAAGAAATCTTGGA < 41bp 1 0.712212621701679 1 0.215947598218918 experiment 0.575574756596642 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24020370 chr1:24020374 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_44118 0 0 1 0 2 RPL11 chr1:24020297 3'AG 24020297 Downstream 78bp
chr1 24020374 24020374 1 + G A UCEC 24020370 + 24020350 24020390 41 CACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGGA CACTGCACAGTTCGAGGGGCCAAGACAGAAGAAATCTTGGA < 41bp 1 0.712212621701679 1 0.215947598218918 experiment 0.575574756596642 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24020370 chr1:24020374 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_44118 0 0 1 0 2 RPL11 chr1:24020403 5'GT 24020403 Upstream 30bp
chr17 18832162 18832162 1 + A G UCEC 18832171 + 18832151 18832191 41 TTTCTTGCTGCAGCAGAGACCCTGAAGGAAAGAGGTGCATA TTTCTTGCTGCGGCAGAGACCCTGAAGGAAAGAGGTGCATA < 41bp 1 0.414189159572279 1 0.186741501092911 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPSAP2 ENSG00000141127 CDS Human protein_coding chr17:18832171 chr17:18832162 synonymous SNV . 0 12 hm5C_associated_SNPs_44119 0 0 1 0 1 PRPSAP2 chr17:18832124 3'AG 18832124 Downstream 39bp
chrX 103434375 103434375 1 + C T UCEC 103434382 + 103434362 103434402 41 GGAAGGAGAGGCTCAGTGGGCTCTTCCTTAACGAAGAGGTG GGAAGGAGAGGCTTAGTGGGCTCTTCCTTAACGAAGAGGTG < 41bp 1 0.260786989637397 1 0.084915429353714 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAM199X ENSG00000123575 CDS Human protein_coding chrX:103434382 chrX:103434375 synonymous SNV . 0 14 hm5C_associated_SNPs_44120 0 0 1 0 1 FAM199X chrX:103434289 3'AG 103434289 Downstream 87bp
chr2 223782820 223782820 1 + A G UCEC 223782831 + 223782811 223782851 41 TTAAATGAAACAGAGGTGACCAACATCATTACTAGTAAAGA TTAAATGAAGCAGAGGTGACCAACATCATTACTAGTAAAGA < 41bp 1 0.544716357704648 1 0.349731117486954 experiment 0.910567284590704 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACSL3 ENSG00000123983 CDS Human protein_coding chr2:223782831 chr2:223782820 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_44121 0 0 1 0 2 ACSL3 chr2:223782764 3'AG 223782764 Downstream 57bp
chr2 223782820 223782820 1 + A G UCEC 223782831 + 223782811 223782851 41 TTAAATGAAACAGAGGTGACCAACATCATTACTAGTAAAGA TTAAATGAAGCAGAGGTGACCAACATCATTACTAGTAAAGA < 41bp 1 0.544716357704648 1 0.349731117486954 experiment 0.910567284590704 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACSL3 ENSG00000123983 CDS Human protein_coding chr2:223782831 chr2:223782820 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_44121 0 0 1 0 2 ACSL3 chr2:223782873 5'GT 223782873 Upstream 54bp
chr2 109367756 109367756 1 + T G UCEC 109367752 + 109367732 109367772 41 CACATAATGGTAGTCTTCAGCACCTTACTTGGCTTGGCTTA CACATAATGGTAGTCTTCAGCACCGTACTTGGCTTGGCTTA < 41bp 1 0.504306419191373 1 0.479071497917175 experiment 0.991387161617255 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109367752 chr2:109367756 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_44122 0 0 0 0 1 RANBP2 chr2:109367720 3'AG 109367720 Downstream 37bp
chr11 67079116 67079116 1 + C A UCEC 67079113 + 67079093 67079133 41 AGCCTCTGCAGCCCTTCCCACAGCTTGCAAGGACCAAGGGA AGCCTCTGCAGCCCTTCCCACAGATTGCAAGGACCAAGGGA < 41bp 1 0.260212393092908 1 0.753471195697784 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67079113 chr11:67079116 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_44123 0 0 0 0 1 SSH3 chr11:67079062 3'AG 67079062 Downstream 55bp
chr9 96398789 96398789 1 + G A UCEC 96398804 + 96398784 96398824 41 GCTGCGGAGCCGGACCTTTCCCAGGTGGGCTGGCCTTCCTG GCTGCAGAGCCGGACCTTTCCCAGGTGGGCTGGCCTTCCTG < 41bp 1 0.779367287361645 1 0.670729994773865 experiment 0.44126542527671 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96398804 chr9:96398789 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_44125 0 0 1 0 2 PHF2 chr9:96398693 3'AG 96398693 Downstream 97bp
chr9 96398789 96398789 1 + G A UCEC 96398804 + 96398784 96398824 41 GCTGCGGAGCCGGACCTTTCCCAGGTGGGCTGGCCTTCCTG GCTGCAGAGCCGGACCTTTCCCAGGTGGGCTGGCCTTCCTG < 41bp 1 0.779367287361645 1 0.670729994773865 experiment 0.44126542527671 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96398804 chr9:96398789 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_44125 0 0 1 0 2 PHF2 chr9:96398807 5'GT 96398807 Upstream 19bp
chr1 44684007 44684007 1 + G A UCEC 44684019 + 44683999 44684039 41 TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGATGAT TGTACTCGAAGCAGGAGTACCAGCTTTATCTCCACGATGAT < 41bp 1 0.477515328580362 1 0.280862033367157 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44684019 chr1:44684007 nonsynonymous SNV 0.998 1 9 hm5C_associated_SNPs_44128 0 0 1 0 1 DMAP1 chr1:44683983 3'AG 44683983 Downstream 25bp
chr1 153750707 153750707 1 + G A UCEC 153750688 + 153750668 153750708 41 TGGCAGTGGGCAGCGGGCTGCGCCCAGATACCTGGGAGCGT TGGCAGTGGGCAGCGGGCTGCGCCCAGATACCTGGGAGCAT < 41bp 1 0.43904293059492 1 0.173095345497131 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750688 chr1:153750707 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_44131 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 71bp
chr1 201828077 201828077 1 + C T UCEC 201828085 + 201828065 201828105 41 CATTTTGACATGCATGGGTTCCTGACCAATGTCATCCTTGC CATTTTGACATGTATGGGTTCCTGACCAATGTCATCCTTGC < 41bp 1 0.135166809667936 1 0.0448461174964905 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IPO9 ENSG00000198700 CDS Human protein_coding chr1:201828085 chr1:201828077 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_44132 0 0 1 0 2 IPO9 chr1:201827983 3'AG 201827983 Downstream 95bp
chr1 201828077 201828077 1 + C T UCEC 201828085 + 201828065 201828105 41 CATTTTGACATGCATGGGTTCCTGACCAATGTCATCCTTGC CATTTTGACATGTATGGGTTCCTGACCAATGTCATCCTTGC < 41bp 1 0.135166809667936 1 0.0448461174964905 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IPO9 ENSG00000198700 CDS Human protein_coding chr1:201828085 chr1:201828077 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_44132 0 0 1 0 2 IPO9 chr1:201828122 5'GT 201828122 Upstream 46bp
chr2 99156101 99156101 1 + C T UCEC 99156084 + 99156064 99156104 41 GATGGCAGAGAGCGTGCTCTCCCTGCACGTGCCCCGGCAGT GATGGCAGAGAGCGTGCTCTCCCTGCACGTGCCCCGGTAGT < 41bp 1 0.320154356599141 1 0.680331885814667 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99156084 chr2:99156101 stopgain 1.000 1 38 hm5C_associated_SNPs_44133 0 0 1 0 1 INPP4A chr2:99156138 5'GT 99156138 Upstream 38bp
chr17 49239101 49239101 1 + T C UCEC 49239099 + 49239079 49239119 41 CTCCACCCAGGAACATTATACATGGCAGTGATTCTGTGGAG CTCCACCCAGGAACATTATACACGGCAGTGATTCTGTGGAG < 41bp 1 0.708776803381951 1 0.126713573932648 experiment 0.582446393236098 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NME1 ENSG00000239672 CDS Human protein_coding chr17:49239099 chr17:49239101 synonymous SNV . 0 23 hm5C_associated_SNPs_44135 0 0 1 0 1 NME1 chr17:49239089 3'AG 49239089 Downstream 13bp
chr17 49239101 49239101 1 + T C UCEC 49239112 + 49239092 49239132 41 CATTATACATGGCAGTGATTCTGTGGAGAGTGCAGAGAAGG CATTATACACGGCAGTGATTCTGTGGAGAGTGCAGAGAAGG < 41bp 1 0.437456297905639 1 0.45100063085556 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NME1 ENSG00000239672 CDS Human protein_coding chr17:49239112 chr17:49239101 synonymous SNV . 0 10 hm5C_associated_SNPs_44136 0 0 1 0 1 NME1 chr17:49239089 3'AG 49239089 Downstream 13bp
chr1 32647152 32647152 1 + A C UCEC 32647149 + 32647129 32647169 41 AGACCGAGACCATCGAAGGCCACAGGAGAAGAAAAAAGCCA AGACCGAGACCATCGAAGGCCACCGGAGAAGAAAAAAGCCA < 41bp 1 0.493652530655883 1 0.4496990442276 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TXLNA ENSG00000084652 CDS Human protein_coding chr1:32647149 chr1:32647152 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_44137 0 0 1 0 1 TXLNA chr1:32647178 5'GT 32647178 Upstream 27bp
chrX 150156295 150156295 1 + G C UCEC 150156311 + 150156291 150156331 41 AAAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGG AAAGCGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGG < 41bp 1 0.450650123550599 1 0.186369061470032 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156311 chrX:150156295 nonsynonymous SNV 0.961 1 5 hm5C_associated_SNPs_44143 0 0 1 0 1 HMGB3 chrX:150156250 3'AG 150156250 Downstream 46bp
chrX 150156295 150156295 1 + G C UCEC 150156312 + 150156292 150156332 41 AAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGA AAGCGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGA < 41bp 1 0.669190708124834 1 0.536859273910522 experiment 0.661618583750332 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156312 chrX:150156295 nonsynonymous SNV 0.961 1 4 hm5C_associated_SNPs_44144 0 0 1 0 1 HMGB3 chrX:150156250 3'AG 150156250 Downstream 46bp
chrX 150156295 150156295 1 + G C UCEC 150156313 + 150156293 150156333 41 AGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGAA AGCGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGAA < 41bp 1 0.675715835805387 1 0.74322247505188 experiment 0.648568328389226 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156313 chrX:150156295 nonsynonymous SNV 0.961 1 3 hm5C_associated_SNPs_44145 0 0 1 0 1 HMGB3 chrX:150156250 3'AG 150156250 Downstream 46bp
chr14 73550246 73550246 1 + C T UCEC 73550235 + 73550215 73550255 41 TTTTGAGCTGGAAGAGAGTACAAGGTGCTTCCGGAAAGCTT TTTTGAGCTGGAAGAGAGTACAAGGTGCTTCTGGAAAGCTT < 41bp 1 0.58986860803369 1 0.538762092590332 experiment 0.820262783932621 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73550235 chr14:73550246 synonymous SNV . 0 32 hm5C_associated_SNPs_44146 0 0 1 0 2 RBM25 chr14:73550202 3'AG 73550202 Downstream 45bp
chr14 73550246 73550246 1 + C T UCEC 73550235 + 73550215 73550255 41 TTTTGAGCTGGAAGAGAGTACAAGGTGCTTCCGGAAAGCTT TTTTGAGCTGGAAGAGAGTACAAGGTGCTTCTGGAAAGCTT < 41bp 1 0.58986860803369 1 0.538762092590332 experiment 0.820262783932621 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73550235 chr14:73550246 synonymous SNV . 0 32 hm5C_associated_SNPs_44146 0 0 1 0 2 RBM25 chr14:73550259 5'GT 73550259 Upstream 14bp
chr2 157407222 157407222 1 + G A UCEC 157407233 + 157407213 157407253 41 GCCAGCCAAGTGCTGGTGTCCATATTGTGATGCCTGGTTAT GCCAGCCAAATGCTGGTGTCCATATTGTGATGCCTGGTTAT < 41bp 1 0.136239676333214 1 0.0697313249111176 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407233 chr2:157407222 nonsynonymous SNV 0.486 3 10 hm5C_associated_SNPs_44147 0 0 1 1 1 GPD2 chr2:157407258 5'GT 157407258 Upstream 37bp
chr1 32502590 32502590 1 + G A UCEC 32502589 + 32502569 32502609 41 TACCTGAACCCTCTCGTGGACGTGGGGTGCCAGTGAGAGGC TACCTGAACCCTCTCGTGGACATGGGGTGCCAGTGAGAGGC < 41bp 1 0.741570632930338 1 0.388568639755249 experiment 0.516858734139324 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502589 chr1:32502590 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_44149 0 0 1 0 2 KHDRBS1 chr1:32502511 3'AG 32502511 Downstream 80bp
chr1 32502590 32502590 1 + G A UCEC 32502589 + 32502569 32502609 41 TACCTGAACCCTCTCGTGGACGTGGGGTGCCAGTGAGAGGC TACCTGAACCCTCTCGTGGACATGGGGTGCCAGTGAGAGGC < 41bp 1 0.741570632930338 1 0.388568639755249 experiment 0.516858734139324 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502589 chr1:32502590 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_44149 0 0 1 0 2 KHDRBS1 chr1:32502644 5'GT 32502644 Upstream 55bp
chr1 32502590 32502590 1 + G A UCEC 32502598 + 32502578 32502618 41 CCTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCT CCTCTCGTGGACATGGGGTGCCAGTGAGAGGCCGGGGAGCT < 41bp 1 0.494058391323095 1 0.47748139500618 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502598 chr1:32502590 nonsynonymous SNV 0.999 2 13 hm5C_associated_SNPs_44150 0 0 1 0 2 KHDRBS1 chr1:32502511 3'AG 32502511 Downstream 80bp
chr1 32502590 32502590 1 + G A UCEC 32502598 + 32502578 32502618 41 CCTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCT CCTCTCGTGGACATGGGGTGCCAGTGAGAGGCCGGGGAGCT < 41bp 1 0.494058391323095 1 0.47748139500618 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502598 chr1:32502590 nonsynonymous SNV 0.999 2 13 hm5C_associated_SNPs_44150 0 0 1 0 2 KHDRBS1 chr1:32502644 5'GT 32502644 Upstream 55bp
chr1 32502590 32502590 1 + G A UCEC 32502599 + 32502579 32502619 41 CTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCTG CTCTCGTGGACATGGGGTGCCAGTGAGAGGCCGGGGAGCTG < 41bp 1 0.728564420444825 1 0.254807651042938 experiment 0.54287115911035 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502599 chr1:32502590 nonsynonymous SNV 0.999 2 12 hm5C_associated_SNPs_44151 0 0 1 0 2 KHDRBS1 chr1:32502511 3'AG 32502511 Downstream 80bp
chr1 32502590 32502590 1 + G A UCEC 32502599 + 32502579 32502619 41 CTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCTG CTCTCGTGGACATGGGGTGCCAGTGAGAGGCCGGGGAGCTG < 41bp 1 0.728564420444825 1 0.254807651042938 experiment 0.54287115911035 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502599 chr1:32502590 nonsynonymous SNV 0.999 2 12 hm5C_associated_SNPs_44151 0 0 1 0 2 KHDRBS1 chr1:32502644 5'GT 32502644 Upstream 55bp
chr12 69965990 69965990 1 + T C UCEC 69966003 + 69965983 69966023 41 ACATCCTTCTGTGGGAAGTGCTCGCCTGCCTTCAGTAGGGG ACATCCTCCTGTGGGAAGTGCTCGCCTGCCTTCAGTAGGGG < 41bp 1 0.428447144871681 1 0.223352640867233 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FRS2 ENSG00000166225 CDS Human protein_coding chr12:69966003 chr12:69965990 nonsynonymous SNV 0.995 4 8 hm5C_associated_SNPs_44153 0 0 1 0 2 FRS2 chr12:69965898 3'AG 69965898 Downstream 93bp
chr12 69965990 69965990 1 + T C UCEC 69966003 + 69965983 69966023 41 ACATCCTTCTGTGGGAAGTGCTCGCCTGCCTTCAGTAGGGG ACATCCTCCTGTGGGAAGTGCTCGCCTGCCTTCAGTAGGGG < 41bp 1 0.428447144871681 1 0.223352640867233 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FRS2 ENSG00000166225 CDS Human protein_coding chr12:69966003 chr12:69965990 nonsynonymous SNV 0.995 4 8 hm5C_associated_SNPs_44153 0 0 1 0 2 FRS2 chr12:69966061 5'GT 69966061 Upstream 72bp
chr11 14865497 14865497 1 + C T UCEC 14865490 + 14865470 14865510 41 TCCTGCATTAGAATTGATGGCTCTATACGTGGCAGCTGCCA TCCTGCATTAGAATTGATGGCTCTATATGTGGCAGCTGCCA < 41bp 1 0.410920183837871 1 0.863337576389313 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE3B ENSG00000152270 CDS Human protein_coding chr11:14865490 chr11:14865497 synonymous SNV . 0 28 hm5C_associated_SNPs_44154 0 0 1 0 1 PDE3B chr11:14865572 5'GT 14865572 Upstream 76bp
chr7 94917899 94917899 1 + G A UCEC 94917917 + 94917897 94917937 41 CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA CCATTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA < 41bp 1 0.563600869209373 1 0.173299938440323 experiment 0.872798261581253 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917917 chr7:94917899 nonsynonymous SNV 0.136 1 3 hm5C_associated_SNPs_44155 0 0 0 0 1 PPP1R9A chr7:94917848 3'AG 94917848 Downstream 52bp
chr5 154174839 154174839 1 + G T UCEC 154174837 + 154174817 154174857 41 ACCCTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCAC ACCCTTATTGCTTCCTTCCACCTAGTGCAGGCCCTTACCAC < 41bp 1 0.108052418662394 1 0.0602322816848755 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154174837 chr5:154174839 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_44156 0 0 1 0 1 LARP1 chr5:154174879 5'GT 154174879 Upstream 41bp
chr5 154174839 154174839 1 + G T UCEC 154174838 + 154174818 154174858 41 CCCTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCACT CCCTTATTGCTTCCTTCCACCTAGTGCAGGCCCTTACCACT < 41bp 1 0.337744708025983 1 0.668883919715881 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154174838 chr5:154174839 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_44157 0 0 1 0 1 LARP1 chr5:154174879 5'GT 154174879 Upstream 41bp
chr1 161751789 161751789 1 + G T UCEC 161751776 + 161751756 161751796 41 GACATTTGGGACATCAACAACCAAATCTGTACAGGTAATTA GACATTTGGGACATCAACAACCAAATCTGTACATGTAATTA < 41bp 1 0.171904500255024 1 0.104089349508286 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161751776 chr1:161751789 nonsynonymous SNV 0.996 0 34 hm5C_associated_SNPs_44158 0 0 1 0 2 ATF6 chr1:161751702 3'AG 161751702 Downstream 88bp
chr1 161751789 161751789 1 + G T UCEC 161751776 + 161751756 161751796 41 GACATTTGGGACATCAACAACCAAATCTGTACAGGTAATTA GACATTTGGGACATCAACAACCAAATCTGTACATGTAATTA < 41bp 1 0.171904500255024 1 0.104089349508286 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161751776 chr1:161751789 nonsynonymous SNV 0.996 0 34 hm5C_associated_SNPs_44158 0 0 1 0 2 ATF6 chr1:161751789 5'GT 161751789 Upstream 1bp
chr9 80943003 80943003 1 + T C UCEC 80942983 + 80942963 80943003 41 TCAGTTGTCCAGTGGAGCCCCAAAATAGAAGCAAGATGAAT TCAGTTGTCCAGTGGAGCCCCAAAATAGAAGCAAGATGAAC < 41bp 1 0.462292650838077 1 0.423964202404022 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80942983 chr9:80943003 synonymous SNV . 0 41 hm5C_associated_SNPs_44161 0 0 1 0 1 PSAT1 chr9:80942967 3'AG 80942967 Downstream 37bp
chr9 134382793 134382793 1 + C T UCEC 134382812 + 134382792 134382832 41 GCTGCCAGCACTCGCGGGGGCCTTGTCGGTCCCCATGGCCT GTTGCCAGCACTCGCGGGGGCCTTGTCGGTCCCCATGGCCT < 41bp 1 0.0537112585174522 1 0.0347888171672821 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control POMT1 ENSG00000130714 CDS Human protein_coding chr9:134382812 chr9:134382793 synonymous SNV . 0 2 hm5C_associated_SNPs_44162 0 0 1 0 1 POMT1 chr9:134382755 3'AG 134382755 Downstream 39bp
chr21 30701832 30701832 1 + C T UCEC 30701844 + 30701824 30701864 41 ATGCACAACGGATAATTTCACTGTCTCGAAATGATTTTCAG ATGCACAATGGATAATTTCACTGTCTCGAAATGATTTTCAG < 41bp 1 0.184262556606321 1 0.131155163049698 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BACH1 ENSG00000156273 CDS Human protein_coding chr21:30701844 chr21:30701832 nonsynonymous SNV 0.998 2 9 hm5C_associated_SNPs_44164 0 0 1 0 1 BACH1 chr21:30701808 3'AG 30701808 Downstream 25bp
chrX 24545705 24545705 1 + G A UCEC 24545707 + 24545687 24545727 41 TTAGAACTCAATGAGAGCGACAGTTGAACTCTATGAAGACA TTAGAACTCAATGAGAGCAACAGTTGAACTCTATGAAGACA < 41bp 1 0.0706186930007436 1 0.384961664676666 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK3 ENSG00000067992 CDS Human protein_coding chrX:24545707 chrX:24545705 synonymous SNV . 0 19 hm5C_associated_SNPs_44165 0 0 1 0 2 PDK3 chrX:24545691 3'AG 24545691 Downstream 15bp
chrX 24545705 24545705 1 + G A UCEC 24545707 + 24545687 24545727 41 TTAGAACTCAATGAGAGCGACAGTTGAACTCTATGAAGACA TTAGAACTCAATGAGAGCAACAGTTGAACTCTATGAAGACA < 41bp 1 0.0706186930007436 1 0.384961664676666 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK3 ENSG00000067992 CDS Human protein_coding chrX:24545707 chrX:24545705 synonymous SNV . 0 19 hm5C_associated_SNPs_44165 0 0 1 0 2 PDK3 chrX:24545792 5'GT 24545792 Upstream 88bp
chr3 113786895 113786895 1 + T C UCEC 113786877 + 113786857 113786897 41 TGCTCCCTGCACGATCCAGTCAGCCCCTGCCCGGCTGGTTA TGCTCCCTGCACGATCCAGTCAGCCCCTGCCCGGCTGGCTA < 41bp 1 0.527846892370175 1 0.607407033443451 experiment 0.944306215259651 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QTRT2 ENSG00000151576 CDS Human protein_coding chr3:113786877 chr3:113786895 synonymous SNV . 0 39 hm5C_associated_SNPs_44166 0 0 1 0 2 QTRT2 chr3:113786834 3'AG 113786834 Downstream 62bp
chr3 113786895 113786895 1 + T C UCEC 113786877 + 113786857 113786897 41 TGCTCCCTGCACGATCCAGTCAGCCCCTGCCCGGCTGGTTA TGCTCCCTGCACGATCCAGTCAGCCCCTGCCCGGCTGGCTA < 41bp 1 0.527846892370175 1 0.607407033443451 experiment 0.944306215259651 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QTRT2 ENSG00000151576 CDS Human protein_coding chr3:113786877 chr3:113786895 synonymous SNV . 0 39 hm5C_associated_SNPs_44166 0 0 1 0 2 QTRT2 chr3:113786910 5'GT 113786910 Upstream 16bp
chr20 35176484 35176484 1 + G A UCEC 35176493 + 35176473 35176513 41 AGCGAGGCCCCGGGGCCCATCAACTTCACCATGTTCCTCAC AGCGAGGCCCCAGGGCCCATCAACTTCACCATGTTCCTCAC < 41bp 1 0.479438881161806 1 0.777886748313904 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MYL9 ENSG00000101335 CDS Human protein_coding chr20:35176493 chr20:35176484 synonymous SNV . 0 12 hm5C_associated_SNPs_44168 0 0 0 0 1 MYL9 chr20:35176435 3'AG 35176435 Downstream 50bp
chr19 11141524 11141524 1 + G A UCEC 11141506 + 11141486 11141526 41 AGCACCCGGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGGC AGCACCCGGGCTGGGGGGCTCGGCCTGAACCTCCAGTCAGC < 41bp 1 0.442138900497515 1 0.695037364959717 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141506 chr19:11141524 synonymous SNV . 0 39 hm5C_associated_SNPs_44169 0 0 1 0 1 SMARCA4 chr19:11141569 5'GT 11141569 Upstream 46bp
chr19 40718779 40718779 1 + C T UCEC 40718786 + 40718766 40718806 41 GGACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTG GGACATGGAGCCGTGGTGGGCCCCCAAAGAAGGAAGAACTG < 41bp 1 0.0629099403730065 1 0.141393512487411 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718786 chr19:40718779 synonymous SNV . 0 14 hm5C_associated_SNPs_44170 0 0 1 0 1 MAP3K10 chr19:40718712 3'AG 40718712 Downstream 68bp
chr19 40718779 40718779 1 + C T UCEC 40718787 + 40718767 40718807 41 GACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGG GACATGGAGCCGTGGTGGGCCCCCAAAGAAGGAAGAACTGG < 41bp 1 0.203706256821908 1 0.382641524076462 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718787 chr19:40718779 synonymous SNV . 0 13 hm5C_associated_SNPs_44171 0 0 1 0 1 MAP3K10 chr19:40718712 3'AG 40718712 Downstream 68bp
chr19 40718779 40718779 1 + C T UCEC 40718788 + 40718768 40718808 41 ACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGT ACATGGAGCCGTGGTGGGCCCCCAAAGAAGGAAGAACTGGT < 41bp 1 0.188178941958765 1 0.558956146240234 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718788 chr19:40718779 synonymous SNV . 0 12 hm5C_associated_SNPs_44172 0 0 1 0 1 MAP3K10 chr19:40718712 3'AG 40718712 Downstream 68bp
chr19 40718779 40718779 1 + C T UCEC 40718789 + 40718769 40718809 41 CATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGTC CATGGAGCCGTGGTGGGCCCCCAAAGAAGGAAGAACTGGTC < 41bp 1 0.198471904576981 1 0.698400437831879 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718789 chr19:40718779 synonymous SNV . 0 11 hm5C_associated_SNPs_44173 0 0 1 0 1 MAP3K10 chr19:40718712 3'AG 40718712 Downstream 68bp
chr19 40718779 40718779 1 + C T UCEC 40718790 + 40718770 40718810 41 ATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGTCG ATGGAGCCGTGGTGGGCCCCCAAAGAAGGAAGAACTGGTCG < 41bp 1 0.341266576050732 1 0.774573743343353 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718790 chr19:40718779 synonymous SNV . 0 10 hm5C_associated_SNPs_44174 0 0 1 0 1 MAP3K10 chr19:40718712 3'AG 40718712 Downstream 68bp
chr6 133137664 133137664 1 + G A UCEC 133137682 + 133137662 133137702 41 TGGAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAG TGAAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAG < 41bp 1 0.788058361990758 1 0.072683721780777 experiment 0.423883276018485 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS12 ENSG00000112306 CDS Human protein_coding chr6:133137682 chr6:133137664 nonsynonymous SNV 0.999 1 3 hm5C_associated_SNPs_44175 0 0 1 1 2 RPS12 chr6:133137600 3'AG 133137600 Downstream 65bp
chr6 133137664 133137664 1 + G A UCEC 133137682 + 133137662 133137702 41 TGGAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAG TGAAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAG < 41bp 1 0.788058361990758 1 0.072683721780777 experiment 0.423883276018485 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS12 ENSG00000112306 CDS Human protein_coding chr6:133137682 chr6:133137664 nonsynonymous SNV 0.999 1 3 hm5C_associated_SNPs_44175 0 0 1 1 2 RPS12 chr6:133137702 5'GT 133137702 Upstream 39bp
chr6 133137664 133137664 1 + G A UCEC 133137684 + 133137664 133137704 41 GAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAGGT AAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAGGT < 41bp 1 0.470268680126166 1 0.396497160196304 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS12 ENSG00000112306 CDS Human protein_coding chr6:133137684 chr6:133137664 nonsynonymous SNV 0.999 1 1 hm5C_associated_SNPs_44176 0 0 1 1 2 RPS12 chr6:133137600 3'AG 133137600 Downstream 65bp
chr6 133137664 133137664 1 + G A UCEC 133137684 + 133137664 133137704 41 GAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAGGT AAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAGGT < 41bp 1 0.470268680126166 1 0.396497160196304 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS12 ENSG00000112306 CDS Human protein_coding chr6:133137684 chr6:133137664 nonsynonymous SNV 0.999 1 1 hm5C_associated_SNPs_44176 0 0 1 1 2 RPS12 chr6:133137702 5'GT 133137702 Upstream 39bp
chrX 153035855 153035855 1 + T A UCEC 153035874 + 153035854 153035894 41 CTCCTTTTATGACTGCAGTGCCGTCCAGGCCTTGGAGGCGG CACCTTTTATGACTGCAGTGCCGTCCAGGCCTTGGAGGCGG < 41bp 1 0.0285061897466913 1 0.0774831175804138 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153035874 chrX:153035855 nonsynonymous SNV 0.997 1 2 hm5C_associated_SNPs_44177 0 0 0 0 2 PLXNB3 chrX:153035793 3'AG 153035793 Downstream 63bp
chrX 153035855 153035855 1 + T A UCEC 153035874 + 153035854 153035894 41 CTCCTTTTATGACTGCAGTGCCGTCCAGGCCTTGGAGGCGG CACCTTTTATGACTGCAGTGCCGTCCAGGCCTTGGAGGCGG < 41bp 1 0.0285061897466913 1 0.0774831175804138 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153035874 chrX:153035855 nonsynonymous SNV 0.997 1 2 hm5C_associated_SNPs_44177 0 0 0 0 2 PLXNB3 chrX:153035901 5'GT 153035901 Upstream 47bp
chr19 46509884 46509884 1 + T C UCEC 46509891 + 46509871 46509911 41 CGGAACCGCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCC CGGAACCGCAAGACGGGGGGCCGCCCAGGCTCCTTGGCCCC < 41bp 1 0.107275902153077 1 0.111608356237411 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509891 chr19:46509884 nonsynonymous SNV 0.998 1 14 hm5C_associated_SNPs_44178 0 0 1 0 1 CCDC61 chr19:46509974 5'GT 46509974 Upstream 91bp
chr19 46509884 46509884 1 + T C UCEC 46509892 + 46509872 46509912 41 GGAACCGCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCCC GGAACCGCAAGACGGGGGGCCGCCCAGGCTCCTTGGCCCCC < 41bp 1 0.271064158183612 1 0.0901864767074585 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509892 chr19:46509884 nonsynonymous SNV 0.998 1 13 hm5C_associated_SNPs_44179 0 0 1 0 1 CCDC61 chr19:46509974 5'GT 46509974 Upstream 91bp
chr16 675478 675478 1 + G T UCEC 675485 + 675465 675505 41 TGGTCCTTTGACGGCATCGACCGCTGGATCAAGGAGATCGA TGGTCCTTTGACGTCATCGACCGCTGGATCAAGGAGATCGA < 41bp 1 0.164783960950659 1 0.080287367105484 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675485 chr16:675478 nonsynonymous SNV 0.992 4 14 hm5C_associated_SNPs_44180 0 0 1 0 2 RAB40C chr16:675432 3'AG 675432 Downstream 47bp
chr16 675478 675478 1 + G T UCEC 675485 + 675465 675505 41 TGGTCCTTTGACGGCATCGACCGCTGGATCAAGGAGATCGA TGGTCCTTTGACGTCATCGACCGCTGGATCAAGGAGATCGA < 41bp 1 0.164783960950659 1 0.080287367105484 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675485 chr16:675478 nonsynonymous SNV 0.992 4 14 hm5C_associated_SNPs_44180 0 0 1 0 2 RAB40C chr16:675509 5'GT 675509 Upstream 32bp
chr3 126741023 126741023 1 + G T UCEC 126741032 + 126741012 126741052 41 CTGGAGGCACAGCGCAGCTTCTCCATGCGCGACCGCGGGAA CTGGAGGCACATCGCAGCTTCTCCATGCGCGACCGCGGGAA < 41bp 1 0.594309488966165 1 0.967249751091003 experiment 0.811381022067671 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126741032 chr3:126741023 nonsynonymous SNV 0.920 4 12 hm5C_associated_SNPs_44181 0 0 1 0 1 PLXNA1 chr3:126740928 3'AG 126740928 Downstream 96bp
chrX 105891600 105891600 1 + G A UCEC 105891593 + 105891573 105891613 41 ACAAACAAAGGGAATTAAACCGGGCATGCCAAGCATCTTCA ACAAACAAAGGGAATTAAACCGGGCATACCAAGCATCTTCA < 41bp 1 0.689037681505715 1 0.717086255550385 experiment 0.62192463698857 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105891593 chrX:105891600 nonsynonymous SNV 0.000 0 28 hm5C_associated_SNPs_44182 0 0 1 0 1 CXorf57 chrX:105891616 5'GT 105891616 Upstream 17bp
chr3 40553909 40553909 1 + G A UCEC 40553898 + 40553878 40553918 41 TTTCTCCCTGGGCAGCATTCCCATTCACCACGCCTGTTCTG TTTCTCCCTGGGCAGCATTCCCATTCACCACACCTGTTCTG < 41bp 1 0.108070035153864 1 0.168994814157486 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF620 ENSG00000177842 CDS Human protein_coding chr3:40553898 chr3:40553909 synonymous SNV . 0 32 hm5C_associated_SNPs_44184 0 0 0 0 2 ZNF620 chr3:40553893 3'AG 40553893 Downstream 17bp
chr3 40553909 40553909 1 + G A UCEC 40553898 + 40553878 40553918 41 TTTCTCCCTGGGCAGCATTCCCATTCACCACGCCTGTTCTG TTTCTCCCTGGGCAGCATTCCCATTCACCACACCTGTTCTG < 41bp 1 0.108070035153864 1 0.168994814157486 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF620 ENSG00000177842 CDS Human protein_coding chr3:40553898 chr3:40553909 synonymous SNV . 0 32 hm5C_associated_SNPs_44184 0 0 0 0 2 ZNF620 chr3:40554006 5'GT 40554006 Upstream 98bp
chr2 189458726 189458726 1 + C T UCEC 189458714 + 189458694 189458734 41 GAAGGCACAGTATTTTGTCTCGACCCGTTAGACAGTAGGTG GAAGGCACAGTATTTTGTCTCGACCCGTTAGATAGTAGGTG < 41bp 1 0.309531369723455 1 0.0986729264259338 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GULP1 ENSG00000144366 CDS Human protein_coding chr2:189458714 chr2:189458726 synonymous SNV . 0 33 hm5C_associated_SNPs_44186 0 0 1 0 1 GULP1 chr2:189458667 3'AG 189458667 Downstream 60bp
chr22 44330494 44330494 1 + A T UCEC 44330489 + 44330469 44330509 41 GCTTGCTTTGCTCACAGGTGCTGGGAGAGATATGCCTTCGA GCTTGCTTTGCTCACAGGTGCTGGGTGAGATATGCCTTCGA < 41bp 1 0.724358532041461 1 0.734167516231537 experiment 0.551282935917078 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44330489 chr22:44330494 synonymous SNV . 0 26 hm5C_associated_SNPs_44187 0 0 1 0 1 PNPLA3 chr22:44330486 3'AG 44330486 Downstream 9bp
chr6 36569550 36569550 1 + G A UCEC 36569553 + 36569533 36569573 41 AAATCACAAGCCGTCCCGATCCTTCTCTAGGTCTCGTAGGT AAATCACAAGCCGTCCCAATCCTTCTCTAGGTCTCGTAGGT < 41bp 1 0.0358536386477031 1 0.0797218680381775 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36569553 chr6:36569550 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_44188 0 0 1 0 2 SRSF3 chr6:36569485 3'AG 36569485 Downstream 66bp
chr6 36569550 36569550 1 + G A UCEC 36569553 + 36569533 36569573 41 AAATCACAAGCCGTCCCGATCCTTCTCTAGGTCTCGTAGGT AAATCACAAGCCGTCCCAATCCTTCTCTAGGTCTCGTAGGT < 41bp 1 0.0358536386477031 1 0.0797218680381775 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36569553 chr6:36569550 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_44188 0 0 1 0 2 SRSF3 chr6:36569571 5'GT 36569571 Upstream 22bp
chr11 123474221 123474221 1 + C T UCEC 123474241 + 123474221 123474261 41 CCCCCTGACGACGACTTCAACACAATGGGGTGAGTGAGGCC TCCCCTGACGACGACTTCAACACAATGGGGTGAGTGAGGCC < 41bp 1 0.797941946650261 1 0.480957180261612 experiment 0.404116106699478 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123474241 chr11:123474221 nonsynonymous SNV 0.997 1 1 hm5C_associated_SNPs_44189 0 0 0 0 2 GRAMD1B chr11:123474134 3'AG 123474134 Downstream 88bp
chr11 123474221 123474221 1 + C T UCEC 123474241 + 123474221 123474261 41 CCCCCTGACGACGACTTCAACACAATGGGGTGAGTGAGGCC TCCCCTGACGACGACTTCAACACAATGGGGTGAGTGAGGCC < 41bp 1 0.797941946650261 1 0.480957180261612 experiment 0.404116106699478 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123474241 chr11:123474221 nonsynonymous SNV 0.997 1 1 hm5C_associated_SNPs_44189 0 0 0 0 2 GRAMD1B chr11:123474249 5'GT 123474249 Upstream 29bp
chr22 40391439 40391439 1 + C T UCEC 40391436 + 40391416 40391456 41 ACGGACACTGGTTTCTACCGCGGCGTGAGCCGGGTCACGCT ACGGACACTGGTTTCTACCGCGGTGTGAGCCGGGTCACGCT < 41bp 1 0.547562265770113 1 0.909042477607727 experiment 0.904875468459774 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control FAM83F ENSG00000133477 CDS Human protein_coding chr22:40391436 chr22:40391439 synonymous SNV . 0 24 hm5C_associated_SNPs_44190 0 0 0 0 1 FAM83F chr22:40391535 5'GT 40391535 Upstream 97bp
chr2 102486868 102486868 1 + C T UCEC 102486859 + 102486839 102486879 41 ATGACCCCATCCAAGGAGGGCACTCTAATCGTCCGCCAGGT ATGACCCCATCCAAGGAGGGCACTCTAATTGTCCGCCAGGT < 41bp 1 0.0843531278343048 1 0.0860275626182556 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102486859 chr2:102486868 synonymous SNV . 0 30 hm5C_associated_SNPs_44192 0 0 1 0 1 MAP4K4 chr2:102486877 5'GT 102486877 Upstream 10bp
chr9 18504863 18504863 1 + G A UCEC 18504862 + 18504842 18504882 41 CGCTCCGAGGAGGACCGGGACGGCCTATGGGATGCCTGGGG CGCTCCGAGGAGGACCGGGACAGCCTATGGGATGCCTGGGG < 41bp 1 0.290809470897689 1 0.283362209796906 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18504862 chr9:18504863 nonsynonymous SNV 0.971 0 22 hm5C_associated_SNPs_44198 0 0 0 0 1 ADAMTSL1 chr9:18504954 5'GT 18504954 Upstream 92bp
chr3 127323800 127323800 1 + G A UCEC 127323809 + 127323789 127323829 41 GAGCGGGCCACGGAGGACGGCGAGGAGGACGAGGAGATGAT GAGCGGGCCACAGAGGACGGCGAGGAGGACGAGGAGATGAT < 41bp 1 0.60136126500799 1 0.497272074222565 experiment 0.79727746998402 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127323809 chr3:127323800 synonymous SNV . 0 12 hm5C_associated_SNPs_44200 0 0 1 0 2 MCM2 chr3:127323720 3'AG 127323720 Downstream 81bp
chr3 127323800 127323800 1 + G A UCEC 127323809 + 127323789 127323829 41 GAGCGGGCCACGGAGGACGGCGAGGAGGACGAGGAGATGAT GAGCGGGCCACAGAGGACGGCGAGGAGGACGAGGAGATGAT < 41bp 1 0.60136126500799 1 0.497272074222565 experiment 0.79727746998402 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127323809 chr3:127323800 synonymous SNV . 0 12 hm5C_associated_SNPs_44200 0 0 1 0 2 MCM2 chr3:127323739 3'AG 127323739 Downstream 62bp
chr17 38249479 38249479 1 + G A UCEC 38249489 + 38249469 38249509 41 CGAAGAGCCCGCAGCAGCGTCTCCTGGAGCTGCTCCACCGA CGAAGAGCCCACAGCAGCGTCTCCTGGAGCTGCTCCACCGA < 41bp 1 0.537613097682758 1 0.552766382694244 experiment 0.924773804634484 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NR1D1;THRA ENSG00000126351;ENSG00000126368 CDS Human other chr17:38249489 chr17:38249479 nonsynonymous SNV 1.000 5 11 hm5C_associated_SNPs_44201 0 0 0 0 1 NR1D1;THRA chr17:38249390 3'AG 38249390 Downstream 90bp
chr2 114670799 114670799 1 + C A UCEC 114670803 + 114670783 114670823 41 CCACAGTTTATCATCCCTTCCTGTAAGTATTTCTTTTAAGC CCACAGTTTATCATCCATTCCTGTAAGTATTTCTTTTAAGC < 41bp 1 0.453511775391614 1 0.191579759120941 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACTR3 ENSG00000115091 CDS Human protein_coding chr2:114670803 chr2:114670799 nonsynonymous SNV 0.997 5 17 hm5C_associated_SNPs_44202 0 0 1 0 2 ACTR3 chr2:114670749 3'AG 114670749 Downstream 51bp
chr2 114670799 114670799 1 + C A UCEC 114670803 + 114670783 114670823 41 CCACAGTTTATCATCCCTTCCTGTAAGTATTTCTTTTAAGC CCACAGTTTATCATCCATTCCTGTAAGTATTTCTTTTAAGC < 41bp 1 0.453511775391614 1 0.191579759120941 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACTR3 ENSG00000115091 CDS Human protein_coding chr2:114670803 chr2:114670799 nonsynonymous SNV 0.997 5 17 hm5C_associated_SNPs_44202 0 0 1 0 2 ACTR3 chr2:114670804 5'GT 114670804 Upstream 6bp
chr20 39744056 39744056 1 + G A UCEC 39744076 + 39744056 39744096 41 GATGATCTTTTTGATAGACTCAATGTGAGTAGATGAAGCAC AATGATCTTTTTGATAGACTCAATGTGAGTAGATGAAGCAC < 41bp 1 0.455554619912885 1 0.351229667663574 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TOP1 ENSG00000198900 CDS Human protein_coding chr20:39744076 chr20:39744056 nonsynonymous SNV 0.999 4 1 hm5C_associated_SNPs_44203 0 0 1 0 2 TOP1 chr20:39744011 3'AG 39744011 Downstream 46bp
chr20 39744056 39744056 1 + G A UCEC 39744076 + 39744056 39744096 41 GATGATCTTTTTGATAGACTCAATGTGAGTAGATGAAGCAC AATGATCTTTTTGATAGACTCAATGTGAGTAGATGAAGCAC < 41bp 1 0.455554619912885 1 0.351229667663574 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TOP1 ENSG00000198900 CDS Human protein_coding chr20:39744076 chr20:39744056 nonsynonymous SNV 0.999 4 1 hm5C_associated_SNPs_44203 0 0 1 0 2 TOP1 chr20:39744079 5'GT 39744079 Upstream 24bp
chr1 183519959 183519959 1 + C T UCEC 183519963 + 183519943 183519983 41 GCTCTCCTCCAACACACAACCATAATTCTGTTCCATTCTCC GCTCTCCTCCAACACATAACCATAATTCTGTTCCATTCTCC < 41bp 1 0.426368274218401 1 0.200506836175919 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMG7 ENSG00000116698 CDS Human protein_coding chr1:183519963 chr1:183519959 synonymous SNV . 0 17 hm5C_associated_SNPs_44211 0 0 1 0 2 SMG7 chr1:183519886 3'AG 183519886 Downstream 74bp
chr1 183519959 183519959 1 + C T UCEC 183519963 + 183519943 183519983 41 GCTCTCCTCCAACACACAACCATAATTCTGTTCCATTCTCC GCTCTCCTCCAACACATAACCATAATTCTGTTCCATTCTCC < 41bp 1 0.426368274218401 1 0.200506836175919 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMG7 ENSG00000116698 CDS Human protein_coding chr1:183519963 chr1:183519959 synonymous SNV . 0 17 hm5C_associated_SNPs_44211 0 0 1 0 2 SMG7 chr1:183520056 5'GT 183520056 Upstream 98bp
chr17 25904587 25904587 1 + C T UCEC 25904584 + 25904564 25904604 41 AGGCCAAGGTGAAGGAGACGCTGCGGCGCTGTGGGGCCAGC AGGCCAAGGTGAAGGAGACGCTGTGGCGCTGTGGGGCCAGC < 41bp 1 0.583780391112606 1 0.119805932044983 experiment 0.832439217774789 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KSR1 ENSG00000141068 CDS Human protein_coding chr17:25904584 chr17:25904587 nonsynonymous SNV 0.920 3 24 hm5C_associated_SNPs_44212 0 0 1 0 1 KSR1 chr17:25904665 5'GT 25904665 Upstream 79bp
chr9 88622365 88622365 1 + G A UCEC 88622373 + 88622353 88622393 41 TGTCAGTCCTCCGGTGCTTTCCCCCAAGTAAGTATTGTAAG TGTCAGTCCTCCAGTGCTTTCCCCCAAGTAAGTATTGTAAG < 41bp 1 0.173196751997546 1 0.15947750210762 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAA35 ENSG00000135040 CDS Human protein_coding chr9:88622373 chr9:88622365 synonymous SNV . 0 13 hm5C_associated_SNPs_44214 0 0 1 0 2 NAA35 chr9:88622273 3'AG 88622273 Downstream 93bp
chr9 88622365 88622365 1 + G A UCEC 88622373 + 88622353 88622393 41 TGTCAGTCCTCCGGTGCTTTCCCCCAAGTAAGTATTGTAAG TGTCAGTCCTCCAGTGCTTTCCCCCAAGTAAGTATTGTAAG < 41bp 1 0.173196751997546 1 0.15947750210762 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAA35 ENSG00000135040 CDS Human protein_coding chr9:88622373 chr9:88622365 synonymous SNV . 0 13 hm5C_associated_SNPs_44214 0 0 1 0 2 NAA35 chr9:88622379 5'GT 88622379 Upstream 15bp
chr9 88622365 88622365 1 + G A UCEC 88622374 + 88622354 88622394 41 GTCAGTCCTCCGGTGCTTTCCCCCAAGTAAGTATTGTAAGA GTCAGTCCTCCAGTGCTTTCCCCCAAGTAAGTATTGTAAGA < 41bp 1 0.50308992282669 1 0.623987793922424 experiment 0.99382015434662 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAA35 ENSG00000135040 CDS Human protein_coding chr9:88622374 chr9:88622365 synonymous SNV . 0 12 hm5C_associated_SNPs_44215 0 0 1 0 2 NAA35 chr9:88622273 3'AG 88622273 Downstream 93bp
chr9 88622365 88622365 1 + G A UCEC 88622374 + 88622354 88622394 41 GTCAGTCCTCCGGTGCTTTCCCCCAAGTAAGTATTGTAAGA GTCAGTCCTCCAGTGCTTTCCCCCAAGTAAGTATTGTAAGA < 41bp 1 0.50308992282669 1 0.623987793922424 experiment 0.99382015434662 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAA35 ENSG00000135040 CDS Human protein_coding chr9:88622374 chr9:88622365 synonymous SNV . 0 12 hm5C_associated_SNPs_44215 0 0 1 0 2 NAA35 chr9:88622379 5'GT 88622379 Upstream 15bp
chr17 48631743 48631743 1 + C T UCEC 48631727 + 48631707 48631747 41 TGTGTGTGCCTATTGACCGCCTTTTCCGAGCGCATGCGTCG TGTGTGTGCCTATTGACCGCCTTTTCCGAGCGCATGTGTCG < 41bp 1 0.036316977847622 1 0.0146062076091766 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPATA20 ENSG00000006282 CDS Human protein_coding chr17:48631727 chr17:48631743 nonsynonymous SNV 0.973 1 37 hm5C_associated_SNPs_44216 0 0 1 0 1 SPATA20 chr17:48631811 5'GT 48631811 Upstream 69bp
chr13 61034626 61034626 1 + G A UCEC 61034613 + 61034593 61034633 41 CACCAAGGATGCTGCGATTACAGATGACTGATGGTCATATA CACCAAGGATGCTGCGATTACAGATGACTGATGATCATATA < 41bp 1 0.665632408707629 1 0.581136226654053 experiment 0.668735182584743 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61034613 chr13:61034626 nonsynonymous SNV 1.000 5 34 hm5C_associated_SNPs_44217 0 0 1 0 1 TDRD3 chr13:61034674 5'GT 61034674 Upstream 49bp
chr11 62545489 62545489 1 + C T UCEC 62545497 + 62545477 62545517 41 GCACTGCCCATGCGCCCCGCCAGGGAGGGTGAACTCTACTT GCACTGCCCATGTGCCCCGCCAGGGAGGGTGAACTCTACTT < 41bp 1 0.75670783939054 1 0.790934562683105 experiment 0.48658432121892 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF6L ENSG00000162227 CDS Human protein_coding chr11:62545497 chr11:62545489 nonsynonymous SNV 0.987 2 13 hm5C_associated_SNPs_44218 0 0 1 0 1 TAF6L chr11:62545450 3'AG 62545450 Downstream 40bp
chr19 50338285 50338285 1 + C T UCEC 50338268 + 50338248 50338288 41 CTGCGTGCACTTCCCCCACACGGCGCCCTGTGAGGTGCGCG CTGCGTGCACTTCCCCCACACGGCGCCCTGTGAGGTGTGCG < 41bp 1 0.548563048448492 1 0.769653797149658 experiment 0.902873903103016 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50338268 chr19:50338285 nonsynonymous SNV 0.898 5 38 hm5C_associated_SNPs_44219 0 0 0 0 1 MED25 chr19:50338243 3'AG 50338243 Downstream 43bp
chr10 118306858 118306858 1 + G A UCEC 118306849 + 118306829 118306869 41 CTCGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTAC CTCGGCTGCTTCAGTGATGACTCCCCATGATCAGGAATTAC < 41bp 1 0.309971685072309 1 0.0317147374153137 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306849 chr10:118306858 stopgain 0.865 1 30 hm5C_associated_SNPs_44220 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 53bp
chr10 118306858 118306858 1 + G A UCEC 118306851 + 118306831 118306871 41 CGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGG CGGCTGCTTCAGTGATGACTCCCCATGATCAGGAATTACGG < 41bp 1 0.675715747029173 1 0.164736181497574 experiment 0.648568505941654 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306851 chr10:118306858 stopgain 0.865 1 28 hm5C_associated_SNPs_44221 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 53bp
chr10 118306858 118306858 1 + G A UCEC 118306853 + 118306833 118306873 41 GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAA GCTGCTTCAGTGATGACTCCCCATGATCAGGAATTACGGAA < 41bp 1 0.215357224391456 1 0.140176296234131 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306853 chr10:118306858 stopgain 0.865 1 26 hm5C_associated_SNPs_44222 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 53bp
chr10 118306858 118306858 1 + G A UCEC 118306854 + 118306834 118306874 41 CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAAA CTGCTTCAGTGATGACTCCCCATGATCAGGAATTACGGAAA < 41bp 1 0.679798543681697 1 0.432863712310791 experiment 0.640402912636605 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306854 chr10:118306858 stopgain 0.865 1 25 hm5C_associated_SNPs_44223 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 53bp
chr19 18053594 18053594 1 + C T UCEC 18053574 + 18053554 18053594 41 CGGCAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCC CGGCAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCT < 41bp 1 0.334263601928762 1 0.0779215693473816 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18053574 chr19:18053594 nonsynonymous SNV 0.162 2 41 hm5C_associated_SNPs_44224 0 0 1 0 1 CCDC124 chr19:18053654 5'GT 18053654 Upstream 61bp
chr19 18053594 18053594 1 + C T UCEC 18053575 + 18053555 18053595 41 GGCAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCCG GGCAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCTG < 41bp 1 0.758936692506223 1 0.674325227737427 experiment 0.482126614987554 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18053575 chr19:18053594 nonsynonymous SNV 0.162 2 40 hm5C_associated_SNPs_44225 0 0 1 0 1 CCDC124 chr19:18053654 5'GT 18053654 Upstream 61bp
chr11 9463666 9463666 1 + A G UCEC 9463671 + 9463651 9463691 41 TGGTATCAGGCACTGACTCACGGTCTTAATGAAGAACAAAG TGGTATCAGGCACTGGCTCACGGTCTTAATGAAGAACAAAG < 41bp 1 0.223746616607579 1 0.21760630607605 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9463671 chr11:9463666 nonsynonymous SNV 0.994 2 16 hm5C_associated_SNPs_44226 0 0 1 0 2 IPO7 chr11:9463628 3'AG 9463628 Downstream 39bp
chr11 9463666 9463666 1 + A G UCEC 9463671 + 9463651 9463691 41 TGGTATCAGGCACTGACTCACGGTCTTAATGAAGAACAAAG TGGTATCAGGCACTGGCTCACGGTCTTAATGAAGAACAAAG < 41bp 1 0.223746616607579 1 0.21760630607605 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9463671 chr11:9463666 nonsynonymous SNV 0.994 2 16 hm5C_associated_SNPs_44226 0 0 1 0 2 IPO7 chr11:9463744 5'GT 9463744 Upstream 79bp
chr16 842536 842536 1 + G A UCEC 842525 + 842505 842545 41 CCGGCTGTGCCTTCGGGAGGCGGCCGACGGCGCCGGGCAGA CCGGCTGTGCCTTCGGGAGGCGGCCGACGGCACCGGGCAGA < 41bp 1 0.522830704244051 1 0.592785477638245 experiment 0.954338591511898 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842525 chr16:842536 nonsynonymous SNV 0.001 0 32 hm5C_associated_SNPs_44228 0 0 1 0 2 CHTF18 chr16:842439 3'AG 842439 Downstream 98bp
chr16 842536 842536 1 + G A UCEC 842525 + 842505 842545 41 CCGGCTGTGCCTTCGGGAGGCGGCCGACGGCGCCGGGCAGA CCGGCTGTGCCTTCGGGAGGCGGCCGACGGCACCGGGCAGA < 41bp 1 0.522830704244051 1 0.592785477638245 experiment 0.954338591511898 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842525 chr16:842536 nonsynonymous SNV 0.001 0 32 hm5C_associated_SNPs_44228 0 0 1 0 2 CHTF18 chr16:842590 5'GT 842590 Upstream 55bp
chr7 43590118 43590118 1 + G A UCEC 43590119 + 43590099 43590139 41 ACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGCGGGTG ACAAGAAGGAGTACATCGAACGCATGGTGAAGTGGCGGGTG < 41bp 1 0.323258269001026 1 0.102189779281616 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43590119 chr7:43590118 synonymous SNV . 0 20 hm5C_associated_SNPs_44229 0 0 0 0 2 HECW1 chr7:43590044 3'AG 43590044 Downstream 75bp
chr7 43590118 43590118 1 + G A UCEC 43590119 + 43590099 43590139 41 ACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGCGGGTG ACAAGAAGGAGTACATCGAACGCATGGTGAAGTGGCGGGTG < 41bp 1 0.323258269001026 1 0.102189779281616 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43590119 chr7:43590118 synonymous SNV . 0 20 hm5C_associated_SNPs_44229 0 0 0 0 2 HECW1 chr7:43590190 5'GT 43590190 Upstream 73bp
chr11 4156353 4156353 1 + A C UCEC 4156342 + 4156322 4156362 41 AAATTCCTGATGACCTGAAGCAACTTTATAAAACTGTGTGG AAATTCCTGATGACCTGAAGCAACTTTATAACACTGTGTGG < 41bp 1 0.30827176681258 1 0.215743660926819 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RRM1 ENSG00000167325 CDS Human protein_coding chr11:4156342 chr11:4156353 nonsynonymous SNV 0.999 4 32 hm5C_associated_SNPs_44231 0 0 1 0 1 RRM1 chr11:4156312 3'AG 4156312 Downstream 42bp
chrX 117815667 117815667 1 + G A UCEC 117815659 + 117815639 117815679 41 TCTTCTATTGTGATATAGGTCAATGCTGGTCCATTAGCATA TCTTCTATTGTGATATAGGTCAATGCTGATCCATTAGCATA < 41bp 1 0.160302048947234 1 0.0500192940235138 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117815659 chrX:117815667 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_44232 0 0 1 0 2 DOCK11 chrX:117815657 3'AG 117815657 Downstream 11bp
chrX 117815667 117815667 1 + G A UCEC 117815659 + 117815639 117815679 41 TCTTCTATTGTGATATAGGTCAATGCTGGTCCATTAGCATA TCTTCTATTGTGATATAGGTCAATGCTGATCCATTAGCATA < 41bp 1 0.160302048947234 1 0.0500192940235138 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117815659 chrX:117815667 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_44232 0 0 1 0 2 DOCK11 chrX:117815757 5'GT 117815757 Upstream 91bp
chr11 123988384 123988384 1 + G A UCEC 123988382 + 123988362 123988402 41 ACTCTGGTCTATCTCCAGTGCCGCTGAAGAGTATCTCTGTG ACTCTGGTCTATCTCCAGTGCCACTGAAGAGTATCTCTGTG < 41bp 1 0.10412234533324 1 0.0671935081481934 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VWA5A ENSG00000110002 CDS Human protein_coding chr11:123988382 chr11:123988384 synonymous SNV . 0 23 hm5C_associated_SNPs_44236 0 0 1 0 1 VWA5A chr11:123988380 3'AG 123988380 Downstream 5bp
chr14 56083281 56083281 1 + G A UCEC 56083297 + 56083277 56083317 41 AAAGGCAAGAAGCATTGCCCCTCCACCAAGAGACTAAACAA AAAGACAAGAAGCATTGCCCCTCCACCAAGAGACTAAACAA < 41bp 1 0.7460271750215 1 0.951425313949585 experiment 0.507945649956999 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control KTN1 ENSG00000126777 CDS Human protein_coding chr14:56083297 chr14:56083281 synonymous SNV . 0 5 hm5C_associated_SNPs_44237 0 0 1 0 2 KTN1 chr14:56083235 3'AG 56083235 Downstream 47bp
chr14 56083281 56083281 1 + G A UCEC 56083297 + 56083277 56083317 41 AAAGGCAAGAAGCATTGCCCCTCCACCAAGAGACTAAACAA AAAGACAAGAAGCATTGCCCCTCCACCAAGAGACTAAACAA < 41bp 1 0.7460271750215 1 0.951425313949585 experiment 0.507945649956999 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control KTN1 ENSG00000126777 CDS Human protein_coding chr14:56083297 chr14:56083281 synonymous SNV . 0 5 hm5C_associated_SNPs_44237 0 0 1 0 2 KTN1 chr14:56083372 5'GT 56083372 Upstream 92bp
chr20 5163074 5163074 1 + C T UCEC 5163068 + 5163048 5163088 41 TACTGAGTCTGGTCAAGAAGCATTATCGACTGCAGTTCTAC TACTGAGTCTGGTCAAGAAGCATTATTGACTGCAGTTCTAC < 41bp 1 0.228760752061534 1 0.0921469032764435 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDS2 ENSG00000101290 CDS Human protein_coding chr20:5163068 chr20:5163074 stopgain 1.000 1 27 hm5C_associated_SNPs_44239 0 0 1 0 2 CDS2 chr20:5163033 3'AG 5163033 Downstream 42bp
chr20 5163074 5163074 1 + C T UCEC 5163068 + 5163048 5163088 41 TACTGAGTCTGGTCAAGAAGCATTATCGACTGCAGTTCTAC TACTGAGTCTGGTCAAGAAGCATTATTGACTGCAGTTCTAC < 41bp 1 0.228760752061534 1 0.0921469032764435 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDS2 ENSG00000101290 CDS Human protein_coding chr20:5163068 chr20:5163074 stopgain 1.000 1 27 hm5C_associated_SNPs_44239 0 0 1 0 2 CDS2 chr20:5163091 5'GT 5163091 Upstream 18bp
chr15 75949311 75949311 1 + G A UCEC 75949304 + 75949284 75949324 41 TCTGCTCTGCCTATGCCAGGCGCCTTCGCCAAGGTGAAGGA TCTGCTCTGCCTATGCCAGGCGCCTTCACCAAGGTGAAGGA < 41bp 1 0.358031243224381 1 0.253836512565613 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SNX33 ENSG00000173548 CDS Human protein_coding chr15:75949304 chr15:75949311 nonsynonymous SNV 0.964 1 28 hm5C_associated_SNPs_44241 0 0 1 0 1 SNX33 chr15:75949303 3'AG 75949303 Downstream 9bp
chr2 160623820 160623820 1 + C T UCEC 160623826 + 160623806 160623846 41 GATTCCGAAGAAGACGGAGACCATAACAGGACATTTGATAT GATTCCGAAGAAGATGGAGACCATAACAGGACATTTGATAT < 41bp 1 0.255498619099082 1 0.127755492925644 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH7 ENSG00000136536 CDS Human protein_coding chr2:160623826 chr2:160623820 nonsynonymous SNV 0.998 0 15 hm5C_associated_SNPs_44242 0 0 1 0 1 MARCH7 chr2:160623795 3'AG 160623795 Downstream 26bp
chr2 73471784 73471784 1 + G T UCEC 73471781 + 73471761 73471801 41 TGGTGGATGCAGTGATGATGCTCGATGATTTGCTGCAGCTT TGGTGGATGCAGTGATGATGCTCTATGATTTGCTGCAGCTT < 41bp 1 0.710266720122642 1 0.394076198339462 experiment 0.579466559754717 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT7 ENSG00000135624 CDS Human protein_coding chr2:73471781 chr2:73471784 nonsynonymous SNV 0.973 4 24 hm5C_associated_SNPs_44243 0 0 1 0 1 CCT7 chr2:73471843 5'GT 73471843 Upstream 60bp
chrX 40450493 40450493 1 + C A UCEC 40450488 + 40450468 40450508 41 GTGCTTTTCAATGTTTAGGACCTTTCTTGGCCAGGACTCGC GTGCTTTTCAATGTTTAGGACCTTTATTGGCCAGGACTCGC < 41bp 1 0.0296726778452317 1 0.00979825854301453 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40450488 chrX:40450493 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_44244 0 0 1 0 1 ATP6AP2 chrX:40450486 3'AG 40450486 Downstream 8bp
chrX 107911657 107911657 1 + G A UCEC 107911644 + 107911624 107911664 41 TTCACGGTTTCCCTGGTGTGCAGGGTCCCCCAGGCCCTCCT TTCACGGTTTCCCTGGTGTGCAGGGTCCCCCAGACCCTCCT < 41bp 1 0.796236549320369 1 0.767727017402649 experiment 0.407526901359261 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107911644 chrX:107911657 nonsynonymous SNV 0.997 4 34 hm5C_associated_SNPs_44245 0 0 1 0 1 COL4A5 chrX:107911734 5'GT 107911734 Upstream 78bp
chr16 1397792 1397792 1 + G A UCEC 1397801 + 1397781 1397821 41 AGGTGCTGCACGCCGCGGACCTGCTCCCCCTGGACGCCAAC AGGTGCTGCACACCGCGGACCTGCTCCCCCTGGACGCCAAC < 41bp 1 0.248609694995046 1 0.09564408659935 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1397801 chr16:1397792 nonsynonymous SNV 0.693 5 12 hm5C_associated_SNPs_44248 0 0 0 0 2 BAIAP3 chr16:1397702 3'AG 1397702 Downstream 91bp
chr16 1397792 1397792 1 + G A UCEC 1397801 + 1397781 1397821 41 AGGTGCTGCACGCCGCGGACCTGCTCCCCCTGGACGCCAAC AGGTGCTGCACACCGCGGACCTGCTCCCCCTGGACGCCAAC < 41bp 1 0.248609694995046 1 0.09564408659935 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1397801 chr16:1397792 nonsynonymous SNV 0.693 5 12 hm5C_associated_SNPs_44248 0 0 0 0 2 BAIAP3 chr16:1397822 5'GT 1397822 Upstream 31bp
chr2 32613941 32613941 1 + G A UCEC 32613943 + 32613923 32613963 41 GTGGCGTCCTCAGTGATGGACAGATTGTCTTACCTCTTACC GTGGCGTCCTCAGTGATGAACAGATTGTCTTACCTCTTACC < 41bp 1 0.131374902971965 1 0.774788618087769 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32613943 chr2:32613941 nonsynonymous SNV 1.000 3 19 hm5C_associated_SNPs_44252 0 0 1 0 1 BIRC6 chr2:32614011 5'GT 32614011 Upstream 71bp
chr7 43840157 43840157 1 + C T UCEC 43840161 + 43840141 43840181 41 GACCTGCTGAAAGGGTCGCTCCTCTTCACAGGTCAGTGCTA GACCTGCTGAAAGGGTTGCTCCTCTTCACAGGTCAGTGCTA < 41bp 1 0.134661841189777 1 0.0855674147605896 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BLVRA ENSG00000106605 CDS Human protein_coding chr7:43840161 chr7:43840157 nonsynonymous SNV 0.693 2 17 hm5C_associated_SNPs_44255 0 0 1 0 2 BLVRA chr7:43840064 3'AG 43840064 Downstream 94bp
chr7 43840157 43840157 1 + C T UCEC 43840161 + 43840141 43840181 41 GACCTGCTGAAAGGGTCGCTCCTCTTCACAGGTCAGTGCTA GACCTGCTGAAAGGGTTGCTCCTCTTCACAGGTCAGTGCTA < 41bp 1 0.134661841189777 1 0.0855674147605896 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BLVRA ENSG00000106605 CDS Human protein_coding chr7:43840161 chr7:43840157 nonsynonymous SNV 0.693 2 17 hm5C_associated_SNPs_44255 0 0 1 0 2 BLVRA chr7:43840171 5'GT 43840171 Upstream 15bp
chr19 11241989 11241989 1 + G A UCEC 11242009 + 11241989 11242029 41 GTGAACATCTGCCTGGAGTCCCGTCCCTGCCCAGAACCCTT ATGAACATCTGCCTGGAGTCCCGTCCCTGCCCAGAACCCTT < 41bp 1 0.0854254573709714 1 0.147691607475281 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LDLR ENSG00000130164 CDS Human protein_coding chr19:11242009 chr19:11241989 nonsynonymous SNV 0.028 2 1 hm5C_associated_SNPs_44256 0 0 1 0 2 LDLR chr19:11241957 3'AG 11241957 Downstream 33bp
chr19 11241989 11241989 1 + G A UCEC 11242009 + 11241989 11242029 41 GTGAACATCTGCCTGGAGTCCCGTCCCTGCCCAGAACCCTT ATGAACATCTGCCTGGAGTCCCGTCCCTGCCCAGAACCCTT < 41bp 1 0.0854254573709714 1 0.147691607475281 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LDLR ENSG00000130164 CDS Human protein_coding chr19:11242009 chr19:11241989 nonsynonymous SNV 0.028 2 1 hm5C_associated_SNPs_44256 0 0 1 0 2 LDLR chr19:11241963 3'AG 11241963 Downstream 27bp
chr17 7814186 7814186 1 + G A UCEC 7814192 + 7814172 7814212 41 CGCCGGGTCCCTACGCTACACCTCCGGGGTACGGGGCGGCC CGCCGGGTCCCTACACTACACCTCCGGGGTACGGGGCGGCC < 41bp 1 0.103236491229822 1 0.0317938029766083 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7814192 chr17:7814186 nonsynonymous SNV 0.998 2 15 hm5C_associated_SNPs_44258 0 0 0 0 1 CHD3 chr17:7814165 3'AG 7814165 Downstream 22bp
chr17 7814186 7814186 1 + G A UCEC 7814203 + 7814183 7814223 41 TACGCTACACCTCCGGGGTACGGGGCGGCCTTCAGCGCCGC TACACTACACCTCCGGGGTACGGGGCGGCCTTCAGCGCCGC < 41bp 1 0.79513661734669 1 0.75633978843689 experiment 0.409726765306621 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7814203 chr17:7814186 nonsynonymous SNV 0.998 2 4 hm5C_associated_SNPs_44259 0 0 0 0 1 CHD3 chr17:7814165 3'AG 7814165 Downstream 22bp
chr3 183435509 183435509 1 + G T UCEC 183435490 + 183435470 183435510 41 TATTATCAAAGAACAGTTTGCTCTTGAAATGAAGAATAAGG TATTATCAAAGAACAGTTTGCTCTTGAAATGAAGAATAATG < 41bp 1 0.06094342370789 1 0.0535396635532379 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183435490 chr3:183435509 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_44263 0 0 1 0 2 YEATS2 chr3:183435439 3'AG 183435439 Downstream 71bp
chr3 183435509 183435509 1 + G T UCEC 183435490 + 183435470 183435510 41 TATTATCAAAGAACAGTTTGCTCTTGAAATGAAGAATAAGG TATTATCAAAGAACAGTTTGCTCTTGAAATGAAGAATAATG < 41bp 1 0.06094342370789 1 0.0535396635532379 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183435490 chr3:183435509 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_44263 0 0 1 0 2 YEATS2 chr3:183435536 5'GT 183435536 Upstream 28bp
chr1 150280540 150280540 1 + C T UCEC 150280549 + 150280529 150280569 41 ATTATGAGAAGCCATGCCGCCGGCGACAGAGGGAAAGCTAT ATTATGAGAAGTCATGCCGCCGGCGACAGAGGGAAAGCTAT < 41bp 1 0.656535563551401 1 0.742811799049377 experiment 0.686928872897198 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPS21 ENSG00000187145 CDS Human other chr1:150280549 chr1:150280540 nonsynonymous SNV 0.957 0 12 hm5C_associated_SNPs_44264 0 0 1 0 1 MRPS21 chr1:150280482 3'AG 150280482 Downstream 59bp
chr1 22331981 22331981 1 + G A UCEC 22331969 + 22331949 22331989 41 CAGTATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGG CAGTATGAGAAAAGTGGAAGCTTCTACCACACATGTGGCGG < 41bp 1 0.181337865017214 1 0.194220036268234 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331969 chr1:22331981 synonymous SNV . 0 33 hm5C_associated_SNPs_44265 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 42bp
chr1 22331981 22331981 1 + G A UCEC 22331969 + 22331949 22331989 41 CAGTATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGG CAGTATGAGAAAAGTGGAAGCTTCTACCACACATGTGGCGG < 41bp 1 0.181337865017214 1 0.194220036268234 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331969 chr1:22331981 synonymous SNV . 0 33 hm5C_associated_SNPs_44265 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 57bp
chr1 22331981 22331981 1 + G A UCEC 22331972 + 22331952 22331992 41 TATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAG TATGAGAAAAGTGGAAGCTTCTACCACACATGTGGCGGTAG < 41bp 1 0.302027045575605 1 0.333017081022263 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331972 chr1:22331981 synonymous SNV . 0 30 hm5C_associated_SNPs_44266 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 42bp
chr1 22331981 22331981 1 + G A UCEC 22331972 + 22331952 22331992 41 TATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAG TATGAGAAAAGTGGAAGCTTCTACCACACATGTGGCGGTAG < 41bp 1 0.302027045575605 1 0.333017081022263 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331972 chr1:22331981 synonymous SNV . 0 30 hm5C_associated_SNPs_44266 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 57bp
chr1 22331981 22331981 1 + G A UCEC 22331975 + 22331955 22331995 41 GAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCT GAGAAAAGTGGAAGCTTCTACCACACATGTGGCGGTAGCCT < 41bp 1 0.444022891915214 1 0.121639579534531 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331975 chr1:22331981 synonymous SNV . 0 27 hm5C_associated_SNPs_44267 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 42bp
chr1 22331981 22331981 1 + G A UCEC 22331975 + 22331955 22331995 41 GAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCT GAGAAAAGTGGAAGCTTCTACCACACATGTGGCGGTAGCCT < 41bp 1 0.444022891915214 1 0.121639579534531 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331975 chr1:22331981 synonymous SNV . 0 27 hm5C_associated_SNPs_44267 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 57bp
chr1 22331981 22331981 1 + G A UCEC 22331976 + 22331956 22331996 41 AGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTC AGAAAAGTGGAAGCTTCTACCACACATGTGGCGGTAGCCTC < 41bp 1 0.572211527624225 1 0.214190512895584 experiment 0.85557694475155 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331976 chr1:22331981 synonymous SNV . 0 26 hm5C_associated_SNPs_44268 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 42bp
chr1 22331981 22331981 1 + G A UCEC 22331976 + 22331956 22331996 41 AGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTC AGAAAAGTGGAAGCTTCTACCACACATGTGGCGGTAGCCTC < 41bp 1 0.572211527624225 1 0.214190512895584 experiment 0.85557694475155 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331976 chr1:22331981 synonymous SNV . 0 26 hm5C_associated_SNPs_44268 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 57bp
chr1 22331981 22331981 1 + G A UCEC 22331978 + 22331958 22331998 41 AAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCAT AAAAGTGGAAGCTTCTACCACACATGTGGCGGTAGCCTCAT < 41bp 1 0.544291504295783 1 0.177401810884476 experiment 0.911416991408435 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331978 chr1:22331981 synonymous SNV . 0 24 hm5C_associated_SNPs_44269 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 42bp
chr1 22331981 22331981 1 + G A UCEC 22331978 + 22331958 22331998 41 AAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCAT AAAAGTGGAAGCTTCTACCACACATGTGGCGGTAGCCTCAT < 41bp 1 0.544291504295783 1 0.177401810884476 experiment 0.911416991408435 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331978 chr1:22331981 synonymous SNV . 0 24 hm5C_associated_SNPs_44269 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 57bp
chr1 22331981 22331981 1 + G A UCEC 22331980 + 22331960 22332000 41 AAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCATCG AAGTGGAAGCTTCTACCACACATGTGGCGGTAGCCTCATCG < 41bp 1 0.475111714969339 1 0.0516816973686218 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331980 chr1:22331981 synonymous SNV . 0 22 hm5C_associated_SNPs_44270 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 42bp
chr1 22331981 22331981 1 + G A UCEC 22331980 + 22331960 22332000 41 AAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCATCG AAGTGGAAGCTTCTACCACACATGTGGCGGTAGCCTCATCG < 41bp 1 0.475111714969339 1 0.0516816973686218 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331980 chr1:22331981 synonymous SNV . 0 22 hm5C_associated_SNPs_44270 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 57bp
chr1 22331981 22331981 1 + G A UCEC 22331987 + 22331967 22332007 41 AGCTTCTACCACACGTGTGGCGGTAGCCTCATCGCCCCCGA AGCTTCTACCACACATGTGGCGGTAGCCTCATCGCCCCCGA < 41bp 1 0.776933118283625 1 0.61956250667572 experiment 0.446133763432749 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331987 chr1:22331981 synonymous SNV . 0 15 hm5C_associated_SNPs_44271 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 42bp
chr1 22331981 22331981 1 + G A UCEC 22331987 + 22331967 22332007 41 AGCTTCTACCACACGTGTGGCGGTAGCCTCATCGCCCCCGA AGCTTCTACCACACATGTGGCGGTAGCCTCATCGCCCCCGA < 41bp 1 0.776933118283625 1 0.61956250667572 experiment 0.446133763432749 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331987 chr1:22331981 synonymous SNV . 0 15 hm5C_associated_SNPs_44271 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 57bp
chr1 22331981 22331981 1 + G A UCEC 22331993 + 22331973 22332013 41 TACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGT TACCACACATGTGGCGGTAGCCTCATCGCCCCCGATTGGGT < 41bp 1 0.26644820239624 1 0.0573326051235199 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331993 chr1:22331981 synonymous SNV . 0 9 hm5C_associated_SNPs_44272 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 42bp
chr1 22331981 22331981 1 + G A UCEC 22331993 + 22331973 22332013 41 TACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGT TACCACACATGTGGCGGTAGCCTCATCGCCCCCGATTGGGT < 41bp 1 0.26644820239624 1 0.0573326051235199 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331993 chr1:22331981 synonymous SNV . 0 9 hm5C_associated_SNPs_44272 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 57bp
chr1 22331981 22331981 1 + G A UCEC 22331994 + 22331974 22332014 41 ACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTT ACCACACATGTGGCGGTAGCCTCATCGCCCCCGATTGGGTT < 41bp 1 0.527792048098992 1 0.15044379234314 experiment 0.944415903802017 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331994 chr1:22331981 synonymous SNV . 0 8 hm5C_associated_SNPs_44273 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 42bp
chr1 22331981 22331981 1 + G A UCEC 22331994 + 22331974 22332014 41 ACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTT ACCACACATGTGGCGGTAGCCTCATCGCCCCCGATTGGGTT < 41bp 1 0.527792048098992 1 0.15044379234314 experiment 0.944415903802017 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331994 chr1:22331981 synonymous SNV . 0 8 hm5C_associated_SNPs_44273 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 57bp
chr1 22331981 22331981 1 + G A UCEC 22331996 + 22331976 22332016 41 CACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGT CACACATGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGT < 41bp 1 0.382313427222394 1 0.403843611478806 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331996 chr1:22331981 synonymous SNV . 0 6 hm5C_associated_SNPs_44274 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 42bp
chr1 22331981 22331981 1 + G A UCEC 22331996 + 22331976 22332016 41 CACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGT CACACATGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGT < 41bp 1 0.382313427222394 1 0.403843611478806 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331996 chr1:22331981 synonymous SNV . 0 6 hm5C_associated_SNPs_44274 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 57bp
chr1 22331981 22331981 1 + G A UCEC 22331999 + 22331979 22332019 41 ACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGAC ACATGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGAC < 41bp 1 0.458860179697657 1 0.697626650333405 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331999 chr1:22331981 synonymous SNV . 0 3 hm5C_associated_SNPs_44275 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 42bp
chr1 22331981 22331981 1 + G A UCEC 22331999 + 22331979 22332019 41 ACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGAC ACATGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGAC < 41bp 1 0.458860179697657 1 0.697626650333405 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331999 chr1:22331981 synonymous SNV . 0 3 hm5C_associated_SNPs_44275 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 57bp
chr1 22331981 22331981 1 + G A UCEC 22332001 + 22331981 22332021 41 GTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTG ATGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTG < 41bp 1 0.383927284389256 1 0.388680011034012 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332001 chr1:22331981 synonymous SNV . 0 1 hm5C_associated_SNPs_44276 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 42bp
chr1 22331981 22331981 1 + G A UCEC 22332001 + 22331981 22332021 41 GTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTG ATGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTG < 41bp 1 0.383927284389256 1 0.388680011034012 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332001 chr1:22331981 synonymous SNV . 0 1 hm5C_associated_SNPs_44276 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 57bp
chr19 35504584 35504584 1 + G A UCEC 35504567 + 35504547 35504587 41 CCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGACGCAG CCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGACACAG < 41bp 1 0.758343266442029 1 0.146686136722565 experiment 0.483313467115942 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504567 chr19:35504584 nonsynonymous SNV 0.996 1 38 hm5C_associated_SNPs_44278 0 0 1 0 1 GRAMD1A chr19:35504595 5'GT 35504595 Upstream 12bp
chr7 149426298 149426298 1 + C T UCEC 149426306 + 149426286 149426326 41 GGCTGAGGCCTGCGAGTCAGCCGTCTCGGGCAGGGTAGGGG GGCTGAGGCCTGTGAGTCAGCCGTCTCGGGCAGGGTAGGGG < 41bp 1 0.0381036396128005 1 0.203484386205673 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149426306 chr7:149426298 synonymous SNV . 0 13 hm5C_associated_SNPs_44282 0 0 0 0 2 KRBA1 chr7:149426279 3'AG 149426279 Downstream 20bp
chr7 149426298 149426298 1 + C T UCEC 149426306 + 149426286 149426326 41 GGCTGAGGCCTGCGAGTCAGCCGTCTCGGGCAGGGTAGGGG GGCTGAGGCCTGTGAGTCAGCCGTCTCGGGCAGGGTAGGGG < 41bp 1 0.0381036396128005 1 0.203484386205673 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149426306 chr7:149426298 synonymous SNV . 0 13 hm5C_associated_SNPs_44282 0 0 0 0 2 KRBA1;KRBA1 chr7:149426307 5'GT 149426307 Upstream 10bp
chr6 34730463 34730463 1 + G A UCEC 34730453 + 34730433 34730473 41 ATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATTGAC ATCAGAAATGGATGGAAGAGCAGGCTCAGAACCTGATTGAC < 41bp 1 0.647154781242612 1 0.782526731491089 experiment 0.705690437514776 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNRPC ENSG00000124562 CDS Human protein_coding chr6:34730453 chr6:34730463 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_44284 0 0 1 0 2 SNRPC chr6:34730372 3'AG 34730372 Downstream 92bp
chr6 34730463 34730463 1 + G A UCEC 34730453 + 34730433 34730473 41 ATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATTGAC ATCAGAAATGGATGGAAGAGCAGGCTCAGAACCTGATTGAC < 41bp 1 0.647154781242612 1 0.782526731491089 experiment 0.705690437514776 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNRPC ENSG00000124562 CDS Human protein_coding chr6:34730453 chr6:34730463 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_44284 0 0 1 0 2 SNRPC chr6:34730480 5'GT 34730480 Upstream 18bp
chr16 2577852 2577852 1 + C T UCEC 2577853 + 2577833 2577873 41 CACCTCCGCTCCTTCGAGGCCGATGCCTTCCAGGACTTGCT CACCTCCGCTCCTTCGAGGTCGATGCCTTCCAGGACTTGCT < 41bp 1 0.152469794065485 1 0.342213988304138 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2577853 chr16:2577852 nonsynonymous SNV 0.907 1 20 hm5C_associated_SNPs_44285 0 0 1 0 1 AMDHD2 chr16:2577774 3'AG 2577774 Downstream 79bp
chr11 830660 830660 1 + G A UCEC 830674 + 830654 830694 41 GAGCTGGAGCTGCAGAGCCGCGAGCAGGACCTGGAACGCGC GAGCTGAAGCTGCAGAGCCGCGAGCAGGACCTGGAACGCGC < 41bp 1 0.555545118958426 1 0.488420993089676 experiment 0.888909762083148 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:830674 chr11:830660 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_44287 0 0 1 0 2 CRACR2B chr11:830621 3'AG 830621 Downstream 40bp
chr11 830660 830660 1 + G A UCEC 830674 + 830654 830694 41 GAGCTGGAGCTGCAGAGCCGCGAGCAGGACCTGGAACGCGC GAGCTGAAGCTGCAGAGCCGCGAGCAGGACCTGGAACGCGC < 41bp 1 0.555545118958426 1 0.488420993089676 experiment 0.888909762083148 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:830674 chr11:830660 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_44287 0 0 1 0 2 CRACR2B chr11:830713 5'GT 830713 Upstream 54bp
chr11 58347083 58347083 1 + G A UCEC 58347094 + 58347074 58347114 41 GCAAGAAGAGTCCGCGACTCCTGTGAGTAACAGTCTTTCAG GCAAGAAGAATCCGCGACTCCTGTGAGTAACAGTCTTTCAG < 41bp 1 0.673491391848008 1 0.138572663068771 experiment 0.653017216303983 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58347094 chr11:58347083 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_44288 0 0 1 0 1 ZFP91 chr11:58347095 5'GT 58347095 Upstream 13bp
chr6 86176875 86176875 1 + C T UCEC 86176884 + 86176864 86176904 41 AAACATTAAAGCAAAGGGGCCACTAGCATCTCAAATATCAG AAACATTAAAGTAAAGGGGCCACTAGCATCTCAAATATCAG < 41bp 1 0.14975571716142 1 0.114269822835922 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NT5E ENSG00000135318 CDS Human protein_coding chr6:86176884 chr6:86176875 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_44289 0 0 0 0 1 NT5E chr6:86176778 3'AG 86176778 Downstream 98bp
chr17 80559253 80559253 1 + G A UCEC 80559263 + 80559243 80559283 41 GCGCCACAACGGTGACCAGCCGGAGCAGCCGGAGCTGAAGC GCGCCACAACAGTGACCAGCCGGAGCAGCCGGAGCTGAAGC < 41bp 1 0.723162908999803 1 0.909982085227966 experiment 0.553674182000394 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80559263 chr17:80559253 nonsynonymous SNV 0.001 3 11 hm5C_associated_SNPs_44291 0 0 1 0 1 FOXK2 chr17:80559179 3'AG 80559179 Downstream 75bp
chr17 80559253 80559253 1 + G A UCEC 80559268 + 80559248 80559288 41 ACAACGGTGACCAGCCGGAGCAGCCGGAGCTGAAGCGGATC ACAACAGTGACCAGCCGGAGCAGCCGGAGCTGAAGCGGATC < 41bp 1 0.270452658638856 1 0.309814751148224 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80559268 chr17:80559253 nonsynonymous SNV 0.001 3 6 hm5C_associated_SNPs_44292 0 0 1 0 1 FOXK2 chr17:80559179 3'AG 80559179 Downstream 75bp
chr17 43311076 43311076 1 + G T UCEC 43311084 + 43311064 43311104 41 CTCGAGTACCTGGCCTTTGCCCAGTGCTCTGTCACGTAAGC CTCGAGTACCTGTCCTTTGCCCAGTGCTCTGTCACGTAAGC < 41bp 1 0.218614960534736 1 0.582166731357574 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43311084 chr17:43311076 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_44294 0 0 1 0 2 FMNL1 chr17:43311015 3'AG 43311015 Downstream 62bp
chr17 43311076 43311076 1 + G T UCEC 43311084 + 43311064 43311104 41 CTCGAGTACCTGGCCTTTGCCCAGTGCTCTGTCACGTAAGC CTCGAGTACCTGTCCTTTGCCCAGTGCTCTGTCACGTAAGC < 41bp 1 0.218614960534736 1 0.582166731357574 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43311084 chr17:43311076 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_44294 0 0 1 0 2 FMNL1 chr17:43311098 5'GT 43311098 Upstream 23bp
chr11 67018209 67018209 1 + G A UCEC 67018208 + 67018188 67018228 41 AGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAGAGAA AGGTCTGGATGTCTGTCTTCCACTACCTCAGCCGCAGAGAA < 41bp 1 0.434487433531584 1 0.278157413005829 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KDM2A ENSG00000173120 CDS Human protein_coding chr11:67018208 chr11:67018209 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_44295 0 0 1 0 1 KDM2A chr11:67018269 5'GT 67018269 Upstream 61bp
chr1 31899637 31899637 1 + C A UCEC 31899651 + 31899631 31899671 41 TGTCTGCGTGTCCATCGCTGCTGTCCTGCCCAAGGTCCAGG TGTCTGAGTGTCCATCGCTGCTGTCCTGCCCAAGGTCCAGG < 41bp 1 0.169546179911756 1 0.0425865054130554 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31899651 chr1:31899637 stopgain 0.443 0 7 hm5C_associated_SNPs_44297 0 0 1 0 1 SERINC2 chr1:31899670 5'GT 31899670 Upstream 34bp
chr1 109806279 109806279 1 + G A UCEC 109806280 + 109806260 109806300 41 GCAGCAGCCTGGTGGCCTGGCATGGCCTCTCGCTGCCCATC GCAGCAGCCTGGTGGCCTGACATGGCCTCTCGCTGCCCATC < 41bp 1 0.319966000802807 1 0.137721925973892 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806280 chr1:109806279 stopgain 1.000 0 20 hm5C_associated_SNPs_44298 0 0 1 0 1 CELSR2 chr1:109806233 3'AG 109806233 Downstream 47bp
chr16 89623349 89623349 1 + C T UCEC 89623367 + 89623347 89623387 41 CTCTCATTGGCCCGCCGCCCCATGGGCCGAAGAAAATGATC CTTTCATTGGCCCGCCGCCCCATGGGCCGAAGAAAATGATC < 41bp 1 0.514488224265304 1 0.293934464454651 experiment 0.971023551469392 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPG7 ENSG00000197912 CDS Human protein_coding chr16:89623367 chr16:89623349 nonsynonymous SNV 0.846 5 3 hm5C_associated_SNPs_44299 0 0 1 0 1 SPG7 chr16:89623295 3'AG 89623295 Downstream 55bp
chr11 130003559 130003559 1 + G A UCEC 130003563 + 130003543 130003583 41 TGATTGAAGAAAGGAGGAACCAAAGCCTCTCTCTGCTCTAC TGATTGAAGAAAGGAGAAACCAAAGCCTCTCTCTGCTCTAC < 41bp 1 0.517827636257691 1 0.479012042284012 experiment 0.964344727484618 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130003563 chr11:130003559 synonymous SNV . 0 17 hm5C_associated_SNPs_44300 0 0 1 0 2 APLP2 chr11:130003524 3'AG 130003524 Downstream 36bp
chr11 130003559 130003559 1 + G A UCEC 130003563 + 130003543 130003583 41 TGATTGAAGAAAGGAGGAACCAAAGCCTCTCTCTGCTCTAC TGATTGAAGAAAGGAGAAACCAAAGCCTCTCTCTGCTCTAC < 41bp 1 0.517827636257691 1 0.479012042284012 experiment 0.964344727484618 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130003563 chr11:130003559 synonymous SNV . 0 17 hm5C_associated_SNPs_44300 0 0 1 0 2 APLP2 chr11:130003623 5'GT 130003623 Upstream 65bp
chr11 130003559 130003559 1 + G A UCEC 130003575 + 130003555 130003595 41 GGAGGAACCAAAGCCTCTCTCTGCTCTACAAAGTACCTTAT GGAGAAACCAAAGCCTCTCTCTGCTCTACAAAGTACCTTAT < 41bp 1 0.472057790550075 1 0.589008510112762 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130003575 chr11:130003559 synonymous SNV . 0 5 hm5C_associated_SNPs_44301 0 0 1 0 2 APLP2 chr11:130003524 3'AG 130003524 Downstream 36bp
chr11 130003559 130003559 1 + G A UCEC 130003575 + 130003555 130003595 41 GGAGGAACCAAAGCCTCTCTCTGCTCTACAAAGTACCTTAT GGAGAAACCAAAGCCTCTCTCTGCTCTACAAAGTACCTTAT < 41bp 1 0.472057790550075 1 0.589008510112762 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130003575 chr11:130003559 synonymous SNV . 0 5 hm5C_associated_SNPs_44301 0 0 1 0 2 APLP2 chr11:130003623 5'GT 130003623 Upstream 65bp
chr12 110770420 110770420 1 + G T UCEC 110770433 + 110770413 110770453 41 GGACAGAGTGGAAGGTGATACTTGTTCCCTTAATGAGTTTA GGACAGATTGGAAGGTGATACTTGTTCCCTTAATGAGTTTA < 41bp 1 0.164316637005355 1 0.108443975448608 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP2A2 ENSG00000174437 CDS Human protein_coding chr12:110770433 chr12:110770420 nonsynonymous SNV 0.985 1 8 hm5C_associated_SNPs_44302 0 0 1 0 1 ATP2A2 chr12:110770402 3'AG 110770402 Downstream 19bp
chr19 40715032 40715032 1 + C A UCEC 40715040 + 40715020 40715060 41 TAAGATCACAGTCCAGGCCTCTCCAACTCTGGATAAGCGGA TAAGATCACAGTACAGGCCTCTCCAACTCTGGATAAGCGGA < 41bp 1 0.208198118240459 1 0.907299935817719 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40715040 chr19:40715032 nonsynonymous SNV . 0 13 hm5C_associated_SNPs_44304 0 0 0 0 2 MAP3K10 chr19:40715010 3'AG 40715010 Downstream 23bp
chr19 40715032 40715032 1 + C A UCEC 40715040 + 40715020 40715060 41 TAAGATCACAGTCCAGGCCTCTCCAACTCTGGATAAGCGGA TAAGATCACAGTACAGGCCTCTCCAACTCTGGATAAGCGGA < 41bp 1 0.208198118240459 1 0.907299935817719 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40715040 chr19:40715032 nonsynonymous SNV . 0 13 hm5C_associated_SNPs_44304 0 0 0 0 2 MAP3K10 chr19:40715126 5'GT 40715126 Upstream 95bp
chr7 142561977 142561977 1 + G A UCEC 142561972 + 142561952 142561992 41 TACCGTCAGGCTGAGGAGCCCGACAGCCCTGACAGCGTTTC TACCGTCAGGCTGAGGAGCCCGACAACCCTGACAGCGTTTC < 41bp 1 0.657290911155307 1 0.262238800525665 experiment 0.685418177689386 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142561972 chr7:142561977 nonsynonymous SNV 0.885 1 26 hm5C_associated_SNPs_44306 0 0 0 0 1 EPHB6 chr7:142562020 5'GT 142562020 Upstream 44bp
chr17 7479917 7479917 1 + C T UCEC 7479907 + 7479887 7479927 41 TGTCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGT TGTCACGCCTGTATCGGGGGCACCAACGTGTGTGCTGAGGT < 41bp 1 0.467021867144841 1 0.342097103595734 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479907 chr17:7479917 nonsynonymous SNV 0.977 3 31 hm5C_associated_SNPs_44307 0 0 1 0 2 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 76bp
chr17 7479917 7479917 1 + C T UCEC 7479907 + 7479887 7479927 41 TGTCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGT TGTCACGCCTGTATCGGGGGCACCAACGTGTGTGCTGAGGT < 41bp 1 0.467021867144841 1 0.342097103595734 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479907 chr17:7479917 nonsynonymous SNV 0.977 3 31 hm5C_associated_SNPs_44307 0 0 1 0 2 EIF4A1 chr17:7480010 5'GT 7480010 Upstream 94bp
chr17 7479917 7479917 1 + C T UCEC 7479909 + 7479889 7479929 41 TCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGC TCACGCCTGTATCGGGGGCACCAACGTGTGTGCTGAGGTGC < 41bp 1 0.117697454018347 1 0.176065295934677 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479909 chr17:7479917 nonsynonymous SNV 0.977 3 29 hm5C_associated_SNPs_44308 0 0 1 0 2 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 76bp
chr17 7479917 7479917 1 + C T UCEC 7479909 + 7479889 7479929 41 TCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGC TCACGCCTGTATCGGGGGCACCAACGTGTGTGCTGAGGTGC < 41bp 1 0.117697454018347 1 0.176065295934677 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479909 chr17:7479917 nonsynonymous SNV 0.977 3 29 hm5C_associated_SNPs_44308 0 0 1 0 2 EIF4A1 chr17:7480010 5'GT 7480010 Upstream 94bp
chr17 7479917 7479917 1 + C T UCEC 7479910 + 7479890 7479930 41 CACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGCA CACGCCTGTATCGGGGGCACCAACGTGTGTGCTGAGGTGCA < 41bp 1 0.418037717099291 1 0.305774867534637 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479910 chr17:7479917 nonsynonymous SNV 0.977 3 28 hm5C_associated_SNPs_44309 0 0 1 0 2 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 76bp
chr17 7479917 7479917 1 + C T UCEC 7479910 + 7479890 7479930 41 CACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGCA CACGCCTGTATCGGGGGCACCAACGTGTGTGCTGAGGTGCA < 41bp 1 0.418037717099291 1 0.305774867534637 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479910 chr17:7479917 nonsynonymous SNV 0.977 3 28 hm5C_associated_SNPs_44309 0 0 1 0 2 EIF4A1 chr17:7480010 5'GT 7480010 Upstream 94bp
chr1 43893255 43893255 1 + C T UCEC 43893251 + 43893231 43893271 41 CACCATTCCGTCGAGACTTACAGGCTTACGCTGGGCGTCAG CACCATTCCGTCGAGACTTACAGGTTTACGCTGGGCGTCAG < 41bp 1 0.373139101271622 1 0.883818030357361 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43893251 chr1:43893255 nonsynonymous SNV 0.889 0 25 hm5C_associated_SNPs_44310 0 0 1 0 1 SZT2 chr1:43893201 3'AG 43893201 Downstream 55bp
chr11 120099665 120099665 1 + G T UCEC 120099678 + 120099658 120099698 41 ACGGGAAGCCCTGCGTCTGCCGCTATGGCCTGAGCCTGGCC ACGGGAATCCCTGCGTCTGCCGCTATGGCCTGAGCCTGGCC < 41bp 1 0.683239564835318 1 0.760499536991119 experiment 0.633520870329363 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OAF ENSG00000184232 CDS Human protein_coding chr11:120099678 chr11:120099665 nonsynonymous SNV 0.116 1 8 hm5C_associated_SNPs_44311 0 0 0 0 1 OAF chr11:120099577 3'AG 120099577 Downstream 89bp
chr11 120099665 120099665 1 + G T UCEC 120099680 + 120099660 120099700 41 GGGAAGCCCTGCGTCTGCCGCTATGGCCTGAGCCTGGCCTG GGGAATCCCTGCGTCTGCCGCTATGGCCTGAGCCTGGCCTG < 41bp 1 0.528513798652639 1 0.561908960342407 experiment 0.942972402694723 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OAF ENSG00000184232 CDS Human protein_coding chr11:120099680 chr11:120099665 nonsynonymous SNV 0.116 1 6 hm5C_associated_SNPs_44312 0 0 0 0 1 OAF chr11:120099577 3'AG 120099577 Downstream 89bp
chr11 46394404 46394404 1 + C T UCEC 46394413 + 46394393 46394433 41 GGTACTGGCAACGACTTGGCCCGAACCCTCAACTGGGGTGG GGTACTGGCAATGACTTGGCCCGAACCCTCAACTGGGGTGG < 41bp 1 0.302945139328156 1 0.164279013872147 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46394413 chr11:46394404 synonymous SNV . 0 12 hm5C_associated_SNPs_44314 0 0 0 0 2 DGKZ chr11:46394321 3'AG 46394321 Downstream 84bp
chr11 46394404 46394404 1 + C T UCEC 46394413 + 46394393 46394433 41 GGTACTGGCAACGACTTGGCCCGAACCCTCAACTGGGGTGG GGTACTGGCAATGACTTGGCCCGAACCCTCAACTGGGGTGG < 41bp 1 0.302945139328156 1 0.164279013872147 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46394413 chr11:46394404 synonymous SNV . 0 12 hm5C_associated_SNPs_44314 0 0 0 0 2 DGKZ chr11:46394434 5'GT 46394434 Upstream 31bp
chr11 46394404 46394404 1 + C T UCEC 46394414 + 46394394 46394434 41 GTACTGGCAACGACTTGGCCCGAACCCTCAACTGGGGTGGG GTACTGGCAATGACTTGGCCCGAACCCTCAACTGGGGTGGG < 41bp 1 0.116571966243764 1 0.0736207962036133 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46394414 chr11:46394404 synonymous SNV . 0 11 hm5C_associated_SNPs_44315 0 0 0 0 2 DGKZ chr11:46394321 3'AG 46394321 Downstream 84bp
chr11 46394404 46394404 1 + C T UCEC 46394414 + 46394394 46394434 41 GTACTGGCAACGACTTGGCCCGAACCCTCAACTGGGGTGGG GTACTGGCAATGACTTGGCCCGAACCCTCAACTGGGGTGGG < 41bp 1 0.116571966243764 1 0.0736207962036133 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46394414 chr11:46394404 synonymous SNV . 0 11 hm5C_associated_SNPs_44315 0 0 0 0 2 DGKZ chr11:46394434 5'GT 46394434 Upstream 31bp
chr11 46394404 46394404 1 + C T UCEC 46394418 + 46394398 46394438 41 TGGCAACGACTTGGCCCGAACCCTCAACTGGGGTGGGGTAA TGGCAATGACTTGGCCCGAACCCTCAACTGGGGTGGGGTAA < 41bp 1 0.0727507762187681 1 0.219025075435638 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46394418 chr11:46394404 synonymous SNV . 0 7 hm5C_associated_SNPs_44316 0 0 0 0 2 DGKZ chr11:46394321 3'AG 46394321 Downstream 84bp
chr11 46394404 46394404 1 + C T UCEC 46394418 + 46394398 46394438 41 TGGCAACGACTTGGCCCGAACCCTCAACTGGGGTGGGGTAA TGGCAATGACTTGGCCCGAACCCTCAACTGGGGTGGGGTAA < 41bp 1 0.0727507762187681 1 0.219025075435638 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46394418 chr11:46394404 synonymous SNV . 0 7 hm5C_associated_SNPs_44316 0 0 0 0 2 DGKZ chr11:46394434 5'GT 46394434 Upstream 31bp
chr11 57574442 57574442 1 + G A UCEC 57574432 + 57574412 57574452 41 AAACGATACAGTGGATTTCCCTAAAAGAACGAGTCCAGCTC AAACGATACAGTGGATTTCCCTAAAAGAACAAGTCCAGCTC < 41bp 1 0.699462574559217 1 0.520591735839844 experiment 0.601074850881566 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57574432 chr11:57574442 synonymous SNV . 0 31 hm5C_associated_SNPs_44317 0 0 1 0 2 CTNND1 chr11:57574387 3'AG 57574387 Downstream 56bp
chr11 57574442 57574442 1 + G A UCEC 57574432 + 57574412 57574452 41 AAACGATACAGTGGATTTCCCTAAAAGAACGAGTCCAGCTC AAACGATACAGTGGATTTCCCTAAAAGAACAAGTCCAGCTC < 41bp 1 0.699462574559217 1 0.520591735839844 experiment 0.601074850881566 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57574432 chr11:57574442 synonymous SNV . 0 31 hm5C_associated_SNPs_44317 0 0 1 0 2 CTNND1 chr11:57574455 5'GT 57574455 Upstream 14bp
chr17 16285400 16285400 1 + A G UCEC 16285385 + 16285365 16285405 41 GCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAACATCC GCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAGCATCC < 41bp 1 0.288045845541878 1 0.122804522514343 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBB ENSG00000170315 CDS Human protein_coding chr17:16285385 chr17:16285400 nonsynonymous SNV 0.999 0 36 hm5C_associated_SNPs_44318 0 0 1 0 1 UBB chr17:16285444 5'GT 16285444 Upstream 45bp
chr19 55823348 55823348 1 + G A UCEC 55823357 + 55823337 55823377 41 CCCACCCGGCCGCCCAGACCCAGAGCTGAGCAGCTCTCCCC CCCACCCGGCCACCCAGACCCAGAGCTGAGCAGCTCTCCCC < 41bp 1 0.76559273208394 1 0.843849301338196 experiment 0.46881453583212 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55823357 chr19:55823348 nonsynonymous SNV 0.842 1 12 hm5C_associated_SNPs_44319 0 0 0 0 1 BRSK1 chr19:55823279 3'AG 55823279 Downstream 70bp
chr6 4935975 4935975 1 + G A UCEC 4935980 + 4935960 4936000 41 CTTGTTATCCACAAAGTCCTCAGAGAATAACTCACTAAATC CTTGTTATCCACAAAATCCTCAGAGAATAACTCACTAAATC < 41bp 1 0.644144627244019 1 0.809953927993774 experiment 0.711710745511962 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDYL ENSG00000153046 CDS Human protein_coding chr6:4935980 chr6:4935975 synonymous SNV . 0 16 hm5C_associated_SNPs_44320 0 0 1 0 1 CDYL chr6:4936005 5'GT 4936005 Upstream 31bp
chr19 46202144 46202144 1 + G A UCEC 46202126 + 46202106 46202146 41 CTACAGCCACTTCCCTCGCACGGTCCGCTGGTTCCATCGGC CTACAGCCACTTCCCTCGCACGGTCCGCTGGTTCCATCAGC < 41bp 1 0.121111200109931 1 0.725505709648132 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control QPCTL ENSG00000011478 CDS Human protein_coding chr19:46202126 chr19:46202144 nonsynonymous SNV 0.985 2 39 hm5C_associated_SNPs_44321 0 0 0 0 2 QPCTL chr19:46202059 3'AG 46202059 Downstream 86bp
chr19 46202144 46202144 1 + G A UCEC 46202126 + 46202106 46202146 41 CTACAGCCACTTCCCTCGCACGGTCCGCTGGTTCCATCGGC CTACAGCCACTTCCCTCGCACGGTCCGCTGGTTCCATCAGC < 41bp 1 0.121111200109931 1 0.725505709648132 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control QPCTL ENSG00000011478 CDS Human protein_coding chr19:46202126 chr19:46202144 nonsynonymous SNV 0.985 2 39 hm5C_associated_SNPs_44321 0 0 0 0 2 QPCTL chr19:46202158 5'GT 46202158 Upstream 15bp
chr11 64056104 64056104 1 + C A UCEC 64056090 + 64056070 64056110 41 CCCAGAGCACCAGCCACATCCTCAATGGGCAGGTCTTTGCC CCCAGAGCACCAGCCACATCCTCAATGGGCAGGTATTTGCC < 41bp 1 0.615415990105939 1 0.95353889465332 experiment 0.769168019788122 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control GPR137 ENSG00000173264 CDS Human protein_coding chr11:64056090 chr11:64056104 synonymous SNV . 0 35 hm5C_associated_SNPs_44322 0 0 0 0 2 GPR137 chr11:64056075 3'AG 64056075 Downstream 30bp
chr11 64056104 64056104 1 + C A UCEC 64056090 + 64056070 64056110 41 CCCAGAGCACCAGCCACATCCTCAATGGGCAGGTCTTTGCC CCCAGAGCACCAGCCACATCCTCAATGGGCAGGTATTTGCC < 41bp 1 0.615415990105939 1 0.95353889465332 experiment 0.769168019788122 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control GPR137 ENSG00000173264 CDS Human protein_coding chr11:64056090 chr11:64056104 synonymous SNV . 0 35 hm5C_associated_SNPs_44322 0 0 0 0 2 GPR137 chr11:64056193 5'GT 64056193 Upstream 90bp
chr11 64032915 64032915 1 + G A UCEC 64032900 + 64032880 64032920 41 CATCAGCGGAAGGCAGTCACCCTCACCCGCCGCCTGCTGGA CATCAGCGGAAGGCAGTCACCCTCACCCGCCGCCTACTGGA < 41bp 1 0.199770625721294 1 0.0596483051776886 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64032900 chr11:64032915 synonymous SNV . 0 36 hm5C_associated_SNPs_44323 0 0 0 0 1 PLCB3 chr11:64032974 5'GT 64032974 Upstream 60bp
chr17 37360877 37360877 1 + C T UCEC 37360862 + 37360842 37360882 41 CAGGCCAAGAAGGAGGAGATCATCAAGACTTTATCCAAGGA CAGGCCAAGAAGGAGGAGATCATCAAGACTTTATCTAAGGA < 41bp 1 0.45257178060324 1 0.183613955974579 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360862 chr17:37360877 synonymous SNV . 0 36 hm5C_associated_SNPs_44325 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 100bp
chr17 37360877 37360877 1 + C T UCEC 37360876 + 37360856 37360896 41 GGAGATCATCAAGACTTTATCCAAGGAGGAAGAGACCAAGA GGAGATCATCAAGACTTTATCTAAGGAGGAAGAGACCAAGA < 41bp 1 0.747676299068235 1 0.82434606552124 experiment 0.504647401863529 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360876 chr17:37360877 synonymous SNV . 0 22 hm5C_associated_SNPs_44326 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 100bp
chr3 195398107 195398107 1 + G A UCEC 195398099 + 195398079 195398119 41 AAGGTTTATGGAGCGATACGCCCCCATCGCGAAGGACCTGG AAGGTTTATGGAGCGATACGCCCCCATCACGAAGGACCTGG < 41bp 1 0.147334500647706 1 0.0388888418674469 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195398099 chr3:195398107 . . 0 29 hm5C_associated_SNPs_44327 0 0 0 0 1 SDHAP2 chr3:195398171 5'GT 195398171 Upstream 65bp
chr11 74329639 74329639 1 + G A UCEC 74329623 + 74329603 74329643 41 AGCTGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTT AGCTGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCATCTT < 41bp 1 0.563516152794366 1 0.0715704560279846 experiment 0.872967694411267 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329623 chr11:74329639 synonymous SNV . 0 37 hm5C_associated_SNPs_44328 0 0 0 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 58bp
chr11 74329639 74329639 1 + G A UCEC 74329626 + 74329606 74329646 41 TGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCA TGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCATCTTCCA < 41bp 1 0.667886486514409 1 0.19574773311615 experiment 0.664227026971182 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329626 chr11:74329639 synonymous SNV . 0 34 hm5C_associated_SNPs_44329 0 0 0 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 58bp
chr11 74329639 74329639 1 + G A UCEC 74329633 + 74329613 74329653 41 CCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCAAAAAGTT CCTAGAGCTCCTGCTGAATCCTCTTCATCTTCCAAAAAGTT < 41bp 1 0.130075225459083 1 0.0784773826599121 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329633 chr11:74329639 synonymous SNV . 0 27 hm5C_associated_SNPs_44330 0 0 0 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 58bp
chr11 74329639 74329639 1 + G A UCEC 74329645 + 74329625 74329665 41 GCTGAATCCTCTTCGTCTTCCAAAAAGTTTGAGCAGTCACA GCTGAATCCTCTTCATCTTCCAAAAAGTTTGAGCAGTCACA < 41bp 1 0.441547783631221 1 0.744121789932251 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329645 chr11:74329639 synonymous SNV . 0 15 hm5C_associated_SNPs_44331 0 0 0 0 1 POLD3 chr11:74329582 3'AG 74329582 Downstream 58bp
chr14 73725987 73725987 1 + C T UCEC 73725978 + 73725958 73725998 41 TTTTGCTTCTTCTTTCTAGACTCCAGAGGCCAGTGGTGGGC TTTTGCTTCTTCTTTCTAGACTCCAGAGGTCAGTGGTGGGC < 41bp 1 0.660159896480506 1 0.772560954093933 experiment 0.679680207038988 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74772;RNA-BisSeq;HCT116;Control PAPLN ENSG00000100767 CDS Human protein_coding chr14:73725978 chr14:73725987 synonymous SNV . 0 30 hm5C_associated_SNPs_44334 0 0 1 0 1 PAPLN chr14:73725977 3'AG 73725977 Downstream 11bp
chr1 236711362 236711362 1 + A G UCEC 236711377 + 236711357 236711397 41 GGCGTACACAGCCTGGAGTACAAACACAGATTTAAAGAGCT GGCGTGCACAGCCTGGAGTACAAACACAGATTTAAAGAGCT < 41bp 1 0.0786064119588236 1 0.155280888080597 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LGALS8 ENSG00000116977 CDS Human protein_coding chr1:236711377 chr1:236711362 synonymous SNV . 0 6 hm5C_associated_SNPs_44335 0 0 1 0 1 LGALS8 chr1:236711312 3'AG 236711312 Downstream 51bp
chr7 11076068 11076068 1 + G A UCEC 11076066 + 11076046 11076086 41 CAAGGATCAATGCCCGGCTTCAGCAGTATCGTGCCAAAGCA CAAGGATCAATGCCCGGCTTCAACAGTATCGTGCCAAAGCA < 41bp 1 0.600521160177377 1 0.0930892527103424 experiment 0.798957679645246 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHF14 ENSG00000106443 CDS Human protein_coding chr7:11076066 chr7:11076068 synonymous SNV . 0 23 hm5C_associated_SNPs_44336 0 0 1 0 1 PHF14 chr7:11076045 3'AG 11076045 Downstream 24bp
chr17 7463164 7463164 1 + G T UCEC 7463183 + 7463163 7463203 41 AGCAGCACTCTGTCCTGCACCTGGTTCCCATTAACGCCACC ATCAGCACTCTGTCCTGCACCTGGTTCCCATTAACGCCACC < 41bp 1 0.418659865887247 1 0.230528771877289 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNFSF12-TNFSF13;TNFSF13;TNFSF13 ENSG00000161955;ENSG00000239697;ENSG00000248871 CDS Human other chr17:7463183 chr17:7463164 nonsynonymous SNV 0.772 1 2 hm5C_associated_SNPs_44338 0 0 0 0 1 TNFSF12-TNFSF13;TNFSF13;TNFSF13 chr17:7463163 3'AG 7463163 Downstream 2bp
chr19 1036136 1036136 1 + C A UCEC 1036125 + 1036105 1036145 41 TCCCGGCCCCTTTCCCTCACCCAGGCCAAGACTAAGGGGCT TCCCGGCCCCTTTCCCTCACCCAGGCCAAGAATAAGGGGCT < 41bp 1 0.302913782393049 1 0.675444364547729 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1036125 chr19:1036136 nonsynonymous SNV 0.964 2 32 hm5C_associated_SNPs_44340 0 0 1 0 2 CNN2 chr19:1036066 3'AG 1036066 Downstream 71bp
chr19 1036136 1036136 1 + C A UCEC 1036125 + 1036105 1036145 41 TCCCGGCCCCTTTCCCTCACCCAGGCCAAGACTAAGGGGCT TCCCGGCCCCTTTCCCTCACCCAGGCCAAGAATAAGGGGCT < 41bp 1 0.302913782393049 1 0.675444364547729 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1036125 chr19:1036136 nonsynonymous SNV 0.964 2 32 hm5C_associated_SNPs_44340 0 0 1 0 2 CNN2 chr19:1036129 3'AG 1036129 Downstream 8bp
chr15 75949305 75949305 1 + G A UCEC 75949304 + 75949284 75949324 41 TCTGCTCTGCCTATGCCAGGCGCCTTCGCCAAGGTGAAGGA TCTGCTCTGCCTATGCCAGGCACCTTCGCCAAGGTGAAGGA < 41bp 1 0.327132364275415 1 0.0870012044906616 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SNX33 ENSG00000173548 CDS Human protein_coding chr15:75949304 chr15:75949305 nonsynonymous SNV 0.960 1 22 hm5C_associated_SNPs_44341 0 0 1 0 1 SNX33 chr15:75949303 3'AG 75949303 Downstream 3bp
chr7 98591316 98591316 1 + A G UCEC 98591325 + 98591305 98591345 41 CCCTGGAAGGCATCGTCGATCAGATGGTCTGGTTCAGAGAA CCCTGGAAGGCGTCGTCGATCAGATGGTCTGGTTCAGAGAA < 41bp 1 0.344410444214022 1 0.601672351360321 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98591325 chr7:98591316 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_44350 0 0 1 0 1 TRRAP chr7:98591360 5'GT 98591360 Upstream 45bp
chrX 128695215 128695215 1 + A G UCEC 128695224 + 128695204 128695244 41 TGTGAAGGAACAAGAATGGTCCATGGCTGTAGAGAGAGGTT TGTGAAGGAACGAGAATGGTCCATGGCTGTAGAGAGAGGTT < 41bp 1 0.102790662634893 1 0.0787133574485779 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128695224 chrX:128695215 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_44351 0 0 1 0 2 OCRL chrX:128695156 3'AG 128695156 Downstream 60bp
chrX 128695215 128695215 1 + A G UCEC 128695224 + 128695204 128695244 41 TGTGAAGGAACAAGAATGGTCCATGGCTGTAGAGAGAGGTT TGTGAAGGAACGAGAATGGTCCATGGCTGTAGAGAGAGGTT < 41bp 1 0.102790662634893 1 0.0787133574485779 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128695224 chrX:128695215 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_44351 0 0 1 0 2 OCRL chrX:128695270 5'GT 128695270 Upstream 56bp
chr6 31929385 31929385 1 + C G UCEC 31929378 + 31929358 31929398 41 CAGAGCCTCCATCTCAGGAGCAGTGGGCCATCCCTGTGGAC CAGAGCCTCCATCTCAGGAGCAGTGGGGCATCCCTGTGGAC < 41bp 1 0.27002251362004 1 0.333199799060822 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31929378 chr6:31929385 nonsynonymous SNV 0.810 4 28 hm5C_associated_SNPs_44352 0 0 1 0 2 SKIV2L chr6:31929324 3'AG 31929324 Downstream 62bp
chr6 31929385 31929385 1 + C G UCEC 31929378 + 31929358 31929398 41 CAGAGCCTCCATCTCAGGAGCAGTGGGCCATCCCTGTGGAC CAGAGCCTCCATCTCAGGAGCAGTGGGGCATCCCTGTGGAC < 41bp 1 0.27002251362004 1 0.333199799060822 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31929378 chr6:31929385 nonsynonymous SNV 0.810 4 28 hm5C_associated_SNPs_44352 0 0 1 0 2 SKIV2L chr6:31929452 5'GT 31929452 Upstream 68bp
chr3 127398879 127398879 1 + C T UCEC 127398863 + 127398843 127398883 41 GCCTATGATGTGCTGAGCGTCGCCGACATGTACCTGCTGCC GCCTATGATGTGCTGAGCGTCGCCGACATGTACCTGTTGCC < 41bp 1 0.60900444471215 1 0.81798779964447 experiment 0.7819911105757 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127398863 chr3:127398879 synonymous SNV . 0 37 hm5C_associated_SNPs_44353 0 0 0 0 1 ABTB1 chr3:127398828 3'AG 127398828 Downstream 52bp
chr17 79425974 79425974 1 + G A UCEC 79425992 + 79425972 79426012 41 GCGCAGAGCAGAGCGCCGCCCTAGGTGAGCAGGGCCAGGAA GCACAGAGCAGAGCGCCGCCCTAGGTGAGCAGGGCCAGGAA < 41bp 1 0.548980077436075 1 0.843108773231506 experiment 0.902039845127851 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79425992 chr17:79425974 nonsynonymous SNV 0.003 0 3 hm5C_associated_SNPs_44357 0 0 0 0 1 BAHCC1 chr17:79425995 5'GT 79425995 Upstream 22bp
chr8 145139705 145139705 1 + G A UCEC 145139712 + 145139692 145139732 41 TACTTGCTCCCCGGCCTCTCCCGCTTCGTCTCCATCGGCCT TACTTGCTCCCCGACCTCTCCCGCTTCGTCTCCATCGGCCT < 41bp 1 0.213578186766444 1 0.029585212469101 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139712 chr8:145139705 nonsynonymous SNV 0.801 1 14 hm5C_associated_SNPs_44358 0 0 0 0 1 GPAA1 chr8:145139625 3'AG 145139625 Downstream 81bp
chr6 158497778 158497778 1 + C T UCEC 158497758 + 158497738 158497778 41 AAGCGACAAATGCCGCACCCCCGCCTGGACAGACAGGGTGC AAGCGACAAATGCCGCACCCCCGCCTGGACAGACAGGGTGT < 41bp 1 0.115932353862707 1 0.160427570343018 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158497758 chr6:158497778 synonymous SNV . 0 41 hm5C_associated_SNPs_44364 0 0 1 0 1 SYNJ2 chr6:158497814 5'GT 158497814 Upstream 37bp
chr7 35943889 35943889 1 + G T UCEC 35943897 + 35943877 35943917 41 AACAAGAAGAAAGGGAAGATCTTTTAAACTCTCTATTGACC AACAAGAAGAAATGGAAGATCTTTTAAACTCTCTATTGACC < 41bp 1 0.0476860223018829 1 0.0601078569889069 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SEPT7 ENSG00000122545 CDS Human protein_coding chr7:35943897 chr7:35943889 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_44365 0 0 1 0 1 SEPT7 chr7:35943864 3'AG 35943864 Downstream 26bp
chr7 44733446 44733446 1 + G A UCEC 44733426 + 44733406 44733446 41 GCTACATGTTCCTTGCAGATCGGCTTCACCACCGACCCTCG GCTACATGTTCCTTGCAGATCGGCTTCACCACCGACCCTCA < 41bp 1 0.623324459468579 1 0.253660380840302 experiment 0.753351081062842 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44733426 chr7:44733446 nonsynonymous SNV 0.991 5 41 hm5C_associated_SNPs_44366 0 0 0 0 1 OGDH chr7:44733424 3'AG 44733424 Downstream 23bp
chr7 44733446 44733446 1 + G A UCEC 44733465 + 44733445 44733485 41 CGGATGGCCCGCTCCTCCCCCTACCCCACTGACGTGGCCCG CAGATGGCCCGCTCCTCCCCCTACCCCACTGACGTGGCCCG < 41bp 1 0.148853591924141 1 0.269967019557953 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44733465 chr7:44733446 nonsynonymous SNV 0.991 5 2 hm5C_associated_SNPs_44367 0 0 0 0 1 OGDH chr7:44733424 3'AG 44733424 Downstream 23bp
chr2 73471150 73471150 1 + C T UCEC 73471157 + 73471137 73471177 41 ATCAAAGAGATTGCTGTGACCGTGAAGAAGGCAGATAAAGT ATCAAAGAGATTGTTGTGACCGTGAAGAAGGCAGATAAAGT < 41bp 1 0.445276970047143 1 0.670185685157776 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CCT7 ENSG00000135624 CDS Human protein_coding chr2:73471157 chr2:73471150 nonsynonymous SNV 0.997 1 14 hm5C_associated_SNPs_44370 0 0 1 0 1 CCT7 chr2:73471125 3'AG 73471125 Downstream 26bp
chr2 73471150 73471150 1 + C T UCEC 73471168 + 73471148 73471188 41 TGCTGTGACCGTGAAGAAGGCAGATAAAGTGTAAGTCTGTA TGTTGTGACCGTGAAGAAGGCAGATAAAGTGTAAGTCTGTA < 41bp 1 0.294429539714947 1 0.466152638196945 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CCT7 ENSG00000135624 CDS Human protein_coding chr2:73471168 chr2:73471150 nonsynonymous SNV 0.997 1 3 hm5C_associated_SNPs_44371 0 0 1 0 1 CCT7 chr2:73471125 3'AG 73471125 Downstream 26bp
chr6 31525852 31525852 1 + C T UCEC 31525833 + 31525813 31525853 41 GAAACCCAGGAACCTGAGTCCTTCTCAGCCTGGTCAGATCG GAAACCCAGGAACCTGAGTCCTTCTCAGCCTGGTCAGATTG < 41bp 1 0.277500091938199 1 0.1507368683815 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NFKBIL1 ENSG00000204498 CDS Human protein_coding chr6:31525833 chr6:31525852 nonsynonymous SNV 0.998 3 40 hm5C_associated_SNPs_44374 0 0 1 0 1 NFKBIL1 chr6:31525799 3'AG 31525799 Downstream 54bp
chr7 70252222 70252222 1 + A C UCEC 70252228 + 70252208 70252248 41 GTTCGGCCACAAGGATGGCCCCAGTGTGCAGAACTTTAGCA GTTCGGCCACAAGGCTGGCCCCAGTGTGCAGAACTTTAGCA < 41bp 1 0.158460638011605 1 0.0669603049755096 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:70252228 chr7:70252222 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_44379 0 0 1 0 1 AUTS2 chr7:70252195 3'AG 70252195 Downstream 28bp
chr19 17273853 17273853 1 + G T UCEC 17273851 + 17273831 17273871 41 TTTGAAGACTTCGAGAGGAACAGCTTTGAGCAGTTCTGCAT TTTGAAGACTTCGAGAGGAACATCTTTGAGCAGTTCTGCAT < 41bp 1 0.114606058589553 1 0.0505989491939545 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17273851 chr19:17273853 nonsynonymous SNV 0.995 5 23 hm5C_associated_SNPs_44380 0 0 1 0 2 MYO9B chr19:17273798 3'AG 17273798 Downstream 56bp
chr19 17273853 17273853 1 + G T UCEC 17273851 + 17273831 17273871 41 TTTGAAGACTTCGAGAGGAACAGCTTTGAGCAGTTCTGCAT TTTGAAGACTTCGAGAGGAACATCTTTGAGCAGTTCTGCAT < 41bp 1 0.114606058589553 1 0.0505989491939545 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17273851 chr19:17273853 nonsynonymous SNV 0.995 5 23 hm5C_associated_SNPs_44380 0 0 1 0 2 MYO9B chr19:17273932 5'GT 17273932 Upstream 80bp
chr12 51449982 51449982 1 + T G UCEC 51449969 + 51449949 51449989 41 CAATACATGATATCTTGGCTCTGAGAGAGTGTTTCTCTAAC CAATACATGATATCTTGGCTCTGAGAGAGTGTTGCTCTAAC < 41bp 1 0.573247117075848 1 0.357956230640411 experiment 0.853505765848305 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51449969 chr12:51449982 nonsynonymous SNV 0.977 4 34 hm5C_associated_SNPs_44381 0 0 1 0 2 LETMD1 chr12:51449927 3'AG 51449927 Downstream 56bp
chr12 51449982 51449982 1 + T G UCEC 51449969 + 51449949 51449989 41 CAATACATGATATCTTGGCTCTGAGAGAGTGTTTCTCTAAC CAATACATGATATCTTGGCTCTGAGAGAGTGTTGCTCTAAC < 41bp 1 0.573247117075848 1 0.357956230640411 experiment 0.853505765848305 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51449969 chr12:51449982 nonsynonymous SNV 0.977 4 34 hm5C_associated_SNPs_44381 0 0 1 0 2 LETMD1 chr12:51450028 5'GT 51450028 Upstream 47bp
chr2 54845322 54845322 1 + A G UCEC 54845324 + 54845304 54845344 41 GCCTCACTAAACTGTTGGACCCCGAAGGTAGGGACTCAAGG GCCTCACTAAACTGTTGGGCCCCGAAGGTAGGGACTCAAGG < 41bp 1 0.230749053386061 1 0.143860727548599 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54845324 chr2:54845322 nonsynonymous SNV 0.964 5 19 hm5C_associated_SNPs_44382 0 0 1 0 1 SPTBN1 chr2:54845330 5'GT 54845330 Upstream 9bp
chr2 54845322 54845322 1 + A G UCEC 54845325 + 54845305 54845345 41 CCTCACTAAACTGTTGGACCCCGAAGGTAGGGACTCAAGGG CCTCACTAAACTGTTGGGCCCCGAAGGTAGGGACTCAAGGG < 41bp 1 0.202771627667114 1 0.246159434318542 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54845325 chr2:54845322 nonsynonymous SNV 0.964 5 18 hm5C_associated_SNPs_44383 0 0 1 0 1 SPTBN1 chr2:54845330 5'GT 54845330 Upstream 9bp
chr2 54845322 54845322 1 + A G UCEC 54845326 + 54845306 54845346 41 CTCACTAAACTGTTGGACCCCGAAGGTAGGGACTCAAGGGA CTCACTAAACTGTTGGGCCCCGAAGGTAGGGACTCAAGGGA < 41bp 1 0.278130121455894 1 0.530791580677032 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54845326 chr2:54845322 nonsynonymous SNV 0.964 5 17 hm5C_associated_SNPs_44384 0 0 1 0 1 SPTBN1 chr2:54845330 5'GT 54845330 Upstream 9bp
chr11 35201888 35201888 1 + A G UCEC 35201875 + 35201855 35201895 41 CGGATCCACCCCAACTCCATCTGTGCAGCAAACAACACAGG CGGATCCACCCCAACTCCATCTGTGCAGCAAACGACACAGG < 41bp 1 0.375431655782876 1 0.346743702888489 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD44 ENSG00000026508 CDS Human protein_coding chr11:35201875 chr11:35201888 nonsynonymous SNV 0.388 0 34 hm5C_associated_SNPs_44397 0 0 1 0 2 CD44 chr11:35201821 3'AG 35201821 Downstream 68bp
chr11 35201888 35201888 1 + A G UCEC 35201875 + 35201855 35201895 41 CGGATCCACCCCAACTCCATCTGTGCAGCAAACAACACAGG CGGATCCACCCCAACTCCATCTGTGCAGCAAACGACACAGG < 41bp 1 0.375431655782876 1 0.346743702888489 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD44 ENSG00000026508 CDS Human protein_coding chr11:35201875 chr11:35201888 nonsynonymous SNV 0.388 0 34 hm5C_associated_SNPs_44397 0 0 1 0 2 CD44 chr11:35201954 5'GT 35201954 Upstream 67bp
chr11 35201888 35201888 1 + A G UCEC 35201902 + 35201882 35201922 41 GCAAACAACACAGGGGTGTACATCCTCACATCCAACACCTC GCAAACGACACAGGGGTGTACATCCTCACATCCAACACCTC < 41bp 1 0.154994451186717 1 0.147462874650955 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD44 ENSG00000026508 CDS Human protein_coding chr11:35201902 chr11:35201888 nonsynonymous SNV 0.388 0 7 hm5C_associated_SNPs_44398 0 0 1 0 2 CD44 chr11:35201821 3'AG 35201821 Downstream 68bp
chr11 35201888 35201888 1 + A G UCEC 35201902 + 35201882 35201922 41 GCAAACAACACAGGGGTGTACATCCTCACATCCAACACCTC GCAAACGACACAGGGGTGTACATCCTCACATCCAACACCTC < 41bp 1 0.154994451186717 1 0.147462874650955 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD44 ENSG00000026508 CDS Human protein_coding chr11:35201902 chr11:35201888 nonsynonymous SNV 0.388 0 7 hm5C_associated_SNPs_44398 0 0 1 0 2 CD44 chr11:35201954 5'GT 35201954 Upstream 67bp
chr5 37697813 37697813 1 + C T UCEC 37697804 + 37697784 37697824 41 GCTCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTC GCTCATGACTCGGGCACAGACACTTCTTGTGTGACTTTTTC < 41bp 1 0.335002559495842 1 0.0826710760593414 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697804 chr5:37697813 synonymous SNV . 0 30 hm5C_associated_SNPs_44402 0 0 0 2 2 WDR70 chr5:37697757 3'AG 37697757 Downstream 57bp
chr5 37697813 37697813 1 + C T UCEC 37697804 + 37697784 37697824 41 GCTCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTC GCTCATGACTCGGGCACAGACACTTCTTGTGTGACTTTTTC < 41bp 1 0.335002559495842 1 0.0826710760593414 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697804 chr5:37697813 synonymous SNV . 0 30 hm5C_associated_SNPs_44402 0 0 0 2 2 WDR70 chr5:37697856 5'GT 37697856 Upstream 44bp
chr5 37697813 37697813 1 + C T UCEC 37697806 + 37697786 37697826 41 TCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTCCT TCATGACTCGGGCACAGACACTTCTTGTGTGACTTTTTCCT < 41bp 1 0.245449835794637 1 0.149654179811478 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697806 chr5:37697813 synonymous SNV . 0 28 hm5C_associated_SNPs_44403 0 0 0 2 2 WDR70 chr5:37697757 3'AG 37697757 Downstream 57bp
chr5 37697813 37697813 1 + C T UCEC 37697806 + 37697786 37697826 41 TCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTCCT TCATGACTCGGGCACAGACACTTCTTGTGTGACTTTTTCCT < 41bp 1 0.245449835794637 1 0.149654179811478 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697806 chr5:37697813 synonymous SNV . 0 28 hm5C_associated_SNPs_44403 0 0 0 2 2 WDR70 chr5:37697856 5'GT 37697856 Upstream 44bp
chrX 123195667 123195667 1 + T C UCEC 123195669 + 123195649 123195689 41 GATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAAT GATTGAAATAATGCTTTGCACCATTAGACAAGCGGCTGAAT < 41bp 1 0.0802592264633086 1 0.0301941633224487 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123195669 chrX:123195667 synonymous SNV . 0 19 hm5C_associated_SNPs_44406 0 0 1 0 1 STAG2 chrX:123195621 3'AG 123195621 Downstream 47bp
chrX 123195667 123195667 1 + T C UCEC 123195670 + 123195650 123195690 41 ATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAATG ATTGAAATAATGCTTTGCACCATTAGACAAGCGGCTGAATG < 41bp 1 0.272846565348931 1 0.0646955370903015 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123195670 chrX:123195667 synonymous SNV . 0 18 hm5C_associated_SNPs_44407 0 0 1 0 1 STAG2 chrX:123195621 3'AG 123195621 Downstream 47bp
chr5 162869386 162869386 1 + G T UCEC 162869395 + 162869375 162869415 41 TACAGATAAATGGCAGAGATCTGACCTTCTGGCAAGAGCTT TACAGATAAATTGCAGAGATCTGACCTTCTGGCAAGAGCTT < 41bp 1 0.160488806406362 1 0.0488498210906982 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCNG1 ENSG00000113328 CDS Human protein_coding chr5:162869395 chr5:162869386 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_44408 0 0 1 1 1 CCNG1 chr5:162869380 3'AG 162869380 Downstream 7bp
chr19 33465002 33465002 1 + A G UCEC 33465022 + 33465002 33465042 41 ACCCGGATGAGTGAACAATACTTCCCAGCCCTACAGAAGTT GCCCGGATGAGTGAACAATACTTCCCAGCCCTACAGAAGTT < 41bp 1 0.169404125873596 1 0.139242351055145 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33465022 chr19:33465002 nonsynonymous SNV 0.558 3 1 hm5C_associated_SNPs_44409 0 0 1 0 1 FAAP24 chr19:33464966 3'AG 33464966 Downstream 37bp
chr19 41711899 41711899 1 + C A UCEC 41711910 + 41711890 41711930 41 TCCATCCTGCATGACCCCAACATCTTCAAGCACCCAGAAGA TCCATCCTGAATGACCCCAACATCTTCAAGCACCCAGAAGA < 41bp 1 0.0900786372301116 1 0.0617958605289459 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41711910 chr19:41711899 stopgain 0.003 1 10 hm5C_associated_SNPs_44410 0 0 0 0 1 CYP2S1 chr19:41711863 3'AG 41711863 Downstream 37bp
chr1 38484934 38484934 1 + T C UCEC 38484930 + 38484910 38484950 41 TGTCTTGAATTTTAGTTGAACAGTTTGATGTCGCAACTCAC TGTCTTGAATTTTAGTTGAACAGTCTGATGTCGCAACTCAC < 41bp 1 0.157707403270023 1 0.0698352754116058 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UTP11 ENSG00000183520 CDS Human protein_coding chr1:38484930 chr1:38484934 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_44411 0 0 1 0 1 UTP11 chr1:38484925 3'AG 38484925 Downstream 10bp
chr12 27835633 27835633 1 + T G UCEC 27835622 + 27835602 27835642 41 GGGTTGATGGTCGAATGCTACATTACATGACTGTTGTAAGT GGGTTGATGGTCGAATGCTACATTACATGACGGTTGTAAGT < 41bp 1 0.203110727718829 1 0.149397045373917 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27835622 chr12:27835633 synonymous SNV . 0 32 hm5C_associated_SNPs_44413 0 0 0 0 2 PPFIBP1 chr12:27835548 3'AG 27835548 Downstream 86bp
chr12 27835633 27835633 1 + T G UCEC 27835622 + 27835602 27835642 41 GGGTTGATGGTCGAATGCTACATTACATGACTGTTGTAAGT GGGTTGATGGTCGAATGCTACATTACATGACGGTTGTAAGT < 41bp 1 0.203110727718829 1 0.149397045373917 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27835622 chr12:27835633 synonymous SNV . 0 32 hm5C_associated_SNPs_44413 0 0 0 0 2 PPFIBP1 chr12:27835636 5'GT 27835636 Upstream 4bp
chr16 82891968 82891968 1 + T C UCEC 82891983 + 82891963 82892003 41 TCAGGTGCTGCTGCTAACATCTGCAGAAGATTTGGACTGCA TCAGGCGCTGCTGCTAACATCTGCAGAAGATTTGGACTGCA < 41bp 1 0.579049297316717 1 0.825625777244568 experiment 0.841901405366567 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:82891983 chr16:82891968 nonsynonymous SNV 0.998 2 6 hm5C_associated_SNPs_44414 0 0 0 0 1 CDH13 chr16:82891967 3'AG 82891967 Downstream 2bp
chr22 39125528 39125528 1 + C T UCEC 39125541 + 39125521 39125561 41 ATGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGA ATGCAGTTGACGAAAAAGGGCCCCCTGACGAAACGAGACGA < 41bp 1 0.0556682857353799 1 0.108709216117859 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125541 chr22:39125528 nonsynonymous SNV 0.971 1 8 hm5C_associated_SNPs_44415 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 62bp
chr22 39125528 39125528 1 + C T UCEC 39125542 + 39125522 39125562 41 TGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAG TGCAGTTGACGAAAAAGGGCCCCCTGACGAAACGAGACGAG < 41bp 1 0.0516013787768919 1 0.185302495956421 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125542 chr22:39125528 nonsynonymous SNV 0.971 1 7 hm5C_associated_SNPs_44416 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 62bp
chr22 39125528 39125528 1 + C T UCEC 39125543 + 39125523 39125563 41 GCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGG GCAGTTGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGG < 41bp 1 0.0291291298396811 1 0.193480223417282 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125543 chr22:39125528 nonsynonymous SNV 0.971 1 6 hm5C_associated_SNPs_44417 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 62bp
chr22 39125528 39125528 1 + C T UCEC 39125544 + 39125524 39125564 41 CAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGG CAGTTGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGG < 41bp 1 0.080893638117338 1 0.174072861671448 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125544 chr22:39125528 nonsynonymous SNV 0.971 1 5 hm5C_associated_SNPs_44418 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 62bp
chr22 39125528 39125528 1 + C T UCEC 39125545 + 39125525 39125565 41 AGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGGG AGTTGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGGG < 41bp 1 0.16245738275498 1 0.377568662166595 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125545 chr22:39125528 nonsynonymous SNV 0.971 1 4 hm5C_associated_SNPs_44419 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 62bp
chr16 22237232 22237232 1 + G T UCEC 22237252 + 22237232 22237272 41 GCAACCTAACAAAAAGTGAGCGGTATAGCTCCAGCGGGTCC TCAACCTAACAAAAAGTGAGCGGTATAGCTCCAGCGGGTCC < 41bp 1 0.381868262515599 1 0.553581058979034 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EEF2K ENSG00000103319 CDS Human protein_coding chr16:22237252 chr16:22237232 nonsynonymous SNV 0.998 1 1 hm5C_associated_SNPs_44420 0 0 1 0 1 EEF2K chr16:22237296 5'GT 22237296 Upstream 65bp
chr4 37857279 37857279 1 + T C UCEC 37857261 + 37857241 37857281 41 AGTAAAAGCAGCCAAATGATCACCTTCACCTTTGCTAATGG AGTAAAAGCAGCCAAATGATCACCTTCACCTTTGCTAACGG < 41bp 1 0.704698194164063 1 0.303858995437622 experiment 0.590603611671874 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PGM2 ENSG00000169299 CDS Human protein_coding chr4:37857261 chr4:37857279 synonymous SNV . 0 39 hm5C_associated_SNPs_44421 0 0 1 0 2 PGM2 chr4:37857229 3'AG 37857229 Downstream 51bp
chr4 37857279 37857279 1 + T C UCEC 37857261 + 37857241 37857281 41 AGTAAAAGCAGCCAAATGATCACCTTCACCTTTGCTAATGG AGTAAAAGCAGCCAAATGATCACCTTCACCTTTGCTAACGG < 41bp 1 0.704698194164063 1 0.303858995437622 experiment 0.590603611671874 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PGM2 ENSG00000169299 CDS Human protein_coding chr4:37857261 chr4:37857279 synonymous SNV . 0 39 hm5C_associated_SNPs_44421 0 0 1 0 2 PGM2 chr4:37857362 5'GT 37857362 Upstream 84bp
chr7 66489937 66489937 1 + C T UCEC 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGGATCATCAGAGCCTAAATTCCATT < 41bp 1 0.472691860656756 1 0.110724627971649 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489937 synonymous SNV . 0 20 hm5C_associated_SNPs_44425 0 0 0 0 2 TYW1 chr7:66489887 3'AG 66489887 Downstream 51bp
chr7 66489937 66489937 1 + C T UCEC 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGGATCATCAGAGCCTAAATTCCATT < 41bp 1 0.472691860656756 1 0.110724627971649 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489937 synonymous SNV . 0 20 hm5C_associated_SNPs_44425 0 0 0 0 2 TYW1 chr7:66490009 5'GT 66490009 Upstream 73bp
chr21 45725246 45725246 1 + T C UCEC 45725240 + 45725220 45725260 41 CAGGGTAGAGGTCGAGAGTCCTCTCGTGGGGGTCTCCATGT CAGGGTAGAGGTCGAGAGTCCTCTCGCGGGGGTCTCCATGT < 41bp 1 0.196322227038682 1 0.0775333344936371 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45725240 chr21:45725246 synonymous SNV . 0 27 hm5C_associated_SNPs_44426 0 0 0 0 1 PFKL chr21:45725300 5'GT 45725300 Upstream 55bp
chr3 25542789 25542789 1 + C A UCEC 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGATT < 41bp 1 0.21537272436118 1 0.0710446536540985 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542789 stopgain 1.000 1 39 hm5C_associated_SNPs_44427 0 0 1 0 1 RARB chr3:25542814 5'GT 25542814 Upstream 26bp
chr8 22862106 22862106 1 + A G UCEC 22862102 + 22862082 22862122 41 GCTGGCCACGCATGTGCCCACAGTATGGGCCATCGACCAAT GCTGGCCACGCATGTGCCCACAGTGTGGGCCATCGACCAAT < 41bp 1 0.566773852048427 1 0.0860329866409302 experiment 0.866452295903147 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22862102 chr8:22862106 synonymous SNV . 0 25 hm5C_associated_SNPs_44430 0 0 0 0 1 RHOBTB2 chr8:22862139 5'GT 22862139 Upstream 34bp
chr6 31602069 31602069 1 + A G UCEC 31602058 + 31602038 31602078 41 CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAG CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCGGGCCCTCAG < 41bp 1 0.506333500521137 1 0.275240898132324 experiment 0.987332998957727 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602058 chr6:31602069 synonymous SNV . 0 32 hm5C_associated_SNPs_44431 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 57bp
chr6 31602069 31602069 1 + A G UCEC 31602058 + 31602038 31602078 41 CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAG CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCGGGCCCTCAG < 41bp 1 0.506333500521137 1 0.275240898132324 experiment 0.987332998957727 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602058 chr6:31602069 synonymous SNV . 0 32 hm5C_associated_SNPs_44431 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 74bp
chr6 31602069 31602069 1 + A G UCEC 31602059 + 31602039 31602079 41 TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGG TGGATTCTTGGGCTCTAAGCCTGAGGGCCCGGGCCCTCAGG < 41bp 1 0.508767076827831 1 0.817206203937531 experiment 0.982465846344339 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602059 chr6:31602069 synonymous SNV . 0 31 hm5C_associated_SNPs_44432 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 57bp
chr6 31602069 31602069 1 + A G UCEC 31602059 + 31602039 31602079 41 TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGG TGGATTCTTGGGCTCTAAGCCTGAGGGCCCGGGCCCTCAGG < 41bp 1 0.508767076827831 1 0.817206203937531 experiment 0.982465846344339 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602059 chr6:31602069 synonymous SNV . 0 31 hm5C_associated_SNPs_44432 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 74bp
chr6 31602069 31602069 1 + A G UCEC 31602066 + 31602046 31602086 41 TTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTC TTGGGCTCTAAGCCTGAGGGCCCGGGCCCTCAGGCAGAGTC < 41bp 1 0.360259788178611 1 0.493091762065887 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602066 chr6:31602069 synonymous SNV . 0 24 hm5C_associated_SNPs_44433 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 57bp
chr6 31602069 31602069 1 + A G UCEC 31602066 + 31602046 31602086 41 TTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTC TTGGGCTCTAAGCCTGAGGGCCCGGGCCCTCAGGCAGAGTC < 41bp 1 0.360259788178611 1 0.493091762065887 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602066 chr6:31602069 synonymous SNV . 0 24 hm5C_associated_SNPs_44433 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 74bp
chr6 31602069 31602069 1 + A G UCEC 31602072 + 31602052 31602092 41 TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGA TCTAAGCCTGAGGGCCCGGGCCCTCAGGCAGAGTCCAGAGA < 41bp 1 0.137638330160281 1 0.0436141490936279 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602072 chr6:31602069 synonymous SNV . 0 18 hm5C_associated_SNPs_44434 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 57bp
chr6 31602069 31602069 1 + A G UCEC 31602072 + 31602052 31602092 41 TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGA TCTAAGCCTGAGGGCCCGGGCCCTCAGGCAGAGTCCAGAGA < 41bp 1 0.137638330160281 1 0.0436141490936279 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602072 chr6:31602069 synonymous SNV . 0 18 hm5C_associated_SNPs_44434 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 74bp
chr6 31602069 31602069 1 + A G UCEC 31602073 + 31602053 31602093 41 CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGAT CTAAGCCTGAGGGCCCGGGCCCTCAGGCAGAGTCCAGAGAT < 41bp 1 0.281277589257661 1 0.100325286388397 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602073 chr6:31602069 synonymous SNV . 0 17 hm5C_associated_SNPs_44435 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 57bp
chr6 31602069 31602069 1 + A G UCEC 31602073 + 31602053 31602093 41 CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGAT CTAAGCCTGAGGGCCCGGGCCCTCAGGCAGAGTCCAGAGAT < 41bp 1 0.281277589257661 1 0.100325286388397 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602073 chr6:31602069 synonymous SNV . 0 17 hm5C_associated_SNPs_44435 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 74bp
chr6 31602069 31602069 1 + A G UCEC 31602074 + 31602054 31602094 41 TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATA TAAGCCTGAGGGCCCGGGCCCTCAGGCAGAGTCCAGAGATA < 41bp 1 0.380609914488213 1 0.123026043176651 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602074 chr6:31602069 synonymous SNV . 0 16 hm5C_associated_SNPs_44436 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 57bp
chr6 31602069 31602069 1 + A G UCEC 31602074 + 31602054 31602094 41 TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATA TAAGCCTGAGGGCCCGGGCCCTCAGGCAGAGTCCAGAGATA < 41bp 1 0.380609914488213 1 0.123026043176651 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602074 chr6:31602069 synonymous SNV . 0 16 hm5C_associated_SNPs_44436 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 74bp
chr6 31602069 31602069 1 + A G UCEC 31602076 + 31602056 31602096 41 AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACA AGCCTGAGGGCCCGGGCCCTCAGGCAGAGTCCAGAGATACA < 41bp 1 0.466257789770779 1 0.832018733024597 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602076 chr6:31602069 synonymous SNV . 0 14 hm5C_associated_SNPs_44437 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 57bp
chr6 31602069 31602069 1 + A G UCEC 31602076 + 31602056 31602096 41 AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACA AGCCTGAGGGCCCGGGCCCTCAGGCAGAGTCCAGAGATACA < 41bp 1 0.466257789770779 1 0.832018733024597 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602076 chr6:31602069 synonymous SNV . 0 14 hm5C_associated_SNPs_44437 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 74bp
chr6 31602069 31602069 1 + A G UCEC 31602080 + 31602060 31602100 41 TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCA TGAGGGCCCGGGCCCTCAGGCAGAGTCCAGAGATACAGGCA < 41bp 1 0.449209213457156 1 0.824256181716919 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602080 chr6:31602069 synonymous SNV . 0 10 hm5C_associated_SNPs_44438 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 57bp
chr6 31602069 31602069 1 + A G UCEC 31602080 + 31602060 31602100 41 TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCA TGAGGGCCCGGGCCCTCAGGCAGAGTCCAGAGATACAGGCA < 41bp 1 0.449209213457156 1 0.824256181716919 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602080 chr6:31602069 synonymous SNV . 0 10 hm5C_associated_SNPs_44438 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 74bp
chr5 50058993 50058993 1 + T C UCEC 50059003 + 50058983 50059023 41 TGAACTATGATGGGGAACTGCACAAGCACCCACAACTGGAA TGAACTATGACGGGGAACTGCACAAGCACCCACAACTGGAA < 41bp 1 0.684679312245278 1 0.358957499265671 experiment 0.630641375509443 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PARP8 ENSG00000151883 CDS Human protein_coding chr5:50059003 chr5:50058993 synonymous SNV . 0 11 hm5C_associated_SNPs_44441 0 0 1 0 2 PARP8 chr5:50058982 3'AG 50058982 Downstream 12bp
chr5 50058993 50058993 1 + T C UCEC 50059003 + 50058983 50059023 41 TGAACTATGATGGGGAACTGCACAAGCACCCACAACTGGAA TGAACTATGACGGGGAACTGCACAAGCACCCACAACTGGAA < 41bp 1 0.684679312245278 1 0.358957499265671 experiment 0.630641375509443 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PARP8 ENSG00000151883 CDS Human protein_coding chr5:50059003 chr5:50058993 synonymous SNV . 0 11 hm5C_associated_SNPs_44441 0 0 1 0 2 PARP8 chr5:50059076 5'GT 50059076 Upstream 84bp
chr15 93528744 93528744 1 + G T UCEC 93528742 + 93528722 93528762 41 TCTCAGGCTCAGACAAATGACAGTGACTCTGACACTGAGTC TCTCAGGCTCAGACAAATGACATTGACTCTGACACTGAGTC < 41bp 1 0.0798740599310239 1 0.0223695933818817 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93528742 chr15:93528744 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_44442 0 0 1 0 1 CHD2 chr15:93528728 3'AG 93528728 Downstream 17bp
chr17 29683531 29683531 1 + C T UCEC 29683551 + 29683531 29683571 41 CAAGAAATGGAATCAGGGATCACAACACCCCCCAAAATGAG TAAGAAATGGAATCAGGGATCACAACACCCCCCAAAATGAG < 41bp 1 0.285015108331821 1 0.470875889062881 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29683551 chr17:29683531 stopgain 1.000 1 1 hm5C_associated_SNPs_44443 0 0 1 0 2 NF1 chr17:29683478 3'AG 29683478 Downstream 54bp
chr17 29683531 29683531 1 + C T UCEC 29683551 + 29683531 29683571 41 CAAGAAATGGAATCAGGGATCACAACACCCCCCAAAATGAG TAAGAAATGGAATCAGGGATCACAACACCCCCCAAAATGAG < 41bp 1 0.285015108331821 1 0.470875889062881 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29683551 chr17:29683531 stopgain 1.000 1 1 hm5C_associated_SNPs_44443 0 0 1 0 2 NF1 chr17:29683600 5'GT 29683600 Upstream 70bp
chr6 117859947 117859947 1 + A G UCEC 117859950 + 117859930 117859970 41 ACAGTAGCAACAACCACAAACCACGAGAGTGGCTGGAGATC ACAGTAGCAACAACCACGAACCACGAGAGTGGCTGGAGATC < 41bp 1 0.194926378303533 1 0.163222253322601 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117859950 chr6:117859947 nonsynonymous SNV 0.050 1 18 hm5C_associated_SNPs_44444 0 0 0 0 1 DCBLD1 chr6:117859998 5'GT 117859998 Upstream 52bp
chr1 151538654 151538654 1 + C T UCEC 151538645 + 151538625 151538665 41 TTTTCTTTGAACAGGTGGTGCTAGAAAAGCCAAATGGCTTT TTTTCTTTGAACAGGTGGTGCTAGAAAAGTCAAATGGCTTT < 41bp 1 0.541847320620979 1 0.17065155506134 experiment 0.916305358758043 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUFT1 ENSG00000143367 CDS Human protein_coding chr1:151538645 chr1:151538654 nonsynonymous SNV 0.998 0 30 hm5C_associated_SNPs_44445 0 0 1 0 2 TUFT1 chr1:151538639 3'AG 151538639 Downstream 16bp
chr1 151538654 151538654 1 + C T UCEC 151538645 + 151538625 151538665 41 TTTTCTTTGAACAGGTGGTGCTAGAAAAGCCAAATGGCTTT TTTTCTTTGAACAGGTGGTGCTAGAAAAGTCAAATGGCTTT < 41bp 1 0.541847320620979 1 0.17065155506134 experiment 0.916305358758043 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUFT1 ENSG00000143367 CDS Human protein_coding chr1:151538645 chr1:151538654 nonsynonymous SNV 0.998 0 30 hm5C_associated_SNPs_44445 0 0 1 0 2 TUFT1 chr1:151538704 5'GT 151538704 Upstream 51bp
chr10 17277849 17277849 1 + T C UCEC 17277858 + 17277838 17277878 41 TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG TTTATAGGATTCCTCTGCCTCTTCCAAACTTTTCCTCCCTG < 41bp 1 0.0838687607755544 1 0.647125363349915 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277858 chr10:17277849 nonsynonymous SNV 0.998 2 12 hm5C_associated_SNPs_44446 0 0 1 1 2 VIM chr10:17277845 3'AG 17277845 Downstream 5bp
chr10 17277849 17277849 1 + T C UCEC 17277858 + 17277838 17277878 41 TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG TTTATAGGATTCCTCTGCCTCTTCCAAACTTTTCCTCCCTG < 41bp 1 0.0838687607755544 1 0.647125363349915 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277858 chr10:17277849 nonsynonymous SNV 0.998 2 12 hm5C_associated_SNPs_44446 0 0 1 1 2 VIM chr10:17277888 5'GT 17277888 Upstream 40bp
chr3 38294331 38294331 1 + T C UCEC 38294312 + 38294292 38294332 41 TTTGTTTGGTTCTTAGGCATCTGGTGTCGAAGGCTCAGATA TTTGTTTGGTTCTTAGGCATCTGGTGTCGAAGGCTCAGACA < 41bp 1 0.596211624372551 1 0.448002398014069 experiment 0.807576751254899 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OXSR1 ENSG00000172939 CDS Human protein_coding chr3:38294312 chr3:38294331 synonymous SNV . 0 40 hm5C_associated_SNPs_44447 0 0 1 0 1 OXSR1 chr3:38294308 3'AG 38294308 Downstream 24bp
chr10 112361866 112361866 1 + A G UCEC 112361869 + 112361849 112361889 41 GTTAGATAGGGGTTACAAATCAATCATGGAACTGATGAATG GTTAGATAGGGGTTACAGATCAATCATGGAACTGATGAATG < 41bp 1 0.213378074679281 1 0.0926706194877625 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMC3 ENSG00000108055 CDS Human protein_coding chr10:112361869 chr10:112361866 nonsynonymous SNV 0.954 2 18 hm5C_associated_SNPs_44449 0 0 1 0 1 SMC3 chr10:112361936 5'GT 112361936 Upstream 71bp
chr6 42975955 42975955 1 + G A UCEC 42975958 + 42975938 42975978 41 GGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGAG GGTTCATCTACGAGACGAAGCATCACAACGGGATTGCTGAG < 41bp 1 0.397253467756598 1 0.0768393278121948 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975958 chr6:42975955 nonsynonymous SNV 0.959 4 18 hm5C_associated_SNPs_44450 0 0 1 0 2 PPP2R5D chr6:42975939 3'AG 42975939 Downstream 17bp
chr6 42975955 42975955 1 + G A UCEC 42975958 + 42975938 42975978 41 GGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGAG GGTTCATCTACGAGACGAAGCATCACAACGGGATTGCTGAG < 41bp 1 0.397253467756598 1 0.0768393278121948 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975958 chr6:42975955 nonsynonymous SNV 0.959 4 18 hm5C_associated_SNPs_44450 0 0 1 0 2 PPP2R5D chr6:42975998 5'GT 42975998 Upstream 44bp
chr2 228162512 228162512 1 + C A UCEC 228162527 + 228162507 228162547 41 GTCTGCCCGGTGCAATTATCCCTGGCCAGACAGGAAATCGT GTCTGACCGGTGCAATTATCCCTGGCCAGACAGGAAATCGT < 41bp 1 0.173240080070546 1 0.222166538238525 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228162527 chr2:228162512 nonsynonymous SNV 0.389 4 6 hm5C_associated_SNPs_44451 0 0 0 0 1 COL4A3 chr2:228162575 5'GT 228162575 Upstream 64bp
chr20 1902316 1902316 1 + G A UCEC 1902319 + 1902299 1902339 41 ACGTCACCTTGCAGGGGGACCCTCTTCGTGGGACTGCCAAC ACGTCACCTTGCAGGGGAACCCTCTTCGTGGGACTGCCAAC < 41bp 1 0.105600632966842 1 0.0221747756004333 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1902319 chr20:1902316 nonsynonymous SNV 0.022 0 18 hm5C_associated_SNPs_44452 0 0 0 0 1 SIRPA chr20:1902358 5'GT 1902358 Upstream 43bp
chr1 22332246 22332246 1 + C A UCEC 22332227 + 22332207 22332247 41 GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCT GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGAT < 41bp 1 0.529291891734113 1 0.0726851224899292 experiment 0.941416216531775 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332227 chr1:22332246 nonsynonymous SNV 0.000 1 40 hm5C_associated_SNPs_44453 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 92bp
chr1 22332246 22332246 1 + C A UCEC 22332227 + 22332207 22332247 41 GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCT GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGAT < 41bp 1 0.529291891734113 1 0.0726851224899292 experiment 0.941416216531775 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332227 chr1:22332246 nonsynonymous SNV 0.000 1 40 hm5C_associated_SNPs_44453 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 44bp
chr1 22332246 22332246 1 + C A UCEC 22332228 + 22332208 22332248 41 AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTG AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGATG < 41bp 1 0.108223013892647 1 0.0238616466522217 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332228 chr1:22332246 nonsynonymous SNV 0.000 1 39 hm5C_associated_SNPs_44454 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 92bp
chr1 22332246 22332246 1 + C A UCEC 22332228 + 22332208 22332248 41 AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTG AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGATG < 41bp 1 0.108223013892647 1 0.0238616466522217 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332228 chr1:22332246 nonsynonymous SNV 0.000 1 39 hm5C_associated_SNPs_44454 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 44bp
chr1 22332246 22332246 1 + C A UCEC 22332229 + 22332209 22332249 41 GGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGT GGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGATGT < 41bp 1 0.0713132559119318 1 0.0831275582313538 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332229 chr1:22332246 nonsynonymous SNV 0.000 1 38 hm5C_associated_SNPs_44455 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 92bp
chr1 22332246 22332246 1 + C A UCEC 22332229 + 22332209 22332249 41 GGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGT GGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGATGT < 41bp 1 0.0713132559119318 1 0.0831275582313538 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332229 chr1:22332246 nonsynonymous SNV 0.000 1 38 hm5C_associated_SNPs_44455 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 44bp
chr1 22332246 22332246 1 + C A UCEC 22332230 + 22332210 22332250 41 GGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTT GGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGATGTT < 41bp 1 0.40649654088153 1 0.140416264533997 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332230 chr1:22332246 nonsynonymous SNV 0.000 1 37 hm5C_associated_SNPs_44456 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 92bp
chr1 22332246 22332246 1 + C A UCEC 22332230 + 22332210 22332250 41 GGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTT GGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGATGTT < 41bp 1 0.40649654088153 1 0.140416264533997 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332230 chr1:22332246 nonsynonymous SNV 0.000 1 37 hm5C_associated_SNPs_44456 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 44bp
chr1 22332246 22332246 1 + C A UCEC 22332233 + 22332213 22332253 41 CCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGT CCCGAGCAGGTGATCCCCATCAACTCTGAGGAGATGTTTGT < 41bp 1 0.398552506503334 1 0.689794421195984 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332233 chr1:22332246 nonsynonymous SNV 0.000 1 34 hm5C_associated_SNPs_44457 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 92bp
chr1 22332246 22332246 1 + C A UCEC 22332233 + 22332213 22332253 41 CCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGT CCCGAGCAGGTGATCCCCATCAACTCTGAGGAGATGTTTGT < 41bp 1 0.398552506503334 1 0.689794421195984 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332233 chr1:22332246 nonsynonymous SNV 0.000 1 34 hm5C_associated_SNPs_44457 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 44bp
chr1 22332246 22332246 1 + C A UCEC 22332236 + 22332216 22332256 41 GAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGTGCA GAGCAGGTGATCCCCATCAACTCTGAGGAGATGTTTGTGCA < 41bp 1 0.591894070050111 1 0.47909414768219 experiment 0.816211859899777 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332236 chr1:22332246 nonsynonymous SNV 0.000 1 31 hm5C_associated_SNPs_44458 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 92bp
chr1 22332246 22332246 1 + C A UCEC 22332236 + 22332216 22332256 41 GAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGTGCA GAGCAGGTGATCCCCATCAACTCTGAGGAGATGTTTGTGCA < 41bp 1 0.591894070050111 1 0.47909414768219 experiment 0.816211859899777 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332236 chr1:22332246 nonsynonymous SNV 0.000 1 31 hm5C_associated_SNPs_44458 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 44bp
chr1 22332246 22332246 1 + C A UCEC 22332255 + 22332235 22332275 41 ACTCTGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCG ACTCTGAGGAGATGTTTGTGCATCCACTCTGGAACCGCTCG < 41bp 1 0.210908415250285 1 0.328152775764465 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332255 chr1:22332246 nonsynonymous SNV 0.000 1 12 hm5C_associated_SNPs_44459 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 92bp
chr1 22332246 22332246 1 + C A UCEC 22332255 + 22332235 22332275 41 ACTCTGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCG ACTCTGAGGAGATGTTTGTGCATCCACTCTGGAACCGCTCG < 41bp 1 0.210908415250285 1 0.328152775764465 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332255 chr1:22332246 nonsynonymous SNV 0.000 1 12 hm5C_associated_SNPs_44459 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 44bp
chr1 22332246 22332246 1 + C A UCEC 22332258 + 22332238 22332278 41 CTGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGT CTGAGGAGATGTTTGTGCATCCACTCTGGAACCGCTCGTGT < 41bp 1 0.253972831154546 1 0.0778161585330963 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332258 chr1:22332246 nonsynonymous SNV 0.000 1 9 hm5C_associated_SNPs_44460 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 92bp
chr1 22332246 22332246 1 + C A UCEC 22332258 + 22332238 22332278 41 CTGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGT CTGAGGAGATGTTTGTGCATCCACTCTGGAACCGCTCGTGT < 41bp 1 0.253972831154546 1 0.0778161585330963 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332258 chr1:22332246 nonsynonymous SNV 0.000 1 9 hm5C_associated_SNPs_44460 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 44bp
chr1 22332246 22332246 1 + C A UCEC 22332259 + 22332239 22332279 41 TGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGTG TGAGGAGATGTTTGTGCATCCACTCTGGAACCGCTCGTGTG < 41bp 1 0.367715561287267 1 0.0775362551212311 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332259 chr1:22332246 nonsynonymous SNV 0.000 1 8 hm5C_associated_SNPs_44461 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 92bp
chr1 22332246 22332246 1 + C A UCEC 22332259 + 22332239 22332279 41 TGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGTG TGAGGAGATGTTTGTGCATCCACTCTGGAACCGCTCGTGTG < 41bp 1 0.367715561287267 1 0.0775362551212311 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332259 chr1:22332246 nonsynonymous SNV 0.000 1 8 hm5C_associated_SNPs_44461 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 44bp
chr1 22332246 22332246 1 + C A UCEC 22332261 + 22332241 22332281 41 AGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG AGGAGATGTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG < 41bp 1 0.614282692832475 1 0.144934415817261 experiment 0.771434614335049 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332261 chr1:22332246 nonsynonymous SNV 0.000 1 6 hm5C_associated_SNPs_44462 0 0 0 0 2 CELA3A chr1:22332155 3'AG 22332155 Downstream 92bp
chr1 22332246 22332246 1 + C A UCEC 22332261 + 22332241 22332281 41 AGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG AGGAGATGTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG < 41bp 1 0.614282692832475 1 0.144934415817261 experiment 0.771434614335049 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332261 chr1:22332246 nonsynonymous SNV 0.000 1 6 hm5C_associated_SNPs_44462 0 0 0 0 2 CELA3A chr1:22332289 5'GT 22332289 Upstream 44bp
chr14 89075645 89075645 1 + T C UCEC 89075656 + 89075636 89075676 41 GAAAAATGTTTGTTTGTTCACCCAAATTGTAAATATGATGC GAAAAATGTCTGTTTGTTCACCCAAATTGTAAATATGATGC < 41bp 1 0.467443342334754 1 0.0506678223609924 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89075656 chr14:89075645 synonymous SNV . 0 10 hm5C_associated_SNPs_44463 0 0 1 0 1 ZC3H14 chr14:89075611 3'AG 89075611 Downstream 35bp
chr6 30547710 30547710 1 + C T UCEC 30547729 + 30547709 30547749 41 CCGTATCTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAG CTGTATCTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAG < 41bp 1 0.0653218577746449 1 0.0978022813796997 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30547729 chr6:30547710 synonymous SNV . 0 2 hm5C_associated_SNPs_44464 0 0 1 0 2 ABCF1 chr6:30547708 3'AG 30547708 Downstream 3bp
chr6 30547710 30547710 1 + C T UCEC 30547729 + 30547709 30547749 41 CCGTATCTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAG CTGTATCTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAG < 41bp 1 0.0653218577746449 1 0.0978022813796997 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30547729 chr6:30547710 synonymous SNV . 0 2 hm5C_associated_SNPs_44464 0 0 1 0 2 ABCF1 chr6:30547782 5'GT 30547782 Upstream 73bp
chr13 111154091 111154091 1 + A G UCEC 111154071 + 111154051 111154091 41 GGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGGCA GGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGGCG < 41bp 1 0.00785422214523079 1 0.371289789676666 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111154071 chr13:111154091 synonymous SNV . 0 41 hm5C_associated_SNPs_44465 0 0 0 0 2 COL4A2 chr13:111154015 3'AG 111154015 Downstream 77bp
chr13 111154091 111154091 1 + A G UCEC 111154071 + 111154051 111154091 41 GGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGGCA GGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGGCG < 41bp 1 0.00785422214523079 1 0.371289789676666 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111154071 chr13:111154091 synonymous SNV . 0 41 hm5C_associated_SNPs_44465 0 0 0 0 2 COL4A2 chr13:111154131 5'GT 111154131 Upstream 41bp
chr20 42089371 42089371 1 + C T UCEC 42089358 + 42089338 42089378 41 TCCAGTTCCAGGTCGCGGAGCAAAGGTCGATCACGTTCTCG TCCAGTTCCAGGTCGCGGAGCAAAGGTCGATCATGTTCTCG < 41bp 1 0.450620460442912 1 0.320768713951111 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089358 chr20:42089371 nonsynonymous SNV 0.999 4 34 hm5C_associated_SNPs_44466 0 0 1 0 1 SRSF6 chr20:42089343 3'AG 42089343 Downstream 29bp
chr4 8284212 8284212 1 + A G UCEC 8284228 + 8284208 8284248 41 GCTGACGTGGTGGAGAAGATCGCACCAGCCGTGGTCCACAT GCTGGCGTGGTGGAGAAGATCGCACCAGCCGTGGTCCACAT < 41bp 1 0.62906567782043 1 0.291528761386871 experiment 0.74186864435914 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8284228 chr4:8284212 nonsynonymous SNV 0.497 5 5 hm5C_associated_SNPs_44467 0 0 0 0 2 HTRA3 chr4:8284164 3'AG 8284164 Downstream 49bp
chr4 8284212 8284212 1 + A G UCEC 8284228 + 8284208 8284248 41 GCTGACGTGGTGGAGAAGATCGCACCAGCCGTGGTCCACAT GCTGGCGTGGTGGAGAAGATCGCACCAGCCGTGGTCCACAT < 41bp 1 0.62906567782043 1 0.291528761386871 experiment 0.74186864435914 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8284228 chr4:8284212 nonsynonymous SNV 0.497 5 5 hm5C_associated_SNPs_44467 0 0 0 0 2 HTRA3 chr4:8284263 5'GT 8284263 Upstream 52bp
chrX 148628308 148628308 1 + T G UCEC 148628325 + 148628305 148628345 41 ACTTTGCAATGCCCCGAAGACTTAACTCCCGATGAGGTTGT ACTGTGCAATGCCCCGAAGACTTAACTCCCGATGAGGTTGT < 41bp 1 0.382073763581791 1 0.191144317388535 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CXorf40A ENSG00000197620 CDS Human protein_coding chrX:148628325 chrX:148628308 nonsynonymous SNV 0.197 1 4 hm5C_associated_SNPs_44472 0 0 0 0 1 CXorf40A chrX:148628285 3'AG 148628285 Downstream 24bp
chr1 198233295 198233295 1 + T C UCEC 198233296 + 198233276 198233316 41 ATAAAATATTATGCATCATTCATTGAAGATAATGAACTAAA ATAAAATATTATGCATCATCCATTGAAGATAATGAACTAAA < 41bp 1 0.0949438224529873 1 0.439428567886353 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233296 chr1:198233295 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_44473 0 0 1 0 2 NEK7 chr1:198233255 3'AG 198233255 Downstream 41bp
chr1 198233295 198233295 1 + T C UCEC 198233296 + 198233276 198233316 41 ATAAAATATTATGCATCATTCATTGAAGATAATGAACTAAA ATAAAATATTATGCATCATCCATTGAAGATAATGAACTAAA < 41bp 1 0.0949438224529873 1 0.439428567886353 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233296 chr1:198233295 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_44473 0 0 1 0 2 NEK7 chr1:198233365 5'GT 198233365 Upstream 71bp
chr14 70235555 70235555 1 + A G UCEC 70235540 + 70235520 70235560 41 CTATTGAACATGCTAGGGCTCGGTCACGAGGTGGAAGAGGT CTATTGAACATGCTAGGGCTCGGTCACGAGGTGGAGGAGGT < 41bp 1 0.182081773885974 1 0.255148589611053 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRSF5 ENSG00000100650 CDS Human protein_coding chr14:70235540 chr14:70235555 nonsynonymous SNV 1.000 0 36 hm5C_associated_SNPs_44474 0 0 1 0 1 SRSF5 chr14:70235613 5'GT 70235613 Upstream 59bp
chr20 32665012 32665012 1 + C T UCEC 32664995 + 32664975 32665015 41 GCCTGCCCCAGGGGGAAGCACGGACCCGAGACGACGGCGAT GCCTGCCCCAGGGGGAAGCACGGACCCGAGACGACGGTGAT < 41bp 1 0.387177096645043 1 0.72720742225647 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32664995 chr20:32665012 synonymous SNV . 0 38 hm5C_associated_SNPs_44475 0 0 1 0 1 RALY chr20:32665051 5'GT 32665051 Upstream 40bp
chr20 32665012 32665012 1 + C T UCEC 32664999 + 32664979 32665019 41 GCCCCAGGGGGAAGCACGGACCCGAGACGACGGCGATGAGG GCCCCAGGGGGAAGCACGGACCCGAGACGACGGTGATGAGG < 41bp 1 0.776788029387701 1 0.503162741661072 experiment 0.446423941224598 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32664999 chr20:32665012 synonymous SNV . 0 34 hm5C_associated_SNPs_44476 0 0 1 0 1 RALY chr20:32665051 5'GT 32665051 Upstream 40bp
chr20 32665012 32665012 1 + C T UCEC 32665000 + 32664980 32665020 41 CCCCAGGGGGAAGCACGGACCCGAGACGACGGCGATGAGGA CCCCAGGGGGAAGCACGGACCCGAGACGACGGTGATGAGGA < 41bp 1 0.352804870305256 1 0.583639800548553 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32665000 chr20:32665012 synonymous SNV . 0 33 hm5C_associated_SNPs_44477 0 0 1 0 1 RALY chr20:32665051 5'GT 32665051 Upstream 40bp
chr20 32665012 32665012 1 + C T UCEC 32665025 + 32665005 32665045 41 ACGACGGCGATGAGGAAGGGCTCCTGACACACAGCGAGGAA ACGACGGTGATGAGGAAGGGCTCCTGACACACAGCGAGGAA < 41bp 1 0.579881519104342 1 0.19310387969017 experiment 0.840236961791317 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32665025 chr20:32665012 synonymous SNV . 0 8 hm5C_associated_SNPs_44478 0 0 1 0 1 RALY chr20:32665051 5'GT 32665051 Upstream 40bp
chr20 32665012 32665012 1 + C T UCEC 32665027 + 32665007 32665047 41 GACGGCGATGAGGAAGGGCTCCTGACACACAGCGAGGAAGA GACGGTGATGAGGAAGGGCTCCTGACACACAGCGAGGAAGA < 41bp 1 0.542347618782042 1 0.109713464975357 experiment 0.915304762435917 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32665027 chr20:32665012 synonymous SNV . 0 6 hm5C_associated_SNPs_44479 0 0 1 0 1 RALY chr20:32665051 5'GT 32665051 Upstream 40bp
chr15 22962526 22962526 1 + T C UCEC 22962534 + 22962514 22962554 41 GCTACGAGACGCTGCTGAAGCAGAGGCATGTGCAGGTGAGC GCTACGAGACGCCGCTGAAGCAGAGGCATGTGCAGGTGAGC < 41bp 1 0.704260573575885 1 0.833437442779541 experiment 0.59147885284823 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22962534 chr15:22962526 nonsynonymous SNV . 0 13 hm5C_associated_SNPs_44480 0 0 1 0 2 CYFIP1 chr15:22962440 3'AG 22962440 Downstream 87bp
chr15 22962526 22962526 1 + T C UCEC 22962534 + 22962514 22962554 41 GCTACGAGACGCTGCTGAAGCAGAGGCATGTGCAGGTGAGC GCTACGAGACGCCGCTGAAGCAGAGGCATGTGCAGGTGAGC < 41bp 1 0.704260573575885 1 0.833437442779541 experiment 0.59147885284823 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22962534 chr15:22962526 nonsynonymous SNV . 0 13 hm5C_associated_SNPs_44480 0 0 1 0 2 CYFIP1 chr15:22962548 5'GT 22962548 Upstream 23bp
chr16 4498839 4498839 1 + C T UCEC 4498845 + 4498825 4498865 41 TCCACATCAAGATACGAGTTCCAAAGTAAGTGCCCCCTAGG TCCACATCAAGATATGAGTTCCAAAGTAAGTGCCCCCTAGG < 41bp 1 0.378657677609107 1 0.290245622396469 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJA3 ENSG00000103423 CDS Human protein_coding chr16:4498845 chr16:4498839 stopgain 0.985 1 15 hm5C_associated_SNPs_44481 0 0 1 0 1 DNAJA3 chr16:4498849 5'GT 4498849 Upstream 11bp
chr16 67315516 67315516 1 + C T UCEC 67315518 + 67315498 67315538 41 TGCTGCTAGTGGGAAGCACGCTGCTGAAGGAAGTGCCTTCC TGCTGCTAGTGGGAAGCATGCTGCTGAAGGAAGTGCCTTCC < 41bp 1 0.517089169830638 1 0.16764509677887 experiment 0.965821660338724 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67315518 chr16:67315516 nonsynonymous SNV 0.288 0 19 hm5C_associated_SNPs_44482 0 0 1 0 2 PLEKHG4 chr16:67315470 3'AG 67315470 Downstream 47bp
chr16 67315516 67315516 1 + C T UCEC 67315518 + 67315498 67315538 41 TGCTGCTAGTGGGAAGCACGCTGCTGAAGGAAGTGCCTTCC TGCTGCTAGTGGGAAGCATGCTGCTGAAGGAAGTGCCTTCC < 41bp 1 0.517089169830638 1 0.16764509677887 experiment 0.965821660338724 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67315518 chr16:67315516 nonsynonymous SNV 0.288 0 19 hm5C_associated_SNPs_44482 0 0 1 0 2 PLEKHG4 chr16:67315547 5'GT 67315547 Upstream 32bp
chr17 7214407 7214407 1 + T C UCEC 7214415 + 7214395 7214435 41 CAACTCATAATATGGATGTCCCCAACATCAAAAGGAATGAC CAACTCATAATACGGATGTCCCCAACATCAAAAGGAATGAC < 41bp 1 0.24333714949291 1 0.112840831279755 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214415 chr17:7214407 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_44483 0 0 1 0 2 EIF5A chr17:7214337 3'AG 7214337 Downstream 71bp
chr17 7214407 7214407 1 + T C UCEC 7214415 + 7214395 7214435 41 CAACTCATAATATGGATGTCCCCAACATCAAAAGGAATGAC CAACTCATAATACGGATGTCCCCAACATCAAAAGGAATGAC < 41bp 1 0.24333714949291 1 0.112840831279755 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214415 chr17:7214407 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_44483 0 0 1 0 2 EIF5A chr17:7214441 5'GT 7214441 Upstream 35bp
chr17 7214407 7214407 1 + T C UCEC 7214416 + 7214396 7214436 41 AACTCATAATATGGATGTCCCCAACATCAAAAGGAATGACT AACTCATAATACGGATGTCCCCAACATCAAAAGGAATGACT < 41bp 1 0.0603587523123711 1 0.151366025209427 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214416 chr17:7214407 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_44484 0 0 1 0 2 EIF5A chr17:7214337 3'AG 7214337 Downstream 71bp
chr17 7214407 7214407 1 + T C UCEC 7214416 + 7214396 7214436 41 AACTCATAATATGGATGTCCCCAACATCAAAAGGAATGACT AACTCATAATACGGATGTCCCCAACATCAAAAGGAATGACT < 41bp 1 0.0603587523123711 1 0.151366025209427 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214416 chr17:7214407 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_44484 0 0 1 0 2 EIF5A chr17:7214441 5'GT 7214441 Upstream 35bp
chrX 153696520 153696520 1 + G A UCEC 153696529 + 153696509 153696549 41 ACGCCGTGCGCGTGCTCTTCCCGGGCATCGAGGCCCACCCG ACGCCGTGCGCATGCTCTTCCCGGGCATCGAGGCCCACCCG < 41bp 1 0.545288064937401 1 0.865538358688354 experiment 0.909423870125198 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696529 chrX:153696520 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_44485 0 0 0 0 2 PLXNA3 chrX:153696425 3'AG 153696425 Downstream 96bp
chrX 153696520 153696520 1 + G A UCEC 153696529 + 153696509 153696549 41 ACGCCGTGCGCGTGCTCTTCCCGGGCATCGAGGCCCACCCG ACGCCGTGCGCATGCTCTTCCCGGGCATCGAGGCCCACCCG < 41bp 1 0.545288064937401 1 0.865538358688354 experiment 0.909423870125198 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696529 chrX:153696520 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_44485 0 0 0 0 2 PLXNA3 chrX:153696567 5'GT 153696567 Upstream 48bp
chrX 153696520 153696520 1 + G A UCEC 153696537 + 153696517 153696557 41 CGCGTGCTCTTCCCGGGCATCGAGGCCCACCCGGTGCTCAA CGCATGCTCTTCCCGGGCATCGAGGCCCACCCGGTGCTCAA < 41bp 1 0.634750823578127 1 0.948688387870789 experiment 0.730498352843747 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696537 chrX:153696520 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_44486 0 0 0 0 2 PLXNA3 chrX:153696425 3'AG 153696425 Downstream 96bp
chrX 153696520 153696520 1 + G A UCEC 153696537 + 153696517 153696557 41 CGCGTGCTCTTCCCGGGCATCGAGGCCCACCCGGTGCTCAA CGCATGCTCTTCCCGGGCATCGAGGCCCACCCGGTGCTCAA < 41bp 1 0.634750823578127 1 0.948688387870789 experiment 0.730498352843747 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696537 chrX:153696520 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_44486 0 0 0 0 2 PLXNA3 chrX:153696567 5'GT 153696567 Upstream 48bp
chr2 170804141 170804141 1 + T C UCEC 170804126 + 170804106 170804146 41 TTAGTGTCAAACATGCGACACTTTATAAACTATGTTAGAGT TTAGTGTCAAACATGCGACACTTTATAAACTATGTCAGAGT < 41bp 1 0.0843020984404648 1 0.0685591399669647 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBR3 ENSG00000144357 CDS Human protein_coding chr2:170804126 chr2:170804141 synonymous SNV . 0 36 hm5C_associated_SNPs_44487 0 0 1 0 2 UBR3 chr2:170804052 3'AG 170804052 Downstream 90bp
chr2 170804141 170804141 1 + T C UCEC 170804126 + 170804106 170804146 41 TTAGTGTCAAACATGCGACACTTTATAAACTATGTTAGAGT TTAGTGTCAAACATGCGACACTTTATAAACTATGTCAGAGT < 41bp 1 0.0843020984404648 1 0.0685591399669647 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBR3 ENSG00000144357 CDS Human protein_coding chr2:170804126 chr2:170804141 synonymous SNV . 0 36 hm5C_associated_SNPs_44487 0 0 1 0 2 UBR3 chr2:170804225 5'GT 170804225 Upstream 85bp
chrX 70510550 70510550 1 + A G UCEC 70510542 + 70510522 70510562 41 AAAACCATACTCCAAGAAAGCATCATCAACATCACCACCAG AAAACCATACTCCAAGAAAGCATCATCAGCATCACCACCAG < 41bp 1 0.545287033387371 1 0.108000129461288 experiment 0.909425933225258 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70510542 chrX:70510550 synonymous SNV . 0 29 hm5C_associated_SNPs_44488 0 0 1 0 1 NONO chrX:70510641 5'GT 70510641 Upstream 92bp
chrX 51641240 51641240 1 + C A UCEC 51641235 + 51641215 51641255 41 AAGACACACCCAAGCTCGGTCTCCTCTTGGTGATTCTGGGT AAGACACACCCAAGCTCGGTCTCCTATTGGTGATTCTGGGT < 41bp 1 0.219308299982675 1 0.574397444725037 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51641235 chrX:51641240 synonymous SNV . 0 26 hm5C_associated_SNPs_44489 0 0 1 0 1 MAGED1 chrX:51641210 3'AG 51641210 Downstream 31bp
chr7 72396967 72396967 1 + T C UCEC 72396980 + 72396960 72397000 41 AGCCCAGTGACTGTGAGGATCGCCCCTCCTGACAGAAGATT AGCCCAGCGACTGTGAGGATCGCCCCTCCTGACAGAAGATT < 41bp 1 0.122120123672815 1 0.089171439409256 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control POM121 ENSG00000196313 CDS Human protein_coding chr7:72396980 chr7:72396967 nonsynonymous SNV 0.984 1 8 hm5C_associated_SNPs_44490 0 0 0 0 1 POM121 chr7:72397015 5'GT 72397015 Upstream 49bp
chr12 112321488 112321488 1 + G A UCEC 112321470 + 112321450 112321490 41 CTCCAAACACCACAGCCGGACTATCCCAAAGGATATGCGAA CTCCAAACACCACAGCCGGACTATCCCAAAGGATATGCAAA < 41bp 1 0.0332164191573055 1 0.060117244720459 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPKAPK5 ENSG00000089022 CDS Human protein_coding chr12:112321470 chr12:112321488 nonsynonymous SNV 0.997 3 39 hm5C_associated_SNPs_44491 0 0 1 0 1 MAPKAPK5 chr12:112321572 5'GT 112321572 Upstream 85bp
chr2 102472581 102472581 1 + G T UCEC 102472562 + 102472542 102472582 41 AAGAAGAAGAGGAGAGGAGACGGGCAGAAGAAGAAAAGAGG AAGAAGAAGAGGAGAGGAGACGGGCAGAAGAAGAAAAGATG < 41bp 1 0.567048662330638 1 0.66192889213562 experiment 0.865902675338723 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102472562 chr2:102472581 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_44494 0 0 1 0 1 MAP4K4 chr2:102472600 5'GT 102472600 Upstream 20bp
chr2 102472581 102472581 1 + G T UCEC 102472566 + 102472546 102472586 41 AGAAGAGGAGAGGAGACGGGCAGAAGAAGAAAAGAGGAGAG AGAAGAGGAGAGGAGACGGGCAGAAGAAGAAAAGATGAGAG < 41bp 1 0.674726375984026 1 0.569165825843811 experiment 0.650547248031947 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102472566 chr2:102472581 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_44495 0 0 1 0 1 MAP4K4 chr2:102472600 5'GT 102472600 Upstream 20bp
chr8 145065430 145065430 1 + C T UCEC 145065439 + 145065419 145065459 41 TCTGGGGACAACTATCCTCCCCCCAACCCTGGATATCCGGG TCTGGGGACAATTATCCTCCCCCCAACCCTGGATATCCGGG < 41bp 1 0.343806387555366 1 0.354492425918579 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065439 chr8:145065430 synonymous SNV . 0 12 hm5C_associated_SNPs_44496 0 0 1 0 1 GRINA chr8:145065368 3'AG 145065368 Downstream 63bp
chr17 691347 691347 1 + C T UCEC 691367 + 691347 691387 41 CTGCAGCAAAGTGTTACTCACCAAAGGTAAGGACATCAAAG TTGCAGCAAAGTGTTACTCACCAAAGGTAAGGACATCAAAG < 41bp 1 0.354143864423848 1 0.17761766910553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRM3 ENSG00000171861 CDS Human protein_coding chr17:691367 chr17:691347 synonymous SNV . 0 1 hm5C_associated_SNPs_44497 0 0 0 0 1 MRM3 chr17:691372 5'GT 691372 Upstream 26bp
chr17 30374792 30374792 1 + C A UCEC 30374780 + 30374760 30374800 41 AGTCTCTTCTTTTCTGACAGCTGAAGAAGCATCTGTAGGGA AGTCTCTTCTTTTCTGACAGCTGAAGAAGCATATGTAGGGA < 41bp 1 0.474210091664584 1 0.746246814727783 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRRC37B ENSG00000185158 CDS Human protein_coding chr17:30374780 chr17:30374792 nonsynonymous SNV 0.011 3 33 hm5C_associated_SNPs_44498 0 0 0 0 1 LRRC37B chr17:30374780 3'AG 30374780 Downstream 13bp
chr17 78022545 78022545 1 + T G UCEC 78022532 + 78022512 78022552 41 GGAAGCAGAAGACGAAGGGTCCCAGCTGGTGGTTTTGGACC GGAAGCAGAAGACGAAGGGTCCCAGCTGGTGGTGTTGGACC < 41bp 1 0.228666807709916 1 0.372912228107452 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78022532 chr17:78022545 synonymous SNV . 0 34 hm5C_associated_SNPs_44499 0 0 1 0 1 CCDC40 chr17:78022560 5'GT 78022560 Upstream 16bp
chr5 7897298 7897298 1 + G A UCEC 7897284 + 7897264 7897304 41 AAGCCCCAGCAAAGTATGTGCAAGACAACATCCAGCTTCAT AAGCCCCAGCAAAGTATGTGCAAGACAACATCCAACTTCAT < 41bp 1 0.661192812426538 1 0.0973699986934662 experiment 0.677614375146924 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7897284 chr5:7897298 synonymous SNV . 0 35 hm5C_associated_SNPs_44500 0 0 1 1 1 MTRR chr5:7897360 5'GT 7897360 Upstream 63bp
chr11 73074836 73074836 1 + A G UCEC 73074840 + 73074820 73074860 41 ATCCGTGACCGCAGGAACAGCATGAAGCTCCAGCATGCGGC ATCCGTGACCGCAGGAGCAGCATGAAGCTCCAGCATGCGGC < 41bp 1 0.347115840214989 1 0.206224769353867 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73074840 chr11:73074836 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_44503 0 0 1 0 1 ARHGEF17 chr11:73074878 5'GT 73074878 Upstream 43bp
chr7 106797468 106797468 1 + G T UCEC 106797463 + 106797443 106797483 41 TTCTTTTTTCATTGTAGAATCTGGAGAAGTGAAAATTACTA TTCTTTTTTCATTGTAGAATCTGGATAAGTGAAAATTACTA < 41bp 1 0.756775436850137 1 0.696891069412231 experiment 0.486449126299726 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106797463 chr7:106797468 stopgain 1.000 1 26 hm5C_associated_SNPs_44504 0 0 1 0 2 PRKAR2B chr7:106797429 3'AG 106797429 Downstream 40bp
chr7 106797468 106797468 1 + G T UCEC 106797463 + 106797443 106797483 41 TTCTTTTTTCATTGTAGAATCTGGAGAAGTGAAAATTACTA TTCTTTTTTCATTGTAGAATCTGGATAAGTGAAAATTACTA < 41bp 1 0.756775436850137 1 0.696891069412231 experiment 0.486449126299726 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106797463 chr7:106797468 stopgain 1.000 1 26 hm5C_associated_SNPs_44504 0 0 1 0 2 PRKAR2B chr7:106797494 5'GT 106797494 Upstream 27bp
chr19 42373183 42373183 1 + C T UCEC 42373186 + 42373166 42373206 41 GGGGGACGTCAGAGAAACGGCGTCATGCCCAGCCACTTCAG GGGGGACGTCAGAGAAATGGCGTCATGCCCAGCCACTTCAG < 41bp 1 0.76744940058427 1 0.652410268783569 experiment 0.465101198831461 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373186 chr19:42373183 nonsynonymous SNV 0.992 1 18 hm5C_associated_SNPs_44505 0 0 1 0 1 RPS19 chr19:42373101 3'AG 42373101 Downstream 83bp
chr19 42373183 42373183 1 + C T UCEC 42373193 + 42373173 42373213 41 GTCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGC GTCAGAGAAATGGCGTCATGCCCAGCCACTTCAGCCGAGGC < 41bp 1 0.29683130708873 1 0.126034915447235 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373193 chr19:42373183 nonsynonymous SNV 0.992 1 11 hm5C_associated_SNPs_44506 0 0 1 0 1 RPS19 chr19:42373101 3'AG 42373101 Downstream 83bp
chr19 42373183 42373183 1 + C T UCEC 42373194 + 42373174 42373214 41 TCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCT TCAGAGAAATGGCGTCATGCCCAGCCACTTCAGCCGAGGCT < 41bp 1 0.257710013195658 1 0.15303510427475 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373194 chr19:42373183 nonsynonymous SNV 0.992 1 10 hm5C_associated_SNPs_44507 0 0 1 0 1 RPS19 chr19:42373101 3'AG 42373101 Downstream 83bp
chr19 42373183 42373183 1 + C T UCEC 42373198 + 42373178 42373218 41 AGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAA AGAAATGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAA < 41bp 1 0.170266940487312 1 0.296389311552048 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373198 chr19:42373183 nonsynonymous SNV 0.992 1 6 hm5C_associated_SNPs_44508 0 0 1 0 1 RPS19 chr19:42373101 3'AG 42373101 Downstream 83bp
chr19 42373183 42373183 1 + C T UCEC 42373199 + 42373179 42373219 41 GAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAAG GAAATGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAAG < 41bp 1 0.220880991653195 1 0.285202711820602 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373199 chr19:42373183 nonsynonymous SNV 0.992 1 5 hm5C_associated_SNPs_44509 0 0 1 0 1 RPS19 chr19:42373101 3'AG 42373101 Downstream 83bp
chr9 33366685 33366685 1 + T C UCEC 33366677 + 33366657 33366697 41 CCTCCCATGAACAGAGACCACCGCCGGATCATCCATGACTT CCTCCCATGAACAGAGACCACCGCCGGACCATCCATGACTT < 41bp 1 0.271605909552643 1 0.294218838214874 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33366677 chr9:33366685 nonsynonymous SNV 0.999 1 29 hm5C_associated_SNPs_44510 0 0 1 0 2 NFX1 chr9:33366627 3'AG 33366627 Downstream 59bp
chr9 33366685 33366685 1 + T C UCEC 33366677 + 33366657 33366697 41 CCTCCCATGAACAGAGACCACCGCCGGATCATCCATGACTT CCTCCCATGAACAGAGACCACCGCCGGACCATCCATGACTT < 41bp 1 0.271605909552643 1 0.294218838214874 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33366677 chr9:33366685 nonsynonymous SNV 0.999 1 29 hm5C_associated_SNPs_44510 0 0 1 0 2 NFX1 chr9:33366772 5'GT 33366772 Upstream 88bp
chr1 53420455 53420455 1 + T C UCEC 53420465 + 53420445 53420485 41 AGAAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT AGAAGATGAGCAAGGGAAGCCTTGGAATAAAAGTGAGTGTT < 41bp 1 0.389679932793735 1 0.225809842348099 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53420465 chr1:53420455 synonymous SNV . 0 11 hm5C_associated_SNPs_44512 0 0 1 0 2 SCP2 chr1:53420412 3'AG 53420412 Downstream 44bp
chr1 53420455 53420455 1 + T C UCEC 53420465 + 53420445 53420485 41 AGAAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT AGAAGATGAGCAAGGGAAGCCTTGGAATAAAAGTGAGTGTT < 41bp 1 0.389679932793735 1 0.225809842348099 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53420465 chr1:53420455 synonymous SNV . 0 11 hm5C_associated_SNPs_44512 0 0 1 0 2 SCP2 chr1:53420476 5'GT 53420476 Upstream 22bp
chr17 7479876 7479876 1 + T C UCEC 7479871 + 7479851 7479891 41 GTGGTCATGGCACTAGGAGACTACATGGGCGCCTCCTGTCA GTGGTCATGGCACTAGGAGACTACACGGGCGCCTCCTGTCA < 41bp 1 0.743867571199737 1 0.847370743751526 experiment 0.512264857600526 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479871 chr17:7479876 nonsynonymous SNV 0.997 2 26 hm5C_associated_SNPs_44514 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 35bp
chr17 7479876 7479876 1 + T C UCEC 7479886 + 7479866 7479906 41 GGAGACTACATGGGCGCCTCCTGTCACGCCTGTATCGGGGG GGAGACTACACGGGCGCCTCCTGTCACGCCTGTATCGGGGG < 41bp 1 0.176379893118058 1 0.29585736989975 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479886 chr17:7479876 nonsynonymous SNV 0.997 2 11 hm5C_associated_SNPs_44515 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 35bp
chr17 7479876 7479876 1 + T C UCEC 7479892 + 7479872 7479912 41 TACATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAA TACACGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAA < 41bp 1 0.688891605817873 1 0.1119344830513 experiment 0.622216788364254 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479892 chr17:7479876 nonsynonymous SNV 0.997 2 5 hm5C_associated_SNPs_44516 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 35bp
chr17 7479876 7479876 1 + T C UCEC 7479895 + 7479875 7479915 41 ATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAACGT ACGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAACGT < 41bp 1 0.571021315134376 1 0.298053413629532 experiment 0.857957369731247 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479895 chr17:7479876 nonsynonymous SNV 0.997 2 2 hm5C_associated_SNPs_44517 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 35bp
chr5 139892987 139892987 1 + G A UCEC 139893005 + 139892985 139893025 41 TTGTGAAGGCTAAAGACCAGCAAGCTGCAGAAGCAAATAAG TTATGAAGGCTAAAGACCAGCAAGCTGCAGAAGCAAATAAG < 41bp 1 0.169299060593846 1 0.407388538122177 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139893005 chr5:139892987 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_44518 0 0 1 0 2 ANKHD1;ANKHD1-EIF4EBP3 chr5:139892948 3'AG 139892948 Downstream 40bp
chr5 139892987 139892987 1 + G A UCEC 139893005 + 139892985 139893025 41 TTGTGAAGGCTAAAGACCAGCAAGCTGCAGAAGCAAATAAG TTATGAAGGCTAAAGACCAGCAAGCTGCAGAAGCAAATAAG < 41bp 1 0.169299060593846 1 0.407388538122177 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139893005 chr5:139892987 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_44518 0 0 1 0 2 ANKHD1;ANKHD1-EIF4EBP3 chr5:139893064 5'GT 139893064 Upstream 78bp
chr2 102472563 102472563 1 + G A UCEC 102472562 + 102472542 102472582 41 AAGAAGAAGAGGAGAGGAGACGGGCAGAAGAAGAAAAGAGG AAGAAGAAGAGGAGAGGAGACAGGCAGAAGAAGAAAAGAGG < 41bp 1 0.502970451480264 1 0.556477963924408 experiment 0.994059097039472 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102472562 chr2:102472563 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_44520 0 0 1 0 1 MAP4K4 chr2:102472600 5'GT 102472600 Upstream 38bp
chr2 102472563 102472563 1 + G A UCEC 102472566 + 102472546 102472586 41 AGAAGAGGAGAGGAGACGGGCAGAAGAAGAAAAGAGGAGAG AGAAGAGGAGAGGAGACAGGCAGAAGAAGAAAAGAGGAGAG < 41bp 1 0.778698134617897 1 0.694413661956787 experiment 0.442603730764205 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102472566 chr2:102472563 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_44521 0 0 1 0 1 MAP4K4 chr2:102472600 5'GT 102472600 Upstream 38bp
chr12 69119574 69119574 1 + A G UCEC 69119560 + 69119540 69119580 41 ATAGTTCAAAAGTTTCTTATCCTGGGAGACATTGATGGTAA ATAGTTCAAAAGTTTCTTATCCTGGGAGACATTGGTGGTAA < 41bp 1 0.401227131168993 1 0.389463245868683 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69119560 chr12:69119574 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_44523 0 0 0 0 2 NUP107 chr12:69119507 3'AG 69119507 Downstream 68bp
chr12 69119574 69119574 1 + A G UCEC 69119560 + 69119540 69119580 41 ATAGTTCAAAAGTTTCTTATCCTGGGAGACATTGATGGTAA ATAGTTCAAAAGTTTCTTATCCTGGGAGACATTGGTGGTAA < 41bp 1 0.401227131168993 1 0.389463245868683 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69119560 chr12:69119574 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_44523 0 0 0 0 2 NUP107 chr12:69119576 5'GT 69119576 Upstream 3bp
chr8 28906561 28906561 1 + A G UCEC 28906541 + 28906521 28906561 41 CACTCAAACAGTGATGATGTCGACGGGAATGACTACTCTGA CACTCAAACAGTGATGATGTCGACGGGAATGACTACTCTGG < 41bp 1 0.758710878728762 1 0.37006551027298 experiment 0.482578242542477 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906541 chr8:28906561 nonsynonymous SNV 0.987 4 41 hm5C_associated_SNPs_44524 0 0 1 0 4 HMBOX1 chr8:28906471 3'AG 28906471 Downstream 91bp
chr8 28906561 28906561 1 + A G UCEC 28906541 + 28906521 28906561 41 CACTCAAACAGTGATGATGTCGACGGGAATGACTACTCTGA CACTCAAACAGTGATGATGTCGACGGGAATGACTACTCTGG < 41bp 1 0.758710878728762 1 0.37006551027298 experiment 0.482578242542477 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906541 chr8:28906561 nonsynonymous SNV 0.987 4 41 hm5C_associated_SNPs_44524 0 0 1 0 4 HMBOX1 chr8:28906474 3'AG 28906474 Downstream 88bp
chr8 28906561 28906561 1 + A G UCEC 28906541 + 28906521 28906561 41 CACTCAAACAGTGATGATGTCGACGGGAATGACTACTCTGA CACTCAAACAGTGATGATGTCGACGGGAATGACTACTCTGG < 41bp 1 0.758710878728762 1 0.37006551027298 experiment 0.482578242542477 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906541 chr8:28906561 nonsynonymous SNV 0.987 4 41 hm5C_associated_SNPs_44524 0 0 1 0 4 HMBOX1 chr8:28906477 3'AG 28906477 Downstream 85bp
chr8 28906561 28906561 1 + A G UCEC 28906541 + 28906521 28906561 41 CACTCAAACAGTGATGATGTCGACGGGAATGACTACTCTGA CACTCAAACAGTGATGATGTCGACGGGAATGACTACTCTGG < 41bp 1 0.758710878728762 1 0.37006551027298 experiment 0.482578242542477 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906541 chr8:28906561 nonsynonymous SNV 0.987 4 41 hm5C_associated_SNPs_44524 0 0 1 0 4 HMBOX1 chr8:28906565 5'GT 28906565 Upstream 5bp
chr8 28906561 28906561 1 + A G UCEC 28906553 + 28906533 28906573 41 GATGATGTCGACGGGAATGACTACTCTGAGCAGGTGAGCCC GATGATGTCGACGGGAATGACTACTCTGGGCAGGTGAGCCC < 41bp 1 0.692941925890485 1 0.378070592880249 experiment 0.61411614821903 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906553 chr8:28906561 nonsynonymous SNV 0.987 4 29 hm5C_associated_SNPs_44525 0 0 1 0 4 HMBOX1 chr8:28906471 3'AG 28906471 Downstream 91bp
chr8 28906561 28906561 1 + A G UCEC 28906553 + 28906533 28906573 41 GATGATGTCGACGGGAATGACTACTCTGAGCAGGTGAGCCC GATGATGTCGACGGGAATGACTACTCTGGGCAGGTGAGCCC < 41bp 1 0.692941925890485 1 0.378070592880249 experiment 0.61411614821903 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906553 chr8:28906561 nonsynonymous SNV 0.987 4 29 hm5C_associated_SNPs_44525 0 0 1 0 4 HMBOX1 chr8:28906474 3'AG 28906474 Downstream 88bp
chr8 28906561 28906561 1 + A G UCEC 28906553 + 28906533 28906573 41 GATGATGTCGACGGGAATGACTACTCTGAGCAGGTGAGCCC GATGATGTCGACGGGAATGACTACTCTGGGCAGGTGAGCCC < 41bp 1 0.692941925890485 1 0.378070592880249 experiment 0.61411614821903 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906553 chr8:28906561 nonsynonymous SNV 0.987 4 29 hm5C_associated_SNPs_44525 0 0 1 0 4 HMBOX1 chr8:28906477 3'AG 28906477 Downstream 85bp
chr8 28906561 28906561 1 + A G UCEC 28906553 + 28906533 28906573 41 GATGATGTCGACGGGAATGACTACTCTGAGCAGGTGAGCCC GATGATGTCGACGGGAATGACTACTCTGGGCAGGTGAGCCC < 41bp 1 0.692941925890485 1 0.378070592880249 experiment 0.61411614821903 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906553 chr8:28906561 nonsynonymous SNV 0.987 4 29 hm5C_associated_SNPs_44525 0 0 1 0 4 HMBOX1 chr8:28906565 5'GT 28906565 Upstream 5bp
chr16 842515 842515 1 + C A UCEC 842525 + 842505 842545 41 CCGGCTGTGCCTTCGGGAGGCGGCCGACGGCGCCGGGCAGA CCGGCTGTGCATTCGGGAGGCGGCCGACGGCGCCGGGCAGA < 41bp 1 0.532767479508809 1 0.665794968605042 experiment 0.934465040982381 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842525 chr16:842515 nonsynonymous SNV 0.001 1 11 hm5C_associated_SNPs_44527 0 0 1 0 2 CHTF18 chr16:842439 3'AG 842439 Downstream 77bp
chr16 842515 842515 1 + C A UCEC 842525 + 842505 842545 41 CCGGCTGTGCCTTCGGGAGGCGGCCGACGGCGCCGGGCAGA CCGGCTGTGCATTCGGGAGGCGGCCGACGGCGCCGGGCAGA < 41bp 1 0.532767479508809 1 0.665794968605042 experiment 0.934465040982381 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842525 chr16:842515 nonsynonymous SNV 0.001 1 11 hm5C_associated_SNPs_44527 0 0 1 0 2 CHTF18 chr16:842590 5'GT 842590 Upstream 76bp
chr21 34787291 34787291 1 + G A UCEC 34787311 + 34787291 34787331 41 GCACGAGGCCTGTTGTCTACCAAGTGCAGTTTAAATAGTAA ACACGAGGCCTGTTGTCTACCAAGTGCAGTTTAAATAGTAA < 41bp 1 0.549158109138357 1 0.5376296043396 experiment 0.901683781723286 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFNGR2 ENSG00000159128 CDS Human protein_coding chr21:34787311 chr21:34787291 nonsynonymous SNV 0.000 1 1 hm5C_associated_SNPs_44529 0 0 1 0 2 IFNGR2 chr21:34787195 3'AG 34787195 Downstream 97bp
chr21 34787291 34787291 1 + G A UCEC 34787311 + 34787291 34787331 41 GCACGAGGCCTGTTGTCTACCAAGTGCAGTTTAAATAGTAA ACACGAGGCCTGTTGTCTACCAAGTGCAGTTTAAATAGTAA < 41bp 1 0.549158109138357 1 0.5376296043396 experiment 0.901683781723286 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFNGR2 ENSG00000159128 CDS Human protein_coding chr21:34787311 chr21:34787291 nonsynonymous SNV 0.000 1 1 hm5C_associated_SNPs_44529 0 0 1 0 2 IFNGR2 chr21:34787327 5'GT 34787327 Upstream 37bp
chr1 200730053 200730053 1 + C A UCEC 200730036 + 200730016 200730056 41 CCAGGAACACATCAAACCACCTGTTGTTAATTTGCTTCTAT CCAGGAACACATCAAACCACCTGTTGTTAATTTGCTTATAT < 41bp 1 0.188615242782922 1 0.0576754510402679 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200730036 chr1:200730053 nonsynonymous SNV 0.998 4 38 hm5C_associated_SNPs_44530 0 0 1 0 1 CAMSAP2 chr1:200729967 3'AG 200729967 Downstream 87bp
chr12 51117075 51117075 1 + C T UCEC 51117087 + 51117067 51117107 41 CCTCACGGCCACGCTGCCCACTGTCCGAATGATTGTTGATG CCTCACGGTCACGCTGCCCACTGTCCGAATGATTGTTGATG < 41bp 1 0.112998551820745 1 0.0541536211967468 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51117087 chr12:51117075 nonsynonymous SNV 0.615 2 9 hm5C_associated_SNPs_44531 0 0 1 0 2 DIP2B chr12:51116985 3'AG 51116985 Downstream 91bp
chr12 51117075 51117075 1 + C T UCEC 51117087 + 51117067 51117107 41 CCTCACGGCCACGCTGCCCACTGTCCGAATGATTGTTGATG CCTCACGGTCACGCTGCCCACTGTCCGAATGATTGTTGATG < 41bp 1 0.112998551820745 1 0.0541536211967468 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51117087 chr12:51117075 nonsynonymous SNV 0.615 2 9 hm5C_associated_SNPs_44531 0 0 1 0 2 DIP2B chr12:51117106 5'GT 51117106 Upstream 32bp
chr16 705356 705356 1 + G A UCEC 705347 + 705327 705367 41 GCAGTGTGCGGCTCTGGCGGCTGCGTGGCGGGGTGCTGCGT GCAGTGTGCGGCTCTGGCGGCTGCGTGGCAGGGTGCTGCGT < 41bp 1 0.480967694991231 1 0.306684136390686 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:705347 chr16:705356 nonsynonymous SNV 0.000 0 30 hm5C_associated_SNPs_44533 0 0 1 0 1 WDR90 chr16:705307 3'AG 705307 Downstream 50bp
chr12 56537032 56537032 1 + T C UCEC 56537025 + 56537005 56537045 41 ACCCCAGGTTTGAGTGGGAACTCCCCCTGGATGAGGCCCAG ACCCCAGGTTTGAGTGGGAACTCCCCCCGGATGAGGCCCAG < 41bp 1 0.30223262669321 1 0.578854084014893 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56537025 chr12:56537032 nonsynonymous SNV 0.940 2 28 hm5C_associated_SNPs_44534 0 0 1 0 2 ESYT1 chr12:56537012 3'AG 56537012 Downstream 21bp
chr12 56537032 56537032 1 + T C UCEC 56537025 + 56537005 56537045 41 ACCCCAGGTTTGAGTGGGAACTCCCCCTGGATGAGGCCCAG ACCCCAGGTTTGAGTGGGAACTCCCCCCGGATGAGGCCCAG < 41bp 1 0.30223262669321 1 0.578854084014893 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56537025 chr12:56537032 nonsynonymous SNV 0.940 2 28 hm5C_associated_SNPs_44534 0 0 1 0 2 ESYT1 chr12:56537117 5'GT 56537117 Upstream 86bp
chr20 57289644 57289644 1 + C T UCEC 57289631 + 57289611 57289651 41 CCTAGGACCGAGACAACAGCCCCAGCTCCTGTGCTGGCCTC CCTAGGACCGAGACAACAGCCCCAGCTCCTGTGTTGGCCTC < 41bp 1 0.402359525486397 1 0.477839171886444 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57289631 chr20:57289644 nonsynonymous SNV 0.993 4 34 hm5C_associated_SNPs_44536 0 0 1 0 2 NPEPL1 chr20:57289616 3'AG 57289616 Downstream 29bp
chr20 57289644 57289644 1 + C T UCEC 57289631 + 57289611 57289651 41 CCTAGGACCGAGACAACAGCCCCAGCTCCTGTGCTGGCCTC CCTAGGACCGAGACAACAGCCCCAGCTCCTGTGTTGGCCTC < 41bp 1 0.402359525486397 1 0.477839171886444 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57289631 chr20:57289644 nonsynonymous SNV 0.993 4 34 hm5C_associated_SNPs_44536 0 0 1 0 2 NPEPL1 chr20:57289726 5'GT 57289726 Upstream 83bp
chr10 112361863 112361863 1 + A G UCEC 112361869 + 112361849 112361889 41 GTTAGATAGGGGTTACAAATCAATCATGGAACTGATGAATG GTTAGATAGGGGTTGCAAATCAATCATGGAACTGATGAATG < 41bp 1 0.279865455492395 1 0.147938370704651 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMC3 ENSG00000108055 CDS Human protein_coding chr10:112361869 chr10:112361863 nonsynonymous SNV 0.949 1 15 hm5C_associated_SNPs_44538 0 0 1 0 1 SMC3 chr10:112361936 5'GT 112361936 Upstream 74bp
chr8 143816793 143816793 1 + A G UCEC 143816777 + 143816757 143816797 41 AGCTGCCCGCTGATCTGCAGCACTGGATCTCCTACAACGAG AGCTGCCCGCTGATCTGCAGCACTGGATCTCCTACAGCGAG < 41bp 1 0.276888894839107 1 0.173095285892487 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THEM6 ENSG00000130193 CDS Human protein_coding chr8:143816777 chr8:143816793 nonsynonymous SNV 0.796 2 37 hm5C_associated_SNPs_44539 0 0 1 0 1 THEM6 chr8:143816744 3'AG 143816744 Downstream 50bp
chr16 50813906 50813906 1 + G T UCEC 50813901 + 50813881 50813921 41 CCTCCTTTCTATGGGGTAATCCGTTGGATCGGTCAGCCACC CCTCCTTTCTATGGGGTAATCCGTTTGATCGGTCAGCCACC < 41bp 1 0.286927565504021 1 0.160710781812668 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CYLD ENSG00000083799 CDS Human protein_coding chr16:50813901 chr16:50813906 nonsynonymous SNV 1.000 5 26 hm5C_associated_SNPs_44540 0 0 0 0 1 CYLD chr16:50813955 5'GT 50813955 Upstream 50bp
chr7 104717810 104717810 1 + C G UCEC 104717824 + 104717804 104717844 41 GATGCACTTATCATTGAATACAGAGGGAAGTTTATGCTGAG GATGCAGTTATCATTGAATACAGAGGGAAGTTTATGCTGAG < 41bp 1 0.558179622235683 1 0.772397756576538 experiment 0.883640755528634 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KMT2E ENSG00000005483 CDS Human protein_coding chr7:104717824 chr7:104717810 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_44541 0 0 1 0 1 KMT2E chr7:104717880 5'GT 104717880 Upstream 71bp
chr19 42373817 42373817 1 + C G UCEC 42373808 + 42373788 42373828 41 CAGGGACAAAGAGATCTGGACAGAATCGCCGGACAGGTAAG CAGGGACAAAGAGATCTGGACAGAATCGCGGGACAGGTAAG < 41bp 1 0.588943683029656 1 0.263968706130981 experiment 0.822112633940687 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373808 chr19:42373817 synonymous SNV . 0 30 hm5C_associated_SNPs_44542 0 0 1 0 2 RPS19 chr19:42373769 3'AG 42373769 Downstream 49bp
chr19 42373817 42373817 1 + C G UCEC 42373808 + 42373788 42373828 41 CAGGGACAAAGAGATCTGGACAGAATCGCCGGACAGGTAAG CAGGGACAAAGAGATCTGGACAGAATCGCGGGACAGGTAAG < 41bp 1 0.588943683029656 1 0.263968706130981 experiment 0.822112633940687 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373808 chr19:42373817 synonymous SNV . 0 30 hm5C_associated_SNPs_44542 0 0 1 0 2 RPS19 chr19:42373823 5'GT 42373823 Upstream 7bp
chr11 58379202 58379202 1 + C A UCEC 58379204 + 58379184 58379224 41 TTAGAGAGGATGAGGAACCTCCAAGGAAGTGAGTAGGCAAT TTAGAGAGGATGAGGAACATCCAAGGAAGTGAGTAGGCAAT < 41bp 1 0.253704296480342 1 0.418588906526566 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58379204 chr11:58379202 nonsynonymous SNV 0.998 3 19 hm5C_associated_SNPs_44544 0 0 1 0 1 ZFP91 chr11:58379211 5'GT 58379211 Upstream 10bp
chr11 58379202 58379202 1 + C A UCEC 58379205 + 58379185 58379225 41 TAGAGAGGATGAGGAACCTCCAAGGAAGTGAGTAGGCAATT TAGAGAGGATGAGGAACATCCAAGGAAGTGAGTAGGCAATT < 41bp 1 0.678510593892549 1 0.468381643295288 experiment 0.642978812214901 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58379205 chr11:58379202 nonsynonymous SNV 0.998 3 18 hm5C_associated_SNPs_44545 0 0 1 0 1 ZFP91 chr11:58379211 5'GT 58379211 Upstream 10bp
chr19 9939272 9939272 1 + G A UCEC 9939290 + 9939270 9939310 41 CGGATGATACCATCGGGGACCTTAAGAAGCTGATTGCAGCC CGAATGATACCATCGGGGACCTTAAGAAGCTGATTGCAGCC < 41bp 1 0.419805200738568 1 0.130843073129654 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBL5 ENSG00000198258 CDS Human protein_coding chr19:9939290 chr19:9939272 nonsynonymous SNV 0.975 1 3 hm5C_associated_SNPs_44547 0 0 1 0 2 UBL5 chr19:9939268 3'AG 9939268 Downstream 5bp
chr19 9939272 9939272 1 + G A UCEC 9939290 + 9939270 9939310 41 CGGATGATACCATCGGGGACCTTAAGAAGCTGATTGCAGCC CGAATGATACCATCGGGGACCTTAAGAAGCTGATTGCAGCC < 41bp 1 0.419805200738568 1 0.130843073129654 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBL5 ENSG00000198258 CDS Human protein_coding chr19:9939290 chr19:9939272 nonsynonymous SNV 0.975 1 3 hm5C_associated_SNPs_44547 0 0 1 0 2 UBL5 chr19:9939351 5'GT 9939351 Upstream 80bp
chr19 49685863 49685863 1 + A T UCEC 49685868 + 49685848 49685888 41 AAGCTTCCCTCATGGACGCCCTGCTGAATGACCGGCCTGAG AAGCTTCCCTCATGGTCGCCCTGCTGAATGACCGGCCTGAG < 41bp 1 0.386898080141795 1 0.168413579463959 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49685868 chr19:49685863 nonsynonymous SNV 0.994 4 16 hm5C_associated_SNPs_44548 0 0 1 0 1 TRPM4 chr19:49685835 3'AG 49685835 Downstream 29bp
chr19 46003765 46003765 1 + C A UCEC 46003772 + 46003752 46003792 41 ACAGTTTTCAGGACTCTGGCCTCAGAGGACATCCCAGATTT ACAGTTTTCAGGAATCTGGCCTCAGAGGACATCCCAGATTT < 41bp 1 0.485981431828785 1 0.241367399692535 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPM1N ENSG00000213889 CDS Human protein_coding chr19:46003772 chr19:46003765 nonsynonymous SNV 0.981 0 14 hm5C_associated_SNPs_44549 0 0 0 0 2 PPM1N chr19:46003714 3'AG 46003714 Downstream 52bp
chr19 46003765 46003765 1 + C A UCEC 46003772 + 46003752 46003792 41 ACAGTTTTCAGGACTCTGGCCTCAGAGGACATCCCAGATTT ACAGTTTTCAGGAATCTGGCCTCAGAGGACATCCCAGATTT < 41bp 1 0.485981431828785 1 0.241367399692535 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPM1N ENSG00000213889 CDS Human protein_coding chr19:46003772 chr19:46003765 nonsynonymous SNV 0.981 0 14 hm5C_associated_SNPs_44549 0 0 0 0 2 PPM1N chr19:46003819 5'GT 46003819 Upstream 55bp
chr19 46003765 46003765 1 + C A UCEC 46003784 + 46003764 46003804 41 ACTCTGGCCTCAGAGGACATCCCAGATTTACCTCCTGGGGG AATCTGGCCTCAGAGGACATCCCAGATTTACCTCCTGGGGG < 41bp 1 0.329571730945631 1 0.536294937133789 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control PPM1N ENSG00000213889 CDS Human protein_coding chr19:46003784 chr19:46003765 nonsynonymous SNV 0.981 0 2 hm5C_associated_SNPs_44550 0 0 0 0 2 PPM1N chr19:46003714 3'AG 46003714 Downstream 52bp
chr19 46003765 46003765 1 + C A UCEC 46003784 + 46003764 46003804 41 ACTCTGGCCTCAGAGGACATCCCAGATTTACCTCCTGGGGG AATCTGGCCTCAGAGGACATCCCAGATTTACCTCCTGGGGG < 41bp 1 0.329571730945631 1 0.536294937133789 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control PPM1N ENSG00000213889 CDS Human protein_coding chr19:46003784 chr19:46003765 nonsynonymous SNV 0.981 0 2 hm5C_associated_SNPs_44550 0 0 0 0 2 PPM1N chr19:46003819 5'GT 46003819 Upstream 55bp
chr1 162470029 162470029 1 + G T UCEC 162470019 + 162469999 162470039 41 CTCATTGACTTTGGACTTAGCTTCAAAGAAGGCAATCAGGT CTCATTGACTTTGGACTTAGCTTCAAAGAATGCAATCAGGT < 41bp 1 0.376563701615415 1 0.135961204767227 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162470019 chr1:162470029 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_44551 0 0 1 0 1 UHMK1 chr1:162470037 5'GT 162470037 Upstream 9bp
chr5 173380238 173380238 1 + G A UCEC 173380246 + 173380226 173380266 41 CTATCAGTGCCCGCTTTGTTCAGCTGCAGCATGGAGAGATA CTATCAGTGCCCACTTTGTTCAGCTGCAGCATGGAGAGATA < 41bp 1 0.492697852435594 1 0.405221492052078 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173380246 chr5:173380238 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_44552 0 0 1 0 1 CPEB4 chr5:173380275 5'GT 173380275 Upstream 38bp
chr6 36566723 36566723 1 + G T UCEC 36566703 + 36566683 36566723 41 AAATCGTGGCCCACCTCCCTCTTGGGGTCGTCGCCCTCGAG AAATCGTGGCCCACCTCCCTCTTGGGGTCGTCGCCCTCGAT < 41bp 1 0.715184278544407 1 0.277258336544037 experiment 0.569631442911186 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36566703 chr6:36566723 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_44554 0 0 1 0 2 SRSF3 chr6:36566626 3'AG 36566626 Downstream 98bp
chr6 36566723 36566723 1 + G T UCEC 36566703 + 36566683 36566723 41 AAATCGTGGCCCACCTCCCTCTTGGGGTCGTCGCCCTCGAG AAATCGTGGCCCACCTCCCTCTTGGGGTCGTCGCCCTCGAT < 41bp 1 0.715184278544407 1 0.277258336544037 experiment 0.569631442911186 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36566703 chr6:36566723 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_44554 0 0 1 0 2 SRSF3 chr6:36566760 5'GT 36566760 Upstream 38bp
chr11 122817429 122817429 1 + C T UCEC 122817446 + 122817426 122817466 41 AGCCGTAGCAATTCTGAAGGCTATCTGTTTCAACTGGAAAA AGCTGTAGCAATTCTGAAGGCTATCTGTTTCAACTGGAAAA < 41bp 1 0.0991563628215909 1 0.0926916301250458 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122817446 chr11:122817429 nonsynonymous SNV 0.435 2 4 hm5C_associated_SNPs_44555 0 0 0 0 1 C11orf63 chr11:122817500 5'GT 122817500 Upstream 72bp
chr17 37360836 37360836 1 + C T UCEC 37360816 + 37360796 37360836 41 CAGGTCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGC CAGGTCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGT < 41bp 1 0.390213321080355 1 0.172549158334732 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360816 chr17:37360836 nonsynonymous SNV 0.998 2 41 hm5C_associated_SNPs_44556 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 59bp
chr17 37360836 37360836 1 + C T UCEC 37360820 + 37360800 37360840 41 TCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGCGCCT TCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGTGCCT < 41bp 1 0.603302867075599 1 0.696558713912964 experiment 0.793394265848801 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360820 chr17:37360836 nonsynonymous SNV 0.998 2 37 hm5C_associated_SNPs_44557 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 59bp
chr17 37360836 37360836 1 + C T UCEC 37360846 + 37360826 37360866 41 CCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCATCA CCGTGAAGAGTGCCTCCAGGCCAAGAAGGAGGAGATCATCA < 41bp 1 0.334872448274561 1 0.252057641744614 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360846 chr17:37360836 nonsynonymous SNV 0.998 2 11 hm5C_associated_SNPs_44558 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 59bp
chr1 109804151 109804151 1 + C T UCEC 109804156 + 109804136 109804176 41 TTTGCCACAAAGGAGCGCGACGGGTTGCTGTTGTACAATGG TTTGCCACAAAGGAGTGCGACGGGTTGCTGTTGTACAATGG < 41bp 1 0.275319183160646 1 0.42434698343277 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109804156 chr1:109804151 nonsynonymous SNV 0.773 3 16 hm5C_associated_SNPs_44560 0 0 1 0 2 CELSR2 chr1:109804135 3'AG 109804135 Downstream 17bp
chr1 109804151 109804151 1 + C T UCEC 109804156 + 109804136 109804176 41 TTTGCCACAAAGGAGCGCGACGGGTTGCTGTTGTACAATGG TTTGCCACAAAGGAGTGCGACGGGTTGCTGTTGTACAATGG < 41bp 1 0.275319183160646 1 0.42434698343277 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109804156 chr1:109804151 nonsynonymous SNV 0.773 3 16 hm5C_associated_SNPs_44560 0 0 1 0 2 CELSR2 chr1:109804250 5'GT 109804250 Upstream 100bp
chr1 206902151 206902151 1 + A T UCEC 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGTATCT < 41bp 1 0.496873128713151 1 0.229875057935715 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902151 nonsynonymous SNV 0.996 3 37 hm5C_associated_SNPs_44561 0 0 1 0 2 MAPKAPK2 chr1:206902055 3'AG 206902055 Downstream 97bp
chr1 206902151 206902151 1 + A T UCEC 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGTATCT < 41bp 1 0.496873128713151 1 0.229875057935715 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902151 nonsynonymous SNV 0.996 3 37 hm5C_associated_SNPs_44561 0 0 1 0 2 MAPKAPK2 chr1:206902194 5'GT 206902194 Upstream 44bp
chr3 33877666 33877666 1 + G A UCEC 33877665 + 33877645 33877685 41 ATGACTTCATTTATCATGATCGAGTTCCAGACCTTAAAGAT ATGACTTCATTTATCATGATCAAGTTCCAGACCTTAAAGAT < 41bp 1 0.389699140685717 1 0.219258785247803 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33877665 chr3:33877666 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_44565 0 0 1 0 1 PDCD6IP chr3:33877758 5'GT 33877758 Upstream 93bp
chr16 20792043 20792043 1 + A G UCEC 20792052 + 20792032 20792072 41 GCAGACATGCCAGTGACAGCCACACCTGTGTGAAGACAAAA GCAGACATGCCGGTGACAGCCACACCTGTGTGAAGACAAAA < 41bp 1 0.346870842451761 1 0.284286081790924 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACSM3;ERI2 ENSG00000005187;ENSG00000196678 CDS Human other chr16:20792052 chr16:20792043 nonsynonymous SNV 0.933 1 12 hm5C_associated_SNPs_44566 0 0 1 0 1 ACSM3;ERI2 chr16:20792036 3'AG 20792036 Downstream 8bp
chr10 89487116 89487116 1 + G T UCEC 89487114 + 89487094 89487134 41 AAGACACGGCTGGAAGGGTGCAGCAAGTTTGTCCTGGCACA AAGACACGGCTGGAAGGGTGCATCAAGTTTGTCCTGGCACA < 41bp 1 0.468227916265246 1 0.188758283853531 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89487114 chr10:89487116 nonsynonymous SNV 0.986 1 23 hm5C_associated_SNPs_44567 0 0 0 0 1 PAPSS2 chr10:89487041 3'AG 89487041 Downstream 76bp
chr7 73922429 73922429 1 + C T UCEC 73922440 + 73922420 73922460 41 CTGGGTAAGCGCTGTGACGTCCCCACCAACGGCTGCGGACC CTGGGTAAGTGCTGTGACGTCCCCACCAACGGCTGCGGACC < 41bp 1 0.577902504473224 1 0.39321357011795 experiment 0.844194991053552 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73922440 chr7:73922429 nonsynonymous SNV 0.999 2 10 hm5C_associated_SNPs_44569 0 0 1 0 1 GTF2IRD1 chr7:73922405 3'AG 73922405 Downstream 25bp
chr1 11898614 11898614 1 + C A UCEC 11898626 + 11898606 11898646 41 CATGAACCCTTCGCCTTTCACCGTCTCGCCCAACACCCACG CATGAACCATTCGCCTTTCACCGTCTCGCCCAACACCCACG < 41bp 1 0.117445458862279 1 0.0507520735263824 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11898626 chr1:11898614 nonsynonymous SNV 0.944 4 9 hm5C_associated_SNPs_44570 0 0 1 0 1 CLCN6 chr1:11898592 3'AG 11898592 Downstream 23bp
chr6 158870094 158870094 1 + G A UCEC 158870090 + 158870070 158870110 41 TGCCACGGCAGAATGCTGGCCCACGTCCTCTTGCACGAGTC TGCCACGGCAGAATGCTGGCCCACATCCTCTTGCACGAGTC < 41bp 1 0.217944845044838 1 0.11327999830246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TULP4 ENSG00000130338 CDS Human protein_coding chr6:158870090 chr6:158870094 nonsynonymous SNV 0.904 1 25 hm5C_associated_SNPs_44572 0 0 0 0 1 TULP4 chr6:158870028 3'AG 158870028 Downstream 67bp
chr5 112868666 112868666 1 + G A UCEC 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA CGCTATGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA < 41bp 1 0.515136541814762 1 0.13521534204483 experiment 0.969726916370477 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868666 nonsynonymous SNV 0.998 3 5 hm5C_associated_SNPs_44575 0 0 1 0 2 YTHDC2 chr5:112868576 3'AG 112868576 Downstream 91bp
chr5 112868666 112868666 1 + G A UCEC 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA CGCTATGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA < 41bp 1 0.515136541814762 1 0.13521534204483 experiment 0.969726916370477 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868666 nonsynonymous SNV 0.998 3 5 hm5C_associated_SNPs_44575 0 0 1 0 2 YTHDC2 chr5:112868742 5'GT 112868742 Upstream 77bp
chr5 112868666 112868666 1 + G A UCEC 112868683 + 112868663 112868703 41 GCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT GCTATGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT < 41bp 1 0.613875543246443 1 0.748012959957123 experiment 0.772248913507114 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868683 chr5:112868666 nonsynonymous SNV 0.998 3 4 hm5C_associated_SNPs_44576 0 0 1 0 2 YTHDC2 chr5:112868576 3'AG 112868576 Downstream 91bp
chr5 112868666 112868666 1 + G A UCEC 112868683 + 112868663 112868703 41 GCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT GCTATGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT < 41bp 1 0.613875543246443 1 0.748012959957123 experiment 0.772248913507114 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868683 chr5:112868666 nonsynonymous SNV 0.998 3 4 hm5C_associated_SNPs_44576 0 0 1 0 2 YTHDC2 chr5:112868742 5'GT 112868742 Upstream 77bp
chr14 97014145 97014145 1 + G A UCEC 97014156 + 97014136 97014176 41 TATAGGCAAGCAATAAACAGCAAGATGTTTGAGGTGGATAT TATAGGCAAACAATAAACAGCAAGATGTTTGAGGTGGATAT < 41bp 1 0.501962733840903 1 0.197345346212387 experiment 0.996074532318194 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97014156 chr14:97014145 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_44577 0 0 1 0 1 PAPOLA chr14:97014134 3'AG 97014134 Downstream 12bp
chr22 26299786 26299786 1 + G T UCEC 26299787 + 26299767 26299807 41 AGCAGGAAAACACCATCAAGCAGCTGGAGCAGGTAGGAAAG AGCAGGAAAACACCATCAATCAGCTGGAGCAGGTAGGAAAG < 41bp 1 0.442857238913105 1 0.901329576969147 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26299787 chr22:26299786 nonsynonymous SNV 0.997 3 20 hm5C_associated_SNPs_44579 0 0 1 0 1 MYO18B chr22:26299798 5'GT 26299798 Upstream 13bp
chr1 155058969 155058969 1 + C T UCEC 155058986 + 155058966 155059006 41 CTGCCCCTGGCCGTGGGCATCGCCTTCTTCCTCATGACGTT CTGTCCCTGGCCGTGGGCATCGCCTTCTTCCTCATGACGTT < 41bp 1 0.532150830139764 1 0.34879195690155 experiment 0.935698339720472 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNA3 ENSG00000143590;ENSG00000251246 CDS Human other chr1:155058986 chr1:155058969 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_44580 0 0 0 0 1 EFNA3 chr1:155058889 3'AG 155058889 Downstream 81bp
chr11 118452208 118452208 1 + G T UCEC 118452203 + 118452183 118452223 41 ATTTTAGAAGATTTGGAGACCCTAAGGCTCTTCTCAAGAGT ATTTTAGAAGATTTGGAGACCCTAATGCTCTTCTCAAGAGT < 41bp 1 0.18176100642976 1 0.0696074366569519 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARCN1 ENSG00000095139 CDS Human protein_coding chr11:118452203 chr11:118452208 nonsynonymous SNV 0.777 4 26 hm5C_associated_SNPs_44581 0 0 1 0 1 ARCN1 chr11:118452224 5'GT 118452224 Upstream 17bp
chr7 100485933 100485933 1 + G A UCEC 100485923 + 100485903 100485943 41 CACAGGAGGCCCTCCATACCCCCATGCCCCGTATGGTGCTG CACAGGAGGCCCTCCATACCCCCATGCCCCATATGGTGCTG < 41bp 1 0.434653768466091 1 0.191416263580322 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100485923 chr7:100485933 synonymous SNV . 0 31 hm5C_associated_SNPs_44582 0 0 1 0 2 SRRT chr7:100485878 3'AG 100485878 Downstream 56bp
chr7 100485933 100485933 1 + G A UCEC 100485923 + 100485903 100485943 41 CACAGGAGGCCCTCCATACCCCCATGCCCCGTATGGTGCTG CACAGGAGGCCCTCCATACCCCCATGCCCCATATGGTGCTG < 41bp 1 0.434653768466091 1 0.191416263580322 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100485923 chr7:100485933 synonymous SNV . 0 31 hm5C_associated_SNPs_44582 0 0 1 0 2 SRRT chr7:100486004 5'GT 100486004 Upstream 72bp
chr17 16329458 16329458 1 + C A UCEC 16329457 + 16329437 16329477 41 GAGTTTTCAGGACTGAGCCACCTTTCCCGAAAGTTCACCGA GAGTTTTCAGGACTGAGCCACATTTCCCGAAAGTTCACCGA < 41bp 1 0.0256686226205712 1 0.0588530600070953 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16329457 chr17:16329458 nonsynonymous SNV 0.571 5 22 hm5C_associated_SNPs_44583 0 0 1 0 1 TRPV2 chr17:16329413 3'AG 16329413 Downstream 46bp
chr7 158734637 158734637 1 + A C UCEC 158734618 + 158734598 158734638 41 CTTTCTTCCTGGTCATAGGCCGGCTGTTCGGACGGAAGCAT CTTTCTTCCTGGTCATAGGCCGGCTGTTCGGACGGAAGCCT < 41bp 1 0.46680294925377 1 0.440789401531219 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR60 ENSG00000126870 CDS Human protein_coding chr7:158734618 chr7:158734637 nonsynonymous SNV 0.041 0 40 hm5C_associated_SNPs_44584 0 0 1 0 1 WDR60 chr7:158734616 3'AG 158734616 Downstream 22bp
chr21 45546835 45546835 1 + T A UCEC 45546824 + 45546804 45546844 41 AAACCTGAGATCAGGGTGACCTCACTCCGCTTCTCTCCCAC AAACCTGAGATCAGGGTGACCTCACTCCGCTACTCTCCCAC < 41bp 1 0.368008040592 1 0.289590179920197 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45546824 chr21:45546835 nonsynonymous SNV 0.934 4 32 hm5C_associated_SNPs_44585 0 0 1 0 2 PWP2 chr21:45546781 3'AG 45546781 Downstream 55bp
chr21 45546835 45546835 1 + T A UCEC 45546824 + 45546804 45546844 41 AAACCTGAGATCAGGGTGACCTCACTCCGCTTCTCTCCCAC AAACCTGAGATCAGGGTGACCTCACTCCGCTACTCTCCCAC < 41bp 1 0.368008040592 1 0.289590179920197 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45546824 chr21:45546835 nonsynonymous SNV 0.934 4 32 hm5C_associated_SNPs_44585 0 0 1 0 2 PWP2 chr21:45546846 5'GT 45546846 Upstream 12bp
chr11 34129833 34129833 1 + C T UCEC 34129843 + 34129823 34129863 41 AGTAGCTGAGCGGCAAAGATCTCTCTTTGTTGTAGTTGGGG AGTAGCTGAGTGGCAAAGATCTCTCTTTGTTGTAGTTGGGG < 41bp 1 0.200495950081751 1 0.0508868992328644 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129843 chr11:34129833 nonsynonymous SNV 0.993 2 11 hm5C_associated_SNPs_44591 0 0 1 0 2 NAT10 chr11:34129758 3'AG 34129758 Downstream 76bp
chr11 34129833 34129833 1 + C T UCEC 34129843 + 34129823 34129863 41 AGTAGCTGAGCGGCAAAGATCTCTCTTTGTTGTAGTTGGGG AGTAGCTGAGTGGCAAAGATCTCTCTTTGTTGTAGTTGGGG < 41bp 1 0.200495950081751 1 0.0508868992328644 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129843 chr11:34129833 nonsynonymous SNV 0.993 2 11 hm5C_associated_SNPs_44591 0 0 1 0 2 NAT10 chr11:34129880 5'GT 34129880 Upstream 48bp
chr18 74631824 74631824 1 + G A UCEC 74631822 + 74631802 74631842 41 CACTTTCACGGAGGAGGAGACAGCCCAGTTAGCCAAGATCC CACTTTCACGGAGGAGGAGACAACCCAGTTAGCCAAGATCC < 41bp 1 0.226355643807061 1 0.138303369283676 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74631822 chr18:74631824 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_44595 0 0 1 0 1 ZNF236 chr18:74631732 3'AG 74631732 Downstream 93bp
chr9 131455936 131455936 1 + G T UCEC 131455929 + 131455909 131455949 41 TCATTTAGGATTTGACGAAACGTTCGAGTCAAACGCAGAAT TCATTTAGGATTTGACGAAACGTTCGATTCAAACGCAGAAT < 41bp 1 0.104012404225048 1 0.107626855373383 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SET ENSG00000119335 CDS Human protein_coding chr9:131455929 chr9:131455936 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_44596 0 0 1 0 1 SET chr9:131455917 3'AG 131455917 Downstream 20bp
chr9 131455936 131455936 1 + G T UCEC 131455942 + 131455922 131455962 41 GACGAAACGTTCGAGTCAAACGCAGAATAAAGCCAGCAGGA GACGAAACGTTCGATTCAAACGCAGAATAAAGCCAGCAGGA < 41bp 1 0.795702920007338 1 0.52748167514801 experiment 0.408594159985324 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SET ENSG00000119335 CDS Human protein_coding chr9:131455942 chr9:131455936 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_44597 0 0 1 0 1 SET chr9:131455917 3'AG 131455917 Downstream 20bp
chr15 86278373 86278373 1 + C A UCEC 86278359 + 86278339 86278379 41 ACCTTTGGAGGATTTGACAGCCATCAGATGAATGCTTCAAA ACCTTTGGAGGATTTGACAGCCATCAGATGAATGATTCAAA < 41bp 1 0.00924573211858853 1 0.413622111082077 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AKAP13 ENSG00000170776 CDS Human protein_coding chr15:86278359 chr15:86278373 nonsynonymous SNV 0.998 2 35 hm5C_associated_SNPs_44598 0 0 1 0 1 AKAP13 chr15:86278381 5'GT 86278381 Upstream 9bp
chr7 66489945 66489945 1 + G T UCEC 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGGACCATCAGATCCTAAATTCCATT < 41bp 1 0.375959296575899 1 0.182508558034897 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489945 nonsynonymous SNV 0.057 0 28 hm5C_associated_SNPs_44599 0 0 0 0 2 TYW1 chr7:66489887 3'AG 66489887 Downstream 59bp
chr7 66489945 66489945 1 + G T UCEC 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGGACCATCAGATCCTAAATTCCATT < 41bp 1 0.375959296575899 1 0.182508558034897 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489945 nonsynonymous SNV 0.057 0 28 hm5C_associated_SNPs_44599 0 0 0 0 2 TYW1 chr7:66490009 5'GT 66490009 Upstream 65bp
chr4 166418679 166418679 1 + G T UCEC 166418676 + 166418656 166418696 41 TCTTTTAGGTTGATTTTGAACTGGAGTCATTTTCTGAAAGG TCTTTTAGGTTGATTTTGAACTGTAGTCATTTTCTGAAAGG < 41bp 1 0.550368966323952 1 0.0668288767337799 experiment 0.899262067352096 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CPE ENSG00000109472 CDS Human protein_coding chr4:166418676 chr4:166418679 stopgain 0.999 1 24 hm5C_associated_SNPs_44601 0 0 1 0 1 CPE chr4:166418664 3'AG 166418664 Downstream 16bp
chr20 61575032 61575032 1 + G A UCEC 61575018 + 61574998 61575038 41 AGGAGTCGCCCTTCGGAGACCTCCTCCACACCATGCAGAGG AGGAGTCGCCCTTCGGAGACCTCCTCCACACCATACAGAGG < 41bp 1 0.426572724203291 1 0.350594997406006 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GID8 ENSG00000101193 CDS Human protein_coding chr20:61575018 chr20:61575032 nonsynonymous SNV 0.995 2 35 hm5C_associated_SNPs_44604 0 0 1 0 1 GID8 chr20:61575044 5'GT 61575044 Upstream 13bp
chr2 176988304 176988304 1 + C A UCEC 176988301 + 176988281 176988321 41 ATTCGCAGCCGCAGCAGCAGCAACTTGACCCAAGTAAGTGC ATTCGCAGCCGCAGCAGCAGCAAATTGACCCAAGTAAGTGC < 41bp 1 0.200439748847638 1 0.120126783847809 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HOXD9 ENSG00000128709 CDS Human protein_coding chr2:176988301 chr2:176988304 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_44605 0 0 0 0 1 HOXD9 chr2:176988313 5'GT 176988313 Upstream 10bp
chr1 150297422 150297422 1 + C A UCEC 150297437 + 150297417 150297457 41 GGGAGCTGGATGAGCTGAAACCATGGATAGAGAAGACAGTG GGGAGATGGATGAGCTGAAACCATGGATAGAGAAGACAGTG < 41bp 1 0.372992837260209 1 0.148348689079285 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150297437 chr1:150297422 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_44606 0 0 1 0 2 PRPF3 chr1:150297353 3'AG 150297353 Downstream 70bp
chr1 150297422 150297422 1 + C A UCEC 150297437 + 150297417 150297457 41 GGGAGCTGGATGAGCTGAAACCATGGATAGAGAAGACAGTG GGGAGATGGATGAGCTGAAACCATGGATAGAGAAGACAGTG < 41bp 1 0.372992837260209 1 0.148348689079285 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150297437 chr1:150297422 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_44606 0 0 1 0 2 PRPF3 chr1:150297416 3'AG 150297416 Downstream 7bp
chr2 219269109 219269109 1 + C T UCEC 219269106 + 219269086 219269126 41 GAGCAACTCAGCCGTGTGGACGACGTGTACTCAGTGCTCAG GAGCAACTCAGCCGTGTGGACGATGTGTACTCAGTGCTCAG < 41bp 1 0.39487924379764 1 0.168721973896027 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219269106 chr2:219269109 synonymous SNV . 0 24 hm5C_associated_SNPs_44609 0 0 1 0 1 CTDSP1 chr2:219269020 3'AG 219269020 Downstream 90bp
chr16 70500152 70500152 1 + A C UCEC 70500158 + 70500138 70500178 41 TGCTGGACATCATGACCTATCGGGTGAGGCTGGGTGGTGGC TGCTGGACATCATGCCCTATCGGGTGAGGCTGGGTGGTGGC < 41bp 1 0.782113685679164 1 0.733150064945221 experiment 0.435772628641671 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FUK ENSG00000157353 CDS Human protein_coding chr16:70500158 chr16:70500152 nonsynonymous SNV 0.957 2 15 hm5C_associated_SNPs_44610 0 0 1 0 1 FUK chr16:70500160 5'GT 70500160 Upstream 9bp
chr3 184038426 184038426 1 + T C UCEC 184038413 + 184038393 184038433 41 TCATCTTATAGCTTTCTTTCCCCAGATCCGAATTCGAGATC TCATCTTATAGCTTTCTTTCCCCAGATCCGAATCCGAGATC < 41bp 1 0.148336669076492 1 0.404697358608246 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184038413 chr3:184038426 synonymous SNV . 0 34 hm5C_associated_SNPs_44611 0 0 1 0 1 EIF4G1 chr3:184038418 3'AG 184038418 Downstream 9bp
chr10 94822661 94822661 1 + C T UCEC 94822648 + 94822628 94822668 41 CGCGCATCCTGCTGGGGTTGCGGCTGGACGAGGCGCAGTGC CGCGCATCCTGCTGGGGTTGCGGCTGGACGAGGTGCAGTGC < 41bp 1 0.686866724939426 1 0.458097666501999 experiment 0.626266550121147 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94822648 chr10:94822661 nonsynonymous SNV 0.467 0 34 hm5C_associated_SNPs_44613 0 0 0 0 1 CYP26C1 chr10:94822752 5'GT 94822752 Upstream 92bp
chr10 94822661 94822661 1 + C T UCEC 94822663 + 94822643 94822683 41 GGTTGCGGCTGGACGAGGCGCAGTGCGCCACGCTGGCCCGG GGTTGCGGCTGGACGAGGTGCAGTGCGCCACGCTGGCCCGG < 41bp 1 0.700383329527513 1 0.704032063484192 experiment 0.599233340944974 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94822663 chr10:94822661 nonsynonymous SNV 0.467 0 19 hm5C_associated_SNPs_44614 0 0 0 0 1 CYP26C1 chr10:94822752 5'GT 94822752 Upstream 92bp
chr2 27662640 27662640 1 + T A UCEC 27662638 + 27662618 27662658 41 TGTTTCCTTTTCTAGGAGTTCATTCAAAAGTGCCTGCAGTC TGTTTCCTTTTCTAGGAGTTCAATCAAAAGTGCCTGCAGTC < 41bp 1 0.120338524137971 1 0.42230162024498 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27662638 chr2:27662640 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_44617 0 0 1 0 1 NRBP1 chr2:27662633 3'AG 27662633 Downstream 8bp
chr7 129064961 129064961 1 + T C UCEC 129064943 + 129064923 129064963 41 TTTACAATGCTCCTGAGGGTCGCTATAAGCAGGATGTCTAC TTTACAATGCTCCTGAGGGTCGCTATAAGCAGGATGTCCAC < 41bp 1 0.634384574697633 1 0.614601135253906 experiment 0.731230850604734 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064943 chr7:129064961 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_44620 0 0 0 0 2 AHCYL2 chr7:129064904 3'AG 129064904 Downstream 58bp
chr7 129064961 129064961 1 + T C UCEC 129064943 + 129064923 129064963 41 TTTACAATGCTCCTGAGGGTCGCTATAAGCAGGATGTCTAC TTTACAATGCTCCTGAGGGTCGCTATAAGCAGGATGTCCAC < 41bp 1 0.634384574697633 1 0.614601135253906 experiment 0.731230850604734 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064943 chr7:129064961 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_44620 0 0 0 0 2 AHCYL2 chr7:129064982 5'GT 129064982 Upstream 22bp
chr13 114292034 114292034 1 + C A UCEC 114292033 + 114292013 114292053 41 ATATCCGGAAGCTTCTACAGCCGTCTGTCCTGTGGAACTGC ATATCCGGAAGCTTCTACAGCAGTCTGTCCTGTGGAACTGC < 41bp 1 0.193983104604989 1 0.0467501282691956 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114292033 chr13:114292034 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_44622 0 0 1 0 1 TFDP1 chr13:114291935 3'AG 114291935 Downstream 100bp
chr22 50960234 50960234 1 + C T UCEC 50960214 + 50960194 50960234 41 GTGTGGAGGAGGCTCTGGGACAGAAGCGCAAGAGGAAGGGC GTGTGGAGGAGGCTCTGGGACAGAAGCGCAAGAGGAAGGGT < 41bp 1 0.740285978108965 1 0.318568289279938 experiment 0.519428043782069 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50960214 chr22:50960234 synonymous SNV . 0 41 hm5C_associated_SNPs_44623 0 0 1 0 2 NCAPH2 chr22:50960170 3'AG 50960170 Downstream 65bp
chr22 50960234 50960234 1 + C T UCEC 50960214 + 50960194 50960234 41 GTGTGGAGGAGGCTCTGGGACAGAAGCGCAAGAGGAAGGGC GTGTGGAGGAGGCTCTGGGACAGAAGCGCAAGAGGAAGGGT < 41bp 1 0.740285978108965 1 0.318568289279938 experiment 0.519428043782069 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50960214 chr22:50960234 synonymous SNV . 0 41 hm5C_associated_SNPs_44623 0 0 1 0 2 NCAPH2 chr22:50960277 5'GT 50960277 Upstream 44bp
chr19 12924190 12924190 1 + C A UCEC 12924210 + 12924190 12924230 41 CTACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTT ATACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTT < 41bp 1 0.342444562091138 1 0.0822468996047974 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924210 chr19:12924190 synonymous SNV . 0 1 hm5C_associated_SNPs_44625 0 0 1 0 1 RNASEH2A chr19:12924142 3'AG 12924142 Downstream 49bp
chr11 61507977 61507977 1 + C T UCEC 61507980 + 61507960 61508000 41 TACTTTGCCATCTGGGGCGACAACAAGGCCTTCAATGAGGT TACTTTGCCATCTGGGGTGACAACAAGGCCTTCAATGAGGT < 41bp 1 0.246938903893953 1 0.348295032978058 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507980 chr11:61507977 synonymous SNV . 0 18 hm5C_associated_SNPs_44626 0 0 1 0 2 DAGLA chr11:61507935 3'AG 61507935 Downstream 43bp
chr11 61507977 61507977 1 + C T UCEC 61507980 + 61507960 61508000 41 TACTTTGCCATCTGGGGCGACAACAAGGCCTTCAATGAGGT TACTTTGCCATCTGGGGTGACAACAAGGCCTTCAATGAGGT < 41bp 1 0.246938903893953 1 0.348295032978058 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507980 chr11:61507977 synonymous SNV . 0 18 hm5C_associated_SNPs_44626 0 0 1 0 2 DAGLA chr11:61508064 5'GT 61508064 Upstream 88bp
chr1 26136182 26136182 1 + C T UCEC 26136177 + 26136157 26136197 41 GATCCCCTTCCCCACAGGATCCATGCCGAGTTCCAGCTCAG GATCCCCTTCCCCACAGGATCCATGTCGAGTTCCAGCTCAG < 41bp 1 0.134527134850672 1 0.0310828983783722 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136177 chr1:26136182 nonsynonymous SNV 0.871 5 26 hm5C_associated_SNPs_44628 0 0 1 0 1 SELENON chr1:26136174 3'AG 26136174 Downstream 9bp
chr8 21958387 21958387 1 + G T UCEC 21958371 + 21958351 21958391 41 ACAGAGACCTGGAGGAAGACCCCTACTTCACCGACAGCTTC ACAGAGACCTGGAGGAAGACCCCTACTTCACCGACATCTTC < 41bp 1 0.150189807936035 1 0.0463263988494873 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21958371 chr8:21958387 nonsynonymous SNV 0.440 0 37 hm5C_associated_SNPs_44629 0 0 1 0 2 FAM160B2 chr8:21958355 3'AG 21958355 Downstream 33bp
chr8 21958387 21958387 1 + G T UCEC 21958371 + 21958351 21958391 41 ACAGAGACCTGGAGGAAGACCCCTACTTCACCGACAGCTTC ACAGAGACCTGGAGGAAGACCCCTACTTCACCGACATCTTC < 41bp 1 0.150189807936035 1 0.0463263988494873 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21958371 chr8:21958387 nonsynonymous SNV 0.440 0 37 hm5C_associated_SNPs_44629 0 0 1 0 2 FAM160B2 chr8:21958483 5'GT 21958483 Upstream 97bp
chr1 22332025 22332025 1 + G A UCEC 22332005 + 22331985 22332025 41 GGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGG GGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGA < 41bp 1 0.370941409690478 1 0.397291600704193 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332005 chr1:22332025 nonsynonymous SNV 0.649 3 41 hm5C_associated_SNPs_44631 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 86bp
chr1 22332025 22332025 1 + G A UCEC 22332005 + 22331985 22332025 41 GGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGG GGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGA < 41bp 1 0.370941409690478 1 0.397291600704193 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332005 chr1:22332025 nonsynonymous SNV 0.649 3 41 hm5C_associated_SNPs_44631 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 13bp
chr1 22332025 22332025 1 + G A UCEC 22332019 + 22331999 22332039 41 CGCCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGT CGCCCCCGATTGGGTTGTGACTGCCGACCACTGCATCTCGT < 41bp 1 0.620432299703375 1 0.387043356895447 experiment 0.759135400593249 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332019 chr1:22332025 nonsynonymous SNV 0.649 3 27 hm5C_associated_SNPs_44632 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 86bp
chr1 22332025 22332025 1 + G A UCEC 22332019 + 22331999 22332039 41 CGCCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGT CGCCCCCGATTGGGTTGTGACTGCCGACCACTGCATCTCGT < 41bp 1 0.620432299703375 1 0.387043356895447 experiment 0.759135400593249 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332019 chr1:22332025 nonsynonymous SNV 0.649 3 27 hm5C_associated_SNPs_44632 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 13bp
chr1 22332025 22332025 1 + G A UCEC 22332022 + 22332002 22332042 41 CCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAG CCCCGATTGGGTTGTGACTGCCGACCACTGCATCTCGTGAG < 41bp 1 0.217160756877202 1 0.40448534488678 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332022 chr1:22332025 nonsynonymous SNV 0.649 3 24 hm5C_associated_SNPs_44633 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 86bp
chr1 22332025 22332025 1 + G A UCEC 22332022 + 22332002 22332042 41 CCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAG CCCCGATTGGGTTGTGACTGCCGACCACTGCATCTCGTGAG < 41bp 1 0.217160756877202 1 0.40448534488678 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332022 chr1:22332025 nonsynonymous SNV 0.649 3 24 hm5C_associated_SNPs_44633 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 13bp
chr1 22332025 22332025 1 + G A UCEC 22332023 + 22332003 22332043 41 CCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGT CCCGATTGGGTTGTGACTGCCGACCACTGCATCTCGTGAGT < 41bp 1 0.338184259890968 1 0.200772702693939 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332023 chr1:22332025 nonsynonymous SNV 0.649 3 23 hm5C_associated_SNPs_44634 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 86bp
chr1 22332025 22332025 1 + G A UCEC 22332023 + 22332003 22332043 41 CCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGT CCCGATTGGGTTGTGACTGCCGACCACTGCATCTCGTGAGT < 41bp 1 0.338184259890968 1 0.200772702693939 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332023 chr1:22332025 nonsynonymous SNV 0.649 3 23 hm5C_associated_SNPs_44634 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 13bp
chr1 22332025 22332025 1 + G A UCEC 22332026 + 22332006 22332046 41 GATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGTTCT GATTGGGTTGTGACTGCCGACCACTGCATCTCGTGAGTTCT < 41bp 1 0.187944161413666 1 0.1440389752388 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332026 chr1:22332025 nonsynonymous SNV 0.649 3 20 hm5C_associated_SNPs_44635 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 86bp
chr1 22332025 22332025 1 + G A UCEC 22332026 + 22332006 22332046 41 GATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGTTCT GATTGGGTTGTGACTGCCGACCACTGCATCTCGTGAGTTCT < 41bp 1 0.187944161413666 1 0.1440389752388 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332026 chr1:22332025 nonsynonymous SNV 0.649 3 20 hm5C_associated_SNPs_44635 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 13bp
chr1 22332025 22332025 1 + G A UCEC 22332027 + 22332007 22332047 41 ATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGTTCTC ATTGGGTTGTGACTGCCGACCACTGCATCTCGTGAGTTCTC < 41bp 1 0.374710183245459 1 0.319517433643341 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332027 chr1:22332025 nonsynonymous SNV 0.649 3 19 hm5C_associated_SNPs_44636 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 86bp
chr1 22332025 22332025 1 + G A UCEC 22332027 + 22332007 22332047 41 ATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGTTCTC ATTGGGTTGTGACTGCCGACCACTGCATCTCGTGAGTTCTC < 41bp 1 0.374710183245459 1 0.319517433643341 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332027 chr1:22332025 nonsynonymous SNV 0.649 3 19 hm5C_associated_SNPs_44636 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 13bp
chr1 22332025 22332025 1 + G A UCEC 22332032 + 22332012 22332052 41 GTTGTGACTGCCGGCCACTGCATCTCGTGAGTTCTCTACCC GTTGTGACTGCCGACCACTGCATCTCGTGAGTTCTCTACCC < 41bp 1 0.345115434945649 1 0.125527381896973 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332032 chr1:22332025 nonsynonymous SNV 0.649 3 14 hm5C_associated_SNPs_44637 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 86bp
chr1 22332025 22332025 1 + G A UCEC 22332032 + 22332012 22332052 41 GTTGTGACTGCCGGCCACTGCATCTCGTGAGTTCTCTACCC GTTGTGACTGCCGACCACTGCATCTCGTGAGTTCTCTACCC < 41bp 1 0.345115434945649 1 0.125527381896973 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332032 chr1:22332025 nonsynonymous SNV 0.649 3 14 hm5C_associated_SNPs_44637 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 13bp
chr1 22332025 22332025 1 + G A UCEC 22332035 + 22332015 22332055 41 GTGACTGCCGGCCACTGCATCTCGTGAGTTCTCTACCCTGT GTGACTGCCGACCACTGCATCTCGTGAGTTCTCTACCCTGT < 41bp 1 0.733969886945458 1 0.166558444499969 experiment 0.532060226109084 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332035 chr1:22332025 nonsynonymous SNV 0.649 3 11 hm5C_associated_SNPs_44638 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 86bp
chr1 22332025 22332025 1 + G A UCEC 22332035 + 22332015 22332055 41 GTGACTGCCGGCCACTGCATCTCGTGAGTTCTCTACCCTGT GTGACTGCCGACCACTGCATCTCGTGAGTTCTCTACCCTGT < 41bp 1 0.733969886945458 1 0.166558444499969 experiment 0.532060226109084 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332035 chr1:22332025 nonsynonymous SNV 0.649 3 11 hm5C_associated_SNPs_44638 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 13bp
chr2 30756159 30756159 1 + C A UCEC 30756147 + 30756127 30756167 41 TCAGATTGGAGAAAATTTGCCTCAAAGCGAGTCTCAAAGGT TCAGATTGGAGAAAATTTGCCTCAAAGCGAGTATCAAAGGT < 41bp 1 0.66553699221751 1 0.501719176769257 experiment 0.668926015564981 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LCLAT1 ENSG00000172954 CDS Human protein_coding chr2:30756147 chr2:30756159 nonsynonymous SNV 0.995 4 33 hm5C_associated_SNPs_44639 0 0 1 0 1 LCLAT1 chr2:30756180 5'GT 30756180 Upstream 22bp
chr14 69704349 69704349 1 + C T UCEC 69704365 + 69704345 69704385 41 ACCACAACTCCCACGATGTGCTGCTGCTCTGCACCTCCTGC ACCATAACTCCCACGATGTGCTGCTGCTCTGCACCTCCTGC < 41bp 1 0.526092572036509 1 0.108944118022919 experiment 0.947814855926982 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EXD2 ENSG00000081177 CDS Human protein_coding chr14:69704365 chr14:69704349 synonymous SNV . 0 5 hm5C_associated_SNPs_44640 0 0 1 0 1 EXD2 chr14:69704292 3'AG 69704292 Downstream 58bp
chr1 3342243 3342243 1 + G A UCEC 3342250 + 3342230 3342270 41 AAGTGCCACCTGTGCAACCGCTGCTTCGGGCAGCAGACCAA AAGTGCCACCTGTACAACCGCTGCTTCGGGCAGCAGACCAA < 41bp 1 0.273388869235876 1 0.153393894433975 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3342250 chr1:3342243 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_44641 0 0 0 0 2 PRDM16 chr1:3342145 3'AG 3342145 Downstream 99bp
chr1 3342243 3342243 1 + G A UCEC 3342250 + 3342230 3342270 41 AAGTGCCACCTGTGCAACCGCTGCTTCGGGCAGCAGACCAA AAGTGCCACCTGTACAACCGCTGCTTCGGGCAGCAGACCAA < 41bp 1 0.273388869235876 1 0.153393894433975 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3342250 chr1:3342243 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_44641 0 0 0 0 2 PRDM16 chr1:3342314 5'GT 3342314 Upstream 72bp
chr7 130021497 130021497 1 + C T UCEC 130021489 + 130021469 130021509 41 AGCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCC AGCTGGACTTCTGGCGGGGGCCTGCCCATCCTGGCTCCCCC < 41bp 1 0.125831772345907 1 0.192230433225632 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021489 chr7:130021497 synonymous SNV . 0 29 hm5C_associated_SNPs_44642 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 27bp
chr7 130021497 130021497 1 + C T UCEC 130021489 + 130021469 130021509 41 AGCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCC AGCTGGACTTCTGGCGGGGGCCTGCCCATCCTGGCTCCCCC < 41bp 1 0.125831772345907 1 0.192230433225632 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021489 chr7:130021497 synonymous SNV . 0 29 hm5C_associated_SNPs_44642 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 25bp
chr7 130021497 130021497 1 + C T UCEC 130021490 + 130021470 130021510 41 GCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCA GCTGGACTTCTGGCGGGGGCCTGCCCATCCTGGCTCCCCCA < 41bp 1 0.524122420540294 1 0.264239907264709 experiment 0.951755158919412 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021490 chr7:130021497 synonymous SNV . 0 28 hm5C_associated_SNPs_44643 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 27bp
chr7 130021497 130021497 1 + C T UCEC 130021490 + 130021470 130021510 41 GCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCA GCTGGACTTCTGGCGGGGGCCTGCCCATCCTGGCTCCCCCA < 41bp 1 0.524122420540294 1 0.264239907264709 experiment 0.951755158919412 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021490 chr7:130021497 synonymous SNV . 0 28 hm5C_associated_SNPs_44643 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 25bp
chr7 130021497 130021497 1 + C T UCEC 130021493 + 130021473 130021513 41 GGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCG GGACTTCTGGCGGGGGCCTGCCCATCCTGGCTCCCCCATCG < 41bp 1 0.404414861411261 1 0.219224065542221 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021493 chr7:130021497 synonymous SNV . 0 25 hm5C_associated_SNPs_44644 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 27bp
chr7 130021497 130021497 1 + C T UCEC 130021493 + 130021473 130021513 41 GGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCG GGACTTCTGGCGGGGGCCTGCCCATCCTGGCTCCCCCATCG < 41bp 1 0.404414861411261 1 0.219224065542221 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021493 chr7:130021497 synonymous SNV . 0 25 hm5C_associated_SNPs_44644 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 25bp
chr7 130021497 130021497 1 + C T UCEC 130021494 + 130021474 130021514 41 GACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGA GACTTCTGGCGGGGGCCTGCCCATCCTGGCTCCCCCATCGA < 41bp 1 0.173158184249016 1 0.105853855609894 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021494 chr7:130021497 synonymous SNV . 0 24 hm5C_associated_SNPs_44645 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 27bp
chr7 130021497 130021497 1 + C T UCEC 130021494 + 130021474 130021514 41 GACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGA GACTTCTGGCGGGGGCCTGCCCATCCTGGCTCCCCCATCGA < 41bp 1 0.173158184249016 1 0.105853855609894 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021494 chr7:130021497 synonymous SNV . 0 24 hm5C_associated_SNPs_44645 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 25bp
chr7 130021497 130021497 1 + C T UCEC 130021495 + 130021475 130021515 41 ACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGAC ACTTCTGGCGGGGGCCTGCCCATCCTGGCTCCCCCATCGAC < 41bp 1 0.524757622478293 1 0.137002855539322 experiment 0.950484755043413 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021495 chr7:130021497 synonymous SNV . 0 23 hm5C_associated_SNPs_44646 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 27bp
chr7 130021497 130021497 1 + C T UCEC 130021495 + 130021475 130021515 41 ACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGAC ACTTCTGGCGGGGGCCTGCCCATCCTGGCTCCCCCATCGAC < 41bp 1 0.524757622478293 1 0.137002855539322 experiment 0.950484755043413 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021495 chr7:130021497 synonymous SNV . 0 23 hm5C_associated_SNPs_44646 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 25bp
chr7 130021497 130021497 1 + C T UCEC 130021498 + 130021478 130021518 41 TCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC TCTGGCGGGGGCCTGCCCATCCTGGCTCCCCCATCGACGTC < 41bp 1 0.708834326240732 1 0.263561904430389 experiment 0.582331347518535 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021498 chr7:130021497 synonymous SNV . 0 20 hm5C_associated_SNPs_44647 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 27bp
chr7 130021497 130021497 1 + C T UCEC 130021498 + 130021478 130021518 41 TCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC TCTGGCGGGGGCCTGCCCATCCTGGCTCCCCCATCGACGTC < 41bp 1 0.708834326240732 1 0.263561904430389 experiment 0.582331347518535 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021498 chr7:130021497 synonymous SNV . 0 20 hm5C_associated_SNPs_44647 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 25bp
chr7 130021497 130021497 1 + C T UCEC 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT CGGGGGCCTGCCCATCCTGGCTCCCCCATCGACGTCCGAGT < 41bp 1 0.199447492251019 1 0.0815363526344299 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021497 synonymous SNV . 0 15 hm5C_associated_SNPs_44648 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 27bp
chr7 130021497 130021497 1 + C T UCEC 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT CGGGGGCCTGCCCATCCTGGCTCCCCCATCGACGTCCGAGT < 41bp 1 0.199447492251019 1 0.0815363526344299 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021497 synonymous SNV . 0 15 hm5C_associated_SNPs_44648 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 25bp
chr7 130021497 130021497 1 + C T UCEC 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC GGGGCCTGCCCATCCTGGCTCCCCCATCGACGTCCGAGTGC < 41bp 1 0.205809146699792 1 0.0602035820484161 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021497 synonymous SNV . 0 13 hm5C_associated_SNPs_44649 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 27bp
chr7 130021497 130021497 1 + C T UCEC 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC GGGGCCTGCCCATCCTGGCTCCCCCATCGACGTCCGAGTGC < 41bp 1 0.205809146699792 1 0.0602035820484161 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021497 synonymous SNV . 0 13 hm5C_associated_SNPs_44649 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 25bp
chr7 130021497 130021497 1 + C T UCEC 130021506 + 130021486 130021526 41 GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC GGGCCTGCCCATCCTGGCTCCCCCATCGACGTCCGAGTGCC < 41bp 1 0.404086468195063 1 0.284346163272858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021506 chr7:130021497 synonymous SNV . 0 12 hm5C_associated_SNPs_44650 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 27bp
chr7 130021497 130021497 1 + C T UCEC 130021506 + 130021486 130021526 41 GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC GGGCCTGCCCATCCTGGCTCCCCCATCGACGTCCGAGTGCC < 41bp 1 0.404086468195063 1 0.284346163272858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021506 chr7:130021497 synonymous SNV . 0 12 hm5C_associated_SNPs_44650 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 25bp
chr7 130021497 130021497 1 + C T UCEC 130021507 + 130021487 130021527 41 GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC GGCCTGCCCATCCTGGCTCCCCCATCGACGTCCGAGTGCCC < 41bp 1 0.101418666869969 1 0.0679097473621368 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021507 chr7:130021497 synonymous SNV . 0 11 hm5C_associated_SNPs_44651 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 27bp
chr7 130021497 130021497 1 + C T UCEC 130021507 + 130021487 130021527 41 GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC GGCCTGCCCATCCTGGCTCCCCCATCGACGTCCGAGTGCCC < 41bp 1 0.101418666869969 1 0.0679097473621368 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021507 chr7:130021497 synonymous SNV . 0 11 hm5C_associated_SNPs_44651 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 25bp
chr7 130021497 130021497 1 + C T UCEC 130021508 + 130021488 130021528 41 GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT GCCTGCCCATCCTGGCTCCCCCATCGACGTCCGAGTGCCCT < 41bp 1 0.0552403264618166 1 0.341299474239349 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021508 chr7:130021497 synonymous SNV . 0 10 hm5C_associated_SNPs_44652 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 27bp
chr7 130021497 130021497 1 + C T UCEC 130021508 + 130021488 130021528 41 GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT GCCTGCCCATCCTGGCTCCCCCATCGACGTCCGAGTGCCCT < 41bp 1 0.0552403264618166 1 0.341299474239349 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021508 chr7:130021497 synonymous SNV . 0 10 hm5C_associated_SNPs_44652 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 25bp
chr7 130021497 130021497 1 + C T UCEC 130021509 + 130021489 130021529 41 CCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT CCTGCCCATCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT < 41bp 1 0.412586244819135 1 0.121734976768494 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021509 chr7:130021497 synonymous SNV . 0 9 hm5C_associated_SNPs_44653 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 27bp
chr7 130021497 130021497 1 + C T UCEC 130021509 + 130021489 130021529 41 CCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT CCTGCCCATCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT < 41bp 1 0.412586244819135 1 0.121734976768494 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021509 chr7:130021497 synonymous SNV . 0 9 hm5C_associated_SNPs_44653 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 25bp
chr7 130021497 130021497 1 + C T UCEC 130021515 + 130021495 130021535 41 CACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAG CATCCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAG < 41bp 1 0.470214627347293 1 0.453294694423676 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021515 chr7:130021497 synonymous SNV . 0 3 hm5C_associated_SNPs_44654 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 27bp
chr7 130021497 130021497 1 + C T UCEC 130021515 + 130021495 130021535 41 CACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAG CATCCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAG < 41bp 1 0.470214627347293 1 0.453294694423676 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021515 chr7:130021497 synonymous SNV . 0 3 hm5C_associated_SNPs_44654 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 25bp
chr12 6965313 6965313 1 + G A UCEC 6965312 + 6965292 6965332 41 TGCCTGACATTGTCAGAGATCGGGTATGACTGCCCCCTATG TGCCTGACATTGTCAGAGATCAGGTATGACTGCCCCCTATG < 41bp 1 0.778665782397221 1 0.860447883605957 experiment 0.442668435205559 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control USP5 ENSG00000111667 CDS Human protein_coding chr12:6965312 chr12:6965313 nonsynonymous SNV 0.992 1 22 hm5C_associated_SNPs_44655 0 0 1 0 1 USP5 chr12:6965314 5'GT 6965314 Upstream 2bp
chr12 117426552 117426552 1 + G A UCEC 117426534 + 117426514 117426554 41 CAGTAGCCGCTGCTGGAGATCTGATGTACCTGCTCAAAGCC CAGTAGCCGCTGCTGGAGATCTGATGTACCTGCTCAAAACC < 41bp 1 0.476502435491243 1 0.239121288061142 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117426534 chr12:117426552 nonsynonymous SNV 0.937 1 39 hm5C_associated_SNPs_44656 0 0 0 0 1 FBXW8 chr12:117426468 3'AG 117426468 Downstream 85bp
chr11 63743745 63743745 1 + G T UCEC 63743738 + 63743718 63743758 41 TCCTGCTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCT TCCTGCTTCGTGACCTTCCTCCTGCCATCGGGCTGGATCCT < 41bp 1 0.162230895694856 1 0.444667547941208 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control COX8A ENSG00000176340 CDS Human protein_coding chr11:63743738 chr11:63743745 nonsynonymous SNV 0.504 0 28 hm5C_associated_SNPs_44658 0 0 1 0 1 COX8A chr11:63743697 3'AG 63743697 Downstream 49bp
chr11 63743745 63743745 1 + G T UCEC 63743739 + 63743719 63743759 41 CCTGCTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCTG CCTGCTTCGTGACCTTCCTCCTGCCATCGGGCTGGATCCTG < 41bp 1 0.540909676777694 1 0.145775526762009 experiment 0.918180646444611 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COX8A ENSG00000176340 CDS Human protein_coding chr11:63743739 chr11:63743745 nonsynonymous SNV 0.504 0 27 hm5C_associated_SNPs_44659 0 0 1 0 1 COX8A chr11:63743697 3'AG 63743697 Downstream 49bp
chr7 55259423 55259423 1 + C A UCEC 55259432 + 55259412 55259452 41 GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGA GGCATGAACTAATTGGAGGACCGTCGCTTGGTGCACCGCGA < 41bp 1 0.0647841559303689 1 0.259965658187866 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55259432 chr7:55259423 stopgain 1.000 1 12 hm5C_associated_SNPs_44660 0 0 1 0 1 EGFR chr7:55259412 3'AG 55259412 Downstream 12bp
chr22 51143508 51143508 1 + C T UCEC 51143513 + 51143493 51143533 41 GAAGCCAGAAGAGGACGGGGCTCGGCGCAGAGGTGAGGGGT GAAGCCAGAAGAGGATGGGGCTCGGCGCAGAGGTGAGGGGT < 41bp 1 0.323500907112939 1 0.782187700271606 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51143513 chr22:51143508 synonymous SNV . 0 16 hm5C_associated_SNPs_44661 0 0 1 0 1 SHANK3 chr22:51143524 5'GT 51143524 Upstream 17bp
chr1 32645955 32645955 1 + C A UCEC 32645938 + 32645918 32645958 41 CTTCTCCTGACCCAGCATCGCTCATCACAATGAAGAACCAA CTTCTCCTGACCCAGCATCGCTCATCACAATGAAGAAACAA < 41bp 1 0.288113521466186 1 0.042214035987854 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TXLNA ENSG00000084652 CDS Human protein_coding chr1:32645938 chr1:32645955 nonsynonymous SNV 0.998 1 38 hm5C_associated_SNPs_44664 0 0 1 0 1 TXLNA chr1:32645915 3'AG 32645915 Downstream 41bp
chr2 100013255 100013255 1 + T G UCEC 100013261 + 100013241 100013281 41 CTGCAAGATAAAAATCCTCCCTCAGTACATTTTTAATTCTC CTGCAAGATAAAAAGCCTCCCTCAGTACATTTTTAATTCTC < 41bp 1 0.524835405505534 1 0.0757907629013062 experiment 0.950329188988931 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:100013261 chr2:100013255 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_44666 0 0 1 0 1 EIF5B chr2:100013223 3'AG 100013223 Downstream 33bp
chr10 103917957 103917957 1 + C T UCEC 103917963 + 103917943 103917983 41 AGCTCAGACTAAAGCCCCTCCCAAACCAGGTACTGTTTCTG AGCTCAGACTAAAGTCCCTCCCAAACCAGGTACTGTTTCTG < 41bp 1 0.17264068942965 1 0.410084009170532 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103917963 chr10:103917957 nonsynonymous SNV 0.426 0 15 hm5C_associated_SNPs_44667 0 0 1 0 1 NOLC1 chr10:103917971 5'GT 103917971 Upstream 15bp
chr1 236711387 236711387 1 + T A UCEC 236711377 + 236711357 236711397 41 GGCGTACACAGCCTGGAGTACAAACACAGATTTAAAGAGCT GGCGTACACAGCCTGGAGTACAAACACAGAATTAAAGAGCT < 41bp 1 0.100389816397014 1 0.256597340106964 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LGALS8 ENSG00000116977 CDS Human protein_coding chr1:236711377 chr1:236711387 nonsynonymous SNV 0.993 2 31 hm5C_associated_SNPs_44668 0 0 1 1 1 LGALS8 chr1:236711312 3'AG 236711312 Downstream 76bp
chr9 101765797 101765797 1 + G T UCEC 101765812 + 101765792 101765832 41 GCAGAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTC GCAGATGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTC < 41bp 1 0.721434487109529 1 0.466603815555573 experiment 0.557131025780943 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765812 chr9:101765797 nonsynonymous SNV 0.035 3 6 hm5C_associated_SNPs_44669 0 0 0 0 2 COL15A1 chr9:101765735 3'AG 101765735 Downstream 63bp
chr9 101765797 101765797 1 + G T UCEC 101765812 + 101765792 101765832 41 GCAGAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTC GCAGATGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTC < 41bp 1 0.721434487109529 1 0.466603815555573 experiment 0.557131025780943 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765812 chr9:101765797 nonsynonymous SNV 0.035 3 6 hm5C_associated_SNPs_44669 0 0 0 0 2 COL15A1 chr9:101765869 5'GT 101765869 Upstream 73bp
chr9 101765797 101765797 1 + G T UCEC 101765814 + 101765794 101765834 41 AGAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTCTA AGATGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTCTA < 41bp 1 0.7235173389725 1 0.938406646251678 experiment 0.552965322054999 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765814 chr9:101765797 nonsynonymous SNV 0.035 3 4 hm5C_associated_SNPs_44670 0 0 0 0 2 COL15A1 chr9:101765735 3'AG 101765735 Downstream 63bp
chr9 101765797 101765797 1 + G T UCEC 101765814 + 101765794 101765834 41 AGAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTCTA AGATGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTCTA < 41bp 1 0.7235173389725 1 0.938406646251678 experiment 0.552965322054999 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765814 chr9:101765797 nonsynonymous SNV 0.035 3 4 hm5C_associated_SNPs_44670 0 0 0 0 2 COL15A1 chr9:101765869 5'GT 101765869 Upstream 73bp
chr5 158695986 158695986 1 + A C UCEC 158695994 + 158695974 158696014 41 CACACTTTCAGAAGATGATACTGTGCTCGATCTCAAACAGT CACACTTTCAGACGATGATACTGTGCTCGATCTCAAACAGT < 41bp 1 0.347221961144508 1 0.0924490094184875 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBLCP1 ENSG00000164332 CDS Human protein_coding chr5:158695994 chr5:158695986 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_44674 0 0 1 0 1 UBLCP1 chr5:158696077 5'GT 158696077 Upstream 92bp
chr14 23944953 23944953 1 + G A UCEC 23944972 + 23944952 23944992 41 CGTTTTAAGCCTCATCCCAGCAATATGATGAGCAAGGTAAG CATTTTAAGCCTCATCCCAGCAATATGATGAGCAAGGTAAG < 41bp 1 0.308534353611513 1 0.382488876581192 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NGDN ENSG00000129460 CDS Human protein_coding chr14:23944972 chr14:23944953 nonsynonymous SNV 0.995 1 2 hm5C_associated_SNPs_44675 0 0 1 0 2 NGDN chr14:23944935 3'AG 23944935 Downstream 19bp
chr14 23944953 23944953 1 + G A UCEC 23944972 + 23944952 23944992 41 CGTTTTAAGCCTCATCCCAGCAATATGATGAGCAAGGTAAG CATTTTAAGCCTCATCCCAGCAATATGATGAGCAAGGTAAG < 41bp 1 0.308534353611513 1 0.382488876581192 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NGDN ENSG00000129460 CDS Human protein_coding chr14:23944972 chr14:23944953 nonsynonymous SNV 0.995 1 2 hm5C_associated_SNPs_44675 0 0 1 0 2 NGDN chr14:23944987 5'GT 23944987 Upstream 35bp
chrX 21995200 21995200 1 + A G UCEC 21995205 + 21995185 21995225 41 ACCCATAGTGCGAGGAGGAGCCATCGACAGATACTGGCCCA ACCCATAGTGCGAGGGGGAGCCATCGACAGATACTGGCCCA < 41bp 1 0.178765521912742 1 0.488583564758301 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMS ENSG00000102172 CDS Human protein_coding chrX:21995205 chrX:21995200 synonymous SNV . 0 16 hm5C_associated_SNPs_44676 0 0 1 0 1 SMS chrX:21995179 3'AG 21995179 Downstream 22bp
chr16 22335844 22335844 1 + G T UCEC 22335864 + 22335844 22335884 41 GGACTTCCTGGAGCACATGGCCGTGGTGAGGATCAACAAAG TGACTTCCTGGAGCACATGGCCGTGGTGAGGATCAACAAAG < 41bp 1 0.242242749647253 1 0.151188939809799 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22335864 chr16:22335844 nonsynonymous SNV 0.997 2 1 hm5C_associated_SNPs_44677 0 0 1 0 1 POLR3E chr16:22335824 3'AG 22335824 Downstream 21bp
chr2 241514991 241514991 1 + C T UCEC 241514997 + 241514977 241515017 41 TCCTGAGCTTCTTCCCGGAGCTGAAGGAGCAGAGCGTGGAC TCCTGAGCTTCTTCTCGGAGCTGAAGGAGCAGAGCGTGGAC < 41bp 1 0.588679712069207 1 0.40302562713623 experiment 0.822640575861587 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241514997 chr2:241514991 nonsynonymous SNV 0.998 4 15 hm5C_associated_SNPs_44679 0 0 1 0 1 RNPEPL1 chr2:241515027 5'GT 241515027 Upstream 37bp
chr1 228470924 228470924 1 + C T UCEC 228470936 + 228470916 228470956 41 CTCAAGGACGCGGGCGAGTACACGTGTGAGGTGGAGGCTTC CTCAAGGATGCGGGCGAGTACACGTGTGAGGTGGAGGCTTC < 41bp 1 0.213306609654667 1 0.273010730743408 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228470936 chr1:228470924 synonymous SNV . 0 9 hm5C_associated_SNPs_44680 0 0 0 0 1 OBSCN chr1:228470985 5'GT 228470985 Upstream 62bp
chr10 1118121 1118121 1 + C T UCEC 1118127 + 1118107 1118147 41 AAGCGCAAGTTGTTCGACTGCTCGCCAAACAAAACAGAAGC AAGCGCAAGTTGTTTGACTGCTCGCCAAACAAAACAGAAGC < 41bp 1 0.274868307078348 1 0.654619634151459 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR37 ENSG00000047056 CDS Human protein_coding chr10:1118127 chr10:1118121 nonsynonymous SNV 0.938 1 15 hm5C_associated_SNPs_44681 0 0 1 1 1 WDR37 chr10:1118056 3'AG 1118056 Downstream 66bp
chr1 228470927 228470927 1 + G A UCEC 228470936 + 228470916 228470956 41 CTCAAGGACGCGGGCGAGTACACGTGTGAGGTGGAGGCTTC CTCAAGGACGCAGGCGAGTACACGTGTGAGGTGGAGGCTTC < 41bp 1 0.179910402558263 1 0.306504786014557 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228470936 chr1:228470927 synonymous SNV . 0 12 hm5C_associated_SNPs_44682 0 0 0 0 1 OBSCN chr1:228470985 5'GT 228470985 Upstream 59bp
chr19 16296498 16296498 1 + G T UCEC 16296488 + 16296468 16296508 41 ACTCCTGGAAGCAATGGGAACGAGCAAAAAGAACGAGGAGG ACTCCTGGAAGCAATGGGAACGAGCAAAAATAACGAGGAGG < 41bp 1 0.513527746415648 1 0.593364238739014 experiment 0.972944507168704 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FAM32A ENSG00000105058 CDS Human protein_coding chr19:16296488 chr19:16296498 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_44683 0 0 1 0 2 FAM32A chr19:16296435 3'AG 16296435 Downstream 64bp
chr19 16296498 16296498 1 + G T UCEC 16296488 + 16296468 16296508 41 ACTCCTGGAAGCAATGGGAACGAGCAAAAAGAACGAGGAGG ACTCCTGGAAGCAATGGGAACGAGCAAAAATAACGAGGAGG < 41bp 1 0.513527746415648 1 0.593364238739014 experiment 0.972944507168704 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FAM32A ENSG00000105058 CDS Human protein_coding chr19:16296488 chr19:16296498 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_44683 0 0 1 0 2 FAM32A chr19:16296576 5'GT 16296576 Upstream 79bp
chr2 85598248 85598248 1 + G A UCEC 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTCGCCACCCTCCGACACTACCTCT < 41bp 1 0.265234242120189 1 0.263414680957794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598248 nonsynonymous SNV 0.509 2 23 hm5C_associated_SNPs_44684 0 0 0 12 1 ELMOD3 chr2:85598209 3'AG 85598209 Downstream 40bp
chr2 85598248 85598248 1 + G A UCEC 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGGCTCGCCACCCTCCGACACTACCTCTTCGGG < 41bp 1 0.793462711848868 1 0.77433055639267 experiment 0.413074576302264 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598248 nonsynonymous SNV 0.509 2 18 hm5C_associated_SNPs_44685 0 0 0 12 1 ELMOD3 chr2:85598209 3'AG 85598209 Downstream 40bp
chr16 78143698 78143698 1 + G T UCEC 78143695 + 78143675 78143715 41 ATTTGCCATACGGATGGGAACAAGAAACTGATGAGAACGGA ATTTGCCATACGGATGGGAACAATAAACTGATGAGAACGGA < 41bp 1 0.183271267753626 1 0.359098464250565 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WWOX ENSG00000186153 CDS Human protein_coding chr16:78143695 chr16:78143698 stopgain 0.999 1 24 hm5C_associated_SNPs_44686 0 0 1 0 2 WWOX chr16:78143675 3'AG 78143675 Downstream 24bp
chr16 78143698 78143698 1 + G T UCEC 78143695 + 78143675 78143715 41 ATTTGCCATACGGATGGGAACAAGAAACTGATGAGAACGGA ATTTGCCATACGGATGGGAACAATAAACTGATGAGAACGGA < 41bp 1 0.183271267753626 1 0.359098464250565 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WWOX ENSG00000186153 CDS Human protein_coding chr16:78143695 chr16:78143698 stopgain 0.999 1 24 hm5C_associated_SNPs_44686 0 0 1 0 2 WWOX chr16:78143732 5'GT 78143732 Upstream 35bp
chr22 18979472 18979472 1 + T C UCEC 18979466 + 18979446 18979486 41 AGATGGAGAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAAC AGATGGAGAAGCGAACCAAGCCTGTCCGTGTGTTCTGGAAC < 41bp 1 0.0957703461743179 1 0.0562752187252045 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979466 chr22:18979472 . . 0 27 hm5C_associated_SNPs_44687 0 0 1 0 1 DGCR5 chr22:18979530 5'GT 18979530 Upstream 59bp
chr11 125475547 125475547 1 + C T UCEC 125475549 + 125475529 125475569 41 GCCATCTTTTGCATGCTACTCACCTACTACATGTGGATCAA GCCATCTTTTGCATGCTATTCACCTACTACATGTGGATCAA < 41bp 1 0.605317730827758 1 0.44750115275383 experiment 0.789364538344484 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STT3A ENSG00000134910 CDS Human protein_coding chr11:125475549 chr11:125475547 nonsynonymous SNV 0.994 1 19 hm5C_associated_SNPs_44688 0 0 1 0 2 STT3A chr11:125475524 3'AG 125475524 Downstream 24bp
chr11 125475547 125475547 1 + C T UCEC 125475549 + 125475529 125475569 41 GCCATCTTTTGCATGCTACTCACCTACTACATGTGGATCAA GCCATCTTTTGCATGCTATTCACCTACTACATGTGGATCAA < 41bp 1 0.605317730827758 1 0.44750115275383 experiment 0.789364538344484 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STT3A ENSG00000134910 CDS Human protein_coding chr11:125475549 chr11:125475547 nonsynonymous SNV 0.994 1 19 hm5C_associated_SNPs_44688 0 0 1 0 2 STT3A chr11:125475630 5'GT 125475630 Upstream 84bp
chr1 153713790 153713790 1 + A C UCEC 153713778 + 153713758 153713798 41 CAGGTGTGCAAAGGCCTCCCCCAGCATGAAGAAATCTGCCT CAGGTGTGCAAAGGCCTCCCCCAGCATGAAGACATCTGCCT < 41bp 1 0.164893378699213 1 0.201267093420029 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control INTS3 ENSG00000143624 CDS Human protein_coding chr1:153713778 chr1:153713790 nonsynonymous SNV 0.996 2 33 hm5C_associated_SNPs_44690 0 0 1 0 2 INTS3 chr1:153713761 3'AG 153713761 Downstream 30bp
chr1 153713790 153713790 1 + A C UCEC 153713778 + 153713758 153713798 41 CAGGTGTGCAAAGGCCTCCCCCAGCATGAAGAAATCTGCCT CAGGTGTGCAAAGGCCTCCCCCAGCATGAAGACATCTGCCT < 41bp 1 0.164893378699213 1 0.201267093420029 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control INTS3 ENSG00000143624 CDS Human protein_coding chr1:153713778 chr1:153713790 nonsynonymous SNV 0.996 2 33 hm5C_associated_SNPs_44690 0 0 1 0 2 INTS3 chr1:153713844 5'GT 153713844 Upstream 55bp
chr9 135932281 135932281 1 + G T UCEC 135932293 + 135932273 135932313 41 GACCATCCGCTCCAAGAGGCCTGGTAAGAGCCGCTTGGGGT GACCATCCTCTCCAAGAGGCCTGGTAAGAGCCGCTTGGGGT < 41bp 1 0.514528972583537 1 0.103738516569138 experiment 0.970942054832926 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135932293 chr9:135932281 nonsynonymous SNV 0.998 4 9 hm5C_associated_SNPs_44691 0 0 1 0 1 GTF3C5 chr9:135932295 5'GT 135932295 Upstream 15bp
chr14 100950434 100950434 1 + G T UCEC 100950419 + 100950399 100950439 41 AACATCTTTTTATGTGGAGGCTTCAGCTCTGAAATGAAAGC AACATCTTTTTATGTGGAGGCTTCAGCTCTGAAATTAAAGC < 41bp 1 0.148289952875199 1 0.387586295604706 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR25 ENSG00000176473 CDS Human protein_coding chr14:100950419 chr14:100950434 nonsynonymous SNV 0.993 0 36 hm5C_associated_SNPs_44692 0 0 0 0 1 WDR25 chr14:100950461 5'GT 100950461 Upstream 28bp
chr17 45757974 45757974 1 + A C UCEC 45757956 + 45757936 45757976 41 ATGAATTGTTAACTGAAGGGCGGAGATCGAAGACTAACAAA ATGAATTGTTAACTGAAGGGCGGAGATCGAAGACTAACCAA < 41bp 1 0.459861026124228 1 0.301657974720001 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45757956 chr17:45757974 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_44693 0 0 1 0 1 KPNB1 chr17:45758035 5'GT 45758035 Upstream 62bp
chr19 45912975 45912975 1 - C T UCEC 45912980 - 45912960 45913000 41 TTCTCCCTCCCATCCAGGCCCGGAGGCTGTTTGATGTCCTG TTCTCCCTCCCATCCAGGCCCGGAGACTGTTTGATGTCCTG < 41bp 1 0.332728806721488 1 0.296015918254852 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ERCC1 ENSG00000012061 CDS Human protein_coding chr19:45912980 chr19:45912975 nonsynonymous SNV 0.995 0 26 hm5C_associated_SNPs_44694 0 0 0 0 1 ERCC1 chr19:45912983 3'AG 45912983 Downstream 9bp
chr4 187122437 187122437 1 + G A UCEC 187122449 + 187122429 187122469 41 CTGATGACGAAGGGAACAGGCTAAGTCATGAAGATATTCGA CTGATGACAAAGGGAACAGGCTAAGTCATGAAGATATTCGA < 41bp 1 0.372117524299551 1 0.0866914987564087 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CYP4V2 ENSG00000145476 CDS Human protein_coding chr4:187122449 chr4:187122437 nonsynonymous SNV 0.922 0 9 hm5C_associated_SNPs_44695 0 0 1 0 1 CYP4V2 chr4:187122496 5'GT 187122496 Upstream 60bp
chr20 30526965 30526965 1 + G A UCEC 30526975 + 30526955 30526995 41 AGGGAGAAGCGAGTCGGGGGCTTTGACCTCATGTGGAATGA AGGGAGAAGCAAGTCGGGGGCTTTGACCTCATGTGGAATGA < 41bp 1 0.199404727840623 1 0.102158784866333 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30526975 chr20:30526965 nonsynonymous SNV 0.842 1 11 hm5C_associated_SNPs_44696 0 0 0 0 1 TTLL9 chr20:30526945 3'AG 30526945 Downstream 21bp
chr7 69599531 69599531 1 + C T UCEC 69599551 + 69599531 69599571 41 CCTTCCAGCTTGGGAACAGGCTACTTCGTAAGTCTATCTCA TCTTCCAGCTTGGGAACAGGCTACTTCGTAAGTCTATCTCA < 41bp 1 0.206848973055069 1 0.0647813379764557 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69599551 chr7:69599531 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_44697 0 0 1 0 1 AUTS2 chr7:69599557 5'GT 69599557 Upstream 27bp
chr6 133137686 133137686 1 + A G UCEC 133137682 + 133137662 133137702 41 TGGAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAG TGGAGGCCCTTTGTGCTGAACACCGAATCAACCTAATTAAG < 41bp 1 0.660117349623238 1 0.0437493622303009 experiment 0.679765300753524 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS12 ENSG00000112306 CDS Human protein_coding chr6:133137682 chr6:133137686 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_44698 0 0 1 0 2 RPS12 chr6:133137600 3'AG 133137600 Downstream 87bp
chr6 133137686 133137686 1 + A G UCEC 133137682 + 133137662 133137702 41 TGGAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAG TGGAGGCCCTTTGTGCTGAACACCGAATCAACCTAATTAAG < 41bp 1 0.660117349623238 1 0.0437493622303009 experiment 0.679765300753524 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS12 ENSG00000112306 CDS Human protein_coding chr6:133137682 chr6:133137686 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_44698 0 0 1 0 2 RPS12 chr6:133137702 5'GT 133137702 Upstream 17bp
chr6 133137686 133137686 1 + A G UCEC 133137684 + 133137664 133137704 41 GAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAGGT GAGGCCCTTTGTGCTGAACACCGAATCAACCTAATTAAGGT < 41bp 1 0.598710770537013 1 0.491567313671112 experiment 0.802578458925973 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS12 ENSG00000112306 CDS Human protein_coding chr6:133137684 chr6:133137686 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_44699 0 0 1 0 2 RPS12 chr6:133137600 3'AG 133137600 Downstream 87bp
chr6 133137686 133137686 1 + A G UCEC 133137684 + 133137664 133137704 41 GAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAGGT GAGGCCCTTTGTGCTGAACACCGAATCAACCTAATTAAGGT < 41bp 1 0.598710770537013 1 0.491567313671112 experiment 0.802578458925973 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS12 ENSG00000112306 CDS Human protein_coding chr6:133137684 chr6:133137686 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_44699 0 0 1 0 2 RPS12 chr6:133137702 5'GT 133137702 Upstream 17bp
chr6 133137686 133137686 1 + A G UCEC 133137694 + 133137674 133137714 41 GTGCTGAACACCAAATCAACCTAATTAAGGTAAGGCTGCTA GTGCTGAACACCGAATCAACCTAATTAAGGTAAGGCTGCTA < 41bp 1 0.491230029640488 1 0.186433523893356 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS12 ENSG00000112306 CDS Human protein_coding chr6:133137694 chr6:133137686 nonsynonymous SNV 0.997 1 13 hm5C_associated_SNPs_44700 0 0 1 0 2 RPS12 chr6:133137600 3'AG 133137600 Downstream 87bp
chr6 133137686 133137686 1 + A G UCEC 133137694 + 133137674 133137714 41 GTGCTGAACACCAAATCAACCTAATTAAGGTAAGGCTGCTA GTGCTGAACACCGAATCAACCTAATTAAGGTAAGGCTGCTA < 41bp 1 0.491230029640488 1 0.186433523893356 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS12 ENSG00000112306 CDS Human protein_coding chr6:133137694 chr6:133137686 nonsynonymous SNV 0.997 1 13 hm5C_associated_SNPs_44700 0 0 1 0 2 RPS12 chr6:133137702 5'GT 133137702 Upstream 17bp
chr17 25633863 25633863 1 + C A UCEC 25633851 + 25633831 25633871 41 GGGCATCAGAATTGGGTGTACAGCTGTGCATTCTCTCCTGA GGGCATCAGAATTGGGTGTACAGCTGTGCATTATCTCCTGA < 41bp 1 0.719177466030001 1 0.199654132127762 experiment 0.561645067939998 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WSB1 ENSG00000109046 CDS Human protein_coding chr17:25633851 chr17:25633863 nonsynonymous SNV 0.998 3 33 hm5C_associated_SNPs_44702 0 0 1 1 2 WSB1 chr17:25633808 3'AG 25633808 Downstream 56bp
chr17 25633863 25633863 1 + C A UCEC 25633851 + 25633831 25633871 41 GGGCATCAGAATTGGGTGTACAGCTGTGCATTCTCTCCTGA GGGCATCAGAATTGGGTGTACAGCTGTGCATTATCTCCTGA < 41bp 1 0.719177466030001 1 0.199654132127762 experiment 0.561645067939998 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WSB1 ENSG00000109046 CDS Human protein_coding chr17:25633851 chr17:25633863 nonsynonymous SNV 0.998 3 33 hm5C_associated_SNPs_44702 0 0 1 1 2 WSB1 chr17:25633908 5'GT 25633908 Upstream 46bp
chr13 25905590 25905590 1 + G A UCEC 25905593 + 25905573 25905613 41 GAAGCCAAGAAGTGGCAGAACACACCCAGAGTTACTACTGG GAAGCCAAGAAGTGGCAAAACACACCCAGAGTTACTACTGG < 41bp 1 0.340247674968199 1 0.0614571571350098 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP58 ENSG00000139496 CDS Human protein_coding chr13:25905593 chr13:25905590 synonymous SNV . 0 18 hm5C_associated_SNPs_44703 0 0 1 0 1 NUP58 chr13:25905495 3'AG 25905495 Downstream 96bp
chr8 2092608 2092608 1 + G A UCEC 2092590 + 2092570 2092610 41 AACCTCTTCCGTCCAAAGACCTTGAATCTGACCTGCACGGT AACCTCTTCCGTCCAAAGACCTTGAATCTGACCTGCACAGT < 41bp 1 0.28551797012094 1 0.252942025661469 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2092590 chr8:2092608 synonymous SNV . 0 39 hm5C_associated_SNPs_44704 0 0 0 0 1 MYOM2 chr8:2092588 3'AG 2092588 Downstream 21bp
chr17 73058266 73058266 1 + T G UCEC 73058257 + 73058237 73058277 41 ATAACTACGGCAATGAGGATCAGGCAGAATTCCTCTGTGTT ATAACTACGGCAATGAGGATCAGGCAGAAGTCCTCTGTGTT < 41bp 1 0.244023171093867 1 0.782800197601318 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD2 ENSG00000180901 CDS Human protein_coding chr17:73058257 chr17:73058266 nonsynonymous SNV 0.998 4 30 hm5C_associated_SNPs_44705 0 0 1 0 2 KCTD2 chr17:73058215 3'AG 73058215 Downstream 52bp
chr17 73058266 73058266 1 + T G UCEC 73058257 + 73058237 73058277 41 ATAACTACGGCAATGAGGATCAGGCAGAATTCCTCTGTGTT ATAACTACGGCAATGAGGATCAGGCAGAAGTCCTCTGTGTT < 41bp 1 0.244023171093867 1 0.782800197601318 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD2 ENSG00000180901 CDS Human protein_coding chr17:73058257 chr17:73058266 nonsynonymous SNV 0.998 4 30 hm5C_associated_SNPs_44705 0 0 1 0 2 KCTD2 chr17:73058340 5'GT 73058340 Upstream 75bp
chr11 120280116 120280116 1 + G T UCEC 120280127 + 120280107 120280147 41 CTCCTCCAAGAAGACAAAGTCTAGTTCAGAGGAGAGTAGAT CTCCTCCAATAAGACAAAGTCTAGTTCAGAGGAGAGTAGAT < 41bp 1 0.171280267555006 1 0.32916048169136 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120280127 chr11:120280116 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_44706 0 0 1 0 2 ARHGEF12 chr11:120280103 3'AG 120280103 Downstream 14bp
chr11 120280116 120280116 1 + G T UCEC 120280127 + 120280107 120280147 41 CTCCTCCAAGAAGACAAAGTCTAGTTCAGAGGAGAGTAGAT CTCCTCCAATAAGACAAAGTCTAGTTCAGAGGAGAGTAGAT < 41bp 1 0.171280267555006 1 0.32916048169136 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120280127 chr11:120280116 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_44706 0 0 1 0 2 ARHGEF12 chr11:120280159 5'GT 120280159 Upstream 44bp
chr22 46681152 46681152 1 + C T UCEC 46681140 + 46681120 46681160 41 AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCGCTGAC AGAACTTTATTCTTCCAGGGCGAATATGAGGCTGCGCTGAC < 41bp 1 0.11092632055655 1 0.241885125637054 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC38 ENSG00000075234 CDS Human protein_coding chr22:46681140 chr22:46681152 synonymous SNV . 0 33 hm5C_associated_SNPs_44708 0 0 1 0 2 TTC38 chr22:46681138 3'AG 46681138 Downstream 15bp
chr22 46681152 46681152 1 + C T UCEC 46681140 + 46681120 46681160 41 AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCGCTGAC AGAACTTTATTCTTCCAGGGCGAATATGAGGCTGCGCTGAC < 41bp 1 0.11092632055655 1 0.241885125637054 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC38 ENSG00000075234 CDS Human protein_coding chr22:46681140 chr22:46681152 synonymous SNV . 0 33 hm5C_associated_SNPs_44708 0 0 1 0 2 TTC38 chr22:46681176 5'GT 46681176 Upstream 25bp
chrX 123191727 123191727 1 + G A UCEC 123191735 + 123191715 123191755 41 GGCTCTTCAGTCGTAGAGATCCAGAGGAGGATGGAATGATG GGCTCTTCAGTCATAGAGATCCAGAGGAGGATGGAATGATG < 41bp 1 0.431027081316635 1 0.552512347698212 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123191735 chrX:123191727 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_44709 0 0 1 0 1 STAG2 chrX:123191716 3'AG 123191716 Downstream 12bp
chr7 150765124 150765124 1 + G A UCEC 150765104 + 150765084 150765124 41 CACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCG CACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCA < 41bp 1 0.58099983986784 1 0.36908808350563 experiment 0.83800032026432 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765104 chr7:150765124 nonsynonymous SNV 0.999 3 41 hm5C_associated_SNPs_44714 0 0 1 0 1 SLC4A2 chr7:150765141 5'GT 150765141 Upstream 18bp
chr7 150765124 150765124 1 + G A UCEC 150765105 + 150765085 150765125 41 ACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCGC ACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCAC < 41bp 1 0.546639493457049 1 0.782880663871765 experiment 0.906721013085902 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765105 chr7:150765124 nonsynonymous SNV 0.999 3 40 hm5C_associated_SNPs_44715 0 0 1 0 1 SLC4A2 chr7:150765141 5'GT 150765141 Upstream 18bp
chr6 155139671 155139671 1 + G A UCEC 155139674 + 155139654 155139694 41 TCGACAAGATGCATTTCGAGCTCTTCAGAAACTCAGTTCTG TCGACAAGATGCATTTCAAGCTCTTCAGAAACTCAGTTCTG < 41bp 1 0.201607012784229 1 0.200932830572128 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155139674 chr6:155139671 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_44716 0 0 1 0 2 SCAF8 chr6:155139613 3'AG 155139613 Downstream 59bp
chr6 155139671 155139671 1 + G A UCEC 155139674 + 155139654 155139694 41 TCGACAAGATGCATTTCGAGCTCTTCAGAAACTCAGTTCTG TCGACAAGATGCATTTCAAGCTCTTCAGAAACTCAGTTCTG < 41bp 1 0.201607012784229 1 0.200932830572128 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155139674 chr6:155139671 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_44716 0 0 1 0 2 SCAF8 chr6:155139726 5'GT 155139726 Upstream 56bp
chr7 6634125 6634125 1 + T C UCEC 6634139 + 6634119 6634159 41 CTGCTGTTTGGTGCCGGGATCCATTCAGACGCTGAAGCAGA CTGCTGCTTGGTGCCGGGATCCATTCAGACGCTGAAGCAGA < 41bp 1 0.0466458267133633 1 0.321909964084625 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6634139 chr7:6634125 synonymous SNV . 0 7 hm5C_associated_SNPs_44717 0 0 1 0 1 C7orf26 chr7:6634066 3'AG 6634066 Downstream 60bp
chr3 170009710 170009710 1 + T G UCEC 170009695 + 170009675 170009715 41 TTCTGTGGTACTCCTAATTACATTGCTCCTGAAATTTTAAG TTCTGTGGTACTCCTAATTACATTGCTCCTGAAATGTTAAG < 41bp 1 0.110718478192391 1 0.0404757559299469 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:170009695 chr3:170009710 nonsynonymous SNV 0.997 4 36 hm5C_associated_SNPs_44718 0 0 0 0 2 PRKCI chr3:170009642 3'AG 170009642 Downstream 69bp
chr3 170009710 170009710 1 + T G UCEC 170009695 + 170009675 170009715 41 TTCTGTGGTACTCCTAATTACATTGCTCCTGAAATTTTAAG TTCTGTGGTACTCCTAATTACATTGCTCCTGAAATGTTAAG < 41bp 1 0.110718478192391 1 0.0404757559299469 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:170009695 chr3:170009710 nonsynonymous SNV 0.997 4 36 hm5C_associated_SNPs_44718 0 0 0 0 2 PRKCI chr3:170009729 5'GT 170009729 Upstream 20bp
chr2 102959741 102959741 1 + G A UCEC 102959733 + 102959713 102959753 41 ACAGGTTGCTTTCTTAGTTTCAGCAATGGGCTGGCTTGTCT ACAGGTTGCTTTCTTAGTTTCAGCAATGAGCTGGCTTGTCT < 41bp 1 0.624726522334029 1 0.792106747627258 experiment 0.750546955331941 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control IL1RL1 ENSG00000115602 CDS Human protein_coding chr2:102959733 chr2:102959741 nonsynonymous SNV 0.003 0 29 hm5C_associated_SNPs_44720 0 0 0 0 1 IL1RL1 chr2:102959730 3'AG 102959730 Downstream 12bp
chr17 43323043 43323043 1 + G T UCEC 43323037 + 43323017 43323057 41 GTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCCCAGG GTGGAGTACTTCGGAGAGAACCCCAATACCACATCCCCAGG < 41bp 1 0.535902618493539 1 0.458982288837433 experiment 0.928194763012922 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FMNL1 ENSG00000184922 CDS Human antisense chr17:43323037 chr17:43323043 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_44721 0 0 1 0 3 FMNL1 chr17:43322986 3'AG 43322986 Downstream 58bp
chr17 43323043 43323043 1 + G T UCEC 43323037 + 43323017 43323057 41 GTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCCCAGG GTGGAGTACTTCGGAGAGAACCCCAATACCACATCCCCAGG < 41bp 1 0.535902618493539 1 0.458982288837433 experiment 0.928194763012922 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43323037 chr17:43323043 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_44721 0 0 1 0 3 FMNL1 chr17:43322999 3'AG 43322999 Downstream 45bp
chr17 43323043 43323043 1 + G T UCEC 43323037 + 43323017 43323057 41 GTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCCCAGG GTGGAGTACTTCGGAGAGAACCCCAATACCACATCCCCAGG < 41bp 1 0.535902618493539 1 0.458982288837433 experiment 0.928194763012922 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43323037 chr17:43323043 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_44721 0 0 1 0 3 FMNL1 chr17:43323100 5'GT 43323100 Upstream 58bp
chr1 26136285 26136285 1 + C T UCEC 26136269 + 26136249 26136289 41 CATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCC CATCATCCTCTCCAAAGACGCCACCCACGTCCGCGATTTCC < 41bp 1 0.0359107683861424 1 0.0551288723945618 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136269 chr1:26136285 synonymous SNV . 0 37 hm5C_associated_SNPs_44722 0 0 1 0 1 SELENON chr1:26136311 5'GT 26136311 Upstream 27bp
chr1 26136285 26136285 1 + C T UCEC 26136270 + 26136250 26136290 41 ATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCG ATCATCCTCTCCAAAGACGCCACCCACGTCCGCGATTTCCG < 41bp 1 0.102844843918595 1 0.0325266122817993 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136270 chr1:26136285 synonymous SNV . 0 36 hm5C_associated_SNPs_44723 0 0 1 0 1 SELENON chr1:26136311 5'GT 26136311 Upstream 27bp
chr1 26136285 26136285 1 + C T UCEC 26136273 + 26136253 26136293 41 ATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCT ATCCTCTCCAAAGACGCCACCCACGTCCGCGATTTCCGGCT < 41bp 1 0.119226329940207 1 0.112191200256348 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136273 chr1:26136285 synonymous SNV . 0 33 hm5C_associated_SNPs_44724 0 0 1 0 1 SELENON chr1:26136311 5'GT 26136311 Upstream 27bp
chr1 26136285 26136285 1 + C T UCEC 26136274 + 26136254 26136294 41 TCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCTC TCCTCTCCAAAGACGCCACCCACGTCCGCGATTTCCGGCTC < 41bp 1 0.553561778128959 1 0.0605772733688354 experiment 0.892876443742082 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136274 chr1:26136285 synonymous SNV . 0 32 hm5C_associated_SNPs_44725 0 0 1 0 1 SELENON chr1:26136311 5'GT 26136311 Upstream 27bp
chr3 25542761 25542761 1 + G A UCEC 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACCAGGAATCAATGCCAATACTGTCGACTCCAGAAGTGCTT < 41bp 1 0.238935560182215 1 0.0825390517711639 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542761 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_44726 0 0 1 0 2 RARB chr3:25542673 3'AG 25542673 Downstream 89bp
chr3 25542761 25542761 1 + G A UCEC 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACCAGGAATCAATGCCAATACTGTCGACTCCAGAAGTGCTT < 41bp 1 0.238935560182215 1 0.0825390517711639 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542761 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_44726 0 0 1 0 2 RARB chr3:25542814 5'GT 25542814 Upstream 54bp
chr17 4905839 4905839 1 + G A UCEC 4905833 + 4905813 4905853 41 AGTCGGGGTTCTCTGCGGGTCCGGGAGCACCCCATCCTGGG AGTCGGGGTTCTCTGCGGGTCCGGGAACACCCCATCCTGGG < 41bp 1 0.515717851465978 1 0.619586706161499 experiment 0.968564297068043 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905833 chr17:4905839 synonymous SNV . 0 27 hm5C_associated_SNPs_44727 0 0 1 0 2 KIF1C chr17:4905759 3'AG 4905759 Downstream 81bp
chr17 4905839 4905839 1 + G A UCEC 4905833 + 4905813 4905853 41 AGTCGGGGTTCTCTGCGGGTCCGGGAGCACCCCATCCTGGG AGTCGGGGTTCTCTGCGGGTCCGGGAACACCCCATCCTGGG < 41bp 1 0.515717851465978 1 0.619586706161499 experiment 0.968564297068043 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905833 chr17:4905839 synonymous SNV . 0 27 hm5C_associated_SNPs_44727 0 0 1 0 2 KIF1C chr17:4905937 5'GT 4905937 Upstream 99bp
chr15 66816079 66816079 1 + T G UCEC 66816065 + 66816045 66816085 41 GGTCCTTTGAATCATCTCTACAGAGAACTGAAATTTCTTCT GGTCCTTTGAATCATCTCTACAGAGAACTGAAATGTCTTCT < 41bp 1 0.437343551073004 1 0.331680953502655 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZWILCH ENSG00000174442 CDS Human protein_coding chr15:66816065 chr15:66816079 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_44728 0 0 1 0 2 ZWILCH chr15:66816015 3'AG 66816015 Downstream 65bp
chr15 66816079 66816079 1 + T G UCEC 66816065 + 66816045 66816085 41 GGTCCTTTGAATCATCTCTACAGAGAACTGAAATTTCTTCT GGTCCTTTGAATCATCTCTACAGAGAACTGAAATGTCTTCT < 41bp 1 0.437343551073004 1 0.331680953502655 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZWILCH ENSG00000174442 CDS Human protein_coding chr15:66816065 chr15:66816079 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_44728 0 0 1 0 2 ZWILCH chr15:66816086 5'GT 66816086 Upstream 8bp
chr16 29828312 29828312 1 + G T UCEC 29828300 + 29828280 29828320 41 AGGAGAGATCCGATGAGGAGCCGGAGGCCAAAGAAGAGGAA AGGAGAGATCCGATGAGGAGCCGGAGGCCAAATAAGAGGAA < 41bp 1 0.694195321878436 1 0.595689594745636 experiment 0.611609356243127 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828300 chr16:29828312 stopgain 1.000 1 33 hm5C_associated_SNPs_44729 0 0 1 0 1 PAGR1 chr16:29828328 5'GT 29828328 Upstream 17bp
chr16 29828312 29828312 1 + G T UCEC 29828301 + 29828281 29828321 41 GGAGAGATCCGATGAGGAGCCGGAGGCCAAAGAAGAGGAAG GGAGAGATCCGATGAGGAGCCGGAGGCCAAATAAGAGGAAG < 41bp 1 0.748337899450412 1 0.813071310520172 experiment 0.503324201099176 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828301 chr16:29828312 stopgain 1.000 1 32 hm5C_associated_SNPs_44730 0 0 1 0 1 PAGR1 chr16:29828328 5'GT 29828328 Upstream 17bp
chr16 29828312 29828312 1 + G T UCEC 29828307 + 29828287 29828327 41 ATCCGATGAGGAGCCGGAGGCCAAAGAAGAGGAAGAGGAAA ATCCGATGAGGAGCCGGAGGCCAAATAAGAGGAAGAGGAAA < 41bp 1 0.364146315105004 1 0.494572937488556 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828307 chr16:29828312 stopgain 1.000 1 26 hm5C_associated_SNPs_44731 0 0 1 0 1 PAGR1 chr16:29828328 5'GT 29828328 Upstream 17bp
chr9 131730845 131730845 1 + G T UCEC 131730830 + 131730810 131730850 41 TTGTTCAGTGCCTTCGGGAACAGTCCATGCTGCTAGAAATT TTGTTCAGTGCCTTCGGGAACAGTCCATGCTGCTATAAATT < 41bp 1 0.0419932768553591 1 0.316308557987213 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUP188 ENSG00000095319 CDS Human protein_coding chr9:131730830 chr9:131730845 stopgain 0.999 1 36 hm5C_associated_SNPs_44732 0 0 1 0 1 NUP188 chr9:131730785 3'AG 131730785 Downstream 61bp
chr22 32889266 32889266 1 + G A UCEC 32889253 + 32889233 32889273 41 TCCTGTGGAGGTTTTTATATCTGCGTGATTTTCGAGGTGAT TCCTGTGGAGGTTTTTATATCTGCGTGATTTTCAAGGTGAT < 41bp 1 0.55349929228054 1 0.462613224983215 experiment 0.893001415438921 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32889253 chr22:32889266 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_44733 0 0 1 0 1 FBXO7 chr22:32889268 5'GT 32889268 Upstream 3bp
chr19 11215934 11215934 1 + G A UCEC 11215952 + 11215932 11215972 41 ACGATGGGAAGTGCATCTCTCGGCAGTTCGTCTGTGACTCA ACAATGGGAAGTGCATCTCTCGGCAGTTCGTCTGTGACTCA < 41bp 1 0.788533354711832 1 0.882750034332275 experiment 0.422933290576335 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LDLR ENSG00000130164 CDS Human protein_coding chr19:11215952 chr19:11215934 nonsynonymous SNV 0.555 1 3 hm5C_associated_SNPs_44734 1 0 1 0 1 LDLR chr19:11215896 3'AG 11215896 Downstream 39bp
chr19 7589945 7589945 1 + C T UCEC 7589936 + 7589916 7589956 41 CACCCCCAGAAGAGGAAGACCTTCGCCGTCGTCTCAAATAC CACCCCCAGAAGAGGAAGACCTTCGCCGTTGTCTCAAATAC < 41bp 1 0.298498166342053 1 0.156070232391357 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7589936 chr19:7589945 nonsynonymous SNV 0.982 3 30 hm5C_associated_SNPs_44736 0 0 1 0 1 MCOLN1 chr19:7589847 3'AG 7589847 Downstream 99bp
chr2 233681608 233681608 1 + A C UCEC 233681615 + 233681595 233681635 41 AAGAGAGGCAGAAATGAGGGCAAAACGGGAAGAGGAAGAGC AAGAGAGGCAGAACTGAGGGCAAAACGGGAAGAGGAAGAGC < 41bp 1 0.291287834733328 1 0.416121542453766 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233681615 chr2:233681608 nonsynonymous SNV 1.000 0 14 hm5C_associated_SNPs_44737 0 0 1 0 1 GIGYF2 chr2:233681581 3'AG 233681581 Downstream 28bp
chr7 102107901 102107901 1 + C T UCEC 102107918 + 102107898 102107938 41 AGTCCCTCAGCGAGTTCACCCAGTGGCGGGTATGTCCCTGT AGTTCCTCAGCGAGTTCACCCAGTGGCGGGTATGTCCCTGT < 41bp 1 0.424862604230001 1 0.338834524154663 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102107918 chr7:102107901 nonsynonymous SNV 0.998 4 4 hm5C_associated_SNPs_44738 0 0 0 0 1 LRWD1 chr7:102107926 5'GT 102107926 Upstream 26bp
chrX 67741237 67741237 1 + A G UCEC 67741231 + 67741211 67741251 41 CAGAATGCTGCAAAGAGACTCTGCAGATAGTGAAAAAGATG CAGAATGCTGCAAAGAGACTCTGCAGGTAGTGAAAAAGATG < 41bp 1 0.704795905245541 1 0.389639616012573 experiment 0.590408189508918 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YIPF6 ENSG00000181704 CDS Human protein_coding chrX:67741231 chrX:67741237 nonsynonymous SNV 0.047 1 27 hm5C_associated_SNPs_44740 0 0 1 0 1 YIPF6 chrX:67741214 3'AG 67741214 Downstream 24bp
chr20 35835736 35835736 1 + G A UCEC 35835730 + 35835710 35835750 41 GCAAGAAGAACTTTGAGTCCCTCTCCGAAGCCTTCAGCGTG GCAAGAAGAACTTTGAGTCCCTCTCCAAAGCCTTCAGCGTG < 41bp 1 0.2241114743593 1 0.110110342502594 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35835730 chr20:35835736 nonsynonymous SNV 0.997 2 27 hm5C_associated_SNPs_44741 0 0 1 0 1 RPN2 chr20:35835676 3'AG 35835676 Downstream 61bp
chr5 162905753 162905753 1 + A G UCEC 162905772 + 162905752 162905792 41 AAAAGTATGACAGTATGGTGCAAAGCCTTGAAGATGTTACT AGAAGTATGACAGTATGGTGCAAAGCCTTGAAGATGTTACT < 41bp 1 0.346600131650233 1 0.168909549713135 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HMMR ENSG00000072571 CDS Human protein_coding chr5:162905772 chr5:162905753 synonymous SNV . 0 2 hm5C_associated_SNPs_44742 0 0 1 0 2 HMMR chr5:162905690 3'AG 162905690 Downstream 64bp
chr5 162905753 162905753 1 + A G UCEC 162905772 + 162905752 162905792 41 AAAAGTATGACAGTATGGTGCAAAGCCTTGAAGATGTTACT AGAAGTATGACAGTATGGTGCAAAGCCTTGAAGATGTTACT < 41bp 1 0.346600131650233 1 0.168909549713135 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HMMR ENSG00000072571 CDS Human protein_coding chr5:162905772 chr5:162905753 synonymous SNV . 0 2 hm5C_associated_SNPs_44742 0 0 1 0 2 HMMR chr5:162905806 5'GT 162905806 Upstream 54bp
chr5 167933122 167933122 1 + A G UCEC 167933117 + 167933097 167933137 41 AAATCAGATGGAGGTTATACCTATGATACATCTGACCTGGC AAATCAGATGGAGGTTATACCTATGGTACATCTGACCTGGC < 41bp 1 0.52421466118186 1 0.323232203722 experiment 0.95157067763628 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RARS ENSG00000113643 CDS Human protein_coding chr5:167933117 chr5:167933122 nonsynonymous SNV 0.999 3 26 hm5C_associated_SNPs_44743 0 0 1 0 2 RARS chr5:167933026 3'AG 167933026 Downstream 97bp
chr5 167933122 167933122 1 + A G UCEC 167933117 + 167933097 167933137 41 AAATCAGATGGAGGTTATACCTATGATACATCTGACCTGGC AAATCAGATGGAGGTTATACCTATGGTACATCTGACCTGGC < 41bp 1 0.52421466118186 1 0.323232203722 experiment 0.95157067763628 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RARS ENSG00000113643 CDS Human protein_coding chr5:167933117 chr5:167933122 nonsynonymous SNV 0.999 3 26 hm5C_associated_SNPs_44743 0 0 1 0 2 RARS chr5:167933204 5'GT 167933204 Upstream 83bp
chr12 70704744 70704744 1 + G A UCEC 70704725 + 70704705 70704745 41 AAGAAGTTTGTAGAGGGGGTCGACAGTGACTACCATGACGA AAGAAGTTTGTAGAGGGGGTCGACAGTGACTACCATGACAA < 41bp 1 0.748629605991765 1 0.480823457241058 experiment 0.50274078801647 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT2 ENSG00000111596 CDS Human protein_coding chr12:70704725 chr12:70704744 nonsynonymous SNV 0.996 1 40 hm5C_associated_SNPs_44744 0 0 1 0 2 CNOT2 chr12:70704675 3'AG 70704675 Downstream 70bp
chr12 70704744 70704744 1 + G A UCEC 70704725 + 70704705 70704745 41 AAGAAGTTTGTAGAGGGGGTCGACAGTGACTACCATGACGA AAGAAGTTTGTAGAGGGGGTCGACAGTGACTACCATGACAA < 41bp 1 0.748629605991765 1 0.480823457241058 experiment 0.50274078801647 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT2 ENSG00000111596 CDS Human protein_coding chr12:70704725 chr12:70704744 nonsynonymous SNV 0.996 1 40 hm5C_associated_SNPs_44744 0 0 1 0 2 CNOT2 chr12:70704797 5'GT 70704797 Upstream 54bp
chr11 17331199 17331199 1 + G T UCEC 17331183 + 17331163 17331203 41 CTAAACCACCTGAATCCTGACAAGTTTGAATCCACAGATTT CTAAACCACCTGAATCCTGACAAGTTTGAATCCACATATTT < 41bp 1 0.395655044804018 1 0.0814482569694519 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NUCB2 ENSG00000070081 CDS Human protein_coding chr11:17331183 chr11:17331199 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_44745 0 0 0 0 2 NUCB2 chr11:17331119 3'AG 17331119 Downstream 81bp
chr11 17331199 17331199 1 + G T UCEC 17331183 + 17331163 17331203 41 CTAAACCACCTGAATCCTGACAAGTTTGAATCCACAGATTT CTAAACCACCTGAATCCTGACAAGTTTGAATCCACATATTT < 41bp 1 0.395655044804018 1 0.0814482569694519 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NUCB2 ENSG00000070081 CDS Human protein_coding chr11:17331183 chr11:17331199 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_44745 0 0 0 0 2 NUCB2 chr11:17331222 5'GT 17331222 Upstream 24bp
chr1 57157092 57157092 1 + G T UCEC 57157082 + 57157062 57157102 41 AAAAGATACCAGGTGATCAGCACTCCAACAGATTTTTTTAT AAAAGATACCAGGTGATCAGCACTCCAACATATTTTTTTAT < 41bp 1 0.0420566188565077 1 0.0945472419261932 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57157082 chr1:57157092 nonsynonymous SNV 0.999 4 31 hm5C_associated_SNPs_44746 0 0 1 0 2 PRKAA2 chr1:57157067 3'AG 57157067 Downstream 26bp
chr1 57157092 57157092 1 + G T UCEC 57157082 + 57157062 57157102 41 AAAAGATACCAGGTGATCAGCACTCCAACAGATTTTTTTAT AAAAGATACCAGGTGATCAGCACTCCAACATATTTTTTTAT < 41bp 1 0.0420566188565077 1 0.0945472419261932 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57157082 chr1:57157092 nonsynonymous SNV 0.999 4 31 hm5C_associated_SNPs_44746 0 0 1 0 2 PRKAA2 chr1:57157160 5'GT 57157160 Upstream 69bp
chr12 69128526 69128526 1 + G T UCEC 69128531 + 69128511 69128551 41 GTGGTTTAAGCATATGAATTCAGTTCCACAAAAACCTGCTT GTGGTTTAAGCATATTAATTCAGTTCCACAAAAACCTGCTT < 41bp 1 0.182317101019039 1 0.496727705001831 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69128531 chr12:69128526 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_44747 0 0 1 0 2 NUP107 chr12:69128488 3'AG 69128488 Downstream 39bp
chr12 69128526 69128526 1 + G T UCEC 69128531 + 69128511 69128551 41 GTGGTTTAAGCATATGAATTCAGTTCCACAAAAACCTGCTT GTGGTTTAAGCATATTAATTCAGTTCCACAAAAACCTGCTT < 41bp 1 0.182317101019039 1 0.496727705001831 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69128531 chr12:69128526 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_44747 0 0 1 0 2 NUP107 chr12:69128613 5'GT 69128613 Upstream 88bp
chr2 118579617 118579617 1 + C T UCEC 118579611 + 118579591 118579631 41 TCAACATCATTGTGGCCACACCAGGCCGTCTGCTGGACCAT TCAACATCATTGTGGCCACACCAGGCTGTCTGCTGGACCAT < 41bp 1 0.591283539177205 1 0.10666686296463 experiment 0.817432921645591 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579611 chr2:118579617 nonsynonymous SNV 0.990 4 27 hm5C_associated_SNPs_44749 0 0 1 0 1 DDX18 chr2:118579637 5'GT 118579637 Upstream 21bp
chr16 675480 675480 1 + A G UCEC 675485 + 675465 675505 41 TGGTCCTTTGACGGCATCGACCGCTGGATCAAGGAGATCGA TGGTCCTTTGACGGCGTCGACCGCTGGATCAAGGAGATCGA < 41bp 1 0.207163660734217 1 0.277953714132309 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675485 chr16:675480 nonsynonymous SNV 0.993 1 16 hm5C_associated_SNPs_44750 0 0 1 0 2 RAB40C chr16:675432 3'AG 675432 Downstream 49bp
chr16 675480 675480 1 + A G UCEC 675485 + 675465 675505 41 TGGTCCTTTGACGGCATCGACCGCTGGATCAAGGAGATCGA TGGTCCTTTGACGGCGTCGACCGCTGGATCAAGGAGATCGA < 41bp 1 0.207163660734217 1 0.277953714132309 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675485 chr16:675480 nonsynonymous SNV 0.993 1 16 hm5C_associated_SNPs_44750 0 0 1 0 2 RAB40C chr16:675509 5'GT 675509 Upstream 30bp
chrX 114856667 114856667 1 + G A UCEC 114856664 + 114856644 114856684 41 AGAGAAATTATTCAGAAACTCATGCTGGATGGTGACAGGAA AGAGAAATTATTCAGAAACTCATACTGGATGGTGACAGGAA < 41bp 1 0.129450974330362 1 0.118164718151093 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PLS3 ENSG00000102024 CDS Human protein_coding chrX:114856664 chrX:114856667 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_44752 0 0 1 2 1 PLS3 chrX:114856721 5'GT 114856721 Upstream 55bp
chrX 114856667 114856667 1 + G A UCEC 114856679 + 114856659 114856699 41 AAACTCATGCTGGATGGTGACAGGAATAAAGATGGGAAAAT AAACTCATACTGGATGGTGACAGGAATAAAGATGGGAAAAT < 41bp 1 0.795623751233163 1 0.367406666278839 experiment 0.408752497533675 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PLS3 ENSG00000102024 CDS Human protein_coding chrX:114856679 chrX:114856667 nonsynonymous SNV 0.999 1 9 hm5C_associated_SNPs_44753 0 0 1 2 1 PLS3 chrX:114856721 5'GT 114856721 Upstream 55bp
chr22 40666239 40666239 1 + G T UCEC 40666231 + 40666211 40666251 41 GATGGATGATACAGGAGCATCGACCACAGGCTGGGGGAACA GATGGATGATACAGGAGCATCGACCACATGCTGGGGGAACA < 41bp 1 0.119990868285782 1 0.181181997060776 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40666231 chr22:40666239 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_44754 0 0 0 0 1 TNRC6B chr22:40666284 5'GT 40666284 Upstream 46bp
chrX 47072509 47072509 1 + A G UCEC 47072491 + 47072471 47072511 41 ACAAGGTTGTGCAGGGGCACCGACAGCTTGACTCCTACAAG ACAAGGTTGTGCAGGGGCACCGACAGCTTGACTCCTACGAG < 41bp 1 0.712972310391589 1 0.426764607429504 experiment 0.574055379216821 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBA1 ENSG00000130985 CDS Human protein_coding chrX:47072491 chrX:47072509 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_44755 0 0 1 0 1 UBA1 chrX:47072580 5'GT 47072580 Upstream 72bp
chr1 182827337 182827337 1 + G T UCEC 182827338 + 182827318 182827358 41 CCATCTTGGAGTGGTTGAAGCTTACTCCGGACTTACAAAGA CCATCTTGGAGTGGTTGAATCTTACTCCGGACTTACAAAGA < 41bp 1 0.273926662093661 1 0.273489624261856 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182827338 chr1:182827337 nonsynonymous SNV 0.999 0 20 hm5C_associated_SNPs_44756 0 0 1 0 2 DHX9 chr1:182827239 3'AG 182827239 Downstream 99bp
chr1 182827337 182827337 1 + G T UCEC 182827338 + 182827318 182827358 41 CCATCTTGGAGTGGTTGAAGCTTACTCCGGACTTACAAAGA CCATCTTGGAGTGGTTGAATCTTACTCCGGACTTACAAAGA < 41bp 1 0.273926662093661 1 0.273489624261856 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182827338 chr1:182827337 nonsynonymous SNV 0.999 0 20 hm5C_associated_SNPs_44756 0 0 1 0 2 DHX9 chr1:182827375 5'GT 182827375 Upstream 39bp
chr1 182827337 182827337 1 + G T UCEC 182827342 + 182827322 182827362 41 CTTGGAGTGGTTGAAGCTTACTCCGGACTTACAAAGAAGAA CTTGGAGTGGTTGAATCTTACTCCGGACTTACAAAGAAGAA < 41bp 1 0.734579327697949 1 0.359808683395386 experiment 0.530841344604102 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182827342 chr1:182827337 nonsynonymous SNV 0.999 0 16 hm5C_associated_SNPs_44757 0 0 1 0 2 DHX9 chr1:182827239 3'AG 182827239 Downstream 99bp
chr1 182827337 182827337 1 + G T UCEC 182827342 + 182827322 182827362 41 CTTGGAGTGGTTGAAGCTTACTCCGGACTTACAAAGAAGAA CTTGGAGTGGTTGAATCTTACTCCGGACTTACAAAGAAGAA < 41bp 1 0.734579327697949 1 0.359808683395386 experiment 0.530841344604102 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182827342 chr1:182827337 nonsynonymous SNV 0.999 0 16 hm5C_associated_SNPs_44757 0 0 1 0 2 DHX9 chr1:182827375 5'GT 182827375 Upstream 39bp
chr1 182827337 182827337 1 + G T UCEC 182827349 + 182827329 182827369 41 TGGTTGAAGCTTACTCCGGACTTACAAAGAAGAAGGAAGGA TGGTTGAATCTTACTCCGGACTTACAAAGAAGAAGGAAGGA < 41bp 1 0.0522472902949628 1 0.0626658797264099 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182827349 chr1:182827337 nonsynonymous SNV 0.999 0 9 hm5C_associated_SNPs_44758 0 0 1 0 2 DHX9 chr1:182827239 3'AG 182827239 Downstream 99bp
chr1 182827337 182827337 1 + G T UCEC 182827349 + 182827329 182827369 41 TGGTTGAAGCTTACTCCGGACTTACAAAGAAGAAGGAAGGA TGGTTGAATCTTACTCCGGACTTACAAAGAAGAAGGAAGGA < 41bp 1 0.0522472902949628 1 0.0626658797264099 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182827349 chr1:182827337 nonsynonymous SNV 0.999 0 9 hm5C_associated_SNPs_44758 0 0 1 0 2 DHX9 chr1:182827375 5'GT 182827375 Upstream 39bp
chr17 47119679 47119679 1 + C T UCEC 47119678 + 47119658 47119698 41 CATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGA CATCGAGAATTGTTGCAGGGCTGAGCAGGAAATAATGAAGA < 41bp 1 0.313630551759634 1 0.199812978506088 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119678 chr17:47119679 synonymous SNV . 0 22 hm5C_associated_SNPs_44759 0 0 1 0 1 IGF2BP1 chr17:47119604 3'AG 47119604 Downstream 76bp
chr16 5127982 5127982 1 + T C UCEC 5128001 + 5127981 5128021 41 ATGAAGCTGGGCAGCATGCACTCTCCGTTCAGGGCCCGGTA ACGAAGCTGGGCAGCATGCACTCTCCGTTCAGGGCCCGGTA < 41bp 1 0.363790116679149 1 0.0819019973278046 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128001 chr16:5127982 nonsynonymous SNV 0.967 1 2 hm5C_associated_SNPs_44762 0 0 1 0 2 ALG1 chr16:5127908 3'AG 5127908 Downstream 75bp
chr16 5127982 5127982 1 + T C UCEC 5128001 + 5127981 5128021 41 ATGAAGCTGGGCAGCATGCACTCTCCGTTCAGGGCCCGGTA ACGAAGCTGGGCAGCATGCACTCTCCGTTCAGGGCCCGGTA < 41bp 1 0.363790116679149 1 0.0819019973278046 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128001 chr16:5127982 nonsynonymous SNV 0.967 1 2 hm5C_associated_SNPs_44762 0 0 1 0 2 ALG1 chr16:5128018 5'GT 5128018 Upstream 37bp
chr11 58959632 58959632 1 + C T UCEC 58959625 + 58959605 58959645 41 CCTCAGGCTACAAGGGCCCGCAGCCTACGGTAAAACCTGAC CCTCAGGCTACAAGGGCCCGCAGCCTATGGTAAAACCTGAC < 41bp 1 0.217786576721329 1 0.449804335832596 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DTX4 ENSG00000110042 CDS Human protein_coding chr11:58959625 chr11:58959632 nonsynonymous SNV 0.427 0 28 hm5C_associated_SNPs_44763 0 0 0 0 2 DTX4 chr11:58959571 3'AG 58959571 Downstream 62bp
chr11 58959632 58959632 1 + C T UCEC 58959625 + 58959605 58959645 41 CCTCAGGCTACAAGGGCCCGCAGCCTACGGTAAAACCTGAC CCTCAGGCTACAAGGGCCCGCAGCCTATGGTAAAACCTGAC < 41bp 1 0.217786576721329 1 0.449804335832596 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DTX4 ENSG00000110042 CDS Human protein_coding chr11:58959625 chr11:58959632 nonsynonymous SNV 0.427 0 28 hm5C_associated_SNPs_44763 0 0 0 0 2 DTX4 chr11:58959723 5'GT 58959723 Upstream 92bp
chr16 23700963 23700963 1 + T C UCEC 23700976 + 23700956 23700996 41 CTGCACCTCAGCAACGGCAGCGTGCAGATCAACTTCTTCCA CTGCACCCCAGCAACGGCAGCGTGCAGATCAACTTCTTCCA < 41bp 1 0.179064977470362 1 0.271413087844849 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700976 chr16:23700963 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_44766 0 0 1 0 1 PLK1 chr16:23700997 5'GT 23700997 Upstream 35bp
chr10 24817012 24817012 1 + A C UCEC 24816992 + 24816972 24817012 41 ACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTGCCAA ACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTGCCAC < 41bp 1 0.24239318377706 1 0.683932304382324 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816992 chr10:24817012 synonymous SNV . 0 41 hm5C_associated_SNPs_44768 0 0 1 0 1 KIAA1217 chr10:24817048 5'GT 24817048 Upstream 37bp
chr19 44341227 44341227 1 + T C UCEC 44341234 + 44341214 44341254 41 ACATTCAGGGATGTGGCCATCGACTTCTCTCAGGAGGAGTG ACATTCAGGGATGCGGCCATCGACTTCTCTCAGGAGGAGTG < 41bp 1 0.543665926738198 1 0.123779892921448 experiment 0.912668146523603 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44341234 chr19:44341227 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_44769 0 0 1 0 1 ZNF283 chr19:44341205 3'AG 44341205 Downstream 23bp
chr2 219269107 219269107 1 + G C UCEC 219269106 + 219269086 219269126 41 GAGCAACTCAGCCGTGTGGACGACGTGTACTCAGTGCTCAG GAGCAACTCAGCCGTGTGGACCACGTGTACTCAGTGCTCAG < 41bp 1 0.302861416634103 1 0.0619842112064362 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219269106 chr2:219269107 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_44770 0 0 1 0 1 CTDSP1 chr2:219269020 3'AG 219269020 Downstream 88bp
chr16 82891985 82891985 1 + G A UCEC 82891983 + 82891963 82892003 41 TCAGGTGCTGCTGCTAACATCTGCAGAAGATTTGGACTGCA TCAGGTGCTGCTGCTAACATCTACAGAAGATTTGGACTGCA < 41bp 1 0.4864694284235 1 0.775429725646973 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:82891983 chr16:82891985 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_44771 0 0 0 0 2 CDH13 chr16:82891967 3'AG 82891967 Downstream 19bp
chr16 82891985 82891985 1 + G A UCEC 82891983 + 82891963 82892003 41 TCAGGTGCTGCTGCTAACATCTGCAGAAGATTTGGACTGCA TCAGGTGCTGCTGCTAACATCTACAGAAGATTTGGACTGCA < 41bp 1 0.4864694284235 1 0.775429725646973 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:82891983 chr16:82891985 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_44771 0 0 0 0 2 CDH13 chr16:82892078 5'GT 82892078 Upstream 94bp
chr2 170735045 170735045 1 + C T UCEC 170735039 + 170735019 170735059 41 TTCTTCTCCTCCAAAGGTTTCATAGGCGCAACAGGAACTTT TTCTTCTCCTCCAAAGGTTTCATAGGTGCAACAGGAACTTT < 41bp 1 0.130958122033692 1 0.108347564935684 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBR3 ENSG00000144357 CDS Human protein_coding chr2:170735039 chr2:170735045 synonymous SNV . 0 27 hm5C_associated_SNPs_44773 0 0 1 0 2 UBR3 chr2:170735035 3'AG 170735035 Downstream 11bp
chr2 170735045 170735045 1 + C T UCEC 170735039 + 170735019 170735059 41 TTCTTCTCCTCCAAAGGTTTCATAGGCGCAACAGGAACTTT TTCTTCTCCTCCAAAGGTTTCATAGGTGCAACAGGAACTTT < 41bp 1 0.130958122033692 1 0.108347564935684 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBR3 ENSG00000144357 CDS Human protein_coding chr2:170735039 chr2:170735045 synonymous SNV . 0 27 hm5C_associated_SNPs_44773 0 0 1 0 2 UBR3 chr2:170735084 5'GT 170735084 Upstream 40bp
chr7 155534706 155534706 1 + C T UCEC 155534723 + 155534703 155534743 41 TGGCGGGTTCCAGAAGCTCACAGGGAAAGACGGAAGTGAAA TGGTGGGTTCCAGAAGCTCACAGGGAAAGACGGAAGTGAAA < 41bp 1 0.709929526545305 1 0.325376033782959 experiment 0.580140946909391 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM33 ENSG00000184863 CDS Human protein_coding chr7:155534723 chr7:155534706 nonsynonymous SNV 0.000 0 4 hm5C_associated_SNPs_44774 0 0 1 0 1 RBM33 chr7:155534800 5'GT 155534800 Upstream 95bp
chr1 43893267 43893267 1 + G A UCEC 43893251 + 43893231 43893271 41 CACCATTCCGTCGAGACTTACAGGCTTACGCTGGGCGTCAG CACCATTCCGTCGAGACTTACAGGCTTACGCTGGGCATCAG < 41bp 1 0.276819355137698 1 0.874479651451111 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43893251 chr1:43893267 nonsynonymous SNV 0.979 0 37 hm5C_associated_SNPs_44776 0 0 1 0 1 SZT2 chr1:43893201 3'AG 43893201 Downstream 67bp
chr7 99956338 99956338 1 + C T UCEC 99956353 + 99956333 99956373 41 CCAAGCTACCTTTATGGGGTCACTCAACCAAAACACCTCTC CCAAGTTACCTTTATGGGGTCACTCAACCAAAACACCTCTC < 41bp 1 0.0826121949935841 1 0.0295203626155853 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PILRB ENSG00000121716 CDS Human protein_coding chr7:99956353 chr7:99956338 synonymous SNV . 0 6 hm5C_associated_SNPs_44779 0 0 0 0 1 PILRB chr7:99956313 3'AG 99956313 Downstream 26bp
chrX 153696899 153696899 1 + G A UCEC 153696889 + 153696869 153696909 41 AGAGCAAGAACCACCCCAAGCTGCTGCTACGCAGGTACCTG AGAGCAAGAACCACCCCAAGCTGCTGCTACACAGGTACCTG < 41bp 1 0.274896289270132 1 0.129401087760925 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696889 chrX:153696899 nonsynonymous SNV 0.973 4 31 hm5C_associated_SNPs_44781 0 0 0 0 1 PLXNA3 chrX:153696902 5'GT 153696902 Upstream 4bp
chr2 98263847 98263847 1 + C T UCEC 98263858 + 98263838 98263878 41 CTTCAGGCACCAGGGAAGACCCTAATTTAGTCCCCTCCATC CTTCAGGCATCAGGGAAGACCCTAATTTAGTCCCCTCCATC < 41bp 1 0.30617187527368 1 0.0501925945281982 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control COX5B ENSG00000135940 CDS Human protein_coding chr2:98263858 chr2:98263847 nonsynonymous SNV 0.998 4 10 hm5C_associated_SNPs_44782 0 0 1 0 2 COX5B chr2:98263807 3'AG 98263807 Downstream 41bp
chr2 98263847 98263847 1 + C T UCEC 98263858 + 98263838 98263878 41 CTTCAGGCACCAGGGAAGACCCTAATTTAGTCCCCTCCATC CTTCAGGCATCAGGGAAGACCCTAATTTAGTCCCCTCCATC < 41bp 1 0.30617187527368 1 0.0501925945281982 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control COX5B ENSG00000135940 CDS Human protein_coding chr2:98263858 chr2:98263847 nonsynonymous SNV 0.998 4 10 hm5C_associated_SNPs_44782 0 0 1 0 2 COX5B chr2:98263906 5'GT 98263906 Upstream 60bp
chr1 155583268 155583268 1 + G A UCEC 155583273 + 155583253 155583293 41 CCAGCTCACCCCAGGGACACCTCCACCCTCTGCCCTTCATG CCAGCTCACCCCAGGAACACCTCCACCCTCTGCCCTTCATG < 41bp 1 0.660804023765386 1 0.857155561447144 experiment 0.678391952469228 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MSTO1 ENSG00000125459 CDS Human unprocessed_pseudogene chr1:155583273 chr1:155583268 synonymous SNV . 0 16 hm5C_associated_SNPs_44783 0 0 0 0 3 MSTO1 chr1:155583216 3'AG 155583216 Downstream 53bp
chr1 155583268 155583268 1 + G A UCEC 155583273 + 155583253 155583293 41 CCAGCTCACCCCAGGGACACCTCCACCCTCTGCCCTTCATG CCAGCTCACCCCAGGAACACCTCCACCCTCTGCCCTTCATG < 41bp 1 0.660804023765386 1 0.857155561447144 experiment 0.678391952469228 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155583273 chr1:155583268 synonymous SNV . 0 16 hm5C_associated_SNPs_44783 0 0 0 0 3 MSTO1 chr1:155583253 3'AG 155583253 Downstream 16bp
chr1 155583268 155583268 1 + G A UCEC 155583273 + 155583253 155583293 41 CCAGCTCACCCCAGGGACACCTCCACCCTCTGCCCTTCATG CCAGCTCACCCCAGGAACACCTCCACCCTCTGCCCTTCATG < 41bp 1 0.660804023765386 1 0.857155561447144 experiment 0.678391952469228 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155583273 chr1:155583268 synonymous SNV . 0 16 hm5C_associated_SNPs_44783 0 0 0 0 3 MSTO1 chr1:155583357 5'GT 155583357 Upstream 90bp
chrX 64956747 64956747 1 + G T UCEC 64956736 + 64956716 64956756 41 TTGAACGGGAGAAGGAGGAGCTGATGGAGAGGCTGAAGCAG TTGAACGGGAGAAGGAGGAGCTGATGGAGAGTCTGAAGCAG < 41bp 1 0.393441401839894 1 0.319944083690643 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956736 chrX:64956747 nonsynonymous SNV 0.994 2 32 hm5C_associated_SNPs_44785 0 0 1 0 2 MSN chrX:64956657 3'AG 64956657 Downstream 91bp
chrX 64956747 64956747 1 + G T UCEC 64956736 + 64956716 64956756 41 TTGAACGGGAGAAGGAGGAGCTGATGGAGAGGCTGAAGCAG TTGAACGGGAGAAGGAGGAGCTGATGGAGAGTCTGAAGCAG < 41bp 1 0.393441401839894 1 0.319944083690643 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956736 chrX:64956747 nonsynonymous SNV 0.994 2 32 hm5C_associated_SNPs_44785 0 0 1 0 2 MSN chrX:64956787 5'GT 64956787 Upstream 41bp
chr10 43971256 43971256 1 + G T UCEC 43971248 + 43971228 43971268 41 GGACTCTGCTCAGAGGACCCCGTACAGAGACATGATGCTGG GGACTCTGCTCAGAGGACCCCGTACAGATACATGATGCTGG < 41bp 1 0.369368529406463 1 0.369012057781219 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF487 ENSG00000243660 CDS Human protein_coding chr10:43971248 chr10:43971256 nonsynonymous SNV . 0 29 hm5C_associated_SNPs_44786 0 0 0 0 2 ZNF487 chr10:43971169 3'AG 43971169 Downstream 88bp
chr10 43971256 43971256 1 + G T UCEC 43971248 + 43971228 43971268 41 GGACTCTGCTCAGAGGACCCCGTACAGAGACATGATGCTGG GGACTCTGCTCAGAGGACCCCGTACAGATACATGATGCTGG < 41bp 1 0.369368529406463 1 0.369012057781219 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF487 ENSG00000243660 CDS Human protein_coding chr10:43971248 chr10:43971256 nonsynonymous SNV . 0 29 hm5C_associated_SNPs_44786 0 0 0 0 2 ZNF487 chr10:43971295 5'GT 43971295 Upstream 40bp
chr14 37754622 37754622 1 + G A UCEC 37754619 + 37754599 37754639 41 GGAGAGAGATGAAGCAATTGCACGAGCCAAGCATATGGAAA GGAGAGAGATGAAGCAATTGCACAAGCCAAGCATATGGAAA < 41bp 1 0.306157351703745 1 0.33117488026619 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MIPOL1 ENSG00000151338 CDS Human protein_coding chr14:37754619 chr14:37754622 nonsynonymous SNV 0.872 0 24 hm5C_associated_SNPs_44787 0 0 1 0 1 MIPOL1 chr14:37754523 3'AG 37754523 Downstream 100bp
chr15 75949310 75949310 1 + C T UCEC 75949304 + 75949284 75949324 41 TCTGCTCTGCCTATGCCAGGCGCCTTCGCCAAGGTGAAGGA TCTGCTCTGCCTATGCCAGGCGCCTTTGCCAAGGTGAAGGA < 41bp 1 0.450695332254601 1 0.181981831789017 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SNX33 ENSG00000173548 CDS Human protein_coding chr15:75949304 chr15:75949310 synonymous SNV . 0 27 hm5C_associated_SNPs_44788 0 0 1 0 1 SNX33 chr15:75949303 3'AG 75949303 Downstream 8bp
chr12 78520976 78520976 1 + A C UCEC 78520959 + 78520939 78520979 41 TTTAACAGCATGCAGCTTGACAGAAATACACTACCCAAAAA TTTAACAGCATGCAGCTTGACAGAAATACACTACCCACAAA < 41bp 1 0.434158822633706 1 0.231643617153168 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAV3 ENSG00000067798 CDS Human protein_coding chr12:78520959 chr12:78520976 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_44790 0 0 0 0 2 NAV3 chr12:78520947 3'AG 78520947 Downstream 30bp
chr12 78520976 78520976 1 + A C UCEC 78520959 + 78520939 78520979 41 TTTAACAGCATGCAGCTTGACAGAAATACACTACCCAAAAA TTTAACAGCATGCAGCTTGACAGAAATACACTACCCACAAA < 41bp 1 0.434158822633706 1 0.231643617153168 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAV3 ENSG00000067798 CDS Human protein_coding chr12:78520959 chr12:78520976 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_44790 0 0 0 0 2 NAV3 chr12:78520988 5'GT 78520988 Upstream 13bp
chr1 32620273 32620273 1 + G T UCEC 32620253 + 32620233 32620273 41 TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAG TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAT < 41bp 1 0.190475095376351 1 0.119779229164124 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620253 chr1:32620273 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_44792 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 85bp
chr1 32620273 32620273 1 + G T UCEC 32620253 + 32620233 32620273 41 TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAG TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAT < 41bp 1 0.190475095376351 1 0.119779229164124 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620253 chr1:32620273 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_44792 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 50bp
chr1 32620273 32620273 1 + G T UCEC 32620254 + 32620234 32620274 41 ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAGA ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAATA < 41bp 1 0.28977049477 1 0.308539927005768 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620254 chr1:32620273 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_44793 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 85bp
chr1 32620273 32620273 1 + G T UCEC 32620254 + 32620234 32620274 41 ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAGA ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAATA < 41bp 1 0.28977049477 1 0.308539927005768 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620254 chr1:32620273 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_44793 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 50bp
chr18 34289310 34289310 1 + A G UCEC 34289293 + 34289273 34289313 41 TCTGCCTCCAGCGTCTCGTCCTCCAGCAGCACGTTGGAGAG TCTGCCTCCAGCGTCTCGTCCTCCAGCAGCACGTTGGGGAG < 41bp 1 0.764151457422478 1 0.980471730232239 experiment 0.471697085155045 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34289293 chr18:34289310 nonsynonymous SNV 0.998 4 38 hm5C_associated_SNPs_44795 0 0 0 0 1 FHOD3 chr18:34289354 5'GT 34289354 Upstream 45bp
chr4 166408640 166408640 1 + G A UCEC 166408636 + 166408616 166408656 41 AGCAACTGTTTTGAGATCACCGTGGAGCTTAGCTGTGAGAA AGCAACTGTTTTGAGATCACCGTGAAGCTTAGCTGTGAGAA < 41bp 1 0.639866595740418 1 0.612635791301727 experiment 0.720266808519164 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CPE ENSG00000109472 CDS Human protein_coding chr4:166408636 chr4:166408640 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_44797 0 0 1 0 2 CPE chr4:166408590 3'AG 166408590 Downstream 51bp
chr4 166408640 166408640 1 + G A UCEC 166408636 + 166408616 166408656 41 AGCAACTGTTTTGAGATCACCGTGGAGCTTAGCTGTGAGAA AGCAACTGTTTTGAGATCACCGTGAAGCTTAGCTGTGAGAA < 41bp 1 0.639866595740418 1 0.612635791301727 experiment 0.720266808519164 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CPE ENSG00000109472 CDS Human protein_coding chr4:166408636 chr4:166408640 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_44797 0 0 1 0 2 CPE chr4:166408729 5'GT 166408729 Upstream 90bp
chr15 57545617 57545617 1 + C A UCEC 57545632 + 57545612 57545652 41 CAATTCAAACTATGGAGGATCAAGCCTTGTTGCAAGCAGTC CAATTAAAACTATGGAGGATCAAGCCTTGTTGCAAGCAGTC < 41bp 1 0.229444572456626 1 0.356426477432251 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57545632 chr15:57545617 stopgain 1.000 0 6 hm5C_associated_SNPs_44801 0 0 1 0 1 TCF12 chr15:57545666 5'GT 57545666 Upstream 50bp
chr15 81173443 81173443 1 + G A UCEC 81173448 + 81173428 81173468 41 ATTGTTCATGTCATCGACCCCAAATCAGGCACAGTCATCCA ATTGTTCATGTCATCAACCCCAAATCAGGCACAGTCATCCA < 41bp 1 0.125273406164073 1 0.126383244991302 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81173448 chr15:81173443 nonsynonymous SNV 0.132 0 16 hm5C_associated_SNPs_44802 0 0 0 0 1 CEMIP chr15:81173477 5'GT 81173477 Upstream 35bp
chr2 189873885 189873885 1 + C A UCEC 189873898 + 189873878 189873918 41 GATGGTTCTCGTAAAAACCCCGCTAGAAACTGCAGAGACCT GATGGTTATCGTAAAAACCCCGCTAGAAACTGCAGAGACCT < 41bp 1 0.339520034568657 1 0.152199298143387 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189873898 chr2:189873885 nonsynonymous SNV 0.981 3 8 hm5C_associated_SNPs_44804 0 0 0 0 1 COL3A1 chr2:189873947 5'GT 189873947 Upstream 63bp
chr14 71434938 71434938 1 + T C UCEC 71434922 + 71434902 71434942 41 GTCACGTTTTCAGATTGGATCTGGTTCCTCGCGTCTTGGAA GTCACGTTTTCAGATTGGATCTGGTTCCTCGCGTCTCGGAA < 41bp 1 0.184662361078267 1 0.53335964679718 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71434922 chr14:71434938 synonymous SNV . 0 37 hm5C_associated_SNPs_44805 0 0 1 0 2 PCNX1 chr14:71434915 3'AG 71434915 Downstream 24bp
chr14 71434938 71434938 1 + T C UCEC 71434922 + 71434902 71434942 41 GTCACGTTTTCAGATTGGATCTGGTTCCTCGCGTCTTGGAA GTCACGTTTTCAGATTGGATCTGGTTCCTCGCGTCTCGGAA < 41bp 1 0.184662361078267 1 0.53335964679718 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71434922 chr14:71434938 synonymous SNV . 0 37 hm5C_associated_SNPs_44805 0 0 1 0 2 PCNX1 chr14:71434960 5'GT 71434960 Upstream 23bp
chr3 39152437 39152437 1 + C T UCEC 39152446 + 39152426 39152466 41 TTTTCCTCTGGCTCATAGGCCGCCATGACAAGGCCAAAGAG TTTTCCTCTGGTTCATAGGCCGCCATGACAAGGCCAAAGAG < 41bp 1 0.668594743536576 1 0.380758047103882 experiment 0.662810512926849 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTC21A ENSG00000168026 CDS Human protein_coding chr3:39152446 chr3:39152437 nonsynonymous SNV 0.749 0 12 hm5C_associated_SNPs_44806 0 0 0 0 2 TTC21A chr3:39152342 3'AG 39152342 Downstream 96bp
chr3 39152437 39152437 1 + C T UCEC 39152446 + 39152426 39152466 41 TTTTCCTCTGGCTCATAGGCCGCCATGACAAGGCCAAAGAG TTTTCCTCTGGTTCATAGGCCGCCATGACAAGGCCAAAGAG < 41bp 1 0.668594743536576 1 0.380758047103882 experiment 0.662810512926849 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTC21A ENSG00000168026 CDS Human protein_coding chr3:39152446 chr3:39152437 nonsynonymous SNV 0.749 0 12 hm5C_associated_SNPs_44806 0 0 0 0 2 TTC21A chr3:39152508 5'GT 39152508 Upstream 72bp
chr12 104332150 104332150 1 + A G UCEC 104332136 + 104332116 104332156 41 AGACTGAAACTGTTGAGGAGCCCATGGAGGAAGAAGAAGCA AGACTGAAACTGTTGAGGAGCCCATGGAGGAAGAGGAAGCA < 41bp 1 0.1187570115198 1 0.0831471681594849 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104332136 chr12:104332150 synonymous SNV . 0 35 hm5C_associated_SNPs_44809 0 0 1 0 3 HSP90B1 chr12:104332118 3'AG 104332118 Downstream 33bp
chr12 104332150 104332150 1 + A G UCEC 104332136 + 104332116 104332156 41 AGACTGAAACTGTTGAGGAGCCCATGGAGGAAGAAGAAGCA AGACTGAAACTGTTGAGGAGCCCATGGAGGAAGAGGAAGCA < 41bp 1 0.1187570115198 1 0.0831471681594849 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104332136 chr12:104332150 synonymous SNV . 0 35 hm5C_associated_SNPs_44809 0 0 1 0 3 HSP90B1 chr12:104332195 5'GT 104332195 Upstream 46bp
chr12 104332150 104332150 1 + A G UCEC 104332136 + 104332116 104332156 41 AGACTGAAACTGTTGAGGAGCCCATGGAGGAAGAAGAAGCA AGACTGAAACTGTTGAGGAGCCCATGGAGGAAGAGGAAGCA < 41bp 1 0.1187570115198 1 0.0831471681594849 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104332136 chr12:104332150 synonymous SNV . 0 35 hm5C_associated_SNPs_44809 0 0 1 0 3 HSP90B1 chr12:104332237 5'GT 104332237 Upstream 88bp
chr19 8321901 8321901 1 + C T UCEC 8321902 + 8321882 8321922 41 CCTTCTCCTACAGTGCCAACCTGCTGCGCATTGGCTCTCTG CCTTCTCCTACAGTGCCAATCTGCTGCGCATTGGCTCTCTG < 41bp 1 0.554165372749432 1 0.485648810863495 experiment 0.891669254501135 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS4 ENSG00000090661 CDS Human protein_coding chr19:8321902 chr19:8321901 synonymous SNV . 0 20 hm5C_associated_SNPs_44810 0 0 0 0 2 CERS4 chr19:8321833 3'AG 8321833 Downstream 69bp
chr19 8321901 8321901 1 + C T UCEC 8321902 + 8321882 8321922 41 CCTTCTCCTACAGTGCCAACCTGCTGCGCATTGGCTCTCTG CCTTCTCCTACAGTGCCAATCTGCTGCGCATTGGCTCTCTG < 41bp 1 0.554165372749432 1 0.485648810863495 experiment 0.891669254501135 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS4 ENSG00000090661 CDS Human protein_coding chr19:8321902 chr19:8321901 synonymous SNV . 0 20 hm5C_associated_SNPs_44810 0 0 0 0 2 CERS4 chr19:8321961 5'GT 8321961 Upstream 61bp
chr4 187122468 187122468 1 + G A UCEC 187122449 + 187122429 187122469 41 CTGATGACGAAGGGAACAGGCTAAGTCATGAAGATATTCGA CTGATGACGAAGGGAACAGGCTAAGTCATGAAGATATTCAA < 41bp 1 0.465770522013726 1 0.0917392671108246 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CYP4V2 ENSG00000145476 CDS Human protein_coding chr4:187122449 chr4:187122468 nonsynonymous SNV 0.939 1 40 hm5C_associated_SNPs_44811 0 0 1 0 1 CYP4V2 chr4:187122496 5'GT 187122496 Upstream 29bp
chrX 9661229 9661229 1 + T C UCEC 9661244 + 9661224 9661264 41 CGGTTTTGCAAGAATATGGACGGAAGATGGTGAGTTCTGTG CGGTTCTGCAAGAATATGGACGGAAGATGGTGAGTTCTGTG < 41bp 1 0.46962320625562 1 0.220736593008041 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBL1X ENSG00000101849 CDS Human protein_coding chrX:9661244 chrX:9661229 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_44812 0 0 1 0 2 TBL1X chrX:9661189 3'AG 9661189 Downstream 41bp
chrX 9661229 9661229 1 + T C UCEC 9661244 + 9661224 9661264 41 CGGTTTTGCAAGAATATGGACGGAAGATGGTGAGTTCTGTG CGGTTCTGCAAGAATATGGACGGAAGATGGTGAGTTCTGTG < 41bp 1 0.46962320625562 1 0.220736593008041 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBL1X ENSG00000101849 CDS Human protein_coding chrX:9661244 chrX:9661229 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_44812 0 0 1 0 2 TBL1X chrX:9661252 5'GT 9661252 Upstream 24bp
chr3 160137300 160137300 1 + C A UCEC 160137312 + 160137292 160137332 41 AAAAAAATCTGGCAGGATTCCAGGAATATATGGAAGATTGG AAAAAAATATGGCAGGATTCCAGGAATATATGGAAGATTGG < 41bp 1 0.793399593791306 1 0.566958665847778 experiment 0.413200812417388 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160137312 chr3:160137300 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_44813 0 0 1 0 1 SMC4 chr3:160137331 5'GT 160137331 Upstream 32bp
chr6 52288760 52288760 1 + G A UCEC 52288769 + 52288749 52288789 41 AGCCTTCCACAGAAGTCAGACGCTGAGCTACAGGAACGGCT AGCCTTCCACAAAAGTCAGACGCTGAGCTACAGGAACGGCT < 41bp 1 0.208207186102591 1 0.335291802883148 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52288769 chr6:52288760 nonsynonymous SNV 0.994 1 12 hm5C_associated_SNPs_44814 0 0 0 0 1 EFHC1 chr6:52288744 3'AG 52288744 Downstream 17bp
chr22 31658762 31658762 1 + G T UCEC 31658771 + 31658751 31658791 41 GGGGACACTGAGGAGACGTTCCCTAAGGTGCCACCTCCCAC GGGGACACTGATGAGACGTTCCCTAAGGTGCCACCTCCCAC < 41bp 1 0.317271212514065 1 0.032497376203537 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31658771 chr22:31658762 nonsynonymous SNV 0.998 4 12 hm5C_associated_SNPs_44815 0 0 1 0 1 LIMK2 chr22:31658777 5'GT 31658777 Upstream 16bp
chr12 94563013 94563013 1 + G A UCEC 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATCCATTCCGACCTGACATCCGTTTATGGCACCATGGTAAT < 41bp 1 0.0537423904188249 1 0.0526050925254822 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94563013 nonsynonymous SNV 0.999 2 34 hm5C_associated_SNPs_44816 0 0 1 0 2 PLXNC1 chr12:94562929 3'AG 94562929 Downstream 85bp
chr12 94563013 94563013 1 + G A UCEC 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATCCATTCCGACCTGACATCCGTTTATGGCACCATGGTAAT < 41bp 1 0.0537423904188249 1 0.0526050925254822 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94563013 nonsynonymous SNV 0.999 2 34 hm5C_associated_SNPs_44816 0 0 1 0 2 PLXNC1 chr12:94563069 5'GT 94563069 Upstream 57bp
chr20 21312442 21312442 1 + T C UCEC 21312451 + 21312431 21312471 41 TCATCATTGTTTATGTGGAGCAGATGGTAAGTTTCTTCTTT TCATCATTGTTCATGTGGAGCAGATGGTAAGTTTCTTCTTT < 41bp 1 0.268151884373648 1 0.0526235699653625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XRN2 ENSG00000088930 CDS Human protein_coding chr20:21312451 chr20:21312442 nonsynonymous SNV 0.998 4 12 hm5C_associated_SNPs_44817 0 0 1 0 2 XRN2 chr20:21312406 3'AG 21312406 Downstream 37bp
chr20 21312442 21312442 1 + T C UCEC 21312451 + 21312431 21312471 41 TCATCATTGTTTATGTGGAGCAGATGGTAAGTTTCTTCTTT TCATCATTGTTCATGTGGAGCAGATGGTAAGTTTCTTCTTT < 41bp 1 0.268151884373648 1 0.0526235699653625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XRN2 ENSG00000088930 CDS Human protein_coding chr20:21312451 chr20:21312442 nonsynonymous SNV 0.998 4 12 hm5C_associated_SNPs_44817 0 0 1 0 2 XRN2 chr20:21312456 5'GT 21312456 Upstream 15bp
chr15 40269025 40269025 1 + C T UCEC 40269028 + 40269008 40269048 41 GAGGACGAGCACGGTGGCGTCTTCTCCCAGTCCTTCCTGTA GAGGACGAGCACGGTGGTGTCTTCTCCCAGTCCTTCCTGTA < 41bp 1 0.350227552216246 1 0.110062569379807 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40269028 chr15:40269025 synonymous SNV . 0 18 hm5C_associated_SNPs_44818 0 0 1 0 1 EIF2AK4 chr15:40269045 5'GT 40269045 Upstream 21bp
chrX 70517767 70517767 1 + C A UCEC 70517781 + 70517761 70517801 41 AGGATTCAAGGGAACCTTCCCTGATGCGGTATATCTCCCAT AGGATTAAAGGGAACCTTCCCTGATGCGGTATATCTCCCAT < 41bp 1 0.653137936965939 1 0.12215855717659 experiment 0.693724126068121 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517781 chrX:70517767 nonsynonymous SNV 0.999 1 7 hm5C_associated_SNPs_44819 0 0 1 0 2 NONO chrX:70517686 3'AG 70517686 Downstream 82bp
chrX 70517767 70517767 1 + C A UCEC 70517781 + 70517761 70517801 41 AGGATTCAAGGGAACCTTCCCTGATGCGGTATATCTCCCAT AGGATTAAAGGGAACCTTCCCTGATGCGGTATATCTCCCAT < 41bp 1 0.653137936965939 1 0.12215855717659 experiment 0.693724126068121 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517781 chrX:70517767 nonsynonymous SNV 0.999 1 7 hm5C_associated_SNPs_44819 0 0 1 0 2 NONO chrX:70517788 5'GT 70517788 Upstream 22bp
chr2 55461997 55461997 1 + C T UCEC 55461979 + 55461959 55461999 41 ATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGT ATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGACTTTGT < 41bp 1 0.153212388645333 1 0.0407131910324097 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461979 chr2:55461997 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_44820 0 0 1 3 1 RPS27A chr2:55461967 3'AG 55461967 Downstream 31bp
chr2 55461997 55461997 1 + C T UCEC 55462007 + 55461987 55462027 41 GTTGAGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGT GTTGAGACTTTGTGGTGGTGCTAAGAAAAGGAAGAAGAAGT < 41bp 1 0.410412655487547 1 0.187788993120193 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55462007 chr2:55461997 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_44821 0 0 1 3 1 RPS27A chr2:55461967 3'AG 55461967 Downstream 31bp
chr11 130013304 130013304 1 + G T UCEC 130013308 + 130013288 130013328 41 AGAACCATGGCTATGAGAACCCCACCTACAAATACCTGGAG AGAACCATGGCTATGATAACCCCACCTACAAATACCTGGAG < 41bp 1 0.178141053563498 1 0.568044781684875 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130013308 chr11:130013304 nonsynonymous SNV 0.996 5 17 hm5C_associated_SNPs_44822 0 0 1 0 1 APLP2 chr11:130013242 3'AG 130013242 Downstream 63bp
chr2 169626103 169626103 1 + G A UCEC 169626121 + 169626101 169626141 41 GCGACAACCACCAATGGGACCAGTGGTACCAACGGGTATCT GCAACAACCACCAATGGGACCAGTGGTACCAACGGGTATCT < 41bp 1 0.337729105379097 1 0.17455866932869 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169626121 chr2:169626103 synonymous SNV . 0 3 hm5C_associated_SNPs_44823 0 0 1 0 1 CERS6 chr2:169626020 3'AG 169626020 Downstream 84bp
chr10 70723156 70723156 1 + C A UCEC 70723167 + 70723147 70723187 41 GACATTCTCCTTTGCCATCCCTTTGATTGAGAAACTTCATG GACATTCTCATTTGCCATCCCTTTGATTGAGAAACTTCATG < 41bp 1 0.127794527698398 1 0.0656410753726959 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX21 ENSG00000165732 CDS Human protein_coding chr10:70723167 chr10:70723156 synonymous SNV . 0 10 hm5C_associated_SNPs_44824 0 0 1 0 1 DDX21 chr10:70723225 5'GT 70723225 Upstream 70bp
chr7 27827102 27827102 1 + T A UCEC 27827088 + 27827068 27827108 41 CCAAGCTTATGTCAGAGGTCCAGACTTTAAAAAATTTAGAT CCAAGCTTATGTCAGAGGTCCAGACTTTAAAAAAATTAGAT < 41bp 1 0.115160161530281 1 0.342726767063141 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27827088 chr7:27827102 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_44825 0 0 1 0 1 TAX1BP1 chr7:27827037 3'AG 27827037 Downstream 66bp
chr4 186244868 186244868 1 + T C UCEC 186244882 + 186244862 186244902 41 CCTTCATTTATTGTCAGTGACCTGTATGAGAAATTGTTGAT CCTTCACTTATTGTCAGTGACCTGTATGAGAAATTGTTGAT < 41bp 1 0.108175453917414 1 0.0949963629245758 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX25 ENSG00000109762 CDS Human protein_coding chr4:186244882 chr4:186244868 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_44826 0 0 1 0 1 SNX25 chr4:186244954 5'GT 186244954 Upstream 87bp
chr5 64881996 64881996 1 + G T UCEC 64881981 + 64881961 64882001 41 GGATCAAATACTAATGGATCCCAGTTTTTCATAACGGTAGT GGATCAAATACTAATGGATCCCAGTTTTTCATAACTGTAGT < 41bp 1 0.261085662270545 1 0.207440108060837 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPWD1 ENSG00000113593 CDS Human protein_coding chr5:64881981 chr5:64881996 synonymous SNV . 0 36 hm5C_associated_SNPs_44828 0 0 1 0 1 PPWD1 chr5:64882008 5'GT 64882008 Upstream 13bp
chr7 129029014 129029014 1 + G A UCEC 129029013 + 129028993 129029033 41 TCAAACAGGCAGAGTTTGGACGAAGAGAAATTGAAATTGCT TCAAACAGGCAGAGTTTGGACAAAGAGAAATTGAAATTGCT < 41bp 1 0.2396139006122 1 0.213562518358231 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129029013 chr7:129029014 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_44829 0 0 1 0 1 AHCYL2 chr7:129029040 5'GT 129029040 Upstream 27bp
chr12 53415606 53415606 1 + G T UCEC 53415587 + 53415567 53415607 41 TTAATATGGTCCTATGCTCTCAGTCTCTAGGTAACAGGAGA TTAATATGGTCCTATGCTCTCAGTCTCTAGGTAACAGGATA < 41bp 1 0.117830127920778 1 0.559636116027832 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout EIF4B ENSG00000063046 CDS Human protein_coding chr12:53415587 chr12:53415606 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_44830 0 0 1 0 2 EIF4B chr12:53415590 3'AG 53415590 Downstream 17bp
chr12 53415606 53415606 1 + G T UCEC 53415587 + 53415567 53415607 41 TTAATATGGTCCTATGCTCTCAGTCTCTAGGTAACAGGAGA TTAATATGGTCCTATGCTCTCAGTCTCTAGGTAACAGGATA < 41bp 1 0.117830127920778 1 0.559636116027832 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout EIF4B ENSG00000063046 CDS Human protein_coding chr12:53415587 chr12:53415606 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_44830 0 0 1 0 2 EIF4B chr12:53415644 5'GT 53415644 Upstream 39bp
chr8 22106596 22106596 1 + T G UCEC 22106604 + 22106584 22106624 41 AAGAGGCCAAGATGAAGGCTCCTCCCAAAGCAGCCAGGAAG AAGAGGCCAAGAGGAAGGCTCCTCCCAAAGCAGCCAGGAAG < 41bp 1 0.023242012754796 1 0.0789967477321625 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POLR3D ENSG00000168495 CDS Human protein_coding chr8:22106604 chr8:22106596 nonsynonymous SNV 0.998 0 13 hm5C_associated_SNPs_44831 0 0 1 0 1 POLR3D chr8:22106557 3'AG 22106557 Downstream 40bp
chr5 147585602 147585602 1 + T C UCEC 147585619 + 147585599 147585639 41 GTGTCTTCAGTCAGGGAGGACAGGTCAGTGCCTATTTTTAT GTGCCTTCAGTCAGGGAGGACAGGTCAGTGCCTATTTTTAT < 41bp 1 0.598950609656128 1 0.482435286045074 experiment 0.802098780687744 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPINK6 ENSG00000178172 CDS Human protein_coding chr5:147585619 chr5:147585602 nonsynonymous SNV 0.990 0 4 hm5C_associated_SNPs_44833 0 0 1 0 2 SPINK6 chr5:147585599 3'AG 147585599 Downstream 4bp
chr5 147585602 147585602 1 + T C UCEC 147585619 + 147585599 147585639 41 GTGTCTTCAGTCAGGGAGGACAGGTCAGTGCCTATTTTTAT GTGCCTTCAGTCAGGGAGGACAGGTCAGTGCCTATTTTTAT < 41bp 1 0.598950609656128 1 0.482435286045074 experiment 0.802098780687744 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPINK6 ENSG00000178172 CDS Human protein_coding chr5:147585619 chr5:147585602 nonsynonymous SNV 0.990 0 4 hm5C_associated_SNPs_44833 0 0 1 0 2 SPINK6 chr5:147585621 5'GT 147585621 Upstream 20bp
chr6 170865981 170865981 1 + C A UCEC 170865967 + 170865947 170865987 41 CTTTAGACTTTTTTCCAAAGCAGCATCACTGTTTCTTGGCG CTTTAGACTTTTTTCCAAAGCAGCATCACTGTTTATTGGCG < 41bp 1 0.433204248084397 1 0.126049101352692 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBP ENSG00000112592 UTR5 Human protein_coding chr6:170865967 chr6:170865981 . . 0 35 hm5C_associated_SNPs_44834 0 0 1 0 1 TBP chr6:170865967 3'AG 170865967 Downstream 15bp
chr4 103806586 103806586 1 + C T UCEC 103806576 + 103806556 103806596 41 CAGCTTATTGTAGGTGTTGGCGTTCTAAAACGGTAAGATGT CAGCTTATTGTAGGTGTTGGCGTTCTAAAATGGTAAGATGT < 41bp 1 0.0671182319765818 1 0.477890253067017 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CISD2 ENSG00000145354 CDS Human protein_coding chr4:103806576 chr4:103806586 nonsynonymous SNV 0.991 4 31 hm5C_associated_SNPs_44835 0 0 1 0 1 CISD2 chr4:103806587 5'GT 103806587 Upstream 2bp
chr22 41322427 41322427 1 + C T UCEC 41322444 + 41322424 41322464 41 CAGCCAGGCTTCTTGACCTTCACTGCGGCCCACATGCACCT CAGTCAGGCTTCTTGACCTTCACTGCGGCCCACATGCACCT < 41bp 1 0.310356458106417 1 0.324661612510681 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient XPNPEP3 ENSG00000196236 CDS Human protein_coding chr22:41322444 chr22:41322427 synonymous SNV . 0 4 hm5C_associated_SNPs_44836 0 0 1 0 1 XPNPEP3 chr22:41322467 5'GT 41322467 Upstream 41bp
chr8 132968094 132968094 1 + G T UCEC 132968077 + 132968057 132968097 41 AGAGAATCCTGCTGTGCTGGCTGAAAACTGTTTCAGAGAAC AGAGAATCCTGCTGTGCTGGCTGAAAACTGTTTCAGATAAC < 41bp 1 0.71142080226144 1 0.498009771108627 experiment 0.57715839547712 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFR3A ENSG00000132294 CDS Human protein_coding chr8:132968077 chr8:132968094 stopgain 0.998 1 38 hm5C_associated_SNPs_44837 0 0 0 0 2 EFR3A chr8:132968015 3'AG 132968015 Downstream 80bp
chr8 132968094 132968094 1 + G T UCEC 132968077 + 132968057 132968097 41 AGAGAATCCTGCTGTGCTGGCTGAAAACTGTTTCAGAGAAC AGAGAATCCTGCTGTGCTGGCTGAAAACTGTTTCAGATAAC < 41bp 1 0.71142080226144 1 0.498009771108627 experiment 0.57715839547712 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFR3A ENSG00000132294 CDS Human protein_coding chr8:132968077 chr8:132968094 stopgain 0.998 1 38 hm5C_associated_SNPs_44837 0 0 0 0 2 EFR3A chr8:132968152 5'GT 132968152 Upstream 59bp
chr20 30898921 30898921 1 + G T UCEC 30898904 + 30898884 30898924 41 TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGAGAAA TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGATAAA < 41bp 1 0.464369904579788 1 0.249228298664093 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898904 chr20:30898921 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_44839 0 0 1 0 3 KIF3B chr20:30898832 3'AG 30898832 Downstream 90bp
chr20 30898921 30898921 1 + G T UCEC 30898904 + 30898884 30898924 41 TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGAGAAA TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGATAAA < 41bp 1 0.464369904579788 1 0.249228298664093 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898904 chr20:30898921 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_44839 0 0 1 0 3 KIF3B chr20:30898890 3'AG 30898890 Downstream 32bp
chr20 30898921 30898921 1 + G T UCEC 30898904 + 30898884 30898924 41 TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGAGAAA TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGATAAA < 41bp 1 0.464369904579788 1 0.249228298664093 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898904 chr20:30898921 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_44839 0 0 1 0 3 KIF3B chr20:30898984 5'GT 30898984 Upstream 64bp
chr6 47576993 47576993 1 + G A UCEC 47576982 + 47576962 47577002 41 AAAAAAATTCCCTGGATGAACTTAGAGCCCAGATTATTGAA AAAAAAATTCCCTGGATGAACTTAGAGCCCAAATTATTGAA < 41bp 1 0.228014490000563 1 0.064485639333725 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47576982 chr6:47576993 synonymous SNV . 0 32 hm5C_associated_SNPs_44840 0 0 1 0 1 CD2AP chr6:47577040 5'GT 47577040 Upstream 48bp
chr5 71648510 71648510 1 + A C UCEC 71648516 + 71648496 71648536 41 TGGAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA TGGAAAACCTGATACAGACTCTAAAAAATGCTGCAGAAGGA < 41bp 1 0.462705151963826 1 0.701010763645172 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71648516 chr5:71648510 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_44842 0 0 1 3 2 PTCD2 chr5:71648468 3'AG 71648468 Downstream 43bp
chr5 71648510 71648510 1 + A C UCEC 71648516 + 71648496 71648536 41 TGGAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA TGGAAAACCTGATACAGACTCTAAAAAATGCTGCAGAAGGA < 41bp 1 0.462705151963826 1 0.701010763645172 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71648516 chr5:71648510 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_44842 0 0 1 3 2 PTCD2 chr5:71648581 5'GT 71648581 Upstream 72bp
chr1 231401124 231401124 1 + C A UCEC 231401132 + 231401112 231401152 41 TGGCAATAAACTCTACTGGGCTGTATTCTCTGAATATGTAA TGGCAATAAACTATACTGGGCTGTATTCTCTGAATATGTAA < 41bp 1 0.365126492927805 1 0.032417893409729 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231401132 chr1:231401124 synonymous SNV . 0 13 hm5C_associated_SNPs_44844 0 0 1 0 2 GNPAT chr1:231401039 3'AG 231401039 Downstream 86bp
chr1 231401124 231401124 1 + C A UCEC 231401132 + 231401112 231401152 41 TGGCAATAAACTCTACTGGGCTGTATTCTCTGAATATGTAA TGGCAATAAACTATACTGGGCTGTATTCTCTGAATATGTAA < 41bp 1 0.365126492927805 1 0.032417893409729 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231401132 chr1:231401124 synonymous SNV . 0 13 hm5C_associated_SNPs_44844 0 0 1 0 2 GNPAT chr1:231401166 5'GT 231401166 Upstream 43bp
chr6 47580232 47580232 1 + A C UCEC 47580216 + 47580196 47580236 41 ACTTTGTTTTTAGGAAAGAACTGGAAAAACTGCGAAAAGAT ACTTTGTTTTTAGGAAAGAACTGGAAAAACTGCGAACAGAT < 41bp 1 0.683603703996147 1 0.475735813379288 experiment 0.632792592007705 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47580216 chr6:47580232 nonsynonymous SNV 0.952 0 37 hm5C_associated_SNPs_44845 0 0 1 0 2 CD2AP chr6:47580209 3'AG 47580209 Downstream 24bp
chr6 47580232 47580232 1 + A C UCEC 47580216 + 47580196 47580236 41 ACTTTGTTTTTAGGAAAGAACTGGAAAAACTGCGAAAAGAT ACTTTGTTTTTAGGAAAGAACTGGAAAAACTGCGAACAGAT < 41bp 1 0.683603703996147 1 0.475735813379288 experiment 0.632792592007705 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47580216 chr6:47580232 nonsynonymous SNV 0.952 0 37 hm5C_associated_SNPs_44845 0 0 1 0 2 CD2AP chr6:47580272 5'GT 47580272 Upstream 41bp
chr8 48874235 48874235 1 + C A UCEC 48874231 + 48874211 48874251 41 TTTCCAGCCCTCCCCAAATGCATTCTTCAGGTGCGTGTCTG TTTCCAGCCCTCCCCAAATGCATTATTCAGGTGCGTGTCTG < 41bp 1 0.363836781220791 1 0.0387251377105713 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874231 chr8:48874235 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_44847 0 0 1 0 1 MCM4 chr8:48874240 5'GT 48874240 Upstream 6bp
chr13 21205220 21205220 1 + T C UCEC 21205223 + 21205203 21205243 41 AGTGCAGCTGCAACCAATCTCTCAGCCCTGTATTATATGGT AGTGCAGCTGCAACCAACCTCTCAGCCCTGTATTATATGGT < 41bp 1 0.240878009437356 1 0.36285275220871 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control IFT88 ENSG00000032742 CDS Human protein_coding chr13:21205223 chr13:21205220 synonymous SNV . 0 18 hm5C_associated_SNPs_44848 0 0 0 0 2 IFT88 chr13:21205155 3'AG 21205155 Downstream 66bp
chr13 21205220 21205220 1 + T C UCEC 21205223 + 21205203 21205243 41 AGTGCAGCTGCAACCAATCTCTCAGCCCTGTATTATATGGT AGTGCAGCTGCAACCAACCTCTCAGCCCTGTATTATATGGT < 41bp 1 0.240878009437356 1 0.36285275220871 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control IFT88 ENSG00000032742 CDS Human protein_coding chr13:21205223 chr13:21205220 synonymous SNV . 0 18 hm5C_associated_SNPs_44848 0 0 0 0 2 IFT88 chr13:21205241 5'GT 21205241 Upstream 22bp
chr7 21934387 21934387 1 + A G UCEC 21934397 + 21934377 21934417 41 TTCGGGAAATACGTATATCACTTGAACAACTGGACCTTAGT TTCGGGAAATGCGTATATCACTTGAACAACTGGACCTTAGT < 41bp 1 0.239987466366882 1 0.533310294151306 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21934397 chr7:21934387 nonsynonymous SNV 0.719 0 11 hm5C_associated_SNPs_44849 0 0 0 0 1 DNAH11 chr7:21934423 5'GT 21934423 Upstream 37bp
chr1 62455902 62455902 1 + G T UCEC 62455922 + 62455902 62455942 41 GATAAGAATGGACTTGGACTCAGCCTTGCTGGTAATAAAGA TATAAGAATGGACTTGGACTCAGCCTTGCTGGTAATAAAGA < 41bp 1 0.198430696165771 1 0.461386680603027 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PATJ ENSG00000132849 CDS Human protein_coding chr1:62455922 chr1:62455902 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_44850 0 0 1 0 1 PATJ chr1:62455840 3'AG 62455840 Downstream 63bp
chr6 7566653 7566653 1 + A C UCEC 7566648 + 7566628 7566668 41 GAAGTTAAAGAAAAAGAGCTCAATAAGCTGAAACAAGAAAG GAAGTTAAAGAAAAAGAGCTCAATACGCTGAAACAAGAAAG < 41bp 1 0.128272404204487 1 0.388165682554245 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7566648 chr6:7566653 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_44852 0 0 1 0 2 DSP chr6:7566610 3'AG 7566610 Downstream 44bp
chr6 7566653 7566653 1 + A C UCEC 7566648 + 7566628 7566668 41 GAAGTTAAAGAAAAAGAGCTCAATAAGCTGAAACAAGAAAG GAAGTTAAAGAAAAAGAGCTCAATACGCTGAAACAAGAAAG < 41bp 1 0.128272404204487 1 0.388165682554245 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7566648 chr6:7566653 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_44852 0 0 1 0 2 DSP chr6:7566714 5'GT 7566714 Upstream 62bp
chr3 148562351 148562351 1 + T C UCEC 148562331 + 148562311 148562351 41 ACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGAT ACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGAC < 41bp 1 0.261792849836194 1 0.0842737555503845 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562331 chr3:148562351 synonymous SNV . 0 41 hm5C_associated_SNPs_44853 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 87bp
chr3 148562351 148562351 1 + T C UCEC 148562331 + 148562311 148562351 41 ACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGAT ACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGAC < 41bp 1 0.261792849836194 1 0.0842737555503845 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562331 chr3:148562351 synonymous SNV . 0 41 hm5C_associated_SNPs_44853 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 25bp
chr3 148562351 148562351 1 + T C UCEC 148562334 + 148562314 148562354 41 AGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGC AGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGACGGC < 41bp 1 0.131600478452153 1 0.0866718888282776 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562334 chr3:148562351 synonymous SNV . 0 38 hm5C_associated_SNPs_44854 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 87bp
chr3 148562351 148562351 1 + T C UCEC 148562334 + 148562314 148562354 41 AGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGC AGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGACGGC < 41bp 1 0.131600478452153 1 0.0866718888282776 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562334 chr3:148562351 synonymous SNV . 0 38 hm5C_associated_SNPs_44854 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 25bp
chr3 148562351 148562351 1 + T C UCEC 148562335 + 148562315 148562355 41 GTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGCT GTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGACGGCT < 41bp 1 0.412901595591077 1 0.364202916622162 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562335 chr3:148562351 synonymous SNV . 0 37 hm5C_associated_SNPs_44855 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 87bp
chr3 148562351 148562351 1 + T C UCEC 148562335 + 148562315 148562355 41 GTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGCT GTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGACGGCT < 41bp 1 0.412901595591077 1 0.364202916622162 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562335 chr3:148562351 synonymous SNV . 0 37 hm5C_associated_SNPs_44855 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 25bp
chr3 148562351 148562351 1 + T C UCEC 148562340 + 148562320 148562360 41 ACTTTTATGTCCTGCCTGTGCTCAATATTGATGGCTACATC ACTTTTATGTCCTGCCTGTGCTCAATATTGACGGCTACATC < 41bp 1 0.768376260578997 1 0.0525326132774353 experiment 0.463247478842006 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562340 chr3:148562351 synonymous SNV . 0 32 hm5C_associated_SNPs_44856 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 87bp
chr3 148562351 148562351 1 + T C UCEC 148562340 + 148562320 148562360 41 ACTTTTATGTCCTGCCTGTGCTCAATATTGATGGCTACATC ACTTTTATGTCCTGCCTGTGCTCAATATTGACGGCTACATC < 41bp 1 0.768376260578997 1 0.0525326132774353 experiment 0.463247478842006 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562340 chr3:148562351 synonymous SNV . 0 32 hm5C_associated_SNPs_44856 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 25bp
chr3 148562351 148562351 1 + T C UCEC 148562342 + 148562322 148562362 41 TTTTATGTCCTGCCTGTGCTCAATATTGATGGCTACATCTA TTTTATGTCCTGCCTGTGCTCAATATTGACGGCTACATCTA < 41bp 1 0.720972676070779 1 0.195920437574387 experiment 0.558054647858443 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562342 chr3:148562351 synonymous SNV . 0 30 hm5C_associated_SNPs_44857 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 87bp
chr3 148562351 148562351 1 + T C UCEC 148562342 + 148562322 148562362 41 TTTTATGTCCTGCCTGTGCTCAATATTGATGGCTACATCTA TTTTATGTCCTGCCTGTGCTCAATATTGACGGCTACATCTA < 41bp 1 0.720972676070779 1 0.195920437574387 experiment 0.558054647858443 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562342 chr3:148562351 synonymous SNV . 0 30 hm5C_associated_SNPs_44857 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 25bp
chr3 148562351 148562351 1 + T C UCEC 148562354 + 148562334 148562374 41 CCTGTGCTCAATATTGATGGCTACATCTACACCTGGACCAA CCTGTGCTCAATATTGACGGCTACATCTACACCTGGACCAA < 41bp 1 0.61588283846461 1 0.501412510871887 experiment 0.768234323070779 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562354 chr3:148562351 synonymous SNV . 0 18 hm5C_associated_SNPs_44858 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 87bp
chr3 148562351 148562351 1 + T C UCEC 148562354 + 148562334 148562374 41 CCTGTGCTCAATATTGATGGCTACATCTACACCTGGACCAA CCTGTGCTCAATATTGACGGCTACATCTACACCTGGACCAA < 41bp 1 0.61588283846461 1 0.501412510871887 experiment 0.768234323070779 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562354 chr3:148562351 synonymous SNV . 0 18 hm5C_associated_SNPs_44858 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 25bp
chr3 148562351 148562351 1 + T C UCEC 148562357 + 148562337 148562377 41 GTGCTCAATATTGATGGCTACATCTACACCTGGACCAAGGT GTGCTCAATATTGACGGCTACATCTACACCTGGACCAAGGT < 41bp 1 0.110915547089996 1 0.0806642174720764 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562357 chr3:148562351 synonymous SNV . 0 15 hm5C_associated_SNPs_44859 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 87bp
chr3 148562351 148562351 1 + T C UCEC 148562357 + 148562337 148562377 41 GTGCTCAATATTGATGGCTACATCTACACCTGGACCAAGGT GTGCTCAATATTGACGGCTACATCTACACCTGGACCAAGGT < 41bp 1 0.110915547089996 1 0.0806642174720764 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562357 chr3:148562351 synonymous SNV . 0 15 hm5C_associated_SNPs_44859 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 25bp
chr3 148562351 148562351 1 + T C UCEC 148562360 + 148562340 148562380 41 CTCAATATTGATGGCTACATCTACACCTGGACCAAGGTATA CTCAATATTGACGGCTACATCTACACCTGGACCAAGGTATA < 41bp 1 0.694132630198888 1 0.73963063955307 experiment 0.611734739602223 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562360 chr3:148562351 synonymous SNV . 0 12 hm5C_associated_SNPs_44860 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 87bp
chr3 148562351 148562351 1 + T C UCEC 148562360 + 148562340 148562380 41 CTCAATATTGATGGCTACATCTACACCTGGACCAAGGTATA CTCAATATTGACGGCTACATCTACACCTGGACCAAGGTATA < 41bp 1 0.694132630198888 1 0.73963063955307 experiment 0.611734739602223 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562360 chr3:148562351 synonymous SNV . 0 12 hm5C_associated_SNPs_44860 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 25bp
chr3 148562351 148562351 1 + T C UCEC 148562363 + 148562343 148562383 41 AATATTGATGGCTACATCTACACCTGGACCAAGGTATATGC AATATTGACGGCTACATCTACACCTGGACCAAGGTATATGC < 41bp 1 0.510475146101291 1 0.157802432775497 experiment 0.979049707797418 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562363 chr3:148562351 synonymous SNV . 0 9 hm5C_associated_SNPs_44861 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 87bp
chr3 148562351 148562351 1 + T C UCEC 148562363 + 148562343 148562383 41 AATATTGATGGCTACATCTACACCTGGACCAAGGTATATGC AATATTGACGGCTACATCTACACCTGGACCAAGGTATATGC < 41bp 1 0.510475146101291 1 0.157802432775497 experiment 0.979049707797418 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562363 chr3:148562351 synonymous SNV . 0 9 hm5C_associated_SNPs_44861 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 25bp
chr3 148562351 148562351 1 + T C UCEC 148562365 + 148562345 148562385 41 TATTGATGGCTACATCTACACCTGGACCAAGGTATATGCAC TATTGACGGCTACATCTACACCTGGACCAAGGTATATGCAC < 41bp 1 0.333629022013014 1 0.109319686889648 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562365 chr3:148562351 synonymous SNV . 0 7 hm5C_associated_SNPs_44862 0 0 0 0 2 CPB1 chr3:148562265 3'AG 148562265 Downstream 87bp
chr3 148562351 148562351 1 + T C UCEC 148562365 + 148562345 148562385 41 TATTGATGGCTACATCTACACCTGGACCAAGGTATATGCAC TATTGACGGCTACATCTACACCTGGACCAAGGTATATGCAC < 41bp 1 0.333629022013014 1 0.109319686889648 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562365 chr3:148562351 synonymous SNV . 0 7 hm5C_associated_SNPs_44862 0 0 0 0 2 CPB1 chr3:148562375 5'GT 148562375 Upstream 25bp
chr10 129137320 129137320 1 + T A UCEC 129137333 + 129137313 129137353 41 AAAAAATTTCTGGATCAAGCCAACTTTGAGCTACAGGTAAG AAAAAATATCTGGATCAAGCCAACTTTGAGCTACAGGTAAG < 41bp 1 0.129554147794132 1 0.143285661935806 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129137333 chr10:129137320 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_44863 0 0 0 0 1 DOCK1 chr10:129137348 5'GT 129137348 Upstream 29bp
chr10 129137320 129137320 1 + T A UCEC 129137336 + 129137316 129137356 41 AAATTTCTGGATCAAGCCAACTTTGAGCTACAGGTAAGAGA AAATATCTGGATCAAGCCAACTTTGAGCTACAGGTAAGAGA < 41bp 1 0.0247756325200804 1 0.0501953959465027 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129137336 chr10:129137320 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_44864 0 0 0 0 1 DOCK1 chr10:129137348 5'GT 129137348 Upstream 29bp
chr1 43917106 43917106 1 - G A UCEC 43917100 - 43917080 43917120 41 GGCTACAAAGGCTTCGTGGGCTGTGAGTATCAGCCTCGAGG GGCTACAAAGGCTTTGTGGGCTGTGAGTATCAGCCTCGAGG < 41bp 1 0.284353038940081 1 0.100584179162979 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HYI ENSG00000178922 CDS Human protein_coding chr1:43917100 chr1:43917106 synonymous SNV . 0 15 hm5C_associated_SNPs_44865 0 0 0 0 2 HYI chr1:43917081 5'GT 43917081 Upstream 26bp
chr1 43917106 43917106 1 - G A UCEC 43917100 - 43917080 43917120 41 GGCTACAAAGGCTTCGTGGGCTGTGAGTATCAGCCTCGAGG GGCTACAAAGGCTTTGTGGGCTGTGAGTATCAGCCTCGAGG < 41bp 1 0.284353038940081 1 0.100584179162979 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HYI ENSG00000178922 CDS Human protein_coding chr1:43917100 chr1:43917106 synonymous SNV . 0 15 hm5C_associated_SNPs_44865 0 0 0 0 2 HYI chr1:43917099 5'GT 43917099 Upstream 8bp
chr1 114440545 114440545 1 - C A UCEC 114440557 - 114440537 114440577 41 CCTGTATTGTAGTGGTGGTGCAGACTTTCCGAGACCTGGTT CCTGTATTGTAGTGGTGGTGCAGACTTTCCGATACCTGGTT < 41bp 1 0.439734001011208 1 0.347812861204147 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4B1 ENSG00000134262 CDS Human protein_coding chr1:114440557 chr1:114440545 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_44866 0 0 0 0 2 AP4B1 chr1:114440462 5'GT 114440462 Upstream 84bp
chr1 114440545 114440545 1 - C A UCEC 114440557 - 114440537 114440577 41 CCTGTATTGTAGTGGTGGTGCAGACTTTCCGAGACCTGGTT CCTGTATTGTAGTGGTGGTGCAGACTTTCCGATACCTGGTT < 41bp 1 0.439734001011208 1 0.347812861204147 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4B1 ENSG00000134262 CDS Human protein_coding chr1:114440557 chr1:114440545 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_44866 0 0 0 0 2 AP4B1 chr1:114440565 3'AG 114440565 Downstream 21bp
chr11 4142939 4142939 1 + C A UCEC 4142924 + 4142904 4142944 41 AGAACACAGGAAAGGAAGAGCAGCGTGCCAGAGATCTTTTC AGAACACAGGAAAGGAAGAGCAGCGTGCCAGAGATATTTTC < 41bp 1 0.557447879520019 1 0.464372158050537 experiment 0.885104240959962 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RRM1 ENSG00000167325 CDS Human protein_coding chr11:4142924 chr11:4142939 nonsynonymous SNV 0.995 2 36 hm5C_associated_SNPs_44867 0 0 1 0 1 RRM1 chr11:4142995 5'GT 4142995 Upstream 57bp
chr1 10435347 10435347 1 + G A UCEC 10435355 + 10435335 10435375 41 GCACAAAGCACCGTGGGGTCCTTTTGCAGGCCCTCAATGAC GCACAAAGCACCATGGGGTCCTTTTGCAGGCCCTCAATGAC < 41bp 1 0.0331970968829117 1 0.0328662395477295 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10435355 chr1:10435347 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_44871 0 0 1 0 2 KIF1B chr1:10435313 3'AG 10435313 Downstream 35bp
chr1 10435347 10435347 1 + G A UCEC 10435355 + 10435335 10435375 41 GCACAAAGCACCGTGGGGTCCTTTTGCAGGCCCTCAATGAC GCACAAAGCACCATGGGGTCCTTTTGCAGGCCCTCAATGAC < 41bp 1 0.0331970968829117 1 0.0328662395477295 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10435355 chr1:10435347 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_44871 0 0 1 0 2 KIF1B chr1:10435431 5'GT 10435431 Upstream 85bp
chr12 6646132 6646132 1 + G A UCEC 6646142 + 6646122 6646162 41 CGCTGAGTACGTCGTGGAGTCCACTGGCGTCTTCACCACCA CGCTGAGTACATCGTGGAGTCCACTGGCGTCTTCACCACCA < 41bp 1 0.430653111816148 1 0.098168671131134 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6646142 chr12:6646132 nonsynonymous SNV 0.290 1 11 hm5C_associated_SNPs_44872 0 0 1 0 2 GAPDH chr12:6646086 3'AG 6646086 Downstream 47bp
chr12 6646132 6646132 1 + G A UCEC 6646142 + 6646122 6646162 41 CGCTGAGTACGTCGTGGAGTCCACTGGCGTCTTCACCACCA CGCTGAGTACATCGTGGAGTCCACTGGCGTCTTCACCACCA < 41bp 1 0.430653111816148 1 0.098168671131134 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6646142 chr12:6646132 nonsynonymous SNV 0.290 1 11 hm5C_associated_SNPs_44872 0 0 1 0 2 GAPDH chr12:6646176 5'GT 6646176 Upstream 45bp
chrX 70516427 70516427 1 + T C UCEC 70516419 + 70516399 70516439 41 TTGTTCTTTCTTCCAGATTTCCTCGTCCTGTGACTGTGGAG TTGTTCTTTCTTCCAGATTTCCTCGTCCCGTGACTGTGGAG < 41bp 1 0.106401877503755 1 0.107641935348511 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516419 chrX:70516427 synonymous SNV . 0 29 hm5C_associated_SNPs_44874 0 0 1 0 2 NONO chrX:70516415 3'AG 70516415 Downstream 13bp
chrX 70516427 70516427 1 + T C UCEC 70516419 + 70516399 70516439 41 TTGTTCTTTCTTCCAGATTTCCTCGTCCTGTGACTGTGGAG TTGTTCTTTCTTCCAGATTTCCTCGTCCCGTGACTGTGGAG < 41bp 1 0.106401877503755 1 0.107641935348511 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516419 chrX:70516427 synonymous SNV . 0 29 hm5C_associated_SNPs_44874 0 0 1 0 2 NONO chrX:70516510 5'GT 70516510 Upstream 84bp
chrX 70516427 70516427 1 + T C UCEC 70516440 + 70516420 70516460 41 CTCGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT CTCGTCCCGTGACTGTGGAGCCCATGGACCAGTTAGATGAT < 41bp 1 0.0919851570572079 1 0.0385313928127289 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516440 chrX:70516427 synonymous SNV . 0 8 hm5C_associated_SNPs_44875 0 0 1 0 2 NONO chrX:70516415 3'AG 70516415 Downstream 13bp
chrX 70516427 70516427 1 + T C UCEC 70516440 + 70516420 70516460 41 CTCGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT CTCGTCCCGTGACTGTGGAGCCCATGGACCAGTTAGATGAT < 41bp 1 0.0919851570572079 1 0.0385313928127289 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516440 chrX:70516427 synonymous SNV . 0 8 hm5C_associated_SNPs_44875 0 0 1 0 2 NONO chrX:70516510 5'GT 70516510 Upstream 84bp
chr14 21967277 21967277 1 - C T UCEC 21967278 - 21967258 21967298 41 TAGTTTTTATTTCCTAGGTTCGTTCCACCAGTCATAAACCA TAGTTTTTATTTCCTAGGTTCATTCCACCAGTCATAAACCA < 41bp 1 0.0161813465746111 1 0.0728622376918793 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control METTL3 ENSG00000165819 CDS Human protein_coding chr14:21967278 chr14:21967277 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_44876 0 0 1 0 1 METTL3 chr14:21967281 3'AG 21967281 Downstream 5bp
chr7 130021599 130021599 1 + C T UCEC 130021586 + 130021566 130021606 41 CCACGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGT CCACGGCATCAGCTATGAGACCATGATCGAGGATGTGCAGT < 41bp 1 0.149281217493544 1 0.0365941524505615 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021586 chr7:130021599 synonymous SNV . 0 34 hm5C_associated_SNPs_44877 0 0 0 0 1 CPA1 chr7:130021536 3'AG 130021536 Downstream 64bp
chr7 130021599 130021599 1 + C T UCEC 130021587 + 130021567 130021607 41 CACGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGTC CACGGCATCAGCTATGAGACCATGATCGAGGATGTGCAGTC < 41bp 1 0.685225204037743 1 0.114584743976593 experiment 0.629549591924515 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021587 chr7:130021599 synonymous SNV . 0 33 hm5C_associated_SNPs_44878 0 0 0 0 1 CPA1 chr7:130021536 3'AG 130021536 Downstream 64bp
chr10 91532536 91532536 1 + G A UCEC 91532517 + 91532497 91532537 41 CAAGTAAAGAAAATGTGTCTCAACCAAAACGAGCCAAACGG CAAGTAAAGAAAATGTGTCTCAACCAAAACGAGCCAAACAG < 41bp 1 0.30050524179714 1 0.404503762722015 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control KIF20B ENSG00000138182 CDS Human protein_coding chr10:91532517 chr10:91532536 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_44879 0 0 1 0 2 KIF20B chr10:91532446 3'AG 91532446 Downstream 91bp
chr10 91532536 91532536 1 + G A UCEC 91532517 + 91532497 91532537 41 CAAGTAAAGAAAATGTGTCTCAACCAAAACGAGCCAAACGG CAAGTAAAGAAAATGTGTCTCAACCAAAACGAGCCAAACAG < 41bp 1 0.30050524179714 1 0.404503762722015 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control KIF20B ENSG00000138182 CDS Human protein_coding chr10:91532517 chr10:91532536 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_44879 0 0 1 0 2 KIF20B chr10:91532588 5'GT 91532588 Upstream 53bp
chrX 70360551 70360551 1 + C T UCEC 70360532 + 70360512 70360552 41 ACCCATGATAAGTACCATGACTCCAATGAGTGCCCAGGGCG ACCCATGATAAGTACCATGACTCCAATGAGTGCCCAGGGTG < 41bp 1 0.768361942873917 1 0.887716174125671 experiment 0.463276114252166 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout MED12 ENSG00000184634 CDS Human protein_coding chrX:70360532 chrX:70360551 synonymous SNV . 0 40 hm5C_associated_SNPs_44880 0 0 1 0 1 MED12 chrX:70360485 3'AG 70360485 Downstream 67bp
chr19 49464798 49464798 1 + C A UCEC 49464797 + 49464777 49464817 41 CCCTGTCTCCAGGACGGCCTCCTCTCCTACTTTGGGACGCC CCCTGTCTCCAGGACGGCCTCATCTCCTACTTTGGGACGCC < 41bp 1 0.299391732363754 1 0.255930602550507 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BAX ENSG00000087088 CDS Human protein_coding chr19:49464797 chr19:49464798 nonsynonymous SNV 0.922 1 22 hm5C_associated_SNPs_44881 0 0 1 0 1 BAX chr19:49464789 3'AG 49464789 Downstream 10bp
chr19 6362538 6362538 1 + T A UCEC 6362549 + 6362529 6362569 41 ATCCACATGTACATCAACAGCCCTGGTGAGCAGGGTCTTTC ATCCACATGAACATCAACAGCCCTGGTGAGCAGGGTCTTTC < 41bp 1 0.200587983821839 1 0.0302045345306396 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLPP ENSG00000125656;ENSG00000125656 exonic;splicing Human protein_coding chr19:6362549 chr19:6362538 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_44882 0 0 1 0 2 CLPP chr19:6362457 3'AG 6362457 Downstream 82bp
chr19 6362538 6362538 1 + T A UCEC 6362549 + 6362529 6362569 41 ATCCACATGTACATCAACAGCCCTGGTGAGCAGGGTCTTTC ATCCACATGAACATCAACAGCCCTGGTGAGCAGGGTCTTTC < 41bp 1 0.200587983821839 1 0.0302045345306396 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLPP ENSG00000125656;ENSG00000125656 exonic;splicing Human protein_coding chr19:6362549 chr19:6362538 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_44882 0 0 1 0 2 CLPP chr19:6362553 5'GT 6362553 Upstream 16bp
chr19 6362538 6362538 1 + T A UCEC 6362550 + 6362530 6362570 41 TCCACATGTACATCAACAGCCCTGGTGAGCAGGGTCTTTCC TCCACATGAACATCAACAGCCCTGGTGAGCAGGGTCTTTCC < 41bp 1 0.204076577969798 1 0.0814743340015411 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLPP ENSG00000125656;ENSG00000125656 exonic;splicing Human protein_coding chr19:6362550 chr19:6362538 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_44883 0 0 1 0 2 CLPP chr19:6362457 3'AG 6362457 Downstream 82bp
chr19 6362538 6362538 1 + T A UCEC 6362550 + 6362530 6362570 41 TCCACATGTACATCAACAGCCCTGGTGAGCAGGGTCTTTCC TCCACATGAACATCAACAGCCCTGGTGAGCAGGGTCTTTCC < 41bp 1 0.204076577969798 1 0.0814743340015411 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLPP ENSG00000125656;ENSG00000125656 exonic;splicing Human protein_coding chr19:6362550 chr19:6362538 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_44883 0 0 1 0 2 CLPP chr19:6362553 5'GT 6362553 Upstream 16bp
chr19 14561842 14561842 1 + C T UCEC 14561839 + 14561819 14561859 41 GAAGAGCTCGCTGCGGCCTCCTCCGCTGCCTTCAGCACCCG GAAGAGCTCGCTGCGGCCTCCTCTGCTGCCTTCAGCACCCG < 41bp 1 0.431453617025987 1 0.171069473028183 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14561839 chr19:14561842 synonymous SNV . 0 24 hm5C_associated_SNPs_44884 0 0 1 0 1 PKN1 chr19:14561921 5'GT 14561921 Upstream 80bp
chr11 63997004 63997004 1 + G T UCEC 63997000 + 63996980 63997020 41 GCACTACCTGAGTGGGGGACCCGAGGCCCACGAGTCTACAG GCACTACCTGAGTGGGGGACCCGATGCCCACGAGTCTACAG < 41bp 1 0.268399629986266 1 0.446901798248291 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997000 chr11:63997004 nonsynonymous SNV 0.978 2 25 hm5C_associated_SNPs_44885 0 0 0 0 2 NUDT22 chr11:63996950 3'AG 63996950 Downstream 55bp
chr11 63997004 63997004 1 + G T UCEC 63997000 + 63996980 63997020 41 GCACTACCTGAGTGGGGGACCCGAGGCCCACGAGTCTACAG GCACTACCTGAGTGGGGGACCCGATGCCCACGAGTCTACAG < 41bp 1 0.268399629986266 1 0.446901798248291 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997000 chr11:63997004 nonsynonymous SNV 0.978 2 25 hm5C_associated_SNPs_44885 0 0 0 0 2 NUDT22 chr11:63997043 5'GT 63997043 Upstream 40bp
chr10 17278332 17278332 1 + C G UCEC 17278316 + 17278296 17278336 41 CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTCAAAA CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTGAAAA < 41bp 1 0.290338024438767 1 0.67701667547226 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278316 chr10:17278332 stopgain 0.998 0 37 hm5C_associated_SNPs_44886 0 0 1 0 2 VIM chr10:17278293 3'AG 17278293 Downstream 40bp
chr10 17278332 17278332 1 + C G UCEC 17278316 + 17278296 17278336 41 CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTCAAAA CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTGAAAA < 41bp 1 0.290338024438767 1 0.67701667547226 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278316 chr10:17278332 stopgain 0.998 0 37 hm5C_associated_SNPs_44886 0 0 1 0 2 VIM chr10:17278378 5'GT 17278378 Upstream 47bp
chrX 2641355 2641355 1 + G A UCEC 2641365 + 2641345 2641385 41 TGTCTTGCAGGAAAAGGAGGCAGTGATGGTGGAGGCAGCCA TGTCTTGCAGAAAAAGGAGGCAGTGATGGTGGAGGCAGCCA < 41bp 1 0.298238341903801 1 0.504561424255371 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD99 ENSG00000002586 CDS Human protein_coding chrX:2641365 chrX:2641355 nonsynonymous SNV 0.034 1 11 hm5C_associated_SNPs_44889 0 0 1 0 1 CD99 chrX:2641355 3'AG 2641355 Downstream 1bp
chr7 91714879 91714879 1 + G C UCEC 91714864 + 91714844 91714884 41 GGTGCTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGG GGTGCTTTCTCTCACTGAGTCTCCCTATAGTGATGCAGAGG < 41bp 1 0.22162206269909 1 0.337579429149628 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714864 chr7:91714879 nonsynonymous SNV 0.903 0 36 hm5C_associated_SNPs_44890 0 0 1 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 71bp
chr7 91714879 91714879 1 + G C UCEC 91714867 + 91714847 91714887 41 GCTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGGACC GCTTTCTCTCACTGAGTCTCCCTATAGTGATGCAGAGGACC < 41bp 1 0.0191573367877879 1 0.0749336779117584 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714867 chr7:91714879 nonsynonymous SNV 0.903 0 33 hm5C_associated_SNPs_44891 0 0 1 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 71bp
chr7 91714879 91714879 1 + G C UCEC 91714868 + 91714848 91714888 41 CTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGGACCA CTTTCTCTCACTGAGTCTCCCTATAGTGATGCAGAGGACCA < 41bp 1 0.231247406185427 1 0.37359482049942 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714868 chr7:91714879 nonsynonymous SNV 0.903 0 32 hm5C_associated_SNPs_44892 0 0 1 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 71bp
chr7 91714879 91714879 1 + G C UCEC 91714891 + 91714871 91714911 41 TAGTGATGGAGAGGACCATTCTATTCAGCAGGTTTCAGAAC TAGTGATGCAGAGGACCATTCTATTCAGCAGGTTTCAGAAC < 41bp 1 0.161973199808012 1 0.169393837451935 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714891 chr7:91714879 nonsynonymous SNV 0.903 0 9 hm5C_associated_SNPs_44893 0 0 1 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 71bp
chr7 91714879 91714879 1 + G C UCEC 91714896 + 91714876 91714916 41 ATGGAGAGGACCATTCTATTCAGCAGGTTTCAGAACCTTGG ATGCAGAGGACCATTCTATTCAGCAGGTTTCAGAACCTTGG < 41bp 1 0.760626731589974 1 0.485896915197372 experiment 0.478746536820053 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714896 chr7:91714879 nonsynonymous SNV 0.903 0 4 hm5C_associated_SNPs_44894 0 0 1 0 1 AKAP9 chr7:91714809 3'AG 91714809 Downstream 71bp
chr3 123348376 123348376 1 + C T UCEC 123348379 + 123348359 123348399 41 GGCATCGTCGGAGATCTCATCGAATGCCTCGTCGTCGAAGT GGCATCGTCGGAGATCTTATCGAATGCCTCGTCGTCGAAGT < 41bp 1 0.649786175487478 1 0.415423452854156 experiment 0.700427649025045 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYLK ENSG00000065534 CDS Human protein_coding chr3:123348379 chr3:123348376 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_44895 0 0 0 0 1 MYLK chr3:123348341 3'AG 123348341 Downstream 36bp
chr6 43188277 43188277 1 + C T UCEC 43188295 + 43188275 43188315 41 CCCGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC CCTGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC < 41bp 1 0.54816267549335 1 0.350996315479279 experiment 0.903674649013301 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188295 chr6:43188277 synonymous SNV . 0 3 hm5C_associated_SNPs_44896 0 0 0 0 2 CUL9 chr6:43188197 3'AG 43188197 Downstream 81bp
chr6 43188277 43188277 1 + C T UCEC 43188295 + 43188275 43188315 41 CCCGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC CCTGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC < 41bp 1 0.54816267549335 1 0.350996315479279 experiment 0.903674649013301 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188295 chr6:43188277 synonymous SNV . 0 3 hm5C_associated_SNPs_44896 0 0 0 0 2 CUL9 chr6:43188337 5'GT 43188337 Upstream 61bp
chr10 75676163 75676163 1 + C A UCEC 75676179 + 75676159 75676199 41 GGACCCCTCGTCTGTTCCCTCCAAGGCCGCATGACTTTGAC GGACACCTCGTCTGTTCCCTCCAAGGCCGCATGACTTTGAC < 41bp 1 0.366514907261789 1 0.692973673343658 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLAU ENSG00000122861 CDS Human protein_coding chr10:75676179 chr10:75676163 nonsynonymous SNV 0.022 4 5 hm5C_associated_SNPs_44897 0 0 0 0 1 PLAU chr10:75676147 3'AG 75676147 Downstream 17bp
chr17 33328361 33328361 1 + G A UCEC 33328374 + 33328354 33328394 41 TTCCCTCGCTGCACCCGAATCCGAGATGATAAGGACTGGAA TTCCCTCACTGCACCCGAATCCGAGATGATAAGGACTGGAA < 41bp 1 0.416193240835341 1 0.760663151741028 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33328374 chr17:33328361 nonsynonymous SNV 0.997 4 8 hm5C_associated_SNPs_44898 0 0 1 0 2 LIG3 chr17:33328276 3'AG 33328276 Downstream 86bp
chr17 33328361 33328361 1 + G A UCEC 33328374 + 33328354 33328394 41 TTCCCTCGCTGCACCCGAATCCGAGATGATAAGGACTGGAA TTCCCTCACTGCACCCGAATCCGAGATGATAAGGACTGGAA < 41bp 1 0.416193240835341 1 0.760663151741028 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33328374 chr17:33328361 nonsynonymous SNV 0.997 4 8 hm5C_associated_SNPs_44898 0 0 1 0 2 LIG3 chr17:33328422 5'GT 33328422 Upstream 62bp
chr16 845834 845834 1 + C T UCEC 845820 + 845800 845840 41 TGCTCCTGGACATTCTTGCACCCAAGCTCCGCCCCGTGAGT TGCTCCTGGACATTCTTGCACCCAAGCTCCGCCCTGTGAGT < 41bp 1 0.253498322934129 1 0.0873498320579529 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845820 chr16:845834 synonymous SNV . 0 35 hm5C_associated_SNPs_44899 0 0 1 0 1 CHTF18 chr16:845834 5'GT 845834 Upstream 1bp
chr19 49593570 49593570 1 + C A UCEC 49593563 + 49593543 49593583 41 CCCAGGACCCTCGAGATGCCCCTCCTCCAACTCGTGCTGAA CCCAGGACCCTCGAGATGCCCCTCCTCAAACTCGTGCTGAA < 41bp 1 0.05887474043732 1 0.0760475397109985 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593563 chr19:49593570 nonsynonymous SNV 0.997 4 28 hm5C_associated_SNPs_44900 0 0 1 0 2 SNRNP70 chr19:49593548 3'AG 49593548 Downstream 23bp
chr19 49593570 49593570 1 + C A UCEC 49593563 + 49593543 49593583 41 CCCAGGACCCTCGAGATGCCCCTCCTCCAACTCGTGCTGAA CCCAGGACCCTCGAGATGCCCCTCCTCAAACTCGTGCTGAA < 41bp 1 0.05887474043732 1 0.0760475397109985 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593563 chr19:49593570 nonsynonymous SNV 0.997 4 28 hm5C_associated_SNPs_44900 0 0 1 0 2 SNRNP70 chr19:49593610 5'GT 49593610 Upstream 41bp
chr19 49593570 49593570 1 + C A UCEC 49593564 + 49593544 49593584 41 CCAGGACCCTCGAGATGCCCCTCCTCCAACTCGTGCTGAAA CCAGGACCCTCGAGATGCCCCTCCTCAAACTCGTGCTGAAA < 41bp 1 0.213338705253746 1 0.150329977273941 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593564 chr19:49593570 nonsynonymous SNV 0.997 4 27 hm5C_associated_SNPs_44901 0 0 1 0 2 SNRNP70 chr19:49593548 3'AG 49593548 Downstream 23bp
chr19 49593570 49593570 1 + C A UCEC 49593564 + 49593544 49593584 41 CCAGGACCCTCGAGATGCCCCTCCTCCAACTCGTGCTGAAA CCAGGACCCTCGAGATGCCCCTCCTCAAACTCGTGCTGAAA < 41bp 1 0.213338705253746 1 0.150329977273941 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593564 chr19:49593570 nonsynonymous SNV 0.997 4 27 hm5C_associated_SNPs_44901 0 0 1 0 2 SNRNP70 chr19:49593610 5'GT 49593610 Upstream 41bp
chr19 49593570 49593570 1 + C A UCEC 49593585 + 49593565 49593605 41 TCCTCCAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGA TCCTCAAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGA < 41bp 1 0.727843618112651 1 0.3848577439785 experiment 0.544312763774698 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593585 chr19:49593570 nonsynonymous SNV 0.997 4 6 hm5C_associated_SNPs_44902 0 0 1 0 2 SNRNP70 chr19:49593548 3'AG 49593548 Downstream 23bp
chr19 49593570 49593570 1 + C A UCEC 49593585 + 49593565 49593605 41 TCCTCCAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGA TCCTCAAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGA < 41bp 1 0.727843618112651 1 0.3848577439785 experiment 0.544312763774698 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593585 chr19:49593570 nonsynonymous SNV 0.997 4 6 hm5C_associated_SNPs_44902 0 0 1 0 2 SNRNP70 chr19:49593610 5'GT 49593610 Upstream 41bp
chr19 49593570 49593570 1 + C A UCEC 49593586 + 49593566 49593606 41 CCTCCAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGAG CCTCAAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGAG < 41bp 1 0.51353713161137 1 0.747860074043274 experiment 0.972925736777261 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593586 chr19:49593570 nonsynonymous SNV 0.997 4 5 hm5C_associated_SNPs_44903 0 0 1 0 2 SNRNP70 chr19:49593548 3'AG 49593548 Downstream 23bp
chr19 49593570 49593570 1 + C A UCEC 49593586 + 49593566 49593606 41 CCTCCAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGAG CCTCAAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGAG < 41bp 1 0.51353713161137 1 0.747860074043274 experiment 0.972925736777261 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593586 chr19:49593570 nonsynonymous SNV 0.997 4 5 hm5C_associated_SNPs_44903 0 0 1 0 2 SNRNP70 chr19:49593610 5'GT 49593610 Upstream 41bp
chr12 105553810 105553810 1 + C T UCEC 105553821 + 105553801 105553841 41 GATCACACACGAAATTCTGCCGAAGGCACAGAATATTTCAA GATCACACATGAAATTCTGCCGAAGGCACAGAATATTTCAA < 41bp 1 0.4100378628403 1 0.553618907928467 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105553821 chr12:105553810 stopgain 1.000 1 10 hm5C_associated_SNPs_44906 0 0 1 0 1 WASHC4 chr12:105553779 3'AG 105553779 Downstream 32bp
chr6 168363204 168363204 1 + G A UCEC 168363202 + 168363182 168363222 41 GCGAGGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG GCGAGGCAAGAGGAAGAGCGCCAGCGGCAGGAGGAGGAGCG < 41bp 1 0.171104938371182 1 0.470098286867142 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363202 chr6:168363204 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_44907 0 0 1 0 3 AFDN chr6:168363113 3'AG 168363113 Downstream 92bp
chr6 168363204 168363204 1 + G A UCEC 168363202 + 168363182 168363222 41 GCGAGGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG GCGAGGCAAGAGGAAGAGCGCCAGCGGCAGGAGGAGGAGCG < 41bp 1 0.171104938371182 1 0.470098286867142 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363202 chr6:168363204 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_44907 0 0 1 0 3 AFDN chr6:168363119 3'AG 168363119 Downstream 86bp
chr6 168363204 168363204 1 + G A UCEC 168363202 + 168363182 168363222 41 GCGAGGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG GCGAGGCAAGAGGAAGAGCGCCAGCGGCAGGAGGAGGAGCG < 41bp 1 0.171104938371182 1 0.470098286867142 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363202 chr6:168363204 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_44907 0 0 1 0 3 AFDN chr6:168363247 5'GT 168363247 Upstream 44bp
chr17 73738713 73738713 1 + C T UCEC 73738719 + 73738699 73738739 41 AGCTGGTGGACGTACGGGTGCCCCTCTTTATCCGGCCTGAG AGCTGGTGGACGTATGGGTGCCCCTCTTTATCCGGCCTGAG < 41bp 1 0.118237007846684 1 0.0295092463493347 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73738719 chr17:73738713 nonsynonymous SNV 0.920 4 15 hm5C_associated_SNPs_44908 1 0 0 0 1 ITGB4 chr17:73738663 3'AG 73738663 Downstream 51bp
chr16 1817172 1817172 1 + C T UCEC 1817164 + 1817144 1817184 41 CTCCAGATGGCCAGTGGGATCTGAGCAACTATCACCTAATG CTCCAGATGGCCAGTGGGATCTGAGCAATTATCACCTAATG < 41bp 1 0.506620464535932 1 0.324399948120117 experiment 0.986759070928136 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1817164 chr16:1817172 synonymous SNV . 0 29 hm5C_associated_SNPs_44909 0 0 0 0 1 MAPK8IP3 chr16:1817150 3'AG 1817150 Downstream 23bp
chr17 27049885 27049885 1 + C T UCEC 27049866 + 27049846 27049886 41 CAAGCACCAGATTAAACAGGCTGTGAAGAAGCTGTATGACA CAAGCACCAGATTAAACAGGCTGTGAAGAAGCTGTATGATA < 41bp 1 0.248931830552775 1 0.105336487293243 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL23A ENSG00000198242 CDS Human protein_coding chr17:27049866 chr17:27049885 synonymous SNV . 0 40 hm5C_associated_SNPs_44912 0 0 1 0 1 RPL23A chr17:27049917 5'GT 27049917 Upstream 33bp
chr17 27049885 27049885 1 + C T UCEC 27049896 + 27049876 27049916 41 GCTGTATGACATTGATGTGGCCAAGGTCAACACCCTGATTC GCTGTATGATATTGATGTGGCCAAGGTCAACACCCTGATTC < 41bp 1 0.453771408436168 1 0.415976285934448 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL23A ENSG00000198242 CDS Human protein_coding chr17:27049896 chr17:27049885 synonymous SNV . 0 10 hm5C_associated_SNPs_44913 0 0 1 0 1 RPL23A chr17:27049917 5'GT 27049917 Upstream 33bp
chr17 27049885 27049885 1 + C T UCEC 27049897 + 27049877 27049917 41 CTGTATGACATTGATGTGGCCAAGGTCAACACCCTGATTCG CTGTATGATATTGATGTGGCCAAGGTCAACACCCTGATTCG < 41bp 1 0.716755815654406 1 0.472933351993561 experiment 0.566488368691189 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL23A ENSG00000198242 CDS Human protein_coding chr17:27049897 chr17:27049885 synonymous SNV . 0 9 hm5C_associated_SNPs_44914 0 0 1 0 1 RPL23A chr17:27049917 5'GT 27049917 Upstream 33bp
chr3 10320677 10320677 1 + C T UCEC 10320688 + 10320668 10320708 41 GCTGCCTTGCGTGAGAACACCAGTCGCCTCTACAGTCTTTA GCTGCCTTGTGTGAGAACACCAGTCGCCTCTACAGTCTTTA < 41bp 1 0.18172604027565 1 0.102928280830383 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TATDN2 ENSG00000157014 CDS Human other chr3:10320688 chr3:10320677 nonsynonymous SNV 0.710 3 10 hm5C_associated_SNPs_44915 0 0 1 0 2 TATDN2 chr3:10320718 5'GT 10320718 Upstream 42bp
chr3 10320677 10320677 1 + C T UCEC 10320688 + 10320668 10320708 41 GCTGCCTTGCGTGAGAACACCAGTCGCCTCTACAGTCTTTA GCTGCCTTGTGTGAGAACACCAGTCGCCTCTACAGTCTTTA < 41bp 1 0.18172604027565 1 0.102928280830383 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TATDN2 ENSG00000157014 CDS Human protein_coding chr3:10320688 chr3:10320677 nonsynonymous SNV 0.710 3 10 hm5C_associated_SNPs_44915 0 0 1 0 2 TATDN2 chr3:10320747 5'GT 10320747 Upstream 71bp
chr3 138341056 138341056 1 + C A UCEC 138341068 + 138341048 138341088 41 TGGATGTTCAAATTAGTGGGCAAAGAAACATTCTATGTTGG TGGATGTTAAAATTAGTGGGCAAAGAAACATTCTATGTTGG < 41bp 1 0.132526369967977 1 0.240726262331009 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAIM ENSG00000158234 CDS Human protein_coding chr3:138341068 chr3:138341056 nonsynonymous SNV 0.990 4 9 hm5C_associated_SNPs_44916 0 0 1 0 1 FAIM chr3:138341030 3'AG 138341030 Downstream 27bp
chr20 35176483 35176483 1 + C T UCEC 35176493 + 35176473 35176513 41 AGCGAGGCCCCGGGGCCCATCAACTTCACCATGTTCCTCAC AGCGAGGCCCTGGGGCCCATCAACTTCACCATGTTCCTCAC < 41bp 1 0.569810318323718 1 0.821735680103302 experiment 0.860379363352563 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MYL9 ENSG00000101335 CDS Human protein_coding chr20:35176493 chr20:35176483 nonsynonymous SNV 0.988 2 11 hm5C_associated_SNPs_44917 0 0 0 0 1 MYL9 chr20:35176435 3'AG 35176435 Downstream 49bp
chr11 107966289 107966289 1 + T G UCEC 107966308 + 107966288 107966328 41 ATTTGGAGGTAACCACGTTTCAGCTCGCTGTATTGTTTGCA AGTTGGAGGTAACCACGTTTCAGCTCGCTGTATTGTTTGCA < 41bp 1 0.497609484628095 1 0.501153707504272 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL5 ENSG00000166266 CDS Human protein_coding chr11:107966308 chr11:107966289 nonsynonymous SNV 0.998 1 2 hm5C_associated_SNPs_44918 0 0 1 0 1 CUL5 chr11:107966257 3'AG 107966257 Downstream 33bp
chr1 145293188 145293188 1 + C G UCEC 145293174 + 145293154 145293194 41 ATCAGAGTCTGAGCTACTGGCAGTGCTTTCAGCTCTGAGTT ATCAGAGTCTGAGCTACTGGCAGTGCTTTCAGCTGTGAGTT < 41bp 1 0.12194227726268 1 0.109072744846344 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NBPF25P ENSG00000255168 CDS Human other chr1:145293174 chr1:145293188 nonsynonymous SNV . 0 35 hm5C_associated_SNPs_44919 0 0 0 0 2 NBPF25P chr1:145293114 3'AG 145293114 Downstream 75bp
chr1 145293188 145293188 1 + C G UCEC 145293174 + 145293154 145293194 41 ATCAGAGTCTGAGCTACTGGCAGTGCTTTCAGCTCTGAGTT ATCAGAGTCTGAGCTACTGGCAGTGCTTTCAGCTGTGAGTT < 41bp 1 0.12194227726268 1 0.109072744846344 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NBPF25P ENSG00000255168 CDS Human other chr1:145293174 chr1:145293188 nonsynonymous SNV . 0 35 hm5C_associated_SNPs_44919 0 0 0 0 2 NBPF25P chr1:145293272 5'GT 145293272 Upstream 85bp
chr20 39746905 39746905 1 + T C UCEC 39746895 + 39746875 39746915 41 GTAACCATCAGAGGGCACCACCAAAAACTTTTGAGAAGTCT GTAACCATCAGAGGGCACCACCAAAAACTTCTGAGAAGTCT < 41bp 1 0.217673650616405 1 0.168753415346146 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39746895 chr20:39746905 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_44920 0 0 0 0 2 TOP1 chr20:39746809 3'AG 39746809 Downstream 97bp
chr20 39746905 39746905 1 + T C UCEC 39746895 + 39746875 39746915 41 GTAACCATCAGAGGGCACCACCAAAAACTTTTGAGAAGTCT GTAACCATCAGAGGGCACCACCAAAAACTTCTGAGAAGTCT < 41bp 1 0.217673650616405 1 0.168753415346146 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39746895 chr20:39746905 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_44920 0 0 0 0 2 TOP1 chr20:39746936 5'GT 39746936 Upstream 32bp
chr16 2514075 2514075 1 + G T UCEC 2514057 + 2514037 2514077 41 CAGCGGTGGCGGAACAGCCACCAAGACCATGTCCTGTGGGG CAGCGGTGGCGGAACAGCCACCAAGACCATGTCCTGTGTGG < 41bp 1 0.248123549025655 1 0.298507153987885 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2514057 chr16:2514075 nonsynonymous SNV 0.001 2 39 hm5C_associated_SNPs_44921 0 0 0 0 1 C16orf59 chr16:2514040 3'AG 2514040 Downstream 36bp
chr3 51737776 51737776 1 + T C UCEC 51737759 + 51737739 51737779 41 GGAGCTGACACAATGAGTGACACGAGTTCTGTAAGCTTGGA GGAGCTGACACAATGAGTGACACGAGTTCTGTAAGCTCGGA < 41bp 1 0.786407456832204 1 0.386347323656082 experiment 0.427185086335592 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TEX264 ENSG00000164081 CDS Human protein_coding chr3:51737759 chr3:51737776 nonsynonymous SNV 0.991 0 38 hm5C_associated_SNPs_44922 0 0 1 0 1 TEX264 chr3:51737740 3'AG 51737740 Downstream 37bp
chr3 51737776 51737776 1 + T C UCEC 51737767 + 51737747 51737787 41 CACAATGAGTGACACGAGTTCTGTAAGCTTGGAAGTGAGCC CACAATGAGTGACACGAGTTCTGTAAGCTCGGAAGTGAGCC < 41bp 1 0.563998920008364 1 0.262880951166153 experiment 0.872002159983271 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TEX264 ENSG00000164081 CDS Human protein_coding chr3:51737767 chr3:51737776 nonsynonymous SNV 0.991 0 30 hm5C_associated_SNPs_44923 0 0 1 0 1 TEX264 chr3:51737740 3'AG 51737740 Downstream 37bp
chr2 214149312 214149312 1 + G A UCEC 214149300 + 214149280 214149320 41 GCAGCCGGGGACGCGAGGGACACGGCGGACGCGGTGGCGGC GCAGCCGGGGACGCGAGGGACACGGCGGACGCAGTGGCGGC < 41bp 1 0.738203869531713 1 0.496046632528305 experiment 0.523592260936574 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPAG16 ENSG00000144451 CDS Human protein_coding chr2:214149300 chr2:214149312 synonymous SNV . 0 33 hm5C_associated_SNPs_44924 0 0 1 0 1 SPAG16 chr2:214149343 5'GT 214149343 Upstream 32bp
chr21 45560184 45560184 1 + C T UCEC 45560204 + 45560184 45560224 41 CGTGTCCTGAAGGAGTTCCACCAGGCCGGGAAGCCCATCGG TGTGTCCTGAAGGAGTTCCACCAGGCCGGGAAGCCCATCGG < 41bp 1 0.651684747914252 1 0.329770624637604 experiment 0.696630504171496 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45560204 chr21:45560184 nonsynonymous SNV 0.028 4 1 hm5C_associated_SNPs_44925 0 0 1 0 2 C21orf33 chr21:45560132 3'AG 45560132 Downstream 53bp
chr21 45560184 45560184 1 + C T UCEC 45560204 + 45560184 45560224 41 CGTGTCCTGAAGGAGTTCCACCAGGCCGGGAAGCCCATCGG TGTGTCCTGAAGGAGTTCCACCAGGCCGGGAAGCCCATCGG < 41bp 1 0.651684747914252 1 0.329770624637604 experiment 0.696630504171496 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45560204 chr21:45560184 nonsynonymous SNV 0.028 4 1 hm5C_associated_SNPs_44925 0 0 1 0 2 C21orf33 chr21:45560224 5'GT 45560224 Upstream 41bp
chr19 19645937 19645937 1 + G T UCEC 19645936 + 19645916 19645956 41 CAGTGGGGCTGGTCTGTGCCCGGCACCTGCGGGTGTTTGTA CAGTGGGGCTGGTCTGTGCCCTGCACCTGCGGGTGTTTGTA < 41bp 1 0.719520439574625 1 0.445620656013489 experiment 0.560959120850751 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control YJEFN3 ENSG00000250067;ENSG00000258674 CDS Human other chr19:19645936 chr19:19645937 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_44926 0 0 1 1 1 YJEFN3 chr19:19645843 3'AG 19645843 Downstream 95bp
chr8 22054841 22054841 1 + A G UCEC 22054853 + 22054833 22054873 41 GAAGCCCGAGGTCATCACCTCCCAGTACAACAACATGCGCG GAAGCCCGGGGTCATCACCTCCCAGTACAACAACATGCGCG < 41bp 1 0.185306165884967 1 0.172325432300568 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22054853 chr8:22054841 nonsynonymous SNV 0.992 0 9 hm5C_associated_SNPs_44927 0 0 1 0 2 BMP1 chr8:22054753 3'AG 22054753 Downstream 89bp
chr8 22054841 22054841 1 + A G UCEC 22054853 + 22054833 22054873 41 GAAGCCCGAGGTCATCACCTCCCAGTACAACAACATGCGCG GAAGCCCGGGGTCATCACCTCCCAGTACAACAACATGCGCG < 41bp 1 0.185306165884967 1 0.172325432300568 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22054853 chr8:22054841 nonsynonymous SNV 0.992 0 9 hm5C_associated_SNPs_44927 0 0 1 0 2 BMP1 chr8:22054933 5'GT 22054933 Upstream 93bp
chr20 60708474 60708474 1 + G T UCEC 60708483 + 60708463 60708503 41 TGGGACCACCCGTCGCAACCCCACTTCCCACAGGGCCGGGA TGGGACCACCCTTCGCAACCCCACTTCCCACAGGGCCGGGA < 41bp 1 0.240895800875747 1 0.0258095562458038 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LSM14B ENSG00000149657 CDS Human protein_coding chr20:60708483 chr20:60708474 nonsynonymous SNV 0.849 3 12 hm5C_associated_SNPs_44928 0 0 1 0 1 LSM14B chr20:60708531 5'GT 60708531 Upstream 58bp
chr1 212970477 212970477 1 + G T UCEC 212970488 + 212970468 212970508 41 TCCTGCCATGCTTGGGTGTTCATCCAGTTCAAGGACTTCCA TCCTGCCATTCTTGGGTGTTCATCCAGTTCAAGGACTTCCA < 41bp 1 0.250856236422657 1 0.0416581630706787 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TATDN3 ENSG00000203705 CDS Human protein_coding chr1:212970488 chr1:212970477 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_44930 0 0 1 0 2 TATDN3 chr1:212970454 3'AG 212970454 Downstream 24bp
chr1 212970477 212970477 1 + G T UCEC 212970488 + 212970468 212970508 41 TCCTGCCATGCTTGGGTGTTCATCCAGTTCAAGGACTTCCA TCCTGCCATTCTTGGGTGTTCATCCAGTTCAAGGACTTCCA < 41bp 1 0.250856236422657 1 0.0416581630706787 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TATDN3 ENSG00000203705 CDS Human protein_coding chr1:212970488 chr1:212970477 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_44930 0 0 1 0 2 TATDN3 chr1:212970538 5'GT 212970538 Upstream 62bp
chr1 161751785 161751785 1 + T C UCEC 161751776 + 161751756 161751796 41 GACATTTGGGACATCAACAACCAAATCTGTACAGGTAATTA GACATTTGGGACATCAACAACCAAATCTGCACAGGTAATTA < 41bp 1 0.190321213998021 1 0.140946269035339 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161751776 chr1:161751785 synonymous SNV . 0 30 hm5C_associated_SNPs_44939 0 0 1 0 2 ATF6 chr1:161751702 3'AG 161751702 Downstream 84bp
chr1 161751785 161751785 1 + T C UCEC 161751776 + 161751756 161751796 41 GACATTTGGGACATCAACAACCAAATCTGTACAGGTAATTA GACATTTGGGACATCAACAACCAAATCTGCACAGGTAATTA < 41bp 1 0.190321213998021 1 0.140946269035339 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161751776 chr1:161751785 synonymous SNV . 0 30 hm5C_associated_SNPs_44939 0 0 1 0 2 ATF6 chr1:161751789 5'GT 161751789 Upstream 5bp
chr11 70260720 70260720 1 + G A UCEC 70260737 + 70260717 70260757 41 TTCGGAGGCAAGTTTGGTGTCCAGATGGACAGAGTTGATCA TTCAGAGGCAAGTTTGGTGTCCAGATGGACAGAGTTGATCA < 41bp 1 0.712618745311296 1 0.359563887119293 experiment 0.574762509377409 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70260737 chr11:70260720 nonsynonymous SNV 0.843 4 4 hm5C_associated_SNPs_44941 0 0 1 0 2 CTTN chr11:70260648 3'AG 70260648 Downstream 73bp
chr11 70260720 70260720 1 + G A UCEC 70260737 + 70260717 70260757 41 TTCGGAGGCAAGTTTGGTGTCCAGATGGACAGAGTTGATCA TTCAGAGGCAAGTTTGGTGTCCAGATGGACAGAGTTGATCA < 41bp 1 0.712618745311296 1 0.359563887119293 experiment 0.574762509377409 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70260737 chr11:70260720 nonsynonymous SNV 0.843 4 4 hm5C_associated_SNPs_44941 0 0 1 0 2 CTTN chr11:70260758 5'GT 70260758 Upstream 39bp
chr14 60592509 60592509 1 + T C UCEC 60592489 + 60592469 60592509 41 TGATGAAAAGTGGAAGGAAGCAATTTTACAAGAAAAGCCAT TGATGAAAAGTGGAAGGAAGCAATTTTACAAGAAAAGCCAC < 41bp 1 0.313192264584483 1 0.257998615503311 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60592489 chr14:60592509 nonsynonymous SNV 0.997 2 41 hm5C_associated_SNPs_44942 0 0 1 2 1 PCNX4 chr14:60592541 5'GT 60592541 Upstream 33bp
chr16 1397797 1397797 1 + G A UCEC 1397801 + 1397781 1397821 41 AGGTGCTGCACGCCGCGGACCTGCTCCCCCTGGACGCCAAC AGGTGCTGCACGCCGCAGACCTGCTCCCCCTGGACGCCAAC < 41bp 1 0.34802414253949 1 0.133115977048874 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1397801 chr16:1397797 synonymous SNV . 0 17 hm5C_associated_SNPs_44943 0 0 0 0 2 BAIAP3 chr16:1397702 3'AG 1397702 Downstream 96bp
chr16 1397797 1397797 1 + G A UCEC 1397801 + 1397781 1397821 41 AGGTGCTGCACGCCGCGGACCTGCTCCCCCTGGACGCCAAC AGGTGCTGCACGCCGCAGACCTGCTCCCCCTGGACGCCAAC < 41bp 1 0.34802414253949 1 0.133115977048874 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1397801 chr16:1397797 synonymous SNV . 0 17 hm5C_associated_SNPs_44943 0 0 0 0 2 BAIAP3 chr16:1397822 5'GT 1397822 Upstream 26bp
chr1 110171381 110171381 1 + C T UCEC 110171392 + 110171372 110171412 41 CATGCACCGCGTGCACTCCCCCAACGTGCGCTGGCTGGTGC CATGCACCGTGTGCACTCCCCCAACGTGCGCTGGCTGGTGC < 41bp 1 0.222990397793656 1 0.272607207298279 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110171392 chr1:110171381 synonymous SNV . 0 10 hm5C_associated_SNPs_44944 0 0 0 0 1 AMPD2 chr1:110171428 5'GT 110171428 Upstream 48bp
chr8 26223917 26223917 1 + T C UCEC 26223916 + 26223896 26223936 41 TGAATGTTGTTGGAATGGATCTGACAGGTAATTAAGTCAAA TGAATGTTGTTGGAATGGATCCGACAGGTAATTAAGTCAAA < 41bp 1 0.0775516702545646 1 0.159130722284317 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223916 chr8:26223917 synonymous SNV . 0 22 hm5C_associated_SNPs_44945 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 87bp
chr8 26223917 26223917 1 + T C UCEC 26223916 + 26223896 26223936 41 TGAATGTTGTTGGAATGGATCTGACAGGTAATTAAGTCAAA TGAATGTTGTTGGAATGGATCCGACAGGTAATTAAGTCAAA < 41bp 1 0.0775516702545646 1 0.159130722284317 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223916 chr8:26223917 synonymous SNV . 0 22 hm5C_associated_SNPs_44945 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 6bp
chr8 26223917 26223917 1 + T C UCEC 26223920 + 26223900 26223940 41 TGTTGTTGGAATGGATCTGACAGGTAATTAAGTCAAACCTC TGTTGTTGGAATGGATCCGACAGGTAATTAAGTCAAACCTC < 41bp 1 0.377537934772915 1 0.630474090576172 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223920 chr8:26223917 synonymous SNV . 0 18 hm5C_associated_SNPs_44946 0 0 1 0 2 PPP2R2A chr8:26223831 3'AG 26223831 Downstream 87bp
chr8 26223917 26223917 1 + T C UCEC 26223920 + 26223900 26223940 41 TGTTGTTGGAATGGATCTGACAGGTAATTAAGTCAAACCTC TGTTGTTGGAATGGATCCGACAGGTAATTAAGTCAAACCTC < 41bp 1 0.377537934772915 1 0.630474090576172 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223920 chr8:26223917 synonymous SNV . 0 18 hm5C_associated_SNPs_44946 0 0 1 0 2 PPP2R2A chr8:26223922 5'GT 26223922 Upstream 6bp
chr2 182784138 182784138 1 + C T UCEC 182784123 + 182784103 182784143 41 GCCTGCTGGGCCTGGAGGAGCAGCTTCGTGCTGTGCGCATG GCCTGCTGGGCCTGGAGGAGCAGCTTCGTGCTGTGTGCATG < 41bp 1 0.740723480341158 1 0.095967173576355 experiment 0.518553039317684 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182784123 chr2:182784138 nonsynonymous SNV 0.000 2 36 hm5C_associated_SNPs_44951 0 0 1 0 1 SSFA2 chr2:182784173 5'GT 182784173 Upstream 36bp
chr11 68204381 68204381 1 + G A UCEC 68204395 + 68204375 68204415 41 AGTTCCGGTGTGCGAGCGGCCAGTGTGTCCTCATCAAACAG AGTTCCAGTGTGCGAGCGGCCAGTGTGTCCTCATCAAACAG < 41bp 1 0.41707336995998 1 0.438703924417496 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204395 chr11:68204381 nonsynonymous SNV 0.970 2 7 hm5C_associated_SNPs_44953 0 0 1 0 2 LRP5 chr11:68204357 3'AG 68204357 Downstream 25bp
chr11 68204381 68204381 1 + G A UCEC 68204395 + 68204375 68204415 41 AGTTCCGGTGTGCGAGCGGCCAGTGTGTCCTCATCAAACAG AGTTCCAGTGTGCGAGCGGCCAGTGTGTCCTCATCAAACAG < 41bp 1 0.41707336995998 1 0.438703924417496 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204395 chr11:68204381 nonsynonymous SNV 0.970 2 7 hm5C_associated_SNPs_44953 0 0 1 0 2 LRP5 chr11:68204467 5'GT 68204467 Upstream 87bp
chr8 27288495 27288495 1 + G A UCEC 27288507 + 27288487 27288527 41 CCGGCTTCGCCAACATCGACCAGGAGACCTACCGCTGTGAA CCGGCTTCACCAACATCGACCAGGAGACCTACCGCTGTGAA < 41bp 1 0.665369767891438 1 0.964138388633728 experiment 0.669260464217125 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTK2B ENSG00000120899 CDS Human protein_coding chr8:27288507 chr8:27288495 nonsynonymous SNV 0.993 1 9 hm5C_associated_SNPs_44954 0 0 1 0 1 PTK2B chr8:27288533 5'GT 27288533 Upstream 39bp
chr16 12618645 12618645 1 + G C UCEC 12618659 + 12618639 12618679 41 CCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC CCCCGACTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC < 41bp 1 0.146959136230064 1 0.414547383785248 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12618659 chr16:12618645 nonsynonymous SNV 0.799 1 7 hm5C_associated_SNPs_44955 0 0 0 0 2 SNX29 chr16:12618559 3'AG 12618559 Downstream 87bp
chr16 12618645 12618645 1 + G C UCEC 12618659 + 12618639 12618679 41 CCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC CCCCGACTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC < 41bp 1 0.146959136230064 1 0.414547383785248 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12618659 chr16:12618645 nonsynonymous SNV 0.799 1 7 hm5C_associated_SNPs_44955 0 0 0 0 2 SNX29 chr16:12618698 5'GT 12618698 Upstream 54bp
chr6 133783601 133783601 1 + G T UCEC 133783602 + 133783582 133783622 41 CAGACAGGACAGCCCTACAGCTTGCCCACTTACGGTATTTC CAGACAGGACAGCCCTACATCTTGCCCACTTACGGTATTTC < 41bp 1 0.107485194197356 1 0.049150139093399 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133783602 chr6:133783601 nonsynonymous SNV 1.000 5 20 hm5C_associated_SNPs_44956 0 0 0 0 1 EYA4 chr6:133783615 5'GT 133783615 Upstream 15bp
chr1 10328300 10328300 1 + G T UCEC 10328306 + 10328286 10328326 41 AAACACGATAATGAGACCAACCTTTCCACTGAGAAGGTAGG AAACACGATAATGATACCAACCTTTCCACTGAGAAGGTAGG < 41bp 1 0.00268531252647476 1 0.0418626070022583 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10328306 chr1:10328300 nonsynonymous SNV 0.925 2 15 hm5C_associated_SNPs_44957 0 0 1 0 2 KIF1B chr1:10328210 3'AG 10328210 Downstream 91bp
chr1 10328300 10328300 1 + G T UCEC 10328306 + 10328286 10328326 41 AAACACGATAATGAGACCAACCTTTCCACTGAGAAGGTAGG AAACACGATAATGATACCAACCTTTCCACTGAGAAGGTAGG < 41bp 1 0.00268531252647476 1 0.0418626070022583 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10328306 chr1:10328300 nonsynonymous SNV 0.925 2 15 hm5C_associated_SNPs_44957 0 0 1 0 2 KIF1B chr1:10328321 5'GT 10328321 Upstream 22bp
chr1 86048107 86048107 1 + A T UCEC 86048095 + 86048075 86048115 41 GTCTTCCCTCTTATATGTCTCTAGTTTTTGGAATGGAGCCT GTCTTCCCTCTTATATGTCTCTAGTTTTTGGATTGGAGCCT < 41bp 1 0.257443229183908 1 0.319637537002563 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CYR61 ENSG00000142871 CDS Human protein_coding chr1:86048095 chr1:86048107 nonsynonymous SNV 0.962 0 33 hm5C_associated_SNPs_44958 0 0 1 0 1 CYR61 chr1:86048099 3'AG 86048099 Downstream 9bp
chr12 110474085 110474085 1 + C T UCEC 110474069 + 110474049 110474089 41 ACATTTGTCTTTGCCAGGAACTTTCAGGACCAGCTTCGAAT ACATTTGTCTTTGCCAGGAACTTTCAGGACCAGCTTTGAAT < 41bp 1 0.0313281594499055 1 0.0497825741767883 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110474069 chr12:110474085 nonsynonymous SNV 0.995 1 37 hm5C_associated_SNPs_44959 0 0 1 0 2 ANKRD13A chr12:110474066 3'AG 110474066 Downstream 20bp
chr12 110474085 110474085 1 + C T UCEC 110474069 + 110474049 110474089 41 ACATTTGTCTTTGCCAGGAACTTTCAGGACCAGCTTCGAAT ACATTTGTCTTTGCCAGGAACTTTCAGGACCAGCTTTGAAT < 41bp 1 0.0313281594499055 1 0.0497825741767883 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110474069 chr12:110474085 nonsynonymous SNV 0.995 1 37 hm5C_associated_SNPs_44959 0 0 1 0 2 ANKRD13A chr12:110474133 5'GT 110474133 Upstream 49bp
chr3 47361148 47361148 1 + G A UCEC 47361152 + 47361132 47361172 41 TTTGCCCACAGATTGGGGACCACAAATTCAGTGCCCACCGG TTTGCCCACAGATTGGAGACCACAAATTCAGTGCCCACCGG < 41bp 1 0.58228118416686 1 0.1956847012043 experiment 0.83543763166628 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47361152 chr3:47361148 synonymous SNV . 0 17 hm5C_associated_SNPs_44961 0 0 1 0 1 KLHL18 chr3:47361143 3'AG 47361143 Downstream 6bp
chr5 132400724 132400724 1 + A C UCEC 132400719 + 132400699 132400739 41 TCGTTCAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC TCGTTCAATTGGAGCAGCAGCTAAACGCCAGGTAAAGTTTC < 41bp 1 0.427401082611419 1 0.288387417793274 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132400719 chr5:132400724 nonsynonymous SNV 0.999 2 26 hm5C_associated_SNPs_44962 0 0 1 0 2 HSPA4 chr5:132400672 3'AG 132400672 Downstream 53bp
chr5 132400724 132400724 1 + A C UCEC 132400719 + 132400699 132400739 41 TCGTTCAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC TCGTTCAATTGGAGCAGCAGCTAAACGCCAGGTAAAGTTTC < 41bp 1 0.427401082611419 1 0.288387417793274 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132400719 chr5:132400724 nonsynonymous SNV 0.999 2 26 hm5C_associated_SNPs_44962 0 0 1 0 2 HSPA4 chr5:132400729 5'GT 132400729 Upstream 6bp
chr14 21462714 21462714 1 + C T UCEC 21462722 + 21462702 21462742 41 GTGGTTCAGAATCTGGGGAGCCTTATATTCCAGGTGTCTTT GTGGTTCAGAATTTGGGGAGCCTTATATTCCAGGTGTCTTT < 41bp 1 0.0727427132485525 1 0.0158212780952454 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL17 ENSG00000165792 CDS Human protein_coding chr14:21462722 chr14:21462714 nonsynonymous SNV 0.786 2 13 hm5C_associated_SNPs_44963 0 0 1 0 1 METTL17 chr14:21462702 3'AG 21462702 Downstream 13bp
chr6 47580230 47580230 1 + A G UCEC 47580216 + 47580196 47580236 41 ACTTTGTTTTTAGGAAAGAACTGGAAAAACTGCGAAAAGAT ACTTTGTTTTTAGGAAAGAACTGGAAAAACTGCGGAAAGAT < 41bp 1 0.686353175742567 1 0.412574708461761 experiment 0.627293648514866 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47580216 chr6:47580230 synonymous SNV . 0 35 hm5C_associated_SNPs_44965 0 0 1 0 2 CD2AP chr6:47580209 3'AG 47580209 Downstream 22bp
chr6 47580230 47580230 1 + A G UCEC 47580216 + 47580196 47580236 41 ACTTTGTTTTTAGGAAAGAACTGGAAAAACTGCGAAAAGAT ACTTTGTTTTTAGGAAAGAACTGGAAAAACTGCGGAAAGAT < 41bp 1 0.686353175742567 1 0.412574708461761 experiment 0.627293648514866 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47580216 chr6:47580230 synonymous SNV . 0 35 hm5C_associated_SNPs_44965 0 0 1 0 2 CD2AP chr6:47580272 5'GT 47580272 Upstream 43bp
chr5 167943842 167943842 1 + A C UCEC 167943826 + 167943806 167943846 41 TGCTGCTCAGACATCCGTTGCGTATGGCTGCATCAAATATG TGCTGCTCAGACATCCGTTGCGTATGGCTGCATCAACTATG < 41bp 1 0.183129292660315 1 0.033019095659256 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RARS ENSG00000113643 CDS Human protein_coding chr5:167943826 chr5:167943842 nonsynonymous SNV 0.995 4 37 hm5C_associated_SNPs_44967 0 0 1 0 1 RARS chr5:167943783 3'AG 167943783 Downstream 60bp
chr10 102112203 102112203 1 + C T UCEC 102112188 + 102112168 102112208 41 CTCATCGTCTGTGGAGCCACCGCTCTTACAAAGCTCGGCTG CTCATCGTCTGTGGAGCCACCGCTCTTACAAAGCTTGGCTG < 41bp 1 0.326734287319093 1 0.573358297348022 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCD ENSG00000099194 CDS Human protein_coding chr10:102112188 chr10:102112203 nonsynonymous SNV 0.037 3 36 hm5C_associated_SNPs_44968 0 0 1 0 2 SCD chr10:102112123 3'AG 102112123 Downstream 81bp
chr10 102112203 102112203 1 + C T UCEC 102112188 + 102112168 102112208 41 CTCATCGTCTGTGGAGCCACCGCTCTTACAAAGCTCGGCTG CTCATCGTCTGTGGAGCCACCGCTCTTACAAAGCTTGGCTG < 41bp 1 0.326734287319093 1 0.573358297348022 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCD ENSG00000099194 CDS Human protein_coding chr10:102112188 chr10:102112203 nonsynonymous SNV 0.037 3 36 hm5C_associated_SNPs_44968 0 0 1 0 2 SCD chr10:102112253 5'GT 102112253 Upstream 51bp
chr22 26880025 26880025 1 + T C UCEC 26880006 + 26879986 26880026 41 AGAGAGGCGGCGCCCCGGGGCCCCGAGGCGGAGTTCGAGTC AGAGAGGCGGCGCCCCGGGGCCCCGAGGCGGAGTTCGAGCC < 41bp 1 0.557833368194331 1 0.180821627378464 experiment 0.884333263611338 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRRD ENSG00000100104 CDS Human protein_coding chr22:26880006 chr22:26880025 nonsynonymous SNV 0.668 0 40 hm5C_associated_SNPs_44969 0 0 1 0 2 SRRD chr22:26879971 3'AG 26879971 Downstream 55bp
chr22 26880025 26880025 1 + T C UCEC 26880006 + 26879986 26880026 41 AGAGAGGCGGCGCCCCGGGGCCCCGAGGCGGAGTTCGAGTC AGAGAGGCGGCGCCCCGGGGCCCCGAGGCGGAGTTCGAGCC < 41bp 1 0.557833368194331 1 0.180821627378464 experiment 0.884333263611338 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRRD ENSG00000100104 CDS Human protein_coding chr22:26880006 chr22:26880025 nonsynonymous SNV 0.668 0 40 hm5C_associated_SNPs_44969 0 0 1 0 2 SRRD chr22:26880065 5'GT 26880065 Upstream 41bp
chr4 148796254 148796254 1 + G T UCEC 148796249 + 148796229 148796269 41 AGACAGAATCCCAAGGACCACAAACGAGCAAGTCAGTTTAC AGACAGAATCCCAAGGACCACAAACTAGCAAGTCAGTTTAC < 41bp 1 0.240555320843519 1 0.303517162799835 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP10 ENSG00000071205 CDS Human protein_coding chr4:148796249 chr4:148796254 nonsynonymous SNV 0.997 2 26 hm5C_associated_SNPs_44970 0 0 1 0 2 ARHGAP10 chr4:148796172 3'AG 148796172 Downstream 83bp
chr4 148796254 148796254 1 + G T UCEC 148796249 + 148796229 148796269 41 AGACAGAATCCCAAGGACCACAAACGAGCAAGTCAGTTTAC AGACAGAATCCCAAGGACCACAAACTAGCAAGTCAGTTTAC < 41bp 1 0.240555320843519 1 0.303517162799835 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP10 ENSG00000071205 CDS Human protein_coding chr4:148796249 chr4:148796254 nonsynonymous SNV 0.997 2 26 hm5C_associated_SNPs_44970 0 0 1 0 2 ARHGAP10 chr4:148796301 5'GT 148796301 Upstream 48bp
chr13 103299677 103299677 1 + G A UCEC 103299672 + 103299652 103299692 41 GAACAAAAGACAGATGGGTTCAGGCGATGCCTATCCACATC GAACAAAAGACAGATGGGTTCAGGCAATGCCTATCCACATC < 41bp 1 0.623086651559163 1 0.517963707447052 experiment 0.753826696881675 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPP2 ENSG00000134900 CDS Human protein_coding chr13:103299672 chr13:103299677 nonsynonymous SNV 0.993 4 26 hm5C_associated_SNPs_44971 0 0 0 0 1 TPP2 chr13:103299694 5'GT 103299694 Upstream 18bp
chr15 77224770 77224770 1 + G T UCEC 77224764 + 77224744 77224784 41 CAAAAAAGACTGCAGGCGATCATAAAGAAAATCGACTTGGA CAAAAAAGACTGCAGGCGATCATAAATAAAATCGACTTGGA < 41bp 1 0.618046960830372 1 0.252286672592163 experiment 0.763906078339256 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RCN2 ENSG00000117906 CDS Human protein_coding chr15:77224764 chr15:77224770 nonsynonymous SNV 0.998 1 27 hm5C_associated_SNPs_44972 0 0 1 0 2 RCN2 chr15:77224702 3'AG 77224702 Downstream 69bp
chr15 77224770 77224770 1 + G T UCEC 77224764 + 77224744 77224784 41 CAAAAAAGACTGCAGGCGATCATAAAGAAAATCGACTTGGA CAAAAAAGACTGCAGGCGATCATAAATAAAATCGACTTGGA < 41bp 1 0.618046960830372 1 0.252286672592163 experiment 0.763906078339256 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RCN2 ENSG00000117906 CDS Human protein_coding chr15:77224764 chr15:77224770 nonsynonymous SNV 0.998 1 27 hm5C_associated_SNPs_44972 0 0 1 0 2 RCN2 chr15:77224807 5'GT 77224807 Upstream 38bp
chr1 9416618 9416618 1 + G A UCEC 9416605 + 9416585 9416625 41 TAGTGAGTGCCGTCTGGGGCCACTGTGAGATCCGAATGCGC TAGTGAGTGCCGTCTGGGGCCACTGTGAGATCCAAATGCGC < 41bp 1 0.209712270214966 1 0.134735524654388 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SPSB1 ENSG00000171621 CDS Human protein_coding chr1:9416605 chr1:9416618 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_44975 0 0 1 0 1 SPSB1 chr1:9416644 5'GT 9416644 Upstream 27bp
chr6 160494418 160494418 1 + A G UCEC 160494408 + 160494388 160494428 41 TTCGTGTGCAGGCCTGAGGCCAGGCCAACCAATAGGCCCAT TTCGTGTGCAGGCCTGAGGCCAGGCCAACCGATAGGCCCAT < 41bp 1 0.322356472869142 1 0.850769996643066 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160494408 chr6:160494418 nonsynonymous SNV 0.701 0 31 hm5C_associated_SNPs_44976 0 0 1 0 1 IGF2R chr6:160494501 5'GT 160494501 Upstream 84bp
chr4 87968660 87968660 1 + C T UCEC 87968645 + 87968625 87968665 41 AATCCCCTGAACTGAAACCACTGCCGGAGGACTATCGACAG AATCCCCTGAACTGAAACCACTGCCGGAGGACTATTGACAG < 41bp 1 0.358364369154841 1 0.354528784751892 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AFF1 ENSG00000172493 CDS Human protein_coding chr4:87968645 chr4:87968660 stopgain 0.118 0 36 hm5C_associated_SNPs_44977 0 0 1 0 1 AFF1 chr4:87968746 5'GT 87968746 Upstream 87bp
chr6 13616699 13616699 1 + G T UCEC 13616704 + 13616684 13616724 41 CATTCCAAAAGAAAAGAAAACTCCTTCCAGACACTATTTTG CATTCCAAAAGAAAATAAAACTCCTTCCAGACACTATTTTG < 41bp 1 0.343524840625492 1 0.241240590810776 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOL7 ENSG00000225921 CDS Human protein_coding chr6:13616704 chr6:13616699 nonsynonymous SNV 0.996 4 16 hm5C_associated_SNPs_44978 0 0 1 0 2 NOL7 chr6:13616695 3'AG 13616695 Downstream 5bp
chr6 13616699 13616699 1 + G T UCEC 13616704 + 13616684 13616724 41 CATTCCAAAAGAAAAGAAAACTCCTTCCAGACACTATTTTG CATTCCAAAAGAAAATAAAACTCCTTCCAGACACTATTTTG < 41bp 1 0.343524840625492 1 0.241240590810776 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOL7 ENSG00000225921 CDS Human protein_coding chr6:13616704 chr6:13616699 nonsynonymous SNV 0.996 4 16 hm5C_associated_SNPs_44978 0 0 1 0 2 NOL7 chr6:13616753 5'GT 13616753 Upstream 55bp
chr16 56501900 56501900 1 + T C UCEC 56501910 + 56501890 56501930 41 TTGAAGAAAGTTCTGAAATTCTCCTGAAGGAGTTTCTTAAG TTGAAGAAAGCTCTGAAATTCTCCTGAAGGAGTTTCTTAAG < 41bp 1 0.576673850569989 1 0.917631506919861 experiment 0.846652298860023 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGFOD1 ENSG00000087263 CDS Human protein_coding chr16:56501910 chr16:56501900 synonymous SNV . 0 11 hm5C_associated_SNPs_44979 0 0 1 0 2 OGFOD1 chr16:56501817 3'AG 56501817 Downstream 84bp
chr16 56501900 56501900 1 + T C UCEC 56501910 + 56501890 56501930 41 TTGAAGAAAGTTCTGAAATTCTCCTGAAGGAGTTTCTTAAG TTGAAGAAAGCTCTGAAATTCTCCTGAAGGAGTTTCTTAAG < 41bp 1 0.576673850569989 1 0.917631506919861 experiment 0.846652298860023 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGFOD1 ENSG00000087263 CDS Human protein_coding chr16:56501910 chr16:56501900 synonymous SNV . 0 11 hm5C_associated_SNPs_44979 0 0 1 0 2 OGFOD1 chr16:56501930 5'GT 56501930 Upstream 31bp
chr20 39741481 39741481 1 + G T UCEC 39741461 + 39741441 39741481 41 AATACGAGACTGCTCGGCGGCTGAAAAAATGTGTGGACAAG AATACGAGACTGCTCGGCGGCTGAAAAAATGTGTGGACAAT < 41bp 1 0.686787831518115 1 0.460848480463028 experiment 0.626424336963771 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39741461 chr20:39741481 nonsynonymous SNV 0.999 1 41 hm5C_associated_SNPs_44981 0 0 1 0 1 TOP1 chr20:39741565 5'GT 39741565 Upstream 85bp
chr11 65827418 65827418 1 + G A UCEC 65827410 + 65827390 65827430 41 CAAACGGGGCATTGAGAAGCCCCCCTTCGAGCTGCCAGACT CAAACGGGGCATTGAGAAGCCCCCCTTCAAGCTGCCAGACT < 41bp 1 0.170132514294629 1 0.0500862002372742 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827410 chr11:65827418 nonsynonymous SNV 0.992 2 29 hm5C_associated_SNPs_44982 0 0 1 0 1 SF3B2 chr11:65827480 5'GT 65827480 Upstream 63bp
chr5 54635878 54635878 1 + A C UCEC 54635889 + 54635869 54635909 41 CAGCGTGTAATATTTACCAGCCCAATTAAGGCTCTGAGTAA CAGCGTGTACTATTTACCAGCCCAATTAAGGCTCTGAGTAA < 41bp 1 0.376680492465229 1 0.351960837841034 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54635889 chr5:54635878 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_44983 0 0 1 0 1 SKIV2L2 chr5:54635838 3'AG 54635838 Downstream 41bp
chr1 65871742 65871742 1 + G A UCEC 65871740 + 65871720 65871760 41 CCCCACTCCTCTCCCCAGAACCGACCCAACTACAACGTGAG CCCCACTCCTCTCCCCAGAACCAACCCAACTACAACGTGAG < 41bp 1 0.0319892245938882 1 0.10583359003067 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65871740 chr1:65871742 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_44984 0 0 0 0 1 DNAJC6 chr1:65871816 5'GT 65871816 Upstream 75bp
chr7 116199070 116199070 1 + T C UCEC 116199065 + 116199045 116199085 41 TTTGACGGCATTTGGAAGGCCAGCTTCACCACCTTCACTGT TTTGACGGCATTTGGAAGGCCAGCTCCACCACCTTCACTGT < 41bp 1 0.3145329439521 1 0.285999715328217 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAV1 ENSG00000105974 CDS Human protein_coding chr7:116199065 chr7:116199070 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_44985 0 0 0 3 1 CAV1 chr7:116199000 3'AG 116199000 Downstream 71bp
chr3 179462921 179462921 1 + G T UCEC 179462925 + 179462905 179462945 41 GCCAAGATACCATTTAGTGCCTGCCTTCAGGCCTTCTCTGA GCCAAGATACCATTTATTGCCTGCCTTCAGGCCTTCTCTGA < 41bp 1 0.472504255101443 1 0.0346703231334686 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP13 ENSG00000058056 CDS Human protein_coding chr3:179462925 chr3:179462921 nonsynonymous SNV 0.824 1 17 hm5C_associated_SNPs_44986 0 0 1 0 2 USP13 chr3:179462831 3'AG 179462831 Downstream 91bp
chr3 179462921 179462921 1 + G T UCEC 179462925 + 179462905 179462945 41 GCCAAGATACCATTTAGTGCCTGCCTTCAGGCCTTCTCTGA GCCAAGATACCATTTATTGCCTGCCTTCAGGCCTTCTCTGA < 41bp 1 0.472504255101443 1 0.0346703231334686 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP13 ENSG00000058056 CDS Human protein_coding chr3:179462925 chr3:179462921 nonsynonymous SNV 0.824 1 17 hm5C_associated_SNPs_44986 0 0 1 0 2 USP13 chr3:179463005 5'GT 179463005 Upstream 85bp
chr20 39721205 39721205 1 + G T UCEC 39721195 + 39721175 39721215 41 ATTTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT ATTTGCCCCACCATATGAGCCTCTTCCAGATAATGTCAAGT < 41bp 1 0.0719054169937073 1 0.0442748665809631 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721195 chr20:39721205 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_44987 0 0 1 5 2 TOP1 chr20:39721112 3'AG 39721112 Downstream 94bp
chr20 39721205 39721205 1 + G T UCEC 39721195 + 39721175 39721215 41 ATTTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT ATTTGCCCCACCATATGAGCCTCTTCCAGATAATGTCAAGT < 41bp 1 0.0719054169937073 1 0.0442748665809631 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721195 chr20:39721205 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_44987 0 0 1 5 2 TOP1 chr20:39721227 5'GT 39721227 Upstream 23bp
chr19 55899675 55899675 1 + G A UCEC 55899674 + 55899654 55899694 41 CTGTGATGGTGAAGAGGAAGCGGACCCGCCCCACCAAGAGC CTGTGATGGTGAAGAGGAAGCAGACCCGCCCCACCAAGAGC < 41bp 1 0.571592297883831 1 0.55489194393158 experiment 0.856815404232338 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899674 chr19:55899675 nonsynonymous SNV 0.901 1 22 hm5C_associated_SNPs_44988 0 0 1 0 1 RPL28 chr19:55899611 3'AG 55899611 Downstream 65bp
chr11 57373951 57373951 1 + A G UCEC 57373933 + 57373913 57373953 41 ACCAGAATGGAACCCTTTCACTTCAAAAACTCAGTTATAAA ACCAGAATGGAACCCTTTCACTTCAAAAACTCAGTTATGAA < 41bp 1 0.51905653158845 1 0.414606273174286 experiment 0.9618869368231 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373933 chr11:57373951 nonsynonymous SNV 0.654 2 39 hm5C_associated_SNPs_44989 0 0 0 0 2 SERPING1 chr11:57373881 3'AG 57373881 Downstream 71bp
chr11 57373951 57373951 1 + A G UCEC 57373933 + 57373913 57373953 41 ACCAGAATGGAACCCTTTCACTTCAAAAACTCAGTTATAAA ACCAGAATGGAACCCTTTCACTTCAAAAACTCAGTTATGAA < 41bp 1 0.51905653158845 1 0.414606273174286 experiment 0.9618869368231 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373933 chr11:57373951 nonsynonymous SNV 0.654 2 39 hm5C_associated_SNPs_44989 0 0 0 0 2 SERPING1 chr11:57374020 5'GT 57374020 Upstream 70bp
chr1 110561689 110561689 1 + T G UCEC 110561676 + 110561656 110561696 41 CTCTCTTACCTTTCCAGGGTCGTCTACTCAATTTGAGCTGC CTCTCTTACCTTTCCAGGGTCGTCTACTCAATTGGAGCTGC < 41bp 1 0.133775334415224 1 0.0380018651485443 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL1 ENSG00000168710 CDS Human protein_coding chr1:110561676 chr1:110561689 nonsynonymous SNV 1.000 5 34 hm5C_associated_SNPs_44990 0 0 1 0 1 AHCYL1 chr1:110561741 5'GT 110561741 Upstream 53bp
chr2 29344289 29344289 1 + A G UCEC 29344282 + 29344262 29344302 41 TAGAGGACCTTCCAGATTTTCCATTAGAAGGAAATCCTTTG TAGAGGACCTTCCAGATTTTCCATTAGGAGGAAATCCTTTG < 41bp 1 0.0814796821496358 1 0.0441745519638062 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29344282 chr2:29344289 nonsynonymous SNV 0.992 3 28 hm5C_associated_SNPs_44991 0 0 1 1 1 CLIP4 chr2:29344387 5'GT 29344387 Upstream 99bp
chr10 4877951 4877951 1 + G A UCEC 4877959 + 4877939 4877979 41 TTGCCTCTGGACGAGAGCAACATGGTTATTCCCAGTGACAC TTGCCTCTGGACAAGAGCAACATGGTTATTCCCAGTGACAC < 41bp 1 0.552264070577361 1 0.126085013151169 experiment 0.895471858845277 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4877959 chr10:4877951 nonsynonymous SNV 0.002 0 13 hm5C_associated_SNPs_44993 0 0 1 0 2 AKR1E2 chr10:4877867 3'AG 4877867 Downstream 85bp
chr10 4877951 4877951 1 + G A UCEC 4877959 + 4877939 4877979 41 TTGCCTCTGGACGAGAGCAACATGGTTATTCCCAGTGACAC TTGCCTCTGGACAAGAGCAACATGGTTATTCCCAGTGACAC < 41bp 1 0.552264070577361 1 0.126085013151169 experiment 0.895471858845277 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4877959 chr10:4877951 nonsynonymous SNV 0.002 0 13 hm5C_associated_SNPs_44993 0 0 1 0 2 AKR1E2 chr10:4878001 5'GT 4878001 Upstream 51bp
chr16 89970564 89970564 1 + G A UCEC 89970558 + 89970538 89970578 41 TGCTCGAGTCTTGCAGTGTGCGGCCCGACGCCAGCGTTTCC TGCTCGAGTCTTGCAGTGTGCGGCCCAACGCCAGCGTTTCC < 41bp 1 0.448661555712674 1 0.374418824911118 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89970558 chr16:89970564 nonsynonymous SNV 0.018 4 27 hm5C_associated_SNPs_44995 0 0 1 0 2 TCF25 chr16:89970526 3'AG 89970526 Downstream 39bp
chr16 89970564 89970564 1 + G A UCEC 89970558 + 89970538 89970578 41 TGCTCGAGTCTTGCAGTGTGCGGCCCGACGCCAGCGTTTCC TGCTCGAGTCTTGCAGTGTGCGGCCCAACGCCAGCGTTTCC < 41bp 1 0.448661555712674 1 0.374418824911118 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89970558 chr16:89970564 nonsynonymous SNV 0.018 4 27 hm5C_associated_SNPs_44995 0 0 1 0 2 TCF25 chr16:89970613 5'GT 89970613 Upstream 50bp
chr1 162725003 162725003 1 + A G UCEC 162725020 + 162725000 162725040 41 CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA CCCGTTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA < 41bp 1 0.485608793241523 1 0.807188391685486 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162725020 chr1:162725003 nonsynonymous SNV 0.915 2 4 hm5C_associated_SNPs_44996 0 0 0 0 2 DDR2 chr1:162724946 3'AG 162724946 Downstream 58bp
chr1 162725003 162725003 1 + A G UCEC 162725020 + 162725000 162725040 41 CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA CCCGTTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA < 41bp 1 0.485608793241523 1 0.807188391685486 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162725020 chr1:162725003 nonsynonymous SNV 0.915 2 4 hm5C_associated_SNPs_44996 0 0 0 0 2 DDR2 chr1:162725093 5'GT 162725093 Upstream 91bp
chr22 25019101 25019101 1 + A C UCEC 25019089 + 25019069 25019109 41 TGCAGGGGGCATTGTGACAGCTGAGGACCTGAACAACTACC TGCAGGGGGCATTGTGACAGCTGAGGACCTGACCAACTACC < 41bp 1 0.597291432386738 1 0.425714790821075 experiment 0.805417135226523 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GGT1 ENSG00000100031 CDS Human protein_coding chr22:25019089 chr22:25019101 nonsynonymous SNV 0.985 0 33 hm5C_associated_SNPs_44997 0 0 0 0 1 GGT1 chr22:25019074 3'AG 25019074 Downstream 28bp
chr13 92051391 92051391 1 + G A UCEC 92051411 + 92051391 92051431 41 GAAGAAGTTCGGAAACTTTTCCAGTGGCGGCTGCTGGGAGC AAAGAAGTTCGGAAACTTTTCCAGTGGCGGCTGCTGGGAGC < 41bp 1 0.489087198896982 1 0.748411178588867 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPC5 ENSG00000179399 CDS Human protein_coding chr13:92051411 chr13:92051391 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_44998 0 0 0 0 1 GPC5 chr13:92051463 5'GT 92051463 Upstream 73bp
chr22 25007054 25007054 1 + G T UCEC 25007048 + 25007028 25007068 41 CCCCGTGGGTGCAGCAGAGCCATGAAGAAGAAGTTAGTGGT CCCCGTGGGTGCAGCAGAGCCATGAATAAGAAGTTAGTGGT < 41bp 1 0.617481216949365 1 0.390402674674988 experiment 0.765037566101269 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GGT1 ENSG00000100031 CDS Human protein_coding chr22:25007048 chr22:25007054 nonsynonymous SNV 0.827 1 27 hm5C_associated_SNPs_44999 0 0 0 0 2 GGT1 chr22:25007042 3'AG 25007042 Downstream 13bp
chr22 25007054 25007054 1 + G T UCEC 25007048 + 25007028 25007068 41 CCCCGTGGGTGCAGCAGAGCCATGAAGAAGAAGTTAGTGGT CCCCGTGGGTGCAGCAGAGCCATGAATAAGAAGTTAGTGGT < 41bp 1 0.617481216949365 1 0.390402674674988 experiment 0.765037566101269 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GGT1 ENSG00000100031 CDS Human protein_coding chr22:25007048 chr22:25007054 nonsynonymous SNV 0.827 1 27 hm5C_associated_SNPs_44999 0 0 0 0 2 GGT1 chr22:25007045 3'AG 25007045 Downstream 10bp
chr5 73989527 73989527 1 + G A UCEC 73989526 + 73989506 73989546 41 ACAGAGTTTGGGGAGCATTACGAGGTAAGTTCCATGCAGTT ACAGAGTTTGGGGAGCATTACAAGGTAAGTTCCATGCAGTT < 41bp 1 0.633911514947067 1 0.838638603687286 experiment 0.732176970105867 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HEXB ENSG00000049860 CDS Human protein_coding chr5:73989526 chr5:73989527 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_45000 0 0 1 0 2 HEXB chr5:73989464 3'AG 73989464 Downstream 64bp
chr5 73989527 73989527 1 + G A UCEC 73989526 + 73989506 73989546 41 ACAGAGTTTGGGGAGCATTACGAGGTAAGTTCCATGCAGTT ACAGAGTTTGGGGAGCATTACAAGGTAAGTTCCATGCAGTT < 41bp 1 0.633911514947067 1 0.838638603687286 experiment 0.732176970105867 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HEXB ENSG00000049860 CDS Human protein_coding chr5:73989526 chr5:73989527 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_45000 0 0 1 0 2 HEXB chr5:73989529 5'GT 73989529 Upstream 3bp
chr16 30727510 30727510 1 + A G UCEC 30727523 + 30727503 30727543 41 TGACTTCATGGCACAGACCACGTAAGGGAGGAAGGAGGGTG TGACTTCGTGGCACAGACCACGTAAGGGAGGAAGGAGGGTG < 41bp 1 0.239952558858799 1 0.139658063650131 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30727523 chr16:30727510 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_45001 0 0 1 0 1 SRCAP chr16:30727523 5'GT 30727523 Upstream 14bp
chr11 73075572 73075572 1 + C A UCEC 73075552 + 73075532 73075572 41 ACCTTGGGCACCCAGGGGAGCCCCATCACCAAGATGGTATC ACCTTGGGCACCCAGGGGAGCCCCATCACCAAGATGGTATA < 41bp 1 0.160416267551314 1 0.0451797544956207 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73075552 chr11:73075572 nonsynonymous SNV 0.999 1 41 hm5C_associated_SNPs_45003 0 0 1 0 2 ARHGEF17 chr11:73075497 3'AG 73075497 Downstream 76bp
chr11 73075572 73075572 1 + C A UCEC 73075552 + 73075532 73075572 41 ACCTTGGGCACCCAGGGGAGCCCCATCACCAAGATGGTATC ACCTTGGGCACCCAGGGGAGCCCCATCACCAAGATGGTATA < 41bp 1 0.160416267551314 1 0.0451797544956207 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73075552 chr11:73075572 nonsynonymous SNV 0.999 1 41 hm5C_associated_SNPs_45003 0 0 1 0 2 ARHGEF17 chr11:73075645 5'GT 73075645 Upstream 74bp
chr15 91358383 91358383 1 + C A UCEC 91358367 + 91358347 91358387 41 TAGAAAGATATCTTCCAAAACGAAATCCTCCAGCATCATTG TAGAAAGATATCTTCCAAAACGAAATCCTCCAGCATAATTG < 41bp 1 0.610418465313931 1 0.0734100639820099 experiment 0.779163069372138 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91358367 chr15:91358383 synonymous SNV . 0 37 hm5C_associated_SNPs_45005 0 0 1 0 1 BLM chr15:91358332 3'AG 91358332 Downstream 52bp
chr14 76455293 76455293 1 + G T UCEC 76455279 + 76455259 76455299 41 AGTCAGCGCAGGCCGAGAATCACCTCAATGGCAAGAATTCC AGTCAGCGCAGGCCGAGAATCACCTCAATGGCAATAATTCC < 41bp 1 0.556809776083397 1 0.133593499660492 experiment 0.886380447833207 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFT43 ENSG00000119650 CDS Human protein_coding chr14:76455279 chr14:76455293 nonsynonymous SNV 0.994 1 35 hm5C_associated_SNPs_45006 0 0 1 0 2 IFT43 chr14:76455228 3'AG 76455228 Downstream 66bp
chr14 76455293 76455293 1 + G T UCEC 76455279 + 76455259 76455299 41 AGTCAGCGCAGGCCGAGAATCACCTCAATGGCAAGAATTCC AGTCAGCGCAGGCCGAGAATCACCTCAATGGCAATAATTCC < 41bp 1 0.556809776083397 1 0.133593499660492 experiment 0.886380447833207 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFT43 ENSG00000119650 CDS Human protein_coding chr14:76455279 chr14:76455293 nonsynonymous SNV 0.994 1 35 hm5C_associated_SNPs_45006 0 0 1 0 2 IFT43 chr14:76455320 5'GT 76455320 Upstream 28bp
chr15 50789390 50789390 1 + C A UCEC 50789404 + 50789384 50789424 41 AGAAATCTGGAAGTTACCACCTGTGCTTTTAGTGCATCTGA AGAAATATGGAAGTTACCACCTGTGCTTTTAGTGCATCTGA < 41bp 1 0.34613480514281 1 0.317891657352448 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control USP8 ENSG00000138592 CDS Human protein_coding chr15:50789404 chr15:50789390 synonymous SNV . 0 7 hm5C_associated_SNPs_45007 0 0 1 0 1 USP8 chr15:50789428 5'GT 50789428 Upstream 39bp
chr11 66009076 66009076 1 + T G UCEC 66009069 + 66009049 66009089 41 CTGCCCCATAGTGGGGAGGCCCAGCTTTCTGGCACCATGGC CTGCCCCATAGTGGGGAGGCCCAGCTTGCTGGCACCATGGC < 41bp 1 0.0825280080159562 1 0.0996669232845306 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:66009069 chr11:66009076 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_45008 0 0 0 0 1 PACS1 chr11:66009124 5'GT 66009124 Upstream 49bp
chr16 81654499 81654499 1 + C T UCEC 81654513 + 81654493 81654533 41 TACCTGCGAGACCAGTGGTTCCATTCTCTGCAATGGAAGGT TACCTGTGAGACCAGTGGTTCCATTCTCTGCAATGGAAGGT < 41bp 1 0.0148744096315347 1 0.0713131129741669 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CMIP ENSG00000153815 CDS Human protein_coding chr16:81654513 chr16:81654499 stopgain 0.997 1 7 hm5C_associated_SNPs_45009 0 0 1 0 2 CMIP chr16:81654481 3'AG 81654481 Downstream 19bp
chr16 81654499 81654499 1 + C T UCEC 81654513 + 81654493 81654533 41 TACCTGCGAGACCAGTGGTTCCATTCTCTGCAATGGAAGGT TACCTGTGAGACCAGTGGTTCCATTCTCTGCAATGGAAGGT < 41bp 1 0.0148744096315347 1 0.0713131129741669 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CMIP ENSG00000153815 CDS Human protein_coding chr16:81654513 chr16:81654499 stopgain 0.997 1 7 hm5C_associated_SNPs_45009 0 0 1 0 2 CMIP chr16:81654531 5'GT 81654531 Upstream 33bp
chr5 179151663 179151663 1 + G T UCEC 179151661 + 179151641 179151681 41 TTTGGGGAACATTTCAGAAACAGACCAGTGGTATGGAGTAT TTTGGGGAACATTTCAGAAACATACCAGTGGTATGGAGTAT < 41bp 1 0.0824494833728036 1 0.0570405721664429 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179151661 chr5:179151663 nonsynonymous SNV 0.859 0 23 hm5C_associated_SNPs_45010 0 0 1 0 1 CANX chr5:179151658 3'AG 179151658 Downstream 6bp
chr5 179151663 179151663 1 + G T UCEC 179151665 + 179151645 179151685 41 GGGAACATTTCAGAAACAGACCAGTGGTATGGAGTATAAGA GGGAACATTTCAGAAACATACCAGTGGTATGGAGTATAAGA < 41bp 1 0.227571293629297 1 0.0496888756752014 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179151665 chr5:179151663 nonsynonymous SNV 0.859 0 19 hm5C_associated_SNPs_45011 0 0 1 0 1 CANX chr5:179151658 3'AG 179151658 Downstream 6bp
chr2 114709357 114709357 1 + G T UCEC 114709370 + 114709350 114709390 41 GCAAAGAGATTTGAAAAGAACTGTAGATGCCCGGCTGAAAT GCAAAGATATTTGAAAAGAACTGTAGATGCCCGGCTGAAAT < 41bp 1 0.711562870470093 1 0.311671853065491 experiment 0.576874259059814 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTR3 ENSG00000115091 CDS Human protein_coding chr2:114709370 chr2:114709357 nonsynonymous SNV 1.000 5 8 hm5C_associated_SNPs_45012 0 0 1 0 2 ACTR3 chr2:114709297 3'AG 114709297 Downstream 61bp
chr2 114709357 114709357 1 + G T UCEC 114709370 + 114709350 114709390 41 GCAAAGAGATTTGAAAAGAACTGTAGATGCCCGGCTGAAAT GCAAAGATATTTGAAAAGAACTGTAGATGCCCGGCTGAAAT < 41bp 1 0.711562870470093 1 0.311671853065491 experiment 0.576874259059814 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTR3 ENSG00000115091 CDS Human protein_coding chr2:114709370 chr2:114709357 nonsynonymous SNV 1.000 5 8 hm5C_associated_SNPs_45012 0 0 1 0 2 ACTR3 chr2:114709422 5'GT 114709422 Upstream 66bp
chr11 61631196 61631196 1 + C T UCEC 61631203 + 61631183 61631223 41 CAGCCACCTGCAACGTGGAGCAGTCCTTCTTCAACGACTGG CAGCCACCTGCAATGTGGAGCAGTCCTTCTTCAACGACTGG < 41bp 1 0.0275353349781799 1 0.336595147848129 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61631203 chr11:61631196 synonymous SNV . 0 14 hm5C_associated_SNPs_45013 0 0 1 0 2 FADS2 chr11:61631179 3'AG 61631179 Downstream 18bp
chr11 61631196 61631196 1 + C T UCEC 61631203 + 61631183 61631223 41 CAGCCACCTGCAACGTGGAGCAGTCCTTCTTCAACGACTGG CAGCCACCTGCAATGTGGAGCAGTCCTTCTTCAACGACTGG < 41bp 1 0.0275353349781799 1 0.336595147848129 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61631203 chr11:61631196 synonymous SNV . 0 14 hm5C_associated_SNPs_45013 0 0 1 0 2 FADS2 chr11:61631258 5'GT 61631258 Upstream 63bp
chr11 6631711 6631711 1 + C T UCEC 6631708 + 6631688 6631728 41 CGCAGGTGGCATTGGAAGGCCTTCGGCCTACCATCCCACCA CGCAGGTGGCATTGGAAGGCCTTTGGCCTACCATCCCACCA < 41bp 1 0.14992359041317 1 0.24207216501236 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6631708 chr11:6631711 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_45014 0 0 1 0 1 ILK chr11:6631693 3'AG 6631693 Downstream 19bp
chr1 16349147 16349147 1 + C A UCEC 16349157 + 16349137 16349177 41 GTGAGGGCTTCTCAGGGGACCCTGTGACTCTGCAGGAGCTG GTGAGGGCTTATCAGGGGACCCTGTGACTCTGCAGGAGCTG < 41bp 1 0.144574892175189 1 0.09518101811409 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16349157 chr1:16349147 nonsynonymous SNV 0.227 1 11 hm5C_associated_SNPs_45017 0 0 0 0 2 CLCNKA chr1:16349108 3'AG 16349108 Downstream 40bp
chr1 16349147 16349147 1 + C A UCEC 16349157 + 16349137 16349177 41 GTGAGGGCTTCTCAGGGGACCCTGTGACTCTGCAGGAGCTG GTGAGGGCTTATCAGGGGACCCTGTGACTCTGCAGGAGCTG < 41bp 1 0.144574892175189 1 0.09518101811409 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16349157 chr1:16349147 nonsynonymous SNV 0.227 1 11 hm5C_associated_SNPs_45017 0 0 0 0 2 CLCNKA chr1:16349214 5'GT 16349214 Upstream 68bp
chr4 103500147 103500147 1 + C G UCEC 103500160 + 103500140 103500180 41 CTGGCAGCTTCACAAGGCGCCTGGAACCCGTGGTATCAGAC CTGGCAGGTTCACAAGGCGCCTGGAACCCGTGGTATCAGAC < 41bp 1 0.681574761970572 1 0.358169585466385 experiment 0.636850476058855 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103500160 chr4:103500147 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_45018 0 0 1 0 1 NFKB1 chr4:103500196 5'GT 103500196 Upstream 50bp
chr19 30498484 30498484 1 + G T UCEC 30498487 + 30498467 30498507 41 ATTTGCTAGCTGATAAAGAACTGTGGGCTCGACTTGAAGAA ATTTGCTAGCTGATAAATAACTGTGGGCTCGACTTGAAGAA < 41bp 1 0.760479972437433 1 0.0776900053024292 experiment 0.479040055125134 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control URI1 ENSG00000105176 CDS Human protein_coding chr19:30498487 chr19:30498484 stopgain 0.959 1 18 hm5C_associated_SNPs_45019 0 0 1 0 1 URI1 chr19:30498545 5'GT 30498545 Upstream 62bp
chr3 184038428 184038428 1 + G A UCEC 184038413 + 184038393 184038433 41 TCATCTTATAGCTTTCTTTCCCCAGATCCGAATTCGAGATC TCATCTTATAGCTTTCTTTCCCCAGATCCGAATTCAAGATC < 41bp 1 0.137330932952925 1 0.280240654945374 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184038413 chr3:184038428 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_45020 0 0 1 0 1 EIF4G1 chr3:184038418 3'AG 184038418 Downstream 11bp
chr11 85977204 85977204 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGATAATGATGAA < 41bp 1 0.170166720033489 1 0.165116459131241 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977204 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_45022 0 0 1 13 2 EED chr11:85977125 3'AG 85977125 Downstream 80bp
chr11 85977204 85977204 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGATAATGATGAA < 41bp 1 0.170166720033489 1 0.165116459131241 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977204 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_45022 0 0 1 13 2 EED chr11:85977258 5'GT 85977258 Upstream 55bp
chr7 128477720 128477720 1 + C A UCEC 128477710 + 128477690 128477730 41 GGCATCGAGCCACAGGGCAACACCGTGCTGCAGCCTGCCCA GGCATCGAGCCACAGGGCAACACCGTGCTGAAGCCTGCCCA < 41bp 1 0.414441336729198 1 0.206689924001694 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128477710 chr7:128477720 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_45023 0 0 0 0 2 FLNC chr7:128477691 3'AG 128477691 Downstream 30bp
chr7 128477720 128477720 1 + C A UCEC 128477710 + 128477690 128477730 41 GGCATCGAGCCACAGGGCAACACCGTGCTGCAGCCTGCCCA GGCATCGAGCCACAGGGCAACACCGTGCTGAAGCCTGCCCA < 41bp 1 0.414441336729198 1 0.206689924001694 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128477710 chr7:128477720 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_45023 0 0 0 0 2 FLNC chr7:128477809 5'GT 128477809 Upstream 90bp
chr2 73681183 73681183 1 + T C UCEC 73681178 + 73681158 73681198 41 AATGCAGAGGAAGAGGAAAGCCGGGTACGAGCACATGGTAA AATGCAGAGGAAGAGGAAAGCCGGGCACGAGCACATGGTAA < 41bp 1 0.238037066782308 1 0.844027161598206 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ALMS1 ENSG00000116127 CDS Human protein_coding chr2:73681178 chr2:73681183 nonsynonymous SNV 0.880 3 26 hm5C_associated_SNPs_45024 0 0 0 0 1 ALMS1 chr2:73681194 5'GT 73681194 Upstream 12bp
chrX 129063378 129063378 1 + G T UCEC 129063370 + 129063350 129063390 41 ATTTGAAAGGACCATCCAGACCCCCATAGGATCCACATGGA ATTTGAAAGGACCATCCAGACCCCCATATGATCCACATGGA < 41bp 1 0.318961500713839 1 0.0807239413261414 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UTP14A ENSG00000156697 CDS Human protein_coding chrX:129063370 chrX:129063378 stopgain 0.999 1 29 hm5C_associated_SNPs_45025 0 0 0 0 1 UTP14A chrX:129063312 3'AG 129063312 Downstream 67bp
chr9 123917083 123917083 1 + T C UCEC 123917066 + 123917046 123917086 41 TAGAAAAATCACTCAAACATCATGAAGATATTGTAGATGAA TAGAAAAATCACTCAAACATCATGAAGATATTGTAGACGAA < 41bp 1 0.341707442567026 1 0.103630632162094 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNTRL ENSG00000119397 CDS Human protein_coding chr9:123917066 chr9:123917083 synonymous SNV . 0 38 hm5C_associated_SNPs_45026 0 0 0 0 1 CNTRL chr9:123916999 3'AG 123916999 Downstream 85bp
chr14 75359624 75359624 1 + C T UCEC 75359614 + 75359594 75359634 41 AACCTACAGCAGCGGCAGTTCCTCCCCCTGCAGCACCCATA AACCTACAGCAGCGGCAGTTCCTCCCCCTGTAGCACCCATA < 41bp 1 0.104044110982863 1 0.237326741218567 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DLST ENSG00000119689 CDS Human protein_coding chr14:75359614 chr14:75359624 nonsynonymous SNV 0.654 0 31 hm5C_associated_SNPs_45027 0 0 1 0 2 DLST chr14:75359537 3'AG 75359537 Downstream 88bp
chr14 75359624 75359624 1 + C T UCEC 75359614 + 75359594 75359634 41 AACCTACAGCAGCGGCAGTTCCTCCCCCTGCAGCACCCATA AACCTACAGCAGCGGCAGTTCCTCCCCCTGTAGCACCCATA < 41bp 1 0.104044110982863 1 0.237326741218567 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DLST ENSG00000119689 CDS Human protein_coding chr14:75359614 chr14:75359624 nonsynonymous SNV 0.654 0 31 hm5C_associated_SNPs_45027 0 0 1 0 2 DLST chr14:75359689 5'GT 75359689 Upstream 66bp
chr16 29994487 29994487 1 + G A UCEC 29994488 + 29994468 29994508 41 ATCAGCGCCTCCAGCCAGAGCAGCTCCGTCAACAGCCTAGC ATCAGCGCCTCCAGCCAGAACAGCTCCGTCAACAGCCTAGC < 41bp 1 0.361296423993393 1 0.370896458625793 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994488 chr16:29994487 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_45030 0 0 1 0 1 TAOK2 chr16:29994393 3'AG 29994393 Downstream 95bp
chr16 29994487 29994487 1 + G A UCEC 29994493 + 29994473 29994513 41 CGCCTCCAGCCAGAGCAGCTCCGTCAACAGCCTAGCAGATG CGCCTCCAGCCAGAACAGCTCCGTCAACAGCCTAGCAGATG < 41bp 1 0.0705609906654147 1 0.137208968400955 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994493 chr16:29994487 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_45031 0 0 1 0 1 TAOK2 chr16:29994393 3'AG 29994393 Downstream 95bp
chr16 58286708 58286708 1 + G A UCEC 58286704 + 58286684 58286724 41 CTAAACTGGAGCCCAGGGATCAGCGACCTCCACGATTATCA CTAAACTGGAGCCCAGGGATCAGCAACCTCCACGATTATCA < 41bp 1 0.648819203354115 1 0.411874383687973 experiment 0.702361593291771 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58286704 chr16:58286708 nonsynonymous SNV 0.036 0 25 hm5C_associated_SNPs_45032 0 0 0 0 2 CCDC113 chr16:58286631 3'AG 58286631 Downstream 78bp
chr16 58286708 58286708 1 + G A UCEC 58286704 + 58286684 58286724 41 CTAAACTGGAGCCCAGGGATCAGCGACCTCCACGATTATCA CTAAACTGGAGCCCAGGGATCAGCAACCTCCACGATTATCA < 41bp 1 0.648819203354115 1 0.411874383687973 experiment 0.702361593291771 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58286704 chr16:58286708 nonsynonymous SNV 0.036 0 25 hm5C_associated_SNPs_45032 0 0 0 0 2 CCDC113 chr16:58286757 5'GT 58286757 Upstream 50bp
chr15 22962524 22962524 1 + G A UCEC 22962534 + 22962514 22962554 41 GCTACGAGACGCTGCTGAAGCAGAGGCATGTGCAGGTGAGC GCTACGAGACACTGCTGAAGCAGAGGCATGTGCAGGTGAGC < 41bp 1 0.668777219909825 1 0.730197191238403 experiment 0.66244556018035 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22962534 chr15:22962524 synonymous SNV . 0 11 hm5C_associated_SNPs_45033 0 0 1 0 2 CYFIP1 chr15:22962440 3'AG 22962440 Downstream 85bp
chr15 22962524 22962524 1 + G A UCEC 22962534 + 22962514 22962554 41 GCTACGAGACGCTGCTGAAGCAGAGGCATGTGCAGGTGAGC GCTACGAGACACTGCTGAAGCAGAGGCATGTGCAGGTGAGC < 41bp 1 0.668777219909825 1 0.730197191238403 experiment 0.66244556018035 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22962534 chr15:22962524 synonymous SNV . 0 11 hm5C_associated_SNPs_45033 0 0 1 0 2 CYFIP1 chr15:22962548 5'GT 22962548 Upstream 25bp
chr2 157406258 157406258 1 + G A UCEC 157406248 + 157406228 157406268 41 ACCCCCAGACAGGGAAAGTGCGTGTGAGCGGCGCACGGTGC ACCCCCAGACAGGGAAAGTGCGTGTGAGCGACGCACGGTGC < 41bp 1 0.643893585094504 1 0.398078918457031 experiment 0.712212829810992 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157406248 chr2:157406258 nonsynonymous SNV 0.040 4 31 hm5C_associated_SNPs_45035 0 0 0 0 1 GPD2 chr2:157406284 5'GT 157406284 Upstream 27bp
chr11 67378031 67378031 1 + C T UCEC 67378025 + 67378005 67378045 41 AAGCCCCGCCTGAAGCCCCCCTTCCCCGCAGACGTGGGTAA AAGCCCCGCCTGAAGCCCCCCTTCCCTGCAGACGTGGGTAA < 41bp 1 0.153054170188236 1 0.197046250104904 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67378025 chr11:67378031 synonymous SNV . 0 27 hm5C_associated_SNPs_45036 0 0 1 0 1 NDUFV1 chr11:67378041 5'GT 67378041 Upstream 11bp
chr8 145166658 145166658 1 + C T UCEC 145166669 + 145166649 145166689 41 AATTACCTCCGTCTGATCTACGGCTCTGGCCTGCTGGTAGG AATTACCTCTGTCTGATCTACGGCTCTGGCCTGCTGGTAGG < 41bp 1 0.35645118856794 1 0.356596648693085 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166669 chr8:145166658 nonsynonymous SNV 0.016 1 10 hm5C_associated_SNPs_45037 0 0 0 0 1 WDR97 chr8:145166684 5'GT 145166684 Upstream 27bp
chr2 135160648 135160648 1 + C T UCEC 135160666 + 135160646 135160686 41 TACGTGAAAAACCATGGTATCCTCAGTGGACGGGACCTGCA TATGTGAAAAACCATGGTATCCTCAGTGGACGGGACCTGCA < 41bp 1 0.221684658075637 1 0.097765326499939 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135160666 chr2:135160648 synonymous SNV . 0 3 hm5C_associated_SNPs_45038 0 0 1 0 2 MGAT5 chr2:135160559 3'AG 135160559 Downstream 90bp
chr2 135160648 135160648 1 + C T UCEC 135160666 + 135160646 135160686 41 TACGTGAAAAACCATGGTATCCTCAGTGGACGGGACCTGCA TATGTGAAAAACCATGGTATCCTCAGTGGACGGGACCTGCA < 41bp 1 0.221684658075637 1 0.097765326499939 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135160666 chr2:135160648 synonymous SNV . 0 3 hm5C_associated_SNPs_45038 0 0 1 0 2 MGAT5 chr2:135160708 5'GT 135160708 Upstream 61bp
chr20 44038657 44038657 1 + C T UCEC 44038672 + 44038652 44038692 41 TCCTCCGACTCCTCCACCAACCTGCATAGCCCAAATCCAAG TCCTCTGACTCCTCCACCAACCTGCATAGCCCAAATCCAAG < 41bp 1 0.10866299644116 1 0.433663725852966 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DBNDD2 ENSG00000244274 CDS Human protein_coding chr20:44038672 chr20:44038657 synonymous SNV . 0 6 hm5C_associated_SNPs_45040 0 0 1 0 1 DBNDD2 chr20:44038572 3'AG 44038572 Downstream 86bp
chr13 24242897 24242897 1 + C T UCEC 24242887 + 24242867 24242907 41 CTTCGGATCCCTCACGCAGTCCATCTGTGGCGAGTTTTCAG CTTCGGATCCCTCACGCAGTCCATCTGTGGTGAGTTTTCAG < 41bp 1 0.0938872079919256 1 0.112648338079453 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24242887 chr13:24242897 synonymous SNV . 0 31 hm5C_associated_SNPs_45041 0 0 1 0 1 TNFRSF19 chr13:24242831 3'AG 24242831 Downstream 67bp
chr19 49593560 49593560 1 + G A UCEC 49593563 + 49593543 49593583 41 CCCAGGACCCTCGAGATGCCCCTCCTCCAACTCGTGCTGAA CCCAGGACCCTCGAGATACCCCTCCTCCAACTCGTGCTGAA < 41bp 1 0.0903445810936937 1 0.114778012037277 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593563 chr19:49593560 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_45042 0 0 1 0 2 SNRNP70 chr19:49593548 3'AG 49593548 Downstream 13bp
chr19 49593560 49593560 1 + G A UCEC 49593563 + 49593543 49593583 41 CCCAGGACCCTCGAGATGCCCCTCCTCCAACTCGTGCTGAA CCCAGGACCCTCGAGATACCCCTCCTCCAACTCGTGCTGAA < 41bp 1 0.0903445810936937 1 0.114778012037277 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593563 chr19:49593560 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_45042 0 0 1 0 2 SNRNP70 chr19:49593610 5'GT 49593610 Upstream 51bp
chr19 49593560 49593560 1 + G A UCEC 49593564 + 49593544 49593584 41 CCAGGACCCTCGAGATGCCCCTCCTCCAACTCGTGCTGAAA CCAGGACCCTCGAGATACCCCTCCTCCAACTCGTGCTGAAA < 41bp 1 0.229432457359906 1 0.636249601840973 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593564 chr19:49593560 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_45043 0 0 1 0 2 SNRNP70 chr19:49593548 3'AG 49593548 Downstream 13bp
chr19 49593560 49593560 1 + G A UCEC 49593564 + 49593544 49593584 41 CCAGGACCCTCGAGATGCCCCTCCTCCAACTCGTGCTGAAA CCAGGACCCTCGAGATACCCCTCCTCCAACTCGTGCTGAAA < 41bp 1 0.229432457359906 1 0.636249601840973 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593564 chr19:49593560 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_45043 0 0 1 0 2 SNRNP70 chr19:49593610 5'GT 49593610 Upstream 51bp
chr12 49888752 49888752 1 + G A UCEC 49888749 + 49888729 49888769 41 ATGCCAGAGAATTGGAGGATCCCGAGTCTGCCATGCTAGAT ATGCCAGAGAATTGGAGGATCCCAAGTCTGCCATGCTAGAT < 41bp 1 0.468583194764554 1 0.127526491880417 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SPATS2 ENSG00000123352 CDS Human protein_coding chr12:49888749 chr12:49888752 nonsynonymous SNV 0.478 3 24 hm5C_associated_SNPs_45044 0 0 1 0 1 SPATS2 chr12:49888785 5'GT 49888785 Upstream 34bp
chr12 6969622 6969622 1 + G T UCEC 6969628 + 6969608 6969648 41 CAGCAGGATGCCCAGGAGTTCTTCCTTCACCTTATCAACAT CAGCAGGATGCCCATGAGTTCTTCCTTCACCTTATCAACAT < 41bp 1 0.220630090764477 1 0.0347322523593903 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control USP5 ENSG00000111667 CDS Human protein_coding chr12:6969628 chr12:6969622 nonsynonymous SNV 0.999 1 15 hm5C_associated_SNPs_45045 0 0 1 0 2 USP5 chr12:6969530 3'AG 6969530 Downstream 93bp
chr12 6969622 6969622 1 + G T UCEC 6969628 + 6969608 6969648 41 CAGCAGGATGCCCAGGAGTTCTTCCTTCACCTTATCAACAT CAGCAGGATGCCCATGAGTTCTTCCTTCACCTTATCAACAT < 41bp 1 0.220630090764477 1 0.0347322523593903 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control USP5 ENSG00000111667 CDS Human protein_coding chr12:6969628 chr12:6969622 nonsynonymous SNV 0.999 1 15 hm5C_associated_SNPs_45045 0 0 1 0 2 USP5 chr12:6969655 5'GT 6969655 Upstream 34bp
chr1 22336306 22336306 1 + A C UCEC 22336287 + 22336267 22336307 41 TTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCAC TTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCCC < 41bp 1 0.210150029681012 1 0.0475148856639862 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336287 chr1:22336306 nonsynonymous SNV 0.218 4 40 hm5C_associated_SNPs_45046 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 45bp
chr1 22336306 22336306 1 + A C UCEC 22336290 + 22336270 22336310 41 GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCCCGGT < 41bp 1 0.611772930391301 1 0.796551942825317 experiment 0.776454139217399 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336290 chr1:22336306 nonsynonymous SNV 0.218 4 37 hm5C_associated_SNPs_45047 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 45bp
chr1 22336306 22336306 1 + A C UCEC 22336293 + 22336273 22336313 41 TCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGTGTT TCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCCCGGTGTT < 41bp 1 0.3646633056111 1 0.404198706150055 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336293 chr1:22336306 nonsynonymous SNV 0.218 4 34 hm5C_associated_SNPs_45048 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 45bp
chr1 22336306 22336306 1 + A C UCEC 22336303 + 22336283 22336323 41 GCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTC GCTGCAACTTCATCTGGAAGCCCCCGGTGTTCACTCGAGTC < 41bp 1 0.234433600119602 1 0.174230873584747 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336303 chr1:22336306 nonsynonymous SNV 0.218 4 24 hm5C_associated_SNPs_45049 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 45bp
chr1 22336306 22336306 1 + A C UCEC 22336304 + 22336284 22336324 41 CTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCT CTGCAACTTCATCTGGAAGCCCCCGGTGTTCACTCGAGTCT < 41bp 1 0.391946142299608 1 0.290760159492493 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336304 chr1:22336306 nonsynonymous SNV 0.218 4 23 hm5C_associated_SNPs_45050 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 45bp
chr1 22336306 22336306 1 + A C UCEC 22336305 + 22336285 22336325 41 TGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTC TGCAACTTCATCTGGAAGCCCCCGGTGTTCACTCGAGTCTC < 41bp 1 0.546105494249111 1 0.149598389863968 experiment 0.907789011501777 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336305 chr1:22336306 nonsynonymous SNV 0.218 4 22 hm5C_associated_SNPs_45051 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 45bp
chr1 22336306 22336306 1 + A C UCEC 22336307 + 22336287 22336327 41 CAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCG CAACTTCATCTGGAAGCCCCCGGTGTTCACTCGAGTCTCCG < 41bp 1 0.412199580916486 1 0.250084638595581 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336307 chr1:22336306 nonsynonymous SNV 0.218 4 20 hm5C_associated_SNPs_45052 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 45bp
chr1 22336306 22336306 1 + A C UCEC 22336314 + 22336294 22336334 41 ATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCAT ATCTGGAAGCCCCCGGTGTTCACTCGAGTCTCCGCCTTCAT < 41bp 1 0.401030524066871 1 0.0164901316165924 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336314 chr1:22336306 nonsynonymous SNV 0.218 4 13 hm5C_associated_SNPs_45053 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 45bp
chr1 22336306 22336306 1 + A C UCEC 22336318 + 22336298 22336338 41 GGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGAC GGAAGCCCCCGGTGTTCACTCGAGTCTCCGCCTTCATCGAC < 41bp 1 0.759866593983675 1 0.498390436172485 experiment 0.48026681203265 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336318 chr1:22336306 nonsynonymous SNV 0.218 4 9 hm5C_associated_SNPs_45054 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 45bp
chr1 22336306 22336306 1 + A C UCEC 22336323 + 22336303 22336343 41 CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT CCCCCGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT < 41bp 1 0.626042679436967 1 0.21685990691185 experiment 0.747914641126065 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336323 chr1:22336306 nonsynonymous SNV 0.218 4 4 hm5C_associated_SNPs_45055 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 45bp
chr1 22336306 22336306 1 + A C UCEC 22336326 + 22336306 22336346 41 ACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGA CCGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGA < 41bp 1 0.395890144528851 1 0.0392768681049347 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336326 chr1:22336306 nonsynonymous SNV 0.218 4 1 hm5C_associated_SNPs_45056 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 45bp
chr3 142422826 142422826 1 + A G UCEC 142422814 + 142422794 142422834 41 GAAGGGAATTCAACACTTACCCTGGCATTGGTATGGCAGCT GAAGGGAATTCAACACTTACCCTGGCATTGGTGTGGCAGCT < 41bp 1 0.328756534673334 1 0.224831104278564 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLS1 ENSG00000120756 CDS Human protein_coding chr3:142422814 chr3:142422826 synonymous SNV . 0 33 hm5C_associated_SNPs_45057 0 0 0 0 1 PLS1 chr3:142422843 5'GT 142422843 Upstream 18bp
chr10 129231595 129231595 1 + C T UCEC 129231605 + 129231585 129231625 41 GTCCATGGTGCGGTCCTTCACGATGCCTTCCTCATCCCGCC GTCCATGGTGTGGTCCTTCACGATGCCTTCCTCATCCCGCC < 41bp 1 0.588145752744153 1 0.792246103286743 experiment 0.823708494511694 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129231605 chr10:129231595 nonsynonymous SNV 0.967 4 11 hm5C_associated_SNPs_45058 0 0 0 0 2 DOCK1 chr10:129231547 3'AG 129231547 Downstream 49bp
chr10 129231595 129231595 1 + C T UCEC 129231605 + 129231585 129231625 41 GTCCATGGTGCGGTCCTTCACGATGCCTTCCTCATCCCGCC GTCCATGGTGTGGTCCTTCACGATGCCTTCCTCATCCCGCC < 41bp 1 0.588145752744153 1 0.792246103286743 experiment 0.823708494511694 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129231605 chr10:129231595 nonsynonymous SNV 0.967 4 11 hm5C_associated_SNPs_45058 0 0 0 0 2 DOCK1 chr10:129231692 5'GT 129231692 Upstream 98bp
chr6 31593349 31593349 1 + A C UCEC 31593332 + 31593312 31593352 41 GTCATGATCCCCGGGGTGGGCTACAGCCTTCAGGCCCACCC GTCATGATCCCCGGGGTGGGCTACAGCCTTCAGGCCCCCCC < 41bp 1 0.676402899135295 1 0.536171674728394 experiment 0.647194201729411 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593332 chr6:31593349 synonymous SNV . 0 38 hm5C_associated_SNPs_45059 0 0 1 0 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 40bp
chr6 31593349 31593349 1 + A C UCEC 31593346 + 31593326 31593366 41 GGTGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTA GGTGGGCTACAGCCTTCAGGCCCCCCCCAGTTCCCTCCCTA < 41bp 1 0.263975483022393 1 0.0766705572605133 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593346 chr6:31593349 synonymous SNV . 0 24 hm5C_associated_SNPs_45060 0 0 1 0 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 40bp
chr6 31593349 31593349 1 + A C UCEC 31593347 + 31593327 31593367 41 GTGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTAC GTGGGCTACAGCCTTCAGGCCCCCCCCAGTTCCCTCCCTAC < 41bp 1 0.18196160774888 1 0.128718197345734 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593347 chr6:31593349 synonymous SNV . 0 23 hm5C_associated_SNPs_45061 0 0 1 0 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 40bp
chr6 31593349 31593349 1 + A C UCEC 31593348 + 31593328 31593368 41 TGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACC TGGGCTACAGCCTTCAGGCCCCCCCCAGTTCCCTCCCTACC < 41bp 1 0.170737012654117 1 0.0451984405517578 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593348 chr6:31593349 synonymous SNV . 0 22 hm5C_associated_SNPs_45062 0 0 1 0 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 40bp
chr6 31593349 31593349 1 + A C UCEC 31593350 + 31593330 31593370 41 GGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGC GGCTACAGCCTTCAGGCCCCCCCCAGTTCCCTCCCTACCGC < 41bp 1 0.554020791819314 1 0.310758143663406 experiment 0.891958416361371 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593350 chr6:31593349 synonymous SNV . 0 20 hm5C_associated_SNPs_45063 0 0 1 0 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 40bp
chr6 31593349 31593349 1 + A C UCEC 31593351 + 31593331 31593371 41 GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCG GCTACAGCCTTCAGGCCCCCCCCAGTTCCCTCCCTACCGCG < 41bp 1 0.374554868327644 1 0.142367631196976 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593351 chr6:31593349 synonymous SNV . 0 19 hm5C_associated_SNPs_45064 0 0 1 0 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 40bp
chr6 31593349 31593349 1 + A C UCEC 31593352 + 31593332 31593372 41 CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGG CTACAGCCTTCAGGCCCCCCCCAGTTCCCTCCCTACCGCGG < 41bp 1 0.306788969077549 1 0.172214388847351 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593352 chr6:31593349 synonymous SNV . 0 18 hm5C_associated_SNPs_45065 0 0 1 0 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 40bp
chr6 31593349 31593349 1 + A C UCEC 31593353 + 31593333 31593373 41 TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGGA TACAGCCTTCAGGCCCCCCCCAGTTCCCTCCCTACCGCGGA < 41bp 1 0.289415212837811 1 0.400724470615387 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593353 chr6:31593349 synonymous SNV . 0 17 hm5C_associated_SNPs_45066 0 0 1 0 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 40bp
chr3 39453847 39453847 1 + T C UCEC 39453861 + 39453841 39453881 41 AACCACTGACTGGTCTTAAGCTGTTCTTGCATAGGCTCTTA AACCACCGACTGGTCTTAAGCTGTTCTTGCATAGGCTCTTA < 41bp 1 0.551380927914952 1 0.0938301980495453 experiment 0.897238144170095 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPSA ENSG00000168028 CDS Human protein_coding chr3:39453861 chr3:39453847 synonymous SNV . 0 7 hm5C_associated_SNPs_45068 0 0 0 1 1 RPSA chr3:39453765 3'AG 39453765 Downstream 83bp
chrX 70517254 70517254 1 + G A UCEC 70517240 + 70517220 70517260 41 TTTTTAGATTTGATGAGGCGCCAAGAAGAACTTCGGAGGAT TTTTTAGATTTGATGAGGCGCCAAGAAGAACTTCAGAGGAT < 41bp 1 0.144577879370992 1 0.30708035826683 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NONO ENSG00000147140 CDS Human protein_coding chrX:70517240 chrX:70517254 nonsynonymous SNV 0.999 1 35 hm5C_associated_SNPs_45069 0 0 1 0 2 NONO chrX:70517227 3'AG 70517227 Downstream 28bp
chrX 70517254 70517254 1 + G A UCEC 70517240 + 70517220 70517260 41 TTTTTAGATTTGATGAGGCGCCAAGAAGAACTTCGGAGGAT TTTTTAGATTTGATGAGGCGCCAAGAAGAACTTCAGAGGAT < 41bp 1 0.144577879370992 1 0.30708035826683 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NONO ENSG00000147140 CDS Human protein_coding chrX:70517240 chrX:70517254 nonsynonymous SNV 0.999 1 35 hm5C_associated_SNPs_45069 0 0 1 0 2 NONO chrX:70517311 5'GT 70517311 Upstream 58bp
chrX 70517254 70517254 1 + G A UCEC 70517241 + 70517221 70517261 41 TTTTAGATTTGATGAGGCGCCAAGAAGAACTTCGGAGGATG TTTTAGATTTGATGAGGCGCCAAGAAGAACTTCAGAGGATG < 41bp 1 0.685994936482136 1 0.367157727479935 experiment 0.628010127035728 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NONO ENSG00000147140 CDS Human protein_coding chrX:70517241 chrX:70517254 nonsynonymous SNV 0.999 1 34 hm5C_associated_SNPs_45070 0 0 1 0 2 NONO chrX:70517227 3'AG 70517227 Downstream 28bp
chrX 70517254 70517254 1 + G A UCEC 70517241 + 70517221 70517261 41 TTTTAGATTTGATGAGGCGCCAAGAAGAACTTCGGAGGATG TTTTAGATTTGATGAGGCGCCAAGAAGAACTTCAGAGGATG < 41bp 1 0.685994936482136 1 0.367157727479935 experiment 0.628010127035728 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NONO ENSG00000147140 CDS Human protein_coding chrX:70517241 chrX:70517254 nonsynonymous SNV 0.999 1 34 hm5C_associated_SNPs_45070 0 0 1 0 2 NONO chrX:70517311 5'GT 70517311 Upstream 58bp
chrX 70517254 70517254 1 + G A UCEC 70517253 + 70517233 70517273 41 TGAGGCGCCAAGAAGAACTTCGGAGGATGGAAGAGCTGCAC TGAGGCGCCAAGAAGAACTTCAGAGGATGGAAGAGCTGCAC < 41bp 1 0.609475789595221 1 0.692869544029236 experiment 0.781048420809558 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517253 chrX:70517254 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_45071 0 0 1 0 2 NONO chrX:70517227 3'AG 70517227 Downstream 28bp
chrX 70517254 70517254 1 + G A UCEC 70517253 + 70517233 70517273 41 TGAGGCGCCAAGAAGAACTTCGGAGGATGGAAGAGCTGCAC TGAGGCGCCAAGAAGAACTTCAGAGGATGGAAGAGCTGCAC < 41bp 1 0.609475789595221 1 0.692869544029236 experiment 0.781048420809558 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517253 chrX:70517254 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_45071 0 0 1 0 2 NONO chrX:70517311 5'GT 70517311 Upstream 58bp
chr1 120269497 120269497 1 + C T UCEC 120269481 + 120269461 120269501 41 TCTATCCTTGCAGGCAGATTCCCCAGGCGACGGCTTCGATG TCTATCCTTGCAGGCAGATTCCCCAGGCGACGGCTTTGATG < 41bp 1 0.770384367627785 1 0.261338949203491 experiment 0.45923126474443 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120269481 chr1:120269497 nonsynonymous SNV 0.637 4 37 hm5C_associated_SNPs_45073 0 0 1 0 2 PHGDH chr1:120269474 3'AG 120269474 Downstream 24bp
chr1 120269497 120269497 1 + C T UCEC 120269481 + 120269461 120269501 41 TCTATCCTTGCAGGCAGATTCCCCAGGCGACGGCTTCGATG TCTATCCTTGCAGGCAGATTCCCCAGGCGACGGCTTTGATG < 41bp 1 0.770384367627785 1 0.261338949203491 experiment 0.45923126474443 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120269481 chr1:120269497 nonsynonymous SNV 0.637 4 37 hm5C_associated_SNPs_45073 0 0 1 0 2 PHGDH chr1:120269528 5'GT 120269528 Upstream 32bp
chr2 136511733 136511733 1 + T C UCEC 136511732 + 136511712 136511752 41 TTCATTAAACTGTACAGATCCTGTAGTGTGTGTTCCATCCA TTCATTAAACTGTACAGATCCCGTAGTGTGTGTTCCATCCA < 41bp 1 0.368891757423427 1 0.0867962837219238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBXN4 ENSG00000144224 CDS Human protein_coding chr2:136511732 chr2:136511733 synonymous SNV . 0 22 hm5C_associated_SNPs_45075 0 0 1 0 1 UBXN4 chr2:136511729 3'AG 136511729 Downstream 5bp
chr9 96427989 96427989 1 + G A UCEC 96427976 + 96427956 96427996 41 CTTCTGCCCTAGCTCCAAGGCTCTCAGGCCCCCGACGAGCC CTTCTGCCCTAGCTCCAAGGCTCTCAGGCCCCCAACGAGCC < 41bp 1 0.126561599474381 1 0.083881676197052 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96427976 chr9:96427989 synonymous SNV . 0 34 hm5C_associated_SNPs_45078 0 0 1 0 1 PHF2 chr9:96427968 3'AG 96427968 Downstream 22bp
chr21 37785211 37785211 1 + C A UCEC 37785214 + 37785194 37785234 41 TGCCTTCCTGGCCATTTCTTCCACGGACGGTTACTGCTCAT TGCCTTCCTGGCCATTTATTCCACGGACGGTTACTGCTCAT < 41bp 1 0.458038788708057 1 0.292892843484879 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37785214 chr21:37785211 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_45079 0 0 1 0 1 CHAF1B chr21:37785182 3'AG 37785182 Downstream 30bp
chr20 1144997 1144997 1 + G A UCEC 1145015 + 1144995 1145035 41 GAGATCTGGCTTCCCAAGAGCACTTATTGACCCTTCCTCAG GAAATCTGGCTTCCCAAGAGCACTTATTGACCCTTCCTCAG < 41bp 1 0.332510320733439 1 0.0189460813999176 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1145015 chr20:1144997 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_45080 0 0 1 0 1 PSMF1 chr20:1144962 3'AG 1144962 Downstream 36bp
chr16 57113038 57113038 1 + G T UCEC 57113028 + 57113008 57113048 41 CAGGCCCTGGATGGATCCCCCCATTTGGAAGAGATCAGGTA CAGGCCCTGGATGGATCCCCCCATTTGGAATAGATCAGGTA < 41bp 1 0.0597881649063632 1 0.0521866977214813 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57113028 chr16:57113038 stopgain 0.971 0 31 hm5C_associated_SNPs_45081 0 0 0 0 2 NLRC5 chr16:57112962 3'AG 57112962 Downstream 77bp
chr16 57113038 57113038 1 + G T UCEC 57113028 + 57113008 57113048 41 CAGGCCCTGGATGGATCCCCCCATTTGGAAGAGATCAGGTA CAGGCCCTGGATGGATCCCCCCATTTGGAATAGATCAGGTA < 41bp 1 0.0597881649063632 1 0.0521866977214813 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57113028 chr16:57113038 stopgain 0.971 0 31 hm5C_associated_SNPs_45081 0 0 0 0 2 NLRC5 chr16:57113045 5'GT 57113045 Upstream 8bp
chr4 123145707 123145707 1 + C T UCEC 123145724 + 123145704 123145744 41 GGTCTCCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG GGTTTCCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG < 41bp 1 0.422489790425469 1 0.212111860513687 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123145724 chr4:123145707 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_45082 0 0 1 0 2 KIAA1109 chr4:123145653 3'AG 123145653 Downstream 55bp
chr4 123145707 123145707 1 + C T UCEC 123145724 + 123145704 123145744 41 GGTCTCCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG GGTTTCCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG < 41bp 1 0.422489790425469 1 0.212111860513687 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123145724 chr4:123145707 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_45082 0 0 1 0 2 KIAA1109 chr4:123145656 3'AG 123145656 Downstream 52bp
chrX 123229241 123229241 1 + G A UCEC 123229250 + 123229230 123229270 41 AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT AAAGAACAGACAAGAGAGAACAGAACTGAAGCCTGATTTCT < 41bp 1 0.405748877180851 1 0.423438400030136 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123229250 chrX:123229241 nonsynonymous SNV 0.998 3 12 hm5C_associated_SNPs_45084 0 0 1 0 2 STAG2 chrX:123229222 3'AG 123229222 Downstream 20bp
chrX 123229241 123229241 1 + G A UCEC 123229250 + 123229230 123229270 41 AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT AAAGAACAGACAAGAGAGAACAGAACTGAAGCCTGATTTCT < 41bp 1 0.405748877180851 1 0.423438400030136 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123229250 chrX:123229241 nonsynonymous SNV 0.998 3 12 hm5C_associated_SNPs_45084 0 0 1 0 2 STAG2 chrX:123229299 5'GT 123229299 Upstream 59bp
chr22 47290704 47290704 1 + A C UCEC 47290696 + 47290676 47290716 41 CCAGATCCACATAGACATCCCTCGCATGAGCCCTGAAGCGT CCAGATCCACATAGACATCCCTCGCATGCGCCCTGAAGCGT < 41bp 1 0.292345912194838 1 0.0834000110626221 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBC1D22A ENSG00000054611 CDS Human protein_coding chr22:47290696 chr22:47290704 nonsynonymous SNV 0.978 3 29 hm5C_associated_SNPs_45085 0 0 1 0 2 TBC1D22A chr22:47290680 3'AG 47290680 Downstream 25bp
chr22 47290704 47290704 1 + A C UCEC 47290696 + 47290676 47290716 41 CCAGATCCACATAGACATCCCTCGCATGAGCCCTGAAGCGT CCAGATCCACATAGACATCCCTCGCATGCGCCCTGAAGCGT < 41bp 1 0.292345912194838 1 0.0834000110626221 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBC1D22A ENSG00000054611 CDS Human protein_coding chr22:47290696 chr22:47290704 nonsynonymous SNV 0.978 3 29 hm5C_associated_SNPs_45085 0 0 1 0 2 TBC1D22A chr22:47290742 5'GT 47290742 Upstream 39bp
chr1 200730050 200730050 1 + C A UCEC 200730036 + 200730016 200730056 41 CCAGGAACACATCAAACCACCTGTTGTTAATTTGCTTCTAT CCAGGAACACATCAAACCACCTGTTGTTAATTTGATTCTAT < 41bp 1 0.162278872189752 1 0.0546545386314392 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200730036 chr1:200730050 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_45086 0 0 1 0 1 CAMSAP2 chr1:200729967 3'AG 200729967 Downstream 84bp
chr11 61632663 61632663 1 + C T UCEC 61632668 + 61632648 61632688 41 CAACTTACACAAGATCGCCCCGCTGGTGAAGTCTCTATGTG CAACTTACACAAGATTGCCCCGCTGGTGAAGTCTCTATGTG < 41bp 1 0.370394160201705 1 0.147710055112839 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61632668 chr11:61632663 synonymous SNV . 0 16 hm5C_associated_SNPs_45087 0 0 1 0 2 FADS2 chr11:61632624 3'AG 61632624 Downstream 40bp
chr11 61632663 61632663 1 + C T UCEC 61632668 + 61632648 61632688 41 CAACTTACACAAGATCGCCCCGCTGGTGAAGTCTCTATGTG CAACTTACACAAGATTGCCCCGCTGGTGAAGTCTCTATGTG < 41bp 1 0.370394160201705 1 0.147710055112839 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61632668 chr11:61632663 synonymous SNV . 0 16 hm5C_associated_SNPs_45087 0 0 1 0 2 FADS2 chr11:61632749 5'GT 61632749 Upstream 87bp
chr11 61632663 61632663 1 + C T UCEC 61632670 + 61632650 61632690 41 ACTTACACAAGATCGCCCCGCTGGTGAAGTCTCTATGTGCC ACTTACACAAGATTGCCCCGCTGGTGAAGTCTCTATGTGCC < 41bp 1 0.530307877028594 1 0.353135406970978 experiment 0.939384245942811 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61632670 chr11:61632663 synonymous SNV . 0 14 hm5C_associated_SNPs_45088 0 0 1 0 2 FADS2 chr11:61632624 3'AG 61632624 Downstream 40bp
chr11 61632663 61632663 1 + C T UCEC 61632670 + 61632650 61632690 41 ACTTACACAAGATCGCCCCGCTGGTGAAGTCTCTATGTGCC ACTTACACAAGATTGCCCCGCTGGTGAAGTCTCTATGTGCC < 41bp 1 0.530307877028594 1 0.353135406970978 experiment 0.939384245942811 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61632670 chr11:61632663 synonymous SNV . 0 14 hm5C_associated_SNPs_45088 0 0 1 0 2 FADS2 chr11:61632749 5'GT 61632749 Upstream 87bp
chr4 166254697 166254697 1 + G T UCEC 166254694 + 166254674 166254714 41 CATGGGGATCCCTTATAGTTCATGAAGCCCTTTATTTCTTA CATGGGGATCCCTTATAGTTCATTAAGCCCTTTATTTCTTA < 41bp 1 0.264232690810834 1 0.0160024166107178 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MSMO1 ENSG00000052802 CDS Human protein_coding chr4:166254694 chr4:166254697 stopgain 0.948 1 24 hm5C_associated_SNPs_45090 0 0 1 0 1 MSMO1 chr4:166254777 5'GT 166254777 Upstream 81bp
chr1 145115796 145115796 1 + G T UCEC 145115809 + 145115789 145115829 41 ATGCGAAGTACTTGAACATGCATTCCACTTATGCCAAACTT ATGCGAATTACTTGAACATGCATTCCACTTATGCCAAACTT < 41bp 1 0.0417880528356591 1 0.0492966175079346 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC22B ENSG00000223380 ncRNA_exonic Human other chr1:145115809 chr1:145115796 . . 0 8 hm5C_associated_SNPs_45091 0 0 1 0 1 SEC22B chr1:145115735 3'AG 145115735 Downstream 62bp
chr12 101711341 101711341 1 + G A UCEC 101711330 + 101711310 101711350 41 AAAAGGCAAAGGGATGGTGGCAGAGGAAATCGAAGAGGAAC AAAAGGCAAAGGGATGGTGGCAGAGGAAATCAAAGAGGAAC < 41bp 1 0.38010035792482 1 0.531568288803101 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711330 chr12:101711341 nonsynonymous SNV 0.017 1 32 hm5C_associated_SNPs_45092 0 0 1 0 1 UTP20 chr12:101711256 3'AG 101711256 Downstream 86bp
chr12 101711341 101711341 1 + G A UCEC 101711340 + 101711320 101711360 41 GGGATGGTGGCAGAGGAAATCGAAGAGGAACCTGCCGCAGG GGGATGGTGGCAGAGGAAATCAAAGAGGAACCTGCCGCAGG < 41bp 1 0.666944755213569 1 0.871371984481812 experiment 0.666110489572862 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711340 chr12:101711341 nonsynonymous SNV 0.017 1 22 hm5C_associated_SNPs_45093 0 0 1 0 1 UTP20 chr12:101711256 3'AG 101711256 Downstream 86bp
chr12 101711341 101711341 1 + G A UCEC 101711351 + 101711331 101711371 41 AGAGGAAATCGAAGAGGAACCTGCCGCAGGAGATGATGAAG AGAGGAAATCAAAGAGGAACCTGCCGCAGGAGATGATGAAG < 41bp 1 0.334818380583487 1 0.539670288562775 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711351 chr12:101711341 nonsynonymous SNV 0.017 1 11 hm5C_associated_SNPs_45094 0 0 1 0 1 UTP20 chr12:101711256 3'AG 101711256 Downstream 86bp
chr12 101711341 101711341 1 + G A UCEC 101711354 + 101711334 101711374 41 GGAAATCGAAGAGGAACCTGCCGCAGGAGATGATGAAGAGT GGAAATCAAAGAGGAACCTGCCGCAGGAGATGATGAAGAGT < 41bp 1 0.270881894186231 1 0.43636691570282 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711354 chr12:101711341 nonsynonymous SNV 0.017 1 8 hm5C_associated_SNPs_45095 0 0 1 0 1 UTP20 chr12:101711256 3'AG 101711256 Downstream 86bp
chr12 101711341 101711341 1 + G A UCEC 101711355 + 101711335 101711375 41 GAAATCGAAGAGGAACCTGCCGCAGGAGATGATGAAGAGTT GAAATCAAAGAGGAACCTGCCGCAGGAGATGATGAAGAGTT < 41bp 1 0.431374807344548 1 0.626878619194031 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711355 chr12:101711341 nonsynonymous SNV 0.017 1 7 hm5C_associated_SNPs_45096 0 0 1 0 1 UTP20 chr12:101711256 3'AG 101711256 Downstream 86bp
chr12 101711341 101711341 1 + G A UCEC 101711357 + 101711337 101711377 41 AATCGAAGAGGAACCTGCCGCAGGAGATGATGAAGAGTTGG AATCAAAGAGGAACCTGCCGCAGGAGATGATGAAGAGTTGG < 41bp 1 0.744732200853634 1 0.853346705436707 experiment 0.510535598292731 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711357 chr12:101711341 nonsynonymous SNV 0.017 1 5 hm5C_associated_SNPs_45097 0 0 1 0 1 UTP20 chr12:101711256 3'AG 101711256 Downstream 86bp
chr9 35733119 35733119 1 + G T UCEC 35733112 + 35733092 35733132 41 CATGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTAT CATGACCACACCTACTCCCTCCCACGGTAAACTGTCTCTAT < 41bp 1 0.110849678339061 1 0.0433460175991058 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733112 chr9:35733119 stopgain 0.017 0 28 hm5C_associated_SNPs_45098 0 0 1 0 1 CREB3 chr9:35733140 5'GT 35733140 Upstream 22bp
chr9 35733119 35733119 1 + G T UCEC 35733113 + 35733093 35733133 41 ATGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTATG ATGACCACACCTACTCCCTCCCACGGTAAACTGTCTCTATG < 41bp 1 0.167956723160918 1 0.102048993110657 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733113 chr9:35733119 stopgain 0.017 0 27 hm5C_associated_SNPs_45099 0 0 1 0 1 CREB3 chr9:35733140 5'GT 35733140 Upstream 22bp
chr19 11422855 11422855 1 + G A UCEC 11422851 + 11422831 11422871 41 TCCTAAAAATCACCAAGACTCAGAGCTTCACCCTGAGTGGG TCCTAAAAATCACCAAGACTCAGAACTTCACCCTGAGTGGG < 41bp 1 0.778478739416681 1 0.467606365680695 experiment 0.443042521166639 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TSPAN16 ENSG00000130167 CDS Human protein_coding chr19:11422851 chr19:11422855 nonsynonymous SNV 0.982 3 25 hm5C_associated_SNPs_45100 0 0 0 1 2 TSPAN16 chr19:11422815 3'AG 11422815 Downstream 41bp
chr19 11422855 11422855 1 + G A UCEC 11422851 + 11422831 11422871 41 TCCTAAAAATCACCAAGACTCAGAGCTTCACCCTGAGTGGG TCCTAAAAATCACCAAGACTCAGAACTTCACCCTGAGTGGG < 41bp 1 0.778478739416681 1 0.467606365680695 experiment 0.443042521166639 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TSPAN16 ENSG00000130167 CDS Human protein_coding chr19:11422851 chr19:11422855 nonsynonymous SNV 0.982 3 25 hm5C_associated_SNPs_45100 0 0 0 1 2 TSPAN16 chr19:11422898 5'GT 11422898 Upstream 44bp
chr10 17277195 17277195 1 + G T UCEC 17277176 + 17277156 17277196 41 CACCCCCTGCAGAATGAGTCCCTGGAACGCCAGATGCGTGA CACCCCCTGCAGAATGAGTCCCTGGAACGCCAGATGCGTTA < 41bp 1 0.14534016135476 1 0.108674198389053 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277176 chr10:17277195 stopgain 1.000 1 40 hm5C_associated_SNPs_45101 0 0 1 0 1 VIM chr10:17277168 3'AG 17277168 Downstream 28bp
chr10 17277195 17277195 1 + G T UCEC 17277185 + 17277165 17277205 41 CAGAATGAGTCCCTGGAACGCCAGATGCGTGAAATGGAAGA CAGAATGAGTCCCTGGAACGCCAGATGCGTTAAATGGAAGA < 41bp 1 0.382108708994862 1 0.69793301820755 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277185 chr10:17277195 stopgain 1.000 1 31 hm5C_associated_SNPs_45102 0 0 1 0 1 VIM chr10:17277168 3'AG 17277168 Downstream 28bp
chr10 17277195 17277195 1 + G T UCEC 17277192 + 17277172 17277212 41 AGTCCCTGGAACGCCAGATGCGTGAAATGGAAGAGAACTTT AGTCCCTGGAACGCCAGATGCGTTAAATGGAAGAGAACTTT < 41bp 1 0.247215018222107 1 0.208135426044464 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277192 chr10:17277195 stopgain 1.000 1 24 hm5C_associated_SNPs_45103 0 0 1 0 1 VIM chr10:17277168 3'AG 17277168 Downstream 28bp
chrX 129185902 129185902 1 + C T UCEC 129185891 + 129185871 129185911 41 ATCCTCCTGGGAGCTCAGATCAAGAAGGAGACGATCCGATG ATCCTCCTGGGAGCTCAGATCAAGAAGGAGATGATCCGATG < 41bp 1 0.748595306332944 1 0.870839655399323 experiment 0.502809387334111 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129185891 chrX:129185902 synonymous SNV . 0 32 hm5C_associated_SNPs_45105 0 0 1 0 2 BCORL1 chrX:129185835 3'AG 129185835 Downstream 68bp
chrX 129185902 129185902 1 + C T UCEC 129185891 + 129185871 129185911 41 ATCCTCCTGGGAGCTCAGATCAAGAAGGAGACGATCCGATG ATCCTCCTGGGAGCTCAGATCAAGAAGGAGATGATCCGATG < 41bp 1 0.748595306332944 1 0.870839655399323 experiment 0.502809387334111 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129185891 chrX:129185902 synonymous SNV . 0 32 hm5C_associated_SNPs_45105 0 0 1 0 2 BCORL1 chrX:129185991 5'GT 129185991 Upstream 90bp
chr7 36464165 36464165 1 + C T UCEC 36464155 + 36464135 36464175 41 TAATGCTTTATTTTTCCAGGCAAGATGTATCCAATGACTTT TAATGCTTTATTTTTCCAGGCAAGATGTATTCAATGACTTT < 41bp 1 0.321418878865719 1 0.324450790882111 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36464155 chr7:36464165 nonsynonymous SNV 0.997 3 31 hm5C_associated_SNPs_45106 0 0 1 0 2 ANLN chr7:36464154 3'AG 36464154 Downstream 12bp
chr7 36464165 36464165 1 + C T UCEC 36464155 + 36464135 36464175 41 TAATGCTTTATTTTTCCAGGCAAGATGTATCCAATGACTTT TAATGCTTTATTTTTCCAGGCAAGATGTATTCAATGACTTT < 41bp 1 0.321418878865719 1 0.324450790882111 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36464155 chr7:36464165 nonsynonymous SNV 0.997 3 31 hm5C_associated_SNPs_45106 0 0 1 0 2 ANLN chr7:36464202 5'GT 36464202 Upstream 38bp
chrX 149826334 149826334 1 + C A UCEC 149826326 + 149826306 149826346 41 GGAGCCATTCAAGTAGCAGACAAAGTTTCTTCAGGGAAGAG GGAGCCATTCAAGTAGCAGACAAAGTTTATTCAGGGAAGAG < 41bp 1 0.535137736563588 1 0.320601046085358 experiment 0.929724526872823 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTM1 ENSG00000171100 CDS Human protein_coding chrX:149826326 chrX:149826334 nonsynonymous SNV 0.992 3 29 hm5C_associated_SNPs_45107 0 0 0 0 1 MTM1 chrX:149826294 3'AG 149826294 Downstream 41bp
chr9 100773653 100773653 1 + C T UCEC 100773650 + 100773630 100773670 41 GATGTAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGA GATGTAGAAGGGGATGAGGACGATGATGAAGTCAGTGAGGA < 41bp 1 0.494322722106293 1 0.470453381538391 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773650 chr9:100773653 synonymous SNV . 0 24 hm5C_associated_SNPs_45108 0 0 1 0 1 ANP32B chr9:100773671 5'GT 100773671 Upstream 19bp
chr9 100773653 100773653 1 + C T UCEC 100773662 + 100773642 100773682 41 GATGAGGACGACGATGAAGTCAGTGAGGAGGTCAGTGCAGC GATGAGGACGATGATGAAGTCAGTGAGGAGGTCAGTGCAGC < 41bp 1 0.629578325719154 1 0.41373798251152 experiment 0.740843348561692 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773662 chr9:100773653 synonymous SNV . 0 12 hm5C_associated_SNPs_45109 0 0 1 0 1 ANP32B chr9:100773671 5'GT 100773671 Upstream 19bp
chr8 143783079 143783079 1 + G A UCEC 143783082 + 143783062 143783102 41 AACACTTTCGAGTGCCAGAACCCAAGGAGGTGCAAATGGAC AACACTTTCGAGTGCCAAAACCCAAGGAGGTGCAAATGGAC < 41bp 1 0.50561520172399 1 0.366663098335266 experiment 0.98876959655202 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LY6K ENSG00000160886 CDS Human protein_coding chr8:143783082 chr8:143783079 synonymous SNV . 0 18 hm5C_associated_SNPs_45110 0 0 0 0 2 LY6K chr8:143783018 3'AG 143783018 Downstream 62bp
chr8 143783079 143783079 1 + G A UCEC 143783082 + 143783062 143783102 41 AACACTTTCGAGTGCCAGAACCCAAGGAGGTGCAAATGGAC AACACTTTCGAGTGCCAAAACCCAAGGAGGTGCAAATGGAC < 41bp 1 0.50561520172399 1 0.366663098335266 experiment 0.98876959655202 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LY6K ENSG00000160886 CDS Human protein_coding chr8:143783082 chr8:143783079 synonymous SNV . 0 18 hm5C_associated_SNPs_45110 0 0 0 0 2 LY6K chr8:143783131 5'GT 143783131 Upstream 53bp
chrX 150156314 150156314 1 + G A UCEC 150156311 + 150156291 150156331 41 AAAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGG AAAGGGTCCTGCTAAAGTTGCCCAGAAAAAGGTGGAAGAGG < 41bp 1 0.260235474288555 1 0.114947736263275 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156311 chrX:150156314 nonsynonymous SNV 0.969 1 24 hm5C_associated_SNPs_45111 0 0 1 0 1 HMGB3 chrX:150156250 3'AG 150156250 Downstream 65bp
chrX 150156314 150156314 1 + G A UCEC 150156312 + 150156292 150156332 41 AAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGA AAGGGTCCTGCTAAAGTTGCCCAGAAAAAGGTGGAAGAGGA < 41bp 1 0.532231260596023 1 0.424913257360458 experiment 0.935537478807954 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156312 chrX:150156314 nonsynonymous SNV 0.969 1 23 hm5C_associated_SNPs_45112 0 0 1 0 1 HMGB3 chrX:150156250 3'AG 150156250 Downstream 65bp
chrX 150156314 150156314 1 + G A UCEC 150156313 + 150156293 150156333 41 AGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGAA AGGGTCCTGCTAAAGTTGCCCAGAAAAAGGTGGAAGAGGAA < 41bp 1 0.633665540186171 1 0.561741173267365 experiment 0.732668919627658 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156313 chrX:150156314 nonsynonymous SNV 0.969 1 22 hm5C_associated_SNPs_45113 0 0 1 0 1 HMGB3 chrX:150156250 3'AG 150156250 Downstream 65bp
chrX 152959698 152959698 1 + C A UCEC 152959707 + 152959687 152959727 41 CTCTGCTTTGTCATCGATCTCTCCATGGTGACTGATGTGAG CTCTGCTTTGTAATCGATCTCTCCATGGTGACTGATGTGAG < 41bp 1 0.742337380096665 1 0.947188556194305 experiment 0.515325239806669 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959707 chrX:152959698 synonymous SNV . 0 12 hm5C_associated_SNPs_45114 0 0 1 4 1 SLC6A8 chrX:152959722 5'GT 152959722 Upstream 25bp
chrX 152959698 152959698 1 + C A UCEC 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG AATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG < 41bp 1 0.338382523163474 1 0.118282735347748 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959698 synonymous SNV . 0 1 hm5C_associated_SNPs_45115 0 0 1 4 1 SLC6A8 chrX:152959722 5'GT 152959722 Upstream 25bp
chr22 26242235 26242235 1 + G T UCEC 26242222 + 26242202 26242242 41 TGCCGCGGTGAGGAGGAAAGCCCCGTGCTCCCAGATCAAGC TGCCGCGGTGAGGAGGAAAGCCCCGTGCTCCCATATCAAGC < 41bp 1 0.3258799312922 1 0.253150582313538 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26242222 chr22:26242235 nonsynonymous SNV 0.991 4 34 hm5C_associated_SNPs_45117 0 0 0 0 1 MYO18B chr22:26242250 5'GT 26242250 Upstream 16bp
chr10 128768989 128768989 1 + G T UCEC 128768993 + 128768973 128769013 41 TAACTATGATGCCAGAGGAGCGGATGAACTTTCTTTACAGA TAACTATGATGCCAGATGAGCGGATGAACTTTCTTTACAGA < 41bp 1 0.0943466670659946 1 0.43416365981102 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:128768993 chr10:128768989 stopgain 0.984 1 17 hm5C_associated_SNPs_45118 0 0 1 0 2 DOCK1 chr10:128768966 3'AG 128768966 Downstream 24bp
chr10 128768989 128768989 1 + G T UCEC 128768993 + 128768973 128769013 41 TAACTATGATGCCAGAGGAGCGGATGAACTTTCTTTACAGA TAACTATGATGCCAGATGAGCGGATGAACTTTCTTTACAGA < 41bp 1 0.0943466670659946 1 0.43416365981102 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:128768993 chr10:128768989 stopgain 0.984 1 17 hm5C_associated_SNPs_45118 0 0 1 0 2 DOCK1 chr10:128769049 5'GT 128769049 Upstream 61bp
chrX 107834435 107834435 1 + G A UCEC 107834422 + 107834402 107834442 41 AGCCTGGGGCTCCTGGGCTTCCAGGGCCTCCTGGCCCTGCT AGCCTGGGGCTCCTGGGCTTCCAGGGCCTCCTGACCCTGCT < 41bp 1 0.601008755669592 1 0.898171782493591 experiment 0.797982488660815 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107834422 chrX:107834435 nonsynonymous SNV 0.976 4 34 hm5C_associated_SNPs_45122 0 0 1 0 1 COL4A5 chrX:107834461 5'GT 107834461 Upstream 27bp
chr19 4222732 4222732 1 + C T UCEC 4222718 + 4222698 4222738 41 TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCGCCACC TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTTGCCACC < 41bp 1 0.287255370748764 1 0.367413818836212 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4222718 chr19:4222732 synonymous SNV . 0 35 hm5C_associated_SNPs_45123 0 0 0 0 2 ANKRD24 chr19:4222667 3'AG 4222667 Downstream 66bp
chr19 4222732 4222732 1 + C T UCEC 4222718 + 4222698 4222738 41 TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCGCCACC TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTTGCCACC < 41bp 1 0.287255370748764 1 0.367413818836212 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4222718 chr19:4222732 synonymous SNV . 0 35 hm5C_associated_SNPs_45123 0 0 0 0 2 ANKRD24 chr19:4222792 5'GT 4222792 Upstream 61bp
chr3 33877683 33877683 1 + G T UCEC 33877665 + 33877645 33877685 41 ATGACTTCATTTATCATGATCGAGTTCCAGACCTTAAAGAT ATGACTTCATTTATCATGATCGAGTTCCAGACCTTAAATAT < 41bp 1 0.442889411472347 1 0.292905628681183 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33877665 chr3:33877683 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_45124 0 0 1 0 1 PDCD6IP chr3:33877758 5'GT 33877758 Upstream 76bp
chr17 38609285 38609285 1 + C T UCEC 38609301 + 38609281 38609321 41 AGCGCCCATGACCGCAGGTGCCTGCAGAAGCACTTCGCCAA AGCGTCCATGACCGCAGGTGCCTGCAGAAGCACTTCGCCAA < 41bp 1 0.106701824762589 1 0.0854181051254272 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38609301 chr17:38609285 nonsynonymous SNV 0.961 0 5 hm5C_associated_SNPs_45125 0 0 1 0 1 IGFBP4 chr17:38609237 3'AG 38609237 Downstream 49bp
chrX 56592088 56592088 1 + C A UCEC 56592076 + 56592056 56592096 41 CAACAACTGGAACAGCTCAACGCAATGGGGTTCTTAAACCG CAACAACTGGAACAGCTCAACGCAATGGGGTTATTAAACCG < 41bp 1 0.759465735556675 1 0.751291036605835 experiment 0.481068528886651 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBQLN2 ENSG00000188021 CDS Human protein_coding chrX:56592076 chrX:56592088 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_45126 0 0 1 0 1 UBQLN2 chrX:56592002 3'AG 56592002 Downstream 87bp
chr1 156761569 156761569 1 + C A UCEC 156761563 + 156761543 156761583 41 CAGGAAATTGCCCCAGATGCCTCCTTCATCGATGACGAAGC CAGGAAATTGCCCCAGATGCCTCCTTAATCGATGACGAAGC < 41bp 1 0.527102087301178 1 0.208423048257828 experiment 0.945795825397644 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156761563 chr1:156761569 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_45127 0 0 1 0 2 PRCC chr1:156761489 3'AG 156761489 Downstream 81bp
chr1 156761569 156761569 1 + C A UCEC 156761563 + 156761543 156761583 41 CAGGAAATTGCCCCAGATGCCTCCTTCATCGATGACGAAGC CAGGAAATTGCCCCAGATGCCTCCTTAATCGATGACGAAGC < 41bp 1 0.527102087301178 1 0.208423048257828 experiment 0.945795825397644 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156761563 chr1:156761569 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_45127 0 0 1 0 2 PRCC chr1:156761584 5'GT 156761584 Upstream 16bp
chr17 78082367 78082367 1 + C T UCEC 78082382 + 78082362 78082402 41 ACCCGCCAGGTGGTGGAGAACATGACCAGGGCCCACTTCCC ACCCGTCAGGTGGTGGAGAACATGACCAGGGCCCACTTCCC < 41bp 1 0.784118475637144 1 0.12018895149231 experiment 0.431763048725712 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082382 chr17:78082367 synonymous SNV . 0 6 hm5C_associated_SNPs_45128 0 0 1 0 2 GAA chr17:78082288 3'AG 78082288 Downstream 80bp
chr17 78082367 78082367 1 + C T UCEC 78082382 + 78082362 78082402 41 ACCCGCCAGGTGGTGGAGAACATGACCAGGGCCCACTTCCC ACCCGTCAGGTGGTGGAGAACATGACCAGGGCCCACTTCCC < 41bp 1 0.784118475637144 1 0.12018895149231 experiment 0.431763048725712 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082382 chr17:78082367 synonymous SNV . 0 6 hm5C_associated_SNPs_45128 0 0 1 0 2 GAA chr17:78082406 5'GT 78082406 Upstream 40bp
chr18 48446853 48446853 1 + C T UCEC 48446838 + 48446818 48446858 41 GTTTTTAGATATGGCCGGAACACACTCATTCAGTTCGAAGA GTTTTTAGATATGGCCGGAACACACTCATTCAGTTTGAAGA < 41bp 1 0.21413220524939 1 0.129078924655914 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ME2 ENSG00000082212 CDS Human protein_coding chr18:48446838 chr18:48446853 synonymous SNV . 0 36 hm5C_associated_SNPs_45129 0 0 1 0 2 ME2 chr18:48446826 3'AG 48446826 Downstream 28bp
chr18 48446853 48446853 1 + C T UCEC 48446838 + 48446818 48446858 41 GTTTTTAGATATGGCCGGAACACACTCATTCAGTTCGAAGA GTTTTTAGATATGGCCGGAACACACTCATTCAGTTTGAAGA < 41bp 1 0.21413220524939 1 0.129078924655914 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ME2 ENSG00000082212 CDS Human protein_coding chr18:48446838 chr18:48446853 synonymous SNV . 0 36 hm5C_associated_SNPs_45129 0 0 1 0 2 ME2 chr18:48446935 5'GT 48446935 Upstream 83bp
chr2 86360545 86360545 1 + C A UCEC 86360529 + 86360509 86360549 41 AAGCATTGGATGTGGCCAATCGGCTAGAAGTGATTCCTAAA AAGCATTGGATGTGGCCAATCGGCTAGAAGTGATTCATAAA < 41bp 1 0.522396516959228 1 0.699435174465179 experiment 0.955206966081543 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86360529 chr2:86360545 nonsynonymous SNV 0.959 4 37 hm5C_associated_SNPs_45130 0 0 1 0 2 PTCD3 chr2:86360469 3'AG 86360469 Downstream 77bp
chr2 86360545 86360545 1 + C A UCEC 86360529 + 86360509 86360549 41 AAGCATTGGATGTGGCCAATCGGCTAGAAGTGATTCCTAAA AAGCATTGGATGTGGCCAATCGGCTAGAAGTGATTCATAAA < 41bp 1 0.522396516959228 1 0.699435174465179 experiment 0.955206966081543 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86360529 chr2:86360545 nonsynonymous SNV 0.959 4 37 hm5C_associated_SNPs_45130 0 0 1 0 2 PTCD3 chr2:86360559 5'GT 86360559 Upstream 15bp
chr1 44878336 44878336 1 + C T UCEC 44878350 + 44878330 44878370 41 TGCTGTCTCTGGCCTCATTTCTGATCGGGAAGCCTCATCTA TGCTGTTTCTGGCCTCATTTCTGATCGGGAAGCCTCATCTA < 41bp 1 0.456442324006191 1 0.462544798851013 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878350 chr1:44878336 synonymous SNV . 0 7 hm5C_associated_SNPs_45131 0 0 1 0 1 RNF220 chr1:44878394 5'GT 44878394 Upstream 59bp
chr1 162536047 162536047 1 + G T UCEC 162536030 + 162536010 162536050 41 AGGCCATTGAAGGTTTTAACCAGTCTTCTCACCAAAAGAAT AGGCCATTGAAGGTTTTAACCAGTCTTCTCACCAAAATAAT < 41bp 1 0.346168744825191 1 0.243906199932098 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UAP1 ENSG00000117143 CDS Human protein_coding chr1:162536030 chr1:162536047 nonsynonymous SNV 0.992 1 38 hm5C_associated_SNPs_45132 0 0 1 0 1 UAP1 chr1:162536138 5'GT 162536138 Upstream 92bp
chr11 94533464 94533464 1 + T C UCEC 94533474 + 94533454 94533494 41 ACCCCCTGAGTATGGGGTAACGAGGTGATTATCAACTGCAG ACCCCCTGAGCATGGGGTAACGAGGTGATTATCAACTGCAG < 41bp 1 0.666180019198165 1 0.744880199432373 experiment 0.66763996160367 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94533474 chr11:94533464 nonsynonymous SNV 0.939 3 11 hm5C_associated_SNPs_45134 0 0 1 0 1 AMOTL1 chr11:94533477 5'GT 94533477 Upstream 14bp
chr11 17393602 17393602 1 + A C UCEC 17393604 + 17393584 17393624 41 CTCTCAAGTGCATTCTGAAACACTGGAACTCCTTTGACACT CTCTCAAGTGCATTCTGACACACTGGAACTCCTTTGACACT < 41bp 1 0.291377888615493 1 0.0541815757751465 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NCR3LG1 ENSG00000188211 CDS Human protein_coding chr11:17393604 chr11:17393602 nonsynonymous SNV 0.741 1 19 hm5C_associated_SNPs_45135 0 0 1 0 1 NCR3LG1 chr11:17393553 3'AG 17393553 Downstream 50bp
chr1 27631567 27631567 1 + C T UCEC 27631562 + 27631542 27631582 41 GGGAAAAGGAGACCACCAACCTGGTCCGTGTGCTCCAAGGG GGGAAAAGGAGACCACCAACCTGGTTCGTGTGCTCCAAGGG < 41bp 1 0.713678730205066 1 0.731958270072937 experiment 0.572642539589869 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27631562 chr1:27631567 nonsynonymous SNV . 0 26 hm5C_associated_SNPs_45138 0 0 1 0 2 WDTC1 chr1:27631492 3'AG 27631492 Downstream 76bp
chr1 27631567 27631567 1 + C T UCEC 27631562 + 27631542 27631582 41 GGGAAAAGGAGACCACCAACCTGGTCCGTGTGCTCCAAGGG GGGAAAAGGAGACCACCAACCTGGTTCGTGTGCTCCAAGGG < 41bp 1 0.713678730205066 1 0.731958270072937 experiment 0.572642539589869 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27631562 chr1:27631567 nonsynonymous SNV . 0 26 hm5C_associated_SNPs_45138 0 0 1 0 2 WDTC1 chr1:27631550 3'AG 27631550 Downstream 18bp
chr9 35389882 35389882 1 + C T UCEC 35389874 + 35389854 35389894 41 ACCTCCAGAGGAACAAGGGCCCAGCATTCGGAACCTGGATT ACCTCCAGAGGAACAAGGGCCCAGCATTTGGAACCTGGATT < 41bp 1 0.0708260395625366 1 0.172866702079773 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UNC13B ENSG00000198722 CDS Human protein_coding chr9:35389874 chr9:35389882 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_45139 0 0 1 0 2 UNC13B chr9:35389843 3'AG 35389843 Downstream 40bp
chr9 35389882 35389882 1 + C T UCEC 35389874 + 35389854 35389894 41 ACCTCCAGAGGAACAAGGGCCCAGCATTCGGAACCTGGATT ACCTCCAGAGGAACAAGGGCCCAGCATTTGGAACCTGGATT < 41bp 1 0.0708260395625366 1 0.172866702079773 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UNC13B ENSG00000198722 CDS Human protein_coding chr9:35389874 chr9:35389882 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_45139 0 0 1 0 2 UNC13B chr9:35389970 5'GT 35389970 Upstream 89bp
chr6 21198305 21198305 1 + T G UCEC 21198317 + 21198297 21198337 41 TCCAAGTTTTATGTTGCACACAATCAATTCTATGAGCAGGT TCCAAGTTGTATGTTGCACACAATCAATTCTATGAGCAGGT < 41bp 1 0.0488958664331609 1 0.0654658079147339 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDKAL1 ENSG00000145996 CDS Human protein_coding chr6:21198317 chr6:21198305 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_45140 0 0 0 0 2 CDKAL1 chr6:21198252 3'AG 21198252 Downstream 54bp
chr6 21198305 21198305 1 + T G UCEC 21198317 + 21198297 21198337 41 TCCAAGTTTTATGTTGCACACAATCAATTCTATGAGCAGGT TCCAAGTTGTATGTTGCACACAATCAATTCTATGAGCAGGT < 41bp 1 0.0488958664331609 1 0.0654658079147339 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDKAL1 ENSG00000145996 CDS Human protein_coding chr6:21198317 chr6:21198305 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_45140 0 0 0 0 2 CDKAL1 chr6:21198335 5'GT 21198335 Upstream 31bp
chr17 28499611 28499611 1 + A C UCEC 28499607 + 28499587 28499627 41 GAAGCTGCTAAGAAGCAGGCCATGAAACAGGTAAGGTAGAA GAAGCTGCTAAGAAGCAGGCCATGCAACAGGTAAGGTAGAA < 41bp 1 0.334381050485421 1 0.0683208405971527 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NSRP1 ENSG00000126653 CDS Human protein_coding chr17:28499607 chr17:28499611 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_45141 0 0 1 0 2 NSRP1 chr17:28499560 3'AG 28499560 Downstream 52bp
chr17 28499611 28499611 1 + A C UCEC 28499607 + 28499587 28499627 41 GAAGCTGCTAAGAAGCAGGCCATGAAACAGGTAAGGTAGAA GAAGCTGCTAAGAAGCAGGCCATGCAACAGGTAAGGTAGAA < 41bp 1 0.334381050485421 1 0.0683208405971527 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NSRP1 ENSG00000126653 CDS Human protein_coding chr17:28499607 chr17:28499611 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_45141 0 0 1 0 2 NSRP1 chr17:28499616 5'GT 28499616 Upstream 6bp
chr18 641413 641413 1 + C A UCEC 641423 + 641403 641443 41 TGGCCAGATTCTCCAGATGACCCGGAAGCACTTGGAGGACA TGGCCAGATTATCCAGATGACCCGGAAGCACTTGGAGGACA < 41bp 1 0.67212959314716 1 0.0502934455871582 experiment 0.65574081370568 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CLUL1 ENSG00000079101 CDS Human protein_coding chr18:641423 chr18:641413 nonsynonymous SNV 0.574 1 11 hm5C_associated_SNPs_45142 0 0 0 0 1 CLUL1 chr18:641327 3'AG 641327 Downstream 87bp
chr10 104157768 104157768 1 + C A UCEC 104157753 + 104157733 104157773 41 CATAGAATCTCCGGGGGCATCAAACCTGAAGATTTCTCGAA CATAGAATCTCCGGGGGCATCAAACCTGAAGATTTATCGAA < 41bp 1 0.206365211351622 1 0.438122481107712 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104157753 chr10:104157768 nonsynonymous SNV 0.894 4 36 hm5C_associated_SNPs_45143 0 0 1 0 2 NFKB2 chr10:104157738 3'AG 104157738 Downstream 31bp
chr10 104157768 104157768 1 + C A UCEC 104157753 + 104157733 104157773 41 CATAGAATCTCCGGGGGCATCAAACCTGAAGATTTCTCGAA CATAGAATCTCCGGGGGCATCAAACCTGAAGATTTATCGAA < 41bp 1 0.206365211351622 1 0.438122481107712 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104157753 chr10:104157768 nonsynonymous SNV 0.894 4 36 hm5C_associated_SNPs_45143 0 0 1 0 2 NFKB2 chr10:104157842 5'GT 104157842 Upstream 75bp
chrX 123229236 123229236 1 + C T UCEC 123229250 + 123229230 123229270 41 AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT AAAGAATAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT < 41bp 1 0.45243727507696 1 0.459439784288406 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123229250 chrX:123229236 synonymous SNV . 0 7 hm5C_associated_SNPs_45148 0 0 1 0 2 STAG2 chrX:123229222 3'AG 123229222 Downstream 15bp
chrX 123229236 123229236 1 + C T UCEC 123229250 + 123229230 123229270 41 AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT AAAGAATAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT < 41bp 1 0.45243727507696 1 0.459439784288406 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123229250 chrX:123229236 synonymous SNV . 0 7 hm5C_associated_SNPs_45148 0 0 1 0 2 STAG2 chrX:123229299 5'GT 123229299 Upstream 64bp
chr11 61725716 61725716 1 + C T UCEC 61725725 + 61725705 61725745 41 GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGCAGTT GAGCTGGACCTTGTTGTGCCCGTCTTCACGTTCCTGCAGTT < 41bp 1 0.194979537838536 1 0.140045523643494 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61725725 chr11:61725716 synonymous SNV . 0 12 hm5C_associated_SNPs_45151 3 0 0 0 2 BEST1 chr11:61725618 3'AG 61725618 Downstream 99bp
chr11 61725716 61725716 1 + C T UCEC 61725725 + 61725705 61725745 41 GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGCAGTT GAGCTGGACCTTGTTGTGCCCGTCTTCACGTTCCTGCAGTT < 41bp 1 0.194979537838536 1 0.140045523643494 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61725725 chr11:61725716 synonymous SNV . 0 12 hm5C_associated_SNPs_45151 3 0 0 0 2 BEST1 chr11:61725770 5'GT 61725770 Upstream 55bp
chr19 36128132 36128132 1 + G A UCEC 36128142 + 36128122 36128162 41 GCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCCAAGGTGAT GCCTTCAGCCACTTCCCATCCTTCCTTAAGGCCAAGGTGAT < 41bp 1 0.165758593523539 1 0.515446662902832 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36128142 chr19:36128132 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_45152 0 0 1 0 1 RBM42 chr19:36128060 3'AG 36128060 Downstream 73bp
chr3 179424786 179424786 1 + C T UCEC 179424778 + 179424758 179424798 41 TCTCCATACAGAAAGCAGGACCCAGACACGTGGGAAAATGA TCTCCATACAGAAAGCAGGACCCAGACATGTGGGAAAATGA < 41bp 1 0.0472680250049838 1 0.0818475484848022 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USP13 ENSG00000058056 CDS Human protein_coding chr3:179424778 chr3:179424786 nonsynonymous SNV 0.996 2 29 hm5C_associated_SNPs_45159 0 0 0 0 2 USP13 chr3:179424722 3'AG 179424722 Downstream 65bp
chr3 179424786 179424786 1 + C T UCEC 179424778 + 179424758 179424798 41 TCTCCATACAGAAAGCAGGACCCAGACACGTGGGAAAATGA TCTCCATACAGAAAGCAGGACCCAGACATGTGGGAAAATGA < 41bp 1 0.0472680250049838 1 0.0818475484848022 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USP13 ENSG00000058056 CDS Human protein_coding chr3:179424778 chr3:179424786 nonsynonymous SNV 0.996 2 29 hm5C_associated_SNPs_45159 0 0 0 0 2 USP13 chr3:179424864 5'GT 179424864 Upstream 79bp
chr12 132237681 132237681 1 + C T UCEC 132237672 + 132237652 132237692 41 CAATGTGTCTCCACAGCGACCGTGGCAGCCATGTATTACAG CAATGTGTCTCCACAGCGACCGTGGCAGCTATGTATTACAG < 41bp 1 0.35556011764302 1 0.324491739273071 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132237672 chr12:132237681 synonymous SNV . 0 30 hm5C_associated_SNPs_45161 0 0 1 0 1 SFSWAP chr12:132237668 3'AG 132237668 Downstream 14bp
chr5 72189510 72189510 1 + A G UCEC 72189491 + 72189471 72189511 41 CTTTTGCCCTGTTAGGTGACCTCACAAAAGCTTGCTTTCAG CTTTTGCCCTGTTAGGTGACCTCACAAAAGCTTGCTTTCGG < 41bp 1 0.215904657449118 1 0.113589257001877 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72189491 chr5:72189510 nonsynonymous SNV 0.999 1 40 hm5C_associated_SNPs_45162 0 0 1 0 2 TNPO1 chr5:72189443 3'AG 72189443 Downstream 68bp
chr5 72189510 72189510 1 + A G UCEC 72189491 + 72189471 72189511 41 CTTTTGCCCTGTTAGGTGACCTCACAAAAGCTTGCTTTCAG CTTTTGCCCTGTTAGGTGACCTCACAAAAGCTTGCTTTCGG < 41bp 1 0.215904657449118 1 0.113589257001877 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72189491 chr5:72189510 nonsynonymous SNV 0.999 1 40 hm5C_associated_SNPs_45162 0 0 1 0 2 TNPO1 chr5:72189530 5'GT 72189530 Upstream 21bp
chr2 113260567 113260567 1 + T G UCEC 113260557 + 113260537 113260577 41 GGGTGTGCTTCGGACTGCTTCAGAACCATATCATGTTGATA GGGTGTGCTTCGGACTGCTTCAGAACCATAGCATGTTGATA < 41bp 1 0.524367120529687 1 0.521205544471741 experiment 0.951265758940626 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113260557 chr2:113260567 stopgain 0.999 1 31 hm5C_associated_SNPs_45164 0 0 1 5 1 TTL chr2:113260489 3'AG 113260489 Downstream 79bp
chr13 113485783 113485783 1 + A G UCEC 113485767 + 113485747 113485787 41 AGGAGTGCTGCATCGAAGGCCATGTCTACGTGCCCCACGTC AGGAGTGCTGCATCGAAGGCCATGTCTACGTGCCCCGCGTC < 41bp 1 0.166343826152762 1 0.618438303470612 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP11A ENSG00000068650 CDS Human protein_coding chr13:113485767 chr13:113485783 nonsynonymous SNV 0.143 2 37 hm5C_associated_SNPs_45165 0 0 0 0 1 ATP11A chr13:113485689 3'AG 113485689 Downstream 95bp
chr2 113243551 113243551 1 + G A UCEC 113243539 + 113243519 113243559 41 GGTGAATTACTACAGGGGTGCTGACAAACTGTGTCGCAAAG GGTGAATTACTACAGGGGTGCTGACAAACTGTATCGCAAAG < 41bp 1 0.237872091347248 1 0.205895036458969 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113243539 chr2:113243551 nonsynonymous SNV 0.998 4 33 hm5C_associated_SNPs_45166 0 0 1 0 2 TTL chr2:113243494 3'AG 113243494 Downstream 58bp
chr2 113243551 113243551 1 + G A UCEC 113243539 + 113243519 113243559 41 GGTGAATTACTACAGGGGTGCTGACAAACTGTGTCGCAAAG GGTGAATTACTACAGGGGTGCTGACAAACTGTATCGCAAAG < 41bp 1 0.237872091347248 1 0.205895036458969 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113243539 chr2:113243551 nonsynonymous SNV 0.998 4 33 hm5C_associated_SNPs_45166 0 0 1 0 2 TTL chr2:113243572 5'GT 113243572 Upstream 22bp
chr18 21478720 21478720 1 + C T UCEC 21478705 + 21478685 21478725 41 TTGTGTTTTGTTTCCAGAATCAGTTGCTCAACTACCGTTCT TTGTGTTTTGTTTCCAGAATCAGTTGCTCAACTACTGTTCT < 41bp 1 0.0482375652794778 1 0.155308812856674 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21478705 chr18:21478720 nonsynonymous SNV 0.857 3 36 hm5C_associated_SNPs_45167 0 0 0 0 2 LAMA3 chr18:21478702 3'AG 21478702 Downstream 19bp
chr18 21478720 21478720 1 + C T UCEC 21478705 + 21478685 21478725 41 TTGTGTTTTGTTTCCAGAATCAGTTGCTCAACTACCGTTCT TTGTGTTTTGTTTCCAGAATCAGTTGCTCAACTACTGTTCT < 41bp 1 0.0482375652794778 1 0.155308812856674 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21478705 chr18:21478720 nonsynonymous SNV 0.857 3 36 hm5C_associated_SNPs_45167 0 0 0 0 2 LAMA3 chr18:21478812 5'GT 21478812 Upstream 93bp
chr16 630881 630881 1 + G A UCEC 630864 + 630844 630884 41 CTCCTCTGCCACAGCTCCGGCTCCTGGTGGTCGCCGTGCAG CTCCTCTGCCACAGCTCCGGCTCCTGGTGGTCGCCGTACAG < 41bp 1 0.269217264248568 1 0.274190366268158 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIGQ ENSG00000007541 CDS Human protein_coding chr16:630864 chr16:630881 synonymous SNV . 0 38 hm5C_associated_SNPs_45168 0 0 1 0 2 PIGQ chr16:630858 3'AG 630858 Downstream 24bp
chr16 630881 630881 1 + G A UCEC 630864 + 630844 630884 41 CTCCTCTGCCACAGCTCCGGCTCCTGGTGGTCGCCGTGCAG CTCCTCTGCCACAGCTCCGGCTCCTGGTGGTCGCCGTACAG < 41bp 1 0.269217264248568 1 0.274190366268158 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIGQ ENSG00000007541 CDS Human protein_coding chr16:630864 chr16:630881 synonymous SNV . 0 38 hm5C_associated_SNPs_45168 0 0 1 0 2 PIGQ chr16:630972 5'GT 630972 Upstream 92bp
chr7 87530115 87530115 1 + A G UCEC 87530114 + 87530094 87530134 41 CGATAAGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAG CGATAAGTATGGTGGAACCTCGATTCAACTCCAGTTGAAAG < 41bp 1 0.178896635111943 1 0.291621267795563 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530114 chr7:87530115 synonymous SNV . 0 22 hm5C_associated_SNPs_45169 0 0 1 0 2 DBF4 chr7:87530079 3'AG 87530079 Downstream 37bp
chr7 87530115 87530115 1 + A G UCEC 87530114 + 87530094 87530134 41 CGATAAGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAG CGATAAGTATGGTGGAACCTCGATTCAACTCCAGTTGAAAG < 41bp 1 0.178896635111943 1 0.291621267795563 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530114 chr7:87530115 synonymous SNV . 0 22 hm5C_associated_SNPs_45169 0 0 1 0 2 DBF4 chr7:87530193 5'GT 87530193 Upstream 79bp
chr7 87530115 87530115 1 + A G UCEC 87530119 + 87530099 87530139 41 AGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAGAGAAG AGTATGGTGGAACCTCGATTCAACTCCAGTTGAAAGAGAAG < 41bp 1 0.243933201711609 1 0.446159332990646 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530119 chr7:87530115 synonymous SNV . 0 17 hm5C_associated_SNPs_45170 0 0 1 0 2 DBF4 chr7:87530079 3'AG 87530079 Downstream 37bp
chr7 87530115 87530115 1 + A G UCEC 87530119 + 87530099 87530139 41 AGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAGAGAAG AGTATGGTGGAACCTCGATTCAACTCCAGTTGAAAGAGAAG < 41bp 1 0.243933201711609 1 0.446159332990646 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530119 chr7:87530115 synonymous SNV . 0 17 hm5C_associated_SNPs_45170 0 0 1 0 2 DBF4 chr7:87530193 5'GT 87530193 Upstream 79bp
chr7 87530115 87530115 1 + A G UCEC 87530124 + 87530104 87530144 41 GGTGGAACCTCAATTCAACTCCAGTTGAAAGAGAAGAAGAA GGTGGAACCTCGATTCAACTCCAGTTGAAAGAGAAGAAGAA < 41bp 1 0.385584096382655 1 0.651295602321625 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530124 chr7:87530115 synonymous SNV . 0 12 hm5C_associated_SNPs_45171 0 0 1 0 2 DBF4 chr7:87530079 3'AG 87530079 Downstream 37bp
chr7 87530115 87530115 1 + A G UCEC 87530124 + 87530104 87530144 41 GGTGGAACCTCAATTCAACTCCAGTTGAAAGAGAAGAAGAA GGTGGAACCTCGATTCAACTCCAGTTGAAAGAGAAGAAGAA < 41bp 1 0.385584096382655 1 0.651295602321625 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530124 chr7:87530115 synonymous SNV . 0 12 hm5C_associated_SNPs_45171 0 0 1 0 2 DBF4 chr7:87530193 5'GT 87530193 Upstream 79bp
chr3 38294315 38294315 1 + G A UCEC 38294312 + 38294292 38294332 41 TTTGTTTGGTTCTTAGGCATCTGGTGTCGAAGGCTCAGATA TTTGTTTGGTTCTTAGGCATCTGATGTCGAAGGCTCAGATA < 41bp 1 0.381579939342347 1 0.21157169342041 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OXSR1 ENSG00000172939 CDS Human protein_coding chr3:38294312 chr3:38294315 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_45172 0 0 1 0 1 OXSR1 chr3:38294308 3'AG 38294308 Downstream 8bp
chr19 46202123 46202123 1 + G A UCEC 46202126 + 46202106 46202146 41 CTACAGCCACTTCCCTCGCACGGTCCGCTGGTTCCATCGGC CTACAGCCACTTCCCTCACACGGTCCGCTGGTTCCATCGGC < 41bp 1 0.186664144792668 1 0.839542508125305 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control QPCTL ENSG00000011478 CDS Human protein_coding chr19:46202126 chr19:46202123 nonsynonymous SNV 0.066 0 18 hm5C_associated_SNPs_45173 0 0 1 0 2 QPCTL chr19:46202059 3'AG 46202059 Downstream 65bp
chr19 46202123 46202123 1 + G A UCEC 46202126 + 46202106 46202146 41 CTACAGCCACTTCCCTCGCACGGTCCGCTGGTTCCATCGGC CTACAGCCACTTCCCTCACACGGTCCGCTGGTTCCATCGGC < 41bp 1 0.186664144792668 1 0.839542508125305 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control QPCTL ENSG00000011478 CDS Human protein_coding chr19:46202126 chr19:46202123 nonsynonymous SNV 0.066 0 18 hm5C_associated_SNPs_45173 0 0 1 0 2 QPCTL chr19:46202158 5'GT 46202158 Upstream 36bp
chr5 56526790 56526790 1 + A G UCEC 56526784 + 56526764 56526804 41 GCTTTGATTCTGCTATTGGGCGTCCTAATGGAGGTAAAATT GCTTTGATTCTGCTATTGGGCGTCCTGATGGAGGTAAAATT < 41bp 1 0.201495431623147 1 0.0828137099742889 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56526784 chr5:56526790 nonsynonymous SNV 0.999 0 27 hm5C_associated_SNPs_45174 0 0 1 1 1 GPBP1 chr5:56526796 5'GT 56526796 Upstream 7bp
chr10 126505165 126505165 1 + T A UCEC 126505159 + 126505139 126505179 41 TTACAGAAATCCATAACCATCAGCCTTGTTCAAAACTTTTT TTACAGAAATCCATAACCATCAGCCTAGTTCAAAACTTTTT < 41bp 1 0.251728744629644 1 0.100771427154541 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126505159 chr10:126505165 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_45176 0 0 1 0 2 ABRAXAS2 chr10:126505145 3'AG 126505145 Downstream 21bp
chr10 126505165 126505165 1 + T A UCEC 126505159 + 126505139 126505179 41 TTACAGAAATCCATAACCATCAGCCTTGTTCAAAACTTTTT TTACAGAAATCCATAACCATCAGCCTAGTTCAAAACTTTTT < 41bp 1 0.251728744629644 1 0.100771427154541 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126505159 chr10:126505165 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_45176 0 0 1 0 2 ABRAXAS2 chr10:126505181 5'GT 126505181 Upstream 17bp
chr11 65402834 65402834 1 + C T UCEC 65402836 + 65402816 65402856 41 ACACGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGAT ACACGCCCTCCCTGCTGGTGCTGCGCCATGTCCTGGATGAT < 41bp 1 0.131238534530425 1 0.110754907131195 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402836 chr11:65402834 nonsynonymous SNV 0.992 4 19 hm5C_associated_SNPs_45177 0 0 1 0 1 PCNX3 chr11:65402919 5'GT 65402919 Upstream 86bp
chr11 65402834 65402834 1 + C T UCEC 65402839 + 65402819 65402859 41 CGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCC CGCCCTCCCTGCTGGTGCTGCGCCATGTCCTGGATGATGCC < 41bp 1 0.281152848947103 1 0.810563921928406 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402839 chr11:65402834 nonsynonymous SNV 0.992 4 16 hm5C_associated_SNPs_45178 0 0 1 0 1 PCNX3 chr11:65402919 5'GT 65402919 Upstream 86bp
chr11 65402834 65402834 1 + C T UCEC 65402841 + 65402821 65402861 41 CCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCCTC CCCTCCCTGCTGGTGCTGCGCCATGTCCTGGATGATGCCTC < 41bp 1 0.0633037087052576 1 0.0900659263134003 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402841 chr11:65402834 nonsynonymous SNV 0.992 4 14 hm5C_associated_SNPs_45179 0 0 1 0 1 PCNX3 chr11:65402919 5'GT 65402919 Upstream 86bp
chr11 65402834 65402834 1 + C T UCEC 65402842 + 65402822 65402862 41 CCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCCTCC CCTCCCTGCTGGTGCTGCGCCATGTCCTGGATGATGCCTCC < 41bp 1 0.0898013488986853 1 0.602384805679321 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402842 chr11:65402834 nonsynonymous SNV 0.992 4 13 hm5C_associated_SNPs_45180 0 0 1 0 1 PCNX3 chr11:65402919 5'GT 65402919 Upstream 86bp
chr10 81841643 81841643 1 + C T UCEC 81841623 + 81841603 81841643 41 GTCTTCTGGCCTCAGAGTATCCCTTATCAGAACCTTGGGCC GTCTTCTGGCCTCAGAGTATCCCTTATCAGAACCTTGGGCT < 41bp 1 0.286904967887729 1 0.0259994566440582 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM254 ENSG00000133678 CDS Human protein_coding chr10:81841623 chr10:81841643 nonsynonymous SNV 0.554 0 41 hm5C_associated_SNPs_45181 0 0 1 0 2 TMEM254 chr10:81841597 3'AG 81841597 Downstream 47bp
chr10 81841643 81841643 1 + C T UCEC 81841623 + 81841603 81841643 41 GTCTTCTGGCCTCAGAGTATCCCTTATCAGAACCTTGGGCC GTCTTCTGGCCTCAGAGTATCCCTTATCAGAACCTTGGGCT < 41bp 1 0.286904967887729 1 0.0259994566440582 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM254 ENSG00000133678 CDS Human protein_coding chr10:81841623 chr10:81841643 nonsynonymous SNV 0.554 0 41 hm5C_associated_SNPs_45181 0 0 1 0 2 TMEM254 chr10:81841700 5'GT 81841700 Upstream 58bp
chrX 41200757 41200757 1 + T A UCEC 41200758 + 41200738 41200778 41 TTTCTACGATAAAGACAGTTCAGGGTGGAGTTCTAGCAAAG TTTCTACGATAAAGACAGTACAGGGTGGAGTTCTAGCAAAG < 41bp 1 0.68359942499887 1 0.62121057510376 experiment 0.63280115000226 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41200758 chrX:41200757 nonsynonymous SNV 1.000 0 20 hm5C_associated_SNPs_45182 0 0 1 0 1 DDX3X chrX:41200737 3'AG 41200737 Downstream 21bp
chrX 41200757 41200757 1 + T A UCEC 41200770 + 41200750 41200790 41 AGACAGTTCAGGGTGGAGTTCTAGCAAAGATAAGGATGCGT AGACAGTACAGGGTGGAGTTCTAGCAAAGATAAGGATGCGT < 41bp 1 0.314485236755084 1 0.205929577350616 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41200770 chrX:41200757 nonsynonymous SNV 1.000 0 8 hm5C_associated_SNPs_45183 0 0 1 0 1 DDX3X chrX:41200737 3'AG 41200737 Downstream 21bp
chr1 87805791 87805791 1 + A G UCEC 87805775 + 87805755 87805795 41 ATCGCCTGGTCCCGGGAGATCGGTTTCACTACATCAATGGC ATCGCCTGGTCCCGGGAGATCGGTTTCACTACATCAGTGGC < 41bp 1 0.416545483431495 1 0.442000269889832 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMO4 ENSG00000143013 CDS Human protein_coding chr1:87805775 chr1:87805791 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_45184 0 0 1 0 1 LMO4 chr1:87805885 5'GT 87805885 Upstream 95bp
chr11 76114892 76114892 1 + G T UCEC 76114912 + 76114892 76114932 41 GGGCAGGAGAAGATGGATGTCACAGCTCAAGAAGCGAGAAC TGGCAGGAGAAGATGGATGTCACAGCTCAAGAAGCGAGAAC < 41bp 1 0.49904104208329 1 0.294386386871338 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LOC100506127 ENSG00000179240 CDS Human protein_coding chr11:76114912 chr11:76114892 nonsynonymous SNV 0.007 1 1 hm5C_associated_SNPs_45185 0 0 0 0 1 LOC100506127 chr11:76114965 5'GT 76114965 Upstream 74bp
chr16 53348828 53348828 1 + C T UCEC 53348814 + 53348794 53348834 41 TACTCAACCTCAAGGAATTCCTGATACAGAAAGTCCAGTTC TACTCAACCTCAAGGAATTCCTGATACAGAAAGTTCAGTTC < 41bp 1 0.203638655913926 1 0.087408185005188 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHD9 ENSG00000177200 CDS Human protein_coding chr16:53348814 chr16:53348828 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_45187 0 0 0 0 1 CHD9 chr16:53348735 3'AG 53348735 Downstream 94bp
chr16 53348828 53348828 1 + C T UCEC 53348820 + 53348800 53348840 41 ACCTCAAGGAATTCCTGATACAGAAAGTCCAGTTCCAGTTA ACCTCAAGGAATTCCTGATACAGAAAGTTCAGTTCCAGTTA < 41bp 1 0.598260839398029 1 0.411942571401596 experiment 0.803478321203942 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHD9 ENSG00000177200 CDS Human protein_coding chr16:53348820 chr16:53348828 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_45188 0 0 0 0 1 CHD9 chr16:53348735 3'AG 53348735 Downstream 94bp
chr12 57600307 57600307 1 + T G UCEC 57600323 + 57600303 57600343 41 AGCCTGTTCCCCGGCCACCCCCATTCGGCTTACGAGCAGGC AGCCGGTTCCCCGGCCACCCCCATTCGGCTTACGAGCAGGC < 41bp 1 0.0185750207400847 1 0.176496356725693 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57600323 chr12:57600307 nonsynonymous SNV 0.912 3 5 hm5C_associated_SNPs_45189 0 0 1 0 1 LRP1 chr12:57600256 3'AG 57600256 Downstream 52bp
chr9 116053076 116053076 1 + C A UCEC 116053079 + 116053059 116053099 41 ATCTATGGAATAAATTTCTCCCCCAATGGGTAAAATAAACA ATCTATGGAATAAATTTATCCCCCAATGGGTAAAATAAACA < 41bp 1 0.233448322849978 1 0.112582713365555 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116053079 chr9:116053076 nonsynonymous SNV 0.994 4 18 hm5C_associated_SNPs_45190 0 0 1 0 2 PRPF4 chr9:116052980 3'AG 116052980 Downstream 97bp
chr9 116053076 116053076 1 + C A UCEC 116053079 + 116053059 116053099 41 ATCTATGGAATAAATTTCTCCCCCAATGGGTAAAATAAACA ATCTATGGAATAAATTTATCCCCCAATGGGTAAAATAAACA < 41bp 1 0.233448322849978 1 0.112582713365555 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116053079 chr9:116053076 nonsynonymous SNV 0.994 4 18 hm5C_associated_SNPs_45190 0 0 1 0 2 PRPF4 chr9:116053087 5'GT 116053087 Upstream 12bp
chrX 153696876 153696876 1 + G T UCEC 153696889 + 153696869 153696909 41 AGAGCAAGAACCACCCCAAGCTGCTGCTACGCAGGTACCTG AGAGCAATAACCACCCCAAGCTGCTGCTACGCAGGTACCTG < 41bp 1 0.232190117473966 1 0.134073913097382 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696889 chrX:153696876 nonsynonymous SNV 0.997 4 8 hm5C_associated_SNPs_45191 0 0 1 0 1 PLXNA3 chrX:153696902 5'GT 153696902 Upstream 27bp
chr6 125550347 125550347 1 + G T UCEC 125550344 + 125550324 125550364 41 GAGATAAAACAAAAACTCGGCATGAACCTGATGAATGAATT GAGATAAAACAAAAACTCGGCATTAACCTGATGAATGAATT < 41bp 1 0.0667746256370425 1 0.0475977063179016 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPD52L1 ENSG00000111907 CDS Human protein_coding chr6:125550344 chr6:125550347 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_45193 0 0 1 0 2 TPD52L1 chr6:125550264 3'AG 125550264 Downstream 84bp
chr6 125550347 125550347 1 + G T UCEC 125550344 + 125550324 125550364 41 GAGATAAAACAAAAACTCGGCATGAACCTGATGAATGAATT GAGATAAAACAAAAACTCGGCATTAACCTGATGAATGAATT < 41bp 1 0.0667746256370425 1 0.0475977063179016 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPD52L1 ENSG00000111907 CDS Human protein_coding chr6:125550344 chr6:125550347 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_45193 0 0 1 0 2 TPD52L1 chr6:125550412 5'GT 125550412 Upstream 66bp
chr9 37501733 37501733 1 + C A UCEC 37501742 + 37501722 37501762 41 AATTTCGGATTCTATGAAGGCGAAGATTACTGCATATGTGA AATTTCGGATTATATGAAGGCGAAGATTACTGCATATGTGA < 41bp 1 0.299595262530412 1 0.307938396930695 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1E ENSG00000137054 CDS Human protein_coding chr9:37501742 chr9:37501733 nonsynonymous SNV 0.998 4 12 hm5C_associated_SNPs_45195 0 0 1 0 1 POLR1E chr9:37501710 3'AG 37501710 Downstream 24bp
chr1 214503554 214503554 1 + G T UCEC 214503545 + 214503525 214503565 41 TATTGATCTCCTGTACCCAACGGAAGATAGAAATGACCGGT TATTGATCTCCTGTACCCAACGGAAGATATAAATGACCGGT < 41bp 1 0.625174936289887 1 0.64493590593338 experiment 0.749650127420226 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214503545 chr1:214503554 nonsynonymous SNV 0.995 4 30 hm5C_associated_SNPs_45198 0 0 1 2 2 SMYD2 chr1:214503511 3'AG 214503511 Downstream 44bp
chr1 214503554 214503554 1 + G T UCEC 214503545 + 214503525 214503565 41 TATTGATCTCCTGTACCCAACGGAAGATAGAAATGACCGGT TATTGATCTCCTGTACCCAACGGAAGATATAAATGACCGGT < 41bp 1 0.625174936289887 1 0.64493590593338 experiment 0.749650127420226 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214503545 chr1:214503554 nonsynonymous SNV 0.995 4 30 hm5C_associated_SNPs_45198 0 0 1 2 2 SMYD2 chr1:214503621 5'GT 214503621 Upstream 68bp
chr19 7589924 7589924 1 + G T UCEC 7589936 + 7589916 7589956 41 CACCCCCAGAAGAGGAAGACCTTCGCCGTCGTCTCAAATAC CACCCCCATAAGAGGAAGACCTTCGCCGTCGTCTCAAATAC < 41bp 1 0.29086826592796 1 0.091355174779892 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7589936 chr19:7589924 stopgain 0.918 1 9 hm5C_associated_SNPs_45199 0 0 1 0 1 MCOLN1 chr19:7589847 3'AG 7589847 Downstream 78bp
chr2 169622173 169622173 1 + T G UCEC 169622178 + 169622158 169622198 41 GGTGGGTTTTTAACCTACTGCTATTGCTAGTACAAGGGTTG GGTGGGTTTTTAACCGACTGCTATTGCTAGTACAAGGGTTG < 41bp 1 0.101270957962163 1 0.0755776464939117 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169622178 chr2:169622173 nonsynonymous SNV 0.930 2 16 hm5C_associated_SNPs_45200 0 0 1 0 1 CERS6 chr2:169622258 5'GT 169622258 Upstream 86bp
chr20 35862434 35862434 1 + T C UCEC 35862428 + 35862408 35862448 41 CTCCCCATCATTCAGTGGATCCGGATTGGTGCCAATGTCTC CTCCCCATCATTCAGTGGATCCGGATCGGTGCCAATGTCTC < 41bp 1 0.420439539081198 1 0.475726157426834 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35862428 chr20:35862434 synonymous SNV . 0 27 hm5C_associated_SNPs_45201 0 0 1 0 2 RPN2 chr20:35862423 3'AG 35862423 Downstream 12bp
chr20 35862434 35862434 1 + T C UCEC 35862428 + 35862408 35862448 41 CTCCCCATCATTCAGTGGATCCGGATTGGTGCCAATGTCTC CTCCCCATCATTCAGTGGATCCGGATCGGTGCCAATGTCTC < 41bp 1 0.420439539081198 1 0.475726157426834 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35862428 chr20:35862434 synonymous SNV . 0 27 hm5C_associated_SNPs_45201 0 0 1 0 2 RPN2 chr20:35862498 5'GT 35862498 Upstream 65bp
chr11 722135 722135 1 + C T UCEC 722139 + 722119 722159 41 CCAGCGCCGCGGAGCTCGTGCACTTCCTCTTCGGGCCTCTG CCAGCGCCGCGGAGCTTGTGCACTTCCTCTTCGGGCCTCTG < 41bp 1 0.133579373077141 1 0.0465401411056519 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722139 chr11:722135 synonymous SNV . 0 17 hm5C_associated_SNPs_45202 0 0 1 0 2 EPS8L2 chr11:722091 3'AG 722091 Downstream 45bp
chr11 722135 722135 1 + C T UCEC 722139 + 722119 722159 41 CCAGCGCCGCGGAGCTCGTGCACTTCCTCTTCGGGCCTCTG CCAGCGCCGCGGAGCTTGTGCACTTCCTCTTCGGGCCTCTG < 41bp 1 0.133579373077141 1 0.0465401411056519 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722139 chr11:722135 synonymous SNV . 0 17 hm5C_associated_SNPs_45202 0 0 1 0 2 EPS8L2 chr11:722165 5'GT 722165 Upstream 31bp
chr17 53852187 53852187 1 + A C UCEC 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTCGATAACCCGGGTGGCCACATTCCGTCCTGGCTCATT < 41bp 1 0.382251610603269 1 0.0713023245334625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852187 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_45205 0 0 1 1 2 PCTP chr17:53852153 3'AG 53852153 Downstream 35bp
chr17 53852187 53852187 1 + A C UCEC 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTCGATAACCCGGGTGGCCACATTCCGTCCTGGCTCATT < 41bp 1 0.382251610603269 1 0.0713023245334625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852187 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_45205 0 0 1 1 2 PCTP chr17:53852220 5'GT 53852220 Upstream 34bp
chrX 154005106 154005106 1 + G T UCEC 154005114 + 154005094 154005134 41 GAAGAAGAAGAAGAAGAAAGCAAAAGAGGTAGAATTGGTTT GAAGAAGAAGAATAAGAAAGCAAAAGAGGTAGAATTGGTTT < 41bp 1 0.680083499262874 1 0.494701117277145 experiment 0.639833001474252 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DKC1 ENSG00000130826 CDS Human protein_coding chrX:154005114 chrX:154005106 nonsynonymous SNV 1.000 5 13 hm5C_associated_SNPs_45208 0 0 1 0 1 DKC1 chrX:154005074 3'AG 154005074 Downstream 33bp
chr2 131801886 131801886 1 + C T UCEC 131801875 + 131801855 131801895 41 AGGCCAGCATCTGGCAGGACCTGCTCCGCCGCGACGTGTTG AGGCCAGCATCTGGCAGGACCTGCTCCGCCGTGACGTGTTG < 41bp 1 0.194853534978179 1 0.0958689749240875 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF4 ENSG00000136002 CDS Human protein_coding chr2:131801875 chr2:131801886 synonymous SNV . 0 32 hm5C_associated_SNPs_45209 0 0 0 0 1 ARHGEF4 chr2:131801872 3'AG 131801872 Downstream 15bp
chr5 131953926 131953926 1 + T G UCEC 131953938 + 131953918 131953958 41 GATGATTGTTATGAGGACAACAGAACTTGTGAACAAGGATC GATGATTGGTATGAGGACAACAGAACTTGTGAACAAGGATC < 41bp 1 0.536395426813637 1 0.514515340328217 experiment 0.927209146372725 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131953938 chr5:131953926 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_45210 0 0 1 0 1 RAD50 chr5:131953986 5'GT 131953986 Upstream 61bp
chr14 76638273 76638273 1 + A G UCEC 76638267 + 76638247 76638287 41 TAATCTTCTGCCCAAGTGGGCTCCTGATCATTGTTCTGAAG TAATCTTCTGCCCAAGTGGGCTCCTGGTCATTGTTCTGAAG < 41bp 1 0.281554833953444 1 0.189268440008163 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GPATCH2L ENSG00000089916 CDS Human protein_coding chr14:76638267 chr14:76638273 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_45211 0 0 1 0 2 GPATCH2L chr14:76638186 3'AG 76638186 Downstream 88bp
chr14 76638273 76638273 1 + A G UCEC 76638267 + 76638247 76638287 41 TAATCTTCTGCCCAAGTGGGCTCCTGATCATTGTTCTGAAG TAATCTTCTGCCCAAGTGGGCTCCTGGTCATTGTTCTGAAG < 41bp 1 0.281554833953444 1 0.189268440008163 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GPATCH2L ENSG00000089916 CDS Human protein_coding chr14:76638267 chr14:76638273 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_45211 0 0 1 0 2 GPATCH2L chr14:76638362 5'GT 76638362 Upstream 90bp
chr15 91479520 91479520 1 + G T UCEC 91479512 + 91479492 91479532 41 ACAGCGCTCCTGTTTGTGCTCAGCCATTGAAAAGGATGGTG ACAGCGCTCCTGTTTGTGCTCAGCCATTTAAAAGGATGGTG < 41bp 1 0.200789434032124 1 0.129699647426605 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UNC45A ENSG00000140553 CDS Human protein_coding chr15:91479512 chr15:91479520 stopgain 1.000 0 29 hm5C_associated_SNPs_45212 0 0 1 0 1 UNC45A chr15:91479515 3'AG 91479515 Downstream 6bp
chrX 105891613 105891613 1 + A G UCEC 105891593 + 105891573 105891613 41 ACAAACAAAGGGAATTAAACCGGGCATGCCAAGCATCTTCA ACAAACAAAGGGAATTAAACCGGGCATGCCAAGCATCTTCG < 41bp 1 0.714074457193128 1 0.608018577098846 experiment 0.571851085613744 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105891593 chrX:105891613 nonsynonymous SNV 0.000 0 41 hm5C_associated_SNPs_45217 0 0 1 0 1 CXorf57 chrX:105891616 5'GT 105891616 Upstream 4bp
chrX 49031029 49031029 1 + G C UCEC 49031034 + 49031014 49031054 41 CCTGCAGACCCCGCAGATGGCCCGGTGTAGGCGAACTTCCC CCTGCAGACCCCGCACATGGCCCGGTGTAGGCGAACTTCCC < 41bp 1 0.534671262501227 1 0.123566091060638 experiment 0.930657474997545 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLP2 ENSG00000102007 CDS Human protein_coding chrX:49031034 chrX:49031029 nonsynonymous SNV 0.568 2 16 hm5C_associated_SNPs_45218 0 0 1 0 1 PLP2 chrX:49031021 3'AG 49031021 Downstream 9bp
chr9 100405549 100405549 1 + G T UCEC 100405545 + 100405525 100405565 41 ATTAGTTGGACTACTGAATGCCAGGAATTACAATTTTGGTG ATTAGTTGGACTACTGAATGCCAGTAATTACAATTTTGGTG < 41bp 1 0.194256183207203 1 0.165948569774628 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100405545 chr9:100405549 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_45219 0 0 1 0 2 NCBP1 chr9:100405486 3'AG 100405486 Downstream 64bp
chr9 100405549 100405549 1 + G T UCEC 100405545 + 100405525 100405565 41 ATTAGTTGGACTACTGAATGCCAGGAATTACAATTTTGGTG ATTAGTTGGACTACTGAATGCCAGTAATTACAATTTTGGTG < 41bp 1 0.194256183207203 1 0.165948569774628 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100405545 chr9:100405549 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_45219 0 0 1 0 2 NCBP1 chr9:100405642 5'GT 100405642 Upstream 94bp
chr4 126398362 126398362 1 + G T UCEC 126398352 + 126398332 126398372 41 AGAGTTACAGTTGGAGGTATCAGATCTCTAGAACCAATCCT AGAGTTACAGTTGGAGGTATCAGATCTCTATAACCAATCCT < 41bp 1 0.130204071306556 1 0.792271018028259 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126398352 chr4:126398362 stopgain 0.437 0 31 hm5C_associated_SNPs_45220 0 0 0 0 1 FAT4 chr4:126398310 3'AG 126398310 Downstream 53bp
chr7 130021518 130021518 1 + C T UCEC 130021498 + 130021478 130021518 41 TCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC TCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTT < 41bp 1 0.598589265749564 1 0.156729847192764 experiment 0.802821468500873 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021498 chr7:130021518 synonymous SNV . 0 41 hm5C_associated_SNPs_45221 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 48bp
chr7 130021518 130021518 1 + C T UCEC 130021498 + 130021478 130021518 41 TCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC TCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTT < 41bp 1 0.598589265749564 1 0.156729847192764 experiment 0.802821468500873 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021498 chr7:130021518 synonymous SNV . 0 41 hm5C_associated_SNPs_45221 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 4bp
chr7 130021518 130021518 1 + C T UCEC 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTTCGAGT < 41bp 1 0.172403706450607 1 0.132423728704453 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021518 synonymous SNV . 0 36 hm5C_associated_SNPs_45222 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 48bp
chr7 130021518 130021518 1 + C T UCEC 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTTCGAGT < 41bp 1 0.172403706450607 1 0.132423728704453 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021518 synonymous SNV . 0 36 hm5C_associated_SNPs_45222 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 4bp
chr7 130021518 130021518 1 + C T UCEC 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTTCGAGTGC < 41bp 1 0.205851410990566 1 0.0457748174667358 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021518 synonymous SNV . 0 34 hm5C_associated_SNPs_45223 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 48bp
chr7 130021518 130021518 1 + C T UCEC 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTTCGAGTGC < 41bp 1 0.205851410990566 1 0.0457748174667358 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021518 synonymous SNV . 0 34 hm5C_associated_SNPs_45223 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 4bp
chr7 130021518 130021518 1 + C T UCEC 130021506 + 130021486 130021526 41 GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC GGGCCTGCCCACCCTGGCTCCCCCATCGACGTTCGAGTGCC < 41bp 1 0.445216635195743 1 0.495363771915436 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021506 chr7:130021518 synonymous SNV . 0 33 hm5C_associated_SNPs_45224 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 48bp
chr7 130021518 130021518 1 + C T UCEC 130021506 + 130021486 130021526 41 GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC GGGCCTGCCCACCCTGGCTCCCCCATCGACGTTCGAGTGCC < 41bp 1 0.445216635195743 1 0.495363771915436 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021506 chr7:130021518 synonymous SNV . 0 33 hm5C_associated_SNPs_45224 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 4bp
chr7 130021518 130021518 1 + C T UCEC 130021507 + 130021487 130021527 41 GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC GGCCTGCCCACCCTGGCTCCCCCATCGACGTTCGAGTGCCC < 41bp 1 0.116464514648787 1 0.108918428421021 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021507 chr7:130021518 synonymous SNV . 0 32 hm5C_associated_SNPs_45225 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 48bp
chr7 130021518 130021518 1 + C T UCEC 130021507 + 130021487 130021527 41 GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC GGCCTGCCCACCCTGGCTCCCCCATCGACGTTCGAGTGCCC < 41bp 1 0.116464514648787 1 0.108918428421021 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021507 chr7:130021518 synonymous SNV . 0 32 hm5C_associated_SNPs_45225 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 4bp
chr7 130021518 130021518 1 + C T UCEC 130021508 + 130021488 130021528 41 GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT GCCTGCCCACCCTGGCTCCCCCATCGACGTTCGAGTGCCCT < 41bp 1 0.0428284070544618 1 0.401971280574799 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021508 chr7:130021518 synonymous SNV . 0 31 hm5C_associated_SNPs_45226 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 48bp
chr7 130021518 130021518 1 + C T UCEC 130021508 + 130021488 130021528 41 GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT GCCTGCCCACCCTGGCTCCCCCATCGACGTTCGAGTGCCCT < 41bp 1 0.0428284070544618 1 0.401971280574799 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021508 chr7:130021518 synonymous SNV . 0 31 hm5C_associated_SNPs_45226 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 4bp
chr7 130021518 130021518 1 + C T UCEC 130021509 + 130021489 130021529 41 CCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT CCTGCCCACCCTGGCTCCCCCATCGACGTTCGAGTGCCCTT < 41bp 1 0.362858475176635 1 0.26350349187851 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021509 chr7:130021518 synonymous SNV . 0 30 hm5C_associated_SNPs_45227 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 48bp
chr7 130021518 130021518 1 + C T UCEC 130021509 + 130021489 130021529 41 CCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT CCTGCCCACCCTGGCTCCCCCATCGACGTTCGAGTGCCCTT < 41bp 1 0.362858475176635 1 0.26350349187851 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021509 chr7:130021518 synonymous SNV . 0 30 hm5C_associated_SNPs_45227 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 4bp
chr7 130021518 130021518 1 + C T UCEC 130021515 + 130021495 130021535 41 CACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAG CACCCTGGCTCCCCCATCGACGTTCGAGTGCCCTTCCCCAG < 41bp 1 0.233854821292186 1 0.389465570449829 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021515 chr7:130021518 synonymous SNV . 0 24 hm5C_associated_SNPs_45228 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 48bp
chr7 130021518 130021518 1 + C T UCEC 130021515 + 130021495 130021535 41 CACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAG CACCCTGGCTCCCCCATCGACGTTCGAGTGCCCTTCCCCAG < 41bp 1 0.233854821292186 1 0.389465570449829 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021515 chr7:130021518 synonymous SNV . 0 24 hm5C_associated_SNPs_45228 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 4bp
chr7 130021518 130021518 1 + C T UCEC 130021519 + 130021499 130021539 41 CTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATC CTGGCTCCCCCATCGACGTTCGAGTGCCCTTCCCCAGCATC < 41bp 1 0.493081201423102 1 0.294633537530899 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021519 chr7:130021518 synonymous SNV . 0 20 hm5C_associated_SNPs_45229 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 48bp
chr7 130021518 130021518 1 + C T UCEC 130021519 + 130021499 130021539 41 CTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATC CTGGCTCCCCCATCGACGTTCGAGTGCCCTTCCCCAGCATC < 41bp 1 0.493081201423102 1 0.294633537530899 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021519 chr7:130021518 synonymous SNV . 0 20 hm5C_associated_SNPs_45229 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 4bp
chr7 130021518 130021518 1 + C T UCEC 130021525 + 130021505 130021545 41 CCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCG CCCCCATCGACGTTCGAGTGCCCTTCCCCAGCATCCAGGCG < 41bp 1 0.0649889369305737 1 0.0116992890834808 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021525 chr7:130021518 synonymous SNV . 0 14 hm5C_associated_SNPs_45230 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 48bp
chr7 130021518 130021518 1 + C T UCEC 130021525 + 130021505 130021545 41 CCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCG CCCCCATCGACGTTCGAGTGCCCTTCCCCAGCATCCAGGCG < 41bp 1 0.0649889369305737 1 0.0116992890834808 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021525 chr7:130021518 synonymous SNV . 0 14 hm5C_associated_SNPs_45230 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 4bp
chr7 130021518 130021518 1 + C T UCEC 130021526 + 130021506 130021546 41 CCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGG CCCCATCGACGTTCGAGTGCCCTTCCCCAGCATCCAGGCGG < 41bp 1 0.0253374786519072 1 0.0302430391311646 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021526 chr7:130021518 synonymous SNV . 0 13 hm5C_associated_SNPs_45231 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 48bp
chr7 130021518 130021518 1 + C T UCEC 130021526 + 130021506 130021546 41 CCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGG CCCCATCGACGTTCGAGTGCCCTTCCCCAGCATCCAGGCGG < 41bp 1 0.0253374786519072 1 0.0302430391311646 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021526 chr7:130021518 synonymous SNV . 0 13 hm5C_associated_SNPs_45231 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 4bp
chr7 130021518 130021518 1 + C T UCEC 130021527 + 130021507 130021547 41 CCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGT CCCATCGACGTTCGAGTGCCCTTCCCCAGCATCCAGGCGGT < 41bp 1 0.142416053464088 1 0.0433138608932495 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021527 chr7:130021518 synonymous SNV . 0 12 hm5C_associated_SNPs_45232 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 48bp
chr7 130021518 130021518 1 + C T UCEC 130021527 + 130021507 130021547 41 CCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGT CCCATCGACGTTCGAGTGCCCTTCCCCAGCATCCAGGCGGT < 41bp 1 0.142416053464088 1 0.0433138608932495 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021527 chr7:130021518 synonymous SNV . 0 12 hm5C_associated_SNPs_45232 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 4bp
chr7 130021518 130021518 1 + C T UCEC 130021530 + 130021510 130021550 41 ATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAA ATCGACGTTCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAA < 41bp 1 0.679089077444628 1 0.597406566143036 experiment 0.641821845110745 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021530 chr7:130021518 synonymous SNV . 0 9 hm5C_associated_SNPs_45233 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 48bp
chr7 130021518 130021518 1 + C T UCEC 130021530 + 130021510 130021550 41 ATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAA ATCGACGTTCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAA < 41bp 1 0.679089077444628 1 0.597406566143036 experiment 0.641821845110745 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021530 chr7:130021518 synonymous SNV . 0 9 hm5C_associated_SNPs_45233 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 4bp
chr7 130021518 130021518 1 + C T UCEC 130021531 + 130021511 130021551 41 TCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAG TCGACGTTCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAG < 41bp 1 0.380971863002142 1 0.29364675283432 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021531 chr7:130021518 synonymous SNV . 0 8 hm5C_associated_SNPs_45234 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 48bp
chr7 130021518 130021518 1 + C T UCEC 130021531 + 130021511 130021551 41 TCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAG TCGACGTTCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAG < 41bp 1 0.380971863002142 1 0.29364675283432 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021531 chr7:130021518 synonymous SNV . 0 8 hm5C_associated_SNPs_45234 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 4bp
chr7 130021518 130021518 1 + C T UCEC 130021532 + 130021512 130021552 41 CGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGA CGACGTTCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGA < 41bp 1 0.306051187213352 1 0.199511855840683 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021532 chr7:130021518 synonymous SNV . 0 7 hm5C_associated_SNPs_45235 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 48bp
chr7 130021518 130021518 1 + C T UCEC 130021532 + 130021512 130021552 41 CGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGA CGACGTTCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGA < 41bp 1 0.306051187213352 1 0.199511855840683 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021532 chr7:130021518 synonymous SNV . 0 7 hm5C_associated_SNPs_45235 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 4bp
chr7 130021518 130021518 1 + C T UCEC 130021536 + 130021516 130021556 41 GTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT GTTCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT < 41bp 1 0.187331587875063 1 0.166053175926208 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021536 chr7:130021518 synonymous SNV . 0 3 hm5C_associated_SNPs_45236 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 48bp
chr7 130021518 130021518 1 + C T UCEC 130021536 + 130021516 130021556 41 GTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT GTTCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT < 41bp 1 0.187331587875063 1 0.166053175926208 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021536 chr7:130021518 synonymous SNV . 0 3 hm5C_associated_SNPs_45236 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 4bp
chr11 118495733 118495733 1 + G A UCEC 118495741 + 118495721 118495761 41 AGCATGATTCCAGCAGGGGGCCGAGCCCCTGGGCCCCCCTA AGCATGATTCCAACAGGGGGCCGAGCCCCTGGGCCCCCCTA < 41bp 1 0.201624237312185 1 0.438468396663666 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495741 chr11:118495733 nonsynonymous SNV 0.997 1 13 hm5C_associated_SNPs_45237 0 0 0 0 2 PHLDB1 chr11:118495650 3'AG 118495650 Downstream 84bp
chr11 118495733 118495733 1 + G A UCEC 118495741 + 118495721 118495761 41 AGCATGATTCCAGCAGGGGGCCGAGCCCCTGGGCCCCCCTA AGCATGATTCCAACAGGGGGCCGAGCCCCTGGGCCCCCCTA < 41bp 1 0.201624237312185 1 0.438468396663666 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495741 chr11:118495733 nonsynonymous SNV 0.997 1 13 hm5C_associated_SNPs_45237 0 0 0 0 2 PHLDB1 chr11:118495775 5'GT 118495775 Upstream 43bp
chr11 118495733 118495733 1 + G A UCEC 118495742 + 118495722 118495762 41 GCATGATTCCAGCAGGGGGCCGAGCCCCTGGGCCCCCCTAC GCATGATTCCAACAGGGGGCCGAGCCCCTGGGCCCCCCTAC < 41bp 1 0.355659100771804 1 0.820199251174927 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495742 chr11:118495733 nonsynonymous SNV 0.997 1 12 hm5C_associated_SNPs_45238 0 0 0 0 2 PHLDB1 chr11:118495650 3'AG 118495650 Downstream 84bp
chr11 118495733 118495733 1 + G A UCEC 118495742 + 118495722 118495762 41 GCATGATTCCAGCAGGGGGCCGAGCCCCTGGGCCCCCCTAC GCATGATTCCAACAGGGGGCCGAGCCCCTGGGCCCCCCTAC < 41bp 1 0.355659100771804 1 0.820199251174927 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495742 chr11:118495733 nonsynonymous SNV 0.997 1 12 hm5C_associated_SNPs_45238 0 0 0 0 2 PHLDB1 chr11:118495775 5'GT 118495775 Upstream 43bp
chr20 47641899 47641899 1 + T C UCEC 47641892 + 47641872 47641912 41 TCCACATAGAGACGGAGGATCAGGGCATGTATAAGTACATG TCCACATAGAGACGGAGGATCAGGGCACGTATAAGTACATG < 41bp 1 0.587158257961579 1 0.896369218826294 experiment 0.825683484076843 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47641892 chr20:47641899 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_45239 0 0 0 0 1 ARFGEF2 chr20:47641850 3'AG 47641850 Downstream 50bp
chr17 4859361 4859361 1 + G T UCEC 4859343 + 4859323 4859363 41 GATGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGC GATGACTTGACAGTCACCAACCCCAAGAGGATTGCCCATGC < 41bp 1 0.698498550720247 1 0.508149325847626 experiment 0.603002898559505 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859343 chr17:4859361 nonsynonymous SNV 0.997 2 39 hm5C_associated_SNPs_45240 0 0 1 0 1 ENO3 chr17:4859438 5'GT 4859438 Upstream 78bp
chr17 4859361 4859361 1 + G T UCEC 4859344 + 4859324 4859364 41 ATGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCC ATGACTTGACAGTCACCAACCCCAAGAGGATTGCCCATGCC < 41bp 1 0.538488253429809 1 0.276055067777634 experiment 0.923023493140381 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859344 chr17:4859361 nonsynonymous SNV 0.997 2 38 hm5C_associated_SNPs_45241 0 0 1 0 1 ENO3 chr17:4859438 5'GT 4859438 Upstream 78bp
chr17 4859361 4859361 1 + G T UCEC 4859345 + 4859325 4859365 41 TGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCCG TGACTTGACAGTCACCAACCCCAAGAGGATTGCCCATGCCG < 41bp 1 0.169012587530584 1 0.195262938737869 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859345 chr17:4859361 nonsynonymous SNV 0.997 2 37 hm5C_associated_SNPs_45242 0 0 1 0 1 ENO3 chr17:4859438 5'GT 4859438 Upstream 78bp
chr17 4859361 4859361 1 + G T UCEC 4859357 + 4859337 4859377 41 CACCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGG CACCAACCCCAAGAGGATTGCCCATGCCGTTGAGAAGAAGG < 41bp 1 0.133311007051351 1 0.0661524534225464 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859357 chr17:4859361 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_45243 0 0 1 0 1 ENO3 chr17:4859438 5'GT 4859438 Upstream 78bp
chr17 4859361 4859361 1 + G T UCEC 4859358 + 4859338 4859378 41 ACCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGC ACCAACCCCAAGAGGATTGCCCATGCCGTTGAGAAGAAGGC < 41bp 1 0.0826665609094273 1 0.0722693204879761 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859358 chr17:4859361 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_45244 0 0 1 0 1 ENO3 chr17:4859438 5'GT 4859438 Upstream 78bp
chr17 4859361 4859361 1 + G T UCEC 4859359 + 4859339 4859379 41 CCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCC CCAACCCCAAGAGGATTGCCCATGCCGTTGAGAAGAAGGCC < 41bp 1 0.148122735492013 1 0.162793725728989 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859359 chr17:4859361 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_45245 0 0 1 0 1 ENO3 chr17:4859438 5'GT 4859438 Upstream 78bp
chr17 4859361 4859361 1 + G T UCEC 4859363 + 4859343 4859383 41 CCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCA CCCCAAGAGGATTGCCCATGCCGTTGAGAAGAAGGCCTGCA < 41bp 1 0.174871978210715 1 0.078055202960968 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859363 chr17:4859361 nonsynonymous SNV 0.997 2 19 hm5C_associated_SNPs_45246 0 0 1 0 1 ENO3 chr17:4859438 5'GT 4859438 Upstream 78bp
chr17 4859361 4859361 1 + G T UCEC 4859364 + 4859344 4859384 41 CCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCAA CCCAAGAGGATTGCCCATGCCGTTGAGAAGAAGGCCTGCAA < 41bp 1 0.345388425854297 1 0.425027668476105 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859364 chr17:4859361 nonsynonymous SNV 0.997 2 18 hm5C_associated_SNPs_45247 0 0 1 0 1 ENO3 chr17:4859438 5'GT 4859438 Upstream 78bp
chr17 4859361 4859361 1 + G T UCEC 4859378 + 4859358 4859398 41 CCAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA CCATGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA < 41bp 1 0.140781727284817 1 0.0729342997074127 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859378 chr17:4859361 nonsynonymous SNV 0.997 2 4 hm5C_associated_SNPs_45248 0 0 1 0 1 ENO3 chr17:4859438 5'GT 4859438 Upstream 78bp
chr17 4859361 4859361 1 + G T UCEC 4859379 + 4859359 4859399 41 CAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAA CATGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAA < 41bp 1 0.774509041028427 1 0.226617425680161 experiment 0.450981917943147 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859379 chr17:4859361 nonsynonymous SNV 0.997 2 3 hm5C_associated_SNPs_45249 0 0 1 0 1 ENO3 chr17:4859438 5'GT 4859438 Upstream 78bp
chr7 128445506 128445506 1 + T C UCEC 128445505 + 128445485 128445525 41 AGAAATGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGT AGAAATGGATTTCTTAGAGCCCGATCCTGAAATGCAGTTGT < 41bp 1 0.0796423921032068 1 0.275891304016113 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445505 chr7:128445506 synonymous SNV . 0 22 hm5C_associated_SNPs_45251 0 0 1 0 2 CCDC136 chr7:128445413 3'AG 128445413 Downstream 94bp
chr7 128445506 128445506 1 + T C UCEC 128445505 + 128445485 128445525 41 AGAAATGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGT AGAAATGGATTTCTTAGAGCCCGATCCTGAAATGCAGTTGT < 41bp 1 0.0796423921032068 1 0.275891304016113 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445505 chr7:128445506 synonymous SNV . 0 22 hm5C_associated_SNPs_45251 0 0 1 0 2 CCDC136 chr7:128445578 5'GT 128445578 Upstream 73bp
chr7 128445506 128445506 1 + T C UCEC 128445510 + 128445490 128445530 41 TGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGTTACGG TGGATTTCTTAGAGCCCGATCCTGAAATGCAGTTGTTACGG < 41bp 1 0.285919787589947 1 0.481176674365997 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445510 chr7:128445506 synonymous SNV . 0 17 hm5C_associated_SNPs_45252 0 0 1 0 2 CCDC136 chr7:128445413 3'AG 128445413 Downstream 94bp
chr7 128445506 128445506 1 + T C UCEC 128445510 + 128445490 128445530 41 TGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGTTACGG TGGATTTCTTAGAGCCCGATCCTGAAATGCAGTTGTTACGG < 41bp 1 0.285919787589947 1 0.481176674365997 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445510 chr7:128445506 synonymous SNV . 0 17 hm5C_associated_SNPs_45252 0 0 1 0 2 CCDC136 chr7:128445578 5'GT 128445578 Upstream 73bp
chr22 42032231 42032231 1 + G A UCEC 42032243 + 42032223 42032263 41 ATATTTACGTCTTACAGGAGCTGGATAATCCAGGTCAGTAA ATATTTACATCTTACAGGAGCTGGATAATCCAGGTCAGTAA < 41bp 1 0.668102698080147 1 0.31388846039772 experiment 0.663794603839705 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42032243 chr22:42032231 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_45253 0 0 1 0 1 XRCC6 chr22:42032255 5'GT 42032255 Upstream 25bp
chr1 65684536 65684536 1 + G A UCEC 65684546 + 65684526 65684566 41 CTTAAAGATCGTCTCAGCCGCCGTTGGATTCACCCTCCTAG CTTAAAGATCATCTCAGCCGCCGTTGGATTCACCCTCCTAG < 41bp 1 0.0868616512504413 1 0.0867177546024323 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AK4 ENSG00000162433 CDS Human protein_coding chr1:65684546 chr1:65684536 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_45254 0 0 0 0 2 AK4 chr1:65684437 3'AG 65684437 Downstream 100bp
chr1 65684536 65684536 1 + G A UCEC 65684546 + 65684526 65684566 41 CTTAAAGATCGTCTCAGCCGCCGTTGGATTCACCCTCCTAG CTTAAAGATCATCTCAGCCGCCGTTGGATTCACCCTCCTAG < 41bp 1 0.0868616512504413 1 0.0867177546024323 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AK4 ENSG00000162433 CDS Human protein_coding chr1:65684546 chr1:65684536 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_45254 0 0 0 0 2 AK4 chr1:65684609 5'GT 65684609 Upstream 74bp
chr1 154962719 154962719 1 + G T UCEC 154962708 + 154962688 154962728 41 CCCCTTTCCCTGAGCTGGAACAGTTTCTACAGGACACTATC CCCCTTTCCCTGAGCTGGAACAGTTTCTACATGACACTATC < 41bp 1 0.266322932388366 1 0.408698856830597 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962708 chr1:154962719 nonsynonymous SNV 0.998 1 32 hm5C_associated_SNPs_45255 0 0 1 0 2 FLAD1 chr1:154962635 3'AG 154962635 Downstream 85bp
chr1 154962719 154962719 1 + G T UCEC 154962708 + 154962688 154962728 41 CCCCTTTCCCTGAGCTGGAACAGTTTCTACAGGACACTATC CCCCTTTCCCTGAGCTGGAACAGTTTCTACATGACACTATC < 41bp 1 0.266322932388366 1 0.408698856830597 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962708 chr1:154962719 nonsynonymous SNV 0.998 1 32 hm5C_associated_SNPs_45255 0 0 1 0 2 FLAD1 chr1:154962733 5'GT 154962733 Upstream 15bp
chr1 12061837 12061837 1 + G A UCEC 12061838 + 12061818 12061858 41 CCTCCTAGGGGGCGCTCTCGCAGAAGGCTTTCAAGTGAGGA CCTCCTAGGGGGCGCTCTCACAGAAGGCTTTCAAGTGAGGA < 41bp 1 0.798642081294122 1 0.683377027511597 experiment 0.402715837411755 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061838 chr1:12061837 nonsynonymous SNV 0.996 3 20 hm5C_associated_SNPs_45256 0 0 1 0 2 MFN2 chr1:12061826 3'AG 12061826 Downstream 12bp
chr1 12061837 12061837 1 + G A UCEC 12061838 + 12061818 12061858 41 CCTCCTAGGGGGCGCTCTCGCAGAAGGCTTTCAAGTGAGGA CCTCCTAGGGGGCGCTCTCACAGAAGGCTTTCAAGTGAGGA < 41bp 1 0.798642081294122 1 0.683377027511597 experiment 0.402715837411755 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061838 chr1:12061837 nonsynonymous SNV 0.996 3 20 hm5C_associated_SNPs_45256 0 0 1 0 2 MFN2 chr1:12061893 5'GT 12061893 Upstream 57bp
chr13 115064335 115064335 1 + G T UCEC 115064352 + 115064332 115064372 41 AAAGGGAGAGGAACCAACCACAGAGAAACCAAAAGAAAGAG AAATGGAGAGGAACCAACCACAGAGAAACCAAAAGAAAGAG < 41bp 1 0.588539727430469 1 0.804012298583984 experiment 0.822920545139061 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UPF3A ENSG00000169062 CDS Human protein_coding chr13:115064352 chr13:115064335 nonsynonymous SNV 0.999 2 4 hm5C_associated_SNPs_45257 0 0 1 0 1 UPF3A chr13:115064315 3'AG 115064315 Downstream 21bp
chr15 74325015 74325015 1 + C T UCEC 74325006 + 74324986 74325026 41 TACAGTCAGTGCCCGGGGCACACCCCGTGCCAGTGTACGCC TACAGTCAGTGCCCGGGGCACACCCCGTGTCAGTGTACGCC < 41bp 1 0.276724617315114 1 0.044034332036972 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74325006 chr15:74325015 nonsynonymous SNV 0.008 3 30 hm5C_associated_SNPs_45258 0 0 0 0 2 PML chr15:74324968 3'AG 74324968 Downstream 48bp
chr15 74325015 74325015 1 + C T UCEC 74325006 + 74324986 74325026 41 TACAGTCAGTGCCCGGGGCACACCCCGTGCCAGTGTACGCC TACAGTCAGTGCCCGGGGCACACCCCGTGTCAGTGTACGCC < 41bp 1 0.276724617315114 1 0.044034332036972 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74325006 chr15:74325015 nonsynonymous SNV 0.008 3 30 hm5C_associated_SNPs_45258 0 0 0 0 2 PML chr15:74325056 5'GT 74325056 Upstream 42bp
chr1 43917167 43917167 1 - G T UCEC 43917159 - 43917139 43917179 41 AGCCCAGCAGCCCCGGAGAGCTGAATTTCCCCTATCTGTTT AGCCCAGCAGCCACGGAGAGCTGAATTTCCCCTATCTGTTT < 41bp 1 0.633225684308745 1 0.250292956829071 experiment 0.733548631382511 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HYI ENSG00000178922 CDS Human protein_coding chr1:43917159 chr1:43917167 nonsynonymous SNV 0.995 2 13 hm5C_associated_SNPs_45259 0 0 0 0 3 HYI chr1:43917081 5'GT 43917081 Upstream 87bp
chr1 43917167 43917167 1 - G T UCEC 43917159 - 43917139 43917179 41 AGCCCAGCAGCCCCGGAGAGCTGAATTTCCCCTATCTGTTT AGCCCAGCAGCCACGGAGAGCTGAATTTCCCCTATCTGTTT < 41bp 1 0.633225684308745 1 0.250292956829071 experiment 0.733548631382511 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HYI ENSG00000178922 CDS Human protein_coding chr1:43917159 chr1:43917167 nonsynonymous SNV 0.995 2 13 hm5C_associated_SNPs_45259 0 0 0 0 3 HYI chr1:43917099 5'GT 43917099 Upstream 69bp
chr1 43917167 43917167 1 - G T UCEC 43917159 - 43917139 43917179 41 AGCCCAGCAGCCCCGGAGAGCTGAATTTCCCCTATCTGTTT AGCCCAGCAGCCACGGAGAGCTGAATTTCCCCTATCTGTTT < 41bp 1 0.633225684308745 1 0.250292956829071 experiment 0.733548631382511 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HYI ENSG00000178922 CDS Human protein_coding chr1:43917159 chr1:43917167 nonsynonymous SNV 0.995 2 13 hm5C_associated_SNPs_45259 0 0 0 0 3 HYI chr1:43917215 3'AG 43917215 Downstream 49bp
chr6 34950938 34950938 1 + C A UCEC 34950926 + 34950906 34950946 41 AAAAGATAACCATGGACTGACTGCCCTAGACACTGTTCGGG AAAAGATAACCATGGACTGACTGCCCTAGACAATGTTCGGG < 41bp 1 0.111047592335634 1 0.163932532072067 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKS1A ENSG00000064999 CDS Human protein_coding chr6:34950926 chr6:34950938 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_45263 0 0 1 0 2 ANKS1A chr6:34950890 3'AG 34950890 Downstream 49bp
chr6 34950938 34950938 1 + C A UCEC 34950926 + 34950906 34950946 41 AAAAGATAACCATGGACTGACTGCCCTAGACACTGTTCGGG AAAAGATAACCATGGACTGACTGCCCTAGACAATGTTCGGG < 41bp 1 0.111047592335634 1 0.163932532072067 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKS1A ENSG00000064999 CDS Human protein_coding chr6:34950926 chr6:34950938 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_45263 0 0 1 0 2 ANKS1A chr6:34950991 5'GT 34950991 Upstream 54bp
chr1 203834171 203834171 1 + T C UCEC 203834189 + 203834169 203834209 41 GGTTTTGATGAGTATATGAACCTTGTATTAGATGATGCAGA GGCTTTGATGAGTATATGAACCTTGTATTAGATGATGCAGA < 41bp 1 0.044593175495416 1 0.0815619826316833 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SNRPE ENSG00000182004 CDS Human protein_coding chr1:203834189 chr1:203834171 synonymous SNV . 0 3 hm5C_associated_SNPs_45264 0 0 1 0 1 SNRPE chr1:203834247 5'GT 203834247 Upstream 77bp
chr3 58067463 58067463 1 + A C UCEC 58067455 + 58067435 58067475 41 CCAAGCTCAAGCCGGGGGCTCCTCTCAAACCCAAACTCAAC CCAAGCTCAAGCCGGGGGCTCCTCTCAACCCCAAACTCAAC < 41bp 1 0.0159470336532165 1 0.0564540922641754 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58067455 chr3:58067463 nonsynonymous SNV 1.000 5 29 hm5C_associated_SNPs_45265 0 0 1 0 1 FLNB chr3:58067503 5'GT 58067503 Upstream 41bp
chr3 58067463 58067463 1 + A C UCEC 58067456 + 58067436 58067476 41 CAAGCTCAAGCCGGGGGCTCCTCTCAAACCCAAACTCAACC CAAGCTCAAGCCGGGGGCTCCTCTCAACCCCAAACTCAACC < 41bp 1 0.0559067839932157 1 0.300461113452911 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58067456 chr3:58067463 nonsynonymous SNV 1.000 5 28 hm5C_associated_SNPs_45266 0 0 1 0 1 FLNB chr3:58067503 5'GT 58067503 Upstream 41bp
chr2 169551556 169551556 1 + A T UCEC 169551536 + 169551516 169551556 41 TTATTGGTCTTTGATGTTTTCTCAGTTCACTGATATCAAAA TTATTGGTCTTTGATGTTTTCTCAGTTCACTGATATCAAAT < 41bp 1 0.474622839790991 1 0.382927626371384 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169551536 chr2:169551556 stopgain 1.000 1 41 hm5C_associated_SNPs_45267 0 0 1 0 2 CERS6 chr2:169551469 3'AG 169551469 Downstream 88bp
chr2 169551556 169551556 1 + A T UCEC 169551536 + 169551516 169551556 41 TTATTGGTCTTTGATGTTTTCTCAGTTCACTGATATCAAAA TTATTGGTCTTTGATGTTTTCTCAGTTCACTGATATCAAAT < 41bp 1 0.474622839790991 1 0.382927626371384 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169551536 chr2:169551556 stopgain 1.000 1 41 hm5C_associated_SNPs_45267 0 0 1 0 2 CERS6 chr2:169551561 5'GT 169551561 Upstream 6bp
chr10 118314720 118314720 1 + G A UCEC 118314708 + 118314688 118314728 41 AGGGTTGGACCCAGCAGAACCTTGCTTTCAGGGCACACCTG AGGGTTGGACCCAGCAGAACCTTGCTTTCAGGACACACCTG < 41bp 1 0.368661059694611 1 0.293784499168396 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314708 chr10:118314720 nonsynonymous SNV 0.864 1 33 hm5C_associated_SNPs_45268 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 90bp
chr10 118314720 118314720 1 + G A UCEC 118314712 + 118314692 118314732 41 TTGGACCCAGCAGAACCTTGCTTTCAGGGCACACCTGAATT TTGGACCCAGCAGAACCTTGCTTTCAGGACACACCTGAATT < 41bp 1 0.0397072289042427 1 0.0526699125766754 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314712 chr10:118314720 nonsynonymous SNV 0.864 1 29 hm5C_associated_SNPs_45269 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 90bp
chr10 118314720 118314720 1 + G A UCEC 118314721 + 118314701 118314741 41 GCAGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATT GCAGAACCTTGCTTTCAGGACACACCTGAATTAGTCCGATT < 41bp 1 0.285640781590292 1 0.0373651683330536 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314721 chr10:118314720 nonsynonymous SNV 0.864 1 20 hm5C_associated_SNPs_45270 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 90bp
chr10 118314720 118314720 1 + G A UCEC 118314723 + 118314703 118314743 41 AGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGG AGAACCTTGCTTTCAGGACACACCTGAATTAGTCCGATTGG < 41bp 1 0.566931545771809 1 0.0548935234546661 experiment 0.866136908456381 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314723 chr10:118314720 nonsynonymous SNV 0.864 1 18 hm5C_associated_SNPs_45271 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 90bp
chr10 118314720 118314720 1 + G A UCEC 118314725 + 118314705 118314745 41 AACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGAC AACCTTGCTTTCAGGACACACCTGAATTAGTCCGATTGGAC < 41bp 1 0.243838355442865 1 0.25265908241272 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314725 chr10:118314720 nonsynonymous SNV 0.864 1 16 hm5C_associated_SNPs_45272 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 90bp
chr10 118314720 118314720 1 + G A UCEC 118314726 + 118314706 118314746 41 ACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGACC ACCTTGCTTTCAGGACACACCTGAATTAGTCCGATTGGACC < 41bp 1 0.707646556756123 1 0.35383477807045 experiment 0.584706886487754 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314726 chr10:118314720 nonsynonymous SNV 0.864 1 15 hm5C_associated_SNPs_45273 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 90bp
chr10 118314720 118314720 1 + G A UCEC 118314736 + 118314716 118314756 41 CAGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGC CAGGACACACCTGAATTAGTCCGATTGGACCCCAGCGATGC < 41bp 1 0.360456512602756 1 0.307020425796509 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314736 chr10:118314720 nonsynonymous SNV 0.864 1 5 hm5C_associated_SNPs_45274 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 90bp
chr10 118314720 118314720 1 + G A UCEC 118314737 + 118314717 118314757 41 AGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGCC AGGACACACCTGAATTAGTCCGATTGGACCCCAGCGATGCC < 41bp 1 0.228135850557317 1 0.103887349367142 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314737 chr10:118314720 nonsynonymous SNV 0.864 1 4 hm5C_associated_SNPs_45275 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 90bp
chr5 10391752 10391752 1 + G T UCEC 10391750 + 10391730 10391770 41 TGGGGGAAAACCCTGATGCCCAGGATGACCAGGCAGAAGAG TGGGGGAAAACCCTGATGCCCATGATGACCAGGCAGAAGAG < 41bp 1 0.69392848525688 1 0.376348555088043 experiment 0.612143029486241 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10391750 chr5:10391752 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_45276 0 0 1 0 1 MARCH6 chr5:10391654 3'AG 10391654 Downstream 99bp
chr1 26080049 26080049 1 + G T UCEC 26080043 + 26080023 26080063 41 TTCAACACCCCCACGGGAATCCCAAAGGGCGTGGTGAGCTT TTCAACACCCCCACGGGAATCCCAAATGGCGTGGTGAGCTT < 41bp 1 0.575563822864518 1 0.303464531898499 experiment 0.848872354270964 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26080043 chr1:26080049 nonsynonymous SNV 0.858 1 27 hm5C_associated_SNPs_45277 0 0 0 0 2 MAN1C1 chr1:26079975 3'AG 26079975 Downstream 75bp
chr1 26080049 26080049 1 + G T UCEC 26080043 + 26080023 26080063 41 TTCAACACCCCCACGGGAATCCCAAAGGGCGTGGTGAGCTT TTCAACACCCCCACGGGAATCCCAAATGGCGTGGTGAGCTT < 41bp 1 0.575563822864518 1 0.303464531898499 experiment 0.848872354270964 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26080043 chr1:26080049 nonsynonymous SNV 0.858 1 27 hm5C_associated_SNPs_45277 0 0 0 0 2 MAN1C1 chr1:26080069 5'GT 26080069 Upstream 21bp
chr1 117626693 117626693 1 + A G UCEC 117626677 + 117626657 117626697 41 TCCCATGGAACACTAATCATCTGTCCTGCCTCCCTGATCCA TCCCATGGAACACTAATCATCTGTCCTGCCTCCCTGGTCCA < 41bp 1 0.165659653800578 1 0.0783667862415314 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117626677 chr1:117626693 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_45278 0 0 1 0 1 TTF2 chr1:117626640 3'AG 117626640 Downstream 54bp
chr1 231377134 231377134 1 + T C UCEC 231377115 + 231377095 231377135 41 CCAGACCCCGCCCGGGAAGGCAGCCGCACCATGGAGTCTTC CCAGACCCCGCCCGGGAAGGCAGCCGCACCATGGAGTCTCC < 41bp 1 0.67566660868597 1 0.523629307746887 experiment 0.64866678262806 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231377115 chr1:231377134 nonsynonymous SNV 0.002 0 40 hm5C_associated_SNPs_45279 0 0 1 0 1 GNPAT chr1:231377202 5'GT 231377202 Upstream 69bp
chr1 161179377 161179377 1 + A G UCEC 161179358 + 161179338 161179378 41 CTTGGGGCCATGACCCCTTTCTTCTGGCTGTTTGAAGAAAG CTTGGGGCCATGACCCCTTTCTTCTGGCTGTTTGAAGAAGG < 41bp 1 0.265764766209023 1 0.150936752557755 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161179358 chr1:161179377 nonsynonymous SNV 0.999 5 40 hm5C_associated_SNPs_45280 0 0 1 0 1 NDUFS2 chr1:161179385 5'GT 161179385 Upstream 9bp
chr9 131296145 131296145 1 + C A UCEC 131296139 + 131296119 131296159 41 TCCACCCCAGAGTGGGGGACCTCATTCTTGCTCATCTACAT TCCACCCCAGAGTGGGGGACCTCATTATTGCTCATCTACAT < 41bp 1 0.341005069171083 1 0.0866718888282776 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GLE1 ENSG00000119392 CDS Human protein_coding chr9:131296139 chr9:131296145 nonsynonymous SNV 0.999 4 27 hm5C_associated_SNPs_45282 0 0 1 0 1 GLE1 chr9:131296230 5'GT 131296230 Upstream 86bp
chr12 123880948 123880948 1 + G T UCEC 123880964 + 123880944 123880984 41 CGAAGGAGCTCCAGGAAGAGCAAAGCCGAGCTGCAGGTAGT CGAATGAGCTCCAGGAAGAGCAAAGCCGAGCTGCAGGTAGT < 41bp 1 0.322797007360654 1 0.284079313278198 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KMT5A ENSG00000183955 CDS Human protein_coding chr12:123880964 chr12:123880948 nonsynonymous SNV 1.000 5 5 hm5C_associated_SNPs_45283 0 0 1 0 2 KMT5A chr12:123880892 3'AG 123880892 Downstream 57bp
chr12 123880948 123880948 1 + G T UCEC 123880964 + 123880944 123880984 41 CGAAGGAGCTCCAGGAAGAGCAAAGCCGAGCTGCAGGTAGT CGAATGAGCTCCAGGAAGAGCAAAGCCGAGCTGCAGGTAGT < 41bp 1 0.322797007360654 1 0.284079313278198 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KMT5A ENSG00000183955 CDS Human protein_coding chr12:123880964 chr12:123880948 nonsynonymous SNV 1.000 5 5 hm5C_associated_SNPs_45283 0 0 1 0 2 KMT5A chr12:123880979 5'GT 123880979 Upstream 32bp
chr1 28599958 28599958 1 + G T UCEC 28599956 + 28599936 28599976 41 TGCGGGATGAGGGGACGTCCCAGGAGGAGATGGAGAGCCGC TGCGGGATGAGGGGACGTCCCATGAGGAGATGGAGAGCCGC < 41bp 1 0.796974652901736 1 0.555298984050751 experiment 0.406050694196529 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SESN2 ENSG00000130766 CDS Human protein_coding chr1:28599956 chr1:28599958 nonsynonymous SNV 0.946 2 23 hm5C_associated_SNPs_45284 0 0 1 0 2 SESN2 chr1:28599869 3'AG 28599869 Downstream 90bp
chr1 28599958 28599958 1 + G T UCEC 28599956 + 28599936 28599976 41 TGCGGGATGAGGGGACGTCCCAGGAGGAGATGGAGAGCCGC TGCGGGATGAGGGGACGTCCCATGAGGAGATGGAGAGCCGC < 41bp 1 0.796974652901736 1 0.555298984050751 experiment 0.406050694196529 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SESN2 ENSG00000130766 CDS Human protein_coding chr1:28599956 chr1:28599958 nonsynonymous SNV 0.946 2 23 hm5C_associated_SNPs_45284 0 0 1 0 2 SESN2 chr1:28600019 5'GT 28600019 Upstream 62bp
chr6 33169536 33169536 1 + A G UCEC 33169533 + 33169513 33169553 41 CCTCACCAGGCACTGGGGGCCACAGTGCTGATCTCAGCAGC CCTCACCAGGCACTGGGGGCCACGGTGCTGATCTCAGCAGC < 41bp 1 0.710914357690702 1 0.66612708568573 experiment 0.578171284618596 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC39A7;SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33169533 chr6:33169536 synonymous SNV . 0 24 hm5C_associated_SNPs_45286 0 0 1 0 1 SLC39A7 chr6:33169522 3'AG 33169522 Downstream 15bp
chr4 103500143 103500143 1 + G A UCEC 103500160 + 103500140 103500180 41 CTGGCAGCTTCACAAGGCGCCTGGAACCCGTGGTATCAGAC CTGACAGCTTCACAAGGCGCCTGGAACCCGTGGTATCAGAC < 41bp 1 0.602338700259892 1 0.357259780168533 experiment 0.795322599480215 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103500160 chr4:103500143 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_45287 0 0 1 0 1 NFKB1 chr4:103500196 5'GT 103500196 Upstream 54bp
chr19 8320512 8320512 1 + G A UCEC 8320515 + 8320495 8320535 41 AGCTGTCTCTCCTGGCCGCCCAGTGTGGCCTCACGCTGCAG AGCTGTCTCTCCTGGCCACCCAGTGTGGCCTCACGCTGCAG < 41bp 1 0.60360303323127 1 0.529396176338196 experiment 0.792793933537461 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CERS4 ENSG00000090661 CDS Human protein_coding chr19:8320515 chr19:8320512 nonsynonymous SNV 0.187 0 18 hm5C_associated_SNPs_45288 0 0 1 0 2 CERS4 chr19:8320491 3'AG 8320491 Downstream 22bp
chr19 8320512 8320512 1 + G A UCEC 8320515 + 8320495 8320535 41 AGCTGTCTCTCCTGGCCGCCCAGTGTGGCCTCACGCTGCAG AGCTGTCTCTCCTGGCCACCCAGTGTGGCCTCACGCTGCAG < 41bp 1 0.60360303323127 1 0.529396176338196 experiment 0.792793933537461 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CERS4 ENSG00000090661 CDS Human protein_coding chr19:8320515 chr19:8320512 nonsynonymous SNV 0.187 0 18 hm5C_associated_SNPs_45288 0 0 1 0 2 CERS4 chr19:8320609 5'GT 8320609 Upstream 98bp
chr1 47838748 47838748 1 + C A UCEC 47838752 + 47838732 47838772 41 GGGAAGGCAGATGTATCTTTCGTTCTCTTTTTTGACTGTAA GGGAAGGCAGATGTATATTTCGTTCTCTTTTTTGACTGTAA < 41bp 1 0.149676491345365 1 0.208801805973053 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control CMPK1 ENSG00000162368 CDS Human protein_coding chr1:47838752 chr1:47838748 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_45289 0 0 1 0 1 CMPK1 chr1:47838779 5'GT 47838779 Upstream 32bp
chr10 35854984 35854984 1 + G A UCEC 35854964 + 35854944 35854984 41 TTTGCAGGAACGAGCTAGAGCGACAGTTTCTTGAATTGCTG TTTGCAGGAACGAGCTAGAGCGACAGTTTCTTGAATTGCTA < 41bp 1 0.61192734947329 1 0.337272375822067 experiment 0.776145301053419 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCNY ENSG00000108100 CDS Human protein_coding chr10:35854964 chr10:35854984 synonymous SNV . 0 41 hm5C_associated_SNPs_45290 0 0 1 0 1 CCNY chr10:35854951 3'AG 35854951 Downstream 34bp
chr15 52339184 52339184 1 + G A UCEC 52339181 + 52339161 52339201 41 GATAGGTGACTTTGGTCTTGCACGGATCATGGATCCTCATT GATAGGTGACTTTGGTCTTGCACAGATCATGGATCCTCATT < 41bp 1 0.623793156978293 1 0.0741875767707825 experiment 0.752413686043414 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52339181 chr15:52339184 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_45291 0 0 1 0 1 MAPK6 chr15:52339212 5'GT 52339212 Upstream 29bp
chr19 5908904 5908904 1 + G A UCEC 5908886 + 5908866 5908906 41 ACCTCAGAAGCCACTGTCCACAGCCTGCAGGCCACCGTGCA ACCTCAGAAGCCACTGTCCACAGCCTGCAGGCCACCGTACA < 41bp 1 0.435047796989012 1 0.190032571554184 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VMAC ENSG00000187650 CDS Human protein_coding chr19:5908886 chr19:5908904 synonymous SNV . 0 39 hm5C_associated_SNPs_45301 0 0 0 0 1 VMAC chr19:5908835 3'AG 5908835 Downstream 70bp
chr20 44038655 44038655 1 + T C UCEC 44038672 + 44038652 44038692 41 TCCTCCGACTCCTCCACCAACCTGCATAGCCCAAATCCAAG TCCCCCGACTCCTCCACCAACCTGCATAGCCCAAATCCAAG < 41bp 1 0.0992292163560978 1 0.429748505353928 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DBNDD2 ENSG00000244274 CDS Human protein_coding chr20:44038672 chr20:44038655 nonsynonymous SNV 0.529 2 4 hm5C_associated_SNPs_45302 0 0 1 0 1 DBNDD2 chr20:44038572 3'AG 44038572 Downstream 84bp
chr3 186504022 186504022 1 + A G UCEC 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCGAAT < 41bp 1 0.15248777527213 1 0.112883985042572 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186504022 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_45303 0 0 1 6 2 EIF4A2 chr3:186503953 3'AG 186503953 Downstream 70bp
chr3 186504022 186504022 1 + A G UCEC 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCGAAT < 41bp 1 0.15248777527213 1 0.112883985042572 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186504022 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_45303 0 0 1 6 2 EIF4A2 chr3:186504062 5'GT 186504062 Upstream 41bp
chr1 28862530 28862530 1 + A G UCEC 28862519 + 28862499 28862539 41 CACGTGTACGGCTTCGGCCTCTCCAACTACCATCAGCTTGG CACGTGTACGGCTTCGGCCTCTCCAACTACCGTCAGCTTGG < 41bp 1 0.737075121874874 1 0.907440721988678 experiment 0.525849756250252 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28862519 chr1:28862530 nonsynonymous SNV 0.992 2 32 hm5C_associated_SNPs_45307 0 0 1 0 1 RCC1 chr1:28862538 5'GT 28862538 Upstream 9bp
chr17 37883745 37883745 1 + C T UCEC 37883734 + 37883714 37883754 41 TACAGCGGTACAGTGAGGACCCCACAGTACCCCTGCCCTCT TACAGCGGTACAGTGAGGACCCCACAGTACCTCTGCCCTCT < 41bp 1 0.0678491648098987 1 0.111555606126785 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37883734 chr17:37883745 synonymous SNV . 0 32 hm5C_associated_SNPs_45308 0 0 1 0 1 ERBB2 chr17:37883800 5'GT 37883800 Upstream 56bp
chr7 100470814 100470814 1 + C T UCEC 100470816 + 100470796 100470836 41 GTGTGGGCTGCTGCTCTCCTCTGAGGGCGAGTGTCAGGGCT GTGTGGGCTGCTGCTCTCTTCTGAGGGCGAGTGTCAGGGCT < 41bp 1 0.793776675134013 1 0.860057234764099 experiment 0.412446649731974 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100470816 chr7:100470814 synonymous SNV . 0 19 hm5C_associated_SNPs_45309 0 0 1 0 1 TRIP6 chr7:100470794 3'AG 100470794 Downstream 21bp
chr3 178947161 178947161 1 + T G UCEC 178947150 + 178947130 178947170 41 ACTATTATGCAAATTCAGTGCAAAGGCGGCTTGAAAGGTGC ACTATTATGCAAATTCAGTGCAAAGGCGGCTGGAAAGGTGC < 41bp 1 0.430214219449897 1 0.240055680274963 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178947150 chr3:178947161 nonsynonymous SNV 0.972 3 32 hm5C_associated_SNPs_45310 0 0 0 0 1 PIK3CA chr3:178947230 5'GT 178947230 Upstream 70bp
chr1 156142782 156142782 1 + A G UCEC 156142796 + 156142776 156142816 41 CTTGTCATGTACCTGGGAACCAGTGAGTAAAGAGTTCCGGG CTTGTCGTGTACCTGGGAACCAGTGAGTAAAGAGTTCCGGG < 41bp 1 0.51179701087583 1 0.785355925559998 experiment 0.976405978248339 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156142796 chr1:156142782 nonsynonymous SNV 0.995 1 7 hm5C_associated_SNPs_45312 0 0 0 0 1 SEMA4A chr1:156142797 5'GT 156142797 Upstream 16bp
chr12 51112790 51112790 1 + A G UCEC 51112772 + 51112752 51112792 41 AGAGATCCTACAGTGGCGAGCCCAGGCGACTCCTGACCATG AGAGATCCTACAGTGGCGAGCCCAGGCGACTCCTGACCGTG < 41bp 1 0.192757564705878 1 0.156714230775833 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51112772 chr12:51112790 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_45314 0 0 1 0 2 DIP2B chr12:51112738 3'AG 51112738 Downstream 53bp
chr12 51112790 51112790 1 + A G UCEC 51112772 + 51112752 51112792 41 AGAGATCCTACAGTGGCGAGCCCAGGCGACTCCTGACCATG AGAGATCCTACAGTGGCGAGCCCAGGCGACTCCTGACCGTG < 41bp 1 0.192757564705878 1 0.156714230775833 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51112772 chr12:51112790 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_45314 0 0 1 0 2 DIP2B chr12:51112818 5'GT 51112818 Upstream 29bp
chr12 51112790 51112790 1 + A G UCEC 51112773 + 51112753 51112793 41 GAGATCCTACAGTGGCGAGCCCAGGCGACTCCTGACCATGT GAGATCCTACAGTGGCGAGCCCAGGCGACTCCTGACCGTGT < 41bp 1 0.231752019358531 1 0.434434592723846 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51112773 chr12:51112790 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_45315 0 0 1 0 2 DIP2B chr12:51112738 3'AG 51112738 Downstream 53bp
chr12 51112790 51112790 1 + A G UCEC 51112773 + 51112753 51112793 41 GAGATCCTACAGTGGCGAGCCCAGGCGACTCCTGACCATGT GAGATCCTACAGTGGCGAGCCCAGGCGACTCCTGACCGTGT < 41bp 1 0.231752019358531 1 0.434434592723846 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51112773 chr12:51112790 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_45315 0 0 1 0 2 DIP2B chr12:51112818 5'GT 51112818 Upstream 29bp
chr20 18142496 18142496 1 + A G UCEC 18142508 + 18142488 18142528 41 CCATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCGG CCATCATTGCTGTTGAGGGACTTAGAAAACGAGCAAGTCGG < 41bp 1 0.135268809160747 1 0.0626125931739807 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KAT14 ENSG00000149474 CDS Human protein_coding chr20:18142508 chr20:18142496 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_45316 0 0 0 0 2 KAT14 chr20:18142464 3'AG 18142464 Downstream 33bp
chr20 18142496 18142496 1 + A G UCEC 18142508 + 18142488 18142528 41 CCATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCGG CCATCATTGCTGTTGAGGGACTTAGAAAACGAGCAAGTCGG < 41bp 1 0.135268809160747 1 0.0626125931739807 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KAT14 ENSG00000149474 CDS Human protein_coding chr20:18142508 chr20:18142496 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_45316 0 0 0 0 2 KAT14 chr20:18142467 3'AG 18142467 Downstream 30bp
chr3 184584687 184584687 1 + T A UCEC 184584699 + 184584679 184584719 41 AAGGCTTGTTATCAATCCATCAGTAGCTATGGTGGTCAGAT AAGGCTTGATATCAATCCATCAGTAGCTATGGTGGTCAGAT < 41bp 1 0.208969959820263 1 0.356925755739212 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS8 ENSG00000156931 CDS Human protein_coding chr3:184584699 chr3:184584687 stopgain 0.998 1 9 hm5C_associated_SNPs_45317 0 0 1 0 2 VPS8 chr3:184584664 3'AG 184584664 Downstream 24bp
chr3 184584687 184584687 1 + T A UCEC 184584699 + 184584679 184584719 41 AAGGCTTGTTATCAATCCATCAGTAGCTATGGTGGTCAGAT AAGGCTTGATATCAATCCATCAGTAGCTATGGTGGTCAGAT < 41bp 1 0.208969959820263 1 0.356925755739212 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS8 ENSG00000156931 CDS Human protein_coding chr3:184584699 chr3:184584687 stopgain 0.998 1 9 hm5C_associated_SNPs_45317 0 0 1 0 2 VPS8 chr3:184584738 5'GT 184584738 Upstream 52bp
chr3 128973581 128973581 1 + A G UCEC 128973582 + 128973562 128973602 41 GCGAGCCCTCTGCCAGATCACTGATGTGAGTCGTGCCGGTT GCGAGCCCTCTGCCAGATCGCTGATGTGAGTCGTGCCGGTT < 41bp 1 0.6469934977521 1 0.128329038619995 experiment 0.7060130044958 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COPG1 ENSG00000181789 CDS Human protein_coding chr3:128973582 chr3:128973581 nonsynonymous SNV 0.875 4 20 hm5C_associated_SNPs_45319 0 0 1 0 2 COPG1 chr3:128973511 3'AG 128973511 Downstream 71bp
chr3 128973581 128973581 1 + A G UCEC 128973582 + 128973562 128973602 41 GCGAGCCCTCTGCCAGATCACTGATGTGAGTCGTGCCGGTT GCGAGCCCTCTGCCAGATCGCTGATGTGAGTCGTGCCGGTT < 41bp 1 0.6469934977521 1 0.128329038619995 experiment 0.7060130044958 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COPG1 ENSG00000181789 CDS Human protein_coding chr3:128973582 chr3:128973581 nonsynonymous SNV 0.875 4 20 hm5C_associated_SNPs_45319 0 0 1 0 2 COPG1 chr3:128973586 5'GT 128973586 Upstream 6bp
chr8 98837316 98837316 1 + T C UCEC 98837312 + 98837292 98837332 41 TTGATTAGCTGTGTTTGGAACTGCTACCGATACATCAATGG TTGATTAGCTGTGTTTGGAACTGCCACCGATACATCAATGG < 41bp 1 0.178873904388168 1 0.0903472304344177 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAPTM4B ENSG00000104341 CDS Human protein_coding chr8:98837312 chr8:98837316 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_45320 0 0 1 0 1 LAPTM4B chr8:98837381 5'GT 98837381 Upstream 66bp
chr3 124053178 124053178 1 + T C UCEC 124053164 + 124053144 124053184 41 GCTGCAGCGGCCCCTGAGCCCTGGGAACTCCGAATCCCTCA GCTGCAGCGGCCCCTGAGCCCTGGGAACTCCGAACCCCTCA < 41bp 1 0.675546518070494 1 0.891994953155518 experiment 0.648906963859013 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KALRN ENSG00000160145 CDS Human protein_coding chr3:124053164 chr3:124053178 nonsynonymous SNV 0.972 3 35 hm5C_associated_SNPs_45323 0 0 0 0 1 KALRN chr3:124053112 3'AG 124053112 Downstream 67bp
chr4 7533312 7533312 1 + A G UCEC 7533294 + 7533274 7533314 41 CGTCCTACACCAAGCTCACCCTCCAGCCTGGTGTCACCACC CGTCCTACACCAAGCTCACCCTCCAGCCTGGTGTCACCGCC < 41bp 1 0.632569073053982 1 0.984843611717224 experiment 0.734861853892036 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SORCS2 ENSG00000184985 CDS Human protein_coding chr4:7533294 chr4:7533312 nonsynonymous SNV 0.977 1 39 hm5C_associated_SNPs_45324 0 0 0 0 2 SORCS2 chr4:7533257 3'AG 7533257 Downstream 56bp
chr4 7533312 7533312 1 + A G UCEC 7533294 + 7533274 7533314 41 CGTCCTACACCAAGCTCACCCTCCAGCCTGGTGTCACCACC CGTCCTACACCAAGCTCACCCTCCAGCCTGGTGTCACCGCC < 41bp 1 0.632569073053982 1 0.984843611717224 experiment 0.734861853892036 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SORCS2 ENSG00000184985 CDS Human protein_coding chr4:7533294 chr4:7533312 nonsynonymous SNV 0.977 1 39 hm5C_associated_SNPs_45324 0 0 0 0 2 SORCS2 chr4:7533356 5'GT 7533356 Upstream 45bp
chr15 63866345 63866345 1 + T C UCEC 63866342 + 63866322 63866362 41 CAGAATCTAGAAAGTTTGATCCATTCCTAGGTAAGATATAT CAGAATCTAGAAAGTTTGATCCACTCCTAGGTAAGATATAT < 41bp 1 0.0382137718500345 1 0.0851966738700867 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP3 ENSG00000140455 CDS Human protein_coding chr15:63866342 chr15:63866345 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_45325 0 0 1 4 1 USP3 chr15:63866351 5'GT 63866351 Upstream 7bp
chr5 37022456 37022456 1 + T C UCEC 37022445 + 37022425 37022465 41 GTCGATTTGTCCTTTGTCGACCTCAGCTTGCTGAACAGTAT GTCGATTTGTCCTTTGTCGACCTCAGCTTGCCGAACAGTAT < 41bp 1 0.0890926880587383 1 0.051024466753006 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NIPBL ENSG00000164190 CDS Human protein_coding chr5:37022445 chr5:37022456 synonymous SNV . 0 32 hm5C_associated_SNPs_45326 0 0 1 0 1 NIPBL chr5:37022492 5'GT 37022492 Upstream 37bp
chr1 154207164 154207164 1 + G A UCEC 154207147 + 154207127 154207167 41 ACGGAATCCAATGAGGAAGGCAAAGAAAATCGAGACCGGGA ACGGAATCCAATGAGGAAGGCAAAGAAAATCGAGACCAGGA < 41bp 1 0.41822906615012 1 0.345891237258911 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154207147 chr1:154207164 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_45329 0 0 1 0 1 UBAP2L chr1:154207067 3'AG 154207067 Downstream 98bp
chr19 45490640 45490640 1 + G A UCEC 45490656 + 45490636 45490676 41 TGATGAGTTGTACGAGCAGTCAGATGAGGAGCAGGACTCGG TGATAAGTTGTACGAGCAGTCAGATGAGGAGCAGGACTCGG < 41bp 1 0.666407347390283 1 0.6779865026474 experiment 0.667185305219433 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45490656 chr19:45490640 nonsynonymous SNV 0.164 1 5 hm5C_associated_SNPs_45330 0 0 1 0 1 CLPTM1 chr19:45490681 5'GT 45490681 Upstream 42bp
chr19 45490658 45490658 1 + G A UCEC 45490656 + 45490636 45490676 41 TGATGAGTTGTACGAGCAGTCAGATGAGGAGCAGGACTCGG TGATGAGTTGTACGAGCAGTCAAATGAGGAGCAGGACTCGG < 41bp 1 0.538735070980465 1 0.69463574886322 experiment 0.92252985803907 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45490656 chr19:45490658 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_45331 0 0 1 0 1 CLPTM1 chr19:45490681 5'GT 45490681 Upstream 24bp
chr20 18142514 18142514 1 + A G UCEC 18142508 + 18142488 18142528 41 CCATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCGG CCATCATTACTGTTGAGGGACTTAGAGAACGAGCAAGTCGG < 41bp 1 0.102140071856127 1 0.0413108468055725 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KAT14 ENSG00000149474 CDS Human protein_coding chr20:18142508 chr20:18142514 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_45333 0 0 1 0 2 KAT14 chr20:18142464 3'AG 18142464 Downstream 51bp
chr20 18142514 18142514 1 + A G UCEC 18142508 + 18142488 18142528 41 CCATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCGG CCATCATTACTGTTGAGGGACTTAGAGAACGAGCAAGTCGG < 41bp 1 0.102140071856127 1 0.0413108468055725 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KAT14 ENSG00000149474 CDS Human protein_coding chr20:18142508 chr20:18142514 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_45333 0 0 1 0 2 KAT14 chr20:18142467 3'AG 18142467 Downstream 48bp
chr5 131977956 131977956 1 + C A UCEC 131977975 + 131977955 131977995 41 TCTGAATATGTGGAGAAATTCTACAGGATTAAAAAGAACAT TATGAATATGTGGAGAAATTCTACAGGATTAAAAAGAACAT < 41bp 1 0.68962342497125 1 0.720050573348999 experiment 0.6207531500575 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131977975 chr5:131977956 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_45334 0 0 1 0 1 RAD50 chr5:131977870 3'AG 131977870 Downstream 87bp
chr15 41865270 41865270 1 + G A UCEC 41865260 + 41865240 41865280 41 TTGCCTGCGGCATGGAGTACCTGAGCTCTCGGAACTTCATC TTGCCTGCGGCATGGAGTACCTGAGCTCTCAGAACTTCATC < 41bp 1 0.53275100423705 1 0.12526148557663 experiment 0.934497991525899 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41865260 chr15:41865270 nonsynonymous SNV 0.999 2 31 hm5C_associated_SNPs_45335 0 0 0 0 2 TYRO3 chr15:41865200 3'AG 41865200 Downstream 71bp
chr15 41865270 41865270 1 + G A UCEC 41865260 + 41865240 41865280 41 TTGCCTGCGGCATGGAGTACCTGAGCTCTCGGAACTTCATC TTGCCTGCGGCATGGAGTACCTGAGCTCTCAGAACTTCATC < 41bp 1 0.53275100423705 1 0.12526148557663 experiment 0.934497991525899 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41865260 chr15:41865270 nonsynonymous SNV 0.999 2 31 hm5C_associated_SNPs_45335 0 0 0 0 2 TYRO3 chr15:41865309 5'GT 41865309 Upstream 40bp
chrX 70776896 70776896 1 + G A UCEC 70776893 + 70776873 70776913 41 GAGCCTTGCAGTGTTATACGCGTGCCATCCAAATTAATCCT GAGCCTTGCAGTGTTATACGCGTACCATCCAAATTAATCCT < 41bp 1 0.0943578796415775 1 0.0198173820972443 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70776893 chrX:70776896 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_45336 0 0 1 0 2 OGT chrX:70776802 3'AG 70776802 Downstream 95bp
chrX 70776896 70776896 1 + G A UCEC 70776893 + 70776873 70776913 41 GAGCCTTGCAGTGTTATACGCGTGCCATCCAAATTAATCCT GAGCCTTGCAGTGTTATACGCGTACCATCCAAATTAATCCT < 41bp 1 0.0943578796415775 1 0.0198173820972443 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70776893 chrX:70776896 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_45336 0 0 1 0 2 OGT chrX:70776955 5'GT 70776955 Upstream 60bp
chrX 69354614 69354614 1 + G T UCEC 69354607 + 69354587 69354627 41 GAAAATCACACTGCCAATTCCTCCATGGCTTATCCTAGTCT GAAAATCACACTGCCAATTCCTCCATGTCTTATCCTAGTCT < 41bp 1 0.661521248124234 1 0.879114985466003 experiment 0.676957503751532 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69354607 chrX:69354614 nonsynonymous SNV 0.999 0 28 hm5C_associated_SNPs_45337 0 0 1 0 1 IGBP1 chrX:69354666 5'GT 69354666 Upstream 53bp
chr8 97332509 97332509 1 + A C UCEC 97332495 + 97332475 97332515 41 GTCATTGGTTTCCTGGAGGCCATTGTTTGCATAAAATTTGG GTCATTGGTTTCCTGGAGGCCATTGTTTGCATAACATTTGG < 41bp 1 0.116981284434852 1 0.0771222412586212 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97332495 chr8:97332509 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_45339 0 0 1 0 1 PTDSS1 chr8:97332573 5'GT 97332573 Upstream 65bp
chr12 123880945 123880945 1 + G A UCEC 123880964 + 123880944 123880984 41 CGAAGGAGCTCCAGGAAGAGCAAAGCCGAGCTGCAGGTAGT CAAAGGAGCTCCAGGAAGAGCAAAGCCGAGCTGCAGGTAGT < 41bp 1 0.343082626260412 1 0.393498599529266 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KMT5A ENSG00000183955 CDS Human protein_coding chr12:123880964 chr12:123880945 nonsynonymous SNV 0.997 4 2 hm5C_associated_SNPs_45341 0 0 1 0 2 KMT5A chr12:123880892 3'AG 123880892 Downstream 54bp
chr12 123880945 123880945 1 + G A UCEC 123880964 + 123880944 123880984 41 CGAAGGAGCTCCAGGAAGAGCAAAGCCGAGCTGCAGGTAGT CAAAGGAGCTCCAGGAAGAGCAAAGCCGAGCTGCAGGTAGT < 41bp 1 0.343082626260412 1 0.393498599529266 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KMT5A ENSG00000183955 CDS Human protein_coding chr12:123880964 chr12:123880945 nonsynonymous SNV 0.997 4 2 hm5C_associated_SNPs_45341 0 0 1 0 2 KMT5A chr12:123880979 5'GT 123880979 Upstream 35bp
chr18 74622053 74622053 1 + C T UCEC 74622068 + 74622048 74622088 41 CTCTGCGAGGGCACGTAGACCAGTTTGAAGAGCAGAGCCCT CTCTGTGAGGGCACGTAGACCAGTTTGAAGAGCAGAGCCCT < 41bp 1 0.324578311731258 1 0.344461441040039 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74622068 chr18:74622053 stopgain 0.343 0 6 hm5C_associated_SNPs_45342 0 0 1 0 2 ZNF236 chr18:74622024 3'AG 74622024 Downstream 30bp
chr18 74622053 74622053 1 + C T UCEC 74622068 + 74622048 74622088 41 CTCTGCGAGGGCACGTAGACCAGTTTGAAGAGCAGAGCCCT CTCTGTGAGGGCACGTAGACCAGTTTGAAGAGCAGAGCCCT < 41bp 1 0.324578311731258 1 0.344461441040039 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74622068 chr18:74622053 stopgain 0.343 0 6 hm5C_associated_SNPs_45342 0 0 1 0 2 ZNF236 chr18:74622125 5'GT 74622125 Upstream 73bp
chr9 100410445 100410445 1 + T G UCEC 100410432 + 100410412 100410452 41 GCCTCCTTTTACACCACCTCCTCACACTGAAGATTCAGTGT GCCTCCTTTTACACCACCTCCTCACACTGAAGAGTCAGTGT < 41bp 1 0.172653273077132 1 0.115703046321869 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100410432 chr9:100410445 nonsynonymous SNV 0.991 1 34 hm5C_associated_SNPs_45343 0 0 1 0 1 NCBP1 chr9:100410505 5'GT 100410505 Upstream 61bp
chr20 31019214 31019214 1 + C A UCEC 31019221 + 31019201 31019241 41 GCCCTGATCAACTCTCGGACCTTCCATGCCTTACCATCACA GCCCTGATCAACTATCGGACCTTCCATGCCTTACCATCACA < 41bp 1 0.0711891850823915 1 0.0743148028850555 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31019221 chr20:31019214 nonsynonymous SNV 0.997 3 14 hm5C_associated_SNPs_45344 0 0 1 0 2 ASXL1 chr20:31019124 3'AG 31019124 Downstream 91bp
chr20 31019214 31019214 1 + C A UCEC 31019221 + 31019201 31019241 41 GCCCTGATCAACTCTCGGACCTTCCATGCCTTACCATCACA GCCCTGATCAACTATCGGACCTTCCATGCCTTACCATCACA < 41bp 1 0.0711891850823915 1 0.0743148028850555 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31019221 chr20:31019214 nonsynonymous SNV 0.997 3 14 hm5C_associated_SNPs_45344 0 0 1 0 2 ASXL1 chr20:31019287 5'GT 31019287 Upstream 74bp
chr22 29695805 29695805 1 + G T UCEC 29695816 + 29695796 29695836 41 TGGGAGGAAGAAGAGGAGGACGTGGAGGACCTGGAAAAATG TGGGAGGAATAAGAGGAGGACGTGGAGGACCTGGAAAAATG < 41bp 1 0.5590970743548 1 0.295433938503265 experiment 0.881805851290399 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695816 chr22:29695805 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_45346 0 0 1 0 1 EWSR1 chr22:29695841 5'GT 29695841 Upstream 37bp
chr22 29695805 29695805 1 + G T UCEC 29695825 + 29695805 29695845 41 GAAGAGGAGGACGTGGAGGACCTGGAAAAATGGATAAGTAA TAAGAGGAGGACGTGGAGGACCTGGAAAAATGGATAAGTAA < 41bp 1 0.302993001130738 1 0.260825932025909 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695825 chr22:29695805 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_45347 0 0 1 0 1 EWSR1 chr22:29695841 5'GT 29695841 Upstream 37bp
chr16 78143678 78143678 1 + T A UCEC 78143695 + 78143675 78143715 41 ATTTGCCATACGGATGGGAACAAGAAACTGATGAGAACGGA ATTAGCCATACGGATGGGAACAAGAAACTGATGAGAACGGA < 41bp 1 0.393545459934667 1 0.38224983215332 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WWOX ENSG00000186153 CDS Human protein_coding chr16:78143695 chr16:78143678 stopgain 0.999 1 4 hm5C_associated_SNPs_45348 0 0 1 0 2 WWOX chr16:78143675 3'AG 78143675 Downstream 4bp
chr16 78143678 78143678 1 + T A UCEC 78143695 + 78143675 78143715 41 ATTTGCCATACGGATGGGAACAAGAAACTGATGAGAACGGA ATTAGCCATACGGATGGGAACAAGAAACTGATGAGAACGGA < 41bp 1 0.393545459934667 1 0.38224983215332 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WWOX ENSG00000186153 CDS Human protein_coding chr16:78143695 chr16:78143678 stopgain 0.999 1 4 hm5C_associated_SNPs_45348 0 0 1 0 2 WWOX chr16:78143732 5'GT 78143732 Upstream 55bp
chr15 44673156 44673156 1 + T G UCEC 44673143 + 44673123 44673163 41 CTAAAGCAGGCTACCAAGGACAGAGTCAGTGATTTCCATAA CTAAAGCAGGCTACCAAGGACAGAGTCAGTGATGTCCATAA < 41bp 1 0.505286758709453 1 0.372665584087372 experiment 0.989426482581095 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CASC4 ENSG00000166734 CDS Human protein_coding chr15:44673143 chr15:44673156 nonsynonymous SNV 0.998 0 34 hm5C_associated_SNPs_45349 0 0 1 0 1 CASC4 chr15:44673174 5'GT 44673174 Upstream 19bp
chr1 91980456 91980456 1 + G T UCEC 91980446 + 91980426 91980466 41 AAAAAAGAAGGCTATTTCTACAAAAGTTATGAATAGTGCTG AAAAAAGAAGGCTATTTCTACAAAAGTTATTAATAGTGCTG < 41bp 1 0.636268318614683 1 0.452239722013474 experiment 0.727463362770633 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC7 ENSG00000097046 CDS Human protein_coding chr1:91980446 chr1:91980456 nonsynonymous SNV 0.875 0 31 hm5C_associated_SNPs_45350 0 0 1 0 1 CDC7 chr1:91980554 5'GT 91980554 Upstream 99bp
chr1 154233542 154233542 1 + C T UCEC 154233546 + 154233526 154233566 41 TACTATACAGGGGTCCCGGGCCTCCCCAGCACCTTCCAGTA TACTATACAGGGGTCCTGGGCCTCCCCAGCACCTTCCAGTA < 41bp 1 0.0813348294468761 1 0.0628930926322937 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154233546 chr1:154233542 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_45351 0 0 1 0 1 UBAP2L chr1:154233585 5'GT 154233585 Upstream 44bp
chr8 42927425 42927425 1 + G T UCEC 42927423 + 42927403 42927443 41 GATGCAAAGAATTATCATGCCTGGCAGCATCGACAATGGGT GATGCAAAGAATTATCATGCCTTGCAGCATCGACAATGGGT < 41bp 1 0.183819725081127 1 0.0258871912956238 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FNTA ENSG00000168522;ENSG00000254673 CDS Human other chr8:42927423 chr8:42927425 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_45352 0 0 0 1 1 FNTA chr8:42927450 5'GT 42927450 Upstream 26bp
chr6 4937927 4937927 1 + A T UCEC 4937916 + 4937896 4937936 41 TTGACTTTATTTATTTTATACGACGTCTGACAGATGACAGG TTGACTTTATTTATTTTATACGACGTCTGACTGATGACAGG < 41bp 1 0.422628334295252 1 0.306040227413177 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDYL ENSG00000153046 CDS Human protein_coding chr6:4937916 chr6:4937927 synonymous SNV . 0 32 hm5C_associated_SNPs_45353 0 0 1 0 1 CDYL chr6:4937971 5'GT 4937971 Upstream 45bp
chr8 145169221 145169221 1 + T C UCEC 145169220 + 145169200 145169240 41 CGATCGAGGGCCTGGCCTCGCTGTTGGTGGCCCTGCTGGAG CGATCGAGGGCCTGGCCTCGCCGTTGGTGGCCCTGCTGGAG < 41bp 1 0.184805782060057 1 0.499244958162308 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145169220 chr8:145169221 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_45354 0 0 1 0 1 WDR97 chr8:145169181 3'AG 145169181 Downstream 41bp
chr9 124528993 124528993 1 + C A UCEC 124528998 + 124528978 124529018 41 AAGGTCACCCAGAACCTGGCCAACTTTGCCAAGTGAGTGCC AAGGTCACCCAGAACATGGCCAACTTTGCCAAGTGAGTGCC < 41bp 1 0.1314260916987 1 0.119801968336105 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124528998 chr9:124528993 nonsynonymous SNV 0.997 4 16 hm5C_associated_SNPs_45355 0 0 0 0 1 DAB2IP chr9:124529009 5'GT 124529009 Upstream 17bp
chr13 61034608 61034608 1 + G A UCEC 61034613 + 61034593 61034633 41 CACCAAGGATGCTGCGATTACAGATGACTGATGGTCATATA CACCAAGGATGCTGCAATTACAGATGACTGATGGTCATATA < 41bp 1 0.673306734675695 1 0.719131648540497 experiment 0.65338653064861 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61034613 chr13:61034608 nonsynonymous SNV 0.994 3 16 hm5C_associated_SNPs_45357 0 0 1 0 2 TDRD3 chr13:61034514 3'AG 61034514 Downstream 95bp
chr13 61034608 61034608 1 + G A UCEC 61034613 + 61034593 61034633 41 CACCAAGGATGCTGCGATTACAGATGACTGATGGTCATATA CACCAAGGATGCTGCAATTACAGATGACTGATGGTCATATA < 41bp 1 0.673306734675695 1 0.719131648540497 experiment 0.65338653064861 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61034613 chr13:61034608 nonsynonymous SNV 0.994 3 16 hm5C_associated_SNPs_45357 0 0 1 0 2 TDRD3 chr13:61034674 5'GT 61034674 Upstream 67bp
chr1 87208040 87208040 1 + G A UCEC 87208023 + 87208003 87208043 41 ATCACCTCTCCTTCCAACCTCAGTGACCTTAAGGAGTGTAG ATCACCTCTCCTTCCAACCTCAGTGACCTTAAGGAGTATAG < 41bp 1 0.317295717582067 1 0.191675812005997 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3GLB1 ENSG00000097033 CDS Human protein_coding chr1:87208023 chr1:87208040 nonsynonymous SNV 0.933 0 38 hm5C_associated_SNPs_45359 0 0 1 0 1 SH3GLB1 chr1:87208119 5'GT 87208119 Upstream 80bp
chr15 90617495 90617495 1 + G A UCEC 90617476 + 90617456 90617496 41 AAGGGCAACCTGAGCCGGCACATGAAGGTCAAGCATGGCGT AAGGGCAACCTGAGCCGGCACATGAAGGTCAAGCATGGCAT < 41bp 1 0.483230725780196 1 0.236161440610886 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF710 ENSG00000140548 CDS Human protein_coding chr15:90617476 chr15:90617495 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_45360 0 0 1 0 1 ZNF710 chr15:90617522 5'GT 90617522 Upstream 28bp
chr1 64095665 64095665 1 + T A UCEC 64095685 + 64095665 64095705 41 TGAAGAATATGCAGTTTGCCCTGACCTGAAAGTAGACCTTG AGAAGAATATGCAGTTTGCCCTGACCTGAAAGTAGACCTTG < 41bp 1 0.263454918632184 1 0.0309434831142426 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PGM1 ENSG00000079739 CDS Human protein_coding chr1:64095685 chr1:64095665 synonymous SNV . 0 1 hm5C_associated_SNPs_45361 0 0 0 0 1 PGM1 chr1:64095613 3'AG 64095613 Downstream 53bp
chr7 100867114 100867114 1 + A C UCEC 100867120 + 100867100 100867140 41 TCTGGGGACCCACCAGGAGACCAGGTGAGCATGAGACCTGC TCTGGGGACCCACCCGGAGACCAGGTGAGCATGAGACCTGC < 41bp 1 0.689799834569284 1 0.567653715610504 experiment 0.620400330861431 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100867120 chr7:100867114 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_45362 0 0 1 0 1 ZNHIT1 chr7:100867123 5'GT 100867123 Upstream 10bp
chr7 100867114 100867114 1 + A C UCEC 100867121 + 100867101 100867141 41 CTGGGGACCCACCAGGAGACCAGGTGAGCATGAGACCTGCT CTGGGGACCCACCCGGAGACCAGGTGAGCATGAGACCTGCT < 41bp 1 0.725978700183636 1 0.564188361167908 experiment 0.548042599632729 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100867121 chr7:100867114 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_45363 0 0 1 0 1 ZNHIT1 chr7:100867123 5'GT 100867123 Upstream 10bp
chr4 1017614 1017614 1 + G A UCEC 1017627 + 1017607 1017647 41 CGACCGCGCTTCACACAGCCCTCCAAGATGAGGCGCCGGGT CGACCGCACTTCACACAGCCCTCCAAGATGAGGCGCCGGGT < 41bp 1 0.681952910880017 1 0.951341807842255 experiment 0.636094178239966 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control FGFRL1 ENSG00000127418 CDS Human protein_coding chr4:1017627 chr4:1017614 nonsynonymous SNV 0.721 3 8 hm5C_associated_SNPs_45364 0 0 0 0 1 FGFRL1 chr4:1017605 3'AG 1017605 Downstream 10bp
chr19 4212606 4212606 1 + C A UCEC 4212609 + 4212589 4212629 41 GCTCCCAGGTGCAAGAGCTACAGCAGTTGCTGGTGGAGAGA GCTCCCAGGTGCAAGAGATACAGCAGTTGCTGGTGGAGAGA < 41bp 1 0.799917567398625 1 0.488171309232712 experiment 0.400164865202749 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4212609 chr19:4212606 nonsynonymous SNV 0.997 3 18 hm5C_associated_SNPs_45365 0 0 0 0 2 ANKRD24 chr19:4212597 3'AG 4212597 Downstream 10bp
chr19 4212606 4212606 1 + C A UCEC 4212609 + 4212589 4212629 41 GCTCCCAGGTGCAAGAGCTACAGCAGTTGCTGGTGGAGAGA GCTCCCAGGTGCAAGAGATACAGCAGTTGCTGGTGGAGAGA < 41bp 1 0.799917567398625 1 0.488171309232712 experiment 0.400164865202749 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4212609 chr19:4212606 nonsynonymous SNV 0.997 3 18 hm5C_associated_SNPs_45365 0 0 0 0 2 ANKRD24 chr19:4212695 5'GT 4212695 Upstream 90bp
chr1 22331963 22331963 1 + T C UCEC 22331944 + 22331924 22331964 41 CCTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTG CCTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGCG < 41bp 1 0.170914483314213 1 0.130253523588181 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331944 chr1:22331963 synonymous SNV . 0 40 hm5C_associated_SNPs_45366 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 24bp
chr1 22331963 22331963 1 + T C UCEC 22331944 + 22331924 22331964 41 CCTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTG CCTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGCG < 41bp 1 0.170914483314213 1 0.130253523588181 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331944 chr1:22331963 synonymous SNV . 0 40 hm5C_associated_SNPs_45366 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 75bp
chr1 22331963 22331963 1 + T C UCEC 22331945 + 22331925 22331965 41 CTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGG CTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGCGG < 41bp 1 0.0721468921374328 1 0.156447529792786 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331945 chr1:22331963 synonymous SNV . 0 39 hm5C_associated_SNPs_45367 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 24bp
chr1 22331963 22331963 1 + T C UCEC 22331945 + 22331925 22331965 41 CTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGG CTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGCGG < 41bp 1 0.0721468921374328 1 0.156447529792786 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331945 chr1:22331963 synonymous SNV . 0 39 hm5C_associated_SNPs_45367 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 75bp
chr1 22331963 22331963 1 + T C UCEC 22331949 + 22331929 22331969 41 TGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGGAAGC TGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGCGGAAGC < 41bp 1 0.540960448568681 1 0.371116459369659 experiment 0.918079102862638 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331949 chr1:22331963 synonymous SNV . 0 35 hm5C_associated_SNPs_45368 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 24bp
chr1 22331963 22331963 1 + T C UCEC 22331949 + 22331929 22331969 41 TGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGGAAGC TGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGCGGAAGC < 41bp 1 0.540960448568681 1 0.371116459369659 experiment 0.918079102862638 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331949 chr1:22331963 synonymous SNV . 0 35 hm5C_associated_SNPs_45368 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 75bp
chr1 22331963 22331963 1 + T C UCEC 22331969 + 22331949 22331989 41 CAGTATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGG CAGTATGAGAAAAGCGGAAGCTTCTACCACACGTGTGGCGG < 41bp 1 0.188501252735799 1 0.320574253797531 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331969 chr1:22331963 synonymous SNV . 0 15 hm5C_associated_SNPs_45369 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 24bp
chr1 22331963 22331963 1 + T C UCEC 22331969 + 22331949 22331989 41 CAGTATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGG CAGTATGAGAAAAGCGGAAGCTTCTACCACACGTGTGGCGG < 41bp 1 0.188501252735799 1 0.320574253797531 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331969 chr1:22331963 synonymous SNV . 0 15 hm5C_associated_SNPs_45369 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 75bp
chr1 22331963 22331963 1 + T C UCEC 22331972 + 22331952 22331992 41 TATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAG TATGAGAAAAGCGGAAGCTTCTACCACACGTGTGGCGGTAG < 41bp 1 0.343560825762678 1 0.308292210102081 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331972 chr1:22331963 synonymous SNV . 0 12 hm5C_associated_SNPs_45370 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 24bp
chr1 22331963 22331963 1 + T C UCEC 22331972 + 22331952 22331992 41 TATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAG TATGAGAAAAGCGGAAGCTTCTACCACACGTGTGGCGGTAG < 41bp 1 0.343560825762678 1 0.308292210102081 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331972 chr1:22331963 synonymous SNV . 0 12 hm5C_associated_SNPs_45370 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 75bp
chr1 22331963 22331963 1 + T C UCEC 22331975 + 22331955 22331995 41 GAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCT GAGAAAAGCGGAAGCTTCTACCACACGTGTGGCGGTAGCCT < 41bp 1 0.446617343842511 1 0.0789535045623779 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331975 chr1:22331963 synonymous SNV . 0 9 hm5C_associated_SNPs_45371 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 24bp
chr1 22331963 22331963 1 + T C UCEC 22331975 + 22331955 22331995 41 GAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCT GAGAAAAGCGGAAGCTTCTACCACACGTGTGGCGGTAGCCT < 41bp 1 0.446617343842511 1 0.0789535045623779 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331975 chr1:22331963 synonymous SNV . 0 9 hm5C_associated_SNPs_45371 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 75bp
chr1 22331963 22331963 1 + T C UCEC 22331976 + 22331956 22331996 41 AGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTC AGAAAAGCGGAAGCTTCTACCACACGTGTGGCGGTAGCCTC < 41bp 1 0.617672382173975 1 0.428486764431 experiment 0.76465523565205 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331976 chr1:22331963 synonymous SNV . 0 8 hm5C_associated_SNPs_45372 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 24bp
chr1 22331963 22331963 1 + T C UCEC 22331976 + 22331956 22331996 41 AGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTC AGAAAAGCGGAAGCTTCTACCACACGTGTGGCGGTAGCCTC < 41bp 1 0.617672382173975 1 0.428486764431 experiment 0.76465523565205 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331976 chr1:22331963 synonymous SNV . 0 8 hm5C_associated_SNPs_45372 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 75bp
chr1 22331963 22331963 1 + T C UCEC 22331978 + 22331958 22331998 41 AAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCAT AAAAGCGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCAT < 41bp 1 0.76025668697218 1 0.58301854133606 experiment 0.479486626055641 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331978 chr1:22331963 synonymous SNV . 0 6 hm5C_associated_SNPs_45373 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 24bp
chr1 22331963 22331963 1 + T C UCEC 22331978 + 22331958 22331998 41 AAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCAT AAAAGCGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCAT < 41bp 1 0.76025668697218 1 0.58301854133606 experiment 0.479486626055641 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331978 chr1:22331963 synonymous SNV . 0 6 hm5C_associated_SNPs_45373 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 75bp
chr1 22331963 22331963 1 + T C UCEC 22331980 + 22331960 22332000 41 AAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCATCG AAGCGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCATCG < 41bp 1 0.540507243234627 1 0.184222102165222 experiment 0.918985513530747 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331980 chr1:22331963 synonymous SNV . 0 4 hm5C_associated_SNPs_45374 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 24bp
chr1 22331963 22331963 1 + T C UCEC 22331980 + 22331960 22332000 41 AAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCATCG AAGCGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCATCG < 41bp 1 0.540507243234627 1 0.184222102165222 experiment 0.918985513530747 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331980 chr1:22331963 synonymous SNV . 0 4 hm5C_associated_SNPs_45374 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 75bp
chr12 132328579 132328579 1 + G T UCEC 132328586 + 132328566 132328606 41 CGGCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCCCCA CGGCGCAGCCCGATGAGCCTCCCCTGCTGCCGGAGCCCCCA < 41bp 1 0.292825940245175 1 0.158855825662613 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132328586 chr12:132328579 nonsynonymous SNV 0.340 0 14 hm5C_associated_SNPs_45382 0 0 0 0 2 MMP17 chr12:132328542 3'AG 132328542 Downstream 38bp
chr12 132328579 132328579 1 + G T UCEC 132328586 + 132328566 132328606 41 CGGCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCCCCA CGGCGCAGCCCGATGAGCCTCCCCTGCTGCCGGAGCCCCCA < 41bp 1 0.292825940245175 1 0.158855825662613 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132328586 chr12:132328579 nonsynonymous SNV 0.340 0 14 hm5C_associated_SNPs_45382 0 0 0 0 2 MMP17 chr12:132328626 5'GT 132328626 Upstream 48bp
chr12 132328579 132328579 1 + G T UCEC 132328588 + 132328568 132328608 41 GCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCCCCAGA GCGCAGCCCGATGAGCCTCCCCTGCTGCCGGAGCCCCCAGA < 41bp 1 0.183456376775315 1 0.0936098396778107 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132328588 chr12:132328579 nonsynonymous SNV 0.340 0 12 hm5C_associated_SNPs_45383 0 0 0 0 2 MMP17 chr12:132328542 3'AG 132328542 Downstream 38bp
chr12 132328579 132328579 1 + G T UCEC 132328588 + 132328568 132328608 41 GCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCCCCAGA GCGCAGCCCGATGAGCCTCCCCTGCTGCCGGAGCCCCCAGA < 41bp 1 0.183456376775315 1 0.0936098396778107 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132328588 chr12:132328579 nonsynonymous SNV 0.340 0 12 hm5C_associated_SNPs_45383 0 0 0 0 2 MMP17 chr12:132328626 5'GT 132328626 Upstream 48bp
chr7 73770902 73770902 1 + C T UCEC 73770922 + 73770902 73770942 41 CGTCAGCTCTGTGGCCTCCTCCGTGGGGGGTCGGCCCAGCC TGTCAGCTCTGTGGCCTCCTCCGTGGGGGGTCGGCCCAGCC < 41bp 1 0.28356233108162 1 0.818400740623474 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73770922 chr7:73770902 synonymous SNV . 0 1 hm5C_associated_SNPs_45385 0 0 0 0 1 CLIP2 chr7:73770953 5'GT 73770953 Upstream 52bp
chr11 63676423 63676423 1 + G A UCEC 63676421 + 63676401 63676441 41 GAGGCCAAGCCCCGCTCCCTCCGCTTCACGTGGAGTATGAA GAGGCCAAGCCCCGCTCCCTCCACTTCACGTGGAGTATGAA < 41bp 1 0.078871680863658 1 0.247416019439697 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MARK2 ENSG00000072518 CDS Human protein_coding chr11:63676421 chr11:63676423 nonsynonymous SNV 0.875 4 23 hm5C_associated_SNPs_45386 0 0 1 0 1 MARK2 chr11:63676349 3'AG 63676349 Downstream 75bp
chr3 127394848 127394848 1 + C T UCEC 127394864 + 127394844 127394884 41 TGAGCGCTGCCTCTATGGGGCACTGAGTGACCCCATCCGCC TGAGTGCTGCCTCTATGGGGCACTGAGTGACCCCATCCGCC < 41bp 1 0.402884137660139 1 0.037157267332077 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127394864 chr3:127394848 nonsynonymous SNV 0.988 5 5 hm5C_associated_SNPs_45387 0 0 0 0 1 ABTB1 chr3:127394813 3'AG 127394813 Downstream 36bp
chr1 151236409 151236409 1 + A C UCEC 151236410 + 151236390 151236430 41 TGACTGTGAAGTGCTGACCACACTCACCCCAGACACTGGCC TGACTGTGAAGTGCTGACCCCACTCACCCCAGACACTGGCC < 41bp 1 0.118366693282894 1 0.0996169745922089 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151236410 chr1:151236409 nonsynonymous SNV 0.997 4 20 hm5C_associated_SNPs_45390 0 0 1 0 2 PSMD4 chr1:151236390 3'AG 151236390 Downstream 20bp
chr1 151236409 151236409 1 + A C UCEC 151236410 + 151236390 151236430 41 TGACTGTGAAGTGCTGACCACACTCACCCCAGACACTGGCC TGACTGTGAAGTGCTGACCCCACTCACCCCAGACACTGGCC < 41bp 1 0.118366693282894 1 0.0996169745922089 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151236410 chr1:151236409 nonsynonymous SNV 0.997 4 20 hm5C_associated_SNPs_45390 0 0 1 0 2 PSMD4 chr1:151236504 5'GT 151236504 Upstream 96bp
chr17 27187487 27187487 1 + G T UCEC 27187506 + 27187486 27187526 41 AGATAGCACAGGAGGCAGGCCATGACCTCATGGACATCTTC ATATAGCACAGGAGGCAGGCCATGACCTCATGGACATCTTC < 41bp 1 0.589432312335166 1 0.0752125084400177 experiment 0.821135375329668 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ERAL1 ENSG00000132591 CDS Human protein_coding chr17:27187506 chr17:27187487 nonsynonymous SNV 0.843 1 2 hm5C_associated_SNPs_45391 0 0 1 0 1 ERAL1 chr17:27187449 3'AG 27187449 Downstream 39bp
chr4 153802308 153802308 1 + A G UCEC 153802310 + 153802290 153802330 41 TTGGAGATGCATTTGCTGACCTGAGTTTGAAGTCACTAGAA TTGGAGATGCATTTGCTGGCCTGAGTTTGAAGTCACTAGAA < 41bp 1 0.600854893197455 1 0.591535985469818 experiment 0.79829021360509 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARFIP1 ENSG00000164144 CDS Human protein_coding chr4:153802310 chr4:153802308 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_45392 0 0 0 0 1 ARFIP1 chr4:153802336 5'GT 153802336 Upstream 29bp
chr1 65684545 65684545 1 + G A UCEC 65684546 + 65684526 65684566 41 CTTAAAGATCGTCTCAGCCGCCGTTGGATTCACCCTCCTAG CTTAAAGATCGTCTCAGCCACCGTTGGATTCACCCTCCTAG < 41bp 1 0.105020434084824 1 0.108126044273376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AK4 ENSG00000162433 CDS Human protein_coding chr1:65684546 chr1:65684545 nonsynonymous SNV 0.928 0 20 hm5C_associated_SNPs_45393 0 0 0 0 1 AK4 chr1:65684609 5'GT 65684609 Upstream 65bp
chr3 23960784 23960784 1 + A G UCEC 23960787 + 23960767 23960807 41 TGAGGTTATCCTCATTGATCCATTCCATAAAGCTATCAGAA TGAGGTTATCCTCATTGGTCCATTCCATAAAGCTATCAGAA < 41bp 1 0.010783460172338 1 0.111238062381744 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 CDS Human protein_coding chr3:23960787 chr3:23960784 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_45394 0 0 0 0 2 RPL15 chr3:23960687 3'AG 23960687 Downstream 98bp
chr3 23960784 23960784 1 + A G UCEC 23960787 + 23960767 23960807 41 TGAGGTTATCCTCATTGATCCATTCCATAAAGCTATCAGAA TGAGGTTATCCTCATTGGTCCATTCCATAAAGCTATCAGAA < 41bp 1 0.010783460172338 1 0.111238062381744 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 CDS Human protein_coding chr3:23960787 chr3:23960784 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_45394 0 0 0 0 2 RPL15 chr3:23960719 3'AG 23960719 Downstream 66bp
chr10 133761098 133761098 1 + C T UCEC 133761091 + 133761071 133761111 41 CTTCTCAGAAATAATTTCATCCATATCCGATGTAAAATTCA CTTCTCAGAAATAATTTCATCCATATCTGATGTAAAATTCA < 41bp 1 0.153133777277877 1 0.221312642097473 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R2D ENSG00000175470 CDS Human protein_coding chr10:133761091 chr10:133761098 synonymous SNV . 0 28 hm5C_associated_SNPs_45395 0 0 1 0 1 PPP2R2D chr10:133761034 3'AG 133761034 Downstream 65bp
chrX 40996139 40996139 1 + T G UCEC 40996126 + 40996106 40996146 41 AGTTGTCCCAAGACTGGTTTCCACTTTTAGAACTTCTTGCC AGTTGTCCCAAGACTGGTTTCCACTTTTAGAACGTCTTGCC < 41bp 1 0.133783442496302 1 0.377118170261383 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:40996126 chrX:40996139 nonsynonymous SNV 0.999 4 34 hm5C_associated_SNPs_45396 0 0 1 0 1 USP9X chrX:40996057 3'AG 40996057 Downstream 83bp
chr1 145517317 145517317 1 + G T UCEC 145517304 + 145517284 145517324 41 ATGCTTGCTCTCTTCTTGGCCATGCGCTGCAGAGGCATGGA ATGCTTGCTCTCTTCTTGGCCATGCGCTGCAGATGCATGGA < 41bp 1 0.11198349021362 1 0.292532920837402 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PEX11B ENSG00000131779 CDS Human protein_coding chr1:145517304 chr1:145517317 nonsynonymous SNV . 0 34 hm5C_associated_SNPs_45397 0 0 1 0 2 PEX11B chr1:145517273 3'AG 145517273 Downstream 45bp
chr1 145517317 145517317 1 + G T UCEC 145517304 + 145517284 145517324 41 ATGCTTGCTCTCTTCTTGGCCATGCGCTGCAGAGGCATGGA ATGCTTGCTCTCTTCTTGGCCATGCGCTGCAGATGCATGGA < 41bp 1 0.11198349021362 1 0.292532920837402 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PEX11B ENSG00000131779 CDS Human protein_coding chr1:145517304 chr1:145517317 nonsynonymous SNV . 0 34 hm5C_associated_SNPs_45397 0 0 1 0 2 PEX11B chr1:145517283 3'AG 145517283 Downstream 35bp
chr19 12924224 12924224 1 + C T UCEC 12924210 + 12924190 12924230 41 CTACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTT CTACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCTGTTCTT < 41bp 1 0.332137589734608 1 0.0452612638473511 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924210 chr19:12924224 nonsynonymous SNV 0.001 3 35 hm5C_associated_SNPs_45398 0 0 1 0 1 RNASEH2A chr19:12924142 3'AG 12924142 Downstream 83bp
chr19 12924224 12924224 1 + C T UCEC 12924211 + 12924191 12924231 41 TACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTTC TACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCTGTTCTTC < 41bp 1 0.0975549303653673 1 0.0388606786727905 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924211 chr19:12924224 nonsynonymous SNV 0.001 3 34 hm5C_associated_SNPs_45399 0 0 1 0 1 RNASEH2A chr19:12924142 3'AG 12924142 Downstream 83bp
chr19 12924224 12924224 1 + C T UCEC 12924232 + 12924212 12924252 41 CAAGCCCGTCCCCGTTCTTCCCACCGATATTTCCTGGAACG CAAGCCCGTCCCTGTTCTTCCCACCGATATTTCCTGGAACG < 41bp 1 0.15296346225012 1 0.0705824494361877 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924232 chr19:12924224 nonsynonymous SNV 0.001 3 13 hm5C_associated_SNPs_45400 0 0 1 0 1 RNASEH2A chr19:12924142 3'AG 12924142 Downstream 83bp
chr3 126739157 126739157 1 + C T UCEC 126739145 + 126739125 126739165 41 ACATATGCCATGCGGGTGCTCTTTCCTGGGATCGAGGACCA ACATATGCCATGCGGGTGCTCTTTCCTGGGATTGAGGACCA < 41bp 1 0.0691010718963711 1 0.182533651590347 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126739145 chr3:126739157 synonymous SNV . 0 33 hm5C_associated_SNPs_45401 0 0 1 0 1 PLXNA1 chr3:126739187 5'GT 126739187 Upstream 31bp
chr8 145065447 145065447 1 + C A UCEC 145065439 + 145065419 145065459 41 TCTGGGGACAACTATCCTCCCCCCAACCCTGGATATCCGGG TCTGGGGACAACTATCCTCCCCCCAACCATGGATATCCGGG < 41bp 1 0.396925928905938 1 0.170496791601181 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065439 chr8:145065447 nonsynonymous SNV 0.748 1 29 hm5C_associated_SNPs_45402 0 0 1 0 1 GRINA chr8:145065368 3'AG 145065368 Downstream 80bp
chr2 220500016 220500016 1 + G T UCEC 220500010 + 220499990 220500030 41 CAGCTGTTTCATGAGGCTGCCTACCAGGCAGATGACCGGCA CAGCTGTTTCATGAGGCTGCCTACCATGCAGATGACCGGCA < 41bp 1 0.10032969569473 1 0.0995874106884003 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220500010 chr2:220500016 nonsynonymous SNV 0.981 1 27 hm5C_associated_SNPs_45403 0 0 0 0 1 SLC4A3 chr2:220499993 3'AG 220499993 Downstream 24bp
chr6 159086571 159086571 1 + C T UCEC 159086565 + 159086545 159086585 41 GGCGCCGTGTGCCGGGGCTGCAGCCACCGCGTGTGTGCCCA GGCGCCGTGTGCCGGGGCTGCAGCCATCGCGTGTGTGCCCA < 41bp 1 0.688287090344719 1 0.463417112827301 experiment 0.623425819310562 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159086565 chr6:159086571 synonymous SNV . 0 27 hm5C_associated_SNPs_45404 0 0 0 0 1 SYTL3 chr6:159086645 5'GT 159086645 Upstream 75bp
chr17 78349653 78349653 1 + C T UCEC 78349659 + 78349639 78349679 41 CCCACAATGCAAGCCTCCACCCCACGCCAGAGGTGAGTAAC CCCACAATGCAAGCTTCCACCCCACGCCAGAGGTGAGTAAC < 41bp 1 0.0246435188940108 1 0.147076845169067 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78349659 chr17:78349653 nonsynonymous SNV 0.075 0 15 hm5C_associated_SNPs_45406 0 0 1 0 2 RNF213 chr17:78349560 3'AG 78349560 Downstream 94bp
chr17 78349653 78349653 1 + C T UCEC 78349659 + 78349639 78349679 41 CCCACAATGCAAGCCTCCACCCCACGCCAGAGGTGAGTAAC CCCACAATGCAAGCTTCCACCCCACGCCAGAGGTGAGTAAC < 41bp 1 0.0246435188940108 1 0.147076845169067 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78349659 chr17:78349653 nonsynonymous SNV 0.075 0 15 hm5C_associated_SNPs_45406 0 0 1 0 2 RNF213 chr17:78349670 5'GT 78349670 Upstream 18bp
chr15 69747822 69747822 1 + C T UCEC 69747803 + 69747783 69747823 41 GGAAGCAAAGAAAGAAGAATCCGAGGAGTCTGATGATGACA GGAAGCAAAGAAAGAAGAATCCGAGGAGTCTGATGATGATA < 41bp 1 0.37873107504791 1 0.494189321994781 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747803 chr15:69747822 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_45408 0 0 1 0 1 RPLP1 chr15:69747767 3'AG 69747767 Downstream 56bp
chr1 150530030 150530030 1 + G A UCEC 150530042 + 150530022 150530062 41 GGATGAACGCAGCTGTGCCGCGGGTGCCAGGCCCCCAGCCT GGATGAACACAGCTGTGCCGCGGGTGCCAGGCCCCCAGCCT < 41bp 1 0.791416141593547 1 0.913161277770996 experiment 0.417167716812906 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control ADAMTSL4 ENSG00000143382 CDS Human protein_coding chr1:150530042 chr1:150530030 nonsynonymous SNV 0.329 0 9 hm5C_associated_SNPs_45409 0 0 1 0 2 ADAMTSL4 chr1:150529970 3'AG 150529970 Downstream 61bp
chr1 150530030 150530030 1 + G A UCEC 150530042 + 150530022 150530062 41 GGATGAACGCAGCTGTGCCGCGGGTGCCAGGCCCCCAGCCT GGATGAACACAGCTGTGCCGCGGGTGCCAGGCCCCCAGCCT < 41bp 1 0.791416141593547 1 0.913161277770996 experiment 0.417167716812906 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control ADAMTSL4 ENSG00000143382 CDS Human protein_coding chr1:150530042 chr1:150530030 nonsynonymous SNV 0.329 0 9 hm5C_associated_SNPs_45409 0 0 1 0 2 ADAMTSL4 chr1:150530099 5'GT 150530099 Upstream 70bp
chr19 7670117 7670117 1 + G A UCEC 7670120 + 7670100 7670140 41 ATGCCCCCACAGAGCACGTGCCCCCGGAGCTGTGGGAGCCC ATGCCCCCACAGAGCACATGCCCCCGGAGCTGTGGGAGCCC < 41bp 1 0.0913073162615721 1 0.0542516708374023 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7670120 chr19:7670117 nonsynonymous SNV 0.994 4 18 hm5C_associated_SNPs_45419 0 0 1 0 1 CAMSAP3 chr19:7670112 3'AG 7670112 Downstream 6bp
chr19 7670117 7670117 1 + G A UCEC 7670124 + 7670104 7670144 41 CCCCACAGAGCACGTGCCCCCGGAGCTGTGGGAGCCCTTCT CCCCACAGAGCACATGCCCCCGGAGCTGTGGGAGCCCTTCT < 41bp 1 0.51305905229605 1 0.805420994758606 experiment 0.973881895407901 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7670124 chr19:7670117 nonsynonymous SNV 0.994 4 14 hm5C_associated_SNPs_45420 0 0 1 0 1 CAMSAP3 chr19:7670112 3'AG 7670112 Downstream 6bp
chr9 139975208 139975208 1 + G A UCEC 139975202 + 139975182 139975222 41 CCCCACTGAAGAACGCAGAGCCAGCCGACAGGGACAGTCCC CCCCACTGAAGAACGCAGAGCCAGCCAACAGGGACAGTCCC < 41bp 1 0.0776768220458173 1 0.680422902107239 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139975202 chr9:139975208 nonsynonymous SNV 0.032 0 27 hm5C_associated_SNPs_45421 0 0 1 0 1 UAP1L1 chr9:139975141 3'AG 139975141 Downstream 68bp
chr9 139975208 139975208 1 + G A UCEC 139975203 + 139975183 139975223 41 CCCACTGAAGAACGCAGAGCCAGCCGACAGGGACAGTCCCC CCCACTGAAGAACGCAGAGCCAGCCAACAGGGACAGTCCCC < 41bp 1 0.30252608559624 1 0.43056446313858 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139975203 chr9:139975208 nonsynonymous SNV 0.032 0 26 hm5C_associated_SNPs_45422 0 0 1 0 1 UAP1L1 chr9:139975141 3'AG 139975141 Downstream 68bp
chr1 230822710 230822710 1 + T C UCEC 230822730 + 230822710 230822750 41 TCCCAAGGAGATCAAGAAACCTTTGGTAACTGGTAGCAAAG CCCCAAGGAGATCAAGAAACCTTTGGTAACTGGTAGCAAAG < 41bp 1 0.28098443110648 1 0.0886075794696808 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COG2 ENSG00000135775 CDS Human protein_coding chr1:230822730 chr1:230822710 synonymous SNV . 0 1 hm5C_associated_SNPs_45423 0 0 0 0 1 COG2 chr1:230822681 3'AG 230822681 Downstream 30bp
chr2 109347859 109347859 1 + G A UCEC 109347873 + 109347853 109347893 41 ACTGATGGAAGAGCAAAATACTGGCTTGAAAGAGCAGCCAA ACTGATAGAAGAGCAAAATACTGGCTTGAAAGAGCAGCCAA < 41bp 1 0.696940297710583 1 0.317403644323349 experiment 0.606119404578833 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347873 chr2:109347859 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_45424 0 0 1 0 1 RANBP2 chr2:109347930 5'GT 109347930 Upstream 72bp
chr11 473952 473952 1 + C T UCEC 473956 + 473936 473976 41 TCACACAAGCTAAAGACGGGCCATTTTCCAGACCTCATCCA TCACACAAGCTAAAGATGGGCCATTTTCCAGACCTCATCCA < 41bp 1 0.0321705154388437 1 0.0253819823265076 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTDSS2 ENSG00000174915 CDS Human protein_coding chr11:473956 chr11:473952 synonymous SNV . 0 17 hm5C_associated_SNPs_45425 0 0 0 0 2 PTDSS2 chr11:473895 3'AG 473895 Downstream 58bp
chr11 473952 473952 1 + C T UCEC 473956 + 473936 473976 41 TCACACAAGCTAAAGACGGGCCATTTTCCAGACCTCATCCA TCACACAAGCTAAAGATGGGCCATTTTCCAGACCTCATCCA < 41bp 1 0.0321705154388437 1 0.0253819823265076 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTDSS2 ENSG00000174915 CDS Human protein_coding chr11:473956 chr11:473952 synonymous SNV . 0 17 hm5C_associated_SNPs_45425 0 0 0 0 2 PTDSS2 chr11:473977 5'GT 473977 Upstream 26bp
chr10 115485146 115485146 1 + C T UCEC 115485145 + 115485125 115485165 41 TGAAGAGGACCATACAAATGCCGCCTGCTTCGCCTGCATCC TGAAGAGGACCATACAAATGCTGCCTGCTTCGCCTGCATCC < 41bp 1 0.484121035270396 1 0.123375773429871 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115485145 chr10:115485146 synonymous SNV . 0 22 hm5C_associated_SNPs_45430 0 0 0 0 2 CASP7 chr10:115485121 3'AG 115485121 Downstream 26bp
chr10 115485146 115485146 1 + C T UCEC 115485145 + 115485125 115485165 41 TGAAGAGGACCATACAAATGCCGCCTGCTTCGCCTGCATCC TGAAGAGGACCATACAAATGCTGCCTGCTTCGCCTGCATCC < 41bp 1 0.484121035270396 1 0.123375773429871 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115485145 chr10:115485146 synonymous SNV . 0 22 hm5C_associated_SNPs_45430 0 0 0 0 2 CASP7 chr10:115485188 5'GT 115485188 Upstream 43bp
chr5 176868828 176868828 1 + G A UCEC 176868832 + 176868812 176868852 41 CCAGCAGTTGGCGGTAGCAGCTACTCCGAGCGCCGTTTACA CCAGCAGTTGGCGGTAACAGCTACTCCGAGCGCCGTTTACA < 41bp 1 0.281919958810214 1 0.080486923456192 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GRK6 ENSG00000198055 CDS Human protein_coding chr5:176868832 chr5:176868828 synonymous SNV . 0 17 hm5C_associated_SNPs_45432 0 0 1 0 1 GRK6 chr5:176868738 3'AG 176868738 Downstream 91bp
chrX 133547558 133547558 1 + G T UCEC 133547561 + 133547541 133547581 41 AATGAACATGAACTGGAGCCCTCATCACCTAAAAGTAAAAA AATGAACATGAACTGGATCCCTCATCACCTAAAAGTAAAAA < 41bp 1 0.215250403726068 1 0.132240176200867 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF6 ENSG00000156531 CDS Human protein_coding chrX:133547561 chrX:133547558 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_45433 0 0 1 0 2 PHF6 chrX:133547518 3'AG 133547518 Downstream 41bp
chrX 133547558 133547558 1 + G T UCEC 133547561 + 133547541 133547581 41 AATGAACATGAACTGGAGCCCTCATCACCTAAAAGTAAAAA AATGAACATGAACTGGATCCCTCATCACCTAAAAGTAAAAA < 41bp 1 0.215250403726068 1 0.132240176200867 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF6 ENSG00000156531 CDS Human protein_coding chrX:133547561 chrX:133547558 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_45433 0 0 1 0 2 PHF6 chrX:133547521 3'AG 133547521 Downstream 38bp
chr6 44218112 44218112 1 + G T UCEC 44218121 + 44218101 44218141 41 ATAAAGATGATGAAGAAAAACCCAAGATCGAAGATGTGGGT ATAAAGATGATTAAGAAAAACCCAAGATCGAAGATGTGGGT < 41bp 1 0.473931419888377 1 0.173278719186783 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44218121 chr6:44218112 stopgain 0.959 0 12 hm5C_associated_SNPs_45435 0 0 1 0 1 HSP90AB1 chr6:44218028 3'AG 44218028 Downstream 85bp
chr8 32613923 32613923 1 + A C UCEC 32613925 + 32613905 32613945 41 CCTTTCTTATGTCCAGGAAACAGCGGAAAAAGCTGCATGAC CCTTTCTTATGTCCAGGACACAGCGGAAAAAGCTGCATGAC < 41bp 1 0.55725613789949 1 0.463322073221207 experiment 0.88548772420102 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NRG1 ENSG00000157168 CDS Human protein_coding chr8:32613925 chr8:32613923 nonsynonymous SNV 0.967 3 19 hm5C_associated_SNPs_45436 0 0 0 0 1 NRG1 chr8:32613921 3'AG 32613921 Downstream 3bp
chr2 120125830 120125830 1 + C T UCEC 120125835 + 120125815 120125855 41 TCGGATGAGGAGATGCTGTTCATCTATGGCCACTACAAACA TCGGATGAGGAGATGTTGTTCATCTATGGCCACTACAAACA < 41bp 1 0.291760721279525 1 0.0611684024333954 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DBI ENSG00000155368 CDS Human protein_coding chr2:120125835 chr2:120125830 synonymous SNV . 0 16 hm5C_associated_SNPs_45438 0 0 1 1 2 DBI chr2:120125764 3'AG 120125764 Downstream 67bp
chr2 120125830 120125830 1 + C T UCEC 120125835 + 120125815 120125855 41 TCGGATGAGGAGATGCTGTTCATCTATGGCCACTACAAACA TCGGATGAGGAGATGTTGTTCATCTATGGCCACTACAAACA < 41bp 1 0.291760721279525 1 0.0611684024333954 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DBI ENSG00000155368 CDS Human protein_coding chr2:120125835 chr2:120125830 synonymous SNV . 0 16 hm5C_associated_SNPs_45438 0 0 1 1 2 DBI chr2:120125881 5'GT 120125881 Upstream 52bp
chr2 113277946 113277946 1 + C T UCEC 113277937 + 113277917 113277957 41 TTCCAGCTCTTCGGCTTTGACTTCATGGTCGATGAGGAGCT TTCCAGCTCTTCGGCTTTGACTTCATGGTTGATGAGGAGCT < 41bp 1 0.75202587791663 1 0.761254131793976 experiment 0.49594824416674 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113277937 chr2:113277946 synonymous SNV . 0 30 hm5C_associated_SNPs_45439 0 0 1 0 2 TTL chr2:113277859 3'AG 113277859 Downstream 88bp
chr2 113277946 113277946 1 + C T UCEC 113277937 + 113277917 113277957 41 TTCCAGCTCTTCGGCTTTGACTTCATGGTCGATGAGGAGCT TTCCAGCTCTTCGGCTTTGACTTCATGGTTGATGAGGAGCT < 41bp 1 0.75202587791663 1 0.761254131793976 experiment 0.49594824416674 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113277937 chr2:113277946 synonymous SNV . 0 30 hm5C_associated_SNPs_45439 0 0 1 0 2 TTL chr2:113278002 5'GT 113278002 Upstream 57bp
chr17 79425689 79425689 1 + G A UCEC 79425696 + 79425676 79425716 41 GGCCACACGCAACGCCAAGGCCATCCTGGGGAAGGGCCGGA GGCCACACGCAACACCAAGGCCATCCTGGGGAAGGGCCGGA < 41bp 1 0.0168193110388035 1 0.0278404951095581 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79425696 chr17:79425689 nonsynonymous SNV 0.945 0 14 hm5C_associated_SNPs_45440 0 0 0 0 2 BAHCC1 chr17:79425647 3'AG 79425647 Downstream 43bp
chr17 79425689 79425689 1 + G A UCEC 79425696 + 79425676 79425716 41 GGCCACACGCAACGCCAAGGCCATCCTGGGGAAGGGCCGGA GGCCACACGCAACACCAAGGCCATCCTGGGGAAGGGCCGGA < 41bp 1 0.0168193110388035 1 0.0278404951095581 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79425696 chr17:79425689 nonsynonymous SNV 0.945 0 14 hm5C_associated_SNPs_45440 0 0 0 0 2 BAHCC1 chr17:79425751 5'GT 79425751 Upstream 63bp
chr9 131843467 131843467 1 + C G UCEC 131843453 + 131843433 131843473 41 CGCTCCCCGCTTCATGGCGGCCGGTGACCCTCACCCACGTC CGCTCCCCGCTTCATGGCGGCCGGTGACCCTCACGCACGTC < 41bp 1 0.314325971217863 1 0.332882195711136 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131843453 chr9:131843467 synonymous SNV . 0 35 hm5C_associated_SNPs_45446 0 0 1 0 1 DOLPP1 chr9:131843486 5'GT 131843486 Upstream 20bp
chr16 89759814 89759814 1 + G A UCEC 89759823 + 89759803 89759843 41 CAGCGGATTTCGGCCTGGCCCGGGCCTATGGTGTCCCAGTA CAGCGGATTTCAGCCTGGCCCGGGCCTATGGTGTCCCAGTA < 41bp 1 0.569066288647091 1 0.813974380493164 experiment 0.861867422705818 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CDK10 ENSG00000185324 CDS Human protein_coding chr16:89759823 chr16:89759814 nonsynonymous SNV 0.970 5 12 hm5C_associated_SNPs_45447 0 0 1 0 2 CDK10 chr16:89759806 3'AG 89759806 Downstream 9bp
chr16 89759814 89759814 1 + G A UCEC 89759823 + 89759803 89759843 41 CAGCGGATTTCGGCCTGGCCCGGGCCTATGGTGTCCCAGTA CAGCGGATTTCAGCCTGGCCCGGGCCTATGGTGTCCCAGTA < 41bp 1 0.569066288647091 1 0.813974380493164 experiment 0.861867422705818 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CDK10 ENSG00000185324 CDS Human protein_coding chr16:89759823 chr16:89759814 nonsynonymous SNV 0.970 5 12 hm5C_associated_SNPs_45447 0 0 1 0 2 CDK10 chr16:89759875 5'GT 89759875 Upstream 62bp
chr7 43840158 43840158 1 + G A UCEC 43840161 + 43840141 43840181 41 GACCTGCTGAAAGGGTCGCTCCTCTTCACAGGTCAGTGCTA GACCTGCTGAAAGGGTCACTCCTCTTCACAGGTCAGTGCTA < 41bp 1 0.162213202449903 1 0.0747706592082977 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BLVRA ENSG00000106605 CDS Human protein_coding chr7:43840161 chr7:43840158 synonymous SNV . 0 18 hm5C_associated_SNPs_45448 0 0 1 0 2 BLVRA chr7:43840064 3'AG 43840064 Downstream 95bp
chr7 43840158 43840158 1 + G A UCEC 43840161 + 43840141 43840181 41 GACCTGCTGAAAGGGTCGCTCCTCTTCACAGGTCAGTGCTA GACCTGCTGAAAGGGTCACTCCTCTTCACAGGTCAGTGCTA < 41bp 1 0.162213202449903 1 0.0747706592082977 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BLVRA ENSG00000106605 CDS Human protein_coding chr7:43840161 chr7:43840158 synonymous SNV . 0 18 hm5C_associated_SNPs_45448 0 0 1 0 2 BLVRA chr7:43840171 5'GT 43840171 Upstream 14bp
chr12 109547688 109547688 1 + G A UCEC 109547670 + 109547650 109547690 41 TACAGACGGCTCATCCCTCCCCTTTGTCAGTGTATAGAGGG TACAGACGGCTCATCCCTCCCCTTTGTCAGTGTATAGAAGG < 41bp 1 0.0395622226411546 1 0.0294241905212402 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109547670 chr12:109547688 nonsynonymous SNV 0.993 4 39 hm5C_associated_SNPs_45449 0 0 1 0 1 UNG chr12:109547634 3'AG 109547634 Downstream 55bp
chr15 57545636 57545636 1 + C T UCEC 57545632 + 57545612 57545652 41 CAATTCAAACTATGGAGGATCAAGCCTTGTTGCAAGCAGTC CAATTCAAACTATGGAGGATCAAGTCTTGTTGCAAGCAGTC < 41bp 1 0.275921523651633 1 0.228035926818848 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57545632 chr15:57545636 synonymous SNV . 0 25 hm5C_associated_SNPs_45450 0 0 1 0 1 TCF12 chr15:57545666 5'GT 57545666 Upstream 31bp
chr11 46393142 46393142 1 + C T UCEC 46393149 + 46393129 46393169 41 GATCCTCCGCGCCCGGAGGCCCCAGGTGAGTACTGCCTGCA GATCCTCCGCGCCTGGAGGCCCCAGGTGAGTACTGCCTGCA < 41bp 1 0.279386151960989 1 0.53308093547821 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46393149 chr11:46393142 nonsynonymous SNV 0.776 4 14 hm5C_associated_SNPs_45451 0 0 0 0 1 DGKZ chr11:46393153 5'GT 46393153 Upstream 12bp
chr11 46393142 46393142 1 + C T UCEC 46393150 + 46393130 46393170 41 ATCCTCCGCGCCCGGAGGCCCCAGGTGAGTACTGCCTGCAC ATCCTCCGCGCCTGGAGGCCCCAGGTGAGTACTGCCTGCAC < 41bp 1 0.446049448384832 1 0.421604424715042 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46393150 chr11:46393142 nonsynonymous SNV 0.776 4 13 hm5C_associated_SNPs_45452 0 0 0 0 1 DGKZ chr11:46393153 5'GT 46393153 Upstream 12bp
chr6 72003267 72003267 1 + T C UCEC 72003257 + 72003237 72003277 41 ACTTCAAAGATATCCGATATCAAAATGACTTGAGCAATCTT ACTTCAAAGATATCCGATATCAAAATGACTCGAGCAATCTT < 41bp 1 0.706967345170474 1 0.275700628757477 experiment 0.586065309659052 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OGFRL1 ENSG00000119900 CDS Human protein_coding chr6:72003257 chr6:72003267 nonsynonymous SNV 0.999 2 31 hm5C_associated_SNPs_45453 0 0 1 0 2 OGFRL1 chr6:72003236 3'AG 72003236 Downstream 32bp
chr6 72003267 72003267 1 + T C UCEC 72003257 + 72003237 72003277 41 ACTTCAAAGATATCCGATATCAAAATGACTTGAGCAATCTT ACTTCAAAGATATCCGATATCAAAATGACTCGAGCAATCTT < 41bp 1 0.706967345170474 1 0.275700628757477 experiment 0.586065309659052 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OGFRL1 ENSG00000119900 CDS Human protein_coding chr6:72003257 chr6:72003267 nonsynonymous SNV 0.999 2 31 hm5C_associated_SNPs_45453 0 0 1 0 2 OGFRL1 chr6:72003314 5'GT 72003314 Upstream 48bp
chr18 19371509 19371509 1 + G A UCEC 19371516 + 19371496 19371536 41 AATGGGCTGAAGCGATGCTTCCAGTAAGTATGTTTAGAATA AATGGGCTGAAGCAATGCTTCCAGTAAGTATGTTTAGAATA < 41bp 1 0.196938913594992 1 0.0458164513111115 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MIB1 ENSG00000101752 CDS Human protein_coding chr18:19371516 chr18:19371509 synonymous SNV . 0 14 hm5C_associated_SNPs_45457 0 0 1 0 1 MIB1 chr18:19371518 5'GT 19371518 Upstream 10bp
chr11 35201889 35201889 1 + A G UCEC 35201875 + 35201855 35201895 41 CGGATCCACCCCAACTCCATCTGTGCAGCAAACAACACAGG CGGATCCACCCCAACTCCATCTGTGCAGCAAACAGCACAGG < 41bp 1 0.380826207072202 1 0.381331831216812 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD44 ENSG00000026508 CDS Human protein_coding chr11:35201875 chr11:35201889 nonsynonymous SNV 0.404 0 35 hm5C_associated_SNPs_45458 0 0 1 0 2 CD44 chr11:35201821 3'AG 35201821 Downstream 69bp
chr11 35201889 35201889 1 + A G UCEC 35201875 + 35201855 35201895 41 CGGATCCACCCCAACTCCATCTGTGCAGCAAACAACACAGG CGGATCCACCCCAACTCCATCTGTGCAGCAAACAGCACAGG < 41bp 1 0.380826207072202 1 0.381331831216812 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD44 ENSG00000026508 CDS Human protein_coding chr11:35201875 chr11:35201889 nonsynonymous SNV 0.404 0 35 hm5C_associated_SNPs_45458 0 0 1 0 2 CD44 chr11:35201954 5'GT 35201954 Upstream 66bp
chr11 35201889 35201889 1 + A G UCEC 35201902 + 35201882 35201922 41 GCAAACAACACAGGGGTGTACATCCTCACATCCAACACCTC GCAAACAGCACAGGGGTGTACATCCTCACATCCAACACCTC < 41bp 1 0.191673292818273 1 0.117801874876022 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD44 ENSG00000026508 CDS Human protein_coding chr11:35201902 chr11:35201889 nonsynonymous SNV 0.404 0 8 hm5C_associated_SNPs_45459 0 0 1 0 2 CD44 chr11:35201821 3'AG 35201821 Downstream 69bp
chr11 35201889 35201889 1 + A G UCEC 35201902 + 35201882 35201922 41 GCAAACAACACAGGGGTGTACATCCTCACATCCAACACCTC GCAAACAGCACAGGGGTGTACATCCTCACATCCAACACCTC < 41bp 1 0.191673292818273 1 0.117801874876022 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD44 ENSG00000026508 CDS Human protein_coding chr11:35201902 chr11:35201889 nonsynonymous SNV 0.404 0 8 hm5C_associated_SNPs_45459 0 0 1 0 2 CD44 chr11:35201954 5'GT 35201954 Upstream 66bp
chr7 103006594 103006594 1 + A G UCEC 103006582 + 103006562 103006602 41 ACAAAAAAAGCCTGCCTTATCTTCTTTGATGAAATTGATGC ACAAAAAAAGCCTGCCTTATCTTCTTTGATGAGATTGATGC < 41bp 1 0.461006358421559 1 0.372030407190323 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMC2 ENSG00000161057 CDS Human protein_coding chr7:103006582 chr7:103006594 synonymous SNV . 0 33 hm5C_associated_SNPs_45460 0 0 0 0 2 PSMC2 chr7:103006523 3'AG 103006523 Downstream 72bp
chr7 103006594 103006594 1 + A G UCEC 103006582 + 103006562 103006602 41 ACAAAAAAAGCCTGCCTTATCTTCTTTGATGAAATTGATGC ACAAAAAAAGCCTGCCTTATCTTCTTTGATGAGATTGATGC < 41bp 1 0.461006358421559 1 0.372030407190323 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMC2 ENSG00000161057 CDS Human protein_coding chr7:103006582 chr7:103006594 synonymous SNV . 0 33 hm5C_associated_SNPs_45460 0 0 0 0 2 PSMC2 chr7:103006610 5'GT 103006610 Upstream 17bp
chr2 223782840 223782840 1 + T C UCEC 223782831 + 223782811 223782851 41 TTAAATGAAACAGAGGTGACCAACATCATTACTAGTAAAGA TTAAATGAAACAGAGGTGACCAACATCATCACTAGTAAAGA < 41bp 1 0.540070639531444 1 0.209888935089111 experiment 0.919858720937112 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACSL3 ENSG00000123983 CDS Human protein_coding chr2:223782831 chr2:223782840 synonymous SNV . 0 30 hm5C_associated_SNPs_45461 0 0 1 0 2 ACSL3 chr2:223782764 3'AG 223782764 Downstream 77bp
chr2 223782840 223782840 1 + T C UCEC 223782831 + 223782811 223782851 41 TTAAATGAAACAGAGGTGACCAACATCATTACTAGTAAAGA TTAAATGAAACAGAGGTGACCAACATCATCACTAGTAAAGA < 41bp 1 0.540070639531444 1 0.209888935089111 experiment 0.919858720937112 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACSL3 ENSG00000123983 CDS Human protein_coding chr2:223782831 chr2:223782840 synonymous SNV . 0 30 hm5C_associated_SNPs_45461 0 0 1 0 2 ACSL3 chr2:223782873 5'GT 223782873 Upstream 34bp
chr4 110442771 110442771 1 + T C UCEC 110442772 + 110442752 110442792 41 AGAAGATCCTAATCAGAGATCAAGTACAAAGGTATTTTATG AGAAGATCCTAATCAGAGACCAAGTACAAAGGTATTTTATG < 41bp 1 0.18368335490886 1 0.595999538898468 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SEC24B ENSG00000138802 CDS Human protein_coding chr4:110442772 chr4:110442771 nonsynonymous SNV 0.993 3 20 hm5C_associated_SNPs_45462 0 0 1 0 1 SEC24B chr4:110442782 5'GT 110442782 Upstream 12bp
chr19 10202244 10202244 1 + A G UCEC 10202247 + 10202227 10202267 41 CCCGCGCTGGGACCGGGACCCGGATCGCCGCAGCACCCACA CCCGCGCTGGGACCGGGGCCCGGATCGCCGCAGCACCCACA < 41bp 1 0.433789666621668 1 0.734257102012634 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10202247 chr19:10202244 nonsynonymous SNV 0.898 0 18 hm5C_associated_SNPs_45463 0 0 0 0 2 C19orf66 chr19:10202152 3'AG 10202152 Downstream 93bp
chr19 10202244 10202244 1 + A G UCEC 10202247 + 10202227 10202267 41 CCCGCGCTGGGACCGGGACCCGGATCGCCGCAGCACCCACA CCCGCGCTGGGACCGGGGCCCGGATCGCCGCAGCACCCACA < 41bp 1 0.433789666621668 1 0.734257102012634 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10202247 chr19:10202244 nonsynonymous SNV 0.898 0 18 hm5C_associated_SNPs_45463 0 0 0 0 2 C19orf66 chr19:10202306 5'GT 10202306 Upstream 63bp
chr11 606584 606584 1 + G A UCEC 606594 + 606574 606614 41 CTCCCTCAGCGCCAAGAGGGCGGGTGAGTGCCTTCCCTGCC CTCCCTCAGCACCAAGAGGGCGGGTGAGTGCCTTCCCTGCC < 41bp 1 0.742322664679189 1 0.843859851360321 experiment 0.515354670641623 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:606594 chr11:606584 nonsynonymous SNV 0.978 5 11 hm5C_associated_SNPs_45464 0 0 1 0 1 PHRF1 chr11:606596 5'GT 606596 Upstream 13bp
chr11 17316969 17316969 1 + A G UCEC 17316973 + 17316953 17316993 41 ACATAGACAAGACAAAAGTACAAAATATTCACCCTGTGGAA ACATAGACAAGACAAAGGTACAAAATATTCACCCTGTGGAA < 41bp 1 0.607920939533556 1 0.0914878845214844 experiment 0.784158120932888 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUCB2 ENSG00000070081 CDS Human protein_coding chr11:17316973 chr11:17316969 synonymous SNV . 0 17 hm5C_associated_SNPs_45465 0 0 1 1 1 NUCB2 chr11:17317014 5'GT 17317014 Upstream 46bp
chr6 33169569 33169569 1 + C A UCEC 33169566 + 33169546 33169586 41 TCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCCCCGTGGA TCAGCAGCTCCATTTTTTGTCCTATTCCTTATCCCCGTGGA < 41bp 1 0.115368263686947 1 0.0451162755489349 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33169566 chr6:33169569 synonymous SNV . 0 24 hm5C_associated_SNPs_45467 0 0 1 0 2 SLC39A7 chr6:33169522 3'AG 33169522 Downstream 48bp
chr6 33169569 33169569 1 + C A UCEC 33169566 + 33169546 33169586 41 TCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCCCCGTGGA TCAGCAGCTCCATTTTTTGTCCTATTCCTTATCCCCGTGGA < 41bp 1 0.115368263686947 1 0.0451162755489349 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33169566 chr6:33169569 synonymous SNV . 0 24 hm5C_associated_SNPs_45467 0 0 1 0 2 SLC39A7 chr6:33169538 3'AG 33169538 Downstream 32bp
chr13 31903708 31903708 1 + A G UCEC 31903694 + 31903674 31903714 41 CATCAAGTTCCCATATCGTTCCACAAACACTGGAACATCGA CATCAAGTTCCCATATCGTTCCACAAACACTGGAGCATCGA < 41bp 1 0.410240702997293 1 0.16580793261528 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31903694 chr13:31903708 nonsynonymous SNV 0.998 1 35 hm5C_associated_SNPs_45469 0 0 0 0 1 B3GLCT chr13:31903638 3'AG 31903638 Downstream 71bp
chr12 132325357 132325357 1 + A G UCEC 132325361 + 132325341 132325381 41 CACCACACCGCCGGGGACACCCACTTTGACGATGACGAGGC CACCACACCGCCGGGGGCACCCACTTTGACGATGACGAGGC < 41bp 1 0.18493460558113 1 0.270713835954666 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132325361 chr12:132325357 nonsynonymous SNV 0.117 1 17 hm5C_associated_SNPs_45471 0 0 0 0 1 MMP17 chr12:132325401 5'GT 132325401 Upstream 45bp
chr22 20079083 20079083 1 + T C UCEC 20079093 + 20079073 20079113 41 GCAGGCGGAGTCCGAGAGGCCCATCTTGCCAGCCAATCAGA GCAGGCGGAGCCCGAGAGGCCCATCTTGCCAGCCAATCAGA < 41bp 1 0.0585229634730683 1 0.135323762893677 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGCR8 ENSG00000128191 CDS Human protein_coding chr22:20079093 chr22:20079083 nonsynonymous SNV 0.937 2 11 hm5C_associated_SNPs_45474 0 0 1 0 1 DGCR8 chr22:20079155 5'GT 20079155 Upstream 73bp
chr11 69462879 69462879 1 + G A UCEC 69462886 + 69462866 69462906 41 TACCGCCTCACACGCTTCCTCTCCAGAGTGATCAAGTGTGA TACCGCCTCACACACTTCCTCTCCAGAGTGATCAAGTGTGA < 41bp 1 0.786041245948539 1 0.394859224557877 experiment 0.427917508102923 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control CCND1 ENSG00000110092 CDS Human protein_coding chr11:69462886 chr11:69462879 nonsynonymous SNV 0.343 0 14 hm5C_associated_SNPs_45475 0 0 1 0 1 CCND1 chr11:69462910 5'GT 69462910 Upstream 32bp
chr15 99673042 99673042 1 + G A UCEC 99673023 + 99673003 99673043 41 GGAGCTCTCGGTGTGTCTGACCGTGGTTCCTGGAGAGACGC GGAGCTCTCGGTGTGTCTGACCGTGGTTCCTGGAGAGACAC < 41bp 1 0.258047575591513 1 0.0567341148853302 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99673023 chr15:99673042 nonsynonymous SNV 0.007 0 40 hm5C_associated_SNPs_45479 0 0 1 0 1 SYNM chr15:99672955 3'AG 99672955 Downstream 88bp
chr17 57725629 57725629 1 + T C UCEC 57725620 + 57725600 57725640 41 GCAAAATCGTGTGGTGGGAGCTATGCAGCTATATTCTGTAG GCAAAATCGTGTGGTGGGAGCTATGCAGCCATATTCTGTAG < 41bp 1 0.250181529503234 1 0.106591522693634 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57725620 chr17:57725629 nonsynonymous SNV 0.998 4 30 hm5C_associated_SNPs_45481 0 0 1 0 1 CLTC chr17:57725601 3'AG 57725601 Downstream 29bp
chr2 15747322 15747322 1 + A G UCEC 15747340 + 15747320 15747360 41 CAAAGTTTCTCCCCAATGCTCCGAAAGCTCTCATTGTTGAA CAGAGTTTCTCCCCAATGCTCCGAAAGCTCTCATTGTTGAA < 41bp 1 0.449639919452969 1 0.0872959196567535 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX1 ENSG00000079785 CDS Human protein_coding chr2:15747340 chr2:15747322 nonsynonymous SNV 0.999 2 3 hm5C_associated_SNPs_45482 0 0 1 0 1 DDX1 chr2:15747299 3'AG 15747299 Downstream 24bp
chr5 139906570 139906570 1 + G T UCEC 139906560 + 139906540 139906580 41 CTTGTCAACCAGCTACAAGACAGTGTCATTGCCATTAAGCT CTTGTCAACCAGCTACAAGACAGTGTCATTTCCATTAAGCT < 41bp 1 0.158803246165427 1 0.132165998220444 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139906560 chr5:139906570 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_45484 0 0 1 0 2 ANKHD1;ANKHD1-EIF4EBP3 chr5:139906513 3'AG 139906513 Downstream 58bp
chr5 139906570 139906570 1 + G T UCEC 139906560 + 139906540 139906580 41 CTTGTCAACCAGCTACAAGACAGTGTCATTGCCATTAAGCT CTTGTCAACCAGCTACAAGACAGTGTCATTTCCATTAAGCT < 41bp 1 0.158803246165427 1 0.132165998220444 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139906560 chr5:139906570 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_45484 0 0 1 0 2 ANKHD1;ANKHD1-EIF4EBP3 chr5:139906659 5'GT 139906659 Upstream 90bp
chr1 109811560 109811560 1 + C T UCEC 109811544 + 109811524 109811564 41 CAAAGGGAACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGG CAAAGGGAACTTTGCTGGGGCCAAGCTGCCCCGCTATGAGG < 41bp 1 0.0407608970431723 1 0.078225314617157 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811544 chr1:109811560 synonymous SNV . 0 37 hm5C_associated_SNPs_45485 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 59bp
chr1 109811560 109811560 1 + C T UCEC 109811544 + 109811524 109811564 41 CAAAGGGAACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGG CAAAGGGAACTTTGCTGGGGCCAAGCTGCCCCGCTATGAGG < 41bp 1 0.0407608970431723 1 0.078225314617157 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811544 chr1:109811560 synonymous SNV . 0 37 hm5C_associated_SNPs_45485 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 71bp
chr1 109811560 109811560 1 + C T UCEC 109811552 + 109811532 109811572 41 ACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGT ACTTTGCTGGGGCCAAGCTGCCCCGCTATGAGGCCCTGCGT < 41bp 1 0.210524186506988 1 0.0685094892978668 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811552 chr1:109811560 synonymous SNV . 0 29 hm5C_associated_SNPs_45486 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 59bp
chr1 109811560 109811560 1 + C T UCEC 109811552 + 109811532 109811572 41 ACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGT ACTTTGCTGGGGCCAAGCTGCCCCGCTATGAGGCCCTGCGT < 41bp 1 0.210524186506988 1 0.0685094892978668 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811552 chr1:109811560 synonymous SNV . 0 29 hm5C_associated_SNPs_45486 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 71bp
chr1 109811560 109811560 1 + C T UCEC 109811553 + 109811533 109811573 41 CTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTG CTTTGCTGGGGCCAAGCTGCCCCGCTATGAGGCCCTGCGTG < 41bp 1 0.238752240492542 1 0.508653223514557 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811553 chr1:109811560 synonymous SNV . 0 28 hm5C_associated_SNPs_45487 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 59bp
chr1 109811560 109811560 1 + C T UCEC 109811553 + 109811533 109811573 41 CTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTG CTTTGCTGGGGCCAAGCTGCCCCGCTATGAGGCCCTGCGTG < 41bp 1 0.238752240492542 1 0.508653223514557 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811553 chr1:109811560 synonymous SNV . 0 28 hm5C_associated_SNPs_45487 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 71bp
chr1 109811560 109811560 1 + C T UCEC 109811554 + 109811534 109811574 41 TTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGG TTTGCTGGGGCCAAGCTGCCCCGCTATGAGGCCCTGCGTGG < 41bp 1 0.182034046268479 1 0.287102490663528 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811554 chr1:109811560 synonymous SNV . 0 27 hm5C_associated_SNPs_45488 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 59bp
chr1 109811560 109811560 1 + C T UCEC 109811554 + 109811534 109811574 41 TTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGG TTTGCTGGGGCCAAGCTGCCCCGCTATGAGGCCCTGCGTGG < 41bp 1 0.182034046268479 1 0.287102490663528 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811554 chr1:109811560 synonymous SNV . 0 27 hm5C_associated_SNPs_45488 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 71bp
chr1 109811560 109811560 1 + C T UCEC 109811555 + 109811535 109811575 41 TTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGGG TTGCTGGGGCCAAGCTGCCCCGCTATGAGGCCCTGCGTGGG < 41bp 1 0.383911841099132 1 0.830539345741272 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811555 chr1:109811560 synonymous SNV . 0 26 hm5C_associated_SNPs_45489 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 59bp
chr1 109811560 109811560 1 + C T UCEC 109811555 + 109811535 109811575 41 TTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGGG TTGCTGGGGCCAAGCTGCCCCGCTATGAGGCCCTGCGTGGG < 41bp 1 0.383911841099132 1 0.830539345741272 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811555 chr1:109811560 synonymous SNV . 0 26 hm5C_associated_SNPs_45489 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 71bp
chr7 2695742 2695742 1 + T C UCEC 2695731 + 2695711 2695751 41 GTGCGTGCCCCCCAGGACCCCCTCCTCCGCGTCCAGGAGGT GTGCGTGCCCCCCAGGACCCCCTCCTCCGCGCCCAGGAGGT < 41bp 1 0.0215433197029194 1 0.125098079442978 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2695731 chr7:2695742 nonsynonymous SNV 0.991 2 32 hm5C_associated_SNPs_45492 0 0 1 0 2 TTYH3 chr7:2695726 3'AG 2695726 Downstream 17bp
chr7 2695742 2695742 1 + T C UCEC 2695731 + 2695711 2695751 41 GTGCGTGCCCCCCAGGACCCCCTCCTCCGCGTCCAGGAGGT GTGCGTGCCCCCCAGGACCCCCTCCTCCGCGCCCAGGAGGT < 41bp 1 0.0215433197029194 1 0.125098079442978 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2695731 chr7:2695742 nonsynonymous SNV 0.991 2 32 hm5C_associated_SNPs_45492 0 0 1 0 2 TTYH3 chr7:2695818 5'GT 2695818 Upstream 77bp
chr7 2695742 2695742 1 + T C UCEC 2695734 + 2695714 2695754 41 CGTGCCCCCCAGGACCCCCTCCTCCGCGTCCAGGAGGTGCT CGTGCCCCCCAGGACCCCCTCCTCCGCGCCCAGGAGGTGCT < 41bp 1 0.023534040341271 1 0.239519417285919 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2695734 chr7:2695742 nonsynonymous SNV 0.991 2 29 hm5C_associated_SNPs_45493 0 0 1 0 2 TTYH3 chr7:2695726 3'AG 2695726 Downstream 17bp
chr7 2695742 2695742 1 + T C UCEC 2695734 + 2695714 2695754 41 CGTGCCCCCCAGGACCCCCTCCTCCGCGTCCAGGAGGTGCT CGTGCCCCCCAGGACCCCCTCCTCCGCGCCCAGGAGGTGCT < 41bp 1 0.023534040341271 1 0.239519417285919 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2695734 chr7:2695742 nonsynonymous SNV 0.991 2 29 hm5C_associated_SNPs_45493 0 0 1 0 2 TTYH3 chr7:2695818 5'GT 2695818 Upstream 77bp
chr16 67315533 67315533 1 + C T UCEC 67315518 + 67315498 67315538 41 TGCTGCTAGTGGGAAGCACGCTGCTGAAGGAAGTGCCTTCC TGCTGCTAGTGGGAAGCACGCTGCTGAAGGAAGTGTCTTCC < 41bp 1 0.478097113542931 1 0.173752993345261 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67315518 chr16:67315533 nonsynonymous SNV 0.096 2 36 hm5C_associated_SNPs_45494 0 0 1 0 2 PLEKHG4 chr16:67315470 3'AG 67315470 Downstream 64bp
chr16 67315533 67315533 1 + C T UCEC 67315518 + 67315498 67315538 41 TGCTGCTAGTGGGAAGCACGCTGCTGAAGGAAGTGCCTTCC TGCTGCTAGTGGGAAGCACGCTGCTGAAGGAAGTGTCTTCC < 41bp 1 0.478097113542931 1 0.173752993345261 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67315518 chr16:67315533 nonsynonymous SNV 0.096 2 36 hm5C_associated_SNPs_45494 0 0 1 0 2 PLEKHG4 chr16:67315547 5'GT 67315547 Upstream 15bp
chr11 33078735 33078735 1 + C T UCEC 33078749 + 33078729 33078769 41 AAGATCCCCCAGCATATGACCATGCTATCAAACTTGTAGGA AAGATCTCCCAGCATATGACCATGCTATCAAACTTGTAGGA < 41bp 1 0.299430627333247 1 0.439190208911896 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33078749 chr11:33078735 nonsynonymous SNV 0.955 4 7 hm5C_associated_SNPs_45495 0 0 1 0 2 TCP11L1 chr11:33078661 3'AG 33078661 Downstream 75bp
chr11 33078735 33078735 1 + C T UCEC 33078749 + 33078729 33078769 41 AAGATCCCCCAGCATATGACCATGCTATCAAACTTGTAGGA AAGATCTCCCAGCATATGACCATGCTATCAAACTTGTAGGA < 41bp 1 0.299430627333247 1 0.439190208911896 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33078749 chr11:33078735 nonsynonymous SNV 0.955 4 7 hm5C_associated_SNPs_45495 0 0 1 0 2 TCP11L1 chr11:33078781 5'GT 33078781 Upstream 47bp
chr11 71209473 71209473 1 + T C UCEC 71209490 + 71209470 71209510 41 GCGTACCACGCCGAGAACTACAGCCCTGAGGACAACAGGTT GCGCACCACGCCGAGAACTACAGCCCTGAGGACAACAGGTT < 41bp 1 0.190558388180611 1 0.326978027820587 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71209490 chr11:71209473 nonsynonymous SNV 0.073 4 4 hm5C_associated_SNPs_45496 0 0 1 0 1 NADSYN1 chr11:71209398 3'AG 71209398 Downstream 76bp
chr12 109547663 109547663 1 + T C UCEC 109547670 + 109547650 109547690 41 TACAGACGGCTCATCCCTCCCCTTTGTCAGTGTATAGAGGG TACAGACGGCTCACCCCTCCCCTTTGTCAGTGTATAGAGGG < 41bp 1 0.044882532600847 1 0.0436437726020813 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109547670 chr12:109547663 synonymous SNV . 0 14 hm5C_associated_SNPs_45497 0 0 1 0 1 UNG chr12:109547634 3'AG 109547634 Downstream 30bp
chr9 131010990 131010990 1 + G T UCEC 131010994 + 131010974 131011014 41 TCAACAAGACCGTGAGGGACCTCATGCCCAAGACCATCATG TCAACAAGACCGTGAGTGACCTCATGCCCAAGACCATCATG < 41bp 1 0.472142104616099 1 0.155211210250854 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM1 ENSG00000106976 CDS Human protein_coding chr9:131010994 chr9:131010990 nonsynonymous SNV 0.988 4 17 hm5C_associated_SNPs_45498 0 0 1 0 1 DNM1 chr9:131011032 5'GT 131011032 Upstream 43bp
chr15 22969317 22969317 1 + A G UCEC 22969313 + 22969293 22969333 41 CCCTGCACGTCTTCTGGGAGCTCAACTATGACTTCCTGCCC CCCTGCACGTCTTCTGGGAGCTCAGCTATGACTTCCTGCCC < 41bp 1 0.49682068583817 1 0.0721945762634277 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22969313 chr15:22969317 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_45499 0 0 1 0 1 CYFIP1 chr15:22969362 5'GT 22969362 Upstream 46bp
chr10 17275846 17275846 1 + G A UCEC 17275853 + 17275833 17275873 41 AGCCTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAA AGCCTGACCTCACAGCTGCCCTGCGTGACGTACGTCAGCAA < 41bp 1 0.587968385372365 1 0.752772450447083 experiment 0.824063229255271 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275853 chr10:17275846 synonymous SNV . 0 14 hm5C_associated_SNPs_45502 0 0 1 0 2 VIM chr10:17275769 3'AG 17275769 Downstream 78bp
chr10 17275846 17275846 1 + G A UCEC 17275853 + 17275833 17275873 41 AGCCTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAA AGCCTGACCTCACAGCTGCCCTGCGTGACGTACGTCAGCAA < 41bp 1 0.587968385372365 1 0.752772450447083 experiment 0.824063229255271 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275853 chr10:17275846 synonymous SNV . 0 14 hm5C_associated_SNPs_45502 0 0 1 0 2 VIM chr10:17275930 5'GT 17275930 Upstream 85bp
chr10 17275846 17275846 1 + G A UCEC 17275856 + 17275836 17275876 41 CTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAATAT CTGACCTCACAGCTGCCCTGCGTGACGTACGTCAGCAATAT < 41bp 1 0.377014828985366 1 0.131976336240768 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275856 chr10:17275846 synonymous SNV . 0 11 hm5C_associated_SNPs_45503 0 0 1 0 2 VIM chr10:17275769 3'AG 17275769 Downstream 78bp
chr10 17275846 17275846 1 + G A UCEC 17275856 + 17275836 17275876 41 CTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAATAT CTGACCTCACAGCTGCCCTGCGTGACGTACGTCAGCAATAT < 41bp 1 0.377014828985366 1 0.131976336240768 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275856 chr10:17275846 synonymous SNV . 0 11 hm5C_associated_SNPs_45503 0 0 1 0 2 VIM chr10:17275930 5'GT 17275930 Upstream 85bp
chr10 17275846 17275846 1 + G A UCEC 17275861 + 17275841 17275881 41 CTCACGGCTGCCCTGCGTGACGTACGTCAGCAATATGAAAG CTCACAGCTGCCCTGCGTGACGTACGTCAGCAATATGAAAG < 41bp 1 0.113726291042147 1 0.0312120318412781 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275861 chr10:17275846 synonymous SNV . 0 6 hm5C_associated_SNPs_45504 0 0 1 0 2 VIM chr10:17275769 3'AG 17275769 Downstream 78bp
chr10 17275846 17275846 1 + G A UCEC 17275861 + 17275841 17275881 41 CTCACGGCTGCCCTGCGTGACGTACGTCAGCAATATGAAAG CTCACAGCTGCCCTGCGTGACGTACGTCAGCAATATGAAAG < 41bp 1 0.113726291042147 1 0.0312120318412781 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275861 chr10:17275846 synonymous SNV . 0 6 hm5C_associated_SNPs_45504 0 0 1 0 2 VIM chr10:17275930 5'GT 17275930 Upstream 85bp
chr7 101837158 101837158 1 + C T UCEC 101837147 + 101837127 101837167 41 TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA TGAAGTCCATGGAGTTTGCACCGTCCGAGGGTGCTGGGACA < 41bp 1 0.0215941579869932 1 0.248377650976181 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837147 chr7:101837158 synonymous SNV . 0 32 hm5C_associated_SNPs_45505 0 0 1 0 2 CUX1 chr7:101837122 3'AG 101837122 Downstream 37bp
chr7 101837158 101837158 1 + C T UCEC 101837147 + 101837127 101837167 41 TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA TGAAGTCCATGGAGTTTGCACCGTCCGAGGGTGCTGGGACA < 41bp 1 0.0215941579869932 1 0.248377650976181 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837147 chr7:101837158 synonymous SNV . 0 32 hm5C_associated_SNPs_45505 0 0 1 0 2 CUX1 chr7:101837170 5'GT 101837170 Upstream 13bp
chr7 101837158 101837158 1 + C T UCEC 101837148 + 101837128 101837168 41 GAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC GAAGTCCATGGAGTTTGCACCGTCCGAGGGTGCTGGGACAC < 41bp 1 0.067721448764793 1 0.338296383619308 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837148 chr7:101837158 synonymous SNV . 0 31 hm5C_associated_SNPs_45506 0 0 1 0 2 CUX1 chr7:101837122 3'AG 101837122 Downstream 37bp
chr7 101837158 101837158 1 + C T UCEC 101837148 + 101837128 101837168 41 GAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC GAAGTCCATGGAGTTTGCACCGTCCGAGGGTGCTGGGACAC < 41bp 1 0.067721448764793 1 0.338296383619308 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837148 chr7:101837158 synonymous SNV . 0 31 hm5C_associated_SNPs_45506 0 0 1 0 2 CUX1 chr7:101837170 5'GT 101837170 Upstream 13bp
chrX 96212862 96212862 1 + T C UCEC 96212876 + 96212856 96212896 41 TCCAGGTCCTCCTGCAGCACCTCCATTGCCAGGTGTAGGGC TCCAGGCCCTCCTGCAGCACCTCCATTGCCAGGTGTAGGGC < 41bp 1 0.72320017345594 1 0.947863817214966 experiment 0.553599653088119 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control DIAPH2 ENSG00000147202 CDS Human protein_coding chrX:96212876 chrX:96212862 synonymous SNV . 0 7 hm5C_associated_SNPs_45507 0 0 0 0 1 DIAPH2 chrX:96212827 3'AG 96212827 Downstream 36bp
chr7 27833983 27833983 1 + G A UCEC 27833973 + 27833953 27833993 41 TAATGTCTTCACAAAGAAAACGGGGAATCAGCAGAAAGTGA TAATGTCTTCACAAAGAAAACGGGGAATCAACAGAAAGTGA < 41bp 1 0.757433629224423 1 0.594540894031525 experiment 0.485132741551153 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27833973 chr7:27833983 synonymous SNV . 0 31 hm5C_associated_SNPs_45508 0 0 1 0 2 TAX1BP1 chr7:27833942 3'AG 27833942 Downstream 42bp
chr7 27833983 27833983 1 + G A UCEC 27833973 + 27833953 27833993 41 TAATGTCTTCACAAAGAAAACGGGGAATCAGCAGAAAGTGA TAATGTCTTCACAAAGAAAACGGGGAATCAACAGAAAGTGA < 41bp 1 0.757433629224423 1 0.594540894031525 experiment 0.485132741551153 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27833973 chr7:27833983 synonymous SNV . 0 31 hm5C_associated_SNPs_45508 0 0 1 0 2 TAX1BP1 chr7:27834065 5'GT 27834065 Upstream 83bp
chr1 183519949 183519949 1 + C A UCEC 183519963 + 183519943 183519983 41 GCTCTCCTCCAACACACAACCATAATTCTGTTCCATTCTCC GCTCTCATCCAACACACAACCATAATTCTGTTCCATTCTCC < 41bp 1 0.413469040178673 1 0.119739234447479 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMG7 ENSG00000116698 CDS Human protein_coding chr1:183519963 chr1:183519949 nonsynonymous SNV 0.999 4 7 hm5C_associated_SNPs_45512 0 0 1 0 1 SMG7 chr1:183519886 3'AG 183519886 Downstream 64bp
chr5 167913517 167913517 1 + T C UCEC 167913509 + 167913489 167913529 41 GACGCTGATGGGAGGATGGACGTACTGGTGTCTGAGTGCTC GACGCTGATGGGAGGATGGACGTACTGGCGTCTGAGTGCTC < 41bp 1 0.284710151544081 1 0.133242458105087 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RARS ENSG00000113643 CDS Human protein_coding chr5:167913509 chr5:167913517 nonsynonymous SNV 0.589 1 29 hm5C_associated_SNPs_45513 0 0 1 0 1 RARS chr5:167913548 5'GT 167913548 Upstream 32bp
chr1 43911916 43911916 1 + G A UCEC 43911903 + 43911883 43911923 41 CAGCGGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGC CAGCGGGCACTGCCTGGGGGCATCATCCTCATGAAACTGGC < 41bp 1 0.0908850782575728 1 0.113065212965012 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911903 chr1:43911916 nonsynonymous SNV 0.991 4 34 hm5C_associated_SNPs_45514 0 0 1 0 2 SZT2 chr1:43911850 3'AG 43911850 Downstream 67bp
chr1 43911916 43911916 1 + G A UCEC 43911903 + 43911883 43911923 41 CAGCGGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGC CAGCGGGCACTGCCTGGGGGCATCATCCTCATGAAACTGGC < 41bp 1 0.0908850782575728 1 0.113065212965012 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911903 chr1:43911916 nonsynonymous SNV 0.991 4 34 hm5C_associated_SNPs_45514 0 0 1 0 2 SZT2 chr1:43911930 5'GT 43911930 Upstream 15bp
chr1 43911916 43911916 1 + G A UCEC 43911906 + 43911886 43911926 41 CGGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGCATT CGGGCACTGCCTGGGGGCATCATCCTCATGAAACTGGCATT < 41bp 1 0.0536336142586362 1 0.108226090669632 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911906 chr1:43911916 nonsynonymous SNV 0.991 4 31 hm5C_associated_SNPs_45515 0 0 1 0 2 SZT2 chr1:43911850 3'AG 43911850 Downstream 67bp
chr1 43911916 43911916 1 + G A UCEC 43911906 + 43911886 43911926 41 CGGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGCATT CGGGCACTGCCTGGGGGCATCATCCTCATGAAACTGGCATT < 41bp 1 0.0536336142586362 1 0.108226090669632 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911906 chr1:43911916 nonsynonymous SNV 0.991 4 31 hm5C_associated_SNPs_45515 0 0 1 0 2 SZT2 chr1:43911930 5'GT 43911930 Upstream 15bp
chr1 43911916 43911916 1 + G A UCEC 43911909 + 43911889 43911929 41 GCACTGCCTGGGGGCATCATCCTCATGGAACTGGCATTCCA GCACTGCCTGGGGGCATCATCCTCATGAAACTGGCATTCCA < 41bp 1 0.194551367509261 1 0.104591846466064 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911909 chr1:43911916 nonsynonymous SNV 0.991 4 28 hm5C_associated_SNPs_45516 0 0 1 0 2 SZT2 chr1:43911850 3'AG 43911850 Downstream 67bp
chr1 43911916 43911916 1 + G A UCEC 43911909 + 43911889 43911929 41 GCACTGCCTGGGGGCATCATCCTCATGGAACTGGCATTCCA GCACTGCCTGGGGGCATCATCCTCATGAAACTGGCATTCCA < 41bp 1 0.194551367509261 1 0.104591846466064 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911909 chr1:43911916 nonsynonymous SNV 0.991 4 28 hm5C_associated_SNPs_45516 0 0 1 0 2 SZT2 chr1:43911930 5'GT 43911930 Upstream 15bp
chr1 43911916 43911916 1 + G A UCEC 43911910 + 43911890 43911930 41 CACTGCCTGGGGGCATCATCCTCATGGAACTGGCATTCCAG CACTGCCTGGGGGCATCATCCTCATGAAACTGGCATTCCAG < 41bp 1 0.245400439962834 1 0.337716966867447 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911910 chr1:43911916 nonsynonymous SNV 0.991 4 27 hm5C_associated_SNPs_45517 0 0 1 0 2 SZT2 chr1:43911850 3'AG 43911850 Downstream 67bp
chr1 43911916 43911916 1 + G A UCEC 43911910 + 43911890 43911930 41 CACTGCCTGGGGGCATCATCCTCATGGAACTGGCATTCCAG CACTGCCTGGGGGCATCATCCTCATGAAACTGGCATTCCAG < 41bp 1 0.245400439962834 1 0.337716966867447 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911910 chr1:43911916 nonsynonymous SNV 0.991 4 27 hm5C_associated_SNPs_45517 0 0 1 0 2 SZT2 chr1:43911930 5'GT 43911930 Upstream 15bp
chr1 43911916 43911916 1 + G A UCEC 43911912 + 43911892 43911932 41 CTGCCTGGGGGCATCATCCTCATGGAACTGGCATTCCAGGT CTGCCTGGGGGCATCATCCTCATGAAACTGGCATTCCAGGT < 41bp 1 0.378873008542003 1 0.700985312461853 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911912 chr1:43911916 nonsynonymous SNV 0.991 4 25 hm5C_associated_SNPs_45518 0 0 1 0 2 SZT2 chr1:43911850 3'AG 43911850 Downstream 67bp
chr1 43911916 43911916 1 + G A UCEC 43911912 + 43911892 43911932 41 CTGCCTGGGGGCATCATCCTCATGGAACTGGCATTCCAGGT CTGCCTGGGGGCATCATCCTCATGAAACTGGCATTCCAGGT < 41bp 1 0.378873008542003 1 0.700985312461853 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911912 chr1:43911916 nonsynonymous SNV 0.991 4 25 hm5C_associated_SNPs_45518 0 0 1 0 2 SZT2 chr1:43911930 5'GT 43911930 Upstream 15bp
chr4 1017643 1017643 1 + C T UCEC 1017627 + 1017607 1017647 41 CGACCGCGCTTCACACAGCCCTCCAAGATGAGGCGCCGGGT CGACCGCGCTTCACACAGCCCTCCAAGATGAGGCGCTGGGT < 41bp 1 0.673183122943949 1 0.938007354736328 experiment 0.653633754112101 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control FGFRL1 ENSG00000127418 CDS Human protein_coding chr4:1017627 chr4:1017643 nonsynonymous SNV 0.995 4 37 hm5C_associated_SNPs_45523 0 0 1 0 1 FGFRL1 chr4:1017605 3'AG 1017605 Downstream 39bp
chr19 58797547 58797547 1 + G T UCEC 58797552 + 58797532 58797572 41 TGGGTGGCTGAGAGAGGAACCACCCAGGGCTGCCATCCAGG TGGGTGGCTGAGAGATGAACCACCCAGGGCTGCCATCCAGG < 41bp 1 0.406406817930089 1 0.104569435119629 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF8 ENSG00000083842;ENSG00000273439 CDS Human other chr19:58797552 chr19:58797547 stopgain 0.092 0 16 hm5C_associated_SNPs_45524 0 0 1 0 2 ZNF8 chr19:58797476 3'AG 58797476 Downstream 72bp
chr19 58797547 58797547 1 + G T UCEC 58797552 + 58797532 58797572 41 TGGGTGGCTGAGAGAGGAACCACCCAGGGCTGCCATCCAGG TGGGTGGCTGAGAGATGAACCACCCAGGGCTGCCATCCAGG < 41bp 1 0.406406817930089 1 0.104569435119629 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF8 ENSG00000083842;ENSG00000273439 CDS Human other chr19:58797552 chr19:58797547 stopgain 0.092 0 16 hm5C_associated_SNPs_45524 0 0 1 0 2 ZNF8 chr19:58797571 5'GT 58797571 Upstream 25bp
chr2 26987227 26987227 1 + A G UCEC 26987239 + 26987219 26987259 41 TGGCCTGGACCAAGTACCAGCTGTTCCTGGCCGGGCTCATG TGGCCTGGGCCAAGTACCAGCTGTTCCTGGCCGGGCTCATG < 41bp 1 0.19383360187873 1 0.200738191604614 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC35F6 ENSG00000213699 CDS Human protein_coding chr2:26987239 chr2:26987227 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_45525 0 0 1 0 1 SLC35F6 chr2:26987294 5'GT 26987294 Upstream 68bp
chr12 69119559 69119559 1 + T C UCEC 69119560 + 69119540 69119580 41 ATAGTTCAAAAGTTTCTTATCCTGGGAGACATTGATGGTAA ATAGTTCAAAAGTTTCTTACCCTGGGAGACATTGATGGTAA < 41bp 1 0.307239294321563 1 0.473795205354691 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69119560 chr12:69119559 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_45527 0 0 1 0 2 NUP107 chr12:69119507 3'AG 69119507 Downstream 53bp
chr12 69119559 69119559 1 + T C UCEC 69119560 + 69119540 69119580 41 ATAGTTCAAAAGTTTCTTATCCTGGGAGACATTGATGGTAA ATAGTTCAAAAGTTTCTTACCCTGGGAGACATTGATGGTAA < 41bp 1 0.307239294321563 1 0.473795205354691 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69119560 chr12:69119559 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_45527 0 0 1 0 2 NUP107 chr12:69119576 5'GT 69119576 Upstream 18bp
chr11 111896434 111896434 1 + T C UCEC 111896435 + 111896415 111896455 41 ACTGCTGCAGCTTTTGGGGTCGCCCGGCCGCCGCTATTACA ACTGCTGCAGCTTTTGGGGCCGCCCGGCCGCCGCTATTACA < 41bp 1 0.331245503399115 1 0.128631204366684 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DLAT ENSG00000150768 CDS Human protein_coding chr11:111896435 chr11:111896434 nonsynonymous SNV 0.203 0 20 hm5C_associated_SNPs_45529 0 0 1 0 2 DLAT chr11:111896348 3'AG 111896348 Downstream 87bp
chr11 111896434 111896434 1 + T C UCEC 111896435 + 111896415 111896455 41 ACTGCTGCAGCTTTTGGGGTCGCCCGGCCGCCGCTATTACA ACTGCTGCAGCTTTTGGGGCCGCCCGGCCGCCGCTATTACA < 41bp 1 0.331245503399115 1 0.128631204366684 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DLAT ENSG00000150768 CDS Human protein_coding chr11:111896435 chr11:111896434 nonsynonymous SNV 0.203 0 20 hm5C_associated_SNPs_45529 0 0 1 0 2 DLAT chr11:111896475 5'GT 111896475 Upstream 42bp
chr22 35726433 35726433 1 + G A UCEC 35726424 + 35726404 35726444 41 ATGAGCAGCTGACAGAGGAGCTGCTCATCGTCAATGACAAT ATGAGCAGCTGACAGAGGAGCTGCTCATCATCAATGACAAT < 41bp 1 0.135943126184217 1 0.0452596843242645 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1 ENSG00000100284 CDS Human protein_coding chr22:35726424 chr22:35726433 nonsynonymous SNV 0.944 0 30 hm5C_associated_SNPs_45530 0 0 1 1 2 TOM1 chr22:35726340 3'AG 35726340 Downstream 94bp
chr22 35726433 35726433 1 + G A UCEC 35726424 + 35726404 35726444 41 ATGAGCAGCTGACAGAGGAGCTGCTCATCGTCAATGACAAT ATGAGCAGCTGACAGAGGAGCTGCTCATCATCAATGACAAT < 41bp 1 0.135943126184217 1 0.0452596843242645 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1 ENSG00000100284 CDS Human protein_coding chr22:35726424 chr22:35726433 nonsynonymous SNV 0.944 0 30 hm5C_associated_SNPs_45530 0 0 1 1 2 TOM1 chr22:35726473 5'GT 35726473 Upstream 41bp
chr17 36619125 36619125 1 + A G UCEC 36619123 + 36619103 36619143 41 CCGCCTGGAGCCCATGGACACCATCTTTGTCAAGAATGTGA CCGCCTGGAGCCCATGGACACCGTCTTTGTCAAGAATGTGA < 41bp 1 0.0549066251358274 1 0.0408101677894592 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP23 ENSG00000225485 CDS Human other chr17:36619123 chr17:36619125 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_45531 0 0 0 0 2 ARHGAP23 chr17:36619087 3'AG 36619087 Downstream 39bp
chr17 36619125 36619125 1 + A G UCEC 36619123 + 36619103 36619143 41 CCGCCTGGAGCCCATGGACACCATCTTTGTCAAGAATGTGA CCGCCTGGAGCCCATGGACACCGTCTTTGTCAAGAATGTGA < 41bp 1 0.0549066251358274 1 0.0408101677894592 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP23 ENSG00000225485 CDS Human other chr17:36619123 chr17:36619125 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_45531 0 0 0 0 2 ARHGAP23 chr17:36619182 5'GT 36619182 Upstream 58bp
chr7 5952549 5952549 1 + T C UCEC 5952554 + 5952534 5952574 41 TTTTGTAAATACAGATGACACTTATGAAGAGCTCCATTTAA TTTTGTAAATACAGACGACACTTATGAAGAGCTCCATTTAA < 41bp 1 0.224055851306554 1 0.026585191488266 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCZ1 ENSG00000122674 CDS Human protein_coding chr7:5952554 chr7:5952549 synonymous SNV . 0 16 hm5C_associated_SNPs_45532 0 0 0 0 2 CCZ1 chr7:5952474 3'AG 5952474 Downstream 76bp
chr7 5952549 5952549 1 + T C UCEC 5952554 + 5952534 5952574 41 TTTTGTAAATACAGATGACACTTATGAAGAGCTCCATTTAA TTTTGTAAATACAGACGACACTTATGAAGAGCTCCATTTAA < 41bp 1 0.224055851306554 1 0.026585191488266 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCZ1 ENSG00000122674 CDS Human protein_coding chr7:5952554 chr7:5952549 synonymous SNV . 0 16 hm5C_associated_SNPs_45532 0 0 0 0 2 CCZ1 chr7:5952585 5'GT 5952585 Upstream 37bp
chr7 5952571 5952571 1 + T G UCEC 5952554 + 5952534 5952574 41 TTTTGTAAATACAGATGACACTTATGAAGAGCTCCATTTAA TTTTGTAAATACAGATGACACTTATGAAGAGCTCCATGTAA < 41bp 1 0.254042008816594 1 0.0273202359676361 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCZ1 ENSG00000122674 CDS Human protein_coding chr7:5952554 chr7:5952571 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_45533 0 0 0 0 2 CCZ1 chr7:5952474 3'AG 5952474 Downstream 98bp
chr7 5952571 5952571 1 + T G UCEC 5952554 + 5952534 5952574 41 TTTTGTAAATACAGATGACACTTATGAAGAGCTCCATTTAA TTTTGTAAATACAGATGACACTTATGAAGAGCTCCATGTAA < 41bp 1 0.254042008816594 1 0.0273202359676361 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCZ1 ENSG00000122674 CDS Human protein_coding chr7:5952554 chr7:5952571 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_45533 0 0 0 0 2 CCZ1 chr7:5952585 5'GT 5952585 Upstream 15bp
chr19 10886498 10886498 1 + A G UCEC 10886497 + 10886477 10886517 41 CAGTTCATCAGCCGGGAGAGCAGCCTCATTCTGGCTGTCAC CAGTTCATCAGCCGGGAGAGCGGCCTCATTCTGGCTGTCAC < 41bp 1 0.267303699099767 1 0.267601728439331 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10886497 chr19:10886498 nonsynonymous SNV 0.943 3 22 hm5C_associated_SNPs_45534 0 0 1 1 1 DNM2 chr19:10886582 5'GT 10886582 Upstream 85bp
chr4 103500165 103500165 1 + A G UCEC 103500160 + 103500140 103500180 41 CTGGCAGCTTCACAAGGCGCCTGGAACCCGTGGTATCAGAC CTGGCAGCTTCACAAGGCGCCTGGAGCCCGTGGTATCAGAC < 41bp 1 0.693635674863559 1 0.510310292243958 experiment 0.612728650272881 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103500160 chr4:103500165 synonymous SNV . 0 26 hm5C_associated_SNPs_45539 0 0 1 0 1 NFKB1 chr4:103500196 5'GT 103500196 Upstream 32bp
chr20 33033236 33033236 1 + G A UCEC 33033240 + 33033220 33033260 41 AGCTTCAAGGAGCAATGCAGCAGTTTAACCAGAGATTCATT AGCTTCAAGGAGCAATACAGCAGTTTAACCAGAGATTCATT < 41bp 1 0.233071436703963 1 0.219451904296875 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ITCH ENSG00000078747 CDS Human protein_coding chr20:33033240 chr20:33033236 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_45540 0 0 1 0 1 ITCH chr20:33033266 5'GT 33033266 Upstream 31bp
chr18 19371515 19371515 1 + T C UCEC 19371516 + 19371496 19371536 41 AATGGGCTGAAGCGATGCTTCCAGTAAGTATGTTTAGAATA AATGGGCTGAAGCGATGCTCCCAGTAAGTATGTTTAGAATA < 41bp 1 0.186737894304327 1 0.0326895713806152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MIB1 ENSG00000101752 CDS Human protein_coding chr18:19371516 chr18:19371515 synonymous SNV . 0 20 hm5C_associated_SNPs_45541 0 0 1 0 1 MIB1 chr18:19371518 5'GT 19371518 Upstream 4bp
chr13 100920966 100920966 1 + T C UCEC 100920958 + 100920938 100920978 41 TTCAGGTTCTAGGTGATAAACATGGGAATGCTTTATGGCTT TTCAGGTTCTAGGTGATAAACATGGGAACGCTTTATGGCTT < 41bp 1 0.497743775595783 1 0.509622037410736 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCCA ENSG00000175198 CDS Human protein_coding chr13:100920958 chr13:100920966 synonymous SNV . 0 29 hm5C_associated_SNPs_45542 0 0 1 0 2 PCCA chr13:100920943 3'AG 100920943 Downstream 24bp
chr13 100920966 100920966 1 + T C UCEC 100920958 + 100920938 100920978 41 TTCAGGTTCTAGGTGATAAACATGGGAATGCTTTATGGCTT TTCAGGTTCTAGGTGATAAACATGGGAACGCTTTATGGCTT < 41bp 1 0.497743775595783 1 0.509622037410736 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCCA ENSG00000175198 CDS Human protein_coding chr13:100920958 chr13:100920966 synonymous SNV . 0 29 hm5C_associated_SNPs_45542 0 0 1 0 2 PCCA chr13:100921037 5'GT 100921037 Upstream 72bp
chr8 17794722 17794722 1 + G T UCEC 17794729 + 17794709 17794749 41 GAAAGTGATAAAAGAGTAACCAATGATATTTCTCCGGAGTC GAAAGTGATAAAATAGTAACCAATGATATTTCTCCGGAGTC < 41bp 1 0.296431344859016 1 0.453016072511673 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCM1 ENSG00000078674 CDS Human protein_coding chr8:17794729 chr8:17794722 nonsynonymous SNV 0.997 4 14 hm5C_associated_SNPs_45543 0 0 1 0 1 PCM1 chr8:17794643 3'AG 17794643 Downstream 80bp
chr11 64118672 64118672 1 + C T UCEC 64118659 + 64118639 64118679 41 AGGGCCCCGCGGGGCTGGGGCCCAAAAAGCGTGCGGAGCCT AGGGCCCCGCGGGGCTGGGGCCCAAAAAGCGTGTGGAGCCT < 41bp 1 0.316977952018454 1 0.383491218090057 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64118659 chr11:64118672 nonsynonymous SNV 0.000 0 34 hm5C_associated_SNPs_45544 0 0 1 0 1 CCDC88B chr11:64118632 3'AG 64118632 Downstream 41bp
chr11 64118672 64118672 1 + C T UCEC 64118660 + 64118640 64118680 41 GGGCCCCGCGGGGCTGGGGCCCAAAAAGCGTGCGGAGCCTC GGGCCCCGCGGGGCTGGGGCCCAAAAAGCGTGTGGAGCCTC < 41bp 1 0.283620230291822 1 0.355224311351776 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64118660 chr11:64118672 nonsynonymous SNV 0.000 0 33 hm5C_associated_SNPs_45545 0 0 1 0 1 CCDC88B chr11:64118632 3'AG 64118632 Downstream 41bp
chr11 64118672 64118672 1 + C T UCEC 64118661 + 64118641 64118681 41 GGCCCCGCGGGGCTGGGGCCCAAAAAGCGTGCGGAGCCTCA GGCCCCGCGGGGCTGGGGCCCAAAAAGCGTGTGGAGCCTCA < 41bp 1 0.505354616347329 1 0.667921483516693 experiment 0.989290767305341 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64118661 chr11:64118672 nonsynonymous SNV 0.000 0 32 hm5C_associated_SNPs_45546 0 0 1 0 1 CCDC88B chr11:64118632 3'AG 64118632 Downstream 41bp
chr16 675487 675487 1 + G A UCEC 675485 + 675465 675505 41 TGGTCCTTTGACGGCATCGACCGCTGGATCAAGGAGATCGA TGGTCCTTTGACGGCATCGACCACTGGATCAAGGAGATCGA < 41bp 1 0.119303374040112 1 0.0999394357204437 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675485 chr16:675487 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_45547 0 0 1 0 2 RAB40C chr16:675432 3'AG 675432 Downstream 56bp
chr16 675487 675487 1 + G A UCEC 675485 + 675465 675505 41 TGGTCCTTTGACGGCATCGACCGCTGGATCAAGGAGATCGA TGGTCCTTTGACGGCATCGACCACTGGATCAAGGAGATCGA < 41bp 1 0.119303374040112 1 0.0999394357204437 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675485 chr16:675487 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_45547 0 0 1 0 2 RAB40C chr16:675509 5'GT 675509 Upstream 23bp
chr1 161753836 161753836 1 + G T UCEC 161753845 + 161753825 161753865 41 CAAGTTATTCAGTCTCGTCTCCTCGGTCAGTGGACTCTTAT CAAGTTATTCATTCTCGTCTCCTCGGTCAGTGGACTCTTAT < 41bp 1 0.144143056165242 1 0.105536103248596 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161753845 chr1:161753836 nonsynonymous SNV 0.982 1 12 hm5C_associated_SNPs_45548 0 0 1 0 2 ATF6 chr1:161753780 3'AG 161753780 Downstream 57bp
chr1 161753836 161753836 1 + G T UCEC 161753845 + 161753825 161753865 41 CAAGTTATTCAGTCTCGTCTCCTCGGTCAGTGGACTCTTAT CAAGTTATTCATTCTCGTCTCCTCGGTCAGTGGACTCTTAT < 41bp 1 0.144143056165242 1 0.105536103248596 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161753845 chr1:161753836 nonsynonymous SNV 0.982 1 12 hm5C_associated_SNPs_45548 0 0 1 0 2 ATF6 chr1:161753886 5'GT 161753886 Upstream 51bp
chr6 90305654 90305654 1 + A G UCEC 90305648 + 90305628 90305668 41 TTCACAGCATGGCCGGACTCCCCTGCATCTTGCTGCCAATA TTCACAGCATGGCCGGACTCCCCTGCGTCTTGCTGCCAATA < 41bp 1 0.100405628402189 1 0.0721805989742279 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD6 ENSG00000135299 CDS Human protein_coding chr6:90305648 chr6:90305654 nonsynonymous SNV 0.992 3 27 hm5C_associated_SNPs_45549 0 0 0 0 2 ANKRD6 chr6:90305635 3'AG 90305635 Downstream 20bp
chr6 90305654 90305654 1 + A G UCEC 90305648 + 90305628 90305668 41 TTCACAGCATGGCCGGACTCCCCTGCATCTTGCTGCCAATA TTCACAGCATGGCCGGACTCCCCTGCGTCTTGCTGCCAATA < 41bp 1 0.100405628402189 1 0.0721805989742279 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD6 ENSG00000135299 CDS Human protein_coding chr6:90305648 chr6:90305654 nonsynonymous SNV 0.992 3 27 hm5C_associated_SNPs_45549 0 0 0 0 2 ANKRD6 chr6:90305733 5'GT 90305733 Upstream 80bp
chr1 39926411 39926411 1 + G T UCEC 39926397 + 39926377 39926417 41 CTCGAGTGATGGATTTCTTCCGGCGCATTGATAAGGACCAG CTCGAGTGATGGATTTCTTCCGGCGCATTGATAATGACCAG < 41bp 1 0.223273294783978 1 0.804598212242126 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39926397 chr1:39926411 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_45550 0 0 1 0 1 MACF1 chr1:39926466 5'GT 39926466 Upstream 56bp
chr17 40817765 40817765 1 + G A UCEC 40817780 + 40817760 40817800 41 TCATCGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC TCATCAGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC < 41bp 1 0.348969962898014 1 0.0434269607067108 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817780 chr17:40817765 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_45551 0 0 0 0 2 TUBG2 chr17:40817696 3'AG 40817696 Downstream 70bp
chr17 40817765 40817765 1 + G A UCEC 40817780 + 40817760 40817800 41 TCATCGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC TCATCAGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC < 41bp 1 0.348969962898014 1 0.0434269607067108 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817780 chr17:40817765 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_45551 0 0 0 0 2 TUBG2 chr17:40817845 5'GT 40817845 Upstream 81bp
chr1 171558668 171558668 1 + G T UCEC 171558656 + 171558636 171558676 41 CATGAGCCATGCTCGTTTGCCACATGTAGCCAGGGGTCCTT CATGAGCCATGCTCGTTTGCCACATGTAGCCATGGGTCCTT < 41bp 1 0.373812532839268 1 0.182383209466934 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171558656 chr1:171558668 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_45552 0 0 1 0 1 PRRC2C chr1:171558744 5'GT 171558744 Upstream 77bp
chr17 18057177 18057177 1 + G T UCEC 18057159 + 18057139 18057179 41 CTGCACCGCCTCATCAATCCCAACTTCTACGGCTATCAGGA CTGCACCGCCTCATCAATCCCAACTTCTACGGCTATCATGA < 41bp 1 0.132883920845515 1 0.127401351928711 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MYO15A ENSG00000091536 CDS Human protein_coding chr17:18057159 chr17:18057177 nonsynonymous SNV 0.999 1 39 hm5C_associated_SNPs_45553 0 0 0 0 1 MYO15A chr17:18057210 5'GT 18057210 Upstream 34bp
chr1 151633300 151633300 1 + A G UCEC 151633305 + 151633285 151633325 41 CGAGTAATTGGTGAGAGTGACATCATGCAGGAATTCCTATC CGAGTAATTGGTGAGGGTGACATCATGCAGGAATTCCTATC < 41bp 1 0.343796737577254 1 0.337820738554001 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX27 ENSG00000143376 CDS Human protein_coding chr1:151633305 chr1:151633300 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_45554 0 0 1 0 1 SNX27 chr1:151633338 5'GT 151633338 Upstream 39bp
chr6 168363206 168363206 1 + C T UCEC 168363202 + 168363182 168363222 41 GCGAGGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG GCGAGGCAAGAGGAAGAGCGCCGGTGGCAGGAGGAGGAGCG < 41bp 1 0.345457802389927 1 0.617064356803894 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363202 chr6:168363206 nonsynonymous SNV 0.127 0 25 hm5C_associated_SNPs_45555 0 0 1 0 3 AFDN chr6:168363113 3'AG 168363113 Downstream 94bp
chr6 168363206 168363206 1 + C T UCEC 168363202 + 168363182 168363222 41 GCGAGGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG GCGAGGCAAGAGGAAGAGCGCCGGTGGCAGGAGGAGGAGCG < 41bp 1 0.345457802389927 1 0.617064356803894 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363202 chr6:168363206 nonsynonymous SNV 0.127 0 25 hm5C_associated_SNPs_45555 0 0 1 0 3 AFDN chr6:168363119 3'AG 168363119 Downstream 88bp
chr6 168363206 168363206 1 + C T UCEC 168363202 + 168363182 168363222 41 GCGAGGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG GCGAGGCAAGAGGAAGAGCGCCGGTGGCAGGAGGAGGAGCG < 41bp 1 0.345457802389927 1 0.617064356803894 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363202 chr6:168363206 nonsynonymous SNV 0.127 0 25 hm5C_associated_SNPs_45555 0 0 1 0 3 AFDN chr6:168363247 5'GT 168363247 Upstream 42bp
chr19 50338791 50338791 1 + A G UCEC 50338810 + 50338790 50338830 41 GATGGGGGGACAGCAGGCACCCCCAGGGCTGGGGCCCATTC GGTGGGGGGACAGCAGGCACCCCCAGGGCTGGGGCCCATTC < 41bp 1 0.707359606007943 1 0.424708157777786 experiment 0.585280787984114 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50338810 chr19:50338791 nonsynonymous SNV 0.984 2 2 hm5C_associated_SNPs_45556 0 0 1 0 2 MED25 chr19:50338791 3'AG 50338791 Downstream 1bp
chr19 50338791 50338791 1 + A G UCEC 50338810 + 50338790 50338830 41 GATGGGGGGACAGCAGGCACCCCCAGGGCTGGGGCCCATTC GGTGGGGGGACAGCAGGCACCCCCAGGGCTGGGGCCCATTC < 41bp 1 0.707359606007943 1 0.424708157777786 experiment 0.585280787984114 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50338810 chr19:50338791 nonsynonymous SNV 0.984 2 2 hm5C_associated_SNPs_45556 0 0 1 0 2 MED25 chr19:50338862 5'GT 50338862 Upstream 72bp
chr1 94964166 94964166 1 + T C UCEC 94964179 + 94964159 94964199 41 TTCGATCTGGGGCTAATGTTCTAATTTGTGGTCCAAATGGC TTCGATCCGGGGCTAATGTTCTAATTTGTGGTCCAAATGGC < 41bp 1 0.497053647298543 1 0.181958705186844 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94964179 chr1:94964166 synonymous SNV . 0 8 hm5C_associated_SNPs_45558 0 0 1 0 2 ABCD3 chr1:94964158 3'AG 94964158 Downstream 9bp
chr1 94964166 94964166 1 + T C UCEC 94964179 + 94964159 94964199 41 TTCGATCTGGGGCTAATGTTCTAATTTGTGGTCCAAATGGC TTCGATCCGGGGCTAATGTTCTAATTTGTGGTCCAAATGGC < 41bp 1 0.497053647298543 1 0.181958705186844 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94964179 chr1:94964166 synonymous SNV . 0 8 hm5C_associated_SNPs_45558 0 0 1 0 2 ABCD3 chr1:94964235 5'GT 94964235 Upstream 70bp
chr13 24242896 24242896 1 + G A UCEC 24242887 + 24242867 24242907 41 CTTCGGATCCCTCACGCAGTCCATCTGTGGCGAGTTTTCAG CTTCGGATCCCTCACGCAGTCCATCTGTGACGAGTTTTCAG < 41bp 1 0.114807286270899 1 0.0905694663524628 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24242887 chr13:24242896 nonsynonymous SNV 0.838 4 30 hm5C_associated_SNPs_45559 0 0 1 0 1 TNFRSF19 chr13:24242831 3'AG 24242831 Downstream 66bp
chr3 49742453 49742453 1 + C T UCEC 49742448 + 49742428 49742468 41 GGCCCTGGCTGTTGGGGGGCCACTGCCCCTGCCCCGGCCCG GGCCCTGGCTGTTGGGGGGCCACTGTCCCTGCCCCGGCCCG < 41bp 1 0.454021359435791 1 0.241435497999191 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49742448 chr3:49742453 nonsynonymous SNV 0.969 0 26 hm5C_associated_SNPs_45560 0 0 1 0 1 RNF123 chr3:49742417 3'AG 49742417 Downstream 37bp
chr12 112915711 112915711 1 + T C UCEC 112915716 + 112915696 112915736 41 CAAAAAGAGTTACATTGCCACACAAGGCTGCCTGCAAAACA CAAAAAGAGTTACATCGCCACACAAGGCTGCCTGCAAAACA < 41bp 1 0.523251084806464 1 0.141052097082138 experiment 0.953497830387072 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915716 chr12:112915711 synonymous SNV . 0 16 hm5C_associated_SNPs_45562 0 0 1 0 1 PTPN11 chr12:112915661 3'AG 112915661 Downstream 51bp
chr6 96976484 96976484 1 + G A UCEC 96976482 + 96976462 96976502 41 GCTCGACATAAAGCACGTATCCGTGGACTATTCAGTGCTAT GCTCGACATAAAGCACGTATCCATGGACTATTCAGTGCTAT < 41bp 1 0.318847876620087 1 0.225613683462143 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UFL1 ENSG00000014123 CDS Human protein_coding chr6:96976482 chr6:96976484 nonsynonymous SNV 0.981 2 23 hm5C_associated_SNPs_45563 0 0 1 0 1 UFL1 chr6:96976508 5'GT 96976508 Upstream 25bp
chr9 100077142 100077142 1 + G A UCEC 100077158 + 100077138 100077178 41 AAGCGTGTTGAAGAAATATGCAGAAGTCATAGAGAAAACTT AAGCATGTTGAAGAAATATGCAGAAGTCATAGAGAAAACTT < 41bp 1 0.583651564466374 1 0.502076923847198 experiment 0.832696871067251 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100077158 chr9:100077142 nonsynonymous SNV 0.518 4 5 hm5C_associated_SNPs_45564 0 0 0 2 2 CCDC180 chr9:100077133 3'AG 100077133 Downstream 10bp
chr9 100077142 100077142 1 + G A UCEC 100077158 + 100077138 100077178 41 AAGCGTGTTGAAGAAATATGCAGAAGTCATAGAGAAAACTT AAGCATGTTGAAGAAATATGCAGAAGTCATAGAGAAAACTT < 41bp 1 0.583651564466374 1 0.502076923847198 experiment 0.832696871067251 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100077158 chr9:100077142 nonsynonymous SNV 0.518 4 5 hm5C_associated_SNPs_45564 0 0 0 2 2 CCDC180 chr9:100077228 5'GT 100077228 Upstream 87bp
chr2 233428993 233428993 1 + C T UCEC 233428984 + 233428964 233429004 41 AGTTCTGGAGGTTTTATAGCCACATGGTACGTCCTGGGGAC AGTTCTGGAGGTTTTATAGCCACATGGTATGTCCTGGGGAC < 41bp 1 0.705314822852344 1 0.763994336128235 experiment 0.589370354295311 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control EIF4E2 ENSG00000135930 CDS Human protein_coding chr2:233428984 chr2:233428993 nonsynonymous SNV 0.999 2 30 hm5C_associated_SNPs_45565 0 0 1 0 2 EIF4E2 chr2:233428957 3'AG 233428957 Downstream 37bp
chr2 233428993 233428993 1 + C T UCEC 233428984 + 233428964 233429004 41 AGTTCTGGAGGTTTTATAGCCACATGGTACGTCCTGGGGAC AGTTCTGGAGGTTTTATAGCCACATGGTATGTCCTGGGGAC < 41bp 1 0.705314822852344 1 0.763994336128235 experiment 0.589370354295311 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control EIF4E2 ENSG00000135930 CDS Human protein_coding chr2:233428984 chr2:233428993 nonsynonymous SNV 0.999 2 30 hm5C_associated_SNPs_45565 0 0 1 0 2 EIF4E2 chr2:233429061 5'GT 233429061 Upstream 69bp
chr1 43897038 43897038 1 + G T UCEC 43897029 + 43897009 43897049 41 CTCGGGCCCCCACTGCCACCCCCAGAAGAGGAGAGGTACTT CTCGGGCCCCCACTGCCACCCCCAGAAGATGAGAGGTACTT < 41bp 1 0.0412030249081828 1 0.433579355478287 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43897029 chr1:43897038 nonsynonymous SNV 0.999 0 30 hm5C_associated_SNPs_45566 0 0 0 0 1 SZT2 chr1:43897043 5'GT 43897043 Upstream 6bp
chr10 70525793 70525793 1 + T C UCEC 70525803 + 70525783 70525823 41 TTGAGTGTCCTATTGGACTACAGATTAGAGGATAATAAAGA TTGAGTGTCCCATTGGACTACAGATTAGAGGATAATAAAGA < 41bp 1 0.233912594230355 1 0.276315093040466 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70525803 chr10:70525793 nonsynonymous SNV 0.872 4 11 hm5C_associated_SNPs_45567 0 0 1 0 1 CCAR1 chr10:70525836 5'GT 70525836 Upstream 44bp
chr9 131897104 131897104 1 + G A UCEC 131897102 + 131897082 131897122 41 GCAGCCTTCGCTGCTTTCCTCTGCTGTCTCTGCAAGATTGG GCAGCCTTCGCTGCTTTCCTCTACTGTCTCTGCAAGATTGG < 41bp 1 0.376906134297422 1 0.174069076776505 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPA ENSG00000119383 CDS Human protein_coding chr9:131897102 chr9:131897104 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_45569 0 0 1 0 2 PTPA chr9:131897074 3'AG 131897074 Downstream 31bp
chr9 131897104 131897104 1 + G A UCEC 131897102 + 131897082 131897122 41 GCAGCCTTCGCTGCTTTCCTCTGCTGTCTCTGCAAGATTGG GCAGCCTTCGCTGCTTTCCTCTACTGTCTCTGCAAGATTGG < 41bp 1 0.376906134297422 1 0.174069076776505 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPA ENSG00000119383 CDS Human protein_coding chr9:131897102 chr9:131897104 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_45569 0 0 1 0 2 PTPA chr9:131897173 5'GT 131897173 Upstream 70bp
chr19 36360657 36360657 1 + A G UCEC 36360676 + 36360656 36360696 41 CAGCGCTCTCGACGCTGTCTCCGGGACCCGCAGCGCGTGCT CGGCGCTCTCGACGCTGTCTCCGGGACCCGCAGCGCGTGCT < 41bp 1 0.585023528519326 1 0.918009638786316 experiment 0.829952942961348 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control APLP1 ENSG00000105290 CDS Human protein_coding chr19:36360676 chr19:36360657 nonsynonymous SNV 0.889 4 2 hm5C_associated_SNPs_45570 0 0 0 0 3 APLP1 chr19:36360569 3'AG 36360569 Downstream 89bp
chr19 36360657 36360657 1 + A G UCEC 36360676 + 36360656 36360696 41 CAGCGCTCTCGACGCTGTCTCCGGGACCCGCAGCGCGTGCT CGGCGCTCTCGACGCTGTCTCCGGGACCCGCAGCGCGTGCT < 41bp 1 0.585023528519326 1 0.918009638786316 experiment 0.829952942961348 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control APLP1 ENSG00000105290 CDS Human protein_coding chr19:36360676 chr19:36360657 nonsynonymous SNV 0.889 4 2 hm5C_associated_SNPs_45570 0 0 0 0 3 APLP1 chr19:36360651 3'AG 36360651 Downstream 7bp
chr19 36360657 36360657 1 + A G UCEC 36360676 + 36360656 36360696 41 CAGCGCTCTCGACGCTGTCTCCGGGACCCGCAGCGCGTGCT CGGCGCTCTCGACGCTGTCTCCGGGACCCGCAGCGCGTGCT < 41bp 1 0.585023528519326 1 0.918009638786316 experiment 0.829952942961348 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control APLP1 ENSG00000105290 CDS Human protein_coding chr19:36360676 chr19:36360657 nonsynonymous SNV 0.889 4 2 hm5C_associated_SNPs_45570 0 0 0 0 3 APLP1 chr19:36360712 5'GT 36360712 Upstream 56bp
chr5 153709263 153709263 1 + C T UCEC 153709248 + 153709228 153709268 41 CAGTGTGCTCAATCGCTCGCCTCCAGAGCTGGTCGCCGAGA CAGTGTGCTCAATCGCTCGCCTCCAGAGCTGGTCGTCGAGA < 41bp 1 0.591161438292626 1 0.919673085212708 experiment 0.817677123414748 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153709248 chr5:153709263 nonsynonymous SNV 0.809 1 36 hm5C_associated_SNPs_45571 0 0 0 0 1 GALNT10 chr5:153709298 5'GT 153709298 Upstream 36bp
chr1 59811984 59811984 1 + A G UCEC 59811996 + 59811976 59812016 41 ACAGGATCAATGAGACCAAGCACAGTGTCCTCCAGTACGTC ACAGGATCGATGAGACCAAGCACAGTGTCCTCCAGTACGTC < 41bp 1 0.504128910425562 1 0.0629615783691406 experiment 0.991742179148877 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FGGY ENSG00000172456 CDS Human protein_coding chr1:59811996 chr1:59811984 nonsynonymous SNV 0.121 4 9 hm5C_associated_SNPs_45573 0 0 0 0 2 FGGY chr1:59811919 3'AG 59811919 Downstream 66bp
chr1 59811984 59811984 1 + A G UCEC 59811996 + 59811976 59812016 41 ACAGGATCAATGAGACCAAGCACAGTGTCCTCCAGTACGTC ACAGGATCGATGAGACCAAGCACAGTGTCCTCCAGTACGTC < 41bp 1 0.504128910425562 1 0.0629615783691406 experiment 0.991742179148877 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FGGY ENSG00000172456 CDS Human protein_coding chr1:59811996 chr1:59811984 nonsynonymous SNV 0.121 4 9 hm5C_associated_SNPs_45573 0 0 0 0 2 FGGY chr1:59812070 5'GT 59812070 Upstream 87bp
chr20 2635156 2635156 1 + C T UCEC 2635143 + 2635123 2635163 41 TACTCTTGGGAGTTGGGGATCCCAAGATTGGTGCCGCAATA TACTCTTGGGAGTTGGGGATCCCAAGATTGGTGTCGCAATA < 41bp 1 0.564176668974004 1 0.177801549434662 experiment 0.871646662051992 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635143 chr20:2635156 nonsynonymous SNV 0.988 2 34 hm5C_associated_SNPs_45574 0 0 1 0 2 NOP56 chr20:2635060 3'AG 2635060 Downstream 97bp
chr20 2635156 2635156 1 + C T UCEC 2635143 + 2635123 2635163 41 TACTCTTGGGAGTTGGGGATCCCAAGATTGGTGCCGCAATA TACTCTTGGGAGTTGGGGATCCCAAGATTGGTGTCGCAATA < 41bp 1 0.564176668974004 1 0.177801549434662 experiment 0.871646662051992 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635143 chr20:2635156 nonsynonymous SNV 0.988 2 34 hm5C_associated_SNPs_45574 0 0 1 0 2 NOP56 chr20:2635221 5'GT 2635221 Upstream 66bp
chr20 2635156 2635156 1 + C T UCEC 2635157 + 2635137 2635177 41 GGGGATCCCAAGATTGGTGCCGCAATACAGGAGGAGTTAGG GGGGATCCCAAGATTGGTGTCGCAATACAGGAGGAGTTAGG < 41bp 1 0.642319342325029 1 0.614174604415894 experiment 0.715361315349941 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635157 chr20:2635156 nonsynonymous SNV 0.988 2 20 hm5C_associated_SNPs_45575 0 0 1 0 2 NOP56 chr20:2635060 3'AG 2635060 Downstream 97bp
chr20 2635156 2635156 1 + C T UCEC 2635157 + 2635137 2635177 41 GGGGATCCCAAGATTGGTGCCGCAATACAGGAGGAGTTAGG GGGGATCCCAAGATTGGTGTCGCAATACAGGAGGAGTTAGG < 41bp 1 0.642319342325029 1 0.614174604415894 experiment 0.715361315349941 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635157 chr20:2635156 nonsynonymous SNV 0.988 2 20 hm5C_associated_SNPs_45575 0 0 1 0 2 NOP56 chr20:2635221 5'GT 2635221 Upstream 66bp
chr1 6271124 6271124 1 + C T UCEC 6271142 + 6271122 6271162 41 GCCACTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTG GCTACTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTG < 41bp 1 0.432019626959445 1 0.265682756900787 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF207 ENSG00000158286 CDS Human protein_coding chr1:6271142 chr1:6271124 nonsynonymous SNV 0.864 3 3 hm5C_associated_SNPs_45580 0 0 1 0 2 RNF207 chr1:6271081 3'AG 6271081 Downstream 44bp
chr1 6271124 6271124 1 + C T UCEC 6271142 + 6271122 6271162 41 GCCACTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTG GCTACTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTG < 41bp 1 0.432019626959445 1 0.265682756900787 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF207 ENSG00000158286 CDS Human protein_coding chr1:6271142 chr1:6271124 nonsynonymous SNV 0.864 3 3 hm5C_associated_SNPs_45580 0 0 1 0 2 RNF207 chr1:6271178 5'GT 6271178 Upstream 55bp
chr12 6978336 6978336 1 + G A UCEC 6978340 + 6978320 6978360 41 AAGGCATGTCTTTGGGGAGTCAGATGAGGTTAGTAGCCAAG AAGGCATGTCTTTGGGAAGTCAGATGAGGTTAGTAGCCAAG < 41bp 1 0.470152982430068 1 0.704167068004608 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TPI1 ENSG00000111669 CDS Human protein_coding chr12:6978340 chr12:6978336 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_45581 0 0 1 0 2 TPI1 chr12:6978263 3'AG 6978263 Downstream 74bp
chr12 6978336 6978336 1 + G A UCEC 6978340 + 6978320 6978360 41 AAGGCATGTCTTTGGGGAGTCAGATGAGGTTAGTAGCCAAG AAGGCATGTCTTTGGGAAGTCAGATGAGGTTAGTAGCCAAG < 41bp 1 0.470152982430068 1 0.704167068004608 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TPI1 ENSG00000111669 CDS Human protein_coding chr12:6978340 chr12:6978336 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_45581 0 0 1 0 2 TPI1 chr12:6978347 5'GT 6978347 Upstream 12bp
chr16 56973820 56973820 1 + G T UCEC 56973818 + 56973798 56973838 41 TTATTTTAGTTTAGCAGCCACTGCTGCATCAGGGGCTTTTG TTATTTTAGTTTAGCAGCCACTTCTGCATCAGGGGCTTTTG < 41bp 1 0.141276816764859 1 0.122068285942078 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56973818 chr16:56973820 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_45582 0 0 1 0 1 HERPUD1 chr16:56973807 3'AG 56973807 Downstream 14bp
chr21 40191653 40191653 1 + A G UCEC 40191635 + 40191615 40191655 41 TACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACC TACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAGCC < 41bp 1 0.234629531303422 1 0.224783390760422 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191635 chr21:40191653 synonymous SNV . 0 39 hm5C_associated_SNPs_45583 0 0 0 0 1 ETS2 chr21:40191690 5'GT 40191690 Upstream 38bp
chr21 40191653 40191653 1 + A G UCEC 40191636 + 40191616 40191656 41 ACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACCA ACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAGCCA < 41bp 1 0.459178120100375 1 0.533065557479858 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191636 chr21:40191653 synonymous SNV . 0 38 hm5C_associated_SNPs_45584 0 0 0 0 1 ETS2 chr21:40191690 5'GT 40191690 Upstream 38bp
chr21 40191653 40191653 1 + A G UCEC 40191637 + 40191617 40191657 41 CATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACCAG CATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAGCCAG < 41bp 1 0.688707195594056 1 0.798409700393677 experiment 0.622585608811888 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191637 chr21:40191653 synonymous SNV . 0 37 hm5C_associated_SNPs_45585 0 0 0 0 1 ETS2 chr21:40191690 5'GT 40191690 Upstream 38bp
chr19 42862325 42862325 1 + G A UCEC 42862330 + 42862310 42862350 41 TCTGCTGTCTACCACGAGGCCACCGACTCCCTCTACGTGTT TCTGCTGTCTACCACAAGGCCACCGACTCCCTCTACGTGTT < 41bp 1 0.228615746576601 1 0.0367600917816162 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42862330 chr19:42862325 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_45586 0 0 0 0 1 MEGF8 chr19:42862296 3'AG 42862296 Downstream 30bp
chr19 42862325 42862325 1 + G A UCEC 42862340 + 42862320 42862360 41 ACCACGAGGCCACCGACTCCCTCTACGTGTTTGGGGGGTTC ACCACAAGGCCACCGACTCCCTCTACGTGTTTGGGGGGTTC < 41bp 1 0.346542612016384 1 0.383200526237488 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42862340 chr19:42862325 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_45587 0 0 0 0 1 MEGF8 chr19:42862296 3'AG 42862296 Downstream 30bp
chr13 111111172 111111172 1 + C T UCEC 111111171 + 111111151 111111191 41 ACGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAG ACGAAGCTATCAAAGGTCTTCTGGGACTGCCAGGACCCAAG < 41bp 1 0.52473526765133 1 0.438805609941483 experiment 0.95052946469734 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111171 chr13:111111172 nonsynonymous SNV 0.040 4 22 hm5C_associated_SNPs_45588 0 0 1 0 1 COL4A2 chr13:111111118 3'AG 111111118 Downstream 55bp
chr9 33026979 33026979 1 + G T UCEC 33026973 + 33026953 33026993 41 TTGGAGGAGGAGGAAGGATGCAGAGAGAAAGGAGAGGTAAG TTGGAGGAGGAGGAAGGATGCAGAGATAAAGGAGAGGTAAG < 41bp 1 0.702648180776944 1 0.839997291564941 experiment 0.594703638446112 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DNAJA1 ENSG00000086061 CDS Human protein_coding chr9:33026973 chr9:33026979 stopgain 0.998 1 27 hm5C_associated_SNPs_45589 0 0 1 0 1 DNAJA1 chr9:33026988 5'GT 33026988 Upstream 10bp
chr12 57922979 57922979 1 + C T UCEC 57922978 + 57922958 57922998 41 CCTCCCCGGGCCCGCCCTGGCCGTCCTGCCAAAAACAAGAG CCTCCCCGGGCCCGCCCTGGCTGTCCTGCCAAAAACAAGAG < 41bp 1 0.168939641184191 1 0.155006855726242 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57922978 chr12:57922979 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_45590 0 0 1 0 1 MBD6 chr12:57922943 3'AG 57922943 Downstream 37bp
chr2 236403459 236403459 1 + G T UCEC 236403477 + 236403457 236403497 41 CAGAACCAGATCCGGGAGCACGTCATCGCCATCGAAGGTGA CATAACCAGATCCGGGAGCACGTCATCGCCATCGAAGGTGA < 41bp 1 0.424460252379028 1 0.23746919631958 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236403477 chr2:236403459 nonsynonymous SNV 1.000 2 3 hm5C_associated_SNPs_45591 0 0 1 0 1 AGAP1 chr2:236403493 5'GT 236403493 Upstream 35bp
chr17 48148800 48148800 1 + C T UCEC 48148790 + 48148770 48148810 41 TTGCTGAGCCAGGAGGCAGGCGGAGACCTGCGGAGGAGGCA TTGCTGAGCCAGGAGGCAGGCGGAGACCTGTGGAGGAGGCA < 41bp 1 0.442010552627767 1 0.85346919298172 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48148790 chr17:48148800 nonsynonymous SNV 0.989 1 31 hm5C_associated_SNPs_45592 0 0 0 0 1 ITGA3 chr17:48148882 5'GT 48148882 Upstream 83bp
chr1 100740453 100740453 1 + T G UCEC 100740467 + 100740447 100740487 41 ATAAATTTAACTGAGCGTGGCTGTGTGACTAAGATATATGG ATAAATGTAACTGAGCGTGGCTGTGTGACTAAGATATATGG < 41bp 1 0.266281239723778 1 0.135373175144196 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RTCA ENSG00000137996 CDS Human protein_coding chr1:100740467 chr1:100740453 nonsynonymous SNV 0.979 1 7 hm5C_associated_SNPs_45593 0 0 1 0 2 RTCA chr1:100740380 3'AG 100740380 Downstream 74bp
chr1 100740453 100740453 1 + T G UCEC 100740467 + 100740447 100740487 41 ATAAATTTAACTGAGCGTGGCTGTGTGACTAAGATATATGG ATAAATGTAACTGAGCGTGGCTGTGTGACTAAGATATATGG < 41bp 1 0.266281239723778 1 0.135373175144196 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RTCA ENSG00000137996 CDS Human protein_coding chr1:100740467 chr1:100740453 nonsynonymous SNV 0.979 1 7 hm5C_associated_SNPs_45593 0 0 1 0 2 RTCA chr1:100740521 5'GT 100740521 Upstream 69bp
chr10 73566025 73566025 1 + T C UCEC 73566026 + 73566006 73566046 41 GATGACAACGAACCCCTTTTCGTGAGGCCTCCAGTGAGCTT GATGACAACGAACCCCTTTCCGTGAGGCCTCCAGTGAGCTT < 41bp 1 0.51315722386448 1 0.282740831375122 experiment 0.97368555227104 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH23 ENSG00000107736 CDS Human protein_coding chr10:73566026 chr10:73566025 nonsynonymous SNV 0.997 4 20 hm5C_associated_SNPs_45594 0 0 0 0 1 CDH23 chr10:73566038 5'GT 73566038 Upstream 14bp
chr1 161179359 161179359 1 + T G UCEC 161179358 + 161179338 161179378 41 CTTGGGGCCATGACCCCTTTCTTCTGGCTGTTTGAAGAAAG CTTGGGGCCATGACCCCTTTCGTCTGGCTGTTTGAAGAAAG < 41bp 1 0.317160257086913 1 0.321732372045517 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161179358 chr1:161179359 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_45595 0 0 1 0 2 NDUFS2 chr1:161179273 3'AG 161179273 Downstream 87bp
chr1 161179359 161179359 1 + T G UCEC 161179358 + 161179338 161179378 41 CTTGGGGCCATGACCCCTTTCTTCTGGCTGTTTGAAGAAAG CTTGGGGCCATGACCCCTTTCGTCTGGCTGTTTGAAGAAAG < 41bp 1 0.317160257086913 1 0.321732372045517 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161179358 chr1:161179359 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_45595 0 0 1 0 2 NDUFS2 chr1:161179385 5'GT 161179385 Upstream 27bp
chr6 7579525 7579525 1 + C T UCEC 7579519 + 7579499 7579539 41 ATTCCACAGCTGAAAAATACCAAGATCGAAGTTTTGGAAGA ATTCCACAGCTGAAAAATACCAAGATTGAAGTTTTGGAAGA < 41bp 1 0.753422926485943 1 0.479079335927963 experiment 0.493154147028114 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7579519 chr6:7579525 synonymous SNV . 0 27 hm5C_associated_SNPs_45599 0 0 1 0 1 DSP chr6:7579508 3'AG 7579508 Downstream 18bp
chr20 55049793 55049793 1 + T G UCEC 55049773 + 55049753 55049793 41 GTCATTGAATTTCTCTTGGACAAATCTGCAGAAAAGGCTCT GTCATTGAATTTCTCTTGGACAAATCTGCAGAAAAGGCTCG < 41bp 1 0.135736007590217 1 0.189686477184296 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55049773 chr20:55049793 nonsynonymous SNV 0.999 0 41 hm5C_associated_SNPs_45600 0 0 1 0 2 RTFDC1 chr20:55049734 3'AG 55049734 Downstream 60bp
chr20 55049793 55049793 1 + T G UCEC 55049773 + 55049753 55049793 41 GTCATTGAATTTCTCTTGGACAAATCTGCAGAAAAGGCTCT GTCATTGAATTTCTCTTGGACAAATCTGCAGAAAAGGCTCG < 41bp 1 0.135736007590217 1 0.189686477184296 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55049773 chr20:55049793 nonsynonymous SNV 0.999 0 41 hm5C_associated_SNPs_45600 0 0 1 0 2 RTFDC1 chr20:55049827 5'GT 55049827 Upstream 35bp
chr1 22336319 22336319 1 + G A UCEC 22336303 + 22336283 22336323 41 GCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTC GCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCAAGTC < 41bp 1 0.171428780278848 1 0.201912462711334 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336303 chr1:22336319 nonsynonymous SNV 0.129 3 37 hm5C_associated_SNPs_45601 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 32bp
chr1 22336319 22336319 1 + G A UCEC 22336304 + 22336284 22336324 41 CTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCT CTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCAAGTCT < 41bp 1 0.297513290009553 1 0.285536766052246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336304 chr1:22336319 nonsynonymous SNV 0.129 3 36 hm5C_associated_SNPs_45602 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 32bp
chr1 22336319 22336319 1 + G A UCEC 22336305 + 22336285 22336325 41 TGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTC TGCAACTTCATCTGGAAGCCCACGGTGTTCACTCAAGTCTC < 41bp 1 0.756289272958332 1 0.420782804489136 experiment 0.487421454083336 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336305 chr1:22336319 nonsynonymous SNV 0.129 3 35 hm5C_associated_SNPs_45603 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 32bp
chr1 22336319 22336319 1 + G A UCEC 22336307 + 22336287 22336327 41 CAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCG CAACTTCATCTGGAAGCCCACGGTGTTCACTCAAGTCTCCG < 41bp 1 0.413445888247577 1 0.377671360969543 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336307 chr1:22336319 nonsynonymous SNV 0.129 3 33 hm5C_associated_SNPs_45604 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 32bp
chr1 22336319 22336319 1 + G A UCEC 22336314 + 22336294 22336334 41 ATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCAT ATCTGGAAGCCCACGGTGTTCACTCAAGTCTCCGCCTTCAT < 41bp 1 0.29052568025871 1 0.00860661268234253 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336314 chr1:22336319 nonsynonymous SNV 0.129 3 26 hm5C_associated_SNPs_45605 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 32bp
chr1 22336319 22336319 1 + G A UCEC 22336318 + 22336298 22336338 41 GGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGAC GGAAGCCCACGGTGTTCACTCAAGTCTCCGCCTTCATCGAC < 41bp 1 0.709919083623775 1 0.212781876325607 experiment 0.58016183275245 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336318 chr1:22336319 nonsynonymous SNV 0.129 3 22 hm5C_associated_SNPs_45606 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 32bp
chr1 22336319 22336319 1 + G A UCEC 22336323 + 22336303 22336343 41 CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT CCCACGGTGTTCACTCAAGTCTCCGCCTTCATCGACTGGAT < 41bp 1 0.665514582346039 1 0.130709260702133 experiment 0.668970835307923 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336323 chr1:22336319 nonsynonymous SNV 0.129 3 17 hm5C_associated_SNPs_45607 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 32bp
chr1 22336319 22336319 1 + G A UCEC 22336326 + 22336306 22336346 41 ACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGA ACGGTGTTCACTCAAGTCTCCGCCTTCATCGACTGGATTGA < 41bp 1 0.353296755900086 1 0.0302415788173676 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336326 chr1:22336319 nonsynonymous SNV 0.129 3 14 hm5C_associated_SNPs_45608 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 32bp
chr1 22336319 22336319 1 + G A UCEC 22336329 + 22336309 22336349 41 GTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGA GTGTTCACTCAAGTCTCCGCCTTCATCGACTGGATTGAGGA < 41bp 1 0.356151970397585 1 0.549148082733154 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336329 chr1:22336319 nonsynonymous SNV 0.129 3 11 hm5C_associated_SNPs_45609 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 32bp
chr1 22336319 22336319 1 + G A UCEC 22336332 + 22336312 22336352 41 TTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGT TTCACTCAAGTCTCCGCCTTCATCGACTGGATTGAGGAGGT < 41bp 1 0.333047857920815 1 0.190758347511292 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336332 chr1:22336319 nonsynonymous SNV 0.129 3 8 hm5C_associated_SNPs_45610 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 32bp
chr1 22336319 22336319 1 + G A UCEC 22336335 + 22336315 22336355 41 ACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGTGAG ACTCAAGTCTCCGCCTTCATCGACTGGATTGAGGAGGTGAG < 41bp 1 0.626457568932732 1 0.462703347206116 experiment 0.747084862134536 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336335 chr1:22336319 nonsynonymous SNV 0.129 3 5 hm5C_associated_SNPs_45611 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 32bp
chrX 149896178 149896178 1 + T C UCEC 149896183 + 149896163 149896203 41 ATTTTATCCTTGATGTTCCCCTTGGAGTGATCAGCAGAGTG ATTTTATCCTTGATGCTCCCCTTGGAGTGATCAGCAGAGTG < 41bp 1 0.300782947754118 1 0.037448912858963 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149896183 chrX:149896178 nonsynonymous SNV 0.994 1 16 hm5C_associated_SNPs_45618 0 0 1 0 2 MTMR1 chrX:149896156 3'AG 149896156 Downstream 23bp
chrX 149896178 149896178 1 + T C UCEC 149896183 + 149896163 149896203 41 ATTTTATCCTTGATGTTCCCCTTGGAGTGATCAGCAGAGTG ATTTTATCCTTGATGCTCCCCTTGGAGTGATCAGCAGAGTG < 41bp 1 0.300782947754118 1 0.037448912858963 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149896183 chrX:149896178 nonsynonymous SNV 0.994 1 16 hm5C_associated_SNPs_45618 0 0 1 0 2 MTMR1 chrX:149896263 5'GT 149896263 Upstream 86bp
chr2 71297699 71297699 1 + C T UCEC 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGATGGATTGAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.589988907567841 1 0.21455904841423 experiment 0.820022184864319 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297699 synonymous SNV . 0 16 hm5C_associated_SNPs_45619 0 0 1 2 2 NAGK chr2:71297632 3'AG 71297632 Downstream 68bp
chr2 71297699 71297699 1 + C T UCEC 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGATGGATTGAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.589988907567841 1 0.21455904841423 experiment 0.820022184864319 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297699 synonymous SNV . 0 16 hm5C_associated_SNPs_45619 0 0 1 2 2 NAGK chr2:71297716 5'GT 71297716 Upstream 18bp
chr9 135929306 135929306 1 + G A UCEC 135929296 + 135929276 135929316 41 ATGCCAAGATTTATCAAGTCCTCGATTTCCGAATCCGTTGT ATGCCAAGATTTATCAAGTCCTCGATTTCCAAATCCGTTGT < 41bp 1 0.790014130436979 1 0.929149508476257 experiment 0.419971739126042 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135929296 chr9:135929306 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_45620 0 0 1 0 2 GTF3C5 chr9:135929215 3'AG 135929215 Downstream 92bp
chr9 135929306 135929306 1 + G A UCEC 135929296 + 135929276 135929316 41 ATGCCAAGATTTATCAAGTCCTCGATTTCCGAATCCGTTGT ATGCCAAGATTTATCAAGTCCTCGATTTCCAAATCCGTTGT < 41bp 1 0.790014130436979 1 0.929149508476257 experiment 0.419971739126042 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135929296 chr9:135929306 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_45620 0 0 1 0 2 GTF3C5 chr9:135929329 5'GT 135929329 Upstream 24bp
chrX 152770755 152770755 1 + A G UCEC 152770746 + 152770726 152770766 41 CTGACACCACGCTGCTGGACCTGCAGAACAACGACATCTCC CTGACACCACGCTGCTGGACCTGCAGAACGACGACATCTCC < 41bp 1 0.660034558218777 1 0.502148151397705 experiment 0.679930883562447 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BGN ENSG00000182492 CDS Human protein_coding chrX:152770746 chrX:152770755 nonsynonymous SNV 0.970 4 30 hm5C_associated_SNPs_45621 0 0 0 0 2 BGN chrX:152770696 3'AG 152770696 Downstream 60bp
chrX 152770755 152770755 1 + A G UCEC 152770746 + 152770726 152770766 41 CTGACACCACGCTGCTGGACCTGCAGAACAACGACATCTCC CTGACACCACGCTGCTGGACCTGCAGAACGACGACATCTCC < 41bp 1 0.660034558218777 1 0.502148151397705 experiment 0.679930883562447 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BGN ENSG00000182492 CDS Human protein_coding chrX:152770746 chrX:152770755 nonsynonymous SNV 0.970 4 30 hm5C_associated_SNPs_45621 0 0 0 0 2 BGN chrX:152770808 5'GT 152770808 Upstream 54bp
chr2 109347893 109347893 1 + A G UCEC 109347873 + 109347853 109347893 41 ACTGATGGAAGAGCAAAATACTGGCTTGAAAGAGCAGCCAA ACTGATGGAAGAGCAAAATACTGGCTTGAAAGAGCAGCCAG < 41bp 1 0.675467122974801 1 0.267316818237305 experiment 0.649065754050398 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347873 chr2:109347893 nonsynonymous SNV 1.000 0 41 hm5C_associated_SNPs_45622 0 0 1 0 1 RANBP2 chr2:109347930 5'GT 109347930 Upstream 38bp
chr2 109347893 109347893 1 + A G UCEC 109347887 + 109347867 109347907 41 AAAATACTGGCTTGAAAGAGCAGCCAAACTTTTCCCAGGAA AAAATACTGGCTTGAAAGAGCAGCCAGACTTTTCCCAGGAA < 41bp 1 0.204659481910533 1 0.520636916160583 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347887 chr2:109347893 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_45623 0 0 1 0 1 RANBP2 chr2:109347930 5'GT 109347930 Upstream 38bp
chr2 109347893 109347893 1 + A G UCEC 109347890 + 109347870 109347910 41 ATACTGGCTTGAAAGAGCAGCCAAACTTTTCCCAGGAAGTC ATACTGGCTTGAAAGAGCAGCCAGACTTTTCCCAGGAAGTC < 41bp 1 0.173612187508738 1 0.372537910938263 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347890 chr2:109347893 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_45624 0 0 1 0 1 RANBP2 chr2:109347930 5'GT 109347930 Upstream 38bp
chr2 109347893 109347893 1 + A G UCEC 109347895 + 109347875 109347915 41 GGCTTGAAAGAGCAGCCAAACTTTTCCCAGGAAGTCCTGCA GGCTTGAAAGAGCAGCCAGACTTTTCCCAGGAAGTCCTGCA < 41bp 1 0.0410987527879994 1 0.0383966565132141 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347895 chr2:109347893 nonsynonymous SNV 1.000 0 19 hm5C_associated_SNPs_45625 0 0 1 0 1 RANBP2 chr2:109347930 5'GT 109347930 Upstream 38bp
chr2 109347893 109347893 1 + A G UCEC 109347901 + 109347881 109347921 41 AAAGAGCAGCCAAACTTTTCCCAGGAAGTCCTGCAATTTAT AAAGAGCAGCCAGACTTTTCCCAGGAAGTCCTGCAATTTAT < 41bp 1 0.313475235705395 1 0.419338285923004 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347901 chr2:109347893 nonsynonymous SNV 1.000 0 13 hm5C_associated_SNPs_45626 0 0 1 0 1 RANBP2 chr2:109347930 5'GT 109347930 Upstream 38bp
chr2 109347893 109347893 1 + A G UCEC 109347902 + 109347882 109347922 41 AAGAGCAGCCAAACTTTTCCCAGGAAGTCCTGCAATTTATA AAGAGCAGCCAGACTTTTCCCAGGAAGTCCTGCAATTTATA < 41bp 1 0.675387504012538 1 0.834830820560455 experiment 0.649224991974924 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347902 chr2:109347893 nonsynonymous SNV 1.000 0 12 hm5C_associated_SNPs_45627 0 0 1 0 1 RANBP2 chr2:109347930 5'GT 109347930 Upstream 38bp
chr2 109347893 109347893 1 + A G UCEC 109347910 + 109347890 109347930 41 CCAAACTTTTCCCAGGAAGTCCTGCAATTTATAAACTAAAG CCAGACTTTTCCCAGGAAGTCCTGCAATTTATAAACTAAAG < 41bp 1 0.0469248034494856 1 0.163049012422562 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347910 chr2:109347893 nonsynonymous SNV 1.000 0 4 hm5C_associated_SNPs_45628 0 0 1 0 1 RANBP2 chr2:109347930 5'GT 109347930 Upstream 38bp
chr2 109347893 109347893 1 + A G UCEC 109347911 + 109347891 109347931 41 CAAACTTTTCCCAGGAAGTCCTGCAATTTATAAACTAAAGG CAGACTTTTCCCAGGAAGTCCTGCAATTTATAAACTAAAGG < 41bp 1 0.302294654947763 1 0.240668565034866 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347911 chr2:109347893 nonsynonymous SNV 1.000 0 3 hm5C_associated_SNPs_45629 0 0 1 0 1 RANBP2 chr2:109347930 5'GT 109347930 Upstream 38bp
chr1 198222179 198222179 1 + C A UCEC 198222182 + 198222162 198222202 41 AATTACAGAAGGCCTTACGACCGGATATGGGCTATAATACA AATTACAGAAGGCCTTAAGACCGGATATGGGCTATAATACA < 41bp 1 0.670548567343045 1 0.645240187644958 experiment 0.65890286531391 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NEK7 ENSG00000151414 CDS Human protein_coding chr1:198222182 chr1:198222179 synonymous SNV . 0 18 hm5C_associated_SNPs_45630 0 0 1 0 1 NEK7 chr1:198222170 3'AG 198222170 Downstream 10bp
chr1 198222179 198222179 1 + C A UCEC 198222183 + 198222163 198222203 41 ATTACAGAAGGCCTTACGACCGGATATGGGCTATAATACAT ATTACAGAAGGCCTTAAGACCGGATATGGGCTATAATACAT < 41bp 1 0.466894797553177 1 0.531422555446625 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NEK7 ENSG00000151414 CDS Human protein_coding chr1:198222183 chr1:198222179 synonymous SNV . 0 17 hm5C_associated_SNPs_45631 0 0 1 0 1 NEK7 chr1:198222170 3'AG 198222170 Downstream 10bp
chr8 22054868 22054868 1 + T C UCEC 22054853 + 22054833 22054873 41 GAAGCCCGAGGTCATCACCTCCCAGTACAACAACATGCGCG GAAGCCCGAGGTCATCACCTCCCAGTACAACAACACGCGCG < 41bp 1 0.17396828294462 1 0.314634561538696 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22054853 chr8:22054868 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_45632 0 0 1 0 1 BMP1 chr8:22054933 5'GT 22054933 Upstream 66bp
chr1 171527202 171527202 1 + A G UCEC 171527220 + 171527200 171527240 41 ACAGTCACATGGCACTCTGACAGCTGAATTATGGGATAACA ACGGTCACATGGCACTCTGACAGCTGAATTATGGGATAACA < 41bp 1 0.313266284874842 1 0.486650735139847 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171527220 chr1:171527202 nonsynonymous SNV 0.998 1 3 hm5C_associated_SNPs_45636 0 0 1 0 1 PRRC2C chr1:171527282 5'GT 171527282 Upstream 81bp
chr16 70589097 70589097 1 + C T UCEC 70589086 + 70589066 70589106 41 TTGCCCTGACAGGAGGAGAGCTGGTCTATTTCGAGATGGAT TTGCCCTGACAGGAGGAGAGCTGGTCTATTTTGAGATGGAT < 41bp 1 0.245480611443419 1 0.166226148605347 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589086 chr16:70589097 synonymous SNV . 0 32 hm5C_associated_SNPs_45639 0 0 1 0 1 SF3B3 chr16:70589109 5'GT 70589109 Upstream 13bp
chr16 70589097 70589097 1 + C T UCEC 70589091 + 70589071 70589111 41 CTGACAGGAGGAGAGCTGGTCTATTTCGAGATGGATCCTGT CTGACAGGAGGAGAGCTGGTCTATTTTGAGATGGATCCTGT < 41bp 1 0.117828079560938 1 0.0688834190368652 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589091 chr16:70589097 synonymous SNV . 0 27 hm5C_associated_SNPs_45640 0 0 1 0 1 SF3B3 chr16:70589109 5'GT 70589109 Upstream 13bp
chr17 65735656 65735656 1 + C T UCEC 65735673 + 65735653 65735693 41 TTCCTGTACCTGAAGTGTAGCGAAAATGCTACTATGACTCT TTCTTGTACCTGAAGTGTAGCGAAAATGCTACTATGACTCT < 41bp 1 0.647361505634474 1 0.720992982387543 experiment 0.705276988731052 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65735673 chr17:65735656 synonymous SNV . 0 4 hm5C_associated_SNPs_45641 0 0 1 0 2 NOL11 chr17:65735632 3'AG 65735632 Downstream 25bp
chr17 65735656 65735656 1 + C T UCEC 65735673 + 65735653 65735693 41 TTCCTGTACCTGAAGTGTAGCGAAAATGCTACTATGACTCT TTCTTGTACCTGAAGTGTAGCGAAAATGCTACTATGACTCT < 41bp 1 0.647361505634474 1 0.720992982387543 experiment 0.705276988731052 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65735673 chr17:65735656 synonymous SNV . 0 4 hm5C_associated_SNPs_45641 0 0 1 0 2 NOL11 chr17:65735724 5'GT 65735724 Upstream 69bp
chr11 9459826 9459826 1 + G T UCEC 9459830 + 9459810 9459850 41 AGCTGAAGATGATGATGAAACCGGTAAGGGATTTTCAATGG AGCTGAAGATGATGATTAAACCGGTAAGGGATTTTCAATGG < 41bp 1 0.630512647940382 1 0.149759918451309 experiment 0.738974704119237 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9459830 chr11:9459826 stopgain 0.997 0 17 hm5C_associated_SNPs_45642 0 0 1 0 1 IPO7 chr11:9459832 5'GT 9459832 Upstream 7bp
chr11 9459826 9459826 1 + G T UCEC 9459831 + 9459811 9459851 41 GCTGAAGATGATGATGAAACCGGTAAGGGATTTTCAATGGA GCTGAAGATGATGATTAAACCGGTAAGGGATTTTCAATGGA < 41bp 1 0.711166007064791 1 0.231154412031174 experiment 0.577667985870419 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9459831 chr11:9459826 stopgain 0.997 0 16 hm5C_associated_SNPs_45643 0 0 1 0 1 IPO7 chr11:9459832 5'GT 9459832 Upstream 7bp
chr9 96411478 96411478 1 + G A UCEC 96411460 + 96411440 96411480 41 GCACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCGAG GCACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCAAG < 41bp 1 0.466195741183288 1 0.312393367290497 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96411460 chr9:96411478 nonsynonymous SNV 0.992 4 39 hm5C_associated_SNPs_45644 0 0 1 0 1 PHF2 chr9:96411494 5'GT 96411494 Upstream 17bp
chr7 100454568 100454568 1 + G A UCEC 100454584 + 100454564 100454604 41 CTGGGCCTTGTGGGTGGGGTCTGCACCCTGGGAGCCGGCCT CTGGACCTTGTGGGTGGGGTCTGCACCCTGGGAGCCGGCCT < 41bp 1 0.74846888306487 1 0.478496164083481 experiment 0.50306223387026 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC12A9 ENSG00000146828 CDS Human protein_coding chr7:100454584 chr7:100454568 nonsynonymous SNV 0.993 1 5 hm5C_associated_SNPs_45646 0 0 0 0 1 SLC12A9 chr7:100454490 3'AG 100454490 Downstream 79bp
chr13 77570182 77570182 1 + G A UCEC 77570189 + 77570169 77570209 41 TGGTGTAATCAAGGCGCTGCCTGCTTTTTTGAGGGAATTGA TGGTGTAATCAAGACGCTGCCTGCTTTTTTGAGGGAATTGA < 41bp 1 0.599364021987234 1 0.123994618654251 experiment 0.801271956025531 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLN5 ENSG00000102805 CDS Human protein_coding chr13:77570189 chr13:77570182 nonsynonymous SNV 0.951 5 14 hm5C_associated_SNPs_45647 0 0 1 0 1 CLN5 chr13:77570262 5'GT 77570262 Upstream 81bp
chr19 6742994 6742994 1 + T C UCEC 6743009 + 6742989 6743029 41 AACAGTCCTTCGTACAGATTCTCCAGGAGGTGAATGACTTT AACAGCCCTTCGTACAGATTCTCCAGGAGGTGAATGACTTT < 41bp 1 0.734404649014973 1 0.827800750732422 experiment 0.531190701970053 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6743009 chr19:6742994 nonsynonymous SNV 0.740 2 6 hm5C_associated_SNPs_45648 0 0 1 0 1 TRIP10 chr19:6742978 3'AG 6742978 Downstream 17bp
chr22 38028062 38028062 1 + G T UCEC 38028074 + 38028054 38028094 41 TCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTG TCCATTTTTCCCGGGACCCACTGCCAGGGCGCTCCGACGTG < 41bp 1 0.36547567972306 1 0.119824886322021 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38028074 chr22:38028062 nonsynonymous SNV 0.921 3 9 hm5C_associated_SNPs_45649 0 0 1 0 1 GGA1 chr22:38028003 3'AG 38028003 Downstream 60bp
chr1 162469799 162469799 1 + G A UCEC 162469797 + 162469777 162469817 41 TCTCCAAATGTGCCATCACGCTGTCTGTTGCTTGAACTCCT TCTCCAAATGTGCCATCACGCTATCTGTTGCTTGAACTCCT < 41bp 1 0.217926957975868 1 0.368896484375 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162469797 chr1:162469799 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_45650 0 0 1 0 1 UHMK1 chr1:162469745 3'AG 162469745 Downstream 55bp
chr3 47891205 47891205 1 + C T UCEC 47891200 + 47891180 47891220 41 CAGCGTCTTCGTCCGGGACTCCTCTCAGGTGCACCCGCTAG CAGCGTCTTCGTCCGGGACTCCTCTTAGGTGCACCCGCTAG < 41bp 1 0.142359691022515 1 0.283894032239914 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DHX30 ENSG00000132153 CDS Human protein_coding chr3:47891200 chr3:47891205 stopgain 0.996 0 26 hm5C_associated_SNPs_45651 0 0 1 0 1 DHX30 chr3:47891259 5'GT 47891259 Upstream 55bp
chr11 61722648 61722648 1 + G C UCEC 61722649 + 61722629 61722669 41 ATTGCGACAGCTACATCCAGCTCATCCCCATTTCCTTCGTG ATTGCGACAGCTACATCCACCTCATCCCCATTTCCTTCGTG < 41bp 1 0.218623761968681 1 0.0899466872215271 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61722649 chr11:61722648 nonsynonymous SNV 0.998 5 20 hm5C_associated_SNPs_45654 0 0 0 0 1 BEST1 chr11:61722673 5'GT 61722673 Upstream 26bp
chr1 39776663 39776663 1 + A G UCEC 39776662 + 39776642 39776682 41 GGACAATGCATTAAGGATTGCAGAGCAAGAGGTAAGCCCTA GGACAATGCATTAAGGATTGCGGAGCAAGAGGTAAGCCCTA < 41bp 1 0.220135101919957 1 0.690390586853027 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39776662 chr1:39776663 synonymous SNV . 0 22 hm5C_associated_SNPs_45657 0 0 1 0 1 MACF1 chr1:39776672 5'GT 39776672 Upstream 10bp
chr17 73058300 73058300 1 + C T UCEC 73058313 + 73058293 73058333 41 AATAATTCTACCAATGGCATCGTCATAGAGCCGAGCGAAAA AATAATTTTACCAATGGCATCGTCATAGAGCCGAGCGAAAA < 41bp 1 0.37569210928544 1 0.465017944574356 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KCTD2 ENSG00000180901 CDS Human protein_coding chr17:73058313 chr17:73058300 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_45658 0 0 1 0 2 KCTD2 chr17:73058215 3'AG 73058215 Downstream 86bp
chr17 73058300 73058300 1 + C T UCEC 73058313 + 73058293 73058333 41 AATAATTCTACCAATGGCATCGTCATAGAGCCGAGCGAAAA AATAATTTTACCAATGGCATCGTCATAGAGCCGAGCGAAAA < 41bp 1 0.37569210928544 1 0.465017944574356 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KCTD2 ENSG00000180901 CDS Human protein_coding chr17:73058313 chr17:73058300 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_45658 0 0 1 0 2 KCTD2 chr17:73058340 5'GT 73058340 Upstream 41bp
chr19 1395395 1395395 1 + C T UCEC 1395382 + 1395362 1395402 41 AAGCGAGACTGAGGCAAGGTCCCTGCAGGCTGCCCACCTAC AAGCGAGACTGAGGCAAGGTCCCTGCAGGCTGCTCACCTAC < 41bp 1 0.435536929564543 1 0.340341538190842 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDUFS7 ENSG00000115286 CDS Human protein_coding chr19:1395382 chr19:1395395 nonsynonymous SNV 0.499 4 34 hm5C_associated_SNPs_45659 0 0 1 0 1 NDUFS7 chr19:1395390 3'AG 1395390 Downstream 6bp
chr19 1395395 1395395 1 + C T UCEC 1395383 + 1395363 1395403 41 AGCGAGACTGAGGCAAGGTCCCTGCAGGCTGCCCACCTACG AGCGAGACTGAGGCAAGGTCCCTGCAGGCTGCTCACCTACG < 41bp 1 0.190442625085883 1 0.679533123970032 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDUFS7 ENSG00000115286 CDS Human protein_coding chr19:1395383 chr19:1395395 nonsynonymous SNV 0.499 4 33 hm5C_associated_SNPs_45660 0 0 1 0 1 NDUFS7 chr19:1395390 3'AG 1395390 Downstream 6bp
chr16 72141610 72141610 1 + T C UCEC 72141626 + 72141606 72141646 41 ATGCTCATCGTGTCCTGTGACATGGGCTGCAGCTCCGAGAT ATGCCCATCGTGTCCTGTGACATGGGCTGCAGCTCCGAGAT < 41bp 1 0.707310119401499 1 0.151933401823044 experiment 0.585379761197002 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72141626 chr16:72141610 nonsynonymous SNV 0.999 4 5 hm5C_associated_SNPs_45661 0 0 1 0 2 DHX38 chr16:72141544 3'AG 72141544 Downstream 67bp
chr16 72141610 72141610 1 + T C UCEC 72141626 + 72141606 72141646 41 ATGCTCATCGTGTCCTGTGACATGGGCTGCAGCTCCGAGAT ATGCCCATCGTGTCCTGTGACATGGGCTGCAGCTCCGAGAT < 41bp 1 0.707310119401499 1 0.151933401823044 experiment 0.585379761197002 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72141626 chr16:72141610 nonsynonymous SNV 0.999 4 5 hm5C_associated_SNPs_45661 0 0 1 0 2 DHX38 chr16:72141698 5'GT 72141698 Upstream 89bp
chr7 101821774 101821774 1 + G A UCEC 101821775 + 101821755 101821795 41 GCCATAGAGGTGCTGACCCGCTCCAGCCTAGAAGTTGAGTT GCCATAGAGGTGCTGACCCACTCCAGCCTAGAAGTTGAGTT < 41bp 1 0.530897632459439 1 0.846901178359985 experiment 0.938204735081122 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101821775 chr7:101821774 nonsynonymous SNV 0.998 0 20 hm5C_associated_SNPs_45662 0 0 1 0 2 CUX1 chr7:101821749 3'AG 101821749 Downstream 26bp
chr7 101821774 101821774 1 + G A UCEC 101821775 + 101821755 101821795 41 GCCATAGAGGTGCTGACCCGCTCCAGCCTAGAAGTTGAGTT GCCATAGAGGTGCTGACCCACTCCAGCCTAGAAGTTGAGTT < 41bp 1 0.530897632459439 1 0.846901178359985 experiment 0.938204735081122 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101821775 chr7:101821774 nonsynonymous SNV 0.998 0 20 hm5C_associated_SNPs_45662 0 0 1 0 2 CUX1 chr7:101821755 3'AG 101821755 Downstream 20bp
chr2 232573441 232573441 1 + A G UCEC 232573427 + 232573407 232573447 41 GTGCCCCACCATGTCAGACGCAGCCGTAGACACCAGCTCCG GTGCCCCACCATGTCAGACGCAGCCGTAGACACCGGCTCCG < 41bp 1 0.675215065750528 1 0.18489795923233 experiment 0.649569868498944 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232573427 chr2:232573441 nonsynonymous SNV 0.998 0 35 hm5C_associated_SNPs_45663 0 0 1 0 1 PTMA chr2:232573461 5'GT 232573461 Upstream 21bp
chr2 232573441 232573441 1 + A G UCEC 232573430 + 232573410 232573450 41 CCCCACCATGTCAGACGCAGCCGTAGACACCAGCTCCGAAA CCCCACCATGTCAGACGCAGCCGTAGACACCGGCTCCGAAA < 41bp 1 0.52167543702631 1 0.318287968635559 experiment 0.95664912594738 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232573430 chr2:232573441 nonsynonymous SNV 0.998 0 32 hm5C_associated_SNPs_45664 0 0 1 0 1 PTMA chr2:232573461 5'GT 232573461 Upstream 21bp
chr2 232573441 232573441 1 + A G UCEC 232573440 + 232573420 232573460 41 TCAGACGCAGCCGTAGACACCAGCTCCGAAATCACCACCAA TCAGACGCAGCCGTAGACACCGGCTCCGAAATCACCACCAA < 41bp 1 0.787567861149961 1 0.580470621585846 experiment 0.424864277700077 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232573440 chr2:232573441 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_45665 0 0 1 0 1 PTMA chr2:232573461 5'GT 232573461 Upstream 21bp
chr2 232573441 232573441 1 + A G UCEC 232573443 + 232573423 232573463 41 GACGCAGCCGTAGACACCAGCTCCGAAATCACCACCAAGGT GACGCAGCCGTAGACACCGGCTCCGAAATCACCACCAAGGT < 41bp 1 0.589866046813538 1 0.372251391410828 experiment 0.820267906372925 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232573443 chr2:232573441 nonsynonymous SNV 0.998 0 19 hm5C_associated_SNPs_45666 0 0 1 0 1 PTMA chr2:232573461 5'GT 232573461 Upstream 21bp
chr2 232573441 232573441 1 + A G UCEC 232573445 + 232573425 232573465 41 CGCAGCCGTAGACACCAGCTCCGAAATCACCACCAAGGTGA CGCAGCCGTAGACACCGGCTCCGAAATCACCACCAAGGTGA < 41bp 1 0.654322420304273 1 0.177597880363464 experiment 0.691355159391454 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232573445 chr2:232573441 nonsynonymous SNV 0.998 0 17 hm5C_associated_SNPs_45667 0 0 1 0 1 PTMA chr2:232573461 5'GT 232573461 Upstream 21bp
chr2 232573441 232573441 1 + A G UCEC 232573446 + 232573426 232573466 41 GCAGCCGTAGACACCAGCTCCGAAATCACCACCAAGGTGAG GCAGCCGTAGACACCGGCTCCGAAATCACCACCAAGGTGAG < 41bp 1 0.754900054509737 1 0.717478573322296 experiment 0.490199890980525 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232573446 chr2:232573441 nonsynonymous SNV 0.998 0 16 hm5C_associated_SNPs_45668 0 0 1 0 1 PTMA chr2:232573461 5'GT 232573461 Upstream 21bp
chr2 232573441 232573441 1 + A G UCEC 232573457 + 232573437 232573477 41 CACCAGCTCCGAAATCACCACCAAGGTGAGGCTGGACGCCG CACCGGCTCCGAAATCACCACCAAGGTGAGGCTGGACGCCG < 41bp 1 0.470034290756717 1 0.352903604507446 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232573457 chr2:232573441 nonsynonymous SNV 0.998 0 5 hm5C_associated_SNPs_45669 0 0 1 0 1 PTMA chr2:232573461 5'GT 232573461 Upstream 21bp
chr12 13232887 13232887 1 + C T UCEC 13232896 + 13232876 13232916 41 CCAAAATTGGCCGTGGGGAGCTGCGAAGATTTCTCTCTAGG CCAAAATTGGCTGTGGGGAGCTGCGAAGATTTCTCTCTAGG < 41bp 1 0.475130151022256 1 0.313832759857178 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234B ENSG00000084444 CDS Human protein_coding chr12:13232896 chr12:13232887 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_45671 0 0 1 0 1 FAM234B chr12:13232943 5'GT 13232943 Upstream 57bp
chr16 30953728 30953728 1 + T C UCEC 30953726 + 30953706 30953746 41 GCTGGTGCTCTCTGGCTGCTCCTGGCTCTCTGTCTCTGCCC GCTGGTGCTCTCTGGCTGCTCCCGGCTCTCTGTCTCTGCCC < 41bp 1 0.689953503322409 1 0.265969306230545 experiment 0.620092993355181 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30953726 chr16:30953728 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_45672 0 0 1 0 1 FBXL19 chr16:30953696 3'AG 30953696 Downstream 33bp
chr12 120876227 120876227 1 + T C UCEC 120876210 + 120876190 120876230 41 TGGAAGACTCTCACCTTCTTCGTCGCGCTCCCCGGGGTGGC TGGAAGACTCTCACCTTCTTCGTCGCGCTCCCCGGGGCGGC < 41bp 1 0.558811836309414 1 0.364409476518631 experiment 0.882376327381173 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control COX6A1 ENSG00000111775;ENSG00000111780 CDS Human other chr12:120876210 chr12:120876227 nonsynonymous SNV 0.986 4 38 hm5C_associated_SNPs_45674 0 0 1 0 2 COX6A1 chr12:120876182 3'AG 120876182 Downstream 46bp
chr12 120876227 120876227 1 + T C UCEC 120876210 + 120876190 120876230 41 TGGAAGACTCTCACCTTCTTCGTCGCGCTCCCCGGGGTGGC TGGAAGACTCTCACCTTCTTCGTCGCGCTCCCCGGGGCGGC < 41bp 1 0.558811836309414 1 0.364409476518631 experiment 0.882376327381173 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control COX6A1 ENSG00000111775;ENSG00000111780 CDS Human other chr12:120876210 chr12:120876227 nonsynonymous SNV 0.986 4 38 hm5C_associated_SNPs_45674 0 0 1 0 2 COX6A1 chr12:120876324 5'GT 120876324 Upstream 98bp
chr3 138329861 138329861 1 + C T UCEC 138329875 + 138329855 138329895 41 TATCTCCGGACTCTGCCACTCTGAGGTTAGTGCCCTGCCCA TATCTCTGGACTCTGCCACTCTGAGGTTAGTGCCCTGCCCA < 41bp 1 0.744139721869533 1 0.833303809165955 experiment 0.511720556260934 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAIM ENSG00000158234 CDS Human protein_coding chr3:138329875 chr3:138329861 nonsynonymous SNV 0.004 0 7 hm5C_associated_SNPs_45678 0 0 1 0 1 FAIM chr3:138329879 5'GT 138329879 Upstream 19bp
chr20 62374329 62374329 1 + C T UCEC 62374321 + 62374301 62374341 41 AGCCTGCCGCTGGAAGAAAGCCTGCCAGCGGTTCCTGGACT AGCCTGCCGCTGGAAGAAAGCCTGCCAGTGGTTCCTGGACT < 41bp 1 0.143935144692392 1 0.143517792224884 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62374321 chr20:62374329 nonsynonymous SNV 0.991 3 29 hm5C_associated_SNPs_45679 0 0 1 0 1 SLC2A4RG chr20:62374232 3'AG 62374232 Downstream 98bp
chr1 36505447 36505447 1 + G T UCEC 36505465 + 36505445 36505485 41 CAGAGACCCCGACAGGAGATCATCCAGGACTTGGCCTCCAT CATAGACCCCGACAGGAGATCATCCAGGACTTGGCCTCCAT < 41bp 1 0.136891112824864 1 0.1889289021492 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AGO3 ENSG00000126070 CDS Human protein_coding chr1:36505465 chr1:36505447 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_45680 0 0 1 0 1 AGO3 chr1:36505391 3'AG 36505391 Downstream 57bp
chr1 116942098 116942098 1 + G T UCEC 116942086 + 116942066 116942106 41 GAGCAGGCTGAGAGTGACATCATGAAGAGACAGCCCAGAAA GAGCAGGCTGAGAGTGACATCATGAAGAGACATCCCAGAAA < 41bp 1 0.67959969363048 1 0.379130750894547 experiment 0.640800612739039 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116942086 chr1:116942098 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_45681 0 0 1 0 2 ATP1A1 chr1:116942042 3'AG 116942042 Downstream 57bp
chr1 116942098 116942098 1 + G T UCEC 116942086 + 116942066 116942106 41 GAGCAGGCTGAGAGTGACATCATGAAGAGACAGCCCAGAAA GAGCAGGCTGAGAGTGACATCATGAAGAGACATCCCAGAAA < 41bp 1 0.67959969363048 1 0.379130750894547 experiment 0.640800612739039 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116942086 chr1:116942098 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_45681 0 0 1 0 2 ATP1A1 chr1:116942165 5'GT 116942165 Upstream 68bp
chr1 116942098 116942098 1 + G T UCEC 116942108 + 116942088 116942128 41 TGAAGAGACAGCCCAGAAATCCCAAAACAGACAAACTTGTG TGAAGAGACATCCCAGAAATCCCAAAACAGACAAACTTGTG < 41bp 1 0.412135866969688 1 0.222023785114288 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116942108 chr1:116942098 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_45682 0 0 1 0 2 ATP1A1 chr1:116942042 3'AG 116942042 Downstream 57bp
chr1 116942098 116942098 1 + G T UCEC 116942108 + 116942088 116942128 41 TGAAGAGACAGCCCAGAAATCCCAAAACAGACAAACTTGTG TGAAGAGACATCCCAGAAATCCCAAAACAGACAAACTTGTG < 41bp 1 0.412135866969688 1 0.222023785114288 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116942108 chr1:116942098 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_45682 0 0 1 0 2 ATP1A1 chr1:116942165 5'GT 116942165 Upstream 68bp
chr1 116942098 116942098 1 + G T UCEC 116942109 + 116942089 116942129 41 GAAGAGACAGCCCAGAAATCCCAAAACAGACAAACTTGTGA GAAGAGACATCCCAGAAATCCCAAAACAGACAAACTTGTGA < 41bp 1 0.188740101946709 1 0.367498457431793 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116942109 chr1:116942098 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_45683 0 0 1 0 2 ATP1A1 chr1:116942042 3'AG 116942042 Downstream 57bp
chr1 116942098 116942098 1 + G T UCEC 116942109 + 116942089 116942129 41 GAAGAGACAGCCCAGAAATCCCAAAACAGACAAACTTGTGA GAAGAGACATCCCAGAAATCCCAAAACAGACAAACTTGTGA < 41bp 1 0.188740101946709 1 0.367498457431793 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116942109 chr1:116942098 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_45683 0 0 1 0 2 ATP1A1 chr1:116942165 5'GT 116942165 Upstream 68bp
chr1 116942098 116942098 1 + G T UCEC 116942110 + 116942090 116942130 41 AAGAGACAGCCCAGAAATCCCAAAACAGACAAACTTGTGAA AAGAGACATCCCAGAAATCCCAAAACAGACAAACTTGTGAA < 41bp 1 0.537667435787013 1 0.506913900375366 experiment 0.924665128425973 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116942110 chr1:116942098 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_45684 0 0 1 0 2 ATP1A1 chr1:116942042 3'AG 116942042 Downstream 57bp
chr1 116942098 116942098 1 + G T UCEC 116942110 + 116942090 116942130 41 AAGAGACAGCCCAGAAATCCCAAAACAGACAAACTTGTGAA AAGAGACATCCCAGAAATCCCAAAACAGACAAACTTGTGAA < 41bp 1 0.537667435787013 1 0.506913900375366 experiment 0.924665128425973 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116942110 chr1:116942098 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_45684 0 0 1 0 2 ATP1A1 chr1:116942165 5'GT 116942165 Upstream 68bp
chr10 4877979 4877979 1 + C T UCEC 4877959 + 4877939 4877979 41 TTGCCTCTGGACGAGAGCAACATGGTTATTCCCAGTGACAC TTGCCTCTGGACGAGAGCAACATGGTTATTCCCAGTGACAT < 41bp 1 0.587809409642635 1 0.169598788022995 experiment 0.824381180714731 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4877959 chr10:4877979 nonsynonymous SNV 0.034 4 41 hm5C_associated_SNPs_45685 0 0 1 0 1 AKR1E2 chr10:4878001 5'GT 4878001 Upstream 23bp
chr14 58666957 58666957 1 + G T UCEC 58666954 + 58666934 58666974 41 CCATGCCGCTCTACGAGGGCCTGGGGAGCGGCGGGGAGAAG CCATGCCGCTCTACGAGGGCCTGTGGAGCGGCGGGGAGAAG < 41bp 1 0.64048828684956 1 0.147189855575562 experiment 0.719023426300879 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ACTR10 ENSG00000131966 CDS Human protein_coding chr14:58666954 chr14:58666957 nonsynonymous SNV 0.992 5 24 hm5C_associated_SNPs_45688 0 0 1 0 1 ACTR10 chr14:58667012 5'GT 58667012 Upstream 56bp
chr17 4701590 4701590 1 + T C UCEC 4701572 + 4701552 4701592 41 CAGCTTTCTTCTTTTATCCACAGCTCTCGCTTTGGCCATGG CAGCTTTCTTCTTTTATCCACAGCTCTCGCTTTGGCCACGG < 41bp 1 0.441782934340011 1 0.06980961561203 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMB6 ENSG00000142507 CDS Human protein_coding chr17:4701572 chr17:4701590 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_45689 0 0 1 0 2 PSMB6 chr17:4701555 3'AG 4701555 Downstream 36bp
chr17 4701590 4701590 1 + T C UCEC 4701572 + 4701552 4701592 41 CAGCTTTCTTCTTTTATCCACAGCTCTCGCTTTGGCCATGG CAGCTTTCTTCTTTTATCCACAGCTCTCGCTTTGGCCACGG < 41bp 1 0.441782934340011 1 0.06980961561203 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMB6 ENSG00000142507 CDS Human protein_coding chr17:4701572 chr17:4701590 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_45689 0 0 1 0 2 PSMB6 chr17:4701575 3'AG 4701575 Downstream 16bp
chr8 22064477 22064477 1 + G A UCEC 22064464 + 22064444 22064484 41 AAGGAGTGCACGTGGGCCATCTCCAGCACCCCCGGGCACCG AAGGAGTGCACGTGGGCCATCTCCAGCACCCCCAGGCACCG < 41bp 1 0.688152280988826 1 0.787684500217438 experiment 0.623695438022349 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22064464 chr8:22064477 nonsynonymous SNV 0.987 3 34 hm5C_associated_SNPs_45690 0 0 1 0 1 BMP1 chr8:22064494 5'GT 22064494 Upstream 18bp
chr11 830693 830693 1 + G A UCEC 830674 + 830654 830694 41 GAGCTGGAGCTGCAGAGCCGCGAGCAGGACCTGGAACGCGC GAGCTGGAGCTGCAGAGCCGCGAGCAGGACCTGGAACGCAC < 41bp 1 0.552380051062905 1 0.463044255971909 experiment 0.895239897874191 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:830674 chr11:830693 nonsynonymous SNV 0.844 0 40 hm5C_associated_SNPs_45691 0 0 1 0 2 CRACR2B chr11:830621 3'AG 830621 Downstream 73bp
chr11 830693 830693 1 + G A UCEC 830674 + 830654 830694 41 GAGCTGGAGCTGCAGAGCCGCGAGCAGGACCTGGAACGCGC GAGCTGGAGCTGCAGAGCCGCGAGCAGGACCTGGAACGCAC < 41bp 1 0.552380051062905 1 0.463044255971909 experiment 0.895239897874191 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:830674 chr11:830693 nonsynonymous SNV 0.844 0 40 hm5C_associated_SNPs_45691 0 0 1 0 2 CRACR2B chr11:830713 5'GT 830713 Upstream 21bp
chr17 18140846 18140846 1 + G A UCEC 18140861 + 18140841 18140881 41 GCGTGGCCATCATAGACCTCCTCCAGGACCGCGAGGGCTTC GCGTGACCATCATAGACCTCCTCCAGGACCGCGAGGGCTTC < 41bp 1 0.649378329964905 1 0.87172657251358 experiment 0.70124334007019 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18140861 chr17:18140846 nonsynonymous SNV 0.814 0 6 hm5C_associated_SNPs_45692 0 0 0 0 1 LLGL1 chr17:18140795 3'AG 18140795 Downstream 52bp
chr17 18140846 18140846 1 + G A UCEC 18140864 + 18140844 18140884 41 TGGCCATCATAGACCTCCTCCAGGACCGCGAGGGCTTCACA TGACCATCATAGACCTCCTCCAGGACCGCGAGGGCTTCACA < 41bp 1 0.602542934471163 1 0.772955179214478 experiment 0.794914131057673 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18140864 chr17:18140846 nonsynonymous SNV 0.814 0 3 hm5C_associated_SNPs_45693 0 0 0 0 1 LLGL1 chr17:18140795 3'AG 18140795 Downstream 52bp
chr22 44379853 44379853 1 + A C UCEC 44379837 + 44379817 44379857 41 TACCTTGGGGGACCCACAAGCATCCGCGGATTCAGCATGCA TACCTTGGGGGACCCACAAGCATCCGCGGATTCAGCCTGCA < 41bp 1 0.267894478140338 1 0.407356292009354 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44379837 chr22:44379853 nonsynonymous SNV 0.998 1 37 hm5C_associated_SNPs_45694 0 0 1 0 2 SAMM50 chr22:44379813 3'AG 44379813 Downstream 41bp
chr22 44379853 44379853 1 + A C UCEC 44379837 + 44379817 44379857 41 TACCTTGGGGGACCCACAAGCATCCGCGGATTCAGCATGCA TACCTTGGGGGACCCACAAGCATCCGCGGATTCAGCCTGCA < 41bp 1 0.267894478140338 1 0.407356292009354 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44379837 chr22:44379853 nonsynonymous SNV 0.998 1 37 hm5C_associated_SNPs_45694 0 0 1 0 2 SAMM50 chr22:44379880 5'GT 44379880 Upstream 28bp
chr19 35530589 35530589 1 + T A UCEC 35530583 + 35530563 35530603 41 TGAAAGCAAAGAGAACTGCACGGGCGTCCAGGTGGCCGAAT TGAAAGCAAAGAGAACTGCACGGGCGACCAGGTGGCCGAAT < 41bp 1 0.602518263347123 1 0.781973719596863 experiment 0.794963473305754 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCN1B ENSG00000105711 CDS Human protein_coding chr19:35530583 chr19:35530589 nonsynonymous SNV 0.990 4 27 hm5C_associated_SNPs_45696 0 0 0 0 2 SCN1B chr19:35530539 3'AG 35530539 Downstream 51bp
chr19 35530589 35530589 1 + T A UCEC 35530583 + 35530563 35530603 41 TGAAAGCAAAGAGAACTGCACGGGCGTCCAGGTGGCCGAAT TGAAAGCAAAGAGAACTGCACGGGCGACCAGGTGGCCGAAT < 41bp 1 0.602518263347123 1 0.781973719596863 experiment 0.794963473305754 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCN1B ENSG00000105711 CDS Human protein_coding chr19:35530583 chr19:35530589 nonsynonymous SNV 0.990 4 27 hm5C_associated_SNPs_45696 0 0 0 0 2 SCN1B chr19:35530610 5'GT 35530610 Upstream 22bp
chr17 35346648 35346648 1 + C T UCEC 35346663 + 35346643 35346683 41 TCTATCGAGTTCTTGGCAAACCTGAGCCAGCAGCTCAGCCT TCTATTGAGTTCTTGGCAAACCTGAGCCAGCAGCTCAGCCT < 41bp 1 0.640210135356261 1 0.034627377986908 experiment 0.719579729287477 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AATF ENSG00000108270 CDS Human other chr17:35346663 chr17:35346648 stopgain 0.995 1 6 hm5C_associated_SNPs_45698 0 0 1 0 1 AATF chr17:35346710 5'GT 35346710 Upstream 63bp
chr5 145641104 145641104 1 + T C UCEC 145641091 + 145641071 145641111 41 AGGTTGCTTTTAAGGGTGACCCAGAAGCAGCCCTAATCCAA AGGTTGCTTTTAAGGGTGACCCAGAAGCAGCCCCAATCCAA < 41bp 1 0.422985446930834 1 0.367034047842026 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM27 ENSG00000091009 CDS Human protein_coding chr5:145641091 chr5:145641104 nonsynonymous SNV 0.957 4 34 hm5C_associated_SNPs_45700 0 0 1 0 1 RBM27 chr5:145641073 3'AG 145641073 Downstream 32bp
chr19 4954437 4954437 1 + C G UCEC 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GGAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG < 41bp 1 0.27619192049875 1 0.548057556152344 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954437 . 0.000 0 2 hm5C_associated_SNPs_45701 0 0 0 0 2 UHRF1 chr19:4954362 3'AG 4954362 Downstream 76bp
chr19 4954437 4954437 1 + C G UCEC 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GGAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG < 41bp 1 0.27619192049875 1 0.548057556152344 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954437 . 0.000 0 2 hm5C_associated_SNPs_45701 0 0 0 0 2 UHRF1 chr19:4954500 5'GT 4954500 Upstream 64bp
chr2 242695343 242695343 1 + C A UCEC 242695362 + 242695342 242695382 41 CCTGTGGAGCGGCTCTACGACATCGTGACTGACCTGCGCGC CATGTGGAGCGGCTCTACGACATCGTGACTGACCTGCGCGC < 41bp 1 0.503982948813679 1 0.282419264316559 experiment 0.992034102372641 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242695362 chr2:242695343 nonsynonymous SNV 0.198 5 2 hm5C_associated_SNPs_45703 0 0 1 0 1 D2HGDH chr2:242695264 3'AG 242695264 Downstream 80bp
chr19 50334620 50334620 1 + G A UCEC 50334624 + 50334604 50334644 41 CCCAGGAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAG CCCAGGAGGGGTGAGCAGCCCTTCCCCAGCCCAGCTGGGAG < 41bp 1 0.27026907113986 1 0.284995049238205 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334624 chr19:50334620 nonsynonymous SNV 0.648 0 17 hm5C_associated_SNPs_45704 0 0 1 0 2 MED25 chr19:50334590 3'AG 50334590 Downstream 31bp
chr19 50334620 50334620 1 + G A UCEC 50334624 + 50334604 50334644 41 CCCAGGAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAG CCCAGGAGGGGTGAGCAGCCCTTCCCCAGCCCAGCTGGGAG < 41bp 1 0.27026907113986 1 0.284995049238205 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334624 chr19:50334620 nonsynonymous SNV 0.648 0 17 hm5C_associated_SNPs_45704 0 0 1 0 2 MED25 chr19:50334718 5'GT 50334718 Upstream 99bp
chr19 50334620 50334620 1 + G A UCEC 50334629 + 50334609 50334649 41 GAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAGCCCCA GAGGGGTGAGCAGCCCTTCCCCAGCCCAGCTGGGAGCCCCA < 41bp 1 0.388648819199424 1 0.342860013246536 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334629 chr19:50334620 nonsynonymous SNV 0.648 0 12 hm5C_associated_SNPs_45705 0 0 1 0 2 MED25 chr19:50334590 3'AG 50334590 Downstream 31bp
chr19 50334620 50334620 1 + G A UCEC 50334629 + 50334609 50334649 41 GAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAGCCCCA GAGGGGTGAGCAGCCCTTCCCCAGCCCAGCTGGGAGCCCCA < 41bp 1 0.388648819199424 1 0.342860013246536 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334629 chr19:50334620 nonsynonymous SNV 0.648 0 12 hm5C_associated_SNPs_45705 0 0 1 0 2 MED25 chr19:50334718 5'GT 50334718 Upstream 99bp
chr8 145139715 145139715 1 + C T UCEC 145139712 + 145139692 145139732 41 TACTTGCTCCCCGGCCTCTCCCGCTTCGTCTCCATCGGCCT TACTTGCTCCCCGGCCTCTCCCGTTTCGTCTCCATCGGCCT < 41bp 1 0.133915477605935 1 0.0579718053340912 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139712 chr8:145139715 synonymous SNV . 0 24 hm5C_associated_SNPs_45706 0 0 1 0 1 GPAA1 chr8:145139625 3'AG 145139625 Downstream 91bp
chr5 74638494 74638494 1 + G C UCEC 74638509 + 74638489 74638529 41 TCATAGTGGGGACAGTGACACTGACCATCTGCATGATGTCC TCATACTGGGGACAGTGACACTGACCATCTGCATGATGTCC < 41bp 1 0.318296676653989 1 0.0974304974079132 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMGCR ENSG00000113161 CDS Human protein_coding chr5:74638509 chr5:74638494 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_45707 0 0 1 0 1 HMGCR chr5:74638408 3'AG 74638408 Downstream 87bp
chr7 79842162 79842162 1 + C T UCEC 79842156 + 79842136 79842176 41 AGAAAAAATCAAAAAGAGCCCTCTCACTATATGCTATCCAG AGAAAAAATCAAAAAGAGCCCTCTCATTATATGCTATCCAG < 41bp 1 0.166634699830067 1 0.051021933555603 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79842156 chr7:79842162 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_45708 0 0 1 0 1 GNAI1 chr7:79842185 5'GT 79842185 Upstream 24bp
chr11 4142938 4142938 1 + T C UCEC 4142924 + 4142904 4142944 41 AGAACACAGGAAAGGAAGAGCAGCGTGCCAGAGATCTTTTC AGAACACAGGAAAGGAAGAGCAGCGTGCCAGAGACCTTTTC < 41bp 1 0.614329425904609 1 0.519353806972504 experiment 0.771341148190782 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RRM1 ENSG00000167325 CDS Human protein_coding chr11:4142924 chr11:4142938 synonymous SNV . 0 35 hm5C_associated_SNPs_45711 0 0 1 0 1 RRM1 chr11:4142995 5'GT 4142995 Upstream 58bp
chr17 37359332 37359332 1 + A G UCEC 37359313 + 37359293 37359333 41 TGAGGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATAC TGAGGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATGC < 41bp 1 0.789464370226712 1 0.0841883420944214 experiment 0.421071259546576 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359313 chr17:37359332 nonsynonymous SNV 0.342 4 40 hm5C_associated_SNPs_45713 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 91bp
chr17 37359332 37359332 1 + A G UCEC 37359313 + 37359293 37359333 41 TGAGGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATAC TGAGGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATGC < 41bp 1 0.789464370226712 1 0.0841883420944214 experiment 0.421071259546576 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359313 chr17:37359332 nonsynonymous SNV 0.342 4 40 hm5C_associated_SNPs_45713 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 31bp
chr17 37359332 37359332 1 + A G UCEC 37359316 + 37359296 37359336 41 GGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGT GGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATGCCGT < 41bp 1 0.400289641978328 1 0.273587286472321 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359316 chr17:37359332 nonsynonymous SNV 0.342 4 37 hm5C_associated_SNPs_45714 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 91bp
chr17 37359332 37359332 1 + A G UCEC 37359316 + 37359296 37359336 41 GGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGT GGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATGCCGT < 41bp 1 0.400289641978328 1 0.273587286472321 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359316 chr17:37359332 nonsynonymous SNV 0.342 4 37 hm5C_associated_SNPs_45714 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 31bp
chr17 37359332 37359332 1 + A G UCEC 37359319 + 37359299 37359339 41 GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAA GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATGCCGTGAA < 41bp 1 0.427020526598238 1 0.115762263536453 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359319 chr17:37359332 nonsynonymous SNV 0.342 4 34 hm5C_associated_SNPs_45715 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 91bp
chr17 37359332 37359332 1 + A G UCEC 37359319 + 37359299 37359339 41 GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAA GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATGCCGTGAA < 41bp 1 0.427020526598238 1 0.115762263536453 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359319 chr17:37359332 nonsynonymous SNV 0.342 4 34 hm5C_associated_SNPs_45715 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 31bp
chr17 37359332 37359332 1 + A G UCEC 37359322 + 37359302 37359342 41 TGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCT TGAGGATTTTGCGCCGGCTGCTCAGAAGATGCCGTGAATCT < 41bp 1 0.468340696743297 1 0.136485755443573 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359322 chr17:37359332 nonsynonymous SNV 0.342 4 31 hm5C_associated_SNPs_45716 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 91bp
chr17 37359332 37359332 1 + A G UCEC 37359322 + 37359302 37359342 41 TGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCT TGAGGATTTTGCGCCGGCTGCTCAGAAGATGCCGTGAATCT < 41bp 1 0.468340696743297 1 0.136485755443573 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359322 chr17:37359332 nonsynonymous SNV 0.342 4 31 hm5C_associated_SNPs_45716 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 31bp
chr17 37359332 37359332 1 + A G UCEC 37359333 + 37359313 37359353 41 CGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGA CGCCGGCTGCTCAGAAGATGCCGTGAATCTAAGAAGATCGA < 41bp 1 0.194057189696321 1 0.140712738037109 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359333 chr17:37359332 nonsynonymous SNV 0.342 4 20 hm5C_associated_SNPs_45717 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 91bp
chr17 37359332 37359332 1 + A G UCEC 37359333 + 37359313 37359353 41 CGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGA CGCCGGCTGCTCAGAAGATGCCGTGAATCTAAGAAGATCGA < 41bp 1 0.194057189696321 1 0.140712738037109 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359333 chr17:37359332 nonsynonymous SNV 0.342 4 20 hm5C_associated_SNPs_45717 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 31bp
chr17 37359332 37359332 1 + A G UCEC 37359334 + 37359314 37359354 41 GCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGAT GCCGGCTGCTCAGAAGATGCCGTGAATCTAAGAAGATCGAT < 41bp 1 0.709794646099518 1 0.202814668416977 experiment 0.580410707800963 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359334 chr17:37359332 nonsynonymous SNV 0.342 4 19 hm5C_associated_SNPs_45718 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 91bp
chr17 37359332 37359332 1 + A G UCEC 37359334 + 37359314 37359354 41 GCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGAT GCCGGCTGCTCAGAAGATGCCGTGAATCTAAGAAGATCGAT < 41bp 1 0.709794646099518 1 0.202814668416977 experiment 0.580410707800963 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359334 chr17:37359332 nonsynonymous SNV 0.342 4 19 hm5C_associated_SNPs_45718 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 31bp
chr12 104056696 104056696 1 + C T UCEC 104056683 + 104056663 104056703 41 GAGATCACTGCCAAAAATGGCCGAATTTACACACTGACAGG GAGATCACTGCCAAAAATGGCCGAATTTACACATTGACAGG < 41bp 1 0.182027758109263 1 0.13932928442955 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient STAB2 ENSG00000136011 CDS Human protein_coding chr12:104056683 chr12:104056696 synonymous SNV . 0 34 hm5C_associated_SNPs_45719 0 0 0 0 2 STAB2 chr12:104056624 3'AG 104056624 Downstream 73bp
chr12 104056696 104056696 1 + C T UCEC 104056683 + 104056663 104056703 41 GAGATCACTGCCAAAAATGGCCGAATTTACACACTGACAGG GAGATCACTGCCAAAAATGGCCGAATTTACACATTGACAGG < 41bp 1 0.182027758109263 1 0.13932928442955 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient STAB2 ENSG00000136011 CDS Human protein_coding chr12:104056683 chr12:104056696 synonymous SNV . 0 34 hm5C_associated_SNPs_45719 0 0 0 0 2 STAB2 chr12:104056776 5'GT 104056776 Upstream 81bp
chr9 116053083 116053083 1 + A G UCEC 116053079 + 116053059 116053099 41 ATCTATGGAATAAATTTCTCCCCCAATGGGTAAAATAAACA ATCTATGGAATAAATTTCTCCCCCGATGGGTAAAATAAACA < 41bp 1 0.0935292575196257 1 0.133106708526611 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116053079 chr9:116053083 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_45720 0 0 0 0 1 PRPF4 chr9:116053087 5'GT 116053087 Upstream 5bp
chr1 173819555 173819555 1 + A G UCEC 173819569 + 173819549 173819589 41 TTAATCAGACTAATGGAGACCCAAGAGGAAGATGTGGTCCT TTAATCGGACTAATGGAGACCCAAGAGGAAGATGTGGTCCT < 41bp 1 0.160073340237861 1 0.364049077033997 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DARS2 ENSG00000117593 CDS Human protein_coding chr1:173819569 chr1:173819555 nonsynonymous SNV 0.311 1 7 hm5C_associated_SNPs_45721 0 0 1 0 2 DARS2 chr1:173819465 3'AG 173819465 Downstream 91bp
chr1 173819555 173819555 1 + A G UCEC 173819569 + 173819549 173819589 41 TTAATCAGACTAATGGAGACCCAAGAGGAAGATGTGGTCCT TTAATCGGACTAATGGAGACCCAAGAGGAAGATGTGGTCCT < 41bp 1 0.160073340237861 1 0.364049077033997 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DARS2 ENSG00000117593 CDS Human protein_coding chr1:173819569 chr1:173819555 nonsynonymous SNV 0.311 1 7 hm5C_associated_SNPs_45721 0 0 1 0 2 DARS2 chr1:173819617 5'GT 173819617 Upstream 63bp
chr7 155534728 155534728 1 + A G UCEC 155534723 + 155534703 155534743 41 TGGCGGGTTCCAGAAGCTCACAGGGAAAGACGGAAGTGAAA TGGCGGGTTCCAGAAGCTCACAGGGGAAGACGGAAGTGAAA < 41bp 1 0.769304571016278 1 0.451935350894928 experiment 0.461390857967443 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM33 ENSG00000184863 CDS Human protein_coding chr7:155534723 chr7:155534728 synonymous SNV . 0 26 hm5C_associated_SNPs_45722 0 0 1 0 1 RBM33 chr7:155534800 5'GT 155534800 Upstream 73bp
chr4 170641138 170641138 1 + T C UCEC 170641153 + 170641133 170641173 41 AATAATGTTCAACTGAATCTCACAGATGAGGAGAGAGAAGA AATAACGTTCAACTGAATCTCACAGATGAGGAGAGAGAAGA < 41bp 1 0.722743483617867 1 0.483511835336685 experiment 0.554513032764266 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CLCN3 ENSG00000109572 CDS Human protein_coding chr4:170641153 chr4:170641138 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_45723 0 0 1 0 1 CLCN3 chr4:170641058 3'AG 170641058 Downstream 81bp
chr16 72132848 72132848 1 + G A UCEC 72132846 + 72132826 72132866 41 GTCTGTGAGGGGCAAGTACTCGGATGACACGCCTCTGCCAA GTCTGTGAGGGGCAAGTACTCGAATGACACGCCTCTGCCAA < 41bp 1 0.780302701844017 1 0.903051018714905 experiment 0.439394596311966 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72132846 chr16:72132848 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_45724 0 0 1 0 2 DHX38 chr16:72132826 3'AG 72132826 Downstream 23bp
chr16 72132848 72132848 1 + G A UCEC 72132846 + 72132826 72132866 41 GTCTGTGAGGGGCAAGTACTCGGATGACACGCCTCTGCCAA GTCTGTGAGGGGCAAGTACTCGAATGACACGCCTCTGCCAA < 41bp 1 0.780302701844017 1 0.903051018714905 experiment 0.439394596311966 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72132846 chr16:72132848 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_45724 0 0 1 0 2 DHX38 chr16:72132944 5'GT 72132944 Upstream 97bp
chr1 78325049 78325049 1 + A G UCEC 78325041 + 78325021 78325061 41 GGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA GGAGACAGTGATTTTCTTGCCAAACTTCGCTGTATTCGACA < 41bp 1 0.214024338931444 1 0.231562435626984 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78325041 chr1:78325049 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_45725 0 0 0 0 2 MIGA1 chr1:78324999 3'AG 78324999 Downstream 51bp
chr1 78325049 78325049 1 + A G UCEC 78325041 + 78325021 78325061 41 GGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA GGAGACAGTGATTTTCTTGCCAAACTTCGCTGTATTCGACA < 41bp 1 0.214024338931444 1 0.231562435626984 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78325041 chr1:78325049 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_45725 0 0 0 0 2 MIGA1 chr1:78325071 5'GT 78325071 Upstream 23bp
chrX 69639626 69639626 1 + A T UCEC 69639607 + 69639587 69639627 41 CAGGATTGAGCTTCTTTAATCCCGTCTGTGCCACCCCCAAT CAGGATTGAGCTTCTTTAATCCCGTCTGTGCCACCCCCATT < 41bp 1 0.408890844634454 1 0.101356476545334 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639607 chrX:69639626 nonsynonymous SNV 0.989 1 40 hm5C_associated_SNPs_45726 0 0 0 0 1 KIF4A chrX:69639633 5'GT 69639633 Upstream 8bp
chr13 111147746 111147746 1 + C A UCEC 111147745 + 111147725 111147765 41 CTCCTGGGGAAAGAGGTGACCCAGGAGAGGCCAACACCCTT CTCCTGGGGAAAGAGGTGACCAAGGAGAGGCCAACACCCTT < 41bp 1 0.431314032108117 1 0.764168441295624 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111147745 chr13:111147746 nonsynonymous SNV 0.032 4 22 hm5C_associated_SNPs_45727 0 0 1 0 2 COL4A2 chr13:111147689 3'AG 111147689 Downstream 58bp
chr13 111147746 111147746 1 + C A UCEC 111147745 + 111147725 111147765 41 CTCCTGGGGAAAGAGGTGACCCAGGAGAGGCCAACACCCTT CTCCTGGGGAAAGAGGTGACCAAGGAGAGGCCAACACCCTT < 41bp 1 0.431314032108117 1 0.764168441295624 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111147745 chr13:111147746 nonsynonymous SNV 0.032 4 22 hm5C_associated_SNPs_45727 0 0 1 0 2 COL4A2 chr13:111147814 5'GT 111147814 Upstream 69bp
chr6 145157505 145157505 1 + C T UCEC 145157491 + 145157471 145157511 41 CAGCACCTCCGAAGGGGGCTCCCTGTCGGTTCACCGCCAGA CAGCACCTCCGAAGGGGGCTCCCTGTCGGTTCACTGCCAGA < 41bp 1 0.0567389051584474 1 0.291519343852997 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:145157491 chr6:145157505 nonsynonymous SNV 0.009 3 35 hm5C_associated_SNPs_45728 0 0 0 0 1 UTRN chr6:145157437 3'AG 145157437 Downstream 69bp
chr3 49713563 49713563 1 + G T UCEC 49713571 + 49713551 49713591 41 AAGCGCCCCAAGGCCGAGTCCTTCTTTCAGACCAAAGCCTT AAGCGCCCCAAGTCCGAGTCCTTCTTTCAGACCAAAGCCTT < 41bp 1 0.166510853730267 1 0.0686521530151367 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49713571 chr3:49713563 nonsynonymous SNV 0.967 0 13 hm5C_associated_SNPs_45729 0 0 1 0 2 APEH chr3:49713489 3'AG 49713489 Downstream 75bp
chr3 49713563 49713563 1 + G T UCEC 49713571 + 49713551 49713591 41 AAGCGCCCCAAGGCCGAGTCCTTCTTTCAGACCAAAGCCTT AAGCGCCCCAAGTCCGAGTCCTTCTTTCAGACCAAAGCCTT < 41bp 1 0.166510853730267 1 0.0686521530151367 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49713571 chr3:49713563 nonsynonymous SNV 0.967 0 13 hm5C_associated_SNPs_45729 0 0 1 0 2 APEH chr3:49713652 5'GT 49713652 Upstream 90bp
chr16 66998549 66998549 1 + G A UCEC 66998564 + 66998544 66998584 41 GCAGGGCTGTTCCACAGAGCCATCACACAGAGTGGGGTCAT GCAGGACTGTTCCACAGAGCCATCACACAGAGTGGGGTCAT < 41bp 1 0.447910349626997 1 0.123782753944397 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:66998564 chr16:66998549 synonymous SNV . 0 6 hm5C_associated_SNPs_45730 0 0 1 0 2 CES3 chr16:66998526 3'AG 66998526 Downstream 24bp
chr16 66998549 66998549 1 + G A UCEC 66998564 + 66998544 66998584 41 GCAGGGCTGTTCCACAGAGCCATCACACAGAGTGGGGTCAT GCAGGACTGTTCCACAGAGCCATCACACAGAGTGGGGTCAT < 41bp 1 0.447910349626997 1 0.123782753944397 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:66998564 chr16:66998549 synonymous SNV . 0 6 hm5C_associated_SNPs_45730 0 0 1 0 2 CES3 chr16:66998630 5'GT 66998630 Upstream 82bp
chr19 42392282 42392282 1 + G A UCEC 42392281 + 42392261 42392301 41 AGGCCTCCCCAGGCCCCTCCCGGCCTGGCCTGGTTCCCGTC AGGCCTCCCCAGGCCCCTCCCAGCCTGGCCTGGTTCCCGTC < 41bp 1 0.263116729476718 1 0.741267561912537 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42392281 chr19:42392282 nonsynonymous SNV 0.247 2 22 hm5C_associated_SNPs_45731 0 0 1 0 2 ARHGEF1 chr19:42392263 3'AG 42392263 Downstream 20bp
chr19 42392282 42392282 1 + G A UCEC 42392281 + 42392261 42392301 41 AGGCCTCCCCAGGCCCCTCCCGGCCTGGCCTGGTTCCCGTC AGGCCTCCCCAGGCCCCTCCCAGCCTGGCCTGGTTCCCGTC < 41bp 1 0.263116729476718 1 0.741267561912537 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42392281 chr19:42392282 nonsynonymous SNV 0.247 2 22 hm5C_associated_SNPs_45731 0 0 1 0 2 ARHGEF1 chr19:42392349 5'GT 42392349 Upstream 68bp
chr2 15732063 15732063 1 + G A UCEC 15732066 + 15732046 15732086 41 GACGGGGTGAAGATGGCGGCCTTCTCCGGTGCGTTTGTGGA GACGGGGTGAAGATGGCAGCCTTCTCCGGTGCGTTTGTGGA < 41bp 1 0.391968881158225 1 0.154820501804352 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX1 ENSG00000079785 CDS Human protein_coding chr2:15732066 chr2:15732063 synonymous SNV . 0 18 hm5C_associated_SNPs_45732 0 0 1 0 1 DDX1 chr2:15732073 5'GT 15732073 Upstream 11bp
chrX 64956742 64956742 1 + G A UCEC 64956736 + 64956716 64956756 41 TTGAACGGGAGAAGGAGGAGCTGATGGAGAGGCTGAAGCAG TTGAACGGGAGAAGGAGGAGCTGATGAAGAGGCTGAAGCAG < 41bp 1 0.368301991845203 1 0.403478443622589 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956736 chrX:64956742 nonsynonymous SNV 0.996 1 27 hm5C_associated_SNPs_45734 0 0 1 0 2 MSN chrX:64956657 3'AG 64956657 Downstream 86bp
chrX 64956742 64956742 1 + G A UCEC 64956736 + 64956716 64956756 41 TTGAACGGGAGAAGGAGGAGCTGATGGAGAGGCTGAAGCAG TTGAACGGGAGAAGGAGGAGCTGATGAAGAGGCTGAAGCAG < 41bp 1 0.368301991845203 1 0.403478443622589 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956736 chrX:64956742 nonsynonymous SNV 0.996 1 27 hm5C_associated_SNPs_45734 0 0 1 0 2 MSN chrX:64956787 5'GT 64956787 Upstream 46bp
chr1 206574977 206574977 1 + T G UCEC 206574965 + 206574945 206574985 41 TACAACAACGTCTTCTGCCCCCCTATGAAGTTTGAGTTTCA TACAACAACGTCTTCTGCCCCCCTATGAAGTTGGAGTTTCA < 41bp 1 0.181451155862946 1 0.137318283319473 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SRGAP2 ENSG00000163486 CDS Human other chr1:206574965 chr1:206574977 nonsynonymous SNV 0.999 3 33 hm5C_associated_SNPs_45735 0 0 0 0 1 SRGAP2 chr1:206575004 5'GT 206575004 Upstream 28bp
chr1 231401782 231401782 1 + G T UCEC 231401783 + 231401763 231401803 41 TTCTGAATATTGTGATGGAGCCATTTTTTAAAAGAGAAGTT TTCTGAATATTGTGATGGATCCATTTTTTAAAAGAGAAGTT < 41bp 1 0.103824968514553 1 0.050985187292099 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231401783 chr1:231401782 nonsynonymous SNV 0.999 2 20 hm5C_associated_SNPs_45736 0 0 1 0 1 GNPAT chr1:231401760 3'AG 231401760 Downstream 23bp
chr17 37816514 37816514 1 + G A UCEC 37816499 + 37816479 37816519 41 GTGTACACCATTGAAGTTCCCTTTCACGGCAAGACGTTTAT GTGTACACCATTGAAGTTCCCTTTCACGGCAAGACATTTAT < 41bp 1 0.0467741709037189 1 0.0245318710803986 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control STARD3 ENSG00000131748 CDS Human protein_coding chr17:37816499 chr17:37816514 nonsynonymous SNV . 0 36 hm5C_associated_SNPs_45737 0 0 1 1 2 STARD3 chr17:37816464 3'AG 37816464 Downstream 51bp
chr17 37816514 37816514 1 + G A UCEC 37816499 + 37816479 37816519 41 GTGTACACCATTGAAGTTCCCTTTCACGGCAAGACGTTTAT GTGTACACCATTGAAGTTCCCTTTCACGGCAAGACATTTAT < 41bp 1 0.0467741709037189 1 0.0245318710803986 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control STARD3 ENSG00000131748 CDS Human protein_coding chr17:37816499 chr17:37816514 nonsynonymous SNV . 0 36 hm5C_associated_SNPs_45737 0 0 1 1 2 STARD3 chr17:37816526 5'GT 37816526 Upstream 13bp
chr1 37947357 37947357 1 + C T UCEC 37947350 + 37947330 37947370 41 GGGATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGG GGGATCGTGGTTTCCAACGACACATACTGTGACCTCCAAGG < 41bp 1 0.252143761187648 1 0.417165160179138 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947350 chr1:37947357 nonsynonymous SNV 0.833 4 28 hm5C_associated_SNPs_45738 0 0 0 0 1 ZC3H12A chr1:37947436 5'GT 37947436 Upstream 80bp
chr1 37947357 37947357 1 + C T UCEC 37947352 + 37947332 37947372 41 GATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGGCG GATCGTGGTTTCCAACGACACATACTGTGACCTCCAAGGCG < 41bp 1 0.181721174545594 1 0.113150864839554 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947352 chr1:37947357 nonsynonymous SNV 0.833 4 26 hm5C_associated_SNPs_45739 0 0 0 0 1 ZC3H12A chr1:37947436 5'GT 37947436 Upstream 80bp
chr16 626234 626234 1 + G A UCEC 626254 + 626234 626274 41 GCCCTCGTTCCTGTGGCTGACGTGAGTGGACTGGGGTGGAG ACCCTCGTTCCTGTGGCTGACGTGAGTGGACTGGGGTGGAG < 41bp 1 0.793920940850674 1 0.44940248131752 experiment 0.412158118298652 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PIGQ ENSG00000007541 CDS Human protein_coding chr16:626254 chr16:626234 nonsynonymous SNV 0.026 1 1 hm5C_associated_SNPs_45740 0 0 1 1 1 PIGQ chr16:626254 5'GT 626254 Upstream 21bp
chr16 21190820 21190820 1 + T C UCEC 21190826 + 21190806 21190846 41 CAGCAAAACACCAGTTGTGACTTTCTGCCAGCCATGAAGTC CAGCAAAACACCAGCTGTGACTTTCTGCCAGCCATGAAGTC < 41bp 1 0.0616158032687862 1 0.0434902310371399 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TMEM159 ENSG00000011638 CDS Human protein_coding chr16:21190826 chr16:21190820 synonymous SNV . 0 15 hm5C_associated_SNPs_45742 0 0 1 1 1 TMEM159 chr16:21190796 3'AG 21190796 Downstream 25bp
chr8 9620700 9620700 1 + G A UCEC 9620699 + 9620679 9620719 41 TCACTGTGTTAATCAGGGAACGATTTTGCTGGATCTTGCTC TCACTGTGTTAATCAGGGAACAATTTTGCTGGATCTTGCTC < 41bp 1 0.0729942470149578 1 0.0845592617988586 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TNKS ENSG00000173273 CDS Human protein_coding chr8:9620699 chr8:9620700 synonymous SNV . 0 22 hm5C_associated_SNPs_45743 0 0 1 0 2 TNKS chr8:9620657 3'AG 9620657 Downstream 44bp
chr8 9620700 9620700 1 + G A UCEC 9620699 + 9620679 9620719 41 TCACTGTGTTAATCAGGGAACGATTTTGCTGGATCTTGCTC TCACTGTGTTAATCAGGGAACAATTTTGCTGGATCTTGCTC < 41bp 1 0.0729942470149578 1 0.0845592617988586 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TNKS ENSG00000173273 CDS Human protein_coding chr8:9620699 chr8:9620700 synonymous SNV . 0 22 hm5C_associated_SNPs_45743 0 0 1 0 2 TNKS chr8:9620754 5'GT 9620754 Upstream 55bp
chr3 58112452 58112452 1 + C T UCEC 58112439 + 58112419 58112459 41 TGCTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTA TGCTGAGTACATTCCTTTCGCACCGGGGGATTATGATGTTA < 41bp 1 0.451523379936074 1 0.157622963190079 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112439 chr3:58112452 synonymous SNV . 0 34 hm5C_associated_SNPs_45744 1 0 1 0 1 FLNB chr3:58112489 5'GT 58112489 Upstream 38bp
chr3 58112452 58112452 1 + C T UCEC 58112441 + 58112421 58112461 41 CTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAAT CTGAGTACATTCCTTTCGCACCGGGGGATTATGATGTTAAT < 41bp 1 0.212244887369182 1 0.323051989078522 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112441 chr3:58112452 synonymous SNV . 0 32 hm5C_associated_SNPs_45745 1 0 1 0 1 FLNB chr3:58112489 5'GT 58112489 Upstream 38bp
chr3 58112452 58112452 1 + C T UCEC 58112442 + 58112422 58112462 41 TGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAATA TGAGTACATTCCTTTCGCACCGGGGGATTATGATGTTAATA < 41bp 1 0.392310027345162 1 0.903830349445343 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112442 chr3:58112452 synonymous SNV . 0 31 hm5C_associated_SNPs_45746 1 0 1 0 1 FLNB chr3:58112489 5'GT 58112489 Upstream 38bp
chr21 42769566 42769566 1 + C T UCEC 42769560 + 42769540 42769580 41 AGTTCTCCTGGAGGAGGGGTCAGCCACGGTTCCCCGACTGG AGTTCTCCTGGAGGAGGGGTCAGCCATGGTTCCCCGACTGG < 41bp 1 0.351157013331653 1 0.241688787937164 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MX2 ENSG00000183486 CDS Human protein_coding chr21:42769560 chr21:42769566 nonsynonymous SNV 0.885 4 27 hm5C_associated_SNPs_45747 0 0 0 0 1 MX2 chr21:42769618 5'GT 42769618 Upstream 53bp
chr15 100215624 100215624 1 + G A UCEC 100215637 + 100215617 100215657 41 CACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGTC CACTACAAACCTCACAGTGCCAAATGGAGCTGGAAGCAGTC < 41bp 1 0.271071961224188 1 0.457383155822754 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEF2A ENSG00000068305 CDS Human protein_coding chr15:100215637 chr15:100215624 nonsynonymous SNV 0.981 4 8 hm5C_associated_SNPs_45748 0 0 1 0 2 MEF2A chr15:100215604 3'AG 100215604 Downstream 21bp
chr15 100215624 100215624 1 + G A UCEC 100215637 + 100215617 100215657 41 CACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGTC CACTACAAACCTCACAGTGCCAAATGGAGCTGGAAGCAGTC < 41bp 1 0.271071961224188 1 0.457383155822754 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEF2A ENSG00000068305 CDS Human protein_coding chr15:100215637 chr15:100215624 nonsynonymous SNV 0.981 4 8 hm5C_associated_SNPs_45748 0 0 1 0 2 MEF2A chr15:100215663 5'GT 100215663 Upstream 40bp
chr5 145858109 145858109 1 + G A UCEC 145858103 + 145858083 145858123 41 GGTCTTCTTTTATAATCCCACCACTCGTCTTTCTATGTGGG GGTCTTCTTTTATAATCCCACCACTCATCTTTCTATGTGGG < 41bp 1 0.0650412797978777 1 0.0461867153644562 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145858103 chr5:145858109 nonsynonymous SNV 0.997 4 27 hm5C_associated_SNPs_45750 0 0 1 0 1 TCERG1 chr5:145858056 3'AG 145858056 Downstream 54bp
chr5 14359525 14359525 1 + C T UCEC 14359530 + 14359510 14359550 41 TCAACCACATTGAGACGGTGCTGCAGCAGCTGGACGAGGCG TCAACCACATTGAGATGGTGCTGCAGCAGCTGGACGAGGCG < 41bp 1 0.348767494814053 1 0.49131640791893 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359530 chr5:14359525 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_45751 0 0 1 0 1 TRIO chr5:14359466 3'AG 14359466 Downstream 60bp
chr19 13051228 13051228 1 + C T UCEC 13051210 + 13051190 13051230 41 AGGATCCTGATGCTTCAAAACCGGAAGACTGGGATGAGCGG AGGATCCTGATGCTTCAAAACCGGAAGACTGGGATGAGTGG < 41bp 1 0.705971022315853 1 0.416328728199005 experiment 0.588057955368294 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051210 chr19:13051228 nonsynonymous SNV 0.996 4 39 hm5C_associated_SNPs_45752 0 0 1 0 1 CALR chr19:13051266 5'GT 13051266 Upstream 39bp
chr19 36227604 36227604 1 + C T UCEC 36227620 + 36227600 36227640 41 CGAGCTCTGAGGAAGAGCCTCCATCCCCAGATGATAAAGAG CGAGTTCTGAGGAAGAGCCTCCATCCCCAGATGATAAAGAG < 41bp 1 0.00751147651703197 1 0.109802752733231 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36227620 chr19:36227604 synonymous SNV . 0 5 hm5C_associated_SNPs_45753 0 0 1 0 1 KMT2B chr19:36227591 3'AG 36227591 Downstream 14bp
chr1 22336327 22336327 1 + G A UCEC 22336307 + 22336287 22336327 41 CAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCG CAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCA < 41bp 1 0.420523190564396 1 0.282875418663025 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336307 chr1:22336327 nonsynonymous SNV 0.389 4 41 hm5C_associated_SNPs_45754 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 24bp
chr1 22336327 22336327 1 + G A UCEC 22336314 + 22336294 22336334 41 ATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCAT ATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCACCTTCAT < 41bp 1 0.327980052981468 1 0.0156124234199524 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336314 chr1:22336327 nonsynonymous SNV 0.389 4 34 hm5C_associated_SNPs_45755 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 24bp
chr1 22336327 22336327 1 + G A UCEC 22336318 + 22336298 22336338 41 GGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGAC GGAAGCCCACGGTGTTCACTCGAGTCTCCACCTTCATCGAC < 41bp 1 0.758773893879155 1 0.318279802799225 experiment 0.48245221224169 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336318 chr1:22336327 nonsynonymous SNV 0.389 4 30 hm5C_associated_SNPs_45756 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 24bp
chr1 22336327 22336327 1 + G A UCEC 22336323 + 22336303 22336343 41 CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT CCCACGGTGTTCACTCGAGTCTCCACCTTCATCGACTGGAT < 41bp 1 0.755224443342985 1 0.797647893428802 experiment 0.48955111331403 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336323 chr1:22336327 nonsynonymous SNV 0.389 4 25 hm5C_associated_SNPs_45757 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 24bp
chr1 22336327 22336327 1 + G A UCEC 22336326 + 22336306 22336346 41 ACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGA ACGGTGTTCACTCGAGTCTCCACCTTCATCGACTGGATTGA < 41bp 1 0.367522080556274 1 0.0266448855400085 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336326 chr1:22336327 nonsynonymous SNV 0.389 4 22 hm5C_associated_SNPs_45758 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 24bp
chr1 22336327 22336327 1 + G A UCEC 22336329 + 22336309 22336349 41 GTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGA GTGTTCACTCGAGTCTCCACCTTCATCGACTGGATTGAGGA < 41bp 1 0.449688320266515 1 0.661939203739166 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336329 chr1:22336327 nonsynonymous SNV 0.389 4 19 hm5C_associated_SNPs_45759 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 24bp
chr1 22336327 22336327 1 + G A UCEC 22336332 + 22336312 22336352 41 TTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGT TTCACTCGAGTCTCCACCTTCATCGACTGGATTGAGGAGGT < 41bp 1 0.34579205838526 1 0.359843850135803 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336332 chr1:22336327 nonsynonymous SNV 0.389 4 16 hm5C_associated_SNPs_45760 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 24bp
chr1 22336327 22336327 1 + G A UCEC 22336335 + 22336315 22336355 41 ACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGTGAG ACTCGAGTCTCCACCTTCATCGACTGGATTGAGGAGGTGAG < 41bp 1 0.57440707263377 1 0.242462307214737 experiment 0.85118585473246 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336335 chr1:22336327 nonsynonymous SNV 0.389 4 13 hm5C_associated_SNPs_45761 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 24bp
chrX 47083802 47083802 1 + T C UCEC 47083794 + 47083774 47083814 41 CTGCCACCAGAGATTGTGCACGAGGACTTGAAGATGGGGTC CTGCCACCAGAGATTGTGCACGAGGACTCGAAGATGGGGTC < 41bp 1 0.704708573338461 1 0.875840902328491 experiment 0.590582853323077 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CDK16 ENSG00000102225 CDS Human other chrX:47083794 chrX:47083802 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_45762 0 0 1 0 1 CDK16 chrX:47083784 3'AG 47083784 Downstream 19bp
chrX 47083802 47083802 1 + T C UCEC 47083814 + 47083794 47083834 41 CGAGGACTTGAAGATGGGGTCTGATGGGGAGAGTGACCAGG CGAGGACTCGAAGATGGGGTCTGATGGGGAGAGTGACCAGG < 41bp 1 0.432091651240003 1 0.107244879007339 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CDK16 ENSG00000102225 CDS Human other chrX:47083814 chrX:47083802 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_45763 0 0 1 0 1 CDK16 chrX:47083784 3'AG 47083784 Downstream 19bp
chr16 19548877 19548877 1 + A G UCEC 19548865 + 19548845 19548885 41 AAAAAGATACCCTAAGGGATCTGGCTTCGTTAACAAGAATA AAAAAGATACCCTAAGGGATCTGGCTTCGTTAGCAAGAATA < 41bp 1 0.424006057551856 1 0.243605494499207 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCP110 ENSG00000103540 CDS Human protein_coding chr16:19548865 chr16:19548877 nonsynonymous SNV 0.993 0 33 hm5C_associated_SNPs_45764 0 0 1 0 1 CCP110 chr16:19548909 5'GT 19548909 Upstream 33bp
chr17 79010741 79010741 1 + C T UCEC 79010724 + 79010704 79010744 41 TTCTCCTTCTGCGCTGAAACCAGAAAGCAGGAACTTTCGTG TTCTCCTTCTGCGCTGAAACCAGAAAGCAGGAACTTTTGTG < 41bp 1 0.469240955259143 1 0.444808840751648 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79010724 chr17:79010741 nonsynonymous SNV 0.008 0 38 hm5C_associated_SNPs_45766 0 0 0 0 2 BAIAP2 chr17:79010663 3'AG 79010663 Downstream 79bp
chr17 79010741 79010741 1 + C T UCEC 79010724 + 79010704 79010744 41 TTCTCCTTCTGCGCTGAAACCAGAAAGCAGGAACTTTCGTG TTCTCCTTCTGCGCTGAAACCAGAAAGCAGGAACTTTTGTG < 41bp 1 0.469240955259143 1 0.444808840751648 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79010724 chr17:79010741 nonsynonymous SNV 0.008 0 38 hm5C_associated_SNPs_45766 0 0 0 0 2 BAIAP2 chr17:79010761 5'GT 79010761 Upstream 21bp
chr19 41807543 41807543 1 + C T UCEC 41807534 + 41807514 41807554 41 TTTGTCCCACTGACGAGGACCTAAAAGACCGAACAATAAAG TTTGTCCCACTGACGAGGACCTAAAAGACTGAACAATAAAG < 41bp 1 0.288845360765067 1 0.191483050584793 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41807534 chr19:41807543 stopgain 0.993 1 30 hm5C_associated_SNPs_45767 0 0 1 0 1 HNRNPUL1 chr19:41807609 5'GT 41807609 Upstream 67bp
chr1 220313612 220313612 1 + T C UCEC 220313599 + 220313579 220313619 41 ACGTTTTATACCAGAGAGCTCTCTAACTTTTATTTCAGTAT ACGTTTTATACCAGAGAGCTCTCTAACTTTTATCTCAGTAT < 41bp 1 0.347119124392304 1 0.629381060600281 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IARS2 ENSG00000067704 CDS Human protein_coding chr1:220313599 chr1:220313612 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_45768 0 0 1 0 2 IARS2 chr1:220313525 3'AG 220313525 Downstream 88bp
chr1 220313612 220313612 1 + T C UCEC 220313599 + 220313579 220313619 41 ACGTTTTATACCAGAGAGCTCTCTAACTTTTATTTCAGTAT ACGTTTTATACCAGAGAGCTCTCTAACTTTTATCTCAGTAT < 41bp 1 0.347119124392304 1 0.629381060600281 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IARS2 ENSG00000067704 CDS Human protein_coding chr1:220313599 chr1:220313612 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_45768 0 0 1 0 2 IARS2 chr1:220313631 5'GT 220313631 Upstream 20bp
chr19 50338272 50338272 1 + G A UCEC 50338268 + 50338248 50338288 41 CTGCGTGCACTTCCCCCACACGGCGCCCTGTGAGGTGCGCG CTGCGTGCACTTCCCCCACACGGCACCCTGTGAGGTGCGCG < 41bp 1 0.705324364437761 1 0.764578700065613 experiment 0.589351271124477 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50338268 chr19:50338272 synonymous SNV . 0 25 hm5C_associated_SNPs_45769 0 0 0 0 1 MED25 chr19:50338243 3'AG 50338243 Downstream 30bp
chr19 39592170 39592170 1 + G A UCEC 39592152 + 39592132 39592172 41 CTACACCAACCCGCGAGGGCCTGTCCACATCATCACAGGAT CTACACCAACCCGCGAGGGCCTGTCCACATCATCACAGAAT < 41bp 1 0.0706859450962037 1 0.151329815387726 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACP7 ENSG00000183760 CDS Human protein_coding chr19:39592152 chr19:39592170 nonsynonymous SNV 0.270 4 39 hm5C_associated_SNPs_45770 0 0 0 0 2 ACP7 chr19:39592106 3'AG 39592106 Downstream 65bp
chr19 39592170 39592170 1 + G A UCEC 39592152 + 39592132 39592172 41 CTACACCAACCCGCGAGGGCCTGTCCACATCATCACAGGAT CTACACCAACCCGCGAGGGCCTGTCCACATCATCACAGAAT < 41bp 1 0.0706859450962037 1 0.151329815387726 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACP7 ENSG00000183760 CDS Human protein_coding chr19:39592152 chr19:39592170 nonsynonymous SNV 0.270 4 39 hm5C_associated_SNPs_45770 0 0 0 0 2 ACP7 chr19:39592177 5'GT 39592177 Upstream 8bp
chr19 10561589 10561589 1 + G A UCEC 10561575 + 10561555 10561595 41 TGTCTGGAGCAGCTGGAGACCATGCAGACCTATCGCTCTGT TGTCTGGAGCAGCTGGAGACCATGCAGACCTATCACTCTGT < 41bp 1 0.196436937119726 1 0.433032929897308 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561575 chr19:10561589 nonsynonymous SNV 0.984 1 35 hm5C_associated_SNPs_45771 0 0 1 0 2 PDE4A chr19:10561505 3'AG 10561505 Downstream 85bp
chr19 10561589 10561589 1 + G A UCEC 10561575 + 10561555 10561595 41 TGTCTGGAGCAGCTGGAGACCATGCAGACCTATCGCTCTGT TGTCTGGAGCAGCTGGAGACCATGCAGACCTATCACTCTGT < 41bp 1 0.196436937119726 1 0.433032929897308 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561575 chr19:10561589 nonsynonymous SNV 0.984 1 35 hm5C_associated_SNPs_45771 0 0 1 0 2 PDE4A chr19:10561617 5'GT 10561617 Upstream 29bp
chr15 22933577 22933577 1 + C T UCEC 22933564 + 22933544 22933584 41 TCTTTTTGTTTTCAAAGGGCCGCTCAGTTTTTACGTAAAAT TCTTTTTGTTTTCAAAGGGCCGCTCAGTTTTTATGTAAAAT < 41bp 1 0.0229608917783089 1 0.0714161694049835 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22933564 chr15:22933577 nonsynonymous SNV . 0 34 hm5C_associated_SNPs_45772 0 0 1 0 2 CYFIP1 chr15:22933561 3'AG 22933561 Downstream 17bp
chr15 22933577 22933577 1 + C T UCEC 22933564 + 22933544 22933584 41 TCTTTTTGTTTTCAAAGGGCCGCTCAGTTTTTACGTAAAAT TCTTTTTGTTTTCAAAGGGCCGCTCAGTTTTTATGTAAAAT < 41bp 1 0.0229608917783089 1 0.0714161694049835 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22933564 chr15:22933577 nonsynonymous SNV . 0 34 hm5C_associated_SNPs_45772 0 0 1 0 2 CYFIP1 chr15:22933657 5'GT 22933657 Upstream 81bp
chr3 184104639 184104639 1 + A G UCEC 184104655 + 184104635 184104675 41 ACGAACGGTGATCTGTGACCCGGTGGTGTGCCCACCGCCCA ACGAGCGGTGATCTGTGACCCGGTGGTGTGCCCACCGCCCA < 41bp 1 0.756004911599501 1 0.72916316986084 experiment 0.487990176800998 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CHRD ENSG00000090539 CDS Human protein_coding chr3:184104655 chr3:184104639 nonsynonymous SNV 0.564 1 5 hm5C_associated_SNPs_45773 0 0 1 0 2 CHRD chr3:184104633 3'AG 184104633 Downstream 7bp
chr3 184104639 184104639 1 + A G UCEC 184104655 + 184104635 184104675 41 ACGAACGGTGATCTGTGACCCGGTGGTGTGCCCACCGCCCA ACGAGCGGTGATCTGTGACCCGGTGGTGTGCCCACCGCCCA < 41bp 1 0.756004911599501 1 0.72916316986084 experiment 0.487990176800998 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CHRD ENSG00000090539 CDS Human protein_coding chr3:184104655 chr3:184104639 nonsynonymous SNV 0.564 1 5 hm5C_associated_SNPs_45773 0 0 1 0 2 CHRD chr3:184104726 5'GT 184104726 Upstream 88bp
chr11 17393601 17393601 1 + A G UCEC 17393604 + 17393584 17393624 41 CTCTCAAGTGCATTCTGAAACACTGGAACTCCTTTGACACT CTCTCAAGTGCATTCTGGAACACTGGAACTCCTTTGACACT < 41bp 1 0.221685790965959 1 0.0984623730182648 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NCR3LG1 ENSG00000188211 CDS Human protein_coding chr11:17393604 chr11:17393601 nonsynonymous SNV 0.732 0 18 hm5C_associated_SNPs_45774 0 0 1 0 1 NCR3LG1 chr11:17393553 3'AG 17393553 Downstream 49bp
chr2 37475367 37475367 1 + G A UCEC 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAAAGA < 41bp 1 0.398916921974601 1 0.669553875923157 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475367 synonymous SNV . 0 38 hm5C_associated_SNPs_45775 0 0 1 1 1 NDUFAF7 chr2:37475278 3'AG 37475278 Downstream 90bp
chr2 37475367 37475367 1 + G A UCEC 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAAAGAT < 41bp 1 0.38217753094069 1 0.334486961364746 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475367 synonymous SNV . 0 37 hm5C_associated_SNPs_45776 0 0 1 1 1 NDUFAF7 chr2:37475278 3'AG 37475278 Downstream 90bp
chr10 103908238 103908238 1 + C T UCEC 103908226 + 103908206 103908246 41 CATCCTCATCATCCAGTTCTCGAAGCCGCTCACGATCCCCA CATCCTCATCATCCAGTTCTCGAAGCCGCTCATGATCCCCA < 41bp 1 0.47888017029934 1 0.793367624282837 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103908226 chr10:103908238 stopgain 0.008 1 33 hm5C_associated_SNPs_45777 0 0 1 0 1 PPRC1 chr10:103908278 5'GT 103908278 Upstream 41bp
chr19 52714686 52714686 1 + C T UCEC 52714692 + 52714672 52714712 41 CGCACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCG CGCACCTCGGCCTGTGGCCTCTTCTCCGTCTGCTACCCCCG < 41bp 1 0.433826247827528 1 0.10617795586586 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52714692 chr19:52714686 synonymous SNV . 0 15 hm5C_associated_SNPs_45778 0 0 1 0 1 PPP2R1A chr19:52714745 5'GT 52714745 Upstream 60bp
chr19 52714686 52714686 1 + C T UCEC 52714695 + 52714675 52714715 41 ACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCGAGT ACCTCGGCCTGTGGCCTCTTCTCCGTCTGCTACCCCCGAGT < 41bp 1 0.725992839665183 1 0.900643110275269 experiment 0.548014320669635 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52714695 chr19:52714686 synonymous SNV . 0 12 hm5C_associated_SNPs_45779 0 0 1 0 1 PPP2R1A chr19:52714745 5'GT 52714745 Upstream 60bp
chr9 20923686 20923686 1 + G A UCEC 20923667 + 20923647 20923687 41 CCTTTTGAACAGGGAGAGTCCGGTAGTGAAAGGCAATGCGC CCTTTTGAACAGGGAGAGTCCGGTAGTGAAAGGCAATGCAC < 41bp 1 0.574613513587418 1 0.275038450956345 experiment 0.850772972825164 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20923667 chr9:20923686 synonymous SNV . 0 40 hm5C_associated_SNPs_45780 0 0 0 0 2 FOCAD chr9:20923659 3'AG 20923659 Downstream 28bp
chr9 20923686 20923686 1 + G A UCEC 20923667 + 20923647 20923687 41 CCTTTTGAACAGGGAGAGTCCGGTAGTGAAAGGCAATGCGC CCTTTTGAACAGGGAGAGTCCGGTAGTGAAAGGCAATGCAC < 41bp 1 0.574613513587418 1 0.275038450956345 experiment 0.850772972825164 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20923667 chr9:20923686 synonymous SNV . 0 40 hm5C_associated_SNPs_45780 0 0 0 0 2 FOCAD chr9:20923767 5'GT 20923767 Upstream 82bp
chr3 184040728 184040728 1 + G A UCEC 184040721 + 184040701 184040741 41 CCAGAGGGATTGCCACATATCAGTGACGTGGTGCTGGACAA CCAGAGGGATTGCCACATATCAGTGACATGGTGCTGGACAA < 41bp 1 0.643404592823791 1 0.400867104530334 experiment 0.713190814352418 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184040721 chr3:184040728 nonsynonymous SNV 0.997 4 28 hm5C_associated_SNPs_45786 0 0 1 0 1 EIF4G1 chr3:184040742 5'GT 184040742 Upstream 15bp
chr14 105916470 105916470 1 + G A UCEC 105916480 + 105916460 105916500 41 CTGCGGCATCGGGAGCTGTTCCTCTCCCGGCAGCTGGAGTC CTGCGGCATCAGGAGCTGTTCCTCTCCCGGCAGCTGGAGTC < 41bp 1 0.151628574761219 1 0.0918189883232117 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105916480 chr14:105916470 nonsynonymous SNV 0.989 4 11 hm5C_associated_SNPs_45787 0 0 1 0 2 MTA1 chr14:105916395 3'AG 105916395 Downstream 76bp
chr14 105916470 105916470 1 + G A UCEC 105916480 + 105916460 105916500 41 CTGCGGCATCGGGAGCTGTTCCTCTCCCGGCAGCTGGAGTC CTGCGGCATCAGGAGCTGTTCCTCTCCCGGCAGCTGGAGTC < 41bp 1 0.151628574761219 1 0.0918189883232117 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105916480 chr14:105916470 nonsynonymous SNV 0.989 4 11 hm5C_associated_SNPs_45787 0 0 1 0 2 MTA1 chr14:105916521 5'GT 105916521 Upstream 52bp
chr1 148561080 148561080 1 + G A UCEC 148561060 + 148561040 148561080 41 AGAAACTTCCCCATTCGGTGCACCAAGAGCAACCTCACACG AGAAACTTCCCCATTCGGTGCACCAAGAGCAACCTCACACA < 41bp 1 0.536713993395505 1 0.0491900146007538 experiment 0.92657201320899 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBPF25P ENSG00000243452 UTR5 Human other chr1:148561060 chr1:148561080 . . 0 41 hm5C_associated_SNPs_45788 0 0 1 0 1 NBPF25P chr1:148561115 5'GT 148561115 Upstream 36bp
chr1 45270422 45270422 1 + G A UCEC 45270421 + 45270401 45270441 41 CTGGGTATCCTGCGGTACTTCGCCTCCTACATGGAGCAGCA CTGGGTATCCTGCGGTACTTCACCTCCTACATGGAGCAGCA < 41bp 1 0.630598107266232 1 0.281911253929138 experiment 0.738803785467535 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45270421 chr1:45270422 nonsynonymous SNV 0.815 0 22 hm5C_associated_SNPs_45789 0 0 0 0 1 PLK3 chr1:45270451 5'GT 45270451 Upstream 30bp
chr14 89336497 89336497 1 + A G UCEC 89336501 + 89336481 89336521 41 GCATGCATTGGAAGCAACCACTTCTATTCTGATCAGCCAGA GCATGCATTGGAAGCAGCCACTTCTATTCTGATCAGCCAGA < 41bp 1 0.229501083308944 1 0.0619073212146759 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTC8 ENSG00000165533 CDS Human protein_coding chr14:89336501 chr14:89336497 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_45790 0 0 1 0 2 TTC8 chr14:89336403 3'AG 89336403 Downstream 95bp
chr14 89336497 89336497 1 + A G UCEC 89336501 + 89336481 89336521 41 GCATGCATTGGAAGCAACCACTTCTATTCTGATCAGCCAGA GCATGCATTGGAAGCAGCCACTTCTATTCTGATCAGCCAGA < 41bp 1 0.229501083308944 1 0.0619073212146759 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTC8 ENSG00000165533 CDS Human protein_coding chr14:89336501 chr14:89336497 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_45790 0 0 1 0 2 TTC8 chr14:89336542 5'GT 89336542 Upstream 46bp
chrX 2777935 2777935 1 + G A UCEC 2777923 + 2777903 2777943 41 GTCGTCCACTTTTTGGGGTCCATGAAACCTTGGAACTACAA GTCGTCCACTTTTTGGGGTCCATGAAACCTTGAAACTACAA < 41bp 1 0.281545876989297 1 0.278948485851288 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GYG2 ENSG00000056998 CDS Human protein_coding chrX:2777923 chrX:2777935 stopgain 0.791 1 33 hm5C_associated_SNPs_45791 0 0 0 0 1 GYG2 chrX:2777884 3'AG 2777884 Downstream 52bp
chr11 64085799 64085799 1 + T C UCEC 64085786 + 64085766 64085806 41 GCAGCGGCAGCAAGACGGTACAGTGAAGGAGAGTGGGCGTC GCAGCGGCAGCAAGACGGTACAGTGAAGGAGAGCGGGCGTC < 41bp 1 0.640850189377742 1 0.262965768575668 experiment 0.718299621244517 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRDX5 ENSG00000126432 CDS Human protein_coding chr11:64085786 chr11:64085799 nonsynonymous SNV 0.085 0 34 hm5C_associated_SNPs_45792 0 0 1 0 1 PRDX5 chr11:64085858 5'GT 64085858 Upstream 60bp
chr3 40353050 40353050 1 + G T UCEC 40353054 + 40353034 40353074 41 GAAAAAACATCTGCCAGTTTCTCTTGGAGGTGAGTGATTGG GAAAAAACATCTGCCATTTTCTCTTGGAGGTGAGTGATTGG < 41bp 1 0.45522632917037 1 0.211148858070374 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF1B ENSG00000114784 CDS Human protein_coding chr3:40353054 chr3:40353050 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_45793 0 0 1 0 2 EIF1B chr3:40352961 3'AG 40352961 Downstream 90bp
chr3 40353050 40353050 1 + G T UCEC 40353054 + 40353034 40353074 41 GAAAAAACATCTGCCAGTTTCTCTTGGAGGTGAGTGATTGG GAAAAAACATCTGCCATTTTCTCTTGGAGGTGAGTGATTGG < 41bp 1 0.45522632917037 1 0.211148858070374 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF1B ENSG00000114784 CDS Human protein_coding chr3:40353054 chr3:40353050 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_45793 0 0 1 0 2 EIF1B chr3:40353062 5'GT 40353062 Upstream 13bp
chr3 126725010 126725010 1 + C T UCEC 126725001 + 126724981 126725021 41 TCTGTGGACTTCGTCTTCTACAACTGCAGCGTCCACCAGTC TCTGTGGACTTCGTCTTCTACAACTGCAGTGTCCACCAGTC < 41bp 1 0.233834566720427 1 0.26050528883934 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126725001 chr3:126725010 synonymous SNV . 0 30 hm5C_associated_SNPs_45794 0 0 1 0 2 PLXNA1 chr3:126724922 3'AG 126724922 Downstream 89bp
chr3 126725010 126725010 1 + C T UCEC 126725001 + 126724981 126725021 41 TCTGTGGACTTCGTCTTCTACAACTGCAGCGTCCACCAGTC TCTGTGGACTTCGTCTTCTACAACTGCAGTGTCCACCAGTC < 41bp 1 0.233834566720427 1 0.26050528883934 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126725001 chr3:126725010 synonymous SNV . 0 30 hm5C_associated_SNPs_45794 0 0 1 0 2 PLXNA1 chr3:126725021 5'GT 126725021 Upstream 12bp
chr6 31602097 31602097 1 + G T UCEC 31602080 + 31602060 31602100 41 TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCA TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACATGCA < 41bp 1 0.41193530380043 1 0.820781111717224 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602080 chr6:31602097 nonsynonymous SNV 0.997 3 38 hm5C_associated_SNPs_45795 0 0 1 0 2 PRRC2A chr6:31602013 3'AG 31602013 Downstream 85bp
chr6 31602097 31602097 1 + G T UCEC 31602080 + 31602060 31602100 41 TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCA TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACATGCA < 41bp 1 0.41193530380043 1 0.820781111717224 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602080 chr6:31602097 nonsynonymous SNV 0.997 3 38 hm5C_associated_SNPs_45795 0 0 1 0 2 PRRC2A chr6:31602142 5'GT 31602142 Upstream 46bp
chr19 15224375 15224375 1 + C T UCEC 15224376 + 15224356 15224396 41 CCTGTCTCCCTTCAGATCCCCGCCTGCCCCGACAATCTCCA CCTGTCTCCCTTCAGATCCTCGCCTGCCCCGACAATCTCCA < 41bp 1 0.265097356272198 1 0.0585660338401794 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15224376 chr19:15224375 synonymous SNV . 0 20 hm5C_associated_SNPs_45797 0 0 0 0 1 SYDE1 chr19:15224371 3'AG 15224371 Downstream 5bp
chr1 22331944 22331944 1 + C T UCEC 22331945 + 22331925 22331965 41 CTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGG CTCCTGGGCCACCAGGTTTTCCTGCAGTATGAGAAAAGTGG < 41bp 1 0.0815440565960126 1 0.23332467675209 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331945 chr1:22331944 nonsynonymous SNV 0.916 4 20 hm5C_associated_SNPs_45798 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 5bp
chr1 22331944 22331944 1 + C T UCEC 22331945 + 22331925 22331965 41 CTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGG CTCCTGGGCCACCAGGTTTTCCTGCAGTATGAGAAAAGTGG < 41bp 1 0.0815440565960126 1 0.23332467675209 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331945 chr1:22331944 nonsynonymous SNV 0.916 4 20 hm5C_associated_SNPs_45798 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 94bp
chr1 22331944 22331944 1 + C T UCEC 22331949 + 22331929 22331969 41 TGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGGAAGC TGGGCCACCAGGTTTTCCTGCAGTATGAGAAAAGTGGAAGC < 41bp 1 0.560684621748244 1 0.279086470603943 experiment 0.878630756503513 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331949 chr1:22331944 nonsynonymous SNV 0.916 4 16 hm5C_associated_SNPs_45799 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 5bp
chr1 22331944 22331944 1 + C T UCEC 22331949 + 22331929 22331969 41 TGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGGAAGC TGGGCCACCAGGTTTTCCTGCAGTATGAGAAAAGTGGAAGC < 41bp 1 0.560684621748244 1 0.279086470603943 experiment 0.878630756503513 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331949 chr1:22331944 nonsynonymous SNV 0.916 4 16 hm5C_associated_SNPs_45799 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 94bp
chr19 34868408 34868408 1 + C T UCEC 34868413 + 34868393 34868433 41 TCGCCCCTGTGCCAGCGTGTCCGGAGCGGTGACTGGAAGGG TCGCCCCTGTGCCAGTGTGTCCGGAGCGGTGACTGGAAGGG < 41bp 1 0.726281755847144 1 0.493001848459244 experiment 0.547436488305711 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868413 chr19:34868408 nonsynonymous SNV 0.992 2 16 hm5C_associated_SNPs_45800 0 0 1 0 2 GPI chr19:34868408 5'GT 34868408 Upstream 1bp
chr19 34868408 34868408 1 + C T UCEC 34868413 + 34868393 34868433 41 TCGCCCCTGTGCCAGCGTGTCCGGAGCGGTGACTGGAAGGG TCGCCCCTGTGCCAGTGTGTCCGGAGCGGTGACTGGAAGGG < 41bp 1 0.726281755847144 1 0.493001848459244 experiment 0.547436488305711 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868413 chr19:34868408 nonsynonymous SNV 0.992 2 16 hm5C_associated_SNPs_45800 0 0 1 0 2 GPI chr19:34868491 5'GT 34868491 Upstream 84bp
chr1 17265622 17265622 1 + C T UCEC 17265609 + 17265589 17265629 41 GCTCGCCCTGATCCACTCCGCCCTGCACAAGCGCCAGCTGC GCTCGCCCTGATCCACTCCGCCCTGCACAAGCGTCAGCTGC < 41bp 1 0.0864130470267148 1 0.241544187068939 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CROCC ENSG00000058453 CDS Human protein_coding chr1:17265609 chr1:17265622 synonymous SNV . 0 34 hm5C_associated_SNPs_45803 0 0 0 0 1 CROCC chr1:17265637 5'GT 17265637 Upstream 16bp
chr19 13054431 13054431 1 + G A UCEC 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTGAGGAGTTTGGCAACGAGACGTGAGGCGTAAC < 41bp 1 0.631186492749257 1 0.785386741161346 experiment 0.737627014501487 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054431 stopgain 0.883 1 33 hm5C_associated_SNPs_45804 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 81bp
chr19 13054431 13054431 1 + G A UCEC 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTGAGGAGTTTGGCAACGAGACGTGAGGCGTAAC < 41bp 1 0.631186492749257 1 0.785386741161346 experiment 0.737627014501487 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054431 stopgain 0.883 1 33 hm5C_associated_SNPs_45804 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 13bp
chr15 39876523 39876523 1 + C T UCEC 39876541 + 39876521 39876561 41 GGCCAATGAGCTGAGGCGGCCTCCCCTATGCTATCACAACG GGTCAATGAGCTGAGGCGGCCTCCCCTATGCTATCACAACG < 41bp 1 0.199568137163827 1 0.379682272672653 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control THBS1 ENSG00000137801 CDS Human protein_coding chr15:39876541 chr15:39876523 nonsynonymous SNV 0.992 0 3 hm5C_associated_SNPs_45808 0 0 1 0 1 THBS1 chr15:39876501 3'AG 39876501 Downstream 23bp
chr19 41106048 41106048 1 + G T UCEC 41106028 + 41106008 41106048 41 CGGCCCCGGGGGCCAGGGGGCCGGGGACTACTGAGAAGGAG CGGCCCCGGGGGCCAGGGGGCCGGGGACTACTGAGAAGGAT < 41bp 1 0.539970547436038 1 0.810677170753479 experiment 0.920058905127925 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41106028 chr19:41106048 nonsynonymous SNV 0.996 2 41 hm5C_associated_SNPs_45809 0 0 0 0 2 LTBP4 chr19:41105974 3'AG 41105974 Downstream 75bp
chr19 41106048 41106048 1 + G T UCEC 41106028 + 41106008 41106048 41 CGGCCCCGGGGGCCAGGGGGCCGGGGACTACTGAGAAGGAG CGGCCCCGGGGGCCAGGGGGCCGGGGACTACTGAGAAGGAT < 41bp 1 0.539970547436038 1 0.810677170753479 experiment 0.920058905127925 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41106028 chr19:41106048 nonsynonymous SNV 0.996 2 41 hm5C_associated_SNPs_45809 0 0 0 0 2 LTBP4 chr19:41106083 5'GT 41106083 Upstream 36bp
chr19 41106048 41106048 1 + G T UCEC 41106029 + 41106009 41106049 41 GGCCCCGGGGGCCAGGGGGCCGGGGACTACTGAGAAGGAGG GGCCCCGGGGGCCAGGGGGCCGGGGACTACTGAGAAGGATG < 41bp 1 0.734533625733394 1 0.855315208435059 experiment 0.530932748533212 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41106029 chr19:41106048 nonsynonymous SNV 0.996 2 40 hm5C_associated_SNPs_45810 0 0 0 0 2 LTBP4 chr19:41105974 3'AG 41105974 Downstream 75bp
chr19 41106048 41106048 1 + G T UCEC 41106029 + 41106009 41106049 41 GGCCCCGGGGGCCAGGGGGCCGGGGACTACTGAGAAGGAGG GGCCCCGGGGGCCAGGGGGCCGGGGACTACTGAGAAGGATG < 41bp 1 0.734533625733394 1 0.855315208435059 experiment 0.530932748533212 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41106029 chr19:41106048 nonsynonymous SNV 0.996 2 40 hm5C_associated_SNPs_45810 0 0 0 0 2 LTBP4 chr19:41106083 5'GT 41106083 Upstream 36bp
chr2 135160677 135160677 1 + G A UCEC 135160666 + 135160646 135160686 41 TACGTGAAAAACCATGGTATCCTCAGTGGACGGGACCTGCA TACGTGAAAAACCATGGTATCCTCAGTGGACAGGACCTGCA < 41bp 1 0.199639659230959 1 0.067219078540802 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135160666 chr2:135160677 nonsynonymous SNV 0.978 3 32 hm5C_associated_SNPs_45811 0 0 1 0 1 MGAT5 chr2:135160708 5'GT 135160708 Upstream 32bp
chr17 36508881 36508881 1 + G A UCEC 36508864 + 36508844 36508884 41 AGAGCTGGCTGCTTCAGCTGCGAGCCTGACAGACATGGGAG AGAGCTGGCTGCTTCAGCTGCGAGCCTGACAGACATGAGAG < 41bp 1 0.45773419233511 1 0.401047348976135 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SOCS7 ENSG00000174111 CDS Human other chr17:36508864 chr17:36508881 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_45812 0 0 1 0 1 SOCS7 chr17:36508915 5'GT 36508915 Upstream 35bp
chr17 36508881 36508881 1 + G A UCEC 36508869 + 36508849 36508889 41 TGGCTGCTTCAGCTGCGAGCCTGACAGACATGGGAGGCTCT TGGCTGCTTCAGCTGCGAGCCTGACAGACATGAGAGGCTCT < 41bp 1 0.120734706620388 1 0.137900084257126 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SOCS7 ENSG00000174111 CDS Human other chr17:36508869 chr17:36508881 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_45813 0 0 1 0 1 SOCS7 chr17:36508915 5'GT 36508915 Upstream 35bp
chr19 49967978 49967978 1 + T C UCEC 49967998 + 49967978 49968018 41 TGTTCCCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCA CGTTCCCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCA < 41bp 1 0.553076360367665 1 0.588594496250153 experiment 0.89384727926467 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH16A1 ENSG00000161618 CDS Human other chr19:49967998 chr19:49967978 synonymous SNV . 0 1 hm5C_associated_SNPs_45814 0 0 1 0 2 ALDH16A1 chr19:49967889 3'AG 49967889 Downstream 90bp
chr19 49967978 49967978 1 + T C UCEC 49967998 + 49967978 49968018 41 TGTTCCCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCA CGTTCCCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCA < 41bp 1 0.553076360367665 1 0.588594496250153 experiment 0.89384727926467 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49967998 chr19:49967978 synonymous SNV . 0 1 hm5C_associated_SNPs_45814 0 0 1 0 2 ALDH16A1 chr19:49968019 5'GT 49968019 Upstream 42bp
chr7 36445879 36445879 1 + G A UCEC 36445868 + 36445848 36445888 41 CCCTCCCAGACCTCTGCTTTCAAATGCCTCGGCAACTCCAG CCCTCCCAGACCTCTGCTTTCAAATGCCTCGACAACTCCAG < 41bp 1 0.557778359372264 1 0.478291302919388 experiment 0.884443281255472 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36445868 chr7:36445879 nonsynonymous SNV 0.087 2 32 hm5C_associated_SNPs_45815 0 0 1 0 1 ANLN chr7:36445790 3'AG 36445790 Downstream 90bp
chr1 154303954 154303954 1 + G A UCEC 154303952 + 154303932 154303972 41 AGCGATAACCAGGTGAATAACCGCCAGTCTCAGGTGCTGAT AGCGATAACCAGGTGAATAACCACCAGTCTCAGGTGCTGAT < 41bp 1 0.100535375804722 1 0.0653940439224243 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154303952 chr1:154303954 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_45816 0 0 1 0 2 ATP8B2 chr1:154303920 3'AG 154303920 Downstream 35bp
chr1 154303954 154303954 1 + G A UCEC 154303952 + 154303932 154303972 41 AGCGATAACCAGGTGAATAACCGCCAGTCTCAGGTGCTGAT AGCGATAACCAGGTGAATAACCACCAGTCTCAGGTGCTGAT < 41bp 1 0.100535375804722 1 0.0653940439224243 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154303952 chr1:154303954 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_45816 0 0 1 0 2 ATP8B2 chr1:154303981 5'GT 154303981 Upstream 28bp
chr1 155288058 155288058 1 + G A UCEC 155288044 + 155288024 155288064 41 TGAAGCTCTATTGCCGGGAGCAGCCCTATTACCTGAACCTG TGAAGCTCTATTGCCGGGAGCAGCCCTATTACCTAAACCTG < 41bp 1 0.243416102730994 1 0.203077048063278 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155288044 chr1:155288058 synonymous SNV . 0 35 hm5C_associated_SNPs_45817 0 0 1 0 2 FDPS chr1:155287960 3'AG 155287960 Downstream 99bp
chr1 155288058 155288058 1 + G A UCEC 155288044 + 155288024 155288064 41 TGAAGCTCTATTGCCGGGAGCAGCCCTATTACCTGAACCTG TGAAGCTCTATTGCCGGGAGCAGCCCTATTACCTAAACCTG < 41bp 1 0.243416102730994 1 0.203077048063278 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155288044 chr1:155288058 synonymous SNV . 0 35 hm5C_associated_SNPs_45817 0 0 1 0 2 FDPS chr1:155288082 5'GT 155288082 Upstream 25bp
chr17 28958939 28958939 1 + G A UCEC 28958929 + 28958909 28958949 41 TGGGAGTGAGCAGCTAGACACCAATGACGAGAGTGATGTTA TGGGAGTGAGCAGCTAGACACCAATGACGAAAGTGATGTTA < 41bp 1 0.144029878550097 1 0.0642244815826416 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LOC107133515 ENSG00000214719;ENSG00000250462 ncRNA_exonic Human other chr17:28958929 chr17:28958939 . . 0 31 hm5C_associated_SNPs_45818 0 0 1 0 2 LOC107133515 chr17:28958945 5'GT 28958945 Upstream 7bp
chr17 28958939 28958939 1 + G A UCEC 28958929 + 28958909 28958949 41 TGGGAGTGAGCAGCTAGACACCAATGACGAGAGTGATGTTA TGGGAGTGAGCAGCTAGACACCAATGACGAAAGTGATGTTA < 41bp 1 0.144029878550097 1 0.0642244815826416 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LOC107133515 ENSG00000214719;ENSG00000250462 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:28958929 chr17:28958939 . . 0 31 hm5C_associated_SNPs_45818 0 0 1 0 2 LOC107133515 chr17:28958997 5'GT 28958997 Upstream 59bp
chrX 70517257 70517257 1 + G T UCEC 70517240 + 70517220 70517260 41 TTTTTAGATTTGATGAGGCGCCAAGAAGAACTTCGGAGGAT TTTTTAGATTTGATGAGGCGCCAAGAAGAACTTCGGATGAT < 41bp 1 0.147198106363668 1 0.23172590136528 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NONO ENSG00000147140 CDS Human protein_coding chrX:70517240 chrX:70517257 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_45819 0 0 1 0 2 NONO chrX:70517227 3'AG 70517227 Downstream 31bp
chrX 70517257 70517257 1 + G T UCEC 70517240 + 70517220 70517260 41 TTTTTAGATTTGATGAGGCGCCAAGAAGAACTTCGGAGGAT TTTTTAGATTTGATGAGGCGCCAAGAAGAACTTCGGATGAT < 41bp 1 0.147198106363668 1 0.23172590136528 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NONO ENSG00000147140 CDS Human protein_coding chrX:70517240 chrX:70517257 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_45819 0 0 1 0 2 NONO chrX:70517311 5'GT 70517311 Upstream 55bp
chrX 70517257 70517257 1 + G T UCEC 70517241 + 70517221 70517261 41 TTTTAGATTTGATGAGGCGCCAAGAAGAACTTCGGAGGATG TTTTAGATTTGATGAGGCGCCAAGAAGAACTTCGGATGATG < 41bp 1 0.681719997962007 1 0.20798197388649 experiment 0.636560004075986 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NONO ENSG00000147140 CDS Human protein_coding chrX:70517241 chrX:70517257 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_45820 0 0 1 0 2 NONO chrX:70517227 3'AG 70517227 Downstream 31bp
chrX 70517257 70517257 1 + G T UCEC 70517241 + 70517221 70517261 41 TTTTAGATTTGATGAGGCGCCAAGAAGAACTTCGGAGGATG TTTTAGATTTGATGAGGCGCCAAGAAGAACTTCGGATGATG < 41bp 1 0.681719997962007 1 0.20798197388649 experiment 0.636560004075986 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NONO ENSG00000147140 CDS Human protein_coding chrX:70517241 chrX:70517257 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_45820 0 0 1 0 2 NONO chrX:70517311 5'GT 70517311 Upstream 55bp
chrX 70517257 70517257 1 + G T UCEC 70517253 + 70517233 70517273 41 TGAGGCGCCAAGAAGAACTTCGGAGGATGGAAGAGCTGCAC TGAGGCGCCAAGAAGAACTTCGGATGATGGAAGAGCTGCAC < 41bp 1 0.455320794528122 1 0.726439476013184 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517253 chrX:70517257 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_45821 0 0 1 0 2 NONO chrX:70517227 3'AG 70517227 Downstream 31bp
chrX 70517257 70517257 1 + G T UCEC 70517253 + 70517233 70517273 41 TGAGGCGCCAAGAAGAACTTCGGAGGATGGAAGAGCTGCAC TGAGGCGCCAAGAAGAACTTCGGATGATGGAAGAGCTGCAC < 41bp 1 0.455320794528122 1 0.726439476013184 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517253 chrX:70517257 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_45821 0 0 1 0 2 NONO chrX:70517311 5'GT 70517311 Upstream 55bp
chr17 78087039 78087039 1 + G C UCEC 78087058 + 78087038 78087078 41 AGCGAGCCGGCCCAGCAGGCCATGAGGAAGGCCCTCACCCT ACCGAGCCGGCCCAGCAGGCCATGAGGAAGGCCCTCACCCT < 41bp 1 0.688507765605486 1 0.300926029682159 experiment 0.622984468789028 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78087058 chr17:78087039 nonsynonymous SNV 0.958 4 2 hm5C_associated_SNPs_45827 0 0 1 0 1 GAA chr17:78087017 3'AG 78087017 Downstream 23bp
chr6 109763765 109763765 1 + G A UCEC 109763767 + 109763747 109763787 41 TCCATGCCGAATACAATCGACAGAAGGACATCTACCTAGCA TCCATGCCGAATACAATCAACAGAAGGACATCTACCTAGCA < 41bp 1 0.591712591658636 1 0.458701401948929 experiment 0.816574816682728 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109763767 chr6:109763765 nonsynonymous SNV 0.337 4 19 hm5C_associated_SNPs_45828 0 0 1 0 2 SMPD2 chr6:109763746 3'AG 109763746 Downstream 20bp
chr6 109763765 109763765 1 + G A UCEC 109763767 + 109763747 109763787 41 TCCATGCCGAATACAATCGACAGAAGGACATCTACCTAGCA TCCATGCCGAATACAATCAACAGAAGGACATCTACCTAGCA < 41bp 1 0.591712591658636 1 0.458701401948929 experiment 0.816574816682728 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109763767 chr6:109763765 nonsynonymous SNV 0.337 4 19 hm5C_associated_SNPs_45828 0 0 1 0 2 SMPD2 chr6:109763828 5'GT 109763828 Upstream 64bp
chr4 48384653 48384653 1 + C T UCEC 48384660 + 48384640 48384680 41 CAATTCTACAAGACGGGGTACTTTTAGTGATCAGGAACTTG CAATTCTACAAGATGGGGTACTTTTAGTGATCAGGAACTTG < 41bp 1 0.0224295723001034 1 0.0167497098445892 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLAIN2 ENSG00000109171 CDS Human protein_coding chr4:48384660 chr4:48384653 nonsynonymous SNV 0.997 4 14 hm5C_associated_SNPs_45830 0 0 1 0 1 SLAIN2 chr4:48384585 3'AG 48384585 Downstream 69bp
chr17 41585003 41585003 1 + G A UCEC 41585007 + 41584987 41585027 41 GATCATCATGTTGGACGAGGCACATGAGAGGACAATTCACA GATCATCATGTTGGACAAGGCACATGAGAGGACAATTCACA < 41bp 1 0.317367580733533 1 0.17764738202095 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41585007 chr17:41585003 nonsynonymous SNV 0.308 3 17 hm5C_associated_SNPs_45831 0 0 1 0 1 DHX8 chr17:41585056 5'GT 41585056 Upstream 54bp
chr7 2419050 2419050 1 + A G UCEC 2419036 + 2419016 2419056 41 TTTGTCCCCTCAGGGGTGGACACTGACGAGCTGGACAGCAA TTTGTCCCCTCAGGGGTGGACACTGACGAGCTGGGCAGCAA < 41bp 1 0.428582885683165 1 0.0847239196300507 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2419036 chr7:2419050 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_45832 0 0 1 1 2 EIF3B chr7:2419029 3'AG 2419029 Downstream 22bp
chr7 2419050 2419050 1 + A G UCEC 2419036 + 2419016 2419056 41 TTTGTCCCCTCAGGGGTGGACACTGACGAGCTGGACAGCAA TTTGTCCCCTCAGGGGTGGACACTGACGAGCTGGGCAGCAA < 41bp 1 0.428582885683165 1 0.0847239196300507 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2419036 chr7:2419050 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_45832 0 0 1 1 2 EIF3B chr7:2419146 5'GT 2419146 Upstream 97bp
chr7 2419050 2419050 1 + A G UCEC 2419038 + 2419018 2419058 41 TGTCCCCTCAGGGGTGGACACTGACGAGCTGGACAGCAACG TGTCCCCTCAGGGGTGGACACTGACGAGCTGGGCAGCAACG < 41bp 1 0.462048055446428 1 0.0488315522670746 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2419038 chr7:2419050 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_45833 0 0 1 1 2 EIF3B chr7:2419029 3'AG 2419029 Downstream 22bp
chr7 2419050 2419050 1 + A G UCEC 2419038 + 2419018 2419058 41 TGTCCCCTCAGGGGTGGACACTGACGAGCTGGACAGCAACG TGTCCCCTCAGGGGTGGACACTGACGAGCTGGGCAGCAACG < 41bp 1 0.462048055446428 1 0.0488315522670746 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2419038 chr7:2419050 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_45833 0 0 1 1 2 EIF3B chr7:2419146 5'GT 2419146 Upstream 97bp
chr7 2419050 2419050 1 + A G UCEC 2419051 + 2419031 2419071 41 GTGGACACTGACGAGCTGGACAGCAACGTGGACGACTGGGA GTGGACACTGACGAGCTGGGCAGCAACGTGGACGACTGGGA < 41bp 1 0.691100235743268 1 0.308981359004974 experiment 0.617799528513463 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2419051 chr7:2419050 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_45834 0 0 1 1 2 EIF3B chr7:2419029 3'AG 2419029 Downstream 22bp
chr7 2419050 2419050 1 + A G UCEC 2419051 + 2419031 2419071 41 GTGGACACTGACGAGCTGGACAGCAACGTGGACGACTGGGA GTGGACACTGACGAGCTGGGCAGCAACGTGGACGACTGGGA < 41bp 1 0.691100235743268 1 0.308981359004974 experiment 0.617799528513463 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2419051 chr7:2419050 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_45834 0 0 1 1 2 EIF3B chr7:2419146 5'GT 2419146 Upstream 97bp
chr7 94917898 94917898 1 + C T UCEC 94917917 + 94917897 94917937 41 CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA CTGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA < 41bp 1 0.559741963718679 1 0.196966737508774 experiment 0.880516072562642 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917917 chr7:94917898 synonymous SNV . 0 2 hm5C_associated_SNPs_45835 0 0 0 0 1 PPP1R9A chr7:94917848 3'AG 94917848 Downstream 51bp
chr19 46025462 46025462 1 + G A UCEC 46025467 + 46025447 46025487 41 GCACATAGAGCGCCGGGTCTCCAATGCAGGTGATGCTCAGA GCACATAGAGCGCCGAGTCTCCAATGCAGGTGATGCTCAGA < 41bp 1 0.204769297360263 1 0.404457092285156 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46025467 chr19:46025462 synonymous SNV . 0 16 hm5C_associated_SNPs_45836 0 0 1 0 2 VASP chr19:46025426 3'AG 46025426 Downstream 37bp
chr19 46025462 46025462 1 + G A UCEC 46025467 + 46025447 46025487 41 GCACATAGAGCGCCGGGTCTCCAATGCAGGTGATGCTCAGA GCACATAGAGCGCCGAGTCTCCAATGCAGGTGATGCTCAGA < 41bp 1 0.204769297360263 1 0.404457092285156 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46025467 chr19:46025462 synonymous SNV . 0 16 hm5C_associated_SNPs_45836 0 0 1 0 2 VASP chr19:46025475 5'GT 46025475 Upstream 14bp
chr19 46025462 46025462 1 + G A UCEC 46025468 + 46025448 46025488 41 CACATAGAGCGCCGGGTCTCCAATGCAGGTGATGCTCAGAT CACATAGAGCGCCGAGTCTCCAATGCAGGTGATGCTCAGAT < 41bp 1 0.303054152924071 1 0.359345525503159 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46025468 chr19:46025462 synonymous SNV . 0 15 hm5C_associated_SNPs_45837 0 0 1 0 2 VASP chr19:46025426 3'AG 46025426 Downstream 37bp
chr19 46025462 46025462 1 + G A UCEC 46025468 + 46025448 46025488 41 CACATAGAGCGCCGGGTCTCCAATGCAGGTGATGCTCAGAT CACATAGAGCGCCGAGTCTCCAATGCAGGTGATGCTCAGAT < 41bp 1 0.303054152924071 1 0.359345525503159 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46025468 chr19:46025462 synonymous SNV . 0 15 hm5C_associated_SNPs_45837 0 0 1 0 2 VASP chr19:46025475 5'GT 46025475 Upstream 14bp
chr10 102112174 102112174 1 + G A UCEC 102112188 + 102112168 102112208 41 CTCATCGTCTGTGGAGCCACCGCTCTTACAAAGCTCGGCTG CTCATCATCTGTGGAGCCACCGCTCTTACAAAGCTCGGCTG < 41bp 1 0.410396960768082 1 0.744503617286682 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCD ENSG00000099194 CDS Human protein_coding chr10:102112188 chr10:102112174 nonsynonymous SNV 0.462 4 7 hm5C_associated_SNPs_45839 0 0 1 0 2 SCD chr10:102112123 3'AG 102112123 Downstream 52bp
chr10 102112174 102112174 1 + G A UCEC 102112188 + 102112168 102112208 41 CTCATCGTCTGTGGAGCCACCGCTCTTACAAAGCTCGGCTG CTCATCATCTGTGGAGCCACCGCTCTTACAAAGCTCGGCTG < 41bp 1 0.410396960768082 1 0.744503617286682 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCD ENSG00000099194 CDS Human protein_coding chr10:102112188 chr10:102112174 nonsynonymous SNV 0.462 4 7 hm5C_associated_SNPs_45839 0 0 1 0 2 SCD chr10:102112253 5'GT 102112253 Upstream 80bp
chr3 9854718 9854718 1 + G A UCEC 9854727 + 9854707 9854747 41 GATGGTCCATCGCTCAGGCCCCACCCTGCTGCCACCCCAGA GATGGTCCATCACTCAGGCCCCACCCTGCTGCCACCCCAGA < 41bp 1 0.0610620254553295 1 0.0436374545097351 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARPC4-TTLL3;TTLL3 ENSG00000214021;ENSG00000250151 CDS Human other chr3:9854727 chr3:9854718 nonsynonymous SNV 0.001 0 12 hm5C_associated_SNPs_45840 0 0 1 0 2 ARPC4-TTLL3;TTLL3 chr3:9854627 3'AG 9854627 Downstream 92bp
chr3 9854718 9854718 1 + G A UCEC 9854727 + 9854707 9854747 41 GATGGTCCATCGCTCAGGCCCCACCCTGCTGCCACCCCAGA GATGGTCCATCACTCAGGCCCCACCCTGCTGCCACCCCAGA < 41bp 1 0.0610620254553295 1 0.0436374545097351 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARPC4-TTLL3;TTLL3 ENSG00000214021;ENSG00000250151 CDS Human other chr3:9854727 chr3:9854718 nonsynonymous SNV 0.001 0 12 hm5C_associated_SNPs_45840 0 0 1 0 2 ARPC4-TTLL3;TTLL3 chr3:9854795 5'GT 9854795 Upstream 78bp
chr11 6629288 6629288 1 + C T UCEC 6629293 + 6629273 6629313 41 AAGGGACGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCC AAGGGACGATCATGGTTTCTCCCCCTTGCACTGGGCCTGCC < 41bp 1 0.28325204738743 1 0.554110288619995 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6629293 chr11:6629288 synonymous SNV . 0 16 hm5C_associated_SNPs_45841 0 0 1 0 1 ILK chr11:6629276 3'AG 6629276 Downstream 13bp
chr11 6629288 6629288 1 + C T UCEC 6629294 + 6629274 6629314 41 AGGGACGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCCG AGGGACGATCATGGTTTCTCCCCCTTGCACTGGGCCTGCCG < 41bp 1 0.196745568555617 1 0.0900666415691376 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6629294 chr11:6629288 synonymous SNV . 0 15 hm5C_associated_SNPs_45842 0 0 1 0 1 ILK chr11:6629276 3'AG 6629276 Downstream 13bp
chrX 48457247 48457247 1 + C T UCEC 48457256 + 48457236 48457276 41 GGGGGCAGCTGCTGGGCCAGCGCTACGGGCCCCTCTCCGAG GGGGGCAGCTGTTGGGCCAGCGCTACGGGCCCCTCTCCGAG < 41bp 1 0.711266725988622 1 0.521912097930908 experiment 0.577466548022756 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457256 chrX:48457247 synonymous SNV . 0 12 hm5C_associated_SNPs_45844 0 0 1 0 1 WDR13 chrX:48457345 5'GT 48457345 Upstream 99bp
chr1 22331951 22331951 1 + G A UCEC 22331944 + 22331924 22331964 41 CCTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTG CCTCCTGGGCCACCAGGTTTCCCTGCAATATGAGAAAAGTG < 41bp 1 0.163904029526602 1 0.159767091274261 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331944 chr1:22331951 synonymous SNV . 0 28 hm5C_associated_SNPs_45845 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 12bp
chr1 22331951 22331951 1 + G A UCEC 22331944 + 22331924 22331964 41 CCTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTG CCTCCTGGGCCACCAGGTTTCCCTGCAATATGAGAAAAGTG < 41bp 1 0.163904029526602 1 0.159767091274261 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331944 chr1:22331951 synonymous SNV . 0 28 hm5C_associated_SNPs_45845 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 87bp
chr1 22331951 22331951 1 + G A UCEC 22331945 + 22331925 22331965 41 CTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGG CTCCTGGGCCACCAGGTTTCCCTGCAATATGAGAAAAGTGG < 41bp 1 0.0625325315869721 1 0.156322956085205 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331945 chr1:22331951 synonymous SNV . 0 27 hm5C_associated_SNPs_45846 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 12bp
chr1 22331951 22331951 1 + G A UCEC 22331945 + 22331925 22331965 41 CTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGG CTCCTGGGCCACCAGGTTTCCCTGCAATATGAGAAAAGTGG < 41bp 1 0.0625325315869721 1 0.156322956085205 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331945 chr1:22331951 synonymous SNV . 0 27 hm5C_associated_SNPs_45846 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 87bp
chr1 22331951 22331951 1 + G A UCEC 22331946 + 22331926 22331966 41 TCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGGA TCCTGGGCCACCAGGTTTCCCTGCAATATGAGAAAAGTGGA < 41bp 1 0.767313687006556 1 0.551392138004303 experiment 0.465372625986889 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331946 chr1:22331951 synonymous SNV . 0 26 hm5C_associated_SNPs_45847 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 12bp
chr1 22331951 22331951 1 + G A UCEC 22331946 + 22331926 22331966 41 TCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGGA TCCTGGGCCACCAGGTTTCCCTGCAATATGAGAAAAGTGGA < 41bp 1 0.767313687006556 1 0.551392138004303 experiment 0.465372625986889 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331946 chr1:22331951 synonymous SNV . 0 26 hm5C_associated_SNPs_45847 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 87bp
chr1 22331951 22331951 1 + G A UCEC 22331949 + 22331929 22331969 41 TGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGGAAGC TGGGCCACCAGGTTTCCCTGCAATATGAGAAAAGTGGAAGC < 41bp 1 0.38819866525377 1 0.235509008169174 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331949 chr1:22331951 synonymous SNV . 0 23 hm5C_associated_SNPs_45848 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 12bp
chr1 22331951 22331951 1 + G A UCEC 22331949 + 22331929 22331969 41 TGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGGAAGC TGGGCCACCAGGTTTCCCTGCAATATGAGAAAAGTGGAAGC < 41bp 1 0.38819866525377 1 0.235509008169174 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331949 chr1:22331951 synonymous SNV . 0 23 hm5C_associated_SNPs_45848 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 87bp
chr1 22331951 22331951 1 + G A UCEC 22331969 + 22331949 22331989 41 CAGTATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGG CAATATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGG < 41bp 1 0.178616959611658 1 0.266539990901947 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331969 chr1:22331951 synonymous SNV . 0 3 hm5C_associated_SNPs_45849 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 12bp
chr1 22331951 22331951 1 + G A UCEC 22331969 + 22331949 22331989 41 CAGTATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGG CAATATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGG < 41bp 1 0.178616959611658 1 0.266539990901947 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331969 chr1:22331951 synonymous SNV . 0 3 hm5C_associated_SNPs_45849 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 87bp
chr17 25904582 25904582 1 + C T UCEC 25904584 + 25904564 25904604 41 AGGCCAAGGTGAAGGAGACGCTGCGGCGCTGTGGGGCCAGC AGGCCAAGGTGAAGGAGATGCTGCGGCGCTGTGGGGCCAGC < 41bp 1 0.740580079900534 1 0.426931262016296 experiment 0.518839840198932 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KSR1 ENSG00000141068 CDS Human protein_coding chr17:25904584 chr17:25904582 nonsynonymous SNV 0.971 1 19 hm5C_associated_SNPs_45850 0 0 1 0 1 KSR1 chr17:25904665 5'GT 25904665 Upstream 84bp
chr21 46931088 46931088 1 + G A UCEC 46931104 + 46931084 46931124 41 GCCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC GCCCAGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC < 41bp 1 0.0530393628263612 1 0.111429274082184 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931104 chr21:46931088 nonsynonymous SNV 0.071 3 5 hm5C_associated_SNPs_45851 0 0 1 0 2 COL18A1 chr21:46931025 3'AG 46931025 Downstream 64bp
chr21 46931088 46931088 1 + G A UCEC 46931104 + 46931084 46931124 41 GCCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC GCCCAGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC < 41bp 1 0.0530393628263612 1 0.111429274082184 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931104 chr21:46931088 nonsynonymous SNV 0.071 3 5 hm5C_associated_SNPs_45851 0 0 1 0 2 COL18A1 chr21:46931140 5'GT 46931140 Upstream 53bp
chr21 46931088 46931088 1 + G A UCEC 46931105 + 46931085 46931125 41 CCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT CCCAGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT < 41bp 1 0.0689193830849104 1 0.0468246936798096 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931105 chr21:46931088 nonsynonymous SNV 0.071 3 4 hm5C_associated_SNPs_45852 0 0 1 0 2 COL18A1 chr21:46931025 3'AG 46931025 Downstream 64bp
chr21 46931088 46931088 1 + G A UCEC 46931105 + 46931085 46931125 41 CCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT CCCAGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT < 41bp 1 0.0689193830849104 1 0.0468246936798096 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931105 chr21:46931088 nonsynonymous SNV 0.071 3 4 hm5C_associated_SNPs_45852 0 0 1 0 2 COL18A1 chr21:46931140 5'GT 46931140 Upstream 53bp
chr17 79663962 79663962 1 + G A UCEC 79663977 + 79663957 79663997 41 TGCACGGCGTGTACATGAGCCAGCCGGCCCCTGCCGCTGGC TGCACAGCGTGTACATGAGCCAGCCGGCCCCTGCCGCTGGC < 41bp 1 0.557163102069552 1 0.5112025141716 experiment 0.885673795860896 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79663977 chr17:79663962 nonsynonymous SNV 0.016 0 6 hm5C_associated_SNPs_45853 0 0 1 0 1 HGS chr17:79664028 5'GT 79664028 Upstream 67bp
chr17 79663962 79663962 1 + G A UCEC 79663980 + 79663960 79664000 41 ACGGCGTGTACATGAGCCAGCCGGCCCCTGCCGCTGGCCCC ACAGCGTGTACATGAGCCAGCCGGCCCCTGCCGCTGGCCCC < 41bp 1 0.3733768026242 1 0.387857884168625 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79663980 chr17:79663962 nonsynonymous SNV 0.016 0 3 hm5C_associated_SNPs_45854 0 0 1 0 1 HGS chr17:79664028 5'GT 79664028 Upstream 67bp
chr14 105927182 105927182 1 + C T UCEC 105927186 + 105927166 105927206 41 TGCCGCAGGGCGGGCCCGTGCTCTGCAGGGACGAGATGGAG TGCCGCAGGGCGGGCCTGTGCTCTGCAGGGACGAGATGGAG < 41bp 1 0.518085879972473 1 0.199661523103714 experiment 0.963828240055054 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105927186 chr14:105927182 synonymous SNV . 0 17 hm5C_associated_SNPs_45855 0 0 1 0 1 MTA1 chr14:105927102 3'AG 105927102 Downstream 81bp
chr19 18960992 18960992 1 + C T UCEC 18961004 + 18960984 18961024 41 TGTCGCAACGTCTTCCTCCTCGGCTTCATCCCGGCCAAAGC TGTCGCAATGTCTTCCTCCTCGGCTTCATCCCGGCCAAAGC < 41bp 1 0.601649318487431 1 0.84890204668045 experiment 0.796701363025137 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18961004 chr19:18960992 synonymous SNV . 0 9 hm5C_associated_SNPs_45857 0 0 1 0 1 UPF1 chr19:18961051 5'GT 18961051 Upstream 60bp
chr11 125513701 125513701 1 + C T UCEC 125513690 + 125513670 125513710 41 TTTGTTTTCTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTT TTTGTTTTCTTTTTTAGGGGCAAAAAGGCCCTGAGTCACTT < 41bp 1 0.405062275239521 1 0.27319073677063 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513690 chr11:125513701 stopgain 0.996 0 32 hm5C_associated_SNPs_45858 0 0 1 3 2 CHEK1 chr11:125513687 3'AG 125513687 Downstream 15bp
chr11 125513701 125513701 1 + C T UCEC 125513690 + 125513670 125513710 41 TTTGTTTTCTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTT TTTGTTTTCTTTTTTAGGGGCAAAAAGGCCCTGAGTCACTT < 41bp 1 0.405062275239521 1 0.27319073677063 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513690 chr11:125513701 stopgain 0.996 0 32 hm5C_associated_SNPs_45858 0 0 1 3 2 CHEK1 chr11:125513795 5'GT 125513795 Upstream 95bp
chr11 125513701 125513701 1 + C T UCEC 125513698 + 125513678 125513718 41 CTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGT CTTTTTTAGGGGCAAAAAGGCCCTGAGTCACTTCAGGTGGT < 41bp 1 0.13303785512191 1 0.186926245689392 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513698 chr11:125513701 stopgain 0.996 0 24 hm5C_associated_SNPs_45859 0 0 1 3 2 CHEK1 chr11:125513687 3'AG 125513687 Downstream 15bp
chr11 125513701 125513701 1 + C T UCEC 125513698 + 125513678 125513718 41 CTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGT CTTTTTTAGGGGCAAAAAGGCCCTGAGTCACTTCAGGTGGT < 41bp 1 0.13303785512191 1 0.186926245689392 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513698 chr11:125513701 stopgain 0.996 0 24 hm5C_associated_SNPs_45859 0 0 1 3 2 CHEK1 chr11:125513795 5'GT 125513795 Upstream 95bp
chr11 125513701 125513701 1 + C T UCEC 125513699 + 125513679 125513719 41 TTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTG TTTTTTAGGGGCAAAAAGGCCCTGAGTCACTTCAGGTGGTG < 41bp 1 0.371423849725464 1 0.18227207660675 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513699 chr11:125513701 stopgain 0.996 0 23 hm5C_associated_SNPs_45860 0 0 1 3 2 CHEK1 chr11:125513687 3'AG 125513687 Downstream 15bp
chr11 125513701 125513701 1 + C T UCEC 125513699 + 125513679 125513719 41 TTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTG TTTTTTAGGGGCAAAAAGGCCCTGAGTCACTTCAGGTGGTG < 41bp 1 0.371423849725464 1 0.18227207660675 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513699 chr11:125513701 stopgain 0.996 0 23 hm5C_associated_SNPs_45860 0 0 1 3 2 CHEK1 chr11:125513795 5'GT 125513795 Upstream 95bp
chr11 125513701 125513701 1 + C T UCEC 125513700 + 125513680 125513720 41 TTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGT TTTTTAGGGGCAAAAAGGCCCTGAGTCACTTCAGGTGGTGT < 41bp 1 0.274133184770787 1 0.0893861949443817 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513700 chr11:125513701 stopgain 0.996 0 22 hm5C_associated_SNPs_45861 0 0 1 3 2 CHEK1 chr11:125513687 3'AG 125513687 Downstream 15bp
chr11 125513701 125513701 1 + C T UCEC 125513700 + 125513680 125513720 41 TTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGT TTTTTAGGGGCAAAAAGGCCCTGAGTCACTTCAGGTGGTGT < 41bp 1 0.274133184770787 1 0.0893861949443817 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513700 chr11:125513701 stopgain 0.996 0 22 hm5C_associated_SNPs_45861 0 0 1 3 2 CHEK1 chr11:125513795 5'GT 125513795 Upstream 95bp
chr1 2419135 2419135 1 + A G UCEC 2419119 + 2419099 2419139 41 AAGATCCTCTTCAAAGACGTCATTGAAACCATCAACAAATA AAGATCCTCTTCAAAGACGTCATTGAAACCATCAACGAATA < 41bp 1 0.0372445906741902 1 0.0375730097293854 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2419119 chr1:2419135 nonsynonymous SNV 0.997 3 37 hm5C_associated_SNPs_45862 0 0 0 0 2 PLCH2 chr1:2419037 3'AG 2419037 Downstream 99bp
chr1 2419135 2419135 1 + A G UCEC 2419119 + 2419099 2419139 41 AAGATCCTCTTCAAAGACGTCATTGAAACCATCAACAAATA AAGATCCTCTTCAAAGACGTCATTGAAACCATCAACGAATA < 41bp 1 0.0372445906741902 1 0.0375730097293854 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2419119 chr1:2419135 nonsynonymous SNV 0.997 3 37 hm5C_associated_SNPs_45862 0 0 0 0 2 PLCH2 chr1:2419157 5'GT 2419157 Upstream 23bp
chr20 35866809 35866809 1 + G A UCEC 35866808 + 35866788 35866828 41 CCTCTTTCCTTTGGCAGGATCGCTGCAGAGCAGAGCAGTAG CCTCTTTCCTTTGGCAGGATCACTGCAGAGCAGAGCAGTAG < 41bp 1 0.252979479048282 1 0.101587027311325 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35866808 chr20:35866809 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_45863 0 0 1 0 2 RPN2 chr20:35866805 3'AG 35866805 Downstream 5bp
chr20 35866809 35866809 1 + G A UCEC 35866808 + 35866788 35866828 41 CCTCTTTCCTTTGGCAGGATCGCTGCAGAGCAGAGCAGTAG CCTCTTTCCTTTGGCAGGATCACTGCAGAGCAGAGCAGTAG < 41bp 1 0.252979479048282 1 0.101587027311325 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35866808 chr20:35866809 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_45863 0 0 1 0 2 RPN2 chr20:35866852 5'GT 35866852 Upstream 44bp
chr8 21844756 21844756 1 + A G UCEC 21844767 + 21844747 21844787 41 GTAAGATCTACATTGGGGACCAAGTGCAGAAATCCTCTAAG GTAAGATCTGCATTGGGGACCAAGTGCAGAAATCCTCTAAG < 41bp 1 0.393761719078187 1 0.623611330986023 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21844767 chr8:21844756 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_45864 0 0 1 0 1 XPO7 chr8:21844787 5'GT 21844787 Upstream 32bp
chr11 75277419 75277419 1 + G A UCEC 75277402 + 75277382 75277422 41 CCACTTCCTGGCCATGCGCTCCCTCCTGCTTCTCAGCGCCT CCACTTCCTGGCCATGCGCTCCCTCCTGCTTCTCAGCACCT < 41bp 1 0.040233858979062 1 0.0284769833087921 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75277402 chr11:75277419 nonsynonymous SNV 0.005 0 38 hm5C_associated_SNPs_45865 0 0 1 0 1 SERPINH1 chr11:75277361 3'AG 75277361 Downstream 59bp
chr11 75277419 75277419 1 + G A UCEC 75277406 + 75277386 75277426 41 TTCCTGGCCATGCGCTCCCTCCTGCTTCTCAGCGCCTTCTG TTCCTGGCCATGCGCTCCCTCCTGCTTCTCAGCACCTTCTG < 41bp 1 0.266141619802324 1 0.159561038017273 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75277406 chr11:75277419 nonsynonymous SNV 0.005 0 34 hm5C_associated_SNPs_45866 0 0 1 0 1 SERPINH1 chr11:75277361 3'AG 75277361 Downstream 59bp
chr13 100920957 100920957 1 + A G UCEC 100920958 + 100920938 100920978 41 TTCAGGTTCTAGGTGATAAACATGGGAATGCTTTATGGCTT TTCAGGTTCTAGGTGATAAGCATGGGAATGCTTTATGGCTT < 41bp 1 0.465386105044442 1 0.404849469661713 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCCA ENSG00000175198 CDS Human protein_coding chr13:100920958 chr13:100920957 synonymous SNV . 0 20 hm5C_associated_SNPs_45868 0 0 1 0 2 PCCA chr13:100920943 3'AG 100920943 Downstream 15bp
chr13 100920957 100920957 1 + A G UCEC 100920958 + 100920938 100920978 41 TTCAGGTTCTAGGTGATAAACATGGGAATGCTTTATGGCTT TTCAGGTTCTAGGTGATAAGCATGGGAATGCTTTATGGCTT < 41bp 1 0.465386105044442 1 0.404849469661713 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCCA ENSG00000175198 CDS Human protein_coding chr13:100920958 chr13:100920957 synonymous SNV . 0 20 hm5C_associated_SNPs_45868 0 0 1 0 2 PCCA chr13:100921037 5'GT 100921037 Upstream 81bp
chr17 43220894 43220894 1 + G A UCEC 43220912 + 43220892 43220932 41 TCGTCGTCCAGTGGCTCTTCCGAATGTTTCGGACCCAAAAG TCATCGTCCAGTGGCTCTTCCGAATGTTTCGGACCCAAAAG < 41bp 1 0.390319683575975 1 0.844249069690704 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43220912 chr17:43220894 nonsynonymous SNV 0.983 0 3 hm5C_associated_SNPs_45870 0 0 1 0 1 ACBD4 chr17:43220810 3'AG 43220810 Downstream 85bp
chr14 65007621 65007621 1 + C T UCEC 65007630 + 65007610 65007650 41 ACCTATTCGTGCGTCGGGGTCTTCCAACATGGCAAGGTGGA ACCTATTCGTGTGTCGGGGTCTTCCAACATGGCAAGGTGGA < 41bp 1 0.124099522165842 1 0.0674143433570862 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSPA2 ENSG00000126803 CDS Human protein_coding chr14:65007630 chr14:65007621 synonymous SNV . 0 12 hm5C_associated_SNPs_45871 0 0 0 0 1 HSPA2 chr14:65007563 3'AG 65007563 Downstream 59bp
chr20 62562233 62562233 1 + G A UCEC 62562230 + 62562210 62562250 41 TTTGTCTTCTGCGGCCTCCTCACGTGCTGCTACTGCTGCTG TTTGTCTTCTGCGGCCTCCTCACATGCTGCTACTGCTGCTG < 41bp 1 0.435484054798577 1 0.428897887468338 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJC5 ENSG00000101152 CDS Human protein_coding chr20:62562230 chr20:62562233 synonymous SNV . 0 24 hm5C_associated_SNPs_45872 0 0 1 6 1 DNAJC5 chr20:62562204 3'AG 62562204 Downstream 30bp
chr21 45400944 45400944 1 + G A UCEC 45400940 + 45400920 45400960 41 GTTTAAGCCTGCCCGGAGGCCGTGGACCCTCCTGAACTTCC GTTTAAGCCTGCCCGGAGGCCGTGAACCCTCCTGAACTTCC < 41bp 1 0.543732276045255 1 0.228305041790009 experiment 0.912535447909491 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AGPAT3 ENSG00000160216 CDS Human protein_coding chr21:45400940 chr21:45400944 stopgain 0.934 1 25 hm5C_associated_SNPs_45873 0 0 1 0 1 AGPAT3 chr21:45400870 3'AG 45400870 Downstream 75bp
chr19 10561581 10561581 1 + G A UCEC 10561575 + 10561555 10561595 41 TGTCTGGAGCAGCTGGAGACCATGCAGACCTATCGCTCTGT TGTCTGGAGCAGCTGGAGACCATGCAAACCTATCGCTCTGT < 41bp 1 0.214857435543569 1 0.44240140914917 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561575 chr19:10561581 synonymous SNV . 0 27 hm5C_associated_SNPs_45874 0 0 1 0 2 PDE4A chr19:10561505 3'AG 10561505 Downstream 77bp
chr19 10561581 10561581 1 + G A UCEC 10561575 + 10561555 10561595 41 TGTCTGGAGCAGCTGGAGACCATGCAGACCTATCGCTCTGT TGTCTGGAGCAGCTGGAGACCATGCAAACCTATCGCTCTGT < 41bp 1 0.214857435543569 1 0.44240140914917 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561575 chr19:10561581 synonymous SNV . 0 27 hm5C_associated_SNPs_45874 0 0 1 0 2 PDE4A chr19:10561617 5'GT 10561617 Upstream 37bp
chr8 41355102 41355102 1 + C T UCEC 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTCGGCGGTCAGTCATATCTCGAAGGTTGT < 41bp 1 0.173211925604444 1 0.109503954648972 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355102 synonymous SNV . 0 20 hm5C_associated_SNPs_45875 0 0 1 2 2 GOLGA7 chr8:41355028 3'AG 41355028 Downstream 75bp
chr8 41355102 41355102 1 + C T UCEC 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTCGGCGGTCAGTCATATCTCGAAGGTTGT < 41bp 1 0.173211925604444 1 0.109503954648972 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355102 synonymous SNV . 0 20 hm5C_associated_SNPs_45875 0 0 1 2 2 GOLGA7 chr8:41355180 5'GT 41355180 Upstream 79bp
chr1 230379169 230379169 1 + C T UCEC 230379152 + 230379132 230379172 41 AATGAGCACTGGCTGGAGCCCCTCCTGGAAAGGGTGGCGGA AATGAGCACTGGCTGGAGCCCCTCCTGGAAAGGGTGGTGGA < 41bp 1 0.0669520406048379 1 0.11726787686348 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230379152 chr1:230379169 nonsynonymous SNV 0.667 1 38 hm5C_associated_SNPs_45876 0 0 1 0 1 GALNT2 chr1:230379173 5'GT 230379173 Upstream 5bp
chr1 145663174 145663174 1 + G T UCEC 145663167 + 145663147 145663187 41 GGTCTTTACTAGCTTTGGGGCCATTTGGATCACACGATGTT GGTCTTTACTAGCTTTGGGGCCATTTGTATCACACGATGTT < 41bp 1 0.0218647505549447 1 0.0291571617126465 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF115 ENSG00000121848 CDS Human other chr1:145663167 chr1:145663174 nonsynonymous SNV . 0 28 hm5C_associated_SNPs_45878 0 0 1 0 1 RNF115 chr1:145663159 3'AG 145663159 Downstream 16bp
chr1 145663174 145663174 1 + G T UCEC 145663168 + 145663148 145663188 41 GTCTTTACTAGCTTTGGGGCCATTTGGATCACACGATGTTT GTCTTTACTAGCTTTGGGGCCATTTGTATCACACGATGTTT < 41bp 1 0.0296107914315308 1 0.0640210807323456 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF115 ENSG00000121848 CDS Human other chr1:145663168 chr1:145663174 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_45879 0 0 1 0 1 RNF115 chr1:145663159 3'AG 145663159 Downstream 16bp
chr16 90028247 90028247 1 + A G UCEC 90028230 + 90028210 90028250 41 TGGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAA TGGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACGCAA < 41bp 1 0.435097133237966 1 0.246587455272675 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028230 chr16:90028247 nonsynonymous SNV 0.905 0 38 hm5C_associated_SNPs_45880 0 0 1 0 1 DEF8 chr16:90028272 5'GT 90028272 Upstream 26bp
chr16 90028247 90028247 1 + A G UCEC 90028231 + 90028211 90028251 41 GGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAAC GGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACGCAAC < 41bp 1 0.122026839441194 1 0.486598938703537 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028231 chr16:90028247 nonsynonymous SNV 0.905 0 37 hm5C_associated_SNPs_45881 0 0 1 0 1 DEF8 chr16:90028272 5'GT 90028272 Upstream 26bp
chr1 10381845 10381845 1 + G A UCEC 10381855 + 10381835 10381875 41 ACTTCATTACGGGACTTACTCTGGGGCAATGCCGTGTACCT ACTTCATTACAGGACTTACTCTGGGGCAATGCCGTGTACCT < 41bp 1 0.763296300956189 1 0.949921369552612 experiment 0.473407398087622 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10381855 chr1:10381845 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_45883 0 0 1 0 2 KIF1B chr1:10381767 3'AG 10381767 Downstream 79bp
chr1 10381845 10381845 1 + G A UCEC 10381855 + 10381835 10381875 41 ACTTCATTACGGGACTTACTCTGGGGCAATGCCGTGTACCT ACTTCATTACAGGACTTACTCTGGGGCAATGCCGTGTACCT < 41bp 1 0.763296300956189 1 0.949921369552612 experiment 0.473407398087622 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10381855 chr1:10381845 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_45883 0 0 1 0 2 KIF1B chr1:10381915 5'GT 10381915 Upstream 71bp
chr19 34959962 34959962 1 + G A UCEC 34959978 + 34959958 34959998 41 TGACGTTCTCATAGTTGATTCAGATGAAGAAGATTCTTCAA TGACATTCTCATAGTTGATTCAGATGAAGAAGATTCTTCAA < 41bp 1 0.442477231690548 1 0.190346479415894 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBA2 ENSG00000126261 CDS Human protein_coding chr19:34959978 chr19:34959962 nonsynonymous SNV 0.984 1 5 hm5C_associated_SNPs_45884 0 0 1 0 1 UBA2 chr19:34959945 3'AG 34959945 Downstream 18bp
chr19 4960697 4960697 1 + G T UCEC 4960706 + 4960686 4960726 41 TTTCGGGCACAGGTGTTCAGCTGCCCTGCCTGCCGCTACGA TTTCGGGCACATGTGTTCAGCTGCCCTGCCTGCCGCTACGA < 41bp 1 0.327512458205526 1 0.0448226928710938 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4960706 chr19:4960697 . 0.964 0 12 hm5C_associated_SNPs_45885 0 0 0 0 1 UHRF1 chr19:4960668 3'AG 4960668 Downstream 30bp
chr15 72855817 72855817 1 + G A UCEC 72855834 + 72855814 72855854 41 TTCGCTGCAAATGTGGGCGCCAATTTTGGTAAGCAAGTGAT TTCACTGCAAATGTGGGCGCCAATTTTGGTAAGCAAGTGAT < 41bp 1 0.0628106199966617 1 0.125126212835312 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARIH1 ENSG00000166233 CDS Human protein_coding chr15:72855834 chr15:72855817 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_45886 0 0 1 0 2 ARIH1 chr15:72855735 3'AG 72855735 Downstream 83bp
chr15 72855817 72855817 1 + G A UCEC 72855834 + 72855814 72855854 41 TTCGCTGCAAATGTGGGCGCCAATTTTGGTAAGCAAGTGAT TTCACTGCAAATGTGGGCGCCAATTTTGGTAAGCAAGTGAT < 41bp 1 0.0628106199966617 1 0.125126212835312 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARIH1 ENSG00000166233 CDS Human protein_coding chr15:72855834 chr15:72855817 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_45886 0 0 1 0 2 ARIH1 chr15:72855841 5'GT 72855841 Upstream 25bp
chr19 39215146 39215146 1 + C T UCEC 39215157 + 39215137 39215177 41 GAGCACCTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGT GAGCACCTGTGCCGCCAGTTCGCCAGCCAGGCCAATGTTGT < 41bp 1 0.76228766020584 1 0.883025348186493 experiment 0.475424679588319 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215157 chr19:39215146 nonsynonymous SNV 0.998 3 10 hm5C_associated_SNPs_45889 0 0 1 0 2 ACTN4 chr19:39215071 3'AG 39215071 Downstream 76bp
chr19 39215146 39215146 1 + C T UCEC 39215157 + 39215137 39215177 41 GAGCACCTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGT GAGCACCTGTGCCGCCAGTTCGCCAGCCAGGCCAATGTTGT < 41bp 1 0.76228766020584 1 0.883025348186493 experiment 0.475424679588319 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215157 chr19:39215146 nonsynonymous SNV 0.998 3 10 hm5C_associated_SNPs_45889 0 0 1 0 2 ACTN4 chr19:39215205 5'GT 39215205 Upstream 60bp
chr19 39215146 39215146 1 + C T UCEC 39215163 + 39215143 39215183 41 CTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC CTGTGCCGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC < 41bp 1 0.307966762205892 1 0.709546387195587 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215163 chr19:39215146 nonsynonymous SNV 0.998 3 4 hm5C_associated_SNPs_45890 0 0 1 0 2 ACTN4 chr19:39215071 3'AG 39215071 Downstream 76bp
chr19 39215146 39215146 1 + C T UCEC 39215163 + 39215143 39215183 41 CTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC CTGTGCCGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC < 41bp 1 0.307966762205892 1 0.709546387195587 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215163 chr19:39215146 nonsynonymous SNV 0.998 3 4 hm5C_associated_SNPs_45890 0 0 1 0 2 ACTN4 chr19:39215205 5'GT 39215205 Upstream 60bp
chr1 161134340 161134340 1 + G A UCEC 161134359 + 161134339 161134379 41 CGGCAGAAAACTCGAAGTACCAAAAAGTTGACAGTACAAAG CAGCAGAAAACTCGAAGTACCAAAAAGTTGACAGTACAAAG < 41bp 1 0.423318313263539 1 0.414675414562225 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161134359 chr1:161134340 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_45891 0 0 1 0 1 USP21 chr1:161134324 3'AG 161134324 Downstream 17bp
chr1 156105717 156105717 1 + G A UCEC 156105721 + 156105701 156105741 41 AAGGAGGCGAAGCTTCGAGACCTGGAGGACTCACTGGCCCG AAGGAGGCGAAGCTTCAAGACCTGGAGGACTCACTGGCCCG < 41bp 1 0.413259732005415 1 0.460228234529495 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156105721 chr1:156105717 nonsynonymous SNV 0.997 3 17 hm5C_associated_SNPs_45892 0 0 1 0 1 LMNA chr1:156105692 3'AG 156105692 Downstream 26bp
chr1 156105717 156105717 1 + G A UCEC 156105730 + 156105710 156105750 41 AAGCTTCGAGACCTGGAGGACTCACTGGCCCGTGAGCGGGA AAGCTTCAAGACCTGGAGGACTCACTGGCCCGTGAGCGGGA < 41bp 1 0.260562288495845 1 0.164394348859787 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156105730 chr1:156105717 nonsynonymous SNV 0.997 3 8 hm5C_associated_SNPs_45893 0 0 1 0 1 LMNA chr1:156105692 3'AG 156105692 Downstream 26bp
chr3 49568297 49568297 1 + A G UCEC 49568306 + 49568286 49568326 41 CCACACCCTGGAGGGCCTCCCCCTTGACACTGATAAGGGTG CCACACCCTGGGGGGCCTCCCCCTTGACACTGATAAGGGTG < 41bp 1 0.245931512157135 1 0.321514666080475 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DAG1 ENSG00000173402 CDS Human protein_coding chr3:49568306 chr3:49568297 nonsynonymous SNV 0.971 3 12 hm5C_associated_SNPs_45894 0 0 1 0 1 DAG1 chr3:49568230 3'AG 49568230 Downstream 68bp
chr10 51582892 51582892 1 + G A UCEC 51582890 + 51582870 51582910 41 AGCTCCTTACATACCCAGCACCGACCCCCAGGACTGGCTTA AGCTCCTTACATACCCAGCACCAACCCCCAGGACTGGCTTA < 41bp 1 0.0415874043372268 1 0.0394658148288727 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582890 chr10:51582892 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_45895 0 0 1 0 2 NCOA4 chr10:51582796 3'AG 51582796 Downstream 97bp
chr10 51582892 51582892 1 + G A UCEC 51582890 + 51582870 51582910 41 AGCTCCTTACATACCCAGCACCGACCCCCAGGACTGGCTTA AGCTCCTTACATACCCAGCACCAACCCCCAGGACTGGCTTA < 41bp 1 0.0415874043372268 1 0.0394658148288727 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582890 chr10:51582892 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_45895 0 0 1 0 2 NCOA4 chr10:51582939 5'GT 51582939 Upstream 48bp
chr10 51582892 51582892 1 + G A UCEC 51582891 + 51582871 51582911 41 GCTCCTTACATACCCAGCACCGACCCCCAGGACTGGCTTAC GCTCCTTACATACCCAGCACCAACCCCCAGGACTGGCTTAC < 41bp 1 0.170519190390019 1 0.0695391297340393 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582891 chr10:51582892 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_45896 0 0 1 0 2 NCOA4 chr10:51582796 3'AG 51582796 Downstream 97bp
chr10 51582892 51582892 1 + G A UCEC 51582891 + 51582871 51582911 41 GCTCCTTACATACCCAGCACCGACCCCCAGGACTGGCTTAC GCTCCTTACATACCCAGCACCAACCCCCAGGACTGGCTTAC < 41bp 1 0.170519190390019 1 0.0695391297340393 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582891 chr10:51582892 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_45896 0 0 1 0 2 NCOA4 chr10:51582939 5'GT 51582939 Upstream 48bp
chr10 51582892 51582892 1 + G A UCEC 51582895 + 51582875 51582915 41 CTTACATACCCAGCACCGACCCCCAGGACTGGCTTACCCAA CTTACATACCCAGCACCAACCCCCAGGACTGGCTTACCCAA < 41bp 1 0.673848501897225 1 0.317480623722076 experiment 0.652302996205551 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582895 chr10:51582892 nonsynonymous SNV . 0 18 hm5C_associated_SNPs_45897 0 0 1 0 2 NCOA4 chr10:51582796 3'AG 51582796 Downstream 97bp
chr10 51582892 51582892 1 + G A UCEC 51582895 + 51582875 51582915 41 CTTACATACCCAGCACCGACCCCCAGGACTGGCTTACCCAA CTTACATACCCAGCACCAACCCCCAGGACTGGCTTACCCAA < 41bp 1 0.673848501897225 1 0.317480623722076 experiment 0.652302996205551 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582895 chr10:51582892 nonsynonymous SNV . 0 18 hm5C_associated_SNPs_45897 0 0 1 0 2 NCOA4 chr10:51582939 5'GT 51582939 Upstream 48bp
chr9 130107716 130107716 1 + C A UCEC 130107699 + 130107679 130107719 41 AAGGCACTAAAACTGAAATCCATTGTGAGAGGGGATGCTCC AAGGCACTAAAACTGAAATCCATTGTGAGAGGGGATGATCC < 41bp 1 0.0501834017563684 1 0.213299661874771 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GARNL3 ENSG00000136895 CDS Human protein_coding chr9:130107699 chr9:130107716 nonsynonymous SNV 0.996 4 38 hm5C_associated_SNPs_45898 0 0 0 0 2 GARNL3 chr9:130107682 3'AG 130107682 Downstream 35bp
chr9 130107716 130107716 1 + C A UCEC 130107699 + 130107679 130107719 41 AAGGCACTAAAACTGAAATCCATTGTGAGAGGGGATGCTCC AAGGCACTAAAACTGAAATCCATTGTGAGAGGGGATGATCC < 41bp 1 0.0501834017563684 1 0.213299661874771 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GARNL3 ENSG00000136895 CDS Human protein_coding chr9:130107699 chr9:130107716 nonsynonymous SNV 0.996 4 38 hm5C_associated_SNPs_45898 0 0 0 0 2 GARNL3 chr9:130107756 5'GT 130107756 Upstream 41bp
chr13 76415806 76415806 1 + C T UCEC 76415812 + 76415792 76415832 41 TGTCTCTGACCACACGGGAGCCCTCTCTTGCCACCTGGGAA TGTCTCTGACCACATGGGAGCCCTCTCTTGCCACCTGGGAA < 41bp 1 0.0340248796454738 1 0.0412544906139374 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76415812 chr13:76415806 nonsynonymous SNV 0.867 3 15 hm5C_associated_SNPs_45899 0 0 1 0 1 LMO7 chr13:76415764 3'AG 76415764 Downstream 43bp
chr13 76415806 76415806 1 + C T UCEC 76415814 + 76415794 76415834 41 TCTCTGACCACACGGGAGCCCTCTCTTGCCACCTGGGAAGC TCTCTGACCACATGGGAGCCCTCTCTTGCCACCTGGGAAGC < 41bp 1 0.217096279017568 1 0.180630505084991 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76415814 chr13:76415806 nonsynonymous SNV 0.867 3 13 hm5C_associated_SNPs_45900 0 0 1 0 1 LMO7 chr13:76415764 3'AG 76415764 Downstream 43bp
chr18 48604724 48604724 1 + C G UCEC 48604710 + 48604690 48604730 41 TTTTGTGAAAGGCTGGGGACCGGATTACCCAAGACAGAGCA TTTTGTGAAAGGCTGGGGACCGGATTACCCAAGAGAGAGCA < 41bp 1 0.449544642591805 1 0.625366270542145 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48604710 chr18:48604724 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_45901 0 0 1 0 1 SMAD4 chr18:48604626 3'AG 48604626 Downstream 99bp
chr7 44802552 44802552 1 + C T UCEC 44802539 + 44802519 44802559 41 GTCCGCTCGGTGCTGCAGGGCCTCCTCAAAAAGCGCCTCCT GTCCGCTCGGTGCTGCAGGGCCTCCTCAAAAAGTGCCTCCT < 41bp 1 0.0302035923725554 1 0.0332789123058319 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44802539 chr7:44802552 nonsynonymous SNV 0.992 4 34 hm5C_associated_SNPs_45902 0 0 1 0 1 ZMIZ2 chr7:44802480 3'AG 44802480 Downstream 73bp
chr17 30806297 30806297 1 + G A UCEC 30806305 + 30806285 30806325 41 GGGCAGAGCTCCGGGATGACCCAATCATCAGCACACACTTG GGGCAGAGCTCCAGGATGACCCAATCATCAGCACACACTTG < 41bp 1 0.165114892806962 1 0.211541950702667 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30806305 chr17:30806297 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_45903 0 0 1 0 2 PSMD11 chr17:30806269 3'AG 30806269 Downstream 29bp
chr17 30806297 30806297 1 + G A UCEC 30806305 + 30806285 30806325 41 GGGCAGAGCTCCGGGATGACCCAATCATCAGCACACACTTG GGGCAGAGCTCCAGGATGACCCAATCATCAGCACACACTTG < 41bp 1 0.165114892806962 1 0.211541950702667 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30806305 chr17:30806297 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_45903 0 0 1 0 2 PSMD11 chr17:30806394 5'GT 30806394 Upstream 98bp
chr7 91981900 91981900 1 + C T UCEC 91981887 + 91981867 91981907 41 AGGGTCAAATACATCTGGATCTGATACACTCAGCTTCCCAT AGGGTCAAATACATCTGGATCTGATACACTCAGTTTCCCAT < 41bp 1 0.255194399085134 1 0.0437774062156677 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:91981887 chr7:91981900 synonymous SNV . 0 34 hm5C_associated_SNPs_45907 0 0 1 0 1 ANKIB1 chr7:91981956 5'GT 91981956 Upstream 57bp
chr12 51117078 51117078 1 + C T UCEC 51117087 + 51117067 51117107 41 CCTCACGGCCACGCTGCCCACTGTCCGAATGATTGTTGATG CCTCACGGCCATGCTGCCCACTGTCCGAATGATTGTTGATG < 41bp 1 0.0902602636170286 1 0.064265251159668 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51117087 chr12:51117078 nonsynonymous SNV 0.600 4 12 hm5C_associated_SNPs_45908 0 0 1 0 2 DIP2B chr12:51116985 3'AG 51116985 Downstream 94bp
chr12 51117078 51117078 1 + C T UCEC 51117087 + 51117067 51117107 41 CCTCACGGCCACGCTGCCCACTGTCCGAATGATTGTTGATG CCTCACGGCCATGCTGCCCACTGTCCGAATGATTGTTGATG < 41bp 1 0.0902602636170286 1 0.064265251159668 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51117087 chr12:51117078 nonsynonymous SNV 0.600 4 12 hm5C_associated_SNPs_45908 0 0 1 0 2 DIP2B chr12:51117106 5'GT 51117106 Upstream 29bp
chr5 454099 454099 1 + G A UCEC 454080 + 454060 454100 41 ATGTACCACCAAGCCCTGAGCACGCGGATGCAGGACCTCGC ATGTACCACCAAGCCCTGAGCACGCGGATGCAGGACCTCAC < 41bp 1 0.617453911214753 1 0.350242555141449 experiment 0.765092177570494 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC3 ENSG00000180104 CDS Human protein_coding chr5:454080 chr5:454099 nonsynonymous SNV 0.017 1 40 hm5C_associated_SNPs_45909 0 0 1 0 1 EXOC3 chr5:454166 5'GT 454166 Upstream 68bp
chr16 57243050 57243050 1 + G A UCEC 57243043 + 57243023 57243063 41 GAGTTATTCCACTGGAAGATCCACTGGGACCAGCTGTTATA GAGTTATTCCACTGGAAGATCCACTGGAACCAGCTGTTATA < 41bp 1 0.136164988852317 1 0.0704048275947571 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57243043 chr16:57243050 nonsynonymous SNV 0.997 4 28 hm5C_associated_SNPs_45911 0 0 1 0 2 RSPRY1 chr16:57242987 3'AG 57242987 Downstream 64bp
chr16 57243050 57243050 1 + G A UCEC 57243043 + 57243023 57243063 41 GAGTTATTCCACTGGAAGATCCACTGGGACCAGCTGTTATA GAGTTATTCCACTGGAAGATCCACTGGAACCAGCTGTTATA < 41bp 1 0.136164988852317 1 0.0704048275947571 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57243043 chr16:57243050 nonsynonymous SNV 0.997 4 28 hm5C_associated_SNPs_45911 0 0 1 0 2 RSPRY1 chr16:57243099 5'GT 57243099 Upstream 50bp
chr19 42848894 42848894 1 + C T UCEC 42848907 + 42848887 42848927 41 TTCGTCACGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT TTCGTCATGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT < 41bp 1 0.339031760214796 1 0.166937291622162 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42848907 chr19:42848894 nonsynonymous SNV 0.525 3 8 hm5C_associated_SNPs_45912 0 0 1 0 2 MEGF8 chr19:42848822 3'AG 42848822 Downstream 73bp
chr19 42848894 42848894 1 + C T UCEC 42848907 + 42848887 42848927 41 TTCGTCACGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT TTCGTCATGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT < 41bp 1 0.339031760214796 1 0.166937291622162 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42848907 chr19:42848894 nonsynonymous SNV 0.525 3 8 hm5C_associated_SNPs_45912 0 0 1 0 2 MEGF8 chr19:42848985 5'GT 42848985 Upstream 92bp
chr16 67572597 67572597 1 + C T UCEC 67572603 + 67572583 67572623 41 CGGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCG CGGTCTTCAGCCCGTCGGGGCCCCCACGGAAGCCCCCCGCG < 41bp 1 0.0730226004295467 1 0.168044835329056 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572603 chr16:67572597 nonsynonymous SNV 0.955 1 15 hm5C_associated_SNPs_45913 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 35bp
chr16 67572597 67572597 1 + C T UCEC 67572603 + 67572583 67572623 41 CGGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCG CGGTCTTCAGCCCGTCGGGGCCCCCACGGAAGCCCCCCGCG < 41bp 1 0.0730226004295467 1 0.168044835329056 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572603 chr16:67572597 nonsynonymous SNV 0.955 1 15 hm5C_associated_SNPs_45913 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 23bp
chr16 67572597 67572597 1 + C T UCEC 67572604 + 67572584 67572624 41 GGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGC GGTCTTCAGCCCGTCGGGGCCCCCACGGAAGCCCCCCGCGC < 41bp 1 0.533684065172073 1 0.568321168422699 experiment 0.932631869655854 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572604 chr16:67572597 nonsynonymous SNV 0.955 1 14 hm5C_associated_SNPs_45914 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 35bp
chr16 67572597 67572597 1 + C T UCEC 67572604 + 67572584 67572624 41 GGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGC GGTCTTCAGCCCGTCGGGGCCCCCACGGAAGCCCCCCGCGC < 41bp 1 0.533684065172073 1 0.568321168422699 experiment 0.932631869655854 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572604 chr16:67572597 nonsynonymous SNV 0.955 1 14 hm5C_associated_SNPs_45914 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 23bp
chr16 67572597 67572597 1 + C T UCEC 67572605 + 67572585 67572625 41 GTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCT GTCTTCAGCCCGTCGGGGCCCCCACGGAAGCCCCCCGCGCT < 41bp 1 0.149071129613699 1 0.296148896217346 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572605 chr16:67572597 nonsynonymous SNV 0.955 1 13 hm5C_associated_SNPs_45915 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 35bp
chr16 67572597 67572597 1 + C T UCEC 67572605 + 67572585 67572625 41 GTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCT GTCTTCAGCCCGTCGGGGCCCCCACGGAAGCCCCCCGCGCT < 41bp 1 0.149071129613699 1 0.296148896217346 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572605 chr16:67572597 nonsynonymous SNV 0.955 1 13 hm5C_associated_SNPs_45915 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 23bp
chr16 67572597 67572597 1 + C T UCEC 67572606 + 67572586 67572626 41 TCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTC TCTTCAGCCCGTCGGGGCCCCCACGGAAGCCCCCCGCGCTC < 41bp 1 0.439333151584371 1 0.264592796564102 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572606 chr16:67572597 nonsynonymous SNV 0.955 1 12 hm5C_associated_SNPs_45916 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 35bp
chr16 67572597 67572597 1 + C T UCEC 67572606 + 67572586 67572626 41 TCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTC TCTTCAGCCCGTCGGGGCCCCCACGGAAGCCCCCCGCGCTC < 41bp 1 0.439333151584371 1 0.264592796564102 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572606 chr16:67572597 nonsynonymous SNV 0.955 1 12 hm5C_associated_SNPs_45916 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 23bp
chr16 67572597 67572597 1 + C T UCEC 67572607 + 67572587 67572627 41 CTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTCT CTTCAGCCCGTCGGGGCCCCCACGGAAGCCCCCCGCGCTCT < 41bp 1 0.79323925540412 1 0.838846921920776 experiment 0.41352148919176 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572607 chr16:67572597 nonsynonymous SNV 0.955 1 11 hm5C_associated_SNPs_45917 0 0 0 0 2 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 35bp
chr16 67572597 67572597 1 + C T UCEC 67572607 + 67572587 67572627 41 CTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTCT CTTCAGCCCGTCGGGGCCCCCACGGAAGCCCCCCGCGCTCT < 41bp 1 0.79323925540412 1 0.838846921920776 experiment 0.41352148919176 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572607 chr16:67572597 nonsynonymous SNV 0.955 1 11 hm5C_associated_SNPs_45917 0 0 0 0 2 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 23bp
chr6 31914156 31914156 1 + C G UCEC 31914162 + 31914142 31914182 41 CTCTTCAGGTGTGACCACCACTCCATGGTCTTTGGCCCGGC CTCTTCAGGTGTGAGCACCACTCCATGGTCTTTGGCCCGGC < 41bp 1 0.719029152947028 1 0.97831130027771 experiment 0.561941694105943 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control CFB ENSG00000243649;ENSG00000244255 CDS Human other chr6:31914162 chr6:31914156 nonsynonymous SNV 0.144 0 15 hm5C_associated_SNPs_45918 0 0 1 0 1 CFB chr6:31914150 3'AG 31914150 Downstream 7bp
chr12 132546849 132546849 1 + G A UCEC 132546853 + 132546833 132546873 41 CCCCGGCACGGTCTTTGGTGCCCCAAGTGTCCCAAGGTAAA CCCCGGCACGGTCTTTAGTGCCCCAAGTGTCCCAAGGTAAA < 41bp 1 0.148998498890017 1 0.0901011228561401 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546853 chr12:132546849 synonymous SNV . 0 17 hm5C_associated_SNPs_45921 0 0 1 0 1 EP400 chr12:132546868 5'GT 132546868 Upstream 20bp
chr19 50339144 50339144 1 + G A UCEC 50339146 + 50339126 50339166 41 CTCCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAAC CTCCTGGACCCATCCTTCAGCCCCAGAACCCTGGGGCCAAC < 41bp 1 0.461871281646478 1 0.0750053524971008 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339146 chr19:50339144 nonsynonymous SNV 0.998 3 19 hm5C_associated_SNPs_45922 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 59bp
chr19 50339144 50339144 1 + G A UCEC 50339147 + 50339127 50339167 41 TCCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACC TCCTGGACCCATCCTTCAGCCCCAGAACCCTGGGGCCAACC < 41bp 1 0.203189603500984 1 0.043927013874054 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339147 chr19:50339144 nonsynonymous SNV 0.998 3 18 hm5C_associated_SNPs_45923 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 59bp
chr19 50339144 50339144 1 + G A UCEC 50339148 + 50339128 50339168 41 CCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACCC CCTGGACCCATCCTTCAGCCCCAGAACCCTGGGGCCAACCC < 41bp 1 0.468284284513947 1 0.0582012534141541 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339148 chr19:50339144 nonsynonymous SNV 0.998 3 17 hm5C_associated_SNPs_45924 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 59bp
chr19 50339144 50339144 1 + G A UCEC 50339149 + 50339129 50339169 41 CTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACCCT CTGGACCCATCCTTCAGCCCCAGAACCCTGGGGCCAACCCT < 41bp 1 0.421090665764961 1 0.159334570169449 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339149 chr19:50339144 nonsynonymous SNV 0.998 3 16 hm5C_associated_SNPs_45925 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 59bp
chr19 50339144 50339144 1 + G A UCEC 50339162 + 50339142 50339182 41 TCGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCC TCAGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCC < 41bp 1 0.0166909787634916 1 0.0425904989242554 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339162 chr19:50339144 nonsynonymous SNV 0.998 3 3 hm5C_associated_SNPs_45926 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 59bp
chr19 50339144 50339144 1 + G A UCEC 50339163 + 50339143 50339183 41 CGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCCT CAGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCCT < 41bp 1 0.103941110145075 1 0.0541350841522217 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339163 chr19:50339144 nonsynonymous SNV 0.998 3 2 hm5C_associated_SNPs_45927 0 0 1 0 1 MED25 chr19:50339202 5'GT 50339202 Upstream 59bp
chr3 126708568 126708568 1 + C T UCEC 126708579 + 126708559 126708599 41 TCCTGCTACCGTGGTGAGGGCAAGCTCTCCCTGCCGTGGCT TCCTGCTACTGTGGTGAGGGCAAGCTCTCCCTGCCGTGGCT < 41bp 1 0.13353780358216 1 0.375635117292404 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126708579 chr3:126708568 nonsynonymous SNV 0.824 4 10 hm5C_associated_SNPs_45929 0 0 1 0 1 PLXNA1 chr3:126708630 5'GT 126708630 Upstream 63bp
chr14 94568221 94568221 1 + C T UCEC 94568211 + 94568191 94568231 41 CAGTGCCATGGGCTTCACCTCAGTAGGAATCGCCGCATCCT CAGTGCCATGGGCTTCACCTCAGTAGGAATTGCCGCATCCT < 41bp 1 0.76189110922317 1 0.335590660572052 experiment 0.47621778155366 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFI27L1 ENSG00000165948 CDS Human protein_coding chr14:94568211 chr14:94568221 nonsynonymous SNV 0.020 0 31 hm5C_associated_SNPs_45930 0 0 1 0 1 IFI27L1 chr14:94568160 3'AG 94568160 Downstream 62bp
chr11 379647 379647 1 + C T UCEC 379631 + 379611 379651 41 GCCTCCGTGCGCCCCGACGGCCGCCCCGAGCTCTGCCGGCC GCCTCCGTGCGCCCCGACGGCCGCCCCGAGCTCTGCTGGCC < 41bp 1 0.129889446158183 1 0.183403372764587 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:379631 chr11:379647 nonsynonymous SNV 0.825 1 37 hm5C_associated_SNPs_45931 0 0 1 0 1 B4GALNT4 chr11:379701 5'GT 379701 Upstream 55bp
chr1 45973922 45973922 1 + C T UCEC 45973929 + 45973909 45973949 41 TCATTGCTGACTACGAGGTGCACCCCAACCGACGCCCCAAG TCATTGCTGACTATGAGGTGCACCCCAACCGACGCCCCAAG < 41bp 1 0.220836052481315 1 0.0534875094890594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMACHC ENSG00000132763 CDS Human protein_coding chr1:45973929 chr1:45973922 synonymous SNV . 0 14 hm5C_associated_SNPs_45934 0 0 0 0 1 MMACHC chr1:45973884 3'AG 45973884 Downstream 39bp
chr3 123348385 123348385 1 + C T UCEC 123348379 + 123348359 123348399 41 GGCATCGTCGGAGATCTCATCGAATGCCTCGTCGTCGAAGT GGCATCGTCGGAGATCTCATCGAATGTCTCGTCGTCGAAGT < 41bp 1 0.635115157778603 1 0.302568584680557 experiment 0.729769684442794 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYLK ENSG00000065534 CDS Human protein_coding chr3:123348379 chr3:123348385 nonsynonymous SNV 0.945 3 27 hm5C_associated_SNPs_45935 0 0 0 0 1 MYLK chr3:123348341 3'AG 123348341 Downstream 45bp
chr7 32598994 32598994 1 + C T UCEC 32598978 + 32598958 32598998 41 AGAGTCTTCCAATTACTGTACAACCTCAAGCTAATACGGGA AGAGTCTTCCAATTACTGTACAACCTCAAGCTAATATGGGA < 41bp 1 0.130765232705118 1 0.069542795419693 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AVL9 ENSG00000105778 CDS Human protein_coding chr7:32598978 chr7:32598994 nonsynonymous SNV 0.280 1 37 hm5C_associated_SNPs_45936 0 0 1 0 1 AVL9 chr7:32599076 5'GT 32599076 Upstream 83bp
chr11 44129780 44129780 1 + C T UCEC 44129787 + 44129767 44129807 41 GAGACAGCACAAGCGATGGCCCAGCTCTCTAGGTATCTCAC GAGACAGCACAAGTGATGGCCCAGCTCTCTAGGTATCTCAC < 41bp 1 0.0756532147186773 1 0.0932349562644958 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129787 chr11:44129780 nonsynonymous SNV 0.050 2 14 hm5C_associated_SNPs_45937 0 0 1 0 1 EXT2 chr11:44129798 5'GT 44129798 Upstream 19bp
chr7 150765106 150765106 1 + G A UCEC 150765104 + 150765084 150765124 41 CACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCG CACGTGGCCTCCCTCTCCTTCCACAGTCTCCTGGAGCTCCG < 41bp 1 0.439506871911639 1 0.315832167863846 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765104 chr7:150765106 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_45940 0 0 1 0 1 SLC4A2 chr7:150765141 5'GT 150765141 Upstream 36bp
chr7 150765106 150765106 1 + G A UCEC 150765105 + 150765085 150765125 41 ACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCGC ACGTGGCCTCCCTCTCCTTCCACAGTCTCCTGGAGCTCCGC < 41bp 1 0.484552156538929 1 0.368933916091919 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765105 chr7:150765106 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_45941 0 0 1 0 1 SLC4A2 chr7:150765141 5'GT 150765141 Upstream 36bp
chr2 189858172 189858172 1 + C T UCEC 189858166 + 189858146 189858186 41 ACCTGGACCTCAGGGACACGCTGGTGCTCAAGGTCCTCCTG ACCTGGACCTCAGGGACACGCTGGTGTTCAAGGTCCTCCTG < 41bp 1 0.762306557707515 1 0.207752406597137 experiment 0.475386884584969 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189858166 chr2:189858172 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_45942 0 0 0 0 1 COL3A1 chr2:189858185 5'GT 189858185 Upstream 14bp
chr6 31605033 31605033 1 + C T UCEC 31605013 + 31604993 31605033 41 ACGCCCTTCTTCCCTTAGGTCCTTCTCTGGCCTCAATTCCC ACGCCCTTCTTCCCTTAGGTCCTTCTCTGGCCTCAATTCCT < 41bp 1 0.0767515168523938 1 0.0389368832111359 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31605013 chr6:31605033 nonsynonymous SNV 0.994 1 41 hm5C_associated_SNPs_45943 0 0 1 0 2 PRRC2A chr6:31605011 3'AG 31605011 Downstream 23bp
chr6 31605033 31605033 1 + C T UCEC 31605013 + 31604993 31605033 41 ACGCCCTTCTTCCCTTAGGTCCTTCTCTGGCCTCAATTCCC ACGCCCTTCTTCCCTTAGGTCCTTCTCTGGCCTCAATTCCT < 41bp 1 0.0767515168523938 1 0.0389368832111359 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31605013 chr6:31605033 nonsynonymous SNV 0.994 1 41 hm5C_associated_SNPs_45943 0 0 1 0 2 PRRC2A chr6:31605101 5'GT 31605101 Upstream 69bp
chr19 46196137 46196137 1 + C T UCEC 46196120 + 46196100 46196140 41 GCGTTCTACACCATTTGGAGCGGCTGGCACCGCAGGACTGA GCGTTCTACACCATTTGGAGCGGCTGGCACCGCAGGATTGA < 41bp 1 0.460697942262199 1 0.226381301879883 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPCTL ENSG00000011478 CDS Human protein_coding chr19:46196120 chr19:46196137 nonsynonymous SNV 0.839 0 38 hm5C_associated_SNPs_45944 0 0 1 0 1 QPCTL chr19:46196168 5'GT 46196168 Upstream 32bp
chr5 43649326 43649326 1 + G A UCEC 43649344 + 43649324 43649364 41 TGGCTGGCATTGTGGGGTATCATACCGTCTGGGGAGTGACC TGACTGGCATTGTGGGGTATCATACCGTCTGGGGAGTGACC < 41bp 1 0.0839637324601637 1 0.0337048470973969 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43649344 chr5:43649326 nonsynonymous SNV 0.996 3 3 hm5C_associated_SNPs_45945 0 0 1 0 2 NNT chr5:43649249 3'AG 43649249 Downstream 78bp
chr5 43649326 43649326 1 + G A UCEC 43649344 + 43649324 43649364 41 TGGCTGGCATTGTGGGGTATCATACCGTCTGGGGAGTGACC TGACTGGCATTGTGGGGTATCATACCGTCTGGGGAGTGACC < 41bp 1 0.0839637324601637 1 0.0337048470973969 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43649344 chr5:43649326 nonsynonymous SNV 0.996 3 3 hm5C_associated_SNPs_45945 0 0 1 0 2 NNT chr5:43649410 5'GT 43649410 Upstream 85bp
chr11 61719351 61719351 1 + C T UCEC 61719365 + 61719345 61719385 41 TGCTGGCGGGGCAGCATCTACAAGCTGCTATATGGCGAGTT TGCTGGTGGGGCAGCATCTACAAGCTGCTATATGGCGAGTT < 41bp 1 0.528103827787781 1 0.511276662349701 experiment 0.943792344424438 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61719365 chr11:61719351 nonsynonymous SNV 0.992 4 7 hm5C_associated_SNPs_45946 1 0 0 0 1 BEST1 chr11:61719430 5'GT 61719430 Upstream 80bp
chr12 56504368 56504368 1 + C T UCEC 56504375 + 56504355 56504395 41 GGACAGAGAACCACTATTTACAAACGAGACCCCTCTAAACA GGACAGAGAACCATTATTTACAAACGAGACCCCTCTAAACA < 41bp 1 0.309586910758293 1 0.447910130023956 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56504375 chr12:56504368 nonsynonymous SNV 0.999 4 14 hm5C_associated_SNPs_45947 0 0 1 0 1 PA2G4 chr12:56504343 3'AG 56504343 Downstream 26bp
chr1 171763645 171763645 1 + T C UCEC 171763629 + 171763609 171763649 41 CCCAGCATTTGTGGAGCAATCTTTTCTACAGAAGGTTAAAA CCCAGCATTTGTGGAGCAATCTTTTCTACAGAAGGTCAAAA < 41bp 1 0.176102036334831 1 0.0640592277050018 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171763629 chr1:171763645 synonymous SNV . 0 37 hm5C_associated_SNPs_45948 0 0 1 0 1 METTL13 chr1:171763667 5'GT 171763667 Upstream 23bp
chr12 57599004 57599004 1 + C T UCEC 57599013 + 57598993 57599033 41 GACTGCGGGGACGGCTCTGACGAGGAGGACTGCAGCATCGG GACTGCGGGGATGGCTCTGACGAGGAGGACTGCAGCATCGG < 41bp 1 0.461116240826061 1 0.930318117141724 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599013 chr12:57599004 synonymous SNV . 0 12 hm5C_associated_SNPs_45949 0 0 0 0 1 LRP1 chr12:57599032 5'GT 57599032 Upstream 29bp
chr19 6177345 6177345 1 + G T UCEC 6177336 + 6177316 6177356 41 CACTCAGCCATATTGCAGCACAGATGATGGACATCTGGGTA CACTCAGCCATATTGCAGCACAGATGATGTACATCTGGGTA < 41bp 1 0.372579063672195 1 0.0778681933879852 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ACSBG2 ENSG00000130377 CDS Human protein_coding chr19:6177336 chr19:6177345 nonsynonymous SNV 0.727 2 30 hm5C_associated_SNPs_45950 0 0 0 0 1 ACSBG2 chr19:6177407 5'GT 6177407 Upstream 63bp
chr19 30313229 30313229 1 + C T UCEC 30313222 + 30313202 30313242 41 TTGCTGCTTCGGCCTTGTATCATTTCTCGTCATCTGAATTG TTGCTGCTTCGGCCTTGTATCATTTCTTGTCATCTGAATTG < 41bp 1 0.0796183153197336 1 0.156813830137253 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30313222 chr19:30313229 nonsynonymous SNV 0.947 3 28 hm5C_associated_SNPs_45951 0 0 0 0 2 CCNE1 chr19:30313147 3'AG 30313147 Downstream 83bp
chr19 30313229 30313229 1 + C T UCEC 30313222 + 30313202 30313242 41 TTGCTGCTTCGGCCTTGTATCATTTCTCGTCATCTGAATTG TTGCTGCTTCGGCCTTGTATCATTTCTTGTCATCTGAATTG < 41bp 1 0.0796183153197336 1 0.156813830137253 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30313222 chr19:30313229 nonsynonymous SNV 0.947 3 28 hm5C_associated_SNPs_45951 0 0 0 0 2 CCNE1 chr19:30313258 5'GT 30313258 Upstream 30bp
chr7 77539623 77539623 1 + G T UCEC 77539642 + 77539622 77539662 41 AGATAACACACAAGAGGGAGCAGTTCAGAACCACGGTACAA ATATAACACACAAGAGGGAGCAGTTCAGAACCACGGTACAA < 41bp 1 0.240472960156849 1 0.228506565093994 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHTF2 ENSG00000006576 CDS Human protein_coding chr7:77539642 chr7:77539623 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_45957 0 0 1 0 1 PHTF2 chr7:77539562 3'AG 77539562 Downstream 62bp
chr3 62229564 62229564 1 + C A UCEC 62229569 + 62229549 62229589 41 GTATCCCTATTATTCCTATTCCGGGTAAGTAAGACACTGCT GTATCCCTATTATTCATATTCCGGGTAAGTAAGACACTGCT < 41bp 1 0.228017504417369 1 0.874078333377838 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:62229569 chr3:62229564 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_45959 0 0 1 0 2 PTPRG chr3:62229481 3'AG 62229481 Downstream 84bp
chr3 62229564 62229564 1 + C A UCEC 62229569 + 62229549 62229589 41 GTATCCCTATTATTCCTATTCCGGGTAAGTAAGACACTGCT GTATCCCTATTATTCATATTCCGGGTAAGTAAGACACTGCT < 41bp 1 0.228017504417369 1 0.874078333377838 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:62229569 chr3:62229564 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_45959 0 0 1 0 2 PTPRG chr3:62229572 5'GT 62229572 Upstream 9bp
chr1 230384969 230384969 1 + C T UCEC 230384971 + 230384951 230384991 41 TCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCCGG TCAAGTGGGATTACATGATGCCTGAGCAGAGAAGGTCCCGG < 41bp 1 0.274878662647843 1 0.0750665366649628 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384971 chr1:230384969 nonsynonymous SNV 0.990 3 19 hm5C_associated_SNPs_45960 0 0 1 0 2 GALNT2 chr1:230384930 3'AG 230384930 Downstream 40bp
chr1 230384969 230384969 1 + C T UCEC 230384971 + 230384951 230384991 41 TCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCCGG TCAAGTGGGATTACATGATGCCTGAGCAGAGAAGGTCCCGG < 41bp 1 0.274878662647843 1 0.0750665366649628 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384971 chr1:230384969 nonsynonymous SNV 0.990 3 19 hm5C_associated_SNPs_45960 0 0 1 0 2 GALNT2 chr1:230385017 5'GT 230385017 Upstream 49bp
chr4 88967974 88967974 1 + A G UCEC 88967960 + 88967940 88967980 41 TGGAAGAGATATTGGAAATTCGCATTCACAAACTACACTAT TGGAAGAGATATTGGAAATTCGCATTCACAAACTGCACTAT < 41bp 1 0.353477375546737 1 0.499312996864319 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKD2 ENSG00000118762 CDS Human protein_coding chr4:88967960 chr4:88967974 synonymous SNV . 0 35 hm5C_associated_SNPs_45961 0 0 1 0 1 PKD2 chr4:88968022 5'GT 88968022 Upstream 49bp
chr3 16312547 16312547 1 + C T UCEC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACATTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.239999763104094 1 0.143780559301376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312547 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_45962 0 0 0 19 2 OXNAD1 chr3:16312452 3'AG 16312452 Downstream 96bp
chr3 16312547 16312547 1 + C T UCEC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACATTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.239999763104094 1 0.143780559301376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312547 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_45962 0 0 0 19 2 OXNAD1 chr3:16312578 5'GT 16312578 Upstream 32bp
chr1 145440779 145440779 1 + A G UCEC 145440782 + 145440762 145440802 41 ATCTGAACATCCCTGATACCCCAGAAGGTGAGCCAGACCTA ATCTGAACATCCCTGATGCCCCAGAAGGTGAGCCAGACCTA < 41bp 1 0.252815201493506 1 0.28320649266243 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TXNIP ENSG00000117289 CDS Human other chr1:145440782 chr1:145440779 nonsynonymous SNV . 0 18 hm5C_associated_SNPs_45963 0 0 1 0 1 TXNIP chr1:145440788 5'GT 145440788 Upstream 10bp
chr1 145440779 145440779 1 + A G UCEC 145440783 + 145440763 145440803 41 TCTGAACATCCCTGATACCCCAGAAGGTGAGCCAGACCTAA TCTGAACATCCCTGATGCCCCAGAAGGTGAGCCAGACCTAA < 41bp 1 0.325967426316003 1 0.487674474716187 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TXNIP ENSG00000117289 CDS Human other chr1:145440783 chr1:145440779 nonsynonymous SNV . 0 17 hm5C_associated_SNPs_45964 0 0 1 0 1 TXNIP chr1:145440788 5'GT 145440788 Upstream 10bp
chr16 22328487 22328487 1 + G A UCEC 22328499 + 22328479 22328519 41 CTGCGCACGCTGCCCCTGGCCGATCAGATCAAGATCCTGAT CTGCGCACACTGCCCCTGGCCGATCAGATCAAGATCCTGAT < 41bp 1 0.143816299634723 1 0.0499754846096039 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22328499 chr16:22328487 synonymous SNV . 0 9 hm5C_associated_SNPs_45965 0 0 1 0 2 POLR3E chr16:22328436 3'AG 22328436 Downstream 52bp
chr16 22328487 22328487 1 + G A UCEC 22328499 + 22328479 22328519 41 CTGCGCACGCTGCCCCTGGCCGATCAGATCAAGATCCTGAT CTGCGCACACTGCCCCTGGCCGATCAGATCAAGATCCTGAT < 41bp 1 0.143816299634723 1 0.0499754846096039 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22328499 chr16:22328487 synonymous SNV . 0 9 hm5C_associated_SNPs_45965 0 0 1 0 2 POLR3E chr16:22328527 5'GT 22328527 Upstream 41bp
chr3 52245362 52245362 1 + G A UCEC 52245356 + 52245336 52245376 41 CACGAGTTCTCTGATTGACACCGTACGGTCCTATGCTGCTG CACGAGTTCTCTGATTGACACCGTACAGTCCTATGCTGCTG < 41bp 1 0.404875563181378 1 0.270872950553894 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245356 chr3:52245362 nonsynonymous SNV 0.024 5 27 hm5C_associated_SNPs_45966 0 0 1 0 1 ALAS1 chr3:52245299 3'AG 52245299 Downstream 64bp
chr3 52245362 52245362 1 + G A UCEC 52245357 + 52245337 52245377 41 ACGAGTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGG ACGAGTTCTCTGATTGACACCGTACAGTCCTATGCTGCTGG < 41bp 1 0.119278945110914 1 0.252921044826508 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245357 chr3:52245362 nonsynonymous SNV 0.024 5 26 hm5C_associated_SNPs_45967 0 0 1 0 1 ALAS1 chr3:52245299 3'AG 52245299 Downstream 64bp
chr3 52245362 52245362 1 + G A UCEC 52245361 + 52245341 52245381 41 GTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGGCTTC GTTCTCTGATTGACACCGTACAGTCCTATGCTGCTGGCTTC < 41bp 1 0.267676289389027 1 0.203156560659409 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245361 chr3:52245362 nonsynonymous SNV 0.024 5 22 hm5C_associated_SNPs_45968 0 0 1 0 1 ALAS1 chr3:52245299 3'AG 52245299 Downstream 64bp
chr22 41923391 41923391 1 + G A UCEC 41923388 + 41923368 41923408 41 AGCCTCGCCACCTTGGGGGCCGGGCCATCATCACCAAGAGC AGCCTCGCCACCTTGGGGGCCGGACCATCATCACCAAGAGC < 41bp 1 0.110519523054057 1 0.298592925071716 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41923388 chr22:41923391 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_45970 0 0 1 0 2 ACO2 chr22:41923292 3'AG 41923292 Downstream 100bp
chr22 41923391 41923391 1 + G A UCEC 41923388 + 41923368 41923408 41 AGCCTCGCCACCTTGGGGGCCGGGCCATCATCACCAAGAGC AGCCTCGCCACCTTGGGGGCCGGACCATCATCACCAAGAGC < 41bp 1 0.110519523054057 1 0.298592925071716 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41923388 chr22:41923391 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_45970 0 0 1 0 2 ACO2 chr22:41923424 5'GT 41923424 Upstream 34bp
chr2 138762729 138762729 1 + G T UCEC 138762727 + 138762707 138762747 41 GTATTATGTAAAAGACATCCCAGCTACCCTGAAATTCTTCC GTATTATGTAAAAGACATCCCATCTACCCTGAAATTCTTCC < 41bp 1 0.0881755536447166 1 0.137805610895157 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HNMT ENSG00000150540 CDS Human protein_coding chr2:138762727 chr2:138762729 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_45971 0 0 1 0 2 HNMT chr2:138762702 3'AG 138762702 Downstream 28bp
chr2 138762729 138762729 1 + G T UCEC 138762727 + 138762707 138762747 41 GTATTATGTAAAAGACATCCCAGCTACCCTGAAATTCTTCC GTATTATGTAAAAGACATCCCATCTACCCTGAAATTCTTCC < 41bp 1 0.0881755536447166 1 0.137805610895157 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HNMT ENSG00000150540 CDS Human protein_coding chr2:138762727 chr2:138762729 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_45971 0 0 1 0 2 HNMT chr2:138762795 5'GT 138762795 Upstream 67bp
chr7 6634149 6634149 1 + G A UCEC 6634139 + 6634119 6634159 41 CTGCTGTTTGGTGCCGGGATCCATTCAGACGCTGAAGCAGA CTGCTGTTTGGTGCCGGGATCCATTCAGACACTGAAGCAGA < 41bp 1 0.0479007506088255 1 0.406984120607376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6634139 chr7:6634149 synonymous SNV . 0 31 hm5C_associated_SNPs_45973 0 0 1 0 2 C7orf26 chr7:6634066 3'AG 6634066 Downstream 84bp
chr7 6634149 6634149 1 + G A UCEC 6634139 + 6634119 6634159 41 CTGCTGTTTGGTGCCGGGATCCATTCAGACGCTGAAGCAGA CTGCTGTTTGGTGCCGGGATCCATTCAGACACTGAAGCAGA < 41bp 1 0.0479007506088255 1 0.406984120607376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6634139 chr7:6634149 synonymous SNV . 0 31 hm5C_associated_SNPs_45973 0 0 1 0 2 C7orf26 chr7:6634231 5'GT 6634231 Upstream 83bp
chr1 182848501 182848501 1 + C T UCEC 182848482 + 182848462 182848502 41 TAGGAGGAATTGGCCAATTTCTGGCCAAAGCAATTGAACCT TAGGAGGAATTGGCCAATTTCTGGCCAAAGCAATTGAACTT < 41bp 1 0.747090939489002 1 0.775747537612915 experiment 0.505818121021996 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182848482 chr1:182848501 nonsynonymous SNV 0.999 4 40 hm5C_associated_SNPs_45974 0 0 1 0 1 DHX9 chr1:182848545 5'GT 182848545 Upstream 45bp
chr7 141341096 141341096 1 + G T UCEC 141341103 + 141341083 141341123 41 CACGGGACCTACAGAGAGACCTCCCAATGAACCAGAGGAGA CACGGGACCTACATAGAGACCTCCCAATGAACCAGAGGAGA < 41bp 1 0.273693577765836 1 0.0585985779762268 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGK ENSG00000006530 CDS Human protein_coding chr7:141341103 chr7:141341096 stopgain 1.000 1 14 hm5C_associated_SNPs_45977 0 0 1 0 1 AGK chr7:141341048 3'AG 141341048 Downstream 49bp
chr3 195398092 195398092 1 + C T UCEC 195398099 + 195398079 195398119 41 AAGGTTTATGGAGCGATACGCCCCCATCGCGAAGGACCTGG AAGGTTTATGGAGTGATACGCCCCCATCGCGAAGGACCTGG < 41bp 1 0.150528439694075 1 0.0354055166244507 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195398099 chr3:195398092 . . 0 14 hm5C_associated_SNPs_45979 0 0 0 1 2 SDHAP2 chr3:195398003 3'AG 195398003 Downstream 90bp
chr3 195398092 195398092 1 + C T UCEC 195398099 + 195398079 195398119 41 AAGGTTTATGGAGCGATACGCCCCCATCGCGAAGGACCTGG AAGGTTTATGGAGTGATACGCCCCCATCGCGAAGGACCTGG < 41bp 1 0.150528439694075 1 0.0354055166244507 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195398099 chr3:195398092 . . 0 14 hm5C_associated_SNPs_45979 0 0 0 1 2 SDHAP2 chr3:195398171 5'GT 195398171 Upstream 80bp
chr6 130381237 130381237 1 + C T UCEC 130381222 + 130381202 130381242 41 AAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGCGTGGA AAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGTGTGGA < 41bp 1 0.434071503716678 1 0.273564338684082 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130381222 chr6:130381237 synonymous SNV . 0 36 hm5C_associated_SNPs_45980 0 0 1 0 2 L3MBTL3 chr6:130381181 3'AG 130381181 Downstream 57bp
chr6 130381237 130381237 1 + C T UCEC 130381222 + 130381202 130381242 41 AAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGCGTGGA AAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGTGTGGA < 41bp 1 0.434071503716678 1 0.273564338684082 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130381222 chr6:130381237 synonymous SNV . 0 36 hm5C_associated_SNPs_45980 0 0 1 0 2 L3MBTL3 chr6:130381285 5'GT 130381285 Upstream 49bp
chr15 74325012 74325012 1 + G A UCEC 74325006 + 74324986 74325026 41 TACAGTCAGTGCCCGGGGCACACCCCGTGCCAGTGTACGCC TACAGTCAGTGCCCGGGGCACACCCCATGCCAGTGTACGCC < 41bp 1 0.316015971661785 1 0.0598049163818359 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74325006 chr15:74325012 nonsynonymous SNV 0.007 0 27 hm5C_associated_SNPs_45981 0 0 0 0 3 PML chr15:74324913 3'AG 74324913 Downstream 100bp
chr15 74325012 74325012 1 + G A UCEC 74325006 + 74324986 74325026 41 TACAGTCAGTGCCCGGGGCACACCCCGTGCCAGTGTACGCC TACAGTCAGTGCCCGGGGCACACCCCATGCCAGTGTACGCC < 41bp 1 0.316015971661785 1 0.0598049163818359 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74325006 chr15:74325012 nonsynonymous SNV 0.007 0 27 hm5C_associated_SNPs_45981 0 0 0 0 3 PML chr15:74324968 3'AG 74324968 Downstream 45bp
chr15 74325012 74325012 1 + G A UCEC 74325006 + 74324986 74325026 41 TACAGTCAGTGCCCGGGGCACACCCCGTGCCAGTGTACGCC TACAGTCAGTGCCCGGGGCACACCCCATGCCAGTGTACGCC < 41bp 1 0.316015971661785 1 0.0598049163818359 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74325006 chr15:74325012 nonsynonymous SNV 0.007 0 27 hm5C_associated_SNPs_45981 0 0 0 0 3 PML chr15:74325056 5'GT 74325056 Upstream 45bp
chr12 52635387 52635387 1 + C T UCEC 52635378 + 52635358 52635398 41 GCGCAGTATGAGGAGATGGCCAAATGCAGCCGGGCTGAGGC GCGCAGTATGAGGAGATGGCCAAATGCAGTCGGGCTGAGGC < 41bp 1 0.322566420398884 1 0.68374490737915 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52635378 chr12:52635387 synonymous SNV . 0 30 hm5C_associated_SNPs_45983 0 0 0 0 1 KRT7 chr12:52635420 5'GT 52635420 Upstream 34bp
chr16 19580893 19580893 1 + G A UCEC 19580890 + 19580870 19580910 41 TGTTTGCAGCCACTGCTGACCCCGCAGCCTTGGCAGCTGCC TGTTTGCAGCCACTGCTGACCCCACAGCCTTGGCAGCTGCC < 41bp 1 0.122584040219979 1 0.312316954135895 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19580890 chr16:19580893 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_45985 0 0 0 0 1 C16orf62 chr16:19580913 5'GT 19580913 Upstream 21bp
chr19 10897280 10897280 1 + G A UCEC 10897279 + 10897259 10897299 41 GGGAGTCGCTGCCGGCCCTACGTAGCAAACTACAGAGCCAG GGGAGTCGCTGCCGGCCCTACATAGCAAACTACAGAGCCAG < 41bp 1 0.165719331063334 1 0.121634185314178 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10897279 chr19:10897280 nonsynonymous SNV 0.556 4 22 hm5C_associated_SNPs_45986 2 0 1 0 1 DNM2 chr19:10897240 3'AG 10897240 Downstream 41bp
chr11 4142935 4142935 1 + A G UCEC 4142924 + 4142904 4142944 41 AGAACACAGGAAAGGAAGAGCAGCGTGCCAGAGATCTTTTC AGAACACAGGAAAGGAAGAGCAGCGTGCCAGGGATCTTTTC < 41bp 1 0.615572258756493 1 0.718154668807983 experiment 0.768855482487013 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RRM1 ENSG00000167325 CDS Human protein_coding chr11:4142924 chr11:4142935 synonymous SNV . 0 32 hm5C_associated_SNPs_45987 0 0 1 0 1 RRM1 chr11:4142995 5'GT 4142995 Upstream 61bp
chr8 110569182 110569182 1 + G T UCEC 110569185 + 110569165 110569205 41 TTGTTATTAAGAAGAGAGAACCATTGAATTTTGGCATCCCA TTGTTATTAAGAAGAGATAACCATTGAATTTTGGCATCCCA < 41bp 1 0.0520228718304331 1 0.119010508060455 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110569185 chr8:110569182 stopgain 1.000 1 18 hm5C_associated_SNPs_45988 0 0 1 0 2 EBAG9 chr8:110569164 3'AG 110569164 Downstream 19bp
chr8 110569182 110569182 1 + G T UCEC 110569185 + 110569165 110569205 41 TTGTTATTAAGAAGAGAGAACCATTGAATTTTGGCATCCCA TTGTTATTAAGAAGAGATAACCATTGAATTTTGGCATCCCA < 41bp 1 0.0520228718304331 1 0.119010508060455 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110569185 chr8:110569182 stopgain 1.000 1 18 hm5C_associated_SNPs_45988 0 0 1 0 2 EBAG9 chr8:110569271 5'GT 110569271 Upstream 90bp
chr1 46070645 46070645 1 + G A UCEC 46070650 + 46070630 46070670 41 GCTAATGAGTGTGGAGAAGCCTTCTTTTTCTATGGGAAATC GCTAATGAGTGTGGAAAAGCCTTCTTTTTCTATGGGAAATC < 41bp 1 0.255824422289339 1 0.0554491579532623 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NASP ENSG00000132780 CDS Human protein_coding chr1:46070650 chr1:46070645 nonsynonymous SNV 1.000 5 16 hm5C_associated_SNPs_45989 0 0 1 0 2 NASP chr1:46070608 3'AG 46070608 Downstream 38bp
chr1 46070645 46070645 1 + G A UCEC 46070650 + 46070630 46070670 41 GCTAATGAGTGTGGAGAAGCCTTCTTTTTCTATGGGAAATC GCTAATGAGTGTGGAAAAGCCTTCTTTTTCTATGGGAAATC < 41bp 1 0.255824422289339 1 0.0554491579532623 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NASP ENSG00000132780 CDS Human protein_coding chr1:46070650 chr1:46070645 nonsynonymous SNV 1.000 5 16 hm5C_associated_SNPs_45989 0 0 1 0 2 NASP chr1:46070688 5'GT 46070688 Upstream 44bp
chrX 68059898 68059898 1 + C T UCEC 68059888 + 68059868 68059908 41 GTCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT GTCAAGATGGCCACACAGGCCCCTGGTAGTTGGGGCTCCCT < 41bp 1 0.143160515046453 1 0.0925588011741638 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059888 chrX:68059898 nonsynonymous SNV 0.493 3 31 hm5C_associated_SNPs_45990 0 0 0 0 2 EFNB1 chrX:68059803 3'AG 68059803 Downstream 96bp
chrX 68059898 68059898 1 + C T UCEC 68059888 + 68059868 68059908 41 GTCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT GTCAAGATGGCCACACAGGCCCCTGGTAGTTGGGGCTCCCT < 41bp 1 0.143160515046453 1 0.0925588011741638 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059888 chrX:68059898 nonsynonymous SNV 0.493 3 31 hm5C_associated_SNPs_45990 0 0 0 0 2 EFNB1 chrX:68059931 5'GT 68059931 Upstream 34bp
chr2 73681187 73681187 1 + A G UCEC 73681178 + 73681158 73681198 41 AATGCAGAGGAAGAGGAAAGCCGGGTACGAGCACATGGTAA AATGCAGAGGAAGAGGAAAGCCGGGTACGGGCACATGGTAA < 41bp 1 0.292947485744216 1 0.829263925552368 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ALMS1 ENSG00000116127 CDS Human protein_coding chr2:73681178 chr2:73681187 synonymous SNV . 0 30 hm5C_associated_SNPs_45996 0 0 0 0 1 ALMS1 chr2:73681194 5'GT 73681194 Upstream 8bp
chr6 52943654 52943654 1 + C A UCEC 52943668 + 52943648 52943688 41 AGATTACTTATACCCGGTCTCCAGATGGTGATGGCGTTGGA AGATTAATTATACCCGGTCTCCAGATGGTGATGGCGTTGGA < 41bp 1 0.664918417081145 1 0.736110687255859 experiment 0.67016316583771 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXO9 ENSG00000112146 CDS Human protein_coding chr6:52943668 chr6:52943654 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_45997 0 0 1 0 2 FBXO9 chr6:52943597 3'AG 52943597 Downstream 58bp
chr6 52943654 52943654 1 + C A UCEC 52943668 + 52943648 52943688 41 AGATTACTTATACCCGGTCTCCAGATGGTGATGGCGTTGGA AGATTAATTATACCCGGTCTCCAGATGGTGATGGCGTTGGA < 41bp 1 0.664918417081145 1 0.736110687255859 experiment 0.67016316583771 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXO9 ENSG00000112146 CDS Human protein_coding chr6:52943668 chr6:52943654 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_45997 0 0 1 0 2 FBXO9 chr6:52943696 5'GT 52943696 Upstream 43bp
chr2 46609713 46609713 1 + C A UCEC 46609709 + 46609689 46609729 41 GCCACCCAGTACCAGGACTACAGCCTGTCGTCAGCCCACAA GCCACCCAGTACCAGGACTACAGCATGTCGTCAGCCCACAA < 41bp 1 0.776521956334661 1 0.265635430812836 experiment 0.446956087330677 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46609709 chr2:46609713 nonsynonymous SNV 0.257 0 25 hm5C_associated_SNPs_45998 0 0 1 0 1 EPAS1 chr2:46609737 5'GT 46609737 Upstream 25bp
chr2 216977763 216977763 1 + G A UCEC 216977783 + 216977763 216977803 41 GTGGGCTTTACCATGAGTAACTCCATTCCTGGTATAGAATC ATGGGCTTTACCATGAGTAACTCCATTCCTGGTATAGAATC < 41bp 1 0.70650023965812 1 0.80434238910675 experiment 0.586999520683761 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control XRCC5 ENSG00000079246 CDS Human protein_coding chr2:216977783 chr2:216977763 nonsynonymous SNV 0.998 4 1 hm5C_associated_SNPs_45999 0 0 1 0 2 XRCC5 chr2:216977739 3'AG 216977739 Downstream 25bp
chr2 216977763 216977763 1 + G A UCEC 216977783 + 216977763 216977803 41 GTGGGCTTTACCATGAGTAACTCCATTCCTGGTATAGAATC ATGGGCTTTACCATGAGTAACTCCATTCCTGGTATAGAATC < 41bp 1 0.70650023965812 1 0.80434238910675 experiment 0.586999520683761 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control XRCC5 ENSG00000079246 CDS Human protein_coding chr2:216977783 chr2:216977763 nonsynonymous SNV 0.998 4 1 hm5C_associated_SNPs_45999 0 0 1 0 2 XRCC5 chr2:216977852 5'GT 216977852 Upstream 90bp
chr14 37754606 37754606 1 + G T UCEC 37754619 + 37754599 37754639 41 GGAGAGAGATGAAGCAATTGCACGAGCCAAGCATATGGAAA GGAGAGATATGAAGCAATTGCACGAGCCAAGCATATGGAAA < 41bp 1 0.490059943714095 1 0.54093474149704 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MIPOL1 ENSG00000151338 CDS Human protein_coding chr14:37754619 chr14:37754606 nonsynonymous SNV 0.997 4 8 hm5C_associated_SNPs_46000 0 0 1 0 1 MIPOL1 chr14:37754523 3'AG 37754523 Downstream 84bp
chr11 63719959 63719959 1 + C T UCEC 63719969 + 63719949 63719989 41 TACCTCATCGCGTGGGAAAACAGCTCCGTCCCTGTTGCCTT TACCTCATCGTGTGGGAAAACAGCTCCGTCCCTGTTGCCTT < 41bp 1 0.655708487885928 1 0.609795808792114 experiment 0.688583024228143 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAA40 ENSG00000110583 CDS Human protein_coding chr11:63719969 chr11:63719959 nonsynonymous SNV 0.978 3 11 hm5C_associated_SNPs_46001 0 0 1 0 2 NAA40 chr11:63719879 3'AG 63719879 Downstream 81bp
chr11 63719959 63719959 1 + C T UCEC 63719969 + 63719949 63719989 41 TACCTCATCGCGTGGGAAAACAGCTCCGTCCCTGTTGCCTT TACCTCATCGTGTGGGAAAACAGCTCCGTCCCTGTTGCCTT < 41bp 1 0.655708487885928 1 0.609795808792114 experiment 0.688583024228143 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAA40 ENSG00000110583 CDS Human protein_coding chr11:63719969 chr11:63719959 nonsynonymous SNV 0.978 3 11 hm5C_associated_SNPs_46001 0 0 1 0 2 NAA40 chr11:63720037 5'GT 63720037 Upstream 79bp
chr16 5127933 5127933 1 + G A UCEC 5127916 + 5127896 5127936 41 ATTTCATTGCAGGGCTGTGACCGTCTACGACAAGCCCGCAT ATTTCATTGCAGGGCTGTGACCGTCTACGACAAGCCCACAT < 41bp 1 0.165848258435223 1 0.20905864238739 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5127916 chr16:5127933 nonsynonymous SNV 0.662 2 38 hm5C_associated_SNPs_46002 0 0 1 0 2 ALG1 chr16:5127908 3'AG 5127908 Downstream 26bp
chr16 5127933 5127933 1 + G A UCEC 5127916 + 5127896 5127936 41 ATTTCATTGCAGGGCTGTGACCGTCTACGACAAGCCCGCAT ATTTCATTGCAGGGCTGTGACCGTCTACGACAAGCCCACAT < 41bp 1 0.165848258435223 1 0.20905864238739 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5127916 chr16:5127933 nonsynonymous SNV 0.662 2 38 hm5C_associated_SNPs_46002 0 0 1 0 2 ALG1 chr16:5128018 5'GT 5128018 Upstream 86bp
chr20 57484814 57484814 1 + G A UCEC 57484828 + 57484808 57484848 41 CCAACCGCCTGCAGGAGGCTCTGAACCTCTTCAAGAGCATC CCAACCACCTGCAGGAGGCTCTGAACCTCTTCAAGAGCATC < 41bp 1 0.398310773992574 1 0.155091255903244 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNAS ENSG00000087460 CDS Human protein_coding chr20:57484828 chr20:57484814 nonsynonymous SNV 1.000 5 7 hm5C_associated_SNPs_46006 0 0 1 0 2 GNAS chr20:57484739 3'AG 57484739 Downstream 76bp
chr20 57484814 57484814 1 + G A UCEC 57484828 + 57484808 57484848 41 CCAACCGCCTGCAGGAGGCTCTGAACCTCTTCAAGAGCATC CCAACCACCTGCAGGAGGCTCTGAACCTCTTCAAGAGCATC < 41bp 1 0.398310773992574 1 0.155091255903244 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNAS ENSG00000087460 CDS Human protein_coding chr20:57484828 chr20:57484814 nonsynonymous SNV 1.000 5 7 hm5C_associated_SNPs_46006 0 0 1 0 2 GNAS chr20:57484859 5'GT 57484859 Upstream 46bp
chr17 4859438 4859438 1 + C T UCEC 4859423 + 4859403 4859443 41 CAACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAG CAACCAGATCGGCTCGGTGACCGAATCGATCCAGGTGTGAG < 41bp 1 0.473279365277952 1 0.13961735367775 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859423 chr17:4859438 nonsynonymous SNV 0.999 3 36 hm5C_associated_SNPs_46008 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 77bp
chr17 4859438 4859438 1 + C T UCEC 4859423 + 4859403 4859443 41 CAACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAG CAACCAGATCGGCTCGGTGACCGAATCGATCCAGGTGTGAG < 41bp 1 0.473279365277952 1 0.13961735367775 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859423 chr17:4859438 nonsynonymous SNV 0.999 3 36 hm5C_associated_SNPs_46008 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 1bp
chr17 4859438 4859438 1 + C T UCEC 4859424 + 4859404 4859444 41 AACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAGT AACCAGATCGGCTCGGTGACCGAATCGATCCAGGTGTGAGT < 41bp 1 0.374634489993058 1 0.475293844938278 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859424 chr17:4859438 nonsynonymous SNV 0.999 3 35 hm5C_associated_SNPs_46009 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 77bp
chr17 4859438 4859438 1 + C T UCEC 4859424 + 4859404 4859444 41 AACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAGT AACCAGATCGGCTCGGTGACCGAATCGATCCAGGTGTGAGT < 41bp 1 0.374634489993058 1 0.475293844938278 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859424 chr17:4859438 nonsynonymous SNV 0.999 3 35 hm5C_associated_SNPs_46009 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 1bp
chr11 118949983 118949983 1 + G A UCEC 118949993 + 118949973 118950013 41 ACCCGTATCCGCCAGGAGATCCAAGAGCTCAAGGCCAGGTA ACCCGTATCCACCAGGAGATCCAAGAGCTCAAGGCCAGGTA < 41bp 1 0.434614555010458 1 0.221472471952438 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VPS11 ENSG00000160695 CDS Human protein_coding chr11:118949993 chr11:118949983 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_46010 0 0 0 0 1 VPS11 chr11:118950010 5'GT 118950010 Upstream 28bp
chr19 39948351 39948351 1 + A G UCEC 39948343 + 39948323 39948363 41 GATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA GATGAGTATGAGGACGAGGACCAGTGGGGGGATGGAGCAGA < 41bp 1 0.295151420310367 1 0.153096437454224 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948343 chr19:39948351 nonsynonymous SNV 0.997 2 29 hm5C_associated_SNPs_46011 0 0 1 0 2 SUPT5H chr19:39948315 3'AG 39948315 Downstream 37bp
chr19 39948351 39948351 1 + A G UCEC 39948343 + 39948323 39948363 41 GATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA GATGAGTATGAGGACGAGGACCAGTGGGGGGATGGAGCAGA < 41bp 1 0.295151420310367 1 0.153096437454224 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948343 chr19:39948351 nonsynonymous SNV 0.997 2 29 hm5C_associated_SNPs_46011 0 0 1 0 2 SUPT5H chr19:39948380 5'GT 39948380 Upstream 30bp
chr19 39948351 39948351 1 + A G UCEC 39948344 + 39948324 39948364 41 ATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGAG ATGAGTATGAGGACGAGGACCAGTGGGGGGATGGAGCAGAG < 41bp 1 0.549384221602726 1 0.219991713762283 experiment 0.901231556794547 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948344 chr19:39948351 nonsynonymous SNV 0.997 2 28 hm5C_associated_SNPs_46012 0 0 1 0 2 SUPT5H chr19:39948315 3'AG 39948315 Downstream 37bp
chr19 39948351 39948351 1 + A G UCEC 39948344 + 39948324 39948364 41 ATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGAG ATGAGTATGAGGACGAGGACCAGTGGGGGGATGGAGCAGAG < 41bp 1 0.549384221602726 1 0.219991713762283 experiment 0.901231556794547 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948344 chr19:39948351 nonsynonymous SNV 0.997 2 28 hm5C_associated_SNPs_46012 0 0 1 0 2 SUPT5H chr19:39948380 5'GT 39948380 Upstream 30bp
chr19 39948351 39948351 1 + A G UCEC 39948360 + 39948340 39948380 41 GGACCAGTGGGAGGATGGAGCAGAGGACATTCTAGAGAAAG GGACCAGTGGGGGGATGGAGCAGAGGACATTCTAGAGAAAG < 41bp 1 0.649545530591356 1 0.844734191894531 experiment 0.700908938817287 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948360 chr19:39948351 nonsynonymous SNV 0.997 2 12 hm5C_associated_SNPs_46013 0 0 1 0 2 SUPT5H chr19:39948315 3'AG 39948315 Downstream 37bp
chr19 39948351 39948351 1 + A G UCEC 39948360 + 39948340 39948380 41 GGACCAGTGGGAGGATGGAGCAGAGGACATTCTAGAGAAAG GGACCAGTGGGGGGATGGAGCAGAGGACATTCTAGAGAAAG < 41bp 1 0.649545530591356 1 0.844734191894531 experiment 0.700908938817287 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948360 chr19:39948351 nonsynonymous SNV 0.997 2 12 hm5C_associated_SNPs_46013 0 0 1 0 2 SUPT5H chr19:39948380 5'GT 39948380 Upstream 30bp
chr19 39948351 39948351 1 + A G UCEC 39948367 + 39948347 39948387 41 TGGGAGGATGGAGCAGAGGACATTCTAGAGAAAGGTGTGTG TGGGGGGATGGAGCAGAGGACATTCTAGAGAAAGGTGTGTG < 41bp 1 0.0535783829350573 1 0.0631246566772461 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948367 chr19:39948351 nonsynonymous SNV 0.997 2 5 hm5C_associated_SNPs_46014 0 0 1 0 2 SUPT5H chr19:39948315 3'AG 39948315 Downstream 37bp
chr19 39948351 39948351 1 + A G UCEC 39948367 + 39948347 39948387 41 TGGGAGGATGGAGCAGAGGACATTCTAGAGAAAGGTGTGTG TGGGGGGATGGAGCAGAGGACATTCTAGAGAAAGGTGTGTG < 41bp 1 0.0535783829350573 1 0.0631246566772461 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948367 chr19:39948351 nonsynonymous SNV 0.997 2 5 hm5C_associated_SNPs_46014 0 0 1 0 2 SUPT5H chr19:39948380 5'GT 39948380 Upstream 30bp
chrX 70776892 70776892 1 + G A UCEC 70776893 + 70776873 70776913 41 GAGCCTTGCAGTGTTATACGCGTGCCATCCAAATTAATCCT GAGCCTTGCAGTGTTATACACGTGCCATCCAAATTAATCCT < 41bp 1 0.237602396912635 1 0.0417568385601044 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70776893 chrX:70776892 synonymous SNV . 0 20 hm5C_associated_SNPs_46015 0 0 1 0 2 OGT chrX:70776802 3'AG 70776802 Downstream 91bp
chrX 70776892 70776892 1 + G A UCEC 70776893 + 70776873 70776913 41 GAGCCTTGCAGTGTTATACGCGTGCCATCCAAATTAATCCT GAGCCTTGCAGTGTTATACACGTGCCATCCAAATTAATCCT < 41bp 1 0.237602396912635 1 0.0417568385601044 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70776893 chrX:70776892 synonymous SNV . 0 20 hm5C_associated_SNPs_46015 0 0 1 0 2 OGT chrX:70776955 5'GT 70776955 Upstream 64bp
chr4 3101058 3101058 1 + C T UCEC 3101067 + 3101047 3101087 41 TTTCTGCTGTGCAGTGATGACGCAGAGTCAGATGTCAGGAT TTTCTGCTGTGTAGTGATGACGCAGAGTCAGATGTCAGGAT < 41bp 1 0.335603798395304 1 0.409471124410629 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3101067 chr4:3101058 synonymous SNV . 0 12 hm5C_associated_SNPs_46020 0 0 1 0 2 HTT chr4:3101001 3'AG 3101001 Downstream 58bp
chr4 3101058 3101058 1 + C T UCEC 3101067 + 3101047 3101087 41 TTTCTGCTGTGCAGTGATGACGCAGAGTCAGATGTCAGGAT TTTCTGCTGTGTAGTGATGACGCAGAGTCAGATGTCAGGAT < 41bp 1 0.335603798395304 1 0.409471124410629 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3101067 chr4:3101058 synonymous SNV . 0 12 hm5C_associated_SNPs_46020 0 0 1 0 2 HTT chr4:3101121 5'GT 3101121 Upstream 64bp
chr11 45891359 45891359 1 + C T UCEC 45891339 + 45891319 45891359 41 GCTTCCTGACCCGCGGGGACCTCTGGGTCAGCTGGGAGAGC GCTTCCTGACCCGCGGGGACCTCTGGGTCAGCTGGGAGAGT < 41bp 1 0.509901769582751 1 0.236298650503159 experiment 0.980196460834499 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45891339 chr11:45891359 synonymous SNV . 0 41 hm5C_associated_SNPs_46021 0 0 1 0 1 CRY2 chr11:45891368 5'GT 45891368 Upstream 10bp
chr19 49714016 49714016 1 + G A UCEC 49713999 + 49713979 49714019 41 CTAAGGAAGCCGAGCGGAAGCTGCTAACGTGGGAATCGGTG CTAAGGAAGCCGAGCGGAAGCTGCTAACGTGGGAATCAGTG < 41bp 1 0.426671479865265 1 0.331181794404984 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49713999 chr19:49714016 synonymous SNV . 0 38 hm5C_associated_SNPs_46022 0 0 0 0 2 TRPM4 chr19:49713967 3'AG 49713967 Downstream 50bp
chr19 49714016 49714016 1 + G A UCEC 49713999 + 49713979 49714019 41 CTAAGGAAGCCGAGCGGAAGCTGCTAACGTGGGAATCGGTG CTAAGGAAGCCGAGCGGAAGCTGCTAACGTGGGAATCAGTG < 41bp 1 0.426671479865265 1 0.331181794404984 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49713999 chr19:49714016 synonymous SNV . 0 38 hm5C_associated_SNPs_46022 0 0 0 0 2 TRPM4 chr19:49714099 5'GT 49714099 Upstream 84bp
chr19 57795980 57795980 1 + A G UCEC 57795986 + 57795966 57796006 41 GTGGGGGCAGTTGGACGTGACCCAGAGGGCCTTGTACGTGG GTGGGGGCAGTTGGGCGTGACCCAGAGGGCCTTGTACGTGG < 41bp 1 0.694596978676346 1 0.158413887023926 experiment 0.610806042647308 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF460 ENSG00000197714 CDS Human protein_coding chr19:57795986 chr19:57795980 nonsynonymous SNV 0.934 1 15 hm5C_associated_SNPs_46023 0 0 1 0 2 ZNF460 chr19:57795919 3'AG 57795919 Downstream 62bp
chr19 57795980 57795980 1 + A G UCEC 57795986 + 57795966 57796006 41 GTGGGGGCAGTTGGACGTGACCCAGAGGGCCTTGTACGTGG GTGGGGGCAGTTGGGCGTGACCCAGAGGGCCTTGTACGTGG < 41bp 1 0.694596978676346 1 0.158413887023926 experiment 0.610806042647308 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF460 ENSG00000197714 CDS Human protein_coding chr19:57795986 chr19:57795980 nonsynonymous SNV 0.934 1 15 hm5C_associated_SNPs_46023 0 0 1 0 2 ZNF460 chr19:57796045 5'GT 57796045 Upstream 66bp
chr12 56504379 56504379 1 + C T UCEC 56504375 + 56504355 56504395 41 GGACAGAGAACCACTATTTACAAACGAGACCCCTCTAAACA GGACAGAGAACCACTATTTACAAATGAGACCCCTCTAAACA < 41bp 1 0.407348710856317 1 0.397525817155838 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56504375 chr12:56504379 stopgain 1.000 1 25 hm5C_associated_SNPs_46024 0 0 1 0 2 PA2G4 chr12:56504343 3'AG 56504343 Downstream 37bp
chr12 56504379 56504379 1 + C T UCEC 56504375 + 56504355 56504395 41 GGACAGAGAACCACTATTTACAAACGAGACCCCTCTAAACA GGACAGAGAACCACTATTTACAAATGAGACCCCTCTAAACA < 41bp 1 0.407348710856317 1 0.397525817155838 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56504375 chr12:56504379 stopgain 1.000 1 25 hm5C_associated_SNPs_46024 0 0 1 0 2 PA2G4 chr12:56504476 5'GT 56504476 Upstream 98bp
chr5 169127070 169127070 1 + G T UCEC 169127059 + 169127039 169127079 41 TGCTGGTGGGTGACATCATTCAGATTCGCAAGGACTATCCA TGCTGGTGGGTGACATCATTCAGATTCGCAATGACTATCCA < 41bp 1 0.479551382625441 1 0.718341410160065 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169127059 chr5:169127070 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_46025 0 0 1 0 2 DOCK2 chr5:169127018 3'AG 169127018 Downstream 53bp
chr5 169127070 169127070 1 + G T UCEC 169127059 + 169127039 169127079 41 TGCTGGTGGGTGACATCATTCAGATTCGCAAGGACTATCCA TGCTGGTGGGTGACATCATTCAGATTCGCAATGACTATCCA < 41bp 1 0.479551382625441 1 0.718341410160065 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169127059 chr5:169127070 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_46025 0 0 1 0 2 DOCK2 chr5:169127143 5'GT 169127143 Upstream 74bp
chr2 54872430 54872430 1 + C T UCEC 54872413 + 54872393 54872433 41 AAGAAGGAGATCGAAGAGCTCCAAAGCCAAGCCCAGGCCCT AAGAAGGAGATCGAAGAGCTCCAAAGCCAAGCCCAGGTCCT < 41bp 1 0.268921151802453 1 0.120482206344604 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872413 chr2:54872430 nonsynonymous SNV 0.999 1 38 hm5C_associated_SNPs_46026 0 0 1 0 1 SPTBN1 chr2:54872366 3'AG 54872366 Downstream 65bp
chr2 54872430 54872430 1 + C T UCEC 54872420 + 54872400 54872440 41 AGATCGAAGAGCTCCAAAGCCAAGCCCAGGCCCTGAGTCAG AGATCGAAGAGCTCCAAAGCCAAGCCCAGGTCCTGAGTCAG < 41bp 1 0.260544678723597 1 0.512397289276123 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872420 chr2:54872430 nonsynonymous SNV 0.999 1 31 hm5C_associated_SNPs_46027 0 0 1 0 1 SPTBN1 chr2:54872366 3'AG 54872366 Downstream 65bp
chr2 54872430 54872430 1 + C T UCEC 54872425 + 54872405 54872445 41 GAAGAGCTCCAAAGCCAAGCCCAGGCCCTGAGTCAGGAAGG GAAGAGCTCCAAAGCCAAGCCCAGGTCCTGAGTCAGGAAGG < 41bp 1 0.242717281827549 1 0.466951072216034 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872425 chr2:54872430 nonsynonymous SNV 0.999 1 26 hm5C_associated_SNPs_46028 0 0 1 0 1 SPTBN1 chr2:54872366 3'AG 54872366 Downstream 65bp
chr1 10195147 10195147 1 + G A UCEC 10195142 + 10195122 10195162 41 TCAAGTTAGAAACAGTTGATCCCACGTATATTTTTCACCCA TCAAGTTAGAAACAGTTGATCCCACATATATTTTTCACCCA < 41bp 1 0.0800880073827933 1 0.208191961050034 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10195142 chr1:10195147 synonymous SNV . 0 26 hm5C_associated_SNPs_46031 0 0 1 0 1 UBE4B chr1:10195244 5'GT 10195244 Upstream 98bp
chr11 82921423 82921423 1 + C T UCEC 82921433 + 82921413 82921453 41 AACTCATGGACATTCTTTCACTTTACAAATAATGCTCCGAA AACTCATGGATATTCTTTCACTTTACAAATAATGCTCCGAA < 41bp 1 0.336478962281585 1 0.0493552684783936 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD42 ENSG00000137494 CDS Human protein_coding chr11:82921433 chr11:82921423 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_46032 0 0 1 0 3 ANKRD42 chr11:82921342 3'AG 82921342 Downstream 82bp
chr11 82921423 82921423 1 + C T UCEC 82921433 + 82921413 82921453 41 AACTCATGGACATTCTTTCACTTTACAAATAATGCTCCGAA AACTCATGGATATTCTTTCACTTTACAAATAATGCTCCGAA < 41bp 1 0.336478962281585 1 0.0493552684783936 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD42 ENSG00000137494 CDS Human protein_coding chr11:82921433 chr11:82921423 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_46032 0 0 1 0 3 ANKRD42 chr11:82921458 5'GT 82921458 Upstream 36bp
chr11 82921423 82921423 1 + C T UCEC 82921433 + 82921413 82921453 41 AACTCATGGACATTCTTTCACTTTACAAATAATGCTCCGAA AACTCATGGATATTCTTTCACTTTACAAATAATGCTCCGAA < 41bp 1 0.336478962281585 1 0.0493552684783936 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD42 ENSG00000137494 CDS Human protein_coding chr11:82921433 chr11:82921423 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_46032 0 0 1 0 3 ANKRD42 chr11:82921461 5'GT 82921461 Upstream 39bp
chr9 20990301 20990301 1 + G T UCEC 20990296 + 20990276 20990316 41 CAATGCACAGGGTCACTCTGCAGGAGGTTCTCACTCTCCTT CAATGCACAGGGTCACTCTGCAGGATGTTCTCACTCTCCTT < 41bp 1 0.789918516574264 1 0.556716024875641 experiment 0.420162966851471 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20990296 chr9:20990301 nonsynonymous SNV 0.900 1 26 hm5C_associated_SNPs_46033 0 0 0 0 1 FOCAD chr9:20990373 5'GT 20990373 Upstream 73bp
chr11 63997325 63997325 1 + G A UCEC 63997328 + 63997308 63997348 41 TTGTCTCCCCACAGAACGTGCAGAGATTGCTCGAGACGGAG TTGTCTCCCCACAGAACATGCAGAGATTGCTCGAGACGGAG < 41bp 1 0.451465779882846 1 0.126733511686325 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997328 chr11:63997325 nonsynonymous SNV 0.002 0 18 hm5C_associated_SNPs_46034 0 0 0 0 1 NUDT22 chr11:63997322 3'AG 63997322 Downstream 4bp
chr16 83251068 83251068 1 + G A UCEC 83251057 + 83251037 83251077 41 AATGAGAACACAGGGAGCGTCTCCGTGACACGGACCTTGGA AATGAGAACACAGGGAGCGTCTCCGTGACACAGACCTTGGA < 41bp 1 0.437555051748456 1 0.937914490699768 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:83251057 chr16:83251068 nonsynonymous SNV 0.983 0 32 hm5C_associated_SNPs_46035 0 0 0 0 1 CDH13 chr16:83251102 5'GT 83251102 Upstream 35bp
chr15 42052707 42052707 1 + A G UCEC 42052715 + 42052695 42052735 41 TCCAAGGTTTCCAAAAGTCTCATTCTTACTCGAGTAAGTGT TCCAAGGTTTCCGAAAGTCTCATTCTTACTCGAGTAAGTGT < 41bp 1 0.0295282159809595 1 0.0652387142181396 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGA ENSG00000174197 CDS Human protein_coding chr15:42052715 chr15:42052707 nonsynonymous SNV 1.000 5 13 hm5C_associated_SNPs_46036 0 0 1 0 1 MGA chr15:42052727 5'GT 42052727 Upstream 21bp
chr11 47306108 47306108 1 + G A UCEC 47306101 + 47306081 47306121 41 AGCAGCCCCAGCACTGTCATCCACGGAGCCAACTCTGTAAG AGCAGCCCCAGCACTGTCATCCACGGAACCAACTCTGTAAG < 41bp 1 0.291530529415875 1 0.165913701057434 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MADD ENSG00000110514 CDS Human protein_coding chr11:47306101 chr11:47306108 nonsynonymous SNV 0.377 0 28 hm5C_associated_SNPs_46038 0 0 1 0 1 MADD chr11:47306116 5'GT 47306116 Upstream 9bp
chr11 68822733 68822733 1 + C T UCEC 68822727 + 68822707 68822747 41 ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCCCTGGGA ACCAGCACGGCGGACGTGCGCTACCGTGCTGCTCCCTGGGA < 41bp 1 0.524315685680189 1 0.0516352653503418 experiment 0.951368628639622 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68822727 chr11:68822733 synonymous SNV . 0 27 hm5C_associated_SNPs_46039 0 0 0 0 2 TPCN2 chr11:68822643 3'AG 68822643 Downstream 91bp
chr11 68822733 68822733 1 + C T UCEC 68822727 + 68822707 68822747 41 ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCCCTGGGA ACCAGCACGGCGGACGTGCGCTACCGTGCTGCTCCCTGGGA < 41bp 1 0.524315685680189 1 0.0516352653503418 experiment 0.951368628639622 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68822727 chr11:68822733 synonymous SNV . 0 27 hm5C_associated_SNPs_46039 0 0 0 0 2 TPCN2 chr11:68822820 5'GT 68822820 Upstream 88bp
chr17 49247315 49247315 1 + C T UCEC 49247300 + 49247280 49247320 41 CATTTTCACACTTTCGAGGTCTGGGAGGGGCTGAACGTGGT CATTTTCACACTTTCGAGGTCTGGGAGGGGCTGAATGTGGT < 41bp 1 0.541612029486789 1 0.377642869949341 experiment 0.916775941026421 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49247300 chr17:49247315 synonymous SNV . 0 36 hm5C_associated_SNPs_46040 0 0 1 0 2 NME1-NME2;NME2 chr17:49247298 3'AG 49247298 Downstream 18bp
chr17 49247315 49247315 1 + C T UCEC 49247300 + 49247280 49247320 41 CATTTTCACACTTTCGAGGTCTGGGAGGGGCTGAACGTGGT CATTTTCACACTTTCGAGGTCTGGGAGGGGCTGAATGTGGT < 41bp 1 0.541612029486789 1 0.377642869949341 experiment 0.916775941026421 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49247300 chr17:49247315 synonymous SNV . 0 36 hm5C_associated_SNPs_46040 0 0 1 0 2 NME1-NME2;NME2 chr17:49247410 5'GT 49247410 Upstream 96bp
chr17 49247315 49247315 1 + C T UCEC 49247310 + 49247290 49247330 41 CTTTCGAGGTCTGGGAGGGGCTGAACGTGGTGAAGACAGGC CTTTCGAGGTCTGGGAGGGGCTGAATGTGGTGAAGACAGGC < 41bp 1 0.660197321014977 1 0.494282096624374 experiment 0.679605357970046 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49247310 chr17:49247315 synonymous SNV . 0 26 hm5C_associated_SNPs_46041 0 0 1 0 2 NME1-NME2;NME2 chr17:49247298 3'AG 49247298 Downstream 18bp
chr17 49247315 49247315 1 + C T UCEC 49247310 + 49247290 49247330 41 CTTTCGAGGTCTGGGAGGGGCTGAACGTGGTGAAGACAGGC CTTTCGAGGTCTGGGAGGGGCTGAATGTGGTGAAGACAGGC < 41bp 1 0.660197321014977 1 0.494282096624374 experiment 0.679605357970046 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49247310 chr17:49247315 synonymous SNV . 0 26 hm5C_associated_SNPs_46041 0 0 1 0 2 NME1-NME2;NME2 chr17:49247410 5'GT 49247410 Upstream 96bp
chr12 57922970 57922970 1 + C T UCEC 57922978 + 57922958 57922998 41 CCTCCCCGGGCCCGCCCTGGCCGTCCTGCCAAAAACAAGAG CCTCCCCGGGCCTGCCCTGGCCGTCCTGCCAAAAACAAGAG < 41bp 1 0.0693537381840045 1 0.193139612674713 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57922978 chr12:57922970 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_46042 0 0 1 0 1 MBD6 chr12:57922943 3'AG 57922943 Downstream 28bp
chr15 31221496 31221496 1 + G A UCEC 31221493 + 31221473 31221513 41 TGCAGCTGATTCATGATGCCCCCGAGGAGAGCCTGCGGGCC TGCAGCTGATTCATGATGCCCCCAAGGAGAGCCTGCGGGCC < 41bp 1 0.667264107984992 1 0.711269021034241 experiment 0.665471784030016 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control FAN1 ENSG00000198690 CDS Human protein_coding chr15:31221493 chr15:31221496 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_46043 0 0 1 0 1 FAN1 chr15:31221406 3'AG 31221406 Downstream 91bp
chr19 5041222 5041222 1 + C T UCEC 5041241 + 5041221 5041261 41 CCGATCTACGGGGCTGACATCAGCGGCTCTTTGTATGATGA CTGATCTACGGGGCTGACATCAGCGGCTCTTTGTATGATGA < 41bp 1 0.44053600532731 1 0.809845328330994 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KDM4B ENSG00000127663 CDS Human protein_coding chr19:5041241 chr19:5041222 nonsynonymous SNV 0.859 4 2 hm5C_associated_SNPs_46044 0 0 1 0 2 KDM4B chr19:5041148 3'AG 5041148 Downstream 75bp
chr19 5041222 5041222 1 + C T UCEC 5041241 + 5041221 5041261 41 CCGATCTACGGGGCTGACATCAGCGGCTCTTTGTATGATGA CTGATCTACGGGGCTGACATCAGCGGCTCTTTGTATGATGA < 41bp 1 0.44053600532731 1 0.809845328330994 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KDM4B ENSG00000127663 CDS Human protein_coding chr19:5041241 chr19:5041222 nonsynonymous SNV 0.859 4 2 hm5C_associated_SNPs_46044 0 0 1 0 2 KDM4B chr19:5041262 5'GT 5041262 Upstream 41bp
chr2 102486175 102486175 1 + C T UCEC 102486184 + 102486164 102486204 41 CAGTGAGGAGTCGGGGACGACGGATGAGGAGGACGACGATG CAGTGAGGAGTTGGGGACGACGGATGAGGAGGACGACGATG < 41bp 1 0.686831786470311 1 0.599751234054565 experiment 0.626336427059378 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102486184 chr2:102486175 nonsynonymous SNV 0.992 3 12 hm5C_associated_SNPs_46045 0 0 1 0 1 MAP4K4 chr2:102486084 3'AG 102486084 Downstream 92bp
chr5 118529632 118529632 1 + A G UCEC 118529637 + 118529617 118529657 41 TAGCATCAGATTTCCATCTCCAGGAACATTCTAATTCAAAT TAGCATCAGATTTCCGTCTCCAGGAACATTCTAATTCAAAT < 41bp 1 0.290931741178832 1 0.827045619487762 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DMXL1 ENSG00000172869 CDS Human protein_coding chr5:118529637 chr5:118529632 nonsynonymous SNV 0.994 1 16 hm5C_associated_SNPs_46047 0 0 0 0 1 DMXL1 chr5:118529665 5'GT 118529665 Upstream 34bp
chr1 171544168 171544168 1 + A G UCEC 171544172 + 171544152 171544192 41 AACTGGAGTCAGCAGTAGTGCCAGTGGACCAAGCACTGCTA AACTGGAGTCAGCAGTGGTGCCAGTGGACCAAGCACTGCTA < 41bp 1 0.195387186053241 1 0.448800146579742 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171544172 chr1:171544168 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_46048 0 0 1 0 1 PRRC2C chr1:171544267 5'GT 171544267 Upstream 100bp
chr19 39979217 39979217 1 + C T UCEC 39979223 + 39979203 39979243 41 ACGTGCGAACCGTGCTGGAGCACTATGCCCTGGAGGATGAC ACGTGCGAACCGTGTTGGAGCACTATGCCCTGGAGGATGAC < 41bp 1 0.45751994209663 1 0.0738299787044525 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TIMM50 ENSG00000105197 CDS Human protein_coding chr19:39979223 chr19:39979217 synonymous SNV . 0 15 hm5C_associated_SNPs_46049 0 0 1 0 2 TIMM50 chr19:39979179 3'AG 39979179 Downstream 39bp
chr19 39979217 39979217 1 + C T UCEC 39979223 + 39979203 39979243 41 ACGTGCGAACCGTGCTGGAGCACTATGCCCTGGAGGATGAC ACGTGCGAACCGTGTTGGAGCACTATGCCCTGGAGGATGAC < 41bp 1 0.45751994209663 1 0.0738299787044525 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TIMM50 ENSG00000105197 CDS Human protein_coding chr19:39979223 chr19:39979217 synonymous SNV . 0 15 hm5C_associated_SNPs_46049 0 0 1 0 2 TIMM50 chr19:39979285 5'GT 39979285 Upstream 69bp
chr5 179143237 179143237 1 + G A UCEC 179143220 + 179143200 179143240 41 TTCACGTGAAATTGAGGACCCAGAAGACCGGAAGCCCGAGG TTCACGTGAAATTGAGGACCCAGAAGACCGGAAGCCCAAGG < 41bp 1 0.793759422343941 1 0.755387604236603 experiment 0.412481155312117 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179143220 chr5:179143237 nonsynonymous SNV 0.992 2 38 hm5C_associated_SNPs_46051 0 0 1 0 1 CANX chr5:179143295 5'GT 179143295 Upstream 59bp
chr5 141353262 141353262 1 + A G UCEC 141353260 + 141353240 141353280 41 GTCTGTCCAAGGTGGAGAAACCAGGATCTATTTGGATTTGC GTCTGTCCAAGGTGGAGAAACCGGGATCTATTTGGATTTGC < 41bp 1 0.686349686013076 1 0.139412850141525 experiment 0.627300627973849 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF14 ENSG00000013561 CDS Human protein_coding chr5:141353260 chr5:141353262 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_46052 0 0 1 0 1 RNF14 chr5:141353307 5'GT 141353307 Upstream 46bp
chr14 72152256 72152256 1 + T C UCEC 72152244 + 72152224 72152264 41 CAGGTGCAGAGTCCCATGACCTCGCGGCTGAATGCTGGAAA CAGGTGCAGAGTCCCATGACCTCGCGGCTGAACGCTGGAAA < 41bp 1 0.473534948468281 1 0.393606126308441 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72152244 chr14:72152256 synonymous SNV . 0 33 hm5C_associated_SNPs_46053 0 0 1 0 1 SIPA1L1 chr14:72152348 5'GT 72152348 Upstream 93bp
chrX 133511652 133511652 1 + C G UCEC 133511658 + 133511638 133511678 41 TTTAAAAATCATGTCAAGCTCAGTTGAACAGAAAAAAGGGC TTTAAAAATCATGTGAAGCTCAGTTGAACAGAAAAAAGGGC < 41bp 1 0.230945902682736 1 0.30511462688446 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHF6 ENSG00000156531 CDS Human protein_coding chrX:133511658 chrX:133511652 stopgain 1.000 1 15 hm5C_associated_SNPs_46054 0 0 1 0 1 PHF6 chrX:133511602 3'AG 133511602 Downstream 51bp
chr20 31019209 31019209 1 + C T UCEC 31019221 + 31019201 31019241 41 GCCCTGATCAACTCTCGGACCTTCCATGCCTTACCATCACA GCCCTGATTAACTCTCGGACCTTCCATGCCTTACCATCACA < 41bp 1 0.0805353888682617 1 0.0821585059165955 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31019221 chr20:31019209 synonymous SNV . 0 9 hm5C_associated_SNPs_46055 0 0 1 0 2 ASXL1 chr20:31019124 3'AG 31019124 Downstream 86bp
chr20 31019209 31019209 1 + C T UCEC 31019221 + 31019201 31019241 41 GCCCTGATCAACTCTCGGACCTTCCATGCCTTACCATCACA GCCCTGATTAACTCTCGGACCTTCCATGCCTTACCATCACA < 41bp 1 0.0805353888682617 1 0.0821585059165955 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31019221 chr20:31019209 synonymous SNV . 0 9 hm5C_associated_SNPs_46055 0 0 1 0 2 ASXL1 chr20:31019287 5'GT 31019287 Upstream 79bp
chr10 129141972 129141972 1 + G A UCEC 129141960 + 129141940 129141980 41 GCTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTC GCTTTCCTTACTCAAGAGTCCCTGCAACTGGAAAATTTTTC < 41bp 1 0.00974155226875579 1 0.0625201165676117 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141960 chr10:129141972 synonymous SNV . 0 33 hm5C_associated_SNPs_46056 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 63bp
chr10 129141972 129141972 1 + G A UCEC 129141960 + 129141940 129141980 41 GCTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTC GCTTTCCTTACTCAAGAGTCCCTGCAACTGGAAAATTTTTC < 41bp 1 0.00974155226875579 1 0.0625201165676117 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141960 chr10:129141972 synonymous SNV . 0 33 hm5C_associated_SNPs_46056 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 39bp
chr10 129141972 129141972 1 + G A UCEC 129141961 + 129141941 129141981 41 CTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCA CTTTCCTTACTCAAGAGTCCCTGCAACTGGAAAATTTTTCA < 41bp 1 0.222011308818899 1 0.295406699180603 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141961 chr10:129141972 synonymous SNV . 0 32 hm5C_associated_SNPs_46057 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 63bp
chr10 129141972 129141972 1 + G A UCEC 129141961 + 129141941 129141981 41 CTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCA CTTTCCTTACTCAAGAGTCCCTGCAACTGGAAAATTTTTCA < 41bp 1 0.222011308818899 1 0.295406699180603 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141961 chr10:129141972 synonymous SNV . 0 32 hm5C_associated_SNPs_46057 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 39bp
chr10 129141972 129141972 1 + G A UCEC 129141964 + 129141944 129141984 41 TCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGT TCCTTACTCAAGAGTCCCTGCAACTGGAAAATTTTTCAAGT < 41bp 1 0.0910304432244267 1 0.19410029053688 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141964 chr10:129141972 synonymous SNV . 0 29 hm5C_associated_SNPs_46058 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 63bp
chr10 129141972 129141972 1 + G A UCEC 129141964 + 129141944 129141984 41 TCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGT TCCTTACTCAAGAGTCCCTGCAACTGGAAAATTTTTCAAGT < 41bp 1 0.0910304432244267 1 0.19410029053688 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141964 chr10:129141972 synonymous SNV . 0 29 hm5C_associated_SNPs_46058 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 39bp
chr10 129141972 129141972 1 + G A UCEC 129141967 + 129141947 129141987 41 TTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGTGCC TTACTCAAGAGTCCCTGCAACTGGAAAATTTTTCAAGTGCC < 41bp 1 0.413478444391283 1 0.670081198215485 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141967 chr10:129141972 synonymous SNV . 0 26 hm5C_associated_SNPs_46059 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 63bp
chr10 129141972 129141972 1 + G A UCEC 129141967 + 129141947 129141987 41 TTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGTGCC TTACTCAAGAGTCCCTGCAACTGGAAAATTTTTCAAGTGCC < 41bp 1 0.413478444391283 1 0.670081198215485 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141967 chr10:129141972 synonymous SNV . 0 26 hm5C_associated_SNPs_46059 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 39bp
chr10 129141972 129141972 1 + G A UCEC 129141980 + 129141960 129142000 41 CCTGCAACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAA CCTGCAACTGGAAAATTTTTCAAGTGCCAAGAGAGCCAAAA < 41bp 1 0.292125214836635 1 0.936692476272583 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141980 chr10:129141972 synonymous SNV . 0 13 hm5C_associated_SNPs_46060 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 63bp
chr10 129141972 129141972 1 + G A UCEC 129141980 + 129141960 129142000 41 CCTGCAACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAA CCTGCAACTGGAAAATTTTTCAAGTGCCAAGAGAGCCAAAA < 41bp 1 0.292125214836635 1 0.936692476272583 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141980 chr10:129141972 synonymous SNV . 0 13 hm5C_associated_SNPs_46060 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 39bp
chr10 129141972 129141972 1 + G A UCEC 129141986 + 129141966 129142006 41 ACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTA ACTGGAAAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTA < 41bp 1 0.0467919042857434 1 0.201526492834091 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141986 chr10:129141972 synonymous SNV . 0 7 hm5C_associated_SNPs_46061 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 63bp
chr10 129141972 129141972 1 + G A UCEC 129141986 + 129141966 129142006 41 ACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTA ACTGGAAAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTA < 41bp 1 0.0467919042857434 1 0.201526492834091 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141986 chr10:129141972 synonymous SNV . 0 7 hm5C_associated_SNPs_46061 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 39bp
chr10 129141972 129141972 1 + G A UCEC 129141987 + 129141967 129142007 41 CTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAA CTGGAAAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAA < 41bp 1 0.46143027286047 1 0.609283745288849 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141987 chr10:129141972 synonymous SNV . 0 6 hm5C_associated_SNPs_46062 0 0 1 0 2 DOCK1 chr10:129141910 3'AG 129141910 Downstream 63bp
chr10 129141972 129141972 1 + G A UCEC 129141987 + 129141967 129142007 41 CTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAA CTGGAAAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAA < 41bp 1 0.46143027286047 1 0.609283745288849 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141987 chr10:129141972 synonymous SNV . 0 6 hm5C_associated_SNPs_46062 0 0 1 0 2 DOCK1 chr10:129142010 5'GT 129142010 Upstream 39bp
chr20 62521232 62521232 1 + C T UCEC 62521246 + 62521226 62521266 41 GAACGGCAGTGACAACCTCCCTTCCTCAGCGGGGAGTGGTG GAACGGTAGTGACAACCTCCCTTCCTCAGCGGGGAGTGGTG < 41bp 1 0.223954563461157 1 0.0559441447257996 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TPD52L2 ENSG00000101150 CDS Human protein_coding chr20:62521246 chr20:62521232 synonymous SNV 0.971 0 7 hm5C_associated_SNPs_46063 0 0 1 0 1 TPD52L2 chr20:62521203 3'AG 62521203 Downstream 30bp
chr1 214794263 214794263 1 + T C UCEC 214794259 + 214794239 214794279 41 ACAATTCTAGCAGTCCTCATCTTTTGGATCAATTAAAAGCG ACAATTCTAGCAGTCCTCATCTTTCGGATCAATTAAAAGCG < 41bp 1 0.0291336624531981 1 0.173876911401749 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CENPF ENSG00000117724 CDS Human protein_coding chr1:214794259 chr1:214794263 nonsynonymous SNV 0.933 4 25 hm5C_associated_SNPs_46064 0 0 1 0 1 CENPF chr1:214794289 5'GT 214794289 Upstream 27bp
chr22 46733823 46733823 1 + A G UCEC 46733839 + 46733819 46733859 41 GAGTATTGGAATGATGTGTTCAGGTGAGTGCGGGTCACAGC GAGTGTTGGAATGATGTGTTCAGGTGAGTGCGGGTCACAGC < 41bp 1 0.756782796883605 1 0.707243740558624 experiment 0.48643440623279 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRMU ENSG00000100416 CDS Human protein_coding chr22:46733839 chr22:46733823 nonsynonymous SNV 0.994 4 5 hm5C_associated_SNPs_46065 0 0 1 0 1 TRMU chr22:46733841 5'GT 46733841 Upstream 19bp
chr10 114711283 114711283 1 + T C UCEC 114711291 + 114711271 114711311 41 AAGGGGCCACCGTATCCCGGCTACCCCTTCATCATGATCCC AAGGGGCCACCGCATCCCGGCTACCCCTTCATCATGATCCC < 41bp 1 0.397667686559005 1 0.0675317645072937 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114711291 chr10:114711283 nonsynonymous SNV 0.979 4 13 hm5C_associated_SNPs_46066 0 0 1 0 2 TCF7L2 chr10:114711242 3'AG 114711242 Downstream 42bp
chr10 114711283 114711283 1 + T C UCEC 114711291 + 114711271 114711311 41 AAGGGGCCACCGTATCCCGGCTACCCCTTCATCATGATCCC AAGGGGCCACCGCATCCCGGCTACCCCTTCATCATGATCCC < 41bp 1 0.397667686559005 1 0.0675317645072937 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114711291 chr10:114711283 nonsynonymous SNV 0.979 4 13 hm5C_associated_SNPs_46066 0 0 1 0 2 TCF7L2 chr10:114711366 5'GT 114711366 Upstream 84bp
chr1 223934711 223934711 1 + C T UCEC 223934719 + 223934699 223934739 41 GATCAACGGATGCTATGAAGCGCTATCAGGGGGTGCCACCA GATCAACGGATGTTATGAAGCGCTATCAGGGGGTGCCACCA < 41bp 1 0.75810137333668 1 0.71918785572052 experiment 0.48379725332664 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223934719 chr1:223934711 synonymous SNV . 0 13 hm5C_associated_SNPs_46067 0 0 1 0 1 CAPN2 chr1:223934699 3'AG 223934699 Downstream 13bp
chr1 223934711 223934711 1 + C T UCEC 223934721 + 223934701 223934741 41 TCAACGGATGCTATGAAGCGCTATCAGGGGGTGCCACCACT TCAACGGATGTTATGAAGCGCTATCAGGGGGTGCCACCACT < 41bp 1 0.0669942885594445 1 0.0720525681972504 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223934721 chr1:223934711 synonymous SNV . 0 11 hm5C_associated_SNPs_46068 0 0 1 0 1 CAPN2 chr1:223934699 3'AG 223934699 Downstream 13bp
chr1 206902140 206902140 1 + A C UCEC 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCCGCACATCGTACGGATCGTGGCTGTGTACGAGAATCT < 41bp 1 0.470307063797062 1 0.119911551475525 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902140 nonsynonymous SNV 0.993 3 26 hm5C_associated_SNPs_46069 0 0 1 0 2 MAPKAPK2 chr1:206902055 3'AG 206902055 Downstream 86bp
chr1 206902140 206902140 1 + A C UCEC 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCCGCACATCGTACGGATCGTGGCTGTGTACGAGAATCT < 41bp 1 0.470307063797062 1 0.119911551475525 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902140 nonsynonymous SNV 0.993 3 26 hm5C_associated_SNPs_46069 0 0 1 0 2 MAPKAPK2 chr1:206902194 5'GT 206902194 Upstream 55bp
chr6 88374525 88374525 1 + A G UCEC 88374522 + 88374502 88374542 41 CGCCCCAGACATCTGCATAGCATACAAACTGCACCTAGAGT CGCCCCAGACATCTGCATAGCATGCAAACTGCACCTAGAGT < 41bp 1 0.212508341952535 1 0.182071089744568 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ORC3 ENSG00000135336 CDS Human protein_coding chr6:88374522 chr6:88374525 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_46070 0 0 1 0 2 ORC3 chr6:88374461 3'AG 88374461 Downstream 65bp
chr6 88374525 88374525 1 + A G UCEC 88374522 + 88374502 88374542 41 CGCCCCAGACATCTGCATAGCATACAAACTGCACCTAGAGT CGCCCCAGACATCTGCATAGCATGCAAACTGCACCTAGAGT < 41bp 1 0.212508341952535 1 0.182071089744568 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ORC3 ENSG00000135336 CDS Human protein_coding chr6:88374522 chr6:88374525 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_46070 0 0 1 0 2 ORC3 chr6:88374577 5'GT 88374577 Upstream 53bp
chr10 134981000 134981000 1 + C G UCEC 134980995 + 134980975 134981015 41 TCCATGCGGAGCGTGGCCCACGCCGCCATCTTCCAGAGCCT TCCATGCGGAGCGTGGCCCACGCCGGCATCTTCCAGAGCCT < 41bp 1 0.55088106493868 1 0.340478658676147 experiment 0.89823787012264 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KNDC1 ENSG00000171798 CDS Human protein_coding chr10:134980995 chr10:134981000 nonsynonymous SNV 0.828 1 26 hm5C_associated_SNPs_46071 0 0 0 0 1 KNDC1 chr10:134981083 5'GT 134981083 Upstream 84bp
chr7 127342515 127342515 1 + A G UCEC 127342535 + 127342515 127342555 41 AGTGTGGTCAGGGCCCTGCTCCTCCCAGATTACTACCTGGT GGTGTGGTCAGGGCCCTGCTCCTCCCAGATTACTACCTGGT < 41bp 1 0.0479086164408242 1 0.127466887235641 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SND1 ENSG00000197157 CDS Human protein_coding chr7:127342535 chr7:127342515 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_46072 0 0 1 0 2 SND1 chr7:127342489 3'AG 127342489 Downstream 27bp
chr7 127342515 127342515 1 + A G UCEC 127342535 + 127342515 127342555 41 AGTGTGGTCAGGGCCCTGCTCCTCCCAGATTACTACCTGGT GGTGTGGTCAGGGCCCTGCTCCTCCCAGATTACTACCTGGT < 41bp 1 0.0479086164408242 1 0.127466887235641 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SND1 ENSG00000197157 CDS Human protein_coding chr7:127342535 chr7:127342515 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_46072 0 0 1 0 2 SND1 chr7:127342580 5'GT 127342580 Upstream 66bp
chr5 154330456 154330456 1 + T C UCEC 154330472 + 154330452 154330492 41 AAATTGTTTATCCTCCACAACTGCCTGGAGAACCTCGGAGA AAATCGTTTATCCTCCACAACTGCCTGGAGAACCTCGGAGA < 41bp 1 0.468547013014833 1 0.058233916759491 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MRPL22 ENSG00000082515 CDS Human protein_coding chr5:154330472 chr5:154330456 synonymous SNV . 0 5 hm5C_associated_SNPs_46073 0 0 1 0 1 MRPL22 chr5:154330498 5'GT 154330498 Upstream 43bp
chr11 64085790 64085790 1 + G A UCEC 64085786 + 64085766 64085806 41 GCAGCGGCAGCAAGACGGTACAGTGAAGGAGAGTGGGCGTC GCAGCGGCAGCAAGACGGTACAGTAAAGGAGAGTGGGCGTC < 41bp 1 0.716557810147241 1 0.24184650182724 experiment 0.566884379705517 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRDX5 ENSG00000126432 CDS Human protein_coding chr11:64085786 chr11:64085790 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_46076 0 0 1 0 1 PRDX5 chr11:64085858 5'GT 64085858 Upstream 69bp
chr1 155033954 155033954 1 + A G UCEC 155033936 + 155033916 155033956 41 CCCCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG CCCCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCGAG < 41bp 1 0.24362262778295 1 0.531488239765167 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155033936 chr1:155033954 nonsynonymous SNV 0.999 3 39 hm5C_associated_SNPs_46077 0 0 1 0 3 ADAM15 chr1:155033891 3'AG 155033891 Downstream 64bp
chr1 155033954 155033954 1 + A G UCEC 155033936 + 155033916 155033956 41 CCCCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG CCCCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCGAG < 41bp 1 0.24362262778295 1 0.531488239765167 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155033936 chr1:155033954 nonsynonymous SNV 0.999 3 39 hm5C_associated_SNPs_46077 0 0 1 0 3 ADAM15 chr1:155033894 3'AG 155033894 Downstream 61bp
chr1 155033954 155033954 1 + A G UCEC 155033936 + 155033916 155033956 41 CCCCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG CCCCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCGAG < 41bp 1 0.24362262778295 1 0.531488239765167 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155033936 chr1:155033954 nonsynonymous SNV 0.999 3 39 hm5C_associated_SNPs_46077 0 0 1 0 3 ADAM15 chr1:155033965 5'GT 155033965 Upstream 12bp
chr5 37697793 37697793 1 + T C UCEC 37697804 + 37697784 37697824 41 GCTCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTC GCTCATGACCCGGGCACAGACACTTCTTGCGTGACTTTTTC < 41bp 1 0.385093290878185 1 0.0567492544651031 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697804 chr5:37697793 nonsynonymous SNV 0.991 0 10 hm5C_associated_SNPs_46078 0 0 1 2 2 WDR70 chr5:37697757 3'AG 37697757 Downstream 37bp
chr5 37697793 37697793 1 + T C UCEC 37697804 + 37697784 37697824 41 GCTCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTC GCTCATGACCCGGGCACAGACACTTCTTGCGTGACTTTTTC < 41bp 1 0.385093290878185 1 0.0567492544651031 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697804 chr5:37697793 nonsynonymous SNV 0.991 0 10 hm5C_associated_SNPs_46078 0 0 1 2 2 WDR70 chr5:37697856 5'GT 37697856 Upstream 64bp
chr5 37697793 37697793 1 + T C UCEC 37697806 + 37697786 37697826 41 TCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTCCT TCATGACCCGGGCACAGACACTTCTTGCGTGACTTTTTCCT < 41bp 1 0.236267017535377 1 0.0515223145484924 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697806 chr5:37697793 nonsynonymous SNV 0.991 0 8 hm5C_associated_SNPs_46079 0 0 1 2 2 WDR70 chr5:37697757 3'AG 37697757 Downstream 37bp
chr5 37697793 37697793 1 + T C UCEC 37697806 + 37697786 37697826 41 TCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTCCT TCATGACCCGGGCACAGACACTTCTTGCGTGACTTTTTCCT < 41bp 1 0.236267017535377 1 0.0515223145484924 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697806 chr5:37697793 nonsynonymous SNV 0.991 0 8 hm5C_associated_SNPs_46079 0 0 1 2 2 WDR70 chr5:37697856 5'GT 37697856 Upstream 64bp
chr15 91312387 91312387 1 + T C UCEC 91312388 + 91312368 91312408 41 TGCAAGTAACAGACTCATTTCTACTCTGGAGAATCTCTATG TGCAAGTAACAGACTCATTCCTACTCTGGAGAATCTCTATG < 41bp 1 0.29299470533206 1 0.027360588312149 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91312388 chr15:91312387 nonsynonymous SNV 0.964 2 20 hm5C_associated_SNPs_46081 0 0 1 0 2 BLM chr15:91312363 3'AG 91312363 Downstream 25bp
chr15 91312387 91312387 1 + T C UCEC 91312388 + 91312368 91312408 41 TGCAAGTAACAGACTCATTTCTACTCTGGAGAATCTCTATG TGCAAGTAACAGACTCATTCCTACTCTGGAGAATCTCTATG < 41bp 1 0.29299470533206 1 0.027360588312149 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91312388 chr15:91312387 nonsynonymous SNV 0.964 2 20 hm5C_associated_SNPs_46081 0 0 1 0 2 BLM chr15:91312461 5'GT 91312461 Upstream 75bp
chr8 77619841 77619841 1 + T C UCEC 77619825 + 77619805 77619845 41 TCCGGCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCC TCCGGCTTGCCAGTGGTCAGCTAATGGGTGATGACCCGTCC < 41bp 1 0.240253722880132 1 0.587201237678528 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77619825 chr8:77619841 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_46082 0 0 0 0 1 ZFHX4 chr8:77619781 3'AG 77619781 Downstream 61bp
chr5 147819238 147819238 1 + T C UCEC 147819249 + 147819229 147819269 41 AGCAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGT AGCAGAAGCCATTTAGTGGTCCCTACCCCTATCACATCTGT < 41bp 1 0.231009593272157 1 0.0447927117347717 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819249 chr5:147819238 nonsynonymous SNV 0.955 3 10 hm5C_associated_SNPs_46083 0 0 1 0 1 FBXO38 chr5:147819210 3'AG 147819210 Downstream 29bp
chr5 147819238 147819238 1 + T C UCEC 147819251 + 147819231 147819271 41 CAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGTAT CAGAAGCCATTTAGTGGTCCCTACCCCTATCACATCTGTAT < 41bp 1 0.118417625383208 1 0.0238787531852722 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819251 chr5:147819238 nonsynonymous SNV 0.955 3 8 hm5C_associated_SNPs_46084 0 0 1 0 1 FBXO38 chr5:147819210 3'AG 147819210 Downstream 29bp
chr5 147819238 147819238 1 + T C UCEC 147819256 + 147819236 147819276 41 GCTATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCC GCCATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCC < 41bp 1 0.0708595958904437 1 0.114633679389954 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819256 chr5:147819238 nonsynonymous SNV 0.955 3 3 hm5C_associated_SNPs_46085 0 0 1 0 1 FBXO38 chr5:147819210 3'AG 147819210 Downstream 29bp
chr5 147819238 147819238 1 + T C UCEC 147819257 + 147819237 147819277 41 CTATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCCA CCATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCCA < 41bp 1 0.0832390896697855 1 0.218760430812836 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819257 chr5:147819238 nonsynonymous SNV 0.955 3 2 hm5C_associated_SNPs_46086 0 0 1 0 1 FBXO38 chr5:147819210 3'AG 147819210 Downstream 29bp
chr16 15111278 15111278 1 + T C UCEC 15111272 + 15111252 15111292 41 ACTGTATAAACACGATGACCCTGCCTTGGTAAGTTTCCACT ACTGTATAAACACGATGACCCTGCCTCGGTAAGTTTCCACT < 41bp 1 0.320163356261867 1 0.0577011406421661 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDXDC1 ENSG00000179889 CDS Human protein_coding chr16:15111272 chr16:15111278 nonsynonymous SNV 0.973 3 27 hm5C_associated_SNPs_46089 0 0 1 0 1 PDXDC1 chr16:15111279 5'GT 15111279 Upstream 2bp
chr17 80529626 80529626 1 + C T UCEC 80529633 + 80529613 80529653 41 CGCCTTACTCCTACGCGCAGCTGATAGTTCAGGCGATTACG CGCCTTACTCCTATGCGCAGCTGATAGTTCAGGCGATTACG < 41bp 1 0.0833771866739308 1 0.0755923986434937 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80529633 chr17:80529626 synonymous SNV . 0 14 hm5C_associated_SNPs_46090 0 0 1 0 1 FOXK2 chr17:80529600 3'AG 80529600 Downstream 27bp
chr4 148555321 148555321 1 + A G UCEC 148555322 + 148555302 148555342 41 GAAAACTTTATATTAAAGGACGGACAGTCAGGGGACATCCC GAAAACTTTATATTAAAGGGCGGACAGTCAGGGGACATCCC < 41bp 1 0.125550927644916 1 0.14733037352562 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM184C ENSG00000164168 CDS Human protein_coding chr4:148555322 chr4:148555321 synonymous SNV . 0 20 hm5C_associated_SNPs_46091 0 0 1 0 1 TMEM184C chr4:148555320 3'AG 148555320 Downstream 2bp
chr6 151258049 151258049 1 + T G UCEC 151258052 + 151258032 151258072 41 CCTGCTTGAGGCAGCCTTCCCAAGGACCGACGTTTGGAGTG CCTGCTTGAGGCAGCCTGCCCAAGGACCGACGTTTGGAGTG < 41bp 1 0.701188547051899 1 0.9373379945755 experiment 0.597622905896202 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MTHFD1L ENSG00000120254 CDS Human protein_coding chr6:151258052 chr6:151258049 nonsynonymous SNV 0.994 4 18 hm5C_associated_SNPs_46092 0 0 1 0 1 MTHFD1L chr6:151258076 5'GT 151258076 Upstream 28bp
chr9 32440573 32440573 1 + C T UCEC 32440574 + 32440554 32440594 41 GAGACTGGGCAGCTAAGGGCCCTTTCCTGCTGGTGAGTATG GAGACTGGGCAGCTAAGGGTCCTTTCCTGCTGGTGAGTATG < 41bp 1 0.0201118943896876 1 0.0338228046894073 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACO1 ENSG00000122729 CDS Human protein_coding chr9:32440574 chr9:32440573 synonymous SNV . 0 20 hm5C_associated_SNPs_46094 0 0 1 1 1 ACO1 chr9:32440585 5'GT 32440585 Upstream 13bp
chr3 97661184 97661184 1 + A G UCEC 97661188 + 97661168 97661208 41 CACCTGGAGCTAAAGTAGCTCTATGGACTGAACATGGGCAA CACCTGGAGCTAAAGTGGCTCTATGGACTGAACATGGGCAA < 41bp 1 0.180969218107631 1 0.126392632722855 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRYBG3 ENSG00000080200 CDS Human protein_coding chr3:97661188 chr3:97661184 synonymous SNV . 0 17 hm5C_associated_SNPs_46095 0 0 1 0 1 CRYBG3 chr3:97661128 3'AG 97661128 Downstream 57bp
chr1 6681504 6681504 1 + G A UCEC 6681488 + 6681468 6681508 41 CAGATGACGATTCCTGGGACCTCGTGACCTGCTTCTGCATG CAGATGACGATTCCTGGGACCTCGTGACCTGCTTCTACATG < 41bp 1 0.383819843316605 1 0.0184022784233093 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF13 ENSG00000116273 CDS Human protein_coding chr1:6681488 chr1:6681504 nonsynonymous SNV 1.000 5 37 hm5C_associated_SNPs_46096 0 0 1 0 1 PHF13 chr1:6681471 3'AG 6681471 Downstream 34bp
chr12 6941055 6941055 1 + C A UCEC 6941063 + 6941043 6941083 41 GCCATGGAGCACCTGGGGACCAGCTTCAAGGATCCTGTGAG GCCATGGAGCACATGGGGACCAGCTTCAAGGATCCTGTGAG < 41bp 1 0.367920176856968 1 0.295584917068481 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control P3H3 ENSG00000110811 CDS Human protein_coding chr12:6941063 chr12:6941055 nonsynonymous SNV 0.991 3 13 hm5C_associated_SNPs_46097 0 0 1 0 2 P3H3 chr12:6940989 3'AG 6940989 Downstream 67bp
chr12 6941055 6941055 1 + C A UCEC 6941063 + 6941043 6941083 41 GCCATGGAGCACCTGGGGACCAGCTTCAAGGATCCTGTGAG GCCATGGAGCACATGGGGACCAGCTTCAAGGATCCTGTGAG < 41bp 1 0.367920176856968 1 0.295584917068481 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control P3H3 ENSG00000110811 CDS Human protein_coding chr12:6941063 chr12:6941055 nonsynonymous SNV 0.991 3 13 hm5C_associated_SNPs_46097 0 0 1 0 2 P3H3 chr12:6941078 5'GT 6941078 Upstream 24bp
chr19 42398363 42398363 1 + A G UCEC 42398364 + 42398344 42398384 41 GACAAGAAGTCGGGGAGGAACTTCTTCCGGAAAAAGGTGCT GACAAGAAGTCGGGGAGGAGCTTCTTCCGGAAAAAGGTGCT < 41bp 1 0.123581805254972 1 0.367242693901062 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42398364 chr19:42398363 nonsynonymous SNV 0.993 0 20 hm5C_associated_SNPs_46099 0 0 1 0 2 ARHGEF1 chr19:42398280 3'AG 42398280 Downstream 84bp
chr19 42398363 42398363 1 + A G UCEC 42398364 + 42398344 42398384 41 GACAAGAAGTCGGGGAGGAACTTCTTCCGGAAAAAGGTGCT GACAAGAAGTCGGGGAGGAGCTTCTTCCGGAAAAAGGTGCT < 41bp 1 0.123581805254972 1 0.367242693901062 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42398364 chr19:42398363 nonsynonymous SNV 0.993 0 20 hm5C_associated_SNPs_46099 0 0 1 0 2 ARHGEF1 chr19:42398379 5'GT 42398379 Upstream 17bp
chr11 62655902 62655902 1 + T C UCEC 62655920 + 62655900 62655940 41 CGTTCTCCGCTGGGCCTGGACTCTTCTCCTATATCCGCCAC CGCTCTCCGCTGGGCCTGGACTCTTCTCCTATATCCGCCAC < 41bp 1 0.389279320487 1 0.160574346780777 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62655920 chr11:62655902 nonsynonymous SNV 0.001 1 3 hm5C_associated_SNPs_46100 0 0 1 0 1 SLC3A2 chr11:62655803 3'AG 62655803 Downstream 100bp
chr1 16056355 16056355 1 + C T UCEC 16056369 + 16056349 16056389 41 CCCCAGCATCCTGACGGATGCCACCATGGAGAAGCTGGCAC CCCCAGTATCCTGACGGATGCCACCATGGAGAAGCTGGCAC < 41bp 1 0.0657518513542815 1 0.0742992162704468 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16056369 chr1:16056355 synonymous SNV . 0 7 hm5C_associated_SNPs_46101 0 0 1 0 2 PLEKHM2 chr1:16056292 3'AG 16056292 Downstream 64bp
chr1 16056355 16056355 1 + C T UCEC 16056369 + 16056349 16056389 41 CCCCAGCATCCTGACGGATGCCACCATGGAGAAGCTGGCAC CCCCAGTATCCTGACGGATGCCACCATGGAGAAGCTGGCAC < 41bp 1 0.0657518513542815 1 0.0742992162704468 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16056369 chr1:16056355 synonymous SNV . 0 7 hm5C_associated_SNPs_46101 0 0 1 0 2 PLEKHM2 chr1:16056424 5'GT 16056424 Upstream 70bp
chr1 16056355 16056355 1 + C T UCEC 16056373 + 16056353 16056393 41 AGCATCCTGACGGATGCCACCATGGAGAAGCTGGCACTGGC AGTATCCTGACGGATGCCACCATGGAGAAGCTGGCACTGGC < 41bp 1 0.468183250057489 1 0.405333489179611 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16056373 chr1:16056355 synonymous SNV . 0 3 hm5C_associated_SNPs_46102 0 0 1 0 2 PLEKHM2 chr1:16056292 3'AG 16056292 Downstream 64bp
chr1 16056355 16056355 1 + C T UCEC 16056373 + 16056353 16056393 41 AGCATCCTGACGGATGCCACCATGGAGAAGCTGGCACTGGC AGTATCCTGACGGATGCCACCATGGAGAAGCTGGCACTGGC < 41bp 1 0.468183250057489 1 0.405333489179611 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16056373 chr1:16056355 synonymous SNV . 0 3 hm5C_associated_SNPs_46102 0 0 1 0 2 PLEKHM2 chr1:16056424 5'GT 16056424 Upstream 70bp
chr1 92769569 92769569 1 + C T UCEC 92769553 + 92769533 92769573 41 GGGGAGGTTCATTACACCTGCTCACTACAGTGATGTCGTGG GGGGAGGTTCATTACACCTGCTCACTACAGTGATGTTGTGG < 41bp 1 0.165011525533711 1 0.07647705078125 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPAP2 ENSG00000122484 CDS Human protein_coding chr1:92769553 chr1:92769569 synonymous SNV . 0 37 hm5C_associated_SNPs_46103 0 0 1 0 2 RPAP2 chr1:92769534 3'AG 92769534 Downstream 36bp
chr1 92769569 92769569 1 + C T UCEC 92769553 + 92769533 92769573 41 GGGGAGGTTCATTACACCTGCTCACTACAGTGATGTCGTGG GGGGAGGTTCATTACACCTGCTCACTACAGTGATGTTGTGG < 41bp 1 0.165011525533711 1 0.07647705078125 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPAP2 ENSG00000122484 CDS Human protein_coding chr1:92769553 chr1:92769569 synonymous SNV . 0 37 hm5C_associated_SNPs_46103 0 0 1 0 2 RPAP2 chr1:92769632 5'GT 92769632 Upstream 64bp
chr5 147817904 147817904 1 + G A UCEC 147817898 + 147817878 147817918 41 TTGTTTTCATTTTGTAGCTACCAGGTGCAGGGTACTAAAAC TTGTTTTCATTTTGTAGCTACCAGGTACAGGGTACTAAAAC < 41bp 1 0.126616051756935 1 0.125127643346786 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147817898 chr5:147817904 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_46104 0 0 0 0 1 FBXO38 chr5:147817895 3'AG 147817895 Downstream 10bp
chr3 50311228 50311228 1 + C T UCEC 50311248 + 50311228 50311268 41 CCGCTGCTCTATGCCGTCTTCTCCACGTCCAGGTGAGGGGC TCGCTGCTCTATGCCGTCTTCTCCACGTCCAGGTGAGGGGC < 41bp 1 0.723242190624467 1 0.977631628513336 experiment 0.553515618751065 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SEMA3B ENSG00000012171 ncRNA_exonic Human protein_coding chr3:50311248 chr3:50311228 . 0.003 3 1 hm5C_associated_SNPs_46105 0 0 1 0 3 SEMA3B chr3:50311175 3'AG 50311175 Downstream 54bp
chr3 50311228 50311228 1 + C T UCEC 50311248 + 50311228 50311268 41 CCGCTGCTCTATGCCGTCTTCTCCACGTCCAGGTGAGGGGC TCGCTGCTCTATGCCGTCTTCTCCACGTCCAGGTGAGGGGC < 41bp 1 0.723242190624467 1 0.977631628513336 experiment 0.553515618751065 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SEMA3B ENSG00000012171 ncRNA_exonic Human protein_coding chr3:50311248 chr3:50311228 . 0.003 3 1 hm5C_associated_SNPs_46105 0 0 1 0 3 SEMA3B chr3:50311190 3'AG 50311190 Downstream 39bp
chr3 50311228 50311228 1 + C T UCEC 50311248 + 50311228 50311268 41 CCGCTGCTCTATGCCGTCTTCTCCACGTCCAGGTGAGGGGC TCGCTGCTCTATGCCGTCTTCTCCACGTCCAGGTGAGGGGC < 41bp 1 0.723242190624467 1 0.977631628513336 experiment 0.553515618751065 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SEMA3B ENSG00000012171 ncRNA_exonic Human protein_coding chr3:50311248 chr3:50311228 . 0.003 3 1 hm5C_associated_SNPs_46105 0 0 1 0 3 SEMA3B chr3:50311259 5'GT 50311259 Upstream 32bp
chr16 12450123 12450123 1 + A T UCEC 12450135 + 12450115 12450155 41 GCTCATCGATCTCCGGGGACCGGTGAGTGTTTCCCCAACCC GCTCATCGTTCTCCGGGGACCGGTGAGTGTTTCCCCAACCC < 41bp 1 0.399548645372778 1 0.508951961994171 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12450135 chr16:12450123 nonsynonymous SNV 0.873 2 9 hm5C_associated_SNPs_46106 0 0 1 0 1 SNX29 chr16:12450136 5'GT 12450136 Upstream 14bp
chr19 14561806 14561806 1 + G A UCEC 14561797 + 14561777 14561817 41 GGGGAGCTGCCCGCCGACCACCCCAAGGGGCGGCTGCTGCG GGGGAGCTGCCCGCCGACCACCCCAAGGGACGGCTGCTGCG < 41bp 1 0.6558514026392 1 0.761036038398743 experiment 0.688297194721599 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14561797 chr19:14561806 synonymous SNV . 0 30 hm5C_associated_SNPs_46107 0 0 1 0 1 PKN1 chr19:14561708 3'AG 14561708 Downstream 99bp
chr17 8192656 8192656 1 + A G UCEC 8192673 + 8192653 8192693 41 AGAACCTGGCCCTGAGGGGCCGCTGTCAAGAAGCCTGGGTC AGAGCCTGGCCCTGAGGGGCCGCTGTCAAGAAGCCTGGGTC < 41bp 1 0.480380758340732 1 0.352684706449509 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RANGRF ENSG00000108961 CDS Human protein_coding chr17:8192673 chr17:8192656 nonsynonymous SNV 0.791 0 4 hm5C_associated_SNPs_46108 0 0 1 0 2 RANGRF chr17:8192576 3'AG 8192576 Downstream 81bp
chr17 8192656 8192656 1 + A G UCEC 8192673 + 8192653 8192693 41 AGAACCTGGCCCTGAGGGGCCGCTGTCAAGAAGCCTGGGTC AGAGCCTGGCCCTGAGGGGCCGCTGTCAAGAAGCCTGGGTC < 41bp 1 0.480380758340732 1 0.352684706449509 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RANGRF ENSG00000108961 CDS Human protein_coding chr17:8192673 chr17:8192656 nonsynonymous SNV 0.791 0 4 hm5C_associated_SNPs_46108 0 0 1 0 2 RANGRF chr17:8192732 5'GT 8192732 Upstream 77bp
chr7 150761787 150761787 1 + C T UCEC 150761806 + 150761786 150761826 41 GCCAGCGAGGCTGAGGGGGCCCGGGCTCTCACTCAGCCGTC GTCAGCGAGGCTGAGGGGGCCCGGGCTCTCACTCAGCCGTC < 41bp 1 0.566024325606831 1 0.439417093992233 experiment 0.867951348786339 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150761806 chr7:150761787 nonsynonymous SNV 0.154 0 2 hm5C_associated_SNPs_46109 0 0 1 0 1 SLC4A2 chr7:150761854 5'GT 150761854 Upstream 68bp
chr9 139733447 139733447 1 + C T UCEC 139733467 + 139733447 139733487 41 CGCTGCCTGCAGGCCCCGTCCCCAGTCAAGACATCACTCTT TGCTGCCTGCAGGCCCCGTCCCCAGTCAAGACATCACTCTT < 41bp 1 0.188669427354359 1 0.303894519805908 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139733467 chr9:139733447 nonsynonymous SNV 0.002 0 1 hm5C_associated_SNPs_46110 0 0 1 0 1 RABL6 chr9:139733361 3'AG 139733361 Downstream 87bp
chr3 142756136 142756136 1 + T C UCEC 142756138 + 142756118 142756158 41 TCGATGATCTTGATGGAGTCCCTATAAAAAGTCTTGATGAT TCGATGATCTTGATGGAGCCCCTATAAAAAGTCTTGATGAT < 41bp 1 0.0495306097309445 1 0.0622395575046539 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2SURP ENSG00000163714 CDS Human protein_coding chr3:142756138 chr3:142756136 nonsynonymous SNV 1.000 3 19 hm5C_associated_SNPs_46111 0 0 1 0 1 U2SURP chr3:142756177 5'GT 142756177 Upstream 42bp
chr3 142756136 142756136 1 + T C UCEC 142756139 + 142756119 142756159 41 CGATGATCTTGATGGAGTCCCTATAAAAAGTCTTGATGATG CGATGATCTTGATGGAGCCCCTATAAAAAGTCTTGATGATG < 41bp 1 0.239219723408455 1 0.251822710037231 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2SURP ENSG00000163714 CDS Human protein_coding chr3:142756139 chr3:142756136 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_46112 0 0 1 0 1 U2SURP chr3:142756177 5'GT 142756177 Upstream 42bp
chr16 72141609 72141609 1 + C T UCEC 72141626 + 72141606 72141646 41 ATGCTCATCGTGTCCTGTGACATGGGCTGCAGCTCCGAGAT ATGTTCATCGTGTCCTGTGACATGGGCTGCAGCTCCGAGAT < 41bp 1 0.699526025786557 1 0.269682705402374 experiment 0.600947948426885 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72141626 chr16:72141609 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_46113 0 0 1 0 2 DHX38 chr16:72141544 3'AG 72141544 Downstream 66bp
chr16 72141609 72141609 1 + C T UCEC 72141626 + 72141606 72141646 41 ATGCTCATCGTGTCCTGTGACATGGGCTGCAGCTCCGAGAT ATGTTCATCGTGTCCTGTGACATGGGCTGCAGCTCCGAGAT < 41bp 1 0.699526025786557 1 0.269682705402374 experiment 0.600947948426885 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72141626 chr16:72141609 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_46113 0 0 1 0 2 DHX38 chr16:72141698 5'GT 72141698 Upstream 90bp
chr17 4859388 4859388 1 + T C UCEC 4859378 + 4859358 4859398 41 CCAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA CCAGGCCGTTGAGAAGAAGGCCTGCAACTGCCTGCTGCTGA < 41bp 1 0.170686511366857 1 0.042637437582016 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859378 chr17:4859388 synonymous SNV . 0 31 hm5C_associated_SNPs_46114 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 27bp
chr17 4859388 4859388 1 + T C UCEC 4859378 + 4859358 4859398 41 CCAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA CCAGGCCGTTGAGAAGAAGGCCTGCAACTGCCTGCTGCTGA < 41bp 1 0.170686511366857 1 0.042637437582016 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859378 chr17:4859388 synonymous SNV . 0 31 hm5C_associated_SNPs_46114 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 51bp
chr17 4859388 4859388 1 + T C UCEC 4859379 + 4859359 4859399 41 CAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAA CAGGCCGTTGAGAAGAAGGCCTGCAACTGCCTGCTGCTGAA < 41bp 1 0.783473896587954 1 0.106052607297897 experiment 0.433052206824092 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859379 chr17:4859388 synonymous SNV . 0 30 hm5C_associated_SNPs_46115 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 27bp
chr17 4859388 4859388 1 + T C UCEC 4859379 + 4859359 4859399 41 CAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAA CAGGCCGTTGAGAAGAAGGCCTGCAACTGCCTGCTGCTGAA < 41bp 1 0.783473896587954 1 0.106052607297897 experiment 0.433052206824092 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859379 chr17:4859388 synonymous SNV . 0 30 hm5C_associated_SNPs_46115 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 51bp
chr17 4859388 4859388 1 + T C UCEC 4859382 + 4859362 4859402 41 GCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGT GCCGTTGAGAAGAAGGCCTGCAACTGCCTGCTGCTGAAGGT < 41bp 1 0.414012285923029 1 0.103122055530548 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859382 chr17:4859388 synonymous SNV . 0 27 hm5C_associated_SNPs_46116 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 27bp
chr17 4859388 4859388 1 + T C UCEC 4859382 + 4859362 4859402 41 GCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGT GCCGTTGAGAAGAAGGCCTGCAACTGCCTGCTGCTGAAGGT < 41bp 1 0.414012285923029 1 0.103122055530548 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859382 chr17:4859388 synonymous SNV . 0 27 hm5C_associated_SNPs_46116 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 51bp
chr17 4859388 4859388 1 + T C UCEC 4859385 + 4859365 4859405 41 GTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAA GTTGAGAAGAAGGCCTGCAACTGCCTGCTGCTGAAGGTCAA < 41bp 1 0.69277723306817 1 0.265213936567307 experiment 0.614445533863659 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859385 chr17:4859388 synonymous SNV . 0 24 hm5C_associated_SNPs_46117 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 27bp
chr17 4859388 4859388 1 + T C UCEC 4859385 + 4859365 4859405 41 GTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAA GTTGAGAAGAAGGCCTGCAACTGCCTGCTGCTGAAGGTCAA < 41bp 1 0.69277723306817 1 0.265213936567307 experiment 0.614445533863659 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859385 chr17:4859388 synonymous SNV . 0 24 hm5C_associated_SNPs_46117 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 51bp
chr17 4859388 4859388 1 + T C UCEC 4859389 + 4859369 4859409 41 AGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAG AGAAGAAGGCCTGCAACTGCCTGCTGCTGAAGGTCAACCAG < 41bp 1 0.734692643635775 1 0.386936128139496 experiment 0.53061471272845 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859389 chr17:4859388 synonymous SNV . 0 20 hm5C_associated_SNPs_46118 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 27bp
chr17 4859388 4859388 1 + T C UCEC 4859389 + 4859369 4859409 41 AGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAG AGAAGAAGGCCTGCAACTGCCTGCTGCTGAAGGTCAACCAG < 41bp 1 0.734692643635775 1 0.386936128139496 experiment 0.53061471272845 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859389 chr17:4859388 synonymous SNV . 0 20 hm5C_associated_SNPs_46118 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 51bp
chr17 4859388 4859388 1 + T C UCEC 4859392 + 4859372 4859412 41 AGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAGATC AGAAGGCCTGCAACTGCCTGCTGCTGAAGGTCAACCAGATC < 41bp 1 0.357244872198484 1 0.294537276029587 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859392 chr17:4859388 synonymous SNV . 0 17 hm5C_associated_SNPs_46119 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 27bp
chr17 4859388 4859388 1 + T C UCEC 4859392 + 4859372 4859412 41 AGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAGATC AGAAGGCCTGCAACTGCCTGCTGCTGAAGGTCAACCAGATC < 41bp 1 0.357244872198484 1 0.294537276029587 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859392 chr17:4859388 synonymous SNV . 0 17 hm5C_associated_SNPs_46119 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 51bp
chr17 4859388 4859388 1 + T C UCEC 4859403 + 4859383 4859423 41 AACTGTCTGCTGCTGAAGGTCAACCAGATCGGCTCGGTGAC AACTGCCTGCTGCTGAAGGTCAACCAGATCGGCTCGGTGAC < 41bp 1 0.406448967072482 1 0.269271373748779 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859403 chr17:4859388 synonymous SNV . 0 6 hm5C_associated_SNPs_46120 0 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 27bp
chr17 4859388 4859388 1 + T C UCEC 4859403 + 4859383 4859423 41 AACTGTCTGCTGCTGAAGGTCAACCAGATCGGCTCGGTGAC AACTGCCTGCTGCTGAAGGTCAACCAGATCGGCTCGGTGAC < 41bp 1 0.406448967072482 1 0.269271373748779 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859403 chr17:4859388 synonymous SNV . 0 6 hm5C_associated_SNPs_46120 0 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 51bp
chr19 39215148 39215148 1 + C T UCEC 39215157 + 39215137 39215177 41 GAGCACCTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGT GAGCACCTGCGTCGCCAGTTCGCCAGCCAGGCCAATGTTGT < 41bp 1 0.727059143272227 1 0.781144142150879 experiment 0.545881713455546 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215157 chr19:39215148 synonymous SNV . 0 12 hm5C_associated_SNPs_46123 0 0 1 0 2 ACTN4 chr19:39215071 3'AG 39215071 Downstream 78bp
chr19 39215148 39215148 1 + C T UCEC 39215157 + 39215137 39215177 41 GAGCACCTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGT GAGCACCTGCGTCGCCAGTTCGCCAGCCAGGCCAATGTTGT < 41bp 1 0.727059143272227 1 0.781144142150879 experiment 0.545881713455546 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215157 chr19:39215148 synonymous SNV . 0 12 hm5C_associated_SNPs_46123 0 0 1 0 2 ACTN4 chr19:39215205 5'GT 39215205 Upstream 58bp
chr19 39215148 39215148 1 + C T UCEC 39215163 + 39215143 39215183 41 CTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC CTGCGTCGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC < 41bp 1 0.320326227407303 1 0.649632692337036 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215163 chr19:39215148 synonymous SNV . 0 6 hm5C_associated_SNPs_46124 0 0 1 0 2 ACTN4 chr19:39215071 3'AG 39215071 Downstream 78bp
chr19 39215148 39215148 1 + C T UCEC 39215163 + 39215143 39215183 41 CTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC CTGCGTCGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC < 41bp 1 0.320326227407303 1 0.649632692337036 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215163 chr19:39215148 synonymous SNV . 0 6 hm5C_associated_SNPs_46124 0 0 1 0 2 ACTN4 chr19:39215205 5'GT 39215205 Upstream 58bp
chr17 27027976 27027976 1 + C T UCEC 27027991 + 27027971 27028011 41 CCAGCCCAGCAGCCAGTGGCCACACCACTAATGACCCCTAG CCAGCTCAGCAGCCAGTGGCCACACCACTAATGACCCCTAG < 41bp 1 0.250624687371052 1 0.48588690161705 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27027991 chr17:27027976 synonymous SNV . 0 6 hm5C_associated_SNPs_46125 0 0 1 0 1 SUPT6H chr17:27027959 3'AG 27027959 Downstream 18bp
chr19 1041938 1041938 1 + A G UCEC 1041928 + 1041908 1041948 41 CCTGCTTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGC CCTGCTTTCCGCAGCTGACACCGGGCGAGGGGCCCGGGCGC < 41bp 1 0.608744104819684 1 0.898197889328003 experiment 0.782511790360632 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041928 chr19:1041938 nonsynonymous SNV 0.027 1 31 hm5C_associated_SNPs_46126 0 0 0 0 1 ABCA7 chr19:1041971 5'GT 1041971 Upstream 34bp
chr19 1041938 1041938 1 + A G UCEC 1041929 + 1041909 1041949 41 CTGCTTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGCC CTGCTTTCCGCAGCTGACACCGGGCGAGGGGCCCGGGCGCC < 41bp 1 0.437900133520648 1 0.936896204948425 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041929 chr19:1041938 nonsynonymous SNV 0.027 1 30 hm5C_associated_SNPs_46127 0 0 0 0 1 ABCA7 chr19:1041971 5'GT 1041971 Upstream 34bp
chr19 1041938 1041938 1 + A G UCEC 1041933 + 1041913 1041953 41 TTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGCCTGAG TTTCCGCAGCTGACACCGGGCGAGGGGCCCGGGCGCCTGAG < 41bp 1 0.563724175143559 1 0.888174772262573 experiment 0.872551649712881 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041933 chr19:1041938 nonsynonymous SNV 0.027 1 26 hm5C_associated_SNPs_46128 0 0 0 0 1 ABCA7 chr19:1041971 5'GT 1041971 Upstream 34bp
chr19 1041938 1041938 1 + A G UCEC 1041940 + 1041920 1041960 41 AGCTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTC AGCTGACACCGGGCGAGGGGCCCGGGCGCCTGAGCAACTTC < 41bp 1 0.284473123067493 1 0.4369897544384 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041940 chr19:1041938 nonsynonymous SNV 0.027 1 19 hm5C_associated_SNPs_46129 0 0 0 0 1 ABCA7 chr19:1041971 5'GT 1041971 Upstream 34bp
chr19 1041938 1041938 1 + A G UCEC 1041941 + 1041921 1041961 41 GCTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCA GCTGACACCGGGCGAGGGGCCCGGGCGCCTGAGCAACTTCA < 41bp 1 0.294812034733396 1 0.785524964332581 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041941 chr19:1041938 nonsynonymous SNV 0.027 1 18 hm5C_associated_SNPs_46130 0 0 0 0 1 ABCA7 chr19:1041971 5'GT 1041971 Upstream 34bp
chr19 1041938 1041938 1 + A G UCEC 1041942 + 1041922 1041962 41 CTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCAA CTGACACCGGGCGAGGGGCCCGGGCGCCTGAGCAACTTCAA < 41bp 1 0.391145769215714 1 0.826939940452576 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041942 chr19:1041938 nonsynonymous SNV 0.027 1 17 hm5C_associated_SNPs_46131 0 0 0 0 1 ABCA7 chr19:1041971 5'GT 1041971 Upstream 34bp
chr4 57881730 57881730 1 + T C UCEC 57881714 + 57881694 57881734 41 GAGGGAGATTCGGATCTATACGGATGCAGGCCGTATTTGTA GAGGGAGATTCGGATCTATACGGATGCAGGCCGTATCTGTA < 41bp 1 0.643195810180705 1 0.807084798812866 experiment 0.713608379638589 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57881714 chr4:57881730 synonymous SNV . 0 37 hm5C_associated_SNPs_46132 0 0 1 0 2 POLR2B chr4:57881668 3'AG 57881668 Downstream 63bp
chr4 57881730 57881730 1 + T C UCEC 57881714 + 57881694 57881734 41 GAGGGAGATTCGGATCTATACGGATGCAGGCCGTATTTGTA GAGGGAGATTCGGATCTATACGGATGCAGGCCGTATCTGTA < 41bp 1 0.643195810180705 1 0.807084798812866 experiment 0.713608379638589 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57881714 chr4:57881730 synonymous SNV . 0 37 hm5C_associated_SNPs_46132 0 0 1 0 2 POLR2B chr4:57881822 5'GT 57881822 Upstream 93bp
chr7 73731886 73731886 1 + C T UCEC 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AAGTCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA < 41bp 1 0.261325482283838 1 0.161926180124283 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731886 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_46134 0 0 0 0 1 CLIP2 chr7:73731810 3'AG 73731810 Downstream 77bp
chr7 73731886 73731886 1 + C T UCEC 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC AGTCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC < 41bp 1 0.458614877164275 1 0.423662096261978 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731886 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_46135 0 0 0 0 1 CLIP2 chr7:73731810 3'AG 73731810 Downstream 77bp
chr7 73731886 73731886 1 + C T UCEC 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT GTCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT < 41bp 1 0.167319645047172 1 0.460846960544586 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731886 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_46136 0 0 0 0 1 CLIP2 chr7:73731810 3'AG 73731810 Downstream 77bp
chr7 73731886 73731886 1 + C T UCEC 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC TCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC < 41bp 1 0.396533406065854 1 0.489603668451309 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731886 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_46137 0 0 0 0 1 CLIP2 chr7:73731810 3'AG 73731810 Downstream 77bp
chr2 216190004 216190004 1 + G A UCEC 216190020 + 216190000 216190040 41 AGTGGCTTCTCCAGGTGTAACTGTTGAGGAGGCTGTGGAGC AGTGACTTCTCCAGGTGTAACTGTTGAGGAGGCTGTGGAGC < 41bp 1 0.355432496085808 1 0.170648664236069 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216190020 chr2:216190004 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_46138 0 0 1 0 1 ATIC chr2:216190052 5'GT 216190052 Upstream 49bp
chr20 3520913 3520913 1 + A G UCEC 3520926 + 3520906 3520946 41 GCTACAGAGTGTAGTTGGGACCATTTATATGTTTATGATGG GCTACAGGGTGTAGTTGGGACCATTTATATGTTTATGATGG < 41bp 1 0.0245581616859226 1 0.15489250421524 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATRN ENSG00000088812 CDS Human protein_coding chr20:3520926 chr20:3520913 nonsynonymous SNV 0.998 4 8 hm5C_associated_SNPs_46139 0 0 1 0 2 ATRN chr20:3520869 3'AG 3520869 Downstream 45bp
chr20 3520913 3520913 1 + A G UCEC 3520926 + 3520906 3520946 41 GCTACAGAGTGTAGTTGGGACCATTTATATGTTTATGATGG GCTACAGGGTGTAGTTGGGACCATTTATATGTTTATGATGG < 41bp 1 0.0245581616859226 1 0.15489250421524 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATRN ENSG00000088812 CDS Human protein_coding chr20:3520926 chr20:3520913 nonsynonymous SNV 0.998 4 8 hm5C_associated_SNPs_46139 0 0 1 0 2 ATRN chr20:3520982 5'GT 3520982 Upstream 70bp
chr21 46900031 46900031 1 + T C UCEC 46900048 + 46900028 46900068 41 GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACGACAAGC GCCCCCAGGGCCCCCAGGACCCTCCTTCAGACACGACAAGC < 41bp 1 0.0539599184222563 1 0.054591178894043 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900048 chr21:46900031 synonymous SNV . 0 4 hm5C_associated_SNPs_46140 0 0 1 0 2 COL18A1 chr21:46899984 3'AG 46899984 Downstream 48bp
chr21 46900031 46900031 1 + T C UCEC 46900048 + 46900028 46900068 41 GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACGACAAGC GCCCCCAGGGCCCCCAGGACCCTCCTTCAGACACGACAAGC < 41bp 1 0.0539599184222563 1 0.054591178894043 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900048 chr21:46900031 synonymous SNV . 0 4 hm5C_associated_SNPs_46140 0 0 1 0 2 COL18A1 chr21:46900070 5'GT 46900070 Upstream 40bp
chr19 10789836 10789836 1 + C G UCEC 10789854 + 10789834 10789874 41 CTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG CTGGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG < 41bp 1 0.0834231227477826 1 0.0759552419185638 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789854 chr19:10789836 nonsynonymous SNV 0.869 4 3 hm5C_associated_SNPs_46142 0 0 1 0 2 ILF3 chr19:10789773 3'AG 10789773 Downstream 64bp
chr19 10789836 10789836 1 + C G UCEC 10789854 + 10789834 10789874 41 CTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG CTGGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG < 41bp 1 0.0834231227477826 1 0.0759552419185638 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789854 chr19:10789836 nonsynonymous SNV 0.869 4 3 hm5C_associated_SNPs_46142 0 0 1 0 2 ILF3 chr19:10789868 5'GT 10789868 Upstream 33bp
chr19 10789836 10789836 1 + C G UCEC 10789855 + 10789835 10789875 41 TCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC TGGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC < 41bp 1 0.0349649937452581 1 0.173125296831131 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789855 chr19:10789836 nonsynonymous SNV 0.869 4 2 hm5C_associated_SNPs_46143 0 0 1 0 2 ILF3 chr19:10789773 3'AG 10789773 Downstream 64bp
chr19 10789836 10789836 1 + C G UCEC 10789855 + 10789835 10789875 41 TCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC TGGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC < 41bp 1 0.0349649937452581 1 0.173125296831131 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789855 chr19:10789836 nonsynonymous SNV 0.869 4 2 hm5C_associated_SNPs_46143 0 0 1 0 2 ILF3 chr19:10789868 5'GT 10789868 Upstream 33bp
chr10 72324235 72324235 1 + C G UCEC 72324236 + 72324216 72324256 41 TACCTCCACCTGGAGAAGGCCGACTCCTGGCAGAGGCCCTT TACCTCCACCTGGAGAAGGGCGACTCCTGGCAGAGGCCCTT < 41bp 1 0.161225133771313 1 0.377938866615295 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72324236 chr10:72324235 nonsynonymous SNV 0.075 1 20 hm5C_associated_SNPs_46146 0 0 0 0 1 PALD1 chr10:72324275 5'GT 72324275 Upstream 41bp
chr17 79668142 79668142 1 + A G UCEC 79668148 + 79668128 79668168 41 CTACATCGCGGGGCAGCAGCCCATGTACCAGCAGGTGAGCC CTACATCGCGGGGCGGCAGCCCATGTACCAGCAGGTGAGCC < 41bp 1 0.210646027932448 1 0.715174078941345 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79668148 chr17:79668142 nonsynonymous SNV 0.985 2 15 hm5C_associated_SNPs_46147 0 0 1 0 2 HGS chr17:79668075 3'AG 79668075 Downstream 68bp
chr17 79668142 79668142 1 + A G UCEC 79668148 + 79668128 79668168 41 CTACATCGCGGGGCAGCAGCCCATGTACCAGCAGGTGAGCC CTACATCGCGGGGCGGCAGCCCATGTACCAGCAGGTGAGCC < 41bp 1 0.210646027932448 1 0.715174078941345 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79668148 chr17:79668142 nonsynonymous SNV 0.985 2 15 hm5C_associated_SNPs_46147 0 0 1 0 2 HGS chr17:79668161 5'GT 79668161 Upstream 20bp
chr19 541405 541405 1 + C T UCEC 541393 + 541373 541413 41 CGTGACGGCGTGAAGGTGCCCACCACGCTGGCCGAGTACTG CGTGACGGCGTGAAGGTGCCCACCACGCTGGCTGAGTACTG < 41bp 1 0.765504677197585 1 0.129822313785553 experiment 0.468990645604831 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC34 ENSG00000099804 CDS Human protein_coding chr19:541393 chr19:541405 synonymous SNV . 0 33 hm5C_associated_SNPs_46148 0 0 1 0 1 CDC34 chr19:541339 3'AG 541339 Downstream 67bp
chr21 46897362 46897362 1 + G T UCEC 46897353 + 46897333 46897373 41 CTTCCTGGCTCAGATTCTGTCTCCACGTGGGACGGGAGTGT CTTCCTGGCTCAGATTCTGTCTCCACGTGTGACGGGAGTGT < 41bp 1 0.432188637537067 1 0.958520412445068 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46897353 chr21:46897362 nonsynonymous SNV 0.025 2 30 hm5C_associated_SNPs_46150 0 0 1 0 2 COL18A1 chr21:46897325 3'AG 46897325 Downstream 38bp
chr21 46897362 46897362 1 + G T UCEC 46897353 + 46897333 46897373 41 CTTCCTGGCTCAGATTCTGTCTCCACGTGGGACGGGAGTGT CTTCCTGGCTCAGATTCTGTCTCCACGTGTGACGGGAGTGT < 41bp 1 0.432188637537067 1 0.958520412445068 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46897353 chr21:46897362 nonsynonymous SNV 0.025 2 30 hm5C_associated_SNPs_46150 0 0 1 0 2 COL18A1 chr21:46897401 5'GT 46897401 Upstream 40bp
chr16 697459 697459 1 + G A UCEC 697463 + 697443 697483 41 GTGTGAATGGCCGGCGGGCCCCCTCCACGTCCCCATCCTTC GTGTGAATGGCCGGCGAGCCCCCTCCACGTCCCCATCCTTC < 41bp 1 0.151075399504603 1 0.119146078824997 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MCRIP2 ENSG00000172366 CDS Human protein_coding chr16:697463 chr16:697459 synonymous SNV . 0 17 hm5C_associated_SNPs_46152 0 0 1 0 1 MCRIP2 chr16:697417 3'AG 697417 Downstream 43bp
chr19 36128137 36128137 1 + C T UCEC 36128142 + 36128122 36128162 41 GCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCCAAGGTGAT GCCTTCAGCCGCTTCTCATCCTTCCTTAAGGCCAAGGTGAT < 41bp 1 0.194566997481515 1 0.418761104345322 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36128142 chr19:36128137 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_46153 0 0 1 0 1 RBM42 chr19:36128060 3'AG 36128060 Downstream 78bp
chr15 39876553 39876553 1 + A G UCEC 39876541 + 39876521 39876561 41 GGCCAATGAGCTGAGGCGGCCTCCCCTATGCTATCACAACG GGCCAATGAGCTGAGGCGGCCTCCCCTATGCTGTCACAACG < 41bp 1 0.179570611832404 1 0.319289863109589 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control THBS1 ENSG00000137801 CDS Human protein_coding chr15:39876541 chr15:39876553 nonsynonymous SNV 0.994 1 33 hm5C_associated_SNPs_46154 0 0 1 0 2 THBS1 chr15:39876501 3'AG 39876501 Downstream 53bp
chr15 39876553 39876553 1 + A G UCEC 39876541 + 39876521 39876561 41 GGCCAATGAGCTGAGGCGGCCTCCCCTATGCTATCACAACG GGCCAATGAGCTGAGGCGGCCTCCCCTATGCTGTCACAACG < 41bp 1 0.179570611832404 1 0.319289863109589 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control THBS1 ENSG00000137801 CDS Human protein_coding chr15:39876541 chr15:39876553 nonsynonymous SNV 0.994 1 33 hm5C_associated_SNPs_46154 0 0 1 0 2 THBS1 chr15:39876623 5'GT 39876623 Upstream 71bp
chr14 64990099 64990099 1 + A G UCEC 64990092 + 64990072 64990112 41 GAGAGCGTCAGTTGCGACTGCACAATGATATGCACAAAGGC GAGAGCGTCAGTTGCGACTGCACAATGGTATGCACAAAGGC < 41bp 1 0.676987772192 1 0.675002694129944 experiment 0.646024455616 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZBTB1 ENSG00000126804 CDS Human protein_coding chr14:64990092 chr14:64990099 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_46155 0 0 0 0 1 ZBTB1 chr14:64990120 5'GT 64990120 Upstream 22bp
chr7 142991775 142991775 1 + G A UCEC 142991795 + 142991775 142991815 41 GCTCTGGAGGGGATGTGGACCACAGTACTCTAGTCACCCTC ACTCTGGAGGGGATGTGGACCACAGTACTCTAGTCACCCTC < 41bp 1 0.784212270591202 1 0.612653374671936 experiment 0.431575458817596 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CASP2 ENSG00000106144 CDS Human protein_coding chr7:142991795 chr7:142991775 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_46156 0 0 1 0 2 CASP2 chr7:142991690 3'AG 142991690 Downstream 86bp
chr7 142991775 142991775 1 + G A UCEC 142991795 + 142991775 142991815 41 GCTCTGGAGGGGATGTGGACCACAGTACTCTAGTCACCCTC ACTCTGGAGGGGATGTGGACCACAGTACTCTAGTCACCCTC < 41bp 1 0.784212270591202 1 0.612653374671936 experiment 0.431575458817596 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CASP2 ENSG00000106144 CDS Human protein_coding chr7:142991795 chr7:142991775 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_46156 0 0 1 0 2 CASP2 chr7:142991866 5'GT 142991866 Upstream 92bp
chr4 144442689 144442689 1 + G A UCEC 144442679 + 144442659 144442699 41 TCAGAAGACTCCAACTTCACCTTTGAAGATGAAACCAGGGC TCAGAAGACTCCAACTTCACCTTTGAAGATAAAACCAGGGC < 41bp 1 0.142531759980697 1 0.0569127202033997 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SMARCA5 ENSG00000153147 CDS Human protein_coding chr4:144442679 chr4:144442689 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_46157 0 0 1 0 1 SMARCA5 chr4:144442748 5'GT 144442748 Upstream 60bp
chrX 48564950 48564950 1 + G T UCEC 48564940 + 48564920 48564960 41 TCATAGACAACCTTGACGAGCGGCTGCCCCGCATCGCTTTC TCATAGACAACCTTGACGAGCGGCTGCCCCTCATCGCTTTC < 41bp 1 0.369826935201929 1 0.153729259967804 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SUV39H1 ENSG00000101945 CDS Human protein_coding chrX:48564940 chrX:48564950 nonsynonymous SNV 0.163 3 31 hm5C_associated_SNPs_46158 0 0 1 0 1 SUV39H1 chrX:48565018 5'GT 48565018 Upstream 69bp
chr15 81221511 81221511 1 + G T UCEC 81221501 + 81221481 81221521 41 TTGGACCATAGCGGAAGGACCCTCCCTATAGGCCAGTAGGT TTGGACCATAGCGGAAGGACCCTCCCTATATGCCAGTAGGT < 41bp 1 0.0134894098352 1 0.0606480538845062 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81221501 chr15:81221511 nonsynonymous SNV 0.990 3 31 hm5C_associated_SNPs_46162 0 0 1 0 1 CEMIP chr15:81221515 5'GT 81221515 Upstream 5bp
chr15 81221511 81221511 1 + G T UCEC 81221505 + 81221485 81221525 41 ACCATAGCGGAAGGACCCTCCCTATAGGCCAGTAGGTTTGC ACCATAGCGGAAGGACCCTCCCTATATGCCAGTAGGTTTGC < 41bp 1 0.0319974503384934 1 0.28072589635849 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81221505 chr15:81221511 nonsynonymous SNV 0.990 3 27 hm5C_associated_SNPs_46163 0 0 1 0 1 CEMIP chr15:81221515 5'GT 81221515 Upstream 5bp
chr20 62904594 62904594 1 + C A UCEC 62904609 + 62904589 62904629 41 GCAGCCTCCAGGACTTGGCTCGCATCGCCATCCGGGGCACC GCAGCATCCAGGACTTGGCTCGCATCGCCATCCGGGGCACC < 41bp 1 0.398631438528777 1 0.0248070955276489 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCMTD2 ENSG00000203880 CDS Human protein_coding chr20:62904609 chr20:62904594 nonsynonymous SNV 0.886 4 6 hm5C_associated_SNPs_46164 0 0 1 0 1 PCMTD2 chr20:62904574 3'AG 62904574 Downstream 21bp
chr1 117638858 117638858 1 + C A UCEC 117638864 + 117638844 117638884 41 GCCACCATCGATGGCTCTGTCAATCCCAAGCAGAGAATGGA GCCACCATCGATGGATCTGTCAATCCCAAGCAGAGAATGGA < 41bp 1 0.122863185623703 1 0.201146602630615 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117638864 chr1:117638858 synonymous SNV . 0 15 hm5C_associated_SNPs_46168 0 0 1 0 1 TTF2 chr1:117638921 5'GT 117638921 Upstream 64bp
chr1 117638858 117638858 1 + C A UCEC 117638868 + 117638848 117638888 41 CCATCGATGGCTCTGTCAATCCCAAGCAGAGAATGGACTTG CCATCGATGGATCTGTCAATCCCAAGCAGAGAATGGACTTG < 41bp 1 0.676367325271607 1 0.169641822576523 experiment 0.647265349456785 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117638868 chr1:117638858 synonymous SNV . 0 11 hm5C_associated_SNPs_46169 0 0 1 0 1 TTF2 chr1:117638921 5'GT 117638921 Upstream 64bp
chr2 233697633 233697633 1 + C T UCEC 233697652 + 233697632 233697672 41 GCTGCGGATGGAAGAGGAGGCAGCCAGACTCCGGCATGAGG GTTGCGGATGGAAGAGGAGGCAGCCAGACTCCGGCATGAGG < 41bp 1 0.297932872510288 1 0.304704129695892 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233697652 chr2:233697633 synonymous SNV . 0 2 hm5C_associated_SNPs_46170 0 0 1 0 1 GIGYF2 chr2:233697567 3'AG 233697567 Downstream 67bp
chr17 7814173 7814173 1 + G A UCEC 7814192 + 7814172 7814212 41 CGCCGGGTCCCTACGCTACACCTCCGGGGTACGGGGCGGCC CACCGGGTCCCTACGCTACACCTCCGGGGTACGGGGCGGCC < 41bp 1 0.0959590763844673 1 0.0334808826446533 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7814192 chr17:7814173 nonsynonymous SNV 0.998 0 2 hm5C_associated_SNPs_46171 0 0 1 0 1 CHD3 chr17:7814165 3'AG 7814165 Downstream 9bp
chr9 71851980 71851980 1 + C A UCEC 71851967 + 71851947 71851987 41 AGGTCTGGGGTGAAGAAGAACCTGAGGAAAAGTCGGGAAGA AGGTCTGGGGTGAAGAAGAACCTGAGGAAAAGTAGGGAAGA < 41bp 1 0.406090835946098 1 0.200028032064438 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TJP2 ENSG00000119139 CDS Human protein_coding chr9:71851967 chr9:71851980 synonymous SNV . 0 34 hm5C_associated_SNPs_46178 0 0 1 0 1 TJP2 chr9:71852052 5'GT 71852052 Upstream 73bp
chr9 71851980 71851980 1 + C A UCEC 71851968 + 71851948 71851988 41 GGTCTGGGGTGAAGAAGAACCTGAGGAAAAGTCGGGAAGAC GGTCTGGGGTGAAGAAGAACCTGAGGAAAAGTAGGGAAGAC < 41bp 1 0.743642662206975 1 0.663187146186829 experiment 0.512714675586051 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TJP2 ENSG00000119139 CDS Human protein_coding chr9:71851968 chr9:71851980 synonymous SNV . 0 33 hm5C_associated_SNPs_46179 0 0 1 0 1 TJP2 chr9:71852052 5'GT 71852052 Upstream 73bp
chr14 24909642 24909642 1 - G T UCEC 24909627 - 24909607 24909647 41 TTCGCCTGGGCCTGGGGGGCCCCATCGGCTCAGGCCACCAA TTCGCATGGGCCTGGGGGGCCCCATCGGCTCAGGCCACCAA < 41bp 1 0.350520900546347 1 0.182542055845261 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SDR39U1 ENSG00000100445 CDS Human protein_coding chr14:24909627 chr14:24909642 nonsynonymous SNV 0.998 3 6 hm5C_associated_SNPs_46180 0 0 1 0 1 SDR39U1 chr14:24909698 3'AG 24909698 Downstream 57bp
chr11 210617 210617 1 + G A UCEC 210603 + 210583 210623 41 CTTTACCGACACCTGGGGACCCTTCTCCGGCACTGTGTGAT CTTTACCGACACCTGGGGACCCTTCTCCGGCACTATGTGAT < 41bp 1 0.0119402413711057 1 0.064977765083313 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:210603 chr11:210617 nonsynonymous SNV 0.864 4 35 hm5C_associated_SNPs_46184 0 0 1 0 2 RIC8A chr11:210571 3'AG 210571 Downstream 47bp
chr11 210617 210617 1 + G A UCEC 210603 + 210583 210623 41 CTTTACCGACACCTGGGGACCCTTCTCCGGCACTGTGTGAT CTTTACCGACACCTGGGGACCCTTCTCCGGCACTATGTGAT < 41bp 1 0.0119402413711057 1 0.064977765083313 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:210603 chr11:210617 nonsynonymous SNV 0.864 4 35 hm5C_associated_SNPs_46184 0 0 1 0 2 RIC8A chr11:210662 5'GT 210662 Upstream 46bp
chr2 27900707 27900707 1 + G T UCEC 27900703 + 27900683 27900723 41 TGTCCCGGAAGAAACTTCACCTGAGAACTTTTGAACTGAGG TGTCCCGGAAGAAACTTCACCTGATAACTTTTGAACTGAGG < 41bp 1 0.142343719368489 1 0.325240135192871 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27900703 chr2:27900707 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_46186 0 0 1 0 1 SLC4A1AP chr2:27900791 5'GT 27900791 Upstream 85bp
chr6 44274727 44274727 1 - G A UCEC 44274726 - 44274706 44274746 41 CGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC CGTCGAGCTGTGCGTTTCTTCATGGAGATCTTAAAGGCACC < 41bp 1 0.58421961217042 1 0.748215079307556 experiment 0.83156077565916 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human protein_coding chr6:44274726 chr6:44274727 stopgain 0.135 2 20 hm5C_associated_SNPs_46187 0 0 1 0 2 AARS2 chr6:44274660 5'GT 44274660 Upstream 68bp
chr6 44274727 44274727 1 - G A UCEC 44274726 - 44274706 44274746 41 CGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC CGTCGAGCTGTGCGTTTCTTCATGGAGATCTTAAAGGCACC < 41bp 1 0.58421961217042 1 0.748215079307556 experiment 0.83156077565916 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human other chr6:44274726 chr6:44274727 stopgain 0.135 2 20 hm5C_associated_SNPs_46187 0 0 1 0 2 AARS2 chr6:44274768 3'AG 44274768 Downstream 42bp
chr11 71209484 71209484 1 + G T UCEC 71209490 + 71209470 71209510 41 GCGTACCACGCCGAGAACTACAGCCCTGAGGACAACAGGTT GCGTACCACGCCGATAACTACAGCCCTGAGGACAACAGGTT < 41bp 1 0.197770189371139 1 0.476281434297562 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71209490 chr11:71209484 nonsynonymous SNV 0.336 2 15 hm5C_associated_SNPs_46188 0 0 1 0 2 NADSYN1 chr11:71209398 3'AG 71209398 Downstream 87bp
chr11 71209484 71209484 1 + G T UCEC 71209490 + 71209470 71209510 41 GCGTACCACGCCGAGAACTACAGCCCTGAGGACAACAGGTT GCGTACCACGCCGATAACTACAGCCCTGAGGACAACAGGTT < 41bp 1 0.197770189371139 1 0.476281434297562 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71209490 chr11:71209484 nonsynonymous SNV 0.336 2 15 hm5C_associated_SNPs_46188 0 0 1 0 2 NADSYN1 chr11:71209574 5'GT 71209574 Upstream 91bp
chr19 10394229 10394229 1 + G A UCEC 10394220 + 10394200 10394240 41 GCCAGTGGGCAAGAACCTTACCCTACGCTGCCAGGTGGAGG GCCAGTGGGCAAGAACCTTACCCTACGCTACCAGGTGGAGG < 41bp 1 0.384731562523761 1 0.0598515272140503 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ICAM1 ENSG00000090339 CDS Human protein_coding chr19:10394220 chr19:10394229 nonsynonymous SNV 0.765 4 30 hm5C_associated_SNPs_46190 0 0 1 0 1 ICAM1 chr19:10394157 3'AG 10394157 Downstream 73bp
chr17 34147398 34147398 1 + T C UCEC 34147392 + 34147372 34147412 41 AGCAGAGCTCATATAGCCAGCAACCATATAATAACCAGGGA AGCAGAGCTCATATAGCCAGCAACCACATAATAACCAGGGA < 41bp 1 0.150339591235523 1 0.412758648395538 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF15 ENSG00000172660 CDS Human other chr17:34147392 chr17:34147398 nonsynonymous SNV 0.984 3 27 hm5C_associated_SNPs_46191 0 0 1 0 2 TAF15 chr17:34147336 3'AG 34147336 Downstream 63bp
chr17 34147398 34147398 1 + T C UCEC 34147392 + 34147372 34147412 41 AGCAGAGCTCATATAGCCAGCAACCATATAATAACCAGGGA AGCAGAGCTCATATAGCCAGCAACCACATAATAACCAGGGA < 41bp 1 0.150339591235523 1 0.412758648395538 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF15 ENSG00000172660 CDS Human other chr17:34147392 chr17:34147398 nonsynonymous SNV 0.984 3 27 hm5C_associated_SNPs_46191 0 0 1 0 2 TAF15 chr17:34147441 5'GT 34147441 Upstream 44bp
chr21 47805871 47805871 1 + C T UCEC 47805872 + 47805852 47805892 41 CTCCTCTCCATGCTCAAGGCCGACGTCAACCTGTCCCACAG CTCCTCTCCATGCTCAAGGTCGACGTCAACCTGTCCCACAG < 41bp 1 0.359934411541022 1 0.245558530092239 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47805872 chr21:47805871 nonsynonymous SNV 0.006 2 20 hm5C_associated_SNPs_46192 0 0 0 0 1 PCNT chr21:47805898 5'GT 47805898 Upstream 28bp
chr19 12036061 12036061 1 + C T UCEC 12036063 + 12036043 12036083 41 CAGGAGCTGTAGAGAGGACCCCGGTACATCTGAAAGCCGGG CAGGAGCTGTAGAGAGGATCCCGGTACATCTGAAAGCCGGG < 41bp 1 0.553731649663116 1 0.377058327198029 experiment 0.892536700673768 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF700 ENSG00000196757;ENSG00000197054;ENSG00000267179 CDS Human other chr19:12036063 chr19:12036061 synonymous SNV . 0 19 hm5C_associated_SNPs_46194 0 0 1 0 1 ZNF700 chr19:12036088 5'GT 12036088 Upstream 28bp
chr1 110211592 110211592 1 + T C UCEC 110211597 + 110211577 110211617 41 ATGAAAAATTCAAGCTGGGCCTGGACTTTCCCAATGTAGGT ATGAAAAATTCAAGCCGGGCCTGGACTTTCCCAATGTAGGT < 41bp 1 0.757905297316962 1 0.206484287977219 experiment 0.484189405366077 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GSTM2 ENSG00000213366 CDS Human protein_coding chr1:110211597 chr1:110211592 nonsynonymous SNV 0.986 3 16 hm5C_associated_SNPs_46195 0 0 0 0 2 GSTM2 chr1:110211547 3'AG 110211547 Downstream 46bp
chr1 110211592 110211592 1 + T C UCEC 110211597 + 110211577 110211617 41 ATGAAAAATTCAAGCTGGGCCTGGACTTTCCCAATGTAGGT ATGAAAAATTCAAGCCGGGCCTGGACTTTCCCAATGTAGGT < 41bp 1 0.757905297316962 1 0.206484287977219 experiment 0.484189405366077 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GSTM2 ENSG00000213366 CDS Human protein_coding chr1:110211597 chr1:110211592 nonsynonymous SNV 0.986 3 16 hm5C_associated_SNPs_46195 0 0 0 0 2 GSTM2 chr1:110211611 5'GT 110211611 Upstream 20bp
chr1 64095701 64095701 1 + C T UCEC 64095685 + 64095665 64095705 41 TGAAGAATATGCAGTTTGCCCTGACCTGAAAGTAGACCTTG TGAAGAATATGCAGTTTGCCCTGACCTGAAAGTAGATCTTG < 41bp 1 0.226575005622665 1 0.0332112312316895 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PGM1 ENSG00000079739 CDS Human protein_coding chr1:64095685 chr1:64095701 synonymous SNV . 0 37 hm5C_associated_SNPs_46197 0 0 1 0 1 PGM1 chr1:64095613 3'AG 64095613 Downstream 89bp
chr6 155154510 155154510 1 + C T UCEC 155154525 + 155154505 155154545 41 AAGCACAGAAACTGAGGGGACATAATCATCACTCAGTAGGT AAGCATAGAAACTGAGGGGACATAATCATCACTCAGTAGGT < 41bp 1 0.193069292609416 1 0.162731647491455 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SCAF8 ENSG00000213079 CDS Human other chr6:155154525 chr6:155154510 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_46198 0 0 1 0 1 SCAF8 chr6:155154543 5'GT 155154543 Upstream 34bp
chr10 71712682 71712682 1 + G A UCEC 71712688 + 71712668 71712708 41 CCTAAAGGGGATAAGGGAGACCAAGGAGCGCCTGGATTAGA CCTAAAGGGGATAAAGGAGACCAAGGAGCGCCTGGATTAGA < 41bp 1 0.192898065035018 1 0.206167548894882 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71712688 chr10:71712682 synonymous SNV . 0 15 hm5C_associated_SNPs_46199 0 0 0 0 2 COL13A1 chr10:71712638 3'AG 71712638 Downstream 45bp
chr10 71712682 71712682 1 + G A UCEC 71712688 + 71712668 71712708 41 CCTAAAGGGGATAAGGGAGACCAAGGAGCGCCTGGATTAGA CCTAAAGGGGATAAAGGAGACCAAGGAGCGCCTGGATTAGA < 41bp 1 0.192898065035018 1 0.206167548894882 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71712688 chr10:71712682 synonymous SNV . 0 15 hm5C_associated_SNPs_46199 0 0 0 0 2 COL13A1 chr10:71712724 5'GT 71712724 Upstream 43bp
chrX 114856647 114856647 1 + G T UCEC 114856664 + 114856644 114856684 41 AGAGAAATTATTCAGAAACTCATGCTGGATGGTGACAGGAA AGATAAATTATTCAGAAACTCATGCTGGATGGTGACAGGAA < 41bp 1 0.262197131177343 1 0.256947785615921 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PLS3 ENSG00000102024 CDS Human protein_coding chrX:114856664 chrX:114856647 stopgain 1.000 1 4 hm5C_associated_SNPs_46200 0 0 1 0 2 PLS3 chrX:114856558 3'AG 114856558 Downstream 90bp
chrX 114856647 114856647 1 + G T UCEC 114856664 + 114856644 114856684 41 AGAGAAATTATTCAGAAACTCATGCTGGATGGTGACAGGAA AGATAAATTATTCAGAAACTCATGCTGGATGGTGACAGGAA < 41bp 1 0.262197131177343 1 0.256947785615921 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PLS3 ENSG00000102024 CDS Human protein_coding chrX:114856664 chrX:114856647 stopgain 1.000 1 4 hm5C_associated_SNPs_46200 0 0 1 0 2 PLS3 chrX:114856721 5'GT 114856721 Upstream 75bp
chr21 42629179 42629179 1 + C T UCEC 42629163 + 42629143 42629183 41 TTTCCCCATCCACAAATGCGCTGGTGATCGGTGCCACGGTG TTTCCCCATCCACAAATGCGCTGGTGATCGGTGCCATGGTG < 41bp 1 0.501480973166727 1 0.113743931055069 experiment 0.997038053666545 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BACE2 ENSG00000182240 CDS Human protein_coding chr21:42629163 chr21:42629179 nonsynonymous SNV 0.598 4 37 hm5C_associated_SNPs_46201 0 0 1 0 2 BACE2 chr21:42629085 3'AG 42629085 Downstream 95bp
chr21 42629179 42629179 1 + C T UCEC 42629163 + 42629143 42629183 41 TTTCCCCATCCACAAATGCGCTGGTGATCGGTGCCACGGTG TTTCCCCATCCACAAATGCGCTGGTGATCGGTGCCATGGTG < 41bp 1 0.501480973166727 1 0.113743931055069 experiment 0.997038053666545 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BACE2 ENSG00000182240 CDS Human protein_coding chr21:42629163 chr21:42629179 nonsynonymous SNV 0.598 4 37 hm5C_associated_SNPs_46201 0 0 1 0 2 BACE2 chr21:42629253 5'GT 42629253 Upstream 75bp
chr6 7572159 7572159 1 + A C UCEC 7572161 + 7572141 7572181 41 CCAACAGAGAAAATGACAAGCAAGAAACATGGATGCTGATG CCAACAGAGAAAATGACACGCAAGAAACATGGATGCTGATG < 41bp 1 0.476790828449399 1 0.734280943870544 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572161 chr6:7572159 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_46202 0 0 1 0 1 DSP chr6:7572075 3'AG 7572075 Downstream 85bp
chr6 7572159 7572159 1 + A C UCEC 7572176 + 7572156 7572196 41 ACAAGCAAGAAACATGGATGCTGATGGAGCTGCAGAAGATT ACACGCAAGAAACATGGATGCTGATGGAGCTGCAGAAGATT < 41bp 1 0.204000319701565 1 0.0756571888923645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572176 chr6:7572159 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_46203 0 0 1 0 1 DSP chr6:7572075 3'AG 7572075 Downstream 85bp
chr19 10370383 10370383 1 + A G UCEC 10370393 + 10370373 10370413 41 CTCTGGCAGGACTCACGTTACAGACCCCTCTACCCCTTCAG CTCTGGCAGGGCTCACGTTACAGACCCCTCTACCCCTTCAG < 41bp 1 0.533851933953516 1 0.426299393177032 experiment 0.932296132092969 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10370393 chr19:10370383 nonsynonymous SNV 0.807 1 11 hm5C_associated_SNPs_46204 0 0 1 0 1 MRPL4 chr19:10370293 3'AG 10370293 Downstream 91bp
chr2 96686970 96686970 1 + C A UCEC 96686979 + 96686959 96686999 41 GACCTGATAGCCTGGGTGTCCCAGTGAGTGACAGGGGCTAT GACCTGATAGCATGGGTGTCCCAGTGAGTGACAGGGGCTAT < 41bp 1 0.339604799546162 1 0.285600602626801 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAHD2CP ENSG00000231584 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:96686979 chr2:96686970 . . 0 12 hm5C_associated_SNPs_46205 0 0 1 1 2 FAHD2CP chr2:96686873 3'AG 96686873 Downstream 98bp
chr2 96686970 96686970 1 + C A UCEC 96686979 + 96686959 96686999 41 GACCTGATAGCCTGGGTGTCCCAGTGAGTGACAGGGGCTAT GACCTGATAGCATGGGTGTCCCAGTGAGTGACAGGGGCTAT < 41bp 1 0.339604799546162 1 0.285600602626801 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAHD2CP ENSG00000231584 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:96686979 chr2:96686970 . . 0 12 hm5C_associated_SNPs_46205 0 0 1 1 2 FAHD2CP chr2:96686981 5'GT 96686981 Upstream 12bp
chrX 47030523 47030523 1 + G A UCEC 47030525 + 47030505 47030545 41 CCAGGCTTCCCCCGAGACGGCGACTATCGGGACCAGGACTA CCAGGCTTCCCCCGAGACAGCGACTATCGGGACCAGGACTA < 41bp 1 0.598361488119659 1 0.167837381362915 experiment 0.803277023760683 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030525 chrX:47030523 nonsynonymous SNV 1.000 3 19 hm5C_associated_SNPs_46206 0 0 1 0 2 RBM10 chrX:47030427 3'AG 47030427 Downstream 97bp
chrX 47030523 47030523 1 + G A UCEC 47030525 + 47030505 47030545 41 CCAGGCTTCCCCCGAGACGGCGACTATCGGGACCAGGACTA CCAGGCTTCCCCCGAGACAGCGACTATCGGGACCAGGACTA < 41bp 1 0.598361488119659 1 0.167837381362915 experiment 0.803277023760683 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030525 chrX:47030523 nonsynonymous SNV 1.000 3 19 hm5C_associated_SNPs_46206 0 0 1 0 2 RBM10 chrX:47030509 3'AG 47030509 Downstream 15bp
chr19 46878973 46878973 1 + G A UCEC 46878977 + 46878957 46878997 41 GGCGACGAGCACAAGCGCTCCGTGGTGGACTCGCTGGACAT GGCGACGAGCACAAGCACTCCGTGGTGGACTCGCTGGACAT < 41bp 1 0.579577721488026 1 0.799529910087585 experiment 0.840844557023948 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46878977 chr19:46878973 nonsynonymous SNV 0.506 1 17 hm5C_associated_SNPs_46207 0 0 1 0 1 PPP5C chr19:46879008 5'GT 46879008 Upstream 36bp
chr2 235943686 235943686 1 + C A UCEC 235943692 + 235943672 235943712 41 CCAACTCCAATGGCCTCCCTCGCTGCAAGTCAGAGGGGACC CCAACTCCAATGGCATCCCTCGCTGCAAGTCAGAGGGGACC < 41bp 1 0.225082386578645 1 0.12140753865242 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235943692 chr2:235943686 nonsynonymous SNV 0.810 4 15 hm5C_associated_SNPs_46208 0 0 1 0 2 SH3BP4 chr2:235943599 3'AG 235943599 Downstream 88bp
chr2 235943686 235943686 1 + C A UCEC 235943692 + 235943672 235943712 41 CCAACTCCAATGGCCTCCCTCGCTGCAAGTCAGAGGGGACC CCAACTCCAATGGCATCCCTCGCTGCAAGTCAGAGGGGACC < 41bp 1 0.225082386578645 1 0.12140753865242 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235943692 chr2:235943686 nonsynonymous SNV 0.810 4 15 hm5C_associated_SNPs_46208 0 0 1 0 2 SH3BP4 chr2:235943764 5'GT 235943764 Upstream 79bp
chr21 30422470 30422470 1 + T G UCEC 30422456 + 30422436 30422476 41 TAACAAACACATAAAGTTTCCGGAAATCTTAGATTTGGCTC TAACAAACACATAAAGTTTCCGGAAATCTTAGATGTGGCTC < 41bp 1 0.771147396732648 1 0.782739818096161 experiment 0.457705206534705 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP16 ENSG00000156256 CDS Human protein_coding chr21:30422456 chr21:30422470 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_46209 0 0 1 0 2 USP16 chr21:30422413 3'AG 30422413 Downstream 58bp
chr21 30422470 30422470 1 + T G UCEC 30422456 + 30422436 30422476 41 TAACAAACACATAAAGTTTCCGGAAATCTTAGATTTGGCTC TAACAAACACATAAAGTTTCCGGAAATCTTAGATGTGGCTC < 41bp 1 0.771147396732648 1 0.782739818096161 experiment 0.457705206534705 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP16 ENSG00000156256 CDS Human protein_coding chr21:30422456 chr21:30422470 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_46209 0 0 1 0 2 USP16 chr21:30422499 5'GT 30422499 Upstream 30bp
chr14 100563946 100563946 1 + C A UCEC 100563942 + 100563922 100563962 41 AAGTAAAGAAGAGGCAACCACGTTCTCCAATGCAATGCTGT AAGTAAAGAAGAGGCAACCACGTTATCCAATGCAATGCTGT < 41bp 1 0.142283155965601 1 0.145008951425552 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EVL ENSG00000196405 CDS Human protein_coding chr14:100563942 chr14:100563946 nonsynonymous SNV 0.977 5 25 hm5C_associated_SNPs_46210 0 0 0 0 1 EVL chr14:100563995 5'GT 100563995 Upstream 50bp
chr8 100182349 100182349 1 + G A UCEC 100182330 + 100182310 100182350 41 GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAGC GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAAC < 41bp 1 0.0872746616907182 1 0.117825835943222 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100182330 chr8:100182349 nonsynonymous SNV 0.999 3 40 hm5C_associated_SNPs_46211 0 0 1 0 2 VPS13B chr8:100182267 3'AG 100182267 Downstream 83bp
chr8 100182349 100182349 1 + G A UCEC 100182330 + 100182310 100182350 41 GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAGC GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAAC < 41bp 1 0.0872746616907182 1 0.117825835943222 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100182330 chr8:100182349 nonsynonymous SNV 0.999 3 40 hm5C_associated_SNPs_46211 0 0 1 0 2 VPS13B chr8:100182391 5'GT 100182391 Upstream 43bp
chr2 200824514 200824514 1 + C A UCEC 200824505 + 200824485 200824525 41 TGCATTGAAAGAAAAGGTTACTTCACTACCTGACAACCATA TGCATTGAAAGAAAAGGTTACTTCACTACATGACAACCATA < 41bp 1 0.244363223742361 1 0.0672642588615417 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200824505 chr2:200824514 nonsynonymous SNV 0.993 2 30 hm5C_associated_SNPs_46212 0 0 1 0 2 MAIP1 chr2:200824477 3'AG 200824477 Downstream 38bp
chr2 200824514 200824514 1 + C A UCEC 200824505 + 200824485 200824525 41 TGCATTGAAAGAAAAGGTTACTTCACTACCTGACAACCATA TGCATTGAAAGAAAAGGTTACTTCACTACATGACAACCATA < 41bp 1 0.244363223742361 1 0.0672642588615417 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200824505 chr2:200824514 nonsynonymous SNV 0.993 2 30 hm5C_associated_SNPs_46212 0 0 1 0 2 MAIP1 chr2:200824603 5'GT 200824603 Upstream 90bp
chr9 100773633 100773633 1 + G A UCEC 100773650 + 100773630 100773670 41 GATGTAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGA GATATAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGA < 41bp 1 0.695990219015885 1 0.475627332925797 experiment 0.608019561968231 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773650 chr9:100773633 nonsynonymous SNV 0.999 1 4 hm5C_associated_SNPs_46213 0 0 1 0 2 ANP32B chr9:100773553 3'AG 100773553 Downstream 81bp
chr9 100773633 100773633 1 + G A UCEC 100773650 + 100773630 100773670 41 GATGTAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGA GATATAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGA < 41bp 1 0.695990219015885 1 0.475627332925797 experiment 0.608019561968231 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773650 chr9:100773633 nonsynonymous SNV 0.999 1 4 hm5C_associated_SNPs_46213 0 0 1 0 2 ANP32B chr9:100773671 5'GT 100773671 Upstream 39bp
chr9 100773633 100773633 1 + G A UCEC 100773653 + 100773633 100773673 41 GTAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGAGGT ATAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGAGGT < 41bp 1 0.430300607443284 1 0.379448115825653 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773653 chr9:100773633 nonsynonymous SNV 0.999 1 1 hm5C_associated_SNPs_46214 0 0 1 0 2 ANP32B chr9:100773553 3'AG 100773553 Downstream 81bp
chr9 100773633 100773633 1 + G A UCEC 100773653 + 100773633 100773673 41 GTAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGAGGT ATAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGAGGT < 41bp 1 0.430300607443284 1 0.379448115825653 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773653 chr9:100773633 nonsynonymous SNV 0.999 1 1 hm5C_associated_SNPs_46214 0 0 1 0 2 ANP32B chr9:100773671 5'GT 100773671 Upstream 39bp
chr7 157000246 157000246 1 + G T UCEC 157000240 + 157000220 157000260 41 ATAACGAATTCTTCGGTGATCCCATAGAAGGTAAGGATTTT ATAACGAATTCTTCGGTGATCCCATATAAGGTAAGGATTTT < 41bp 1 0.0515850423829563 1 0.0774242579936981 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE3C ENSG00000009335 CDS Human protein_coding chr7:157000240 chr7:157000246 stopgain 1.000 1 27 hm5C_associated_SNPs_46215 0 0 1 0 1 UBE3C chr7:157000249 5'GT 157000249 Upstream 4bp
chr2 45879525 45879525 1 + G A UCEC 45879512 + 45879492 45879532 41 CACGATGCCCCCATAGGCTACGACGACTTCGTGGCCAACTG CACGATGCCCCCATAGGCTACGACGACTTCGTGACCAACTG < 41bp 1 0.268508666514157 1 0.169610321521759 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKCE ENSG00000171132 CDS Human protein_coding chr2:45879512 chr2:45879525 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_46216 0 0 1 0 1 PRKCE chr2:45879587 5'GT 45879587 Upstream 63bp
chr2 118582618 118582618 1 + T C UCEC 118582619 + 118582599 118582639 41 CTTCTTTTCATCTTGTATGTCTGTGAAATACCACTATGAGT CTTCTTTTCATCTTGTATGCCTGTGAAATACCACTATGAGT < 41bp 1 0.326184556002065 1 0.208222210407257 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118582619 chr2:118582618 nonsynonymous SNV 0.832 4 20 hm5C_associated_SNPs_46218 0 0 1 0 1 DDX18 chr2:118582677 5'GT 118582677 Upstream 60bp
chr3 52245358 52245358 1 + G A UCEC 52245356 + 52245336 52245376 41 CACGAGTTCTCTGATTGACACCGTACGGTCCTATGCTGCTG CACGAGTTCTCTGATTGACACCATACGGTCCTATGCTGCTG < 41bp 1 0.292713958049217 1 0.144481778144836 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245356 chr3:52245358 nonsynonymous SNV 0.031 1 23 hm5C_associated_SNPs_46219 0 0 1 0 1 ALAS1 chr3:52245299 3'AG 52245299 Downstream 60bp
chr3 52245358 52245358 1 + G A UCEC 52245357 + 52245337 52245377 41 ACGAGTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGG ACGAGTTCTCTGATTGACACCATACGGTCCTATGCTGCTGG < 41bp 1 0.129355172011371 1 0.286707162857056 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245357 chr3:52245358 nonsynonymous SNV 0.031 1 22 hm5C_associated_SNPs_46220 0 0 1 0 1 ALAS1 chr3:52245299 3'AG 52245299 Downstream 60bp
chr3 52245358 52245358 1 + G A UCEC 52245361 + 52245341 52245381 41 GTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGGCTTC GTTCTCTGATTGACACCATACGGTCCTATGCTGCTGGCTTC < 41bp 1 0.413683213244099 1 0.520476758480072 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245361 chr3:52245358 nonsynonymous SNV 0.031 1 18 hm5C_associated_SNPs_46221 0 0 1 0 1 ALAS1 chr3:52245299 3'AG 52245299 Downstream 60bp
chr12 112915760 112915760 1 + G A UCEC 112915765 + 112915745 112915785 41 GACTTTTGGCGGATGGTGTTCCAAGAAAACTCCCGAGTGAT GACTTTTGGCGGATGATGTTCCAAGAAAACTCCCGAGTGAT < 41bp 1 0.268103190182488 1 0.360567986965179 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915765 chr12:112915760 nonsynonymous SNV 0.995 2 16 hm5C_associated_SNPs_46222 0 0 1 0 2 PTPN11 chr12:112915661 3'AG 112915661 Downstream 100bp
chr12 112915760 112915760 1 + G A UCEC 112915765 + 112915745 112915785 41 GACTTTTGGCGGATGGTGTTCCAAGAAAACTCCCGAGTGAT GACTTTTGGCGGATGATGTTCCAAGAAAACTCCCGAGTGAT < 41bp 1 0.268103190182488 1 0.360567986965179 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915765 chr12:112915760 nonsynonymous SNV 0.995 2 16 hm5C_associated_SNPs_46222 0 0 1 0 2 PTPN11 chr12:112915819 5'GT 112915819 Upstream 60bp
chr12 112915760 112915760 1 + G A UCEC 112915766 + 112915746 112915786 41 ACTTTTGGCGGATGGTGTTCCAAGAAAACTCCCGAGTGATT ACTTTTGGCGGATGATGTTCCAAGAAAACTCCCGAGTGATT < 41bp 1 0.7939052058123 1 0.367148876190186 experiment 0.412189588375399 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915766 chr12:112915760 nonsynonymous SNV 0.995 2 15 hm5C_associated_SNPs_46223 0 0 1 0 2 PTPN11 chr12:112915661 3'AG 112915661 Downstream 100bp
chr12 112915760 112915760 1 + G A UCEC 112915766 + 112915746 112915786 41 ACTTTTGGCGGATGGTGTTCCAAGAAAACTCCCGAGTGATT ACTTTTGGCGGATGATGTTCCAAGAAAACTCCCGAGTGATT < 41bp 1 0.7939052058123 1 0.367148876190186 experiment 0.412189588375399 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915766 chr12:112915760 nonsynonymous SNV 0.995 2 15 hm5C_associated_SNPs_46223 0 0 1 0 2 PTPN11 chr12:112915819 5'GT 112915819 Upstream 60bp
chr14 24634127 24634127 1 + G A UCEC 24634110 + 24634090 24634130 41 CACCTGGGCCAGGCCCGCATCTGCTGCCCAGCAACGAGTGC CACCTGGGCCAGGCCCGCATCTGCTGCCCAGCAACGAATGC < 41bp 1 0.572366455127957 1 0.400598108768463 experiment 0.855267089744085 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRF9 ENSG00000213928 CDS Human protein_coding chr14:24634110 chr14:24634127 synonymous SNV . 0 38 hm5C_associated_SNPs_46224 0 0 0 0 1 IRF9 chr14:24634164 5'GT 24634164 Upstream 38bp
chr22 30413916 30413916 1 + G A UCEC 30413919 + 30413899 30413939 41 TCCTCCCCCCTCCTCAGGTGCTGTACCCTGTGTGCCATGTG TCCTCCCCCCTCCTCAGATGCTGTACCCTGTGTGCCATGTG < 41bp 1 0.218401667092346 1 0.132720112800598 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTMR3 ENSG00000100330 CDS Human protein_coding chr22:30413919 chr22:30413916 nonsynonymous SNV 1.000 5 18 hm5C_associated_SNPs_46225 0 0 1 0 1 MTMR3 chr22:30413916 3'AG 30413916 Downstream 1bp
chr1 82372844 82372844 1 + T C UCEC 82372824 + 82372804 82372844 41 TTGAGAGCGCTAACTATGGTCGGACGGATGACAAGATTTGT TTGAGAGCGCTAACTATGGTCGGACGGATGACAAGATTTGC < 41bp 1 0.297536557448165 1 0.383719503879547 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRL2 ENSG00000117114 CDS Human protein_coding chr1:82372824 chr1:82372844 synonymous SNV . 0 41 hm5C_associated_SNPs_46226 0 0 1 0 1 ADGRL2 chr1:82372915 5'GT 82372915 Upstream 72bp
chrX 69370142 69370142 1 + C T UCEC 69370124 + 69370104 69370144 41 GTGACTGGTATGAGCAACATCGGAAATATGGAGCATTACCG GTGACTGGTATGAGCAACATCGGAAATATGGAGCATTATCG < 41bp 1 0.771516267520002 1 0.445402860641479 experiment 0.456967464959996 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69370124 chrX:69370142 nonsynonymous SNV 0.989 1 39 hm5C_associated_SNPs_46227 0 0 1 0 1 IGBP1 chrX:69370172 5'GT 69370172 Upstream 31bp
chr8 1876667 1876667 1 + G T UCEC 1876673 + 1876653 1876693 41 CCCAAAGTCATTGAGTGCTTCAACGTGGAATCTCGCATCCT CCCAAAGTCATTGATTGCTTCAACGTGGAATCTCGCATCCT < 41bp 1 0.404632722724622 1 0.415042757987976 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1876673 chr8:1876667 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_46229 0 0 0 0 1 ARHGEF10 chr8:1876593 3'AG 1876593 Downstream 75bp
chr17 73567082 73567082 1 + C A UCEC 73567066 + 73567046 73567086 41 GCCAAGGCTGAGCGGCCAGGCCTCCAGAACATGGAGCTGGC GCCAAGGCTGAGCGGCCAGGCCTCCAGAACATGGAGATGGC < 41bp 1 0.0728287118903408 1 0.36929851770401 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73567066 chr17:73567082 nonsynonymous SNV 0.998 3 37 hm5C_associated_SNPs_46230 0 0 1 0 2 LLGL2 chr17:73567031 3'AG 73567031 Downstream 52bp
chr17 73567082 73567082 1 + C A UCEC 73567066 + 73567046 73567086 41 GCCAAGGCTGAGCGGCCAGGCCTCCAGAACATGGAGCTGGC GCCAAGGCTGAGCGGCCAGGCCTCCAGAACATGGAGATGGC < 41bp 1 0.0728287118903408 1 0.36929851770401 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73567066 chr17:73567082 nonsynonymous SNV 0.998 3 37 hm5C_associated_SNPs_46230 0 0 1 0 2 LLGL2 chr17:73567181 5'GT 73567181 Upstream 100bp
chr22 38028092 38028092 1 + G A UCEC 38028074 + 38028054 38028094 41 TCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTG TCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACATG < 41bp 1 0.388600627837407 1 0.0536634922027588 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38028074 chr22:38028092 nonsynonymous SNV 0.985 4 39 hm5C_associated_SNPs_46231 0 0 1 0 2 GGA1 chr22:38028003 3'AG 38028003 Downstream 90bp
chr22 38028092 38028092 1 + G A UCEC 38028074 + 38028054 38028094 41 TCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTG TCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACATG < 41bp 1 0.388600627837407 1 0.0536634922027588 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38028074 chr22:38028092 nonsynonymous SNV 0.985 4 39 hm5C_associated_SNPs_46231 0 0 1 0 2 GGA1 chr22:38028172 5'GT 38028172 Upstream 81bp
chr19 13004418 13004418 1 + C A UCEC 13004401 + 13004381 13004421 41 CGATGAGTGTCCAGTCCTCCCTCGTCATGCACCCTATCTAT CGATGAGTGTCCAGTCCTCCCTCGTCATGCACCCTATATAT < 41bp 1 0.698646828169272 1 0.0597171485424042 experiment 0.602706343661456 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13004401 chr19:13004418 nonsynonymous SNV . 0 38 hm5C_associated_SNPs_46232 0 0 1 0 1 GCDH chr19:13004467 5'GT 13004467 Upstream 50bp
chr16 19548850 19548850 1 + G T UCEC 19548865 + 19548845 19548885 41 AAAAAGATACCCTAAGGGATCTGGCTTCGTTAACAAGAATA AAAAATATACCCTAAGGGATCTGGCTTCGTTAACAAGAATA < 41bp 1 0.383645188605308 1 0.173627018928528 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCP110 ENSG00000103540 CDS Human protein_coding chr16:19548865 chr16:19548850 nonsynonymous SNV 0.994 2 6 hm5C_associated_SNPs_46233 0 0 1 0 1 CCP110 chr16:19548909 5'GT 19548909 Upstream 60bp
chr11 67018221 67018221 1 + G A UCEC 67018208 + 67018188 67018228 41 AGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAGAGAA AGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCACAGAGAA < 41bp 1 0.449314879956816 1 0.605103254318237 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KDM2A ENSG00000173120 CDS Human protein_coding chr11:67018208 chr11:67018221 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_46235 0 0 1 0 1 KDM2A chr11:67018269 5'GT 67018269 Upstream 49bp
chr2 74077587 74077587 1 + G T UCEC 74077580 + 74077560 74077600 41 GATTACTGCAACACAGAGAACGAAGAAGAACTTTTCCTCAT GATTACTGCAACACAGAGAACGAAGAATAACTTTTCCTCAT < 41bp 1 0.605341357579748 1 0.506510555744171 experiment 0.789317284840503 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STAMBP ENSG00000124356 CDS Human protein_coding chr2:74077580 chr2:74077587 stopgain 1.000 1 28 hm5C_associated_SNPs_46236 0 0 1 0 2 STAMBP chr2:74077503 3'AG 74077503 Downstream 85bp
chr2 74077587 74077587 1 + G T UCEC 74077580 + 74077560 74077600 41 GATTACTGCAACACAGAGAACGAAGAAGAACTTTTCCTCAT GATTACTGCAACACAGAGAACGAAGAATAACTTTTCCTCAT < 41bp 1 0.605341357579748 1 0.506510555744171 experiment 0.789317284840503 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STAMBP ENSG00000124356 CDS Human protein_coding chr2:74077580 chr2:74077587 stopgain 1.000 1 28 hm5C_associated_SNPs_46236 0 0 1 0 2 STAMBP chr2:74077640 5'GT 74077640 Upstream 54bp
chr4 57876582 57876582 1 + C A UCEC 57876563 + 57876543 57876583 41 CTTTTGCGTCTACTCTTTCTCACCTGCGTCGTTTAAATTCT CTTTTGCGTCTACTCTTTCTCACCTGCGTCGTTTAAATTAT < 41bp 1 0.633013362841597 1 0.414021641016006 experiment 0.733973274316805 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57876563 chr4:57876582 nonsynonymous SNV 0.998 4 40 hm5C_associated_SNPs_46237 0 0 1 0 2 POLR2B chr4:57876527 3'AG 57876527 Downstream 56bp
chr4 57876582 57876582 1 + C A UCEC 57876563 + 57876543 57876583 41 CTTTTGCGTCTACTCTTTCTCACCTGCGTCGTTTAAATTCT CTTTTGCGTCTACTCTTTCTCACCTGCGTCGTTTAAATTAT < 41bp 1 0.633013362841597 1 0.414021641016006 experiment 0.733973274316805 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57876563 chr4:57876582 nonsynonymous SNV 0.998 4 40 hm5C_associated_SNPs_46237 0 0 1 0 2 POLR2B chr4:57876670 5'GT 57876670 Upstream 89bp
chr18 46284678 46284678 1 + C T UCEC 46284660 + 46284640 46284680 41 CCCCACAGCAGTCAGGGGGGCCAGAGGTTGAGACAAAACGT CCCCACAGCAGTCAGGGGGGCCAGAGGTTGAGACAAAATGT < 41bp 1 0.237743953799476 1 0.448469161987305 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284660 chr18:46284678 nonsynonymous SNV 0.625 1 39 hm5C_associated_SNPs_46239 0 0 0 0 1 CTIF chr18:46284776 5'GT 46284776 Upstream 99bp
chr18 46284678 46284678 1 + C T UCEC 46284661 + 46284641 46284681 41 CCCACAGCAGTCAGGGGGGCCAGAGGTTGAGACAAAACGTA CCCACAGCAGTCAGGGGGGCCAGAGGTTGAGACAAAATGTA < 41bp 1 0.290466010977664 1 0.662755131721497 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284661 chr18:46284678 nonsynonymous SNV 0.625 1 38 hm5C_associated_SNPs_46240 0 0 0 0 1 CTIF chr18:46284776 5'GT 46284776 Upstream 99bp
chr18 46284678 46284678 1 + C T UCEC 46284696 + 46284676 46284716 41 AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGCGG AATGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGCGG < 41bp 1 0.513132197628962 1 0.127571642398834 experiment 0.973735604742077 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284696 chr18:46284678 nonsynonymous SNV 0.625 1 3 hm5C_associated_SNPs_46241 0 0 0 0 1 CTIF chr18:46284776 5'GT 46284776 Upstream 99bp
chr7 92987679 92987679 1 + C T UCEC 92987685 + 92987665 92987705 41 GTTTGCCTGGGATCCCATATCAATAAGAAAGCAAGACAAAA GTTTGCCTGGGATCTCATATCAATAAGAAAGCAAGACAAAA < 41bp 1 0.530144466139446 1 0.341527998447418 experiment 0.939711067721109 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS50 ENSG00000004766 CDS Human protein_coding chr7:92987685 chr7:92987679 synonymous SNV . 0 15 hm5C_associated_SNPs_46242 0 0 1 0 1 VPS50 chr7:92987629 3'AG 92987629 Downstream 51bp
chr10 104160789 104160789 1 + G A UCEC 104160790 + 104160770 104160810 41 GGGTACCCGACCCTCACCCGCCTCCTTCTGAAGGCTGGTCA GGGTACCCGACCCTCACCCACCTCCTTCTGAAGGCTGGTCA < 41bp 1 0.0602803885456944 1 0.151183575391769 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160790 chr10:104160789 nonsynonymous SNV 0.969 0 20 hm5C_associated_SNPs_46244 0 0 0 0 2 NFKB2 chr10:104160704 3'AG 104160704 Downstream 86bp
chr10 104160789 104160789 1 + G A UCEC 104160790 + 104160770 104160810 41 GGGTACCCGACCCTCACCCGCCTCCTTCTGAAGGCTGGTCA GGGTACCCGACCCTCACCCACCTCCTTCTGAAGGCTGGTCA < 41bp 1 0.0602803885456944 1 0.151183575391769 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160790 chr10:104160789 nonsynonymous SNV 0.969 0 20 hm5C_associated_SNPs_46244 0 0 0 0 2 NFKB2 chr10:104160806 5'GT 104160806 Upstream 18bp
chr7 56136278 56136278 1 + G T UCEC 56136260 + 56136240 56136280 41 CCAGACAGCAGAGATGGTGACGGGCCTGTGCGGGAGGCGAC CCAGACAGCAGAGATGGTGACGGGCCTGTGCGGGAGGCTAC < 41bp 1 0.618410999477053 1 0.719937384128571 experiment 0.763178001045893 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUMF2 ENSG00000129103 CDS Human protein_coding chr7:56136260 chr7:56136278 synonymous SNV . 0 39 hm5C_associated_SNPs_46249 0 0 1 0 1 SUMF2 chr7:56136331 5'GT 56136331 Upstream 54bp
chr10 126205766 126205766 1 + C T UCEC 126205754 + 126205734 126205774 41 TCACTGCCGTGACAGGCCGTCATGATTGGGGACGATATCGT TCACTGCCGTGACAGGCCGTCATGATTGGGGATGATATCGT < 41bp 1 0.523943489150507 1 0.291867911815643 experiment 0.952113021698985 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LHPP ENSG00000107902 CDS Human protein_coding chr10:126205754 chr10:126205766 synonymous SNV . 0 33 hm5C_associated_SNPs_46250 0 0 0 0 2 LHPP chr10:126205749 3'AG 126205749 Downstream 18bp
chr10 126205766 126205766 1 + C T UCEC 126205754 + 126205734 126205774 41 TCACTGCCGTGACAGGCCGTCATGATTGGGGACGATATCGT TCACTGCCGTGACAGGCCGTCATGATTGGGGATGATATCGT < 41bp 1 0.523943489150507 1 0.291867911815643 experiment 0.952113021698985 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LHPP ENSG00000107902 CDS Human protein_coding chr10:126205754 chr10:126205766 synonymous SNV . 0 33 hm5C_associated_SNPs_46250 0 0 0 0 2 LHPP chr10:126205840 5'GT 126205840 Upstream 75bp
chr16 68104961 68104961 1 + A G UCEC 68104973 + 68104953 68104993 41 TCTTCCTCAAGGAGGGTCTGCGGCCCCTGGAGGAGGTCATG TCTTCCTCGAGGAGGGTCTGCGGCCCCTGGAGGAGGTCATG < 41bp 1 0.263483305997233 1 0.568089962005615 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68104973 chr16:68104961 nonsynonymous SNV 0.999 0 9 hm5C_associated_SNPs_46251 0 0 1 0 1 DUS2 chr16:68105011 5'GT 68105011 Upstream 51bp
chr7 149426313 149426313 1 + G T UCEC 149426306 + 149426286 149426326 41 GGCTGAGGCCTGCGAGTCAGCCGTCTCGGGCAGGGTAGGGG GGCTGAGGCCTGCGAGTCAGCCGTCTCTGGCAGGGTAGGGG < 41bp 1 0.0348279214973016 1 0.335925459861755 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149426306 chr7:149426313 nonsynonymous SNV 0.001 2 28 hm5C_associated_SNPs_46252 0 0 0 0 1 KRBA1 chr7:149426279 3'AG 149426279 Downstream 35bp
chr19 14024278 14024278 1 + C T UCEC 14024290 + 14024270 14024310 41 GGACATCCCGCCGCCAGTGGCCATAGGAAAAGGCCCGGCGT GGACATCCTGCCGCCAGTGGCCATAGGAAAAGGCCCGGCGT < 41bp 1 0.269513656204536 1 0.215042024850845 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14024290 chr19:14024278 nonsynonymous SNV 0.163 4 9 hm5C_associated_SNPs_46253 0 0 1 0 1 CC2D1A chr19:14024217 3'AG 14024217 Downstream 62bp
chr19 1041933 1041933 1 + C T UCEC 1041928 + 1041908 1041948 41 CCTGCTTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGC CCTGCTTTCCGCAGCTGACACCGGGTGAGGAGCCCGGGCGC < 41bp 1 0.687163040677139 1 0.831888318061829 experiment 0.625673918645723 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041928 chr19:1041933 synonymous SNV . 0 26 hm5C_associated_SNPs_46254 0 0 0 0 1 ABCA7 chr19:1041971 5'GT 1041971 Upstream 39bp
chr19 1041933 1041933 1 + C T UCEC 1041929 + 1041909 1041949 41 CTGCTTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGCC CTGCTTTCCGCAGCTGACACCGGGTGAGGAGCCCGGGCGCC < 41bp 1 0.531734972612922 1 0.931938409805298 experiment 0.936530054774156 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041929 chr19:1041933 synonymous SNV . 0 25 hm5C_associated_SNPs_46255 0 0 0 0 1 ABCA7 chr19:1041971 5'GT 1041971 Upstream 39bp
chr19 1041933 1041933 1 + C T UCEC 1041940 + 1041920 1041960 41 AGCTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTC AGCTGACACCGGGTGAGGAGCCCGGGCGCCTGAGCAACTTC < 41bp 1 0.329948917536315 1 0.414792418479919 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041940 chr19:1041933 synonymous SNV . 0 14 hm5C_associated_SNPs_46256 0 0 0 0 1 ABCA7 chr19:1041971 5'GT 1041971 Upstream 39bp
chr19 1041933 1041933 1 + C T UCEC 1041941 + 1041921 1041961 41 GCTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCA GCTGACACCGGGTGAGGAGCCCGGGCGCCTGAGCAACTTCA < 41bp 1 0.365221169671122 1 0.860300064086914 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041941 chr19:1041933 synonymous SNV . 0 13 hm5C_associated_SNPs_46257 0 0 0 0 1 ABCA7 chr19:1041971 5'GT 1041971 Upstream 39bp
chr19 1041933 1041933 1 + C T UCEC 1041942 + 1041922 1041962 41 CTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCAA CTGACACCGGGTGAGGAGCCCGGGCGCCTGAGCAACTTCAA < 41bp 1 0.389266834708698 1 0.787719249725342 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041942 chr19:1041933 synonymous SNV . 0 12 hm5C_associated_SNPs_46258 0 0 0 0 1 ABCA7 chr19:1041971 5'GT 1041971 Upstream 39bp
chr11 63997002 63997002 1 + G A UCEC 63997000 + 63996980 63997020 41 GCACTACCTGAGTGGGGGACCCGAGGCCCACGAGTCTACAG GCACTACCTGAGTGGGGGACCCAAGGCCCACGAGTCTACAG < 41bp 1 0.304923961783368 1 0.859289169311523 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997000 chr11:63997002 nonsynonymous SNV 0.838 4 23 hm5C_associated_SNPs_46259 0 0 0 0 2 NUDT22 chr11:63996950 3'AG 63996950 Downstream 53bp
chr11 63997002 63997002 1 + G A UCEC 63997000 + 63996980 63997020 41 GCACTACCTGAGTGGGGGACCCGAGGCCCACGAGTCTACAG GCACTACCTGAGTGGGGGACCCAAGGCCCACGAGTCTACAG < 41bp 1 0.304923961783368 1 0.859289169311523 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997000 chr11:63997002 nonsynonymous SNV 0.838 4 23 hm5C_associated_SNPs_46259 0 0 0 0 2 NUDT22 chr11:63997043 5'GT 63997043 Upstream 42bp
chrX 24073092 24073092 1 + G A UCEC 24073094 + 24073074 24073114 41 TCTTTTGGCAACATGGCGGGCGGAGAAGCTGGAGTGACTCT TCTTTTGGCAACATGGCGAGCGGAGAAGCTGGAGTGACTCT < 41bp 1 0.727545946636636 1 0.500620722770691 experiment 0.544908106726727 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF2S3 ENSG00000130741 CDS Human protein_coding chrX:24073094 chrX:24073092 nonsynonymous SNV 0.565 1 19 hm5C_associated_SNPs_46260 0 0 1 0 1 EIF2S3 chrX:24073154 5'GT 24073154 Upstream 63bp
chr15 41105602 41105602 1 + G C UCEC 41105590 + 41105570 41105610 41 TGACGACGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGC TGACGACGAGGATGAGGAGACAGCCATCCAAACAGTCCTGC < 41bp 1 0.495829173396495 1 0.204461663961411 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105590 chr15:41105602 nonsynonymous SNV 0.998 4 33 hm5C_associated_SNPs_46261 0 0 0 0 2 ZFYVE19 chr15:41105536 3'AG 41105536 Downstream 67bp
chr15 41105602 41105602 1 + G C UCEC 41105590 + 41105570 41105610 41 TGACGACGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGC TGACGACGAGGATGAGGAGACAGCCATCCAAACAGTCCTGC < 41bp 1 0.495829173396495 1 0.204461663961411 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105590 chr15:41105602 nonsynonymous SNV 0.998 4 33 hm5C_associated_SNPs_46261 0 0 0 0 2 ZFYVE19 chr15:41105615 5'GT 41105615 Upstream 14bp
chr8 104452453 104452453 1 + T C UCEC 104452461 + 104452441 104452481 41 GATCTGATGAAATGAACATTCGCCTGTGGAAAGCTAATGCT GATCTGATGAAACGAACATTCGCCTGTGGAAAGCTAATGCT < 41bp 1 0.759959114209145 1 0.245071172714233 experiment 0.48008177158171 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104452461 chr8:104452453 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_46262 0 0 1 0 1 DCAF13 chr8:104452364 3'AG 104452364 Downstream 90bp
chr10 126205752 126205752 1 + G A UCEC 126205754 + 126205734 126205774 41 TCACTGCCGTGACAGGCCGTCATGATTGGGGACGATATCGT TCACTGCCGTGACAGGCCATCATGATTGGGGACGATATCGT < 41bp 1 0.592471519700503 1 0.255131483078003 experiment 0.815056960598994 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LHPP ENSG00000107902 CDS Human protein_coding chr10:126205754 chr10:126205752 nonsynonymous SNV 0.997 0 19 hm5C_associated_SNPs_46263 0 0 0 0 2 LHPP chr10:126205749 3'AG 126205749 Downstream 4bp
chr10 126205752 126205752 1 + G A UCEC 126205754 + 126205734 126205774 41 TCACTGCCGTGACAGGCCGTCATGATTGGGGACGATATCGT TCACTGCCGTGACAGGCCATCATGATTGGGGACGATATCGT < 41bp 1 0.592471519700503 1 0.255131483078003 experiment 0.815056960598994 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LHPP ENSG00000107902 CDS Human protein_coding chr10:126205754 chr10:126205752 nonsynonymous SNV 0.997 0 19 hm5C_associated_SNPs_46263 0 0 0 0 2 LHPP chr10:126205840 5'GT 126205840 Upstream 89bp
chr17 60768361 60768361 1 + G A UCEC 60768363 + 60768343 60768383 41 TGAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGC TGAACTACTCCAACTGGGAGCCCCCGGGCTTGGGCCCCAGC < 41bp 1 0.0393081887934709 1 0.180947184562683 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768363 chr17:60768361 nonsynonymous SNV 0.682 1 19 hm5C_associated_SNPs_46265 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 52bp
chr17 60768361 60768361 1 + G A UCEC 60768364 + 60768344 60768384 41 GAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGCA GAACTACTCCAACTGGGAGCCCCCGGGCTTGGGCCCCAGCA < 41bp 1 0.179533839439307 1 0.736636638641357 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768364 chr17:60768361 nonsynonymous SNV 0.682 1 18 hm5C_associated_SNPs_46266 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 52bp
chr17 60768361 60768361 1 + G A UCEC 60768365 + 60768345 60768385 41 AACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGCAT AACTACTCCAACTGGGAGCCCCCGGGCTTGGGCCCCAGCAT < 41bp 1 0.278732189956025 1 0.866318345069885 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768365 chr17:60768361 nonsynonymous SNV 0.682 1 17 hm5C_associated_SNPs_46267 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 52bp
chr17 60768361 60768361 1 + G A UCEC 60768377 + 60768357 60768397 41 TGGGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAA TGGGAGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAA < 41bp 1 0.395328595059909 1 0.215926051139832 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768377 chr17:60768361 nonsynonymous SNV 0.682 1 5 hm5C_associated_SNPs_46268 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 52bp
chr17 60768361 60768361 1 + G A UCEC 60768378 + 60768358 60768398 41 GGGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAAC GGGAGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAAC < 41bp 1 0.115951536380853 1 0.261010706424713 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768378 chr17:60768361 nonsynonymous SNV 0.682 1 4 hm5C_associated_SNPs_46269 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 52bp
chr17 60768361 60768361 1 + G A UCEC 60768379 + 60768359 60768399 41 GGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACA GGAGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACA < 41bp 1 0.0816602702342588 1 0.294061660766602 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768379 chr17:60768361 nonsynonymous SNV 0.682 1 3 hm5C_associated_SNPs_46270 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 52bp
chr17 60768361 60768361 1 + G A UCEC 60768380 + 60768360 60768400 41 GGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACAG GAGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACAG < 41bp 1 0.616163982110186 1 0.555516481399536 experiment 0.767672035779628 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768380 chr17:60768361 nonsynonymous SNV 0.682 1 2 hm5C_associated_SNPs_46271 0 0 1 0 1 MRC2 chr17:60768310 3'AG 60768310 Downstream 52bp
chr2 201761827 201761827 1 + G A UCEC 201761826 + 201761806 201761846 41 TTCTACATACTGGAATGGGACGGTTATGCACACTGGATGAA TTCTACATACTGGAATGGGACAGTTATGCACACTGGATGAA < 41bp 1 0.233751622247701 1 0.0319335758686066 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NIF3L1 ENSG00000196290 CDS Human protein_coding chr2:201761826 chr2:201761827 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_46272 0 0 1 0 1 NIF3L1 chr2:201761799 3'AG 201761799 Downstream 29bp
chr16 19580908 19580908 1 + G A UCEC 19580890 + 19580870 19580910 41 TGTTTGCAGCCACTGCTGACCCCGCAGCCTTGGCAGCTGCC TGTTTGCAGCCACTGCTGACCCCGCAGCCTTGGCAGCTACC < 41bp 1 0.261198871419193 1 0.263618111610413 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19580890 chr16:19580908 nonsynonymous SNV 0.004 0 39 hm5C_associated_SNPs_46273 0 0 0 0 1 C16orf62 chr16:19580913 5'GT 19580913 Upstream 6bp
chr15 43632501 43632501 1 + C T UCEC 43632491 + 43632471 43632511 41 AGATGTCATAAAAGAATTTGCAGATGACGGCGTCAAGTACC AGATGTCATAAAAGAATTTGCAGATGACGGTGTCAAGTACC < 41bp 1 0.408233731022185 1 0.646604299545288 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ADAL ENSG00000168803 CDS Human protein_coding chr15:43632491 chr15:43632501 synonymous SNV . 0 31 hm5C_associated_SNPs_46274 0 0 1 0 1 ADAL chr15:43632550 5'GT 43632550 Upstream 50bp
chr16 56867238 56867238 1 + G A UCEC 56867224 + 56867204 56867244 41 GCAGTTGCCTTTCTTTTCCGCATGGAGCGGCTGCGCTGCCA GCAGTTGCCTTTCTTTTCCGCATGGAGCGGCTGCACTGCCA < 41bp 1 0.446386791038303 1 0.102177023887634 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP93 ENSG00000102900 CDS Human protein_coding chr16:56867224 chr16:56867238 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_46275 0 0 1 0 1 NUP93 chr16:56867318 5'GT 56867318 Upstream 81bp
chr15 101169707 101169707 1 + C T UCEC 101169701 + 101169681 101169721 41 CTCTTCACTATGCAGCCATGCATGGCCGGGCCCGCATTGCA CTCTTCACTATGCAGCCATGCATGGCTGGGCCCGCATTGCA < 41bp 1 0.46036108640579 1 0.035459041595459 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ASB7 ENSG00000183475 CDS Human protein_coding chr15:101169701 chr15:101169707 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_46276 0 0 1 0 1 ASB7 chr15:101169642 3'AG 101169642 Downstream 66bp
chr1 186106670 186106670 1 + C T UCEC 186106679 + 186106659 186106699 41 TGGAGAGCCTGCAGTGTCACCTGTGGAAAAGGCATCCAAAA TGGAGAGCCTGTAGTGTCACCTGTGGAAAAGGCATCCAAAA < 41bp 1 0.139712495269185 1 0.492576450109482 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HMCN1 ENSG00000143341 CDS Human protein_coding chr1:186106679 chr1:186106670 synonymous SNV . 0 12 hm5C_associated_SNPs_46277 0 0 0 0 1 HMCN1 chr1:186106630 3'AG 186106630 Downstream 41bp
chr1 43900122 43900122 1 + G T UCEC 43900109 + 43900089 43900129 41 CTGAGTGTCGCCACCTGCAGCAGCTCCTGGTGAGGCGAGTT CTGAGTGTCGCCACCTGCAGCAGCTCCTGGTGATGCGAGTT < 41bp 1 0.104935202272359 1 0.471490681171417 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43900109 chr1:43900122 nonsynonymous SNV 0.999 3 34 hm5C_associated_SNPs_46278 0 0 1 0 2 SZT2 chr1:43900057 3'AG 43900057 Downstream 66bp
chr1 43900122 43900122 1 + G T UCEC 43900109 + 43900089 43900129 41 CTGAGTGTCGCCACCTGCAGCAGCTCCTGGTGAGGCGAGTT CTGAGTGTCGCCACCTGCAGCAGCTCCTGGTGATGCGAGTT < 41bp 1 0.104935202272359 1 0.471490681171417 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43900109 chr1:43900122 nonsynonymous SNV 0.999 3 34 hm5C_associated_SNPs_46278 0 0 1 0 2 SZT2 chr1:43900156 5'GT 43900156 Upstream 35bp
chr11 107917088 107917088 1 + G A UCEC 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGTTTATTAAGCAAACACAGGCAGTAAGTTCTACATGC < 41bp 1 0.516094730374704 1 0.502670049667358 experiment 0.967810539250593 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917088 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_46279 0 0 1 1 2 CUL5 chr11:107916997 3'AG 107916997 Downstream 92bp
chr11 107917088 107917088 1 + G A UCEC 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGTTTATTAAGCAAACACAGGCAGTAAGTTCTACATGC < 41bp 1 0.516094730374704 1 0.502670049667358 experiment 0.967810539250593 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917088 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_46279 0 0 1 1 2 CUL5 chr11:107917096 5'GT 107917096 Upstream 9bp
chr11 20139709 20139709 1 + G A UCEC 20139725 + 20139705 20139745 41 GGCAGCCAACTACTCCAGCCCCCAGAGCTATGACAGCGACT GGCAACCAACTACTCCAGCCCCCAGAGCTATGACAGCGACT < 41bp 1 0.0586670951025296 1 0.47314265370369 experiment 1 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:20139725 chr11:20139709 nonsynonymous SNV 0.994 4 5 hm5C_associated_SNPs_46280 0 0 1 0 1 NAV2 chr11:20139679 3'AG 20139679 Downstream 31bp
chr17 73489156 73489156 1 + A G UCEC 73489149 + 73489129 73489169 41 CGGCGGCCTCCCCTCAGCCACATGATCAGCCTCTTCATTAA CGGCGGCCTCCCCTCAGCCACATGATCGGCCTCTTCATTAA < 41bp 1 0.520349492789163 1 0.0825403332710266 experiment 0.959301014421674 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73489149 chr17:73489156 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_46282 0 0 1 0 1 TMEM94 chr17:73489183 5'GT 73489183 Upstream 28bp
chr1 153617540 153617540 1 + G A UCEC 153617536 + 153617516 153617556 41 TTTTTTTTTTCCCCTTTGGGCCAGGTCGGGGTATGATAGGT TTTTTTTTTTCCCCTTTGGGCCAGATCGGGGTATGATAGGT < 41bp 1 0.18796894792723 1 0.395487934350967 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHTOP ENSG00000160679 CDS Human protein_coding chr1:153617536 chr1:153617540 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_46284 0 0 1 0 1 CHTOP chr1:153617540 3'AG 153617540 Downstream 1bp
chr1 153617540 153617540 1 + G A UCEC 153617537 + 153617517 153617557 41 TTTTTTTTTCCCCTTTGGGCCAGGTCGGGGTATGATAGGTC TTTTTTTTTCCCCTTTGGGCCAGATCGGGGTATGATAGGTC < 41bp 1 0.0695031785581197 1 0.304279327392578 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CHTOP ENSG00000160679 CDS Human protein_coding chr1:153617537 chr1:153617540 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_46285 0 0 1 0 1 CHTOP chr1:153617540 3'AG 153617540 Downstream 1bp
chr7 99751517 99751517 1 + T C UCEC 99751531 + 99751511 99751551 41 TGCTGGTGACGGTGTCAGGACAGAGGGTGTTTGTGGTGAAG TGCTGGCGACGGTGTCAGGACAGAGGGTGTTTGTGGTGAAG < 41bp 1 0.683379408544662 1 0.603875517845154 experiment 0.633241182910675 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMTOR4 ENSG00000188186 CDS Human protein_coding chr7:99751531 chr7:99751517 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_46286 0 0 1 0 1 LAMTOR4 chr7:99751490 3'AG 99751490 Downstream 28bp
chr12 123463643 123463643 1 + T C UCEC 123463637 + 123463617 123463657 41 GTGCCATCTGCAGGCACCCACAGCCCTGACGGAGCCCCTGG GTGCCATCTGCAGGCACCCACAGCCCCGACGGAGCCCCTGG < 41bp 1 0.676208928670335 1 0.795725345611572 experiment 0.647582142659329 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGFOD2 ENSG00000111325 CDS Human protein_coding chr12:123463637 chr12:123463643 nonsynonymous SNV 0.032 1 27 hm5C_associated_SNPs_46287 0 0 1 0 1 OGFOD2 chr12:123463630 3'AG 123463630 Downstream 14bp
chr20 30753177 30753177 1 + C T UCEC 30753183 + 30753163 30753203 41 CTTCTGGCTGCTAACGGGTACCATCGGCTTCTATGCAGCCT CTTCTGGCTGCTAATGGGTACCATCGGCTTCTATGCAGCCT < 41bp 1 0.0379754907994016 1 0.139955192804337 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30753183 chr20:30753177 nonsynonymous SNV 0.998 4 15 hm5C_associated_SNPs_46288 0 0 1 0 1 TM9SF4 chr20:30753098 3'AG 30753098 Downstream 80bp
chr19 4954457 4954457 1 + G A UCEC 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGGGGGGCTTCGCATCCCCCAGGACGGGCAAGG < 41bp 1 0.253518371248529 1 0.484435677528381 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954457 . . 0 22 hm5C_associated_SNPs_46290 0 0 0 0 2 UHRF1 chr19:4954362 3'AG 4954362 Downstream 96bp
chr19 4954457 4954457 1 + G A UCEC 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGGGGGGCTTCGCATCCCCCAGGACGGGCAAGG < 41bp 1 0.253518371248529 1 0.484435677528381 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954457 . . 0 22 hm5C_associated_SNPs_46290 0 0 0 0 2 UHRF1 chr19:4954500 5'GT 4954500 Upstream 44bp
chr19 4954457 4954457 1 + G A UCEC 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGGGGGGCTTCGCATCCCCCAGGACGGGCAAGGGCAA < 41bp 1 0.676168636472353 1 0.536575376987457 experiment 0.647662727055295 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954457 . . 0 18 hm5C_associated_SNPs_46291 0 0 0 0 2 UHRF1 chr19:4954362 3'AG 4954362 Downstream 96bp
chr19 4954457 4954457 1 + G A UCEC 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGGGGGGCTTCGCATCCCCCAGGACGGGCAAGGGCAA < 41bp 1 0.676168636472353 1 0.536575376987457 experiment 0.647662727055295 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954457 . . 0 18 hm5C_associated_SNPs_46291 0 0 0 0 2 UHRF1 chr19:4954500 5'GT 4954500 Upstream 44bp
chr7 73731885 73731885 1 + G T UCEC 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AATCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA < 41bp 1 0.301227171075101 1 0.294834136962891 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731885 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_46295 0 0 0 0 1 CLIP2 chr7:73731810 3'AG 73731810 Downstream 76bp
chr7 73731885 73731885 1 + G T UCEC 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC ATCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC < 41bp 1 0.42565295895453 1 0.271468162536621 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731885 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_46296 0 0 0 0 1 CLIP2 chr7:73731810 3'AG 73731810 Downstream 76bp
chr7 73731885 73731885 1 + G T UCEC 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT TCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT < 41bp 1 0.152663167273748 1 0.475224256515503 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731885 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_46297 0 0 0 0 1 CLIP2 chr7:73731810 3'AG 73731810 Downstream 76bp
chr14 93043733 93043733 1 + C T UCEC 93043725 + 93043705 93043745 41 ATGTTCCTGGTTCGCCGGGACAGCAGCTCGAAGCAGCTGGT ATGTTCCTGGTTCGCCGGGACAGCAGCTTGAAGCAGCTGGT < 41bp 1 0.453087123858586 1 0.466569930315018 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93043725 chr14:93043733 nonsynonymous SNV 0.003 0 29 hm5C_associated_SNPs_46300 0 0 0 0 2 RIN3 chr14:93043705 3'AG 93043705 Downstream 29bp
chr14 93043733 93043733 1 + C T UCEC 93043725 + 93043705 93043745 41 ATGTTCCTGGTTCGCCGGGACAGCAGCTCGAAGCAGCTGGT ATGTTCCTGGTTCGCCGGGACAGCAGCTTGAAGCAGCTGGT < 41bp 1 0.453087123858586 1 0.466569930315018 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93043725 chr14:93043733 nonsynonymous SNV 0.003 0 29 hm5C_associated_SNPs_46300 0 0 0 0 2 RIN3 chr14:93043822 5'GT 93043822 Upstream 90bp
chr1 162470026 162470026 1 + G T UCEC 162470019 + 162469999 162470039 41 CTCATTGACTTTGGACTTAGCTTCAAAGAAGGCAATCAGGT CTCATTGACTTTGGACTTAGCTTCAAATAAGGCAATCAGGT < 41bp 1 0.364904837395018 1 0.184536665678024 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162470019 chr1:162470026 stopgain 1.000 1 28 hm5C_associated_SNPs_46303 0 0 1 0 1 UHMK1 chr1:162470037 5'GT 162470037 Upstream 12bp
chr17 28788917 28788917 1 + T G UCEC 28788910 + 28788890 28788930 41 TTCAGGTTCACAAGGGAGTTCATGGATTTGTTAAAGATAAG TTCAGGTTCACAAGGGAGTTCATGGATGTGTTAAAGATAAG < 41bp 1 0.147231526112709 1 0.180398404598236 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28788910 chr17:28788917 nonsynonymous SNV 0.997 0 28 hm5C_associated_SNPs_46304 0 0 1 0 1 CPD chr17:28788895 3'AG 28788895 Downstream 23bp
chr18 77728123 77728123 1 + G T UCEC 77728106 + 77728086 77728126 41 TACTGGAAGAAATGGGAAATCGCATTGAGGACTTACAGAAG TACTGGAAGAAATGGGAAATCGCATTGAGGACTTACATAAG < 41bp 1 0.621547597730002 1 0.521802663803101 experiment 0.756904804539997 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSBP1L1 ENSG00000226742 CDS Human protein_coding chr18:77728106 chr18:77728123 nonsynonymous SNV 0.975 3 38 hm5C_associated_SNPs_46306 0 0 1 0 1 HSBP1L1 chr18:77728183 5'GT 77728183 Upstream 61bp
chr2 75882236 75882236 1 + G A UCEC 75882235 + 75882215 75882255 41 CCTGGTCTAAACGCTGGGAACGTCCAAATTTTAATATTAAA CCTGGTCTAAACGCTGGGAACATCCAAATTTTAATATTAAA < 41bp 1 0.0625109626183063 1 0.176600992679596 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRPL19 ENSG00000115364 CDS Human protein_coding chr2:75882235 chr2:75882236 nonsynonymous SNV 0.982 2 22 hm5C_associated_SNPs_46307 0 0 1 0 1 MRPL19 chr2:75882190 3'AG 75882190 Downstream 47bp
chr19 14037637 14037637 1 + G T UCEC 14037657 + 14037637 14037677 41 GAAGCTCAGAAAGACAAGACCAGTGTGATCAAGAACACAGA TAAGCTCAGAAAGACAAGACCAGTGTGATCAAGAACACAGA < 41bp 1 0.219374587266756 1 0.156742781400681 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14037657 chr19:14037637 stopgain 0.994 1 1 hm5C_associated_SNPs_46308 0 0 0 0 2 CC2D1A chr19:14037634 3'AG 14037634 Downstream 4bp
chr19 14037637 14037637 1 + G T UCEC 14037657 + 14037637 14037677 41 GAAGCTCAGAAAGACAAGACCAGTGTGATCAAGAACACAGA TAAGCTCAGAAAGACAAGACCAGTGTGATCAAGAACACAGA < 41bp 1 0.219374587266756 1 0.156742781400681 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14037657 chr19:14037637 stopgain 0.994 1 1 hm5C_associated_SNPs_46308 0 0 0 0 2 CC2D1A chr19:14037685 5'GT 14037685 Upstream 49bp
chr5 154179522 154179522 1 + T C UCEC 154179534 + 154179514 154179554 41 AGGGCCTGTCTGCCAGCCTGCCTGACCTGGATTCTGAGAAC AGGGCCTGCCTGCCAGCCTGCCTGACCTGGATTCTGAGAAC < 41bp 1 0.24282547671622 1 0.046968400478363 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154179534 chr5:154179522 nonsynonymous SNV 0.998 4 9 hm5C_associated_SNPs_46309 0 0 1 0 1 LARP1 chr5:154179602 5'GT 154179602 Upstream 81bp
chr19 1084254 1084254 1 + G A UCEC 1084244 + 1084224 1084264 41 TCTGCACTTGCAGGACGAGTCATCCAACCAGCGAGCTGAGG TCTGCACTTGCAGGACGAGTCATCCAACCAACGAGCTGAGG < 41bp 1 0.0902420953327887 1 0.0530829131603241 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1084244 chr19:1084254 synonymous SNV . 0 31 hm5C_associated_SNPs_46310 0 0 1 0 2 ARHGAP45 chr19:1084237 3'AG 1084237 Downstream 18bp
chr19 1084254 1084254 1 + G A UCEC 1084244 + 1084224 1084264 41 TCTGCACTTGCAGGACGAGTCATCCAACCAGCGAGCTGAGG TCTGCACTTGCAGGACGAGTCATCCAACCAACGAGCTGAGG < 41bp 1 0.0902420953327887 1 0.0530829131603241 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1084244 chr19:1084254 synonymous SNV . 0 31 hm5C_associated_SNPs_46310 0 0 1 0 2 ARHGAP45 chr19:1084345 5'GT 1084345 Upstream 92bp
chr18 61648980 61648980 1 + T C UCEC 61648969 + 61648949 61648989 41 TTGCAGGACTTTAAAGAATACTGTCAGAAGTTCTATCAGGC TTGCAGGACTTTAAAGAATACTGTCAGAAGTCCTATCAGGC < 41bp 1 0.16238902706856 1 0.123280137777328 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61648969 chr18:61648980 nonsynonymous SNV 0.767 5 32 hm5C_associated_SNPs_46311 0 0 0 0 1 SERPINB8 chr18:61648955 3'AG 61648955 Downstream 26bp
chr15 74917251 74917251 1 + C A UCEC 74917240 + 74917220 74917260 41 TCTGTTTCCTTCCCGGGTACCAGAGGGAAGTCTCAGGTTGC TCTGTTTCCTTCCCGGGTACCAGAGGGAAGTATCAGGTTGC < 41bp 1 0.338889374695912 1 0.777703642845154 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLK3 ENSG00000179335 CDS Human other chr15:74917240 chr15:74917251 nonsynonymous SNV 0.999 1 32 hm5C_associated_SNPs_46312 0 0 1 0 2 CLK3 chr15:74917243 3'AG 74917243 Downstream 9bp
chr15 74917251 74917251 1 + C A UCEC 74917240 + 74917220 74917260 41 TCTGTTTCCTTCCCGGGTACCAGAGGGAAGTCTCAGGTTGC TCTGTTTCCTTCCCGGGTACCAGAGGGAAGTATCAGGTTGC < 41bp 1 0.338889374695912 1 0.777703642845154 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLK3 ENSG00000179335 CDS Human protein_coding chr15:74917240 chr15:74917251 nonsynonymous SNV 0.999 1 32 hm5C_associated_SNPs_46312 0 0 1 0 2 CLK3 chr15:74917245 3'AG 74917245 Downstream 7bp
chr6 33243786 33243786 1 + G T UCEC 33243772 + 33243752 33243792 41 TGATCACCATTATGCAGAATCCACGCCAGTACAAGATCCCA TGATCACCATTATGCAGAATCCACGCCAGTACAATATCCCA < 41bp 1 0.234185417939206 1 0.0510599911212921 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243772 chr6:33243786 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_46313 0 0 1 0 2 RPS18 chr6:33243742 3'AG 33243742 Downstream 45bp
chr6 33243786 33243786 1 + G T UCEC 33243772 + 33243752 33243792 41 TGATCACCATTATGCAGAATCCACGCCAGTACAAGATCCCA TGATCACCATTATGCAGAATCCACGCCAGTACAATATCCCA < 41bp 1 0.234185417939206 1 0.0510599911212921 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243772 chr6:33243786 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_46313 0 0 1 0 2 RPS18 chr6:33243843 5'GT 33243843 Upstream 58bp
chr6 33243786 33243786 1 + G T UCEC 33243783 + 33243763 33243803 41 ATGCAGAATCCACGCCAGTACAAGATCCCAGACTGGTTCTT ATGCAGAATCCACGCCAGTACAATATCCCAGACTGGTTCTT < 41bp 1 0.461490414269459 1 0.0322167277336121 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243783 chr6:33243786 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_46314 0 0 1 0 2 RPS18 chr6:33243742 3'AG 33243742 Downstream 45bp
chr6 33243786 33243786 1 + G T UCEC 33243783 + 33243763 33243803 41 ATGCAGAATCCACGCCAGTACAAGATCCCAGACTGGTTCTT ATGCAGAATCCACGCCAGTACAATATCCCAGACTGGTTCTT < 41bp 1 0.461490414269459 1 0.0322167277336121 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243783 chr6:33243786 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_46314 0 0 1 0 2 RPS18 chr6:33243843 5'GT 33243843 Upstream 58bp
chr13 99042340 99042340 1 + G A UCEC 99042342 + 99042322 99042362 41 AAACCAAAGCCCAAGCCCGTCCTCTTTAGCCGGGGGTCATC AAACCAAAGCCCAAGCCCATCCTCTTTAGCCGGGGGTCATC < 41bp 1 0.042148829160997 1 0.0225205719470978 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99042342 chr13:99042340 nonsynonymous SNV 0.994 4 19 hm5C_associated_SNPs_46315 0 0 1 0 1 FARP1 chr13:99042374 5'GT 99042374 Upstream 35bp
chr7 139094358 139094358 1 + G A UCEC 139094341 + 139094321 139094361 41 GAGAAGCAGGAGAAAAGAAACCAGGAACGGCTGAAACGAAG GAGAAGCAGGAGAAAAGAAACCAGGAACGGCTGAAACAAAG < 41bp 1 0.48694811053125 1 0.475083231925964 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094341 chr7:139094358 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_46316 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 50bp
chr7 139094358 139094358 1 + G A UCEC 139094341 + 139094321 139094361 41 GAGAAGCAGGAGAAAAGAAACCAGGAACGGCTGAAACGAAG GAGAAGCAGGAGAAAAGAAACCAGGAACGGCTGAAACAAAG < 41bp 1 0.48694811053125 1 0.475083231925964 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094341 chr7:139094358 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_46316 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 43bp
chr7 139094358 139094358 1 + G A UCEC 139094348 + 139094328 139094368 41 AGGAGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAG AGGAGAAAAGAAACCAGGAACGGCTGAAACAAAGAGAAGAG < 41bp 1 0.572533591055492 1 0.333676993846893 experiment 0.854932817889016 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094348 chr7:139094358 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_46317 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 50bp
chr7 139094358 139094358 1 + G A UCEC 139094348 + 139094328 139094368 41 AGGAGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAG AGGAGAAAAGAAACCAGGAACGGCTGAAACAAAGAGAAGAG < 41bp 1 0.572533591055492 1 0.333676993846893 experiment 0.854932817889016 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094348 chr7:139094358 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_46317 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 43bp
chr7 139094358 139094358 1 + G A UCEC 139094351 + 139094331 139094371 41 AGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGA AGAAAAGAAACCAGGAACGGCTGAAACAAAGAGAAGAGAGA < 41bp 1 0.477984449641255 1 0.461202383041382 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094351 chr7:139094358 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_46318 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 50bp
chr7 139094358 139094358 1 + G A UCEC 139094351 + 139094331 139094371 41 AGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGA AGAAAAGAAACCAGGAACGGCTGAAACAAAGAGAAGAGAGA < 41bp 1 0.477984449641255 1 0.461202383041382 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094351 chr7:139094358 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_46318 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 43bp
chr7 139094358 139094358 1 + G A UCEC 139094357 + 139094337 139094377 41 GAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGAGAGAGA GAAACCAGGAACGGCTGAAACAAAGAGAAGAGAGAGAGAGA < 41bp 1 0.585331996954864 1 0.790554523468018 experiment 0.829336006090272 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094357 chr7:139094358 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_46319 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 50bp
chr7 139094358 139094358 1 + G A UCEC 139094357 + 139094337 139094377 41 GAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGAGAGAGA GAAACCAGGAACGGCTGAAACAAAGAGAAGAGAGAGAGAGA < 41bp 1 0.585331996954864 1 0.790554523468018 experiment 0.829336006090272 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094357 chr7:139094358 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_46319 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 43bp
chr12 109629526 109629526 1 + C T UCEC 109629531 + 109629511 109629551 41 CCAGAACAACGACATCGACACCGGGTGGTTGGACTACCTCA CCAGAACAACGACATTGACACCGGGTGGTTGGACTACCTCA < 41bp 1 0.315667984613672 1 0.564565300941467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109629531 chr12:109629526 synonymous SNV . 0 16 hm5C_associated_SNPs_46321 0 0 1 0 1 ACACB chr12:109629568 5'GT 109629568 Upstream 43bp
chr2 203157506 203157506 1 + G T UCEC 203157511 + 203157491 203157531 41 TTATACTAGGTGATTGAAATCTCTGAATATCGAACCCAGCT TTATACTAGGTGATTTAAATCTCTGAATATCGAACCCAGCT < 41bp 1 0.488239110448174 1 0.474218815565109 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOP58 ENSG00000055044 CDS Human protein_coding chr2:203157511 chr2:203157506 stopgain 0.995 1 16 hm5C_associated_SNPs_46322 0 0 1 0 1 NOP58 chr2:203157500 3'AG 203157500 Downstream 7bp
chrX 107838787 107838787 1 + G A UCEC 107838784 + 107838764 107838804 41 CTGCATTGGAACTGGTATTTCAGGGCCTCCAGGTCAACCTG CTGCATTGGAACTGGTATTTCAGAGCCTCCAGGTCAACCTG < 41bp 1 0.641146317333832 1 0.550340473651886 experiment 0.717707365332335 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107838784 chrX:107838787 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_46323 1 0 1 0 2 COL4A5 chrX:107838739 3'AG 107838739 Downstream 49bp
chrX 107838787 107838787 1 + G A UCEC 107838784 + 107838764 107838804 41 CTGCATTGGAACTGGTATTTCAGGGCCTCCAGGTCAACCTG CTGCATTGGAACTGGTATTTCAGAGCCTCCAGGTCAACCTG < 41bp 1 0.641146317333832 1 0.550340473651886 experiment 0.717707365332335 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107838784 chrX:107838787 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_46323 1 0 1 0 2 COL4A5 chrX:107838831 5'GT 107838831 Upstream 45bp
chr14 76286476 76286476 1 + G A UCEC 76286484 + 76286464 76286504 41 CCCCAAGCTCCCGAGAATCACTCCAGCTCTCCTGGAAGCAG CCCCAAGCTCCCAAGAATCACTCCAGCTCTCCTGGAAGCAG < 41bp 1 0.767151254089383 1 0.753298997879028 experiment 0.465697491821234 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TTLL5 ENSG00000119685 CDS Human protein_coding chr14:76286484 chr14:76286476 nonsynonymous SNV 0.628 3 13 hm5C_associated_SNPs_46324 0 0 0 0 1 TTLL5 chr14:76286504 5'GT 76286504 Upstream 29bp
chr13 52293459 52293459 1 + A G UCEC 52293456 + 52293436 52293476 41 GGCAGCGCCTGGGAGGTTATCGGACCAGTGCTGTGGCCTCA GGCAGCGCCTGGGAGGTTATCGGGCCAGTGCTGTGGCCTCA < 41bp 1 0.760361646898475 1 0.979871034622192 experiment 0.479276706203049 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDFY2 ENSG00000139668 CDS Human protein_coding chr13:52293456 chr13:52293459 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_46325 0 0 1 0 1 WDFY2 chr13:52293484 5'GT 52293484 Upstream 26bp
chr11 32118703 32118703 1 + C T UCEC 32118684 + 32118664 32118704 41 TCTTTTTTTTTTTTTTTGTACTGCAGGAAGATTGTTGATCG TCTTTTTTTTTTTTTTTGTACTGCAGGAAGATTGTTGATTG < 41bp 1 0.546146194933908 1 0.266208708286285 experiment 0.907707610132184 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RCN1 ENSG00000049449 CDS Human protein_coding chr11:32118684 chr11:32118703 stopgain 0.996 1 40 hm5C_associated_SNPs_46326 0 0 1 0 1 RCN1 chr11:32118690 3'AG 32118690 Downstream 14bp
chr11 32118703 32118703 1 + C T UCEC 32118687 + 32118667 32118707 41 TTTTTTTTTTTTTTGTACTGCAGGAAGATTGTTGATCGAAT TTTTTTTTTTTTTTGTACTGCAGGAAGATTGTTGATTGAAT < 41bp 1 0.501856235874518 1 0.485311090946198 experiment 0.996287528250964 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RCN1 ENSG00000049449 CDS Human protein_coding chr11:32118687 chr11:32118703 stopgain 0.996 1 37 hm5C_associated_SNPs_46327 0 0 1 0 1 RCN1 chr11:32118690 3'AG 32118690 Downstream 14bp
chr11 65780850 65780850 1 + G T UCEC 65780832 + 65780812 65780852 41 CTTGTGGTTCCCTGGCAGAACTCCTCTCAGCTCCTAAAGCA CTTGTGGTTCCCTGGCAGAACTCCTCTCAGCTCCTAAATCA < 41bp 1 0.45357442587274 1 0.209898918867111 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CST6 ENSG00000175315 CDS Human protein_coding chr11:65780832 chr11:65780850 nonsynonymous SNV 0.660 0 39 hm5C_associated_SNPs_46328 0 0 0 0 1 CST6 chr11:65780788 3'AG 65780788 Downstream 63bp
chr10 12191667 12191667 1 + A C UCEC 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT CATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT < 41bp 1 0.510811821153781 1 0.0423297584056854 experiment 0.978376357692439 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191667 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_46330 0 0 1 0 2 SEC61A2 chr10:12191594 3'AG 12191594 Downstream 74bp
chr10 12191667 12191667 1 + A C UCEC 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT CATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT < 41bp 1 0.510811821153781 1 0.0423297584056854 experiment 0.978376357692439 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191667 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_46330 0 0 1 0 2 SEC61A2 chr10:12191725 5'GT 12191725 Upstream 59bp
chr2 97875443 97875443 1 + G T UCEC 97875436 + 97875416 97875456 41 AGTGTCTTCTCGGAAAAAACCAGCCTTGAAGGTAATGAAAC AGTGTCTTCTCGGAAAAAACCAGCCTTTAAGGTAATGAAAC < 41bp 1 0.264336312205661 1 0.447724223136902 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD36 ENSG00000135976 CDS Human protein_coding chr2:97875436 chr2:97875443 nonsynonymous SNV 0.009 1 28 hm5C_associated_SNPs_46331 0 0 0 0 1 ANKRD36 chr2:97875446 5'GT 97875446 Upstream 4bp
chrX 70517769 70517769 1 + A G UCEC 70517781 + 70517761 70517801 41 AGGATTCAAGGGAACCTTCCCTGATGCGGTATATCTCCCAT AGGATTCAGGGGAACCTTCCCTGATGCGGTATATCTCCCAT < 41bp 1 0.677375181065156 1 0.257016718387604 experiment 0.645249637869688 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517781 chrX:70517769 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_46332 0 0 1 0 2 NONO chrX:70517686 3'AG 70517686 Downstream 84bp
chrX 70517769 70517769 1 + A G UCEC 70517781 + 70517761 70517801 41 AGGATTCAAGGGAACCTTCCCTGATGCGGTATATCTCCCAT AGGATTCAGGGGAACCTTCCCTGATGCGGTATATCTCCCAT < 41bp 1 0.677375181065156 1 0.257016718387604 experiment 0.645249637869688 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517781 chrX:70517769 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_46332 0 0 1 0 2 NONO chrX:70517788 5'GT 70517788 Upstream 20bp
chr1 183096387 183096387 1 + C T UCEC 183096385 + 183096365 183096405 41 TGACTGTCATCCTGAGGGATCTCTTTCACTTCAGTGCAAAG TGACTGTCATCCTGAGGGATCTTTTTCACTTCAGTGCAAAG < 41bp 1 0.0136831719000148 1 0.0213032364845276 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183096385 chr1:183096387 nonsynonymous SNV 0.986 0 23 hm5C_associated_SNPs_46333 0 0 1 0 1 LAMC1 chr1:183096361 3'AG 183096361 Downstream 27bp
chr1 183096387 183096387 1 + C T UCEC 183096391 + 183096371 183096411 41 TCATCCTGAGGGATCTCTTTCACTTCAGTGCAAAGATGATG TCATCCTGAGGGATCTTTTTCACTTCAGTGCAAAGATGATG < 41bp 1 0.100472849179673 1 0.115063726902008 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183096391 chr1:183096387 nonsynonymous SNV 0.986 0 17 hm5C_associated_SNPs_46334 0 0 1 0 1 LAMC1 chr1:183096361 3'AG 183096361 Downstream 27bp
chr7 6438343 6438343 1 + G A UCEC 6438341 + 6438321 6438361 41 CCTCCCGGGGCAAAGACAAGCCGATTGCCGTATGTAAAACT CCTCCCGGGGCAAAGACAAGCCAATTGCCGTATGTAAAACT < 41bp 1 0.070355152485587 1 0.114302515983582 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAC1 ENSG00000136238 CDS Human protein_coding chr7:6438341 chr7:6438343 synonymous SNV . 0 23 hm5C_associated_SNPs_46335 0 0 1 0 2 RAC1 chr7:6438293 3'AG 6438293 Downstream 51bp
chr7 6438343 6438343 1 + G A UCEC 6438341 + 6438321 6438361 41 CCTCCCGGGGCAAAGACAAGCCGATTGCCGTATGTAAAACT CCTCCCGGGGCAAAGACAAGCCAATTGCCGTATGTAAAACT < 41bp 1 0.070355152485587 1 0.114302515983582 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAC1 ENSG00000136238 CDS Human protein_coding chr7:6438341 chr7:6438343 synonymous SNV . 0 23 hm5C_associated_SNPs_46335 0 0 1 0 2 RAC1 chr7:6438349 5'GT 6438349 Upstream 7bp
chr7 6438343 6438343 1 + G A UCEC 6438342 + 6438322 6438362 41 CTCCCGGGGCAAAGACAAGCCGATTGCCGTATGTAAAACTT CTCCCGGGGCAAAGACAAGCCAATTGCCGTATGTAAAACTT < 41bp 1 0.150977789490783 1 0.212471276521683 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAC1 ENSG00000136238 CDS Human protein_coding chr7:6438342 chr7:6438343 synonymous SNV . 0 22 hm5C_associated_SNPs_46336 0 0 1 0 2 RAC1 chr7:6438293 3'AG 6438293 Downstream 51bp
chr7 6438343 6438343 1 + G A UCEC 6438342 + 6438322 6438362 41 CTCCCGGGGCAAAGACAAGCCGATTGCCGTATGTAAAACTT CTCCCGGGGCAAAGACAAGCCAATTGCCGTATGTAAAACTT < 41bp 1 0.150977789490783 1 0.212471276521683 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAC1 ENSG00000136238 CDS Human protein_coding chr7:6438342 chr7:6438343 synonymous SNV . 0 22 hm5C_associated_SNPs_46336 0 0 1 0 2 RAC1 chr7:6438349 5'GT 6438349 Upstream 7bp
chr7 6438343 6438343 1 + G A UCEC 6438348 + 6438328 6438368 41 GGGCAAAGACAAGCCGATTGCCGTATGTAAAACTTTCAGTC GGGCAAAGACAAGCCAATTGCCGTATGTAAAACTTTCAGTC < 41bp 1 0.360234308387322 1 0.278969466686249 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAC1 ENSG00000136238 CDS Human protein_coding chr7:6438348 chr7:6438343 synonymous SNV . 0 16 hm5C_associated_SNPs_46337 0 0 1 0 2 RAC1 chr7:6438293 3'AG 6438293 Downstream 51bp
chr7 6438343 6438343 1 + G A UCEC 6438348 + 6438328 6438368 41 GGGCAAAGACAAGCCGATTGCCGTATGTAAAACTTTCAGTC GGGCAAAGACAAGCCAATTGCCGTATGTAAAACTTTCAGTC < 41bp 1 0.360234308387322 1 0.278969466686249 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAC1 ENSG00000136238 CDS Human protein_coding chr7:6438348 chr7:6438343 synonymous SNV . 0 16 hm5C_associated_SNPs_46337 0 0 1 0 2 RAC1 chr7:6438349 5'GT 6438349 Upstream 7bp
chr12 56331286 56331286 1 + T C UCEC 56331284 + 56331264 56331304 41 AGCCTGGCACTGTTTCAATCCTTTGAGACTGGTCACTGCTT AGCCTGGCACTGTTTCAATCCTCTGAGACTGGTCACTGCTT < 41bp 1 0.37142093360437 1 0.332315623760223 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56331284 chr12:56331286 nonsynonymous SNV 0.744 3 23 hm5C_associated_SNPs_46338 0 0 1 0 3 DGKA chr12:56331192 3'AG 56331192 Downstream 95bp
chr12 56331286 56331286 1 + T C UCEC 56331284 + 56331264 56331304 41 AGCCTGGCACTGTTTCAATCCTTTGAGACTGGTCACTGCTT AGCCTGGCACTGTTTCAATCCTCTGAGACTGGTCACTGCTT < 41bp 1 0.37142093360437 1 0.332315623760223 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56331284 chr12:56331286 nonsynonymous SNV 0.744 3 23 hm5C_associated_SNPs_46338 0 0 1 0 3 DGKA chr12:56331327 5'GT 56331327 Upstream 42bp
chr12 56331286 56331286 1 + T C UCEC 56331284 + 56331264 56331304 41 AGCCTGGCACTGTTTCAATCCTTTGAGACTGGTCACTGCTT AGCCTGGCACTGTTTCAATCCTCTGAGACTGGTCACTGCTT < 41bp 1 0.37142093360437 1 0.332315623760223 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56331284 chr12:56331286 nonsynonymous SNV 0.744 3 23 hm5C_associated_SNPs_46338 0 0 1 0 3 DGKA chr12:56331341 5'GT 56331341 Upstream 56bp
chr15 64448304 64448304 1 - C T UCEC 64448294 - 64448274 64448314 41 ACAGACAGCCGGGATAAACCCCTGAAGGATGTGATCATCGC ACAGACAGCCAGGATAAACCCCTGAAGGATGTGATCATCGC < 41bp 1 0.614856342841668 1 0.222313791513443 experiment 0.770287314316663 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PPIB ENSG00000166794 CDS Human protein_coding chr15:64448294 chr15:64448304 nonsynonymous SNV 0.991 2 11 hm5C_associated_SNPs_46339 1 0 1 0 1 PPIB chr15:64448344 3'AG 64448344 Downstream 41bp
chr2 219526239 219526239 1 + G A UCEC 219526252 + 219526232 219526272 41 ACTGACCGAAAGGTTTTCTTCAACATCCTGGAGGAAGGTGT ACTGACCAAAAGGTTTTCTTCAACATCCTGGAGGAAGGTGT < 41bp 1 0.760809809772778 1 0.253392457962036 experiment 0.478380380454444 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCS1L ENSG00000074582 CDS Human protein_coding chr2:219526252 chr2:219526239 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_46340 1 0 1 0 1 BCS1L chr2:219526268 5'GT 219526268 Upstream 30bp
chr16 83251040 83251040 1 + G T UCEC 83251057 + 83251037 83251077 41 AATGAGAACACAGGGAGCGTCTCCGTGACACGGACCTTGGA AATTAGAACACAGGGAGCGTCTCCGTGACACGGACCTTGGA < 41bp 1 0.427553359570579 1 0.950599074363708 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:83251057 chr16:83251040 stopgain 1.000 0 4 hm5C_associated_SNPs_46341 0 0 0 0 2 CDH13 chr16:83250950 3'AG 83250950 Downstream 91bp
chr16 83251040 83251040 1 + G T UCEC 83251057 + 83251037 83251077 41 AATGAGAACACAGGGAGCGTCTCCGTGACACGGACCTTGGA AATTAGAACACAGGGAGCGTCTCCGTGACACGGACCTTGGA < 41bp 1 0.427553359570579 1 0.950599074363708 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:83251057 chr16:83251040 stopgain 1.000 0 4 hm5C_associated_SNPs_46341 0 0 0 0 2 CDH13 chr16:83251102 5'GT 83251102 Upstream 63bp
chr19 7598493 7598493 1 + C T UCEC 7598504 + 7598484 7598524 41 GGCAAGTTCCGCCGCGGGAGCGGCTCGGCCTGCAGCCTTCT GGCAAGTTCTGCCGCGGGAGCGGCTCGGCCTGCAGCCTTCT < 41bp 1 0.448909999466683 1 0.0503866970539093 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCOLN1 ENSG00000090674;ENSG00000268614 CDS Human protein_coding chr19:7598504 chr19:7598493 nonsynonymous SNV 0.986 5 10 hm5C_associated_SNPs_46342 0 0 0 0 2 MCOLN1 chr19:7598409 3'AG 7598409 Downstream 85bp
chr19 7598493 7598493 1 + C T UCEC 7598504 + 7598484 7598524 41 GGCAAGTTCCGCCGCGGGAGCGGCTCGGCCTGCAGCCTTCT GGCAAGTTCTGCCGCGGGAGCGGCTCGGCCTGCAGCCTTCT < 41bp 1 0.448909999466683 1 0.0503866970539093 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCOLN1 ENSG00000090674;ENSG00000268614 CDS Human other chr19:7598504 chr19:7598493 nonsynonymous SNV 0.986 5 10 hm5C_associated_SNPs_46342 0 0 0 0 2 MCOLN1 chr19:7598539 5'GT 7598539 Upstream 47bp
chr17 72239541 72239541 1 + C A UCEC 72239546 + 72239526 72239566 41 CTCCTGCTCTTTATCCTGGACCTGGTCATCTGCCTCATTGC CTCCTGCTCTTTATCATGGACCTGGTCATCTGCCTCATTGC < 41bp 1 0.153656114889925 1 0.07244473695755 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72239546 chr17:72239541 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_46343 0 0 1 0 2 TTYH2 chr17:72239513 3'AG 72239513 Downstream 29bp
chr17 72239541 72239541 1 + C A UCEC 72239546 + 72239526 72239566 41 CTCCTGCTCTTTATCCTGGACCTGGTCATCTGCCTCATTGC CTCCTGCTCTTTATCATGGACCTGGTCATCTGCCTCATTGC < 41bp 1 0.153656114889925 1 0.07244473695755 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72239546 chr17:72239541 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_46343 0 0 1 0 2 TTYH2 chr17:72239608 5'GT 72239608 Upstream 68bp
chr20 60768508 60768508 1 + T C UCEC 60768502 + 60768482 60768522 41 ACCTGCAAGGTGTTTCTCAGCAAGATTGAGGACCGTGTTTC ACCTGCAAGGTGTTTCTCAGCAAGATCGAGGACCGTGTTTC < 41bp 1 0.778597212751448 1 0.350099444389343 experiment 0.442805574497104 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTG2 ENSG00000101181 CDS Human protein_coding chr20:60768502 chr20:60768508 nonsynonymous SNV 0.000 0 27 hm5C_associated_SNPs_46344 0 0 1 0 1 MTG2 chr20:60768472 3'AG 60768472 Downstream 37bp
chr1 39898741 39898741 1 + C T UCEC 39898725 + 39898705 39898745 41 GTTTACTTTTCAAAGGCTTTCTCCATTGACATTATTCGACA GTTTACTTTTCAAAGGCTTTCTCCATTGACATTATTTGACA < 41bp 1 0.205380127011611 1 0.94687557220459 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39898725 chr1:39898741 stopgain 1.000 1 37 hm5C_associated_SNPs_46345 0 0 1 0 2 MACF1 chr1:39898720 3'AG 39898720 Downstream 22bp
chr1 39898741 39898741 1 + C T UCEC 39898725 + 39898705 39898745 41 GTTTACTTTTCAAAGGCTTTCTCCATTGACATTATTCGACA GTTTACTTTTCAAAGGCTTTCTCCATTGACATTATTTGACA < 41bp 1 0.205380127011611 1 0.94687557220459 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39898725 chr1:39898741 stopgain 1.000 1 37 hm5C_associated_SNPs_46345 0 0 1 0 2 MACF1 chr1:39898827 5'GT 39898827 Upstream 87bp
chr1 63282296 63282296 1 + G T UCEC 63282293 + 63282273 63282313 41 CGGGATGTACAATAGAGGATCACGTAATTGCAGGAAATGTA CGGGATGTACAATAGAGGATCACTTAATTGCAGGAAATGTA < 41bp 1 0.141659403642883 1 0.102773934602737 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATG4C ENSG00000125703 CDS Human protein_coding chr1:63282293 chr1:63282296 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_46346 0 0 1 0 1 ATG4C chr1:63282246 3'AG 63282246 Downstream 51bp
chr1 114440547 114440547 1 - C T UCEC 114440557 - 114440537 114440577 41 CCTGTATTGTAGTGGTGGTGCAGACTTTCCGAGACCTGGTT CCTGTATTGTAGTGGTGGTGCAGACTTTCCAAGACCTGGTT < 41bp 1 0.462629588445433 1 0.198393851518631 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4B1 ENSG00000134262 CDS Human protein_coding chr1:114440557 chr1:114440547 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_46350 0 0 0 0 2 AP4B1 chr1:114440462 5'GT 114440462 Upstream 86bp
chr1 114440547 114440547 1 - C T UCEC 114440557 - 114440537 114440577 41 CCTGTATTGTAGTGGTGGTGCAGACTTTCCGAGACCTGGTT CCTGTATTGTAGTGGTGGTGCAGACTTTCCAAGACCTGGTT < 41bp 1 0.462629588445433 1 0.198393851518631 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4B1 ENSG00000134262 CDS Human protein_coding chr1:114440557 chr1:114440547 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_46350 0 0 0 0 2 AP4B1 chr1:114440565 3'AG 114440565 Downstream 19bp
chr3 180693112 180693112 1 + G T UCEC 180693102 + 180693082 180693122 41 TTTTTCTCATCTTTAACAGTCACAGTTGCAGATTATATTTC TTTTTCTCATCTTTAACAGTCACAGTTGCATATTATATTTC < 41bp 1 0.217435044962354 1 0.116591483354568 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FXR1 ENSG00000114416 CDS Human protein_coding chr3:180693102 chr3:180693112 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_46352 0 0 1 0 2 FXR1 chr3:180693101 3'AG 180693101 Downstream 12bp
chr3 180693112 180693112 1 + G T UCEC 180693102 + 180693082 180693122 41 TTTTTCTCATCTTTAACAGTCACAGTTGCAGATTATATTTC TTTTTCTCATCTTTAACAGTCACAGTTGCATATTATATTTC < 41bp 1 0.217435044962354 1 0.116591483354568 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FXR1 ENSG00000114416 CDS Human protein_coding chr3:180693102 chr3:180693112 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_46352 0 0 1 0 2 FXR1 chr3:180693192 5'GT 180693192 Upstream 81bp
chr20 18455766 18455766 1 + G T UCEC 18455764 + 18455744 18455784 41 TAAAAGTAATTTGCCATTAACAGAAATCAACAAAATTCTGA TAAAAGTAATTTGCCATTAACATAAATCAACAAAATTCTGA < 41bp 1 0.265355955786124 1 0.0934963226318359 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLR3F ENSG00000132664 CDS Human protein_coding chr20:18455764 chr20:18455766 stopgain 1.000 1 23 hm5C_associated_SNPs_46353 0 0 1 3 2 POLR3F chr20:18455719 3'AG 18455719 Downstream 48bp
chr20 18455766 18455766 1 + G T UCEC 18455764 + 18455744 18455784 41 TAAAAGTAATTTGCCATTAACAGAAATCAACAAAATTCTGA TAAAAGTAATTTGCCATTAACATAAATCAACAAAATTCTGA < 41bp 1 0.265355955786124 1 0.0934963226318359 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLR3F ENSG00000132664 CDS Human protein_coding chr20:18455764 chr20:18455766 stopgain 1.000 1 23 hm5C_associated_SNPs_46353 0 0 1 3 2 POLR3F chr20:18455831 5'GT 18455831 Upstream 66bp
chr12 54675961 54675961 1 + G T UCEC 54675973 + 54675953 54675993 41 ACCTAAGAGATTATTTTGAACAGTATGGAAAAATTGAAGTG ACCTAAGATATTATTTTGAACAGTATGGAAAAATTGAAGTG < 41bp 1 0.531200995662408 1 0.29952472448349 experiment 0.937598008675184 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675973 chr12:54675961 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_46354 0 0 0 5 1 HNRNPA1 chr12:54675874 3'AG 54675874 Downstream 88bp
chr4 6596390 6596390 1 + C T UCEC 6596403 + 6596383 6596423 41 CTACTTCCGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG CTACTTCTGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG < 41bp 1 0.187193612593771 1 0.0348293483257294 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6596403 chr4:6596390 nonsynonymous SNV 0.314 2 8 hm5C_associated_SNPs_46355 0 0 0 0 2 MAN2B2 chr4:6596348 3'AG 6596348 Downstream 43bp
chr4 6596390 6596390 1 + C T UCEC 6596403 + 6596383 6596423 41 CTACTTCCGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG CTACTTCTGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG < 41bp 1 0.187193612593771 1 0.0348293483257294 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6596403 chr4:6596390 nonsynonymous SNV 0.314 2 8 hm5C_associated_SNPs_46355 0 0 0 0 2 MAN2B2 chr4:6596459 5'GT 6596459 Upstream 70bp
chr5 14359513 14359513 1 + A G UCEC 14359530 + 14359510 14359550 41 TCAACCACATTGAGACGGTGCTGCAGCAGCTGGACGAGGCG TCAGCCACATTGAGACGGTGCTGCAGCAGCTGGACGAGGCG < 41bp 1 0.362794715459615 1 0.524350523948669 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359530 chr5:14359513 nonsynonymous SNV 0.943 0 4 hm5C_associated_SNPs_46356 0 0 1 0 1 TRIO chr5:14359466 3'AG 14359466 Downstream 48bp
chr20 62366069 62366069 1 + A T UCEC 62366054 + 62366034 62366074 41 TGCCCTCTGTCCGTCTCTTGCAGTGGTGGGGTCAGATGCTG TGCCCTCTGTCCGTCTCTTGCAGTGGTGGGGTCAGTTGCTG < 41bp 1 0.471229552319575 1 0.436184406280518 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZGPAT ENSG00000197114;ENSG00000273154 CDS Human protein_coding chr20:62366054 chr20:62366069 nonsynonymous SNV 0.000 0 36 hm5C_associated_SNPs_46357 0 0 1 0 2 ZGPAT chr20:62365997 3'AG 62365997 Downstream 73bp
chr20 62366069 62366069 1 + A T UCEC 62366054 + 62366034 62366074 41 TGCCCTCTGTCCGTCTCTTGCAGTGGTGGGGTCAGATGCTG TGCCCTCTGTCCGTCTCTTGCAGTGGTGGGGTCAGTTGCTG < 41bp 1 0.471229552319575 1 0.436184406280518 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZGPAT ENSG00000197114;ENSG00000273154 CDS Human other chr20:62366054 chr20:62366069 nonsynonymous SNV 0.000 0 36 hm5C_associated_SNPs_46357 0 0 1 0 2 ZGPAT chr20:62366057 3'AG 62366057 Downstream 13bp
chr2 63834052 63834052 1 + G T UCEC 63834066 + 63834046 63834086 41 TGAGAAGATGGATCTTACTGCAAAGGAACTGACAGAAGAAA TGAGAATATGGATCTTACTGCAAAGGAACTGACAGAAGAAA < 41bp 1 0.288603837598851 1 0.122125118970871 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MDH1 ENSG00000014641 CDS Human protein_coding chr2:63834066 chr2:63834052 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_46358 0 0 1 0 1 MDH1 chr2:63833996 3'AG 63833996 Downstream 57bp
chrX 153035876 153035876 1 + G A UCEC 153035874 + 153035854 153035894 41 CTCCTTTTATGACTGCAGTGCCGTCCAGGCCTTGGAGGCGG CTCCTTTTATGACTGCAGTGCCATCCAGGCCTTGGAGGCGG < 41bp 1 0.0185762653911291 1 0.0539510846138 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153035874 chrX:153035876 nonsynonymous SNV 0.467 0 23 hm5C_associated_SNPs_46359 0 0 0 0 2 PLXNB3 chrX:153035793 3'AG 153035793 Downstream 84bp
chrX 153035876 153035876 1 + G A UCEC 153035874 + 153035854 153035894 41 CTCCTTTTATGACTGCAGTGCCGTCCAGGCCTTGGAGGCGG CTCCTTTTATGACTGCAGTGCCATCCAGGCCTTGGAGGCGG < 41bp 1 0.0185762653911291 1 0.0539510846138 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153035874 chrX:153035876 nonsynonymous SNV 0.467 0 23 hm5C_associated_SNPs_46359 0 0 0 0 2 PLXNB3 chrX:153035901 5'GT 153035901 Upstream 26bp
chr19 50027855 50027855 1 + G A UCEC 50027862 + 50027842 50027882 41 ACCCTCCGGAGCTGCAACTTCGGTTCCTGCGGAATGGGCTG ACCCTCCGGAGCTACAACTTCGGTTCCTGCGGAATGGGCTG < 41bp 1 0.433478842450071 1 0.428003072738647 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCGRT ENSG00000104870 CDS Human protein_coding chr19:50027862 chr19:50027855 synonymous SNV . 0 14 hm5C_associated_SNPs_46360 0 0 1 1 1 FCGRT chr19:50027764 3'AG 50027764 Downstream 92bp
chr11 47296642 47296642 1 + G A UCEC 47296654 + 47296634 47296674 41 ACTCTCAAGCGCCTGGTGGACTGCTGTAGTGAGCGCCTTCT ACTCTCAAACGCCTGGTGGACTGCTGTAGTGAGCGCCTTCT < 41bp 1 0.468642303015696 1 0.113828539848328 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MADD ENSG00000110514 CDS Human protein_coding chr11:47296654 chr11:47296642 synonymous SNV . 0 9 hm5C_associated_SNPs_46361 0 0 1 0 1 MADD chr11:47296710 5'GT 47296710 Upstream 69bp
chrX 41089043 41089043 1 + C T UCEC 41089025 + 41089005 41089045 41 AAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAAAGCCA AAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAAAGTCA < 41bp 1 0.185266154177441 1 0.782468795776367 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089025 chrX:41089043 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_46362 0 0 0 0 1 USP9X chrX:41089080 5'GT 41089080 Upstream 38bp
chrX 41089043 41089043 1 + C T UCEC 41089044 + 41089024 41089064 41 CCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAGA CCAGAGGAGGTAAAAAAAGTCACCAGTGTGCAGCAGATAGA < 41bp 1 0.591969525164739 1 0.279480338096619 experiment 0.816060949670522 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089044 chrX:41089043 nonsynonymous SNV 1.000 0 20 hm5C_associated_SNPs_46363 0 0 0 0 1 USP9X chrX:41089080 5'GT 41089080 Upstream 38bp
chrX 41089043 41089043 1 + C T UCEC 41089046 + 41089026 41089066 41 AGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAGAAA AGAGGAGGTAAAAAAAGTCACCAGTGTGCAGCAGATAGAAA < 41bp 1 0.0841122102214348 1 0.0800729990005493 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089046 chrX:41089043 nonsynonymous SNV 1.000 0 18 hm5C_associated_SNPs_46364 0 0 0 0 1 USP9X chrX:41089080 5'GT 41089080 Upstream 38bp
chrX 41089043 41089043 1 + C T UCEC 41089047 + 41089027 41089067 41 GAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAGAAAT GAGGAGGTAAAAAAAGTCACCAGTGTGCAGCAGATAGAAAT < 41bp 1 0.132253623353821 1 0.115479081869125 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089047 chrX:41089043 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_46365 0 0 0 0 1 USP9X chrX:41089080 5'GT 41089080 Upstream 38bp
chr12 122623409 122623409 1 + G A UCEC 122623396 + 122623376 122623416 41 TGCTCCCTGCCACGGGAGTCCCCGTTACCCGGCGCCAGTTT TGCTCCCTGCCACGGGAGTCCCCGTTACCCGGCACCAGTTT < 41bp 1 0.169395949547059 1 0.108262240886688 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MLXIP ENSG00000175727 CDS Human protein_coding chr12:122623396 chr12:122623409 nonsynonymous SNV 0.987 0 34 hm5C_associated_SNPs_46366 0 0 0 0 2 MLXIP chr12:122623362 3'AG 122623362 Downstream 48bp
chr12 122623409 122623409 1 + G A UCEC 122623396 + 122623376 122623416 41 TGCTCCCTGCCACGGGAGTCCCCGTTACCCGGCGCCAGTTT TGCTCCCTGCCACGGGAGTCCCCGTTACCCGGCACCAGTTT < 41bp 1 0.169395949547059 1 0.108262240886688 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MLXIP ENSG00000175727 CDS Human protein_coding chr12:122623396 chr12:122623409 nonsynonymous SNV 0.987 0 34 hm5C_associated_SNPs_46366 0 0 0 0 2 MLXIP chr12:122623485 5'GT 122623485 Upstream 77bp
chr2 220097300 220097300 1 + T C UCEC 220097293 + 220097273 220097313 41 GACACTGGATCGGGAGAGGGCTACATTTGAGAAGTTGAGCC GACACTGGATCGGGAGAGGGCTACATTCGAGAAGTTGAGCC < 41bp 1 0.784892599942253 1 0.822545349597931 experiment 0.430214800115494 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220097293 chr2:220097300 synonymous SNV . 0 28 hm5C_associated_SNPs_46367 0 0 1 0 1 ANKZF1 chr2:220097212 3'AG 220097212 Downstream 89bp
chr6 33179715 33179715 1 + G A UCEC 33179728 + 33179708 33179748 41 TTGCCCAGCCTGGAGGGCGTCAGTGAAAAGCAGTACACCAT TTGCCCAACCTGGAGGGCGTCAGTGAAAAGCAGTACACCAT < 41bp 1 0.536302547305005 1 0.200587064027786 experiment 0.927394905389989 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RING1 ENSG00000204227 CDS Human protein_coding chr6:33179728 chr6:33179715 nonsynonymous SNV 0.998 2 8 hm5C_associated_SNPs_46368 0 0 1 0 1 RING1 chr6:33179779 5'GT 33179779 Upstream 65bp
chr5 134099691 134099691 1 + C T UCEC 134099676 + 134099656 134099696 41 CCTCAGACAAAAGAAGTAAACGTGGAGATGACAGACGGTCT CCTCAGACAAAAGAAGTAAACGTGGAGATGACAGATGGTCT < 41bp 1 0.691057080189127 1 0.618604600429535 experiment 0.617885839621746 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DDX46 ENSG00000145833 CDS Human protein_coding chr5:134099676 chr5:134099691 nonsynonymous SNV 0.990 4 36 hm5C_associated_SNPs_46369 0 0 1 0 2 DDX46 chr5:134099594 3'AG 134099594 Downstream 98bp
chr5 134099691 134099691 1 + C T UCEC 134099676 + 134099656 134099696 41 CCTCAGACAAAAGAAGTAAACGTGGAGATGACAGACGGTCT CCTCAGACAAAAGAAGTAAACGTGGAGATGACAGATGGTCT < 41bp 1 0.691057080189127 1 0.618604600429535 experiment 0.617885839621746 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DDX46 ENSG00000145833 CDS Human protein_coding chr5:134099676 chr5:134099691 nonsynonymous SNV 0.990 4 36 hm5C_associated_SNPs_46369 0 0 1 0 2 DDX46 chr5:134099782 5'GT 134099782 Upstream 92bp
chr5 134099691 134099691 1 + C T UCEC 134099687 + 134099667 134099707 41 AGAAGTAAACGTGGAGATGACAGACGGTCTAGAAGTAGAGA AGAAGTAAACGTGGAGATGACAGATGGTCTAGAAGTAGAGA < 41bp 1 0.610664743080431 1 0.424669414758682 experiment 0.778670513839138 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134099687 chr5:134099691 nonsynonymous SNV 0.990 4 25 hm5C_associated_SNPs_46370 0 0 1 0 2 DDX46 chr5:134099594 3'AG 134099594 Downstream 98bp
chr5 134099691 134099691 1 + C T UCEC 134099687 + 134099667 134099707 41 AGAAGTAAACGTGGAGATGACAGACGGTCTAGAAGTAGAGA AGAAGTAAACGTGGAGATGACAGATGGTCTAGAAGTAGAGA < 41bp 1 0.610664743080431 1 0.424669414758682 experiment 0.778670513839138 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134099687 chr5:134099691 nonsynonymous SNV 0.990 4 25 hm5C_associated_SNPs_46370 0 0 1 0 2 DDX46 chr5:134099782 5'GT 134099782 Upstream 92bp
chr18 56063419 56063419 1 + C A UCEC 56063414 + 56063394 56063434 41 TGCAGCTTTAATCGCCTTGACTTACCTCCATATGAAACCTT TGCAGCTTTAATCGCCTTGACTTACATCCATATGAAACCTT < 41bp 1 0.0478821858691343 1 0.0756919384002686 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NEDD4L ENSG00000049759 CDS Human protein_coding chr18:56063414 chr18:56063419 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_46371 0 0 1 0 1 NEDD4L chr18:56063399 3'AG 56063399 Downstream 21bp
chr19 50385608 50385608 1 + C G UCEC 50385593 + 50385573 50385613 41 GCAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCGC GCAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCGCCCGC < 41bp 1 0.295655035518723 1 0.159971326589584 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385593 chr19:50385608 nonsynonymous SNV 0.228 0 36 hm5C_associated_SNPs_46373 0 0 1 0 1 TBC1D17 chr19:50385657 5'GT 50385657 Upstream 50bp
chr19 50385608 50385608 1 + C G UCEC 50385594 + 50385574 50385614 41 CAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCGCC CAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCGCCCGCC < 41bp 1 0.502239298923618 1 0.348650127649307 experiment 0.995521402152765 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385594 chr19:50385608 nonsynonymous SNV 0.228 0 35 hm5C_associated_SNPs_46374 0 0 1 0 1 TBC1D17 chr19:50385657 5'GT 50385657 Upstream 50bp
chr12 7362288 7362288 1 + C T UCEC 7362307 + 7362287 7362327 41 GCTGTGGAATAAGCTAGGCGCCACCCTGGCCAATGGAAACC GTTGTGGAATAAGCTAGGCGCCACCCTGGCCAATGGAAACC < 41bp 1 0.0830313491862423 1 0.0447022616863251 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PEX5 ENSG00000139197 CDS Human protein_coding chr12:7362307 chr12:7362288 synonymous SNV . 0 2 hm5C_associated_SNPs_46375 0 0 1 0 1 PEX5 chr12:7362279 3'AG 7362279 Downstream 10bp
chr5 65105419 65105419 1 + G A UCEC 65105431 + 65105411 65105451 41 GAAAATTGGGTGTGGGACGTCGATTCCCTCCGAAGATTGTC GAAAATTGAGTGTGGGACGTCGATTCCCTCCGAAGATTGTC < 41bp 1 0.0953848309287672 1 0.311452031135559 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLN ENSG00000123213 CDS Human protein_coding chr5:65105431 chr5:65105419 stopgain 1.000 1 9 hm5C_associated_SNPs_46379 0 0 1 0 1 NLN chr5:65105342 3'AG 65105342 Downstream 78bp
chr9 21818058 21818058 1 + G A UCEC 21818055 + 21818035 21818075 41 CATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTA CATGGAAGGCAGCACACCATCATACCTTCAAAGGTCAACTA < 41bp 1 0.26048352441695 1 0.200212955474854 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTAP ENSG00000099810;ENSG00000264545 CDS Human other chr9:21818055 chr9:21818058 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_46380 0 0 1 0 1 MTAP chr9:21818034 3'AG 21818034 Downstream 25bp
chr19 18266997 18266997 1 + G T UCEC 18267008 + 18266988 18267028 41 CCCGTGATGGGGCCCCTGAGCCAGGTGAGCAGCAAGCAGGG CCCGTGATGTGGCCCCTGAGCCAGGTGAGCAGCAAGCAGGG < 41bp 1 0.63952553988661 1 0.647323966026306 experiment 0.720948920226779 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIK3R2 ENSG00000105647;ENSG00000268173 CDS Human other chr19:18267008 chr19:18266997 nonsynonymous SNV 0.196 1 10 hm5C_associated_SNPs_46381 0 0 0 0 1 PIK3R2 chr19:18267011 5'GT 18267011 Upstream 15bp
chr7 43990226 43990226 1 + C T UCEC 43990229 + 43990209 43990249 41 ATCTGCTCGCTGCTCTGCGACCCCAACCCCGATGACCCCCT ATCTGCTCGCTGCTCTGTGACCCCAACCCCGATGACCCCCT < 41bp 1 0.646438743882431 1 0.0683695077896118 experiment 0.707122512235139 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE2D4 ENSG00000078967 CDS Human protein_coding chr7:43990229 chr7:43990226 synonymous SNV . 0 18 hm5C_associated_SNPs_46383 0 0 1 0 2 UBE2D4 chr7:43990198 3'AG 43990198 Downstream 29bp
chr7 43990226 43990226 1 + C T UCEC 43990229 + 43990209 43990249 41 ATCTGCTCGCTGCTCTGCGACCCCAACCCCGATGACCCCCT ATCTGCTCGCTGCTCTGTGACCCCAACCCCGATGACCCCCT < 41bp 1 0.646438743882431 1 0.0683695077896118 experiment 0.707122512235139 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE2D4 ENSG00000078967 CDS Human protein_coding chr7:43990229 chr7:43990226 synonymous SNV . 0 18 hm5C_associated_SNPs_46383 0 0 1 0 2 UBE2D4 chr7:43990291 5'GT 43990291 Upstream 66bp
chr15 42052714 42052714 1 + T C UCEC 42052715 + 42052695 42052735 41 TCCAAGGTTTCCAAAAGTCTCATTCTTACTCGAGTAAGTGT TCCAAGGTTTCCAAAAGTCCCATTCTTACTCGAGTAAGTGT < 41bp 1 0.0160688485907783 1 0.0652045905590057 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGA ENSG00000174197 CDS Human protein_coding chr15:42052715 chr15:42052714 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_46388 0 0 1 0 1 MGA chr15:42052727 5'GT 42052727 Upstream 14bp
chr1 186047328 186047328 1 + C A UCEC 186047314 + 186047294 186047334 41 ATGTGTGGCTGTGAATGAGGCTGGAGAAGATTCCCTTCAAT ATGTGTGGCTGTGAATGAGGCTGGAGAAGATTCCATTCAAT < 41bp 1 0.334640860807016 1 0.7695072889328 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HMCN1 ENSG00000143341 CDS Human protein_coding chr1:186047314 chr1:186047328 nonsynonymous SNV 0.995 3 35 hm5C_associated_SNPs_46389 0 0 0 0 2 HMCN1 chr1:186047239 3'AG 186047239 Downstream 90bp
chr1 186047328 186047328 1 + C A UCEC 186047314 + 186047294 186047334 41 ATGTGTGGCTGTGAATGAGGCTGGAGAAGATTCCCTTCAAT ATGTGTGGCTGTGAATGAGGCTGGAGAAGATTCCATTCAAT < 41bp 1 0.334640860807016 1 0.7695072889328 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HMCN1 ENSG00000143341 CDS Human protein_coding chr1:186047314 chr1:186047328 nonsynonymous SNV 0.995 3 35 hm5C_associated_SNPs_46389 0 0 0 0 2 HMCN1 chr1:186047352 5'GT 186047352 Upstream 25bp
chr4 39747374 39747374 1 + G T UCEC 39747383 + 39747363 39747403 41 TTTTTTTAGGAGGAAGATACCAACTAGAGATAAAAATACCA TTTTTTTAGGATGAAGATACCAACTAGAGATAAAAATACCA < 41bp 1 0.278775179882975 1 0.198065668344498 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE2K ENSG00000078140 CDS Human protein_coding chr4:39747383 chr4:39747374 stopgain 0.997 1 12 hm5C_associated_SNPs_46390 0 0 1 0 2 UBE2K chr4:39747372 3'AG 39747372 Downstream 3bp
chr4 39747374 39747374 1 + G T UCEC 39747383 + 39747363 39747403 41 TTTTTTTAGGAGGAAGATACCAACTAGAGATAAAAATACCA TTTTTTTAGGATGAAGATACCAACTAGAGATAAAAATACCA < 41bp 1 0.278775179882975 1 0.198065668344498 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE2K ENSG00000078140 CDS Human protein_coding chr4:39747383 chr4:39747374 stopgain 0.997 1 12 hm5C_associated_SNPs_46390 0 0 1 0 2 UBE2K chr4:39747430 5'GT 39747430 Upstream 57bp
chr1 164790817 164790817 1 + G A UCEC 164790815 + 164790795 164790835 41 ATCAGCCAGACAGGAGGATACAGTGATGGACTCGCAGCCAG ATCAGCCAGACAGGAGGATACAATGATGGACTCGCAGCCAG < 41bp 1 0.570744978522593 1 0.231753200292587 experiment 0.858510042954814 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164790815 chr1:164790817 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_46392 0 0 1 0 1 PBX1 chr1:164790774 3'AG 164790774 Downstream 44bp
chr7 33014905 33014905 1 + C A UCEC 33014888 + 33014868 33014908 41 GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCG GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCATCG < 41bp 1 0.508489768587787 1 0.68300187587738 experiment 0.983020462824426 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014888 chr7:33014905 nonsynonymous SNV 0.999 2 38 hm5C_associated_SNPs_46394 0 0 0 0 1 FKBP9 chr7:33014983 5'GT 33014983 Upstream 79bp
chr7 33014905 33014905 1 + C A UCEC 33014892 + 33014872 33014912 41 AGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCGGACC AGATTCACACCTATTTCAAGCCCCCGAGTTGCCATCGGACC < 41bp 1 0.0685234119448674 1 0.0421661138534546 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014892 chr7:33014905 nonsynonymous SNV 0.999 2 34 hm5C_associated_SNPs_46395 0 0 0 0 1 FKBP9 chr7:33014983 5'GT 33014983 Upstream 79bp
chr13 115064359 115064359 1 + A C UCEC 115064352 + 115064332 115064372 41 AAAGGGAGAGGAACCAACCACAGAGAAACCAAAAGAAAGAG AAAGGGAGAGGAACCAACCACAGAGAACCCAAAAGAAAGAG < 41bp 1 0.584163416613314 1 0.779428362846375 experiment 0.831673166773373 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UPF3A ENSG00000169062 CDS Human protein_coding chr13:115064352 chr13:115064359 nonsynonymous SNV 0.201 1 28 hm5C_associated_SNPs_46396 0 0 0 0 1 UPF3A chr13:115064315 3'AG 115064315 Downstream 45bp
chr7 102107924 102107924 1 + C T UCEC 102107918 + 102107898 102107938 41 AGTCCCTCAGCGAGTTCACCCAGTGGCGGGTATGTCCCTGT AGTCCCTCAGCGAGTTCACCCAGTGGTGGGTATGTCCCTGT < 41bp 1 0.499269045183811 1 0.250370860099792 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102107918 chr7:102107924 nonsynonymous SNV 0.983 4 27 hm5C_associated_SNPs_46397 0 0 0 0 1 LRWD1 chr7:102107926 5'GT 102107926 Upstream 3bp
chr15 40477814 40477814 1 + T C UCEC 40477830 + 40477810 40477850 41 CATATGTGGAAGAGACTGCACGACAGCCAGTTATGTGAGTG CATACGTGGAAGAGACTGCACGACAGCCAGTTATGTGAGTG < 41bp 1 0.738157932227761 1 0.234449476003647 experiment 0.523684135544478 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BUB1B ENSG00000156970 CDS Human protein_coding chr15:40477830 chr15:40477814 synonymous SNV . 0 5 hm5C_associated_SNPs_46398 0 0 1 0 2 BUB1B chr15:40477752 3'AG 40477752 Downstream 63bp
chr15 40477814 40477814 1 + T C UCEC 40477830 + 40477810 40477850 41 CATATGTGGAAGAGACTGCACGACAGCCAGTTATGTGAGTG CATACGTGGAAGAGACTGCACGACAGCCAGTTATGTGAGTG < 41bp 1 0.738157932227761 1 0.234449476003647 experiment 0.523684135544478 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BUB1B ENSG00000156970 CDS Human protein_coding chr15:40477830 chr15:40477814 synonymous SNV . 0 5 hm5C_associated_SNPs_46398 0 0 1 0 2 BUB1B chr15:40477843 5'GT 40477843 Upstream 30bp
chr2 46609701 46609701 1 + C A UCEC 46609709 + 46609689 46609729 41 GCCACCCAGTACCAGGACTACAGCCTGTCGTCAGCCCACAA GCCACCCAGTACAAGGACTACAGCCTGTCGTCAGCCCACAA < 41bp 1 0.345723810705657 1 0.105517625808716 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46609709 chr2:46609701 nonsynonymous SNV 0.920 0 13 hm5C_associated_SNPs_46401 0 0 1 0 1 EPAS1 chr2:46609737 5'GT 46609737 Upstream 37bp
chr7 132990726 132990726 1 + C A UCEC 132990708 + 132990688 132990728 41 CTTCGACTAGAGCTTCACAGCAAGAAGATGAACCTTCACTT CTTCGACTAGAGCTTCACAGCAAGAAGATGAACCTTCAATT < 41bp 1 0.727336815247781 1 0.650881111621857 experiment 0.545326369504437 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:132990708 chr7:132990726 nonsynonymous SNV 0.751 2 39 hm5C_associated_SNPs_46402 0 0 1 0 2 EXOC4 chr7:132990631 3'AG 132990631 Downstream 96bp
chr7 132990726 132990726 1 + C A UCEC 132990708 + 132990688 132990728 41 CTTCGACTAGAGCTTCACAGCAAGAAGATGAACCTTCACTT CTTCGACTAGAGCTTCACAGCAAGAAGATGAACCTTCAATT < 41bp 1 0.727336815247781 1 0.650881111621857 experiment 0.545326369504437 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:132990708 chr7:132990726 nonsynonymous SNV 0.751 2 39 hm5C_associated_SNPs_46402 0 0 1 0 2 EXOC4 chr7:132990815 5'GT 132990815 Upstream 90bp
chr19 14561740 14561740 1 + G T UCEC 14561750 + 14561730 14561770 41 CCAACCAGAAGCTGGGGCTGCTGCGGGAGGCTCTGGAGCGG CCAACCAGAATCTGGGGCTGCTGCGGGAGGCTCTGGAGCGG < 41bp 1 0.611134237424334 1 0.4442118704319 experiment 0.777731525151331 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14561750 chr19:14561740 nonsynonymous SNV 0.996 2 11 hm5C_associated_SNPs_46403 0 0 1 0 1 PKN1 chr19:14561708 3'AG 14561708 Downstream 33bp
chr19 14561740 14561740 1 + G T UCEC 14561760 + 14561740 14561780 41 GCTGGGGCTGCTGCGGGAGGCTCTGGAGCGGAGACTTGGGG TCTGGGGCTGCTGCGGGAGGCTCTGGAGCGGAGACTTGGGG < 41bp 1 0.247538612798638 1 0.341204106807709 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14561760 chr19:14561740 nonsynonymous SNV 0.996 2 1 hm5C_associated_SNPs_46404 0 0 1 0 1 PKN1 chr19:14561708 3'AG 14561708 Downstream 33bp
chr20 49458393 49458393 1 + C A UCEC 49458380 + 49458360 49458400 41 GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGCGGAG GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCATGCGGAG < 41bp 1 0.251590184093057 1 0.0608116388320923 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49458380 chr20:49458393 nonsynonymous SNV 0.072 4 34 hm5C_associated_SNPs_46405 0 0 1 0 2 BCAS4 chr20:49458303 3'AG 49458303 Downstream 91bp
chr20 49458393 49458393 1 + C A UCEC 49458380 + 49458360 49458400 41 GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGCGGAG GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCATGCGGAG < 41bp 1 0.251590184093057 1 0.0608116388320923 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49458380 chr20:49458393 nonsynonymous SNV 0.072 4 34 hm5C_associated_SNPs_46405 0 0 1 0 2 BCAS4 chr20:49458437 5'GT 49458437 Upstream 45bp
chr10 103919285 103919285 1 + C T UCEC 103919298 + 103919278 103919318 41 CCAGTGACGAGGAAGAGGAGCAAAAAAAACCCATGAAAAAT CCAGTGATGAGGAAGAGGAGCAAAAAAAACCCATGAAAAAT < 41bp 1 0.576814045768515 1 0.573019921779633 experiment 0.846371908462969 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919298 chr10:103919285 synonymous SNV . 0 8 hm5C_associated_SNPs_46406 0 0 1 0 2 NOLC1 chr10:103919190 3'AG 103919190 Downstream 96bp
chr10 103919285 103919285 1 + C T UCEC 103919298 + 103919278 103919318 41 CCAGTGACGAGGAAGAGGAGCAAAAAAAACCCATGAAAAAT CCAGTGATGAGGAAGAGGAGCAAAAAAAACCCATGAAAAAT < 41bp 1 0.576814045768515 1 0.573019921779633 experiment 0.846371908462969 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919298 chr10:103919285 synonymous SNV . 0 8 hm5C_associated_SNPs_46406 0 0 1 0 2 NOLC1 chr10:103919325 5'GT 103919325 Upstream 41bp
chr13 76414550 76414550 1 + C A UCEC 76414530 + 76414510 76414550 41 CTCTGATAACTGGTTAGCTTCCAGTTCCAACCATCAGTGCC CTCTGATAACTGGTTAGCTTCCAGTTCCAACCATCAGTGCA < 41bp 1 0.200425720936572 1 0.0582790672779083 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76414530 chr13:76414550 synonymous SNV . 0 41 hm5C_associated_SNPs_46407 0 0 1 0 2 LMO7 chr13:76414527 3'AG 76414527 Downstream 24bp
chr13 76414550 76414550 1 + C A UCEC 76414530 + 76414510 76414550 41 CTCTGATAACTGGTTAGCTTCCAGTTCCAACCATCAGTGCC CTCTGATAACTGGTTAGCTTCCAGTTCCAACCATCAGTGCA < 41bp 1 0.200425720936572 1 0.0582790672779083 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76414530 chr13:76414550 synonymous SNV . 0 41 hm5C_associated_SNPs_46407 0 0 1 0 2 LMO7 chr13:76414631 5'GT 76414631 Upstream 82bp
chr2 131128288 131128288 1 + C T UCEC 131128284 + 131128264 131128304 41 TCTGTCTGCCCCAGATGATCCCACCTGACTTCAGTCTCTTT TCTGTCTGCCCCAGATGATCCCACTTGACTTCAGTCTCTTT < 41bp 1 0.0772402025805459 1 0.014413595199585 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPN18 ENSG00000072135 CDS Human protein_coding chr2:131128284 chr2:131128288 nonsynonymous SNV 0.888 3 25 hm5C_associated_SNPs_46408 0 0 1 0 2 PTPN18 chr2:131128278 3'AG 131128278 Downstream 11bp
chr2 131128288 131128288 1 + C T UCEC 131128284 + 131128264 131128304 41 TCTGTCTGCCCCAGATGATCCCACCTGACTTCAGTCTCTTT TCTGTCTGCCCCAGATGATCCCACTTGACTTCAGTCTCTTT < 41bp 1 0.0772402025805459 1 0.014413595199585 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPN18 ENSG00000072135 CDS Human protein_coding chr2:131128284 chr2:131128288 nonsynonymous SNV 0.888 3 25 hm5C_associated_SNPs_46408 0 0 1 0 2 PTPN18 chr2:131128355 5'GT 131128355 Upstream 68bp
chr7 157159212 157159212 1 + C A UCEC 157159209 + 157159189 157159229 41 TTTTTAGCTAAGAAACGGGACATCTATGACAAATATGGCAA TTTTTAGCTAAGAAACGGGACATATATGACAAATATGGCAA < 41bp 1 0.0256180917118543 1 0.0644552409648895 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJB6 ENSG00000105993 CDS Human protein_coding chr7:157159209 chr7:157159212 synonymous SNV . 0 24 hm5C_associated_SNPs_46410 0 0 1 0 2 DNAJB6 chr7:157159196 3'AG 157159196 Downstream 17bp
chr7 157159212 157159212 1 + C A UCEC 157159209 + 157159189 157159229 41 TTTTTAGCTAAGAAACGGGACATCTATGACAAATATGGCAA TTTTTAGCTAAGAAACGGGACATATATGACAAATATGGCAA < 41bp 1 0.0256180917118543 1 0.0644552409648895 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJB6 ENSG00000105993 CDS Human protein_coding chr7:157159209 chr7:157159212 synonymous SNV . 0 24 hm5C_associated_SNPs_46410 0 0 1 0 2 DNAJB6 chr7:157159255 5'GT 157159255 Upstream 44bp
chr2 170804116 170804116 1 + A C UCEC 170804126 + 170804106 170804146 41 TTAGTGTCAAACATGCGACACTTTATAAACTATGTTAGAGT TTAGTGTCAACCATGCGACACTTTATAAACTATGTTAGAGT < 41bp 1 0.0679460933766822 1 0.0408710539340973 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBR3 ENSG00000144357 CDS Human protein_coding chr2:170804126 chr2:170804116 nonsynonymous SNV 0.999 3 11 hm5C_associated_SNPs_46411 0 0 0 1 1 UBR3 chr2:170804052 3'AG 170804052 Downstream 65bp
chrX 47072471 47072471 1 + A G UCEC 47072491 + 47072471 47072511 41 ACAAGGTTGTGCAGGGGCACCGACAGCTTGACTCCTACAAG GCAAGGTTGTGCAGGGGCACCGACAGCTTGACTCCTACAAG < 41bp 1 0.706070508642646 1 0.26274237036705 experiment 0.587858982714707 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBA1 ENSG00000130985 CDS Human protein_coding chrX:47072491 chrX:47072471 nonsynonymous SNV 0.997 2 1 hm5C_associated_SNPs_46412 0 0 1 0 1 UBA1 chrX:47072389 3'AG 47072389 Downstream 83bp
chr20 25205859 25205859 1 + C T UCEC 25205875 + 25205855 25205895 41 GAGACACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT GAGATACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT < 41bp 1 0.172734212046486 1 0.0401925444602966 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25205875 chr20:25205859 nonsynonymous SNV 0.048 0 5 hm5C_associated_SNPs_46413 0 0 1 0 3 ENTPD6 chr20:25205798 3'AG 25205798 Downstream 62bp
chr20 25205859 25205859 1 + C T UCEC 25205875 + 25205855 25205895 41 GAGACACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT GAGATACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT < 41bp 1 0.172734212046486 1 0.0401925444602966 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25205875 chr20:25205859 nonsynonymous SNV 0.048 0 5 hm5C_associated_SNPs_46413 0 0 1 0 3 ENTPD6 chr20:25205841 3'AG 25205841 Downstream 19bp
chr20 25205859 25205859 1 + C T UCEC 25205875 + 25205855 25205895 41 GAGACACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT GAGATACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT < 41bp 1 0.172734212046486 1 0.0401925444602966 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25205875 chr20:25205859 nonsynonymous SNV 0.048 0 5 hm5C_associated_SNPs_46413 0 0 1 0 3 ENTPD6 chr20:25205953 5'GT 25205953 Upstream 95bp
chr14 100367320 100367320 1 + G A UCEC 100367316 + 100367296 100367336 41 TCTGTGACATTGAATACTCTCCACGTCATTGGAATAGGTTT TCTGTGACATTGAATACTCTCCACATCATTGGAATAGGTTT < 41bp 1 0.334756551661481 1 0.402884602546692 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EML1 ENSG00000066629 CDS Human protein_coding chr14:100367316 chr14:100367320 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_46417 0 0 1 0 2 EML1 chr14:100367266 3'AG 100367266 Downstream 55bp
chr14 100367320 100367320 1 + G A UCEC 100367316 + 100367296 100367336 41 TCTGTGACATTGAATACTCTCCACGTCATTGGAATAGGTTT TCTGTGACATTGAATACTCTCCACATCATTGGAATAGGTTT < 41bp 1 0.334756551661481 1 0.402884602546692 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EML1 ENSG00000066629 CDS Human protein_coding chr14:100367316 chr14:100367320 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_46417 0 0 1 0 2 EML1 chr14:100367376 5'GT 100367376 Upstream 57bp
chr1 39851548 39851548 1 + A G UCEC 39851531 + 39851511 39851551 41 GTGCTCATTGGTGAGCAGTACCTCAAGGATGAACTGAAGAA GTGCTCATTGGTGAGCAGTACCTCAAGGATGAACTGAGGAA < 41bp 1 0.0945213073082354 1 0.0775502920150757 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39851531 chr1:39851548 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_46419 0 0 1 0 1 MACF1 chr1:39851601 5'GT 39851601 Upstream 54bp
chr1 39851548 39851548 1 + A G UCEC 39851532 + 39851512 39851552 41 TGCTCATTGGTGAGCAGTACCTCAAGGATGAACTGAAGAAG TGCTCATTGGTGAGCAGTACCTCAAGGATGAACTGAGGAAG < 41bp 1 0.368433866984285 1 0.119789183139801 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39851532 chr1:39851548 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_46420 0 0 1 0 1 MACF1 chr1:39851601 5'GT 39851601 Upstream 54bp
chr6 35047375 35047375 1 + A G UCEC 35047379 + 35047359 35047399 41 CTGCAGGACTACGTCCATTCCTTCTTGTCAAGTGGTTACAG CTGCAGGACTACGTCCGTTCCTTCTTGTCAAGTGGTTACAG < 41bp 1 0.164437265958126 1 0.0207889080047607 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKS1A ENSG00000064999 CDS Human protein_coding chr6:35047379 chr6:35047375 nonsynonymous SNV 0.986 1 17 hm5C_associated_SNPs_46421 0 0 0 0 2 ANKS1A chr6:35047293 3'AG 35047293 Downstream 83bp
chr6 35047375 35047375 1 + A G UCEC 35047379 + 35047359 35047399 41 CTGCAGGACTACGTCCATTCCTTCTTGTCAAGTGGTTACAG CTGCAGGACTACGTCCGTTCCTTCTTGTCAAGTGGTTACAG < 41bp 1 0.164437265958126 1 0.0207889080047607 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKS1A ENSG00000064999 CDS Human protein_coding chr6:35047379 chr6:35047375 nonsynonymous SNV 0.986 1 17 hm5C_associated_SNPs_46421 0 0 0 0 2 ANKS1A chr6:35047445 5'GT 35047445 Upstream 71bp
chr20 37150281 37150281 1 + T C UCEC 37150300 + 37150280 37150320 41 CTGTGTAGGATTTTTTGTAGCAAGAAGACTGGAGAAGAGAT CCGTGTAGGATTTTTTGTAGCAAGAAGACTGGAGAAGAGAT < 41bp 1 0.573096385204077 1 0.554952323436737 experiment 0.853807229591847 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37150300 chr20:37150281 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_46422 0 0 1 0 1 RALGAPB chr20:37150341 5'GT 37150341 Upstream 61bp
chr12 107254061 107254061 1 + A C UCEC 107254054 + 107254034 107254074 41 CTGTTTTTGCAGTGGATAGTCTGCTGAAATACACTGGCTAT CTGTTTTTGCAGTGGATAGTCTGCTGACATACACTGGCTAT < 41bp 1 0.64857512523946 1 0.538294196128845 experiment 0.702849749521079 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107254054 chr12:107254061 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_46424 0 0 1 0 1 RIC8B chr12:107254046 3'AG 107254046 Downstream 16bp
chr3 52238026 52238026 1 + A C UCEC 52238023 + 52238003 52238043 41 TCTTCTTCAAGATAACTTGCCAAAATGTAAGTCTCATTGTT TCTTCTTCAAGATAACTTGCCAACATGTAAGTCTCATTGTT < 41bp 1 0.431540201601947 1 0.0776388049125671 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52238023 chr3:52238026 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_46425 0 0 1 0 1 ALAS1 chr3:52238028 5'GT 52238028 Upstream 3bp
chr1 110170130 110170130 1 + A G UCEC 110170120 + 110170100 110170140 41 GACGTCAATGTGCTGATGGCCCTGATTATCAATGGCCCCAT GACGTCAATGTGCTGATGGCCCTGATTATCGATGGCCCCAT < 41bp 1 0.419182068286886 1 0.034393697977066 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110170120 chr1:110170130 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_46426 0 0 1 0 2 AMPD2 chr1:110170051 3'AG 110170051 Downstream 80bp
chr1 110170130 110170130 1 + A G UCEC 110170120 + 110170100 110170140 41 GACGTCAATGTGCTGATGGCCCTGATTATCAATGGCCCCAT GACGTCAATGTGCTGATGGCCCTGATTATCGATGGCCCCAT < 41bp 1 0.419182068286886 1 0.034393697977066 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110170120 chr1:110170130 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_46426 0 0 1 0 2 AMPD2 chr1:110170140 5'GT 110170140 Upstream 11bp
chr1 145539391 145539391 1 + T C UCEC 145539395 + 145539375 145539415 41 TAGTGCAGAACCTGACTGAACCCCCAGGCCCACCTGTGCAT TAGTGCAGAACCTGACCGAACCCCCAGGCCCACCTGTGCAT < 41bp 1 0.0523084261256256 1 0.0271371603012085 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ITGA10 ENSG00000143127 CDS Human protein_coding chr1:145539395 chr1:145539391 synonymous SNV . 0 17 hm5C_associated_SNPs_46427 0 0 0 0 2 ITGA10 chr1:145539365 3'AG 145539365 Downstream 27bp
chr1 145539391 145539391 1 + T C UCEC 145539395 + 145539375 145539415 41 TAGTGCAGAACCTGACTGAACCCCCAGGCCCACCTGTGCAT TAGTGCAGAACCTGACCGAACCCCCAGGCCCACCTGTGCAT < 41bp 1 0.0523084261256256 1 0.0271371603012085 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ITGA10 ENSG00000143127 CDS Human protein_coding chr1:145539395 chr1:145539391 synonymous SNV . 0 17 hm5C_associated_SNPs_46427 0 0 0 0 2 ITGA10 chr1:145539445 5'GT 145539445 Upstream 55bp
chr7 73635986 73635986 1 + T C UCEC 73636001 + 73635981 73636021 41 TGGAGTATTACAACTGGGGGCGGTTCTCGAAGCCCCCAGAA TGGAGCATTACAACTGGGGGCGGTTCTCGAAGCCCCCAGAA < 41bp 1 0.192550896666495 1 0.22772005200386 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636001 chr7:73635986 nonsynonymous SNV 0.002 1 6 hm5C_associated_SNPs_46428 0 0 1 0 2 LAT2 chr7:73635967 3'AG 73635967 Downstream 20bp
chr7 73635986 73635986 1 + T C UCEC 73636001 + 73635981 73636021 41 TGGAGTATTACAACTGGGGGCGGTTCTCGAAGCCCCCAGAA TGGAGCATTACAACTGGGGGCGGTTCTCGAAGCCCCCAGAA < 41bp 1 0.192550896666495 1 0.22772005200386 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636001 chr7:73635986 nonsynonymous SNV 0.002 1 6 hm5C_associated_SNPs_46428 0 0 1 0 2 LAT2 chr7:73636022 5'GT 73636022 Upstream 37bp
chr3 138341081 138341081 1 + T C UCEC 138341068 + 138341048 138341088 41 TGGATGTTCAAATTAGTGGGCAAAGAAACATTCTATGTTGG TGGATGTTCAAATTAGTGGGCAAAGAAACATTCCATGTTGG < 41bp 1 0.142992574387706 1 0.354736387729645 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAIM ENSG00000158234 CDS Human protein_coding chr3:138341068 chr3:138341081 nonsynonymous SNV 0.980 0 34 hm5C_associated_SNPs_46429 0 0 1 0 1 FAIM chr3:138341030 3'AG 138341030 Downstream 52bp
chr6 35438049 35438049 1 + C T UCEC 35438048 + 35438028 35438068 41 TAAATAAGGCAGGAAAGTTCCCTTCCCTGCTCACACACAAC TAAATAAGGCAGGAAAGTTCCTTTCCCTGCTCACACACAAC < 41bp 1 0.0745630928438182 1 0.0991190373897552 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL10A ENSG00000198755 CDS Human protein_coding chr6:35438048 chr6:35438049 nonsynonymous SNV 0.984 2 22 hm5C_associated_SNPs_46430 0 0 1 0 2 RPL10A chr6:35437956 3'AG 35437956 Downstream 94bp
chr6 35438049 35438049 1 + C T UCEC 35438048 + 35438028 35438068 41 TAAATAAGGCAGGAAAGTTCCCTTCCCTGCTCACACACAAC TAAATAAGGCAGGAAAGTTCCTTTCCCTGCTCACACACAAC < 41bp 1 0.0745630928438182 1 0.0991190373897552 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL10A ENSG00000198755 CDS Human protein_coding chr6:35438048 chr6:35438049 nonsynonymous SNV 0.984 2 22 hm5C_associated_SNPs_46430 0 0 1 0 2 RPL10A chr6:35438128 5'GT 35438128 Upstream 80bp
chr14 89336481 89336481 1 + G A UCEC 89336501 + 89336481 89336521 41 GCATGCATTGGAAGCAACCACTTCTATTCTGATCAGCCAGA ACATGCATTGGAAGCAACCACTTCTATTCTGATCAGCCAGA < 41bp 1 0.253602960714976 1 0.0685049295425415 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTC8 ENSG00000165533 CDS Human protein_coding chr14:89336501 chr14:89336481 nonsynonymous SNV 0.917 4 1 hm5C_associated_SNPs_46431 0 0 1 0 2 TTC8 chr14:89336403 3'AG 89336403 Downstream 79bp
chr14 89336481 89336481 1 + G A UCEC 89336501 + 89336481 89336521 41 GCATGCATTGGAAGCAACCACTTCTATTCTGATCAGCCAGA ACATGCATTGGAAGCAACCACTTCTATTCTGATCAGCCAGA < 41bp 1 0.253602960714976 1 0.0685049295425415 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTC8 ENSG00000165533 CDS Human protein_coding chr14:89336501 chr14:89336481 nonsynonymous SNV 0.917 4 1 hm5C_associated_SNPs_46431 0 0 1 0 2 TTC8 chr14:89336542 5'GT 89336542 Upstream 62bp
chr9 135942540 135942540 1 + T G UCEC 135942521 + 135942501 135942541 41 GGGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTG GGGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACGG < 41bp 1 0.270406710554285 1 0.0648433864116669 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942521 chr9:135942540 synonymous SNV . 0 40 hm5C_associated_SNPs_46433 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 66bp
chr9 135942540 135942540 1 + T G UCEC 135942522 + 135942502 135942542 41 GGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTGA GGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACGGA < 41bp 1 0.395918405426246 1 0.348529934883118 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942522 chr9:135942540 synonymous SNV . 0 39 hm5C_associated_SNPs_46434 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 66bp
chr9 135942540 135942540 1 + T G UCEC 135942523 + 135942503 135942543 41 GTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTGAT GTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACGGAT < 41bp 1 0.364226335792965 1 0.402944415807724 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942523 chr9:135942540 synonymous SNV . 0 38 hm5C_associated_SNPs_46435 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 66bp
chr9 135942540 135942540 1 + T G UCEC 135942539 + 135942519 135942559 41 GGCCCAGTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGC GGCCCAGTGTCTGAAGGTTACGGATCCCCGAGCCCTGACGC < 41bp 1 0.664573321761201 1 0.408039271831512 experiment 0.670853356477598 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942539 chr9:135942540 synonymous SNV . 0 22 hm5C_associated_SNPs_46436 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 66bp
chr9 135942540 135942540 1 + T G UCEC 135942544 + 135942524 135942564 41 AGTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCC AGTGTCTGAAGGTTACGGATCCCCGAGCCCTGACGCTGGCC < 41bp 1 0.310132635748689 1 0.0948033928871155 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942544 chr9:135942540 synonymous SNV . 0 17 hm5C_associated_SNPs_46437 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 66bp
chr9 135942540 135942540 1 + T G UCEC 135942545 + 135942525 135942565 41 GTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCCT GTGTCTGAAGGTTACGGATCCCCGAGCCCTGACGCTGGCCT < 41bp 1 0.695092118786566 1 0.185579240322113 experiment 0.609815762426868 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942545 chr9:135942540 synonymous SNV . 0 16 hm5C_associated_SNPs_46438 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 66bp
chr9 135942540 135942540 1 + T G UCEC 135942546 + 135942526 135942566 41 TGTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCCTA TGTCTGAAGGTTACGGATCCCCGAGCCCTGACGCTGGCCTA < 41bp 1 0.563327629779742 1 0.692672371864319 experiment 0.873344740440515 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942546 chr9:135942540 synonymous SNV . 0 15 hm5C_associated_SNPs_46439 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 66bp
chr9 135942540 135942540 1 + T G UCEC 135942547 + 135942527 135942567 41 GTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCCTAT GTCTGAAGGTTACGGATCCCCGAGCCCTGACGCTGGCCTAT < 41bp 1 0.698682415090174 1 0.689146995544434 experiment 0.602635169819651 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942547 chr9:135942540 synonymous SNV . 0 14 hm5C_associated_SNPs_46440 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 66bp
chr9 135942540 135942540 1 + T G UCEC 135942552 + 135942532 135942572 41 AAGGTTACTGATCCCCGAGCCCTGACGCTGGCCTATAAGGT AAGGTTACGGATCCCCGAGCCCTGACGCTGGCCTATAAGGT < 41bp 1 0.20085280469638 1 0.265565931797028 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135942552 chr9:135942540 synonymous SNV . 0 9 hm5C_associated_SNPs_46441 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 66bp
chr9 135942540 135942540 1 + T G UCEC 135942553 + 135942533 135942573 41 AGGTTACTGATCCCCGAGCCCTGACGCTGGCCTATAAGGTG AGGTTACGGATCCCCGAGCCCTGACGCTGGCCTATAAGGTG < 41bp 1 0.375951557471277 1 0.13490754365921 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135942553 chr9:135942540 synonymous SNV . 0 8 hm5C_associated_SNPs_46442 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 66bp
chr20 30898899 30898899 1 + T C UCEC 30898904 + 30898884 30898924 41 TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGAGAAA TTGCAGAGGAGAAGACGAGGCTGCTGAAGGAGAAAGAGAAA < 41bp 1 0.471695295608805 1 0.380978047847748 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898904 chr20:30898899 nonsynonymous SNV 1.000 0 16 hm5C_associated_SNPs_46443 0 0 0 0 3 KIF3B chr20:30898832 3'AG 30898832 Downstream 68bp
chr20 30898899 30898899 1 + T C UCEC 30898904 + 30898884 30898924 41 TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGAGAAA TTGCAGAGGAGAAGACGAGGCTGCTGAAGGAGAAAGAGAAA < 41bp 1 0.471695295608805 1 0.380978047847748 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898904 chr20:30898899 nonsynonymous SNV 1.000 0 16 hm5C_associated_SNPs_46443 0 0 0 0 3 KIF3B chr20:30898890 3'AG 30898890 Downstream 10bp
chr20 30898899 30898899 1 + T C UCEC 30898904 + 30898884 30898924 41 TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGAGAAA TTGCAGAGGAGAAGACGAGGCTGCTGAAGGAGAAAGAGAAA < 41bp 1 0.471695295608805 1 0.380978047847748 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898904 chr20:30898899 nonsynonymous SNV 1.000 0 16 hm5C_associated_SNPs_46443 0 0 0 0 3 KIF3B chr20:30898984 5'GT 30898984 Upstream 86bp
chr10 72294269 72294269 1 + A G UCEC 72294256 + 72294236 72294276 41 AGCTTTCTCCGCATGGTGCCCCAGGGAAGGAGGATGGTGGA AGCTTTCTCCGCATGGTGCCCCAGGGAAGGAGGGTGGTGGA < 41bp 1 0.339846075561236 1 0.843538284301758 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72294256 chr10:72294269 nonsynonymous SNV 0.989 0 34 hm5C_associated_SNPs_46444 0 0 0 0 2 PALD1 chr10:72294181 3'AG 72294181 Downstream 89bp
chr10 72294269 72294269 1 + A G UCEC 72294256 + 72294236 72294276 41 AGCTTTCTCCGCATGGTGCCCCAGGGAAGGAGGATGGTGGA AGCTTTCTCCGCATGGTGCCCCAGGGAAGGAGGGTGGTGGA < 41bp 1 0.339846075561236 1 0.843538284301758 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72294256 chr10:72294269 nonsynonymous SNV 0.989 0 34 hm5C_associated_SNPs_46444 0 0 0 0 2 PALD1 chr10:72294280 5'GT 72294280 Upstream 12bp
chr5 148743721 148743721 1 + A C UCEC 148743717 + 148743697 148743737 41 CGCCTCTGGTGGCACTATGGCATCAGCTTCCTGAGGCTGCA CGCCTCTGGTGGCACTATGGCATCCGCTTCCTGAGGCTGCA < 41bp 1 0.153653875880873 1 0.166896551847458 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCYOX1L ENSG00000145882 CDS Human protein_coding chr5:148743717 chr5:148743721 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_46445 0 0 0 0 1 PCYOX1L chr5:148743773 5'GT 148743773 Upstream 53bp
chr2 101622471 101622471 1 + A G UCEC 101622453 + 101622433 101622473 41 CCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGGATG CCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGGGTG < 41bp 1 0.759794920215416 1 0.67027485370636 experiment 0.480410159569168 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622453 chr2:101622471 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_46446 0 0 1 0 2 RPL31 chr2:101622421 3'AG 101622421 Downstream 51bp
chr2 101622471 101622471 1 + A G UCEC 101622453 + 101622433 101622473 41 CCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGGATG CCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGGGTG < 41bp 1 0.759794920215416 1 0.67027485370636 experiment 0.480410159569168 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622453 chr2:101622471 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_46446 0 0 1 0 2 RPL31 chr2:101622533 5'GT 101622533 Upstream 63bp
chr2 101622471 101622471 1 + A G UCEC 101622461 + 101622441 101622481 41 GTGTGCGGCTGTCCAGAAAACGTAATGAGGATGAAGATTCA GTGTGCGGCTGTCCAGAAAACGTAATGAGGGTGAAGATTCA < 41bp 1 0.681226246024427 1 0.366963148117065 experiment 0.637547507951146 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622461 chr2:101622471 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_46447 0 0 1 0 2 RPL31 chr2:101622421 3'AG 101622421 Downstream 51bp
chr2 101622471 101622471 1 + A G UCEC 101622461 + 101622441 101622481 41 GTGTGCGGCTGTCCAGAAAACGTAATGAGGATGAAGATTCA GTGTGCGGCTGTCCAGAAAACGTAATGAGGGTGAAGATTCA < 41bp 1 0.681226246024427 1 0.366963148117065 experiment 0.637547507951146 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622461 chr2:101622471 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_46447 0 0 1 0 2 RPL31 chr2:101622533 5'GT 101622533 Upstream 63bp
chr3 111685472 111685472 1 + A G UCEC 111685463 + 111685443 111685483 41 TTTGGTGTTTCATTCAGTGCCAGCACTTCAAATATTGCTAG TTTGGTGTTTCATTCAGTGCCAGCACTTCGAATATTGCTAG < 41bp 1 0.495783252620322 1 0.409136950969696 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111685463 chr3:111685472 synonymous SNV . 0 30 hm5C_associated_SNPs_46448 0 0 0 0 1 PHLDB2 chr3:111685460 3'AG 111685460 Downstream 13bp
chr19 46519609 46519609 1 + T G UCEC 46519595 + 46519575 46519615 41 GGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTTTGTGAA GGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTGTGTGAA < 41bp 1 0.242500150399802 1 0.16842445731163 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46519595 chr19:46519609 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_46449 0 0 0 0 2 CCDC61 chr19:46519576 3'AG 46519576 Downstream 34bp
chr19 46519609 46519609 1 + T G UCEC 46519595 + 46519575 46519615 41 GGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTTTGTGAA GGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTGTGTGAA < 41bp 1 0.242500150399802 1 0.16842445731163 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46519595 chr19:46519609 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_46449 0 0 0 0 2 CCDC61 chr19:46519651 5'GT 46519651 Upstream 43bp
chr3 108353782 108353782 1 + A G UCEC 108353763 + 108353743 108353783 41 AAAGTTGCTGTGTTTATTTCCATAAAATTTGCTGGAAAAAG AAAGTTGCTGTGTTTATTTCCATAAAATTTGCTGGAAAAGG < 41bp 1 0.148575814870318 1 0.468699812889099 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108353763 chr3:108353782 nonsynonymous SNV 0.999 0 40 hm5C_associated_SNPs_46450 0 0 1 0 1 DZIP3 chr3:108353819 5'GT 108353819 Upstream 38bp
chr3 66431203 66431203 1 - A G UCEC 66431223 - 66431203 66431243 41 TGGACTGTTACTCCAGGGGACAAGCCTTCCACCCCCAGCCT TGGACTGTTACTCCAGGGGACAAGCCTTCCACCCCCAGCCC < 41bp 1 0.245036309684303 1 0.148802876472473 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66431223 chr3:66431203 synonymous SNV . 0 41 hm5C_associated_SNPs_46453 0 0 1 0 1 LRIG1 chr3:66431285 3'AG 66431285 Downstream 83bp
chr2 70096956 70096956 1 + G A UCS 70096964 + 70096944 70096984 41 CAGCCATGTAGCGGATCTGTCAGTTTACAGCCTCGAAGGAG CAGCCATGTAGCAGATCTGTCAGTTTACAGCCTCGAAGGAG < 41bp 1 0.336672661886238 1 0.112870126962662 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GMCL1 ENSG00000087338 CDS Human protein_coding chr2:70096964 chr2:70096956 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_46460 0 0 1 0 1 GMCL1 chr2:70096996 5'GT 70096996 Upstream 41bp
chr3 182597349 182597349 1 + T G UCS 182597357 + 182597337 182597377 41 TATCTCTTGCACTCAGGGAGCATGAAAAACTATTTATGGAA TATCTCTTGCACGCAGGGAGCATGAAAAACTATTTATGGAA < 41bp 1 0.537652506981086 1 0.495155870914459 experiment 0.924694986037828 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP11B ENSG00000058063 CDS Human protein_coding chr3:182597357 chr3:182597349 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_46462 0 0 0 0 2 ATP11B chr3:182597284 3'AG 182597284 Downstream 66bp
chr3 182597349 182597349 1 + T G UCS 182597357 + 182597337 182597377 41 TATCTCTTGCACTCAGGGAGCATGAAAAACTATTTATGGAA TATCTCTTGCACGCAGGGAGCATGAAAAACTATTTATGGAA < 41bp 1 0.537652506981086 1 0.495155870914459 experiment 0.924694986037828 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP11B ENSG00000058063 CDS Human protein_coding chr3:182597357 chr3:182597349 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_46462 0 0 0 0 2 ATP11B chr3:182597437 5'GT 182597437 Upstream 89bp
chr20 33764024 33764024 1 + A G UCS 33764041 + 33764021 33764061 41 TCTAGAGCCCATGTCTTCTTCGAAGTGGCTGTGAATGGGAG TCTGGAGCCCATGTCTTCTTCGAAGTGGCTGTGAATGGGAG < 41bp 1 0.711013091779659 1 0.829120755195618 experiment 0.577973816440683 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PROCR ENSG00000101000 CDS Human protein_coding chr20:33764041 chr20:33764024 nonsynonymous SNV 0.462 0 4 hm5C_associated_SNPs_46465 0 0 1 0 1 PROCR chr20:33763971 3'AG 33763971 Downstream 54bp
chr3 12531391 12531391 1 + A G UCS 12531390 + 12531370 12531410 41 CAATCCCTTTTGGTCAGGACCATGGTCCTCTGAAAGAATTC CAATCCCTTTTGGTCAGGACCGTGGTCCTCTGAAAGAATTC < 41bp 1 0.380000074910828 1 0.238172292709351 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12531390 chr3:12531391 nonsynonymous SNV 0.009 0 22 hm5C_associated_SNPs_46466 0 0 1 0 1 TSEN2 chr3:12531488 5'GT 12531488 Upstream 98bp
chr5 176016580 176016580 1 + A G UCS 176016578 + 176016558 176016598 41 GCGGCTGCAGTTCTCCACACCGAAGGAGGAGGTGGGCGCCA GCGGCTGCAGTTCTCCACACCGGAGGAGGAGGTGGGCGCCA < 41bp 1 0.688082409656867 1 0.88076376914978 experiment 0.623835180686267 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176016578 chr5:176016580 nonsynonymous SNV 0.045 0 23 hm5C_associated_SNPs_46468 0 0 0 0 2 CDHR2 chr5:176016529 3'AG 176016529 Downstream 52bp
chr5 176016580 176016580 1 + A G UCS 176016578 + 176016558 176016598 41 GCGGCTGCAGTTCTCCACACCGAAGGAGGAGGTGGGCGCCA GCGGCTGCAGTTCTCCACACCGGAGGAGGAGGTGGGCGCCA < 41bp 1 0.688082409656867 1 0.88076376914978 experiment 0.623835180686267 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176016578 chr5:176016580 nonsynonymous SNV 0.045 0 23 hm5C_associated_SNPs_46468 0 0 0 0 2 CDHR2 chr5:176016617 5'GT 176016617 Upstream 38bp
chr2 27449457 27449457 1 + G T UCS 27449451 + 27449431 27449471 41 CTCTGCCCTGGCCAGTAAGGCCACAGGTTATCCACTGGCTT CTCTGCCCTGGCCAGTAAGGCCACAGTTTATCCACTGGCTT < 41bp 1 0.179878684624033 1 0.103307127952576 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27449451 chr2:27449457 nonsynonymous SNV 0.997 4 27 hm5C_associated_SNPs_46469 0 0 1 0 2 CAD chr2:27449393 3'AG 27449393 Downstream 65bp
chr2 27449457 27449457 1 + G T UCS 27449451 + 27449431 27449471 41 CTCTGCCCTGGCCAGTAAGGCCACAGGTTATCCACTGGCTT CTCTGCCCTGGCCAGTAAGGCCACAGTTTATCCACTGGCTT < 41bp 1 0.179878684624033 1 0.103307127952576 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27449451 chr2:27449457 nonsynonymous SNV 0.997 4 27 hm5C_associated_SNPs_46469 0 0 1 0 2 CAD chr2:27449517 5'GT 27449517 Upstream 61bp
chr16 55523609 55523609 1 + C A UCS 55523610 + 55523590 55523630 41 AAGGTGCCCCCTGTGTCTTCCCCTTCACTTTCCTGGGCAAC AAGGTGCCCCCTGTGTCTTACCCTTCACTTTCCTGGGCAAC < 41bp 1 0.0408769256547511 1 0.167140007019043 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP2 ENSG00000087245 CDS Human protein_coding chr16:55523610 chr16:55523609 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_46470 0 0 0 0 1 MMP2 chr16:55523563 3'AG 55523563 Downstream 47bp
chr16 89620289 89620289 1 + C T UCS 89620301 + 89620281 89620321 41 GCCCATCTCCTTCCCTGAGGCGCAGGAGGGCCTCATGGGCA GCCCATCTTCTTCCCTGAGGCGCAGGAGGGCCTCATGGGCA < 41bp 1 0.67613874393565 1 0.488814413547516 experiment 0.6477225121287 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPG7 ENSG00000197912 CDS Human protein_coding chr16:89620301 chr16:89620289 nonsynonymous SNV 0.572 5 9 hm5C_associated_SNPs_46476 0 0 1 0 2 SPG7 chr16:89620202 3'AG 89620202 Downstream 88bp
chr16 89620289 89620289 1 + C T UCS 89620301 + 89620281 89620321 41 GCCCATCTCCTTCCCTGAGGCGCAGGAGGGCCTCATGGGCA GCCCATCTTCTTCCCTGAGGCGCAGGAGGGCCTCATGGGCA < 41bp 1 0.67613874393565 1 0.488814413547516 experiment 0.6477225121287 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPG7 ENSG00000197912 CDS Human protein_coding chr16:89620301 chr16:89620289 nonsynonymous SNV 0.572 5 9 hm5C_associated_SNPs_46476 0 0 1 0 2 SPG7 chr16:89620368 5'GT 89620368 Upstream 80bp
chr7 129950692 129950692 1 + G C UCS 129950672 + 129950652 129950692 41 CTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTGG CTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTGC < 41bp 1 0.100307724782336 1 0.0367678999900818 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950672 chr7:129950692 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_46477 0 0 0 0 1 CPA4 chr7:129950627 3'AG 129950627 Downstream 66bp
chr2 207024682 207024682 1 + G A UCS 207024663 + 207024643 207024683 41 GCGCCCACAATTTGCGCGCTCTCTTTCTGCTGCTCCCCAGC GCGCCCACAATTTGCGCGCTCTCTTTCTGCTGCTCCCCAAC < 41bp 1 0.385742108004596 1 0.0206138789653778 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EEF1B2 ENSG00000114942 splicing Human protein_coding chr2:207024663 chr2:207024682 . . 0 40 hm5C_associated_SNPs_46480 0 0 1 0 1 EEF1B2 chr2:207024637 3'AG 207024637 Downstream 46bp
chr2 207024682 207024682 1 + G A UCS 207024687 + 207024667 207024707 41 TTCTGCTGCTCCCCAGCTCTCGGATACAGCCGACACCATGG TTCTGCTGCTCCCCAACTCTCGGATACAGCCGACACCATGG < 41bp 1 0.700119130333703 1 0.520067751407623 experiment 0.599761739332594 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EEF1B2 ENSG00000114942 splicing Human protein_coding chr2:207024687 chr2:207024682 . . 0 16 hm5C_associated_SNPs_46481 0 0 1 0 1 EEF1B2 chr2:207024637 3'AG 207024637 Downstream 46bp
chr2 207024682 207024682 1 + G A UCS 207024693 + 207024673 207024713 41 TGCTCCCCAGCTCTCGGATACAGCCGACACCATGGGTTTCG TGCTCCCCAACTCTCGGATACAGCCGACACCATGGGTTTCG < 41bp 1 0.51404510878087 1 0.173482865095139 experiment 0.971909782438261 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EEF1B2 ENSG00000114942 splicing Human protein_coding chr2:207024693 chr2:207024682 . . 0 10 hm5C_associated_SNPs_46482 0 0 1 0 1 EEF1B2 chr2:207024637 3'AG 207024637 Downstream 46bp
chr18 7955218 7955218 1 + T C UCS 7955214 + 7955194 7955234 41 ACTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTG ACTCCATCAATGGGGATGGGCCCACTGTGGCCCGAGAGGTG < 41bp 1 0.0828613367108878 1 0.156250149011612 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955214 chr18:7955218 nonsynonymous SNV 0.971 4 25 hm5C_associated_SNPs_46483 0 0 0 0 1 PTPRM chr18:7955119 3'AG 7955119 Downstream 100bp
chr18 7955218 7955218 1 + T C UCS 7955215 + 7955195 7955235 41 CTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGG CTCCATCAATGGGGATGGGCCCACTGTGGCCCGAGAGGTGG < 41bp 1 0.153270238977937 1 0.174473404884338 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955215 chr18:7955218 nonsynonymous SNV 0.971 4 24 hm5C_associated_SNPs_46484 0 0 0 0 1 PTPRM chr18:7955119 3'AG 7955119 Downstream 100bp
chr18 7955218 7955218 1 + T C UCS 7955216 + 7955196 7955236 41 TCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGGA TCCATCAATGGGGATGGGCCCACTGTGGCCCGAGAGGTGGA < 41bp 1 0.26839443449243 1 0.344220638275146 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955216 chr18:7955218 nonsynonymous SNV 0.971 4 23 hm5C_associated_SNPs_46485 0 0 0 0 1 PTPRM chr18:7955119 3'AG 7955119 Downstream 100bp
chr18 7955218 7955218 1 + T C UCS 7955224 + 7955204 7955244 41 TGGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCA TGGGGATGGGCCCACTGTGGCCCGAGAGGTGGAGTACTGCA < 41bp 1 0.582494567201372 1 0.196767061948776 experiment 0.835010865597256 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955224 chr18:7955218 nonsynonymous SNV 0.971 4 15 hm5C_associated_SNPs_46486 0 0 0 0 1 PTPRM chr18:7955119 3'AG 7955119 Downstream 100bp
chr18 7955218 7955218 1 + T C UCS 7955225 + 7955205 7955245 41 GGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCAC GGGGATGGGCCCACTGTGGCCCGAGAGGTGGAGTACTGCAC < 41bp 1 0.296173829314855 1 0.526147544384003 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955225 chr18:7955218 nonsynonymous SNV 0.971 4 14 hm5C_associated_SNPs_46487 0 0 0 0 1 PTPRM chr18:7955119 3'AG 7955119 Downstream 100bp
chr18 7955218 7955218 1 + T C UCS 7955226 + 7955206 7955246 41 GGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCACG GGGATGGGCCCACTGTGGCCCGAGAGGTGGAGTACTGCACG < 41bp 1 0.691104469487091 1 0.567152202129364 experiment 0.617791061025817 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955226 chr18:7955218 nonsynonymous SNV 0.971 4 13 hm5C_associated_SNPs_46488 0 0 0 0 1 PTPRM chr18:7955119 3'AG 7955119 Downstream 100bp
chr12 124102387 124102387 1 + T C UCS 124102395 + 124102375 124102415 41 CCCATGGAAGAGTCATACATCAATTTCCTTGCAATTAACCA CCCATGGAAGAGCCATACATCAATTTCCTTGCAATTAACCA < 41bp 1 0.157487373577913 1 0.151721030473709 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX55 ENSG00000111364 CDS Human protein_coding chr12:124102395 chr12:124102387 nonsynonymous SNV 0.968 1 13 hm5C_associated_SNPs_46489 0 0 1 0 2 DDX55 chr12:124102305 3'AG 124102305 Downstream 83bp
chr12 124102387 124102387 1 + T C UCS 124102395 + 124102375 124102415 41 CCCATGGAAGAGTCATACATCAATTTCCTTGCAATTAACCA CCCATGGAAGAGCCATACATCAATTTCCTTGCAATTAACCA < 41bp 1 0.157487373577913 1 0.151721030473709 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX55 ENSG00000111364 CDS Human protein_coding chr12:124102395 chr12:124102387 nonsynonymous SNV 0.968 1 13 hm5C_associated_SNPs_46489 0 0 1 0 2 DDX55 chr12:124102419 5'GT 124102419 Upstream 33bp
chr1 151633298 151633298 1 + A C UCS 151633305 + 151633285 151633325 41 CGAGTAATTGGTGAGAGTGACATCATGCAGGAATTCCTATC CGAGTAATTGGTGCGAGTGACATCATGCAGGAATTCCTATC < 41bp 1 0.35516781789671 1 0.273854434490204 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX27 ENSG00000143376 CDS Human protein_coding chr1:151633305 chr1:151633298 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_46490 0 0 1 0 1 SNX27 chr1:151633338 5'GT 151633338 Upstream 41bp
chr12 12038927 12038927 1 + T C UCS 12038928 + 12038908 12038948 41 TACTACAAACTAAACATTATCAGGAAGGAGCCAGGACAAAG TACTACAAACTAAACATTACCAGGAAGGAGCCAGGACAAAG < 41bp 1 0.716847553602877 1 0.420215338468552 experiment 0.566304892794246 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ETV6 ENSG00000139083 CDS Human protein_coding chr12:12038928 chr12:12038927 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_46492 0 0 1 0 2 ETV6 chr12:12038860 3'AG 12038860 Downstream 68bp
chr12 12038927 12038927 1 + T C UCS 12038928 + 12038908 12038948 41 TACTACAAACTAAACATTATCAGGAAGGAGCCAGGACAAAG TACTACAAACTAAACATTACCAGGAAGGAGCCAGGACAAAG < 41bp 1 0.716847553602877 1 0.420215338468552 experiment 0.566304892794246 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ETV6 ENSG00000139083 CDS Human protein_coding chr12:12038928 chr12:12038927 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_46492 0 0 1 0 2 ETV6 chr12:12038960 5'GT 12038960 Upstream 34bp
chr3 45537860 45537860 1 + A G UCS 45537850 + 45537830 45537870 41 CTACTTCAGATACACTGACCCTCATAATCCACACAGGTAAA CTACTTCAGATACACTGACCCTCATAATCCGCACAGGTAAA < 41bp 1 0.140804023639432 1 0.0423054695129395 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LARS2 ENSG00000011376 CDS Human protein_coding chr3:45537850 chr3:45537860 synonymous SNV . 0 31 hm5C_associated_SNPs_46494 0 0 0 0 2 LARS2 chr3:45537767 3'AG 45537767 Downstream 94bp
chr3 45537860 45537860 1 + A G UCS 45537850 + 45537830 45537870 41 CTACTTCAGATACACTGACCCTCATAATCCACACAGGTAAA CTACTTCAGATACACTGACCCTCATAATCCGCACAGGTAAA < 41bp 1 0.140804023639432 1 0.0423054695129395 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LARS2 ENSG00000011376 CDS Human protein_coding chr3:45537850 chr3:45537860 synonymous SNV . 0 31 hm5C_associated_SNPs_46494 0 0 0 0 2 LARS2 chr3:45537865 5'GT 45537865 Upstream 6bp
chr19 1453536 1453536 1 + C T UCS 1453533 + 1453513 1453553 41 GAGGGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAG GAGGGCAGCCCAGTACACGGCTCTGGGCCCTCCAAGGACAG < 41bp 1 0.163462775202715 1 0.199636876583099 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453533 chr19:1453536 synonymous SNV . 0 24 hm5C_associated_SNPs_46495 0 0 0 0 1 APC2 chr19:1453610 5'GT 1453610 Upstream 75bp
chr19 1453536 1453536 1 + C T UCS 1453535 + 1453515 1453555 41 GGGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCT GGGCAGCCCAGTACACGGCTCTGGGCCCTCCAAGGACAGCT < 41bp 1 0.346038671249998 1 0.530401349067688 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453535 chr19:1453536 synonymous SNV . 0 22 hm5C_associated_SNPs_46496 0 0 0 0 1 APC2 chr19:1453610 5'GT 1453610 Upstream 75bp
chr19 1453536 1453536 1 + C T UCS 1453540 + 1453520 1453560 41 GCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCTTTGGG GCCCAGTACACGGCTCTGGGCCCTCCAAGGACAGCTTTGGG < 41bp 1 0.0169285384830692 1 0.0413437187671661 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453540 chr19:1453536 synonymous SNV . 0 17 hm5C_associated_SNPs_46497 0 0 0 0 1 APC2 chr19:1453610 5'GT 1453610 Upstream 75bp
chr19 1453536 1453536 1 + C T UCS 1453541 + 1453521 1453561 41 CCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCTTTGGGG CCCAGTACACGGCTCTGGGCCCTCCAAGGACAGCTTTGGGG < 41bp 1 0.015292196039987 1 0.0944604873657227 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453541 chr19:1453536 synonymous SNV . 0 16 hm5C_associated_SNPs_46498 0 0 0 0 1 APC2 chr19:1453610 5'GT 1453610 Upstream 75bp
chr11 209947 209947 1 + C A UCS 209927 + 209907 209947 41 GCTCCTTCCTTCCCAAGAGACTGAGCGGGCCATGGAGATCC GCTCCTTCCTTCCCAAGAGACTGAGCGGGCCATGGAGATCA < 41bp 1 0.574401931601423 1 0.152616828680038 experiment 0.851196136797153 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:209927 chr11:209947 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_46499 0 0 1 0 1 RIC8A chr11:210000 5'GT 210000 Upstream 54bp
chr2 75882241 75882241 1 + A C UCS 75882235 + 75882215 75882255 41 CCTGGTCTAAACGCTGGGAACGTCCAAATTTTAATATTAAA CCTGGTCTAAACGCTGGGAACGTCCACATTTTAATATTAAA < 41bp 1 0.0672027887374371 1 0.134790271520615 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRPL19 ENSG00000115364 CDS Human protein_coding chr2:75882235 chr2:75882241 nonsynonymous SNV 0.804 1 27 hm5C_associated_SNPs_46500 0 0 1 0 1 MRPL19 chr2:75882190 3'AG 75882190 Downstream 52bp
chr11 47297547 47297547 1 + C T UCS 47297563 + 47297543 47297583 41 CTATCGATTGCTGCGCTCCCCAGTACCCGTCTCTGGGCAGA CTATTGATTGCTGCGCTCCCCAGTACCCGTCTCTGGGCAGA < 41bp 1 0.51984815781281 1 0.567916750907898 experiment 0.960303684374379 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MADD ENSG00000110514 CDS Human protein_coding chr11:47297563 chr11:47297547 stopgain 0.998 1 5 hm5C_associated_SNPs_46501 0 0 1 0 1 MADD chr11:47297450 3'AG 47297450 Downstream 98bp
chr14 51057742 51057742 1 + A C UCS 51057723 + 51057703 51057743 41 TTTTTCATGGAGAGGTGGATCTGAGCGAGAGACCACAGGAA TTTTTCATGGAGAGGTGGATCTGAGCGAGAGACCACAGGCA < 41bp 1 0.641863658067006 1 0.179550170898438 experiment 0.716272683865989 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATL1 ENSG00000198513 CDS Human protein_coding chr14:51057723 chr14:51057742 synonymous SNV . 0 40 hm5C_associated_SNPs_46502 0 0 1 0 2 ATL1 chr14:51057659 3'AG 51057659 Downstream 84bp
chr14 51057742 51057742 1 + A C UCS 51057723 + 51057703 51057743 41 TTTTTCATGGAGAGGTGGATCTGAGCGAGAGACCACAGGAA TTTTTCATGGAGAGGTGGATCTGAGCGAGAGACCACAGGCA < 41bp 1 0.641863658067006 1 0.179550170898438 experiment 0.716272683865989 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATL1 ENSG00000198513 CDS Human protein_coding chr14:51057723 chr14:51057742 synonymous SNV . 0 40 hm5C_associated_SNPs_46502 0 0 1 0 2 ATL1 chr14:51057793 5'GT 51057793 Upstream 52bp
chr11 126279209 126279209 1 + A C UCS 126279193 + 126279173 126279213 41 GTTTCTGGAAACAGCCTCCCCTCATCTGGGATGTCAATCCT GTTTCTGGAAACAGCCTCCCCTCATCTGGGATGTCACTCCT < 41bp 1 0.402263054846272 1 0.216026872396469 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ST3GAL4 ENSG00000110080 CDS Human protein_coding chr11:126279193 chr11:126279209 nonsynonymous SNV 0.979 0 37 hm5C_associated_SNPs_46503 0 0 1 0 2 ST3GAL4 chr11:126279163 3'AG 126279163 Downstream 47bp
chr11 126279209 126279209 1 + A C UCS 126279193 + 126279173 126279213 41 GTTTCTGGAAACAGCCTCCCCTCATCTGGGATGTCAATCCT GTTTCTGGAAACAGCCTCCCCTCATCTGGGATGTCACTCCT < 41bp 1 0.402263054846272 1 0.216026872396469 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ST3GAL4 ENSG00000110080 CDS Human protein_coding chr11:126279193 chr11:126279209 nonsynonymous SNV 0.979 0 37 hm5C_associated_SNPs_46503 0 0 1 0 2 ST3GAL4 chr11:126279306 5'GT 126279306 Upstream 98bp
chr22 42273340 42273340 1 + T G UCS 42273332 + 42273312 42273352 41 TCCTGTGCCTCTCCTTTAACCCCCTGACTTCCCTGCTGCAG TCCTGTGCCTCTCCTTTAACCCCCTGACGTCCCTGCTGCAG < 41bp 1 0.26482152096788 1 0.0382526218891144 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42273332 chr22:42273340 synonymous SNV . 0 29 hm5C_associated_SNPs_46504 0 0 1 0 1 SREBF2 chr22:42273425 5'GT 42273425 Upstream 86bp
chr10 102242045 102242045 1 + G T UCS 102242029 + 102242009 102242049 41 CTCCTAGCTCTCTCCCCAGGCGGTGAAGGGCACCATGAAAC CTCCTAGCTCTCTCCCCAGGCGGTGAAGGGCACCATTAAAC < 41bp 1 0.403637662016759 1 0.683289051055908 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WNT8B ENSG00000075290 CDS Human protein_coding chr10:102242029 chr10:102242045 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_46505 0 0 0 0 1 WNT8B chr10:102242028 3'AG 102242028 Downstream 18bp
chr1 198231762 198231762 1 + C A UCS 198231746 + 198231726 198231766 41 AAAGCACGTGCTGATTGCATCAAAGAAATAGATCTTCTTAA AAAGCACGTGCTGATTGCATCAAAGAAATAGATCTTATTAA < 41bp 1 0.299555967474805 1 0.663023591041565 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231746 chr1:198231762 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_46506 0 0 0 0 2 NEK7 chr1:198231705 3'AG 198231705 Downstream 58bp
chr1 198231762 198231762 1 + C A UCS 198231746 + 198231726 198231766 41 AAAGCACGTGCTGATTGCATCAAAGAAATAGATCTTCTTAA AAAGCACGTGCTGATTGCATCAAAGAAATAGATCTTATTAA < 41bp 1 0.299555967474805 1 0.663023591041565 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231746 chr1:198231762 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_46506 0 0 0 0 2 NEK7 chr1:198231767 5'GT 198231767 Upstream 6bp
chr11 12243276 12243276 1 + G A UCS 12243280 + 12243260 12243300 41 AAGAGCTGGAACCAGGGCACCCCTCCCCTGGAGCTGCTGGC AAGAGCTGGAACCAGGACACCCCTCCCCTGGAGCTGCTGGC < 41bp 1 0.0428645982407382 1 0.123917520046234 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12243280 chr11:12243276 nonsynonymous SNV 0.905 4 17 hm5C_associated_SNPs_46507 0 0 1 0 2 MICAL2 chr11:12243191 3'AG 12243191 Downstream 86bp
chr11 12243276 12243276 1 + G A UCS 12243280 + 12243260 12243300 41 AAGAGCTGGAACCAGGGCACCCCTCCCCTGGAGCTGCTGGC AAGAGCTGGAACCAGGACACCCCTCCCCTGGAGCTGCTGGC < 41bp 1 0.0428645982407382 1 0.123917520046234 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12243280 chr11:12243276 nonsynonymous SNV 0.905 4 17 hm5C_associated_SNPs_46507 0 0 1 0 2 MICAL2 chr11:12243306 5'GT 12243306 Upstream 31bp
chr19 11114067 11114067 1 + G T UCS 11114055 + 11114035 11114075 41 TCTGATAGTGAAGAAAGTGGCTCAGAAGAAGAGGAAGAGGT TCTGATAGTGAAGAAAGTGGCTCAGAAGAAGATGAAGAGGT < 41bp 1 0.249374267177946 1 0.241566956043243 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114055 chr19:11114067 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_46508 0 0 1 0 2 SMARCA4 chr19:11114016 3'AG 11114016 Downstream 52bp
chr19 11114067 11114067 1 + G T UCS 11114055 + 11114035 11114075 41 TCTGATAGTGAAGAAAGTGGCTCAGAAGAAGAGGAAGAGGT TCTGATAGTGAAGAAAGTGGCTCAGAAGAAGATGAAGAGGT < 41bp 1 0.249374267177946 1 0.241566956043243 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114055 chr19:11114067 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_46508 0 0 1 0 2 SMARCA4 chr19:11114073 5'GT 11114073 Upstream 7bp
chr19 11114067 11114067 1 + G T UCS 11114057 + 11114037 11114077 41 TGATAGTGAAGAAAGTGGCTCAGAAGAAGAGGAAGAGGTAA TGATAGTGAAGAAAGTGGCTCAGAAGAAGATGAAGAGGTAA < 41bp 1 0.308759633948511 1 0.37165692448616 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114057 chr19:11114067 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_46509 0 0 1 0 2 SMARCA4 chr19:11114016 3'AG 11114016 Downstream 52bp
chr19 11114067 11114067 1 + G T UCS 11114057 + 11114037 11114077 41 TGATAGTGAAGAAAGTGGCTCAGAAGAAGAGGAAGAGGTAA TGATAGTGAAGAAAGTGGCTCAGAAGAAGATGAAGAGGTAA < 41bp 1 0.308759633948511 1 0.37165692448616 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114057 chr19:11114067 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_46509 0 0 1 0 2 SMARCA4 chr19:11114073 5'GT 11114073 Upstream 7bp
chr21 17250147 17250147 1 + A G UCS 17250131 + 17250111 17250151 41 TAAGAAATTAAATGAGCAAGCCGCAGAACTCTTCGAATCTG TAAGAAATTAAATGAGCAAGCCGCAGAACTCTTCGAGTCTG < 41bp 1 0.550826315587796 1 0.466736823320389 experiment 0.898347368824407 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP25 ENSG00000155313 CDS Human protein_coding chr21:17250131 chr21:17250147 synonymous SNV . 0 37 hm5C_associated_SNPs_46510 0 0 1 0 1 USP25 chr21:17250115 3'AG 17250115 Downstream 33bp
chr12 64173847 64173847 1 + C G UCS 64173833 + 64173813 64173853 41 TACCACGTCTTCTTCGGGCGCCGCCGCCAGGCGCCGGCCGG TACCACGTCTTCTTCGGGCGCCGCCGCCAGGCGCGGGCCGG < 41bp 1 0.41572330767896 1 0.145813256502151 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control TMEM5 ENSG00000118600 CDS Human protein_coding chr12:64173833 chr12:64173847 nonsynonymous SNV 0.207 0 35 hm5C_associated_SNPs_46511 0 0 1 0 1 TMEM5 chr12:64173909 5'GT 64173909 Upstream 63bp
chr19 19627058 19627058 1 + C T UCS 19627040 + 19627020 19627060 41 GGGACCGGAAGTGTGGGATACTGCGAGTATGGCGGCGTCAA GGGACCGGAAGTGTGGGATACTGCGAGTATGGCGGCGTTAA < 41bp 1 0.64040545354633 1 0.333201050758362 experiment 0.71918909290734 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFA13 ENSG00000186010;ENSG00000250067;ENSG00000258674 CDS Human other chr19:19627040 chr19:19627058 nonsynonymous SNV 0.201 1 39 hm5C_associated_SNPs_46512 0 0 1 0 1 NDUFA13 chr19:19627141 5'GT 19627141 Upstream 84bp
chr2 109104168 109104168 1 + C A UCS 109104161 + 109104141 109104181 41 TTTAAATGTTATAGGCAGAACAAGCTACTGTAACCTCTGAA TTTAAATGTTATAGGCAGAACAAGCTAATGTAACCTCTGAA < 41bp 1 0.189800229005264 1 0.374947816133499 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GCC2 ENSG00000135968 CDS Human protein_coding chr2:109104161 chr2:109104168 nonsynonymous SNV 0.949 0 28 hm5C_associated_SNPs_46513 0 0 1 0 1 GCC2 chr2:109104155 3'AG 109104155 Downstream 14bp
chr12 50834308 50834308 1 + C G UCS 50834317 + 50834297 50834337 41 TATATCACTTTCCAGTCAGACACAGATGCACAACAGGTAAG TATATCACTTTGCAGTCAGACACAGATGCACAACAGGTAAG < 41bp 1 0.579639544935193 1 0.425335198640823 experiment 0.840720910129614 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LARP4 ENSG00000161813 CDS Human protein_coding chr12:50834317 chr12:50834308 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_46514 0 0 1 0 2 LARP4 chr12:50834222 3'AG 50834222 Downstream 87bp
chr12 50834308 50834308 1 + C G UCS 50834317 + 50834297 50834337 41 TATATCACTTTCCAGTCAGACACAGATGCACAACAGGTAAG TATATCACTTTGCAGTCAGACACAGATGCACAACAGGTAAG < 41bp 1 0.579639544935193 1 0.425335198640823 experiment 0.840720910129614 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LARP4 ENSG00000161813 CDS Human protein_coding chr12:50834317 chr12:50834308 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_46514 0 0 1 0 2 LARP4 chr12:50834332 5'GT 50834332 Upstream 25bp
chr7 2395011 2395011 1 + C G UCS 2394994 + 2394974 2395014 41 CCCCGGGCGCTGGAGAACGGCGACGCGGACGAGCCCTCCTT CCCCGGGCGCTGGAGAACGGCGACGCGGACGAGCCCTGCTT < 41bp 1 0.687415023354789 1 0.501115083694458 experiment 0.625169953290422 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2394994 chr7:2395011 nonsynonymous SNV 0.982 3 38 hm5C_associated_SNPs_46517 0 0 1 0 1 EIF3B chr7:2395055 5'GT 2395055 Upstream 45bp
chr7 2395011 2395011 1 + C G UCS 2395007 + 2394987 2395027 41 AGAACGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAG AGAACGGCGACGCGGACGAGCCCTGCTTCAGCGACCCCGAG < 41bp 1 0.226970684757546 1 0.0942867398262024 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395007 chr7:2395011 nonsynonymous SNV 0.982 3 25 hm5C_associated_SNPs_46518 0 0 1 0 1 EIF3B chr7:2395055 5'GT 2395055 Upstream 45bp
chr7 2395011 2395011 1 + C G UCS 2395008 + 2394988 2395028 41 GAACGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAGG GAACGGCGACGCGGACGAGCCCTGCTTCAGCGACCCCGAGG < 41bp 1 0.284404904785753 1 0.0989010334014893 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395008 chr7:2395011 nonsynonymous SNV 0.982 3 24 hm5C_associated_SNPs_46519 0 0 1 0 1 EIF3B chr7:2395055 5'GT 2395055 Upstream 45bp
chr7 2395011 2395011 1 + C G UCS 2395015 + 2394995 2395035 41 GACGCGGACGAGCCCTCCTTCAGCGACCCCGAGGACTTCGT GACGCGGACGAGCCCTGCTTCAGCGACCCCGAGGACTTCGT < 41bp 1 0.674357585267084 1 0.834522187709808 experiment 0.651284829465831 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395015 chr7:2395011 nonsynonymous SNV 0.982 3 17 hm5C_associated_SNPs_46520 0 0 1 0 1 EIF3B chr7:2395055 5'GT 2395055 Upstream 45bp
chr7 2395011 2395011 1 + C G UCS 2395021 + 2395001 2395041 41 GACGAGCCCTCCTTCAGCGACCCCGAGGACTTCGTGGACGA GACGAGCCCTGCTTCAGCGACCCCGAGGACTTCGTGGACGA < 41bp 1 0.479252965765266 1 0.105677157640457 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395021 chr7:2395011 nonsynonymous SNV 0.982 3 11 hm5C_associated_SNPs_46521 0 0 1 0 1 EIF3B chr7:2395055 5'GT 2395055 Upstream 45bp
chr16 88780614 88780614 1 + C T UCS 88780612 + 88780592 88780632 41 AGGCTGCAGACCCAGTTCCCCTCCACTGTCAGCACTGTGTA AGGCTGCAGACCCAGTTCCCCTTCACTGTCAGCACTGTGTA < 41bp 1 0.40851999512867 1 0.224083065986633 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88780612 chr16:88780614 nonsynonymous SNV 0.909 3 23 hm5C_associated_SNPs_46522 0 0 1 0 2 CTU2 chr16:88780544 3'AG 88780544 Downstream 71bp
chr16 88780614 88780614 1 + C T UCS 88780612 + 88780592 88780632 41 AGGCTGCAGACCCAGTTCCCCTCCACTGTCAGCACTGTGTA AGGCTGCAGACCCAGTTCCCCTTCACTGTCAGCACTGTGTA < 41bp 1 0.40851999512867 1 0.224083065986633 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88780612 chr16:88780614 nonsynonymous SNV 0.909 3 23 hm5C_associated_SNPs_46522 0 0 1 0 2 CTU2 chr16:88780635 5'GT 88780635 Upstream 22bp
chr20 36488358 36488358 1 + C T UCS 36488378 + 36488358 36488398 41 CGGCGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTG TGGCGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTG < 41bp 1 0.39865341393621 1 0.044287383556366 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488378 chr20:36488358 nonsynonymous SNV 0.997 4 1 hm5C_associated_SNPs_46523 0 0 1 6 2 CTNNBL1 chr20:36488301 3'AG 36488301 Downstream 58bp
chr20 36488358 36488358 1 + C T UCS 36488378 + 36488358 36488398 41 CGGCGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTG TGGCGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTG < 41bp 1 0.39865341393621 1 0.044287383556366 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488378 chr20:36488358 nonsynonymous SNV 0.997 4 1 hm5C_associated_SNPs_46523 0 0 1 6 2 CTNNBL1 chr20:36488438 5'GT 36488438 Upstream 81bp
chr20 35862430 35862430 1 + G T UCS 35862428 + 35862408 35862448 41 CTCCCCATCATTCAGTGGATCCGGATTGGTGCCAATGTCTC CTCCCCATCATTCAGTGGATCCTGATTGGTGCCAATGTCTC < 41bp 1 0.186632409214473 1 0.152963221073151 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35862428 chr20:35862430 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_46524 0 0 1 0 2 RPN2 chr20:35862423 3'AG 35862423 Downstream 8bp
chr20 35862430 35862430 1 + G T UCS 35862428 + 35862408 35862448 41 CTCCCCATCATTCAGTGGATCCGGATTGGTGCCAATGTCTC CTCCCCATCATTCAGTGGATCCTGATTGGTGCCAATGTCTC < 41bp 1 0.186632409214473 1 0.152963221073151 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35862428 chr20:35862430 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_46524 0 0 1 0 2 RPN2 chr20:35862498 5'GT 35862498 Upstream 69bp
chr14 73637521 73637521 1 + G A UCS 73637529 + 73637509 73637549 41 ACAATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTT ACAATAGAGAACAGCAGGAGCACAACGACAGACGGAGCCTT < 41bp 1 0.580812006202589 1 0.280585050582886 experiment 0.838375987594822 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637529 chr14:73637521 nonsynonymous SNV 0.410 1 13 hm5C_associated_SNPs_46525 2 0 1 0 1 PSEN1 chr14:73637505 3'AG 73637505 Downstream 17bp
chr14 73637521 73637521 1 + G A UCS 73637531 + 73637511 73637551 41 AATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGG AATAGAGAACAGCAGGAGCACAACGACAGACGGAGCCTTGG < 41bp 1 0.604864981513837 1 0.266449153423309 experiment 0.790270036972326 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637531 chr14:73637521 nonsynonymous SNV 0.410 1 11 hm5C_associated_SNPs_46526 2 0 1 0 1 PSEN1 chr14:73637505 3'AG 73637505 Downstream 17bp
chr9 91083304 91083304 1 + G A UCS 91083287 + 91083267 91083307 41 TTTTTTTTTTTAATCCCCAGCGACATCTCGAATCAGCGATG TTTTTTTTTTTAATCCCCAGCGACATCTCGAATCAGCAATG < 41bp 1 0.339542331642261 1 0.493019551038742 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPIN1 ENSG00000106723 CDS Human protein_coding chr9:91083287 chr9:91083304 nonsynonymous SNV 0.975 2 38 hm5C_associated_SNPs_46527 0 0 1 0 1 SPIN1 chr9:91083287 3'AG 91083287 Downstream 18bp
chr18 8114820 8114820 1 + C T UCS 8114803 + 8114783 8114823 41 ACACAGGAAACCAAAATAGACTGTGTCCAAGTGGCCACAAA ACACAGGAAACCAAAATAGACTGTGTCCAAGTGGCCATAAA < 41bp 1 0.145571226295435 1 0.033341109752655 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:8114803 chr18:8114820 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_46528 0 0 1 0 2 PTPRM chr18:8114789 3'AG 8114789 Downstream 32bp
chr18 8114820 8114820 1 + C T UCS 8114803 + 8114783 8114823 41 ACACAGGAAACCAAAATAGACTGTGTCCAAGTGGCCACAAA ACACAGGAAACCAAAATAGACTGTGTCCAAGTGGCCATAAA < 41bp 1 0.145571226295435 1 0.033341109752655 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:8114803 chr18:8114820 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_46528 0 0 1 0 2 PTPRM chr18:8114825 5'GT 8114825 Upstream 6bp
chr7 106826902 106826902 1 + C T UCS 106826904 + 106826884 106826924 41 TGGCCTTCAACTGTCTGGCACTGTTTTTTGAAAGGTAAAAC TGGCCTTCAACTGTCTGGTACTGTTTTTTGAAAGGTAAAAC < 41bp 1 0.101886319731135 1 0.0514753758907318 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HBP1 ENSG00000105856 CDS Human protein_coding chr7:106826904 chr7:106826902 nonsynonymous SNV 0.969 4 19 hm5C_associated_SNPs_46529 0 0 1 0 2 HBP1 chr7:106826806 3'AG 106826806 Downstream 97bp
chr7 106826902 106826902 1 + C T UCS 106826904 + 106826884 106826924 41 TGGCCTTCAACTGTCTGGCACTGTTTTTTGAAAGGTAAAAC TGGCCTTCAACTGTCTGGTACTGTTTTTTGAAAGGTAAAAC < 41bp 1 0.101886319731135 1 0.0514753758907318 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HBP1 ENSG00000105856 CDS Human protein_coding chr7:106826904 chr7:106826902 nonsynonymous SNV 0.969 4 19 hm5C_associated_SNPs_46529 0 0 1 0 2 HBP1 chr7:106826917 5'GT 106826917 Upstream 16bp
chr11 214328 214328 1 + A G UCS 214325 + 214305 214345 41 TATGGAGCAGCAGCTCTCCTCGGACCCTGACTCGGACCCTG TATGGAGCAGCAGCTCTCCTCGGGCCCTGACTCGGACCCTG < 41bp 1 0.70515986841264 1 0.94624650478363 experiment 0.58968026317472 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:214325 chr11:214328 nonsynonymous SNV 0.987 2 24 hm5C_associated_SNPs_46530 0 0 1 0 1 RIC8A chr11:214230 3'AG 214230 Downstream 99bp
chr6 31594934 31594934 1 + C T UCS 31594939 + 31594919 31594959 41 CTACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC CTACCCCCACCTCACTGGGGCCCCGCCGGGAACTGGGGCCC < 41bp 1 0.297622357432763 1 0.0890676975250244 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594939 chr6:31594934 nonsynonymous SNV 0.997 3 16 hm5C_associated_SNPs_46531 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 42bp
chr6 31594934 31594934 1 + C T UCS 31594940 + 31594920 31594960 41 TACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC TACCCCCACCTCACTGGGGCCCCGCCGGGAACTGGGGCCCC < 41bp 1 0.273964310162999 1 0.12081977725029 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594940 chr6:31594934 nonsynonymous SNV 0.997 3 15 hm5C_associated_SNPs_46532 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 42bp
chr6 31594934 31594934 1 + C T UCS 31594941 + 31594921 31594961 41 ACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC ACCCCCACCTCACTGGGGCCCCGCCGGGAACTGGGGCCCCC < 41bp 1 0.327057123280343 1 0.142692536115646 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594941 chr6:31594934 nonsynonymous SNV 0.997 3 14 hm5C_associated_SNPs_46533 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 42bp
chr6 31594934 31594934 1 + C T UCS 31594942 + 31594922 31594962 41 CCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCC CCCCCACCTCACTGGGGCCCCGCCGGGAACTGGGGCCCCCC < 41bp 1 0.5742496996521 1 0.470107853412628 experiment 0.8515006006958 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594942 chr6:31594934 nonsynonymous SNV 0.997 3 13 hm5C_associated_SNPs_46534 0 0 1 0 1 PRRC2A chr6:31594975 5'GT 31594975 Upstream 42bp
chr14 102455116 102455116 1 + A G UCS 102455097 + 102455077 102455117 41 TGAGAGCTTGGACGCAGGTTCTTCTTGGACAAGCTGAAGAT TGAGAGCTTGGACGCAGGTTCTTCTTGGACAAGCTGAAGGT < 41bp 1 0.0659688823920122 1 0.124078840017319 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102455097 chr14:102455116 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_46535 0 0 1 0 2 DYNC1H1 chr14:102455040 3'AG 102455040 Downstream 77bp
chr14 102455116 102455116 1 + A G UCS 102455097 + 102455077 102455117 41 TGAGAGCTTGGACGCAGGTTCTTCTTGGACAAGCTGAAGAT TGAGAGCTTGGACGCAGGTTCTTCTTGGACAAGCTGAAGGT < 41bp 1 0.0659688823920122 1 0.124078840017319 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102455097 chr14:102455116 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_46535 0 0 1 0 2 DYNC1H1 chr14:102455189 5'GT 102455189 Upstream 74bp
chr1 6692465 6692465 1 + G A UCS 6692470 + 6692450 6692490 41 GGTCCTCCCTGAGGCGGGGGCCGGAGAGGACAGTCCTGGGA GGTCCTCCCTGAGGCAGGGGCCGGAGAGGACAGTCCTGGGA < 41bp 1 0.723988194348298 1 0.531862020492554 experiment 0.552023611303404 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THAP3 ENSG00000041988 CDS Human protein_coding chr1:6692470 chr1:6692465 synonymous SNV . 0 16 hm5C_associated_SNPs_46536 0 0 1 0 3 THAP3 chr1:6692430 3'AG 6692430 Downstream 36bp
chr1 6692465 6692465 1 + G A UCS 6692470 + 6692450 6692490 41 GGTCCTCCCTGAGGCGGGGGCCGGAGAGGACAGTCCTGGGA GGTCCTCCCTGAGGCAGGGGCCGGAGAGGACAGTCCTGGGA < 41bp 1 0.723988194348298 1 0.531862020492554 experiment 0.552023611303404 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THAP3 ENSG00000041988 CDS Human protein_coding chr1:6692470 chr1:6692465 synonymous SNV . 0 16 hm5C_associated_SNPs_46536 0 0 1 0 3 THAP3 chr1:6692451 3'AG 6692451 Downstream 15bp
chr1 6692465 6692465 1 + G A UCS 6692470 + 6692450 6692490 41 GGTCCTCCCTGAGGCGGGGGCCGGAGAGGACAGTCCTGGGA GGTCCTCCCTGAGGCAGGGGCCGGAGAGGACAGTCCTGGGA < 41bp 1 0.723988194348298 1 0.531862020492554 experiment 0.552023611303404 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THAP3 ENSG00000041988 CDS Human protein_coding chr1:6692470 chr1:6692465 synonymous SNV . 0 16 hm5C_associated_SNPs_46536 0 0 1 0 3 THAP3 chr1:6692555 5'GT 6692555 Upstream 91bp
chr7 75933345 75933345 1 + C T UCS 75933337 + 75933317 75933357 41 GACCCCACCCAAGTTTCCTCCTCCCTGTCCCCTGAGGGCAC GACCCCACCCAAGTTTCCTCCTCCCTGTTCCCTGAGGGCAC < 41bp 1 0.478017773154427 1 0.439831525087357 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933337 chr7:75933345 nonsynonymous SNV 0.998 5 29 hm5C_associated_SNPs_46537 0 0 1 0 1 HSPB1 chr7:75933301 3'AG 75933301 Downstream 45bp
chr19 38633333 38633333 1 + C G UCS 38633337 + 38633317 38633357 41 CCACCTACGTGAGATACAAGCCATCCCCAGAAAGGTCAGCC CCACCTACGTGAGATAGAAGCCATCCCCAGAAAGGTCAGCC < 41bp 1 0.00950587969707359 1 0.189718335866928 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38633337 chr19:38633333 stopgain 1.000 0 17 hm5C_associated_SNPs_46538 0 0 0 0 1 SIPA1L3 chr19:38633350 5'GT 38633350 Upstream 18bp
chr12 53343316 53343316 1 - G A UCS 53343306 - 53343286 53343326 41 GACCTGGGGTCCCTTCTTCTCCAAGTGCTCCCGGATTTTGC GACCTGGGGTTCCTTCTTCTCCAAGTGCTCCCGGATTTTGC < 41bp 1 0.431734779264896 1 0.398361653089523 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KRT18 ENSG00000111057 CDS Human other chr12:53343306 chr12:53343316 nonsynonymous SNV 0.999 2 11 hm5C_associated_SNPs_46539 0 0 0 0 1 KRT18 chr12:53343240 5'GT 53343240 Upstream 77bp
chr17 30293184 30293184 1 + G A UCS 30293195 + 30293175 30293215 41 TCATTTGCAGCTTACGTTTACTGGTTTCTTCCACAAAAATG TCATTTGCAACTTACGTTTACTGGTTTCTTCCACAAAAATG < 41bp 1 0.466149004265889 1 0.103860348463058 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SUZ12 ENSG00000178691 CDS Human protein_coding chr17:30293195 chr17:30293184 synonymous SNV . 0 10 hm5C_associated_SNPs_46540 0 0 1 0 2 SUZ12 chr17:30293166 3'AG 30293166 Downstream 19bp
chr17 30293184 30293184 1 + G A UCS 30293195 + 30293175 30293215 41 TCATTTGCAGCTTACGTTTACTGGTTTCTTCCACAAAAATG TCATTTGCAACTTACGTTTACTGGTTTCTTCCACAAAAATG < 41bp 1 0.466149004265889 1 0.103860348463058 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SUZ12 ENSG00000178691 CDS Human protein_coding chr17:30293195 chr17:30293184 synonymous SNV . 0 10 hm5C_associated_SNPs_46540 0 0 1 0 2 SUZ12 chr17:30293215 5'GT 30293215 Upstream 32bp
chr17 47119660 47119660 1 + T C UVM 47119678 + 47119658 47119698 41 CATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGA CACCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGA < 41bp 1 0.119698019351637 1 0.192812591791153 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119678 chr17:47119660 nonsynonymous SNV 0.992 1 3 hm5C_associated_SNPs_46541 0 0 1 0 1 IGF2BP1 chr17:47119604 3'AG 47119604 Downstream 57bp
chr17 47119660 47119660 1 + T C UVM 47119679 + 47119659 47119699 41 ATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGAA ACCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGAA < 41bp 1 0.362146479127785 1 0.258403986692429 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119679 chr17:47119660 nonsynonymous SNV 0.992 1 2 hm5C_associated_SNPs_46542 0 0 1 0 1 IGF2BP1 chr17:47119604 3'AG 47119604 Downstream 57bp
chr15 89694924 89694924 1 + A G UVM 89694926 + 89694906 89694946 41 AGATACATTCCACCGTTGATCTGGGGGAAAAGTGGACACAT AGATACATTCCACCGTTGGTCTGGGGGAAAAGTGGACACAT < 41bp 1 0.780223528269312 1 0.832948088645935 experiment 0.439552943461375 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABHD2 ENSG00000140526 CDS Human protein_coding chr15:89694926 chr15:89694924 nonsynonymous SNV 0.999 2 19 hm5C_associated_SNPs_46543 0 0 1 0 1 ABHD2 chr15:89694908 3'AG 89694908 Downstream 17bp
chr10 118314738 118314738 1 + G A UVM 118314721 + 118314701 118314741 41 GCAGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATT GCAGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCAATT < 41bp 1 0.251205801833685 1 0.0440946221351624 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314721 chr10:118314738 nonsynonymous SNV 0.995 5 38 hm5C_associated_SNPs_46544 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 72bp
chr10 118314738 118314738 1 + G A UVM 118314723 + 118314703 118314743 41 AGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGG AGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCAATTGG < 41bp 1 0.442283713033138 1 0.0472410023212433 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314723 chr10:118314738 nonsynonymous SNV 0.995 5 36 hm5C_associated_SNPs_46545 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 72bp
chr10 118314738 118314738 1 + G A UVM 118314725 + 118314705 118314745 41 AACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGAC AACCTTGCTTTCAGGGCACACCTGAATTAGTCCAATTGGAC < 41bp 1 0.228012000210161 1 0.215187013149261 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314725 chr10:118314738 nonsynonymous SNV 0.995 5 34 hm5C_associated_SNPs_46546 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 72bp
chr10 118314738 118314738 1 + G A UVM 118314726 + 118314706 118314746 41 ACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGACC ACCTTGCTTTCAGGGCACACCTGAATTAGTCCAATTGGACC < 41bp 1 0.696379229982563 1 0.556853175163269 experiment 0.607241540034874 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314726 chr10:118314738 nonsynonymous SNV 0.995 5 33 hm5C_associated_SNPs_46547 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 72bp
chr10 118314738 118314738 1 + G A UVM 118314736 + 118314716 118314756 41 CAGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGC CAGGGCACACCTGAATTAGTCCAATTGGACCCCAGCGATGC < 41bp 1 0.251345158614226 1 0.153278440237045 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314736 chr10:118314738 nonsynonymous SNV 0.995 5 23 hm5C_associated_SNPs_46548 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 72bp
chr10 118314738 118314738 1 + G A UVM 118314737 + 118314717 118314757 41 AGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGCC AGGGCACACCTGAATTAGTCCAATTGGACCCCAGCGATGCC < 41bp 1 0.20123001405627 1 0.106453776359558 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314737 chr10:118314738 nonsynonymous SNV 0.995 5 22 hm5C_associated_SNPs_46549 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 72bp
chr10 118314738 118314738 1 + G A UVM 118314745 + 118314725 118314765 41 CCTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGT CCTGAATTAGTCCAATTGGACCCCAGCGATGCCAAATTTGT < 41bp 1 0.471488013787045 1 0.0601900815963745 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314745 chr10:118314738 nonsynonymous SNV 0.995 5 14 hm5C_associated_SNPs_46550 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 72bp
chr10 118314738 118314738 1 + G A UVM 118314746 + 118314726 118314766 41 CTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTG CTGAATTAGTCCAATTGGACCCCAGCGATGCCAAATTTGTG < 41bp 1 0.11842582013548 1 0.0973059833049774 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314746 chr10:118314738 nonsynonymous SNV 0.995 5 13 hm5C_associated_SNPs_46551 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 72bp
chr10 118314738 118314738 1 + G A UVM 118314747 + 118314727 118314767 41 TGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGG TGAATTAGTCCAATTGGACCCCAGCGATGCCAAATTTGTGG < 41bp 1 0.238743331676251 1 0.208536684513092 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314747 chr10:118314738 nonsynonymous SNV 0.995 5 12 hm5C_associated_SNPs_46552 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 72bp
chr10 118314738 118314738 1 + G A UVM 118314748 + 118314728 118314768 41 GAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGA GAATTAGTCCAATTGGACCCCAGCGATGCCAAATTTGTGGA < 41bp 1 0.672955714840481 1 0.385645151138306 experiment 0.654088570319037 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314748 chr10:118314738 nonsynonymous SNV 0.995 5 11 hm5C_associated_SNPs_46553 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 72bp
chr10 118314738 118314738 1 + G A UVM 118314751 + 118314731 118314771 41 TTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGATGT TTAGTCCAATTGGACCCCAGCGATGCCAAATTTGTGGATGT < 41bp 1 0.278656337133974 1 0.136267691850662 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314751 chr10:118314738 nonsynonymous SNV 0.995 5 8 hm5C_associated_SNPs_46554 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 72bp
chr10 118314738 118314738 1 + G A UVM 118314756 + 118314736 118314776 41 CCGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTC CCAATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTC < 41bp 1 0.33885482475381 1 0.0436730682849884 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314756 chr10:118314738 nonsynonymous SNV 0.995 5 3 hm5C_associated_SNPs_46555 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 72bp
chr10 118314738 118314738 1 + G A UVM 118314757 + 118314737 118314777 41 CGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTCA CAATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTCA < 41bp 1 0.374483427154083 1 0.355504751205444 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314757 chr10:118314738 nonsynonymous SNV 0.995 5 2 hm5C_associated_SNPs_46556 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 72bp
chr17 73695881 73695881 1 + T C UVM 73695888 + 73695868 73695908 41 TTTTCTGAAAGAGTTCGGAACATGTCGCCTGATGAAATCAA TTTTCTGAAAGAGCTCGGAACATGTCGCCTGATGAAATCAA < 41bp 1 0.168838094001429 1 0.130280613899231 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695888 chr17:73695881 nonsynonymous SNV 0.996 1 14 hm5C_associated_SNPs_46557 0 0 1 0 2 SAP30BP chr17:73695863 3'AG 73695863 Downstream 19bp
chr17 73695881 73695881 1 + T C UVM 73695888 + 73695868 73695908 41 TTTTCTGAAAGAGTTCGGAACATGTCGCCTGATGAAATCAA TTTTCTGAAAGAGCTCGGAACATGTCGCCTGATGAAATCAA < 41bp 1 0.168838094001429 1 0.130280613899231 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695888 chr17:73695881 nonsynonymous SNV 0.996 1 14 hm5C_associated_SNPs_46557 0 0 1 0 2 SAP30BP chr17:73695951 5'GT 73695951 Upstream 71bp
chr17 73695881 73695881 1 + T C UVM 73695893 + 73695873 73695913 41 TGAAAGAGTTCGGAACATGTCGCCTGATGAAATCAAGATCC TGAAAGAGCTCGGAACATGTCGCCTGATGAAATCAAGATCC < 41bp 1 0.709885767462226 1 0.426206052303314 experiment 0.580228465075547 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695893 chr17:73695881 nonsynonymous SNV 0.996 1 9 hm5C_associated_SNPs_46558 0 0 1 0 2 SAP30BP chr17:73695863 3'AG 73695863 Downstream 19bp
chr17 73695881 73695881 1 + T C UVM 73695893 + 73695873 73695913 41 TGAAAGAGTTCGGAACATGTCGCCTGATGAAATCAAGATCC TGAAAGAGCTCGGAACATGTCGCCTGATGAAATCAAGATCC < 41bp 1 0.709885767462226 1 0.426206052303314 experiment 0.580228465075547 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695893 chr17:73695881 nonsynonymous SNV 0.996 1 9 hm5C_associated_SNPs_46558 0 0 1 0 2 SAP30BP chr17:73695951 5'GT 73695951 Upstream 71bp
chr17 73695881 73695881 1 + T C UVM 73695896 + 73695876 73695916 41 AAGAGTTCGGAACATGTCGCCTGATGAAATCAAGATCCCGC AAGAGCTCGGAACATGTCGCCTGATGAAATCAAGATCCCGC < 41bp 1 0.328199989048477 1 0.178685754537582 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695896 chr17:73695881 nonsynonymous SNV 0.996 1 6 hm5C_associated_SNPs_46559 0 0 1 0 2 SAP30BP chr17:73695863 3'AG 73695863 Downstream 19bp
chr17 73695881 73695881 1 + T C UVM 73695896 + 73695876 73695916 41 AAGAGTTCGGAACATGTCGCCTGATGAAATCAAGATCCCGC AAGAGCTCGGAACATGTCGCCTGATGAAATCAAGATCCCGC < 41bp 1 0.328199989048477 1 0.178685754537582 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695896 chr17:73695881 nonsynonymous SNV 0.996 1 6 hm5C_associated_SNPs_46559 0 0 1 0 2 SAP30BP chr17:73695951 5'GT 73695951 Upstream 71bp
chr17 71239111 71239111 1 + C G UVM 71239105 + 71239085 71239125 41 ACGATGCTCTTCACAGGATACTTCGTCCTGTGTTGTAGCTG ACGATGCTCTTCACAGGATACTTCGTGCTGTGTTGTAGCTG < 41bp 1 0.426194955412226 1 0.051678866147995 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71239105 chr17:71239111 synonymous SNV . 0 27 hm5C_associated_SNPs_46560 0 0 1 0 2 C17orf80 chr17:71239035 3'AG 71239035 Downstream 77bp
chr17 71239111 71239111 1 + C G UVM 71239105 + 71239085 71239125 41 ACGATGCTCTTCACAGGATACTTCGTCCTGTGTTGTAGCTG ACGATGCTCTTCACAGGATACTTCGTGCTGTGTTGTAGCTG < 41bp 1 0.426194955412226 1 0.051678866147995 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71239105 chr17:71239111 synonymous SNV . 0 27 hm5C_associated_SNPs_46560 0 0 1 0 2 C17orf80 chr17:71239142 5'GT 71239142 Upstream 32bp
chr9 139734309 139734309 1 + G C UVM 139734292 + 139734272 139734312 41 GGGCTGGGGCTGGAGGAGGCCGGACCCAAGGAGAGCAGTGA GGGCTGGGGCTGGAGGAGGCCGGACCCAAGGAGAGCACTGA < 41bp 1 0.246782300019568 1 0.784770727157593 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734292 chr9:139734309 nonsynonymous SNV 0.093 2 38 hm5C_associated_SNPs_46561 0 0 1 0 1 RABL6 chr9:139734317 5'GT 139734317 Upstream 9bp
chr9 139734309 139734309 1 + G C UVM 139734296 + 139734276 139734316 41 TGGGGCTGGAGGAGGCCGGACCCAAGGAGAGCAGTGAGGAA TGGGGCTGGAGGAGGCCGGACCCAAGGAGAGCACTGAGGAA < 41bp 1 0.314673846434312 1 0.179113507270813 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734296 chr9:139734309 nonsynonymous SNV 0.093 2 34 hm5C_associated_SNPs_46562 0 0 1 0 1 RABL6 chr9:139734317 5'GT 139734317 Upstream 9bp
chr9 139734309 139734309 1 + G C UVM 139734298 + 139734278 139734318 41 GGGCTGGAGGAGGCCGGACCCAAGGAGAGCAGTGAGGAAGG GGGCTGGAGGAGGCCGGACCCAAGGAGAGCACTGAGGAAGG < 41bp 1 0.740992812382603 1 0.832200884819031 experiment 0.518014375234793 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734298 chr9:139734309 nonsynonymous SNV 0.093 2 32 hm5C_associated_SNPs_46563 0 0 1 0 1 RABL6 chr9:139734317 5'GT 139734317 Upstream 9bp
chr18 13096255 13096255 1 + G T UVM 13096273 + 13096253 13096293 41 CTGGCCAGCGCATTGCCTCACAGTCACGCCGCAGCATGGAT CTTGCCAGCGCATTGCCTCACAGTCACGCCGCAGCATGGAT < 41bp 1 0.123463033411871 1 0.119163662195206 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13096273 chr18:13096255 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_46565 0 0 1 0 1 CEP192 chr18:13096183 3'AG 13096183 Downstream 73bp
chr11 722155 722155 1 + C T UVM 722139 + 722119 722159 41 CCAGCGCCGCGGAGCTCGTGCACTTCCTCTTCGGGCCTCTG CCAGCGCCGCGGAGCTCGTGCACTTCCTCTTCGGGCTTCTG < 41bp 1 0.0912939064877734 1 0.0163136124610901 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722139 chr11:722155 nonsynonymous SNV 0.995 3 37 hm5C_associated_SNPs_46568 0 0 1 0 2 EPS8L2 chr11:722091 3'AG 722091 Downstream 65bp
chr11 722155 722155 1 + C T UVM 722139 + 722119 722159 41 CCAGCGCCGCGGAGCTCGTGCACTTCCTCTTCGGGCCTCTG CCAGCGCCGCGGAGCTCGTGCACTTCCTCTTCGGGCTTCTG < 41bp 1 0.0912939064877734 1 0.0163136124610901 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722139 chr11:722155 nonsynonymous SNV 0.995 3 37 hm5C_associated_SNPs_46568 0 0 1 0 2 EPS8L2 chr11:722165 5'GT 722165 Upstream 11bp
chr11 722155 722155 1 + C T UVM 722163 + 722143 722183 41 TCCTCTTCGGGCCTCTGGACCTGGTGCCTGGGGCCGGGCGG TCCTCTTCGGGCTTCTGGACCTGGTGCCTGGGGCCGGGCGG < 41bp 1 0.741920452698355 1 0.239225149154663 experiment 0.516159094603291 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722163 chr11:722155 nonsynonymous SNV 0.995 3 13 hm5C_associated_SNPs_46569 0 0 1 0 2 EPS8L2 chr11:722091 3'AG 722091 Downstream 65bp
chr11 722155 722155 1 + C T UVM 722163 + 722143 722183 41 TCCTCTTCGGGCCTCTGGACCTGGTGCCTGGGGCCGGGCGG TCCTCTTCGGGCTTCTGGACCTGGTGCCTGGGGCCGGGCGG < 41bp 1 0.741920452698355 1 0.239225149154663 experiment 0.516159094603291 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722163 chr11:722155 nonsynonymous SNV 0.995 3 13 hm5C_associated_SNPs_46569 0 0 1 0 2 EPS8L2 chr11:722165 5'GT 722165 Upstream 11bp
chr13 101020822 101020822 1 + G A UVM 101020818 + 101020798 101020838 41 AGTAGCATCAAACAATGGGTCAGTGTTCTCGGTGAGTTTTC AGTAGCATCAAACAATGGGTCAGTATTCTCGGTGAGTTTTC < 41bp 1 0.282855563638912 1 0.246316522359848 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCCA ENSG00000175198 CDS Human protein_coding chr13:101020818 chr13:101020822 synonymous SNV . 0 25 hm5C_associated_SNPs_46571 0 0 0 0 2 PCCA chr13:101020726 3'AG 101020726 Downstream 97bp
chr13 101020822 101020822 1 + G A UVM 101020818 + 101020798 101020838 41 AGTAGCATCAAACAATGGGTCAGTGTTCTCGGTGAGTTTTC AGTAGCATCAAACAATGGGTCAGTATTCTCGGTGAGTTTTC < 41bp 1 0.282855563638912 1 0.246316522359848 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCCA ENSG00000175198 CDS Human protein_coding chr13:101020818 chr13:101020822 synonymous SNV . 0 25 hm5C_associated_SNPs_46571 0 0 0 0 2 PCCA chr13:101020828 5'GT 101020828 Upstream 7bp
chr6 31593371 31593371 1 + G A UVM 31593351 + 31593331 31593371 41 GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCG GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCA < 41bp 1 0.360454838219662 1 0.0941270291805267 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593351 chr6:31593371 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_46598 0 0 1 1 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 18bp
chr6 31593371 31593371 1 + G A UVM 31593352 + 31593332 31593372 41 CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGG CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCAG < 41bp 1 0.360329432608389 1 0.140684545040131 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593352 chr6:31593371 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_46599 0 0 1 1 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 18bp
chr6 31593371 31593371 1 + G A UVM 31593353 + 31593333 31593373 41 TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGGA TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCAGA < 41bp 1 0.288224352695684 1 0.268606781959534 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593353 chr6:31593371 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_46600 0 0 1 1 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 18bp
chr6 31593371 31593371 1 + G A UVM 31593388 + 31593368 31593408 41 CGCGGAATGATGCCGCCTTTCGTGAGTCTTGGTGTCTTGTC CGCAGAATGATGCCGCCTTTCGTGAGTCTTGGTGTCTTGTC < 41bp 1 0.646796459124704 1 0.727220773696899 experiment 0.706407081750592 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593388 chr6:31593371 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_46601 0 0 1 1 1 PRRC2A chr6:31593388 5'GT 31593388 Upstream 18bp
chr22 50861960 50861960 1 + C T UVM 50861963 + 50861943 50861983 41 CCCGTCTGCATGGCGCCCGCCTCATGGCAGCACTGCTGCAC CCCGTCTGCATGGCGCCTGCCTCATGGCAGCACTGCTGCAC < 41bp 1 0.572825996801906 1 0.165966391563416 experiment 0.854348006396187 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50861963 chr22:50861960 nonsynonymous SNV 0.999 4 18 hm5C_associated_SNPs_46604 0 0 1 0 2 PPP6R2 chr22:50861891 3'AG 50861891 Downstream 70bp
chr22 50861960 50861960 1 + C T UVM 50861963 + 50861943 50861983 41 CCCGTCTGCATGGCGCCCGCCTCATGGCAGCACTGCTGCAC CCCGTCTGCATGGCGCCTGCCTCATGGCAGCACTGCTGCAC < 41bp 1 0.572825996801906 1 0.165966391563416 experiment 0.854348006396187 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50861963 chr22:50861960 nonsynonymous SNV 0.999 4 18 hm5C_associated_SNPs_46604 0 0 1 0 2 PPP6R2 chr22:50862043 5'GT 50862043 Upstream 84bp
chr11 61106798 61106798 1 + G A UVM 61106796 + 61106776 61106816 41 GGCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCGGT GGCCTGGCCCGGGAGCAGGCCCAGGCTGAAGGCATCCCGGT < 41bp 1 0.502772560837722 1 0.323551893234253 experiment 0.994454878324556 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61106796 chr11:61106798 nonsynonymous SNV 0.571 0 23 hm5C_associated_SNPs_46605 0 0 1 0 1 TKFC chr11:61106726 3'AG 61106726 Downstream 73bp
chr11 61106798 61106798 1 + G A UVM 61106797 + 61106777 61106817 41 GCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCGGTG GCCTGGCCCGGGAGCAGGCCCAGGCTGAAGGCATCCCGGTG < 41bp 1 0.752568581116322 1 0.775952994823456 experiment 0.494862837767355 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61106797 chr11:61106798 nonsynonymous SNV 0.571 0 22 hm5C_associated_SNPs_46606 0 0 1 0 1 TKFC chr11:61106726 3'AG 61106726 Downstream 73bp
chr7 92987688 92987688 1 + T A LAML 92987685 + 92987665 92987705 41 GTTTGCCTGGGATCCCATATCAATAAGAAAGCAAGACAAAA GTTTGCCTGGGATCCCATATCAAAAAGAAAGCAAGACAAAA < 41bp 1 0.685062026746869 1 0.673618912696838 experiment 0.629875946506262 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS50 ENSG00000004766 CDS Human protein_coding chr7:92987685 chr7:92987688 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_46607 0 0 0 1 1 VPS50 chr7:92987629 3'AG 92987629 Downstream 60bp
chr1 6505934 6505934 1 + A G LAML 6505928 + 6505908 6505948 41 GCCTCCTGTAGGACCACAGGCAGCTGACATCTACATGCAGA GCCTCCTGTAGGACCACAGGCAGCTGGCATCTACATGCAGA < 41bp 1 0.322986975375819 1 0.463083148002625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ESPN ENSG00000187017 CDS Human protein_coding chr1:6505928 chr1:6505934 nonsynonymous SNV 0.460 2 27 hm5C_associated_SNPs_46608 0 0 1 0 1 ESPN chr1:6505995 5'GT 6505995 Upstream 62bp
chr1 23236972 23236972 1 + G A LAML 23236971 + 23236951 23236991 41 TGGACTGTTGGCAGAAGGACCGCAACCACCGGCCCAAGTTC TGGACTGTTGGCAGAAGGACCACAACCACCGGCCCAAGTTC < 41bp 1 0.458435660251673 1 0.282206356525421 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23236971 chr1:23236972 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_46609 0 0 0 0 2 EPHB2 chr1:23236875 3'AG 23236875 Downstream 98bp
chr1 23236972 23236972 1 + G A LAML 23236971 + 23236951 23236991 41 TGGACTGTTGGCAGAAGGACCGCAACCACCGGCCCAAGTTC TGGACTGTTGGCAGAAGGACCACAACCACCGGCCCAAGTTC < 41bp 1 0.458435660251673 1 0.282206356525421 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23236971 chr1:23236972 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_46609 0 0 0 0 2 EPHB2 chr1:23237068 5'GT 23237068 Upstream 97bp
chr11 118267094 118267094 1 + T A LAML 118267077 + 118267057 118267097 41 CCCCTCACCATGGACCAGATCCGGCCAAACACAGAACTAAA CCCCTCACCATGGACCAGATCCGGCCAAACACAGAACAAAA < 41bp 1 0.239748516706805 1 0.181405365467072 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UBE4A ENSG00000110344 CDS Human protein_coding chr11:118267077 chr11:118267094 nonsynonymous SNV 0.999 4 38 hm5C_associated_SNPs_46610 0 0 1 0 1 UBE4A chr11:118267029 3'AG 118267029 Downstream 66bp
chr12 124181004 124181004 1 + G T LAML 124181019 + 124180999 124181039 41 CAACAGGATGAATAATGTCACGACTTTACATCTTTGGCAAT CAACATGATGAATAATGTCACGACTTTACATCTTTGGCAAT < 41bp 1 0.26619775250029 1 0.12005603313446 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124181019 chr12:124181004 nonsynonymous SNV 0.002 1 6 hm5C_associated_SNPs_46611 0 0 1 0 2 TCTN2 chr12:124180962 3'AG 124180962 Downstream 43bp
chr12 124181004 124181004 1 + G T LAML 124181019 + 124180999 124181039 41 CAACAGGATGAATAATGTCACGACTTTACATCTTTGGCAAT CAACATGATGAATAATGTCACGACTTTACATCTTTGGCAAT < 41bp 1 0.26619775250029 1 0.12005603313446 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124181019 chr12:124181004 nonsynonymous SNV 0.002 1 6 hm5C_associated_SNPs_46611 0 0 1 0 2 TCTN2 chr12:124181042 5'GT 124181042 Upstream 39bp
chr22 22025318 22025318 1 + G A LAML 22025316 + 22025296 22025336 41 CAGCCCTTTGTCTACCCAGTCTGCACTCCCGATGGCATCGT CAGCCCTTTGTCTACCCAGTCTACACTCCCGATGGCATCGT < 41bp 1 0.408376865011113 1 0.239805579185486 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22025316 chr22:22025318 nonsynonymous SNV 0.974 4 23 hm5C_associated_SNPs_46612 0 0 1 0 2 PPIL2 chr22:22025286 3'AG 22025286 Downstream 33bp
chr22 22025318 22025318 1 + G A LAML 22025316 + 22025296 22025336 41 CAGCCCTTTGTCTACCCAGTCTGCACTCCCGATGGCATCGT CAGCCCTTTGTCTACCCAGTCTACACTCCCGATGGCATCGT < 41bp 1 0.408376865011113 1 0.239805579185486 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22025316 chr22:22025318 nonsynonymous SNV 0.974 4 23 hm5C_associated_SNPs_46612 0 0 1 0 2 PPIL2 chr22:22025348 5'GT 22025348 Upstream 31bp
chr5 54641006 54641006 1 + C T LAML 54640986 + 54640966 54641006 41 TCGAGATGCAGGTGATTTGGCCAAAGGAGACCAGAAAGGGC TCGAGATGCAGGTGATTTGGCCAAAGGAGACCAGAAAGGGT < 41bp 1 0.474708368598779 1 0.681329965591431 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54640986 chr5:54641006 nonsynonymous SNV 0.999 4 41 hm5C_associated_SNPs_46615 0 0 1 0 1 SKIV2L2 chr5:54641024 5'GT 54641024 Upstream 19bp
chr5 54641006 54641006 1 + C T LAML 54640997 + 54640977 54641017 41 GTGATTTGGCCAAAGGAGACCAGAAAGGGCGGAAAGGAGGA GTGATTTGGCCAAAGGAGACCAGAAAGGGTGGAAAGGAGGA < 41bp 1 0.634563070293425 1 0.423268288373947 experiment 0.730873859413151 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54640997 chr5:54641006 nonsynonymous SNV 0.999 4 30 hm5C_associated_SNPs_46616 0 0 1 0 1 SKIV2L2 chr5:54641024 5'GT 54641024 Upstream 19bp
chr20 36488360 36488360 1 + G A LAML 36488378 + 36488358 36488398 41 CGGCGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTG CGACGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTG < 41bp 1 0.373318731800433 1 0.057070791721344 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488378 chr20:36488360 synonymous SNV . 0 3 hm5C_associated_SNPs_46617 0 0 0 0 2 CTNNBL1 chr20:36488301 3'AG 36488301 Downstream 60bp
chr20 36488360 36488360 1 + G A LAML 36488378 + 36488358 36488398 41 CGGCGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTG CGACGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTG < 41bp 1 0.373318731800433 1 0.057070791721344 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488378 chr20:36488360 synonymous SNV . 0 3 hm5C_associated_SNPs_46617 0 0 0 0 2 CTNNBL1 chr20:36488438 5'GT 36488438 Upstream 79bp
chr17 48631738 48631738 1 + G A LAML 48631727 + 48631707 48631747 41 TGTGTGTGCCTATTGACCGCCTTTTCCGAGCGCATGCGTCG TGTGTGTGCCTATTGACCGCCTTTTCCGAGCACATGCGTCG < 41bp 1 0.0412409789439358 1 0.02955362200737 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPATA20 ENSG00000006282 CDS Human protein_coding chr17:48631727 chr17:48631738 nonsynonymous SNV 0.997 4 32 hm5C_associated_SNPs_46618 0 0 1 0 1 SPATA20 chr17:48631811 5'GT 48631811 Upstream 74bp
chr14 23239047 23239047 1 + C T LAML 23239030 + 23239010 23239050 41 TGCCCGCTGCCTGATTTTTCCTCTCATCGTGACGGGCCAGC TGCCCGCTGCCTGATTTTTCCTCTCATCGTGACGGGCTAGC < 41bp 1 0.278367741641664 1 0.0430866479873657 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXA1L ENSG00000155463 CDS Human protein_coding chr14:23239030 chr14:23239047 stopgain 1.000 1 38 hm5C_associated_SNPs_46619 0 0 1 0 1 OXA1L chr14:23239000 3'AG 23239000 Downstream 48bp
chr19 49130965 49130965 1 + G A LAML 49130953 + 49130933 49130973 41 TAACCTCTCTCCACAGAGATCACCCCTGACCTGCTACCTCG TAACCTCTCTCCACAGAGATCACCCCTGACCTACTACCTCG < 41bp 1 0.26597667380567 1 0.0370282828807831 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPHK2 ENSG00000063176 CDS Human protein_coding chr19:49130953 chr19:49130965 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_46621 0 0 0 0 1 SPHK2 chr19:49130949 3'AG 49130949 Downstream 17bp
chr8 95885675 95885675 1 + G C LAML 95885659 + 95885639 95885679 41 CCAGGCAGGAGCTGTGTGTTCTGACTTCTTTAACAAGGCTG CCAGGCAGGAGCTGTGTGTTCTGACTTCTTTAACAACGCTG < 41bp 1 0.619412299902896 1 0.164577424526215 experiment 0.761175400194208 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INTS8 ENSG00000164941 CDS Human protein_coding chr8:95885659 chr8:95885675 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_46622 0 0 1 0 2 INTS8 chr8:95885602 3'AG 95885602 Downstream 74bp
chr8 95885675 95885675 1 + G C LAML 95885659 + 95885639 95885679 41 CCAGGCAGGAGCTGTGTGTTCTGACTTCTTTAACAAGGCTG CCAGGCAGGAGCTGTGTGTTCTGACTTCTTTAACAACGCTG < 41bp 1 0.619412299902896 1 0.164577424526215 experiment 0.761175400194208 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INTS8 ENSG00000164941 CDS Human protein_coding chr8:95885659 chr8:95885675 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_46622 0 0 1 0 2 INTS8 chr8:95885705 5'GT 95885705 Upstream 31bp
chr18 61648989 61648989 1 + C T LAML 61648969 + 61648949 61648989 41 TTGCAGGACTTTAAAGAATACTGTCAGAAGTTCTATCAGGC TTGCAGGACTTTAAAGAATACTGTCAGAAGTTCTATCAGGT < 41bp 1 0.158383960584371 1 0.130263656377792 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61648969 chr18:61648989 nonsynonymous SNV 0.633 4 41 hm5C_associated_SNPs_46623 0 0 0 0 1 SERPINB8 chr18:61648955 3'AG 61648955 Downstream 35bp
chr11 61507974 61507974 1 + G A LAML 61507955 + 61507935 61507975 41 CTGCTGTGAGCAGGAGGAGCCCACATACTTTGCCATCTGGG CTGCTGTGAGCAGGAGGAGCCCACATACTTTGCCATCTGAG < 41bp 1 0.112009620910156 1 0.289801836013794 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507955 chr11:61507974 stopgain 1.000 1 40 hm5C_associated_SNPs_46624 0 0 1 0 2 DAGLA chr11:61507935 3'AG 61507935 Downstream 40bp
chr11 61507974 61507974 1 + G A LAML 61507955 + 61507935 61507975 41 CTGCTGTGAGCAGGAGGAGCCCACATACTTTGCCATCTGGG CTGCTGTGAGCAGGAGGAGCCCACATACTTTGCCATCTGAG < 41bp 1 0.112009620910156 1 0.289801836013794 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507955 chr11:61507974 stopgain 1.000 1 40 hm5C_associated_SNPs_46624 0 0 1 0 2 DAGLA chr11:61508064 5'GT 61508064 Upstream 91bp
chr11 61507974 61507974 1 + G A LAML 61507980 + 61507960 61508000 41 TACTTTGCCATCTGGGGCGACAACAAGGCCTTCAATGAGGT TACTTTGCCATCTGAGGCGACAACAAGGCCTTCAATGAGGT < 41bp 1 0.176603694020955 1 0.198753267526627 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507980 chr11:61507974 stopgain 1.000 1 15 hm5C_associated_SNPs_46625 0 0 1 0 2 DAGLA chr11:61507935 3'AG 61507935 Downstream 40bp
chr11 61507974 61507974 1 + G A LAML 61507980 + 61507960 61508000 41 TACTTTGCCATCTGGGGCGACAACAAGGCCTTCAATGAGGT TACTTTGCCATCTGAGGCGACAACAAGGCCTTCAATGAGGT < 41bp 1 0.176603694020955 1 0.198753267526627 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507980 chr11:61507974 stopgain 1.000 1 15 hm5C_associated_SNPs_46625 0 0 1 0 2 DAGLA chr11:61508064 5'GT 61508064 Upstream 91bp
chr16 67914545 67914545 1 + G A LAML 67914550 + 67914530 67914570 41 CCCCTAGCCGCACTCGTTCCCCTGATGTCATCTCCTCAGCT CCCCTAGCCGCACTCATTCCCCTGATGTCATCTCCTCAGCT < 41bp 1 0.420524747591387 1 0.315146952867508 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914550 chr16:67914545 nonsynonymous SNV 0.854 4 16 hm5C_associated_SNPs_46626 0 0 1 0 1 EDC4 chr16:67914460 3'AG 67914460 Downstream 86bp
chr12 57970117 57970117 1 + G T LAML 57970126 + 57970106 57970146 41 GCCCGGCTCCGGGACGAGATCAACGAGAAGCAGAAGACCAT GCCCGGCTCCGTGACGAGATCAACGAGAAGCAGAAGACCAT < 41bp 1 0.560324203403919 1 0.328804224729538 experiment 0.879351593192162 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF5A ENSG00000155980 CDS Human protein_coding chr12:57970126 chr12:57970117 synonymous SNV . 0 12 hm5C_associated_SNPs_46627 0 0 1 0 1 KIF5A chr12:57970052 3'AG 57970052 Downstream 66bp
chr6 47577008 47577008 1 + G A LAML 47577024 + 47577004 47577044 41 TGTTGTGCATTGTAGAAGCACTGAAAAAGGATCACGGGTAA TGTTATGCATTGTAGAAGCACTGAAAAAGGATCACGGGTAA < 41bp 1 0.643669335132884 1 0.387636005878448 experiment 0.712661329734233 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47577024 chr6:47577008 synonymous SNV . 0 5 hm5C_associated_SNPs_46628 0 0 1 0 1 CD2AP chr6:47577040 5'GT 47577040 Upstream 33bp
chr3 158015829 158015829 1 + G T LAML 158015833 + 158015813 158015853 41 ACTCTTCTATTTTAGGGAATCTGGAAACATCAAAGCTGGAT ACTCTTCTATTTTAGGTAATCTGGAAACATCAAAGCTGGAT < 41bp 1 0.761846457224919 1 0.729074418544769 experiment 0.476307085550161 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RSRC1 ENSG00000174891 CDS Human protein_coding chr3:158015833 chr3:158015829 stopgain 1.000 1 17 hm5C_associated_SNPs_46631 0 0 1 0 2 RSRC1 chr3:158015828 3'AG 158015828 Downstream 2bp
chr3 158015829 158015829 1 + G T LAML 158015833 + 158015813 158015853 41 ACTCTTCTATTTTAGGGAATCTGGAAACATCAAAGCTGGAT ACTCTTCTATTTTAGGTAATCTGGAAACATCAAAGCTGGAT < 41bp 1 0.761846457224919 1 0.729074418544769 experiment 0.476307085550161 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RSRC1 ENSG00000174891 CDS Human protein_coding chr3:158015833 chr3:158015829 stopgain 1.000 1 17 hm5C_associated_SNPs_46631 0 0 1 0 2 RSRC1 chr3:158015864 5'GT 158015864 Upstream 36bp
chr17 43318570 43318570 1 + G A LAML 43318550 + 43318530 43318570 41 CCATGGCCAAGATTGCAGAACTGGAAAAACAGCTAAGCCAG CCATGGCCAAGATTGCAGAACTGGAAAAACAGCTAAGCCAA < 41bp 1 0.791142126262166 1 0.466464638710022 experiment 0.417715747475667 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43318550 chr17:43318570 synonymous SNV . 0 41 hm5C_associated_SNPs_46632 0 0 0 0 1 FMNL1 chr17:43318597 5'GT 43318597 Upstream 28bp
chr2 173429359 173429359 1 + T C LAML 173429352 + 173429332 173429372 41 CTGTCACCAGCCAGAATGTTCAGTACTTTTTGGATCGATTC CTGTCACCAGCCAGAATGTTCAGTACTCTTTGGATCGATTC < 41bp 1 0.497123596352056 1 0.0410113036632538 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PDK1 ENSG00000152256 CDS Human protein_coding chr2:173429352 chr2:173429359 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_46633 0 0 0 0 1 PDK1 chr2:173429415 5'GT 173429415 Upstream 57bp
chr12 57892308 57892308 1 + G A LAML 57892311 + 57892291 57892331 41 GGACTAACCCCCCAGGAGATCTGCGACAAGTACCACATCAT GGACTAACCCCCCAGGAAATCTGCGACAAGTACCACATCAT < 41bp 1 0.717961457967385 1 0.651108384132385 experiment 0.564077084065231 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARS ENSG00000166986 CDS Human protein_coding chr12:57892311 chr12:57892308 synonymous SNV . 0 18 hm5C_associated_SNPs_46634 0 0 1 0 1 MARS chr12:57892406 5'GT 57892406 Upstream 99bp
chr1 32620260 32620260 1 + G A LAML 32620246 + 32620226 32620266 41 GAAGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGA GAAGAGCTATAAGAACAATGCTCTAAACCCTGAAAAAATGA < 41bp 1 0.322347743055168 1 0.21581044793129 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620246 chr1:32620260 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_46635 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 72bp
chr1 32620260 32620260 1 + G A LAML 32620246 + 32620226 32620266 41 GAAGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGA GAAGAGCTATAAGAACAATGCTCTAAACCCTGAAAAAATGA < 41bp 1 0.322347743055168 1 0.21581044793129 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620246 chr1:32620260 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_46635 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 63bp
chr1 32620260 32620260 1 + G A LAML 32620248 + 32620228 32620268 41 AGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGAGA AGAGCTATAAGAACAATGCTCTAAACCCTGAAAAAATGAGA < 41bp 1 0.266574077449196 1 0.185256481170654 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620248 chr1:32620260 nonsynonymous SNV 0.999 4 33 hm5C_associated_SNPs_46636 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 72bp
chr1 32620260 32620260 1 + G A LAML 32620248 + 32620228 32620268 41 AGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGAGA AGAGCTATAAGAACAATGCTCTAAACCCTGAAAAAATGAGA < 41bp 1 0.266574077449196 1 0.185256481170654 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620248 chr1:32620260 nonsynonymous SNV 0.999 4 33 hm5C_associated_SNPs_46636 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 63bp
chr1 32620260 32620260 1 + G A LAML 32620253 + 32620233 32620273 41 TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAG TATAAGAACAATGCTCTAAACCCTGAAAAAATGAGACGAAG < 41bp 1 0.189615135957369 1 0.261202394962311 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620253 chr1:32620260 nonsynonymous SNV 0.999 4 28 hm5C_associated_SNPs_46637 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 72bp
chr1 32620260 32620260 1 + G A LAML 32620253 + 32620233 32620273 41 TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAG TATAAGAACAATGCTCTAAACCCTGAAAAAATGAGACGAAG < 41bp 1 0.189615135957369 1 0.261202394962311 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620253 chr1:32620260 nonsynonymous SNV 0.999 4 28 hm5C_associated_SNPs_46637 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 63bp
chr1 32620260 32620260 1 + G A LAML 32620254 + 32620234 32620274 41 ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAGA ATAAGAACAATGCTCTAAACCCTGAAAAAATGAGACGAAGA < 41bp 1 0.275793984772246 1 0.467492878437042 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620254 chr1:32620260 nonsynonymous SNV 0.999 4 27 hm5C_associated_SNPs_46638 0 0 1 0 2 KPNA6 chr1:32620189 3'AG 32620189 Downstream 72bp
chr1 32620260 32620260 1 + G A LAML 32620254 + 32620234 32620274 41 ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAGA ATAAGAACAATGCTCTAAACCCTGAAAAAATGAGACGAAGA < 41bp 1 0.275793984772246 1 0.467492878437042 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620254 chr1:32620260 nonsynonymous SNV 0.999 4 27 hm5C_associated_SNPs_46638 0 0 1 0 2 KPNA6 chr1:32620322 5'GT 32620322 Upstream 63bp
chr5 82868289 82868289 1 + G A LAML 82868273 + 82868253 82868293 41 CCCAACCAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTG CCCAACCAGCCAGACAGCTTCTTTTCTGCTGGAGAAAACTG < 41bp 1 0.0258622156997221 1 0.0271070003509521 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82868273 chr5:82868289 nonsynonymous SNV 0.996 3 37 hm5C_associated_SNPs_46640 0 0 1 0 2 VCAN chr5:82868235 3'AG 82868235 Downstream 55bp
chr5 82868289 82868289 1 + G A LAML 82868273 + 82868253 82868293 41 CCCAACCAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTG CCCAACCAGCCAGACAGCTTCTTTTCTGCTGGAGAAAACTG < 41bp 1 0.0258622156997221 1 0.0271070003509521 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82868273 chr5:82868289 nonsynonymous SNV 0.996 3 37 hm5C_associated_SNPs_46640 0 0 1 0 2 VCAN chr5:82868379 5'GT 82868379 Upstream 91bp
chr5 82868289 82868289 1 + G A LAML 82868278 + 82868258 82868298 41 CCAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTGTGTTG CCAGCCAGACAGCTTCTTTTCTGCTGGAGAAAACTGTGTTG < 41bp 1 0.52264342020905 1 0.462535679340363 experiment 0.9547131595819 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82868278 chr5:82868289 nonsynonymous SNV 0.996 3 32 hm5C_associated_SNPs_46641 0 0 1 0 2 VCAN chr5:82868235 3'AG 82868235 Downstream 55bp
chr5 82868289 82868289 1 + G A LAML 82868278 + 82868258 82868298 41 CCAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTGTGTTG CCAGCCAGACAGCTTCTTTTCTGCTGGAGAAAACTGTGTTG < 41bp 1 0.52264342020905 1 0.462535679340363 experiment 0.9547131595819 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82868278 chr5:82868289 nonsynonymous SNV 0.996 3 32 hm5C_associated_SNPs_46641 0 0 1 0 2 VCAN chr5:82868379 5'GT 82868379 Upstream 91bp
chrX 57405182 57405182 1 + C A LAML 57405181 + 57405161 57405201 41 CGTTATGCTGAAGACCTGGCCCCCATGTTGAAGGTCATGGC CGTTATGCTGAAGACCTGGCCACCATGTTGAAGGTCATGGC < 41bp 1 0.763583014591385 1 0.505443572998047 experiment 0.47283397081723 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57405181 chrX:57405182 nonsynonymous SNV 0.751 1 22 hm5C_associated_SNPs_46642 0 0 0 0 2 FAAH2 chrX:57405084 3'AG 57405084 Downstream 99bp
chrX 57405182 57405182 1 + C A LAML 57405181 + 57405161 57405201 41 CGTTATGCTGAAGACCTGGCCCCCATGTTGAAGGTCATGGC CGTTATGCTGAAGACCTGGCCACCATGTTGAAGGTCATGGC < 41bp 1 0.763583014591385 1 0.505443572998047 experiment 0.47283397081723 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57405181 chrX:57405182 nonsynonymous SNV 0.751 1 22 hm5C_associated_SNPs_46642 0 0 0 0 2 FAAH2 chrX:57405219 5'GT 57405219 Upstream 38bp
chr9 131559367 131559367 1 + G A LAML 131559385 + 131559365 131559405 41 AGGGCCACTGACTACCCTTGCCTCCTCATCCTGGACCCCCA AGAGCCACTGACTACCCTTGCCTCCTCATCCTGGACCCCCA < 41bp 1 0.0499212403283682 1 0.054042637348175 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D13 ENSG00000107021 CDS Human protein_coding chr9:131559385 chr9:131559367 synonymous SNV . 0 3 hm5C_associated_SNPs_46643 0 0 1 0 1 TBC1D13 chr9:131559334 3'AG 131559334 Downstream 34bp
chrX 49853397 49853397 1 + A T LAML 49853386 + 49853366 49853406 41 CCTCTTTATCCCTAGCATGGCTGTTGGTGCTATAGCAGGTC CCTCTTTATCCCTAGCATGGCTGTTGGTGCTTTAGCAGGTC < 41bp 1 0.184766040490953 1 0.0932470560073853 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLCN5 ENSG00000171365 CDS Human protein_coding chrX:49853386 chrX:49853397 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_46646 0 0 0 0 1 CLCN5 chrX:49853355 3'AG 49853355 Downstream 43bp
chr3 132394124 132394124 1 + A T LAML 132394139 + 132394119 132394159 41 TTTTTACCTTGGATACAATGCAATGCAGGATTTTTTTCCTA TTTTTTCCTTGGATACAATGCAATGCAGGATTTTTTTCCTA < 41bp 1 0.313946380688994 1 0.157161056995392 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UBA5 ENSG00000081307 CDS Human protein_coding chr3:132394139 chr3:132394124 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_46648 0 0 1 0 1 UBA5 chr3:132394092 3'AG 132394092 Downstream 33bp
chr10 73562786 73562786 1 + A G LAML 73562773 + 73562753 73562793 41 GGTCATCACCATGATGGCCACTGACCAGGATGAAGGTCCCA GGTCATCACCATGATGGCCACTGACCAGGATGAGGGTCCCA < 41bp 1 0.102847466844448 1 0.0735977590084076 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH23 ENSG00000107736 CDS Human protein_coding chr10:73562773 chr10:73562786 synonymous SNV . 0 34 hm5C_associated_SNPs_46649 0 0 0 0 1 CDH23 chr10:73562832 5'GT 73562832 Upstream 47bp
chr19 13930251 13930251 1 + G A LAML 13930238 + 13930218 13930258 41 CCCATGCACACCTGTGCCCGCTACCTGTTCACCGCACTGCT CCCATGCACACCTGTGCCCGCTACCTGTTCACCACACTGCT < 41bp 1 0.108201115561226 1 0.0762214660644531 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13930238 chr19:13930251 nonsynonymous SNV 0.889 0 34 hm5C_associated_SNPs_46651 0 0 1 0 2 ZSWIM4 chr19:13930171 3'AG 13930171 Downstream 81bp
chr19 13930251 13930251 1 + G A LAML 13930238 + 13930218 13930258 41 CCCATGCACACCTGTGCCCGCTACCTGTTCACCGCACTGCT CCCATGCACACCTGTGCCCGCTACCTGTTCACCACACTGCT < 41bp 1 0.108201115561226 1 0.0762214660644531 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13930238 chr19:13930251 nonsynonymous SNV 0.889 0 34 hm5C_associated_SNPs_46651 0 0 1 0 2 ZSWIM4 chr19:13930306 5'GT 13930306 Upstream 56bp
chr2 27353481 27353481 1 + G T LAML 27353494 + 27353474 27353514 41 CTTCCTGGAAGGGCTGCTCCCGTGGCAGCACTGGTACATGA CTTCCTGTAAGGGCTGCTCCCGTGGCAGCACTGGTACATGA < 41bp 1 0.794905093258318 1 0.385928452014923 experiment 0.410189813483364 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ABHD1 ENSG00000143994 CDS Human protein_coding chr2:27353494 chr2:27353481 stopgain 0.994 1 8 hm5C_associated_SNPs_46653 0 0 0 0 1 ABHD1 chr2:27353401 3'AG 27353401 Downstream 81bp
chr22 38168624 38168624 1 + C T LAML 38168604 + 38168584 38168624 41 TCATACCTGCCTCCTGCCCCCCAGGACAAGCGCTTCACCTC TCATACCTGCCTCCTGCCCCCCAGGACAAGCGCTTCACCTT < 41bp 1 0.144386701894157 1 0.263983815908432 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIOBP ENSG00000100106 CDS Human protein_coding chr22:38168604 chr22:38168624 nonsynonymous SNV 0.975 3 41 hm5C_associated_SNPs_46654 0 0 1 0 1 TRIOBP chr22:38168608 3'AG 38168608 Downstream 17bp
chr22 38168624 38168624 1 + C T LAML 38168605 + 38168585 38168625 41 CATACCTGCCTCCTGCCCCCCAGGACAAGCGCTTCACCTCG CATACCTGCCTCCTGCCCCCCAGGACAAGCGCTTCACCTTG < 41bp 1 0.483333145955962 1 0.851590991020203 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIOBP ENSG00000100106 CDS Human protein_coding chr22:38168605 chr22:38168624 nonsynonymous SNV 0.975 3 40 hm5C_associated_SNPs_46655 0 0 1 0 1 TRIOBP chr22:38168608 3'AG 38168608 Downstream 17bp
chr8 22054839 22054839 1 + C T LAML 22054853 + 22054833 22054873 41 GAAGCCCGAGGTCATCACCTCCCAGTACAACAACATGCGCG GAAGCCTGAGGTCATCACCTCCCAGTACAACAACATGCGCG < 41bp 1 0.132823223766024 1 0.149817824363708 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22054853 chr8:22054839 synonymous SNV . 0 7 hm5C_associated_SNPs_46656 0 0 1 0 2 BMP1 chr8:22054753 3'AG 22054753 Downstream 87bp
chr8 22054839 22054839 1 + C T LAML 22054853 + 22054833 22054873 41 GAAGCCCGAGGTCATCACCTCCCAGTACAACAACATGCGCG GAAGCCTGAGGTCATCACCTCCCAGTACAACAACATGCGCG < 41bp 1 0.132823223766024 1 0.149817824363708 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22054853 chr8:22054839 synonymous SNV . 0 7 hm5C_associated_SNPs_46656 0 0 1 0 2 BMP1 chr8:22054933 5'GT 22054933 Upstream 95bp
chrX 133547576 133547576 1 + T A LAML 133547561 + 133547541 133547581 41 AATGAACATGAACTGGAGCCCTCATCACCTAAAAGTAAAAA AATGAACATGAACTGGAGCCCTCATCACCTAAAAGAAAAAA < 41bp 1 0.162818956113026 1 0.150600880384445 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF6 ENSG00000156531 CDS Human protein_coding chrX:133547561 chrX:133547576 nonsynonymous SNV 0.999 2 36 hm5C_associated_SNPs_46657 0 0 1 0 2 PHF6 chrX:133547518 3'AG 133547518 Downstream 59bp
chrX 133547576 133547576 1 + T A LAML 133547561 + 133547541 133547581 41 AATGAACATGAACTGGAGCCCTCATCACCTAAAAGTAAAAA AATGAACATGAACTGGAGCCCTCATCACCTAAAAGAAAAAA < 41bp 1 0.162818956113026 1 0.150600880384445 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF6 ENSG00000156531 CDS Human protein_coding chrX:133547561 chrX:133547576 nonsynonymous SNV 0.999 2 36 hm5C_associated_SNPs_46657 0 0 1 0 2 PHF6 chrX:133547521 3'AG 133547521 Downstream 56bp
chr22 32445976 32445976 1 + C T LAML 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGGACTGTTGGAGGCTTCTTCCTGGTAGGCCGAAGTATGGT < 41bp 1 0.338620697327483 1 0.443236440420151 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445976 nonsynonymous SNV 0.999 5 26 hm5C_associated_SNPs_46659 0 0 0 0 2 SLC5A1 chr22:32445930 3'AG 32445930 Downstream 47bp
chr22 32445976 32445976 1 + C T LAML 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGGACTGTTGGAGGCTTCTTCCTGGTAGGCCGAAGTATGGT < 41bp 1 0.338620697327483 1 0.443236440420151 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445976 nonsynonymous SNV 0.999 5 26 hm5C_associated_SNPs_46659 0 0 0 0 2 SLC5A1 chr22:32446001 5'GT 32446001 Upstream 26bp
chr17 38152546 38152546 1 + C T LAML 38152535 + 38152515 38152555 41 ATTCCACCCGAGAGCCCCAGCTAGCCTTCCACCAGCGCATC ATTCCACCCGAGAGCCCCAGCTAGCCTTCCATCAGCGCATC < 41bp 1 0.381245905751617 1 0.111271113157272 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38152535 chr17:38152546 synonymous SNV . 0 32 hm5C_associated_SNPs_46660 0 0 1 1 1 PSMD3 chr17:38152591 5'GT 38152591 Upstream 46bp
chr1 24019178 24019178 1 + G A LAML 24019185 + 24019165 24019205 41 TGTGTTGGGGAGAGTGGAGACAGACTGACGCGAGCAGCCAA TGTGTTGGGGAGAATGGAGACAGACTGACGCGAGCAGCCAA < 41bp 1 0.739959925204428 1 0.309301614761353 experiment 0.520080149591143 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24019185 chr1:24019178 nonsynonymous SNV 0.999 2 14 hm5C_associated_SNPs_46661 0 0 1 0 3 RPL11 chr1:24019099 3'AG 24019099 Downstream 80bp
chr1 24019178 24019178 1 + G A LAML 24019185 + 24019165 24019205 41 TGTGTTGGGGAGAGTGGAGACAGACTGACGCGAGCAGCCAA TGTGTTGGGGAGAATGGAGACAGACTGACGCGAGCAGCCAA < 41bp 1 0.739959925204428 1 0.309301614761353 experiment 0.520080149591143 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24019185 chr1:24019178 nonsynonymous SNV 0.999 2 14 hm5C_associated_SNPs_46661 0 0 1 0 3 RPL11 chr1:24019102 3'AG 24019102 Downstream 77bp
chr1 24019178 24019178 1 + G A LAML 24019185 + 24019165 24019205 41 TGTGTTGGGGAGAGTGGAGACAGACTGACGCGAGCAGCCAA TGTGTTGGGGAGAATGGAGACAGACTGACGCGAGCAGCCAA < 41bp 1 0.739959925204428 1 0.309301614761353 experiment 0.520080149591143 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24019185 chr1:24019178 nonsynonymous SNV 0.999 2 14 hm5C_associated_SNPs_46661 0 0 1 0 3 RPL11 chr1:24019249 5'GT 24019249 Upstream 72bp
chr18 61648970 61648970 1 + T A LAML 61648969 + 61648949 61648989 41 TTGCAGGACTTTAAAGAATACTGTCAGAAGTTCTATCAGGC TTGCAGGACTTTAAAGAATACAGTCAGAAGTTCTATCAGGC < 41bp 1 0.189986858075284 1 0.196743369102478 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61648969 chr18:61648970 nonsynonymous SNV 0.330 4 22 hm5C_associated_SNPs_46663 0 0 0 0 1 SERPINB8 chr18:61648955 3'AG 61648955 Downstream 16bp
chr17 15907567 15907567 1 + C T LAML 15907552 + 15907532 15907572 41 TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGCGCAGA TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGTGCAGA < 41bp 1 0.108902748247854 1 0.0754283368587494 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15907552 chr17:15907567 nonsynonymous SNV 0.995 1 36 hm5C_associated_SNPs_46665 0 0 1 2 2 TTC19 chr17:15907515 3'AG 15907515 Downstream 53bp
chr17 15907567 15907567 1 + C T LAML 15907552 + 15907532 15907572 41 TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGCGCAGA TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGTGCAGA < 41bp 1 0.108902748247854 1 0.0754283368587494 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15907552 chr17:15907567 nonsynonymous SNV 0.995 1 36 hm5C_associated_SNPs_46665 0 0 1 2 2 TTC19 chr17:15907576 5'GT 15907576 Upstream 10bp
chr11 94554954 94554954 1 + G A LAML 94554949 + 94554929 94554969 41 ACCGGGTGCTTCACCAGGAACTTCAGGGTTACTACGACAAT ACCGGGTGCTTCACCAGGAACTTCAAGGTTACTACGACAAT < 41bp 1 0.264182780124761 1 0.0764732360839844 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94554949 chr11:94554954 nonsynonymous SNV . 0 26 hm5C_associated_SNPs_46666 0 0 0 0 1 AMOTL1 chr11:94554987 5'GT 94554987 Upstream 34bp
chr19 41510014 41510014 1 + G A LAML 41510016 + 41509996 41510036 41 CTTGTGGACAAGGCTGAGGCCTTCTCTGGCCGGGGAAAAAT CTTGTGGACAAGGCTGAGACCTTCTCTGGCCGGGGAAAAAT < 41bp 1 0.262134485139253 1 0.0710695087909698 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41510016 chr19:41510014 nonsynonymous SNV 0.168 2 19 hm5C_associated_SNPs_46667 0 0 0 0 1 CYP2B6 chr19:41510068 5'GT 41510068 Upstream 55bp
chr11 8934046 8934046 1 + C A LAML 8934032 + 8934012 8934052 41 CCCCCAACCCTTAGTGCTTCCTTCAGAACAATGGCTGAATT CCCCCAACCCTTAGTGCTTCCTTCAGAACAATGGATGAATT < 41bp 1 0.4757308229136 1 0.30458265542984 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKIP1 ENSG00000166452 CDS Human protein_coding chr11:8934032 chr11:8934046 nonsynonymous SNV 0.994 3 35 hm5C_associated_SNPs_46668 0 0 1 0 2 AKIP1 chr11:8934000 3'AG 8934000 Downstream 47bp
chr11 8934046 8934046 1 + C A LAML 8934032 + 8934012 8934052 41 CCCCCAACCCTTAGTGCTTCCTTCAGAACAATGGCTGAATT CCCCCAACCCTTAGTGCTTCCTTCAGAACAATGGATGAATT < 41bp 1 0.4757308229136 1 0.30458265542984 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKIP1 ENSG00000166452 CDS Human protein_coding chr11:8934032 chr11:8934046 nonsynonymous SNV 0.994 3 35 hm5C_associated_SNPs_46668 0 0 1 0 2 AKIP1 chr11:8934080 5'GT 8934080 Upstream 35bp
chr7 99627499 99627499 1 + A G LAML 99627493 + 99627473 99627513 41 TCCTCCCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCC TCCTCCCCCAGCTCTTCCTGCTGCCCGCATTCCTGCACCCC < 41bp 1 0.289729830306364 1 0.0856516659259796 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627493 chr7:99627499 nonsynonymous SNV 0.257 0 27 hm5C_associated_SNPs_46669 0 0 1 0 2 ZKSCAN1 chr7:99627484 3'AG 99627484 Downstream 16bp
chr7 99627499 99627499 1 + A G LAML 99627493 + 99627473 99627513 41 TCCTCCCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCC TCCTCCCCCAGCTCTTCCTGCTGCCCGCATTCCTGCACCCC < 41bp 1 0.289729830306364 1 0.0856516659259796 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627493 chr7:99627499 nonsynonymous SNV 0.257 0 27 hm5C_associated_SNPs_46669 0 0 1 0 2 ZKSCAN1 chr7:99627575 5'GT 99627575 Upstream 77bp
chr7 99627499 99627499 1 + A G LAML 99627498 + 99627478 99627518 41 CCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCCCTCAT CCCCAGCTCTTCCTGCTGCCCGCATTCCTGCACCCCCTCAT < 41bp 1 0.586206336849641 1 0.201083093881607 experiment 0.827587326300719 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627498 chr7:99627499 nonsynonymous SNV 0.257 0 22 hm5C_associated_SNPs_46670 0 0 1 0 2 ZKSCAN1 chr7:99627484 3'AG 99627484 Downstream 16bp
chr7 99627499 99627499 1 + A G LAML 99627498 + 99627478 99627518 41 CCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCCCTCAT CCCCAGCTCTTCCTGCTGCCCGCATTCCTGCACCCCCTCAT < 41bp 1 0.586206336849641 1 0.201083093881607 experiment 0.827587326300719 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627498 chr7:99627499 nonsynonymous SNV 0.257 0 22 hm5C_associated_SNPs_46670 0 0 1 0 2 ZKSCAN1 chr7:99627575 5'GT 99627575 Upstream 77bp
chr15 41865248 41865248 1 + G A LAML 41865260 + 41865240 41865280 41 TTGCCTGCGGCATGGAGTACCTGAGCTCTCGGAACTTCATC TTGCCTGCAGCATGGAGTACCTGAGCTCTCGGAACTTCATC < 41bp 1 0.42234032641187 1 0.099297046661377 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41865260 chr15:41865248 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_46671 0 0 1 0 2 TYRO3 chr15:41865200 3'AG 41865200 Downstream 49bp
chr15 41865248 41865248 1 + G A LAML 41865260 + 41865240 41865280 41 TTGCCTGCGGCATGGAGTACCTGAGCTCTCGGAACTTCATC TTGCCTGCAGCATGGAGTACCTGAGCTCTCGGAACTTCATC < 41bp 1 0.42234032641187 1 0.099297046661377 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41865260 chr15:41865248 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_46671 0 0 1 0 2 TYRO3 chr15:41865309 5'GT 41865309 Upstream 62bp
chr19 6362553 6362553 1 + G A LAML 6362549 + 6362529 6362569 41 ATCCACATGTACATCAACAGCCCTGGTGAGCAGGGTCTTTC ATCCACATGTACATCAACAGCCCTAGTGAGCAGGGTCTTTC < 41bp 1 0.344358302744854 1 0.0274717509746552 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLPP ENSG00000125656 CDS Human protein_coding chr19:6362549 chr19:6362553 nonsynonymous SNV 0.903 4 25 hm5C_associated_SNPs_46672 0 0 1 0 2 CLPP chr19:6362457 3'AG 6362457 Downstream 97bp
chr19 6362553 6362553 1 + G A LAML 6362549 + 6362529 6362569 41 ATCCACATGTACATCAACAGCCCTGGTGAGCAGGGTCTTTC ATCCACATGTACATCAACAGCCCTAGTGAGCAGGGTCTTTC < 41bp 1 0.344358302744854 1 0.0274717509746552 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLPP ENSG00000125656 CDS Human protein_coding chr19:6362549 chr19:6362553 nonsynonymous SNV 0.903 4 25 hm5C_associated_SNPs_46672 0 0 1 0 2 CLPP chr19:6362553 5'GT 6362553 Upstream 1bp
chr19 6362553 6362553 1 + G A LAML 6362550 + 6362530 6362570 41 TCCACATGTACATCAACAGCCCTGGTGAGCAGGGTCTTTCC TCCACATGTACATCAACAGCCCTAGTGAGCAGGGTCTTTCC < 41bp 1 0.09427717839836 1 0.0615889728069305 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLPP ENSG00000125656 CDS Human protein_coding chr19:6362550 chr19:6362553 nonsynonymous SNV 0.903 4 24 hm5C_associated_SNPs_46673 0 0 1 0 2 CLPP chr19:6362457 3'AG 6362457 Downstream 97bp
chr19 6362553 6362553 1 + G A LAML 6362550 + 6362530 6362570 41 TCCACATGTACATCAACAGCCCTGGTGAGCAGGGTCTTTCC TCCACATGTACATCAACAGCCCTAGTGAGCAGGGTCTTTCC < 41bp 1 0.09427717839836 1 0.0615889728069305 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLPP ENSG00000125656 CDS Human protein_coding chr19:6362550 chr19:6362553 nonsynonymous SNV 0.903 4 24 hm5C_associated_SNPs_46673 0 0 1 0 2 CLPP chr19:6362553 5'GT 6362553 Upstream 1bp
chr9 139228926 139228926 1 + C A LAML 139228915 + 139228895 139228935 41 TCTGCACAGGATGGAGGCGTCCTGCCTAGAGCTGGCGCTGG TCTGCACAGGATGGAGGCGTCCTGCCTAGAGATGGCGCTGG < 41bp 1 0.155009415237284 1 0.154563069343567 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139228915 chr9:139228926 nonsynonymous SNV 0.955 3 32 hm5C_associated_SNPs_46674 0 0 1 0 1 GPSM1 chr9:139228904 3'AG 139228904 Downstream 23bp
chr9 139228926 139228926 1 + C A LAML 139228916 + 139228896 139228936 41 CTGCACAGGATGGAGGCGTCCTGCCTAGAGCTGGCGCTGGA CTGCACAGGATGGAGGCGTCCTGCCTAGAGATGGCGCTGGA < 41bp 1 0.471627029295275 1 0.224612504243851 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139228916 chr9:139228926 nonsynonymous SNV 0.955 3 31 hm5C_associated_SNPs_46675 0 0 1 0 1 GPSM1 chr9:139228904 3'AG 139228904 Downstream 23bp
chr20 37144940 37144940 1 + C A LAML 37144939 + 37144919 37144959 41 GCAAGAATTGAATCAGTATCCCTGCCTTAAACATCTGCCTC GCAAGAATTGAATCAGTATCCATGCCTTAAACATCTGCCTC < 41bp 1 0.302640521775024 1 0.386873066425323 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37144939 chr20:37144940 synonymous SNV . 0 22 hm5C_associated_SNPs_46677 0 0 1 0 1 RALGAPB chr20:37145013 5'GT 37145013 Upstream 74bp
chr12 53428441 53428441 1 + G A LAML 53428436 + 53428416 53428456 41 AAGAAACTCAGGAACGGGAACGGTCGAGGACAGGAAGTGAG AAGAAACTCAGGAACGGGAACGGTCAAGGACAGGAAGTGAG < 41bp 1 0.188830324399445 1 0.532856225967407 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53428436 chr12:53428441 synonymous SNV . 0 26 hm5C_associated_SNPs_46679 0 0 1 0 2 EIF4B chr12:53428396 3'AG 53428396 Downstream 46bp
chr12 53428441 53428441 1 + G A LAML 53428436 + 53428416 53428456 41 AAGAAACTCAGGAACGGGAACGGTCGAGGACAGGAAGTGAG AAGAAACTCAGGAACGGGAACGGTCAAGGACAGGAAGTGAG < 41bp 1 0.188830324399445 1 0.532856225967407 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53428436 chr12:53428441 synonymous SNV . 0 26 hm5C_associated_SNPs_46679 0 0 1 0 2 EIF4B chr12:53428493 5'GT 53428493 Upstream 53bp
chr16 16103700 16103700 1 + G A LAML 16103711 + 16103691 16103731 41 AAAGAAGTCGGGGCATATTCCTGGCCCCAGTGTTTCTGGTC AAAGAAGTCAGGGCATATTCCTGGCCCCAGTGTTTCTGGTC < 41bp 1 0.472516449856821 1 0.300415635108948 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16103711 chr16:16103700 nonsynonymous SNV 0.535 0 10 hm5C_associated_SNPs_46680 0 0 1 0 1 ABCC1 chr16:16103758 5'GT 16103758 Upstream 59bp
chr12 112130554 112130554 1 + G A LAML 112130547 + 112130527 112130567 41 GCTGTTTCCAGTCCCCCCGTCTCCAGTGGGTGTGGAGAACA GCTGTTTCCAGTCCCCCCGTCTCCAGTAGGTGTGGAGAACA < 41bp 1 0.738283455266063 1 0.970765054225922 experiment 0.523433089467875 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ACAD10 ENSG00000111271 CDS Human protein_coding chr12:112130547 chr12:112130554 stopgain 0.085 0 28 hm5C_associated_SNPs_46684 0 0 0 0 1 ACAD10 chr12:112130501 3'AG 112130501 Downstream 54bp
chr19 19308376 19308376 1 + C T LAML 19308370 + 19308350 19308390 41 CCAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGC CCAGACGAGCGCGGCTTCACCCCCCTTATCTGGGCCTCCGC < 41bp 1 0.435021544361656 1 0.0621769428253174 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308370 chr19:19308376 synonymous SNV . 0 27 hm5C_associated_SNPs_46685 0 0 1 0 2 RFXANK chr19:19308330 3'AG 19308330 Downstream 47bp
chr19 19308376 19308376 1 + C T LAML 19308370 + 19308350 19308390 41 CCAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGC CCAGACGAGCGCGGCTTCACCCCCCTTATCTGGGCCTCCGC < 41bp 1 0.435021544361656 1 0.0621769428253174 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308370 chr19:19308376 synonymous SNV . 0 27 hm5C_associated_SNPs_46685 0 0 1 0 2 RFXANK chr19:19308430 5'GT 19308430 Upstream 55bp
chr19 19308376 19308376 1 + C T LAML 19308371 + 19308351 19308391 41 CAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGCC CAGACGAGCGCGGCTTCACCCCCCTTATCTGGGCCTCCGCC < 41bp 1 0.364263472691098 1 0.0675775408744812 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308371 chr19:19308376 synonymous SNV . 0 26 hm5C_associated_SNPs_46686 0 0 1 0 2 RFXANK chr19:19308330 3'AG 19308330 Downstream 47bp
chr19 19308376 19308376 1 + C T LAML 19308371 + 19308351 19308391 41 CAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGCC CAGACGAGCGCGGCTTCACCCCCCTTATCTGGGCCTCCGCC < 41bp 1 0.364263472691098 1 0.0675775408744812 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308371 chr19:19308376 synonymous SNV . 0 26 hm5C_associated_SNPs_46686 0 0 1 0 2 RFXANK chr19:19308430 5'GT 19308430 Upstream 55bp
chr7 104717836 104717836 1 + T C LAML 104717824 + 104717804 104717844 41 GATGCACTTATCATTGAATACAGAGGGAAGTTTATGCTGAG GATGCACTTATCATTGAATACAGAGGGAAGTTCATGCTGAG < 41bp 1 0.537452485494253 1 0.738030791282654 experiment 0.925095029011494 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KMT2E ENSG00000005483 CDS Human protein_coding chr7:104717824 chr7:104717836 synonymous SNV . 0 33 hm5C_associated_SNPs_46687 0 0 1 0 1 KMT2E chr7:104717880 5'GT 104717880 Upstream 45bp
chr12 109637325 109637325 1 + G A LAML 109637339 + 109637319 109637359 41 GGCCACGTTGAGGCTGGGAGCAGCTACGCTGAGATGGAGGT GGCCACATTGAGGCTGGGAGCAGCTACGCTGAGATGGAGGT < 41bp 1 0.244657361214408 1 0.688476145267487 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109637339 chr12:109637325 nonsynonymous SNV 0.827 1 7 hm5C_associated_SNPs_46688 0 0 1 0 1 ACACB chr12:109637357 5'GT 109637357 Upstream 33bp
chr16 31473266 31473266 1 + A G LAML 31473271 + 31473251 31473291 41 CTTCAGTGCATGAAGACAGACAGCATCCAGAACCGAACGGC CTTCAGTGCATGAAGGCAGACAGCATCCAGAACCGAACGGC < 41bp 1 0.685863288204596 1 0.457324326038361 experiment 0.628273423590808 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARMC5 ENSG00000140691 CDS Human protein_coding chr16:31473271 chr16:31473266 nonsynonymous SNV 0.998 0 16 hm5C_associated_SNPs_46689 0 0 1 0 2 ARMC5 chr16:31473243 3'AG 31473243 Downstream 24bp
chr16 31473266 31473266 1 + A G LAML 31473271 + 31473251 31473291 41 CTTCAGTGCATGAAGACAGACAGCATCCAGAACCGAACGGC CTTCAGTGCATGAAGGCAGACAGCATCCAGAACCGAACGGC < 41bp 1 0.685863288204596 1 0.457324326038361 experiment 0.628273423590808 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARMC5 ENSG00000140691 CDS Human protein_coding chr16:31473271 chr16:31473266 nonsynonymous SNV 0.998 0 16 hm5C_associated_SNPs_46689 0 0 1 0 2 ARMC5 chr16:31473350 5'GT 31473350 Upstream 85bp
chr11 14666572 14666572 1 + G A LAML 14666571 + 14666551 14666591 41 TTGCAAAATATTCAGGAGACCGTCGTTGCCTTGTATTTCCA TTGCAAAATATTCAGGAGACCATCGTTGCCTTGTATTTCCA < 41bp 1 0.163974511955926 1 0.070493072271347 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE3B ENSG00000152270 CDS Human protein_coding chr11:14666571 chr11:14666572 synonymous SNV . 0 22 hm5C_associated_SNPs_46690 0 0 1 0 1 PDE3B chr11:14666599 5'GT 14666599 Upstream 28bp
chrX 7171325 7171325 1 + G T LAML 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGCATCAAGGCCGAACATCATCCTGGTGATGTCTGACGA < 41bp 1 0.296560972651648 1 0.0658527612686157 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171325 nonsynonymous SNV 0.965 5 34 hm5C_associated_SNPs_46692 0 0 0 0 1 STS chrX:7171237 3'AG 7171237 Downstream 89bp
chr17 46128919 46128919 1 + C T LAML 46128901 + 46128881 46128921 41 CAGGCCCAGACAACGGGGTGCGAGAAAGCGAAACGGAGCAG CAGGCCCAGACAACGGGGTGCGAGAAAGCGAAACGGAGTAG < 41bp 1 0.641384099931389 1 0.400146305561066 experiment 0.717231800137222 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128901 chr17:46128919 stopgain 1.000 0 39 hm5C_associated_SNPs_46693 0 0 1 0 1 NFE2L1 chr17:46128990 5'GT 46128990 Upstream 72bp
chr17 46128919 46128919 1 + C T LAML 46128909 + 46128889 46128929 41 GACAACGGGGTGCGAGAAAGCGAAACGGAGCAGGGATTCGG GACAACGGGGTGCGAGAAAGCGAAACGGAGTAGGGATTCGG < 41bp 1 0.716677015289396 1 0.590491056442261 experiment 0.566645969421208 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128909 chr17:46128919 stopgain 1.000 0 31 hm5C_associated_SNPs_46694 0 0 1 0 1 NFE2L1 chr17:46128990 5'GT 46128990 Upstream 72bp
chr17 46128919 46128919 1 + C T LAML 46128914 + 46128894 46128934 41 CGGGGTGCGAGAAAGCGAAACGGAGCAGGGATTCGGTGAAG CGGGGTGCGAGAAAGCGAAACGGAGTAGGGATTCGGTGAAG < 41bp 1 0.7149211090233 1 0.81730318069458 experiment 0.570157781953399 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128914 chr17:46128919 stopgain 1.000 0 26 hm5C_associated_SNPs_46695 0 0 1 0 1 NFE2L1 chr17:46128990 5'GT 46128990 Upstream 72bp
chr17 46128919 46128919 1 + C T LAML 46128927 + 46128907 46128947 41 AGCGAAACGGAGCAGGGATTCGGTGAAGATTTGGAGGATTT AGCGAAACGGAGTAGGGATTCGGTGAAGATTTGGAGGATTT < 41bp 1 0.602340952074109 1 0.597232460975647 experiment 0.795318095851782 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128927 chr17:46128919 stopgain 1.000 0 13 hm5C_associated_SNPs_46696 0 0 1 0 1 NFE2L1 chr17:46128990 5'GT 46128990 Upstream 72bp
chr19 49652965 49652965 1 + G A LAML 49652948 + 49652928 49652968 41 GAGCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAG GAGCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTACAG < 41bp 1 0.0803373137560852 1 0.124985456466675 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652948 chr19:49652965 synonymous SNV . 0 38 hm5C_associated_SNPs_46697 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 11bp
chr19 49652965 49652965 1 + G A LAML 49652950 + 49652930 49652970 41 GCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCC GCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTACAGCC < 41bp 1 0.0547705433430793 1 0.0563271641731262 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652950 chr19:49652965 synonymous SNV . 0 36 hm5C_associated_SNPs_46698 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 11bp
chr19 49652965 49652965 1 + G A LAML 49652951 + 49652931 49652971 41 CCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCCA CCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTACAGCCA < 41bp 1 0.0404553662721691 1 0.0455279946327209 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652951 chr19:49652965 synonymous SNV . 0 35 hm5C_associated_SNPs_46699 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 11bp
chr19 49652965 49652965 1 + G A LAML 49652952 + 49652932 49652972 41 CCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCCAG CCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTACAGCCAG < 41bp 1 0.208131435684573 1 0.43953213095665 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652952 chr19:49652965 synonymous SNV . 0 34 hm5C_associated_SNPs_46700 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 11bp
chr9 96323483 96323483 1 + C T LAML 96323490 + 96323470 96323510 41 GGGCCGTGGGGGCCGGGGGCCTTTCCCCCTGCAGGTGGTTT GGGCCGTGGGGGCTGGGGGCCTTTCCCCCTGCAGGTGGTTT < 41bp 1 0.048588605120707 1 0.0615107119083405 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAM120A ENSG00000048828 CDS Human protein_coding chr9:96323490 chr9:96323483 nonsynonymous SNV 0.999 4 14 hm5C_associated_SNPs_46701 0 0 1 0 1 FAM120A chr9:96323391 3'AG 96323391 Downstream 93bp
chr3 49720264 49720264 1 + G A LAML 49720263 + 49720243 49720283 41 TTCCTGGGGCTGCAACAGCTCGGTGTCTTGCAGGTGCGTGG TTCCTGGGGCTGCAACAGCTCAGTGTCTTGCAGGTGCGTGG < 41bp 1 0.404510426532256 1 0.217008590698242 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49720263 chr3:49720264 synonymous SNV . 0 22 hm5C_associated_SNPs_46702 0 0 0 0 1 APEH chr3:49720261 3'AG 49720261 Downstream 4bp
chr8 30332325 30332325 1 + C A LAML 30332319 + 30332299 30332339 41 GGACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACCT GGACCCTATTTGTCAGTGGCCTTCCTATGGATATCAAACCT < 41bp 1 0.0784029625722687 1 0.0345578193664551 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RBPMS ENSG00000157110 CDS Human protein_coding chr8:30332319 chr8:30332325 nonsynonymous SNV 0.994 1 27 hm5C_associated_SNPs_46703 0 0 1 0 2 RBPMS chr8:30332295 3'AG 30332295 Downstream 31bp
chr8 30332325 30332325 1 + C A LAML 30332319 + 30332299 30332339 41 GGACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACCT GGACCCTATTTGTCAGTGGCCTTCCTATGGATATCAAACCT < 41bp 1 0.0784029625722687 1 0.0345578193664551 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RBPMS ENSG00000157110 CDS Human protein_coding chr8:30332319 chr8:30332325 nonsynonymous SNV 0.994 1 27 hm5C_associated_SNPs_46703 0 0 1 0 2 RBPMS chr8:30332372 5'GT 30332372 Upstream 48bp
chr20 37570735 37570735 1 + G A LAML 37570736 + 37570716 37570756 41 TCTCAATTTCTGGATATGTGCATGGATCTGAAAGTTCATCC TCTCAATTTCTGGATATGTACATGGATCTGAAAGTTCATCC < 41bp 1 0.474776149159339 1 0.178405523300171 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM83D ENSG00000101447 CDS Human protein_coding chr20:37570736 chr20:37570735 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_46704 0 0 1 0 1 FAM83D chr20:37570769 5'GT 37570769 Upstream 35bp
chr16 87436556 87436556 1 + G A LAML 87436562 + 87436542 87436582 41 CTCAATGCTAATCAGGCCTTCTTCCTGTTGGTGAACGGACA CTCAATGCTAATCAAGCCTTCTTCCTGTTGGTGAACGGACA < 41bp 1 0.0746155237885726 1 0.121186017990112 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MAP1LC3B ENSG00000140941 CDS Human protein_coding chr16:87436562 chr16:87436556 synonymous SNV . 0 15 hm5C_associated_SNPs_46705 0 0 0 0 2 MAP1LC3B chr16:87436529 3'AG 87436529 Downstream 28bp
chr16 87436556 87436556 1 + G A LAML 87436562 + 87436542 87436582 41 CTCAATGCTAATCAGGCCTTCTTCCTGTTGGTGAACGGACA CTCAATGCTAATCAAGCCTTCTTCCTGTTGGTGAACGGACA < 41bp 1 0.0746155237885726 1 0.121186017990112 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MAP1LC3B ENSG00000140941 CDS Human protein_coding chr16:87436562 chr16:87436556 synonymous SNV . 0 15 hm5C_associated_SNPs_46705 0 0 0 0 2 MAP1LC3B chr16:87436532 3'AG 87436532 Downstream 25bp
chr1 145539093 145539093 1 + T C LAML 145539084 + 145539064 145539104 41 CTATCACTGTCTCAAGTCATCACTAACAATGTGAGTCTGGT CTATCACTGTCTCAAGTCATCACTAACAACGTGAGTCTGGT < 41bp 1 0.125296778115137 1 0.273528158664703 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ITGA10 ENSG00000143127 CDS Human protein_coding chr1:145539084 chr1:145539093 synonymous SNV . 0 30 hm5C_associated_SNPs_46706 0 0 0 0 1 ITGA10 chr1:145539093 5'GT 145539093 Upstream 1bp
chr2 27277590 27277590 1 + G A LAML 27277595 + 27277575 27277615 41 TCACTTCCTGCCATGGGCTTCGAGAAGATCGAGAGCCCCGT TCACTTCCTGCCATGAGCTTCGAGAAGATCGAGAGCCCCGT < 41bp 1 0.655587359370137 1 0.758910536766052 experiment 0.688825281259726 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27277595 chr2:27277590 nonsynonymous SNV 0.999 4 16 hm5C_associated_SNPs_46707 0 0 1 0 1 AGBL5 chr2:27277498 3'AG 27277498 Downstream 93bp
chr22 38021843 38021843 1 + T C LAML 38021859 + 38021839 38021879 41 GATCTCCCGCCTGCGGGCACCACCTACCCAGCTATGCCCAC GATCCCCCGCCTGCGGGCACCACCTACCCAGCTATGCCCAC < 41bp 1 0.333898255230926 1 0.273749887943268 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38021859 chr22:38021843 nonsynonymous SNV 0.902 0 5 hm5C_associated_SNPs_46708 0 0 1 0 1 GGA1 chr22:38021804 3'AG 38021804 Downstream 40bp
chr7 99956349 99956349 1 + G T LAML 99956353 + 99956333 99956373 41 CCAAGCTACCTTTATGGGGTCACTCAACCAAAACACCTCTC CCAAGCTACCTTTATGTGGTCACTCAACCAAAACACCTCTC < 41bp 1 0.107039044524856 1 0.0358265042304993 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PILRB ENSG00000121716 CDS Human protein_coding chr7:99956353 chr7:99956349 nonsynonymous SNV 0.001 3 17 hm5C_associated_SNPs_46710 0 0 0 0 1 PILRB chr7:99956313 3'AG 99956313 Downstream 37bp
chr15 57554384 57554384 1 + T A LAML 57554365 + 57554345 57554385 41 GTCTAGTACAGTCACTACTTCAAGCACAGACCTGAACCATA GTCTAGTACAGTCACTACTTCAAGCACAGACCTGAACCAAA < 41bp 1 0.225228212236365 1 0.676103591918945 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554365 chr15:57554384 nonsynonymous SNV 0.999 2 40 hm5C_associated_SNPs_46713 0 0 1 0 2 TCF12 chr15:57554292 3'AG 57554292 Downstream 93bp
chr15 57554384 57554384 1 + T A LAML 57554365 + 57554345 57554385 41 GTCTAGTACAGTCACTACTTCAAGCACAGACCTGAACCATA GTCTAGTACAGTCACTACTTCAAGCACAGACCTGAACCAAA < 41bp 1 0.225228212236365 1 0.676103591918945 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554365 chr15:57554384 nonsynonymous SNV 0.999 2 40 hm5C_associated_SNPs_46713 0 0 1 0 2 TCF12 chr15:57554406 5'GT 57554406 Upstream 23bp
chr15 57554384 57554384 1 + T A LAML 57554369 + 57554349 57554389 41 AGTACAGTCACTACTTCAAGCACAGACCTGAACCATAAAAC AGTACAGTCACTACTTCAAGCACAGACCTGAACCAAAAAAC < 41bp 1 0.321078386081265 1 0.222618937492371 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554369 chr15:57554384 nonsynonymous SNV 0.999 2 36 hm5C_associated_SNPs_46714 0 0 1 0 2 TCF12 chr15:57554292 3'AG 57554292 Downstream 93bp
chr15 57554384 57554384 1 + T A LAML 57554369 + 57554349 57554389 41 AGTACAGTCACTACTTCAAGCACAGACCTGAACCATAAAAC AGTACAGTCACTACTTCAAGCACAGACCTGAACCAAAAAAC < 41bp 1 0.321078386081265 1 0.222618937492371 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554369 chr15:57554384 nonsynonymous SNV 0.999 2 36 hm5C_associated_SNPs_46714 0 0 1 0 2 TCF12 chr15:57554406 5'GT 57554406 Upstream 23bp
chr15 57554384 57554384 1 + T A LAML 57554371 + 57554351 57554391 41 TACAGTCACTACTTCAAGCACAGACCTGAACCATAAAACAC TACAGTCACTACTTCAAGCACAGACCTGAACCAAAAAACAC < 41bp 1 0.134361762554516 1 0.155912965536118 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554371 chr15:57554384 nonsynonymous SNV 0.999 2 34 hm5C_associated_SNPs_46715 0 0 1 0 2 TCF12 chr15:57554292 3'AG 57554292 Downstream 93bp
chr15 57554384 57554384 1 + T A LAML 57554371 + 57554351 57554391 41 TACAGTCACTACTTCAAGCACAGACCTGAACCATAAAACAC TACAGTCACTACTTCAAGCACAGACCTGAACCAAAAAACAC < 41bp 1 0.134361762554516 1 0.155912965536118 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554371 chr15:57554384 nonsynonymous SNV 0.999 2 34 hm5C_associated_SNPs_46715 0 0 1 0 2 TCF12 chr15:57554406 5'GT 57554406 Upstream 23bp
chr15 57554384 57554384 1 + T A LAML 57554381 + 57554361 57554401 41 ACTTCAAGCACAGACCTGAACCATAAAACACAAGAAAATTA ACTTCAAGCACAGACCTGAACCAAAAAACACAAGAAAATTA < 41bp 1 0.235002248299787 1 0.179128795862198 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554381 chr15:57554384 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_46716 0 0 1 0 2 TCF12 chr15:57554292 3'AG 57554292 Downstream 93bp
chr15 57554384 57554384 1 + T A LAML 57554381 + 57554361 57554401 41 ACTTCAAGCACAGACCTGAACCATAAAACACAAGAAAATTA ACTTCAAGCACAGACCTGAACCAAAAAACACAAGAAAATTA < 41bp 1 0.235002248299787 1 0.179128795862198 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554381 chr15:57554384 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_46716 0 0 1 0 2 TCF12 chr15:57554406 5'GT 57554406 Upstream 23bp
chr15 57554384 57554384 1 + T A LAML 57554382 + 57554362 57554402 41 CTTCAAGCACAGACCTGAACCATAAAACACAAGAAAATTAT CTTCAAGCACAGACCTGAACCAAAAAACACAAGAAAATTAT < 41bp 1 0.389510621043952 1 0.552334547042847 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554382 chr15:57554384 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_46717 0 0 1 0 2 TCF12 chr15:57554292 3'AG 57554292 Downstream 93bp
chr15 57554384 57554384 1 + T A LAML 57554382 + 57554362 57554402 41 CTTCAAGCACAGACCTGAACCATAAAACACAAGAAAATTAT CTTCAAGCACAGACCTGAACCAAAAAACACAAGAAAATTAT < 41bp 1 0.389510621043952 1 0.552334547042847 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554382 chr15:57554384 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_46717 0 0 1 0 2 TCF12 chr15:57554406 5'GT 57554406 Upstream 23bp
chr15 57554384 57554384 1 + T A LAML 57554389 + 57554369 57554409 41 CACAGACCTGAACCATAAAACACAAGAAAATTATAGAGGTA CACAGACCTGAACCAAAAAACACAAGAAAATTATAGAGGTA < 41bp 1 0.540756308095501 1 0.611500024795532 experiment 0.918487383808998 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554389 chr15:57554384 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_46718 0 0 1 0 2 TCF12 chr15:57554292 3'AG 57554292 Downstream 93bp
chr15 57554384 57554384 1 + T A LAML 57554389 + 57554369 57554409 41 CACAGACCTGAACCATAAAACACAAGAAAATTATAGAGGTA CACAGACCTGAACCAAAAAACACAAGAAAATTATAGAGGTA < 41bp 1 0.540756308095501 1 0.611500024795532 experiment 0.918487383808998 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554389 chr15:57554384 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_46718 0 0 1 0 2 TCF12 chr15:57554406 5'GT 57554406 Upstream 23bp
chr3 37340507 37340507 1 + T A LAML 37340497 + 37340477 37340517 41 TGGATGAAAGACTTCAAGAACTAGAAAAGATAAAGGTAAAA TGGATGAAAGACTTCAAGAACTAGAAAAGAAAAAGGTAAAA < 41bp 1 0.581951019148268 1 0.577243030071259 experiment 0.836097961703464 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37340497 chr3:37340507 nonsynonymous SNV 1.000 0 31 hm5C_associated_SNPs_46719 0 0 1 0 1 GOLGA4 chr3:37340511 5'GT 37340511 Upstream 5bp
chr7 100200147 100200147 1 + C T LAML 100200134 + 100200114 100200154 41 CCCTCCTCACTGCCTGCGCCCTGCTGCCTTTTGCCCAGGGC CCCTCCTCACTGCCTGCGCCCTGCTGCCTTTTGTCCAGGGC < 41bp 1 0.273779220356739 1 0.132728427648544 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100200134 chr7:100200147 nonsynonymous SNV 0.920 1 34 hm5C_associated_SNPs_46720 0 0 1 0 1 PCOLCE chr7:100200174 5'GT 100200174 Upstream 28bp
chr2 170471230 170471230 1 + T A LAML 170471216 + 170471196 170471236 41 GGATACTCAGTTGTGGAGAGCTGATTCCCAAATCTAAAGGT GGATACTCAGTTGTGGAGAGCTGATTCCCAAATCAAAAGGT < 41bp 1 0.329971293227451 1 0.232607901096344 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIG ENSG00000138398 CDS Human protein_coding chr2:170471216 chr2:170471230 synonymous SNV . 0 35 hm5C_associated_SNPs_46721 0 0 1 0 1 PPIG chr2:170471234 5'GT 170471234 Upstream 5bp
chr16 67915638 67915638 1 + G T LAML 67915625 + 67915605 67915645 41 TTTGGCAACAGCAGAGAGAGCTGGCAGAGCTGCGGCACAGC TTTGGCAACAGCAGAGAGAGCTGGCAGAGCTGCTGCACAGC < 41bp 1 0.470796271382578 1 0.232874602079391 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67915625 chr16:67915638 nonsynonymous SNV 0.819 0 34 hm5C_associated_SNPs_46722 0 0 1 0 1 EDC4 chr16:67915571 3'AG 67915571 Downstream 68bp
chr16 67915638 67915638 1 + G T LAML 67915640 + 67915620 67915660 41 GAGAGCTGGCAGAGCTGCGGCACAGCCAGGAAGAGCTGCTG GAGAGCTGGCAGAGCTGCTGCACAGCCAGGAAGAGCTGCTG < 41bp 1 0.462796610360034 1 0.148676097393036 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67915640 chr16:67915638 nonsynonymous SNV 0.819 0 19 hm5C_associated_SNPs_46723 0 0 1 0 1 EDC4 chr16:67915571 3'AG 67915571 Downstream 68bp
chr17 46133853 46133853 1 + G A LAML 46133838 + 46133818 46133858 41 ATAGTCACCGCCAGAAGGAGCAGGATGTGGAGAAGGAGCTG ATAGTCACCGCCAGAAGGAGCAGGATGTGGAGAAGAAGCTG < 41bp 1 0.793937207075525 1 0.693584680557251 experiment 0.412125585848951 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46133838 chr17:46133853 nonsynonymous SNV 0.988 0 36 hm5C_associated_SNPs_46732 0 0 1 0 1 NFE2L1 chr17:46133781 3'AG 46133781 Downstream 73bp
chr17 46133853 46133853 1 + G A LAML 46133859 + 46133839 46133879 41 AGGATGTGGAGAAGGAGCTGCGAGATGGAGGCGAGCAGGAC AGGATGTGGAGAAGAAGCTGCGAGATGGAGGCGAGCAGGAC < 41bp 1 0.777583993803614 1 0.625565111637115 experiment 0.444832012392772 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46133859 chr17:46133853 nonsynonymous SNV 0.988 0 15 hm5C_associated_SNPs_46733 0 0 1 0 1 NFE2L1 chr17:46133781 3'AG 46133781 Downstream 73bp
chr11 32953888 32953888 1 + T A LAML 32953900 + 32953880 32953920 41 AGTCATCTTTATCCTGTAGCCCAATTGGAGATTCCACTCAG AGTCATCTATATCCTGTAGCCCAATTGGAGATTCCACTCAG < 41bp 1 0.23263395070382 1 0.198721557855606 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QSER1 ENSG00000060749 CDS Human protein_coding chr11:32953900 chr11:32953888 nonsynonymous SNV 0.999 1 9 hm5C_associated_SNPs_46735 0 0 1 0 1 QSER1 chr11:32953920 5'GT 32953920 Upstream 33bp
chr11 32953888 32953888 1 + T A LAML 32953901 + 32953881 32953921 41 GTCATCTTTATCCTGTAGCCCAATTGGAGATTCCACTCAGG GTCATCTATATCCTGTAGCCCAATTGGAGATTCCACTCAGG < 41bp 1 0.103070777169769 1 0.11656054854393 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QSER1 ENSG00000060749 CDS Human protein_coding chr11:32953901 chr11:32953888 nonsynonymous SNV 0.999 1 8 hm5C_associated_SNPs_46736 0 0 1 0 1 QSER1 chr11:32953920 5'GT 32953920 Upstream 33bp
chr11 31392353 31392353 1 + C A LAML 31392369 + 31392349 31392389 41 AGACCCATCTGCAAATATATCAGACCTAAAACAAAAATATC AGACACATCTGCAAATATATCAGACCTAAAACAAAAATATC < 41bp 1 0.347079464558493 1 0.208966732025146 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC24 ENSG00000170946 CDS Human protein_coding chr11:31392369 chr11:31392353 nonsynonymous SNV 0.996 3 5 hm5C_associated_SNPs_46737 0 0 1 0 2 DNAJC24 chr11:31392263 3'AG 31392263 Downstream 91bp
chr11 31392353 31392353 1 + C A LAML 31392369 + 31392349 31392389 41 AGACCCATCTGCAAATATATCAGACCTAAAACAAAAATATC AGACACATCTGCAAATATATCAGACCTAAAACAAAAATATC < 41bp 1 0.347079464558493 1 0.208966732025146 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC24 ENSG00000170946 CDS Human protein_coding chr11:31392369 chr11:31392353 nonsynonymous SNV 0.996 3 5 hm5C_associated_SNPs_46737 0 0 1 0 2 DNAJC24 chr11:31392406 5'GT 31392406 Upstream 54bp
chrX 47063063 47063063 1 + C T LAML 47063072 + 47063052 47063092 41 CAAATCTGAATCGACAGTTTCTTTTCCGGCCCTGGGATGTC CAAATCTGAATTGACAGTTTCTTTTCCGGCCCTGGGATGTC < 41bp 1 0.0309941265320563 1 0.0192440450191498 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBA1 ENSG00000130985 CDS Human protein_coding chrX:47063072 chrX:47063063 stopgain 0.997 1 12 hm5C_associated_SNPs_46738 0 0 1 0 1 UBA1 chrX:47063095 5'GT 47063095 Upstream 33bp
chr14 73576082 73576082 1 + G T LAML 73576075 + 73576055 73576095 41 GTGCTCTTCAGAAAAGGTTGCGTGATAGAGAAAAGGAAATG GTGCTCTTCAGAAAAGGTTGCGTGATATAGAAAAGGAAATG < 41bp 1 0.417024961144436 1 0.236188590526581 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73576075 chr14:73576082 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_46739 0 0 1 0 1 RBM25 chr14:73576050 3'AG 73576050 Downstream 33bp
chr20 31374345 31374345 1 + A G LAML 31374361 + 31374341 31374381 41 CGGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCG CGGGGGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCG < 41bp 1 0.365881691163258 1 0.470959663391113 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374361 chr20:31374345 nonsynonymous SNV 0.793 2 5 hm5C_associated_SNPs_46740 0 0 0 0 1 DNMT3B chr20:31374308 3'AG 31374308 Downstream 38bp
chr20 31374345 31374345 1 + A G LAML 31374362 + 31374342 31374382 41 GGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCGG GGGGGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCGG < 41bp 1 0.661462561424395 1 0.569933533668518 experiment 0.677074877151211 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374362 chr20:31374345 nonsynonymous SNV 0.793 2 4 hm5C_associated_SNPs_46741 0 0 0 0 1 DNMT3B chr20:31374308 3'AG 31374308 Downstream 38bp
chr20 30898672 30898672 1 + G A LAML 30898670 + 30898650 30898690 41 AATTCCAGGAAGAGATTGCTCGGCTCAAGGCCCAGCTGGAA AATTCCAGGAAGAGATTGCTCGACTCAAGGCCCAGCTGGAA < 41bp 1 0.495540290073834 1 0.500047445297241 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898670 chr20:30898672 synonymous SNV . 0 23 hm5C_associated_SNPs_46743 0 0 1 0 1 KIF3B chr20:30898703 5'GT 30898703 Upstream 32bp
chr17 38318113 38318113 1 + G A LAML 38318128 + 38318108 38318148 41 GAAAAGCCTGACACCAAAAGCACTGTGACTGGAGAGAGGCA GAAAAACCTGACACCAAAAGCACTGTGACTGGAGAGAGGCA < 41bp 1 0.277665123411632 1 0.205016165971756 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318128 chr17:38318113 synonymous SNV . 0 6 hm5C_associated_SNPs_46745 0 0 1 0 1 CASC3 chr17:38318164 5'GT 38318164 Upstream 52bp
chr1 45218810 45218810 1 + C G LAML 45218818 + 45218798 45218838 41 CTACAGCTGCCCCCACTAGGCCTTCCTGCCCTGCAGTGGCT CTACAGCTGCCCGCACTAGGCCTTCCTGCCCTGCAGTGGCT < 41bp 1 0.0275065329254985 1 0.0463577508926392 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF2C ENSG00000142945 CDS Human protein_coding chr1:45218818 chr1:45218810 nonsynonymous SNV 0.019 0 13 hm5C_associated_SNPs_46747 0 0 1 0 1 KIF2C chr1:45218804 3'AG 45218804 Downstream 7bp
chr1 45218810 45218810 1 + C G LAML 45218822 + 45218802 45218842 41 AGCTGCCCCCACTAGGCCTTCCTGCCCTGCAGTGGCTGAAA AGCTGCCCGCACTAGGCCTTCCTGCCCTGCAGTGGCTGAAA < 41bp 1 0.0802475633335019 1 0.104266464710236 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF2C ENSG00000142945 CDS Human protein_coding chr1:45218822 chr1:45218810 nonsynonymous SNV 0.019 0 9 hm5C_associated_SNPs_46748 0 0 1 0 1 KIF2C chr1:45218804 3'AG 45218804 Downstream 7bp
chr21 33887127 33887127 1 + A C LAML 33887128 + 33887108 33887148 41 TCTCTTCCTCCTGCAGCCCACCCGGAGAGAGCTGCCCTGCT TCTCTTCCTCCTGCAGCCCCCCCGGAGAGAGCTGCCCTGCT < 41bp 1 0.431969608334761 1 0.617196679115295 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33887128 chr21:33887127 nonsynonymous SNV 0.966 4 20 hm5C_associated_SNPs_46749 0 0 0 0 1 EVA1C chr21:33887124 3'AG 33887124 Downstream 4bp
chr21 33887127 33887127 1 + A C LAML 33887129 + 33887109 33887149 41 CTCTTCCTCCTGCAGCCCACCCGGAGAGAGCTGCCCTGCTG CTCTTCCTCCTGCAGCCCCCCCGGAGAGAGCTGCCCTGCTG < 41bp 1 0.776664315921704 1 0.787989854812622 experiment 0.446671368156592 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33887129 chr21:33887127 nonsynonymous SNV 0.966 4 19 hm5C_associated_SNPs_46750 0 0 0 0 1 EVA1C chr21:33887124 3'AG 33887124 Downstream 4bp
chr21 33887127 33887127 1 + A C LAML 33887130 + 33887110 33887150 41 TCTTCCTCCTGCAGCCCACCCGGAGAGAGCTGCCCTGCTGT TCTTCCTCCTGCAGCCCCCCCGGAGAGAGCTGCCCTGCTGT < 41bp 1 0.631243518093982 1 0.83766233921051 experiment 0.737512963812036 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33887130 chr21:33887127 nonsynonymous SNV 0.966 4 18 hm5C_associated_SNPs_46751 0 0 0 0 1 EVA1C chr21:33887124 3'AG 33887124 Downstream 4bp
chr12 57892312 57892312 1 + T C LAML 57892311 + 57892291 57892331 41 GGACTAACCCCCCAGGAGATCTGCGACAAGTACCACATCAT GGACTAACCCCCCAGGAGATCCGCGACAAGTACCACATCAT < 41bp 1 0.366220512026379 1 0.34752094745636 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARS ENSG00000166986 CDS Human protein_coding chr12:57892311 chr12:57892312 nonsynonymous SNV 0.841 4 22 hm5C_associated_SNPs_46752 0 0 1 0 1 MARS chr12:57892406 5'GT 57892406 Upstream 95bp
chr17 7483880 7483880 1 + C G LAML 7483883 + 7483863 7483903 41 TCTCATTCCCCTATGGACACCTCAGCTTTGGATTCATGCAG TCTCATTCCCCTATGGAGACCTCAGCTTTGGATTCATGCAG < 41bp 1 0.404284287115585 1 0.273457229137421 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CD68 ENSG00000129226 CDS Human protein_coding chr17:7483883 chr17:7483880 nonsynonymous SNV 0.993 1 18 hm5C_associated_SNPs_46753 0 0 0 0 2 CD68 chr17:7483784 3'AG 7483784 Downstream 97bp
chr17 7483880 7483880 1 + C G LAML 7483883 + 7483863 7483903 41 TCTCATTCCCCTATGGACACCTCAGCTTTGGATTCATGCAG TCTCATTCCCCTATGGAGACCTCAGCTTTGGATTCATGCAG < 41bp 1 0.404284287115585 1 0.273457229137421 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CD68 ENSG00000129226 CDS Human protein_coding chr17:7483883 chr17:7483880 nonsynonymous SNV 0.993 1 18 hm5C_associated_SNPs_46753 0 0 0 0 2 CD68 chr17:7483903 5'GT 7483903 Upstream 24bp
chr17 46133907 46133907 1 + C A LAML 46133913 + 46133893 46133933 41 AGGGCGCGGAAGCTCTGGCACGGAACCTGCTAGTGGATGGA AGGGCGCGGAAGCTATGGCACGGAACCTGCTAGTGGATGGA < 41bp 1 0.690942139394317 1 0.596982419490814 experiment 0.618115721211366 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46133913 chr17:46133907 nonsynonymous SNV 0.981 3 15 hm5C_associated_SNPs_46754 0 0 1 0 1 NFE2L1 chr17:46133960 5'GT 46133960 Upstream 54bp
chr17 46133907 46133907 1 + C A LAML 46133918 + 46133898 46133938 41 GCGGAAGCTCTGGCACGGAACCTGCTAGTGGATGGAGAGAC GCGGAAGCTATGGCACGGAACCTGCTAGTGGATGGAGAGAC < 41bp 1 0.12763982229264 1 0.297221779823303 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46133918 chr17:46133907 nonsynonymous SNV 0.981 3 10 hm5C_associated_SNPs_46755 0 0 1 0 1 NFE2L1 chr17:46133960 5'GT 46133960 Upstream 54bp
chr17 46133907 46133907 1 + C A LAML 46133919 + 46133899 46133939 41 CGGAAGCTCTGGCACGGAACCTGCTAGTGGATGGAGAGACT CGGAAGCTATGGCACGGAACCTGCTAGTGGATGGAGAGACT < 41bp 1 0.448944117699554 1 0.111960202455521 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46133919 chr17:46133907 nonsynonymous SNV 0.981 3 9 hm5C_associated_SNPs_46756 0 0 1 0 1 NFE2L1 chr17:46133960 5'GT 46133960 Upstream 54bp
chr3 155629049 155629049 1 + G A LAML 155629040 + 155629020 155629060 41 AGCCAGTCTGTTGAAGAGGCCCTCAAAAAGCTTGGAATTCA AGCCAGTCTGTTGAAGAGGCCCTCAAAAAACTTGGAATTCA < 41bp 1 0.120236107820118 1 0.0672035813331604 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GMPS ENSG00000163655 CDS Human protein_coding chr3:155629040 chr3:155629049 synonymous SNV . 0 30 hm5C_associated_SNPs_46757 0 0 1 0 1 GMPS chr3:155629068 5'GT 155629068 Upstream 20bp
chr2 220505238 220505238 1 + C G LAML 220505231 + 220505211 220505251 41 ATCTTCCTGTACATGGGGGTCACGTCCCTGTCTGGTATCCA ATCTTCCTGTACATGGGGGTCACGTCCGTGTCTGGTATCCA < 41bp 1 0.266701775172666 1 0.050756961107254 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220505231 chr2:220505238 nonsynonymous SNV 0.977 5 28 hm5C_associated_SNPs_46758 0 0 0 0 2 SLC4A3 chr2:220505152 3'AG 220505152 Downstream 87bp
chr2 220505238 220505238 1 + C G LAML 220505231 + 220505211 220505251 41 ATCTTCCTGTACATGGGGGTCACGTCCCTGTCTGGTATCCA ATCTTCCTGTACATGGGGGTCACGTCCGTGTCTGGTATCCA < 41bp 1 0.266701775172666 1 0.050756961107254 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220505231 chr2:220505238 nonsynonymous SNV 0.977 5 28 hm5C_associated_SNPs_46758 0 0 0 0 2 SLC4A3 chr2:220505321 5'GT 220505321 Upstream 84bp
chr3 38287621 38287621 1 + C T LAML 38287619 + 38287599 38287639 41 CTCCAAGTTCCAGAACAGATCTCTGCTCATCTACCTCAGCC CTCCAAGTTCCAGAACAGATCTTTGCTCATCTACCTCAGCC < 41bp 1 0.204778615427623 1 0.0239401757717133 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OXSR1 ENSG00000172939 CDS Human protein_coding chr3:38287619 chr3:38287621 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_46759 0 0 1 0 2 OXSR1 chr3:38287566 3'AG 38287566 Downstream 56bp
chr3 38287621 38287621 1 + C T LAML 38287619 + 38287599 38287639 41 CTCCAAGTTCCAGAACAGATCTCTGCTCATCTACCTCAGCC CTCCAAGTTCCAGAACAGATCTTTGCTCATCTACCTCAGCC < 41bp 1 0.204778615427623 1 0.0239401757717133 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OXSR1 ENSG00000172939 CDS Human protein_coding chr3:38287619 chr3:38287621 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_46759 0 0 1 0 2 OXSR1 chr3:38287712 5'GT 38287712 Upstream 92bp
chr7 142460330 142460330 1 + A G LAML 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCGGGCTA < 41bp 1 0.476345570855089 1 0.304148495197296 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460330 nonsynonymous SNV 0.002 1 36 hm5C_associated_SNPs_46760 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 49bp
chr7 142460330 142460330 1 + A G LAML 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCGGGCTA < 41bp 1 0.476345570855089 1 0.304148495197296 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460330 nonsynonymous SNV 0.002 1 36 hm5C_associated_SNPs_46760 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 89bp
chr7 142460330 142460330 1 + A G LAML 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCGGGCTAAG < 41bp 1 0.248273230869305 1 0.14966344833374 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460330 nonsynonymous SNV 0.002 1 34 hm5C_associated_SNPs_46761 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 49bp
chr7 142460330 142460330 1 + A G LAML 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCGGGCTAAG < 41bp 1 0.248273230869305 1 0.14966344833374 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460330 nonsynonymous SNV 0.002 1 34 hm5C_associated_SNPs_46761 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 89bp
chr7 142460330 142460330 1 + A G LAML 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCGGGCTAAGT < 41bp 1 0.479715330897475 1 0.275223106145859 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460330 nonsynonymous SNV 0.002 1 33 hm5C_associated_SNPs_46762 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 49bp
chr7 142460330 142460330 1 + A G LAML 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCGGGCTAAGT < 41bp 1 0.479715330897475 1 0.275223106145859 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460330 nonsynonymous SNV 0.002 1 33 hm5C_associated_SNPs_46762 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 89bp
chr7 142460330 142460330 1 + A G LAML 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATGCTCCTGTGCTGAGCCGGGCTAAGTGTGAA < 41bp 1 0.526371482526388 1 0.0573431551456451 experiment 0.947257034947223 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460330 nonsynonymous SNV 0.002 1 28 hm5C_associated_SNPs_46763 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 49bp
chr7 142460330 142460330 1 + A G LAML 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATGCTCCTGTGCTGAGCCGGGCTAAGTGTGAA < 41bp 1 0.526371482526388 1 0.0573431551456451 experiment 0.947257034947223 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460330 nonsynonymous SNV 0.002 1 28 hm5C_associated_SNPs_46763 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 89bp
chr7 142460330 142460330 1 + A G LAML 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTCCTGTGCTGAGCCGGGCTAAGTGTGAAGCCTC < 41bp 1 0.512263693997075 1 0.398479759693146 experiment 0.975472612005849 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460330 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_46764 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 49bp
chr7 142460330 142460330 1 + A G LAML 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTCCTGTGCTGAGCCGGGCTAAGTGTGAAGCCTC < 41bp 1 0.512263693997075 1 0.398479759693146 experiment 0.975472612005849 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460330 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_46764 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 89bp
chr7 142460330 142460330 1 + A G LAML 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTCCTGTGCTGAGCCGGGCTAAGTGTGAAGCCTCC < 41bp 1 0.595782534699039 1 0.73170530796051 experiment 0.808434930601922 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460330 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_46765 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 49bp
chr7 142460330 142460330 1 + A G LAML 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTCCTGTGCTGAGCCGGGCTAAGTGTGAAGCCTCC < 41bp 1 0.595782534699039 1 0.73170530796051 experiment 0.808434930601922 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460330 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_46765 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 89bp
chr7 142460330 142460330 1 + A G LAML 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTGTGCTGAGCCGGGCTAAGTGTGAAGCCTCCTACC < 41bp 1 0.314932756242445 1 0.112585663795471 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460330 nonsynonymous SNV 0.002 1 18 hm5C_associated_SNPs_46766 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 49bp
chr7 142460330 142460330 1 + A G LAML 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTGTGCTGAGCCGGGCTAAGTGTGAAGCCTCCTACC < 41bp 1 0.314932756242445 1 0.112585663795471 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460330 nonsynonymous SNV 0.002 1 18 hm5C_associated_SNPs_46766 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 89bp
chr7 142460330 142460330 1 + A G LAML 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAGCCGGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA < 41bp 1 0.039725976894043 1 0.115750014781952 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460330 nonsynonymous SNV 0.002 1 6 hm5C_associated_SNPs_46767 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 49bp
chr7 142460330 142460330 1 + A G LAML 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAGCCGGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA < 41bp 1 0.039725976894043 1 0.115750014781952 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460330 nonsynonymous SNV 0.002 1 6 hm5C_associated_SNPs_46767 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 89bp
chr7 142460330 142460330 1 + A G LAML 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AGCCGGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC < 41bp 1 0.266554835958083 1 0.511811196804047 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460330 nonsynonymous SNV 0.002 1 5 hm5C_associated_SNPs_46768 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 49bp
chr7 142460330 142460330 1 + A G LAML 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AGCCGGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC < 41bp 1 0.266554835958083 1 0.511811196804047 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460330 nonsynonymous SNV 0.002 1 5 hm5C_associated_SNPs_46768 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 89bp
chr7 142460330 142460330 1 + A G LAML 142460348 + 142460328 142460368 41 CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA CCGGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA < 41bp 1 0.02099596444632 1 0.121339619159698 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460348 chr7:142460330 nonsynonymous SNV 0.002 1 3 hm5C_associated_SNPs_46769 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 49bp
chr7 142460330 142460330 1 + A G LAML 142460348 + 142460328 142460368 41 CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA CCGGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA < 41bp 1 0.02099596444632 1 0.121339619159698 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460348 chr7:142460330 nonsynonymous SNV 0.002 1 3 hm5C_associated_SNPs_46769 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 89bp
chr7 142460330 142460330 1 + A G LAML 142460349 + 142460329 142460369 41 CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG CGGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG < 41bp 1 0.242817389155104 1 0.225056529045105 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460349 chr7:142460330 nonsynonymous SNV 0.002 1 2 hm5C_associated_SNPs_46770 0 0 0 0 2 PRSS1 chr7:142460282 3'AG 142460282 Downstream 49bp
chr7 142460330 142460330 1 + A G LAML 142460349 + 142460329 142460369 41 CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG CGGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG < 41bp 1 0.242817389155104 1 0.225056529045105 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460349 chr7:142460330 nonsynonymous SNV 0.002 1 2 hm5C_associated_SNPs_46770 0 0 0 0 2 PRSS1 chr7:142460418 5'GT 142460418 Upstream 89bp
chr1 110465815 110465815 1 + G T LAML 110465798 + 110465778 110465818 41 GTTCTTTCAGATGTGGTGACCAAGCCTGATTGCAACTGCCT GTTCTTTCAGATGTGGTGACCAAGCCTGATTGCAACTTCCT < 41bp 1 0.213505529777879 1 0.199723660945892 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110465798 chr1:110465815 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_46771 0 0 0 0 1 CSF1 chr1:110465788 3'AG 110465788 Downstream 28bp
chr20 31374362 31374362 1 + C T LAML 31374361 + 31374341 31374381 41 CGGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCG CGGGAGAGGCACAGGCCTTCCTCACGTTCCACCCGAGGCCG < 41bp 1 0.599477055074184 1 0.554981708526611 experiment 0.801045889851632 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374361 chr20:31374362 nonsynonymous SNV 0.192 1 22 hm5C_associated_SNPs_46772 0 0 0 0 1 DNMT3B chr20:31374308 3'AG 31374308 Downstream 55bp
chr18 21495369 21495369 1 + A T LAML 21495376 + 21495356 21495396 41 TCAACACAACTGAAGTGGAGCCTTGTAGAAGGTAAATAAAA TCAACACAACTGATGTGGAGCCTTGTAGAAGGTAAATAAAA < 41bp 1 0.00593002141827093 1 0.0359818637371063 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21495376 chr18:21495369 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_46773 0 0 0 0 1 LAMA3 chr18:21495386 5'GT 21495386 Upstream 18bp
chr1 109772148 109772148 1 + A G LAML 109772129 + 109772109 109772149 41 GGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCCGAGAG GGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCCGAGGG < 41bp 1 0.575033244198599 1 0.385469138622284 experiment 0.849933511602802 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SARS ENSG00000031698 CDS Human protein_coding chr1:109772129 chr1:109772148 nonsynonymous SNV 0.994 1 40 hm5C_associated_SNPs_46774 0 0 1 0 1 SARS chr1:109772194 5'GT 109772194 Upstream 47bp
chr1 62330253 62330253 1 + G A LAML 62330248 + 62330228 62330268 41 GAGTCTCAAGAGGCAAGAACCGGGAGGACTGTCTATTCCCA GAGTCTCAAGAGGCAAGAACCGGGAAGACTGTCTATTCCCA < 41bp 1 0.792532751166486 1 0.91205358505249 experiment 0.414934497667029 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PATJ ENSG00000132849 CDS Human protein_coding chr1:62330248 chr1:62330253 nonsynonymous SNV 0.005 0 26 hm5C_associated_SNPs_46775 0 0 1 0 1 PATJ chr1:62330305 5'GT 62330305 Upstream 53bp
chr5 7885830 7885830 1 + A T LAML 7885818 + 7885798 7885838 41 TTTGGCTCTTCTCTAGAATACAGACTTTTCCTATCAGCCTG TTTGGCTCTTCTCTAGAATACAGACTTTTCCTTTCAGCCTG < 41bp 1 0.424826087235059 1 0.311278820037842 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885818 chr5:7885830 nonsynonymous SNV 0.996 1 33 hm5C_associated_SNPs_46776 0 0 1 0 1 MTRR chr5:7885814 3'AG 7885814 Downstream 17bp
chr5 7885830 7885830 1 + A T LAML 7885822 + 7885802 7885842 41 GCTCTTCTCTAGAATACAGACTTTTCCTATCAGCCTGGAGA GCTCTTCTCTAGAATACAGACTTTTCCTTTCAGCCTGGAGA < 41bp 1 0.0398022315148243 1 0.0267396867275238 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885822 chr5:7885830 nonsynonymous SNV 0.996 1 29 hm5C_associated_SNPs_46777 0 0 1 0 1 MTRR chr5:7885814 3'AG 7885814 Downstream 17bp
chr5 7885830 7885830 1 + A T LAML 7885828 + 7885808 7885848 41 CTCTAGAATACAGACTTTTCCTATCAGCCTGGAGATGCCTT CTCTAGAATACAGACTTTTCCTTTCAGCCTGGAGATGCCTT < 41bp 1 0.0536852524873307 1 0.0900717973709106 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885828 chr5:7885830 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_46778 0 0 1 0 1 MTRR chr5:7885814 3'AG 7885814 Downstream 17bp
chr5 7885830 7885830 1 + A T LAML 7885832 + 7885812 7885852 41 AGAATACAGACTTTTCCTATCAGCCTGGAGATGCCTTCAGC AGAATACAGACTTTTCCTTTCAGCCTGGAGATGCCTTCAGC < 41bp 1 0.387723262089341 1 0.237009227275848 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885832 chr5:7885830 nonsynonymous SNV 0.996 1 19 hm5C_associated_SNPs_46779 0 0 1 0 1 MTRR chr5:7885814 3'AG 7885814 Downstream 17bp
chr5 7885830 7885830 1 + A T LAML 7885835 + 7885815 7885855 41 ATACAGACTTTTCCTATCAGCCTGGAGATGCCTTCAGCGTG ATACAGACTTTTCCTTTCAGCCTGGAGATGCCTTCAGCGTG < 41bp 1 0.242933286693395 1 0.248867362737656 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885835 chr5:7885830 nonsynonymous SNV 0.996 1 16 hm5C_associated_SNPs_46780 0 0 1 0 1 MTRR chr5:7885814 3'AG 7885814 Downstream 17bp
chr6 30866769 30866769 1 + G A LAML 30866775 + 30866755 30866795 41 CTCACCGACGAGCAGGTCATCGAGAACGCGGGGGAGTTCTT CTCACCGACGAGCAAGTCATCGAGAACGCGGGGGAGTTCTT < 41bp 1 0.788896506723447 1 0.742699146270752 experiment 0.422206986553107 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control DDR1 ENSG00000204580 CDS Human protein_coding chr6:30866775 chr6:30866769 synonymous SNV . 0 15 hm5C_associated_SNPs_46783 0 0 1 0 1 DDR1 chr6:30866814 5'GT 30866814 Upstream 46bp
chr15 69718696 69718696 1 + C T LAML 69718677 + 69718657 69718697 41 ATTTCTCTGTTGTCCTAGGCCAGAAAAAGAGACGTATTGCT ATTTCTCTGTTGTCCTAGGCCAGAAAAAGAGACGTATTGTT < 41bp 1 0.563264403059581 1 0.556152164936066 experiment 0.873471193880839 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69718677 chr15:69718696 nonsynonymous SNV 0.998 4 40 hm5C_associated_SNPs_46784 0 0 1 0 1 KIF23 chr15:69718675 3'AG 69718675 Downstream 22bp
chr20 21312450 21312450 1 + G T LAML 21312451 + 21312431 21312471 41 TCATCATTGTTTATGTGGAGCAGATGGTAAGTTTCTTCTTT TCATCATTGTTTATGTGGATCAGATGGTAAGTTTCTTCTTT < 41bp 1 0.298114852853941 1 0.16995033621788 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XRN2 ENSG00000088930 CDS Human protein_coding chr20:21312451 chr20:21312450 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_46786 0 0 1 0 2 XRN2 chr20:21312406 3'AG 21312406 Downstream 45bp
chr20 21312450 21312450 1 + G T LAML 21312451 + 21312431 21312471 41 TCATCATTGTTTATGTGGAGCAGATGGTAAGTTTCTTCTTT TCATCATTGTTTATGTGGATCAGATGGTAAGTTTCTTCTTT < 41bp 1 0.298114852853941 1 0.16995033621788 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XRN2 ENSG00000088930 CDS Human protein_coding chr20:21312451 chr20:21312450 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_46786 0 0 1 0 2 XRN2 chr20:21312456 5'GT 21312456 Upstream 7bp
chr7 56136249 56136249 1 + A G LAML 56136260 + 56136240 56136280 41 CCAGACAGCAGAGATGGTGACGGGCCTGTGCGGGAGGCGAC CCAGACAGCGGAGATGGTGACGGGCCTGTGCGGGAGGCGAC < 41bp 1 0.662198921980458 1 0.671773910522461 experiment 0.675602156039083 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUMF2 ENSG00000129103 CDS Human protein_coding chr7:56136260 chr7:56136249 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_46787 0 0 1 0 2 SUMF2 chr7:56136175 3'AG 56136175 Downstream 75bp
chr7 56136249 56136249 1 + A G LAML 56136260 + 56136240 56136280 41 CCAGACAGCAGAGATGGTGACGGGCCTGTGCGGGAGGCGAC CCAGACAGCGGAGATGGTGACGGGCCTGTGCGGGAGGCGAC < 41bp 1 0.662198921980458 1 0.671773910522461 experiment 0.675602156039083 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUMF2 ENSG00000129103 CDS Human protein_coding chr7:56136260 chr7:56136249 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_46787 0 0 1 0 2 SUMF2 chr7:56136331 5'GT 56136331 Upstream 83bp
chr20 33589984 33589984 1 + A G LAML 33589995 + 33589975 33590015 41 CTCAGCACAAGGAGTGACGGCCTGACCCCCTGGGCTCTAAA CTCAGCACAGGGAGTGACGGCCTGACCCCCTGGGCTCTAAA < 41bp 1 0.137133698260521 1 0.285622328519821 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MYH7B ENSG00000078814 CDS Human protein_coding chr20:33589995 chr20:33589984 nonsynonymous SNV 0.961 1 10 hm5C_associated_SNPs_46788 0 0 0 0 1 MYH7B chr20:33589980 3'AG 33589980 Downstream 5bp
chr11 48142753 48142753 1 + T C LAML 48142738 + 48142718 48142758 41 CATCACAGGCTTACGTCCAGCGACTTCATATGTATTCTCCA CATCACAGGCTTACGTCCAGCGACTTCATATGTATCCTCCA < 41bp 1 0.197011154068072 1 0.0562607049942017 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48142738 chr11:48142753 nonsynonymous SNV 0.001 0 36 hm5C_associated_SNPs_46789 0 0 0 0 1 PTPRJ chr11:48142818 5'GT 48142818 Upstream 66bp
chr18 33785204 33785204 1 + C T LAML 33785184 + 33785164 33785204 41 CAGCCCTGAGGTTCAGGGCCCAATCATCAATTTTAATGTGC CAGCCCTGAGGTTCAGGGCCCAATCATCAATTTTAATGTGT < 41bp 1 0.0316105530815744 1 0.0229431688785553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33785184 chr18:33785204 synonymous SNV . 0 41 hm5C_associated_SNPs_46790 0 0 1 0 1 MOCOS chr18:33785239 5'GT 33785239 Upstream 36bp
chr6 43188281 43188281 1 + C T LAML 43188295 + 43188275 43188315 41 CCCGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC CCCGCCTAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC < 41bp 1 0.487275974061702 1 0.350506842136383 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188295 chr6:43188281 stopgain 0.946 1 7 hm5C_associated_SNPs_46792 0 0 0 0 2 CUL9 chr6:43188197 3'AG 43188197 Downstream 85bp
chr6 43188281 43188281 1 + C T LAML 43188295 + 43188275 43188315 41 CCCGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC CCCGCCTAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC < 41bp 1 0.487275974061702 1 0.350506842136383 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188295 chr6:43188281 stopgain 0.946 1 7 hm5C_associated_SNPs_46792 0 0 0 0 2 CUL9 chr6:43188337 5'GT 43188337 Upstream 57bp
chr8 25167988 25167988 1 + T A LAML 25168004 + 25167984 25168024 41 ACACTTGGTTGATAGATCAACAGCAATAGCCCGGAAGATGG ACACATGGTTGATAGATCAACAGCAATAGCCCGGAAGATGG < 41bp 1 0.599321410862293 1 0.35824254155159 experiment 0.801357178275415 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25168004 chr8:25167988 nonsynonymous SNV 0.996 3 5 hm5C_associated_SNPs_46793 0 0 1 0 1 DOCK5 chr8:25168048 5'GT 25168048 Upstream 61bp
chr13 114202762 114202762 1 + C T BRCA 114202762 + 114202742 114202782 41 GAAGAGCGGGCGTCATCTCTCGGGAGGTGAGTGGCTTCCCC GAAGAGCGGGCGTCATCTCTTGGGAGGTGAGTGGCTTCCCC Direct Loss 0.992066417294592 0 0.95954716 0.93735886 prediction 0.984132834589184 Functional Loss - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114202762 chr13:114202762 nonsynonymous SNV 0.935 4 21 hm5C_associated_SNPs_46799 0 0 1 0 1 TMCO3 chr13:114202767 5'GT 114202767 Upstream 6bp
chr22 45826834 45826834 1 + C T GBM 45826834 + 45826814 45826854 41 ACTGGGACCGGCGGAGGATTCAGGGGGCTCGCGCCACCCTG ACTGGGACCGGCGGAGGATTTAGGGGGCTCGCGCCACCCTG Direct Loss 0.990388309504493 0 0.95217806 0.92283285 prediction 0.980776619008985 Functional Loss - RIBC2 ENSG00000128408 CDS Human protein_coding chr22:45826834 chr22:45826834 stopgain 0.003 0 21 hm5C_associated_SNPs_46803 0 0 0 0 1 RIBC2 chr22:45826780 3'AG 45826780 Downstream 55bp
chr11 34937813 34937813 1 - G A rs2956114 34937813 - 34937793 34937833 41 CCATGTCTGGCTGTGATGCTCGGGAGGGAGACTGTTGTTCC CCATGTCTGGCTGTGATGCTTGGGAGGGAGACTGTTGTTCC Direct Loss 0.989941656927402 0 0.931221 0.84175146 prediction 0.979883313854804 Functional Loss - APIP ENSG00000149089 CDS Human protein_coding chr11:34937813 chr11:34937813 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_46805 1 0 1 0 1 APIP chr11:34937775 5'GT 34937775 Upstream 39bp
chr15 43426123 43426123 1 + C G rs573311291 43426123 + 43426103 43426143 41 CTGCCGCGCCCCGCGCCCCCCAGGAGGCCGCACCCTGCGCC CTGCCGCGCCCCGCGCCCCCGAGGAGGCCGCACCCTGCGCC Direct Loss 0.989269045328455 0 0.9127227 0.90353155 prediction 0.978538090656911 Functional Loss - TMEM62 ENSG00000137842 CDS Human protein_coding chr15:43426123 chr15:43426123 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_46813 0 0 1 0 1 TMEM62 chr15:43426180 5'GT 43426180 Upstream 58bp
chr11 118402921 118402921 1 + C T UCEC 118402921 + 118402901 118402941 41 CCTGGGCTGAGCGGGCACTTCGGGAGAATGAACGCCACGCC CCTGGGCTGAGCGGGCACTTTGGGAGAATGAACGCCACGCC Direct Loss 0.989065647766632 0 0.9249209 0.9162731 prediction 0.978131295533264 Functional Loss - TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118402921 chr11:118402921 nonsynonymous SNV 0.052 4 21 hm5C_associated_SNPs_46817 0 0 1 0 1 TMEM25 chr11:118402865 3'AG 118402865 Downstream 57bp
chr19 8121127 8121127 1 + C T COAD 8121127 + 8121107 8121147 41 TACCGGATCCAGGAGGTGAGCGGGAGCTGCAATCTGCCTGC TACCGGATCCAGGAGGTGAGTGGGAGCTGCAATCTGCCTGC Direct Loss 0.988981490321969 0 0.92526495 0.89492977 prediction 0.977962980643939 Functional Loss - CCL25 ENSG00000131142 CDS Human protein_coding chr19:8121127 chr19:8121127 synonymous SNV . 0 21 hm5C_associated_SNPs_46821 0 0 0 0 2 CCL25 chr19:8121036 3'AG 8121036 Downstream 92bp
chr19 8121127 8121127 1 + C T COAD 8121127 + 8121107 8121147 41 TACCGGATCCAGGAGGTGAGCGGGAGCTGCAATCTGCCTGC TACCGGATCCAGGAGGTGAGTGGGAGCTGCAATCTGCCTGC Direct Loss 0.988981490321969 0 0.92526495 0.89492977 prediction 0.977962980643939 Functional Loss - CCL25 ENSG00000131142 CDS Human protein_coding chr19:8121127 chr19:8121127 synonymous SNV . 0 21 hm5C_associated_SNPs_46821 0 0 0 0 2 CCL25 chr19:8121153 5'GT 8121153 Upstream 27bp
chr19 57157105 57157105 1 + C T rs559534942 57157105 + 57157085 57157125 41 GGACCAAGACTCTGCTGCCTCGGGAGAGCCGGGCCTGGGAG GGACCAAGACTCTGCTGCCTTGGGAGAGCCGGGCCTGGGAG Direct Loss 0.988542526102923 0 0.9229962 0.8464952 prediction 0.977085052205846 Functional Loss - SMIM17 ENSG00000268182 CDS Human protein_coding chr19:57157105 chr19:57157105 nonsynonymous SNV 0.765 0 21 hm5C_associated_SNPs_46823 0 0 0 0 1 SMIM17 chr19:57157204 5'GT 57157204 Upstream 100bp
chr3 157155647 157155647 1 + C T rs112277608 157155647 + 157155627 157155667 41 GCTAGAGGAGCTGCGGCAGACGCGAGCCGACCTGCACGCGG GCTAGAGGAGCTGCGGCAGATGCGAGCCGACCTGCACGCGG Direct Loss 0.988383422978257 0 0.8362474 0.7218811 prediction 0.976766845956515 Functional Loss - PTX3 ENSG00000163661 CDS Human protein_coding chr3:157155647 chr3:157155647 nonsynonymous SNV 0.581 1 21 hm5C_associated_SNPs_46825 0 0 1 0 1 PTX3 chr3:157155703 5'GT 157155703 Upstream 57bp
chr15 44829415 44829415 1 + C G TGCT 44829415 + 44829395 44829435 41 GGCGGCGGCGGCGGCGGCGGCGGGGGACTCGGACTCCTGGG GGCGGCGGCGGCGGCGGCGGGGGGGGACTCGGACTCCTGGG Direct Loss 0.988146885725435 0 0.93747044 0.932057 prediction 0.976293771450871 Functional Loss - EIF3J ENSG00000104131 CDS Human protein_coding chr15:44829415 chr15:44829415 nonsynonymous SNV 0.993 0 21 hm5C_associated_SNPs_46827 0 0 1 0 1 EIF3J chr15:44829435 5'GT 44829435 Upstream 21bp
chr1 156028127 156028127 1 + C A KIRC 156028127 + 156028107 156028147 41 CCCAGGCTTTGGTGCAGTACCTGGAGGAGCCCCTCACCCAA CCCAGGCTTTGGTGCAGTACATGGAGGAGCCCCTCACCCAA Direct Loss 0.988047693352361 0 0.89530694 0.8622373 prediction 0.976095386704721 Functional Loss - LAMTOR2 ENSG00000116586 CDS Human protein_coding chr1:156028127 chr1:156028127 nonsynonymous SNV 0.995 3 21 hm5C_associated_SNPs_46828 0 0 1 0 1 LAMTOR2 chr1:156028106 3'AG 156028106 Downstream 22bp
chr15 44829571 44829571 1 + C T TGCT 44829571 + 44829551 44829591 41 GTGCGGAAGGTGGGGGGCGGCGGCACTGCCGGCGGGGACCG GTGCGGAAGGTGGGGGGCGGTGGCACTGCCGGCGGGGACCG Direct Loss 0.987747830903681 0 0.89911187 0.87768674 prediction 0.975495661807363 Functional Loss - EIF3J ENSG00000104131 CDS Human protein_coding chr15:44829571 chr15:44829571 synonymous SNV . 0 21 hm5C_associated_SNPs_46832 0 0 1 0 2 EIF3J chr15:44829522 3'AG 44829522 Downstream 50bp
chr15 44829571 44829571 1 + C T TGCT 44829571 + 44829551 44829591 41 GTGCGGAAGGTGGGGGGCGGCGGCACTGCCGGCGGGGACCG GTGCGGAAGGTGGGGGGCGGTGGCACTGCCGGCGGGGACCG Direct Loss 0.987747830903681 0 0.89911187 0.87768674 prediction 0.975495661807363 Functional Loss - EIF3J ENSG00000104131 CDS Human protein_coding chr15:44829571 chr15:44829571 synonymous SNV . 0 21 hm5C_associated_SNPs_46832 0 0 1 0 2 EIF3J chr15:44829625 5'GT 44829625 Upstream 55bp
chr14 52735279 52735279 1 + C A LUSC 52735279 + 52735259 52735299 41 TGTGCCGAGCCGCGCGCGGACGGGAGGGAAGCGTCCCCTCA TGTGCCGAGCCGCGCGCGGAAGGGAGGGAAGCGTCCCCTCA Direct Loss 0.987512290126265 0 0.91696465 0.91734964 prediction 0.975024580252529 Functional Loss - PTGDR ENSG00000168229 CDS Human protein_coding chr14:52735279 chr14:52735279 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_46835 0 0 0 0 1 PTGDR chr14:52735378 5'GT 52735378 Upstream 100bp
chr2 224822340 224822340 1 + C T LUAD 224822340 + 224822320 224822360 41 AGTTAGAGCGGCAGCGCCTTCTGCGGTGCCCGCCGCCGCCC AGTTAGAGCGGCAGCGCCTTTTGCGGTGCCCGCCGCCGCCC Direct Loss 0.987321598124226 0 0.55952376 0.6655483 prediction 0.974643196248452 Functional Loss - MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224822340 chr2:224822340 synonymous SNV . 0 21 hm5C_associated_SNPs_46837 0 0 1 0 1 MRPL44 chr2:224822368 5'GT 224822368 Upstream 29bp
chr19 34303788 34303788 1 + C T COAD 34303788 + 34303768 34303808 41 TCAGCGAGTATGTGCTTTGCCGGGAGGAGCGGCGGCCGCAG TCAGCGAGTATGTGCTTTGCTGGGAGGAGCGGCGGCCGCAG Direct Loss 0.987048044178036 0 0.90475833 0.7682271 prediction 0.974096088356072 Functional Loss - KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34303788 chr19:34303788 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_46841 0 0 1 0 1 KCTD15 chr19:34303695 3'AG 34303695 Downstream 94bp
chr5 1032303 1032303 1 + C T SKCM 1032303 + 1032283 1032323 41 ACCCCAAGGAGGGGCCTTTCCGGGAGGACCAGTGTCCCCTA ACCCCAAGGAGGGGCCTTTCTGGGAGGACCAGTGTCCCCTA Direct Loss 0.986603529329041 0 0.9281645 0.91150486 prediction 0.973207058658083 Functional Loss - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1032303 chr5:1032303 nonsynonymous SNV 0.162 0 21 hm5C_associated_SNPs_46845 0 0 0 0 1 NKD2 chr5:1032267 3'AG 1032267 Downstream 37bp
chr18 28991245 28991245 1 + C G LUAD 28991245 + 28991225 28991265 41 CACGGTGGAAGGAGGTGTATCGGGAGTGGAGCTCAACACAG CACGGTGGAAGGAGGTGTATGGGGAGTGGAGCTCAACACAG Direct Loss 0.986243408854958 0 0.92833924 0.9065529 prediction 0.972486817709916 Functional Loss - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28991245 chr18:28991245 nonsynonymous SNV 0.988 3 21 hm5C_associated_SNPs_46847 0 0 0 0 1 DSG4 chr18:28991194 3'AG 28991194 Downstream 52bp
chr6 393159 393159 1 + C G DLBC 393159 + 393139 393179 41 ACGGCACGCGGGGCATGAACCTGGAGGGCGGCGGCCGAGGC ACGGCACGCGGGGCATGAACGTGGAGGGCGGCGGCCGAGGC Direct Loss 0.986146732664153 0 0.8766281 0.8945295 prediction 0.972293465328306 Functional Loss - IRF4 ENSG00000137265 CDS Human protein_coding chr6:393159 chr6:393159 nonsynonymous SNV 0.814 2 21 hm5C_associated_SNPs_46849 0 0 0 0 1 IRF4 chr6:393098 3'AG 393098 Downstream 62bp
chr6 42989434 42989434 1 + C A rs564567932 42989434 + 42989414 42989454 41 GCCGGGGCCGGGGCCGGGGCCGGGGCCCGACGTCCCCGCGG GCCGGGGCCGGGGCCGGGGCAGGGGCCCGACGTCCCCGCGG Direct Loss 0.98614335802319 0 0.92904043 0.9116093 prediction 0.97228671604638 Functional Loss - RRP36 ENSG00000124541 CDS Human protein_coding chr6:42989434 chr6:42989434 synonymous SNV . 0 21 hm5C_associated_SNPs_46850 0 0 1 0 1 RRP36 chr6:42989522 5'GT 42989522 Upstream 89bp
chr17 80674690 80674690 1 + C T BLCA 80674690 + 80674670 80674710 41 TGTCAGGGCCACGGGCCACTCGGGGGGCGGGTGCATCAGCC TGTCAGGGCCACGGGCCACTTGGGGGGCGGGTGCATCAGCC Direct Loss 0.985986053052232 0 0.93288743 0.912982 prediction 0.971972106104465 Functional Loss - FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80674690 chr17:80674690 nonsynonymous SNV 0.937 0 21 hm5C_associated_SNPs_46853 0 0 1 0 1 FN3KRP chr17:80674772 5'GT 80674772 Upstream 83bp
chr3 24535932 24535932 1 + C A rs6798457 24535932 + 24535912 24535952 41 CGCCGCGCGGTGCCCGAACACGAGAGGGCACCTCCTCCCAG CGCCGCGCGGTGCCCGAACAAGAGAGGGCACCTCCTCCCAG Direct Loss 0.985813619453525 0 0.89250004 0.89040923 prediction 0.97162723890705 Functional Loss - THRB-AS1 ENSG00000228791 ncRNA_exonic Human processed_transcript chr3:24535932 chr3:24535932 . . 0 21 hm5C_associated_SNPs_46856 0 0 0 0 1 THRB-AS1 chr3:24535982 5'GT 24535982 Upstream 51bp
chr1 111862902 111862902 1 + C A HNSC 111862902 + 111862882 111862922 41 AGTGGCAGCGGGAACGGGAGCGGGAGTAGCAGCTCTGGAGG AGTGGCAGCGGGAACGGGAGAGGGAGTAGCAGCTCTGGAGG Direct Loss 0.985711515913912 0 0.9237833 0.9075936 prediction 0.971423031827823 Functional Loss - CHIA ENSG00000134216 CDS Human protein_coding chr1:111862902 chr1:111862902 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_46860 0 0 0 0 1 CHIA chr1:111862835 3'AG 111862835 Downstream 68bp
chr16 30199763 30199763 1 + C T UCEC 30199763 + 30199743 30199783 41 CTGAGGAGTGGCTGGGGGGTCGGGATGCTGGGCCCCTCCTC CTGAGGAGTGGCTGGGGGGTTGGGATGCTGGGCCCCTCCTC Direct Loss 0.985659532709563 0 0.94488597 0.9383313 prediction 0.971319065419125 Functional Loss - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30199763 chr16:30199763 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_46863 0 0 0 0 1 CORO1A chr16:30199682 3'AG 30199682 Downstream 82bp
chr13 44453783 44453783 1 - G A rs3816311 44453783 - 44453763 44453803 41 GGTTCCCTCGTGCCAGCTGCCGGGAGGCGGGAGGGAGGTAG GGTTCCCTCGTGCCAGCTGCTGGGAGGCGGGAGGGAGGTAG Direct Loss 0.985327667563352 0 0.92530733 0.9164022 prediction 0.970655335126703 Functional Loss - CCDC122;LACC1 ENSG00000151773;ENSG00000179630 UTR5 Human other chr13:44453783 chr13:44453783 . . 0 21 hm5C_associated_SNPs_46869 0 0 0 0 1 CCDC122;LACC1 chr13:44453767 5'GT 44453767 Upstream 17bp
chr9 32384709 32384709 1 + C T rs7854312 32384709 + 32384689 32384729 41 TGGGTCAGGTTCGCCGGTCGCGGGAGCCCCGCCGTGCAGTC TGGGTCAGGTTCGCCGGTCGTGGGAGCCCCGCCGTGCAGTC Direct Loss 0.985245666985128 0 0.9385574 0.91043425 prediction 0.970491333970256 Functional Loss - ACO1 ENSG00000122729 UTR5 Human protein_coding chr9:32384709 chr9:32384709 . . 0 21 hm5C_associated_SNPs_46871 0 0 1 0 1 ACO1 chr9:32384733 5'GT 32384733 Upstream 25bp
chr8 38034611 38034611 1 + C T BLCA 38034611 + 38034591 38034631 41 AGGCGATGGCTACTATCCCTCGGGAGGCGCCTGGCCAGAGC AGGCGATGGCTACTATCCCTTGGGAGGCGCCTGGCCAGAGC Direct Loss 0.985129751668708 0 0.93192804 0.8988668 prediction 0.970259503337415 Functional Loss - BAG4 ENSG00000156735 CDS Human protein_coding chr8:38034611 chr8:38034611 nonsynonymous SNV 0.737 2 21 hm5C_associated_SNPs_46874 0 0 1 0 1 BAG4 chr8:38034657 5'GT 38034657 Upstream 47bp
chr17 74139352 74139352 1 + C G rs577279119 74139352 + 74139332 74139372 41 CGAGGAAGGACAGGGATCCTCAGGAAGGGGGTCCTGGCCAC CGAGGAAGGACAGGGATCCTGAGGAAGGGGGTCCTGGCCAC Direct Loss 0.984984264529078 0 0.8813623 0.7728029 prediction 0.969968529058156 Functional Loss - RNF157-AS1 ENSG00000267128 ncRNA_exonic Human antisense chr17:74139352 chr17:74139352 . . 0 21 hm5C_associated_SNPs_46876 0 0 0 0 2 RNF157-AS1 chr17:74139311 3'AG 74139311 Downstream 42bp
chr17 74139352 74139352 1 + C G rs577279119 74139352 + 74139332 74139372 41 CGAGGAAGGACAGGGATCCTCAGGAAGGGGGTCCTGGCCAC CGAGGAAGGACAGGGATCCTGAGGAAGGGGGTCCTGGCCAC Direct Loss 0.984984264529078 0 0.8813623 0.7728029 prediction 0.969968529058156 Functional Loss - RNF157-AS1 ENSG00000267128 ncRNA_exonic Human antisense chr17:74139352 chr17:74139352 . . 0 21 hm5C_associated_SNPs_46876 0 0 0 0 2 RNF157-AS1 chr17:74139429 5'GT 74139429 Upstream 78bp
chr1 75602801 75602801 1 + C T rs141641179 75602801 + 75602781 75602821 41 GCAGGTGAGCCCCGAGGGAGCGGGGGACGAGGACTCGTGCT GCAGGTGAGCCCCGAGGGAGTGGGGGACGAGGACTCGTGCT Direct Loss 0.984760471148729 0 0.9448949 0.91753256 prediction 0.969520942297457 Functional Loss - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75602801 chr1:75602801 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_46883 0 0 0 0 2 LHX8 chr1:75602785 3'AG 75602785 Downstream 17bp
chr1 75602801 75602801 1 + C T rs141641179 75602801 + 75602781 75602821 41 GCAGGTGAGCCCCGAGGGAGCGGGGGACGAGGACTCGTGCT GCAGGTGAGCCCCGAGGGAGTGGGGGACGAGGACTCGTGCT Direct Loss 0.984760471148729 0 0.9448949 0.91753256 prediction 0.969520942297457 Functional Loss - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75602801 chr1:75602801 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_46883 0 0 0 0 2 LHX8 chr1:75602790 3'AG 75602790 Downstream 12bp
chr21 45563186 45563186 1 + C T UCEC 45563186 + 45563166 45563206 41 GGTGGCAAGTGGCCTTATGCCGGGACCGCAGAGGCCATCAA GGTGGCAAGTGGCCTTATGCTGGGACCGCAGAGGCCATCAA Direct Loss 0.984629374961499 0 0.9166472 0.8862587 prediction 0.969258749922999 Functional Loss - C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45563186 chr21:45563186 synonymous SNV . 0 21 hm5C_associated_SNPs_46885 0 0 1 0 1 C21orf33 chr21:45563087 3'AG 45563087 Downstream 100bp
chr15 43690268 43690268 1 + C T COAD 43690268 + 43690248 43690288 41 AGGCAAGAGAAGGGCCTTCTCGGGAAACTTCTCCCCGGGAA AGGCAAGAGAAGGGCCTTCTTGGGAAACTTCTCCCCGGGAA Direct Loss 0.984404958982379 0 0.90878 0.86634195 prediction 0.968809917964759 Functional Loss - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43690268 chr15:43690268 nonsynonymous SNV 0.994 2 21 hm5C_associated_SNPs_46888 1 0 1 0 2 TUBGCP4 chr15:43690236 3'AG 43690236 Downstream 33bp
chr15 43690268 43690268 1 + C T COAD 43690268 + 43690248 43690288 41 AGGCAAGAGAAGGGCCTTCTCGGGAAACTTCTCCCCGGGAA AGGCAAGAGAAGGGCCTTCTTGGGAAACTTCTCCCCGGGAA Direct Loss 0.984404958982379 0 0.90878 0.86634195 prediction 0.968809917964759 Functional Loss - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43690268 chr15:43690268 nonsynonymous SNV 0.994 2 21 hm5C_associated_SNPs_46888 1 0 1 0 2 TUBGCP4 chr15:43690239 3'AG 43690239 Downstream 30bp
chr2 242122122 242122122 1 + C A PAAD 242122122 + 242122102 242122142 41 AGCTGAAGGGAGCCAGGAGCCTGGAGACAGTGTACCTGGAG AGCTGAAGGGAGCCAGGAGCATGGAGACAGTGTACCTGGAG Direct Loss 0.984300564447642 0 0.76675296 0.84885263 prediction 0.968601128895283 Functional Loss - PPP1R7 ENSG00000115685 CDS Human protein_coding chr2:242122122 chr2:242122122 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_46890 0 0 0 0 1 PPP1R7 chr2:242122062 3'AG 242122062 Downstream 61bp
chr1 234367230 234367230 1 + C A SKCM 234367230 + 234367210 234367250 41 CCGGCCGGGGTGGAGGCCGGCGGGAGAGCGAGTCGCCGCTG CCGGCCGGGGTGGAGGCCGGAGGGAGAGCGAGTCGCCGCTG Direct Loss 0.984280504922745 0 0.9078573 0.9022638 prediction 0.968561009845491 Functional Loss - SLC35F3 ENSG00000183780 CDS Human protein_coding chr1:234367230 chr1:234367230 synonymous SNV . 0 21 hm5C_associated_SNPs_46891 0 0 0 0 1 SLC35F3 chr1:234367163 3'AG 234367163 Downstream 68bp
chr3 50230579 50230579 1 + C T UCEC 50230579 + 50230559 50230599 41 CTTTCAGGTGCCGGTGAGTCCGGGAAGAGCACCATCGTCAA CTTTCAGGTGCCGGTGAGTCTGGGAAGAGCACCATCGTCAA Direct Loss 0.984025815961146 0 0.8825494 0.71906686 prediction 0.968051631922292 Functional Loss - GNAT1 ENSG00000114349 CDS Human protein_coding chr3:50230579 chr3:50230579 synonymous SNV . 0 21 hm5C_associated_SNPs_46900 0 0 0 0 2 GNAT1 chr3:50230566 3'AG 50230566 Downstream 14bp
chr3 50230579 50230579 1 + C T UCEC 50230579 + 50230559 50230599 41 CTTTCAGGTGCCGGTGAGTCCGGGAAGAGCACCATCGTCAA CTTTCAGGTGCCGGTGAGTCTGGGAAGAGCACCATCGTCAA Direct Loss 0.984025815961146 0 0.8825494 0.71906686 prediction 0.968051631922292 Functional Loss - GNAT1 ENSG00000114349 CDS Human protein_coding chr3:50230579 chr3:50230579 synonymous SNV . 0 21 hm5C_associated_SNPs_46900 0 0 0 0 2 GNAT1 chr3:50230608 5'GT 50230608 Upstream 30bp
chr18 21083604 21083604 1 + C G rs143953070 21083604 + 21083584 21083624 41 TGGGCGAGGAGGACTACTATCTGGAGCTGTGCGAGCGGCCG TGGGCGAGGAGGACTACTATGTGGAGCTGTGCGAGCGGCCG Direct Loss 0.983975084419589 0 0.38255358 0.25506383 prediction 0.967950168839177 Functional Loss - C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21083604 chr18:21083604 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_46901 0 0 1 0 1 C18orf8 chr18:21083684 5'GT 21083684 Upstream 81bp
chr11 118889933 118889933 1 + C A LGG 118889933 + 118889913 118889953 41 GGAAAGAGGTGCTGGAGTATCTGGGTAACCCTGCTAATTAC GGAAAGAGGTGCTGGAGTATATGGGTAACCCTGCTAATTAC Direct Loss 0.983908738818619 0 0.85874474 0.44666854 prediction 0.967817477637237 Functional Loss - TRAPPC4 ENSG00000196655 CDS Human protein_coding chr11:118889933 chr11:118889933 nonsynonymous SNV 0.992 4 21 hm5C_associated_SNPs_46902 0 0 1 0 2 TRAPPC4 chr11:118889853 3'AG 118889853 Downstream 81bp
chr11 118889933 118889933 1 + C A LGG 118889933 + 118889913 118889953 41 GGAAAGAGGTGCTGGAGTATCTGGGTAACCCTGCTAATTAC GGAAAGAGGTGCTGGAGTATATGGGTAACCCTGCTAATTAC Direct Loss 0.983908738818619 0 0.85874474 0.44666854 prediction 0.967817477637237 Functional Loss - TRAPPC4 ENSG00000196655 CDS Human protein_coding chr11:118889933 chr11:118889933 nonsynonymous SNV 0.992 4 21 hm5C_associated_SNPs_46902 0 0 1 0 2 TRAPPC4 chr11:118890027 5'GT 118890027 Upstream 95bp
chrX 117861658 117861658 1 + C G MESO 117861658 + 117861638 117861678 41 CTGCTGCTCTGCGCCGGCGGCGGGGGCGGGGGCGGGGGCGC CTGCTGCTCTGCGCCGGCGGGGGGGGCGGGGGCGGGGGCGC Direct Loss 0.983680742881803 0 0.94085145 0.93788815 prediction 0.967361485763607 Functional Loss - IL13RA1 ENSG00000131724 CDS Human protein_coding chrX:117861658 chrX:117861658 synonymous SNV . 0 21 hm5C_associated_SNPs_46906 0 0 1 0 1 IL13RA1 chrX:117861689 5'GT 117861689 Upstream 32bp
chr11 70279300 70279300 1 + C T UCEC 70279300 + 70279280 70279320 41 GCATGGAGGCCGCTGACTACCGAGAGGCCAGCAGCCAGCAG GCATGGAGGCCGCTGACTACTGAGAGGCCAGCAGCCAGCAG Direct Loss 0.983557820850445 0 0.9361471 0.888041 prediction 0.96711564170089 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70279300 chr11:70279300 stopgain 0.001 0 21 hm5C_associated_SNPs_46912 0 0 1 0 2 CTTN chr11:70279207 3'AG 70279207 Downstream 94bp
chr11 70279300 70279300 1 + C T UCEC 70279300 + 70279280 70279320 41 GCATGGAGGCCGCTGACTACCGAGAGGCCAGCAGCCAGCAG GCATGGAGGCCGCTGACTACTGAGAGGCCAGCAGCCAGCAG Direct Loss 0.983557820850445 0 0.9361471 0.888041 prediction 0.96711564170089 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70279300 chr11:70279300 stopgain 0.001 0 21 hm5C_associated_SNPs_46912 0 0 1 0 2 CTTN chr11:70279384 5'GT 70279384 Upstream 85bp
chr15 45249121 45249121 1 + C G rs11638723 45249121 + 45249101 45249141 41 AGGGGGAACGATCAGTGACCCGCGAGCCGCCGACTTCTTGT AGGGGGAACGATCAGTGACCGGCGAGCCGCCGACTTCTTGT Direct Loss 0.983542117845353 0 0.6874921 0.66546726 prediction 0.967084235690705 Functional Loss - TERB2 ENSG00000167014 CDS Human protein_coding chr15:45249121 chr15:45249121 nonsynonymous SNV 0.036 0 21 hm5C_associated_SNPs_46913 0 0 0 0 2 TERB2 chr15:45249094 3'AG 45249094 Downstream 28bp
chr15 45249121 45249121 1 + C G rs11638723 45249121 + 45249101 45249141 41 AGGGGGAACGATCAGTGACCCGCGAGCCGCCGACTTCTTGT AGGGGGAACGATCAGTGACCGGCGAGCCGCCGACTTCTTGT Direct Loss 0.983542117845353 0 0.6874921 0.66546726 prediction 0.967084235690705 Functional Loss - TERB2 ENSG00000167014 CDS Human protein_coding chr15:45249121 chr15:45249121 nonsynonymous SNV 0.036 0 21 hm5C_associated_SNPs_46913 0 0 0 0 2 TERB2 chr15:45249175 5'GT 45249175 Upstream 55bp
chr11 252841 252841 1 + C T rs3817635 252841 + 252821 252861 41 TCTCAGGGTCTTAGGTGATACGGGAGAGAAAGAACGTGCCA TCTCAGGGTCTTAGGTGATATGGGAGAGAAAGAACGTGCCA Direct Loss 0.983061419723017 0 0.814682 0.8491295 prediction 0.966122839446034 Functional Loss - PSMD13 ENSG00000185627 UTR3 Human protein_coding chr11:252841 chr11:252841 . . 0 21 hm5C_associated_SNPs_46923 0 0 1 0 1 PSMD13 chr11:252813 3'AG 252813 Downstream 29bp
chr1 171116864 171116864 1 + C T SARC 171116864 + 171116844 171116884 41 CGTGATTGGTCTGGGGAATTCGGGATCTGACATTGCTGTTG CGTGATTGGTCTGGGGAATTTGGGATCTGACATTGCTGTTG Direct Loss 0.9828855020932 0 0.8975138 0.8869747 prediction 0.9657710041864 Functional Loss - FMO6P ENSG00000117507 CDS Human transcribed_unitary_pseudogene chr1:171116864 chr1:171116864 nonsynonymous SNV 0.273 3 21 hm5C_associated_SNPs_46926 0 0 0 0 2 FMO6P chr1:171116765 3'AG 171116765 Downstream 100bp
chr1 171116864 171116864 1 + C T SARC 171116864 + 171116844 171116884 41 CGTGATTGGTCTGGGGAATTCGGGATCTGACATTGCTGTTG CGTGATTGGTCTGGGGAATTTGGGATCTGACATTGCTGTTG Direct Loss 0.9828855020932 0 0.8975138 0.8869747 prediction 0.9657710041864 Functional Loss - FMO6P ENSG00000117507 CDS Human transcribed_unitary_pseudogene chr1:171116864 chr1:171116864 nonsynonymous SNV 0.273 3 21 hm5C_associated_SNPs_46926 0 0 0 0 2 FMO6P chr1:171116907 5'GT 171116907 Upstream 44bp
chr7 107302129 107302129 1 - G A CESC 107302129 - 107302109 107302149 41 CATGTAGCTGCAGCTGTACTCGGGGAGCTGCGGCGGCTCCG CATGTAGCTGCAGCTGTACTTGGGGAGCTGCGGCGGCTCCG Direct Loss 0.982811604889946 0 0.95306826 0.92134666 prediction 0.965623209779892 Functional Loss - SLC26A4 ENSG00000091137 CDS Human antisense chr7:107302129 chr7:107302129 nonsynonymous SNV 0.757 1 21 hm5C_associated_SNPs_46930 0 0 0 0 1 SLC26A4-AS1 chr7:107302047 5'GT 107302047 Upstream 83bp
chr17 30696710 30696710 1 + C T SKCM 30696710 + 30696690 30696730 41 CGCCAATGGTGCCCCCTTACCAGGGTGGGCCTCCTCGACCT CGCCAATGGTGCCCCCTTACTAGGGTGGGCCTCCTCGACCT Direct Loss 0.981825694856874 0 0.95262486 0.93512803 prediction 0.963651389713748 Functional Loss - ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30696710 chr17:30696710 stopgain 1.000 1 21 hm5C_associated_SNPs_46956 0 0 1 0 3 ZNF207 chr17:30696618 3'AG 30696618 Downstream 93bp
chr17 30696710 30696710 1 + C T SKCM 30696710 + 30696690 30696730 41 CGCCAATGGTGCCCCCTTACCAGGGTGGGCCTCCTCGACCT CGCCAATGGTGCCCCCTTACTAGGGTGGGCCTCCTCGACCT Direct Loss 0.981825694856874 0 0.95262486 0.93512803 prediction 0.963651389713748 Functional Loss - ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30696710 chr17:30696710 stopgain 1.000 1 21 hm5C_associated_SNPs_46956 0 0 1 0 3 ZNF207 chr17:30696764 5'GT 30696764 Upstream 55bp
chr17 30696710 30696710 1 + C T SKCM 30696710 + 30696690 30696730 41 CGCCAATGGTGCCCCCTTACCAGGGTGGGCCTCCTCGACCT CGCCAATGGTGCCCCCTTACTAGGGTGGGCCTCCTCGACCT Direct Loss 0.981825694856874 0 0.95262486 0.93512803 prediction 0.963651389713748 Functional Loss - ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30696710 chr17:30696710 stopgain 1.000 1 21 hm5C_associated_SNPs_46956 0 0 1 0 3 ZNF207 chr17:30696801 5'GT 30696801 Upstream 92bp
chr12 72332824 72332824 1 + C A STAD 72332824 + 72332804 72332844 41 GGGCACGGAGAGGGTTTTCCCTGGATTCAGCAGTGCCCGAA GGGCACGGAGAGGGTTTTCCATGGATTCAGCAGTGCCCGAA Direct Loss 0.98170310410522 0 0.83255863 0.40468374 prediction 0.96340620821044 Functional Loss - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72332824 chr12:72332824 nonsynonymous SNV 0.629 3 21 hm5C_associated_SNPs_46958 0 0 0 0 1 TPH2 chr12:72332871 5'GT 72332871 Upstream 48bp
chr16 67208152 67208152 1 + C T BLCA 67208152 + 67208132 67208172 41 CGAGACGCTGCAGGCGGACTCGGGACTGCTGTTGGACGCGC CGAGACGCTGCAGGCGGACTTGGGACTGCTGTTGGACGCGC Direct Loss 0.981634209834134 0 0.9073533 0.8315977 prediction 0.963268419668268 Functional Loss - NOL3 ENSG00000140939 CDS Human protein_coding chr16:67208152 chr16:67208152 nonsynonymous SNV 0.765 3 21 hm5C_associated_SNPs_46962 0 0 1 0 1 NOL3 chr16:67208065 3'AG 67208065 Downstream 88bp
chr5 178287106 178287106 1 + C T rs554080483 178287106 + 178287086 178287126 41 TGCGGCGGGGAGGCGCGGCCCGGGAACGCGGGATCCTGGGG TGCGGCGGGGAGGCGCGGCCTGGGAACGCGGGATCCTGGGG Direct Loss 0.981520176863049 0 0.9077889 0.7894882 prediction 0.963040353726098 Functional Loss - ZNF354B ENSG00000178338 UTR5 Human protein_coding chr5:178287106 chr5:178287106 . . 0 21 hm5C_associated_SNPs_46963 0 0 1 0 1 ZNF354B chr5:178287128 5'GT 178287128 Upstream 23bp
chr19 36120454 36120454 1 + C G LUAD 36120454 + 36120434 36120474 41 AGTTCTGGGGGCTCCAGTACCTGGAATCCCAACTGCTGTGC AGTTCTGGGGGCTCCAGTACGTGGAATCCCAACTGCTGTGC Direct Loss 0.981404835678171 0 0.8686094 0.7304591 prediction 0.962809671356342 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36120454 chr19:36120454 nonsynonymous SNV 0.980 1 21 hm5C_associated_SNPs_46969 0 0 1 0 1 RBM42 chr19:36120422 3'AG 36120422 Downstream 33bp
chr16 216068 216068 1 + C T HNSC 216068 + 216048 216088 41 GCGGGCCACGAGGCGCAATTCGGGGCGGAGCTGCTGCTCAG GCGGGCCACGAGGCGCAATTTGGGGCGGAGCTGCTGCTCAG Direct Loss 0.981346095676295 0 0.95800126 0.9390615 prediction 0.962692191352591 Functional Loss - HBM ENSG00000206177 CDS Human protein_coding chr16:216068 chr16:216068 synonymous SNV . 0 21 hm5C_associated_SNPs_46970 0 0 0 0 1 HBM chr16:216088 5'GT 216088 Upstream 21bp
chr6 151773706 151773706 1 + C T LUSC 151773706 + 151773686 151773726 41 TGTCGTCCCGGCGTCTCTCTCAGGACAGGACGTGGGGTTAG TGTCGTCCCGGCGTCTCTCTTAGGACAGGACGTGGGGTTAG Direct Loss 0.981336433302633 0 0.92392755 0.8890819 prediction 0.962672866605266 Functional Loss - ARMT1 ENSG00000146476 CDS Human protein_coding chr6:151773706 chr6:151773706 nonsynonymous SNV 0.037 1 21 hm5C_associated_SNPs_46971 0 0 1 0 1 ARMT1 chr6:151773721 5'GT 151773721 Upstream 16bp
chr17 46628488 46628488 1 - G A PRAD 46628488 - 46628468 46628508 41 GGCGGAGGCAGTGGTGGCAGCGGGGGCGGTGGCGGCGGCGG GGCGGAGGCAGTGGTGGCAGTGGGGGCGGTGGCGGCGGCGG Direct Loss 0.981109730642014 0 0.925731 0.9119381 prediction 0.962219461284029 Functional Loss - HOXB3 ENSG00000120093 CDS Human protein_coding chr17:46628488 chr17:46628488 synonymous SNV . 0 21 hm5C_associated_SNPs_46975 0 0 1 0 1 HOXB3 chr17:46628543 3'AG 46628543 Downstream 56bp
chr8 109482115 109482115 1 + C T LUSC 109482115 + 109482095 109482135 41 GGAAAAATGTGGAGGCCATTCGGGAGCTGAATGAGTATCTG GGAAAAATGTGGAGGCCATTTGGGAGCTGAATGAGTATCTG Direct Loss 0.98101368179923 0 0.9046985 0.5218032 prediction 0.962027363598461 Functional Loss - EMC2 ENSG00000104412 CDS Human protein_coding chr8:109482115 chr8:109482115 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_46979 0 0 1 0 2 EMC2 chr8:109482055 3'AG 109482055 Downstream 61bp
chr8 109482115 109482115 1 + C T LUSC 109482115 + 109482095 109482135 41 GGAAAAATGTGGAGGCCATTCGGGAGCTGAATGAGTATCTG GGAAAAATGTGGAGGCCATTTGGGAGCTGAATGAGTATCTG Direct Loss 0.98101368179923 0 0.9046985 0.5218032 prediction 0.962027363598461 Functional Loss - EMC2 ENSG00000104412 CDS Human protein_coding chr8:109482115 chr8:109482115 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_46979 0 0 1 0 2 EMC2 chr8:109482140 5'GT 109482140 Upstream 26bp
chr3 196439449 196439449 1 + C T rs10855 196439449 + 196439429 196439469 41 GGGCGGCCGCCTGGCTGCTCCTCGGGGCGGCGACCGGGCTC GGGCGGCCGCCTGGCTGCTCTTCGGGGCGGCGACCGGGCTC Direct Loss 0.980998106007384 0 0.9258696 0.9383979 prediction 0.961996212014769 Functional Loss - PIGX ENSG00000163964 CDS Human protein_coding chr3:196439449 chr3:196439449 nonsynonymous SNV 0.289 1 21 hm5C_associated_SNPs_46980 0 0 1 0 1 PIGX chr3:196439515 5'GT 196439515 Upstream 67bp
chr20 35507482 35507482 1 + C T UCEC 35507482 + 35507462 35507502 41 CCAAGAGTCACCGGCCATCCCTGGAGTCTGGTCTTCTGCAC CCAAGAGTCACCGGCCATCCTTGGAGTCTGGTCTTCTGCAC Direct Loss 0.980911535222132 0 0.40549916 0.8281902 prediction 0.961823070444264 Functional Loss - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35507482 chr20:35507482 synonymous SNV . 0 21 hm5C_associated_SNPs_46983 0 0 0 0 1 TLDC2 chr20:35507444 3'AG 35507444 Downstream 39bp
chr11 55032734 55032734 1 + C G CESC 55032734 + 55032714 55032754 41 GTTTGCTGTGCTCCAGCTCTCAGGAGCACCGGTATCACAGA GTTTGCTGTGCTCCAGCTCTGAGGAGCACCGGTATCACAGA Direct Loss 0.980906659820384 0 0.9242609 0.6520046 prediction 0.961813319640767 Functional Loss - TRIM48 ENSG00000150244 CDS Human protein_coding chr11:55032734 chr11:55032734 nonsynonymous SNV 0.088 1 21 hm5C_associated_SNPs_46984 0 0 0 0 1 TRIM48 chr11:55032790 5'GT 55032790 Upstream 57bp
chr9 130425628 130425628 1 + C T SKCM 130425628 + 130425608 130425648 41 AGTACCCGGCTGTGCGGTATCGGGGGTAAGGCAGTGCACCA AGTACCCGGCTGTGCGGTATTGGGGGTAAGGCAGTGCACCA Direct Loss 0.980889869901452 0 0.9642918 0.9452731 prediction 0.961779739802905 Functional Loss - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130425628 chr9:130425628 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_46985 0 0 0 0 1 STXBP1 chr9:130425632 5'GT 130425632 Upstream 5bp
chr10 119014801 119014801 1 + C T STAD 119014801 + 119014781 119014821 41 CCTGCAGTGGGCCCCCCCTTCGGGAGTGTGCTCTATGAGTT CCTGCAGTGGGCCCCCCCTTTGGGAGTGTGCTCTATGAGTT Direct Loss 0.980480270665838 0 0.90448153 0.6544188 prediction 0.960960541331677 Functional Loss - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119014801 chr10:119014801 synonymous SNV . 0 21 hm5C_associated_SNPs_46989 0 0 0 0 2 SLC18A2 chr10:119014788 3'AG 119014788 Downstream 14bp
chr10 119014801 119014801 1 + C T STAD 119014801 + 119014781 119014821 41 CCTGCAGTGGGCCCCCCCTTCGGGAGTGTGCTCTATGAGTT CCTGCAGTGGGCCCCCCCTTTGGGAGTGTGCTCTATGAGTT Direct Loss 0.980480270665838 0 0.90448153 0.6544188 prediction 0.960960541331677 Functional Loss - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119014801 chr10:119014801 synonymous SNV . 0 21 hm5C_associated_SNPs_46989 0 0 0 0 2 SLC18A2 chr10:119014877 5'GT 119014877 Upstream 77bp
chr16 67237481 67237481 1 + C T STAD 67237481 + 67237461 67237501 41 ACTTCATTGCCCCCTCCAAGCGGGAGGTGAGTGTCCGCCAG ACTTCATTGCCCCCTCCAAGTGGGAGGTGAGTGTCCGCCAG Direct Loss 0.980376662245793 0 0.947871 0.9187689 prediction 0.960753324491585 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67237481 chr16:67237481 nonsynonymous SNV 0.980 2 21 hm5C_associated_SNPs_46992 0 0 1 0 2 ELMO3 chr16:67237400 3'AG 67237400 Downstream 82bp
chr16 67237481 67237481 1 + C T STAD 67237481 + 67237461 67237501 41 ACTTCATTGCCCCCTCCAAGCGGGAGGTGAGTGTCCGCCAG ACTTCATTGCCCCCTCCAAGTGGGAGGTGAGTGTCCGCCAG Direct Loss 0.980376662245793 0 0.947871 0.9187689 prediction 0.960753324491585 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67237481 chr16:67237481 nonsynonymous SNV 0.980 2 21 hm5C_associated_SNPs_46992 0 0 1 0 2 ELMO3 chr16:67237486 5'GT 67237486 Upstream 6bp
chr7 26678910 26678910 1 + C G rs111516571 26678910 + 26678890 26678930 41 CAAGCCAGGGAGAGGGGCCTCGGGGAAGCCAACCCTGCCTA CAAGCCAGGGAGAGGGGCCTGGGGGAAGCCAACCCTGCCTA Direct Loss 0.980212142420348 0 0.9344511 0.9217169 prediction 0.960424284840695 Functional Loss - C7orf71 ENSG00000222004 CDS Human lincRNA chr7:26678910 chr7:26678910 synonymous SNV . 0 21 hm5C_associated_SNPs_46997 0 0 0 0 1 C7orf71 chr7:26678963 5'GT 26678963 Upstream 54bp
chr19 17379674 17379674 1 + C T COAD 17379674 + 17379654 17379694 41 GGAGGAGGAAGAGGAGCACTCGGCAGAGCCTCGGCCCCGCA GGAGGAGGAAGAGGAGCACTTGGCAGAGCCTCGGCCCCGCA Direct Loss 0.98016103459001 0 0.8937466 0.69640225 prediction 0.960322069180021 Functional Loss - BABAM1 ENSG00000105393 CDS Human protein_coding chr19:17379674 chr19:17379674 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_46998 0 0 1 0 1 BABAM1 chr19:17379603 3'AG 17379603 Downstream 72bp
chr7 98951655 98951655 1 + C T rs73710441 98951655 + 98951635 98951675 41 GGCACTGGTGGCTGGGTCCACGGGGTAAGCTTCTCTGCCAG GGCACTGGTGGCTGGGTCCATGGGGTAAGCTTCTCTGCCAG Direct Loss 0.980048768988812 0 0.9114163 0.8904085 prediction 0.960097537977624 Functional Loss - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98951655 chr7:98951655 synonymous SNV . 0 21 hm5C_associated_SNPs_47005 0 0 1 0 1 ARPC1A chr7:98951744 5'GT 98951744 Upstream 90bp
chr9 12694344 12694344 1 + C A UCEC 12694344 + 12694324 12694364 41 TGTGGGACGTGCCGTCCTGGCTGGAGAGGAGCTGCCTGTGA TGTGGGACGTGCCGTCCTGGATGGAGAGGAGCTGCCTGTGA Direct Loss 0.979989330504212 0 0.3078984 0.51164603 prediction 0.959978661008424 Functional Loss - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12694344 chr9:12694344 synonymous SNV . 0 21 hm5C_associated_SNPs_47008 0 0 0 0 1 TYRP1 chr9:12694381 5'GT 12694381 Upstream 38bp
chr2 103121867 103121867 1 + C T SKCM 103121867 + 103121847 103121887 41 TGTCCACTGTGGGCAAGAATCACGAGTGGAACTGGGCCTTC TGTCCACTGTGGGCAAGAATTACGAGTGGAACTGGGCCTTC Direct Loss 0.979930329864953 0 0.54390645 0.53228307 prediction 0.959860659729906 Functional Loss - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103121867 chr2:103121867 nonsynonymous SNV 0.993 4 21 hm5C_associated_SNPs_47009 0 0 0 0 1 SLC9A4 chr2:103121930 5'GT 103121930 Upstream 64bp
chr13 28494600 28494600 1 + C A LUSC 28494600 + 28494580 28494620 41 AGGGAGCCGAGCCGGGCGTCCTGGAGGAGCCCAACCGCGTC AGGGAGCCGAGCCGGGCGTCATGGAGGAGCCCAACCGCGTC Direct Loss 0.97990857676243 0 0.91268694 0.90491253 prediction 0.959817153524861 Functional Loss - PDX1 ENSG00000139515 CDS Human protein_coding chr13:28494600 chr13:28494600 nonsynonymous SNV 0.133 1 21 hm5C_associated_SNPs_47011 0 0 1 0 1 PDX1 chr13:28494681 5'GT 28494681 Upstream 82bp
chr12 111375074 111375074 1 + C A UCEC 111375074 + 111375054 111375094 41 CCAGCAGGGGGCGGTGCTACCTCGGCTCCGCGCAGCCACGG CCAGCAGGGGGCGGTGCTACATCGGCTCCGCGCAGCCACGG Direct Loss 0.979882506082582 0 0.28431112 0.19967332 prediction 0.959765012165164 Functional Loss - LINC01405 ENSG00000185847 ncRNA_exonic Human lincRNA chr12:111375074 chr12:111375074 . . 0 21 hm5C_associated_SNPs_47013 0 0 0 0 1 LINC01405 chr12:111374989 3'AG 111374989 Downstream 86bp
chr22 40801207 40801207 1 + C T rs150525363 40801207 + 40801187 40801227 41 TTCGCCAGCATGGGTAGCATCGGGGTGCCCCGCCTGCGCAG TTCGCCAGCATGGGTAGCATTGGGGTGCCCCGCCTGCGCAG Direct Loss 0.979864138533346 0 0.9704379 0.9574051 prediction 0.959728277066691 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40801207 chr22:40801207 synonymous SNV . 0 21 hm5C_associated_SNPs_47016 0 0 1 0 2 SGSM3 chr22:40801145 3'AG 40801145 Downstream 63bp
chr22 40801207 40801207 1 + C T rs150525363 40801207 + 40801187 40801227 41 TTCGCCAGCATGGGTAGCATCGGGGTGCCCCGCCTGCGCAG TTCGCCAGCATGGGTAGCATTGGGGTGCCCCGCCTGCGCAG Direct Loss 0.979864138533346 0 0.9704379 0.9574051 prediction 0.959728277066691 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40801207 chr22:40801207 synonymous SNV . 0 21 hm5C_associated_SNPs_47016 0 0 1 0 2 SGSM3 chr22:40801288 5'GT 40801288 Upstream 82bp
chr16 1544556 1544556 1 + C T rs569479774 1544556 + 1544536 1544576 41 AGCTGTGGGCCAGCTTCTTCCTGGAGGGCCCGGCGGACCAA AGCTGTGGGCCAGCTTCTTCTTGGAGGGCCCGGCGGACCAA Direct Loss 0.979832765562228 0 0.8797982 0.9126298 prediction 0.959665531124455 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1544556 chr16:1544556 synonymous SNV . 0 21 hm5C_associated_SNPs_47018 0 0 1 0 1 TELO2 chr16:1544617 5'GT 1544617 Upstream 62bp
chr3 186299202 186299202 1 + C T COAD 186299202 + 186299182 186299222 41 CAAGGCAGGCTCCTGGCAAACGGAAGTGCAATTGTCGGCAA CAAGGCAGGCTCCTGGCAAATGGAAGTGCAATTGTCGGCAA Direct Loss 0.979815674035748 0 0.5550258 0.32928604 prediction 0.959631348071497 Functional Loss - DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186299202 chr3:186299202 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_47019 0 0 1 0 1 DNAJB11 chr3:186299160 3'AG 186299160 Downstream 43bp
chr19 1434829 1434829 1 + C T BLCA 1434829 + 1434809 1434849 41 GGGTCCCTCCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCG GGGTCCCTCCGTGCCAGGGTTGGGGGGCCCCCCCGCCGGCG Direct Loss 0.979644076165926 0 0.96609354 0.9490589 prediction 0.959288152331851 Functional Loss - DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434829 chr19:1434829 nonsynonymous SNV 0.955 1 21 hm5C_associated_SNPs_47022 0 0 1 0 1 DAZAP1 chr19:1434736 3'AG 1434736 Downstream 94bp
chr16 19079036 19079036 1 + C G rs529955941 19079036 + 19079016 19079056 41 CCGCCTTTGGCGGCTGCGCCCGGGGGCCCGGCGGTCCCTCT CCGCCTTTGGCGGCTGCGCCGGGGGGCCCGGCGGTCCCTCT Direct Loss 0.979596635722276 0 0.93233323 0.9290378 prediction 0.959193271444553 Functional Loss - COQ7 ENSG00000167186 CDS Human protein_coding chr16:19079036 chr16:19079036 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47024 0 0 1 0 1 COQ7 chr16:19079059 5'GT 19079059 Upstream 24bp
chr16 29825686 29825686 1 + C T CESC 29825686 + 29825666 29825706 41 CTGCAGCAGGGGGACGTGGACGGGGCCCAGCGTCTGGGCCG CTGCAGCAGGGGGACGTGGATGGGGCCCAGCGTCTGGGCCG Direct Loss 0.979578574175664 0 0.9137206 0.9001385 prediction 0.959157148351329 Functional Loss - PRRT2 ENSG00000167371 CDS Human protein_coding chr16:29825686 chr16:29825686 synonymous SNV . 0 21 hm5C_associated_SNPs_47025 1 0 0 0 1 PRRT2 chr16:29825654 3'AG 29825654 Downstream 33bp
chr12 58014803 58014803 1 + C T UCEC 58014803 + 58014783 58014823 41 GTGGGGAATCTGAGCGGAATCGAGAAGGAGCAGCTGGACGC GTGGGGAATCTGAGCGGAATTGAGAAGGAGCAGCTGGACGC Direct Loss 0.979541186107107 0 0.88353765 0.89449525 prediction 0.959082372214213 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58014803 chr12:58014803 synonymous SNV . 0 21 hm5C_associated_SNPs_47029 0 0 1 0 2 SLC26A10 chr12:58014718 3'AG 58014718 Downstream 86bp
chr12 58014803 58014803 1 + C T UCEC 58014803 + 58014783 58014823 41 GTGGGGAATCTGAGCGGAATCGAGAAGGAGCAGCTGGACGC GTGGGGAATCTGAGCGGAATTGAGAAGGAGCAGCTGGACGC Direct Loss 0.979541186107107 0 0.88353765 0.89449525 prediction 0.959082372214213 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58014803 chr12:58014803 synonymous SNV . 0 21 hm5C_associated_SNPs_47029 0 0 1 0 2 SLC26A10 chr12:58014875 5'GT 58014875 Upstream 73bp
chr20 61450608 61450608 1 + C T SKCM 61450608 + 61450588 61450628 41 CCCAGGAAAGCCGGGGAAACCAGGAGAGGCTGGGCTGCCGG CCCAGGAAAGCCGGGGAAACTAGGAGAGGCTGGGCTGCCGG Direct Loss 0.979307502886258 0 0.9299726 0.92619866 prediction 0.958615005772517 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450608 chr20:61450608 nonsynonymous SNV 0.888 2 21 hm5C_associated_SNPs_47038 0 0 1 0 2 COL9A3 chr20:61450574 3'AG 61450574 Downstream 35bp
chr20 61450608 61450608 1 + C T SKCM 61450608 + 61450588 61450628 41 CCCAGGAAAGCCGGGGAAACCAGGAGAGGCTGGGCTGCCGG CCCAGGAAAGCCGGGGAAACTAGGAGAGGCTGGGCTGCCGG Direct Loss 0.979307502886258 0 0.9299726 0.92619866 prediction 0.958615005772517 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450608 chr20:61450608 nonsynonymous SNV 0.888 2 21 hm5C_associated_SNPs_47038 0 0 1 0 2 COL9A3 chr20:61450645 5'GT 61450645 Upstream 38bp
chr17 21075445 21075445 1 + C T LUSC 21075445 + 21075425 21075465 41 CGGCTGCTGCAGTGGGTGCGCGGGAAGGCCTACCTGCGGAA CGGCTGCTGCAGTGGGTGCGTGGGAAGGCCTACCTGCGGAA Direct Loss 0.979299453591796 0 0.88836193 0.9008595 prediction 0.958598907183592 Functional Loss - DHRS7B ENSG00000109016 CDS Human protein_coding chr17:21075445 chr17:21075445 synonymous SNV . 0 21 hm5C_associated_SNPs_47039 0 0 1 0 1 DHRS7B chr17:21075509 5'GT 21075509 Upstream 65bp
chr1 201952238 201952238 1 + C G MESO 201952238 + 201952218 201952258 41 TACCGCGTCGGGGAGGGACCCGGGGTGAGTGCGCCCCAGAC TACCGCGTCGGGGAGGGACCGGGGGTGAGTGCGCCCCAGAC Direct Loss 0.979259666462971 0 0.96095574 0.9576907 prediction 0.958519332925942 Functional Loss - RNPEP ENSG00000176393 CDS Human protein_coding chr1:201952238 chr1:201952238 synonymous SNV . 0 21 hm5C_associated_SNPs_47040 0 0 1 0 1 RNPEP chr1:201952241 5'GT 201952241 Upstream 4bp
chr12 53497419 53497419 1 + C T ACC 53497419 + 53497399 53497439 41 CAGAAGGGCTGGGAGGGGAGCGGGAGCGCCAACCCTGTGGA CAGAAGGGCTGGGAGGGGAGTGGGAGCGCCAACCCTGTGGA Direct Loss 0.979251661933163 0 0.92067736 0.90628076 prediction 0.958503323866325 Functional Loss - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53497419 chr12:53497419 nonsynonymous SNV 0.038 0 21 hm5C_associated_SNPs_47041 0 0 1 0 1 SOAT2 chr12:53497443 5'GT 53497443 Upstream 25bp
chr19 52954474 52954474 1 + C T rs373983368 52954474 + 52954454 52954494 41 GCCTGGGACGCGCGCGTCTTCAGGGTGGAAGCCTGGCGCGC GCCTGGGACGCGCGCGTCTTTAGGGTGGAAGCCTGGCGCGC Direct Loss 0.979152545235025 0 0.9201597 0.90734303 prediction 0.958305090470051 Functional Loss - ZNF534 ENSG00000198633 CDS Human protein_coding chr19:52954474 chr19:52954474 synonymous SNV . 0 21 hm5C_associated_SNPs_47044 0 0 0 0 1 ZNF534 chr19:52954440 3'AG 52954440 Downstream 35bp
chr1 161696531 161696531 1 + C A rs202042884 161696531 + 161696511 161696551 41 TGCTGAGGGTGATGGGTCCGCGGGAGGCCCGCGGCGCGGCG TGCTGAGGGTGATGGGTCCGAGGGAGGCCCGCGGCGCGGCG Direct Loss 0.979018578652839 0 0.9040906 0.90755755 prediction 0.958037157305678 Functional Loss - FCRLB ENSG00000162746 CDS Human protein_coding chr1:161696531 chr1:161696531 synonymous SNV . 0 21 hm5C_associated_SNPs_47047 0 0 0 0 1 FCRLB chr1:161696493 3'AG 161696493 Downstream 39bp
chr16 28943738 28943738 1 + C T SKCM 28943738 + 28943718 28943758 41 CTCAGCAGCTGACCTGGTCTCGGGAGTCCCCGCTTAAACCC CTCAGCAGCTGACCTGGTCTTGGGAGTCCCCGCTTAAACCC Direct Loss 0.979016357808389 0 0.9625019 0.93261075 prediction 0.958032715616778 Functional Loss - CD19 ENSG00000177455 CDS Human protein_coding chr16:28943738 chr16:28943738 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_47048 0 0 0 0 1 CD19 chr16:28943667 3'AG 28943667 Downstream 72bp
chr19 50386145 50386145 1 + C T SKCM 50386145 + 50386125 50386165 41 GCTGAAGAACCGGATCTTCTCGGGGGTGAGTGCCAGGACAG GCTGAAGAACCGGATCTTCTTGGGGGTGAGTGCCAGGACAG Direct Loss 0.978996271806404 0 0.9524003 0.9209316 prediction 0.957992543612808 Functional Loss - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50386145 chr19:50386145 nonsynonymous SNV 0.434 1 21 hm5C_associated_SNPs_47049 0 0 1 0 2 TBC1D17 chr19:50386149 5'GT 50386149 Upstream 5bp
chr19 50386145 50386145 1 + C T SKCM 50386145 + 50386125 50386165 41 GCTGAAGAACCGGATCTTCTCGGGGGTGAGTGCCAGGACAG GCTGAAGAACCGGATCTTCTTGGGGGTGAGTGCCAGGACAG Direct Loss 0.978996271806404 0 0.9524003 0.9209316 prediction 0.957992543612808 Functional Loss - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50386145 chr19:50386145 nonsynonymous SNV 0.434 1 21 hm5C_associated_SNPs_47049 0 0 1 0 2 TBC1D17 chr19:50386230 5'GT 50386230 Upstream 86bp
chr20 62521229 62521229 1 + C T COAD 62521229 + 62521209 62521249 41 GTTGTGGGTGACAGAGAGAACGGCAGTGACAACCTCCCTTC GTTGTGGGTGACAGAGAGAATGGCAGTGACAACCTCCCTTC Direct Loss 0.97898914017372 0 0.44184285 0.54312396 prediction 0.95797828034744 Functional Loss - TPD52L2 ENSG00000101150 CDS Human protein_coding chr20:62521229 chr20:62521229 synonymous SNV 0.971 0 21 hm5C_associated_SNPs_47050 0 0 1 0 1 TPD52L2 chr20:62521203 3'AG 62521203 Downstream 27bp
chr17 6929827 6929827 1 + C T GBM 6929827 + 6929807 6929847 41 GGCTGTGGCAGGGTGCTCATCGGGGCTGGACTCCTTGGTTC GGCTGTGGCAGGGTGCTCATTGGGGCTGGACTCCTTGGTTC Direct Loss 0.97878206617716 0 0.9520149 0.9321405 prediction 0.95756413235432 Functional Loss - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6929827 chr17:6929827 nonsynonymous SNV 0.334 0 21 hm5C_associated_SNPs_47054 0 0 0 0 1 BCL6B chr17:6929776 3'AG 6929776 Downstream 52bp
chr20 35507522 35507522 1 + C A CESC 35507522 + 35507502 35507542 41 CGTCAAGGGACGGTTTCAGCCTGCAGAGCCTGTACCGGCGG CGTCAAGGGACGGTTTCAGCATGCAGAGCCTGTACCGGCGG Direct Loss 0.978777512900441 0 0.07250008 0.09172776 prediction 0.957555025800882 Functional Loss - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35507522 chr20:35507522 nonsynonymous SNV 0.968 4 21 hm5C_associated_SNPs_47056 0 0 0 0 2 TLDC2 chr20:35507444 3'AG 35507444 Downstream 79bp
chr20 35507522 35507522 1 + C A CESC 35507522 + 35507502 35507542 41 CGTCAAGGGACGGTTTCAGCCTGCAGAGCCTGTACCGGCGG CGTCAAGGGACGGTTTCAGCATGCAGAGCCTGTACCGGCGG Direct Loss 0.978777512900441 0 0.07250008 0.09172776 prediction 0.957555025800882 Functional Loss - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35507522 chr20:35507522 nonsynonymous SNV 0.968 4 21 hm5C_associated_SNPs_47056 0 0 0 0 2 TLDC2 chr20:35507596 5'GT 35507596 Upstream 75bp
chr12 48358151 48358151 1 + C T LUAD 48358151 + 48358131 48358171 41 TTCCCATATGTGGAATTCACCGGGAGAGATAGCATCACCTG TTCCCATATGTGGAATTCACTGGGAGAGATAGCATCACCTG Direct Loss 0.978741400762873 0 0.92626846 0.90387845 prediction 0.957482801525746 Functional Loss - TMEM106C ENSG00000134291 CDS Human protein_coding chr12:48358151 chr12:48358151 synonymous SNV . 0 21 hm5C_associated_SNPs_47058 0 0 1 0 1 TMEM106C chr12:48358206 5'GT 48358206 Upstream 56bp
chr1 32671824 32671824 1 + C G OV 32671824 + 32671804 32671844 41 CTGAGTATGAGGCGATTGTACGAGAGGTCGAGGGCGACCTG CTGAGTATGAGGCGATTGTAGGAGAGGTCGAGGGCGACCTG Direct Loss 0.978599204038639 0 0.9079529 0.9115858 prediction 0.957198408077279 Functional Loss - IQCC ENSG00000160051 CDS Human protein_coding chr1:32671824 chr1:32671824 nonsynonymous SNV 0.982 0 21 hm5C_associated_SNPs_47066 0 0 0 0 2 IQCC chr1:32671755 3'AG 32671755 Downstream 70bp
chr1 32671824 32671824 1 + C G OV 32671824 + 32671804 32671844 41 CTGAGTATGAGGCGATTGTACGAGAGGTCGAGGGCGACCTG CTGAGTATGAGGCGATTGTAGGAGAGGTCGAGGGCGACCTG Direct Loss 0.978599204038639 0 0.9079529 0.9115858 prediction 0.957198408077279 Functional Loss - IQCC ENSG00000160051 CDS Human protein_coding chr1:32671824 chr1:32671824 nonsynonymous SNV 0.982 0 21 hm5C_associated_SNPs_47066 0 0 0 0 2 IQCC chr1:32671898 5'GT 32671898 Upstream 75bp
chr11 400063 400063 1 + C T CESC 400063 + 400043 400083 41 CCTGGTGTTGAGCCCCCTGTCGGGGGCTGGGGGTCCCCCCC CCTGGTGTTGAGCCCCCTGTTGGGGGCTGGGGGTCCCCCCC Direct Loss 0.978576053665659 0 0.9604398 0.934307 prediction 0.957152107331318 Functional Loss - PKP3 ENSG00000184363 CDS Human protein_coding chr11:400063 chr11:400063 nonsynonymous SNV 0.358 4 21 hm5C_associated_SNPs_47068 0 0 1 0 2 PKP3 chr11:399967 3'AG 399967 Downstream 97bp
chr11 400063 400063 1 + C T CESC 400063 + 400043 400083 41 CCTGGTGTTGAGCCCCCTGTCGGGGGCTGGGGGTCCCCCCC CCTGGTGTTGAGCCCCCTGTTGGGGGCTGGGGGTCCCCCCC Direct Loss 0.978576053665659 0 0.9604398 0.934307 prediction 0.957152107331318 Functional Loss - PKP3 ENSG00000184363 CDS Human protein_coding chr11:400063 chr11:400063 nonsynonymous SNV 0.358 4 21 hm5C_associated_SNPs_47068 0 0 1 0 2 PKP3 chr11:400141 5'GT 400141 Upstream 79bp
chr20 25388436 25388436 1 + C T rs549010664 25388436 + 25388416 25388456 41 GCTGGTGGTTGGCAAGGCCGCGGGAGTGGGAAGCGTCCGCC GCTGGTGGTTGGCAAGGCCGTGGGAGTGGGAAGCGTCCGCC Direct Loss 0.978553834659012 0 0.9061183 0.88456094 prediction 0.957107669318023 Functional Loss - GINS1 ENSG00000101003 UTR5 Human protein_coding chr20:25388436 chr20:25388436 . . 0 21 hm5C_associated_SNPs_47069 0 0 1 0 1 GINS1 chr20:25388531 5'GT 25388531 Upstream 96bp
chr7 107303845 107303845 1 + C T BLCA 107303845 + 107303825 107303865 41 GCTGCTTAGTGACGTCATTTCGGGAGTTAGTACTGGGCTAG GCTGCTTAGTGACGTCATTTTGGGAGTTAGTACTGGGCTAG Direct Loss 0.978501453748082 0 0.9200477 0.8544563 prediction 0.957002907496163 Functional Loss - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107303845 chr7:107303845 nonsynonymous SNV 0.686 5 21 hm5C_associated_SNPs_47072 1 0 0 0 1 SLC26A4 chr7:107303880 5'GT 107303880 Upstream 36bp
chr1 150484918 150484918 1 + C T UCEC 150484918 + 150484898 150484938 41 GCCACCCTCCCAGCCCTACTCGGGATGAGTGCTTTGCCCGT GCCACCCTCCCAGCCCTACTTGGGATGAGTGCTTTGCCCGT Direct Loss 0.978278404809617 0 0.9517625 0.9208746 prediction 0.956556809619235 Functional Loss - ECM1 ENSG00000143369 CDS Human protein_coding chr1:150484918 chr1:150484918 nonsynonymous SNV 0.721 5 21 hm5C_associated_SNPs_47081 0 0 1 0 1 ECM1 chr1:150484828 3'AG 150484828 Downstream 91bp
chr14 31091549 31091549 1 + C T UCEC 31091549 + 31091529 31091569 41 GCTCGTGGGAGCCAAGATGGCGGCGGCGGCGGCAGCGACAG GCTCGTGGGAGCCAAGATGGTGGCGGCGGCGGCAGCGACAG Direct Loss 0.97824011233897 0 0.8966569 0.8526311 prediction 0.95648022467794 Functional Loss - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31091549 chr14:31091549 nonsynonymous SNV 0.522 2 21 hm5C_associated_SNPs_47083 0 0 1 0 1 SCFD1 chr14:31091605 5'GT 31091605 Upstream 57bp
chr7 39247040 39247040 1 + C T UCEC 39247040 + 39247020 39247060 41 TGCTGTGGCCGGCGTGATGCCGGGAGGCCCCCCAGCCCTCA TGCTGTGGCCGGCGTGATGCTGGGAGGCCCCCCAGCCCTCA Direct Loss 0.978222187411487 0 0.9092413 0.89721406 prediction 0.956444374822973 Functional Loss - POU6F2 ENSG00000106536 CDS Human protein_coding chr7:39247040 chr7:39247040 nonsynonymous SNV 0.954 2 21 hm5C_associated_SNPs_47086 0 0 0 0 1 POU6F2 chr7:39246991 3'AG 39246991 Downstream 50bp
chr19 16337279 16337279 1 + C T BLCA 16337279 + 16337259 16337299 41 AGCGAGATCGTGGGCTCCATCAAGATGCGAGTCTTCCTCTC AGCGAGATCGTGGGCTCCATTAAGATGCGAGTCTTCCTCTC Direct Loss 0.978028280411795 0 0.9091754 0.880914 prediction 0.956056560823591 Functional Loss - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16337279 chr19:16337279 synonymous SNV . 0 21 hm5C_associated_SNPs_47092 0 0 1 0 2 AP1M1 chr19:16337232 3'AG 16337232 Downstream 48bp
chr19 16337279 16337279 1 + C T BLCA 16337279 + 16337259 16337299 41 AGCGAGATCGTGGGCTCCATCAAGATGCGAGTCTTCCTCTC AGCGAGATCGTGGGCTCCATTAAGATGCGAGTCTTCCTCTC Direct Loss 0.978028280411795 0 0.9091754 0.880914 prediction 0.956056560823591 Functional Loss - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16337279 chr19:16337279 synonymous SNV . 0 21 hm5C_associated_SNPs_47092 0 0 1 0 2 AP1M1 chr19:16337358 5'GT 16337358 Upstream 80bp
chr6 34738120 34738120 1 + C T SKCM 34738120 + 34738100 34738140 41 CCCCATATGGGGGGCCCTCCCATGATGCCAATGATGGGCCC CCCCATATGGGGGGCCCTCCTATGATGCCAATGATGGGCCC Direct Loss 0.977989730846176 0 0.3695476 0.23396114 prediction 0.955979461692352 Functional Loss - SNRPC ENSG00000124562 CDS Human protein_coding chr6:34738120 chr6:34738120 synonymous SNV . 0 21 hm5C_associated_SNPs_47095 0 0 1 0 2 SNRPC chr6:34738068 3'AG 34738068 Downstream 53bp
chr6 34738120 34738120 1 + C T SKCM 34738120 + 34738100 34738140 41 CCCCATATGGGGGGCCCTCCCATGATGCCAATGATGGGCCC CCCCATATGGGGGGCCCTCCTATGATGCCAATGATGGGCCC Direct Loss 0.977989730846176 0 0.3695476 0.23396114 prediction 0.955979461692352 Functional Loss - SNRPC ENSG00000124562 CDS Human protein_coding chr6:34738120 chr6:34738120 synonymous SNV . 0 21 hm5C_associated_SNPs_47095 0 0 1 0 2 SNRPC chr6:34738172 5'GT 34738172 Upstream 53bp
chr1 111862916 111862916 1 + C A LUSC 111862916 + 111862896 111862936 41 CGGGAGCGGGAGTAGCAGCTCTGGAGGCAGCTCGGGAGGCA CGGGAGCGGGAGTAGCAGCTATGGAGGCAGCTCGGGAGGCA Direct Loss 0.97797134782985 0 0.59235525 0.74052453 prediction 0.955942695659701 Functional Loss - CHIA ENSG00000134216 CDS Human protein_coding chr1:111862916 chr1:111862916 nonsynonymous SNV 0.715 1 21 hm5C_associated_SNPs_47096 0 0 0 0 1 CHIA chr1:111862835 3'AG 111862835 Downstream 82bp
chr5 1244750 1244750 1 + C T rs562326695 1244750 + 1244730 1244770 41 GATGACATTGCGTGGATGACCGGGAGGCGGCCCAGCCCCTA GATGACATTGCGTGGATGACTGGGAGGCGGCCCAGCCCCTA Direct Loss 0.977791068808437 0 0.9174863 0.9100899 prediction 0.955582137616874 Functional Loss - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1244750 chr5:1244750 synonymous SNV . 0 21 hm5C_associated_SNPs_47101 0 0 0 0 1 SLC6A18 chr5:1244723 3'AG 1244723 Downstream 28bp
chr21 41143078 41143078 1 + C A HNSC 41143078 + 41143058 41143098 41 ACTTTGACTTGCGTGGCTACCTGGAAGAGCCTGAAGGCCCG ACTTTGACTTGCGTGGCTACATGGAAGAGCCTGAAGGCCCG Direct Loss 0.977568170766164 0 0.38945884 0.15896079 prediction 0.955136341532328 Functional Loss - IGSF5 ENSG00000183067 CDS Human protein_coding chr21:41143078 chr21:41143078 synonymous SNV . 0 21 hm5C_associated_SNPs_47107 0 0 0 0 1 IGSF5 chr21:41143142 5'GT 41143142 Upstream 65bp
chr19 16790859 16790859 1 + C T rs730120 16790859 + 16790839 16790879 41 TGCGCCATGCTGCATTGCTTCGGGAGCTACATCCTGGCTGA TGCGCCATGCTGCATTGCTTTGGGAGCTACATCCTGGCTGA Direct Loss 0.977482950798535 0 0.93341464 0.91368586 prediction 0.95496590159707 Functional Loss - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16790859 chr19:16790859 synonymous SNV . 0 21 hm5C_associated_SNPs_47111 0 0 1 0 2 TMEM38A chr19:16790795 3'AG 16790795 Downstream 65bp
chr19 16790859 16790859 1 + C T rs730120 16790859 + 16790839 16790879 41 TGCGCCATGCTGCATTGCTTCGGGAGCTACATCCTGGCTGA TGCGCCATGCTGCATTGCTTTGGGAGCTACATCCTGGCTGA Direct Loss 0.977482950798535 0 0.93341464 0.91368586 prediction 0.95496590159707 Functional Loss - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16790859 chr19:16790859 synonymous SNV . 0 21 hm5C_associated_SNPs_47111 0 0 1 0 2 TMEM38A chr19:16790951 5'GT 16790951 Upstream 93bp
chr6 36929690 36929690 1 + C T SKCM 36929690 + 36929670 36929710 41 TGAAGGGGAAACGGCCCTACCAGGAGGGGACTCCGTGCTCC TGAAGGGGAAACGGCCCTACTAGGAGGGGACTCCGTGCTCC Direct Loss 0.977463324165266 0 0.9200773 0.9020635 prediction 0.954926648330532 Functional Loss - PI16 ENSG00000164530 CDS Human protein_coding chr6:36929690 chr6:36929690 stopgain 0.960 0 21 hm5C_associated_SNPs_47114 0 0 0 0 2 PI16 chr6:36929662 3'AG 36929662 Downstream 29bp
chr6 36929690 36929690 1 + C T SKCM 36929690 + 36929670 36929710 41 TGAAGGGGAAACGGCCCTACCAGGAGGGGACTCCGTGCTCC TGAAGGGGAAACGGCCCTACTAGGAGGGGACTCCGTGCTCC Direct Loss 0.977463324165266 0 0.9200773 0.9020635 prediction 0.954926648330532 Functional Loss - PI16 ENSG00000164530 CDS Human protein_coding chr6:36929690 chr6:36929690 stopgain 0.960 0 21 hm5C_associated_SNPs_47114 0 0 0 0 2 PI16 chr6:36929750 5'GT 36929750 Upstream 61bp
chr19 52084728 52084728 1 + C T COAD 52084728 + 52084708 52084748 41 CTGCCCAGAGATGCCTGTACCGGGATGTGATGCTGGAGCTC CTGCCCAGAGATGCCTGTACTGGGATGTGATGCTGGAGCTC Direct Loss 0.977437978614431 0 0.9411011 0.9171252 prediction 0.954875957228862 Functional Loss - ZNF175 ENSG00000105497 CDS Human protein_coding chr19:52084728 chr19:52084728 nonsynonymous SNV 0.501 0 21 hm5C_associated_SNPs_47115 0 0 1 0 2 ZNF175 chr19:52084644 3'AG 52084644 Downstream 85bp
chr19 52084728 52084728 1 + C T COAD 52084728 + 52084708 52084748 41 CTGCCCAGAGATGCCTGTACCGGGATGTGATGCTGGAGCTC CTGCCCAGAGATGCCTGTACTGGGATGTGATGCTGGAGCTC Direct Loss 0.977437978614431 0 0.9411011 0.9171252 prediction 0.954875957228862 Functional Loss - ZNF175 ENSG00000105497 CDS Human protein_coding chr19:52084728 chr19:52084728 nonsynonymous SNV 0.501 0 21 hm5C_associated_SNPs_47115 0 0 1 0 2 ZNF175 chr19:52084770 5'GT 52084770 Upstream 43bp
chr10 50835788 50835788 1 + C T STAD 50835788 + 50835768 50835808 41 ATTGGCCTGCTGACGTCTGACGGGAGGAGCGAGTGGGCCGA ATTGGCCTGCTGACGTCTGATGGGAGGAGCGAGTGGGCCGA Direct Loss 0.977384469864197 0 0.90716696 0.90134925 prediction 0.954768939728393 Functional Loss - CHAT ENSG00000070748 CDS Human protein_coding chr10:50835788 chr10:50835788 synonymous SNV . 0 21 hm5C_associated_SNPs_47117 0 0 0 0 1 CHAT chr10:50835831 5'GT 50835831 Upstream 44bp
chr6 109274522 109274522 1 + C T CESC 109274522 + 109274502 109274542 41 CCCGGTGCTGGCCGCCAACCCGGGGATAGTGGGCCTGCTCC CCCGGTGCTGGCCGCCAACCTGGGGATAGTGGGCCTGCTCC Direct Loss 0.977352491445955 0 0.9480864 0.9111906 prediction 0.95470498289191 Functional Loss - ARMC2 ENSG00000118690 CDS Human protein_coding chr6:109274522 chr6:109274522 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47118 0 0 0 0 1 ARMC2 chr6:109274554 5'GT 109274554 Upstream 33bp
chr17 62076394 62076394 1 + C T UCEC 62076394 + 62076374 62076414 41 GCTGCTGAGTCGCCTGGTGGCTGGAGCGCTGCAGCCCCGGC GCTGCTGAGTCGCCTGGTGGTTGGAGCGCTGCAGCCCCGGC Direct Loss 0.977033001338467 0 0.51868296 0.40153176 prediction 0.954066002676935 Functional Loss - PRR29 ENSG00000224383 CDS Human protein_coding chr17:62076394 chr17:62076394 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_47129 0 0 0 0 2 PRR29 chr17:62076328 3'AG 62076328 Downstream 67bp
chr17 62076394 62076394 1 + C T UCEC 62076394 + 62076374 62076414 41 GCTGCTGAGTCGCCTGGTGGCTGGAGCGCTGCAGCCCCGGC GCTGCTGAGTCGCCTGGTGGTTGGAGCGCTGCAGCCCCGGC Direct Loss 0.977033001338467 0 0.51868296 0.40153176 prediction 0.954066002676935 Functional Loss - PRR29 ENSG00000224383 CDS Human protein_coding chr17:62076394 chr17:62076394 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_47129 0 0 0 0 2 PRR29 chr17:62076434 5'GT 62076434 Upstream 41bp
chr4 81952673 81952673 1 + C T GBM 81952673 + 81952653 81952693 41 CGGCCCGGACACCGGGCTCCCTGGAGGGAGGCTCGCAGCCC CGGCCCGGACACCGGGCTCCTTGGAGGGAGGCTCGCAGCCC Direct Loss 0.976990776227003 0 0.88262635 0.892491 prediction 0.953981552454006 Functional Loss - BMP3 ENSG00000152785 CDS Human protein_coding chr4:81952673 chr4:81952673 synonymous SNV . 0 21 hm5C_associated_SNPs_47133 0 0 0 0 1 BMP3 chr4:81952754 5'GT 81952754 Upstream 82bp
chr13 37580090 37580090 1 + C A rs140108815 37580090 + 37580070 37580110 41 TCTACCACCCCTGTGTTCATCGAGATTCCGGTCTGGACCTC TCTACCACCCCTGTGTTCATAGAGATTCCGGTCTGGACCTC Direct Loss 0.97694656376672 0 0.87946653 0.5160975 prediction 0.953893127533441 Functional Loss - EXOSC8 ENSG00000120699 CDS Human protein_coding chr13:37580090 chr13:37580090 stopgain 0.993 1 21 hm5C_associated_SNPs_47137 0 0 1 0 2 EXOSC8 chr13:37580057 3'AG 37580057 Downstream 34bp
chr13 37580090 37580090 1 + C A rs140108815 37580090 + 37580070 37580110 41 TCTACCACCCCTGTGTTCATCGAGATTCCGGTCTGGACCTC TCTACCACCCCTGTGTTCATAGAGATTCCGGTCTGGACCTC Direct Loss 0.97694656376672 0 0.87946653 0.5160975 prediction 0.953893127533441 Functional Loss - EXOSC8 ENSG00000120699 CDS Human protein_coding chr13:37580090 chr13:37580090 stopgain 0.993 1 21 hm5C_associated_SNPs_47137 0 0 1 0 2 EXOSC8 chr13:37580162 5'GT 37580162 Upstream 73bp
chr12 96350685 96350685 1 + C T HNSC 96350685 + 96350665 96350705 41 GCGTGATTGAGCGCGCCCGGCGGGAGCTGGACATCGGCATC GCGTGATTGAGCGCGCCCGGTGGGAGCTGGACATCGGCATC Direct Loss 0.97691370052111 0 0.8683318 0.75789356 prediction 0.95382740104222 Functional Loss - AMDHD1 ENSG00000139344 CDS Human protein_coding chr12:96350685 chr12:96350685 nonsynonymous SNV 0.230 3 21 hm5C_associated_SNPs_47138 0 0 1 0 1 AMDHD1 chr12:96350740 5'GT 96350740 Upstream 56bp
chr17 46628467 46628467 1 - G C LUSC 46628467 - 46628447 46628487 41 GGGGGCGGTGGCGGCGGCGGCGGGGGAGGGGACAAGAGCCC GGGGGCGGTGGCGGCGGCGGGGGGGGAGGGGACAAGAGCCC Direct Loss 0.976905826305231 0 0.93517935 0.93512547 prediction 0.953811652610463 Functional Loss - HOXB3 ENSG00000120093 CDS Human protein_coding chr17:46628467 chr17:46628467 synonymous SNV . 0 21 hm5C_associated_SNPs_47139 0 0 1 0 1 HOXB3 chr17:46628543 3'AG 46628543 Downstream 77bp
chr19 18499151 18499151 1 + C T rs1059022 18499151 + 18499131 18499171 41 ATCTCTCGGGCCGCCCTTCCCGAGGGGCTCCCCGAGGCCTC ATCTCTCGGGCCGCCCTTCCTGAGGGGCTCCCCGAGGCCTC Direct Loss 0.976751981544077 0 0.9654386 0.9552891 prediction 0.953503963088154 Functional Loss - GDF15 ENSG00000130513 CDS Human protein_coding chr19:18499151 chr19:18499151 synonymous SNV . 0 21 hm5C_associated_SNPs_47144 0 0 1 0 1 GDF15 chr19:18499096 3'AG 18499096 Downstream 56bp
chrX 79277874 79277874 1 + C T CESC 79277874 + 79277854 79277894 41 AGGCGGAGCAGCCTGAGCTGCGGGAGAAAAAGGGCGGAGAG AGGCGGAGCAGCCTGAGCTGTGGGAGAAAAAGGGCGGAGAG Direct Loss 0.976750156818991 0 0.9087479 0.8608136 prediction 0.953500313637982 Functional Loss - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79277874 chrX:79277874 nonsynonymous SNV 0.503 1 21 hm5C_associated_SNPs_47145 0 0 0 0 1 TBX22 chrX:79277943 5'GT 79277943 Upstream 70bp
chr6 393188 393188 1 + C T UCEC 393188 + 393168 393208 41 GGCGGCCGAGGCGGAGAGTTCGGCATGAGCGCGGTGAGCTG GGCGGCCGAGGCGGAGAGTTTGGCATGAGCGCGGTGAGCTG Direct Loss 0.976710891255296 0 0.88545525 0.6766884 prediction 0.953421782510592 Functional Loss - IRF4 ENSG00000137265 CDS Human protein_coding chr6:393188 chr6:393188 synonymous SNV . 0 21 hm5C_associated_SNPs_47147 0 0 0 0 1 IRF4 chr6:393098 3'AG 393098 Downstream 91bp
chr11 67256782 67256782 1 + C T SKCM 67256782 + 67256762 67256802 41 GCCAAGAGTCTCCGCAACATCGCGGTGGGCAAGGACCCCCT GCCAAGAGTCTCCGCAACATTGCGGTGGGCAAGGACCCCCT Direct Loss 0.976702882291994 0 0.89253604 0.83700436 prediction 0.953405764583988 Functional Loss - AIP ENSG00000110711 CDS Human protein_coding chr11:67256782 chr11:67256782 synonymous SNV . 0 21 hm5C_associated_SNPs_47148 0 0 1 0 1 AIP chr11:67256738 3'AG 67256738 Downstream 45bp
chr20 61442882 61442882 1 + C T UCEC 61442882 + 61442862 61442902 41 GAGCTCATGCTGGGCTTCTACGGGATCCGGCTGGAGGACCG GAGCTCATGCTGGGCTTCTATGGGATCCGGCTGGAGGACCG Direct Loss 0.976679901581202 0 0.8800378 0.7868799 prediction 0.953359803162404 Functional Loss - OGFR ENSG00000060491 CDS Human protein_coding chr20:61442882 chr20:61442882 synonymous SNV . 0 21 hm5C_associated_SNPs_47151 0 0 1 0 2 OGFR chr20:61442814 3'AG 61442814 Downstream 69bp
chr20 61442882 61442882 1 + C T UCEC 61442882 + 61442862 61442902 41 GAGCTCATGCTGGGCTTCTACGGGATCCGGCTGGAGGACCG GAGCTCATGCTGGGCTTCTATGGGATCCGGCTGGAGGACCG Direct Loss 0.976679901581202 0 0.8800378 0.7868799 prediction 0.953359803162404 Functional Loss - OGFR ENSG00000060491 CDS Human protein_coding chr20:61442882 chr20:61442882 synonymous SNV . 0 21 hm5C_associated_SNPs_47151 0 0 1 0 2 OGFR chr20:61442962 5'GT 61442962 Upstream 81bp
chr6 22146924 22146924 1 - G A ESCA 22146924 - 22146904 22146944 41 GGCGAAGCCCAGGCGGGAGACGGCAGGAGCAGCTCAGGTAA GGCGAAGCCCAGGCGGGAGATGGCAGGAGCAGCTCAGGTAA Direct Loss 0.976552556847725 0 0.74352705 0.7500069 prediction 0.953105113695451 Functional Loss - NBAT1 ENSG00000260455;ENSG00000272168 ncRNA_exonic Human other chr6:22146924 chr6:22146924 . . 0 21 hm5C_associated_SNPs_47155 0 0 0 0 2 NBAT1 chr6:22146908 5'GT 22146908 Upstream 17bp
chr6 22146924 22146924 1 - G A ESCA 22146924 - 22146904 22146944 41 GGCGAAGCCCAGGCGGGAGACGGCAGGAGCAGCTCAGGTAA GGCGAAGCCCAGGCGGGAGATGGCAGGAGCAGCTCAGGTAA Direct Loss 0.976552556847725 0 0.74352705 0.7500069 prediction 0.953105113695451 Functional Loss - NBAT1 ENSG00000260455;ENSG00000272168 ncRNA_exonic Human other chr6:22146924 chr6:22146924 . . 0 21 hm5C_associated_SNPs_47155 0 0 0 0 2 NBAT1 chr6:22146980 3'AG 22146980 Downstream 57bp
chr1 158325689 158325689 1 + C T HNSC 158325689 + 158325669 158325709 41 GCAGCTTGTGTGCCATGTCTCAGGATTCTACCCAAAGCCCG GCAGCTTGTGTGCCATGTCTTAGGATTCTACCCAAAGCCCG Direct Loss 0.976524789369344 0 0.9167497 0.61787516 prediction 0.953049578738689 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325689 chr1:158325689 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_47158 0 0 0 0 1 CD1E chr1:158325730 5'GT 158325730 Upstream 42bp
chr17 78219973 78219973 1 + C T UCEC 78219973 + 78219953 78219993 41 GACAGCCGTGAACGCTCAGTCGGGGGTGTGCACCCCGGCGG GACAGCCGTGAACGCTCAGTTGGGGGTGTGCACCCCGGCGG Direct Loss 0.976487499772932 0 0.9553478 0.9203006 prediction 0.952974999545865 Functional Loss - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78219973 chr17:78219973 nonsynonymous SNV 0.594 4 21 hm5C_associated_SNPs_47159 0 0 1 0 2 SLC26A11 chr17:78219953 3'AG 78219953 Downstream 21bp
chr17 78219973 78219973 1 + C T UCEC 78219973 + 78219953 78219993 41 GACAGCCGTGAACGCTCAGTCGGGGGTGTGCACCCCGGCGG GACAGCCGTGAACGCTCAGTTGGGGGTGTGCACCCCGGCGG Direct Loss 0.976487499772932 0 0.9553478 0.9203006 prediction 0.952974999545865 Functional Loss - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78219973 chr17:78219973 nonsynonymous SNV 0.594 4 21 hm5C_associated_SNPs_47159 0 0 1 0 2 SLC26A11 chr17:78220008 5'GT 78220008 Upstream 36bp
chr19 8550572 8550572 1 + C T rs76937953 8550572 + 8550552 8550592 41 GCCGGCATGGAGCGCATGGGCGCGGGCCTGGGCCACGGCAT GCCGGCATGGAGCGCATGGGTGCGGGCCTGGGCCACGGCAT Direct Loss 0.97645637566316 0 0.87091684 0.7824731 prediction 0.952912751326321 Functional Loss - HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8550572 chr19:8550572 synonymous SNV . 0 21 hm5C_associated_SNPs_47160 0 0 1 0 1 HNRNPM chr19:8550487 3'AG 8550487 Downstream 86bp
chr11 118889911 118889911 1 + C T rs139864805 118889911 + 118889891 118889931 41 AATGGCAGGTACACGGCCGACGGGAAAGAGGTGCTGGAGTA AATGGCAGGTACACGGCCGATGGGAAAGAGGTGCTGGAGTA Direct Loss 0.976426119146266 0 0.8759381 0.6944727 prediction 0.952852238292531 Functional Loss - TRAPPC4 ENSG00000196655 CDS Human protein_coding chr11:118889911 chr11:118889911 synonymous SNV . 0 21 hm5C_associated_SNPs_47162 0 0 1 0 2 TRAPPC4 chr11:118889853 3'AG 118889853 Downstream 59bp
chr11 118889911 118889911 1 + C T rs139864805 118889911 + 118889891 118889931 41 AATGGCAGGTACACGGCCGACGGGAAAGAGGTGCTGGAGTA AATGGCAGGTACACGGCCGATGGGAAAGAGGTGCTGGAGTA Direct Loss 0.976426119146266 0 0.8759381 0.6944727 prediction 0.952852238292531 Functional Loss - TRAPPC4 ENSG00000196655 CDS Human protein_coding chr11:118889911 chr11:118889911 synonymous SNV . 0 21 hm5C_associated_SNPs_47162 0 0 1 0 2 TRAPPC4 chr11:118889920 5'GT 118889920 Upstream 10bp
chr18 56887555 56887555 1 + C T UCEC 56887555 + 56887535 56887575 41 TGGTCCTCTGCCTGGCGCCCCGGGGGCGAGCGGTCCCGCTG TGGTCCTCTGCCTGGCGCCCTGGGGGCGAGCGGTCCCGCTG Direct Loss 0.976371785421021 0 0.917357 0.89448607 prediction 0.952743570842041 Functional Loss - GRP ENSG00000134443 CDS Human protein_coding chr18:56887555 chr18:56887555 nonsynonymous SNV 0.933 2 21 hm5C_associated_SNPs_47165 0 0 0 0 1 GRP chr18:56887636 5'GT 56887636 Upstream 82bp
chr15 84909433 84909433 1 + C T UCEC 84909433 + 84909413 84909453 41 TGCAGGAGCTGGAGAGGCTGCGGGAGCTGGAGAGGCTGCGG TGCAGGAGCTGGAGAGGCTGTGGGAGCTGGAGAGGCTGCGG Direct Loss 0.976293835012894 0 0.9130931 0.90097296 prediction 0.952587670025787 Functional Loss - GOLGA6L4 ENSG00000184206 CDS Human protein_coding chr15:84909433 chr15:84909433 nonsynonymous SNV 0.207 1 21 hm5C_associated_SNPs_47169 0 0 0 0 1 GOLGA6L4 chr15:84909346 3'AG 84909346 Downstream 88bp
chr10 54074385 54074385 1 + C A LUAD 54074385 + 54074365 54074405 41 CTCTGCAGTCAGCGCCGCGCCGGGAATCCTGTACCCGGGCG CTCTGCAGTCAGCGCCGCGCAGGGAATCCTGTACCCGGGCG Direct Loss 0.976233316631566 0 0.879871 0.9012669 prediction 0.952466633263133 Functional Loss - DKK1 ENSG00000107984 CDS Human protein_coding chr10:54074385 chr10:54074385 nonsynonymous SNV 0.330 2 21 hm5C_associated_SNPs_47170 0 0 1 0 1 DKK1 chr10:54074437 5'GT 54074437 Upstream 53bp
chr15 68119245 68119245 1 + C A rs202009740 68119245 + 68119225 68119265 41 AGCTAGTGGCCCGGCGGGCCCAGGAGGGCCCGGTGGCGGCG AGCTAGTGGCCCGGCGGGCCAAGGAGGGCCCGGTGGCGGCG Direct Loss 0.976162872008897 0 0.90281117 0.8093269 prediction 0.952325744017795 Functional Loss - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68119245 chr15:68119245 nonsynonymous SNV 0.224 3 21 hm5C_associated_SNPs_47176 0 0 0 0 1 SKOR1 chr15:68119202 3'AG 68119202 Downstream 44bp
chr1 156703888 156703888 1 + C T rs73000801 156703888 + 156703868 156703908 41 GTGAGGAGCTTCTGCTTCCACTGGAGAACCCGTGTCAGGGC GTGAGGAGCTTCTGCTTCCATTGGAGAACCCGTGTCAGGGC Direct Loss 0.976048407862913 0 0.24450949 0.20984167 prediction 0.952096815725825 Functional Loss - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156703888 chr1:156703888 synonymous SNV . 0 21 hm5C_associated_SNPs_47179 0 0 1 0 1 RRNAD1 chr1:156703801 3'AG 156703801 Downstream 88bp
chr3 122296630 122296630 1 + C T CESC 122296630 + 122296610 122296650 41 AGCCGGACGAGATCGGGAGGCGGGGAGCGTGCTGCCGGCCG AGCCGGACGAGATCGGGAGGTGGGGAGCGTGCTGCCGGCCG Direct Loss 0.976045095107556 0 0.9059739 0.8852695 prediction 0.952090190215111 Functional Loss - PARP15 ENSG00000173200 CDS Human protein_coding chr3:122296630 chr3:122296630 nonsynonymous SNV 0.025 0 21 hm5C_associated_SNPs_47180 0 0 0 0 1 PARP15 chr3:122296700 5'GT 122296700 Upstream 71bp
chr20 2375157 2375157 1 + C A LUAD 2375157 + 2375137 2375177 41 ATGGCGCTGCCCACCACACCCAGGAGTACCCCTGCCCTGAG ATGGCGCTGCCCACCACACCAAGGAGTACCCCTGCCCTGAG Direct Loss 0.97586583376286 0 0.9494692 0.9317703 prediction 0.95173166752572 Functional Loss - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2375157 chr20:2375157 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_47185 0 0 0 0 1 TGM6 chr20:2375098 3'AG 2375098 Downstream 60bp
chr8 22447179 22447179 1 + C A UCEC 22447179 + 22447159 22447199 41 TCAAGATGCTGCAGGAAAATCGCGAGGGACGGGCGGCCCCC TCAAGATGCTGCAGGAAAATAGCGAGGGACGGGCGGCCCCC Direct Loss 0.975837184235461 0 0.8981024 0.41040763 prediction 0.951674368470923 Functional Loss - PDLIM2 ENSG00000120913;ENSG00000248235 CDS Human other chr8:22447179 chr8:22447179 nonsynonymous SNV 0.944 0 21 hm5C_associated_SNPs_47188 0 0 1 0 2 PDLIM2 chr8:22447109 3'AG 22447109 Downstream 71bp
chr8 22447179 22447179 1 + C A UCEC 22447179 + 22447159 22447199 41 TCAAGATGCTGCAGGAAAATCGCGAGGGACGGGCGGCCCCC TCAAGATGCTGCAGGAAAATAGCGAGGGACGGGCGGCCCCC Direct Loss 0.975837184235461 0 0.8981024 0.41040763 prediction 0.951674368470923 Functional Loss - PDLIM2 ENSG00000120913;ENSG00000248235 CDS Human other chr8:22447179 chr8:22447179 nonsynonymous SNV 0.944 0 21 hm5C_associated_SNPs_47188 0 0 1 0 2 PDLIM2 chr8:22447254 5'GT 22447254 Upstream 76bp
chr1 26607289 26607289 1 + C A PAAD 26607289 + 26607269 26607309 41 AGAGCGAGGTGACCCGAATCCTGGATGGGAAGCGCATCCAA AGAGCGAGGTGACCCGAATCATGGATGGGAAGCGCATCCAA Direct Loss 0.975825604535047 0 0.39125675 0.30153307 prediction 0.951651209070094 Functional Loss - SH3BGRL3 ENSG00000142669 CDS Human protein_coding chr1:26607289 chr1:26607289 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_47189 0 0 1 0 1 SH3BGRL3 chr1:26607256 3'AG 26607256 Downstream 34bp
chr16 56966267 56966267 1 + C G CESC 56966267 + 56966247 56966287 41 GGCTGGAGTGTGGGCCACCTCAAGGCCCACCTGAGCCGCGT GGCTGGAGTGTGGGCCACCTGAAGGCCCACCTGAGCCGCGT Direct Loss 0.975706690020904 0 0.86656773 0.82362664 prediction 0.951413380041807 Functional Loss - HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56966267 chr16:56966267 synonymous SNV . 0 21 hm5C_associated_SNPs_47195 0 0 1 0 1 HERPUD1 chr16:56966303 5'GT 56966303 Upstream 37bp
chr11 9492905 9492905 1 + C T SKCM 9492905 + 9492885 9492925 41 TCAGGGAATGACAGAGTTTCCTGGAGGAGGGATGGAGGCGC TCAGGGAATGACAGAGTTTCTTGGAGGAGGGATGGAGGCGC Direct Loss 0.975595427859115 0 0.74227977 0.89419997 prediction 0.95119085571823 Functional Loss - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9492905 chr11:9492905 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_47197 0 0 1 0 2 ZNF143 chr11:9492849 3'AG 9492849 Downstream 57bp
chr11 9492905 9492905 1 + C T SKCM 9492905 + 9492885 9492925 41 TCAGGGAATGACAGAGTTTCCTGGAGGAGGGATGGAGGCGC TCAGGGAATGACAGAGTTTCTTGGAGGAGGGATGGAGGCGC Direct Loss 0.975595427859115 0 0.74227977 0.89419997 prediction 0.95119085571823 Functional Loss - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9492905 chr11:9492905 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_47197 0 0 1 0 2 ZNF143 chr11:9492967 5'GT 9492967 Upstream 63bp
chr9 86238047 86238047 1 + C T rs116949863 86238047 + 86238027 86238067 41 GCCGGGTAGGCCGGGGCCGGCGGGGCCCGGAAGGCGACGGG GCCGGGTAGGCCGGGGCCGGTGGGGCCCGGAAGGCGACGGG Direct Loss 0.975589437123235 0 0.9036675 0.8794121 prediction 0.95117887424647 Functional Loss - IDNK ENSG00000148057 UTR5 Human protein_coding chr9:86238047 chr9:86238047 . . 0 21 hm5C_associated_SNPs_47198 0 0 0 0 2 IDNK chr9:86238119 5'GT 86238119 Upstream 73bp
chr9 86238047 86238047 1 + C T rs116949863 86238047 + 86238027 86238067 41 GCCGGGTAGGCCGGGGCCGGCGGGGCCCGGAAGGCGACGGG GCCGGGTAGGCCGGGGCCGGTGGGGCCCGGAAGGCGACGGG Direct Loss 0.975589437123235 0 0.9036675 0.8794121 prediction 0.95117887424647 Functional Loss - IDNK ENSG00000148057 UTR5 Human protein_coding chr9:86238047 chr9:86238047 . . 0 21 hm5C_associated_SNPs_47198 0 0 0 0 2 IDNK chr9:86238136 5'GT 86238136 Upstream 90bp
chr2 220100508 220100508 1 + C T UCEC 220100508 + 220100488 220100528 41 AGAAGGCAGCCCGGCGGCAACGGGAGGAACAGCAGCAGAGG AGAAGGCAGCCCGGCGGCAATGGGAGGAACAGCAGCAGAGG Direct Loss 0.975546826638443 0 0.9076017 0.9067545 prediction 0.951093653276886 Functional Loss - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220100508 chr2:220100508 nonsynonymous SNV 0.893 2 21 hm5C_associated_SNPs_47199 0 0 1 0 2 ANKZF1 chr2:220100430 3'AG 220100430 Downstream 79bp
chr2 220100508 220100508 1 + C T UCEC 220100508 + 220100488 220100528 41 AGAAGGCAGCCCGGCGGCAACGGGAGGAACAGCAGCAGAGG AGAAGGCAGCCCGGCGGCAATGGGAGGAACAGCAGCAGAGG Direct Loss 0.975546826638443 0 0.9076017 0.9067545 prediction 0.951093653276886 Functional Loss - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220100508 chr2:220100508 nonsynonymous SNV 0.893 2 21 hm5C_associated_SNPs_47199 0 0 1 0 2 ANKZF1 chr2:220100597 5'GT 220100597 Upstream 90bp
chr5 176863445 176863445 1 + C T UCEC 176863445 + 176863425 176863465 41 GGTGTCGTGGGGGCAGTGCCCGCGAGGTGAAGGAGCACCCC GGTGTCGTGGGGGCAGTGCCTGCGAGGTGAAGGAGCACCCC Direct Loss 0.975444767760867 0 0.76375663 0.39214948 prediction 0.950889535521733 Functional Loss - GRK6 ENSG00000198055 CDS Human protein_coding chr5:176863445 chr5:176863445 nonsynonymous SNV 0.349 1 21 hm5C_associated_SNPs_47204 0 0 1 0 2 GRK6 chr5:176863394 3'AG 176863394 Downstream 52bp
chr5 176863445 176863445 1 + C T UCEC 176863445 + 176863425 176863465 41 GGTGTCGTGGGGGCAGTGCCCGCGAGGTGAAGGAGCACCCC GGTGTCGTGGGGGCAGTGCCTGCGAGGTGAAGGAGCACCCC Direct Loss 0.975444767760867 0 0.76375663 0.39214948 prediction 0.950889535521733 Functional Loss - GRK6 ENSG00000198055 CDS Human protein_coding chr5:176863445 chr5:176863445 nonsynonymous SNV 0.349 1 21 hm5C_associated_SNPs_47204 0 0 1 0 2 GRK6 chr5:176863531 5'GT 176863531 Upstream 87bp
chr18 657919 657919 1 + C T PAAD 657919 + 657899 657939 41 ACCGGCACCCTGTCGGTATTCGGCATGCAGGCGCGCTACAG ACCGGCACCCTGTCGGTATTTGGCATGCAGGCGCGCTACAG Direct Loss 0.975353783908018 0 0.5150913 0.30294597 prediction 0.950707567816035 Functional Loss - TYMS;TYMSOS ENSG00000176890;ENSG00000176912 CDS Human other chr18:657919 chr18:657919 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_47209 0 0 1 0 1 TYMS;TYMSOS chr18:657947 5'GT 657947 Upstream 29bp
chr1 158325727 158325727 1 + C A LUSC 158325727 + 158325707 158325747 41 CCGTGTGGGTGATGTGGATGCGGGGTGAGCAGGAGCAGCGG CCGTGTGGGTGATGTGGATGAGGGGTGAGCAGGAGCAGCGG Direct Loss 0.975344983424681 0 0.91479135 0.78163457 prediction 0.950689966849361 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325727 chr1:158325727 synonymous SNV . 0 21 hm5C_associated_SNPs_47211 0 0 0 0 2 CD1E chr1:158325730 5'GT 158325730 Upstream 4bp
chr1 158325727 158325727 1 + C A LUSC 158325727 + 158325707 158325747 41 CCGTGTGGGTGATGTGGATGCGGGGTGAGCAGGAGCAGCGG CCGTGTGGGTGATGTGGATGAGGGGTGAGCAGGAGCAGCGG Direct Loss 0.975344983424681 0 0.91479135 0.78163457 prediction 0.950689966849361 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325727 chr1:158325727 synonymous SNV . 0 21 hm5C_associated_SNPs_47211 0 0 0 0 2 CD1E chr1:158325791 5'GT 158325791 Upstream 65bp
chr9 130868675 130868675 1 + C T BRCA 130868675 + 130868655 130868695 41 GCGGAAGACAGGCCAGTACTCAGGAATGCTGGACTGCGCCA GCGGAAGACAGGCCAGTACTTAGGAATGCTGGACTGCGCCA Direct Loss 0.975291156718893 0 0.90385044 0.84600115 prediction 0.950582313437787 Functional Loss - SLC25A25 ENSG00000148339 CDS Human protein_coding chr9:130868675 chr9:130868675 nonsynonymous SNV 0.957 0 21 hm5C_associated_SNPs_47214 0 0 1 0 1 SLC25A25 chr9:130868632 3'AG 130868632 Downstream 44bp
chr10 94452138 94452138 1 + C G LUAD 94452138 + 94452118 94452158 41 CTCGCAGGCAAACCTCTACTCTGGAGCCCCTTCTTGCAGAG CTCGCAGGCAAACCTCTACTGTGGAGCCCCTTCTTGCAGAG Direct Loss 0.975080490998085 0 0.76719326 0.38825256 prediction 0.950160981996171 Functional Loss - HHEX ENSG00000152804 CDS Human protein_coding chr10:94452138 chr10:94452138 synonymous SNV . 0 21 hm5C_associated_SNPs_47224 0 0 1 0 1 HHEX chr10:94452125 3'AG 94452125 Downstream 14bp
chr7 140389471 140389471 1 + C A STAD 140389471 + 140389451 140389491 41 GACGTGGAGGGGTTCAAAACCGAGATGGCCATGCTGGTGAC GACGTGGAGGGGTTCAAAACAGAGATGGCCATGCTGGTGAC Direct Loss 0.975072937007822 0 0.85232544 0.86796415 prediction 0.950145874015645 Functional Loss - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140389471 chr7:140389471 synonymous SNV . 0 21 hm5C_associated_SNPs_47225 0 0 1 0 2 ADCK2 chr7:140389397 3'AG 140389397 Downstream 75bp
chr7 140389471 140389471 1 + C A STAD 140389471 + 140389451 140389491 41 GACGTGGAGGGGTTCAAAACCGAGATGGCCATGCTGGTGAC GACGTGGAGGGGTTCAAAACAGAGATGGCCATGCTGGTGAC Direct Loss 0.975072937007822 0 0.85232544 0.86796415 prediction 0.950145874015645 Functional Loss - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140389471 chr7:140389471 synonymous SNV . 0 21 hm5C_associated_SNPs_47225 0 0 1 0 2 ADCK2 chr7:140389525 5'GT 140389525 Upstream 55bp
chr19 41265470 41265470 1 + C T COAD 41265470 + 41265450 41265490 41 ACCAAGAAGGCTGTGCAAGGCGGGGGAGCCACCCCCGTGGT ACCAAGAAGGCTGTGCAAGGTGGGGGAGCCACCCCCGTGGT Direct Loss 0.975005460791204 0 0.9182533 0.88719976 prediction 0.950010921582408 Functional Loss - SNRPA ENSG00000077312 CDS Human protein_coding chr19:41265470 chr19:41265470 synonymous SNV . 0 21 hm5C_associated_SNPs_47229 0 0 1 0 1 SNRPA chr19:41265515 5'GT 41265515 Upstream 46bp
chr19 30018153 30018153 1 + C T UCEC 30018153 + 30018133 30018173 41 TCCCCAAAGATGTGACAGTACGGGAGGGAGACGACATCGAA TCCCCAAAGATGTGACAGTATGGGAGGGAGACGACATCGAA Direct Loss 0.975000646969507 0 0.66268444 0.651599 prediction 0.950001293939013 Functional Loss - VSTM2B ENSG00000187135 CDS Human protein_coding chr19:30018153 chr19:30018153 nonsynonymous SNV 0.985 3 21 hm5C_associated_SNPs_47230 0 0 0 0 1 VSTM2B chr19:30018118 3'AG 30018118 Downstream 36bp
chr1 233497811 233497811 1 + C T COAD 233497811 + 233497791 233497831 41 TGTCGCAGGAGCTGCGATCCCGGGAAGAGGAGCTGACTCGG TGTCGCAGGAGCTGCGATCCTGGGAAGAGGAGCTGACTCGG Direct Loss 0.974948965613985 0 0.9050766 0.89494395 prediction 0.94989793122797 Functional Loss - MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233497811 chr1:233497811 nonsynonymous SNV 0.985 1 21 hm5C_associated_SNPs_47232 0 0 1 0 1 MAP3K21 chr1:233497799 3'AG 233497799 Downstream 13bp
chrX 26211978 26211978 1 + C T STAD 26211978 + 26211958 26211998 41 GCCATCATGCCTCGGGGTCACAAGAGTAAGCTCCGTACCTG GCCATCATGCCTCGGGGTCATAAGAGTAAGCTCCGTACCTG Direct Loss 0.974906581665197 0 0.86367214 0.8031298 prediction 0.949813163330395 Functional Loss - MAGEB6 ENSG00000176746 CDS Human protein_coding chrX:26211978 chrX:26211978 synonymous SNV . 0 21 hm5C_associated_SNPs_47235 0 0 0 0 1 MAGEB6 chrX:26211903 3'AG 26211903 Downstream 76bp
chr9 127055259 127055259 1 + C T rs534681996 127055259 + 127055239 127055279 41 GCTGGGAGGCAGCTCATTTCCGGCAGGAGGAGCAGAGCCTG GCTGGGAGGCAGCTCATTTCTGGCAGGAGGAGCAGAGCCTG Direct Loss 0.974900515107783 0 0.762229 0.38928512 prediction 0.949801030215566 Functional Loss - NEK6 ENSG00000119408 CDS Human protein_coding chr9:127055259 chr9:127055259 nonsynonymous SNV 0.006 2 21 hm5C_associated_SNPs_47236 0 0 0 0 1 NEK6 chr9:127055292 5'GT 127055292 Upstream 34bp
chr12 96350699 96350699 1 + C T COAD 96350699 + 96350679 96350719 41 GCCCGGCGGGAGCTGGACATCGGCATCTCGGCTACCTACTG GCCCGGCGGGAGCTGGACATTGGCATCTCGGCTACCTACTG Direct Loss 0.974843300048791 0 0.68952197 0.36601257 prediction 0.949686600097581 Functional Loss - AMDHD1 ENSG00000139344 CDS Human protein_coding chr12:96350699 chr12:96350699 synonymous SNV . 0 21 hm5C_associated_SNPs_47237 0 0 1 0 1 AMDHD1 chr12:96350740 5'GT 96350740 Upstream 42bp
chr19 41743883 41743883 1 + C T BRCA 41743883 + 41743863 41743903 41 CGATGGGATGGGCATCCAGGCGGGAGAACCAGACCCCCCAG CGATGGGATGGGCATCCAGGTGGGAGAACCAGACCCCCCAG Direct Loss 0.974837554923686 0 0.91474104 0.8019979 prediction 0.949675109847371 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41743883 chr19:41743883 nonsynonymous SNV 0.009 0 21 hm5C_associated_SNPs_47239 0 0 0 0 1 AXL chr19:41743849 3'AG 41743849 Downstream 35bp
chr2 68385189 68385189 1 + C T GBM 68385189 + 68385169 68385209 41 CTGTCCGCAGCAGGAGAGGGCGGGGATGCGGGCCGCATGGA CTGTCCGCAGCAGGAGAGGGTGGGGATGCGGGCCGCATGGA Direct Loss 0.974835429843852 0 0.9127034 0.8710667 prediction 0.949670859687703 Functional Loss - PNO1 ENSG00000115946;ENSG00000273398 CDS Human protein_coding chr2:68385189 chr2:68385189 synonymous SNV . 0 21 hm5C_associated_SNPs_47240 0 0 1 0 1 PNO1 chr2:68385273 5'GT 68385273 Upstream 85bp
chr3 139063000 139063000 1 + C G CESC 139063000 + 139062980 139063020 41 CAACCGCTACCTTGCTCTTTCGAGATGGGGCTGCCACGCCG CAACCGCTACCTTGCTCTTTGGAGATGGGGCTGCCACGCCG Direct Loss 0.974729744703731 0 0.95111316 0.9293251 prediction 0.949459489407461 Functional Loss - MRPS22 ENSG00000175110 CDS Human protein_coding chr3:139063000 chr3:139063000 nonsynonymous SNV 0.005 0 21 hm5C_associated_SNPs_47246 0 0 1 0 1 MRPS22 chr3:139063040 5'GT 139063040 Upstream 41bp
chr19 8550545 8550545 1 + C T UCEC 8550545 + 8550525 8550565 41 GGTCCTGGCATTGACCGCCTCGGGGGTGCCGGCATGGAGCG GGTCCTGGCATTGACCGCCTTGGGGGTGCCGGCATGGAGCG Direct Loss 0.974692939598518 0 0.9320346 0.7841723 prediction 0.949385879197036 Functional Loss - HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8550545 chr19:8550545 synonymous SNV . 0 21 hm5C_associated_SNPs_47248 0 0 1 0 1 HNRNPM chr19:8550487 3'AG 8550487 Downstream 59bp
chr2 239010690 239010690 1 + C A rs34878344 239010690 + 239010670 239010710 41 ACTCGGCCACGCTAGAGACCCGGGAGGGAGCCCGGCCGCTG ACTCGGCCACGCTAGAGACCAGGGAGGGAGCCCGGCCGCTG Direct Loss 0.974679202568514 0 0.9418125 0.9340296 prediction 0.949358405137028 Functional Loss - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239010690 chr2:239010690 synonymous SNV . 0 21 hm5C_associated_SNPs_47249 0 0 0 0 1 ESPNL chr2:239010772 5'GT 239010772 Upstream 83bp
chr1 235597533 235597533 1 + C T UCEC 235597533 + 235597513 235597553 41 TTCCAGGTGCTGCGGTGTGTCGCGGGGTGCCCAGGCCTGGA TTCCAGGTGCTGCGGTGTGTTGCGGGGTGCCCAGGCCTGGA Direct Loss 0.974678476999388 0 0.91008073 0.7085371 prediction 0.949356953998776 Functional Loss - TBCE ENSG00000116957 CDS Human protein_coding chr1:235597533 chr1:235597533 synonymous SNV . 0 21 hm5C_associated_SNPs_47250 0 0 1 0 2 TBCE chr1:235597519 3'AG 235597519 Downstream 15bp
chr1 235597533 235597533 1 + C T UCEC 235597533 + 235597513 235597553 41 TTCCAGGTGCTGCGGTGTGTCGCGGGGTGCCCAGGCCTGGA TTCCAGGTGCTGCGGTGTGTTGCGGGGTGCCCAGGCCTGGA Direct Loss 0.974678476999388 0 0.91008073 0.7085371 prediction 0.949356953998776 Functional Loss - TBCE ENSG00000116957 CDS Human protein_coding chr1:235597533 chr1:235597533 synonymous SNV . 0 21 hm5C_associated_SNPs_47250 0 0 1 0 2 TBCE chr1:235597595 5'GT 235597595 Upstream 63bp
chr1 154296202 154296202 1 + C T STAD 154296202 + 154296182 154296222 41 TTATCCATGGGTGCCAACTGCGGGATTCCACTCAACCCTGC TTATCCATGGGTGCCAACTGTGGGATTCCACTCAACCCTGC Direct Loss 0.974672466811784 0 0.91197467 0.8781197 prediction 0.949344933623568 Functional Loss - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154296202 chr1:154296202 synonymous SNV . 0 21 hm5C_associated_SNPs_47251 0 0 1 0 1 AQP10 chr1:154296282 5'GT 154296282 Upstream 81bp
chr11 62382160 62382160 1 + C T UCEC 62382160 + 62382140 62382180 41 GCTTGGAGGGGTCATTGATGCGGGAGGAGAGACCCAGGGCT GCTTGGAGGGGTCATTGATGTGGGAGGAGAGACCCAGGGCT Direct Loss 0.974592955320085 0 0.93269813 0.9142872 prediction 0.949185910640171 Functional Loss - ROM1 ENSG00000149489 CDS Human protein_coding chr11:62382160 chr11:62382160 nonsynonymous SNV 0.976 0 21 hm5C_associated_SNPs_47255 0 0 0 0 1 ROM1 chr11:62382093 3'AG 62382093 Downstream 68bp
chr11 45949777 45949777 1 + C T STAD 45949777 + 45949757 45949797 41 CCACAGACTATGCCCGCTGGCGGGAGGCTCAGGCCCCGTAC CCACAGACTATGCCCGCTGGTGGGAGGCTCAGGCCCCGTAC Direct Loss 0.974562652938415 0 0.9422135 0.91594017 prediction 0.94912530587683 Functional Loss - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45949777 chr11:45949777 nonsynonymous SNV 0.951 4 21 hm5C_associated_SNPs_47256 0 0 1 0 1 LARGE2 chr11:45949728 3'AG 45949728 Downstream 50bp
chr6 137243952 137243952 1 + C T COAD 137243952 + 137243932 137243972 41 GCTCAAGAACGGCGCGCCCTCGCCAGGGGTGCTGGCGGCGG GCTCAAGAACGGCGCGCCCTTGCCAGGGGTGCTGGCGGCGG Direct Loss 0.974556742163109 0 0.61605376 0.21114084 prediction 0.949113484326218 Functional Loss - SLC35D3 ENSG00000182747 CDS Human protein_coding chr6:137243952 chr6:137243952 nonsynonymous SNV 0.977 3 21 hm5C_associated_SNPs_47257 0 0 0 0 1 SLC35D3 chr6:137244005 5'GT 137244005 Upstream 54bp
chrX 102632525 102632525 1 + C T SKCM 102632525 + 102632505 102632545 41 GCCACCAGCCTGCAGGAAATCGACGGGGACAGGCTCGCCGA GCCACCAGCCTGCAGGAAATTGACGGGGACAGGCTCGCCGA Direct Loss 0.974555216832713 0 0.8654676 0.381416 prediction 0.949110433665427 Functional Loss - BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632525 chrX:102632525 stopgain 0.927 1 21 hm5C_associated_SNPs_47258 0 0 1 0 1 BEX3 chrX:102632438 3'AG 102632438 Downstream 88bp
chr9 91150599 91150599 1 + C A LUAD 91150599 + 91150579 91150619 41 AGGAGATGCTGGACTTCATGCGCGAGCTGCATGGCGCCTGG AGGAGATGCTGGACTTCATGAGCGAGCTGCATGGCGCCTGG Direct Loss 0.974473973222179 0 0.7781161 0.82604945 prediction 0.948947946444357 Functional Loss - NXNL2 ENSG00000130045 CDS Human protein_coding chr9:91150599 chr9:91150599 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_47264 0 0 0 0 1 NXNL2 chr9:91150651 5'GT 91150651 Upstream 53bp
chr18 22006711 22006711 1 + C T rs369080399 22006711 + 22006691 22006731 41 CGGCGGCTGCAGGGCAGGTCCAGGGGCCACATGGCTGAGGG CGGCGGCTGCAGGGCAGGTCTAGGGGCCACATGGCTGAGGG Direct Loss 0.974452626649645 0 0.901204 0.8727727 prediction 0.94890525329929 Functional Loss - IMPACT ENSG00000154059 UTR5 Human protein_coding chr18:22006711 chr18:22006711 . . 0 21 hm5C_associated_SNPs_47267 0 0 1 0 1 IMPACT chr18:22006756 5'GT 22006756 Upstream 46bp
chr13 111371617 111371617 1 + C T UCEC 111371617 + 111371597 111371637 41 AGTGCTACGAGCGCTTCAGTCGCGAGACAGACGGGGCGCAG AGTGCTACGAGCGCTTCAGTTGCGAGACAGACGGGGCGCAG Direct Loss 0.974329734788571 0 0.86141366 0.48015922 prediction 0.948659469577142 Functional Loss - ING1 ENSG00000153487 CDS Human protein_coding chr13:111371617 chr13:111371617 nonsynonymous SNV 0.022 4 21 hm5C_associated_SNPs_47271 0 0 1 0 1 ING1 chr13:111371576 3'AG 111371576 Downstream 42bp
chr19 17873655 17873655 1 + C T UCEC 17873655 + 17873635 17873675 41 AGGAGCTGGCGGACTTCATCCGGGAGAGGTGAGGTCCCCAA AGGAGCTGGCGGACTTCATCTGGGAGAGGTGAGGTCCCCAA Direct Loss 0.974319891454648 0 0.9373492 0.93338263 prediction 0.948639782909295 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17873655 chr19:17873655 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_47274 0 0 1 0 2 FCHO1 chr19:17873571 3'AG 17873571 Downstream 85bp
chr19 17873655 17873655 1 + C T UCEC 17873655 + 17873635 17873675 41 AGGAGCTGGCGGACTTCATCCGGGAGAGGTGAGGTCCCCAA AGGAGCTGGCGGACTTCATCTGGGAGAGGTGAGGTCCCCAA Direct Loss 0.974319891454648 0 0.9373492 0.93338263 prediction 0.948639782909295 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17873655 chr19:17873655 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_47274 0 0 1 0 2 FCHO1 chr19:17873662 5'GT 17873662 Upstream 8bp
chr1 158151354 158151354 1 + C T HNSC 158151354 + 158151334 158151374 41 GGGGAGCTGCAGACGCACAGCTGGAGCAACGACTCGGACAC GGGGAGCTGCAGACGCACAGTTGGAGCAACGACTCGGACAC Direct Loss 0.974310149163669 0 0.37745094 0.3605051 prediction 0.948620298327339 Functional Loss - CD1D ENSG00000158473 CDS Human protein_coding chr1:158151354 chr1:158151354 synonymous SNV . 0 21 hm5C_associated_SNPs_47275 0 0 0 0 1 CD1D chr1:158151280 3'AG 158151280 Downstream 75bp
chr2 7023639 7023639 1 + C T COAD 7023639 + 7023619 7023659 41 TGAGCAATGGAAGCCTGATCCGGGAGAGGTGGTTCCAGAAT TGAGCAATGGAAGCCTGATCTGGGAGAGGTGGTTCCAGAAT Direct Loss 0.974301412645742 0 0.91621846 0.882805 prediction 0.948602825291484 Functional Loss - RSAD2 ENSG00000134321 CDS Human protein_coding chr2:7023639 chr2:7023639 nonsynonymous SNV 0.985 2 21 hm5C_associated_SNPs_47276 0 0 0 0 1 RSAD2 chr2:7023663 5'GT 7023663 Upstream 25bp
chr20 30672339 30672339 1 + C T COAD 30672339 + 30672319 30672359 41 GCTGGGCAGTTTGGGGAAGTCTGGATGGGTAAGGACCCAGG GCTGGGCAGTTTGGGGAAGTTTGGATGGGTAAGGACCCAGG Direct Loss 0.974210083285874 0 0.8894346 0.8781637 prediction 0.948420166571748 Functional Loss - HCK ENSG00000101336 CDS Human protein_coding chr20:30672339 chr20:30672339 synonymous SNV . 0 21 hm5C_associated_SNPs_47283 0 0 0 0 1 HCK chr20:30672346 5'GT 30672346 Upstream 8bp
chr17 61907223 61907223 1 + C T LUSC 61907223 + 61907203 61907243 41 GCCATCTAGTTCGCCTATTGCGGGAGGAGCTACAGCTGCTG GCCATCTAGTTCGCCTATTGTGGGAGGAGCTACAGCTGCTG Direct Loss 0.974172512499803 0 0.92593396 0.898916 prediction 0.948345024999605 Functional Loss - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61907223 chr17:61907223 nonsynonymous SNV 0.996 3 21 hm5C_associated_SNPs_47284 0 0 1 0 2 PSMC5 chr17:61907212 3'AG 61907212 Downstream 12bp
chr17 61907223 61907223 1 + C T LUSC 61907223 + 61907203 61907243 41 GCCATCTAGTTCGCCTATTGCGGGAGGAGCTACAGCTGCTG GCCATCTAGTTCGCCTATTGTGGGAGGAGCTACAGCTGCTG Direct Loss 0.974172512499803 0 0.92593396 0.898916 prediction 0.948345024999605 Functional Loss - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61907223 chr17:61907223 nonsynonymous SNV 0.996 3 21 hm5C_associated_SNPs_47284 0 0 1 0 2 PSMC5 chr17:61907309 5'GT 61907309 Upstream 87bp
chr7 142962141 142962141 1 + C A CESC 142962141 + 142962121 142962161 41 ACTTGGAGCATCCAGAGATGCTGGAGAAAGCGTCCCGGGAG ACTTGGAGCATCCAGAGATGATGGAGAAAGCGTCCCGGGAG Direct Loss 0.974165811422641 0 0.8282771 0.80688965 prediction 0.948331622845281 Functional Loss - GSTK1 ENSG00000197448 CDS Human protein_coding chr7:142962141 chr7:142962141 nonsynonymous SNV 0.962 3 21 hm5C_associated_SNPs_47285 0 0 1 0 1 GSTK1 chr7:142962085 3'AG 142962085 Downstream 57bp
chr14 105865714 105865714 1 + C T CESC 105865714 + 105865694 105865734 41 TGTCCCCCCGGGGGAAGAAGCTGGAGTCGCACCTCTCCCAA TGTCCCCCCGGGGGAAGAAGTTGGAGTCGCACCTCTCCCAA Direct Loss 0.974089918900938 0 0.9321873 0.9191331 prediction 0.948179837801875 Functional Loss - TEX22 ENSG00000226174 CDS Human protein_coding chr14:105865714 chr14:105865714 synonymous SNV . 0 21 hm5C_associated_SNPs_47289 0 0 0 0 1 TEX22 chr14:105865639 3'AG 105865639 Downstream 76bp
chr17 29036762 29036762 1 + C A rs577422641 29036762 + 29036742 29036782 41 GCTCCGGGAGATGTGCCGGGCGGGGGGCCCGGGTTCGCCGA GCTCCGGGAGATGTGCCGGGAGGGGGGCCCGGGTTCGCCGA Direct Loss 0.974059147096645 0 0.9272777 0.9199307 prediction 0.94811829419329 Functional Loss - SUZ12P1 ENSG00000264538 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:29036762 chr17:29036762 . . 0 21 hm5C_associated_SNPs_47291 0 0 0 0 1 SUZ12P1 chr17:29036829 5'GT 29036829 Upstream 68bp
chr17 6927479 6927479 1 + C T STAD 6927479 + 6927459 6927499 41 TCTGCCCGGGGGTCCCGAAGCGAGAGGCTTCGCCCCTCTAT TCTGCCCGGGGGTCCCGAAGTGAGAGGCTTCGCCCCTCTAT Direct Loss 0.974002035392102 0 0.95813954 0.94650126 prediction 0.948004070784203 Functional Loss - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6927479 chr17:6927479 nonsynonymous SNV 0.975 1 21 hm5C_associated_SNPs_47294 0 0 0 0 1 BCL6B chr17:6927402 3'AG 6927402 Downstream 78bp
chr7 142562446 142562446 1 + C T PRAD 142562446 + 142562426 142562466 41 GGCAAGTGGATGGTAGCTGTCGGGGGCTGCCGCTGCCAGCC GGCAAGTGGATGGTAGCTGTTGGGGGCTGCCGCTGCCAGCC Direct Loss 0.97400118569389 0 0.97486657 0.95472646 prediction 0.94800237138778 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142562446 chr7:142562446 synonymous SNV . 0 21 hm5C_associated_SNPs_47295 0 0 0 0 1 EPHB6 chr7:142562504 5'GT 142562504 Upstream 59bp
chr19 38755600 38755600 1 + C G CESC 38755600 + 38755580 38755620 41 GCTGGGATCGCTGCTCCTCTCTGGGGTCCTGGCGGCCGACC GCTGGGATCGCTGCTCCTCTGTGGGGTCCTGGCGGCCGACC Direct Loss 0.973979440832467 0 0.9000498 0.5727608 prediction 0.947958881664933 Functional Loss - SPINT2 ENSG00000167642 CDS Human protein_coding chr19:38755600 chr19:38755600 nonsynonymous SNV 0.384 0 21 hm5C_associated_SNPs_47296 0 0 1 0 1 SPINT2 chr19:38755638 5'GT 38755638 Upstream 39bp
chr4 17608478 17608478 1 + C T CESC 17608478 + 17608458 17608498 41 ATTGAAACAGGGGACCGTGTCTGGAGGATGCCTCTCTTCGA ATTGAAACAGGGGACCGTGTTTGGAGGATGCCTCTCTTCGA Direct Loss 0.973916756834835 0 0.8468182 0.5204057 prediction 0.947833513669669 Functional Loss - LAP3 ENSG00000002549 CDS Human protein_coding chr4:17608478 chr4:17608478 synonymous SNV . 0 21 hm5C_associated_SNPs_47300 0 0 1 0 2 LAP3 chr4:17608452 3'AG 17608452 Downstream 27bp
chr4 17608478 17608478 1 + C T CESC 17608478 + 17608458 17608498 41 ATTGAAACAGGGGACCGTGTCTGGAGGATGCCTCTCTTCGA ATTGAAACAGGGGACCGTGTTTGGAGGATGCCTCTCTTCGA Direct Loss 0.973916756834835 0 0.8468182 0.5204057 prediction 0.947833513669669 Functional Loss - LAP3 ENSG00000002549 CDS Human protein_coding chr4:17608478 chr4:17608478 synonymous SNV . 0 21 hm5C_associated_SNPs_47300 0 0 1 0 2 LAP3 chr4:17608561 5'GT 17608561 Upstream 84bp
chr19 15164633 15164633 1 + C A KIRC 15164633 + 15164613 15164653 41 TTCGTGGTACTCATGGCTCACGGGAGGGAAGGCTTCCTCAA TTCGTGGTACTCATGGCTCAAGGGAGGGAAGGCTTCCTCAA Direct Loss 0.973891825139544 0 0.90381515 0.8927006 prediction 0.947783650279087 Functional Loss - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15164633 chr19:15164633 nonsynonymous SNV 0.573 4 21 hm5C_associated_SNPs_47302 0 0 0 0 1 CASP14 chr19:15164544 3'AG 15164544 Downstream 90bp
chr1 110996681 110996681 1 + C T COAD 110996681 + 110996661 110996701 41 ACCCCGCTGGGGCGGGAAGGCGAGGAGTGCCACCCCGGCAG ACCCCGCTGGGGCGGGAAGGTGAGGAGTGCCACCCCGGCAG Direct Loss 0.973854347813544 0 0.93184114 0.9269799 prediction 0.947708695627089 Functional Loss - PROK1 ENSG00000143125 CDS Human protein_coding chr1:110996681 chr1:110996681 synonymous SNV . 0 21 hm5C_associated_SNPs_47304 0 0 0 0 2 PROK1 chr1:110996583 3'AG 110996583 Downstream 99bp
chr1 110996681 110996681 1 + C T COAD 110996681 + 110996661 110996701 41 ACCCCGCTGGGGCGGGAAGGCGAGGAGTGCCACCCCGGCAG ACCCCGCTGGGGCGGGAAGGTGAGGAGTGCCACCCCGGCAG Direct Loss 0.973854347813544 0 0.93184114 0.9269799 prediction 0.947708695627089 Functional Loss - PROK1 ENSG00000143125 CDS Human protein_coding chr1:110996681 chr1:110996681 synonymous SNV . 0 21 hm5C_associated_SNPs_47304 0 0 0 0 2 PROK1 chr1:110996708 5'GT 110996708 Upstream 28bp
chr16 842518 842518 1 + C T rs35387463 842518 + 842498 842538 41 ACAGGGCCCGGCTGTGCCTTCGGGAGGCGGCCGACGGCGCC ACAGGGCCCGGCTGTGCCTTTGGGAGGCGGCCGACGGCGCC Direct Loss 0.973840611474947 0 0.9126345 0.89000165 prediction 0.947681222949894 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842518 chr16:842518 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47305 0 0 1 0 2 CHTF18 chr16:842439 3'AG 842439 Downstream 80bp
chr16 842518 842518 1 + C T rs35387463 842518 + 842498 842538 41 ACAGGGCCCGGCTGTGCCTTCGGGAGGCGGCCGACGGCGCC ACAGGGCCCGGCTGTGCCTTTGGGAGGCGGCCGACGGCGCC Direct Loss 0.973840611474947 0 0.9126345 0.89000165 prediction 0.947681222949894 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842518 chr16:842518 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47305 0 0 1 0 2 CHTF18 chr16:842590 5'GT 842590 Upstream 73bp
chr15 40675518 40675518 1 + C T LUAD 40675518 + 40675498 40675538 41 TGCGCTGAGCGGCGGCCAGCCGGCAGGTGAGGGTCCAAGCC TGCGCTGAGCGGCGGCCAGCTGGCAGGTGAGGGTCCAAGCC Direct Loss 0.973840439697852 0 0.91110885 0.7598267 prediction 0.947680879395704 Functional Loss - KNSTRN ENSG00000128944 CDS Human protein_coding chr15:40675518 chr15:40675518 nonsynonymous SNV 0.641 1 21 hm5C_associated_SNPs_47306 0 0 1 0 1 KNSTRN chr15:40675523 5'GT 40675523 Upstream 6bp
chr14 31091558 31091558 1 + C T KIRP 31091558 + 31091538 31091578 41 AGCCAAGATGGCGGCGGCGGCGGCAGCGACAGCAGCAGCAG AGCCAAGATGGCGGCGGCGGTGGCAGCGACAGCAGCAGCAG Direct Loss 0.973614439922611 0 0.8906857 0.8125291 prediction 0.947228879845222 Functional Loss - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31091558 chr14:31091558 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_47315 0 0 1 0 1 SCFD1 chr14:31091605 5'GT 31091605 Upstream 48bp
chrX 3002622 3002622 1 + C T UCEC 3002622 + 3002602 3002642 41 ACTGGGACTGCCTCCTCATGCGGGGGCACGAGATCACGGAG ACTGGGACTGCCTCCTCATGTGGGGGCACGAGATCACGGAG Direct Loss 0.973496546133029 0 0.9493048 0.7988223 prediction 0.946993092266057 Functional Loss - ARSF ENSG00000062096 CDS Human protein_coding chrX:3002622 chrX:3002622 nonsynonymous SNV 0.238 4 21 hm5C_associated_SNPs_47323 0 0 0 0 1 ARSF chrX:3002707 5'GT 3002707 Upstream 86bp
chr2 113763586 113763586 1 + C A BLCA 113763586 + 113763566 113763606 41 CACCTCAGCAGGGGAGCATTCAGGATATCAATCATCGGGTG CACCTCAGCAGGGGAGCATTAAGGATATCAATCATCGGGTG Direct Loss 0.973464330926358 0 0.917101 0.52122116 prediction 0.946928661852716 Functional Loss - IL36A ENSG00000136694 CDS Human protein_coding chr2:113763586 chr2:113763586 nonsynonymous SNV 0.008 0 21 hm5C_associated_SNPs_47327 0 0 0 0 2 IL36A chr2:113763551 3'AG 113763551 Downstream 36bp
chr2 113763586 113763586 1 + C A BLCA 113763586 + 113763566 113763606 41 CACCTCAGCAGGGGAGCATTCAGGATATCAATCATCGGGTG CACCTCAGCAGGGGAGCATTAAGGATATCAATCATCGGGTG Direct Loss 0.973464330926358 0 0.917101 0.52122116 prediction 0.946928661852716 Functional Loss - IL36A ENSG00000136694 CDS Human protein_coding chr2:113763586 chr2:113763586 nonsynonymous SNV 0.008 0 21 hm5C_associated_SNPs_47327 0 0 0 0 2 IL36A chr2:113763664 5'GT 113763664 Upstream 79bp
chr8 117950739 117950739 1 + C A rs369425409 117950739 + 117950719 117950759 41 GCAGGAGGCGGCGGCGGCGGCGGCGGCGCGGGAGGAGCAGA GCAGGAGGCGGCGGCGGCGGAGGCGGCGCGGGAGGAGCAGA Direct Loss 0.973433464782719 0 0.93811333 0.9349629 prediction 0.946866929565438 Functional Loss - AARD ENSG00000205002 CDS Human protein_coding chr8:117950739 chr8:117950739 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_47329 0 0 0 0 1 AARD chr8:117950806 5'GT 117950806 Upstream 68bp
chr3 4345184 4345184 1 + C T rs60314351 4345184 + 4345164 4345204 41 TGCCGGTGGGCGCGTGGCCCCCGGGGGCCGCGCCGGCGCCC TGCCGGTGGGCGCGTGGCCCTCGGGGGCCGCGCCGGCGCCC Direct Loss 0.973426654094664 0 0.9031975 0.9206637 prediction 0.946853308189328 Functional Loss - SETMAR ENSG00000170364 CDS Human protein_coding chr3:4345184 chr3:4345184 nonsynonymous SNV 0.028 0 21 hm5C_associated_SNPs_47330 0 0 1 0 1 SETMAR chr3:4345210 5'GT 4345210 Upstream 27bp
chr16 3707055 3707055 1 + C T STAD 3707055 + 3707035 3707075 41 GCCCCGGGGGACGCAGTAGCCGAGATCGACGCTCTCTATGA GCCCCGGGGGACGCAGTAGCTGAGATCGACGCTCTCTATGA Direct Loss 0.973355789794742 0 0.74687356 0.3951158 prediction 0.946711579589485 Functional Loss - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707055 chr16:3707055 synonymous SNV . 0 21 hm5C_associated_SNPs_47337 0 0 0 0 2 DNASE1 chr16:3707000 3'AG 3707000 Downstream 56bp
chr16 3707055 3707055 1 + C T STAD 3707055 + 3707035 3707075 41 GCCCCGGGGGACGCAGTAGCCGAGATCGACGCTCTCTATGA GCCCCGGGGGACGCAGTAGCTGAGATCGACGCTCTCTATGA Direct Loss 0.973355789794742 0 0.74687356 0.3951158 prediction 0.946711579589485 Functional Loss - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707055 chr16:3707055 synonymous SNV . 0 21 hm5C_associated_SNPs_47337 0 0 0 0 2 DNASE1 chr16:3707112 5'GT 3707112 Upstream 58bp
chr20 39978986 39978986 1 + C G BLCA 39978986 + 39978966 39979006 41 AGTCATGGAGCTGGGCCACTCTGGAGGTTCCAGTTCCCACC AGTCATGGAGCTGGGCCACTGTGGAGGTTCCAGTTCCCACC Direct Loss 0.973340537639205 0 0.80138016 0.4437911 prediction 0.94668107527841 Functional Loss - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39978986 chr20:39978986 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_47338 0 0 0 0 1 LPIN3 chr20:39979037 5'GT 39979037 Upstream 52bp
chr10 73115851 73115851 1 + C T CESC 73115851 + 73115831 73115871 41 TCTGCAGGAGGAGCCATGGGCGGGACGGTCAGCGCCGTGGC TCTGCAGGAGGAGCCATGGGTGGGACGGTCAGCGCCGTGGC Direct Loss 0.973339163092229 0 0.8938432 0.8321515 prediction 0.946678326184458 Functional Loss - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73115851 chr10:73115851 synonymous SNV . 0 21 hm5C_associated_SNPs_47339 0 0 0 0 1 SLC29A3 chr10:73115838 3'AG 73115838 Downstream 14bp
chrX 30236764 30236764 1 + C T OV 30236764 + 30236744 30236784 41 GCAAGGCCCGAGATGAGACCCGGGGTCTCAATGTTCCTCAG GCAAGGCCCGAGATGAGACCTGGGGTCTCAATGTTCCTCAG Direct Loss 0.973263593746409 0 0.89051163 0.49993667 prediction 0.946527187492819 Functional Loss - MAGEB2 ENSG00000099399 CDS Human protein_coding chrX:30236764 chrX:30236764 nonsynonymous SNV 0.005 1 21 hm5C_associated_SNPs_47347 0 0 0 0 1 MAGEB2 chrX:30236693 3'AG 30236693 Downstream 72bp
chr19 1440079 1440079 1 + C T UCEC 1440079 + 1440059 1440099 41 GGCTGAACCGGGGCCTGCGGCGGAAGCAGCACTCCCTGCTG GGCTGAACCGGGGCCTGCGGTGGAAGCAGCACTCCCTGCTG Direct Loss 0.973212564780408 0 0.9181402 0.89050716 prediction 0.946425129560817 Functional Loss - RPS15 ENSG00000115268 CDS Human protein_coding chr19:1440079 chr19:1440079 nonsynonymous SNV 0.968 0 21 hm5C_associated_SNPs_47351 0 0 1 0 1 RPS15 chr19:1440018 3'AG 1440018 Downstream 62bp
chr7 155090019 155090019 1 + C T BLCA 155090019 + 155089999 155090039 41 CCCAGATTGCACGACCACTTCTGGAGCTGCTCCTGTGCGCA CCCAGATTGCACGACCACTTTTGGAGCTGCTCCTGTGCGCA Direct Loss 0.973199543669681 0 0.59157985 0.8093127 prediction 0.946399087339362 Functional Loss - INSIG1 ENSG00000186480 CDS Human protein_coding chr7:155090019 chr7:155090019 synonymous SNV . 0 21 hm5C_associated_SNPs_47352 0 0 1 0 1 INSIG1 chr7:155089969 3'AG 155089969 Downstream 51bp
chr15 91500425 91500425 1 + C T CESC 91500425 + 91500405 91500445 41 TGGGCCTCGGAGGGGCTCCTCGCGGTGCTGCGCGCCGGGCC TGGGCCTCGGAGGGGCTCCTTGCGGTGCTGCGCGCCGGGCC Direct Loss 0.973196086294514 0 0.8895544 0.86396825 prediction 0.946392172589028 Functional Loss - RCCD1 ENSG00000166965 CDS Human protein_coding chr15:91500425 chr15:91500425 synonymous SNV . 0 21 hm5C_associated_SNPs_47353 0 0 1 0 1 RCCD1 chr15:91500343 3'AG 91500343 Downstream 83bp
chr3 100148673 100148673 1 + C T SKCM 100148673 + 100148653 100148693 41 AGGAGGATCAGAGAGGACTCCGGGAACGCCACCGACTGCAA AGGAGGATCAGAGAGGACTCTGGGAACGCCACCGACTGCAA Direct Loss 0.973156913720589 0 0.90628135 0.8338393 prediction 0.946313827441179 Functional Loss - LNP1 ENSG00000206535 CDS Human protein_coding chr3:100148673 chr3:100148673 nonsynonymous SNV 0.738 3 21 hm5C_associated_SNPs_47357 0 0 0 1 1 LNP1 chr3:100148729 5'GT 100148729 Upstream 57bp
chrX 13588040 13588040 1 + C T SKCM 13588040 + 13588020 13588060 41 TCCTGGGTGGCAGGTGGTTTCGGGAACGCGGCCAGGTGAGT TCCTGGGTGGCAGGTGGTTTTGGGAACGCGGCCAGGTGAGT Direct Loss 0.973134268368691 0 0.9186139 0.8722744 prediction 0.946268536737382 Functional Loss - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13588040 chrX:13588040 synonymous SNV . 0 21 hm5C_associated_SNPs_47359 0 0 0 0 1 EGFL6 chrX:13588054 5'GT 13588054 Upstream 15bp
chr3 112064109 112064109 1 + C T BLCA 112064109 + 112064089 112064129 41 CTTTGGTTTTGGGAAGATCTCAGGAACGGCCTGCCTCACCG CTTTGGTTTTGGGAAGATCTTAGGAACGGCCTGCCTCACCG Direct Loss 0.973128604170581 0 0.9077031 0.87235177 prediction 0.946257208341162 Functional Loss - CD200 ENSG00000091972 CDS Human protein_coding chr3:112064109 chr3:112064109 nonsynonymous SNV 0.964 4 21 hm5C_associated_SNPs_47360 0 0 0 0 1 CD200 chr3:112064135 5'GT 112064135 Upstream 27bp
chr8 146278000 146278000 1 + C T rs139779460 146278000 + 146277980 146278020 41 ACATCTTGCTGGGGAGGCAGCGGCGGCCCCAGGCCCGGGTA ACATCTTGCTGGGGAGGCAGTGGCGGCCCCAGGCCCGGGTA Direct Loss 0.973105147019839 0 0.93848634 0.90595436 prediction 0.946210294039679 Functional Loss - C8orf33 ENSG00000182307 CDS Human protein_coding chr8:146278000 chr8:146278000 nonsynonymous SNV 0.006 0 21 hm5C_associated_SNPs_47362 0 0 1 0 1 C8orf33 chr8:146277972 3'AG 146277972 Downstream 29bp
chr3 50614558 50614558 1 + C G CESC 50614558 + 50614538 50614578 41 CCCCAGGCAGCCCCCTCATTCTGGAGGTGGGCTGCGGATCA CCCCAGGCAGCCCCCTCATTGTGGAGGTGGGCTGCGGATCA Direct Loss 0.973104239171425 0 0.88173425 0.70804846 prediction 0.94620847834285 Functional Loss - HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614558 chr3:50614558 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_47363 0 0 0 0 2 HEMK1 chr3:50614483 3'AG 50614483 Downstream 76bp
chr3 50614558 50614558 1 + C G CESC 50614558 + 50614538 50614578 41 CCCCAGGCAGCCCCCTCATTCTGGAGGTGGGCTGCGGATCA CCCCAGGCAGCCCCCTCATTGTGGAGGTGGGCTGCGGATCA Direct Loss 0.973104239171425 0 0.88173425 0.70804846 prediction 0.94620847834285 Functional Loss - HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614558 chr3:50614558 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_47363 0 0 0 0 2 HEMK1 chr3:50614617 5'GT 50614617 Upstream 60bp
chr1 11808642 11808642 1 + C T COAD 11808642 + 11808622 11808662 41 TACCACATGTACCGGGAGCGCGGGGGTGAGCTCCTGGTCCA TACCACATGTACCGGGAGCGTGGGGGTGAGCTCCTGGTCCA Direct Loss 0.973082691188369 0 0.94610596 0.92624635 prediction 0.946165382376737 Functional Loss - AGTRAP ENSG00000177674 CDS Human protein_coding chr1:11808642 chr1:11808642 nonsynonymous SNV 0.878 1 21 hm5C_associated_SNPs_47365 0 0 1 0 2 AGTRAP chr1:11808646 5'GT 11808646 Upstream 5bp
chr1 11808642 11808642 1 + C T COAD 11808642 + 11808622 11808662 41 TACCACATGTACCGGGAGCGCGGGGGTGAGCTCCTGGTCCA TACCACATGTACCGGGAGCGTGGGGGTGAGCTCCTGGTCCA Direct Loss 0.973082691188369 0 0.94610596 0.92624635 prediction 0.946165382376737 Functional Loss - AGTRAP ENSG00000177674 CDS Human protein_coding chr1:11808642 chr1:11808642 nonsynonymous SNV 0.878 1 21 hm5C_associated_SNPs_47365 0 0 1 0 2 AGTRAP chr1:11808667 5'GT 11808667 Upstream 26bp
chr1 7845005 7845005 1 + C T UCEC 7845005 + 7844985 7845025 41 CGAGGCCCTGGGCGAAGAATCGGGGGAGCGGTGGAGCCCCG CGAGGCCCTGGGCGAAGAATTGGGGGAGCGGTGGAGCCCCG Direct Loss 0.973063160529104 0 0.9434857 0.9098515 prediction 0.946126321058209 Functional Loss - PER3 ENSG00000049246 CDS Human protein_coding chr1:7845005 chr1:7845005 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47366 0 0 0 0 1 PER3 chr1:7845065 5'GT 7845065 Upstream 61bp
chr19 41949983 41949983 1 + C T rs111840261 41949983 + 41949963 41950003 41 GGCTGGAGATGGGGGCGCTGCGGGAGGAACTGGTCACCATA GGCTGGAGATGGGGGCGCTGTGGGAGGAACTGGTCACCATA Direct Loss 0.973061117140514 0 0.90869874 0.9091091 prediction 0.946122234281029 Functional Loss - ERICH4 ENSG00000204978 CDS Human protein_coding chr19:41949983 chr19:41949983 nonsynonymous SNV 0.034 2 21 hm5C_associated_SNPs_47368 0 0 0 0 1 ERICH4 chr19:41949911 3'AG 41949911 Downstream 73bp
chr19 51769091 51769091 1 + C T COAD 51769091 + 51769071 51769111 41 GATCCAGGGTGCTATCTATGCGGGAATTGTAATTGCGCTGC GATCCAGGGTGCTATCTATGTGGGAATTGTAATTGCGCTGC Direct Loss 0.97304248473441 0 0.8020841 0.44415727 prediction 0.946084969468821 Functional Loss - SIGLECL1 ENSG00000179213 CDS Human protein_coding chr19:51769091 chr19:51769091 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_47371 0 0 0 1 2 SIGLECL1 chr19:51769031 3'AG 51769031 Downstream 61bp
chr19 51769091 51769091 1 + C T COAD 51769091 + 51769071 51769111 41 GATCCAGGGTGCTATCTATGCGGGAATTGTAATTGCGCTGC GATCCAGGGTGCTATCTATGTGGGAATTGTAATTGCGCTGC Direct Loss 0.97304248473441 0 0.8020841 0.44415727 prediction 0.946084969468821 Functional Loss - SIGLECL1 ENSG00000179213 CDS Human protein_coding chr19:51769091 chr19:51769091 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_47371 0 0 0 1 2 SIGLECL1 chr19:51769136 5'GT 51769136 Upstream 46bp
chr19 1434806 1434806 1 + C T STAD 1434806 + 1434786 1434826 41 AGCCAGCAGCCTCCTTCCTACGGGGGTCCCTCCGTGCCAGG AGCCAGCAGCCTCCTTCCTATGGGGGTCCCTCCGTGCCAGG Direct Loss 0.972986176483532 0 0.93506676 0.91508496 prediction 0.945972352967065 Functional Loss - DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434806 chr19:1434806 synonymous SNV . 0 21 hm5C_associated_SNPs_47376 0 0 1 0 1 DAZAP1 chr19:1434736 3'AG 1434736 Downstream 71bp
chrX 118708868 118708868 1 + C T DLBC 118708868 + 118708848 118708888 41 GTCTGTCTTCCCGAAGGTTGCAGGAGGATCCTCCAGCCGGA GTCTGTCTTCCCGAAGGTTGTAGGAGGATCCTCCAGCCGGA Direct Loss 0.972918815761479 0 0.9427378 0.92630273 prediction 0.945837631522958 Functional Loss - UBE2A ENSG00000077721 CDS Human protein_coding chrX:118708868 chrX:118708868 stopgain 0.988 1 21 hm5C_associated_SNPs_47377 0 0 1 0 2 UBE2A chrX:118708864 3'AG 118708864 Downstream 5bp
chrX 118708868 118708868 1 + C T DLBC 118708868 + 118708848 118708888 41 GTCTGTCTTCCCGAAGGTTGCAGGAGGATCCTCCAGCCGGA GTCTGTCTTCCCGAAGGTTGTAGGAGGATCCTCCAGCCGGA Direct Loss 0.972918815761479 0 0.9427378 0.92630273 prediction 0.945837631522958 Functional Loss - UBE2A ENSG00000077721 CDS Human protein_coding chrX:118708868 chrX:118708868 stopgain 0.988 1 21 hm5C_associated_SNPs_47377 0 0 1 0 2 UBE2A chrX:118708944 5'GT 118708944 Upstream 77bp
chr7 150267004 150267004 1 + C G OV 150267004 + 150266984 150267024 41 GCGACAATGGCAGCCCAATACGGCAGTATGAGCTTCAACCC GCGACAATGGCAGCCCAATAGGGCAGTATGAGCTTCAACCC Direct Loss 0.972864158756895 0 0.18480253 0.3160497 prediction 0.94572831751379 Functional Loss - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150267004 chr7:150267004 stopgain 0.000 0 21 hm5C_associated_SNPs_47379 0 0 0 0 3 GIMAP4 chr7:150266976 3'AG 150266976 Downstream 29bp
chr7 150267004 150267004 1 + C G OV 150267004 + 150266984 150267024 41 GCGACAATGGCAGCCCAATACGGCAGTATGAGCTTCAACCC GCGACAATGGCAGCCCAATAGGGCAGTATGAGCTTCAACCC Direct Loss 0.972864158756895 0 0.18480253 0.3160497 prediction 0.94572831751379 Functional Loss - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150267004 chr7:150267004 stopgain 0.000 0 21 hm5C_associated_SNPs_47379 0 0 0 0 3 GIMAP4 chr7:150267047 5'GT 150267047 Upstream 44bp
chr7 150267004 150267004 1 + C G OV 150267004 + 150266984 150267024 41 GCGACAATGGCAGCCCAATACGGCAGTATGAGCTTCAACCC GCGACAATGGCAGCCCAATAGGGCAGTATGAGCTTCAACCC Direct Loss 0.972864158756895 0 0.18480253 0.3160497 prediction 0.94572831751379 Functional Loss - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150267004 chr7:150267004 stopgain 0.000 0 21 hm5C_associated_SNPs_47379 0 0 0 0 3 GIMAP4 chr7:150267089 5'GT 150267089 Upstream 86bp
chr15 44829397 44829397 1 + C A LUAD 44829397 + 44829377 44829417 41 TCACACCCGGCTCGAGATGGCGGCGGCGGCGGCGGCGGCGG TCACACCCGGCTCGAGATGGAGGCGGCGGCGGCGGCGGCGG Direct Loss 0.972815703367696 0 0.8988979 0.8979825 prediction 0.945631406735392 Functional Loss - EIF3J ENSG00000104131 CDS Human protein_coding chr15:44829397 chr15:44829397 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_47382 0 0 1 0 1 EIF3J chr15:44829435 5'GT 44829435 Upstream 39bp
chrX 102632528 102632528 1 + C A HNSC 102632528 + 102632508 102632548 41 ACCAGCCTGCAGGAAATCGACGGGGACAGGCTCGCCGACTT ACCAGCCTGCAGGAAATCGAAGGGGACAGGCTCGCCGACTT Direct Loss 0.972800670619791 0 0.9271346 0.9316721 prediction 0.945601341239583 Functional Loss - BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632528 chrX:102632528 synonymous SNV . 0 21 hm5C_associated_SNPs_47383 0 0 1 0 1 BEX3 chrX:102632438 3'AG 102632438 Downstream 91bp
chr22 45691472 45691472 1 + C G BLCA 45691472 + 45691452 45691492 41 GTTCTGATGGGGAAACGACTCACGACTCCCAAATCACTCAG GTTCTGATGGGGAAACGACTGACGACTCCCAAATCACTCAG Direct Loss 0.972743861255828 0 0.031202823 0.043818533 prediction 0.945487722511656 Functional Loss - UPK3A ENSG00000100373 CDS Human protein_coding chr22:45691472 chr22:45691472 nonsynonymous SNV 0.791 4 21 hm5C_associated_SNPs_47387 0 0 0 0 1 UPK3A chr22:45691441 3'AG 45691441 Downstream 32bp
chr19 51981876 51981876 1 + C A UCEC 51981876 + 51981856 51981896 41 CTCTGGAGGGACCCCTCCTCCTGGAGGACCCCAGGCAGCTC CTCTGGAGGGACCCCTCCTCATGGAGGACCCCAGGCAGCTC Direct Loss 0.972559885954878 0 0.83147985 0.8760753 prediction 0.945119771909755 Functional Loss - CEACAM18 ENSG00000213822 CDS Human protein_coding chr19:51981876 chr19:51981876 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_47396 0 0 0 0 1 CEACAM18 chr19:51981948 5'GT 51981948 Upstream 73bp
chr7 102715804 102715804 1 + C T rs7798381 102715804 + 102715784 102715824 41 ACTGCATTTACAGGCTGACCCGGGGTCGGCGGCGGGGCGAC ACTGCATTTACAGGCTGACCTGGGGTCGGCGGCGGGGCGAC Direct Loss 0.972556929264679 0 0.93472475 0.92098105 prediction 0.945113858529358 Functional Loss - ARMC10 ENSG00000170632 CDS Human protein_coding chr7:102715804 chr7:102715804 nonsynonymous SNV 0.021 2 21 hm5C_associated_SNPs_47397 0 0 0 0 1 ARMC10 chr7:102715858 5'GT 102715858 Upstream 55bp
chr2 70122303 70122303 1 + C T UCEC 70122303 + 70122283 70122323 41 CCAGGTCTCGGGAGAGAGATCGGAGAAGGAGCCGCTCGCGA CCAGGTCTCGGGAGAGAGATTGGAGAAGGAGCCGCTCGCGA Direct Loss 0.972538949755274 0 0.9272214 0.9108485 prediction 0.945077899510548 Functional Loss - SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70122303 chr2:70122303 nonsynonymous SNV 0.994 3 21 hm5C_associated_SNPs_47399 0 0 1 0 2 SNRNP27 chr2:70122226 3'AG 70122226 Downstream 78bp
chr2 70122303 70122303 1 + C T UCEC 70122303 + 70122283 70122323 41 CCAGGTCTCGGGAGAGAGATCGGAGAAGGAGCCGCTCGCGA CCAGGTCTCGGGAGAGAGATTGGAGAAGGAGCCGCTCGCGA Direct Loss 0.972538949755274 0 0.9272214 0.9108485 prediction 0.945077899510548 Functional Loss - SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70122303 chr2:70122303 nonsynonymous SNV 0.994 3 21 hm5C_associated_SNPs_47399 0 0 1 0 2 SNRNP27 chr2:70122346 5'GT 70122346 Upstream 44bp
chr19 42828914 42828914 1 + C T UCEC 42828914 + 42828894 42828934 41 GCCCCGAGCGGCGCCGGATTCTGGGCTCCCGCTGTTCCGTG GCCCCGAGCGGCGCCGGATTTTGGGCTCCCGCTGTTCCGTG Direct Loss 0.972489062874034 0 0.8867361 0.8577451 prediction 0.944978125748068 Functional Loss - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42828914 chr19:42828914 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_47403 0 0 1 0 1 TMEM145 chr19:42828889 3'AG 42828889 Downstream 26bp
chr1 210012275 210012275 1 + C T LUSC 210012275 + 210012255 210012295 41 TACTGATAGTGGTGCCATTCCGGGAAGCTGCTTTGCGGGTG TACTGATAGTGGTGCCATTCTGGGAAGCTGCTTTGCGGGTG Direct Loss 0.972392447334246 0 0.88177466 0.7659002 prediction 0.944784894668492 Functional Loss - DIEXF ENSG00000117597 CDS Human protein_coding chr1:210012275 chr1:210012275 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_47407 0 0 1 0 1 DIEXF chr1:210012254 3'AG 210012254 Downstream 22bp
chr7 100779051 100779051 1 + C T PAAD 100779051 + 100779031 100779071 41 AAAGTGAAGATCGAGGTGAACGAGAGTGGCACGGTGGCCTC AAAGTGAAGATCGAGGTGAATGAGAGTGGCACGGTGGCCTC Direct Loss 0.972370570690026 0 0.86948127 0.87608904 prediction 0.944741141380051 Functional Loss - SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100779051 chr7:100779051 synonymous SNV . 0 21 hm5C_associated_SNPs_47411 0 0 1 0 2 SERPINE1 chr7:100778996 3'AG 100778996 Downstream 56bp
chr7 100779051 100779051 1 + C T PAAD 100779051 + 100779031 100779071 41 AAAGTGAAGATCGAGGTGAACGAGAGTGGCACGGTGGCCTC AAAGTGAAGATCGAGGTGAATGAGAGTGGCACGGTGGCCTC Direct Loss 0.972370570690026 0 0.86948127 0.87608904 prediction 0.944741141380051 Functional Loss - SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100779051 chr7:100779051 synonymous SNV . 0 21 hm5C_associated_SNPs_47411 0 0 1 0 2 SERPINE1 chr7:100779082 5'GT 100779082 Upstream 32bp
chr16 30094990 30094990 1 + C T COAD 30094990 + 30094970 30095010 41 CTGTAGATCTTCTGCGTGCACGGGGGCCTCTCCCCCTCCAT CTGTAGATCTTCTGCGTGCATGGGGGCCTCTCCCCCTCCAT Direct Loss 0.9723350042542 0 0.95154905 0.94242173 prediction 0.944670008508401 Functional Loss - PPP4C ENSG00000149923 CDS Human protein_coding chr16:30094990 chr16:30094990 synonymous SNV . 0 21 hm5C_associated_SNPs_47414 0 0 1 0 1 PPP4C chr16:30094976 3'AG 30094976 Downstream 15bp
chr14 24772341 24772341 1 + C G rs201976440 24772341 + 24772321 24772361 41 TGTATTGGCCCAGGGCCACCCAGGGGTAGTCATTGCCCTGG TGTATTGGCCCAGGGCCACCGAGGGGTAGTCATTGCCCTGG Direct Loss 0.972197083770563 0 0.9539491 0.93941903 prediction 0.944394167541126 Functional Loss - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24772341 chr14:24772341 nonsynonymous SNV 0.994 0 21 hm5C_associated_SNPs_47425 0 0 1 0 2 NOP9 chr14:24772280 3'AG 24772280 Downstream 62bp
chr14 24772341 24772341 1 + C G rs201976440 24772341 + 24772321 24772361 41 TGTATTGGCCCAGGGCCACCCAGGGGTAGTCATTGCCCTGG TGTATTGGCCCAGGGCCACCGAGGGGTAGTCATTGCCCTGG Direct Loss 0.972197083770563 0 0.9539491 0.93941903 prediction 0.944394167541126 Functional Loss - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24772341 chr14:24772341 nonsynonymous SNV 0.994 0 21 hm5C_associated_SNPs_47425 0 0 1 0 2 NOP9 chr14:24772420 5'GT 24772420 Upstream 80bp
chr19 35512707 35512707 1 + C T rs138099889 35512707 + 35512687 35512727 41 CCCCTGAGCTGGCGGGCTCACGGGGACGGGCCCCAGCACCC CCCCTGAGCTGGCGGGCTCATGGGGACGGGCCCCAGCACCC Direct Loss 0.972194432370862 0 0.9340384 0.9060728 prediction 0.944388864741724 Functional Loss - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35512707 chr19:35512707 synonymous SNV . 0 21 hm5C_associated_SNPs_47426 0 0 1 0 1 GRAMD1A chr19:35512768 5'GT 35512768 Upstream 62bp
chr13 113974779 113974779 1 + C T UCEC 113974779 + 113974759 113974799 41 ACCGTCCTGCTCTTCCAGTTCGGGATGGTGAGGCTGGGGCG ACCGTCCTGCTCTTCCAGTTTGGGATGGTGAGGCTGGGGCG Direct Loss 0.972188346510689 0 0.92905855 0.9190764 prediction 0.944376693021377 Functional Loss - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113974779 chr13:113974779 synonymous SNV . 0 21 hm5C_associated_SNPs_47427 0 0 1 0 1 LAMP1 chr13:113974785 5'GT 113974785 Upstream 7bp
chr16 2512522 2512522 1 + C T SKCM 2512522 + 2512502 2512542 41 GCGCATGAGGGAGGAGCTCTCGGCAGGTCAGTGGGTCCTGG GCGCATGAGGGAGGAGCTCTTGGCAGGTCAGTGGGTCCTGG Direct Loss 0.972119725099873 0 0.93187034 0.83463097 prediction 0.944239450199746 Functional Loss - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2512522 chr16:2512522 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_47431 0 0 1 0 1 C16orf59 chr16:2512527 5'GT 2512527 Upstream 6bp
chr16 2571030 2571030 1 + C T UCEC 2571030 + 2571010 2571050 41 AGCCACGGAGGACGTGGGTTCGGGGGTTGCCCTCGTGGCCC AGCCACGGAGGACGTGGGTTTGGGGGTTGCCCTCGTGGCCC Direct Loss 0.972062928097555 0 0.9386984 0.90318257 prediction 0.944125856195111 Functional Loss - AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2571030 chr16:2571030 nonsynonymous SNV 0.949 0 21 hm5C_associated_SNPs_47435 0 0 1 0 2 AMDHD2 chr16:2570985 3'AG 2570985 Downstream 46bp
chr16 2571030 2571030 1 + C T UCEC 2571030 + 2571010 2571050 41 AGCCACGGAGGACGTGGGTTCGGGGGTTGCCCTCGTGGCCC AGCCACGGAGGACGTGGGTTTGGGGGTTGCCCTCGTGGCCC Direct Loss 0.972062928097555 0 0.9386984 0.90318257 prediction 0.944125856195111 Functional Loss - AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2571030 chr16:2571030 nonsynonymous SNV 0.949 0 21 hm5C_associated_SNPs_47435 0 0 1 0 2 AMDHD2 chr16:2571124 5'GT 2571124 Upstream 95bp
chr22 29694821 29694821 1 + C T UCEC 29694821 + 29694801 29694841 41 CAAGAGGACCCCGGGGTTCCCGAGGGAACCCCTCTGGAGGA CAAGAGGACCCCGGGGTTCCTGAGGGAACCCCTCTGGAGGA Direct Loss 0.972015755560479 0 0.93270147 0.85100424 prediction 0.944031511120959 Functional Loss - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29694821 chr22:29694821 stopgain 0.947 0 21 hm5C_associated_SNPs_47440 0 0 1 0 2 EWSR1 chr22:29694723 3'AG 29694723 Downstream 99bp
chr22 29694821 29694821 1 + C T UCEC 29694821 + 29694801 29694841 41 CAAGAGGACCCCGGGGTTCCCGAGGGAACCCCTCTGGAGGA CAAGAGGACCCCGGGGTTCCTGAGGGAACCCCTCTGGAGGA Direct Loss 0.972015755560479 0 0.93270147 0.85100424 prediction 0.944031511120959 Functional Loss - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29694821 chr22:29694821 stopgain 0.947 0 21 hm5C_associated_SNPs_47440 0 0 1 0 2 EWSR1 chr22:29694885 5'GT 29694885 Upstream 65bp
chr6 26463515 26463515 1 + C T rs145913124 26463515 + 26463495 26463535 41 TCAATGAGGGGCCATGAAGACGGGGGCATCCGGCTGGAGTG TCAATGAGGGGCCATGAAGATGGGGGCATCCGGCTGGAGTG Direct Loss 0.971915132267697 0 0.9076489 0.85946786 prediction 0.943830264535395 Functional Loss - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26463515 chr6:26463515 synonymous SNV . 0 21 hm5C_associated_SNPs_47444 0 0 1 0 1 BTN2A1 chr6:26463472 3'AG 26463472 Downstream 44bp
chr19 6746083 6746083 1 + C T rs552901206 6746083 + 6746063 6746103 41 CCTGGGGGGCCCCGTACCCTCGGCATTGCCTAACGGACCCC CCTGGGGGGCCCCGTACCCTTGGCATTGCCTAACGGACCCC Direct Loss 0.971909756092228 0 0.5099475 0.25530517 prediction 0.943819512184457 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6746083 chr19:6746083 nonsynonymous SNV 0.209 2 21 hm5C_associated_SNPs_47445 0 0 1 0 1 TRIP10 chr19:6746040 3'AG 6746040 Downstream 44bp
chr18 56887580 56887580 1 + C T UCEC 56887580 + 56887560 56887600 41 GCGAGCGGTCCCGCTGCCTGCGGGCGGAGGGACCGTGCTGA GCGAGCGGTCCCGCTGCCTGTGGGCGGAGGGACCGTGCTGA Direct Loss 0.971851892887489 0 0.9016596 0.84999746 prediction 0.943703785774978 Functional Loss - GRP ENSG00000134443 CDS Human protein_coding chr18:56887580 chr18:56887580 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_47449 0 0 0 0 1 GRP chr18:56887636 5'GT 56887636 Upstream 57bp
chr19 51359599 51359599 1 + C T COAD 51359599 + 51359579 51359619 41 TCTCGTGGCAGGGCAGTCTGCGGCGGTGTTCTGGTGCACCC TCTCGTGGCAGGGCAGTCTGTGGCGGTGTTCTGGTGCACCC Direct Loss 0.971813725698901 0 0.89988166 0.70569086 prediction 0.943627451397802 Functional Loss - KLK3 ENSG00000142515 CDS Human protein_coding chr19:51359599 chr19:51359599 synonymous SNV . 0 21 hm5C_associated_SNPs_47454 0 0 0 0 1 KLK3 chr19:51359655 5'GT 51359655 Upstream 57bp
chr12 132636059 132636059 1 + C T rs368698447 132636059 + 132636039 132636079 41 GCCTACCTGGTGGCCGCCTTCGCCAAGCGGCTGGCCCGCCT GCCTACCTGGTGGCCGCCTTTGCCAAGCGGCTGGCCCGCCT Direct Loss 0.97179293756036 0 0.943596 0.45715517 prediction 0.94358587512072 Functional Loss - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132636059 chr12:132636059 synonymous SNV . 0 21 hm5C_associated_SNPs_47455 0 0 1 0 1 NOC4L chr12:132636029 3'AG 132636029 Downstream 31bp
chr20 62505086 62505086 1 + C G BLCA 62505086 + 62505066 62505106 41 GAGAGGCACTGTGGAGAGCTCAAGAGGAGGCTGGGCCTCTC GAGAGGCACTGTGGAGAGCTGAAGAGGAGGCTGGGCCTCTC Direct Loss 0.97177459466637 0 0.9263997 0.9125458 prediction 0.943549189332739 Functional Loss - TPD52L2 ENSG00000101150 CDS Human protein_coding chr20:62505086 chr20:62505086 synonymous SNV . 0 21 hm5C_associated_SNPs_47456 0 0 1 0 2 TPD52L2 chr20:62505021 3'AG 62505021 Downstream 66bp
chr20 62505086 62505086 1 + C G BLCA 62505086 + 62505066 62505106 41 GAGAGGCACTGTGGAGAGCTCAAGAGGAGGCTGGGCCTCTC GAGAGGCACTGTGGAGAGCTGAAGAGGAGGCTGGGCCTCTC Direct Loss 0.97177459466637 0 0.9263997 0.9125458 prediction 0.943549189332739 Functional Loss - TPD52L2 ENSG00000101150 CDS Human protein_coding chr20:62505086 chr20:62505086 synonymous SNV . 0 21 hm5C_associated_SNPs_47456 0 0 1 0 2 TPD52L2 chr20:62505169 5'GT 62505169 Upstream 84bp
chr11 64889873 64889873 1 + C T KICH 64889873 + 64889853 64889893 41 GATGGAGAACCGGTGTCCAGCGGGGCTGCGGGCTACGGCTG GATGGAGAACCGGTGTCCAGTGGGGCTGCGGGCTACGGCTG Direct Loss 0.971757374910272 0 0.9188273 0.8778467 prediction 0.943514749820545 Functional Loss - MRPL49 ENSG00000149792 CDS Human protein_coding chr11:64889873 chr11:64889873 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47458 0 0 1 0 1 MRPL49 chr11:64889896 5'GT 64889896 Upstream 24bp
chr6 107349446 107349446 1 + C G rs562503506 107349446 + 107349426 107349466 41 GCCTGCAGTCCGCGCGGCCGCGGGGAGGGACGAGAGGGCCT GCCTGCAGTCCGCGCGGCCGGGGGGAGGGACGAGAGGGCCT Direct Loss 0.97172164227888 0 0.88493574 0.8970336 prediction 0.94344328455776 Functional Loss - C6orf203 ENSG00000130349 UTR5 Human protein_coding chr6:107349446 chr6:107349446 . . 0 21 hm5C_associated_SNPs_47459 0 0 1 0 1 C6orf203 chr6:107349475 5'GT 107349475 Upstream 30bp
chr1 906350 906350 1 + C T SKCM 906350 + 906330 906370 41 GAGAAGCAGACGGCCCTCCTCGGGGGGCCGCGGCGCTGCCA GAGAAGCAGACGGCCCTCCTTGGGGGGCCGCGGCGCTGCCA Direct Loss 0.971720634679971 0 0.9598491 0.9364785 prediction 0.943441269359942 Functional Loss - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:906350 chr1:906350 synonymous SNV . 0 21 hm5C_associated_SNPs_47460 0 0 0 0 2 PLEKHN1 chr1:906259 3'AG 906259 Downstream 92bp
chr1 906350 906350 1 + C T SKCM 906350 + 906330 906370 41 GAGAAGCAGACGGCCCTCCTCGGGGGGCCGCGGCGCTGCCA GAGAAGCAGACGGCCCTCCTTGGGGGGCCGCGGCGCTGCCA Direct Loss 0.971720634679971 0 0.9598491 0.9364785 prediction 0.943441269359942 Functional Loss - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:906350 chr1:906350 synonymous SNV . 0 21 hm5C_associated_SNPs_47460 0 0 0 0 2 PLEKHN1 chr1:906386 5'GT 906386 Upstream 37bp
chr9 93639979 93639979 1 + C T LUSC 93639979 + 93639959 93639999 41 CCGTACATCGTGCGGATGATCGGGATATGCGAGGCCGAGTC CCGTACATCGTGCGGATGATTGGGATATGCGAGGCCGAGTC Direct Loss 0.971705542490711 0 0.93012595 0.89371586 prediction 0.943411084981422 Functional Loss - SYK ENSG00000165025 CDS Human protein_coding chr9:93639979 chr9:93639979 synonymous SNV . 0 21 hm5C_associated_SNPs_47461 0 0 0 0 1 SYK chr9:93640062 5'GT 93640062 Upstream 84bp
chr12 56514379 56514379 1 + C T UCEC 56514379 + 56514359 56514399 41 GACAGCTATGCCAACGGTACCGGGAGCAGCGGTGGAGGCCC GACAGCTATGCCAACGGTACTGGGAGCAGCGGTGGAGGCCC Direct Loss 0.971684390886985 0 0.9140585 0.9038263 prediction 0.94336878177397 Functional Loss - ZC3H10 ENSG00000135482 CDS Human antisense chr12:56514379 chr12:56514379 synonymous SNV . 0 21 hm5C_associated_SNPs_47463 0 0 0 0 1 ZC3H10 chr12:56514295 3'AG 56514295 Downstream 85bp
chr13 76447803 76447803 1 + C T CESC 76447803 + 76447783 76447823 41 GGATAAAAAGACCGCAGTTTCGGGAATGATGATTTCGCTGG GGATAAAAAGACCGCAGTTTTGGGAATGATGATTTCGCTGG Direct Loss 0.971665297772754 0 0.9054364 0.8430909 prediction 0.943330595545508 Functional Loss - LMO7DN ENSG00000178734 CDS Human protein_coding chr13:76447803 chr13:76447803 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47464 0 0 0 0 2 LMO7DN chr13:76447793 3'AG 76447793 Downstream 11bp
chr13 76447803 76447803 1 + C T CESC 76447803 + 76447783 76447823 41 GGATAAAAAGACCGCAGTTTCGGGAATGATGATTTCGCTGG GGATAAAAAGACCGCAGTTTTGGGAATGATGATTTCGCTGG Direct Loss 0.971665297772754 0 0.9054364 0.8430909 prediction 0.943330595545508 Functional Loss - LMO7DN ENSG00000178734 CDS Human protein_coding chr13:76447803 chr13:76447803 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47464 0 0 0 0 2 LMO7DN chr13:76447870 5'GT 76447870 Upstream 68bp
chr17 73106432 73106432 1 + C T rs74697881 73106432 + 73106412 73106452 41 ACGTCGGGCGGCTGGGATACCTGCAGGCGCTGGTCACGGAA ACGTCGGGCGGCTGGGATACTTGCAGGCGCTGGTCACGGAA Direct Loss 0.971662523429305 0 0.83928806 0.76944387 prediction 0.94332504685861 Functional Loss - ARMC7 ENSG00000125449 CDS Human protein_coding chr17:73106432 chr17:73106432 synonymous SNV . 0 21 hm5C_associated_SNPs_47465 0 0 1 0 1 ARMC7 chr17:73106474 5'GT 73106474 Upstream 43bp
chr12 57167691 57167691 1 + C G rs146006697 57167691 + 57167671 57167711 41 ACTACCTTCTGCACTGGTACCGGGAGAGGCAGGTGGTGAGC ACTACCTTCTGCACTGGTACGGGGAGAGGCAGGTGGTGAGC Direct Loss 0.971645267759547 0 0.94020915 0.9377693 prediction 0.943290535519095 Functional Loss - HSD17B6 ENSG00000025423 CDS Human protein_coding chr12:57167691 chr12:57167691 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_47467 0 0 0 0 1 HSD17B6 chr12:57167618 3'AG 57167618 Downstream 74bp
chr19 34919421 34919421 1 + C T BLCA 34919421 + 34919401 34919441 41 GTGGTGGGGGCGGGCGGCATCGGCTGCGAGCTCCTCAAGAA GTGGTGGGGGCGGGCGGCATTGGCTGCGAGCTCCTCAAGAA Direct Loss 0.971629158014334 0 0.8523549 0.6170249 prediction 0.943258316028668 Functional Loss - UBA2 ENSG00000126261 CDS Human protein_coding chr19:34919421 chr19:34919421 synonymous SNV . 0 21 hm5C_associated_SNPs_47469 0 0 1 0 1 UBA2 chr19:34919475 5'GT 34919475 Upstream 55bp
chr12 1748923 1748923 1 + C T STAD 1748923 + 1748903 1748943 41 GCCATCAGCCGGGCCTGCCGCGAGGGCGAGCTCTCCACCTG GCCATCAGCCGGGCCTGCCGTGAGGGCGAGCTCTCCACCTG Direct Loss 0.971629046442403 0 0.9124005 0.89512765 prediction 0.943258092884805 Functional Loss - WNT5B ENSG00000111186 CDS Human protein_coding chr12:1748923 chr12:1748923 synonymous SNV . 0 21 hm5C_associated_SNPs_47470 0 0 0 0 1 WNT5B chr12:1748850 3'AG 1748850 Downstream 74bp
chr16 85689974 85689974 1 + C T LUSC 85689974 + 85689954 85689994 41 AGATGGACGAGGAGCTAAGGCGGGAGAGGGAGCGCGAGCGC AGATGGACGAGGAGCTAAGGTGGGAGAGGGAGCGCGAGCGC Direct Loss 0.97160649902597 0 0.8879895 0.69588035 prediction 0.94321299805194 Functional Loss - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85689974 chr16:85689974 nonsynonymous SNV 0.351 4 21 hm5C_associated_SNPs_47472 0 0 1 0 1 GSE1 chr16:85689949 3'AG 85689949 Downstream 26bp
chr20 52835653 52835653 1 + C T SKCM 52835653 + 52835633 52835673 41 GTTCAGTTGTATGCAAAATTCGGGAGCAACATAAACCTTGA GTTCAGTTGTATGCAAAATTTGGGAGCAACATAAACCTTGA Direct Loss 0.971578962340727 0 0.90103066 0.6283516 prediction 0.943157924681454 Functional Loss - PFDN4 ENSG00000101132 CDS Human protein_coding chr20:52835653 chr20:52835653 synonymous SNV . 0 21 hm5C_associated_SNPs_47474 0 0 1 0 1 PFDN4 chr20:52835558 3'AG 52835558 Downstream 96bp
chr11 125617637 125617637 1 + C T GBM 125617637 + 125617617 125617657 41 GATGTGCCACCTCCAGTTCCCAGGAGAAAAGTGCTCCAGAG GATGTGCCACCTCCAGTTCCTAGGAGAAAAGTGCTCCAGAG Direct Loss 0.971553309008659 0 0.9222683 0.88579047 prediction 0.943106618017318 Functional Loss - PATE1 ENSG00000171053 CDS Human protein_coding chr11:125617637 chr11:125617637 nonsynonymous SNV 0.770 3 21 hm5C_associated_SNPs_47475 0 0 0 0 2 PATE1 chr11:125617595 3'AG 125617595 Downstream 43bp
chr11 125617637 125617637 1 + C T GBM 125617637 + 125617617 125617657 41 GATGTGCCACCTCCAGTTCCCAGGAGAAAAGTGCTCCAGAG GATGTGCCACCTCCAGTTCCTAGGAGAAAAGTGCTCCAGAG Direct Loss 0.971553309008659 0 0.9222683 0.88579047 prediction 0.943106618017318 Functional Loss - PATE1 ENSG00000171053 CDS Human protein_coding chr11:125617637 chr11:125617637 nonsynonymous SNV 0.770 3 21 hm5C_associated_SNPs_47475 0 0 0 0 2 PATE1 chr11:125617717 5'GT 125617717 Upstream 81bp
chr9 91150578 91150578 1 + C T BLCA 91150578 + 91150558 91150598 41 TGTCAGCCGACGGCAGCTCCCAGGAGATGCTGGACTTCATG TGTCAGCCGACGGCAGCTCCTAGGAGATGCTGGACTTCATG Direct Loss 0.971532629536851 0 0.90092385 0.8635284 prediction 0.943065259073702 Functional Loss - NXNL2 ENSG00000130045 CDS Human protein_coding chr9:91150578 chr9:91150578 stopgain 0.700 0 21 hm5C_associated_SNPs_47477 0 0 0 0 1 NXNL2 chr9:91150651 5'GT 91150651 Upstream 74bp
chr1 203452396 203452396 1 + C T COAD 203452396 + 203452376 203452416 41 CCAACAAGACGACCAAGACCCGGGACTGGGCCCGGGCGCAG CCAACAAGACGACCAAGACCTGGGACTGGGCCCGGGCGCAG Direct Loss 0.971436089517157 0 0.877247 0.6011816 prediction 0.942872179034313 Functional Loss - PRELP ENSG00000188783 CDS Human protein_coding chr1:203452396 chr1:203452396 synonymous SNV . 0 21 hm5C_associated_SNPs_47480 0 0 0 0 1 PRELP chr1:203452297 3'AG 203452297 Downstream 100bp
chr12 6948245 6948245 1 + C T BLCA 6948245 + 6948225 6948265 41 ATGGGGTGTGGGCCGTGACTCGGGGACGGCGCTGTGCCCTG ATGGGGTGTGGGCCGTGACTTGGGGACGGCGCTGTGCCCTG Direct Loss 0.971328236200804 0 0.9446006 0.905161 prediction 0.942656472401607 Functional Loss - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6948245 chr12:6948245 nonsynonymous SNV 0.959 2 21 hm5C_associated_SNPs_47483 0 0 1 0 2 P3H3 chr12:6948164 3'AG 6948164 Downstream 82bp
chr12 6948245 6948245 1 + C T BLCA 6948245 + 6948225 6948265 41 ATGGGGTGTGGGCCGTGACTCGGGGACGGCGCTGTGCCCTG ATGGGGTGTGGGCCGTGACTTGGGGACGGCGCTGTGCCCTG Direct Loss 0.971328236200804 0 0.9446006 0.905161 prediction 0.942656472401607 Functional Loss - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6948245 chr12:6948245 nonsynonymous SNV 0.959 2 21 hm5C_associated_SNPs_47483 0 0 1 0 2 P3H3 chr12:6948304 5'GT 6948304 Upstream 60bp
chr14 24607728 24607728 1 + C A LUSC 24607728 + 24607708 24607748 41 AGCTGGATGAGGCAGAGTACCGGGACATCCGGCTGATGGTC AGCTGGATGAGGCAGAGTACAGGGACATCCGGCTGATGGTC Direct Loss 0.971302025514078 0 0.9030776 0.8239191 prediction 0.942604051028157 Functional Loss - PSME1 ENSG00000092010 CDS Human protein_coding chr14:24607728 chr14:24607728 synonymous SNV . 0 21 hm5C_associated_SNPs_47484 0 0 1 0 1 PSME1 chr14:24607769 5'GT 24607769 Upstream 42bp
chr11 134123521 134123521 1 + C T LUSC 134123521 + 134123501 134123541 41 TGGAGCGGCTGCCGGCGTTTCGGGGCGCGCCTCGGCTGCCT TGGAGCGGCTGCCGGCGTTTTGGGGCGCGCCTCGGCTGCCT Direct Loss 0.971289456933385 0 0.95048 0.92785466 prediction 0.942578913866771 Functional Loss - ACAD8 ENSG00000151498 CDS Human protein_coding chr11:134123521 chr11:134123521 synonymous SNV . 0 21 hm5C_associated_SNPs_47485 0 0 1 0 1 ACAD8 chr11:134123603 5'GT 134123603 Upstream 83bp
chr21 46387037 46387037 1 + C T BLCA 46387037 + 46387017 46387057 41 GTGGGGGACCTGCACCCTCTCAGGGATGCCCTGCCCGAGCT GTGGGGGACCTGCACCCTCTTAGGGATGCCCTGCCCGAGCT Direct Loss 0.97127178865199 0 0.94482815 0.9185896 prediction 0.942543577303979 Functional Loss - FAM207A ENSG00000160256 CDS Human protein_coding chr21:46387037 chr21:46387037 synonymous SNV . 0 21 hm5C_associated_SNPs_47487 0 0 1 0 2 FAM207A chr21:46386949 3'AG 46386949 Downstream 89bp
chr21 46387037 46387037 1 + C T BLCA 46387037 + 46387017 46387057 41 GTGGGGGACCTGCACCCTCTCAGGGATGCCCTGCCCGAGCT GTGGGGGACCTGCACCCTCTTAGGGATGCCCTGCCCGAGCT Direct Loss 0.97127178865199 0 0.94482815 0.9185896 prediction 0.942543577303979 Functional Loss - FAM207A ENSG00000160256 CDS Human protein_coding chr21:46387037 chr21:46387037 synonymous SNV . 0 21 hm5C_associated_SNPs_47487 0 0 1 0 2 FAM207A chr21:46387096 5'GT 46387096 Upstream 60bp
chr3 37061906 37061906 1 + C T LUSC 37061906 + 37061886 37061926 41 GAGCGGGTGCAGCAGCACATCGAGAGCAAGCTCCTGGGCTC GAGCGGGTGCAGCAGCACATTGAGAGCAAGCTCCTGGGCTC Direct Loss 0.971255204557059 0 0.89611363 0.8194604 prediction 0.942510409114119 Functional Loss - MLH1 ENSG00000076242 CDS Human protein_coding chr3:37061906 chr3:37061906 synonymous SNV . 0 21 hm5C_associated_SNPs_47488 0 0 0 0 1 MLH1 chr3:37061954 5'GT 37061954 Upstream 49bp
chr13 50204648 50204648 1 + C A rs147389782 50204648 + 50204628 50204668 41 GGTGATGATGGGCCTGGACTCGGCGGGCAAGACCACGCTCC GGTGATGATGGGCCTGGACTAGGCGGGCAAGACCACGCTCC Direct Loss 0.971154070400392 0 0.9285948 0.8584722 prediction 0.942308140800784 Functional Loss - ARL11 ENSG00000152213 CDS Human protein_coding chr13:50204648 chr13:50204648 stopgain 0.071 0 21 hm5C_associated_SNPs_47493 0 0 0 0 1 ARL11 chr13:50204566 3'AG 50204566 Downstream 83bp
chr12 51203301 51203301 1 + C A GBM 51203301 + 51203281 51203321 41 AAAAGGAGACGGAGAAAATTCTGGAGTTTCTGCTGCTGTCA AAAAGGAGACGGAGAAAATTATGGAGTTTCTGCTGCTGTCA Direct Loss 0.971101882430352 0 0.8634237 0.7615187 prediction 0.942203764860704 Functional Loss - ATF1 ENSG00000123268 CDS Human protein_coding chr12:51203301 chr12:51203301 nonsynonymous SNV 0.956 1 21 hm5C_associated_SNPs_47496 0 0 1 0 2 ATF1 chr12:51203239 3'AG 51203239 Downstream 63bp
chr12 51203301 51203301 1 + C A GBM 51203301 + 51203281 51203321 41 AAAAGGAGACGGAGAAAATTCTGGAGTTTCTGCTGCTGTCA AAAAGGAGACGGAGAAAATTATGGAGTTTCTGCTGCTGTCA Direct Loss 0.971101882430352 0 0.8634237 0.7615187 prediction 0.942203764860704 Functional Loss - ATF1 ENSG00000123268 CDS Human protein_coding chr12:51203301 chr12:51203301 nonsynonymous SNV 0.956 1 21 hm5C_associated_SNPs_47496 0 0 1 0 2 ATF1 chr12:51203372 5'GT 51203372 Upstream 72bp
chr8 10555444 10555444 1 + C T COAD 10555444 + 10555424 10555464 41 AAGAGGCGCTGCGCCTGGAGCGGGAGAACTCGCTGCAGAAG AAGAGGCGCTGCGCCTGGAGTGGGAGAACTCGCTGCAGAAG Direct Loss 0.971087014491576 0 0.9274168 0.89794624 prediction 0.942174028983152 Functional Loss - C8orf74 ENSG00000171060 CDS Human protein_coding chr8:10555444 chr8:10555444 nonsynonymous SNV 0.003 2 21 hm5C_associated_SNPs_47498 0 0 0 0 1 C8orf74 chr8:10555515 5'GT 10555515 Upstream 72bp
chr1 16070745 16070745 1 + C T UCEC 16070745 + 16070725 16070765 41 CCTGTGGCCTGAGCTTCCTGCAGGAGGGCGCCCCTCACCGC CCTGTGGCCTGAGCTTCCTGTAGGAGGGCGCCCCTCACCGC Direct Loss 0.971054846128577 0 0.8929008 0.74453825 prediction 0.942109692257154 Functional Loss - TMEM82 ENSG00000162460 CDS Human protein_coding chr1:16070745 chr1:16070745 stopgain 0.998 0 21 hm5C_associated_SNPs_47501 0 0 0 0 1 TMEM82 chr1:16070655 3'AG 16070655 Downstream 91bp
chr20 35517691 35517691 1 + C T rs148426788 35517691 + 35517671 35517711 41 GGTTGGATGGAGACTTGTTCCGCGGGGGAAGCTCCCCTTGC GGTTGGATGGAGACTTGTTCTGCGGGGGAAGCTCCCCTTGC Direct Loss 0.971012545396227 0 0.9299403 0.9282608 prediction 0.942025090792453 Functional Loss - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35517691 chr20:35517691 nonsynonymous SNV 0.174 2 21 hm5C_associated_SNPs_47503 0 0 0 0 1 TLDC2 chr20:35517654 3'AG 35517654 Downstream 38bp
chr16 85952315 85952315 1 + C T rs61995933 85952315 + 85952295 85952335 41 CTGTGCCAGGGCCGCGTGTTCTGCAGCGGCAACGCCGTGGT CTGTGCCAGGGCCGCGTGTTTTGCAGCGGCAACGCCGTGGT Direct Loss 0.970992802760151 0 0.39237204 0.5242967 prediction 0.941985605520302 Functional Loss - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85952315 chr16:85952315 synonymous SNV . 0 21 hm5C_associated_SNPs_47505 0 0 0 0 1 IRF8 chr16:85952409 5'GT 85952409 Upstream 95bp
chr1 173454569 173454569 1 + C T BLCA 173454569 + 173454549 173454589 41 CCATCATCGATGATAGGAATCGGGAGCTTGCCATCCTGTTG CCATCATCGATGATAGGAATTGGGAGCTTGCCATCCTGTTG Direct Loss 0.970977565666125 0 0.9118811 0.65548563 prediction 0.941955131332251 Functional Loss - PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173454569 chr1:173454569 nonsynonymous SNV 0.398 3 21 hm5C_associated_SNPs_47507 0 0 1 0 2 PRDX6 chr1:173454500 3'AG 173454500 Downstream 70bp
chr1 173454569 173454569 1 + C T BLCA 173454569 + 173454549 173454589 41 CCATCATCGATGATAGGAATCGGGAGCTTGCCATCCTGTTG CCATCATCGATGATAGGAATTGGGAGCTTGCCATCCTGTTG Direct Loss 0.970977565666125 0 0.9118811 0.65548563 prediction 0.941955131332251 Functional Loss - PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173454569 chr1:173454569 nonsynonymous SNV 0.398 3 21 hm5C_associated_SNPs_47507 0 0 1 0 2 PRDX6 chr1:173454646 5'GT 173454646 Upstream 78bp
chr17 76134132 76134132 1 + C T LGG 76134132 + 76134112 76134152 41 GGTTCTGGGCCTGGCTGGAACGGGAGGAGTTCCTGGTCCCC GGTTCTGGGCCTGGCTGGAATGGGAGGAGTTCCTGGTCCCC Direct Loss 0.970971550756946 0 0.93560326 0.922577 prediction 0.941943101513892 Functional Loss - TMC8 ENSG00000167895 CDS Human protein_coding chr17:76134132 chr17:76134132 nonsynonymous SNV 0.993 3 21 hm5C_associated_SNPs_47508 0 0 1 0 1 TMC8 chr17:76134086 3'AG 76134086 Downstream 47bp
chr14 20924986 20924986 1 + C T HNSC 20924986 + 20924966 20925006 41 GTGGCGTGGGCCTGCTTTCCCGCCAGTGCCCACTCAAAGTT GTGGCGTGGGCCTGCTTTCCTGCCAGTGCCCACTCAAAGTT Direct Loss 0.970886058098691 0 0.16893655 0.16697937 prediction 0.941772116197382 Functional Loss - APEX1 ENSG00000100823 CDS Human protein_coding chr14:20924986 chr14:20924986 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_47511 0 0 1 0 1 APEX1 chr14:20925019 5'GT 20925019 Upstream 34bp
chr17 6927092 6927092 1 + C T CESC 6927092 + 6927072 6927112 41 CTCAACGAGCTGCGCCTGCGCGGGATCCTCACTGACGTCAC CTCAACGAGCTGCGCCTGCGTGGGATCCTCACTGACGTCAC Direct Loss 0.970828432661515 0 0.8290272 0.67794824 prediction 0.941656865323031 Functional Loss - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6927092 chr17:6927092 synonymous SNV . 0 21 hm5C_associated_SNPs_47515 0 0 0 0 1 BCL6B chr17:6927169 5'GT 6927169 Upstream 78bp
chr5 139189358 139189358 1 + C T SKCM 139189358 + 139189338 139189378 41 GCAGAGGGGGACAATGCTTCCAGGAGCCTCTACCCAGATGC GCAGAGGGGGACAATGCTTCTAGGAGCCTCTACCCAGATGC Direct Loss 0.970787771491918 0 0.90379393 0.8946283 prediction 0.941575542983835 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139189358 chr5:139189358 synonymous SNV . 0 21 hm5C_associated_SNPs_47516 0 0 0 0 1 PSD2 chr5:139189396 5'GT 139189396 Upstream 39bp
chr11 32610244 32610244 1 + C T SKCM 32610244 + 32610224 32610264 41 GTGAAAAGCTGGTCAAATTTCGCGAAGGTGAACGCCCGTCT GTGAAAAGCTGGTCAAATTTTGCGAAGGTGAACGCCCGTCT Direct Loss 0.970762339235932 0 0.56807196 0.32973987 prediction 0.941524678471864 Functional Loss - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32610244 chr11:32610244 nonsynonymous SNV 0.986 2 21 hm5C_associated_SNPs_47518 0 0 1 0 1 EIF3M chr11:32610278 5'GT 32610278 Upstream 35bp
chr1 32751144 32751144 1 + C G LUAD 32751144 + 32751124 32751164 41 ACCCGGAGGTGATTCAGAACCTGGAGCGAGGCTACCGCATG ACCCGGAGGTGATTCAGAACGTGGAGCGAGGCTACCGCATG Direct Loss 0.970724665584964 0 0.2902942 0.32369077 prediction 0.941449331169929 Functional Loss - LCK ENSG00000182866 CDS Human protein_coding chr1:32751144 chr1:32751144 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_47520 0 0 0 0 1 LCK chr1:32751115 3'AG 32751115 Downstream 30bp
chr5 110560256 110560256 1 + C G BLCA 110560256 + 110560236 110560276 41 GCCAGTGCGGCCCCGGGGACCGCGAGCCTCGTCCCGGATTA GCCAGTGCGGCCCCGGGGACGGCGAGCCTCGTCCCGGATTA Direct Loss 0.970686240930806 0 0.5596501 0.6054999 prediction 0.941372481861612 Functional Loss - CAMK4 ENSG00000152495 CDS Human protein_coding chr5:110560256 chr5:110560256 synonymous SNV . 0 21 hm5C_associated_SNPs_47521 0 0 0 0 1 CAMK4 chr5:110560342 5'GT 110560342 Upstream 87bp
chr3 41275738 41275738 1 + C T SKCM 41275738 + 41275718 41275758 41 AGTTGCTTGTTCGTGCACATCAGGATACCCAGCGCCGTACG AGTTGCTTGTTCGTGCACATTAGGATACCCAGCGCCGTACG Direct Loss 0.970646181438238 0 0.8894489 0.8767148 prediction 0.941292362876477 Functional Loss - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41275738 chr3:41275738 stopgain 0.586 1 21 hm5C_associated_SNPs_47525 0 0 1 1 1 CTNNB1 chr3:41275788 5'GT 41275788 Upstream 51bp
chr17 9536293 9536293 1 + C T rs187332485 9536293 + 9536273 9536313 41 GCTCACAGGATCGGCGTCACCGCCATCGCCACCACCAGTGA GCTCACAGGATCGGCGTCACTGCCATCGCCACCACCAGTGA Direct Loss 0.970638863765524 0 0.12227112 0.049690068 prediction 0.941277727531048 Functional Loss - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9536293 chr17:9536293 synonymous SNV . 0 21 hm5C_associated_SNPs_47526 0 0 0 0 2 CFAP52 chr17:9536205 3'AG 9536205 Downstream 89bp
chr17 9536293 9536293 1 + C T rs187332485 9536293 + 9536273 9536313 41 GCTCACAGGATCGGCGTCACCGCCATCGCCACCACCAGTGA GCTCACAGGATCGGCGTCACTGCCATCGCCACCACCAGTGA Direct Loss 0.970638863765524 0 0.12227112 0.049690068 prediction 0.941277727531048 Functional Loss - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9536293 chr17:9536293 synonymous SNV . 0 21 hm5C_associated_SNPs_47526 0 0 0 0 2 CFAP52 chr17:9536350 5'GT 9536350 Upstream 58bp
chr16 68328627 68328627 1 + C T CESC 68328627 + 68328607 68328647 41 GGTTGTTCTTCGTGGGCTCCCGGGAGGGCCACCTACCGGAC GGTTGTTCTTCGTGGGCTCCTGGGAGGGCCACCTACCGGAC Direct Loss 0.970631125091982 0 0.9503205 0.94676685 prediction 0.941262250183964 Functional Loss - SLC7A6 ENSG00000103064 CDS Human protein_coding chr16:68328627 chr16:68328627 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_47528 0 0 1 0 2 SLC7A6 chr16:68328608 3'AG 68328608 Downstream 20bp
chr16 68328627 68328627 1 + C T CESC 68328627 + 68328607 68328647 41 GGTTGTTCTTCGTGGGCTCCCGGGAGGGCCACCTACCGGAC GGTTGTTCTTCGTGGGCTCCTGGGAGGGCCACCTACCGGAC Direct Loss 0.970631125091982 0 0.9503205 0.94676685 prediction 0.941262250183964 Functional Loss - SLC7A6 ENSG00000103064 CDS Human protein_coding chr16:68328627 chr16:68328627 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_47528 0 0 1 0 2 SLC7A6 chr16:68328704 5'GT 68328704 Upstream 78bp
chr12 107168503 107168503 1 - G C rs368458606 107168503 - 107168483 107168523 41 GGCCGCAGGTGCGGGGGAGCCGCGGCCGCTCTGCGCGCCCA GGCCGCAGGTGCGGGGGAGCGGCGGCCGCTCTGCGCGCCCA Direct Loss 0.970623960904588 0 0.91854024 0.91355306 prediction 0.941247921809175 Functional Loss - LOC100287944 ENSG00000111785;ENSG00000257545 CDS Human other chr12:107168503 chr12:107168503 synonymous SNV . 0 21 hm5C_associated_SNPs_47530 0 0 0 0 1 LOC100287944 chr12:107168468 5'GT 107168468 Upstream 36bp
chr19 45563845 45563845 1 + C T UCEC 45563845 + 45563825 45563865 41 GACGCCAGCGGAGAGAGTTTCGGGAGAAGCGGCTGAGGGGT GACGCCAGCGGAGAGAGTTTTGGGAGAAGCGGCTGAGGGGT Direct Loss 0.970521338241946 0 0.9603206 0.9411598 prediction 0.941042676483892 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45563845 chr19:45563845 nonsynonymous SNV 0.993 3 21 hm5C_associated_SNPs_47533 0 0 1 0 2 CLASRP chr19:45563812 3'AG 45563812 Downstream 34bp
chr19 45563845 45563845 1 + C T UCEC 45563845 + 45563825 45563865 41 GACGCCAGCGGAGAGAGTTTCGGGAGAAGCGGCTGAGGGGT GACGCCAGCGGAGAGAGTTTTGGGAGAAGCGGCTGAGGGGT Direct Loss 0.970521338241946 0 0.9603206 0.9411598 prediction 0.941042676483892 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45563845 chr19:45563845 nonsynonymous SNV 0.993 3 21 hm5C_associated_SNPs_47533 0 0 1 0 2 CLASRP chr19:45563885 5'GT 45563885 Upstream 41bp
chr16 50583388 50583388 1 + C T KIRC 50583388 + 50583368 50583408 41 AAGGGCATCGAGGAGTGGATCGGGAGACAGCGCTGCCCGGG AAGGGCATCGAGGAGTGGATTGGGAGACAGCGCTGCCCGGG Direct Loss 0.970513800130353 0 0.9401869 0.9124746 prediction 0.941027600260707 Functional Loss - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50583388 chr16:50583388 synonymous SNV . 0 21 hm5C_associated_SNPs_47534 0 0 1 0 2 NKD1 chr16:50583333 3'AG 50583333 Downstream 56bp
chr16 50583388 50583388 1 + C T KIRC 50583388 + 50583368 50583408 41 AAGGGCATCGAGGAGTGGATCGGGAGACAGCGCTGCCCGGG AAGGGCATCGAGGAGTGGATTGGGAGACAGCGCTGCCCGGG Direct Loss 0.970513800130353 0 0.9401869 0.9124746 prediction 0.941027600260707 Functional Loss - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50583388 chr16:50583388 synonymous SNV . 0 21 hm5C_associated_SNPs_47534 0 0 1 0 2 NKD1 chr16:50583466 5'GT 50583466 Upstream 79bp
chrX 153674213 153674213 1 + C T UCEC 153674213 + 153674193 153674233 41 AGGAGGCTCTGGTGAAGGAGCGGGAGAAGCAGCTGGCCAAG AGGAGGCTCTGGTGAAGGAGTGGGAGAAGCAGCTGGCCAAG Direct Loss 0.97049016622576 0 0.9069275 0.7962465 prediction 0.94098033245152 Functional Loss - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153674213 chrX:153674213 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_47536 0 0 1 0 2 FAM50A chrX:153674160 3'AG 153674160 Downstream 54bp
chrX 153674213 153674213 1 + C T UCEC 153674213 + 153674193 153674233 41 AGGAGGCTCTGGTGAAGGAGCGGGAGAAGCAGCTGGCCAAG AGGAGGCTCTGGTGAAGGAGTGGGAGAAGCAGCTGGCCAAG Direct Loss 0.97049016622576 0 0.9069275 0.7962465 prediction 0.94098033245152 Functional Loss - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153674213 chrX:153674213 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_47536 0 0 1 0 2 FAM50A chrX:153674259 5'GT 153674259 Upstream 47bp
chr1 22970642 22970642 1 + C T rs15940 22970642 + 22970622 22970662 41 CCAGGGATGCCCGGCCTGCCCGGGGCACCAGGGAAGGATGG CCAGGGATGCCCGGCCTGCCTGGGGCACCAGGGAAGGATGG Direct Loss 0.970443876644383 0 0.91175693 0.8703791 prediction 0.940887753288767 Functional Loss - C1QC ENSG00000159189 CDS Human protein_coding chr1:22970642 chr1:22970642 synonymous SNV . 0 21 hm5C_associated_SNPs_47542 0 0 0 0 1 C1QC chr1:22970697 5'GT 22970697 Upstream 56bp
chr10 82331305 82331305 1 + C T SKCM 82331305 + 82331285 82331325 41 ACCGCAAGGCTGCCAAAGTCCTGGAGGAACGCATCCACGAG ACCGCAAGGCTGCCAAAGTCTTGGAGGAACGCATCCACGAG Direct Loss 0.9703667497936 0 0.30961114 0.35838905 prediction 0.940733499587201 Functional Loss - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82331305 chr10:82331305 synonymous SNV . 0 21 hm5C_associated_SNPs_47547 0 0 0 0 1 SH2D4B chr10:82331334 5'GT 82331334 Upstream 30bp
chr8 57358431 57358431 1 - G A LUAD 57358431 - 57358411 57358451 41 CCGTGCGGGCCGAATGCAGCCAGGATTGCGCGACGTGCAGC CCGTGCGGGCCGAATGCAGCTAGGATTGCGCGACGTGCAGC Direct Loss 0.970360369907086 0 0.88641644 0.32572246 prediction 0.940720739814172 Functional Loss - PENK ENSG00000181195 CDS Human protein_coding chr8:57358431 chr8:57358431 stopgain 0.983 1 21 hm5C_associated_SNPs_47548 0 0 0 0 2 PENK chr8:57358375 5'GT 57358375 Upstream 57bp
chr8 57358431 57358431 1 - G A LUAD 57358431 - 57358411 57358451 41 CCGTGCGGGCCGAATGCAGCCAGGATTGCGCGACGTGCAGC CCGTGCGGGCCGAATGCAGCTAGGATTGCGCGACGTGCAGC Direct Loss 0.970360369907086 0 0.88641644 0.32572246 prediction 0.940720739814172 Functional Loss - PENK ENSG00000181195 CDS Human antisense chr8:57358431 chr8:57358431 stopgain 0.983 1 21 hm5C_associated_SNPs_47548 0 0 0 0 2 LOC101929415 chr8:57358515 3'AG 57358515 Downstream 85bp
chr16 31139397 31139397 1 + C T LUSC 31139397 + 31139377 31139417 41 TGCCAGTGGCGGCAGCCCCCCGGGAAAGAGATCTACCGCAA TGCCAGTGGCGGCAGCCCCCTGGGAAAGAGATCTACCGCAA Direct Loss 0.970309295314741 0 0.8535193 0.44561803 prediction 0.940618590629482 Functional Loss - KAT8 ENSG00000103510 CDS Human protein_coding chr16:31139397 chr16:31139397 synonymous SNV . 0 21 hm5C_associated_SNPs_47553 0 0 1 0 1 KAT8 chr16:31139460 5'GT 31139460 Upstream 64bp
chr5 72794607 72794607 1 + C T CESC 72794607 + 72794587 72794627 41 CTCCACCTCGCGGCGGAACCCGAGGACAGGAGCCTCAGGTA CTCCACCTCGCGGCGGAACCTGAGGACAGGAGCCTCAGGTA Direct Loss 0.97030106078264 0 0.91641665 0.8796032 prediction 0.940602121565279 Functional Loss - BTF3 ENSG00000145741 CDS Human protein_coding chr5:72794607 chr5:72794607 stopgain 0.999 0 21 hm5C_associated_SNPs_47554 0 0 0 0 1 BTF3 chr5:72794624 5'GT 72794624 Upstream 18bp
chr9 132565593 132565593 1 + C T CESC 132565593 + 132565573 132565613 41 ATCACCGTGGGCCTAGCCATCGGGGCCGCGTCGGCCATCAC ATCACCGTGGGCCTAGCCATTGGGGCCGCGTCGGCCATCAC Direct Loss 0.970293021095289 0 0.94967747 0.9225637 prediction 0.940586042190579 Functional Loss - TOR1B ENSG00000136816 CDS Human protein_coding chr9:132565593 chr9:132565593 synonymous SNV . 0 21 hm5C_associated_SNPs_47557 0 0 1 0 1 TOR1B chr9:132565690 5'GT 132565690 Upstream 98bp
chr7 134613548 134613548 1 + C T UCEC 134613548 + 134613528 134613568 41 ATGATGAAGAGGAGGCAGCCCGGGAACGGCGCCGCCGAGCC ATGATGAAGAGGAGGCAGCCTGGGAACGGCGCCGCCGAGCC Direct Loss 0.970262252724573 0 0.8617248 0.67095274 prediction 0.940524505449146 Functional Loss - CALD1 ENSG00000122786 CDS Human protein_coding chr7:134613548 chr7:134613548 nonsynonymous SNV 0.992 4 21 hm5C_associated_SNPs_47559 0 0 1 0 1 CALD1 chr7:134613628 5'GT 134613628 Upstream 81bp
chr9 101602409 101602409 1 + C T UCEC 101602409 + 101602389 101602429 41 GAGGACAGGCCTGGCTTCTTCGGGATGGTGAGTGAGGGTGG GAGGACAGGCCTGGCTTCTTTGGGATGGTGAGTGAGGGTGG Direct Loss 0.970231121570914 0 0.8700966 0.7961984 prediction 0.940462243141829 Functional Loss - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101602409 chr9:101602409 synonymous SNV . 0 21 hm5C_associated_SNPs_47560 0 0 1 0 1 GALNT12 chr9:101602415 5'GT 101602415 Upstream 7bp
chr3 10219626 10219626 1 + C T UCEC 10219626 + 10219606 10219646 41 TGCTGTGGTGGTGGGGCATGCGGCAGGCCACCGTCCAGCAA TGCTGTGGTGGTGGGGCATGTGGCAGGCCACCGTCCAGCAA Direct Loss 0.970220388246081 0 0.8998384 0.86090434 prediction 0.940440776492162 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10219626 chr3:10219626 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_47561 0 0 1 0 1 IRAK2 chr3:10219704 5'GT 10219704 Upstream 79bp
chr1 16378708 16378708 1 + C T HNSC 16378708 + 16378688 16378728 41 TGCAGGGGCTGCAGCCTTCTCAGGGGCTGTGACCCACACCA TGCAGGGGCTGCAGCCTTCTTAGGGGCTGTGACCCACACCA Direct Loss 0.970201085391803 0 0.9664159 0.9475388 prediction 0.940402170783606 Functional Loss - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16378708 chr1:16378708 nonsynonymous SNV 0.990 5 21 hm5C_associated_SNPs_47562 0 0 0 0 1 CLCNKB chr1:16378693 3'AG 16378693 Downstream 16bp
chr16 55703563 55703563 1 + C T READ 55703563 + 55703543 55703583 41 TGGCTCTGGGACAGTACAACCGGGAGGGGGCTGCCACCGTT TGGCTCTGGGACAGTACAACTGGGAGGGGGCTGCCACCGTT Direct Loss 0.970193050040009 0 0.9087085 0.78705233 prediction 0.940386100080018 Functional Loss - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55703563 chr16:55703563 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_47564 0 0 0 0 2 SLC6A2 chr16:55703477 3'AG 55703477 Downstream 87bp
chr16 55703563 55703563 1 + C T READ 55703563 + 55703543 55703583 41 TGGCTCTGGGACAGTACAACCGGGAGGGGGCTGCCACCGTT TGGCTCTGGGACAGTACAACTGGGAGGGGGCTGCCACCGTT Direct Loss 0.970193050040009 0 0.9087085 0.78705233 prediction 0.940386100080018 Functional Loss - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55703563 chr16:55703563 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_47564 0 0 0 0 2 SLC6A2 chr16:55703608 5'GT 55703608 Upstream 46bp
chr12 118577301 118577301 1 + C A HNSC 118577301 + 118577281 118577321 41 AACATGAAGGGCAATGACATCAGCAGTGGCACAGTCCTCTC AACATGAAGGGCAATGACATAAGCAGTGGCACAGTCCTCTC Direct Loss 0.970170445050231 0 0.43033987 0.27360988 prediction 0.940340890100463 Functional Loss - PEBP1 ENSG00000089220 CDS Human protein_coding chr12:118577301 chr12:118577301 synonymous SNV . 0 21 hm5C_associated_SNPs_47565 0 0 1 0 2 PEBP1 chr12:118577256 3'AG 118577256 Downstream 46bp
chr12 118577301 118577301 1 + C A HNSC 118577301 + 118577281 118577321 41 AACATGAAGGGCAATGACATCAGCAGTGGCACAGTCCTCTC AACATGAAGGGCAATGACATAAGCAGTGGCACAGTCCTCTC Direct Loss 0.970170445050231 0 0.43033987 0.27360988 prediction 0.940340890100463 Functional Loss - PEBP1 ENSG00000089220 CDS Human protein_coding chr12:118577301 chr12:118577301 synonymous SNV . 0 21 hm5C_associated_SNPs_47565 0 0 1 0 2 PEBP1 chr12:118577356 5'GT 118577356 Upstream 56bp
chr14 100402444 100402444 1 + C T UCEC 100402444 + 100402424 100402464 41 TGACAACGGGAGGAAGTACACGCGAGTGGGCAAGTGCTCGG TGACAACGGGAGGAAGTACATGCGAGTGGGCAAGTGCTCGG Direct Loss 0.970148036510959 0 0.6682222 0.5711605 prediction 0.940296073021917 Functional Loss - EML1 ENSG00000066629 CDS Human protein_coding chr14:100402444 chr14:100402444 nonsynonymous SNV 0.013 1 21 hm5C_associated_SNPs_47566 0 0 0 0 2 EML1 chr14:100402366 3'AG 100402366 Downstream 79bp
chr14 100402444 100402444 1 + C T UCEC 100402444 + 100402424 100402464 41 TGACAACGGGAGGAAGTACACGCGAGTGGGCAAGTGCTCGG TGACAACGGGAGGAAGTACATGCGAGTGGGCAAGTGCTCGG Direct Loss 0.970148036510959 0 0.6682222 0.5711605 prediction 0.940296073021917 Functional Loss - EML1 ENSG00000066629 CDS Human protein_coding chr14:100402444 chr14:100402444 nonsynonymous SNV 0.013 1 21 hm5C_associated_SNPs_47566 0 0 0 0 2 EML1 chr14:100402463 5'GT 100402463 Upstream 20bp
chr1 153633723 153633723 1 + C T UCEC 153633723 + 153633703 153633743 41 GTTGCCAAGGAAACAGCCCGCAGGAGAGCAATGCTGGATTC GTTGCCAAGGAAACAGCCCGTAGGAGAGCAATGCTGGATTC Direct Loss 0.970096598347583 0 0.8784754 0.5844928 prediction 0.940193196695166 Functional Loss - SNAPIN ENSG00000143553 CDS Human protein_coding chr1:153633723 chr1:153633723 synonymous SNV . 0 21 hm5C_associated_SNPs_47567 0 0 1 0 1 SNAPIN chr1:153633676 3'AG 153633676 Downstream 48bp
chr15 75185571 75185571 1 + C T BLCA 75185571 + 75185551 75185591 41 CCCAGGCTGTGGCCTCCTCTCTGCAGAGCTGTTTCTCCCAC CCCAGGCTGTGGCCTCCTCTTTGCAGAGCTGTTTCTCCCAC Direct Loss 0.970079068449433 0 0.22425348 0.13891032 prediction 0.940158136898867 Functional Loss - MPI ENSG00000178802 CDS Human protein_coding chr15:75185571 chr15:75185571 synonymous SNV . 0 21 hm5C_associated_SNPs_47568 0 0 1 0 2 MPI chr15:75185479 3'AG 75185479 Downstream 93bp
chr15 75185571 75185571 1 + C T BLCA 75185571 + 75185551 75185591 41 CCCAGGCTGTGGCCTCCTCTCTGCAGAGCTGTTTCTCCCAC CCCAGGCTGTGGCCTCCTCTTTGCAGAGCTGTTTCTCCCAC Direct Loss 0.970079068449433 0 0.22425348 0.13891032 prediction 0.940158136898867 Functional Loss - MPI ENSG00000178802 CDS Human protein_coding chr15:75185571 chr15:75185571 synonymous SNV . 0 21 hm5C_associated_SNPs_47568 0 0 1 0 2 MPI chr15:75185661 5'GT 75185661 Upstream 91bp
chr2 119739064 119739064 1 + C T SKCM 119739064 + 119739044 119739084 41 CAGGGGAGTAAAGGTGACTTCGGGAGGCCAGGCCCACCAGG CAGGGGAGTAAAGGTGACTTTGGGAGGCCAGGCCCACCAGG Direct Loss 0.970041157477435 0 0.9533216 0.9398457 prediction 0.94008231495487 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119739064 chr2:119739064 synonymous SNV . 0 21 hm5C_associated_SNPs_47571 0 0 0 0 2 MARCO chr2:119738985 3'AG 119738985 Downstream 80bp
chr2 119739064 119739064 1 + C T SKCM 119739064 + 119739044 119739084 41 CAGGGGAGTAAAGGTGACTTCGGGAGGCCAGGCCCACCAGG CAGGGGAGTAAAGGTGACTTTGGGAGGCCAGGCCCACCAGG Direct Loss 0.970041157477435 0 0.9533216 0.9398457 prediction 0.94008231495487 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119739064 chr2:119739064 synonymous SNV . 0 21 hm5C_associated_SNPs_47571 0 0 0 0 2 MARCO chr2:119739083 5'GT 119739083 Upstream 20bp
chr12 6554653 6554653 1 + C T UCEC 6554653 + 6554633 6554673 41 TCAGTGTGATCCTTGCATACCGGGGGTCTCCTTCTCTCCTG TCAGTGTGATCCTTGCATACTGGGGGTCTCCTTCTCTCCTG Direct Loss 0.970013461503128 0 0.93322194 0.9000554 prediction 0.940026923006256 Functional Loss - CD27 ENSG00000139193 CDS Human protein_coding chr12:6554653 chr12:6554653 nonsynonymous SNV 0.006 1 21 hm5C_associated_SNPs_47574 0 0 0 0 2 CD27 chr12:6554590 3'AG 6554590 Downstream 64bp
chr12 6554653 6554653 1 + C T UCEC 6554653 + 6554633 6554673 41 TCAGTGTGATCCTTGCATACCGGGGGTCTCCTTCTCTCCTG TCAGTGTGATCCTTGCATACTGGGGGTCTCCTTCTCTCCTG Direct Loss 0.970013461503128 0 0.93322194 0.9000554 prediction 0.940026923006256 Functional Loss - CD27 ENSG00000139193 CDS Human protein_coding chr12:6554653 chr12:6554653 nonsynonymous SNV 0.006 1 21 hm5C_associated_SNPs_47574 0 0 0 0 2 CD27 chr12:6554721 5'GT 6554721 Upstream 69bp
chr3 119445030 119445030 1 + C T LUAD 119445030 + 119445010 119445050 41 TCCTGCAGGTCGGGGTCTCCCAGCAGGACAAGCTGAGGTGG TCCTGCAGGTCGGGGTCTCCTAGCAGGACAAGCTGAGGTGG Direct Loss 0.970005150145327 0 0.7232758 0.39269924 prediction 0.940010300290655 Functional Loss - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119445030 chr3:119445030 nonsynonymous SNV 0.946 4 21 hm5C_associated_SNPs_47575 0 0 0 0 1 MAATS1 chr3:119445018 3'AG 119445018 Downstream 13bp
chr19 55106616 55106616 1 + C T rs138781448 55106616 + 55106596 55106636 41 ACCCAGCCCTGTGGTGACCTCAGGAGGGAACGTGACCCTCC ACCCAGCCCTGTGGTGACCTTAGGAGGGAACGTGACCCTCC Direct Loss 0.969995049209458 0 0.94612455 0.9357523 prediction 0.939990098418916 Functional Loss - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55106616 chr19:55106616 nonsynonymous SNV 0.016 0 21 hm5C_associated_SNPs_47577 0 0 0 0 1 LILRA1 chr19:55106565 3'AG 55106565 Downstream 52bp
chr13 114469185 114469185 1 + C T UCEC 114469185 + 114469165 114469205 41 GTCGGGCTGGCTGCCACCACCAGGACGGAGAATGTGACCGT GTCGGGCTGGCTGCCACCACTAGGACGGAGAATGTGACCGT Direct Loss 0.969991763427034 0 0.9234885 0.90504354 prediction 0.939983526854067 Functional Loss - TMEM255B ENSG00000184497 CDS Human protein_coding chr13:114469185 chr13:114469185 synonymous SNV . 0 21 hm5C_associated_SNPs_47579 0 0 0 0 2 TMEM255B chr13:114469088 3'AG 114469088 Downstream 98bp
chr13 114469185 114469185 1 + C T UCEC 114469185 + 114469165 114469205 41 GTCGGGCTGGCTGCCACCACCAGGACGGAGAATGTGACCGT GTCGGGCTGGCTGCCACCACTAGGACGGAGAATGTGACCGT Direct Loss 0.969991763427034 0 0.9234885 0.90504354 prediction 0.939983526854067 Functional Loss - TMEM255B ENSG00000184497 CDS Human protein_coding chr13:114469185 chr13:114469185 synonymous SNV . 0 21 hm5C_associated_SNPs_47579 0 0 0 0 2 TMEM255B chr13:114469230 5'GT 114469230 Upstream 46bp
chr7 100803860 100803860 1 + C T rs372487377 100803860 + 100803840 100803880 41 TGGCATAGCCCCTGCTGGGCCGGGGTGTGGCGATGGGGTCC TGGCATAGCCCCTGCTGGGCTGGGGTGTGGCGATGGGGTCC Direct Loss 0.969964245063261 0 0.85479903 0.6947076 prediction 0.939928490126521 Functional Loss - AP1S1 ENSG00000106367 UTR3 Human protein_coding chr7:100803860 chr7:100803860 . . 0 21 hm5C_associated_SNPs_47580 0 0 1 0 1 AP1S1 chr7:100803800 3'AG 100803800 Downstream 61bp
chr4 56290754 56290754 1 + C T COAD 56290754 + 56290734 56290774 41 TGTGGGGCACTGCCTGTGCACGGGATTGGCAGTAATTGGAG TGTGGGGCACTGCCTGTGCATGGGATTGGCAGTAATTGGAG Direct Loss 0.969955928317845 0 0.8452783 0.5739561 prediction 0.93991185663569 Functional Loss - TMEM165 ENSG00000134851 CDS Human protein_coding chr4:56290754 chr4:56290754 nonsynonymous SNV 0.386 5 21 hm5C_associated_SNPs_47581 0 0 1 0 2 TMEM165 chr4:56290705 3'AG 56290705 Downstream 50bp
chr4 56290754 56290754 1 + C T COAD 56290754 + 56290734 56290774 41 TGTGGGGCACTGCCTGTGCACGGGATTGGCAGTAATTGGAG TGTGGGGCACTGCCTGTGCATGGGATTGGCAGTAATTGGAG Direct Loss 0.969955928317845 0 0.8452783 0.5739561 prediction 0.93991185663569 Functional Loss - TMEM165 ENSG00000134851 CDS Human protein_coding chr4:56290754 chr4:56290754 nonsynonymous SNV 0.386 5 21 hm5C_associated_SNPs_47581 0 0 1 0 2 TMEM165 chr4:56290810 5'GT 56290810 Upstream 57bp
chr13 114290941 114290941 1 + C T UCEC 114290941 + 114290921 114290961 41 CATGGCTTGCGGGCTGGAGTCGGGGAGCTGCTCTGCCGAAG CATGGCTTGCGGGCTGGAGTTGGGGAGCTGCTCTGCCGAAG Direct Loss 0.96993916384082 0 0.93483436 0.8948966 prediction 0.93987832768164 Functional Loss - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114290941 chr13:114290941 nonsynonymous SNV 0.222 3 21 hm5C_associated_SNPs_47584 0 0 1 0 2 TFDP1 chr13:114290849 3'AG 114290849 Downstream 93bp
chr13 114290941 114290941 1 + C T UCEC 114290941 + 114290921 114290961 41 CATGGCTTGCGGGCTGGAGTCGGGGAGCTGCTCTGCCGAAG CATGGCTTGCGGGCTGGAGTTGGGGAGCTGCTCTGCCGAAG Direct Loss 0.96993916384082 0 0.93483436 0.8948966 prediction 0.93987832768164 Functional Loss - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114290941 chr13:114290941 nonsynonymous SNV 0.222 3 21 hm5C_associated_SNPs_47584 0 0 1 0 2 TFDP1 chr13:114291015 5'GT 114291015 Upstream 75bp
chr6 3017194 3017194 1 + C T UCEC 3017194 + 3017174 3017214 41 GACAGGAGTCAATGGAGATTCTCGATACTTCCTGTGGCCAC GACAGGAGTCAATGGAGATTTTCGATACTTCCTGTGGCCAC Direct Loss 0.969855149497673 0 0.91008085 0.73015314 prediction 0.939710298995346 Functional Loss - NQO2 ENSG00000124588 CDS Human protein_coding chr6:3017194 chr6:3017194 nonsynonymous SNV 0.374 0 21 hm5C_associated_SNPs_47590 0 0 1 0 1 NQO2 chr6:3017219 5'GT 3017219 Upstream 26bp
chr5 148725156 148725156 1 + C A UCEC 148725156 + 148725136 148725176 41 CGGGTGCAGCGCCTACTGGCCTGGAGTGCCGCGTGGGAGAG CGGGTGCAGCGCCTACTGGCATGGAGTGCCGCGTGGGAGAG Direct Loss 0.969823562748665 0 0.2529443 0.41233587 prediction 0.93964712549733 Functional Loss - GRPEL2 ENSG00000164284 CDS Human protein_coding chr5:148725156 chr5:148725156 synonymous SNV . 0 21 hm5C_associated_SNPs_47592 0 0 1 0 1 GRPEL2 chr5:148725179 5'GT 148725179 Upstream 24bp
chr16 77822729 77822729 1 + C T COAD 77822729 + 77822709 77822749 41 GCGGTGGTGCTGGCTGGCTTCGGGGGGCTCAACAAGCTGCG GCGGTGGTGCTGGCTGGCTTTGGGGGGCTCAACAAGCTGCG Direct Loss 0.969689369901816 0 0.93307483 0.9164601 prediction 0.939378739803633 Functional Loss - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77822729 chr16:77822729 synonymous SNV . 0 21 hm5C_associated_SNPs_47600 0 0 0 0 1 VAT1L chr16:77822812 5'GT 77822812 Upstream 84bp
chr5 74065137 74065137 1 + C T BLCA 74065137 + 74065117 74065157 41 GCTGGACAGAGAGGGACAATCTCGAGCTAAAGTACTTTCCA GCTGGACAGAGAGGGACAATTTCGAGCTAAAGTACTTTCCA Direct Loss 0.969676902495501 0 0.7351163 0.6770568 prediction 0.939353804991003 Functional Loss - NSA2 ENSG00000164346 CDS Human protein_coding chr5:74065137 chr5:74065137 nonsynonymous SNV 0.851 1 21 hm5C_associated_SNPs_47601 0 0 1 0 2 NSA2 chr5:74065039 3'AG 74065039 Downstream 99bp
chr5 74065137 74065137 1 + C T BLCA 74065137 + 74065117 74065157 41 GCTGGACAGAGAGGGACAATCTCGAGCTAAAGTACTTTCCA GCTGGACAGAGAGGGACAATTTCGAGCTAAAGTACTTTCCA Direct Loss 0.969676902495501 0 0.7351163 0.6770568 prediction 0.939353804991003 Functional Loss - NSA2 ENSG00000164346 CDS Human protein_coding chr5:74065137 chr5:74065137 nonsynonymous SNV 0.851 1 21 hm5C_associated_SNPs_47601 0 0 1 0 2 NSA2 chr5:74065189 5'GT 74065189 Upstream 53bp
chr5 76326729 76326729 1 + C T BLCA 76326729 + 76326709 76326749 41 AAGCGGCAGGTGCGGGAGATCGAGAAGCTGCTGCATCACAC AAGCGGCAGGTGCGGGAGATTGAGAAGCTGCTGCATCACAC Direct Loss 0.969616698408893 0 0.9096962 0.8979119 prediction 0.939233396817785 Functional Loss - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76326729 chr5:76326729 synonymous SNV . 0 21 hm5C_associated_SNPs_47605 0 0 0 0 1 AGGF1 chr5:76326801 5'GT 76326801 Upstream 73bp
chr19 808629 808629 1 + C T STAD 808629 + 808609 808649 41 ACCAGAACGTGCAGCTGCCCCGCGAGGGCCAGGAGGACCAG ACCAGAACGTGCAGCTGCCCTGCGAGGGCCAGGAGGACCAG Direct Loss 0.969594591383018 0 0.50358313 0.5613991 prediction 0.939189182766036 Functional Loss - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:808629 chr19:808629 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_47608 0 0 1 0 1 PTBP1 chr19:808546 3'AG 808546 Downstream 84bp
chr19 57883207 57883207 1 + C G LUSC 57883207 + 57883187 57883227 41 CCCAGGAGGAGTGGGGGCATCTCGATGAGGCTCAGAGATTG CCCAGGAGGAGTGGGGGCATGTCGATGAGGCTCAGAGATTG Direct Loss 0.969551457085359 0 0.9104708 0.31724995 prediction 0.939102914170719 Functional Loss - ZNF547 ENSG00000152433;ENSG00000268133 CDS Human other chr19:57883207 chr19:57883207 nonsynonymous SNV 0.970 3 21 hm5C_associated_SNPs_47610 0 0 0 0 1 ZNF547 chr19:57883276 5'GT 57883276 Upstream 70bp
chr20 4705236 4705236 1 + C G LUAD 4705236 + 4705216 4705256 41 TGGTGGTGGCTGGCCACTGTCTGCATGCTGCTCTTCAGCCA TGGTGGTGGCTGGCCACTGTGTGCATGCTGCTCTTCAGCCA Direct Loss 0.969550489440135 0 0.34567872 0.25313985 prediction 0.93910097888027 Functional Loss - PRND ENSG00000171864 CDS Human protein_coding chr20:4705236 chr20:4705236 synonymous SNV . 0 21 hm5C_associated_SNPs_47611 0 0 0 0 1 PRND chr20:4705187 3'AG 4705187 Downstream 50bp
chr18 909477 909477 1 + C T HNSC 909477 + 909457 909497 41 GGCGGCGGCGCGGGGGACGACGCGGAGCCGCTCTCCAAGCG GGCGGCGGCGCGGGGGACGATGCGGAGCCGCTCTCCAAGCG Direct Loss 0.969549490228681 0 0.91723084 0.8772248 prediction 0.939098980457361 Functional Loss - ADCYAP1 ENSG00000141433 CDS Human protein_coding chr18:909477 chr18:909477 synonymous SNV . 0 21 hm5C_associated_SNPs_47612 0 0 0 0 1 ADCYAP1 chr18:909447 3'AG 909447 Downstream 31bp
chr3 197687151 197687151 1 + C T BLCA 197687151 + 197687131 197687171 41 GGGCGGAGGAGTGGGTTACTCGGGCTCAGGCCCGGGCCGGA GGGCGGAGGAGTGGGTTACTTGGGCTCAGGCCCGGGCCGGA Direct Loss 0.969536261105219 0 0.90362114 0.8651502 prediction 0.939072522210437 Functional Loss - LMLN ENSG00000185621 CDS Human protein_coding chr3:197687151 chr3:197687151 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47613 0 0 0 0 1 LMLN chr3:197687190 5'GT 197687190 Upstream 40bp
chr16 723543 723543 1 + C T BLCA 723543 + 723523 723563 41 CGGGGGCTGCTGGGGGTTGTCGGGGCCGCCGTGGCCGCAGT CGGGGGCTGCTGGGGGTTGTTGGGGCCGCCGTGGCCGCAGT Direct Loss 0.969531157430176 0 0.9539249 0.9307267 prediction 0.939062314860351 Functional Loss - RHOT2 ENSG00000140983 CDS Human protein_coding chr16:723543 chr16:723543 synonymous SNV . 0 21 hm5C_associated_SNPs_47614 0 0 1 0 1 RHOT2 chr16:723480 3'AG 723480 Downstream 64bp
chr18 29054174 29054174 1 + C A LUAD 29054174 + 29054154 29054194 41 GCTTGGAGCAGCCACTGAATCTGGAGGTGCTGCAGGCTTTG GCTTGGAGCAGCCACTGAATATGGAGGTGCTGCAGGCTTTG Direct Loss 0.969499892967056 0 0.68528575 0.38334724 prediction 0.938999785934111 Functional Loss - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29054174 chr18:29054174 nonsynonymous SNV 0.006 0 21 hm5C_associated_SNPs_47617 0 0 0 0 1 DSG3 chr18:29054084 3'AG 29054084 Downstream 91bp
chr10 79814382 79814382 1 + C T rs375150364 79814382 + 79814362 79814402 41 ACTCGAAGGCAAGAGAAAGCCGGGGGGTTGTGTGGCAGGTA ACTCGAAGGCAAGAGAAAGCTGGGGGGTTGTGTGGCAGGTA Direct Loss 0.969443378632279 0 0.90019906 0.8877845 prediction 0.938886757264558 Functional Loss - RPS24 ENSG00000138326 CDS Human protein_coding chr10:79814382 chr10:79814382 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_47620 0 0 0 0 1 RPS24 chr10:79814289 3'AG 79814289 Downstream 94bp
chr15 91489871 91489871 1 + C T rs200344405 91489871 + 91489851 91489891 41 TTTGAGGGCCAAGGGCTGGCCGGGAAGCTACGGGCCATCCA TTTGAGGGCCAAGGGCTGGCTGGGAAGCTACGGGCCATCCA Direct Loss 0.969434281347957 0 0.93053067 0.9101106 prediction 0.938868562695914 Functional Loss - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91489871 chr15:91489871 synonymous SNV . 0 21 hm5C_associated_SNPs_47621 0 0 1 0 1 UNC45A chr15:91489844 3'AG 91489844 Downstream 28bp
chr12 3121375 3121375 1 + C T SKCM 3121375 + 3121355 3121395 41 TGCTGGCTCGTCGCAAAGCTCGCGAGATCCAGGCCAAGCTA TGCTGGCTCGTCGCAAAGCTTGCGAGATCCAGGCCAAGCTA Direct Loss 0.969426650975704 0 0.90746886 0.29467782 prediction 0.938853301951407 Functional Loss - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3121375 chr12:3121375 nonsynonymous SNV 0.994 4 21 hm5C_associated_SNPs_47622 0 0 1 0 2 TEAD4 chr12:3121336 3'AG 3121336 Downstream 40bp
chr12 3121375 3121375 1 + C T SKCM 3121375 + 3121355 3121395 41 TGCTGGCTCGTCGCAAAGCTCGCGAGATCCAGGCCAAGCTA TGCTGGCTCGTCGCAAAGCTTGCGAGATCCAGGCCAAGCTA Direct Loss 0.969426650975704 0 0.90746886 0.29467782 prediction 0.938853301951407 Functional Loss - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3121375 chr12:3121375 nonsynonymous SNV 0.994 4 21 hm5C_associated_SNPs_47622 0 0 1 0 2 TEAD4 chr12:3121398 5'GT 3121398 Upstream 24bp
chr20 10279979 10279979 1 + C T UCEC 10279979 + 10279959 10279999 41 GAGCAGGTGAGCGGCATCATCGGGAACCTCCGTCACATGGC GAGCAGGTGAGCGGCATCATTGGGAACCTCCGTCACATGGC Direct Loss 0.96940677393666 0 0.9308528 0.8694657 prediction 0.93881354787332 Functional Loss - SNAP25 ENSG00000132639 CDS Human protein_coding chr20:10279979 chr20:10279979 synonymous SNV . 0 21 hm5C_associated_SNPs_47623 0 0 0 0 1 SNAP25 chr20:10280060 5'GT 10280060 Upstream 82bp
chr20 57597926 57597926 1 + C T rs35505670 57597926 + 57597906 57597946 41 GAGATGATTGGTGAGGAACACGGGATCGACTTGGCTGGGAG GAGATGATTGGTGAGGAACATGGGATCGACTTGGCTGGGAG Direct Loss 0.969403587625194 0 0.90122294 0.8828658 prediction 0.938807175250387 Functional Loss - TUBB1 ENSG00000101162 CDS Human protein_coding chr20:57597926 chr20:57597926 synonymous SNV . 0 21 hm5C_associated_SNPs_47624 0 0 1 0 2 TUBB1 chr20:57597900 3'AG 57597900 Downstream 27bp
chr20 57597926 57597926 1 + C T rs35505670 57597926 + 57597906 57597946 41 GAGATGATTGGTGAGGAACACGGGATCGACTTGGCTGGGAG GAGATGATTGGTGAGGAACATGGGATCGACTTGGCTGGGAG Direct Loss 0.969403587625194 0 0.90122294 0.8828658 prediction 0.938807175250387 Functional Loss - TUBB1 ENSG00000101162 CDS Human protein_coding chr20:57597926 chr20:57597926 synonymous SNV . 0 21 hm5C_associated_SNPs_47624 0 0 1 0 2 TUBB1 chr20:57598008 5'GT 57598008 Upstream 83bp
chr1 38027169 38027169 1 + C T SKCM 38027169 + 38027149 38027189 41 CATTGGAAGATGAGTTGATCCGGGAGGTCACCATCAACTGT CATTGGAAGATGAGTTGATCTGGGAGGTCACCATCAACTGT Direct Loss 0.969389677385007 0 0.92039204 0.9006069 prediction 0.938779354770013 Functional Loss - DNALI1 ENSG00000163879 CDS Human protein_coding chr1:38027169 chr1:38027169 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_47626 0 0 0 0 1 DNALI1 chr1:38027158 3'AG 38027158 Downstream 12bp
chr16 56921848 56921848 1 + C T rs150692587 56921848 + 56921828 56921868 41 CCCTGGCAGGCCGCAGGTCTCGGGAGAATGAAGCCCAACAT CCCTGGCAGGCCGCAGGTCTTGGGAGAATGAAGCCCAACAT Direct Loss 0.969383065590357 0 0.948397 0.92335224 prediction 0.938766131180714 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56921848 chr16:56921848 synonymous SNV . 0 21 hm5C_associated_SNPs_47628 0 0 0 0 2 SLC12A3 chr16:56921837 3'AG 56921837 Downstream 12bp
chr16 56921848 56921848 1 + C T rs150692587 56921848 + 56921828 56921868 41 CCCTGGCAGGCCGCAGGTCTCGGGAGAATGAAGCCCAACAT CCCTGGCAGGCCGCAGGTCTTGGGAGAATGAAGCCCAACAT Direct Loss 0.969383065590357 0 0.948397 0.92335224 prediction 0.938766131180714 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56921848 chr16:56921848 synonymous SNV . 0 21 hm5C_associated_SNPs_47628 0 0 0 0 2 SLC12A3 chr16:56921943 5'GT 56921943 Upstream 96bp
chr13 31513891 31513891 1 + C T LUAD 31513891 + 31513871 31513911 41 GACTGCATTCACGCCTAAAACAGGAGCAGTGCCTGCCTTAA GACTGCATTCACGCCTAAAATAGGAGCAGTGCCTGCCTTAA Direct Loss 0.969376564341585 0 0.903331 0.8892735 prediction 0.938753128683171 Functional Loss - TEX26 ENSG00000175664 CDS Human protein_coding chr13:31513891 chr13:31513891 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47631 0 0 0 0 2 TEX26 chr13:31513831 3'AG 31513831 Downstream 61bp
chr13 31513891 31513891 1 + C T LUAD 31513891 + 31513871 31513911 41 GACTGCATTCACGCCTAAAACAGGAGCAGTGCCTGCCTTAA GACTGCATTCACGCCTAAAATAGGAGCAGTGCCTGCCTTAA Direct Loss 0.969376564341585 0 0.903331 0.8892735 prediction 0.938753128683171 Functional Loss - TEX26 ENSG00000175664 CDS Human protein_coding chr13:31513891 chr13:31513891 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47631 0 0 0 0 2 TEX26 chr13:31513915 5'GT 31513915 Upstream 25bp
chr1 151015529 151015529 1 + C T UCEC 151015529 + 151015509 151015549 41 ACTGGAGAAGATGGACATCACTGGAGGGTGTTCCGAATGGG ACTGGAGAAGATGGACATCATTGGAGGGTGTTCCGAATGGG Direct Loss 0.969365456713838 0 0.44541085 0.816437 prediction 0.938730913427677 Functional Loss - BNIPL ENSG00000163141 CDS Human protein_coding chr1:151015529 chr1:151015529 synonymous SNV . 0 21 hm5C_associated_SNPs_47632 0 0 0 0 2 BNIPL chr1:151015432 3'AG 151015432 Downstream 98bp
chr1 151015529 151015529 1 + C T UCEC 151015529 + 151015509 151015549 41 ACTGGAGAAGATGGACATCACTGGAGGGTGTTCCGAATGGG ACTGGAGAAGATGGACATCATTGGAGGGTGTTCCGAATGGG Direct Loss 0.969365456713838 0 0.44541085 0.816437 prediction 0.938730913427677 Functional Loss - BNIPL ENSG00000163141 CDS Human protein_coding chr1:151015529 chr1:151015529 synonymous SNV . 0 21 hm5C_associated_SNPs_47632 0 0 0 0 2 BNIPL chr1:151015614 5'GT 151015614 Upstream 86bp
chr19 39898462 39898462 1 + C T CESC 39898462 + 39898442 39898482 41 CAGCCCAGGCTGGGGCTCCTCGGGACCCTGGAGCCTGAGCC CAGCCCAGGCTGGGGCTCCTTGGGACCCTGGAGCCTGAGCC Direct Loss 0.96921919594185 0 0.9081626 0.8448621 prediction 0.938438391883701 Functional Loss - ZFP36 ENSG00000128016 CDS Human other chr19:39898462 chr19:39898462 nonsynonymous SNV 0.039 0 21 hm5C_associated_SNPs_47641 0 0 0 0 1 ZFP36 chr19:39898383 3'AG 39898383 Downstream 80bp
chr11 65338137 65338137 1 + C T HNSC 65338137 + 65338117 65338157 41 CGAAGGTGCTGCAGGCGCGACGGGAGCGGCAAGATCGCATC CGAAGGTGCTGCAGGCGCGATGGGAGCGGCAAGATCGCATC Direct Loss 0.96913727780294 0 0.7718675 0.6890867 prediction 0.93827455560588 Functional Loss - SSSCA1 ENSG00000173465 CDS Human protein_coding chr11:65338137 chr11:65338137 nonsynonymous SNV 0.994 4 21 hm5C_associated_SNPs_47649 0 0 0 0 2 SSSCA1 chr11:65338075 3'AG 65338075 Downstream 63bp
chr11 65338137 65338137 1 + C T HNSC 65338137 + 65338117 65338157 41 CGAAGGTGCTGCAGGCGCGACGGGAGCGGCAAGATCGCATC CGAAGGTGCTGCAGGCGCGATGGGAGCGGCAAGATCGCATC Direct Loss 0.96913727780294 0 0.7718675 0.6890867 prediction 0.93827455560588 Functional Loss - SSSCA1 ENSG00000173465 CDS Human protein_coding chr11:65338137 chr11:65338137 nonsynonymous SNV 0.994 4 21 hm5C_associated_SNPs_47649 0 0 0 0 2 SSSCA1 chr11:65338226 5'GT 65338226 Upstream 90bp
chr19 19651071 19651071 1 + C T COAD 19651071 + 19651051 19651091 41 CCCGGAGGCGACGGCGACTTCGAGAGCCTGGCTGCCATCCG CCCGGAGGCGACGGCGACTTTGAGAGCCTGGCTGCCATCCG Direct Loss 0.969129655929118 0 0.92085016 0.8984246 prediction 0.938259311858237 Functional Loss - CILP2 ENSG00000160161 CDS Human protein_coding chr19:19651071 chr19:19651071 synonymous SNV . 0 21 hm5C_associated_SNPs_47651 0 0 0 0 2 CILP2 chr19:19650995 3'AG 19650995 Downstream 77bp
chr19 19651071 19651071 1 + C T COAD 19651071 + 19651051 19651091 41 CCCGGAGGCGACGGCGACTTCGAGAGCCTGGCTGCCATCCG CCCGGAGGCGACGGCGACTTTGAGAGCCTGGCTGCCATCCG Direct Loss 0.969129655929118 0 0.92085016 0.8984246 prediction 0.938259311858237 Functional Loss - CILP2 ENSG00000160161 CDS Human protein_coding chr19:19651071 chr19:19651071 synonymous SNV . 0 21 hm5C_associated_SNPs_47651 0 0 0 0 2 CILP2 chr19:19651013 3'AG 19651013 Downstream 59bp
chr21 35772119 35772119 1 + C T COAD 35772119 + 35772099 35772139 41 GACAAGGAAGGAAGGACAATCGGGAGGAGGGAGTCTTGCTT GACAAGGAAGGAAGGACAATTGGGAGGAGGGAGTCTTGCTT Direct Loss 0.96911699770601 0 0.94314826 0.9297584 prediction 0.938233995412019 Functional Loss - C21orf140 ENSG00000205670 CDS Human protein_coding chr21:35772119 chr21:35772119 synonymous SNV . 0 21 hm5C_associated_SNPs_47652 0 0 1 0 1 C21orf140 chr21:35772197 5'GT 35772197 Upstream 79bp
chr5 173416508 173416508 1 + C G rs115473626 173416508 + 173416488 173416528 41 GCTCAGGGTCCCCACGACCCCTGGTGTGGAGGCTGCGGCCT GCTCAGGGTCCCCACGACCCGTGGTGTGGAGGCTGCGGCCT Direct Loss 0.969087311594789 0 0.41289333 0.7337876 prediction 0.938174623189578 Functional Loss - C5orf47 ENSG00000185056 CDS Human protein_coding chr5:173416508 chr5:173416508 nonsynonymous SNV 0.008 0 21 hm5C_associated_SNPs_47654 0 0 0 0 1 C5orf47 chr5:173416591 5'GT 173416591 Upstream 84bp
chrX 7811586 7811586 1 + C T rs150071100 7811586 + 7811566 7811606 41 GCAGTTCGTAGAGGGAGACGCGGGAAGAAAGGGGCTGCGAC GCAGTTCGTAGAGGGAGACGTGGGAAGAAAGGGGCTGCGAC Direct Loss 0.96899163430637 0 0.9115659 0.88926375 prediction 0.937983268612741 Functional Loss - VCX ENSG00000182583 CDS Human protein_coding chrX:7811586 chrX:7811586 synonymous SNV . 0 21 hm5C_associated_SNPs_47658 0 0 0 0 1 VCX chrX:7811539 3'AG 7811539 Downstream 48bp
chr11 1902750 1902750 1 + C T UCEC 1902750 + 1902730 1902770 41 GGCCAGAGCAGCGGCAGCAGCACGAGGGGGCGCAGGGCGCC GGCCAGAGCAGCGGCAGCAGTACGAGGGGGCGCAGGGCGCC Direct Loss 0.968965046431096 0 0.7837639 0.8832642 prediction 0.937930092862193 Functional Loss - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1902750 chr11:1902750 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47659 0 0 0 0 2 LSP1 chr11:1902662 3'AG 1902662 Downstream 89bp
chr11 1902750 1902750 1 + C T UCEC 1902750 + 1902730 1902770 41 GGCCAGAGCAGCGGCAGCAGCACGAGGGGGCGCAGGGCGCC GGCCAGAGCAGCGGCAGCAGTACGAGGGGGCGCAGGGCGCC Direct Loss 0.968965046431096 0 0.7837639 0.8832642 prediction 0.937930092862193 Functional Loss - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1902750 chr11:1902750 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47659 0 0 0 0 2 LSP1 chr11:1902826 5'GT 1902826 Upstream 77bp
chr7 5266847 5266847 1 + C T COAD 5266847 + 5266827 5266867 41 ACCACCTGGACCGGGTACTTCGGGAAAGTGCTCATGGCCTC ACCACCTGGACCGGGTACTTTGGGAAAGTGCTCATGGCCTC Direct Loss 0.96894671665645 0 0.92705464 0.72326463 prediction 0.937893433312901 Functional Loss - WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5266847 chr7:5266847 synonymous SNV . 0 21 hm5C_associated_SNPs_47660 0 0 1 0 1 WIPI2 chr7:5266811 3'AG 5266811 Downstream 37bp
chrX 49106657 49106657 1 + C T UCEC 49106657 + 49106637 49106677 41 TCAGCAACCTGGAGAAGATCCGGGAGGACTACCGAGCCCTC TCAGCAACCTGGAGAAGATCTGGGAGGACTACCGAGCCCTC Direct Loss 0.968900537555901 0 0.91725284 0.91072583 prediction 0.937801075111802 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49106657 chrX:49106657 nonsynonymous SNV 0.975 1 21 hm5C_associated_SNPs_47663 0 0 1 0 1 CCDC22 chrX:49106609 3'AG 49106609 Downstream 49bp
chr6 17421817 17421817 1 + C G LGG 17421817 + 17421797 17421837 41 TGCAGGGACTGGTGGAAAGACTGGAACGAGCTGTCAGCCGC TGCAGGGACTGGTGGAAAGAGTGGAACGAGCTGTCAGCCGC Direct Loss 0.96888999343492 0 0.44256115 0.4804599 prediction 0.93777998686984 Functional Loss - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17421817 chr6:17421817 nonsynonymous SNV 0.626 4 21 hm5C_associated_SNPs_47665 0 0 1 0 2 CAP2 chr6:17421786 3'AG 17421786 Downstream 32bp
chr6 17421817 17421817 1 + C G LGG 17421817 + 17421797 17421837 41 TGCAGGGACTGGTGGAAAGACTGGAACGAGCTGTCAGCCGC TGCAGGGACTGGTGGAAAGAGTGGAACGAGCTGTCAGCCGC Direct Loss 0.96888999343492 0 0.44256115 0.4804599 prediction 0.93777998686984 Functional Loss - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17421817 chr6:17421817 nonsynonymous SNV 0.626 4 21 hm5C_associated_SNPs_47665 0 0 1 0 2 CAP2 chr6:17421907 5'GT 17421907 Upstream 91bp
chr12 124144076 124144076 1 + C T COAD 124144076 + 124144056 124144096 41 CTTGCAGGCTTGTGACATCACGGGAGGACTGTACCTGAAGG CTTGCAGGCTTGTGACATCATGGGAGGACTGTACCTGAAGG Direct Loss 0.968772441390272 0 0.9200134 0.88123834 prediction 0.937544882780543 Functional Loss - GTF2H3 ENSG00000111358 CDS Human protein_coding chr12:124144076 chr12:124144076 nonsynonymous SNV 0.936 4 21 hm5C_associated_SNPs_47669 0 0 1 0 2 GTF2H3 chr12:124144063 3'AG 124144063 Downstream 14bp
chr12 124144076 124144076 1 + C T COAD 124144076 + 124144056 124144096 41 CTTGCAGGCTTGTGACATCACGGGAGGACTGTACCTGAAGG CTTGCAGGCTTGTGACATCATGGGAGGACTGTACCTGAAGG Direct Loss 0.968772441390272 0 0.9200134 0.88123834 prediction 0.937544882780543 Functional Loss - GTF2H3 ENSG00000111358 CDS Human protein_coding chr12:124144076 chr12:124144076 nonsynonymous SNV 0.936 4 21 hm5C_associated_SNPs_47669 0 0 1 0 2 GTF2H3 chr12:124144131 5'GT 124144131 Upstream 56bp
chr14 96157121 96157121 1 + C T LUAD 96157121 + 96157101 96157141 41 GGCAGATGGCAGTGCATACCCGGGAGCTACTCTCCTCCGGC GGCAGATGGCAGTGCATACCTGGGAGCTACTCTCCTCCGGC Direct Loss 0.968746089920097 0 0.93462557 0.9159932 prediction 0.937492179840195 Functional Loss - TCL1B ENSG00000213231 CDS Human protein_coding chr14:96157121 chr14:96157121 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_47670 0 0 0 0 1 TCL1B chr14:96157073 3'AG 96157073 Downstream 49bp
chr5 14665063 14665063 1 + C G rs552866272 14665063 + 14665043 14665083 41 GCCAGCGGGCAGCCGCGGCCCGAGATGCAGTGCCCGGCCGA GCCAGCGGGCAGCCGCGGCCGGAGATGCAGTGCCCGGCCGA Direct Loss 0.968731083609208 0 0.7533667 0.89353746 prediction 0.937462167218417 Functional Loss - OTULIN ENSG00000154124 CDS Human protein_coding chr5:14665063 chr5:14665063 synonymous SNV . 0 21 hm5C_associated_SNPs_47673 0 0 1 0 1 OTULIN chr5:14665086 5'GT 14665086 Upstream 24bp
chr5 79950719 79950719 1 + C T rs201149584 79950719 + 79950699 79950739 41 TGCAGCGGCTGCAGCGGCCGCAGCGGCCGCAGCGCCCCCAG TGCAGCGGCTGCAGCGGCCGTAGCGGCCGCAGCGCCCCCAG Direct Loss 0.968726920753712 0 0.9090061 0.8635155 prediction 0.937453841507424 Functional Loss - MSH3 ENSG00000113318 CDS Human protein_coding chr5:79950719 chr5:79950719 nonsynonymous SNV 0.091 1 21 hm5C_associated_SNPs_47675 0 0 1 0 1 MSH3 chr5:79950783 5'GT 79950783 Upstream 65bp
chr16 25232874 25232874 1 + C T STAD 25232874 + 25232854 25232894 41 TACTGGGTCTCACAGCTGCTCGGGGGGATGCTCGGGGCTGC TACTGGGTCTCACAGCTGCTTGGGGGGATGCTCGGGGCTGC Direct Loss 0.968713832309356 0 0.92259467 0.88750863 prediction 0.937427664618713 Functional Loss - AQP8 ENSG00000103375 CDS Human protein_coding chr16:25232874 chr16:25232874 synonymous SNV . 0 21 hm5C_associated_SNPs_47676 0 0 0 0 2 AQP8 chr16:25232778 3'AG 25232778 Downstream 97bp
chr16 25232874 25232874 1 + C T STAD 25232874 + 25232854 25232894 41 TACTGGGTCTCACAGCTGCTCGGGGGGATGCTCGGGGCTGC TACTGGGTCTCACAGCTGCTTGGGGGGATGCTCGGGGCTGC Direct Loss 0.968713832309356 0 0.92259467 0.88750863 prediction 0.937427664618713 Functional Loss - AQP8 ENSG00000103375 CDS Human protein_coding chr16:25232874 chr16:25232874 synonymous SNV . 0 21 hm5C_associated_SNPs_47676 0 0 0 0 2 AQP8 chr16:25232904 5'GT 25232904 Upstream 31bp
chr1 197889149 197889149 1 + C T UCEC 197889149 + 197889129 197889169 41 CCCGCCCTGTGCGCCGGCTGCGGGGGCAAGATCTCGGACAG CCCGCCCTGTGCGCCGGCTGTGGGGGCAAGATCTCGGACAG Direct Loss 0.968697973754403 0 0.93805957 0.90875953 prediction 0.937395947508807 Functional Loss - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197889149 chr1:197889149 synonymous SNV . 0 21 hm5C_associated_SNPs_47677 0 0 0 0 1 LHX9 chr1:197889102 3'AG 197889102 Downstream 48bp
chrX 118708942 118708942 1 + C T SKCM 118708942 + 118708922 118708962 41 GTGTGGAACGCGGTCATTTTCGGGTGAGTCTGCGTTCGTGG GTGTGGAACGCGGTCATTTTTGGGTGAGTCTGCGTTCGTGG Direct Loss 0.968668154234737 0 0.9257392 0.88582444 prediction 0.937336308469473 Functional Loss - UBE2A ENSG00000077721 CDS Human protein_coding chrX:118708942 chrX:118708942 synonymous SNV . 0 21 hm5C_associated_SNPs_47680 0 0 1 0 2 UBE2A chrX:118708864 3'AG 118708864 Downstream 79bp
chrX 118708942 118708942 1 + C T SKCM 118708942 + 118708922 118708962 41 GTGTGGAACGCGGTCATTTTCGGGTGAGTCTGCGTTCGTGG GTGTGGAACGCGGTCATTTTTGGGTGAGTCTGCGTTCGTGG Direct Loss 0.968668154234737 0 0.9257392 0.88582444 prediction 0.937336308469473 Functional Loss - UBE2A ENSG00000077721 CDS Human protein_coding chrX:118708942 chrX:118708942 synonymous SNV . 0 21 hm5C_associated_SNPs_47680 0 0 1 0 2 UBE2A chrX:118708944 5'GT 118708944 Upstream 3bp
chr22 27026389 27026389 1 + C T STAD 27026389 + 27026369 27026409 41 CCGGTGACTACAAACATTTCCGGGAGTGGGGCTCTCATGCC CCGGTGACTACAAACATTTCTGGGAGTGGGGCTCTCATGCC Direct Loss 0.968617758530142 0 0.90649694 0.64411753 prediction 0.937235517060284 Functional Loss - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27026389 chr22:27026389 nonsynonymous SNV 0.978 2 21 hm5C_associated_SNPs_47685 0 0 0 0 1 CRYBA4 chr22:27026304 3'AG 27026304 Downstream 86bp
chr13 46287406 46287406 1 + C T UCEC 46287406 + 46287386 46287426 41 GCCCTGCCCCGGCTGAGCCGCAGGATGGCGAGCCAGCACTC GCCCTGCCCCGGCTGAGCCGTAGGATGGCGAGCCAGCACTC Direct Loss 0.968600888520306 0 0.9012944 0.87362486 prediction 0.937201777040613 Functional Loss - SPERT ENSG00000174015 CDS Human protein_coding chr13:46287406 chr13:46287406 synonymous SNV . 0 21 hm5C_associated_SNPs_47687 0 0 0 0 1 SPERT chr13:46287317 3'AG 46287317 Downstream 90bp
chr1 3390014 3390014 1 + C T COAD 3390014 + 3389994 3390034 41 ATTGAGAGGCGGCCGGCGTGCGGGGGCCTGCCCATGCTCTC ATTGAGAGGCGGCCGGCGTGTGGGGGCCTGCCCATGCTCTC Direct Loss 0.968377062993365 0 0.94782174 0.9262824 prediction 0.936754125986731 Functional Loss - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3390014 chr1:3390014 synonymous SNV . 0 21 hm5C_associated_SNPs_47694 0 0 1 0 2 ARHGEF16 chr1:3389957 3'AG 3389957 Downstream 58bp
chr1 3390014 3390014 1 + C T COAD 3390014 + 3389994 3390034 41 ATTGAGAGGCGGCCGGCGTGCGGGGGCCTGCCCATGCTCTC ATTGAGAGGCGGCCGGCGTGTGGGGGCCTGCCCATGCTCTC Direct Loss 0.968377062993365 0 0.94782174 0.9262824 prediction 0.936754125986731 Functional Loss - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3390014 chr1:3390014 synonymous SNV . 0 21 hm5C_associated_SNPs_47694 0 0 1 0 2 ARHGEF16 chr1:3390086 5'GT 3390086 Upstream 73bp
chr1 167086612 167086612 1 + C T CESC 167086612 + 167086592 167086632 41 ACGCAGAGTGTCCAGGCATGCTGGAGTCTGCTGAACAGCTG ACGCAGAGTGTCCAGGCATGTTGGAGTCTGCTGAACAGCTG Direct Loss 0.968290932024203 0 0.4902104 0.6793566 prediction 0.936581864048405 Functional Loss - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167086612 chr1:167086612 synonymous SNV . 0 21 hm5C_associated_SNPs_47702 0 0 0 0 1 DUSP27 chr1:167086565 3'AG 167086565 Downstream 48bp
chr19 14150702 14150702 1 + C T BLCA 14150702 + 14150682 14150722 41 AGTTCCACTACCGAAGATGTCAGGAGGCGGCCTGGACCCTG AGTTCCACTACCGAAGATGTTAGGAGGCGGCCTGGACCCTG Direct Loss 0.968276567737391 0 0.90528584 0.88726246 prediction 0.936553135474781 Functional Loss - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14150702 chr19:14150702 stopgain 0.201 0 21 hm5C_associated_SNPs_47703 0 0 0 0 1 IL27RA chr19:14150722 5'GT 14150722 Upstream 21bp
chr5 179023632 179023632 1 + C T UCEC 179023632 + 179023612 179023652 41 AAGCTGCAGCAGGAGCTGGGCGGGAGGATCGGCGCCCTGCA AAGCTGCAGCAGGAGCTGGGTGGGAGGATCGGCGCCCTGCA Direct Loss 0.968264472543972 0 0.9333644 0.9218582 prediction 0.936528945087944 Functional Loss - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179023632 chr5:179023632 synonymous SNV . 0 21 hm5C_associated_SNPs_47706 0 0 1 0 2 RUFY1 chr5:179023563 3'AG 179023563 Downstream 70bp
chr5 179023632 179023632 1 + C T UCEC 179023632 + 179023612 179023652 41 AAGCTGCAGCAGGAGCTGGGCGGGAGGATCGGCGCCCTGCA AAGCTGCAGCAGGAGCTGGGTGGGAGGATCGGCGCCCTGCA Direct Loss 0.968264472543972 0 0.9333644 0.9218582 prediction 0.936528945087944 Functional Loss - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179023632 chr5:179023632 synonymous SNV . 0 21 hm5C_associated_SNPs_47706 0 0 1 0 2 RUFY1 chr5:179023682 5'GT 179023682 Upstream 51bp
chr22 43435856 43435856 1 - G T KIRC 43435856 - 43435836 43435876 41 ACCGGGAGCTGAGAAGCCGTCAGGGTCAGTCTCTGGGGCCC ACCGGGAGCTGAGAAGCCGTAAGGGTCAGTCTCTGGGGCCC Direct Loss 0.968230952425538 0 0.90366316 0.8495051 prediction 0.936461904851076 Functional Loss - TTLL1 ENSG00000100271 CDS Human protein_coding chr22:43435856 chr22:43435856 nonsynonymous SNV 0.011 0 21 hm5C_associated_SNPs_47707 0 0 0 0 1 TTLL1 chr22:43435911 3'AG 43435911 Downstream 56bp
chr14 105715170 105715170 1 + C G rs186857534 105715170 + 105715150 105715190 41 GGCGCGGGGCGCGGCGTCCACAGGCGCCGAGGCTGCCCCCG GGCGCGGGGCGCGGCGTCCAGAGGCGCCGAGGCTGCCCCCG Direct Loss 0.968224677906665 0 0.90759575 0.9118272 prediction 0.936449355813331 Functional Loss - BTBD6 ENSG00000184887;ENSG00000185024 UTR5 Human other chr14:105715170 chr14:105715170 . . 0 21 hm5C_associated_SNPs_47709 0 0 1 0 1 BTBD6 chr14:105715119 3'AG 105715119 Downstream 52bp
chr22 38271929 38271929 1 + C T SKCM 38271929 + 38271909 38271949 41 ATTTGATGATGCGTCGTTACCAGGATGCCATCCGGGTCTTC ATTTGATGATGCGTCGTTACTAGGATGCCATCCGGGTCTTC Direct Loss 0.96815196396298 0 0.9182489 0.90436494 prediction 0.93630392792596 Functional Loss - EIF3L ENSG00000100129 CDS Human protein_coding chr22:38271929 chr22:38271929 stopgain 1.000 1 21 hm5C_associated_SNPs_47715 0 0 1 0 1 EIF3L chr22:38272018 5'GT 38272018 Upstream 90bp
chr10 12198980 12198980 1 + C T CESC 12198980 + 12198960 12199000 41 CGGACAAAGTCCGAGCTTTACGGGAGGCTTTTTATCGGCAG CGGACAAAGTCCGAGCTTTATGGGAGGCTTTTTATCGGCAG Direct Loss 0.968143585757668 0 0.84664744 0.7851 prediction 0.936287171515335 Functional Loss - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12198980 chr10:12198980 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_47716 0 0 1 0 2 SEC61A2 chr10:12198906 3'AG 12198906 Downstream 75bp
chr10 12198980 12198980 1 + C T CESC 12198980 + 12198960 12199000 41 CGGACAAAGTCCGAGCTTTACGGGAGGCTTTTTATCGGCAG CGGACAAAGTCCGAGCTTTATGGGAGGCTTTTTATCGGCAG Direct Loss 0.968143585757668 0 0.84664744 0.7851 prediction 0.936287171515335 Functional Loss - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12198980 chr10:12198980 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_47716 0 0 1 0 2 SEC61A2 chr10:12199066 5'GT 12199066 Upstream 87bp
chr8 24254921 24254921 1 + C T GBM 24254921 + 24254901 24254941 41 TGTGGTGTGAAGAGCACTGACGGGAAACAAGGCCCAATTCG TGTGGTGTGAAGAGCACTGATGGGAAACAAGGCCCAATTCG Direct Loss 0.968136028874867 0 0.7991785 0.40251178 prediction 0.936272057749734 Functional Loss - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24254921 chr8:24254921 synonymous SNV . 0 21 hm5C_associated_SNPs_47717 0 0 0 0 1 ADAMDEC1 chr8:24254969 5'GT 24254969 Upstream 49bp
chr13 49795333 49795333 1 + C T CESC 49795333 + 49795313 49795353 41 GCTGCGAGGCCCGGCCGCCTCGGGGCGGGAGAGAGGCCACC GCTGCGAGGCCCGGCCGCCTTGGGGCGGGAGAGAGGCCACC Direct Loss 0.968053960130161 0 0.91273534 0.83666337 prediction 0.936107920260323 Functional Loss - MLNR ENSG00000102539 CDS Human protein_coding chr13:49795333 chr13:49795333 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47722 0 0 0 0 1 MLNR chr13:49795374 5'GT 49795374 Upstream 42bp
chr19 36166854 36166854 1 + C T COAD 36166854 + 36166834 36166874 41 CCCACTGTGCTGTCGCCGGACGGGAAACTTCATCCCCCTCA CCCACTGTGCTGTCGCCGGATGGGAAACTTCATCCCCCTCA Direct Loss 0.968002074061759 0 0.43032098 0.1745356 prediction 0.936004148123518 Functional Loss - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36166854 chr19:36166854 nonsynonymous SNV 0.885 2 21 hm5C_associated_SNPs_47726 0 0 0 0 1 UPK1A chr19:36166921 5'GT 36166921 Upstream 68bp
chr2 238990408 238990408 1 + C T COAD 238990408 + 238990388 238990428 41 GCAGAGGTGGACGACATCCTCGCGGCAGTCCGCCCGACCAC GCAGAGGTGGACGACATCCTTGCGGCAGTCCGCCCGACCAC Direct Loss 0.967971466645873 0 0.89466614 0.80489624 prediction 0.935942933291746 Functional Loss - SCLY ENSG00000132330 CDS Human protein_coding chr2:238990408 chr2:238990408 synonymous SNV . 0 21 hm5C_associated_SNPs_47728 0 0 1 0 2 SCLY chr2:238990350 3'AG 238990350 Downstream 59bp
chr2 238990408 238990408 1 + C T COAD 238990408 + 238990388 238990428 41 GCAGAGGTGGACGACATCCTCGCGGCAGTCCGCCCGACCAC GCAGAGGTGGACGACATCCTTGCGGCAGTCCGCCCGACCAC Direct Loss 0.967971466645873 0 0.89466614 0.80489624 prediction 0.935942933291746 Functional Loss - SCLY ENSG00000132330 CDS Human protein_coding chr2:238990408 chr2:238990408 synonymous SNV . 0 21 hm5C_associated_SNPs_47728 0 0 1 0 2 SCLY chr2:238990477 5'GT 238990477 Upstream 70bp
chr19 35556910 35556910 1 + C T UCEC 35556910 + 35556890 35556930 41 ACACCAAAGTCAGTGACTTCCGGGAGTGGATCTTCCAGGCC ACACCAAAGTCAGTGACTTCTGGGAGTGGATCTTCCAGGCC Direct Loss 0.96792572229882 0 0.915477 0.87873995 prediction 0.93585144459764 Functional Loss - HPN ENSG00000105707 CDS Human protein_coding chr19:35556910 chr19:35556910 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_47732 0 0 0 0 1 HPN chr19:35556936 5'GT 35556936 Upstream 27bp
chr8 143558811 143558811 1 + C T STAD 143558811 + 143558791 143558831 41 GCACCTGTGGCCGTGGCTTTCGGGATCGCACGCGCACCTGC GCACCTGTGGCCGTGGCTTTTGGGATCGCACGCGCACCTGC Direct Loss 0.96791377463536 0 0.94154143 0.8915154 prediction 0.93582754927072 Functional Loss - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143558811 chr8:143558811 nonsynonymous SNV 0.994 3 21 hm5C_associated_SNPs_47734 0 0 0 0 2 ADGRB1 chr8:143558746 3'AG 143558746 Downstream 66bp
chr8 143558811 143558811 1 + C T STAD 143558811 + 143558791 143558831 41 GCACCTGTGGCCGTGGCTTTCGGGATCGCACGCGCACCTGC GCACCTGTGGCCGTGGCTTTTGGGATCGCACGCGCACCTGC Direct Loss 0.96791377463536 0 0.94154143 0.8915154 prediction 0.93582754927072 Functional Loss - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143558811 chr8:143558811 nonsynonymous SNV 0.994 3 21 hm5C_associated_SNPs_47734 0 0 0 0 2 ADGRB1 chr8:143558910 5'GT 143558910 Upstream 100bp
chr1 84764244 84764244 1 + C T LGG 84764244 + 84764224 84764264 41 AACCTCCCGGCGCGGCCATGCGGGGAGGTAAGTGATCTGCC AACCTCCCGGCGCGGCCATGTGGGGAGGTAAGTGATCTGCC Direct Loss 0.967871343326046 0 0.938321 0.91880256 prediction 0.935742686652092 Functional Loss - SAMD13 ENSG00000203943 CDS Human protein_coding chr1:84764244 chr1:84764244 nonsynonymous SNV 0.689 2 21 hm5C_associated_SNPs_47737 0 0 0 0 1 SAMD13 chr1:84764250 5'GT 84764250 Upstream 7bp
chr19 35551628 35551628 1 + C G KIRC 35551628 + 35551608 35551648 41 GGGTGCAGGCTGTGGTCTACCACGGGGGCTATCTTCCCTTT GGGTGCAGGCTGTGGTCTACGACGGGGGCTATCTTCCCTTT Direct Loss 0.967852325614617 0 0.83634514 0.36911494 prediction 0.935704651229234 Functional Loss - HPN ENSG00000105707 CDS Human protein_coding chr19:35551628 chr19:35551628 nonsynonymous SNV 0.789 5 21 hm5C_associated_SNPs_47739 0 0 1 0 2 HPN chr19:35551531 3'AG 35551531 Downstream 98bp
chr19 35551628 35551628 1 + C G KIRC 35551628 + 35551608 35551648 41 GGGTGCAGGCTGTGGTCTACCACGGGGGCTATCTTCCCTTT GGGTGCAGGCTGTGGTCTACGACGGGGGCTATCTTCCCTTT Direct Loss 0.967852325614617 0 0.83634514 0.36911494 prediction 0.935704651229234 Functional Loss - HPN ENSG00000105707 CDS Human protein_coding chr19:35551628 chr19:35551628 nonsynonymous SNV 0.789 5 21 hm5C_associated_SNPs_47739 0 0 1 0 2 HPN chr19:35551721 5'GT 35551721 Upstream 94bp
chr6 146865253 146865253 1 + C T KIRC 146865253 + 146865233 146865273 41 CGCCTGCAGCTGTGGGACATCGCGGGTAAGCGCGGCCGCGA CGCCTGCAGCTGTGGGACATTGCGGGTAAGCGCGGCCGCGA Direct Loss 0.967845075839029 0 0.92915285 0.9113078 prediction 0.935690151678058 Functional Loss - RAB32 ENSG00000118508 CDS Human protein_coding chr6:146865253 chr6:146865253 synonymous SNV . 0 21 hm5C_associated_SNPs_47740 0 0 1 0 1 RAB32 chr6:146865257 5'GT 146865257 Upstream 5bp
chr19 54695795 54695795 1 + C T BRCA 54695795 + 54695775 54695815 41 GACCAGTGATGGCCAGGCTTCGGGAGAGCAGGAGGAAGCTG GACCAGTGATGGCCAGGCTTTGGGAGAGCAGGAGGAAGCTG Direct Loss 0.967763946696483 0 0.9018655 0.7734918 prediction 0.935527893392967 Functional Loss - TSEN34 ENSG00000170892 CDS Human protein_coding chr19:54695795 chr19:54695795 nonsynonymous SNV 0.960 0 21 hm5C_associated_SNPs_47747 0 0 1 0 1 TSEN34 chr19:54695815 5'GT 54695815 Upstream 21bp
chr8 8860644 8860644 1 + C G rs61736769 8860644 + 8860624 8860664 41 GCTGCTGGAGTCGCCGCGGCCGGAGGGCGGGGAGGAGCCGC GCTGCTGGAGTCGCCGCGGCGGGAGGGCGGGGAGGAGCCGC Direct Loss 0.967746922105595 0 0.92206955 0.9172375 prediction 0.93549384421119 Functional Loss - ERI1 ENSG00000104626 CDS Human protein_coding chr8:8860644 chr8:8860644 nonsynonymous SNV 0.008 1 21 hm5C_associated_SNPs_47749 0 0 1 0 1 ERI1 chr8:8860681 5'GT 8860681 Upstream 38bp
chr6 139095001 139095001 1 + C T PRAD 139095001 + 139094981 139095021 41 CTGAGGCTGTCGGGTCTTTGCGGGTTGCGGAAGGGGGCCCC CTGAGGCTGTCGGGTCTTTGTGGGTTGCGGAAGGGGGCCCC Direct Loss 0.967711505962842 0 0.9098538 0.8889768 prediction 0.935423011925684 Functional Loss - CCDC28A ENSG00000024862 CDS Human protein_coding chr6:139095001 chr6:139095001 nonsynonymous SNV 0.017 2 21 hm5C_associated_SNPs_47750 0 0 1 0 1 CCDC28A chr6:139095039 5'GT 139095039 Upstream 39bp
chr1 47279175 47279175 1 + C T rs4646487 47279175 + 47279155 47279195 41 ACAAGTGGGAAGAGAAAGCTCGGGAGGGTAAGTCCTTTGAC ACAAGTGGGAAGAGAAAGCTTGGGAGGGTAAGTCCTTTGAC Direct Loss 0.967693078614088 0 0.90651417 0.57751 prediction 0.935386157228176 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47279175 chr1:47279175 nonsynonymous SNV 0.361 2 21 hm5C_associated_SNPs_47754 0 0 0 0 1 CYP4B1 chr1:47279154 3'AG 47279154 Downstream 22bp
chr1 109777925 109777925 1 + C T UCEC 109777925 + 109777905 109777945 41 AGCCCATTGCTGCCCTGCACCGGGATGAGTGGCTCCGGCCG AGCCCATTGCTGCCCTGCACTGGGATGAGTGGCTCCGGCCG Direct Loss 0.967645923475711 0 0.93627787 0.8773775 prediction 0.935291846951422 Functional Loss - SARS ENSG00000031698 CDS Human protein_coding chr1:109777925 chr1:109777925 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_47756 0 0 1 0 1 SARS chr1:109777832 3'AG 109777832 Downstream 94bp
chr1 100731936 100731936 1 + C T UCEC 100731936 + 100731916 100731956 41 CCCCAGGGTGTCCCCCATGGCGGGGCCGCGGGTGGAGGTCG CCCCAGGGTGTCCCCCATGGTGGGGCCGCGGGTGGAGGTCG Direct Loss 0.967610013080136 0 0.9056907 0.8204881 prediction 0.935220026160272 Functional Loss - RTCA ENSG00000137996 CDS Human protein_coding chr1:100731936 chr1:100731936 nonsynonymous SNV 0.797 0 21 hm5C_associated_SNPs_47758 0 0 1 0 1 RTCA chr1:100731976 5'GT 100731976 Upstream 41bp
chr8 48921026 48921026 1 + C T CESC 48921026 + 48921006 48921046 41 CAGGAGAAGATGGCGGTCTCCACAGGTCGGTTCCCGGGCCG CAGGAGAAGATGGCGGTCTCTACAGGTCGGTTCCCGGGCCG Direct Loss 0.967599847781369 0 0.82052445 0.82552975 prediction 0.935199695562739 Functional Loss - UBE2V2 ENSG00000169139 CDS Human protein_coding chr8:48921026 chr8:48921026 synonymous SNV . 0 21 hm5C_associated_SNPs_47760 0 0 1 0 1 UBE2V2 chr8:48921030 5'GT 48921030 Upstream 5bp
chr19 50357725 50357725 1 + C T LUSC 50357725 + 50357705 50357745 41 TCCTCACCTGGGCTCACCCTCGGGGGTCTGGCCGTGAGCGA TCCTCACCTGGGCTCACCCTTGGGGGTCTGGCCGTGAGCGA Direct Loss 0.967553858930426 0 0.9589544 0.92901444 prediction 0.935107717860852 Functional Loss - PTOV1 ENSG00000104960 CDS Human protein_coding chr19:50357725 chr19:50357725 synonymous SNV . 0 21 hm5C_associated_SNPs_47763 0 0 1 0 2 PTOV1 chr19:50357663 3'AG 50357663 Downstream 63bp
chr19 50357725 50357725 1 + C T LUSC 50357725 + 50357705 50357745 41 TCCTCACCTGGGCTCACCCTCGGGGGTCTGGCCGTGAGCGA TCCTCACCTGGGCTCACCCTTGGGGGTCTGGCCGTGAGCGA Direct Loss 0.967553858930426 0 0.9589544 0.92901444 prediction 0.935107717860852 Functional Loss - PTOV1 ENSG00000104960 CDS Human protein_coding chr19:50357725 chr19:50357725 synonymous SNV . 0 21 hm5C_associated_SNPs_47763 0 0 1 0 2 PTOV1 chr19:50357800 5'GT 50357800 Upstream 76bp
chr15 74336594 74336594 1 + C T rs142900813 74336594 + 74336574 74336614 41 GCCAGCTGGCTGCGGTGAACCGGGAAAGCAAGTTCCGCGTG GCCAGCTGGCTGCGGTGAACTGGGAAAGCAAGTTCCGCGTG Direct Loss 0.967494101698051 0 0.8941435 0.81793296 prediction 0.934988203396101 Functional Loss - PML ENSG00000140464 CDS Human protein_coding chr15:74336594 chr15:74336594 nonsynonymous SNV 0.399 1 21 hm5C_associated_SNPs_47768 0 0 0 0 1 PML chr15:74336562 3'AG 74336562 Downstream 33bp
chr6 43029098 43029098 1 + C T COAD 43029098 + 43029078 43029118 41 CAGGCCTGGTGTTGGGGCAGCGGGATGAGCCTGCAGGCCAC CAGGCCTGGTGTTGGGGCAGTGGGATGAGCCTGCAGGCCAC Direct Loss 0.967460765544236 0 0.91505027 0.90974796 prediction 0.934921531088472 Functional Loss - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43029098 chr6:43029098 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_47772 0 0 1 0 1 KLC4 chr6:43029049 3'AG 43029049 Downstream 50bp
chr5 141305002 141305002 1 + C T COAD 141305002 + 141304982 141305022 41 CCCCATGGCCCAGGCACGAGCGGGGGTCCAAGGTCCCATGG CCCCATGGCCCAGGCACGAGTGGGGGTCCAAGGTCCCATGG Direct Loss 0.967430617532664 0 0.9459433 0.9122199 prediction 0.934861235065328 Functional Loss - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141305002 chr5:141305002 synonymous SNV . 0 21 hm5C_associated_SNPs_47774 0 0 1 0 2 KIAA0141 chr5:141304975 3'AG 141304975 Downstream 28bp
chr5 141305002 141305002 1 + C T COAD 141305002 + 141304982 141305022 41 CCCCATGGCCCAGGCACGAGCGGGGGTCCAAGGTCCCATGG CCCCATGGCCCAGGCACGAGTGGGGGTCCAAGGTCCCATGG Direct Loss 0.967430617532664 0 0.9459433 0.9122199 prediction 0.934861235065328 Functional Loss - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141305002 chr5:141305002 synonymous SNV . 0 21 hm5C_associated_SNPs_47774 0 0 1 0 2 KIAA0141 chr5:141305092 5'GT 141305092 Upstream 91bp
chr5 38409153 38409153 1 + C T LIHC 38409153 + 38409133 38409173 41 TACTGTGGGGAGAACGAACACGGGAGGGGGGATTTCATGTC TACTGTGGGGAGAACGAACATGGGAGGGGGGATTTCATGTC Direct Loss 0.967382916321403 0 0.9182516 0.9183467 prediction 0.934765832642805 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38409153 chr5:38409153 synonymous SNV . 0 21 hm5C_associated_SNPs_47776 0 0 0 0 2 EGFLAM chr5:38409106 3'AG 38409106 Downstream 48bp
chr5 38409153 38409153 1 + C T LIHC 38409153 + 38409133 38409173 41 TACTGTGGGGAGAACGAACACGGGAGGGGGGATTTCATGTC TACTGTGGGGAGAACGAACATGGGAGGGGGGATTTCATGTC Direct Loss 0.967382916321403 0 0.9182516 0.9183467 prediction 0.934765832642805 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38409153 chr5:38409153 synonymous SNV . 0 21 hm5C_associated_SNPs_47776 0 0 0 0 2 EGFLAM chr5:38409206 5'GT 38409206 Upstream 54bp
chr14 93399101 93399101 1 + C T rs729940 93399101 + 93399081 93399121 41 GAGGCTGGAGGCCATCCTCCCGGGAGGACAGCCTTGAGGCG GAGGCTGGAGGCCATCCTCCTGGGAGGACAGCCTTGAGGCG Direct Loss 0.967341565721014 0 0.95911026 0.94092214 prediction 0.934683131442029 Functional Loss - CHGA ENSG00000100604 CDS Human protein_coding chr14:93399101 chr14:93399101 nonsynonymous SNV 0.620 2 21 hm5C_associated_SNPs_47778 0 0 0 0 1 CHGA chr14:93399196 5'GT 93399196 Upstream 96bp
chr11 120196015 120196015 1 + C G rs80100651 120196015 + 120195995 120196035 41 GCTCCTCCGCTTCCTGTTGCCGCGATCCGGGCCGGGAGCTG GCTCCTCCGCTTCCTGTTGCGGCGATCCGGGCCGGGAGCTG Direct Loss 0.967323636371671 0 0.8801122 0.92465186 prediction 0.934647272743342 Functional Loss - TMEM136 ENSG00000181264 UTR5 Human protein_coding chr11:120196015 chr11:120196015 . . 0 21 hm5C_associated_SNPs_47779 0 0 1 0 1 TMEM136 chr11:120196077 5'GT 120196077 Upstream 63bp
chr4 17625374 17625374 1 + C T LGG 17625374 + 17625354 17625394 41 CTCAGGGCTCCTTGGCCTACCTGGAGCAGGCATCTGCCAAC CTCAGGGCTCCTTGGCCTACTTGGAGCAGGCATCTGCCAAC Direct Loss 0.967267906442078 0 0.4140194 0.5325451 prediction 0.934535812884157 Functional Loss - MED28 ENSG00000118579 CDS Human protein_coding chr4:17625374 chr4:17625374 synonymous SNV . 0 21 hm5C_associated_SNPs_47782 0 0 1 1 1 MED28 chr4:17625417 5'GT 17625417 Upstream 44bp
chr5 135388723 135388723 1 + C T UCEC 135388723 + 135388703 135388743 41 GGGGACATGCTCACTATCAACGGGAAGGCGATCATCTCCAA GGGGACATGCTCACTATCAATGGGAAGGCGATCATCTCCAA Direct Loss 0.967222465050119 0 0.82915485 0.40315518 prediction 0.934444930100238 Functional Loss - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135388723 chr5:135388723 synonymous SNV . 0 21 hm5C_associated_SNPs_47785 0 0 1 0 1 TGFBI chr5:135388808 5'GT 135388808 Upstream 86bp
chr22 35730359 35730359 1 + C A UCEC 35730359 + 35730339 35730379 41 TGAGAGCTGGCCTGCAGTCTCTGGAGGCCTCTGGTCGACTG TGAGAGCTGGCCTGCAGTCTATGGAGGCCTCTGGTCGACTG Direct Loss 0.967192873281422 0 0.8663692 0.4321898 prediction 0.934385746562844 Functional Loss - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35730359 chr22:35730359 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_47787 0 0 1 0 1 TOM1 chr22:35730321 3'AG 35730321 Downstream 39bp
chr12 125550167 125550167 1 + C A UCEC 125550167 + 125550147 125550187 41 GCCCCGGTCGGGAGGAGATCCTGGAGTGCCAGGTGATGTGG GCCCCGGTCGGGAGGAGATCATGGAGTGCCAGGTGATGTGG Direct Loss 0.967147782501211 0 0.90147865 0.8879017 prediction 0.934295565002422 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125550167 chr12:125550167 nonsynonymous SNV 0.931 0 21 hm5C_associated_SNPs_47791 0 0 1 3 1 AACS chr12:125550263 5'GT 125550263 Upstream 97bp
chr14 24108151 24108151 1 + C A rs142650346 24108151 + 24108131 24108171 41 TCTGTGAGGATGAGCAGCACCGGGATAGACAGGAAGGGCGT TCTGTGAGGATGAGCAGCACAGGGATAGACAGGAAGGGCGT Direct Loss 0.967124781535611 0 0.87418497 0.7735249 prediction 0.934249563071222 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24108151 chr14:24108151 synonymous SNV . 0 21 hm5C_associated_SNPs_47792 0 0 1 0 1 DHRS2 chr14:24108213 5'GT 24108213 Upstream 63bp
chr11 65479743 65479743 1 + C T COAD 65479743 + 65479723 65479763 41 AGTGGAGGGAGGGAAGATGGCGGAGGTGGTGAGTCCGGTGC AGTGGAGGGAGGGAAGATGGTGGAGGTGGTGAGTCCGGTGC Direct Loss 0.967093842517747 0 0.8885646 0.7630222 prediction 0.934187685035494 Functional Loss - KAT5 ENSG00000172977 CDS Human protein_coding chr11:65479743 chr11:65479743 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_47794 0 0 1 0 1 KAT5 chr11:65479750 5'GT 65479750 Upstream 8bp
chr16 3706696 3706696 1 + C T UCEC 3706696 + 3706676 3706716 41 GATGATGGCTGCGAGCCCTGCGGGAACGACACCTTCAACCG GATGATGGCTGCGAGCCCTGTGGGAACGACACCTTCAACCG Direct Loss 0.967070788223803 0 0.8930246 0.83177865 prediction 0.934141576447605 Functional Loss - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3706696 chr16:3706696 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_47797 0 0 0 0 2 DNASE1 chr16:3706639 3'AG 3706639 Downstream 58bp
chr16 3706696 3706696 1 + C T UCEC 3706696 + 3706676 3706716 41 GATGATGGCTGCGAGCCCTGCGGGAACGACACCTTCAACCG GATGATGGCTGCGAGCCCTGTGGGAACGACACCTTCAACCG Direct Loss 0.967070788223803 0 0.8930246 0.83177865 prediction 0.934141576447605 Functional Loss - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3706696 chr16:3706696 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_47797 0 0 0 0 2 DNASE1 chr16:3706754 5'GT 3706754 Upstream 59bp
chr6 138725715 138725715 1 + C G rs377430480 138725715 + 138725695 138725735 41 GACGCCGGGCTGGAAGGCCCCGGAGGACGCCGGCCCCCAGG GACGCCGGGCTGGAAGGCCCGGGAGGACGCCGGCCCCCAGG Direct Loss 0.967037748596254 0 0.9050224 0.89895964 prediction 0.934075497192507 Functional Loss - HEBP2 ENSG00000051620 CDS Human protein_coding chr6:138725715 chr6:138725715 nonsynonymous SNV 0.060 0 21 hm5C_associated_SNPs_47799 0 0 1 0 1 HEBP2 chr6:138725734 5'GT 138725734 Upstream 20bp
chr12 48358029 48358029 1 + C A BLCA 48358029 + 48358009 48358049 41 ATATCACGGCCATGGGGTCTCAGCATTCCGCTGCTGCTCGC ATATCACGGCCATGGGGTCTAAGCATTCCGCTGCTGCTCGC Direct Loss 0.966977199124646 0 0.51229465 0.245401 prediction 0.933954398249292 Functional Loss - TMEM106C ENSG00000134291 CDS Human protein_coding chr12:48358029 chr12:48358029 nonsynonymous SNV 0.993 0 21 hm5C_associated_SNPs_47802 0 0 1 0 1 TMEM106C chr12:48357992 3'AG 48357992 Downstream 38bp
chr2 30480394 30480394 1 + C T COAD 30480394 + 30480374 30480414 41 ACAGAAGGGGAGGTGGAGAGCGGGGAGCTCCGGTGGCCCCC ACAGAAGGGGAGGTGGAGAGTGGGGAGCTCCGGTGGCCCCC Direct Loss 0.966932430949463 0 0.9376465 0.925291 prediction 0.933864861898926 Functional Loss - LBH ENSG00000213626 CDS Human protein_coding chr2:30480394 chr2:30480394 synonymous SNV . 0 21 hm5C_associated_SNPs_47805 0 0 0 0 1 LBH chr2:30480299 3'AG 30480299 Downstream 96bp
chrX 48458940 48458940 1 + C T CESC 48458940 + 48458920 48458960 41 CTGAGGATGGTCGCTGCATCCGAGAGATCCCTGACCCCGAT CTGAGGATGGTCGCTGCATCTGAGAGATCCCTGACCCCGAT Direct Loss 0.966917815564358 0 0.72561944 0.5522396 prediction 0.933835631128716 Functional Loss - WDR13 ENSG00000101940 CDS Human protein_coding chrX:48458940 chrX:48458940 stopgain 1.000 1 21 hm5C_associated_SNPs_47808 0 0 1 0 1 WDR13 chrX:48459014 5'GT 48459014 Upstream 75bp
chr7 6639964 6639964 1 + C G BLCA 6639964 + 6639944 6639984 41 TCTGCAGGTGGCCATGGCCTCAGGAGCTCTGCTGTGCACGA TCTGCAGGTGGCCATGGCCTGAGGAGCTCTGCTGTGCACGA Direct Loss 0.966824113203439 0 0.91982234 0.87624687 prediction 0.933648226406878 Functional Loss - C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6639964 chr7:6639964 stopgain 0.870 1 21 hm5C_associated_SNPs_47812 0 0 0 0 1 C7orf26 chr7:6639987 5'GT 6639987 Upstream 24bp
chr2 113343594 113343594 1 + C A UCEC 113343594 + 113343574 113343614 41 CTCGCTACTGTGGCCGGGAGCTGGAGCAGTATGGCCAGTGT CTCGCTACTGTGGCCGGGAGATGGAGCAGTATGGCCAGTGT Direct Loss 0.96680998546016 0 0.89926326 0.8234576 prediction 0.93361997092032 Functional Loss - CHCHD5 ENSG00000125611 CDS Human protein_coding chr2:113343594 chr2:113343594 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_47814 0 0 1 0 2 CHCHD5 chr2:113343551 3'AG 113343551 Downstream 44bp
chr2 113343594 113343594 1 + C A UCEC 113343594 + 113343574 113343614 41 CTCGCTACTGTGGCCGGGAGCTGGAGCAGTATGGCCAGTGT CTCGCTACTGTGGCCGGGAGATGGAGCAGTATGGCCAGTGT Direct Loss 0.96680998546016 0 0.89926326 0.8234576 prediction 0.93361997092032 Functional Loss - CHCHD5 ENSG00000125611 CDS Human protein_coding chr2:113343594 chr2:113343594 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_47814 0 0 1 0 2 CHCHD5 chr2:113343691 5'GT 113343691 Upstream 98bp
chr17 32597347 32597347 1 + C T UCEC 32597347 + 32597327 32597367 41 ACTTCTGTGTCTGCTGCTCACAGCAGCTGCTTTCAGCCCCC ACTTCTGTGTCTGCTGCTCATAGCAGCTGCTTTCAGCCCCC Direct Loss 0.966800985221931 0 0.85751164 0.67067266 prediction 0.933601970443863 Functional Loss - CCL7 ENSG00000108688 CDS Human protein_coding chr17:32597347 chr17:32597347 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_47817 0 0 0 0 1 CCL7 chr17:32597385 5'GT 32597385 Upstream 39bp
chr9 138441743 138441743 1 + C T SARC 138441743 + 138441723 138441763 41 AGACACAGAGCCCGGACCACCTGGACCTACCCTCCAGCCAT AGACACAGAGCCCGGACCACTTGGACCTACCCTCCAGCCAT Direct Loss 0.966798160242393 0 0.17259642 0.14964515 prediction 0.933596320484786 Functional Loss - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138441743 chr9:138441743 synonymous SNV 0.013 0 21 hm5C_associated_SNPs_47818 0 0 0 2 1 OBP2A chr9:138441683 3'AG 138441683 Downstream 61bp
chr17 58234821 58234821 1 + C T BLCA 58234821 + 58234801 58234841 41 GGAGAACAAGGCCAGCATTTCTGGAGGAGGACTGCCTGCCC GGAGAACAAGGCCAGCATTTTTGGAGGAGGACTGCCTGCCC Direct Loss 0.966776303976778 0 0.9022023 0.9003016 prediction 0.933552607953557 Functional Loss - CA4 ENSG00000167434 CDS Human protein_coding chr17:58234821 chr17:58234821 nonsynonymous SNV 0.026 0 21 hm5C_associated_SNPs_47820 0 0 0 0 1 CA4 chr17:58234788 3'AG 58234788 Downstream 34bp
chr8 120429131 120429131 1 + C T STAD 120429131 + 120429111 120429151 41 GTGGCGAGAGCTGCTCAGATCTGGAGCCATGCGACGAGAGC GTGGCGAGAGCTGCTCAGATTTGGAGCCATGCGACGAGAGC Direct Loss 0.966763063160925 0 0.43905297 0.57484686 prediction 0.933526126321851 Functional Loss - NOV ENSG00000136999 CDS Human protein_coding chr8:120429131 chr8:120429131 synonymous SNV . 0 21 hm5C_associated_SNPs_47822 0 0 0 0 1 NOV chr8:120429209 5'GT 120429209 Upstream 79bp
chr22 46685380 46685380 1 + C T rs11705624 46685380 + 46685360 46685400 41 GCCCTGGTGGAGGCTGAGGACGGGAACCCTGACCGCGTCCT GCCCTGGTGGAGGCTGAGGATGGGAACCCTGACCGCGTCCT Direct Loss 0.966747792811256 0 0.8909798 0.7601962 prediction 0.933495585622513 Functional Loss - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46685380 chr22:46685380 synonymous SNV . 0 21 hm5C_associated_SNPs_47823 0 0 1 0 2 TTC38 chr22:46685299 3'AG 46685299 Downstream 82bp
chr22 46685380 46685380 1 + C T rs11705624 46685380 + 46685360 46685400 41 GCCCTGGTGGAGGCTGAGGACGGGAACCCTGACCGCGTCCT GCCCTGGTGGAGGCTGAGGATGGGAACCCTGACCGCGTCCT Direct Loss 0.966747792811256 0 0.8909798 0.7601962 prediction 0.933495585622513 Functional Loss - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46685380 chr22:46685380 synonymous SNV . 0 21 hm5C_associated_SNPs_47823 0 0 1 0 2 TTC38 chr22:46685458 5'GT 46685458 Upstream 79bp
chrX 70384090 70384090 1 + C T UCEC 70384090 + 70384070 70384110 41 AGCGAGAATATTGCCTTCTTCGGGGGAGACCCCCGCCGGAT AGCGAGAATATTGCCTTCTTTGGGGGAGACCCCCGCCGGAT Direct Loss 0.966734147977596 0 0.9634896 0.9428219 prediction 0.933468295955192 Functional Loss - NLGN3 ENSG00000196338 CDS Human protein_coding chrX:70384090 chrX:70384090 synonymous SNV . 0 21 hm5C_associated_SNPs_47826 0 0 0 0 1 NLGN3 chrX:70383993 3'AG 70383993 Downstream 98bp
chr16 27459902 27459902 1 + C T UCEC 27459902 + 27459882 27459922 41 TCCAGCCTGGAGCTGGGACCCTGGAGCCCAGAGGTGCCCTC TCCAGCCTGGAGCTGGGACCTTGGAGCCCAGAGGTGCCCTC Direct Loss 0.966709203879204 0 0.7213758 0.8846953 prediction 0.933418407758407 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27459902 chr16:27459902 synonymous SNV . 0 21 hm5C_associated_SNPs_47832 0 0 0 0 1 IL21R chr16:27459855 3'AG 27459855 Downstream 48bp
chr11 65562573 65562573 1 + C T BLCA 65562573 + 65562553 65562593 41 CCTTCACGCAGCGCTGCTCTCTGGAGTCTCACCTCAAGAAG CCTTCACGCAGCGCTGCTCTTTGGAGTCTCACCTCAAGAAG Direct Loss 0.966694089265173 0 0.73657924 0.35005748 prediction 0.933388178530345 Functional Loss - OVOL1 ENSG00000172818 CDS Human protein_coding chr11:65562573 chr11:65562573 synonymous SNV . 0 21 hm5C_associated_SNPs_47833 0 0 0 0 1 OVOL1 chr11:65562517 3'AG 65562517 Downstream 57bp
chr20 43547605 43547605 1 + C T LUSC 43547605 + 43547585 43547625 41 CGGAGCTGGGGGCGCGGGCCCTGGAGTTCACCAACATCTAC CGGAGCTGGGGGCGCGGGCCTTGGAGTTCACCAACATCTAC Direct Loss 0.966689712015549 0 0.71608555 0.6986429 prediction 0.933379424031097 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43547605 chr20:43547605 synonymous SNV . 0 21 hm5C_associated_SNPs_47834 0 0 1 0 2 PABPC1L chr20:43547547 3'AG 43547547 Downstream 59bp
chr20 43547605 43547605 1 + C T LUSC 43547605 + 43547585 43547625 41 CGGAGCTGGGGGCGCGGGCCCTGGAGTTCACCAACATCTAC CGGAGCTGGGGGCGCGGGCCTTGGAGTTCACCAACATCTAC Direct Loss 0.966689712015549 0 0.71608555 0.6986429 prediction 0.933379424031097 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43547605 chr20:43547605 synonymous SNV . 0 21 hm5C_associated_SNPs_47834 0 0 1 0 2 PABPC1L chr20:43547686 5'GT 43547686 Upstream 82bp
chr5 150051173 150051173 1 + C A LUSC 150051173 + 150051153 150051193 41 TCCCAGATGCTGGCCGGAAGCGCCAGGAGGAAGGTGACTGG TCCCAGATGCTGGCCGGAAGAGCCAGGAGGAAGGTGACTGG Direct Loss 0.966679566942362 0 0.85019803 0.8003969 prediction 0.933359133884725 Functional Loss - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150051173 chr5:150051173 nonsynonymous SNV 0.081 0 21 hm5C_associated_SNPs_47836 0 0 0 0 2 MYOZ3 chr5:150051159 3'AG 150051159 Downstream 15bp
chr5 150051173 150051173 1 + C A LUSC 150051173 + 150051153 150051193 41 TCCCAGATGCTGGCCGGAAGCGCCAGGAGGAAGGTGACTGG TCCCAGATGCTGGCCGGAAGAGCCAGGAGGAAGGTGACTGG Direct Loss 0.966679566942362 0 0.85019803 0.8003969 prediction 0.933359133884725 Functional Loss - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150051173 chr5:150051173 nonsynonymous SNV 0.081 0 21 hm5C_associated_SNPs_47836 0 0 0 0 2 MYOZ3 chr5:150051212 5'GT 150051212 Upstream 40bp
chr16 23200920 23200920 1 + C T UCEC 23200920 + 23200900 23200940 41 ACAGGGAGGAAGCGGAAAGTCGGCGGTAGCATCATTCACAA ACAGGGAGGAAGCGGAAAGTTGGCGGTAGCATCATTCACAA Direct Loss 0.966583860193378 0 0.6884077 0.36810237 prediction 0.933167720386756 Functional Loss - SCNN1G ENSG00000166828 CDS Human protein_coding chr16:23200920 chr16:23200920 synonymous SNV . 0 21 hm5C_associated_SNPs_47841 0 0 0 0 1 SCNN1G chr16:23200992 5'GT 23200992 Upstream 73bp
chr17 7608955 7608955 1 + C T SKCM 7608955 + 7608935 7608975 41 GGGCCGGGGGGCGTGCGAGTCGGGGCCCTGCTGCTGCTGGG GGGCCGGGGGGCGTGCGAGTTGGGGCCCTGCTGCTGCTGGG Direct Loss 0.966546567898528 0 0.9297886 0.908527 prediction 0.933093135797056 Functional Loss - EFNB3 ENSG00000108947 CDS Human protein_coding chr17:7608955 chr17:7608955 synonymous SNV . 0 21 hm5C_associated_SNPs_47844 0 0 0 0 1 EFNB3 chr17:7609038 5'GT 7609038 Upstream 84bp
chr19 7986398 7986398 1 + C T rs199650219 7986398 + 7986378 7986418 41 GCCTTCAGGGACCAAGGCGCCGGGAGGCACAGCCCCCAGCC GCCTTCAGGGACCAAGGCGCTGGGAGGCACAGCCCCCAGCC Direct Loss 0.966540794393635 0 0.9150927 0.9081172 prediction 0.933081588787271 Functional Loss - SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7986398 chr19:7986398 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_47845 0 0 0 0 2 SNAPC2 chr19:7986308 3'AG 7986308 Downstream 91bp
chr19 7986398 7986398 1 + C T rs199650219 7986398 + 7986378 7986418 41 GCCTTCAGGGACCAAGGCGCCGGGAGGCACAGCCCCCAGCC GCCTTCAGGGACCAAGGCGCTGGGAGGCACAGCCCCCAGCC Direct Loss 0.966540794393635 0 0.9150927 0.9081172 prediction 0.933081588787271 Functional Loss - SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7986398 chr19:7986398 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_47845 0 0 0 0 2 SNAPC2 chr19:7986427 5'GT 7986427 Upstream 30bp
chr2 3727534 3727534 1 + C T COAD 3727534 + 3727514 3727554 41 CGTGGACGTTTCTTACTTCACGGGAGATTACGCTCCTCGAG CGTGGACGTTTCTTACTTCATGGGAGATTACGCTCCTCGAG Direct Loss 0.966536612223779 0 0.9307258 0.71740055 prediction 0.933073224447558 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3727534 chr2:3727534 nonsynonymous SNV 0.006 1 21 hm5C_associated_SNPs_47846 0 0 0 0 2 ALLC chr2:3727459 3'AG 3727459 Downstream 76bp
chr2 3727534 3727534 1 + C T COAD 3727534 + 3727514 3727554 41 CGTGGACGTTTCTTACTTCACGGGAGATTACGCTCCTCGAG CGTGGACGTTTCTTACTTCATGGGAGATTACGCTCCTCGAG Direct Loss 0.966536612223779 0 0.9307258 0.71740055 prediction 0.933073224447558 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3727534 chr2:3727534 nonsynonymous SNV 0.006 1 21 hm5C_associated_SNPs_47846 0 0 0 0 2 ALLC chr2:3727584 5'GT 3727584 Upstream 51bp
chr12 69651614 69651614 1 + C T SKCM 69651614 + 69651594 69651634 41 TAGAGGACGGGGCCGTTTTCCAGGGGCTGTTCCTGGTGGGG TAGAGGACGGGGCCGTTTTCTAGGGGCTGTTCCTGGTGGGG Direct Loss 0.966530009072595 0 0.95940006 0.93726945 prediction 0.933060018145189 Functional Loss - CPSF6 ENSG00000111605 CDS Human protein_coding chr12:69651614 chr12:69651614 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_47847 0 0 1 0 1 CPSF6 chr12:69651685 5'GT 69651685 Upstream 72bp
chrX 47032563 47032563 1 + C T UCEC 47032563 + 47032543 47032583 41 AGTCGCACGGCGTGCAAGCACGGGAGGTTCGGCTGATGCGG AGTCGCACGGCGTGCAAGCATGGGAGGTTCGGCTGATGCGG Direct Loss 0.966520508728313 0 0.9065907 0.8900546 prediction 0.933041017456627 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47032563 chrX:47032563 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_47848 0 0 1 0 2 RBM10 chrX:47032527 3'AG 47032527 Downstream 37bp
chrX 47032563 47032563 1 + C T UCEC 47032563 + 47032543 47032583 41 AGTCGCACGGCGTGCAAGCACGGGAGGTTCGGCTGATGCGG AGTCGCACGGCGTGCAAGCATGGGAGGTTCGGCTGATGCGG Direct Loss 0.966520508728313 0 0.9065907 0.8900546 prediction 0.933041017456627 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47032563 chrX:47032563 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_47848 0 0 1 0 2 RBM10 chrX:47032596 5'GT 47032596 Upstream 34bp
chr10 122216821 122216821 1 + C T UCEC 122216821 + 122216801 122216841 41 GCTGCTCCGGCCGCACCATGCGGGAGCTGGCCATTGAGATC GCTGCTCCGGCCGCACCATGTGGGAGCTGGCCATTGAGATC Direct Loss 0.966515149443843 0 0.9391763 0.9140054 prediction 0.933030298887687 Functional Loss - PLPP4 ENSG00000203805 CDS Human protein_coding chr10:122216821 chr10:122216821 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_47849 0 0 0 0 1 PLPP4 chr10:122216873 5'GT 122216873 Upstream 53bp
chr2 27373035 27373035 1 + C A BLCA 27373035 + 27373015 27373055 41 GCGCGGGAGCGGAGCCGGGTCAGGACGCTGCGCCAGGCCTT GCGCGGGAGCGGAGCCGGGTAAGGACGCTGCGCCAGGCCTT Direct Loss 0.966471971709635 0 0.8930559 0.83566105 prediction 0.932943943419269 Functional Loss - TCF23 ENSG00000163792 CDS Human protein_coding chr2:27373035 chr2:27373035 synonymous SNV . 0 21 hm5C_associated_SNPs_47851 0 0 0 0 1 TCF23 chr2:27372991 3'AG 27372991 Downstream 45bp
chr10 129875949 129875949 1 + C T SKCM 129875949 + 129875929 129875969 41 TTCCACGGCTGGCCTGAGATCGGGATTCCCGCCGAGGGCAA TTCCACGGCTGGCCTGAGATTGGGATTCCCGCCGAGGGCAA Direct Loss 0.966415988878342 0 0.9202667 0.86029625 prediction 0.932831977756683 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129875949 chr10:129875949 synonymous SNV . 0 21 hm5C_associated_SNPs_47854 0 0 0 0 2 PTPRE chr10:129875881 3'AG 129875881 Downstream 69bp
chr10 129875949 129875949 1 + C T SKCM 129875949 + 129875929 129875969 41 TTCCACGGCTGGCCTGAGATCGGGATTCCCGCCGAGGGCAA TTCCACGGCTGGCCTGAGATTGGGATTCCCGCCGAGGGCAA Direct Loss 0.966415988878342 0 0.9202667 0.86029625 prediction 0.932831977756683 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129875949 chr10:129875949 synonymous SNV . 0 21 hm5C_associated_SNPs_47854 0 0 0 0 2 PTPRE chr10:129876047 5'GT 129876047 Upstream 99bp
chr15 48413289 48413289 1 + C T STAD 48413289 + 48413269 48413309 41 GCGAGAAGGGCTCTGTTGCTCGGCATCCTGTGGGCCACTGC GCGAGAAGGGCTCTGTTGCTTGGCATCCTGTGGGCCACTGC Direct Loss 0.96640663477643 0 0.3572976 0.23119977 prediction 0.932813269552859 Functional Loss - SLC24A5 ENSG00000188467 CDS Human protein_coding chr15:48413289 chr15:48413289 synonymous SNV . 0 21 hm5C_associated_SNPs_47855 0 0 0 0 1 SLC24A5 chr15:48413362 5'GT 48413362 Upstream 74bp
chr3 10157440 10157440 1 + C T BRCA 10157440 + 10157420 10157460 41 TTCACCAGGACTGGGCTAACCGGGAGTACATTGAGATAATC TTCACCAGGACTGGGCTAACTGGGAGTACATTGAGATAATC Direct Loss 0.966324746928973 0 0.89549077 0.8855976 prediction 0.932649493857945 Functional Loss - BRK1 ENSG00000254999 CDS Human protein_coding chr3:10157440 chr3:10157440 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_47862 0 0 1 0 1 BRK1 chr3:10157503 5'GT 10157503 Upstream 64bp
chr8 39836622 39836622 1 + C T LUSC 39836622 + 39836602 39836642 41 GCCAGTTCCTGAAGGGTCACCGGGAGCAGCGCCTGGCCCAC GCCAGTTCCTGAAGGGTCACTGGGAGCAGCGCCTGGCCCAC Direct Loss 0.966288511620133 0 0.92608756 0.9141643 prediction 0.932577023240266 Functional Loss - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39836622 chr8:39836622 nonsynonymous SNV 0.908 3 21 hm5C_associated_SNPs_47865 0 0 0 0 2 IDO2 chr8:39836586 3'AG 39836586 Downstream 37bp
chr8 39836622 39836622 1 + C T LUSC 39836622 + 39836602 39836642 41 GCCAGTTCCTGAAGGGTCACCGGGAGCAGCGCCTGGCCCAC GCCAGTTCCTGAAGGGTCACTGGGAGCAGCGCCTGGCCCAC Direct Loss 0.966288511620133 0 0.92608756 0.9141643 prediction 0.932577023240266 Functional Loss - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39836622 chr8:39836622 nonsynonymous SNV 0.908 3 21 hm5C_associated_SNPs_47865 0 0 0 0 2 IDO2 chr8:39836705 5'GT 39836705 Upstream 84bp
chr22 38212245 38212245 1 + C T STAD 38212245 + 38212225 38212265 41 AGCTGCTGGCTTCACTATCTCGGGAGCCAGTCACCCCATCT AGCTGCTGGCTTCACTATCTTGGGAGCCAGTCACCCCATCT Direct Loss 0.966276979637283 0 0.9491142 0.92410135 prediction 0.932553959274566 Functional Loss - GCAT ENSG00000100116 CDS Human protein_coding chr22:38212245 chr22:38212245 nonsynonymous SNV 0.341 1 21 hm5C_associated_SNPs_47866 0 0 0 0 2 GCAT chr22:38212207 3'AG 38212207 Downstream 39bp
chr22 38212245 38212245 1 + C T STAD 38212245 + 38212225 38212265 41 AGCTGCTGGCTTCACTATCTCGGGAGCCAGTCACCCCATCT AGCTGCTGGCTTCACTATCTTGGGAGCCAGTCACCCCATCT Direct Loss 0.966276979637283 0 0.9491142 0.92410135 prediction 0.932553959274566 Functional Loss - GCAT ENSG00000100116 CDS Human protein_coding chr22:38212245 chr22:38212245 nonsynonymous SNV 0.341 1 21 hm5C_associated_SNPs_47866 0 0 0 0 2 GCAT chr22:38212328 5'GT 38212328 Upstream 84bp
chr19 518957 518957 1 + C A rs117112129 518957 + 518937 518977 41 CGGCGGGCGCAGGAAGAGGCCGGGGCTGGACGGGCGCACCT CGGCGGGCGCAGGAAGAGGCAGGGGCTGGACGGGCGCACCT Direct Loss 0.966264653774862 0 0.90415 0.9150775 prediction 0.932529307549725 Functional Loss - TPGS1 ENSG00000141933 CDS Human protein_coding chr19:518957 chr19:518957 nonsynonymous SNV 0.975 1 21 hm5C_associated_SNPs_47869 0 0 1 0 1 TPGS1 chr19:518889 3'AG 518889 Downstream 69bp
chr2 219222364 219222364 1 + C T KIRP 219222364 + 219222344 219222384 41 AGGTGCAGAGAGGGAAATACCAGGAAAAACTCGGCATGCTG AGGTGCAGAGAGGGAAATACTAGGAAAAACTCGGCATGCTG Direct Loss 0.966246730842784 0 0.88941205 0.4407649 prediction 0.932493461685569 Functional Loss - CATIP ENSG00000158428 CDS Human protein_coding chr2:219222364 chr2:219222364 stopgain 0.045 0 21 hm5C_associated_SNPs_47871 0 0 0 0 1 CATIP chr2:219222457 5'GT 219222457 Upstream 94bp
chr11 88242027 88242027 1 + C G rs569668690 88242027 + 88242007 88242047 41 GCCGCGGGCTGCGCGCCTCCCGTGACTTCGATGGCCGGCAG GCCGCGGGCTGCGCGCCTCCGGTGACTTCGATGGCCGGCAG Direct Loss 0.966234264037354 0 0.6309047 0.8679245 prediction 0.932468528074708 Functional Loss - GRM5 ENSG00000168959 CDS Human protein_coding chr11:88242027 chr11:88242027 synonymous SNV . 0 21 hm5C_associated_SNPs_47872 0 0 0 0 1 GRM5 chr11:88242107 5'GT 88242107 Upstream 81bp
chr10 29580889 29580889 1 + C A UCEC 29580889 + 29580869 29580909 41 TGCAAACTGGCAAAAATATTCTCGAGGGCTGGCCTGGACAA TGCAAACTGGCAAAAATATTATCGAGGGCTGGCCTGGACAA Direct Loss 0.96622743969463 0 0.5413528 0.13676533 prediction 0.93245487938926 Functional Loss - LYZL1 ENSG00000120563 CDS Human protein_coding chr10:29580889 chr10:29580889 nonsynonymous SNV 0.356 1 21 hm5C_associated_SNPs_47873 0 0 0 0 1 LYZL1 chr10:29580935 5'GT 29580935 Upstream 47bp
chr8 134237661 134237661 1 + C T STAD 134237661 + 134237641 134237681 41 GGTGAGGTGGAGGCATGGCACAGGAACTGCATAGCCTACAC GGTGAGGTGGAGGCATGGCATAGGAACTGCATAGCCTACAC Direct Loss 0.966216772738007 0 0.77422273 0.27992243 prediction 0.932433545476015 Functional Loss - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134237661 chr8:134237661 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_47874 0 0 0 0 1 WISP1 chr8:134237633 3'AG 134237633 Downstream 29bp
chr12 108956450 108956450 1 + C A rs142514490 108956450 + 108956430 108956470 41 GGGCGGCATCGGCTCTGCTGCTGCGGAGCCCCCGCCTGCCC GGGCGGCATCGGCTCTGCTGATGCGGAGCCCCCGCCTGCCC Direct Loss 0.966210075395606 0 0.8571076 0.8373334 prediction 0.932420150791212 Functional Loss - ISCU ENSG00000136003 CDS Human protein_coding chr12:108956450 chr12:108956450 nonsynonymous SNV 0.844 1 21 hm5C_associated_SNPs_47875 1 0 1 0 1 ISCU chr12:108956512 5'GT 108956512 Upstream 63bp
chr16 89650455 89650455 1 + C T BLCA 89650455 + 89650435 89650475 41 GGTGATCGCCGAGGACATCTCGGGGAACAACGGCTACGTGG GGTGATCGCCGAGGACATCTTGGGGAACAACGGCTACGTGG Direct Loss 0.96620958615539 0 0.9470296 0.91913337 prediction 0.93241917231078 Functional Loss - CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89650455 chr16:89650455 nonsynonymous SNV 0.971 2 21 hm5C_associated_SNPs_47876 0 0 1 0 2 CPNE7 chr16:89650436 3'AG 89650436 Downstream 20bp
chr16 89650455 89650455 1 + C T BLCA 89650455 + 89650435 89650475 41 GGTGATCGCCGAGGACATCTCGGGGAACAACGGCTACGTGG GGTGATCGCCGAGGACATCTTGGGGAACAACGGCTACGTGG Direct Loss 0.96620958615539 0 0.9470296 0.91913337 prediction 0.93241917231078 Functional Loss - CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89650455 chr16:89650455 nonsynonymous SNV 0.971 2 21 hm5C_associated_SNPs_47876 0 0 1 0 2 CPNE7 chr16:89650510 5'GT 89650510 Upstream 56bp
chr8 54852169 54852169 1 + C A THCA 54852169 + 54852149 54852189 41 AGCGGATGGAGATGCGGAAGCGGCAGATGCCCGCCGCCCAG AGCGGATGGAGATGCGGAAGAGGCAGATGCCCGCCGCCCAG Direct Loss 0.966205907454641 0 0.8993614 0.8826493 prediction 0.932411814909282 Functional Loss - RGS20 ENSG00000147509 CDS Human protein_coding chr8:54852169 chr8:54852169 synonymous SNV . 0 21 hm5C_associated_SNPs_47877 0 0 0 0 1 RGS20 chr8:54852136 3'AG 54852136 Downstream 34bp
chr21 41137504 41137504 1 + C A SARC 41137504 + 41137484 41137524 41 CATAGAAGGCCCCCAAAATGCAAGAGTCCTGAAGGGCTCCC CATAGAAGGCCCCCAAAATGAAAGAGTCCTGAAGGGCTCCC Direct Loss 0.966202281189705 0 0.45026574 0.36202264 prediction 0.93240456237941 Functional Loss - IGSF5 ENSG00000183067 CDS Human protein_coding chr21:41137504 chr21:41137504 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47878 0 0 0 0 1 IGSF5 chr21:41137462 3'AG 41137462 Downstream 43bp
chr22 42666026 42666026 1 + C T rs187166731 42666026 + 42666006 42666046 41 CACCCAAGGCCTCGCGCGACCAGCAGGTAGACCTTCCCTCC CACCCAAGGCCTCGCGCGACTAGCAGGTAGACCTTCCCTCC Direct Loss 0.966170881584307 0 0.7547095 0.19752535 prediction 0.932341763168614 Functional Loss - OGFRP1 ENSG00000182057 ncRNA_exonic Human lincRNA chr22:42666026 chr22:42666026 . . 0 21 hm5C_associated_SNPs_47882 0 1 0 1 1 OGFRP1 chr22:42666031 5'GT 42666031 Upstream 6bp
chr2 29258406 29258406 1 + C T HNSC 29258406 + 29258386 29258426 41 GGGAGATGGTGGAGCAGCTACGGGAGCTGACACGGCTGCTG GGGAGATGGTGGAGCAGCTATGGGAGCTGACACGGCTGCTG Direct Loss 0.9661590375565 0 0.89267063 0.89510757 prediction 0.932318075112999 Functional Loss - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29258406 chr2:29258406 nonsynonymous SNV 0.360 3 21 hm5C_associated_SNPs_47883 0 0 0 0 1 TOGARAM2 chr2:29258330 3'AG 29258330 Downstream 77bp
chr3 127788409 127788409 1 + C T rs147269024 127788409 + 127788389 127788429 41 GGCGCCATTGGGTCTGGAACCGGGATCCTGCTCGCAGTCAC GGCGCCATTGGGTCTGGAACTGGGATCCTGCTCGCAGTCAC Direct Loss 0.96610345369286 0 0.9072597 0.78515327 prediction 0.93220690738572 Functional Loss - SEC61A1 ENSG00000058262 CDS Human protein_coding chr3:127788409 chr3:127788409 synonymous SNV . 0 21 hm5C_associated_SNPs_47885 0 0 1 0 1 SEC61A1 chr3:127788319 3'AG 127788319 Downstream 91bp
chr4 83978134 83978134 1 + C T BLCA 83978134 + 83978114 83978154 41 TGAAGATTGCTAGGCTATATCTGGAGGATGATGATCCAGTC TGAAGATTGCTAGGCTATATTTGGAGGATGATGATCCAGTC Direct Loss 0.966074206614877 0 0.9077805 0.9086032 prediction 0.932148413229755 Functional Loss - COPS4 ENSG00000138663 CDS Human protein_coding chr4:83978134 chr4:83978134 synonymous SNV . 0 21 hm5C_associated_SNPs_47888 0 0 1 0 2 COPS4 chr4:83978079 3'AG 83978079 Downstream 56bp
chr4 83978134 83978134 1 + C T BLCA 83978134 + 83978114 83978154 41 TGAAGATTGCTAGGCTATATCTGGAGGATGATGATCCAGTC TGAAGATTGCTAGGCTATATTTGGAGGATGATGATCCAGTC Direct Loss 0.966074206614877 0 0.9077805 0.9086032 prediction 0.932148413229755 Functional Loss - COPS4 ENSG00000138663 CDS Human protein_coding chr4:83978134 chr4:83978134 synonymous SNV . 0 21 hm5C_associated_SNPs_47888 0 0 1 0 2 COPS4 chr4:83978232 5'GT 83978232 Upstream 99bp
chr7 130002336 130002336 1 + C T COAD 130002336 + 130002316 130002356 41 TTGACACTGGAATTCACTCCCGGGAGTGGATCACCCATGCC TTGACACTGGAATTCACTCCTGGGAGTGGATCACCCATGCC Direct Loss 0.966071442383387 0 0.9050261 0.80795217 prediction 0.932142884766773 Functional Loss - CPA5 ENSG00000158525 CDS Human protein_coding chr7:130002336 chr7:130002336 nonsynonymous SNV 0.986 4 21 hm5C_associated_SNPs_47889 0 0 0 0 2 CPA5 chr7:130002279 3'AG 130002279 Downstream 58bp
chr7 130002336 130002336 1 + C T COAD 130002336 + 130002316 130002356 41 TTGACACTGGAATTCACTCCCGGGAGTGGATCACCCATGCC TTGACACTGGAATTCACTCCTGGGAGTGGATCACCCATGCC Direct Loss 0.966071442383387 0 0.9050261 0.80795217 prediction 0.932142884766773 Functional Loss - CPA5 ENSG00000158525 CDS Human protein_coding chr7:130002336 chr7:130002336 nonsynonymous SNV 0.986 4 21 hm5C_associated_SNPs_47889 0 0 0 0 2 CPA5 chr7:130002380 5'GT 130002380 Upstream 45bp
chr19 11998756 11998756 1 + C T rs3810315 11998756 + 11998736 11998776 41 GCTATGCCCTGCTGTAGTCACAGGAGGTGTAGAGAGGACCC GCTATGCCCTGCTGTAGTCATAGGAGGTGTAGAGAGGACCC Direct Loss 0.966067600614944 0 0.8922601 0.8945484 prediction 0.932135201229887 Functional Loss - ZNF69 ENSG00000198429 CDS Human protein_coding chr19:11998756 chr19:11998756 synonymous SNV . 0 21 hm5C_associated_SNPs_47890 0 0 1 0 1 ZNF69 chr19:11998801 5'GT 11998801 Upstream 46bp
chr11 134147714 134147714 1 + C T UCEC 134147714 + 134147694 134147734 41 GGCCACAAGTTCCTGATCTTCGGGGGCTCCATCCACTATTT GGCCACAAGTTCCTGATCTTTGGGGGCTCCATCCACTATTT Direct Loss 0.966046753735109 0 0.9340498 0.9013616 prediction 0.932093507470218 Functional Loss - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134147714 chr11:134147714 synonymous SNV . 0 21 hm5C_associated_SNPs_47895 0 0 0 0 1 GLB1L3 chr11:134147806 5'GT 134147806 Upstream 93bp
chr6 167753656 167753656 1 + C T COAD 167753656 + 167753636 167753676 41 TCTTGAAGCCGCTGGTTTTTCGCGTTGACGAGACCACCCCG TCTTGAAGCCGCTGGTTTTTTGCGTTGACGAGACCACCCCG Direct Loss 0.965965021643718 0 0.7602011 0.5383392 prediction 0.931930043287436 Functional Loss - TTLL2 ENSG00000120440 CDS Human protein_coding chr6:167753656 chr6:167753656 nonsynonymous SNV 0.003 3 21 hm5C_associated_SNPs_47900 0 0 0 0 1 TTLL2 chr6:167753593 3'AG 167753593 Downstream 64bp
chr1 154207205 154207205 1 + C T COAD 154207205 + 154207185 154207225 41 GACGTGGTGGGCCACCAAGACGGGGGAGAGGTGCCAGCCGT GACGTGGTGGGCCACCAAGATGGGGGAGAGGTGCCAGCCGT Direct Loss 0.965927953496966 0 0.8993958 0.8551204 prediction 0.931855906993932 Functional Loss - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154207205 chr1:154207205 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_47901 0 0 1 0 1 UBAP2L chr1:154207268 5'GT 154207268 Upstream 64bp
chr5 178454513 178454513 1 + C A STAD 178454513 + 178454493 178454533 41 ATGTGGCCGTGTTCTTCAGCCAGGACGAGTGGTTGCACCTG ATGTGGCCGTGTTCTTCAGCAAGGACGAGTGGTTGCACCTG Direct Loss 0.965883562094254 0 0.8829112 0.7848205 prediction 0.931767124188508 Functional Loss - ZNF879 ENSG00000234284 CDS Human protein_coding chr5:178454513 chr5:178454513 nonsynonymous SNV 0.963 0 21 hm5C_associated_SNPs_47902 0 0 0 0 2 ZNF879 chr5:178454474 3'AG 178454474 Downstream 40bp
chr5 178454513 178454513 1 + C A STAD 178454513 + 178454493 178454533 41 ATGTGGCCGTGTTCTTCAGCCAGGACGAGTGGTTGCACCTG ATGTGGCCGTGTTCTTCAGCAAGGACGAGTGGTTGCACCTG Direct Loss 0.965883562094254 0 0.8829112 0.7848205 prediction 0.931767124188508 Functional Loss - ZNF879 ENSG00000234284 CDS Human protein_coding chr5:178454513 chr5:178454513 nonsynonymous SNV 0.963 0 21 hm5C_associated_SNPs_47902 0 0 0 0 2 ZNF879 chr5:178454600 5'GT 178454600 Upstream 88bp
chr17 42266703 42266703 1 + C T UCEC 42266703 + 42266683 42266723 41 CTGAAGAGGCGGGTGAAGGTCGGGGAGACTCCACTGGGGAG CTGAAGAGGCGGGTGAAGGTTGGGGAGACTCCACTGGGGAG Direct Loss 0.965873607916141 0 0.9378562 0.8215302 prediction 0.931747215832282 Functional Loss - TMUB2 ENSG00000168591 CDS Human protein_coding chr17:42266703 chr17:42266703 nonsynonymous SNV 0.971 1 21 hm5C_associated_SNPs_47903 0 0 1 0 1 TMUB2 chr17:42266667 3'AG 42266667 Downstream 37bp
chr11 120099657 120099657 1 + C T UCEC 120099657 + 120099637 120099677 41 GCTGCAGGCAGGTGGGGGACCACGGGAAGCCCTGCGTCTGC GCTGCAGGCAGGTGGGGGACTACGGGAAGCCCTGCGTCTGC Direct Loss 0.965867176907241 0 0.9068586 0.8986767 prediction 0.931734353814482 Functional Loss - OAF ENSG00000184232 CDS Human protein_coding chr11:120099657 chr11:120099657 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47904 0 0 0 0 1 OAF chr11:120099577 3'AG 120099577 Downstream 81bp
chr11 65338937 65338937 1 + C G UCEC 65338937 + 65338917 65338957 41 CTCAGAGCTCCCCCTGGGCTCTCGACCTGCGCCCCAGCCCC CTCAGAGCTCCCCCTGGGCTGTCGACCTGCGCCCCAGCCCC Direct Loss 0.96586614350897 0 0.20474201 0.03995678 prediction 0.931732287017939 Functional Loss - SSSCA1 ENSG00000173465 CDS Human protein_coding chr11:65338937 chr11:65338937 nonsynonymous SNV 0.072 1 21 hm5C_associated_SNPs_47905 0 0 0 0 1 SSSCA1 chr11:65338862 3'AG 65338862 Downstream 76bp
chr21 33785228 33785228 1 + C A rs146014823 33785228 + 33785208 33785248 41 TGCAGCATCCCGGCCTCCGCCGGCAGGTAGAGCCGCCGGGG TGCAGCATCCCGGCCTCCGCAGGCAGGTAGAGCCGCCGGGG Direct Loss 0.965796024058037 0 0.62745905 0.53631127 prediction 0.931592048116073 Functional Loss - EVA1C ENSG00000166979 CDS Human protein_coding chr21:33785228 chr21:33785228 synonymous SNV . 0 21 hm5C_associated_SNPs_47910 0 0 0 0 1 EVA1C chr21:33785321 5'GT 33785321 Upstream 94bp
chr10 134016186 134016186 1 + C T CESC 134016186 + 134016166 134016206 41 TCTTCGAGGGAGTGGAGTGCCGGGGAGCGCCTGCCGTGGTC TCTTCGAGGGAGTGGAGTGCTGGGGAGCGCCTGCCGTGGTC Direct Loss 0.965764918091182 0 0.8753948 0.8060861 prediction 0.931529836182364 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134016186 chr10:134016186 nonsynonymous SNV 0.934 3 21 hm5C_associated_SNPs_47912 0 0 1 0 1 DPYSL4 chr10:134016150 3'AG 134016150 Downstream 37bp
chr11 46723130 46723130 1 + C T UCEC 46723130 + 46723110 46723150 41 CGCTTGGGGGTCTGGTGTGTCGGGGACCCCCTGCAGCCCGG CGCTTGGGGGTCTGGTGTGTTGGGGACCCCCTGCAGCCCGG Direct Loss 0.965747402649483 0 0.93315995 0.8971927 prediction 0.931494805298966 Functional Loss - ZNF408 ENSG00000175213 CDS Human protein_coding chr11:46723130 chr11:46723130 synonymous SNV . 0 21 hm5C_associated_SNPs_47914 0 0 0 0 1 ZNF408 chr11:46723226 5'GT 46723226 Upstream 97bp
chr19 50910642 50910642 1 + C T UCEC 50910642 + 50910622 50910662 41 AGAGGGCGGCGAGGACTACACGGGAGCCACTGTCATCGAGC AGAGGGCGGCGAGGACTACATGGGAGCCACTGTCATCGAGC Direct Loss 0.965743586095847 0 0.87045753 0.65703344 prediction 0.931487172191695 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50910642 chr19:50910642 nonsynonymous SNV 0.995 2 21 hm5C_associated_SNPs_47916 1 0 0 0 1 POLD1 chr19:50910584 3'AG 50910584 Downstream 59bp
chr14 23311716 23311716 1 + C T GBM 23311716 + 23311696 23311736 41 GTGCCACACCACTGCGCTTCCGCGAGGTGCCCTATGCCTAC GTGCCACACCACTGCGCTTCTGCGAGGTGCCCTATGCCTAC Direct Loss 0.965725075828092 0 0.58818024 0.3480363 prediction 0.931450151656184 Functional Loss - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23311716 chr14:23311716 nonsynonymous SNV 0.987 4 21 hm5C_associated_SNPs_47919 0 0 0 0 1 MMP14 chr14:23311619 3'AG 23311619 Downstream 98bp
chr19 49378882 49378882 1 + C T UCEC 49378882 + 49378862 49378902 41 TGCCCGCAGGTGCGCTTCTCCGAGAAGGTCACTGTCCATTT TGCCCGCAGGTGCGCTTCTCTGAGAAGGTCACTGTCCATTT Direct Loss 0.965645598564806 0 0.84391236 0.47305885 prediction 0.931291197129613 Functional Loss - PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49378882 chr19:49378882 synonymous SNV . 0 21 hm5C_associated_SNPs_47925 0 0 1 0 1 PPP1R15A chr19:49378871 3'AG 49378871 Downstream 12bp
chr1 236908011 236908011 1 + C T COAD 236908011 + 236907991 236908031 41 CTGCGGAAGCACGAGGCGTTCGAGAGCGACCTGGCAGCGCA CTGCGGAAGCACGAGGCGTTTGAGAGCGACCTGGCAGCGCA Direct Loss 0.965587805204145 0 0.8985809 0.8892045 prediction 0.93117561040829 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236908011 chr1:236908011 synonymous SNV . 0 21 hm5C_associated_SNPs_47930 4 0 0 0 2 ACTN2 chr1:236907926 3'AG 236907926 Downstream 86bp
chr1 236908011 236908011 1 + C T COAD 236908011 + 236907991 236908031 41 CTGCGGAAGCACGAGGCGTTCGAGAGCGACCTGGCAGCGCA CTGCGGAAGCACGAGGCGTTTGAGAGCGACCTGGCAGCGCA Direct Loss 0.965587805204145 0 0.8985809 0.8892045 prediction 0.93117561040829 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236908011 chr1:236908011 synonymous SNV . 0 21 hm5C_associated_SNPs_47930 4 0 0 0 2 ACTN2 chr1:236908076 5'GT 236908076 Upstream 66bp
chr16 56711062 56711062 1 + C A rs117028388 56711062 + 56711042 56711082 41 TCCCTGGGAATCGCAGGGAGCGGGGGTGCTGGGCTGAGTCA TCCCTGGGAATCGCAGGGAGAGGGGGTGCTGGGCTGAGTCA Direct Loss 0.965586201103154 0 0.93287885 0.90864235 prediction 0.931172402206309 Functional Loss - MT1IP ENSG00000205358;ENSG00000187193 intergenic Human other chr16:56711062 chr16:56711062 . . 0 21 hm5C_associated_SNPs_47931 0 0 0 0 1 MT1IP chr16:56710983 3'AG 56710983 Downstream 80bp
chr7 142563789 142563789 1 + C T SKCM 142563789 + 142563769 142563809 41 TGCTACACTGGCGCCTGCCTCGGGAGCTGGGGGGTCGAGGG TGCTACACTGGCGCCTGCCTTGGGAGCTGGGGGGTCGAGGG Direct Loss 0.965569120613678 0 0.95104957 0.8250122 prediction 0.931138241227356 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142563789 chr7:142563789 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_47932 0 0 0 0 1 EPHB6 chr7:142563715 3'AG 142563715 Downstream 75bp
chr17 7479901 7479901 1 + C A rs550885428 7479901 + 7479881 7479921 41 GCCTCCTGTCACGCCTGTATCGGGGGCACCAACGTGCGTGC GCCTCCTGTCACGCCTGTATAGGGGGCACCAACGTGCGTGC Direct Loss 0.965519518154885 0 0.9779754 0.9391806 prediction 0.931039036309771 Functional Loss - EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479901 chr17:7479901 synonymous SNV . 0 21 hm5C_associated_SNPs_47933 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 60bp
chr7 44796724 44796724 1 + C T SKCM 44796724 + 44796704 44796744 41 GTACAGCCGCGGGGGCTACCCTGGGGCCCCCGGCTTCACCA GTACAGCCGCGGGGGCTACCTTGGGGCCCCCGGCTTCACCA Direct Loss 0.965491663775921 0 0.93932307 0.9383924 prediction 0.930983327551843 Functional Loss - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44796724 chr7:44796724 nonsynonymous SNV 0.942 4 21 hm5C_associated_SNPs_47936 0 0 1 0 2 ZMIZ2 chr7:44796642 3'AG 44796642 Downstream 83bp
chr7 44796724 44796724 1 + C T SKCM 44796724 + 44796704 44796744 41 GTACAGCCGCGGGGGCTACCCTGGGGCCCCCGGCTTCACCA GTACAGCCGCGGGGGCTACCTTGGGGCCCCCGGCTTCACCA Direct Loss 0.965491663775921 0 0.93932307 0.9383924 prediction 0.930983327551843 Functional Loss - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44796724 chr7:44796724 nonsynonymous SNV 0.942 4 21 hm5C_associated_SNPs_47936 0 0 1 0 2 ZMIZ2 chr7:44796748 5'GT 44796748 Upstream 25bp
chr1 156594421 156594421 1 + C T STAD 156594421 + 156594401 156594441 41 GAGGGTCTGGACTGGTGTAACGCGGGCTGGCTGCTCGAGGG GAGGGTCTGGACTGGTGTAATGCGGGCTGGCTGCTCGAGGG Direct Loss 0.965472845137854 0 0.9193157 0.89237154 prediction 0.930945690275708 Functional Loss - HAPLN2 ENSG00000132702 CDS Human protein_coding chr1:156594421 chr1:156594421 synonymous SNV . 0 21 hm5C_associated_SNPs_47937 0 0 1 0 1 HAPLN2 chr1:156594393 3'AG 156594393 Downstream 29bp
chr19 17654224 17654224 1 + C T STAD 17654224 + 17654204 17654244 41 GCCCAGAGGCTGGAGAGAGTCAGGGGGCGCGTGCTGAAGGT GCCCAGAGGCTGGAGAGAGTTAGGGGGCGCGTGCTGAAGGT Direct Loss 0.965436804989592 0 0.91356885 0.885826 prediction 0.930873609979184 Functional Loss - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17654224 chr19:17654224 synonymous SNV . 0 21 hm5C_associated_SNPs_47941 0 0 0 0 2 FAM129C chr19:17654126 3'AG 17654126 Downstream 99bp
chr19 17654224 17654224 1 + C T STAD 17654224 + 17654204 17654244 41 GCCCAGAGGCTGGAGAGAGTCAGGGGGCGCGTGCTGAAGGT GCCCAGAGGCTGGAGAGAGTTAGGGGGCGCGTGCTGAAGGT Direct Loss 0.965436804989592 0 0.91356885 0.885826 prediction 0.930873609979184 Functional Loss - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17654224 chr19:17654224 synonymous SNV . 0 21 hm5C_associated_SNPs_47941 0 0 0 0 2 FAM129C chr19:17654242 5'GT 17654242 Upstream 19bp
chr3 3168667 3168667 1 + C T rs541567431 3168667 + 3168647 3168687 41 GGTGGCGGCTGCGGCAACAGCGGGGCCGGTAAGCGGGCGCG GGTGGCGGCTGCGGCAACAGTGGGGCCGGTAAGCGGGCGCG Direct Loss 0.965414090733148 0 0.9103639 0.88480216 prediction 0.930828181466296 Functional Loss - TRNT1 ENSG00000072756 UTR5 Human protein_coding chr3:3168667 chr3:3168667 . . 0 21 hm5C_associated_SNPs_47945 0 0 1 0 1 TRNT1 chr3:3168674 5'GT 3168674 Upstream 8bp
chr7 92158209 92158209 1 + C T BLCA 92158209 + 92158189 92158229 41 GCGACACACGGGCCAAATATCGAGAGGGACGACGGCCTCGT GCGACACACGGGCCAAATATTGAGAGGGACGACGGCCTCGT Direct Loss 0.965393103869212 0 0.9360253 0.916062 prediction 0.930786207738425 Functional Loss - RBM48 ENSG00000127993 CDS Human protein_coding chr7:92158209 chr7:92158209 stopgain 0.913 1 21 hm5C_associated_SNPs_47948 0 0 1 0 1 RBM48 chr7:92158238 5'GT 92158238 Upstream 30bp
chr1 159799702 159799702 1 + C T STAD 159799702 + 159799682 159799722 41 GCCCAAGTGCTGAGCAAAGTCGGGGGCTCGGTGCTGCTGGT GCCCAAGTGCTGAGCAAAGTTGGGGGCTCGGTGCTGCTGGT Direct Loss 0.965337686586923 0 0.93824863 0.90584314 prediction 0.930675373173846 Functional Loss - SLAMF8 ENSG00000158714 CDS Human protein_coding chr1:159799702 chr1:159799702 synonymous SNV . 0 21 hm5C_associated_SNPs_47951 0 0 0 0 1 SLAMF8 chr1:159799656 3'AG 159799656 Downstream 47bp
chr12 52284397 52284397 1 + C T UCEC 52284397 + 52284377 52284417 41 TGACAGCAGTGGACCCTGTTCGGGGCAAGACGGCCCTGGAA TGACAGCAGTGGACCCTGTTTGGGGCAAGACGGCCCTGGAA Direct Loss 0.965300201188768 0 0.9435091 0.88504905 prediction 0.930600402377535 Functional Loss - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52284397 chr12:52284397 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_47955 0 0 0 0 1 ANKRD33 chr12:52284368 3'AG 52284368 Downstream 30bp
chr3 186302231 186302231 1 + C T UCEC 186302231 + 186302211 186302251 41 TTTTCTAGGTACATATTTCCCGGGATAAGATCACCAGGCCA TTTTCTAGGTACATATTTCCTGGGATAAGATCACCAGGCCA Direct Loss 0.965292701640617 0 0.8826175 0.7994057 prediction 0.930585403281234 Functional Loss - DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186302231 chr3:186302231 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_47957 0 0 1 0 1 DNAJB11 chr3:186302219 3'AG 186302219 Downstream 13bp
chr2 71206278 71206278 1 + C T COAD 71206278 + 71206258 71206298 41 AGTGCGCAGGCGACTGCCCTCGCCAGGCCGCGCCGCCCTGC AGTGCGCAGGCGACTGCCCTTGCCAGGCCGCGCCGCCCTGC Direct Loss 0.965292288183388 0 0.90618026 0.7492906 prediction 0.930584576366776 Functional Loss - ANKRD53 ENSG00000144031 CDS Human protein_coding chr2:71206278 chr2:71206278 synonymous SNV . 0 21 hm5C_associated_SNPs_47958 0 0 0 0 1 ANKRD53 chr2:71206227 3'AG 71206227 Downstream 52bp
chr22 50632869 50632869 1 + C T rs4838813 50632869 + 50632849 50632889 41 ACCCAGTTGGTGGCTGAGGACGGGAGCAGGGTGTACGTGGT ACCCAGTTGGTGGCTGAGGATGGGAGCAGGGTGTACGTGGT Direct Loss 0.965256196996907 0 0.90731406 0.86895144 prediction 0.930512393993815 Functional Loss - TRABD ENSG00000170638 CDS Human protein_coding chr22:50632869 chr22:50632869 synonymous SNV . 0 21 hm5C_associated_SNPs_47960 0 0 1 0 1 TRABD chr22:50632935 5'GT 50632935 Upstream 67bp
chr1 17603340 17603340 1 + C T rs34177351 17603340 + 17603320 17603360 41 GAAAAGCAGAAGTGTGGCCACGGGAGGGCCCTCCTGTTCCA GAAAAGCAGAAGTGTGGCCATGGGAGGGCCCTCCTGTTCCA Direct Loss 0.965240242354117 0 0.90826195 0.90847784 prediction 0.930480484708234 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17603340 chr1:17603340 synonymous SNV . 0 21 hm5C_associated_SNPs_47962 0 0 0 0 2 PADI3 chr1:17603269 3'AG 17603269 Downstream 72bp
chr1 17603340 17603340 1 + C T rs34177351 17603340 + 17603320 17603360 41 GAAAAGCAGAAGTGTGGCCACGGGAGGGCCCTCCTGTTCCA GAAAAGCAGAAGTGTGGCCATGGGAGGGCCCTCCTGTTCCA Direct Loss 0.965240242354117 0 0.90826195 0.90847784 prediction 0.930480484708234 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17603340 chr1:17603340 synonymous SNV . 0 21 hm5C_associated_SNPs_47962 0 0 0 0 2 PADI3 chr1:17603371 5'GT 17603371 Upstream 32bp
chr11 47600859 47600859 1 + C T THYM 47600859 + 47600839 47600879 41 TTCTGTTGCTGCCGGTGAGGCGGGAGAGCGCCGGGGCCGAC TTCTGTTGCTGCCGGTGAGGTGGGAGAGCGCCGGGGCCGAC Direct Loss 0.965233818176743 0 0.91577643 0.90523463 prediction 0.930467636353487 Functional Loss - NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600859 chr11:47600859 nonsynonymous SNV 0.824 1 21 hm5C_associated_SNPs_47963 0 0 1 0 2 NDUFS3 chr11:47600821 3'AG 47600821 Downstream 39bp
chr11 47600859 47600859 1 + C T THYM 47600859 + 47600839 47600879 41 TTCTGTTGCTGCCGGTGAGGCGGGAGAGCGCCGGGGCCGAC TTCTGTTGCTGCCGGTGAGGTGGGAGAGCGCCGGGGCCGAC Direct Loss 0.965233818176743 0 0.91577643 0.90523463 prediction 0.930467636353487 Functional Loss - NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600859 chr11:47600859 nonsynonymous SNV 0.824 1 21 hm5C_associated_SNPs_47963 0 0 1 0 2 NDUFS3 chr11:47600886 5'GT 47600886 Upstream 28bp
chr12 125576036 125576036 1 + C G LUAD 125576036 + 125576016 125576056 41 GCGGCAAGCATTGGTGCCATCTGGAGCTCCACGTCCCCGGA GCGGCAAGCATTGGTGCCATGTGGAGCTCCACGTCCCCGGA Direct Loss 0.965221383209155 0 0.9018222 0.87209415 prediction 0.93044276641831 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125576036 chr12:125576036 nonsynonymous SNV 0.957 3 21 hm5C_associated_SNPs_47964 0 0 1 1 2 AACS chr12:125575972 3'AG 125575972 Downstream 65bp
chr12 125576036 125576036 1 + C G LUAD 125576036 + 125576016 125576056 41 GCGGCAAGCATTGGTGCCATCTGGAGCTCCACGTCCCCGGA GCGGCAAGCATTGGTGCCATGTGGAGCTCCACGTCCCCGGA Direct Loss 0.965221383209155 0 0.9018222 0.87209415 prediction 0.93044276641831 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125576036 chr12:125576036 nonsynonymous SNV 0.957 3 21 hm5C_associated_SNPs_47964 0 0 1 1 2 AACS chr12:125576069 5'GT 125576069 Upstream 34bp
chr19 41630672 41630672 1 + C A LUSC 41630672 + 41630652 41630692 41 GGTGGGACGCGCGCGGCTGCCGGCGCTGAAGGACCGCGCGG GGTGGGACGCGCGCGGCTGCAGGCGCTGAAGGACCGCGCGG Direct Loss 0.965208279642407 0 0.903034 0.8630751 prediction 0.930416559284813 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41630672 chr19:41630672 nonsynonymous SNV 0.006 3 21 hm5C_associated_SNPs_47967 0 0 0 0 1 CYP2F1 chr19:41630624 3'AG 41630624 Downstream 49bp
chr19 49439407 49439407 1 + C T UCEC 49439407 + 49439387 49439427 41 GTGAACGCGGCGGAAGTTCGCGAGATGGTCGCGGAGGCCCG GTGAACGCGGCGGAAGTTCGTGAGATGGTCGCGGAGGCCCG Direct Loss 0.965159840400404 0 0.90458757 0.85773176 prediction 0.930319680800807 Functional Loss - DHDH ENSG00000104808 CDS Human protein_coding chr19:49439407 chr19:49439407 synonymous SNV . 0 21 hm5C_associated_SNPs_47969 0 0 0 0 1 DHDH chr19:49439452 5'GT 49439452 Upstream 46bp
chr3 183858428 183858428 1 + C T LUSC 183858428 + 183858408 183858448 41 GCCTGGGCCATGGCAGCATCCTAGAGGAAAATGTGCTCCTG GCCTGGGCCATGGCAGCATCTTAGAGGAAAATGTGCTCCTG Direct Loss 0.965146023566752 0 0.49987882 0.6313844 prediction 0.930292047133504 Functional Loss - EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183858428 chr3:183858428 synonymous SNV . 0 21 hm5C_associated_SNPs_47970 0 0 1 0 1 EIF2B5 chr3:183858518 5'GT 183858518 Upstream 91bp
chr6 168445589 168445589 1 + C T SKCM 168445589 + 168445569 168445609 41 ACGTTGCAGGGCCTGGGTTTCGGGATCCGAGCTCGGCAAGT ACGTTGCAGGGCCTGGGTTTTGGGATCCGAGCTCGGCAAGT Direct Loss 0.965137106615411 0 0.93796396 0.9048781 prediction 0.930274213230822 Functional Loss - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168445589 chr6:168445589 synonymous SNV . 0 21 hm5C_associated_SNPs_47971 0 0 0 0 1 KIF25 chr6:168445507 3'AG 168445507 Downstream 83bp
chr15 74174054 74174054 1 + C T SKCM 74174054 + 74174034 74174074 41 ACTTCTCATGGCAGAGTTCCCAGGATGAGCGGCTCACGGTG ACTTCTCATGGCAGAGTTCCTAGGATGAGCGGCTCACGGTG Direct Loss 0.965054882169109 0 0.9410997 0.9281916 prediction 0.930109764338218 Functional Loss - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74174054 chr15:74174054 stopgain 0.998 0 21 hm5C_associated_SNPs_47975 0 0 0 0 1 TBC1D21 chr15:74174088 5'GT 74174088 Upstream 35bp
chr1 219347257 219347257 1 + C T SKCM 219347257 + 219347237 219347277 41 CGGCTGCGTCGGGGTCGGTTCTGCAGCGCTGTATCGTGTCG CGGCTGCGTCGGGGTCGGTTTTGCAGCGCTGTATCGTGTCG Direct Loss 0.965043890439235 0 0.7265045 0.630825 prediction 0.93008778087847 Functional Loss - LYPLAL1 ENSG00000143353 CDS Human protein_coding chr1:219347257 chr1:219347257 synonymous SNV . 0 21 hm5C_associated_SNPs_47977 0 0 1 0 1 LYPLAL1 chr1:219347323 5'GT 219347323 Upstream 67bp
chr22 25603066 25603066 1 + C T ESCA 25603066 + 25603046 25603086 41 GGCGCCAGTACGTGTTTGAGCGGGGCGAGTACCGCCACTGG GGCGCCAGTACGTGTTTGAGTGGGGCGAGTACCGCCACTGG Direct Loss 0.965032590658809 0 0.9365438 0.91398215 prediction 0.930065181317618 Functional Loss - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25603066 chr22:25603066 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_47980 0 0 0 0 1 CRYBB3 chr22:25603014 3'AG 25603014 Downstream 53bp
chr8 37963254 37963254 1 + C A STAD 37963254 + 37963234 37963274 41 AGTTCCGGGGAGGCTGAAGGCGGGTAAGAGGTCCTGCCGCC AGTTCCGGGGAGGCTGAAGGAGGGTAAGAGGTCCTGCCGCC Direct Loss 0.965013261020719 0 0.89299864 0.89993083 prediction 0.930026522041438 Functional Loss - ASH2L ENSG00000129691 CDS Human protein_coding chr8:37963254 chr8:37963254 synonymous SNV . 0 21 hm5C_associated_SNPs_47981 0 0 1 0 1 ASH2L chr8:37963256 5'GT 37963256 Upstream 3bp
chr16 2011826 2011826 1 + C A COAD 2011826 + 2011806 2011846 41 CTGGGGGCCTACAGTTCTGCCAGGAAGTGCCTGGCCAAACA CTGGGGGCCTACAGTTCTGCAAGGAAGTGCCTGGCCAAACA Direct Loss 0.964990044939402 0 0.7042792 0.40857452 prediction 0.929980089878804 Functional Loss - NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011826 chr16:2011826 nonsynonymous SNV 0.890 1 21 hm5C_associated_SNPs_47984 0 0 1 0 1 NDUFB10 chr16:2011798 3'AG 2011798 Downstream 29bp
chr3 120499981 120499981 1 + C T rs115958474 120499981 + 120499961 120500001 41 ATGCGAGCACTGCTCATTCACGAGAAAAAGACTTCCTCTGC ATGCGAGCACTGCTCATTCATGAGAAAAAGACTTCCTCTGC Direct Loss 0.964976652227801 0 0.8958101 0.73401606 prediction 0.929953304455601 Functional Loss - GTF2E1 ENSG00000153767 CDS Human protein_coding chr3:120499981 chr3:120499981 synonymous SNV . 0 21 hm5C_associated_SNPs_47985 0 0 1 0 1 GTF2E1 chr3:120499890 3'AG 120499890 Downstream 92bp
chr13 25264599 25264599 1 + C T LUAD 25264599 + 25264579 25264619 41 ACATCAGGGTGCTGTCTTCTCAGGGGTGTCGGGTAAGCGGC ACATCAGGGTGCTGTCTTCTTAGGGGTGTCGGGTAAGCGGC Direct Loss 0.964968594083426 0 0.93618613 0.9058485 prediction 0.929937188166852 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25264599 chr13:25264599 stopgain 0.053 1 21 hm5C_associated_SNPs_47986 0 0 0 0 1 ATP12A chr13:25264610 5'GT 25264610 Upstream 12bp
chr8 120886125 120886125 1 + C T LUSC 120886125 + 120886105 120886145 41 ACTGGCAGTGCTGGCAGTGACAGCAGCACCAGCGGGAGTGG ACTGGCAGTGCTGGCAGTGATAGCAGCACCAGCGGGAGTGG Direct Loss 0.964916522202253 0 0.6934326 0.67947114 prediction 0.929833044404505 Functional Loss - DEPTOR ENSG00000155792 CDS Human protein_coding chr8:120886125 chr8:120886125 synonymous SNV . 0 21 hm5C_associated_SNPs_47988 0 0 0 0 1 DEPTOR chr8:120886208 5'GT 120886208 Upstream 84bp
chrX 30236752 30236752 1 + C T UCS 30236752 + 30236732 30236772 41 GTGAGAAACGCCGCAAGGCCCGAGATGAGACCCGGGGTCTC GTGAGAAACGCCGCAAGGCCTGAGATGAGACCCGGGGTCTC Direct Loss 0.964912420243159 0 0.5911511 0.3697134 prediction 0.929824840486317 Functional Loss - MAGEB2 ENSG00000099399 CDS Human protein_coding chrX:30236752 chrX:30236752 stopgain 0.001 0 21 hm5C_associated_SNPs_47989 0 0 1 0 1 MAGEB2 chrX:30236693 3'AG 30236693 Downstream 60bp
chr8 145534897 145534897 1 + C T GBM 145534897 + 145534877 145534917 41 GGCGGGAGGTGGCCAGCCTTCGGCAGAAGCATGCCCAGCAA GGCGGGAGGTGGCCAGCCTTTGGCAGAAGCATGCCCAGCAA Direct Loss 0.964906967577747 0 0.900554 0.7626543 prediction 0.929813935155494 Functional Loss - HSF1 ENSG00000185122 CDS Human protein_coding chr8:145534897 chr8:145534897 nonsynonymous SNV 0.980 2 21 hm5C_associated_SNPs_47992 0 0 1 0 2 HSF1 chr8:145534860 3'AG 145534860 Downstream 38bp
chr8 145534897 145534897 1 + C T GBM 145534897 + 145534877 145534917 41 GGCGGGAGGTGGCCAGCCTTCGGCAGAAGCATGCCCAGCAA GGCGGGAGGTGGCCAGCCTTTGGCAGAAGCATGCCCAGCAA Direct Loss 0.964906967577747 0 0.900554 0.7626543 prediction 0.929813935155494 Functional Loss - HSF1 ENSG00000185122 CDS Human protein_coding chr8:145534897 chr8:145534897 nonsynonymous SNV 0.980 2 21 hm5C_associated_SNPs_47992 0 0 1 0 2 HSF1 chr8:145534935 5'GT 145534935 Upstream 39bp
chr11 45921711 45921711 1 + C T rs560597368 45921711 + 45921691 45921731 41 CCCGCGCGCCGGGCTGCTCTCTGCGGGCGGCGGCGGCGCGG CCCGCGCGCCGGGCTGCTCTTTGCGGGCGGCGGCGGCGCGG Direct Loss 0.964878115079582 0 0.90864813 0.6098214 prediction 0.929756230159164 Functional Loss - MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45921711 chr11:45921711 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_47993 0 0 0 0 1 MAPK8IP1 chr11:45921689 3'AG 45921689 Downstream 23bp
chr19 17425177 17425177 1 + C A THCA 17425177 + 17425157 17425197 41 CCTCAGTCTACCTGCCTACCCGCGAGTACCCGTCTGAACAG CCTCAGTCTACCTGCCTACCAGCGAGTACCCGTCTGAACAG Direct Loss 0.964853869792291 0 0.6003982 0.33901912 prediction 0.929707739584582 Functional Loss - DDA1 ENSG00000130311 CDS Human protein_coding chr19:17425177 chr19:17425177 nonsynonymous SNV 0.805 1 21 hm5C_associated_SNPs_47994 0 0 0 0 1 DDA1 chr19:17425147 3'AG 17425147 Downstream 31bp
chr20 44642908 44642908 1 + C T rs202160464 44642908 + 44642888 44642928 41 CTGTTCAGCGGGCGGCGCCTCTGGAGGTGAGCGCCGCCGCG CTGTTCAGCGGGCGGCGCCTTTGGAGGTGAGCGCCGCCGCG Direct Loss 0.964825279474904 0 0.773298 0.8448832 prediction 0.929650558949807 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44642908 chr20:44642908 synonymous SNV . 0 21 hm5C_associated_SNPs_47997 1 0 0 0 1 MMP9 chr20:44642913 5'GT 44642913 Upstream 6bp
chr18 670782 670782 1 + C A LUAD 670782 + 670762 670802 41 CTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTCGGTG CTGCCAGCTGTACCAGAGATAGGGAGACATGGGCCTCGGTG Direct Loss 0.964820857456718 0 0.9552013 0.920949 prediction 0.929641714913437 Functional Loss - TYMS ENSG00000176890 CDS Human protein_coding chr18:670782 chr18:670782 stopgain 0.988 1 21 hm5C_associated_SNPs_47998 0 0 1 0 2 TYMS chr18:670692 3'AG 670692 Downstream 91bp
chr18 670782 670782 1 + C A LUAD 670782 + 670762 670802 41 CTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTCGGTG CTGCCAGCTGTACCAGAGATAGGGAGACATGGGCCTCGGTG Direct Loss 0.964820857456718 0 0.9552013 0.920949 prediction 0.929641714913437 Functional Loss - TYMS ENSG00000176890 CDS Human protein_coding chr18:670782 chr18:670782 stopgain 0.988 1 21 hm5C_associated_SNPs_47998 0 0 1 0 2 TYMS chr18:670867 5'GT 670867 Upstream 86bp
chr15 63335907 63335907 1 + C G rs201720832 63335907 + 63335887 63335927 41 GCCCGCCGCTGCCCCCAGCTCGAGGAGGACATCGCGGCCAA GCCCGCCGCTGCCCCCAGCTGGAGGAGGACATCGCGGCCAA Direct Loss 0.96478626476062 0 0.9311687 0.912313 prediction 0.92957252952124 Functional Loss - TPM1 ENSG00000140416 CDS Human protein_coding chr15:63335907 chr15:63335907 synonymous SNV . 0 21 hm5C_associated_SNPs_47999 1 0 1 0 1 TPM1 chr15:63335905 3'AG 63335905 Downstream 3bp
chr15 45564553 45564553 1 + C A LUAD 45564553 + 45564533 45564573 41 TGTGGTCAGGGCCCTCTTCACAGGGGCCTGTGTATCCCTTA TGTGGTCAGGGCCCTCTTCAAAGGGGCCTGTGTATCCCTTA Direct Loss 0.964757226192719 0 0.93459415 0.85911834 prediction 0.929514452385437 Functional Loss - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45564553 chr15:45564553 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_48002 0 0 0 0 2 SLC28A2 chr15:45564493 3'AG 45564493 Downstream 61bp
chr15 45564553 45564553 1 + C A LUAD 45564553 + 45564533 45564573 41 TGTGGTCAGGGCCCTCTTCACAGGGGCCTGTGTATCCCTTA TGTGGTCAGGGCCCTCTTCAAAGGGGCCTGTGTATCCCTTA Direct Loss 0.964757226192719 0 0.93459415 0.85911834 prediction 0.929514452385437 Functional Loss - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45564553 chr15:45564553 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_48002 0 0 0 0 2 SLC28A2 chr15:45564591 5'GT 45564591 Upstream 39bp
chr11 57135570 57135570 1 + C T rs200102602 57135570 + 57135550 57135590 41 CGCTTCGACGTGCTGGTATACGGGAATGTGAGTCCATGGGC CGCTTCGACGTGCTGGTATATGGGAATGTGAGTCCATGGGC Direct Loss 0.964753870598917 0 0.80274355 0.36088446 prediction 0.929507741197835 Functional Loss - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57135570 chr11:57135570 synonymous SNV 0.985 0 21 hm5C_associated_SNPs_48004 0 0 0 0 2 P2RX3 chr11:57135483 3'AG 57135483 Downstream 88bp
chr11 57135570 57135570 1 + C T rs200102602 57135570 + 57135550 57135590 41 CGCTTCGACGTGCTGGTATACGGGAATGTGAGTCCATGGGC CGCTTCGACGTGCTGGTATATGGGAATGTGAGTCCATGGGC Direct Loss 0.964753870598917 0 0.80274355 0.36088446 prediction 0.929507741197835 Functional Loss - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57135570 chr11:57135570 synonymous SNV 0.985 0 21 hm5C_associated_SNPs_48004 0 0 0 0 2 P2RX3 chr11:57135576 5'GT 57135576 Upstream 7bp
chr19 44339668 44339668 1 + C A LGG 44339668 + 44339648 44339688 41 CCTCCCCAGTTCTGGCTTTTCTGGATTCTGTGCTTCACCAA CCTCCCCAGTTCTGGCTTTTATGGATTCTGTGCTTCACCAA Direct Loss 0.96475068952175 0 0.47196302 0.29821718 prediction 0.929501379043501 Functional Loss - ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44339668 chr19:44339668 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_48005 0 0 1 0 2 ZNF283 chr19:44339657 3'AG 44339657 Downstream 12bp
chr19 44339668 44339668 1 + C A LGG 44339668 + 44339648 44339688 41 CCTCCCCAGTTCTGGCTTTTCTGGATTCTGTGCTTCACCAA CCTCCCCAGTTCTGGCTTTTATGGATTCTGTGCTTCACCAA Direct Loss 0.96475068952175 0 0.47196302 0.29821718 prediction 0.929501379043501 Functional Loss - ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44339668 chr19:44339668 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_48005 0 0 1 0 2 ZNF283 chr19:44339744 5'GT 44339744 Upstream 77bp
chr19 49671280 49671280 1 + C T rs201410152 49671280 + 49671260 49671300 41 GGTGTCAGTGCTGGGGGGATCGGGGGGCCCCGTCCTCCAGA GGTGTCAGTGCTGGGGGGATTGGGGGGCCCCGTCCTCCAGA Direct Loss 0.964736420364399 0 0.97050846 0.95429003 prediction 0.929472840728798 Functional Loss - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49671280 chr19:49671280 nonsynonymous SNV 0.693 2 21 hm5C_associated_SNPs_48006 0 0 1 0 1 TRPM4 chr19:49671354 5'GT 49671354 Upstream 75bp
chr18 29099859 29099859 1 + C T OV 29099859 + 29099839 29099879 41 TCACCGCCCCCGTGGCTCTTCGGGAGGGAGAGGATCTGTCC TCACCGCCCCCGTGGCTCTTTGGGAGGGAGAGGATCTGTCC Direct Loss 0.964688456240517 0 0.90064585 0.894221 prediction 0.929376912481034 Functional Loss - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29099859 chr18:29099859 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_48009 0 0 1 0 2 DSG2 chr18:29099766 3'AG 29099766 Downstream 94bp
chr18 29099859 29099859 1 + C T OV 29099859 + 29099839 29099879 41 TCACCGCCCCCGTGGCTCTTCGGGAGGGAGAGGATCTGTCC TCACCGCCCCCGTGGCTCTTTGGGAGGGAGAGGATCTGTCC Direct Loss 0.964688456240517 0 0.90064585 0.894221 prediction 0.929376912481034 Functional Loss - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29099859 chr18:29099859 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_48009 0 0 1 0 2 DSG2 chr18:29099900 5'GT 29099900 Upstream 42bp
chr1 156028163 156028163 1 + C T COAD 156028163 + 156028143 156028183 41 CCCAAGTGGCGGCATCTTAACGGCATTGGTGGAAGCTGGGG CCCAAGTGGCGGCATCTTAATGGCATTGGTGGAAGCTGGGG Direct Loss 0.964685293162286 0 0.5891903 0.22342306 prediction 0.929370586324572 Functional Loss - LAMTOR2 ENSG00000116586 CDS Human protein_coding chr1:156028163 chr1:156028163 nonsynonymous SNV 0.046 1 21 hm5C_associated_SNPs_48011 0 0 1 0 1 LAMTOR2 chr1:156028106 3'AG 156028106 Downstream 58bp
chr12 54676893 54676893 1 + C G LIHC 54676893 + 54676873 54676913 41 AGGAGGCGGCCCTGGTTACTCTGGAGGAAGCAGAGGCTATG AGGAGGCGGCCCTGGTTACTGTGGAGGAAGCAGAGGCTATG Direct Loss 0.964665361662888 0 0.5360369 0.4641318 prediction 0.929330723325775 Functional Loss - HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54676893 chr12:54676893 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_48014 0 0 1 1 1 HNRNPA1 chr12:54676863 3'AG 54676863 Downstream 31bp
chr12 81112735 81112735 1 + C A HNSC 81112735 + 81112715 81112755 41 AGCAACCTGGGTTGCCTCTCCAGGATCTGGCTTCTCTCTCT AGCAACCTGGGTTGCCTCTCAAGGATCTGGCTTCTCTCTCT Direct Loss 0.964647273465386 0 0.91257405 0.91896 prediction 0.929294546930771 Functional Loss - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81112735 chr12:81112735 nonsynonymous SNV 0.797 2 21 hm5C_associated_SNPs_48016 0 0 0 0 1 MYF5 chr12:81112640 3'AG 81112640 Downstream 96bp
chr19 6739716 6739716 1 + C G rs564768719 6739716 + 6739696 6739736 41 TCCCCGGGGAGGGCGGCGGGCGGCGGGCGGCGGGGACCGGG TCCCCGGGGAGGGCGGCGGGGGGCGGGCGGCGGGGACCGGG Direct Loss 0.964624501262189 0 0.90066236 0.9099143 prediction 0.929249002524378 Functional Loss - TRIP10 ENSG00000125733 UTR5 Human protein_coding chr19:6739716 chr19:6739716 . . 0 21 hm5C_associated_SNPs_48019 0 0 1 0 1 TRIP10 chr19:6739796 5'GT 6739796 Upstream 81bp
chrX 47038780 47038780 1 + C T STAD 47038780 + 47038760 47038800 41 AGACACTGCCACTGGGTGGCCGGGAGCTGAGCCAGGGCCTG AGACACTGCCACTGGGTGGCTGGGAGCTGAGCCAGGGCCTG Direct Loss 0.964568564927663 0 0.90946305 0.84256065 prediction 0.929137129855327 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47038780 chrX:47038780 nonsynonymous SNV 0.989 2 21 hm5C_associated_SNPs_48024 0 0 1 0 1 RBM10 chrX:47038718 3'AG 47038718 Downstream 63bp
chr19 17417054 17417054 1 + C A BLCA 17417054 + 17417034 17417074 41 AGCAGGCCCGGGGCAAGGCTCGCGGGAATGAGTATCAGCCG AGCAGGCCCGGGGCAAGGCTAGCGGGAATGAGTATCAGCCG Direct Loss 0.964564350870275 0 0.90752083 0.3666594 prediction 0.929128701740549 Functional Loss - MRPL34 ENSG00000130312 CDS Human protein_coding chr19:17417054 chr19:17417054 nonsynonymous SNV 0.350 4 21 hm5C_associated_SNPs_48026 0 0 1 0 1 MRPL34 chr19:17416975 3'AG 17416975 Downstream 80bp
chr7 141408858 141408858 1 + C G rs200952105 141408858 + 141408838 141408878 41 ACACCAGCCCAACCAGACAGCAGGAGCAAGCTGCTGCCCAG ACACCAGCCCAACCAGACAGGAGGAGCAAGCTGCTGCCCAG Direct Loss 0.964548404405547 0 0.84108734 0.70175546 prediction 0.929096808811095 Functional Loss - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141408858 chr7:141408858 nonsynonymous SNV 0.007 0 21 hm5C_associated_SNPs_48028 0 0 0 0 1 WEE2 chr7:141408900 5'GT 141408900 Upstream 43bp
chr16 56839443 56839443 1 + C T UCEC 56839443 + 56839423 56839463 41 GCATGGCTGAGGAGTACCATCGGGAGTCAATGTTGGTTGAG GCATGGCTGAGGAGTACCATTGGGAGTCAATGTTGGTTGAG Direct Loss 0.964534062443646 0 0.9134739 0.8890003 prediction 0.929068124887293 Functional Loss - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56839443 chr16:56839443 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_48030 0 0 1 0 1 NUP93 chr16:56839416 3'AG 56839416 Downstream 28bp
chrX 153666940 153666940 1 + C T STAD 153666940 + 153666920 153666960 41 ATGGACCGGAACCCCTACTACGGGGGCGAGAGCTCCTCCAT ATGGACCGGAACCCCTACTATGGGGGCGAGAGCTCCTCCAT Direct Loss 0.964504745330332 0 0.9348258 0.9153229 prediction 0.929009490660665 Functional Loss - GDI1 ENSG00000203879 CDS Human protein_coding chrX:153666940 chrX:153666940 synonymous SNV . 0 21 hm5C_associated_SNPs_48032 0 0 1 0 2 GDI1 chrX:153666869 3'AG 153666869 Downstream 72bp
chrX 153666940 153666940 1 + C T STAD 153666940 + 153666920 153666960 41 ATGGACCGGAACCCCTACTACGGGGGCGAGAGCTCCTCCAT ATGGACCGGAACCCCTACTATGGGGGCGAGAGCTCCTCCAT Direct Loss 0.964504745330332 0 0.9348258 0.9153229 prediction 0.929009490660665 Functional Loss - GDI1 ENSG00000203879 CDS Human protein_coding chrX:153666940 chrX:153666940 synonymous SNV . 0 21 hm5C_associated_SNPs_48032 0 0 1 0 2 GDI1 chrX:153666976 5'GT 153666976 Upstream 37bp
chr16 57597817 57597817 1 + C T GBM 57597817 + 57597797 57597837 41 AGTTCCCCGCCGAGCTGACCCGGGACGCCTGCAAGACCCGC AGTTCCCCGCCGAGCTGACCTGGGACGCCTGCAAGACCCGC Direct Loss 0.96448518761249 0 0.73082733 0.5154182 prediction 0.928970375224981 Functional Loss - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57597817 chr16:57597817 nonsynonymous SNV 0.017 2 21 hm5C_associated_SNPs_48035 0 0 0 0 2 ADGRG5 chr16:57597760 3'AG 57597760 Downstream 58bp
chr16 57597817 57597817 1 + C T GBM 57597817 + 57597797 57597837 41 AGTTCCCCGCCGAGCTGACCCGGGACGCCTGCAAGACCCGC AGTTCCCCGCCGAGCTGACCTGGGACGCCTGCAAGACCCGC Direct Loss 0.96448518761249 0 0.73082733 0.5154182 prediction 0.928970375224981 Functional Loss - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57597817 chr16:57597817 nonsynonymous SNV 0.017 2 21 hm5C_associated_SNPs_48035 0 0 0 0 2 ADGRG5 chr16:57597891 5'GT 57597891 Upstream 75bp
chrX 18646646 18646646 1 + C T UCEC 18646646 + 18646626 18646666 41 CCCCTGAGCCAGGCCTCTGGCGGGAGCAGCAACATCCGGCA CCCCTGAGCCAGGCCTCTGGTGGGAGCAGCAACATCCGGCA Direct Loss 0.964471539920922 0 0.9112915 0.7797402 prediction 0.928943079841844 Functional Loss - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18646646 chrX:18646646 synonymous SNV . 0 21 hm5C_associated_SNPs_48036 0 0 0 0 1 CDKL5 chrX:18646707 5'GT 18646707 Upstream 62bp
chr3 111718443 111718443 1 + C T rs34554755 111718443 + 111718423 111718463 41 TTTCAGAAATGGTTAATGGACGGGACGGTAAGGCCGGCAGC TTTCAGAAATGGTTAATGGATGGGACGGTAAGGCCGGCAGC Direct Loss 0.964459849868519 0 0.3355837 0.2636596 prediction 0.928919699737038 Functional Loss - TAGLN3 ENSG00000144834 CDS Human protein_coding chr3:111718443 chr3:111718443 synonymous SNV . 0 21 hm5C_associated_SNPs_48037 0 0 0 0 1 TAGLN3 chr3:111718449 5'GT 111718449 Upstream 7bp
chr10 75675065 75675065 1 + C T COAD 75675065 + 75675045 75675085 41 TTGTGAAGCTGATTTCCCACCGGGAGTGTCAGCAGCCCCAC TTGTGAAGCTGATTTCCCACTGGGAGTGTCAGCAGCCCCAC Direct Loss 0.964405333884591 0 0.8687883 0.8617699 prediction 0.928810667769183 Functional Loss - PLAU ENSG00000122861 CDS Human protein_coding chr10:75675065 chr10:75675065 nonsynonymous SNV 0.072 3 21 hm5C_associated_SNPs_48041 0 0 0 0 2 PLAU chr10:75675009 3'AG 75675009 Downstream 57bp
chr10 75675065 75675065 1 + C T COAD 75675065 + 75675045 75675085 41 TTGTGAAGCTGATTTCCCACCGGGAGTGTCAGCAGCCCCAC TTGTGAAGCTGATTTCCCACTGGGAGTGTCAGCAGCCCCAC Direct Loss 0.964405333884591 0 0.8687883 0.8617699 prediction 0.928810667769183 Functional Loss - PLAU ENSG00000122861 CDS Human protein_coding chr10:75675065 chr10:75675065 nonsynonymous SNV 0.072 3 21 hm5C_associated_SNPs_48041 0 0 0 0 2 PLAU chr10:75675157 5'GT 75675157 Upstream 93bp
chr3 122103141 122103141 1 + C T rs140995238 122103141 + 122103121 122103161 41 CCTCAGCGGTCTGCGCCTGGCAGCAGGTGAGACGCCGGTCG CCTCAGCGGTCTGCGCCTGGTAGCAGGTGAGACGCCGGTCG Direct Loss 0.964395601646905 0 0.82964826 0.7390218 prediction 0.92879120329381 Functional Loss - FAM162A ENSG00000114023 CDS Human protein_coding chr3:122103141 chr3:122103141 nonsynonymous SNV 0.014 0 21 hm5C_associated_SNPs_48042 0 0 1 0 1 FAM162A chr3:122103146 5'GT 122103146 Upstream 6bp
chr17 38318390 38318390 1 + C T STAD 38318390 + 38318370 38318410 41 ATGATCTTCGAGGGCAAACTCAGGAGGAGGAAGTCAGGTAA ATGATCTTCGAGGGCAAACTTAGGAGGAGGAAGTCAGGTAA Direct Loss 0.964348372456133 0 0.91682875 0.9033669 prediction 0.928696744912265 Functional Loss - CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318390 chr17:38318390 stopgain 1.000 1 21 hm5C_associated_SNPs_48045 0 0 1 0 1 CASC3 chr17:38318406 5'GT 38318406 Upstream 17bp
chr1 228334618 228334618 1 + C T GBM 228334618 + 228334598 228334638 41 CATCGAGCATGCCGAGTTCTCGGGGAACCTGTATGGCACGA CATCGAGCATGCCGAGTTCTTGGGGAACCTGTATGGCACGA Direct Loss 0.964340224317347 0 0.9469098 0.91368175 prediction 0.928680448634695 Functional Loss - GUK1 ENSG00000143774 CDS Human protein_coding chr1:228334618 chr1:228334618 nonsynonymous SNV 0.780 3 21 hm5C_associated_SNPs_48046 0 0 1 0 2 GUK1 chr1:228334543 3'AG 228334543 Downstream 76bp
chr1 228334618 228334618 1 + C T GBM 228334618 + 228334598 228334638 41 CATCGAGCATGCCGAGTTCTCGGGGAACCTGTATGGCACGA CATCGAGCATGCCGAGTTCTTGGGGAACCTGTATGGCACGA Direct Loss 0.964340224317347 0 0.9469098 0.91368175 prediction 0.928680448634695 Functional Loss - GUK1 ENSG00000143774 CDS Human protein_coding chr1:228334618 chr1:228334618 nonsynonymous SNV 0.780 3 21 hm5C_associated_SNPs_48046 0 0 1 0 2 GUK1 chr1:228334639 5'GT 228334639 Upstream 22bp
chr12 52285057 52285057 1 + C T UCEC 52285057 + 52285037 52285077 41 TCAGGATAGAGAAGAGGAAACAGGAGGAGGAGGCCAGAATG TCAGGATAGAGAAGAGGAAATAGGAGGAGGAGGCCAGAATG Direct Loss 0.964338744771562 0 0.8923476 0.90431523 prediction 0.928677489543124 Functional Loss - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52285057 chr12:52285057 stopgain 0.818 1 21 hm5C_associated_SNPs_48047 0 0 0 1 1 ANKRD33 chr12:52284970 3'AG 52284970 Downstream 88bp
chr12 58015609 58015609 1 + C A OV 58015609 + 58015589 58015629 41 CCGGCTACCCACGCCGATCCCGGGGGAAGTCGTCTTGGTGA CCGGCTACCCACGCCGATCCAGGGGGAAGTCGTCTTGGTGA Direct Loss 0.964335552316864 0 0.942259 0.9110259 prediction 0.928671104633727 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58015609 chr12:58015609 nonsynonymous SNV 0.476 4 21 hm5C_associated_SNPs_48048 0 0 1 1 1 SLC26A10 chr12:58015625 5'GT 58015625 Upstream 17bp
chr17 48614455 48614455 1 + C A LIHC 48614455 + 48614435 48614475 41 GCGAGGACTACAGCCGCTCCCGGGGCTCCCCGTCCTCCTAC GCGAGGACTACAGCCGCTCCAGGGGCTCCCCGTCCTCCTAC Direct Loss 0.964323265297151 0 0.9492041 0.9036945 prediction 0.928646530594301 Functional Loss - EPN3 ENSG00000049283 CDS Human protein_coding chr17:48614455 chr17:48614455 synonymous SNV . 0 21 hm5C_associated_SNPs_48049 0 0 0 0 1 EPN3 chr17:48614479 5'GT 48614479 Upstream 25bp
chr2 10282461 10282461 1 + C T UCEC 10282461 + 10282441 10282481 41 TCTGCGTGTCAGGTGTTACTCGGGGTGCGCCAGTGGAAGCG TCTGCGTGTCAGGTGTTACTTGGGGTGCGCCAGTGGAAGCG Direct Loss 0.964311191076013 0 0.9469559 0.9204936 prediction 0.928622382152027 Functional Loss - C2orf48 ENSG00000163009 CDS Human lincRNA chr2:10282461 chr2:10282461 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_48054 0 0 1 0 2 C2orf48 chr2:10282382 3'AG 10282382 Downstream 80bp
chr2 10282461 10282461 1 + C T UCEC 10282461 + 10282441 10282481 41 TCTGCGTGTCAGGTGTTACTCGGGGTGCGCCAGTGGAAGCG TCTGCGTGTCAGGTGTTACTTGGGGTGCGCCAGTGGAAGCG Direct Loss 0.964311191076013 0 0.9469559 0.9204936 prediction 0.928622382152027 Functional Loss - C2orf48 ENSG00000163009 CDS Human lincRNA chr2:10282461 chr2:10282461 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_48054 0 0 1 0 2 C2orf48 chr2:10282502 5'GT 10282502 Upstream 42bp
chr9 129455497 129455497 1 + C T COAD 129455497 + 129455477 129455517 41 AGCAAGGGCAGCGGGGATGACGGGAAGGACCCGCGGAGGCC AGCAAGGGCAGCGGGGATGATGGGAAGGACCCGCGGAGGCC Direct Loss 0.964247887131016 0 0.8632425 0.83196867 prediction 0.928495774262031 Functional Loss - LMX1B ENSG00000136944 CDS Human protein_coding chr9:129455497 chr9:129455497 synonymous SNV . 0 21 hm5C_associated_SNPs_48057 0 0 0 0 1 LMX1B chr9:129455421 3'AG 129455421 Downstream 77bp
chr5 140019433 140019433 1 + C A rs558148339 140019433 + 140019413 140019453 41 GCTGCGATCCTCGGGGAAACCGAGGTGAGGGGGCAAGGTAG GCTGCGATCCTCGGGGAAACAGAGGTGAGGGGGCAAGGTAG Direct Loss 0.964220610597229 0 0.91104186 0.9027761 prediction 0.928441221194457 Functional Loss - TMCO6 ENSG00000113119 CDS Human protein_coding chr5:140019433 chr5:140019433 synonymous SNV . 0 21 hm5C_associated_SNPs_48058 0 0 1 0 1 TMCO6 chr5:140019436 5'GT 140019436 Upstream 4bp
chr16 67916623 67916623 1 + C T COAD 67916623 + 67916603 67916643 41 ACATGAAGAGCCGGAAGGCACGGGAACAGGAGGCCAGGGAG ACATGAAGAGCCGGAAGGCATGGGAACAGGAGGCCAGGGAG Direct Loss 0.964207532268031 0 0.89348125 0.81460357 prediction 0.928415064536062 Functional Loss - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67916623 chr16:67916623 nonsynonymous SNV 0.961 3 21 hm5C_associated_SNPs_48060 0 0 1 1 1 EDC4 chr16:67916582 3'AG 67916582 Downstream 42bp
chr6 26463541 26463541 1 + C G BRCA 26463541 + 26463521 26463561 41 CATCCGGCTGGAGTGCATATCTAGAGGGTGGTACCCAAAGC CATCCGGCTGGAGTGCATATGTAGAGGGTGGTACCCAAAGC Direct Loss 0.964190408529441 0 0.4486128 0.45199186 prediction 0.928380817058882 Functional Loss - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26463541 chr6:26463541 nonsynonymous SNV 0.379 5 21 hm5C_associated_SNPs_48062 0 0 1 0 1 BTN2A1 chr6:26463472 3'AG 26463472 Downstream 70bp
chr17 33482447 33482447 1 + C T COAD 33482447 + 33482427 33482467 41 CCTTGTCTGGGGAGGACAAGCGGGAGCATCGAGGGAAGGAG CCTTGTCTGGGGAGGACAAGTGGGAGCATCGAGGGAAGGAG Direct Loss 0.964064076969998 0 0.92631763 0.91583216 prediction 0.928128153939996 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33482447 chr17:33482447 nonsynonymous SNV 0.458 2 21 hm5C_associated_SNPs_48065 0 0 0 0 1 UNC45B chr17:33482483 5'GT 33482483 Upstream 37bp
chr16 30012816 30012816 1 + C T COAD 30012816 + 30012796 30012836 41 CCAGTCCCCTGAGGCCCAAGCGGGAGAAACGGCCCCGCCTG CCAGTCCCCTGAGGCCCAAGTGGGAGAAACGGCCCCGCCTG Direct Loss 0.964063323937881 0 0.9578383 0.93564665 prediction 0.928126647875762 Functional Loss - INO80E ENSG00000169592 CDS Human protein_coding chr16:30012816 chr16:30012816 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_48066 0 0 1 0 2 INO80E chr16:30012735 3'AG 30012735 Downstream 82bp
chr16 30012816 30012816 1 + C T COAD 30012816 + 30012796 30012836 41 CCAGTCCCCTGAGGCCCAAGCGGGAGAAACGGCCCCGCCTG CCAGTCCCCTGAGGCCCAAGTGGGAGAAACGGCCCCGCCTG Direct Loss 0.964063323937881 0 0.9578383 0.93564665 prediction 0.928126647875762 Functional Loss - INO80E ENSG00000169592 CDS Human protein_coding chr16:30012816 chr16:30012816 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_48066 0 0 1 0 2 INO80E chr16:30012851 5'GT 30012851 Upstream 36bp
chr1 205561360 205561360 1 + C T BLCA 205561360 + 205561340 205561380 41 GCAAGCCTGGGCCTGTTTCTCAGCAGCACCTTCCCCAGCAT GCAAGCCTGGGCCTGTTTCTTAGCAGCACCTTCCCCAGCAT Direct Loss 0.964026473446559 0 0.90852034 0.85507905 prediction 0.928052946893118 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561360 chr1:205561360 synonymous SNV . 0 21 hm5C_associated_SNPs_48068 0 0 0 2 2 MFSD4A chr1:205561268 3'AG 205561268 Downstream 93bp
chr1 205561360 205561360 1 + C T BLCA 205561360 + 205561340 205561380 41 GCAAGCCTGGGCCTGTTTCTCAGCAGCACCTTCCCCAGCAT GCAAGCCTGGGCCTGTTTCTTAGCAGCACCTTCCCCAGCAT Direct Loss 0.964026473446559 0 0.90852034 0.85507905 prediction 0.928052946893118 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561360 chr1:205561360 synonymous SNV . 0 21 hm5C_associated_SNPs_48068 0 0 0 2 2 MFSD4A chr1:205561415 5'GT 205561415 Upstream 56bp
chr7 31009493 31009493 1 + C T UCEC 31009493 + 31009473 31009513 41 GCCTCCCAGGGGCTGTGAAACGGGATTGTACTATCACTGGC GCCTCCCAGGGGCTGTGAAATGGGATTGTACTATCACTGGC Direct Loss 0.964020344443959 0 0.89462566 0.41417477 prediction 0.928040688887917 Functional Loss - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31009493 chr7:31009493 nonsynonymous SNV 0.137 3 21 hm5C_associated_SNPs_48070 0 0 0 0 2 GHRHR chr7:31009482 3'AG 31009482 Downstream 12bp
chr7 31009493 31009493 1 + C T UCEC 31009493 + 31009473 31009513 41 GCCTCCCAGGGGCTGTGAAACGGGATTGTACTATCACTGGC GCCTCCCAGGGGCTGTGAAATGGGATTGTACTATCACTGGC Direct Loss 0.964020344443959 0 0.89462566 0.41417477 prediction 0.928040688887917 Functional Loss - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31009493 chr7:31009493 nonsynonymous SNV 0.137 3 21 hm5C_associated_SNPs_48070 0 0 0 0 2 GHRHR chr7:31009579 5'GT 31009579 Upstream 87bp
chr12 4385287 4385287 1 + C G CESC 4385287 + 4385267 4385307 41 CTGCAACTCCTGGGTGCTGTCTGCATGTTCCTGGCCTCCAA CTGCAACTCCTGGGTGCTGTGTGCATGTTCCTGGCCTCCAA Direct Loss 0.963986072283189 0 0.5167302 0.14271766 prediction 0.927972144566379 Functional Loss - CCND2 ENSG00000118971 CDS Human protein_coding chr12:4385287 chr12:4385287 synonymous SNV . 0 21 hm5C_associated_SNPs_48073 0 0 0 0 1 CCND2 chr12:4385386 5'GT 4385386 Upstream 100bp
chrX 76709692 76709692 1 + C T SKCM 76709692 + 76709672 76709712 41 CTGTGGGGCTGATCAGCATCCGGGGAGTGGACTCTGGCCTG CTGTGGGGCTGATCAGCATCTGGGGAGTGGACTCTGGCCTG Direct Loss 0.963980249098876 0 0.9337157 0.91641986 prediction 0.927960498197751 Functional Loss - FGF16 ENSG00000196468 CDS Human protein_coding chrX:76709692 chrX:76709692 unknown 0.994 1 21 hm5C_associated_SNPs_48075 0 0 0 0 1 FGF16 chrX:76709751 5'GT 76709751 Upstream 60bp
chr19 49102469 49102469 1 + C A rs61748775 49102469 + 49102449 49102489 41 GTGCCTACCGCAAGCAGATGCGGGGGATGCCGACCTTCCCC GTGCCTACCGCAAGCAGATGAGGGGGATGCCGACCTTCCCC Direct Loss 0.963970465275426 0 0.9527432 0.9457747 prediction 0.927940930550851 Functional Loss - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49102469 chr19:49102469 synonymous SNV . 0 21 hm5C_associated_SNPs_48077 0 0 0 0 1 SULT2B1 chr19:49102392 3'AG 49102392 Downstream 78bp
chr21 47361602 47361602 1 + C T COAD 47361602 + 47361582 47361622 41 AGGCTGACGTCCGAGGTCACCGGGATGGGCACGCTGTAATC AGGCTGACGTCCGAGGTCACTGGGATGGGCACGCTGTAATC Direct Loss 0.963903404821407 0 0.92151725 0.9162827 prediction 0.927806809642814 Functional Loss - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47361602 chr21:47361602 synonymous SNV . 0 21 hm5C_associated_SNPs_48081 0 0 0 0 1 PCBP3 chr21:47361584 3'AG 47361584 Downstream 19bp
chr4 78808420 78808420 1 + C T DLBC 78808420 + 78808400 78808440 41 AGAAAATGGAGCTGCATTTGCAGGAGGCACTAGTCTGATAC AGAAAATGGAGCTGCATTTGTAGGAGGCACTAGTCTGATAC Direct Loss 0.963830370849588 0 0.8764535 0.74069995 prediction 0.927660741699176 Functional Loss - MRPL1 ENSG00000169288 CDS Human protein_coding chr4:78808420 chr4:78808420 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_48083 0 0 1 0 2 MRPL1 chr4:78808374 3'AG 78808374 Downstream 47bp
chr4 78808420 78808420 1 + C T DLBC 78808420 + 78808400 78808440 41 AGAAAATGGAGCTGCATTTGCAGGAGGCACTAGTCTGATAC AGAAAATGGAGCTGCATTTGTAGGAGGCACTAGTCTGATAC Direct Loss 0.963830370849588 0 0.8764535 0.74069995 prediction 0.927660741699176 Functional Loss - MRPL1 ENSG00000169288 CDS Human protein_coding chr4:78808420 chr4:78808420 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_48083 0 0 1 0 2 MRPL1 chr4:78808445 5'GT 78808445 Upstream 26bp
chr19 45206715 45206715 1 + C T GBM 45206715 + 45206695 45206735 41 GCTGGTCGTCCATGGGCTTTCGGGGGAACTGCTCGCCTACA GCTGGTCGTCCATGGGCTTTTGGGGGAACTGCTCGCCTACA Direct Loss 0.963827454043201 0 0.9692088 0.94665897 prediction 0.927654908086402 Functional Loss - CEACAM16 ENSG00000213892 CDS Human protein_coding chr19:45206715 chr19:45206715 nonsynonymous SNV 0.637 0 21 hm5C_associated_SNPs_48084 0 0 0 0 1 CEACAM16 chr19:45206619 3'AG 45206619 Downstream 97bp
chr9 133346226 133346226 1 + C T rs10901072 133346226 + 133346206 133346246 41 GTCTCTTTCCTGCAGCAACACGGGATTCCCATCCCGGTCAC GTCTCTTTCCTGCAGCAACATGGGATTCCCATCCCGGTCAC Direct Loss 0.963816161378662 0 0.88999665 0.4636229 prediction 0.927632322757325 Functional Loss - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133346226 chr9:133346226 synonymous SNV . 0 21 hm5C_associated_SNPs_48085 2 0 1 0 2 ASS1 chr9:133346221 3'AG 133346221 Downstream 6bp
chr9 133346226 133346226 1 + C T rs10901072 133346226 + 133346206 133346246 41 GTCTCTTTCCTGCAGCAACACGGGATTCCCATCCCGGTCAC GTCTCTTTCCTGCAGCAACATGGGATTCCCATCCCGGTCAC Direct Loss 0.963816161378662 0 0.88999665 0.4636229 prediction 0.927632322757325 Functional Loss - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133346226 chr9:133346226 synonymous SNV . 0 21 hm5C_associated_SNPs_48085 2 0 1 0 2 ASS1 chr9:133346291 5'GT 133346291 Upstream 66bp
chr14 24525547 24525547 1 + C T COAD 24525547 + 24525527 24525567 41 GCCGGGGTGTTTGGGGAGAACGGGAGCTGTGTGCTGCATGC GCCGGGGTGTTTGGGGAGAATGGGAGCTGTGTGCTGCATGC Direct Loss 0.96378855158823 0 0.91380215 0.9112382 prediction 0.92757710317646 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24525547 chr14:24525547 synonymous SNV . 0 21 hm5C_associated_SNPs_48088 0 0 0 0 1 CARMIL3 chr14:24525508 3'AG 24525508 Downstream 40bp
chr17 4701595 4701595 1 + C T UCEC 4701595 + 4701575 4701615 41 CTCTCGCTTTGGCCATGGAGCGGGATGGCTCCAGTGGAGGA CTCTCGCTTTGGCCATGGAGTGGGATGGCTCCAGTGGAGGA Direct Loss 0.963777676845898 0 0.8924098 0.5317983 prediction 0.927555353691796 Functional Loss - PSMB6 ENSG00000142507 CDS Human protein_coding chr17:4701595 chr17:4701595 nonsynonymous SNV 0.992 3 21 hm5C_associated_SNPs_48090 0 0 1 0 2 PSMB6 chr17:4701555 3'AG 4701555 Downstream 41bp
chr17 4701595 4701595 1 + C T UCEC 4701595 + 4701575 4701615 41 CTCTCGCTTTGGCCATGGAGCGGGATGGCTCCAGTGGAGGA CTCTCGCTTTGGCCATGGAGTGGGATGGCTCCAGTGGAGGA Direct Loss 0.963777676845898 0 0.8924098 0.5317983 prediction 0.927555353691796 Functional Loss - PSMB6 ENSG00000142507 CDS Human protein_coding chr17:4701595 chr17:4701595 nonsynonymous SNV 0.992 3 21 hm5C_associated_SNPs_48090 0 0 1 0 2 PSMB6 chr17:4701575 3'AG 4701575 Downstream 21bp
chr1 99470051 99470051 1 - G A COAD 99470051 - 99470031 99470071 41 CCCTACCCGGGCCCGGAGGACAGCAGCGCCGTGCCCCCCGT CCCTACCCGGGCCCGGAGGATAGCAGCGCCGTGCCCCCCGT Direct Loss 0.963730385542055 0 0.82906103 0.89322126 prediction 0.92746077108411 Functional Loss - PLPPR5 ENSG00000117598 CDS Human protein_coding chr1:99470051 chr1:99470051 synonymous SNV . 0 21 hm5C_associated_SNPs_48091 0 0 0 0 1 PLPPR5 chr1:99469991 5'GT 99469991 Upstream 61bp
chr19 36038288 36038288 1 + C T PRAD 36038288 + 36038268 36038308 41 ACTGGCCCGAGCAGTGGTAACGGGGCTGCTGGCCCTCAGCA ACTGGCCCGAGCAGTGGTAATGGGGCTGCTGGCCCTCAGCA Direct Loss 0.963706837598271 0 0.93211854 0.91059625 prediction 0.927413675196542 Functional Loss - TMEM147 ENSG00000105677 CDS Human protein_coding chr19:36038288 chr19:36038288 nonsynonymous SNV 0.883 4 21 hm5C_associated_SNPs_48093 0 0 1 0 1 TMEM147 chr19:36038226 3'AG 36038226 Downstream 63bp
chr12 57998636 57998636 1 + C T rs542850386 57998636 + 57998616 57998656 41 ACCGGCAATGGCGGCGCTGACGAGAGGTAGGTGAGCCCGGC ACCGGCAATGGCGGCGCTGATGAGAGGTAGGTGAGCCCGGC Direct Loss 0.963671979390417 0 0.9067304 0.8688042 prediction 0.927343958780835 Functional Loss - DTX3 ENSG00000178498 UTR5 Human protein_coding chr12:57998636 chr12:57998636 . . 0 21 hm5C_associated_SNPs_48095 0 0 1 0 1 DTX3 chr12:57998641 5'GT 57998641 Upstream 6bp
chr1 36396889 36396889 1 + C T rs540604358 36396889 + 36396869 36396909 41 GCTTTCGGAGTGCGGTTGCTCAGGGGAAGCCGTCGCCGCCC GCTTTCGGAGTGCGGTTGCTTAGGGGAAGCCGTCGCCGCCC Direct Loss 0.963647588514866 0 0.9619298 0.93707573 prediction 0.927295177029732 Functional Loss - AGO3 ENSG00000126070 UTR5 Human protein_coding chr1:36396889 chr1:36396889 . . 0 21 hm5C_associated_SNPs_48097 0 0 1 0 1 AGO3 chr1:36396830 3'AG 36396830 Downstream 60bp
chr20 61870912 61870912 1 + C T SKCM 61870912 + 61870892 61870932 41 GGCCTGCAGCTGTGCCCCATCTGCAGAGCCCCCGTCCGCAG GGCCTGCAGCTGTGCCCCATTTGCAGAGCCCCCGTCCGCAG Direct Loss 0.963605420023297 0 0.22128236 0.16454816 prediction 0.927210840046593 Functional Loss - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61870912 chr20:61870912 synonymous SNV . 0 21 hm5C_associated_SNPs_48100 0 0 1 0 1 BIRC7 chr20:61870962 5'GT 61870962 Upstream 51bp
chr3 183887875 183887875 1 + C T COAD 183887875 + 183887855 183887895 41 ACTGGCCCCTTTGCCGCACCCGGGGGCCGCCCCTTGGCCCA ACTGGCCCCTTTGCCGCACCTGGGGGCCGCCCCTTGGCCCA Direct Loss 0.96360153682201 0 0.95906967 0.93752337 prediction 0.92720307364402 Functional Loss - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183887875 chr3:183887875 nonsynonymous SNV 0.934 4 21 hm5C_associated_SNPs_48101 0 0 1 0 1 DVL3 chr3:183887794 3'AG 183887794 Downstream 82bp
chr10 13214675 13214675 1 + C T SKCM 13214675 + 13214655 13214695 41 AGAGGAGAGTTCAGAGAATTCAGGAGTCAACATGCTTTTCT AGAGGAGAGTTCAGAGAATTTAGGAGTCAACATGCTTTTCT Direct Loss 0.963596696464195 0 0.8880956 0.76612175 prediction 0.927193392928389 Functional Loss - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13214675 chr10:13214675 stopgain 0.970 0 21 hm5C_associated_SNPs_48103 0 0 1 0 3 MCM10 chr10:13214625 3'AG 13214625 Downstream 51bp
chr10 13214675 13214675 1 + C T SKCM 13214675 + 13214655 13214695 41 AGAGGAGAGTTCAGAGAATTCAGGAGTCAACATGCTTTTCT AGAGGAGAGTTCAGAGAATTTAGGAGTCAACATGCTTTTCT Direct Loss 0.963596696464195 0 0.8880956 0.76612175 prediction 0.927193392928389 Functional Loss - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13214675 chr10:13214675 stopgain 0.970 0 21 hm5C_associated_SNPs_48103 0 0 1 0 3 MCM10 chr10:13214628 3'AG 13214628 Downstream 48bp
chr10 13214675 13214675 1 + C T SKCM 13214675 + 13214655 13214695 41 AGAGGAGAGTTCAGAGAATTCAGGAGTCAACATGCTTTTCT AGAGGAGAGTTCAGAGAATTTAGGAGTCAACATGCTTTTCT Direct Loss 0.963596696464195 0 0.8880956 0.76612175 prediction 0.927193392928389 Functional Loss - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13214675 chr10:13214675 stopgain 0.970 0 21 hm5C_associated_SNPs_48103 0 0 1 0 3 MCM10 chr10:13214765 5'GT 13214765 Upstream 91bp
chr5 177022271 177022271 1 + C T PRAD 177022271 + 177022251 177022291 41 CTTATATTCCCCTGCAGTGGCGAGAGGAGCGCTTCCGGCAG CTTATATTCCCCTGCAGTGGTGAGAGGAGCGCTTCCGGCAG Direct Loss 0.963577385374666 0 0.86600363 0.8411165 prediction 0.927154770749333 Functional Loss - TMED9 ENSG00000184840 CDS Human protein_coding chr5:177022271 chr5:177022271 stopgain 1.000 1 21 hm5C_associated_SNPs_48107 0 0 1 0 1 TMED9 chr5:177022268 3'AG 177022268 Downstream 4bp
chr20 43160617 43160617 1 + C A rs73611738 43160617 + 43160597 43160637 41 ACGGAGAGGCGGCGAGACCGCAGGTGAGCAGGAGCCGGGCG ACGGAGAGGCGGCGAGACCGAAGGTGAGCAGGAGCCGGGCG Direct Loss 0.963557435044371 0 0.86551845 0.80082464 prediction 0.927114870088741 Functional Loss - PKIG ENSG00000168734 UTR5 Human protein_coding chr20:43160617 chr20:43160617 . . 0 21 hm5C_associated_SNPs_48108 0 0 1 0 1 PKIG chr20:43160619 5'GT 43160619 Upstream 3bp
chr19 38881095 38881095 1 + C T rs370701407 38881095 + 38881075 38881115 41 CAGGGGCACTACGTCATCCACGGGGAACGCCTCCGGGACCA CAGGGGCACTACGTCATCCATGGGGAACGCCTCCGGGACCA Direct Loss 0.963519289336188 0 0.9198582 0.89387965 prediction 0.927038578672376 Functional Loss - SPRED3 ENSG00000188766 CDS Human protein_coding chr19:38881095 chr19:38881095 synonymous SNV . 0 21 hm5C_associated_SNPs_48111 0 0 0 0 1 SPRED3 chr19:38881119 5'GT 38881119 Upstream 25bp
chr9 131583051 131583051 1 + C A COAD 131583051 + 131583031 131583071 41 ACCAGAATGCCTGGAACAACCTGGAGAAATATAGCCGCAGC ACCAGAATGCCTGGAACAACATGGAGAAATATAGCCGCAGC Direct Loss 0.963481524562825 0 0.66779786 0.69784397 prediction 0.926963049125651 Functional Loss - ENDOG ENSG00000167136 CDS Human protein_coding chr9:131583051 chr9:131583051 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_48113 0 0 0 0 2 ENDOG chr9:131583018 3'AG 131583018 Downstream 34bp
chr9 131583051 131583051 1 + C A COAD 131583051 + 131583031 131583071 41 ACCAGAATGCCTGGAACAACCTGGAGAAATATAGCCGCAGC ACCAGAATGCCTGGAACAACATGGAGAAATATAGCCGCAGC Direct Loss 0.963481524562825 0 0.66779786 0.69784397 prediction 0.926963049125651 Functional Loss - ENDOG ENSG00000167136 CDS Human protein_coding chr9:131583051 chr9:131583051 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_48113 0 0 0 0 2 ENDOG chr9:131583127 5'GT 131583127 Upstream 77bp
chr4 53728800 53728800 1 + C T CESC 53728800 + 53728780 53728820 41 ATCGCCGTGGTGGGCGCCAGCGGCGTGGGCAAGACCGGTGA ATCGCCGTGGTGGGCGCCAGTGGCGTGGGCAAGACCGGTGA Direct Loss 0.963476248553421 0 0.9044983 0.8770813 prediction 0.926952497106842 Functional Loss - RASL11B ENSG00000128045 CDS Human protein_coding chr4:53728800 chr4:53728800 synonymous SNV . 0 21 hm5C_associated_SNPs_48114 0 0 0 0 1 RASL11B chr4:53728816 5'GT 53728816 Upstream 17bp
chr14 24607692 24607692 1 + C T BLCA 24607692 + 24607672 24607712 41 GCTTCCCACAGGGTGATTATCGGCAGCTGGTGCACGAGCTG GCTTCCCACAGGGTGATTATTGGCAGCTGGTGCACGAGCTG Direct Loss 0.963460889693382 0 0.92055404 0.87689626 prediction 0.926921779386763 Functional Loss - PSME1 ENSG00000092010 CDS Human protein_coding chr14:24607692 chr14:24607692 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_48115 0 0 1 0 1 PSME1 chr14:24607769 5'GT 24607769 Upstream 78bp
chr1 28176693 28176693 1 + C T THCA 28176693 + 28176673 28176713 41 GCCTTCAGCGGAGGACTCTACGGGGGCCTGCCCCCCACACA GCCTTCAGCGGAGGACTCTATGGGGGCCTGCCCCCCACACA Direct Loss 0.963444495618368 0 0.9248425 0.91105455 prediction 0.926888991236735 Functional Loss - PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28176693 chr1:28176693 synonymous SNV . 0 21 hm5C_associated_SNPs_48117 0 0 1 0 1 PPP1R8 chr1:28176604 3'AG 28176604 Downstream 90bp
chr20 31671642 31671642 1 + C T UCEC 31671642 + 31671622 31671662 41 GGTGTCCTGGGCGTGCTCGGCGAGGGTGGCATCCTCAGCAC GGTGTCCTGGGCGTGCTCGGTGAGGGTGGCATCCTCAGCAC Direct Loss 0.963397201205733 0 0.902794 0.87037957 prediction 0.926794402411467 Functional Loss - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31671642 chr20:31671642 synonymous SNV . 0 21 hm5C_associated_SNPs_48121 0 0 0 0 1 BPIFB4 chr20:31671680 5'GT 31671680 Upstream 39bp
chr6 159086557 159086557 1 + C T ACC 159086557 + 159086537 159086577 41 TGCACCGGGGCGCCGTGTGCCGGGGCTGCAGCCACCGCGTG TGCACCGGGGCGCCGTGTGCTGGGGCTGCAGCCACCGCGTG Direct Loss 0.963377101494287 0 0.9149418 0.84634036 prediction 0.926754202988574 Functional Loss - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159086557 chr6:159086557 nonsynonymous SNV 0.945 2 21 hm5C_associated_SNPs_48122 0 0 0 0 1 SYTL3 chr6:159086645 5'GT 159086645 Upstream 89bp
chr19 45515237 45515237 1 + C T COAD 45515237 + 45515217 45515257 41 GAGAACGGCTTCGGCCTGGACGGGGGACAGCCGGGCCCGGG GAGAACGGCTTCGGCCTGGATGGGGGACAGCCGGGCCCGGG Direct Loss 0.963333364266452 0 0.90330786 0.88007015 prediction 0.926666728532903 Functional Loss - RELB ENSG00000104856 CDS Human protein_coding chr19:45515237 chr19:45515237 synonymous SNV . 0 21 hm5C_associated_SNPs_48125 0 0 1 0 1 RELB chr19:45515194 3'AG 45515194 Downstream 44bp
chr7 100866997 100866997 1 + C T BLCA 100866997 + 100866977 100867017 41 TAACTACCTGACGGCCTGTGCGGGACCCCCATCGCGGCCCC TAACTACCTGACGGCCTGTGTGGGACCCCCATCGCGGCCCC Direct Loss 0.963281330407554 0 0.8811275 0.8002255 prediction 0.926562660815107 Functional Loss - ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100866997 chr7:100866997 nonsynonymous SNV 0.646 1 21 hm5C_associated_SNPs_48127 0 0 1 0 1 ZNHIT1 chr7:100866954 3'AG 100866954 Downstream 44bp
chr8 26240990 26240990 1 + C A rs535612138 26240990 + 26240970 26241010 41 GGCTCGCGGTCCGGGAGCGGCGCGGGTAGCGCGGATCCCCC GGCTCGCGGTCCGGGAGCGGAGCGGGTAGCGCGGATCCCCC Direct Loss 0.963278219033657 0 0.89022386 0.9114891 prediction 0.926556438067314 Functional Loss - BNIP3L ENSG00000104765 UTR5 Human protein_coding chr8:26240990 chr8:26240990 . . 0 21 hm5C_associated_SNPs_48128 0 0 0 0 1 BNIP3L chr8:26240994 5'GT 26240994 Upstream 5bp
chr1 215256769 215256769 1 + C A COAD 215256769 + 215256749 215256789 41 GGAGAGACCCGGCTATAGAGCAGGAGGTGAGACCCCCCCTC GGAGAGACCCGGCTATAGAGAAGGAGGTGAGACCCCCCCTC Direct Loss 0.963198492516942 0 0.9177921 0.8934485 prediction 0.926396985033884 Functional Loss - KCNK2 ENSG00000082482 CDS Human protein_coding chr1:215256769 chr1:215256769 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_48135 0 0 0 0 1 KCNK2 chr1:215256774 5'GT 215256774 Upstream 6bp
chr17 46628473 46628473 1 - G A UCEC 46628473 - 46628453 46628493 41 GGCAGCGGGGGCGGTGGCGGCGGCGGCGGGGGAGGGGACAA GGCAGCGGGGGCGGTGGCGGTGGCGGCGGGGGAGGGGACAA Direct Loss 0.963193185443015 0 0.92899096 0.9166753 prediction 0.926386370886031 Functional Loss - HOXB3 ENSG00000120093 CDS Human protein_coding chr17:46628473 chr17:46628473 synonymous SNV . 0 21 hm5C_associated_SNPs_48136 0 0 1 0 1 HOXB3 chr17:46628543 3'AG 46628543 Downstream 71bp
chr19 16296555 16296555 1 + C T CESC 16296555 + 16296535 16296575 41 ACCCCGGCCCAGGCGGCCTTCGAGAAAATGCAGGAGAAGCG ACCCCGGCCCAGGCGGCCTTTGAGAAAATGCAGGAGAAGCG Direct Loss 0.963184810862962 0 0.8249736 0.6003788 prediction 0.926369621725924 Functional Loss - FAM32A ENSG00000105058 CDS Human protein_coding chr19:16296555 chr19:16296555 synonymous SNV . 0 21 hm5C_associated_SNPs_48138 0 0 1 0 1 FAM32A chr19:16296576 5'GT 16296576 Upstream 22bp
chr2 220100553 220100553 1 + C A rs150402081 220100553 + 220100533 220100573 41 AGGAGCAGGAGGAGCGTGAACGAGAAGAGCAGCGGCGATTT AGGAGCAGGAGGAGCGTGAAAGAGAAGAGCAGCGGCGATTT Direct Loss 0.963180579326849 0 0.8682332 0.6325119 prediction 0.926361158653698 Functional Loss - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220100553 chr2:220100553 synonymous SNV . 0 21 hm5C_associated_SNPs_48139 0 0 1 0 1 ANKZF1 chr2:220100597 5'GT 220100597 Upstream 45bp
chr7 111846811 111846811 1 + C A LIHC 111846811 + 111846791 111846831 41 AGGGGGCTGTCGCCCGAATGCAGGAAGACCGTGATGGGAGC AGGGGGCTGTCGCCCGAATGAAGGAAGACCGTGATGGGAGC Direct Loss 0.963155490975416 0 0.69206 0.64778763 prediction 0.926310981950832 Functional Loss - ZNF277 ENSG00000198839 CDS Human protein_coding chr7:111846811 chr7:111846811 nonsynonymous SNV 0.009 0 21 hm5C_associated_SNPs_48142 0 0 1 0 1 ZNF277 chr7:111846862 5'GT 111846862 Upstream 52bp
chr2 136499512 136499512 1 + C T LUSC 136499512 + 136499492 136499532 41 AGGGAGCGATGCTGTGGTTCCAGGGCGCCATTCCGGCCGCC AGGGAGCGATGCTGTGGTTCTAGGGCGCCATTCCGGCCGCC Direct Loss 0.963140312912855 0 0.9151069 0.91033137 prediction 0.926280625825709 Functional Loss - UBXN4 ENSG00000144224 CDS Human protein_coding chr2:136499512 chr2:136499512 stopgain 0.998 0 21 hm5C_associated_SNPs_48143 0 0 1 0 1 UBXN4 chr2:136499581 5'GT 136499581 Upstream 70bp
chr1 89990533 89990533 1 + C A rs116042160 89990533 + 89990513 89990553 41 CCTGCCCGCCCGGAGCGGCCCAGGAGCACGCCGCGGGGAGC CCTGCCCGCCCGGAGCGGCCAAGGAGCACGCCGCGGGGAGC Direct Loss 0.963043580170405 0 0.9087002 0.8952807 prediction 0.926087160340811 Functional Loss - LRRC8B ENSG00000197147 UTR5 Human protein_coding chr1:89990533 chr1:89990533 . . 0 21 hm5C_associated_SNPs_48150 0 0 1 0 1 LRRC8B chr1:89990581 5'GT 89990581 Upstream 49bp
chr11 47282934 47282934 1 + C T SKCM 47282934 + 47282914 47282954 41 CCGGAACAACTGGGCATGATCGAGAAGCTCGTCGCTGCCCA CCGGAACAACTGGGCATGATTGAGAAGCTCGTCGCTGCCCA Direct Loss 0.963017317038346 0 0.90020525 0.5279445 prediction 0.926034634076692 Functional Loss - NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47282934 chr11:47282934 synonymous SNV . 0 21 hm5C_associated_SNPs_48152 0 0 0 0 1 NR1H3 chr11:47283000 5'GT 47283000 Upstream 67bp
chr7 142983078 142983078 1 + C A LUSC 142983078 + 142983058 142983098 41 CAATGCACTTACTGGGGAGACTGGAGAAGCCGCTTCTCCTC CAATGCACTTACTGGGGAGAATGGAGAAGCCGCTTCTCCTC Direct Loss 0.962978181847924 0 0.7951233 0.7481849 prediction 0.925956363695848 Functional Loss - TMEM139 ENSG00000178826 CDS Human antisense chr7:142983078 chr7:142983078 nonsynonymous SNV 0.895 3 21 hm5C_associated_SNPs_48154 0 0 0 0 1 LOC105375545 chr7:142983034 3'AG 142983034 Downstream 45bp
chr1 17607199 17607199 1 + C T rs140482516 17607199 + 17607179 17607219 41 GGAACCGTGAGGTGCTGAAGCGGGAGCTGGGCCTGGCAGAG GGAACCGTGAGGTGCTGAAGTGGGAGCTGGGCCTGGCAGAG Direct Loss 0.962977940163812 0 0.8960041 0.78414243 prediction 0.925955880327625 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17607199 chr1:17607199 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_48155 0 0 0 0 2 PADI3 chr1:17607166 3'AG 17607166 Downstream 34bp
chr1 17607199 17607199 1 + C T rs140482516 17607199 + 17607179 17607219 41 GGAACCGTGAGGTGCTGAAGCGGGAGCTGGGCCTGGCAGAG GGAACCGTGAGGTGCTGAAGTGGGAGCTGGGCCTGGCAGAG Direct Loss 0.962977940163812 0 0.8960041 0.78414243 prediction 0.925955880327625 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17607199 chr1:17607199 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_48155 0 0 0 0 2 PADI3 chr1:17607291 5'GT 17607291 Upstream 93bp
chr9 131847514 131847514 1 + C T UCEC 131847514 + 131847494 131847534 41 ACAGCAGTGGGCACCAAGTACGGGATGCCCTCCAGCCATTC ACAGCAGTGGGCACCAAGTATGGGATGCCCTCCAGCCATTC Direct Loss 0.962928514218697 0 0.91022825 0.8845361 prediction 0.925857028437394 Functional Loss - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131847514 chr9:131847514 synonymous SNV . 0 21 hm5C_associated_SNPs_48160 0 0 0 1 2 DOLPP1 chr9:131847486 3'AG 131847486 Downstream 29bp
chr9 131847514 131847514 1 + C T UCEC 131847514 + 131847494 131847534 41 ACAGCAGTGGGCACCAAGTACGGGATGCCCTCCAGCCATTC ACAGCAGTGGGCACCAAGTATGGGATGCCCTCCAGCCATTC Direct Loss 0.962928514218697 0 0.91022825 0.8845361 prediction 0.925857028437394 Functional Loss - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131847514 chr9:131847514 synonymous SNV . 0 21 hm5C_associated_SNPs_48160 0 0 0 1 2 DOLPP1 chr9:131847585 5'GT 131847585 Upstream 72bp
chr19 16980352 16980352 1 + C T SKCM 16980352 + 16980332 16980372 41 TGTACGAGGACCGGCAGATCCTGGAGGACGCAGCAGCGCTC TGTACGAGGACCGGCAGATCTTGGAGGACGCAGCAGCGCTC Direct Loss 0.962890271403224 0 0.92711747 0.9381875 prediction 0.925780542806448 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16980352 chr19:16980352 synonymous SNV . 0 21 hm5C_associated_SNPs_48162 0 0 1 0 1 SIN3B chr19:16980271 3'AG 16980271 Downstream 82bp
chr15 68099074 68099074 1 + C G rs187760642 68099074 + 68099054 68099094 41 TGGAGGAGAGGCGGAGCCAGCAGGGGCCCCCGTGAGGCTGC TGGAGGAGAGGCGGAGCCAGGAGGGGCCCCCGTGAGGCTGC Direct Loss 0.962831057845601 0 0.92198837 0.9000977 prediction 0.925662115691202 Functional Loss - MAP2K5 ENSG00000137764 CDS Human protein_coding chr15:68099074 chr15:68099074 nonsynonymous SNV 0.984 0 21 hm5C_associated_SNPs_48167 0 0 1 0 1 MAP2K5 chr15:68098984 3'AG 68098984 Downstream 91bp
chr1 90098783 90098783 1 + C G rs545116633 90098783 + 90098763 90098803 41 CAAGCCATGAGCAGCGACCCCGCGGGCGACGCCGCCGTCCC CAAGCCATGAGCAGCGACCCGGCGGGCGACGCCGCCGTCCC Direct Loss 0.962824962421113 0 0.84443223 0.91098344 prediction 0.925649924842227 Functional Loss - LRRC8C ENSG00000230735 ncRNA_intronic Human sense_intronic chr1:90098783 chr1:90098783 . . 0 21 hm5C_associated_SNPs_48168 0 0 1 0 1 LRRC8C chr1:90098881 5'GT 90098881 Upstream 99bp
chr2 170550995 170550995 1 + C T rs201743910 170550995 + 170550975 170551015 41 TGCTGCAGTTGGCGGTCGGGCTAGAGAAGAGAGGCGCCTGC TGCTGCAGTTGGCGGTCGGGTTAGAGAAGAGAGGCGCCTGC Direct Loss 0.962819574616356 0 0.79420733 0.84979033 prediction 0.925639149232711 Functional Loss - PHOSPHO2;PHOSPHO2-KLHL23 ENSG00000144362 UTR5 Human other chr2:170550995 chr2:170550995 . . 0 21 hm5C_associated_SNPs_48169 0 0 1 0 1 PHOSPHO2;PHOSPHO2-KLHL23 chr2:170551032 5'GT 170551032 Upstream 38bp
chr22 37329987 37329987 1 + C T BLCA 37329987 + 37329967 37330007 41 ACCTCCCGCACCGGCTACAACGGGATCTGGAGCGAGTGGAG ACCTCCCGCACCGGCTACAATGGGATCTGGAGCGAGTGGAG Direct Loss 0.96277149689241 0 0.7069436 0.35671508 prediction 0.92554299378482 Functional Loss - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37329987 chr22:37329987 synonymous SNV . 0 21 hm5C_associated_SNPs_48171 0 0 0 0 1 CSF2RB chr22:37330036 5'GT 37330036 Upstream 50bp
chr14 94582172 94582172 1 + C G GBM 94582172 + 94582152 94582192 41 TGCCATGGGCTTCACTGCGGCGGGAATCGCCTCGTCCTCCA TGCCATGGGCTTCACTGCGGGGGGAATCGCCTCGTCCTCCA Direct Loss 0.962762128581527 0 0.8964958 0.9272162 prediction 0.925524257163055 Functional Loss - IFI27 ENSG00000165949 CDS Human protein_coding chr14:94582172 chr14:94582172 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_48173 0 0 0 0 1 IFI27 chr14:94582127 3'AG 94582127 Downstream 46bp
chr19 3938612 3938612 1 + C T BLCA 3938612 + 3938592 3938632 41 TTTCCCCAGTGCTGGAGTCTCTGGACATGGAGGCCATGCTG TTTCCCCAGTGCTGGAGTCTTTGGACATGGAGGCCATGCTG Direct Loss 0.962742087035508 0 0.43532827 0.21969193 prediction 0.925484174071015 Functional Loss - NMRK2 ENSG00000077009 CDS Human protein_coding chr19:3938612 chr19:3938612 synonymous SNV . 0 21 hm5C_associated_SNPs_48176 0 0 0 0 1 NMRK2 chr19:3938601 3'AG 3938601 Downstream 12bp
chr6 35287768 35287768 1 + C T CESC 35287768 + 35287748 35287788 41 TGGAGGAGGTGCGGCAGAACCGGCAGAGGGCTGACGAGGAT TGGAGGAGGTGCGGCAGAACTGGCAGAGGGCTGACGAGGAT Direct Loss 0.962732315487693 0 0.78937703 0.7685609 prediction 0.925464630975386 Functional Loss - DEF6 ENSG00000023892 CDS Human protein_coding chr6:35287768 chr6:35287768 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_48177 0 0 0 0 1 DEF6 chr6:35287794 5'GT 35287794 Upstream 27bp
chr22 45683261 45683261 1 + C T COAD 45683261 + 45683241 45683281 41 CTGGTCAGGGTGGGTGCCAACGGGACCTGCCTGTGGGATCC CTGGTCAGGGTGGGTGCCAATGGGACCTGCCTGTGGGATCC Direct Loss 0.962722174724212 0 0.90895283 0.6827526 prediction 0.925444349448425 Functional Loss - UPK3A ENSG00000100373 CDS Human protein_coding chr22:45683261 chr22:45683261 synonymous SNV . 0 21 hm5C_associated_SNPs_48178 0 0 0 0 1 UPK3A chr22:45683332 5'GT 45683332 Upstream 72bp
chr11 6631462 6631462 1 + C T UCEC 6631462 + 6631442 6631482 41 TTCTGTGGGAACTGGTGACACGGGAGGTACCCTTTGCTGAC TTCTGTGGGAACTGGTGACATGGGAGGTACCCTTTGCTGAC Direct Loss 0.962684565144229 0 0.89518034 0.76248634 prediction 0.925369130288459 Functional Loss - ILK ENSG00000166333 CDS Human protein_coding chr11:6631462 chr11:6631462 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_48181 0 0 1 0 2 ILK chr11:6631379 3'AG 6631379 Downstream 84bp
chr11 6631462 6631462 1 + C T UCEC 6631462 + 6631442 6631482 41 TTCTGTGGGAACTGGTGACACGGGAGGTACCCTTTGCTGAC TTCTGTGGGAACTGGTGACATGGGAGGTACCCTTTGCTGAC Direct Loss 0.962684565144229 0 0.89518034 0.76248634 prediction 0.925369130288459 Functional Loss - ILK ENSG00000166333 CDS Human protein_coding chr11:6631462 chr11:6631462 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_48181 0 0 1 0 2 ILK chr11:6631509 5'GT 6631509 Upstream 48bp
chr22 50633335 50633335 1 + C A OV 50633335 + 50633315 50633355 41 TGTGGCTGTTGCAGACCATCCGGGAGGTGCAGCCTGACGTG TGTGGCTGTTGCAGACCATCAGGGAGGTGCAGCCTGACGTG Direct Loss 0.962658049440365 0 0.9259219 0.91806114 prediction 0.925316098880729 Functional Loss - TRABD ENSG00000170638 CDS Human protein_coding chr22:50633335 chr22:50633335 synonymous SNV . 0 21 hm5C_associated_SNPs_48183 0 0 1 0 1 TRABD chr22:50633329 3'AG 50633329 Downstream 7bp
chr7 63796694 63796694 1 + C A COAD 63796694 + 63796674 63796714 41 CCCCAGAAGAGTGGGAATGCCTGGACTCTGCTCAGCAGCGT CCCCAGAAGAGTGGGAATGCATGGACTCTGCTCAGCAGCGT Direct Loss 0.962622701024021 0 0.17619687 0.12732083 prediction 0.925245402048042 Functional Loss - ZNF736 ENSG00000234444 CDS Human protein_coding chr7:63796694 chr7:63796694 nonsynonymous SNV 0.437 3 21 hm5C_associated_SNPs_48186 0 0 1 0 2 ZNF736 chr7:63796637 3'AG 63796637 Downstream 58bp
chr7 63796694 63796694 1 + C A COAD 63796694 + 63796674 63796714 41 CCCCAGAAGAGTGGGAATGCCTGGACTCTGCTCAGCAGCGT CCCCAGAAGAGTGGGAATGCATGGACTCTGCTCAGCAGCGT Direct Loss 0.962622701024021 0 0.17619687 0.12732083 prediction 0.925245402048042 Functional Loss - ZNF736 ENSG00000234444 CDS Human protein_coding chr7:63796694 chr7:63796694 nonsynonymous SNV 0.437 3 21 hm5C_associated_SNPs_48186 0 0 1 0 2 ZNF736 chr7:63796763 5'GT 63796763 Upstream 70bp
chr6 74073358 74073358 1 + C A UCEC 74073358 + 74073338 74073378 41 TCAATAGAAGTCCGGGAGGCCGGGACGCAGCGTTCGGTGGA TCAATAGAAGTCCGGGAGGCAGGGACGCAGCGTTCGGTGGA Direct Loss 0.962553963034323 0 0.89321387 0.90596145 prediction 0.925107926068646 Functional Loss - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74073358 chr6:74073358 synonymous SNV . 0 21 hm5C_associated_SNPs_48190 0 0 0 0 1 KHDC3L chr6:74073279 3'AG 74073279 Downstream 80bp
chr7 134925358 134925358 1 + C T UCEC 134925358 + 134925338 134925378 41 AGCTGCAGGAGCTTGAGCATCGGGTGGCCCGGAGACGGCTG AGCTGCAGGAGCTTGAGCATTGGGTGGCCCGGAGACGGCTG Direct Loss 0.962528900858096 0 0.9087876 0.8798749 prediction 0.925057801716193 Functional Loss - STRA8 ENSG00000146857 CDS Human protein_coding chr7:134925358 chr7:134925358 nonsynonymous SNV 0.405 4 21 hm5C_associated_SNPs_48193 0 0 0 0 1 STRA8 chr7:134925271 3'AG 134925271 Downstream 88bp
chr19 3543663 3543663 1 + C T UCEC 3543663 + 3543643 3543683 41 TGTGGAAAGACAGGCCAATCCGGGGCAAGGAATACGGTGAG TGTGGAAAGACAGGCCAATCTGGGGCAAGGAATACGGTGAG Direct Loss 0.962508987751345 0 0.8934171 0.8020597 prediction 0.925017975502689 Functional Loss - C19orf71 ENSG00000183397 CDS Human protein_coding chr19:3543663 chr19:3543663 nonsynonymous SNV 0.006 1 21 hm5C_associated_SNPs_48196 0 0 0 0 1 C19orf71 chr19:3543678 5'GT 3543678 Upstream 16bp
chr6 7390256 7390256 1 + C T rs112923583 7390256 + 7390236 7390276 41 ATGGACTACCGGCGGCTTCTCATGAGCCGGGTGGTCCCCGG ATGGACTACCGGCGGCTTCTTATGAGCCGGGTGGTCCCCGG Direct Loss 0.962494474375758 0 0.859353 0.80812573 prediction 0.924988948751517 Functional Loss - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7390256 chr6:7390256 synonymous SNV . 0 21 hm5C_associated_SNPs_48197 0 0 1 0 1 RIOK1 chr6:7390306 5'GT 7390306 Upstream 51bp
chr1 26515860 26515860 1 + C T rs17163640 26515860 + 26515840 26515880 41 GCCAGTGGAAGGAGCAGAACCGGGAGCTGTACTCAGAGGGC GCCAGTGGAAGGAGCAGAACTGGGAGCTGTACTCAGAGGGC Direct Loss 0.962419814071286 0 0.90221274 0.8732283 prediction 0.924839628142571 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26515860 chr1:26515860 nonsynonymous SNV 0.984 0 21 hm5C_associated_SNPs_48201 0 0 0 0 1 CNKSR1 chr1:26515770 3'AG 26515770 Downstream 91bp
chr11 7586921 7586921 1 + C T BLCA 7586921 + 7586901 7586941 41 TGGAGATGCTGGAGCTTCCTCAGGAGAGAGCAGCCCTCCTG TGGAGATGCTGGAGCTTCCTTAGGAGAGAGCAGCCCTCCTG Direct Loss 0.962407093476356 0 0.9317409 0.9052009 prediction 0.924814186952711 Functional Loss - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7586921 chr11:7586921 stopgain 1.000 0 21 hm5C_associated_SNPs_48203 0 0 1 0 1 PPFIBP2 chr11:7586998 5'GT 7586998 Upstream 78bp
chr2 239229372 239229372 1 + C A rs13398676 239229372 + 239229352 239229392 41 ATTCGGAGGCCGCCGCTGACCGAGAAGCTGCTGAGCAAGCC ATTCGGAGGCCGCCGCTGACAGAGAAGCTGCTGAGCAAGCC Direct Loss 0.962389769455571 0 0.76680976 0.86224306 prediction 0.924779538911141 Functional Loss - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239229372 chr2:239229372 synonymous SNV . 0 21 hm5C_associated_SNPs_48205 0 0 1 0 1 TRAF3IP1 chr2:239229426 5'GT 239229426 Upstream 55bp
chr1 22964233 22964233 1 + C T STAD 22964233 + 22964213 22964253 41 AGGCAGGAAGACCTGGCAGACGGGGGCGGCCAGGCCTCAAG AGGCAGGAAGACCTGGCAGATGGGGGCGGCCAGGCCTCAAG Direct Loss 0.96237664626024 0 0.90903026 0.89354336 prediction 0.92475329252048 Functional Loss - C1QA ENSG00000173372 CDS Human protein_coding chr1:22964233 chr1:22964233 nonsynonymous SNV 0.016 2 21 hm5C_associated_SNPs_48207 0 0 0 0 1 C1QA chr1:22964272 5'GT 22964272 Upstream 40bp
chr6 54214608 54214608 1 + C T BRCA 54214608 + 54214588 54214628 41 GGTCTGATGGGCGAGGAAAACGGCATGCCACGAAGCCATGT GGTCTGATGGGCGAGGAAAATGGCATGCCACGAAGCCATGT Direct Loss 0.962376483859732 0 0.4924996 0.50629354 prediction 0.924752967719464 Functional Loss - TINAG ENSG00000137251 CDS Human protein_coding chr6:54214608 chr6:54214608 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_48209 0 0 0 2 2 TINAG chr6:54214514 3'AG 54214514 Downstream 95bp
chr6 54214608 54214608 1 + C T BRCA 54214608 + 54214588 54214628 41 GGTCTGATGGGCGAGGAAAACGGCATGCCACGAAGCCATGT GGTCTGATGGGCGAGGAAAATGGCATGCCACGAAGCCATGT Direct Loss 0.962376483859732 0 0.4924996 0.50629354 prediction 0.924752967719464 Functional Loss - TINAG ENSG00000137251 CDS Human protein_coding chr6:54214608 chr6:54214608 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_48209 0 0 0 2 2 TINAG chr6:54214694 5'GT 54214694 Upstream 87bp
chr21 42807886 42807886 1 + C T SKCM 42807886 + 42807866 42807906 41 CTGCCAGCCATCGCCGTCATCGGGGACCAGAGCTCGGGCAA CTGCCAGCCATCGCCGTCATTGGGGACCAGAGCTCGGGCAA Direct Loss 0.962372611427836 0 0.9531386 0.9346 prediction 0.924745222855672 Functional Loss - MX1 ENSG00000157601 CDS Human protein_coding chr21:42807886 chr21:42807886 synonymous SNV . 0 21 hm5C_associated_SNPs_48210 0 0 0 0 1 MX1 chr21:42807956 5'GT 42807956 Upstream 71bp
chr16 68941412 68941412 1 + C T LUAD 68941412 + 68941392 68941432 41 CAGGGCCGGGTGGAGCATCTCGGGGACTTGCTGTCCCACTG CAGGGCCGGGTGGAGCATCTTGGGGACTTGCTGTCCCACTG Direct Loss 0.962304108695033 0 0.9534515 0.9222823 prediction 0.924608217390065 Functional Loss - TANGO6 ENSG00000103047 CDS Human protein_coding chr16:68941412 chr16:68941412 synonymous SNV . 0 21 hm5C_associated_SNPs_48214 0 0 0 0 2 TANGO6 chr16:68941346 3'AG 68941346 Downstream 67bp
chr16 68941412 68941412 1 + C T LUAD 68941412 + 68941392 68941432 41 CAGGGCCGGGTGGAGCATCTCGGGGACTTGCTGTCCCACTG CAGGGCCGGGTGGAGCATCTTGGGGACTTGCTGTCCCACTG Direct Loss 0.962304108695033 0 0.9534515 0.9222823 prediction 0.924608217390065 Functional Loss - TANGO6 ENSG00000103047 CDS Human protein_coding chr16:68941412 chr16:68941412 synonymous SNV . 0 21 hm5C_associated_SNPs_48214 0 0 0 0 2 TANGO6 chr16:68941478 5'GT 68941478 Upstream 67bp
chrX 47083076 47083076 1 + C T STAD 47083076 + 47083056 47083096 41 GATGAGAGTGGTGGTGGTGGCGGCAGTGACCCTGGAGAGGC GATGAGAGTGGTGGTGGTGGTGGCAGTGACCCTGGAGAGGC Direct Loss 0.96229933572443 0 0.5938233 0.43477285 prediction 0.924598671448859 Functional Loss - CDK16 ENSG00000102225 CDS Human protein_coding chrX:47083076 chrX:47083076 synonymous SNV . 0 21 hm5C_associated_SNPs_48215 0 0 1 0 1 CDK16 chrX:47083158 5'GT 47083158 Upstream 83bp
chrX 13621517 13621517 1 + C T LUSC 13621517 + 13621497 13621537 41 ACAGTGCCTGTGTCCATCCTCAGGACTCCGCCTGGCCCCAA ACAGTGCCTGTGTCCATCCTTAGGACTCCGCCTGGCCCCAA Direct Loss 0.962294296293172 0 0.89852476 0.46728948 prediction 0.924588592586344 Functional Loss - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13621517 chrX:13621517 nonsynonymous SNV 0.420 1 21 hm5C_associated_SNPs_48218 0 0 0 0 2 EGFL6 chrX:13621436 3'AG 13621436 Downstream 82bp
chrX 13621517 13621517 1 + C T LUSC 13621517 + 13621497 13621537 41 ACAGTGCCTGTGTCCATCCTCAGGACTCCGCCTGGCCCCAA ACAGTGCCTGTGTCCATCCTTAGGACTCCGCCTGGCCCCAA Direct Loss 0.962294296293172 0 0.89852476 0.46728948 prediction 0.924588592586344 Functional Loss - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13621517 chrX:13621517 nonsynonymous SNV 0.420 1 21 hm5C_associated_SNPs_48218 0 0 0 0 2 EGFL6 chrX:13621555 5'GT 13621555 Upstream 39bp
chr9 91150635 91150635 1 + C T rs577696896 91150635 + 91150615 91150655 41 CCTGGCTGGCGCTGCCCTTCCACGACCCCTACCGGCAGTGA CCTGGCTGGCGCTGCCCTTCTACGACCCCTACCGGCAGTGA Direct Loss 0.962261558583896 0 0.23245716 0.19747362 prediction 0.924523117167791 Functional Loss - NXNL2 ENSG00000130045 CDS Human protein_coding chr9:91150635 chr9:91150635 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_48223 0 0 0 0 1 NXNL2 chr9:91150651 5'GT 91150651 Upstream 17bp
chr10 82363484 82363484 1 + C T STAD 82363484 + 82363464 82363504 41 AGCTTGGCCAGAGCCATGAGCAGGAGGCAAGACTCTACCAC AGCTTGGCCAGAGCCATGAGTAGGAGGCAAGACTCTACCAC Direct Loss 0.962193225656853 0 0.9123554 0.892969 prediction 0.924386451313706 Functional Loss - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82363484 chr10:82363484 stopgain 0.519 0 21 hm5C_associated_SNPs_48231 0 0 0 0 1 SH2D4B chr10:82363551 5'GT 82363551 Upstream 68bp
chr16 5128804 5128804 1 + C T CESC 5128804 + 5128784 5128824 41 AGCGGTCGGCCTTCACGGAGCGGGATGCTGGGAGCGGGCTG AGCGGTCGGCCTTCACGGAGTGGGATGCTGGGAGCGGGCTG Direct Loss 0.962185902116323 0 0.89709693 0.62796634 prediction 0.924371804232645 Functional Loss - ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128804 chr16:5128804 nonsynonymous SNV 0.008 0 21 hm5C_associated_SNPs_48232 0 0 1 0 2 ALG1 chr16:5128758 3'AG 5128758 Downstream 47bp
chr16 5128804 5128804 1 + C T CESC 5128804 + 5128784 5128824 41 AGCGGTCGGCCTTCACGGAGCGGGATGCTGGGAGCGGGCTG AGCGGTCGGCCTTCACGGAGTGGGATGCTGGGAGCGGGCTG Direct Loss 0.962185902116323 0 0.89709693 0.62796634 prediction 0.924371804232645 Functional Loss - ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128804 chr16:5128804 nonsynonymous SNV 0.008 0 21 hm5C_associated_SNPs_48232 0 0 1 0 2 ALG1 chr16:5128879 5'GT 5128879 Upstream 76bp
chr5 50685493 50685493 1 + C T SKCM 50685493 + 50685473 50685513 41 CCCGCAGCGGAGCCCATCTCCGCCAGGCAGCCAGCCCTGCG CCCGCAGCGGAGCCCATCTCTGCCAGGCAGCCAGCCCTGCG Direct Loss 0.96209643595621 0 0.6730525 0.3990417 prediction 0.92419287191242 Functional Loss - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50685493 chr5:50685493 synonymous SNV . 0 21 hm5C_associated_SNPs_48238 0 0 0 0 1 ISL1 chr5:50685480 3'AG 50685480 Downstream 14bp
chr19 16791316 16791316 1 + C T SKCM 16791316 + 16791296 16791336 41 GTGGTGCGAGTCCGCAAGATCGCGGTGGGCATCCATCACGC GTGGTGCGAGTCCGCAAGATTGCGGTGGGCATCCATCACGC Direct Loss 0.962090704406356 0 0.8948993 0.52005893 prediction 0.924181408812711 Functional Loss - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16791316 chr19:16791316 synonymous SNV . 0 21 hm5C_associated_SNPs_48239 0 0 1 0 1 TMEM38A chr19:16791392 5'GT 16791392 Upstream 77bp
chr1 32092459 32092459 1 + C G BRCA 32092459 + 32092439 32092479 41 GCCTGGGTCCCTGCGGCTCTCTGAAGGCCCCTAGTCCCCGC GCCTGGGTCCCTGCGGCTCTGTGAAGGCCCCTAGTCCCCGC Direct Loss 0.962082629051317 0 0.562256 0.46709156 prediction 0.924165258102633 Functional Loss - HCRTR1 ENSG00000121764 CDS Human protein_coding chr1:32092459 chr1:32092459 nonsynonymous SNV 0.997 0 21 hm5C_associated_SNPs_48240 0 0 0 0 1 HCRTR1 chr1:32092391 3'AG 32092391 Downstream 69bp
chr6 7404697 7404697 1 + C T PAAD 7404697 + 7404677 7404717 41 AGTTATCAGAATCCAAGGCTCGGGAGTTGTACCTGCAGGTC AGTTATCAGAATCCAAGGCTTGGGAGTTGTACCTGCAGGTC Direct Loss 0.96206530092788 0 0.9155021 0.43360978 prediction 0.924130601855759 Functional Loss - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7404697 chr6:7404697 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_48242 0 0 1 0 2 RIOK1 chr6:7404651 3'AG 7404651 Downstream 47bp
chr6 7404697 7404697 1 + C T PAAD 7404697 + 7404677 7404717 41 AGTTATCAGAATCCAAGGCTCGGGAGTTGTACCTGCAGGTC AGTTATCAGAATCCAAGGCTTGGGAGTTGTACCTGCAGGTC Direct Loss 0.96206530092788 0 0.9155021 0.43360978 prediction 0.924130601855759 Functional Loss - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7404697 chr6:7404697 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_48242 0 0 1 0 2 RIOK1 chr6:7404788 5'GT 7404788 Upstream 92bp
chr11 63283815 63283815 1 + C T BLCA 63283815 + 63283795 63283835 41 AGCAGGCCCTGGAGCAGCTGCGGGAGCTCCGGATCAGTGGA AGCAGGCCCTGGAGCAGCTGTGGGAGCTCCGGATCAGTGGA Direct Loss 0.962063710431899 0 0.92589694 0.8988863 prediction 0.924127420863797 Functional Loss - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63283815 chr11:63283815 nonsynonymous SNV 0.985 3 21 hm5C_associated_SNPs_48243 0 0 0 0 1 LGALS12 chr11:63283719 3'AG 63283719 Downstream 97bp
chr8 146278037 146278037 1 + C T UCEC 146278037 + 146278017 146278057 41 GGTACTCCCTGCGCGTCCCGCGGAGCCCGGCTTCCCGGCCC GGTACTCCCTGCGCGTCCCGTGGAGCCCGGCTTCCCGGCCC Direct Loss 0.962015283798507 0 0.92782533 0.90522146 prediction 0.924030567597014 Functional Loss - C8orf33 ENSG00000182307 CDS Human protein_coding chr8:146278037 chr8:146278037 synonymous SNV . 0 21 hm5C_associated_SNPs_48247 0 0 1 0 1 C8orf33 chr8:146277972 3'AG 146277972 Downstream 66bp
chr3 16254142 16254142 1 + C T SKCM 16254142 + 16254122 16254162 41 TAGGACACATCTACCAAAATCAGGATTCCCATTCCCCCCTC TAGGACACATCTACCAAAATTAGGATTCCCATTCCCCCCTC Direct Loss 0.962010810547334 0 0.933649 0.74567163 prediction 0.924021621094668 Functional Loss - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16254142 chr3:16254142 stopgain 0.006 0 21 hm5C_associated_SNPs_48248 0 0 0 0 1 GALNT15 chr3:16254076 3'AG 16254076 Downstream 67bp
chr20 36932679 36932679 1 + C T OV 36932679 + 36932659 36932699 41 GCGTCCCTGATGGTGCTGGTCGCCATAGGCACCGCCGTGAC GCGTCCCTGATGGTGCTGGTTGCCATAGGCACCGCCGTGAC Direct Loss 0.962008673228826 0 0.89912975 0.56433576 prediction 0.924017346457652 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36932679 chr20:36932679 synonymous SNV . 0 21 hm5C_associated_SNPs_48249 0 0 0 0 1 BPI chr20:36932755 5'GT 36932755 Upstream 77bp
chr6 24423221 24423221 1 + C T COAD 24423221 + 24423201 24423241 41 TTCATGGGAAGTGGCCTCATCTGGAGGCGCCTGCTTTCATT TTCATGGGAAGTGGCCTCATTTGGAGGCGCCTGCTTTCATT Direct Loss 0.961998448278465 0 0.8809952 0.9044728 prediction 0.923996896556931 Functional Loss - MRS2 ENSG00000124532 CDS Human protein_coding chr6:24423221 chr6:24423221 synonymous SNV . 0 21 hm5C_associated_SNPs_48251 0 0 1 0 2 MRS2 chr6:24423165 3'AG 24423165 Downstream 57bp
chr6 24423221 24423221 1 + C T COAD 24423221 + 24423201 24423241 41 TTCATGGGAAGTGGCCTCATCTGGAGGCGCCTGCTTTCATT TTCATGGGAAGTGGCCTCATTTGGAGGCGCCTGCTTTCATT Direct Loss 0.961998448278465 0 0.8809952 0.9044728 prediction 0.923996896556931 Functional Loss - MRS2 ENSG00000124532 CDS Human protein_coding chr6:24423221 chr6:24423221 synonymous SNV . 0 21 hm5C_associated_SNPs_48251 0 0 1 0 2 MRS2 chr6:24423278 5'GT 24423278 Upstream 58bp
chr11 6292339 6292339 1 + C A STAD 6292339 + 6292319 6292359 41 TTCCACGTTCCCGGCCTGCCCTGGAGCTGACGGCGCTGACG TTCCACGTTCCCGGCCTGCCATGGAGCTGACGGCGCTGACG Direct Loss 0.961989521041258 0 0.8463511 0.72590727 prediction 0.923979042082515 Functional Loss - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6292339 chr11:6292339 nonsynonymous SNV 0.015 0 21 hm5C_associated_SNPs_48252 0 0 0 0 1 CCKBR chr11:6292241 3'AG 6292241 Downstream 99bp
chr7 73609590 73609590 1 + C T CESC 73609590 + 73609570 73609610 41 AATCCCAACTCTGCTATCTTCGGGGGTGCCAGGCCTAGAGA AATCCCAACTCTGCTATCTTTGGGGGTGCCAGGCCTAGAGA Direct Loss 0.961976766045304 0 0.96414495 0.95012003 prediction 0.923953532090608 Functional Loss - EIF4H ENSG00000106682 CDS Human protein_coding chr7:73609590 chr7:73609590 synonymous SNV . 0 21 hm5C_associated_SNPs_48253 0 0 1 0 1 EIF4H chr7:73609499 3'AG 73609499 Downstream 92bp
chr22 29694812 29694812 1 + C T BLCA 29694812 + 29694792 29694832 41 GCTTCCCTCCAAGAGGACCCCGGGGTTCCCGAGGGAACCCC GCTTCCCTCCAAGAGGACCCTGGGGTTCCCGAGGGAACCCC Direct Loss 0.961946068381485 0 0.86720204 0.65776265 prediction 0.92389213676297 Functional Loss - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29694812 chr22:29694812 nonsynonymous SNV 0.846 3 21 hm5C_associated_SNPs_48257 0 0 1 0 2 EWSR1 chr22:29694723 3'AG 29694723 Downstream 90bp
chr22 29694812 29694812 1 + C T BLCA 29694812 + 29694792 29694832 41 GCTTCCCTCCAAGAGGACCCCGGGGTTCCCGAGGGAACCCC GCTTCCCTCCAAGAGGACCCTGGGGTTCCCGAGGGAACCCC Direct Loss 0.961946068381485 0 0.86720204 0.65776265 prediction 0.92389213676297 Functional Loss - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29694812 chr22:29694812 nonsynonymous SNV 0.846 3 21 hm5C_associated_SNPs_48257 0 0 1 0 2 EWSR1 chr22:29694885 5'GT 29694885 Upstream 74bp
chr4 3446132 3446132 1 + C G rs1987546 3446132 + 3446112 3446152 41 GTGGAACAGTGCGAGTGCTTCGGGGGCCGGACCTGGTGCGA GTGGAACAGTGCGAGTGCTTGGGGGGCCGGACCTGGTGCGA Direct Loss 0.961937183689968 0 0.9261302 0.91192025 prediction 0.923874367379936 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3446132 chr4:3446132 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_48259 0 0 1 0 2 HGFAC chr4:3446038 3'AG 3446038 Downstream 95bp
chr4 3446132 3446132 1 + C G rs1987546 3446132 + 3446112 3446152 41 GTGGAACAGTGCGAGTGCTTCGGGGGCCGGACCTGGTGCGA GTGGAACAGTGCGAGTGCTTGGGGGGCCGGACCTGGTGCGA Direct Loss 0.961937183689968 0 0.9261302 0.91192025 prediction 0.923874367379936 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3446132 chr4:3446132 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_48259 0 0 1 0 2 HGFAC chr4:3446169 5'GT 3446169 Upstream 38bp
chr3 113344967 113344967 1 + C T GBM 113344967 + 113344947 113344987 41 AGGGAACTCCGGCCGAATCCCGGGAGAAGAACCGCGAGTGC AGGGAACTCCGGCCGAATCCTGGGAGAAGAACCGCGAGTGC Direct Loss 0.961905903148444 0 0.93156517 0.90043384 prediction 0.923811806296888 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113344967 chr3:113344967 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_48261 0 0 0 0 2 SIDT1 chr3:113344949 3'AG 113344949 Downstream 19bp
chr3 113344967 113344967 1 + C T GBM 113344967 + 113344947 113344987 41 AGGGAACTCCGGCCGAATCCCGGGAGAAGAACCGCGAGTGC AGGGAACTCCGGCCGAATCCTGGGAGAAGAACCGCGAGTGC Direct Loss 0.961905903148444 0 0.93156517 0.90043384 prediction 0.923811806296888 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113344967 chr3:113344967 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_48261 0 0 0 0 2 SIDT1 chr3:113345062 5'GT 113345062 Upstream 96bp
chr3 128628943 128628943 1 + C T ESCA 128628943 + 128628923 128628963 41 TGGCATGACGGCCGTGCTGTCGCGGGCCAGCCGCTCCATCC TGGCATGACGGCCGTGCTGTTGCGGGCCAGCCGCTCCATCC Direct Loss 0.961870478312577 0 0.9345932 0.58163285 prediction 0.923740956625155 Functional Loss - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128628943 chr3:128628943 nonsynonymous SNV 0.042 5 21 hm5C_associated_SNPs_48262 0 0 0 0 2 ACAD9 chr3:128628864 3'AG 128628864 Downstream 80bp
chr3 128628943 128628943 1 + C T ESCA 128628943 + 128628923 128628963 41 TGGCATGACGGCCGTGCTGTCGCGGGCCAGCCGCTCCATCC TGGCATGACGGCCGTGCTGTTGCGGGCCAGCCGCTCCATCC Direct Loss 0.961870478312577 0 0.9345932 0.58163285 prediction 0.923740956625155 Functional Loss - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128628943 chr3:128628943 nonsynonymous SNV 0.042 5 21 hm5C_associated_SNPs_48262 0 0 0 0 2 ACAD9 chr3:128628992 5'GT 128628992 Upstream 50bp
chr12 7067094 7067094 1 + C T UCEC 7067094 + 7067074 7067114 41 CGGCTTAGGGAGACCTGATTCGGGAGATCTGGCATTACCAG CGGCTTAGGGAGACCTGATTTGGGAGATCTGGCATTACCAG Direct Loss 0.961825136482369 0 0.96406525 0.95372593 prediction 0.923650272964737 Functional Loss - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7067094 chr12:7067094 nonsynonymous SNV 0.998 5 21 hm5C_associated_SNPs_48266 0 0 0 0 1 PTPN6 chr12:7067082 3'AG 7067082 Downstream 13bp
chr17 72346991 72346991 1 + C T rs184071429 72346991 + 72346971 72347011 41 CACCCGAGGTGGCCGCAGCCCGGGAGAGCATTGCAGCCCTG CACCCGAGGTGGCCGCAGCCTGGGAGAGCATTGCAGCCCTG Direct Loss 0.961807562820101 0 0.89705795 0.8931688 prediction 0.923615125640202 Functional Loss - KIF19 ENSG00000196169;ENSG00000268626 CDS Human other chr17:72346991 chr17:72346991 nonsynonymous SNV 0.162 0 21 hm5C_associated_SNPs_48269 0 0 0 0 1 KIF19 chr17:72347044 5'GT 72347044 Upstream 54bp
chr16 57758610 57758610 1 + C T UCEC 57758610 + 57758590 57758630 41 GTGTGGATGGCCTGATGAAGCGGGAGGAGACACCCAGGACA GTGTGGATGGCCTGATGAAGTGGGAGGAGACACCCAGGACA Direct Loss 0.961802737684623 0 0.9124189 0.78790176 prediction 0.923605475369246 Functional Loss - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57758610 chr16:57758610 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_48271 0 0 0 0 1 DRC7 chr16:57758527 3'AG 57758527 Downstream 84bp
chrX 15693873 15693873 1 + C T rs190788254 15693873 + 15693853 15693893 41 CGTGCGGGATCCTCGGGTACCGGGAGCGAACGAGGAGGTTC CGTGCGGGATCCTCGGGTACTGGGAGCGAACGAGGAGGTTC Direct Loss 0.961801166467661 0 0.92021734 0.9106332 prediction 0.923602332935321 Functional Loss - CA5BP1 ENSG00000186312 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:15693873 chrX:15693873 . . 0 21 hm5C_associated_SNPs_48272 0 0 1 0 2 CA5BP1 chrX:15693813 3'AG 15693813 Downstream 61bp
chrX 15693873 15693873 1 + C T rs190788254 15693873 + 15693853 15693893 41 CGTGCGGGATCCTCGGGTACCGGGAGCGAACGAGGAGGTTC CGTGCGGGATCCTCGGGTACTGGGAGCGAACGAGGAGGTTC Direct Loss 0.961801166467661 0 0.92021734 0.9106332 prediction 0.923602332935321 Functional Loss - CA5BP1 ENSG00000186312 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:15693873 chrX:15693873 . . 0 21 hm5C_associated_SNPs_48272 0 0 1 0 2 CA5BP1 chrX:15693901 5'GT 15693901 Upstream 29bp
chr13 113976660 113976660 1 + C T UCEC 113976660 + 113976640 113976680 41 CGCTGTGGGTGGTGCCCTGGCGGGGCTGGTCCTCATCGTCC CGCTGTGGGTGGTGCCCTGGTGGGGCTGGTCCTCATCGTCC Direct Loss 0.961800918318583 0 0.92941344 0.8576722 prediction 0.923601836637165 Functional Loss - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113976660 chr13:113976660 nonsynonymous SNV 0.983 3 21 hm5C_associated_SNPs_48273 0 0 1 0 1 LAMP1 chr13:113976597 3'AG 113976597 Downstream 64bp
chr16 90097731 90097731 1 + C A UCEC 90097731 + 90097711 90097751 41 AGGAGCATGTCAGCCGCATCCGGGAGGAGCTGGACCGCGAG AGGAGCATGTCAGCCGCATCAGGGAGGAGCTGGACCGCGAG Direct Loss 0.961798726076807 0 0.9236071 0.90571165 prediction 0.923597452153615 Functional Loss - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90097731 chr16:90097731 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_48274 0 0 1 0 1 GAS8 chr16:90097707 3'AG 90097707 Downstream 25bp
chr17 57643053 57643053 1 + C G HNSC 57643053 + 57643033 57643073 41 ATGTCCCGGTTTCCCGCAGTCGCGGGCAGGGCGCCAAGGCG ATGTCCCGGTTTCCCGCAGTGGCGGGCAGGGCGCCAAGGCG Direct Loss 0.961795542189457 0 0.68484676 0.4248318 prediction 0.923591084378914 Functional Loss - DHX40 ENSG00000108406 CDS Human protein_coding chr17:57643053 chr17:57643053 synonymous SNV . 0 21 hm5C_associated_SNPs_48275 0 0 1 0 1 DHX40 chr17:57643144 5'GT 57643144 Upstream 92bp
chr1 226027611 226027611 1 + C T GBM 226027611 + 226027591 226027631 41 CTCCTCCTGGGACAGCGTTTCGGGAGGTTTCTTGGCCTCAC CTCCTCCTGGGACAGCGTTTTGGGAGGTTTCTTGGCCTCAC Direct Loss 0.961794499046137 0 0.955202 0.93117535 prediction 0.923588998092275 Functional Loss - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226027611 chr1:226027611 synonymous SNV . 0 21 hm5C_associated_SNPs_48276 0 0 1 0 1 EPHX1 chr1:226027530 3'AG 226027530 Downstream 82bp
chr16 81774135 81774135 1 + C G rs189270362 81774135 + 81774115 81774155 41 GCAGGCAGATCGCCTGAAGTCGGGAGTTTGAGACCAGCCTG GCAGGCAGATCGCCTGAAGTGGGGAGTTTGAGACCAGCCTG Direct Loss 0.961789652274458 0 0.9288429 0.8924314 prediction 0.923579304548916 Functional Loss - CMIP;PLCG2 ENSG00000261218 ncRNA_exonic Human lincRNA chr16:81774135 chr16:81774135 . . 0 21 hm5C_associated_SNPs_48277 0 0 0 0 1 CMIP;PLCG2 chr16:81774071 3'AG 81774071 Downstream 65bp
chr14 105398121 105398121 1 + C T PRAD 105398121 + 105398101 105398141 41 TCTGTCCCCAGGGCCGCACCCGGGACCTGGAGGCGCTGCTG TCTGTCCCCAGGGCCGCACCTGGGACCTGGAGGCGCTGCTG Direct Loss 0.961778771815727 0 0.93154407 0.8890769 prediction 0.923557543631454 Functional Loss - PLD4 ENSG00000166428 CDS Human protein_coding chr14:105398121 chr14:105398121 nonsynonymous SNV 0.338 0 21 hm5C_associated_SNPs_48278 0 0 0 0 1 PLD4 chr14:105398085 3'AG 105398085 Downstream 37bp
chr9 140130499 140130499 1 + C T UCEC 140130499 + 140130479 140130519 41 ATCCCGCTGGCCAGGCACTTCGGGGTGGTGACCGCCCGTTA ATCCCGCTGGCCAGGCACTTTGGGGTGGTGACCGCCCGTTA Direct Loss 0.961749805253121 0 0.9369482 0.93001807 prediction 0.923499610506241 Functional Loss - SLC34A3 ENSG00000198569 CDS Human protein_coding chr9:140130499 chr9:140130499 synonymous SNV . 0 21 hm5C_associated_SNPs_48280 0 0 0 0 1 SLC34A3 chr9:140130404 3'AG 140130404 Downstream 96bp
chr15 41102889 41102889 1 + C A rs533156538 41102889 + 41102869 41102909 41 GGACCCAAGCCCAGCAGACACAGGATCTGCTAACGCAGCTG GGACCCAAGCCCAGCAGACAAAGGATCTGCTAACGCAGCTG Direct Loss 0.961724510614416 0 0.79883146 0.7401215 prediction 0.923449021228832 Functional Loss - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41102889 chr15:41102889 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_48281 0 0 1 0 2 ZFYVE19 chr15:41102847 3'AG 41102847 Downstream 43bp
chr15 41102889 41102889 1 + C A rs533156538 41102889 + 41102869 41102909 41 GGACCCAAGCCCAGCAGACACAGGATCTGCTAACGCAGCTG GGACCCAAGCCCAGCAGACAAAGGATCTGCTAACGCAGCTG Direct Loss 0.961724510614416 0 0.79883146 0.7401215 prediction 0.923449021228832 Functional Loss - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41102889 chr15:41102889 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_48281 0 0 1 0 2 ZFYVE19 chr15:41102955 5'GT 41102955 Upstream 67bp
chr17 80439027 80439027 1 + C T BLCA 80439027 + 80439007 80439047 41 ACAAGAAGCTGGAGGCTCTTCAGGAAAGCCTTCCCCCTGCT ACAAGAAGCTGGAGGCTCTTTAGGAAAGCCTTCCCCCTGCT Direct Loss 0.96167984681341 0 0.88317907 0.8175708 prediction 0.923359693626819 Functional Loss - NARF ENSG00000141562 CDS Human protein_coding chr17:80439027 chr17:80439027 stopgain 0.894 1 21 hm5C_associated_SNPs_48284 0 0 1 0 1 NARF chr17:80438958 3'AG 80438958 Downstream 70bp
chr20 49197851 49197851 1 + C T UCEC 49197851 + 49197831 49197871 41 GGGTCGTGGGGGGAAGTCTTCGAGGTGCCCAGGCTGCCTCC GGGTCGTGGGGGGAAGTCTTTGAGGTGCCCAGGCTGCCTCC Direct Loss 0.961666969267383 0 0.933569 0.9184493 prediction 0.923333938534766 Functional Loss - PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49197851 chr20:49197851 stopgain 0.004 0 21 hm5C_associated_SNPs_48287 0 0 1 0 1 PTPN1 chr20:49197802 3'AG 49197802 Downstream 50bp
chr17 46628524 46628524 1 - G A STAD 46628524 - 46628504 46628544 41 GCAGAGGGCTGTGGTGGCGGCGGCGGTGGCGGCGGCGGCGG GCAGAGGGCTGTGGTGGCGGTGGCGGTGGCGGCGGCGGCGG Direct Loss 0.961651676595876 0 0.9302905 0.91624236 prediction 0.923303353191753 Functional Loss - HOXB3 ENSG00000120093 CDS Human protein_coding chr17:46628524 chr17:46628524 synonymous SNV . 0 21 hm5C_associated_SNPs_48290 0 0 0 0 1 HOXB3 chr17:46628543 3'AG 46628543 Downstream 20bp
chr19 17972938 17972938 1 + C T UCEC 17972938 + 17972918 17972958 41 CCCCTGCGGGTGAAGAACTTCGGGATCTGGCTGCGCTATGA CCCCTGCGGGTGAAGAACTTTGGGATCTGGCTGCGCTATGA Direct Loss 0.961620774508801 0 0.91427135 0.9051723 prediction 0.923241549017603 Functional Loss - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17972938 chr19:17972938 synonymous SNV . 0 21 hm5C_associated_SNPs_48293 0 0 1 0 2 RPL18A chr19:17972903 3'AG 17972903 Downstream 36bp
chr19 17972938 17972938 1 + C T UCEC 17972938 + 17972918 17972958 41 CCCCTGCGGGTGAAGAACTTCGGGATCTGGCTGCGCTATGA CCCCTGCGGGTGAAGAACTTTGGGATCTGGCTGCGCTATGA Direct Loss 0.961620774508801 0 0.91427135 0.9051723 prediction 0.923241549017603 Functional Loss - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17972938 chr19:17972938 synonymous SNV . 0 21 hm5C_associated_SNPs_48293 0 0 1 0 2 RPL18A chr19:17973032 5'GT 17973032 Upstream 95bp
chr18 71825498 71825498 1 + C T UCEC 71825498 + 71825478 71825518 41 GAAGCAAGGAACGGTGTATGCGCAAGTGAAAGAGGTGTGGG GAAGCAAGGAACGGTGTATGTGCAAGTGAAAGAGGTGTGGG Direct Loss 0.961594504543667 0 0.82438874 0.3677173 prediction 0.923189009087333 Functional Loss - TIMM21 ENSG00000075336 CDS Human protein_coding chr18:71825498 chr18:71825498 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_48297 0 0 1 0 2 TIMM21 chr18:71825406 3'AG 71825406 Downstream 93bp
chr18 71825498 71825498 1 + C T UCEC 71825498 + 71825478 71825518 41 GAAGCAAGGAACGGTGTATGCGCAAGTGAAAGAGGTGTGGG GAAGCAAGGAACGGTGTATGTGCAAGTGAAAGAGGTGTGGG Direct Loss 0.961594504543667 0 0.82438874 0.3677173 prediction 0.923189009087333 Functional Loss - TIMM21 ENSG00000075336 CDS Human protein_coding chr18:71825498 chr18:71825498 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_48297 0 0 1 0 2 TIMM21 chr18:71825511 5'GT 71825511 Upstream 14bp
chr7 87258169 87258169 1 + C G rs201345739 87258169 + 87258149 87258189 41 CGGAGCCTGGGGGGCCTGAGCGGGATCCGCGGCGGTGGCGG CGGAGCCTGGGGGGCCTGAGGGGGATCCGCGGCGGTGGCGG Direct Loss 0.961507683149913 0 0.9292712 0.9294359 prediction 0.923015366299826 Functional Loss - RUNDC3B ENSG00000105784 CDS Human protein_coding chr7:87258169 chr7:87258169 nonsynonymous SNV 0.955 0 21 hm5C_associated_SNPs_48306 0 0 0 0 1 RUNDC3B chr7:87258261 5'GT 87258261 Upstream 93bp
chr1 207297548 207297548 1 + C T BLCA 207297548 + 207297528 207297568 41 TGTAAGCCTCCTCCAGACATCAGGAATGGAAGGCACAGCGG TGTAAGCCTCCTCCAGACATTAGGAATGGAAGGCACAGCGG Direct Loss 0.961497011885482 0 0.5600424 0.4496199 prediction 0.922994023770963 Functional Loss - C4BPA ENSG00000123838 CDS Human protein_coding chr1:207297548 chr1:207297548 synonymous SNV . 0 21 hm5C_associated_SNPs_48308 0 0 0 0 1 C4BPA chr1:207297520 3'AG 207297520 Downstream 29bp
chr1 223943283 223943283 1 + C G HNSC 223943283 + 223943263 223943303 41 CCTTCCTGGTGGGGCTCATTCAGAAGCACCGACGGCGGCAG CCTTCCTGGTGGGGCTCATTGAGAAGCACCGACGGCGGCAG Direct Loss 0.961482840675793 0 0.9006562 0.86336523 prediction 0.922965681351585 Functional Loss - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943283 chr1:223943283 nonsynonymous SNV 0.998 5 21 hm5C_associated_SNPs_48310 0 0 1 0 1 CAPN2 chr1:223943351 5'GT 223943351 Upstream 69bp
chr2 96934237 96934237 1 + C T UCEC 96934237 + 96934217 96934257 41 ATGACACAGTGAAGCTGTACCGGGAGGAAGAGGATGACTGG ATGACACAGTGAAGCTGTACTGGGAGGAAGAGGATGACTGG Direct Loss 0.961408562337819 0 0.9360867 0.92499715 prediction 0.922817124675638 Functional Loss - CIAO1 ENSG00000144021 CDS Human protein_coding chr2:96934237 chr2:96934237 nonsynonymous SNV 0.976 2 21 hm5C_associated_SNPs_48319 0 0 1 0 1 CIAO1 chr2:96934195 3'AG 96934195 Downstream 43bp
chr5 157098766 157098766 1 + C T UCEC 157098766 + 157098746 157098786 41 CTCGGCCGCCGCCCAGAAATCGGCGTAGGGGGTCAGCCGCA CTCGGCCGCCGCCCAGAAATTGGCGTAGGGGGTCAGCCGCA Direct Loss 0.961404520184278 0 0.9312324 0.8887468 prediction 0.922809040368557 Functional Loss - C5orf52 ENSG00000187658 CDS Human protein_coding chr5:157098766 chr5:157098766 synonymous SNV . 0 21 hm5C_associated_SNPs_48320 0 0 0 0 1 C5orf52 chr5:157098834 5'GT 157098834 Upstream 69bp
chr19 17972996 17972996 1 + C T SKCM 17972996 + 17972976 17973016 41 ACAACATGTACCGGGAATACCGGGACCTGACCACCGCAGGC ACAACATGTACCGGGAATACTGGGACCTGACCACCGCAGGC Direct Loss 0.961380541496904 0 0.91992056 0.86219656 prediction 0.922761082993809 Functional Loss - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17972996 chr19:17972996 nonsynonymous SNV 0.989 2 21 hm5C_associated_SNPs_48325 0 0 1 0 2 RPL18A chr19:17972903 3'AG 17972903 Downstream 94bp
chr19 17972996 17972996 1 + C T SKCM 17972996 + 17972976 17973016 41 ACAACATGTACCGGGAATACCGGGACCTGACCACCGCAGGC ACAACATGTACCGGGAATACTGGGACCTGACCACCGCAGGC Direct Loss 0.961380541496904 0 0.91992056 0.86219656 prediction 0.922761082993809 Functional Loss - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17972996 chr19:17972996 nonsynonymous SNV 0.989 2 21 hm5C_associated_SNPs_48325 0 0 1 0 2 RPL18A chr19:17973032 5'GT 17973032 Upstream 37bp
chr8 75756241 75756241 1 + C T COAD 75756241 + 75756221 75756261 41 GGATGAAAATCTTGCAAAATCGGCAGAGGCTTGGGCGGCTA GGATGAAAATCTTGCAAAATTGGCAGAGGCTTGGGCGGCTA Direct Loss 0.961367852731117 0 0.74296063 0.3032392 prediction 0.922735705462234 Functional Loss - PI15 ENSG00000137558 CDS Human protein_coding chr8:75756241 chr8:75756241 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_48327 0 0 1 0 2 PI15 chr8:75756216 3'AG 75756216 Downstream 26bp
chr8 75756241 75756241 1 + C T COAD 75756241 + 75756221 75756261 41 GGATGAAAATCTTGCAAAATCGGCAGAGGCTTGGGCGGCTA GGATGAAAATCTTGCAAAATTGGCAGAGGCTTGGGCGGCTA Direct Loss 0.961367852731117 0 0.74296063 0.3032392 prediction 0.922735705462234 Functional Loss - PI15 ENSG00000137558 CDS Human protein_coding chr8:75756241 chr8:75756241 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_48327 0 0 1 0 2 PI15 chr8:75756334 5'GT 75756334 Upstream 94bp
chr2 135621039 135621039 1 + C T SKCM 135621039 + 135621019 135621059 41 AGCACCGTTGTGAGCTACCCCAGGAGGTTCGTGGGTCTGGG AGCACCGTTGTGAGCTACCCTAGGAGGTTCGTGGGTCTGGG Direct Loss 0.961366277697795 0 0.87548333 0.87540126 prediction 0.922732555395591 Functional Loss - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135621039 chr2:135621039 synonymous SNV . 0 21 hm5C_associated_SNPs_48328 0 0 0 0 1 ACMSD chr2:135620965 3'AG 135620965 Downstream 75bp
chr16 57503125 57503125 1 + C T SKCM 57503125 + 57503105 57503145 41 AGTGCTCGGTGGAGTTCACCCTCGATGTGCGGTGCAATGAA AGTGCTCGGTGGAGTTCACCTTCGATGTGCGGTGCAATGAA Direct Loss 0.961357669032423 0 0.9109592 0.79845023 prediction 0.922715338064846 Functional Loss - POLR2C ENSG00000102978 CDS Human protein_coding chr16:57503125 chr16:57503125 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_48329 0 0 1 0 2 POLR2C chr16:57503077 3'AG 57503077 Downstream 49bp
chr16 57503125 57503125 1 + C T SKCM 57503125 + 57503105 57503145 41 AGTGCTCGGTGGAGTTCACCCTCGATGTGCGGTGCAATGAA AGTGCTCGGTGGAGTTCACCTTCGATGTGCGGTGCAATGAA Direct Loss 0.961357669032423 0 0.9109592 0.79845023 prediction 0.922715338064846 Functional Loss - POLR2C ENSG00000102978 CDS Human protein_coding chr16:57503125 chr16:57503125 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_48329 0 0 1 0 2 POLR2C chr16:57503205 5'GT 57503205 Upstream 81bp
chr1 77987593 77987593 1 + C T UCEC 77987593 + 77987573 77987613 41 TCCTGATTGACGGCTATCCTCGGGAGGTGAAGCAAGGGGAA TCCTGATTGACGGCTATCCTTGGGAGGTGAAGCAAGGGGAA Direct Loss 0.961317512096695 0 0.9313928 0.90655977 prediction 0.92263502419339 Functional Loss - AK5 ENSG00000154027 CDS Human protein_coding chr1:77987593 chr1:77987593 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_48335 0 0 0 0 1 AK5 chr1:77987512 3'AG 77987512 Downstream 82bp
chr11 111411631 111411631 1 + C T COAD 111411631 + 111411611 111411651 41 CTGCTGGTGGGGCTGCGGGCCGCGACGGGTCGCCTGCTGAG CTGCTGGTGGGGCTGCGGGCTGCGACGGGTCGCCTGCTGAG Direct Loss 0.961281778104537 0 0.4717675 0.36187518 prediction 0.922563556209074 Functional Loss - LAYN ENSG00000204381 CDS Human protein_coding chr11:111411631 chr11:111411631 synonymous SNV . 0 21 hm5C_associated_SNPs_48339 0 0 0 0 1 LAYN chr11:111411653 5'GT 111411653 Upstream 23bp
chr10 54074743 54074743 1 + C T OV 54074743 + 54074723 54074763 41 AGTACTGCGCTAGTCCCACCCGCGGAGGGGACGCAGGCGTG AGTACTGCGCTAGTCCCACCTGCGGAGGGGACGCAGGCGTG Direct Loss 0.961236283466084 0 0.68537784 0.5872376 prediction 0.922472566932167 Functional Loss - DKK1 ENSG00000107984 CDS Human protein_coding chr10:54074743 chr10:54074743 nonsynonymous SNV 0.556 2 21 hm5C_associated_SNPs_48342 0 0 1 0 1 DKK1 chr10:54074683 3'AG 54074683 Downstream 61bp
chr17 38975353 38975353 1 - G A SKCM 38975353 - 38975333 38975373 41 GGCTACGGCGGCGGAAGCTCCGGCGGCGGAAGCTCCGGCGG GGCTACGGCGGCGGAAGCTCTGGCGGCGGAAGCTCCGGCGG Direct Loss 0.96123405279446 0 0.9177871 0.8966439 prediction 0.92246810558892 Functional Loss - KRT10 ENSG00000186395 CDS Human protein_coding chr17:38975353 chr17:38975353 synonymous SNV . 0 21 hm5C_associated_SNPs_48343 0 0 0 0 1 KRT10 chr17:38975413 3'AG 38975413 Downstream 61bp
chr1 27657266 27657266 1 + C T UCEC 27657266 + 27657246 27657286 41 GCACATCCACAGGAGTCATTCGGGACTTCGCGGGCCCCTAC GCACATCCACAGGAGTCATTTGGGACTTCGCGGGCCCCTAC Direct Loss 0.961206744944379 0 0.93953514 0.8476705 prediction 0.922413489888759 Functional Loss - TMEM222 ENSG00000186501 CDS Human protein_coding chr1:27657266 chr1:27657266 nonsynonymous SNV 0.992 4 21 hm5C_associated_SNPs_48346 0 0 1 0 2 TMEM222 chr1:27657211 3'AG 27657211 Downstream 56bp
chr1 27657266 27657266 1 + C T UCEC 27657266 + 27657246 27657286 41 GCACATCCACAGGAGTCATTCGGGACTTCGCGGGCCCCTAC GCACATCCACAGGAGTCATTTGGGACTTCGCGGGCCCCTAC Direct Loss 0.961206744944379 0 0.93953514 0.8476705 prediction 0.922413489888759 Functional Loss - TMEM222 ENSG00000186501 CDS Human protein_coding chr1:27657266 chr1:27657266 nonsynonymous SNV 0.992 4 21 hm5C_associated_SNPs_48346 0 0 1 0 2 TMEM222 chr1:27657295 5'GT 27657295 Upstream 30bp
chr10 122216841 122216841 1 + C T rs192701942 122216841 + 122216821 122216861 41 CGGGAGCTGGCCATTGAGATCGGGGTGCGAGCCCTGCTCTT CGGGAGCTGGCCATTGAGATTGGGGTGCGAGCCCTGCTCTT Direct Loss 0.961203144847127 0 0.95472896 0.9296495 prediction 0.922406289694254 Functional Loss - PLPP4 ENSG00000203805 CDS Human protein_coding chr10:122216841 chr10:122216841 synonymous SNV . 0 21 hm5C_associated_SNPs_48347 0 0 0 0 1 PLPP4 chr10:122216873 5'GT 122216873 Upstream 33bp
chr14 59105188 59105188 1 + C T rs2003021 59105188 + 59105168 59105208 41 CGCCCCGCGCTGGGGAGCTACTGGGGGAGGCGGCGCAGCGC CGCCCCGCGCTGGGGAGCTATTGGGGGAGGCGGCGCAGCGC Direct Loss 0.961176507650474 0 0.9360118 0.94334936 prediction 0.922353015300947 Functional Loss - DACT1 ENSG00000165617 CDS Human protein_coding chr14:59105188 chr14:59105188 synonymous SNV . 0 21 hm5C_associated_SNPs_48349 0 0 0 0 1 DACT1 chr14:59105265 5'GT 59105265 Upstream 78bp
chr19 36631958 36631958 1 + C G LGG 36631958 + 36631938 36631978 41 AAGGGCGGCGGCGGCGGCGGCGGGGGAGGCGGGGGCCTGGG AAGGGCGGCGGCGGCGGCGGGGGGGGAGGCGGGGGCCTGGG Direct Loss 0.961176138066778 0 0.93225265 0.93041146 prediction 0.922352276133556 Functional Loss - CAPNS1 ENSG00000126247 CDS Human protein_coding chr19:36631958 chr19:36631958 synonymous SNV . 0 21 hm5C_associated_SNPs_48350 0 0 1 0 2 CAPNS1 chr19:36631899 3'AG 36631899 Downstream 60bp
chr19 36631958 36631958 1 + C G LGG 36631958 + 36631938 36631978 41 AAGGGCGGCGGCGGCGGCGGCGGGGGAGGCGGGGGCCTGGG AAGGGCGGCGGCGGCGGCGGGGGGGGAGGCGGGGGCCTGGG Direct Loss 0.961176138066778 0 0.93225265 0.93041146 prediction 0.922352276133556 Functional Loss - CAPNS1 ENSG00000126247 CDS Human protein_coding chr19:36631958 chr19:36631958 synonymous SNV . 0 21 hm5C_associated_SNPs_48350 0 0 1 0 2 CAPNS1 chr19:36631902 3'AG 36631902 Downstream 57bp
chr17 6927434 6927434 1 + C T UCEC 6927434 + 6927414 6927454 41 TTCAATTTTCCGGGGCCGTGCGGGAGTCGGGGTGGACGTGC TTCAATTTTCCGGGGCCGTGTGGGAGTCGGGGTGGACGTGC Direct Loss 0.961171044903228 0 0.9395505 0.9101682 prediction 0.922342089806457 Functional Loss - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6927434 chr17:6927434 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_48351 0 0 0 0 1 BCL6B chr17:6927402 3'AG 6927402 Downstream 33bp
chr19 50926238 50926238 1 + C A TGCT 50926238 + 50926218 50926258 41 ACCTCGAACTGGCCCCCAGCCTGGAGGCCCCGGGGCCTGGC ACCTCGAACTGGCCCCCAGCATGGAGGCCCCGGGGCCTGGC Direct Loss 0.961161747225406 0 0.67590624 0.85360485 prediction 0.922323494450812 Functional Loss - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50926238 chr19:50926238 nonsynonymous SNV 0.886 0 21 hm5C_associated_SNPs_48353 0 0 0 0 1 SPIB chr19:50926294 5'GT 50926294 Upstream 57bp
chr5 50683330 50683330 1 + C T LUSC 50683330 + 50683310 50683350 41 CCTCCCCCGCACAGGTTGTACGGGATCAAATGCGCCAAGTG CCTCCCCCGCACAGGTTGTATGGGATCAAATGCGCCAAGTG Direct Loss 0.961115229903259 0 0.86295384 0.84302706 prediction 0.922230459806518 Functional Loss - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50683330 chr5:50683330 synonymous SNV . 0 21 hm5C_associated_SNPs_48358 0 0 0 0 1 ISL1 chr5:50683324 3'AG 50683324 Downstream 7bp
chr7 129950826 129950826 1 + C T rs147568416 129950826 + 129950806 129950846 41 GCCCCAGATGCCGAGGAACTCGTGAGTCACAGCTGCCTCCC GCCCCAGATGCCGAGGAACTTGTGAGTCACAGCTGCCTCCC Direct Loss 0.961089449006185 0 0.881426 0.5076218 prediction 0.922178898012369 Functional Loss - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950826 chr7:129950826 synonymous SNV . 0 21 hm5C_associated_SNPs_48362 0 0 0 0 1 CPA4 chr7:129950826 5'GT 129950826 Upstream 1bp
chr10 81904064 81904064 1 + C T rs115786338 81904064 + 81904044 81904084 41 GCTGGCCTGGAACCTGCCCCCGGGACCCTTCAGCCCCGCTC GCTGGCCTGGAACCTGCCCCTGGGACCCTTCAGCCCCGCTC Direct Loss 0.961056925632688 0 0.9098424 0.496976 prediction 0.922113851265377 Functional Loss - PLAC9 ENSG00000189129 CDS Human protein_coding chr10:81904064 chr10:81904064 nonsynonymous SNV 0.859 0 21 hm5C_associated_SNPs_48365 0 0 0 0 2 PLAC9 chr10:81903979 3'AG 81903979 Downstream 86bp
chr10 81904064 81904064 1 + C T rs115786338 81904064 + 81904044 81904084 41 GCTGGCCTGGAACCTGCCCCCGGGACCCTTCAGCCCCGCTC GCTGGCCTGGAACCTGCCCCTGGGACCCTTCAGCCCCGCTC Direct Loss 0.961056925632688 0 0.9098424 0.496976 prediction 0.922113851265377 Functional Loss - PLAC9 ENSG00000189129 CDS Human protein_coding chr10:81904064 chr10:81904064 nonsynonymous SNV 0.859 0 21 hm5C_associated_SNPs_48365 0 0 0 0 2 PLAC9 chr10:81904099 5'GT 81904099 Upstream 36bp
chr8 99168559 99168559 1 + C T LUSC 99168559 + 99168539 99168579 41 GGATGCAGGGTGTCAAGAATCGGCAGGGCCTGAGAGGATCA GGATGCAGGGTGTCAAGAATTGGCAGGGCCTGAGAGGATCA Direct Loss 0.960996673160801 0 0.8741702 0.7000285 prediction 0.921993346321602 Functional Loss - POP1 ENSG00000104356 CDS Human protein_coding chr8:99168559 chr8:99168559 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_48369 0 0 0 0 1 POP1 chr8:99168640 5'GT 99168640 Upstream 82bp
chr5 76624876 76624876 1 + C T COAD 76624876 + 76624856 76624896 41 GGTGATCCTCGCAGTGGTTTCGCGAGTGTAAGTGCACCTCC GGTGATCCTCGCAGTGGTTTTGCGAGTGTAAGTGCACCTCC Direct Loss 0.960995857505193 0 0.22147793 0.31568748 prediction 0.921991715010386 Functional Loss - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76624876 chr5:76624876 nonsynonymous SNV 0.956 1 21 hm5C_associated_SNPs_48370 0 0 0 0 1 PDE8B chr5:76624823 3'AG 76624823 Downstream 54bp
chr17 45401215 45401215 1 + C T rs58611856 45401215 + 45401195 45401235 41 CTGGGCGGTGGCGGTGGCCGCGGCAGCACCGGCTCGACAGC CTGGGCGGTGGCGGTGGCCGTGGCAGCACCGGCTCGACAGC Direct Loss 0.960932991196407 0 0.8877347 0.8641375 prediction 0.921865982392814 Functional Loss - THCAT158 ENSG00000178852 UTR5 Human protein_coding chr17:45401215 chr17:45401215 . . 0 21 hm5C_associated_SNPs_48373 0 0 0 0 1 EFCAB13;THCAT158 chr17:45401298 5'GT 45401298 Upstream 84bp
chr4 44691392 44691392 1 + C T UCEC 44691392 + 44691372 44691412 41 ATTCCAGTGTGACCGTTCATCGGGATAGTAGCCTTGCTCTG ATTCCAGTGTGACCGTTCATTGGGATAGTAGCCTTGCTCTG Direct Loss 0.960917221936244 0 0.9275303 0.8791776 prediction 0.921834443872488 Functional Loss - GUF1 ENSG00000151806 CDS Human protein_coding chr4:44691392 chr4:44691392 nonsynonymous SNV 0.986 3 21 hm5C_associated_SNPs_48374 0 0 1 1 1 GUF1 chr4:44691303 3'AG 44691303 Downstream 90bp
chr11 67376990 67376990 1 + C T UCEC 67376990 + 67376970 67377010 41 GCAAGGACCGGGAGATCTTACGCCATGATCCTCACAAGCTG GCAAGGACCGGGAGATCTTATGCCATGATCCTCACAAGCTG Direct Loss 0.960809322890659 0 0.32188147 0.276119 prediction 0.921618645781318 Functional Loss - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67376990 chr11:67376990 nonsynonymous SNV 0.996 5 21 hm5C_associated_SNPs_48383 0 0 1 0 1 NDUFV1 chr11:67376923 3'AG 67376923 Downstream 68bp
chr19 41725315 41725315 1 + C T COAD 41725315 + 41725295 41725335 41 CCCATGGCGTGGCGGTGCCCCAGGATGGGCAGGGTCCCGCT CCCATGGCGTGGCGGTGCCCTAGGATGGGCAGGGTCCCGCT Direct Loss 0.96080338209827 0 0.8522833 0.80456746 prediction 0.92160676419654 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41725315 chr19:41725315 synonymous SNV . 0 21 hm5C_associated_SNPs_48384 0 0 1 0 1 AXL chr19:41725382 5'GT 41725382 Upstream 68bp
chr20 43160615 43160615 1 + C A rs555325390 43160615 + 43160595 43160635 41 GCACGGAGAGGCGGCGAGACCGCAGGTGAGCAGGAGCCGGG GCACGGAGAGGCGGCGAGACAGCAGGTGAGCAGGAGCCGGG Direct Loss 0.960790343521024 0 0.4713434 0.55538076 prediction 0.921580687042047 Functional Loss - PKIG ENSG00000168734 UTR5 Human protein_coding chr20:43160615 chr20:43160615 . . 0 21 hm5C_associated_SNPs_48386 0 0 1 0 1 PKIG chr20:43160619 5'GT 43160619 Upstream 5bp
chr2 241500186 241500186 1 - G C rs553554660 241500186 - 241500166 241500206 41 GCCCGCGGCTCGCGCGCTCCCGAGGAAGAGTGAGGGCGCGA GCCCGCGGCTCGCGCGCTCCGGAGGAAGAGTGAGGGCGCGA Direct Loss 0.960775675503262 0 0.9117082 0.9008421 prediction 0.921551351006523 Functional Loss - ANKMY1;DUSP28 ENSG00000144504;ENSG00000188542 CDS Human other chr2:241500186 chr2:241500186 nonsynonymous SNV 0.048 4 21 hm5C_associated_SNPs_48387 0 0 0 0 1 ANKMY1;DUSP28 chr2:241500148 5'GT 241500148 Upstream 39bp
chr9 135117313 135117313 1 + C A rs557587464 135117313 + 135117293 135117333 41 GCCAGAACGGAGGCACCTGCCTGCAGAACCAGCGCTGCGCC GCCAGAACGGAGGCACCTGCATGCAGAACCAGCGCTGCGCC Direct Loss 0.960745994912013 0 0.8976649 0.90074915 prediction 0.921491989824026 Functional Loss - NTNG2 ENSG00000196358 CDS Human protein_coding chr9:135117313 chr9:135117313 nonsynonymous SNV 0.995 1 21 hm5C_associated_SNPs_48393 0 0 0 0 1 NTNG2 chr9:135117263 3'AG 135117263 Downstream 51bp
chr17 79205672 79205672 1 - G A rs61745844 79205672 - 79205652 79205692 41 ACAGCCATTCAGGGGCCAGCCGGGAGCCGGGTGACCTGGCA ACAGCCATTCAGGGGCCAGCTGGGAGCCGGGTGACCTGGCA Direct Loss 0.96074162693967 0 0.93870735 0.927072 prediction 0.92148325387934 Functional Loss - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79205672 chr17:79205672 nonsynonymous SNV 0.294 1 21 hm5C_associated_SNPs_48395 0 0 1 0 1 TEPSIN chr17:79205647 5'GT 79205647 Upstream 26bp
chr20 57598821 57598821 1 + C T COAD 57598821 + 57598801 57598841 41 ACGGAGGGAGCCGAGCTGATCGAGAATGTCCTAGAGGTGGT ACGGAGGGAGCCGAGCTGATTGAGAATGTCCTAGAGGTGGT Direct Loss 0.960736954894817 0 0.8884016 0.37889987 prediction 0.921473909789634 Functional Loss - TUBB1 ENSG00000101162 CDS Human protein_coding chr20:57598821 chr20:57598821 synonymous SNV . 0 21 hm5C_associated_SNPs_48396 0 0 0 0 1 TUBB1 chr20:57598760 3'AG 57598760 Downstream 62bp
chr19 39398245 39398245 1 + C G rs35941401 39398245 + 39398225 39398265 41 CCTGAGCCCGAGGGCGAGGACGAGAAATCCGGCCCCTGCAG CCTGAGCCCGAGGGCGAGGAGGAGAAATCCGGCCCCTGCAG Direct Loss 0.96073017519952 0 0.8979036 0.9086442 prediction 0.92146035039904 Functional Loss - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39398245 chr19:39398245 nonsynonymous SNV 0.755 0 21 hm5C_associated_SNPs_48397 0 0 1 0 1 NFKBIB chr19:39398299 5'GT 39398299 Upstream 55bp
chr1 54423865 54423865 1 + C T COAD 54423865 + 54423845 54423885 41 TTGAGGAGATTAAGTCTTTCCGGGAGCTGACCTGCCTGGAT TTGAGGAGATTAAGTCTTTCTGGGAGCTGACCTGCCTGGAT Direct Loss 0.960558203706263 0 0.92428243 0.91585124 prediction 0.921116407412526 Functional Loss - LRRC42 ENSG00000116212 CDS Human protein_coding chr1:54423865 chr1:54423865 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_48408 0 0 0 0 2 LRRC42 chr1:54423822 3'AG 54423822 Downstream 44bp
chr1 54423865 54423865 1 + C T COAD 54423865 + 54423845 54423885 41 TTGAGGAGATTAAGTCTTTCCGGGAGCTGACCTGCCTGGAT TTGAGGAGATTAAGTCTTTCTGGGAGCTGACCTGCCTGGAT Direct Loss 0.960558203706263 0 0.92428243 0.91585124 prediction 0.921116407412526 Functional Loss - LRRC42 ENSG00000116212 CDS Human protein_coding chr1:54423865 chr1:54423865 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_48408 0 0 0 0 2 LRRC42 chr1:54423953 5'GT 54423953 Upstream 89bp
chr3 183756631 183756631 1 + C T OV 183756631 + 183756611 183756651 41 ACAAGGGCCCAGCGGGAACACGAGGCCCAGAAGCAGCACTC ACAAGGGCCCAGCGGGAACATGAGGCCCAGAAGCAGCACTC Direct Loss 0.960510164849578 0 0.8962849 0.85429406 prediction 0.921020329699156 Functional Loss - HTR3D ENSG00000186090 CDS Human protein_coding chr3:183756631 chr3:183756631 synonymous SNV . 0 21 hm5C_associated_SNPs_48412 0 0 0 0 1 HTR3D chr3:183756534 3'AG 183756534 Downstream 98bp
chr19 808577 808577 1 + C T rs148751202 808577 + 808557 808597 41 CTGAACGGGCACAAGCTGCACGGGAAGCCCATCCGCATCAC CTGAACGGGCACAAGCTGCATGGGAAGCCCATCCGCATCAC Direct Loss 0.960454839751485 0 0.52815485 0.34380287 prediction 0.92090967950297 Functional Loss - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:808577 chr19:808577 synonymous SNV . 0 21 hm5C_associated_SNPs_48417 0 0 1 0 1 PTBP1 chr19:808546 3'AG 808546 Downstream 32bp
chr10 116049170 116049170 1 + C T rs74157580 116049170 + 116049150 116049190 41 TGCGGAGGCTTGCAGGTCCCCGGGATTCCCTGATCCACGTG TGCGGAGGCTTGCAGGTCCCTGGGATTCCCTGATCCACGTG Direct Loss 0.960451641570175 0 0.9175511 0.90566677 prediction 0.920903283140351 Functional Loss - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116049170 chr10:116049170 nonsynonymous SNV 0.878 1 21 hm5C_associated_SNPs_48420 0 0 0 0 1 VWA2 chr10:116049248 5'GT 116049248 Upstream 79bp
chr19 41822663 41822663 1 + C T STAD 41822663 + 41822643 41822683 41 TCTACTGTGCTGAGGTGGCCCGGCAGGGCACTGCCCGGCCC TCTACTGTGCTGAGGTGGCCTGGCAGGGCACTGCCCGGCCC Direct Loss 0.960448815291402 0 0.3324064 0.4214851 prediction 0.920897630582803 Functional Loss - CCDC97 ENSG00000142039 CDS Human protein_coding chr19:41822663 chr19:41822663 nonsynonymous SNV 0.994 3 21 hm5C_associated_SNPs_48421 0 0 1 0 1 CCDC97 chr19:41822744 5'GT 41822744 Upstream 82bp
chr1 236925788 236925788 1 + C T LUAD 236925788 + 236925768 236925808 41 TCCTGGCGGAGGAGCTGCGTCGGGAGCTGCCCCCGGATCAG TCCTGGCGGAGGAGCTGCGTTGGGAGCTGCCCCCGGATCAG Direct Loss 0.960408875657846 0 0.9024092 0.86686707 prediction 0.920817751315693 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236925788 chr1:236925788 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_48427 0 0 0 0 1 ACTN2 chr1:236925761 3'AG 236925761 Downstream 28bp
chr20 31647768 31647768 1 + C G BLCA 31647768 + 31647748 31647788 41 GGTGGCGCTGGCCGTGAGCTCAAGGGGCACACCCATCCTTA GGTGGCGCTGGCCGTGAGCTGAAGGGGCACACCCATCCTTA Direct Loss 0.960404702101156 0 0.9298408 0.83591175 prediction 0.920809404202311 Functional Loss - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31647768 chr20:31647768 stopgain 0.048 0 21 hm5C_associated_SNPs_48429 0 0 0 0 1 BPIFB3 chr20:31647697 3'AG 31647697 Downstream 72bp
chr12 54396248 54396248 1 + C A HNSC 54396248 + 54396228 54396268 41 AACTGGATTCACGCCCGCTCCACGAGGAAGAAGCGCTGCCC AACTGGATTCACGCCCGCTCAACGAGGAAGAAGCGCTGCCC Direct Loss 0.960404434238175 0 0.28164172 0.2787574 prediction 0.92080886847635 Functional Loss - HOXC9 ENSG00000180806 CDS Human protein_coding chr12:54396248 chr12:54396248 synonymous SNV . 0 21 hm5C_associated_SNPs_48430 0 0 1 0 1 HOXC9 chr12:54396214 3'AG 54396214 Downstream 35bp
chr16 88781140 88781140 1 + C T rs2340976 88781140 + 88781120 88781160 41 CGCTGTGGCCAGGGGGCCTGCAGGAGGTGAGTCCCTGTCCC CGCTGTGGCCAGGGGGCCTGTAGGAGGTGAGTCCCTGTCCC Direct Loss 0.96039852005539 0 0.9140213 0.9116008 prediction 0.92079704011078 Functional Loss - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781140 chr16:88781140 synonymous SNV . 0 21 hm5C_associated_SNPs_48431 0 0 1 0 1 CTU2 chr16:88781145 5'GT 88781145 Upstream 6bp
chr1 41289853 41289853 1 + C T rs571352655 41289853 + 41289833 41289873 41 GTGCGGCGGGCGCCGGTACCCGACGGAGCACCCTCCCGTTA GTGCGGCGGGCGCCGGTACCTGACGGAGCACCCTCCCGTTA Direct Loss 0.960325734607776 0 0.71561736 0.5839322 prediction 0.920651469215553 Functional Loss - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41289853 chr1:41289853 synonymous SNV . 0 21 hm5C_associated_SNPs_48436 0 0 0 0 2 KCNQ4 chr1:41289769 3'AG 41289769 Downstream 85bp
chr1 41289853 41289853 1 + C T rs571352655 41289853 + 41289833 41289873 41 GTGCGGCGGGCGCCGGTACCCGACGGAGCACCCTCCCGTTA GTGCGGCGGGCGCCGGTACCTGACGGAGCACCCTCCCGTTA Direct Loss 0.960325734607776 0 0.71561736 0.5839322 prediction 0.920651469215553 Functional Loss - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41289853 chr1:41289853 synonymous SNV . 0 21 hm5C_associated_SNPs_48436 0 0 0 0 2 KCNQ4 chr1:41289930 5'GT 41289930 Upstream 78bp
chr3 122296663 122296663 1 + C G rs59971113 122296663 + 122296643 122296683 41 GCCGGCCGGGAACCGTGGGGCGCGGAAGGCCTCCCGGCGCT GCCGGCCGGGAACCGTGGGGGGCGGAAGGCCTCCCGGCGCT Direct Loss 0.960323906732378 0 0.8780037 0.9099916 prediction 0.920647813464756 Functional Loss - PARP15 ENSG00000173200 CDS Human protein_coding chr3:122296663 chr3:122296663 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_48437 0 0 0 0 1 PARP15 chr3:122296700 5'GT 122296700 Upstream 38bp
chr12 52369191 52369191 1 + C T rs114638064 52369191 + 52369171 52369211 41 AAAGTGGAGCTGGTCCCTGCCGGGAAGCCCTTCTACTGCCT AAAGTGGAGCTGGTCCCTGCTGGGAAGCCCTTCTACTGCCT Direct Loss 0.960273141815256 0 0.9164226 0.8380197 prediction 0.920546283630512 Functional Loss - ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52369191 chr12:52369191 synonymous SNV . 0 21 hm5C_associated_SNPs_48443 0 0 0 0 1 ACVR1B chr12:52369288 5'GT 52369288 Upstream 98bp
chr19 10202240 10202240 1 + C A UCEC 10202240 + 10202220 10202260 41 TCCTCCCCCCGCGCTGGGACCGGGACCCGGATCGCCGCAGC TCCTCCCCCCGCGCTGGGACAGGGACCCGGATCGCCGCAGC Direct Loss 0.960261535818349 0 0.89797914 0.5705483 prediction 0.920523071636698 Functional Loss - C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10202240 chr19:10202240 synonymous SNV . 0 21 hm5C_associated_SNPs_48445 0 0 0 0 2 C19orf66 chr19:10202152 3'AG 10202152 Downstream 89bp
chr19 10202240 10202240 1 + C A UCEC 10202240 + 10202220 10202260 41 TCCTCCCCCCGCGCTGGGACCGGGACCCGGATCGCCGCAGC TCCTCCCCCCGCGCTGGGACAGGGACCCGGATCGCCGCAGC Direct Loss 0.960261535818349 0 0.89797914 0.5705483 prediction 0.920523071636698 Functional Loss - C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10202240 chr19:10202240 synonymous SNV . 0 21 hm5C_associated_SNPs_48445 0 0 0 0 2 C19orf66 chr19:10202306 5'GT 10202306 Upstream 67bp
chr9 96438029 96438029 1 + C T STAD 96438029 + 96438009 96438049 41 GGTACACGGGTGGCTTCCATCGAGACCGGGCTGGCGGCTGC GGTACACGGGTGGCTTCCATTGAGACCGGGCTGGCGGCTGC Direct Loss 0.960235871031175 0 0.91880834 0.7594747 prediction 0.92047174206235 Functional Loss - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96438029 chr9:96438029 synonymous SNV . 0 21 hm5C_associated_SNPs_48449 0 0 1 0 2 PHF2 chr9:96437962 3'AG 96437962 Downstream 68bp
chr9 96438029 96438029 1 + C T STAD 96438029 + 96438009 96438049 41 GGTACACGGGTGGCTTCCATCGAGACCGGGCTGGCGGCTGC GGTACACGGGTGGCTTCCATTGAGACCGGGCTGGCGGCTGC Direct Loss 0.960235871031175 0 0.91880834 0.7594747 prediction 0.92047174206235 Functional Loss - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96438029 chr9:96438029 synonymous SNV . 0 21 hm5C_associated_SNPs_48449 0 0 1 0 2 PHF2 chr9:96438071 5'GT 96438071 Upstream 43bp
chr7 100320333 100320333 1 + C T STAD 100320333 + 100320313 100320353 41 GCAGGGCCTGGCCCTGCTGTCGGAAGCTGTCCTGCGGGGCC GCAGGGCCTGGCCCTGCTGTTGGAAGCTGTCCTGCGGGGCC Direct Loss 0.960230274921956 0 0.93218327 0.8051163 prediction 0.920460549843912 Functional Loss - EPO ENSG00000130427 CDS Human protein_coding chr7:100320333 chr7:100320333 nonsynonymous SNV 0.984 0 21 hm5C_associated_SNPs_48451 0 0 0 0 1 EPO chr7:100320287 3'AG 100320287 Downstream 47bp
chr18 61225678 61225678 1 + C G CESC 61225678 + 61225658 61225698 41 AAGTGCTGGCTGACAGCTCTCTGGAGGGGCAGAAAAAAACG AAGTGCTGGCTGACAGCTCTGTGGAGGGGCAGAAAAAAACG Direct Loss 0.960205581130882 0 0.43347168 0.32027382 prediction 0.920411162261763 Functional Loss - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61225678 chr18:61225678 nonsynonymous SNV 0.960 1 21 hm5C_associated_SNPs_48454 0 0 0 0 2 SERPINB12 chr18:61225585 3'AG 61225585 Downstream 94bp
chr18 61225678 61225678 1 + C G CESC 61225678 + 61225658 61225698 41 AAGTGCTGGCTGACAGCTCTCTGGAGGGGCAGAAAAAAACG AAGTGCTGGCTGACAGCTCTGTGGAGGGGCAGAAAAAAACG Direct Loss 0.960205581130882 0 0.43347168 0.32027382 prediction 0.920411162261763 Functional Loss - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61225678 chr18:61225678 nonsynonymous SNV 0.960 1 21 hm5C_associated_SNPs_48454 0 0 0 0 2 SERPINB12 chr18:61225719 5'GT 61225719 Upstream 42bp
chr19 50983930 50983930 1 + C G rs10409679 50983930 + 50983910 50983950 41 GTGTCGGTGGTGACGCACCCCGGGGGCTGCCGGGGCCATGA GTGTCGGTGGTGACGCACCCGGGGGGCTGCCGGGGCCATGA Direct Loss 0.960197819207812 0 0.89786804 0.90726733 prediction 0.920395638415624 Functional Loss - EMC10 ENSG00000161671 CDS Human protein_coding chr19:50983930 chr19:50983930 synonymous SNV . 0 21 hm5C_associated_SNPs_48455 0 0 0 0 1 EMC10 chr19:50983838 3'AG 50983838 Downstream 93bp
chr15 45879699 45879699 1 + C A UCEC 45879699 + 45879679 45879719 41 TGACACGGCCACCCTACTGCCTGGAGGCCGGGGAGCCGACG TGACACGGCCACCCTACTGCATGGAGGCCGGGGAGCCGACG Direct Loss 0.960186750790382 0 0.66525745 0.6487917 prediction 0.920373501580764 Functional Loss - BLOC1S6 ENSG00000104164 CDS Human protein_coding chr15:45879699 chr15:45879699 nonsynonymous SNV 0.053 1 21 hm5C_associated_SNPs_48457 0 0 1 0 1 BLOC1S6 chr15:45879723 5'GT 45879723 Upstream 25bp
chr20 45354882 45354882 1 + C T BRCA 45354882 + 45354862 45354902 41 CTGGGCCCCCTCTGCCCGCTCGGGGGCATGCACTGCTGCGC CTGGGCCCCCTCTGCCCGCTTGGGGGCATGCACTGCTGCGC Direct Loss 0.960144313746701 0 0.9563393 0.92918664 prediction 0.920288627493401 Functional Loss - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45354882 chr20:45354882 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_48461 0 0 0 0 1 SLC2A10 chr20:45354963 5'GT 45354963 Upstream 82bp
chr8 87111268 87111268 1 + C T LGG 87111268 + 87111248 87111288 41 GCTACCTGGAGGGCCTGGTTCGAGGATGCAAGGCCAGCCTC GCTACCTGGAGGGCCTGGTTTGAGGATGCAAGGCCAGCCTC Direct Loss 0.9601329490198 0 0.9489823 0.9262916 prediction 0.920265898039599 Functional Loss - ATP6V0D2 ENSG00000147614 CDS Human protein_coding chr8:87111268 chr8:87111268 stopgain 0.966 1 21 hm5C_associated_SNPs_48462 0 0 0 0 1 ATP6V0D2 chr8:87111337 5'GT 87111337 Upstream 70bp
chr1 156594436 156594436 1 + C A LUSC 156594436 + 156594416 156594456 41 TGTAACGCGGGCTGGCTGCTCGAGGGCTCCGTGCGCTACCC TGTAACGCGGGCTGGCTGCTAGAGGGCTCCGTGCGCTACCC Direct Loss 0.960128012905199 0 0.90910363 0.8075156 prediction 0.920256025810399 Functional Loss - HAPLN2 ENSG00000132702 CDS Human protein_coding chr1:156594436 chr1:156594436 synonymous SNV . 0 21 hm5C_associated_SNPs_48463 0 0 1 0 1 HAPLN2 chr1:156594393 3'AG 156594393 Downstream 44bp
chr15 64426932 64426932 1 + C T CESC 64426932 + 64426912 64426952 41 AAGCCACACTGCAGAAGAAGCGGGAGGCCGAGGCTCGGCTG AAGCCACACTGCAGAAGAAGTGGGAGGCCGAGGCTCGGCTG Direct Loss 0.960116099518747 0 0.94016707 0.933863 prediction 0.920232199037495 Functional Loss - SNX1 ENSG00000028528 CDS Human protein_coding chr15:64426932 chr15:64426932 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_48466 0 0 1 0 2 SNX1 chr15:64426863 3'AG 64426863 Downstream 70bp
chr15 64426932 64426932 1 + C T CESC 64426932 + 64426912 64426952 41 AAGCCACACTGCAGAAGAAGCGGGAGGCCGAGGCTCGGCTG AAGCCACACTGCAGAAGAAGTGGGAGGCCGAGGCTCGGCTG Direct Loss 0.960116099518747 0 0.94016707 0.933863 prediction 0.920232199037495 Functional Loss - SNX1 ENSG00000028528 CDS Human protein_coding chr15:64426932 chr15:64426932 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_48466 0 0 1 0 2 SNX1 chr15:64427006 5'GT 64427006 Upstream 75bp
chr12 81101955 81101955 1 + C T BLCA 81101955 + 81101935 81101975 41 ACCTGCTGCACCGGCTGGATCAGCAGGAGAAGATGCAGGAG ACCTGCTGCACCGGCTGGATTAGCAGGAGAAGATGCAGGAG Direct Loss 0.960099941035948 0 0.9000593 0.8554683 prediction 0.920199882071896 Functional Loss - MYF6 ENSG00000111046 CDS Human protein_coding chr12:81101955 chr12:81101955 stopgain 1.000 1 21 hm5C_associated_SNPs_48467 0 0 0 0 1 MYF6 chr12:81102017 5'GT 81102017 Upstream 63bp
chr12 122361822 122361822 1 + C T UCEC 122361822 + 122361802 122361842 41 AGTCCAAAGCAGGGATCTCCCGGGAGTCACTGGTGTCCAGC AGTCCAAAGCAGGGATCTCCTGGGAGTCACTGGTGTCCAGC Direct Loss 0.960068569961167 0 0.937261 0.90005815 prediction 0.920137139922333 Functional Loss - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122361822 chr12:122361822 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_48469 0 0 0 0 1 WDR66 chr12:122361896 5'GT 122361896 Upstream 75bp
chr6 3850118 3850118 1 + C T KICH 3850118 + 3850098 3850138 41 TCAAGAAGCGCGAAAGGCAGCGGGAGCAGATGGAGGTGCTG TCAAGAAGCGCGAAAGGCAGTGGGAGCAGATGGAGGTGCTG Direct Loss 0.960025756689201 0 0.89729077 0.8129387 prediction 0.920051513378401 Functional Loss - FAM50B ENSG00000145945 CDS Human sense_overlapping chr6:3850118 chr6:3850118 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_48473 0 0 0 0 1 FAM50B chr6:3850023 3'AG 3850023 Downstream 96bp
chr19 39788886 39788886 1 + C A LUSC 39788886 + 39788866 39788906 41 CCACAGCAGGGCCCAGGCCCCGGGGCCGCCTCCACCACTGG CCACAGCAGGGCCCAGGCCCAGGGGCCGCCTCCACCACTGG Direct Loss 0.960020427796099 0 0.9360911 0.924698 prediction 0.920040855592198 Functional Loss - IFNL1 ENSG00000182393 CDS Human protein_coding chr19:39788886 chr19:39788886 synonymous SNV . 0 21 hm5C_associated_SNPs_48475 0 0 0 0 2 IFNL1 chr19:39788853 3'AG 39788853 Downstream 34bp
chr19 39788886 39788886 1 + C A LUSC 39788886 + 39788866 39788906 41 CCACAGCAGGGCCCAGGCCCCGGGGCCGCCTCCACCACTGG CCACAGCAGGGCCCAGGCCCAGGGGCCGCCTCCACCACTGG Direct Loss 0.960020427796099 0 0.9360911 0.924698 prediction 0.920040855592198 Functional Loss - IFNL1 ENSG00000182393 CDS Human protein_coding chr19:39788886 chr19:39788886 synonymous SNV . 0 21 hm5C_associated_SNPs_48475 0 0 0 0 2 IFNL1 chr19:39788936 5'GT 39788936 Upstream 51bp
chr16 68772218 68772218 1 + C T BRCA 68772218 + 68772198 68772238 41 AGGTCTCCTCTTGGCTCTGCCAGGAGCCGGAGCCCTGCCAC AGGTCTCCTCTTGGCTCTGCTAGGAGCCGGAGCCCTGCCAC Direct Loss 0.960008924777461 0 0.9262074 0.9086274 prediction 0.920017849554923 Functional Loss - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68772218 chr16:68772218 stopgain 0.645 0 21 hm5C_associated_SNPs_48476 0 0 1 0 2 CDH1 chr16:68772200 3'AG 68772200 Downstream 19bp
chr16 68772218 68772218 1 + C T BRCA 68772218 + 68772198 68772238 41 AGGTCTCCTCTTGGCTCTGCCAGGAGCCGGAGCCCTGCCAC AGGTCTCCTCTTGGCTCTGCTAGGAGCCGGAGCCCTGCCAC Direct Loss 0.960008924777461 0 0.9262074 0.9086274 prediction 0.920017849554923 Functional Loss - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68772218 chr16:68772218 stopgain 0.645 0 21 hm5C_associated_SNPs_48476 0 0 1 0 2 CDH1 chr16:68772314 5'GT 68772314 Upstream 97bp
chr3 52828887 52828887 1 + C T rs528961799 52828887 + 52828867 52828907 41 CTTGGCAGCCTCTGGCTTCCCGAGAAGCCCCTTTCGGCTGC CTTGGCAGCCTCTGGCTTCCTGAGAAGCCCCTTTCGGCTGC Direct Loss 0.959970200436658 0 0.8497339 0.6083288 prediction 0.919940400873316 Functional Loss - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52828887 chr3:52828887 nonsynonymous SNV 0.143 0 21 hm5C_associated_SNPs_48479 0 0 1 0 1 ITIH3 chr3:52828912 5'GT 52828912 Upstream 26bp
chr3 32409378 32409378 1 + C T rs138983063 32409378 + 32409358 32409398 41 CCCCAGGGCCTGTGCTTTAACGGCAGTGCCTTCGTCTTGTA CCCCAGGGCCTGTGCTTTAATGGCAGTGCCTTCGTCTTGTA Direct Loss 0.959958898248572 0 0.8751643 0.38889438 prediction 0.919917796497145 Functional Loss - CMTM8 ENSG00000170293 CDS Human protein_coding chr3:32409378 chr3:32409378 synonymous SNV . 0 21 hm5C_associated_SNPs_48480 0 0 0 0 1 CMTM8 chr3:32409364 3'AG 32409364 Downstream 15bp
chr1 9781865 9781865 1 + C A STAD 9781865 + 9781845 9781885 41 CCCTGCGCTTCGGCCTCATCCTGGAGGCCTACTGCAGGGGC CCCTGCGCTTCGGCCTCATCATGGAGGCCTACTGCAGGGGC Direct Loss 0.959947305376095 0 0.8953382 0.91298044 prediction 0.919894610752189 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9781865 chr1:9781865 nonsynonymous SNV 0.992 0 21 hm5C_associated_SNPs_48481 0 0 0 0 2 PIK3CD chr1:9781819 3'AG 9781819 Downstream 47bp
chr1 9781865 9781865 1 + C A STAD 9781865 + 9781845 9781885 41 CCCTGCGCTTCGGCCTCATCCTGGAGGCCTACTGCAGGGGC CCCTGCGCTTCGGCCTCATCATGGAGGCCTACTGCAGGGGC Direct Loss 0.959947305376095 0 0.8953382 0.91298044 prediction 0.919894610752189 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9781865 chr1:9781865 nonsynonymous SNV 0.992 0 21 hm5C_associated_SNPs_48481 0 0 0 0 2 PIK3CD chr1:9781918 5'GT 9781918 Upstream 54bp
chr11 65721175 65721175 1 + C T LUAD 65721175 + 65721155 65721195 41 ACCCAGAGGGAGCCGGGGCCCTGGGGCGGCCCAGCGCAAGC ACCCAGAGGGAGCCGGGGCCTTGGGGCGGCCCAGCGCAAGC Direct Loss 0.959942682722676 0 0.8230033 0.8593427 prediction 0.919885365445351 Functional Loss - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65721175 chr11:65721175 unknown 0.001 0 21 hm5C_associated_SNPs_48482 0 0 0 0 1 TSGA10IP chr11:65721208 5'GT 65721208 Upstream 34bp
chr7 141833932 141833932 1 + C T CESC 141833932 + 141833912 141833952 41 AGACTTGGCCCATCTTCACCCGGGACGCTACCCCCACCGAG AGACTTGGCCCATCTTCACCTGGGACGCTACCCCCACCGAG Direct Loss 0.959924769565681 0 0.9289865 0.8993869 prediction 0.919849539131361 Functional Loss - MGAM2 ENSG00000257743 CDS Human protein_coding chr7:141833932 chr7:141833932 nonsynonymous SNV 0.233 4 21 hm5C_associated_SNPs_48483 0 0 0 0 1 MGAM2 chr7:141833952 5'GT 141833952 Upstream 21bp
chr1 16356971 16356971 1 + C T rs375233250 16356971 + 16356951 16356991 41 GGCAGGGGCTGCAGCCTTCTCAGGGGCTGTGACCCACACCA GGCAGGGGCTGCAGCCTTCTTAGGGGCTGTGACCCACACCA Direct Loss 0.959820857796434 0 0.9639883 0.9447517 prediction 0.919641715592868 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16356971 chr1:16356971 nonsynonymous SNV 0.971 5 21 hm5C_associated_SNPs_48492 0 0 0 0 1 CLCNKA chr1:16356956 3'AG 16356956 Downstream 16bp
chr20 49493110 49493110 1 + C T SKCM 49493110 + 49493090 49493130 41 CTGTGGACGCCGGGGAAGCACAGCACCACCCCCGCACCTGC CTGTGGACGCCGGGGAAGCATAGCACCACCCCCGCACCTGC Direct Loss 0.959803759888686 0 0.30062598 0.2558936 prediction 0.919607519777373 Functional Loss - BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49493110 chr20:49493110 stopgain 0.000 0 21 hm5C_associated_SNPs_48495 0 0 0 0 1 BCAS4 chr20:49493023 3'AG 49493023 Downstream 88bp
chr16 818657 818657 1 + C A rs143023160 818657 + 818637 818677 41 TCTCTCTGTAGAGGCCCTCTCGGGGACGCCCTGCCTCCTAG TCTCTCTGTAGAGGCCCTCTAGGGGACGCCCTGCCTCCTAG Direct Loss 0.959753865898411 0 0.95915246 0.87423253 prediction 0.919507731796823 Functional Loss - MSLN ENSG00000102854 CDS Human protein_coding chr16:818657 chr16:818657 stopgain 0.113 0 21 hm5C_associated_SNPs_48497 0 0 0 0 1 MSLN chr16:818648 3'AG 818648 Downstream 10bp
chr17 78210832 78210832 1 + C A UCEC 78210832 + 78210812 78210852 41 GGAGACAGCTGAGGGGCTCCCTCCAGTCCGGATCCCGCCCT GGAGACAGCTGAGGGGCTCCATCCAGTCCGGATCCCGCCCT Direct Loss 0.959690295388649 0 0.96435654 0.4963187 prediction 0.919380590777299 Functional Loss - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78210832 chr17:78210832 nonsynonymous SNV 0.796 5 21 hm5C_associated_SNPs_48503 0 0 1 0 1 SLC26A11 chr17:78210902 5'GT 78210902 Upstream 71bp
chr1 57378088 57378088 1 + C T DLBC 57378088 + 57378068 57378108 41 GCCCACAGATGCAGCCTATCCACGAGGTGCTGCGGCACACA GCCCACAGATGCAGCCTATCTACGAGGTGCTGCGGCACACA Direct Loss 0.959662019312632 0 0.6218725 0.75832295 prediction 0.919324038625265 Functional Loss - C8A ENSG00000157131 CDS Human protein_coding chr1:57378088 chr1:57378088 nonsynonymous SNV 0.011 1 21 hm5C_associated_SNPs_48509 0 0 1 0 1 C8A chr1:57378076 3'AG 57378076 Downstream 13bp
chr17 8219200 8219200 1 + C T BLCA 8219200 + 8219180 8219220 41 ATGTGCGGAACCAGCAGTATCAGGAGGAGACCTACAGCCGC ATGTGCGGAACCAGCAGTATTAGGAGGAGACCTACAGCCGC Direct Loss 0.959655245031081 0 0.9312905 0.90922654 prediction 0.919310490062163 Functional Loss - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8219200 chr17:8219200 stopgain 0.999 1 21 hm5C_associated_SNPs_48510 0 0 0 0 1 ARHGEF15 chr17:8219225 5'GT 8219225 Upstream 26bp
chr19 17392763 17392763 1 + C T rs112925678 17392763 + 17392743 17392783 41 CCCGCCTGGCTCGCAGGTTGCGGGATGCGCTGCGGGAGGAG CCCGCCTGGCTCGCAGGTTGTGGGATGCGCTGCGGGAGGAG Direct Loss 0.959653661430521 0 0.9265677 0.90176046 prediction 0.919307322861042 Functional Loss - ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17392763 chr19:17392763 nonsynonymous SNV 0.003 2 21 hm5C_associated_SNPs_48511 0 0 0 0 1 ANKLE1 chr19:17392791 5'GT 17392791 Upstream 29bp
chr1 234509333 234509333 1 + C G BLCA 234509333 + 234509313 234509353 41 GACCCTGCAGTGGCAGGACTCGGCACCGCGCCCTCCACCGC GACCCTGCAGTGGCAGGACTGGGCACCGCGCCCTCCACCGC Direct Loss 0.959602669592451 0 0.9069902 0.7929306 prediction 0.919205339184902 Functional Loss - COA6 ENSG00000168275 CDS Human protein_coding chr1:234509333 chr1:234509333 nonsynonymous SNV 0.003 1 21 hm5C_associated_SNPs_48514 0 0 1 0 1 COA6 chr1:234509424 5'GT 234509424 Upstream 92bp
chr7 79082417 79082417 1 + C T COAD 79082417 + 79082397 79082437 41 CCTGATGGTGAGCCCCGCCACGGGGGTCTCGTTCACCTCCA CCTGATGGTGAGCCCCGCCATGGGGGTCTCGTTCACCTCCA Direct Loss 0.959557581082333 0 0.9438541 0.89088476 prediction 0.919115162164665 Functional Loss - MAGI2 ENSG00000187391 CDS Human protein_coding chr7:79082417 chr7:79082417 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_48520 0 0 1 0 1 MAGI2 chr7:79082507 5'GT 79082507 Upstream 91bp
chr4 189065255 189065255 1 + C T GBM 189065255 + 189065235 189065275 41 GCTGAGTCTGTGCCGCATCACGGGAATGAAGGAGATGCTAA GCTGAGTCTGTGCCGCATCATGGGAATGAAGGAGATGCTAA Direct Loss 0.959543666872606 0 0.5273786 0.32108134 prediction 0.919087333745213 Functional Loss - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189065255 chr4:189065255 nonsynonymous SNV 0.981 3 21 hm5C_associated_SNPs_48522 0 0 0 0 2 TRIML1 chr4:189065190 3'AG 189065190 Downstream 66bp
chr4 189065255 189065255 1 + C T GBM 189065255 + 189065235 189065275 41 GCTGAGTCTGTGCCGCATCACGGGAATGAAGGAGATGCTAA GCTGAGTCTGTGCCGCATCATGGGAATGAAGGAGATGCTAA Direct Loss 0.959543666872606 0 0.5273786 0.32108134 prediction 0.919087333745213 Functional Loss - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189065255 chr4:189065255 nonsynonymous SNV 0.981 3 21 hm5C_associated_SNPs_48522 0 0 0 0 2 TRIML1 chr4:189065287 5'GT 189065287 Upstream 33bp
chr16 1545435 1545435 1 + C T UCEC 1545435 + 1545415 1545455 41 TGCTGATGGAGGCGCAGTGTCGGCAGCAGACGCAGCCCGGC TGCTGATGGAGGCGCAGTGTTGGCAGCAGACGCAGCCCGGC Direct Loss 0.959518828334268 0 0.89558035 0.6992737 prediction 0.919037656668536 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1545435 chr16:1545435 nonsynonymous SNV 0.021 1 21 hm5C_associated_SNPs_48525 0 0 0 0 1 TELO2 chr16:1545347 3'AG 1545347 Downstream 89bp
chr1 207073657 207073657 1 + C A LUSC 207073657 + 207073637 207073677 41 AAGCAAGCTCAGGATAACATCACGAGTGCCCGGCTGCTGCA AAGCAAGCTCAGGATAACATAACGAGTGCCCGGCTGCTGCA Direct Loss 0.959491630370429 0 0.7545736 0.6541666 prediction 0.918983260740857 Functional Loss - IL24 ENSG00000162892 CDS Human protein_coding chr1:207073657 chr1:207073657 stopgain 0.428 0 21 hm5C_associated_SNPs_48530 0 0 0 0 2 IL24 chr1:207073640 3'AG 207073640 Downstream 18bp
chr1 207073657 207073657 1 + C A LUSC 207073657 + 207073637 207073677 41 AAGCAAGCTCAGGATAACATCACGAGTGCCCGGCTGCTGCA AAGCAAGCTCAGGATAACATAACGAGTGCCCGGCTGCTGCA Direct Loss 0.959491630370429 0 0.7545736 0.6541666 prediction 0.918983260740857 Functional Loss - IL24 ENSG00000162892 CDS Human protein_coding chr1:207073657 chr1:207073657 stopgain 0.428 0 21 hm5C_associated_SNPs_48530 0 0 0 0 2 IL24 chr1:207073702 5'GT 207073702 Upstream 46bp
chr16 28909674 28909674 1 + C T ESCA 28909674 + 28909654 28909694 41 TCAAGGAGTGGGGCACTGGCCGGGACACCCTGCGCTGCTTG TCAAGGAGTGGGGCACTGGCTGGGACACCCTGCGCTGCTTG Direct Loss 0.9594539462473 0 0.9220687 0.89051026 prediction 0.9189078924946 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28909674 chr16:28909674 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_48535 0 0 1 0 1 ATP2A1 chr16:28909772 5'GT 28909772 Upstream 99bp
chr1 248023976 248023976 1 + C A LUSC 248023976 + 248023956 248023996 41 AGTTGGAGGACGCCTTGACTCAGGAGGCCAACGTGGGGAAA AGTTGGAGGACGCCTTGACTAAGGAGGCCAACGTGGGGAAA Direct Loss 0.959448095601011 0 0.9043453 0.88158906 prediction 0.918896191202022 Functional Loss - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248023976 chr1:248023976 nonsynonymous SNV 0.180 0 21 hm5C_associated_SNPs_48536 0 0 0 0 2 TRIM58 chr1:248023919 3'AG 248023919 Downstream 58bp
chr1 248023976 248023976 1 + C A LUSC 248023976 + 248023956 248023996 41 AGTTGGAGGACGCCTTGACTCAGGAGGCCAACGTGGGGAAA AGTTGGAGGACGCCTTGACTAAGGAGGCCAACGTGGGGAAA Direct Loss 0.959448095601011 0 0.9043453 0.88158906 prediction 0.918896191202022 Functional Loss - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248023976 chr1:248023976 nonsynonymous SNV 0.180 0 21 hm5C_associated_SNPs_48536 0 0 0 0 2 TRIM58 chr1:248024014 5'GT 248024014 Upstream 39bp
chr14 105398391 105398391 1 + C T BLCA 105398391 + 105398371 105398411 41 GCGCTGCGGGCGGCAGCCTTCGGCAAGGGCGTGCGCGTGCG GCGCTGCGGGCGGCAGCCTTTGGCAAGGGCGTGCGCGTGCG Direct Loss 0.959438244513566 0 0.85332894 0.46226418 prediction 0.918876489027131 Functional Loss - PLD4 ENSG00000166428 CDS Human protein_coding chr14:105398391 chr14:105398391 synonymous SNV . 0 21 hm5C_associated_SNPs_48539 0 0 0 0 1 PLD4 chr14:105398349 3'AG 105398349 Downstream 43bp
chr2 113763616 113763616 1 + C T BLCA 113763616 + 113763596 113763636 41 ATCATCGGGTGTGGGTTCTTCAGGACCAGACGCTCATAGCA ATCATCGGGTGTGGGTTCTTTAGGACCAGACGCTCATAGCA Direct Loss 0.959349975092673 0 0.8326637 0.4443221 prediction 0.918699950185345 Functional Loss - IL36A ENSG00000136694 CDS Human protein_coding chr2:113763616 chr2:113763616 stopgain 0.032 0 21 hm5C_associated_SNPs_48544 0 0 0 0 2 IL36A chr2:113763551 3'AG 113763551 Downstream 66bp
chr2 113763616 113763616 1 + C T BLCA 113763616 + 113763596 113763636 41 ATCATCGGGTGTGGGTTCTTCAGGACCAGACGCTCATAGCA ATCATCGGGTGTGGGTTCTTTAGGACCAGACGCTCATAGCA Direct Loss 0.959349975092673 0 0.8326637 0.4443221 prediction 0.918699950185345 Functional Loss - IL36A ENSG00000136694 CDS Human protein_coding chr2:113763616 chr2:113763616 stopgain 0.032 0 21 hm5C_associated_SNPs_48544 0 0 0 0 2 IL36A chr2:113763664 5'GT 113763664 Upstream 49bp
chr16 29857200 29857200 1 + C A UCEC 29857200 + 29857180 29857220 41 CCAGGCATGAGGCTCAGAGACTGGAGCAGGAAGCCCGCGGC CCAGGCATGAGGCTCAGAGAATGGAGCAGGAAGCCCGCGGC Direct Loss 0.959349005403135 0 0.853075 0.83742034 prediction 0.918698010806269 Functional Loss - MVP ENSG00000013364 CDS Human protein_coding chr16:29857200 chr16:29857200 nonsynonymous SNV 0.973 4 21 hm5C_associated_SNPs_48545 0 0 0 0 1 MVP chr16:29857184 3'AG 29857184 Downstream 17bp
chr16 55361540 55361540 1 + C T rs146664655 55361540 + 55361520 55361560 41 GGCGCCGGTCGCCGAAAGAACGCGACCCGGGAGACCACCAG GGCGCCGGTCGCCGAAAGAATGCGACCCGGGAGACCACCAG Direct Loss 0.959255066048972 0 0.7361946 0.7523656 prediction 0.918510132097945 Functional Loss - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55361540 chr16:55361540 synonymous SNV . 0 21 hm5C_associated_SNPs_48553 0 0 0 0 1 IRX6 chr16:55361498 3'AG 55361498 Downstream 43bp
chr7 139102372 139102372 1 + C T UCEC 139102372 + 139102352 139102392 41 GATCCAAATCTCGGGAGAAACGCCATCGCCACAGGTCCCGC GATCCAAATCTCGGGAGAAATGCCATCGCCACAGGTCCCGC Direct Loss 0.959228638104912 0 0.29788548 0.36939162 prediction 0.918457276209824 Functional Loss - C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139102372 chr7:139102372 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_48555 0 0 1 0 1 C7orf55-LUC7L2;LUC7L2 chr7:139102284 3'AG 139102284 Downstream 89bp
chr2 139307793 139307793 1 + C T UCEC 139307793 + 139307773 139307813 41 ACAATAAAGTGGTGATGTCTCGGGAACCCACCCCACCTCTA ACAATAAAGTGGTGATGTCTTGGGAACCCACCCCACCTCTA Direct Loss 0.959213243262516 0 0.9524543 0.5628276 prediction 0.918426486525032 Functional Loss - SPOPL ENSG00000144228 CDS Human protein_coding chr2:139307793 chr2:139307793 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_48556 0 0 1 0 2 SPOPL chr2:139307727 3'AG 139307727 Downstream 67bp
chr2 139307793 139307793 1 + C T UCEC 139307793 + 139307773 139307813 41 ACAATAAAGTGGTGATGTCTCGGGAACCCACCCCACCTCTA ACAATAAAGTGGTGATGTCTTGGGAACCCACCCCACCTCTA Direct Loss 0.959213243262516 0 0.9524543 0.5628276 prediction 0.918426486525032 Functional Loss - SPOPL ENSG00000144228 CDS Human protein_coding chr2:139307793 chr2:139307793 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_48556 0 0 1 0 2 SPOPL chr2:139307864 5'GT 139307864 Upstream 72bp
chr4 74702569 74702569 1 + C G LGG 74702569 + 74702549 74702589 41 CTGACGCCGCCGGGGCCCCTCGCCAGCGGTGAGAGCTCCTG CTGACGCCGCCGGGGCCCCTGGCCAGCGGTGAGAGCTCCTG Direct Loss 0.959211688398519 0 0.87288976 0.639337 prediction 0.918423376797037 Functional Loss - CXCL6 ENSG00000124875 CDS Human protein_coding chr4:74702569 chr4:74702569 synonymous SNV . 0 21 hm5C_associated_SNPs_48557 0 0 0 0 1 CXCL6 chr4:74702576 5'GT 74702576 Upstream 8bp
chr12 57859426 57859426 1 + C T SKCM 57859426 + 57859406 57859446 41 ACATGCTGGTTGGCAAGTGCCGGGAGGAACCCTTGGAAGGT ACATGCTGGTTGGCAAGTGCTGGGAGGAACCCTTGGAAGGT Direct Loss 0.959210599247557 0 0.940043 0.8295319 prediction 0.918421198495114 Functional Loss - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57859426 chr12:57859426 nonsynonymous SNV 0.940 1 21 hm5C_associated_SNPs_48558 0 0 0 0 2 GLI1 chr12:57859390 3'AG 57859390 Downstream 37bp
chr12 57859426 57859426 1 + C T SKCM 57859426 + 57859406 57859446 41 ACATGCTGGTTGGCAAGTGCCGGGAGGAACCCTTGGAAGGT ACATGCTGGTTGGCAAGTGCTGGGAGGAACCCTTGGAAGGT Direct Loss 0.959210599247557 0 0.940043 0.8295319 prediction 0.918421198495114 Functional Loss - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57859426 chr12:57859426 nonsynonymous SNV 0.940 1 21 hm5C_associated_SNPs_48558 0 0 0 0 2 GLI1 chr12:57859479 5'GT 57859479 Upstream 54bp
chr11 113860273 113860273 1 + C T CESC 113860273 + 113860253 113860293 41 GTAGCCCTCCCCCACCACCTCGGGAGGCCTCGCTGGCGGTG GTAGCCCTCCCCCACCACCTTGGGAGGCCTCGCTGGCGGTG Direct Loss 0.959167552353601 0 0.9460927 0.9165337 prediction 0.918335104707201 Functional Loss - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113860273 chr11:113860273 nonsynonymous SNV 0.007 2 21 hm5C_associated_SNPs_48561 0 0 0 0 1 HTR3A chr11:113860187 3'AG 113860187 Downstream 87bp
chr1 54432012 54432012 1 + C A THYM 54432012 + 54431992 54432032 41 GACTGCGGAAGCTGTGAAGCCACGGGAGACCTCGGAGCCTA GACTGCGGAAGCTGTGAAGCAACGGGAGACCTCGGAGCCTA Direct Loss 0.959166216790094 0 0.85189617 0.7738373 prediction 0.918332433580187 Functional Loss - LRRC42 ENSG00000116212 CDS Human protein_coding chr1:54432012 chr1:54432012 nonsynonymous SNV 0.006 0 21 hm5C_associated_SNPs_48562 0 0 1 0 2 LRRC42 chr1:54431969 3'AG 54431969 Downstream 44bp
chr1 54432012 54432012 1 + C A THYM 54432012 + 54431992 54432032 41 GACTGCGGAAGCTGTGAAGCCACGGGAGACCTCGGAGCCTA GACTGCGGAAGCTGTGAAGCAACGGGAGACCTCGGAGCCTA Direct Loss 0.959166216790094 0 0.85189617 0.7738373 prediction 0.918332433580187 Functional Loss - LRRC42 ENSG00000116212 CDS Human protein_coding chr1:54432012 chr1:54432012 nonsynonymous SNV 0.006 0 21 hm5C_associated_SNPs_48562 0 0 1 0 2 LRRC42 chr1:54432053 5'GT 54432053 Upstream 42bp
chr19 56206250 56206250 1 + C A UCEC 56206250 + 56206230 56206270 41 GGAAGACGCCGGAGTCATTCCTGGGGCCCAATGCAGCCCTC GGAAGACGCCGGAGTCATTCATGGGGCCCAATGCAGCCCTC Direct Loss 0.95914683548942 0 0.91301835 0.91937864 prediction 0.918293670978841 Functional Loss - EPN1 ENSG00000063245 CDS Human protein_coding chr19:56206250 chr19:56206250 nonsynonymous SNV 0.954 3 21 hm5C_associated_SNPs_48564 0 0 1 0 1 EPN1 chr19:56206349 5'GT 56206349 Upstream 100bp
chr12 108589970 108589970 1 + C T LUSC 108589970 + 108589950 108589990 41 CCCTCAAGGGGAGGGTTGTCCGGGAGAAGGAGGAAGAGCGA CCCTCAAGGGGAGGGTTGTCTGGGAGAAGGAGGAAGAGCGA Direct Loss 0.959140113830741 0 0.90838826 0.8873818 prediction 0.918280227661482 Functional Loss - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108589970 chr12:108589970 nonsynonymous SNV 0.993 2 21 hm5C_associated_SNPs_48565 0 0 0 0 1 WSCD2 chr12:108589991 5'GT 108589991 Upstream 22bp
chr16 84230520 84230520 1 - G A SKCM 84230520 - 84230500 84230540 41 GCCCCCAGGCCCTGCTGGTCCAGGAGGAGAGACAGCTGCCT GCCCCCAGGCCCTGCTGGTCTAGGAGGAGAGACAGCTGCCT Direct Loss 0.959113763346037 0 0.7907722 0.45174485 prediction 0.918227526692075 Functional Loss - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84230520 chr16:84230520 synonymous SNV . 0 21 hm5C_associated_SNPs_48567 0 0 0 0 1 ADAD2 chr16:84230488 5'GT 84230488 Upstream 33bp
chr16 1291269 1291269 1 + C T LIHC 1291269 + 1291249 1291289 41 CCATACTGGATGCACTTCTGCGGGGGCTCCCTCATCCACCC CCATACTGGATGCACTTCTGTGGGGGCTCCCTCATCCACCC Direct Loss 0.95909106460306 0 0.92833626 0.88431525 prediction 0.91818212920612 Functional Loss - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291269 chr16:1291269 synonymous SNV . 0 21 hm5C_associated_SNPs_48572 0 0 0 0 1 TPSAB1 chr16:1291325 5'GT 1291325 Upstream 57bp
chr4 169099069 169099069 1 + C T BLCA 169099069 + 169099049 169099089 41 GGAAGCCTGTCAGCAGAAGACGGGGGAGCACAAAACCATGC GGAAGCCTGTCAGCAGAAGATGGGGGAGCACAAAACCATGC Direct Loss 0.959059538543509 0 0.8642544 0.58353466 prediction 0.918119077087017 Functional Loss - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169099069 chr4:169099069 nonsynonymous SNV 0.984 4 21 hm5C_associated_SNPs_48575 0 0 0 0 2 ANXA10 chr4:169099041 3'AG 169099041 Downstream 29bp
chr4 169099069 169099069 1 + C T BLCA 169099069 + 169099049 169099089 41 GGAAGCCTGTCAGCAGAAGACGGGGGAGCACAAAACCATGC GGAAGCCTGTCAGCAGAAGATGGGGGAGCACAAAACCATGC Direct Loss 0.959059538543509 0 0.8642544 0.58353466 prediction 0.918119077087017 Functional Loss - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169099069 chr4:169099069 nonsynonymous SNV 0.984 4 21 hm5C_associated_SNPs_48575 0 0 0 0 2 ANXA10 chr4:169099134 5'GT 169099134 Upstream 66bp
chr2 11300785 11300785 1 + C T STAD 11300785 + 11300765 11300805 41 CTCTGTATCTTTCATTTTAACGGGAACGTGAAGCAGGCCAC CTCTGTATCTTTCATTTTAATGGGAACGTGAAGCAGGCCAC Direct Loss 0.959054934236366 0 0.8678481 0.34971392 prediction 0.918109868472732 Functional Loss - PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11300785 chr2:11300785 synonymous SNV . 0 21 hm5C_associated_SNPs_48576 0 0 1 0 2 PQLC3 chr2:11300751 3'AG 11300751 Downstream 35bp
chr2 11300785 11300785 1 + C T STAD 11300785 + 11300765 11300805 41 CTCTGTATCTTTCATTTTAACGGGAACGTGAAGCAGGCCAC CTCTGTATCTTTCATTTTAATGGGAACGTGAAGCAGGCCAC Direct Loss 0.959054934236366 0 0.8678481 0.34971392 prediction 0.918109868472732 Functional Loss - PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11300785 chr2:11300785 synonymous SNV . 0 21 hm5C_associated_SNPs_48576 0 0 1 0 2 PQLC3 chr2:11300820 5'GT 11300820 Upstream 36bp
chr2 39893487 39893487 1 + C T STAD 39893487 + 39893467 39893507 41 GCTACTTCCTGGGCATCGACCGGGACATCGACACCCTCATC GCTACTTCCTGGGCATCGACTGGGACATCGACACCCTCATC Direct Loss 0.959038397064036 0 0.9037959 0.4227563 prediction 0.918076794128072 Functional Loss - TMEM178A ENSG00000152154 CDS Human protein_coding chr2:39893487 chr2:39893487 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_48577 0 0 0 0 1 TMEM178A chr2:39893514 5'GT 39893514 Upstream 28bp
chr22 17083013 17083013 1 + C T ACC 17083013 + 17082993 17083033 41 GCCACCACCCCCCGAGGAGCCTGGAGCCCCGGCCCCGAGCC GCCACCACCCCCCGAGGAGCTTGGAGCCCCGGCCCCGAGCC Direct Loss 0.959030790412687 0 0.8409485 0.54066044 prediction 0.918061580825374 Functional Loss - TPTEP1 ENSG00000100181 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:17083013 chr22:17083013 . . 0 21 hm5C_associated_SNPs_48579 0 0 0 0 1 TPTEP1 chr22:17083105 5'GT 17083105 Upstream 93bp
chr10 42972764 42972764 1 + C G rs149054476 42972764 + 42972744 42972784 41 AGGCAGTGACGCAGCAACAGCGCGAGGCGACTTTGGAGCGG AGGCAGTGACGCAGCAACAGGGCGAGGCGACTTTGGAGCGG Direct Loss 0.959028545053475 0 0.48944637 0.67654854 prediction 0.918057090106949 Functional Loss - LINC00839 ENSG00000185904 ncRNA_exonic Human lincRNA chr10:42972764 chr10:42972764 . . 0 21 hm5C_associated_SNPs_48580 0 0 0 2 1 LINC00839 chr10:42972709 3'AG 42972709 Downstream 56bp
chr10 5248279 5248279 1 + C T SKCM 5248279 + 5248259 5248299 41 GCAGGATTGGCCAAGTCCATCGGGGTGTCAAACTTCAACTG GCAGGATTGGCCAAGTCCATTGGGGTGTCAAACTTCAACTG Direct Loss 0.959012104902761 0 0.9135605 0.8928746 prediction 0.918024209805521 Functional Loss - AKR1C4 ENSG00000198610 CDS Human protein_coding chr10:5248279 chr10:5248279 synonymous SNV . 0 21 hm5C_associated_SNPs_48582 0 0 0 0 2 AKR1C4 chr10:5248238 3'AG 5248238 Downstream 42bp
chr10 5248279 5248279 1 + C T SKCM 5248279 + 5248259 5248299 41 GCAGGATTGGCCAAGTCCATCGGGGTGTCAAACTTCAACTG GCAGGATTGGCCAAGTCCATTGGGGTGTCAAACTTCAACTG Direct Loss 0.959012104902761 0 0.9135605 0.8928746 prediction 0.918024209805521 Functional Loss - AKR1C4 ENSG00000198610 CDS Human protein_coding chr10:5248279 chr10:5248279 synonymous SNV . 0 21 hm5C_associated_SNPs_48582 0 0 0 0 2 AKR1C4 chr10:5248360 5'GT 5248360 Upstream 82bp
chr4 3443769 3443769 1 + C A rs150750289 3443769 + 3443749 3443789 41 CCCCAGCCCCTGGCCCCCACCGGGGCTGGGCCCCTTCCTCC CCCCAGCCCCTGGCCCCCACAGGGGCTGGGCCCCTTCCTCC Direct Loss 0.959006003602768 0 0.9390899 0.914921 prediction 0.918012007205536 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3443769 chr4:3443769 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48584 0 0 0 0 1 HGFAC chr4:3443845 5'GT 3443845 Upstream 77bp
chr1 32052520 32052520 1 + C T UCEC 32052520 + 32052500 32052540 41 GGCGTCAATGAGTGCGACATCGAGAGCTTCGTGCTGGGCGT GGCGTCAATGAGTGCGACATTGAGAGCTTCGTGCTGGGCGT Direct Loss 0.958968367799903 0 0.8343508 0.6909677 prediction 0.917936735599806 Functional Loss - TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32052520 chr1:32052520 synonymous SNV . 0 21 hm5C_associated_SNPs_48587 0 0 1 0 1 TINAGL1 chr1:32052440 3'AG 32052440 Downstream 81bp
chr8 27516105 27516105 1 + C T SKCM 27516105 + 27516085 27516125 41 AGGAGGAGCTGGAGGGAATTCAGAAGCTGCTTCTGGCCCAG AGGAGGAGCTGGAGGGAATTTAGAAGCTGCTTCTGGCCCAG Direct Loss 0.958964265465601 0 0.863467 0.8140074 prediction 0.917928530931202 Functional Loss - SCARA3 ENSG00000168077 CDS Human protein_coding chr8:27516105 chr8:27516105 stopgain 0.999 1 21 hm5C_associated_SNPs_48588 0 0 0 0 1 SCARA3 chr8:27516013 3'AG 27516013 Downstream 93bp
chrX 8433833 8433833 1 + C T BRCA 8433833 + 8433813 8433853 41 GCAGTTCGTAGAGGGAGACGCGGGAAGAAAGGGGCTGCGAC GCAGTTCGTAGAGGGAGACGTGGGAAGAAAGGGGCTGCGAC Direct Loss 0.958914982156366 0 0.9115659 0.88926375 prediction 0.917829964312733 Functional Loss - VCX3B ENSG00000205642 CDS Human protein_coding chrX:8433833 chrX:8433833 synonymous SNV . 0 21 hm5C_associated_SNPs_48591 0 0 0 0 1 VCX3B chrX:8433786 3'AG 8433786 Downstream 48bp
chr22 29837589 29837589 1 + C A LUAD 29837589 + 29837569 29837609 41 CTCCTCATTTCTGACGACCTCAGGAGCGTCCGAAGTGGGTG CTCCTCATTTCTGACGACCTAAGGAGCGTCCGAAGTGGGTG Direct Loss 0.958909323339697 0 0.76409125 0.21888828 prediction 0.917818646679394 Functional Loss - RFPL1 ENSG00000128250 CDS Human protein_coding chr22:29837589 chr22:29837589 synonymous SNV . 0 21 hm5C_associated_SNPs_48592 0 0 0 0 1 RFPL1 chr22:29837531 3'AG 29837531 Downstream 59bp
chr16 2201750 2201750 1 + C T STAD 2201750 + 2201730 2201770 41 GTGTTACCCATGCCTACTACCGGGATGCTCATGGTGAGCCC GTGTTACCCATGCCTACTACTGGGATGCTCATGGTGAGCCC Direct Loss 0.958897923431974 0 0.8949059 0.8699472 prediction 0.917795846863947 Functional Loss - RAB26 ENSG00000167964 CDS Human protein_coding chr16:2201750 chr16:2201750 nonsynonymous SNV 0.806 5 21 hm5C_associated_SNPs_48593 0 0 0 0 2 RAB26 chr16:2201696 3'AG 2201696 Downstream 55bp
chr16 2201750 2201750 1 + C T STAD 2201750 + 2201730 2201770 41 GTGTTACCCATGCCTACTACCGGGATGCTCATGGTGAGCCC GTGTTACCCATGCCTACTACTGGGATGCTCATGGTGAGCCC Direct Loss 0.958897923431974 0 0.8949059 0.8699472 prediction 0.917795846863947 Functional Loss - RAB26 ENSG00000167964 CDS Human protein_coding chr16:2201750 chr16:2201750 nonsynonymous SNV 0.806 5 21 hm5C_associated_SNPs_48593 0 0 0 0 2 RAB26 chr16:2201762 5'GT 2201762 Upstream 13bp
chr1 150477121 150477121 1 + C A UCEC 150477121 + 150477101 150477141 41 TTTCAAGGCAGGCGGGTGCCCTGGAGCGTCCAGTCCTCATT TTTCAAGGCAGGCGGGTGCCATGGAGCGTCCAGTCCTCATT Direct Loss 0.958856695221653 0 0.84497607 0.63746977 prediction 0.917713390443306 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150477121 chr1:150477121 nonsynonymous SNV 0.186 0 21 hm5C_associated_SNPs_48598 0 0 1 0 2 TARS2 chr1:150477108 3'AG 150477108 Downstream 14bp
chr1 150477121 150477121 1 + C A UCEC 150477121 + 150477101 150477141 41 TTTCAAGGCAGGCGGGTGCCCTGGAGCGTCCAGTCCTCATT TTTCAAGGCAGGCGGGTGCCATGGAGCGTCCAGTCCTCATT Direct Loss 0.958856695221653 0 0.84497607 0.63746977 prediction 0.917713390443306 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150477121 chr1:150477121 nonsynonymous SNV 0.186 0 21 hm5C_associated_SNPs_48598 0 0 1 0 2 TARS2 chr1:150477209 5'GT 150477209 Upstream 89bp
chr11 66366699 66366699 1 + C G CESC 66366699 + 66366679 66366719 41 ACGGGGCGGCAGGCGGTACTCAAGGGCATGGGCAGCGGCCA ACGGGGCGGCAGGCGGTACTGAAGGGCATGGGCAGCGGCCA Direct Loss 0.958851535600897 0 0.90298325 0.8808086 prediction 0.917703071201794 Functional Loss - CCS ENSG00000173992 CDS Human protein_coding chr11:66366699 chr11:66366699 synonymous SNV . 0 21 hm5C_associated_SNPs_48599 0 0 1 0 1 CCS chr11:66366724 5'GT 66366724 Upstream 26bp
chr1 119923811 119923811 1 + C T UCEC 119923811 + 119923791 119923831 41 GAGCAGATGACAGCATCACGCGGGATGACAACATTGCAGCA GAGCAGATGACAGCATCACGTGGGATGACAACATTGCAGCA Direct Loss 0.958832675597534 0 0.92955506 0.8839347 prediction 0.917665351195068 Functional Loss - HAO2 ENSG00000116882 CDS Human protein_coding chr1:119923811 chr1:119923811 nonsynonymous SNV 0.004 2 21 hm5C_associated_SNPs_48601 0 0 0 0 1 HAO2 chr1:119923839 5'GT 119923839 Upstream 29bp
chr21 37518645 37518645 1 - G T LUAD 37518645 - 37518625 37518665 41 GGTCCTGGGCAGCACGCATTCACCAGAATCCTGTCAGCTTT GGTCCTGGGCAGCACGCATTAACCAGAATCCTGTCAGCTTT Direct Loss 0.958806116064593 0 0.17834887 0.18150026 prediction 0.917612232129186 Functional Loss - CBR3 ENSG00000159231 CDS Human protein_coding chr21:37518645 chr21:37518645 synonymous SNV . 0 21 hm5C_associated_SNPs_48603 0 0 0 0 2 CBR3 chr21:37518554 5'GT 37518554 Upstream 92bp
chr21 37518645 37518645 1 - G T LUAD 37518645 - 37518625 37518665 41 GGTCCTGGGCAGCACGCATTCACCAGAATCCTGTCAGCTTT GGTCCTGGGCAGCACGCATTAACCAGAATCCTGTCAGCTTT Direct Loss 0.958806116064593 0 0.17834887 0.18150026 prediction 0.917612232129186 Functional Loss - CBR3 ENSG00000159231 CDS Human protein_coding chr21:37518645 chr21:37518645 synonymous SNV . 0 21 hm5C_associated_SNPs_48603 0 0 0 0 2 CBR3 chr21:37518653 3'AG 37518653 Downstream 9bp
chr22 35815961 35815961 1 + C T COAD 35815961 + 35815941 35815981 41 CGGAGCGGGGCCCGTCAGCACGAGAGGGACAGTGACCGCCG CGGAGCGGGGCCCGTCAGCATGAGAGGGACAGTGACCGCCG Direct Loss 0.958785210803823 0 0.8971424 0.81053543 prediction 0.917570421607647 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35815961 chr22:35815961 synonymous SNV . 0 21 hm5C_associated_SNPs_48606 0 0 1 0 2 MCM5 chr22:35815877 3'AG 35815877 Downstream 85bp
chr22 35815961 35815961 1 + C T COAD 35815961 + 35815941 35815981 41 CGGAGCGGGGCCCGTCAGCACGAGAGGGACAGTGACCGCCG CGGAGCGGGGCCCGTCAGCATGAGAGGGACAGTGACCGCCG Direct Loss 0.958785210803823 0 0.8971424 0.81053543 prediction 0.917570421607647 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35815961 chr22:35815961 synonymous SNV . 0 21 hm5C_associated_SNPs_48606 0 0 1 0 2 MCM5 chr22:35816005 5'GT 35816005 Upstream 45bp
chr2 15732011 15732011 1 + C A rs199677503 15732011 + 15731991 15732031 41 CACTGCCACGCCGTGTCAGTCGGGAGGGAGGGAGCGAGCAG CACTGCCACGCCGTGTCAGTAGGGAGGGAGGGAGCGAGCAG Direct Loss 0.958771515623336 0 0.92572856 0.907808 prediction 0.917543031246673 Functional Loss - DDX1 ENSG00000079785 UTR5 Human protein_coding chr2:15732011 chr2:15732011 . . 0 21 hm5C_associated_SNPs_48609 0 0 1 0 1 DDX1 chr2:15732073 5'GT 15732073 Upstream 63bp
chr7 138487709 138487709 1 + C T SKCM 138487709 + 138487689 138487729 41 GTGGACGAGTACGGCTGGATCGCGGCAGCTGTTGGCTGGAG GTGGACGAGTACGGCTGGATTGCGGCAGCTGTTGGCTGGAG Direct Loss 0.95872604397891 0 0.88205576 0.75190747 prediction 0.91745208795782 Functional Loss - TMEM213 ENSG00000214128 CDS Human protein_coding chr7:138487709 chr7:138487709 synonymous SNV . 0 21 hm5C_associated_SNPs_48613 0 0 0 0 1 TMEM213 chr7:138487645 3'AG 138487645 Downstream 65bp
chrX 46943850 46943850 1 + C T STAD 46943850 + 46943830 46943870 41 CTCCGTGGCTCTTCGCCAGTCGGGAGGCTATGTTGCCACCA CTCCGTGGCTCTTCGCCAGTTGGGAGGCTATGTTGCCACCA Direct Loss 0.958712168762014 0 0.9181793 0.4447133 prediction 0.917424337524028 Functional Loss - RGN ENSG00000130988 CDS Human protein_coding chrX:46943850 chrX:46943850 nonsynonymous SNV 0.323 0 21 hm5C_associated_SNPs_48614 0 0 0 0 1 RGN chrX:46943817 3'AG 46943817 Downstream 34bp
chr13 114193755 114193755 1 + C T UCEC 114193755 + 114193735 114193775 41 TCTCAGGGCCCCGTGGTCACCGAGGAGATCGCCACCTCCAT TCTCAGGGCCCCGTGGTCACTGAGGAGATCGCCACCTCCAT Direct Loss 0.958705781586358 0 0.9222038 0.9144883 prediction 0.917411563172717 Functional Loss - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114193755 chr13:114193755 synonymous SNV . 0 21 hm5C_associated_SNPs_48615 0 0 1 0 2 TMCO3 chr13:114193672 3'AG 114193672 Downstream 84bp
chr13 114193755 114193755 1 + C T UCEC 114193755 + 114193735 114193775 41 TCTCAGGGCCCCGTGGTCACCGAGGAGATCGCCACCTCCAT TCTCAGGGCCCCGTGGTCACTGAGGAGATCGCCACCTCCAT Direct Loss 0.958705781586358 0 0.9222038 0.9144883 prediction 0.917411563172717 Functional Loss - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114193755 chr13:114193755 synonymous SNV . 0 21 hm5C_associated_SNPs_48615 0 0 1 0 2 TMCO3 chr13:114193822 5'GT 114193822 Upstream 68bp
chr3 46940284 46940284 1 + C A rs201016660 46940284 + 46940264 46940304 41 GATGAGGCTGAGCGCCTCACCGAGGAGGAGCTGCGCGCCAT GATGAGGCTGAGCGCCTCACAGAGGAGGAGCTGCGCGCCAT Direct Loss 0.958685035305505 0 0.90773857 0.90932024 prediction 0.91737007061101 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46940284 chr3:46940284 synonymous SNV . 0 21 hm5C_associated_SNPs_48617 0 0 0 0 1 PTH1R chr3:46940347 5'GT 46940347 Upstream 64bp
chr22 24325115 24325115 1 + C G rs548564711 24325115 + 24325095 24325135 41 AAGGAGAAGGTGGAACGCAACAGGACTGCCATGGACCAGGC AAGGAGAAGGTGGAACGCAAGAGGACTGCCATGGACCAGGC Direct Loss 0.958670189469686 0 0.7993092 0.81168306 prediction 0.917340378939373 Functional Loss - GSTT2;GSTT2B ENSG00000099984 CDS Human polymorphic_pseudogene chr22:24325115 chr22:24325115 nonsynonymous SNV 0.307 2 21 hm5C_associated_SNPs_48618 0 0 0 0 2 GSTT2;GSTT2B chr22:24325062 3'AG 24325062 Downstream 54bp
chr22 24325115 24325115 1 + C G rs548564711 24325115 + 24325095 24325135 41 AAGGAGAAGGTGGAACGCAACAGGACTGCCATGGACCAGGC AAGGAGAAGGTGGAACGCAAGAGGACTGCCATGGACCAGGC Direct Loss 0.958670189469686 0 0.7993092 0.81168306 prediction 0.917340378939373 Functional Loss - GSTT2;GSTT2B ENSG00000099984 CDS Human polymorphic_pseudogene chr22:24325115 chr22:24325115 nonsynonymous SNV 0.307 2 21 hm5C_associated_SNPs_48618 0 0 0 0 2 GSTT2;GSTT2B chr22:24325193 5'GT 24325193 Upstream 79bp
chr8 36768464 36768464 1 + C T SKCM 36768464 + 36768444 36768484 41 TTAGGGATGTGCACTTTATTCTGGAGACCTCCATGCGGCCA TTAGGGATGTGCACTTTATTTTGGAGACCTCCATGCGGCCA Direct Loss 0.958661712732702 0 0.39269143 0.58807003 prediction 0.917323425465403 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36768464 chr8:36768464 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48619 0 0 0 0 1 KCNU1 chr8:36768448 3'AG 36768448 Downstream 17bp
chr20 61273845 61273845 1 + C A rs530768092 61273845 + 61273825 61273865 41 ATGAAGCGGCGCGTGGCTGCCGGGGAGGCCAGAGCGTGGAG ATGAAGCGGCGCGTGGCTGCAGGGGAGGCCAGAGCGTGGAG Direct Loss 0.958657300848247 0 0.9172805 0.89856327 prediction 0.917314601696493 Functional Loss - SLCO4A1 ENSG00000101187 UTR5 Human protein_coding chr20:61273845 chr20:61273845 . . 0 21 hm5C_associated_SNPs_48620 0 0 1 0 1 SLCO4A1 chr20:61273905 5'GT 61273905 Upstream 61bp
chr16 843165 843165 1 + C T COAD 843165 + 843145 843185 41 TCCTGTACAGCCGGGGCCAGCGGGAGCTGAGCGTGCGGGAC TCCTGTACAGCCGGGGCCAGTGGGAGCTGAGCGTGCGGGAC Direct Loss 0.958656041904082 0 0.9199438 0.8996029 prediction 0.917312083808163 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:843165 chr16:843165 nonsynonymous SNV 0.198 1 21 hm5C_associated_SNPs_48621 0 0 1 0 1 CHTF18 chr16:843144 3'AG 843144 Downstream 22bp
chr22 32754215 32754215 1 + C T LUAD 32754215 + 32754195 32754235 41 ATCTGGAAAAACCAATGTCCCTGGAGTGTGGATGCACCGTC ATCTGGAAAAACCAATGTCCTTGGAGTGTGGATGCACCGTC Direct Loss 0.958629069694417 0 0.18999198 0.30110407 prediction 0.917258139388834 Functional Loss - RFPL3 ENSG00000128276 CDS Human protein_coding chr22:32754215 chr22:32754215 synonymous SNV . 0 21 hm5C_associated_SNPs_48623 0 0 0 0 1 RFPL3 chr22:32754141 3'AG 32754141 Downstream 75bp
chr14 65016722 65016722 1 + C T DLBC 65016722 + 65016702 65016742 41 TCCAGGGCGAGGCCATGTACCGGGTGCCCGAGTTTTATGCG TCCAGGGCGAGGCCATGTACTGGGTGCCCGAGTTTTATGCG Direct Loss 0.958611318317365 0 0.8973683 0.5989214 prediction 0.917222636634729 Functional Loss - PPP1R36 ENSG00000165807 CDS Human protein_coding chr14:65016722 chr14:65016722 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48627 0 0 0 0 1 PPP1R36 chr14:65016784 5'GT 65016784 Upstream 63bp
chr1 109241848 109241848 1 + C T GBM 109241848 + 109241828 109241868 41 CAAGAAGTAGAAGTCATCATCGGGAGGGCCATGGGTCTTCT CAAGAAGTAGAAGTCATCATTGGGAGGGCCATGGGTCTTCT Direct Loss 0.958593039745361 0 0.9308535 0.89761126 prediction 0.917186079490722 Functional Loss - PRPF38B ENSG00000134186 CDS Human protein_coding chr1:109241848 chr1:109241848 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_48630 0 0 1 0 1 PRPF38B chr1:109241784 3'AG 109241784 Downstream 65bp
chr19 10398421 10398421 1 + C A MESO 10398421 + 10398401 10398441 41 ACGAGTTTGCTGCTGGACCCCGCGACTTCTGGCAGCCCGTG ACGAGTTTGCTGCTGGACCCAGCGACTTCTGGCAGCCCGTG Direct Loss 0.958567927417889 0 0.16484383 0.32303762 prediction 0.917135854835778 Functional Loss - ICAM4 ENSG00000105371 CDS Human protein_coding chr19:10398421 chr19:10398421 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48634 0 0 1 0 1 ICAM4 chr19:10398514 5'GT 10398514 Upstream 94bp
chrX 130217917 130217917 1 + C T COAD 130217917 + 130217897 130217937 41 GGAATGAGCCCACCTTGCCCCGGGAGTTCACTCGCCGTGGG GGAATGAGCCCACCTTGCCCTGGGAGTTCACTCGCCGTGGG Direct Loss 0.958560201639084 0 0.91207844 0.8961803 prediction 0.917120403278167 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130217917 chrX:130217917 nonsynonymous SNV 0.590 2 21 hm5C_associated_SNPs_48635 0 0 0 0 1 ARHGAP36 chrX:130217943 5'GT 130217943 Upstream 27bp
chr17 6909884 6909884 1 + C T UCEC 6909884 + 6909864 6909904 41 CTGAGCTGCAGGCCTGGTGTCGGGAGATCACGGAGGTGGGG CTGAGCTGCAGGCCTGGTGTTGGGAGATCACGGAGGTGGGG Direct Loss 0.9585489770314 0 0.94082737 0.91048133 prediction 0.917097954062799 Functional Loss - ALOX12 ENSG00000108839 CDS Human protein_coding chr17:6909884 chr17:6909884 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_48636 0 0 0 0 2 ALOX12 chr17:6909805 3'AG 6909805 Downstream 80bp
chr17 6909884 6909884 1 + C T UCEC 6909884 + 6909864 6909904 41 CTGAGCTGCAGGCCTGGTGTCGGGAGATCACGGAGGTGGGG CTGAGCTGCAGGCCTGGTGTTGGGAGATCACGGAGGTGGGG Direct Loss 0.9585489770314 0 0.94082737 0.91048133 prediction 0.917097954062799 Functional Loss - ALOX12 ENSG00000108839 CDS Human protein_coding chr17:6909884 chr17:6909884 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_48636 0 0 0 0 2 ALOX12 chr17:6909926 5'GT 6909926 Upstream 43bp
chr16 2871110 2871110 1 + C T COAD 2871110 + 2871090 2871130 41 GGCGGGAAGGATGCCTGCTTCGTGAGTGTCCTTGCCACCAC GGCGGGAAGGATGCCTGCTTTGTGAGTGTCCTTGCCACCAC Direct Loss 0.958531220118763 0 0.45330283 0.4274261 prediction 0.917062440237525 Functional Loss - PRSS21 ENSG00000007038 CDS Human protein_coding chr16:2871110 chr16:2871110 synonymous SNV . 0 21 hm5C_associated_SNPs_48639 0 0 1 0 1 PRSS21 chr16:2871110 5'GT 2871110 Upstream 1bp
chr17 46628509 46628509 1 - G A LUAD 46628509 - 46628489 46628529 41 GGCGGCGGCGGTGGCGGCGGCGGCGGAGGCAGTGGTGGCAG GGCGGCGGCGGTGGCGGCGGTGGCGGAGGCAGTGGTGGCAG Direct Loss 0.958521257141137 0 0.9259921 0.91581035 prediction 0.917042514282274 Functional Loss - HOXB3 ENSG00000120093 CDS Human protein_coding chr17:46628509 chr17:46628509 synonymous SNV . 0 21 hm5C_associated_SNPs_48642 0 0 0 0 1 HOXB3 chr17:46628543 3'AG 46628543 Downstream 35bp
chr10 96447642 96447642 1 + C T SKCM 96447642 + 96447622 96447662 41 TGATCATGGAGAGGAGTTTTCTGGAAGAGGAAGTTTTCCAG TGATCATGGAGAGGAGTTTTTTGGAAGAGGAAGTTTTCCAG Direct Loss 0.958465935399798 0 0.79314816 0.8418108 prediction 0.916931870799596 Functional Loss - CYP2C18 ENSG00000108242 CDS Human protein_coding chr10:96447642 chr10:96447642 nonsynonymous SNV 0.933 3 21 hm5C_associated_SNPs_48652 0 0 1 0 1 CYP2C18 chr10:96447689 5'GT 96447689 Upstream 48bp
chr10 45939199 45939199 1 + C T COAD 45939199 + 45939179 45939219 41 TCCCCAAGTCGGTCAAGAGCCGGGAGCAGCTGTCGGAGTAC TCCCCAAGTCGGTCAAGAGCTGGGAGCAGCTGTCGGAGTAC Direct Loss 0.958444677067476 0 0.89927053 0.7116939 prediction 0.916889354134953 Functional Loss - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45939199 chr10:45939199 nonsynonymous SNV 0.940 1 21 hm5C_associated_SNPs_48653 0 0 0 0 2 ALOX5 chr10:45939176 3'AG 45939176 Downstream 24bp
chr10 45939199 45939199 1 + C T COAD 45939199 + 45939179 45939219 41 TCCCCAAGTCGGTCAAGAGCCGGGAGCAGCTGTCGGAGTAC TCCCCAAGTCGGTCAAGAGCTGGGAGCAGCTGTCGGAGTAC Direct Loss 0.958444677067476 0 0.89927053 0.7116939 prediction 0.916889354134953 Functional Loss - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45939199 chr10:45939199 nonsynonymous SNV 0.940 1 21 hm5C_associated_SNPs_48653 0 0 0 0 2 ALOX5 chr10:45939276 5'GT 45939276 Upstream 78bp
chr1 200868717 200868717 1 + C T rs552128674 200868717 + 200868697 200868737 41 AGCTGAGGAGACTCTGCCTTCGGGAAGCGGTGAGGCCCCAG AGCTGAGGAGACTCTGCCTTTGGGAAGCGGTGAGGCCCCAG Direct Loss 0.958415472149121 0 0.8770673 0.7934631 prediction 0.916830944298242 Functional Loss - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200868717 chr1:200868717 nonsynonymous SNV 0.978 4 21 hm5C_associated_SNPs_48656 0 0 1 0 1 C1orf106 chr1:200868725 5'GT 200868725 Upstream 9bp
chrX 73749107 73749107 1 + C T UCEC 73749107 + 73749087 73749127 41 ATTCCCCTGTGCCGGGACTTCGGGGGCCTTATCGTCGTCTG ATTCCCCTGTGCCGGGACTTTGGGGGCCTTATCGTCGTCTG Direct Loss 0.958394518437052 0 0.9298521 0.88828814 prediction 0.916789036874104 Functional Loss - SLC16A2 ENSG00000147100 CDS Human protein_coding chrX:73749107 chrX:73749107 synonymous SNV . 0 21 hm5C_associated_SNPs_48658 0 0 0 0 1 SLC16A2 chrX:73749048 3'AG 73749048 Downstream 60bp
chr11 2416744 2416744 1 + C T rs146021958 2416744 + 2416724 2416764 41 GCTGTGGTGAAGACCTTCCACGAGACGGTGCGGCCCCGGGG GCTGTGGTGAAGACCTTCCATGAGACGGTGCGGCCCCGGGG Direct Loss 0.958386715980672 0 0.24186513 0.10780978 prediction 0.916773431961343 Functional Loss - CD81 ENSG00000110651 CDS Human protein_coding chr11:2416744 chr11:2416744 synonymous SNV . 0 21 hm5C_associated_SNPs_48659 0 0 1 0 2 CD81 chr11:2416646 3'AG 2416646 Downstream 99bp
chr11 2416744 2416744 1 + C T rs146021958 2416744 + 2416724 2416764 41 GCTGTGGTGAAGACCTTCCACGAGACGGTGCGGCCCCGGGG GCTGTGGTGAAGACCTTCCATGAGACGGTGCGGCCCCGGGG Direct Loss 0.958386715980672 0 0.24186513 0.10780978 prediction 0.916773431961343 Functional Loss - CD81 ENSG00000110651 CDS Human protein_coding chr11:2416744 chr11:2416744 synonymous SNV . 0 21 hm5C_associated_SNPs_48659 0 0 1 0 2 CD81 chr11:2416750 5'GT 2416750 Upstream 7bp
chr6 44120386 44120386 1 + C T SKCM 44120386 + 44120366 44120406 41 GCCTGGATGATGTGCGTCTTCACGGTGGTCATGACCTACAG GCCTGGATGATGTGCGTCTTTACGGTGGTCATGACCTACAG Direct Loss 0.958364744460137 0 0.39487922 0.42936727 prediction 0.916729488920273 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44120386 chr6:44120386 synonymous SNV . 0 21 hm5C_associated_SNPs_48661 0 0 1 0 2 TMEM63B chr6:44120330 3'AG 44120330 Downstream 57bp
chr6 44120386 44120386 1 + C T SKCM 44120386 + 44120366 44120406 41 GCCTGGATGATGTGCGTCTTCACGGTGGTCATGACCTACAG GCCTGGATGATGTGCGTCTTTACGGTGGTCATGACCTACAG Direct Loss 0.958364744460137 0 0.39487922 0.42936727 prediction 0.916729488920273 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44120386 chr6:44120386 synonymous SNV . 0 21 hm5C_associated_SNPs_48661 0 0 1 0 2 TMEM63B chr6:44120435 5'GT 44120435 Upstream 50bp
chr10 101556999 101556999 1 + C T COAD 101556999 + 101556979 101557019 41 CCAGGCGGGCACTCCAGAGACGGCAGGAGAAGAGCTCCCAG CCAGGCGGGCACTCCAGAGATGGCAGGAGAAGAGCTCCCAG Direct Loss 0.958353383031385 0 0.8910206 0.88283074 prediction 0.916706766062769 Functional Loss - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101556999 chr10:101556999 nonsynonymous SNV 0.028 3 21 hm5C_associated_SNPs_48662 0 0 1 0 1 ABCC2 chr10:101557088 5'GT 101557088 Upstream 90bp
chr11 65820149 65820149 1 + C T LUSC 65820149 + 65820129 65820169 41 TACTTTGCCCTGCAGGTAATCGCGAGGAGCTGGTGGAGCGG TACTTTGCCCTGCAGGTAATTGCGAGGAGCTGGTGGAGCGG Direct Loss 0.958347679029457 0 0.9075857 0.66817343 prediction 0.916695358058915 Functional Loss - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65820149 chr11:65820149 nonsynonymous SNV 0.989 3 21 hm5C_associated_SNPs_48664 0 0 1 0 2 SF3B2 chr11:65820144 3'AG 65820144 Downstream 6bp
chr11 65820149 65820149 1 + C T LUSC 65820149 + 65820129 65820169 41 TACTTTGCCCTGCAGGTAATCGCGAGGAGCTGGTGGAGCGG TACTTTGCCCTGCAGGTAATTGCGAGGAGCTGGTGGAGCGG Direct Loss 0.958347679029457 0 0.9075857 0.66817343 prediction 0.916695358058915 Functional Loss - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65820149 chr11:65820149 nonsynonymous SNV 0.989 3 21 hm5C_associated_SNPs_48664 0 0 1 0 2 SF3B2 chr11:65820190 5'GT 65820190 Upstream 42bp
chr16 2512476 2512476 1 + C G rs555287901 2512476 + 2512456 2512496 41 AGGCGGAGGCGGGGCGCCTGCGGAAGGCCTGCTCGCTGCTG AGGCGGAGGCGGGGCGCCTGGGGAAGGCCTGCTCGCTGCTG Direct Loss 0.958334490390355 0 0.92586267 0.9186017 prediction 0.916668980780709 Functional Loss - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2512476 chr16:2512476 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48667 0 0 1 0 2 C16orf59 chr16:2512416 3'AG 2512416 Downstream 61bp
chr16 2512476 2512476 1 + C G rs555287901 2512476 + 2512456 2512496 41 AGGCGGAGGCGGGGCGCCTGCGGAAGGCCTGCTCGCTGCTG AGGCGGAGGCGGGGCGCCTGGGGAAGGCCTGCTCGCTGCTG Direct Loss 0.958334490390355 0 0.92586267 0.9186017 prediction 0.916668980780709 Functional Loss - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2512476 chr16:2512476 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48667 0 0 1 0 2 C16orf59 chr16:2512527 5'GT 2512527 Upstream 52bp
chr8 48921025 48921025 1 + C T LUAD 48921025 + 48921005 48921045 41 GCAGGAGAAGATGGCGGTCTCCACAGGTCGGTTCCCGGGCC GCAGGAGAAGATGGCGGTCTTCACAGGTCGGTTCCCGGGCC Direct Loss 0.958325102028005 0 0.86477995 0.80278397 prediction 0.916650204056009 Functional Loss - UBE2V2 ENSG00000169139 CDS Human protein_coding chr8:48921025 chr8:48921025 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_48668 0 0 1 0 1 UBE2V2 chr8:48921030 5'GT 48921030 Upstream 6bp
chr10 124671216 124671216 1 + C T STAD 124671216 + 124671196 124671236 41 GGAAGCAGCTTACTGGTTGCCGCGATGGTGCTCCTAAGTGT GGAAGCAGCTTACTGGTTGCTGCGATGGTGCTCCTAAGTGT Direct Loss 0.958310753209673 0 0.20515427 0.092380375 prediction 0.916621506419346 Functional Loss - FAM24A ENSG00000203795 CDS Human protein_coding chr10:124671216 chr10:124671216 synonymous SNV . 0 21 hm5C_associated_SNPs_48669 0 0 0 0 2 FAM24A chr10:124671149 3'AG 124671149 Downstream 68bp
chr10 124671216 124671216 1 + C T STAD 124671216 + 124671196 124671236 41 GGAAGCAGCTTACTGGTTGCCGCGATGGTGCTCCTAAGTGT GGAAGCAGCTTACTGGTTGCTGCGATGGTGCTCCTAAGTGT Direct Loss 0.958310753209673 0 0.20515427 0.092380375 prediction 0.916621506419346 Functional Loss - FAM24A ENSG00000203795 CDS Human protein_coding chr10:124671216 chr10:124671216 synonymous SNV . 0 21 hm5C_associated_SNPs_48669 0 0 0 0 2 FAM24A chr10:124671275 5'GT 124671275 Upstream 60bp
chr1 87797776 87797776 1 + C T TGCT 87797776 + 87797756 87797796 41 TGGAAGCGGTGCGCAGGCTGCGGGGGCAAGATTGCGGACCG TGGAAGCGGTGCGCAGGCTGTGGGGGCAAGATTGCGGACCG Direct Loss 0.958285970215323 0 0.935693 0.9093437 prediction 0.916571940430646 Functional Loss - LMO4 ENSG00000143013 CDS Human protein_coding chr1:87797776 chr1:87797776 synonymous SNV . 0 21 hm5C_associated_SNPs_48671 0 0 1 0 1 LMO4 chr1:87797696 3'AG 87797696 Downstream 81bp
chr15 76630126 76630126 1 + C T COAD 76630126 + 76630106 76630146 41 CCTTCCCCGGCAGAGAAGCCCGGGACGGCCATGTGCGTGGG CCTTCCCCGGCAGAGAAGCCTGGGACGGCCATGTGCGTGGG Direct Loss 0.958283585021346 0 0.9043125 0.8559566 prediction 0.916567170042691 Functional Loss - ISL2 ENSG00000159556 CDS Human protein_coding chr15:76630126 chr15:76630126 synonymous SNV . 0 21 hm5C_associated_SNPs_48672 0 0 1 0 1 ISL2 chr15:76630119 3'AG 76630119 Downstream 8bp
chr1 43166659 43166659 1 + C T LUSC 43166659 + 43166639 43166679 41 GCTGAGAATTCGTCCGCTCCCGAGGCTGAGCAGGGCGGGGC GCTGAGAATTCGTCCGCTCCTGAGGCTGAGCAGGGCGGGGC Direct Loss 0.958261802733863 0 0.927819 0.8915492 prediction 0.916523605467726 Functional Loss - YBX1 ENSG00000065978 CDS Human protein_coding chr1:43166659 chr1:43166659 synonymous SNV . 0 21 hm5C_associated_SNPs_48677 0 0 1 0 1 YBX1 chr1:43166717 5'GT 43166717 Upstream 59bp
chr4 69978250 69978250 1 + C T LUAD 69978250 + 69978230 69978270 41 CCCCTGGATCGAGCAGTCTTCTGGATTGAATTTGTCATGCG CCCCTGGATCGAGCAGTCTTTTGGATTGAATTTGTCATGCG Direct Loss 0.958236187480215 0 0.17762643 0.09153631 prediction 0.91647237496043 Functional Loss - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69978250 chr4:69978250 synonymous SNV . 0 21 hm5C_associated_SNPs_48681 0 0 0 0 1 UGT2B7 chr4:69978175 3'AG 69978175 Downstream 76bp
chr11 66325263 66325263 1 + C T BLCA 66325263 + 66325243 66325283 41 AGCGCAAACTAGAGGACTTTCGGGACTACCGGCGTCTGCAC AGCGCAAACTAGAGGACTTTTGGGACTACCGGCGTCTGCAC Direct Loss 0.958197829675129 0 0.9203166 0.8752182 prediction 0.916395659350257 Functional Loss - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66325263 chr11:66325263 unknown 0.997 2 21 hm5C_associated_SNPs_48683 0 0 0 0 1 ACTN3 chr11:66325170 3'AG 66325170 Downstream 94bp
chr2 173292122 173292122 1 + C T rs556066382 173292122 + 173292102 173292142 41 GCGCAGTGGGGCTGCTTCGCCGCGAGCTCGCCTCCGGGGCT GCGCAGTGGGGCTGCTTCGCTGCGAGCTCGCCTCCGGGGCT Direct Loss 0.958186331393771 0 0.8478553 0.769341 prediction 0.916372662787541 Functional Loss - ITGA6 ENSG00000091409 UTR5 Human protein_coding chr2:173292122 chr2:173292122 . . 0 21 hm5C_associated_SNPs_48684 0 0 0 0 1 ITGA6 chr2:173292198 5'GT 173292198 Upstream 77bp
chr4 941568 941568 1 + C G rs148512239 941568 + 941548 941588 41 AGAGCAGGCACTGGATACACCGGGGGACTGCCCCCCAGGCA AGAGCAGGCACTGGATACACGGGGGGACTGCCCCCCAGGCA Direct Loss 0.958165920961486 0 0.9355941 0.92847854 prediction 0.916331841922972 Functional Loss - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:941568 chr4:941568 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_48685 0 0 1 0 1 TMEM175 chr4:941497 3'AG 941497 Downstream 72bp
chr20 25199209 25199209 1 + C T COAD 25199209 + 25199189 25199229 41 CCTCGGGCTCGGGCTGATGTCGGCACGCCTGGCGATCCTGG CCTCGGGCTCGGGCTGATGTTGGCACGCCTGGCGATCCTGG Direct Loss 0.958124761841726 0 0.910556 0.7893491 prediction 0.916249523683451 Functional Loss - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25199209 chr20:25199209 nonsynonymous SNV 0.951 3 21 hm5C_associated_SNPs_48691 0 0 1 0 2 ENTPD6 chr20:25199186 3'AG 25199186 Downstream 24bp
chr20 25199209 25199209 1 + C T COAD 25199209 + 25199189 25199229 41 CCTCGGGCTCGGGCTGATGTCGGCACGCCTGGCGATCCTGG CCTCGGGCTCGGGCTGATGTTGGCACGCCTGGCGATCCTGG Direct Loss 0.958124761841726 0 0.910556 0.7893491 prediction 0.916249523683451 Functional Loss - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25199209 chr20:25199209 nonsynonymous SNV 0.951 3 21 hm5C_associated_SNPs_48691 0 0 1 0 2 ENTPD6 chr20:25199250 5'GT 25199250 Upstream 42bp
chr1 38261455 38261455 1 + C T STAD 38261455 + 38261435 38261475 41 CCTGGCATGGCTGATGATAACGGGGAGCCCTCAGATGACCT CCTGGCATGGCTGATGATAATGGGGAGCCCTCAGATGACCT Direct Loss 0.958119888621627 0 0.8861102 0.6206368 prediction 0.916239777243254 Functional Loss - MANEAL ENSG00000185090 CDS Human protein_coding chr1:38261455 chr1:38261455 nonsynonymous SNV 0.807 0 21 hm5C_associated_SNPs_48693 0 0 1 0 2 MANEAL chr1:38261409 3'AG 38261409 Downstream 47bp
chr1 38261455 38261455 1 + C T STAD 38261455 + 38261435 38261475 41 CCTGGCATGGCTGATGATAACGGGGAGCCCTCAGATGACCT CCTGGCATGGCTGATGATAATGGGGAGCCCTCAGATGACCT Direct Loss 0.958119888621627 0 0.8861102 0.6206368 prediction 0.916239777243254 Functional Loss - MANEAL ENSG00000185090 CDS Human protein_coding chr1:38261455 chr1:38261455 nonsynonymous SNV 0.807 0 21 hm5C_associated_SNPs_48693 0 0 1 0 2 MANEAL chr1:38261518 5'GT 38261518 Upstream 64bp
chr20 36361374 36361374 1 + C T BRCA 36361374 + 36361354 36361394 41 CTCGAGAACGCGGCCGCTATCGGGAAGAAGAAATGACTGTG CTCGAGAACGCGGCCGCTATTGGGAAGAAGAAATGACTGTG Direct Loss 0.958110561932265 0 0.93251157 0.8897985 prediction 0.91622112386453 Functional Loss - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36361374 chr20:36361374 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_48696 0 0 1 0 2 CTNNBL1 chr20:36361281 3'AG 36361281 Downstream 94bp
chr20 36361374 36361374 1 + C T BRCA 36361374 + 36361354 36361394 41 CTCGAGAACGCGGCCGCTATCGGGAAGAAGAAATGACTGTG CTCGAGAACGCGGCCGCTATTGGGAAGAAGAAATGACTGTG Direct Loss 0.958110561932265 0 0.93251157 0.8897985 prediction 0.91622112386453 Functional Loss - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36361374 chr20:36361374 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_48696 0 0 1 0 2 CTNNBL1 chr20:36361469 5'GT 36361469 Upstream 96bp
chr19 55593851 55593851 1 + C T UCEC 55593851 + 55593831 55593871 41 ACGTCGGGGGGGCCGGAGTTCGCGAGCAGTGTGCGGCGGCC ACGTCGGGGGGGCCGGAGTTTGCGAGCAGTGTGCGGCGGCC Direct Loss 0.957977098801732 0 0.7563412 0.8038298 prediction 0.915954197603463 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55593851 chr19:55593851 synonymous SNV . 0 21 hm5C_associated_SNPs_48704 0 0 1 0 1 EPS8L1 chr19:55593822 3'AG 55593822 Downstream 30bp
chr1 87797878 87797878 1 + C A LUAD 87797878 + 87797858 87797898 41 CAGGCGCAGCTGGGCGACATCGGCACGTCCTGTTACACCAA CAGGCGCAGCTGGGCGACATAGGCACGTCCTGTTACACCAA Direct Loss 0.957975499557594 0 0.812232 0.4071712 prediction 0.915950999115189 Functional Loss - LMO4 ENSG00000143013 CDS Human protein_coding chr1:87797878 chr1:87797878 synonymous SNV . 0 21 hm5C_associated_SNPs_48705 0 0 1 0 1 LMO4 chr1:87797934 5'GT 87797934 Upstream 57bp
chr10 99338335 99338335 1 + C T UCEC 99338335 + 99338315 99338355 41 ATTGAGAAGTTCCTGGCTGACGGGGGGTCAGCCGACACGTG ATTGAGAAGTTCCTGGCTGATGGGGGGTCAGCCGACACGTG Direct Loss 0.957960723609989 0 0.93261176 0.9135152 prediction 0.915921447219977 Functional Loss - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99338335 chr10:99338335 synonymous SNV . 0 21 hm5C_associated_SNPs_48709 0 0 0 0 2 ANKRD2 chr10:99338255 3'AG 99338255 Downstream 81bp
chr10 99338335 99338335 1 + C T UCEC 99338335 + 99338315 99338355 41 ATTGAGAAGTTCCTGGCTGACGGGGGGTCAGCCGACACGTG ATTGAGAAGTTCCTGGCTGATGGGGGGTCAGCCGACACGTG Direct Loss 0.957960723609989 0 0.93261176 0.9135152 prediction 0.915921447219977 Functional Loss - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99338335 chr10:99338335 synonymous SNV . 0 21 hm5C_associated_SNPs_48709 0 0 0 0 2 ANKRD2 chr10:99338362 5'GT 99338362 Upstream 28bp
chr12 110341913 110341913 1 + C G rs140383594 110341913 + 110341893 110341933 41 AGAAGAATCCGGGAGCAGCACGGGAAGCTGAAATCAGCCAA AGAAGAATCCGGGAGCAGCAGGGGAAGCTGAAATCAGCCAA Direct Loss 0.957947204452951 0 0.8348043 0.9035873 prediction 0.915894408905902 Functional Loss - TCHP ENSG00000139437 CDS Human protein_coding chr12:110341913 chr12:110341913 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_48712 0 0 1 0 1 TCHP chr12:110341952 5'GT 110341952 Upstream 40bp
chr9 138415805 138415805 1 + C T rs545463441 138415805 + 138415785 138415825 41 TACTGTGAGGGCGAGCTGCACGGGAAGCCGGTCCGAGGGGT TACTGTGAGGGCGAGCTGCATGGGAAGCCGGTCCGAGGGGT Direct Loss 0.957897825318918 0 0.8442463 0.5436275 prediction 0.915795650637836 Functional Loss - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415805 chr9:138415805 synonymous SNV . 0 21 hm5C_associated_SNPs_48716 0 0 0 0 3 LCN1 chr9:138415726 3'AG 138415726 Downstream 80bp
chr9 138415805 138415805 1 + C T rs545463441 138415805 + 138415785 138415825 41 TACTGTGAGGGCGAGCTGCACGGGAAGCCGGTCCGAGGGGT TACTGTGAGGGCGAGCTGCATGGGAAGCCGGTCCGAGGGGT Direct Loss 0.957897825318918 0 0.8442463 0.5436275 prediction 0.915795650637836 Functional Loss - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415805 chr9:138415805 synonymous SNV . 0 21 hm5C_associated_SNPs_48716 0 0 0 0 3 LCN1 chr9:138415823 5'GT 138415823 Upstream 19bp
chr9 138415805 138415805 1 + C T rs545463441 138415805 + 138415785 138415825 41 TACTGTGAGGGCGAGCTGCACGGGAAGCCGGTCCGAGGGGT TACTGTGAGGGCGAGCTGCATGGGAAGCCGGTCCGAGGGGT Direct Loss 0.957897825318918 0 0.8442463 0.5436275 prediction 0.915795650637836 Functional Loss - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415805 chr9:138415805 synonymous SNV . 0 21 hm5C_associated_SNPs_48716 0 0 0 0 3 LCN1 chr9:138415836 5'GT 138415836 Upstream 32bp
chr5 5303423 5303423 1 + C T CESC 5303423 + 5303403 5303443 41 GCCTGCAGTCGGACGTGTGGCGGGGGTGCCCAGAGCCGCCC GCCTGCAGTCGGACGTGTGGTGGGGGTGCCCAGAGCCGCCC Direct Loss 0.957853431240709 0 0.91225994 0.88839674 prediction 0.915706862481418 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5303423 chr5:5303423 synonymous SNV . 0 21 hm5C_associated_SNPs_48722 0 0 0 0 1 ADAMTS16 chr5:5303381 3'AG 5303381 Downstream 43bp
chr3 44906624 44906624 1 + C T UCEC 44906624 + 44906604 44906644 41 TGCGGACTCACCCTAATCCACAGGAAGCTCCCACCCACCTG TGCGGACTCACCCTAATCCATAGGAAGCTCCCACCCACCTG Direct Loss 0.957837825345585 0 0.2823915 0.16514325 prediction 0.91567565069117 Functional Loss - TMEM42 ENSG00000169964 CDS Human protein_coding chr3:44906624 chr3:44906624 synonymous SNV . 0 21 hm5C_associated_SNPs_48725 0 0 1 0 1 TMEM42 chr3:44906532 3'AG 44906532 Downstream 93bp
chr3 127396598 127396598 1 + C T CESC 127396598 + 127396578 127396618 41 GAGCGAGGAGCCAGCGACCTCAGGGGGCCCCCCAGCCGTCA GAGCGAGGAGCCAGCGACCTTAGGGGGCCCCCCAGCCGTCA Direct Loss 0.957835828936571 0 0.94104683 0.92604965 prediction 0.915671657873143 Functional Loss - ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127396598 chr3:127396598 nonsynonymous SNV 0.029 0 21 hm5C_associated_SNPs_48726 0 0 0 0 2 ABTB1 chr3:127396519 3'AG 127396519 Downstream 80bp
chr3 127396598 127396598 1 + C T CESC 127396598 + 127396578 127396618 41 GAGCGAGGAGCCAGCGACCTCAGGGGGCCCCCCAGCCGTCA GAGCGAGGAGCCAGCGACCTTAGGGGGCCCCCCAGCCGTCA Direct Loss 0.957835828936571 0 0.94104683 0.92604965 prediction 0.915671657873143 Functional Loss - ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127396598 chr3:127396598 nonsynonymous SNV 0.029 0 21 hm5C_associated_SNPs_48726 0 0 0 0 2 ABTB1 chr3:127396686 5'GT 127396686 Upstream 89bp
chr13 31506870 31506870 1 + C A LUAD 31506870 + 31506850 31506890 41 AGAATGGAACAGCCTGGGCCCAGGGCTCCGGATCCCTCTCT AGAATGGAACAGCCTGGGCCAAGGGCTCCGGATCCCTCTCT Direct Loss 0.957823719050199 0 0.90836316 0.8418344 prediction 0.915647438100399 Functional Loss - TEX26 ENSG00000175664 CDS Human protein_coding chr13:31506870 chr13:31506870 synonymous SNV . 0 21 hm5C_associated_SNPs_48727 0 0 0 0 1 TEX26 chr13:31506913 5'GT 31506913 Upstream 44bp
chr22 41783378 41783378 1 + C G LUSC 41783378 + 41783358 41783398 41 AGGAAAAGGGGAAGGAAAAGCTGGAGGAGGACGAGGCCGCA AGGAAAAGGGGAAGGAAAAGGTGGAGGAGGACGAGGCCGCA Direct Loss 0.957810934902459 0 0.45964748 0.5126805 prediction 0.915621869804918 Functional Loss - TEF ENSG00000167074 CDS Human protein_coding chr22:41783378 chr22:41783378 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_48728 0 0 0 0 2 TEF chr22:41783340 3'AG 41783340 Downstream 39bp
chr22 41783378 41783378 1 + C G LUSC 41783378 + 41783358 41783398 41 AGGAAAAGGGGAAGGAAAAGCTGGAGGAGGACGAGGCCGCA AGGAAAAGGGGAAGGAAAAGGTGGAGGAGGACGAGGCCGCA Direct Loss 0.957810934902459 0 0.45964748 0.5126805 prediction 0.915621869804918 Functional Loss - TEF ENSG00000167074 CDS Human protein_coding chr22:41783378 chr22:41783378 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_48728 0 0 0 0 2 TEF chr22:41783355 3'AG 41783355 Downstream 24bp
chr11 1857719 1857719 1 + C T SKCM 1857719 + 1857699 1857739 41 TTTCAACTTCAAGCGCTTCTCGGGGCATGAGCCCCTGGGTG TTTCAACTTCAAGCGCTTCTTGGGGCATGAGCCCCTGGGTG Direct Loss 0.957777470928918 0 0.9607042 0.92856956 prediction 0.915554941857836 Functional Loss - SYT8 ENSG00000149043 CDS Human protein_coding chr11:1857719 chr11:1857719 nonsynonymous SNV 0.011 1 21 hm5C_associated_SNPs_48730 0 0 0 0 1 SYT8 chr11:1857655 3'AG 1857655 Downstream 65bp
chr11 36250800 36250800 1 + C T UCEC 36250800 + 36250780 36250820 41 CCCCCCTACCGCTCCCGGTCCGGGAGTGCCAACAGTGCCAG CCCCCCTACCGCTCCCGGTCTGGGAGTGCCAACAGTGCCAG Direct Loss 0.957748002053269 0 0.78275836 0.58739805 prediction 0.915496004106538 Functional Loss - LDLRAD3 ENSG00000179241 CDS Human protein_coding chr11:36250800 chr11:36250800 synonymous SNV . 0 21 hm5C_associated_SNPs_48732 0 0 0 0 1 LDLRAD3 chr11:36250710 3'AG 36250710 Downstream 91bp
chr11 63990865 63990865 1 + C G rs142025489 63990865 + 63990845 63990885 41 CGAATTGTACACGAGTATATCGGGGGCTACATTTTCCTGTC CGAATTGTACACGAGTATATGGGGGGCTACATTTTCCTGTC Direct Loss 0.957745694809832 0 0.96332836 0.9195124 prediction 0.915491389619664 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63990865 chr11:63990865 nonsynonymous SNV 0.904 5 21 hm5C_associated_SNPs_48733 0 0 0 0 1 FERMT3 chr11:63990785 3'AG 63990785 Downstream 81bp
chr12 56863068 56863068 1 + C T rs117958275 56863068 + 56863048 56863088 41 TGGCAGATGTGGACATGTCCCGGGATAGCTGCATTGGTGTT TGGCAGATGTGGACATGTCCTGGGATAGCTGCATTGGTGTT Direct Loss 0.957694428456829 0 0.8305094 0.74515 prediction 0.915388856913657 Functional Loss - SPRYD4 ENSG00000176422 CDS Human protein_coding chr12:56863068 chr12:56863068 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_48738 0 0 1 0 1 SPRYD4 chr12:56862992 3'AG 56862992 Downstream 77bp
chr19 39215092 39215092 1 + C T HNSC 39215092 + 39215072 39215112 41 TGCAGCAGCTGGTGCCAAAACGGGACCATGCCCTCCTGGAG TGCAGCAGCTGGTGCCAAAATGGGACCATGCCCTCCTGGAG Direct Loss 0.957658884889474 0 0.90992206 0.78693473 prediction 0.915317769778947 Functional Loss - ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215092 chr19:39215092 nonsynonymous SNV 0.978 4 21 hm5C_associated_SNPs_48741 0 0 1 0 1 ACTN4 chr19:39215071 3'AG 39215071 Downstream 22bp
chr5 6449328 6449328 1 + C T COAD 6449328 + 6449308 6449348 41 ACACCGTGGAGGCCGTCATGCGCCAGTTCGCAGCCAGCCTG ACACCGTGGAGGCCGTCATGTGCCAGTTCGCAGCCAGCCTG Direct Loss 0.957656628770365 0 0.13549328 0.08983368 prediction 0.915313257540729 Functional Loss - UBE2QL1 ENSG00000215218 CDS Human protein_coding chr5:6449328 chr5:6449328 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_48742 0 0 0 0 1 UBE2QL1 chr5:6449360 5'GT 6449360 Upstream 33bp
chr19 50961953 50961953 1 + C G CESC 50961953 + 50961933 50961973 41 CGAGTAGTTGGGGTCAACATCGCGGGGCGCAGCGAGCCGGC CGAGTAGTTGGGGTCAACATGGCGGGGCGCAGCGAGCCGGC Direct Loss 0.957652286613578 0 0.9366548 0.87237847 prediction 0.915304573227157 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50961953 chr19:50961953 nonsynonymous SNV 0.995 0 21 hm5C_associated_SNPs_48743 0 0 0 0 1 MYBPC2 chr19:50962011 5'GT 50962011 Upstream 59bp
chr2 220098090 220098090 1 + C T COAD 220098090 + 220098070 220098110 41 CCCAGGGGCTTCGGGATGCCCGAGGTGGGCCATCACACTCT CCCAGGGGCTTCGGGATGCCTGAGGTGGGCCATCACACTCT Direct Loss 0.957647515428477 0 0.8912562 0.8184854 prediction 0.915295030856953 Functional Loss - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220098090 chr2:220098090 stopgain 0.646 1 21 hm5C_associated_SNPs_48744 0 0 1 0 2 ANKZF1 chr2:220098008 3'AG 220098008 Downstream 83bp
chr2 220098090 220098090 1 + C T COAD 220098090 + 220098070 220098110 41 CCCAGGGGCTTCGGGATGCCCGAGGTGGGCCATCACACTCT CCCAGGGGCTTCGGGATGCCTGAGGTGGGCCATCACACTCT Direct Loss 0.957647515428477 0 0.8912562 0.8184854 prediction 0.915295030856953 Functional Loss - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220098090 chr2:220098090 stopgain 0.646 1 21 hm5C_associated_SNPs_48744 0 0 1 0 2 ANKZF1 chr2:220098155 5'GT 220098155 Upstream 66bp
chr11 1973375 1973375 1 + C T BLCA 1973375 + 1973355 1973395 41 AGAATGACAAGGGTGGACCTCAGGAATTACCTCGAGGGCAT AGAATGACAAGGGTGGACCTTAGGAATTACCTCGAGGGCAT Direct Loss 0.957642863190945 0 0.4510627 0.14537087 prediction 0.91528572638189 Functional Loss - MRPL23 ENSG00000214026 CDS Human protein_coding chr11:1973375 chr11:1973375 synonymous SNV . 0 21 hm5C_associated_SNPs_48746 0 0 1 0 2 MRPL23 chr11:1973357 3'AG 1973357 Downstream 19bp
chr11 1973375 1973375 1 + C T BLCA 1973375 + 1973355 1973395 41 AGAATGACAAGGGTGGACCTCAGGAATTACCTCGAGGGCAT AGAATGACAAGGGTGGACCTTAGGAATTACCTCGAGGGCAT Direct Loss 0.957642863190945 0 0.4510627 0.14537087 prediction 0.91528572638189 Functional Loss - MRPL23 ENSG00000214026 CDS Human protein_coding chr11:1973375 chr11:1973375 synonymous SNV . 0 21 hm5C_associated_SNPs_48746 0 0 1 0 2 MRPL23 chr11:1973439 5'GT 1973439 Upstream 65bp
chr19 45851959 45851959 1 + C T UCEC 45851959 + 45851939 45851979 41 TCCATGATGCCCTGCAGATCCGGGAGCAGACGCTGGGCCCT TCCATGATGCCCTGCAGATCTGGGAGCAGACGCTGGGCCCT Direct Loss 0.957631605154157 0 0.9304091 0.91216177 prediction 0.915263210308314 Functional Loss - KLC3 ENSG00000104892 CDS Human protein_coding chr19:45851959 chr19:45851959 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_48749 0 0 0 0 2 KLC3 chr19:45851904 3'AG 45851904 Downstream 56bp
chr19 45851959 45851959 1 + C T UCEC 45851959 + 45851939 45851979 41 TCCATGATGCCCTGCAGATCCGGGAGCAGACGCTGGGCCCT TCCATGATGCCCTGCAGATCTGGGAGCAGACGCTGGGCCCT Direct Loss 0.957631605154157 0 0.9304091 0.91216177 prediction 0.915263210308314 Functional Loss - KLC3 ENSG00000104892 CDS Human protein_coding chr19:45851959 chr19:45851959 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_48749 0 0 0 0 2 KLC3 chr19:45851991 5'GT 45851991 Upstream 33bp
chr2 96933066 96933066 1 + C T UCEC 96933066 + 96933046 96933086 41 GCTCCGCCTTTAGGTGACAGCTGGATCTGCAAGTCTGTCCT GCTCCGCCTTTAGGTGACAGTTGGATCTGCAAGTCTGTCCT Direct Loss 0.957588419431266 0 0.59647006 0.4106691 prediction 0.915176838862532 Functional Loss - CIAO1 ENSG00000144021 CDS Human protein_coding chr2:96933066 chr2:96933066 synonymous SNV . 0 21 hm5C_associated_SNPs_48755 0 0 1 0 1 CIAO1 chr2:96933059 3'AG 96933059 Downstream 8bp
chr1 173455477 173455477 1 + C T BLCA 173455477 + 173455457 173455497 41 AGGAACTTTGATGAGATTCTCAGGGTAGTCATCTCTCTCCA AGGAACTTTGATGAGATTCTTAGGGTAGTCATCTCTCTCCA Direct Loss 0.957556036318795 0 0.93605226 0.899577 prediction 0.915112072637589 Functional Loss - PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173455477 chr1:173455477 synonymous SNV . 0 21 hm5C_associated_SNPs_48759 0 0 1 0 2 PRDX6 chr1:173455394 3'AG 173455394 Downstream 84bp
chr1 173455477 173455477 1 + C T BLCA 173455477 + 173455457 173455497 41 AGGAACTTTGATGAGATTCTCAGGGTAGTCATCTCTCTCCA AGGAACTTTGATGAGATTCTTAGGGTAGTCATCTCTCTCCA Direct Loss 0.957556036318795 0 0.93605226 0.899577 prediction 0.915112072637589 Functional Loss - PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173455477 chr1:173455477 synonymous SNV . 0 21 hm5C_associated_SNPs_48759 0 0 1 0 2 PRDX6 chr1:173455540 5'GT 173455540 Upstream 64bp
chr8 24256516 24256516 1 + C T SKCM 24256516 + 24256496 24256536 41 TGAGATGGCACAGTTCTAACCTGGGGAAAAAGATCCACGAC TGAGATGGCACAGTTCTAACTTGGGGAAAAAGATCCACGAC Direct Loss 0.957544916076506 0 0.7460475 0.8565899 prediction 0.915089832153012 Functional Loss - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24256516 chr8:24256516 synonymous SNV . 0 21 hm5C_associated_SNPs_48761 0 0 0 0 1 ADAMDEC1 chr8:24256553 5'GT 24256553 Upstream 38bp
chr1 197887022 197887022 1 + C T PCPG 197887022 + 197887002 197887042 41 CCCCCAGCCATGCTCTTTCACGGGATCTCCGGAGGCCACAT CCCCCAGCCATGCTCTTTCATGGGATCTCCGGAGGCCACAT Direct Loss 0.957542643556443 0 0.9143644 0.85582006 prediction 0.915085287112885 Functional Loss - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197887022 chr1:197887022 synonymous SNV . 0 21 hm5C_associated_SNPs_48762 0 0 0 1 1 LHX9 chr1:197887009 3'AG 197887009 Downstream 14bp
chr2 234243696 234243696 1 + C T SKCM 234243696 + 234243676 234243716 41 GAGAAAGGAGAGGCATTGCCCTGGATGGGAAAATCAAGCAC GAGAAAGGAGAGGCATTGCCTTGGATGGGAAAATCAAGCAC Direct Loss 0.957534226380319 0 0.12375894 0.107441604 prediction 0.915068452760638 Functional Loss - SAG ENSG00000130561 CDS Human protein_coding chr2:234243696 chr2:234243696 synonymous SNV . 0 21 hm5C_associated_SNPs_48763 0 0 0 0 2 SAG chr2:234243608 3'AG 234243608 Downstream 89bp
chr2 234243696 234243696 1 + C T SKCM 234243696 + 234243676 234243716 41 GAGAAAGGAGAGGCATTGCCCTGGATGGGAAAATCAAGCAC GAGAAAGGAGAGGCATTGCCTTGGATGGGAAAATCAAGCAC Direct Loss 0.957534226380319 0 0.12375894 0.107441604 prediction 0.915068452760638 Functional Loss - SAG ENSG00000130561 CDS Human protein_coding chr2:234243696 chr2:234243696 synonymous SNV . 0 21 hm5C_associated_SNPs_48763 0 0 0 0 2 SAG chr2:234243745 5'GT 234243745 Upstream 50bp
chr20 31763324 31763324 1 + C T UCEC 31763324 + 31763304 31763344 41 GTTGCCGTCCTGGGAGAATGCGCCAGTGACCCAACCAGCAT GTTGCCGTCCTGGGAGAATGTGCCAGTGACCCAACCAGCAT Direct Loss 0.957523012859743 0 0.34764335 0.15755829 prediction 0.915046025719487 Functional Loss - BPIFA2 ENSG00000131050 CDS Human protein_coding chr20:31763324 chr20:31763324 synonymous SNV . 0 21 hm5C_associated_SNPs_48765 0 0 0 0 1 BPIFA2 chr20:31763365 5'GT 31763365 Upstream 42bp
chr19 4422713 4422713 1 + C T COAD 4422713 + 4422693 4422733 41 AAAAGGAGAGGCGGGAGAAGCGGGAGAAGGATGAGAAGGAG AAAAGGAGAGGCGGGAGAAGTGGGAGAAGGATGAGAAGGAG Direct Loss 0.957498644985486 0 0.8969395 0.86158955 prediction 0.914997289970971 Functional Loss - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4422713 chr19:4422713 nonsynonymous SNV 0.963 3 21 hm5C_associated_SNPs_48767 0 0 1 0 1 CHAF1A chr19:4422792 5'GT 4422792 Upstream 80bp
chr10 135051581 135051581 1 + C A LUAD 135051581 + 135051561 135051601 41 CAGGCCAGACATCCGGCGCCCGGGAGCCCCCTCAGGCCGTC CAGGCCAGACATCCGGCGCCAGGGAGCCCCCTCAGGCCGTC Direct Loss 0.957471830177406 0 0.8495214 0.8256872 prediction 0.914943660354811 Functional Loss - VENTX ENSG00000151650 CDS Human protein_coding chr10:135051581 chr10:135051581 synonymous SNV . 0 21 hm5C_associated_SNPs_48771 0 0 0 0 1 VENTX chr10:135051659 5'GT 135051659 Upstream 79bp
chr10 122334704 122334704 1 + C T UCEC 122334704 + 122334684 122334724 41 GGCAAGCTGCACTGCTTCACCGAGAGTGGGCGGGGAAAGAG GGCAAGCTGCACTGCTTCACTGAGAGTGGGCGGGGAAAGAG Direct Loss 0.957462031389961 0 0.8437458 0.50691575 prediction 0.914924062779921 Functional Loss - PLPP4 ENSG00000203805 CDS Human protein_coding chr10:122334704 chr10:122334704 synonymous SNV . 0 21 hm5C_associated_SNPs_48772 0 0 0 0 1 PLPP4 chr10:122334643 3'AG 122334643 Downstream 62bp
chr9 99227685 99227685 1 + C T rs34274515 99227685 + 99227665 99227705 41 GGCCCGAGAGGGGGTATGCGCGGCAGAGGCAGAGGTGGCCC GGCCCGAGAGGGGGTATGCGTGGCAGAGGCAGAGGTGGCCC Direct Loss 0.957454866084419 0 0.8951394 0.8465112 prediction 0.914909732168837 Functional Loss - HABP4 ENSG00000130956 CDS Human protein_coding chr9:99227685 chr9:99227685 synonymous SNV . 0 21 hm5C_associated_SNPs_48773 0 0 1 0 2 HABP4 chr9:99227619 3'AG 99227619 Downstream 67bp
chr9 99227685 99227685 1 + C T rs34274515 99227685 + 99227665 99227705 41 GGCCCGAGAGGGGGTATGCGCGGCAGAGGCAGAGGTGGCCC GGCCCGAGAGGGGGTATGCGTGGCAGAGGCAGAGGTGGCCC Direct Loss 0.957454866084419 0 0.8951394 0.8465112 prediction 0.914909732168837 Functional Loss - HABP4 ENSG00000130956 CDS Human protein_coding chr9:99227685 chr9:99227685 synonymous SNV . 0 21 hm5C_associated_SNPs_48773 0 0 1 0 2 HABP4 chr9:99227780 5'GT 99227780 Upstream 96bp
chr4 1801486 1801486 1 + C T HNSC 1801486 + 1801466 1801506 41 CCTTGCAGACGCTCCATCCTCGGGAGATGACGAAGACGGGG CCTTGCAGACGCTCCATCCTTGGGAGATGACGAAGACGGGG Direct Loss 0.957435226712887 0 0.93405694 0.91317874 prediction 0.914870453425773 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1801486 chr4:1801486 nonsynonymous SNV 0.818 4 21 hm5C_associated_SNPs_48774 0 0 1 0 2 FGFR3 chr4:1801474 3'AG 1801474 Downstream 13bp
chr4 1801486 1801486 1 + C T HNSC 1801486 + 1801466 1801506 41 CCTTGCAGACGCTCCATCCTCGGGAGATGACGAAGACGGGG CCTTGCAGACGCTCCATCCTTGGGAGATGACGAAGACGGGG Direct Loss 0.957435226712887 0 0.93405694 0.91317874 prediction 0.914870453425773 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1801486 chr4:1801486 nonsynonymous SNV 0.818 4 21 hm5C_associated_SNPs_48774 0 0 1 0 2 FGFR3 chr4:1801539 5'GT 1801539 Upstream 54bp
chr4 184366145 184366145 1 + C T rs11539203 184366145 + 184366125 184366165 41 GAAGCTGCCGACGCCGAGAGCGGGACCCGAAACCGGCAGCT GAAGCTGCCGACGCCGAGAGTGGGACCCGAAACCGGCAGCT Direct Loss 0.957430152010645 0 0.937333 0.924796 prediction 0.91486030402129 Functional Loss - CDKN2AIP ENSG00000168564 CDS Human protein_coding chr4:184366145 chr4:184366145 synonymous SNV . 0 21 hm5C_associated_SNPs_48775 0 0 0 0 1 CDKN2AIP chr4:184366222 5'GT 184366222 Upstream 78bp
chr5 3596413 3596413 1 + C T STAD 3596413 + 3596393 3596433 41 CTCGGTGCTGGGCATGTACGCGGCGGCGGGGCCGTACGCGG CTCGGTGCTGGGCATGTACGTGGCGGCGGGGCCGTACGCGG Direct Loss 0.957429361614692 0 0.9173899 0.90593266 prediction 0.914858723229385 Functional Loss - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3596413 chr5:3596413 nonsynonymous SNV 0.982 1 21 hm5C_associated_SNPs_48776 0 0 0 0 1 IRX1 chr5:3596495 5'GT 3596495 Upstream 83bp
chr20 43561765 43561765 1 + C T BLCA 43561765 + 43561745 43561785 41 CGGCGCCCCCCGGCCCACATCAGCAGTGTCAGGCAGGCCTC CGGCGCCCCCCGGCCCACATTAGCAGTGTCAGGCAGGCCTC Direct Loss 0.957429023197428 0 0.91937625 0.8747398 prediction 0.914858046394857 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43561765 chr20:43561765 synonymous SNV . 0 21 hm5C_associated_SNPs_48777 0 0 1 0 3 PABPC1L chr20:43561698 3'AG 43561698 Downstream 68bp
chr20 43561765 43561765 1 + C T BLCA 43561765 + 43561745 43561785 41 CGGCGCCCCCCGGCCCACATCAGCAGTGTCAGGCAGGCCTC CGGCGCCCCCCGGCCCACATTAGCAGTGTCAGGCAGGCCTC Direct Loss 0.957429023197428 0 0.91937625 0.8747398 prediction 0.914858046394857 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43561765 chr20:43561765 synonymous SNV . 0 21 hm5C_associated_SNPs_48777 0 0 1 0 3 PABPC1L chr20:43561713 3'AG 43561713 Downstream 53bp
chr20 43561765 43561765 1 + C T BLCA 43561765 + 43561745 43561785 41 CGGCGCCCCCCGGCCCACATCAGCAGTGTCAGGCAGGCCTC CGGCGCCCCCCGGCCCACATTAGCAGTGTCAGGCAGGCCTC Direct Loss 0.957429023197428 0 0.91937625 0.8747398 prediction 0.914858046394857 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43561765 chr20:43561765 synonymous SNV . 0 21 hm5C_associated_SNPs_48777 0 0 1 0 3 PABPC1L chr20:43561826 5'GT 43561826 Upstream 62bp
chr4 187209614 187209614 1 + C T BLCA 187209614 + 187209594 187209634 41 CCCCTCGTTCTAGGGAGATTCGGGAGGCCCTCTGTCCTGCA CCCCTCGTTCTAGGGAGATTTGGGAGGCCCTCTGTCCTGCA Direct Loss 0.95742615680314 0 0.9196402 0.9010215 prediction 0.91485231360628 Functional Loss - F11 ENSG00000088926 CDS Human protein_coding chr4:187209614 chr4:187209614 nonsynonymous SNV 0.229 5 21 hm5C_associated_SNPs_48778 2 0 1 0 1 F11 chr4:187209607 3'AG 187209607 Downstream 8bp
chr19 4258395 4258395 1 + C G UCEC 4258395 + 4258375 4258415 41 AGGAGCGGCGGAGGCAGCAGCAGGAGGAGGACGAGCAGGAG AGGAGCGGCGGAGGCAGCAGGAGGAGGAGGACGAGCAGGAG Direct Loss 0.957323368344069 0 0.9236536 0.92798746 prediction 0.914646736688138 Functional Loss - CCDC94 ENSG00000105248 CDS Human protein_coding chr19:4258395 chr19:4258395 nonsynonymous SNV 0.057 0 21 hm5C_associated_SNPs_48788 0 0 1 0 1 CCDC94 chr19:4258420 5'GT 4258420 Upstream 26bp
chr16 77769815 77769815 1 + C A LUSC 77769815 + 77769795 77769835 41 CCACAGCTCTCCGGGAAGCCCAGGAGGAAGTGGGTCTCCGT CCACAGCTCTCCGGGAAGCCAAGGAGGAAGTGGGTCTCCGT Direct Loss 0.957311280591482 0 0.9116816 0.8296266 prediction 0.914622561182965 Functional Loss - NUDT7 ENSG00000140876 CDS Human protein_coding chr16:77769815 chr16:77769815 nonsynonymous SNV 0.993 1 21 hm5C_associated_SNPs_48790 0 0 0 0 2 NUDT7 chr16:77769725 3'AG 77769725 Downstream 91bp
chr16 77769815 77769815 1 + C A LUSC 77769815 + 77769795 77769835 41 CCACAGCTCTCCGGGAAGCCCAGGAGGAAGTGGGTCTCCGT CCACAGCTCTCCGGGAAGCCAAGGAGGAAGTGGGTCTCCGT Direct Loss 0.957311280591482 0 0.9116816 0.8296266 prediction 0.914622561182965 Functional Loss - NUDT7 ENSG00000140876 CDS Human protein_coding chr16:77769815 chr16:77769815 nonsynonymous SNV 0.993 1 21 hm5C_associated_SNPs_48790 0 0 0 0 2 NUDT7 chr16:77769883 5'GT 77769883 Upstream 69bp
chr7 150772487 150772487 1 - G A OV 150772487 - 150772467 150772507 41 CATGACAGTGAGCGCGTTGGCGTGAGTGACAGAGCGGACAG CATGACAGTGAGCGCGTTGGTGTGAGTGACAGAGCGGACAG Direct Loss 0.957310003728137 0 0.30421045 0.2476643 prediction 0.914620007456274 Functional Loss - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150772487 chr7:150772487 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_48791 0 0 1 0 1 SLC4A2 chr7:150772523 3'AG 150772523 Downstream 37bp
chr2 219268015 219268015 1 + C T BLCA 219268015 + 219267995 219268035 41 CCTTCCGGGCCCGGCTGTTTCGAGAGTCCTGCGTCTTCCAC CCTTCCGGGCCCGGCTGTTTTGAGAGTCCTGCGTCTTCCAC Direct Loss 0.957285534341953 0 0.9502516 0.9277731 prediction 0.914571068683906 Functional Loss - CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219268015 chr2:219268015 stopgain 0.997 1 21 hm5C_associated_SNPs_48793 0 0 1 0 1 CTDSP1 chr2:219267955 3'AG 219267955 Downstream 61bp
chr22 37261048 37261048 1 + C T STAD 37261048 + 37261028 37261068 41 TCCATGCTTTGCAGAGCAAGCTGGAGGAGCGCTTCGGGCCA TCCATGCTTTGCAGAGCAAGTTGGAGGAGCGCTTCGGGCCA Direct Loss 0.95724586581618 0 0.86102086 0.7826599 prediction 0.91449173163236 Functional Loss - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37261048 chr22:37261048 synonymous SNV . 0 21 hm5C_associated_SNPs_48797 0 0 0 0 2 NCF4 chr22:37260961 3'AG 37260961 Downstream 88bp
chr22 37261048 37261048 1 + C T STAD 37261048 + 37261028 37261068 41 TCCATGCTTTGCAGAGCAAGCTGGAGGAGCGCTTCGGGCCA TCCATGCTTTGCAGAGCAAGTTGGAGGAGCGCTTCGGGCCA Direct Loss 0.95724586581618 0 0.86102086 0.7826599 prediction 0.91449173163236 Functional Loss - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37261048 chr22:37261048 synonymous SNV . 0 21 hm5C_associated_SNPs_48797 0 0 0 0 2 NCF4 chr22:37261114 5'GT 37261114 Upstream 67bp
chr3 9960070 9960070 1 + C T rs708567 9960070 + 9960050 9960090 41 GTTTGGAGGAGCAGCTGACTCAGGGGTGGAGGAGCCTAGGA GTTTGGAGGAGCAGCTGACTTAGGGGTGGAGGAGCCTAGGA Direct Loss 0.957238882344985 0 0.93523467 0.905218 prediction 0.914477764689971 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9960070 chr3:9960070 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_48798 0 0 1 2 2 IL17RC chr3:9960019 3'AG 9960019 Downstream 52bp
chr3 9960070 9960070 1 + C T rs708567 9960070 + 9960050 9960090 41 GTTTGGAGGAGCAGCTGACTCAGGGGTGGAGGAGCCTAGGA GTTTGGAGGAGCAGCTGACTTAGGGGTGGAGGAGCCTAGGA Direct Loss 0.957238882344985 0 0.93523467 0.905218 prediction 0.914477764689971 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9960070 chr3:9960070 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_48798 0 0 1 2 2 IL17RC chr3:9960093 5'GT 9960093 Upstream 24bp
chr17 34901624 34901624 1 + C T UCEC 34901624 + 34901604 34901644 41 GGGGAGGAGGAGTTCCCCTTCGAGAGGAGGCAGATTCCCCT GGGGAGGAGGAGTTCCCCTTTGAGAGGAGGCAGATTCCCCT Direct Loss 0.95722882161572 0 0.91082513 0.8012551 prediction 0.914457643231441 Functional Loss - GGNBP2 ENSG00000005955 CDS Human other chr17:34901624 chr17:34901624 synonymous SNV . 0 21 hm5C_associated_SNPs_48800 0 0 1 0 1 GGNBP2 chr17:34901666 5'GT 34901666 Upstream 43bp
chr15 72104192 72104192 1 + C T UCEC 72104192 + 72104172 72104212 41 GCTGAAGAAGTGCCTGCAGGCGGGGATGAACCAGGACGGTG GCTGAAGAAGTGCCTGCAGGTGGGGATGAACCAGGACGGTG Direct Loss 0.95722819721398 0 0.9134007 0.8878267 prediction 0.91445639442796 Functional Loss - NR2E3 ENSG00000031544 ncRNA_exonic Human other chr15:72104192 chr15:72104192 . 0.978 1 21 hm5C_associated_SNPs_48803 2 0 0 0 2 NR2E3 chr15:72104106 3'AG 72104106 Downstream 87bp
chr15 72104192 72104192 1 + C T UCEC 72104192 + 72104172 72104212 41 GCTGAAGAAGTGCCTGCAGGCGGGGATGAACCAGGACGGTG GCTGAAGAAGTGCCTGCAGGTGGGGATGAACCAGGACGGTG Direct Loss 0.95722819721398 0 0.9134007 0.8878267 prediction 0.91445639442796 Functional Loss - NR2E3 ENSG00000031544 ncRNA_exonic Human other chr15:72104192 chr15:72104192 . 0.978 1 21 hm5C_associated_SNPs_48803 2 0 0 0 2 NR2E3 chr15:72104209 5'GT 72104209 Upstream 18bp
chr6 27806769 27806769 1 + C T LUSC 27806769 + 27806749 27806789 41 CCAGGGGAGCTGGCCAAGCACGCGGTGTCGGAGGGCACCAA CCAGGGGAGCTGGCCAAGCATGCGGTGTCGGAGGGCACCAA Direct Loss 0.957228165919104 0 0.9151159 0.9082012 prediction 0.914456331838207 Functional Loss - HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806769 chr6:27806769 synonymous SNV . 0 21 hm5C_associated_SNPs_48804 0 0 1 0 2 HIST1H2BN chr6:27806816 5'GT 27806816 Upstream 48bp
chr6 27806769 27806769 1 + C T LUSC 27806769 + 27806749 27806789 41 CCAGGGGAGCTGGCCAAGCACGCGGTGTCGGAGGGCACCAA CCAGGGGAGCTGGCCAAGCATGCGGTGTCGGAGGGCACCAA Direct Loss 0.957228165919104 0 0.9151159 0.9082012 prediction 0.914456331838207 Functional Loss - HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806769 chr6:27806769 synonymous SNV . 0 21 hm5C_associated_SNPs_48804 0 0 1 0 2 HIST1H2BN chr6:27806843 5'GT 27806843 Upstream 75bp
chr10 7763735 7763735 1 + C A ACC 7763735 + 7763715 7763755 41 GAGAAGAGAAGGCTGGTGAACTGGAGGTGAGTGCACACCGG GAGAAGAGAAGGCTGGTGAAATGGAGGTGAGTGCACACCGG Direct Loss 0.957217448256903 0 0.89233816 0.89601123 prediction 0.914434896513805 Functional Loss - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7763735 chr10:7763735 nonsynonymous SNV 0.239 4 21 hm5C_associated_SNPs_48805 0 0 1 0 1 ITIH2 chr10:7763740 5'GT 7763740 Upstream 6bp
chr5 96237351 96237351 1 + C T SKCM 96237351 + 96237331 96237371 41 GCTTCCTCCAGGGGGTTTTCCAGGAAGACCCTGAATGGAGG GCTTCCTCCAGGGGGTTTTCTAGGAAGACCCTGAATGGAGG Direct Loss 0.957209382009708 0 0.9088402 0.8536009 prediction 0.914418764019415 Functional Loss - ERAP2 ENSG00000164308 CDS Human protein_coding chr5:96237351 chr5:96237351 stopgain 0.894 0 21 hm5C_associated_SNPs_48806 0 0 0 0 1 ERAP2 chr5:96237385 5'GT 96237385 Upstream 35bp
chr3 63898895 63898895 1 + C A COAD 63898895 + 63898875 63898915 41 GCGAAGTCATGGGGCTCTGTCGGGAAGGTGAGTCCAGCCCC GCGAAGTCATGGGGCTCTGTAGGGAAGGTGAGTCCAGCCCC Direct Loss 0.957167392225647 0 0.9262108 0.5857989 prediction 0.914334784451293 Functional Loss - ATXN7 ENSG00000163635 CDS Human protein_coding chr3:63898895 chr3:63898895 synonymous SNV . 0 21 hm5C_associated_SNPs_48810 0 0 1 0 2 ATXN7 chr3:63898833 3'AG 63898833 Downstream 63bp
chr3 63898895 63898895 1 + C A COAD 63898895 + 63898875 63898915 41 GCGAAGTCATGGGGCTCTGTCGGGAAGGTGAGTCCAGCCCC GCGAAGTCATGGGGCTCTGTAGGGAAGGTGAGTCCAGCCCC Direct Loss 0.957167392225647 0 0.9262108 0.5857989 prediction 0.914334784451293 Functional Loss - ATXN7 ENSG00000163635 CDS Human protein_coding chr3:63898895 chr3:63898895 synonymous SNV . 0 21 hm5C_associated_SNPs_48810 0 0 1 0 2 ATXN7 chr3:63898901 5'GT 63898901 Upstream 7bp
chr17 58506771 58506771 1 + C A LUAD 58506771 + 58506751 58506791 41 AGAGGTCCTTGCTGGCCGACCGGGAAGACAGTCTGCCCAAG AGAGGTCCTTGCTGGCCGACAGGGAAGACAGTCTGCCCAAG Direct Loss 0.957163816129615 0 0.90348184 0.8926932 prediction 0.914327632259229 Functional Loss - C17orf64 ENSG00000141371 CDS Human protein_coding chr17:58506771 chr17:58506771 synonymous SNV . 0 21 hm5C_associated_SNPs_48811 0 0 0 0 1 C17orf64 chr17:58506723 3'AG 58506723 Downstream 49bp
chr15 79165480 79165480 1 + C T rs555391005 79165480 + 79165460 79165500 41 GGTGATTGAGGCTTGAGGGCCGGGGGCGGCGCGGGCTGCGC GGTGATTGAGGCTTGAGGGCTGGGGGCGGCGCGGGCTGCGC Direct Loss 0.95714608202257 0 0.9017401 0.86993706 prediction 0.91429216404514 Functional Loss - MORF4L1 ENSG00000185787 UTR5 Human protein_coding chr15:79165480 chr15:79165480 . . 0 21 hm5C_associated_SNPs_48813 0 0 1 0 2 MORF4L1 chr15:79165399 3'AG 79165399 Downstream 82bp
chr15 79165480 79165480 1 + C T rs555391005 79165480 + 79165460 79165500 41 GGTGATTGAGGCTTGAGGGCCGGGGGCGGCGCGGGCTGCGC GGTGATTGAGGCTTGAGGGCTGGGGGCGGCGCGGGCTGCGC Direct Loss 0.95714608202257 0 0.9017401 0.86993706 prediction 0.91429216404514 Functional Loss - MORF4L1 ENSG00000185787 UTR5 Human protein_coding chr15:79165480 chr15:79165480 . . 0 21 hm5C_associated_SNPs_48813 0 0 1 0 2 MORF4L1 chr15:79165560 5'GT 79165560 Upstream 81bp
chr12 57167880 57167880 1 + C G BRCA 57167880 + 57167860 57167900 41 ACAGGCTGGAGACGGTGACCCTGGATGTTACCAAGATGGAG ACAGGCTGGAGACGGTGACCGTGGATGTTACCAAGATGGAG Direct Loss 0.95714152528592 0 0.11085892 0.1582658 prediction 0.914283050571839 Functional Loss - HSD17B6 ENSG00000025423 CDS Human protein_coding chr12:57167880 chr12:57167880 nonsynonymous SNV 0.945 5 21 hm5C_associated_SNPs_48814 0 0 0 0 1 HSD17B6 chr12:57167949 5'GT 57167949 Upstream 70bp
chr16 129665 129665 1 + C T UCEC 129665 + 129645 129685 41 GTTGGAGTTCTTCGACCAGCCGGCAGTCCCCCTGGCCCGGG GTTGGAGTTCTTCGACCAGCTGGCAGTCCCCCTGGCCCGGG Direct Loss 0.95709202958593 0 0.49002105 0.24440521 prediction 0.91418405917186 Functional Loss - MPG ENSG00000103152 CDS Human protein_coding chr16:129665 chr16:129665 nonsynonymous SNV 0.184 4 21 hm5C_associated_SNPs_48820 0 0 1 0 1 MPG chr16:129699 5'GT 129699 Upstream 35bp
chr11 31805009 31805009 1 + C T LGG 31805009 + 31804989 31805029 41 AAAATGGATCTGGCAGAATCCGCCAAGCGGCTGGGCCCAGG AAAATGGATCTGGCAGAATCTGCCAAGCGGCTGGGCCCAGG Direct Loss 0.957056593894434 0 0.7751546 0.0929614 prediction 0.914113187788868 Functional Loss - ELP4 ENSG00000109911 CDS Human protein_coding chr11:31805009 chr11:31805009 nonsynonymous SNV 0.473 1 21 hm5C_associated_SNPs_48821 0 0 0 0 1 ELP4 chr11:31804941 3'AG 31804941 Downstream 69bp
chr19 14674683 14674683 1 + C T UCEC 14674683 + 14674663 14674703 41 CCACGGCCACACTGTACTTCCGGGACCTGGGGGCCCAGATC CCACGGCCACACTGTACTTCTGGGACCTGGGGGCCCAGATC Direct Loss 0.957056117695414 0 0.90441895 0.73663104 prediction 0.914112235390828 Functional Loss - TECR ENSG00000099797 CDS Human protein_coding chr19:14674683 chr19:14674683 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_48822 0 0 1 0 2 TECR chr19:14674612 3'AG 14674612 Downstream 72bp
chr19 14674683 14674683 1 + C T UCEC 14674683 + 14674663 14674703 41 CCACGGCCACACTGTACTTCCGGGACCTGGGGGCCCAGATC CCACGGCCACACTGTACTTCTGGGACCTGGGGGCCCAGATC Direct Loss 0.957056117695414 0 0.90441895 0.73663104 prediction 0.914112235390828 Functional Loss - TECR ENSG00000099797 CDS Human protein_coding chr19:14674683 chr19:14674683 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_48822 0 0 1 0 2 TECR chr19:14674715 5'GT 14674715 Upstream 33bp
chr1 1222549 1222549 1 + C T SKCM 1222549 + 1222529 1222569 41 CGTCAGGCGTGGCGGCTGTCCAGGACTGGTACCACTTCCAC CGTCAGGCGTGGCGGCTGTCTAGGACTGGTACCACTTCCAC Direct Loss 0.957054821775934 0 0.9267926 0.9084984 prediction 0.914109643551868 Functional Loss - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1222549 chr1:1222549 stopgain 0.000 0 21 hm5C_associated_SNPs_48824 0 0 0 0 1 SCNN1D chr1:1222489 3'AG 1222489 Downstream 61bp
chr19 40097939 40097939 1 + C T UCEC 40097939 + 40097919 40097959 41 TGTGAAGATGGTGCAAGTGTCGAGAGATATCTCCCTGACCT TGTGAAGATGGTGCAAGTGTTGAGAGATATCTCCCTGACCT Direct Loss 0.957048368423574 0 0.9301419 0.85012424 prediction 0.914096736847147 Functional Loss - LGALS13 ENSG00000105198 CDS Human protein_coding chr19:40097939 chr19:40097939 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_48825 0 0 0 0 1 LGALS13 chr19:40097863 3'AG 40097863 Downstream 77bp
chr19 19638863 19638863 1 + C T STAD 19638863 + 19638843 19638883 41 CGCTGGGTGCCCCCCTTGATCGGGGAGCTGTACGGGCTGCG CGCTGGGTGCCCCCCTTGATTGGGGAGCTGTACGGGCTGCG Direct Loss 0.957042752976342 0 0.9637331 0.94087684 prediction 0.914085505952685 Functional Loss - NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19638863 chr19:19638863 synonymous SNV . 0 21 hm5C_associated_SNPs_48826 0 0 1 0 2 NDUFA13 chr19:19638816 3'AG 19638816 Downstream 48bp
chr19 19638863 19638863 1 + C T STAD 19638863 + 19638843 19638883 41 CGCTGGGTGCCCCCCTTGATCGGGGAGCTGTACGGGCTGCG CGCTGGGTGCCCCCCTTGATTGGGGAGCTGTACGGGCTGCG Direct Loss 0.957042752976342 0 0.9637331 0.94087684 prediction 0.914085505952685 Functional Loss - NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19638863 chr19:19638863 synonymous SNV . 0 21 hm5C_associated_SNPs_48826 0 0 1 0 2 NDUFA13 chr19:19638925 5'GT 19638925 Upstream 63bp
chr17 78388983 78388983 1 + C A rs374446721 78388983 + 78388963 78389003 41 TGACGTGCGGAAGGGGTGCCCGGGACGAAGCCATGGCCCTG TGACGTGCGGAAGGGGTGCCAGGGACGAAGCCATGGCCCTG Direct Loss 0.9570397804017 0 0.8855996 0.89216346 prediction 0.9140795608034 Functional Loss - ENDOV ENSG00000173818 UTR5 Human protein_coding chr17:78388983 chr17:78388983 . . 0 21 hm5C_associated_SNPs_48827 0 0 0 0 1 ENDOV chr17:78389050 5'GT 78389050 Upstream 68bp
chr19 49464847 49464847 1 + C T STAD 49464847 + 49464827 49464867 41 GACCGTGACCATCTTTGTGGCGGGAGTGCTCACCGCCTCAC GACCGTGACCATCTTTGTGGTGGGAGTGCTCACCGCCTCAC Direct Loss 0.957027088637573 0 0.8792026 0.5390395 prediction 0.914054177275146 Functional Loss - BAX ENSG00000087088 CDS Human protein_coding chr19:49464847 chr19:49464847 nonsynonymous SNV 0.916 2 21 hm5C_associated_SNPs_48832 0 0 1 0 2 BAX chr19:49464789 3'AG 49464789 Downstream 59bp
chr19 49464847 49464847 1 + C T STAD 49464847 + 49464827 49464867 41 GACCGTGACCATCTTTGTGGCGGGAGTGCTCACCGCCTCAC GACCGTGACCATCTTTGTGGTGGGAGTGCTCACCGCCTCAC Direct Loss 0.957027088637573 0 0.8792026 0.5390395 prediction 0.914054177275146 Functional Loss - BAX ENSG00000087088 CDS Human protein_coding chr19:49464847 chr19:49464847 nonsynonymous SNV 0.916 2 21 hm5C_associated_SNPs_48832 0 0 1 0 2 BAX chr19:49464828 3'AG 49464828 Downstream 20bp
chr5 633995 633995 1 + C T CESC 633995 + 633975 634015 41 GCAGAGTGCGAGTGGGACCTCGGCAGGCCTCCCGGGAGCAC GCAGAGTGCGAGTGGGACCTTGGCAGGCCTCCCGGGAGCAC Direct Loss 0.95702570808283 0 0.59633654 0.44651154 prediction 0.914051416165659 Functional Loss - CEP72 ENSG00000112877 CDS Human protein_coding chr5:633995 chr5:633995 synonymous SNV . 0 21 hm5C_associated_SNPs_48833 0 0 1 0 1 CEP72 chr5:634062 5'GT 634062 Upstream 68bp
chr22 25016351 25016351 1 + C T COAD 25016351 + 25016331 25016371 41 GCTATGAGCTGGCACACCAGCGGCATGGGCGGCTGCCCTGG GCTATGAGCTGGCACACCAGTGGCATGGGCGGCTGCCCTGG Direct Loss 0.957015824413312 0 0.8391727 0.3788655 prediction 0.914031648826625 Functional Loss - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25016351 chr22:25016351 nonsynonymous SNV 0.019 3 21 hm5C_associated_SNPs_48835 0 0 0 0 1 GGT1 chr22:25016295 3'AG 25016295 Downstream 57bp
chr11 113857672 113857672 1 + C A UCEC 113857672 + 113857652 113857692 41 CTTGGCTGCGTCACCTGGTTCTGGAGAGAATCGCCTGGCTA CTTGGCTGCGTCACCTGGTTATGGAGAGAATCGCCTGGCTA Direct Loss 0.956927532349521 0 0.6045874 0.49996728 prediction 0.913855064699042 Functional Loss - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113857672 chr11:113857672 nonsynonymous SNV 0.181 4 21 hm5C_associated_SNPs_48842 0 0 0 0 1 HTR3A chr11:113857768 5'GT 113857768 Upstream 97bp
chr17 46628442 46628442 1 + C A PRAD 46628442 + 46628422 46628462 41 CCGCTTGGACGCCGCCGACCCCGGGGGGCTCTTGTCCCCTC CCGCTTGGACGCCGCCGACCACGGGGGGCTCTTGTCCCCTC Direct Loss 0.956927483176346 0 0.9330416 0.9364301 prediction 0.913854966352692 Functional Loss - HOXB3 ENSG00000120093 CDS Human protein_coding chr17:46628442 chr17:46628442 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_48843 0 0 1 0 1 HOXB3 chr17:46628386 3'AG 46628386 Downstream 57bp
chr10 11894170 11894170 1 + C T KIRC 11894170 + 11894150 11894190 41 CCTTCAGCAGAGGCGGCAGCCTGGAGAGTCGAAGCAGCAGC CCTTCAGCAGAGGCGGCAGCTTGGAGAGTCGAAGCAGCAGC Direct Loss 0.956911141266053 0 0.59735334 0.5256868 prediction 0.913822282532105 Functional Loss - PROSER2 ENSG00000148426 CDS Human protein_coding chr10:11894170 chr10:11894170 synonymous SNV . 0 21 hm5C_associated_SNPs_48845 0 0 1 0 1 PROSER2 chr10:11894214 5'GT 11894214 Upstream 45bp
chr11 47260392 47260392 1 + C T UCEC 47260392 + 47260372 47260412 41 GCCAGGAGGAAGCCAGGACACGGAAGTGAGAGACACTAAAG GCCAGGAGGAAGCCAGGACATGGAAGTGAGAGACACTAAAG Direct Loss 0.956891978462007 0 0.8232244 0.35271633 prediction 0.913783956924014 Functional Loss - DDB2 ENSG00000134574 CDS Human protein_coding chr11:47260392 chr11:47260392 nonsynonymous SNV 0.105 2 21 hm5C_associated_SNPs_48848 0 0 1 0 1 DDB2 chr11:47260351 3'AG 47260351 Downstream 42bp
chr21 33678970 33678970 1 + C A UCEC 33678970 + 33678950 33678990 41 GATTCCATCGTGATCGCATTCTGGGTGAGCCTGGCTGCCTT GATTCCATCGTGATCGCATTATGGGTGAGCCTGGCTGCCTT Direct Loss 0.95687664551271 0 0.9099957 0.85469496 prediction 0.91375329102542 Functional Loss - MRAP ENSG00000170262 CDS Human protein_coding chr21:33678970 chr21:33678970 nonsynonymous SNV 0.499 1 21 hm5C_associated_SNPs_48850 0 0 0 0 2 MRAP chr21:33678951 3'AG 33678951 Downstream 20bp
chr21 33678970 33678970 1 + C A UCEC 33678970 + 33678950 33678990 41 GATTCCATCGTGATCGCATTCTGGGTGAGCCTGGCTGCCTT GATTCCATCGTGATCGCATTATGGGTGAGCCTGGCTGCCTT Direct Loss 0.95687664551271 0 0.9099957 0.85469496 prediction 0.91375329102542 Functional Loss - MRAP ENSG00000170262 CDS Human protein_coding chr21:33678970 chr21:33678970 nonsynonymous SNV 0.499 1 21 hm5C_associated_SNPs_48850 0 0 0 0 2 MRAP chr21:33679050 5'GT 33679050 Upstream 81bp
chr1 171761191 171761191 1 + C G rs2232822 171761191 + 171761171 171761211 41 TTGTTGGTGGTAGGCCTGGGCGGGGGCAGCCTCCCCCTCTT TTGTTGGTGGTAGGCCTGGGGGGGGGCAGCCTCCCCCTCTT Direct Loss 0.956861471080915 0 0.93745095 0.9283129 prediction 0.91372294216183 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171761191 chr1:171761191 synonymous SNV . 0 21 hm5C_associated_SNPs_48851 0 0 1 0 1 METTL13 chr1:171761157 3'AG 171761157 Downstream 35bp
chr19 9949194 9949194 1 + C T PAAD 9949194 + 9949174 9949214 41 AGCAGCAGTGGTGGCAAAAACGGGCAGGGGGAGCCTGCCAG AGCAGCAGTGGTGGCAAAAATGGGCAGGGGGAGCCTGCCAG Direct Loss 0.956849249313487 0 0.86725086 0.763929 prediction 0.913698498626974 Functional Loss - PIN1 ENSG00000127445 CDS Human protein_coding chr19:9949194 chr19:9949194 synonymous SNV . 0 21 hm5C_associated_SNPs_48853 0 0 1 0 1 PIN1 chr19:9949112 3'AG 9949112 Downstream 83bp
chr19 12923992 12923992 1 + C T SKCM 12923992 + 12923972 12924012 41 GGCGCACGGCCCAGACCATCCTGGAGAAAGAGGCGGAAGAT GGCGCACGGCCCAGACCATCTTGGAGAAAGAGGCGGAAGAT Direct Loss 0.956838393831019 0 0.7332769 0.86665106 prediction 0.913676787662037 Functional Loss - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12923992 chr19:12923992 synonymous SNV . 0 21 hm5C_associated_SNPs_48856 0 0 1 0 2 RNASEH2A chr19:12923897 3'AG 12923897 Downstream 96bp
chr19 12923992 12923992 1 + C T SKCM 12923992 + 12923972 12924012 41 GGCGCACGGCCCAGACCATCCTGGAGAAAGAGGCGGAAGAT GGCGCACGGCCCAGACCATCTTGGAGAAAGAGGCGGAAGAT Direct Loss 0.956838393831019 0 0.7332769 0.86665106 prediction 0.913676787662037 Functional Loss - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12923992 chr19:12923992 synonymous SNV . 0 21 hm5C_associated_SNPs_48856 0 0 1 0 2 RNASEH2A chr19:12924020 5'GT 12924020 Upstream 29bp
chr11 67379625 67379625 1 + C T SKCM 67379625 + 67379605 67379645 41 AACAAGGTGATGGCACGTTTCGTGAGGGGGGATGCCCGGCC AACAAGGTGATGGCACGTTTTGTGAGGGGGGATGCCCGGCC Direct Loss 0.956835556212302 0 0.90863454 0.71859646 prediction 0.913671112424605 Functional Loss - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67379625 chr11:67379625 synonymous SNV . 0 21 hm5C_associated_SNPs_48857 0 0 1 0 1 NDUFV1 chr11:67379591 3'AG 67379591 Downstream 35bp
chr12 109288102 109288102 1 + C T BRCA 109288102 + 109288082 109288122 41 TATGGGCTGGGGCGCTACAACGAGACCCCCTGCTGCAGCCA TATGGGCTGGGGCGCTACAATGAGACCCCCTGCTGCAGCCA Direct Loss 0.956834860671401 0 0.88252616 0.8390846 prediction 0.913669721342803 Functional Loss - DAO ENSG00000110887 CDS Human protein_coding chr12:109288102 chr12:109288102 stopgain 0.080 1 21 hm5C_associated_SNPs_48858 0 0 0 0 2 DAO chr12:109288039 3'AG 109288039 Downstream 64bp
chr12 109288102 109288102 1 + C T BRCA 109288102 + 109288082 109288122 41 TATGGGCTGGGGCGCTACAACGAGACCCCCTGCTGCAGCCA TATGGGCTGGGGCGCTACAATGAGACCCCCTGCTGCAGCCA Direct Loss 0.956834860671401 0 0.88252616 0.8390846 prediction 0.913669721342803 Functional Loss - DAO ENSG00000110887 CDS Human protein_coding chr12:109288102 chr12:109288102 stopgain 0.080 1 21 hm5C_associated_SNPs_48858 0 0 0 0 2 DAO chr12:109288143 5'GT 109288143 Upstream 42bp
chr1 64102039 64102039 1 + C T OV 64102039 + 64102019 64102059 41 GGCTTTGCACGGAGCATGCCCACGAGTGGTGCTCTGGACCG GGCTTTGCACGGAGCATGCCTACGAGTGGTGCTCTGGACCG Direct Loss 0.956834029235167 0 0.8159325 0.7236986 prediction 0.913668058470334 Functional Loss - PGM1 ENSG00000079739 CDS Human protein_coding chr1:64102039 chr1:64102039 synonymous SNV . 0 21 hm5C_associated_SNPs_48859 0 0 1 0 1 PGM1 chr1:64102059 5'GT 64102059 Upstream 21bp
chr3 51733461 51733461 1 + C T STAD 51733461 + 51733441 51733481 41 ATCCTCGGCTGGAGATCTACCAGGAAGACCAGATCCATTTC ATCCTCGGCTGGAGATCTACTAGGAAGACCAGATCCATTTC Direct Loss 0.956821736279662 0 0.8891429 0.44589815 prediction 0.913643472559325 Functional Loss - TEX264 ENSG00000164081 CDS Human protein_coding chr3:51733461 chr3:51733461 stopgain 0.994 0 21 hm5C_associated_SNPs_48862 0 0 1 0 1 TEX264 chr3:51733422 3'AG 51733422 Downstream 40bp
chr2 3691331 3691331 1 + C A LUAD 3691331 + 3691311 3691351 41 CCACAGCTGTCGCCGGTGTGCGCGAGACGGAGAGCAAGATC CCACAGCTGTCGCCGGTGTGAGCGAGACGGAGAGCAAGATC Direct Loss 0.956808578013933 0 0.8774905 0.89298165 prediction 0.913617156027867 Functional Loss - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3691331 chr2:3691331 nonsynonymous SNV 0.093 4 21 hm5C_associated_SNPs_48864 0 0 0 0 1 COLEC11 chr2:3691317 3'AG 3691317 Downstream 15bp
chr6 30314294 30314294 1 + C A OV 30314294 + 30314274 30314314 41 AATGATCCCGGGCATTTACTCTGGGGAGACAGGCCTGAGGC AATGATCCCGGGCATTTACTATGGGGAGACAGGCCTGAGGC Direct Loss 0.95680468845236 0 0.88767797 0.59655994 prediction 0.913609376904719 Functional Loss - RPP21;TRIM39-RPP21 ENSG00000241370;ENSG00000248167 CDS Human other chr6:30314294 chr6:30314294 synonymous SNV . 0 21 hm5C_associated_SNPs_48865 0 0 1 0 3 RPP21;TRIM39-RPP21 chr6:30314209 3'AG 30314209 Downstream 86bp
chr6 30314294 30314294 1 + C A OV 30314294 + 30314274 30314314 41 AATGATCCCGGGCATTTACTCTGGGGAGACAGGCCTGAGGC AATGATCCCGGGCATTTACTATGGGGAGACAGGCCTGAGGC Direct Loss 0.95680468845236 0 0.88767797 0.59655994 prediction 0.913609376904719 Functional Loss - RPP21;TRIM39-RPP21 ENSG00000241370;ENSG00000248167 CDS Human other chr6:30314294 chr6:30314294 synonymous SNV . 0 21 hm5C_associated_SNPs_48865 0 0 1 0 3 RPP21;TRIM39-RPP21 chr6:30314334 5'GT 30314334 Upstream 41bp
chr6 30314294 30314294 1 + C A OV 30314294 + 30314274 30314314 41 AATGATCCCGGGCATTTACTCTGGGGAGACAGGCCTGAGGC AATGATCCCGGGCATTTACTATGGGGAGACAGGCCTGAGGC Direct Loss 0.95680468845236 0 0.88767797 0.59655994 prediction 0.913609376904719 Functional Loss - RPP21;TRIM39-RPP21 ENSG00000241370;ENSG00000248167 CDS Human protein_coding chr6:30314294 chr6:30314294 synonymous SNV . 0 21 hm5C_associated_SNPs_48865 0 0 1 0 3 RPP21 chr6:30314341 5'GT 30314341 Upstream 48bp
chr15 41105019 41105019 1 + C T UCEC 41105019 + 41104999 41105039 41 CTGAGGCAGCACTTGAGTTGCGGGAGGAGAACACGAGGCAG CTGAGGCAGCACTTGAGTTGTGGGAGGAGAACACGAGGCAG Direct Loss 0.956768126011055 0 0.9169669 0.9005599 prediction 0.91353625202211 Functional Loss - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105019 chr15:41105019 nonsynonymous SNV 0.870 3 21 hm5C_associated_SNPs_48870 0 0 0 0 1 ZFYVE19 chr15:41105100 5'GT 41105100 Upstream 82bp
chr20 45717954 45717954 1 + C A rs866937 45717954 + 45717934 45717974 41 AGGCCGCACCGGGCCTCCGACGGGAAGCTCCGAGGCCGGTC AGGCCGCACCGGGCCTCCGAAGGGAAGCTCCGAGGCCGGTC Direct Loss 0.956767579236474 0 0.8832531 0.81201947 prediction 0.913535158472947 Functional Loss - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45717954 chr20:45717954 nonsynonymous SNV 0.865 1 21 hm5C_associated_SNPs_48871 0 0 0 0 2 EYA2 chr20:45717878 3'AG 45717878 Downstream 77bp
chr20 45717954 45717954 1 + C A rs866937 45717954 + 45717934 45717974 41 AGGCCGCACCGGGCCTCCGACGGGAAGCTCCGAGGCCGGTC AGGCCGCACCGGGCCTCCGAAGGGAAGCTCCGAGGCCGGTC Direct Loss 0.956767579236474 0 0.8832531 0.81201947 prediction 0.913535158472947 Functional Loss - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45717954 chr20:45717954 nonsynonymous SNV 0.865 1 21 hm5C_associated_SNPs_48871 0 0 0 0 2 EYA2 chr20:45718020 5'GT 45718020 Upstream 67bp
chr1 9017275 9017275 1 + C A LUSC 9017275 + 9017255 9017295 41 GCCCAGCAGATGCACTTTCACTGGGGAGGTGCGTCCTCGGA GCCCAGCAGATGCACTTTCAATGGGGAGGTGCGTCCTCGGA Direct Loss 0.956765525793666 0 0.5184872 0.7710752 prediction 0.913531051587332 Functional Loss - CA6 ENSG00000131686 CDS Human protein_coding chr1:9017275 chr1:9017275 nonsynonymous SNV 0.622 4 21 hm5C_associated_SNPs_48872 0 0 0 0 2 CA6 chr1:9017196 3'AG 9017196 Downstream 80bp
chr1 9017275 9017275 1 + C A LUSC 9017275 + 9017255 9017295 41 GCCCAGCAGATGCACTTTCACTGGGGAGGTGCGTCCTCGGA GCCCAGCAGATGCACTTTCAATGGGGAGGTGCGTCCTCGGA Direct Loss 0.956765525793666 0 0.5184872 0.7710752 prediction 0.913531051587332 Functional Loss - CA6 ENSG00000131686 CDS Human protein_coding chr1:9017275 chr1:9017275 nonsynonymous SNV 0.622 4 21 hm5C_associated_SNPs_48872 0 0 0 0 2 CA6 chr1:9017344 5'GT 9017344 Upstream 70bp
chr1 32502610 32502610 1 + C T UCEC 32502610 + 32502590 32502630 41 GTGGGGTGCCAGTGAGAGGCCGGGGAGCTGCACCTCCTCCA GTGGGGTGCCAGTGAGAGGCTGGGGAGCTGCACCTCCTCCA Direct Loss 0.956677568381281 0 0.94082344 0.9334714 prediction 0.913355136762563 Functional Loss - KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502610 chr1:32502610 nonsynonymous SNV 0.954 1 21 hm5C_associated_SNPs_48879 0 0 1 0 2 KHDRBS1 chr1:32502511 3'AG 32502511 Downstream 100bp
chr1 32502610 32502610 1 + C T UCEC 32502610 + 32502590 32502630 41 GTGGGGTGCCAGTGAGAGGCCGGGGAGCTGCACCTCCTCCA GTGGGGTGCCAGTGAGAGGCTGGGGAGCTGCACCTCCTCCA Direct Loss 0.956677568381281 0 0.94082344 0.9334714 prediction 0.913355136762563 Functional Loss - KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502610 chr1:32502610 nonsynonymous SNV 0.954 1 21 hm5C_associated_SNPs_48879 0 0 1 0 2 KHDRBS1 chr1:32502644 5'GT 32502644 Upstream 35bp
chr20 36965602 36965602 1 + C T rs376454204 36965602 + 36965582 36965622 41 AATGAAGGCACCAGGGGTGCCGGGGGCTGTCAGCCACACCT AATGAAGGCACCAGGGGTGCTGGGGGCTGTCAGCCACACCT Direct Loss 0.956669230989982 0 0.90513706 0.89541644 prediction 0.913338461979964 Functional Loss - BPI ENSG00000101425 UTR3 Human protein_coding chr20:36965602 chr20:36965602 . . 0 21 hm5C_associated_SNPs_48881 0 0 0 0 1 BPI chr20:36965548 3'AG 36965548 Downstream 55bp
chr19 17973794 17973794 1 + C G rs141247185 17973794 + 17973774 17973814 41 ATCATGAAGGTGGAGGAGATCGCGGCCAGCAAGTGCCGCCG ATCATGAAGGTGGAGGAGATGGCGGCCAGCAAGTGCCGCCG Direct Loss 0.956665339365865 0 0.90580285 0.636046 prediction 0.91333067873173 Functional Loss - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17973794 chr19:17973794 nonsynonymous SNV 0.942 2 21 hm5C_associated_SNPs_48882 0 0 0 0 2 RPL18A chr19:17973727 3'AG 17973727 Downstream 68bp
chr19 17973794 17973794 1 + C G rs141247185 17973794 + 17973774 17973814 41 ATCATGAAGGTGGAGGAGATCGCGGCCAGCAAGTGCCGCCG ATCATGAAGGTGGAGGAGATGGCGGCCAGCAAGTGCCGCCG Direct Loss 0.956665339365865 0 0.90580285 0.636046 prediction 0.91333067873173 Functional Loss - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17973794 chr19:17973794 nonsynonymous SNV 0.942 2 21 hm5C_associated_SNPs_48882 0 0 0 0 2 RPL18A chr19:17973836 5'GT 17973836 Upstream 43bp
chr7 134925343 134925343 1 + C T LUAD 134925343 + 134925323 134925363 41 CCCAGCTGCCAGCACAGCTGCAGGAGCTTGAGCATCGGGTG CCCAGCTGCCAGCACAGCTGTAGGAGCTTGAGCATCGGGTG Direct Loss 0.95663702047099 0 0.8906667 0.797315 prediction 0.913274040941979 Functional Loss - STRA8 ENSG00000146857 CDS Human protein_coding chr7:134925343 chr7:134925343 stopgain 0.169 0 21 hm5C_associated_SNPs_48885 0 0 0 0 1 STRA8 chr7:134925271 3'AG 134925271 Downstream 73bp
chr3 5229991 5229991 1 + C T rs201295523 5229991 + 5229971 5230011 41 CGCGGCCGTGGGCCCGACCGCGGGGACCCGTGAGTAGCCCC CGCGGCCGTGGGCCCGACCGTGGGGACCCGTGAGTAGCCCC Direct Loss 0.956553999316456 0 0.90144837 0.8349043 prediction 0.913107998632912 Functional Loss - EDEM1 ENSG00000134109 CDS Human protein_coding chr3:5229991 chr3:5229991 synonymous SNV . 0 21 hm5C_associated_SNPs_48893 0 0 1 0 1 EDEM1 chr3:5229999 5'GT 5229999 Upstream 9bp
chr19 7832468 7832468 1 + C T SKCM 7832468 + 7832448 7832488 41 TGGGACTTTCAGACCTAAATCAGGAAGGCACGTGGCAATGG TGGGACTTTCAGACCTAAATTAGGAAGGCACGTGGCAATGG Direct Loss 0.956530354688514 0 0.8867755 0.4749591 prediction 0.913060709377029 Functional Loss - CLEC4M ENSG00000104938 CDS Human protein_coding chr19:7832468 chr19:7832468 stopgain 0.004 0 21 hm5C_associated_SNPs_48898 0 0 0 0 2 CLEC4M chr19:7832402 3'AG 7832402 Downstream 67bp
chr19 7832468 7832468 1 + C T SKCM 7832468 + 7832448 7832488 41 TGGGACTTTCAGACCTAAATCAGGAAGGCACGTGGCAATGG TGGGACTTTCAGACCTAAATTAGGAAGGCACGTGGCAATGG Direct Loss 0.956530354688514 0 0.8867755 0.4749591 prediction 0.913060709377029 Functional Loss - CLEC4M ENSG00000104938 CDS Human protein_coding chr19:7832468 chr19:7832468 stopgain 0.004 0 21 hm5C_associated_SNPs_48898 0 0 0 0 2 CLEC4M chr19:7832514 5'GT 7832514 Upstream 47bp
chr19 49983704 49983704 1 + C T rs368101323 49983704 + 49983684 49983724 41 GCCTGCACTGGCAGAGGACGCGGCGGAGGACACCCCGCCCT GCCTGCACTGGCAGAGGACGTGGCGGAGGACACCCCGCCCT Direct Loss 0.956527122903945 0 0.92287064 0.9155771 prediction 0.91305424580789 Functional Loss - FLT3LG ENSG00000090554 CDS Human protein_coding chr19:49983704 chr19:49983704 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48899 0 0 1 0 1 FLT3LG chr19:49983733 5'GT 49983733 Upstream 30bp
chrX 152036194 152036194 1 + C T BRCA 152036194 + 152036174 152036214 41 TGGCGGCAGAGCAGCTCTCCCGAGACTCGACACTGGGTGGG TGGCGGCAGAGCAGCTCTCCTGAGACTCGACACTGGGTGGG Direct Loss 0.956521449878214 0 0.834633 0.7038379 prediction 0.913042899756428 Functional Loss - NSDHL ENSG00000147383 CDS Human protein_coding chrX:152036194 chrX:152036194 stopgain 0.243 0 21 hm5C_associated_SNPs_48901 0 0 1 0 2 NSDHL chrX:152036115 3'AG 152036115 Downstream 80bp
chrX 152036194 152036194 1 + C T BRCA 152036194 + 152036174 152036214 41 TGGCGGCAGAGCAGCTCTCCCGAGACTCGACACTGGGTGGG TGGCGGCAGAGCAGCTCTCCTGAGACTCGACACTGGGTGGG Direct Loss 0.956521449878214 0 0.834633 0.7038379 prediction 0.913042899756428 Functional Loss - NSDHL ENSG00000147383 CDS Human protein_coding chrX:152036194 chrX:152036194 stopgain 0.243 0 21 hm5C_associated_SNPs_48901 0 0 1 0 2 NSDHL chrX:152036217 5'GT 152036217 Upstream 24bp
chr20 31017811 31017811 1 + C T BLCA 31017811 + 31017791 31017831 41 GTGGCCAGGCCGAGGTCACCCAGGACCCTGCCCCGCTCCTG GTGGCCAGGCCGAGGTCACCTAGGACCCTGCCCCGCTCCTG Direct Loss 0.956495262081284 0 0.88383317 0.8284213 prediction 0.912990524162567 Functional Loss - ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31017811 chr20:31017811 stopgain 0.992 0 21 hm5C_associated_SNPs_48904 0 0 1 0 1 ASXL1 chr20:31017856 5'GT 31017856 Upstream 46bp
chr9 130965893 130965893 1 + C G LUAD 130965893 + 130965873 130965913 41 GCCGGCAAGAGCTCGGTGCTCGAGAATTTCGTAGGCAGGTA GCCGGCAAGAGCTCGGTGCTGGAGAATTTCGTAGGCAGGTA Direct Loss 0.956489584886111 0 0.86215866 0.87283826 prediction 0.912979169772223 Functional Loss - DNM1 ENSG00000106976 CDS Human protein_coding chr9:130965893 chr9:130965893 synonymous SNV . 0 21 hm5C_associated_SNPs_48906 0 0 1 0 1 DNM1 chr9:130965910 5'GT 130965910 Upstream 18bp
chr15 41523608 41523608 1 + C T PRAD 41523608 + 41523588 41523628 41 CTCGGGCCTCCACGTTACTGCGGGACGAAGAGCTCGAGGAG CTCGGGCCTCCACGTTACTGTGGGACGAAGAGCTCGAGGAG Direct Loss 0.956474725851944 0 0.89975286 0.8823471 prediction 0.912949451703888 Functional Loss - CHP1 ENSG00000187446 CDS Human protein_coding chr15:41523608 chr15:41523608 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_48907 0 0 1 0 1 CHP1 chr15:41523647 5'GT 41523647 Upstream 40bp
chrX 2951149 2951149 1 + C A STAD 2951149 + 2951129 2951169 41 GAGTGGAATATGTTCATGTTCGGGGGATGTAACCTACCACG GAGTGGAATATGTTCATGTTAGGGGGATGTAACCTACCACG Direct Loss 0.956465898231392 0 0.9500754 0.92198867 prediction 0.912931796462783 Functional Loss - ARSH ENSG00000205667 CDS Human protein_coding chrX:2951149 chrX:2951149 stopgain 0.003 0 21 hm5C_associated_SNPs_48909 0 0 0 0 1 ARSH chrX:2951059 3'AG 2951059 Downstream 91bp
chr11 67376950 67376950 1 + C T rs199702939 67376950 + 67376930 67376970 41 TATCTGGTGGTGAACGCAGACGAGGGGGAGCCGGGCACCTG TATCTGGTGGTGAACGCAGATGAGGGGGAGCCGGGCACCTG Direct Loss 0.956438039497226 0 0.8799412 0.83972454 prediction 0.912876078994452 Functional Loss - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67376950 chr11:67376950 synonymous SNV . 0 21 hm5C_associated_SNPs_48910 1 0 1 0 1 NDUFV1 chr11:67376923 3'AG 67376923 Downstream 28bp
chr20 4680289 4680289 1 + C T COAD 4680289 + 4680269 4680309 41 AGCAGGCCCATCATACATTTCGGCAGTGACTATGAGGACCG AGCAGGCCCATCATACATTTTGGCAGTGACTATGAGGACCG Direct Loss 0.956392261630081 0 0.2364712 0.18326673 prediction 0.912784523260162 Functional Loss - PRNP ENSG00000171867 CDS Human protein_coding chr20:4680289 chr20:4680289 synonymous SNV . 0 21 hm5C_associated_SNPs_48913 0 0 1 0 1 PRNP chr20:4680216 3'AG 4680216 Downstream 74bp
chr8 38110280 38110280 1 + C T LIHC 38110280 + 38110260 38110300 41 GATTGAACCAATGGTGGTCCCAGGAGTGGAATTTGAGCCAA GATTGAACCAATGGTGGTCCTAGGAGTGGAATTTGAGCCAA Direct Loss 0.95634218816937 0 0.89144003 0.8714532 prediction 0.91268437633874 Functional Loss - DDHD2 ENSG00000085788 CDS Human protein_coding chr8:38110280 chr8:38110280 nonsynonymous SNV 0.936 3 21 hm5C_associated_SNPs_48918 0 0 1 0 2 DDHD2 chr8:38110240 3'AG 38110240 Downstream 41bp
chr8 38110280 38110280 1 + C T LIHC 38110280 + 38110260 38110300 41 GATTGAACCAATGGTGGTCCCAGGAGTGGAATTTGAGCCAA GATTGAACCAATGGTGGTCCTAGGAGTGGAATTTGAGCCAA Direct Loss 0.95634218816937 0 0.89144003 0.8714532 prediction 0.91268437633874 Functional Loss - DDHD2 ENSG00000085788 CDS Human protein_coding chr8:38110280 chr8:38110280 nonsynonymous SNV 0.936 3 21 hm5C_associated_SNPs_48918 0 0 1 0 2 DDHD2 chr8:38110342 5'GT 38110342 Upstream 63bp
chr13 50571301 50571301 1 + C G rs28411370 50571301 + 50571281 50571321 41 ACCCGCCGCCCGGCTCCTCTCGGGAAAGCGGGGTGGTCCTC ACCCGCCGCCCGGCTCCTCTGGGGAAAGCGGGGTGGTCCTC Direct Loss 0.956334076751363 0 0.94218785 0.8740516 prediction 0.912668153502725 Functional Loss - DLEU2 ENSG00000204977 UTR5 Human protein_coding chr13:50571301 chr13:50571301 . . 0 21 hm5C_associated_SNPs_48919 0 0 1 0 1 DLEU2 chr13:50571352 5'GT 50571352 Upstream 52bp
chrX 48336460 48336460 1 + C T GBM 48336460 + 48336440 48336480 41 GACGGACGTCAAAGGACAAGCGGGATGTCTACTACCGCCTG GACGGACGTCAAAGGACAAGTGGGATGTCTACTACCGCCTG Direct Loss 0.95630702948708 0 0.90979826 0.8714662 prediction 0.91261405897416 Functional Loss - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48336460 chrX:48336460 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_48923 0 0 1 0 1 FTSJ1 chrX:48336556 5'GT 48336556 Upstream 97bp
chr17 78395694 78395694 1 + C A rs35171431 78395694 + 78395674 78395714 41 TGTCGGGCTTCCTGGCCTTCCGAGAGGTGCCCTTCTTGCTG TGTCGGGCTTCCTGGCCTTCAGAGAGGTGCCCTTCTTGCTG Direct Loss 0.956305310018367 0 0.91320443 0.89991295 prediction 0.912610620036733 Functional Loss - ENDOV ENSG00000173818 CDS Human protein_coding chr17:78395694 chr17:78395694 synonymous SNV . 0 21 hm5C_associated_SNPs_48924 0 0 0 0 1 ENDOV chr17:78395628 3'AG 78395628 Downstream 67bp
chr5 115177767 115177767 1 + C T LGG 115177767 + 115177747 115177787 41 ATCCTAATCTTCAACAACCACGGGAAGCCGCGGCTCTCCAA ATCCTAATCTTCAACAACCATGGGAAGCCGCGGCTCTCCAA Direct Loss 0.956295989576071 0 0.8335494 0.5662267 prediction 0.912591979152142 Functional Loss - AP3S1 ENSG00000177879 CDS Human protein_coding chr5:115177767 chr5:115177767 synonymous SNV . 0 21 hm5C_associated_SNPs_48925 0 0 1 0 1 AP3S1 chr5:115177803 5'GT 115177803 Upstream 37bp
chr19 17898527 17898527 1 + C T LIHC 17898527 + 17898507 17898547 41 TGCCAGCTGGGAGCCGCTCTCAGGGCCCAGCACACCCAGCC TGCCAGCTGGGAGCCGCTCTTAGGGCCCAGCACACCCAGCC Direct Loss 0.956227499996172 0 0.96257704 0.93958986 prediction 0.912454999992343 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17898527 chr19:17898527 nonsynonymous SNV 0.010 1 21 hm5C_associated_SNPs_48932 0 0 0 0 1 FCHO1 chr19:17898491 3'AG 17898491 Downstream 37bp
chr20 4680058 4680058 1 + C G LUAD 4680058 + 4680038 4680078 41 GGGCAGCCTCATGGTGGTGGCTGGGGGCAGCCTCATGGTGG GGGCAGCCTCATGGTGGTGGGTGGGGGCAGCCTCATGGTGG Direct Loss 0.95622453281474 0 0.8786253 0.87628746 prediction 0.91244906562948 Functional Loss - PRNP ENSG00000171867 CDS Human protein_coding chr20:4680058 chr20:4680058 synonymous SNV . 0 21 hm5C_associated_SNPs_48933 0 0 1 0 1 PRNP chr20:4680125 5'GT 4680125 Upstream 68bp
chr17 1944907 1944907 1 + C A LUSC 1944907 + 1944887 1944927 41 ACGCCCCGGGCCGGCCCGCGCGGGGGAAGGTAGGCGGGGGC ACGCCCCGGGCCGGCCCGCGAGGGGGAAGGTAGGCGGGGGC Direct Loss 0.956191444549748 0 0.9377328 0.92077136 prediction 0.912382889099496 Functional Loss - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1944907 chr17:1944907 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_48936 0 0 1 0 1 DPH1 chr17:1944915 5'GT 1944915 Upstream 9bp
chr12 50480064 50480064 1 + C A SARC 50480064 + 50480044 50480084 41 AGTCAGGGATGGATCAGTCCCGCAAGAGACCTGCCCCTCAG AGTCAGGGATGGATCAGTCCAGCAAGAGACCTGCCCCTCAG Direct Loss 0.956189168212024 0 0.4241529 0.36383972 prediction 0.912378336424048 Functional Loss - SMARCD1 ENSG00000066117 CDS Human protein_coding chr12:50480064 chr12:50480064 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_48938 0 0 1 0 1 SMARCD1 chr12:50480131 5'GT 50480131 Upstream 68bp
chr5 179126070 179126070 1 + C T rs185536392 179126070 + 179126050 179126090 41 GGTGTGCGGGCGGGAAGGGGCACGGGCACCCCCGCGGTCCC GGTGTGCGGGCGGGAAGGGGTACGGGCACCCCCGCGGTCCC Direct Loss 0.956184552934784 0 0.88651615 0.85463035 prediction 0.912369105869568 Functional Loss - CANX ENSG00000127022 CDS Human protein_coding chr5:179126070 chr5:179126070 unknown . 0 21 hm5C_associated_SNPs_48939 0 0 1 0 1 CANX chr5:179126103 5'GT 179126103 Upstream 34bp
chr22 37273767 37273767 1 + C T UCEC 37273767 + 37273747 37273787 41 AGGACGTAGCGCTCATGGTGCGGCAGGCTCGTGGCCTCCCC AGGACGTAGCGCTCATGGTGTGGCAGGCTCGTGGCCTCCCC Direct Loss 0.95618416292269 0 0.82225573 0.5714196 prediction 0.912368325845381 Functional Loss - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37273767 chr22:37273767 nonsynonymous SNV 0.063 2 21 hm5C_associated_SNPs_48940 0 0 0 0 1 NCF4 chr22:37273670 3'AG 37273670 Downstream 98bp
chrX 118708894 118708894 1 + C T UCEC 118708894 + 118708874 118708914 41 GATCCTCCAGCCGGAGTCAGCGGGGCTCCGTCCGAGAACAA GATCCTCCAGCCGGAGTCAGTGGGGCTCCGTCCGAGAACAA Direct Loss 0.956173214688604 0 0.92455745 0.89181685 prediction 0.912346429377209 Functional Loss - UBE2A ENSG00000077721 CDS Human protein_coding chrX:118708894 chrX:118708894 synonymous SNV . 0 21 hm5C_associated_SNPs_48942 0 0 1 0 2 UBE2A chrX:118708864 3'AG 118708864 Downstream 31bp
chrX 118708894 118708894 1 + C T UCEC 118708894 + 118708874 118708914 41 GATCCTCCAGCCGGAGTCAGCGGGGCTCCGTCCGAGAACAA GATCCTCCAGCCGGAGTCAGTGGGGCTCCGTCCGAGAACAA Direct Loss 0.956173214688604 0 0.92455745 0.89181685 prediction 0.912346429377209 Functional Loss - UBE2A ENSG00000077721 CDS Human protein_coding chrX:118708894 chrX:118708894 synonymous SNV . 0 21 hm5C_associated_SNPs_48942 0 0 1 0 2 UBE2A chrX:118708944 5'GT 118708944 Upstream 51bp
chr2 113482994 113482994 1 + C T UCEC 113482994 + 113482974 113483014 41 TGTGCGAGCTGCTTGGGGTTCGGGGGATGGACATCCTGTAC TGTGCGAGCTGCTTGGGGTTTGGGGGATGGACATCCTGTAC Direct Loss 0.956170205838784 0 0.9336442 0.9134178 prediction 0.912340411677568 Functional Loss - NT5DC4 ENSG00000144130 CDS Human protein_coding chr2:113482994 chr2:113482994 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_48943 0 0 0 0 1 NT5DC4 chr2:113482959 3'AG 113482959 Downstream 36bp
chr5 176306351 176306351 1 + C T rs79316355 176306351 + 176306331 176306371 41 GCTGGCTCTGGAGAGTGAAGCGGGGGTCCCAGCCCTGGTGG GCTGGCTCTGGAGAGTGAAGTGGGGGTCCCAGCCCTGGTGG Direct Loss 0.956164602347801 0 0.9682635 0.9511562 prediction 0.912329204695602 Functional Loss - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176306351 chr5:176306351 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_48945 0 0 0 0 1 UNC5A chr5:176306311 3'AG 176306311 Downstream 41bp
chr20 43243338 43243338 1 + C T STAD 43243338 + 43243318 43243358 41 GACATGGGCGAGCTGGCACTCGAGGGGGCAGGTTAGAGCCA GACATGGGCGAGCTGGCACTTGAGGGGGCAGGTTAGAGCCA Direct Loss 0.956144751862484 0 0.9333665 0.9105489 prediction 0.912289503724969 Functional Loss - PKIG ENSG00000168734 CDS Human protein_coding chr20:43243338 chr20:43243338 synonymous SNV . 0 21 hm5C_associated_SNPs_48948 0 0 1 0 1 PKIG chr20:43243348 5'GT 43243348 Upstream 11bp
chr19 41626322 41626322 1 + C T BLCA 41626322 + 41626302 41626342 41 ATCCAGATTCTACGGAATTTCGGGATGGGGAAGAGAAGCAT ATCCAGATTCTACGGAATTTTGGGATGGGGAAGAGAAGCAT Direct Loss 0.956087982994345 0 0.91383183 0.90014935 prediction 0.91217596598869 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41626322 chr19:41626322 synonymous SNV . 0 21 hm5C_associated_SNPs_48952 0 0 0 0 2 CYP2F1 chr19:41626252 3'AG 41626252 Downstream 71bp
chr19 41626322 41626322 1 + C T BLCA 41626322 + 41626302 41626342 41 ATCCAGATTCTACGGAATTTCGGGATGGGGAAGAGAAGCAT ATCCAGATTCTACGGAATTTTGGGATGGGGAAGAGAAGCAT Direct Loss 0.956087982994345 0 0.91383183 0.90014935 prediction 0.91217596598869 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41626322 chr19:41626322 synonymous SNV . 0 21 hm5C_associated_SNPs_48952 0 0 0 0 2 CYP2F1 chr19:41626401 5'GT 41626401 Upstream 80bp
chr19 53989969 53989969 1 + C T UCEC 53989969 + 53989949 53989989 41 CCTGCTCAGAGGACTCTATACAGGGACGTGATGCTGGAGAA CCTGCTCAGAGGACTCTATATAGGGACGTGATGCTGGAGAA Direct Loss 0.956071104773278 0 0.93609375 0.66554534 prediction 0.912142209546555 Functional Loss - ZNF813 ENSG00000198346 CDS Human protein_coding chr19:53989969 chr19:53989969 synonymous SNV . 0 21 hm5C_associated_SNPs_48954 0 0 0 1 1 ZNF813 chr19:53990012 5'GT 53990012 Upstream 44bp
chr15 74180059 74180059 1 + C T UCEC 74180059 + 74180039 74180079 41 GTGCTGCAGGAAAGCATGGGCGGGGATGACATCCTCCTGGT GTGCTGCAGGAAAGCATGGGTGGGGATGACATCCTCCTGGT Direct Loss 0.956049859817854 0 0.9201305 0.89741564 prediction 0.912099719635708 Functional Loss - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74180059 chr15:74180059 synonymous SNV . 0 21 hm5C_associated_SNPs_48956 0 0 0 0 2 TBC1D21 chr15:74179961 3'AG 74179961 Downstream 99bp
chr15 74180059 74180059 1 + C T UCEC 74180059 + 74180039 74180079 41 GTGCTGCAGGAAAGCATGGGCGGGGATGACATCCTCCTGGT GTGCTGCAGGAAAGCATGGGTGGGGATGACATCCTCCTGGT Direct Loss 0.956049859817854 0 0.9201305 0.89741564 prediction 0.912099719635708 Functional Loss - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74180059 chr15:74180059 synonymous SNV . 0 21 hm5C_associated_SNPs_48956 0 0 0 0 2 TBC1D21 chr15:74180077 5'GT 74180077 Upstream 19bp
chr19 34262922 34262922 1 + C A rs149660944 34262922 + 34262902 34262942 41 AACCCACAGAGAGGGTCACTCGGGACTTATCCAGTGGGGCC AACCCACAGAGAGGGTCACTAGGGACTTATCCAGTGGGGCC Direct Loss 0.956048014375203 0 0.9432882 0.91655153 prediction 0.912096028750407 Functional Loss - CHST8 ENSG00000124302 CDS Human protein_coding chr19:34262922 chr19:34262922 synonymous SNV . 0 21 hm5C_associated_SNPs_48957 0 0 1 0 1 CHST8 chr19:34262862 3'AG 34262862 Downstream 61bp
chr5 3596419 3596419 1 + C T BLCA 3596419 + 3596399 3596439 41 GCTGGGCATGTACGCGGCGGCGGGGCCGTACGCGGGCGCGC GCTGGGCATGTACGCGGCGGTGGGGCCGTACGCGGGCGCGC Direct Loss 0.956033182417577 0 0.90036553 0.7334255 prediction 0.912066364835154 Functional Loss - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3596419 chr5:3596419 nonsynonymous SNV 0.988 1 21 hm5C_associated_SNPs_48959 0 0 0 0 1 IRX1 chr5:3596495 5'GT 3596495 Upstream 77bp
chr11 67352180 67352180 1 + C T STAD 67352180 + 67352160 67352200 41 ACGGGCAGCTCCCCAAGTTCCAGGACGGAGACCTCACCCTG ACGGGCAGCTCCCCAAGTTCTAGGACGGAGACCTCACCCTG Direct Loss 0.956027453058788 0 0.7689973 0.7646353 prediction 0.912054906117575 Functional Loss - GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67352180 chr11:67352180 stopgain 0.997 0 21 hm5C_associated_SNPs_48961 0 0 1 0 2 GSTP1 chr11:67352156 3'AG 67352156 Downstream 25bp
chr11 67352180 67352180 1 + C T STAD 67352180 + 67352160 67352200 41 ACGGGCAGCTCCCCAAGTTCCAGGACGGAGACCTCACCCTG ACGGGCAGCTCCCCAAGTTCTAGGACGGAGACCTCACCCTG Direct Loss 0.956027453058788 0 0.7689973 0.7646353 prediction 0.912054906117575 Functional Loss - GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67352180 chr11:67352180 stopgain 0.997 0 21 hm5C_associated_SNPs_48961 0 0 1 0 2 GSTP1 chr11:67352243 5'GT 67352243 Upstream 64bp
chr12 52306960 52306960 1 + C T COAD 52306960 + 52306940 52306980 41 ATTGCAAGGGGCCTACCTGCCGGGGGGCCTGGTGCACAGTA ATTGCAAGGGGCCTACCTGCTGGGGGGCCTGGTGCACAGTA Direct Loss 0.956020188537178 0 0.93224514 0.89676756 prediction 0.912040377074355 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52306960 chr12:52306960 nonsynonymous SNV 0.580 1 21 hm5C_associated_SNPs_48962 0 0 0 0 1 ACVRL1 chr12:52306883 3'AG 52306883 Downstream 78bp
chr18 641413 641413 1 + C A UCEC 641413 + 641393 641433 41 ATCAGCAGTATGGCCAGATTCTCCAGATGACCCGGAAGCAC ATCAGCAGTATGGCCAGATTATCCAGATGACCCGGAAGCAC Direct Loss 0.956005701747106 0 0.9378384 0.18135479 prediction 0.912011403494213 Functional Loss - CLUL1 ENSG00000079101 CDS Human protein_coding chr18:641413 chr18:641413 nonsynonymous SNV 0.574 1 21 hm5C_associated_SNPs_48963 0 0 0 0 1 CLUL1 chr18:641327 3'AG 641327 Downstream 87bp
chr5 3596411 3596411 1 + C T STAD 3596411 + 3596391 3596431 41 ACCTCGGTGCTGGGCATGTACGCGGCGGCGGGGCCGTACGC ACCTCGGTGCTGGGCATGTATGCGGCGGCGGGGCCGTACGC Direct Loss 0.956003330888295 0 0.91297054 0.9083725 prediction 0.91200666177659 Functional Loss - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3596411 chr5:3596411 synonymous SNV . 0 21 hm5C_associated_SNPs_48965 0 0 0 0 1 IRX1 chr5:3596495 5'GT 3596495 Upstream 85bp
chr6 43267740 43267740 1 + C T STAD 43267740 + 43267720 43267760 41 CACTGGTTGGGTACCTGATACGGGACTGGCGATGGCTTCTG CACTGGTTGGGTACCTGATATGGGACTGGCGATGGCTTCTG Direct Loss 0.955991233358183 0 0.8766626 0.59697485 prediction 0.911982466716365 Functional Loss - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43267740 chr6:43267740 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_48967 0 0 0 0 1 SLC22A7 chr6:43267804 5'GT 43267804 Upstream 65bp
chr11 45949534 45949534 1 + C T rs939105 45949534 + 45949514 45949554 41 GCACTGGTGGTGCCGGCATTCGAGACCCTGCGCTACCGCTT GCACTGGTGGTGCCGGCATTTGAGACCCTGCGCTACCGCTT Direct Loss 0.955949897640125 0 0.91229033 0.6948677 prediction 0.911899795280249 Functional Loss - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45949534 chr11:45949534 synonymous SNV . 0 21 hm5C_associated_SNPs_48973 0 1 0 0 2 LARGE2 chr11:45949471 3'AG 45949471 Downstream 64bp
chr11 45949534 45949534 1 + C T rs939105 45949534 + 45949514 45949554 41 GCACTGGTGGTGCCGGCATTCGAGACCCTGCGCTACCGCTT GCACTGGTGGTGCCGGCATTTGAGACCCTGCGCTACCGCTT Direct Loss 0.955949897640125 0 0.91229033 0.6948677 prediction 0.911899795280249 Functional Loss - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45949534 chr11:45949534 synonymous SNV . 0 21 hm5C_associated_SNPs_48973 0 1 0 0 2 LARGE2 chr11:45949620 5'GT 45949620 Upstream 87bp
chr3 39433446 39433446 1 + C T COAD 39433446 + 39433426 39433466 41 GCCTGACAGCAACTCTCCTTCGAGATGCGCCCTTCTCAGGA GCCTGACAGCAACTCTCCTTTGAGATGCGCCCTTCTCAGGA Direct Loss 0.955940774331834 0 0.9440303 0.6868368 prediction 0.911881548663668 Functional Loss - SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39433446 chr3:39433446 stopgain 0.985 1 21 hm5C_associated_SNPs_48974 0 0 1 0 1 SLC25A38 chr3:39433512 5'GT 39433512 Upstream 67bp
chr19 39760411 39760411 1 + C T UCEC 39760411 + 39760391 39760431 41 CCACGGCAGGGCCCAGGACCCGGGGCCGCCTCCACCATTGG CCACGGCAGGGCCCAGGACCTGGGGCCGCCTCCACCATTGG Direct Loss 0.955940093965079 0 0.94134367 0.9231399 prediction 0.911880187930158 Functional Loss - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39760411 chr19:39760411 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_48975 0 0 0 0 2 IFNL2 chr19:39760378 3'AG 39760378 Downstream 34bp
chr19 39760411 39760411 1 + C T UCEC 39760411 + 39760391 39760431 41 CCACGGCAGGGCCCAGGACCCGGGGCCGCCTCCACCATTGG CCACGGCAGGGCCCAGGACCTGGGGCCGCCTCCACCATTGG Direct Loss 0.955940093965079 0 0.94134367 0.9231399 prediction 0.911880187930158 Functional Loss - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39760411 chr19:39760411 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_48975 0 0 0 0 2 IFNL2 chr19:39760461 5'GT 39760461 Upstream 51bp
chr1 29069012 29069012 1 + C T STAD 29069012 + 29068992 29069032 41 GGGTGAAGCTGCTTGGTCTACGGGGGGTGACACAGCCATGC GGGTGAAGCTGCTTGGTCTATGGGGGGTGACACAGCCATGC Direct Loss 0.955939816298306 0 0.94872105 0.94175315 prediction 0.911879632596613 Functional Loss - YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29069012 chr1:29069012 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_48976 0 0 1 0 1 YTHDF2 chr1:29068915 3'AG 29068915 Downstream 98bp
chr17 40091945 40091945 1 + C A BRCA 40091945 + 40091925 40091965 41 GCTACAAGCTGAGGCCTGATCGGGAATTCAGAGTTGGCATT GCTACAAGCTGAGGCCTGATAGGGAATTCAGAGTTGGCATT Direct Loss 0.955934980270539 0 0.92381746 0.54571176 prediction 0.911869960541078 Functional Loss - TTC25 ENSG00000204815 ncRNA_exonic Human protein_coding chr17:40091945 chr17:40091945 . . 0 21 hm5C_associated_SNPs_48978 0 0 0 0 2 TTC25 chr17:40091852 3'AG 40091852 Downstream 94bp
chr17 40091945 40091945 1 + C A BRCA 40091945 + 40091925 40091965 41 GCTACAAGCTGAGGCCTGATCGGGAATTCAGAGTTGGCATT GCTACAAGCTGAGGCCTGATAGGGAATTCAGAGTTGGCATT Direct Loss 0.955934980270539 0 0.92381746 0.54571176 prediction 0.911869960541078 Functional Loss - TTC25 ENSG00000204815 ncRNA_exonic Human protein_coding chr17:40091945 chr17:40091945 . . 0 21 hm5C_associated_SNPs_48978 0 0 0 0 2 TTC25 chr17:40092002 5'GT 40092002 Upstream 58bp
chr11 309045 309045 1 + C T LUAD 309045 + 309025 309065 41 AAGATGGTTGGCGACGTGACCGGGGCCCAGGCCTATGCCTC AAGATGGTTGGCGACGTGACTGGGGCCCAGGCCTATGCCTC Direct Loss 0.955912402941479 0 0.93784183 0.9045533 prediction 0.911824805882957 Functional Loss - IFITM2 ENSG00000185201 CDS Human protein_coding chr11:309045 chr11:309045 synonymous SNV . 0 21 hm5C_associated_SNPs_48980 0 0 0 0 1 IFITM2 chr11:309013 3'AG 309013 Downstream 33bp
chr16 31342551 31342551 1 + C T UCEC 31342551 + 31342531 31342571 41 CTCATCGTGGGCAGCTCTGTCGGGGGACTGCTGCTCCTGGC CTCATCGTGGGCAGCTCTGTTGGGGGACTGCTGCTCCTGGC Direct Loss 0.955909675117572 0 0.957783 0.9300903 prediction 0.911819350235144 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31342551 chr16:31342551 synonymous SNV . 0 21 hm5C_associated_SNPs_48981 0 0 0 0 2 ITGAM chr16:31342486 3'AG 31342486 Downstream 66bp
chr16 31342551 31342551 1 + C T UCEC 31342551 + 31342531 31342571 41 CTCATCGTGGGCAGCTCTGTCGGGGGACTGCTGCTCCTGGC CTCATCGTGGGCAGCTCTGTTGGGGGACTGCTGCTCCTGGC Direct Loss 0.955909675117572 0 0.957783 0.9300903 prediction 0.911819350235144 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31342551 chr16:31342551 synonymous SNV . 0 21 hm5C_associated_SNPs_48981 0 0 0 0 2 ITGAM chr16:31342596 5'GT 31342596 Upstream 46bp
chr3 14989286 14989286 1 - G A rs547567795 14989286 - 14989266 14989306 41 GATGGCGGGAGCCCGGGGGCCGCGGGCTCGCGGGGCAGCGG GATGGCGGGAGCCCGGGGGCTGCGGGCTCGCGGGGCAGCGG Direct Loss 0.955904987417867 0 0.93200505 0.91655123 prediction 0.911809974835733 Functional Loss - FGD5-AS1 ENSG00000225733 ncRNA_exonic Human antisense chr3:14989286 chr3:14989286 . . 0 21 hm5C_associated_SNPs_48982 0 0 1 0 1 FGD5-AS1 chr3:14989246 5'GT 14989246 Upstream 41bp
chr4 185940787 185940787 1 + C T HNSC 185940787 + 185940767 185940807 41 CCTGAGCGCAGGGCGAACCTCAGGAGGCTCTGGCGCAGATC CCTGAGCGCAGGGCGAACCTTAGGAGGCTCTGGCGCAGATC Direct Loss 0.955901388404345 0 0.90964913 0.9017297 prediction 0.91180277680869 Functional Loss - HELT ENSG00000187821 CDS Human protein_coding chr4:185940787 chr4:185940787 stopgain 0.000 0 21 hm5C_associated_SNPs_48983 0 0 0 0 1 HELT chr4:185940778 3'AG 185940778 Downstream 10bp
chr11 47283128 47283128 1 + C T COAD 47283128 + 47283108 47283148 41 TGGCACCAGATCCCCATAGCCGGGAGGCCCGTCAGCAGCGC TGGCACCAGATCCCCATAGCTGGGAGGCCCGTCAGCAGCGC Direct Loss 0.955888092362071 0 0.8949062 0.8790709 prediction 0.911776184724141 Functional Loss - NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47283128 chr11:47283128 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_48984 0 0 1 0 1 NR1H3 chr11:47283098 3'AG 47283098 Downstream 31bp
chrX 49099393 49099393 1 + C T UCEC 49099393 + 49099373 49099413 41 GGGCCATTGGGAGCCAAATTCGGGACCAGCTGGCACTGCCT GGGCCATTGGGAGCCAAATTTGGGACCAGCTGGCACTGCCT Direct Loss 0.955865449667654 0 0.94399893 0.91872865 prediction 0.911730899335309 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49099393 chrX:49099393 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_48987 0 0 0 0 2 CCDC22 chrX:49099352 3'AG 49099352 Downstream 42bp
chrX 49099393 49099393 1 + C T UCEC 49099393 + 49099373 49099413 41 GGGCCATTGGGAGCCAAATTCGGGACCAGCTGGCACTGCCT GGGCCATTGGGAGCCAAATTTGGGACCAGCTGGCACTGCCT Direct Loss 0.955865449667654 0 0.94399893 0.91872865 prediction 0.911730899335309 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49099393 chrX:49099393 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_48987 0 0 0 0 2 CCDC22 chrX:49099458 5'GT 49099458 Upstream 66bp
chr1 111862928 111862928 1 + C T GBM 111862928 + 111862908 111862948 41 TAGCAGCTCTGGAGGCAGCTCGGGAGGCAGTGGATTCTGTG TAGCAGCTCTGGAGGCAGCTTGGGAGGCAGTGGATTCTGTG Direct Loss 0.955856437357149 0 0.9149374 0.912083 prediction 0.911712874714298 Functional Loss - CHIA ENSG00000134216 CDS Human protein_coding chr1:111862928 chr1:111862928 nonsynonymous SNV 0.371 0 21 hm5C_associated_SNPs_48988 0 0 0 0 1 CHIA chr1:111862835 3'AG 111862835 Downstream 94bp
chr13 31506863 31506863 1 + C A UCEC 31506863 + 31506843 31506883 41 CTGGGGCAGAATGGAACAGCCTGGGCCCAGGGCTCCGGATC CTGGGGCAGAATGGAACAGCATGGGCCCAGGGCTCCGGATC Direct Loss 0.95584883930471 0 0.77758855 0.4153701 prediction 0.911697678609419 Functional Loss - TEX26 ENSG00000175664 CDS Human protein_coding chr13:31506863 chr13:31506863 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48989 0 0 0 0 1 TEX26 chr13:31506913 5'GT 31506913 Upstream 51bp
chr15 91488154 91488154 1 + C G LUSC 91488154 + 91488134 91488174 41 TTTTGGAAGTGGGGGGCTCTCTACAGGACCCTCCTGGGGAG TTTTGGAAGTGGGGGGCTCTGTACAGGACCCTCCTGGGGAG Direct Loss 0.955815165366794 0 0.87424767 0.3628358 prediction 0.911630330733588 Functional Loss - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91488154 chr15:91488154 nonsynonymous SNV 0.452 0 21 hm5C_associated_SNPs_48994 0 0 1 0 1 UNC45A chr15:91488122 3'AG 91488122 Downstream 33bp
chr6 146865181 146865181 1 + C A rs142273767 146865181 + 146865161 146865201 41 CAGCACTACCGGGCCACCATCGGGGTGGACTTCGCCCTCAA CAGCACTACCGGGCCACCATAGGGGTGGACTTCGCCCTCAA Direct Loss 0.955796112491224 0 0.96535325 0.9343352 prediction 0.911592224982449 Functional Loss - RAB32 ENSG00000118508 CDS Human protein_coding chr6:146865181 chr6:146865181 synonymous SNV . 0 21 hm5C_associated_SNPs_48996 0 0 1 0 1 RAB32 chr6:146865257 5'GT 146865257 Upstream 77bp
chr10 4873008 4873008 1 + C T GBM 4873008 + 4872988 4873028 41 TCAAGGAAGGCGCTGTAAGACGGGAGGATCTGTTCATTGCC TCAAGGAAGGCGCTGTAAGATGGGAGGATCTGTTCATTGCC Direct Loss 0.955792125540493 0 0.48148486 0.32373166 prediction 0.911584251080985 Functional Loss - AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4873008 chr10:4873008 nonsynonymous SNV 0.021 4 21 hm5C_associated_SNPs_48997 0 0 0 1 1 AKR1E2 chr10:4873034 5'GT 4873034 Upstream 27bp
chr2 232262533 232262533 1 + C A UCEC 232262533 + 232262513 232262553 41 GTCTCACCCCTGGTCAGTTTCTGCAGGAGCCTCCGCCACCC GTCTCACCCCTGGTCAGTTTATGCAGGAGCCTCCGCCACCC Direct Loss 0.955787118792827 0 0.7561976 0.6584586 prediction 0.911574237585654 Functional Loss - B3GNT7 ENSG00000156966 CDS Human protein_coding chr2:232262533 chr2:232262533 nonsynonymous SNV 0.075 0 21 hm5C_associated_SNPs_48999 0 0 0 0 1 B3GNT7 chr2:232262442 3'AG 232262442 Downstream 92bp
chr3 183824060 183824060 1 + C T COAD 183824060 + 183824040 183824080 41 GCTGCTCCACTGCAACAGCCCGGGGAGATGCTGTCCCACTG GCTGCTCCACTGCAACAGCCTGGGGAGATGCTGTCCCACTG Direct Loss 0.955766666974545 0 0.9053171 0.8717921 prediction 0.911533333949091 Functional Loss - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183824060 chr3:183824060 nonsynonymous SNV 0.310 1 21 hm5C_associated_SNPs_49002 0 0 0 0 1 HTR3E chr3:183824131 5'GT 183824131 Upstream 72bp
chr1 197889240 197889240 1 + C A LUAD 197889240 + 197889220 197889260 41 GCTGTGAATGTAAGCTGGCCCTCGAGTCCGAGCTCACCTGC GCTGTGAATGTAAGCTGGCCATCGAGTCCGAGCTCACCTGC Direct Loss 0.955737275067203 0 0.40344328 0.22206178 prediction 0.911474550134406 Functional Loss - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197889240 chr1:197889240 nonsynonymous SNV 0.989 5 21 hm5C_associated_SNPs_49004 0 0 0 0 1 LHX9 chr1:197889304 5'GT 197889304 Upstream 65bp
chr1 173743555 173743555 1 + C T ESCA 173743555 + 173743535 173743575 41 TATGCTGTAGGTGGCTCTGACGGGACATCTCCTCTCAACAC TATGCTGTAGGTGGCTCTGATGGGACATCTCCTCTCAACAC Direct Loss 0.955725831932484 0 0.88981116 0.41037005 prediction 0.911451663864967 Functional Loss - KLHL20 ENSG00000076321 CDS Human protein_coding chr1:173743555 chr1:173743555 synonymous SNV . 0 21 hm5C_associated_SNPs_49005 0 0 0 0 1 KLHL20 chr1:173743577 5'GT 173743577 Upstream 23bp
chr11 60482498 60482498 1 + C T LUAD 60482498 + 60482478 60482518 41 TCTGCTCTGCCTACAGAACCCTGGAATGGCGATTTCTGGCG TCTGCTCTGCCTACAGAACCTTGGAATGGCGATTTCTGGCG Direct Loss 0.955704022348589 0 0.33960533 0.2972808 prediction 0.911408044697179 Functional Loss - MS4A8 ENSG00000166959 CDS Human protein_coding chr11:60482498 chr11:60482498 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_49009 0 0 0 0 1 MS4A8 chr11:60482494 3'AG 60482494 Downstream 5bp
chr16 81069793 81069793 1 + C T GBM 81069793 + 81069773 81069813 41 GCGCTCAACATGCACCTAGTCAAGAGCCACCGCCTGCAGGT GCGCTCAACATGCACCTAGTTAAGAGCCACCGCCTGCAGGT Direct Loss 0.955686844846738 0 0.7506854 0.2656141 prediction 0.911373689693477 Functional Loss - ATMIN ENSG00000166454 CDS Human protein_coding chr16:81069793 chr16:81069793 synonymous SNV . 0 21 hm5C_associated_SNPs_49010 0 0 1 0 1 ATMIN chr16:81069811 5'GT 81069811 Upstream 19bp
chr19 10395489 10395489 1 + C G rs112301533 10395489 + 10395469 10395509 41 ACTGGACGAGAGGGATTGTCCGGGAAACTGGACGTGGCCAG ACTGGACGAGAGGGATTGTCGGGGAAACTGGACGTGGCCAG Direct Loss 0.955684158503989 0 0.88924444 0.93795127 prediction 0.911368317007978 Functional Loss - ICAM1 ENSG00000090339 CDS Human protein_coding chr19:10395489 chr19:10395489 nonsynonymous SNV 0.024 3 21 hm5C_associated_SNPs_49011 0 0 1 0 1 ICAM1 chr19:10395459 3'AG 10395459 Downstream 31bp
chr19 30312684 30312684 1 + C A OV 30312684 + 30312664 30312704 41 TGTGACAGATGGAGCTTGTTCAGGAGATGAAATTCTCACCA TGTGACAGATGGAGCTTGTTAAGGAGATGAAATTCTCACCA Direct Loss 0.955667914476989 0 0.89169204 0.3710873 prediction 0.911335828953978 Functional Loss - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30312684 chr19:30312684 stopgain 0.995 1 21 hm5C_associated_SNPs_49013 0 0 1 0 2 CCNE1 chr19:30312629 3'AG 30312629 Downstream 56bp
chr19 30312684 30312684 1 + C A OV 30312684 + 30312664 30312704 41 TGTGACAGATGGAGCTTGTTCAGGAGATGAAATTCTCACCA TGTGACAGATGGAGCTTGTTAAGGAGATGAAATTCTCACCA Direct Loss 0.955667914476989 0 0.89169204 0.3710873 prediction 0.911335828953978 Functional Loss - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30312684 chr19:30312684 stopgain 0.995 1 21 hm5C_associated_SNPs_49013 0 0 1 0 2 CCNE1 chr19:30312724 5'GT 30312724 Upstream 41bp
chr2 242098754 242098754 1 + C T UCEC 242098754 + 242098734 242098774 41 ATCTGGAGGCGCTAACAGAGCTGGAGTGAGTCATGAGACCC ATCTGGAGGCGCTAACAGAGTTGGAGTGAGTCATGAGACCC Direct Loss 0.955628734933226 0 0.2381233 0.19138435 prediction 0.911257469866452 Functional Loss - PPP1R7 ENSG00000115685 CDS Human protein_coding chr2:242098754 chr2:242098754 synonymous SNV . 0 21 hm5C_associated_SNPs_49021 0 0 1 0 1 PPP1R7 chr2:242098758 5'GT 242098758 Upstream 5bp
chr19 7712143 7712143 1 + C A rs139200597 7712143 + 7712123 7712163 41 GCCGCTGTCAGGTGAGGCCCCGGGGCCGCCCCCGCCCACGC GCCGCTGTCAGGTGAGGCCCAGGGGCCGCCCCCGCCCACGC Direct Loss 0.955589638463621 0 0.9142838 0.91883075 prediction 0.911179276927243 Functional Loss - STXBP2 ENSG00000076944 intronic Human protein_coding chr19:7712143 chr19:7712143 . . 0 21 hm5C_associated_SNPs_49024 0 0 1 0 1 STXBP2 chr19:7712048 3'AG 7712048 Downstream 96bp
chr19 11560163 11560163 1 + C T PRAD 11560163 + 11560143 11560183 41 GTACCTCATGGAGCTGATGACGCCAGCCGCCTGCCCGGAGC GTACCTCATGGAGCTGATGATGCCAGCCGCCTGCCCGGAGC Direct Loss 0.955544002979396 0 0.86918855 0.2732458 prediction 0.911088005958793 Functional Loss - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11560163 chr19:11560163 nonsynonymous SNV 0.927 4 21 hm5C_associated_SNPs_49026 0 0 1 0 2 PRKCSH chr19:11560081 3'AG 11560081 Downstream 83bp
chr19 11560163 11560163 1 + C T PRAD 11560163 + 11560143 11560183 41 GTACCTCATGGAGCTGATGACGCCAGCCGCCTGCCCGGAGC GTACCTCATGGAGCTGATGATGCCAGCCGCCTGCCCGGAGC Direct Loss 0.955544002979396 0 0.86918855 0.2732458 prediction 0.911088005958793 Functional Loss - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11560163 chr19:11560163 nonsynonymous SNV 0.927 4 21 hm5C_associated_SNPs_49026 0 0 1 0 2 PRKCSH chr19:11560243 5'GT 11560243 Upstream 81bp
chr22 44340642 44340642 1 + C G rs144730517 44340642 + 44340622 44340662 41 GGTGACCTCACAGGTGTTCACTCGAGTGCTGATGTGTCTGC GGTGACCTCACAGGTGTTCAGTCGAGTGCTGATGTGTCTGC Direct Loss 0.955513984180592 0 0.5086182 0.3985813 prediction 0.911027968361185 Functional Loss - PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44340642 chr22:44340642 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_49028 0 0 1 0 2 PNPLA3 chr22:44340571 3'AG 44340571 Downstream 72bp
chr22 44340642 44340642 1 + C G rs144730517 44340642 + 44340622 44340662 41 GGTGACCTCACAGGTGTTCACTCGAGTGCTGATGTGTCTGC GGTGACCTCACAGGTGTTCAGTCGAGTGCTGATGTGTCTGC Direct Loss 0.955513984180592 0 0.5086182 0.3985813 prediction 0.911027968361185 Functional Loss - PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44340642 chr22:44340642 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_49028 0 0 1 0 2 PNPLA3 chr22:44340675 5'GT 44340675 Upstream 34bp
chr19 30303617 30303617 1 + C A rs139551337 30303617 + 30303597 30303637 41 GATGCGAAGGAGCGGGACACCATGAAGGAGGACGGCGGCGC GATGCGAAGGAGCGGGACACAATGAAGGAGGACGGCGGCGC Direct Loss 0.955497994187855 0 0.29913273 0.56316996 prediction 0.91099598837571 Functional Loss - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30303617 chr19:30303617 synonymous SNV . 0 21 hm5C_associated_SNPs_49031 0 0 1 0 2 CCNE1 chr19:30303596 3'AG 30303596 Downstream 22bp
chr19 30303617 30303617 1 + C A rs139551337 30303617 + 30303597 30303637 41 GATGCGAAGGAGCGGGACACCATGAAGGAGGACGGCGGCGC GATGCGAAGGAGCGGGACACAATGAAGGAGGACGGCGGCGC Direct Loss 0.955497994187855 0 0.29913273 0.56316996 prediction 0.91099598837571 Functional Loss - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30303617 chr19:30303617 synonymous SNV . 0 21 hm5C_associated_SNPs_49031 0 0 1 0 2 CCNE1 chr19:30303683 5'GT 30303683 Upstream 67bp
chr17 2278872 2278872 1 + C G rs61739394 2278872 + 2278852 2278892 41 CCTGAGCAGGAAGCAGGACCCGGGACTCCGGGCACCGCCGT CCTGAGCAGGAAGCAGGACCGGGGACTCCGGGCACCGCCGT Direct Loss 0.955453438728171 0 0.9101465 0.903155 prediction 0.910906877456342 Functional Loss - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2278872 chr17:2278872 synonymous SNV . 0 21 hm5C_associated_SNPs_49038 0 0 1 0 1 SGSM2 chr17:2278786 3'AG 2278786 Downstream 87bp
chr16 230481 230481 1 + C A rs1005364 230481 + 230461 230501 41 GGGCGCGGCGGGTTCCAGCGCGGGGATGGCGCTGTCCGCGG GGGCGCGGCGGGTTCCAGCGAGGGGATGGCGCTGTCCGCGG Direct Loss 0.955439363693921 0 0.9085981 0.9078727 prediction 0.910878727387842 Functional Loss - HBQ1 ENSG00000086506 UTR5 Human protein_coding chr16:230481 chr16:230481 . . 0 21 hm5C_associated_SNPs_49042 0 0 1 0 1 HBQ1 chr16:230580 5'GT 230580 Upstream 100bp
chr6 84563453 84563453 1 + C A LUSC 84563453 + 84563433 84563473 41 CCCTGGGTGGACGCCGGAGGCAAGAAAGAAGAGGAGACGCC CCCTGGGTGGACGCCGGAGGAAAGAAAGAAGAGGAGACGCC Direct Loss 0.955415780838583 0 0.545624 0.3700188 prediction 0.910831561677165 Functional Loss - RIPPLY2 ENSG00000203877 CDS Human protein_coding chr6:84563453 chr6:84563453 synonymous SNV . 0 21 hm5C_associated_SNPs_49045 0 0 0 0 2 RIPPLY2 chr6:84563414 3'AG 84563414 Downstream 40bp
chr6 84563453 84563453 1 + C A LUSC 84563453 + 84563433 84563473 41 CCCTGGGTGGACGCCGGAGGCAAGAAAGAAGAGGAGACGCC CCCTGGGTGGACGCCGGAGGAAAGAAAGAAGAGGAGACGCC Direct Loss 0.955415780838583 0 0.545624 0.3700188 prediction 0.910831561677165 Functional Loss - RIPPLY2 ENSG00000203877 CDS Human protein_coding chr6:84563453 chr6:84563453 synonymous SNV . 0 21 hm5C_associated_SNPs_49045 0 0 0 0 2 RIPPLY2 chr6:84563492 5'GT 84563492 Upstream 40bp
chr11 70282413 70282413 1 + C T PRAD 70282413 + 70282393 70282433 41 TCATCTCCTTCCTGAGGAGCCGGGAGGCTGGACCAGTCCCG TCATCTCCTTCCTGAGGAGCTGGGAGGCTGGACCAGTCCCG Direct Loss 0.955402649698935 0 0.9003925 0.89108187 prediction 0.910805299397869 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70282413 chr11:70282413 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_49048 0 0 1 0 1 CTTN chr11:70282388 3'AG 70282388 Downstream 26bp
chr12 72092833 72092833 1 + C T SKCM 72092833 + 72092813 72092853 41 TATTGCATTTGGTGGTTTAGCTGGATTACTAGGATCAATTG TATTGCATTTGGTGGTTTAGTTGGATTACTAGGATCAATTG Direct Loss 0.955394787540805 0 0.86698234 0.861081 prediction 0.910789575081611 Functional Loss - TMEM19 ENSG00000139291 CDS Human protein_coding chr12:72092833 chr12:72092833 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_49050 0 0 1 0 1 TMEM19 chr12:72092889 5'GT 72092889 Upstream 57bp
chr9 101589132 101589132 1 + C A LUSC 101589132 + 101589112 101589152 41 GCCTGGTGCGAGCCCGGCTGCTGGGGGCGTCTGCGGCGAGG GCCTGGTGCGAGCCCGGCTGATGGGGGCGTCTGCGGCGAGG Direct Loss 0.955357678400997 0 0.88972294 0.8850045 prediction 0.910715356801994 Functional Loss - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101589132 chr9:101589132 nonsynonymous SNV 0.666 4 21 hm5C_associated_SNPs_49053 0 0 0 0 2 GALNT12 chr9:101589034 3'AG 101589034 Downstream 99bp
chr9 101589132 101589132 1 + C A LUSC 101589132 + 101589112 101589152 41 GCCTGGTGCGAGCCCGGCTGCTGGGGGCGTCTGCGGCGAGG GCCTGGTGCGAGCCCGGCTGATGGGGGCGTCTGCGGCGAGG Direct Loss 0.955357678400997 0 0.88972294 0.8850045 prediction 0.910715356801994 Functional Loss - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101589132 chr9:101589132 nonsynonymous SNV 0.666 4 21 hm5C_associated_SNPs_49053 0 0 0 0 2 GALNT12 chr9:101589223 5'GT 101589223 Upstream 92bp
chr17 62079162 62079162 1 + C A UCEC 62079162 + 62079142 62079182 41 AACTGCACCAGCTTCCTGCTCTGGATACAGCCCCGGAGCCG AACTGCACCAGCTTCCTGCTATGGATACAGCCCCGGAGCCG Direct Loss 0.955326598131779 0 0.5043719 0.35023585 prediction 0.910653196263559 Functional Loss - PRR29 ENSG00000224383 CDS Human protein_coding chr17:62079162 chr17:62079162 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_49056 0 0 0 0 1 PRR29 chr17:62079093 3'AG 62079093 Downstream 70bp
chrX 46719498 46719498 1 + C T rs1805147 46719498 + 46719478 46719518 41 AGGATGCTCAAAGGGTTTTTCGGGAAAAAGCACCTGACTTC AGGATGCTCAAAGGGTTTTTTGGGAAAAAGCACCTGACTTC Direct Loss 0.955319215573084 0 0.9083562 0.79390097 prediction 0.910638431146167 Functional Loss - RP2 ENSG00000102218 CDS Human protein_coding chrX:46719498 chrX:46719498 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_49058 2 0 1 0 2 RP2 chrX:46719423 3'AG 46719423 Downstream 76bp
chrX 46719498 46719498 1 + C T rs1805147 46719498 + 46719478 46719518 41 AGGATGCTCAAAGGGTTTTTCGGGAAAAAGCACCTGACTTC AGGATGCTCAAAGGGTTTTTTGGGAAAAAGCACCTGACTTC Direct Loss 0.955319215573084 0 0.9083562 0.79390097 prediction 0.910638431146167 Functional Loss - RP2 ENSG00000102218 CDS Human protein_coding chrX:46719498 chrX:46719498 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_49058 2 0 1 0 2 RP2 chrX:46719537 5'GT 46719537 Upstream 40bp
chr3 184297566 184297566 1 + C T COAD 184297566 + 184297546 184297586 41 ACGCTGAAGGTGGGCTACACCGAGAGGCAGCGGCGGGACTT ACGCTGAAGGTGGGCTACACTGAGAGGCAGCGGCGGGACTT Direct Loss 0.955299543519475 0 0.91116714 0.90873814 prediction 0.910599087038951 Functional Loss - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184297566 chr3:184297566 synonymous SNV . 0 21 hm5C_associated_SNPs_49059 0 0 0 0 1 EPHB3 chr3:184297475 3'AG 184297475 Downstream 92bp
chr1 229438681 229438681 1 + C T UCEC 229438681 + 229438661 229438701 41 CTTGAGACAGCTGAGGTCACCGCGGCGCGCACAGGCCCCGA CTTGAGACAGCTGAGGTCACTGCGGCGCGCACAGGCCCCGA Direct Loss 0.955275313245357 0 0.45121974 0.5517617 prediction 0.910550626490713 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229438681 chr1:229438681 nonsynonymous SNV 0.407 1 21 hm5C_associated_SNPs_49061 0 0 1 0 2 RAB4A chr1:229438609 3'AG 229438609 Downstream 73bp
chr1 229438681 229438681 1 + C T UCEC 229438681 + 229438661 229438701 41 CTTGAGACAGCTGAGGTCACCGCGGCGCGCACAGGCCCCGA CTTGAGACAGCTGAGGTCACTGCGGCGCGCACAGGCCCCGA Direct Loss 0.955275313245357 0 0.45121974 0.5517617 prediction 0.910550626490713 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229438681 chr1:229438681 nonsynonymous SNV 0.407 1 21 hm5C_associated_SNPs_49061 0 0 1 0 2 RAB4A chr1:229438736 5'GT 229438736 Upstream 56bp
chr20 31876618 31876618 1 + C T HNSC 31876618 + 31876598 31876638 41 TGCCGCTGCTCAGTGCCATGCGGGAAAAGCCAGCCGGAGGC TGCCGCTGCTCAGTGCCATGTGGGAAAAGCCAGCCGGAGGC Direct Loss 0.955273808569685 0 0.8980782 0.72279936 prediction 0.91054761713937 Functional Loss - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31876618 chr20:31876618 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_49062 0 0 0 0 2 BPIFB1 chr20:31876547 3'AG 31876547 Downstream 72bp
chr20 31876618 31876618 1 + C T HNSC 31876618 + 31876598 31876638 41 TGCCGCTGCTCAGTGCCATGCGGGAAAAGCCAGCCGGAGGC TGCCGCTGCTCAGTGCCATGTGGGAAAAGCCAGCCGGAGGC Direct Loss 0.955273808569685 0 0.8980782 0.72279936 prediction 0.91054761713937 Functional Loss - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31876618 chr20:31876618 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_49062 0 0 0 0 2 BPIFB1 chr20:31876688 5'GT 31876688 Upstream 71bp
chr19 12781095 12781095 1 + C T UCEC 12781095 + 12781075 12781115 41 GCGCAAATTCCGGGGCCACGCAGGGGTGAGTGAAAGCCTGG GCGCAAATTCCGGGGCCACGTAGGGGTGAGTGAAAGCCTGG Direct Loss 0.955223987808624 0 0.9361658 0.90752244 prediction 0.910447975617249 Functional Loss - WDR83 ENSG00000123154 CDS Human protein_coding chr19:12781095 chr19:12781095 nonsynonymous SNV 0.987 0 21 hm5C_associated_SNPs_49067 0 0 1 0 1 WDR83 chr19:12781099 5'GT 12781099 Upstream 5bp
chr3 195954608 195954608 1 + C T BLCA 195954608 + 195954588 195954628 41 GGTGGAAATGACCATCACCTCGTGAGTGCCCTGCCTCGCCC GGTGGAAATGACCATCACCTTGTGAGTGCCCTGCCTCGCCC Direct Loss 0.955221716027233 0 0.91856563 0.83631307 prediction 0.910443432054466 Functional Loss - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195954608 chr3:195954608 nonsynonymous SNV 0.997 0 21 hm5C_associated_SNPs_49068 0 0 0 0 2 SLC51A chr3:195954535 3'AG 195954535 Downstream 74bp
chr3 195954608 195954608 1 + C T BLCA 195954608 + 195954588 195954628 41 GGTGGAAATGACCATCACCTCGTGAGTGCCCTGCCTCGCCC GGTGGAAATGACCATCACCTTGTGAGTGCCCTGCCTCGCCC Direct Loss 0.955221716027233 0 0.91856563 0.83631307 prediction 0.910443432054466 Functional Loss - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195954608 chr3:195954608 nonsynonymous SNV 0.997 0 21 hm5C_associated_SNPs_49068 0 0 0 0 2 SLC51A chr3:195954608 5'GT 195954608 Upstream 1bp
chr5 6739866 6739866 1 + C T UCEC 6739866 + 6739846 6739886 41 GACATAGACCTGGTGGTCTTCGGGAAATGGGAGCGTCCTCC GACATAGACCTGGTGGTCTTTGGGAAATGGGAGCGTCCTCC Direct Loss 0.955200510094158 0 0.89711154 0.79545116 prediction 0.910401020188315 Functional Loss - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6739866 chr5:6739866 synonymous SNV . 0 21 hm5C_associated_SNPs_49070 0 0 1 0 2 PAPD7 chr5:6739845 3'AG 6739845 Downstream 22bp
chr5 6739866 6739866 1 + C T UCEC 6739866 + 6739846 6739886 41 GACATAGACCTGGTGGTCTTCGGGAAATGGGAGCGTCCTCC GACATAGACCTGGTGGTCTTTGGGAAATGGGAGCGTCCTCC Direct Loss 0.955200510094158 0 0.89711154 0.79545116 prediction 0.910401020188315 Functional Loss - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6739866 chr5:6739866 synonymous SNV . 0 21 hm5C_associated_SNPs_49070 0 0 1 0 2 PAPD7 chr5:6739965 5'GT 6739965 Upstream 100bp
chr1 158325754 158325754 1 + C T CESC 158325754 + 158325734 158325774 41 AGCAGGAGCAGCGGGGCACTCAGCGAGGGGACGTCCTGCCT AGCAGGAGCAGCGGGGCACTTAGCGAGGGGACGTCCTGCCT Direct Loss 0.955183787653089 0 0.8839894 0.7440376 prediction 0.910367575306177 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325754 chr1:158325754 stopgain 0.561 0 21 hm5C_associated_SNPs_49071 0 0 0 0 1 CD1E chr1:158325791 5'GT 158325791 Upstream 38bp
chr16 20803630 20803630 1 + C T UCEC 20803630 + 20803610 20803650 41 GTTGCAGAGTCAGCTGTTGTCAGCAGCCCAGACCCCATCAG GTTGCAGAGTCAGCTGTTGTTAGCAGCCCAGACCCCATCAG Direct Loss 0.955177762437103 0 0.88599944 0.46332753 prediction 0.910355524874206 Functional Loss - ACSM3 ENSG00000005187 CDS Human protein_coding chr16:20803630 chr16:20803630 synonymous SNV . 0 21 hm5C_associated_SNPs_49072 0 0 1 0 2 ACSM3 chr16:20803558 3'AG 20803558 Downstream 73bp
chr16 20803630 20803630 1 + C T UCEC 20803630 + 20803610 20803650 41 GTTGCAGAGTCAGCTGTTGTCAGCAGCCCAGACCCCATCAG GTTGCAGAGTCAGCTGTTGTTAGCAGCCCAGACCCCATCAG Direct Loss 0.955177762437103 0 0.88599944 0.46332753 prediction 0.910355524874206 Functional Loss - ACSM3 ENSG00000005187 CDS Human protein_coding chr16:20803630 chr16:20803630 synonymous SNV . 0 21 hm5C_associated_SNPs_49072 0 0 1 0 2 ACSM3 chr16:20803657 5'GT 20803657 Upstream 28bp
chr1 151536461 151536461 1 + C T SKCM 151536461 + 151536441 151536481 41 AGAGTGAGGTCCAGTACATCCAGGAGGTGGGCACCCCTTAC AGAGTGAGGTCCAGTACATCTAGGAGGTGGGCACCCCTTAC Direct Loss 0.955166921385963 0 0.8811412 0.56666255 prediction 0.910333842771927 Functional Loss - TUFT1 ENSG00000143367 CDS Human protein_coding chr1:151536461 chr1:151536461 stopgain 0.999 1 21 hm5C_associated_SNPs_49075 0 0 1 0 2 TUFT1 chr1:151536380 3'AG 151536380 Downstream 82bp
chr1 151536461 151536461 1 + C T SKCM 151536461 + 151536441 151536481 41 AGAGTGAGGTCCAGTACATCCAGGAGGTGGGCACCCCTTAC AGAGTGAGGTCCAGTACATCTAGGAGGTGGGCACCCCTTAC Direct Loss 0.955166921385963 0 0.8811412 0.56666255 prediction 0.910333842771927 Functional Loss - TUFT1 ENSG00000143367 CDS Human protein_coding chr1:151536461 chr1:151536461 stopgain 0.999 1 21 hm5C_associated_SNPs_49075 0 0 1 0 2 TUFT1 chr1:151536466 5'GT 151536466 Upstream 6bp
chr1 156144970 156144970 1 + C T LAML 156144970 + 156144950 156144990 41 GTGTGGACTGTGTCCTTGCCCGGGACCCCCACTGTGCCTGG GTGTGGACTGTGTCCTTGCCTGGGACCCCCACTGTGCCTGG Direct Loss 0.955158963369592 0 0.86498845 0.6662965 prediction 0.910317926739185 Functional Loss - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156144970 chr1:156144970 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_49076 1 0 0 0 1 SEMA4A chr1:156145034 5'GT 156145034 Upstream 65bp
chr19 33464178 33464178 1 + C T COAD 33464178 + 33464158 33464198 41 TTGTGGCCAATGAGAAATGGCGCGGGTCACAGCTGGCGCAG TTGTGGCCAATGAGAAATGGTGCGGGTCACAGCTGGCGCAG Direct Loss 0.955141194791771 0 0.86334044 0.8308954 prediction 0.910282389583541 Functional Loss - FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33464178 chr19:33464178 nonsynonymous SNV 0.909 2 21 hm5C_associated_SNPs_49077 0 0 0 0 2 FAAP24 chr19:33464090 3'AG 33464090 Downstream 89bp
chr19 33464178 33464178 1 + C T COAD 33464178 + 33464158 33464198 41 TTGTGGCCAATGAGAAATGGCGCGGGTCACAGCTGGCGCAG TTGTGGCCAATGAGAAATGGTGCGGGTCACAGCTGGCGCAG Direct Loss 0.955141194791771 0 0.86334044 0.8308954 prediction 0.910282389583541 Functional Loss - FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33464178 chr19:33464178 nonsynonymous SNV 0.909 2 21 hm5C_associated_SNPs_49077 0 0 0 0 2 FAAP24 chr19:33464208 5'GT 33464208 Upstream 31bp
chr12 56554431 56554431 1 + C T UCEC 56554431 + 56554411 56554451 41 GTTTGTGAGGCATATCCTGTCGGGGTGACGGGCCCATGGGG GTTTGTGAGGCATATCCTGTTGGGGTGACGGGCCCATGGGG Direct Loss 0.955118143376996 0 0.9440298 0.8281272 prediction 0.910236286753992 Functional Loss - MYL6 ENSG00000092841 CDS Human protein_coding chr12:56554431 chr12:56554431 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_49079 0 0 1 0 2 MYL6 chr12:56554410 3'AG 56554410 Downstream 22bp
chr12 56554431 56554431 1 + C T UCEC 56554431 + 56554411 56554451 41 GTTTGTGAGGCATATCCTGTCGGGGTGACGGGCCCATGGGG GTTTGTGAGGCATATCCTGTTGGGGTGACGGGCCCATGGGG Direct Loss 0.955118143376996 0 0.9440298 0.8281272 prediction 0.910236286753992 Functional Loss - MYL6 ENSG00000092841 CDS Human protein_coding chr12:56554431 chr12:56554431 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_49079 0 0 1 0 2 MYL6 chr12:56554454 5'GT 56554454 Upstream 24bp
chr8 145150838 145150838 1 + C G LUAD 145150838 + 145150818 145150858 41 GTGCGGGGCTGGCCATGGCTCTGCATTCGGCTGTGAGTGCC GTGCGGGGCTGGCCATGGCTGTGCATTCGGCTGTGAGTGCC Direct Loss 0.955105599395956 0 0.36680928 0.3169862 prediction 0.910211198791912 Functional Loss - CYC1 ENSG00000179091 CDS Human protein_coding chr8:145150838 chr8:145150838 nonsynonymous SNV 0.868 1 21 hm5C_associated_SNPs_49081 0 0 1 0 1 CYC1 chr8:145150932 5'GT 145150932 Upstream 95bp
chr2 231742802 231742802 1 + C T UCEC 231742802 + 231742782 231742822 41 GTGGTGGAGACGCTCATCTGCGGGGTGGTGTGAGGCCCTCC GTGGTGGAGACGCTCATCTGTGGGGTGGTGTGAGGCCCTCC Direct Loss 0.955096837382498 0 0.9238541 0.7417882 prediction 0.910193674764995 Functional Loss - ITM2C ENSG00000135916 CDS Human protein_coding chr2:231742802 chr2:231742802 synonymous SNV . 0 21 hm5C_associated_SNPs_49084 0 0 1 0 1 ITM2C chr2:231742723 3'AG 231742723 Downstream 80bp
chr1 228336416 228336416 1 + C T rs182734829 228336416 + 228336396 228336436 41 TGAGGCTTGCTGTCTGTTCTCGGCACCCCGGGCCCATACAG TGAGGCTTGCTGTCTGTTCTTGGCACCCCGGGCCCATACAG Direct Loss 0.955084724926761 0 0.9071627 0.6580272 prediction 0.910169449853522 Functional Loss - GUK1 ENSG00000143774 CDS Human protein_coding chr1:228336416 chr1:228336416 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_49088 0 0 1 0 1 GUK1 chr1:228336366 3'AG 228336366 Downstream 51bp
chrX 79281207 79281207 1 + C A UCEC 79281207 + 79281187 79281227 41 TCACCCTGCTCGGGAGAGACCTGGATGCGGCAGATCATCAG TCACCCTGCTCGGGAGAGACATGGATGCGGCAGATCATCAG Direct Loss 0.955082048789679 0 0.70909417 0.49486795 prediction 0.910164097579357 Functional Loss - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79281207 chrX:79281207 synonymous SNV . 0 21 hm5C_associated_SNPs_49089 0 0 0 0 1 TBX22 chrX:79281276 5'GT 79281276 Upstream 70bp
chr17 33475325 33475325 1 + C T SARC 33475325 + 33475305 33475345 41 AGCTGAAGGAGGAAGGAAACCGGCATTTCCAGCTCCAGGAC AGCTGAAGGAGGAAGGAAACTGGCATTTCCAGCTCCAGGAC Direct Loss 0.955063721247735 0 0.5441266 0.36772567 prediction 0.91012744249547 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33475325 chr17:33475325 nonsynonymous SNV 0.976 1 21 hm5C_associated_SNPs_49093 0 0 0 0 1 UNC45B chr17:33475280 3'AG 33475280 Downstream 46bp
chr11 60561526 60561526 1 + C A LUSC 60561526 + 60561506 60561546 41 TCATCTCCAAGGATCTCTTTCTGGAGAGCCCATTTGAGTCC TCATCTCCAAGGATCTCTTTATGGAGAGCCCATTTGAGTCC Direct Loss 0.955049149879414 0 0.19212204 0.08373615 prediction 0.910098299758827 Functional Loss - MS4A10 ENSG00000172689 CDS Human protein_coding chr11:60561526 chr11:60561526 nonsynonymous SNV 0.978 2 21 hm5C_associated_SNPs_49095 0 0 0 0 2 MS4A10 chr11:60561445 3'AG 60561445 Downstream 82bp
chr11 60561526 60561526 1 + C A LUSC 60561526 + 60561506 60561546 41 TCATCTCCAAGGATCTCTTTCTGGAGAGCCCATTTGAGTCC TCATCTCCAAGGATCTCTTTATGGAGAGCCCATTTGAGTCC Direct Loss 0.955049149879414 0 0.19212204 0.08373615 prediction 0.910098299758827 Functional Loss - MS4A10 ENSG00000172689 CDS Human protein_coding chr11:60561526 chr11:60561526 nonsynonymous SNV 0.978 2 21 hm5C_associated_SNPs_49095 0 0 0 0 2 MS4A10 chr11:60561576 5'GT 60561576 Upstream 51bp
chr17 27064895 27064895 1 + C A STAD 27064895 + 27064875 27064915 41 CCACTGTCGTCAGTGTATGCCTGGGGTGGTGGGCTGGGCAC CCACTGTCGTCAGTGTATGCATGGGGTGGTGGGCTGGGCAC Direct Loss 0.955048655541022 0 0.7608298 0.54447144 prediction 0.910097311082044 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27064895 chr17:27064895 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_49096 0 0 1 0 1 NEK8 chr17:27064837 3'AG 27064837 Downstream 59bp
chr1 8030993 8030993 1 + C T UCEC 8030993 + 8030973 8031013 41 TACTGAAGGAGCAGGAAAACCGGAAGGGCCTGATAGCCGCC TACTGAAGGAGCAGGAAAACTGGAAGGGCCTGATAGCCGCC Direct Loss 0.955046473476421 0 0.7869038 0.40396202 prediction 0.910092946952843 Functional Loss - PARK7 ENSG00000116288 CDS Human protein_coding chr1:8030993 chr1:8030993 nonsynonymous SNV 0.093 3 21 hm5C_associated_SNPs_49097 0 0 1 0 2 PARK7 chr1:8030954 3'AG 8030954 Downstream 40bp
chr1 8030993 8030993 1 + C T UCEC 8030993 + 8030973 8031013 41 TACTGAAGGAGCAGGAAAACCGGAAGGGCCTGATAGCCGCC TACTGAAGGAGCAGGAAAACTGGAAGGGCCTGATAGCCGCC Direct Loss 0.955046473476421 0 0.7869038 0.40396202 prediction 0.910092946952843 Functional Loss - PARK7 ENSG00000116288 CDS Human protein_coding chr1:8030993 chr1:8030993 nonsynonymous SNV 0.093 3 21 hm5C_associated_SNPs_49097 0 0 1 0 2 PARK7 chr1:8031023 5'GT 8031023 Upstream 31bp
chr16 5047036 5047036 1 + C A OV 5047036 + 5047016 5047056 41 ATGCAGGGGGCTGGCATTACCAGGACATAGGTGCGTGCCTC ATGCAGGGGGCTGGCATTACAAGGACATAGGTGCGTGCCTC Direct Loss 0.95503599219616 0 0.9415797 0.92251766 prediction 0.91007198439232 Functional Loss - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5047036 chr16:5047036 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_49098 0 0 0 0 1 SEC14L5 chr16:5047045 5'GT 5047045 Upstream 10bp
chr17 4857058 4857058 1 + C T LGG 4857058 + 4857038 4857078 41 GTCCTTGGCCGTGTGTAAGGCGGGAGCAGCTGAGAAGGGGG GTCCTTGGCCGTGTGTAAGGTGGGAGCAGCTGAGAAGGGGG Direct Loss 0.955033156479508 0 0.89553136 0.6891001 prediction 0.910066312959017 Functional Loss - ENO3 ENSG00000108515 CDS Human protein_coding chr17:4857058 chr17:4857058 nonsynonymous SNV 0.975 1 21 hm5C_associated_SNPs_49099 0 0 1 0 1 ENO3 chr17:4857140 5'GT 4857140 Upstream 83bp
chr17 72759559 72759559 1 + C T LUAD 72759559 + 72759539 72759579 41 GGGGACGTGGTGTCCGCCATCAGGGCTGGCGGGGACGAGAC GGGGACGTGGTGTCCGCCATTAGGGCTGGCGGGGACGAGAC Direct Loss 0.955028572926615 0 0.9138777 0.886063 prediction 0.910057145853229 Functional Loss - SLC9A3R1 ENSG00000109062 CDS Human protein_coding chr17:72759559 chr17:72759559 synonymous SNV . 0 21 hm5C_associated_SNPs_49102 0 0 1 0 1 SLC9A3R1 chr17:72759506 3'AG 72759506 Downstream 54bp
chr2 219110212 219110212 1 + C G BLCA 219110212 + 219110192 219110232 41 TTAGCCACAGGGAACCTCCTCTGGAGCTGAAAGACACAGAC TTAGCCACAGGGAACCTCCTGTGGAGCTGAAAGACACAGAC Direct Loss 0.955009749465162 0 0.27741283 0.29014382 prediction 0.910019498930323 Functional Loss - ARPC2 ENSG00000163466 CDS Human protein_coding chr2:219110212 chr2:219110212 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_49103 0 0 1 0 2 ARPC2 chr2:219110143 3'AG 219110143 Downstream 70bp
chr2 219110212 219110212 1 + C G BLCA 219110212 + 219110192 219110232 41 TTAGCCACAGGGAACCTCCTCTGGAGCTGAAAGACACAGAC TTAGCCACAGGGAACCTCCTGTGGAGCTGAAAGACACAGAC Direct Loss 0.955009749465162 0 0.27741283 0.29014382 prediction 0.910019498930323 Functional Loss - ARPC2 ENSG00000163466 CDS Human protein_coding chr2:219110212 chr2:219110212 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_49103 0 0 1 0 2 ARPC2 chr2:219110269 5'GT 219110269 Upstream 58bp
chr5 135188504 135188504 1 + C T UCEC 135188504 + 135188484 135188524 41 AGATGCAGACACAACCGTTTCGGGACGGTAAGAGGCCAGGG AGATGCAGACACAACCGTTTTGGGACGGTAAGAGGCCAGGG Direct Loss 0.955001271054881 0 0.907148 0.76836514 prediction 0.910002542109762 Functional Loss - SLC25A48 ENSG00000145832 CDS Human protein_coding chr5:135188504 chr5:135188504 nonsynonymous SNV 0.916 1 21 hm5C_associated_SNPs_49104 0 0 0 0 1 SLC25A48 chr5:135188510 5'GT 135188510 Upstream 7bp
chr7 54612434 54612434 1 + C T BLCA 54612434 + 54612414 54612454 41 AGATCCAATGGTGGTTCCTGCGGGGGCCGGAGGACCTGGAT AGATCCAATGGTGGTTCCTGTGGGGGCCGGAGGACCTGGAT Direct Loss 0.954959502627636 0 0.93136704 0.91632617 prediction 0.909919005255271 Functional Loss - VSTM2A ENSG00000170419 CDS Human protein_coding chr7:54612434 chr7:54612434 nonsynonymous SNV 0.393 3 21 hm5C_associated_SNPs_49107 0 0 0 0 1 VSTM2A chr7:54612481 5'GT 54612481 Upstream 48bp
chr19 41726666 41726666 1 + C T SKCM 41726666 + 41726646 41726686 41 CCCCCGAGGTACATTGGCTTCGGGATGGACAGATCCTGGAG CCCCCGAGGTACATTGGCTTTGGGATGGACAGATCCTGGAG Direct Loss 0.954948795447306 0 0.91285646 0.9012929 prediction 0.909897590894611 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41726666 chr19:41726666 nonsynonymous SNV 0.513 3 21 hm5C_associated_SNPs_49109 0 0 0 0 1 AXL chr19:41726763 5'GT 41726763 Upstream 98bp
chr16 57741439 57741439 1 + C G LUAD 57741439 + 57741419 57741459 41 CTCCTGGGTCCTTGTGCTATCGGGGAAGCGCGAGGTGCCTG CTCCTGGGTCCTTGTGCTATGGGGGAAGCGCGAGGTGCCTG Direct Loss 0.954887373112753 0 0.93809175 0.8384462 prediction 0.909774746225505 Functional Loss - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57741439 chr16:57741439 nonsynonymous SNV 0.238 3 21 hm5C_associated_SNPs_49112 0 0 0 0 1 DRC7 chr16:57741372 3'AG 57741372 Downstream 68bp
chr17 41142894 41142894 1 + C T HNSC 41142894 + 41142874 41142914 41 CAGAGGATGTGAAGAAAGTCCGGGAGACGGGGCTGCACCTG CAGAGGATGTGAAGAAAGTCTGGGAGACGGGGCTGCACCTG Direct Loss 0.954882986922784 0 0.9077599 0.85717595 prediction 0.909765973845567 Functional Loss - RUNDC1 ENSG00000198863 CDS Human protein_coding chr17:41142894 chr17:41142894 nonsynonymous SNV 0.924 2 21 hm5C_associated_SNPs_49113 0 0 0 0 1 RUNDC1 chr17:41142868 3'AG 41142868 Downstream 27bp
chr1 158815411 158815411 1 + C T UCEC 158815411 + 158815391 158815431 41 GGCCCAACGGCAGGTGGATGCAAGAAGAAATGTTCCCCAAA GGCCCAACGGCAGGTGGATGTAAGAAGAAATGTTCCCCAAA Direct Loss 0.95487304823547 0 0.9004765 0.8951363 prediction 0.90974609647094 Functional Loss - MNDA ENSG00000163563 CDS Human protein_coding chr1:158815411 chr1:158815411 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_49114 0 0 0 0 1 MNDA chr1:158815377 3'AG 158815377 Downstream 35bp
chr19 17531136 17531136 1 + C G BLCA 17531136 + 17531116 17531156 41 CGGTAGATCTCCTGCACCGTCGAGGGGGCACCCGCCAGCTT CGGTAGATCTCCTGCACCGTGGAGGGGGCACCCGCCAGCTT Direct Loss 0.954862596318485 0 0.9239116 0.7000663 prediction 0.90972519263697 Functional Loss - MVB12A ENSG00000141971 CDS Human protein_coding chr19:17531136 chr19:17531136 synonymous SNV . 0 21 hm5C_associated_SNPs_49115 0 0 1 0 2 MVB12A chr19:17531122 3'AG 17531122 Downstream 15bp
chr19 17531136 17531136 1 + C G BLCA 17531136 + 17531116 17531156 41 CGGTAGATCTCCTGCACCGTCGAGGGGGCACCCGCCAGCTT CGGTAGATCTCCTGCACCGTGGAGGGGGCACCCGCCAGCTT Direct Loss 0.954862596318485 0 0.9239116 0.7000663 prediction 0.90972519263697 Functional Loss - MVB12A ENSG00000141971 CDS Human protein_coding chr19:17531136 chr19:17531136 synonymous SNV . 0 21 hm5C_associated_SNPs_49115 0 0 1 0 2 MVB12A chr19:17531220 5'GT 17531220 Upstream 85bp
chr18 29049253 29049253 1 + C T SKCM 29049253 + 29049233 29049273 41 CAGGTATGGCAGGCCGCACTCAGGGAGGCTGGGGCCTGCCG CAGGTATGGCAGGCCGCACTTAGGGAGGCTGGGGCCTGCCG Direct Loss 0.954850164639393 0 0.94856286 0.91545296 prediction 0.909700329278786 Functional Loss - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29049253 chr18:29049253 nonsynonymous SNV 0.034 0 21 hm5C_associated_SNPs_49118 0 0 0 0 1 DSG3 chr18:29049312 5'GT 29049312 Upstream 60bp
chr3 136708404 136708404 1 + C T UCEC 136708404 + 136708384 136708424 41 TGGAGGAGGGAGCCTGGTGCCGAGGTGAGACTCCAGCCTTG TGGAGGAGGGAGCCTGGTGCTGAGGTGAGACTCCAGCCTTG Direct Loss 0.954835899022723 0 0.9230541 0.9062861 prediction 0.909671798045445 Functional Loss - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136708404 chr3:136708404 synonymous SNV . 0 21 hm5C_associated_SNPs_49119 0 0 0 1 1 IL20RB chr3:136708407 5'GT 136708407 Upstream 4bp
chr8 66992750 66992750 1 + C T GBM 66992750 + 66992730 66992770 41 TCTATGTGTCCCCAGAGGATCTGGAGGAGCAGATCAAGTCT TCTATGTGTCCCCAGAGGATTTGGAGGAGCAGATCAAGTCT Direct Loss 0.954832282173903 0 0.8050928 0.7198942 prediction 0.909664564347805 Functional Loss - DNAJC5B ENSG00000147570 CDS Human protein_coding chr8:66992750 chr8:66992750 synonymous SNV . 0 21 hm5C_associated_SNPs_49120 0 0 0 0 1 DNAJC5B chr8:66992783 5'GT 66992783 Upstream 34bp
chr19 51631240 51631240 1 + C T LUSC 51631240 + 51631220 51631260 41 GGAGTGACTCAGGGGGTGGTCGGGGGAGCTGGAGCCACAGC GGAGTGACTCAGGGGGTGGTTGGGGGAGCTGGAGCCACAGC Direct Loss 0.954798464121636 0 0.95642686 0.9421202 prediction 0.909596928243271 Functional Loss - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51631240 chr19:51631240 synonymous SNV . 0 21 hm5C_associated_SNPs_49124 0 0 0 0 2 SIGLEC9 chr19:51631206 3'AG 51631206 Downstream 35bp
chr19 51631240 51631240 1 + C T LUSC 51631240 + 51631220 51631260 41 GGAGTGACTCAGGGGGTGGTCGGGGGAGCTGGAGCCACAGC GGAGTGACTCAGGGGGTGGTTGGGGGAGCTGGAGCCACAGC Direct Loss 0.954798464121636 0 0.95642686 0.9421202 prediction 0.909596928243271 Functional Loss - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51631240 chr19:51631240 synonymous SNV . 0 21 hm5C_associated_SNPs_49124 0 0 0 0 2 SIGLEC9 chr19:51631296 5'GT 51631296 Upstream 57bp
chr20 55209275 55209275 1 + C T UCEC 55209275 + 55209255 55209295 41 ATTGGGTTGAATCTTCCGGCCGGGAGGCGGAAAGCCGCTCA ATTGGGTTGAATCTTCCGGCTGGGAGGCGGAAAGCCGCTCA Direct Loss 0.95479105574939 0 0.40225273 0.2516232 prediction 0.90958211149878 Functional Loss - TFAP2C ENSG00000087510 CDS Human protein_coding chr20:55209275 chr20:55209275 synonymous SNV . 0 21 hm5C_associated_SNPs_49126 0 0 1 0 2 TFAP2C chr20:55209206 3'AG 55209206 Downstream 70bp
chr20 55209275 55209275 1 + C T UCEC 55209275 + 55209255 55209295 41 ATTGGGTTGAATCTTCCGGCCGGGAGGCGGAAAGCCGCTCA ATTGGGTTGAATCTTCCGGCTGGGAGGCGGAAAGCCGCTCA Direct Loss 0.95479105574939 0 0.40225273 0.2516232 prediction 0.90958211149878 Functional Loss - TFAP2C ENSG00000087510 CDS Human protein_coding chr20:55209275 chr20:55209275 synonymous SNV . 0 21 hm5C_associated_SNPs_49126 0 0 1 0 2 TFAP2C chr20:55209324 5'GT 55209324 Upstream 50bp
chr18 8786015 8786015 1 + C T ESCA 8786015 + 8785995 8786035 41 GCCTGCGCCTCCGAGCCGCGCGGGAGCTGCACCGCCGCGCA GCCTGCGCCTCCGAGCCGCGTGGGAGCTGCACCGCCGCGCA Direct Loss 0.954786747404478 0 0.9299259 0.9211334 prediction 0.909573494808956 Functional Loss - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8786015 chr18:8786015 nonsynonymous SNV 0.266 1 21 hm5C_associated_SNPs_49127 0 0 1 0 2 MTCL1 chr18:8785934 3'AG 8785934 Downstream 82bp
chr18 8786015 8786015 1 + C T ESCA 8786015 + 8785995 8786035 41 GCCTGCGCCTCCGAGCCGCGCGGGAGCTGCACCGCCGCGCA GCCTGCGCCTCCGAGCCGCGTGGGAGCTGCACCGCCGCGCA Direct Loss 0.954786747404478 0 0.9299259 0.9211334 prediction 0.909573494808956 Functional Loss - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8786015 chr18:8786015 nonsynonymous SNV 0.266 1 21 hm5C_associated_SNPs_49127 0 0 1 0 2 MTCL1 chr18:8786089 5'GT 8786089 Upstream 75bp
chr7 2565141 2565141 1 + C T BLCA 2565141 + 2565121 2565161 41 CACACGCGGGACGTCTACGTCGGCAAGCCCAGCCTGGACAG CACACGCGGGACGTCTACGTTGGCAAGCCCAGCCTGGACAG Direct Loss 0.954783364997484 0 0.87449586 0.7553154 prediction 0.909566729994968 Functional Loss - LFNG ENSG00000106003 CDS Human protein_coding chr7:2565141 chr7:2565141 synonymous SNV . 0 21 hm5C_associated_SNPs_49128 0 0 0 0 2 LFNG chr7:2565048 3'AG 2565048 Downstream 94bp
chr7 2565141 2565141 1 + C T BLCA 2565141 + 2565121 2565161 41 CACACGCGGGACGTCTACGTCGGCAAGCCCAGCCTGGACAG CACACGCGGGACGTCTACGTTGGCAAGCCCAGCCTGGACAG Direct Loss 0.954783364997484 0 0.87449586 0.7553154 prediction 0.909566729994968 Functional Loss - LFNG ENSG00000106003 CDS Human protein_coding chr7:2565141 chr7:2565141 synonymous SNV . 0 21 hm5C_associated_SNPs_49128 0 0 0 0 2 LFNG chr7:2565201 5'GT 2565201 Upstream 61bp
chr14 24773726 24773726 1 + C T rs558942777 24773726 + 24773706 24773746 41 ATGTGGCTCTGGCCTGTAGTCGCCATGGCAGCCGTGTGCTA ATGTGGCTCTGGCCTGTAGTTGCCATGGCAGCCGTGTGCTA Direct Loss 0.954770762829112 0 0.8126834 0.40844297 prediction 0.909541525658224 Functional Loss - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24773726 chr14:24773726 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_49131 0 0 1 0 2 NOP9 chr14:24773699 3'AG 24773699 Downstream 28bp
chr14 24773726 24773726 1 + C T rs558942777 24773726 + 24773706 24773746 41 ATGTGGCTCTGGCCTGTAGTCGCCATGGCAGCCGTGTGCTA ATGTGGCTCTGGCCTGTAGTTGCCATGGCAGCCGTGTGCTA Direct Loss 0.954770762829112 0 0.8126834 0.40844297 prediction 0.909541525658224 Functional Loss - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24773726 chr14:24773726 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_49131 0 0 1 0 2 NOP9 chr14:24773804 5'GT 24773804 Upstream 79bp
chr20 44333159 44333159 1 + C T UCEC 44333159 + 44333139 44333179 41 TGTACAATGCAGGAAGATTGCGAGAAAGGATTTCAGTGCTG TGTACAATGCAGGAAGATTGTGAGAAAGGATTTCAGTGCTG Direct Loss 0.95476813038226 0 0.8609636 0.3758957 prediction 0.90953626076452 Functional Loss - WFDC10B;WFDC13 ENSG00000168634;ENSG00000182931 CDS Human protein_coding chr20:44333159 chr20:44333159 nonsynonymous SNV 0.056 1 21 hm5C_associated_SNPs_49132 0 0 0 0 1 WFDC13 chr20:44333233 5'GT 44333233 Upstream 75bp
chr16 3187610 3187610 1 + C T STAD 3187610 + 3187590 3187630 41 CTGGGTGCGTGAGCAGCACCCGGGAAGCGGTGAGGAGGCTG CTGGGTGCGTGAGCAGCACCTGGGAAGCGGTGAGGAGGCTG Direct Loss 0.95475298264642 0 0.88978624 0.8257067 prediction 0.909505965292841 Functional Loss - ZNF213 ENSG00000085644 CDS Human protein_coding chr16:3187610 chr16:3187610 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_49134 0 0 0 0 1 ZNF213 chr16:3187680 5'GT 3187680 Upstream 71bp
chr19 18700384 18700384 1 + C T BLCA 18700384 + 18700364 18700404 41 CCAGGCCTTCGCCGCCGCCTCGCGGGAGGTGCTGGCGGTGG CCAGGCCTTCGCCGCCGCCTTGCGGGAGGTGCTGGCGGTGG Direct Loss 0.954751919588555 0 0.60516876 0.4628354 prediction 0.90950383917711 Functional Loss - C19orf60 ENSG00000006015 CDS Human protein_coding chr19:18700384 chr19:18700384 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_49135 0 0 1 0 1 C19orf60 chr19:18700289 3'AG 18700289 Downstream 96bp
chr5 132086633 132086633 1 + C T COAD 132086633 + 132086613 132086653 41 TGAGGATGGAGCTGGCTATTCTGGACAGACTGCACTGGGAC TGAGGATGGAGCTGGCTATTTTGGACAGACTGCACTGGGAC Direct Loss 0.954747204575339 0 0.5715482 0.646273 prediction 0.909494409150678 Functional Loss - CCNI2 ENSG00000205089 CDS Human protein_coding chr5:132086633 chr5:132086633 synonymous SNV . 0 21 hm5C_associated_SNPs_49136 0 0 0 0 2 CCNI2 chr5:132086549 3'AG 132086549 Downstream 85bp
chr5 132086633 132086633 1 + C T COAD 132086633 + 132086613 132086653 41 TGAGGATGGAGCTGGCTATTCTGGACAGACTGCACTGGGAC TGAGGATGGAGCTGGCTATTTTGGACAGACTGCACTGGGAC Direct Loss 0.954747204575339 0 0.5715482 0.646273 prediction 0.909494409150678 Functional Loss - CCNI2 ENSG00000205089 CDS Human protein_coding chr5:132086633 chr5:132086633 synonymous SNV . 0 21 hm5C_associated_SNPs_49136 0 0 0 0 2 CCNI2 chr5:132086689 5'GT 132086689 Upstream 57bp
chr1 75602868 75602868 1 + C T LUAD 75602868 + 75602848 75602888 41 TCCTCGCCCCGGTCCATGGCCTCGGGCTCCGGCTGCCCTCC TCCTCGCCCCGGTCCATGGCTTCGGGCTCCGGCTGCCCTCC Direct Loss 0.954720246657347 0 0.26653564 0.24213332 prediction 0.909440493314693 Functional Loss - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75602868 chr1:75602868 synonymous SNV . 0 21 hm5C_associated_SNPs_49138 0 0 0 0 3 LHX8 chr1:75602785 3'AG 75602785 Downstream 84bp
chr1 75602868 75602868 1 + C T LUAD 75602868 + 75602848 75602888 41 TCCTCGCCCCGGTCCATGGCCTCGGGCTCCGGCTGCCCTCC TCCTCGCCCCGGTCCATGGCTTCGGGCTCCGGCTGCCCTCC Direct Loss 0.954720246657347 0 0.26653564 0.24213332 prediction 0.909440493314693 Functional Loss - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75602868 chr1:75602868 synonymous SNV . 0 21 hm5C_associated_SNPs_49138 0 0 0 0 3 LHX8 chr1:75602790 3'AG 75602790 Downstream 79bp
chr1 75602868 75602868 1 + C T LUAD 75602868 + 75602848 75602888 41 TCCTCGCCCCGGTCCATGGCCTCGGGCTCCGGCTGCCCTCC TCCTCGCCCCGGTCCATGGCTTCGGGCTCCGGCTGCCCTCC Direct Loss 0.954720246657347 0 0.26653564 0.24213332 prediction 0.909440493314693 Functional Loss - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75602868 chr1:75602868 synonymous SNV . 0 21 hm5C_associated_SNPs_49138 0 0 0 0 3 LHX8 chr1:75602946 5'GT 75602946 Upstream 79bp
chr17 38240916 38240916 1 + C T UCEC 38240916 + 38240896 38240936 41 GTAAGCTGATTGAGCAGAACCGGGAGCGGCGGCGGAAGGAG GTAAGCTGATTGAGCAGAACTGGGAGCGGCGGCGGAAGGAG Direct Loss 0.954716799164554 0 0.8949206 0.7757177 prediction 0.909433598329107 Functional Loss - THRA ENSG00000126351 CDS Human protein_coding chr17:38240916 chr17:38240916 nonsynonymous SNV 0.995 5 21 hm5C_associated_SNPs_49141 0 0 1 0 1 THRA chr17:38240863 3'AG 38240863 Downstream 54bp
chr1 10471519 10471519 1 + C T COAD 10471519 + 10471499 10471539 41 TTCGTGAAGATGGTGCACAACGGGATAGAGTATGGGGACAT TTCGTGAAGATGGTGCACAATGGGATAGAGTATGGGGACAT Direct Loss 0.954683902618828 0 0.51110625 0.34568444 prediction 0.909367805237657 Functional Loss - PGD ENSG00000142657 CDS Human protein_coding chr1:10471519 chr1:10471519 synonymous SNV . 0 21 hm5C_associated_SNPs_49147 0 0 1 0 2 PGD chr1:10471475 3'AG 10471475 Downstream 45bp
chr1 10471519 10471519 1 + C T COAD 10471519 + 10471499 10471539 41 TTCGTGAAGATGGTGCACAACGGGATAGAGTATGGGGACAT TTCGTGAAGATGGTGCACAATGGGATAGAGTATGGGGACAT Direct Loss 0.954683902618828 0 0.51110625 0.34568444 prediction 0.909367805237657 Functional Loss - PGD ENSG00000142657 CDS Human protein_coding chr1:10471519 chr1:10471519 synonymous SNV . 0 21 hm5C_associated_SNPs_49147 0 0 1 0 2 PGD chr1:10471609 5'GT 10471609 Upstream 91bp
chr22 40800334 40800334 1 + C T KIRP 40800334 + 40800314 40800354 41 GGCTGCGGTGGCAGGCCCACCTGGAGTTCACCCATAACCAC GGCTGCGGTGGCAGGCCCACTTGGAGTTCACCCATAACCAC Direct Loss 0.954681984241521 0 0.40253395 0.6872195 prediction 0.909363968483041 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40800334 chr22:40800334 synonymous SNV . 0 21 hm5C_associated_SNPs_49148 0 0 1 0 2 SGSM3 chr22:40800251 3'AG 40800251 Downstream 84bp
chr22 40800334 40800334 1 + C T KIRP 40800334 + 40800314 40800354 41 GGCTGCGGTGGCAGGCCCACCTGGAGTTCACCCATAACCAC GGCTGCGGTGGCAGGCCCACTTGGAGTTCACCCATAACCAC Direct Loss 0.954681984241521 0 0.40253395 0.6872195 prediction 0.909363968483041 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40800334 chr22:40800334 synonymous SNV . 0 21 hm5C_associated_SNPs_49148 0 0 1 0 2 SGSM3 chr22:40800313 3'AG 40800313 Downstream 22bp
chr16 85948094 85948094 1 + C T COAD 85948094 + 85948074 85948114 41 TGCAGGCGTGCCGCTGGTGACGGGGTACACCACCTACGACG TGCAGGCGTGCCGCTGGTGATGGGGTACACCACCTACGACG Direct Loss 0.954624842416116 0 0.93813753 0.8978892 prediction 0.909249684832232 Functional Loss - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85948094 chr16:85948094 nonsynonymous SNV 0.086 1 21 hm5C_associated_SNPs_49150 0 0 0 0 2 IRF8 chr16:85948079 3'AG 85948079 Downstream 16bp
chr16 85948094 85948094 1 + C T COAD 85948094 + 85948074 85948114 41 TGCAGGCGTGCCGCTGGTGACGGGGTACACCACCTACGACG TGCAGGCGTGCCGCTGGTGATGGGGTACACCACCTACGACG Direct Loss 0.954624842416116 0 0.93813753 0.8978892 prediction 0.909249684832232 Functional Loss - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85948094 chr16:85948094 nonsynonymous SNV 0.086 1 21 hm5C_associated_SNPs_49150 0 0 0 0 2 IRF8 chr16:85948126 5'GT 85948126 Upstream 33bp
chr7 138487711 138487711 1 + C T STAD 138487711 + 138487691 138487731 41 GGACGAGTACGGCTGGATCGCGGCAGCTGTTGGCTGGAGCC GGACGAGTACGGCTGGATCGTGGCAGCTGTTGGCTGGAGCC Direct Loss 0.95458104475363 0 0.8940798 0.8858162 prediction 0.90916208950726 Functional Loss - TMEM213 ENSG00000214128 CDS Human protein_coding chr7:138487711 chr7:138487711 nonsynonymous SNV 0.981 2 21 hm5C_associated_SNPs_49155 0 0 0 0 1 TMEM213 chr7:138487645 3'AG 138487645 Downstream 67bp
chr19 7711139 7711139 1 + C T COAD 7711139 + 7711119 7711159 41 CCTGCCCTGCCTGTAGGGCTCGGGGACCTCCAGCCGGCTGG CCTGCCCTGCCTGTAGGGCTTGGGGACCTCCAGCCGGCTGG Direct Loss 0.954563744309038 0 0.9452714 0.9128723 prediction 0.909127488618076 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7711139 chr19:7711139 nonsynonymous SNV 0.042 0 21 hm5C_associated_SNPs_49157 0 0 1 0 2 STXBP2 chr19:7711135 3'AG 7711135 Downstream 5bp
chr19 7711139 7711139 1 + C T COAD 7711139 + 7711119 7711159 41 CCTGCCCTGCCTGTAGGGCTCGGGGACCTCCAGCCGGCTGG CCTGCCCTGCCTGTAGGGCTTGGGGACCTCCAGCCGGCTGG Direct Loss 0.954563744309038 0 0.9452714 0.9128723 prediction 0.909127488618076 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7711139 chr19:7711139 nonsynonymous SNV 0.042 0 21 hm5C_associated_SNPs_49157 0 0 1 0 2 STXBP2 chr19:7711230 5'GT 7711230 Upstream 92bp
chr19 50028001 50028001 1 + C T COAD 50028001 + 50027981 50028021 41 CTGCTGCATTGTGCAGCACGCGGGGCTGGCGCAGCCCCTCA CTGCTGCATTGTGCAGCACGTGGGGCTGGCGCAGCCCCTCA Direct Loss 0.954541347230819 0 0.9146395 0.89453447 prediction 0.909082694461639 Functional Loss - FCGRT ENSG00000104870 CDS Human protein_coding chr19:50028001 chr19:50028001 nonsynonymous SNV 0.333 1 21 hm5C_associated_SNPs_49158 0 0 1 0 1 FCGRT chr19:50028033 5'GT 50028033 Upstream 33bp
chr2 39934241 39934241 1 + C T HNSC 39934241 + 39934221 39934261 41 ATGGCCGTAGCCGTCCTTCTCTGCGGCTGCATTGTGGCCAC ATGGCCGTAGCCGTCCTTCTTTGCGGCTGCATTGTGGCCAC Direct Loss 0.954507700871843 0 0.9067687 0.57284665 prediction 0.909015401743685 Functional Loss - TMEM178A ENSG00000152154 CDS Human protein_coding chr2:39934241 chr2:39934241 synonymous SNV . 0 21 hm5C_associated_SNPs_49160 0 0 0 0 2 TMEM178A chr2:39934189 3'AG 39934189 Downstream 53bp
chr2 39934241 39934241 1 + C T HNSC 39934241 + 39934221 39934261 41 ATGGCCGTAGCCGTCCTTCTCTGCGGCTGCATTGTGGCCAC ATGGCCGTAGCCGTCCTTCTTTGCGGCTGCATTGTGGCCAC Direct Loss 0.954507700871843 0 0.9067687 0.57284665 prediction 0.909015401743685 Functional Loss - TMEM178A ENSG00000152154 CDS Human protein_coding chr2:39934241 chr2:39934241 synonymous SNV . 0 21 hm5C_associated_SNPs_49160 0 0 0 0 2 TMEM178A chr2:39934326 5'GT 39934326 Upstream 86bp
chr11 120097696 120097696 1 + C T UCEC 120097696 + 120097676 120097716 41 AGGAGGATGTCCGGTTCTGGCTGGAGCAAGGTCAGCTGGGA AGGAGGATGTCCGGTTCTGGTTGGAGCAAGGTCAGCTGGGA Direct Loss 0.954500278573324 0 0.553793 0.5886672 prediction 0.909000557146649 Functional Loss - OAF ENSG00000184232 CDS Human protein_coding chr11:120097696 chr11:120097696 synonymous SNV . 0 21 hm5C_associated_SNPs_49161 0 0 1 0 1 OAF chr11:120097705 5'GT 120097705 Upstream 10bp
chr1 154246309 154246309 1 + C T HNSC 154246309 + 154246289 154246329 41 TACGGGAGGGACAGACACTTCGGGACTCAATGCTTAAGTAT TACGGGAGGGACAGACACTTTGGGACTCAATGCTTAAGTAT Direct Loss 0.954483257232931 0 0.7559672 0.3900381 prediction 0.908966514465861 Functional Loss - HAX1 ENSG00000143575 CDS Human protein_coding chr1:154246309 chr1:154246309 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_49163 0 0 1 0 2 HAX1 chr1:154246226 3'AG 154246226 Downstream 84bp
chr1 154246309 154246309 1 + C T HNSC 154246309 + 154246289 154246329 41 TACGGGAGGGACAGACACTTCGGGACTCAATGCTTAAGTAT TACGGGAGGGACAGACACTTTGGGACTCAATGCTTAAGTAT Direct Loss 0.954483257232931 0 0.7559672 0.3900381 prediction 0.908966514465861 Functional Loss - HAX1 ENSG00000143575 CDS Human protein_coding chr1:154246309 chr1:154246309 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_49163 0 0 1 0 2 HAX1 chr1:154246250 3'AG 154246250 Downstream 60bp
chrX 54837536 54837536 1 + C T UCEC 54837536 + 54837516 54837556 41 AGCCTGAAGCACCACCACCTCGGGATGTGGCCCTTTTGCAA AGCCTGAAGCACCACCACCTTGGGATGTGGCCCTTTTGCAA Direct Loss 0.954423012615012 0 0.8981379 0.67797494 prediction 0.908846025230023 Functional Loss - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54837536 chrX:54837536 nonsynonymous SNV 0.945 3 21 hm5C_associated_SNPs_49166 0 0 1 0 1 MAGED2 chrX:54837479 3'AG 54837479 Downstream 58bp
chr1 1848604 1848604 1 + C T UCEC 1848604 + 1848584 1848624 41 AGAGTTTGTGGCCATGATGACGGGGGAGTCCTTCAAGCTGA AGAGTTTGTGGCCATGATGATGGGGGAGTCCTTCAAGCTGA Direct Loss 0.954416960817801 0 0.91686356 0.8166499 prediction 0.908833921635602 Functional Loss - CALML6 ENSG00000169885 CDS Human protein_coding chr1:1848604 chr1:1848604 nonsynonymous SNV 0.989 2 21 hm5C_associated_SNPs_49167 0 0 0 0 1 CALML6 chr1:1848513 3'AG 1848513 Downstream 92bp
chr19 32971419 32971419 1 + C T PAAD 32971419 + 32971399 32971439 41 GCTACGAGCGGAGGCACCGCCGGGGCTGCCGACTCCGGGAC GCTACGAGCGGAGGCACCGCTGGGGCTGCCGACTCCGGGAC Direct Loss 0.954415570173377 0 0.9319376 0.9039954 prediction 0.908831140346755 Functional Loss - DPY19L3 ENSG00000178904 CDS Human protein_coding chr19:32971419 chr19:32971419 nonsynonymous SNV 0.862 4 21 hm5C_associated_SNPs_49168 0 0 1 0 1 DPY19L3 chr19:32971463 5'GT 32971463 Upstream 45bp
chr5 33461093 33461093 1 + C A OV 33461093 + 33461073 33461113 41 ACTTCATAGGAACGAGCTGTCTGGAGCACTCACAGGACTCA ACTTCATAGGAACGAGCTGTATGGAGCACTCACAGGACTCA Direct Loss 0.954409830400828 0 0.3296374 0.21648607 prediction 0.908819660801657 Functional Loss - TARS ENSG00000113407 CDS Human protein_coding chr5:33461093 chr5:33461093 nonsynonymous SNV 0.937 4 21 hm5C_associated_SNPs_49169 0 0 1 0 2 TARS chr5:33461007 3'AG 33461007 Downstream 87bp
chr5 33461093 33461093 1 + C A OV 33461093 + 33461073 33461113 41 ACTTCATAGGAACGAGCTGTCTGGAGCACTCACAGGACTCA ACTTCATAGGAACGAGCTGTATGGAGCACTCACAGGACTCA Direct Loss 0.954409830400828 0 0.3296374 0.21648607 prediction 0.908819660801657 Functional Loss - TARS ENSG00000113407 CDS Human protein_coding chr5:33461093 chr5:33461093 nonsynonymous SNV 0.937 4 21 hm5C_associated_SNPs_49169 0 0 1 0 2 TARS chr5:33461169 5'GT 33461169 Upstream 77bp
chr9 124072978 124072978 1 + C T UCEC 124072978 + 124072958 124072998 41 ACAGAAAGGAGGTGTGGCATCAGGATTCAAGCACGTGGTAC ACAGAAAGGAGGTGTGGCATTAGGATTCAAGCACGTGGTAC Direct Loss 0.954401905086673 0 0.9044943 0.8687196 prediction 0.908803810173347 Functional Loss - GSN ENSG00000148180 CDS Human protein_coding chr9:124072978 chr9:124072978 nonsynonymous SNV 0.973 4 21 hm5C_associated_SNPs_49170 0 0 1 0 1 GSN chr9:124072962 3'AG 124072962 Downstream 17bp
chr16 5083833 5083833 1 - G A rs74952829 5083833 - 5083813 5083853 41 AGCGTCCGGCGGCCTCGACTCGGGGTGAGTGCAGCTCCCTG AGCGTCCGGCGGCCTCGACTTGGGGTGAGTGCAGCTCCCTG Direct Loss 0.954380227223502 0 0.9522877 0.9137078 prediction 0.908760454447003 Functional Loss - NAGPA ENSG00000103174 CDS Human protein_coding chr16:5083833 chr16:5083833 nonsynonymous SNV 0.248 0 21 hm5C_associated_SNPs_49171 0 0 1 0 1 NAGPA chr16:5083830 5'GT 5083830 Upstream 4bp
chr17 8167548 8167548 1 + C T SKCM 8167548 + 8167528 8167568 41 AGATAGTGCTGGTGGACGATCGGGAGTGTCCTGTCAGAAGA AGATAGTGCTGGTGGACGATTGGGAGTGTCCTGTCAGAAGA Direct Loss 0.95437402994805 0 0.9264729 0.69790304 prediction 0.908748059896099 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8167548 chr17:8167548 nonsynonymous SNV 0.752 3 21 hm5C_associated_SNPs_49172 0 0 1 0 1 PFAS chr17:8167530 3'AG 8167530 Downstream 19bp
chr16 68289235 68289235 1 + C T UCEC 68289235 + 68289215 68289255 41 TTGTGGGCTGGGGCTACACACGGGGTGAGGATGTCCGAGGG TTGTGGGCTGGGGCTACACATGGGGTGAGGATGTCCGAGGG Direct Loss 0.954366851062743 0 0.9572647 0.93131214 prediction 0.908733702125487 Functional Loss - PLA2G15 ENSG00000103066 CDS Human protein_coding chr16:68289235 chr16:68289235 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_49174 0 0 0 0 2 PLA2G15 chr16:68289185 3'AG 68289185 Downstream 51bp
chr16 68289235 68289235 1 + C T UCEC 68289235 + 68289215 68289255 41 TTGTGGGCTGGGGCTACACACGGGGTGAGGATGTCCGAGGG TTGTGGGCTGGGGCTACACATGGGGTGAGGATGTCCGAGGG Direct Loss 0.954366851062743 0 0.9572647 0.93131214 prediction 0.908733702125487 Functional Loss - PLA2G15 ENSG00000103066 CDS Human protein_coding chr16:68289235 chr16:68289235 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_49174 0 0 0 0 2 PLA2G15 chr16:68289283 5'GT 68289283 Upstream 49bp
chr1 165624631 165624631 1 + C A UCEC 165624631 + 165624611 165624651 41 GCAAGCGTAGTCGAGGAGCCCTGGGGTCCATCGCCCTCCTG GCAAGCGTAGTCGAGGAGCCATGGGGTCCATCGCCCTCCTG Direct Loss 0.954346113958062 0 0.9171835 0.9091981 prediction 0.908692227916124 Functional Loss - MGST3 ENSG00000143198 CDS Human protein_coding chr1:165624631 chr1:165624631 nonsynonymous SNV 0.993 1 21 hm5C_associated_SNPs_49177 0 0 1 0 1 MGST3 chr1:165624605 3'AG 165624605 Downstream 27bp
chr6 160218495 160218495 1 + C T UCEC 160218495 + 160218475 160218515 41 GGCACAGAGATGCTTAGAGGCGGGAATCAACTTCATGGTCT GGCACAGAGATGCTTAGAGGTGGGAATCAACTTCATGGTCT Direct Loss 0.954320842593123 0 0.8593527 0.11414391 prediction 0.908641685186245 Functional Loss - MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160218495 chr6:160218495 nonsynonymous SNV 0.960 4 21 hm5C_associated_SNPs_49178 0 0 1 0 1 MRPL18 chr6:160218550 5'GT 160218550 Upstream 56bp
chr2 119739044 119739044 1 + C A CHOL 119739044 + 119739024 119739064 41 TCATGGGGCCTCCTGGAGCCCAGGGGAGTAAAGGTGACTTC TCATGGGGCCTCCTGGAGCCAAGGGGAGTAAAGGTGACTTC Direct Loss 0.954264976268796 0 0.90067226 0.90076923 prediction 0.908529952537592 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119739044 chr2:119739044 nonsynonymous SNV 0.976 1 21 hm5C_associated_SNPs_49182 0 0 0 0 2 MARCO chr2:119738985 3'AG 119738985 Downstream 60bp
chr2 119739044 119739044 1 + C A CHOL 119739044 + 119739024 119739064 41 TCATGGGGCCTCCTGGAGCCCAGGGGAGTAAAGGTGACTTC TCATGGGGCCTCCTGGAGCCAAGGGGAGTAAAGGTGACTTC Direct Loss 0.954264976268796 0 0.90067226 0.90076923 prediction 0.908529952537592 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119739044 chr2:119739044 nonsynonymous SNV 0.976 1 21 hm5C_associated_SNPs_49182 0 0 0 0 2 MARCO chr2:119739083 5'GT 119739083 Upstream 40bp
chr19 17638174 17638174 1 + C T rs201383126 17638174 + 17638154 17638194 41 GTGGGCGGCCTTCGAGCCCTCTGGACAAGCAGCAGCGGCAG GTGGGCGGCCTTCGAGCCCTTTGGACAAGCAGCAGCGGCAG Direct Loss 0.954260265264906 0 0.7188091 0.61507714 prediction 0.908520530529811 Functional Loss - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17638174 chr19:17638174 synonymous SNV . 0 21 hm5C_associated_SNPs_49184 0 0 0 0 1 FAM129C chr19:17638204 5'GT 17638204 Upstream 31bp
chr3 179298935 179298935 1 + C A HNSC 179298935 + 179298915 179298955 41 TCTTTTGTTGTAGGGGTTATCAGGAAACACAATGTTAGGAG TCTTTTGTTGTAGGGGTTATAAGGAAACACAATGTTAGGAG Direct Loss 0.954247047397211 0 0.9256835 0.34254783 prediction 0.908494094794423 Functional Loss - ACTL6A ENSG00000136518 CDS Human protein_coding chr3:179298935 chr3:179298935 stopgain 0.734 1 21 hm5C_associated_SNPs_49187 0 0 1 0 2 ACTL6A chr3:179298928 3'AG 179298928 Downstream 8bp
chr3 179298935 179298935 1 + C A HNSC 179298935 + 179298915 179298955 41 TCTTTTGTTGTAGGGGTTATCAGGAAACACAATGTTAGGAG TCTTTTGTTGTAGGGGTTATAAGGAAACACAATGTTAGGAG Direct Loss 0.954247047397211 0 0.9256835 0.34254783 prediction 0.908494094794423 Functional Loss - ACTL6A ENSG00000136518 CDS Human protein_coding chr3:179298935 chr3:179298935 stopgain 0.734 1 21 hm5C_associated_SNPs_49187 0 0 1 0 2 ACTL6A chr3:179299008 5'GT 179299008 Upstream 74bp
chr2 121104187 121104187 1 + C T LUAD 121104187 + 121104167 121104207 41 GACGGCCAGGAGCGCGTTTCCGAAATCATCAGCTTCGCCGA GACGGCCAGGAGCGCGTTTCTGAAATCATCAGCTTCGCCGA Direct Loss 0.95417763018183 0 0.87037826 0.7066058 prediction 0.90835526036366 Functional Loss - INHBB ENSG00000163083 CDS Human protein_coding chr2:121104187 chr2:121104187 synonymous SNV . 0 21 hm5C_associated_SNPs_49193 0 0 0 0 1 INHBB chr2:121104212 5'GT 121104212 Upstream 26bp
chr1 20005098 20005098 1 + C T PCPG 20005098 + 20005078 20005118 41 CCAGGGGTGGAGTCTGCTGACAGCAGGCGTCTAGCCACGAA CCAGGGGTGGAGTCTGCTGATAGCAGGCGTCTAGCCACGAA Direct Loss 0.954175617886691 0 0.2614057 0.18730626 prediction 0.908351235773383 Functional Loss - HTR6 ENSG00000158748 CDS Human protein_coding chr1:20005098 chr1:20005098 synonymous SNV . 0 21 hm5C_associated_SNPs_49195 0 0 0 0 1 HTR6 chr1:20005060 3'AG 20005060 Downstream 39bp
chr16 2867279 2867279 1 + C T STAD 2867279 + 2867259 2867299 41 GAGAGGAGGCCATGGGCGCGCGCGGGGCGCTGCTGCTGGCG GAGAGGAGGCCATGGGCGCGTGCGGGGCGCTGCTGCTGGCG Direct Loss 0.95412849013704 0 0.8856368 0.8624848 prediction 0.908256980274079 Functional Loss - PRSS21 ENSG00000007038 CDS Human protein_coding chr16:2867279 chr16:2867279 nonsynonymous SNV 0.000 3 21 hm5C_associated_SNPs_49201 0 0 1 0 1 PRSS21 chr16:2867333 5'GT 2867333 Upstream 55bp
chr6 34741226 34741226 1 + C A UCEC 34741226 + 34741206 34741246 41 TTTGTTTTGTCCTGCAGCTCCTGGAATGAGGCCGCCCATGG TTTGTTTTGTCCTGCAGCTCATGGAATGAGGCCGCCCATGG Direct Loss 0.954120859849744 0 0.40960467 0.5515157 prediction 0.908241719699487 Functional Loss - SNRPC ENSG00000124562 CDS Human protein_coding chr6:34741226 chr6:34741226 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_49203 0 0 1 0 1 SNRPC chr6:34741223 3'AG 34741223 Downstream 4bp
chr1 156900370 156900370 1 + C T UCEC 156900370 + 156900350 156900390 41 AGGGCAAAAGGGATCAAGATCGGGAGCAGAGAGAAGCGCAG AGGGCAAAAGGGATCAAGATTGGGAGCAGAGAGAAGCGCAG Direct Loss 0.954104062524568 0 0.9285269 0.8993654 prediction 0.908208125049135 Functional Loss - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156900370 chr1:156900370 synonymous SNV . 0 21 hm5C_associated_SNPs_49205 0 0 0 0 2 LRRC71 chr1:156900321 3'AG 156900321 Downstream 50bp
chr1 156900370 156900370 1 + C T UCEC 156900370 + 156900350 156900390 41 AGGGCAAAAGGGATCAAGATCGGGAGCAGAGAGAAGCGCAG AGGGCAAAAGGGATCAAGATTGGGAGCAGAGAGAAGCGCAG Direct Loss 0.954104062524568 0 0.9285269 0.8993654 prediction 0.908208125049135 Functional Loss - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156900370 chr1:156900370 synonymous SNV . 0 21 hm5C_associated_SNPs_49205 0 0 0 0 2 LRRC71 chr1:156900409 5'GT 156900409 Upstream 40bp
chr17 55752363 55752363 1 + C G BLCA 55752363 + 55752343 55752383 41 GGCGCGGCCCGGAGGCTTCCCGGGGGCCAACAGCCCAGGAC GGCGCGGCCCGGAGGCTTCCGGGGGGCCAACAGCCCAGGAC Direct Loss 0.95407611439294 0 0.9379586 0.9403906 prediction 0.908152228785879 Functional Loss - MSI2 ENSG00000153944 CDS Human protein_coding chr17:55752363 chr17:55752363 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_49208 0 0 1 0 2 MSI2 chr17:55752279 3'AG 55752279 Downstream 85bp
chr17 55752363 55752363 1 + C G BLCA 55752363 + 55752343 55752383 41 GGCGCGGCCCGGAGGCTTCCCGGGGGCCAACAGCCCAGGAC GGCGCGGCCCGGAGGCTTCCGGGGGGCCAACAGCCCAGGAC Direct Loss 0.95407611439294 0 0.9379586 0.9403906 prediction 0.908152228785879 Functional Loss - MSI2 ENSG00000153944 CDS Human protein_coding chr17:55752363 chr17:55752363 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_49208 0 0 1 0 2 MSI2 chr17:55752333 3'AG 55752333 Downstream 31bp
chr9 139840170 139840170 1 + C A UCEC 139840170 + 139840150 139840190 41 ACCGGGCCGAGGCCACCACACTGCATGTGGCTCCCCAGGGC ACCGGGCCGAGGCCACCACAATGCATGTGGCTCCCCAGGGC Direct Loss 0.954055565053166 0 0.2397613 0.18816417 prediction 0.908111130106332 Functional Loss - C8G ENSG00000176919 CDS Human protein_coding chr9:139840170 chr9:139840170 nonsynonymous SNV 0.052 0 21 hm5C_associated_SNPs_49211 0 0 1 0 2 C8G chr9:139840086 3'AG 139840086 Downstream 85bp
chr9 139840170 139840170 1 + C A UCEC 139840170 + 139840150 139840190 41 ACCGGGCCGAGGCCACCACACTGCATGTGGCTCCCCAGGGC ACCGGGCCGAGGCCACCACAATGCATGTGGCTCCCCAGGGC Direct Loss 0.954055565053166 0 0.2397613 0.18816417 prediction 0.908111130106332 Functional Loss - C8G ENSG00000176919 CDS Human protein_coding chr9:139840170 chr9:139840170 nonsynonymous SNV 0.052 0 21 hm5C_associated_SNPs_49211 0 0 1 0 2 C8G chr9:139840222 5'GT 139840222 Upstream 53bp
chr15 65134149 65134149 1 + C G rs187639034 65134149 + 65134129 65134169 41 GCCGCCTGGCCGGGCGTAGACGCGGTGGCAGAGCCCGCGCG GCCGCCTGGCCGGGCGTAGAGGCGGTGGCAGAGCCCGCGCG Direct Loss 0.954044516633369 0 0.91390437 0.9122461 prediction 0.908089033266738 Functional Loss - PLEKHO2 ENSG00000241839;ENSG00000249240 UTR5 Human other chr15:65134149 chr15:65134149 . . 0 21 hm5C_associated_SNPs_49214 0 0 1 0 1 PLEKHO2 chr15:65134227 5'GT 65134227 Upstream 79bp
chr5 54405888 54405888 1 + C T UCEC 54405888 + 54405868 54405908 41 TGTTGTGCGAGGGTGTTTTCCGAGGGGTCACTTCCTTTGGC TGTTGTGCGAGGGTGTTTTCTGAGGGGTCACTTCCTTTGGC Direct Loss 0.954037793604024 0 0.95930207 0.9438047 prediction 0.908075587208048 Functional Loss - GZMA ENSG00000145649 CDS Human protein_coding chr5:54405888 chr5:54405888 stopgain 0.015 0 21 hm5C_associated_SNPs_49216 0 0 0 0 1 GZMA chr5:54405849 3'AG 54405849 Downstream 40bp
chr8 22438966 22438966 1 + C T UCEC 22438966 + 22438946 22438986 41 GTGGCCATCAACGGGGAAAGCGCGGAGGGCATGCTGCATGC GTGGCCATCAACGGGGAAAGTGCGGAGGGCATGCTGCATGC Direct Loss 0.954016883062022 0 0.90171516 0.84828764 prediction 0.908033766124045 Functional Loss - PDLIM2 ENSG00000120913 CDS Human protein_coding chr8:22438966 chr8:22438966 synonymous SNV . 0 21 hm5C_associated_SNPs_49219 0 0 1 0 2 PDLIM2 chr8:22438892 3'AG 22438892 Downstream 75bp
chr8 22438966 22438966 1 + C T UCEC 22438966 + 22438946 22438986 41 GTGGCCATCAACGGGGAAAGCGCGGAGGGCATGCTGCATGC GTGGCCATCAACGGGGAAAGTGCGGAGGGCATGCTGCATGC Direct Loss 0.954016883062022 0 0.90171516 0.84828764 prediction 0.908033766124045 Functional Loss - PDLIM2 ENSG00000120913 CDS Human protein_coding chr8:22438966 chr8:22438966 synonymous SNV . 0 21 hm5C_associated_SNPs_49219 0 0 1 0 2 PDLIM2 chr8:22439043 5'GT 22439043 Upstream 78bp
chr10 81372171 81372171 1 + C T UCEC 81372171 + 81372151 81372191 41 GGAGAGAAGGGGGAGCCTGGCGAGAGGGGCCCTCCAGGTGA GGAGAGAAGGGGGAGCCTGGTGAGAGGGGCCCTCCAGGTGA Direct Loss 0.95400911337728 0 0.8983475 0.8482797 prediction 0.90801822675456 Functional Loss - SFTPA1 ENSG00000122852 CDS Human protein_coding chr10:81372171 chr10:81372171 synonymous SNV . 0 21 hm5C_associated_SNPs_49222 0 0 0 0 2 SFTPA1 chr10:81372128 3'AG 81372128 Downstream 44bp
chr10 81372171 81372171 1 + C T UCEC 81372171 + 81372151 81372191 41 GGAGAGAAGGGGGAGCCTGGCGAGAGGGGCCCTCCAGGTGA GGAGAGAAGGGGGAGCCTGGTGAGAGGGGCCCTCCAGGTGA Direct Loss 0.95400911337728 0 0.8983475 0.8482797 prediction 0.90801822675456 Functional Loss - SFTPA1 ENSG00000122852 CDS Human protein_coding chr10:81372171 chr10:81372171 synonymous SNV . 0 21 hm5C_associated_SNPs_49222 0 0 0 0 2 SFTPA1 chr10:81372187 5'GT 81372187 Upstream 17bp
chr17 59533881 59533881 1 + C T CESC 59533881 + 59533861 59533901 41 GATAAGGGCCTGTCCGAGAGCGAGGAGGCCTTCCGGGCCCC GATAAGGGCCTGTCCGAGAGTGAGGAGGCCTTCCGGGCCCC Direct Loss 0.954004727344195 0 0.89843714 0.88793135 prediction 0.908009454688391 Functional Loss - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59533881 chr17:59533881 synonymous SNV . 0 21 hm5C_associated_SNPs_49223 0 0 0 0 1 TBX4 chr17:59533849 3'AG 59533849 Downstream 33bp
chr1 11887200 11887200 1 + C T LUSC 11887200 + 11887180 11887220 41 GCTGGAGTTGCTGCAGCTTTCGGGGCGCCAATCGGGGGTAC GCTGGAGTTGCTGCAGCTTTTGGGGCGCCAATCGGGGGTAC Direct Loss 0.95399788051194 0 0.93585443 0.8892479 prediction 0.907995761023881 Functional Loss - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11887200 chr1:11887200 synonymous SNV . 0 21 hm5C_associated_SNPs_49227 0 0 1 0 3 CLCN6 chr1:11887146 3'AG 11887146 Downstream 55bp
chr1 11887200 11887200 1 + C T LUSC 11887200 + 11887180 11887220 41 GCTGGAGTTGCTGCAGCTTTCGGGGCGCCAATCGGGGGTAC GCTGGAGTTGCTGCAGCTTTTGGGGCGCCAATCGGGGGTAC Direct Loss 0.95399788051194 0 0.93585443 0.8892479 prediction 0.907995761023881 Functional Loss - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11887200 chr1:11887200 synonymous SNV . 0 21 hm5C_associated_SNPs_49227 0 0 1 0 3 CLCN6 chr1:11887172 3'AG 11887172 Downstream 29bp
chr1 11887200 11887200 1 + C T LUSC 11887200 + 11887180 11887220 41 GCTGGAGTTGCTGCAGCTTTCGGGGCGCCAATCGGGGGTAC GCTGGAGTTGCTGCAGCTTTTGGGGCGCCAATCGGGGGTAC Direct Loss 0.95399788051194 0 0.93585443 0.8892479 prediction 0.907995761023881 Functional Loss - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11887200 chr1:11887200 synonymous SNV . 0 21 hm5C_associated_SNPs_49227 0 0 1 0 3 CLCN6 chr1:11887278 5'GT 11887278 Upstream 79bp
chr11 118184576 118184576 1 + C A rs2231447 118184576 + 118184556 118184596 41 ACACGAGGAGCGGGTGCTGGCGGCAGGCAAAGGGGTAAGGC ACACGAGGAGCGGGTGCTGGAGGCAGGCAAAGGGGTAAGGC Direct Loss 0.953959932704284 0 0.89337116 0.8901968 prediction 0.907919865408567 Functional Loss - CD3E ENSG00000198851 CDS Human protein_coding chr11:118184576 chr11:118184576 synonymous SNV . 0 21 hm5C_associated_SNPs_49232 0 0 0 0 1 CD3E chr11:118184589 5'GT 118184589 Upstream 14bp
chr2 220098072 220098072 1 + C T SKCM 220098072 + 220098052 220098092 41 GGGCCAAGCGGGGCACAGCCCAGGGGCTTCGGGATGCCCGA GGGCCAAGCGGGGCACAGCCTAGGGGCTTCGGGATGCCCGA Direct Loss 0.953954795275855 0 0.9208814 0.8646776 prediction 0.907909590551709 Functional Loss - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220098072 chr2:220098072 stopgain 0.998 1 21 hm5C_associated_SNPs_49234 0 0 1 0 2 ANKZF1 chr2:220098008 3'AG 220098008 Downstream 65bp
chr2 220098072 220098072 1 + C T SKCM 220098072 + 220098052 220098092 41 GGGCCAAGCGGGGCACAGCCCAGGGGCTTCGGGATGCCCGA GGGCCAAGCGGGGCACAGCCTAGGGGCTTCGGGATGCCCGA Direct Loss 0.953954795275855 0 0.9208814 0.8646776 prediction 0.907909590551709 Functional Loss - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220098072 chr2:220098072 stopgain 0.998 1 21 hm5C_associated_SNPs_49234 0 0 1 0 2 ANKZF1 chr2:220098155 5'GT 220098155 Upstream 84bp
chr11 61544867 61544867 1 + C A LUAD 61544867 + 61544847 61544887 41 GATGAGGCGCTGGTTGTGCACGGGAATGTCAAGGTCATGGG GATGAGGCGCTGGTTGTGCAAGGGAATGTCAAGGTCATGGG Direct Loss 0.953937609912043 0 0.55203396 0.4091272 prediction 0.907875219824085 Functional Loss - MYRF ENSG00000124920 CDS Human protein_coding chr11:61544867 chr11:61544867 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_49237 0 0 1 0 1 MYRF chr11:61544936 5'GT 61544936 Upstream 70bp
chr11 64137784 64137784 1 + C T PRAD 64137784 + 64137764 64137804 41 CCGAGATCATGTGCAAAATCCGCGAGGGGCGCTTCTCCCTT CCGAGATCATGTGCAAAATCTGCGAGGGGCGCTTCTCCCTT Direct Loss 0.953911697361212 0 0.859695 0.6720648 prediction 0.907823394722424 Functional Loss - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137784 chr11:64137784 nonsynonymous SNV 0.994 2 21 hm5C_associated_SNPs_49240 0 0 0 0 3 RPS6KA4 chr11:64137697 3'AG 64137697 Downstream 88bp
chr11 64137784 64137784 1 + C T PRAD 64137784 + 64137764 64137804 41 CCGAGATCATGTGCAAAATCCGCGAGGGGCGCTTCTCCCTT CCGAGATCATGTGCAAAATCTGCGAGGGGCGCTTCTCCCTT Direct Loss 0.953911697361212 0 0.859695 0.6720648 prediction 0.907823394722424 Functional Loss - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137784 chr11:64137784 nonsynonymous SNV 0.994 2 21 hm5C_associated_SNPs_49240 0 0 0 0 3 RPS6KA4 chr11:64137760 3'AG 64137760 Downstream 25bp
chr11 64137784 64137784 1 + C T PRAD 64137784 + 64137764 64137804 41 CCGAGATCATGTGCAAAATCCGCGAGGGGCGCTTCTCCCTT CCGAGATCATGTGCAAAATCTGCGAGGGGCGCTTCTCCCTT Direct Loss 0.953911697361212 0 0.859695 0.6720648 prediction 0.907823394722424 Functional Loss - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137784 chr11:64137784 nonsynonymous SNV 0.994 2 21 hm5C_associated_SNPs_49240 0 0 0 0 3 RPS6KA4 chr11:64137856 5'GT 64137856 Upstream 73bp
chr19 54606438 54606438 1 + C A CESC 54606438 + 54606418 54606458 41 TCAGGAGTCGGCGCCTTCCTCAAGAATGCCTGGGACAAGGA TCAGGAGTCGGCGCCTTCCTAAAGAATGCCTGGGACAAGGA Direct Loss 0.953900734049029 0 0.8774168 0.5647505 prediction 0.907801468098058 Functional Loss - NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54606438 chr19:54606438 nonsynonymous SNV 0.964 0 21 hm5C_associated_SNPs_49241 0 0 1 0 2 NDUFA3 chr19:54606422 3'AG 54606422 Downstream 17bp
chr19 54606438 54606438 1 + C A CESC 54606438 + 54606418 54606458 41 TCAGGAGTCGGCGCCTTCCTCAAGAATGCCTGGGACAAGGA TCAGGAGTCGGCGCCTTCCTAAAGAATGCCTGGGACAAGGA Direct Loss 0.953900734049029 0 0.8774168 0.5647505 prediction 0.907801468098058 Functional Loss - NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54606438 chr19:54606438 nonsynonymous SNV 0.964 0 21 hm5C_associated_SNPs_49241 0 0 1 0 2 NDUFA3 chr19:54606496 5'GT 54606496 Upstream 59bp
chr17 4859297 4859297 1 + C T SKCM 4859297 + 4859277 4859317 41 CACTTGGACCTCCTTCCTCTCGGGGGTGAACATCCAGATTG CACTTGGACCTCCTTCCTCTTGGGGGTGAACATCCAGATTG Direct Loss 0.953886179002386 0 0.9634296 0.94327825 prediction 0.907772358004772 Functional Loss - ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859297 chr17:4859297 nonsynonymous SNV 0.992 2 21 hm5C_associated_SNPs_49243 0 0 1 0 2 ENO3 chr17:4859237 3'AG 4859237 Downstream 61bp
chr17 4859297 4859297 1 + C T SKCM 4859297 + 4859277 4859317 41 CACTTGGACCTCCTTCCTCTCGGGGGTGAACATCCAGATTG CACTTGGACCTCCTTCCTCTTGGGGGTGAACATCCAGATTG Direct Loss 0.953886179002386 0 0.9634296 0.94327825 prediction 0.907772358004772 Functional Loss - ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859297 chr17:4859297 nonsynonymous SNV 0.992 2 21 hm5C_associated_SNPs_49243 0 0 1 0 2 ENO3 chr17:4859334 5'GT 4859334 Upstream 38bp
chr5 21459805 21459805 1 + C T BLCA 21459805 + 21459785 21459825 41 AGTGACAGGCTCAGACGCATCGGGACCGGACCCGCAGCTTG AGTGACAGGCTCAGACGCATTGGGACCGGACCCGCAGCTTG Direct Loss 0.953874921045537 0 0.87718797 0.6557096 prediction 0.907749842091074 Functional Loss - GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21459805 chr5:21459805 . . 0 21 hm5C_associated_SNPs_49244 0 0 0 0 2 GUSBP1 chr5:21459787 3'AG 21459787 Downstream 19bp
chr5 21459805 21459805 1 + C T BLCA 21459805 + 21459785 21459825 41 AGTGACAGGCTCAGACGCATCGGGACCGGACCCGCAGCTTG AGTGACAGGCTCAGACGCATTGGGACCGGACCCGCAGCTTG Direct Loss 0.953874921045537 0 0.87718797 0.6557096 prediction 0.907749842091074 Functional Loss - GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21459805 chr5:21459805 . . 0 21 hm5C_associated_SNPs_49244 0 0 0 0 2 GUSBP1 chr5:21459852 5'GT 21459852 Upstream 48bp
chr7 73474279 73474279 1 + C T KIRP 73474279 + 73474259 73474299 41 TCCTGGTGTCGGTGTGGCTCCTGGAGTTGGCTTGGCTCCTG TCCTGGTGTCGGTGTGGCTCTTGGAGTTGGCTTGGCTCCTG Direct Loss 0.953874785645196 0 0.87476796 0.88550675 prediction 0.907749571290393 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73474279 chr7:73474279 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_49245 0 0 0 0 3 ELN chr7:73474198 3'AG 73474198 Downstream 82bp
chr7 73474279 73474279 1 + C T KIRP 73474279 + 73474259 73474299 41 TCCTGGTGTCGGTGTGGCTCCTGGAGTTGGCTTGGCTCCTG TCCTGGTGTCGGTGTGGCTCTTGGAGTTGGCTTGGCTCCTG Direct Loss 0.953874785645196 0 0.87476796 0.88550675 prediction 0.907749571290393 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73474279 chr7:73474279 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_49245 0 0 0 0 3 ELN chr7:73474216 3'AG 73474216 Downstream 64bp
chr7 73474279 73474279 1 + C T KIRP 73474279 + 73474259 73474299 41 TCCTGGTGTCGGTGTGGCTCCTGGAGTTGGCTTGGCTCCTG TCCTGGTGTCGGTGTGGCTCTTGGAGTTGGCTTGGCTCCTG Direct Loss 0.953874785645196 0 0.87476796 0.88550675 prediction 0.907749571290393 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73474279 chr7:73474279 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_49245 0 0 0 0 3 ELN chr7:73474377 5'GT 73474377 Upstream 99bp
chrX 30739014 30739014 1 + C T CESC 30739014 + 30738994 30739034 41 TGCACTGGGTGCGGCTATGGCGGCAGGGGCTGCAGAAGGAG TGCACTGGGTGCGGCTATGGTGGCAGGGGCTGCAGAAGGAG Direct Loss 0.953866918841368 0 0.4999799 0.40799093 prediction 0.907733837682735 Functional Loss - GK ENSG00000198814 CDS Human protein_coding chrX:30739014 chrX:30739014 nonsynonymous SNV 0.972 3 21 hm5C_associated_SNPs_49246 0 0 1 0 1 GK chrX:30738969 3'AG 30738969 Downstream 46bp
chr21 47548853 47548853 1 + C G rs115833459 47548853 + 47548833 47548873 41 TTTGTGCTGAAAGGTTTTCTCGGGGTCCGTGGTGTCCCCCA TTTGTGCTGAAAGGTTTTCTGGGGGTCCGTGGTGTCCCCCA Direct Loss 0.953849748569896 0 0.9542763 0.8897615 prediction 0.907699497139792 Functional Loss - COL6A2 ENSG00000142173 UTR3 Human protein_coding chr21:47548853 chr21:47548853 . . 0 21 hm5C_associated_SNPs_49248 0 0 0 0 1 COL6A2 chr21:47548817 3'AG 47548817 Downstream 37bp
chr7 133868553 133868553 1 + C T CESC 133868553 + 133868533 133868573 41 GTCCTGAAGCTTGTGGGAAACGAGAGCTTGCCCATCGCCTC GTCCTGAAGCTTGTGGGAAATGAGAGCTTGCCCATCGCCTC Direct Loss 0.953842698685126 0 0.52067006 0.53619635 prediction 0.907685397370252 Functional Loss - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133868553 chr7:133868553 stopgain 0.996 1 21 hm5C_associated_SNPs_49250 0 0 0 0 2 LRGUK chr7:133868486 3'AG 133868486 Downstream 68bp
chr7 133868553 133868553 1 + C T CESC 133868553 + 133868533 133868573 41 GTCCTGAAGCTTGTGGGAAACGAGAGCTTGCCCATCGCCTC GTCCTGAAGCTTGTGGGAAATGAGAGCTTGCCCATCGCCTC Direct Loss 0.953842698685126 0 0.52067006 0.53619635 prediction 0.907685397370252 Functional Loss - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133868553 chr7:133868553 stopgain 0.996 1 21 hm5C_associated_SNPs_49250 0 0 0 0 2 LRGUK chr7:133868605 5'GT 133868605 Upstream 53bp
chr3 157155332 157155332 1 + C T BLCA 157155332 + 157155312 157155352 41 CGCCTGCGGTCAGGAGCACTCGGAATGGGACAAGCTCTTCA CGCCTGCGGTCAGGAGCACTTGGAATGGGACAAGCTCTTCA Direct Loss 0.953815448363762 0 0.9099455 0.361367 prediction 0.907630896727525 Functional Loss - PTX3 ENSG00000163661 CDS Human protein_coding chr3:157155332 chr3:157155332 nonsynonymous SNV 0.012 1 21 hm5C_associated_SNPs_49255 0 0 0 0 1 PTX3 chr3:157155302 3'AG 157155302 Downstream 31bp
chr17 21904161 21904161 1 + C T BRCA 21904161 + 21904141 21904181 41 AGGAAACCACAGGCGGAGTCCGGGGGAAGCAGCGTGGCATC AGGAAACCACAGGCGGAGTCTGGGGGAAGCAGCGTGGCATC Direct Loss 0.953812246066701 0 0.9132762 0.8985921 prediction 0.907624492133401 Functional Loss - FLJ36000 ENSG00000266172 ncRNA_exonic Human other chr17:21904161 chr17:21904161 . . 0 21 hm5C_associated_SNPs_49256 0 0 0 0 1 FLJ36000 chr17:21904212 5'GT 21904212 Upstream 52bp
chr14 76012817 76012817 1 + C T THCA 76012817 + 76012797 76012837 41 CCCTACAGGAGAGCGAAGACCTGGAGAAACAGAACGCGGCT CCCTACAGGAGAGCGAAGACTTGGAGAAACAGAACGCGGCT Direct Loss 0.953792764885885 0 0.55883694 0.40740764 prediction 0.90758552977177 Functional Loss - BATF ENSG00000156127 CDS Human protein_coding chr14:76012817 chr14:76012817 synonymous SNV . 0 21 hm5C_associated_SNPs_49260 0 0 0 0 1 BATF chr14:76012805 3'AG 76012805 Downstream 13bp
chr16 19079057 19079057 1 + C T LUAD 19079057 + 19079037 19079077 41 GGGGGCCCGGCGGTCCCTCTCAGGTAAAAGGAGGCGCGCAG GGGGGCCCGGCGGTCCCTCTTAGGTAAAAGGAGGCGCGCAG Direct Loss 0.953759191216943 0 0.9233158 0.71036315 prediction 0.907518382433886 Functional Loss - COQ7 ENSG00000167186 CDS Human protein_coding chr16:19079057 chr16:19079057 nonsynonymous SNV 0.478 0 21 hm5C_associated_SNPs_49262 0 0 1 0 1 COQ7 chr16:19079059 5'GT 19079059 Upstream 3bp
chr5 156738736 156738736 1 + C T STAD 156738736 + 156738716 156738756 41 GCGAGCAGATGGTTCAGATCCGGGATGACCACATCCGCTTC GCGAGCAGATGGTTCAGATCTGGGATGACCACATCCGCTTC Direct Loss 0.953737015181885 0 0.93277025 0.8985526 prediction 0.907474030363771 Functional Loss - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156738736 chr5:156738736 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_49265 0 0 1 0 2 CYFIP2 chr5:156738672 3'AG 156738672 Downstream 65bp
chr5 156738736 156738736 1 + C T STAD 156738736 + 156738716 156738756 41 GCGAGCAGATGGTTCAGATCCGGGATGACCACATCCGCTTC GCGAGCAGATGGTTCAGATCTGGGATGACCACATCCGCTTC Direct Loss 0.953737015181885 0 0.93277025 0.8985526 prediction 0.907474030363771 Functional Loss - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156738736 chr5:156738736 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_49265 0 0 1 0 2 CYFIP2 chr5:156738789 5'GT 156738789 Upstream 54bp
chr2 54014410 54014410 1 + C T THCA 54014410 + 54014390 54014430 41 GGGCCGGTGTTACTGGTCCTCTGCGGCCTCCTGGAGGCGTC GGGCCGGTGTTACTGGTCCTTTGCGGCCTCCTGGAGGCGTC Direct Loss 0.953705562332953 0 0.4218989 0.41272455 prediction 0.907411124665906 Functional Loss - ERLEC1 ENSG00000068912 CDS Human protein_coding chr2:54014410 chr2:54014410 synonymous SNV . 0 21 hm5C_associated_SNPs_49266 0 0 1 0 1 ERLEC1 chr2:54014509 5'GT 54014509 Upstream 100bp
chr1 65886400 65886400 1 + C T rs189950527 65886400 + 65886380 65886420 41 AAGCAGCCGCGGCCCCAGTTCGGGAGACATGGCGGGCGTTA AAGCAGCCGCGGCCCCAGTTTGGGAGACATGGCGGGCGTTA Direct Loss 0.953669920975001 0 0.9348383 0.9085053 prediction 0.907339841950003 Functional Loss - LEPR;LEPROT ENSG00000116678;ENSG00000213625 UTR5 Human protein_coding chr1:65886400 chr1:65886400 . . 0 21 hm5C_associated_SNPs_49268 2 0 1 0 1 LEPROT chr1:65886423 5'GT 65886423 Upstream 24bp
chr1 183212320 183212320 1 + C A rs587281 183212320 + 183212300 183212340 41 ATGAAGAGGGGCTGGTCTTACTGGAGCAGAAGCTTTCCCGA ATGAAGAGGGGCTGGTCTTAATGGAGCAGAAGCTTTCCCGA Direct Loss 0.953610164340115 0 0.79941 0.69661546 prediction 0.907220328680231 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183212320 chr1:183212320 nonsynonymous SNV 0.022 5 21 hm5C_associated_SNPs_49274 0 0 0 0 1 LAMC2 chr1:183212282 3'AG 183212282 Downstream 39bp
chr11 66299434 66299434 1 + C T UCEC 66299434 + 66299414 66299454 41 CTCCATAGGTGCTGGTGCTTCGAGAAGGCCAAAGTGCACCC CTCCATAGGTGCTGGTGCTTTGAGAAGGCCAAAGTGCACCC Direct Loss 0.953604703622475 0 0.8377579 0.656927 prediction 0.907209407244949 Functional Loss - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66299434 chr11:66299434 stopgain 0.987 0 21 hm5C_associated_SNPs_49275 0 0 0 0 1 BBS1 chr11:66299422 3'AG 66299422 Downstream 13bp
chr19 17392775 17392775 1 + C T rs566303446 17392775 + 17392755 17392795 41 GCAGGTTGCGGGATGCGCTGCGGGAGGAGGAGCCGTGGTGA GCAGGTTGCGGGATGCGCTGTGGGAGGAGGAGCCGTGGTGA Direct Loss 0.953600712116186 0 0.9035123 0.8773776 prediction 0.907201424232371 Functional Loss - ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17392775 chr19:17392775 nonsynonymous SNV 0.467 0 21 hm5C_associated_SNPs_49277 0 0 0 0 1 ANKLE1 chr19:17392791 5'GT 17392791 Upstream 17bp
chr17 58227428 58227428 1 + C T DLBC 58227428 + 58227408 58227448 41 CTGGCGCTCCTGGCCCTCTCCGCGGCGCGGCCATCGGCCAG CTGGCGCTCCTGGCCCTCTCTGCGGCGCGGCCATCGGCCAG Direct Loss 0.9535919553266 0 0.90035385 0.8636553 prediction 0.907183910653201 Functional Loss - CA4 ENSG00000167434 CDS Human protein_coding chr17:58227428 chr17:58227428 synonymous SNV . 0 21 hm5C_associated_SNPs_49278 0 0 0 0 1 CA4 chr17:58227453 5'GT 58227453 Upstream 26bp
chr22 42394846 42394846 1 + C T BLCA 42394846 + 42394826 42394866 41 GCGGTGAATCAGAGCCACACCGAGAACCGCCGCGGAGCCCT GCGGTGAATCAGAGCCACACTGAGAACCGCCGCGGAGCCCT Direct Loss 0.953558548208327 0 0.44236308 0.77924955 prediction 0.907117096416654 Functional Loss - WBP2NL ENSG00000183066 CDS Human protein_coding chr22:42394846 chr22:42394846 synonymous SNV . 0 21 hm5C_associated_SNPs_49279 0 0 0 0 1 WBP2NL chr22:42394884 5'GT 42394884 Upstream 39bp
chr19 12783866 12783866 1 + C T COAD 12783866 + 12783846 12783886 41 GCCGGGATGGGCAGTGCACCCTGGTGTCCAGCCTGGACTCC GCCGGGATGGGCAGTGCACCTTGGTGTCCAGCCTGGACTCC Direct Loss 0.953551733240291 0 0.40774935 0.34286362 prediction 0.907103466480581 Functional Loss - WDR83 ENSG00000123154 CDS Human protein_coding chr19:12783866 chr19:12783866 synonymous SNV . 0 21 hm5C_associated_SNPs_49280 0 0 1 0 2 WDR83 chr19:12783822 3'AG 12783822 Downstream 45bp
chr19 12783866 12783866 1 + C T COAD 12783866 + 12783846 12783886 41 GCCGGGATGGGCAGTGCACCCTGGTGTCCAGCCTGGACTCC GCCGGGATGGGCAGTGCACCTTGGTGTCCAGCCTGGACTCC Direct Loss 0.953551733240291 0 0.40774935 0.34286362 prediction 0.907103466480581 Functional Loss - WDR83 ENSG00000123154 CDS Human protein_coding chr19:12783866 chr19:12783866 synonymous SNV . 0 21 hm5C_associated_SNPs_49280 0 0 1 0 2 WDR83 chr19:12783930 5'GT 12783930 Upstream 65bp
chr10 71849844 71849844 1 + C T rs114922371 71849844 + 71849824 71849864 41 CTAGAATTGGCCGGCAATGCCGCGAGGGACAACAAGAAGGC CTAGAATTGGCCGGCAATGCTGCGAGGGACAACAAGAAGGC Direct Loss 0.953511347293006 0 0.48365065 0.57039434 prediction 0.907022694586012 Functional Loss - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71849844 chr10:71849844 synonymous SNV . 0 21 hm5C_associated_SNPs_49287 0 0 1 0 2 H2AFY2 chr10:71849816 3'AG 71849816 Downstream 29bp
chr10 71849844 71849844 1 + C T rs114922371 71849844 + 71849824 71849864 41 CTAGAATTGGCCGGCAATGCCGCGAGGGACAACAAGAAGGC CTAGAATTGGCCGGCAATGCTGCGAGGGACAACAAGAAGGC Direct Loss 0.953511347293006 0 0.48365065 0.57039434 prediction 0.907022694586012 Functional Loss - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71849844 chr10:71849844 synonymous SNV . 0 21 hm5C_associated_SNPs_49287 0 0 1 0 2 H2AFY2 chr10:71849922 5'GT 71849922 Upstream 79bp
chr4 109088926 109088926 1 + C G rs190386439 109088926 + 109088906 109088946 41 TCCGGAGAGTTGGGGCATCCCGGCGGCTCTGTAATCTCCGC TCCGGAGAGTTGGGGCATCCGGGCGGCTCTGTAATCTCCGC Direct Loss 0.953488757057567 0 0.8935393 0.8908315 prediction 0.906977514115133 Functional Loss - LEF1-AS1 ENSG00000232021 ncRNA_exonic Human processed_transcript chr4:109088926 chr4:109088926 . . 0 21 hm5C_associated_SNPs_49289 0 0 0 0 1 LEF1-AS1 chr4:109088989 5'GT 109088989 Upstream 64bp
chr19 38795511 38795511 1 + C A rs7248001 38795511 + 38795491 38795531 41 GCTGCTGGCTCCAAGCAGCACGAGAGCATCCCGGGCAAGGC GCTGCTGGCTCCAAGCAGCAAGAGAGCATCCCGGGCAAGGC Direct Loss 0.953477984613006 0 0.5494275 0.729831 prediction 0.906955969226011 Functional Loss - C19orf33 ENSG00000167644;ENSG00000267748 CDS Human other chr19:38795511 chr19:38795511 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_49291 0 0 0 0 1 C19orf33 chr19:38795485 3'AG 38795485 Downstream 27bp
chr1 227171527 227171527 1 + C T READ 227171527 + 227171507 227171547 41 CCCTGGAGTGTGACTACCAGCGAGAGGCCGCCTGTGCCCGC CCCTGGAGTGTGACTACCAGTGAGAGGCCGCCTGTGCCCGC Direct Loss 0.953464125918072 0 0.8869479 0.5523644 prediction 0.906928251836145 Functional Loss - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227171527 chr1:227171527 stopgain 0.477 1 21 hm5C_associated_SNPs_49293 1 0 1 0 2 COQ8A chr1:227171462 3'AG 227171462 Downstream 66bp
chr1 227171527 227171527 1 + C T READ 227171527 + 227171507 227171547 41 CCCTGGAGTGTGACTACCAGCGAGAGGCCGCCTGTGCCCGC CCCTGGAGTGTGACTACCAGTGAGAGGCCGCCTGTGCCCGC Direct Loss 0.953464125918072 0 0.8869479 0.5523644 prediction 0.906928251836145 Functional Loss - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227171527 chr1:227171527 stopgain 0.477 1 21 hm5C_associated_SNPs_49293 1 0 1 0 2 COQ8A chr1:227171555 5'GT 227171555 Upstream 29bp
chr8 86158082 86158082 1 + C T rs200216745 86158082 + 86158062 86158102 41 CGAGGCTCAGCTGGGGATACCGCGAGCACAACGGTGAGCGC CGAGGCTCAGCTGGGGATACTGCGAGCACAACGGTGAGCGC Direct Loss 0.953453897200275 0 0.6466016 0.55592996 prediction 0.906907794400549 Functional Loss - CA13 ENSG00000185015 CDS Human protein_coding chr8:86158082 chr8:86158082 nonsynonymous SNV 0.984 1 21 hm5C_associated_SNPs_49294 0 0 1 0 1 CA13 chr8:86158094 5'GT 86158094 Upstream 13bp
chr19 41595962 41595962 1 + C T BRCA 41595962 + 41595942 41595982 41 ACCTCCCCAGGCGTGGCGTTCAGCAACGGGGAGCGCGCCAA ACCTCCCCAGGCGTGGCGTTTAGCAACGGGGAGCGCGCCAA Direct Loss 0.953446888758135 0 0.49880278 0.46651995 prediction 0.90689377751627 Functional Loss - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41595962 chr19:41595962 synonymous SNV . 0 21 hm5C_associated_SNPs_49297 0 0 0 0 1 CYP2A13 chr19:41595952 3'AG 41595952 Downstream 11bp
chr7 154862792 154862792 1 - G T LUSC 154862792 - 154862772 154862812 41 ACACGGAGGATGGTCGCCAGCACCAGCAGGTTCCAGGCGAA ACACGGAGGATGGTCGCCAGAACCAGCAGGTTCCAGGCGAA Direct Loss 0.95342722392926 0 0.30788267 0.43539482 prediction 0.906854447858519 Functional Loss - HTR5A ENSG00000157219;ENSG00000220575 CDS Human other chr7:154862792 chr7:154862792 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_49298 0 0 0 0 1 HTR5A chr7:154862744 5'GT 154862744 Upstream 49bp
chr19 13910684 13910684 1 + C A UCEC 13910684 + 13910664 13910704 41 ATGCCCGGGTGCCCTTTACCCGCGGGCTGCACCTGCTCCAG ATGCCCGGGTGCCCTTTACCAGCGGGCTGCACCTGCTCCAG Direct Loss 0.953402187470621 0 0.9263706 0.9281296 prediction 0.906804374941242 Functional Loss - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13910684 chr19:13910684 nonsynonymous SNV 0.763 1 21 hm5C_associated_SNPs_49301 0 0 0 0 1 ZSWIM4 chr19:13910735 5'GT 13910735 Upstream 52bp
chr1 109271412 109271412 1 + C T STAD 109271412 + 109271392 109271432 41 CAGGAGAGTCCTGCACCATGCGGGGCTTGCCCTGTGGCTCA CAGGAGAGTCCTGCACCATGTGGGGCTTGCCCTGTGGCTCA Direct Loss 0.953388008549684 0 0.93067414 0.8354901 prediction 0.906776017099368 Functional Loss - FNDC7 ENSG00000143107 CDS Human protein_coding chr1:109271412 chr1:109271412 nonsynonymous SNV 0.012 1 21 hm5C_associated_SNPs_49302 0 0 0 0 1 FNDC7 chr1:109271508 5'GT 109271508 Upstream 97bp
chr16 88926359 88926359 1 + C A THCA 88926359 + 88926339 88926379 41 GTGCAACCCCTTCTACAACCCGGGGGACCGCATCCAGTCCA GTGCAACCCCTTCTACAACCAGGGGGACCGCATCCAGTCCA Direct Loss 0.953349773723957 0 0.9152378 0.9378537 prediction 0.906699547447914 Functional Loss - TRAPPC2L ENSG00000167515 CDS Human protein_coding chr16:88926359 chr16:88926359 nonsynonymous SNV 0.945 5 21 hm5C_associated_SNPs_49305 0 0 1 0 2 TRAPPC2L chr16:88926301 3'AG 88926301 Downstream 59bp
chr16 88926359 88926359 1 + C A THCA 88926359 + 88926339 88926379 41 GTGCAACCCCTTCTACAACCCGGGGGACCGCATCCAGTCCA GTGCAACCCCTTCTACAACCAGGGGGACCGCATCCAGTCCA Direct Loss 0.953349773723957 0 0.9152378 0.9378537 prediction 0.906699547447914 Functional Loss - TRAPPC2L ENSG00000167515 CDS Human protein_coding chr16:88926359 chr16:88926359 nonsynonymous SNV 0.945 5 21 hm5C_associated_SNPs_49305 0 0 1 0 2 TRAPPC2L chr16:88926380 5'GT 88926380 Upstream 22bp
chr2 9614758 9614758 1 + C T rs571487863 9614758 + 9614738 9614778 41 TGGCCTCGCTTGTTGCTCTTCGGGGACTCCATCACCCAGGT TGGCCTCGCTTGTTGCTCTTTGGGGACTCCATCACCCAGGT Direct Loss 0.953339407975593 0 0.9419068 0.72597945 prediction 0.906678815951187 Functional Loss - IAH1 ENSG00000134330 CDS Human protein_coding chr2:9614758 chr2:9614758 synonymous SNV . 0 21 hm5C_associated_SNPs_49307 0 0 1 0 1 IAH1 chr2:9614776 5'GT 9614776 Upstream 19bp
chr1 47610366 47610366 1 + C T PRAD 47610366 + 47610346 47610386 41 CCAAGCATCAGGAGAGGTGCCGGGAGGAGATCCATGGCCTC CCAAGCATCAGGAGAGGTGCTGGGAGGAGATCCATGGCCTC Direct Loss 0.953325116970185 0 0.69420075 0.5522337 prediction 0.90665023394037 Functional Loss - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47610366 chr1:47610366 nonsynonymous SNV 0.006 4 21 hm5C_associated_SNPs_49308 0 0 0 0 1 CYP4A22 chr1:47610412 5'GT 47610412 Upstream 47bp
chr20 31825902 31825902 1 + C A COAD 31825902 + 31825882 31825922 41 CTGGGGGCCTGTTGGGCATTCTGGAAAACCTTCCGCTCCTG CTGGGGGCCTGTTGGGCATTATGGAAAACCTTCCGCTCCTG Direct Loss 0.953297492377393 0 0.67712975 0.58064884 prediction 0.906594984754785 Functional Loss - BPIFA1 ENSG00000198183 CDS Human protein_coding chr20:31825902 chr20:31825902 nonsynonymous SNV 0.858 3 21 hm5C_associated_SNPs_49312 0 0 0 0 1 BPIFA1 chr20:31825861 3'AG 31825861 Downstream 42bp
chr1 177226391 177226391 1 + C T UCEC 177226391 + 177226371 177226411 41 ACAGGAGGTGCCTCTATAATCGGGGGCAGTGGGAACAGCAC ACAGGAGGTGCCTCTATAATTGGGGGCAGTGGGAACAGCAC Direct Loss 0.953296153592373 0 0.9632229 0.9390444 prediction 0.906592307184745 Functional Loss - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177226391 chr1:177226391 synonymous SNV . 0 21 hm5C_associated_SNPs_49314 0 0 0 0 1 BRINP2 chr1:177226312 3'AG 177226312 Downstream 80bp
chr20 57876505 57876505 1 + C T UCEC 57876505 + 57876485 57876525 41 TCTGGGGATGCTGGCAGGCGCGGCGTGTCCCAGGCCCCCAC TCTGGGGATGCTGGCAGGCGTGGCGTGTCCCAGGCCCCCAC Direct Loss 0.953287162182968 0 0.885536 0.83108383 prediction 0.906574324365936 Functional Loss - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57876505 chr20:57876505 synonymous SNV . 0 21 hm5C_associated_SNPs_49317 0 0 0 0 1 EDN3 chr20:57876465 3'AG 57876465 Downstream 41bp
chr2 171572854 171572854 1 + C A UCEC 171572854 + 171572834 171572874 41 CTGTAGCCGCATCGGCCAGCCGGGCGCGGCGGCGCCCCCGG CTGTAGCCGCATCGGCCAGCAGGGCGCGGCGGCGCCCCCGG Direct Loss 0.953248538289639 0 0.8860187 0.90141904 prediction 0.906497076579277 Functional Loss - SP5 ENSG00000204335 CDS Human protein_coding chr2:171572854 chr2:171572854 nonsynonymous SNV 0.633 0 21 hm5C_associated_SNPs_49323 0 0 1 0 1 SP5 chr2:171572769 3'AG 171572769 Downstream 86bp
chr18 47095827 47095827 1 + C T KIRC 47095827 + 47095807 47095847 41 GAGAAGGACGATTTTTCTCTCGGGAATGTCCACTTGATCGG GAGAAGGACGATTTTTCTCTTGGGAATGTCCACTTGATCGG Direct Loss 0.953175208528189 0 0.9126377 0.55454224 prediction 0.906350417056378 Functional Loss - LIPG ENSG00000101670 CDS Human protein_coding chr18:47095827 chr18:47095827 synonymous SNV . 0 21 hm5C_associated_SNPs_49330 0 0 0 0 2 LIPG chr18:47095807 3'AG 47095807 Downstream 21bp
chr18 47095827 47095827 1 + C T KIRC 47095827 + 47095807 47095847 41 GAGAAGGACGATTTTTCTCTCGGGAATGTCCACTTGATCGG GAGAAGGACGATTTTTCTCTTGGGAATGTCCACTTGATCGG Direct Loss 0.953175208528189 0 0.9126377 0.55454224 prediction 0.906350417056378 Functional Loss - LIPG ENSG00000101670 CDS Human protein_coding chr18:47095827 chr18:47095827 synonymous SNV . 0 21 hm5C_associated_SNPs_49330 0 0 0 0 2 LIPG chr18:47095918 5'GT 47095918 Upstream 92bp
chr1 203276287 203276287 1 + C G DLBC 203276287 + 203276267 203276307 41 TCCAAGGGCTCCGGCTACCGCTGCATTCGCATCAACCACAA TCCAAGGGCTCCGGCTACCGGTGCATTCGCATCAACCACAA Direct Loss 0.953149356392262 0 0.16315198 0.19820973 prediction 0.906298712784523 Functional Loss - BTG2 ENSG00000159388 CDS Human protein_coding chr1:203276287 chr1:203276287 synonymous SNV . 0 21 hm5C_associated_SNPs_49333 0 0 1 0 1 BTG2 chr1:203276232 3'AG 203276232 Downstream 56bp
chr1 236902695 236902695 1 + C T UCEC 236902695 + 236902675 236902715 41 AGAAGAAGCTGGAGGACTTCCGGGATTACCGCCGGAAGCAC AGAAGAAGCTGGAGGACTTCTGGGATTACCGCCGGAAGCAC Direct Loss 0.95314347673835 0 0.89189667 0.72110647 prediction 0.9062869534767 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236902695 chr1:236902695 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_49336 1 0 0 0 1 ACTN2 chr1:236902602 3'AG 236902602 Downstream 94bp
chr17 79077474 79077474 1 + C T SKCM 79077474 + 79077454 79077494 41 GGTCATTTCCGACCCCATTCCGGGGGCCAAGCCCCTGCCGG GGTCATTTCCGACCCCATTCTGGGGGCCAAGCCCCTGCCGG Direct Loss 0.953106174193191 0 0.95557845 0.9399067 prediction 0.906212348386381 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79077474 chr17:79077474 nonsynonymous SNV 0.931 4 21 hm5C_associated_SNPs_49344 0 0 0 0 1 BAIAP2 chr17:79077523 5'GT 79077523 Upstream 50bp
chr19 3585802 3585802 1 + C G CESC 3585802 + 3585782 3585822 41 GCCAAGATCGCCGAAGCCTTCGGGATCGCGCCCACCGAGGT GCCAAGATCGCCGAAGCCTTGGGGATCGCGCCCACCGAGGT Direct Loss 0.953095463243741 0 0.89830685 0.69681334 prediction 0.906190926487483 Functional Loss - GIPC3 ENSG00000179855 CDS Human protein_coding chr19:3585802 chr19:3585802 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_49346 0 0 0 0 1 GIPC3 chr19:3585820 5'GT 3585820 Upstream 19bp
chr12 2930756 2930756 1 + C G LUAD 2930756 + 2930736 2930776 41 GCCTCTTTGCCCTGTGCACCCTGGATGGTGAGCAATGCTAG GCCTCTTTGCCCTGTGCACCGTGGATGGTGAGCAATGCTAG Direct Loss 0.953089200410656 0 0.28694913 0.3216666 prediction 0.906178400821312 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2930756 chr12:2930756 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_49347 0 0 1 0 2 ITFG2 chr12:2930709 3'AG 2930709 Downstream 48bp
chr12 2930756 2930756 1 + C G LUAD 2930756 + 2930736 2930776 41 GCCTCTTTGCCCTGTGCACCCTGGATGGTGAGCAATGCTAG GCCTCTTTGCCCTGTGCACCGTGGATGGTGAGCAATGCTAG Direct Loss 0.953089200410656 0 0.28694913 0.3216666 prediction 0.906178400821312 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2930756 chr12:2930756 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_49347 0 0 1 0 2 ITFG2 chr12:2930762 5'GT 2930762 Upstream 7bp
chrX 7811258 7811258 1 + C T UCS 7811258 + 7811238 7811278 41 GCGGAAGATGAGTCCAAAGCCGAGAGCCTCGGGACCTCCGG GCGGAAGATGAGTCCAAAGCTGAGAGCCTCGGGACCTCCGG Direct Loss 0.953074872482392 0 0.90612084 0.89269173 prediction 0.906149744964785 Functional Loss - VCX ENSG00000182583 CDS Human protein_coding chrX:7811258 chrX:7811258 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_49348 0 0 0 0 1 VCX chrX:7811346 5'GT 7811346 Upstream 89bp
chrX 128922467 128922467 1 + C T UCEC 128922467 + 128922447 128922487 41 CTGGGAAGAGTGGCAAAAAGCTGGGGAAGAAGTGGAGGGCA CTGGGAAGAGTGGCAAAAAGTTGGGGAAGAAGTGGAGGGCA Direct Loss 0.953035962473974 0 0.81568694 0.4914381 prediction 0.906071924947948 Functional Loss - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128922467 chrX:128922467 synonymous SNV . 0 21 hm5C_associated_SNPs_49353 0 0 0 0 2 SASH3 chrX:128922407 3'AG 128922407 Downstream 61bp
chrX 128922467 128922467 1 + C T UCEC 128922467 + 128922447 128922487 41 CTGGGAAGAGTGGCAAAAAGCTGGGGAAGAAGTGGAGGGCA CTGGGAAGAGTGGCAAAAAGTTGGGGAAGAAGTGGAGGGCA Direct Loss 0.953035962473974 0 0.81568694 0.4914381 prediction 0.906071924947948 Functional Loss - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128922467 chrX:128922467 synonymous SNV . 0 21 hm5C_associated_SNPs_49353 0 0 0 0 2 SASH3 chrX:128922553 5'GT 128922553 Upstream 87bp
chr6 26505209 26505209 1 + C A UCEC 26505209 + 26505189 26505229 41 AAGAGAATGGAGAAATCTGTCTGGAGTGCACCTCAGTGGGA AAGAGAATGGAGAAATCTGTATGGAGTGCACCTCAGTGGGA Direct Loss 0.952998823181317 0 0.79673445 0.45382392 prediction 0.905997646362634 Functional Loss - BTN1A1 ENSG00000124557 CDS Human protein_coding chr6:26505209 chr6:26505209 nonsynonymous SNV 0.487 4 21 hm5C_associated_SNPs_49358 0 0 0 0 1 BTN1A1 chr6:26505153 3'AG 26505153 Downstream 57bp
chr3 122296665 122296665 1 + C T COAD 122296665 + 122296645 122296685 41 CGGCCGGGAACCGTGGGGCGCGGAAGGCCTCCCGGCGCTCT CGGCCGGGAACCGTGGGGCGTGGAAGGCCTCCCGGCGCTCT Direct Loss 0.952998456646734 0 0.87356627 0.7990254 prediction 0.905996913293468 Functional Loss - PARP15 ENSG00000173200 CDS Human protein_coding chr3:122296665 chr3:122296665 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_49359 0 0 0 0 1 PARP15 chr3:122296700 5'GT 122296700 Upstream 36bp
chr20 58342339 58342339 1 + C A LUAD 58342339 + 58342319 58342359 41 CCTTAGCTGGGGCTGACTCCCTGGACAGTCCTCCCAGACCT CCTTAGCTGGGGCTGACTCCATGGACAGTCCTCCCAGACCT Direct Loss 0.95298175160285 0 0.6823357 0.14478481 prediction 0.905963503205701 Functional Loss - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58342339 chr20:58342339 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_49362 0 0 0 0 1 PHACTR3 chr20:58342241 3'AG 58342241 Downstream 99bp
chr1 110009695 110009695 1 + C G rs545789101 110009695 + 110009675 110009715 41 CCGCAGGTGGACCGCCTACTCGTGGGGCTGCGCTGGCGGCG CCGCAGGTGGACCGCCTACTGGTGGGGCTGCGCTGGCGGCG Direct Loss 0.952930780161952 0 0.92111486 0.5399504 prediction 0.905861560323904 Functional Loss - SYPL2 ENSG00000143028 CDS Human protein_coding chr1:110009695 chr1:110009695 synonymous SNV . 0 21 hm5C_associated_SNPs_49370 0 0 0 0 2 SYPL2 chr1:110009681 3'AG 110009681 Downstream 15bp
chr1 110009695 110009695 1 + C G rs545789101 110009695 + 110009675 110009715 41 CCGCAGGTGGACCGCCTACTCGTGGGGCTGCGCTGGCGGCG CCGCAGGTGGACCGCCTACTGGTGGGGCTGCGCTGGCGGCG Direct Loss 0.952930780161952 0 0.92111486 0.5399504 prediction 0.905861560323904 Functional Loss - SYPL2 ENSG00000143028 CDS Human protein_coding chr1:110009695 chr1:110009695 synonymous SNV . 0 21 hm5C_associated_SNPs_49370 0 0 0 0 2 SYPL2 chr1:110009755 5'GT 110009755 Upstream 61bp
chr5 76115011 76115011 1 + C A rs61749608 76115011 + 76114991 76115031 41 TCGGGGCTTCCAGGAGGATGCGGAGCCCCAGCGCGGCGTGG TCGGGGCTTCCAGGAGGATGAGGAGCCCCAGCGCGGCGTGG Direct Loss 0.95292985279288 0 0.93534315 0.9244491 prediction 0.90585970558576 Functional Loss - F2RL1 ENSG00000164251 CDS Human protein_coding chr5:76115011 chr5:76115011 synonymous SNV . 0 21 hm5C_associated_SNPs_49371 0 0 1 0 1 F2RL1 chr5:76115089 5'GT 76115089 Upstream 79bp
chr16 67683016 67683016 1 + C A BLCA 67683016 + 67682996 67683036 41 GTGACTCTGGTGCTGGCCATCGGGAGAAGCCGGTCCCTGAG GTGACTCTGGTGCTGGCCATAGGGAGAAGCCGGTCCCTGAG Direct Loss 0.952928890174489 0 0.9614115 0.92818046 prediction 0.905857780348977 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67683016 chr16:67683016 synonymous SNV . 0 21 hm5C_associated_SNPs_49372 0 0 0 0 2 CARMIL2 chr16:67682979 3'AG 67682979 Downstream 38bp
chr16 67683016 67683016 1 + C A BLCA 67683016 + 67682996 67683036 41 GTGACTCTGGTGCTGGCCATCGGGAGAAGCCGGTCCCTGAG GTGACTCTGGTGCTGGCCATAGGGAGAAGCCGGTCCCTGAG Direct Loss 0.952928890174489 0 0.9614115 0.92818046 prediction 0.905857780348977 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67683016 chr16:67683016 synonymous SNV . 0 21 hm5C_associated_SNPs_49372 0 0 0 0 2 CARMIL2 chr16:67683075 5'GT 67683075 Upstream 60bp
chr17 42152399 42152399 1 + C T SKCM 42152399 + 42152379 42152419 41 CCTTTTGGCGGTTGGCTTGTCGCGAATCTTCATCTTAGCAC CCTTTTGGCGGTTGGCTTGTTGCGAATCTTCATCTTAGCAC Direct Loss 0.952911764844439 0 0.38462868 0.06294477 prediction 0.905823529688879 Functional Loss - G6PC3 ENSG00000141349 CDS Human protein_coding chr17:42152399 chr17:42152399 nonsynonymous SNV 0.810 5 21 hm5C_associated_SNPs_49374 0 0 1 0 2 G6PC3 chr17:42152337 3'AG 42152337 Downstream 63bp
chr17 42152399 42152399 1 + C T SKCM 42152399 + 42152379 42152419 41 CCTTTTGGCGGTTGGCTTGTCGCGAATCTTCATCTTAGCAC CCTTTTGGCGGTTGGCTTGTTGCGAATCTTCATCTTAGCAC Direct Loss 0.952911764844439 0 0.38462868 0.06294477 prediction 0.905823529688879 Functional Loss - G6PC3 ENSG00000141349 CDS Human protein_coding chr17:42152399 chr17:42152399 nonsynonymous SNV 0.810 5 21 hm5C_associated_SNPs_49374 0 0 1 0 2 G6PC3 chr17:42152455 5'GT 42152455 Upstream 57bp
chr3 16242184 16242184 1 + C T COAD 16242184 + 16242164 16242204 41 CTGGAGGGGGTGAAGTTACTCAGGAGCAACAAGAGGCTGGG CTGGAGGGGGTGAAGTTACTTAGGAGCAACAAGAGGCTGGG Direct Loss 0.952908069325911 0 0.909642 0.90164936 prediction 0.905816138651822 Functional Loss - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16242184 chr3:16242184 stopgain . 0 21 hm5C_associated_SNPs_49375 0 0 0 0 1 GALNT15 chr3:16242126 3'AG 16242126 Downstream 59bp
chr22 30163499 30163499 1 + C T BLCA 30163499 + 30163479 30163519 41 TCTTCGAGCGCGCCTTCGATCAAGGCGCGGACGCTATCTAC TCTTCGAGCGCGCCTTCGATTAAGGCGCGGACGCTATCTAC Direct Loss 0.95287533038516 0 0.9199492 0.8047602 prediction 0.90575066077032 Functional Loss - UQCR10 ENSG00000184076 CDS Human protein_coding chr22:30163499 chr22:30163499 stopgain 0.999 0 21 hm5C_associated_SNPs_49378 0 0 1 0 2 UQCR10 chr22:30163537 5'GT 30163537 Upstream 39bp
chr22 30163499 30163499 1 + C T BLCA 30163499 + 30163479 30163519 41 TCTTCGAGCGCGCCTTCGATCAAGGCGCGGACGCTATCTAC TCTTCGAGCGCGCCTTCGATTAAGGCGCGGACGCTATCTAC Direct Loss 0.95287533038516 0 0.9199492 0.8047602 prediction 0.90575066077032 Functional Loss - UQCR10 ENSG00000184076 CDS Human protein_coding chr22:30163499 chr22:30163499 stopgain 0.999 0 21 hm5C_associated_SNPs_49378 0 0 1 0 2 UQCR10 chr22:30163596 5'GT 30163596 Upstream 98bp
chr8 37963239 37963239 1 + C T rs2073351 37963239 + 37963219 37963259 41 CCGACAGTTGAGCCCAGTTCCGGGGAGGCTGAAGGCGGGTA CCGACAGTTGAGCCCAGTTCTGGGGAGGCTGAAGGCGGGTA Direct Loss 0.952871945377899 0 0.90964437 0.87157005 prediction 0.905743890755798 Functional Loss - ASH2L ENSG00000129691 CDS Human protein_coding chr8:37963239 chr8:37963239 synonymous SNV . 0 21 hm5C_associated_SNPs_49379 0 0 1 0 1 ASH2L chr8:37963256 5'GT 37963256 Upstream 18bp
chr5 170222290 170222290 1 + C G CESC 170222290 + 170222270 170222310 41 AAGGCAACAAGAGCTTCACTCTGGATGCCCGCCTCGTGGAG AAGGCAACAAGAGCTTCACTGTGGATGCCCGCCTCGTGGAG Direct Loss 0.952870694043291 0 0.52826244 0.2623608 prediction 0.905741388086582 Functional Loss - GABRP ENSG00000094755 CDS Human protein_coding chr5:170222290 chr5:170222290 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_49380 0 0 0 0 1 GABRP chr5:170222212 3'AG 170222212 Downstream 79bp
chr17 42148507 42148507 1 + C T BLCA 42148507 + 42148487 42148527 41 CGTGTGGGCATCGCGGTGCTCTGGATCAGCCTCATCACCGA CGTGTGGGCATCGCGGTGCTTTGGATCAGCCTCATCACCGA Direct Loss 0.952864170633791 0 0.3461992 0.32280153 prediction 0.905728341267582 Functional Loss - G6PC3 ENSG00000141349 CDS Human protein_coding chr17:42148507 chr17:42148507 synonymous SNV . 0 21 hm5C_associated_SNPs_49381 0 0 1 0 1 G6PC3 chr17:42148551 5'GT 42148551 Upstream 45bp
chr4 147561099 147561099 1 + C T UCEC 147561099 + 147561079 147561119 41 GTGGACATCGTCTCCCAGAGCAAGAGCCACCACCACCATCC GTGGACATCGTCTCCCAGAGTAAGAGCCACCACCACCATCC Direct Loss 0.952827510579338 0 0.4564409 0.30023283 prediction 0.905655021158677 Functional Loss - POU4F2 ENSG00000151615 CDS Human protein_coding chr4:147561099 chr4:147561099 synonymous SNV . 0 21 hm5C_associated_SNPs_49385 0 0 0 0 1 POU4F2 chr4:147561019 3'AG 147561019 Downstream 81bp
chr7 74197366 74197366 1 + C T HNSC 74197366 + 74197346 74197386 41 CTCCGAGATGGCTCTGTCCACGGGGGACGTGGTGGAGGTCG CTCCGAGATGGCTCTGTCCATGGGGGACGTGGTGGAGGTCG Direct Loss 0.952824541704158 0 0.8888846 0.7173135 prediction 0.905649083408316 Functional Loss - NCF1 ENSG00000158517 CDS Human protein_coding chr7:74197366 chr7:74197366 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_49386 0 0 0 0 2 NCF1 chr7:74197282 3'AG 74197282 Downstream 85bp
chr7 74197366 74197366 1 + C T HNSC 74197366 + 74197346 74197386 41 CTCCGAGATGGCTCTGTCCACGGGGGACGTGGTGGAGGTCG CTCCGAGATGGCTCTGTCCATGGGGGACGTGGTGGAGGTCG Direct Loss 0.952824541704158 0 0.8888846 0.7173135 prediction 0.905649083408316 Functional Loss - NCF1 ENSG00000158517 CDS Human protein_coding chr7:74197366 chr7:74197366 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_49386 0 0 0 0 2 NCF1 chr7:74197404 5'GT 74197404 Upstream 39bp
chr11 101786106 101786106 1 + C T STAD 101786106 + 101786086 101786126 41 ACAGAGCCCCCCTCGGCCCTCGGGAGAGCGGCGGGCATCAC ACAGAGCCCCCCTCGGCCCTTGGGAGAGCGGCGGGCATCAC Direct Loss 0.952789398793719 0 0.9255496 0.73309666 prediction 0.905578797587438 Functional Loss - CEP126 ENSG00000110318 CDS Human protein_coding chr11:101786106 chr11:101786106 nonsynonymous SNV 0.003 1 21 hm5C_associated_SNPs_49390 0 0 0 0 1 CEP126 chr11:101786143 5'GT 101786143 Upstream 38bp
chr15 69325543 69325543 1 + C A UCEC 69325543 + 69325523 69325563 41 GGCTGGCGGCCAGCGCGCACCGGGACCTCGGCGCCAGCGTC GGCTGGCGGCCAGCGCGCACAGGGACCTCGGCGCCAGCGTC Direct Loss 0.952788777391125 0 0.8937932 0.87718296 prediction 0.90557755478225 Functional Loss - NOX5 ENSG00000255346 CDS Human protein_coding chr15:69325543 chr15:69325543 synonymous SNV . 0 21 hm5C_associated_SNPs_49391 0 0 0 0 1 NOX5 chr15:69325617 5'GT 69325617 Upstream 75bp
chr2 179209024 179209024 1 + C A UCEC 179209024 + 179209004 179209044 41 CACCGTCAGGAAGGGCCACCCGCGAAGGGCCAGTTCAGCAC CACCGTCAGGAAGGGCCACCAGCGAAGGGCCAGTTCAGCAC Direct Loss 0.952773182774081 0 0.44366562 0.1539414 prediction 0.905546365548161 Functional Loss - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179209024 chr2:179209024 synonymous SNV . 0 21 hm5C_associated_SNPs_49393 0 0 0 0 2 OSBPL6 chr2:179209013 3'AG 179209013 Downstream 12bp
chr2 179209024 179209024 1 + C A UCEC 179209024 + 179209004 179209044 41 CACCGTCAGGAAGGGCCACCCGCGAAGGGCCAGTTCAGCAC CACCGTCAGGAAGGGCCACCAGCGAAGGGCCAGTTCAGCAC Direct Loss 0.952773182774081 0 0.44366562 0.1539414 prediction 0.905546365548161 Functional Loss - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179209024 chr2:179209024 synonymous SNV . 0 21 hm5C_associated_SNPs_49393 0 0 0 0 2 OSBPL6 chr2:179209087 5'GT 179209087 Upstream 64bp
chr17 40818365 40818365 1 + C T SKCM 40818365 + 40818345 40818385 41 ACAAGAGCCTGCAGAGGATCCGGGAACGGAAGTTGGCCAAC ACAAGAGCCTGCAGAGGATCTGGGAACGGAAGTTGGCCAAC Direct Loss 0.952765384942294 0 0.8833325 0.64506876 prediction 0.905530769884589 Functional Loss - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40818365 chr17:40818365 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_49395 0 0 1 0 1 TUBG2 chr17:40818341 3'AG 40818341 Downstream 25bp
chr15 65242076 65242076 1 + C G BLCA 65242076 + 65242056 65242096 41 TCTCAGGCACCAGGAGCTATCAGGAGCACGGCCACCGAATG TCTCAGGCACCAGGAGCTATGAGGAGCACGGCCACCGAATG Direct Loss 0.952751460387068 0 0.9406097 0.86554253 prediction 0.905502920774135 Functional Loss - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65242076 chr15:65242076 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_49396 0 0 0 0 1 ANKDD1A chr15:65242062 3'AG 65242062 Downstream 15bp
chr16 66997261 66997261 1 + C T UCEC 66997261 + 66997241 66997281 41 CACAGCCCTGGGAGGGTGTGCGGGATGCCAGCACTGCGCCC CACAGCCCTGGGAGGGTGTGTGGGATGCCAGCACTGCGCCC Direct Loss 0.952718301806189 0 0.9258838 0.9039644 prediction 0.905436603612379 Functional Loss - CES3 ENSG00000172828 CDS Human protein_coding chr16:66997261 chr16:66997261 nonsynonymous SNV 0.067 1 21 hm5C_associated_SNPs_49400 0 0 1 0 1 CES3 chr16:66997286 5'GT 66997286 Upstream 26bp
chr9 114423992 114423992 1 + C A READ 114423992 + 114423972 114424012 41 GAGGCTGGCGTGGAGAGGATCAAGGTGCGGGCCCCGGGTAC GAGGCTGGCGTGGAGAGGATAAAGGTGCGGGCCCCGGGTAC Direct Loss 0.952699362880811 0 0.90110314 0.83945274 prediction 0.905398725761622 Functional Loss - GNG10 ENSG00000242616 CDS Human protein_coding chr9:114423992 chr9:114423992 synonymous SNV . 0 21 hm5C_associated_SNPs_49403 0 0 1 1 1 GNG10 chr9:114423995 5'GT 114423995 Upstream 4bp
chr19 13879421 13879421 1 + C A KIRC 13879421 + 13879401 13879441 41 GGCCGCCTGGAGCATGCCTTCTGCACAGAGACCCGGCCCTA GGCCGCCTGGAGCATGCCTTATGCACAGAGACCCGGCCCTA Direct Loss 0.952681152244231 0 0.51572114 0.5996015 prediction 0.905362304488461 Functional Loss - MRI1 ENSG00000037757 CDS Human protein_coding chr19:13879421 chr19:13879421 nonsynonymous SNV 0.575 2 21 hm5C_associated_SNPs_49407 0 0 1 0 1 MRI1 chr19:13879375 3'AG 13879375 Downstream 47bp
chr16 2042137 2042137 1 + C T GBM 2042137 + 2042117 2042157 41 CCTGCGCCGCCTTCCTGCTGCTCGATGTGCGCTTCCAGCAA CCTGCGCCGCCTTCCTGCTGTTCGATGTGCGCTTCCAGCAA Direct Loss 0.952635939939465 0 0.0900127 0.08543697 prediction 0.905271879878931 Functional Loss - SYNGR3 ENSG00000127561 CDS Human protein_coding chr16:2042137 chr16:2042137 nonsynonymous SNV 0.364 0 21 hm5C_associated_SNPs_49412 0 0 0 0 1 SYNGR3 chr16:2042212 5'GT 2042212 Upstream 76bp
chr7 55955369 55955369 1 + C G rs539438506 55955369 + 55955349 55955389 41 GCCGAAGCGCCCTTTGTCTGCGGAGGTGAGTGCGCGCCGGG GCCGAAGCGCCCTTTGTCTGGGGAGGTGAGTGCGCGCCGGG Direct Loss 0.952627576091873 0 0.9102074 0.893464 prediction 0.905255152183746 Functional Loss - ZNF713 ENSG00000178665;ENSG00000249773 UTR5 Human other chr7:55955369 chr7:55955369 . . 0 21 hm5C_associated_SNPs_49414 0 0 0 0 1 ZNF713 chr7:55955373 5'GT 55955373 Upstream 5bp
chr2 37319356 37319356 1 + C G BLCA 37319356 + 37319336 37319376 41 ATGAAGCTAGAAGGAGATCTCAGAAGAAGCCAGCGAGCCTG ATGAAGCTAGAAGGAGATCTGAGAAGAAGCCAGCGAGCCTG Direct Loss 0.952597902163821 0 0.8417088 0.26420283 prediction 0.905195804327642 Functional Loss - GPATCH11 ENSG00000152133 CDS Human protein_coding chr2:37319356 chr2:37319356 synonymous SNV . 0 21 hm5C_associated_SNPs_49417 0 0 1 0 2 GPATCH11 chr2:37319308 3'AG 37319308 Downstream 49bp
chr2 37319356 37319356 1 + C G BLCA 37319356 + 37319336 37319376 41 ATGAAGCTAGAAGGAGATCTCAGAAGAAGCCAGCGAGCCTG ATGAAGCTAGAAGGAGATCTGAGAAGAAGCCAGCGAGCCTG Direct Loss 0.952597902163821 0 0.8417088 0.26420283 prediction 0.905195804327642 Functional Loss - GPATCH11 ENSG00000152133 CDS Human protein_coding chr2:37319356 chr2:37319356 synonymous SNV . 0 21 hm5C_associated_SNPs_49417 0 0 1 0 2 GPATCH11 chr2:37319398 5'GT 37319398 Upstream 43bp
chr6 167585764 167585764 1 + C G rs186539787 167585764 + 167585744 167585784 41 CCCAGGGAGGACAGCAATGCCGGGGAGATGCCGGTGAGCTG CCCAGGGAGGACAGCAATGCGGGGGAGATGCCGGTGAGCTG Direct Loss 0.952597480398975 0 0.9154911 0.9313555 prediction 0.90519496079795 Functional Loss - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167585764 chr6:167585764 synonymous SNV . 0 21 hm5C_associated_SNPs_49418 0 0 0 0 1 TCP10L2 chr6:167585776 5'GT 167585776 Upstream 13bp
chr14 21458675 21458675 1 + C T UCEC 21458675 + 21458655 21458695 41 CAAACACTGACCAGTTATCTCTGGAGCAGACATTTGCCTGT CAAACACTGACCAGTTATCTTTGGAGCAGACATTTGCCTGT Direct Loss 0.952595325667133 0 0.51840645 0.45274383 prediction 0.905190651334265 Functional Loss - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21458675 chr14:21458675 synonymous SNV . 0 21 hm5C_associated_SNPs_49419 0 0 1 0 2 METTL17 chr14:21458623 3'AG 21458623 Downstream 53bp
chr14 21458675 21458675 1 + C T UCEC 21458675 + 21458655 21458695 41 CAAACACTGACCAGTTATCTCTGGAGCAGACATTTGCCTGT CAAACACTGACCAGTTATCTTTGGAGCAGACATTTGCCTGT Direct Loss 0.952595325667133 0 0.51840645 0.45274383 prediction 0.905190651334265 Functional Loss - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21458675 chr14:21458675 synonymous SNV . 0 21 hm5C_associated_SNPs_49419 0 0 1 0 2 METTL17 chr14:21458757 5'GT 21458757 Upstream 83bp
chr5 157161639 157161639 1 + C T UCEC 157161639 + 157161619 157161659 41 CCAGCTATGTGTTTTATTGGCGGGATTACTTTGAGGACCAG CCAGCTATGTGTTTTATTGGTGGGATTACTTTGAGGACCAG Direct Loss 0.95256028825452 0 0.89987636 0.55760765 prediction 0.90512057650904 Functional Loss - THG1L ENSG00000113272;ENSG00000268432 CDS Human other chr5:157161639 chr5:157161639 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_49425 0 0 1 0 1 THG1L chr5:157161584 3'AG 157161584 Downstream 56bp
chr14 104199060 104199060 1 + C T STAD 104199060 + 104199040 104199080 41 GTGGAGGACGTGACTGTGGGCAGGAGGCAGGCGGTGGCGTG GTGGAGGACGTGACTGTGGGTAGGAGGCAGGCGGTGGCGTG Direct Loss 0.952521343892261 0 0.8819536 0.84714335 prediction 0.905042687784521 Functional Loss - ZFYVE21 ENSG00000100711 CDS Human protein_coding chr14:104199060 chr14:104199060 synonymous SNV . 0 21 hm5C_associated_SNPs_49428 0 0 1 0 1 ZFYVE21 chr14:104199099 5'GT 104199099 Upstream 40bp
chr16 30199820 30199820 1 + C T HNSC 30199820 + 30199800 30199840 41 GCTACGTACCCCCAAAGAGCCGGGAGCTGAGGGTCAACCGG GCTACGTACCCCCAAAGAGCTGGGAGCTGAGGGTCAACCGG Direct Loss 0.952518665128641 0 0.95748377 0.93913406 prediction 0.905037330257282 Functional Loss - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30199820 chr16:30199820 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_49430 0 0 0 0 1 CORO1A chr16:30199897 5'GT 30199897 Upstream 78bp
chr12 52284460 52284460 1 + C T COAD 52284460 + 52284440 52284480 41 TCGACACCGTGTGGAGGATTCGGCAGCTGCTGAGGCGGCCC TCGACACCGTGTGGAGGATTTGGCAGCTGCTGAGGCGGCCC Direct Loss 0.95249608935212 0 0.7721658 0.45456332 prediction 0.90499217870424 Functional Loss - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52284460 chr12:52284460 nonsynonymous SNV 0.881 4 21 hm5C_associated_SNPs_49432 0 0 0 0 1 ANKRD33 chr12:52284368 3'AG 52284368 Downstream 93bp
chr19 855638 855638 1 + C A rs146878885 855638 + 855618 855658 41 CAGGGACGCCGCCTGGGCAACGGGGTGCAGTGCCTGGCCAT CAGGGACGCCGCCTGGGCAAAGGGGTGCAGTGCCTGGCCAT Direct Loss 0.952453279964861 0 0.9143367 0.87991095 prediction 0.904906559929723 Functional Loss - ELANE ENSG00000197561 CDS Human protein_coding chr19:855638 chr19:855638 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_49434 0 0 0 0 1 ELANE chr19:855564 3'AG 855564 Downstream 75bp
chr13 40229938 40229938 1 + C T UCEC 40229938 + 40229918 40229958 41 GGCCTCAACAATGGGGCAGGCGGGACCTCGGCGACGACCTG GGCCTCAACAATGGGGCAGGTGGGACCTCGGCGACGACCTG Direct Loss 0.95243481492759 0 0.90435684 0.89407694 prediction 0.904869629855179 Functional Loss - COG6 ENSG00000133103 CDS Human protein_coding chr13:40229938 chr13:40229938 synonymous SNV . 0 21 hm5C_associated_SNPs_49438 0 0 1 0 1 COG6 chr13:40230016 5'GT 40230016 Upstream 79bp
chr1 32050855 32050855 1 + C T CESC 32050855 + 32050835 32050875 41 GAGCCATGGGTCGGGGCAAGCGCCAGGCCACTGCCCACTGC GAGCCATGGGTCGGGGCAAGTGCCAGGCCACTGCCCACTGC Direct Loss 0.952419571673798 0 0.51428634 0.33937788 prediction 0.904839143347595 Functional Loss - TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32050855 chr1:32050855 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_49442 0 0 1 0 1 TINAGL1 chr1:32050941 5'GT 32050941 Upstream 87bp
chr19 39589701 39589701 1 + C A STAD 39589701 + 39589681 39589721 41 GTCTGGCTGTGTTTGGAGACCTGGGGGCTGACAACCCGAAG GTCTGGCTGTGTTTGGAGACATGGGGGCTGACAACCCGAAG Direct Loss 0.95241613212144 0 0.87216306 0.8782898 prediction 0.90483226424288 Functional Loss - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39589701 chr19:39589701 nonsynonymous SNV 0.992 1 21 hm5C_associated_SNPs_49443 0 0 0 0 1 ACP7 chr19:39589782 5'GT 39589782 Upstream 82bp
chr16 28962631 28962631 1 + C T rs564246714 28962631 + 28962611 28962651 41 AGGGGAGGACAGGCGGCCCGCAGGACCCCCGCGGGAGCCGG AGGGGAGGACAGGCGGCCCGTAGGACCCCCGCGGGAGCCGG Direct Loss 0.952345309236073 0 0.76679325 0.43546426 prediction 0.904690618472146 Functional Loss - NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28962631 chr16:28962631 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_49449 0 0 1 0 1 NFATC2IP chr16:28962719 5'GT 28962719 Upstream 89bp
chr15 75044539 75044539 1 + C A STAD 75044539 + 75044519 75044559 41 CCTACTTGGAGGCCTTCATCCTGGAGACCTTCCGACACTCC CCTACTTGGAGGCCTTCATCATGGAGACCTTCCGACACTCC Direct Loss 0.952332465530539 0 0.83441114 0.9199537 prediction 0.904664931061078 Functional Loss - CYP1A2 ENSG00000140505 CDS Human protein_coding chr15:75044539 chr15:75044539 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_49451 0 0 0 0 2 CYP1A2 chr15:75044465 3'AG 75044465 Downstream 75bp
chr15 75044539 75044539 1 + C A STAD 75044539 + 75044519 75044559 41 CCTACTTGGAGGCCTTCATCCTGGAGACCTTCCGACACTCC CCTACTTGGAGGCCTTCATCATGGAGACCTTCCGACACTCC Direct Loss 0.952332465530539 0 0.83441114 0.9199537 prediction 0.904664931061078 Functional Loss - CYP1A2 ENSG00000140505 CDS Human protein_coding chr15:75044539 chr15:75044539 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_49451 0 0 0 0 2 CYP1A2 chr15:75044588 5'GT 75044588 Upstream 50bp
chr11 71932097 71932097 1 + C T SKCM 71932097 + 71932077 71932117 41 CCAACCTGGGGCCCTGGATCCAGCAGGTAGGGTGTCTCCCC CCAACCTGGGGCCCTGGATCTAGCAGGTAGGGTGTCTCCCC Direct Loss 0.952325742787654 0 0.81651413 0.56731313 prediction 0.904651485575307 Functional Loss - FOLR2 ENSG00000165457 CDS Human protein_coding chr11:71932097 chr11:71932097 stopgain 0.955 0 21 hm5C_associated_SNPs_49453 0 0 0 0 1 FOLR2 chr11:71932102 5'GT 71932102 Upstream 6bp
chrX 79286015 79286015 1 + C T HNSC 79286015 + 79285995 79286035 41 AGGTGGAAGCAGTGGCTCATCTCCAGTGACCTCTAGTGGAG AGGTGGAAGCAGTGGCTCATTTCCAGTGACCTCTAGTGGAG Direct Loss 0.952307905840423 0 0.954785 0.22551128 prediction 0.904615811680847 Functional Loss - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79286015 chrX:79286015 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_49455 0 0 0 0 1 TBX22 chrX:79285997 3'AG 79285997 Downstream 19bp
chr1 32655677 32655677 1 + C T UCEC 32655677 + 32655657 32655697 41 AAGAAGGTGTGCAGCGGGCCCGGGAGGAGGAGGAGAAGCGC AAGAAGGTGTGCAGCGGGCCTGGGAGGAGGAGGAGAAGCGC Direct Loss 0.952295045406061 0 0.90292776 0.8752878 prediction 0.904590090812123 Functional Loss - TXLNA ENSG00000084652 CDS Human protein_coding chr1:32655677 chr1:32655677 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_49456 0 0 1 0 1 TXLNA chr1:32655656 3'AG 32655656 Downstream 22bp
chr7 140380866 140380866 1 + C T ESCA 140380866 + 140380846 140380886 41 GTGTGCCTGTGTCCAGTTACCAGCAGGCAGGAATTCCCGTG GTGTGCCTGTGTCCAGTTACTAGCAGGCAGGAATTCCCGTG Direct Loss 0.952275030482351 0 0.43636814 0.3289734 prediction 0.904550060964702 Functional Loss - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140380866 chr7:140380866 stopgain 1.000 1 21 hm5C_associated_SNPs_49458 0 0 1 0 2 ADCK2 chr7:140380842 3'AG 140380842 Downstream 25bp
chr7 140380866 140380866 1 + C T ESCA 140380866 + 140380846 140380886 41 GTGTGCCTGTGTCCAGTTACCAGCAGGCAGGAATTCCCGTG GTGTGCCTGTGTCCAGTTACTAGCAGGCAGGAATTCCCGTG Direct Loss 0.952275030482351 0 0.43636814 0.3289734 prediction 0.904550060964702 Functional Loss - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140380866 chr7:140380866 stopgain 1.000 1 21 hm5C_associated_SNPs_49458 0 0 1 0 2 ADCK2 chr7:140380937 5'GT 140380937 Upstream 72bp
chr17 80525974 80525974 1 + C A BLCA 80525974 + 80525954 80525994 41 CCCCCGGGGAGCGGGGTCTTCAGGGTACAAGGTGGGCCGAG CCCCCGGGGAGCGGGGTCTTAAGGGTACAAGGTGGGCCGAG Direct Loss 0.952250688719019 0 0.9392226 0.9303805 prediction 0.904501377438038 Functional Loss - FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80525974 chr17:80525974 stopgain 0.998 1 21 hm5C_associated_SNPs_49460 0 0 1 0 1 FOXK2 chr17:80525930 3'AG 80525930 Downstream 45bp
chr22 43435822 43435822 1 - G A LUSC 43435822 - 43435802 43435842 41 GGGGCCCAGAGCAGGCCGATCGAGAGACTCGGGGAGAGCGG GGGGCCCAGAGCAGGCCGATTGAGAGACTCGGGGAGAGCGG Direct Loss 0.952233830513521 0 0.9216577 0.91437733 prediction 0.904467661027041 Functional Loss - TTLL1 ENSG00000100271 CDS Human protein_coding chr22:43435822 chr22:43435822 nonsynonymous SNV 0.030 0 21 hm5C_associated_SNPs_49461 0 0 0 0 1 TTLL1 chr22:43435911 3'AG 43435911 Downstream 90bp
chr17 21075495 21075495 1 + C G LUAD 21075495 + 21075475 21075515 41 GGTGATCACAGGCGCCACCTCAGGGCTGGGCAAAGGTGGGT GGTGATCACAGGCGCCACCTGAGGGCTGGGCAAAGGTGGGT Direct Loss 0.952225873008509 0 0.9105354 0.8901245 prediction 0.904451746017018 Functional Loss - DHRS7B ENSG00000109016 CDS Human protein_coding chr17:21075495 chr17:21075495 stopgain 0.870 1 21 hm5C_associated_SNPs_49464 0 0 1 0 1 DHRS7B chr17:21075509 5'GT 21075509 Upstream 15bp
chr6 117246757 117246757 1 + C A LUAD 117246757 + 117246737 117246777 41 CCCTCTGCCATCCAGTCAACCTGGAGGCCTAGGCCCTGCTC CCCTCTGCCATCCAGTCAACATGGAGGCCTAGGCCCTGCTC Direct Loss 0.952222037353852 0 0.8027566 0.36037937 prediction 0.904444074707705 Functional Loss - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117246757 chr6:117246757 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_49465 0 0 0 0 1 RFX6 chr6:117246822 5'GT 117246822 Upstream 66bp
chr22 18604277 18604277 1 + C T UCEC 18604277 + 18604257 18604297 41 ATCAGTCCACGTGGGCCAAGCGGGAGTTCAGATTGGCAATG ATCAGTCCACGTGGGCCAAGTGGGAGTTCAGATTGGCAATG Direct Loss 0.95221875904921 0 0.89238745 0.61045766 prediction 0.904437518098421 Functional Loss - TUBA8 ENSG00000183785;ENSG00000215193 CDS Human other chr22:18604277 chr22:18604277 nonsynonymous SNV 0.978 4 21 hm5C_associated_SNPs_49466 0 0 0 0 1 TUBA8 chr22:18604246 3'AG 18604246 Downstream 32bp
chr14 23848306 23848306 1 + C A STAD 23848306 + 23848286 23848326 41 CCTTTGCAGCTGTGACCTCCCGGGACGGAGCTGCCATTGCT CCTTTGCAGCTGTGACCTCCAGGGACGGAGCTGCCATTGCT Direct Loss 0.952170063192491 0 0.92807007 0.87233543 prediction 0.904340126384982 Functional Loss - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23848306 chr14:23848306 synonymous SNV . 0 21 hm5C_associated_SNPs_49469 0 0 0 0 2 CMTM5 chr14:23848240 3'AG 23848240 Downstream 67bp
chr14 23848306 23848306 1 + C A STAD 23848306 + 23848286 23848326 41 CCTTTGCAGCTGTGACCTCCCGGGACGGAGCTGCCATTGCT CCTTTGCAGCTGTGACCTCCAGGGACGGAGCTGCCATTGCT Direct Loss 0.952170063192491 0 0.92807007 0.87233543 prediction 0.904340126384982 Functional Loss - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23848306 chr14:23848306 synonymous SNV . 0 21 hm5C_associated_SNPs_49469 0 0 0 0 2 CMTM5 chr14:23848332 5'GT 23848332 Upstream 27bp
chr11 59860922 59860922 1 + C T rs35033981 59860922 + 59860902 59860942 41 CAGCAGCATAGCTGGGGGAACGGGAATTACCATCCTGATCA CAGCAGCATAGCTGGGGGAATGGGAATTACCATCCTGATCA Direct Loss 0.952157540465749 0 0.8988538 0.88039696 prediction 0.904315080931499 Functional Loss - MS4A2 ENSG00000149534 CDS Human protein_coding chr11:59860922 chr11:59860922 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_49471 0 0 0 0 1 MS4A2 chr11:59860873 3'AG 59860873 Downstream 50bp
chrX 55102526 55102526 1 + C A UCEC 55102526 + 55102506 55102546 41 CCTCAGAAAGAGGAAATGACCAAGAGTCTTCCCAGCCAGTT CCTCAGAAAGAGGAAATGACAAAGAGTCTTCCCAGCCAGTT Direct Loss 0.952157526174247 0 0.4449398 0.2509476 prediction 0.904315052348494 Functional Loss - PAGE2B ENSG00000238269 CDS Human protein_coding chrX:55102526 chrX:55102526 nonsynonymous SNV 0.013 0 21 hm5C_associated_SNPs_49472 0 0 0 0 1 PAGE2B chrX:55102558 5'GT 55102558 Upstream 33bp
chr21 45213238 45213238 1 + C T HNSC 45213238 + 45213218 45213258 41 CCTTCTGGCAGACCATGAATCGCGAGTGGACGGGCATTGAC CCTTCTGGCAGACCATGAATTGCGAGTGGACGGGCATTGAC Direct Loss 0.952134512165486 0 0.9246253 0.39958936 prediction 0.904269024330971 Functional Loss - RRP1 ENSG00000160214 CDS Human protein_coding chr21:45213238 chr21:45213238 nonsynonymous SNV 0.409 3 21 hm5C_associated_SNPs_49473 0 0 1 0 2 RRP1 chr21:45213200 3'AG 45213200 Downstream 39bp
chr21 45213238 45213238 1 + C T HNSC 45213238 + 45213218 45213258 41 CCTTCTGGCAGACCATGAATCGCGAGTGGACGGGCATTGAC CCTTCTGGCAGACCATGAATTGCGAGTGGACGGGCATTGAC Direct Loss 0.952134512165486 0 0.9246253 0.39958936 prediction 0.904269024330971 Functional Loss - RRP1 ENSG00000160214 CDS Human protein_coding chr21:45213238 chr21:45213238 nonsynonymous SNV 0.409 3 21 hm5C_associated_SNPs_49473 0 0 1 0 2 RRP1 chr21:45213285 5'GT 45213285 Upstream 48bp
chr11 61249334 61249334 1 + C T UCEC 61249334 + 61249314 61249354 41 CCCTTATGTGAAGATGAGTTCGGGGGGCTACACGGACCCCC CCCTTATGTGAAGATGAGTTTGGGGGGCTACACGGACCCCC Direct Loss 0.95211692380144 0 0.94674057 0.93396366 prediction 0.904233847602881 Functional Loss - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61249334 chr11:61249334 nonsynonymous SNV 0.979 2 21 hm5C_associated_SNPs_49477 0 0 0 0 2 PPP1R32 chr11:61249254 3'AG 61249254 Downstream 81bp
chr11 61249334 61249334 1 + C T UCEC 61249334 + 61249314 61249354 41 CCCTTATGTGAAGATGAGTTCGGGGGGCTACACGGACCCCC CCCTTATGTGAAGATGAGTTTGGGGGGCTACACGGACCCCC Direct Loss 0.95211692380144 0 0.94674057 0.93396366 prediction 0.904233847602881 Functional Loss - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61249334 chr11:61249334 nonsynonymous SNV 0.979 2 21 hm5C_associated_SNPs_49477 0 0 0 0 2 PPP1R32 chr11:61249390 5'GT 61249390 Upstream 57bp
chr1 26517266 26517266 1 + C T SKCM 26517266 + 26517246 26517286 41 CTCCCCTGCAGAGTACCATTCACGAGTCCTACGGTCGGCCA CTCCCCTGCAGAGTACCATTTACGAGTCCTACGGTCGGCCA Direct Loss 0.952089232315166 0 0.53232974 0.46190402 prediction 0.904178464630331 Functional Loss - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26517266 chr1:26517266 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_49481 0 0 0 0 1 CATSPER4 chr1:26517331 5'GT 26517331 Upstream 66bp
chr19 39691093 39691093 1 + C T SKCM 39691093 + 39691073 39691113 41 CCACGTGGCCCCCCGAACTTCTGGGAGAGGACCCCCTGGCC CCACGTGGCCCCCCGAACTTTTGGGAGAGGACCCCCTGGCC Direct Loss 0.952063864779536 0 0.8354922 0.47364235 prediction 0.904127729559071 Functional Loss - NCCRP1 ENSG00000188505 CDS Human protein_coding chr19:39691093 chr19:39691093 nonsynonymous SNV 0.080 0 21 hm5C_associated_SNPs_49484 0 0 0 0 1 NCCRP1 chr19:39691124 5'GT 39691124 Upstream 32bp
chrX 153994567 153994567 1 + C T UCEC 153994567 + 153994547 153994587 41 CCTGGATTCGACGGATACTTCGGGTGGAGAAGACAGGGCAC CCTGGATTCGACGGATACTTTGGGTGGAGAAGACAGGGCAC Direct Loss 0.952055747006441 0 0.92825544 0.8893933 prediction 0.904111494012881 Functional Loss - DKC1 ENSG00000130826 CDS Human protein_coding chrX:153994567 chrX:153994567 nonsynonymous SNV 0.722 5 21 hm5C_associated_SNPs_49486 0 0 1 0 1 DKC1 chrX:153994491 3'AG 153994491 Downstream 77bp
chr2 106497816 106497816 1 + C T UCEC 106497816 + 106497796 106497836 41 CGCGCAGGAAGACCAGCGCGCGGGATGCGTCCCCCACGCCC CGCGCAGGAAGACCAGCGCGTGGGATGCGTCCCCCACGCCC Direct Loss 0.95199663577078 0 0.9540899 0.9193907 prediction 0.90399327154156 Functional Loss - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106497816 chr2:106497816 nonsynonymous SNV 0.596 3 21 hm5C_associated_SNPs_49492 0 0 0 0 1 NCK2 chr2:106497784 3'AG 106497784 Downstream 33bp
chr2 238475717 238475717 1 + C T UCEC 238475717 + 238475697 238475737 41 GGCCTGTGGGCCGCTTCGGTCGGAGGAGGGCAACCCTGGGG GGCCTGTGGGCCGCTTCGGTTGGAGGAGGGCAACCCTGGGG Direct Loss 0.951966149649258 0 0.9479769 0.92629004 prediction 0.903932299298515 Functional Loss - PRLH ENSG00000071677 CDS Human protein_coding chr2:238475717 chr2:238475717 nonsynonymous SNV 0.921 3 21 hm5C_associated_SNPs_49495 0 0 0 0 1 PRLH chr2:238475655 3'AG 238475655 Downstream 63bp
chr19 15793238 15793238 1 + C T rs144258147 15793238 + 15793218 15793258 41 CCTCAGAGGGCAGCAGTTGTCTGGACATGTTTGAGCACATC CCTCAGAGGGCAGCAGTTGTTTGGACATGTTTGAGCACATC Direct Loss 0.951951877674127 0 0.19307059 0.20325321 prediction 0.903903755348255 Functional Loss - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15793238 chr19:15793238 synonymous SNV . 0 21 hm5C_associated_SNPs_49497 0 0 0 0 2 CYP4F12 chr19:15793199 3'AG 15793199 Downstream 40bp
chr19 15793238 15793238 1 + C T rs144258147 15793238 + 15793218 15793258 41 CCTCAGAGGGCAGCAGTTGTCTGGACATGTTTGAGCACATC CCTCAGAGGGCAGCAGTTGTTTGGACATGTTTGAGCACATC Direct Loss 0.951951877674127 0 0.19307059 0.20325321 prediction 0.903903755348255 Functional Loss - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15793238 chr19:15793238 synonymous SNV . 0 21 hm5C_associated_SNPs_49497 0 0 0 0 2 CYP4F12 chr19:15793320 5'GT 15793320 Upstream 83bp
chr19 33635774 33635774 1 + C A LUAD 33635774 + 33635754 33635794 41 CGGTGGACGGTTCTGTGGTTCGCGATTTTGAGCACAGGCCC CGGTGGACGGTTCTGTGGTTAGCGATTTTGAGCACAGGCCC Direct Loss 0.951923377691791 0 0.20534402 0.26533574 prediction 0.903846755383583 Functional Loss - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33635774 chr19:33635774 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_49500 0 0 0 0 2 WDR88 chr19:33635750 3'AG 33635750 Downstream 25bp
chr19 33635774 33635774 1 + C A LUAD 33635774 + 33635754 33635794 41 CGGTGGACGGTTCTGTGGTTCGCGATTTTGAGCACAGGCCC CGGTGGACGGTTCTGTGGTTAGCGATTTTGAGCACAGGCCC Direct Loss 0.951923377691791 0 0.20534402 0.26533574 prediction 0.903846755383583 Functional Loss - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33635774 chr19:33635774 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_49500 0 0 0 0 2 WDR88 chr19:33635838 5'GT 33635838 Upstream 65bp
chr5 131607069 131607069 1 + C T UCEC 131607069 + 131607049 131607089 41 GCTCCGAGGTGTACAGGATGCTGCGGGAGCCAGCCGAGCCC GCTCCGAGGTGTACAGGATGTTGCGGGAGCCAGCCGAGCCC Direct Loss 0.951847911212691 0 0.4672003 0.54210633 prediction 0.903695822425382 Functional Loss - PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131607069 chr5:131607069 synonymous SNV . 0 21 hm5C_associated_SNPs_49506 0 0 1 0 2 PDLIM4 chr5:131606996 3'AG 131606996 Downstream 74bp
chr5 131607069 131607069 1 + C T UCEC 131607069 + 131607049 131607089 41 GCTCCGAGGTGTACAGGATGCTGCGGGAGCCAGCCGAGCCC GCTCCGAGGTGTACAGGATGTTGCGGGAGCCAGCCGAGCCC Direct Loss 0.951847911212691 0 0.4672003 0.54210633 prediction 0.903695822425382 Functional Loss - PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131607069 chr5:131607069 synonymous SNV . 0 21 hm5C_associated_SNPs_49506 0 0 1 0 2 PDLIM4 chr5:131607159 5'GT 131607159 Upstream 91bp
chr22 29627634 29627634 1 + C T UCEC 29627634 + 29627614 29627654 41 ACCGGCCCCAAGGGAGATGCCGGCAGTCGGGGCCCAATGGG ACCGGCCCCAAGGGAGATGCTGGCAGTCGGGGCCCAATGGG Direct Loss 0.951844328022634 0 0.9119241 0.8621255 prediction 0.903688656045267 Functional Loss - EMID1 ENSG00000186998 CDS Human protein_coding chr22:29627634 chr22:29627634 synonymous SNV . 0 21 hm5C_associated_SNPs_49507 0 0 1 0 2 EMID1 chr22:29627582 3'AG 29627582 Downstream 53bp
chr22 29627634 29627634 1 + C T UCEC 29627634 + 29627614 29627654 41 ACCGGCCCCAAGGGAGATGCCGGCAGTCGGGGCCCAATGGG ACCGGCCCCAAGGGAGATGCTGGCAGTCGGGGCCCAATGGG Direct Loss 0.951844328022634 0 0.9119241 0.8621255 prediction 0.903688656045267 Functional Loss - EMID1 ENSG00000186998 CDS Human protein_coding chr22:29627634 chr22:29627634 synonymous SNV . 0 21 hm5C_associated_SNPs_49507 0 0 1 0 2 EMID1 chr22:29627671 5'GT 29627671 Upstream 38bp
chr12 118464799 118464799 1 + C G BLCA 118464799 + 118464779 118464819 41 TCCTGGACTGGATGTTGAATCAAGATTTCACCACAGCCTAC TCCTGGACTGGATGTTGAATGAAGATTTCACCACAGCCTAC Direct Loss 0.951836661071418 0 0.5828427 0.4080518 prediction 0.903673322142836 Functional Loss - RFC5 ENSG00000111445 CDS Human protein_coding chr12:118464799 chr12:118464799 nonsynonymous SNV 0.991 0 21 hm5C_associated_SNPs_49508 0 0 1 0 1 RFC5 chr12:118464823 5'GT 118464823 Upstream 25bp
chr19 44768478 44768478 1 + C A HNSC 44768478 + 44768458 44768498 41 TTTTCCCAGTTCTGCCTTCCCAGGACCCTGCCCTTCCCCAG TTTTCCCAGTTCTGCCTTCCAAGGACCCTGCCCTTCCCCAG Direct Loss 0.951829324301319 0 0.70116216 0.3031088 prediction 0.903658648602639 Functional Loss - ZNF233 ENSG00000159915 CDS Human protein_coding chr19:44768478 chr19:44768478 nonsynonymous SNV 0.009 0 21 hm5C_associated_SNPs_49510 0 0 1 0 2 ZNF233 chr19:44768467 3'AG 44768467 Downstream 12bp
chr19 44768478 44768478 1 + C A HNSC 44768478 + 44768458 44768498 41 TTTTCCCAGTTCTGCCTTCCCAGGACCCTGCCCTTCCCCAG TTTTCCCAGTTCTGCCTTCCAAGGACCCTGCCCTTCCCCAG Direct Loss 0.951829324301319 0 0.70116216 0.3031088 prediction 0.903658648602639 Functional Loss - ZNF233 ENSG00000159915 CDS Human protein_coding chr19:44768478 chr19:44768478 nonsynonymous SNV 0.009 0 21 hm5C_associated_SNPs_49510 0 0 1 0 2 ZNF233 chr19:44768528 5'GT 44768528 Upstream 51bp
chr15 84237393 84237393 1 + C T COAD 84237393 + 84237373 84237413 41 GGGGACTGTATGCTGAAATACGGGAAGGAGCTCGGGGAAGA GGGGACTGTATGCTGAAATATGGGAAGGAGCTCGGGGAAGA Direct Loss 0.951818862756509 0 0.47587302 0.35575643 prediction 0.903637725513018 Functional Loss - SH3GL3 ENSG00000140600 CDS Human protein_coding chr15:84237393 chr15:84237393 synonymous SNV . 0 21 hm5C_associated_SNPs_49512 0 0 1 0 1 SH3GL3 chr15:84237424 5'GT 84237424 Upstream 32bp
chr10 94452231 94452231 1 + C T STAD 94452231 + 94452211 94452251 41 ATCGAGCTGGAGAAGAAATTCGAGACGCAGAAATATCTCTC ATCGAGCTGGAGAAGAAATTTGAGACGCAGAAATATCTCTC Direct Loss 0.951798819348346 0 0.2635951 0.22572246 prediction 0.903597638696693 Functional Loss - HHEX ENSG00000152804 CDS Human protein_coding chr10:94452231 chr10:94452231 synonymous SNV . 0 21 hm5C_associated_SNPs_49516 0 0 1 0 1 HHEX chr10:94452303 5'GT 94452303 Upstream 73bp
chr19 58115732 58115732 1 + C T LUSC 58115732 + 58115712 58115752 41 AGATGCAGAGGCTCCTGTACCGCGATGTGATGCTGGAGAAC AGATGCAGAGGCTCCTGTACTGCGATGTGATGCTGGAGAAC Direct Loss 0.951782786608319 0 0.62997526 0.2982778 prediction 0.903565573216638 Functional Loss - ZNF530 ENSG00000183647 CDS Human protein_coding chr19:58115732 chr19:58115732 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_49517 0 0 0 1 2 ZNF530 chr19:58115645 3'AG 58115645 Downstream 88bp
chr19 58115732 58115732 1 + C T LUSC 58115732 + 58115712 58115752 41 AGATGCAGAGGCTCCTGTACCGCGATGTGATGCTGGAGAAC AGATGCAGAGGCTCCTGTACTGCGATGTGATGCTGGAGAAC Direct Loss 0.951782786608319 0 0.62997526 0.2982778 prediction 0.903565573216638 Functional Loss - ZNF530 ENSG00000183647 CDS Human protein_coding chr19:58115732 chr19:58115732 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_49517 0 0 0 1 2 ZNF530 chr19:58115774 5'GT 58115774 Upstream 43bp
chr4 47034468 47034468 1 + C T UCEC 47034468 + 47034448 47034488 41 GTTGGGATGCGGATCGATGTCGCCAGCATAGACATGGTCTC GTTGGGATGCGGATCGATGTTGCCAGCATAGACATGGTCTC Direct Loss 0.951781444567402 0 0.16553083 0.08153784 prediction 0.903562889134804 Functional Loss - GABRB1 ENSG00000163288 CDS Human protein_coding chr4:47034468 chr4:47034468 synonymous SNV . 0 21 hm5C_associated_SNPs_49518 0 0 0 1 2 GABRB1 chr4:47034434 3'AG 47034434 Downstream 35bp
chr4 47034468 47034468 1 + C T UCEC 47034468 + 47034448 47034488 41 GTTGGGATGCGGATCGATGTCGCCAGCATAGACATGGTCTC GTTGGGATGCGGATCGATGTTGCCAGCATAGACATGGTCTC Direct Loss 0.951781444567402 0 0.16553083 0.08153784 prediction 0.903562889134804 Functional Loss - GABRB1 ENSG00000163288 CDS Human protein_coding chr4:47034468 chr4:47034468 synonymous SNV . 0 21 hm5C_associated_SNPs_49518 0 0 0 1 2 GABRB1 chr4:47034501 5'GT 47034501 Upstream 34bp
chr17 8215940 8215940 1 + C T SKCM 8215940 + 8215920 8215960 41 CCCTCACCGGGAGTGGGTCCCAGGAGAACGGTGCTCCAGGT CCCTCACCGGGAGTGGGTCCTAGGAGAACGGTGCTCCAGGT Direct Loss 0.951781234735257 0 0.9281728 0.88859296 prediction 0.903562469470514 Functional Loss - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8215940 chr17:8215940 stopgain 0.996 0 21 hm5C_associated_SNPs_49519 0 0 0 0 1 ARHGEF15 chr17:8215958 5'GT 8215958 Upstream 19bp
chr10 12131171 12131171 1 + C T LIHC 12131171 + 12131151 12131191 41 CCGTGGCCGTGGGCAAAACTCGCGGCAGGCAGCAGTCTCGC CCGTGGCCGTGGGCAAAACTTGCGGCAGGCAGCAGTCTCGC Direct Loss 0.951771811296643 0 0.92130756 0.87963223 prediction 0.903543622593286 Functional Loss - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12131171 chr10:12131171 nonsynonymous SNV 0.945 4 21 hm5C_associated_SNPs_49521 0 0 1 0 1 DHTKD1 chr10:12131254 5'GT 12131254 Upstream 84bp
chr1 1417625 1417625 1 + C T STAD 1417625 + 1417605 1417645 41 GGGAGAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAG GGGAGAATGCAGACATCATCTGCGAGCAGATCCGCCTGAAG Direct Loss 0.951743800719173 0 0.37296292 0.34029067 prediction 0.903487601438345 Functional Loss - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1417625 chr1:1417625 nonsynonymous SNV 0.673 4 21 hm5C_associated_SNPs_49524 0 0 1 0 1 ATAD3B chr1:1417683 5'GT 1417683 Upstream 59bp
chrX 154444803 154444803 1 + C T UCEC 154444803 + 154444783 154444823 41 TGGCAAAGGAGAAATGGCCACAGGGAATGGGCGGCGGCTCC TGGCAAAGGAGAAATGGCCATAGGGAATGGGCGGCGGCTCC Direct Loss 0.951736689316311 0 0.8698938 0.76727664 prediction 0.903473378632622 Functional Loss - VBP1 ENSG00000155959 CDS Human protein_coding chrX:154444803 chrX:154444803 nonsynonymous SNV 0.053 0 21 hm5C_associated_SNPs_49525 0 0 1 0 1 VBP1 chrX:154444852 5'GT 154444852 Upstream 50bp
chr1 31191784 31191784 1 - G T LUAD 31191784 - 31191764 31191804 41 GTGGTCATCGTGGTGACAGACGGGAGGCCCCAGGACAGCGT GTGGTCATCGTGGTGACAGAAGGGAGGCCCCAGGACAGCGT Direct Loss 0.951728527755547 0 0.83073604 0.70984143 prediction 0.903457055511093 Functional Loss - MATN1 ENSG00000162510 CDS Human protein_coding chr1:31191784 chr1:31191784 nonsynonymous SNV 0.965 4 21 hm5C_associated_SNPs_49526 0 0 0 0 1 MATN1 chr1:31191804 3'AG 31191804 Downstream 21bp
chrX 11783862 11783862 1 + C T CESC 11783862 + 11783842 11783882 41 GAAAAGAGTAGGTTCATTCTCGGGTGCCCCAGGCCGGGGAG GAAAAGAGTAGGTTCATTCTTGGGTGCCCCAGGCCGGGGAG Direct Loss 0.951706411334102 0 0.94497395 0.8990233 prediction 0.903412822668205 Functional Loss - MSL3 ENSG00000005302 CDS Human protein_coding chrX:11783862 chrX:11783862 synonymous SNV . 0 21 hm5C_associated_SNPs_49528 0 0 1 0 1 MSL3 chrX:11783848 3'AG 11783848 Downstream 15bp
chr20 31625415 31625415 1 + C T rs77537428 31625415 + 31625395 31625435 41 ACCATCAAGCTTGCTGATGCCGGGGAGGCCCTCACGTTCCC ACCATCAAGCTTGCTGATGCTGGGGAGGCCCTCACGTTCCC Direct Loss 0.95170616436416 0 0.91942626 0.7150151 prediction 0.903412328728319 Functional Loss - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31625415 chr20:31625415 synonymous SNV . 0 21 hm5C_associated_SNPs_49529 0 0 0 0 1 BPIFB6 chr20:31625368 3'AG 31625368 Downstream 48bp
chr7 106797680 106797680 1 + C T SKCM 106797680 + 106797660 106797700 41 AGTAGAAATCGCTCGATGCTCGCGGGGACAGTACTTTGGAG AGTAGAAATCGCTCGATGCTTGCGGGGACAGTACTTTGGAG Direct Loss 0.951694699630625 0 0.9339063 0.8258951 prediction 0.90338939926125 Functional Loss - PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106797680 chr7:106797680 nonsynonymous SNV 0.516 1 21 hm5C_associated_SNPs_49532 0 0 1 0 1 PRKAR2B chr7:106797769 5'GT 106797769 Upstream 90bp
chr1 160313209 160313209 1 + C T LUSC 160313209 + 160313189 160313229 41 GGCTACGGCAGGGGGTGGCTCTGGGGCTGACCCGGGAAGTC GGCTACGGCAGGGGGTGGCTTTGGGGCTGACCCGGGAAGTC Direct Loss 0.951691320435559 0 0.89533967 0.8912216 prediction 0.903382640871118 Functional Loss - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160313209 chr1:160313209 nonsynonymous SNV 0.993 1 21 hm5C_associated_SNPs_49533 0 0 1 0 1 NCSTN chr1:160313271 5'GT 160313271 Upstream 63bp
chr9 136516770 136516770 1 + C A rs143743431 136516770 + 136516750 136516790 41 CCACAGGCACTGCCTCCCTCCGGGATCCACATCTTCGCCTC CCACAGGCACTGCCTCCCTCAGGGATCCACATCTTCGCCTC Direct Loss 0.951664787026484 0 0.8162476 0.91687393 prediction 0.903329574052969 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136516770 chr9:136516770 synonymous SNV . 0 21 hm5C_associated_SNPs_49536 0 0 0 0 1 DBH chr9:136516756 3'AG 136516756 Downstream 15bp
chr2 88825182 88825182 1 + C T STAD 88825182 + 88825162 88825202 41 CATGGCAGGTGTGAAATACCCGGGACAGGTGAGTGATGTGG CATGGCAGGTGTGAAATACCTGGGACAGGTGAGTGATGTGG Direct Loss 0.951631801835537 0 0.49025458 0.35887986 prediction 0.903263603671074 Functional Loss - TEX37 ENSG00000172073 CDS Human protein_coding chr2:88825182 chr2:88825182 nonsynonymous SNV 0.029 3 21 hm5C_associated_SNPs_49540 0 0 0 0 2 TEX37 chr2:88825153 3'AG 88825153 Downstream 30bp
chr2 88825182 88825182 1 + C T STAD 88825182 + 88825162 88825202 41 CATGGCAGGTGTGAAATACCCGGGACAGGTGAGTGATGTGG CATGGCAGGTGTGAAATACCTGGGACAGGTGAGTGATGTGG Direct Loss 0.951631801835537 0 0.49025458 0.35887986 prediction 0.903263603671074 Functional Loss - TEX37 ENSG00000172073 CDS Human protein_coding chr2:88825182 chr2:88825182 nonsynonymous SNV 0.029 3 21 hm5C_associated_SNPs_49540 0 0 0 0 2 TEX37 chr2:88825189 5'GT 88825189 Upstream 8bp
chr11 10794137 10794137 1 + C T COAD 10794137 + 10794117 10794157 41 GCAAACAAGATGAAGAAGAGCGGGAGCTGCGGGCCAAGCAA GCAAACAAGATGAAGAAGAGTGGGAGCTGCGGGCCAAGCAA Direct Loss 0.951608778870491 0 0.92072594 0.908285 prediction 0.903217557740981 Functional Loss - CTR9 ENSG00000198730 CDS Human protein_coding chr11:10794137 chr11:10794137 nonsynonymous SNV 0.961 3 21 hm5C_associated_SNPs_49542 0 0 1 0 2 CTR9 chr11:10794067 3'AG 10794067 Downstream 71bp
chr11 10794137 10794137 1 + C T COAD 10794137 + 10794117 10794157 41 GCAAACAAGATGAAGAAGAGCGGGAGCTGCGGGCCAAGCAA GCAAACAAGATGAAGAAGAGTGGGAGCTGCGGGCCAAGCAA Direct Loss 0.951608778870491 0 0.92072594 0.908285 prediction 0.903217557740981 Functional Loss - CTR9 ENSG00000198730 CDS Human protein_coding chr11:10794137 chr11:10794137 nonsynonymous SNV 0.961 3 21 hm5C_associated_SNPs_49542 0 0 1 0 2 CTR9 chr11:10794202 5'GT 10794202 Upstream 66bp
chr12 81111245 81111245 1 + C T LUSC 81111245 + 81111225 81111265 41 TCCGCTACATCGAGAGCCTGCAGGAGTTGCTGAGAGAGCAG TCCGCTACATCGAGAGCCTGTAGGAGTTGCTGAGAGAGCAG Direct Loss 0.951603465603382 0 0.91234624 0.8886777 prediction 0.903206931206764 Functional Loss - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81111245 chr12:81111245 stopgain 0.998 1 21 hm5C_associated_SNPs_49543 0 0 0 0 1 MYF5 chr12:81111343 5'GT 81111343 Upstream 99bp
chr18 47093864 47093864 1 + C T rs2000813 47093864 + 47093844 47093884 41 ACTCGTGTCAGCCCTGCACACAAGAGAGAAAGACGCCAATG ACTCGTGTCAGCCCTGCACATAAGAGAGAAAGACGCCAATG Direct Loss 0.951596163908035 0 0.40027243 0.21437737 prediction 0.90319232781607 Functional Loss - LIPG ENSG00000101670 CDS Human protein_coding chr18:47093864 chr18:47093864 nonsynonymous SNV 0.037 1 21 hm5C_associated_SNPs_49544 0 1 0 0 1 LIPG chr18:47093812 3'AG 47093812 Downstream 53bp
chr11 3423884 3423884 1 + C T SARC 3423884 + 3423864 3423904 41 AGCGGTCGGCCTTCATGGAGCGGGATGCTGGGAGCGGGCTG AGCGGTCGGCCTTCATGGAGTGGGATGCTGGGAGCGGGCTG Direct Loss 0.951548427231155 0 0.901356 0.772387 prediction 0.90309685446231 Functional Loss - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3423884 chr11:3423884 . . 0 21 hm5C_associated_SNPs_49555 0 0 0 0 2 TSSC2 chr11:3423843 3'AG 3423843 Downstream 42bp
chr11 3423884 3423884 1 + C T SARC 3423884 + 3423864 3423904 41 AGCGGTCGGCCTTCATGGAGCGGGATGCTGGGAGCGGGCTG AGCGGTCGGCCTTCATGGAGTGGGATGCTGGGAGCGGGCTG Direct Loss 0.951548427231155 0 0.901356 0.772387 prediction 0.90309685446231 Functional Loss - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3423884 chr11:3423884 . . 0 21 hm5C_associated_SNPs_49555 0 0 0 0 2 TSSC2 chr11:3423959 5'GT 3423959 Upstream 76bp
chr11 64329843 64329843 1 + C T ESCA 64329843 + 64329823 64329863 41 GCGGCCTGGCCTTTGCCCTGCGGGACTGGAGGACTCTCCAG GCGGCCTGGCCTTTGCCCTGTGGGACTGGAGGACTCTCCAG Direct Loss 0.951536506235383 0 0.89845407 0.6924619 prediction 0.903073012470766 Functional Loss - SLC22A11 ENSG00000168065 CDS Human protein_coding chr11:64329843 chr11:64329843 nonsynonymous SNV 0.450 3 21 hm5C_associated_SNPs_49556 0 0 0 0 1 SLC22A11 chr11:64329907 5'GT 64329907 Upstream 65bp
chr17 46972581 46972581 1 + C T GBM 46972581 + 46972561 46972601 41 TCCAGACCAGTGTTGTCTCCCGGGACATTGACACAGCAGCC TCCAGACCAGTGTTGTCTCCTGGGACATTGACACAGCAGCC Direct Loss 0.951510808938926 0 0.8530924 0.39765787 prediction 0.903021617877851 Functional Loss - ATP5G1 ENSG00000159199 CDS Human protein_coding chr17:46972581 chr17:46972581 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_49557 0 0 1 0 1 ATP5G1 chr17:46972518 3'AG 46972518 Downstream 64bp
chr21 46363700 46363700 1 + C T BLCA 46363700 + 46363680 46363720 41 GTGAGGAGTGTCACTTCCGTCAGGAGAGGTGAGGCAGGCTC GTGAGGAGTGTCACTTCCGTTAGGAGAGGTGAGGCAGGCTC Direct Loss 0.951507038345524 0 0.9074169 0.7853532 prediction 0.903014076691047 Functional Loss - FAM207A ENSG00000160256 CDS Human protein_coding chr21:46363700 chr21:46363700 synonymous SNV . 0 21 hm5C_associated_SNPs_49558 0 0 1 0 2 FAM207A chr21:46363707 5'GT 46363707 Upstream 8bp
chr21 46363700 46363700 1 + C T BLCA 46363700 + 46363680 46363720 41 GTGAGGAGTGTCACTTCCGTCAGGAGAGGTGAGGCAGGCTC GTGAGGAGTGTCACTTCCGTTAGGAGAGGTGAGGCAGGCTC Direct Loss 0.951507038345524 0 0.9074169 0.7853532 prediction 0.903014076691047 Functional Loss - FAM207A ENSG00000160256 CDS Human protein_coding chr21:46363700 chr21:46363700 synonymous SNV . 0 21 hm5C_associated_SNPs_49558 0 0 1 0 2 FAM207A chr21:46363752 5'GT 46363752 Upstream 53bp
chr8 54852163 54852163 1 + C T COAD 54852163 + 54852143 54852183 41 GATCAGAGCGGATGGAGATGCGGAAGCGGCAGATGCCCGCC GATCAGAGCGGATGGAGATGTGGAAGCGGCAGATGCCCGCC Direct Loss 0.951499310710255 0 0.88998914 0.85280424 prediction 0.90299862142051 Functional Loss - RGS20 ENSG00000147509 CDS Human protein_coding chr8:54852163 chr8:54852163 nonsynonymous SNV 0.761 3 21 hm5C_associated_SNPs_49559 0 0 0 0 1 RGS20 chr8:54852136 3'AG 54852136 Downstream 28bp
chr2 208576731 208576731 1 + C T rs61747448 208576731 + 208576711 208576751 41 GACATCTACGAGGCGGTGTCCGGGGACGCGGTGGCGGTAGC GACATCTACGAGGCGGTGTCTGGGGACGCGGTGGCGGTAGC Direct Loss 0.951498791208365 0 0.92299867 0.90470296 prediction 0.90299758241673 Functional Loss - CCNYL1 ENSG00000163249 CDS Human protein_coding chr2:208576731 chr2:208576731 synonymous SNV . 0 21 hm5C_associated_SNPs_49560 0 0 0 0 1 CCNYL1 chr2:208576662 3'AG 208576662 Downstream 70bp
chr17 4803625 4803625 1 + C T rs79009580 4803625 + 4803605 4803645 41 ATCCGGGTGCAGCGCTGAGCCGGGTAGCCCAAGCCGCAGGG ATCCGGGTGCAGCGCTGAGCTGGGTAGCCCAAGCCGCAGGG Direct Loss 0.951494583966538 0 0.8745786 0.8345965 prediction 0.902989167933075 Functional Loss - C17orf107 ENSG00000205710 CDS Human protein_coding chr17:4803625 chr17:4803625 nonsynonymous SNV 0.004 3 21 hm5C_associated_SNPs_49561 0 0 0 0 1 C17orf107 chr17:4803532 3'AG 4803532 Downstream 94bp
chr9 80923441 80923441 1 + C T UCEC 80923441 + 80923421 80923461 41 TCCGAGAGTGCCCCTCGGTCCTGGAATACAAGGTGCAGGCT TCCGAGAGTGCCCCTCGGTCTTGGAATACAAGGTGCAGGCT Direct Loss 0.951456191658403 0 0.21483475 0.22934932 prediction 0.902912383316805 Functional Loss - PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80923441 chr9:80923441 synonymous SNV . 0 21 hm5C_associated_SNPs_49565 0 0 1 0 1 PSAT1 chr9:80923499 5'GT 80923499 Upstream 59bp
chr12 110019245 110019245 1 + C T UCEC 110019245 + 110019225 110019265 41 GTGTGGTCGGAGCTGCCCCCCGGGGCGGGCTTGGGCTCCAG GTGTGGTCGGAGCTGCCCCCTGGGGCGGGCTTGGGCTCCAG Direct Loss 0.951447780166307 0 0.9096056 0.8207653 prediction 0.902895560332615 Functional Loss - MVK ENSG00000110921 CDS Human protein_coding chr12:110019245 chr12:110019245 synonymous SNV . 0 21 hm5C_associated_SNPs_49566 0 0 1 0 1 MVK chr12:110019200 3'AG 110019200 Downstream 46bp
chr1 47505158 47505158 1 + C T PRAD 47505158 + 47505138 47505178 41 CTGAGCATCAAGAGAGATGCCGGGAGGAGGTCAGGGGCATC CTGAGCATCAAGAGAGATGCTGGGAGGAGGTCAGGGGCATC Direct Loss 0.951439448495289 0 0.8477952 0.8150201 prediction 0.902878896990577 Functional Loss - CYP4X1 ENSG00000186377 CDS Human protein_coding chr1:47505158 chr1:47505158 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_49567 0 0 0 0 1 CYP4X1 chr1:47505204 5'GT 47505204 Upstream 47bp
chr20 61593988 61593988 1 + C T LUSC 61593988 + 61593968 61594008 41 CTTTGCAGGACGCTGCTGACCGGGGCGGTGGGCTCCCTGCT CTTTGCAGGACGCTGCTGACTGGGGCGGTGGGCTCCCTGCT Direct Loss 0.9514263686192 0 0.93150795 0.9048822 prediction 0.9028527372384 Functional Loss - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61593988 chr20:61593988 synonymous SNV . 0 21 hm5C_associated_SNPs_49569 0 0 1 0 1 SLC17A9 chr20:61593976 3'AG 61593976 Downstream 13bp
chr16 31422130 31422130 1 + C T SKCM 31422130 + 31422110 31422150 41 GCCCCCCGCTACCAGCATACCGGGAAGGCTGTCATCTTCAC GCCCCCCGCTACCAGCATACTGGGAAGGCTGTCATCTTCAC Direct Loss 0.951405091720147 0 0.88495076 0.7512369 prediction 0.902810183440294 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422130 chr16:31422130 synonymous SNV . 0 21 hm5C_associated_SNPs_49571 0 0 0 0 2 ITGAD chr16:31422057 3'AG 31422057 Downstream 74bp
chr16 31422130 31422130 1 + C T SKCM 31422130 + 31422110 31422150 41 GCCCCCCGCTACCAGCATACCGGGAAGGCTGTCATCTTCAC GCCCCCCGCTACCAGCATACTGGGAAGGCTGTCATCTTCAC Direct Loss 0.951405091720147 0 0.88495076 0.7512369 prediction 0.902810183440294 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422130 chr16:31422130 synonymous SNV . 0 21 hm5C_associated_SNPs_49571 0 0 0 0 2 ITGAD chr16:31422199 5'GT 31422199 Upstream 70bp
chr1 26738031 26738031 1 + C T COAD 26738031 + 26738011 26738051 41 CTGTCCATGACCGCCCGCGCCGGGGTCGCGCTCGACCCCCC CTGTCCATGACCGCCCGCGCTGGGGTCGCGCTCGACCCCCC Direct Loss 0.951396593779411 0 0.90360594 0.6151703 prediction 0.902793187558822 Functional Loss - LIN28A ENSG00000131914 CDS Human protein_coding chr1:26738031 chr1:26738031 synonymous SNV . 0 21 hm5C_associated_SNPs_49572 0 0 0 0 1 LIN28A chr1:26738073 5'GT 26738073 Upstream 43bp
chr12 6884485 6884485 1 + C T LUSC 6884485 + 6884465 6884505 41 GTGTACGCTGGAGCAGGTTCCAGGGTGGGGCTGCCCTGCCG GTGTACGCTGGAGCAGGTTCTAGGGTGGGGCTGCCCTGCCG Direct Loss 0.951381596413221 0 0.9389186 0.91100335 prediction 0.902763192826441 Functional Loss - LAG3 ENSG00000089692 CDS Human protein_coding chr12:6884485 chr12:6884485 synonymous SNV . 0 21 hm5C_associated_SNPs_49574 0 0 0 0 1 LAG3 chr12:6884439 3'AG 6884439 Downstream 47bp
chr7 5112640 5112640 1 + C T LUAD 5112640 + 5112620 5112660 41 TGATGGGGCTGTGGTGGCCACGCGACCAGAAAGCCGGGGAG TGATGGGGCTGTGGTGGCCATGCGACCAGAAAGCCGGGGAG Direct Loss 0.951379567331778 0 0.8349507 0.7522729 prediction 0.902759134663556 Functional Loss - RBAKDN ENSG00000272968 CDS Human protein_coding chr7:5112640 chr7:5112640 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_49575 0 0 0 0 1 RBAKDN chr7:5112553 3'AG 5112553 Downstream 88bp
chr19 39423062 39423062 1 + C T LUAD 39423062 + 39423042 39423082 41 GGCCCCCCAAGCGGCCGCCTCGGAAGCTGGGCCCCACGGAA GGCCCCCCAAGCGGCCGCCTTGGAAGCTGGGCCCCACGGAA Direct Loss 0.951354155377201 0 0.90272844 0.67867196 prediction 0.902708310754403 Functional Loss - MRPS12 ENSG00000128626 CDS Human protein_coding chr19:39423062 chr19:39423062 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_49576 0 0 1 0 1 MRPS12 chr19:39422973 3'AG 39422973 Downstream 90bp
chr5 180258216 180258216 1 + C A rs111462360 180258216 + 180258196 180258236 41 CGCCGCCTCGGGGACCTTTGCGGGGAGGCCTCAGGTCAGCG CGCCGCCTCGGGGACCTTTGAGGGGAGGCCTCAGGTCAGCG Direct Loss 0.951328446766755 0 0.9327692 0.8981277 prediction 0.90265689353351 Functional Loss - HEIH;LINC00847 ENSG00000245060 ncRNA_exonic Human lincRNA chr5:180258216 chr5:180258216 . . 0 21 hm5C_associated_SNPs_49578 0 0 0 0 1 HEIH;LINC00847 chr5:180258229 5'GT 180258229 Upstream 14bp
chr13 111160490 111160490 1 - G T LUAD 111160490 - 111160470 111160510 41 GAGACATCCTGACTGTGGACCGCGATGGCGATGGCCGGGGC GAGACATCCTGACTGTGGACAGCGATGGCGATGGCCGGGGC Direct Loss 0.951213306929498 0 0.63151795 0.71852523 prediction 0.902426613858996 Functional Loss - COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111160490 chr13:111160490 synonymous SNV . 0 21 hm5C_associated_SNPs_49593 0 0 0 0 1 COL4A2 chr13:111160446 5'GT 111160446 Upstream 45bp
chr14 100182183 100182183 1 + C T STAD 100182183 + 100182163 100182203 41 GGAAGCAGCTCCGGGAGGTCCGGGAGAGCATTCGCTTCCTG GGAAGCAGCTCCGGGAGGTCTGGGAGAGCATTCGCTTCCTG Direct Loss 0.951177990003852 0 0.9177474 0.9159864 prediction 0.902355980007704 Functional Loss - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100182183 chr14:100182183 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_49594 0 0 1 0 1 CYP46A1 chr14:100182147 3'AG 100182147 Downstream 37bp
chr1 45267308 45267308 1 + C T BLCA 45267308 + 45267288 45267328 41 CTGCAGTCCCTGGCCCACATCTGGAAGGCCCGGCACACCCT CTGCAGTCCCTGGCCCACATTTGGAAGGCCCGGCACACCCT Direct Loss 0.951173566421995 0 0.86879706 0.8256973 prediction 0.90234713284399 Functional Loss - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267308 chr1:45267308 synonymous SNV . 0 21 hm5C_associated_SNPs_49595 0 0 1 0 1 PLK3 chr1:45267294 3'AG 45267294 Downstream 15bp
chr5 162896698 162896698 1 + C T UCEC 162896698 + 162896678 162896718 41 AGGACAGGCGGATCCAGGATCTGGAAACTGAGTTGGAAAAG AGGACAGGCGGATCCAGGATTTGGAAACTGAGTTGGAAAAG Direct Loss 0.951160264218072 0 0.8599122 0.7828352 prediction 0.902320528436144 Functional Loss - HMMR ENSG00000072571 CDS Human protein_coding chr5:162896698 chr5:162896698 synonymous SNV . 0 21 hm5C_associated_SNPs_49596 0 0 1 0 1 HMMR chr5:162896647 3'AG 162896647 Downstream 52bp
chr11 49053515 49053515 1 + C T PAAD 49053515 + 49053495 49053535 41 GCTCCAGCTCTCAGGAGCACCGGGATCACAGACACTGTCCC GCTCCAGCTCTCAGGAGCACTGGGATCACAGACACTGTCCC Direct Loss 0.951141327871058 0 0.87448835 0.61919373 prediction 0.902282655742116 Functional Loss - TRIM49B ENSG00000182053 CDS Human protein_coding chr11:49053515 chr11:49053515 nonsynonymous SNV 0.101 1 21 hm5C_associated_SNPs_49597 0 0 0 0 1 TRIM49B chr11:49053562 5'GT 49053562 Upstream 48bp
chr16 69963428 69963428 1 + C T HNSC 69963428 + 69963408 69963448 41 AGTGGGAGGATCCCCGGACCCAGGGGTAAGGACTTGGGCTG AGTGGGAGGATCCCCGGACCTAGGGGTAAGGACTTGGGCTG Direct Loss 0.951124492602401 0 0.9362266 0.90403867 prediction 0.902248985204801 Functional Loss - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69963428 chr16:69963428 stopgain 0.978 1 21 hm5C_associated_SNPs_49600 0 0 1 0 2 WWP2 chr16:69963351 3'AG 69963351 Downstream 78bp
chr16 69963428 69963428 1 + C T HNSC 69963428 + 69963408 69963448 41 AGTGGGAGGATCCCCGGACCCAGGGGTAAGGACTTGGGCTG AGTGGGAGGATCCCCGGACCTAGGGGTAAGGACTTGGGCTG Direct Loss 0.951124492602401 0 0.9362266 0.90403867 prediction 0.902248985204801 Functional Loss - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69963428 chr16:69963428 stopgain 0.978 1 21 hm5C_associated_SNPs_49600 0 0 1 0 2 WWP2 chr16:69963432 5'GT 69963432 Upstream 5bp
chr7 48081094 48081094 1 + C T BLCA 48081094 + 48081074 48081114 41 GATTCGGAATATGTGAAGCTCGCGAAACAAGGTGGCAGGCC GATTCGGAATATGTGAAGCTTGCGAAACAAGGTGGCAGGCC Direct Loss 0.951100937215168 0 0.85387546 0.47130528 prediction 0.902201874430337 Functional Loss - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48081094 chr7:48081094 synonymous SNV . 0 21 hm5C_associated_SNPs_49601 0 0 0 0 1 C7orf57 chr7:48081116 5'GT 48081116 Upstream 23bp
chr1 162762467 162762467 1 + C A CESC 162762467 + 162762447 162762487 41 AGTGGCATTGGCCTGGCCCTCTGCAAGCGGCTGCTGGCGGA AGTGGCATTGGCCTGGCCCTATGCAAGCGGCTGCTGGCGGA Direct Loss 0.951011258241569 0 0.3871622 0.15125364 prediction 0.902022516483139 Functional Loss - HSD17B7 ENSG00000132196 CDS Human protein_coding chr1:162762467 chr1:162762467 synonymous SNV . 0 21 hm5C_associated_SNPs_49607 0 0 1 0 1 HSD17B7 chr1:162762449 3'AG 162762449 Downstream 19bp
chr2 233394711 233394711 1 + C T CESC 233394711 + 233394691 233394731 41 ACGTGGACCCCAGAGCCCCTCTGGACAGCCCCAGCCGCCAG ACGTGGACCCCAGAGCCCCTTTGGACAGCCCCAGCCGCCAG Direct Loss 0.950988937862671 0 0.2535199 0.25179732 prediction 0.901977875725341 Functional Loss - CHRND ENSG00000135902 CDS Human protein_coding chr2:233394711 chr2:233394711 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_49609 0 0 0 0 1 CHRND chr2:233394649 3'AG 233394649 Downstream 63bp
chr22 17983959 17983959 1 + C T COAD 17983959 + 17983939 17983979 41 GACAGGTCACCGAGAGTTTTCGCGAGAGGACCTCCCTTCGA GACAGGTCACCGAGAGTTTTTGCGAGAGGACCTCCCTTCGA Direct Loss 0.950976672052574 0 0.90664196 0.65281266 prediction 0.901953344105147 Functional Loss - CECR2 ENSG00000099954 CDS Human protein_coding chr22:17983959 chr22:17983959 nonsynonymous SNV 0.902 4 21 hm5C_associated_SNPs_49610 0 0 1 0 1 CECR2 chr22:17984048 5'GT 17984048 Upstream 90bp
chr16 77859314 77859314 1 + C G LUSC 77859314 + 77859294 77859334 41 TGTTTGAAGTTGCCAACCTCCGGGAAGGGATGTCTGTGCTC TGTTTGAAGTTGCCAACCTCGGGGAAGGGATGTCTGTGCTC Direct Loss 0.950959774111647 0 0.44467834 0.8861772 prediction 0.901919548223294 Functional Loss - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77859314 chr16:77859314 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_49613 0 0 0 0 1 VAT1L chr16:77859358 5'GT 77859358 Upstream 45bp
chr13 113765066 113765066 1 + C A UCEC 113765066 + 113765046 113765086 41 GCCGGCGCGCCAACGCGTTCCTGGAGGAGCTGCGGCCGGGC GCCGGCGCGCCAACGCGTTCATGGAGGAGCTGCGGCCGGGC Direct Loss 0.950931757681112 0 0.8799926 0.90521204 prediction 0.901863515362225 Functional Loss - F7 ENSG00000057593 CDS Human protein_coding chr13:113765066 chr13:113765066 nonsynonymous SNV 0.474 2 21 hm5C_associated_SNPs_49618 0 0 1 0 2 F7 chr13:113765004 3'AG 113765004 Downstream 63bp
chr13 113765066 113765066 1 + C A UCEC 113765066 + 113765046 113765086 41 GCCGGCGCGCCAACGCGTTCCTGGAGGAGCTGCGGCCGGGC GCCGGCGCGCCAACGCGTTCATGGAGGAGCTGCGGCCGGGC Direct Loss 0.950931757681112 0 0.8799926 0.90521204 prediction 0.901863515362225 Functional Loss - F7 ENSG00000057593 CDS Human protein_coding chr13:113765066 chr13:113765066 nonsynonymous SNV 0.474 2 21 hm5C_associated_SNPs_49618 0 0 1 0 2 F7 chr13:113765164 5'GT 113765164 Upstream 99bp
chr8 145745377 145745377 1 + C A STAD 145745377 + 145745357 145745397 41 AGAGCATGCAGGCTGTTATCCTGGGGCTGACTGCCCGGCTC AGAGCATGCAGGCTGTTATCATGGGGCTGACTGCCCGGCTC Direct Loss 0.950918882663841 0 0.9423547 0.94973135 prediction 0.901837765327682 Functional Loss - LRRC14 ENSG00000160959 CDS Human protein_coding chr8:145745377 chr8:145745377 nonsynonymous SNV 0.990 1 21 hm5C_associated_SNPs_49620 0 0 1 0 1 LRRC14 chr8:145745438 5'GT 145745438 Upstream 62bp
chr7 24324937 24324937 1 + C T COAD 24324937 + 24324917 24324957 41 GTGTGCCTGGGTGCGCTGGCCGAGGCGTACCCCTCCAAGCC GTGTGCCTGGGTGCGCTGGCTGAGGCGTACCCCTCCAAGCC Direct Loss 0.950912351802425 0 0.89863366 0.87334085 prediction 0.901824703604849 Functional Loss - NPY ENSG00000122585 CDS Human protein_coding chr7:24324937 chr7:24324937 synonymous SNV . 0 21 hm5C_associated_SNPs_49622 0 0 0 0 1 NPY chr7:24324860 3'AG 24324860 Downstream 78bp
chr22 39482371 39482371 1 + C G rs17496046 39482371 + 39482351 39482391 41 TTTGGAAGCTGGACCTGGACCAGGACTACAGGGTTACCTGC TTTGGAAGCTGGACCTGGACGAGGACTACAGGGTTACCTGC Direct Loss 0.950898479328336 0 0.4621124 0.40303048 prediction 0.901796958656672 Functional Loss - APOBEC3G ENSG00000239713 CDS Human protein_coding chr22:39482371 chr22:39482371 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_49625 0 0 0 0 1 APOBEC3G chr22:39482284 3'AG 39482284 Downstream 88bp
chr20 45700876 45700876 1 + C T UCEC 45700876 + 45700856 45700896 41 CTGGGCAACGCAGCCGGTTTCGGGAGTGTGCACCAGGTAGA CTGGGCAACGCAGCCGGTTTTGGGAGTGTGCACCAGGTAGA Direct Loss 0.950880158136193 0 0.93914956 0.91103137 prediction 0.901760316272387 Functional Loss - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45700876 chr20:45700876 synonymous SNV . 0 21 hm5C_associated_SNPs_49627 0 0 0 0 2 EYA2 chr20:45700824 3'AG 45700824 Downstream 53bp
chr20 45700876 45700876 1 + C T UCEC 45700876 + 45700856 45700896 41 CTGGGCAACGCAGCCGGTTTCGGGAGTGTGCACCAGGTAGA CTGGGCAACGCAGCCGGTTTTGGGAGTGTGCACCAGGTAGA Direct Loss 0.950880158136193 0 0.93914956 0.91103137 prediction 0.901760316272387 Functional Loss - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45700876 chr20:45700876 synonymous SNV . 0 21 hm5C_associated_SNPs_49627 0 0 0 0 2 EYA2 chr20:45700891 5'GT 45700891 Upstream 16bp
chr11 1959713 1959713 1 + C T UCEC 1959713 + 1959693 1959733 41 AAGGGCAAAGTCGGCGGGCGCTGGAAGTAGAGAGGCCAGAA AAGGGCAAAGTCGGCGGGCGTTGGAAGTAGAGAGGCCAGAA Direct Loss 0.950853081199275 0 0.7810682 0.7498771 prediction 0.901706162398551 Functional Loss - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1959713 chr11:1959713 synonymous SNV . 0 21 hm5C_associated_SNPs_49630 0 0 0 0 1 TNNT3 chr11:1959668 3'AG 1959668 Downstream 46bp
chr12 56631000 56631000 1 + C T CESC 56631000 + 56630980 56631020 41 GCTGCTGCTGAGCCTCGTGTCTGGAGCCCTGGGATTGGGGG GCTGCTGCTGAGCCTCGTGTTTGGAGCCCTGGGATTGGGGG Direct Loss 0.950825075078229 0 0.32556024 0.4715426 prediction 0.901650150156459 Functional Loss - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56631000 chr12:56631000 nonsynonymous SNV 0.981 4 21 hm5C_associated_SNPs_49636 0 0 0 0 1 SLC39A5 chr12:56630934 3'AG 56630934 Downstream 67bp
chr20 42695404 42695404 1 + C T rs149010935 42695404 + 42695384 42695424 41 CTCTGAGTTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCC CTCTGAGTTCCCCAGCAGCTTGGGATCCTGCTCACCTGGCC Direct Loss 0.950819375350944 0 0.916584 0.5283399 prediction 0.901638750701889 Functional Loss - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695404 chr20:42695404 nonsynonymous SNV 0.573 0 21 hm5C_associated_SNPs_49638 0 0 1 0 2 TOX2 chr20:42695370 3'AG 42695370 Downstream 35bp
chr20 42695404 42695404 1 + C T rs149010935 42695404 + 42695384 42695424 41 CTCTGAGTTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCC CTCTGAGTTCCCCAGCAGCTTGGGATCCTGCTCACCTGGCC Direct Loss 0.950819375350944 0 0.916584 0.5283399 prediction 0.901638750701889 Functional Loss - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695404 chr20:42695404 nonsynonymous SNV 0.573 0 21 hm5C_associated_SNPs_49638 0 0 1 0 2 TOX2 chr20:42695497 5'GT 42695497 Upstream 94bp
chr11 30344725 30344725 1 + C T rs4071559 30344725 + 30344705 30344745 41 ACTCGCATCTTGCCCGAAGCCGGGCGGAGGAGAGCTCAAGC ACTCGCATCTTGCCCGAAGCTGGGCGGAGGAGAGCTCAAGC Direct Loss 0.95081909280178 0 0.76104295 0.5865371 prediction 0.90163818560356 Functional Loss - ARL14EP ENSG00000152219 UTR5 Human protein_coding chr11:30344725 chr11:30344725 . . 0 21 hm5C_associated_SNPs_49640 0 0 1 0 1 ARL14EP chr11:30344749 5'GT 30344749 Upstream 25bp
chr3 127682121 127682121 1 + C T rs138448623 127682121 + 127682101 127682141 41 ACCCAGATGGGGACTTTTGGCGAGAGGGCCCTCCCATGCCA ACCCAGATGGGGACTTTTGGTGAGAGGGCCCTCCCATGCCA Direct Loss 0.950791635593159 0 0.8686254 0.71288645 prediction 0.901583271186317 Functional Loss - KBTBD12 ENSG00000187715 CDS Human protein_coding chr3:127682121 chr3:127682121 stopgain 0.992 1 21 hm5C_associated_SNPs_49646 0 0 0 0 1 KBTBD12 chr3:127682032 3'AG 127682032 Downstream 90bp
chr12 122684846 122684846 1 + C T LUSC 122684846 + 122684826 122684866 41 ACTGAAGGCCTTCCTGCTGGCGGGGACCACCGTGACCATCG ACTGAAGGCCTTCCTGCTGGTGGGGACCACCGTGACCATCG Direct Loss 0.950759745276408 0 0.8985461 0.6485348 prediction 0.901519490552815 Functional Loss - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122684846 chr12:122684846 nonsynonymous SNV 0.473 1 21 hm5C_associated_SNPs_49648 0 0 0 0 1 LRRC43 chr12:122684877 5'GT 122684877 Upstream 32bp
chr19 17612097 17612097 1 + C A LUAD 17612097 + 17612077 17612117 41 TCCAGGAGTGGAGGGTAAGGCAGGGATGGCGGCCGTCGCAG TCCAGGAGTGGAGGGTAAGGAAGGGATGGCGGCCGTCGCAG Direct Loss 0.950672674024193 0 0.93192863 0.9062146 prediction 0.901345348048387 Functional Loss - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17612097 chr19:17612097 nonsynonymous SNV 0.915 3 21 hm5C_associated_SNPs_49656 0 0 1 0 1 SLC27A1 chr19:17612082 3'AG 17612082 Downstream 16bp
chrX 123480537 123480537 1 + C T CESC 123480537 + 123480517 123480557 41 GGCAAAATCAGCAGGGAAACCGGCGAGAAGCTCCTGCTTGC GGCAAAATCAGCAGGGAAACTGGCGAGAAGCTCCTGCTTGC Direct Loss 0.950624410187316 0 0.89299375 0.816017 prediction 0.901248820374633 Functional Loss - SH2D1A ENSG00000183918 CDS Human protein_coding chrX:123480537 chrX:123480537 synonymous SNV . 0 21 hm5C_associated_SNPs_49660 0 0 0 2 1 SH2D1A chrX:123480629 5'GT 123480629 Upstream 93bp
chr3 148601438 148601438 1 + C T UCEC 148601438 + 148601418 148601458 41 ACCCATGTGCAGATAACTATCGGGGCTCTGCACCAGAGTCC ACCCATGTGCAGATAACTATTGGGGCTCTGCACCAGAGTCC Direct Loss 0.95061988205916 0 0.959978 0.9312697 prediction 0.90123976411832 Functional Loss - CPA3 ENSG00000163751 CDS Human protein_coding chr3:148601438 chr3:148601438 nonsynonymous SNV 0.006 2 21 hm5C_associated_SNPs_49661 0 0 0 0 1 CPA3 chr3:148601400 3'AG 148601400 Downstream 39bp
chr16 31230697 31230697 1 + C A rs115885262 31230697 + 31230677 31230717 41 CACTGGAGGGCTCCTTGGACCGCGAGGCAGAGCGTGTACGG CACTGGAGGGCTCCTTGGACAGCGAGGCAGAGCGTGTACGG Direct Loss 0.950617724089367 0 0.45109516 0.38791126 prediction 0.901235448178735 Functional Loss - TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31230697 chr16:31230697 nonsynonymous SNV 0.340 0 21 hm5C_associated_SNPs_49662 0 0 1 0 1 TRIM72 chr16:31230610 3'AG 31230610 Downstream 88bp
chr6 131602737 131602737 1 + C T UCEC 131602737 + 131602717 131602757 41 AGTAAGAGGCTGGTGGAGAACGCGGTGCTCAAGGCTGTCCA AGTAAGAGGCTGGTGGAGAATGCGGTGCTCAAGGCTGTCCA Direct Loss 0.95061548891879 0 0.8984257 0.8922787 prediction 0.901230977837579 Functional Loss - AKAP7 ENSG00000118507 CDS Human protein_coding chr6:131602737 chr6:131602737 synonymous SNV . 0 21 hm5C_associated_SNPs_49663 0 0 0 0 1 AKAP7 chr6:131602670 3'AG 131602670 Downstream 68bp
chr3 128997702 128997702 1 + C A rs116769111 128997702 + 128997682 128997722 41 GTGGCCAAAGCGGAGCGGAGCGGGGGTGAGGAGAGTCGAGG GTGGCCAAAGCGGAGCGGAGAGGGGGTGAGGAGAGTCGAGG Direct Loss 0.950610480535679 0 0.9100498 0.8917975 prediction 0.901220961071358 Functional Loss - HMCES ENSG00000183624 UTR5 Human protein_coding chr3:128997702 chr3:128997702 . . 0 21 hm5C_associated_SNPs_49664 0 0 1 0 1 HMCES chr3:128997748 5'GT 128997748 Upstream 47bp
chr17 7214723 7214723 1 + C T HNSC 7214723 + 7214703 7214743 41 TCCAGGACAGCGGGGAGGTACGAGAGGACCTTCGTCTCCCT TCCAGGACAGCGGGGAGGTATGAGAGGACCTTCGTCTCCCT Direct Loss 0.950599362513809 0 0.9076462 0.89308023 prediction 0.901198725027617 Functional Loss - EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214723 chr17:7214723 stopgain 0.999 1 21 hm5C_associated_SNPs_49665 0 0 1 0 2 EIF5A chr17:7214669 3'AG 7214669 Downstream 55bp
chr17 7214723 7214723 1 + C T HNSC 7214723 + 7214703 7214743 41 TCCAGGACAGCGGGGAGGTACGAGAGGACCTTCGTCTCCCT TCCAGGACAGCGGGGAGGTATGAGAGGACCTTCGTCTCCCT Direct Loss 0.950599362513809 0 0.9076462 0.89308023 prediction 0.901198725027617 Functional Loss - EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214723 chr17:7214723 stopgain 0.999 1 21 hm5C_associated_SNPs_49665 0 0 1 0 2 EIF5A chr17:7214800 5'GT 7214800 Upstream 78bp
chr14 73572661 73572661 1 + C A LUSC 73572661 + 73572641 73572681 41 AACGGGAGCGAGAGAGAGAGCGAGAGAGGGAACGGGAGCGA AACGGGAGCGAGAGAGAGAGAGAGAGAGGGAACGGGAGCGA Direct Loss 0.950586405952123 0 0.82105386 0.80882317 prediction 0.901172811904246 Functional Loss - RBM25 ENSG00000119707 CDS Human protein_coding chr14:73572661 chr14:73572661 synonymous SNV . 0 21 hm5C_associated_SNPs_49666 0 0 1 0 1 RBM25 chr14:73572567 3'AG 73572567 Downstream 95bp
chr22 39421279 39421279 1 + C T UCEC 39421279 + 39421259 39421299 41 CCGCCCGCCTCTACTACTACCGGGATAGAGATTGGCGGTGG CCGCCCGCCTCTACTACTACTGGGATAGAGATTGGCGGTGG Direct Loss 0.950581052140923 0 0.87795424 0.525096 prediction 0.901162104281847 Functional Loss - APOBEC3D ENSG00000243811 CDS Human protein_coding chr22:39421279 chr22:39421279 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_49667 0 0 0 0 1 APOBEC3D chr22:39421354 5'GT 39421354 Upstream 76bp
chr15 40565079 40565079 1 + C A rs201655600 40565079 + 40565059 40565099 41 GCCCCCAGGTGGTGATCATGCGGGACTACCAGCACTTCAAC GCCCCCAGGTGGTGATCATGAGGGACTACCAGCACTTCAAC Direct Loss 0.950580422225982 0 0.90437424 0.88886046 prediction 0.901160844451965 Functional Loss - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40565079 chr15:40565079 synonymous SNV . 0 21 hm5C_associated_SNPs_49668 0 0 0 0 1 BUB1B-PAK6;PAK6 chr15:40565067 3'AG 40565067 Downstream 13bp
chr12 53819644 53819644 1 + C T COAD 53819644 + 53819624 53819664 41 TCCGATTTATCACTGCCAGCCGGGGGGGTCCTGGCCGCCTG TCCGATTTATCACTGCCAGCTGGGGGGGTCCTGGCCGCCTG Direct Loss 0.950574513166302 0 0.946712 0.9312861 prediction 0.901149026332605 Functional Loss - AMHR2 ENSG00000135409 CDS Human protein_coding chr12:53819644 chr12:53819644 nonsynonymous SNV 0.066 1 21 hm5C_associated_SNPs_49669 0 0 0 0 1 AMHR2 chr12:53819703 5'GT 53819703 Upstream 60bp
chr14 94568272 94568272 1 + C T READ 94568272 + 94568252 94568292 41 TCTACAGCAGCCATTGCCAACGGGGGCGGAGTTGCTGCTGG TCTACAGCAGCCATTGCCAATGGGGGCGGAGTTGCTGCTGG Direct Loss 0.950570014275043 0 0.9371587 0.84126025 prediction 0.901140028550086 Functional Loss - IFI27L1 ENSG00000165948 CDS Human protein_coding chr14:94568272 chr14:94568272 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_49670 0 0 1 0 1 IFI27L1 chr14:94568321 5'GT 94568321 Upstream 50bp
chrX 99917344 99917344 1 + C T SKCM 99917344 + 99917324 99917364 41 CCTGCCAAGCCGTCGTTGGTCTGGAACTGCCTACTGCAGGC CCTGCCAAGCCGTCGTTGGTTTGGAACTGCCTACTGCAGGC Direct Loss 0.950565153636318 0 0.32167953 0.2501206 prediction 0.901130307272635 Functional Loss - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99917344 chrX:99917344 nonsynonymous SNV 0.993 4 21 hm5C_associated_SNPs_49671 0 0 1 0 1 SRPX2 chrX:99917364 5'GT 99917364 Upstream 21bp
chr11 33090282 33090282 1 + C G STAD 33090282 + 33090262 33090302 41 CCATCGGGGAGAAGGTGTGCCTGGAGGTGAGCAGCTGCCTC CCATCGGGGAGAAGGTGTGCGTGGAGGTGAGCAGCTGCCTC Direct Loss 0.950554807898008 0 0.43852496 0.6508327 prediction 0.901109615796016 Functional Loss - TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33090282 chr11:33090282 nonsynonymous SNV 0.992 0 21 hm5C_associated_SNPs_49673 0 0 1 0 1 TCP11L1 chr11:33090233 3'AG 33090233 Downstream 50bp
chr19 36120554 36120554 1 + C G HNSC 36120554 + 36120534 36120574 41 CCTGTGATCCGCCCAATTATCGCGACCAACACATACCAGCA CCTGTGATCCGCCCAATTATGGCGACCAACACATACCAGCA Direct Loss 0.950552234463621 0 0.8757111 0.68866247 prediction 0.901104468927243 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36120554 chr19:36120554 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_49674 0 0 1 0 1 RBM42 chr19:36120575 5'GT 36120575 Upstream 22bp
chr15 44751319 44751319 1 + C G LUAD 44751319 + 44751299 44751339 41 GGTTGATGATAGCCTGCCTTCAGGAGGAGAAAAACCATCGA GGTTGATGATAGCCTGCCTTGAGGAGGAGAAAAACCATCGA Direct Loss 0.950548668225979 0 0.8774259 0.40546602 prediction 0.901097336451959 Functional Loss - CTDSPL2 ENSG00000137770 CDS Human protein_coding chr15:44751319 chr15:44751319 stopgain 1.000 0 21 hm5C_associated_SNPs_49675 0 0 1 0 1 CTDSPL2 chr15:44751398 5'GT 44751398 Upstream 80bp
chr6 167591961 167591961 1 + C T UCEC 167591961 + 167591941 167591981 41 CCTCCCGGGAGACGTCAAGACAGAAGTCCAGCACCCACTGG CCTCCCGGGAGACGTCAAGATAGAAGTCCAGCACCCACTGG Direct Loss 0.950536795509342 0 0.4518894 0.27656054 prediction 0.901073591018683 Functional Loss - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167591961 chr6:167591961 synonymous SNV . 0 21 hm5C_associated_SNPs_49676 0 0 0 0 2 TCP10L2 chr6:167591872 3'AG 167591872 Downstream 90bp
chr6 167591961 167591961 1 + C T UCEC 167591961 + 167591941 167591981 41 CCTCCCGGGAGACGTCAAGACAGAAGTCCAGCACCCACTGG CCTCCCGGGAGACGTCAAGATAGAAGTCCAGCACCCACTGG Direct Loss 0.950536795509342 0 0.4518894 0.27656054 prediction 0.901073591018683 Functional Loss - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167591961 chr6:167591961 synonymous SNV . 0 21 hm5C_associated_SNPs_49676 0 0 0 0 2 TCP10L2 chr6:167592030 5'GT 167592030 Upstream 70bp
chr11 75480099 75480099 1 + C T SARC 75480099 + 75480079 75480119 41 GAGCGTCAGGCCGAGGCTGACCGGAGCCAGCGCTCTCACGG GAGCGTCAGGCCGAGGCTGATCGGAGCCAGCGCTCTCACGG Direct Loss 0.950508085100902 0 0.9180788 0.937102 prediction 0.901016170201804 Functional Loss - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75480099 chr11:75480099 synonymous SNV . 0 21 hm5C_associated_SNPs_49677 0 0 1 0 1 DGAT2 chr11:75480157 5'GT 75480157 Upstream 59bp
chr5 76714121 76714121 1 + C T UCEC 76714121 + 76714101 76714141 41 AGTCCATGACGTGGATCACCCGGGAAGGACCAACTCTTTCC AGTCCATGACGTGGATCACCTGGGAAGGACCAACTCTTTCC Direct Loss 0.950500217676715 0 0.87701654 0.7939353 prediction 0.901000435353429 Functional Loss - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76714121 chr5:76714121 nonsynonymous SNV 0.922 4 21 hm5C_associated_SNPs_49680 0 0 1 0 1 PDE8B chr5:76714054 3'AG 76714054 Downstream 68bp
chrX 128888527 128888527 1 + C T rs61733002 128888527 + 128888507 128888547 41 AGGCACAGTGGATGAGTTCTCGGGGGCAGAGATCGTGGACA AGGCACAGTGGATGAGTTCTTGGGGGCAGAGATCGTGGACA Direct Loss 0.950496721104453 0 0.9536911 0.9272696 prediction 0.900993442208907 Functional Loss - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128888527 chrX:128888527 nonsynonymous SNV 0.390 2 21 hm5C_associated_SNPs_49682 0 0 0 0 1 XPNPEP2 chrX:128888448 3'AG 128888448 Downstream 80bp
chr19 46029421 46029421 1 + C T UCEC 46029421 + 46029401 46029441 41 TCGTCCAGGAGCTGAGGAAGCGGGGTTCTCCCTGACCACAG TCGTCCAGGAGCTGAGGAAGTGGGGTTCTCCCTGACCACAG Direct Loss 0.95044533344468 0 0.9531014 0.93158937 prediction 0.90089066688936 Functional Loss - VASP ENSG00000125753 CDS Human protein_coding chr19:46029421 chr19:46029421 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_49688 0 0 1 0 1 VASP chr19:46029398 3'AG 46029398 Downstream 24bp
chr19 8436164 8436164 1 + C T rs1044250 8436164 + 8436144 8436184 41 GGAGAAGGTGCATAGCATCACGGGGGACCGCAACAGCCGCC GGAGAAGGTGCATAGCATCATGGGGGACCGCAACAGCCGCC Direct Loss 0.950443561101092 0 0.922273 0.8983598 prediction 0.900887122202183 Functional Loss - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8436164 chr19:8436164 nonsynonymous SNV 0.022 0 21 hm5C_associated_SNPs_49689 0 0 1 0 1 ANGPTL4 chr19:8436125 3'AG 8436125 Downstream 40bp
chr19 50357680 50357680 1 + C T UCEC 50357680 + 50357660 50357700 41 CAGGAAGGTGCTCGGGTCTTCGGGGCACTGGGTCCCATCGG CAGGAAGGTGCTCGGGTCTTTGGGGCACTGGGTCCCATCGG Direct Loss 0.950435514329158 0 0.96452713 0.94637626 prediction 0.900871028658317 Functional Loss - PTOV1 ENSG00000104960 CDS Human protein_coding chr19:50357680 chr19:50357680 synonymous SNV . 0 21 hm5C_associated_SNPs_49691 0 0 1 0 1 PTOV1 chr19:50357663 3'AG 50357663 Downstream 18bp
chr1 24669202 24669202 1 + C T BRCA 24669202 + 24669182 24669222 41 AGGGAGCTGAGAGGAAGATGCGCGATGACGAGCGGAAGCAG AGGGAGCTGAGAGGAAGATGTGCGATGACGAGCGGAAGCAG Direct Loss 0.950414439500506 0 0.31788003 0.2024745 prediction 0.900828879001011 Functional Loss - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24669202 chr1:24669202 nonsynonymous SNV 0.988 4 21 hm5C_associated_SNPs_49693 0 0 0 0 2 GRHL3 chr1:24669184 3'AG 24669184 Downstream 19bp
chr1 24669202 24669202 1 + C T BRCA 24669202 + 24669182 24669222 41 AGGGAGCTGAGAGGAAGATGCGCGATGACGAGCGGAAGCAG AGGGAGCTGAGAGGAAGATGTGCGATGACGAGCGGAAGCAG Direct Loss 0.950414439500506 0 0.31788003 0.2024745 prediction 0.900828879001011 Functional Loss - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24669202 chr1:24669202 nonsynonymous SNV 0.988 4 21 hm5C_associated_SNPs_49693 0 0 0 0 2 GRHL3 chr1:24669262 5'GT 24669262 Upstream 61bp
chr3 122545733 122545733 1 + C G CESC 122545733 + 122545713 122545753 41 TCTCTCTACGACGTGGTTTTCTGCAGATGAAAGGGCCACAG TCTCTCTACGACGTGGTTTTGTGCAGATGAAAGGGCCACAG Direct Loss 0.950403271402209 0 0.22167113 0.1347256 prediction 0.900806542804419 Functional Loss - DIRC2 ENSG00000138463 CDS Human protein_coding chr3:122545733 chr3:122545733 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_49699 0 0 0 1 1 DIRC2 chr3:122545647 3'AG 122545647 Downstream 87bp
chr11 5626756 5626756 1 + C T BLCA 5626756 + 5626736 5626776 41 TGCGAGAGCTCATCTCGGATCTGGAGCGTCGATGTCAGGGG TGCGAGAGCTCATCTCGGATTTGGAGCGTCGATGTCAGGGG Direct Loss 0.95037878576859 0 0.2365706 0.28665924 prediction 0.900757571537181 Functional Loss - TRIM6;TRIM6-TRIM34 ENSG00000121236;ENSG00000258588 CDS Human other chr11:5626756 chr11:5626756 synonymous SNV . 0 21 hm5C_associated_SNPs_49702 0 0 0 0 1 TRIM6;TRIM6-TRIM34 chr11:5626797 5'GT 5626797 Upstream 42bp
chr1 77334339 77334339 1 + C T LUAD 77334339 + 77334319 77334359 41 GGCCACCGGCAGCTCGCAGCCGGCGGCGGAGAGCAGCACCC GGCCACCGGCAGCTCGCAGCTGGCGGCGGAGAGCAGCACCC Direct Loss 0.950353368343093 0 0.89306426 0.8413763 prediction 0.900706736686187 Functional Loss - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77334339 chr1:77334339 nonsynonymous SNV 0.059 1 21 hm5C_associated_SNPs_49705 0 0 0 0 1 ST6GALNAC5 chr1:77334427 5'GT 77334427 Upstream 89bp
chr19 35758631 35758631 1 + C G BLCA 35758631 + 35758611 35758651 41 GCGTCCCGAGAGCGCAGGCTCAAGAAGGTGAGGGCCGCCCT GCGTCCCGAGAGCGCAGGCTGAAGAAGGTGAGGGCCGCCCT Direct Loss 0.950353130204209 0 0.8440366 0.66436636 prediction 0.900706260408418 Functional Loss - LSR ENSG00000105699 CDS Human protein_coding chr19:35758631 chr19:35758631 synonymous SNV . 0 21 hm5C_associated_SNPs_49706 0 0 1 0 1 LSR chr19:35758637 5'GT 35758637 Upstream 7bp
chr5 40681884 40681884 1 + C T BLCA 40681884 + 40681864 40681904 41 CGCCGGAGCTTCCGCCGCATCGCGGGCGCCGAGATCCAGAT CGCCGGAGCTTCCGCCGCATTGCGGGCGCCGAGATCCAGAT Direct Loss 0.950341578003269 0 0.9037733 0.85901964 prediction 0.900683156006538 Functional Loss - PTGER4 ENSG00000171522 CDS Human protein_coding chr5:40681884 chr5:40681884 synonymous SNV . 0 21 hm5C_associated_SNPs_49711 0 0 0 0 1 PTGER4 chr5:40681962 5'GT 40681962 Upstream 79bp
chr6 167709603 167709603 1 + C T rs34631973 167709603 + 167709583 167709623 41 GTGCACATACCTCACGATCACGGGAAACACACATGCAGAGA GTGCACATACCTCACGATCATGGGAAACACACATGCAGAGA Direct Loss 0.950301299446155 0 0.88291824 0.8965882 prediction 0.900602598892311 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167709603 chr6:167709603 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_49714 0 0 0 0 1 UNC93A chr6:167709520 3'AG 167709520 Downstream 84bp
chr10 88719858 88719858 1 + C T CESC 88719858 + 88719838 88719878 41 GTGGAGGAGGCGGAGAACATCGCGGTCACCTCCGGGGTGGT GTGGAGGAGGCGGAGAACATTGCGGTCACCTCCGGGGTGGT Direct Loss 0.950287662013875 0 0.89732814 0.8955669 prediction 0.90057532402775 Functional Loss - SNCG ENSG00000173267 CDS Human protein_coding chr10:88719858 chr10:88719858 nonsynonymous SNV 0.730 2 21 hm5C_associated_SNPs_49717 0 0 1 0 1 SNCG chr10:88719885 5'GT 88719885 Upstream 28bp
chr17 1650447 1650447 1 + C A UCEC 1650447 + 1650427 1650467 41 GACTGGCTGCCAGGATGTACCTGCAGAAAGGTAGGCGCTGA GACTGGCTGCCAGGATGTACATGCAGAAAGGTAGGCGCTGA Direct Loss 0.950286923265312 0 0.43205547 0.25907865 prediction 0.900573846530624 Functional Loss - SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1650447 chr17:1650447 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_49718 0 0 0 0 1 SERPINF2 chr17:1650456 5'GT 1650456 Upstream 10bp
chr17 61619769 61619769 1 + C T PRAD 61619769 + 61619749 61619789 41 CGGAGAGCTTCTGGAGTAAGCTGGAGGTCACCTTCAACCTG CGGAGAGCTTCTGGAGTAAGTTGGAGGTCACCTTCAACCTG Direct Loss 0.950270578695781 0 0.85948217 0.8599998 prediction 0.900541157391561 Functional Loss - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61619769 chr17:61619769 synonymous SNV . 0 21 hm5C_associated_SNPs_49721 0 0 0 0 1 KCNH6 chr17:61619795 5'GT 61619795 Upstream 27bp
chr10 1046670 1046670 1 + C T BLCA 1046670 + 1046650 1046690 41 CTGGAGGATAGGAACACCATCGAGATGCAGGCCATCACTGC CTGGAGGATAGGAACACCATTGAGATGCAGGCCATCACTGC Direct Loss 0.950224706568835 0 0.7582443 0.43914863 prediction 0.90044941313767 Functional Loss - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1046670 chr10:1046670 synonymous SNV . 0 21 hm5C_associated_SNPs_49729 0 0 1 1 1 GTPBP4 chr10:1046617 3'AG 1046617 Downstream 54bp
chr15 20496644 20496644 1 + C T PAAD 20496644 + 20496624 20496664 41 GAAGGGGAAGCCGAGGGTGCCGAGACCACAAAGCGCCCGGC GAAGGGGAAGCCGAGGGTGCTGAGACCACAAAGCGCCCGGC Direct Loss 0.950196646000069 0 0.8341701 0.7451651 prediction 0.900393292000139 Functional Loss - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20496644 chr15:20496644 . . 0 21 hm5C_associated_SNPs_49731 0 0 0 0 1 CHEK2P2 chr15:20496597 3'AG 20496597 Downstream 48bp
chr6 123319253 123319253 1 + C G CESC 123319253 + 123319233 123319273 41 TCCCTGGGGGCCTGGCCAATCTGGACCACTATGGCAGGAAG TCCCTGGGGGCCTGGCCAATGTGGACCACTATGGCAGGAAG Direct Loss 0.950183284071818 0 0.38277894 0.18166989 prediction 0.900366568143637 Functional Loss - CLVS2 ENSG00000146352 CDS Human protein_coding chr6:123319253 chr6:123319253 nonsynonymous SNV 0.989 1 21 hm5C_associated_SNPs_49733 0 0 0 0 1 CLVS2 chr6:123319311 5'GT 123319311 Upstream 59bp
chr15 65153755 65153755 1 + C T SARC 65153755 + 65153735 65153775 41 CCAGCGACGCCGGCCACCAACGAGAGTCCACCTGAAGGAGG CCAGCGACGCCGGCCACCAATGAGAGTCCACCTGAAGGAGG Direct Loss 0.950166956443287 0 0.89666104 0.8628169 prediction 0.900333912886574 Functional Loss - PLEKHO2 ENSG00000241839;ENSG00000249240 CDS Human other chr15:65153755 chr15:65153755 nonsynonymous SNV 0.454 4 21 hm5C_associated_SNPs_49736 0 0 0 0 2 PLEKHO2 chr15:65153676 3'AG 65153676 Downstream 80bp
chr15 65153755 65153755 1 + C T SARC 65153755 + 65153735 65153775 41 CCAGCGACGCCGGCCACCAACGAGAGTCCACCTGAAGGAGG CCAGCGACGCCGGCCACCAATGAGAGTCCACCTGAAGGAGG Direct Loss 0.950166956443287 0 0.89666104 0.8628169 prediction 0.900333912886574 Functional Loss - PLEKHO2 ENSG00000241839;ENSG00000249240 CDS Human other chr15:65153755 chr15:65153755 nonsynonymous SNV 0.454 4 21 hm5C_associated_SNPs_49736 0 0 0 0 2 PLEKHO2 chr15:65153774 5'GT 65153774 Upstream 20bp
chr16 30199403 30199403 1 + C T UCEC 30199403 + 30199383 30199423 41 GAGGTGAACAAGTGTGAGATCGCCAGGTGACTGACCCCCGG GAGGTGAACAAGTGTGAGATTGCCAGGTGACTGACCCCCGG Direct Loss 0.950161742858057 0 0.9409602 0.9000931 prediction 0.900323485716114 Functional Loss - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30199403 chr16:30199403 synonymous SNV . 0 21 hm5C_associated_SNPs_49737 0 0 0 0 1 CORO1A chr16:30199408 5'GT 30199408 Upstream 6bp
chr16 2522609 2522609 1 + C T COAD 2522609 + 2522589 2522629 41 CATGGCAGCGGGCCACTGCCCGGGAATCCCACGCCTGCCTC CATGGCAGCGGGCCACTGCCTGGGAATCCCACGCCTGCCTC Direct Loss 0.950130399518422 0 0.9076062 0.8884933 prediction 0.900260799036843 Functional Loss - NTN3 ENSG00000162068 CDS Human protein_coding chr16:2522609 chr16:2522609 nonsynonymous SNV 0.924 3 21 hm5C_associated_SNPs_49741 0 0 0 0 1 NTN3 chr16:2522630 5'GT 2522630 Upstream 22bp
chr7 45216936 45216936 1 + C T rs145890722 45216936 + 45216916 45216956 41 CCCAGAGCAGGCGGCTGCAACGAGACAGGCATGTTGGAGAG CCCAGAGCAGGCGGCTGCAATGAGACAGGCATGTTGGAGAG Direct Loss 0.950129259047941 0 0.6767709 0.4058003 prediction 0.900258518095882 Functional Loss - RAMP3 ENSG00000122679 CDS Human protein_coding chr7:45216936 chr7:45216936 synonymous SNV . 0 21 hm5C_associated_SNPs_49742 0 0 0 0 1 RAMP3 chr7:45216908 3'AG 45216908 Downstream 29bp
chr8 21904138 21904138 1 + C T UCEC 21904138 + 21904118 21904158 41 AACAAGAGGGGCAAGCTCATCGGGAAGGTGAGGCTGGGAGA AACAAGAGGGGCAAGCTCATTGGGAAGGTGAGGCTGGGAGA Direct Loss 0.950120831288582 0 0.9124335 0.90061194 prediction 0.900241662577164 Functional Loss - FGF17 ENSG00000158815 CDS Human protein_coding chr8:21904138 chr8:21904138 synonymous SNV . 0 21 hm5C_associated_SNPs_49743 0 0 0 0 1 FGF17 chr8:21904144 5'GT 21904144 Upstream 7bp
chr11 118272366 118272366 1 + C T CESC 118272366 + 118272346 118272386 41 GCGGTTCGGGGCGACGGACTCTCCATTCCAGAACCATGGCC GCGGTTCGGGGCGACGGACTTTCCATTCCAGAACCATGGCC Direct Loss 0.950074039994337 0 0.9565594 0.52852595 prediction 0.900148079988675 Functional Loss - LOC100131626 ENSG00000254873 CDS Human protein_coding chr11:118272366 chr11:118272366 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_49746 0 0 1 0 1 ATP5L chr11:118272432 5'GT 118272432 Upstream 67bp
chr5 172410873 172410873 1 + C G BRCA 172410873 + 172410853 172410893 41 AGGCGGCGACCATGGCGTATCACGGCCTCACTGTGCCTCTC AGGCGGCGACCATGGCGTATGACGGCCTCACTGTGCCTCTC Direct Loss 0.949993317151188 0 0.8222252 0.5470667 prediction 0.899986634302375 Functional Loss - ATP6V0E1 ENSG00000113732 CDS Human protein_coding chr5:172410873 chr5:172410873 nonsynonymous SNV 0.965 0 21 hm5C_associated_SNPs_49751 0 0 1 0 1 ATP6V0E1 chr5:172410967 5'GT 172410967 Upstream 95bp
chr9 137777212 137777212 1 + C T BLCA 137777212 + 137777192 137777232 41 ACGGACGGAGGGGGCTGGACCGTGAGTGTGGGGCTGGGCAG ACGGACGGAGGGGGCTGGACTGTGAGTGTGGGGCTGGGCAG Direct Loss 0.949973862035393 0 0.38503146 0.20720112 prediction 0.899947724070786 Functional Loss - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137777212 chr9:137777212 synonymous SNV . 0 21 hm5C_associated_SNPs_49753 0 0 0 0 1 FCN2 chr9:137777212 5'GT 137777212 Upstream 1bp
chr3 51982335 51982335 1 + C T rs78218556 51982335 + 51982315 51982355 41 TGTGCCCTGCAGATCCGACCCAGGACACTGAGTTGGAGCTG TGTGCCCTGCAGATCCGACCTAGGACACTGAGTTGGAGCTG Direct Loss 0.949957285720709 0 0.89087784 0.8412569 prediction 0.899914571441419 Functional Loss - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51982335 chr3:51982335 stopgain 0.873 0 21 hm5C_associated_SNPs_49754 0 0 0 0 1 PARP3 chr3:51982327 3'AG 51982327 Downstream 9bp
chr14 75469786 75469786 1 + C T BLCA 75469786 + 75469766 75469806 41 GGTGGTGGGCCGCGCAGCTCCGAGGAAATGGCTCGGGAGAC GGTGGTGGGCCGCGCAGCTCTGAGGAAATGGCTCGGGAGAC Direct Loss 0.949907846861164 0 0.86844885 0.7661809 prediction 0.899815693722329 Functional Loss - EIF2B2 ENSG00000119718 CDS Human protein_coding chr14:75469786 chr14:75469786 synonymous SNV . 0 21 hm5C_associated_SNPs_49759 0 0 0 0 1 EIF2B2 chr14:75469856 5'GT 75469856 Upstream 71bp
chr15 23260862 23260862 1 + C T UCEC 23260862 + 23260842 23260882 41 GGAAGTTAGAGCAGTCCATGCGGGAGGAGGCACTACTGAAA GGAAGTTAGAGCAGTCCATGTGGGAGGAGGCACTACTGAAA Direct Loss 0.949873239968058 0 0.8896972 0.8003573 prediction 0.899746479936116 Functional Loss - GOLGA8IP ENSG00000153666 CDS Human other chr15:23260862 chr15:23260862 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_49761 0 0 0 0 2 GOLGA8IP chr15:23260811 3'AG 23260811 Downstream 52bp
chr15 23260862 23260862 1 + C T UCEC 23260862 + 23260842 23260882 41 GGAAGTTAGAGCAGTCCATGCGGGAGGAGGCACTACTGAAA GGAAGTTAGAGCAGTCCATGTGGGAGGAGGCACTACTGAAA Direct Loss 0.949873239968058 0 0.8896972 0.8003573 prediction 0.899746479936116 Functional Loss - GOLGA8IP ENSG00000153666 CDS Human other chr15:23260862 chr15:23260862 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_49761 0 0 0 0 2 GOLGA8IP chr15:23260897 5'GT 23260897 Upstream 36bp
chr19 55177294 55177294 1 + C T SKCM 55177294 + 55177274 55177314 41 AGGCACTGGGAGGTACTGATCGGGGTCTTGGTGGTCTCCAT AGGCACTGGGAGGTACTGATTGGGGTCTTGGTGGTCTCCAT Direct Loss 0.94984472092405 0 0.9678597 0.95255506 prediction 0.8996894418481 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55177294 chr19:55177294 synonymous SNV . 0 21 hm5C_associated_SNPs_49762 0 0 0 0 2 LILRB4 chr19:55177266 3'AG 55177266 Downstream 29bp
chr19 55177294 55177294 1 + C T SKCM 55177294 + 55177274 55177314 41 AGGCACTGGGAGGTACTGATCGGGGTCTTGGTGGTCTCCAT AGGCACTGGGAGGTACTGATTGGGGTCTTGGTGGTCTCCAT Direct Loss 0.94984472092405 0 0.9678597 0.95255506 prediction 0.8996894418481 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55177294 chr19:55177294 synonymous SNV . 0 21 hm5C_associated_SNPs_49762 0 0 0 0 2 LILRB4 chr19:55177382 5'GT 55177382 Upstream 89bp
chr19 49439416 49439416 1 + C T UCEC 49439416 + 49439396 49439436 41 GCGGAAGTTCGCGAGATGGTCGCGGAGGCCCGATCCCGAGC GCGGAAGTTCGCGAGATGGTTGCGGAGGCCCGATCCCGAGC Direct Loss 0.949838433944794 0 0.901459 0.4362083 prediction 0.899676867889588 Functional Loss - DHDH ENSG00000104808 CDS Human protein_coding chr19:49439416 chr19:49439416 synonymous SNV . 0 21 hm5C_associated_SNPs_49764 0 0 0 0 1 DHDH chr19:49439452 5'GT 49439452 Upstream 37bp
chr17 18345569 18345569 1 + C T rs531898090 18345569 + 18345549 18345589 41 GTGAGATGGAGCAGCAGAGCCGGGAGTACCAGATCTTGCTG GTGAGATGGAGCAGCAGAGCTGGGAGTACCAGATCTTGCTG Direct Loss 0.949832293297595 0 0.9164357 0.7763506 prediction 0.899664586595191 Functional Loss - KRT16P1 ENSG00000214856 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:18345569 chr17:18345569 . . 0 21 hm5C_associated_SNPs_49765 0 0 0 0 1 KRT16P1 chr17:18345657 5'GT 18345657 Upstream 89bp
chr1 99730142 99730142 1 + C T UCEC 99730142 + 99730122 99730162 41 AGGACGCAGACCCGGGCAGGCGGCAGGGATGTCGGCGAAGG AGGACGCAGACCCGGGCAGGTGGCAGGGATGTCGGCGAAGG Direct Loss 0.949813674899601 0 0.6686874 0.5496305 prediction 0.899627349799202 Functional Loss - PLPPR4 ENSG00000117600 CDS Human protein_coding chr1:99730142 chr1:99730142 nonsynonymous SNV 0.976 0 21 hm5C_associated_SNPs_49767 0 0 0 0 1 PLPPR4 chr1:99730227 5'GT 99730227 Upstream 86bp
chr19 50905323 50905323 1 + C T COAD 50905323 + 50905303 50905343 41 GCCATCAGCCGGGACAGTCGCGGGGGGAGGGAGCTGACTGG GCCATCAGCCGGGACAGTCGTGGGGGGAGGGAGCTGACTGG Direct Loss 0.949808772014576 0 0.9447633 0.9298469 prediction 0.899617544029152 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905323 chr19:50905323 synonymous SNV . 0 21 hm5C_associated_SNPs_49768 1 0 1 0 1 POLD1 chr19:50905256 3'AG 50905256 Downstream 68bp
chr16 75256679 75256679 1 + C T STAD 75256679 + 75256659 75256699 41 CCCCCAGGCTGCGGGGTCCCCGCCATCCACCCTGTGCTCAG CCCCCAGGCTGCGGGGTCCCTGCCATCCACCCTGTGCTCAG Direct Loss 0.949806484472754 0 0.09059769 0.038892984 prediction 0.899612968945507 Functional Loss - CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256679 chr16:75256679 synonymous SNV . 0 21 hm5C_associated_SNPs_49769 0 0 0 0 2 CTRB1 chr16:75256666 3'AG 75256666 Downstream 14bp
chr16 75256679 75256679 1 + C T STAD 75256679 + 75256659 75256699 41 CCCCCAGGCTGCGGGGTCCCCGCCATCCACCCTGTGCTCAG CCCCCAGGCTGCGGGGTCCCTGCCATCCACCCTGTGCTCAG Direct Loss 0.949806484472754 0 0.09059769 0.038892984 prediction 0.899612968945507 Functional Loss - CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256679 chr16:75256679 synonymous SNV . 0 21 hm5C_associated_SNPs_49769 0 0 0 0 2 CTRB1 chr16:75256769 5'GT 75256769 Upstream 91bp
chr12 113875765 113875765 1 + C A rs146573098 113875765 + 113875745 113875785 41 ACTCAGGCCTCCTGCGGAGGCTCCAGGCCGAGGGCTGCCTG ACTCAGGCCTCCTGCGGAGGATCCAGGCCGAGGGCTGCCTG Direct Loss 0.949803276783287 0 0.9261711 0.8423704 prediction 0.899606553566574 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113875765 chr12:113875765 nonsynonymous SNV 0.655 5 21 hm5C_associated_SNPs_49771 0 0 0 0 1 SDSL chr12:113875691 3'AG 113875691 Downstream 75bp
chr16 2577803 2577803 1 + C T STAD 2577803 + 2577783 2577823 41 TGGAGGGCCCCTTCATCAGCCGGGAGAAGCGGGGCGCGCAC TGGAGGGCCCCTTCATCAGCTGGGAGAAGCGGGGCGCGCAC Direct Loss 0.949802876535509 0 0.9261349 0.9031585 prediction 0.899605753071018 Functional Loss - AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2577803 chr16:2577803 nonsynonymous SNV 0.973 3 21 hm5C_associated_SNPs_49772 0 0 1 0 1 AMDHD2 chr16:2577774 3'AG 2577774 Downstream 30bp
chr19 13869757 13869757 1 + C A rs10425445 13869757 + 13869737 13869777 41 GCCAACTGCGACTACGTGATCGTGAGTGGCGCCCAGCGCAA GCCAACTGCGACTACGTGATAGTGAGTGGCGCCCAGCGCAA Direct Loss 0.949768759293967 0 0.6141389 0.23251048 prediction 0.899537518587935 Functional Loss - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13869757 chr19:13869757 synonymous SNV . 0 21 hm5C_associated_SNPs_49777 0 0 1 0 2 CCDC130 chr19:13869682 3'AG 13869682 Downstream 76bp
chr19 13869757 13869757 1 + C A rs10425445 13869757 + 13869737 13869777 41 GCCAACTGCGACTACGTGATCGTGAGTGGCGCCCAGCGCAA GCCAACTGCGACTACGTGATAGTGAGTGGCGCCCAGCGCAA Direct Loss 0.949768759293967 0 0.6141389 0.23251048 prediction 0.899537518587935 Functional Loss - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13869757 chr19:13869757 synonymous SNV . 0 21 hm5C_associated_SNPs_49777 0 0 1 0 2 CCDC130 chr19:13869824 5'GT 13869824 Upstream 68bp
chr2 96936907 96936907 1 + C T SKCM 96936907 + 96936887 96936927 41 ATGACGCGATCCGCGTGTTTCAGGAGGATCCCAACTCGGAT ATGACGCGATCCGCGTGTTTTAGGAGGATCCCAACTCGGAT Direct Loss 0.949741645480601 0 0.9472948 0.91739595 prediction 0.899483290961201 Functional Loss - CIAO1 ENSG00000144021 CDS Human protein_coding chr2:96936907 chr2:96936907 stopgain 0.997 1 21 hm5C_associated_SNPs_49779 0 0 1 0 1 CIAO1 chr2:96936849 3'AG 96936849 Downstream 59bp
chrX 47104862 47104862 1 + C T OV 47104862 + 47104842 47104882 41 TCTTCACCACTGTGGAGACCCTGGAGAAGGAAAACCCCTGG TCTTCACCACTGTGGAGACCTTGGAGAAGGAAAACCCCTGG Direct Loss 0.949661474666144 0 0.41956857 0.33078295 prediction 0.899322949332287 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47104862 chrX:47104862 synonymous SNV . 0 21 hm5C_associated_SNPs_49783 0 0 1 0 2 USP11 chrX:47104769 3'AG 47104769 Downstream 94bp
chrX 47104862 47104862 1 + C T OV 47104862 + 47104842 47104882 41 TCTTCACCACTGTGGAGACCCTGGAGAAGGAAAACCCCTGG TCTTCACCACTGTGGAGACCTTGGAGAAGGAAAACCCCTGG Direct Loss 0.949661474666144 0 0.41956857 0.33078295 prediction 0.899322949332287 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47104862 chrX:47104862 synonymous SNV . 0 21 hm5C_associated_SNPs_49783 0 0 1 0 2 USP11 chrX:47104881 5'GT 47104881 Upstream 20bp
chr7 128371246 128371246 1 + C T rs41274144 128371246 + 128371226 128371266 41 TTCAGCTGCTGAGGGATTATCGGGATGGAGAGTAGGAGAAA TTCAGCTGCTGAGGGATTATTGGGATGGAGAGTAGGAGAAA Direct Loss 0.949660719939488 0 0.9264121 0.90635085 prediction 0.899321439878977 Functional Loss - FAM71F1 ENSG00000135248 UTR3 Human protein_coding chr7:128371246 chr7:128371246 . . 0 21 hm5C_associated_SNPs_49784 0 0 0 0 1 FAM71F1 chr7:128371154 3'AG 128371154 Downstream 93bp
chr17 72345464 72345464 1 + C T rs114774679 72345464 + 72345444 72345484 41 AGGCCCGGGGCCGGCAGGATCGGGGTGACATCCGCCACATC AGGCCCGGGGCCGGCAGGATTGGGGTGACATCCGCCACATC Direct Loss 0.949646684572276 0 0.96947384 0.9497185 prediction 0.899293369144551 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72345464 chr17:72345464 nonsynonymous SNV 0.277 2 21 hm5C_associated_SNPs_49785 0 0 0 0 1 KIF19 chr17:72345488 5'GT 72345488 Upstream 25bp
chr11 66272127 66272127 1 + C T UCEC 66272127 + 66272107 66272147 41 GCCGGAGGGCGGGCCCTGTACGAGGGGTATGCAACAGTCAC GCCGGAGGGCGGGCCCTGTATGAGGGGTATGCAACAGTCAC Direct Loss 0.949631477907269 0 0.91690004 0.8996405 prediction 0.899262955814538 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66272127 chr11:66272127 synonymous SNV . 0 21 hm5C_associated_SNPs_49787 0 0 1 0 1 DPP3 chr11:66272083 3'AG 66272083 Downstream 45bp
chr12 7475097 7475097 1 + C T UCEC 7475097 + 7475077 7475117 41 GGAGCAGTGGAGGGTGCAAACTGGGCTGGAGCTATATGAGG GGAGCAGTGGAGGGTGCAAATTGGGCTGGAGCTATATGAGG Direct Loss 0.949575442173592 0 0.88285744 0.8527958 prediction 0.899150884347183 Functional Loss - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7475097 chr12:7475097 nonsynonymous SNV 0.944 3 21 hm5C_associated_SNPs_49794 0 0 0 0 2 ACSM4 chr12:7475014 3'AG 7475014 Downstream 84bp
chr12 7475097 7475097 1 + C T UCEC 7475097 + 7475077 7475117 41 GGAGCAGTGGAGGGTGCAAACTGGGCTGGAGCTATATGAGG GGAGCAGTGGAGGGTGCAAATTGGGCTGGAGCTATATGAGG Direct Loss 0.949575442173592 0 0.88285744 0.8527958 prediction 0.899150884347183 Functional Loss - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7475097 chr12:7475097 nonsynonymous SNV 0.944 3 21 hm5C_associated_SNPs_49794 0 0 0 0 2 ACSM4 chr12:7475137 5'GT 7475137 Upstream 41bp
chr5 128430720 128430720 1 + C T BLCA 128430720 + 128430700 128430740 41 GTGGACTTGCCCAAGGGCTTCGCGGTGAGCGAGCGCTGCAA GTGGACTTGCCCAAGGGCTTTGCGGTGAGCGAGCGCTGCAA Direct Loss 0.949569753785194 0 0.57919854 0.5229227 prediction 0.899139507570388 Functional Loss - ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128430720 chr5:128430720 synonymous SNV . 0 21 hm5C_associated_SNPs_49796 0 0 1 0 1 ISOC1 chr5:128430768 5'GT 128430768 Upstream 49bp
chr1 3669271 3669271 1 + C T COAD 3669271 + 3669251 3669291 41 TCCTCCAGAGCATGGCCAGCCGGGACGCCCGGTGCCCAGAA TCCTCCAGAGCATGGCCAGCTGGGACGCCCGGTGCCCAGAA Direct Loss 0.949537641417239 0 0.93650055 0.90837985 prediction 0.899075282834477 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3669271 chr1:3669271 nonsynonymous SNV 0.018 3 21 hm5C_associated_SNPs_49799 0 0 0 0 1 CCDC27 chr1:3669363 5'GT 3669363 Upstream 93bp
chr19 52856992 52856992 1 + C G rs115821660 52856992 + 52856972 52857012 41 CTCAGGAGGAGTGGAAATCCCTGGACCCTGGACAGAGGGCT CTCAGGAGGAGTGGAAATCCGTGGACCCTGGACAGAGGGCT Direct Loss 0.949534243543406 0 0.43205428 0.41602567 prediction 0.899068487086812 Functional Loss - ZNF610 ENSG00000167554 CDS Human protein_coding chr19:52856992 chr19:52856992 nonsynonymous SNV 0.024 3 21 hm5C_associated_SNPs_49800 0 0 0 0 2 ZNF610 chr19:52856935 3'AG 52856935 Downstream 58bp
chr19 52856992 52856992 1 + C G rs115821660 52856992 + 52856972 52857012 41 CTCAGGAGGAGTGGAAATCCCTGGACCCTGGACAGAGGGCT CTCAGGAGGAGTGGAAATCCGTGGACCCTGGACAGAGGGCT Direct Loss 0.949534243543406 0 0.43205428 0.41602567 prediction 0.899068487086812 Functional Loss - ZNF610 ENSG00000167554 CDS Human protein_coding chr19:52856992 chr19:52856992 nonsynonymous SNV 0.024 3 21 hm5C_associated_SNPs_49800 0 0 0 0 2 ZNF610 chr19:52857061 5'GT 52857061 Upstream 70bp
chr3 122578975 122578975 1 + C T READ 122578975 + 122578955 122578995 41 AATTCTTCTCCTCCTGTTTTCGGGAGCTACACTGTCATCCA AATTCTTCTCCTCCTGTTTTTGGGAGCTACACTGTCATCCA Direct Loss 0.949531713320992 0 0.9500934 0.8455205 prediction 0.899063426641983 Functional Loss - DIRC2 ENSG00000138463 CDS Human protein_coding chr3:122578975 chr3:122578975 nonsynonymous SNV 0.994 1 21 hm5C_associated_SNPs_49801 0 0 0 0 2 DIRC2 chr3:122578922 3'AG 122578922 Downstream 54bp
chr3 122578975 122578975 1 + C T READ 122578975 + 122578955 122578995 41 AATTCTTCTCCTCCTGTTTTCGGGAGCTACACTGTCATCCA AATTCTTCTCCTCCTGTTTTTGGGAGCTACACTGTCATCCA Direct Loss 0.949531713320992 0 0.9500934 0.8455205 prediction 0.899063426641983 Functional Loss - DIRC2 ENSG00000138463 CDS Human protein_coding chr3:122578975 chr3:122578975 nonsynonymous SNV 0.994 1 21 hm5C_associated_SNPs_49801 0 0 0 0 2 DIRC2 chr3:122579049 5'GT 122579049 Upstream 75bp
chr19 41510037 41510037 1 + C T SKCM 41510037 + 41510017 41510057 41 TTCTCTGGCCGGGGAAAAATCGCCATGGTCGACCCATTCTT TTCTCTGGCCGGGGAAAAATTGCCATGGTCGACCCATTCTT Direct Loss 0.949493718051738 0 0.91701746 0.7685511 prediction 0.898987436103476 Functional Loss - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41510037 chr19:41510037 synonymous SNV . 0 21 hm5C_associated_SNPs_49803 0 0 0 0 1 CYP2B6 chr19:41510068 5'GT 41510068 Upstream 32bp
chr17 8170154 8170154 1 + C G HNSC 8170154 + 8170134 8170174 41 CCCAGGTGCTGAAGCGTTACCGGGATGCTGGCCTCCATTGC CCCAGGTGCTGAAGCGTTACGGGGATGCTGGCCTCCATTGC Direct Loss 0.949488458768774 0 0.9065128 0.899154 prediction 0.898976917537548 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8170154 chr17:8170154 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_49804 0 0 1 0 2 PFAS chr17:8170071 3'AG 8170071 Downstream 84bp
chr17 8170154 8170154 1 + C G HNSC 8170154 + 8170134 8170174 41 CCCAGGTGCTGAAGCGTTACCGGGATGCTGGCCTCCATTGC CCCAGGTGCTGAAGCGTTACGGGGATGCTGGCCTCCATTGC Direct Loss 0.949488458768774 0 0.9065128 0.899154 prediction 0.898976917537548 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8170154 chr17:8170154 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_49804 0 0 1 0 2 PFAS chr17:8170216 5'GT 8170216 Upstream 63bp
chr17 6930105 6930105 1 + C T SKCM 6930105 + 6930085 6930125 41 AACGCACAGCCGCATCCATTCGGGAGAGAAGCCGTATAAGT AACGCACAGCCGCATCCATTTGGGAGAGAAGCCGTATAAGT Direct Loss 0.949483920409546 0 0.9192504 0.6452367 prediction 0.898967840819092 Functional Loss - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6930105 chr17:6930105 nonsynonymous SNV 0.984 2 21 hm5C_associated_SNPs_49805 0 0 0 0 2 BCL6B chr17:6930024 3'AG 6930024 Downstream 82bp
chr17 6930105 6930105 1 + C T SKCM 6930105 + 6930085 6930125 41 AACGCACAGCCGCATCCATTCGGGAGAGAAGCCGTATAAGT AACGCACAGCCGCATCCATTTGGGAGAGAAGCCGTATAAGT Direct Loss 0.949483920409546 0 0.9192504 0.6452367 prediction 0.898967840819092 Functional Loss - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6930105 chr17:6930105 nonsynonymous SNV 0.984 2 21 hm5C_associated_SNPs_49805 0 0 0 0 2 BCL6B chr17:6930154 5'GT 6930154 Upstream 50bp
chr11 70281208 70281208 1 + C T COAD 70281208 + 70281188 70281228 41 ATTGACGACGGCTGGTGGCGCGGGGTGTGCAAGGGCCGGTA ATTGACGACGGCTGGTGGCGTGGGGTGTGCAAGGGCCGGTA Direct Loss 0.949471916809061 0 0.9182441 0.8044447 prediction 0.898943833618122 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70281208 chr11:70281208 synonymous SNV . 0 21 hm5C_associated_SNPs_49807 0 0 1 0 2 CTTN chr11:70281132 3'AG 70281132 Downstream 77bp
chr11 70281208 70281208 1 + C T COAD 70281208 + 70281188 70281228 41 ATTGACGACGGCTGGTGGCGCGGGGTGTGCAAGGGCCGGTA ATTGACGACGGCTGGTGGCGTGGGGTGTGCAAGGGCCGGTA Direct Loss 0.949471916809061 0 0.9182441 0.8044447 prediction 0.898943833618122 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70281208 chr11:70281208 synonymous SNV . 0 21 hm5C_associated_SNPs_49807 0 0 1 0 2 CTTN chr11:70281225 5'GT 70281225 Upstream 18bp
chr11 1861788 1861788 1 + C A READ 1861788 + 1861768 1861808 41 TGCAGATAGCGGCCACGGAGCTGGAGAAGGAGGAGAGCCGC TGCAGATAGCGGCCACGGAGATGGAGAAGGAGGAGAGCCGC Direct Loss 0.949464222854616 0 0.42857462 0.34142536 prediction 0.898928445709232 Functional Loss - TNNI2 ENSG00000130598 CDS Human protein_coding chr11:1861788 chr11:1861788 nonsynonymous SNV 0.601 2 21 hm5C_associated_SNPs_49808 0 0 0 0 1 TNNI2 chr11:1861886 5'GT 1861886 Upstream 99bp
chr15 45898653 45898653 1 + C T UCEC 45898653 + 45898633 45898673 41 AGTTGGAAAGGGAGCAGCAACGAGAGAAGGAGTTTGAAAGA AGTTGGAAAGGGAGCAGCAATGAGAGAAGGAGTTTGAAAGA Direct Loss 0.949444293800336 0 0.8464613 0.86293495 prediction 0.898888587600673 Functional Loss - BLOC1S6 ENSG00000104164 CDS Human protein_coding chr15:45898653 chr15:45898653 stopgain 0.999 1 21 hm5C_associated_SNPs_49811 0 0 1 0 1 BLOC1S6 chr15:45898593 3'AG 45898593 Downstream 61bp
chr20 43550282 43550282 1 + C T COAD 43550282 + 43550262 43550302 41 GTGAGCGGGCGGCTGCTGTACGCGGGCCGGGCCCAAAAGCG GTGAGCGGGCGGCTGCTGTATGCGGGCCGGGCCCAAAAGCG Direct Loss 0.949433095281497 0 0.44637048 0.40361 prediction 0.898866190562995 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43550282 chr20:43550282 synonymous SNV . 0 21 hm5C_associated_SNPs_49813 0 0 1 0 2 PABPC1L chr20:43550235 3'AG 43550235 Downstream 48bp
chr20 43550282 43550282 1 + C T COAD 43550282 + 43550262 43550302 41 GTGAGCGGGCGGCTGCTGTACGCGGGCCGGGCCCAAAAGCG GTGAGCGGGCGGCTGCTGTATGCGGGCCGGGCCCAAAAGCG Direct Loss 0.949433095281497 0 0.44637048 0.40361 prediction 0.898866190562995 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43550282 chr20:43550282 synonymous SNV . 0 21 hm5C_associated_SNPs_49813 0 0 1 0 2 PABPC1L chr20:43550372 5'GT 43550372 Upstream 91bp
chr19 48258667 48258667 1 + C A rs565290384 48258667 + 48258647 48258687 41 CAGGAGCTGTTCCGGCTGCGCGGGATCAAGGCCCAGGTGGC CAGGAGCTGTTCCGGCTGCGAGGGATCAAGGCCCAGGTGGC Direct Loss 0.94942106846171 0 0.9111283 0.92683053 prediction 0.898842136923419 Functional Loss - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48258667 chr19:48258667 synonymous SNV . 0 21 hm5C_associated_SNPs_49814 0 0 1 0 1 NOP53 chr19:48258605 3'AG 48258605 Downstream 63bp
chr9 4685060 4685060 1 + C T UCEC 4685060 + 4685040 4685080 41 CAGTATCAGAACTGAGGCAACGGGAAGAAGAGTGGCGACAG CAGTATCAGAACTGAGGCAATGGGAAGAAGAGTGGCGACAG Direct Loss 0.949379085981009 0 0.8687649 0.84103906 prediction 0.898758171962017 Functional Loss - CDC37L1 ENSG00000106993 CDS Human protein_coding chr9:4685060 chr9:4685060 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_49818 0 0 0 0 1 CDC37L1 chr9:4685158 5'GT 4685158 Upstream 99bp
chr20 53260081 53260081 1 + C T COAD 53260081 + 53260061 53260101 41 CCTACTGGCAGCACATCACACGGCAGCACAGCACGGGACAG CCTACTGGCAGCACATCACATGGCAGCACAGCACGGGACAG Direct Loss 0.949377795864312 0 0.49147493 0.5482161 prediction 0.898755591728624 Functional Loss - DOK5 ENSG00000101134 CDS Human protein_coding chr20:53260081 chr20:53260081 nonsynonymous SNV 0.982 5 21 hm5C_associated_SNPs_49819 0 0 0 0 2 DOK5 chr20:53259997 3'AG 53259997 Downstream 85bp
chr20 53260081 53260081 1 + C T COAD 53260081 + 53260061 53260101 41 CCTACTGGCAGCACATCACACGGCAGCACAGCACGGGACAG CCTACTGGCAGCACATCACATGGCAGCACAGCACGGGACAG Direct Loss 0.949377795864312 0 0.49147493 0.5482161 prediction 0.898755591728624 Functional Loss - DOK5 ENSG00000101134 CDS Human protein_coding chr20:53260081 chr20:53260081 nonsynonymous SNV 0.982 5 21 hm5C_associated_SNPs_49819 0 0 0 0 2 DOK5 chr20:53260117 5'GT 53260117 Upstream 37bp
chr1 229431652 229431652 1 + C T PRAD 229431652 + 229431632 229431672 41 GCTCTCCTCGTCTATGATATCACCAGGTAATGCCAGCTCCC GCTCTCCTCGTCTATGATATTACCAGGTAATGCCAGCTCCC Direct Loss 0.949377508362688 0 0.517538 0.47639072 prediction 0.898755016725375 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229431652 chr1:229431652 synonymous SNV 1.000 0 21 hm5C_associated_SNPs_49820 0 0 1 2 2 RAB4A chr1:229431595 3'AG 229431595 Downstream 58bp
chr1 229431652 229431652 1 + C T PRAD 229431652 + 229431632 229431672 41 GCTCTCCTCGTCTATGATATCACCAGGTAATGCCAGCTCCC GCTCTCCTCGTCTATGATATTACCAGGTAATGCCAGCTCCC Direct Loss 0.949377508362688 0 0.517538 0.47639072 prediction 0.898755016725375 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229431652 chr1:229431652 synonymous SNV 1.000 0 21 hm5C_associated_SNPs_49820 0 0 1 2 2 RAB4A chr1:229431657 5'GT 229431657 Upstream 6bp
chr19 54403952 54403952 1 + C T LUAD 54403952 + 54403932 54403972 41 TGTAAGGAGAACGTCTTCCCCGGGACGACAACCCGCACCTT TGTAAGGAGAACGTCTTCCCTGGGACGACAACCCGCACCTT Direct Loss 0.949371047322163 0 0.9038191 0.84708655 prediction 0.898742094644326 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403952 chr19:54403952 synonymous SNV . 0 21 hm5C_associated_SNPs_49822 0 0 0 0 2 PRKCG chr19:54403865 3'AG 54403865 Downstream 88bp
chr19 54403952 54403952 1 + C T LUAD 54403952 + 54403932 54403972 41 TGTAAGGAGAACGTCTTCCCCGGGACGACAACCCGCACCTT TGTAAGGAGAACGTCTTCCCTGGGACGACAACCCGCACCTT Direct Loss 0.949371047322163 0 0.9038191 0.84708655 prediction 0.898742094644326 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403952 chr19:54403952 synonymous SNV . 0 21 hm5C_associated_SNPs_49822 0 0 0 0 2 PRKCG chr19:54404003 5'GT 54404003 Upstream 52bp
chr9 2622264 2622264 1 + C T rs532555108 2622264 + 2622244 2622284 41 CCCCGGGAGAGCGGCGCCACCGGAACCGGTGAGTGAGGACG CCCCGGGAGAGCGGCGCCACTGGAACCGGTGAGTGAGGACG Direct Loss 0.94935053921352 0 0.7693813 0.38384157 prediction 0.898701078427039 Functional Loss - VLDLR ENSG00000147852 CDS Human other chr9:2622264 chr9:2622264 synonymous SNV . 0 21 hm5C_associated_SNPs_49826 1 0 0 0 1 VLDLR chr9:2622271 5'GT 2622271 Upstream 8bp
chr11 118851338 118851338 1 + C T rs557694929 118851338 + 118851318 118851358 41 ACACGGCCTCGATCTTGCCTCTGGAAGTTGACCGAGGAGGG ACACGGCCTCGATCTTGCCTTTGGAAGTTGACCGAGGAGGG Direct Loss 0.949336882228008 0 0.25959104 0.2917717 prediction 0.898673764456016 Functional Loss - FOXR1 ENSG00000176302 CDS Human protein_coding chr11:118851338 chr11:118851338 synonymous SNV . 0 21 hm5C_associated_SNPs_49827 0 0 0 0 1 FOXR1 chr11:118851278 3'AG 118851278 Downstream 61bp
chr3 8590323 8590323 1 + C T UCEC 8590323 + 8590303 8590343 41 GCACAGAGGGTGCCTTTTACCGCCGCCGCCAGCTCATGCAC GCACAGAGGGTGCCTTTTACTGCCGCCGCCAGCTCATGCAC Direct Loss 0.949308637563505 0 0.90064645 0.5276713 prediction 0.898617275127011 Functional Loss - LMCD1 ENSG00000071282 CDS Human protein_coding chr3:8590323 chr3:8590323 nonsynonymous SNV 0.967 5 21 hm5C_associated_SNPs_49829 0 0 0 0 1 LMCD1 chr3:8590254 3'AG 8590254 Downstream 70bp
chr21 42694901 42694901 1 + C T STAD 42694901 + 42694881 42694921 41 CTCCTTGTGTGCCTGGTATTCGGGGTACCTGCTCGCAGAGC CTCCTTGTGTGCCTGGTATTTGGGGTACCTGCTCGCAGAGC Direct Loss 0.949292546272437 0 0.9706776 0.9430872 prediction 0.898585092544875 Functional Loss - FAM3B ENSG00000183844 CDS Human protein_coding chr21:42694901 chr21:42694901 nonsynonymous SNV 0.059 0 21 hm5C_associated_SNPs_49831 0 0 1 0 2 FAM3B chr21:42694850 3'AG 42694850 Downstream 52bp
chr21 42694901 42694901 1 + C T STAD 42694901 + 42694881 42694921 41 CTCCTTGTGTGCCTGGTATTCGGGGTACCTGCTCGCAGAGC CTCCTTGTGTGCCTGGTATTTGGGGTACCTGCTCGCAGAGC Direct Loss 0.949292546272437 0 0.9706776 0.9430872 prediction 0.898585092544875 Functional Loss - FAM3B ENSG00000183844 CDS Human protein_coding chr21:42694901 chr21:42694901 nonsynonymous SNV 0.059 0 21 hm5C_associated_SNPs_49831 0 0 1 0 2 FAM3B chr21:42694993 5'GT 42694993 Upstream 93bp
chr11 67377938 67377938 1 + C T UCEC 67377938 + 67377918 67377958 41 TTTGACGTGTTTGTGGTGCGCGGGGCTGGGGCCTACATCTG TTTGACGTGTTTGTGGTGCGTGGGGCTGGGGCCTACATCTG Direct Loss 0.949267732823882 0 0.8716597 0.53226644 prediction 0.898535465647763 Functional Loss - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67377938 chr11:67377938 synonymous SNV . 0 21 hm5C_associated_SNPs_49836 0 0 1 0 1 NDUFV1 chr11:67377852 3'AG 67377852 Downstream 87bp
chr16 58538323 58538323 1 + C T rs199725657 58538323 + 58538303 58538343 41 CCCAGCGTGGTGCAGCATTTCGGGTGAGTCCCCGCACAGCC CCCAGCGTGGTGCAGCATTTTGGGTGAGTCCCCGCACAGCC Direct Loss 0.94924535677427 0 0.942976 0.9175142 prediction 0.898490713548539 Functional Loss - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58538323 chr16:58538323 synonymous SNV . 0 21 hm5C_associated_SNPs_49839 0 0 0 0 2 NDRG4 chr16:58538263 3'AG 58538263 Downstream 61bp
chr16 58538323 58538323 1 + C T rs199725657 58538323 + 58538303 58538343 41 CCCAGCGTGGTGCAGCATTTCGGGTGAGTCCCCGCACAGCC CCCAGCGTGGTGCAGCATTTTGGGTGAGTCCCCGCACAGCC Direct Loss 0.94924535677427 0 0.942976 0.9175142 prediction 0.898490713548539 Functional Loss - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58538323 chr16:58538323 synonymous SNV . 0 21 hm5C_associated_SNPs_49839 0 0 0 0 2 NDRG4 chr16:58538325 5'GT 58538325 Upstream 3bp
chr6 121768052 121768052 1 + C T LGG 121768052 + 121768032 121768072 41 GGTTCAAGCCTACTCAACTGCTGGAGGGAAGGTGTGGCTGT GGTTCAAGCCTACTCAACTGTTGGAGGGAAGGTGTGGCTGT Direct Loss 0.949235686194976 0 0.28068376 0.38408965 prediction 0.898471372389953 Functional Loss - GJA1 ENSG00000152661 CDS Human protein_coding chr6:121768052 chr6:121768052 nonsynonymous SNV 0.773 2 21 hm5C_associated_SNPs_49842 0 0 0 0 2 GJA1 chr6:121767978 3'AG 121767978 Downstream 75bp
chr6 121768052 121768052 1 + C T LGG 121768052 + 121768032 121768072 41 GGTTCAAGCCTACTCAACTGCTGGAGGGAAGGTGTGGCTGT GGTTCAAGCCTACTCAACTGTTGGAGGGAAGGTGTGGCTGT Direct Loss 0.949235686194976 0 0.28068376 0.38408965 prediction 0.898471372389953 Functional Loss - GJA1 ENSG00000152661 CDS Human protein_coding chr6:121768052 chr6:121768052 nonsynonymous SNV 0.773 2 21 hm5C_associated_SNPs_49842 0 0 0 0 2 GJA1 chr6:121768070 5'GT 121768070 Upstream 19bp
chr15 41657766 41657766 1 + C G BLCA 41657766 + 41657746 41657786 41 ACTCAAGCGCTCTGCTATCTCTGCAGCTAAAACGGGTGTCA ACTCAAGCGCTCTGCTATCTGTGCAGCTAAAACGGGTGTCA Direct Loss 0.949226642206137 0 0.38034594 0.2522686 prediction 0.898453284412274 Functional Loss - NUSAP1 ENSG00000137804 CDS Human protein_coding chr15:41657766 chr15:41657766 nonsynonymous SNV 0.003 4 21 hm5C_associated_SNPs_49843 0 0 1 0 1 NUSAP1 chr15:41657787 5'GT 41657787 Upstream 22bp
chr6 134785920 134785920 1 + C A rs573455641 134785920 + 134785900 134785940 41 CGCCTCACACTGTGACACAGCGGGAGAGCCCAGAGCGACAG CGCCTCACACTGTGACACAGAGGGAGAGCCCAGAGCGACAG Direct Loss 0.949198039392091 0 0.86538494 0.6984204 prediction 0.898396078784181 Functional Loss - LINC01010 ENSG00000236700 ncRNA_exonic Human lincRNA chr6:134785920 chr6:134785920 . . 0 21 hm5C_associated_SNPs_49846 0 0 0 0 1 LINC01010 chr6:134785987 5'GT 134785987 Upstream 68bp
chr18 907687 907687 1 + C T UCEC 907687 + 907667 907707 41 GAAGAGGCGTACGGCGAGGACGGAAACCCGCTGCCAGACTT GAAGAGGCGTACGGCGAGGATGGAAACCCGCTGCCAGACTT Direct Loss 0.949197691269155 0 0.36641267 0.21949345 prediction 0.898395382538311 Functional Loss - ADCYAP1 ENSG00000141433 CDS Human protein_coding chr18:907687 chr18:907687 synonymous SNV . 0 21 hm5C_associated_SNPs_49847 0 0 0 0 1 ADCYAP1 chr18:907660 3'AG 907660 Downstream 28bp
chr1 167666990 167666990 1 + C T UCEC 167666990 + 167666970 167667010 41 AACAACAGGAGGGGGCAGTGCTCGAGCCAGGCTGCAGCCCC AACAACAGGAGGGGGCAGTGTTCGAGCCAGGCTGCAGCCCC Direct Loss 0.949196129077405 0 0.29601222 0.3992822 prediction 0.898392258154809 Functional Loss - RCSD1 ENSG00000198771 CDS Human protein_coding chr1:167666990 chr1:167666990 nonsynonymous SNV 0.033 1 21 hm5C_associated_SNPs_49848 0 0 0 0 1 RCSD1 chr1:167667079 5'GT 167667079 Upstream 90bp
chr16 842299 842299 1 + C T UCEC 842299 + 842279 842319 41 GAGTCGGTGCTGGGTGCTGGCGGGAAGCCCAACTGCCTGGT GAGTCGGTGCTGGGTGCTGGTGGGAAGCCCAACTGCCTGGT Direct Loss 0.949187483626333 0 0.89699584 0.87508225 prediction 0.898374967252666 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842299 chr16:842299 synonymous SNV . 0 21 hm5C_associated_SNPs_49849 0 0 1 0 2 CHTF18 chr16:842224 3'AG 842224 Downstream 76bp
chr16 842299 842299 1 + C T UCEC 842299 + 842279 842319 41 GAGTCGGTGCTGGGTGCTGGCGGGAAGCCCAACTGCCTGGT GAGTCGGTGCTGGGTGCTGGTGGGAAGCCCAACTGCCTGGT Direct Loss 0.949187483626333 0 0.89699584 0.87508225 prediction 0.898374967252666 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842299 chr16:842299 synonymous SNV . 0 21 hm5C_associated_SNPs_49849 0 0 1 0 2 CHTF18 chr16:842367 5'GT 842367 Upstream 69bp
chr16 56782275 56782275 1 + C T UCEC 56782275 + 56782255 56782295 41 CTTACAGGAGATCCAGCAGGCGGGAGAGCGCCTGCGTTCCC CTTACAGGAGATCCAGCAGGTGGGAGAGCGCCTGCGTTCCC Direct Loss 0.949182265933715 0 0.81363654 0.7741151 prediction 0.898364531867431 Functional Loss - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56782275 chr16:56782275 nonsynonymous SNV 0.987 3 21 hm5C_associated_SNPs_49850 0 0 1 0 1 NUP93 chr16:56782338 5'GT 56782338 Upstream 64bp
chr16 67927192 67927192 1 + C T rs7196964 67927192 + 67927172 67927212 41 CCCGAGAATGGCGGCGGCGGCGGCGGCGGCGGCGGCCGCTG CCCGAGAATGGCGGCGGCGGTGGCGGCGGCGGCGGCCGCTG Direct Loss 0.949171409185425 0 0.9179416 0.9030545 prediction 0.89834281837085 Functional Loss - PSKH1 ENSG00000159792 UTR5 Human protein_coding chr16:67927192 chr16:67927192 . . 0 21 hm5C_associated_SNPs_49851 0 0 1 0 1 PSKH1 chr16:67927274 5'GT 67927274 Upstream 83bp
chr19 38817576 38817576 1 + C T LUSC 38817576 + 38817556 38817596 41 GGCCTGGGCGACTACGTGCCCGGGGAGGCCCCTGGCCAGCC GGCCTGGGCGACTACGTGCCTGGGGAGGCCCCTGGCCAGCC Direct Loss 0.949167016126465 0 0.93944466 0.9234446 prediction 0.898334032252931 Functional Loss - KCNK6 ENSG00000099337 CDS Human protein_coding chr19:38817576 chr19:38817576 synonymous SNV . 0 21 hm5C_associated_SNPs_49852 0 0 0 0 1 KCNK6 chr19:38817628 5'GT 38817628 Upstream 53bp
chr10 71025375 71025375 1 + C T UCEC 71025375 + 71025355 71025395 41 TTCTCCAGGTCAGGAGGATTCTGCAGCAGCTGGGCCTGGAC TTCTCCAGGTCAGGAGGATTTTGCAGCAGCTGGGCCTGGAC Direct Loss 0.949165250503122 0 0.79443085 0.63759804 prediction 0.898330501006243 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71025375 chr10:71025375 synonymous SNV . 0 21 hm5C_associated_SNPs_49853 0 0 0 0 1 HKDC1 chr10:71025341 3'AG 71025341 Downstream 35bp
chr16 4382387 4382387 1 + C T HNSC 4382387 + 4382367 4382407 41 GTGTGGTCCGGCCCCGTGCTCTGCACAGGGAGCTGGGCCTG GTGTGGTCCGGCCCCGTGCTTTGCACAGGGAGCTGGGCCTG Direct Loss 0.94916172569113 0 0.18637455 0.23740628 prediction 0.89832345138226 Functional Loss - GLIS2 ENSG00000126603 CDS Human protein_coding chr16:4382387 chr16:4382387 synonymous SNV . 0 21 hm5C_associated_SNPs_49854 0 0 0 0 1 GLIS2 chr16:4382453 5'GT 4382453 Upstream 67bp
chr16 68373281 68373281 1 + C T STAD 68373281 + 68373261 68373301 41 TATGCACAGCTGGTGGAGTCCGGGAGGATGTGGTCGTGGAA TATGCACAGCTGGTGGAGTCTGGGAGGATGTGGTCGTGGAA Direct Loss 0.949159253222895 0 0.89039314 0.82281697 prediction 0.898318506445791 Functional Loss - PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68373281 chr16:68373281 synonymous SNV . 0 21 hm5C_associated_SNPs_49855 0 0 1 0 1 PRMT7 chr16:68373225 3'AG 68373225 Downstream 57bp
chr16 89644100 89644100 1 + C A UCEC 89644100 + 89644080 89644120 41 GCTGTCAGGAGGACGATTTCCTGGGGGGCATGGAGTGCACC GCTGTCAGGAGGACGATTTCATGGGGGGCATGGAGTGCACC Direct Loss 0.949156463827484 0 0.91347563 0.9096544 prediction 0.898312927654968 Functional Loss - CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89644100 chr16:89644100 nonsynonymous SNV 0.970 4 21 hm5C_associated_SNPs_49856 0 0 1 0 1 CPNE7 chr16:89644129 5'GT 89644129 Upstream 30bp
chr17 694851 694851 1 + C A UCEC 694851 + 694831 694871 41 GGATGCCCATTATCAATAATCTGGAATGGGAAACCGTGCCC GGATGCCCATTATCAATAATATGGAATGGGAAACCGTGCCC Direct Loss 0.949144488305815 0 0.17410067 0.090299726 prediction 0.898288976611629 Functional Loss - MRM3 ENSG00000171861 CDS Human protein_coding chr17:694851 chr17:694851 nonsynonymous SNV 0.939 2 21 hm5C_associated_SNPs_49858 0 0 0 0 1 MRM3 chr17:694774 3'AG 694774 Downstream 78bp
chr3 184086034 184086034 1 + C T ESCA 184086034 + 184086014 184086054 41 GCCAACAACCTGCATGGATTCGAGGTGGACTCCAGAGTTTA GCCAACAACCTGCATGGATTTGAGGTGGACTCCAGAGTTTA Direct Loss 0.94913636436964 0 0.9130746 0.89153814 prediction 0.89827272873928 Functional Loss - POLR2H ENSG00000163882 CDS Human protein_coding chr3:184086034 chr3:184086034 stopgain 0.997 0 21 hm5C_associated_SNPs_49859 0 0 1 1 1 POLR2H chr3:184085965 3'AG 184085965 Downstream 70bp
chr2 70485313 70485313 1 + C T COAD 70485313 + 70485293 70485333 41 GGCCATGGGGCGCGTCGTCGCGGAGCTCGTCTCCTCGCTGC GGCCATGGGGCGCGTCGTCGTGGAGCTCGTCTCCTCGCTGC Direct Loss 0.949128732293799 0 0.907296 0.8708317 prediction 0.898257464587597 Functional Loss - PCYOX1 ENSG00000116005 CDS Human protein_coding chr2:70485313 chr2:70485313 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_49860 0 0 1 0 1 PCYOX1 chr2:70485408 5'GT 70485408 Upstream 96bp
chr6 52053889 52053889 1 + C A UCEC 52053889 + 52053869 52053909 41 GAGAGATATCCCTCTGTGATCTGGGAGGCAAAGTGCCGCCA GAGAGATATCCCTCTGTGATATGGGAGGCAAAGTGCCGCCA Direct Loss 0.949128695132345 0 0.9075109 0.7254818 prediction 0.89825739026469 Functional Loss - IL17A ENSG00000112115 CDS Human protein_coding chr6:52053889 chr6:52053889 synonymous SNV . 0 21 hm5C_associated_SNPs_49861 0 0 0 0 1 IL17A chr6:52053853 3'AG 52053853 Downstream 37bp
chr2 44079585 44079585 1 + C T LAML 44079585 + 44079565 44079605 41 GGGTTGTCGGGGGGTGAGCGCAGGAGAGTCAGCATTGGGGT GGGTTGTCGGGGGGTGAGCGTAGGAGAGTCAGCATTGGGGT Direct Loss 0.949127271837 0 0.91775876 0.91540635 prediction 0.898254543674 Functional Loss - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44079585 chr2:44079585 synonymous SNV . 0 21 hm5C_associated_SNPs_49862 0 0 1 0 2 ABCG8 chr2:44079493 3'AG 44079493 Downstream 93bp
chr2 44079585 44079585 1 + C T LAML 44079585 + 44079565 44079605 41 GGGTTGTCGGGGGGTGAGCGCAGGAGAGTCAGCATTGGGGT GGGTTGTCGGGGGGTGAGCGTAGGAGAGTCAGCATTGGGGT Direct Loss 0.949127271837 0 0.91775876 0.91540635 prediction 0.898254543674 Functional Loss - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44079585 chr2:44079585 synonymous SNV . 0 21 hm5C_associated_SNPs_49862 0 0 1 0 2 ABCG8 chr2:44079625 5'GT 44079625 Upstream 41bp
chr2 9572738 9572738 1 + C T STAD 9572738 + 9572718 9572758 41 TCATGAAGTTAAGGAAGTTGCGGGAATCAAGTTTTGGTGTT TCATGAAGTTAAGGAAGTTGTGGGAATCAAGTTTTGGTGTT Direct Loss 0.94909350776231 0 0.85526687 0.35200763 prediction 0.89818701552462 Functional Loss - CPSF3 ENSG00000119203 CDS Human protein_coding chr2:9572738 chr2:9572738 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_49865 0 0 1 0 2 CPSF3 chr2:9572640 3'AG 9572640 Downstream 99bp
chr2 9572738 9572738 1 + C T STAD 9572738 + 9572718 9572758 41 TCATGAAGTTAAGGAAGTTGCGGGAATCAAGTTTTGGTGTT TCATGAAGTTAAGGAAGTTGTGGGAATCAAGTTTTGGTGTT Direct Loss 0.94909350776231 0 0.85526687 0.35200763 prediction 0.89818701552462 Functional Loss - CPSF3 ENSG00000119203 CDS Human protein_coding chr2:9572738 chr2:9572738 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_49865 0 0 1 0 2 CPSF3 chr2:9572817 5'GT 9572817 Upstream 80bp
chr20 57876486 57876486 1 + C G BLCA 57876486 + 57876466 57876506 41 ATTCGTGCCTTGCTCCCAGTCTGGGGATGCTGGCAGGCGCG ATTCGTGCCTTGCTCCCAGTGTGGGGATGCTGGCAGGCGCG Direct Loss 0.949068844617644 0 0.7306457 0.44418645 prediction 0.898137689235287 Functional Loss - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57876486 chr20:57876486 nonsynonymous SNV 0.903 2 21 hm5C_associated_SNPs_49869 0 0 0 0 1 EDN3 chr20:57876465 3'AG 57876465 Downstream 22bp
chr1 158813842 158813842 1 + C A LUAD 158813842 + 158813822 158813862 41 TCCCTCAGGAGCCAGCACATCTGCAGCTGTGGATCATCCCC TCCCTCAGGAGCCAGCACATATGCAGCTGTGGATCATCCCC Direct Loss 0.94897935202356 0 0.33849877 0.25784242 prediction 0.89795870404712 Functional Loss - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813842 chr1:158813842 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_49878 0 0 0 0 2 MNDA chr1:158813745 3'AG 158813745 Downstream 98bp
chr1 158813842 158813842 1 + C A LUAD 158813842 + 158813822 158813862 41 TCCCTCAGGAGCCAGCACATCTGCAGCTGTGGATCATCCCC TCCCTCAGGAGCCAGCACATATGCAGCTGTGGATCATCCCC Direct Loss 0.94897935202356 0 0.33849877 0.25784242 prediction 0.89795870404712 Functional Loss - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813842 chr1:158813842 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_49878 0 0 0 0 2 MNDA chr1:158813912 5'GT 158813912 Upstream 71bp
chr11 6629665 6629665 1 + C T rs1043388 6629665 + 6629645 6629685 41 ATCAATGCAGTGAATGAACACGGGAATGTGCCCCTGCACTA ATCAATGCAGTGAATGAACATGGGAATGTGCCCCTGCACTA Direct Loss 0.948971537724867 0 0.91267157 0.8767961 prediction 0.897943075449734 Functional Loss - ILK ENSG00000166333 CDS Human protein_coding chr11:6629665 chr11:6629665 synonymous SNV . 0 21 hm5C_associated_SNPs_49880 1 0 1 0 2 ILK chr11:6629624 3'AG 6629624 Downstream 42bp
chr11 6629665 6629665 1 + C T rs1043388 6629665 + 6629645 6629685 41 ATCAATGCAGTGAATGAACACGGGAATGTGCCCCTGCACTA ATCAATGCAGTGAATGAACATGGGAATGTGCCCCTGCACTA Direct Loss 0.948971537724867 0 0.91267157 0.8767961 prediction 0.897943075449734 Functional Loss - ILK ENSG00000166333 CDS Human protein_coding chr11:6629665 chr11:6629665 synonymous SNV . 0 21 hm5C_associated_SNPs_49880 1 0 1 0 2 ILK chr11:6629719 5'GT 6629719 Upstream 55bp
chr14 24108424 24108424 1 + C G rs146690475 24108424 + 24108404 24108444 41 GCCCGACGTCTGGCCCGGGACGGGGCCCACGTGGTCATCAG GCCCGACGTCTGGCCCGGGAGGGGGCCCACGTGGTCATCAG Direct Loss 0.948969344161553 0 0.47925717 0.68783283 prediction 0.897938688323107 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24108424 chr14:24108424 nonsynonymous SNV 0.017 2 21 hm5C_associated_SNPs_49881 0 0 1 0 1 DHRS2 chr14:24108388 3'AG 24108388 Downstream 37bp
chr11 34144097 34144097 1 + C T LUSC 34144097 + 34144077 34144117 41 TGCTCGAGGACGGGGAAAATCTGCAGCCCTGGGATTGGCGA TGCTCGAGGACGGGGAAAATTTGCAGCCCTGGGATTGGCGA Direct Loss 0.948957745516485 0 0.48639497 0.59368736 prediction 0.897915491032971 Functional Loss - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34144097 chr11:34144097 nonsynonymous SNV 0.971 4 21 hm5C_associated_SNPs_49884 0 0 1 0 2 NAT10 chr11:34144006 3'AG 34144006 Downstream 92bp
chr11 34144097 34144097 1 + C T LUSC 34144097 + 34144077 34144117 41 TGCTCGAGGACGGGGAAAATCTGCAGCCCTGGGATTGGCGA TGCTCGAGGACGGGGAAAATTTGCAGCCCTGGGATTGGCGA Direct Loss 0.948957745516485 0 0.48639497 0.59368736 prediction 0.897915491032971 Functional Loss - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34144097 chr11:34144097 nonsynonymous SNV 0.971 4 21 hm5C_associated_SNPs_49884 0 0 1 0 2 NAT10 chr11:34144139 5'GT 34144139 Upstream 43bp
chr9 77257416 77257416 1 + C T UCEC 77257416 + 77257396 77257436 41 AGCAGCGGCTGCAGGAACAGCGGCAGCAGCAGAGTGGGGAG AGCAGCGGCTGCAGGAACAGTGGCAGCAGCAGAGTGGGGAG Direct Loss 0.94895336376144 0 0.78513134 0.5513293 prediction 0.89790672752288 Functional Loss - RORB ENSG00000198963 CDS Human protein_coding chr9:77257416 chr9:77257416 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_49885 0 0 0 0 1 RORB chr9:77257330 3'AG 77257330 Downstream 87bp
chr4 187113099 187113099 1 + C T rs574516881 187113099 + 187113079 187113119 41 GCAGAGGGTGGCGAGCTACGCGCGGAAATGGCAGCAGATGC GCAGAGGGTGGCGAGCTACGTGCGGAAATGGCAGCAGATGC Direct Loss 0.948948443483517 0 0.53178066 0.40981615 prediction 0.897896886967034 Functional Loss - CYP4V2 ENSG00000145476 CDS Human protein_coding chr4:187113099 chr4:187113099 nonsynonymous SNV 0.017 0 21 hm5C_associated_SNPs_49886 0 0 1 0 1 CYP4V2 chr4:187113191 5'GT 187113191 Upstream 93bp
chr7 1026794 1026794 1 + C A LIHC 1026794 + 1026774 1026814 41 CCAACGCGGTGGCCTGCACCCTGGACATGGTCATGGCCGGG CCAACGCGGTGGCCTGCACCATGGACATGGTCATGGCCGGG Direct Loss 0.948938581911161 0 0.32931858 0.35781604 prediction 0.897877163822321 Functional Loss - CYP2W1 ENSG00000073067 CDS Human protein_coding chr7:1026794 chr7:1026794 nonsynonymous SNV 0.695 0 21 hm5C_associated_SNPs_49888 0 0 1 0 1 CYP2W1 chr7:1026743 3'AG 1026743 Downstream 52bp
chr1 1334993 1334993 1 + C A rs185071634 1334993 + 1334973 1335013 41 GCCTGCCTGTGCGCCCCGAGCGGGGCTGGGACTCTTCCAAG GCCTGCCTGTGCGCCCCGAGAGGGGCTGGGACTCTTCCAAG Direct Loss 0.948937325177245 0 0.941604 0.90052444 prediction 0.897874650354489 Functional Loss - LOC148413 ENSG00000224870 CDS Human processed_transcript chr1:1334993 chr1:1334993 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_49889 0 0 1 0 1 LOC148413 chr1:1335069 5'GT 1335069 Upstream 77bp
chr19 44564692 44564692 1 + C T UCEC 44564692 + 44564672 44564712 41 TTGCCCAGAGGAAGCTGTATCGAGATGTGATGCTGGAGAAC TTGCCCAGAGGAAGCTGTATTGAGATGTGATGCTGGAGAAC Direct Loss 0.948926845287328 0 0.9236363 0.895978 prediction 0.897853690574656 Functional Loss - ZNF223 ENSG00000178386;ENSG00000267022 CDS Human other chr19:44564692 chr19:44564692 stopgain 0.565 0 21 hm5C_associated_SNPs_49891 0 0 0 0 2 ZNF223 chr19:44564608 3'AG 44564608 Downstream 85bp
chr19 44564692 44564692 1 + C T UCEC 44564692 + 44564672 44564712 41 TTGCCCAGAGGAAGCTGTATCGAGATGTGATGCTGGAGAAC TTGCCCAGAGGAAGCTGTATTGAGATGTGATGCTGGAGAAC Direct Loss 0.948926845287328 0 0.9236363 0.895978 prediction 0.897853690574656 Functional Loss - ZNF223 ENSG00000178386;ENSG00000267022 CDS Human other chr19:44564692 chr19:44564692 stopgain 0.565 0 21 hm5C_associated_SNPs_49891 0 0 0 0 2 ZNF223 chr19:44564734 5'GT 44564734 Upstream 43bp
chr10 86012696 86012696 1 + C A UCEC 86012696 + 86012676 86012716 41 TCTGGGCAGCTCTGCCCCTTCTGGGTTGGGGTCACTACGAC TCTGGGCAGCTCTGCCCCTTATGGGTTGGGGTCACTACGAC Direct Loss 0.948882253004712 0 0.7870755 0.6687325 prediction 0.897764506009423 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86012696 chr10:86012696 nonsynonymous SNV 0.809 0 21 hm5C_associated_SNPs_49896 0 0 0 0 2 RGR chr10:86012613 3'AG 86012613 Downstream 84bp
chr10 86012696 86012696 1 + C A UCEC 86012696 + 86012676 86012716 41 TCTGGGCAGCTCTGCCCCTTCTGGGTTGGGGTCACTACGAC TCTGGGCAGCTCTGCCCCTTATGGGTTGGGGTCACTACGAC Direct Loss 0.948882253004712 0 0.7870755 0.6687325 prediction 0.897764506009423 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86012696 chr10:86012696 nonsynonymous SNV 0.809 0 21 hm5C_associated_SNPs_49896 0 0 0 0 2 RGR chr10:86012766 5'GT 86012766 Upstream 71bp
chr17 7345991 7345991 1 + C T rs4151131 7345991 + 7345971 7346011 41 TGTACGCCTCTGCTCTCTACCGCCAGCGTCGTTCTGGCCGG TGTACGCCTCTGCTCTCTACTGCCAGCGTCGTTCTGGCCGG Direct Loss 0.948880517138416 0 0.8590565 0.23974559 prediction 0.897761034276831 Functional Loss - FGF11 ENSG00000161958 CDS Human protein_coding chr17:7345991 chr17:7345991 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_49898 0 0 0 0 1 FGF11 chr17:7345913 3'AG 7345913 Downstream 79bp
chr17 21825524 21825524 1 + C A rs184672012 21825524 + 21825504 21825544 41 ACGAAACCACAGGCAGAGTCCGGGGAAGCAGCGCGGCATCC ACGAAACCACAGGCAGAGTCAGGGGAAGCAGCGCGGCATCC Direct Loss 0.948878027040627 0 0.89446944 0.90018094 prediction 0.897756054081253 Functional Loss - FAM27E5 ENSG00000178130 ncRNA_exonic Human lincRNA chr17:21825524 chr17:21825524 . . 0 21 hm5C_associated_SNPs_49900 0 0 0 0 1 FAM27E5 chr17:21825574 5'GT 21825574 Upstream 51bp
chr1 153615768 153615768 1 + C T UCEC 153615768 + 153615748 153615788 41 GCTTAAGAAGAGGTGGTGTTCGAGGTCGTGGAGGTCCTGGG GCTTAAGAAGAGGTGGTGTTTGAGGTCGTGGAGGTCCTGGG Direct Loss 0.948871802428179 0 0.9098536 0.8781753 prediction 0.897743604856359 Functional Loss - CHTOP ENSG00000160679 CDS Human protein_coding chr1:153615768 chr1:153615768 stopgain 1.000 1 21 hm5C_associated_SNPs_49902 0 0 1 0 2 CHTOP chr1:153615703 3'AG 153615703 Downstream 66bp
chr1 153615768 153615768 1 + C T UCEC 153615768 + 153615748 153615788 41 GCTTAAGAAGAGGTGGTGTTCGAGGTCGTGGAGGTCCTGGG GCTTAAGAAGAGGTGGTGTTTGAGGTCGTGGAGGTCCTGGG Direct Loss 0.948871802428179 0 0.9098536 0.8781753 prediction 0.897743604856359 Functional Loss - CHTOP ENSG00000160679 CDS Human protein_coding chr1:153615768 chr1:153615768 stopgain 1.000 1 21 hm5C_associated_SNPs_49902 0 0 1 0 2 CHTOP chr1:153615840 5'GT 153615840 Upstream 73bp
chr1 205210708 205210708 1 + C T COAD 205210708 + 205210688 205210728 41 TCCACAGCCGCCGTCGGTCTCGGGAAAGGGAGCACCAGACG TCCACAGCCGCCGTCGGTCTTGGGAAAGGGAGCACCAGACG Direct Loss 0.948857062116185 0 0.9389821 0.9065722 prediction 0.89771412423237 Functional Loss - TMCC2 ENSG00000133069 CDS Human protein_coding chr1:205210708 chr1:205210708 nonsynonymous SNV 0.983 2 21 hm5C_associated_SNPs_49903 0 0 1 0 1 TMCC2 chr1:205210633 3'AG 205210633 Downstream 76bp
chr12 93772186 93772186 1 + C T UCEC 93772186 + 93772166 93772206 41 GCCTGTGCTTCCGGAGCGAGCAGGAGGACGAGGTAGGGCGC GCCTGTGCTTCCGGAGCGAGTAGGAGGACGAGGTAGGGCGC Direct Loss 0.94883318017026 0 0.93655246 0.9154719 prediction 0.89766636034052 Functional Loss - NUDT4 ENSG00000173598 CDS Human protein_coding chr12:93772186 chr12:93772186 stopgain 0.972 1 21 hm5C_associated_SNPs_49906 0 0 1 0 1 NUDT4 chr12:93772197 5'GT 93772197 Upstream 12bp
chr12 52700020 52700020 1 + C T PRAD 52700020 + 52700000 52700040 41 TCCAAGCTGGGCCTGGACATCGAGATCGCCACCTACAGGCG TCCAAGCTGGGCCTGGACATTGAGATCGCCACCTACAGGCG Direct Loss 0.948819245012817 0 0.86143684 0.7838626 prediction 0.897638490025633 Functional Loss - KRT86 ENSG00000170442 CDS Human protein_coding chr12:52700020 chr12:52700020 synonymous SNV . 0 21 hm5C_associated_SNPs_49907 0 0 0 0 1 KRT86 chr12:52700064 5'GT 52700064 Upstream 45bp
chr3 32927537 32927537 1 + C T UCEC 32927537 + 32927517 32927557 41 ATAAGAAAGCCCTGGAGGAACGCGAGTGTGAGCTGCTGTGG ATAAGAAAGCCCTGGAGGAATGCGAGTGTGAGCTGCTGTGG Direct Loss 0.948806019065522 0 0.39723027 0.4241349 prediction 0.897612038131044 Functional Loss - TRIM71 ENSG00000206557 CDS Human protein_coding chr3:32927537 chr3:32927537 nonsynonymous SNV 0.914 5 21 hm5C_associated_SNPs_49909 0 0 1 0 1 TRIM71 chr3:32927560 5'GT 32927560 Upstream 24bp
chr2 241808766 241808766 1 + C T PAAD 241808766 + 241808746 241808786 41 GGGCAGCGAGCCGTGGACATCGGGGAGCGCATAGGTAAGGG GGGCAGCGAGCCGTGGACATTGGGGAGCGCATAGGTAAGGG Direct Loss 0.948805454307986 0 0.8948411 0.86968744 prediction 0.897610908615972 Functional Loss - AGXT ENSG00000172482 CDS Human protein_coding chr2:241808766 chr2:241808766 synonymous SNV . 0 21 hm5C_associated_SNPs_49911 0 0 1 0 1 AGXT chr2:241808779 5'GT 241808779 Upstream 14bp
chrX 153416342 153416342 1 + C G CESC 153416342 + 153416322 153416362 41 ACCGTCATCGCCAGCACTATCAGCATTGTGAACCAGGTCTC ACCGTCATCGCCAGCACTATGAGCATTGTGAACCAGGTCTC Direct Loss 0.948784349180039 0 0.8520894 0.42878306 prediction 0.897568698360078 Functional Loss - OPN1LW ENSG00000102076 CDS Human protein_coding chrX:153416342 chrX:153416342 nonsynonymous SNV 0.840 4 21 hm5C_associated_SNPs_49915 0 0 0 0 1 OPN1LW chrX:153416424 5'GT 153416424 Upstream 83bp
chr19 35769888 35769888 1 + C T UCEC 35769888 + 35769868 35769908 41 CCAAGGCCTGCGATTACATCCGGGAGTTGCGCCAGACCAAC CCAAGGCCTGCGATTACATCTGGGAGTTGCGCCAGACCAAC Direct Loss 0.948767804390238 0 0.8992215 0.42365217 prediction 0.897535608780476 Functional Loss - USF2 ENSG00000105698 CDS Human protein_coding chr19:35769888 chr19:35769888 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_49919 0 0 1 0 2 USF2 chr19:35769873 3'AG 35769873 Downstream 16bp
chr19 35769888 35769888 1 + C T UCEC 35769888 + 35769868 35769908 41 CCAAGGCCTGCGATTACATCCGGGAGTTGCGCCAGACCAAC CCAAGGCCTGCGATTACATCTGGGAGTTGCGCCAGACCAAC Direct Loss 0.948767804390238 0 0.8992215 0.42365217 prediction 0.897535608780476 Functional Loss - USF2 ENSG00000105698 CDS Human protein_coding chr19:35769888 chr19:35769888 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_49919 0 0 1 0 2 USF2 chr19:35769977 5'GT 35769977 Upstream 90bp
chr3 99513173 99513173 1 + C A COAD 99513173 + 99513153 99513193 41 TTTGCCAGGTCATGGGATACCTGGAATTAAAGGAAAACCAG TTTGCCAGGTCATGGGATACATGGAATTAAAGGAAAACCAG Direct Loss 0.948729029946452 0 0.50402904 0.5290057 prediction 0.897458059892903 Functional Loss - COL8A1 ENSG00000144810 CDS Human protein_coding chr3:99513173 chr3:99513173 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_49923 0 0 0 0 1 COL8A1 chr3:99513074 3'AG 99513074 Downstream 100bp
chrX 585258 585258 1 + C A rs113313554 585258 + 585238 585278 41 CCGAGTCCGCACAGGGTTTGCGGGAGGTGGTGACCGCGCTG CCGAGTCCGCACAGGGTTTGAGGGAGGTGGTGACCGCGCTG Direct Loss 0.948698328563921 0 0.9102515 0.90547335 prediction 0.897396657127843 Functional Loss - SHOX ENSG00000185960 UTR5 Human protein_coding chrX:585258 chrX:585258 . . 0 21 hm5C_associated_SNPs_49929 1 0 0 0 1 SHOX chrX:585337 5'GT 585337 Upstream 80bp
chr16 31230742 31230742 1 + C G BLCA 31230742 + 31230722 31230762 41 AGGCAGGGGTCGCCTTGCGCCGGGAGCTGGGGAGCCTGAAC AGGCAGGGGTCGCCTTGCGCGGGGAGCTGGGGAGCCTGAAC Direct Loss 0.9486857343485 0 0.90655774 0.9189539 prediction 0.897371468697 Functional Loss - TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31230742 chr16:31230742 nonsynonymous SNV 0.337 0 21 hm5C_associated_SNPs_49930 0 0 0 0 1 TRIM72 chr16:31230840 5'GT 31230840 Upstream 99bp
chr1 156703283 156703283 1 + C G LUAD 156703283 + 156703263 156703303 41 ACCAGGAGCTTCTGCAGGCTCTGGAGAAAGAGGAGAAGAGG ACCAGGAGCTTCTGCAGGCTGTGGAGAAAGAGGAGAAGAGG Direct Loss 0.948651320705179 0 0.71767116 0.6307344 prediction 0.897302641410357 Functional Loss - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156703283 chr1:156703283 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_49935 0 0 1 0 1 RRNAD1 chr1:156703312 5'GT 156703312 Upstream 30bp
chr8 86354340 86354340 1 + C T COAD 86354340 + 86354320 86354360 41 TCCCTGGACCCTACCGACTTCGCCAGTTTCATCTTCACTGG TCCCTGGACCCTACCGACTTTGCCAGTTTCATCTTCACTGG Direct Loss 0.948640313581265 0 0.066521645 0.10446912 prediction 0.89728062716253 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86354340 chr8:86354340 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_49937 0 0 0 0 3 CA3 chr8:86354302 3'AG 86354302 Downstream 39bp
chr8 86354340 86354340 1 + C T COAD 86354340 + 86354320 86354360 41 TCCCTGGACCCTACCGACTTCGCCAGTTTCATCTTCACTGG TCCCTGGACCCTACCGACTTTGCCAGTTTCATCTTCACTGG Direct Loss 0.948640313581265 0 0.066521645 0.10446912 prediction 0.89728062716253 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86354340 chr8:86354340 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_49937 0 0 0 0 3 CA3 chr8:86354344 5'GT 86354344 Upstream 5bp
chr8 86354340 86354340 1 + C T COAD 86354340 + 86354320 86354360 41 TCCCTGGACCCTACCGACTTCGCCAGTTTCATCTTCACTGG TCCCTGGACCCTACCGACTTTGCCAGTTTCATCTTCACTGG Direct Loss 0.948640313581265 0 0.066521645 0.10446912 prediction 0.89728062716253 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86354340 chr8:86354340 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_49937 0 0 0 0 3 CA3 chr8:86354420 5'GT 86354420 Upstream 81bp
chr7 48147076 48147076 1 + C T rs75887102 48147076 + 48147056 48147096 41 ATGGAGTCCTCGGTGTTTGCCGCCATGTGCAGCGCCTGCGG ATGGAGTCCTCGGTGTTTGCTGCCATGTGCAGCGCCTGCGG Direct Loss 0.948637683209812 0 0.81884444 0.26012093 prediction 0.897275366419624 Functional Loss - UPP1 ENSG00000183696 CDS Human protein_coding chr7:48147076 chr7:48147076 synonymous SNV . 0 21 hm5C_associated_SNPs_49938 0 0 1 0 1 UPP1 chr7:48147104 5'GT 48147104 Upstream 29bp
chr22 38211679 38211679 1 + C A HNSC 38211679 + 38211659 38211699 41 CTTCTTCTCAGGGGGCTACACGACAGGGCCTGGGCCCCTGG CTTCTTCTCAGGGGGCTACAAGACAGGGCCTGGGCCCCTGG Direct Loss 0.948631880055966 0 0.2165058 0.26578522 prediction 0.897263760111932 Functional Loss - GCAT ENSG00000100116 CDS Human protein_coding chr22:38211679 chr22:38211679 nonsynonymous SNV 0.907 5 21 hm5C_associated_SNPs_49939 0 0 0 0 1 GCAT chr22:38211670 3'AG 38211670 Downstream 10bp
chr3 35770825 35770825 1 + C T OV 35770825 + 35770805 35770845 41 TTCCAGCAGTGCAGGCTCCTCAGGATCGCTGTCCCGCACCC TTCCAGCAGTGCAGGCTCCTTAGGATCGCTGTCCCGCACCC Direct Loss 0.948617888075427 0 0.84455633 0.3587231 prediction 0.897235776150855 Functional Loss - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35770825 chr3:35770825 nonsynonymous SNV 0.986 4 21 hm5C_associated_SNPs_49940 0 0 0 0 1 ARPP21 chr3:35770795 3'AG 35770795 Downstream 31bp
chr17 45297350 45297350 1 + C T GBM 45297350 + 45297330 45297370 41 ACGGCCAGTGCGGGGATGTACTGCGGGCCCTGGGCCAGAAC ACGGCCAGTGCGGGGATGTATTGCGGGCCCTGGGCCAGAAC Direct Loss 0.948588910281515 0 0.46845698 0.8837342 prediction 0.897177820563029 Functional Loss - MYL4 ENSG00000198336 CDS Human protein_coding chr17:45297350 chr17:45297350 synonymous SNV . 0 21 hm5C_associated_SNPs_49942 0 0 1 0 1 MYL4 chr17:45297419 5'GT 45297419 Upstream 70bp
chr11 76804839 76804839 1 + C T SKCM 76804839 + 76804819 76804859 41 CCTGCTCGTCACTTGCCTCCCGGGAGTCGCTGTGGCAAAAG CCTGCTCGTCACTTGCCTCCTGGGAGTCGCTGTGGCAAAAG Direct Loss 0.948577092175471 0 0.90972453 0.88864666 prediction 0.897154184350942 Functional Loss - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76804839 chr11:76804839 nonsynonymous SNV 0.961 5 21 hm5C_associated_SNPs_49943 0 0 0 0 1 CAPN5 chr11:76804859 5'GT 76804859 Upstream 21bp
chr1 155154415 155154415 1 + C T SKCM 155154415 + 155154395 155154435 41 GCGAGCAGTACGGAGTGTTCCAGGGCTGCCCCTGCTGCTGG GCGAGCAGTACGGAGTGTTCTAGGGCTGCCCCTGCTGCTGG Direct Loss 0.948548606601024 0 0.9170717 0.8573977 prediction 0.897097213202048 Functional Loss - TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155154415 chr1:155154415 nonsynonymous SNV 0.952 1 21 hm5C_associated_SNPs_49944 0 0 0 0 1 TRIM46 chr1:155154328 3'AG 155154328 Downstream 88bp
chr2 10282395 10282395 1 + C T rs141974256 10282395 + 10282375 10282415 41 TTCTAAGGGGATGAGAAGCTCGGGAAGGTCTGACCAGCCTT TTCTAAGGGGATGAGAAGCTTGGGAAGGTCTGACCAGCCTT Direct Loss 0.948543131603036 0 0.8823944 0.82530665 prediction 0.897086263206073 Functional Loss - C2orf48 ENSG00000163009 CDS Human lincRNA chr2:10282395 chr2:10282395 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_49946 0 0 1 0 1 C2orf48 chr2:10282382 3'AG 10282382 Downstream 14bp
chrX 154255273 154255273 1 + C A SKCM 154255273 + 154255253 154255293 41 GCGACAACTGCGCGCCACTCCGCGGCCTACCGCGCAGATCC GCGACAACTGCGCGCCACTCAGCGGCCTACCGCGCAGATCC Direct Loss 0.948525363175425 0 0.91425 0.9313143 prediction 0.897050726350851 Functional Loss - FUNDC2 ENSG00000165775 CDS Human protein_coding chrX:154255273 chrX:154255273 synonymous SNV . 0 21 hm5C_associated_SNPs_49948 0 0 0 0 1 FUNDC2 chrX:154255346 5'GT 154255346 Upstream 74bp
chr12 4705362 4705362 1 + C T SKCM 4705362 + 4705342 4705382 41 TATGAAGTTCTGGAGACAATCGGGAAGGGGTCCTTTGGACA TATGAAGTTCTGGAGACAATTGGGAAGGGGTCCTTTGGACA Direct Loss 0.948522735113962 0 0.91337264 0.89320725 prediction 0.897045470227925 Functional Loss - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4705362 chr12:4705362 synonymous SNV . 0 21 hm5C_associated_SNPs_49949 0 0 0 0 2 DYRK4 chr12:4705315 3'AG 4705315 Downstream 48bp
chr12 4705362 4705362 1 + C T SKCM 4705362 + 4705342 4705382 41 TATGAAGTTCTGGAGACAATCGGGAAGGGGTCCTTTGGACA TATGAAGTTCTGGAGACAATTGGGAAGGGGTCCTTTGGACA Direct Loss 0.948522735113962 0 0.91337264 0.89320725 prediction 0.897045470227925 Functional Loss - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4705362 chr12:4705362 synonymous SNV . 0 21 hm5C_associated_SNPs_49949 0 0 0 0 2 DYRK4 chr12:4705451 5'GT 4705451 Upstream 90bp
chr19 58721386 58721386 1 + C T UCEC 58721386 + 58721366 58721406 41 GCCTCGAGGTCACTGCCCAGCAGGAGGAGAAGCAGGAGGAT GCCTCGAGGTCACTGCCCAGTAGGAGGAGAAGCAGGAGGAT Direct Loss 0.948511920371098 0 0.80942845 0.5551674 prediction 0.897023840742195 Functional Loss - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58721386 chr19:58721386 stopgain 0.002 0 21 hm5C_associated_SNPs_49950 0 0 1 0 2 ZNF274 chr19:58721327 3'AG 58721327 Downstream 60bp
chr19 58721386 58721386 1 + C T UCEC 58721386 + 58721366 58721406 41 GCCTCGAGGTCACTGCCCAGCAGGAGGAGAAGCAGGAGGAT GCCTCGAGGTCACTGCCCAGTAGGAGGAGAAGCAGGAGGAT Direct Loss 0.948511920371098 0 0.80942845 0.5551674 prediction 0.897023840742195 Functional Loss - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58721386 chr19:58721386 stopgain 0.002 0 21 hm5C_associated_SNPs_49950 0 0 1 0 2 ZNF274 chr19:58721439 5'GT 58721439 Upstream 54bp
chr19 3533330 3533330 1 + C A KIRC 3533330 + 3533310 3533350 41 TCACAGAACCAGATCCTTGTCTGGAAGTACCCCTCCCTGAC TCACAGAACCAGATCCTTGTATGGAAGTACCCCTCCCTGAC Direct Loss 0.948506243240606 0 0.5501963 0.58295596 prediction 0.897012486481213 Functional Loss - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3533330 chr19:3533330 synonymous SNV . 0 21 hm5C_associated_SNPs_49951 0 0 1 0 2 FZR1 chr19:3533292 3'AG 3533292 Downstream 39bp
chr19 3533330 3533330 1 + C A KIRC 3533330 + 3533310 3533350 41 TCACAGAACCAGATCCTTGTCTGGAAGTACCCCTCCCTGAC TCACAGAACCAGATCCTTGTATGGAAGTACCCCTCCCTGAC Direct Loss 0.948506243240606 0 0.5501963 0.58295596 prediction 0.897012486481213 Functional Loss - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3533330 chr19:3533330 synonymous SNV . 0 21 hm5C_associated_SNPs_49951 0 0 1 0 2 FZR1 chr19:3533396 5'GT 3533396 Upstream 67bp
chr9 92220750 92220750 1 + C T GBM 92220750 + 92220730 92220770 41 GCGGCTATCGTGGGCGCCGGCGAGGAGGCGGGTGCGCCGGG GCGGCTATCGTGGGCGCCGGTGAGGAGGCGGGTGCGCCGGG Direct Loss 0.948487366385282 0 0.92865896 0.88324916 prediction 0.896974732770564 Functional Loss - GADD45G ENSG00000130222 CDS Human protein_coding chr9:92220750 chr9:92220750 synonymous SNV . 0 21 hm5C_associated_SNPs_49954 0 0 1 0 1 GADD45G chr9:92220795 5'GT 92220795 Upstream 46bp
chr13 114287483 114287483 1 + C A COAD 114287483 + 114287463 114287503 41 GGCAAGGGCCTACGGCATTTCTCCATGAAGGTCTGCGAGAA GGCAAGGGCCTACGGCATTTATCCATGAAGGTCTGCGAGAA Direct Loss 0.9484832553266 0 0.9667064 0.87746775 prediction 0.896966510653201 Functional Loss - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114287483 chr13:114287483 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_49956 0 0 1 0 1 TFDP1 chr13:114287435 3'AG 114287435 Downstream 49bp
chr7 150020563 150020563 1 - G C rs566237395 150020563 - 150020543 150020583 41 CCGCAGAGCCGGCGCCTCCTCGGCAGGTAAGAGCCGCAGCC CCGCAGAGCCGGCGCCTCCTGGGCAGGTAAGAGCCGCAGCC Direct Loss 0.948482071301251 0 0.7108328 0.5994656 prediction 0.896964142602501 Functional Loss - ACTR3C;LRRC61 ENSG00000106526 CDS Human protein_coding chr7:150020563 chr7:150020563 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_49957 0 0 1 0 1 ACTR3C;LRRC61 chr7:150020558 5'GT 150020558 Upstream 6bp
chr19 47712512 47712512 1 + C G HNSC 47712512 + 47712492 47712532 41 GCCTTGGCCCCAAGTGAACTCAAGATTTGGCAGCCCCAGAG GCCTTGGCCCCAAGTGAACTGAAGATTTGGCAGCCCCAGAG Direct Loss 0.948451505538538 0 0.8363874 0.4271873 prediction 0.896903011077075 Functional Loss - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47712512 chr19:47712512 stopgain 0.000 0 21 hm5C_associated_SNPs_49960 0 0 1 2 1 SAE1 chr19:47712416 3'AG 47712416 Downstream 97bp
chr17 4804455 4804455 1 - G T LUAD 4804455 - 4804435 4804475 41 GTGGGCCATCGACTTCTGCCCGGGGGTGATCCGCCGCCACC GTGGGCCATCGACTTCTGCCAGGGGGTGATCCGCCGCCACC Direct Loss 0.948420855778528 0 0.94042176 0.93333876 prediction 0.896841711557056 Functional Loss - CHRNE ENSG00000108556 CDS Human protein_coding chr17:4804455 chr17:4804455 nonsynonymous SNV 0.492 3 21 hm5C_associated_SNPs_49963 0 0 0 0 1 CHRNE chr17:4804485 3'AG 4804485 Downstream 31bp
chr2 55277253 55277253 1 + C G rs190624391 55277253 + 55277233 55277273 41 CACTGGGGCCGCGGACAGCCCGGCGGCGGGCTTCCTCTCCA CACTGGGGCCGCGGACAGCCGGGCGGCGGGCTTCCTCTCCA Direct Loss 0.948418265257164 0 0.90308845 0.91871965 prediction 0.896836530514329 Functional Loss - RTN4 ENSG00000115310 CDS Human protein_coding chr2:55277253 chr2:55277253 nonsynonymous SNV 0.920 1 21 hm5C_associated_SNPs_49964 0 0 0 0 1 RTN4 chr2:55277337 5'GT 55277337 Upstream 85bp
chr1 173802613 173802613 1 + C T UCEC 173802613 + 173802593 173802633 41 CCCAGATGGTCATGAAAATGCGGGAATATCTCTGTAATCTG CCCAGATGGTCATGAAAATGTGGGAATATCTCTGTAATCTG Direct Loss 0.94841392762039 0 0.32432643 0.191852 prediction 0.89682785524078 Functional Loss - DARS2 ENSG00000117593 CDS Human protein_coding chr1:173802613 chr1:173802613 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_49967 0 0 1 0 2 DARS2 chr1:173802514 3'AG 173802514 Downstream 100bp
chr1 173802613 173802613 1 + C T UCEC 173802613 + 173802593 173802633 41 CCCAGATGGTCATGAAAATGCGGGAATATCTCTGTAATCTG CCCAGATGGTCATGAAAATGTGGGAATATCTCTGTAATCTG Direct Loss 0.94841392762039 0 0.32432643 0.191852 prediction 0.89682785524078 Functional Loss - DARS2 ENSG00000117593 CDS Human protein_coding chr1:173802613 chr1:173802613 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_49967 0 0 1 0 2 DARS2 chr1:173802637 5'GT 173802637 Upstream 25bp
chr5 133450789 133450789 1 + C T rs187491297 133450789 + 133450769 133450809 41 GAGTCCGAGGGCGCGGCCGGCGGCGCAGGGATCCCGGGGGT GAGTCCGAGGGCGCGGCCGGTGGCGCAGGGATCCCGGGGGT Direct Loss 0.948373830387708 0 0.9214123 0.9053496 prediction 0.896747660775416 Functional Loss - TCF7 ENSG00000081059 CDS Human protein_coding chr5:133450789 chr5:133450789 synonymous SNV . 0 21 hm5C_associated_SNPs_49969 0 0 0 0 1 TCF7 chr5:133450846 5'GT 133450846 Upstream 58bp
chrX 151908813 151908813 1 + C T COAD 151908813 + 151908793 151908833 41 TCACTGTCCTGGGGGAAGCTCGGGGAGACCAGGTGGACTGG TCACTGTCCTGGGGGAAGCTTGGGGAGACCAGGTGGACTGG Direct Loss 0.948371523412852 0 0.9462999 0.9284361 prediction 0.896743046825704 Functional Loss - CSAG1 ENSG00000198930 CDS Human protein_coding chrX:151908813 chrX:151908813 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_49971 0 0 1 0 2 CSAG1 chrX:151908771 3'AG 151908771 Downstream 43bp
chrX 151908813 151908813 1 + C T COAD 151908813 + 151908793 151908833 41 TCACTGTCCTGGGGGAAGCTCGGGGAGACCAGGTGGACTGG TCACTGTCCTGGGGGAAGCTTGGGGAGACCAGGTGGACTGG Direct Loss 0.948371523412852 0 0.9462999 0.9284361 prediction 0.896743046825704 Functional Loss - CSAG1 ENSG00000198930 CDS Human protein_coding chrX:151908813 chrX:151908813 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_49971 0 0 1 0 2 CSAG1 chrX:151908778 3'AG 151908778 Downstream 36bp
chr16 12061496 12061496 1 + C T rs561432842 12061496 + 12061476 12061516 41 TGGTGATGAAATTATTCTTCCGAGAGGCCTCGAGTACACGG TGGTGATGAAATTATTCTTCTGAGAGGCCTCGAGTACACGG Direct Loss 0.94836046790567 0 0.83122164 0.76880455 prediction 0.89672093581134 Functional Loss - TNFRSF17 ENSG00000048462 CDS Human protein_coding chr16:12061496 chr16:12061496 nonsynonymous SNV 0.003 2 21 hm5C_associated_SNPs_49973 0 0 0 0 1 TNFRSF17 chr16:12061427 3'AG 12061427 Downstream 70bp
chr16 72057479 72057479 1 + C T UCEC 72057479 + 72057459 72057499 41 CTGTACACGGCCCTCACCTTCTGGGGGCCACCCGTTGTGGG CTGTACACGGCCCTCACCTTTTGGGGGCCACCCGTTGTGGG Direct Loss 0.94834530706201 0 0.91781974 0.9363805 prediction 0.896690614124021 Functional Loss - DHODH ENSG00000102967 CDS Human protein_coding chr16:72057479 chr16:72057479 synonymous SNV . 0 21 hm5C_associated_SNPs_49974 0 0 0 0 1 DHODH chr16:72057532 5'GT 72057532 Upstream 54bp
chr19 36207421 36207421 1 + C A SKCM 36207421 + 36207401 36207441 41 GCCTTTGTCCTCAGCGCTCCCGGGACTTCTCGGCCATGACC GCCTTTGTCCTCAGCGCTCCAGGGACTTCTCGGCCATGACC Direct Loss 0.948334136352912 0 0.94152784 0.92113525 prediction 0.896668272705823 Functional Loss - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36207421 chr19:36207421 synonymous SNV . 0 21 hm5C_associated_SNPs_49975 0 0 0 0 1 ZBTB32 chr19:36207380 3'AG 36207380 Downstream 42bp
chr1 110693411 110693411 1 + C A rs149892771 110693411 + 110693391 110693431 41 CCAGCCGGGGGCCTGTGGCCCGGGGGAGGAGCTGTGCGTCC CCAGCCGGGGGCCTGTGGCCAGGGGGAGGAGCTGTGCGTCC Direct Loss 0.948293656874461 0 0.9338807 0.9278351 prediction 0.896587313748922 Functional Loss - SLC6A17 ENSG00000197106 UTR5 Human protein_coding chr1:110693411 chr1:110693411 . . 0 21 hm5C_associated_SNPs_49983 0 0 0 0 1 SLC6A17 chr1:110693505 5'GT 110693505 Upstream 95bp
chr14 94568857 94568857 1 + C T SKCM 94568857 + 94568837 94568877 41 TCTGTGACATCTAAAGTTATCGGGGGCTTTGCTGGGACAGC TCTGTGACATCTAAAGTTATTGGGGGCTTTGCTGGGACAGC Direct Loss 0.948287625986684 0 0.9544388 0.926687 prediction 0.896575251973368 Functional Loss - IFI27L1 ENSG00000165948 CDS Human protein_coding chr14:94568857 chr14:94568857 synonymous SNV . 0 21 hm5C_associated_SNPs_49984 0 0 1 0 1 IFI27L1 chr14:94568823 3'AG 94568823 Downstream 35bp
chr1 20662908 20662908 1 + C T UCEC 20662908 + 20662888 20662928 41 TGGAGACTGTGCCAAGAACTCGGGGGCACCCTTCATCCTAG TGGAGACTGTGCCAAGAACTTGGGGGCACCCTTCATCCTAG Direct Loss 0.948272073403706 0 0.9392768 0.8443335 prediction 0.896544146807413 Functional Loss - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20662908 chr1:20662908 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_49987 0 0 0 0 1 VWA5B1 chr1:20662979 5'GT 20662979 Upstream 72bp
chr19 50939300 50939300 1 + C A LUAD 50939300 + 50939280 50939320 41 GTGGTCGTGGCCAAGGTGAACGGGAAGGAGCTCCCAGACAA GTGGTCGTGGCCAAGGTGAAAGGGAAGGAGCTCCCAGACAA Direct Loss 0.948262894302682 0 0.73032343 0.7000934 prediction 0.896525788605363 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50939300 chr19:50939300 nonsynonymous SNV 0.979 0 21 hm5C_associated_SNPs_49988 0 0 0 0 1 MYBPC2 chr19:50939269 3'AG 50939269 Downstream 32bp
chr17 33325679 33325679 1 + C T UCEC 33325679 + 33325659 33325699 41 GTGAAGAAAGACTATTTGAACGAGGGGGCCATGGCCGACAC GTGAAGAAAGACTATTTGAATGAGGGGGCCATGGCCGACAC Direct Loss 0.948258808852711 0 0.91109693 0.8926859 prediction 0.896517617705422 Functional Loss - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33325679 chr17:33325679 synonymous SNV . 0 21 hm5C_associated_SNPs_49990 0 0 1 0 1 LIG3 chr17:33325746 5'GT 33325746 Upstream 68bp
chr2 144381776 144381776 1 + C T UCEC 144381776 + 144381756 144381796 41 GAGCACTGAAGATGTTTTTCCGGGAGCTGCCTGAGCCGCTC GAGCACTGAAGATGTTTTTCTGGGAGCTGCCTGAGCCGCTC Direct Loss 0.948200843765675 0 0.9198916 0.892016 prediction 0.89640168753135 Functional Loss - ARHGAP15 ENSG00000075884 CDS Human protein_coding chr2:144381776 chr2:144381776 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_49998 0 0 0 0 2 ARHGAP15 chr2:144381702 3'AG 144381702 Downstream 75bp
chr2 144381776 144381776 1 + C T UCEC 144381776 + 144381756 144381796 41 GAGCACTGAAGATGTTTTTCCGGGAGCTGCCTGAGCCGCTC GAGCACTGAAGATGTTTTTCTGGGAGCTGCCTGAGCCGCTC Direct Loss 0.948200843765675 0 0.9198916 0.892016 prediction 0.89640168753135 Functional Loss - ARHGAP15 ENSG00000075884 CDS Human protein_coding chr2:144381776 chr2:144381776 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_49998 0 0 0 0 2 ARHGAP15 chr2:144381836 5'GT 144381836 Upstream 61bp
chr11 32852167 32852167 1 + C T rs61889489 32852167 + 32852147 32852187 41 TCCAAAGGCTTCTAAGCATGCGGGAGAAGAAGGTAAGCACT TCCAAAGGCTTCTAAGCATGTGGGAGAAGAAGGTAAGCACT Direct Loss 0.948196461454601 0 0.9145192 0.8786497 prediction 0.896392922909201 Functional Loss - PRRG4 ENSG00000135378 CDS Human protein_coding chr11:32852167 chr11:32852167 nonsynonymous SNV 0.035 1 21 hm5C_associated_SNPs_50000 0 0 0 0 1 PRRG4 chr11:32852178 5'GT 32852178 Upstream 12bp
chr5 161524799 161524799 1 + C A LUAD 161524799 + 161524779 161524819 41 TCCAAAAAAGCTGATGCACACTGGATCACCACCCCCAACAG TCCAAAAAAGCTGATGCACAATGGATCACCACCCCCAACAG Direct Loss 0.948186605198602 0 0.39930147 0.22903985 prediction 0.896373210397204 Functional Loss - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161524799 chr5:161524799 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_50003 0 0 0 0 1 GABRG2 chr5:161524864 5'GT 161524864 Upstream 66bp
chr14 24108198 24108198 1 + C T STAD 24108198 + 24108178 24108218 41 TAACCGGGTAGCCGTGGTCACGGGGTCCACCAGTGGGTGAG TAACCGGGTAGCCGTGGTCATGGGGTCCACCAGTGGGTGAG Direct Loss 0.948185596716626 0 0.92528903 0.8749869 prediction 0.896371193433252 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24108198 chr14:24108198 nonsynonymous SNV 0.026 4 21 hm5C_associated_SNPs_50004 0 0 1 0 1 DHRS2 chr14:24108213 5'GT 24108213 Upstream 16bp
chr2 169417792 169417792 1 + C T SKCM 169417792 + 169417772 169417812 41 GGTTTCGACAAAGACGCAATCAGGAGAAGCCAAGCACGCTG GGTTTCGACAAAGACGCAATTAGGAGAAGCCAAGCACGCTG Direct Loss 0.948171856879196 0 0.9100449 0.8799691 prediction 0.896343713758392 Functional Loss - CERS6 ENSG00000172292 CDS Human protein_coding chr2:169417792 chr2:169417792 stopgain 0.999 1 21 hm5C_associated_SNPs_50005 0 0 1 0 2 CERS6 chr2:169417702 3'AG 169417702 Downstream 91bp
chr2 169417792 169417792 1 + C T SKCM 169417792 + 169417772 169417812 41 GGTTTCGACAAAGACGCAATCAGGAGAAGCCAAGCACGCTG GGTTTCGACAAAGACGCAATTAGGAGAAGCCAAGCACGCTG Direct Loss 0.948171856879196 0 0.9100449 0.8799691 prediction 0.896343713758392 Functional Loss - CERS6 ENSG00000172292 CDS Human protein_coding chr2:169417792 chr2:169417792 stopgain 0.999 1 21 hm5C_associated_SNPs_50005 0 0 1 0 2 CERS6 chr2:169417832 5'GT 169417832 Upstream 41bp
chr14 23072576 23072576 1 + C T GBM 23072576 + 23072556 23072596 41 TGACATCGATAGAGACATGGCGGGAGACCATGGGGATCCCC TGACATCGATAGAGACATGGTGGGAGACCATGGGGATCCCC Direct Loss 0.948115610879127 0 0.64969444 0.52311254 prediction 0.896231221758253 Functional Loss - ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23072576 chr14:23072576 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_50012 0 0 0 0 1 ABHD4 chr14:23072667 5'GT 23072667 Upstream 92bp
chr17 51901021 51901021 1 - G C HNSC 51901021 - 51901001 51901041 41 ACGCAGATGCGATGTTCTTGCGGGGGCTCCAGGACTGAGAT ACGCAGATGCGATGTTCTTGGGGGGGCTCCAGGACTGAGAT Direct Loss 0.948095842774379 0 0.93844163 0.9300417 prediction 0.896191685548758 Functional Loss - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51901021 chr17:51901021 synonymous SNV . 0 21 hm5C_associated_SNPs_50014 0 0 0 0 1 KIF2B chr17:51901090 3'AG 51901090 Downstream 70bp
chr1 11907648 11907648 1 + C T rs5063 11907648 + 11907628 11907668 41 CATCAGGTCTGCGTTGGACACGGCATTGTACATGGGATTAG CATCAGGTCTGCGTTGGACATGGCATTGTACATGGGATTAG Direct Loss 0.948073123703975 0 0.44823182 0.4136017 prediction 0.89614624740795 Functional Loss - NPPA ENSG00000175206 CDS Human protein_coding chr1:11907648 chr1:11907648 nonsynonymous SNV 0.015 0 21 hm5C_associated_SNPs_50017 0 0 0 0 1 NPPA chr1:11907634 3'AG 11907634 Downstream 15bp
chr12 10217424 10217424 1 + C A LUAD 10217424 + 10217404 10217444 41 ACAGCGGACGCTGGCTTTGGCAAGATGGCTCCTCTCCTTCT ACAGCGGACGCTGGCTTTGGAAAGATGGCTCCTCTCCTTCT Direct Loss 0.948033968069703 0 0.9245336 0.92268616 prediction 0.896067936139406 Functional Loss - CLEC9A ENSG00000197992 CDS Human protein_coding chr12:10217424 chr12:10217424 nonsynonymous SNV 0.265 0 21 hm5C_associated_SNPs_50020 0 0 0 0 2 CLEC9A chr12:10217331 3'AG 10217331 Downstream 94bp
chr12 10217424 10217424 1 + C A LUAD 10217424 + 10217404 10217444 41 ACAGCGGACGCTGGCTTTGGCAAGATGGCTCCTCTCCTTCT ACAGCGGACGCTGGCTTTGGAAAGATGGCTCCTCTCCTTCT Direct Loss 0.948033968069703 0 0.9245336 0.92268616 prediction 0.896067936139406 Functional Loss - CLEC9A ENSG00000197992 CDS Human protein_coding chr12:10217424 chr12:10217424 nonsynonymous SNV 0.265 0 21 hm5C_associated_SNPs_50020 0 0 0 0 2 CLEC9A chr12:10217452 5'GT 10217452 Upstream 29bp
chr3 42982786 42982786 1 + C A LUAD 42982786 + 42982766 42982806 41 TGGGCCATCATGGTGCCTGCCGAGAGGGCCTTGTACAGGGA TGGGCCATCATGGTGCCTGCAGAGAGGGCCTTGTACAGGGA Direct Loss 0.947989651098619 0 0.3343666 0.36944273 prediction 0.895979302197238 Functional Loss - KRBOX1 ENSG00000240747;ENSG00000273291 CDS Human other chr3:42982786 chr3:42982786 synonymous SNV . 0 21 hm5C_associated_SNPs_50025 0 0 0 0 2 KRBOX1 chr3:42982718 3'AG 42982718 Downstream 69bp
chr3 42982786 42982786 1 + C A LUAD 42982786 + 42982766 42982806 41 TGGGCCATCATGGTGCCTGCCGAGAGGGCCTTGTACAGGGA TGGGCCATCATGGTGCCTGCAGAGAGGGCCTTGTACAGGGA Direct Loss 0.947989651098619 0 0.3343666 0.36944273 prediction 0.895979302197238 Functional Loss - KRBOX1 ENSG00000240747;ENSG00000273291 CDS Human other chr3:42982786 chr3:42982786 synonymous SNV . 0 21 hm5C_associated_SNPs_50025 0 0 0 0 2 KRBOX1 chr3:42982844 5'GT 42982844 Upstream 59bp
chr5 150847396 150847396 1 + C A BLCA 150847396 + 150847376 150847416 41 CTGGTGCTGCTGGTTTTCATCAGGAACCTCCGAGCCCTGTC CTGGTGCTGCTGGTTTTCATAAGGAACCTCCGAGCCCTGTC Direct Loss 0.947985792973652 0 0.95180905 0.5628483 prediction 0.895971585947305 Functional Loss - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150847396 chr5:150847396 synonymous SNV . 0 21 hm5C_associated_SNPs_50028 0 0 0 0 1 SLC36A1 chr5:150847486 5'GT 150847486 Upstream 91bp
chr11 65631361 65631361 1 + C G rs34891773 65631361 + 65631341 65631381 41 GCATCATCGACGGCCGCTTCCGGGAGCAGAAGGTAATTTTG GCATCATCGACGGCCGCTTCGGGGAGCAGAAGGTAATTTTG Direct Loss 0.947984028125915 0 0.94483596 0.92370063 prediction 0.89596805625183 Functional Loss - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65631361 chr11:65631361 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_50029 0 0 1 0 2 MUS81 chr11:65631275 3'AG 65631275 Downstream 87bp
chr11 65631361 65631361 1 + C G rs34891773 65631361 + 65631341 65631381 41 GCATCATCGACGGCCGCTTCCGGGAGCAGAAGGTAATTTTG GCATCATCGACGGCCGCTTCGGGGAGCAGAAGGTAATTTTG Direct Loss 0.947984028125915 0 0.94483596 0.92370063 prediction 0.89596805625183 Functional Loss - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65631361 chr11:65631361 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_50029 0 0 1 0 2 MUS81 chr11:65631372 5'GT 65631372 Upstream 12bp
chr1 156105746 156105746 1 + C T UCEC 156105746 + 156105726 156105766 41 AGGACTCACTGGCCCGTGAGCGGGACACCAGCCGGCGGCTG AGGACTCACTGGCCCGTGAGTGGGACACCAGCCGGCGGCTG Direct Loss 0.947979343228658 0 0.91106457 0.86360204 prediction 0.895958686457317 Functional Loss - LMNA ENSG00000160789 CDS Human protein_coding chr1:156105746 chr1:156105746 nonsynonymous SNV 0.998 5 21 hm5C_associated_SNPs_50031 1 0 1 0 1 LMNA chr1:156105692 3'AG 156105692 Downstream 55bp
chr8 24193084 24193084 1 + C T COAD 24193084 + 24193064 24193104 41 AATGGCTTCCCTTGCCATCACGGGAAGGGCCACTGCTTGAT AATGGCTTCCCTTGCCATCATGGGAAGGGCCACTGCTTGAT Direct Loss 0.947971797129786 0 0.9145585 0.923012 prediction 0.895943594259571 Functional Loss - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24193084 chr8:24193084 synonymous SNV . 0 21 hm5C_associated_SNPs_50032 0 0 0 0 1 ADAM28 chr8:24193154 5'GT 24193154 Upstream 71bp
chrX 23801995 23801995 1 + C T SKCM 23801995 + 23801975 23802015 41 GCCGAAAGAGCACTGGACTCCGGAAGGTAACCCCTCGCCCT GCCGAAAGAGCACTGGACTCTGGAAGGTAACCCCTCGCCCT Direct Loss 0.947939885680815 0 0.92296636 0.8813202 prediction 0.895879771361631 Functional Loss - SAT1 ENSG00000130066 CDS Human protein_coding chrX:23801995 chrX:23801995 nonsynonymous SNV 0.860 0 21 hm5C_associated_SNPs_50035 0 0 1 0 2 SAT1 chrX:23801917 3'AG 23801917 Downstream 79bp
chrX 23801995 23801995 1 + C T SKCM 23801995 + 23801975 23802015 41 GCCGAAAGAGCACTGGACTCCGGAAGGTAACCCCTCGCCCT GCCGAAAGAGCACTGGACTCTGGAAGGTAACCCCTCGCCCT Direct Loss 0.947939885680815 0 0.92296636 0.8813202 prediction 0.895879771361631 Functional Loss - SAT1 ENSG00000130066 CDS Human protein_coding chrX:23801995 chrX:23801995 nonsynonymous SNV 0.860 0 21 hm5C_associated_SNPs_50035 0 0 1 0 2 SAT1 chrX:23802000 5'GT 23802000 Upstream 6bp
chr2 242098736 242098736 1 + C A UCEC 242098736 + 242098716 242098756 41 AGATCAAGAAGATTGAGAATCTGGAGGCGCTAACAGAGCTG AGATCAAGAAGATTGAGAATATGGAGGCGCTAACAGAGCTG Direct Loss 0.94793781338898 0 0.3294543 0.23910522 prediction 0.895875626777961 Functional Loss - PPP1R7 ENSG00000115685 CDS Human protein_coding chr2:242098736 chr2:242098736 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_50037 0 0 1 0 1 PPP1R7 chr2:242098758 5'GT 242098758 Upstream 23bp
chr12 65720647 65720647 1 + C A BRCA 65720647 + 65720627 65720667 41 ACTGTAAGGTGGTCTTTTCCCAGCAGGAACTGAGGAAGCGG ACTGTAAGGTGGTCTTTTCCAAGCAGGAACTGAGGAAGCGG Direct Loss 0.947932857348543 0 0.5536446 0.31028324 prediction 0.895865714697086 Functional Loss - MSRB3 ENSG00000174099 CDS Human protein_coding chr12:65720647 chr12:65720647 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_50038 0 0 0 0 1 MSRB3 chr12:65720714 5'GT 65720714 Upstream 68bp
chr6 28264692 28264692 1 + C G rs3800325 28264692 + 28264672 28264712 41 ACCTCTGTGGGAACTCAGCTCAGGAGACAGTTATGAGCCTC ACCTCTGTGGGAACTCAGCTGAGGAGACAGTTATGAGCCTC Direct Loss 0.947923760852782 0 0.8946778 0.8524554 prediction 0.895847521705563 Functional Loss - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28264692 chr6:28264692 nonsynonymous SNV 0.086 1 21 hm5C_associated_SNPs_50042 0 0 1 0 2 PGBD1 chr6:28264593 3'AG 28264593 Downstream 100bp
chr6 28264692 28264692 1 + C G rs3800325 28264692 + 28264672 28264712 41 ACCTCTGTGGGAACTCAGCTCAGGAGACAGTTATGAGCCTC ACCTCTGTGGGAACTCAGCTGAGGAGACAGTTATGAGCCTC Direct Loss 0.947923760852782 0 0.8946778 0.8524554 prediction 0.895847521705563 Functional Loss - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28264692 chr6:28264692 nonsynonymous SNV 0.086 1 21 hm5C_associated_SNPs_50042 0 0 1 0 2 PGBD1 chr6:28264722 5'GT 28264722 Upstream 31bp
chr10 104629869 104629869 1 + C T UCEC 104629869 + 104629849 104629889 41 CGGGCAGGTGCTGAAGAGATCGGCAGACCTCCAGACCAACG CGGGCAGGTGCTGAAGAGATTGGCAGACCTCCAGACCAACG Direct Loss 0.947923545692075 0 0.91656756 0.9092481 prediction 0.895847091384149 Functional Loss - AS3MT ENSG00000214435 CDS Human protein_coding chr10:104629869 chr10:104629869 nonsynonymous SNV 0.331 2 21 hm5C_associated_SNPs_50043 0 0 1 0 2 AS3MT chr10:104629841 3'AG 104629841 Downstream 29bp
chr10 104629869 104629869 1 + C T UCEC 104629869 + 104629849 104629889 41 CGGGCAGGTGCTGAAGAGATCGGCAGACCTCCAGACCAACG CGGGCAGGTGCTGAAGAGATTGGCAGACCTCCAGACCAACG Direct Loss 0.947923545692075 0 0.91656756 0.9092481 prediction 0.895847091384149 Functional Loss - AS3MT ENSG00000214435 CDS Human protein_coding chr10:104629869 chr10:104629869 nonsynonymous SNV 0.331 2 21 hm5C_associated_SNPs_50043 0 0 1 0 2 AS3MT chr10:104629968 5'GT 104629968 Upstream 100bp
chr5 134190985 134190985 1 + C T UCEC 134190985 + 134190965 134191005 41 TTTGGGGACAACTAAAGCTGCGGGATACAAAGTCAGCCCAG TTTGGGGACAACTAAAGCTGTGGGATACAAAGTCAGCCCAG Direct Loss 0.947918072102786 0 0.93148214 0.8780732 prediction 0.895836144205573 Functional Loss - C5orf24 ENSG00000181904 CDS Human protein_coding chr5:134190985 chr5:134190985 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_50044 0 0 1 0 1 C5orf24 chr5:134191017 5'GT 134191017 Upstream 33bp
chr3 129249837 129249837 1 + C A SARC 129249837 + 129249817 129249857 41 ATCATGGGCGTTGCCTTCACCTGGGTCATGGCGCTGGCCTG ATCATGGGCGTTGCCTTCACATGGGTCATGGCGCTGGCCTG Direct Loss 0.947907561533215 0 0.8886845 0.58120805 prediction 0.89581512306643 Functional Loss - RHO ENSG00000163914 CDS Human protein_coding chr3:129249837 chr3:129249837 synonymous SNV . 0 21 hm5C_associated_SNPs_50050 2 0 0 0 1 RHO chr3:129249887 5'GT 129249887 Upstream 51bp
chr10 135368884 135368884 1 - G T SARC 135368884 - 135368864 135368904 41 CTGCCCAAGCCCAGAGCACACAAGAGGAAGAGGCTGGCCCA CTGCCCAAGCCCAGAGCACAAAAGAGGAAGAGGCTGGCCCA Direct Loss 0.947880155603845 0 0.8375876 0.5945433 prediction 0.895760311207689 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135368884 chr10:135368884 nonsynonymous SNV 0.006 1 21 hm5C_associated_SNPs_50052 0 0 0 0 2 SYCE1 chr10:135368855 5'GT 135368855 Upstream 30bp
chr10 135368884 135368884 1 - G T SARC 135368884 - 135368864 135368904 41 CTGCCCAAGCCCAGAGCACACAAGAGGAAGAGGCTGGCCCA CTGCCCAAGCCCAGAGCACAAAAGAGGAAGAGGCTGGCCCA Direct Loss 0.947880155603845 0 0.8375876 0.5945433 prediction 0.895760311207689 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135368884 chr10:135368884 nonsynonymous SNV 0.006 1 21 hm5C_associated_SNPs_50052 0 0 0 0 2 SYCE1 chr10:135368942 3'AG 135368942 Downstream 59bp
chr3 122869160 122869160 1 + C T CESC 122869160 + 122869140 122869180 41 ACCTGGTGGGGGACAACTTCCGGGAGACCCTGAAGAAGAAG ACCTGGTGGGGGACAACTTCTGGGAGACCCTGAAGAAGAAG Direct Loss 0.947873104708535 0 0.9038441 0.87764525 prediction 0.89574620941707 Functional Loss - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122869160 chr3:122869160 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_50053 0 0 1 0 2 PDIA5 chr3:122869081 3'AG 122869081 Downstream 80bp
chr3 122869160 122869160 1 + C T CESC 122869160 + 122869140 122869180 41 ACCTGGTGGGGGACAACTTCCGGGAGACCCTGAAGAAGAAG ACCTGGTGGGGGACAACTTCTGGGAGACCCTGAAGAAGAAG Direct Loss 0.947873104708535 0 0.9038441 0.87764525 prediction 0.89574620941707 Functional Loss - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122869160 chr3:122869160 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_50053 0 0 1 0 2 PDIA5 chr3:122869211 5'GT 122869211 Upstream 52bp
chr2 29221040 29221040 1 + C A rs72786173 29221040 + 29221020 29221060 41 GTCCCCGTGGCCGTGTACTGCGGGAGCATCCCTCGGACCAG GTCCCCGTGGCCGTGTACTGAGGGAGCATCCCTCGGACCAG Direct Loss 0.947865109345603 0 0.9291358 0.9194268 prediction 0.895730218691206 Functional Loss - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29221040 chr2:29221040 stopgain 0.008 0 21 hm5C_associated_SNPs_50054 0 0 0 0 2 TOGARAM2 chr2:29221009 3'AG 29221009 Downstream 32bp
chr2 29221040 29221040 1 + C A rs72786173 29221040 + 29221020 29221060 41 GTCCCCGTGGCCGTGTACTGCGGGAGCATCCCTCGGACCAG GTCCCCGTGGCCGTGTACTGAGGGAGCATCCCTCGGACCAG Direct Loss 0.947865109345603 0 0.9291358 0.9194268 prediction 0.895730218691206 Functional Loss - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29221040 chr2:29221040 stopgain 0.008 0 21 hm5C_associated_SNPs_50054 0 0 0 0 2 TOGARAM2 chr2:29221119 5'GT 29221119 Upstream 80bp
chrX 118602549 118602549 1 + C T UCEC 118602549 + 118602529 118602569 41 GGCCGCAGCCATCTCCAAGACGGCGGTAGCGCCCATCGAGC GGCCGCAGCCATCTCCAAGATGGCGGTAGCGCCCATCGAGC Direct Loss 0.947861488287653 0 0.89864147 0.7955669 prediction 0.895722976575305 Functional Loss - SLC25A5 ENSG00000005022 CDS Human protein_coding chrX:118602549 chrX:118602549 nonsynonymous SNV 0.977 3 21 hm5C_associated_SNPs_50055 0 0 1 0 1 SLC25A5 chrX:118602589 5'GT 118602589 Upstream 41bp
chr7 73638356 73638356 1 + C T STAD 73638356 + 73638336 73638376 41 CCCTCTCTGCAGGTGCCCAGCAGGAGGGCATAGGTGGCCTC CCCTCTCTGCAGGTGCCCAGTAGGAGGGCATAGGTGGCCTC Direct Loss 0.947855534714948 0 0.87435687 0.7991345 prediction 0.895711069429897 Functional Loss - LAT2 ENSG00000086730 CDS Human protein_coding chr7:73638356 chr7:73638356 stopgain 0.004 0 21 hm5C_associated_SNPs_50056 0 0 0 0 1 LAT2 chr7:73638348 3'AG 73638348 Downstream 9bp
chr17 78092070 78092070 1 + C T rs121907943 78092070 + 78092050 78092090 41 TGACCAAGGGTGGGGAGGCCCGAGGGGAGCTGTTCTGGGAC TGACCAAGGGTGGGGAGGCCTGAGGGGAGCTGTTCTGGGAC Direct Loss 0.947840165415031 0 0.9102343 0.9053564 prediction 0.895680330830062 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78092070 chr17:78092070 stopgain 0.021 0 21 hm5C_associated_SNPs_50057 2 0 1 0 2 GAA chr17:78091992 3'AG 78091992 Downstream 79bp
chr17 78092070 78092070 1 + C T rs121907943 78092070 + 78092050 78092090 41 TGACCAAGGGTGGGGAGGCCCGAGGGGAGCTGTTCTGGGAC TGACCAAGGGTGGGGAGGCCTGAGGGGAGCTGTTCTGGGAC Direct Loss 0.947840165415031 0 0.9102343 0.9053564 prediction 0.895680330830062 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78092070 chr17:78092070 stopgain 0.021 0 21 hm5C_associated_SNPs_50057 2 0 1 0 2 GAA chr17:78092156 5'GT 78092156 Upstream 87bp
chr11 66743038 66743038 1 + C A COAD 66743038 + 66743018 66743058 41 AGGAGCGGGTGCCGGGGAGCCTGGGGGACACAGAGCAGCTG AGGAGCGGGTGCCGGGGAGCATGGGGGACACAGAGCAGCTG Direct Loss 0.947836794465328 0 0.92763186 0.9161918 prediction 0.895673588930655 Functional Loss - C11orf86 ENSG00000173237 CDS Human protein_coding chr11:66743038 chr11:66743038 nonsynonymous SNV 0.700 3 21 hm5C_associated_SNPs_50058 0 0 0 0 1 C11orf86 chr11:66743109 5'GT 66743109 Upstream 72bp
chr8 145150812 145150812 1 + C T UCEC 145150812 + 145150792 145150832 41 AGCGCTGGGCATGCTGGCGGCAGGGGGTGCGGGGCTGGCCA AGCGCTGGGCATGCTGGCGGTAGGGGGTGCGGGGCTGGCCA Direct Loss 0.94777596547992 0 0.9081303 0.8895519 prediction 0.89555193095984 Functional Loss - CYC1 ENSG00000179091 CDS Human protein_coding chr8:145150812 chr8:145150812 nonsynonymous SNV 0.983 1 21 hm5C_associated_SNPs_50072 0 0 1 0 1 CYC1 chr8:145150736 3'AG 145150736 Downstream 77bp
chr16 66503684 66503684 1 + C T rs184299677 66503684 + 66503664 66503704 41 ACAGGCAGGCCCGGCTTCAGCGGCACCGCCACCGCCACCAC ACAGGCAGGCCCGGCTTCAGTGGCACCGCCACCGCCACCAC Direct Loss 0.947769589267658 0 0.46830717 0.37976924 prediction 0.895539178535316 Functional Loss - BEAN1 ENSG00000166546 CDS Human protein_coding chr16:66503684 chr16:66503684 nonsynonymous SNV 0.967 1 21 hm5C_associated_SNPs_50073 0 0 0 0 1 BEAN1 chr16:66503768 5'GT 66503768 Upstream 85bp
chr16 57789031 57789031 1 + C T STAD 57789031 + 57789011 57789051 41 GCTGAGTTTCACACTTTCAGCTGGAGGTCCTGCCCCGGCCC GCTGAGTTTCACACTTTCAGTTGGAGGTCCTGCCCCGGCCC Direct Loss 0.947761232755736 0 0.9100876 0.9108317 prediction 0.895522465511472 Functional Loss - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57789031 chr16:57789031 synonymous SNV . 0 21 hm5C_associated_SNPs_50075 0 0 0 0 1 KATNB1 chr16:57789031 3'AG 57789031 Downstream 1bp
chr6 41011324 41011324 1 + C T LUAD 41011324 + 41011304 41011344 41 CCTACCTGGTGTGGAAGGACCTGGGAGGGGGCTTGGGGTGG CCTACCTGGTGTGGAAGGACTTGGGAGGGGGCTTGGGGTGG Direct Loss 0.947760037502799 0 0.8882799 0.8933876 prediction 0.895520075005598 Functional Loss - TSPO2 ENSG00000112212 CDS Human protein_coding chr6:41011324 chr6:41011324 synonymous SNV . 0 21 hm5C_associated_SNPs_50076 0 0 0 0 1 TSPO2 chr6:41011296 3'AG 41011296 Downstream 29bp
chr16 71660355 71660355 1 + C T ESCA 71660355 + 71660335 71660375 41 ACCGCGACCGGAACCGGGACCGGGAGAGGGAGAGAGAGAGG ACCGCGACCGGAACCGGGACTGGGAGAGGGAGAGAGAGAGG Direct Loss 0.947744470254391 0 0.9038821 0.88904434 prediction 0.895488940508783 Functional Loss - MARVELD3 ENSG00000140832 CDS Human protein_coding chr16:71660355 chr16:71660355 nonsynonymous SNV 0.068 2 21 hm5C_associated_SNPs_50077 0 0 0 0 1 MARVELD3 chr16:71660436 5'GT 71660436 Upstream 82bp
chr1 152759797 152759797 1 + C A COAD 152759797 + 152759777 152759817 41 TGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCCCCTCCC TGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCCCCTCCC Direct Loss 0.947740416741466 0 0.58977056 0.2087847 prediction 0.895480833482933 Functional Loss - LCE1E ENSG00000186226 CDS Human protein_coding chr1:152759797 chr1:152759797 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_50078 0 0 0 0 1 LCE1E chr1:152759754 3'AG 152759754 Downstream 44bp
chr19 41726605 41726605 1 + C T STAD 41726605 + 41726585 41726625 41 ATCACAGGTGCCCGGGGACTCACGGGCACCCTTCGGTGTCA ATCACAGGTGCCCGGGGACTTACGGGCACCCTTCGGTGTCA Direct Loss 0.947731689790691 0 0.89838254 0.8027866 prediction 0.895463379581383 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41726605 chr19:41726605 synonymous SNV . 0 21 hm5C_associated_SNPs_50079 0 0 0 0 1 AXL chr19:41726541 3'AG 41726541 Downstream 65bp
chr3 197025476 197025476 1 + C G rs569635893 197025476 + 197025456 197025496 41 AGAGACAGCGCCTGGCGACCCCGGGGGTAGATCCCCACCGG AGAGACAGCGCCTGGCGACCGCGGGGGTAGATCCCCACCGG Direct Loss 0.947724787324189 0 0.9380189 0.9397032 prediction 0.895449574648377 Functional Loss - DLG1-AS1 ENSG00000227375 ncRNA_exonic Human antisense chr3:197025476 chr3:197025476 . . 0 21 hm5C_associated_SNPs_50081 0 0 0 0 1 DLG1-AS1 chr3:197025481 5'GT 197025481 Upstream 6bp
chr1 229431628 229431628 1 + C T UCEC 229431628 + 229431608 229431648 41 AGTTATTACCGAGGCGCGGCCGGGGCTCTCCTCGTCTATGA AGTTATTACCGAGGCGCGGCTGGGGCTCTCCTCGTCTATGA Direct Loss 0.947686076417229 0 0.8961743 0.8576143 prediction 0.895372152834458 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229431628 chr1:229431628 synonymous SNV . 0 21 hm5C_associated_SNPs_50085 0 0 1 2 2 RAB4A chr1:229431595 3'AG 229431595 Downstream 34bp
chr1 229431628 229431628 1 + C T UCEC 229431628 + 229431608 229431648 41 AGTTATTACCGAGGCGCGGCCGGGGCTCTCCTCGTCTATGA AGTTATTACCGAGGCGCGGCTGGGGCTCTCCTCGTCTATGA Direct Loss 0.947686076417229 0 0.8961743 0.8576143 prediction 0.895372152834458 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229431628 chr1:229431628 synonymous SNV . 0 21 hm5C_associated_SNPs_50085 0 0 1 2 2 RAB4A chr1:229431657 5'GT 229431657 Upstream 30bp
chrX 38262963 38262963 1 + C T KIRC 38262963 + 38262943 38262983 41 ATGATGAGCGCAGCGAAATTCGGAATGCACCTTCAGGCAGC ATGATGAGCGCAGCGAAATTTGGAATGCACCTTCAGGCAGC Direct Loss 0.947681200289321 0 0.9115702 0.6240543 prediction 0.895362400578643 Functional Loss - OTC ENSG00000036473 CDS Human protein_coding chrX:38262963 chrX:38262963 synonymous SNV . 0 21 hm5C_associated_SNPs_50087 0 0 0 0 2 OTC chrX:38262871 3'AG 38262871 Downstream 93bp
chrX 38262963 38262963 1 + C T KIRC 38262963 + 38262943 38262983 41 ATGATGAGCGCAGCGAAATTCGGAATGCACCTTCAGGCAGC ATGATGAGCGCAGCGAAATTTGGAATGCACCTTCAGGCAGC Direct Loss 0.947681200289321 0 0.9115702 0.6240543 prediction 0.895362400578643 Functional Loss - OTC ENSG00000036473 CDS Human protein_coding chrX:38262963 chrX:38262963 synonymous SNV . 0 21 hm5C_associated_SNPs_50087 0 0 0 0 2 OTC chrX:38262993 5'GT 38262993 Upstream 31bp
chrX 49021567 49021567 1 + C T UCEC 49021567 + 49021547 49021587 41 ACATCAACGGAGAGTCAACGCAGGGCCTCACCCATGCCCAG ACATCAACGGAGAGTCAACGTAGGGCCTCACCCATGCCCAG Direct Loss 0.947618889888056 0 0.8992313 0.8763623 prediction 0.895237779776112 Functional Loss - MAGIX ENSG00000017621 CDS Human other chrX:49021567 chrX:49021567 stopgain 0.899 0 21 hm5C_associated_SNPs_50091 0 0 0 0 1 MAGIX chrX:49021528 3'AG 49021528 Downstream 40bp
chr2 219294189 219294189 1 + A C rs141545095 219294185 + 219294165 219294205 41 ACACGGTGGTGGAGCCGGCACTCAAGGCTGCACTCAAACTG ACACGGTGGTGGAGCCGGCACTCACGGCTGCACTCAAACTG < 41bp 0.868624387701023 0.500163775426623 0.22476 0.11894676 prediction 0.736921224548799 Functional Loss - VIL1 ENSG00000127831;ENSG00000127831 exonic;splicing Human protein_coding chr2:219294185 chr2:219294189 nonsynonymous SNV 0.896 1 25 hm5C_associated_SNPs_50092 0 0 1 0 1 VIL1 chr2:219294210 5'GT 219294210 Upstream 22bp
chr20 53205259 53205259 1 + A C LUSC 53205255 + 53205235 53205275 41 CTGATGAGTGGTGCAAAGTACTCCAGATGGAGTGTGTAGGA CTGATGAGTGGTGCAAAGTACTCCCGATGGAGTGTGTAGGA < 41bp 0.862824212051974 0.488312336215187 0.7216017 0.084116995 prediction 0.725648424103949 Functional Loss - DOK5 ENSG00000101134 CDS Human protein_coding chr20:53205255 chr20:53205259 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_50094 0 0 0 0 2 DOK5 chr20:53205226 3'AG 53205226 Downstream 34bp
chr20 53205259 53205259 1 + A C LUSC 53205255 + 53205235 53205275 41 CTGATGAGTGGTGCAAAGTACTCCAGATGGAGTGTGTAGGA CTGATGAGTGGTGCAAAGTACTCCCGATGGAGTGTGTAGGA < 41bp 0.862824212051974 0.488312336215187 0.7216017 0.084116995 prediction 0.725648424103949 Functional Loss - DOK5 ENSG00000101134 CDS Human protein_coding chr20:53205255 chr20:53205259 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_50094 0 0 0 0 2 DOK5 chr20:53205345 5'GT 53205345 Upstream 87bp
chr9 34506802 34506802 1 + A C STAD 34506798 + 34506778 34506818 41 GCAACGTGGCCATTTACAACCTCAAGAAGCCCCACTCCCAG GCAACGTGGCCATTTACAACCTCACGAAGCCCCACTCCCAG < 41bp 0.875701659258484 0.515268678212781 0.096346766 0.028285861 prediction 0.720865962091405 Functional Loss - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34506798 chr9:34506802 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_50096 0 0 0 0 1 DNAI1 chr9:34506872 5'GT 34506872 Upstream 71bp
chr15 42113178 42113178 1 + A C LUSC 42113174 + 42113154 42113194 41 TGGAAACACTGGCCCCAAGCCTGCAGGACCCTAGCCAGGAC TGGAAACACTGGCCCCAAGCCTGCCGGACCCTAGCCAGGAC < 41bp 0.857392039193671 0.479073861872815 0.26940972 0.36637482 prediction 0.714784078387343 Functional Loss - MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42113174 chr15:42113178 nonsynonymous SNV 0.014 0 25 hm5C_associated_SNPs_50100 0 0 0 0 1 MAPKBP1 chr15:42113266 5'GT 42113266 Upstream 89bp
chrX 11316741 11316741 1 + A C rs749213434 11316737 + 11316717 11316757 41 TCATCCCCGTGCTGTCCCAACAGCACCCCCCGACTCACACC TCATCCCCGTGCTGTCCCAACAGCCCCCCCCGACTCACACC < 41bp 0.856120238464735 0.497158504097521 0.06795579 0.046703905 prediction 0.71224047692947 Functional Loss - AMELX ENSG00000125363 CDS Human protein_coding chrX:11316737 chrX:11316741 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_50102 0 0 0 0 1 AMELX chrX:11316668 3'AG 11316668 Downstream 74bp
chr11 64973961 64973961 1 + A C GBM 64973957 + 64973937 64973977 41 GTGGGCCAGCCGGCCGTACACTTGAAGCGTGACTTCTTCCT GTGGGCCAGCCGGCCGTACACTTGCAGCGTGACTTCTTCCT < 41bp 0.855842816503908 0.496099917836796 0.18140855 0.05020657 prediction 0.711685633007816 Functional Loss - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64973957 chr11:64973961 nonsynonymous SNV 0.785 2 25 hm5C_associated_SNPs_50103 0 0 1 0 1 CAPN1 chr11:64973934 3'AG 64973934 Downstream 28bp
chr19 47491306 47491306 1 + A C SKCM 47491302 + 47491282 47491322 41 ACAAGTCTGAGATGGAGAGTCTGCAGAGACAGTTTGATCAA ACAAGTCTGAGATGGAGAGTCTGCCGAGACAGTTTGATCAA < 41bp 0.85583983607926 0.479258186367007 0.56733614 0.35377848 prediction 0.711679672158519 Functional Loss - ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491302 chr19:47491306 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_50104 0 0 1 0 2 ARHGAP35 chr19:47491246 3'AG 47491246 Downstream 61bp
chr19 47491306 47491306 1 + A C SKCM 47491302 + 47491282 47491322 41 ACAAGTCTGAGATGGAGAGTCTGCAGAGACAGTTTGATCAA ACAAGTCTGAGATGGAGAGTCTGCCGAGACAGTTTGATCAA < 41bp 0.85583983607926 0.479258186367007 0.56733614 0.35377848 prediction 0.711679672158519 Functional Loss - ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491302 chr19:47491306 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_50104 0 0 1 0 2 ARHGAP35 chr19:47491323 5'GT 47491323 Upstream 18bp
chr5 131606661 131606661 1 + A C UCEC 131606657 + 131606637 131606677 41 CTCAGGCACCGGGACTGGGCCAGAAGATGGCAGACCAAGCC CTCAGGCACCGGGACTGGGCCAGACGATGGCAGACCAAGCC < 41bp 0.855834362646865 0.500218977941992 0.12203443 0.112220705 prediction 0.711230769409747 Functional Loss - PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131606657 chr5:131606661 nonsynonymous SNV 0.605 0 25 hm5C_associated_SNPs_50105 0 0 0 0 1 PDLIM4 chr5:131606608 3'AG 131606608 Downstream 54bp
chr17 48753029 48753029 1 + G T LUAD 48753026 + 48753006 48753046 41 TGTCCTCAGATGGGGAGGGACAGGGTCGGCCTGTACCCCGG TGTCCTCAGATGGGGAGGGACAGTGTCGGCCTGTACCCCGG < 41bp 0.855388937336333 0.497730917965042 0.9278975 0.20596662 prediction 0.710777874672665 Functional Loss - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48753026 chr17:48753029 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_50107 0 0 1 0 1 ABCC3 chr17:48752992 3'AG 48752992 Downstream 38bp
chr9 97218576 97218576 1 + A C rs138907021 97218572 + 97218552 97218592 41 CATGTCCAGCATCACGTTTCCGGCAATCAGTGCCCTCGTCT CATGTCCAGCATCACGTTTCCGGCCATCAGTGCCCTCGTCT < 41bp 0.854394673095109 0.490263198796959 0.79647124 0.54195446 prediction 0.708789346190218 Functional Loss - MFSD14B ENSG00000148110 CDS Human protein_coding chr9:97218572 chr9:97218576 synonymous SNV . 0 25 hm5C_associated_SNPs_50108 0 0 1 0 2 MFSD14B chr9:97218522 3'AG 97218522 Downstream 55bp
chr9 97218576 97218576 1 + A C rs138907021 97218572 + 97218552 97218592 41 CATGTCCAGCATCACGTTTCCGGCAATCAGTGCCCTCGTCT CATGTCCAGCATCACGTTTCCGGCCATCAGTGCCCTCGTCT < 41bp 0.854394673095109 0.490263198796959 0.79647124 0.54195446 prediction 0.708789346190218 Functional Loss - MFSD14B ENSG00000148110 CDS Human protein_coding chr9:97218572 chr9:97218576 synonymous SNV . 0 25 hm5C_associated_SNPs_50108 0 0 1 0 2 MFSD14B chr9:97218619 5'GT 97218619 Upstream 44bp
chr2 27666892 27666892 1 + A C COAD 27666888 + 27666868 27666908 41 AGCAGCTACTGGATCAAAATCAAGAAATCCGGGCATCACAG AGCAGCTACTGGATCAAAATCAAGCAATCCGGGCATCACAG < 41bp 0.854177069496918 0.493821895719654 0.8786644 0.8710553 prediction 0.708354138993837 Functional Loss - KRTCAP3 ENSG00000157992 CDS Human protein_coding chr2:27666888 chr2:27666892 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_50110 0 0 0 0 2 KRTCAP3 chr2:27666816 3'AG 27666816 Downstream 77bp
chr2 27666892 27666892 1 + A C COAD 27666888 + 27666868 27666908 41 AGCAGCTACTGGATCAAAATCAAGAAATCCGGGCATCACAG AGCAGCTACTGGATCAAAATCAAGCAATCCGGGCATCACAG < 41bp 0.854177069496918 0.493821895719654 0.8786644 0.8710553 prediction 0.708354138993837 Functional Loss - KRTCAP3 ENSG00000157992 CDS Human protein_coding chr2:27666888 chr2:27666892 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_50110 0 0 0 0 2 KRTCAP3 chr2:27666928 5'GT 27666928 Upstream 37bp
chr11 60561516 60561516 1 + G T LUSC 60561513 + 60561493 60561533 41 TCTGGCCTCTTCGTCATCTCCAAGGATCTCTTTCTGGAGAG TCTGGCCTCTTCGTCATCTCCAATGATCTCTTTCTGGAGAG < 41bp 0.853374903562286 0.497629760438193 0.39756188 0.02401954 prediction 0.706749807124571 Functional Loss - MS4A10 ENSG00000172689 CDS Human protein_coding chr11:60561513 chr11:60561516 nonsynonymous SNV 0.960 2 24 hm5C_associated_SNPs_50113 0 0 0 0 2 MS4A10 chr11:60561445 3'AG 60561445 Downstream 72bp
chr11 60561516 60561516 1 + G T LUSC 60561513 + 60561493 60561533 41 TCTGGCCTCTTCGTCATCTCCAAGGATCTCTTTCTGGAGAG TCTGGCCTCTTCGTCATCTCCAATGATCTCTTTCTGGAGAG < 41bp 0.853374903562286 0.497629760438193 0.39756188 0.02401954 prediction 0.706749807124571 Functional Loss - MS4A10 ENSG00000172689 CDS Human protein_coding chr11:60561513 chr11:60561516 nonsynonymous SNV 0.960 2 24 hm5C_associated_SNPs_50113 0 0 0 0 2 MS4A10 chr11:60561576 5'GT 60561576 Upstream 61bp
chr17 63221166 63221166 1 + G T SKCM 63221163 + 63221143 63221183 41 CCCCCATCTGACCGTGTACACCGGGACCTGCATGCCCCCGT CCCCCATCTGACCGTGTACACCGTGACCTGCATGCCCCCGT < 41bp 0.856628948386363 0.503326010164378 0.9119747 0.23852083 prediction 0.706605876443971 Functional Loss - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63221163 chr17:63221166 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_50114 0 0 0 0 1 RGS9 chr17:63221120 3'AG 63221120 Downstream 47bp
chr1 160182974 160182974 1 + A C ACC 160182970 + 160182950 160182990 41 CTACTCACTATGGTGGTTGACTACAGAACCCGTGTGCTGAA CTACTCACTATGGTGGTTGACTACCGAACCCGTGTGCTGAA < 41bp 0.853285282546537 0.476315024173663 0.90770733 0.053411007 prediction 0.706570565093074 Functional Loss - PEA15 ENSG00000162734 CDS Human protein_coding chr1:160182970 chr1:160182974 synonymous SNV . 0 25 hm5C_associated_SNPs_50115 0 0 1 0 2 PEA15 chr1:160182900 3'AG 160182900 Downstream 75bp
chr1 160182974 160182974 1 + A C ACC 160182970 + 160182950 160182990 41 CTACTCACTATGGTGGTTGACTACAGAACCCGTGTGCTGAA CTACTCACTATGGTGGTTGACTACCGAACCCGTGTGCTGAA < 41bp 0.853285282546537 0.476315024173663 0.90770733 0.053411007 prediction 0.706570565093074 Functional Loss - PEA15 ENSG00000162734 CDS Human protein_coding chr1:160182970 chr1:160182974 synonymous SNV . 0 25 hm5C_associated_SNPs_50115 0 0 1 0 2 PEA15 chr1:160183055 5'GT 160183055 Upstream 82bp
chr7 120969820 120969820 1 + A C rs115876139 120969816 + 120969796 120969836 41 AACTGCATGATCACCGCCGCCGCCACTACCGCCCCGATGGG AACTGCATGATCACCGCCGCCGCCCCTACCGCCCCGATGGG < 41bp 0.877356499868396 0.524454553841161 0.7171085 0.35281843 prediction 0.70580389205447 Functional Loss - WNT16 ENSG00000002745 CDS Human protein_coding chr7:120969816 chr7:120969820 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_50118 0 0 0 0 1 WNT16 chr7:120969871 5'GT 120969871 Upstream 52bp
chrX 70514336 70514336 1 + A C UCS 70514332 + 70514312 70514352 41 TCTCAGGGAAGCCAGCTGCTCGGAAAGCTCTGGACAGATGC TCTCAGGGAAGCCAGCTGCTCGGACAGCTCTGGACAGATGC < 41bp 0.860095147479531 0.507246827676536 0.74554354 0.71718043 prediction 0.70569663960599 Functional Loss - NONO ENSG00000147140 CDS Human protein_coding chrX:70514332 chrX:70514336 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_50120 0 0 1 0 1 NONO chrX:70514378 5'GT 70514378 Upstream 43bp
chrX 70602911 70602911 1 + A C LUSC 70602907 + 70602887 70602927 41 ACATGGGGCCCATCAAACTCCGGCAGTTCCATCGCCCACCT ACATGGGGCCCATCAAACTCCGGCCGTTCCATCGCCCACCT < 41bp 0.852438014737787 0.497286301192726 0.911861 0.89945793 prediction 0.704876029475574 Functional Loss - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70602907 chrX:70602911 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_50123 0 0 1 0 1 TAF1 chrX:70602841 3'AG 70602841 Downstream 71bp
chr12 57910051 57910051 1 + A C LIHC 57910047 + 57910027 57910067 41 GGCAAAAACGTCCCCGAAGCCAGCAGTTGTAGAGACTGTTA GGCAAAAACGTCCCCGAAGCCAGCCGTTGTAGAGACTGTTA < 41bp 0.85194202423364 0.499664359750093 0.50988615 0.2058866 prediction 0.703884048467281 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57910047 chr12:57910051 synonymous SNV . 0 25 hm5C_associated_SNPs_50124 0 0 1 3 2 MARS chr12:57910028 3'AG 57910028 Downstream 24bp
chr12 57910051 57910051 1 + A C LIHC 57910047 + 57910027 57910067 41 GGCAAAAACGTCCCCGAAGCCAGCAGTTGTAGAGACTGTTA GGCAAAAACGTCCCCGAAGCCAGCCGTTGTAGAGACTGTTA < 41bp 0.85194202423364 0.499664359750093 0.50988615 0.2058866 prediction 0.703884048467281 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57910047 chr12:57910051 synonymous SNV . 0 25 hm5C_associated_SNPs_50124 0 0 1 3 2 MARS chr12:57910120 5'GT 57910120 Upstream 70bp
chr17 48539903 48539903 1 + A C rs202105387 48539899 + 48539879 48539919 41 TGGACCAGCTCCAATACAACCAGCAGTTCCTGTCCTGCCAT TGGACCAGCTCCAATACAACCAGCCGTTCCTGTCCTGCCAT < 41bp 0.87408333167986 0.522462467940517 0.90767574 0.87209547 prediction 0.703241727478687 Functional Loss - ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48539899 chr17:48539903 nonsynonymous SNV 0.961 0 25 hm5C_associated_SNPs_50126 0 0 1 0 1 ACSF2 chr17:48539946 5'GT 48539946 Upstream 44bp
chr17 40706500 40706500 1 + A C STAD 40706496 + 40706476 40706516 41 TGGGCAGCCCAGAGGAGGTGCTGGACCGCACGGACATCCAC TGGGCAGCCCAGAGGAGGTGCTGGCCCGCACGGACATCCAC < 41bp 0.8516169230653 0.499555078498544 0.78882015 0.55862623 prediction 0.7032338461306 Functional Loss - HSD17B1 ENSG00000108786 CDS Human protein_coding chr17:40706496 chr17:40706500 nonsynonymous SNV 0.008 1 25 hm5C_associated_SNPs_50127 0 0 0 0 1 HSD17B1 chr17:40706423 3'AG 40706423 Downstream 78bp
chr5 225597 225597 1 + A C UCEC 225593 + 225573 225613 41 AACTGGAGGTGGCATTTCTACGACACCGTGAAGGGCTCCGA AACTGGAGGTGGCATTTCTACGACCCCGTGAAGGGCTCCGA < 41bp 0.868889621913804 0.517407198029806 0.1883738 0.21741441 prediction 0.702964847767996 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:225593 chr5:225597 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_50128 0 0 1 0 2 SDHA chr5:225534 3'AG 225534 Downstream 64bp
chr5 225597 225597 1 + A C UCEC 225593 + 225573 225613 41 AACTGGAGGTGGCATTTCTACGACACCGTGAAGGGCTCCGA AACTGGAGGTGGCATTTCTACGACCCCGTGAAGGGCTCCGA < 41bp 0.868889621913804 0.517407198029806 0.1883738 0.21741441 prediction 0.702964847767996 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:225593 chr5:225597 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_50128 0 0 1 0 2 SDHA chr5:225677 5'GT 225677 Upstream 81bp
chr16 2571123 2571123 1 + A C GBM 2571119 + 2571099 2571139 41 CTTCCCCACCGGAGGTTTATCACAAGGTGAGGTGAGGCTCC CTTCCCCACCGGAGGTTTATCACACGGTGAGGTGAGGCTCC < 41bp 0.856767147830467 0.505451527797189 0.6615617 0.3735469 prediction 0.702631240066557 Functional Loss - AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2571119 chr16:2571123 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_50132 0 0 1 0 1 AMDHD2 chr16:2571124 5'GT 2571124 Upstream 2bp
chr11 20648296 20648296 1 + A C BLCA 20648292 + 20648272 20648312 41 ACGTTCCCGTATGTCGTACTCGTGATCCTCCTCATCCGAGG ACGTTCCCGTATGTCGTACTCGTGCTCCTCCTCATCCGAGG < 41bp 0.850933728379318 0.499411030694312 0.8574413 0.72860533 prediction 0.701867456758635 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20648292 chr11:20648296 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_50134 0 0 0 0 2 SLC6A5 chr11:20648254 3'AG 20648254 Downstream 43bp
chr11 20648296 20648296 1 + A C BLCA 20648292 + 20648272 20648312 41 ACGTTCCCGTATGTCGTACTCGTGATCCTCCTCATCCGAGG ACGTTCCCGTATGTCGTACTCGTGCTCCTCCTCATCCGAGG < 41bp 0.850933728379318 0.499411030694312 0.8574413 0.72860533 prediction 0.701867456758635 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20648292 chr11:20648296 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_50134 0 0 0 0 2 SLC6A5 chr11:20648388 5'GT 20648388 Upstream 93bp
chr14 20924919 20924919 1 + A C rs535864709 20924915 + 20924895 20924935 41 AGCTGAACTTCAGGAGCTGCCTGGACTCTCTCATCAATACT AGCTGAACTTCAGGAGCTGCCTGGCCTCTCTCATCAATACT < 41bp 0.850928297566241 0.481126779499829 0.05496314 0.16836467 prediction 0.701856595132481 Functional Loss - APEX1 ENSG00000100823 CDS Human protein_coding chr14:20924915 chr14:20924919 synonymous SNV . 0 25 hm5C_associated_SNPs_50135 0 0 1 0 1 APEX1 chr14:20924827 3'AG 20924827 Downstream 93bp
chr16 74336160 74336160 1 + A C GBM 74336156 + 74336136 74336176 41 GAAGGACCTAGGGCTGCCTACAGAAGCGTACATTTCAGTGG GAAGGACCTAGGGCTGCCTACAGACGCGTACATTTCAGTGG < 41bp 0.860795744861685 0.509960196486515 0.7815135 0.55114853 prediction 0.701671096750339 Functional Loss - PSMD7 ENSG00000103035 CDS Human protein_coding chr16:74336156 chr16:74336160 nonsynonymous SNV 0.974 1 25 hm5C_associated_SNPs_50136 0 0 1 0 2 PSMD7 chr16:74336110 3'AG 74336110 Downstream 51bp
chr16 74336160 74336160 1 + A C GBM 74336156 + 74336136 74336176 41 GAAGGACCTAGGGCTGCCTACAGAAGCGTACATTTCAGTGG GAAGGACCTAGGGCTGCCTACAGACGCGTACATTTCAGTGG < 41bp 0.860795744861685 0.509960196486515 0.7815135 0.55114853 prediction 0.701671096750339 Functional Loss - PSMD7 ENSG00000103035 CDS Human protein_coding chr16:74336156 chr16:74336160 nonsynonymous SNV 0.974 1 25 hm5C_associated_SNPs_50136 0 0 1 0 2 PSMD7 chr16:74336190 5'GT 74336190 Upstream 31bp
chr20 31811713 31811713 1 + G T UCEC 31811710 + 31811690 31811730 41 TGCCTCAGCACAAGTGGCCCCAGGGCTGGTGGGCTGGCTAA TGCCTCAGCACAAGTGGCCCCAGTGCTGGTGGGCTGGCTAA < 41bp 0.852543345836973 0.501740681336046 0.85338306 0.2871378 prediction 0.701605329001854 Functional Loss - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31811710 chr20:31811713 nonsynonymous SNV 0.838 4 24 hm5C_associated_SNPs_50137 0 0 0 0 2 BPIFA3 chr20:31811617 3'AG 31811617 Downstream 97bp
chr20 31811713 31811713 1 + G T UCEC 31811710 + 31811690 31811730 41 TGCCTCAGCACAAGTGGCCCCAGGGCTGGTGGGCTGGCTAA TGCCTCAGCACAAGTGGCCCCAGTGCTGGTGGGCTGGCTAA < 41bp 0.852543345836973 0.501740681336046 0.85338306 0.2871378 prediction 0.701605329001854 Functional Loss - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31811710 chr20:31811713 nonsynonymous SNV 0.838 4 24 hm5C_associated_SNPs_50137 0 0 0 0 2 BPIFA3 chr20:31811767 5'GT 31811767 Upstream 55bp
chr11 32608583 32608583 1 + A C UCEC 32608579 + 32608559 32608599 41 CTGCTGAGCTTCGTGCTTATCTGAAATCTAAAGGAGCTGAG CTGCTGAGCTTCGTGCTTATCTGACATCTAAAGGAGCTGAG < 41bp 0.853408500374899 0.50277107795973 0.22628078 0.17607749 prediction 0.701274844830339 Functional Loss - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32608579 chr11:32608583 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_50138 0 0 1 0 1 EIF3M chr11:32608558 3'AG 32608558 Downstream 26bp
chr2 26676352 26676352 1 + G T LUAD 26676349 + 26676329 26676369 41 GAGGAGACCCCACCCTCCCCCTGGGTCATCCACCCCAATGA GAGGAGACCCCACCCTCCCCCTGTGTCATCCACCCCAATGA < 41bp 0.857531132791895 0.5071197880694 0.725158 0.08032 prediction 0.700822689444991 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26676349 chr2:26676352 nonsynonymous SNV 0.061 0 24 hm5C_associated_SNPs_50139 0 0 0 0 1 DRC1 chr2:26676417 5'GT 26676417 Upstream 66bp
chr3 88202563 88202563 1 + A C UCEC 88202559 + 88202539 88202579 41 ACTGGCAAAAGCAACCACAACTGAAATTGAAGGAAACGCCA ACTGGCAAAAGCAACCACAACTGACATTGAAGGAAACGCCA < 41bp 0.850404398281901 0.47966284406188 0.3550615 0.13842449 prediction 0.700808796563803 Functional Loss - C3orf38 ENSG00000179021 CDS Human protein_coding chr3:88202559 chr3:88202563 nonsynonymous SNV 0.989 0 25 hm5C_associated_SNPs_50140 0 0 1 0 1 C3orf38 chr3:88202621 5'GT 88202621 Upstream 59bp
chr3 183824002 183824002 1 + A C OV 183823998 + 183823978 183824018 41 ACCCACCTGCTGCACGTGGCCACCACCCAGCCCCCACCCCT ACCCACCTGCTGCACGTGGCCACCCCCCAGCCCCCACCCCT < 41bp 0.870238620380509 0.519994523124219 0.017813295 0.03320554 prediction 0.700488194512581 Functional Loss - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183823998 chr3:183824002 nonsynonymous SNV 0.651 3 25 hm5C_associated_SNPs_50141 0 0 0 0 1 HTR3E chr3:183823916 3'AG 183823916 Downstream 87bp
chr8 142441122 142441122 1 + A C UCEC 142441118 + 142441098 142441138 41 GGTTCAAAGACCCACACACGCACAAGACCCGGTGCTGCGTT GGTTCAAAGACCCACACACGCACACGACCCGGTGCTGCGTT < 41bp 0.859846889181997 0.509696380584595 0.21061182 0.08424088 prediction 0.700301017194803 Functional Loss - PTP4A3 ENSG00000184489 CDS Human protein_coding chr8:142441118 chr8:142441122 nonsynonymous SNV 0.914 2 25 hm5C_associated_SNPs_50142 0 0 0 0 1 PTP4A3 chr8:142441027 3'AG 142441027 Downstream 96bp
chr17 76060954 76060954 1 + A C rs61730171 76060950 + 76060930 76060970 41 CAGCGGGTGGGGAGATCACCCTGCAGAGCCGCCGGTGGCAT CAGCGGGTGGGGAGATCACCCTGCCGAGCCGCCGGTGGCAT < 41bp 0.850047398784019 0.474471394701667 0.4991662 0.6217124 prediction 0.700094797568039 Functional Loss - TNRC6C ENSG00000078687 CDS Human protein_coding chr17:76060950 chr17:76060954 synonymous SNV . 0 25 hm5C_associated_SNPs_50143 0 0 1 0 1 TNRC6C chr17:76061018 5'GT 76061018 Upstream 65bp
chr5 148702174 148702174 1 + G T UCEC 148702171 + 148702151 148702191 41 TCCTCCATCTCCCACCAGGACGAGGAGCCCGAGCGCCCCAC TCCTCCATCTCCCACCAGGACGATGAGCCCGAGCGCCCCAC < 41bp 0.84999407938848 0.494572600856205 0.8333844 0.3339394 prediction 0.699988158776961 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148702171 chr5:148702174 nonsynonymous SNV 0.409 1 24 hm5C_associated_SNPs_50145 0 0 0 0 1 AFAP1L1 chr5:148702169 3'AG 148702169 Downstream 6bp
chr3 45714197 45714197 1 + G T BLCA 45714194 + 45714174 45714214 41 TGCTCCAGATCCTGCAAGCCCTGGGGAAGTCCTACCACCCC TGCTCCAGATCCTGCAAGCCCTGTGGAAGTCCTACCACCCC < 41bp 0.855598086714895 0.505637089164304 0.8989835 0.7192729 prediction 0.699921995101182 Functional Loss - LIMD1 ENSG00000144791 CDS Human protein_coding chr3:45714194 chr3:45714197 nonsynonymous SNV 0.988 5 24 hm5C_associated_SNPs_50146 0 0 1 0 1 LIMD1 chr3:45714182 3'AG 45714182 Downstream 16bp
chr22 35785917 35785917 1 + G T THYM 35785914 + 35785894 35785934 41 CCAAGGACCAGAGCCCCTCACGGGCACCAGGGCTTCGCCAG CCAAGGACCAGAGCCCCTCACGGTCACCAGGGCTTCGCCAG < 41bp 0.858092593359555 0.508246627660115 0.90710104 0.754697 prediction 0.699691931398881 Functional Loss - HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35785914 chr22:35785917 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_50148 0 0 1 0 2 HMOX1 chr22:35785857 3'AG 35785857 Downstream 61bp
chr22 35785917 35785917 1 + G T THYM 35785914 + 35785894 35785934 41 CCAAGGACCAGAGCCCCTCACGGGCACCAGGGCTTCGCCAG CCAAGGACCAGAGCCCCTCACGGTCACCAGGGCTTCGCCAG < 41bp 0.858092593359555 0.508246627660115 0.90710104 0.754697 prediction 0.699691931398881 Functional Loss - HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35785914 chr22:35785917 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_50148 0 0 1 0 2 HMOX1 chr22:35785956 5'GT 35785956 Upstream 40bp
chr8 67066494 67066494 1 + A C UCEC 67066490 + 67066470 67066510 41 GGATTCGAATGTACGGAAGGCAGAAGTGGCAGCAGCCGCAG GGATTCGAATGTACGGAAGGCAGACGTGGCAGCAGCCGCAG < 41bp 0.850598662937813 0.500845170146171 0.6670382 0.47322953 prediction 0.699506985583284 Functional Loss - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67066490 chr8:67066494 nonsynonymous SNV 0.977 0 25 hm5C_associated_SNPs_50150 0 0 0 0 1 TRIM55 chr8:67066569 5'GT 67066569 Upstream 76bp
chr17 35297912 35297912 1 + A C KIRP 35297908 + 35297888 35297928 41 TCTGTCCTTTCCCTCTTAGCCACCACGGGCAGTGACCCCAG TCTGTCCTTTCCCTCTTAGCCACCCCGGGCAGTGACCCCAG < 41bp 0.87783278439373 0.528122849894465 0.061849743 0.08667165 prediction 0.699419868998531 Functional Loss - LHX1 ENSG00000132130 CDS Human other chr17:35297908 chr17:35297912 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_50152 0 0 0 0 1 LHX1 chr17:35297907 3'AG 35297907 Downstream 6bp
chr7 128366916 128366916 1 + A C STAD 128366912 + 128366892 128366932 41 AGCAGAAAGGTGGAGACCAACAAGAACAGCTCAGGTAAGGG AGCAGAAAGGTGGAGACCAACAAGCACAGCTCAGGTAAGGG < 41bp 0.849610291080962 0.495502285908978 0.85954285 0.5497476 prediction 0.699220582161923 Functional Loss - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128366912 chr7:128366916 nonsynonymous SNV 0.029 0 25 hm5C_associated_SNPs_50156 0 0 0 2 2 FAM71F1 chr7:128366882 3'AG 128366882 Downstream 35bp
chr7 128366916 128366916 1 + A C STAD 128366912 + 128366892 128366932 41 AGCAGAAAGGTGGAGACCAACAAGAACAGCTCAGGTAAGGG AGCAGAAAGGTGGAGACCAACAAGCACAGCTCAGGTAAGGG < 41bp 0.849610291080962 0.495502285908978 0.85954285 0.5497476 prediction 0.699220582161923 Functional Loss - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128366912 chr7:128366916 nonsynonymous SNV 0.029 0 25 hm5C_associated_SNPs_50156 0 0 0 2 2 FAM71F1 chr7:128366888 3'AG 128366888 Downstream 29bp
chr9 34506780 34506780 1 + A C LUSC 34506776 + 34506756 34506796 41 GTGGCAGTAGGCCACTATGACGGCAACGTGGCCATTTACAA GTGGCAGTAGGCCACTATGACGGCCACGTGGCCATTTACAA < 41bp 0.874506413932813 0.524921086632935 0.49775115 0.39846683 prediction 0.699170654599756 Functional Loss - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34506776 chr9:34506780 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_50157 0 0 0 0 1 DNAI1 chr9:34506872 5'GT 34506872 Upstream 93bp
chr17 56274525 56274525 1 + G T UCEC 56274522 + 56274502 56274542 41 TGGCCATCAACCAGCGCTTTCAAGACAACGGCCGGGCCCTG TGGCCATCAACCAGCGCTTTCAATACAACGGCCGGGCCCTG < 41bp 0.85684938745359 0.507289272423015 0.6389665 0.30818498 prediction 0.699120230061152 Functional Loss - EPX ENSG00000121053 CDS Human protein_coding chr17:56274522 chr17:56274525 nonsynonymous SNV 0.074 4 24 hm5C_associated_SNPs_50158 0 0 0 0 1 EPX chr17:56274618 5'GT 56274618 Upstream 94bp
chr9 91961856 91961856 1 + A C COAD 91961852 + 91961832 91961872 41 TCAGGGGAGAGAGGCCGCCGCATGAGTCAAATGAAGACCCC TCAGGGGAGAGAGGCCGCCGCATGCGTCAAATGAAGACCCC < 41bp 0.85572112953695 0.50643312350983 0.24937141 0.21318987 prediction 0.698576012054239 Functional Loss - SECISBP2 ENSG00000187742 CDS Human protein_coding chr9:91961852 chr9:91961856 nonsynonymous SNV 0.047 1 25 hm5C_associated_SNPs_50160 0 0 1 0 1 SECISBP2 chr9:91961797 3'AG 91961797 Downstream 60bp
chr3 14485210 14485210 1 + G T CESC 14485207 + 14485187 14485227 41 GGACATCCTGAAGCCCTCACCAGGGAAGAGCCCAGGCACGC GGACATCCTGAAGCCCTCACCAGTGAAGAGCCCAGGCACGC < 41bp 0.851942197370385 0.502667176728099 0.8896055 0.28255165 prediction 0.698550041284573 Functional Loss - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14485207 chr3:14485210 nonsynonymous SNV 0.984 1 24 hm5C_associated_SNPs_50161 0 0 1 0 2 SLC6A6 chr3:14485132 3'AG 14485132 Downstream 79bp
chr3 14485210 14485210 1 + G T CESC 14485207 + 14485187 14485227 41 GGACATCCTGAAGCCCTCACCAGGGAAGAGCCCAGGCACGC GGACATCCTGAAGCCCTCACCAGTGAAGAGCCCAGGCACGC < 41bp 0.851942197370385 0.502667176728099 0.8896055 0.28255165 prediction 0.698550041284573 Functional Loss - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14485207 chr3:14485210 nonsynonymous SNV 0.984 1 24 hm5C_associated_SNPs_50161 0 0 1 0 2 SLC6A6 chr3:14485136 3'AG 14485136 Downstream 75bp
chr3 196386694 196386694 1 + G T BRCA 196386691 + 196386671 196386711 41 AGCAGCCTCCCGCCCCACGCCCGGATGCTCACCCTGGATGC AGCAGCCTCCCGCCCCACGCCCGTATGCTCACCCTGGATGC < 41bp 0.851405328846688 0.502208163594602 0.89382386 0.1976963 prediction 0.698394330504171 Functional Loss - NRROS ENSG00000174004 CDS Human protein_coding chr3:196386691 chr3:196386694 synonymous SNV . 0 24 hm5C_associated_SNPs_50163 0 0 0 0 1 NRROS chr3:196386623 3'AG 196386623 Downstream 72bp
chr3 38315785 38315785 1 + A C COAD 38315781 + 38315761 38315801 41 AGTTCAACCTGGTTTGTGATCGGAAGCACCTGAAGGACACC AGTTCAACCTGGTTTGTGATCGGACGCACCTGAAGGACACC < 41bp 0.85479114104391 0.505910816740607 0.9089595 0.9108968 prediction 0.697760648606606 Functional Loss - SLC22A13 ENSG00000172940 CDS Human protein_coding chr3:38315781 chr3:38315785 nonsynonymous SNV 0.988 1 25 hm5C_associated_SNPs_50166 0 0 0 0 2 SLC22A13 chr3:38315763 3'AG 38315763 Downstream 23bp
chr3 38315785 38315785 1 + A C COAD 38315781 + 38315761 38315801 41 AGTTCAACCTGGTTTGTGATCGGAAGCACCTGAAGGACACC AGTTCAACCTGGTTTGTGATCGGACGCACCTGAAGGACACC < 41bp 0.85479114104391 0.505910816740607 0.9089595 0.9108968 prediction 0.697760648606606 Functional Loss - SLC22A13 ENSG00000172940 CDS Human protein_coding chr3:38315781 chr3:38315785 nonsynonymous SNV 0.988 1 25 hm5C_associated_SNPs_50166 0 0 0 0 2 SLC22A13 chr3:38315866 5'GT 38315866 Upstream 82bp
chr14 76964593 76964593 1 + A C LUSC 76964589 + 76964569 76964609 41 TCGAGGATCTAGAGGCTGTCCAGAAGCTGCAGGACCTGCTG TCGAGGATCTAGAGGCTGTCCAGACGCTGCAGGACCTGCTG < 41bp 0.848863285207032 0.496488659102468 0.796069 0.6404163 prediction 0.697726570414063 Functional Loss - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76964589 chr14:76964593 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_50167 0 0 1 0 1 ESRRB chr14:76964557 3'AG 76964557 Downstream 37bp
chrX 153421961 153421961 1 + A C SKCM 153421957 + 153421937 153421977 41 GCCCTGCCGGCCTACTTTGCCAAAAGTGCCACTATCTACAA GCCCTGCCGGCCTACTTTGCCAAACGTGCCACTATCTACAA < 41bp 0.848755180932435 0.490565081235637 0.93641675 0.9511863 prediction 0.69751036186487 Functional Loss - OPN1LW ENSG00000102076 CDS Human protein_coding chrX:153421957 chrX:153421961 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_50168 0 0 0 0 1 OPN1LW chrX:153422008 5'GT 153422008 Upstream 48bp
chr1 247607342 247607342 1 + A C UCEC 247607338 + 247607318 247607358 41 CCTCGGTACTCAGCACTAATCAGAATCTCACGCACCTTTAC CCTCGGTACTCAGCACTAATCAGACTCTCACGCACCTTTAC < 41bp 0.859176312405684 0.510455169440162 0.9457865 0.94266737 prediction 0.697442285931044 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247607338 chr1:247607342 nonsynonymous SNV 0.019 0 25 hm5C_associated_SNPs_50170 0 0 0 0 1 NLRP3 chr1:247607274 3'AG 247607274 Downstream 69bp
chr21 43711704 43711704 1 + A C KIRC 43711700 + 43711680 43711720 41 GTGCTGTTTGCCGCGCTGGGCACCATGACCTCCCTGGTGGC GTGCTGTTTGCCGCGCTGGGCACCCTGACCTCCCTGGTGGC < 41bp 0.848643491910543 0.48524340398769 0.11192089 0.044217825 prediction 0.697286983821086 Functional Loss - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43711700 chr21:43711704 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_50172 0 0 0 0 2 ABCG1 chr21:43711608 3'AG 43711608 Downstream 97bp
chr21 43711704 43711704 1 + A C KIRC 43711700 + 43711680 43711720 41 GTGCTGTTTGCCGCGCTGGGCACCATGACCTCCCTGGTGGC GTGCTGTTTGCCGCGCTGGGCACCCTGACCTCCCTGGTGGC < 41bp 0.848643491910543 0.48524340398769 0.11192089 0.044217825 prediction 0.697286983821086 Functional Loss - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43711700 chr21:43711704 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_50172 0 0 0 0 2 ABCG1 chr21:43711766 5'GT 43711766 Upstream 63bp
chr12 3701486 3701486 1 + A C OV 3701482 + 3701462 3701502 41 CGGAGGGGGGAGGAAATCTACGGGACCATATCCATGAAGCC CGGAGGGGGGAGGAAATCTACGGGCCCATATCCATGAAGCC < 41bp 0.857741009327406 0.50914781759371 0.73413944 0.7963081 prediction 0.697186383467391 Functional Loss - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3701482 chr12:3701486 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_50173 0 0 0 2 2 PRMT8 chr12:3701397 3'AG 3701397 Downstream 90bp
chr12 3701486 3701486 1 + A C OV 3701482 + 3701462 3701502 41 CGGAGGGGGGAGGAAATCTACGGGACCATATCCATGAAGCC CGGAGGGGGGAGGAAATCTACGGGCCCATATCCATGAAGCC < 41bp 0.857741009327406 0.50914781759371 0.73413944 0.7963081 prediction 0.697186383467391 Functional Loss - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3701482 chr12:3701486 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_50173 0 0 0 2 2 PRMT8 chr12:3701518 5'GT 3701518 Upstream 33bp
chr19 36611662 36611662 1 + G T LUSC 36611659 + 36611639 36611679 41 GGTGAGTATGAGGACGTGTCCCGGGTGGAGAAGTACACGAT GGTGAGTATGAGGACGTGTCCCGTGTGGAGAAGTACACGAT < 41bp 0.852693715719943 0.504273728286787 0.9177927 0.37727588 prediction 0.696839974866311 Functional Loss - TBCB ENSG00000105254 CDS Human protein_coding chr19:36611659 chr19:36611662 synonymous SNV . 0 24 hm5C_associated_SNPs_50176 0 0 1 0 2 TBCB chr19:36611612 3'AG 36611612 Downstream 51bp
chr19 36611662 36611662 1 + G T LUSC 36611659 + 36611639 36611679 41 GGTGAGTATGAGGACGTGTCCCGGGTGGAGAAGTACACGAT GGTGAGTATGAGGACGTGTCCCGTGTGGAGAAGTACACGAT < 41bp 0.852693715719943 0.504273728286787 0.9177927 0.37727588 prediction 0.696839974866311 Functional Loss - TBCB ENSG00000105254 CDS Human protein_coding chr19:36611659 chr19:36611662 synonymous SNV . 0 24 hm5C_associated_SNPs_50176 0 0 1 0 2 TBCB chr19:36611708 5'GT 36611708 Upstream 47bp
chr1 156618653 156618653 1 + G T STAD 156618650 + 156618630 156618670 41 GCTTCAACGTCTACTGCTTCCGAGGTGAGCCCACCTCCCTG GCTTCAACGTCTACTGCTTCCGATGTGAGCCCACCTCCCTG < 41bp 0.848281738457995 0.49429351161756 0.8792001 0.22425443 prediction 0.69656347691599 Functional Loss - BCAN ENSG00000132692 CDS Human protein_coding chr1:156618650 chr1:156618653 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_50177 0 0 0 0 1 BCAN chr1:156618653 5'GT 156618653 Upstream 1bp
chr14 23237290 23237290 1 + G T LIHC 23237287 + 23237267 23237307 41 AGAGCTTCGCTGAACTGGGGCTGGGGTCATACACCCCAGTG AGAGCTTCGCTGAACTGGGGCTGTGGTCATACACCCCAGTG < 41bp 0.861072091678046 0.51301891692383 0.8244276 0.33725524 prediction 0.696106349508432 Functional Loss - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23237287 chr14:23237290 nonsynonymous SNV 0.956 4 24 hm5C_associated_SNPs_50180 0 0 1 0 1 OXA1L chr14:23237380 5'GT 23237380 Upstream 91bp
chr1 38027737 38027737 1 + A C rs138550216 38027733 + 38027713 38027753 41 TGGAGAGGCAAGTGAACGAGCAGAAGGCAAAATGTGAAGCC TGGAGAGGCAAGTGAACGAGCAGACGGCAAAATGTGAAGCC < 41bp 0.859524595526691 0.511569018880754 0.3664552 0.3379594 prediction 0.695911153291874 Functional Loss - DNALI1 ENSG00000163879 CDS Human protein_coding chr1:38027733 chr1:38027737 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_50184 0 0 0 2 1 DNALI1 chr1:38027682 3'AG 38027682 Downstream 56bp
chr5 5318335 5318335 1 + A C rs114190883 5318331 + 5318311 5318351 41 CGGCCTCAGGCTGCCTCCTGCACCAGAAGCCTTCGGCCTCC CGGCCTCAGGCTGCCTCCTGCACCCGAAGCCTTCGGCCTCC < 41bp 0.847930227580676 0.476680102553101 0.7919043 0.66982824 prediction 0.695860455161352 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5318331 chr5:5318335 nonsynonymous SNV 0.564 2 25 hm5C_associated_SNPs_50185 0 0 0 0 2 ADAMTS16 chr5:5318247 3'AG 5318247 Downstream 89bp
chr5 5318335 5318335 1 + A C rs114190883 5318331 + 5318311 5318351 41 CGGCCTCAGGCTGCCTCCTGCACCAGAAGCCTTCGGCCTCC CGGCCTCAGGCTGCCTCCTGCACCCGAAGCCTTCGGCCTCC < 41bp 0.847930227580676 0.476680102553101 0.7919043 0.66982824 prediction 0.695860455161352 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5318331 chr5:5318335 nonsynonymous SNV 0.564 2 25 hm5C_associated_SNPs_50185 0 0 0 0 2 ADAMTS16 chr5:5318394 5'GT 5318394 Upstream 60bp
chr11 64802344 64802344 1 + G T UCEC 64802341 + 64802321 64802361 41 CGGTTTGAAGCCTCAGTGATCGAGGAGCGGCGAAAGGGGGC CGGTTTGAAGCCTCAGTGATCGATGAGCGGCGAAAGGGGGC < 41bp 0.855329624065357 0.507454962451543 0.9300753 0.7529925 prediction 0.695749323227629 Functional Loss - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802341 chr11:64802344 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_50186 0 0 1 0 2 SNX15 chr11:64802319 3'AG 64802319 Downstream 26bp
chr11 64802344 64802344 1 + G T UCEC 64802341 + 64802321 64802361 41 CGGTTTGAAGCCTCAGTGATCGAGGAGCGGCGAAAGGGGGC CGGTTTGAAGCCTCAGTGATCGATGAGCGGCGAAAGGGGGC < 41bp 0.855329624065357 0.507454962451543 0.9300753 0.7529925 prediction 0.695749323227629 Functional Loss - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802341 chr11:64802344 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_50186 0 0 1 0 2 SNX15 chr11:64802434 5'GT 64802434 Upstream 91bp
chr1 26357001 26357001 1 + G T LUAD 26356998 + 26356978 26357018 41 CCTCCAGGAGATGTCCCCTGCACGGGTCCTCGCCCTGCGTC CCTCCAGGAGATGTCCCCTGCACTGGTCCTCGCCCTGCGTC < 41bp 0.857645785821646 0.509807884325036 0.65057063 0.17036146 prediction 0.69567580299322 Functional Loss - EXTL1 ENSG00000158008 CDS Human protein_coding chr1:26356998 chr1:26357001 nonsynonymous SNV 0.882 3 24 hm5C_associated_SNPs_50188 0 0 0 0 2 EXTL1 chr1:26356967 3'AG 26356967 Downstream 35bp
chr1 26357001 26357001 1 + G T LUAD 26356998 + 26356978 26357018 41 CCTCCAGGAGATGTCCCCTGCACGGGTCCTCGCCCTGCGTC CCTCCAGGAGATGTCCCCTGCACTGGTCCTCGCCCTGCGTC < 41bp 0.857645785821646 0.509807884325036 0.65057063 0.17036146 prediction 0.69567580299322 Functional Loss - EXTL1 ENSG00000158008 CDS Human protein_coding chr1:26356998 chr1:26357001 nonsynonymous SNV 0.882 3 24 hm5C_associated_SNPs_50188 0 0 0 0 2 EXTL1 chr1:26357086 5'GT 26357086 Upstream 86bp
chr20 5903072 5903072 1 + A C STAD 5903068 + 5903048 5903088 41 AAGAGACCCAGCTGATGCCTCGGAAGCCCACGAGTCCTCCA AAGAGACCCAGCTGATGCCTCGGACGCCCACGAGTCCTCCA < 41bp 0.847810636491002 0.496764209549102 0.80177206 0.4826267 prediction 0.695621272982004 Functional Loss - CHGB ENSG00000089199 CDS Human protein_coding chr20:5903068 chr20:5903072 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_50190 0 0 0 0 1 CHGB chr20:5902981 3'AG 5902981 Downstream 92bp
chr16 50136229 50136229 1 + A C UCEC 50136225 + 50136205 50136245 41 AGATCCTTCCCTTGTGGTAGCAGGAGAAGCTTTGGATGCCC AGATCCTTCCCTTGTGGTAGCAGGCGAAGCTTTGGATGCCC < 41bp 0.852274028182342 0.504555997234746 0.92612517 0.90976506 prediction 0.695436061895193 Functional Loss - HEATR3 ENSG00000155393 CDS Human protein_coding chr16:50136225 chr16:50136229 synonymous SNV . 0 25 hm5C_associated_SNPs_50191 0 0 1 0 1 HEATR3 chr16:50136170 3'AG 50136170 Downstream 60bp
chr3 136701065 136701065 1 + A C STAD 136701061 + 136701041 136701081 41 CAGCAGCTGGTGCTCACTCACTGAAGGTCCTGAGTGTGATG CAGCAGCTGGTGCTCACTCACTGACGGTCCTGAGTGTGATG < 41bp 0.847711529742508 0.471540215892397 0.2933557 0.09994626 prediction 0.695423059485017 Functional Loss - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136701061 chr3:136701065 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_50192 0 0 0 1 1 IL20RB chr3:136701002 3'AG 136701002 Downstream 64bp
chr1 111781499 111781499 1 + G T SARC 111781496 + 111781476 111781516 41 CACCGTGGGGGCCCCTGCCTCTGGCCCTGGAGCTGCTGGAC CACCGTGGGGGCCCCTGCCTCTGTCCCTGGAGCTGCTGGAC < 41bp 0.847709158762788 0.498938874241319 0.8286394 0.46361342 prediction 0.695418317525575 Functional Loss - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111781496 chr1:111781499 nonsynonymous SNV 0.985 3 24 hm5C_associated_SNPs_50193 0 0 0 0 1 CHI3L2 chr1:111781554 5'GT 111781554 Upstream 56bp
chr16 85946788 85946788 1 + G T LUAD 85946785 + 85946765 85946805 41 TCAAAAGGAGCCCTTCCCCGCCGGAGGCCTGTCGGAGTCAG TCAAAAGGAGCCCTTCCCCGCCGTAGGCCTGTCGGAGTCAG < 41bp 0.854486406999831 0.507041637955769 0.47242782 0.25293082 prediction 0.694889538088124 Functional Loss - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85946785 chr16:85946788 stopgain 0.921 0 24 hm5C_associated_SNPs_50201 0 0 0 0 2 IRF8 chr16:85946737 3'AG 85946737 Downstream 52bp
chr16 85946788 85946788 1 + G T LUAD 85946785 + 85946765 85946805 41 TCAAAAGGAGCCCTTCCCCGCCGGAGGCCTGTCGGAGTCAG TCAAAAGGAGCCCTTCCCCGCCGTAGGCCTGTCGGAGTCAG < 41bp 0.854486406999831 0.507041637955769 0.47242782 0.25293082 prediction 0.694889538088124 Functional Loss - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85946785 chr16:85946788 stopgain 0.921 0 24 hm5C_associated_SNPs_50201 0 0 0 0 2 IRF8 chr16:85946842 5'GT 85946842 Upstream 55bp
chr8 21959251 21959251 1 + G T UCEC 21959248 + 21959228 21959268 41 TGCAGCTCCCGCGTCGCCTCCTGGGGCTGGCCTCTGACCCC TGCAGCTCCCGCGTCGCCTCCTGTGGCTGGCCTCTGACCCC < 41bp 0.847436328377823 0.485710593091594 0.8190359 0.07674289 prediction 0.694872656755646 Functional Loss - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21959248 chr8:21959251 nonsynonymous SNV 0.598 4 24 hm5C_associated_SNPs_50202 0 0 1 0 1 FAM160B2 chr8:21959219 3'AG 21959219 Downstream 33bp
chrX 47039407 47039407 1 + G T LUSC 47039404 + 47039384 47039424 41 ACAAGCAGACCCAACTGAACCGCGGCTTTGCCTTCATCCAG ACAAGCAGACCCAACTGAACCGCTGCTTTGCCTTCATCCAG < 41bp 0.848021658098626 0.500589048286384 0.32276404 0.053966224 prediction 0.694865219624484 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47039404 chrX:47039407 nonsynonymous SNV 0.938 4 24 hm5C_associated_SNPs_50203 0 0 1 0 2 RBM10 chrX:47039436 5'GT 47039436 Upstream 30bp
chrX 47039407 47039407 1 + G T LUSC 47039404 + 47039384 47039424 41 ACAAGCAGACCCAACTGAACCGCGGCTTTGCCTTCATCCAG ACAAGCAGACCCAACTGAACCGCTGCTTTGCCTTCATCCAG < 41bp 0.848021658098626 0.500589048286384 0.32276404 0.053966224 prediction 0.694865219624484 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47039404 chrX:47039407 nonsynonymous SNV 0.938 4 24 hm5C_associated_SNPs_50203 0 0 1 0 2 RBM10 chrX:47039439 5'GT 47039439 Upstream 33bp
chr19 1049416 1049416 1 + G T HNSC 1049413 + 1049393 1049433 41 ACCGCCTTCCTGGGCCACAACGGGGCCGGCAAGACCACCAC ACCGCCTTCCTGGGCCACAACGGTGCCGGCAAGACCACCAC < 41bp 0.847423108602696 0.499281930443701 0.9466335 0.7514856 prediction 0.694846217205392 Functional Loss - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1049413 chr19:1049416 synonymous SNV . 0 24 hm5C_associated_SNPs_50204 0 0 0 0 1 ABCA7 chr19:1049436 5'GT 1049436 Upstream 21bp
chr12 64879736 64879736 1 + A C LUSC 64879732 + 64879712 64879752 41 ACAGGGGTTGTGTGTTATGCCTGCAGAATTGCCAGTACCTT ACAGGGGTTGTGTGTTATGCCTGCCGAATTGCCAGTACCTT < 41bp 0.847396764946286 0.48407217351613 0.12375343 0.029556692 prediction 0.694793529892572 Functional Loss - TBK1 ENSG00000183735 CDS Human protein_coding chr12:64879732 chr12:64879736 synonymous SNV . 0 25 hm5C_associated_SNPs_50205 0 0 1 0 2 TBK1 chr12:64879706 3'AG 64879706 Downstream 31bp
chr12 64879736 64879736 1 + A C LUSC 64879732 + 64879712 64879752 41 ACAGGGGTTGTGTGTTATGCCTGCAGAATTGCCAGTACCTT ACAGGGGTTGTGTGTTATGCCTGCCGAATTGCCAGTACCTT < 41bp 0.847396764946286 0.48407217351613 0.12375343 0.029556692 prediction 0.694793529892572 Functional Loss - TBK1 ENSG00000183735 CDS Human protein_coding chr12:64879732 chr12:64879736 synonymous SNV . 0 25 hm5C_associated_SNPs_50205 0 0 1 0 2 TBK1 chr12:64879797 5'GT 64879797 Upstream 62bp
chr1 156348152 156348152 1 + A C UCEC 156348148 + 156348128 156348168 41 AGCTGGAGAAGAGCAAGCACCGCCAGGGCTCCGTCTACCAT AGCTGGAGAAGAGCAAGCACCGCCCGGGCTCCGTCTACCAT < 41bp 0.879013614305683 0.531650058766396 0.2538256 0.09595212 prediction 0.694727111078574 Functional Loss - RHBG ENSG00000132677 CDS Human protein_coding chr1:156348148 chr1:156348152 nonsynonymous SNV 0.989 0 25 hm5C_associated_SNPs_50208 0 0 1 1 2 RHBG chr1:156348190 5'GT 156348190 Upstream 39bp
chr1 156348152 156348152 1 + A C UCEC 156348148 + 156348128 156348168 41 AGCTGGAGAAGAGCAAGCACCGCCAGGGCTCCGTCTACCAT AGCTGGAGAAGAGCAAGCACCGCCCGGGCTCCGTCTACCAT < 41bp 0.879013614305683 0.531650058766396 0.2538256 0.09595212 prediction 0.694727111078574 Functional Loss - RHBG ENSG00000132677 CDS Human protein_coding chr1:156348148 chr1:156348152 nonsynonymous SNV 0.989 0 25 hm5C_associated_SNPs_50208 0 0 1 1 2 RHBG chr1:156348204 5'GT 156348204 Upstream 53bp
chr17 76130988 76130988 1 + G T LUAD 76130985 + 76130965 76131005 41 GCTGCTCCAGTACCTGCCCCCTGGGGTCATCGCCCTGGTCA GCTGCTCCAGTACCTGCCCCCTGTGGTCATCGCCCTGGTCA < 41bp 0.847282520049435 0.483506779069028 0.45869637 0.059697747 prediction 0.694565040098871 Functional Loss - TMC8 ENSG00000167895 CDS Human protein_coding chr17:76130985 chr17:76130988 nonsynonymous SNV 0.977 1 24 hm5C_associated_SNPs_50210 0 0 0 0 1 TMC8 chr17:76130951 3'AG 76130951 Downstream 38bp
chr1 155019710 155019710 1 + A C rs11264300 155019706 + 155019686 155019726 41 GAGGTGAAGGTCGGGGGAGACTCCATGCTAGCCCGGCTTCT GAGGTGAAGGTCGGGGGAGACTCCCTGCTAGCCCGGCTTCT < 41bp 0.847141628125781 0.460268432686198 0.9611397 0.33181423 prediction 0.694283256251562 Functional Loss - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155019706 chr1:155019710 nonsynonymous SNV 0.941 0 25 hm5C_associated_SNPs_50213 0 0 0 0 2 DCST1 chr1:155019672 3'AG 155019672 Downstream 39bp
chr1 155019710 155019710 1 + A C rs11264300 155019706 + 155019686 155019726 41 GAGGTGAAGGTCGGGGGAGACTCCATGCTAGCCCGGCTTCT GAGGTGAAGGTCGGGGGAGACTCCCTGCTAGCCCGGCTTCT < 41bp 0.847141628125781 0.460268432686198 0.9611397 0.33181423 prediction 0.694283256251562 Functional Loss - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155019706 chr1:155019710 nonsynonymous SNV 0.941 0 25 hm5C_associated_SNPs_50213 0 0 0 0 2 DCST1 chr1:155019788 5'GT 155019788 Upstream 79bp
chr11 63960753 63960753 1 + G T LUAD 63960750 + 63960730 63960770 41 ACTGTCGACCTAAAGCCTGACTGGGGCAAGGTCAGCTGTGG ACTGTCGACCTAAAGCCTGACTGTGGCAAGGTCAGCTGTGG < 41bp 0.847206409934576 0.500083385020537 0.51412374 0.114049315 prediction 0.694246049828077 Functional Loss - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63960750 chr11:63960753 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50214 0 0 1 0 1 STIP1 chr11:63960759 5'GT 63960759 Upstream 7bp
chr3 100170657 100170657 1 + A C LUSC 100170653 + 100170633 100170673 41 TTCGATGCCGTAGCCACGTACGGGATTACAGAAAATACTCA TTCGATGCCGTAGCCACGTACGGGCTTACAGAAAATACTCA < 41bp 0.853946396937632 0.506830797472665 0.89764977 0.88415265 prediction 0.694231198929934 Functional Loss - LNP1 ENSG00000206535 CDS Human protein_coding chr3:100170653 chr3:100170657 nonsynonymous SNV 0.028 0 25 hm5C_associated_SNPs_50215 0 0 0 1 1 LNP1 chr3:100170563 3'AG 100170563 Downstream 95bp
chr9 100071729 100071729 1 + A C BLCA 100071725 + 100071705 100071745 41 GTCCACTCCCTGGCGGCCACCAGGAAGCGGGCTGCAGAGCG GTCCACTCCCTGGCGGCCACCAGGCAGCGGGCTGCAGAGCG < 41bp 0.847082167183015 0.496523140698961 0.8420088 0.43774217 prediction 0.69416433436603 Functional Loss - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100071725 chr9:100071729 nonsynonymous SNV 0.222 0 25 hm5C_associated_SNPs_50216 0 0 1 0 1 CCDC180 chr9:100071696 3'AG 100071696 Downstream 34bp
chr1 46976618 46976618 1 + G T UCEC 46976615 + 46976595 46976635 41 TCCCGTCCCCAGGTGTGGTTCAAGAACCGCCGGGCCAAGTT TCCCGTCCCCAGGTGTGGTTCAATAACCGCCGGGCCAAGTT < 41bp 0.847077746194791 0.497500672241514 0.39803904 0.24705568 prediction 0.694155492389583 Functional Loss - DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46976615 chr1:46976618 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_50217 0 0 0 0 1 DMBX1 chr1:46976607 3'AG 46976607 Downstream 12bp
chr7 100320317 100320317 1 + G T LGG 100320314 + 100320294 100320334 41 AGCAGGCCGTAGAAGTCTGGCAGGGCCTGGCCCTGCTGTCG AGCAGGCCGTAGAAGTCTGGCAGTGCCTGGCCCTGCTGTCG < 41bp 0.847032157228389 0.487575412787519 0.8964511 0.30833435 prediction 0.694064314456777 Functional Loss - EPO ENSG00000130427 CDS Human protein_coding chr7:100320314 chr7:100320317 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_50218 0 0 1 0 1 EPO chr7:100320287 3'AG 100320287 Downstream 31bp
chr1 43616487 43616487 1 + A C KIRC 43616483 + 43616463 43616503 41 GCATGATAACCTGGAGGAACCTGCAGATGGTAAGTCCTGGG GCATGATAACCTGGAGGAACCTGCCGATGGTAAGTCCTGGG < 41bp 0.847021644343831 0.47921158239938 0.27898467 0.22934106 prediction 0.694043288687661 Functional Loss - FAM183A ENSG00000186973 CDS Human protein_coding chr1:43616483 chr1:43616487 synonymous SNV . 0 25 hm5C_associated_SNPs_50219 0 0 0 0 2 FAM183A chr1:43616432 3'AG 43616432 Downstream 56bp
chr1 43616487 43616487 1 + A C KIRC 43616483 + 43616463 43616503 41 GCATGATAACCTGGAGGAACCTGCAGATGGTAAGTCCTGGG GCATGATAACCTGGAGGAACCTGCCGATGGTAAGTCCTGGG < 41bp 0.847021644343831 0.47921158239938 0.27898467 0.22934106 prediction 0.694043288687661 Functional Loss - FAM183A ENSG00000186973 CDS Human protein_coding chr1:43616483 chr1:43616487 synonymous SNV . 0 25 hm5C_associated_SNPs_50219 0 0 0 0 2 FAM183A chr1:43616491 5'GT 43616491 Upstream 5bp
chr20 3194649 3194649 1 + G T LUAD 3194646 + 3194626 3194666 41 TGCAGGTACAGGGGCCCGTGCTGGTTGAGGACACTTGTCTG TGCAGGTACAGGGGCCCGTGCTGTTTGAGGACACTTGTCTG < 41bp 0.846815367469618 0.490189230173171 0.4335707 0.3626452 prediction 0.693630734939235 Functional Loss - ITPA ENSG00000125877 CDS Human protein_coding chr20:3194646 chr20:3194649 nonsynonymous SNV 0.971 4 24 hm5C_associated_SNPs_50221 0 0 1 0 2 ITPA chr20:3194631 3'AG 3194631 Downstream 19bp
chr20 3194649 3194649 1 + G T LUAD 3194646 + 3194626 3194666 41 TGCAGGTACAGGGGCCCGTGCTGGTTGAGGACACTTGTCTG TGCAGGTACAGGGGCCCGTGCTGTTTGAGGACACTTGTCTG < 41bp 0.846815367469618 0.490189230173171 0.4335707 0.3626452 prediction 0.693630734939235 Functional Loss - ITPA ENSG00000125877 CDS Human protein_coding chr20:3194646 chr20:3194649 nonsynonymous SNV 0.971 4 24 hm5C_associated_SNPs_50221 0 0 1 0 2 ITPA chr20:3194704 5'GT 3194704 Upstream 56bp
chr12 49220851 49220851 1 + A C COAD 49220847 + 49220827 49220867 41 AGGTTTACTGGCGGGCCACGCACCACCCAGCCCCTGGCCCC AGGTTTACTGGCGGGCCACGCACCCCCCAGCCCCTGGCCCC < 41bp 0.877906229927482 0.531110057341341 0.42093632 0.30699068 prediction 0.693592345172283 Functional Loss - CACNB3 ENSG00000167535 CDS Human protein_coding chr12:49220847 chr12:49220851 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_50223 0 0 0 0 2 CACNB3 chr12:49220757 3'AG 49220757 Downstream 95bp
chr12 49220851 49220851 1 + A C COAD 49220847 + 49220827 49220867 41 AGGTTTACTGGCGGGCCACGCACCACCCAGCCCCTGGCCCC AGGTTTACTGGCGGGCCACGCACCCCCCAGCCCCTGGCCCC < 41bp 0.877906229927482 0.531110057341341 0.42093632 0.30699068 prediction 0.693592345172283 Functional Loss - CACNB3 ENSG00000167535 CDS Human protein_coding chr12:49220847 chr12:49220851 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_50223 0 0 0 0 2 CACNB3 chr12:49220906 5'GT 49220906 Upstream 56bp
chr4 108935637 108935637 1 + G T UCEC 108935634 + 108935614 108935654 41 CTGAGCACCATAGCGACCAGCACGGATGCAGCCTCCGTTGT CTGAGCACCATAGCGACCAGCACTGATGCAGCCTCCGTTGT < 41bp 0.846786734593386 0.494480267493494 0.28137702 0.1303092 prediction 0.693573469186771 Functional Loss - HADH ENSG00000138796 CDS Human protein_coding chr4:108935634 chr4:108935637 synonymous SNV . 0 24 hm5C_associated_SNPs_50224 0 0 0 0 1 HADH chr4:108935587 3'AG 108935587 Downstream 51bp
chrX 153048509 153048509 1 + G T LUAD 153048506 + 153048486 153048526 41 TGTGTGGGGGACGCTTACATCAGGCGCCTGGCTGCCGAGGC TGTGTGGGGGACGCTTACATCAGTCGCCTGGCTGCCGAGGC < 41bp 0.864933357279441 0.518189270197245 0.9192972 0.4730345 prediction 0.693488174164391 Functional Loss - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153048506 chrX:153048509 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_50225 0 0 0 0 1 SRPK3 chrX:153048573 5'GT 153048573 Upstream 65bp
chr12 6939612 6939612 1 + G T UCEC 6939609 + 6939589 6939629 41 GCTCTTCAGGGGAGCCTGGCCCAGATGGAGAGCTGCCGTGC GCTCTTCAGGGGAGCCTGGCCCATATGGAGAGCTGCCGTGC < 41bp 0.846443237819932 0.497731079903382 0.8216476 0.28641826 prediction 0.692886475639865 Functional Loss - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6939609 chr12:6939612 nonsynonymous SNV 0.988 0 24 hm5C_associated_SNPs_50228 0 0 1 0 1 P3H3 chr12:6939517 3'AG 6939517 Downstream 96bp
chr20 45801423 45801423 1 + G T SARC 45801420 + 45801400 45801440 41 AGCCAACCTGTGCCTGGGCTCTGGCGTGCACGGCGGCGTGG AGCCAACCTGTGCCTGGGCTCTGTCGTGCACGGCGGCGTGG < 41bp 0.847081259764886 0.500667290511876 0.60847276 0.07556763 prediction 0.692827938506021 Functional Loss - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45801420 chr20:45801423 nonsynonymous SNV 0.163 5 24 hm5C_associated_SNPs_50230 0 0 1 0 2 EYA2 chr20:45801355 3'AG 45801355 Downstream 69bp
chr20 45801423 45801423 1 + G T SARC 45801420 + 45801400 45801440 41 AGCCAACCTGTGCCTGGGCTCTGGCGTGCACGGCGGCGTGG AGCCAACCTGTGCCTGGGCTCTGTCGTGCACGGCGGCGTGG < 41bp 0.847081259764886 0.500667290511876 0.60847276 0.07556763 prediction 0.692827938506021 Functional Loss - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45801420 chr20:45801423 nonsynonymous SNV 0.163 5 24 hm5C_associated_SNPs_50230 0 0 1 0 2 EYA2 chr20:45801515 5'GT 45801515 Upstream 93bp
chrX 153496115 153496115 1 + G T THCA 153496112 + 153496092 153496132 41 GTCCTGGCATTCTGCTTCTGCTGGGGACCCTACGCCTTCTT GTCCTGGCATTCTGCTTCTGCTGTGGACCCTACGCCTTCTT < 41bp 0.857017224173651 0.510735314029931 0.8394392 0.22916842 prediction 0.69256382028744 Functional Loss - OPN1MW;OPN1MW2;OPN1MW3 ENSG00000166160 CDS Human protein_coding chrX:153496112 chrX:153496115 nonsynonymous SNV 0.643 1 24 hm5C_associated_SNPs_50235 0 0 0 0 1 OPN1MW;OPN1MW2;OPN1MW3 chrX:153496017 3'AG 153496017 Downstream 99bp
chr1 206664168 206664168 1 + G T UCEC 206664165 + 206664145 206664185 41 CCTCCAGGGCTTGGCTACAACGAGGAGCAGATTCACAAGCT CCTCCAGGGCTTGGCTACAACGATGAGCAGATTCACAAGCT < 41bp 0.846192320879271 0.492206345666833 0.8702977 0.24118504 prediction 0.692384641758543 Functional Loss - IKBKE ENSG00000143466 CDS Human other chr1:206664165 chr1:206664168 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_50238 0 0 1 0 2 IKBKE chr1:206664152 3'AG 206664152 Downstream 17bp
chr1 206664168 206664168 1 + G T UCEC 206664165 + 206664145 206664185 41 CCTCCAGGGCTTGGCTACAACGAGGAGCAGATTCACAAGCT CCTCCAGGGCTTGGCTACAACGATGAGCAGATTCACAAGCT < 41bp 0.846192320879271 0.492206345666833 0.8702977 0.24118504 prediction 0.692384641758543 Functional Loss - IKBKE ENSG00000143466 CDS Human other chr1:206664165 chr1:206664168 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_50238 0 0 1 0 2 IKBKE chr1:206664191 5'GT 206664191 Upstream 24bp
chr9 34514719 34514719 1 + A C COAD 34514715 + 34514695 34514735 41 ATACTCTTCTACTGTGTTCGCAGCAGTCACCACAGATGGGA ATACTCTTCTACTGTGTTCGCAGCCGTCACCACAGATGGGA < 41bp 0.846153619423321 0.479446599289958 0.4255141 0.5661102 prediction 0.692307238846641 Functional Loss - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34514715 chr9:34514719 synonymous SNV . 0 25 hm5C_associated_SNPs_50239 0 0 0 0 2 DNAI1 chr9:34514638 3'AG 34514638 Downstream 82bp
chr9 34514719 34514719 1 + A C COAD 34514715 + 34514695 34514735 41 ATACTCTTCTACTGTGTTCGCAGCAGTCACCACAGATGGGA ATACTCTTCTACTGTGTTCGCAGCCGTCACCACAGATGGGA < 41bp 0.846153619423321 0.479446599289958 0.4255141 0.5661102 prediction 0.692307238846641 Functional Loss - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34514715 chr9:34514719 synonymous SNV . 0 25 hm5C_associated_SNPs_50239 0 0 0 0 2 DNAI1 chr9:34514737 5'GT 34514737 Upstream 19bp
chr12 4835988 4835988 1 + G T UCEC 4835985 + 4835965 4836005 41 ATCGCACCATCCCCGACACGCGAGACTACAGGTGGGATGAA ATCGCACCATCCCCGACACGCGATACTACAGGTGGGATGAA < 41bp 0.846099541298253 0.498107797528272 0.82423466 0.90414035 prediction 0.692199082596506 Functional Loss - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4835985 chr12:4835988 nonsynonymous SNV 0.154 1 24 hm5C_associated_SNPs_50240 0 0 0 0 1 GALNT8 chr12:4835995 5'GT 4835995 Upstream 8bp
chr3 179080232 179080232 1 + A C UCEC 179080228 + 179080208 179080248 41 ACGTGTGTTTTGGCCAAAAGCAAAATGTGCCCTCTTGAGAG ACGTGTGTTTTGGCCAAAAGCAAACTGTGCCCTCTTGAGAG < 41bp 0.846064463484088 0.483348204562525 0.3052908 0.15350083 prediction 0.692128926968176 Functional Loss - MFN1 ENSG00000171109 CDS Human protein_coding chr3:179080228 chr3:179080232 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_50242 0 0 1 0 1 MFN1 chr3:179080270 5'GT 179080270 Upstream 39bp
chr18 63530072 63530072 1 + A C LUSC 63530068 + 63530048 63530088 41 GCTGACGGCGTAGCCCAGACCTGCAATGCAGAGGCCTATGT GCTGACGGCGTAGCCCAGACCTGCCATGCAGAGGCCTATGT < 41bp 0.874680709827392 0.528616729802778 0.17937553 0.091934115 prediction 0.692127960049227 Functional Loss - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63530068 chr18:63530072 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_50243 0 0 0 0 1 CDH7 chr18:63530153 5'GT 63530153 Upstream 82bp
chr7 2617950 2617950 1 + G T LUSC 2617947 + 2617927 2617967 41 CGCCTGGAGGAGGAAAACAGCAGGAAGGACCGGCAGATAGA CGCCTGGAGGAGGAAAACAGCAGTAAGGACCGGCAGATAGA < 41bp 0.852687293121044 0.506707530627369 0.876521 0.55314755 prediction 0.691959524987351 Functional Loss - IQCE ENSG00000106012 CDS Human protein_coding chr7:2617947 chr7:2617950 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_50246 0 0 0 0 2 IQCE chr7:2617876 3'AG 2617876 Downstream 75bp
chr7 2617950 2617950 1 + G T LUSC 2617947 + 2617927 2617967 41 CGCCTGGAGGAGGAAAACAGCAGGAAGGACCGGCAGATAGA CGCCTGGAGGAGGAAAACAGCAGTAAGGACCGGCAGATAGA < 41bp 0.852687293121044 0.506707530627369 0.876521 0.55314755 prediction 0.691959524987351 Functional Loss - IQCE ENSG00000106012 CDS Human protein_coding chr7:2617947 chr7:2617950 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_50246 0 0 0 0 2 IQCE chr7:2617989 5'GT 2617989 Upstream 40bp
chr1 15789237 15789237 1 + G T OV 15789234 + 15789214 15789254 41 CCCCTTTCTCCCAGCTCCTCCAGGACCTACCGCGTGGGGCT CCCCTTTCTCCCAGCTCCTCCAGTACCTACCGCGTGGGGCT < 41bp 0.845778338476321 0.49151675812003 0.6612047 0.12926456 prediction 0.691556676952642 Functional Loss - CELA2A ENSG00000142615 CDS Human protein_coding chr1:15789234 chr1:15789237 nonsynonymous SNV 0.010 1 24 hm5C_associated_SNPs_50249 0 0 0 0 1 CELA2A chr1:15789228 3'AG 15789228 Downstream 10bp
chr6 43220491 43220491 1 + G T LUSC 43220488 + 43220468 43220508 41 TCTTCATAGCTGAAAAAGATCGGGGGCGGGGGCTTTGGTGA TCTTCATAGCTGAAAAAGATCGGTGGCGGGGGCTTTGGTGA < 41bp 0.845735283161911 0.490485143014858 0.9215497 0.68010676 prediction 0.691470566323822 Functional Loss - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43220488 chr6:43220491 synonymous SNV . 0 24 hm5C_associated_SNPs_50251 0 0 0 0 1 TTBK1 chr6:43220477 3'AG 43220477 Downstream 15bp
chr18 61652467 61652467 1 + G T LUSC 61652464 + 61652444 61652484 41 ATTCTGCTTCCCGATGACAACACGGACCTCGCCGTGGTAAG ATTCTGCTTCCCGATGACAACACTGACCTCGCCGTGGTAAG < 41bp 0.847405865955085 0.501730691876077 0.5294526 0.22618133 prediction 0.691350348158017 Functional Loss - SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61652464 chr18:61652467 synonymous SNV . 0 24 hm5C_associated_SNPs_50253 0 0 0 0 1 SERPINB8 chr18:61652479 5'GT 61652479 Upstream 13bp
chr19 51729262 51729262 1 + A C LUSC 51729258 + 51729238 51729278 41 ACCCCACGGCCCCAGGACCACGGCACCAACCTGACCTGTCA ACCCCACGGCCCCAGGACCACGGCCCCAACCTGACCTGTCA < 41bp 0.854864976133095 0.50929389112598 0.54747695 0.58757126 prediction 0.69114217001423 Functional Loss - CD33 ENSG00000105383 CDS Human protein_coding chr19:51729258 chr19:51729262 nonsynonymous SNV 0.483 3 25 hm5C_associated_SNPs_50256 0 0 1 0 1 CD33 chr19:51729337 5'GT 51729337 Upstream 76bp
chr8 144126093 144126093 1 + G T BRCA 144126090 + 144126070 144126110 41 TGCCCTCTGCCCTGGCACCCCAGGGACTCACTGCCAAAGAC TGCCCTCTGCCCTGGCACCCCAGTGACTCACTGCCAAAGAC < 41bp 0.845496358678071 0.490919120393146 0.8952721 0.3441623 prediction 0.690992717356141 Functional Loss - C8orf31 ENSG00000177335 CDS Human processed_transcript chr8:144126090 chr8:144126093 stopgain . 0 24 hm5C_associated_SNPs_50258 0 0 0 4 1 C8orf31 chr8:144126066 3'AG 144126066 Downstream 28bp
chrX 55247851 55247851 1 + A C rs759965291 55247847 + 55247827 55247867 41 TGTAACAAGATCCCAATCCTCAGAAAGAGGAAATGACCAAG TGTAACAAGATCCCAATCCTCAGACAGAGGAAATGACCAAG < 41bp 0.859614476811928 0.514193971784018 0.36425743 0.27688345 prediction 0.690841010055819 Functional Loss - PAGE5 ENSG00000158639 CDS Human protein_coding chrX:55247847 chrX:55247851 nonsynonymous SNV 0.017 0 25 hm5C_associated_SNPs_50262 0 0 0 0 2 PAGE5 chrX:55247808 3'AG 55247808 Downstream 44bp
chrX 55247851 55247851 1 + A C rs759965291 55247847 + 55247827 55247867 41 TGTAACAAGATCCCAATCCTCAGAAAGAGGAAATGACCAAG TGTAACAAGATCCCAATCCTCAGACAGAGGAAATGACCAAG < 41bp 0.859614476811928 0.514193971784018 0.36425743 0.27688345 prediction 0.690841010055819 Functional Loss - PAGE5 ENSG00000158639 CDS Human protein_coding chrX:55247847 chrX:55247851 nonsynonymous SNV 0.017 0 25 hm5C_associated_SNPs_50262 0 0 0 0 2 PAGE5 chrX:55247896 5'GT 55247896 Upstream 46bp
chr12 52308264 52308264 1 + G T SARC 52308261 + 52308241 52308281 41 AAGTGTGGCGGGGCTTGTGGCACGGTGAGAGTGTGGCCGTC AAGTGTGGCGGGGCTTGTGGCACTGTGAGAGTGTGGCCGTC < 41bp 0.858474199060884 0.513123718819567 0.73322505 0.2876538 prediction 0.690700960482634 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52308261 chr12:52308264 nonsynonymous SNV 0.986 4 24 hm5C_associated_SNPs_50265 0 0 0 0 1 ACVRL1 chr12:52308223 3'AG 52308223 Downstream 42bp
chr14 102918939 102918939 1 + G T LUAD 102918936 + 102918916 102918956 41 AGCTGCCCCACGGGCATGCACTGGACCAGGCTGGACCTCTC AGCTGCCCCACGGGCATGCACTGTACCAGGCTGGACCTCTC < 41bp 0.84581583037119 0.500526154717459 0.8509744 0.22620061 prediction 0.690579351307463 Functional Loss - TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102918936 chr14:102918939 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_50266 0 0 1 0 1 TECPR2 chr14:102918964 5'GT 102918964 Upstream 26bp
chr2 233322749 233322749 1 + G T GBM 233322746 + 233322726 233322766 41 ACACGAAATATGAGATCCACCGAGACCCCACACTGGACCCC ACACGAAATATGAGATCCACCGATACCCCACACTGGACCCC < 41bp 0.847373292001853 0.502107233794798 0.16750902 0.020171493 prediction 0.69053211641411 Functional Loss - ALPI ENSG00000163295 CDS Human protein_coding chr2:233322746 chr2:233322749 nonsynonymous SNV 0.007 5 24 hm5C_associated_SNPs_50267 0 0 1 0 1 ALPI chr2:233322708 3'AG 233322708 Downstream 42bp
chr2 238990744 238990744 1 + G T LUSC 238990741 + 238990721 238990761 41 GAACCAGGAACGGGTGGCAGCTGGGCTACCTCCCATCCTCG GAACCAGGAACGGGTGGCAGCTGTGCTACCTCCCATCCTCG < 41bp 0.845203035198269 0.481777492478625 0.8678849 0.21555248 prediction 0.690406070396538 Functional Loss - SCLY ENSG00000132330 CDS Human protein_coding chr2:238990741 chr2:238990744 nonsynonymous SNV 0.103 1 24 hm5C_associated_SNPs_50269 0 0 1 0 1 SCLY chr2:238990686 3'AG 238990686 Downstream 59bp
chr19 5657268 5657268 1 + A C HNSC 5657264 + 5657244 5657284 41 TGAACTAGGCTTCCAAAAGCCAGGATCGCAAATCAGCCAGC TGAACTAGGCTTCCAAAAGCCAGGCTCGCAAATCAGCCAGC < 41bp 0.84513359568604 0.480586436916628 0.8458047 0.80961406 prediction 0.690267191372079 Functional Loss - SAFB ENSG00000160633 CDS Human protein_coding chr19:5657264 chr19:5657268 nonsynonymous SNV 0.947 4 25 hm5C_associated_SNPs_50271 0 0 1 0 2 SAFB chr19:5657252 3'AG 5657252 Downstream 17bp
chr19 5657268 5657268 1 + A C HNSC 5657264 + 5657244 5657284 41 TGAACTAGGCTTCCAAAAGCCAGGATCGCAAATCAGCCAGC TGAACTAGGCTTCCAAAAGCCAGGCTCGCAAATCAGCCAGC < 41bp 0.84513359568604 0.480586436916628 0.8458047 0.80961406 prediction 0.690267191372079 Functional Loss - SAFB ENSG00000160633 CDS Human protein_coding chr19:5657264 chr19:5657268 nonsynonymous SNV 0.947 4 25 hm5C_associated_SNPs_50271 0 0 1 0 2 SAFB chr19:5657358 5'GT 5657358 Upstream 91bp
chr16 19838372 19838372 1 + G T READ 19838369 + 19838349 19838389 41 TTCGCTGTGATCCTGAGATTCAAGAACTGCGTCAGTGGCAG TTCGCTGTGATCCTGAGATTCAATAACTGCGTCAGTGGCAG < 41bp 0.845085122429293 0.499907117983652 0.35195154 0.22474617 prediction 0.690170244858586 Functional Loss - IQCK ENSG00000174628 CDS Human protein_coding chr16:19838369 chr16:19838372 stopgain 0.868 1 24 hm5C_associated_SNPs_50272 0 0 0 0 2 IQCK chr16:19838348 3'AG 19838348 Downstream 25bp
chr16 19838372 19838372 1 + G T READ 19838369 + 19838349 19838389 41 TTCGCTGTGATCCTGAGATTCAAGAACTGCGTCAGTGGCAG TTCGCTGTGATCCTGAGATTCAATAACTGCGTCAGTGGCAG < 41bp 0.845085122429293 0.499907117983652 0.35195154 0.22474617 prediction 0.690170244858586 Functional Loss - IQCK ENSG00000174628 CDS Human protein_coding chr16:19838369 chr16:19838372 stopgain 0.868 1 24 hm5C_associated_SNPs_50272 0 0 0 0 2 IQCK chr16:19838459 5'GT 19838459 Upstream 88bp
chr16 68713832 68713832 1 + G T LUAD 68713829 + 68713809 68713849 41 GACCTCATGTTCACCATTCACCGGAGCACAGGCACCATCAG GACCTCATGTTCACCATTCACCGTAGCACAGGCACCATCAG < 41bp 0.844997015177853 0.486947505384464 0.5083427 0.02967447 prediction 0.689994030355705 Functional Loss - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68713829 chr16:68713832 synonymous SNV . 0 24 hm5C_associated_SNPs_50274 0 0 0 0 1 CDH3 chr16:68713877 5'GT 68713877 Upstream 46bp
chr19 3119349 3119349 1 + A C PAAD 3119345 + 3119325 3119365 41 CGCACCTGGTGGACTACTTCCCCGAGTTCGATGGTGCGCCG CGCACCTGGTGGACTACTTCCCCGCGTTCGATGGTGCGCCG < 41bp 0.860626082735287 0.515938132178469 0.46492568 0.18699628 prediction 0.689375901113637 Functional Loss - GNA11 ENSG00000088256 CDS Human protein_coding chr19:3119345 chr19:3119349 nonsynonymous SNV 0.861 2 25 hm5C_associated_SNPs_50279 0 0 1 0 1 GNA11 chr19:3119357 5'GT 3119357 Upstream 9bp
chr19 1528373 1528373 1 + G T UCEC 1528370 + 1528350 1528390 41 TCTTCGCCATACCCCCGCCTCTGGGCAGGATCTTCCGGAAG TCTTCGCCATACCCCCGCCTCTGTGCAGGATCTTCCGGAAG < 41bp 0.859794610547034 0.515126042419116 0.2057159 0.12143201 prediction 0.689337136255837 Functional Loss - PLK5 ENSG00000185988 CDS Human protein_coding chr19:1528370 chr19:1528373 nonsynonymous SNV 0.331 2 24 hm5C_associated_SNPs_50281 0 0 0 0 1 PLK5 chr19:1528427 5'GT 1528427 Upstream 55bp
chr3 113784218 113784218 1 + G T UCEC 113784215 + 113784195 113784235 41 CCAGGCTGCCTTCTGTATACCAAGACTGGCTCCGCCCCACA CCAGGCTGCCTTCTGTATACCAATACTGGCTCCGCCCCACA < 41bp 0.847560331111547 0.502953189338751 0.14996341 0.11704701 prediction 0.689214283545592 Functional Loss - QTRT2 ENSG00000151576 CDS Human protein_coding chr3:113784215 chr3:113784218 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_50284 0 0 0 0 1 QTRT2 chr3:113784304 5'GT 113784304 Upstream 87bp
chr1 150468986 150468986 1 + G T PRAD 150468983 + 150468963 150469003 41 ATCATCCTTATGGAGGTCTTCAGGGGCCCCAGAGACACTGC ATCATCCTTATGGAGGTCTTCAGTGGCCCCAGAGACACTGC < 41bp 0.858143848790167 0.513558860257211 0.94686997 0.39376116 prediction 0.689169977065912 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150468983 chr1:150468986 nonsynonymous SNV 0.114 0 24 hm5C_associated_SNPs_50285 0 0 0 2 1 TARS2 chr1:150468958 3'AG 150468958 Downstream 29bp
chr21 43524099 43524099 1 - C A UCEC 43524102 - 43524082 43524122 41 TGGAGATGCCCATGGGAAACCCGGGGTCCTGCACGGTGAGC TGGAGATGCCCATGGGAAACCCGTGGTCCTGCACGGTGAGC < 41bp 0.844523735037473 0.493335367189203 0.90062046 0.3022796 prediction 0.689047470074945 Functional Loss - UMODL1 ENSG00000177398;ENSG00000184385 CDS Human other chr21:43524102 chr21:43524099 nonsynonymous SNV 0.003 3 24 hm5C_associated_SNPs_50288 0 0 0 0 1 UMODL1 chr21:43524145 3'AG 43524145 Downstream 47bp
chr12 49220793 49220793 1 + G T BLCA 49220790 + 49220770 49220810 41 TGATTCTGGATGAGAACCAGCTGGAGGATGCCTGTGAGCAC TGATTCTGGATGAGAACCAGCTGTAGGATGCCTGTGAGCAC < 41bp 0.846290416968933 0.50178808787263 0.18152103 0.123824686 prediction 0.689004658192607 Functional Loss - CACNB3 ENSG00000167535 CDS Human protein_coding chr12:49220790 chr12:49220793 stopgain 0.996 1 24 hm5C_associated_SNPs_50289 0 0 1 0 1 CACNB3 chr12:49220757 3'AG 49220757 Downstream 37bp
chr1 161089367 161089367 1 + A C UCEC 161089363 + 161089343 161089383 41 GCCAAGACTGGGAGCAGACTCAGAAAATCTACAATTGTCAC GCCAAGACTGGGAGCAGACTCAGACAATCTACAATTGTCAC < 41bp 0.872513683970171 0.528064711448283 0.31385767 0.26315248 prediction 0.688897945043776 Functional Loss - NIT1 ENSG00000158793 CDS Human protein_coding chr1:161089363 chr1:161089367 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_50291 0 0 1 0 2 NIT1 chr1:161089299 3'AG 161089299 Downstream 69bp
chr1 161089367 161089367 1 + A C UCEC 161089363 + 161089343 161089383 41 GCCAAGACTGGGAGCAGACTCAGAAAATCTACAATTGTCAC GCCAAGACTGGGAGCAGACTCAGACAATCTACAATTGTCAC < 41bp 0.872513683970171 0.528064711448283 0.31385767 0.26315248 prediction 0.688897945043776 Functional Loss - NIT1 ENSG00000158793 CDS Human protein_coding chr1:161089363 chr1:161089367 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_50291 0 0 1 0 2 NIT1 chr1:161089402 5'GT 161089402 Upstream 36bp
chrX 19371255 19371255 1 + G T UCEC 19371252 + 19371232 19371272 41 GGATCGATGCACATGTATGCCAAGAACTTCTACGGGGGCAA GGATCGATGCACATGTATGCCAATAACTTCTACGGGGGCAA < 41bp 0.852650602910635 0.508217334339501 0.16568989 0.14317349 prediction 0.688866537142268 Functional Loss - PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19371252 chrX:19371255 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50292 0 0 1 0 2 PDHA1 chrX:19371200 3'AG 19371200 Downstream 56bp
chrX 19371255 19371255 1 + G T UCEC 19371252 + 19371232 19371272 41 GGATCGATGCACATGTATGCCAAGAACTTCTACGGGGGCAA GGATCGATGCACATGTATGCCAATAACTTCTACGGGGGCAA < 41bp 0.852650602910635 0.508217334339501 0.16568989 0.14317349 prediction 0.688866537142268 Functional Loss - PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19371252 chrX:19371255 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50292 0 0 1 0 2 PDHA1 chrX:19371291 5'GT 19371291 Upstream 37bp
chr1 28861844 28861844 1 + G T LUAD 28861841 + 28861821 28861861 41 GCTGCGGGGAACAGGGCCAGCTAGGCCGTGTGCCTGAGTTA GCTGCGGGGAACAGGGCCAGCTATGCCGTGTGCCTGAGTTA < 41bp 0.844379666676733 0.490585417862285 0.24151722 0.24793682 prediction 0.688759333353465 Functional Loss - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28861841 chr1:28861844 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_50296 0 0 1 0 2 RCC1 chr1:28861770 3'AG 28861770 Downstream 75bp
chr1 28861844 28861844 1 + G T LUAD 28861841 + 28861821 28861861 41 GCTGCGGGGAACAGGGCCAGCTAGGCCGTGTGCCTGAGTTA GCTGCGGGGAACAGGGCCAGCTATGCCGTGTGCCTGAGTTA < 41bp 0.844379666676733 0.490585417862285 0.24151722 0.24793682 prediction 0.688759333353465 Functional Loss - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28861841 chr1:28861844 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_50296 0 0 1 0 2 RCC1 chr1:28861892 5'GT 28861892 Upstream 49bp
chr19 6897289 6897289 1 + G T LUSC 6897286 + 6897266 6897306 41 CACTGGAAATGACTGGGTCCCAGGAAAGCCGGGCAATTTCT CACTGGAAATGACTGGGTCCCAGTAAAGCCGGGCAATTTCT < 41bp 0.844324402837904 0.499309491470847 0.88743633 0.20868883 prediction 0.688648805675809 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6897286 chr19:6897289 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_50298 0 0 0 0 1 ADGRE1 chr19:6897315 5'GT 6897315 Upstream 27bp
chr19 16296291 16296291 1 + A C COAD 16296287 + 16296267 16296307 41 AGCAGGTCCAAAAGGGACCCCTGAAGCTGAAAGGCGTCGCA AGCAGGTCCAAAAGGGACCCCTGACGCTGAAAGGCGTCGCA < 41bp 0.854689703693154 0.510615969286671 0.42401117 0.38121772 prediction 0.688147468812967 Functional Loss - FAM32A ENSG00000105058 CDS Human protein_coding chr19:16296287 chr19:16296291 nonsynonymous SNV 0.954 4 25 hm5C_associated_SNPs_50304 0 0 1 0 1 FAM32A chr19:16296327 5'GT 16296327 Upstream 37bp
chr19 11559781 11559781 1 + G T LUAD 11559778 + 11559758 11559798 41 TTGTCTCGCAGAAACCCAAACTCGGGGGCTCTCCCACCAGC TTGTCTCGCAGAAACCCAAACTCTGGGGCTCTCCCACCAGC < 41bp 0.843947673127049 0.493489731812445 0.37278283 0.14811775 prediction 0.687895346254098 Functional Loss - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11559778 chr19:11559781 nonsynonymous SNV 0.544 3 24 hm5C_associated_SNPs_50305 0 0 1 0 2 PRKCSH chr19:11559729 3'AG 11559729 Downstream 53bp
chr19 11559781 11559781 1 + G T LUAD 11559778 + 11559758 11559798 41 TTGTCTCGCAGAAACCCAAACTCGGGGGCTCTCCCACCAGC TTGTCTCGCAGAAACCCAAACTCTGGGGCTCTCCCACCAGC < 41bp 0.843947673127049 0.493489731812445 0.37278283 0.14811775 prediction 0.687895346254098 Functional Loss - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11559778 chr19:11559781 nonsynonymous SNV 0.544 3 24 hm5C_associated_SNPs_50305 0 0 1 0 2 PRKCSH chr19:11559803 5'GT 11559803 Upstream 23bp
chr11 130343026 130343026 1 + G T LUAD 130343023 + 130343003 130343043 41 CGCGGTTACAAAGGGCTGATCGGGGATGACAACTACCTGGC CGCGGTTACAAAGGGCTGATCGGTGATGACAACTACCTGGC < 41bp 0.865236238512364 0.521382414766634 0.95796573 0.8356371 prediction 0.68770764749146 Functional Loss - ADAMTS15 ENSG00000166106 CDS Human protein_coding chr11:130343023 chr11:130343026 synonymous SNV . 0 24 hm5C_associated_SNPs_50309 0 0 0 0 1 ADAMTS15 chr11:130342942 3'AG 130342942 Downstream 85bp
chr2 97216893 97216893 1 + G T SKCM 97216890 + 97216870 97216910 41 ACCCAGCACCACTTCCCAGCCAGGAGCCCCCCAGGAACAGC ACCCAGCACCACTTCCCAGCCAGTAGCCCCCCAGGAACAGC < 41bp 0.850129541402801 0.506291320649127 0.7431621 0.054914176 prediction 0.687676441507348 Functional Loss - ARID5A ENSG00000196843 CDS Human protein_coding chr2:97216890 chr2:97216893 stopgain 0.028 0 24 hm5C_associated_SNPs_50310 0 0 0 0 1 ARID5A chr2:97216836 3'AG 97216836 Downstream 58bp
chr8 145584284 145584284 1 + G T UCEC 145584281 + 145584261 145584301 41 GGCTGGGCGGCCTCTCTCTGCTGGGCGTGTTCTGTGGGGGC GGCTGGGCGGCCTCTCTCTGCTGTGCGTGTTCTGTGGGGGC < 41bp 0.843808377913621 0.490675739913773 0.82990134 0.27426183 prediction 0.687616755827242 Functional Loss - SLC52A2 ENSG00000185803 CDS Human protein_coding chr8:145584281 chr8:145584284 nonsynonymous SNV 0.962 2 24 hm5C_associated_SNPs_50311 0 0 1 0 2 SLC52A2 chr8:145584250 3'AG 145584250 Downstream 35bp
chr8 145584284 145584284 1 + G T UCEC 145584281 + 145584261 145584301 41 GGCTGGGCGGCCTCTCTCTGCTGGGCGTGTTCTGTGGGGGC GGCTGGGCGGCCTCTCTCTGCTGTGCGTGTTCTGTGGGGGC < 41bp 0.843808377913621 0.490675739913773 0.82990134 0.27426183 prediction 0.687616755827242 Functional Loss - SLC52A2 ENSG00000185803 CDS Human protein_coding chr8:145584281 chr8:145584284 nonsynonymous SNV 0.962 2 24 hm5C_associated_SNPs_50311 0 0 1 0 2 SLC52A2 chr8:145584373 5'GT 145584373 Upstream 90bp
chr15 40564853 40564853 1 + G T THYM 40564850 + 40564830 40564870 41 TGCTTGGCCCGGGAGAAGCACTCGGGCCGCCAGGTGGCCGT TGCTTGGCCCGGGAGAAGCACTCTGGCCGCCAGGTGGCCGT < 41bp 0.843789500018801 0.490187276002909 0.4260678 0.054661572 prediction 0.687579000037602 Functional Loss - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40564850 chr15:40564853 synonymous SNV . 0 24 hm5C_associated_SNPs_50312 0 0 0 0 1 BUB1B-PAK6;PAK6 chr15:40564922 5'GT 40564922 Upstream 70bp
chr20 31427641 31427641 1 + G T UCEC 31427638 + 31427618 31427658 41 GGTGTGGGCAACGGAGACGACGAGGCAGCTGAGTTGATGCA GGTGTGGGCAACGGAGACGACGATGCAGCTGAGTTGATGCA < 41bp 0.843780699522195 0.495203669055479 0.4191328 0.020183355 prediction 0.68756139904439 Functional Loss - MAPRE1 ENSG00000101367 CDS Human protein_coding chr20:31427638 chr20:31427641 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_50313 0 0 1 0 1 MAPRE1 chr20:31427662 5'GT 31427662 Upstream 22bp
chr2 242289548 242289548 1 + G T LUSC 242289545 + 242289525 242289565 41 CGCAGATGCAGATGCAGATGCAGGGCGGGGATGGCGATGGC CGCAGATGCAGATGCAGATGCAGTGCGGGGATGGCGATGGC < 41bp 0.85420955604759 0.510498037034671 0.7205263 0.22357735 prediction 0.687423038025838 Functional Loss - SEPT2 ENSG00000168385 CDS Human protein_coding chr2:242289545 chr2:242289548 nonsynonymous SNV 0.601 2 24 hm5C_associated_SNPs_50316 0 0 1 0 2 SEPT2 chr2:242289488 3'AG 242289488 Downstream 61bp
chr2 242289548 242289548 1 + G T LUSC 242289545 + 242289525 242289565 41 CGCAGATGCAGATGCAGATGCAGGGCGGGGATGGCGATGGC CGCAGATGCAGATGCAGATGCAGTGCGGGGATGGCGATGGC < 41bp 0.85420955604759 0.510498037034671 0.7205263 0.22357735 prediction 0.687423038025838 Functional Loss - SEPT2 ENSG00000168385 CDS Human protein_coding chr2:242289545 chr2:242289548 nonsynonymous SNV 0.601 2 24 hm5C_associated_SNPs_50316 0 0 1 0 2 SEPT2 chr2:242289618 5'GT 242289618 Upstream 71bp
chr17 18284767 18284767 1 + G T UCEC 18284764 + 18284744 18284784 41 AAGGAGGCCGAGGTGCTGCTCAAGGACCTCTTCCTGGACGT AAGGAGGCCGAGGTGCTGCTCAATGACCTCTTCCTGGACGT < 41bp 0.84365304272102 0.47967096561559 0.78805345 0.549789 prediction 0.68730608544204 Functional Loss - EVPLL ENSG00000214860 CDS Human protein_coding chr17:18284764 chr17:18284767 nonsynonymous SNV 0.975 1 24 hm5C_associated_SNPs_50318 0 0 0 0 2 EVPLL chr17:18284681 3'AG 18284681 Downstream 87bp
chr17 18284767 18284767 1 + G T UCEC 18284764 + 18284744 18284784 41 AAGGAGGCCGAGGTGCTGCTCAAGGACCTCTTCCTGGACGT AAGGAGGCCGAGGTGCTGCTCAATGACCTCTTCCTGGACGT < 41bp 0.84365304272102 0.47967096561559 0.78805345 0.549789 prediction 0.68730608544204 Functional Loss - EVPLL ENSG00000214860 CDS Human protein_coding chr17:18284764 chr17:18284767 nonsynonymous SNV 0.975 1 24 hm5C_associated_SNPs_50318 0 0 0 0 2 EVPLL chr17:18284835 5'GT 18284835 Upstream 69bp
chr21 42613849 42613849 1 + G T LUSC 42613846 + 42613826 42613866 41 TGGAGCCGGCTTGCCCGTTGCTGGATCTGGGACCAACGGAG TGGAGCCGGCTTGCCCGTTGCTGTATCTGGGACCAACGGAG < 41bp 0.843617392204306 0.495011956135117 0.84557784 0.6787512 prediction 0.687234784408612 Functional Loss - BACE2 ENSG00000182240 CDS Human protein_coding chr21:42613846 chr21:42613849 nonsynonymous SNV 0.982 0 24 hm5C_associated_SNPs_50319 0 0 1 0 1 BACE2 chr21:42613874 5'GT 42613874 Upstream 26bp
chr2 97017653 97017653 1 + G T KIRP 97017650 + 97017630 97017670 41 TTCTGTCCACTCTCCACTGCCAGGACTACAGAAGTGAACTG TTCTGTCCACTCTCCACTGCCAGTACTACAGAAGTGAACTG < 41bp 0.843574524652228 0.493871826126289 0.8833492 0.32191855 prediction 0.687149049304455 Functional Loss - NCAPH ENSG00000121152 CDS Human protein_coding chr2:97017650 chr2:97017653 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_50320 0 0 1 0 1 NCAPH chr2:97017569 3'AG 97017569 Downstream 85bp
chr11 126124295 126124295 1 + A C rs376719473 126124291 + 126124271 126124311 41 TGGCATTGTCCTTCATCCGGCTGGATATCAGAACGTGCTCA TGGCATTGTCCTTCATCCGGCTGGCTATCAGAACGTGCTCA < 41bp 0.843573187372752 0.476190684393557 0.120695174 0.086046904 prediction 0.687146374745505 Functional Loss - FAM118B ENSG00000197798 CDS Human protein_coding chr11:126124291 chr11:126124295 synonymous SNV . 0 25 hm5C_associated_SNPs_50321 0 0 0 0 2 FAM118B chr11:126124200 3'AG 126124200 Downstream 96bp
chr11 126124295 126124295 1 + A C rs376719473 126124291 + 126124271 126124311 41 TGGCATTGTCCTTCATCCGGCTGGATATCAGAACGTGCTCA TGGCATTGTCCTTCATCCGGCTGGCTATCAGAACGTGCTCA < 41bp 0.843573187372752 0.476190684393557 0.120695174 0.086046904 prediction 0.687146374745505 Functional Loss - FAM118B ENSG00000197798 CDS Human protein_coding chr11:126124291 chr11:126124295 synonymous SNV . 0 25 hm5C_associated_SNPs_50321 0 0 0 0 2 FAM118B chr11:126124328 5'GT 126124328 Upstream 34bp
chr19 56160593 56160593 1 + G T COAD 56160590 + 56160570 56160610 41 GTGAAGGACGATGAGACCTTCGAGATCTCCATTCCCTTCGA GTGAAGGACGATGAGACCTTCGATATCTCCATTCCCTTCGA < 41bp 0.847870341685966 0.504429960609507 0.118133545 0.0085195005 prediction 0.686880762152917 Functional Loss - CCDC106 ENSG00000173581 CDS Human protein_coding chr19:56160590 chr19:56160593 nonsynonymous SNV 0.981 1 24 hm5C_associated_SNPs_50326 0 0 0 0 1 CCDC106 chr19:56160571 3'AG 56160571 Downstream 23bp
chr19 3193375 3193375 1 + A C rs75377748 3193371 + 3193351 3193391 41 GACGAGGCCCTGCTGTCTATCTACAAGCAGACCCAGGCTGC GACGAGGCCCTGCTGTCTATCTACCAGCAGACCCAGGCTGC < 41bp 0.87637122496231 0.533041910996535 0.51250154 0.056785315 prediction 0.68665862793155 Functional Loss - NCLN ENSG00000125912 CDS Human protein_coding chr19:3193371 chr19:3193375 nonsynonymous SNV 0.892 1 25 hm5C_associated_SNPs_50328 0 0 1 0 2 NCLN chr19:3193282 3'AG 3193282 Downstream 94bp
chr19 3193375 3193375 1 + A C rs75377748 3193371 + 3193351 3193391 41 GACGAGGCCCTGCTGTCTATCTACAAGCAGACCCAGGCTGC GACGAGGCCCTGCTGTCTATCTACCAGCAGACCCAGGCTGC < 41bp 0.87637122496231 0.533041910996535 0.51250154 0.056785315 prediction 0.68665862793155 Functional Loss - NCLN ENSG00000125912 CDS Human protein_coding chr19:3193371 chr19:3193375 nonsynonymous SNV 0.892 1 25 hm5C_associated_SNPs_50328 0 0 1 0 2 NCLN chr19:3193426 5'GT 3193426 Upstream 52bp
chr11 63978128 63978128 1 + A C rs146932041 63978124 + 63978104 63978144 41 ACCATGCTATTTGGTGGGAACAGAAGAGGCAGTGGCTGCTG ACCATGCTATTTGGTGGGAACAGACGAGGCAGTGGCTGCTG < 41bp 0.86085901543717 0.517585162190125 0.41020435 0.2815497 prediction 0.68654770649409 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63978124 chr11:63978128 nonsynonymous SNV 0.987 4 25 hm5C_associated_SNPs_50330 0 0 1 0 1 FERMT3 chr11:63978083 3'AG 63978083 Downstream 46bp
chr12 117426610 117426610 1 + A C BRCA 117426606 + 117426586 117426626 41 ACGGCCCGCCTGTCACATGTCTAGACGTCTCGGCCAACCAA ACGGCCCGCCTGTCACATGTCTAGCCGTCTCGGCCAACCAA < 41bp 0.8432654097445 0.456203894236351 0.30079728 0.0569683 prediction 0.686530819488999 Functional Loss - FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117426606 chr12:117426610 nonsynonymous SNV 0.975 4 25 hm5C_associated_SNPs_50331 0 0 0 0 1 FBXW8 chr12:117426674 5'GT 117426674 Upstream 65bp
chr1 6269374 6269374 1 + G T LUAD 6269371 + 6269351 6269391 41 ACCTGGAATCGGCTTACGTGCAGGGCTGCGAGCGGCTGGAG ACCTGGAATCGGCTTACGTGCAGTGCTGCGAGCGGCTGGAG < 41bp 0.843608860298842 0.500366607512304 0.9139123 0.80623233 prediction 0.686484505573075 Functional Loss - RNF207 ENSG00000158286 CDS Human protein_coding chr1:6269371 chr1:6269374 nonsynonymous SNV 0.986 3 24 hm5C_associated_SNPs_50336 0 0 1 0 2 RNF207 chr1:6269328 3'AG 6269328 Downstream 47bp
chr1 6269374 6269374 1 + G T LUAD 6269371 + 6269351 6269391 41 ACCTGGAATCGGCTTACGTGCAGGGCTGCGAGCGGCTGGAG ACCTGGAATCGGCTTACGTGCAGTGCTGCGAGCGGCTGGAG < 41bp 0.843608860298842 0.500366607512304 0.9139123 0.80623233 prediction 0.686484505573075 Functional Loss - RNF207 ENSG00000158286 CDS Human protein_coding chr1:6269371 chr1:6269374 nonsynonymous SNV 0.986 3 24 hm5C_associated_SNPs_50336 0 0 1 0 2 RNF207 chr1:6269403 5'GT 6269403 Upstream 30bp
chr1 46878853 46878853 1 + G T LUSC 46878850 + 46878830 46878870 41 GAGGCCCAGATGGAACATTACAGGGGCTACTTTGGGGATAT GAGGCCCAGATGGAACATTACAGTGGCTACTTTGGGGATAT < 41bp 0.844595676950568 0.501411361024651 0.9040402 0.38840646 prediction 0.686368631851834 Functional Loss - FAAH ENSG00000117480 CDS Human protein_coding chr1:46878850 chr1:46878853 nonsynonymous SNV 0.584 1 24 hm5C_associated_SNPs_50337 0 0 0 1 2 FAAH chr1:46878795 3'AG 46878795 Downstream 59bp
chr1 46878853 46878853 1 + G T LUSC 46878850 + 46878830 46878870 41 GAGGCCCAGATGGAACATTACAGGGGCTACTTTGGGGATAT GAGGCCCAGATGGAACATTACAGTGGCTACTTTGGGGATAT < 41bp 0.844595676950568 0.501411361024651 0.9040402 0.38840646 prediction 0.686368631851834 Functional Loss - FAAH ENSG00000117480 CDS Human protein_coding chr1:46878850 chr1:46878853 nonsynonymous SNV 0.584 1 24 hm5C_associated_SNPs_50337 0 0 0 1 2 FAAH chr1:46878892 5'GT 46878892 Upstream 40bp
chr12 113435403 113435403 1 + G T BRCA 113435400 + 113435380 113435420 41 TTACGGTGTATGCCTGGGAACAGGGGTGCAGAAAAGACAAC TTACGGTGTATGCCTGGGAACAGTGGTGCAGAAAAGACAAC < 41bp 0.842975610906354 0.488229071762551 0.89486176 0.20253575 prediction 0.685951221812709 Functional Loss - OAS2 ENSG00000111335 CDS Human protein_coding chr12:113435400 chr12:113435403 nonsynonymous SNV 0.903 3 24 hm5C_associated_SNPs_50339 0 0 0 0 1 OAS2 chr12:113435325 3'AG 113435325 Downstream 79bp
chrX 70613222 70613222 1 + A C GBM 70613218 + 70613198 70613238 41 GTCAACAGAACAGGCTCGTTCTGGAGAGGGGCCCATGAGTA GTCAACAGAACAGGCTCGTTCTGGCGAGGGGCCCATGAGTA < 41bp 0.842928353242151 0.48566979996162 0.41721937 0.33856913 prediction 0.685856706484302 Functional Loss - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70613218 chrX:70613222 synonymous SNV . 0 25 hm5C_associated_SNPs_50342 0 0 1 0 1 TAF1 chrX:70613151 3'AG 70613151 Downstream 72bp
chr19 11460702 11460702 1 + G T GBM 11460699 + 11460679 11460719 41 AGCCAGTTACAGGCCCAGACCAAGGTGAACCACCTTGGCCC AGCCAGTTACAGGCCCAGACCAATGTGAACCACCTTGGCCC < 41bp 0.842912386731587 0.480475115604372 0.91574323 0.2816925 prediction 0.685824773463174 Functional Loss - CCDC159 ENSG00000183401 CDS Human protein_coding chr19:11460699 chr19:11460702 nonsynonymous SNV 0.967 3 24 hm5C_associated_SNPs_50344 0 0 0 0 2 CCDC159 chr19:11460614 3'AG 11460614 Downstream 89bp
chr19 11460702 11460702 1 + G T GBM 11460699 + 11460679 11460719 41 AGCCAGTTACAGGCCCAGACCAAGGTGAACCACCTTGGCCC AGCCAGTTACAGGCCCAGACCAATGTGAACCACCTTGGCCC < 41bp 0.842912386731587 0.480475115604372 0.91574323 0.2816925 prediction 0.685824773463174 Functional Loss - CCDC159 ENSG00000183401 CDS Human protein_coding chr19:11460699 chr19:11460702 nonsynonymous SNV 0.967 3 24 hm5C_associated_SNPs_50344 0 0 0 0 2 CCDC159 chr19:11460702 5'GT 11460702 Upstream 1bp
chr16 31273069 31273069 1 + G T UCEC 31273066 + 31273046 31273086 41 CTGAAAACGCAATGACCTTCCAAGAGAACGCAAGGGGCTTC CTGAAAACGCAATGACCTTCCAATAGAACGCAAGGGGCTTC < 41bp 0.842898620831087 0.496503091369846 0.3295815 0.06573033 prediction 0.685797241662174 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31273066 chr16:31273069 stopgain 0.835 0 24 hm5C_associated_SNPs_50345 0 0 0 0 2 ITGAM chr16:31273013 3'AG 31273013 Downstream 57bp
chr16 31273069 31273069 1 + G T UCEC 31273066 + 31273046 31273086 41 CTGAAAACGCAATGACCTTCCAAGAGAACGCAAGGGGCTTC CTGAAAACGCAATGACCTTCCAATAGAACGCAAGGGGCTTC < 41bp 0.842898620831087 0.496503091369846 0.3295815 0.06573033 prediction 0.685797241662174 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31273066 chr16:31273069 stopgain 0.835 0 24 hm5C_associated_SNPs_50345 0 0 0 0 2 ITGAM chr16:31273118 5'GT 31273118 Upstream 50bp
chr19 15806829 15806829 1 + G T LUSC 15806826 + 15806806 15806846 41 TCCCCCAGCTCCCTTCATCTCCCGATGCTGCACCCAGGACA TCCCCCAGCTCCCTTCATCTCCCTATGCTGCACCCAGGACA < 41bp 0.854820552739237 0.511965990134836 0.17571878 0.14992896 prediction 0.685709125208802 Functional Loss - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15806826 chr19:15806829 nonsynonymous SNV 0.129 4 24 hm5C_associated_SNPs_50348 0 0 1 0 2 CYP4F12 chr19:15806746 3'AG 15806746 Downstream 84bp
chr19 15806829 15806829 1 + G T LUSC 15806826 + 15806806 15806846 41 TCCCCCAGCTCCCTTCATCTCCCGATGCTGCACCCAGGACA TCCCCCAGCTCCCTTCATCTCCCTATGCTGCACCCAGGACA < 41bp 0.854820552739237 0.511965990134836 0.17571878 0.14992896 prediction 0.685709125208802 Functional Loss - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15806826 chr19:15806829 nonsynonymous SNV 0.129 4 24 hm5C_associated_SNPs_50348 0 0 1 0 2 CYP4F12 chr19:15806879 5'GT 15806879 Upstream 51bp
chr20 61471922 61471922 1 + G T UCEC 61471919 + 61471899 61471939 41 CAAGGCGTGCCCGGCACCAGCAAGGACGGCCAGGACGGTGC CAAGGCGTGCCCGGCACCAGCAATGACGGCCAGGACGGTGC < 41bp 0.849946664881488 0.507128248500748 0.82826406 0.41731092 prediction 0.685636832761479 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61471919 chr20:61471922 nonsynonymous SNV 0.175 4 24 hm5C_associated_SNPs_50349 0 0 1 0 1 COL9A3 chr20:61471894 3'AG 61471894 Downstream 29bp
chr5 147491427 147491427 1 + G T LUSC 147491424 + 147491404 147491444 41 AGGGTCTAGATGGGAAAATCCACGGCAACACCTGCTCCATG AGGGTCTAGATGGGAAAATCCACTGCAACACCTGCTCCATG < 41bp 0.843009108278782 0.50026859008685 0.3697192 0.15579477 prediction 0.685481036383864 Functional Loss - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147491424 chr5:147491427 nonsynonymous SNV 0.841 3 24 hm5C_associated_SNPs_50351 0 0 0 0 2 SPINK5 chr5:147491331 3'AG 147491331 Downstream 97bp
chr5 147491427 147491427 1 + G T LUSC 147491424 + 147491404 147491444 41 AGGGTCTAGATGGGAAAATCCACGGCAACACCTGCTCCATG AGGGTCTAGATGGGAAAATCCACTGCAACACCTGCTCCATG < 41bp 0.843009108278782 0.50026859008685 0.3697192 0.15579477 prediction 0.685481036383864 Functional Loss - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147491424 chr5:147491427 nonsynonymous SNV 0.841 3 24 hm5C_associated_SNPs_50351 0 0 0 0 2 SPINK5 chr5:147491458 5'GT 147491458 Upstream 32bp
chr14 69805381 69805381 1 + G T LUAD 69805378 + 69805358 69805398 41 TTTCCTGCAGAGCTCTCCTTCAGGGTGTGGATGTGTGGTGG TTTCCTGCAGAGCTCTCCTTCAGTGTGTGGATGTGTGGTGG < 41bp 0.861117051634421 0.518407519323699 0.9225611 0.22539777 prediction 0.685419064621444 Functional Loss - GALNT16 ENSG00000100626 CDS Human protein_coding chr14:69805378 chr14:69805381 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_50354 0 0 0 0 1 GALNT16 chr14:69805368 3'AG 69805368 Downstream 14bp
chr6 109762600 109762600 1 + A C rs749621 109762596 + 109762576 109762616 41 AGCAAGCACCGGGCCGACCGCATGAGGCGCCTGGGAGACTT AGCAAGCACCGGGCCGACCGCATGCGGCGCCTGGGAGACTT < 41bp 0.865813531300279 0.523185846577936 0.34052163 0.21874312 prediction 0.685255369444685 Functional Loss - SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109762596 chr6:109762600 synonymous SNV . 0 25 hm5C_associated_SNPs_50357 0 0 0 0 2 SMPD2 chr6:109762560 3'AG 109762560 Downstream 41bp
chr6 109762600 109762600 1 + A C rs749621 109762596 + 109762576 109762616 41 AGCAAGCACCGGGCCGACCGCATGAGGCGCCTGGGAGACTT AGCAAGCACCGGGCCGACCGCATGCGGCGCCTGGGAGACTT < 41bp 0.865813531300279 0.523185846577936 0.34052163 0.21874312 prediction 0.685255369444685 Functional Loss - SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109762596 chr6:109762600 synonymous SNV . 0 25 hm5C_associated_SNPs_50357 0 0 0 0 2 SMPD2 chr6:109762656 5'GT 109762656 Upstream 57bp
chr16 72094027 72094027 1 + G T UCEC 72094024 + 72094004 72094044 41 TTGACAGTATGTGGGAAGCCCAAGAATCCGGCAAACCCAGT TTGACAGTATGTGGGAAGCCCAATAATCCGGCAAACCCAGT < 41bp 0.842599660277554 0.496493885641675 0.30521166 0.796324 prediction 0.685199320555109 Functional Loss - HP ENSG00000257017 CDS Human protein_coding chr16:72094024 chr16:72094027 nonsynonymous SNV 0.386 0 24 hm5C_associated_SNPs_50359 0 0 0 0 1 HP chr16:72094011 3'AG 72094011 Downstream 17bp
chr14 105926761 105926761 1 + G T KIRC 105926758 + 105926738 105926778 41 GTCCGACAGCCCAGCCTGCACATGAGCGCCGCAGCTGCCTC GTCCGACAGCCCAGCCTGCACATTAGCGCCGCAGCTGCCTC < 41bp 0.842571626627357 0.491578173288105 0.31475782 0.22851661 prediction 0.685143253254713 Functional Loss - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105926758 chr14:105926761 nonsynonymous SNV 0.959 2 24 hm5C_associated_SNPs_50361 0 0 1 0 2 MTA1 chr14:105926695 3'AG 105926695 Downstream 67bp
chr14 105926761 105926761 1 + G T KIRC 105926758 + 105926738 105926778 41 GTCCGACAGCCCAGCCTGCACATGAGCGCCGCAGCTGCCTC GTCCGACAGCCCAGCCTGCACATTAGCGCCGCAGCTGCCTC < 41bp 0.842571626627357 0.491578173288105 0.31475782 0.22851661 prediction 0.685143253254713 Functional Loss - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105926758 chr14:105926761 nonsynonymous SNV 0.959 2 24 hm5C_associated_SNPs_50361 0 0 1 0 2 MTA1 chr14:105926794 5'GT 105926794 Upstream 34bp
chr16 1550635 1550635 1 + G T LUAD 1550632 + 1550612 1550652 41 GCCTGCCCCCCGTGCGACGCCTGGGCATGATCGTGGCAGAG GCCTGCCCCCCGTGCGACGCCTGTGCATGATCGTGGCAGAG < 41bp 0.842487966403793 0.485701230333773 0.040703356 0.010478377 prediction 0.684975932807585 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1550632 chr16:1550635 nonsynonymous SNV 0.634 4 24 hm5C_associated_SNPs_50362 0 0 0 0 1 TELO2 chr16:1550564 3'AG 1550564 Downstream 72bp
chr19 3543916 3543916 1 + A C rs575218949 3543912 + 3543892 3543932 41 TCGGCACCCCAGCGCCCGCCCGGCACCACCCAGAACTACCG TCGGCACCCCAGCGCCCGCCCGGCCCCACCCAGAACTACCG < 41bp 0.842465256653464 0.487161945726604 0.23312336 0.20426777 prediction 0.684930513306929 Functional Loss - C19orf71 ENSG00000183397 CDS Human protein_coding chr19:3543912 chr19:3543916 nonsynonymous SNV 0.011 2 25 hm5C_associated_SNPs_50363 0 0 0 0 1 C19orf71 chr19:3543827 3'AG 3543827 Downstream 90bp
chr12 132633409 132633409 1 + G T HNSC 132633406 + 132633386 132633426 41 CAGCTGGCGCAGCCCACGCTCATGATCGACTTCCTCACCCG CAGCTGGCGCAGCCCACGCTCATTATCGACTTCCTCACCCG < 41bp 0.842442839572296 0.498970779645485 0.3928219 0.042577654 prediction 0.684885679144591 Functional Loss - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132633406 chr12:132633409 nonsynonymous SNV 0.898 1 24 hm5C_associated_SNPs_50364 0 0 0 0 2 NOC4L chr12:132633329 3'AG 132633329 Downstream 81bp
chr12 132633409 132633409 1 + G T HNSC 132633406 + 132633386 132633426 41 CAGCTGGCGCAGCCCACGCTCATGATCGACTTCCTCACCCG CAGCTGGCGCAGCCCACGCTCATTATCGACTTCCTCACCCG < 41bp 0.842442839572296 0.498970779645485 0.3928219 0.042577654 prediction 0.684885679144591 Functional Loss - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132633406 chr12:132633409 nonsynonymous SNV 0.898 1 24 hm5C_associated_SNPs_50364 0 0 0 0 2 NOC4L chr12:132633440 5'GT 132633440 Upstream 32bp
chr19 14065217 14065217 1 + G T UCEC 14065214 + 14065194 14065234 41 CCCCGGGTGTGCGTGTCCCTCAAGAACATTGTGGATGAGGA CCCCGGGTGTGCGTGTCCCTCAATAACATTGTGGATGAGGA < 41bp 0.84238691193146 0.490307945133569 0.6705514 0.31645614 prediction 0.684773823862919 Functional Loss - DCAF15 ENSG00000132017 CDS Human protein_coding chr19:14065214 chr19:14065217 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_50368 0 0 1 0 1 DCAF15 chr19:14065152 3'AG 14065152 Downstream 66bp
chr1 26507299 26507299 1 + G T UCEC 26507296 + 26507276 26507316 41 AGAGCATAGTCCAAGGCTGCCTGGGGGACTGTGCCAAGACC AGAGCATAGTCCAAGGCTGCCTGTGGGACTGTGCCAAGACC < 41bp 0.842316545243843 0.488809486061231 0.33480573 0.017260045 prediction 0.684633090487687 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26507296 chr1:26507299 nonsynonymous SNV 0.022 3 24 hm5C_associated_SNPs_50369 0 0 0 2 2 CNKSR1 chr1:26507206 3'AG 26507206 Downstream 94bp
chr1 26507299 26507299 1 + G T UCEC 26507296 + 26507276 26507316 41 AGAGCATAGTCCAAGGCTGCCTGGGGGACTGTGCCAAGACC AGAGCATAGTCCAAGGCTGCCTGTGGGACTGTGCCAAGACC < 41bp 0.842316545243843 0.488809486061231 0.33480573 0.017260045 prediction 0.684633090487687 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26507296 chr1:26507299 nonsynonymous SNV 0.022 3 24 hm5C_associated_SNPs_50369 0 0 0 2 2 CNKSR1 chr1:26507387 5'GT 26507387 Upstream 89bp
chr11 66373040 66373040 1 + G T UCEC 66373037 + 66373017 66373057 41 CGGGGAGGCCATCCCTTATCCAAGATCACAGGGAACTCCGG CGGGGAGGCCATCCCTTATCCAATATCACAGGGAACTCCGG < 41bp 0.854707652043468 0.512508028447487 0.811249 0.22212332 prediction 0.684399247191963 Functional Loss - CCS ENSG00000173992 CDS Human protein_coding chr11:66373037 chr11:66373040 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50371 0 0 1 1 2 CCS chr11:66372960 3'AG 66372960 Downstream 81bp
chr11 66373040 66373040 1 + G T UCEC 66373037 + 66373017 66373057 41 CGGGGAGGCCATCCCTTATCCAAGATCACAGGGAACTCCGG CGGGGAGGCCATCCCTTATCCAATATCACAGGGAACTCCGG < 41bp 0.854707652043468 0.512508028447487 0.811249 0.22212332 prediction 0.684399247191963 Functional Loss - CCS ENSG00000173992 CDS Human protein_coding chr11:66373037 chr11:66373040 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50371 0 0 1 1 2 CCS chr11:66373063 5'GT 66373063 Upstream 24bp
chr9 137967648 137967648 1 + A C ESCA 137967644 + 137967624 137967664 41 CCTGATGGGCACTGAACTCACTCAAGTACGTGCATCCAACG CCTGATGGGCACTGAACTCACTCACGTACGTGCATCCAACG < 41bp 0.842194945934807 0.486238144421685 0.13618833 0.08886188 prediction 0.684389891869615 Functional Loss - OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137967644 chr9:137967648 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_50372 0 0 0 0 1 OLFM1 chr9:137967648 5'GT 137967648 Upstream 1bp
chr11 69458005 69458005 1 + G T UCEC 69458002 + 69457982 69458022 41 ACCGACAACTCCATCCGGCCCGAGGAGCTGCTGGTAACCAC ACCGACAACTCCATCCGGCCCGATGAGCTGCTGGTAACCAC < 41bp 0.849948842062142 0.507756168404418 0.6948016 0.051144958 prediction 0.684385347315448 Functional Loss - CCND1 ENSG00000110092 CDS Human protein_coding chr11:69458002 chr11:69458005 nonsynonymous SNV 0.967 0 24 hm5C_associated_SNPs_50373 0 0 1 0 1 CCND1 chr11:69458014 5'GT 69458014 Upstream 10bp
chr3 111705808 111705808 1 + A C LGG 111705804 + 111705784 111705824 41 AGGGTGGCTTATGCTTCATGCTGCAATTGCACGACCAGAGA AGGGTGGCTTATGCTTCATGCTGCCATTGCACGACCAGAGA < 41bp 0.876393719494562 0.534280860930619 0.1249367 0.112910986 prediction 0.684225717127885 Functional Loss - ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111705804 chr3:111705808 synonymous SNV . 0 25 hm5C_associated_SNPs_50378 0 0 0 0 2 ABHD10 chr3:111705761 3'AG 111705761 Downstream 48bp
chr3 111705808 111705808 1 + A C LGG 111705804 + 111705784 111705824 41 AGGGTGGCTTATGCTTCATGCTGCAATTGCACGACCAGAGA AGGGTGGCTTATGCTTCATGCTGCCATTGCACGACCAGAGA < 41bp 0.876393719494562 0.534280860930619 0.1249367 0.112910986 prediction 0.684225717127885 Functional Loss - ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111705804 chr3:111705808 synonymous SNV . 0 25 hm5C_associated_SNPs_50378 0 0 0 0 2 ABHD10 chr3:111705898 5'GT 111705898 Upstream 91bp
chr9 126128327 126128327 1 + G T LUSC 126128324 + 126128304 126128344 41 ACGGGGGCACCCGTTGCCAGCTGGACCTCGACGAGTGCCAG ACGGGGGCACCCGTTGCCAGCTGTACCTCGACGAGTGCCAG < 41bp 0.841989783732417 0.495064844562666 0.28580695 0.18284261 prediction 0.683979567464833 Functional Loss - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126128324 chr9:126128327 nonsynonymous SNV 0.991 5 24 hm5C_associated_SNPs_50380 0 0 0 0 1 CRB2 chr9:126128391 5'GT 126128391 Upstream 65bp
chr2 238443261 238443261 1 + G T COAD 238443258 + 238443238 238443278 41 TGGAATGCCTGCTGACCTACCTGGAGAACACAGTTGTGCCT TGGAATGCCTGCTGACCTACCTGTAGAACACAGTTGTGCCT < 41bp 0.841929508787602 0.499425833889247 0.5200769 0.07806045 prediction 0.683859017575203 Functional Loss - MLPH ENSG00000115648 CDS Human protein_coding chr2:238443258 chr2:238443261 stopgain 0.009 0 24 hm5C_associated_SNPs_50383 0 0 0 0 2 MLPH chr2:238443207 3'AG 238443207 Downstream 55bp
chr2 238443261 238443261 1 + G T COAD 238443258 + 238443238 238443278 41 TGGAATGCCTGCTGACCTACCTGGAGAACACAGTTGTGCCT TGGAATGCCTGCTGACCTACCTGTAGAACACAGTTGTGCCT < 41bp 0.841929508787602 0.499425833889247 0.5200769 0.07806045 prediction 0.683859017575203 Functional Loss - MLPH ENSG00000115648 CDS Human protein_coding chr2:238443258 chr2:238443261 stopgain 0.009 0 24 hm5C_associated_SNPs_50383 0 0 0 0 2 MLPH chr2:238443290 5'GT 238443290 Upstream 30bp
chr16 57597831 57597831 1 + G T LUAD 57597828 + 57597808 57597848 41 GAGCTGACCCGGGACGCCTGCAAGACCCGCCCCAGGGAGCT GAGCTGACCCGGGACGCCTGCAATACCCGCCCCAGGGAGCT < 41bp 0.841814386218207 0.481470140830207 0.37017506 0.04466918 prediction 0.683628772436413 Functional Loss - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57597828 chr16:57597831 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_50387 0 0 0 0 2 ADGRG5 chr16:57597760 3'AG 57597760 Downstream 72bp
chr16 57597831 57597831 1 + G T LUAD 57597828 + 57597808 57597848 41 GAGCTGACCCGGGACGCCTGCAAGACCCGCCCCAGGGAGCT GAGCTGACCCGGGACGCCTGCAATACCCGCCCCAGGGAGCT < 41bp 0.841814386218207 0.481470140830207 0.37017506 0.04466918 prediction 0.683628772436413 Functional Loss - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57597828 chr16:57597831 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_50387 0 0 0 0 2 ADGRG5 chr16:57597891 5'GT 57597891 Upstream 61bp
chr2 233243731 233243731 1 + G T GBM 233243728 + 233243708 233243748 41 ACCGCGAGGCAGCCGAGGCCCTGGGTGCCGCCAAGAAGCTG ACCGCGAGGCAGCCGAGGCCCTGTGTGCCGCCAAGAAGCTG < 41bp 0.841764426260453 0.490025408315112 0.2796048 0.077072054 prediction 0.683528852520907 Functional Loss - ALPP ENSG00000163283 CDS Human protein_coding chr2:233243728 chr2:233243731 nonsynonymous SNV 0.264 3 24 hm5C_associated_SNPs_50389 0 0 0 0 2 ALPP chr2:233243681 3'AG 233243681 Downstream 51bp
chr2 233243731 233243731 1 + G T GBM 233243728 + 233243708 233243748 41 ACCGCGAGGCAGCCGAGGCCCTGGGTGCCGCCAAGAAGCTG ACCGCGAGGCAGCCGAGGCCCTGTGTGCCGCCAAGAAGCTG < 41bp 0.841764426260453 0.490025408315112 0.2796048 0.077072054 prediction 0.683528852520907 Functional Loss - ALPP ENSG00000163283 CDS Human protein_coding chr2:233243728 chr2:233243731 nonsynonymous SNV 0.264 3 24 hm5C_associated_SNPs_50389 0 0 0 0 2 ALPP chr2:233243797 5'GT 233243797 Upstream 67bp
chr16 31230652 31230652 1 + G T LUAD 31230649 + 31230629 31230669 41 GGGGGGCCGTGGGGGAGCAGCTGGGCAAGATGCGGGTGTTC GGGGGGCCGTGGGGGAGCAGCTGTGCAAGATGCGGGTGTTC < 41bp 0.862412226448384 0.520737444840589 0.88876307 0.88134444 prediction 0.68334956321559 Functional Loss - TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31230649 chr16:31230652 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_50391 0 0 1 0 1 TRIM72 chr16:31230610 3'AG 31230610 Downstream 43bp
chr20 19870240 19870240 1 + G T LIHC 19870237 + 19870217 19870257 41 CGGCGTGCAGTGGAGCCTCGCTGGGGGAAATGACAGCTTGG CGGCGTGCAGTGGAGCCTCGCTGTGGGAAATGACAGCTTGG < 41bp 0.841646917337703 0.483337587610117 0.906224 0.3227758 prediction 0.683293834675407 Functional Loss - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19870237 chr20:19870240 nonsynonymous SNV 0.870 1 24 hm5C_associated_SNPs_50392 0 0 0 0 1 RIN2 chr20:19870302 5'GT 19870302 Upstream 63bp
chr1 12066687 12066687 1 + G T LUSC 12066684 + 12066664 12066704 41 CAGGAGGAGTTCATGGTTTCCATGGTTACCGGCCTGGCCTC CAGGAGGAGTTCATGGTTTCCATTGTTACCGGCCTGGCCTC < 41bp 0.841645351446249 0.482456817868851 0.37100393 0.12015906 prediction 0.683290702892498 Functional Loss - MFN2 ENSG00000116688 CDS Human protein_coding chr1:12066684 chr1:12066687 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_50393 0 0 1 0 2 MFN2 chr1:12066595 3'AG 12066595 Downstream 93bp
chr1 12066687 12066687 1 + G T LUSC 12066684 + 12066664 12066704 41 CAGGAGGAGTTCATGGTTTCCATGGTTACCGGCCTGGCCTC CAGGAGGAGTTCATGGTTTCCATTGTTACCGGCCTGGCCTC < 41bp 0.841645351446249 0.482456817868851 0.37100393 0.12015906 prediction 0.683290702892498 Functional Loss - MFN2 ENSG00000116688 CDS Human protein_coding chr1:12066684 chr1:12066687 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_50393 0 0 1 0 2 MFN2 chr1:12066750 5'GT 12066750 Upstream 64bp
chr13 24465842 24465842 1 + A C rs377159288 24465838 + 24465818 24465858 41 GAAAGCACTTTTTGGCAAGACTAGAGTCTCACCGATTTTCC GAAAGCACTTTTTGGCAAGACTAGCGTCTCACCGATTTTCC < 41bp 0.866268754516308 0.52472847462256 0.108420074 0.063726276 prediction 0.683080559787497 Functional Loss - C1QTNF9B;PCOTH ENSG00000205863 CDS Human protein_coding chr13:24465838 chr13:24465842 synonymous SNV . 0 25 hm5C_associated_SNPs_50396 0 0 0 0 1 C1QTNF9B;PCOTH chr13:24465752 3'AG 24465752 Downstream 91bp
chr9 37761989 37761989 1 + G T UCEC 37761986 + 37761966 37762006 41 AGTCACCTGTGCTGCAGGGGCAAGAAGGCATCCTAGAGGAG AGTCACCTGTGCTGCAGGGGCAATAAGGCATCCTAGAGGAG < 41bp 0.850399417081435 0.508937750718356 0.43933523 0.3916945 prediction 0.682923332726159 Functional Loss - TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37761986 chr9:37761989 stopgain 0.009 0 24 hm5C_associated_SNPs_50398 0 0 0 0 1 TRMT10B chr9:37761900 3'AG 37761900 Downstream 90bp
chr1 32653571 32653571 1 + A C STAD 32653567 + 32653547 32653587 41 GTCCCCAGCTGGAGGAGCACCGGAATTCACAGAAGCAGATG GTCCCCAGCTGGAGGAGCACCGGACTTCACAGAAGCAGATG < 41bp 0.866353765343949 0.524899581625005 0.7744021 0.7589158 prediction 0.682908367437889 Functional Loss - TXLNA ENSG00000084652 CDS Human protein_coding chr1:32653567 chr1:32653571 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_50399 0 0 1 0 1 TXLNA chr1:32653555 3'AG 32653555 Downstream 17bp
chr2 200820959 200820959 1 + G T UCEC 200820956 + 200820936 200820976 41 TTCAGCATCACAGAGTTCTCCGAGGGAGCGAAGCAGGTTTG TTCAGCATCACAGAGTTCTCCGATGGAGCGAAGCAGGTTTG < 41bp 0.847867913686766 0.50644559632891 0.92078984 0.3625981 prediction 0.682844634715712 Functional Loss - MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200820956 chr2:200820959 nonsynonymous SNV 0.825 0 24 hm5C_associated_SNPs_50401 0 0 0 0 1 MAIP1 chr2:200820971 5'GT 200820971 Upstream 13bp
chr11 63990660 63990660 1 + A C BLCA 63990656 + 63990636 63990676 41 GGAATGTCAACTGGGACATCCGGCAGGTGGGCCCAGACCCA GGAATGTCAACTGGGACATCCGGCCGGTGGGCCCAGACCCA < 41bp 0.841371681685726 0.464121615056011 0.5431869 0.3217574 prediction 0.682743363371452 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63990656 chr11:63990660 nonsynonymous SNV 0.980 3 25 hm5C_associated_SNPs_50403 0 0 1 0 1 FERMT3 chr11:63990661 5'GT 63990661 Upstream 2bp
chr16 77859223 77859223 1 + G T UCEC 77859220 + 77859200 77859240 41 ACACCAGTGGAGTTTGTCTACAAGATCCCGGATGACATGAG ACACCAGTGGAGTTTGTCTACAATATCCCGGATGACATGAG < 41bp 0.841370645271399 0.499553284740946 0.25064164 0.09735426 prediction 0.682741290542799 Functional Loss - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77859220 chr16:77859223 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_50404 0 0 0 0 1 VAT1L chr16:77859143 3'AG 77859143 Downstream 81bp
chr19 2808314 2808314 1 + A C rs556378977 2808310 + 2808290 2808330 41 CTGCGGCAGGATGGGAGCCGCCAGATCGCCATCGCGGCCAT CTGCGGCAGGATGGGAGCCGCCAGCTCGCCATCGCGGCCAT < 41bp 0.841351730176166 0.490552972852192 0.7787902 0.29651782 prediction 0.682703460352332 Functional Loss - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2808310 chr19:2808314 nonsynonymous SNV 0.417 0 25 hm5C_associated_SNPs_50405 0 0 1 0 1 THOP1 chr19:2808241 3'AG 2808241 Downstream 74bp
chr12 113826320 113826320 1 + G T LUAD 113826317 + 113826297 113826337 41 CTGCTGGCGGCCAGCGGTCCCACGTGGGACCAGGTGCCCCC CTGCTGGCGGCCAGCGGTCCCACTTGGGACCAGGTGCCCCC < 41bp 0.841577466263021 0.50023856706484 0.22269425 0.018277436 prediction 0.682677798396363 Functional Loss - PLBD2 ENSG00000151176 CDS Human protein_coding chr12:113826317 chr12:113826320 synonymous SNV . 0 24 hm5C_associated_SNPs_50406 0 0 1 0 1 PLBD2 chr12:113826264 3'AG 113826264 Downstream 57bp
chr2 32983434 32983434 1 + G T UCEC 32983431 + 32983411 32983451 41 ACTGCTTGCTTGGAGATGTCCTCGGAGACCATTCTTGCTAT ACTGCTTGCTTGGAGATGTCCTCTGAGACCATTCTTGCTAT < 41bp 0.842908397686179 0.501590635559519 0.22352466 0.06954491 prediction 0.68263552425332 Functional Loss - TTC27 ENSG00000018699 CDS Human protein_coding chr2:32983431 chr2:32983434 stopgain 0.908 0 24 hm5C_associated_SNPs_50408 0 0 1 0 1 TTC27 chr2:32983359 3'AG 32983359 Downstream 76bp
chr1 15956969 15956969 1 + G T UCEC 15956966 + 15956946 15956986 41 TGGACAATCCAGCCTTGCTCCGAGATATGTTGCTGGCCAAC TGGACAATCCAGCCTTGCTCCGATATATGTTGCTGGCCAAC < 41bp 0.850467305914435 0.50915229405612 0.82406056 0.2559958 prediction 0.68263002371663 Functional Loss - DDI2 ENSG00000197312 CDS Human protein_coding chr1:15956966 chr1:15956969 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_50409 0 0 1 0 1 DDI2 chr1:15957056 5'GT 15957056 Upstream 88bp
chr1 8386070 8386070 1 + A C CESC 8386066 + 8386046 8386086 41 ACGTGTGCAGCCCCGCAGACCAGGACCGAGGCCTGAACATC ACGTGTGCAGCCCCGCAGACCAGGCCCGAGGCCTGAACATC < 41bp 0.864934356926571 0.523652986038076 0.52547467 0.35427123 prediction 0.682562741776991 Functional Loss - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8386066 chr1:8386070 nonsynonymous SNV 0.980 4 25 hm5C_associated_SNPs_50411 0 0 0 0 1 SLC45A1 chr1:8386102 5'GT 8386102 Upstream 33bp
chr12 58140483 58140483 1 + G T COAD 58140480 + 58140460 58140500 41 ACCTCACAACCCTGTATCAACAAGATTATGATTTCTGCACT ACCTCACAACCCTGTATCAACAATATTATGATTTCTGCACT < 41bp 0.841167650969746 0.498426583535156 0.23505846 0.13074923 prediction 0.682335301939492 Functional Loss - TSPAN31 ENSG00000135452 CDS Human protein_coding chr12:58140480 chr12:58140483 nonsynonymous SNV 0.613 2 24 hm5C_associated_SNPs_50418 0 0 1 0 1 TSPAN31 chr12:58140503 5'GT 58140503 Upstream 21bp
chr19 36237348 36237348 1 + G T LUSC 36237345 + 36237325 36237365 41 TTTGCTTTCCTGCCTTTTCTCTGGTTGGTCAACATCTTCTG TTTGCTTTCCTGCCTTTTCTCTGTTTGGTCAACATCTTCTG < 41bp 0.85497677110822 0.513814141456365 0.3292532 0.06186667 prediction 0.682325259303711 Functional Loss - PSENEN ENSG00000188223;ENSG00000205155 CDS Human other chr19:36237345 chr19:36237348 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_50419 0 0 1 0 2 PSENEN chr19:36237320 3'AG 36237320 Downstream 29bp
chr19 36237348 36237348 1 + G T LUSC 36237345 + 36237325 36237365 41 TTTGCTTTCCTGCCTTTTCTCTGGTTGGTCAACATCTTCTG TTTGCTTTCCTGCCTTTTCTCTGTTTGGTCAACATCTTCTG < 41bp 0.85497677110822 0.513814141456365 0.3292532 0.06186667 prediction 0.682325259303711 Functional Loss - PSENEN ENSG00000188223;ENSG00000205155 CDS Human other chr19:36237345 chr19:36237348 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_50419 0 0 1 0 2 PSENEN chr19:36237424 5'GT 36237424 Upstream 77bp
chr19 4359211 4359211 1 + G T BLCA 4359208 + 4359188 4359228 41 CCCCTGACCTCGTGAGGCTCCAGGAACCCTGGAGCCAGGAG CCCCTGACCTCGTGAGGCTCCAGTAACCCTGGAGCCAGGAG < 41bp 0.844473944133705 0.503375799360762 0.75074244 0.14750037 prediction 0.682196289545886 Functional Loss - MPND ENSG00000008382 CDS Human protein_coding chr19:4359208 chr19:4359211 stopgain 0.980 1 24 hm5C_associated_SNPs_50422 0 0 1 0 1 MPND chr19:4359160 3'AG 4359160 Downstream 52bp
chr12 121154483 121154483 1 + A C STAD 121154479 + 121154459 121154499 41 TGGAGACGTGGACATCAGCGCAGGACGTTTTGTCCGCTATC TGGAGACGTGGACATCAGCGCAGGCCGTTTTGTCCGCTATC < 41bp 0.858911952637407 0.517838870572047 0.7527963 0.66632736 prediction 0.68214616413072 Functional Loss - UNC119B ENSG00000175970 CDS Human protein_coding chr12:121154479 chr12:121154483 synonymous SNV . 0 25 hm5C_associated_SNPs_50425 0 0 1 0 2 UNC119B chr12:121154431 3'AG 121154431 Downstream 53bp
chr12 121154483 121154483 1 + A C STAD 121154479 + 121154459 121154499 41 TGGAGACGTGGACATCAGCGCAGGACGTTTTGTCCGCTATC TGGAGACGTGGACATCAGCGCAGGCCGTTTTGTCCGCTATC < 41bp 0.858911952637407 0.517838870572047 0.7527963 0.66632736 prediction 0.68214616413072 Functional Loss - UNC119B ENSG00000175970 CDS Human protein_coding chr12:121154479 chr12:121154483 synonymous SNV . 0 25 hm5C_associated_SNPs_50425 0 0 1 0 2 UNC119B chr12:121154542 5'GT 121154542 Upstream 60bp
chr2 24245354 24245354 1 + G T SARC 24245351 + 24245331 24245371 41 GTACACATGCCTCCCAGCTACACGACCACGTCCAGGGCCTG GTACACATGCCTCCCAGCTACACTACCACGTCCAGGGCCTG < 41bp 0.841072758142232 0.487768503295478 0.11543539 0.03211549 prediction 0.682145516284464 Functional Loss - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24245351 chr2:24245354 nonsynonymous SNV 0.038 1 24 hm5C_associated_SNPs_50426 0 0 1 0 2 MFSD2B chr2:24245303 3'AG 24245303 Downstream 52bp
chr2 24245354 24245354 1 + G T SARC 24245351 + 24245331 24245371 41 GTACACATGCCTCCCAGCTACACGACCACGTCCAGGGCCTG GTACACATGCCTCCCAGCTACACTACCACGTCCAGGGCCTG < 41bp 0.841072758142232 0.487768503295478 0.11543539 0.03211549 prediction 0.682145516284464 Functional Loss - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24245351 chr2:24245354 nonsynonymous SNV 0.038 1 24 hm5C_associated_SNPs_50426 0 0 1 0 2 MFSD2B chr2:24245386 5'GT 24245386 Upstream 33bp
chr1 1387472 1387472 1 + A C UCEC 1387468 + 1387448 1387488 41 GGAAGCAGGAGGAGTCCGTGCAGAAGCACCATCAGACCTTC GGAAGCAGGAGGAGTCCGTGCAGACGCACCATCAGACCTTC < 41bp 0.841016958940511 0.476592258261283 0.31682333 0.2865126 prediction 0.682033917881022 Functional Loss - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1387468 chr1:1387472 nonsynonymous SNV 0.516 3 25 hm5C_associated_SNPs_50428 0 0 0 0 2 ATAD3C chr1:1387426 3'AG 1387426 Downstream 47bp
chr1 1387472 1387472 1 + A C UCEC 1387468 + 1387448 1387488 41 GGAAGCAGGAGGAGTCCGTGCAGAAGCACCATCAGACCTTC GGAAGCAGGAGGAGTCCGTGCAGACGCACCATCAGACCTTC < 41bp 0.841016958940511 0.476592258261283 0.31682333 0.2865126 prediction 0.682033917881022 Functional Loss - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1387468 chr1:1387472 nonsynonymous SNV 0.516 3 25 hm5C_associated_SNPs_50428 0 0 0 0 2 ATAD3C chr1:1387502 5'GT 1387502 Upstream 31bp
chr11 65617686 65617686 1 + G T CESC 65617683 + 65617663 65617703 41 GAAAAGCTACAGAAATTGGGCGAGGGGGACAGCTCTGTCAC GAAAAGCTACAGAAATTGGGCGATGGGGACAGCTCTGTCAC < 41bp 0.860323759861504 0.519317163442581 0.90687406 0.5528414 prediction 0.682013192837846 Functional Loss - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65617683 chr11:65617686 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_50429 0 0 0 1 1 SNX32 chr11:65617621 3'AG 65617621 Downstream 66bp
chr15 65219136 65219136 1 + G T HNSC 65219133 + 65219113 65219153 41 CGTTTCACAGGGCAGCTGAGCACGGGCAGCTGGATGCTCTG CGTTTCACAGGGCAGCTGAGCACTGGCAGCTGGATGCTCTG < 41bp 0.862825316922438 0.521867349500384 0.88846385 0.68526673 prediction 0.681915934844109 Functional Loss - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65219133 chr15:65219136 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_50432 0 0 0 0 2 ANKDD1A chr15:65219100 3'AG 65219100 Downstream 37bp
chr15 65219136 65219136 1 + G T HNSC 65219133 + 65219113 65219153 41 CGTTTCACAGGGCAGCTGAGCACGGGCAGCTGGATGCTCTG CGTTTCACAGGGCAGCTGAGCACTGGCAGCTGGATGCTCTG < 41bp 0.862825316922438 0.521867349500384 0.88846385 0.68526673 prediction 0.681915934844109 Functional Loss - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65219133 chr15:65219136 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_50432 0 0 0 0 2 ANKDD1A chr15:65219198 5'GT 65219198 Upstream 63bp
chr1 110766493 110766493 1 + A C SKCM 110766489 + 110766469 110766509 41 GTGATACCAGCCCCCCTGCCCGGGAAGAGGGTATGATCGAG GTGATACCAGCCCCCCTGCCCGGGCAGAGGGTATGATCGAG < 41bp 0.840943066249216 0.483494550263785 0.53203267 0.5881197 prediction 0.681886132498432 Functional Loss - KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110766489 chr1:110766493 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_50434 0 0 0 0 1 KCNC4 chr1:110766522 5'GT 110766522 Upstream 30bp
chr1 234509501 234509501 1 + G T LUSC 234509498 + 234509478 234509518 41 GTCCCTTACTGTCCCCGAGCCGCGGGTTCCTCTTGTGCAAA GTCCCTTACTGTCCCCGAGCCGCTGGTTCCTCTTGTGCAAA < 41bp 0.840916065030733 0.495790923970364 0.8939084 0.2145355 prediction 0.681832130061465 Functional Loss - COA6 ENSG00000168275 CDS Human protein_coding chr1:234509498 chr1:234509501 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_50435 0 0 0 0 1 COA6 chr1:234509586 5'GT 234509586 Upstream 86bp
chr12 56551301 56551301 1 + G T UCEC 56551298 + 56551278 56551318 41 GAGACCGTTCTGGCAGGACACGAGGACAGCAACGGCTGCAT GAGACCGTTCTGGCAGGACACGATGACAGCAACGGCTGCAT < 41bp 0.846759188250456 0.50593676115533 0.8920372 0.19629285 prediction 0.681644854190252 Functional Loss - MYL6B ENSG00000196465 CDS Human protein_coding chr12:56551298 chr12:56551301 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_50437 0 0 1 0 1 MYL6B chr12:56551252 3'AG 56551252 Downstream 50bp
chr14 51057742 51057742 1 + A C UCS 51057738 + 51057718 51057758 41 TGGATCTGAGCGAGAGACCACAGGAATTCAGATATGGAGTG TGGATCTGAGCGAGAGACCACAGGCATTCAGATATGGAGTG < 41bp 0.856503888029344 0.515707913887558 0.7670667 0.35437626 prediction 0.681591948283572 Functional Loss - ATL1 ENSG00000198513 CDS Human protein_coding chr14:51057738 chr14:51057742 synonymous SNV . 0 25 hm5C_associated_SNPs_50438 0 0 1 0 2 ATL1 chr14:51057659 3'AG 51057659 Downstream 84bp
chr14 51057742 51057742 1 + A C UCS 51057738 + 51057718 51057758 41 TGGATCTGAGCGAGAGACCACAGGAATTCAGATATGGAGTG TGGATCTGAGCGAGAGACCACAGGCATTCAGATATGGAGTG < 41bp 0.856503888029344 0.515707913887558 0.7670667 0.35437626 prediction 0.681591948283572 Functional Loss - ATL1 ENSG00000198513 CDS Human protein_coding chr14:51057738 chr14:51057742 synonymous SNV . 0 25 hm5C_associated_SNPs_50438 0 0 1 0 2 ATL1 chr14:51057793 5'GT 51057793 Upstream 52bp
chr19 50983931 50983931 1 + G T LIHC 50983928 + 50983908 50983948 41 GCGTGTCGGTGGTGACGCACCCCGGGGGCTGCCGGGGCCAT GCGTGTCGGTGGTGACGCACCCCTGGGGCTGCCGGGGCCAT < 41bp 0.847267385235645 0.506538515664532 0.3576813 0.09739575 prediction 0.681457739142227 Functional Loss - EMC10 ENSG00000161671 CDS Human protein_coding chr19:50983928 chr19:50983931 nonsynonymous SNV 0.740 4 24 hm5C_associated_SNPs_50441 0 0 0 0 1 EMC10 chr19:50983838 3'AG 50983838 Downstream 94bp
chrX 153608673 153608673 1 + G T LUAD 153608670 + 153608650 153608690 41 CCCGAGTCTGCCGGCCCGTCCAGGGCTGTCCGCCAGTCAGT CCCGAGTCTGCCGGCCCGTCCAGTGCTGTCCGCCAGTCAGT < 41bp 0.877752677433979 0.537062063226891 0.92549837 0.46659613 prediction 0.681381228414175 Functional Loss - EMD ENSG00000102119 CDS Human protein_coding chrX:153608670 chrX:153608673 nonsynonymous SNV 0.584 2 24 hm5C_associated_SNPs_50443 0 0 1 0 2 EMD chrX:153608594 3'AG 153608594 Downstream 80bp
chrX 153608673 153608673 1 + G T LUAD 153608670 + 153608650 153608690 41 CCCGAGTCTGCCGGCCCGTCCAGGGCTGTCCGCCAGTCAGT CCCGAGTCTGCCGGCCCGTCCAGTGCTGTCCGCCAGTCAGT < 41bp 0.877752677433979 0.537062063226891 0.92549837 0.46659613 prediction 0.681381228414175 Functional Loss - EMD ENSG00000102119 CDS Human protein_coding chrX:153608670 chrX:153608673 nonsynonymous SNV 0.584 2 24 hm5C_associated_SNPs_50443 0 0 1 0 2 EMD chrX:153608727 5'GT 153608727 Upstream 55bp
chr1 146765320 146765320 1 + A C HNSC 146765316 + 146765296 146765336 41 CCTTGATTGTGGCTCAGCATCGTGATCGTTCCAATGTCCTG CCTTGATTGTGGCTCAGCATCGTGCTCGTTCCAATGTCCTG < 41bp 0.840678731932683 0.496258612177692 0.42871964 0.44170237 prediction 0.681357463865365 Functional Loss - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146765316 chr1:146765320 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_50444 0 0 1 0 2 CHD1L chr1:146765292 3'AG 146765292 Downstream 29bp
chr1 146765320 146765320 1 + A C HNSC 146765316 + 146765296 146765336 41 CCTTGATTGTGGCTCAGCATCGTGATCGTTCCAATGTCCTG CCTTGATTGTGGCTCAGCATCGTGCTCGTTCCAATGTCCTG < 41bp 0.840678731932683 0.496258612177692 0.42871964 0.44170237 prediction 0.681357463865365 Functional Loss - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146765316 chr1:146765320 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_50444 0 0 1 0 2 CHD1L chr1:146765406 5'GT 146765406 Upstream 87bp
chrX 48649530 48649530 1 + G T UCEC 48649527 + 48649507 48649547 41 CAGAGGCTCCATGGAGTTCCCTGGCCTGGGGTCCCTGGGGA CAGAGGCTCCATGGAGTTCCCTGTCCTGGGGTCCCTGGGGA < 41bp 0.840635749479742 0.48822556351608 0.3704514 0.21697173 prediction 0.681271498959483 Functional Loss - GATA1 ENSG00000102145 CDS Human protein_coding chrX:48649527 chrX:48649530 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_50448 0 0 1 0 1 GATA1 chrX:48649498 3'AG 48649498 Downstream 33bp
chr9 135862164 135862164 1 + G T LUSC 135862161 + 135862141 135862181 41 CTCTGGCCTCCTGCCCTTACCCCGGGTGAGTCAGAGCCCGG CTCTGGCCTCCTGCCCTTACCCCTGGTGAGTCAGAGCCCGG < 41bp 0.840629500074927 0.49781336579184 0.8890149 0.23929688 prediction 0.681259000149854 Functional Loss - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135862161 chr9:135862164 synonymous SNV . 0 24 hm5C_associated_SNPs_50449 0 0 1 0 1 GFI1B chr9:135862165 5'GT 135862165 Upstream 2bp
chr1 207850821 207850821 1 + A C UCEC 207850817 + 207850797 207850837 41 AGTTTCCCATTGGGACATATCTGAACTATGAATGCCGCCCT AGTTTCCCATTGGGACATATCTGACCTATGAATGCCGCCCT < 41bp 0.864261841359358 0.523648127537601 0.31009454 0.37119728 prediction 0.681227427643515 Functional Loss - CR1L ENSG00000197721 CDS Human protein_coding chr1:207850817 chr1:207850821 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_50450 0 0 0 0 1 CR1L chr1:207850913 5'GT 207850913 Upstream 93bp
chr16 9197114 9197114 1 + A C LUAD 9197110 + 9197090 9197130 41 CCTTCCGGGAAGCCATAGCTCTGCATGGTAAAGCCGTTTAA CCTTCCGGGAAGCCATAGCTCTGCCTGGTAAAGCCGTTTAA < 41bp 0.877543107143844 0.536951246751298 0.13793266 0.16105539 prediction 0.681183720785092 Functional Loss - C16orf72 ENSG00000182831 CDS Human protein_coding chr16:9197110 chr16:9197114 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_50451 0 0 1 0 1 C16orf72 chr16:9197116 5'GT 9197116 Upstream 3bp
chr12 56629383 56629383 1 + G T LGG 56629380 + 56629360 56629400 41 ACGCAGGACCTGGCGGACTACCAGAGAAGGACCTGGGCCCG ACGCAGGACCTGGCGGACTACCATAGAAGGACCTGGGCCCG < 41bp 0.854442577603738 0.513853366338104 0.87698054 0.60168946 prediction 0.681178422531268 Functional Loss - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56629380 chr12:56629383 stopgain 0.908 0 24 hm5C_associated_SNPs_50452 0 0 1 0 1 SLC39A5 chr12:56629344 3'AG 56629344 Downstream 40bp
chr13 114288331 114288331 1 + G T LUAD 114288328 + 114288308 114288348 41 GTCTGCCCACCAACTCGGCTCAGGAATGTCAGAACTTAGAG GTCTGCCCACCAACTCGGCTCAGTAATGTCAGAACTTAGAG < 41bp 0.851476604056516 0.510941929414407 0.30631286 0.10492289 prediction 0.681069349284217 Functional Loss - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114288328 chr13:114288331 stopgain 0.981 1 24 hm5C_associated_SNPs_50454 0 0 0 0 1 TFDP1 chr13:114288348 5'GT 114288348 Upstream 18bp
chr14 24108557 24108557 1 + G T LUAD 24108554 + 24108534 24108574 41 AGGCTGAGGACCGGGAGCAGCTGGTGGCCAAGGTGAGGGGG AGGCTGAGGACCGGGAGCAGCTGTTGGCCAAGGTGAGGGGG < 41bp 0.844989311477767 0.504459628430377 0.66514695 0.34657386 prediction 0.681059366094779 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24108554 chr14:24108557 nonsynonymous SNV 0.221 1 24 hm5C_associated_SNPs_50455 0 0 1 0 1 DHRS2 chr14:24108565 5'GT 24108565 Upstream 9bp
chr6 97052739 97052739 1 + G T LUSC 97052736 + 97052716 97052756 41 AAGGATGAGCGCCTGCTGTGCACGGAGTGCTATTCTAACGA AAGGATGAGCGCCTGCTGTGCACTGAGTGCTATTCTAACGA < 41bp 0.854041731882941 0.513570954687714 0.15055582 0.04351753 prediction 0.680941554390453 Functional Loss - FHL5 ENSG00000112214 CDS Human protein_coding chr6:97052736 chr6:97052739 synonymous SNV . 0 24 hm5C_associated_SNPs_50459 0 0 0 0 1 FHL5 chr6:97052800 5'GT 97052800 Upstream 62bp
chr16 27459912 27459912 1 + G T GBM 27459909 + 27459889 27459929 41 TGGAGCTGGGACCCTGGAGCCCAGAGGTGCCCTCCACCCTG TGGAGCTGGGACCCTGGAGCCCATAGGTGCCCTCCACCCTG < 41bp 0.853984490282458 0.513515717390967 0.5919141 0.2985072 prediction 0.680937545782982 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27459909 chr16:27459912 stopgain 0.001 0 24 hm5C_associated_SNPs_50460 0 0 0 0 1 IL21R chr16:27459855 3'AG 27459855 Downstream 58bp
chr3 112998289 112998289 1 + G T LUSC 112998286 + 112998266 112998306 41 TCGCGGCTGTCCGTGGAGATCACGGGCCTAGAGAAAGGTAG TCGCGGCTGTCCGTGGAGATCACTGGCCTAGAGAAAGGTAG < 41bp 0.840461662816314 0.497637681729817 0.8597001 0.36748323 prediction 0.680923325632629 Functional Loss - BOC ENSG00000144857 CDS Human protein_coding chr3:112998286 chr3:112998289 synonymous SNV . 0 24 hm5C_associated_SNPs_50463 0 0 0 0 1 BOC chr3:112998302 5'GT 112998302 Upstream 14bp
chr11 66189940 66189940 1 + G T UCEC 66189937 + 66189917 66189957 41 TCCAGGTGGACCTGGTTGCCCAGGGTGACAGCATCTACGAC TCCAGGTGGACCTGGTTGCCCAGTGTGACAGCATCTACGAC < 41bp 0.840421553794126 0.476859153320041 0.6983727 0.17314008 prediction 0.680843107588253 Functional Loss - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66189937 chr11:66189940 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50466 0 0 0 0 2 NPAS4 chr11:66189922 3'AG 66189922 Downstream 19bp
chr11 66189940 66189940 1 + G T UCEC 66189937 + 66189917 66189957 41 TCCAGGTGGACCTGGTTGCCCAGGGTGACAGCATCTACGAC TCCAGGTGGACCTGGTTGCCCAGTGTGACAGCATCTACGAC < 41bp 0.840421553794126 0.476859153320041 0.6983727 0.17314008 prediction 0.680843107588253 Functional Loss - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66189937 chr11:66189940 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50466 0 0 0 0 2 NPAS4 chr11:66190024 5'GT 66190024 Upstream 85bp
chr19 10747196 10747196 1 + G T LUAD 10747193 + 10747173 10747213 41 GGGGCCTTTGCCTCCTACTACTGGGCCCTGCGCAAGCCGGA GGGGCCTTTGCCTCCTACTACTGTGCCCTGCGCAAGCCGGA < 41bp 0.849186575376841 0.508808935424988 0.2804777 0.14330557 prediction 0.680755279903705 Functional Loss - SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10747193 chr19:10747196 nonsynonymous SNV 0.984 4 24 hm5C_associated_SNPs_50467 0 0 0 0 1 SLC44A2 chr19:10747261 5'GT 10747261 Upstream 66bp
chr7 31013718 31013718 1 + G T UCEC 31013715 + 31013695 31013735 41 GGCCTCCACCTCCCCCAGCTCAAGGAGAGCCTTCTGGTGGC GGCCTCCACCTCCCCCAGCTCAATGAGAGCCTTCTGGTGGC < 41bp 0.864990432477015 0.524615713771037 0.88821256 0.17824644 prediction 0.680749437411955 Functional Loss - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31013715 chr7:31013718 nonsynonymous SNV 0.061 3 24 hm5C_associated_SNPs_50468 0 0 0 0 1 GHRHR chr7:31013753 5'GT 31013753 Upstream 36bp
chr7 99700524 99700524 1 + G T STAD 99700521 + 99700501 99700541 41 TGGGCGATTACTGTGGCTCCCTGGGCGAGGGGACCATCTCC TGGGCGATTACTGTGGCTCCCTGTGCGAGGGGACCATCTCC < 41bp 0.861633942204181 0.521282968135975 0.15815982 0.033983916 prediction 0.680701948136412 Functional Loss - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99700521 chr7:99700524 nonsynonymous SNV 0.544 1 24 hm5C_associated_SNPs_50469 0 0 0 0 3 AP4M1 chr7:99700487 3'AG 99700487 Downstream 38bp
chr7 99700524 99700524 1 + G T STAD 99700521 + 99700501 99700541 41 TGGGCGATTACTGTGGCTCCCTGGGCGAGGGGACCATCTCC TGGGCGATTACTGTGGCTCCCTGTGCGAGGGGACCATCTCC < 41bp 0.861633942204181 0.521282968135975 0.15815982 0.033983916 prediction 0.680701948136412 Functional Loss - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99700521 chr7:99700524 nonsynonymous SNV 0.544 1 24 hm5C_associated_SNPs_50469 0 0 0 0 3 AP4M1 chr7:99700556 5'GT 99700556 Upstream 33bp
chr7 99700524 99700524 1 + G T STAD 99700521 + 99700501 99700541 41 TGGGCGATTACTGTGGCTCCCTGGGCGAGGGGACCATCTCC TGGGCGATTACTGTGGCTCCCTGTGCGAGGGGACCATCTCC < 41bp 0.861633942204181 0.521282968135975 0.15815982 0.033983916 prediction 0.680701948136412 Functional Loss - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99700521 chr7:99700524 nonsynonymous SNV 0.544 1 24 hm5C_associated_SNPs_50469 0 0 0 0 3 AP4M1 chr7:99700583 5'GT 99700583 Upstream 60bp
chr2 239003163 239003163 1 + G T LUAD 239003160 + 239003140 239003180 41 CCATCCGGGGACCCCGGCTTCAAGGTGATGGCCCCTCACCC CCATCCGGGGACCCCGGCTTCAATGTGATGGCCCCTCACCC < 41bp 0.840343483772556 0.474358214747563 0.89393044 0.37075114 prediction 0.680686967545112 Functional Loss - SCLY ENSG00000132330 CDS Human protein_coding chr2:239003160 chr2:239003163 nonsynonymous SNV 0.858 4 24 hm5C_associated_SNPs_50471 0 0 1 0 1 SCLY chr2:239003163 5'GT 239003163 Upstream 1bp
chr12 68043612 68043612 1 + G T STAD 68043609 + 68043589 68043629 41 ACAGCGCCGTTCGTCAGCTTCAGGCTTCCCCGGGGCTCGGT ACAGCGCCGTTCGTCAGCTTCAGTCTTCCCCGGGGCTCGGT < 41bp 0.849205377282349 0.508867135474195 0.9149964 0.8813975 prediction 0.680676483616308 Functional Loss - DYRK2 ENSG00000127334 CDS Human protein_coding chr12:68043609 chr12:68043612 nonsynonymous SNV 0.981 0 24 hm5C_associated_SNPs_50472 0 0 1 0 1 DYRK2 chr12:68043577 3'AG 68043577 Downstream 36bp
chr3 8609165 8609165 1 + G T SARC 8609162 + 8609142 8609182 41 ACTACCAGCGTGTGGAAGATCTGGCCTGGCACCGAAAGCAC ACTACCAGCGTGTGGAAGATCTGTCCTGGCACCGAAAGCAC < 41bp 0.840334496355728 0.491475454233217 0.19682544 0.059860945 prediction 0.680668992711456 Functional Loss - LMCD1 ENSG00000071282 CDS Human protein_coding chr3:8609162 chr3:8609165 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50473 0 0 0 0 1 LMCD1 chr3:8609126 3'AG 8609126 Downstream 40bp
chr19 804112 804112 1 + G T PRAD 804109 + 804089 804129 41 CCCTCTAGAGTGATCCACATCCGGAAGCTCCCCATCGACGT CCCTCTAGAGTGATCCACATCCGTAAGCTCCCCATCGACGT < 41bp 0.840271789201743 0.477684217040009 0.7989419 0.16691455 prediction 0.680543578403485 Functional Loss - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804109 chr19:804112 synonymous SNV . 0 24 hm5C_associated_SNPs_50474 0 0 1 0 2 PTBP1 chr19:804036 3'AG 804036 Downstream 77bp
chr19 804112 804112 1 + G T PRAD 804109 + 804089 804129 41 CCCTCTAGAGTGATCCACATCCGGAAGCTCCCCATCGACGT CCCTCTAGAGTGATCCACATCCGTAAGCTCCCCATCGACGT < 41bp 0.840271789201743 0.477684217040009 0.7989419 0.16691455 prediction 0.680543578403485 Functional Loss - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804109 chr19:804112 synonymous SNV . 0 24 hm5C_associated_SNPs_50474 0 0 1 0 2 PTBP1 chr19:804208 5'GT 804208 Upstream 97bp
chr5 95194594 95194594 1 + A C ESCA 95194590 + 95194570 95194610 41 TTCAGGCTGCTGCTCCATCGCATGAATTCCAGCAGGTGGCG TTCAGGCTGCTGCTCCATCGCATGCATTCCAGCAGGTGGCG < 41bp 0.842458985848351 0.502192430623284 0.17587131 0.12702656 prediction 0.680533110450134 Functional Loss - LINC01554 ENSG00000236882 CDS Human lincRNA chr5:95194590 chr5:95194594 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_50475 0 0 0 0 1 LINC01554 chr5:95194508 3'AG 95194508 Downstream 87bp
chr17 78039385 78039385 1 + G T STAD 78039382 + 78039362 78039402 41 AAGCACCGCGACGAGGCGCACAGGGCGGTGCTGGAGGCGCT AAGCACCGCGACGAGGCGCACAGTGCGGTGCTGGAGGCGCT < 41bp 0.840247476406273 0.484412482551954 0.89257836 0.4192998 prediction 0.680494952812546 Functional Loss - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78039382 chr17:78039385 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_50477 0 0 0 0 1 CCDC40 chr17:78039405 5'GT 78039405 Upstream 21bp
chr19 58196753 58196753 1 + G T LUAD 58196750 + 58196730 58196770 41 ACTTTGCACATGTAACATCCCTGGGTAAGGCCCTAGCATCC ACTTTGCACATGTAACATCCCTGTGTAAGGCCCTAGCATCC < 41bp 0.840164878415691 0.497303899221936 0.71271485 0.10342321 prediction 0.680329756831382 Functional Loss - ZNF551 ENSG00000204519 CDS Human protein_coding chr19:58196750 chr19:58196753 nonsynonymous SNV 0.442 2 24 hm5C_associated_SNPs_50482 0 0 1 0 1 ZNF551 chr19:58196753 5'GT 58196753 Upstream 1bp
chr14 29242597 29242597 1 + G T UCEC 29242594 + 29242574 29242614 41 TGAGGTTGTCCGAAGGATGCCGAGGAAAAGGATATCAGGAC TGAGGTTGTCCGAAGGATGCCGATGAAAAGGATATCAGGAC < 41bp 0.840107253684303 0.491261607541649 0.42271888 0.29439265 prediction 0.680214507368607 Functional Loss - LINC01551 ENSG00000186960 CDS Human lincRNA chr14:29242594 chr14:29242597 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_50486 0 0 0 0 2 LINC01551 chr14:29242566 3'AG 29242566 Downstream 32bp
chr14 29242597 29242597 1 + G T UCEC 29242594 + 29242574 29242614 41 TGAGGTTGTCCGAAGGATGCCGAGGAAAAGGATATCAGGAC TGAGGTTGTCCGAAGGATGCCGATGAAAAGGATATCAGGAC < 41bp 0.840107253684303 0.491261607541649 0.42271888 0.29439265 prediction 0.680214507368607 Functional Loss - LINC01551 ENSG00000186960 CDS Human lincRNA chr14:29242594 chr14:29242597 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_50486 0 0 0 0 2 LINC01551 chr14:29242639 5'GT 29242639 Upstream 43bp
chr19 36276202 36276202 1 + G T SARC 36276199 + 36276179 36276219 41 CCTCGAAAGAAGCCCCTGCCCTGGCTGGGGGGCACCCGTGC CCTCGAAAGAAGCCCCTGCCCTGTCTGGGGGGCACCCGTGC < 41bp 0.849164311469003 0.509064648656264 0.093280345 0.044353694 prediction 0.680199325625478 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36276199 chr19:36276202 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50487 0 0 1 0 1 ARHGAP33 chr19:36276236 5'GT 36276236 Upstream 35bp
chr9 113530333 113530333 1 + G T COAD 113530330 + 113530310 113530350 41 CATCTTCCAGGAGTGCAGTCCTGGAGTAGTGCCTACTCCTA CATCTTCCAGGAGTGCAGTCCTGTAGTAGTGCCTACTCCTA < 41bp 0.840050866734927 0.498560841828708 0.4925679 0.18612108 prediction 0.680101733469853 Functional Loss - MUSK ENSG00000030304 CDS Human protein_coding chr9:113530330 chr9:113530333 nonsynonymous SNV 0.729 1 24 hm5C_associated_SNPs_50492 0 0 0 0 1 MUSK chr9:113530363 5'GT 113530363 Upstream 31bp
chr20 37536822 37536822 1 + G T KIRP 37536819 + 37536799 37536839 41 TCAGGGAGACCAGGACAGACCAAGAGAATAAGGACCCTGTG TCAGGGAGACCAGGACAGACCAATAGAATAAGGACCCTGTG < 41bp 0.848063569884528 0.508014830699856 0.8351677 0.78216743 prediction 0.680097478369343 Functional Loss - PPP1R16B ENSG00000101445 CDS Human protein_coding chr20:37536819 chr20:37536822 stopgain 1.000 1 24 hm5C_associated_SNPs_50493 0 0 0 0 1 PPP1R16B chr20:37536836 5'GT 37536836 Upstream 15bp
chr22 35785924 35785924 1 + G T UCEC 35785921 + 35785901 35785941 41 CCAGAGCCCCTCACGGGCACCAGGGCTTCGCCAGCGGGCCA CCAGAGCCCCTCACGGGCACCAGTGCTTCGCCAGCGGGCCA < 41bp 0.863955531974665 0.523976549985595 0.9006871 0.20583975 prediction 0.679957963978139 Functional Loss - HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35785921 chr22:35785924 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_50498 0 0 1 0 2 HMOX1 chr22:35785857 3'AG 35785857 Downstream 68bp
chr22 35785924 35785924 1 + G T UCEC 35785921 + 35785901 35785941 41 CCAGAGCCCCTCACGGGCACCAGGGCTTCGCCAGCGGGCCA CCAGAGCCCCTCACGGGCACCAGTGCTTCGCCAGCGGGCCA < 41bp 0.863955531974665 0.523976549985595 0.9006871 0.20583975 prediction 0.679957963978139 Functional Loss - HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35785921 chr22:35785924 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_50498 0 0 1 0 2 HMOX1 chr22:35785956 5'GT 35785956 Upstream 33bp
chr3 193855566 193855566 1 + G T CESC 193855563 + 193855543 193855583 41 ACCCGCTTCCTGTCCACGTGCGAGGGCGTTAATACCGAGGT ACCCGCTTCCTGTCCACGTGCGATGGCGTTAATACCGAGGT < 41bp 0.839917624935893 0.490215049842212 0.9155406 0.16119331 prediction 0.679835249871786 Functional Loss - HES1 ENSG00000114315 CDS Human protein_coding chr3:193855563 chr3:193855566 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_50499 0 0 1 0 1 HES1 chr3:193855472 3'AG 193855472 Downstream 95bp
chr2 233537115 233537115 1 + G T UCEC 233537112 + 233537092 233537132 41 TTTCTGAGATCGATGTGGCCCTGGAGGGTGTCAAAGGTGCC TTTCTGAGATCGATGTGGCCCTGTAGGGTGTCAAAGGTGCC < 41bp 0.839917082135241 0.496360872301916 0.24358901 0.13673872 prediction 0.679834164270482 Functional Loss - EFHD1 ENSG00000115468 CDS Human protein_coding chr2:233537112 chr2:233537115 stopgain 0.532 1 24 hm5C_associated_SNPs_50500 0 0 0 0 2 EFHD1 chr2:233537019 3'AG 233537019 Downstream 97bp
chr2 233537115 233537115 1 + G T UCEC 233537112 + 233537092 233537132 41 TTTCTGAGATCGATGTGGCCCTGGAGGGTGTCAAAGGTGCC TTTCTGAGATCGATGTGGCCCTGTAGGGTGTCAAAGGTGCC < 41bp 0.839917082135241 0.496360872301916 0.24358901 0.13673872 prediction 0.679834164270482 Functional Loss - EFHD1 ENSG00000115468 CDS Human protein_coding chr2:233537112 chr2:233537115 stopgain 0.532 1 24 hm5C_associated_SNPs_50500 0 0 0 0 2 EFHD1 chr2:233537153 5'GT 233537153 Upstream 39bp
chr2 178977516 178977516 1 + G T LUAD 178977513 + 178977493 178977533 41 GCCCGCAGCTCACAGGCCTGCAGGGCCATGGAGGAGATGCA GCCCGCAGCTCACAGGCCTGCAGTGCCATGGAGGAGATGCA < 41bp 0.841082566729457 0.501173533754755 0.7225936 0.31416127 prediction 0.679818065949404 Functional Loss - RBM45 ENSG00000155636 CDS Human protein_coding chr2:178977513 chr2:178977516 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_50501 0 0 1 0 1 RBM45 chr2:178977573 5'GT 178977573 Upstream 58bp
chr8 146278031 146278031 1 + G T HNSC 146278028 + 146278008 146278048 41 CCAGGCCCGGGTACTCCCTGCGCGTCCCGCGGAGCCCGGCT CCAGGCCCGGGTACTCCCTGCGCTTCCCGCGGAGCCCGGCT < 41bp 0.83990343663482 0.492002156636262 0.30733168 0.27268356 prediction 0.679806873269641 Functional Loss - C8orf33 ENSG00000182307 CDS Human protein_coding chr8:146278028 chr8:146278031 synonymous SNV . 0 24 hm5C_associated_SNPs_50503 0 0 1 0 1 C8orf33 chr8:146277972 3'AG 146277972 Downstream 60bp
chr19 56499243 56499243 1 + G T LUSC 56499240 + 56499220 56499260 41 ACTCCTCACCCACCCGACTTCACGGGAAAAAGTGACTGCCT ACTCCTCACCCACCCGACTTCACTGGAAAAAGTGACTGCCT < 41bp 0.843953928540642 0.504082965276811 0.3056645 0.17875642 prediction 0.679741926527662 Functional Loss - NLRP8 ENSG00000179709 CDS Human protein_coding chr19:56499240 chr19:56499243 synonymous SNV . 0 24 hm5C_associated_SNPs_50506 0 0 0 0 1 NLRP8 chr19:56499180 3'AG 56499180 Downstream 64bp
chr17 61557763 61557763 1 + G T ESCA 61557760 + 61557740 61557780 41 CCCCCACCTTCGAGGACGATCTGGAACACCTCTACCAACAG CCCCCACCTTCGAGGACGATCTGTAACACCTCTACCAACAG < 41bp 0.839863524611713 0.493150648787199 0.3230151 0.109350175 prediction 0.679727049223426 Functional Loss - ACE ENSG00000159640 CDS Human protein_coding chr17:61557760 chr17:61557763 stopgain 0.229 1 24 hm5C_associated_SNPs_50507 0 0 0 0 1 ACE chr17:61557698 3'AG 61557698 Downstream 66bp
chr5 157178418 157178418 1 + G T UCEC 157178415 + 157178395 157178435 41 CAGTGCACGAAGGCAGCCCTCTGGGTGAACTCCATCGCTGT CAGTGCACGAAGGCAGCCCTCTGTGTGAACTCCATCGCTGT < 41bp 0.861853823467195 0.521994843963839 0.92002773 0.31052354 prediction 0.679717959006712 Functional Loss - LSM11 ENSG00000155858 CDS Human protein_coding chr5:157178415 chr5:157178418 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50508 0 0 1 0 1 LSM11 chr5:157178398 3'AG 157178398 Downstream 21bp
chr7 141351333 141351333 1 + A C COAD 141351329 + 141351309 141351349 41 TTTCCTGTGCTCACAGAAGTCGAAAGGTGAGAAACCCCAAG TTTCCTGTGCTCACAGAAGTCGAACGGTGAGAAACCCCAAG < 41bp 0.839827780519763 0.483236596758131 0.3091503 0.21058488 prediction 0.679655561039525 Functional Loss - AGK ENSG00000006530 CDS Human protein_coding chr7:141351329 chr7:141351333 nonsynonymous SNV 0.863 2 25 hm5C_associated_SNPs_50511 0 0 1 1 1 AGK chr7:141351325 3'AG 141351325 Downstream 9bp
chr20 36936018 36936018 1 + G T UCEC 36936015 + 36935995 36936035 41 CAGAAGGAGCTGAAGAGGATCAAGATTCCTGACTACTCAGA CAGAAGGAGCTGAAGAGGATCAATATTCCTGACTACTCAGA < 41bp 0.839782304617079 0.487828178925067 0.66456074 0.18490675 prediction 0.679564609234158 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36936015 chr20:36936018 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_50515 0 0 0 0 2 BPI chr20:36935969 3'AG 36935969 Downstream 50bp
chr20 36936018 36936018 1 + G T UCEC 36936015 + 36935995 36936035 41 CAGAAGGAGCTGAAGAGGATCAAGATTCCTGACTACTCAGA CAGAAGGAGCTGAAGAGGATCAATATTCCTGACTACTCAGA < 41bp 0.839782304617079 0.487828178925067 0.66456074 0.18490675 prediction 0.679564609234158 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36936015 chr20:36936018 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_50515 0 0 0 0 2 BPI chr20:36936083 5'GT 36936083 Upstream 66bp
chr4 5754572 5754572 1 + G T ESCA 5754569 + 5754549 5754589 41 GTTTCTTTTTGCAGGACGCCCTGGAGAGGACGATGGGGCGG GTTTCTTTTTGCAGGACGCCCTGTAGAGGACGATGGGGCGG < 41bp 0.839753182520925 0.49375409374747 0.3753842 0.23541147 prediction 0.67950636504185 Functional Loss - EVC ENSG00000072840 CDS Human protein_coding chr4:5754569 chr4:5754572 stopgain 0.951 0 24 hm5C_associated_SNPs_50517 0 0 0 0 1 EVC chr4:5754563 3'AG 5754563 Downstream 10bp
chr13 21751095 21751095 1 + G T BLCA 21751092 + 21751072 21751112 41 TCCTCTGGCGCGGCCGCATTCCCGGCCGTCAGTGGATCGGG TCCTCTGGCGCGGCCGCATTCCCTGCCGTCAGTGGATCGGG < 41bp 0.847113753326285 0.507370277982197 0.6532745 0.29389298 prediction 0.679486950688177 Functional Loss - MRPL57 ENSG00000173141 CDS Human protein_coding chr13:21751092 chr13:21751095 nonsynonymous SNV 0.005 4 24 hm5C_associated_SNPs_50519 0 0 1 0 1 MRPL57 chr13:21751051 3'AG 21751051 Downstream 45bp
chr1 15541888 15541888 1 + A C KIRP 15541884 + 15541864 15541904 41 GCGAGGACCTGGCCCATGTCCAGCACCCGACAGGCGCTGGG GCGAGGACCTGGCCCATGTCCAGCCCCCGACAGGCGCTGGG < 41bp 0.839692353616745 0.460152698116762 0.27686697 0.3924815 prediction 0.67938470723349 Functional Loss - TMEM51 ENSG00000171729 CDS Human protein_coding chr1:15541884 chr1:15541888 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_50521 0 0 0 0 1 TMEM51 chr1:15541927 5'GT 15541927 Upstream 40bp
chr17 27065227 27065227 1 + G T BRCA 27065224 + 27065204 27065244 41 AGTCGGGTGTGACCATCAAGCACGTGGCCTGTGGGGACTTC AGTCGGGTGTGACCATCAAGCACTTGGCCTGTGGGGACTTC < 41bp 0.839659354546216 0.483802813155563 0.40241912 0.13209435 prediction 0.679318709092432 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27065224 chr17:27065227 nonsynonymous SNV 0.944 3 24 hm5C_associated_SNPs_50524 0 0 1 0 1 NEK8 chr17:27065263 5'GT 27065263 Upstream 37bp
chr22 36124908 36124908 1 + G T UCEC 36124905 + 36124885 36124925 41 GCCAGCCCCACCAGCACCAGCAAGAAAGGGGAGACAGGCCC GCCAGCCCCACCAGCACCAGCAATAAAGGGGAGACAGGCCC < 41bp 0.842667753312889 0.503070170598842 0.6553804 0.39034933 prediction 0.679195165428094 Functional Loss - APOL5 ENSG00000128313 CDS Human protein_coding chr22:36124905 chr22:36124908 nonsynonymous SNV 0.791 1 24 hm5C_associated_SNPs_50527 0 0 0 0 1 APOL5 chr22:36124951 5'GT 36124951 Upstream 44bp
chr2 27728635 27728635 1 + G T UCEC 27728632 + 27728612 27728652 41 ATGAAAGGTGGAAGTGCCACCAAGATTCTGCTGGAAACCCT ATGAAAGGTGGAAGTGCCACCAATATTCTGCTGGAAACCCT < 41bp 0.846526884358062 0.506959672488494 0.5001024 0.14732176 prediction 0.679134423739137 Functional Loss - GCKR ENSG00000084734 CDS Human protein_coding chr2:27728632 chr2:27728635 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_50528 0 0 0 0 2 GCKR chr2:27728585 3'AG 27728585 Downstream 51bp
chr2 27728635 27728635 1 + G T UCEC 27728632 + 27728612 27728652 41 ATGAAAGGTGGAAGTGCCACCAAGATTCTGCTGGAAACCCT ATGAAAGGTGGAAGTGCCACCAATATTCTGCTGGAAACCCT < 41bp 0.846526884358062 0.506959672488494 0.5001024 0.14732176 prediction 0.679134423739137 Functional Loss - GCKR ENSG00000084734 CDS Human protein_coding chr2:27728632 chr2:27728635 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_50528 0 0 0 0 2 GCKR chr2:27728703 5'GT 27728703 Upstream 69bp
chr2 119752052 119752052 1 + G T LUSC 119752049 + 119752029 119752069 41 CCAAGAATAGCTGGGGCCATCATGACTGCAGCCACGAGGAG CCAAGAATAGCTGGGGCCATCATTACTGCAGCCACGAGGAG < 41bp 0.83955891724343 0.490886935463902 0.50705636 0.26352203 prediction 0.67911783448686 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119752049 chr2:119752052 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_50529 0 0 0 0 1 MARCO chr2:119751963 3'AG 119751963 Downstream 90bp
chr3 11059603 11059603 1 + G T LUAD 11059600 + 11059580 11059620 41 TCTTCCTGCTGGAGTGCTCCCTGGGCCAGTACACCTCCATC TCTTCCTGCTGGAGTGCTCCCTGTGCCAGTACACCTCCATC < 41bp 0.860770341745608 0.521213273368227 0.8350851 0.29895818 prediction 0.679114136754761 Functional Loss - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11059600 chr3:11059603 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_50530 0 0 0 0 1 SLC6A1 chr3:11059529 3'AG 11059529 Downstream 75bp
chr16 31422671 31422671 1 + G T LUAD 31422668 + 31422648 31422688 41 ACGCTGTTCTCCGTGGTGAGCAGGGCCACCCCTGGGGCCGC ACGCTGTTCTCCGTGGTGAGCAGTGCCACCCCTGGGGCCGC < 41bp 0.877426600997575 0.53787088318787 0.9124919 0.2884436 prediction 0.679111435619411 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422668 chr16:31422671 nonsynonymous SNV 0.973 3 24 hm5C_associated_SNPs_50531 0 0 0 0 2 ITGAD chr16:31422626 3'AG 31422626 Downstream 46bp
chr16 31422671 31422671 1 + G T LUAD 31422668 + 31422648 31422688 41 ACGCTGTTCTCCGTGGTGAGCAGGGCCACCCCTGGGGCCGC ACGCTGTTCTCCGTGGTGAGCAGTGCCACCCCTGGGGCCGC < 41bp 0.877426600997575 0.53787088318787 0.9124919 0.2884436 prediction 0.679111435619411 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422668 chr16:31422671 nonsynonymous SNV 0.973 3 24 hm5C_associated_SNPs_50531 0 0 0 0 2 ITGAD chr16:31422629 3'AG 31422629 Downstream 43bp
chr4 53731539 53731539 1 + A C COAD 53731535 + 53731515 53731555 41 GCCTGAGCTGCAGTGAACAGCTGAATAGGTGCATTCGCTGG GCCTGAGCTGCAGTGAACAGCTGACTAGGTGCATTCGCTGG < 41bp 0.839541207561732 0.48968801192128 0.17126995 0.18237668 prediction 0.679082415123465 Functional Loss - RASL11B ENSG00000128045 CDS Human protein_coding chr4:53731535 chr4:53731539 nonsynonymous SNV 0.655 1 25 hm5C_associated_SNPs_50533 0 0 0 0 1 RASL11B chr4:53731502 3'AG 53731502 Downstream 38bp
chr19 39936605 39936605 1 + G T UCEC 39936602 + 39936582 39936622 41 AGCAGTGACGGCGAGGAGGCCGAGGTCTGTGGCTGGGGCGC AGCAGTGACGGCGAGGAGGCCGATGTCTGTGGCTGGGGCGC < 41bp 0.846123874101662 0.50666546905977 0.88650286 0.57087296 prediction 0.678916810083785 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39936602 chr19:39936605 nonsynonymous SNV 0.980 2 24 hm5C_associated_SNPs_50536 0 0 1 0 3 SUPT5H chr19:39936519 3'AG 39936519 Downstream 87bp
chr19 39936605 39936605 1 + G T UCEC 39936602 + 39936582 39936622 41 AGCAGTGACGGCGAGGAGGCCGAGGTCTGTGGCTGGGGCGC AGCAGTGACGGCGAGGAGGCCGATGTCTGTGGCTGGGGCGC < 41bp 0.846123874101662 0.50666546905977 0.88650286 0.57087296 prediction 0.678916810083785 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39936602 chr19:39936605 nonsynonymous SNV 0.980 2 24 hm5C_associated_SNPs_50536 0 0 1 0 3 SUPT5H chr19:39936522 3'AG 39936522 Downstream 84bp
chr19 39936605 39936605 1 + G T UCEC 39936602 + 39936582 39936622 41 AGCAGTGACGGCGAGGAGGCCGAGGTCTGTGGCTGGGGCGC AGCAGTGACGGCGAGGAGGCCGATGTCTGTGGCTGGGGCGC < 41bp 0.846123874101662 0.50666546905977 0.88650286 0.57087296 prediction 0.678916810083785 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39936602 chr19:39936605 nonsynonymous SNV 0.980 2 24 hm5C_associated_SNPs_50536 0 0 1 0 3 SUPT5H chr19:39936605 5'GT 39936605 Upstream 1bp
chr17 7323773 7323773 1 + G T CESC 7323770 + 7323750 7323790 41 ACTGCAACAGCAACAGCTGCCAGGACCTGGGCAACTCTGTC ACTGCAACAGCAACAGCTGCCAGTACCTGGGCAACTCTGTC < 41bp 0.843510083873628 0.504150406312492 0.59213996 0.112317085 prediction 0.678719355122272 Functional Loss - SPEM1 ENSG00000181323 CDS Human protein_coding chr17:7323770 chr17:7323773 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_50539 0 0 0 0 1 SPEM1 chr17:7323847 5'GT 7323847 Upstream 75bp
chr10 103919723 103919723 1 + G T UCEC 103919720 + 103919700 103919740 41 TCTCTGGGAACCCAGCCTCCCAAGAAGGCTGTGGAGAAGCA TCTCTGGGAACCCAGCCTCCCAATAAGGCTGTGGAGAAGCA < 41bp 0.839346134339005 0.489211049504718 0.24040458 0.13853616 prediction 0.67869226867801 Functional Loss - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919720 chr10:103919723 nonsynonymous SNV 0.279 4 24 hm5C_associated_SNPs_50541 0 0 1 0 2 NOLC1 chr10:103919653 3'AG 103919653 Downstream 71bp
chr10 103919723 103919723 1 + G T UCEC 103919720 + 103919700 103919740 41 TCTCTGGGAACCCAGCCTCCCAAGAAGGCTGTGGAGAAGCA TCTCTGGGAACCCAGCCTCCCAATAAGGCTGTGGAGAAGCA < 41bp 0.839346134339005 0.489211049504718 0.24040458 0.13853616 prediction 0.67869226867801 Functional Loss - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919720 chr10:103919723 nonsynonymous SNV 0.279 4 24 hm5C_associated_SNPs_50541 0 0 1 0 2 NOLC1 chr10:103919781 5'GT 103919781 Upstream 59bp
chr17 7948663 7948663 1 + G T SARC 7948660 + 7948640 7948680 41 GCCCCAATGACCCTGCTATACCAGAGCCCAGGCTGCGGGCC GCCCCAATGACCCTGCTATACCATAGCCCAGGCTGCGGGCC < 41bp 0.839295216015744 0.474591279655596 0.74473965 0.23395237 prediction 0.678590432031489 Functional Loss - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7948660 chr17:7948663 nonsynonymous SNV 0.014 2 24 hm5C_associated_SNPs_50544 0 0 0 0 1 ALOX15B chr17:7948702 5'GT 7948702 Upstream 40bp
chr19 1219381 1219381 1 + G T LUSC 1219378 + 1219358 1219398 41 AGGAAATGCTGGACAGCGTGCCGGAGAAGCGTTTCCCAGTG AGGAAATGCTGGACAGCGTGCCGTAGAAGCGTTTCCCAGTG < 41bp 0.839293831011722 0.493420144282957 0.8309299 0.51470864 prediction 0.678587662023444 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1219378 chr19:1219381 stopgain 0.914 1 24 hm5C_associated_SNPs_50545 0 0 1 0 1 STK11 chr19:1219412 5'GT 1219412 Upstream 32bp
chr9 140110248 140110248 1 + G T UCEC 140110245 + 140110225 140110265 41 CCATCCAGGAGCGTGTGGCCCAGGGCCAGACTGGTGAGCAC CCATCCAGGAGCGTGTGGCCCAGTGCCAGACTGGTGAGCAC < 41bp 0.855055243207559 0.515764875751463 0.8743175 0.5938278 prediction 0.678580734912191 Functional Loss - NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110245 chr9:140110248 nonsynonymous SNV 0.141 4 24 hm5C_associated_SNPs_50547 0 0 1 0 1 NDOR1 chr9:140110257 5'GT 140110257 Upstream 10bp
chr3 129817127 129817127 1 + A C HNSC 129817123 + 129817103 129817143 41 GAAGGCAAGCTAAACCAGTTCCGGAAGAACCTGCGGGAGTC GAAGGCAAGCTAAACCAGTTCCGGCAGAACCTGCGGGAGTC < 41bp 0.839258310709816 0.487848537626616 0.81203836 0.47768646 prediction 0.678516621419631 Functional Loss - FAM86HP ENSG00000251287 ncRNA_exonic Human protein_coding chr3:129817123 chr3:129817127 . . 0 25 hm5C_associated_SNPs_50550 0 0 0 0 1 ALG1L2 chr3:129817066 3'AG 129817066 Downstream 62bp
chr6 134212874 134212874 1 + G T CESC 134212871 + 134212851 134212891 41 ACGTGGCCCTTTATGGTGGCCGGGAAACCCGAGAGTGACCT ACGTGGCCCTTTATGGTGGCCGGTAAACCCGAGAGTGACCT < 41bp 0.8468200422581 0.507595140863219 0.87249947 0.53807044 prediction 0.678449802789761 Functional Loss - TCF21 ENSG00000118526 CDS Human protein_coding chr6:134212871 chr6:134212874 synonymous SNV . 0 24 hm5C_associated_SNPs_50552 0 0 0 0 2 TCF21 chr6:134212851 3'AG 134212851 Downstream 24bp
chr6 134212874 134212874 1 + G T CESC 134212871 + 134212851 134212891 41 ACGTGGCCCTTTATGGTGGCCGGGAAACCCGAGAGTGACCT ACGTGGCCCTTTATGGTGGCCGGTAAACCCGAGAGTGACCT < 41bp 0.8468200422581 0.507595140863219 0.87249947 0.53807044 prediction 0.678449802789761 Functional Loss - TCF21 ENSG00000118526 CDS Human antisense chr6:134212871 chr6:134212874 synonymous SNV . 0 24 hm5C_associated_SNPs_50552 0 0 0 0 2 TCF21 chr6:134212948 5'GT 134212948 Upstream 75bp
chr17 45299793 45299793 1 + G T UCEC 45299790 + 45299770 45299810 41 TGGAGCAGCTGTTAGCTGGGCAAGAGGATGCCAATGGCTGC TGGAGCAGCTGTTAGCTGGGCAATAGGATGCCAATGGCTGC < 41bp 0.83920479836692 0.489095378169456 0.8452188 0.6517781 prediction 0.67840959673384 Functional Loss - MYL4 ENSG00000198336 CDS Human protein_coding chr17:45299790 chr17:45299793 stopgain 0.985 1 24 hm5C_associated_SNPs_50553 0 0 1 0 2 MYL4 chr17:45299746 3'AG 45299746 Downstream 48bp
chr17 45299793 45299793 1 + G T UCEC 45299790 + 45299770 45299810 41 TGGAGCAGCTGTTAGCTGGGCAAGAGGATGCCAATGGCTGC TGGAGCAGCTGTTAGCTGGGCAATAGGATGCCAATGGCTGC < 41bp 0.83920479836692 0.489095378169456 0.8452188 0.6517781 prediction 0.67840959673384 Functional Loss - MYL4 ENSG00000198336 CDS Human protein_coding chr17:45299790 chr17:45299793 stopgain 0.985 1 24 hm5C_associated_SNPs_50553 0 0 1 0 2 MYL4 chr17:45299823 5'GT 45299823 Upstream 31bp
chr1 156702150 156702150 1 + G T SARC 156702147 + 156702127 156702167 41 CCTGGCCTTTACCCGGATGCCTGGCTTTCAGACCCCCTCAG CCTGGCCTTTACCCGGATGCCTGTCTTTCAGACCCCCTCAG < 41bp 0.860140327811631 0.52097645631685 0.09925315 0.057150066 prediction 0.678327742989564 Functional Loss - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156702147 chr1:156702150 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_50554 0 0 1 0 1 RRNAD1 chr1:156702073 3'AG 156702073 Downstream 78bp
chr1 206653222 206653222 1 + A C UCEC 206653218 + 206653198 206653238 41 GGTCTTTGTCTGCAGCTGCTCTGGACGTCCCCAAGTTCGTC GGTCTTTGTCTGCAGCTGCTCTGGCCGTCCCCAAGTTCGTC < 41bp 0.839137965868785 0.464335240092122 0.09717879 0.1902085 prediction 0.678275931737571 Functional Loss - IKBKE ENSG00000143466 CDS Human other chr1:206653218 chr1:206653222 nonsynonymous SNV 0.828 2 25 hm5C_associated_SNPs_50555 0 0 0 0 2 IKBKE chr1:206653213 3'AG 206653213 Downstream 10bp
chr1 206653222 206653222 1 + A C UCEC 206653218 + 206653198 206653238 41 GGTCTTTGTCTGCAGCTGCTCTGGACGTCCCCAAGTTCGTC GGTCTTTGTCTGCAGCTGCTCTGGCCGTCCCCAAGTTCGTC < 41bp 0.839137965868785 0.464335240092122 0.09717879 0.1902085 prediction 0.678275931737571 Functional Loss - IKBKE ENSG00000143466 CDS Human other chr1:206653218 chr1:206653222 nonsynonymous SNV 0.828 2 25 hm5C_associated_SNPs_50555 0 0 0 0 2 IKBKE chr1:206653277 5'GT 206653277 Upstream 56bp
chr2 113763575 113763575 1 + A C rs895497 113763571 + 113763551 113763591 41 CATTGAAAATTGACACACCTCAGCAGGGGAGCATTCAGGAT CATTGAAAATTGACACACCTCAGCCGGGGAGCATTCAGGAT < 41bp 0.865607031158191 0.526486488506933 0.035678685 0.034057707 prediction 0.678241085302514 Functional Loss - IL36A ENSG00000136694 CDS Human protein_coding chr2:113763571 chr2:113763575 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_50556 0 0 0 0 2 IL36A chr2:113763551 3'AG 113763551 Downstream 25bp
chr2 113763575 113763575 1 + A C rs895497 113763571 + 113763551 113763591 41 CATTGAAAATTGACACACCTCAGCAGGGGAGCATTCAGGAT CATTGAAAATTGACACACCTCAGCCGGGGAGCATTCAGGAT < 41bp 0.865607031158191 0.526486488506933 0.035678685 0.034057707 prediction 0.678241085302514 Functional Loss - IL36A ENSG00000136694 CDS Human protein_coding chr2:113763571 chr2:113763575 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_50556 0 0 0 0 2 IL36A chr2:113763664 5'GT 113763664 Upstream 90bp
chr16 69184518 69184518 1 + A C ESCA 69184514 + 69184494 69184534 41 CTGGTCCCTGTGACATCTAACAGCAGTGAGAAGCAGTGGGT CTGGTCCCTGTGACATCTAACAGCCGTGAGAAGCAGTGGGT < 41bp 0.839101762692873 0.46409685459319 0.85414207 0.78644794 prediction 0.678203525385746 Functional Loss - UTP4 ENSG00000141076 CDS Human protein_coding chr16:69184514 chr16:69184518 nonsynonymous SNV 0.879 0 25 hm5C_associated_SNPs_50557 0 0 1 0 2 UTP4 chr16:69184440 3'AG 69184440 Downstream 79bp
chr16 69184518 69184518 1 + A C ESCA 69184514 + 69184494 69184534 41 CTGGTCCCTGTGACATCTAACAGCAGTGAGAAGCAGTGGGT CTGGTCCCTGTGACATCTAACAGCCGTGAGAAGCAGTGGGT < 41bp 0.839101762692873 0.46409685459319 0.85414207 0.78644794 prediction 0.678203525385746 Functional Loss - UTP4 ENSG00000141076 CDS Human protein_coding chr16:69184514 chr16:69184518 nonsynonymous SNV 0.879 0 25 hm5C_associated_SNPs_50557 0 0 1 0 2 UTP4 chr16:69184611 5'GT 69184611 Upstream 94bp
chr2 219483388 219483388 1 + G T LUAD 219483385 + 219483365 219483405 41 CAGAGGAGCTCCCCCTGGAGCAGGGCTTCACCATTGTCTTC CAGAGGAGCTCCCCCTGGAGCAGTGCTTCACCATTGTCTTC < 41bp 0.868354743060661 0.529309270986939 0.92469746 0.08825582 prediction 0.678090944147444 Functional Loss - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219483385 chr2:219483388 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_50559 0 0 0 0 1 PLCD4 chr2:219483302 3'AG 219483302 Downstream 87bp
chr1 110169497 110169497 1 + G T UCEC 110169494 + 110169474 110169514 41 GCTGAAAAGCCTCTGGAGACCCGGACCTATGAACAGGGCCC GCTGAAAAGCCTCTGGAGACCCGTACCTATGAACAGGGCCC < 41bp 0.843768556906992 0.504733138481509 0.5619595 0.19347787 prediction 0.678070836850967 Functional Loss - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110169494 chr1:110169497 synonymous SNV . 0 24 hm5C_associated_SNPs_50560 0 0 1 0 1 AMPD2 chr1:110169534 5'GT 110169534 Upstream 38bp
chr12 57892220 57892220 1 + A C BLCA 57892216 + 57892196 57892236 41 CTTGCAGGTACTCTCGCCTCCGCCAGTGGAACACCCTCTAT CTTGCAGGTACTCTCGCCTCCGCCCGTGGAACACCCTCTAT < 41bp 0.838986616062516 0.459670949167757 0.3383064 0.17082971 prediction 0.677973232125033 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57892216 chr12:57892220 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_50565 0 0 1 0 1 MARS chr12:57892203 3'AG 57892203 Downstream 18bp
chr9 4583137 4583137 1 + G T UCEC 4583134 + 4583114 4583154 41 AGTGCCGTGGGCCTGCCCGCCGAGGATGTCACCCTGATCAT AGTGCCGTGGGCCTGCCCGCCGATGATGTCACCCTGATCAT < 41bp 0.838892144016028 0.482392836349091 0.8984433 0.112443715 prediction 0.677784288032056 Functional Loss - SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4583134 chr9:4583137 nonsynonymous SNV 0.944 0 24 hm5C_associated_SNPs_50567 0 0 0 0 2 SLC1A1 chr9:4583038 3'AG 4583038 Downstream 100bp
chr9 4583137 4583137 1 + G T UCEC 4583134 + 4583114 4583154 41 AGTGCCGTGGGCCTGCCCGCCGAGGATGTCACCCTGATCAT AGTGCCGTGGGCCTGCCCGCCGATGATGTCACCCTGATCAT < 41bp 0.838892144016028 0.482392836349091 0.8984433 0.112443715 prediction 0.677784288032056 Functional Loss - SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4583134 chr9:4583137 nonsynonymous SNV 0.944 0 24 hm5C_associated_SNPs_50567 0 0 0 0 2 SLC1A1 chr9:4583172 5'GT 4583172 Upstream 36bp
chr12 113534574 113534574 1 + A C SKCM 113534570 + 113534550 113534590 41 AGAAGACTCATCTTCACTATCGGCACGTCCAACACCACGGG AGAAGACTCATCTTCACTATCGGCCCGTCCAACACCACGGG < 41bp 0.838887299264081 0.47267948747206 0.84739506 0.83667076 prediction 0.677774598528162 Functional Loss - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113534570 chr12:113534574 nonsynonymous SNV 0.389 2 25 hm5C_associated_SNPs_50570 0 0 0 0 1 DTX1 chr12:113534520 3'AG 113534520 Downstream 55bp
chr6 35434060 35434060 1 + G T UCEC 35434057 + 35434037 35434077 41 GGCTGGGCCTGGCTATGGCCCTAGAACCTAACACCACCTTC GGCTGGGCCTGGCTATGGCCCTATAACCTAACACCACCTTC < 41bp 0.838875546133906 0.496979715831733 0.15651101 0.2752192 prediction 0.677751092267811 Functional Loss - FANCE ENSG00000112039 CDS Human protein_coding chr6:35434057 chr6:35434060 stopgain 0.985 0 24 hm5C_associated_SNPs_50571 0 0 1 0 1 FANCE chr6:35434021 3'AG 35434021 Downstream 40bp
chr17 40717938 40717938 1 + G T UCEC 40717935 + 40717915 40717955 41 TGTCTGAAGGTGGAGAAAGCCTGGGCCCTCTTGCAGAAGCG TGTCTGAAGGTGGAGAAAGCCTGTGCCCTCTTGCAGAAGCG < 41bp 0.838813101139153 0.484480454470631 0.3882305 0.07281041 prediction 0.677626202278306 Functional Loss - COASY ENSG00000068120 CDS Human protein_coding chr17:40717935 chr17:40717938 nonsynonymous SNV 0.960 4 24 hm5C_associated_SNPs_50573 0 0 1 0 1 COASY chr17:40717924 3'AG 40717924 Downstream 15bp
chr15 38591692 38591692 1 + G T LUSC 38591689 + 38591669 38591709 41 CTGTCTTCAAAGTCCCTCATCAGGAAGAGAATGGCTGTGCT CTGTCTTCAAAGTCCCTCATCAGTAAGAGAATGGCTGTGCT < 41bp 0.838790187236932 0.499600051402571 0.68880737 0.20054904 prediction 0.677580374473863 Functional Loss - SPRED1 ENSG00000166068 CDS Human protein_coding chr15:38591689 chr15:38591692 stopgain 1.000 1 24 hm5C_associated_SNPs_50575 0 0 1 0 1 SPRED1 chr15:38591748 5'GT 38591748 Upstream 57bp
chr12 52376575 52376575 1 + G T CESC 52376572 + 52376552 52376592 41 CAAGGGAGGAAGGGGAAGAGCAAGATTTTTATTCCCACTGA CAAGGGAGGAAGGGGAAGAGCAATATTTTTATTCCCACTGA < 41bp 0.849891804587365 0.511113746663176 0.8129991 0.60231113 prediction 0.677556115848379 Functional Loss - ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52376572 chr12:52376575 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_50577 0 0 0 0 1 ACVR1B chr12:52376592 5'GT 52376592 Upstream 18bp
chr17 79769814 79769814 1 + G T UCEC 79769811 + 79769791 79769831 41 GCAGTGGTCAAGTGTCTGTTCGAGAACGTCCAGTGAGTATG GCAGTGGTCAAGTGTCTGTTCGATAACGTCCAGTGAGTATG < 41bp 0.857754239879889 0.519006514809042 0.24843016 0.11211282 prediction 0.677495450141695 Functional Loss - GCGR ENSG00000215644 CDS Human protein_coding chr17:79769811 chr17:79769814 nonsynonymous SNV 0.706 3 24 hm5C_associated_SNPs_50579 0 0 0 0 2 GCGR chr17:79769762 3'AG 79769762 Downstream 53bp
chr17 79769814 79769814 1 + G T UCEC 79769811 + 79769791 79769831 41 GCAGTGGTCAAGTGTCTGTTCGAGAACGTCCAGTGAGTATG GCAGTGGTCAAGTGTCTGTTCGATAACGTCCAGTGAGTATG < 41bp 0.857754239879889 0.519006514809042 0.24843016 0.11211282 prediction 0.677495450141695 Functional Loss - GCGR ENSG00000215644 CDS Human protein_coding chr17:79769811 chr17:79769814 nonsynonymous SNV 0.706 3 24 hm5C_associated_SNPs_50579 0 0 0 0 2 GCGR chr17:79769822 5'GT 79769822 Upstream 9bp
chr16 56906698 56906698 1 + G T PAAD 56906695 + 56906675 56906715 41 GCCAACATATCTGGTGACCTCAAGGTGAGCAGAATACTTGC GCCAACATATCTGGTGACCTCAATGTGAGCAGAATACTTGC < 41bp 0.838729196897945 0.484760802077967 0.8622968 0.32687628 prediction 0.67745839379589 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56906695 chr16:56906698 nonsynonymous SNV 0.985 3 24 hm5C_associated_SNPs_50580 0 0 0 0 1 SLC12A3 chr16:56906698 5'GT 56906698 Upstream 1bp
chr4 75937717 75937717 1 + G T BLCA 75937714 + 75937694 75937734 41 ATTGTACCACCGACCACCATCTGGACTAGCTCTCCACAAAA ATTGTACCACCGACCACCATCTGTACTAGCTCTCCACAAAA < 41bp 0.849854294644907 0.511180891963717 0.80989707 0.34079206 prediction 0.677346805362381 Functional Loss - PARM1 ENSG00000169116 CDS Human protein_coding chr4:75937714 chr4:75937717 nonsynonymous SNV 0.109 4 24 hm5C_associated_SNPs_50584 0 0 0 0 1 PARM1 chr4:75937635 3'AG 75937635 Downstream 83bp
chr3 10885953 10885953 1 + G T LUAD 10885950 + 10885930 10885970 41 GAGCACATCGGGAACCTTCGCTGGGAGCTGGCCTTGTGTCT GAGCACATCGGGAACCTTCGCTGTGAGCTGGCCTTGTGTCT < 41bp 0.838655471887743 0.490654871587356 0.66268104 0.10963541 prediction 0.677310943775487 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10885950 chr3:10885953 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50585 0 0 1 0 2 SLC6A11 chr3:10885899 3'AG 10885899 Downstream 55bp
chr3 10885953 10885953 1 + G T LUAD 10885950 + 10885930 10885970 41 GAGCACATCGGGAACCTTCGCTGGGAGCTGGCCTTGTGTCT GAGCACATCGGGAACCTTCGCTGTGAGCTGGCCTTGTGTCT < 41bp 0.838655471887743 0.490654871587356 0.66268104 0.10963541 prediction 0.677310943775487 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10885950 chr3:10885953 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50585 0 0 1 0 2 SLC6A11 chr3:10886031 5'GT 10886031 Upstream 79bp
chr17 79941544 79941544 1 + G T rs147861765 79941541 + 79941521 79941561 41 AGCCGTGAGGGGCCTGAGAACATGGTGGGTCGTGCTCTGGG AGCCGTGAGGGGCCTGAGAACATTGTGGGTCGTGCTCTGGG < 41bp 0.838643894706766 0.483764353051407 0.8634184 0.43227127 prediction 0.677287789413532 Functional Loss - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79941541 chr17:79941544 nonsynonymous SNV 0.684 0 24 hm5C_associated_SNPs_50586 0 0 1 0 1 ASPSCR1 chr17:79941544 5'GT 79941544 Upstream 1bp
chr19 34887294 34887294 1 + G T STAD 34887291 + 34887271 34887311 41 CCCCATTGTGTGGGGGGAGCCAGGGACCAATGGCCAGCATG CCCCATTGTGTGGGGGGAGCCAGTGACCAATGGCCAGCATG < 41bp 0.862677685696555 0.524113108401064 0.91528964 0.15684831 prediction 0.677129154590983 Functional Loss - GPI ENSG00000105220;ENSG00000266953 CDS Human protein_coding chr19:34887291 chr19:34887294 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_50589 0 0 1 0 2 GPI chr19:34887206 3'AG 34887206 Downstream 89bp
chr19 34887294 34887294 1 + G T STAD 34887291 + 34887271 34887311 41 CCCCATTGTGTGGGGGGAGCCAGGGACCAATGGCCAGCATG CCCCATTGTGTGGGGGGAGCCAGTGACCAATGGCCAGCATG < 41bp 0.862677685696555 0.524113108401064 0.91528964 0.15684831 prediction 0.677129154590983 Functional Loss - GPI ENSG00000105220;ENSG00000266953 CDS Human other chr19:34887291 chr19:34887294 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_50589 0 0 1 0 2 GPI chr19:34887335 5'GT 34887335 Upstream 42bp
chr3 184294690 184294690 1 + A C STAD 184294686 + 184294666 184294706 41 TGAATGAAACCTCACTGATCCTCGAGTGGAGTGAGCCCCGG TGAATGAAACCTCACTGATCCTCGCGTGGAGTGAGCCCCGG < 41bp 0.883529406057981 0.545039791007789 0.82952976 0.33670235 prediction 0.676979230100383 Functional Loss - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184294686 chr3:184294690 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_50593 0 0 0 0 1 EPHB3 chr3:184294630 3'AG 184294630 Downstream 61bp
chr17 74077643 74077643 1 + G T STAD 74077640 + 74077620 74077660 41 TTCCAGCTGAGGCTGAAGAACACGGCGCTCAAGTCCATCAT TTCCAGCTGAGGCTGAAGAACACTGCGCTCAAGTCCATCAT < 41bp 0.838484983261073 0.488233248987526 0.38166055 0.11354655 prediction 0.676969966522146 Functional Loss - ZACN ENSG00000186919 CDS Human protein_coding chr17:74077640 chr17:74077643 synonymous SNV . 0 24 hm5C_associated_SNPs_50594 0 0 0 0 1 ZACN chr17:74077626 3'AG 74077626 Downstream 18bp
chr9 131750444 131750444 1 + G T UCEC 131750441 + 131750421 131750461 41 CTTCTAATGTGGTGTCCCCCCTGGAACAGGCTCTCTCACAA CTTCTAATGTGGTGTCCCCCCTGTAACAGGCTCTCTCACAA < 41bp 0.841966610851081 0.503546503421148 0.2665592 0.04722914 prediction 0.676840214859865 Functional Loss - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131750441 chr9:131750444 stopgain 1.000 1 24 hm5C_associated_SNPs_50597 0 0 1 0 1 NUP188 chr9:131750465 5'GT 131750465 Upstream 22bp
chr2 26678082 26678082 1 + A C rs115095929 26678078 + 26678058 26678098 41 ACACAGAGCTGCAGGCGCTACTGCAGCAGTATCTGAACTCC ACACAGAGCTGCAGGCGCTACTGCCGCAGTATCTGAACTCC < 41bp 0.886626495076217 0.548240448041464 0.4564768 0.2703565 prediction 0.676772094069507 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26678078 chr2:26678082 nonsynonymous SNV 0.215 3 25 hm5C_associated_SNPs_50598 1 0 0 0 2 DRC1 chr2:26677999 3'AG 26677999 Downstream 84bp
chr2 26678082 26678082 1 + A C rs115095929 26678078 + 26678058 26678098 41 ACACAGAGCTGCAGGCGCTACTGCAGCAGTATCTGAACTCC ACACAGAGCTGCAGGCGCTACTGCCGCAGTATCTGAACTCC < 41bp 0.886626495076217 0.548240448041464 0.4564768 0.2703565 prediction 0.676772094069507 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26678078 chr2:26678082 nonsynonymous SNV 0.215 3 25 hm5C_associated_SNPs_50598 1 0 0 0 2 DRC1 chr2:26678101 5'GT 26678101 Upstream 20bp
chr11 60070084 60070084 1 + G T LUAD 60070081 + 60070061 60070101 41 CAGCTCTGTACTGGCTGCATCAGGGATCTTAATCAACACAT CAGCTCTGTACTGGCTGCATCAGTGATCTTAATCAACACAT < 41bp 0.838359812583503 0.491053078534263 0.91666615 0.037118435 prediction 0.676719625167005 Functional Loss - MS4A4A ENSG00000110079 CDS Human protein_coding chr11:60070081 chr11:60070084 nonsynonymous SNV 0.007 3 24 hm5C_associated_SNPs_50599 0 0 0 0 1 MS4A4A chr11:60070032 3'AG 60070032 Downstream 53bp
chr1 12819346 12819346 1 + G T LUAD 12819343 + 12819323 12819363 41 CAACCGGCATGGTTACAACCCGGGGCTGCCTCCACTCCGCA CAACCGGCATGGTTACAACCCGGTGCTGCCTCCACTCCGCA < 41bp 0.870719630168412 0.532397375991671 0.9409662 0.86679184 prediction 0.67664450835348 Functional Loss - C1orf158 ENSG00000157330 CDS Human protein_coding chr1:12819343 chr1:12819346 nonsynonymous SNV 0.031 0 24 hm5C_associated_SNPs_50601 0 0 0 0 1 C1orf158 chr1:12819420 5'GT 12819420 Upstream 75bp
chr1 45243363 45243363 1 + G T UCEC 45243360 + 45243340 45243380 41 AGCTGGTTCGTACCAAGACCCTGGTGAAGAATTGCATCGTG AGCTGGTTCGTACCAAGACCCTGTTGAAGAATTGCATCGTG < 41bp 0.838291553675017 0.491230626313663 0.055200428 0.01417771 prediction 0.676583107350034 Functional Loss - RPS8 ENSG00000142937 CDS Human protein_coding chr1:45243360 chr1:45243363 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_50603 0 0 1 0 2 RPS8 chr1:45243286 3'AG 45243286 Downstream 78bp
chr1 45243363 45243363 1 + G T UCEC 45243360 + 45243340 45243380 41 AGCTGGTTCGTACCAAGACCCTGGTGAAGAATTGCATCGTG AGCTGGTTCGTACCAAGACCCTGTTGAAGAATTGCATCGTG < 41bp 0.838291553675017 0.491230626313663 0.055200428 0.01417771 prediction 0.676583107350034 Functional Loss - RPS8 ENSG00000142937 CDS Human protein_coding chr1:45243360 chr1:45243363 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_50603 0 0 1 0 2 RPS8 chr1:45243461 5'GT 45243461 Upstream 99bp
chr1 162336912 162336912 1 + G T KIRC 162336909 + 162336889 162336929 41 CTGCCCGTGCTCTGTGACCCCACGACCCCTAAGCCAGAGGA CTGCCCGTGCTCTGTGACCCCACTACCCCTAAGCCAGAGGA < 41bp 0.838273879225577 0.49769267779846 0.89647794 0.4658675 prediction 0.676547758451153 Functional Loss - NOS1AP ENSG00000198929;ENSG00000254706 CDS Human other chr1:162336909 chr1:162336912 synonymous SNV . 0 24 hm5C_associated_SNPs_50604 0 0 0 0 1 NOS1AP chr1:162336842 3'AG 162336842 Downstream 71bp
chr20 31601730 31601730 1 + G T LUAD 31601727 + 31601707 31601747 41 ATCTCTGCCTGCTCTTTATTCTCGGGCCACGCCAACGAGTT ATCTCTGCCTGCTCTTTATTCTCTGGCCACGCCAACGAGTT < 41bp 0.838221232277281 0.476316322741337 0.34082007 0.20201957 prediction 0.676442464554563 Functional Loss - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31601727 chr20:31601730 synonymous SNV . 0 24 hm5C_associated_SNPs_50607 0 0 0 0 1 BPIFB2 chr20:31601762 5'GT 31601762 Upstream 33bp
chr11 45949746 45949746 1 + A C rs11038714 45949742 + 45949722 45949762 41 GCACAGGTACCACGAGTGGCCCCGAGGCCACGCACCCACAG GCACAGGTACCACGAGTGGCCCCGCGGCCACGCACCCACAG < 41bp 0.85427157181369 0.516112469245362 0.088805765 0.13803336 prediction 0.676318205136657 Functional Loss - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45949742 chr11:45949746 synonymous SNV . 0 25 hm5C_associated_SNPs_50608 0 0 1 0 1 LARGE2 chr11:45949728 3'AG 45949728 Downstream 19bp
chr19 10572341 10572341 1 + G T UCEC 10572338 + 10572318 10572358 41 CGCCAGCGGCAGAGCCTACGCAAGATGGTCATCGACATGGT CGCCAGCGGCAGAGCCTACGCAATATGGTCATCGACATGGT < 41bp 0.838113210940378 0.479615959722914 0.28113675 0.072452456 prediction 0.676226421880756 Functional Loss - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10572338 chr19:10572341 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50609 0 0 0 0 1 PDE4A chr19:10572356 5'GT 10572356 Upstream 16bp
chr15 41767772 41767772 1 + G T GBM 41767769 + 41767749 41767789 41 GTTTAGAGTTTGTCTCAAACCAAGAATTCACCGAAAGTGAG GTTTAGAGTTTGTCTCAAACCAATAATTCACCGAAAGTGAG < 41bp 0.840446678090504 0.502360946522507 0.14768961 0.11476654 prediction 0.676171463135994 Functional Loss - RTF1 ENSG00000137815 CDS Human protein_coding chr15:41767769 chr15:41767772 stopgain 1.000 1 24 hm5C_associated_SNPs_50612 0 0 1 0 2 RTF1 chr15:41767723 3'AG 41767723 Downstream 50bp
chr15 41767772 41767772 1 + G T GBM 41767769 + 41767749 41767789 41 GTTTAGAGTTTGTCTCAAACCAAGAATTCACCGAAAGTGAG GTTTAGAGTTTGTCTCAAACCAATAATTCACCGAAAGTGAG < 41bp 0.840446678090504 0.502360946522507 0.14768961 0.11476654 prediction 0.676171463135994 Functional Loss - RTF1 ENSG00000137815 CDS Human protein_coding chr15:41767769 chr15:41767772 stopgain 1.000 1 24 hm5C_associated_SNPs_50612 0 0 1 0 2 RTF1 chr15:41767810 5'GT 41767810 Upstream 39bp
chr1 1961073 1961073 1 + G T UCEC 1961070 + 1961050 1961090 41 GGGCATCAGCCATCAAGGCACTGGACGTCTACTTCTGGATC GGGCATCAGCCATCAAGGCACTGTACGTCTACTTCTGGATC < 41bp 0.850950791552731 0.512865830105484 0.382397 0.20968854 prediction 0.676169922894492 Functional Loss - GABRD ENSG00000187730 CDS Human protein_coding chr1:1961070 chr1:1961073 nonsynonymous SNV 0.957 5 24 hm5C_associated_SNPs_50613 0 0 0 0 1 GABRD chr1:1960990 3'AG 1960990 Downstream 84bp
chr12 49158699 49158699 1 + G T rs556353603 49158696 + 49158676 49158716 41 ACTTCAGCTTCTGGTGGTCCCATGATCCAGGAGTGCGTCCA ACTTCAGCTTCTGGTGGTCCCATTATCCAGGAGTGCGTCCA < 41bp 0.850409463684791 0.512331947566482 0.08054909 0.024982274 prediction 0.676155032236618 Functional Loss - TEX49 ENSG00000257987 CDS Human protein_coding chr12:49158696 chr12:49158699 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_50614 0 0 0 0 2 TEX49 chr12:49158634 3'AG 49158634 Downstream 66bp
chr12 49158699 49158699 1 + G T rs556353603 49158696 + 49158676 49158716 41 ACTTCAGCTTCTGGTGGTCCCATGATCCAGGAGTGCGTCCA ACTTCAGCTTCTGGTGGTCCCATTATCCAGGAGTGCGTCCA < 41bp 0.850409463684791 0.512331947566482 0.08054909 0.024982274 prediction 0.676155032236618 Functional Loss - TEX49 ENSG00000257987 CDS Human protein_coding chr12:49158696 chr12:49158699 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_50614 0 0 0 0 2 TEX49 chr12:49158778 5'GT 49158778 Upstream 80bp
chr2 143643031 143643031 1 + A C SKCM 143643027 + 143643007 143643047 41 CAACGGATGAGAGGGTGGCTCTCCACCTAGATGAGGAAGAT CAACGGATGAGAGGGTGGCTCTCCCCCTAGATGAGGAAGAT < 41bp 0.838047395544882 0.447080610651735 0.89954984 0.13084579 prediction 0.676094791089763 Functional Loss - KYNU ENSG00000115919 CDS Human protein_coding chr2:143643027 chr2:143643031 nonsynonymous SNV 0.756 0 25 hm5C_associated_SNPs_50616 0 0 1 0 1 KYNU chr2:143643105 5'GT 143643105 Upstream 75bp
chr17 18138814 18138814 1 + G T rs186995213 18138811 + 18138791 18138831 41 CCATCACTGGGGGCCGAAACCTGGCCCAGGAGCCGTCACAG CCATCACTGGGGGCCGAAACCTGTCCCAGGAGCCGTCACAG < 41bp 0.865770726425 0.52776399793091 0.913479 0.8408563 prediction 0.676013456988179 Functional Loss - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18138811 chr17:18138814 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_50618 0 0 1 0 2 LLGL1 chr17:18138784 3'AG 18138784 Downstream 31bp
chr17 18138814 18138814 1 + G T rs186995213 18138811 + 18138791 18138831 41 CCATCACTGGGGGCCGAAACCTGGCCCAGGAGCCGTCACAG CCATCACTGGGGGCCGAAACCTGTCCCAGGAGCCGTCACAG < 41bp 0.865770726425 0.52776399793091 0.913479 0.8408563 prediction 0.676013456988179 Functional Loss - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18138811 chr17:18138814 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_50618 0 0 1 0 2 LLGL1 chr17:18138851 5'GT 18138851 Upstream 38bp
chr11 57428335 57428335 1 + G T UCEC 57428332 + 57428312 57428352 41 ATTAACACCTGTGGCTGGGTCAAGGGCTCTGGTTACCAGGC ATTAACACCTGTGGCTGGGTCAATGGCTCTGGTTACCAGGC < 41bp 0.857517195759128 0.519551835415058 0.5292797 0.12740517 prediction 0.67593072068814 Functional Loss - CLP1 ENSG00000172409 CDS Human protein_coding chr11:57428332 chr11:57428335 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_50619 0 0 0 0 1 CLP1 chr11:57428237 3'AG 57428237 Downstream 99bp
chr1 9613740 9613740 1 + G T COAD 9613737 + 9613717 9613757 41 TCCACTAGAAGTCATTAAGACACGGTTGCAGTCTTCAAGAT TCCACTAGAAGTCATTAAGACACTGTTGCAGTCTTCAAGAT < 41bp 0.845552834942005 0.507598358999532 0.21201879 0.085814774 prediction 0.675908951884945 Functional Loss - SLC25A33 ENSG00000171612 CDS Human protein_coding chr1:9613737 chr1:9613740 nonsynonymous SNV 0.753 5 24 hm5C_associated_SNPs_50620 0 0 1 0 1 SLC25A33 chr1:9613684 3'AG 9613684 Downstream 57bp
chr9 133951327 133951327 1 + G T UCEC 133951324 + 133951304 133951344 41 TGCTGGAGGGAAGGGTGGCCCTAGAGACCCAGCGGGACCTG TGCTGGAGGGAAGGGTGGCCCTATAGACCCAGCGGGACCTG < 41bp 0.849294865246628 0.511353252215834 0.49194592 0.8168671 prediction 0.675883226061587 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133951324 chr9:133951327 stopgain 0.023 0 24 hm5C_associated_SNPs_50621 0 0 0 0 1 LAMC3 chr9:133951352 5'GT 133951352 Upstream 26bp
chr8 66989019 66989019 1 + A C HNSC 66989015 + 66988995 66989035 41 ATTTCAAAGAGAAGCATATACGACAAGTACGGATCGCTGGG ATTTCAAAGAGAAGCATATACGACCAGTACGGATCGCTGGG < 41bp 0.879040722902533 0.541189946880269 0.21893823 0.23860833 prediction 0.675701552044528 Functional Loss - DNAJC5B ENSG00000147570 CDS Human protein_coding chr8:66989015 chr8:66989019 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_50625 0 0 0 1 1 DNAJC5B chr8:66989108 5'GT 66989108 Upstream 90bp
chr17 9497613 9497613 1 + G T GBM 9497610 + 9497590 9497630 41 ATGTGATCTTCTCCAGGTGCCGGGATGAGATGTTTATGACT ATGTGATCTTCTCCAGGTGCCGGTATGAGATGTTTATGACT < 41bp 0.837838847820492 0.485918728923744 0.877869 0.19364446 prediction 0.675677695640985 Functional Loss - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9497610 chr17:9497613 nonsynonymous SNV 0.700 4 24 hm5C_associated_SNPs_50626 0 0 0 0 1 CFAP52 chr17:9497638 5'GT 9497638 Upstream 26bp
chr16 30594682 30594682 1 - C A LUSC 30594685 - 30594665 30594705 41 GTGGCGCATGAAGTGGCTGTCAAGGAGTGGTGGCCCAGCGT GTGGCGCATGAAGTGGCTGTCAATGAGTGGTGGCCCAGCGT < 41bp 0.837793587910699 0.476339305842701 0.9046137 0.24598062 prediction 0.675587175821399 Functional Loss - ZNF785 ENSG00000197162 CDS Human protein_coding chr16:30594685 chr16:30594682 nonsynonymous SNV 0.463 0 24 hm5C_associated_SNPs_50628 0 0 1 0 1 ZNF785 chr16:30594764 3'AG 30594764 Downstream 83bp
chr7 2646824 2646824 1 + G T UCEC 2646821 + 2646801 2646841 41 AGATCGGCTTCAGCCACACACGGGGACGCCTCCTCCCCACC AGATCGGCTTCAGCCACACACGGTGACGCCTCCTCCCCACC < 41bp 0.837788868335773 0.471601953310265 0.95675266 0.57339644 prediction 0.675577736671546 Functional Loss - IQCE ENSG00000106012 CDS Human protein_coding chr7:2646821 chr7:2646824 synonymous SNV . 0 24 hm5C_associated_SNPs_50629 0 0 0 0 2 IQCE chr7:2646758 3'AG 2646758 Downstream 67bp
chr7 2646824 2646824 1 + G T UCEC 2646821 + 2646801 2646841 41 AGATCGGCTTCAGCCACACACGGGGACGCCTCCTCCCCACC AGATCGGCTTCAGCCACACACGGTGACGCCTCCTCCCCACC < 41bp 0.837788868335773 0.471601953310265 0.95675266 0.57339644 prediction 0.675577736671546 Functional Loss - IQCE ENSG00000106012 CDS Human protein_coding chr7:2646821 chr7:2646824 synonymous SNV . 0 24 hm5C_associated_SNPs_50629 0 0 0 0 2 IQCE chr7:2646861 5'GT 2646861 Upstream 38bp
chr19 43859874 43859874 1 + A C SKCM 43859870 + 43859850 43859890 41 GGAAGGCTGTCTGGAGGGGACAACAGAAGAGATCTGCCCCA GGAAGGCTGTCTGGAGGGGACAACCGAAGAGATCTGCCCCA < 41bp 0.837756141385039 0.468016600882546 0.5236325 0.35478023 prediction 0.675512282770079 Functional Loss - CD177 ENSG00000204936 CDS Human protein_coding chr19:43859870 chr19:43859874 synonymous SNV . 0 25 hm5C_associated_SNPs_50633 0 0 0 0 2 CD177 chr19:43859813 3'AG 43859813 Downstream 62bp
chr19 43859874 43859874 1 + A C SKCM 43859870 + 43859850 43859890 41 GGAAGGCTGTCTGGAGGGGACAACAGAAGAGATCTGCCCCA GGAAGGCTGTCTGGAGGGGACAACCGAAGAGATCTGCCCCA < 41bp 0.837756141385039 0.468016600882546 0.5236325 0.35478023 prediction 0.675512282770079 Functional Loss - CD177 ENSG00000204936 CDS Human protein_coding chr19:43859870 chr19:43859874 synonymous SNV . 0 25 hm5C_associated_SNPs_50633 0 0 0 0 2 CD177 chr19:43859935 5'GT 43859935 Upstream 62bp
chr20 44642416 44642416 1 + G T UCEC 44642413 + 44642393 44642433 41 GTCTTTGAGGAGCGGCTCTCCAAGAAGCTTTTCTTCTTCTC GTCTTTGAGGAGCGGCTCTCCAATAAGCTTTTCTTCTTCTC < 41bp 0.851992805360064 0.5142429051301 0.6549493 0.037635952 prediction 0.675499800459927 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44642413 chr20:44642416 nonsynonymous SNV 0.928 1 24 hm5C_associated_SNPs_50634 0 0 0 0 1 MMP9 chr20:44642435 5'GT 44642435 Upstream 20bp
chr17 41179292 41179292 1 + G T LAML 41179289 + 41179269 41179309 41 ACATTAGCCGACCAGAAACACTGGACAGTGTTCTCAAGAAG ACATTAGCCGACCAGAAACACTGTACAGTGTTCTCAAGAAG < 41bp 0.851794460531577 0.514045313309626 0.60595644 0.42255968 prediction 0.675498294443902 Functional Loss - RND2 ENSG00000108830 CDS Human protein_coding chr17:41179289 chr17:41179292 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_50635 0 0 0 0 2 RND2 chr17:41179200 3'AG 41179200 Downstream 93bp
chr17 41179292 41179292 1 + G T LAML 41179289 + 41179269 41179309 41 ACATTAGCCGACCAGAAACACTGGACAGTGTTCTCAAGAAG ACATTAGCCGACCAGAAACACTGTACAGTGTTCTCAAGAAG < 41bp 0.851794460531577 0.514045313309626 0.60595644 0.42255968 prediction 0.675498294443902 Functional Loss - RND2 ENSG00000108830 CDS Human protein_coding chr17:41179289 chr17:41179292 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_50635 0 0 0 0 2 RND2 chr17:41179309 5'GT 41179309 Upstream 18bp
chr1 209907747 209907747 1 + G T UCEC 209907744 + 209907724 209907764 41 TCAAAGGGGGAGCTCTGCGCCAAGAAGAAGTGTATTATGAC TCAAAGGGGGAGCTCTGCGCCAATAAGAAGTGTATTATGAC < 41bp 0.83889550284666 0.501176040942392 0.11644021 0.14417592 prediction 0.675438923808536 Functional Loss - HSD11B1 ENSG00000117594 CDS Human protein_coding chr1:209907744 chr1:209907747 stopgain 0.705 0 24 hm5C_associated_SNPs_50636 0 0 0 0 1 HSD11B1 chr1:209907649 3'AG 209907649 Downstream 99bp
chr11 65047061 65047061 1 + G T UCEC 65047058 + 65047038 65047078 41 AGCGAACTCAAGGAACATTACAAGATTGAAGCTTTCACTCC AGCGAACTCAAGGAACATTACAATATTGAAGCTTTCACTCC < 41bp 0.851545112885315 0.51383219101613 0.58872944 0.12129471 prediction 0.67542584373837 Functional Loss - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65047058 chr11:65047061 nonsynonymous SNV 0.970 0 24 hm5C_associated_SNPs_50637 0 0 1 0 2 POLA2 chr11:65047009 3'AG 65047009 Downstream 53bp
chr11 65047061 65047061 1 + G T UCEC 65047058 + 65047038 65047078 41 AGCGAACTCAAGGAACATTACAAGATTGAAGCTTTCACTCC AGCGAACTCAAGGAACATTACAATATTGAAGCTTTCACTCC < 41bp 0.851545112885315 0.51383219101613 0.58872944 0.12129471 prediction 0.67542584373837 Functional Loss - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65047058 chr11:65047061 nonsynonymous SNV 0.970 0 24 hm5C_associated_SNPs_50637 0 0 1 0 2 POLA2 chr11:65047097 5'GT 65047097 Upstream 37bp
chr1 43162873 43162873 1 + G T rs148020196 43162870 + 43162850 43162890 41 GGGTGCTGACAACCAGGGTGCAGGAGAACAAGGTAGACCAG GGGTGCTGACAACCAGGGTGCAGTAGAACAAGGTAGACCAG < 41bp 0.846492148034944 0.508787832440877 0.94133365 0.91659796 prediction 0.675408631188134 Functional Loss - YBX1 ENSG00000065978 CDS Human protein_coding chr1:43162870 chr1:43162873 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50638 0 0 1 0 1 YBX1 chr1:43162933 5'GT 43162933 Upstream 61bp
chr16 2125865 2125865 1 + A C SKCM 2125861 + 2125841 2125881 41 GAGCAGTATGCCAGTGTGTTCGCCATCTCCCTGCCGTACAC GAGCAGTATGCCAGTGTGTTCGCCCTCTCCCTGCCGTACAC < 41bp 0.837655738749697 0.466064764069717 0.09748882 0.058916807 prediction 0.675311477499395 Functional Loss - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2125861 chr16:2125865 nonsynonymous SNV 0.993 3 25 hm5C_associated_SNPs_50641 0 0 0 0 2 TSC2 chr16:2125800 3'AG 2125800 Downstream 66bp
chr16 2125865 2125865 1 + A C SKCM 2125861 + 2125841 2125881 41 GAGCAGTATGCCAGTGTGTTCGCCATCTCCCTGCCGTACAC GAGCAGTATGCCAGTGTGTTCGCCCTCTCCCTGCCGTACAC < 41bp 0.837655738749697 0.466064764069717 0.09748882 0.058916807 prediction 0.675311477499395 Functional Loss - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2125861 chr16:2125865 nonsynonymous SNV 0.993 3 25 hm5C_associated_SNPs_50641 0 0 0 0 2 TSC2 chr16:2125893 5'GT 2125893 Upstream 29bp
chr1 33354552 33354552 1 + A C UCEC 33354548 + 33354528 33354568 41 CCGAGATGTTGCAGGACCTGCGAGAGAACACAGAGTTCTCA CCGAGATGTTGCAGGACCTGCGAGCGAACACAGAGTTCTCA < 41bp 0.854774985357712 0.517225915921561 0.8326061 0.60489863 prediction 0.675098138872303 Functional Loss - HPCA ENSG00000121905 CDS Human protein_coding chr1:33354548 chr1:33354552 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_50643 0 0 0 0 1 HPCA chr1:33354479 3'AG 33354479 Downstream 74bp
chr3 183906570 183906570 1 + A C LUSC 183906566 + 183906546 183906586 41 CAGGGCGGAGGGCTCTGAAGCTGCAGAGCTGGCAGAAATCT CAGGGCGGAGGGCTCTGAAGCTGCCGAGCTGGCAGAAATCT < 41bp 0.837518940773226 0.44668208198132 0.385359 0.2996084 prediction 0.675037881546452 Functional Loss - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183906566 chr3:183906570 synonymous SNV . 0 25 hm5C_associated_SNPs_50644 0 0 1 0 2 ABCF3 chr3:183906549 3'AG 183906549 Downstream 22bp
chr3 183906570 183906570 1 + A C LUSC 183906566 + 183906546 183906586 41 CAGGGCGGAGGGCTCTGAAGCTGCAGAGCTGGCAGAAATCT CAGGGCGGAGGGCTCTGAAGCTGCCGAGCTGGCAGAAATCT < 41bp 0.837518940773226 0.44668208198132 0.385359 0.2996084 prediction 0.675037881546452 Functional Loss - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183906566 chr3:183906570 synonymous SNV . 0 25 hm5C_associated_SNPs_50644 0 0 1 0 2 ABCF3 chr3:183906629 5'GT 183906629 Upstream 60bp
chrX 70523162 70523162 1 + A C UCEC 70523158 + 70523138 70523178 41 CGCTAAATATATCCCAAGCCCTGGAAATGGCATTGGAACAG CGCTAAATATATCCCAAGCCCTGGCAATGGCATTGGAACAG < 41bp 0.884528536855101 0.547085073397357 0.29481822 0.17878768 prediction 0.674886926915487 Functional Loss - ITGB1BP2 ENSG00000147166 CDS Human protein_coding chrX:70523158 chrX:70523162 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_50645 0 0 1 0 2 ITGB1BP2 chrX:70523112 3'AG 70523112 Downstream 51bp
chrX 70523162 70523162 1 + A C UCEC 70523158 + 70523138 70523178 41 CGCTAAATATATCCCAAGCCCTGGAAATGGCATTGGAACAG CGCTAAATATATCCCAAGCCCTGGCAATGGCATTGGAACAG < 41bp 0.884528536855101 0.547085073397357 0.29481822 0.17878768 prediction 0.674886926915487 Functional Loss - ITGB1BP2 ENSG00000147166 CDS Human protein_coding chrX:70523158 chrX:70523162 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_50645 0 0 1 0 2 ITGB1BP2 chrX:70523206 5'GT 70523206 Upstream 45bp
chr19 1255487 1255487 1 + A C LUSC 1255483 + 1255463 1255503 41 GGCGTGACATCGGCACCATCCTGCAGATCCTGAACGACCTC GGCGTGACATCGGCACCATCCTGCCGATCCTGAACGACCTC < 41bp 0.881320530493888 0.543909314480967 0.2341322 0.22536063 prediction 0.674822432025841 Functional Loss - MIDN ENSG00000167470 CDS Human protein_coding chr19:1255483 chr19:1255487 nonsynonymous SNV 0.941 2 25 hm5C_associated_SNPs_50647 0 0 1 0 1 MIDN chr19:1255421 3'AG 1255421 Downstream 67bp
chr4 145628384 145628384 1 + G T LUAD 145628381 + 145628361 145628401 41 TTGGTGATGGGATGATTACACTGGATGATATGGAAGAAATG TTGGTGATGGGATGATTACACTGTATGATATGGAAGAAATG < 41bp 0.838998075116293 0.501593484664582 0.20175579 0.12108752 prediction 0.674809180903423 Functional Loss - HHIP ENSG00000164161 CDS Human protein_coding chr4:145628381 chr4:145628384 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_50648 0 0 0 0 1 HHIP chr4:145628412 5'GT 145628412 Upstream 29bp
chr10 118314719 118314719 1 + G T LUSC 118314716 + 118314696 118314736 41 ACCCAGCAGAACCTTGCTTTCAGGGCACACCTGAATTAGTC ACCCAGCAGAACCTTGCTTTCAGTGCACACCTGAATTAGTC < 41bp 0.850033921600633 0.512659302458089 0.92992973 0.3835035 prediction 0.674749238285087 Functional Loss - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314716 chr10:118314719 nonsynonymous SNV 0.881 4 24 hm5C_associated_SNPs_50650 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 91bp
chr17 40818429 40818429 1 + G T PRAD 40818426 + 40818406 40818446 41 CAGCATCCAGGTGGCCCTGTCGAGGAAGTCTCCCTACCTGC CAGCATCCAGGTGGCCCTGTCGATGAAGTCTCCCTACCTGC < 41bp 0.859249154446693 0.521912773093898 0.92215705 0.2109097 prediction 0.67467276270559 Functional Loss - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40818426 chr17:40818429 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_50653 0 0 0 0 2 TUBG2 chr17:40818341 3'AG 40818341 Downstream 89bp
chr17 40818429 40818429 1 + G T PRAD 40818426 + 40818406 40818446 41 CAGCATCCAGGTGGCCCTGTCGAGGAAGTCTCCCTACCTGC CAGCATCCAGGTGGCCCTGTCGATGAAGTCTCCCTACCTGC < 41bp 0.859249154446693 0.521912773093898 0.92215705 0.2109097 prediction 0.67467276270559 Functional Loss - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40818426 chr17:40818429 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_50653 0 0 0 0 2 TUBG2 chr17:40818502 5'GT 40818502 Upstream 74bp
chr9 140120100 140120100 1 + G T COAD 140120097 + 140120077 140120117 41 GACCCCCAAGAGATGGTCGTCAAGAACCCATATGCCCACAT GACCCCCAAGAGATGGTCGTCAATAACCCATATGCCCACAT < 41bp 0.837302518876753 0.497741693475852 0.7361229 0.13070133 prediction 0.674605037753507 Functional Loss - CYSRT1 ENSG00000197191 CDS Human protein_coding chr9:140120097 chr9:140120100 nonsynonymous SNV 0.985 1 24 hm5C_associated_SNPs_50654 0 0 0 0 1 CYSRT1 chr9:140120066 3'AG 140120066 Downstream 35bp
chr1 20416319 20416319 1 + G T UCEC 20416316 + 20416296 20416336 41 ATGACCACTGCTATGGGCGGCTGGAGGAGAAGGGCTGCAAC ATGACCACTGCTATGGGCGGCTGTAGGAGAAGGGCTGCAAC < 41bp 0.837285415925554 0.483821099142827 0.88527274 0.8169744 prediction 0.674570831851109 Functional Loss - PLA2G5 ENSG00000127472 CDS Human protein_coding chr1:20416316 chr1:20416319 stopgain 0.286 0 24 hm5C_associated_SNPs_50655 0 0 0 0 2 PLA2G5 chr1:20416282 3'AG 20416282 Downstream 38bp
chr1 20416319 20416319 1 + G T UCEC 20416316 + 20416296 20416336 41 ATGACCACTGCTATGGGCGGCTGGAGGAGAAGGGCTGCAAC ATGACCACTGCTATGGGCGGCTGTAGGAGAAGGGCTGCAAC < 41bp 0.837285415925554 0.483821099142827 0.88527274 0.8169744 prediction 0.674570831851109 Functional Loss - PLA2G5 ENSG00000127472 CDS Human protein_coding chr1:20416316 chr1:20416319 stopgain 0.286 0 24 hm5C_associated_SNPs_50655 0 0 0 0 2 PLA2G5 chr1:20416388 5'GT 20416388 Upstream 70bp
chr6 167591995 167591995 1 + G T LUAD 167591992 + 167591972 167592012 41 CACCCACTGGAAGGCCGACTCCCGGTGCAGAAAGACGGGAG CACCCACTGGAAGGCCGACTCCCTGTGCAGAAAGACGGGAG < 41bp 0.837216814264897 0.482571743960071 0.33067483 0.18015856 prediction 0.674433628529794 Functional Loss - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167591992 chr6:167591995 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_50656 0 0 0 0 1 TCP10L2 chr6:167592030 5'GT 167592030 Upstream 36bp
chr11 120097580 120097580 1 + A C KIRP 120097576 + 120097556 120097596 41 AGGTTCGGGGTCTGGAGCATCTGCACATGGATGTCGCTGTC AGGTTCGGGGTCTGGAGCATCTGCCCATGGATGTCGCTGTC < 41bp 0.883626077494194 0.546449366381115 0.5345366 0.30942762 prediction 0.674353422226159 Functional Loss - OAF ENSG00000184232 CDS Human protein_coding chr11:120097576 chr11:120097580 nonsynonymous SNV 0.930 0 25 hm5C_associated_SNPs_50657 0 0 1 0 1 OAF chr11:120097525 3'AG 120097525 Downstream 56bp
chr16 30389122 30389122 1 + G T READ 30389119 + 30389099 30389139 41 CCCTACGTCTTTCCCCAGATCAAGAACATGTGGGCGGCCTT CCCTACGTCTTTCCCCAGATCAATAACATGTGGGCGGCCTT < 41bp 0.859705777735796 0.522542614861726 0.63836527 0.14375561 prediction 0.674326325748139 Functional Loss - MYLPF ENSG00000180209 CDS Human protein_coding chr16:30389119 chr16:30389122 nonsynonymous SNV 0.959 1 24 hm5C_associated_SNPs_50660 0 0 0 0 1 MYLPF chr16:30389117 3'AG 30389117 Downstream 6bp
chr10 22678130 22678130 1 + G T LUAD 22678127 + 22678107 22678147 41 AACGCAGGAGGGGTTGCTGCCGTGATTGACTGCATTGGGTC AACGCAGGAGGGGTTGCTGCCGTTATTGACTGCATTGGGTC < 41bp 0.850505577636905 0.51335946837292 0.28290927 0.10810092 prediction 0.674292218527972 Functional Loss - SPAG6 ENSG00000077327 CDS Human protein_coding chr10:22678127 chr10:22678130 synonymous SNV . 0 24 hm5C_associated_SNPs_50661 0 0 0 0 1 SPAG6 chr10:22678089 3'AG 22678089 Downstream 42bp
chr16 27367221 27367221 1 + A C PRAD 27367217 + 27367197 27367237 41 GTCTGCCTGTTGTGCTATGTCAGCATCACCAAGTGAGTCCT GTCTGCCTGTTGTGCTATGTCAGCCTCACCAAGTGAGTCCT < 41bp 0.877673901191554 0.540533444049672 0.13347024 0.43495572 prediction 0.674280914283762 Functional Loss - IL4R ENSG00000077238 CDS Human protein_coding chr16:27367217 chr16:27367221 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_50662 0 0 1 0 2 IL4R chr16:27367129 3'AG 27367129 Downstream 93bp
chr16 27367221 27367221 1 + A C PRAD 27367217 + 27367197 27367237 41 GTCTGCCTGTTGTGCTATGTCAGCATCACCAAGTGAGTCCT GTCTGCCTGTTGTGCTATGTCAGCCTCACCAAGTGAGTCCT < 41bp 0.877673901191554 0.540533444049672 0.13347024 0.43495572 prediction 0.674280914283762 Functional Loss - IL4R ENSG00000077238 CDS Human protein_coding chr16:27367217 chr16:27367221 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_50662 0 0 1 0 2 IL4R chr16:27367228 5'GT 27367228 Upstream 8bp
chrX 130218915 130218915 1 + G T LUSC 130218912 + 130218892 130218932 41 GTGAAGAATTTGATCAAGGTCTGGATGTAGTGCTGGATGAC GTGAAGAATTTGATCAAGGTCTGTATGTAGTGCTGGATGAC < 41bp 0.837122468891658 0.484801200589692 0.10837093 0.04272607 prediction 0.674244937783316 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130218912 chrX:130218915 nonsynonymous SNV 0.971 4 24 hm5C_associated_SNPs_50663 0 0 0 0 1 ARHGAP36 chrX:130218888 3'AG 130218888 Downstream 28bp
chrX 37965974 37965974 1 + G T DLBC 37965971 + 37965951 37965991 41 GGTGGGCTGTACATTTTTGTCAAGAATTGCAGAAATCTGGC GGTGGGCTGTACATTTTTGTCAATAATTGCAGAAATCTGGC < 41bp 0.837118880564417 0.498497067155514 0.3573747 0.20878342 prediction 0.674237761128834 Functional Loss - SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37965971 chrX:37965974 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50664 0 0 1 0 1 SYTL5 chrX:37966024 5'GT 37966024 Upstream 51bp
chr16 3338556 3338556 1 + G T PAAD 3338553 + 3338533 3338573 41 CTGCAAGGAGGGCCTGAGCCCCAGAGGCCCAGCTCCAGGTA CTGCAAGGAGGGCCTGAGCCCCATAGGCCCAGCTCCAGGTA < 41bp 0.856070671332233 0.518995542293269 0.837221 0.10945287 prediction 0.674150258077928 Functional Loss - ZNF263 ENSG00000006194 CDS Human protein_coding chr16:3338553 chr16:3338556 nonsynonymous SNV 0.034 0 24 hm5C_associated_SNPs_50669 0 0 1 0 1 ZNF263 chr16:3338570 5'GT 3338570 Upstream 15bp
chr1 148933317 148933317 1 + G T UCEC 148933314 + 148933294 148933334 41 ATTGTGGCTGGAGACATGAGCAAGAAAAGCCTCTGGGAGCA ATTGTGGCTGGAGACATGAGCAATAAAAGCCTCTGGGAGCA < 41bp 0.839955950156259 0.502888829899768 0.8550311 0.43084428 prediction 0.674134240512981 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148933314 chr1:148933317 . . 0 24 hm5C_associated_SNPs_50672 0 0 0 2 2 LOC645166 chr1:148933291 3'AG 148933291 Downstream 27bp
chr1 148933317 148933317 1 + G T UCEC 148933314 + 148933294 148933334 41 ATTGTGGCTGGAGACATGAGCAAGAAAAGCCTCTGGGAGCA ATTGTGGCTGGAGACATGAGCAATAAAAGCCTCTGGGAGCA < 41bp 0.839955950156259 0.502888829899768 0.8550311 0.43084428 prediction 0.674134240512981 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148933314 chr1:148933317 . . 0 24 hm5C_associated_SNPs_50672 0 0 0 2 2 LOC645166 chr1:148933368 5'GT 148933368 Upstream 52bp
chr17 6927467 6927467 1 + G T UCEC 6927464 + 6927444 6927484 41 GGTGGACGTGCTCTCTCTGCCCGGGGGTCCCGAAGCGAGAG GGTGGACGTGCTCTCTCTGCCCGTGGGTCCCGAAGCGAGAG < 41bp 0.867269342481964 0.530253240136002 0.9368011 0.16763231 prediction 0.674032204691925 Functional Loss - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6927464 chr17:6927467 nonsynonymous SNV 0.677 0 24 hm5C_associated_SNPs_50676 0 0 0 0 1 BCL6B chr17:6927402 3'AG 6927402 Downstream 66bp
chr10 126515238 126515238 1 + G T SARC 126515235 + 126515215 126515255 41 TACAGAGAGCAGGTTCTTCACAAGCAGCTCACCCGCATCCT TACAGAGAGCAGGTTCTTCACAATCAGCTCACCCGCATCCT < 41bp 0.836959594499022 0.48399218927163 0.2129499 0.10421747 prediction 0.673919188998043 Functional Loss - ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126515235 chr10:126515238 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_50677 0 0 0 0 1 ABRAXAS2 chr10:126515164 3'AG 126515164 Downstream 75bp
chr19 14676021 14676021 1 + G T UCEC 14676018 + 14675998 14676038 41 CTGTCCTGCCTGCCAGGGTCCAAGACGCGGAAGATCCCATA CTGTCCTGCCTGCCAGGGTCCAATACGCGGAAGATCCCATA < 41bp 0.836949183846617 0.492065990096171 0.16882002 0.1122154 prediction 0.673898367693233 Functional Loss - TECR ENSG00000099797 CDS Human protein_coding chr19:14676018 chr19:14676021 nonsynonymous SNV 0.986 3 24 hm5C_associated_SNPs_50678 0 0 1 0 1 TECR chr19:14676102 5'GT 14676102 Upstream 82bp
chr9 91930187 91930187 1 + G T BLCA 91930184 + 91930164 91930204 41 GGTGTCCAACAGAGTCTAGGCTGGGTTCATTACATGATTCA GGTGTCCAACAGAGTCTAGGCTGTGTTCATTACATGATTCA < 41bp 0.836946747091832 0.492973951870296 0.39216775 0.1302199 prediction 0.673893494183664 Functional Loss - CKS2 ENSG00000123975 CDS Human protein_coding chr9:91930184 chr9:91930187 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50679 0 0 1 0 1 CKS2 chr9:91930212 5'GT 91930212 Upstream 26bp
chr12 49153076 49153076 1 + G T OV 49153073 + 49153053 49153093 41 CGTGCACCAGAATAGCCACACAAGATACCACGAAGCTGTCC CGTGCACCAGAATAGCCACACAATATACCACGAAGCTGTCC < 41bp 0.836945869642101 0.487048821422573 0.25684923 0.32014725 prediction 0.673891739284203 Functional Loss - TEX49 ENSG00000257987 CDS Human protein_coding chr12:49153073 chr12:49153076 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_50680 0 0 0 0 2 TEX49 chr12:49152992 3'AG 49152992 Downstream 85bp
chr12 49153076 49153076 1 + G T OV 49153073 + 49153053 49153093 41 CGTGCACCAGAATAGCCACACAAGATACCACGAAGCTGTCC CGTGCACCAGAATAGCCACACAATATACCACGAAGCTGTCC < 41bp 0.836945869642101 0.487048821422573 0.25684923 0.32014725 prediction 0.673891739284203 Functional Loss - TEX49 ENSG00000257987 CDS Human protein_coding chr12:49153073 chr12:49153076 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_50680 0 0 0 0 2 TEX49 chr12:49153114 5'GT 49153114 Upstream 39bp
chr11 20398150 20398150 1 + G T UCEC 20398147 + 20398127 20398167 41 AGGGATTTGTTCGTGTTGACCGAGATTATGTGCTGAAGTCT AGGGATTTGTTCGTGTTGACCGATATTATGTGCTGAAGTCT < 41bp 0.857921856727917 0.520982787647929 0.33392423 0.21173733 prediction 0.673878138159975 Functional Loss - HTATIP2 ENSG00000109854 CDS Human protein_coding chr11:20398147 chr11:20398150 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50682 0 0 1 0 1 HTATIP2 chr11:20398126 3'AG 20398126 Downstream 25bp
chr19 57795936 57795936 1 + G T UCEC 57795933 + 57795913 57795953 41 TTTCAGGAGTCTGTGACCTTCGAGGATGTGGCTGTGACATT TTTCAGGAGTCTGTGACCTTCGATGATGTGGCTGTGACATT < 41bp 0.836905116800243 0.491137819909499 0.8557915 0.09450278 prediction 0.673810233600486 Functional Loss - ZNF460 ENSG00000197714 CDS Human protein_coding chr19:57795933 chr19:57795936 nonsynonymous SNV 0.746 0 24 hm5C_associated_SNPs_50683 0 0 1 0 1 ZNF460 chr19:57795919 3'AG 57795919 Downstream 18bp
chr7 31015455 31015455 1 + G T LUSC 31015452 + 31015432 31015472 41 TGAGGAAACTGGAGCCAGCTCAGGGCAGCCTCCATACCCAG TGAGGAAACTGGAGCCAGCTCAGTGCAGCCTCCATACCCAG < 41bp 0.872229150194853 0.535331351353944 0.9455959 0.32513583 prediction 0.673795597681818 Functional Loss - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31015452 chr7:31015455 nonsynonymous SNV 0.983 2 24 hm5C_associated_SNPs_50684 0 0 0 0 2 GHRHR chr7:31015392 3'AG 31015392 Downstream 64bp
chr7 31015455 31015455 1 + G T LUSC 31015452 + 31015432 31015472 41 TGAGGAAACTGGAGCCAGCTCAGGGCAGCCTCCATACCCAG TGAGGAAACTGGAGCCAGCTCAGTGCAGCCTCCATACCCAG < 41bp 0.872229150194853 0.535331351353944 0.9455959 0.32513583 prediction 0.673795597681818 Functional Loss - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31015452 chr7:31015455 nonsynonymous SNV 0.983 2 24 hm5C_associated_SNPs_50684 0 0 0 0 2 GHRHR chr7:31015483 5'GT 31015483 Upstream 29bp
chr17 46023331 46023331 1 + G T STAD 46023328 + 46023308 46023348 41 ATTGGGGCTGTGGTCAGCCACCAGAGTTCTGTGATCCCTGA ATTGGGGCTGTGGTCAGCCACCATAGTTCTGTGATCCCTGA < 41bp 0.836884948756093 0.493213673868725 0.42962456 0.07077083 prediction 0.673769897512185 Functional Loss - PNPO ENSG00000108439 CDS Human protein_coding chr17:46023328 chr17:46023331 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50685 0 0 1 0 1 PNPO chr17:46023355 5'GT 46023355 Upstream 25bp
chr10 116020987 116020987 1 + G T UCEC 116020984 + 116020964 116021004 41 AGTTCAGTTCCACTCCTCATCTGGAATTCCCCTTGGATTCA AGTTCAGTTCCACTCCTCATCTGTAATTCCCCTTGGATTCA < 41bp 0.836843162508898 0.48399883554259 0.28625447 0.074527234 prediction 0.673686325017796 Functional Loss - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116020984 chr10:116020987 stopgain 1.000 1 24 hm5C_associated_SNPs_50686 0 0 1 0 2 VWA2 chr10:116020945 3'AG 116020945 Downstream 43bp
chr10 116020987 116020987 1 + G T UCEC 116020984 + 116020964 116021004 41 AGTTCAGTTCCACTCCTCATCTGGAATTCCCCTTGGATTCA AGTTCAGTTCCACTCCTCATCTGTAATTCCCCTTGGATTCA < 41bp 0.836843162508898 0.48399883554259 0.28625447 0.074527234 prediction 0.673686325017796 Functional Loss - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116020984 chr10:116020987 stopgain 1.000 1 24 hm5C_associated_SNPs_50686 0 0 1 0 2 VWA2 chr10:116021054 5'GT 116021054 Upstream 68bp
chrX 47107098 47107098 1 + G T LUAD 47107095 + 47107075 47107115 41 CCTGTCAATGAGAATCAGATCGAGGTGTGACTTCCATCCTA CCTGTCAATGAGAATCAGATCGATGTGTGACTTCCATCCTA < 41bp 0.857245160857155 0.520427575904736 0.92172915 0.19420046 prediction 0.673635169904838 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47107095 chrX:47107098 nonsynonymous SNV 0.970 1 24 hm5C_associated_SNPs_50688 0 0 1 0 2 USP11 chrX:47107010 3'AG 47107010 Downstream 89bp
chrX 47107098 47107098 1 + G T LUAD 47107095 + 47107075 47107115 41 CCTGTCAATGAGAATCAGATCGAGGTGTGACTTCCATCCTA CCTGTCAATGAGAATCAGATCGATGTGTGACTTCCATCCTA < 41bp 0.857245160857155 0.520427575904736 0.92172915 0.19420046 prediction 0.673635169904838 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47107095 chrX:47107098 nonsynonymous SNV 0.970 1 24 hm5C_associated_SNPs_50688 0 0 1 0 2 USP11 chrX:47107098 5'GT 47107098 Upstream 1bp
chr1 111860327 111860327 1 + G T rs143586120 111860324 + 111860304 111860344 41 AAATGCGTGAAGCTTTTGAGCAGGAGGCCAAGCAGATCAAC AAATGCGTGAAGCTTTTGAGCAGTAGGCCAAGCAGATCAAC < 41bp 0.84270017775324 0.505951584063577 0.8151889 0.22118658 prediction 0.673497187379325 Functional Loss - CHIA ENSG00000134216 CDS Human protein_coding chr1:111860324 chr1:111860327 stopgain 0.994 0 24 hm5C_associated_SNPs_50691 0 0 0 0 1 CHIA chr1:111860303 3'AG 111860303 Downstream 25bp
chrX 67940801 67940801 1 + G T UCEC 67940798 + 67940778 67940818 41 CGCAAGTCTGGGGTCAAGTCCAGGATCCAGAACCTGCGTCA CGCAAGTCTGGGGTCAAGTCCAGTATCCAGAACCTGCGTCA < 41bp 0.836743151691856 0.469450166450573 0.89365983 0.7212579 prediction 0.673486303383712 Functional Loss - STARD8 ENSG00000130052 CDS Human protein_coding chrX:67940798 chrX:67940801 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50692 0 0 0 0 1 STARD8 chrX:67940766 3'AG 67940766 Downstream 36bp
chr8 2024303 2024303 1 + G T rs529946883 2024300 + 2024280 2024320 41 GCCAACCGGGACTACGTCATCGTGACCTGGAAGCCGCCCAA GCCAACCGGGACTACGTCATCGTTACCTGGAAGCCGCCCAA < 41bp 0.836738219364195 0.48684359628232 0.42966118 0.12638125 prediction 0.673476438728389 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2024300 chr8:2024303 synonymous SNV . 0 24 hm5C_associated_SNPs_50693 0 0 0 0 2 MYOM2 chr8:2024221 3'AG 2024221 Downstream 83bp
chr8 2024303 2024303 1 + G T rs529946883 2024300 + 2024280 2024320 41 GCCAACCGGGACTACGTCATCGTGACCTGGAAGCCGCCCAA GCCAACCGGGACTACGTCATCGTTACCTGGAAGCCGCCCAA < 41bp 0.836738219364195 0.48684359628232 0.42966118 0.12638125 prediction 0.673476438728389 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2024300 chr8:2024303 synonymous SNV . 0 24 hm5C_associated_SNPs_50693 0 0 0 0 2 MYOM2 chr8:2024362 5'GT 2024362 Upstream 60bp
chr20 55905029 55905029 1 + A C rs28368062 55905025 + 55905005 55905045 41 AGGAGAGGTGGCAGGGAGCCCCCAACTGGGGGAAGCCGCCT AGGAGAGGTGGCAGGGAGCCCCCACCTGGGGGAAGCCGCCT < 41bp 0.83956709606029 0.502864422595085 0.8170781 0.24507362 prediction 0.67340534693041 Functional Loss - SPO11 ENSG00000054796 CDS Human protein_coding chr20:55905025 chr20:55905029 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_50694 0 0 0 0 1 SPO11 chr20:55905054 5'GT 55905054 Upstream 26bp
chr15 85431011 85431011 1 + G T UCEC 85431008 + 85430988 85431028 41 GGACATGGAGAACGACCCCTCGAGACGAAGAGAGTCCATCT GGACATGGAGAACGACCCCTCGATACGAAGAGAGTCCATCT < 41bp 0.85128069675203 0.514585505567937 0.88382125 0.33185542 prediction 0.673390382368185 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85431008 chr15:85431011 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_50695 0 0 1 0 2 SLC28A1 chr15:85430976 3'AG 85430976 Downstream 36bp
chr15 85431011 85431011 1 + G T UCEC 85431008 + 85430988 85431028 41 GGACATGGAGAACGACCCCTCGAGACGAAGAGAGTCCATCT GGACATGGAGAACGACCCCTCGATACGAAGAGAGTCCATCT < 41bp 0.85128069675203 0.514585505567937 0.88382125 0.33185542 prediction 0.673390382368185 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85431008 chr15:85431011 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_50695 0 0 1 0 2 SLC28A1 chr15:85431087 5'GT 85431087 Upstream 77bp
chr1 45479716 45479716 1 + G T SARC 45479713 + 45479693 45479733 41 CTGATGCTCTGGTCCCATATCTGGTAGGACAAGTGGTGGCT CTGATGCTCTGGTCCCATATCTGTTAGGACAAGTGGTGGCT < 41bp 0.836671285169848 0.487107429355463 0.40259132 0.09000558 prediction 0.673342570339696 Functional Loss - UROD ENSG00000126088 CDS Human protein_coding chr1:45479713 chr1:45479716 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_50696 0 0 1 0 1 UROD chr1:45479742 5'GT 45479742 Upstream 27bp
chr10 29581551 29581551 1 + G T OV 29581548 + 29581528 29581568 41 ATCTTCCAGATCAACAGCTTCGCGTGGTGCAGACGCGGAAA ATCTTCCAGATCAACAGCTTCGCTTGGTGCAGACGCGGAAA < 41bp 0.836663122354111 0.480249205972209 0.3609054 0.2749061 prediction 0.673326244708222 Functional Loss - LYZL1 ENSG00000120563 CDS Human protein_coding chr10:29581548 chr10:29581551 synonymous SNV . 0 24 hm5C_associated_SNPs_50697 0 0 0 0 1 LYZL1 chr10:29581606 5'GT 29581606 Upstream 56bp
chr18 60191545 60191545 1 + G T COAD 60191542 + 60191522 60191562 41 GCCGCGCTCCGCGGGGGCCCCGAGGACGCGGAGGTGGAGGT GCCGCGCTCCGCGGGGGCCCCGATGACGCGGAGGTGGAGGT < 41bp 0.840346789939632 0.503699896892557 0.91674 0.58128947 prediction 0.673293786094149 Functional Loss - ZCCHC2 ENSG00000141664 CDS Human protein_coding chr18:60191542 chr18:60191545 nonsynonymous SNV 0.890 0 24 hm5C_associated_SNPs_50698 0 0 1 0 1 ZCCHC2 chr18:60191596 5'GT 60191596 Upstream 52bp
chr11 32615476 32615476 1 + G T HNSC 32615473 + 32615453 32615493 41 ACACAGAGGACAATGCTTCCCAGGCTCGAGTTGATGCCCAC ACACAGAGGACAATGCTTCCCAGTCTCGAGTTGATGCCCAC < 41bp 0.836539778485962 0.484432927958504 0.33288032 0.027731806 prediction 0.673079556971924 Functional Loss - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32615473 chr11:32615476 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_50700 0 0 1 0 2 EIF3M chr11:32615412 3'AG 32615412 Downstream 65bp
chr11 32615476 32615476 1 + G T HNSC 32615473 + 32615453 32615493 41 ACACAGAGGACAATGCTTCCCAGGCTCGAGTTGATGCCCAC ACACAGAGGACAATGCTTCCCAGTCTCGAGTTGATGCCCAC < 41bp 0.836539778485962 0.484432927958504 0.33288032 0.027731806 prediction 0.673079556971924 Functional Loss - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32615473 chr11:32615476 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_50700 0 0 1 0 2 EIF3M chr11:32615495 5'GT 32615495 Upstream 20bp
chr18 61223532 61223532 1 + G T UCEC 61223529 + 61223509 61223549 41 TGGTATGGTACGCTTGGGTGCTAGAAGTGACAGTGCACATC TGGTATGGTACGCTTGGGTGCTATAAGTGACAGTGCACATC < 41bp 0.838029700289588 0.501589569766914 0.31520742 0.21022844 prediction 0.672880261045349 Functional Loss - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61223529 chr18:61223532 nonsynonymous SNV 0.050 5 24 hm5C_associated_SNPs_50707 0 0 0 0 1 SERPINB12 chr18:61223560 5'GT 61223560 Upstream 29bp
chr17 48185988 48185988 1 + G T UCEC 48185985 + 48185965 48186005 41 ATCTCTCCCAGATGAGTGACCGAGGTGGGGGTGTTCCCTTG ATCTCTCCCAGATGAGTGACCGATGTGGGGGTGTTCCCTTG < 41bp 0.836418893851573 0.46803765887322 0.9256644 0.6105081 prediction 0.672837787703146 Functional Loss - PDK2 ENSG00000005882 CDS Human protein_coding chr17:48185985 chr17:48185988 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50709 0 0 1 0 2 PDK2 chr17:48185976 3'AG 48185976 Downstream 13bp
chr17 48185988 48185988 1 + G T UCEC 48185985 + 48185965 48186005 41 ATCTCTCCCAGATGAGTGACCGAGGTGGGGGTGTTCCCTTG ATCTCTCCCAGATGAGTGACCGATGTGGGGGTGTTCCCTTG < 41bp 0.836418893851573 0.46803765887322 0.9256644 0.6105081 prediction 0.672837787703146 Functional Loss - PDK2 ENSG00000005882 CDS Human protein_coding chr17:48185985 chr17:48185988 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50709 0 0 1 0 2 PDK2 chr17:48186083 5'GT 48186083 Upstream 96bp
chr1 29189318 29189318 1 + G T UCEC 29189315 + 29189295 29189335 41 TGGTACTGGGACACGGTGACCAAGATCTGCGTGTTCCTCTT TGGTACTGGGACACGGTGACCAATATCTGCGTGTTCCTCTT < 41bp 0.848372570732663 0.511982935748825 0.5502392 0.12617815 prediction 0.672779269967675 Functional Loss - OPRD1 ENSG00000116329 CDS Human protein_coding chr1:29189315 chr1:29189318 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50711 0 0 0 0 1 OPRD1 chr1:29189254 3'AG 29189254 Downstream 65bp
chrX 65476001 65476001 1 + G T STAD 65475998 + 65475978 65476018 41 CTATCTGCCAAAAGGGCATCCTGGAGCCCCATGGAGGACGG CTATCTGCCAAAAGGGCATCCTGTAGCCCCATGGAGGACGG < 41bp 0.854886182354996 0.518549201093985 0.37380502 0.11067003 prediction 0.672673962522023 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65475998 chrX:65476001 stopgain 0.816 0 24 hm5C_associated_SNPs_50713 0 0 1 0 1 HEPH chrX:65475947 3'AG 65475947 Downstream 55bp
chr9 99220679 99220679 1 + G T UCEC 99220676 + 99220656 99220696 41 GGTAGGCCAGAAGCGGACTCCTAGAAGAGGGGAGCAGCAAG GGTAGGCCAGAAGCGGACTCCTATAAGAGGGGAGCAGCAAG < 41bp 0.853904159660917 0.517625511359729 0.4277261 0.8819549 prediction 0.672557296602375 Functional Loss - HABP4 ENSG00000130956 CDS Human protein_coding chr9:99220676 chr9:99220679 nonsynonymous SNV 0.937 2 24 hm5C_associated_SNPs_50715 0 0 1 0 1 HABP4 chr9:99220661 3'AG 99220661 Downstream 19bp
chr1 99771331 99771331 1 + G T LUAD 99771328 + 99771308 99771348 41 GGTCTCTGACAGACCTCAATCAAGATCCCAACCGACTTTTA GGTCTCTGACAGACCTCAATCAATATCCCAACCGACTTTTA < 41bp 0.836196133471636 0.493340068310957 0.39238724 0.06804201 prediction 0.672392266943272 Functional Loss - PLPPR4 ENSG00000117600 CDS Human protein_coding chr1:99771328 chr1:99771331 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_50718 0 0 0 0 1 PLPPR4 chr1:99771241 3'AG 99771241 Downstream 91bp
chr3 49212328 49212328 1 + A C COAD 49212324 + 49212304 49212344 41 TCTTTAGCCTGGGTGGCCTGCAGCAGCCTGGGCCCCACAAC TCTTTAGCCTGGGTGGCCTGCAGCCGCCTGGGCCCCACAAC < 41bp 0.873568787553392 0.537419876271069 0.68169016 0.36888784 prediction 0.672297822564646 Functional Loss - KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212324 chr3:49212328 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_50721 0 0 1 0 1 KLHDC8B chr3:49212399 5'GT 49212399 Upstream 72bp
chr19 50917049 50917049 1 + G T UCEC 50917046 + 50917026 50917066 41 ATGTGCCGATTCGGCGTGTCCTCGGTGGCTGAGGCGATGGC ATGTGCCGATTCGGCGTGTCCTCTGTGGCTGAGGCGATGGC < 41bp 0.857269992001771 0.52112533591578 0.12626705 0.03715691 prediction 0.672289312171981 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50917046 chr19:50917049 synonymous SNV . 0 24 hm5C_associated_SNPs_50722 0 0 1 0 2 POLD1 chr19:50916999 3'AG 50916999 Downstream 51bp
chr19 50917049 50917049 1 + G T UCEC 50917046 + 50917026 50917066 41 ATGTGCCGATTCGGCGTGTCCTCGGTGGCTGAGGCGATGGC ATGTGCCGATTCGGCGTGTCCTCTGTGGCTGAGGCGATGGC < 41bp 0.857269992001771 0.52112533591578 0.12626705 0.03715691 prediction 0.672289312171981 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50917046 chr19:50917049 synonymous SNV . 0 24 hm5C_associated_SNPs_50722 0 0 1 0 2 POLD1 chr19:50917136 5'GT 50917136 Upstream 88bp
chr11 124496881 124496881 1 + A C STAD 124496877 + 124496857 124496897 41 TGCAGTACTCGAATATATGCCAGCATGAAGTGCCCAGACCA TGCAGTACTCGAATATATGCCAGCCTGAAGTGCCCAGACCA < 41bp 0.836034763426682 0.455680853957471 0.14471576 0.14370143 prediction 0.672069526853364 Functional Loss - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124496877 chr11:124496881 nonsynonymous SNV 0.993 1 25 hm5C_associated_SNPs_50728 0 0 1 0 2 TBRG1 chr11:124496800 3'AG 124496800 Downstream 82bp
chr11 124496881 124496881 1 + A C STAD 124496877 + 124496857 124496897 41 TGCAGTACTCGAATATATGCCAGCATGAAGTGCCCAGACCA TGCAGTACTCGAATATATGCCAGCCTGAAGTGCCCAGACCA < 41bp 0.836034763426682 0.455680853957471 0.14471576 0.14370143 prediction 0.672069526853364 Functional Loss - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124496877 chr11:124496881 nonsynonymous SNV 0.993 1 25 hm5C_associated_SNPs_50728 0 0 1 0 2 TBRG1 chr11:124496946 5'GT 124496946 Upstream 66bp
chrX 10180620 10180620 1 + G T UCEC 10180617 + 10180597 10180637 41 CACCATGACTGGATCATCTTCAGGAACTGGTGCAGACCCGG CACCATGACTGGATCATCTTCAGTAACTGGTGCAGACCCGG < 41bp 0.864289669795182 0.528339107000492 0.8084446 0.377258 prediction 0.67190112558938 Functional Loss - CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10180617 chrX:10180620 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50732 0 0 0 0 1 CLCN4 chrX:10180693 5'GT 10180693 Upstream 74bp
chr7 107234462 107234462 1 + A C STAD 107234458 + 107234438 107234478 41 ACCATTGAGAAGAGCTCCACCAGCAGACCTGATGCCTATGA ACCATTGAGAAGAGCTCCACCAGCCGACCTGATGCCTATGA < 41bp 0.835907935776104 0.458893635832788 0.15058851 0.047798425 prediction 0.671815871552207 Functional Loss - BCAP29 ENSG00000075790 CDS Human protein_coding chr7:107234458 chr7:107234462 synonymous SNV . 0 25 hm5C_associated_SNPs_50735 0 0 1 0 2 BCAP29 chr7:107234400 3'AG 107234400 Downstream 63bp
chr7 107234462 107234462 1 + A C STAD 107234458 + 107234438 107234478 41 ACCATTGAGAAGAGCTCCACCAGCAGACCTGATGCCTATGA ACCATTGAGAAGAGCTCCACCAGCCGACCTGATGCCTATGA < 41bp 0.835907935776104 0.458893635832788 0.15058851 0.047798425 prediction 0.671815871552207 Functional Loss - BCAP29 ENSG00000075790 CDS Human protein_coding chr7:107234458 chr7:107234462 synonymous SNV . 0 25 hm5C_associated_SNPs_50735 0 0 1 0 2 BCAP29 chr7:107234550 5'GT 107234550 Upstream 89bp
chr3 129249822 129249822 1 + G T THCA 129249819 + 129249799 129249839 41 TTCGGGGAGAACCATGCCATCATGGGCGTTGCCTTCACCTG TTCGGGGAGAACCATGCCATCATTGGCGTTGCCTTCACCTG < 41bp 0.835763053091082 0.472710883380487 0.8911038 0.34463444 prediction 0.671526106182165 Functional Loss - RHO ENSG00000163914 CDS Human protein_coding chr3:129249819 chr3:129249822 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_50746 0 0 0 0 1 RHO chr3:129249887 5'GT 129249887 Upstream 66bp
chr14 52188726 52188726 1 + G T LUAD 52188723 + 52188703 52188743 41 AGCAGATGAATGAAGAGTCTCTGGAAGTCAGCCCAGACATG AGCAGATGAATGAAGAGTCTCTGTAAGTCAGCCCAGACATG < 41bp 0.843729426361762 0.507967670349346 0.30785885 0.12155312 prediction 0.671523512024831 Functional Loss - FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52188723 chr14:52188726 stopgain 0.922 1 24 hm5C_associated_SNPs_50747 0 0 1 0 2 FRMD6 chr14:52188667 3'AG 52188667 Downstream 60bp
chr14 52188726 52188726 1 + G T LUAD 52188723 + 52188703 52188743 41 AGCAGATGAATGAAGAGTCTCTGGAAGTCAGCCCAGACATG AGCAGATGAATGAAGAGTCTCTGTAAGTCAGCCCAGACATG < 41bp 0.843729426361762 0.507967670349346 0.30785885 0.12155312 prediction 0.671523512024831 Functional Loss - FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52188723 chr14:52188726 stopgain 0.922 1 24 hm5C_associated_SNPs_50747 0 0 1 0 2 FRMD6 chr14:52188798 5'GT 52188798 Upstream 73bp
chr10 29776135 29776135 1 + A C UCEC 29776131 + 29776111 29776151 41 TTTGCAAACTCTCCTACCCACAGGAAGCAGCAGTGGGGAGA TTTGCAAACTCTCCTACCCACAGGCAGCAGCAGTGGGGAGA < 41bp 0.849022731620662 0.513302497947342 0.40533426 0.22389406 prediction 0.671440467346639 Functional Loss - SVIL ENSG00000197321 CDS Human antisense chr10:29776131 chr10:29776135 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_50749 0 0 0 0 1 SVIL-AS1 chr10:29776084 3'AG 29776084 Downstream 52bp
chr15 101432806 101432806 1 + G T SKCM 101432803 + 101432783 101432823 41 TAGAACCCTCAGATACTTTGCAGGGTGGGCAGACAAAATCC TAGAACCCTCAGATACTTTGCAGTGTGGGCAGACAAAATCC < 41bp 0.835715727992585 0.475761913957587 0.88037694 0.25299975 prediction 0.671431455985169 Functional Loss - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101432803 chr15:101432806 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_50750 0 0 0 0 2 ALDH1A3 chr15:101432715 3'AG 101432715 Downstream 92bp
chr15 101432806 101432806 1 + G T SKCM 101432803 + 101432783 101432823 41 TAGAACCCTCAGATACTTTGCAGGGTGGGCAGACAAAATCC TAGAACCCTCAGATACTTTGCAGTGTGGGCAGACAAAATCC < 41bp 0.835715727992585 0.475761913957587 0.88037694 0.25299975 prediction 0.671431455985169 Functional Loss - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101432803 chr15:101432806 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_50750 0 0 0 0 2 ALDH1A3 chr15:101432844 5'GT 101432844 Upstream 39bp
chr1 210012334 210012334 1 + G T UCEC 210012331 + 210012311 210012351 41 AGCCTCCTCGAGGGTGACAGCAAGAAGAAAATCATTGTGAG AGCCTCCTCGAGGGTGACAGCAATAAGAAAATCATTGTGAG < 41bp 0.83569416726421 0.490432210103746 0.89977056 0.38906282 prediction 0.671388334528421 Functional Loss - DIEXF ENSG00000117597 CDS Human protein_coding chr1:210012331 chr1:210012334 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50752 0 0 1 0 1 DIEXF chr1:210012254 3'AG 210012254 Downstream 81bp
chr1 43162925 43162925 1 + A C PRAD 43162921 + 43162901 43162941 41 TATGTATCGGGGATATAGACCACGATTCCGCAGGTATGGTC TATGTATCGGGGATATAGACCACGCTTCCGCAGGTATGGTC < 41bp 0.835690880624281 0.471661338198106 0.0777643 0.10666254 prediction 0.671381761248562 Functional Loss - YBX1 ENSG00000065978 CDS Human protein_coding chr1:43162921 chr1:43162925 synonymous SNV 1.000 0 25 hm5C_associated_SNPs_50753 0 0 0 0 1 YBX1 chr1:43162933 5'GT 43162933 Upstream 9bp
chr14 103805095 103805095 1 + G T SARC 103805092 + 103805072 103805112 41 GAAGAAGAGGAGGATGATGACTGGGGAGAAGATACAACTGA GAAGAAGAGGAGGATGATGACTGTGGAGAAGATACAACTGA < 41bp 0.845349719976301 0.509707172479226 0.49817383 0.37431794 prediction 0.671285094994151 Functional Loss - EIF5 ENSG00000100664 CDS Human protein_coding chr14:103805092 chr14:103805095 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_50759 0 0 1 0 1 EIF5 chr14:103805072 3'AG 103805072 Downstream 24bp
chr8 11606502 11606502 1 + G T LUAD 11606499 + 11606479 11606519 41 TGTCCACCCCGCTCTGGAGGCGAGATGGGACGGGTCACTAT TGTCCACCCCGCTCTGGAGGCGATATGGGACGGGTCACTAT < 41bp 0.835592933996924 0.483189731159438 0.9162539 0.831288 prediction 0.671185867993848 Functional Loss - GATA4 ENSG00000136574 CDS Human protein_coding chr8:11606499 chr8:11606502 nonsynonymous SNV 0.900 5 24 hm5C_associated_SNPs_50761 0 0 1 0 3 GATA4 chr8:11606425 3'AG 11606425 Downstream 78bp
chr8 11606502 11606502 1 + G T LUAD 11606499 + 11606479 11606519 41 TGTCCACCCCGCTCTGGAGGCGAGATGGGACGGGTCACTAT TGTCCACCCCGCTCTGGAGGCGATATGGGACGGGTCACTAT < 41bp 0.835592933996924 0.483189731159438 0.9162539 0.831288 prediction 0.671185867993848 Functional Loss - GATA4 ENSG00000136574 CDS Human protein_coding chr8:11606499 chr8:11606502 nonsynonymous SNV 0.900 5 24 hm5C_associated_SNPs_50761 0 0 1 0 3 GATA4 chr8:11606428 3'AG 11606428 Downstream 75bp
chr8 11606502 11606502 1 + G T LUAD 11606499 + 11606479 11606519 41 TGTCCACCCCGCTCTGGAGGCGAGATGGGACGGGTCACTAT TGTCCACCCCGCTCTGGAGGCGATATGGGACGGGTCACTAT < 41bp 0.835592933996924 0.483189731159438 0.9162539 0.831288 prediction 0.671185867993848 Functional Loss - GATA4 ENSG00000136574 CDS Human protein_coding chr8:11606499 chr8:11606502 nonsynonymous SNV 0.900 5 24 hm5C_associated_SNPs_50761 0 0 1 0 3 GATA4 chr8:11606594 5'GT 11606594 Upstream 93bp
chr3 183882370 183882370 1 + G T LUSC 183882367 + 183882347 183882387 41 GCCCAGCGAGAGCGGCCACGCCGGAGGGATGGCCCAGAGCA GCCCAGCGAGAGCGGCCACGCCGTAGGGATGGCCCAGAGCA < 41bp 0.83555690139343 0.478221370452191 0.6379616 0.11868635 prediction 0.671113802786859 Functional Loss - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183882367 chr3:183882370 synonymous SNV . 0 24 hm5C_associated_SNPs_50764 0 0 1 0 1 DVL3 chr3:183882389 5'GT 183882389 Upstream 20bp
chr16 31424225 31424225 1 + G T LUSC 31424222 + 31424202 31424242 41 GGCAGGCGCTGAGTGGGGGTCAGGACCTCACCCAGGATGGA GGCAGGCGCTGAGTGGGGGTCAGTACCTCACCCAGGATGGA < 41bp 0.86548586166986 0.52994161239326 0.8599666 0.26786447 prediction 0.671088498553199 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31424222 chr16:31424225 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50765 0 0 0 0 2 ITGAD chr16:31424159 3'AG 31424159 Downstream 67bp
chr16 31424225 31424225 1 + G T LUSC 31424222 + 31424202 31424242 41 GGCAGGCGCTGAGTGGGGGTCAGGACCTCACCCAGGATGGA GGCAGGCGCTGAGTGGGGGTCAGTACCTCACCCAGGATGGA < 41bp 0.86548586166986 0.52994161239326 0.8599666 0.26786447 prediction 0.671088498553199 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31424222 chr16:31424225 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50765 0 0 0 0 2 ITGAD chr16:31424289 5'GT 31424289 Upstream 65bp
chr3 17053602 17053602 1 + A C UCEC 17053598 + 17053578 17053618 41 AAAACCGTGGATGAGGTATTCAAGAATGCCCAGCCCCCTAT AAAACCGTGGATGAGGTATTCAAGCATGCCCAGCCCCCTAT < 41bp 0.835493743023977 0.481489672256212 0.8204868 0.5061202 prediction 0.670987486047953 Functional Loss - PLCL2 ENSG00000154822 CDS Human protein_coding chr3:17053598 chr3:17053602 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_50769 0 0 1 0 1 PLCL2 chr3:17053652 5'GT 17053652 Upstream 51bp
chr11 13716346 13716346 1 + A C READ 13716342 + 13716322 13716362 41 ATCCCAGAATACTATGAAGGCAAGAACGTCCTCCTCACAGG ATCCCAGAATACTATGAAGGCAAGCACGTCCTCCTCACAGG < 41bp 0.835484357985237 0.484634938470828 0.19295785 0.13537964 prediction 0.670968715970473 Functional Loss - FAR1 ENSG00000197601 CDS Human protein_coding chr11:13716342 chr11:13716346 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_50771 0 0 1 0 1 FAR1 chr11:13716306 3'AG 13716306 Downstream 41bp
chr1 11204802 11204802 1 + G T UCEC 11204799 + 11204779 11204819 41 CCAGCTCGGACAGCATGTGGCAAGAAACCATGGCCTGATGG CCAGCTCGGACAGCATGTGGCAATAAACCATGGCCTGATGG < 41bp 0.835461957740001 0.496519853254241 0.14623654 0.07053068 prediction 0.670923915480003 Functional Loss - MTOR ENSG00000198793 CDS Human protein_coding chr1:11204799 chr1:11204802 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_50772 0 0 0 0 1 MTOR chr1:11204724 3'AG 11204724 Downstream 79bp
chr2 241533429 241533429 1 + G T HNSC 241533426 + 241533406 241533446 41 CTGCTGCGGATCCAGAACCCCTGGGGCCGGCGGTGCTGGCA CTGCTGCGGATCCAGAACCCCTGTGGCCGGCGGTGCTGGCA < 41bp 0.84060680015961 0.505149060776066 0.86389923 0.32148582 prediction 0.670915478767088 Functional Loss - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241533426 chr2:241533429 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50773 0 0 0 0 1 CAPN10 chr2:241533464 5'GT 241533464 Upstream 36bp
chr20 20079339 20079339 1 + G T LUAD 20079336 + 20079316 20079356 41 TGGGTTCATGAGTGTGTGCTCAAGAGTGAACATGCAACTGC TGGGTTCATGAGTGTGTGCTCAATAGTGAACATGCAACTGC < 41bp 0.835433252013325 0.492641881708288 0.8150157 0.19655651 prediction 0.670866504026649 Functional Loss - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20079336 chr20:20079339 nonsynonymous SNV 0.914 0 24 hm5C_associated_SNPs_50776 0 0 0 0 1 CFAP61 chr20:20079299 3'AG 20079299 Downstream 41bp
chr11 118184528 118184528 1 + G T THYM 118184525 + 118184505 118184545 41 CTGCTGGTTTACTACTGGAGCAAGAATAGAAAGGCCAAGGC CTGCTGGTTTACTACTGGAGCAATAATAGAAAGGCCAAGGC < 41bp 0.835391029544384 0.476067425549364 0.26449573 0.33253264 prediction 0.670782059088768 Functional Loss - CD3E ENSG00000198851 CDS Human protein_coding chr11:118184525 chr11:118184528 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_50778 0 0 0 0 1 CD3E chr11:118184589 5'GT 118184589 Upstream 62bp
chr16 89702774 89702774 1 + G T UCEC 89702771 + 89702751 89702791 41 ACCGCATGTGCCGGATGTACCCGGAGACCTTCCTGTATGTC ACCGCATGTGCCGGATGTACCCGTAGACCTTCCTGTATGTC < 41bp 0.835369309448564 0.47173117922371 0.88558376 0.091828495 prediction 0.670738618897128 Functional Loss - DPEP1 ENSG00000015413 CDS Human protein_coding chr16:89702771 chr16:89702774 stopgain 0.109 1 24 hm5C_associated_SNPs_50779 0 0 0 0 1 DPEP1 chr16:89702804 5'GT 89702804 Upstream 31bp
chr19 56382275 56382275 1 + G T LUAD 56382272 + 56382252 56382292 41 GTAACAAGAGCGTGCGCTATCTAGACCTCAGTGCCAATGTC GTAACAAGAGCGTGCGCTATCTATACCTCAGTGCCAATGTC < 41bp 0.852012243935171 0.516667978088248 0.12757218 0.042970836 prediction 0.670688531693846 Functional Loss - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56382272 chr19:56382275 nonsynonymous SNV 0.002 3 24 hm5C_associated_SNPs_50781 0 0 0 0 2 NLRP4 chr19:56382193 3'AG 56382193 Downstream 83bp
chr19 56382275 56382275 1 + G T LUAD 56382272 + 56382252 56382292 41 GTAACAAGAGCGTGCGCTATCTAGACCTCAGTGCCAATGTC GTAACAAGAGCGTGCGCTATCTATACCTCAGTGCCAATGTC < 41bp 0.852012243935171 0.516667978088248 0.12757218 0.042970836 prediction 0.670688531693846 Functional Loss - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56382272 chr19:56382275 nonsynonymous SNV 0.002 3 24 hm5C_associated_SNPs_50781 0 0 0 0 2 NLRP4 chr19:56382363 5'GT 56382363 Upstream 89bp
chr22 24122848 24122848 1 + G T KIRC 24122845 + 24122825 24122865 41 CCTTCTTCCCCAAGACTCACCGAGAAGGGGATGTCCACTTC CCTTCTTCCCCAAGACTCACCGATAAGGGGATGTCCACTTC < 41bp 0.860271243014453 0.524952982095737 0.08587468 0.0059559047 prediction 0.670636521837432 Functional Loss - MMP11 ENSG00000099953 CDS Human protein_coding chr22:24122845 chr22:24122848 stopgain 1.000 1 24 hm5C_associated_SNPs_50782 0 0 0 0 1 MMP11 chr22:24122769 3'AG 24122769 Downstream 80bp
chr10 94828094 94828094 1 + G T UCEC 94828091 + 94828071 94828111 41 CTGCAGGGCTACCAGATCCCCAAGGGCTGGAGCGTGATGTA CTGCAGGGCTACCAGATCCCCAATGGCTGGAGCGTGATGTA < 41bp 0.835264895515249 0.479846834570626 0.90310454 0.23997128 prediction 0.670529791030498 Functional Loss - CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94828091 chr10:94828094 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_50783 0 0 0 0 1 CYP26C1 chr10:94828077 3'AG 94828077 Downstream 18bp
chr19 7671380 7671380 1 + G T CESC 7671377 + 7671357 7671397 41 TCCAGACCGTCCGGCGGCTGCAGGAGAAGACCGAGCAGGAA TCCAGACCGTCCGGCGGCTGCAGTAGAAGACCGAGCAGGAA < 41bp 0.835262684771292 0.492245633939416 0.92726 0.88924646 prediction 0.670525369542584 Functional Loss - CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7671377 chr19:7671380 stopgain 0.997 0 24 hm5C_associated_SNPs_50784 0 0 1 0 2 CAMSAP3 chr19:7671362 3'AG 7671362 Downstream 19bp
chr19 7671380 7671380 1 + G T CESC 7671377 + 7671357 7671397 41 TCCAGACCGTCCGGCGGCTGCAGGAGAAGACCGAGCAGGAA TCCAGACCGTCCGGCGGCTGCAGTAGAAGACCGAGCAGGAA < 41bp 0.835262684771292 0.492245633939416 0.92726 0.88924646 prediction 0.670525369542584 Functional Loss - CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7671377 chr19:7671380 stopgain 0.997 0 24 hm5C_associated_SNPs_50784 0 0 1 0 2 CAMSAP3 chr19:7671457 5'GT 7671457 Upstream 78bp
chr12 126128738 126128738 1 + G T HNSC 126128735 + 126128715 126128755 41 TCCCAGTTCGAGGTCACTGTCTGGGCACCCAGGCTCCCCCT TCCCAGTTCGAGGTCACTGTCTGTGCACCCAGGCTCCCCCT < 41bp 0.853501799481191 0.518239523987381 0.93635404 0.2179555 prediction 0.670524550987619 Functional Loss - TMEM132B ENSG00000139364 CDS Human protein_coding chr12:126128735 chr12:126128738 nonsynonymous SNV 0.815 4 24 hm5C_associated_SNPs_50785 0 0 0 0 1 TMEM132B chr12:126128827 5'GT 126128827 Upstream 90bp
chr10 134464009 134464009 1 + G T HNSC 134464006 + 134463986 134464026 41 TACAAATCCCAGGAGCACTTCACGGTGAGTCCCTCCCGCTG TACAAATCCCAGGAGCACTTCACTGTGAGTCCCTCCCGCTG < 41bp 0.835171456116966 0.47771002762997 0.8939591 0.3220189 prediction 0.670342912233931 Functional Loss - INPP5A ENSG00000068383 CDS Human protein_coding chr10:134464006 chr10:134464009 synonymous SNV . 0 24 hm5C_associated_SNPs_50788 0 0 1 0 2 INPP5A chr10:134463922 3'AG 134463922 Downstream 88bp
chr10 134464009 134464009 1 + G T HNSC 134464006 + 134463986 134464026 41 TACAAATCCCAGGAGCACTTCACGGTGAGTCCCTCCCGCTG TACAAATCCCAGGAGCACTTCACTGTGAGTCCCTCCCGCTG < 41bp 0.835171456116966 0.47771002762997 0.8939591 0.3220189 prediction 0.670342912233931 Functional Loss - INPP5A ENSG00000068383 CDS Human protein_coding chr10:134464006 chr10:134464009 synonymous SNV . 0 24 hm5C_associated_SNPs_50788 0 0 1 0 2 INPP5A chr10:134464009 5'GT 134464009 Upstream 1bp
chr1 244538733 244538733 1 + G T UCEC 244538730 + 244538710 244538750 41 CTATTACCCTGGGCAGCTGGCAAGACTCCATTTTGATCATA CTATTACCCTGGGCAGCTGGCAATACTCCATTTTGATCATA < 41bp 0.851632314403619 0.516523170118856 0.10156378 0.02998209 prediction 0.670218288569526 Functional Loss - C1orf100 ENSG00000173728 CDS Human protein_coding chr1:244538730 chr1:244538733 nonsynonymous SNV 0.939 4 24 hm5C_associated_SNPs_50789 0 0 1 0 2 C1orf100 chr1:244538674 3'AG 244538674 Downstream 60bp
chr1 244538733 244538733 1 + G T UCEC 244538730 + 244538710 244538750 41 CTATTACCCTGGGCAGCTGGCAAGACTCCATTTTGATCATA CTATTACCCTGGGCAGCTGGCAATACTCCATTTTGATCATA < 41bp 0.851632314403619 0.516523170118856 0.10156378 0.02998209 prediction 0.670218288569526 Functional Loss - C1orf100 ENSG00000173728 CDS Human protein_coding chr1:244538730 chr1:244538733 nonsynonymous SNV 0.939 4 24 hm5C_associated_SNPs_50789 0 0 1 0 2 C1orf100 chr1:244538769 5'GT 244538769 Upstream 37bp
chr4 69972945 69972945 1 + G T LUAD 69972942 + 69972922 69972962 41 AGATACCTTAGGTCTCAATACTCGGCTCTACAAGTGGATAC AGATACCTTAGGTCTCAATACTCTGCTCTACAAGTGGATAC < 41bp 0.836443985100436 0.501335323126055 0.46942776 0.13924822 prediction 0.670217323948762 Functional Loss - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69972942 chr4:69972945 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_50790 0 0 0 0 2 UGT2B7 chr4:69972893 3'AG 69972893 Downstream 53bp
chr4 69972945 69972945 1 + G T LUAD 69972942 + 69972922 69972962 41 AGATACCTTAGGTCTCAATACTCGGCTCTACAAGTGGATAC AGATACCTTAGGTCTCAATACTCTGCTCTACAAGTGGATAC < 41bp 0.836443985100436 0.501335323126055 0.46942776 0.13924822 prediction 0.670217323948762 Functional Loss - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69972942 chr4:69972945 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_50790 0 0 0 0 2 UGT2B7 chr4:69972980 5'GT 69972980 Upstream 36bp
chrX 153049813 153049813 1 + G T UCEC 153049810 + 153049790 153049830 41 CCCCAAAATGCAGATAAGATCAAGATCAAGATCGCAGACCT CCCCAAAATGCAGATAAGATCAATATCAAGATCGCAGACCT < 41bp 0.85992015798307 0.52481285224681 0.39235216 0.06897262 prediction 0.670214611472521 Functional Loss - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153049810 chrX:153049813 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_50791 0 0 0 0 2 SRPK3 chrX:153049749 3'AG 153049749 Downstream 65bp
chrX 153049813 153049813 1 + G T UCEC 153049810 + 153049790 153049830 41 CCCCAAAATGCAGATAAGATCAAGATCAAGATCGCAGACCT CCCCAAAATGCAGATAAGATCAATATCAAGATCGCAGACCT < 41bp 0.85992015798307 0.52481285224681 0.39235216 0.06897262 prediction 0.670214611472521 Functional Loss - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153049810 chrX:153049813 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_50791 0 0 0 0 2 SRPK3 chrX:153049849 5'GT 153049849 Upstream 37bp
chr3 38158718 38158718 1 + G T BLCA 38158715 + 38158695 38158735 41 GTAGGTGGAAAGGGAGATTCCAGGGAAGAGGCATCGCCTGC GTAGGTGGAAAGGGAGATTCCAGTGAAGAGGCATCGCCTGC < 41bp 0.856787872942814 0.521772326123822 0.89979446 0.7702892 prediction 0.670031093637985 Functional Loss - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38158715 chr3:38158718 nonsynonymous SNV 0.244 4 24 hm5C_associated_SNPs_50795 0 0 0 0 3 DLEC1 chr3:38158696 3'AG 38158696 Downstream 23bp
chr3 38158718 38158718 1 + G T BLCA 38158715 + 38158695 38158735 41 GTAGGTGGAAAGGGAGATTCCAGGGAAGAGGCATCGCCTGC GTAGGTGGAAAGGGAGATTCCAGTGAAGAGGCATCGCCTGC < 41bp 0.856787872942814 0.521772326123822 0.89979446 0.7702892 prediction 0.670031093637985 Functional Loss - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38158715 chr3:38158718 nonsynonymous SNV 0.244 4 24 hm5C_associated_SNPs_50795 0 0 0 0 3 DLEC1 chr3:38158699 3'AG 38158699 Downstream 20bp
chr3 38158718 38158718 1 + G T BLCA 38158715 + 38158695 38158735 41 GTAGGTGGAAAGGGAGATTCCAGGGAAGAGGCATCGCCTGC GTAGGTGGAAAGGGAGATTCCAGTGAAGAGGCATCGCCTGC < 41bp 0.856787872942814 0.521772326123822 0.89979446 0.7702892 prediction 0.670031093637985 Functional Loss - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38158715 chr3:38158718 nonsynonymous SNV 0.244 4 24 hm5C_associated_SNPs_50795 0 0 0 0 3 DLEC1 chr3:38158793 5'GT 38158793 Upstream 76bp
chr19 17638144 17638144 1 + A C rs200304763 17638140 + 17638120 17638160 41 GGAAGAGGAGCCCCGGGAGACGACAGCAGCATGGGTGGGCG GGAAGAGGAGCCCCGGGAGACGACCGCAGCATGGGTGGGCG < 41bp 0.844437422139904 0.50943150902609 0.49911183 0.55649114 prediction 0.670011826227628 Functional Loss - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17638140 chr19:17638144 nonsynonymous SNV 0.023 1 25 hm5C_associated_SNPs_50797 0 0 0 0 1 FAM129C chr19:17638204 5'GT 17638204 Upstream 61bp
chr12 58109591 58109591 1 + G T LUAD 58109588 + 58109568 58109608 41 TCTCTGGGGACTACATCGATCGCGTGGACGAGCCCTTGTCC TCTCTGGGGACTACATCGATCGCTTGGACGAGCCCTTGTCC < 41bp 0.851590321068124 0.516603822011492 0.566393 0.11195922 prediction 0.669972998113264 Functional Loss - OS9 ENSG00000135506 CDS Human protein_coding chr12:58109588 chr12:58109591 nonsynonymous SNV 0.577 3 24 hm5C_associated_SNPs_50798 0 0 1 0 1 OS9 chr12:58109543 3'AG 58109543 Downstream 49bp
chr17 62080248 62080248 1 - C A rs141394372 62080251 - 62080231 62080271 41 AGCCAGATGGTCATCATAGTCACGGTGGTGTCGGTGTTGCT AGCCAGATGGTCATCATAGTCACTGTGGTGTCGGTGTTGCT < 41bp 0.855415409196076 0.520541796895267 0.90966636 0.5044398 prediction 0.669747224601619 Functional Loss - ICAM2 ENSG00000108622 CDS Human protein_coding chr17:62080251 chr17:62080248 synonymous SNV . 0 24 hm5C_associated_SNPs_50805 0 0 1 0 1 ICAM2 chr17:62080285 3'AG 62080285 Downstream 38bp
chr5 33467732 33467732 1 + G T LUAD 33467729 + 33467709 33467749 41 ACAAGAGACAATAAGGTCCACGGGGAACGCACCATTTCTGA ACAAGAGACAATAAGGTCCACGGTGAACGCACCATTTCTGA < 41bp 0.847264101002476 0.512410255394836 0.45391285 0.076075256 prediction 0.66970769121528 Functional Loss - TARS ENSG00000113407 CDS Human protein_coding chr5:33467729 chr5:33467732 synonymous SNV . 0 24 hm5C_associated_SNPs_50808 0 0 1 0 1 TARS chr5:33467665 3'AG 33467665 Downstream 68bp
chr19 35836618 35836618 1 + A C SKCM 35836614 + 35836594 35836634 41 CTTTCCCGAGATGAACATACCACGAACTGGGTACTGAGGGT CTTTCCCGAGATGAACATACCACGCACTGGGTACTGAGGGT < 41bp 0.834831560035954 0.463006754420167 0.35495752 0.21903044 prediction 0.669663120071909 Functional Loss - CD22 ENSG00000012124 CDS Human protein_coding chr19:35836614 chr19:35836618 synonymous SNV . 0 25 hm5C_associated_SNPs_50809 0 0 0 0 1 CD22 chr19:35836623 5'GT 35836623 Upstream 6bp
chr19 50964954 50964954 1 + G T UCEC 50964951 + 50964931 50964971 41 AAGAACACGGCCCGCATCCTCAAGACAGGTACAGCCATCCT AAGAACACGGCCCGCATCCTCAATACAGGTACAGCCATCCT < 41bp 0.856752273330607 0.521924950922528 0.41813603 0.17394301 prediction 0.669654644816158 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50964951 chr19:50964954 nonsynonymous SNV 0.984 3 24 hm5C_associated_SNPs_50810 0 0 0 0 1 MYBPC2 chr19:50964958 5'GT 50964958 Upstream 5bp
chr19 55175009 55175009 1 + G T rs11540761 55175006 + 55174986 55175026 41 CCAGGGCTGAGTCTGGGCCCCAGGACCCACATGCAGGCAGG CCAGGGCTGAGTCTGGGCCCCAGTACCCACATGCAGGCAGG < 41bp 0.834823700374731 0.475755721213957 0.73591626 0.31830156 prediction 0.669647400749462 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55175006 chr19:55175009 nonsynonymous SNV 0.037 2 24 hm5C_associated_SNPs_50811 0 0 0 0 2 LILRB4 chr19:55174990 3'AG 55174990 Downstream 20bp
chr19 55175009 55175009 1 + G T rs11540761 55175006 + 55174986 55175026 41 CCAGGGCTGAGTCTGGGCCCCAGGACCCACATGCAGGCAGG CCAGGGCTGAGTCTGGGCCCCAGTACCCACATGCAGGCAGG < 41bp 0.834823700374731 0.475755721213957 0.73591626 0.31830156 prediction 0.669647400749462 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55175006 chr19:55175009 nonsynonymous SNV 0.037 2 24 hm5C_associated_SNPs_50811 0 0 0 0 2 LILRB4 chr19:55175025 5'GT 55175025 Upstream 17bp
chrX 155232673 155232673 1 + G T LUAD 155232670 + 155232650 155232690 41 CTGCTTGGGAGTCTCTGTCACAGGGGAAGGACAAGGTGAGG CTGCTTGGGAGTCTCTGTCACAGTGGAAGGACAAGGTGAGG < 41bp 0.83481112821731 0.46962973932995 0.91420674 0.839586 prediction 0.66962225643462 Functional Loss - IL9R ENSG00000124334 CDS Human protein_coding chrX:155232670 chrX:155232673 nonsynonymous SNV 0.007 2 24 hm5C_associated_SNPs_50813 0 0 0 0 1 IL9R chrX:155232684 5'GT 155232684 Upstream 12bp
chr6 44116019 44116019 1 + G T LUAD 44116016 + 44115996 44116036 41 CCATTGAGTACTACACAAAGCTGGAGCAGAAGCTGAAGGAA CCATTGAGTACTACACAAAGCTGTAGCAGAAGCTGAAGGAA < 41bp 0.83478512794133 0.481298322616799 0.17159286 0.098430365 prediction 0.66957025588266 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116016 chr6:44116019 stopgain 1.000 1 24 hm5C_associated_SNPs_50815 0 0 1 0 1 TMEM63B chr6:44115989 3'AG 44115989 Downstream 31bp
chr11 118960758 118960758 1 + G T UCEC 118960755 + 118960735 118960775 41 CAAAATTTGTTGGGAAGACCCTAGAAACCCTGCCAGAGAAG CAAAATTTGTTGGGAAGACCCTATAAACCCTGCCAGAGAAG < 41bp 0.85200056657635 0.517218354834584 0.34894615 0.49109805 prediction 0.669564423483533 Functional Loss - HMBS ENSG00000256269 CDS Human protein_coding chr11:118960755 chr11:118960758 stopgain 0.999 0 24 hm5C_associated_SNPs_50816 0 0 1 0 2 HMBS chr11:118960700 3'AG 118960700 Downstream 59bp
chr11 118960758 118960758 1 + G T UCEC 118960755 + 118960735 118960775 41 CAAAATTTGTTGGGAAGACCCTAGAAACCCTGCCAGAGAAG CAAAATTTGTTGGGAAGACCCTATAAACCCTGCCAGAGAAG < 41bp 0.85200056657635 0.517218354834584 0.34894615 0.49109805 prediction 0.669564423483533 Functional Loss - HMBS ENSG00000256269 CDS Human protein_coding chr11:118960755 chr11:118960758 stopgain 0.999 0 24 hm5C_associated_SNPs_50816 0 0 1 0 2 HMBS chr11:118960777 5'GT 118960777 Upstream 20bp
chr4 37850231 37850231 1 + G T UCEC 37850228 + 37850208 37850248 41 TTGGCTAGCTTCCTAGCAACCAAGAATTTGTCTTTGTCTCA TTGGCTAGCTTCCTAGCAACCAATAATTTGTCTTTGTCTCA < 41bp 0.835929887391156 0.501150308954664 0.77089214 0.28497142 prediction 0.669559156872985 Functional Loss - PGM2 ENSG00000169299 CDS Human protein_coding chr4:37850228 chr4:37850231 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_50818 0 0 0 0 2 PGM2 chr4:37850143 3'AG 37850143 Downstream 89bp
chr4 37850231 37850231 1 + G T UCEC 37850228 + 37850208 37850248 41 TTGGCTAGCTTCCTAGCAACCAAGAATTTGTCTTTGTCTCA TTGGCTAGCTTCCTAGCAACCAATAATTTGTCTTTGTCTCA < 41bp 0.835929887391156 0.501150308954664 0.77089214 0.28497142 prediction 0.669559156872985 Functional Loss - PGM2 ENSG00000169299 CDS Human protein_coding chr4:37850228 chr4:37850231 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_50818 0 0 0 0 2 PGM2 chr4:37850272 5'GT 37850272 Upstream 42bp
chr7 141765163 141765163 1 + G T COAD 141765160 + 141765140 141765180 41 TGCAGGAGGTGACGGGACAGCGAGGGGTCGTCATCACCCGC TGCAGGAGGTGACGGGACAGCGATGGGTCGTCATCACCCGC < 41bp 0.834752307114899 0.483902440389965 0.93593943 0.29543024 prediction 0.669504614229799 Functional Loss - MGAM ENSG00000257335 CDS Human protein_coding chr7:141765160 chr7:141765163 nonsynonymous SNV 0.799 4 24 hm5C_associated_SNPs_50820 0 0 0 0 1 MGAM chr7:141765135 3'AG 141765135 Downstream 29bp
chr3 184295195 184295195 1 + G T BLCA 184295192 + 184295172 184295212 41 GGCAGCAGCCTCACCCTATCCTGGGCACCCCCAGAGCGGCC GGCAGCAGCCTCACCCTATCCTGTGCACCCCCAGAGCGGCC < 41bp 0.863687607018042 0.528939290069799 0.6706873 0.16242936 prediction 0.669496633896487 Functional Loss - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184295192 chr3:184295195 nonsynonymous SNV 0.981 5 24 hm5C_associated_SNPs_50822 0 0 0 0 2 EPHB3 chr3:184295131 3'AG 184295131 Downstream 65bp
chr3 184295195 184295195 1 + G T BLCA 184295192 + 184295172 184295212 41 GGCAGCAGCCTCACCCTATCCTGGGCACCCCCAGAGCGGCC GGCAGCAGCCTCACCCTATCCTGTGCACCCCCAGAGCGGCC < 41bp 0.863687607018042 0.528939290069799 0.6706873 0.16242936 prediction 0.669496633896487 Functional Loss - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184295192 chr3:184295195 nonsynonymous SNV 0.981 5 24 hm5C_associated_SNPs_50822 0 0 0 0 2 EPHB3 chr3:184295255 5'GT 184295255 Upstream 61bp
chr12 3649914 3649914 1 + G T UCEC 3649911 + 3649891 3649931 41 GAACCCAGAGGAGATGACCTCGAGAGATTATTACTTCGACT GAACCCAGAGGAGATGACCTCGATAGATTATTACTTCGACT < 41bp 0.834607430413184 0.485497709347507 0.9114224 0.26781586 prediction 0.669214860826368 Functional Loss - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3649911 chr12:3649914 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50826 0 0 0 1 1 PRMT8 chr12:3649957 5'GT 3649957 Upstream 44bp
chr16 89289664 89289664 1 + G T UCEC 89289661 + 89289641 89289681 41 ACCTCTACAGAGATGTGATGCTGGAAAACTACGAGAACCTG ACCTCTACAGAGATGTGATGCTGTAAAACTACGAGAACCTG < 41bp 0.840018421163661 0.505445988967353 0.53585076 0.380145 prediction 0.669144864392618 Functional Loss - ZNF778 ENSG00000170100 CDS Human protein_coding chr16:89289661 chr16:89289664 stopgain 0.262 0 24 hm5C_associated_SNPs_50829 0 0 1 0 2 ZNF778 chr16:89289565 3'AG 89289565 Downstream 100bp
chr16 89289664 89289664 1 + G T UCEC 89289661 + 89289641 89289681 41 ACCTCTACAGAGATGTGATGCTGGAAAACTACGAGAACCTG ACCTCTACAGAGATGTGATGCTGTAAAACTACGAGAACCTG < 41bp 0.840018421163661 0.505445988967353 0.53585076 0.380145 prediction 0.669144864392618 Functional Loss - ZNF778 ENSG00000170100 CDS Human protein_coding chr16:89289661 chr16:89289664 stopgain 0.262 0 24 hm5C_associated_SNPs_50829 0 0 1 0 2 ZNF778 chr16:89289691 5'GT 89289691 Upstream 28bp
chr12 54379778 54379778 1 + G T LUAD 54379775 + 54379755 54379795 41 GCCGACTCCAGCCCAGACACCTCGGATAACGAAGCGAAAGG GCCGACTCCAGCCCAGACACCTCTGATAACGAAGCGAAAGG < 41bp 0.834529246255741 0.491912612733521 0.3420972 0.091510534 prediction 0.669058492511481 Functional Loss - HOXC10 ENSG00000180818;ENSG00000273049 CDS Human other chr12:54379775 chr12:54379778 synonymous SNV . 0 24 hm5C_associated_SNPs_50830 0 0 1 0 1 HOXC10 chr12:54379794 5'GT 54379794 Upstream 17bp
chr5 74655898 74655898 1 + G T LUAD 74655895 + 74655875 74655915 41 TGTGTGTGGGACCGTAATGGCTGGGGAATTGTCACTTATGG TGTGTGTGGGACCGTAATGGCTGTGGAATTGTCACTTATGG < 41bp 0.852084560299738 0.517557248260079 0.34742588 0.059886575 prediction 0.669054624079317 Functional Loss - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74655895 chr5:74655898 nonsynonymous SNV 0.954 4 24 hm5C_associated_SNPs_50831 0 0 1 0 2 HMGCR chr5:74655810 3'AG 74655810 Downstream 89bp
chr5 74655898 74655898 1 + G T LUAD 74655895 + 74655875 74655915 41 TGTGTGTGGGACCGTAATGGCTGGGGAATTGTCACTTATGG TGTGTGTGGGACCGTAATGGCTGTGGAATTGTCACTTATGG < 41bp 0.852084560299738 0.517557248260079 0.34742588 0.059886575 prediction 0.669054624079317 Functional Loss - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74655895 chr5:74655898 nonsynonymous SNV 0.954 4 24 hm5C_associated_SNPs_50831 0 0 1 0 2 HMGCR chr5:74655964 5'GT 74655964 Upstream 67bp
chrX 152083700 152083700 1 + G T LUAD 152083697 + 152083677 152083717 41 CCCAGAGAGCTGCCCTCAGGCCGGAGTCGCGCCACATCCTT CCCAGAGAGCTGCCCTCAGGCCGTAGTCGCGCCACATCCTT < 41bp 0.857549202639565 0.523031106585185 0.1709466 0.016597837 prediction 0.66903619210876 Functional Loss - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152083697 chrX:152083700 synonymous SNV . 0 24 hm5C_associated_SNPs_50832 0 0 0 0 2 ZNF185 chrX:152083682 3'AG 152083682 Downstream 19bp
chrX 152083700 152083700 1 + G T LUAD 152083697 + 152083677 152083717 41 CCCAGAGAGCTGCCCTCAGGCCGGAGTCGCGCCACATCCTT CCCAGAGAGCTGCCCTCAGGCCGTAGTCGCGCCACATCCTT < 41bp 0.857549202639565 0.523031106585185 0.1709466 0.016597837 prediction 0.66903619210876 Functional Loss - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152083697 chrX:152083700 synonymous SNV . 0 24 hm5C_associated_SNPs_50832 0 0 0 0 2 ZNF185 chrX:152083747 5'GT 152083747 Upstream 48bp
chr20 36975018 36975018 1 + G T LUSC 36975015 + 36974995 36975035 41 GCCAACCCCGGCTTGGTCGCCAGGATCACCGACAAGGGACT GCCAACCCCGGCTTGGTCGCCAGTATCACCGACAAGGGACT < 41bp 0.854509461393178 0.519992322633862 0.86077267 0.12338236 prediction 0.669034277518631 Functional Loss - LBP ENSG00000129988 CDS Human protein_coding chr20:36975015 chr20:36975018 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_50833 0 0 0 0 1 LBP chr20:36975043 5'GT 36975043 Upstream 26bp
chr5 2752838 2752838 1 + G T LUAD 2752835 + 2752815 2752855 41 GTCGAGAACGGGCAGGAGCTCAGGTTGGCGCCGCCGGTGCA GTCGAGAACGGGCAGGAGCTCAGTTTGGCGCCGCCGGTGCA < 41bp 0.834514821499551 0.48605781734972 0.9102709 0.70857316 prediction 0.669029642999101 Functional Loss - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2752835 chr5:2752838 nonsynonymous SNV 0.006 1 24 hm5C_associated_SNPs_50834 0 0 0 0 2 C5orf38 chr5:2752794 3'AG 2752794 Downstream 45bp
chr5 2752838 2752838 1 + G T LUAD 2752835 + 2752815 2752855 41 GTCGAGAACGGGCAGGAGCTCAGGTTGGCGCCGCCGGTGCA GTCGAGAACGGGCAGGAGCTCAGTTTGGCGCCGCCGGTGCA < 41bp 0.834514821499551 0.48605781734972 0.9102709 0.70857316 prediction 0.669029642999101 Functional Loss - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2752835 chr5:2752838 nonsynonymous SNV 0.006 1 24 hm5C_associated_SNPs_50834 0 0 0 0 2 C5orf38 chr5:2752868 5'GT 2752868 Upstream 31bp
chrX 70764444 70764444 1 + G T THCA 70764441 + 70764421 70764461 41 TGTACTGTGTTCGCAGTGACCTGGGGAACCTGCTCAAAGCC TGTACTGTGTTCGCAGTGACCTGTGGAACCTGCTCAAAGCC < 41bp 0.851397920085751 0.516923331592832 0.85745406 0.18432203 prediction 0.668949176985838 Functional Loss - OGT ENSG00000147162 CDS Human protein_coding chrX:70764441 chrX:70764444 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50836 0 0 1 0 2 OGT chrX:70764417 3'AG 70764417 Downstream 28bp
chrX 70764444 70764444 1 + G T THCA 70764441 + 70764421 70764461 41 TGTACTGTGTTCGCAGTGACCTGGGGAACCTGCTCAAAGCC TGTACTGTGTTCGCAGTGACCTGTGGAACCTGCTCAAAGCC < 41bp 0.851397920085751 0.516923331592832 0.85745406 0.18432203 prediction 0.668949176985838 Functional Loss - OGT ENSG00000147162 CDS Human protein_coding chrX:70764441 chrX:70764444 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50836 0 0 1 0 2 OGT chrX:70764485 5'GT 70764485 Upstream 42bp
chr12 66717817 66717817 1 + G T BRCA 66717814 + 66717794 66717834 41 GGTGATAAAATTTGTTGTACCAGGAATGCATACCTCTCAGA GGTGATAAAATTTGTTGTACCAGTAATGCATACCTCTCAGA < 41bp 0.845033498739883 0.510590826319805 0.7744176 0.09256759 prediction 0.668885344840155 Functional Loss - HELB ENSG00000127311 CDS Human protein_coding chr12:66717814 chr12:66717817 nonsynonymous SNV 0.961 1 24 hm5C_associated_SNPs_50837 0 0 1 2 1 HELB chr12:66717763 3'AG 66717763 Downstream 55bp
chr11 71548508 71548508 1 + A C UCEC 71548504 + 71548484 71548524 41 GCTCCTGTCGGGACTTTTGCCTTGAAACAGAAATCCATGTT GCTCCTGTCGGGACTTTTGCCTTGCAACAGAAATCCATGTT < 41bp 0.834401656481082 0.462417500009485 0.52543736 0.32816696 prediction 0.668803312962164 Functional Loss - DEFB108B ENSG00000184276 CDS Human protein_coding chr11:71548504 chr11:71548508 nonsynonymous SNV 0.376 1 25 hm5C_associated_SNPs_50840 0 0 0 0 1 DEFB108B chr11:71548445 3'AG 71548445 Downstream 64bp
chr7 141443384 141443384 1 + G T LUAD 141443381 + 141443361 141443401 41 CCCTGAATCGTGTGCACTTACTTGGGCGAGTGGGTCAGGAC CCCTGAATCGTGTGCACTTACTTTGGCGAGTGGGTCAGGAC < 41bp 0.851756348597408 0.517362198926499 0.36284816 0.22507223 prediction 0.668788299341818 Functional Loss - SSBP1 ENSG00000106028 CDS Human protein_coding chr7:141443381 chr7:141443384 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50841 0 0 1 0 1 SSBP1 chr7:141443361 3'AG 141443361 Downstream 24bp
chrX 150885865 150885865 1 + G T UCEC 150885862 + 150885842 150885882 41 AATATGACTGCCACCCGACCCAAGAAAATGGTACTGTATGG AATATGACTGCCACCCGACCCAATAAAATGGTACTGTATGG < 41bp 0.834392767118502 0.483285781591464 0.3898481 0.5413209 prediction 0.668785534237003 Functional Loss - FATE1 ENSG00000147378 CDS Human protein_coding chrX:150885862 chrX:150885865 nonsynonymous SNV 0.093 3 24 hm5C_associated_SNPs_50842 0 0 0 0 1 FATE1 chrX:150885871 5'GT 150885871 Upstream 7bp
chr2 150061797 150061797 1 + G T UCEC 150061794 + 150061774 150061814 41 AGTTCGGACCGCCCAGCACACAAGGTCAGCATGCTGCTCCT AGTTCGGACCGCCCAGCACACAATGTCAGCATGCTGCTCCT < 41bp 0.864504901743476 0.530121331844624 0.8816941 0.054798186 prediction 0.668767139797706 Functional Loss - LYPD6B ENSG00000150556 CDS Human protein_coding chr2:150061794 chr2:150061797 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_50843 0 0 0 0 1 LYPD6B chr2:150061767 3'AG 150061767 Downstream 31bp
chr7 139086964 139086964 1 + G T UCEC 139086961 + 139086941 139086981 41 AGAAAAGATTAGCAGAAACTCAAGAAGAGATTAGTGCTGAA AGAAAAGATTAGCAGAAACTCAATAAGAGATTAGTGCTGAA < 41bp 0.834377342082272 0.499739465971489 0.53964555 0.18577299 prediction 0.668754684164544 Functional Loss - C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139086961 chr7:139086964 stopgain 1.000 1 24 hm5C_associated_SNPs_50844 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139086883 3'AG 139086883 Downstream 82bp
chr7 139086964 139086964 1 + G T UCEC 139086961 + 139086941 139086981 41 AGAAAAGATTAGCAGAAACTCAAGAAGAGATTAGTGCTGAA AGAAAAGATTAGCAGAAACTCAATAAGAGATTAGTGCTGAA < 41bp 0.834377342082272 0.499739465971489 0.53964555 0.18577299 prediction 0.668754684164544 Functional Loss - C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139086961 chr7:139086964 stopgain 1.000 1 24 hm5C_associated_SNPs_50844 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139086993 5'GT 139086993 Upstream 30bp
chr3 49052332 49052332 1 + G T SKCM 49052329 + 49052309 49052349 41 GCCTGCACACCTTGCCCACCCGTGAGGGCCACCATCTCGTG GCCTGCACACCTTGCCCACCCGTTAGGGCCACCATCTCGTG < 41bp 0.834370844090254 0.487439878894969 0.11836326 0.07192165 prediction 0.668741688180508 Functional Loss - WDR6 ENSG00000178252 CDS Human protein_coding chr3:49052329 chr3:49052332 stopgain 0.779 0 24 hm5C_associated_SNPs_50845 0 0 1 0 1 WDR6 chr3:49052258 3'AG 49052258 Downstream 75bp
chr1 161480649 161480649 1 + A C rs11810143 161480645 + 161480625 161480665 41 GCCCAGCATGGGCAGCTCTTCACCAATGGGGATCATTGTGG GCCCAGCATGGGCAGCTCTTCACCCATGGGGATCATTGTGG < 41bp 0.834365974504278 0.452438460773078 0.09460801 0.06496176 prediction 0.668731949008556 Functional Loss - FCGR2A ENSG00000143226 CDS Human protein_coding chr1:161480645 chr1:161480649 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_50846 0 0 1 0 2 FCGR2A chr1:161480624 3'AG 161480624 Downstream 26bp
chr1 161480649 161480649 1 + A C rs11810143 161480645 + 161480625 161480665 41 GCCCAGCATGGGCAGCTCTTCACCAATGGGGATCATTGTGG GCCCAGCATGGGCAGCTCTTCACCCATGGGGATCATTGTGG < 41bp 0.834365974504278 0.452438460773078 0.09460801 0.06496176 prediction 0.668731949008556 Functional Loss - FCGR2A ENSG00000143226 CDS Human protein_coding chr1:161480645 chr1:161480649 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_50846 0 0 1 0 2 FCGR2A chr1:161480746 5'GT 161480746 Upstream 98bp
chr19 55591079 55591079 1 + G T LIHC 55591076 + 55591056 55591096 41 AGCACCTGGTGACGTTCTGCCTGGGTGAGGACGATGGCGTG AGCACCTGGTGACGTTCTGCCTGTGTGAGGACGATGGCGTG < 41bp 0.854122240592956 0.519781050702036 0.24390972 0.049769938 prediction 0.668682379781838 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55591076 chr19:55591079 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_50847 0 0 0 0 1 EPS8L1 chr19:55591058 3'AG 55591058 Downstream 22bp
chr16 71417928 71417928 1 + G T COAD 71417925 + 71417905 71417945 41 ATTGGGCCTCTCAGAGATGTCCCGGTAAGCACCTCACCCCC ATTGGGCCTCTCAGAGATGTCCCTGTAAGCACCTCACCCCC < 41bp 0.834340699113035 0.472464291698804 0.49496835 0.16594899 prediction 0.66868139822607 Functional Loss - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71417925 chr16:71417928 nonsynonymous SNV 0.980 4 24 hm5C_associated_SNPs_50848 0 0 0 1 2 CALB2 chr16:71417873 3'AG 71417873 Downstream 56bp
chr16 71417928 71417928 1 + G T COAD 71417925 + 71417905 71417945 41 ATTGGGCCTCTCAGAGATGTCCCGGTAAGCACCTCACCCCC ATTGGGCCTCTCAGAGATGTCCCTGTAAGCACCTCACCCCC < 41bp 0.834340699113035 0.472464291698804 0.49496835 0.16594899 prediction 0.66868139822607 Functional Loss - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71417925 chr16:71417928 nonsynonymous SNV 0.980 4 24 hm5C_associated_SNPs_50848 0 0 0 1 2 CALB2 chr16:71417928 5'GT 71417928 Upstream 1bp
chr7 141740571 141740571 1 + G T LUSC 141740568 + 141740548 141740588 41 AAAAGTCGAGATGGAACTTCCTGGAGACAAAATTGGACTTC AAAAGTCGAGATGGAACTTCCTGTAGACAAAATTGGACTTC < 41bp 0.837917622198013 0.503610491015389 0.7918129 0.40240768 prediction 0.668614262365249 Functional Loss - MGAM ENSG00000257335 CDS Human protein_coding chr7:141740568 chr7:141740571 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_50849 0 0 0 0 2 MGAM chr7:141740522 3'AG 141740522 Downstream 50bp
chr7 141740571 141740571 1 + G T LUSC 141740568 + 141740548 141740588 41 AAAAGTCGAGATGGAACTTCCTGGAGACAAAATTGGACTTC AAAAGTCGAGATGGAACTTCCTGTAGACAAAATTGGACTTC < 41bp 0.837917622198013 0.503610491015389 0.7918129 0.40240768 prediction 0.668614262365249 Functional Loss - MGAM ENSG00000257335 CDS Human protein_coding chr7:141740568 chr7:141740571 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_50849 0 0 0 0 2 MGAM chr7:141740646 5'GT 141740646 Upstream 76bp
chr5 35873638 35873638 1 + A C rs191457074 35873634 + 35873614 35873654 41 CCTGCAGAGAAAGCTCCAACCGGCAGCAATGTATGAGATTA CCTGCAGAGAAAGCTCCAACCGGCCGCAATGTATGAGATTA < 41bp 0.834279597163704 0.465282824688367 0.2688658 0.16105705 prediction 0.668559194327408 Functional Loss - IL7R ENSG00000168685 CDS Human protein_coding chr5:35873634 chr5:35873638 synonymous SNV . 0 25 hm5C_associated_SNPs_50850 0 0 0 0 1 IL7R chr5:35873582 3'AG 35873582 Downstream 57bp
chr21 48068521 48068521 1 + G T LUSC 48068518 + 48068498 48068538 41 TCTCTTCTGTGCACACTATGCGCGGCCTAGAGCGGTGAGTG TCTCTTCTGTGCACACTATGCGCTGCCTAGAGCGGTGAGTG < 41bp 0.851951500774702 0.517729245591174 0.43893784 0.12625942 prediction 0.668444510367056 Functional Loss - PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48068518 chr21:48068521 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_50853 0 0 1 0 1 PRMT2 chr21:48068531 5'GT 48068531 Upstream 11bp
chr3 16261430 16261430 1 + G T GBM 16261427 + 16261407 16261447 41 CCACTTTCAGCTCCACAACACTGGACTTGGGCTCTGTGCAG CCACTTTCAGCTCCACAACACTGTACTTGGGCTCTGTGCAG < 41bp 0.853974231558708 0.519759385854038 0.5355942 0.15951392 prediction 0.66842969140934 Functional Loss - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16261427 chr3:16261430 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_50854 0 0 0 0 2 GALNT15 chr3:16261417 3'AG 16261417 Downstream 14bp
chr3 16261430 16261430 1 + G T GBM 16261427 + 16261407 16261447 41 CCACTTTCAGCTCCACAACACTGGACTTGGGCTCTGTGCAG CCACTTTCAGCTCCACAACACTGTACTTGGGCTCTGTGCAG < 41bp 0.853974231558708 0.519759385854038 0.5355942 0.15951392 prediction 0.66842969140934 Functional Loss - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16261427 chr3:16261430 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_50854 0 0 0 0 2 GALNT15 chr3:16261521 5'GT 16261521 Upstream 92bp
chr19 54515287 54515287 1 + G T HNSC 54515284 + 54515264 54515304 41 AGAGTCAGCCCGGAGCCTCCCCCGGCCCCACGCCTCACCTA AGAGTCAGCCCGGAGCCTCCCCCTGCCCCACGCCTCACCTA < 41bp 0.834179606281615 0.481340119017697 0.08066529 0.023939192 prediction 0.66835921256323 Functional Loss - CACNG6 ENSG00000130433 CDS Human protein_coding chr19:54515284 chr19:54515287 synonymous SNV . 0 24 hm5C_associated_SNPs_50856 0 0 0 0 1 CACNG6 chr19:54515205 3'AG 54515205 Downstream 83bp
chr11 74680685 74680685 1 + G T KIRC 74680682 + 74680662 74680702 41 AGCATCTTTCTCGTGGCCCACAGGAAAGATCCTACAGGAAT AGCATCTTTCTCGTGGCCCACAGTAAAGATCCTACAGGAAT < 41bp 0.834148359200865 0.495006000107662 0.5445742 0.08209261 prediction 0.66829671840173 Functional Loss - SPCS2 ENSG00000118363 CDS Human protein_coding chr11:74680682 chr11:74680685 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_50859 0 0 0 0 1 SPCS2 chr11:74680744 5'GT 74680744 Upstream 60bp
chr11 67256794 67256794 1 + G T UCEC 67256791 + 67256771 67256811 41 CTCCGCAACATCGCGGTGGGCAAGGACCCCCTGGAGGGCCA CTCCGCAACATCGCGGTGGGCAATGACCCCCTGGAGGGCCA < 41bp 0.834125000360722 0.470935178122472 0.44449174 0.16387218 prediction 0.668250000721444 Functional Loss - AIP ENSG00000110711 CDS Human protein_coding chr11:67256791 chr11:67256794 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_50861 0 0 1 0 1 AIP chr11:67256738 3'AG 67256738 Downstream 57bp
chr17 27380027 27380027 1 + A C UCEC 27380023 + 27380003 27380043 41 TGTCGAGGCAGAGGGTAGAACACCAGTGTCTTTCATCTGAG TGTCGAGGCAGAGGGTAGAACACCCGTGTCTTTCATCTGAG < 41bp 0.834112618885841 0.446885560082602 0.59154093 0.35800916 prediction 0.668225237771681 Functional Loss - PIPOX ENSG00000179761 CDS Human protein_coding chr17:27380023 chr17:27380027 nonsynonymous SNV 0.787 1 25 hm5C_associated_SNPs_50864 0 0 0 0 1 PIPOX chr17:27379938 3'AG 27379938 Downstream 90bp
chr16 11071251 11071251 1 + G T LUAD 11071248 + 11071228 11071268 41 ACGTGTACTCACTGGAGAACCAGGACAAGGTGGGTCCAGCC ACGTGTACTCACTGGAGAACCAGTACAAGGTGGGTCCAGCC < 41bp 0.834047626962468 0.48516015773256 0.8189219 0.91331553 prediction 0.668095253924937 Functional Loss - CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11071248 chr16:11071251 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_50867 0 0 1 0 1 CLEC16A chr16:11071256 5'GT 11071256 Upstream 6bp
chr12 111291336 111291336 1 + A C UCEC 111291332 + 111291312 111291352 41 TCAGGAAGATGGTGGAAAGCCGGAAGTCTTTTAAGTTCCGA TCAGGAAGATGGTGGAAAGCCGGACGTCTTTTAAGTTCCGA < 41bp 0.869844520854655 0.535806989882323 0.36842212 0.3700564 prediction 0.668075061944663 Functional Loss - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111291332 chr12:111291336 nonsynonymous SNV 0.979 4 25 hm5C_associated_SNPs_50869 0 0 0 0 1 CCDC63 chr12:111291378 5'GT 111291378 Upstream 43bp
chr2 27666891 27666891 1 + G T UCEC 27666888 + 27666868 27666908 41 AGCAGCTACTGGATCAAAATCAAGAAATCCGGGCATCACAG AGCAGCTACTGGATCAAAATCAATAAATCCGGGCATCACAG < 41bp 0.854177069496918 0.520169835990363 0.8786644 0.55822414 prediction 0.66801446701311 Functional Loss - KRTCAP3 ENSG00000157992 CDS Human protein_coding chr2:27666888 chr2:27666891 stopgain 0.000 0 24 hm5C_associated_SNPs_50870 0 0 0 0 2 KRTCAP3 chr2:27666816 3'AG 27666816 Downstream 76bp
chr2 27666891 27666891 1 + G T UCEC 27666888 + 27666868 27666908 41 AGCAGCTACTGGATCAAAATCAAGAAATCCGGGCATCACAG AGCAGCTACTGGATCAAAATCAATAAATCCGGGCATCACAG < 41bp 0.854177069496918 0.520169835990363 0.8786644 0.55822414 prediction 0.66801446701311 Functional Loss - KRTCAP3 ENSG00000157992 CDS Human protein_coding chr2:27666888 chr2:27666891 stopgain 0.000 0 24 hm5C_associated_SNPs_50870 0 0 0 0 2 KRTCAP3 chr2:27666928 5'GT 27666928 Upstream 38bp
chr1 3672089 3672089 1 + G T UCEC 3672086 + 3672066 3672106 41 CGGAGACCTGGAGAGGCACCCAGGACCTGTTCTTGGCCAGG CGGAGACCTGGAGAGGCACCCAGTACCTGTTCTTGGCCAGG < 41bp 0.864873555333985 0.53087066351324 0.8910343 0.18061084 prediction 0.668005783641489 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3672086 chr1:3672089 nonsynonymous SNV 0.005 3 24 hm5C_associated_SNPs_50871 0 0 0 0 2 CCDC27 chr1:3672021 3'AG 3672021 Downstream 69bp
chr1 3672089 3672089 1 + G T UCEC 3672086 + 3672066 3672106 41 CGGAGACCTGGAGAGGCACCCAGGACCTGTTCTTGGCCAGG CGGAGACCTGGAGAGGCACCCAGTACCTGTTCTTGGCCAGG < 41bp 0.864873555333985 0.53087066351324 0.8910343 0.18061084 prediction 0.668005783641489 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3672086 chr1:3672089 nonsynonymous SNV 0.005 3 24 hm5C_associated_SNPs_50871 0 0 0 0 2 CCDC27 chr1:3672131 5'GT 3672131 Upstream 43bp
chrX 3002668 3002668 1 + G T PAAD 3002665 + 3002645 3002685 41 GCCCATGAAGGCTGAACGAGCTGGATCCATTATGGTGAAGG GCCCATGAAGGCTGAACGAGCTGTATCCATTATGGTGAAGG < 41bp 0.860758772256491 0.526818787376543 0.35162675 0.16887504 prediction 0.667879969759897 Functional Loss - ARSF ENSG00000062096 CDS Human protein_coding chrX:3002665 chrX:3002668 nonsynonymous SNV 0.525 2 24 hm5C_associated_SNPs_50874 0 0 0 0 1 ARSF chrX:3002707 5'GT 3002707 Upstream 40bp
chr9 12708116 12708116 1 + G T LUAD 12708113 + 12708093 12708133 41 TTGTTACTGCTCCAGACAACCTGGGATACACTTATGAAATT TTGTTACTGCTCCAGACAACCTGTGATACACTTATGAAATT < 41bp 0.834397276848373 0.500472229298548 0.4769814 0.11848688 prediction 0.667850095099651 Functional Loss - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12708113 chr9:12708116 stopgain 0.998 1 24 hm5C_associated_SNPs_50875 0 0 0 0 1 TYRP1 chr9:12708143 5'GT 12708143 Upstream 28bp
chr22 50955905 50955905 1 + G T LUSC 50955902 + 50955882 50955922 41 CCAGGCCCTTGATTTCATCTCTGGAAAGAGGTGAGTTCTGC CCAGGCCCTTGATTTCATCTCTGTAAAGAGGTGAGTTCTGC < 41bp 0.847862161835152 0.513969714099049 0.09492287 0.09309426 prediction 0.667784895472206 Functional Loss - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50955902 chr22:50955905 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_50877 0 0 1 0 2 NCAPH2 chr22:50955856 3'AG 50955856 Downstream 50bp
chr22 50955905 50955905 1 + G T LUSC 50955902 + 50955882 50955922 41 CCAGGCCCTTGATTTCATCTCTGGAAAGAGGTGAGTTCTGC CCAGGCCCTTGATTTCATCTCTGTAAAGAGGTGAGTTCTGC < 41bp 0.847862161835152 0.513969714099049 0.09492287 0.09309426 prediction 0.667784895472206 Functional Loss - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50955902 chr22:50955905 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_50877 0 0 1 0 2 NCAPH2 chr22:50955911 5'GT 50955911 Upstream 7bp
chr21 45811422 45811422 1 + G T CESC 45811419 + 45811399 45811439 41 CCCAGGTGCTGCGGGAGCTGCTGGGGGACTTCACGCAGCCG CCCAGGTGCTGCGGGAGCTGCTGTGGGACTTCACGCAGCCG < 41bp 0.833885252586164 0.478361889385593 0.9166641 0.8663285 prediction 0.667770505172327 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45811419 chr21:45811422 nonsynonymous SNV 0.986 4 24 hm5C_associated_SNPs_50879 0 0 0 0 1 TRPM2 chr21:45811508 5'GT 45811508 Upstream 87bp
chr15 51993418 51993418 1 + G T LUAD 51993415 + 51993395 51993435 41 AAAAGATGATAACTCCAACCCAGGAGGAAAGACAGATGAAC AAAAGATGATAACTCCAACCCAGTAGGAAAGACAGATGAAC < 41bp 0.840249599754489 0.506407994545006 0.8411559 0.7316545 prediction 0.667683210418967 Functional Loss - SCG3 ENSG00000104112 CDS Human protein_coding chr15:51993415 chr15:51993418 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_50880 0 0 1 0 1 SCG3 chr15:51993441 5'GT 51993441 Upstream 24bp
chr4 154544192 154544192 1 + G T UCEC 154544189 + 154544169 154544209 41 AGCAGCACCAGCAGCTCCGACGGGGATAAGAAGCCCATGGT AGCAGCACCAGCAGCTCCGACGGTGATAAGAAGCCCATGGT < 41bp 0.853034071111727 0.519211240307842 0.90877867 0.5755056 prediction 0.667645661607768 Functional Loss - TMEM131L ENSG00000121210 CDS Human protein_coding chr4:154544189 chr4:154544192 synonymous SNV . 0 24 hm5C_associated_SNPs_50881 0 0 0 0 1 TMEM131L chr4:154544235 5'GT 154544235 Upstream 44bp
chr19 54401741 54401741 1 + G T LUAD 54401738 + 54401718 54401758 41 TCTGATGAGCTCTACGCCATCAAGATCTTGAAAAAGGACGT TCTGATGAGCTCTACGCCATCAATATCTTGAAAAAGGACGT < 41bp 0.833815780201219 0.478095727887759 0.38823003 0.22167078 prediction 0.667631560402438 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54401738 chr19:54401741 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_50882 0 0 0 0 1 PRKCG chr19:54401694 3'AG 54401694 Downstream 48bp
chr19 58563890 58563890 1 + A C rs373543521 58563886 + 58563866 58563906 41 GCTGATTCTGGATGCAGTGGCAGCAGCCCCAGCACTCCCCG GCTGATTCTGGATGCAGTGGCAGCCGCCCCAGCACTCCCCG < 41bp 0.833771035239142 0.475155355113421 0.87574816 0.87129545 prediction 0.667542070478285 Functional Loss - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58563886 chr19:58563890 synonymous SNV . 0 25 hm5C_associated_SNPs_50885 0 0 0 0 1 ZSCAN1 chr19:58563858 3'AG 58563858 Downstream 33bp
chr19 48254807 48254807 1 + A C LUSC 48254803 + 48254783 48254823 41 TGGACAGGCCGTTGGTTGGCCAGGATGAGTTTTTCCTGGAG TGGACAGGCCGTTGGTTGGCCAGGCTGAGTTTTTCCTGGAG < 41bp 0.833733284942079 0.463911902314273 0.8085935 0.8125342 prediction 0.667466569884157 Functional Loss - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48254803 chr19:48254807 nonsynonymous SNV 0.806 4 25 hm5C_associated_SNPs_50887 0 0 1 0 1 NOP53 chr19:48254847 5'GT 48254847 Upstream 41bp
chr1 28862433 28862433 1 + G T LUAD 28862430 + 28862410 28862450 41 TGCTGAAATCCAGGGGAAGCCGGGGCCACGTGAGATTCCAG TGCTGAAATCCAGGGGAAGCCGGTGCCACGTGAGATTCCAG < 41bp 0.862808225079881 0.529104034307159 0.92400885 0.89286757 prediction 0.667408381545444 Functional Loss - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28862430 chr1:28862433 nonsynonymous SNV 0.093 3 24 hm5C_associated_SNPs_50888 0 0 1 0 1 RCC1 chr1:28862383 3'AG 28862383 Downstream 51bp
chr12 12588624 12588624 1 + G T BLCA 12588621 + 12588601 12588641 41 TGGAGAAACTGGACTCTCAGCAGGTGTTGCAGCTCTGCCTC TGGAGAAACTGGACTCTCAGCAGTTGTTGCAGCTCTGCCTC < 41bp 0.87060253950747 0.536916718366991 0.9308145 0.53661865 prediction 0.667371642280958 Functional Loss - BORCS5 ENSG00000165714 CDS Human protein_coding chr12:12588621 chr12:12588624 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_50890 0 0 1 0 2 BORCS5 chr12:12588562 3'AG 12588562 Downstream 63bp
chr12 12588624 12588624 1 + G T BLCA 12588621 + 12588601 12588641 41 TGGAGAAACTGGACTCTCAGCAGGTGTTGCAGCTCTGCCTC TGGAGAAACTGGACTCTCAGCAGTTGTTGCAGCTCTGCCTC < 41bp 0.87060253950747 0.536916718366991 0.9308145 0.53661865 prediction 0.667371642280958 Functional Loss - BORCS5 ENSG00000165714 CDS Human protein_coding chr12:12588621 chr12:12588624 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_50890 0 0 1 0 2 BORCS5 chr12:12588719 5'GT 12588719 Upstream 96bp
chr10 134259223 134259223 1 + G T SARC 134259220 + 134259200 134259240 41 CGTGTCCATGGGCCCAGTGCCTGGCGTGTCCTCCCTGGGAG CGTGTCCATGGGCCCAGTGCCTGTCGTGTCCTCCCTGGGAG < 41bp 0.833684626606876 0.475529664326818 0.5187299 0.062284827 prediction 0.667369253213751 Functional Loss - C10orf91 ENSG00000180066 CDS Human lincRNA chr10:134259220 chr10:134259223 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_50891 0 0 0 0 1 C10orf91 chr10:134259283 5'GT 134259283 Upstream 61bp
chr1 26885394 26885394 1 + G T BLCA 26885391 + 26885371 26885411 41 GATGGAAGACGACGGCAAGCCTCGTGCCCCGCAGGCACCCC GATGGAAGACGACGGCAAGCCTCTTGCCCCGCAGGCACCCC < 41bp 0.833665032171389 0.483462876940944 0.13345301 0.040768504 prediction 0.667330064342779 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26885391 chr1:26885394 nonsynonymous SNV 0.357 0 24 hm5C_associated_SNPs_50893 0 0 1 0 2 RPS6KA1 chr1:26885298 3'AG 26885298 Downstream 97bp
chr1 26885394 26885394 1 + G T BLCA 26885391 + 26885371 26885411 41 GATGGAAGACGACGGCAAGCCTCGTGCCCCGCAGGCACCCC GATGGAAGACGACGGCAAGCCTCTTGCCCCGCAGGCACCCC < 41bp 0.833665032171389 0.483462876940944 0.13345301 0.040768504 prediction 0.667330064342779 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26885391 chr1:26885394 nonsynonymous SNV 0.357 0 24 hm5C_associated_SNPs_50893 0 0 1 0 2 RPS6KA1 chr1:26885428 5'GT 26885428 Upstream 35bp
chr19 42090761 42090761 1 + A C LUSC 42090757 + 42090737 42090777 41 GGTTGGGAGTCTTCTGGTGGCTGCACTTGTGTGTTTCCTGC GGTTGGGAGTCTTCTGGTGGCTGCCCTTGTGTGTTTCCTGC < 41bp 0.833655828107764 0.453463549741957 0.26703268 0.096741766 prediction 0.667311656215528 Functional Loss - CEACAM21 ENSG00000007129 CDS Human protein_coding chr19:42090757 chr19:42090761 synonymous SNV . 0 25 hm5C_associated_SNPs_50894 0 0 0 0 3 CEACAM21 chr19:42090700 3'AG 42090700 Downstream 62bp
chr19 42090761 42090761 1 + A C LUSC 42090757 + 42090737 42090777 41 GGTTGGGAGTCTTCTGGTGGCTGCACTTGTGTGTTTCCTGC GGTTGGGAGTCTTCTGGTGGCTGCCCTTGTGTGTTTCCTGC < 41bp 0.833655828107764 0.453463549741957 0.26703268 0.096741766 prediction 0.667311656215528 Functional Loss - CEACAM21 ENSG00000007129 CDS Human protein_coding chr19:42090757 chr19:42090761 synonymous SNV . 0 25 hm5C_associated_SNPs_50894 0 0 0 0 3 CEACAM21 chr19:42090703 3'AG 42090703 Downstream 59bp
chr19 42090761 42090761 1 + A C LUSC 42090757 + 42090737 42090777 41 GGTTGGGAGTCTTCTGGTGGCTGCACTTGTGTGTTTCCTGC GGTTGGGAGTCTTCTGGTGGCTGCCCTTGTGTGTTTCCTGC < 41bp 0.833655828107764 0.453463549741957 0.26703268 0.096741766 prediction 0.667311656215528 Functional Loss - CEACAM21 ENSG00000007129 CDS Human protein_coding chr19:42090757 chr19:42090761 synonymous SNV . 0 25 hm5C_associated_SNPs_50894 0 0 0 0 3 CEACAM21 chr19:42090796 5'GT 42090796 Upstream 36bp
chr21 44441505 44441505 1 + G T LUAD 44441502 + 44441482 44441522 41 GGCGTCCTGCCAAAGCATGCCACGAACGTGATGCGGTCCTG GGCGTCCTGCCAAAGCATGCCACTAACGTGATGCGGTCCTG < 41bp 0.858270176145873 0.524678280999305 0.09306109 0.036440164 prediction 0.667183790293136 Functional Loss - PKNOX1 ENSG00000160199 CDS Human protein_coding chr21:44441502 chr21:44441505 synonymous SNV . 0 24 hm5C_associated_SNPs_50895 0 0 0 0 2 PKNOX1 chr21:44441413 3'AG 44441413 Downstream 93bp
chr21 44441505 44441505 1 + G T LUAD 44441502 + 44441482 44441522 41 GGCGTCCTGCCAAAGCATGCCACGAACGTGATGCGGTCCTG GGCGTCCTGCCAAAGCATGCCACTAACGTGATGCGGTCCTG < 41bp 0.858270176145873 0.524678280999305 0.09306109 0.036440164 prediction 0.667183790293136 Functional Loss - PKNOX1 ENSG00000160199 CDS Human protein_coding chr21:44441502 chr21:44441505 synonymous SNV . 0 24 hm5C_associated_SNPs_50895 0 0 0 0 2 PKNOX1 chr21:44441541 5'GT 44441541 Upstream 37bp
chr7 100773706 100773706 1 + G T UCEC 100773703 + 100773683 100773723 41 CCTCTCTGTCCCGGTGCAGACAAGGGCATGGCCCCCGCCCT CCTCTCTGTCCCGGTGCAGACAATGGCATGGCCCCCGCCCT < 41bp 0.833585115574081 0.468817508332533 0.92327046 0.24716678 prediction 0.667170231148162 Functional Loss - SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100773703 chr7:100773706 nonsynonymous SNV 0.110 1 24 hm5C_associated_SNPs_50896 0 0 1 0 1 SERPINE1 chr7:100773702 3'AG 100773702 Downstream 5bp
chr17 55065102 55065102 1 + G T UCEC 55065099 + 55065079 55065119 41 TGTGGATAATCCCGTGGGCACTGGGTTCAGTTATGTGAATG TGTGGATAATCCCGTGGGCACTGTGTTCAGTTATGTGAATG < 41bp 0.857090400321567 0.523562218971134 0.2578755 0.122780114 prediction 0.667056362700866 Functional Loss - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55065099 chr17:55065102 nonsynonymous SNV 0.686 5 24 hm5C_associated_SNPs_50897 0 0 1 0 1 SCPEP1 chr17:55065056 3'AG 55065056 Downstream 47bp
chr19 42399553 42399553 1 + G T UCEC 42399550 + 42399530 42399570 41 TGTCCCTGGACAGCCCAGACCGGGAACCAGGTGAGAGTTTC TGTCCCTGGACAGCCCAGACCGGTAACCAGGTGAGAGTTTC < 41bp 0.833502556191042 0.489955390331562 0.9157411 0.5597479 prediction 0.667005112382083 Functional Loss - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42399550 chr19:42399553 stopgain 0.983 0 24 hm5C_associated_SNPs_50898 0 0 1 0 1 ARHGEF1 chr19:42399559 5'GT 42399559 Upstream 7bp
chr19 6921762 6921762 1 + G T SARC 6921759 + 6921739 6921779 41 GAGAGGCCCATCTGTGTTTCCTGGAGCACTGATGTGAAGGG GAGAGGCCCATCTGTGTTTCCTGTAGCACTGATGTGAAGGG < 41bp 0.833497369862687 0.481205470830415 0.47345155 0.33882976 prediction 0.666994739725374 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6921759 chr19:6921762 nonsynonymous SNV 0.118 4 24 hm5C_associated_SNPs_50900 0 0 0 0 1 ADGRE1 chr19:6921724 3'AG 6921724 Downstream 39bp
chr12 113822701 113822701 1 + G T LUAD 113822698 + 113822678 113822718 41 GTGGACTACAAGGCGTTCATCCCGGGTGGGCCCAGCCCCGG GTGGACTACAAGGCGTTCATCCCTGGTGGGCCCAGCCCCGG < 41bp 0.833495565455201 0.466503064492383 0.89009696 0.2799474 prediction 0.666991130910402 Functional Loss - PLBD2 ENSG00000151176 CDS Human protein_coding chr12:113822698 chr12:113822701 synonymous SNV . 0 24 hm5C_associated_SNPs_50901 0 0 1 0 2 PLBD2 chr12:113822656 3'AG 113822656 Downstream 46bp
chr12 113822701 113822701 1 + G T LUAD 113822698 + 113822678 113822718 41 GTGGACTACAAGGCGTTCATCCCGGGTGGGCCCAGCCCCGG GTGGACTACAAGGCGTTCATCCCTGGTGGGCCCAGCCCCGG < 41bp 0.833495565455201 0.466503064492383 0.89009696 0.2799474 prediction 0.666991130910402 Functional Loss - PLBD2 ENSG00000151176 CDS Human protein_coding chr12:113822698 chr12:113822701 synonymous SNV . 0 24 hm5C_associated_SNPs_50901 0 0 1 0 2 PLBD2 chr12:113822751 5'GT 113822751 Upstream 51bp
chr10 134013933 134013933 1 + G T READ 134013930 + 134013910 134013950 41 TCACACTACTGGAGCAAGAACTGGGCCAAGGCCGCAGCCTT TCACACTACTGGAGCAAGAACTGTGCCAAGGCCGCAGCCTT < 41bp 0.833416303646688 0.458504971320296 0.7235902 0.1917997 prediction 0.666832607293377 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134013930 chr10:134013933 nonsynonymous SNV 0.988 5 24 hm5C_associated_SNPs_50904 0 0 0 0 2 DPYSL4 chr10:134013860 3'AG 134013860 Downstream 74bp
chr10 134013933 134013933 1 + G T READ 134013930 + 134013910 134013950 41 TCACACTACTGGAGCAAGAACTGGGCCAAGGCCGCAGCCTT TCACACTACTGGAGCAAGAACTGTGCCAAGGCCGCAGCCTT < 41bp 0.833416303646688 0.458504971320296 0.7235902 0.1917997 prediction 0.666832607293377 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134013930 chr10:134013933 nonsynonymous SNV 0.988 5 24 hm5C_associated_SNPs_50904 0 0 0 0 2 DPYSL4 chr10:134014016 5'GT 134014016 Upstream 84bp
chrX 26211971 26211971 1 + G T LUAD 26211968 + 26211948 26211988 41 ACAGGCCACAGCCATCATGCCTCGGGGTCACAAGAGTAAGC ACAGGCCACAGCCATCATGCCTCTGGGTCACAAGAGTAAGC < 41bp 0.842274594839962 0.50890295662317 0.081608355 0.016426265 prediction 0.666743276433584 Functional Loss - MAGEB6 ENSG00000176746 CDS Human protein_coding chrX:26211968 chrX:26211971 nonsynonymous SNV 0.973 3 24 hm5C_associated_SNPs_50908 0 0 0 0 1 MAGEB6 chrX:26211903 3'AG 26211903 Downstream 69bp
chr19 10363251 10363251 1 + A C rs113197610 10363247 + 10363227 10363267 41 GTCTCCCGGAGCCCGTGCTGCGCAAAGTCGAGCTCCCGGTA GTCTCCCGGAGCCCGTGCTGCGCACAGTCGAGCTCCCGGTA < 41bp 0.833361838502661 0.450473560468483 0.38847008 0.1723178 prediction 0.666723677005322 Functional Loss - MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10363247 chr19:10363251 nonsynonymous SNV 0.137 0 25 hm5C_associated_SNPs_50909 0 0 1 0 1 MRPL4 chr19:10363227 3'AG 10363227 Downstream 25bp
chr22 18979405 18979405 1 + A C rs1210635 18979401 + 18979381 18979421 41 CAGCGAGGGGGCTCCACTTCCGAGACCCCTGGAGAGGCCCG CAGCGAGGGGGCTCCACTTCCGAGCCCCCTGGAGAGGCCCG < 41bp 0.835654681254142 0.502344343139245 0.88342893 0.86797094 prediction 0.666620676229795 Functional Loss - DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979401 chr22:18979405 . . 0 25 hm5C_associated_SNPs_50910 0 0 0 0 1 DGCR5 chr22:18979330 3'AG 18979330 Downstream 76bp
chr3 14708972 14708972 1 + G T UCEC 14708969 + 14708949 14708989 41 TTGGGTATTTTGCCTTTGCCCGAGACAAAGAGTTGAGAAAC TTGGGTATTTTGCCTTTGCCCGATACAAAGAGTTGAGAAAC < 41bp 0.841263277092999 0.507985765843459 0.90287757 0.63706905 prediction 0.66655502249908 Functional Loss - CCDC174 ENSG00000154781 CDS Human protein_coding chr3:14708969 chr3:14708972 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_50911 0 0 1 0 2 CCDC174 chr3:14708931 3'AG 14708931 Downstream 42bp
chr3 14708972 14708972 1 + G T UCEC 14708969 + 14708949 14708989 41 TTGGGTATTTTGCCTTTGCCCGAGACAAAGAGTTGAGAAAC TTGGGTATTTTGCCTTTGCCCGATACAAAGAGTTGAGAAAC < 41bp 0.841263277092999 0.507985765843459 0.90287757 0.63706905 prediction 0.66655502249908 Functional Loss - CCDC174 ENSG00000154781 CDS Human protein_coding chr3:14708969 chr3:14708972 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_50911 0 0 1 0 2 CCDC174 chr3:14709025 5'GT 14709025 Upstream 54bp
chr4 169842780 169842780 1 + G T LUAD 169842777 + 169842757 169842797 41 AAGATGCTGGTGCGTGAGAACGGGGTGCACTCTCTGATCAT AAGATGCTGGTGCGTGAGAACGGTGTGCACTCTCTGATCAT < 41bp 0.833240875450989 0.491453186789184 0.9309131 0.4536246 prediction 0.666481750901977 Functional Loss - PALLD ENSG00000129116 CDS Human protein_coding chr4:169842777 chr4:169842780 synonymous SNV . 0 24 hm5C_associated_SNPs_50912 0 0 1 0 1 PALLD chr4:169842685 3'AG 169842685 Downstream 96bp
chr5 36680558 36680558 1 + G T LUAD 36680555 + 36680535 36680575 41 AGAACAATGGCGTGGACAAGCGCGTCACCAGATTCGTGCTC AGAACAATGGCGTGGACAAGCGCTTCACCAGATTCGTGCTC < 41bp 0.833224408980855 0.487950061625643 0.06981459 0.025521278 prediction 0.666448817961709 Functional Loss - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36680555 chr5:36680558 nonsynonymous SNV 0.412 3 24 hm5C_associated_SNPs_50913 0 0 0 0 1 SLC1A3 chr5:36680497 3'AG 36680497 Downstream 62bp
chr20 62724238 62724238 1 + G T LUAD 62724235 + 62724215 62724255 41 CTCGGGCTCAAGGTCACCATCGTGGGGCTCTACCTGGCCGT CTCGGGCTCAAGGTCACCATCGTTGGGCTCTACCTGGCCGT < 41bp 0.833201343156317 0.465163531793243 0.95097566 0.21740529 prediction 0.666402686312634 Functional Loss - OPRL1 ENSG00000125510 CDS Human protein_coding chr20:62724235 chr20:62724238 synonymous SNV . 0 24 hm5C_associated_SNPs_50914 0 0 0 0 2 OPRL1 chr20:62724291 5'GT 62724291 Upstream 54bp
chr20 62724238 62724238 1 + G T LUAD 62724235 + 62724215 62724255 41 CTCGGGCTCAAGGTCACCATCGTGGGGCTCTACCTGGCCGT CTCGGGCTCAAGGTCACCATCGTTGGGCTCTACCTGGCCGT < 41bp 0.833201343156317 0.465163531793243 0.95097566 0.21740529 prediction 0.666402686312634 Functional Loss - OPRL1 ENSG00000125510 CDS Human protein_coding chr20:62724235 chr20:62724238 synonymous SNV . 0 24 hm5C_associated_SNPs_50914 0 0 0 0 2 OPRL1 chr20:62724306 5'GT 62724306 Upstream 69bp
chr14 24030568 24030568 1 - C A BLCA 24030571 - 24030551 24030591 41 ATGTCCAGCATCCTCCCCATCTGGACCCCTCCCCAGGAGGT ATGTCCAGCATCCTCCCCATCTGTACCCCTCCCCAGGAGGT < 41bp 0.860429390716382 0.527265675647177 0.5118244 0.0915257 prediction 0.666327430138411 Functional Loss - AP1G2 ENSG00000213983 CDS Human protein_coding chr14:24030571 chr14:24030568 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_50917 0 0 0 0 1 AP1G2 chr14:24030640 3'AG 24030640 Downstream 73bp
chr8 67808441 67808441 1 + G T UCEC 67808438 + 67808418 67808458 41 AAGCATCACAGTGTACATCCCAGGAAAGAAGTTTGGGGAGG AAGCATCACAGTGTACATCCCAGTAAAGAAGTTTGGGGAGG < 41bp 0.836555141633159 0.503396555183323 0.51437044 0.16417354 prediction 0.666317172899672 Functional Loss - MCMDC2 ENSG00000178460 CDS Human protein_coding chr8:67808438 chr8:67808441 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50918 0 0 0 0 1 MCMDC2 chr8:67808405 3'AG 67808405 Downstream 37bp
chr19 55019216 55019216 1 + G T LUSC 55019213 + 55019193 55019233 41 TTGGGGTTCAAACATTCCGCCTGGAGAGGGAGGATAGAGCC TTGGGGTTCAAACATTCCGCCTGTAGAGGGAGGATAGAGCC < 41bp 0.833108874906854 0.485758120224461 0.07837558 0.020113856 prediction 0.666217749813708 Functional Loss - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019213 chr19:55019216 stopgain 0.068 0 24 hm5C_associated_SNPs_50921 0 0 0 0 1 LAIR2 chr19:55019305 5'GT 55019305 Upstream 90bp
chr17 43175843 43175843 1 + G T LUAD 43175840 + 43175820 43175860 41 GTTCTGATCCGAGAGATCACCAGGCGGGTTCACCTGGAGGG GTTCTGATCCGAGAGATCACCAGTCGGGTTCACCTGGAGGG < 41bp 0.83306921211956 0.471435022979682 0.90682316 0.3892014 prediction 0.66613842423912 Functional Loss - NMT1 ENSG00000136448 CDS Human protein_coding chr17:43175840 chr17:43175843 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50923 0 0 1 0 2 NMT1 chr17:43175750 3'AG 43175750 Downstream 94bp
chr17 43175843 43175843 1 + G T LUAD 43175840 + 43175820 43175860 41 GTTCTGATCCGAGAGATCACCAGGCGGGTTCACCTGGAGGG GTTCTGATCCGAGAGATCACCAGTCGGGTTCACCTGGAGGG < 41bp 0.83306921211956 0.471435022979682 0.90682316 0.3892014 prediction 0.66613842423912 Functional Loss - NMT1 ENSG00000136448 CDS Human protein_coding chr17:43175840 chr17:43175843 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50923 0 0 1 0 2 NMT1 chr17:43175920 5'GT 43175920 Upstream 78bp
chr20 32332916 32332916 1 + G T rs577699019 32332913 + 32332893 32332933 41 GCGGGTATGACCCCAGATGACGAGGATGTATTTCTCTGCGG GCGGGTATGACCCCAGATGACGATGATGTATTTCTCTGCGG < 41bp 0.833051904054452 0.47247242290416 0.8648776 0.22195628 prediction 0.666103808108904 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32332913 chr20:32332916 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_50925 0 0 0 1 1 ZNF341 chr20:32332909 3'AG 32332909 Downstream 8bp
chr1 226253422 226253422 1 + A C BLCA 226253418 + 226253398 226253438 41 AGTCCACTGAACTTCTGATTCGCAAACTTCCCTTCCAGCGT AGTCCACTGAACTTCTGATTCGCACACTTCCCTTCCAGCGT < 41bp 0.878573462857499 0.545551048496694 0.12362555 0.049224645 prediction 0.666044828721611 Functional Loss - H3F3A ENSG00000163041 CDS Human protein_coding chr1:226253418 chr1:226253422 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_50926 0 0 0 0 2 H3F3A chr1:226253357 3'AG 226253357 Downstream 66bp
chr1 226253422 226253422 1 + A C BLCA 226253418 + 226253398 226253438 41 AGTCCACTGAACTTCTGATTCGCAAACTTCCCTTCCAGCGT AGTCCACTGAACTTCTGATTCGCACACTTCCCTTCCAGCGT < 41bp 0.878573462857499 0.545551048496694 0.12362555 0.049224645 prediction 0.666044828721611 Functional Loss - H3F3A ENSG00000163041 CDS Human protein_coding chr1:226253418 chr1:226253422 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_50926 0 0 0 0 2 H3F3A chr1:226253510 5'GT 226253510 Upstream 89bp
chr11 70171109 70171109 1 + G T SKCM 70171106 + 70171086 70171126 41 TATTTGAACACCACAAAGCTCTGGATGAAAAGGTGCCATCA TATTTGAACACCACAAAGCTCTGTATGAAAAGGTGCCATCA < 41bp 0.834123737516382 0.501144488785649 0.87644273 0.33570552 prediction 0.665958497461467 Functional Loss - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70171106 chr11:70171109 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_50930 0 0 1 2 1 PPFIA1 chr11:70171117 5'GT 70171117 Upstream 9bp
chr6 13595765 13595765 1 + A C rs145972102 13595761 + 13595741 13595781 41 GGAGTTGTGGCTGAGAATTACAAGAGTCCAATTTGTCCAGC GGAGTTGTGGCTGAGAATTACAAGCGTCCAATTTGTCCAGC < 41bp 0.870894734550948 0.53794238876652 0.56595546 0.23801792 prediction 0.665904691568855 Functional Loss - SIRT5 ENSG00000124523 CDS Human protein_coding chr6:13595761 chr6:13595765 nonsynonymous SNV 0.990 1 25 hm5C_associated_SNPs_50931 0 0 0 0 1 SIRT5 chr6:13595709 3'AG 13595709 Downstream 57bp
chr1 28598902 28598902 1 + G T UCEC 28598899 + 28598879 28598919 41 CTGGGCCTCCACCGGGCCCCCGAGAAGCTGCGCAAACTCAG CTGGGCCTCCACCGGGCCCCCGATAAGCTGCGCAAACTCAG < 41bp 0.856587445169369 0.523649384584853 0.5734806 0.2259374 prediction 0.665876121169032 Functional Loss - SESN2 ENSG00000130766 CDS Human protein_coding chr1:28598899 chr1:28598902 nonsynonymous SNV 0.892 0 24 hm5C_associated_SNPs_50935 0 0 1 0 1 SESN2 chr1:28598977 5'GT 28598977 Upstream 76bp
chr1 1563074 1563074 1 + G T LUAD 1563071 + 1563051 1563091 41 AGGAACCAGCCCGAGGCCACCAGGGTGCTCCTGAGTGCTGG AGGAACCAGCCCGAGGCCACCAGTGTGCTCCTGAGTGCTGG < 41bp 0.839547210569139 0.50662682350136 0.90460813 0.22447738 prediction 0.665840774135559 Functional Loss - MIB2 ENSG00000197530 CDS Human protein_coding chr1:1563071 chr1:1563074 nonsynonymous SNV 0.298 1 24 hm5C_associated_SNPs_50937 0 0 1 0 1 MIB2 chr1:1563053 3'AG 1563053 Downstream 22bp
chr20 3784086 3784086 1 + G T GBM 3784083 + 3784063 3784103 41 TTGCCCCTGGAACGCGACGCCGAGAGCTTCCTACTGAAGAG TTGCCCCTGGAACGCGACGCCGATAGCTTCCTACTGAAGAG < 41bp 0.848818445145857 0.515900005392161 0.7934731 0.24463421 prediction 0.665836879507391 Functional Loss - CDC25B ENSG00000101224 CDS Human protein_coding chr20:3784083 chr20:3784086 nonsynonymous SNV 0.089 4 24 hm5C_associated_SNPs_50938 0 0 1 0 2 CDC25B chr20:3784051 3'AG 3784051 Downstream 36bp
chr20 3784086 3784086 1 + G T GBM 3784083 + 3784063 3784103 41 TTGCCCCTGGAACGCGACGCCGAGAGCTTCCTACTGAAGAG TTGCCCCTGGAACGCGACGCCGATAGCTTCCTACTGAAGAG < 41bp 0.848818445145857 0.515900005392161 0.7934731 0.24463421 prediction 0.665836879507391 Functional Loss - CDC25B ENSG00000101224 CDS Human protein_coding chr20:3784083 chr20:3784086 nonsynonymous SNV 0.089 4 24 hm5C_associated_SNPs_50938 0 0 1 0 2 CDC25B chr20:3784184 5'GT 3784184 Upstream 99bp
chr16 28975123 28975123 1 + G T HNSC 28975120 + 28975100 28975140 41 CTTTGATGGGACAAAGCTTTCAGGCAGGGAGCTGCCAGCTG CTTTGATGGGACAAAGCTTTCAGTCAGGGAGCTGCCAGCTG < 41bp 0.8445187969315 0.511679908974748 0.49704674 0.1245431 prediction 0.665677775913504 Functional Loss - NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28975120 chr16:28975123 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_50945 0 0 1 0 1 NFATC2IP chr16:28975026 3'AG 28975026 Downstream 98bp
chr3 186358463 186358463 1 + G T UCEC 186358460 + 186358440 186358480 41 TCAACCGAGTGAACGACGCCCAGGAATACAGACGGGCAAGT TCAACCGAGTGAACGACGCCCAGTAATACAGACGGGCAAGT < 41bp 0.832815103699693 0.495951438559386 0.8447697 0.58338475 prediction 0.665630207399385 Functional Loss - FETUB ENSG00000090512 CDS Human protein_coding chr3:186358460 chr3:186358463 stopgain 0.094 0 24 hm5C_associated_SNPs_50947 0 0 0 0 1 FETUB chr3:186358478 5'GT 186358478 Upstream 16bp
chr19 56172528 56172528 1 + G T rs73936311 56172525 + 56172505 56172545 41 AGACAAGCCCGGCGCCTCTACGTGGGCAACATCCCCTTTGG AGACAAGCCCGGCGCCTCTACGTTGGCAACATCCCCTTTGG < 41bp 0.832745151675187 0.458935912920139 0.84693074 0.27100116 prediction 0.665490303350375 Functional Loss - U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172525 chr19:56172528 synonymous SNV . 0 24 hm5C_associated_SNPs_50949 0 0 1 0 1 U2AF2 chr19:56172555 5'GT 56172555 Upstream 28bp
chr22 27021500 27021500 1 + G T LGG 27021497 + 27021477 27021517 41 GGCAGCAGTACATTCTGGAACGAGGCGAATATCCAAGCTGG GGCAGCAGTACATTCTGGAACGATGCGAATATCCAAGCTGG < 41bp 0.832677765791525 0.469986704976498 0.91793406 0.36672252 prediction 0.665355531583051 Functional Loss - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27021497 chr22:27021500 nonsynonymous SNV 0.792 5 24 hm5C_associated_SNPs_50953 0 0 0 0 2 CRYBA4 chr22:27021445 3'AG 27021445 Downstream 56bp
chr22 27021500 27021500 1 + G T LGG 27021497 + 27021477 27021517 41 GGCAGCAGTACATTCTGGAACGAGGCGAATATCCAAGCTGG GGCAGCAGTACATTCTGGAACGATGCGAATATCCAAGCTGG < 41bp 0.832677765791525 0.469986704976498 0.91793406 0.36672252 prediction 0.665355531583051 Functional Loss - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27021497 chr22:27021500 nonsynonymous SNV 0.792 5 24 hm5C_associated_SNPs_50953 0 0 0 0 2 CRYBA4 chr22:27021586 5'GT 27021586 Upstream 87bp
chr10 30736811 30736811 1 + G T UCEC 30736808 + 30736788 30736828 41 TATTGGTTCTGATTTTATTCCTCGGGGCGCCTTTGGAAAGG TATTGGTTCTGATTTTATTCCTCTGGGCGCCTTTGGAAAGG < 41bp 0.832654448389866 0.482714009472089 0.08855584 0.03949964 prediction 0.665308896779733 Functional Loss - MAP3K8 ENSG00000107968 CDS Human protein_coding chr10:30736808 chr10:30736811 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_50954 0 0 1 0 1 MAP3K8 chr10:30736878 5'GT 30736878 Upstream 68bp
chr1 11766744 11766744 1 + G T LUAD 11766741 + 11766721 11766761 41 AGCAGGGAGCACAAGAGACGCAGGGACAGGTTGAGGCTGCA AGCAGGGAGCACAAGAGACGCAGTGACAGGTTGAGGCTGCA < 41bp 0.832648662451475 0.470944800831411 0.886037 0.29943854 prediction 0.66529732490295 Functional Loss - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11766741 chr1:11766744 nonsynonymous SNV 0.724 2 24 hm5C_associated_SNPs_50955 0 0 0 0 1 DRAXIN chr1:11766766 5'GT 11766766 Upstream 23bp
chr1 196749075 196749075 1 + G T LUAD 196749072 + 196749052 196749092 41 GTTACATGTACGGAGAAAGGCTGGTCTCCTACTCCCAGATG GTTACATGTACGGAGAAAGGCTGTTCTCCTACTCCCAGATG < 41bp 0.832595892586842 0.490453771953361 0.017997473 0.017557949 prediction 0.665191785173684 Functional Loss - CFHR3 ENSG00000116785 CDS Human protein_coding chr1:196749072 chr1:196749075 nonsynonymous SNV 0.004 4 24 hm5C_associated_SNPs_50958 0 0 0 0 1 CFHR3 chr1:196749103 5'GT 196749103 Upstream 29bp
chr15 81561934 81561934 1 + G T UCEC 81561931 + 81561911 81561951 41 AGCTCAGCTCGTGCAGCCATCTGGGGGCCTCCAGGCTTCAG AGCTCAGCTCGTGCAGCCATCTGTGGGCCTCCAGGCTTCAG < 41bp 0.84045596683164 0.507860667728953 0.9485267 0.2972601 prediction 0.665190598205375 Functional Loss - IL16 ENSG00000172349 CDS Human protein_coding chr15:81561931 chr15:81561934 nonsynonymous SNV 0.926 1 24 hm5C_associated_SNPs_50959 0 0 0 0 2 IL16 chr15:81561879 3'AG 81561879 Downstream 56bp
chr15 81561934 81561934 1 + G T UCEC 81561931 + 81561911 81561951 41 AGCTCAGCTCGTGCAGCCATCTGGGGGCCTCCAGGCTTCAG AGCTCAGCTCGTGCAGCCATCTGTGGGCCTCCAGGCTTCAG < 41bp 0.84045596683164 0.507860667728953 0.9485267 0.2972601 prediction 0.665190598205375 Functional Loss - IL16 ENSG00000172349 CDS Human protein_coding chr15:81561931 chr15:81561934 nonsynonymous SNV 0.926 1 24 hm5C_associated_SNPs_50959 0 0 0 0 2 IL16 chr15:81561989 5'GT 81561989 Upstream 56bp
chr14 94568245 94568245 1 + G T HNSC 94568242 + 94568222 94568262 41 GCCGCATCCTCCATAGCAGCCAAGATGATGTCTACAGCAGC GCCGCATCCTCCATAGCAGCCAATATGATGTCTACAGCAGC < 41bp 0.832589376677546 0.470183805732663 0.25540277 0.11596975 prediction 0.665178753355092 Functional Loss - IFI27L1 ENSG00000165948 CDS Human protein_coding chr14:94568242 chr14:94568245 nonsynonymous SNV 0.126 1 24 hm5C_associated_SNPs_50961 0 0 1 0 2 IFI27L1 chr14:94568160 3'AG 94568160 Downstream 86bp
chr14 94568245 94568245 1 + G T HNSC 94568242 + 94568222 94568262 41 GCCGCATCCTCCATAGCAGCCAAGATGATGTCTACAGCAGC GCCGCATCCTCCATAGCAGCCAATATGATGTCTACAGCAGC < 41bp 0.832589376677546 0.470183805732663 0.25540277 0.11596975 prediction 0.665178753355092 Functional Loss - IFI27L1 ENSG00000165948 CDS Human protein_coding chr14:94568242 chr14:94568245 nonsynonymous SNV 0.126 1 24 hm5C_associated_SNPs_50961 0 0 1 0 2 IFI27L1 chr14:94568321 5'GT 94568321 Upstream 77bp
chr16 56672643 56672643 1 + G T THCA 56672640 + 56672620 56672660 41 CTTGGGATCTCCAACCTCACCGCGGCTCGAAATGGACCCCA CTTGGGATCTCCAACCTCACCGCTGCTCGAAATGGACCCCA < 41bp 0.83254608928197 0.48108291588621 0.19051346 0.1410504 prediction 0.665092178563939 Functional Loss - MT1A ENSG00000205362 UTR5 Human protein_coding chr16:56672640 chr16:56672643 . . 0 24 hm5C_associated_SNPs_50964 0 0 0 0 1 MT1A chr16:56672678 5'GT 56672678 Upstream 36bp
chr7 37901657 37901657 1 + G T STAD 37901654 + 37901634 37901674 41 GCAAAATTATCGAAAAGATTCAGGGTGCAAATGCACCGCTT GCAAAATTATCGAAAAGATTCAGTGTGCAAATGCACCGCTT < 41bp 0.832512010555992 0.49310866771411 0.9250362 0.13469094 prediction 0.665024021111983 Functional Loss - NME8 ENSG00000086288 CDS Human protein_coding chr7:37901654 chr7:37901657 nonsynonymous SNV 0.920 3 24 hm5C_associated_SNPs_50967 0 0 0 0 2 NME8 chr7:37901630 3'AG 37901630 Downstream 28bp
chr7 37901657 37901657 1 + G T STAD 37901654 + 37901634 37901674 41 GCAAAATTATCGAAAAGATTCAGGGTGCAAATGCACCGCTT GCAAAATTATCGAAAAGATTCAGTGTGCAAATGCACCGCTT < 41bp 0.832512010555992 0.49310866771411 0.9250362 0.13469094 prediction 0.665024021111983 Functional Loss - NME8 ENSG00000086288 CDS Human protein_coding chr7:37901654 chr7:37901657 nonsynonymous SNV 0.920 3 24 hm5C_associated_SNPs_50967 0 0 0 0 2 NME8 chr7:37901746 5'GT 37901746 Upstream 90bp
chr11 5717876 5717876 1 + G T UCEC 5717873 + 5717853 5717893 41 TTCCGCATAAACGAGGTGGTCAAGGAATGTCAGGTAGGCTC TTCCGCATAAACGAGGTGGTCAATGAATGTCAGGTAGGCTC < 41bp 0.832510395332035 0.477460945310054 0.862687 0.30252874 prediction 0.665020790664069 Functional Loss - TRIM22 ENSG00000132274 CDS Human protein_coding chr11:5717873 chr11:5717876 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_50968 0 0 0 0 1 TRIM22 chr11:5717885 5'GT 5717885 Upstream 10bp
chr9 136522303 136522303 1 - C A HNSC 136522306 - 136522286 136522326 41 TTGCAGTGCATGGAGATGGGCGCGAAGCTGTACAGGGCCTT TTGCAGTGCATGGAGATGGGCGCTAAGCTGTACAGGGCCTT < 41bp 0.845333141614391 0.512857127266813 0.8842373 0.6973977 prediction 0.664952028695155 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136522306 chr9:136522303 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_50970 0 0 0 0 1 DBH chr9:136522249 5'GT 136522249 Upstream 55bp
chr4 728725 728725 1 + A C LUSC 728721 + 728701 728741 41 ACCTGTGCTTTGATGACAGTCTGCAGGAGCTGCCTGGTGAA ACCTGTGCTTTGATGACAGTCTGCCGGAGCTGCCTGGTGAA < 41bp 0.83247595162685 0.463505663832066 0.29266098 0.13833037 prediction 0.664951903253699 Functional Loss - PCGF3 ENSG00000185619 CDS Human protein_coding chr4:728721 chr4:728725 synonymous SNV . 0 25 hm5C_associated_SNPs_50971 0 0 1 0 1 PCGF3 chr4:728720 3'AG 728720 Downstream 6bp
chr19 7593856 7593856 1 + G T UCEC 7593853 + 7593833 7593873 41 ATGAAGATCGGCATCGAGGCCAAGGTGCGTCCTGCCAACAC ATGAAGATCGGCATCGAGGCCAATGTGCGTCCTGCCAACAC < 41bp 0.832469203911298 0.476048835237554 0.7893206 0.21289012 prediction 0.664938407822595 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7593853 chr19:7593856 nonsynonymous SNV 0.951 5 24 hm5C_associated_SNPs_50972 0 0 0 0 1 MCOLN1 chr19:7593856 5'GT 7593856 Upstream 1bp
chr7 37960767 37960767 1 + G T KIRP 37960764 + 37960744 37960784 41 CCTACGACGGGCTCAACCAGCGCGTGCGGGTGCTGGACGAG CCTACGACGGGCTCAACCAGCGCTTGCGGGTGCTGGACGAG < 41bp 0.832439233010285 0.493392082344949 0.6848539 0.33908677 prediction 0.66487846602057 Functional Loss - EPDR1 ENSG00000086289 CDS Human protein_coding chr7:37960764 chr7:37960767 nonsynonymous SNV 0.994 0 24 hm5C_associated_SNPs_50974 0 0 1 0 1 EPDR1 chr7:37960810 5'GT 37960810 Upstream 44bp
chr1 17597382 17597382 1 + G T ESCA 17597379 + 17597359 17597399 41 GGTCTGCCCCTGCAGGATTTCTCGGCATCCCCTATCTTCAC GGTCTGCCCCTGCAGGATTTCTCTGCATCCCCTATCTTCAC < 41bp 0.832365794470152 0.475206958072642 0.19305539 0.12505805 prediction 0.664731588940304 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17597379 chr1:17597382 synonymous SNV . 0 24 hm5C_associated_SNPs_50980 0 0 0 0 2 PADI3 chr1:17597374 3'AG 17597374 Downstream 9bp
chr1 17597382 17597382 1 + G T ESCA 17597379 + 17597359 17597399 41 GGTCTGCCCCTGCAGGATTTCTCGGCATCCCCTATCTTCAC GGTCTGCCCCTGCAGGATTTCTCTGCATCCCCTATCTTCAC < 41bp 0.832365794470152 0.475206958072642 0.19305539 0.12505805 prediction 0.664731588940304 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17597379 chr1:17597382 synonymous SNV . 0 24 hm5C_associated_SNPs_50980 0 0 0 0 2 PADI3 chr1:17597477 5'GT 17597477 Upstream 96bp
chr19 50154183 50154183 1 + G T LUAD 50154180 + 50154160 50154200 41 GCCCGTCACCTCACCTTGGGCACGGGAGACGGGGGCCCTGC GCCCGTCACCTCACCTTGGGCACTGGAGACGGGGGCCCTGC < 41bp 0.832323751778046 0.476599713024118 0.7218919 0.26334205 prediction 0.664647503556093 Functional Loss - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50154180 chr19:50154183 synonymous SNV . 0 24 hm5C_associated_SNPs_50983 0 0 1 0 1 SCAF1 chr19:50154125 3'AG 50154125 Downstream 59bp
chr19 50905324 50905324 1 + G T BLCA 50905321 + 50905301 50905341 41 TGGCCATCAGCCGGGACAGTCGCGGGGGGAGGGAGCTGACT TGGCCATCAGCCGGGACAGTCGCTGGGGGAGGGAGCTGACT < 41bp 0.832308247397092 0.471483052565467 0.92644584 0.74246 prediction 0.664616494794183 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905321 chr19:50905324 nonsynonymous SNV 0.021 2 24 hm5C_associated_SNPs_50986 0 0 1 0 1 POLD1 chr19:50905256 3'AG 50905256 Downstream 69bp
chr2 71303782 71303782 1 + G T SARC 71303779 + 71303759 71303799 41 CCGCTATATCTTCAGGAAGGCTGGGGAGATGCTGGGCAGAC CCGCTATATCTTCAGGAAGGCTGTGGAGATGCTGGGCAGAC < 41bp 0.832264307831012 0.471340252343288 0.7915168 0.2020947 prediction 0.664528615662025 Functional Loss - NAGK ENSG00000124357 CDS Human protein_coding chr2:71303779 chr2:71303782 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_50989 0 0 1 1 2 NAGK chr2:71303734 3'AG 71303734 Downstream 49bp
chr2 71303782 71303782 1 + G T SARC 71303779 + 71303759 71303799 41 CCGCTATATCTTCAGGAAGGCTGGGGAGATGCTGGGCAGAC CCGCTATATCTTCAGGAAGGCTGTGGAGATGCTGGGCAGAC < 41bp 0.832264307831012 0.471340252343288 0.7915168 0.2020947 prediction 0.664528615662025 Functional Loss - NAGK ENSG00000124357 CDS Human protein_coding chr2:71303779 chr2:71303782 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_50989 0 0 1 1 2 NAGK chr2:71303831 5'GT 71303831 Upstream 50bp
chr2 224822298 224822298 1 + G T rs143105143 224822295 + 224822275 224822315 41 GGGGAGTGAAGAAGGGATTCCGCGCCGCCTTCCGCTTCCAG GGGGAGTGAAGAAGGGATTCCGCTCCGCCTTCCGCTTCCAG < 41bp 0.847364450647672 0.51511037957508 0.37385672 0.2226947 prediction 0.664508142145185 Functional Loss - MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224822295 chr2:224822298 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_50992 0 0 0 0 1 MRPL44 chr2:224822368 5'GT 224822368 Upstream 71bp
chr6 167717473 167717473 1 + A C rs34957443 167717469 + 167717449 167717489 41 AACCCATACGAGATGTTCAGCGGGAAAGTGAAGGAGAGAAG AACCCATACGAGATGTTCAGCGGGCAAGTGAAGGAGAGAAG < 41bp 0.85900559664559 0.526775035313282 0.8952362 0.91939545 prediction 0.664461122664615 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167717469 chr6:167717473 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_50995 0 0 0 0 1 UNC93A chr6:167717407 3'AG 167717407 Downstream 67bp
chr19 19638848 19638848 1 + G T LUSC 19638845 + 19638825 19638865 41 TCTGTGTTCCACACAACCCGCTGGGTGCCCCCCTTGATCGG TCTGTGTTCCACACAACCCGCTGTGTGCCCCCCTTGATCGG < 41bp 0.865652144747154 0.533437890404059 0.75207937 0.25774115 prediction 0.664428508686191 Functional Loss - NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19638845 chr19:19638848 nonsynonymous SNV 0.437 4 24 hm5C_associated_SNPs_50996 0 0 1 0 2 NDUFA13 chr19:19638816 3'AG 19638816 Downstream 33bp
chr19 19638848 19638848 1 + G T LUSC 19638845 + 19638825 19638865 41 TCTGTGTTCCACACAACCCGCTGGGTGCCCCCCTTGATCGG TCTGTGTTCCACACAACCCGCTGTGTGCCCCCCTTGATCGG < 41bp 0.865652144747154 0.533437890404059 0.75207937 0.25774115 prediction 0.664428508686191 Functional Loss - NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19638845 chr19:19638848 nonsynonymous SNV 0.437 4 24 hm5C_associated_SNPs_50996 0 0 1 0 2 NDUFA13 chr19:19638925 5'GT 19638925 Upstream 78bp
chr3 12544841 12544841 1 + A C rs142211875 12544837 + 12544817 12544857 41 AGAGTACAGTGCGCAGAATCCTCAAGGATTACACGAAACCG AGAGTACAGTGCGCAGAATCCTCACGGATTACACGAAACCG < 41bp 0.832151407484074 0.435955388825277 0.040753186 0.04060313 prediction 0.664302814968148 Functional Loss - TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12544837 chr3:12544841 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_50997 3 0 0 0 1 TSEN2 chr3:12544761 3'AG 12544761 Downstream 81bp
chr3 45077068 45077068 1 + G T UCEC 45077065 + 45077045 45077085 41 AAATGCTTTCTGGCCTTCACCCAGACGAAGACCTTCCACGA AAATGCTTTCTGGCCTTCACCCATACGAAGACCTTCCACGA < 41bp 0.832150702645782 0.487790752030975 0.17941442 0.020527005 prediction 0.664301405291565 Functional Loss - CLEC3B ENSG00000163815 CDS Human protein_coding chr3:45077065 chr3:45077068 nonsynonymous SNV 0.379 0 24 hm5C_associated_SNPs_50998 0 0 0 0 1 CLEC3B chr3:45077016 3'AG 45077016 Downstream 53bp
chr16 15528552 15528552 1 + G T UCEC 15528549 + 15528529 15528569 41 TTGTCCACCCATCTGGAAGCCGAGAAGCCTCTGAGGCGCTA TTGTCCACCCATCTGGAAGCCGATAAGCCTCTGAGGCGCTA < 41bp 0.83514818179336 0.503020832986798 0.5578094 0.24058002 prediction 0.664254697613126 Functional Loss - C16orf45 ENSG00000166780 CDS Human protein_coding chr16:15528549 chr16:15528552 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_50999 0 0 0 0 1 C16orf45 chr16:15528616 5'GT 15528616 Upstream 65bp
chr11 26538464 26538464 1 + A C SKCM 26538460 + 26538440 26538480 41 TATGCAGAGAGGCTGAATATCAGGATGCCCTTCAGGTACTT TATGCAGAGAGGCTGAATATCAGGCTGCCCTTCAGGTACTT < 41bp 0.839384205999371 0.507261154593415 0.85415184 0.8643805 prediction 0.664246102811912 Functional Loss - ANO3 ENSG00000134343 CDS Human protein_coding chr11:26538460 chr11:26538464 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_51000 0 0 0 0 2 ANO3 chr11:26538374 3'AG 26538374 Downstream 91bp
chr11 26538464 26538464 1 + A C SKCM 26538460 + 26538440 26538480 41 TATGCAGAGAGGCTGAATATCAGGATGCCCTTCAGGTACTT TATGCAGAGAGGCTGAATATCAGGCTGCCCTTCAGGTACTT < 41bp 0.839384205999371 0.507261154593415 0.85415184 0.8643805 prediction 0.664246102811912 Functional Loss - ANO3 ENSG00000134343 CDS Human protein_coding chr11:26538460 chr11:26538464 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_51000 0 0 0 0 2 ANO3 chr11:26538474 5'GT 26538474 Upstream 11bp
chr1 207010134 207010134 1 + G T UCEC 207010131 + 207010111 207010151 41 ACCATATAGAAGAGAGTTTCCAAGAAATCAAAAGAGCCATC ACCATATAGAAGAGAGTTTCCAATAAATCAAAAGAGCCATC < 41bp 0.832117677754651 0.490464668161363 0.2143774 0.0479877 prediction 0.664235355509302 Functional Loss - IL19 ENSG00000142224 CDS Human protein_coding chr1:207010131 chr1:207010134 stopgain 0.998 0 24 hm5C_associated_SNPs_51001 0 0 0 0 1 IL19 chr1:207010151 5'GT 207010151 Upstream 18bp
chr1 3680308 3680308 1 + G T UCEC 3680305 + 3680285 3680325 41 TACAACAACAAGTGGATTTCCAAGAAACCCAGCTGCGAAAG TACAACAACAAGTGGATTTCCAATAAACCCAGCTGCGAAAG < 41bp 0.858113778923676 0.525998802925637 0.36131912 0.122773826 prediction 0.664229951996077 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3680305 chr1:3680308 stopgain 0.044 0 24 hm5C_associated_SNPs_51002 0 0 0 0 2 CCDC27 chr1:3680270 3'AG 3680270 Downstream 39bp
chr1 3680308 3680308 1 + G T UCEC 3680305 + 3680285 3680325 41 TACAACAACAAGTGGATTTCCAAGAAACCCAGCTGCGAAAG TACAACAACAAGTGGATTTCCAATAAACCCAGCTGCGAAAG < 41bp 0.858113778923676 0.525998802925637 0.36131912 0.122773826 prediction 0.664229951996077 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3680305 chr1:3680308 stopgain 0.044 0 24 hm5C_associated_SNPs_51002 0 0 0 0 2 CCDC27 chr1:3680400 5'GT 3680400 Upstream 93bp
chr16 57054865 57054865 1 + G T CESC 57054862 + 57054842 57054882 41 TTCATTGTGTGTGCATGCAGCTGGAGGTGCCTCTGGACCTG TTCATTGTGTGTGCATGCAGCTGTAGGTGCCTCTGGACCTG < 41bp 0.838460417338925 0.506391175597654 0.5533135 0.3649559 prediction 0.664138483482543 Functional Loss - NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57054862 chr16:57054865 stopgain 0.966 0 24 hm5C_associated_SNPs_51006 0 0 0 0 1 NLRC5 chr16:57054919 5'GT 57054919 Upstream 55bp
chrX 119509292 119509292 1 + G T BLCA 119509289 + 119509269 119509309 41 CCCCGGGGCAGTACTTCATCCAAGATGGCAATGAGGATGAG CCCCGGGGCAGTACTTCATCCAATATGGCAATGAGGATGAG < 41bp 0.832030239468585 0.48431063493961 0.14001039 0.03608367 prediction 0.66406047893717 Functional Loss - ATP1B4 ENSG00000101892 CDS Human protein_coding chrX:119509289 chrX:119509292 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_51008 0 0 0 0 1 ATP1B4 chrX:119509227 3'AG 119509227 Downstream 66bp
chr13 96205183 96205183 1 + G T SARC 96205180 + 96205160 96205200 41 GGCGTGCGTTACCGACTCCACGGGCGTCTCCAACTGCAAGG GGCGTGCGTTACCGACTCCACGGTCGTCTCCAACTGCAAGG < 41bp 0.832006555497953 0.486512420489579 0.18421721 0.017100602 prediction 0.664013110995905 Functional Loss - CLDN10 ENSG00000134873 CDS Human protein_coding chr13:96205180 chr13:96205183 nonsynonymous SNV 0.954 5 24 hm5C_associated_SNPs_51011 0 0 0 0 1 CLDN10 chr13:96205227 5'GT 96205227 Upstream 45bp
chr5 140076836 140076836 1 + G T SARC 140076833 + 140076813 140076853 41 TGCTGCTGCAGACCCCAACTCAGGCTGGGGAGGAGCCCCTG TGCTGCTGCAGACCCCAACTCAGTCTGGGGAGGAGCCCCTG < 41bp 0.831943956003042 0.469586572668436 0.7921563 0.18645102 prediction 0.663887912006083 Functional Loss - HARS2 ENSG00000112855 CDS Human protein_coding chr5:140076833 chr5:140076836 nonsynonymous SNV 0.940 0 24 hm5C_associated_SNPs_51016 0 0 1 0 1 HARS2 chr5:140076749 3'AG 140076749 Downstream 88bp
chr11 126146398 126146398 1 + G T SARC 126146395 + 126146375 126146415 41 AAGGATTAGGTAGCAACTACCTAGGTGGTCGTAGCCCCACT AAGGATTAGGTAGCAACTACCTATGTGGTCGTAGCCCCACT < 41bp 0.83188953212676 0.478740259363653 0.79703915 0.19564775 prediction 0.66377906425352 Functional Loss - FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126146395 chr11:126146398 nonsynonymous SNV 0.990 2 24 hm5C_associated_SNPs_51019 0 0 1 0 1 FOXRED1 chr11:126146418 5'GT 126146418 Upstream 21bp
chr8 66605988 66605988 1 + G T UCEC 66605985 + 66605965 66606005 41 AGAAGAAGGAGAGTGTTCAGCAAGACTAAGGTTAGTTTGGA AGAAGAAGGAGAGTGTTCAGCAATACTAAGGTTAGTTTGGA < 41bp 0.831817659316235 0.494871770518232 0.4304084 0.30510676 prediction 0.663635318632471 Functional Loss - MTFR1 ENSG00000066855 CDS Human protein_coding chr8:66605985 chr8:66605988 nonsynonymous SNV 0.425 3 24 hm5C_associated_SNPs_51021 0 0 1 0 1 MTFR1 chr8:66605994 5'GT 66605994 Upstream 7bp
chr15 57924714 57924714 1 + A C rs147301839 57924710 + 57924690 57924730 41 ACAGCCAGTATGAGGAGAAGCTGCAGGAAGAACAGAGGAAG ACAGCCAGTATGAGGAGAAGCTGCCGGAAGAACAGAGGAAG < 41bp 0.831813511971505 0.448441565671651 0.33506382 0.20104864 prediction 0.66362702394301 Functional Loss - GCOM1;MYZAP ENSG00000137878;ENSG00000263155 CDS Human other chr15:57924710 chr15:57924714 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_51022 0 1 0 0 2 GCOM1;MYZAP chr15:57924632 3'AG 57924632 Downstream 83bp
chr15 57924714 57924714 1 + A C rs147301839 57924710 + 57924690 57924730 41 ACAGCCAGTATGAGGAGAAGCTGCAGGAAGAACAGAGGAAG ACAGCCAGTATGAGGAGAAGCTGCCGGAAGAACAGAGGAAG < 41bp 0.831813511971505 0.448441565671651 0.33506382 0.20104864 prediction 0.66362702394301 Functional Loss - GCOM1;MYZAP ENSG00000137878;ENSG00000263155 CDS Human other chr15:57924710 chr15:57924714 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_51022 0 1 0 0 2 GCOM1;MYZAP chr15:57924757 5'GT 57924757 Upstream 44bp
chr12 73046155 73046155 1 + A C SKCM 73046151 + 73046131 73046171 41 ACTGTACAGGAGTGTCACTACTGGATGAGGATGTCTGGGAA ACTGTACAGGAGTGTCACTACTGGCTGAGGATGTCTGGGAA < 41bp 0.831800791611598 0.471302801402895 0.21656144 0.13639227 prediction 0.663601583223197 Functional Loss - TRHDE ENSG00000072657 CDS Human protein_coding chr12:73046151 chr12:73046155 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_51024 0 0 0 0 1 TRHDE chr12:73046102 3'AG 73046102 Downstream 54bp
chr3 10916719 10916719 1 + G T LUSC 10916716 + 10916696 10916736 41 GATACGAGGGGTCACGTTGCCCGGGGCCTCAGAGGGCATCA GATACGAGGGGTCACGTTGCCCGTGGCCTCAGAGGGCATCA < 41bp 0.851133560179591 0.519348685574569 0.89077604 0.13239759 prediction 0.663569749210043 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10916716 chr3:10916719 nonsynonymous SNV 0.559 5 24 hm5C_associated_SNPs_51025 0 0 1 0 2 SLC6A11 chr3:10916646 3'AG 10916646 Downstream 74bp
chr3 10916719 10916719 1 + G T LUSC 10916716 + 10916696 10916736 41 GATACGAGGGGTCACGTTGCCCGGGGCCTCAGAGGGCATCA GATACGAGGGGTCACGTTGCCCGTGGCCTCAGAGGGCATCA < 41bp 0.851133560179591 0.519348685574569 0.89077604 0.13239759 prediction 0.663569749210043 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10916716 chr3:10916719 nonsynonymous SNV 0.559 5 24 hm5C_associated_SNPs_51025 0 0 1 0 2 SLC6A11 chr3:10916780 5'GT 10916780 Upstream 62bp
chr10 105046867 105046867 1 + G T READ 105046864 + 105046844 105046884 41 CACGCCACCTTCGGGAATACCAGGACTTGCTCAATGTCAAA CACGCCACCTTCGGGAATACCAGTACTTGCTCAATGTCAAA < 41bp 0.831774848610158 0.470643963175354 0.8978083 0.7587888 prediction 0.663549697220316 Functional Loss - INA ENSG00000148798 CDS Human protein_coding chr10:105046864 chr10:105046867 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_51026 0 0 0 0 2 INA chr10:105046792 3'AG 105046792 Downstream 76bp
chr10 105046867 105046867 1 + G T READ 105046864 + 105046844 105046884 41 CACGCCACCTTCGGGAATACCAGGACTTGCTCAATGTCAAA CACGCCACCTTCGGGAATACCAGTACTTGCTCAATGTCAAA < 41bp 0.831774848610158 0.470643963175354 0.8978083 0.7587888 prediction 0.663549697220316 Functional Loss - INA ENSG00000148798 CDS Human protein_coding chr10:105046864 chr10:105046867 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_51026 0 0 0 0 2 INA chr10:105046916 5'GT 105046916 Upstream 50bp
chr19 41903836 41903836 1 + G T BLCA 41903833 + 41903813 41903853 41 GCCTGGGGCTCGGGGACTGGCTAGATCTGTGAGTACCTGGG GCCTGGGGCTCGGGGACTGGCTATATCTGTGAGTACCTGGG < 41bp 0.845777294713961 0.514035121355146 0.8889307 0.8961381 prediction 0.663484346717629 Functional Loss - BCKDHA ENSG00000248098 CDS Human protein_coding chr19:41903833 chr19:41903836 nonsynonymous SNV 0.985 1 24 hm5C_associated_SNPs_51028 0 0 1 0 1 BCKDHA chr19:41903840 5'GT 41903840 Upstream 5bp
chr2 219294587 219294587 1 + G T UCEC 219294584 + 219294564 219294604 41 GACTCTAGGACTGTTACATCCTGGACCAGGGGGGCCTGAAG GACTCTAGGACTGTTACATCCTGTACCAGGGGGGCCTGAAG < 41bp 0.831736138591121 0.469423115875992 0.07891658 0.023848772 prediction 0.663472277182242 Functional Loss - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219294584 chr2:219294587 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51029 0 0 1 0 2 VIL1 chr2:219294572 3'AG 219294572 Downstream 16bp
chr2 219294587 219294587 1 + G T UCEC 219294584 + 219294564 219294604 41 GACTCTAGGACTGTTACATCCTGGACCAGGGGGGCCTGAAG GACTCTAGGACTGTTACATCCTGTACCAGGGGGGCCTGAAG < 41bp 0.831736138591121 0.469423115875992 0.07891658 0.023848772 prediction 0.663472277182242 Functional Loss - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219294584 chr2:219294587 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51029 0 0 1 0 2 VIL1 chr2:219294670 5'GT 219294670 Upstream 84bp
chr8 69104676 69104676 1 + G T SARC 69104673 + 69104653 69104693 41 AAACACAGCTTGCAGTGCTTCTGGGGTTGGACTGCTGTCAG AAACACAGCTTGCAGTGCTTCTGTGGTTGGACTGCTGTCAG < 41bp 0.83168911591952 0.492836833199848 0.6763629 0.06847215 prediction 0.66337823183904 Functional Loss - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69104673 chr8:69104676 nonsynonymous SNV 0.666 4 24 hm5C_associated_SNPs_51031 0 0 0 0 1 PREX2 chr8:69104760 5'GT 69104760 Upstream 85bp
chr12 96640729 96640729 1 + G T UCEC 96640726 + 96640706 96640746 41 TTGTATTTGCAGAACATCATCAAGAAGGTGATCGGGCAGAA TTGTATTTGCAGAACATCATCAATAAGGTGATCGGGCAGAA < 41bp 0.831674261148661 0.48809568481537 0.46612707 0.066551 prediction 0.663348522297323 Functional Loss - ELK3 ENSG00000111145 CDS Human protein_coding chr12:96640726 chr12:96640729 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51032 0 0 0 0 1 ELK3 chr12:96640718 3'AG 96640718 Downstream 12bp
chr16 68330713 68330713 1 + G T STAD 68330710 + 68330690 68330730 41 CATTGTTTATTCGGAATGTCCTGGGTGAGCTTCTCTGTGCC CATTGTTTATTCGGAATGTCCTGTGTGAGCTTCTCTGTGCC < 41bp 0.831665020776519 0.475771986983475 0.9014658 0.19264549 prediction 0.663330041553039 Functional Loss - SLC7A6 ENSG00000103064 CDS Human protein_coding chr16:68330710 chr16:68330713 nonsynonymous SNV 0.974 1 24 hm5C_associated_SNPs_51033 0 0 1 0 1 SLC7A6 chr16:68330713 5'GT 68330713 Upstream 1bp
chr3 35770879 35770879 1 + G T BLCA 35770876 + 35770856 35770896 41 CCAGAGCACACCCCTAGTCTCAGGTGTGGCAGCTGGCTCTC CCAGAGCACACCCCTAGTCTCAGTTGTGGCAGCTGGCTCTC < 41bp 0.844773469818623 0.513135270123136 0.95233583 0.39598948 prediction 0.663276399390975 Functional Loss - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35770876 chr3:35770879 nonsynonymous SNV 0.011 1 24 hm5C_associated_SNPs_51036 0 0 0 0 1 ARPP21 chr3:35770795 3'AG 35770795 Downstream 85bp
chr11 63668456 63668456 1 + G T THCA 63668453 + 63668433 63668473 41 GATGGTGTCCATGGGTTATACACGGGAAGAGATCCAGGACT GATGGTGTCCATGGGTTATACACTGGAAGAGATCCAGGACT < 41bp 0.831616924643418 0.464300110454895 0.19076923 0.032435864 prediction 0.663233849286837 Functional Loss - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63668453 chr11:63668456 nonsynonymous SNV 0.675 0 24 hm5C_associated_SNPs_51038 0 0 1 0 2 MARK2 chr11:63668429 3'AG 63668429 Downstream 28bp
chr11 63668456 63668456 1 + G T THCA 63668453 + 63668433 63668473 41 GATGGTGTCCATGGGTTATACACGGGAAGAGATCCAGGACT GATGGTGTCCATGGGTTATACACTGGAAGAGATCCAGGACT < 41bp 0.831616924643418 0.464300110454895 0.19076923 0.032435864 prediction 0.663233849286837 Functional Loss - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63668453 chr11:63668456 nonsynonymous SNV 0.675 0 24 hm5C_associated_SNPs_51038 0 0 1 0 2 MARK2 chr11:63668541 5'GT 63668541 Upstream 86bp
chr1 221055673 221055673 1 + G T LUAD 221055670 + 221055650 221055690 41 GAAAGCAGCTGGCGGCGATGCTGGGCCTCACGGACGCACAG GAAAGCAGCTGGCGGCGATGCTGTGCCTCACGGACGCACAG < 41bp 0.831603698535596 0.469646670668543 0.8861573 0.2548648 prediction 0.663207397071192 Functional Loss - HLX ENSG00000136630 CDS Human protein_coding chr1:221055670 chr1:221055673 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_51039 0 0 1 0 1 HLX chr1:221055690 5'GT 221055690 Upstream 18bp
chr9 131671515 131671515 1 + A C BRCA 131671511 + 131671491 131671531 41 ACTGCCGCAAGCTGCGCTACCTGGACCTCAGCCACAACAAC ACTGCCGCAAGCTGCGCTACCTGGCCCTCAGCCACAACAAC < 41bp 0.831588634901744 0.457900213549746 0.1839731 0.14520097 prediction 0.663177269803489 Functional Loss - LRRC8A ENSG00000136802 CDS Human protein_coding chr9:131671511 chr9:131671515 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_51040 0 0 1 0 1 LRRC8A chr9:131671600 5'GT 131671600 Upstream 86bp
chr8 124810341 124810341 1 + G T LUAD 124810338 + 124810318 124810358 41 ATCATAACTCAGGTTTTCCTCTGGATCTCTTACGCTGTGAA ATCATAACTCAGGTTTTCCTCTGTATCTCTTACGCTGTGAA < 41bp 0.842642807408552 0.511074425613643 0.8376013 0.34673452 prediction 0.663136763589818 Functional Loss - FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124810338 chr8:124810341 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51041 0 0 0 0 1 FAM91A1 chr8:124810330 3'AG 124810330 Downstream 12bp
chr12 56626611 56626611 1 + G T SARC 56626608 + 56626588 56626628 41 TCGGGCCTGGACCTCCTTCACAGGCTTCTGTTGCTGGACCA TCGGGCCTGGACCTCCTTCACAGTCTTCTGTTGCTGGACCA < 41bp 0.873343057487188 0.54178631667009 0.86703837 0.37740618 prediction 0.663113481634197 Functional Loss - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56626608 chr12:56626611 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51042 0 0 0 0 1 SLC39A5 chr12:56626656 5'GT 56626656 Upstream 46bp
chr16 1748864 1748864 1 + A C UCEC 1748860 + 1748840 1748880 41 GCCAGGTGAGAAAGGCAGCGCCAGAAAAGCAGGCCCCGCCA GCCAGGTGAGAAAGGCAGCGCCAGCAAAGCAGGCCCCGCCA < 41bp 0.85383878983272 0.522306228934576 0.86306727 0.42038777 prediction 0.66306512179629 Functional Loss - JPT2 ENSG00000206053 CDS Human protein_coding chr16:1748860 chr16:1748864 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_51043 0 0 1 0 1 JPT2 chr16:1748812 3'AG 1748812 Downstream 53bp
chr12 27623608 27623608 1 + A C rs555243671 27623604 + 27623584 27623624 41 ACCTAAATAACAAAATGTCTCTGCAGATGAAGATGGACTGC ACCTAAATAACAAAATGTCTCTGCCGATGAAGATGGACTGC < 41bp 0.83151591825333 0.454828426382129 0.20268789 0.21183452 prediction 0.663031836506661 Functional Loss - SMCO2 ENSG00000165935 CDS Human protein_coding chr12:27623604 chr12:27623608 nonsynonymous SNV 0.085 0 25 hm5C_associated_SNPs_51044 0 0 0 0 2 SMCO2 chr12:27623555 3'AG 27623555 Downstream 54bp
chr12 27623608 27623608 1 + A C rs555243671 27623604 + 27623584 27623624 41 ACCTAAATAACAAAATGTCTCTGCAGATGAAGATGGACTGC ACCTAAATAACAAAATGTCTCTGCCGATGAAGATGGACTGC < 41bp 0.83151591825333 0.454828426382129 0.20268789 0.21183452 prediction 0.663031836506661 Functional Loss - SMCO2 ENSG00000165935 CDS Human protein_coding chr12:27623604 chr12:27623608 nonsynonymous SNV 0.085 0 25 hm5C_associated_SNPs_51044 0 0 0 0 2 SMCO2 chr12:27623698 5'GT 27623698 Upstream 91bp
chr11 124564247 124564247 1 + A C SKCM 124564243 + 124564223 124564263 41 AAAGAAGAGGTTGCTGCTGTCAAAATCCAAGCTGCCTTCCG AAAGAAGAGGTTGCTGCTGTCAAACTCCAAGCTGCCTTCCG < 41bp 0.831506790738452 0.477765731833779 0.37986672 0.13449034 prediction 0.663013581476904 Functional Loss - SPA17 ENSG00000064199 CDS Human protein_coding chr11:124564243 chr11:124564247 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_51046 0 0 0 0 1 SPA17 chr11:124564199 3'AG 124564199 Downstream 49bp
chr1 114440545 114440545 1 - C A UCEC 114440548 - 114440528 114440568 41 TAGTGGTGGTGCAGACTTTCCGAGACCTGGTTTGGTTGTGT TAGTGGTGGTGCAGACTTTCCGATACCTGGTTTGGTTGTGT < 41bp 0.855502613762629 0.524045243745337 0.866278 0.26933885 prediction 0.662914740034584 Functional Loss - AP4B1 ENSG00000134262 CDS Human protein_coding chr1:114440548 chr1:114440545 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51048 0 0 0 0 2 AP4B1 chr1:114440462 5'GT 114440462 Upstream 84bp
chr1 114440545 114440545 1 - C A UCEC 114440548 - 114440528 114440568 41 TAGTGGTGGTGCAGACTTTCCGAGACCTGGTTTGGTTGTGT TAGTGGTGGTGCAGACTTTCCGATACCTGGTTTGGTTGTGT < 41bp 0.855502613762629 0.524045243745337 0.866278 0.26933885 prediction 0.662914740034584 Functional Loss - AP4B1 ENSG00000134262 CDS Human protein_coding chr1:114440548 chr1:114440545 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51048 0 0 0 0 2 AP4B1 chr1:114440565 3'AG 114440565 Downstream 21bp
chr16 67919930 67919930 1 + A C rs73593844 67919926 + 67919906 67919946 41 CTCAGGTCCTGTCAGGCTGTCCGGAGGAGGCAGCTGCAGTG CTCAGGTCCTGTCAGGCTGTCCGGCGGAGGCAGCTGCAGTG < 41bp 0.861180067445106 0.529727943786547 0.8550463 0.7486088 prediction 0.662904247317117 Functional Loss - NRN1L ENSG00000188038 CDS Human protein_coding chr16:67919926 chr16:67919930 nonsynonymous SNV 0.983 1 25 hm5C_associated_SNPs_51049 0 0 0 0 1 NRN1L chr16:67919877 3'AG 67919877 Downstream 54bp
chr9 131479176 131479176 1 + G T UCEC 131479173 + 131479153 131479193 41 GACCTCATGATGCAGATCCACGAGGATGTCTTCCCCGAGCC GACCTCATGATGCAGATCCACGATGATGTCTTCCCCGAGCC < 41bp 0.831417559382358 0.46259474556763 0.87973773 0.2642972 prediction 0.662835118764716 Functional Loss - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131479173 chr9:131479176 nonsynonymous SNV 0.972 0 24 hm5C_associated_SNPs_51050 0 0 1 0 1 PKN3 chr9:131479202 5'GT 131479202 Upstream 27bp
chr11 111959653 111959653 1 + G T ESCA 111959650 + 111959630 111959670 41 GGGTTGTCAGTGTTTTGCTCCTGGGTCTGCTTCCGGCTGCT GGGTTGTCAGTGTTTTGCTCCTGTGTCTGCTTCCGGCTGCT < 41bp 0.831417088259112 0.476727313555084 0.850646 0.18500644 prediction 0.662834176518224 Functional Loss - SDHD ENSG00000204370;ENSG00000255292 CDS Human other chr11:111959650 chr11:111959653 nonsynonymous SNV 0.953 5 24 hm5C_associated_SNPs_51051 0 0 0 0 1 SDHD chr11:111959591 3'AG 111959591 Downstream 63bp
chr9 101594148 101594148 1 + A C LUAD 101594144 + 101594124 101594164 41 CTGGGGAACTCCGGGGAGCCCCAGATCGGCGGTTTCGACTG CTGGGGAACTCCGGGGAGCCCCAGCTCGGCGGTTTCGACTG < 41bp 0.878800157032544 0.547407801565006 0.36893928 0.14517954 prediction 0.662784710935076 Functional Loss - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101594144 chr9:101594148 nonsynonymous SNV 0.972 1 25 hm5C_associated_SNPs_51053 0 0 1 0 2 GALNT12 chr9:101594054 3'AG 101594054 Downstream 95bp
chr9 101594148 101594148 1 + A C LUAD 101594144 + 101594124 101594164 41 CTGGGGAACTCCGGGGAGCCCCAGATCGGCGGTTTCGACTG CTGGGGAACTCCGGGGAGCCCCAGCTCGGCGGTTTCGACTG < 41bp 0.878800157032544 0.547407801565006 0.36893928 0.14517954 prediction 0.662784710935076 Functional Loss - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101594144 chr9:101594148 nonsynonymous SNV 0.972 1 25 hm5C_associated_SNPs_51053 0 0 1 0 2 GALNT12 chr9:101594239 5'GT 101594239 Upstream 92bp
chr19 17598009 17598009 1 + G T BLCA 17598006 + 17597986 17598026 41 TGGCCGAAGTGAGCGGGCATCTGGGGAAAAGTTTGATCAAG TGGCCGAAGTGAGCGGGCATCTGTGGAAAAGTTTGATCAAG < 41bp 0.831343100368999 0.482714034218202 0.86962384 0.35000563 prediction 0.662686200737997 Functional Loss - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17598006 chr19:17598009 nonsynonymous SNV 0.981 4 24 hm5C_associated_SNPs_51057 0 0 0 0 1 SLC27A1 chr19:17597983 3'AG 17597983 Downstream 27bp
chr3 49750049 49750049 1 + G T COAD 49750046 + 49750026 49750066 41 ATCAACAGCTACAGTGCTCTCAAGAATTACTTTGGTCCCGT ATCAACAGCTACAGTGCTCTCAATAATTACTTTGGTCCCGT < 41bp 0.831330275037446 0.481984418462888 0.85605454 0.251476 prediction 0.662660550074893 Functional Loss - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49750046 chr3:49750049 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51059 0 0 1 0 1 RNF123 chr3:49750089 5'GT 49750089 Upstream 41bp
chr16 614287 614287 1 + G T UCEC 614284 + 614264 614304 41 GGGGAGCTGGAGCGGGCAGCCCAGAGTGACCCCAGGAGGAG GGGGAGCTGGAGCGGGCAGCCCATAGTGACCCCAGGAGGAG < 41bp 0.847217529559336 0.515910240320189 0.33860707 0.31037748 prediction 0.662614578478294 Functional Loss - PRR35 ENSG00000161992 CDS Human protein_coding chr16:614284 chr16:614287 nonsynonymous SNV 0.008 2 24 hm5C_associated_SNPs_51060 0 0 0 0 1 PRR35 chr16:614376 5'GT 614376 Upstream 90bp
chr10 118215325 118215325 1 + G T LUSC 118215322 + 118215302 118215342 41 GGAAGCTGGGTCAAGGATACCAGGCCTTGGAAGAATAACTG GGAAGCTGGGTCAAGGATACCAGTCCTTGGAAGAATAACTG < 41bp 0.831296812009855 0.478081075085708 0.28072703 0.13277096 prediction 0.66259362401971 Functional Loss - PNLIPRP3 ENSG00000203837 CDS Human protein_coding chr10:118215322 chr10:118215325 nonsynonymous SNV 0.987 3 24 hm5C_associated_SNPs_51062 0 0 0 0 2 PNLIPRP3 chr10:118215234 3'AG 118215234 Downstream 92bp
chr10 118215325 118215325 1 + G T LUSC 118215322 + 118215302 118215342 41 GGAAGCTGGGTCAAGGATACCAGGCCTTGGAAGAATAACTG GGAAGCTGGGTCAAGGATACCAGTCCTTGGAAGAATAACTG < 41bp 0.831296812009855 0.478081075085708 0.28072703 0.13277096 prediction 0.66259362401971 Functional Loss - PNLIPRP3 ENSG00000203837 CDS Human protein_coding chr10:118215322 chr10:118215325 nonsynonymous SNV 0.987 3 24 hm5C_associated_SNPs_51062 0 0 0 0 2 PNLIPRP3 chr10:118215342 5'GT 118215342 Upstream 18bp
chr22 44532347 44532347 1 + A C rs201831464 44532343 + 44532323 44532363 41 TATTTTGGGGTTTTCAGAAACGGGAAGGCCTGCTGCATTCC TATTTTGGGGTTTTCAGAAACGGGCAGGCCTGCTGCATTCC < 41bp 0.875239846216703 0.543948159758139 0.9410926 0.8587247 prediction 0.662583372917129 Functional Loss - PARVB ENSG00000188677 CDS Human protein_coding chr22:44532343 chr22:44532347 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_51063 0 0 1 0 1 PARVB chr22:44532340 3'AG 44532340 Downstream 8bp
chr5 5242232 5242232 1 + A C UCEC 5242228 + 5242208 5242248 41 TCCATGCCTCGCTTGGGGACCGAGAAGCAGCCCCCTGCCCA TCCATGCCTCGCTTGGGGACCGAGCAGCAGCCCCCTGCCCA < 41bp 0.831289032114821 0.460713608744407 0.94105697 0.90688634 prediction 0.662578064229643 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5242228 chr5:5242232 nonsynonymous SNV 0.066 0 25 hm5C_associated_SNPs_51064 0 0 0 0 2 ADAMTS16 chr5:5242166 3'AG 5242166 Downstream 67bp
chr5 5242232 5242232 1 + A C UCEC 5242228 + 5242208 5242248 41 TCCATGCCTCGCTTGGGGACCGAGAAGCAGCCCCCTGCCCA TCCATGCCTCGCTTGGGGACCGAGCAGCAGCCCCCTGCCCA < 41bp 0.831289032114821 0.460713608744407 0.94105697 0.90688634 prediction 0.662578064229643 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5242228 chr5:5242232 nonsynonymous SNV 0.066 0 25 hm5C_associated_SNPs_51064 0 0 0 0 2 ADAMTS16 chr5:5242304 5'GT 5242304 Upstream 73bp
chr1 74905217 74905217 1 + G T PRAD 74905214 + 74905194 74905234 41 TGAGGTGTTCACGCAGTGCACTCGGTACACCATCAAAGCAG TGAGGTGTTCACGCAGTGCACTCTGTACACCATCAAAGCAG < 41bp 0.831284276219983 0.494880941889337 0.25992066 0.086990654 prediction 0.662568552439967 Functional Loss - FPGT-TNNI3K;TNNI3K ENSG00000116783;ENSG00000259030 CDS Human other chr1:74905214 chr1:74905217 nonsynonymous SNV 0.816 2 24 hm5C_associated_SNPs_51065 0 0 0 0 2 FPGT-TNNI3K;TNNI3K chr1:74905174 3'AG 74905174 Downstream 44bp
chr1 74905217 74905217 1 + G T PRAD 74905214 + 74905194 74905234 41 TGAGGTGTTCACGCAGTGCACTCGGTACACCATCAAAGCAG TGAGGTGTTCACGCAGTGCACTCTGTACACCATCAAAGCAG < 41bp 0.831284276219983 0.494880941889337 0.25992066 0.086990654 prediction 0.662568552439967 Functional Loss - FPGT-TNNI3K;TNNI3K ENSG00000116783;ENSG00000259030 CDS Human other chr1:74905214 chr1:74905217 nonsynonymous SNV 0.816 2 24 hm5C_associated_SNPs_51065 0 0 0 0 2 FPGT-TNNI3K;TNNI3K chr1:74905306 5'GT 74905306 Upstream 90bp
chr16 67915267 67915267 1 + G T STAD 67915264 + 67915244 67915284 41 CCTGCCAAGGACTGGAAGACCAAGGGATCCCCTCGAACCTC CCTGCCAAGGACTGGAAGACCAATGGATCCCCTCGAACCTC < 41bp 0.874402538062533 0.543175246814683 0.9375378 0.6708941 prediction 0.6624545824957 Functional Loss - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67915264 chr16:67915267 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51067 0 0 1 0 2 EDC4 chr16:67915168 3'AG 67915168 Downstream 100bp
chr16 67915267 67915267 1 + G T STAD 67915264 + 67915244 67915284 41 CCTGCCAAGGACTGGAAGACCAAGGGATCCCCTCGAACCTC CCTGCCAAGGACTGGAAGACCAATGGATCCCCTCGAACCTC < 41bp 0.874402538062533 0.543175246814683 0.9375378 0.6708941 prediction 0.6624545824957 Functional Loss - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67915264 chr16:67915267 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51067 0 0 1 0 2 EDC4 chr16:67915320 5'GT 67915320 Upstream 54bp
chr16 28912188 28912188 1 + A C UCEC 28912184 + 28912164 28912204 41 TCGCCCGTGTGGAGCCCTCGCACAAGTCCAAGATTGTGGAG TCGCCCGTGTGGAGCCCTCGCACACGTCCAAGATTGTGGAG < 41bp 0.831201080683539 0.440940293619592 0.09102476 0.08061582 prediction 0.662402161367079 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28912184 chr16:28912188 nonsynonymous SNV 0.985 5 25 hm5C_associated_SNPs_51068 0 0 1 0 1 ATP2A1 chr16:28912237 5'GT 28912237 Upstream 50bp
chr19 41089339 41089339 1 + G T HNSC 41089336 + 41089316 41089356 41 CAGCCCATCACCAGTTATGACGCGGCAGGCTCCTTCCTCCT CAGCCCATCACCAGTTATGACGCTGCAGGCTCCTTCCTCCT < 41bp 0.831192760151032 0.465831480574413 0.89480585 0.5407528 prediction 0.662385520302064 Functional Loss - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41089336 chr19:41089339 synonymous SNV . 0 24 hm5C_associated_SNPs_51069 0 0 1 0 2 SHKBP1 chr19:41089304 3'AG 41089304 Downstream 36bp
chr19 41089339 41089339 1 + G T HNSC 41089336 + 41089316 41089356 41 CAGCCCATCACCAGTTATGACGCGGCAGGCTCCTTCCTCCT CAGCCCATCACCAGTTATGACGCTGCAGGCTCCTTCCTCCT < 41bp 0.831192760151032 0.465831480574413 0.89480585 0.5407528 prediction 0.662385520302064 Functional Loss - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41089336 chr19:41089339 synonymous SNV . 0 24 hm5C_associated_SNPs_51069 0 0 1 0 2 SHKBP1 chr19:41089391 5'GT 41089391 Upstream 53bp
chr5 141307750 141307750 1 + G T COAD 141307747 + 141307727 141307767 41 CGTGCTGGCCCTGCAGCTGGCAAGGCAGATCCACTTCCAGG CGTGCTGGCCCTGCAGCTGGCAATGCAGATCCACTTCCAGG < 41bp 0.831139860940376 0.457146450965386 0.7502653 0.19200546 prediction 0.662279721880752 Functional Loss - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141307747 chr5:141307750 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51071 0 0 1 0 1 KIAA0141 chr5:141307716 3'AG 141307716 Downstream 35bp
chr18 48248343 48248343 1 + G T LUSC 48248340 + 48248320 48248360 41 TGGAGCAGATGCAACTCATCCTGGAGACCATCCCTGTAATC TGGAGCAGATGCAACTCATCCTGTAGACCATCCCTGTAATC < 41bp 0.854348587114322 0.523228826839824 0.14699519 0.030482858 prediction 0.662239520548995 Functional Loss - MAPK4 ENSG00000141639 CDS Human protein_coding chr18:48248340 chr18:48248343 stopgain 0.999 0 24 hm5C_associated_SNPs_51073 0 0 0 0 1 MAPK4 chr18:48248308 3'AG 48248308 Downstream 36bp
chr10 45924191 45924191 1 + G T UCEC 45924188 + 45924168 45924208 41 CTGTATAAGAACCTGGCCAACAAGATTGTCCCCATTGCCAT CTGTATAAGAACCTGGCCAACAATATTGTCCCCATTGCCAT < 41bp 0.859771672446783 0.52870614982191 0.41427776 0.17720357 prediction 0.662131045249747 Functional Loss - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45924188 chr10:45924191 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51075 0 0 1 0 1 ALOX5 chr10:45924212 5'GT 45924212 Upstream 22bp
chr17 7214775 7214775 1 + A C STAD 7214771 + 7214751 7214791 41 ACCTTGGCAAGGAGATTGAGCAGAAGTACGACTGTGGAGAA ACCTTGGCAAGGAGATTGAGCAGACGTACGACTGTGGAGAA < 41bp 0.831062818862807 0.465724083909052 0.46998182 0.50453615 prediction 0.662125637725614 Functional Loss - EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214771 chr17:7214775 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_51076 0 0 1 0 1 EIF5A chr17:7214800 5'GT 7214800 Upstream 26bp
chr12 125626690 125626690 1 + G T LUAD 125626687 + 125626667 125626707 41 TGCCGTCAAACAGATCATCGCTGGAAAAGCCGTGGAGCAAG TGCCGTCAAACAGATCATCGCTGTAAAAGCCGTGGAGCAAG < 41bp 0.849148725867847 0.51812357666396 0.3427869 0.12765789 prediction 0.662050298407775 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125626687 chr12:125626690 nonsynonymous SNV 0.015 4 24 hm5C_associated_SNPs_51082 0 0 1 0 1 AACS chr12:125626638 3'AG 125626638 Downstream 53bp
chr17 4856127 4856127 1 + G T LUAD 4856124 + 4856104 4856144 41 GCTGTGCCCAGTGGGGCTTCCACGGGTATCTATGAGGCTCT GCTGTGCCCAGTGGGGCTTCCACTGGTATCTATGAGGCTCT < 41bp 0.867861622809918 0.536841884114873 0.8756115 0.27951762 prediction 0.662039477390091 Functional Loss - ENO3 ENSG00000108515 CDS Human protein_coding chr17:4856124 chr17:4856127 synonymous SNV . 0 24 hm5C_associated_SNPs_51083 0 0 0 0 2 ENO3 chr17:4856090 3'AG 4856090 Downstream 38bp
chr17 4856127 4856127 1 + G T LUAD 4856124 + 4856104 4856144 41 GCTGTGCCCAGTGGGGCTTCCACGGGTATCTATGAGGCTCT GCTGTGCCCAGTGGGGCTTCCACTGGTATCTATGAGGCTCT < 41bp 0.867861622809918 0.536841884114873 0.8756115 0.27951762 prediction 0.662039477390091 Functional Loss - ENO3 ENSG00000108515 CDS Human protein_coding chr17:4856124 chr17:4856127 synonymous SNV . 0 24 hm5C_associated_SNPs_51083 0 0 0 0 2 ENO3 chr17:4856185 5'GT 4856185 Upstream 59bp
chr4 187195356 187195356 1 + G T UCEC 187195353 + 187195333 187195373 41 CCAAGAGTGCTCAAGAATGCCAAGAAAGATGCACGGATGAC CCAAGAGTGCTCAAGAATGCCAATAAAGATGCACGGATGAC < 41bp 0.830995367958542 0.482646184303692 0.442542 0.24857417 prediction 0.661990735917083 Functional Loss - F11 ENSG00000088926 CDS Human protein_coding chr4:187195353 chr4:187195356 stopgain 0.907 0 24 hm5C_associated_SNPs_51086 0 0 0 0 2 F11 chr4:187195270 3'AG 187195270 Downstream 87bp
chr4 187195356 187195356 1 + G T UCEC 187195353 + 187195333 187195373 41 CCAAGAGTGCTCAAGAATGCCAAGAAAGATGCACGGATGAC CCAAGAGTGCTCAAGAATGCCAATAAAGATGCACGGATGAC < 41bp 0.830995367958542 0.482646184303692 0.442542 0.24857417 prediction 0.661990735917083 Functional Loss - F11 ENSG00000088926 CDS Human protein_coding chr4:187195353 chr4:187195356 stopgain 0.907 0 24 hm5C_associated_SNPs_51086 0 0 0 0 2 F11 chr4:187195429 5'GT 187195429 Upstream 74bp
chr1 905684 905684 1 + G T UCEC 905681 + 905661 905701 41 TCCTGGACCTGGAGAACCAGCGAGAAAACCTGGAGCAGCCA TCCTGGACCTGGAGAACCAGCGATAAAACCTGGAGCAGCCA < 41bp 0.83098559139872 0.475752028361502 0.9194356 0.9101613 prediction 0.66197118279744 Functional Loss - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:905681 chr1:905684 stopgain 0.007 0 24 hm5C_associated_SNPs_51087 0 0 1 0 1 PLEKHN1 chr1:905657 3'AG 905657 Downstream 28bp
chr8 101252666 101252666 1 + A C STAD 101252662 + 101252642 101252682 41 CAAGGAGGAGCCTGGAAGACCTGCAGGGGAGGTCTCCATGG CAAGGAGGAGCCTGGAAGACCTGCCGGGGAGGTCTCCATGG < 41bp 0.881479703311355 0.550538763342601 0.61105156 0.2214694 prediction 0.661881879937508 Functional Loss - SPAG1 ENSG00000104450 CDS Human protein_coding chr8:101252662 chr8:101252666 synonymous SNV . 0 25 hm5C_associated_SNPs_51089 0 0 0 0 1 SPAG1 chr8:101252631 3'AG 101252631 Downstream 36bp
chr16 46943636 46943636 1 + G T LUSC 46943633 + 46943613 46943653 41 CGTCTCCGGGGGCGGCAAGTCACGGACAGGTGTGATGATCC CGTCTCCGGGGGCGGCAAGTCACTGACAGGTGTGATGATCC < 41bp 0.830867873240864 0.459533121832054 0.2351538 0.030484289 prediction 0.661735746481727 Functional Loss - GPT2 ENSG00000166123 CDS Human protein_coding chr16:46943633 chr16:46943636 nonsynonymous SNV 0.981 1 24 hm5C_associated_SNPs_51091 0 0 1 0 1 GPT2 chr16:46943596 3'AG 46943596 Downstream 41bp
chr2 133175440 133175440 1 + G T LUSC 133175437 + 133175417 133175457 41 AAGTCCGAGAGCGAAGAGAGCAGGACCGCCAGGAGGCAGAC AAGTCCGAGAGCGAAGAGAGCAGTACCGCCAGGAGGCAGAC < 41bp 0.853058827691582 0.522250474948478 0.38631332 0.25367635 prediction 0.661616705486209 Functional Loss - GPR39 ENSG00000183840 CDS Human protein_coding chr2:133175437 chr2:133175440 nonsynonymous SNV 0.986 1 24 hm5C_associated_SNPs_51094 0 0 0 0 1 GPR39 chr2:133175471 5'GT 133175471 Upstream 32bp
chr2 3727464 3727464 1 + G T LUSC 3727461 + 3727441 3727481 41 GTCCTCTGTGTTGCGCAGGTCACGACTGGTGTGTCCTCAGG GTCCTCTGTGTTGCGCAGGTCACTACTGGTGTGTCCTCAGG < 41bp 0.830714527341705 0.491459737882681 0.14472574 0.11265057 prediction 0.66142905468341 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3727461 chr2:3727464 nonsynonymous SNV 0.012 4 24 hm5C_associated_SNPs_51096 0 0 0 0 1 ALLC chr2:3727459 3'AG 3727459 Downstream 6bp
chr9 123931934 123931934 1 + G T DLBC 123931931 + 123931911 123931951 41 GCAGCAATTGGTGGAGAAATCAGGTGAGCTGTTGGCCCTCC GCAGCAATTGGTGGAGAAATCAGTTGAGCTGTTGGCCCTCC < 41bp 0.844076366767261 0.513404878046717 0.9081397 0.6915842 prediction 0.661342977441088 Functional Loss - CNTRL ENSG00000119397 CDS Human protein_coding chr9:123931931 chr9:123931934 nonsynonymous SNV 0.069 0 24 hm5C_associated_SNPs_51097 0 0 1 0 1 CNTRL chr9:123931889 3'AG 123931889 Downstream 46bp
chr2 46808686 46808686 1 - C A COAD 46808689 - 46808669 46808709 41 CTTGGAGCGACCTTTGGCTACGTGGCTGGCCTTGTTATTTC CTTGGAGCGACCTTTGGCTACGTTGCTGGCCTTGTTATTTC < 41bp 0.843311229619207 0.512662360849134 0.108520985 0.036361575 prediction 0.661297737540146 Functional Loss - PIGF ENSG00000151665 CDS Human protein_coding chr2:46808689 chr2:46808686 synonymous SNV . 0 24 hm5C_associated_SNPs_51098 0 0 1 1 1 PIGF chr2:46808730 3'AG 46808730 Downstream 45bp
chr1 203472100 203472100 1 + G T LIHC 203472097 + 203472077 203472117 41 CAACCTGCTGGATTCTATCCCGGGGCCTTTGCCCCTGAGCC CAACCTGCTGGATTCTATCCCGGTGCCTTTGCCCCTGAGCC < 41bp 0.830646840861068 0.449567225282246 0.9482504 0.8891574 prediction 0.661293681722136 Functional Loss - OPTC ENSG00000188770 CDS Human protein_coding chr1:203472097 chr1:203472100 nonsynonymous SNV 0.527 0 24 hm5C_associated_SNPs_51100 0 0 0 0 2 OPTC chr1:203472042 3'AG 203472042 Downstream 59bp
chr1 203472100 203472100 1 + G T LIHC 203472097 + 203472077 203472117 41 CAACCTGCTGGATTCTATCCCGGGGCCTTTGCCCCTGAGCC CAACCTGCTGGATTCTATCCCGGTGCCTTTGCCCCTGAGCC < 41bp 0.830646840861068 0.449567225282246 0.9482504 0.8891574 prediction 0.661293681722136 Functional Loss - OPTC ENSG00000188770 CDS Human protein_coding chr1:203472097 chr1:203472100 nonsynonymous SNV 0.527 0 24 hm5C_associated_SNPs_51100 0 0 0 0 2 OPTC chr1:203472137 5'GT 203472137 Upstream 38bp
chr6 43033394 43033394 1 + G T COAD 43033391 + 43033371 43033411 41 GCGATGCCACCAAGGATTCCCTGGATGACCTCTTTCCTAAT GCGATGCCACCAAGGATTCCCTGTATGACCTCTTTCCTAAT < 41bp 0.853123935245419 0.522489636407652 0.8463761 0.34402496 prediction 0.661268597675533 Functional Loss - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43033391 chr6:43033394 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51101 0 0 1 0 2 KLC4 chr6:43033358 3'AG 43033358 Downstream 37bp
chr6 43033394 43033394 1 + G T COAD 43033391 + 43033371 43033411 41 GCGATGCCACCAAGGATTCCCTGGATGACCTCTTTCCTAAT GCGATGCCACCAAGGATTCCCTGTATGACCTCTTTCCTAAT < 41bp 0.853123935245419 0.522489636407652 0.8463761 0.34402496 prediction 0.661268597675533 Functional Loss - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43033391 chr6:43033394 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51101 0 0 1 0 2 KLC4 chr6:43033439 5'GT 43033439 Upstream 46bp
chr22 18894238 18894238 1 + G T STAD 18894235 + 18894215 18894255 41 TGCGCCTACAGAACGAGCATCGAGGTGCGCGGGGGCAGCGG TGCGCCTACAGAACGAGCATCGATGTGCGCGGGGGCAGCGG < 41bp 0.830618872509882 0.467390199647682 0.9034323 0.38782626 prediction 0.661237745019764 Functional Loss - DGCR6 ENSG00000183628 CDS Human protein_coding chr22:18894235 chr22:18894238 nonsynonymous SNV 0.979 0 24 hm5C_associated_SNPs_51102 0 0 0 0 1 DGCR6 chr22:18894238 5'GT 18894238 Upstream 1bp
chr6 33365901 33365901 1 + G T SARC 33365898 + 33365878 33365918 41 CCTCTCTCAGGAAGCAGACTCAAGAGGAGGCCTGACCAGAT CCTCTCTCAGGAAGCAGACTCAATAGGAGGCCTGACCAGAT < 41bp 0.860346488522134 0.529746489368771 0.8265374 0.1748004 prediction 0.661199998306726 Functional Loss - KIFC1 ENSG00000237649 CDS Human protein_coding chr6:33365898 chr6:33365901 nonsynonymous SNV 0.901 2 24 hm5C_associated_SNPs_51103 0 0 1 0 2 KIFC1 chr6:33365806 3'AG 33365806 Downstream 96bp
chr6 33365901 33365901 1 + G T SARC 33365898 + 33365878 33365918 41 CCTCTCTCAGGAAGCAGACTCAAGAGGAGGCCTGACCAGAT CCTCTCTCAGGAAGCAGACTCAATAGGAGGCCTGACCAGAT < 41bp 0.860346488522134 0.529746489368771 0.8265374 0.1748004 prediction 0.661199998306726 Functional Loss - KIFC1 ENSG00000237649 CDS Human protein_coding chr6:33365898 chr6:33365901 nonsynonymous SNV 0.901 2 24 hm5C_associated_SNPs_51103 0 0 1 0 2 KIFC1 chr6:33365943 5'GT 33365943 Upstream 43bp
chr8 27361273 27361273 1 + G T BLCA 27361270 + 27361250 27361290 41 CTCCAGGCAGCTCTCATGCTCAGGAAGAAAGGTAAGGATCT CTCCAGGCAGCTCTCATGCTCAGTAAGAAAGGTAAGGATCT < 41bp 0.83057261441281 0.46964456544576 0.88242954 0.19797063 prediction 0.66114522882562 Functional Loss - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27361270 chr8:27361273 nonsynonymous SNV 0.322 3 24 hm5C_associated_SNPs_51105 0 0 1 0 1 EPHX2 chr8:27361280 5'GT 27361280 Upstream 8bp
chr16 30387978 30387978 1 + G T UCEC 30387975 + 30387955 30387995 41 GATGTGATCACCGGAGCCTTCAAGGTCTTGGACCCTGAGGG GATGTGATCACCGGAGCCTTCAATGTCTTGGACCCTGAGGG < 41bp 0.830566583643605 0.4596180408603 0.8508338 0.20454448 prediction 0.661133167287211 Functional Loss - MYLPF ENSG00000180209 CDS Human protein_coding chr16:30387975 chr16:30387978 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51106 0 0 0 0 2 MYLPF chr16:30387941 3'AG 30387941 Downstream 38bp
chr16 30387978 30387978 1 + G T UCEC 30387975 + 30387955 30387995 41 GATGTGATCACCGGAGCCTTCAAGGTCTTGGACCCTGAGGG GATGTGATCACCGGAGCCTTCAATGTCTTGGACCCTGAGGG < 41bp 0.830566583643605 0.4596180408603 0.8508338 0.20454448 prediction 0.661133167287211 Functional Loss - MYLPF ENSG00000180209 CDS Human protein_coding chr16:30387975 chr16:30387978 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51106 0 0 0 0 2 MYLPF chr16:30388019 5'GT 30388019 Upstream 42bp
chr2 207652825 207652825 1 + G T LUAD 207652822 + 207652802 207652842 41 CAGAGGTGCTGAGCAGCCTTCTGGGAGGTGAAGGACACTTC CAGAGGTGCTGAGCAGCCTTCTGTGAGGTGAAGGACACTTC < 41bp 0.830561169826194 0.486923958995842 0.8409128 0.34250677 prediction 0.661122339652388 Functional Loss - FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207652822 chr2:207652825 stopgain 0.173 0 24 hm5C_associated_SNPs_51108 0 0 1 0 1 FASTKD2 chr2:207652879 5'GT 207652879 Upstream 55bp
chr4 190878657 190878657 1 + G T UCEC 190878654 + 190878634 190878674 41 GCAGGAGAAGAAGAAATGATCAAGGTAATGATGACATTTTA GCAGGAGAAGAAGAAATGATCAATGTAATGATGACATTTTA < 41bp 0.83050264297276 0.488170279521044 0.9302496 0.9042028 prediction 0.661005285945521 Functional Loss - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190878654 chr4:190878657 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_51113 0 0 0 0 1 FRG1 chr4:190878657 5'GT 190878657 Upstream 1bp
chr3 129185898 129185898 1 + G T LUAD 129185895 + 129185875 129185915 41 GAGGAAGAGGACGACAGTCCCAGGGACGACAACTTGTGAGT GAGGAAGAGGACGACAGTCCCAGTGACGACAACTTGTGAGT < 41bp 0.834254338139274 0.503784022509021 0.93415415 0.7916323 prediction 0.660940631260506 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129185895 chr3:129185898 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_51114 0 0 0 0 1 IFT122 chr3:129185909 5'GT 129185909 Upstream 12bp
chr5 133707328 133707328 1 + G T SARC 133707325 + 133707305 133707345 41 AGGAGGCTCATGCGGGATTTCAAGCGGTAAGGGCCTTCACC AGGAGGCTCATGCGGGATTTCAATCGGTAAGGGCCTTCACC < 41bp 0.843998813070271 0.513565661961082 0.9288691 0.7678269 prediction 0.660866302218378 Functional Loss - UBE2B ENSG00000119048 CDS Human protein_coding chr5:133707325 chr5:133707328 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51117 0 0 1 0 1 UBE2B chr5:133707330 5'GT 133707330 Upstream 3bp
chr1 44435983 44435983 1 + G T LUSC 44435980 + 44435960 44436000 41 TCGCTGGATTTGTCCGCGACCTGGGGTGTGAACGAGTGAGG TCGCTGGATTTGTCCGCGACCTGTGGTGTGAACGAGTGAGG < 41bp 0.848139177413765 0.517860271433374 0.7622833 0.1114105 prediction 0.660557811960781 Functional Loss - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44435980 chr1:44435983 nonsynonymous SNV 0.693 1 24 hm5C_associated_SNPs_51123 0 0 1 0 2 DPH2 chr1:44435942 3'AG 44435942 Downstream 42bp
chr1 44435983 44435983 1 + G T LUSC 44435980 + 44435960 44436000 41 TCGCTGGATTTGTCCGCGACCTGGGGTGTGAACGAGTGAGG TCGCTGGATTTGTCCGCGACCTGTGGTGTGAACGAGTGAGG < 41bp 0.848139177413765 0.517860271433374 0.7622833 0.1114105 prediction 0.660557811960781 Functional Loss - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44435980 chr1:44435983 nonsynonymous SNV 0.693 1 24 hm5C_associated_SNPs_51123 0 0 1 0 2 DPH2 chr1:44435994 5'GT 44435994 Upstream 12bp
chr17 29325738 29325738 1 + G T UCEC 29325735 + 29325715 29325755 41 TCCTGCAGCCTGGAGGTGTCCAAGGATTCCCGTACAGTGAC TCCTGCAGCCTGGAGGTGTCCAATGATTCCCGTACAGTGAC < 41bp 0.85571435936613 0.525451744379571 0.6882363 0.15394303 prediction 0.660525229973119 Functional Loss - RNF135 ENSG00000181481 CDS Human protein_coding chr17:29325735 chr17:29325738 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_51126 0 0 0 1 1 RNF135 chr17:29325680 3'AG 29325680 Downstream 59bp
chr2 101097629 101097629 1 + G T OV 101097626 + 101097606 101097646 41 GGACGACCCTTTTTCCTTTTCAGGGTATAGCATGTTTTCTC GGACGACCCTTTTTCCTTTTCAGTGTATAGCATGTTTTCTC < 41bp 0.843009095200422 0.512760846035747 0.91941 0.21733597 prediction 0.66049649832935 Functional Loss - NMS ENSG00000204640 CDS Human protein_coding chr2:101097626 chr2:101097629 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51127 0 0 0 0 2 NMS chr2:101097588 3'AG 101097588 Downstream 42bp
chr2 101097629 101097629 1 + G T OV 101097626 + 101097606 101097646 41 GGACGACCCTTTTTCCTTTTCAGGGTATAGCATGTTTTCTC GGACGACCCTTTTTCCTTTTCAGTGTATAGCATGTTTTCTC < 41bp 0.843009095200422 0.512760846035747 0.91941 0.21733597 prediction 0.66049649832935 Functional Loss - NMS ENSG00000204640 CDS Human protein_coding chr2:101097626 chr2:101097629 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51127 0 0 0 0 2 NMS chr2:101097629 3'AG 101097629 Downstream 1bp
chr19 36120133 36120133 1 + G T LIHC 36120130 + 36120110 36120150 41 CCGGGTCCTGGCGCTGGCATCCCGGGCAAAAGCGGCGAGGA CCGGGTCCTGGCGCTGGCATCCCTGGCAAAAGCGGCGAGGA < 41bp 0.848743588698762 0.518532062049262 0.8625793 0.19327053 prediction 0.660423053299 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36120130 chr19:36120133 synonymous SNV . 0 24 hm5C_associated_SNPs_51128 0 0 1 0 1 RBM42 chr19:36120183 5'GT 36120183 Upstream 51bp
chr1 117603109 117603109 1 + G T LUSC 117603106 + 117603086 117603126 41 GCTTTCTTAAGACCGGCGTCCGCGATGGCCCGAATAAAGGA GCTTTCTTAAGACCGGCGTCCGCTATGGCCCGAATAAAGGA < 41bp 0.841818272069544 0.511640721279914 0.17899823 0.09145576 prediction 0.660355101579261 Functional Loss - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117603106 chr1:117603109 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51130 0 0 1 0 2 TTF2 chr1:117603077 3'AG 117603077 Downstream 33bp
chr1 117603109 117603109 1 + G T LUSC 117603106 + 117603086 117603126 41 GCTTTCTTAAGACCGGCGTCCGCGATGGCCCGAATAAAGGA GCTTTCTTAAGACCGGCGTCCGCTATGGCCCGAATAAAGGA < 41bp 0.841818272069544 0.511640721279914 0.17899823 0.09145576 prediction 0.660355101579261 Functional Loss - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117603106 chr1:117603109 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51130 0 0 1 0 2 TTF2 chr1:117603179 5'GT 117603179 Upstream 71bp
chr9 101797411 101797411 1 + G T UCEC 101797408 + 101797388 101797428 41 ACCCCCTGGGCCCCCAGGCCCTGGATGCACAATGGGACTTG ACCCCCTGGGCCCCCAGGCCCTGTATGCACAATGGGACTTG < 41bp 0.851332190246773 0.521162245031989 0.8832644 0.17102614 prediction 0.660339890429567 Functional Loss - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101797408 chr9:101797411 nonsynonymous SNV 0.966 3 24 hm5C_associated_SNPs_51131 0 0 0 0 1 COL15A1 chr9:101797436 5'GT 101797436 Upstream 26bp
chr1 215781456 215781456 1 + G T GBM 215781453 + 215781433 215781473 41 TCTACTCCTTTAGCGTCATTCAAGATACTATCCCTGGAGGA TCTACTCCTTTAGCGTCATTCAATATACTATCCCTGGAGGA < 41bp 0.847859034464036 0.517694158560418 0.36717764 0.2775575 prediction 0.660329751807236 Functional Loss - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215781453 chr1:215781456 nonsynonymous SNV 0.989 2 24 hm5C_associated_SNPs_51132 0 0 1 0 2 KCTD3 chr1:215781359 3'AG 215781359 Downstream 98bp
chr1 215781456 215781456 1 + G T GBM 215781453 + 215781433 215781473 41 TCTACTCCTTTAGCGTCATTCAAGATACTATCCCTGGAGGA TCTACTCCTTTAGCGTCATTCAATATACTATCCCTGGAGGA < 41bp 0.847859034464036 0.517694158560418 0.36717764 0.2775575 prediction 0.660329751807236 Functional Loss - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215781453 chr1:215781456 nonsynonymous SNV 0.989 2 24 hm5C_associated_SNPs_51132 0 0 1 0 2 KCTD3 chr1:215781514 5'GT 215781514 Upstream 59bp
chr16 10574756 10574756 1 + G T OV 10574753 + 10574733 10574773 41 CAGAAAGTCCAGTATCCCCCCTGGAGTCACATTCGAAAGCT CAGAAAGTCCAGTATCCCCCCTGTAGTCACATTCGAAAGCT < 41bp 0.845815888444518 0.515654626383363 0.2604686 0.09808263 prediction 0.660322524122311 Functional Loss - ATF7IP2 ENSG00000166669 CDS Human protein_coding chr16:10574753 chr16:10574756 stopgain 0.137 0 24 hm5C_associated_SNPs_51133 0 0 0 0 2 ATF7IP2 chr16:10574736 3'AG 10574736 Downstream 21bp
chr16 10574756 10574756 1 + G T OV 10574753 + 10574733 10574773 41 CAGAAAGTCCAGTATCCCCCCTGGAGTCACATTCGAAAGCT CAGAAAGTCCAGTATCCCCCCTGTAGTCACATTCGAAAGCT < 41bp 0.845815888444518 0.515654626383363 0.2604686 0.09808263 prediction 0.660322524122311 Functional Loss - ATF7IP2 ENSG00000166669 CDS Human protein_coding chr16:10574753 chr16:10574756 stopgain 0.137 0 24 hm5C_associated_SNPs_51133 0 0 0 0 2 ATF7IP2 chr16:10574821 5'GT 10574821 Upstream 66bp
chr1 53927181 53927181 1 + G T LUAD 53927178 + 53927158 53927198 41 ACATCAACCCGGACCGTGCACTGGGCCCTGAGTACCCTGGT ACATCAACCCGGACCGTGCACTGTGCCCTGAGTACCCTGGT < 41bp 0.87076339008801 0.54062405857242 0.5895364 0.103913635 prediction 0.660278663031181 Functional Loss - DMRTB1 ENSG00000143006 CDS Human protein_coding chr1:53927178 chr1:53927181 nonsynonymous SNV 0.003 2 24 hm5C_associated_SNPs_51134 0 0 0 0 1 DMRTB1 chr1:53927146 3'AG 53927146 Downstream 36bp
chr2 242147042 242147042 1 + A C UCEC 242147038 + 242147018 242147058 41 TCGAGATGTGCCCACTTTGCCTCGACTGCCCTTTCTGGCTG TCGAGATGTGCCCACTTTGCCTCGCCTGCCCTTTCTGGCTG < 41bp 0.878434107134819 0.548344203046974 0.28847507 0.14714128 prediction 0.66017980817569 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242147038 chr2:242147042 nonsynonymous SNV 0.021 0 25 hm5C_associated_SNPs_51138 0 0 0 0 2 ANO7 chr2:242146989 3'AG 242146989 Downstream 54bp
chr2 242147042 242147042 1 + A C UCEC 242147038 + 242147018 242147058 41 TCGAGATGTGCCCACTTTGCCTCGACTGCCCTTTCTGGCTG TCGAGATGTGCCCACTTTGCCTCGCCTGCCCTTTCTGGCTG < 41bp 0.878434107134819 0.548344203046974 0.28847507 0.14714128 prediction 0.66017980817569 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242147038 chr2:242147042 nonsynonymous SNV 0.021 0 25 hm5C_associated_SNPs_51138 0 0 0 0 2 ANO7 chr2:242147085 5'GT 242147085 Upstream 44bp
chr4 185941492 185941492 1 + G T LUSC 185941489 + 185941469 185941509 41 ACCACGAGTGCATGAAGAACCTGGTGCATTACCTCACCACG ACCACGAGTGCATGAAGAACCTGTTGCATTACCTCACCACG < 41bp 0.830079339088113 0.478153427218389 0.47627488 0.19473752 prediction 0.660158678176227 Functional Loss - HELT ENSG00000187821 CDS Human protein_coding chr4:185941489 chr4:185941492 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51140 0 0 0 0 2 HELT chr4:185941427 3'AG 185941427 Downstream 66bp
chr4 185941492 185941492 1 + G T LUSC 185941489 + 185941469 185941509 41 ACCACGAGTGCATGAAGAACCTGGTGCATTACCTCACCACG ACCACGAGTGCATGAAGAACCTGTTGCATTACCTCACCACG < 41bp 0.830079339088113 0.478153427218389 0.47627488 0.19473752 prediction 0.660158678176227 Functional Loss - HELT ENSG00000187821 CDS Human protein_coding chr4:185941489 chr4:185941492 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51140 0 0 0 0 2 HELT chr4:185941430 3'AG 185941430 Downstream 63bp
chr7 154735807 154735807 1 + G T GBM 154735804 + 154735784 154735824 41 GCGCAGCAGCTCCTCGCCAGCCAGACAGCCAGCCCCGCACC GCGCAGCAGCTCCTCGCCAGCCATACAGCCAGCCCCGCACC < 41bp 0.863958295213937 0.533888615520257 0.40690196 0.09309223 prediction 0.66013935938736 Functional Loss - PAXIP1-AS2 ENSG00000214106 CDS Human antisense chr7:154735804 chr7:154735807 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_51141 0 0 0 0 1 PAXIP1-AS2 chr7:154735737 3'AG 154735737 Downstream 71bp
chr8 133906153 133906153 1 + A C rs111363334 133906149 + 133906129 133906169 41 TTTCTGCGTGGGAGTGATTACGCCATTCGCCTGGCGGCTCA TTTCTGCGTGGGAGTGATTACGCCCTTCGCCTGGCGGCTCA < 41bp 0.830064274305057 0.477782298640861 0.88429105 0.3370272 prediction 0.660128548610115 Functional Loss - TG ENSG00000042832 CDS Human protein_coding chr8:133906149 chr8:133906153 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_51142 0 0 0 0 1 TG chr8:133906174 5'GT 133906174 Upstream 22bp
chr2 48018102 48018102 1 + G T UCEC 48018099 + 48018079 48018119 41 CCAGGAGATTTGGTTTGGGCCAAGATGGAGGGTTACCCCTG CCAGGAGATTTGGTTTGGGCCAATATGGAGGGTTACCCCTG < 41bp 0.852046216513594 0.522010044078551 0.733453 0.4444609 prediction 0.660072344870085 Functional Loss - MSH6 ENSG00000116062 CDS Human protein_coding chr2:48018099 chr2:48018102 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_51143 1 0 1 0 1 MSH6 chr2:48018066 3'AG 48018066 Downstream 37bp
chr22 35811893 35811893 1 + G T UCEC 35811890 + 35811870 35811910 41 GTGATGAGGGACCCTTCGTCCCGGAATTTCATCATGGAGGG GTGATGAGGGACCCTTCGTCCCGTAATTTCATCATGGAGGG < 41bp 0.829975676108678 0.469322350346086 0.40385413 0.2085802 prediction 0.659951352217355 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35811890 chr22:35811893 synonymous SNV . 0 24 hm5C_associated_SNPs_51146 0 0 1 0 2 MCM5 chr22:35811822 3'AG 35811822 Downstream 72bp
chr22 35811893 35811893 1 + G T UCEC 35811890 + 35811870 35811910 41 GTGATGAGGGACCCTTCGTCCCGGAATTTCATCATGGAGGG GTGATGAGGGACCCTTCGTCCCGTAATTTCATCATGGAGGG < 41bp 0.829975676108678 0.469322350346086 0.40385413 0.2085802 prediction 0.659951352217355 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35811890 chr22:35811893 synonymous SNV . 0 24 hm5C_associated_SNPs_51146 0 0 1 0 2 MCM5 chr22:35811965 5'GT 35811965 Upstream 73bp
chr1 68152224 68152224 1 + G T LUAD 68152221 + 68152201 68152241 41 GACCGACGCTGGCCCCGCGGCGAGCGAGGGCGCCGAGCAGC GACCGACGCTGGCCCCGCGGCGATCGAGGGCGCCGAGCAGC < 41bp 0.829931765195639 0.475381564704003 0.6008656 0.19191062 prediction 0.659863530391279 Functional Loss - GADD45A ENSG00000116717 CDS Human protein_coding chr1:68152221 chr1:68152224 nonsynonymous SNV 0.836 0 24 hm5C_associated_SNPs_51148 0 0 1 0 1 GADD45A chr1:68152270 5'GT 68152270 Upstream 47bp
chr2 15753382 15753382 1 + G T LUAD 15753379 + 15753359 15753399 41 TAATTGGAGGTGTTGCAGCCCGGGATCAGCTCTCTGTTTTG TAATTGGAGGTGTTGCAGCCCGGTATCAGCTCTCTGTTTTG < 41bp 0.856894985298721 0.527021956578831 0.88954395 0.28210002 prediction 0.659746057439779 Functional Loss - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15753379 chr2:15753382 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_51150 0 0 1 0 2 DDX1 chr2:15753348 3'AG 15753348 Downstream 35bp
chr2 15753382 15753382 1 + G T LUAD 15753379 + 15753359 15753399 41 TAATTGGAGGTGTTGCAGCCCGGGATCAGCTCTCTGTTTTG TAATTGGAGGTGTTGCAGCCCGGTATCAGCTCTCTGTTTTG < 41bp 0.856894985298721 0.527021956578831 0.88954395 0.28210002 prediction 0.659746057439779 Functional Loss - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15753379 chr2:15753382 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_51150 0 0 1 0 2 DDX1 chr2:15753408 5'GT 15753408 Upstream 27bp
chrX 49105127 49105127 1 + G T UCEC 49105124 + 49105104 49105144 41 CTCGACGGCTGGCAGAGATCCAAGAACTGCACCAGAGTGTC CTCGACGGCTGGCAGAGATCCAATAACTGCACCAGAGTGTC < 41bp 0.829863738407102 0.466824959405033 0.82216287 0.2891516 prediction 0.659727476814205 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49105124 chrX:49105127 stopgain 0.998 0 24 hm5C_associated_SNPs_51151 0 0 1 0 2 CCDC22 chrX:49105094 3'AG 49105094 Downstream 34bp
chrX 49105127 49105127 1 + G T UCEC 49105124 + 49105104 49105144 41 CTCGACGGCTGGCAGAGATCCAAGAACTGCACCAGAGTGTC CTCGACGGCTGGCAGAGATCCAATAACTGCACCAGAGTGTC < 41bp 0.829863738407102 0.466824959405033 0.82216287 0.2891516 prediction 0.659727476814205 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49105124 chrX:49105127 stopgain 0.998 0 24 hm5C_associated_SNPs_51151 0 0 1 0 2 CCDC22 chrX:49105195 5'GT 49105195 Upstream 69bp
chr1 246823612 246823612 1 + G T UCEC 246823609 + 246823589 246823629 41 CTAAGCGAAGAGTGAGATTCCAAGAAATAGACGATAGCTTG CTAAGCGAAGAGTGAGATTCCAATAAATAGACGATAGCTTG < 41bp 0.845772001930637 0.5159122750149 0.26381487 0.10328862 prediction 0.659719453831475 Functional Loss - CNST ENSG00000162852 CDS Human protein_coding chr1:246823609 chr1:246823612 stopgain 0.998 1 24 hm5C_associated_SNPs_51152 0 0 0 0 1 CNST chr1:246823636 5'GT 246823636 Upstream 25bp
chr16 90106785 90106785 1 + G T UCEC 90106782 + 90106762 90106802 41 GTGCAGCAGAAGACAGGGTTCAAGAACCTCGTGCTAGAACG GTGCAGCAGAAGACAGGGTTCAATAACCTCGTGCTAGAACG < 41bp 0.829847102295076 0.477554637082747 0.28912878 0.2540608 prediction 0.659694204590153 Functional Loss - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90106782 chr16:90106785 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51154 0 0 1 0 1 GAS8 chr16:90106708 3'AG 90106708 Downstream 78bp
chr15 40683726 40683726 1 + G T COAD 40683723 + 40683703 40683743 41 GTGAGACCCTGGCATCACGACAAGAATCCACTACTGATCAC GTGAGACCCTGGCATCACGACAATAATCCACTACTGATCAC < 41bp 0.829840846058682 0.480701962977911 0.28699666 0.22636554 prediction 0.659681692117364 Functional Loss - KNSTRN ENSG00000128944 CDS Human protein_coding chr15:40683723 chr15:40683726 stopgain 0.114 0 24 hm5C_associated_SNPs_51155 0 0 1 0 2 KNSTRN chr15:40683694 3'AG 40683694 Downstream 33bp
chr15 40683726 40683726 1 + G T COAD 40683723 + 40683703 40683743 41 GTGAGACCCTGGCATCACGACAAGAATCCACTACTGATCAC GTGAGACCCTGGCATCACGACAATAATCCACTACTGATCAC < 41bp 0.829840846058682 0.480701962977911 0.28699666 0.22636554 prediction 0.659681692117364 Functional Loss - KNSTRN ENSG00000128944 CDS Human protein_coding chr15:40683723 chr15:40683726 stopgain 0.114 0 24 hm5C_associated_SNPs_51155 0 0 1 0 2 KNSTRN chr15:40683755 5'GT 40683755 Upstream 30bp
chr15 66180086 66180086 1 + A C UCEC 66180082 + 66180062 66180102 41 AAGCAAATGTCAGACAGACGCGAAAATGACATGTCTCCAAG AAGCAAATGTCAGACAGACGCGAACATGACATGTCTCCAAG < 41bp 0.854262706468102 0.524451878640269 0.28481486 0.1770828 prediction 0.659621655655666 Functional Loss - RAB11A ENSG00000103769 CDS Human protein_coding chr15:66180082 chr15:66180086 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_51157 0 0 1 0 2 RAB11A chr15:66180039 3'AG 66180039 Downstream 48bp
chr15 66180086 66180086 1 + A C UCEC 66180082 + 66180062 66180102 41 AAGCAAATGTCAGACAGACGCGAAAATGACATGTCTCCAAG AAGCAAATGTCAGACAGACGCGAACATGACATGTCTCCAAG < 41bp 0.854262706468102 0.524451878640269 0.28481486 0.1770828 prediction 0.659621655655666 Functional Loss - RAB11A ENSG00000103769 CDS Human protein_coding chr15:66180082 chr15:66180086 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_51157 0 0 1 0 2 RAB11A chr15:66180062 3'AG 66180062 Downstream 25bp
chr2 7160760 7160760 1 + G T LUSC 7160757 + 7160737 7160777 41 CTGCAAAGCCAGCTGGCACCCTGGCCAGGGCTGCCCGGAGA CTGCAAAGCCAGCTGGCACCCTGTCCAGGGCTGCCCGGAGA < 41bp 0.829714976874852 0.478524724487731 0.1189723 0.16828421 prediction 0.659429953749704 Functional Loss - RNF144A ENSG00000151692 CDS Human protein_coding chr2:7160757 chr2:7160760 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51160 0 0 1 0 1 RNF144A chr2:7160811 5'GT 7160811 Upstream 52bp
chr17 33507617 33507617 1 + G T UCEC 33507614 + 33507594 33507634 41 GAGAGGGCCTTGCCAGACATCGAGAACTACATGTTTGAGAA GAGAGGGCCTTGCCAGACATCGATAACTACATGTTTGAGAA < 41bp 0.829698558496174 0.477346743157998 0.8319833 0.31254804 prediction 0.659397116992348 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33507614 chr17:33507617 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_51161 0 0 0 0 2 UNC45B chr17:33507578 3'AG 33507578 Downstream 40bp
chr17 33507617 33507617 1 + G T UCEC 33507614 + 33507594 33507634 41 GAGAGGGCCTTGCCAGACATCGAGAACTACATGTTTGAGAA GAGAGGGCCTTGCCAGACATCGATAACTACATGTTTGAGAA < 41bp 0.829698558496174 0.477346743157998 0.8319833 0.31254804 prediction 0.659397116992348 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33507614 chr17:33507617 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_51161 0 0 0 0 2 UNC45B chr17:33507695 5'GT 33507695 Upstream 79bp
chr17 73811302 73811302 1 + G T BLCA 73811299 + 73811279 73811319 41 GCAGCAGTCGGGCAGCTGTCCCCGAGGACCCTTCTGCGCCT GCAGCAGTCGGGCAGCTGTCCCCTAGGACCCTTCTGCGCCT < 41bp 0.829687753747681 0.464200902191967 0.38804668 0.051997215 prediction 0.659375507495362 Functional Loss - UNK ENSG00000132478 CDS Human protein_coding chr17:73811299 chr17:73811302 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51163 0 0 1 0 2 UNK chr17:73811250 3'AG 73811250 Downstream 53bp
chr17 73811302 73811302 1 + G T BLCA 73811299 + 73811279 73811319 41 GCAGCAGTCGGGCAGCTGTCCCCGAGGACCCTTCTGCGCCT GCAGCAGTCGGGCAGCTGTCCCCTAGGACCCTTCTGCGCCT < 41bp 0.829687753747681 0.464200902191967 0.38804668 0.051997215 prediction 0.659375507495362 Functional Loss - UNK ENSG00000132478 CDS Human protein_coding chr17:73811299 chr17:73811302 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51163 0 0 1 0 2 UNK chr17:73811334 5'GT 73811334 Upstream 33bp
chr7 143079497 143079497 1 + A C rs566953376 143079493 + 143079473 143079513 41 TCCCTTCCCCGCCGCCTCCTCCGGAGGAGGAGGGAGGGCCT TCCCTTCCCCGCCGCCTCCTCCGGCGGAGGAGGGAGGGCCT < 41bp 0.860379970405099 0.53072240846659 0.88945806 0.8742155 prediction 0.659315123877017 Functional Loss - ZYX ENSG00000159840 CDS Human protein_coding chr7:143079493 chr7:143079497 nonsynonymous SNV 0.029 0 25 hm5C_associated_SNPs_51164 0 0 1 0 1 ZYX chr7:143079540 5'GT 143079540 Upstream 44bp
chr9 124094780 124094780 1 + G T PRAD 124094777 + 124094757 124094797 41 CGCCCATCACCGTGGTGAAGCAAGGCTTTGAGCCTCCCTCC CGCCCATCACCGTGGTGAAGCAATGCTTTGAGCCTCCCTCC < 41bp 0.829645791685991 0.483514051225361 0.85107255 0.19990483 prediction 0.659291583371982 Functional Loss - GSN ENSG00000148180 CDS Human protein_coding chr9:124094777 chr9:124094780 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_51166 0 0 1 0 1 GSN chr9:124094712 3'AG 124094712 Downstream 69bp
chr2 241808604 241808604 1 + G T SARC 241808601 + 241808581 241808621 41 ATGCAGATCATGGACGAGATCAAGGAAGGCATCCAGTACGT ATGCAGATCATGGACGAGATCAATGAAGGCATCCAGTACGT < 41bp 0.866851702328392 0.53722279320809 0.27546573 0.014988065 prediction 0.659257818240604 Functional Loss - AGXT ENSG00000172482 CDS Human protein_coding chr2:241808601 chr2:241808604 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_51168 0 0 0 0 1 AGXT chr2:241808587 3'AG 241808587 Downstream 18bp
chr1 17681153 17681153 1 + G T LUSC 17681150 + 17681130 17681170 41 GGCAAGGAATACCCGCTGGGCAGGATTCTCTTCGGGGACAG GGCAAGGAATACCCGCTGGGCAGTATTCTCTTCGGGGACAG < 41bp 0.852058083570924 0.522437244892411 0.16762584 0.064536065 prediction 0.659241677357026 Functional Loss - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17681150 chr1:17681153 nonsynonymous SNV 0.980 4 24 hm5C_associated_SNPs_51170 0 0 0 0 1 PADI4 chr1:17681182 5'GT 17681182 Upstream 30bp
chr9 104170256 104170256 1 + A C UCEC 104170252 + 104170232 104170272 41 ATGAGGAGCCAACTGTAAAACAAGAGATTGAAGAAATTGAG ATGAGGAGCCAACTGTAAAACAAGCGATTGAAGAAATTGAG < 41bp 0.850132533174921 0.520592251921558 0.2768671 0.24376926 prediction 0.659080562506726 Functional Loss - ZNF189 ENSG00000136870 CDS Human protein_coding chr9:104170252 chr9:104170256 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_51173 0 0 1 0 1 ZNF189 chr9:104170211 3'AG 104170211 Downstream 46bp
chr13 25265367 25265367 1 + G T UCEC 25265364 + 25265344 25265384 41 ATCATTGTGGCCAATGTGCCCGAGGGCCTCCTGGCCACTGT ATCATTGTGGCCAATGTGCCCGATGGCCTCCTGGCCACTGT < 41bp 0.871363968035235 0.541845159589178 0.8241354 0.035576284 prediction 0.659037616892114 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25265364 chr13:25265367 nonsynonymous SNV 0.981 3 24 hm5C_associated_SNPs_51175 0 0 0 0 1 ATP12A chr13:25265388 5'GT 25265388 Upstream 22bp
chr11 69062897 69062897 1 + G T BLCA 69062894 + 69062874 69062914 41 GCACTCGCTGTTGCCTCTGCCTGGAACAGTCTCCCTCCTGG GCACTCGCTGTTGCCTCTGCCTGTAACAGTCTCCCTCCTGG < 41bp 0.829422668435967 0.477081328566455 0.5608713 0.11839059 prediction 0.658845336871935 Functional Loss - MYEOV ENSG00000172927 CDS Human protein_coding chr11:69062894 chr11:69062897 stopgain 0.018 0 24 hm5C_associated_SNPs_51180 0 0 0 0 2 MYEOV chr11:69062868 3'AG 69062868 Downstream 30bp
chr11 69062897 69062897 1 + G T BLCA 69062894 + 69062874 69062914 41 GCACTCGCTGTTGCCTCTGCCTGGAACAGTCTCCCTCCTGG GCACTCGCTGTTGCCTCTGCCTGTAACAGTCTCCCTCCTGG < 41bp 0.829422668435967 0.477081328566455 0.5608713 0.11839059 prediction 0.658845336871935 Functional Loss - MYEOV ENSG00000172927 CDS Human protein_coding chr11:69062894 chr11:69062897 stopgain 0.018 0 24 hm5C_associated_SNPs_51180 0 0 0 0 2 MYEOV chr11:69062962 5'GT 69062962 Upstream 66bp
chr11 120201149 120201149 1 + G T UCEC 120201146 + 120201126 120201166 41 TTTGCATGGAGGAAGAGCATCAAGAAGTACCATGCTTGGAG TTTGCATGGAGGAAGAGCATCAATAAGTACCATGCTTGGAG < 41bp 0.843431468468389 0.514037188315816 0.31348264 0.25217307 prediction 0.658788560305146 Functional Loss - TMEM136 ENSG00000181264 CDS Human protein_coding chr11:120201146 chr11:120201149 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51183 0 0 0 0 1 TMEM136 chr11:120201116 3'AG 120201116 Downstream 34bp
chr2 74041303 74041303 1 + G T LUAD 74041300 + 74041280 74041320 41 CCTACCACCAGTCTCTACTTCTGGGATGTATTACTCTGTGT CCTACCACCAGTCTCTACTTCTGTGATGTATTACTCTGTGT < 41bp 0.829388077637317 0.465779960048275 0.668687 0.27872312 prediction 0.658776155274633 Functional Loss - C2orf78 ENSG00000187833 CDS Human protein_coding chr2:74041300 chr2:74041303 nonsynonymous SNV 0.025 2 24 hm5C_associated_SNPs_51185 0 0 0 0 1 C2orf78 chr2:74041353 5'GT 74041353 Upstream 51bp
chr12 54925582 54925582 1 + G T LUAD 54925579 + 54925559 54925599 41 ATTGGGGTTATCCTCAGTTTCAGGGCCATGGCCCAAGAGGG ATTGGGGTTATCCTCAGTTTCAGTGCCATGGCCCAAGAGGG < 41bp 0.829375351603362 0.455955569237669 0.92176497 0.2137138 prediction 0.658750703206724 Functional Loss - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54925579 chr12:54925582 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_51187 0 0 1 0 2 NCKAP1L chr12:54925527 3'AG 54925527 Downstream 56bp
chr12 54925582 54925582 1 + G T LUAD 54925579 + 54925559 54925599 41 ATTGGGGTTATCCTCAGTTTCAGGGCCATGGCCCAAGAGGG ATTGGGGTTATCCTCAGTTTCAGTGCCATGGCCCAAGAGGG < 41bp 0.829375351603362 0.455955569237669 0.92176497 0.2137138 prediction 0.658750703206724 Functional Loss - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54925579 chr12:54925582 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_51187 0 0 1 0 2 NCKAP1L chr12:54925609 5'GT 54925609 Upstream 28bp
chr1 146757092 146757092 1 + A C rs13374920 146757088 + 146757068 146757108 41 AGGACAGACAGAAGAAAAGACAAGAAGCAGCTGCCAAGAGA AGGACAGACAGAAGAAAAGACAAGCAGCAGCTGCCAAGAGA < 41bp 0.829338526074728 0.457142992609849 0.44332916 0.24504843 prediction 0.658677052149456 Functional Loss - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146757088 chr1:146757092 nonsynonymous SNV 0.500 0 25 hm5C_associated_SNPs_51190 0 0 1 0 1 CHD1L chr1:146757001 3'AG 146757001 Downstream 92bp
chr19 42813749 42813749 1 + G T HNSC 42813746 + 42813726 42813766 41 TCCAGGACACCATGGATACCCAGGGACCAGTCTCCCAGCCT TCCAGGACACCATGGATACCCAGTGACCAGTCTCCCAGCCT < 41bp 0.871546626400884 0.542300658564907 0.92277795 0.05659446 prediction 0.658491935671954 Functional Loss - PRR19 ENSG00000188368 CDS Human protein_coding chr19:42813746 chr19:42813749 stopgain 0.289 0 24 hm5C_associated_SNPs_51198 0 0 0 0 1 PRR19 chr19:42813731 3'AG 42813731 Downstream 19bp
chr1 215777496 215777496 1 + G T UCEC 215777493 + 215777473 215777513 41 GGTGTCAGTGGTAACTGGATCGAGATCGCCTATGGTACGAG GGTGTCAGTGGTAACTGGATCGATATCGCCTATGGTACGAG < 41bp 0.829163486766588 0.47464832356766 0.5308238 0.061992496 prediction 0.658326973533176 Functional Loss - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215777493 chr1:215777496 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51202 0 0 1 0 1 KCTD3 chr1:215777474 3'AG 215777474 Downstream 23bp
chrX 48434708 48434708 1 + G T LUSC 48434705 + 48434685 48434725 41 GTGTCTCCCACACTTAGTCTCTGGATGGTCGTCAGATCCGT GTGTCTCCCACACTTAGTCTCTGTATGGTCGTCAGATCCGT < 41bp 0.861132738869139 0.532011122813858 0.34900206 0.18291476 prediction 0.658243232110562 Functional Loss - RBM3 ENSG00000102317 CDS Human protein_coding chrX:48434705 chrX:48434708 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_51205 0 0 1 0 2 RBM3 chrX:48434702 3'AG 48434702 Downstream 7bp
chrX 48434708 48434708 1 + G T LUSC 48434705 + 48434685 48434725 41 GTGTCTCCCACACTTAGTCTCTGGATGGTCGTCAGATCCGT GTGTCTCCCACACTTAGTCTCTGTATGGTCGTCAGATCCGT < 41bp 0.861132738869139 0.532011122813858 0.34900206 0.18291476 prediction 0.658243232110562 Functional Loss - RBM3 ENSG00000102317 CDS Human protein_coding chrX:48434705 chrX:48434708 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_51205 0 0 1 0 2 RBM3 chrX:48434807 5'GT 48434807 Upstream 100bp
chr5 156668668 156668668 1 + G T LUSC 156668665 + 156668645 156668685 41 AATCAACCCAGGCCTGGTGACTCGACTCCGGTATCCAGTTT AATCAACCCAGGCCTGGTGACTCTACTCCGGTATCCAGTTT < 41bp 0.848375319090737 0.519279374917099 0.12651128 0.44235772 prediction 0.658191888347277 Functional Loss - ITK ENSG00000113263 CDS Human protein_coding chr5:156668665 chr5:156668668 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_51206 0 0 0 0 2 ITK chr5:156668656 3'AG 156668656 Downstream 13bp
chr5 156668668 156668668 1 + G T LUSC 156668665 + 156668645 156668685 41 AATCAACCCAGGCCTGGTGACTCGACTCCGGTATCCAGTTT AATCAACCCAGGCCTGGTGACTCTACTCCGGTATCCAGTTT < 41bp 0.848375319090737 0.519279374917099 0.12651128 0.44235772 prediction 0.658191888347277 Functional Loss - ITK ENSG00000113263 CDS Human protein_coding chr5:156668665 chr5:156668668 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_51206 0 0 0 0 2 ITK chr5:156668730 5'GT 156668730 Upstream 63bp
chr12 121003261 121003261 1 + A C LUSC 121003257 + 121003237 121003277 41 TTGAGAAGAGGAAACGTCAGCGCCAAAAGAAGGCTCGGGAG TTGAGAAGAGGAAACGTCAGCGCCCAAAGAAGGCTCGGGAG < 41bp 0.829088661934717 0.430576249268009 0.19192171 0.0921886 prediction 0.658177323869433 Functional Loss - RNF10 ENSG00000022840 CDS Human protein_coding chr12:121003257 chr12:121003261 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_51207 0 0 1 0 1 RNF10 chr12:121003231 3'AG 121003231 Downstream 31bp
chr20 3725572 3725572 1 + G T SARC 3725569 + 3725549 3725589 41 GAAATGGGAGGGCGGAGACCCGGGCGTGGCCCACCAGAAGA GAAATGGGAGGGCGGAGACCCGGTCGTGGCCCACCAGAAGA < 41bp 0.829074861844504 0.46630757288949 0.90593505 0.6441399 prediction 0.658149723689007 Functional Loss - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3725569 chr20:3725572 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_51208 0 0 0 0 1 HSPA12B chr20:3725549 3'AG 3725549 Downstream 24bp
chr20 32336861 32336861 1 + G T LUSC 32336858 + 32336838 32336878 41 CCCTGGACCAGCCCATGCCCCAGGGCCCCCCACCTGTGCAG CCCTGGACCAGCCCATGCCCCAGTGCCCCCCACCTGTGCAG < 41bp 0.829074490132655 0.449392724939814 0.86544704 0.10280812 prediction 0.65814898026531 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32336858 chr20:32336861 nonsynonymous SNV 0.762 2 24 hm5C_associated_SNPs_51209 0 0 1 0 1 ZNF341 chr20:32336878 5'GT 32336878 Upstream 18bp
chr9 15458012 15458012 1 + G T UCEC 15458009 + 15457989 15458029 41 ACATTGTATCCCCTCCTTATCAAGAAGCATTGGCTATGGAC ACATTGTATCCCCTCCTTATCAATAAGCATTGGCTATGGAC < 41bp 0.829040211352965 0.486958432391135 0.91657853 0.07789469 prediction 0.658080422705929 Functional Loss - SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15458009 chr9:15458012 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51213 0 0 1 2 2 SNAPC3 chr9:15457958 3'AG 15457958 Downstream 55bp
chr9 15458012 15458012 1 + G T UCEC 15458009 + 15457989 15458029 41 ACATTGTATCCCCTCCTTATCAAGAAGCATTGGCTATGGAC ACATTGTATCCCCTCCTTATCAATAAGCATTGGCTATGGAC < 41bp 0.829040211352965 0.486958432391135 0.91657853 0.07789469 prediction 0.658080422705929 Functional Loss - SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15458009 chr9:15458012 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51213 0 0 1 2 2 SNAPC3 chr9:15458065 5'GT 15458065 Upstream 54bp
chr6 83869559 83869559 1 + G T UCEC 83869556 + 83869536 83869576 41 TGGTCTGGAGACAACGTACACAGGAGGTAATGGCTTCTCTA TGGTCTGGAGACAACGTACACAGTAGGTAATGGCTTCTCTA < 41bp 0.839968352423228 0.510930544144778 0.891704 0.25394446 prediction 0.658075616556899 Functional Loss - DOPEY1 ENSG00000083097 CDS Human protein_coding chr6:83869556 chr6:83869559 nonsynonymous SNV 0.955 3 24 hm5C_associated_SNPs_51214 0 0 1 0 1 DOPEY1 chr6:83869515 3'AG 83869515 Downstream 45bp
chr22 25598671 25598671 1 + G T UCEC 25598668 + 25598648 25598688 41 TGTACGAACTAGAGAACTTCCAAGGCAAACGCTGCGAGCTC TGTACGAACTAGAGAACTTCCAATGCAAACGCTGCGAGCTC < 41bp 0.829012906961995 0.461912397129068 0.8945337 0.43682534 prediction 0.658025813923991 Functional Loss - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25598668 chr22:25598671 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_51215 0 0 0 0 2 CRYBB3 chr22:25598641 3'AG 25598641 Downstream 31bp
chr22 25598671 25598671 1 + G T UCEC 25598668 + 25598648 25598688 41 TGTACGAACTAGAGAACTTCCAAGGCAAACGCTGCGAGCTC TGTACGAACTAGAGAACTTCCAATGCAAACGCTGCGAGCTC < 41bp 0.829012906961995 0.461912397129068 0.8945337 0.43682534 prediction 0.658025813923991 Functional Loss - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25598668 chr22:25598671 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_51215 0 0 0 0 2 CRYBB3 chr22:25598759 5'GT 25598759 Upstream 89bp
chr10 90428460 90428460 1 + G T UCEC 90428457 + 90428437 90428477 41 GGCAACAGCAGAGGAAACACCTGGGCCAGAAGAAACTTGTA GGCAACAGCAGAGGAAACACCTGTGCCAGAAGAAACTTGTA < 41bp 0.855321726349122 0.526363734381532 0.834216 0.3849911 prediction 0.657915983935179 Functional Loss - LIPF ENSG00000182333 CDS Human protein_coding chr10:90428457 chr10:90428460 nonsynonymous SNV 0.948 3 24 hm5C_associated_SNPs_51219 0 0 0 0 2 LIPF chr10:90428414 3'AG 90428414 Downstream 47bp
chr10 90428460 90428460 1 + G T UCEC 90428457 + 90428437 90428477 41 GGCAACAGCAGAGGAAACACCTGGGCCAGAAGAAACTTGTA GGCAACAGCAGAGGAAACACCTGTGCCAGAAGAAACTTGTA < 41bp 0.855321726349122 0.526363734381532 0.834216 0.3849911 prediction 0.657915983935179 Functional Loss - LIPF ENSG00000182333 CDS Human protein_coding chr10:90428457 chr10:90428460 nonsynonymous SNV 0.948 3 24 hm5C_associated_SNPs_51219 0 0 0 0 2 LIPF chr10:90428513 5'GT 90428513 Upstream 54bp
chr22 40364204 40364204 1 + A C SKCM 40364200 + 40364180 40364220 41 CCAGCACCAGCCACAGCCTCCGCAATATGCCCCAGCGCCCC CCAGCACCAGCCACAGCCTCCGCACTATGCCCCAGCGCCCC < 41bp 0.828954768664283 0.450835735543975 0.12804016 0.30923462 prediction 0.657909537328567 Functional Loss - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40364200 chr22:40364204 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_51220 0 0 0 0 1 GRAP2 chr22:40364276 5'GT 40364276 Upstream 73bp
chr6 44397592 44397592 1 + G T LUSC 44397589 + 44397569 44397609 41 TCCTGGGCAGAGCCGCTACACACGGGCCAATCTGGCTAGTA TCCTGGGCAGAGCCGCTACACACTGGCCAATCTGGCTAGTA < 41bp 0.828953876011776 0.482425568730675 0.4043798 0.20916855 prediction 0.657907752023552 Functional Loss - CDC5L ENSG00000096401 CDS Human protein_coding chr6:44397589 chr6:44397592 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_51221 0 0 1 0 1 CDC5L chr6:44397647 5'GT 44397647 Upstream 56bp
chr22 44332974 44332974 1 + A C rs78730442 44332970 + 44332950 44332990 41 GCCAGGCCTGAAGTCATCCTCAGAAGGGATGGATCCTGAGG GCCAGGCCTGAAGTCATCCTCAGACGGGATGGATCCTGAGG < 41bp 0.867923541115237 0.53898841469543 0.9071667 0.86238515 prediction 0.657870252839613 Functional Loss - PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44332970 chr22:44332974 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_51223 0 0 1 0 1 PNPLA3 chr22:44332931 3'AG 44332931 Downstream 44bp
chr16 68941453 68941453 1 + G T LUAD 68941450 + 68941430 68941470 41 CTGCCAGGAATGCGGTTTGGCAGGAGACTTCTTCATCTTCT CTGCCAGGAATGCGGTTTGGCAGTAGACTTCTTCATCTTCT < 41bp 0.828922779989372 0.47568908706046 0.4997195 0.033783913 prediction 0.657845559978744 Functional Loss - TANGO6 ENSG00000103047 CDS Human protein_coding chr16:68941450 chr16:68941453 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51224 0 0 1 0 1 TANGO6 chr16:68941478 5'GT 68941478 Upstream 26bp
chr1 43770798 43770798 1 + G T HNSC 43770795 + 43770775 43770815 41 CTGCGTGGGCGGTGCTGGGGCGCGGCGCACGCGCGTCATCT CTGCGTGGGCGGTGCTGGGGCGCTGCGCACGCGCGTCATCT < 41bp 0.828886211884021 0.475069405743034 0.8328643 0.30070585 prediction 0.657772423768042 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43770795 chr1:43770798 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_51227 0 0 0 0 1 TIE1 chr1:43770836 5'GT 43770836 Upstream 39bp
chr17 1650347 1650347 1 + G T STAD 1650345 + 1650325 1650365 41 ACACGTTGCAGAGGCTGCAACAGGTGCTGCACGCAGGCTCA ACACGTTGCAGAGGCTGCAACATGTGCTGCACGCAGGCTCA < 41bp 0.828861704878044 0.494381432549946 0.8921963 0.699399 prediction 0.657723409756088 Functional Loss - SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1650345 chr17:1650347 nonsynonymous SNV 0.033 0 23 hm5C_associated_SNPs_51228 0 0 0 0 1 SERPINF2 chr17:1650313 3'AG 1650313 Downstream 35bp
chr1 226016494 226016494 1 + G T COAD 226016491 + 226016471 226016511 41 CCATCTACTGGTTCATCTCCCGGGACAAAGAGGAAACTTTG CCATCTACTGGTTCATCTCCCGGTACAAAGAGGAAACTTTG < 41bp 0.86112643368777 0.532272283956537 0.8991422 0.71715826 prediction 0.657708299462467 Functional Loss - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226016491 chr1:226016494 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_51230 0 0 1 0 1 EPHX1 chr1:226016426 3'AG 226016426 Downstream 69bp
chrX 75396788 75396788 1 + G T LUAD 75396785 + 75396765 75396805 41 ACTATGGTACTTTGCTGCGACTAGATTGTTCTCAGGGCTAC ACTATGGTACTTTGCTGCGACTATATTGTTCTCAGGGCTAC < 41bp 0.828767739045905 0.492687872904058 0.046841472 0.05348462 prediction 0.65753547809181 Functional Loss - PBDC1 ENSG00000102390 CDS Human protein_coding chrX:75396785 chrX:75396788 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51237 0 0 1 0 2 PBDC1 chrX:75396716 3'AG 75396716 Downstream 73bp
chrX 75396788 75396788 1 + G T LUAD 75396785 + 75396765 75396805 41 ACTATGGTACTTTGCTGCGACTAGATTGTTCTCAGGGCTAC ACTATGGTACTTTGCTGCGACTATATTGTTCTCAGGGCTAC < 41bp 0.828767739045905 0.492687872904058 0.046841472 0.05348462 prediction 0.65753547809181 Functional Loss - PBDC1 ENSG00000102390 CDS Human protein_coding chrX:75396785 chrX:75396788 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51237 0 0 1 0 2 PBDC1 chrX:75396827 5'GT 75396827 Upstream 40bp
chr3 14756916 14756916 1 + G T PRAD 14756913 + 14756893 14756933 41 ACCCTGCTTTCCCTGGAATACAAGGTAGGGATGGGCAGCAC ACCCTGCTTTCCCTGGAATACAATGTAGGGATGGGCAGCAC < 41bp 0.859814140314758 0.531061181392544 0.47435185 0.237813 prediction 0.657505917844428 Functional Loss - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14756913 chr3:14756916 nonsynonymous SNV 0.954 3 24 hm5C_associated_SNPs_51240 0 0 0 0 1 C3orf20 chr3:14756916 5'GT 14756916 Upstream 1bp
chr22 40804304 40804304 1 + G T UCEC 40804301 + 40804281 40804321 41 TACTCCATCGCGGGGGATGACTCGGTGACGGAGGGGGTCAC TACTCCATCGCGGGGGATGACTCTGTGACGGAGGGGGTCAC < 41bp 0.828727446170951 0.480836421085116 0.49847066 0.40203184 prediction 0.657454892341903 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40804301 chr22:40804304 synonymous SNV . 0 24 hm5C_associated_SNPs_51241 0 0 1 0 1 SGSM3 chr22:40804281 3'AG 40804281 Downstream 24bp
chr8 99161174 99161174 1 + G T OV 99161171 + 99161151 99161191 41 ACTGGTGAAGATCGACTAGGCTGGGGAAGTGGCTGGGATGT ACTGGTGAAGATCGACTAGGCTGTGGAAGTGGCTGGGATGT < 41bp 0.869701283787149 0.540982367290076 0.6155522 0.21824464 prediction 0.657437832994146 Functional Loss - POP1 ENSG00000104356 CDS Human protein_coding chr8:99161171 chr8:99161174 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51242 0 0 0 0 1 POP1 chr8:99161234 5'GT 99161234 Upstream 61bp
chr9 95784668 95784668 1 + A C PRAD 95784664 + 95784644 95784684 41 CACCGAAGGCAGTTCGGGTGCAGCAGGGGTAAGTGCCCCAT CACCGAAGGCAGTTCGGGTGCAGCCGGGGTAAGTGCCCCAT < 41bp 0.87810163389252 0.549389602427252 0.85176986 0.8262031 prediction 0.657424062930538 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95784664 chr9:95784668 synonymous SNV . 0 25 hm5C_associated_SNPs_51243 0 0 0 0 2 FGD3 chr9:95784609 3'AG 95784609 Downstream 60bp
chr9 95784668 95784668 1 + A C PRAD 95784664 + 95784644 95784684 41 CACCGAAGGCAGTTCGGGTGCAGCAGGGGTAAGTGCCCCAT CACCGAAGGCAGTTCGGGTGCAGCCGGGGTAAGTGCCCCAT < 41bp 0.87810163389252 0.549389602427252 0.85176986 0.8262031 prediction 0.657424062930538 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95784664 chr9:95784668 synonymous SNV . 0 25 hm5C_associated_SNPs_51243 0 0 0 0 2 FGD3 chr9:95784671 5'GT 95784671 Upstream 4bp
chr11 74914356 74914356 1 + G T UCEC 74914353 + 74914333 74914373 41 TGAGCACCACCTCCCTCAGCCTGGATGCCCAGCCCCGTGAT TGAGCACCACCTCCCTCAGCCTGTATGCCCAGCCCCGTGAT < 41bp 0.828659301584683 0.474704595824016 0.40572304 0.16554835 prediction 0.657318603169365 Functional Loss - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74914353 chr11:74914356 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51247 0 0 1 0 1 SLCO2B1 chr11:74914352 3'AG 74914352 Downstream 5bp
chr1 174973839 174973839 1 + G T LUAD 174973836 + 174973816 174973856 41 GCCCTTACAGCTGAAAAATCCAAGATTGAGACAGAAATCAA GCCCTTACAGCTGAAAAATCCAATATTGAGACAGAAATCAA < 41bp 0.828646327089149 0.489825576563885 0.17731625 0.10494137 prediction 0.657292654178298 Functional Loss - CACYBP ENSG00000116161 CDS Human protein_coding chr1:174973836 chr1:174973839 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_51250 0 0 1 0 1 CACYBP chr1:174973750 3'AG 174973750 Downstream 90bp
chr21 41137531 41137531 1 + G T LIHC 41137528 + 41137508 41137548 41 AGTCCTGAAGGGCTCCCAGGCTCGCTTCAACTGCACCGTCT AGTCCTGAAGGGCTCCCAGGCTCTCTTCAACTGCACCGTCT < 41bp 0.828590955972922 0.469023381458861 0.22448114 0.07337016 prediction 0.657181911945844 Functional Loss - IGSF5 ENSG00000183067 CDS Human protein_coding chr21:41137528 chr21:41137531 nonsynonymous SNV 0.977 3 24 hm5C_associated_SNPs_51252 0 0 0 0 1 IGSF5 chr21:41137462 3'AG 41137462 Downstream 70bp
chr19 10221461 10221461 1 + G T STAD 10221458 + 10221438 10221478 41 TCCCTTCAAGGACGGCGAGCCTGGAGTTGGGTGAGGACGAT TCCCTTCAAGGACGGCGAGCCTGTAGTTGGGTGAGGACGAT < 41bp 0.828590416358828 0.475942073315535 0.44165725 0.08330473 prediction 0.657180832717656 Functional Loss - PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10221458 chr19:10221461 stopgain 0.000 0 24 hm5C_associated_SNPs_51253 0 0 1 0 1 PPAN;PPAN-P2RY11 chr19:10221373 3'AG 10221373 Downstream 89bp
chr11 18723200 18723200 1 + G T OV 18723197 + 18723177 18723217 41 CACTGGCTCTTCGGACAGGTCTGGTGATGGCAGCGCTGTCG CACTGGCTCTTCGGACAGGTCTGTTGATGGCAGCGCTGTCG < 41bp 0.828549086928751 0.459815494542155 0.5528302 0.47932735 prediction 0.657098173857501 Functional Loss - TMEM86A ENSG00000151117 CDS Human protein_coding chr11:18723197 chr11:18723200 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_51255 0 0 0 0 1 TMEM86A chr11:18723120 3'AG 18723120 Downstream 81bp
chr8 182340 182340 1 + A C rs17744517 182336 + 182316 182356 41 TTTTTCTCTGCCTCCCCTCCCTGCACGTACGGGCCCCGCCC TTTTTCTCTGCCTCCCCTCCCTGCCCGTACGGGCCCCGCCC < 41bp 0.828537905820266 0.495530362119003 0.15279445 0.032824606 prediction 0.657075811640532 Functional Loss - ZNF596 ENSG00000172748 UTR5 Human protein_coding chr8:182336 chr8:182340 . . 0 25 hm5C_associated_SNPs_51256 0 0 0 0 1 ZNF596 chr8:182415 5'GT 182415 Upstream 76bp
chr9 27206697 27206697 1 + G T GBM 27206694 + 27206674 27206714 41 ACTGGAATGACATCAAATTTCAAGATGTGATTGGGGAGGGC ACTGGAATGACATCAAATTTCAATATGTGATTGGGGAGGGC < 41bp 0.849394030028964 0.520884106476922 0.356228 0.14455557 prediction 0.657019847104084 Functional Loss - TEK ENSG00000120156 CDS Human protein_coding chr9:27206694 chr9:27206697 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51261 0 0 0 0 1 TEK chr9:27206790 5'GT 27206790 Upstream 94bp
chr6 36179103 36179103 1 + G T ACC 36179100 + 36179080 36179120 41 AGGTGCAGCTGAAGGAGCTGCTGGAGAAACTGGACCTGGTG AGGTGCAGCTGAAGGAGCTGCTGTAGAAACTGGACCTGGTG < 41bp 0.852238997365077 0.523760869201272 0.7614774 0.47738314 prediction 0.65695625632761 Functional Loss - BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36179100 chr6:36179103 stopgain 1.000 1 24 hm5C_associated_SNPs_51262 0 0 1 0 1 BRPF3 chr6:36179035 3'AG 36179035 Downstream 69bp
chr17 42429421 42429421 1 + G T PAAD 42429419 + 42429399 42429439 41 ACCACCAGCACTGCTGCCCCCAGGGCTACACGTGTGTAGCT ACCACCAGCACTGCTGCCCCCATGGCTACACGTGTGTAGCT < 41bp 0.828473277990369 0.497134075763536 0.8763882 0.14197937 prediction 0.656946555980737 Functional Loss - GRN ENSG00000030582 CDS Human protein_coding chr17:42429419 chr17:42429421 nonsynonymous SNV 0.726 0 23 hm5C_associated_SNPs_51263 0 0 1 0 1 GRN chr17:42429383 3'AG 42429383 Downstream 39bp
chr5 161113294 161113294 1 + A C HNSC 161113290 + 161113270 161113310 41 GGCAACTTCTACTCAGAAAACGTCAGTCGGATCCTGGACAA GGCAACTTCTACTCAGAAAACGTCCGTCGGATCCTGGACAA < 41bp 0.884479773806324 0.55602360178767 0.17772725 0.21286258 prediction 0.656912344037309 Functional Loss - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161113290 chr5:161113294 nonsynonymous SNV 0.949 2 25 hm5C_associated_SNPs_51265 0 0 0 0 2 GABRA6 chr5:161113236 3'AG 161113236 Downstream 59bp
chr5 161113294 161113294 1 + A C HNSC 161113290 + 161113270 161113310 41 GGCAACTTCTACTCAGAAAACGTCAGTCGGATCCTGGACAA GGCAACTTCTACTCAGAAAACGTCCGTCGGATCCTGGACAA < 41bp 0.884479773806324 0.55602360178767 0.17772725 0.21286258 prediction 0.656912344037309 Functional Loss - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161113290 chr5:161113294 nonsynonymous SNV 0.949 2 25 hm5C_associated_SNPs_51265 0 0 0 0 2 GABRA6 chr5:161113354 5'GT 161113354 Upstream 61bp
chr20 31424572 31424572 1 + G T UCEC 31424569 + 31424549 31424589 41 CTGTGGCTGCCAGACAAGGTCAAGAAACTGCAGTGGCTCCT CTGTGGCTGCCAGACAAGGTCAATAAACTGCAGTGGCTCCT < 41bp 0.828448476625737 0.48788156888882 0.7741688 0.28834414 prediction 0.656896953251474 Functional Loss - MAPRE1 ENSG00000101367 CDS Human protein_coding chr20:31424569 chr20:31424572 stopgain 1.000 1 24 hm5C_associated_SNPs_51266 0 0 1 0 1 MAPRE1 chr20:31424647 5'GT 31424647 Upstream 76bp
chr1 47278210 47278210 1 + A C SKCM 47278206 + 47278186 47278226 41 TTGAGGGGCCCAAGTGGTTGCAGCACCGCAAGCTGCTCACA TTGAGGGGCCCAAGTGGTTGCAGCCCCGCAAGCTGCTCACA < 41bp 0.828436166706572 0.447159593182123 0.5018191 0.44877276 prediction 0.656872333413143 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47278206 chr1:47278210 nonsynonymous SNV 0.274 4 25 hm5C_associated_SNPs_51267 0 0 0 0 2 CYP4B1 chr1:47278168 3'AG 47278168 Downstream 43bp
chr1 47278210 47278210 1 + A C SKCM 47278206 + 47278186 47278226 41 TTGAGGGGCCCAAGTGGTTGCAGCACCGCAAGCTGCTCACA TTGAGGGGCCCAAGTGGTTGCAGCCCCGCAAGCTGCTCACA < 41bp 0.828436166706572 0.447159593182123 0.5018191 0.44877276 prediction 0.656872333413143 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47278206 chr1:47278210 nonsynonymous SNV 0.274 4 25 hm5C_associated_SNPs_51267 0 0 0 0 2 CYP4B1 chr1:47278295 5'GT 47278295 Upstream 86bp
chr17 15878047 15878047 1 + G T LIHC 15878044 + 15878024 15878064 41 AGAGGGGTCATTGCTGTCCTCTGGGTCCTTGCCTTTGGCAT AGAGGGGTCATTGCTGTCCTCTGTGTCCTTGCCTTTGGCAT < 41bp 0.828411394779657 0.487942567238737 0.51813436 0.09032273 prediction 0.656822789559315 Functional Loss - ADORA2B ENSG00000170425 CDS Human protein_coding chr17:15878044 chr17:15878047 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_51269 0 0 1 0 1 ADORA2B chr17:15877993 3'AG 15877993 Downstream 55bp
chr16 84801883 84801883 1 + G T UCEC 84801880 + 84801860 84801900 41 CAGTTGGATATCCAGTCAGACAAGATACGCACAGTCCAGGA CAGTTGGATATCCAGTCAGACAATATACGCACAGTCCAGGA < 41bp 0.828406656602385 0.477208978224267 0.32709044 0.10952571 prediction 0.656813313204769 Functional Loss - USP10 ENSG00000103194 CDS Human protein_coding chr16:84801880 chr16:84801883 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_51270 0 0 1 0 2 USP10 chr16:84801799 3'AG 84801799 Downstream 85bp
chr16 84801883 84801883 1 + G T UCEC 84801880 + 84801860 84801900 41 CAGTTGGATATCCAGTCAGACAAGATACGCACAGTCCAGGA CAGTTGGATATCCAGTCAGACAATATACGCACAGTCCAGGA < 41bp 0.828406656602385 0.477208978224267 0.32709044 0.10952571 prediction 0.656813313204769 Functional Loss - USP10 ENSG00000103194 CDS Human protein_coding chr16:84801880 chr16:84801883 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_51270 0 0 1 0 2 USP10 chr16:84801964 5'GT 84801964 Upstream 82bp
chr12 31254893 31254893 1 + G T LUAD 31254890 + 31254870 31254910 41 ACTGGGAGAAGGGTGGCCTGCTGGGCCGTCTGGCTGCCAGG ACTGGGAGAAGGGTGGCCTGCTGTGCCGTCTGGCTGCCAGG < 41bp 0.855362183685161 0.52699906551052 0.4216478 0.092960656 prediction 0.656726236349283 Functional Loss - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31254890 chr12:31254893 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_51273 0 0 0 0 1 DDX11 chr12:31254916 5'GT 31254916 Upstream 24bp
chr4 57891066 57891066 1 + G T LUAD 57891063 + 57891043 57891083 41 TTTTAAAAGGTATCGGCTAACAAGGGTGAAATTGGTGATGC TTTTAAAAGGTATCGGCTAACAATGGTGAAATTGGTGATGC < 41bp 0.83969424102254 0.511338185955344 0.9201225 0.2085582 prediction 0.656712110134392 Functional Loss - POLR2B ENSG00000047315 CDS Human protein_coding chr4:57891063 chr4:57891066 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_51274 0 0 1 0 2 POLR2B chr4:57891052 3'AG 57891052 Downstream 15bp
chr4 57891066 57891066 1 + G T LUAD 57891063 + 57891043 57891083 41 TTTTAAAAGGTATCGGCTAACAAGGGTGAAATTGGTGATGC TTTTAAAAGGTATCGGCTAACAATGGTGAAATTGGTGATGC < 41bp 0.83969424102254 0.511338185955344 0.9201225 0.2085582 prediction 0.656712110134392 Functional Loss - POLR2B ENSG00000047315 CDS Human protein_coding chr4:57891063 chr4:57891066 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_51274 0 0 1 0 2 POLR2B chr4:57891165 5'GT 57891165 Upstream 100bp
chr6 117248279 117248279 1 + G T PAAD 117248276 + 117248256 117248296 41 GCCGAGGAAGTGTCATTAACCAAGGACCAATGGCAGGGAGG GCCGAGGAAGTGTCATTAACCAATGACCAATGGCAGGGAGG < 41bp 0.828345647597759 0.46081275826994 0.76302385 0.14750361 prediction 0.656691295195517 Functional Loss - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117248276 chr6:117248279 stopgain 1.000 0 24 hm5C_associated_SNPs_51275 0 0 0 0 1 RFX6 chr6:117248190 3'AG 117248190 Downstream 90bp
chr19 17534842 17534842 1 + A C LUSC 17534838 + 17534818 17534858 41 TGGATGGGGTTCCCTTCACACTCCACCCACGATTTGAGGGC TGGATGGGGTTCCCTTCACACTCCCCCCACGATTTGAGGGC < 41bp 0.828312514877701 0.420079049257525 0.89443505 0.08974442 prediction 0.656625029755401 Functional Loss - MVB12A ENSG00000141971 CDS Human protein_coding chr19:17534838 chr19:17534842 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_51278 0 0 1 0 2 MVB12A chr19:17534815 3'AG 17534815 Downstream 28bp
chr19 17534842 17534842 1 + A C LUSC 17534838 + 17534818 17534858 41 TGGATGGGGTTCCCTTCACACTCCACCCACGATTTGAGGGC TGGATGGGGTTCCCTTCACACTCCCCCCACGATTTGAGGGC < 41bp 0.828312514877701 0.420079049257525 0.89443505 0.08974442 prediction 0.656625029755401 Functional Loss - MVB12A ENSG00000141971 CDS Human protein_coding chr19:17534838 chr19:17534842 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_51278 0 0 1 0 2 MVB12A chr19:17534876 5'GT 17534876 Upstream 35bp
chr19 14581102 14581102 1 + G T UCEC 14581099 + 14581079 14581119 41 GGACTGGGTGTGCTGCTCTACGAGATGCTGGTTGGCGAGGT GGACTGGGTGTGCTGCTCTACGATATGCTGGTTGGCGAGGT < 41bp 0.85225701229273 0.523981001491052 0.1523793 0.023871154 prediction 0.656552021603355 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14581099 chr19:14581102 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_51279 0 0 1 0 1 PKN1 chr19:14581117 5'GT 14581117 Upstream 16bp
chr5 74647364 74647364 1 + A C UCEC 74647360 + 74647340 74647380 41 AGTACTGGTGACACAGGAACCTGAAATTGAACTTCCCAGGG AGTACTGGTGACACAGGAACCTGACATTGAACTTCCCAGGG < 41bp 0.828259020056293 0.457730179155258 0.11746943 0.0826281 prediction 0.656518040112585 Functional Loss - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74647360 chr5:74647364 nonsynonymous SNV 0.972 0 25 hm5C_associated_SNPs_51280 0 0 1 0 1 HMGCR chr5:74647427 5'GT 74647427 Upstream 64bp
chr9 130487128 130487128 1 + G T LUSC 130487125 + 130487105 130487145 41 TCAGGACGAGGGCGCCAACACGCGCATGGGCCTGCTGCAGG TCAGGACGAGGGCGCCAACACGCTCATGGGCCTGCTGCAGG < 41bp 0.870691356883377 0.542469228107799 0.11196557 0.027999371 prediction 0.656444257551155 Functional Loss - TTC16 ENSG00000167094 CDS Human protein_coding chr9:130487125 chr9:130487128 nonsynonymous SNV 0.871 2 24 hm5C_associated_SNPs_51284 0 0 0 0 2 TTC16 chr9:130487035 3'AG 130487035 Downstream 94bp
chr9 130487128 130487128 1 + G T LUSC 130487125 + 130487105 130487145 41 TCAGGACGAGGGCGCCAACACGCGCATGGGCCTGCTGCAGG TCAGGACGAGGGCGCCAACACGCTCATGGGCCTGCTGCAGG < 41bp 0.870691356883377 0.542469228107799 0.11196557 0.027999371 prediction 0.656444257551155 Functional Loss - TTC16 ENSG00000167094 CDS Human protein_coding chr9:130487125 chr9:130487128 nonsynonymous SNV 0.871 2 24 hm5C_associated_SNPs_51284 0 0 0 0 2 TTC16 chr9:130487176 5'GT 130487176 Upstream 49bp
chr1 186901923 186901923 1 + G T LUAD 186901920 + 186901900 186901940 41 TGTGGTAGCCATATTGGGTTCAGGTGGGGGTTTCCGAGCCA TGTGGTAGCCATATTGGGTTCAGTTGGGGGTTTCCGAGCCA < 41bp 0.828214902535111 0.471978557889286 0.79545116 0.5262592 prediction 0.656429805070222 Functional Loss - PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186901920 chr1:186901923 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51285 0 0 0 0 1 PLA2G4A chr1:186901895 3'AG 186901895 Downstream 29bp
chr19 45515474 45515474 1 + G T LUAD 45515471 + 45515451 45515491 41 CGCTACGAGTGCGAGGGCCGCTCGGCCGGCAGCATCCTTGG CGCTACGAGTGCGAGGGCCGCTCTGCCGGCAGCATCCTTGG < 41bp 0.863048422117589 0.534859566733153 0.8674259 0.44247514 prediction 0.656377710768871 Functional Loss - RELB ENSG00000104856 CDS Human protein_coding chr19:45515471 chr19:45515474 synonymous SNV . 0 24 hm5C_associated_SNPs_51286 0 0 0 0 1 RELB chr19:45515534 5'GT 45515534 Upstream 61bp
chr18 28913595 28913595 1 + A C UCEC 28913591 + 28913571 28913611 41 TTGCTGTAAGAGGCTCTGACCGAGATGGCGGGGCAGATGGC TTGCTGTAAGAGGCTCTGACCGAGCTGGCGGGGCAGATGGC < 41bp 0.828180711900416 0.45736362719298 0.8590728 0.7905654 prediction 0.656361423800832 Functional Loss - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28913591 chr18:28913595 nonsynonymous SNV 0.851 2 25 hm5C_associated_SNPs_51289 0 0 0 0 2 DSG1 chr18:28913552 3'AG 28913552 Downstream 44bp
chr18 28913595 28913595 1 + A C UCEC 28913591 + 28913571 28913611 41 TTGCTGTAAGAGGCTCTGACCGAGATGGCGGGGCAGATGGC TTGCTGTAAGAGGCTCTGACCGAGCTGGCGGGGCAGATGGC < 41bp 0.828180711900416 0.45736362719298 0.8590728 0.7905654 prediction 0.656361423800832 Functional Loss - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28913591 chr18:28913595 nonsynonymous SNV 0.851 2 25 hm5C_associated_SNPs_51289 0 0 0 0 2 DSG1 chr18:28913686 5'GT 28913686 Upstream 92bp
chr2 96071517 96071517 1 + G T LUSC 96071514 + 96071494 96071534 41 CGAAGACGATGACGCAGTTCCTAGAGCAGGGAGAGGCCACC CGAAGACGATGACGCAGTTCCTATAGCAGGGAGAGGCCACC < 41bp 0.855798063018751 0.52761838778919 0.4974809 0.56560624 prediction 0.656359350459123 Functional Loss - FAHD2A ENSG00000115042 CDS Human protein_coding chr2:96071514 chr2:96071517 stopgain 0.972 1 24 hm5C_associated_SNPs_51290 0 0 0 0 1 FAHD2A chr2:96071551 5'GT 96071551 Upstream 35bp
chr19 19650526 19650526 1 + G T BLCA 19650523 + 19650503 19650543 41 AGGAGCCAATGGCGACTGCACTGGGCCTGGAAAGACGGTCC AGGAGCCAATGGCGACTGCACTGTGCCTGGAAAGACGGTCC < 41bp 0.868401922506011 0.540226204497224 0.32619 0.035347283 prediction 0.656351436017574 Functional Loss - CILP2 ENSG00000160161 CDS Human protein_coding chr19:19650523 chr19:19650526 nonsynonymous SNV 0.006 2 24 hm5C_associated_SNPs_51291 0 0 0 0 2 CILP2 chr19:19650488 3'AG 19650488 Downstream 39bp
chr19 19650526 19650526 1 + G T BLCA 19650523 + 19650503 19650543 41 AGGAGCCAATGGCGACTGCACTGGGCCTGGAAAGACGGTCC AGGAGCCAATGGCGACTGCACTGTGCCTGGAAAGACGGTCC < 41bp 0.868401922506011 0.540226204497224 0.32619 0.035347283 prediction 0.656351436017574 Functional Loss - CILP2 ENSG00000160161 CDS Human protein_coding chr19:19650523 chr19:19650526 nonsynonymous SNV 0.006 2 24 hm5C_associated_SNPs_51291 0 0 0 0 2 CILP2 chr19:19650586 5'GT 19650586 Upstream 61bp
chr16 76523735 76523735 1 + G T LUAD 76523732 + 76523712 76523752 41 ACCGTGCAGAGCACTGTGAACAGGAGTTTACTTATTACTGC ACCGTGCAGAGCACTGTGAACAGTAGTTTACTTATTACTGC < 41bp 0.85377234153816 0.525604424236925 0.7200821 0.098721415 prediction 0.656335834602469 Functional Loss - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76523732 chr16:76523735 stopgain 0.902 0 24 hm5C_associated_SNPs_51294 0 0 0 0 1 CNTNAP4 chr16:76523780 5'GT 76523780 Upstream 46bp
chr3 89390144 89390144 1 + A C UCEC 89390140 + 89390120 89390160 41 GCCCGCCTCACAGTTCTACTCAGGAAGATGGTTCAATGAAC GCCCGCCTCACAGTTCTACTCAGGCAGATGGTTCAATGAAC < 41bp 0.828147842995941 0.466695499262722 0.82957184 0.5760915 prediction 0.656295685991882 Functional Loss - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89390140 chr3:89390144 nonsynonymous SNV 0.990 1 25 hm5C_associated_SNPs_51299 0 0 0 0 2 EPHA3 chr3:89390066 3'AG 89390066 Downstream 79bp
chr3 89390144 89390144 1 + A C UCEC 89390140 + 89390120 89390160 41 GCCCGCCTCACAGTTCTACTCAGGAAGATGGTTCAATGAAC GCCCGCCTCACAGTTCTACTCAGGCAGATGGTTCAATGAAC < 41bp 0.828147842995941 0.466695499262722 0.82957184 0.5760915 prediction 0.656295685991882 Functional Loss - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89390140 chr3:89390144 nonsynonymous SNV 0.990 1 25 hm5C_associated_SNPs_51299 0 0 0 0 2 EPHA3 chr3:89390221 5'GT 89390221 Upstream 78bp
chr7 73461081 73461081 1 + G T UCEC 73461078 + 73461058 73461098 41 GTCCCACTGGGGTATCCCATCAAGGCCCCCAAGCTGCCTGG GTCCCACTGGGGTATCCCATCAATGCCCCCAAGCTGCCTGG < 41bp 0.832005128607966 0.503885852175721 0.9128336 0.19456992 prediction 0.65623855286449 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73461078 chr7:73461081 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_51300 0 0 0 0 2 ELN chr7:73461026 3'AG 73461026 Downstream 56bp
chr7 73461081 73461081 1 + G T UCEC 73461078 + 73461058 73461098 41 GTCCCACTGGGGTATCCCATCAAGGCCCCCAAGCTGCCTGG GTCCCACTGGGGTATCCCATCAATGCCCCCAAGCTGCCTGG < 41bp 0.832005128607966 0.503885852175721 0.9128336 0.19456992 prediction 0.65623855286449 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73461078 chr7:73461081 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_51300 0 0 0 0 2 ELN chr7:73461097 5'GT 73461097 Upstream 17bp
chr14 93273266 93273266 1 + G T UCEC 93273263 + 93273243 93273283 41 ATGAAGTTCAGTCTTTAAATCAAGAAATGGCCTCGTTACTC ATGAAGTTCAGTCTTTAAATCAATAAATGGCCTCGTTACTC < 41bp 0.828118065119617 0.488887439466779 0.6135157 0.18556058 prediction 0.656236130239235 Functional Loss - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93273263 chr14:93273266 stopgain 0.996 1 24 hm5C_associated_SNPs_51301 0 0 1 0 1 GOLGA5 chr14:93273308 5'GT 93273308 Upstream 43bp
chr17 32583311 32583311 1 + G T SARC 32583308 + 32583288 32583328 41 AAGATCTCAGTGCAGAGGCTCGCGAGCTATAGAAGAATCAC AAGATCTCAGTGCAGAGGCTCGCTAGCTATAGAAGAATCAC < 41bp 0.846766130943292 0.518682760355078 0.3203447 0.04480028 prediction 0.656166741176427 Functional Loss - CCL2 ENSG00000108691 CDS Human protein_coding chr17:32583308 chr17:32583311 synonymous SNV . 0 24 hm5C_associated_SNPs_51303 0 0 0 0 2 CCL2 chr17:32583241 3'AG 32583241 Downstream 71bp
chr17 32583311 32583311 1 + G T SARC 32583308 + 32583288 32583328 41 AAGATCTCAGTGCAGAGGCTCGCGAGCTATAGAAGAATCAC AAGATCTCAGTGCAGAGGCTCGCTAGCTATAGAAGAATCAC < 41bp 0.846766130943292 0.518682760355078 0.3203447 0.04480028 prediction 0.656166741176427 Functional Loss - CCL2 ENSG00000108691 CDS Human protein_coding chr17:32583308 chr17:32583311 synonymous SNV . 0 24 hm5C_associated_SNPs_51303 0 0 0 0 2 CCL2 chr17:32583358 5'GT 32583358 Upstream 48bp
chr2 206590770 206590770 1 + G T HNSC 206590767 + 206590747 206590787 41 CTCCATGGTGATGACAATGGCTGGACCCCCAACTTGGATTC CTCCATGGTGATGACAATGGCTGTACCCCCAACTTGGATTC < 41bp 0.856314816337232 0.528233805564785 0.88523364 0.43213245 prediction 0.656162021544894 Functional Loss - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206590767 chr2:206590770 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_51304 0 0 1 0 1 NRP2 chr2:206590806 5'GT 206590806 Upstream 37bp
chr3 136047665 136047665 1 + G T UCEC 136047662 + 136047642 136047682 41 GCTGCTCAGGCAGAGTACATCGAGAAGTTTGCCAACCCTTT GCTGCTCAGGCAGAGTACATCGATAAGTTTGCCAACCCTTT < 41bp 0.828050409556657 0.471263661097228 0.87852 0.28979513 prediction 0.656100819113315 Functional Loss - PCCB ENSG00000114054 CDS Human protein_coding chr3:136047662 chr3:136047665 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_51306 0 0 1 0 2 PCCB chr3:136047600 3'AG 136047600 Downstream 66bp
chr3 136047665 136047665 1 + G T UCEC 136047662 + 136047642 136047682 41 GCTGCTCAGGCAGAGTACATCGAGAAGTTTGCCAACCCTTT GCTGCTCAGGCAGAGTACATCGATAAGTTTGCCAACCCTTT < 41bp 0.828050409556657 0.471263661097228 0.87852 0.28979513 prediction 0.656100819113315 Functional Loss - PCCB ENSG00000114054 CDS Human protein_coding chr3:136047662 chr3:136047665 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_51306 0 0 1 0 2 PCCB chr3:136047699 5'GT 136047699 Upstream 35bp
chr1 198668756 198668756 1 + G T UCEC 198668753 + 198668733 198668773 41 AGACTCGCAGACGCCCTCTGCTGGAACTGACACGCAGACAT AGACTCGCAGACGCCCTCTGCTGTAACTGACACGCAGACAT < 41bp 0.836890703318163 0.50885534937146 0.78209895 0.31143203 prediction 0.656070707893406 Functional Loss - PTPRC ENSG00000081237 CDS Human protein_coding chr1:198668753 chr1:198668756 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_51307 0 0 0 1 2 PTPRC chr1:198668693 3'AG 198668693 Downstream 64bp
chr1 198668756 198668756 1 + G T UCEC 198668753 + 198668733 198668773 41 AGACTCGCAGACGCCCTCTGCTGGAACTGACACGCAGACAT AGACTCGCAGACGCCCTCTGCTGTAACTGACACGCAGACAT < 41bp 0.836890703318163 0.50885534937146 0.78209895 0.31143203 prediction 0.656070707893406 Functional Loss - PTPRC ENSG00000081237 CDS Human protein_coding chr1:198668753 chr1:198668756 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_51307 0 0 0 1 2 PTPRC chr1:198668833 5'GT 198668833 Upstream 78bp
chr7 143027921 143027921 1 + A C UCEC 143027917 + 143027897 143027937 41 TACTTTGCTGTTCGGAACTACTGGAGAGGATTCTTTGCAGC TACTTTGCTGTTCGGAACTACTGGCGAGGATTCTTTGCAGC < 41bp 0.828024942464599 0.442186539264766 0.46714407 0.2302599 prediction 0.656049884929198 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143027917 chr7:143027921 synonymous SNV . 0 25 hm5C_associated_SNPs_51308 0 0 0 3 1 CLCN1 chr7:143027865 3'AG 143027865 Downstream 57bp
chr1 6648903 6648903 1 + A C KIRC 6648899 + 6648879 6648919 41 AGTGTGGCTACAAGTTTACCCGACAGGTAGGCCAGGGCCTG AGTGTGGCTACAAGTTTACCCGACCGGTAGGCCAGGGCCTG < 41bp 0.827991594590031 0.466024006283151 0.27253813 0.24106994 prediction 0.655983189180062 Functional Loss - ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6648899 chr1:6648903 nonsynonymous SNV 0.977 3 25 hm5C_associated_SNPs_51311 0 0 0 0 2 ZBTB48 chr1:6648816 3'AG 6648816 Downstream 88bp
chr1 6648903 6648903 1 + A C KIRC 6648899 + 6648879 6648919 41 AGTGTGGCTACAAGTTTACCCGACAGGTAGGCCAGGGCCTG AGTGTGGCTACAAGTTTACCCGACCGGTAGGCCAGGGCCTG < 41bp 0.827991594590031 0.466024006283151 0.27253813 0.24106994 prediction 0.655983189180062 Functional Loss - ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6648899 chr1:6648903 nonsynonymous SNV 0.977 3 25 hm5C_associated_SNPs_51311 0 0 0 0 2 ZBTB48 chr1:6648904 5'GT 6648904 Upstream 2bp
chr6 90315799 90315799 1 + G T LUSC 90315796 + 90315776 90315816 41 AGCCAAGCTGCTCATTAAAGCAGGAGCCAACGTGCTTGCCA AGCCAAGCTGCTCATTAAAGCAGTAGCCAACGTGCTTGCCA < 41bp 0.853592817260984 0.525606678795883 0.9117335 0.8302076 prediction 0.655972276930201 Functional Loss - ANKRD6 ENSG00000135299 CDS Human protein_coding chr6:90315796 chr6:90315799 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_51312 0 0 0 0 2 ANKRD6 chr6:90315726 3'AG 90315726 Downstream 74bp
chr6 90315799 90315799 1 + G T LUSC 90315796 + 90315776 90315816 41 AGCCAAGCTGCTCATTAAAGCAGGAGCCAACGTGCTTGCCA AGCCAAGCTGCTCATTAAAGCAGTAGCCAACGTGCTTGCCA < 41bp 0.853592817260984 0.525606678795883 0.9117335 0.8302076 prediction 0.655972276930201 Functional Loss - ANKRD6 ENSG00000135299 CDS Human protein_coding chr6:90315796 chr6:90315799 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_51312 0 0 0 0 2 ANKRD6 chr6:90315824 5'GT 90315824 Upstream 26bp
chr1 223940648 223940648 1 + G T READ 223940645 + 223940625 223940665 41 GGCTCCACCGCGGGAGGTTGCAGGAACTACCCGAGTAAGGG GGCTCCACCGCGGGAGGTTGCAGTAACTACCCGAGTAAGGG < 41bp 0.850771449739488 0.522789801282344 0.9005593 0.71047586 prediction 0.655963296914289 Functional Loss - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223940645 chr1:223940648 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_51313 0 0 1 0 1 CAPN2 chr1:223940658 5'GT 223940658 Upstream 11bp
chr3 127327356 127327356 1 + G T SARC 127327353 + 127327333 127327373 41 GACAGCTGCAAGCCAGGAGACGAGATAGTAAGTGGCCGGGG GACAGCTGCAAGCCAGGAGACGATATAGTAAGTGGCCGGGG < 41bp 0.861228556850578 0.533271934650104 0.49375883 0.09225047 prediction 0.655913244400948 Functional Loss - MCM2 ENSG00000073111 CDS Human protein_coding chr3:127327353 chr3:127327356 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_51314 0 0 1 0 1 MCM2 chr3:127327359 5'GT 127327359 Upstream 4bp
chr1 207649619 207649619 1 + G T LIHC 207649616 + 207649596 207649636 41 CCTCCGCCTAAGACCCCTAACGGGAACCATACTGGTGGAAA CCTCCGCCTAAGACCCCTAACGGTAACCATACTGGTGGAAA < 41bp 0.827946619097878 0.470995775938603 0.89284754 0.3673376 prediction 0.655893238195757 Functional Loss - CR2 ENSG00000117322 CDS Human protein_coding chr1:207649616 chr1:207649619 synonymous SNV . 0 24 hm5C_associated_SNPs_51315 0 0 0 0 1 CR2 chr1:207649579 3'AG 207649579 Downstream 41bp
chr1 207649620 207649620 1 + A C LIHC 207649616 + 207649596 207649636 41 CCTCCGCCTAAGACCCCTAACGGGAACCATACTGGTGGAAA CCTCCGCCTAAGACCCCTAACGGGCACCATACTGGTGGAAA < 41bp 0.827946619097878 0.455660661154255 0.89284754 0.8648938 prediction 0.655893238195757 Functional Loss - CR2 ENSG00000117322 CDS Human protein_coding chr1:207649616 chr1:207649620 nonsynonymous SNV 0.688 0 25 hm5C_associated_SNPs_51316 0 0 0 0 1 CR2 chr1:207649579 3'AG 207649579 Downstream 42bp
chr12 97337517 97337517 1 + G T HNSC 97337514 + 97337494 97337534 41 AGAAAATATATATGGGAAAACAGGAATCTAAAGACTCCTTC AGAAAATATATATGGGAAAACAGTAATCTAAAGACTCCTTC < 41bp 0.828928267944496 0.5009943984924 0.39922196 0.27409074 prediction 0.655867738904192 Functional Loss - NEDD1 ENSG00000139350 CDS Human protein_coding chr12:97337514 chr12:97337517 stopgain 0.982 1 24 hm5C_associated_SNPs_51317 0 0 1 0 1 NEDD1 chr12:97337540 5'GT 97337540 Upstream 24bp
chr14 56755202 56755202 1 + G T COAD 56755199 + 56755179 56755219 41 ATCGACTTCGTTGTCACAGACACGATTTCTGGCAGCCAGAA ATCGACTTCGTTGTCACAGACACTATTTCTGGCAGCCAGAA < 41bp 0.855783446886709 0.527891583357909 0.02406913 0.008574516 prediction 0.655783727057601 Functional Loss - PELI2 ENSG00000139946 CDS Human protein_coding chr14:56755199 chr14:56755202 synonymous SNV . 0 24 hm5C_associated_SNPs_51318 0 0 1 0 1 PELI2 chr14:56755155 3'AG 56755155 Downstream 48bp
chr19 58864328 58864328 1 + G T LUAD 58864325 + 58864305 58864345 41 AGCTCCAGGAGCTTGCTCAGCTGGGTCCATCCTGTGGACAA AGCTCCAGGAGCTTGCTCAGCTGTGTCCATCCTGTGGACAA < 41bp 0.85720704711711 0.529335244868308 0.662531 0.15921235 prediction 0.655743604497604 Functional Loss - A1BG ENSG00000121410 CDS Human protein_coding chr19:58864325 chr19:58864328 synonymous SNV . 0 24 hm5C_associated_SNPs_51320 0 0 0 0 1 A1BG chr19:58864410 5'GT 58864410 Upstream 83bp
chr15 101427914 101427914 1 + G T LUSC 101427911 + 101427891 101427931 41 GTGGAGAGGGACCGCGCCACCTTGGCCGTGAGTACATGCAC GTGGAGAGGGACCGCGCCACCTTTGCCGTGAGTACATGCAC < 41bp 0.827797752847985 0.481936585259971 0.11379439 0.06530106 prediction 0.655595505695971 Functional Loss - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101427911 chr15:101427914 nonsynonymous SNV 0.833 4 24 hm5C_associated_SNPs_51324 0 0 0 0 1 ALDH1A3 chr15:101427917 5'GT 101427917 Upstream 4bp
chr6 43042368 43042368 1 + G T KIRP 43042365 + 43042345 43042385 41 TGTTGTCTGTTTCAGGTCTCCCGGGGCCTCAGTGCCAGCAC TGTTGTCTGTTTCAGGTCTCCCGTGGCCTCAGTGCCAGCAC < 41bp 0.827790292906582 0.464746632118659 0.9328885 0.49319786 prediction 0.655580585813164 Functional Loss - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43042365 chr6:43042368 synonymous SNV . 0 24 hm5C_associated_SNPs_51325 0 0 1 0 1 KLC4 chr6:43042360 3'AG 43042360 Downstream 9bp
chr9 104075222 104075222 1 + G T COAD 104075219 + 104075199 104075239 41 CCACTGCTCGGACGTGATTGCTGGTTTCATCCTGGGCACTG CCACTGCTCGGACGTGATTGCTGTTTTCATCCTGGGCACTG < 41bp 0.827767122121596 0.477854953828283 0.15262806 0.06147185 prediction 0.655534244243193 Functional Loss - PLPPR1 ENSG00000148123 CDS Human protein_coding chr9:104075219 chr9:104075222 nonsynonymous SNV 0.914 5 24 hm5C_associated_SNPs_51327 0 0 1 0 1 PLPPR1 chr9:104075256 5'GT 104075256 Upstream 35bp
chr19 50204675 50204675 1 + G T SARC 50204672 + 50204652 50204692 41 TCTGTGCAGGACACCGTGCGCAAGGTGGGCCTGGGAGCGCG TCTGTGCAGGACACCGTGCGCAATGTGGGCCTGGGAGCGCG < 41bp 0.853168625993533 0.525407875898789 0.82810724 0.1904136 prediction 0.655521500189489 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50204672 chr19:50204675 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_51329 0 0 0 0 1 CPT1C chr19:50204675 5'GT 50204675 Upstream 1bp
chr9 95776254 95776254 1 + A C COAD 95776250 + 95776230 95776270 41 CAGAAACTGTCAGCCAAGAACGGCACCCCCCAGGACCGCCA CAGAAACTGTCAGCCAAGAACGGCCCCCCCCAGGACCGCCA < 41bp 0.827747999614963 0.426725518040123 0.3043412 0.21298113 prediction 0.655495999229926 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95776250 chr9:95776254 nonsynonymous SNV 0.592 4 25 hm5C_associated_SNPs_51330 0 0 0 0 1 FGD3 chr9:95776280 5'GT 95776280 Upstream 27bp
chr19 17885888 17885888 1 + G T LUSC 17885885 + 17885865 17885905 41 AGATTTCCTGGAGCCCGATTCAGGGGTGAGTGATGTGGGAG AGATTTCCTGGAGCCCGATTCAGTGGTGAGTGATGTGGGAG < 41bp 0.827698454898776 0.457593132522234 0.95899254 0.722527 prediction 0.655396909797551 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17885885 chr19:17885888 nonsynonymous SNV 0.973 0 24 hm5C_associated_SNPs_51332 0 0 1 0 2 FCHO1 chr19:17885865 3'AG 17885865 Downstream 24bp
chr19 17885888 17885888 1 + G T LUSC 17885885 + 17885865 17885905 41 AGATTTCCTGGAGCCCGATTCAGGGGTGAGTGATGTGGGAG AGATTTCCTGGAGCCCGATTCAGTGGTGAGTGATGTGGGAG < 41bp 0.827698454898776 0.457593132522234 0.95899254 0.722527 prediction 0.655396909797551 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17885885 chr19:17885888 nonsynonymous SNV 0.973 0 24 hm5C_associated_SNPs_51332 0 0 1 0 2 FCHO1 chr19:17885889 5'GT 17885889 Upstream 2bp
chr1 27120642 27120642 1 + A C STAD 27120638 + 27120618 27120658 41 CATCATCCCAGATCACCATGCAGAAGCCTTCTCTCCTCCTC CATCATCCCAGATCACCATGCAGACGCCTTCTCTCCTCCTC < 41bp 0.827663290515619 0.461207470893323 0.15624866 0.10144147 prediction 0.655326581031238 Functional Loss - PIGV ENSG00000060642 CDS Human protein_coding chr1:27120638 chr1:27120642 nonsynonymous SNV 0.847 1 25 hm5C_associated_SNPs_51334 0 0 0 0 2 PIGV chr1:27120604 3'AG 27120604 Downstream 39bp
chr1 27120642 27120642 1 + A C STAD 27120638 + 27120618 27120658 41 CATCATCCCAGATCACCATGCAGAAGCCTTCTCTCCTCCTC CATCATCCCAGATCACCATGCAGACGCCTTCTCTCCTCCTC < 41bp 0.827663290515619 0.461207470893323 0.15624866 0.10144147 prediction 0.655326581031238 Functional Loss - PIGV ENSG00000060642 CDS Human protein_coding chr1:27120638 chr1:27120642 nonsynonymous SNV 0.847 1 25 hm5C_associated_SNPs_51334 0 0 0 0 2 PIGV chr1:27120697 5'GT 27120697 Upstream 56bp
chr19 19338106 19338106 1 + G T UCEC 19338103 + 19338083 19338123 41 GTTGCAGGTTCTGCTGGTGGCAAGAGCTCCCCAGAGCCCTG GTTGCAGGTTCTGCTGGTGGCAATAGCTCCCCAGAGCCCTG < 41bp 0.827613242796261 0.465046994404914 0.47594875 0.31124756 prediction 0.655226485592522 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19338103 chr19:19338106 nonsynonymous SNV 0.735 2 24 hm5C_associated_SNPs_51336 0 0 0 0 1 NCAN chr19:19338090 3'AG 19338090 Downstream 17bp
chr6 54254606 54254606 1 + G T LUAD 54254603 + 54254583 54254623 41 CTGCAGATTGCTGCCAATTCCTGGGGAAAGTCATGGGGAGA CTGCAGATTGCTGCCAATTCCTGTGGAAAGTCATGGGGAGA < 41bp 0.830667124229016 0.503054488952948 0.87702876 0.33164597 prediction 0.655225270552135 Functional Loss - TINAG ENSG00000137251 CDS Human protein_coding chr6:54254603 chr6:54254606 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_51337 0 0 0 0 1 TINAG chr6:54254589 3'AG 54254589 Downstream 18bp
chr4 25671280 25671280 1 + G T HNSC 25671277 + 25671257 25671297 41 TCCCTCCCATAGAGCTTTTGCAGGAGCCACTGTCCATGACT TCCCTCCCATAGAGCTTTTGCAGTAGCCACTGTCCATGACT < 41bp 0.827594222875478 0.455518170643206 0.91396296 0.35466623 prediction 0.655188445750957 Functional Loss - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25671277 chr4:25671280 nonsynonymous SNV 0.457 5 24 hm5C_associated_SNPs_51339 0 0 0 0 1 SLC34A2 chr4:25671269 3'AG 25671269 Downstream 12bp
chr21 44441534 44441534 1 + A C SKCM 44441530 + 44441510 44441550 41 TGATGCGGTCCTGGCTCTTCCAGCACATCGGGGTAAGGACG TGATGCGGTCCTGGCTCTTCCAGCCCATCGGGGTAAGGACG < 41bp 0.827552315959785 0.43985184366774 0.10287872 0.21612805 prediction 0.655104631919569 Functional Loss - PKNOX1 ENSG00000160199 CDS Human protein_coding chr21:44441530 chr21:44441534 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_51342 0 0 1 0 1 PKNOX1 chr21:44441541 5'GT 44441541 Upstream 8bp
chr15 65918266 65918266 1 + G T LUSC 65918263 + 65918243 65918283 41 TGGGTGAAGGAGCAGCTCAGCAGGAGGCCAGTGGCCAAGGT TGGGTGAAGGAGCAGCTCAGCAGTAGGCCAGTGGCCAAGGT < 41bp 0.855881995905936 0.5283406724164 0.8234976 0.36213464 prediction 0.655082646979072 Functional Loss - SLC24A1 ENSG00000074621 CDS Human protein_coding chr15:65918263 chr15:65918266 nonsynonymous SNV 0.648 0 24 hm5C_associated_SNPs_51343 0 0 0 0 1 SLC24A1 chr15:65918308 5'GT 65918308 Upstream 43bp
chr16 55806303 55806303 1 + G T ESCA 55806300 + 55806280 55806320 41 GCACAGGGGATGAACACAGCCCGGGGAACTGGGGTCACCTG GCACAGGGGATGAACACAGCCCGTGGAACTGGGGTCACCTG < 41bp 0.827540242426418 0.487289024775414 0.7856755 0.111860484 prediction 0.655080484852836 Functional Loss - CES1P1 ENSG00000228695 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:55806300 chr16:55806303 . . 0 24 hm5C_associated_SNPs_51344 0 0 0 0 1 CES1P1 chr16:55806281 3'AG 55806281 Downstream 23bp
chr2 26676417 26676417 1 + G T LUAD 26676414 + 26676394 26676434 41 CGTCATGGGTCTGAAGAAGCCTAGGTGGGCTGCGGGGCTGG CGTCATGGGTCTGAAGAAGCCTATGTGGGCTGCGGGGCTGG < 41bp 0.864299395987559 0.536769365228673 0.49078238 0.15553707 prediction 0.655060061517773 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26676414 chr2:26676417 nonsynonymous SNV 0.558 4 24 hm5C_associated_SNPs_51345 0 0 0 0 1 DRC1 chr2:26676417 5'GT 26676417 Upstream 1bp
chr7 1273233 1273233 1 + G T UCEC 1273230 + 1273210 1273250 41 CCAACTTCACCGGCTGGCAGCTGGAGGAGCTGGAGAAGGCG CCAACTTCACCGGCTGGCAGCTGTAGGAGCTGGAGAAGGCG < 41bp 0.82748524512937 0.482132812398508 0.4640494 0.26804024 prediction 0.65497049025874 Functional Loss - UNCX ENSG00000164853 CDS Human protein_coding chr7:1273230 chr7:1273233 stopgain 1.000 0 24 hm5C_associated_SNPs_51348 0 0 0 0 2 UNCX chr7:1273156 3'AG 1273156 Downstream 78bp
chr7 1273233 1273233 1 + G T UCEC 1273230 + 1273210 1273250 41 CCAACTTCACCGGCTGGCAGCTGGAGGAGCTGGAGAAGGCG CCAACTTCACCGGCTGGCAGCTGTAGGAGCTGGAGAAGGCG < 41bp 0.82748524512937 0.482132812398508 0.4640494 0.26804024 prediction 0.65497049025874 Functional Loss - UNCX ENSG00000164853 CDS Human protein_coding chr7:1273230 chr7:1273233 stopgain 1.000 0 24 hm5C_associated_SNPs_51348 0 0 0 0 2 UNCX chr7:1273331 5'GT 1273331 Upstream 99bp
chr12 95879729 95879729 1 + G T COAD 95879726 + 95879706 95879746 41 ATGGTGTATTTCCCAAAGGACAAGAATGCGAATACCCACCC ATGGTGTATTTCCCAAAGGACAATAATGCGAATACCCACCC < 41bp 0.843887522416171 0.51640386165396 0.17842576 0.23804069 prediction 0.654967321524421 Functional Loss - METAP2 ENSG00000111142 CDS Human protein_coding chr12:95879726 chr12:95879729 stopgain 0.997 1 24 hm5C_associated_SNPs_51349 0 0 1 0 3 METAP2 chr12:95879655 3'AG 95879655 Downstream 75bp
chr12 95879729 95879729 1 + G T COAD 95879726 + 95879706 95879746 41 ATGGTGTATTTCCCAAAGGACAAGAATGCGAATACCCACCC ATGGTGTATTTCCCAAAGGACAATAATGCGAATACCCACCC < 41bp 0.843887522416171 0.51640386165396 0.17842576 0.23804069 prediction 0.654967321524421 Functional Loss - METAP2 ENSG00000111142 CDS Human protein_coding chr12:95879726 chr12:95879729 stopgain 0.997 1 24 hm5C_associated_SNPs_51349 0 0 1 0 3 METAP2 chr12:95879724 3'AG 95879724 Downstream 6bp
chr12 95879729 95879729 1 + G T COAD 95879726 + 95879706 95879746 41 ATGGTGTATTTCCCAAAGGACAAGAATGCGAATACCCACCC ATGGTGTATTTCCCAAAGGACAATAATGCGAATACCCACCC < 41bp 0.843887522416171 0.51640386165396 0.17842576 0.23804069 prediction 0.654967321524421 Functional Loss - METAP2 ENSG00000111142 CDS Human protein_coding chr12:95879726 chr12:95879729 stopgain 0.997 1 24 hm5C_associated_SNPs_51349 0 0 1 0 3 METAP2 chr12:95879757 5'GT 95879757 Upstream 29bp
chr19 55598801 55598801 1 + G T BLCA 55598798 + 55598778 55598818 41 TCACCGTGCAGCGCTCGCTGCTGGAGGTGAGCCGGACCGCT TCACCGTGCAGCGCTCGCTGCTGTAGGTGAGCCGGACCGCT < 41bp 0.827471384787443 0.478614730174615 0.34981436 0.23840141 prediction 0.654942769574887 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55598798 chr19:55598801 stopgain 0.998 1 24 hm5C_associated_SNPs_51351 0 0 0 0 1 EPS8L1 chr19:55598803 5'GT 55598803 Upstream 3bp
chr20 30525265 30525265 1 + G T UCEC 30525262 + 30525242 30525282 41 AGCCAGGAAGACTATGAGCTCAAGACCTGCCTCCTGGAAGA AGCCAGGAAGACTATGAGCTCAATACCTGCCTCCTGGAAGA < 41bp 0.827440550275853 0.47809662729261 0.19367671 0.10393268 prediction 0.654881100551706 Functional Loss - TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30525262 chr20:30525265 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51354 0 0 0 0 2 TTLL9 chr20:30525199 3'AG 30525199 Downstream 67bp
chr20 30525265 30525265 1 + G T UCEC 30525262 + 30525242 30525282 41 AGCCAGGAAGACTATGAGCTCAAGACCTGCCTCCTGGAAGA AGCCAGGAAGACTATGAGCTCAATACCTGCCTCCTGGAAGA < 41bp 0.827440550275853 0.47809662729261 0.19367671 0.10393268 prediction 0.654881100551706 Functional Loss - TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30525262 chr20:30525265 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51354 0 0 0 0 2 TTLL9 chr20:30525312 5'GT 30525312 Upstream 48bp
chr12 132400636 132400636 1 + G T LUAD 132400633 + 132400613 132400653 41 TGCAGTCCTGCCGGAACCTGCGGGGCTCACCCAAGCTGCCC TGCAGTCCTGCCGGAACCTGCGGTGCTCACCCAAGCTGCCC < 41bp 0.82737268156164 0.463676806774189 0.92183745 0.79475945 prediction 0.654745363123279 Functional Loss - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132400633 chr12:132400636 nonsynonymous SNV 0.739 0 24 hm5C_associated_SNPs_51358 0 0 1 0 1 ULK1 chr12:132400704 5'GT 132400704 Upstream 69bp
chr3 128998742 128998742 1 + G T UCEC 128998739 + 128998719 128998759 41 CAACAGCCCAGTGCTTCTGTCTCGACTGCACTTTGAGAAGG CAACAGCCCAGTGCTTCTGTCTCTACTGCACTTTGAGAAGG < 41bp 0.827371976209646 0.479096504139699 0.11583236 0.41206697 prediction 0.654743952419292 Functional Loss - HMCES ENSG00000183624 CDS Human protein_coding chr3:128998739 chr3:128998742 nonsynonymous SNV 0.527 1 24 hm5C_associated_SNPs_51359 0 0 1 0 1 HMCES chr3:128998758 5'GT 128998758 Upstream 17bp
chr2 113243499 113243499 1 + G T LUAD 113243496 + 113243476 113243516 41 CTCCTCTTTCCTTCCTAGGTCACGAGCCCGGGCTGGTACAG CTCCTCTTTCCTTCCTAGGTCACTAGCCCGGGCTGGTACAG < 41bp 0.827306601474036 0.466097531226986 0.1572327 0.099561125 prediction 0.654613202948071 Functional Loss - TTL ENSG00000114999 CDS Human protein_coding chr2:113243496 chr2:113243499 stopgain 0.994 1 24 hm5C_associated_SNPs_51364 0 0 1 0 2 TTL chr2:113243494 3'AG 113243494 Downstream 6bp
chr2 113243499 113243499 1 + G T LUAD 113243496 + 113243476 113243516 41 CTCCTCTTTCCTTCCTAGGTCACGAGCCCGGGCTGGTACAG CTCCTCTTTCCTTCCTAGGTCACTAGCCCGGGCTGGTACAG < 41bp 0.827306601474036 0.466097531226986 0.1572327 0.099561125 prediction 0.654613202948071 Functional Loss - TTL ENSG00000114999 CDS Human protein_coding chr2:113243496 chr2:113243499 stopgain 0.994 1 24 hm5C_associated_SNPs_51364 0 0 1 0 2 TTL chr2:113243572 5'GT 113243572 Upstream 74bp
chr3 111700719 111700719 1 + A C UCEC 111700715 + 111700695 111700735 41 GAAGCTAAAAGGCAAAAGTCCAGGAATTATCTTCATCCCTG GAAGCTAAAAGGCAAAAGTCCAGGCATTATCTTCATCCCTG < 41bp 0.827306071390083 0.471550201340452 0.5058355 0.5359766 prediction 0.654612142780166 Functional Loss - ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111700715 chr3:111700719 synonymous SNV . 0 25 hm5C_associated_SNPs_51365 0 0 0 0 2 ABHD10 chr3:111700631 3'AG 111700631 Downstream 89bp
chr3 111700719 111700719 1 + A C UCEC 111700715 + 111700695 111700735 41 GAAGCTAAAAGGCAAAAGTCCAGGAATTATCTTCATCCCTG GAAGCTAAAAGGCAAAAGTCCAGGCATTATCTTCATCCCTG < 41bp 0.827306071390083 0.471550201340452 0.5058355 0.5359766 prediction 0.654612142780166 Functional Loss - ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111700715 chr3:111700719 synonymous SNV . 0 25 hm5C_associated_SNPs_51365 0 0 0 0 2 ABHD10 chr3:111700814 5'GT 111700814 Upstream 96bp
chr7 148495716 148495716 1 + G T HNSC 148495713 + 148495693 148495733 41 CAATGAAAACCGAACAGAAGCAGGAACAAGAAACCACACAC CAATGAAAACCGAACAGAAGCAGTAACAAGAAACCACACAC < 41bp 0.833554663136687 0.506249677125456 0.49150324 0.09102911 prediction 0.654609972022462 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148495713 chr7:148495716 stopgain 1.000 1 24 hm5C_associated_SNPs_51366 0 0 1 0 2 CUL1 chr7:148495664 3'AG 148495664 Downstream 53bp
chr7 148495716 148495716 1 + G T HNSC 148495713 + 148495693 148495733 41 CAATGAAAACCGAACAGAAGCAGGAACAAGAAACCACACAC CAATGAAAACCGAACAGAAGCAGTAACAAGAAACCACACAC < 41bp 0.833554663136687 0.506249677125456 0.49150324 0.09102911 prediction 0.654609972022462 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148495713 chr7:148495716 stopgain 1.000 1 24 hm5C_associated_SNPs_51366 0 0 1 0 2 CUL1 chr7:148495769 5'GT 148495769 Upstream 54bp
chr19 9268713 9268713 1 + G T UCEC 9268710 + 9268690 9268730 41 CTTGGAGCAGGAGGAGGAGCCGAGGACAGAGGAGAGGGGCG CTTGGAGCAGGAGGAGGAGCCGATGACAGAGGAGAGGGGCG < 41bp 0.868597421946661 0.541302819738909 0.8903545 0.6598621 prediction 0.654589204415505 Functional Loss - ZNF317 ENSG00000130803 CDS Human protein_coding chr19:9268710 chr19:9268713 nonsynonymous SNV 0.246 1 24 hm5C_associated_SNPs_51367 0 0 1 0 2 ZNF317 chr19:9268656 3'AG 9268656 Downstream 58bp
chr19 9268713 9268713 1 + G T UCEC 9268710 + 9268690 9268730 41 CTTGGAGCAGGAGGAGGAGCCGAGGACAGAGGAGAGGGGCG CTTGGAGCAGGAGGAGGAGCCGATGACAGAGGAGAGGGGCG < 41bp 0.868597421946661 0.541302819738909 0.8903545 0.6598621 prediction 0.654589204415505 Functional Loss - ZNF317 ENSG00000130803 CDS Human protein_coding chr19:9268710 chr19:9268713 nonsynonymous SNV 0.246 1 24 hm5C_associated_SNPs_51367 0 0 1 0 2 ZNF317 chr19:9268751 5'GT 9268751 Upstream 39bp
chr12 27863860 27863860 1 + G T TGCT 27863857 + 27863837 27863877 41 GCATTCTCCACTGCCGTCTACTCGGCCACTCCGGTCCCGAC GCATTCTCCACTGCCGTCTACTCTGCCACTCCGGTCCCGAC < 41bp 0.848282809841863 0.521030742135617 0.23484296 0.094038635 prediction 0.654504135412492 Functional Loss - MRPS35 ENSG00000061794 CDS Human protein_coding chr12:27863857 chr12:27863860 synonymous SNV . 0 24 hm5C_associated_SNPs_51369 0 0 1 0 1 MRPS35 chr12:27863888 5'GT 27863888 Upstream 29bp
chr1 16378865 16378865 1 + G T UCEC 16378862 + 16378842 16378882 41 TATGATGGCACCGTCATTGTCAAGAAGCTGCCATACCTGCC TATGATGGCACCGTCATTGTCAATAAGCTGCCATACCTGCC < 41bp 0.867023181440277 0.539785658951451 0.57353145 0.07088184 prediction 0.654475044977652 Functional Loss - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16378862 chr1:16378865 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51371 0 0 0 0 1 CLCNKB chr1:16378906 5'GT 16378906 Upstream 42bp
chr21 38865437 38865437 1 + G T CESC 38865434 + 38865414 38865454 41 TATTTTGGTTGAAATGCACACTGGAGAACCTCTGTTCAGTG TATTTTGGTTGAAATGCACACTGTAGAACCTCTGTTCAGTG < 41bp 0.827223002426549 0.490637182682449 0.043127 0.022988856 prediction 0.654446004853097 Functional Loss - DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38865434 chr21:38865437 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51372 0 0 1 0 1 DYRK1A chr21:38865465 5'GT 38865465 Upstream 29bp
chr6 44149048 44149048 1 + G T UCEC 44149045 + 44149025 44149065 41 AAGATCCTGTGGAAAAAACTCAAGAAATGGATGGTAAAGGG AAGATCCTGTGGAAAAAACTCAATAAATGGATGGTAAAGGG < 41bp 0.827204868207009 0.474714168174893 0.11148837 0.04629031 prediction 0.654409736414017 Functional Loss - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44149045 chr6:44149048 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51373 0 0 0 0 2 CAPN11 chr6:44148989 3'AG 44148989 Downstream 60bp
chr6 44149048 44149048 1 + G T UCEC 44149045 + 44149025 44149065 41 AAGATCCTGTGGAAAAAACTCAAGAAATGGATGGTAAAGGG AAGATCCTGTGGAAAAAACTCAATAAATGGATGGTAAAGGG < 41bp 0.827204868207009 0.474714168174893 0.11148837 0.04629031 prediction 0.654409736414017 Functional Loss - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44149045 chr6:44149048 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51373 0 0 0 0 2 CAPN11 chr6:44149057 5'GT 44149057 Upstream 10bp
chr12 112926888 112926888 1 + G T COAD 112926885 + 112926865 112926905 41 GATGGTGCGGTCTCAGAGGTCAGGGATGGTCCAGACAGAAG GATGGTGCGGTCTCAGAGGTCAGTGATGGTCCAGACAGAAG < 41bp 0.827194434481082 0.465749501994531 0.9094713 0.48002777 prediction 0.654388868962163 Functional Loss - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926885 chr12:112926888 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_51374 5 0 1 0 2 PTPN11 chr12:112926828 3'AG 112926828 Downstream 61bp
chr12 112926888 112926888 1 + G T COAD 112926885 + 112926865 112926905 41 GATGGTGCGGTCTCAGAGGTCAGGGATGGTCCAGACAGAAG GATGGTGCGGTCTCAGAGGTCAGTGATGGTCCAGACAGAAG < 41bp 0.827194434481082 0.465749501994531 0.9094713 0.48002777 prediction 0.654388868962163 Functional Loss - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926885 chr12:112926888 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_51374 5 0 1 0 2 PTPN11 chr12:112926979 5'GT 112926979 Upstream 92bp
chr7 129357122 129357122 1 + G T LUAD 129357120 + 129357100 129357140 41 CATCCAGACGACGCAAGCATCAGAGGCCACCCAGGCGGTGG CATCCAGACGACGCAAGCATCATAGGCCACCCAGGCGGTGG < 41bp 0.833959279336037 0.506781716631632 0.9065064 0.16932696 prediction 0.654355125408809 Functional Loss - NRF1 ENSG00000106459 CDS Human protein_coding chr7:129357120 chr7:129357122 stopgain 1.000 1 23 hm5C_associated_SNPs_51376 0 0 1 0 2 NRF1 chr7:129357059 3'AG 129357059 Downstream 64bp
chr7 129357122 129357122 1 + G T LUAD 129357120 + 129357100 129357140 41 CATCCAGACGACGCAAGCATCAGAGGCCACCCAGGCGGTGG CATCCAGACGACGCAAGCATCATAGGCCACCCAGGCGGTGG < 41bp 0.833959279336037 0.506781716631632 0.9065064 0.16932696 prediction 0.654355125408809 Functional Loss - NRF1 ENSG00000106459 CDS Human protein_coding chr7:129357120 chr7:129357122 stopgain 1.000 1 23 hm5C_associated_SNPs_51376 0 0 1 0 2 NRF1 chr7:129357216 5'GT 129357216 Upstream 95bp
chr20 39980508 39980508 1 + G T ESCA 39980505 + 39980485 39980525 41 TGGGCCCCAGTGACATCTACCTGGATGACTTGCCCTCCCTG TGGGCCCCAGTGACATCTACCTGTATGACTTGCCCTCCCTG < 41bp 0.875872766050282 0.548701849906473 0.867289 0.17240363 prediction 0.654341832287619 Functional Loss - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39980505 chr20:39980508 nonsynonymous SNV 0.914 4 24 hm5C_associated_SNPs_51378 0 0 0 0 2 LPIN3 chr20:39980461 3'AG 39980461 Downstream 48bp
chr20 39980508 39980508 1 + G T ESCA 39980505 + 39980485 39980525 41 TGGGCCCCAGTGACATCTACCTGGATGACTTGCCCTCCCTG TGGGCCCCAGTGACATCTACCTGTATGACTTGCCCTCCCTG < 41bp 0.875872766050282 0.548701849906473 0.867289 0.17240363 prediction 0.654341832287619 Functional Loss - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39980505 chr20:39980508 nonsynonymous SNV 0.914 4 24 hm5C_associated_SNPs_51378 0 0 0 0 2 LPIN3 chr20:39980560 5'GT 39980560 Upstream 53bp
chr22 42422817 42422817 1 + G T LUSC 42422814 + 42422794 42422834 41 CAGGATATGGAGCCCCACCTCCCGGATACGGAGCCCCACCT CAGGATATGGAGCCCCACCTCCCTGATACGGAGCCCCACCT < 41bp 0.827167549723775 0.461204583226176 0.3374932 0.15300545 prediction 0.65433509944755 Functional Loss - WBP2NL ENSG00000183066 CDS Human protein_coding chr22:42422814 chr22:42422817 stopgain 0.000 0 24 hm5C_associated_SNPs_51379 0 0 0 0 1 WBP2NL chr22:42422770 3'AG 42422770 Downstream 48bp
chr2 103380882 103380882 1 + A C OV 103380878 + 103380858 103380898 41 CAACTCGACCTCCTATGACTCTGCAGTTAGTAAGTACCCTC CAACTCGACCTCCTATGACTCTGCCGTTAGTAAGTACCCTC < 41bp 0.883676001738608 0.556591486550253 0.30644023 0.299738 prediction 0.654169030376709 Functional Loss - TMEM182 ENSG00000170417 CDS Human protein_coding chr2:103380878 chr2:103380882 synonymous SNV . 0 25 hm5C_associated_SNPs_51381 0 0 1 0 2 TMEM182 chr2:103380788 3'AG 103380788 Downstream 95bp
chr2 103380882 103380882 1 + A C OV 103380878 + 103380858 103380898 41 CAACTCGACCTCCTATGACTCTGCAGTTAGTAAGTACCCTC CAACTCGACCTCCTATGACTCTGCCGTTAGTAAGTACCCTC < 41bp 0.883676001738608 0.556591486550253 0.30644023 0.299738 prediction 0.654169030376709 Functional Loss - TMEM182 ENSG00000170417 CDS Human protein_coding chr2:103380878 chr2:103380882 synonymous SNV . 0 25 hm5C_associated_SNPs_51381 0 0 1 0 2 TMEM182 chr2:103380886 5'GT 103380886 Upstream 5bp
chr11 193127 193127 1 + G T LUSC 193124 + 193104 193144 41 AGGGGAGCCGTGCCCTCCTGCTGGTGGCCCTCACCCTGTTC AGGGGAGCCGTGCCCTCCTGCTGTTGGCCCTCACCCTGTTC < 41bp 0.82707950383862 0.460005481695102 0.32380542 0.051606447 prediction 0.654159007677239 Functional Loss - SCGB1C1;SCGB1C2 ENSG00000188076 CDS Human protein_coding chr11:193124 chr11:193127 nonsynonymous SNV 0.847 1 24 hm5C_associated_SNPs_51384 0 0 0 0 1 SCGB1C1;SCGB1C2 chr11:193154 5'GT 193154 Upstream 28bp
chr3 40192648 40192648 1 + G T COAD 40192645 + 40192625 40192665 41 ACCTGTACAGGAAGCACCGGCTGGAGAGTGGCGCGTGCTTC ACCTGTACAGGAAGCACCGGCTGTAGAGTGGCGCGTGCTTC < 41bp 0.835968741839074 0.508890927286018 0.6938341 0.39126018 prediction 0.654155629106112 Functional Loss - MYRIP ENSG00000170011 CDS Human protein_coding chr3:40192645 chr3:40192648 stopgain 0.924 1 24 hm5C_associated_SNPs_51385 0 0 0 0 1 MYRIP chr3:40192675 5'GT 40192675 Upstream 28bp
chr11 58722369 58722369 1 + G T LUAD 58722366 + 58722346 58722386 41 GGAAACAGAGACTCCAAATCCAAGGTAACGAGTCTGAAGAA GGAAACAGAGACTCCAAATCCAATGTAACGAGTCTGAAGAA < 41bp 0.827027967232084 0.480151235797242 0.89114726 0.05721554 prediction 0.654055934464168 Functional Loss - GLYATL1 ENSG00000166840 CDS Human protein_coding chr11:58722366 chr11:58722369 nonsynonymous SNV 0.017 3 24 hm5C_associated_SNPs_51386 0 0 0 0 1 GLYATL1 chr11:58722369 5'GT 58722369 Upstream 1bp
chr1 120056551 120056551 1 + G T UCEC 120056548 + 120056528 120056568 41 GTAGCCGGGCCCAACTCCTACAAGGAAATCATCCAGAATGG GTAGCCGGGCCCAACTCCTACAATGAAATCATCCAGAATGG < 41bp 0.827021411572984 0.459174791364851 0.15899372 0.01038155 prediction 0.654042823145968 Functional Loss - HSD3B1 ENSG00000203857 CDS Human protein_coding chr1:120056548 chr1:120056551 nonsynonymous SNV 0.345 1 24 hm5C_associated_SNPs_51387 0 0 0 0 1 HSD3B1 chr1:120056457 3'AG 120056457 Downstream 95bp
chr22 50960982 50960982 1 + G T HNSC 50960979 + 50960959 50960999 41 GAGCCCGAGGGAGCAGACCCCAGGGAAGCCGCTGACCTTGG GAGCCCGAGGGAGCAGACCCCAGTGAAGCCGCTGACCTTGG < 41bp 0.82699888073265 0.459034848973881 0.89208555 0.57751215 prediction 0.653997761465301 Functional Loss - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50960979 chr22:50960982 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_51388 0 0 1 0 3 NCAPH2 chr22:50960927 3'AG 50960927 Downstream 56bp
chr22 50960982 50960982 1 + G T HNSC 50960979 + 50960959 50960999 41 GAGCCCGAGGGAGCAGACCCCAGGGAAGCCGCTGACCTTGG GAGCCCGAGGGAGCAGACCCCAGTGAAGCCGCTGACCTTGG < 41bp 0.82699888073265 0.459034848973881 0.89208555 0.57751215 prediction 0.653997761465301 Functional Loss - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50960979 chr22:50960982 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_51388 0 0 1 0 3 NCAPH2 chr22:50960930 3'AG 50960930 Downstream 53bp
chr22 50960982 50960982 1 + G T HNSC 50960979 + 50960959 50960999 41 GAGCCCGAGGGAGCAGACCCCAGGGAAGCCGCTGACCTTGG GAGCCCGAGGGAGCAGACCCCAGTGAAGCCGCTGACCTTGG < 41bp 0.82699888073265 0.459034848973881 0.89208555 0.57751215 prediction 0.653997761465301 Functional Loss - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50960979 chr22:50960982 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_51388 0 0 1 0 3 NCAPH2 chr22:50960998 5'GT 50960998 Upstream 17bp
chr2 233273445 233273445 1 + G T UCEC 233273442 + 233273422 233273462 41 GAGCCTGGAGACATGAAATACGAGATCCACCGAGACTCCAC GAGCCTGGAGACATGAAATACGATATCCACCGAGACTCCAC < 41bp 0.862198711861591 0.535300351531027 0.6334578 0.10388011 prediction 0.653796720661128 Functional Loss - ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233273442 chr2:233273445 nonsynonymous SNV 0.013 1 24 hm5C_associated_SNPs_51394 0 0 0 0 1 ALPPL2 chr2:233273414 3'AG 233273414 Downstream 32bp
chr19 16964979 16964979 1 + A C OV 16964975 + 16964955 16964995 41 TCCGCCGGGTGCTGAAGAGCCAGGAGGTGTATGAAAACTTC TCCGCCGGGTGCTGAAGAGCCAGGCGGTGTATGAAAACTTC < 41bp 0.879079994456546 0.552217666457843 0.7603724 0.73764706 prediction 0.653724655997405 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16964975 chr19:16964979 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_51396 0 0 1 0 2 SIN3B chr19:16964954 3'AG 16964954 Downstream 26bp
chr19 16964979 16964979 1 + A C OV 16964975 + 16964955 16964995 41 TCCGCCGGGTGCTGAAGAGCCAGGAGGTGTATGAAAACTTC TCCGCCGGGTGCTGAAGAGCCAGGCGGTGTATGAAAACTTC < 41bp 0.879079994456546 0.552217666457843 0.7603724 0.73764706 prediction 0.653724655997405 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16964975 chr19:16964979 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_51396 0 0 1 0 2 SIN3B chr19:16965072 5'GT 16965072 Upstream 94bp
chr1 36766574 36766574 1 + A C COAD 36766570 + 36766550 36766590 41 CTACAAAGCAGAAGAGTACACTGAAGAGACAGAGGAAAGAG CTACAAAGCAGAAGAGTACACTGACGAGACAGAGGAAAGAG < 41bp 0.826853591868032 0.43635745888305 0.040442646 0.035885423 prediction 0.653707183736064 Functional Loss - THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36766570 chr1:36766574 nonsynonymous SNV 0.981 1 25 hm5C_associated_SNPs_51398 0 0 1 0 1 THRAP3 chr1:36766487 3'AG 36766487 Downstream 88bp
chr2 162696351 162696351 1 + G T UCEC 162696348 + 162696328 162696368 41 CTTGGAACCGAGGATGATGACGAGGAACACATTCCTCATGA CTTGGAACCGAGGATGATGACGATGAACACATTCCTCATGA < 41bp 0.826851071532393 0.49104917782862 0.68698156 0.06981209 prediction 0.653702143064786 Functional Loss - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162696348 chr2:162696351 nonsynonymous SNV 0.981 1 24 hm5C_associated_SNPs_51399 0 0 0 3 2 SLC4A10 chr2:162696299 3'AG 162696299 Downstream 53bp
chr2 162696351 162696351 1 + G T UCEC 162696348 + 162696328 162696368 41 CTTGGAACCGAGGATGATGACGAGGAACACATTCCTCATGA CTTGGAACCGAGGATGATGACGATGAACACATTCCTCATGA < 41bp 0.826851071532393 0.49104917782862 0.68698156 0.06981209 prediction 0.653702143064786 Functional Loss - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162696348 chr2:162696351 nonsynonymous SNV 0.981 1 24 hm5C_associated_SNPs_51399 0 0 0 3 2 SLC4A10 chr2:162696437 5'GT 162696437 Upstream 87bp
chrX 103042816 103042816 1 + G T LIHC 103042813 + 103042793 103042833 41 GTGTACATTTACTTCAACACCTGGACCACCTGCCAGTCTAT GTGTACATTTACTTCAACACCTGTACCACCTGCCAGTCTAT < 41bp 0.864942747459751 0.53811326795488 0.18365732 0.044548064 prediction 0.653658959009742 Functional Loss - PLP1 ENSG00000123560 CDS Human protein_coding chrX:103042813 chrX:103042816 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51400 0 0 1 0 2 PLP1 chrX:103042727 3'AG 103042727 Downstream 90bp
chrX 103042816 103042816 1 + G T LIHC 103042813 + 103042793 103042833 41 GTGTACATTTACTTCAACACCTGGACCACCTGCCAGTCTAT GTGTACATTTACTTCAACACCTGTACCACCTGCCAGTCTAT < 41bp 0.864942747459751 0.53811326795488 0.18365732 0.044548064 prediction 0.653658959009742 Functional Loss - PLP1 ENSG00000123560 CDS Human protein_coding chrX:103042813 chrX:103042816 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51400 0 0 1 0 2 PLP1 chrX:103042895 5'GT 103042895 Upstream 80bp
chr1 41228657 41228657 1 + G T SARC 41228654 + 41228634 41228674 41 CCAACAGGCCCAGAGTGGCACTGGACAGACCATGCAGGTGA CCAACAGGCCCAGAGTGGCACTGTACAGACCATGCAGGTGA < 41bp 0.826821019575568 0.4960516259989 0.38361958 0.089803934 prediction 0.653642039151135 Functional Loss - NFYC ENSG00000066136 CDS Human protein_coding chr1:41228654 chr1:41228657 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51401 0 0 1 0 2 NFYC chr1:41228560 3'AG 41228560 Downstream 98bp
chr1 41228657 41228657 1 + G T SARC 41228654 + 41228634 41228674 41 CCAACAGGCCCAGAGTGGCACTGGACAGACCATGCAGGTGA CCAACAGGCCCAGAGTGGCACTGTACAGACCATGCAGGTGA < 41bp 0.826821019575568 0.4960516259989 0.38361958 0.089803934 prediction 0.653642039151135 Functional Loss - NFYC ENSG00000066136 CDS Human protein_coding chr1:41228654 chr1:41228657 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51401 0 0 1 0 2 NFYC chr1:41228718 5'GT 41228718 Upstream 62bp
chr12 56380883 56380883 1 + G T LUSC 56380880 + 56380860 56380900 41 GTTTTGTCAAAGGGCAGTTCCATGAGTACCAGGAGAGCACC GTTTTGTCAAAGGGCAGTTCCATTAGTACCAGGAGAGCACC < 41bp 0.826745955845439 0.479691187532629 0.3803754 0.25877464 prediction 0.653491911690877 Functional Loss - RAB5B ENSG00000111540 CDS Human protein_coding chr12:56380880 chr12:56380883 stopgain 1.000 1 24 hm5C_associated_SNPs_51406 0 0 1 0 1 RAB5B chr12:56380907 5'GT 56380907 Upstream 25bp
chr2 31472333 31472333 1 + G T LUAD 31472330 + 31472310 31472350 41 GGGGAGAAGCAGAGGATCAGCCGGGGTAAGCAACCTGCCTG GGGGAGAAGCAGAGGATCAGCCGTGGTAAGCAACCTGCCTG < 41bp 0.873078337273613 0.546367516022725 0.9325205 0.7804549 prediction 0.653421642501774 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31472330 chr2:31472333 synonymous SNV . 0 24 hm5C_associated_SNPs_51407 0 0 0 0 2 EHD3 chr2:31472237 3'AG 31472237 Downstream 97bp
chr2 31472333 31472333 1 + G T LUAD 31472330 + 31472310 31472350 41 GGGGAGAAGCAGAGGATCAGCCGGGGTAAGCAACCTGCCTG GGGGAGAAGCAGAGGATCAGCCGTGGTAAGCAACCTGCCTG < 41bp 0.873078337273613 0.546367516022725 0.9325205 0.7804549 prediction 0.653421642501774 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31472330 chr2:31472333 synonymous SNV . 0 24 hm5C_associated_SNPs_51407 0 0 0 0 2 EHD3 chr2:31472334 5'GT 31472334 Upstream 2bp
chr19 3121014 3121014 1 + G T LUAD 3121011 + 3120991 3121031 41 CCAGCGGGACGCCCAGGCGGCGCGGGAGTTCATCCTGAAGA CCAGCGGGACGCCCAGGCGGCGCTGGAGTTCATCCTGAAGA < 41bp 0.826624213485955 0.47555147571605 0.67478144 0.3655882 prediction 0.65324842697191 Functional Loss - GNA11 ENSG00000088256 CDS Human protein_coding chr19:3121011 chr19:3121014 nonsynonymous SNV 0.647 2 24 hm5C_associated_SNPs_51412 0 0 0 0 1 GNA11 chr19:3120987 3'AG 3120987 Downstream 28bp
chr7 106545637 106545637 1 + A C HNSC 106545633 + 106545613 106545653 41 GTTCTCCATGATGCTGATGACAGGAATGCCCCAGTTAACAA GTTCTCCATGATGCTGATGACAGGCATGCCCCAGTTAACAA < 41bp 0.826540298418122 0.464880096754794 0.40332693 0.24641776 prediction 0.653080596836243 Functional Loss - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106545633 chr7:106545637 synonymous SNV . 0 25 hm5C_associated_SNPs_51418 0 0 1 0 1 PIK3CG chr7:106545554 3'AG 106545554 Downstream 84bp
chr6 46797282 46797282 1 + A C STAD 46797278 + 46797258 46797298 41 ATGACAGCACAGGCAATGTTCGCAAGTTGGTGAAGGTGCAG ATGACAGCACAGGCAATGTTCGCACGTTGGTGAAGGTGCAG < 41bp 0.826538241346941 0.438594320353036 0.45921394 0.42341027 prediction 0.653076482693882 Functional Loss - MEP1A ENSG00000112818 CDS Human protein_coding chr6:46797278 chr6:46797282 nonsynonymous SNV 0.905 2 25 hm5C_associated_SNPs_51420 0 0 0 0 1 MEP1A chr6:46797308 5'GT 46797308 Upstream 27bp
chr16 31309101 31309101 1 + G T LUAD 31309098 + 31309078 31309118 41 CAGTGTGATGCTGTTCTCTACGGGGAGCAGGGCCAACCCTG CAGTGTGATGCTGTTCTCTACGGTGAGCAGGGCCAACCCTG < 41bp 0.874683701423909 0.548150130368065 0.77350557 0.16000834 prediction 0.653067142111688 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31309098 chr16:31309101 synonymous SNV . 0 24 hm5C_associated_SNPs_51421 0 0 0 0 2 ITGAM chr16:31309063 3'AG 31309063 Downstream 39bp
chr16 31309101 31309101 1 + G T LUAD 31309098 + 31309078 31309118 41 CAGTGTGATGCTGTTCTCTACGGGGAGCAGGGCCAACCCTG CAGTGTGATGCTGTTCTCTACGGTGAGCAGGGCCAACCCTG < 41bp 0.874683701423909 0.548150130368065 0.77350557 0.16000834 prediction 0.653067142111688 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31309098 chr16:31309101 synonymous SNV . 0 24 hm5C_associated_SNPs_51421 0 0 0 0 2 ITGAM chr16:31309066 3'AG 31309066 Downstream 36bp
chr19 44469153 44469153 1 + G T LUSC 44469150 + 44469130 44469170 41 TGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTGCC TGGTCTTCACTGAGGAGGAGCTGTGGCTGCTGGACCCTGCC < 41bp 0.826530561662318 0.451664270854608 0.8685063 0.51278037 prediction 0.653061123324636 Functional Loss - ZNF221 ENSG00000159905 CDS Human protein_coding chr19:44469150 chr19:44469153 nonsynonymous SNV 0.964 3 24 hm5C_associated_SNPs_51422 0 0 0 0 2 ZNF221 chr19:44469102 3'AG 44469102 Downstream 52bp
chr19 44469153 44469153 1 + G T LUSC 44469150 + 44469130 44469170 41 TGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTGCC TGGTCTTCACTGAGGAGGAGCTGTGGCTGCTGGACCCTGCC < 41bp 0.826530561662318 0.451664270854608 0.8685063 0.51278037 prediction 0.653061123324636 Functional Loss - ZNF221 ENSG00000159905 CDS Human protein_coding chr19:44469150 chr19:44469153 nonsynonymous SNV 0.964 3 24 hm5C_associated_SNPs_51422 0 0 0 0 2 ZNF221 chr19:44469228 5'GT 44469228 Upstream 76bp
chr10 50901872 50901872 1 + G T GBM 50901869 + 50901849 50901889 41 ATCCTAGAGAAGATAGAAGACTGGAATGTGGTGGAACTCAT ATCCTAGAGAAGATAGAAGACTGTAATGTGGTGGAACTCAT < 41bp 0.843164262100816 0.516636293694056 0.36871657 0.29535395 prediction 0.653055936813519 Functional Loss - C10orf53 ENSG00000178645 CDS Human other chr10:50901869 chr10:50901872 nonsynonymous SNV 0.987 3 24 hm5C_associated_SNPs_51423 0 0 0 2 1 C10orf53 chr10:50901820 3'AG 50901820 Downstream 53bp
chr18 19209092 19209092 1 + G T STAD 19209089 + 19209069 19209109 41 TGGCAGAGGAAGAGGGGGTCCTAGGCGATAATGTCTCTCAA TGGCAGAGGAAGAGGGGGTCCTATGCGATAATGTCTCTCAA < 41bp 0.826502073612457 0.489917480004486 0.37203997 0.18684727 prediction 0.653004147224914 Functional Loss - SNRPD1 ENSG00000167088 CDS Human protein_coding chr18:19209089 chr18:19209092 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51424 0 0 1 0 1 SNRPD1 chr18:19209023 3'AG 19209023 Downstream 70bp
chr15 76630252 76630252 1 + G T GBM 76630249 + 76630229 76630269 41 GAGTGCAGCCAGTACCTGGACGAGACGTGCACGTGCTTCGT GAGTGCAGCCAGTACCTGGACGATACGTGCACGTGCTTCGT < 41bp 0.826455315624749 0.465319095525238 0.37510264 0.050213903 prediction 0.652910631249498 Functional Loss - ISL2 ENSG00000159556 CDS Human protein_coding chr15:76630249 chr15:76630252 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51427 0 0 1 0 1 ISL2 chr15:76630308 5'GT 76630308 Upstream 57bp
chr1 9030938 9030938 1 + G T OV 9030935 + 9030915 9030955 41 GTTGCCCCCAGGTTTGGAAGCTGGAGAATTCCTTACTGGAT GTTGCCCCCAGGTTTGGAAGCTGTAGAATTCCTTACTGGAT < 41bp 0.826441475384416 0.469431224846287 0.41934776 0.17626762 prediction 0.652882950768833 Functional Loss - CA6 ENSG00000131686 CDS Human protein_coding chr1:9030935 chr1:9030938 stopgain 0.012 1 24 hm5C_associated_SNPs_51429 0 0 0 0 1 CA6 chr1:9030926 3'AG 9030926 Downstream 13bp
chr19 4929473 4929473 1 + A C rs2123731 4929469 + 4929449 4929489 41 TGAGGACATGTGGGATGAGACGGAATTGGGGCTGTACAAGG TGAGGACATGTGGGATGAGACGGACTTGGGGCTGTACAAGG < 41bp 0.852924722356514 0.52648950931236 0.8514539 0.87124324 prediction 0.652870426088308 Functional Loss - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4929469 chr19:4929473 . 0.028 0 25 hm5C_associated_SNPs_51430 0 0 1 0 1 UHRF1 chr19:4929488 5'GT 4929488 Upstream 16bp
chr12 52309224 52309224 1 + G T LUAD 52309221 + 52309201 52309241 41 GCAAACCAGCCATTGCCCACCGCGACTTCAAGAGCCGCAAT GCAAACCAGCCATTGCCCACCGCTACTTCAAGAGCCGCAAT < 41bp 0.826427540108596 0.473658475160452 0.14081576 0.09729749 prediction 0.652855080217192 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309221 chr12:52309224 nonsynonymous SNV 0.994 5 24 hm5C_associated_SNPs_51432 0 0 0 0 1 ACVRL1 chr12:52309284 5'GT 52309284 Upstream 61bp
chr1 161133967 161133967 1 + G T COAD 161133964 + 161133944 161133984 41 TTTCCCCCAGAAAGGATTTGCTGGGGGCAAGGTGTCTCTGC TTTCCCCCAGAAAGGATTTGCTGTGGGCAAGGTGTCTCTGC < 41bp 0.826394630270025 0.455974446554907 0.55528736 0.06718922 prediction 0.652789260540051 Functional Loss - USP21 ENSG00000143258 CDS Human protein_coding chr1:161133964 chr1:161133967 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51433 0 0 1 0 2 USP21 chr1:161133954 3'AG 161133954 Downstream 14bp
chr1 161133967 161133967 1 + G T COAD 161133964 + 161133944 161133984 41 TTTCCCCCAGAAAGGATTTGCTGGGGGCAAGGTGTCTCTGC TTTCCCCCAGAAAGGATTTGCTGTGGGCAAGGTGTCTCTGC < 41bp 0.826394630270025 0.455974446554907 0.55528736 0.06718922 prediction 0.652789260540051 Functional Loss - USP21 ENSG00000143258 CDS Human protein_coding chr1:161133964 chr1:161133967 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51433 0 0 1 0 2 USP21 chr1:161134040 5'GT 161134040 Upstream 74bp
chr17 41368530 41368530 1 + G T SARC 41368527 + 41368507 41368547 41 ATGGTGACACAGCTGACCCTCGAGGTTCTGCACCTGTCCCT ATGGTGACACAGCTGACCCTCGATGTTCTGCACCTGTCCCT < 41bp 0.826393345290042 0.454619985205204 0.93104017 0.39671135 prediction 0.652786690580083 Functional Loss - TMEM106A ENSG00000184988 CDS Human protein_coding chr17:41368527 chr17:41368530 nonsynonymous SNV 0.058 3 24 hm5C_associated_SNPs_51434 0 0 1 0 2 TMEM106A chr17:41368468 3'AG 41368468 Downstream 63bp
chr17 41368530 41368530 1 + G T SARC 41368527 + 41368507 41368547 41 ATGGTGACACAGCTGACCCTCGAGGTTCTGCACCTGTCCCT ATGGTGACACAGCTGACCCTCGATGTTCTGCACCTGTCCCT < 41bp 0.826393345290042 0.454619985205204 0.93104017 0.39671135 prediction 0.652786690580083 Functional Loss - TMEM106A ENSG00000184988 CDS Human protein_coding chr17:41368527 chr17:41368530 nonsynonymous SNV 0.058 3 24 hm5C_associated_SNPs_51434 0 0 1 0 2 TMEM106A chr17:41368608 5'GT 41368608 Upstream 79bp
chr7 36324418 36324418 1 + G T ESCA 36324415 + 36324395 36324435 41 TGGCGGGCCCCAGCCCATACCTCGGGAGGTTCAAGGTACCC TGGCGGGCCCCAGCCCATACCTCTGGAGGTTCAAGGTACCC < 41bp 0.826377041056634 0.471603444248962 0.2520998 0.28873742 prediction 0.652754082113268 Functional Loss - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36324415 chr7:36324418 nonsynonymous SNV 0.009 2 24 hm5C_associated_SNPs_51436 0 0 1 0 1 EEPD1 chr7:36324429 5'GT 36324429 Upstream 12bp
chr1 196654324 196654324 1 + A C rs1061147 196654320 + 196654300 196654340 41 TCCTGCAACCCGGGGAAATACAGCAAAATGCACAAGTACTG TCCTGCAACCCGGGGAAATACAGCCAAATGCACAAGTACTG < 41bp 0.887908785402296 0.561533693091216 0.5140585 0.6903584 prediction 0.65275018462216 Functional Loss - CFH ENSG00000000971 CDS Human protein_coding chr1:196654320 chr1:196654324 synonymous SNV . 0 25 hm5C_associated_SNPs_51437 4 1 1 0 1 CFH chr1:196654367 5'GT 196654367 Upstream 44bp
chr13 25264494 25264494 1 + G T UCEC 25264491 + 25264471 25264511 41 TGCAGCAAGCTCTCGTCATCCGAGATTCCGAGAAGAAGACC TGCAGCAAGCTCTCGTCATCCGATATTCCGAGAAGAAGACC < 41bp 0.859504843734214 0.533196240611986 0.18500534 0.12570661 prediction 0.652617206244456 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25264491 chr13:25264494 nonsynonymous SNV 0.238 5 24 hm5C_associated_SNPs_51442 0 0 0 0 1 ATP12A chr13:25264476 3'AG 25264476 Downstream 19bp
chr6 42903362 42903362 1 + A C STAD 42903358 + 42903338 42903378 41 AGACCATTTGCAAGAGGCTCCTGGATTATAGCCTGCACAAG AGACCATTTGCAAGAGGCTCCTGGCTTATAGCCTGCACAAG < 41bp 0.826298574385275 0.441255784114877 0.4412873 0.43295187 prediction 0.65259714877055 Functional Loss - CNPY3 ENSG00000137161 CDS Human protein_coding chr6:42903358 chr6:42903362 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_51444 0 0 1 0 2 CNPY3 chr6:42903312 3'AG 42903312 Downstream 51bp
chr6 42903362 42903362 1 + A C STAD 42903358 + 42903338 42903378 41 AGACCATTTGCAAGAGGCTCCTGGATTATAGCCTGCACAAG AGACCATTTGCAAGAGGCTCCTGGCTTATAGCCTGCACAAG < 41bp 0.826298574385275 0.441255784114877 0.4412873 0.43295187 prediction 0.65259714877055 Functional Loss - CNPY3 ENSG00000137161 CDS Human protein_coding chr6:42903358 chr6:42903362 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_51444 0 0 1 0 2 CNPY3 chr6:42903408 5'GT 42903408 Upstream 47bp
chr12 51863450 51863450 1 + A C LIHC 51863446 + 51863426 51863466 41 AAGCGGAAGGCCCCCTGGTACTGGAGCGACTACCGAGATGC AAGCGGAAGGCCCCCTGGTACTGGCGCGACTACCGAGATGC < 41bp 0.826294511369683 0.47517603561978 0.7003174 0.3310144 prediction 0.652589022739365 Functional Loss - SLC4A8 ENSG00000050438 CDS Human protein_coding chr12:51863446 chr12:51863450 nonsynonymous SNV 0.996 5 25 hm5C_associated_SNPs_51445 0 0 0 0 1 SLC4A8 chr12:51863398 3'AG 51863398 Downstream 53bp
chr19 50203965 50203965 1 + G T LUSC 50203963 + 50203943 50203983 41 GTGGACAACACCACGGGCTCCGGGGGGTCCTGGCAGCCGCG GTGGACAACACCACGGGCTCCGTGGGGTCCTGGCAGCCGCG < 41bp 0.828851600066467 0.502559427929549 0.9223844 0.36833608 prediction 0.652584344273836 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50203963 chr19:50203965 synonymous SNV . 0 23 hm5C_associated_SNPs_51447 0 0 0 0 1 CPT1C chr19:50203941 3'AG 50203941 Downstream 25bp
chr4 20482387 20482387 1 + G T LUSC 20482384 + 20482364 20482404 41 TGTATTGAAGATGGGGCATTCAGGGCTCTCCGGGACCTGGA TGTATTGAAGATGGGGCATTCAGTGCTCTCCGGGACCTGGA < 41bp 0.826292109887612 0.484478469004308 0.93449074 0.5409992 prediction 0.652584219775224 Functional Loss - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20482384 chr4:20482387 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_51448 0 0 1 0 2 SLIT2 chr4:20482339 3'AG 20482339 Downstream 49bp
chr4 20482387 20482387 1 + G T LUSC 20482384 + 20482364 20482404 41 TGTATTGAAGATGGGGCATTCAGGGCTCTCCGGGACCTGGA TGTATTGAAGATGGGGCATTCAGTGCTCTCCGGGACCTGGA < 41bp 0.826292109887612 0.484478469004308 0.93449074 0.5409992 prediction 0.652584219775224 Functional Loss - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20482384 chr4:20482387 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_51448 0 0 1 0 2 SLIT2 chr4:20482410 5'GT 20482410 Upstream 24bp
chr12 124104031 124104031 1 + G T UCEC 124104028 + 124104008 124104048 41 TTTGCCCTGCTGAGGATGCCCAAGATGCCAGAATTGAGAGG TTTGCCCTGCTGAGGATGCCCAATATGCCAGAATTGAGAGG < 41bp 0.826278194764092 0.472834689010732 0.38716197 0.18628907 prediction 0.652556389528185 Functional Loss - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124104028 chr12:124104031 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51449 0 0 1 1 2 DDX55 chr12:124103979 3'AG 124103979 Downstream 53bp
chr12 124104031 124104031 1 + G T UCEC 124104028 + 124104008 124104048 41 TTTGCCCTGCTGAGGATGCCCAAGATGCCAGAATTGAGAGG TTTGCCCTGCTGAGGATGCCCAATATGCCAGAATTGAGAGG < 41bp 0.826278194764092 0.472834689010732 0.38716197 0.18628907 prediction 0.652556389528185 Functional Loss - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124104028 chr12:124104031 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51449 0 0 1 1 2 DDX55 chr12:124103995 3'AG 124103995 Downstream 37bp
chr12 121659957 121659957 1 + A C BRCA 121659953 + 121659933 121659973 41 AGCTGTACTGCCGGCTCTGCCGGCACCCACAGCAACGGTAC AGCTGTACTGCCGGCTCTGCCGGCCCCCACAGCAACGGTAC < 41bp 0.870364088057174 0.544086433590875 0.49279553 0.42357215 prediction 0.652555308932597 Functional Loss - P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121659953 chr12:121659957 nonsynonymous SNV 0.584 0 25 hm5C_associated_SNPs_51450 0 0 1 0 2 P2RX4 chr12:121659897 3'AG 121659897 Downstream 61bp
chr12 121659957 121659957 1 + A C BRCA 121659953 + 121659933 121659973 41 AGCTGTACTGCCGGCTCTGCCGGCACCCACAGCAACGGTAC AGCTGTACTGCCGGCTCTGCCGGCCCCCACAGCAACGGTAC < 41bp 0.870364088057174 0.544086433590875 0.49279553 0.42357215 prediction 0.652555308932597 Functional Loss - P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121659953 chr12:121659957 nonsynonymous SNV 0.584 0 25 hm5C_associated_SNPs_51450 0 0 1 0 2 P2RX4 chr12:121659969 5'GT 121659969 Upstream 13bp
chr15 41863274 41863274 1 + G T UCEC 41863271 + 41863251 41863291 41 TGCGGGAGGCCCAGCTGAAGCAAGAGGATGGCTCCTTTGTG TGCGGGAGGCCCAGCTGAAGCAATAGGATGGCTCCTTTGTG < 41bp 0.826263942581993 0.457263055532797 0.8681611 0.35589963 prediction 0.652527885163985 Functional Loss - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41863271 chr15:41863274 stopgain 0.989 0 24 hm5C_associated_SNPs_51453 0 0 1 0 2 TYRO3 chr15:41863236 3'AG 41863236 Downstream 39bp
chr15 41863274 41863274 1 + G T UCEC 41863271 + 41863251 41863291 41 TGCGGGAGGCCCAGCTGAAGCAAGAGGATGGCTCCTTTGTG TGCGGGAGGCCCAGCTGAAGCAATAGGATGGCTCCTTTGTG < 41bp 0.826263942581993 0.457263055532797 0.8681611 0.35589963 prediction 0.652527885163985 Functional Loss - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41863271 chr15:41863274 stopgain 0.989 0 24 hm5C_associated_SNPs_51453 0 0 1 0 2 TYRO3 chr15:41863316 5'GT 41863316 Upstream 43bp
chr1 18661395 18661395 1 + G T LUAD 18661392 + 18661372 18661412 41 TCTGCCTCCCCCAGGCTGCCCGAGGTCCGGATCTCAGACAA TCTGCCTCCCCCAGGCTGCCCGATGTCCGGATCTCAGACAA < 41bp 0.826190314254585 0.462185853105447 0.3463934 0.12774661 prediction 0.652380628509171 Functional Loss - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18661392 chr1:18661395 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51456 0 0 0 0 1 IGSF21 chr1:18661386 3'AG 18661386 Downstream 10bp
chr6 45480098 45480098 1 + G T COAD 45480096 + 45480076 45480116 41 CCACCCCGCTGTCTTCCACACGGGGCACTGGGCTTCCTGCC CCACCCCGCTGTCTTCCACACGTGGCACTGGGCTTCCTGCC < 41bp 0.832020597007201 0.505843997423172 0.9243989 0.27299172 prediction 0.652353199168057 Functional Loss - RUNX2 ENSG00000124813 CDS Human protein_coding chr6:45480096 chr6:45480098 synonymous SNV . 0 23 hm5C_associated_SNPs_51457 0 0 0 0 1 RUNX2 chr6:45480144 5'GT 45480144 Upstream 47bp
chr10 96306225 96306225 1 + A C LUSC 96306221 + 96306201 96306241 41 GGAAGAACAGCTTGAAGCTGCTGGACTAGAGAGAGAGCGGA GGAAGAACAGCTTGAAGCTGCTGGCCTAGAGAGAGAGCGGA < 41bp 0.826168900216015 0.456243856115736 0.29897457 0.19575912 prediction 0.65233780043203 Functional Loss - HELLS ENSG00000119969 CDS Human protein_coding chr10:96306221 chr10:96306225 synonymous SNV . 0 25 hm5C_associated_SNPs_51458 0 0 1 0 2 HELLS chr10:96306134 3'AG 96306134 Downstream 92bp
chr10 96306225 96306225 1 + A C LUSC 96306221 + 96306201 96306241 41 GGAAGAACAGCTTGAAGCTGCTGGACTAGAGAGAGAGCGGA GGAAGAACAGCTTGAAGCTGCTGGCCTAGAGAGAGAGCGGA < 41bp 0.826168900216015 0.456243856115736 0.29897457 0.19575912 prediction 0.65233780043203 Functional Loss - HELLS ENSG00000119969 CDS Human protein_coding chr10:96306221 chr10:96306225 synonymous SNV . 0 25 hm5C_associated_SNPs_51458 0 0 1 0 2 HELLS chr10:96306255 5'GT 96306255 Upstream 31bp
chr3 16327930 16327930 1 + G T UCEC 16327927 + 16327907 16327947 41 TCCGCTTGCTTGTTGCTGATCAAGACTTTTCCTTTAAAGCT TCCGCTTGCTTGTTGCTGATCAATACTTTTCCTTTAAAGCT < 41bp 0.826164894150342 0.462650488244083 0.16417545 0.058849096 prediction 0.652329788300684 Functional Loss - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16327927 chr3:16327930 nonsynonymous SNV 0.022 2 24 hm5C_associated_SNPs_51459 0 0 1 0 2 OXNAD1 chr3:16327849 3'AG 16327849 Downstream 82bp
chr3 16327930 16327930 1 + G T UCEC 16327927 + 16327907 16327947 41 TCCGCTTGCTTGTTGCTGATCAAGACTTTTCCTTTAAAGCT TCCGCTTGCTTGTTGCTGATCAATACTTTTCCTTTAAAGCT < 41bp 0.826164894150342 0.462650488244083 0.16417545 0.058849096 prediction 0.652329788300684 Functional Loss - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16327927 chr3:16327930 nonsynonymous SNV 0.022 2 24 hm5C_associated_SNPs_51459 0 0 1 0 2 OXNAD1 chr3:16327955 5'GT 16327955 Upstream 26bp
chr19 8121383 8121383 1 + G T UCEC 8121380 + 8121360 8121400 41 ACCACAACACGCAGACCTTCCAAGGTGGGCAAGACCTCTGC ACCACAACACGCAGACCTTCCAATGTGGGCAAGACCTCTGC < 41bp 0.861103726506035 0.534940333898904 0.84260774 0.26404497 prediction 0.652326785214263 Functional Loss - CCL25 ENSG00000131142 CDS Human protein_coding chr19:8121380 chr19:8121383 nonsynonymous SNV 0.038 0 24 hm5C_associated_SNPs_51460 0 0 0 0 1 CCL25 chr19:8121383 5'GT 8121383 Upstream 1bp
chr19 55221917 55221917 1 + G T LUAD 55221914 + 55221894 55221934 41 ATCCGTGGCAGACCCTCCCTCTCGGTGCAGCCGGGCCCCAC ATCCGTGGCAGACCCTCCCTCTCTGTGCAGCCGGGCCCCAC < 41bp 0.829763512725181 0.503609903458189 0.35128617 0.04707113 prediction 0.652307218533984 Functional Loss - LILRP2 ENSG00000170858 ncRNA_exonic Human transcribed_processed_pseudogene chr19:55221914 chr19:55221917 . . 0 24 hm5C_associated_SNPs_51461 0 0 0 0 1 LILRP2 chr19:55221889 3'AG 55221889 Downstream 29bp
chr15 99874160 99874160 1 + G T BRCA 99874157 + 99874137 99874177 41 ATTTGAAGGAGCTGCAGACACTAGACATTTCTACCAATCGT ATTTGAAGGAGCTGCAGACACTATACATTTCTACCAATCGT < 41bp 0.826083163136888 0.487211556702696 0.3687805 0.5212947 prediction 0.652166326273775 Functional Loss - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99874157 chr15:99874160 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51470 0 0 1 0 1 LRRC28 chr15:99874128 3'AG 99874128 Downstream 33bp
chr1 16352670 16352670 1 + G T COAD 16352667 + 16352647 16352687 41 TTGGAGGACTACCTGGATATCAAGAACTTTGGGGCCAAGGT TTGGAGGACTACCTGGATATCAATAACTTTGGGGCCAAGGT < 41bp 0.86666536808352 0.540583819639884 0.9183861 0.7153647 prediction 0.652163096887271 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16352667 chr1:16352670 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_51471 0 0 0 0 2 CLCNKA chr1:16352603 3'AG 16352603 Downstream 68bp
chr1 16352670 16352670 1 + G T COAD 16352667 + 16352647 16352687 41 TTGGAGGACTACCTGGATATCAAGAACTTTGGGGCCAAGGT TTGGAGGACTACCTGGATATCAATAACTTTGGGGCCAAGGT < 41bp 0.86666536808352 0.540583819639884 0.9183861 0.7153647 prediction 0.652163096887271 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16352667 chr1:16352670 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_51471 0 0 0 0 2 CLCNKA chr1:16352742 5'GT 16352742 Upstream 73bp
chr1 34667733 34667733 1 + G T LUAD 34667730 + 34667710 34667750 41 CAAGAACAACCCGAAGTACACAGGGAATGTTTTCACTCCAC CAAGAACAACCCGAAGTACACAGTGAATGTTTTCACTCCAC < 41bp 0.826072563672927 0.45353869791912 0.90364975 0.15363336 prediction 0.652145127345853 Functional Loss - C1orf94 ENSG00000142698 CDS Human protein_coding chr1:34667730 chr1:34667733 nonsynonymous SNV 0.133 4 24 hm5C_associated_SNPs_51473 0 0 0 0 1 C1orf94 chr1:34667685 3'AG 34667685 Downstream 49bp
chr21 40880951 40880951 1 + A C UCEC 40880947 + 40880927 40880967 41 AGAAGAAGGAGAGACAGCCACAGAAGAGGTACGGTCGACCA AGAAGAAGGAGAGACAGCCACAGACGAGGTACGGTCGACCA < 41bp 0.826067952345343 0.455027921762576 0.38777417 0.2096256 prediction 0.652135904690687 Functional Loss - SH3BGR;WRB-SH3BGR ENSG00000185437 CDS Human protein_coding chr21:40880947 chr21:40880951 nonsynonymous SNV 0.923 0 25 hm5C_associated_SNPs_51474 0 0 1 0 2 SH3BGR;WRB-SH3BGR chr21:40880925 3'AG 40880925 Downstream 27bp
chr21 40880951 40880951 1 + A C UCEC 40880947 + 40880927 40880967 41 AGAAGAAGGAGAGACAGCCACAGAAGAGGTACGGTCGACCA AGAAGAAGGAGAGACAGCCACAGACGAGGTACGGTCGACCA < 41bp 0.826067952345343 0.455027921762576 0.38777417 0.2096256 prediction 0.652135904690687 Functional Loss - SH3BGR;WRB-SH3BGR ENSG00000185437 CDS Human protein_coding chr21:40880947 chr21:40880951 nonsynonymous SNV 0.923 0 25 hm5C_associated_SNPs_51474 0 0 1 0 2 SH3BGR;WRB-SH3BGR chr21:40880954 5'GT 40880954 Upstream 4bp
chr9 34506803 34506803 1 + G T UCEC 34506800 + 34506780 34506820 41 AACGTGGCCATTTACAACCTCAAGAAGCCCCACTCCCAGCC AACGTGGCCATTTACAACCTCAATAAGCCCCACTCCCAGCC < 41bp 0.826027594911739 0.457095472371979 0.15725502 0.123524755 prediction 0.652055189823478 Functional Loss - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34506800 chr9:34506803 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51477 0 0 0 0 1 DNAI1 chr9:34506872 5'GT 34506872 Upstream 70bp
chr6 37446287 37446287 1 + G T SKCM 37446284 + 37446264 37446304 41 CCCATGGGCCTCTACATCGTCAGGACAGTGAATGGTGGGTG CCCATGGGCCTCTACATCGTCAGTACAGTGAATGGTGGGTG < 41bp 0.826021780181196 0.469200436654606 0.91318214 0.31736428 prediction 0.652043560362392 Functional Loss - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37446284 chr6:37446287 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51478 0 0 1 0 1 CMTR1 chr6:37446297 5'GT 37446297 Upstream 11bp
chr14 24606982 24606982 1 + G T UCEC 24606979 + 24606959 24606999 41 CAGCGCTTGAAGCCTGAGATCAAGGATGTCATTGAGCAGCT CAGCGCTTGAAGCCTGAGATCAATGATGTCATTGAGCAGCT < 41bp 0.82600125344888 0.456401142832545 0.8977835 0.13187104 prediction 0.65200250689776 Functional Loss - PSME1 ENSG00000092010 CDS Human protein_coding chr14:24606979 chr14:24606982 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51479 0 0 1 0 2 PSME1 chr14:24606909 3'AG 24606909 Downstream 74bp
chr14 24606982 24606982 1 + G T UCEC 24606979 + 24606959 24606999 41 CAGCGCTTGAAGCCTGAGATCAAGGATGTCATTGAGCAGCT CAGCGCTTGAAGCCTGAGATCAATGATGTCATTGAGCAGCT < 41bp 0.82600125344888 0.456401142832545 0.8977835 0.13187104 prediction 0.65200250689776 Functional Loss - PSME1 ENSG00000092010 CDS Human protein_coding chr14:24606979 chr14:24606982 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51479 0 0 1 0 2 PSME1 chr14:24607006 5'GT 24607006 Upstream 25bp
chr17 14248368 14248368 1 + A C CESC 14248364 + 14248344 14248384 41 GGGACCTGATGCCCAGAACCCTGGACGGGCAGATCACCATG GGGACCTGATGCCCAGAACCCTGGCCGGGCAGATCACCATG < 41bp 0.880516924049478 0.554545642276763 0.74227595 0.5746816 prediction 0.651942563545431 Functional Loss - HS3ST3B1 ENSG00000125430 CDS Human protein_coding chr17:14248364 chr17:14248368 nonsynonymous SNV 0.962 0 25 hm5C_associated_SNPs_51480 0 0 0 0 1 HS3ST3B1 chr17:14248345 3'AG 14248345 Downstream 24bp
chr19 52877610 52877610 1 + G T UCEC 52877607 + 52877587 52877627 41 TTGGAGCAAAGGAGAGATCCCCGGAATCTGCAGAGTGAAGT TTGGAGCAAAGGAGAGATCCCCGTAATCTGCAGAGTGAAGT < 41bp 0.82596642602446 0.480930288388377 0.49662858 0.20353344 prediction 0.65193285204892 Functional Loss - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52877607 chr19:52877610 synonymous SNV . 0 24 hm5C_associated_SNPs_51481 0 0 1 0 3 ZNF880 chr19:52877552 3'AG 52877552 Downstream 59bp
chr19 52877610 52877610 1 + G T UCEC 52877607 + 52877587 52877627 41 TTGGAGCAAAGGAGAGATCCCCGGAATCTGCAGAGTGAAGT TTGGAGCAAAGGAGAGATCCCCGTAATCTGCAGAGTGAAGT < 41bp 0.82596642602446 0.480930288388377 0.49662858 0.20353344 prediction 0.65193285204892 Functional Loss - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52877607 chr19:52877610 synonymous SNV . 0 24 hm5C_associated_SNPs_51481 0 0 1 0 3 ZNF880 chr19:52877647 5'GT 52877647 Upstream 38bp
chr19 52877610 52877610 1 + G T UCEC 52877607 + 52877587 52877627 41 TTGGAGCAAAGGAGAGATCCCCGGAATCTGCAGAGTGAAGT TTGGAGCAAAGGAGAGATCCCCGTAATCTGCAGAGTGAAGT < 41bp 0.82596642602446 0.480930288388377 0.49662858 0.20353344 prediction 0.65193285204892 Functional Loss - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52877607 chr19:52877610 synonymous SNV . 0 24 hm5C_associated_SNPs_51481 0 0 1 0 3 ZNF880 chr19:52877680 5'GT 52877680 Upstream 71bp
chr8 145065972 145065972 1 + G T STAD 145065969 + 145065949 145065989 41 ATCCGACAGGCCTTCATCCGCAAGGTGGGTAGGGGCATCTC ATCCGACAGGCCTTCATCCGCAATGTGGGTAGGGGCATCTC < 41bp 0.871540666184742 0.545596240675314 0.8617134 0.40553677 prediction 0.651888851018857 Functional Loss - GRINA ENSG00000178719 CDS Human protein_coding chr8:145065969 chr8:145065972 nonsynonymous SNV 0.954 4 24 hm5C_associated_SNPs_51482 0 0 1 0 1 GRINA chr8:145065972 5'GT 145065972 Upstream 1bp
chr15 20496613 20496613 1 + A C COAD 20496609 + 20496589 20496629 41 ATTTTCAGCCTTCTACTAGTCGAAAGTGGCCTCATGAAGGG ATTTTCAGCCTTCTACTAGTCGAACGTGGCCTCATGAAGGG < 41bp 0.837079460814 0.511149968962352 0.18060145 0.11351937 prediction 0.651858983703297 Functional Loss - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20496609 chr15:20496613 . . 0 25 hm5C_associated_SNPs_51484 0 0 0 0 1 CHEK2P2 chr15:20496597 3'AG 20496597 Downstream 17bp
chr17 45351806 45351806 1 + G T MESO 45351803 + 45351783 45351823 41 AGGGCCCAACATCTGTACCACGCGAGGTGTGAGCTCCTGCC AGGGCCCAACATCTGTACCACGCTAGGTGTGAGCTCCTGCC < 41bp 0.868004757822203 0.54208421488723 0.4771918 0.36168575 prediction 0.651841085869946 Functional Loss - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45351803 chr17:45351806 nonsynonymous SNV 0.984 3 24 hm5C_associated_SNPs_51485 0 0 0 0 2 ITGB3 chr17:45351785 3'AG 45351785 Downstream 22bp
chr17 45351806 45351806 1 + G T MESO 45351803 + 45351783 45351823 41 AGGGCCCAACATCTGTACCACGCGAGGTGTGAGCTCCTGCC AGGGCCCAACATCTGTACCACGCTAGGTGTGAGCTCCTGCC < 41bp 0.868004757822203 0.54208421488723 0.4771918 0.36168575 prediction 0.651841085869946 Functional Loss - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45351803 chr17:45351806 nonsynonymous SNV 0.984 3 24 hm5C_associated_SNPs_51485 0 0 0 0 2 ITGB3 chr17:45351870 5'GT 45351870 Upstream 65bp
chr4 69978204 69978204 1 + G T UCEC 69978201 + 69978181 69978221 41 AGAGAATGTTATGAAATTATCAAGAATTCAACATGATCAAC AGAGAATGTTATGAAATTATCAATAATTCAACATGATCAAC < 41bp 0.834579842684898 0.50866392484644 0.17095834 0.057466835 prediction 0.651831835676916 Functional Loss - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69978201 chr4:69978204 nonsynonymous SNV 0.685 1 24 hm5C_associated_SNPs_51486 0 0 0 0 1 UGT2B7 chr4:69978175 3'AG 69978175 Downstream 30bp
chr2 211460281 211460281 1 + G T LUAD 211460278 + 211460258 211460298 41 GGCTGGAGAATTTGATTACTCAGGATCTCAAGCTGTAAAAG GGCTGGAGAATTTGATTACTCAGTATCTCAAGCTGTAAAAG < 41bp 0.852318198224032 0.526439421413831 0.86666757 0.21586728 prediction 0.651757553620403 Functional Loss - CPS1 ENSG00000021826 CDS Human protein_coding chr2:211460278 chr2:211460281 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_51488 0 0 1 0 2 CPS1 chr2:211460211 3'AG 211460211 Downstream 71bp
chr2 211460281 211460281 1 + G T LUAD 211460278 + 211460258 211460298 41 GGCTGGAGAATTTGATTACTCAGGATCTCAAGCTGTAAAAG GGCTGGAGAATTTGATTACTCAGTATCTCAAGCTGTAAAAG < 41bp 0.852318198224032 0.526439421413831 0.86666757 0.21586728 prediction 0.651757553620403 Functional Loss - CPS1 ENSG00000021826 CDS Human protein_coding chr2:211460278 chr2:211460281 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_51488 0 0 1 0 2 CPS1 chr2:211460306 5'GT 211460306 Upstream 26bp
chr2 219735837 219735837 1 + G T LIHC 219735834 + 219735814 219735854 41 GGCGGCAGGCCGAGTTGTGCCAGGCTGAGCCGGAAGTGGTG GGCGGCAGGCCGAGTTGTGCCAGTCTGAGCCGGAAGTGGTG < 41bp 0.825706607035074 0.476017843063875 0.7468159 0.59578323 prediction 0.651413214070148 Functional Loss - WNT6 ENSG00000115596 CDS Human protein_coding chr2:219735834 chr2:219735837 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_51496 0 0 0 0 1 WNT6 chr2:219735749 3'AG 219735749 Downstream 89bp
chr7 2565099 2565099 1 + G T SARC 2565097 + 2565077 2565117 41 ACGTCAACCTGCGGGCCCTGCTGCGGCTGCTGGCCAGCTAC ACGTCAACCTGCGGGCCCTGCTTCGGCTGCTGGCCAGCTAC < 41bp 0.82601616084153 0.500339128756997 0.663304 0.13001028 prediction 0.651354064169066 Functional Loss - LFNG ENSG00000106003 CDS Human protein_coding chr7:2565097 chr7:2565099 synonymous SNV . 0 23 hm5C_associated_SNPs_51497 0 0 0 0 1 LFNG chr7:2565048 3'AG 2565048 Downstream 52bp
chr20 36030925 36030925 1 + G T OV 36030922 + 36030902 36030942 41 ACATCCTGGTGGGAGAGAACCTGGTGTGCAAAGTGGCGGAC ACATCCTGGTGGGAGAGAACCTGTTGTGCAAAGTGGCGGAC < 41bp 0.825663986409822 0.459933487379397 0.89331347 0.3470236 prediction 0.651327972819645 Functional Loss - SRC ENSG00000197122 CDS Human protein_coding chr20:36030922 chr20:36030925 nonsynonymous SNV 0.982 2 24 hm5C_associated_SNPs_51498 0 0 1 0 2 SRC chr20:36030838 3'AG 36030838 Downstream 88bp
chr20 36030925 36030925 1 + G T OV 36030922 + 36030902 36030942 41 ACATCCTGGTGGGAGAGAACCTGGTGTGCAAAGTGGCGGAC ACATCCTGGTGGGAGAGAACCTGTTGTGCAAAGTGGCGGAC < 41bp 0.825663986409822 0.459933487379397 0.89331347 0.3470236 prediction 0.651327972819645 Functional Loss - SRC ENSG00000197122 CDS Human protein_coding chr20:36030922 chr20:36030925 nonsynonymous SNV 0.982 2 24 hm5C_associated_SNPs_51498 0 0 1 0 2 SRC chr20:36030991 5'GT 36030991 Upstream 67bp
chr19 3941137 3941137 1 + A C STAD 3941133 + 3941113 3941153 41 GCCACGTGTGGCCCATGTACCAGAAGTATAGGCAGGAGATG GCCACGTGTGGCCCATGTACCAGACGTATAGGCAGGAGATG < 41bp 0.825657718543942 0.455746740799589 0.8564548 0.71194816 prediction 0.651315437087885 Functional Loss - NMRK2 ENSG00000077009 CDS Human protein_coding chr19:3941133 chr19:3941137 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_51499 0 0 0 0 2 NMRK2 chr19:3941069 3'AG 3941069 Downstream 69bp
chr19 3941137 3941137 1 + A C STAD 3941133 + 3941113 3941153 41 GCCACGTGTGGCCCATGTACCAGAAGTATAGGCAGGAGATG GCCACGTGTGGCCCATGTACCAGACGTATAGGCAGGAGATG < 41bp 0.825657718543942 0.455746740799589 0.8564548 0.71194816 prediction 0.651315437087885 Functional Loss - NMRK2 ENSG00000077009 CDS Human protein_coding chr19:3941133 chr19:3941137 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_51499 0 0 0 0 2 NMRK2 chr19:3941175 5'GT 3941175 Upstream 39bp
chr6 74072850 74072850 1 + G T LUAD 74072847 + 74072827 74072867 41 GAGAACGCATCCCGCACGTCCAGGGTATGTCCCAAATCTTG GAGAACGCATCCCGCACGTCCAGTGTATGTCCCAAATCTTG < 41bp 0.87465311765003 0.549007088308445 0.8670406 0.3445634 prediction 0.65129205868317 Functional Loss - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74072847 chr6:74072850 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_51500 0 0 0 0 1 KHDC3L chr6:74072818 3'AG 74072818 Downstream 33bp
chr1 25678175 25678175 1 + G T UCEC 25678172 + 25678152 25678192 41 ATAGTTACAGTGAAGGTTGTCTGGGTCAAACAGGTAAATAG ATAGTTACAGTGAAGGTTGTCTGTGTCAAACAGGTAAATAG < 41bp 0.85175905188318 0.526128013909769 0.4934941 0.08933428 prediction 0.651262075946824 Functional Loss - TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25678172 chr1:25678175 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51503 0 0 1 0 2 TMEM50A chr1:25678117 3'AG 25678117 Downstream 59bp
chr1 25678175 25678175 1 + G T UCEC 25678172 + 25678152 25678192 41 ATAGTTACAGTGAAGGTTGTCTGGGTCAAACAGGTAAATAG ATAGTTACAGTGAAGGTTGTCTGTGTCAAACAGGTAAATAG < 41bp 0.85175905188318 0.526128013909769 0.4934941 0.08933428 prediction 0.651262075946824 Functional Loss - TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25678172 chr1:25678175 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51503 0 0 1 0 2 TMEM50A chr1:25678184 5'GT 25678184 Upstream 10bp
chr16 31308949 31308949 1 + G T SKCM 31308946 + 31308926 31308966 41 ACGAGCAGACCCGAGGGGGCCAGGTGTCCGTGTGCCCCTTG ACGAGCAGACCCGAGGGGGCCAGTTGTCCGTGTGCCCCTTG < 41bp 0.825626403499433 0.458536123238256 0.9106181 0.2993884 prediction 0.651252806998865 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31308946 chr16:31308949 nonsynonymous SNV 0.961 3 24 hm5C_associated_SNPs_51505 0 0 0 0 1 ITGAM chr16:31308975 5'GT 31308975 Upstream 27bp
chr1 156142717 156142717 1 + G T SARC 156142714 + 156142694 156142734 41 GACGCCCCTGCTGGTGAAATCTGGCGTGGAGTATACACGGC GACGCCCCTGCTGGTGAAATCTGTCGTGGAGTATACACGGC < 41bp 0.825600241001117 0.453013134440941 0.7454902 0.1540153 prediction 0.651200482002234 Functional Loss - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156142714 chr1:156142717 nonsynonymous SNV 0.906 1 24 hm5C_associated_SNPs_51508 0 0 0 0 1 SEMA4A chr1:156142797 5'GT 156142797 Upstream 81bp
chr11 75507405 75507405 1 + G T UCEC 75507402 + 75507382 75507422 41 ACACACAACCTGCTGACCACCAGGAACTATATCTTTGGATA ACACACAACCTGCTGACCACCAGTAACTATATCTTTGGATA < 41bp 0.867441786489497 0.541873800112896 0.8647758 0.114949405 prediction 0.651135972753203 Functional Loss - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75507402 chr11:75507405 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_51511 0 0 0 0 1 DGAT2 chr11:75507373 3'AG 75507373 Downstream 33bp
chr1 28879574 28879574 1 + G T rs138696611 28879571 + 28879551 28879591 41 TTGGCGCCCGCGCGGGCCTTCGAGCCCCGCCCGCAGAGCCC TTGGCGCCCGCGCGGGCCTTCGATCCCCGCCCGCAGAGCCC < 41bp 0.837855595023657 0.512323107971495 0.89228034 0.27481872 prediction 0.651064974104324 Functional Loss - TRNAU1AP ENSG00000180098 upstream Human protein_coding chr1:28879571 chr1:28879574 . . 0 24 hm5C_associated_SNPs_51513 0 0 0 0 1 TRNAU1AP chr1:28879649 5'GT 28879649 Upstream 76bp
chr18 12971218 12971218 1 + G T PCPG 12971215 + 12971195 12971235 41 AGTAGCCCCAACGCAATGGCCAAGGTTCAGATTTTTGAATA AGTAGCCCCAACGCAATGGCCAATGTTCAGATTTTTGAATA < 41bp 0.825516310361216 0.472236674702178 0.30642092 0.085152835 prediction 0.651032620722432 Functional Loss - SEH1L ENSG00000085415 CDS Human protein_coding chr18:12971215 chr18:12971218 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51514 0 0 1 0 2 SEH1L chr18:12971152 3'AG 12971152 Downstream 67bp
chr18 12971218 12971218 1 + G T PCPG 12971215 + 12971195 12971235 41 AGTAGCCCCAACGCAATGGCCAAGGTTCAGATTTTTGAATA AGTAGCCCCAACGCAATGGCCAATGTTCAGATTTTTGAATA < 41bp 0.825516310361216 0.472236674702178 0.30642092 0.085152835 prediction 0.651032620722432 Functional Loss - SEH1L ENSG00000085415 CDS Human protein_coding chr18:12971215 chr18:12971218 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51514 0 0 1 0 2 SEH1L chr18:12971250 5'GT 12971250 Upstream 33bp
chr16 28993729 28993729 1 + G T CESC 28993726 + 28993706 28993746 41 CCGGAGTCCTGGGTGTGGGCCTGGGTGTGGAGATCAGCCGC CCGGAGTCCTGGGTGTGGGCCTGTGTGTGGAGATCAGCCGC < 41bp 0.874780530296622 0.549265811105595 0.7623035 0.19153947 prediction 0.651029438382055 Functional Loss - SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28993726 chr16:28993729 nonsynonymous SNV 0.987 4 24 hm5C_associated_SNPs_51515 0 0 1 0 1 SPNS1 chr16:28993677 3'AG 28993677 Downstream 53bp
chr16 57151419 57151419 1 + G T LUAD 57151417 + 57151397 57151437 41 CGGCCTTACAGATCGCTGCCCAGGAGCTGTCCGACAACCGC CGGCCTTACAGATCGCTGCCCATGAGCTGTCCGACAACCGC < 41bp 0.825510949978485 0.496636064740343 0.7993808 0.29616266 prediction 0.65102189995697 Functional Loss - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57151417 chr16:57151419 nonsynonymous SNV 0.951 2 23 hm5C_associated_SNPs_51517 0 0 0 0 2 CPNE2 chr16:57151408 3'AG 57151408 Downstream 12bp
chr16 57151419 57151419 1 + G T LUAD 57151417 + 57151397 57151437 41 CGGCCTTACAGATCGCTGCCCAGGAGCTGTCCGACAACCGC CGGCCTTACAGATCGCTGCCCATGAGCTGTCCGACAACCGC < 41bp 0.825510949978485 0.496636064740343 0.7993808 0.29616266 prediction 0.65102189995697 Functional Loss - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57151417 chr16:57151419 nonsynonymous SNV 0.951 2 23 hm5C_associated_SNPs_51517 0 0 0 0 2 CPNE2 chr16:57151479 5'GT 57151479 Upstream 61bp
chr15 99901568 99901568 1 + G T BLCA 99901565 + 99901545 99901585 41 GGTGCTCCCATTCAAGTTTCCGAGGTGAAGCTGCTTTCCTT GGTGCTCCCATTCAAGTTTCCGATGTGAAGCTGCTTTCCTT < 41bp 0.825508534673516 0.469812250873124 0.9065335 0.20176357 prediction 0.651017069347033 Functional Loss - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99901565 chr15:99901568 nonsynonymous SNV 0.920 3 24 hm5C_associated_SNPs_51518 0 0 1 0 1 LRRC28 chr15:99901541 3'AG 99901541 Downstream 28bp
chr7 127231094 127231094 1 + G T LUSC 127231091 + 127231071 127231111 41 GACATGCCCAACGCCATGCCCGTGAGCGAGCTGACTGACAA GACATGCCCAACGCCATGCCCGTTAGCGAGCTGACTGACAA < 41bp 0.861950021707923 0.536446992646032 0.10702932 0.015306979 prediction 0.651006058123782 Functional Loss - ARF5 ENSG00000004059 CDS Human protein_coding chr7:127231091 chr7:127231094 synonymous SNV . 0 24 hm5C_associated_SNPs_51519 0 0 1 0 2 ARF5 chr7:127231017 3'AG 127231017 Downstream 78bp
chr7 127231094 127231094 1 + G T LUSC 127231091 + 127231071 127231111 41 GACATGCCCAACGCCATGCCCGTGAGCGAGCTGACTGACAA GACATGCCCAACGCCATGCCCGTTAGCGAGCTGACTGACAA < 41bp 0.861950021707923 0.536446992646032 0.10702932 0.015306979 prediction 0.651006058123782 Functional Loss - ARF5 ENSG00000004059 CDS Human protein_coding chr7:127231091 chr7:127231094 synonymous SNV . 0 24 hm5C_associated_SNPs_51519 0 0 1 0 2 ARF5 chr7:127231142 5'GT 127231142 Upstream 49bp
chr3 147130465 147130465 1 + G T COAD 147130462 + 147130442 147130482 41 CCCAGTTCGCTGCGCAAACACATGAAGGTAATCGCCGCACT CCCAGTTCGCTGCGCAAACACATTAAGGTAATCGCCGCACT < 41bp 0.825436323653493 0.467178658045554 0.40259665 0.09492245 prediction 0.650872647306986 Functional Loss - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147130462 chr3:147130465 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51522 0 0 0 0 1 ZIC1 chr3:147130468 5'GT 147130468 Upstream 4bp
chr18 56348415 56348415 1 + G T LUSC 56348412 + 56348392 56348432 41 TTGCTTTCAGTTGCCTAGACCTGGAGCAGTGTTCTCTTAAG TTGCTTTCAGTTGCCTAGACCTGTAGCAGTGTTCTCTTAAG < 41bp 0.825409223840794 0.468519073493798 0.43053836 0.25532797 prediction 0.650818447681589 Functional Loss - MALT1 ENSG00000172175 CDS Human protein_coding chr18:56348412 chr18:56348415 stopgain 1.000 1 24 hm5C_associated_SNPs_51524 0 0 1 0 1 MALT1 chr18:56348402 3'AG 56348402 Downstream 14bp
chr11 67379610 67379610 1 + G T UCEC 67379607 + 67379587 67379627 41 GCAGGTGTGGACTGGATGAACAAGGTGATGGCACGTTTCGT GCAGGTGTGGACTGGATGAACAATGTGATGGCACGTTTCGT < 41bp 0.871452135474829 0.546049510478044 0.89742225 0.3700639 prediction 0.650805249993571 Functional Loss - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67379607 chr11:67379610 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51525 0 0 1 0 1 NDUFV1 chr11:67379591 3'AG 67379591 Downstream 20bp
chr7 48146585 48146585 1 + G T GBM 48146582 + 48146562 48146602 41 ATCCGGAAAACGGACCTTAACAAGAAGCTGGTGCAGGAGCT ATCCGGAAAACGGACCTTAACAATAAGCTGGTGCAGGAGCT < 41bp 0.839671856560209 0.514275309385446 0.43685442 0.09497005 prediction 0.650793094349524 Functional Loss - UPP1 ENSG00000183696 CDS Human protein_coding chr7:48146582 chr7:48146585 nonsynonymous SNV 0.285 1 24 hm5C_associated_SNPs_51526 0 0 1 0 1 UPP1 chr7:48146679 5'GT 48146679 Upstream 95bp
chr1 212792760 212792760 1 + A C UCS 212792756 + 212792736 212792776 41 AAGGCTCAGATTGAGGAGCTCAAGAACGAGAAGCAGCATTT AAGGCTCAGATTGAGGAGCTCAAGCACGAGAAGCAGCATTT < 41bp 0.825388958560019 0.461660124031118 0.14773378 0.08281928 prediction 0.650777917120038 Functional Loss - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212792756 chr1:212792760 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_51529 0 0 1 0 1 ATF3 chr1:212792700 3'AG 212792700 Downstream 61bp
chr10 116593078 116593078 1 + G T LUSC 116593075 + 116593055 116593095 41 TGGTTCAAGAAGAAAATGAACGGGAATCTGGAGAGACAGGG TGGTTCAAGAAGAAAATGAACGGTAATCTGGAGAGACAGGG < 41bp 0.846820758541743 0.521444836131971 0.83401346 0.7095293 prediction 0.650751844819544 Functional Loss - FAM160B1 ENSG00000151553 CDS Human protein_coding chr10:116593075 chr10:116593078 stopgain 0.999 1 24 hm5C_associated_SNPs_51531 0 0 1 0 2 FAM160B1 chr10:116592992 3'AG 116592992 Downstream 87bp
chr10 116593078 116593078 1 + G T LUSC 116593075 + 116593055 116593095 41 TGGTTCAAGAAGAAAATGAACGGGAATCTGGAGAGACAGGG TGGTTCAAGAAGAAAATGAACGGTAATCTGGAGAGACAGGG < 41bp 0.846820758541743 0.521444836131971 0.83401346 0.7095293 prediction 0.650751844819544 Functional Loss - FAM160B1 ENSG00000151553 CDS Human protein_coding chr10:116593075 chr10:116593078 stopgain 0.999 1 24 hm5C_associated_SNPs_51531 0 0 1 0 2 FAM160B1 chr10:116593161 5'GT 116593161 Upstream 84bp
chr22 39482368 39482368 1 + G T LUAD 39482365 + 39482345 39482385 41 TTCCCTTTTGGAAGCTGGACCTGGACCAGGACTACAGGGTT TTCCCTTTTGGAAGCTGGACCTGTACCAGGACTACAGGGTT < 41bp 0.825374851189736 0.456254257485406 0.41658565 0.34387437 prediction 0.650749702379472 Functional Loss - APOBEC3G ENSG00000239713 CDS Human protein_coding chr22:39482365 chr22:39482368 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_51532 0 0 0 0 1 APOBEC3G chr22:39482284 3'AG 39482284 Downstream 85bp
chr10 43609034 43609034 1 + G T ACC 43609031 + 43609011 43609051 41 CATTGTTGGGGGACACGAGCCTGGGGAGCCCCGGGGGATTA CATTGTTGGGGGACACGAGCCTGTGGAGCCCCGGGGGATTA < 41bp 0.876694829294545 0.551324012160379 0.9232881 0.64939857 prediction 0.650741634268332 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43609031 chr10:43609034 nonsynonymous SNV 0.002 4 24 hm5C_associated_SNPs_51533 0 0 0 0 1 RET chr10:43609004 3'AG 43609004 Downstream 31bp
chr11 76825384 76825384 1 + G T UCEC 76825381 + 76825361 76825401 41 TCTGAGCCCATCGACCTGACCGAGGGTGACTTTGCCAACGA TCTGAGCCCATCGACCTGACCGATGGTGACTTTGCCAACGA < 41bp 0.82535955086729 0.452908512610913 0.89986944 0.26048684 prediction 0.650719101734579 Functional Loss - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76825381 chr11:76825384 nonsynonymous SNV 0.266 3 24 hm5C_associated_SNPs_51534 0 0 0 0 2 CAPN5 chr11:76825288 3'AG 76825288 Downstream 97bp
chr11 76825384 76825384 1 + G T UCEC 76825381 + 76825361 76825401 41 TCTGAGCCCATCGACCTGACCGAGGGTGACTTTGCCAACGA TCTGAGCCCATCGACCTGACCGATGGTGACTTTGCCAACGA < 41bp 0.82535955086729 0.452908512610913 0.89986944 0.26048684 prediction 0.650719101734579 Functional Loss - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76825381 chr11:76825384 nonsynonymous SNV 0.266 3 24 hm5C_associated_SNPs_51534 0 0 0 0 2 CAPN5 chr11:76825480 5'GT 76825480 Upstream 97bp
chr19 11474845 11474845 1 + G T STAD 11474842 + 11474822 11474862 41 GTCTCTTTGTCTCAGGAACCCGAGGTCTGCAGGCCGCATTC GTCTCTTTGTCTCAGGAACCCGATGTCTGCAGGCCGCATTC < 41bp 0.876893300686 0.551548288767699 0.933892 0.6247693 prediction 0.650690023836603 Functional Loss - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11474842 chr19:11474845 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_51535 0 0 1 0 2 PLPPR2 chr19:11474837 3'AG 11474837 Downstream 9bp
chr19 11474845 11474845 1 + G T STAD 11474842 + 11474822 11474862 41 GTCTCTTTGTCTCAGGAACCCGAGGTCTGCAGGCCGCATTC GTCTCTTTGTCTCAGGAACCCGATGTCTGCAGGCCGCATTC < 41bp 0.876893300686 0.551548288767699 0.933892 0.6247693 prediction 0.650690023836603 Functional Loss - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11474842 chr19:11474845 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_51535 0 0 1 0 2 PLPPR2 chr19:11474888 5'GT 11474888 Upstream 44bp
chr3 186505598 186505598 1 + G T UCEC 186505595 + 186505575 186505615 41 ATGCCATTGTGTTTCAGGCTCGCGGGATTGATGTGCAACAA ATGCCATTGTGTTTCAGGCTCGCTGGATTGATGTGCAACAA < 41bp 0.836954568721447 0.511713844371144 0.51355577 0.09392592 prediction 0.650481448700607 Functional Loss - EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186505595 chr3:186505598 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51542 0 0 1 4 2 EIF4A2 chr3:186505592 3'AG 186505592 Downstream 7bp
chr3 186505598 186505598 1 + G T UCEC 186505595 + 186505575 186505615 41 ATGCCATTGTGTTTCAGGCTCGCGGGATTGATGTGCAACAA ATGCCATTGTGTTTCAGGCTCGCTGGATTGATGTGCAACAA < 41bp 0.836954568721447 0.511713844371144 0.51355577 0.09392592 prediction 0.650481448700607 Functional Loss - EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186505595 chr3:186505598 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51542 0 0 1 4 2 EIF4A2 chr3:186505671 5'GT 186505671 Upstream 74bp
chr11 558747 558747 1 - C A rs535898670 558750 - 558730 558770 41 GCAGGTTGGCTCTTGAGTCCCTGGACCCTCGCACACTGCGG GCAGGTTGGCTCTTGAGTCCCTGTACCCTCGCACACTGCGG < 41bp 0.871029037196395 0.54578956314305 0.23363265 0.04612866 prediction 0.65047894810669 Functional Loss - LMNTD2 ENSG00000185522 CDS Human protein_coding chr11:558750 chr11:558747 nonsynonymous SNV 0.138 3 24 hm5C_associated_SNPs_51543 0 0 0 0 1 LMNTD2 chr11:558766 3'AG 558766 Downstream 20bp
chr19 5668206 5668206 1 + G T LUSC 5668203 + 5668183 5668223 41 TTTGCCCCAGGCGGGGCCTCCCGGGGCCACCCCATCCCACA TTTGCCCCAGGCGGGGCCTCCCGTGGCCACCCCATCCCACA < 41bp 0.864827743789742 0.539624784046646 0.91797644 0.5460925 prediction 0.650405919486191 Functional Loss - SAFB ENSG00000160633 CDS Human protein_coding chr19:5668203 chr19:5668206 synonymous SNV . 0 24 hm5C_associated_SNPs_51546 0 0 1 0 1 SAFB chr19:5668173 3'AG 5668173 Downstream 34bp
chr1 151504962 151504962 1 + G T BLCA 151504959 + 151504939 151504979 41 ATTATAAGGAAAAGGCCCGGCGGGAGGTGGCAGATGCCCAG ATTATAAGGAAAAGGCCCGGCGGTAGGTGGCAGATGCCCAG < 41bp 0.857349860948243 0.532172619259769 0.8941133 0.8558443 prediction 0.650354483376948 Functional Loss - CGN ENSG00000143375 CDS Human protein_coding chr1:151504959 chr1:151504962 stopgain 0.998 1 24 hm5C_associated_SNPs_51549 0 0 0 0 2 CGN chr1:151504878 3'AG 151504878 Downstream 85bp
chr1 151504962 151504962 1 + G T BLCA 151504959 + 151504939 151504979 41 ATTATAAGGAAAAGGCCCGGCGGGAGGTGGCAGATGCCCAG ATTATAAGGAAAAGGCCCGGCGGTAGGTGGCAGATGCCCAG < 41bp 0.857349860948243 0.532172619259769 0.8941133 0.8558443 prediction 0.650354483376948 Functional Loss - CGN ENSG00000143375 CDS Human protein_coding chr1:151504959 chr1:151504962 stopgain 0.998 1 24 hm5C_associated_SNPs_51549 0 0 0 0 2 CGN chr1:151505048 5'GT 151505048 Upstream 87bp
chr17 27047774 27047774 1 + G T UCEC 27047771 + 27047751 27047791 41 AAAGCGAAGGCTTTAAAGGCCAAGAAGGCAGTGTTGAAAGG AAAGCGAAGGCTTTAAAGGCCAATAAGGCAGTGTTGAAAGG < 41bp 0.825165710538965 0.468105976718716 0.03269258 0.028321117 prediction 0.650331421077931 Functional Loss - RPL23A ENSG00000198242 CDS Human protein_coding chr17:27047771 chr17:27047774 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_51550 0 0 0 0 1 RPL23A chr17:27047725 3'AG 27047725 Downstream 50bp
chr1 171300844 171300844 1 + G T LUAD 171300841 + 171300821 171300861 41 ACAAGATCCCAGAAGGCTTTCAGGGCAAACGCGTCTTGGTG ACAAGATCCCAGAAGGCTTTCAGTGCAAACGCGTCTTGGTG < 41bp 0.825131795597278 0.456808603083832 0.9234748 0.17372197 prediction 0.650263591194556 Functional Loss - FMO4 ENSG00000076258 CDS Human protein_coding chr1:171300841 chr1:171300844 nonsynonymous SNV 0.010 3 24 hm5C_associated_SNPs_51553 0 0 0 0 2 FMO4 chr1:171300779 3'AG 171300779 Downstream 66bp
chr1 171300844 171300844 1 + G T LUAD 171300841 + 171300821 171300861 41 ACAAGATCCCAGAAGGCTTTCAGGGCAAACGCGTCTTGGTG ACAAGATCCCAGAAGGCTTTCAGTGCAAACGCGTCTTGGTG < 41bp 0.825131795597278 0.456808603083832 0.9234748 0.17372197 prediction 0.650263591194556 Functional Loss - FMO4 ENSG00000076258 CDS Human protein_coding chr1:171300841 chr1:171300844 nonsynonymous SNV 0.010 3 24 hm5C_associated_SNPs_51553 0 0 0 0 2 FMO4 chr1:171300921 5'GT 171300921 Upstream 78bp
chr20 20051628 20051628 1 + G T BLCA 20051625 + 20051605 20051645 41 GGGTGTCAGTGTTCCGGGAGCTCGACAGTGACATCCCATGC GGGTGTCAGTGTTCCGGGAGCTCTACAGTGACATCCCATGC < 41bp 0.82511911718076 0.481940003664183 0.0554986 0.85627353 prediction 0.65023823436152 Functional Loss - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20051625 chr20:20051628 nonsynonymous SNV 0.928 2 24 hm5C_associated_SNPs_51554 0 0 0 0 1 CFAP61 chr20:20051648 5'GT 20051648 Upstream 21bp
chr19 10398376 10398376 1 + G T LUSC 10398373 + 10398353 10398393 41 GCCTGGAGCGCTTCACCGGCCTGGATCTGGCCAACGTGACC GCCTGGAGCGCTTCACCGGCCTGTATCTGGCCAACGTGACC < 41bp 0.863012495743953 0.537950794405553 0.06572932 0.014955848 prediction 0.6501234026768 Functional Loss - ICAM4 ENSG00000105371 CDS Human protein_coding chr19:10398373 chr19:10398376 nonsynonymous SNV 0.054 1 24 hm5C_associated_SNPs_51558 0 0 1 0 1 ICAM4 chr19:10398289 3'AG 10398289 Downstream 88bp
chr1 248039238 248039238 1 + G T LUSC 248039235 + 248039215 248039255 41 GGATCCCGCCACGGCGCACCCGAGTCTGCTCTTGACCGCCG GGATCCCGCCACGGCGCACCCGATTCTGCTCTTGACCGCCG < 41bp 0.825060127019229 0.455557309438108 0.10706109 0.020797074 prediction 0.650120254038458 Functional Loss - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039235 chr1:248039238 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_51559 0 0 0 0 1 TRIM58 chr1:248039202 3'AG 248039202 Downstream 37bp
chr19 16962246 16962246 1 + G T LAML 16962243 + 16962223 16962263 41 TTCACAGGAAACGGGCCGTGCGAGATGCACAGCGTGCAGAA TTCACAGGAAACGGGCCGTGCGATATGCACAGCGTGCAGAA < 41bp 0.825026909656616 0.457264619790597 0.797542 0.2647515 prediction 0.650053819313232 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16962243 chr19:16962246 nonsynonymous SNV 0.614 0 24 hm5C_associated_SNPs_51561 0 0 1 0 2 SIN3B chr19:16962223 3'AG 16962223 Downstream 24bp
chr19 16962246 16962246 1 + G T LAML 16962243 + 16962223 16962263 41 TTCACAGGAAACGGGCCGTGCGAGATGCACAGCGTGCAGAA TTCACAGGAAACGGGCCGTGCGATATGCACAGCGTGCAGAA < 41bp 0.825026909656616 0.457264619790597 0.797542 0.2647515 prediction 0.650053819313232 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16962243 chr19:16962246 nonsynonymous SNV 0.614 0 24 hm5C_associated_SNPs_51561 0 0 1 0 2 SIN3B chr19:16962345 5'GT 16962345 Upstream 100bp
chrX 21985363 21985363 1 + G T HNSC 21985361 + 21985341 21985381 41 TCCAGTCCATTTTCCAGGAGCAGGGGATGGCGGAGTCGGTG TCCAGTCCATTTTCCAGGAGCATGGGATGGCGGAGTCGGTG < 41bp 0.82693218659015 0.501907872607447 0.91130996 0.7653548 prediction 0.650048627965405 Functional Loss - SMS ENSG00000102172 CDS Human protein_coding chrX:21985361 chrX:21985363 nonsynonymous SNV 0.939 1 23 hm5C_associated_SNPs_51562 0 0 0 0 2 SMS chrX:21985314 3'AG 21985314 Downstream 50bp
chrX 21985363 21985363 1 + G T HNSC 21985361 + 21985341 21985381 41 TCCAGTCCATTTTCCAGGAGCAGGGGATGGCGGAGTCGGTG TCCAGTCCATTTTCCAGGAGCATGGGATGGCGGAGTCGGTG < 41bp 0.82693218659015 0.501907872607447 0.91130996 0.7653548 prediction 0.650048627965405 Functional Loss - SMS ENSG00000102172 CDS Human protein_coding chrX:21985361 chrX:21985363 nonsynonymous SNV 0.939 1 23 hm5C_associated_SNPs_51562 0 0 0 0 2 SMS chrX:21985434 5'GT 21985434 Upstream 72bp
chr15 22848249 22848249 1 + G T LIHC 22848246 + 22848226 22848266 41 ATCTCATTTCAGGTTACTTTCAGGAGTGAAAAAGCTCTTTA ATCTCATTTCAGGTTACTTTCAGTAGTGAAAAAGCTCTTTA < 41bp 0.845741624653577 0.520735100099794 0.90739524 0.28502125 prediction 0.650013049107566 Functional Loss - TUBGCP5 ENSG00000153575 CDS Human other chr15:22848246 chr15:22848249 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_51563 0 0 1 0 2 TUBGCP5 chr15:22848238 3'AG 22848238 Downstream 12bp
chr15 22848249 22848249 1 + G T LIHC 22848246 + 22848226 22848266 41 ATCTCATTTCAGGTTACTTTCAGGAGTGAAAAAGCTCTTTA ATCTCATTTCAGGTTACTTTCAGTAGTGAAAAAGCTCTTTA < 41bp 0.845741624653577 0.520735100099794 0.90739524 0.28502125 prediction 0.650013049107566 Functional Loss - TUBGCP5 ENSG00000153575 CDS Human other chr15:22848246 chr15:22848249 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_51563 0 0 1 0 2 TUBGCP5 chr15:22848331 5'GT 22848331 Upstream 83bp
chr19 56925772 56925772 1 + G T SKCM 56925769 + 56925749 56925789 41 TTGGAGCAAGGAAAAGAGCCCTGGATGGTGAAGAAGGAGGG TTGGAGCAAGGAAAAGAGCCCTGTATGGTGAAGAAGGAGGG < 41bp 0.860190867717412 0.535227461012629 0.39965722 0.47538465 prediction 0.649926813409565 Functional Loss - ZNF583 ENSG00000198440 CDS Human protein_coding chr19:56925769 chr19:56925772 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_51566 0 0 0 0 2 ZNF583 chr19:56925714 3'AG 56925714 Downstream 59bp
chr19 56925772 56925772 1 + G T SKCM 56925769 + 56925749 56925789 41 TTGGAGCAAGGAAAAGAGCCCTGGATGGTGAAGAAGGAGGG TTGGAGCAAGGAAAAGAGCCCTGTATGGTGAAGAAGGAGGG < 41bp 0.860190867717412 0.535227461012629 0.39965722 0.47538465 prediction 0.649926813409565 Functional Loss - ZNF583 ENSG00000198440 CDS Human protein_coding chr19:56925769 chr19:56925772 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_51566 0 0 0 0 2 ZNF583 chr19:56925809 5'GT 56925809 Upstream 38bp
chr13 111995213 111995213 1 + A C STAD 111995209 + 111995189 111995229 41 CATCCAGCAGCAAGTTAGGGCTGAAGCCTGCGAGTCCTGGG CATCCAGCAGCAAGTTAGGGCTGACGCCTGCGAGTCCTGGG < 41bp 0.824908355569267 0.46815916343806 0.2250931 0.1191017 prediction 0.649816711138534 Functional Loss - TEX29 ENSG00000153495 CDS Human protein_coding chr13:111995209 chr13:111995213 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_51572 0 0 0 0 1 TEX29 chr13:111995278 5'GT 111995278 Upstream 66bp
chr17 76134155 76134155 1 + G T UCEC 76134152 + 76134132 76134172 41 CGGGAGGAGTTCCTGGTCCCCAAGAATGTGCTGGACATCGT CGGGAGGAGTTCCTGGTCCCCAATAATGTGCTGGACATCGT < 41bp 0.867346794579665 0.542457511122512 0.6280242 0.4777867 prediction 0.649778566914306 Functional Loss - TMC8 ENSG00000167895 CDS Human protein_coding chr17:76134152 chr17:76134155 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_51574 0 0 0 0 1 TMC8 chr17:76134086 3'AG 76134086 Downstream 70bp
chr19 19349150 19349150 1 + G T UCEC 19349147 + 19349127 19349167 41 CGGAGGGCATGGGAAGATGCCGAGAAGGACTGCCGCCGCCG CGGAGGGCATGGGAAGATGCCGATAAGGACTGCCGCCGCCG < 41bp 0.869595344256091 0.544783199823727 0.86034465 0.35679835 prediction 0.649624288864729 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19349147 chr19:19349150 nonsynonymous SNV 0.834 3 24 hm5C_associated_SNPs_51578 0 0 0 0 2 NCAN chr19:19349062 3'AG 19349062 Downstream 89bp
chr19 19349150 19349150 1 + G T UCEC 19349147 + 19349127 19349167 41 CGGAGGGCATGGGAAGATGCCGAGAAGGACTGCCGCCGCCG CGGAGGGCATGGGAAGATGCCGATAAGGACTGCCGCCGCCG < 41bp 0.869595344256091 0.544783199823727 0.86034465 0.35679835 prediction 0.649624288864729 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19349147 chr19:19349150 nonsynonymous SNV 0.834 3 24 hm5C_associated_SNPs_51578 0 0 0 0 2 NCAN chr19:19349220 5'GT 19349220 Upstream 71bp
chr20 30522575 30522575 1 + G T LUAD 30522572 + 30522552 30522592 41 GAGGCAGTGGAGACACTCTTCAGGGACATCGACAACATCTT GAGGCAGTGGAGACACTCTTCAGTGACATCGACAACATCTT < 41bp 0.824772055918489 0.458513527489832 0.49422726 0.14212826 prediction 0.649544111836978 Functional Loss - TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30522572 chr20:30522575 nonsynonymous SNV 0.898 0 24 hm5C_associated_SNPs_51580 0 0 0 0 1 TTLL9 chr20:30522495 3'AG 30522495 Downstream 81bp
chr7 100304462 100304462 1 + A C KIRC 100304458 + 100304438 100304478 41 CGCCAGGGCACACAGCATGGCAGAAAACCGAGAGCCCCGCG CGCCAGGGCACACAGCATGGCAGACAACCGAGAGCCCCGCG < 41bp 0.862931150221523 0.538169203659757 0.29123694 0.23910901 prediction 0.649523893123532 Functional Loss - POP7 ENSG00000172336 CDS Human protein_coding chr7:100304458 chr7:100304462 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_51581 0 0 1 0 1 POP7 chr7:100304444 3'AG 100304444 Downstream 19bp
chr2 130737709 130737709 1 - C A KIRC 130737712 - 130737692 130737732 41 TTGAATTTCCTCAGCGGATTCCCGAAGTCTCCGCCCGCGGA TTGAATTTCCTCAGCGGATTCCCTAAGTCTCCGCCCGCGGA < 41bp 0.855250116971504 0.530530582289174 0.6363834 0.1593777 prediction 0.64943906936466 Functional Loss - RAB6C ENSG00000222014 CDS Human protein_coding chr2:130737712 chr2:130737709 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_51582 0 0 0 0 1 RAB6C chr2:130737742 3'AG 130737742 Downstream 34bp
chr3 119459492 119459492 1 + A C LUSC 119459488 + 119459468 119459508 41 GAAAAGCTGGTGAAAAAAGCCGAGAAGCAAGTGACCCTGGC GAAAAGCTGGTGAAAAAAGCCGAGCAGCAAGTGACCCTGGC < 41bp 0.871000146946111 0.546329847306465 0.8570236 0.52721465 prediction 0.649340599279293 Functional Loss - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119459488 chr3:119459492 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_51586 0 0 0 0 2 MAATS1 chr3:119459396 3'AG 119459396 Downstream 97bp
chr3 119459492 119459492 1 + A C LUSC 119459488 + 119459468 119459508 41 GAAAAGCTGGTGAAAAAAGCCGAGAAGCAAGTGACCCTGGC GAAAAGCTGGTGAAAAAAGCCGAGCAGCAAGTGACCCTGGC < 41bp 0.871000146946111 0.546329847306465 0.8570236 0.52721465 prediction 0.649340599279293 Functional Loss - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119459488 chr3:119459492 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_51586 0 0 0 0 2 MAATS1 chr3:119459542 5'GT 119459542 Upstream 51bp
chr21 47406575 47406575 1 + G T COAD 47406572 + 47406552 47406592 41 CACCTGGGCGTCAAAGTCTTCTCGGTGGCCATCACACCCGA CACCTGGGCGTCAAAGTCTTCTCTGTGGCCATCACACCCGA < 41bp 0.859251744968109 0.534619601230039 0.36916983 0.3310238 prediction 0.649264287476139 Functional Loss - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47406572 chr21:47406575 synonymous SNV . 0 24 hm5C_associated_SNPs_51589 0 0 0 0 1 COL6A1 chr21:47406599 5'GT 47406599 Upstream 25bp
chr15 41191388 41191388 1 + G T COAD 41191385 + 41191365 41191405 41 AGCAGCACGGAGGTCCTCTACGTGAACCGAAATGGACAGAA AGCAGCACGGAGGTCCTCTACGTTAACCGAAATGGACAGAA < 41bp 0.824578821194865 0.471906059570325 0.2767216 0.24205303 prediction 0.64915764238973 Functional Loss - VPS18 ENSG00000104142 CDS Human protein_coding chr15:41191385 chr15:41191388 synonymous SNV . 0 24 hm5C_associated_SNPs_51592 0 0 0 0 1 VPS18 chr15:41191342 3'AG 41191342 Downstream 47bp
chr13 108922545 108922545 1 + G T UCEC 108922542 + 108922522 108922562 41 AGGAGCAGGAGCCCCCAAGGCCGGCCTGGAGGAAGCTCCAG AGGAGCAGGAGCCCCCAAGGCCGTCCTGGAGGAAGCTCCAG < 41bp 0.857319763190183 0.532747746668703 0.31453428 0.2970717 prediction 0.64914403304296 Functional Loss - TNFSF13B ENSG00000102524 CDS Human protein_coding chr13:108922542 chr13:108922545 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_51594 0 0 0 0 1 TNFSF13B chr13:108922582 5'GT 108922582 Upstream 38bp
chr2 242089110 242089110 1 - C A rs3806600 242089113 - 242089093 242089133 41 CGCTACTCACCCATTTTGATCGCGAGTCGGGAGGAAACCGC CGCTACTCACCCATTTTGATCGCTAGTCGGGAGGAAACCGC < 41bp 0.825713104498223 0.501141546508802 0.9275282 0.31561956 prediction 0.649143115978842 Functional Loss - PASK;PPP1R7 ENSG00000115685;ENSG00000115687 UTR5 Human other chr2:242089113 chr2:242089110 . . 0 24 hm5C_associated_SNPs_51595 0 0 0 0 1 PASK;PPP1R7 chr2:242089023 5'GT 242089023 Upstream 88bp
chr20 20007548 20007548 1 + A C COAD 20007544 + 20007524 20007564 41 CTGCTAAACTTATGGAGTTACTAGAGGAGATTTCAGAAAGG CTGCTAAACTTATGGAGTTACTAGCGGAGATTTCAGAAAGG < 41bp 0.824568257807812 0.43939640075436 0.54812145 0.13945311 prediction 0.649136515615624 Functional Loss - NAA20 ENSG00000173418 CDS Human protein_coding chr20:20007544 chr20:20007548 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_51597 0 0 1 0 1 NAA20 chr20:20007563 5'GT 20007563 Upstream 16bp
chr1 243449654 243449654 1 + A C HNSC 243449650 + 243449630 243449670 41 GCTCCAGCAACAGCTAAAATCTCAAAGACAAGAGGAGACAC GCTCCAGCAACAGCTAAAATCTCACAGACAAGAGGAGACAC < 41bp 0.824558578049774 0.417431406785151 0.84435093 0.26331705 prediction 0.649117156099548 Functional Loss - SDCCAG8 ENSG00000054282 CDS Human protein_coding chr1:243449650 chr1:243449654 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_51598 0 0 1 0 1 SDCCAG8 chr1:243449699 5'GT 243449699 Upstream 46bp
chr1 156316575 156316575 1 + G T UCEC 156316572 + 156316552 156316592 41 TCTGGAGTTGATCACAAGCCCAAGGAATGCCTAGGACTCCT TCTGGAGTTGATCACAAGCCCAATGAATGCCTAGGACTCCT < 41bp 0.824552773092083 0.454676698824482 0.37473375 0.14368051 prediction 0.649105546184166 Functional Loss - TSACC ENSG00000163467 CDS Human protein_coding chr1:156316572 chr1:156316575 stopgain 0.993 1 24 hm5C_associated_SNPs_51599 0 0 0 0 1 TSACC chr1:156316559 3'AG 156316559 Downstream 17bp
chr11 126176481 126176481 1 + G T LUAD 126176478 + 126176458 126176498 41 CCCACAGGTGAATGAGGCCTCTGGGGATGGGGATGGAGAGG CCCACAGGTGAATGAGGCCTCTGTGGATGGGGATGGAGAGG < 41bp 0.870723478925862 0.546184234809554 0.88600767 0.4980852 prediction 0.649078488232616 Functional Loss - DCPS ENSG00000110063 CDS Human protein_coding chr11:126176478 chr11:126176481 nonsynonymous SNV 0.101 1 24 hm5C_associated_SNPs_51600 0 0 1 0 1 DCPS chr11:126176465 3'AG 126176465 Downstream 17bp
chr8 99161225 99161225 1 + G T OV 99161222 + 99161202 99161242 41 AAGGGCTGGGGCATGGCTTTCTGGATTCCATTTGTAAGTTA AAGGGCTGGGGCATGGCTTTCTGTATTCCATTTGTAAGTTA < 41bp 0.838957782222351 0.514442483476794 0.38987797 0.12698242 prediction 0.649030597491115 Functional Loss - POP1 ENSG00000104356 CDS Human protein_coding chr8:99161222 chr8:99161225 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51602 0 0 0 0 1 POP1 chr8:99161234 5'GT 99161234 Upstream 10bp
chr20 30584346 30584346 1 + A C COAD 30584342 + 30584322 30584362 41 GCCTCCCTCGTGTCTCTGGCCTGGACGCTGGCCTCCTACCA GCCTCCCTCGTGTCTCTGGCCTGGCCGCTGGCCTCCTACCA < 41bp 0.876788510866918 0.552275263344383 0.29834634 0.18777531 prediction 0.64902649504507 Functional Loss - XKR7 ENSG00000260903 CDS Human protein_coding chr20:30584342 chr20:30584346 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_51603 0 0 0 0 1 XKR7 chr20:30584308 3'AG 30584308 Downstream 39bp
chr4 15565120 15565120 1 + A C rs148194457 15565116 + 15565096 15565136 41 GTGAACATTGTGCGAGCTTACGACATTCCAGTGAGGAAGCC GTGAACATTGTGCGAGCTTACGACCTTCCAGTGAGGAAGCC < 41bp 0.82447791564607 0.44681598321059 0.1606321 0.11775184 prediction 0.64895583129214 Functional Loss - CC2D2A ENSG00000048342 CDS Human protein_coding chr4:15565116 chr4:15565120 nonsynonymous SNV 0.098 2 25 hm5C_associated_SNPs_51606 0 0 0 3 1 CC2D2A chr4:15565145 5'GT 15565145 Upstream 26bp
chr1 55145629 55145629 1 + G T ESCA 55145627 + 55145607 55145647 41 TCCAGGAGCCTCGGGCCCGCCAGGTGGCCCTGCTGCCCGTC TCCAGGAGCCTCGGGCCCGCCATGTGGCCCTGCTGCCCGTC < 41bp 0.824471274300768 0.494329799649399 0.93869185 0.36332244 prediction 0.648942548601535 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55145627 chr1:55145629 nonsynonymous SNV 0.878 0 23 hm5C_associated_SNPs_51608 0 0 0 0 2 MROH7 chr1:55145564 3'AG 55145564 Downstream 66bp
chr1 55145629 55145629 1 + G T ESCA 55145627 + 55145607 55145647 41 TCCAGGAGCCTCGGGCCCGCCAGGTGGCCCTGCTGCCCGTC TCCAGGAGCCTCGGGCCCGCCATGTGGCCCTGCTGCCCGTC < 41bp 0.824471274300768 0.494329799649399 0.93869185 0.36332244 prediction 0.648942548601535 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55145627 chr1:55145629 nonsynonymous SNV 0.878 0 23 hm5C_associated_SNPs_51608 0 0 0 0 2 MROH7 chr1:55145718 5'GT 55145718 Upstream 90bp
chr9 126777416 126777416 1 + G T COAD 126777414 + 126777394 126777434 41 CCTACAGGCGCTTCTCTGTGCAGCGCTGCGCCCGCTGCCAC CCTACAGGCGCTTCTCTGTGCATCGCTGCGCCCGCTGCCAC < 41bp 0.826465831390606 0.502021182927132 0.8841233 0.3841064 prediction 0.648889296926947 Functional Loss - LHX2 ENSG00000106689 CDS Human protein_coding chr9:126777414 chr9:126777416 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_51610 0 0 1 0 2 LHX2 chr9:126777377 3'AG 126777377 Downstream 40bp
chr9 126777416 126777416 1 + G T COAD 126777414 + 126777394 126777434 41 CCTACAGGCGCTTCTCTGTGCAGCGCTGCGCCCGCTGCCAC CCTACAGGCGCTTCTCTGTGCATCGCTGCGCCCGCTGCCAC < 41bp 0.826465831390606 0.502021182927132 0.8841233 0.3841064 prediction 0.648889296926947 Functional Loss - LHX2 ENSG00000106689 CDS Human protein_coding chr9:126777414 chr9:126777416 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_51610 0 0 1 0 2 LHX2 chr9:126777401 3'AG 126777401 Downstream 16bp
chr5 23521247 23521247 1 + G T LUSC 23521244 + 23521224 23521264 41 TCAGAAACCAGTGTCCCCTTCTGGAGAAGCAAGTACCTCTG TCAGAAACCAGTGTCCCCTTCTGTAGAAGCAAGTACCTCTG < 41bp 0.865281681889778 0.540891838436834 0.4713764 0.2787069 prediction 0.64877968690589 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23521244 chr5:23521247 nonsynonymous SNV 0.041 2 24 hm5C_associated_SNPs_51617 0 0 0 0 1 PRDM9 chr5:23521288 5'GT 23521288 Upstream 42bp
chr5 147661765 147661765 1 + G T OV 147661762 + 147661742 147661782 41 GCCTCAAATGGCCACACTTTCCAGAATGAGTGTTTCTTTTG GCCTCAAATGGCCACACTTTCCATAATGAGTGTTTCTTTTG < 41bp 0.824374967238383 0.486707990914304 0.3405922 0.117449164 prediction 0.648749934476765 Functional Loss - SPINK13 ENSG00000214510 CDS Human protein_coding chr5:147661762 chr5:147661765 nonsynonymous SNV 0.834 2 24 hm5C_associated_SNPs_51619 0 0 1 0 2 SPINK13 chr5:147661667 3'AG 147661667 Downstream 99bp
chr5 147661765 147661765 1 + G T OV 147661762 + 147661742 147661782 41 GCCTCAAATGGCCACACTTTCCAGAATGAGTGTTTCTTTTG GCCTCAAATGGCCACACTTTCCATAATGAGTGTTTCTTTTG < 41bp 0.824374967238383 0.486707990914304 0.3405922 0.117449164 prediction 0.648749934476765 Functional Loss - SPINK13 ENSG00000214510 CDS Human protein_coding chr5:147661762 chr5:147661765 nonsynonymous SNV 0.834 2 24 hm5C_associated_SNPs_51619 0 0 1 0 2 SPINK13 chr5:147661794 5'GT 147661794 Upstream 30bp
chr13 31835151 31835151 1 + G T UCEC 31835148 + 31835128 31835168 41 ATTCACCATTATGCCTTTTCCGAGAATCCTACAGTTTTTAA ATTCACCATTATGCCTTTTCCGATAATCCTACAGTTTTTAA < 41bp 0.824360873144008 0.481357080398039 0.74195457 0.16376388 prediction 0.648721746288017 Functional Loss - B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31835148 chr13:31835151 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_51622 0 0 1 0 2 B3GLCT chr13:31835083 3'AG 31835083 Downstream 69bp
chr13 31835151 31835151 1 + G T UCEC 31835148 + 31835128 31835168 41 ATTCACCATTATGCCTTTTCCGAGAATCCTACAGTTTTTAA ATTCACCATTATGCCTTTTCCGATAATCCTACAGTTTTTAA < 41bp 0.824360873144008 0.481357080398039 0.74195457 0.16376388 prediction 0.648721746288017 Functional Loss - B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31835148 chr13:31835151 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_51622 0 0 1 0 2 B3GLCT chr13:31835219 5'GT 31835219 Upstream 69bp
chr19 4318467 4318467 1 + G T THYM 4318464 + 4318444 4318484 41 AAGGCTCGCGAGAAAGATGGCAAGGGGCGGACGGCGTCTCC AAGGCTCGCGAGAAAGATGGCAATGGGCGGACGGCGTCTCC < 41bp 0.824346902450111 0.450447990290109 0.8840389 0.8558508 prediction 0.648693804900223 Functional Loss - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4318464 chr19:4318467 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_51624 0 0 0 0 1 FSD1 chr19:4318502 5'GT 4318502 Upstream 36bp
chr7 150737658 150737658 1 + G T STAD 150737655 + 150737635 150737675 41 GAACCCCTGCATCCCACTGTCTGGGGGCTGCTGCGTCCCCA GAACCCCTGCATCCCACTGTCTGTGGGCTGCTGCGTCCCCA < 41bp 0.873393994863394 0.549086409037568 0.88437873 0.28074855 prediction 0.64861517165165 Functional Loss - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150737655 chr7:150737658 nonsynonymous SNV 0.719 2 24 hm5C_associated_SNPs_51625 0 0 0 0 3 ABCB8 chr7:150737585 3'AG 150737585 Downstream 74bp
chr7 150737658 150737658 1 + G T STAD 150737655 + 150737635 150737675 41 GAACCCCTGCATCCCACTGTCTGGGGGCTGCTGCGTCCCCA GAACCCCTGCATCCCACTGTCTGTGGGCTGCTGCGTCCCCA < 41bp 0.873393994863394 0.549086409037568 0.88437873 0.28074855 prediction 0.64861517165165 Functional Loss - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150737655 chr7:150737658 nonsynonymous SNV 0.719 2 24 hm5C_associated_SNPs_51625 0 0 0 0 3 ABCB8 chr7:150737721 5'GT 150737721 Upstream 64bp
chr7 150737658 150737658 1 + G T STAD 150737655 + 150737635 150737675 41 GAACCCCTGCATCCCACTGTCTGGGGGCTGCTGCGTCCCCA GAACCCCTGCATCCCACTGTCTGTGGGCTGCTGCGTCCCCA < 41bp 0.873393994863394 0.549086409037568 0.88437873 0.28074855 prediction 0.64861517165165 Functional Loss - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150737655 chr7:150737658 nonsynonymous SNV 0.719 2 24 hm5C_associated_SNPs_51625 0 0 0 0 3 ABCB8 chr7:150737731 5'GT 150737731 Upstream 74bp
chr17 32957170 32957170 1 + G T LUSC 32957167 + 32957147 32957187 41 TCTGACAATGAAGACATCATCAAGGTGGGCATCCTGGAGGT TCTGACAATGAAGACATCATCAATGTGGGCATCCTGGAGGT < 41bp 0.824288587716428 0.462068399017701 0.8898511 0.34741503 prediction 0.648577175432856 Functional Loss - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32957167 chr17:32957170 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_51627 0 0 1 0 1 TMEM132E chr17:32957170 5'GT 32957170 Upstream 1bp
chr8 22438915 22438915 1 + G T UCEC 22438912 + 22438892 22438932 41 GTGGCCGAGCGGGGCAAAGCCAAGGACGCTGACCTCCGGCC GTGGCCGAGCGGGGCAAAGCCAATGACGCTGACCTCCGGCC < 41bp 0.881517160072752 0.557249969845703 0.89631736 0.36422247 prediction 0.648534380454098 Functional Loss - PDLIM2 ENSG00000120913 CDS Human protein_coding chr8:22438912 chr8:22438915 nonsynonymous SNV 0.078 0 24 hm5C_associated_SNPs_51629 0 0 0 0 1 PDLIM2 chr8:22438892 3'AG 22438892 Downstream 24bp
chr7 1273324 1273324 1 + G T HNSC 1273321 + 1273301 1273341 41 GCGCCTAGACCTGGTCGAGTCCCGAGTTCAGGTAAAGACCC GCGCCTAGACCTGGTCGAGTCCCTAGTTCAGGTAAAGACCC < 41bp 0.824255826740226 0.487892729247862 0.2951817 0.18473884 prediction 0.648511653480451 Functional Loss - UNCX ENSG00000164853 CDS Human protein_coding chr7:1273321 chr7:1273324 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51630 0 0 0 0 1 UNCX chr7:1273331 5'GT 1273331 Upstream 8bp
chr11 65632610 65632610 1 + G T GBM 65632607 + 65632587 65632627 41 GACTTCAACGCAGGAGCCATCAAGAATAAGGTACTGTCTCT GACTTCAACGCAGGAGCCATCAATAATAAGGTACTGTCTCT < 41bp 0.8501030731828 0.52593751830696 0.53409916 0.25447935 prediction 0.648331109751679 Functional Loss - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65632607 chr11:65632610 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_51636 0 0 1 0 1 MUS81 chr11:65632616 5'GT 65632616 Upstream 7bp
chr12 113433136 113433136 1 + G T UCEC 113433133 + 113433113 113433153 41 ATCCCAGCCCCTGGATCTATCGAGAGCTCAAAAGATCCTTG ATCCCAGCCCCTGGATCTATCGATAGCTCAAAAGATCCTTG < 41bp 0.824153141940719 0.464020613472992 0.92762756 0.16491976 prediction 0.648306283881438 Functional Loss - OAS2 ENSG00000111335 CDS Human protein_coding chr12:113433133 chr12:113433136 stopgain 0.560 0 24 hm5C_associated_SNPs_51638 0 0 0 0 1 OAS2 chr12:113433101 3'AG 113433101 Downstream 36bp
chr7 148481087 148481087 1 + A C LUAD 148481083 + 148481063 148481103 41 GCTTGTGGTCGCTTCATAAACAACAACGCGGTTACCAAGAT GCTTGTGGTCGCTTCATAAACAACCACGCGGTTACCAAGAT < 41bp 0.824125920267261 0.419435799917741 0.03287986 0.039172143 prediction 0.648251840534523 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148481083 chr7:148481087 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_51641 0 0 1 0 2 CUL1 chr7:148481063 3'AG 148481063 Downstream 25bp
chr7 148481087 148481087 1 + A C LUAD 148481083 + 148481063 148481103 41 GCTTGTGGTCGCTTCATAAACAACAACGCGGTTACCAAGAT GCTTGTGGTCGCTTCATAAACAACCACGCGGTTACCAAGAT < 41bp 0.824125920267261 0.419435799917741 0.03287986 0.039172143 prediction 0.648251840534523 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148481083 chr7:148481087 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_51641 0 0 1 0 2 CUL1 chr7:148481169 5'GT 148481169 Upstream 83bp
chr9 130565267 130565267 1 + A C rs10760502 130565263 + 130565243 130565283 41 CTGGCAGCGGCGTCTGCGCGCGGCATAACGACCCAGGTCGC CTGGCAGCGGCGTCTGCGCGCGGCCTAACGACCCAGGTCGC < 41bp 0.824122624792367 0.487405185744145 0.8731458 0.8510825 prediction 0.648245249584733 Functional Loss - FPGS ENSG00000136877 CDS Human protein_coding chr9:130565263 chr9:130565267 nonsynonymous SNV 0.020 0 25 hm5C_associated_SNPs_51642 0 0 1 0 1 FPGS chr9:130565341 5'GT 130565341 Upstream 75bp
chr19 41594917 41594917 1 + G T UCEC 41594914 + 41594894 41594934 41 CTGTGCGGACATGATGCCGTCAAGGAGGCTCTGGTGGACCA CTGTGCGGACATGATGCCGTCAATGAGGCTCTGGTGGACCA < 41bp 0.871849147485816 0.547739838564241 0.8726108 0.16912681 prediction 0.64821861784315 Functional Loss - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41594914 chr19:41594917 nonsynonymous SNV 0.245 3 24 hm5C_associated_SNPs_51643 0 0 0 0 2 CYP2A13 chr19:41594834 3'AG 41594834 Downstream 84bp
chr19 41594917 41594917 1 + G T UCEC 41594914 + 41594894 41594934 41 CTGTGCGGACATGATGCCGTCAAGGAGGCTCTGGTGGACCA CTGTGCGGACATGATGCCGTCAATGAGGCTCTGGTGGACCA < 41bp 0.871849147485816 0.547739838564241 0.8726108 0.16912681 prediction 0.64821861784315 Functional Loss - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41594914 chr19:41594917 nonsynonymous SNV 0.245 3 24 hm5C_associated_SNPs_51643 0 0 0 0 2 CYP2A13 chr19:41594996 5'GT 41594996 Upstream 80bp
chr10 7839091 7839091 1 + G T KIRC 7839088 + 7839068 7839108 41 GGTAGCGGCAGCAAAATATGCCCGAGCTGAGAGAGAGCTGA GGTAGCGGCAGCAAAATATGCCCTAGCTGAGAGAGAGCTGA < 41bp 0.82408256598157 0.480539385533582 0.07185441 0.03611079 prediction 0.648165131963139 Functional Loss - ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7839088 chr10:7839091 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_51647 0 0 1 0 2 ATP5C1 chr10:7839010 3'AG 7839010 Downstream 82bp
chr10 7839091 7839091 1 + G T KIRC 7839088 + 7839068 7839108 41 GGTAGCGGCAGCAAAATATGCCCGAGCTGAGAGAGAGCTGA GGTAGCGGCAGCAAAATATGCCCTAGCTGAGAGAGAGCTGA < 41bp 0.82408256598157 0.480539385533582 0.07185441 0.03611079 prediction 0.648165131963139 Functional Loss - ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7839088 chr10:7839091 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_51647 0 0 1 0 2 ATP5C1 chr10:7839141 5'GT 7839141 Upstream 51bp
chr22 38212280 38212280 1 + G T LUAD 38212277 + 38212257 38212297 41 ACCCCATCTGCCCTGTGATGCTGGGTGATGCCCGGCTGGCC ACCCCATCTGCCCTGTGATGCTGTGTGATGCCCGGCTGGCC < 41bp 0.873975744081609 0.54991267523797 0.90917385 0.40657994 prediction 0.648126137687277 Functional Loss - GCAT ENSG00000100116 CDS Human protein_coding chr22:38212277 chr22:38212280 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_51649 0 0 1 0 2 GCAT chr22:38212207 3'AG 38212207 Downstream 74bp
chr22 38212280 38212280 1 + G T LUAD 38212277 + 38212257 38212297 41 ACCCCATCTGCCCTGTGATGCTGGGTGATGCCCGGCTGGCC ACCCCATCTGCCCTGTGATGCTGTGTGATGCCCGGCTGGCC < 41bp 0.873975744081609 0.54991267523797 0.90917385 0.40657994 prediction 0.648126137687277 Functional Loss - GCAT ENSG00000100116 CDS Human protein_coding chr22:38212277 chr22:38212280 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_51649 0 0 1 0 2 GCAT chr22:38212328 5'GT 38212328 Upstream 49bp
chr11 82874805 82874805 1 + G T LUAD 82874802 + 82874782 82874822 41 CTTTGAAGAAACTTTATGCCCTGGATGTCAGAGTCAATTCA CTTTGAAGAAACTTTATGCCCTGTATGTCAGAGTCAATTCA < 41bp 0.848450509618856 0.524409854698213 0.013187826 0.003939122 prediction 0.648081309841287 Functional Loss - PCF11 ENSG00000165494 CDS Human protein_coding chr11:82874802 chr11:82874805 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51650 0 0 1 0 1 PCF11 chr11:82874721 3'AG 82874721 Downstream 85bp
chrX 69424309 69424309 1 + G T LUSC 69424306 + 69424286 69424326 41 ATTTCTGTACCTTCCATGGCCGGGGCTTCACTCGCGGATCC ATTTCTGTACCTTCCATGGCCGGTGCTTCACTCGCGGATCC < 41bp 0.876236743828512 0.552209393904129 0.9329562 0.35077095 prediction 0.648054699848768 Functional Loss - DGAT2L6 ENSG00000184210 CDS Human protein_coding chrX:69424306 chrX:69424309 nonsynonymous SNV 0.064 4 24 hm5C_associated_SNPs_51651 0 0 0 0 1 DGAT2L6 chrX:69424366 5'GT 69424366 Upstream 58bp
chr17 16326005 16326005 1 + A C rs1129235 16326001 + 16325981 16326021 41 ATTCTGCCACTGCTGCAGATCGACAGGGACTCTGGCAATCC ATTCTGCCACTGCTGCAGATCGACCGGGACTCTGGCAATCC < 41bp 0.824025931287241 0.430509801094931 0.3385074 0.2628808 prediction 0.648051862574482 Functional Loss - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16326001 chr17:16326005 synonymous SNV . 0 25 hm5C_associated_SNPs_51652 0 0 0 0 1 TRPV2 chr17:16325913 3'AG 16325913 Downstream 93bp
chr17 4433952 4433952 1 + G T LIHC 4433950 + 4433930 4433970 41 TTCTGGCTGCTGGTCCTGTCCCGGGGGCTGGTGGGCATCGG TTCTGGCTGCTGGTCCTGTCCCTGGGGCTGGTGGGCATCGG < 41bp 0.82933343474286 0.505386008211941 0.9502547 0.43057105 prediction 0.647894853061838 Functional Loss - SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4433950 chr17:4433952 nonsynonymous SNV 0.987 4 23 hm5C_associated_SNPs_51654 0 0 0 0 1 SPNS2 chr17:4433927 3'AG 4433927 Downstream 26bp
chrX 47044595 47044595 1 + G T LUAD 47044592 + 47044572 47044612 41 CAGATGCTGGCTATGCCATCCTCGAGAAGAAGGTGTGTTGG CAGATGCTGGCTATGCCATCCTCTAGAAGAAGGTGTGTTGG < 41bp 0.851424076924452 0.527486198970815 0.7927706 0.90875995 prediction 0.647875755907274 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47044592 chrX:47044595 stopgain 0.988 1 24 hm5C_associated_SNPs_51656 0 0 1 0 1 RBM10 chrX:47044603 5'GT 47044603 Upstream 9bp
chr22 50946857 50946857 1 + G T READ 50946854 + 50946834 50946874 41 AGGTGGACGTGGCGGCCCAGCTGGGCGAGTATCTGGAGGAG AGGTGGACGTGGCGGCCCAGCTGTGCGAGTATCTGGAGGAG < 41bp 0.856691340993347 0.532764261688878 0.5676472 0.11043757 prediction 0.647854158608939 Functional Loss - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50946854 chr22:50946857 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51658 0 0 1 0 1 NCAPH2 chr22:50946874 5'GT 50946874 Upstream 18bp
chr22 43520095 43520095 1 + G T UCEC 43520092 + 43520072 43520112 41 CCCTCCTGTATGAGCAGCTCCTGGAACCCCCGACCATGGAG CCCTCCTGTATGAGCAGCTCCTGTAACCCCCGACCATGGAG < 41bp 0.852316189073559 0.528411377896317 0.25151324 0.10830051 prediction 0.647809622354483 Functional Loss - BIK ENSG00000100290 CDS Human protein_coding chr22:43520092 chr22:43520095 stopgain 0.001 0 24 hm5C_associated_SNPs_51659 0 0 0 0 2 BIK chr22:43520022 3'AG 43520022 Downstream 74bp
chr22 43520095 43520095 1 + G T UCEC 43520092 + 43520072 43520112 41 CCCTCCTGTATGAGCAGCTCCTGGAACCCCCGACCATGGAG CCCTCCTGTATGAGCAGCTCCTGTAACCCCCGACCATGGAG < 41bp 0.852316189073559 0.528411377896317 0.25151324 0.10830051 prediction 0.647809622354483 Functional Loss - BIK ENSG00000100290 CDS Human protein_coding chr22:43520092 chr22:43520095 stopgain 0.001 0 24 hm5C_associated_SNPs_51659 0 0 0 0 2 BIK chr22:43520189 5'GT 43520189 Upstream 95bp
chr17 38445734 38445734 1 + G T LUSC 38445731 + 38445711 38445751 41 TTTTCCAAAAAGGAAGCTGTCTCGGGCATTGAACAAAGCTA TTTTCCAAAAAGGAAGCTGTCTCTGGCATTGAACAAAGCTA < 41bp 0.82388088241717 0.48494489073085 0.08794141 0.04700902 prediction 0.647761764834341 Functional Loss - CDC6 ENSG00000094804 CDS Human protein_coding chr17:38445731 chr17:38445734 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_51661 0 0 1 0 1 CDC6 chr17:38445660 3'AG 38445660 Downstream 75bp
chr5 176079789 176079789 1 + G T UCEC 176079787 + 176079767 176079807 41 CTTCTTCCTGGAGCTGGCAACAGGGATCCTGGCCTTTGTCT CTTCTTCCTGGAGCTGGCAACATGGATCCTGGCCTTTGTCT < 41bp 0.829029857050864 0.505154101587059 0.89511555 0.3281683 prediction 0.647751510927609 Functional Loss - TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176079787 chr5:176079789 nonsynonymous SNV 0.959 5 23 hm5C_associated_SNPs_51662 0 0 1 0 1 TSPAN17 chr5:176079744 3'AG 176079744 Downstream 46bp
chr5 158695986 158695986 1 + A C UCEC 158695982 + 158695962 158696002 41 GTATTCAGTGACCACACTTTCAGAAGATGATACTGTGCTCG GTATTCAGTGACCACACTTTCAGACGATGATACTGTGCTCG < 41bp 0.868961317022649 0.545107558499819 0.9105872 0.89829665 prediction 0.647707517045661 Functional Loss - UBLCP1 ENSG00000164332 CDS Human protein_coding chr5:158695982 chr5:158695986 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_51665 0 0 1 0 1 UBLCP1 chr5:158696077 5'GT 158696077 Upstream 92bp
chr22 18604249 18604249 1 + G T UCEC 18604246 + 18604226 18604266 41 TTGCTTCCCTCTCCCCACAGCGGGAATGCATATCAGTCCAC TTGCTTCCCTCTCCCCACAGCGGTAATGCATATCAGTCCAC < 41bp 0.872568594689787 0.548777438570295 0.90359247 0.48434028 prediction 0.647582312238983 Functional Loss - TUBA8 ENSG00000183785;ENSG00000215193 CDS Human other chr22:18604246 chr22:18604249 stopgain 0.973 1 24 hm5C_associated_SNPs_51668 0 0 0 0 1 TUBA8 chr22:18604246 3'AG 18604246 Downstream 4bp
chr11 125300009 125300009 1 + G T LUAD 125300007 + 125299987 125300027 41 CTGCGGGGGTGCTGCAGCAGCAGGGCGGTGCCCCAGGGACA CTGCGGGGGTGCTGCAGCAGCATGGCGGTGCCCCAGGGACA < 41bp 0.826599130584587 0.502837486846887 0.90928924 0.5331431 prediction 0.6475232874754 Functional Loss - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125300007 chr11:125300009 nonsynonymous SNV 0.621 2 23 hm5C_associated_SNPs_51669 0 0 0 0 1 PKNOX2 chr11:125300037 5'GT 125300037 Upstream 29bp
chr19 49674973 49674973 1 + G T UCEC 49674970 + 49674950 49674990 41 GAGCCAGGCAAGGCGAAGCCCGAGATCGAATCAGGCGTTTC GAGCCAGGCAAGGCGAAGCCCGATATCGAATCAGGCGTTTC < 41bp 0.823713939638853 0.461685887700571 0.36718696 0.14130145 prediction 0.647427879277706 Functional Loss - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49674970 chr19:49674973 nonsynonymous SNV 0.487 2 24 hm5C_associated_SNPs_51674 0 0 1 0 1 TRPM4 chr19:49675026 5'GT 49675026 Upstream 54bp
chr20 34526626 34526626 1 + G T LUAD 34526623 + 34526603 34526643 41 TTTGTCCTCTCAACAGAAGCCGGGAGCATCCTGATCTGCCG TTTGTCCTCTCAACAGAAGCCGGTAGCATCCTGATCTGCCG < 41bp 0.860002479884817 0.536291153071287 0.7523564 0.2604158 prediction 0.647422653627059 Functional Loss - PHF20 ENSG00000025293 CDS Human protein_coding chr20:34526623 chr20:34526626 stopgain 1.000 1 24 hm5C_associated_SNPs_51676 0 0 1 0 1 PHF20 chr20:34526619 3'AG 34526619 Downstream 8bp
chr1 161089103 161089103 1 + G T THCA 161089100 + 161089080 161089120 41 TGAGGCATTTGACTTCATTGCACGGGACCCTGCAGAGACGC TGAGGCATTTGACTTCATTGCACTGGACCCTGCAGAGACGC < 41bp 0.866258195310534 0.542575181768869 0.5043073 0.17659691 prediction 0.647366027083331 Functional Loss - NIT1 ENSG00000158793 CDS Human protein_coding chr1:161089100 chr1:161089103 nonsynonymous SNV 0.922 1 24 hm5C_associated_SNPs_51677 0 0 1 0 1 NIT1 chr1:161089178 5'GT 161089178 Upstream 76bp
chr7 100391524 100391524 1 + G T COAD 100391521 + 100391501 100391541 41 TGTGCCAACCTGGCAGACCCCGGGGACTGCGAGGGCCCCTG TGTGCCAACCTGGCAGACCCCGGTGACTGCGAGGGCCCCTG < 41bp 0.823681297106109 0.498225771022304 0.90492046 0.39564672 prediction 0.647362594212219 Functional Loss - ZAN ENSG00000146839 CDS Human protein_coding chr7:100391521 chr7:100391524 synonymous SNV 0.062 0 24 hm5C_associated_SNPs_51678 0 0 0 0 1 ZAN chr7:100391442 3'AG 100391442 Downstream 83bp
chr20 31829890 31829890 1 + G T UCEC 31829888 + 31829868 31829908 41 CCTCTGGTCAATGAGGTTCTCAGAGGCTTGGACATCACCCT CCTCTGGTCAATGAGGTTCTCATAGGCTTGGACATCACCCT < 41bp 0.828152041098858 0.50448966384293 0.94738996 0.91228986 prediction 0.647324754511857 Functional Loss - BPIFA1 ENSG00000198183 CDS Human protein_coding chr20:31829888 chr20:31829890 nonsynonymous SNV 0.626 1 23 hm5C_associated_SNPs_51682 0 0 0 0 2 BPIFA1 chr20:31829862 3'AG 31829862 Downstream 29bp
chr20 31829890 31829890 1 + G T UCEC 31829888 + 31829868 31829908 41 CCTCTGGTCAATGAGGTTCTCAGAGGCTTGGACATCACCCT CCTCTGGTCAATGAGGTTCTCATAGGCTTGGACATCACCCT < 41bp 0.828152041098858 0.50448966384293 0.94738996 0.91228986 prediction 0.647324754511857 Functional Loss - BPIFA1 ENSG00000198183 CDS Human protein_coding chr20:31829888 chr20:31829890 nonsynonymous SNV 0.626 1 23 hm5C_associated_SNPs_51682 0 0 0 0 2 BPIFA1 chr20:31829925 5'GT 31829925 Upstream 36bp
chr20 61458637 61458637 1 + G T SARC 61458634 + 61458614 61458654 41 CCAGAAGGGTTCCGCGGCCCCAAGGGTGACCTCGTAAGTGA CCAGAAGGGTTCCGCGGCCCCAATGGTGACCTCGTAAGTGA < 41bp 0.870047398257439 0.546390552097015 0.88845503 0.21715736 prediction 0.647313692320849 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61458634 chr20:61458637 nonsynonymous SNV 0.963 3 24 hm5C_associated_SNPs_51683 0 0 1 0 1 COL9A3 chr20:61458646 5'GT 61458646 Upstream 10bp
chr16 1291668 1291668 1 + G T LUSC 1291666 + 1291646 1291686 41 TTCCCCCCGGGGATGCCGTGCTGGGTCACTGGCTGGGGCGA TTCCCCCCGGGGATGCCGTGCTTGGTCACTGGCTGGGGCGA < 41bp 0.827980429602027 0.504327210440371 0.57095855 0.116600126 prediction 0.647306438323314 Functional Loss - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291666 chr16:1291668 nonsynonymous SNV 0.833 4 23 hm5C_associated_SNPs_51685 0 0 0 0 1 TPSAB1 chr16:1291700 5'GT 1291700 Upstream 33bp
chr16 2283161 2283161 1 + G T UCEC 2283158 + 2283138 2283178 41 TCCAGATGCAGGAGCTGTCCCTGGGCATGAAAGCCCTGGCC TCCAGATGCAGGAGCTGTCCCTGTGCATGAAAGCCCTGGCC < 41bp 0.869836622384515 0.546205727701411 0.79968846 0.17499706 prediction 0.647261789366207 Functional Loss - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2283158 chr16:2283161 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_51688 0 0 1 0 1 E4F1 chr16:2283184 5'GT 2283184 Upstream 24bp
chrX 71416699 71416699 1 + G T LUSC 71416696 + 71416676 71416716 41 AGCCATGGAAAAGTTAAAGTCTGGGATGAGATTCAATGAAG AGCCATGGAAAAGTTAAAGTCTGTGATGAGATTCAATGAAG < 41bp 0.853741893530977 0.530127117229846 0.45561457 0.16083759 prediction 0.647229552602262 Functional Loss - PIN4 ENSG00000102309 CDS Human protein_coding chrX:71416696 chrX:71416699 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51689 0 0 1 0 2 PIN4 chrX:71416635 3'AG 71416635 Downstream 65bp
chrX 71416699 71416699 1 + G T LUSC 71416696 + 71416676 71416716 41 AGCCATGGAAAAGTTAAAGTCTGGGATGAGATTCAATGAAG AGCCATGGAAAAGTTAAAGTCTGTGATGAGATTCAATGAAG < 41bp 0.853741893530977 0.530127117229846 0.45561457 0.16083759 prediction 0.647229552602262 Functional Loss - PIN4 ENSG00000102309 CDS Human protein_coding chrX:71416696 chrX:71416699 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51689 0 0 1 0 2 PIN4 chrX:71416754 5'GT 71416754 Upstream 56bp
chr18 905476 905476 1 + G T LUAD 905473 + 905453 905493 41 CTACAGCTCACCTGCCGCCGCCGGACTCCGGTTCCCCGGGA CTACAGCTCACCTGCCGCCGCCGTACTCCGGTTCCCCGGGA < 41bp 0.861617593347137 0.53800395068619 0.5307421 0.3275659 prediction 0.647227285321896 Functional Loss - ADCYAP1 ENSG00000141433 CDS Human processed_transcript chr18:905473 chr18:905476 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_51690 0 0 0 0 2 ADCYAP1 chr18:905387 3'AG 905387 Downstream 90bp
chr18 905476 905476 1 + G T LUAD 905473 + 905453 905493 41 CTACAGCTCACCTGCCGCCGCCGGACTCCGGTTCCCCGGGA CTACAGCTCACCTGCCGCCGCCGTACTCCGGTTCCCCGGGA < 41bp 0.861617593347137 0.53800395068619 0.5307421 0.3275659 prediction 0.647227285321896 Functional Loss - ADCYAP1 ENSG00000141433 CDS Human protein_coding chr18:905473 chr18:905476 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_51690 0 0 0 0 2 ADCYAP1 chr18:905497 5'GT 905497 Upstream 22bp
chr11 124743643 124743643 1 + G T LUSC 124743641 + 124743621 124743661 41 TACAGAACCCAGTTCCCCTCCGGGGGCTCCCTCTCAGCCAG TACAGAACCCAGTTCCCCTCCGTGGGCTCCCTCTCAGCCAG < 41bp 0.825974393986992 0.502367585751926 0.9421201 0.31482834 prediction 0.647213616470131 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124743641 chr11:124743643 nonsynonymous SNV 0.615 4 23 hm5C_associated_SNPs_51691 0 0 0 0 1 ROBO3 chr11:124743593 3'AG 124743593 Downstream 51bp
chr1 153233476 153233476 1 + G T TGCT 153233473 + 153233453 153233493 41 CCTCAGCCCCCAGTGGACTGCGTGAAGACCTCTGGCGGCGG CCTCAGCCCCCAGTGGACTGCGTTAAGACCTCTGGCGGCGG < 41bp 0.823604415575662 0.467141009070141 0.4158077 0.30460694 prediction 0.647208831151324 Functional Loss - LOR ENSG00000203782 CDS Human protein_coding chr1:153233473 chr1:153233476 synonymous SNV . 0 24 hm5C_associated_SNPs_51692 0 0 0 0 1 LOR chr1:153233403 3'AG 153233403 Downstream 74bp
chr16 67660532 67660532 1 + G T UCEC 67660529 + 67660509 67660549 41 GTTACTGTGATGCTGTGTTTCATGAGCGCTATGCCCTCATC GTTACTGTGATGCTGTGTTTCATTAGCGCTATGCCCTCATC < 41bp 0.82359953539561 0.467915450339648 0.4151138 0.12995878 prediction 0.647199070791219 Functional Loss - CTCF ENSG00000102974 CDS Human protein_coding chr16:67660529 chr16:67660532 stopgain 1.000 1 24 hm5C_associated_SNPs_51693 0 0 1 0 2 CTCF chr16:67660458 3'AG 67660458 Downstream 75bp
chr16 67660532 67660532 1 + G T UCEC 67660529 + 67660509 67660549 41 GTTACTGTGATGCTGTGTTTCATGAGCGCTATGCCCTCATC GTTACTGTGATGCTGTGTTTCATTAGCGCTATGCCCTCATC < 41bp 0.82359953539561 0.467915450339648 0.4151138 0.12995878 prediction 0.647199070791219 Functional Loss - CTCF ENSG00000102974 CDS Human protein_coding chr16:67660529 chr16:67660532 stopgain 1.000 1 24 hm5C_associated_SNPs_51693 0 0 1 0 2 CTCF chr16:67660618 5'GT 67660618 Upstream 87bp
chr5 21459682 21459682 1 + G T LUAD 21459679 + 21459659 21459699 41 GCGGCCAGCCATGGAGCGCTCTGGGCCCAGCGAAGGTGGGT GCGGCCAGCCATGGAGCGCTCTGTGCCCAGCGAAGGTGGGT < 41bp 0.843941956896718 0.520367789861635 0.49590918 0.1081776 prediction 0.647148334070166 Functional Loss - GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21459679 chr5:21459682 . . 0 24 hm5C_associated_SNPs_51694 0 0 1 0 1 GUSBP1 chr5:21459693 5'GT 21459693 Upstream 12bp
chr3 129238491 129238491 1 + G T PAAD 129238488 + 129238468 129238508 41 AGCCGCCGGGATGTCCTCATCAAGCGATGGCCCCCACCCCT AGCCGCCGGGATGTCCTCATCAATCGATGGCCCCCACCCCT < 41bp 0.823570284861839 0.483117462249367 0.90156746 0.3473337 prediction 0.647140569723678 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129238488 chr3:129238491 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51697 0 0 1 0 2 IFT122 chr3:129238411 3'AG 129238411 Downstream 81bp
chr3 129238491 129238491 1 + G T PAAD 129238488 + 129238468 129238508 41 AGCCGCCGGGATGTCCTCATCAAGCGATGGCCCCCACCCCT AGCCGCCGGGATGTCCTCATCAATCGATGGCCCCCACCCCT < 41bp 0.823570284861839 0.483117462249367 0.90156746 0.3473337 prediction 0.647140569723678 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129238488 chr3:129238491 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51697 0 0 1 0 2 IFT122 chr3:129238575 5'GT 129238575 Upstream 85bp
chr2 234243679 234243679 1 + A C UCEC 234243675 + 234243655 234243695 41 TGCCCTTGCTGGCTAACAATCGAGAAAGGAGAGGCATTGCC TGCCCTTGCTGGCTAACAATCGAGCAAGGAGAGGCATTGCC < 41bp 0.890977344414213 0.56742353335423 0.9209659 0.89205 prediction 0.647107622119966 Functional Loss - SAG ENSG00000130561 CDS Human protein_coding chr2:234243675 chr2:234243679 nonsynonymous SNV 0.991 2 25 hm5C_associated_SNPs_51698 0 0 0 0 2 SAG chr2:234243608 3'AG 234243608 Downstream 72bp
chr2 234243679 234243679 1 + A C UCEC 234243675 + 234243655 234243695 41 TGCCCTTGCTGGCTAACAATCGAGAAAGGAGAGGCATTGCC TGCCCTTGCTGGCTAACAATCGAGCAAGGAGAGGCATTGCC < 41bp 0.890977344414213 0.56742353335423 0.9209659 0.89205 prediction 0.647107622119966 Functional Loss - SAG ENSG00000130561 CDS Human protein_coding chr2:234243675 chr2:234243679 nonsynonymous SNV 0.991 2 25 hm5C_associated_SNPs_51698 0 0 0 0 2 SAG chr2:234243745 5'GT 234243745 Upstream 67bp
chrX 48681420 48681420 1 + G T UCEC 48681417 + 48681397 48681437 41 TAGCTGAGCGGATGACCACACGAGAAAAGAAGGTTCTGGAA TAGCTGAGCGGATGACCACACGATAAAAGAAGGTTCTGGAA < 41bp 0.82352496902166 0.490346277140456 0.7867712 0.7460826 prediction 0.647049938043319 Functional Loss - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48681417 chrX:48681420 stopgain 0.032 0 24 hm5C_associated_SNPs_51699 0 0 1 0 1 HDAC6 chrX:48681322 3'AG 48681322 Downstream 99bp
chr3 14801437 14801437 1 + G T LUSC 14801434 + 14801414 14801454 41 ACCGCCTGCTGCAGTATGACCTGGACAGCCCCCTGCAGGAG ACCGCCTGCTGCAGTATGACCTGTACAGCCCCCTGCAGGAG < 41bp 0.8711199424235 0.547658057836214 0.4191459 0.15130073 prediction 0.64692376917457 Functional Loss - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14801434 chr3:14801437 nonsynonymous SNV 0.853 3 24 hm5C_associated_SNPs_51703 0 0 0 0 2 C3orf20 chr3:14801398 3'AG 14801398 Downstream 40bp
chr3 14801437 14801437 1 + G T LUSC 14801434 + 14801414 14801454 41 ACCGCCTGCTGCAGTATGACCTGGACAGCCCCCTGCAGGAG ACCGCCTGCTGCAGTATGACCTGTACAGCCCCCTGCAGGAG < 41bp 0.8711199424235 0.547658057836214 0.4191459 0.15130073 prediction 0.64692376917457 Functional Loss - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14801434 chr3:14801437 nonsynonymous SNV 0.853 3 24 hm5C_associated_SNPs_51703 0 0 0 0 2 C3orf20 chr3:14801505 5'GT 14801505 Upstream 69bp
chr17 4644968 4644968 1 + G T COAD 4644966 + 4644946 4644986 41 ATCTGCTAGTGGATGGAGCCCAGGGAACCGCAAGCTGGGGC ATCTGCTAGTGGATGGAGCCCATGGAACCGCAAGCTGGGGC < 41bp 0.827276213455767 0.503815791928157 0.8941803 0.5909366 prediction 0.646920843055221 Functional Loss - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4644966 chr17:4644968 nonsynonymous SNV 0.616 3 23 hm5C_associated_SNPs_51704 0 0 0 0 1 ZMYND15 chr17:4644877 3'AG 4644877 Downstream 92bp
chr16 55525859 55525859 1 + G T LUAD 55525856 + 55525836 55525876 41 AGGATGACATCAAGGGCATTCAGGAGCTCTATGGTAAACCT AGGATGACATCAAGGGCATTCAGTAGCTCTATGGTAAACCT < 41bp 0.865506998059817 0.542055068314885 0.8965527 0.82615983 prediction 0.646903859489862 Functional Loss - MMP2 ENSG00000087245 CDS Human protein_coding chr16:55525856 chr16:55525859 stopgain 0.960 1 24 hm5C_associated_SNPs_51706 0 0 0 0 1 MMP2 chr16:55525868 5'GT 55525868 Upstream 10bp
chr1 114215971 114215971 1 + G T LUSC 114215968 + 114215948 114215988 41 TTGGTTGTTATCCAGTAGAGCTGGAGAGAGGCCCCCGGGGC TTGGTTGTTATCCAGTAGAGCTGTAGAGAGGCCCCCGGGGC < 41bp 0.852253247202434 0.528805946169171 0.6320525 0.43143708 prediction 0.646894602066525 Functional Loss - MAGI3 ENSG00000081026 CDS Human protein_coding chr1:114215968 chr1:114215971 stopgain 1.000 1 24 hm5C_associated_SNPs_51707 0 0 0 0 1 MAGI3 chr1:114215944 3'AG 114215944 Downstream 28bp
chr9 136509395 136509395 1 + G T COAD 136509392 + 136509372 136509412 41 CTTCGGGGGTCCAGGGTCCTCCAGATATCTCCGCCTGGAAG CTTCGGGGGTCCAGGGTCCTCCATATATCTCCGCCTGGAAG < 41bp 0.823438187012006 0.45400830718117 0.78494084 0.24609596 prediction 0.646876374024012 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136509392 chr9:136509395 nonsynonymous SNV 0.297 1 24 hm5C_associated_SNPs_51709 0 0 0 0 2 DBH chr9:136509340 3'AG 136509340 Downstream 56bp
chr9 136509395 136509395 1 + G T COAD 136509392 + 136509372 136509412 41 CTTCGGGGGTCCAGGGTCCTCCAGATATCTCCGCCTGGAAG CTTCGGGGGTCCAGGGTCCTCCATATATCTCCGCCTGGAAG < 41bp 0.823438187012006 0.45400830718117 0.78494084 0.24609596 prediction 0.646876374024012 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136509392 chr9:136509395 nonsynonymous SNV 0.297 1 24 hm5C_associated_SNPs_51709 0 0 0 0 2 DBH chr9:136509442 5'GT 136509442 Upstream 48bp
chr5 10461347 10461347 1 + G T LUAD 10461345 + 10461325 10461365 41 CGAGATCCTCACGGACGATCCGGAGGGCGGGCCCGCTCGCA CGAGATCCTCACGGACGATCCGTAGGGCGGGCCCGCTCGCA < 41bp 0.834208076392058 0.510772018204807 0.8938228 0.083224446 prediction 0.646872116374501 Functional Loss - ROPN1L ENSG00000145491 CDS Human protein_coding chr5:10461345 chr5:10461347 stopgain 0.296 1 23 hm5C_associated_SNPs_51710 0 0 0 0 1 ROPN1L chr5:10461296 3'AG 10461296 Downstream 52bp
chr16 67236569 67236569 1 + G T TGCT 67236566 + 67236546 67236586 41 GGGAGCAGCTGGCCCGCACTCTGGCCCTGAAGCCCACTTCC GGGAGCAGCTGGCCCGCACTCTGTCCCTGAAGCCCACTTCC < 41bp 0.875981712461834 0.552551263463015 0.9035505 0.49634385 prediction 0.646860897997638 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67236566 chr16:67236569 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_51711 0 0 1 0 1 ELMO3 chr16:67236530 3'AG 67236530 Downstream 40bp
chr4 649750 649750 1 + G T LUAD 649747 + 649727 649767 41 AGCACACCCTCAGCCGATCACTGGGCCCTGGCCAGCGGCCT AGCACACCCTCAGCCGATCACTGTGCCCTGGCCAGCGGCCT < 41bp 0.823420491198156 0.438700546777632 0.54574454 0.15876418 prediction 0.646840982396313 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:649747 chr4:649750 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51712 0 0 0 0 2 PDE6B chr4:649729 3'AG 649729 Downstream 22bp
chr4 649750 649750 1 + G T LUAD 649747 + 649727 649767 41 AGCACACCCTCAGCCGATCACTGGGCCCTGGCCAGCGGCCT AGCACACCCTCAGCCGATCACTGTGCCCTGGCCAGCGGCCT < 41bp 0.823420491198156 0.438700546777632 0.54574454 0.15876418 prediction 0.646840982396313 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:649747 chr4:649750 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51712 0 0 0 0 2 PDE6B chr4:649795 5'GT 649795 Upstream 46bp
chr2 3461464 3461464 1 + G T SARC 3461461 + 3461441 3461481 41 GCGTGACTCAGGAGGGCAGACAAGGTGGGTCGGCCGGACTT GCGTGACTCAGGAGGGCAGACAATGTGGGTCGGCCGGACTT < 41bp 0.865334720737429 0.541931426962254 0.90403646 0.7442198 prediction 0.646806587550351 Functional Loss - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3461461 chr2:3461464 nonsynonymous SNV 0.322 2 24 hm5C_associated_SNPs_51713 0 0 1 0 2 TRAPPC12 chr2:3461392 3'AG 3461392 Downstream 73bp
chr2 3461464 3461464 1 + G T SARC 3461461 + 3461441 3461481 41 GCGTGACTCAGGAGGGCAGACAAGGTGGGTCGGCCGGACTT GCGTGACTCAGGAGGGCAGACAATGTGGGTCGGCCGGACTT < 41bp 0.865334720737429 0.541931426962254 0.90403646 0.7442198 prediction 0.646806587550351 Functional Loss - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3461461 chr2:3461464 nonsynonymous SNV 0.322 2 24 hm5C_associated_SNPs_51713 0 0 1 0 2 TRAPPC12 chr2:3461464 5'GT 3461464 Upstream 1bp
chr2 233245364 233245364 1 + G T UCEC 233245361 + 233245341 233245381 41 GAGCCTGGAGACATGAAATACGAGATCCACCGAGACTCCAC GAGCCTGGAGACATGAAATACGATATCCACCGAGACTCCAC < 41bp 0.868398739795097 0.545016049682087 0.6334578 0.10388011 prediction 0.646765380226019 Functional Loss - ALPP ENSG00000163283 CDS Human protein_coding chr2:233245361 chr2:233245364 nonsynonymous SNV 0.051 1 24 hm5C_associated_SNPs_51715 0 0 0 0 1 ALPP chr2:233245333 3'AG 233245333 Downstream 32bp
chr15 66811350 66811350 1 + G T LUAD 66811347 + 66811327 66811367 41 ATCCTGAAGGTACTTGTTGGCTAGGAGCTGAGCTTATCACA ATCCTGAAGGTACTTGTTGGCTATGAGCTGAGCTTATCACA < 41bp 0.823359182829528 0.475675464620919 0.12825507 0.05813998 prediction 0.646718365659055 Functional Loss - ZWILCH ENSG00000174442 CDS Human protein_coding chr15:66811347 chr15:66811350 stopgain 0.994 1 24 hm5C_associated_SNPs_51717 0 0 1 0 1 ZWILCH chr15:66811416 5'GT 66811416 Upstream 67bp
chrX 55117043 55117043 1 + G T OV 55117040 + 55117020 55117060 41 ATCAAGCAGTGCCTGCTTTTCAAGGTGAAGGGAGAGTGGAA ATCAAGCAGTGCCTGCTTTTCAATGTGAAGGGAGAGTGGAA < 41bp 0.854323119503626 0.530968744088441 0.8781238 0.05152318 prediction 0.646708750830371 Functional Loss - PAGE2 ENSG00000234068 CDS Human protein_coding chrX:55117040 chrX:55117043 nonsynonymous SNV 0.016 3 24 hm5C_associated_SNPs_51718 0 0 0 0 1 PAGE2 chrX:55117043 5'GT 55117043 Upstream 1bp
chr5 138268365 138268365 1 + G T COAD 138268362 + 138268342 138268382 41 ATCTGCAGCAAGGTCAAGGCCGAGGTGCAGAATCTCGGCGG ATCTGCAGCAAGGTCAAGGCCGATGTGCAGAATCTCGGCGG < 41bp 0.866537807688653 0.543185765163128 0.83378553 0.24606201 prediction 0.64670408505105 Functional Loss - CTNNA1 ENSG00000044115 CDS Human protein_coding chr5:138268362 chr5:138268365 nonsynonymous SNV 0.910 1 24 hm5C_associated_SNPs_51720 0 0 1 0 2 CTNNA1 chr5:138268267 3'AG 138268267 Downstream 99bp
chr5 138268365 138268365 1 + G T COAD 138268362 + 138268342 138268382 41 ATCTGCAGCAAGGTCAAGGCCGAGGTGCAGAATCTCGGCGG ATCTGCAGCAAGGTCAAGGCCGATGTGCAGAATCTCGGCGG < 41bp 0.866537807688653 0.543185765163128 0.83378553 0.24606201 prediction 0.64670408505105 Functional Loss - CTNNA1 ENSG00000044115 CDS Human protein_coding chr5:138268362 chr5:138268365 nonsynonymous SNV 0.910 1 24 hm5C_associated_SNPs_51720 0 0 1 0 2 CTNNA1 chr5:138268401 5'GT 138268401 Upstream 37bp
chr3 28520395 28520395 1 + G T COAD 28520392 + 28520372 28520412 41 GATATTCTCATGAGCAAAGACTGGAAATGTGCTGCCTATCA GATATTCTCATGAGCAAAGACTGTAAATGTGCTGCCTATCA < 41bp 0.823321496709908 0.491794359606498 0.18028477 0.09325045 prediction 0.646642993419816 Functional Loss - ZCWPW2 ENSG00000206559 CDS Human protein_coding chr3:28520392 chr3:28520395 stopgain 0.997 0 24 hm5C_associated_SNPs_51722 0 0 0 0 2 ZCWPW2 chr3:28520305 3'AG 28520305 Downstream 91bp
chr3 28520395 28520395 1 + G T COAD 28520392 + 28520372 28520412 41 GATATTCTCATGAGCAAAGACTGGAAATGTGCTGCCTATCA GATATTCTCATGAGCAAAGACTGTAAATGTGCTGCCTATCA < 41bp 0.823321496709908 0.491794359606498 0.18028477 0.09325045 prediction 0.646642993419816 Functional Loss - ZCWPW2 ENSG00000206559 CDS Human protein_coding chr3:28520392 chr3:28520395 stopgain 0.997 0 24 hm5C_associated_SNPs_51722 0 0 0 0 2 ZCWPW2 chr3:28520422 5'GT 28520422 Upstream 28bp
chr1 65247170 65247170 1 + G T UCEC 65247167 + 65247147 65247187 41 GCAGCAGACGGTATGACCATCAAGGGCAGCAAAGTCCAGGT GCAGCAGACGGTATGACCATCAATGGCAGCAAAGTCCAGGT < 41bp 0.873507644329338 0.55022915881247 0.7703669 0.29168674 prediction 0.646556971033736 Functional Loss - RAVER2 ENSG00000162437 CDS Human protein_coding chr1:65247167 chr1:65247170 nonsynonymous SNV 0.117 0 24 hm5C_associated_SNPs_51725 0 0 0 0 1 RAVER2 chr1:65247254 5'GT 65247254 Upstream 85bp
chrX 64957192 64957192 1 + G T UCEC 64957189 + 64957169 64957209 41 CCCGGGACCAGAAAAAGACTCAGGAACAGCTGGTAAAGCTG CCCGGGACCAGAAAAAGACTCAGTAACAGCTGGTAAAGCTG < 41bp 0.870463356842852 0.547186725309042 0.8498598 0.2564631 prediction 0.646553263067619 Functional Loss - MSN ENSG00000147065 CDS Human protein_coding chrX:64957189 chrX:64957192 stopgain 1.000 1 24 hm5C_associated_SNPs_51726 0 0 1 0 1 MSN chrX:64957200 5'GT 64957200 Upstream 9bp
chr7 142962282 142962282 1 + G T UCEC 142962279 + 142962259 142962299 41 GGGTCATGATCCTGCCCCCGCCCGGGGGATCTACTGTCCTC GGGTCATGATCCTGCCCCCGCCCTGGGGATCTACTGTCCTC < 41bp 0.823251899184438 0.452609279979883 0.31247985 0.16836694 prediction 0.646503798368875 Functional Loss - GSTK1 ENSG00000197448 CDS Human protein_coding chr7:142962279 chr7:142962282 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_51728 0 0 1 0 1 GSTK1 chr7:142962185 3'AG 142962185 Downstream 98bp
chr1 44438134 44438134 1 + G T STAD 44438131 + 44438111 44438151 41 GGCAAGGGCTGGAGCCCCGCCTGGGTCAGACGCCAGTGACA GGCAAGGGCTGGAGCCCCGCCTGTGTCAGACGCCAGTGACA < 41bp 0.82318779115987 0.459599911082226 0.8255453 0.13896543 prediction 0.646375582319739 Functional Loss - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44438131 chr1:44438134 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51734 0 0 1 0 1 DPH2 chr1:44438087 3'AG 44438087 Downstream 48bp
chr15 27188537 27188537 1 + G T LUAD 27188534 + 27188514 27188554 41 TTTACCAAGAGAGGCTGGGCCTGGGATGGCAAAAAAGCCTT TTTACCAAGAGAGGCTGGGCCTGTGATGGCAAAAAAGCCTT < 41bp 0.823176927498861 0.462190607755835 0.33189404 0.226545 prediction 0.646353854997722 Functional Loss - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27188534 chr15:27188537 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_51735 0 0 0 0 1 GABRA5 chr15:27188573 5'GT 27188573 Upstream 37bp
chr1 111784000 111784000 1 + G T LUSC 111783997 + 111783977 111784017 41 TCACGCGGCTCCAGGATCAACAGGTTCCCTACGCAGTCAAG TCACGCGGCTCCAGGATCAACAGTTTCCCTACGCAGTCAAG < 41bp 0.823176364600873 0.450126882874292 0.75346637 0.25238717 prediction 0.646352729201746 Functional Loss - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111783997 chr1:111784000 nonsynonymous SNV 0.388 3 24 hm5C_associated_SNPs_51736 0 0 0 0 2 CHI3L2 chr1:111783949 3'AG 111783949 Downstream 52bp
chr1 111784000 111784000 1 + G T LUSC 111783997 + 111783977 111784017 41 TCACGCGGCTCCAGGATCAACAGGTTCCCTACGCAGTCAAG TCACGCGGCTCCAGGATCAACAGTTTCCCTACGCAGTCAAG < 41bp 0.823176364600873 0.450126882874292 0.75346637 0.25238717 prediction 0.646352729201746 Functional Loss - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111783997 chr1:111784000 nonsynonymous SNV 0.388 3 24 hm5C_associated_SNPs_51736 0 0 0 0 2 CHI3L2 chr1:111784065 5'GT 111784065 Upstream 66bp
chr7 75614270 75614270 1 + G T UCEC 75614267 + 75614247 75614287 41 AAGATGGCCTCCTCCTCCGGCGAGGGCAAGGTGCGCCCCCT AAGATGGCCTCCTCCTCCGGCGATGGCAAGGTGCGCCCCCT < 41bp 0.82313228516502 0.468709055419696 0.8419611 0.16760087 prediction 0.64626457033004 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75614267 chr7:75614270 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_51739 0 0 1 0 1 POR chr7:75614276 5'GT 75614276 Upstream 7bp
chr13 114193789 114193789 1 + G T THCA 114193786 + 114193766 114193806 41 CCACCTCCATCGAACCCATCCGCGACTTCCTGGCCATCGTT CCACCTCCATCGAACCCATCCGCTACTTCCTGGCCATCGTT < 41bp 0.864888627481009 0.54177895384054 0.23069331 0.09973556 prediction 0.646219347280938 Functional Loss - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114193786 chr13:114193789 nonsynonymous SNV 0.745 4 24 hm5C_associated_SNPs_51741 0 0 1 0 1 TMCO3 chr13:114193822 5'GT 114193822 Upstream 34bp
chr12 9994440 9994440 1 + G T UCEC 9994437 + 9994417 9994457 41 AATCAGAATGGCTCAAATACCAAGGGAAGTGTTGTTATTGG AATCAGAATGGCTCAAATACCAATGGAAGTGTTGTTATTGG < 41bp 0.82310795187012 0.488696232310549 0.92793065 0.4160998 prediction 0.646215903740239 Functional Loss - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9994437 chr12:9994440 nonsynonymous SNV 0.721 1 24 hm5C_associated_SNPs_51742 0 0 0 0 1 KLRF1 chr12:9994408 3'AG 9994408 Downstream 33bp
chr14 57075934 57075934 1 + G T UCEC 57075931 + 57075911 57075951 41 CTTAATCACGCCCGGTGGACCTGGGGAGACCAGACAACACT CTTAATCACGCCCGGTGGACCTGTGGAGACCAGACAACACT < 41bp 0.858106136730569 0.535018446035966 0.27942818 0.089048445 prediction 0.646175381389207 Functional Loss - TMEM260 ENSG00000070269 CDS Human protein_coding chr14:57075931 chr14:57075934 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51743 0 0 0 1 1 TMEM260 chr14:57076003 5'GT 57076003 Upstream 70bp
chr2 238730411 238730411 1 + G T UCEC 238730408 + 238730388 238730428 41 TTTCAGAAGCAGATGCTGAACAAGATAATCAGAGGGCTCAT TTTCAGAAGCAGATGCTGAACAATATAATCAGAGGGCTCAT < 41bp 0.823080485364996 0.488606320629379 0.6445014 0.08038476 prediction 0.646160970729992 Functional Loss - RBM44 ENSG00000177483 CDS Human protein_coding chr2:238730408 chr2:238730411 nonsynonymous SNV 0.019 2 24 hm5C_associated_SNPs_51744 0 0 0 0 2 RBM44 chr2:238730386 3'AG 238730386 Downstream 26bp
chr2 238730411 238730411 1 + G T UCEC 238730408 + 238730388 238730428 41 TTTCAGAAGCAGATGCTGAACAAGATAATCAGAGGGCTCAT TTTCAGAAGCAGATGCTGAACAATATAATCAGAGGGCTCAT < 41bp 0.823080485364996 0.488606320629379 0.6445014 0.08038476 prediction 0.646160970729992 Functional Loss - RBM44 ENSG00000177483 CDS Human protein_coding chr2:238730408 chr2:238730411 nonsynonymous SNV 0.019 2 24 hm5C_associated_SNPs_51744 0 0 0 0 2 RBM44 chr2:238730470 5'GT 238730470 Upstream 60bp
chr14 24026169 24026169 1 + G T LUAD 24026166 + 24026146 24026186 41 TGGATGGGAGCTCAAATGTCCTGGAGCAGCAGGTGTCTTAG TGGATGGGAGCTCAAATGTCCTGTAGCAGCAGGTGTCTTAG < 41bp 0.823078194843427 0.482225031615624 0.6525279 0.22422466 prediction 0.646156389686855 Functional Loss - THTPA ENSG00000259431 CDS Human protein_coding chr14:24026166 chr14:24026169 nonsynonymous SNV 0.974 3 24 hm5C_associated_SNPs_51746 0 0 1 0 2 THTPA chr14:24026243 5'GT 24026243 Upstream 75bp
chr14 24026169 24026169 1 + G T LUAD 24026166 + 24026146 24026186 41 TGGATGGGAGCTCAAATGTCCTGGAGCAGCAGGTGTCTTAG TGGATGGGAGCTCAAATGTCCTGTAGCAGCAGGTGTCTTAG < 41bp 0.823078194843427 0.482225031615624 0.6525279 0.22422466 prediction 0.646156389686855 Functional Loss - THTPA ENSG00000259431 CDS Human protein_coding chr14:24026166 chr14:24026169 nonsynonymous SNV 0.974 3 24 hm5C_associated_SNPs_51746 0 0 1 0 2 THTPA chr14:24026248 5'GT 24026248 Upstream 80bp
chr20 44640804 44640804 1 + G T LUAD 44640801 + 44640781 44640821 41 TCGACGGTGATGGGGGGCAACTCGGCGGGGGAGCTGTGCGT TCGACGGTGATGGGGGGCAACTCTGCGGGGGAGCTGTGCGT < 41bp 0.823041928096927 0.455238054350197 0.9094231 0.8436977 prediction 0.646083856193854 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44640801 chr20:44640804 synonymous SNV . 0 24 hm5C_associated_SNPs_51748 0 0 0 0 1 MMP9 chr20:44640776 3'AG 44640776 Downstream 29bp
chr13 51544119 51544119 1 + A C rs141473699 51544115 + 51544095 51544135 41 AAGTGATGGTGGTGGCTCCACGCAAGGCTTGGCGGTTTTCC AAGTGATGGTGGTGGCTCCACGCACGGCTTGGCGGTTTTCC < 41bp 0.822992798463677 0.465185506031122 0.10611752 0.042931914 prediction 0.645985596927354 Functional Loss - RNASEH2B ENSG00000136104 UTR3 Human protein_coding chr13:51544115 chr13:51544119 . . 0 25 hm5C_associated_SNPs_51751 0 0 0 0 1 RNASEH2B chr13:51544068 3'AG 51544068 Downstream 52bp
chrX 140985179 140985179 1 + G T UCEC 140985176 + 140985156 140985196 41 ATTGATGACCAGGGCATGCCCAAGAACTGTCTCCTGATTCT ATTGATGACCAGGGCATGCCCAATAACTGTCTCCTGATTCT < 41bp 0.870030026464803 0.547040609181675 0.24066305 0.04567629 prediction 0.645978834566255 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140985176 chrX:140985179 nonsynonymous SNV 0.000 3 24 hm5C_associated_SNPs_51752 0 0 0 0 1 MAGEC3 chrX:140985272 5'GT 140985272 Upstream 94bp
chr8 144822037 144822037 1 + G T rs7831467 144822035 + 144822015 144822055 41 TCGTTTTCCCTTAGGGAAGCCCGGGGAGAACCGCCCGCCGC TCGTTTTCCCTTAGGGAAGCCCTGGGAGAACCGCCCGCCGC < 41bp 0.822988814861402 0.499502305635892 0.89476824 0.16734022 prediction 0.645977629722805 Functional Loss - FAM83H-AS1 ENSG00000203499 ncRNA_exonic Human protein_coding chr8:144822035 chr8:144822037 . . 0 23 hm5C_associated_SNPs_51753 0 0 0 0 2 FAM83H-AS1 chr8:144822029 3'AG 144822029 Downstream 9bp
chr8 144822037 144822037 1 + G T rs7831467 144822035 + 144822015 144822055 41 TCGTTTTCCCTTAGGGAAGCCCGGGGAGAACCGCCCGCCGC TCGTTTTCCCTTAGGGAAGCCCTGGGAGAACCGCCCGCCGC < 41bp 0.822988814861402 0.499502305635892 0.89476824 0.16734022 prediction 0.645977629722805 Functional Loss - FAM83H-AS1 ENSG00000203499 ncRNA_exonic Human protein_coding chr8:144822035 chr8:144822037 . . 0 23 hm5C_associated_SNPs_51753 0 0 0 0 2 FAM83H-AS1 chr8:144822118 5'GT 144822118 Upstream 82bp
chr19 54656706 54656706 1 + G T UCEC 54656703 + 54656683 54656723 41 TTCTACCAGCGCCTGTCGACCGAGACACTCTTCTTCATCTT TTCTACCAGCGCCTGTCGACCGATACACTCTTCTTCATCTT < 41bp 0.822984086743465 0.46179836123683 0.45585433 0.25476468 prediction 0.645968173486931 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54656703 chr19:54656706 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_51754 0 0 1 0 2 CNOT3 chr19:54656608 3'AG 54656608 Downstream 99bp
chr19 54656706 54656706 1 + G T UCEC 54656703 + 54656683 54656723 41 TTCTACCAGCGCCTGTCGACCGAGACACTCTTCTTCATCTT TTCTACCAGCGCCTGTCGACCGATACACTCTTCTTCATCTT < 41bp 0.822984086743465 0.46179836123683 0.45585433 0.25476468 prediction 0.645968173486931 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54656703 chr19:54656706 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_51754 0 0 1 0 2 CNOT3 chr19:54656736 5'GT 54656736 Upstream 31bp
chr10 91065757 91065757 1 + A C KIRC 91065753 + 91065733 91065773 41 ATTCCTTGGAGAGCAGCCTACGGCAACTAAAATGCCATTTC ATTCCTTGGAGAGCAGCCTACGGCCACTAAAATGCCATTTC < 41bp 0.822927393484519 0.458198964137799 0.40353522 0.22270608 prediction 0.645854786969037 Functional Loss - IFIT2 ENSG00000119922 CDS Human protein_coding chr10:91065753 chr10:91065757 nonsynonymous SNV 0.360 1 25 hm5C_associated_SNPs_51760 0 0 0 0 1 IFIT2 chr10:91065719 3'AG 91065719 Downstream 39bp
chr16 30484205 30484205 1 + G T SARC 30484202 + 30484182 30484222 41 GATGGCCATGGCGCTGCTGTCTGGGTTCTTTTTCTTCGGTA GATGGCCATGGCGCTGCTGTCTGTGTTCTTTTTCTTCGGTA < 41bp 0.82291494773544 0.471555832981101 0.85625494 0.12168488 prediction 0.64582989547088 Functional Loss - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30484202 chr16:30484205 nonsynonymous SNV 0.005 2 24 hm5C_associated_SNPs_51761 0 0 0 0 1 ITGAL chr16:30484219 5'GT 30484219 Upstream 15bp
chr10 13687075 13687075 1 + G T rs567837967 13687072 + 13687052 13687092 41 TGTCCCTGCCGGGTCCCGGCCAGGTGTGTGTGTGCCCCAGC TGTCCCTGCCGGGTCCCGGCCAGTTGTGTGTGTGCCCCAGC < 41bp 0.850934189465878 0.528031920437346 0.91802865 0.31725594 prediction 0.645804538057065 Functional Loss - FRMD4A ENSG00000151474 UTR3 Human protein_coding chr10:13687072 chr10:13687075 . . 0 24 hm5C_associated_SNPs_51763 0 0 1 0 1 FRMD4A chr10:13687136 5'GT 13687136 Upstream 62bp
chr19 55044960 55044960 1 + A C UCEC 55044956 + 55044936 55044976 41 CTCCTTCTCTTCCAGGTGCTCAGGACAAGTTCTCCCTGTCA CTCCTTCTCTTCCAGGTGCTCAGGCCAAGTTCTCCCTGTCA < 41bp 0.851758148483419 0.528865867719524 0.91976607 0.9174277 prediction 0.64578456152779 Functional Loss - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55044956 chr19:55044960 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_51764 0 0 0 2 1 KIR3DX1 chr19:55044951 3'AG 55044951 Downstream 10bp
chrX 135570622 135570622 1 + A C UCEC 135570618 + 135570598 135570638 41 CTTGCAGAAGGATGGCTGTTCGGAAGAATTGGTTGTAAGGT CTTGCAGAAGGATGGCTGTTCGGACGAATTGGTTGTAAGGT < 41bp 0.822851454813529 0.459702441144823 0.91303277 0.8849845 prediction 0.645702909627058 Functional Loss - BRS3 ENSG00000102239 CDS Human protein_coding chrX:135570618 chrX:135570622 synonymous SNV . 0 25 hm5C_associated_SNPs_51767 0 0 0 0 1 BRS3 chrX:135570707 5'GT 135570707 Upstream 86bp
chr8 124157050 124157050 1 + G T LUSC 124157047 + 124157027 124157067 41 CTAGAAAGTGGTTTTTAAAGCAAGAGATAAATGCGGCTGTA CTAGAAAGTGGTTTTTAAAGCAATAGATAAATGCGGCTGTA < 41bp 0.840994603479547 0.518147501291045 0.91638726 0.8833938 prediction 0.645694204377005 Functional Loss - TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124157047 chr8:124157050 stopgain 0.148 0 24 hm5C_associated_SNPs_51768 0 0 1 0 2 TBC1D31 chr8:124156957 3'AG 124156957 Downstream 94bp
chr8 124157050 124157050 1 + G T LUSC 124157047 + 124157027 124157067 41 CTAGAAAGTGGTTTTTAAAGCAAGAGATAAATGCGGCTGTA CTAGAAAGTGGTTTTTAAAGCAATAGATAAATGCGGCTGTA < 41bp 0.840994603479547 0.518147501291045 0.91638726 0.8833938 prediction 0.645694204377005 Functional Loss - TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124157047 chr8:124157050 stopgain 0.148 0 24 hm5C_associated_SNPs_51768 0 0 1 0 2 TBC1D31 chr8:124157095 5'GT 124157095 Upstream 46bp
chr7 34009963 34009963 1 + G T COAD 34009960 + 34009940 34009980 41 GGAGGGCGTTGTCACAGAGTCTGGGGTGCGCTGTGTTGTTC GGAGGGCGTTGTCACAGAGTCTGTGGTGCGCTGTGTTGTTC < 41bp 0.864165455964138 0.541339713462549 0.8626972 0.16350761 prediction 0.645651485003178 Functional Loss - BMPER ENSG00000164619 CDS Human protein_coding chr7:34009960 chr7:34009963 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_51770 0 0 0 0 2 BMPER chr7:34009941 3'AG 34009941 Downstream 23bp
chr7 34009963 34009963 1 + G T COAD 34009960 + 34009940 34009980 41 GGAGGGCGTTGTCACAGAGTCTGGGGTGCGCTGTGTTGTTC GGAGGGCGTTGTCACAGAGTCTGTGGTGCGCTGTGTTGTTC < 41bp 0.864165455964138 0.541339713462549 0.8626972 0.16350761 prediction 0.645651485003178 Functional Loss - BMPER ENSG00000164619 CDS Human protein_coding chr7:34009960 chr7:34009963 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_51770 0 0 0 0 2 BMPER chr7:34010031 5'GT 34010031 Upstream 69bp
chr9 133543593 133543593 1 + G T UCEC 133543590 + 133543570 133543610 41 GCTACTTCATCGATGCCAGCCAGGAGGACCACCGGAGCTGG GCTACTTCATCGATGCCAGCCAGTAGGACCACCGGAGCTGG < 41bp 0.872626217598876 0.549812179052088 0.88215196 0.4121403 prediction 0.645628077093576 Functional Loss - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133543590 chr9:133543593 stopgain 0.998 1 24 hm5C_associated_SNPs_51771 0 0 0 0 1 PRDM12 chr9:133543545 3'AG 133543545 Downstream 49bp
chrX 77380864 77380864 1 + G T HNSC 77380861 + 77380841 77380881 41 ACTTGCTGTGCCAAATGGAACACGGAGGATAAAGTCAGCCA ACTTGCTGTGCCAAATGGAACACTGAGGATAAAGTCAGCCA < 41bp 0.822792142177447 0.464603891952401 0.29553515 0.07137725 prediction 0.645584284354895 Functional Loss - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77380861 chrX:77380864 synonymous SNV . 0 24 hm5C_associated_SNPs_51774 0 0 1 0 2 PGK1 chrX:77380824 3'AG 77380824 Downstream 41bp
chrX 77380864 77380864 1 + G T HNSC 77380861 + 77380841 77380881 41 ACTTGCTGTGCCAAATGGAACACGGAGGATAAAGTCAGCCA ACTTGCTGTGCCAAATGGAACACTGAGGATAAAGTCAGCCA < 41bp 0.822792142177447 0.464603891952401 0.29553515 0.07137725 prediction 0.645584284354895 Functional Loss - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77380861 chrX:77380864 synonymous SNV . 0 24 hm5C_associated_SNPs_51774 0 0 1 0 2 PGK1 chrX:77380922 5'GT 77380922 Upstream 59bp
chr2 128324281 128324281 1 + G T LUAD 128324278 + 128324258 128324298 41 AGGTGCTGCCGCTCTACACCCTGGAGCAGGTACAGCTCTAC AGGTGCTGCCGCTCTACACCCTGTAGCAGGTACAGCTCTAC < 41bp 0.822789845895382 0.47082446191333 0.43009207 0.14305326 prediction 0.645579691790763 Functional Loss - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128324278 chr2:128324281 stopgain 1.000 1 24 hm5C_associated_SNPs_51776 0 0 0 0 1 MYO7B chr2:128324218 3'AG 128324218 Downstream 64bp
chr2 220370084 220370084 1 + G T LUSC 220370081 + 220370061 220370101 41 CTGGAGTCAGATCAAGTCCGCAGGGTATGGAAGGCTGGGTC CTGGAGTCAGATCAAGTCCGCAGTGTATGGAAGGCTGGGTC < 41bp 0.822778142344607 0.451394752002576 0.9242448 0.8775179 prediction 0.645556284689214 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220370081 chr2:220370084 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_51777 0 0 1 1 1 GMPPA chr2:220370084 3'AG 220370084 Downstream 1bp
chr10 120882997 120882997 1 + G T ESCA 120882994 + 120882974 120883014 41 TCCCCAGGACTCTGCCTGCCCTGGTGTGGCACCGACAGGAC TCCCCAGGACTCTGCCTGCCCTGTTGTGGCACCGACAGGAC < 41bp 0.872546729884863 0.549807123305441 0.2524933 0.19164425 prediction 0.645479213158844 Functional Loss - FAM45A ENSG00000119979 CDS Human protein_coding chr10:120882994 chr10:120882997 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51778 0 0 0 0 2 FAM45A chr10:120882981 3'AG 120882981 Downstream 17bp
chr10 120882997 120882997 1 + G T ESCA 120882994 + 120882974 120883014 41 TCCCCAGGACTCTGCCTGCCCTGGTGTGGCACCGACAGGAC TCCCCAGGACTCTGCCTGCCCTGTTGTGGCACCGACAGGAC < 41bp 0.872546729884863 0.549807123305441 0.2524933 0.19164425 prediction 0.645479213158844 Functional Loss - FAM45A ENSG00000119979 CDS Human protein_coding chr10:120882994 chr10:120882997 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51778 0 0 0 0 2 FAM45A chr10:120883081 5'GT 120883081 Upstream 85bp
chr9 12698640 12698640 1 + G T UCEC 12698637 + 12698617 12698657 41 CCTTGGAAGATTATGATACCCTGGGAACACTTTGTAACAGT CCTTGGAAGATTATGATACCCTGTGAACACTTTGTAACAGT < 41bp 0.822702955237627 0.471678363229931 0.15462145 0.024274945 prediction 0.645405910475255 Functional Loss - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12698637 chr9:12698640 stopgain 1.000 1 24 hm5C_associated_SNPs_51781 0 0 0 0 1 TYRP1 chr9:12698655 5'GT 12698655 Upstream 16bp
chrX 47044477 47044477 1 + G T LUAD 47044474 + 47044454 47044494 41 ATTGCCAAGGACATGGAACGCTGGGCCCGCAGTCTCAACAA ATTGCCAAGGACATGGAACGCTGTGCCCGCAGTCTCAACAA < 41bp 0.876407024209168 0.55372114409468 0.4303107 0.20619193 prediction 0.645371760228975 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47044474 chrX:47044477 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51782 0 0 1 0 1 RBM10 chrX:47044454 3'AG 47044454 Downstream 24bp
chr19 49649227 49649227 1 + G T BLCA 49649224 + 49649204 49649244 41 CAGGAAACGTGTGGATGACACACGAGGAGATGGAGTCCCTT CAGGAAACGTGTGGATGACACACTAGGAGATGGAGTCCCTT < 41bp 0.822678366167165 0.462382335524037 0.08678964 0.06133914 prediction 0.645356732334331 Functional Loss - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49649224 chr19:49649227 stopgain 0.999 0 24 hm5C_associated_SNPs_51783 0 0 0 0 2 PPFIA3 chr19:49649200 3'AG 49649200 Downstream 28bp
chr19 49649227 49649227 1 + G T BLCA 49649224 + 49649204 49649244 41 CAGGAAACGTGTGGATGACACACGAGGAGATGGAGTCCCTT CAGGAAACGTGTGGATGACACACTAGGAGATGGAGTCCCTT < 41bp 0.822678366167165 0.462382335524037 0.08678964 0.06133914 prediction 0.645356732334331 Functional Loss - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49649224 chr19:49649227 stopgain 0.999 0 24 hm5C_associated_SNPs_51783 0 0 0 0 2 PPFIA3 chr19:49649262 5'GT 49649262 Upstream 36bp
chr10 70532808 70532808 1 + G T UCEC 70532805 + 70532785 70532825 41 AAACTGAAGAAGATAACAATCAAGATGAATATGACCCTATG AAACTGAAGAAGATAACAATCAATATGAATATGACCCTATG < 41bp 0.825286864127639 0.502611670238501 0.84394425 0.089312434 prediction 0.645350387778276 Functional Loss - CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70532805 chr10:70532808 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51784 0 0 1 0 2 CCAR1 chr10:70532745 3'AG 70532745 Downstream 64bp
chr10 70532808 70532808 1 + G T UCEC 70532805 + 70532785 70532825 41 AAACTGAAGAAGATAACAATCAAGATGAATATGACCCTATG AAACTGAAGAAGATAACAATCAATATGAATATGACCCTATG < 41bp 0.825286864127639 0.502611670238501 0.84394425 0.089312434 prediction 0.645350387778276 Functional Loss - CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70532805 chr10:70532808 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51784 0 0 1 0 2 CCAR1 chr10:70532856 5'GT 70532856 Upstream 49bp
chr17 34912947 34912947 1 + G T DLBC 34912944 + 34912924 34912964 41 GACATGGTATGCTTAAGCAACAGGATCTAAGTATTGCCATG GACATGGTATGCTTAAGCAACAGTATCTAAGTATTGCCATG < 41bp 0.857658797509523 0.534994001223528 0.17222002 0.046741575 prediction 0.645329592571991 Functional Loss - GGNBP2 ENSG00000005955 CDS Human other chr17:34912944 chr17:34912947 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_51786 0 0 1 0 1 GGNBP2 chr17:34912923 3'AG 34912923 Downstream 25bp
chr19 39123113 39123113 1 + G T SARC 39123110 + 39123090 39123130 41 GGACCTCTTGGAAGGTATAACTGGCTTTGAAGACTCTGTCC GGACCTCTTGGAAGGTATAACTGTCTTTGAAGACTCTGTCC < 41bp 0.822605682110908 0.456999941213456 0.32599008 0.12145713 prediction 0.645211364221816 Functional Loss - EIF3K ENSG00000178982 CDS Human protein_coding chr19:39123110 chr19:39123113 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51791 0 0 1 0 1 EIF3K chr19:39123070 3'AG 39123070 Downstream 44bp
chr17 60814634 60814634 1 - C A UCEC 60814637 - 60814617 60814657 41 CTAAGCTGAAGAGGCCAAATCAAGAGAGAAGAAACTTGGTC CTAAGCTGAAGAGGCCAAATCAATAGAGAAGAAACTTGGTC < 41bp 0.822594028015168 0.454929476406584 0.87491393 0.29605752 prediction 0.645188056030337 Functional Loss - MARCH10 ENSG00000173838 CDS Human protein_coding chr17:60814637 chr17:60814634 stopgain 0.101 0 24 hm5C_associated_SNPs_51793 0 0 0 0 1 MARCH10 chr17:60814693 3'AG 60814693 Downstream 60bp
chr1 32622963 32622963 1 + G T BLCA 32622960 + 32622940 32622980 41 GTTCTAGGAGAGTGTGATCACAAGAGAGATGGTGGAGATGC GTTCTAGGAGAGTGTGATCACAATAGAGATGGTGGAGATGC < 41bp 0.82259303910794 0.475919391344153 0.49064052 0.19582891 prediction 0.645186078215879 Functional Loss - KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32622960 chr1:32622963 nonsynonymous SNV 0.970 1 24 hm5C_associated_SNPs_51794 0 0 1 0 2 KPNA6 chr1:32622947 3'AG 32622947 Downstream 17bp
chr1 32622963 32622963 1 + G T BLCA 32622960 + 32622940 32622980 41 GTTCTAGGAGAGTGTGATCACAAGAGAGATGGTGGAGATGC GTTCTAGGAGAGTGTGATCACAATAGAGATGGTGGAGATGC < 41bp 0.82259303910794 0.475919391344153 0.49064052 0.19582891 prediction 0.645186078215879 Functional Loss - KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32622960 chr1:32622963 nonsynonymous SNV 0.970 1 24 hm5C_associated_SNPs_51794 0 0 1 0 2 KPNA6 chr1:32623046 5'GT 32623046 Upstream 84bp
chr18 29054280 29054280 1 + G T LUAD 29054277 + 29054257 29054297 41 TCCTCAGGGCAGTCTGGAACCATGAGAACAAGGCATTCCAC TCCTCAGGGCAGTCTGGAACCATTAGAACAAGGCATTCCAC < 41bp 0.822579107918047 0.468762593374208 0.46930254 0.21207193 prediction 0.645158215836094 Functional Loss - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29054277 chr18:29054280 nonsynonymous SNV 0.922 0 24 hm5C_associated_SNPs_51795 0 0 0 0 1 DSG3 chr18:29054367 5'GT 29054367 Upstream 88bp
chr7 6628287 6628287 1 + G T LUAD 6628284 + 6628264 6628304 41 TTCCACGGATTGTCTTCATGCTGGGCTTTGTCGTGGTTCTG TTCCACGGATTGTCTTCATGCTGTGCTTTGTCGTGGTTCTG < 41bp 0.822577392224543 0.458157346922564 0.40061787 0.11807546 prediction 0.645154784449085 Functional Loss - ZDHHC4 ENSG00000136247 CDS Human protein_coding chr7:6628284 chr7:6628287 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_51797 0 0 1 0 1 ZDHHC4 chr7:6628248 3'AG 6628248 Downstream 40bp
chr4 7055867 7055867 1 + G T UCEC 7055864 + 7055844 7055884 41 ATTACGTGAGCATGTACATCCACGGGAACCTGGGGAAGGCC ATTACGTGAGCATGTACATCCACTGGAACCTGGGGAAGGCC < 41bp 0.822549572777134 0.465700047401419 0.3549281 0.10151273 prediction 0.645099145554267 Functional Loss - TADA2B ENSG00000173011 CDS Human protein_coding chr4:7055864 chr4:7055867 nonsynonymous SNV 0.969 4 24 hm5C_associated_SNPs_51801 0 0 0 0 1 TADA2B chr4:7055789 3'AG 7055789 Downstream 79bp
chr3 195385028 195385028 1 + G T rs562577266 195385025 + 195385005 195385045 41 CTCGGCGCTTGGCGCTGGCGCTGGCCAAGGCGGTGAGTCCC CTCGGCGCTTGGCGCTGGCGCTGTCCAAGGCGGTGAGTCCC < 41bp 0.840121614293857 0.517572319390265 0.74106586 0.53798825 prediction 0.645098589807185 Functional Loss - SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195385025 chr3:195385028 . . 0 24 hm5C_associated_SNPs_51802 0 0 1 0 1 SDHAP2 chr3:195385036 5'GT 195385036 Upstream 9bp
chr9 114423979 114423979 1 + G T SARC 114423976 + 114423956 114423996 41 AGAGCAGCTCAAGTTGGAGGCTGGCGTGGAGAGGATCAAGG AGAGCAGCTCAAGTTGGAGGCTGTCGTGGAGAGGATCAAGG < 41bp 0.832279557436819 0.509746232405355 0.83312577 0.5800339 prediction 0.645066650062928 Functional Loss - GNG10 ENSG00000242616 CDS Human protein_coding chr9:114423976 chr9:114423979 nonsynonymous SNV 0.974 1 24 hm5C_associated_SNPs_51803 0 0 1 0 1 GNG10 chr9:114423995 5'GT 114423995 Upstream 17bp
chr9 78638728 78638728 1 + A C LGG 78638724 + 78638704 78638744 41 AGCCTGGAAGAGAGGCTACACGGGAAAGAACATTGTGGTCA AGCCTGGAAGAGAGGCTACACGGGCAAGAACATTGTGGTCA < 41bp 0.822477456682541 0.464670598232941 0.87135553 0.7077248 prediction 0.644954913365082 Functional Loss - PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78638724 chr9:78638728 synonymous SNV . 0 25 hm5C_associated_SNPs_51806 0 0 0 0 2 PCSK5 chr9:78638654 3'AG 78638654 Downstream 75bp
chr9 78638728 78638728 1 + A C LGG 78638724 + 78638704 78638744 41 AGCCTGGAAGAGAGGCTACACGGGAAAGAACATTGTGGTCA AGCCTGGAAGAGAGGCTACACGGGCAAGAACATTGTGGTCA < 41bp 0.822477456682541 0.464670598232941 0.87135553 0.7077248 prediction 0.644954913365082 Functional Loss - PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78638724 chr9:78638728 synonymous SNV . 0 25 hm5C_associated_SNPs_51806 0 0 0 0 2 PCSK5 chr9:78638797 5'GT 78638797 Upstream 70bp
chr7 35913313 35913313 1 + G T LUAD 35913310 + 35913290 35913330 41 GGACTACCTAAATGCAGAATCACGAGTGAACAGACGTCAGA GGACTACCTAAATGCAGAATCACTAGTGAACAGACGTCAGA < 41bp 0.82247349781637 0.477398272652571 0.22623426 0.019704312 prediction 0.64494699563274 Functional Loss - SEPT7 ENSG00000122545 CDS Human protein_coding chr7:35913310 chr7:35913313 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_51807 0 0 1 0 2 SEPT7 chr7:35913251 3'AG 35913251 Downstream 63bp
chr7 35913313 35913313 1 + G T LUAD 35913310 + 35913290 35913330 41 GGACTACCTAAATGCAGAATCACGAGTGAACAGACGTCAGA GGACTACCTAAATGCAGAATCACTAGTGAACAGACGTCAGA < 41bp 0.82247349781637 0.477398272652571 0.22623426 0.019704312 prediction 0.64494699563274 Functional Loss - SEPT7 ENSG00000122545 CDS Human protein_coding chr7:35913310 chr7:35913313 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_51807 0 0 1 0 2 SEPT7 chr7:35913385 5'GT 35913385 Upstream 73bp
chr4 81974563 81974563 1 + G T LUAD 81974560 + 81974540 81974580 41 GAGAGCTGTGGGGGTCGTTCCTGGGATTCCTGAGCCTTGCT GAGAGCTGTGGGGGTCGTTCCTGTGATTCCTGAGCCTTGCT < 41bp 0.822467271891647 0.477198840041313 0.8861636 0.2890204 prediction 0.644934543783293 Functional Loss - BMP3 ENSG00000152785 CDS Human protein_coding chr4:81974560 chr4:81974563 nonsynonymous SNV 0.856 4 24 hm5C_associated_SNPs_51809 0 0 0 0 1 BMP3 chr4:81974499 3'AG 81974499 Downstream 65bp
chr21 34805103 34805103 1 - C A BLCA 34805106 - 34805086 34805126 41 AGGCCTCTATATTTCAGGACCAGGAAGAAACAGGCTCCTGC AGGCCTCTATATTTCAGGACCAGTAAGAAACAGGCTCCTGC < 41bp 0.85782512757213 0.535389532287213 0.23814955 0.19175836 prediction 0.644871190569835 Functional Loss - IFNGR2 ENSG00000159128 CDS Human protein_coding chr21:34805106 chr21:34805103 nonsynonymous SNV 0.991 0 24 hm5C_associated_SNPs_51812 0 0 1 0 1 IFNGR2 chr21:34805109 3'AG 34805109 Downstream 7bp
chr1 25611101 25611101 1 + G T rs199509194 25611098 + 25611078 25611118 41 ACCGTGATGGCGGCCATTGGCTTGGGCTTCCTCACCTCGAG ACCGTGATGGCGGCCATTGGCTTTGGCTTCCTCACCTCGAG < 41bp 0.870975578905563 0.548561088634212 0.4601049 0.2123422 prediction 0.644828980542701 Functional Loss - RHD ENSG00000187010 CDS Human protein_coding chr1:25611098 chr1:25611101 nonsynonymous SNV 0.018 0 24 hm5C_associated_SNPs_51815 0 0 1 0 1 RHD chr1:25611064 3'AG 25611064 Downstream 38bp
chr12 6646827 6646827 1 + G T UCEC 6646824 + 6646804 6646844 41 AAACTGTGGCGTGATGGCCGCGGGGCTCTCCAGAACATCAT AAACTGTGGCGTGATGGCCGCGGTGCTCTCCAGAACATCAT < 41bp 0.873970282634355 0.551565229389308 0.8965599 0.22647324 prediction 0.644810106490095 Functional Loss - GAPDH ENSG00000111640 CDS Human protein_coding chr12:6646824 chr12:6646827 synonymous SNV . 0 24 hm5C_associated_SNPs_51816 0 0 1 0 1 GAPDH chr12:6646750 3'AG 6646750 Downstream 78bp
chr9 136302943 136302943 1 + G T LUSC 136302940 + 136302920 136302960 41 TGAAGCGTGGAGACAGCTTCCTCGATGGGACCCGGTGTATG TGAAGCGTGGAGACAGCTTCCTCTATGGGACCCGGTGTATG < 41bp 0.822403863789254 0.491161566147586 0.24951124 0.9285033 prediction 0.644807727578508 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136302940 chr9:136302943 nonsynonymous SNV 0.982 3 24 hm5C_associated_SNPs_51817 0 0 1 0 1 ADAMTS13 chr9:136302869 3'AG 136302869 Downstream 75bp
chr9 127119096 127119096 1 - C A UCEC 127119099 - 127119079 127119119 41 ATTGACCTCTGCGTCATCAGCAAGAACAAGCTGGATTTTCT ATTGACCTCTGCGTCATCAGCAATAACAAGCTGGATTTTCT < 41bp 0.86240358912429 0.540003117067601 0.29972395 0.11941865 prediction 0.644800944113379 Functional Loss - PSMB7 ENSG00000136930 CDS Human protein_coding chr9:127119099 chr9:127119096 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_51818 0 0 1 0 2 PSMB7 chr9:127119043 5'GT 127119043 Upstream 54bp
chr9 127119096 127119096 1 - C A UCEC 127119099 - 127119079 127119119 41 ATTGACCTCTGCGTCATCAGCAAGAACAAGCTGGATTTTCT ATTGACCTCTGCGTCATCAGCAATAACAAGCTGGATTTTCT < 41bp 0.86240358912429 0.540003117067601 0.29972395 0.11941865 prediction 0.644800944113379 Functional Loss - PSMB7 ENSG00000136930 CDS Human protein_coding chr9:127119099 chr9:127119096 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_51818 0 0 1 0 2 PSMB7 chr9:127119194 3'AG 127119194 Downstream 99bp
chr3 97510649 97510649 1 + G T LUSC 97510646 + 97510626 97510666 41 CCATAAAAGGAGAAGGCTTGCAAGAAGGTGTAGACTGGCTT CCATAAAAGGAGAAGGCTTGCAATAAGGTGTAGACTGGCTT < 41bp 0.82238041079167 0.489688978255404 0.21836159 0.11183542 prediction 0.644760821583341 Functional Loss - ARL6 ENSG00000113966 CDS Human protein_coding chr3:97510646 chr3:97510649 stopgain 0.999 1 24 hm5C_associated_SNPs_51819 0 0 1 0 2 ARL6 chr3:97510615 3'AG 97510615 Downstream 35bp
chr3 97510649 97510649 1 + G T LUSC 97510646 + 97510626 97510666 41 CCATAAAAGGAGAAGGCTTGCAAGAAGGTGTAGACTGGCTT CCATAAAAGGAGAAGGCTTGCAATAAGGTGTAGACTGGCTT < 41bp 0.82238041079167 0.489688978255404 0.21836159 0.11183542 prediction 0.644760821583341 Functional Loss - ARL6 ENSG00000113966 CDS Human protein_coding chr3:97510646 chr3:97510649 stopgain 0.999 1 24 hm5C_associated_SNPs_51819 0 0 1 0 2 ARL6 chr3:97510670 5'GT 97510670 Upstream 22bp
chr5 147480092 147480092 1 + G T COAD 147480089 + 147480069 147480109 41 CCAGAGAGAACGATCCTATCCAGGGCCCAGATGGGAAAGTG CCAGAGAGAACGATCCTATCCAGTGCCCAGATGGGAAAGTG < 41bp 0.871626388170147 0.549306902329458 0.87715787 0.27142736 prediction 0.644638971681377 Functional Loss - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147480089 chr5:147480092 nonsynonymous SNV 0.810 3 24 hm5C_associated_SNPs_51824 0 0 0 0 2 SPINK5 chr5:147480017 3'AG 147480017 Downstream 76bp
chr5 147480092 147480092 1 + G T COAD 147480089 + 147480069 147480109 41 CCAGAGAGAACGATCCTATCCAGGGCCCAGATGGGAAAGTG CCAGAGAGAACGATCCTATCCAGTGCCCAGATGGGAAAGTG < 41bp 0.871626388170147 0.549306902329458 0.87715787 0.27142736 prediction 0.644638971681377 Functional Loss - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147480089 chr5:147480092 nonsynonymous SNV 0.810 3 24 hm5C_associated_SNPs_51824 0 0 0 0 2 SPINK5 chr5:147480144 5'GT 147480144 Upstream 53bp
chrX 48434753 48434753 1 + G T CHOL 48434750 + 48434730 48434770 41 ATCATGCAGGCAAGTCTGCTCGGGGAACCAGAGGAGGTGGC ATCATGCAGGCAAGTCTGCTCGGTGAACCAGAGGAGGTGGC < 41bp 0.873942380592668 0.551631578103242 0.91138816 0.5283115 prediction 0.644621604978853 Functional Loss - RBM3 ENSG00000102317 CDS Human protein_coding chrX:48434750 chrX:48434753 stopgain 0.999 0 24 hm5C_associated_SNPs_51826 0 0 1 0 2 RBM3 chrX:48434702 3'AG 48434702 Downstream 52bp
chrX 48434753 48434753 1 + G T CHOL 48434750 + 48434730 48434770 41 ATCATGCAGGCAAGTCTGCTCGGGGAACCAGAGGAGGTGGC ATCATGCAGGCAAGTCTGCTCGGTGAACCAGAGGAGGTGGC < 41bp 0.873942380592668 0.551631578103242 0.91138816 0.5283115 prediction 0.644621604978853 Functional Loss - RBM3 ENSG00000102317 CDS Human protein_coding chrX:48434750 chrX:48434753 stopgain 0.999 0 24 hm5C_associated_SNPs_51826 0 0 1 0 2 RBM3 chrX:48434807 5'GT 48434807 Upstream 55bp
chrX 135586595 135586595 1 + G T UCEC 135586592 + 135586572 135586612 41 CATGAGCGAGTTGTCATCATCAAGAATATGTTTCATCCTAT CATGAGCGAGTTGTCATCATCAATAATATGTTTCATCCTAT < 41bp 0.869615897241819 0.547311125601406 0.41774523 0.122704774 prediction 0.644609543280825 Functional Loss - HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135586592 chrX:135586595 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51827 0 0 1 0 2 HTATSF1 chrX:135586523 3'AG 135586523 Downstream 73bp
chrX 135586595 135586595 1 + G T UCEC 135586592 + 135586572 135586612 41 CATGAGCGAGTTGTCATCATCAAGAATATGTTTCATCCTAT CATGAGCGAGTTGTCATCATCAATAATATGTTTCATCCTAT < 41bp 0.869615897241819 0.547311125601406 0.41774523 0.122704774 prediction 0.644609543280825 Functional Loss - HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135586592 chrX:135586595 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51827 0 0 1 0 2 HTATSF1 chrX:135586622 5'GT 135586622 Upstream 28bp
chr1 53072440 53072440 1 + G T UCEC 53072437 + 53072417 53072457 41 TGCAGCAGCTGCAGCGAGACCTGGGCCCCCACCACTTTAAC TGCAGCAGCTGCAGCGAGACCTGTGCCCCCACCACTTTAAC < 41bp 0.873808750090714 0.551539263204737 0.4129286 0.19607523 prediction 0.644538973771954 Functional Loss - GPX7 ENSG00000116157 CDS Human protein_coding chr1:53072437 chr1:53072440 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_51829 0 0 0 0 1 GPX7 chr1:53072356 3'AG 53072356 Downstream 85bp
chr11 44148449 44148449 1 + G T LUSC 44148446 + 44148426 44148466 41 GTGTTACAAGCTGGCTGTGTCCCGGTTGTCATTGCAGACTC GTGTTACAAGCTGGCTGTGTCCCTGTTGTCATTGCAGACTC < 41bp 0.822266635244737 0.46047383071829 0.1224111 0.050929844 prediction 0.644533270489474 Functional Loss - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44148446 chr11:44148449 synonymous SNV . 0 24 hm5C_associated_SNPs_51830 0 0 1 0 2 EXT2 chr11:44148366 3'AG 44148366 Downstream 84bp
chr11 44148449 44148449 1 + G T LUSC 44148446 + 44148426 44148466 41 GTGTTACAAGCTGGCTGTGTCCCGGTTGTCATTGCAGACTC GTGTTACAAGCTGGCTGTGTCCCTGTTGTCATTGCAGACTC < 41bp 0.822266635244737 0.46047383071829 0.1224111 0.050929844 prediction 0.644533270489474 Functional Loss - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44148446 chr11:44148449 synonymous SNV . 0 24 hm5C_associated_SNPs_51830 0 0 1 0 2 EXT2 chr11:44148505 5'GT 44148505 Upstream 57bp
chr17 48252649 48252649 1 + G T STAD 48252646 + 48252626 48252666 41 TGGTCCACCACTGCACCATCCACGGGAACACAGAGGAGCTG TGGTCCACCACTGCACCATCCACTGGAACACAGAGGAGCTG < 41bp 0.822264835375971 0.455695270224803 0.16877836 0.035786897 prediction 0.644529670751941 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48252646 chr17:48252649 nonsynonymous SNV 0.972 4 24 hm5C_associated_SNPs_51831 0 0 0 0 1 SGCA chr17:48252618 3'AG 48252618 Downstream 32bp
chr17 78169367 78169367 1 + G T LUAD 78169364 + 78169344 78169384 41 TTATGCTTTGCAGCAGCTGCCTGGAGATCCCGGAGGGAGAC TTATGCTTTGCAGCAGCTGCCTGTAGATCCCGGAGGGAGAC < 41bp 0.822260860953281 0.476398550930792 0.80135417 0.4245966 prediction 0.644521721906561 Functional Loss - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78169364 chr17:78169367 stopgain 0.006 0 24 hm5C_associated_SNPs_51832 0 0 0 0 2 CARD14 chr17:78169357 3'AG 78169357 Downstream 11bp
chr17 78169367 78169367 1 + G T LUAD 78169364 + 78169344 78169384 41 TTATGCTTTGCAGCAGCTGCCTGGAGATCCCGGAGGGAGAC TTATGCTTTGCAGCAGCTGCCTGTAGATCCCGGAGGGAGAC < 41bp 0.822260860953281 0.476398550930792 0.80135417 0.4245966 prediction 0.644521721906561 Functional Loss - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78169364 chr17:78169367 stopgain 0.006 0 24 hm5C_associated_SNPs_51832 0 0 0 0 2 CARD14 chr17:78169451 5'GT 78169451 Upstream 85bp
chr12 52282939 52282939 1 + A C STAD 52282935 + 52282915 52282955 41 CTTTCCTTGATGTGAACCAGCAGGACAAAGGAGGGGACACG CTTTCCTTGATGTGAACCAGCAGGCCAAAGGAGGGGACACG < 41bp 0.873326857988344 0.551075326963034 0.62909913 0.8822013 prediction 0.644503062050621 Functional Loss - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52282935 chr12:52282939 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_51833 0 0 0 1 3 ANKRD33 chr12:52282851 3'AG 52282851 Downstream 89bp
chr12 52282939 52282939 1 + A C STAD 52282935 + 52282915 52282955 41 CTTTCCTTGATGTGAACCAGCAGGACAAAGGAGGGGACACG CTTTCCTTGATGTGAACCAGCAGGCCAAAGGAGGGGACACG < 41bp 0.873326857988344 0.551075326963034 0.62909913 0.8822013 prediction 0.644503062050621 Functional Loss - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52282935 chr12:52282939 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_51833 0 0 0 1 3 ANKRD33 chr12:52282855 3'AG 52282855 Downstream 85bp
chr12 52282939 52282939 1 + A C STAD 52282935 + 52282915 52282955 41 CTTTCCTTGATGTGAACCAGCAGGACAAAGGAGGGGACACG CTTTCCTTGATGTGAACCAGCAGGCCAAAGGAGGGGACACG < 41bp 0.873326857988344 0.551075326963034 0.62909913 0.8822013 prediction 0.644503062050621 Functional Loss - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52282935 chr12:52282939 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_51833 0 0 0 1 3 ANKRD33 chr12:52282980 5'GT 52282980 Upstream 42bp
chr16 28905868 28905868 1 + G T SARC 28905865 + 28905845 28905885 41 GTCCGGCCAGGGCAGTATGACGGGCTGGTGGAGCTGGCCAC GTCCGGCCAGGGCAGTATGACGGTCTGGTGGAGCTGGCCAC < 41bp 0.822230762200081 0.439187007595323 0.86076784 0.30997348 prediction 0.644461524400162 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28905865 chr16:28905868 synonymous SNV . 0 24 hm5C_associated_SNPs_51835 0 0 0 0 2 ATP2A1 chr16:28905826 3'AG 28905826 Downstream 43bp
chr16 28905868 28905868 1 + G T SARC 28905865 + 28905845 28905885 41 GTCCGGCCAGGGCAGTATGACGGGCTGGTGGAGCTGGCCAC GTCCGGCCAGGGCAGTATGACGGTCTGGTGGAGCTGGCCAC < 41bp 0.822230762200081 0.439187007595323 0.86076784 0.30997348 prediction 0.644461524400162 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28905865 chr16:28905868 synonymous SNV . 0 24 hm5C_associated_SNPs_51835 0 0 0 0 2 ATP2A1 chr16:28905928 5'GT 28905928 Upstream 61bp
chr1 28858817 28858817 1 + A C rs74891018 28858813 + 28858793 28858833 41 GTCAGCAGGAGACAGTCACACAGCAGCCCTCACCGATGATG GTCAGCAGGAGACAGTCACACAGCCGCCCTCACCGATGATG < 41bp 0.891073998917884 0.568901314970295 0.41554272 0.58987105 prediction 0.644345367895179 Functional Loss - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28858813 chr1:28858817 synonymous SNV . 0 25 hm5C_associated_SNPs_51837 0 0 1 0 1 RCC1 chr1:28858862 5'GT 28858862 Upstream 46bp
chr1 116670202 116670202 1 + G T TGCT 116670199 + 116670179 116670219 41 GAGATCCCCACCACCTGGTCCAAGAAAGCCCGGTGGCCTCG GAGATCCCCACCACCTGGTCCAATAAAGCCCGGTGGCCTCG < 41bp 0.82215879977714 0.450213369305045 0.7504947 0.5089528 prediction 0.644317599554279 Functional Loss - MAB21L3 ENSG00000173212 CDS Human protein_coding chr1:116670199 chr1:116670202 nonsynonymous SNV 0.694 1 24 hm5C_associated_SNPs_51839 0 0 0 0 1 MAB21L3 chr1:116670265 5'GT 116670265 Upstream 64bp
chr2 238419407 238419407 1 + G T LUAD 238419404 + 238419384 238419424 41 GCCGCGTCCACCCGGAGGAGCAGGGCTGGATCTGTGACCCC GCCGCGTCCACCCGGAGGAGCAGTGCTGGATCTGTGACCCC < 41bp 0.883654950634998 0.561515032162911 0.91452014 0.6771603 prediction 0.644279836944174 Functional Loss - MLPH ENSG00000115648 CDS Human protein_coding chr2:238419404 chr2:238419407 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51840 0 0 0 0 1 MLPH chr2:238419438 5'GT 238419438 Upstream 32bp
chr9 136513045 136513045 1 + G T STAD 136513042 + 136513022 136513062 41 TCAACGCGGGGATCATGGAGCTGGGACTGGTGTACACGCCA TCAACGCGGGGATCATGGAGCTGTGACTGGTGTACACGCCA < 41bp 0.822109535024607 0.444621817594065 0.8083152 0.5823875 prediction 0.644219070049215 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136513042 chr9:136513045 stopgain 0.997 1 24 hm5C_associated_SNPs_51844 0 0 0 0 2 DBH chr9:136512968 3'AG 136512968 Downstream 78bp
chr9 136513045 136513045 1 + G T STAD 136513042 + 136513022 136513062 41 TCAACGCGGGGATCATGGAGCTGGGACTGGTGTACACGCCA TCAACGCGGGGATCATGGAGCTGTGACTGGTGTACACGCCA < 41bp 0.822109535024607 0.444621817594065 0.8083152 0.5823875 prediction 0.644219070049215 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136513042 chr9:136513045 stopgain 0.997 1 24 hm5C_associated_SNPs_51844 0 0 0 0 2 DBH chr9:136513134 5'GT 136513134 Upstream 90bp
chr14 56757108 56757108 1 + G T UCEC 56757105 + 56757085 56757125 41 TCCCAGCCCGGGGTCTGGCGCGAGATCTCTGTCTGTGGAGA TCCCAGCCCGGGGTCTGGCGCGATATCTCTGTCTGTGGAGA < 41bp 0.868744760489084 0.546638468985813 0.9176873 0.2116439 prediction 0.644212583006541 Functional Loss - PELI2 ENSG00000139946 CDS Human protein_coding chr14:56757105 chr14:56757108 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51845 0 0 0 0 1 PELI2 chr14:56757174 5'GT 56757174 Upstream 67bp
chr5 98109838 98109838 1 + A C rs2662263 98109834 + 98109814 98109854 41 GCCGCCGAGGTTGAGCAGCGCCGCAGCCCCGGGCTCTGCCC GCCGCCGAGGTTGAGCAGCGCCGCCGCCCCGGGCTCTGCCC < 41bp 0.872552573855636 0.550491870151809 0.6646217 0.7978416 prediction 0.644121407407653 Functional Loss - RGMB ENSG00000174136 CDS Human protein_coding chr5:98109834 chr5:98109838 nonsynonymous SNV 0.621 1 25 hm5C_associated_SNPs_51848 0 0 1 0 1 RGMB chr5:98109910 5'GT 98109910 Upstream 73bp
chr22 39418966 39418966 1 + G T LGG 39418964 + 39418944 39418984 41 CTCAAATCTCCTTTGGGACACAGGGGTCTTTCGAGGCCCGG CTCAAATCTCCTTTGGGACACATGGGTCTTTCGAGGCCCGG < 41bp 0.832046023935735 0.509993985134446 0.88823986 0.29664546 prediction 0.644104077602577 Functional Loss - APOBEC3D ENSG00000243811 CDS Human protein_coding chr22:39418964 chr22:39418966 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_51851 0 0 0 0 1 APOBEC3D chr22:39419019 5'GT 39419019 Upstream 54bp
chr2 162251702 162251702 1 + G T UCEC 162251699 + 162251679 162251719 41 AAAGAGATGTTGGAATTAGCCAAGAATTACAATAAGGTAAA AAAGAGATGTTGGAATTAGCCAATAATTACAATAAGGTAAA < 41bp 0.822048591652778 0.497026846376799 0.3134998 0.21044716 prediction 0.644097183305557 Functional Loss - PSMD14 ENSG00000115233 CDS Human protein_coding chr2:162251699 chr2:162251702 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51852 0 0 1 0 1 PSMD14 chr2:162251714 5'GT 162251714 Upstream 13bp
chr3 183994779 183994779 1 + G T UCEC 183994776 + 183994756 183994796 41 TACTGCTGGCTGCACTGCTTCTGGGCTGCCTTGTGGCCCTA TACTGCTGGCTGCACTGCTTCTGTGCTGCCTTGTGGCCCTA < 41bp 0.82203986154107 0.458266558125199 0.88606197 0.1895149 prediction 0.644079723082139 Functional Loss - ECE2 ENSG00000145194 CDS Human protein_coding chr3:183994776 chr3:183994779 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_51853 0 0 0 0 1 ECE2 chr3:183994815 5'GT 183994815 Upstream 37bp
chr1 170129736 170129736 1 + G T UCEC 170129733 + 170129713 170129753 41 CCAGAGCTAAACTTTTCTACCAAGAAGTACCAGCCACAGAA CCAGAGCTAAACTTTTCTACCAATAAGTACCAGCCACAGAA < 41bp 0.822032799774423 0.465921387849674 0.34618396 0.02137959 prediction 0.644065599548846 Functional Loss - METTL11B ENSG00000203740 CDS Human protein_coding chr1:170129733 chr1:170129736 stopgain 0.985 0 24 hm5C_associated_SNPs_51854 0 0 0 0 2 METTL11B chr1:170129659 3'AG 170129659 Downstream 78bp
chr1 170129736 170129736 1 + G T UCEC 170129733 + 170129713 170129753 41 CCAGAGCTAAACTTTTCTACCAAGAAGTACCAGCCACAGAA CCAGAGCTAAACTTTTCTACCAATAAGTACCAGCCACAGAA < 41bp 0.822032799774423 0.465921387849674 0.34618396 0.02137959 prediction 0.644065599548846 Functional Loss - METTL11B ENSG00000203740 CDS Human protein_coding chr1:170129733 chr1:170129736 stopgain 0.985 0 24 hm5C_associated_SNPs_51854 0 0 0 0 2 METTL11B chr1:170129834 5'GT 170129834 Upstream 99bp
chr17 73738716 73738716 1 + G T LUAD 73738713 + 73738693 73738733 41 GCGTGGAGCTGGTGGACGTACGGGTGCCCCTCTTTATCCGG GCGTGGAGCTGGTGGACGTACGGTTGCCCCTCTTTATCCGG < 41bp 0.822029172064199 0.458440079944531 0.4124465 0.09655601 prediction 0.644058344128397 Functional Loss - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73738713 chr17:73738716 nonsynonymous SNV 0.954 4 24 hm5C_associated_SNPs_51855 0 0 0 0 1 ITGB4 chr17:73738663 3'AG 73738663 Downstream 54bp
chr10 82403771 82403771 1 + G T GBM 82403768 + 82403748 82403788 41 GGAGGAAATTATCACTGTTTCAGGAGGAGAGTTACTTCAGG GGAGGAAATTATCACTGTTTCAGTAGGAGAGTTACTTCAGG < 41bp 0.856100864997767 0.534108905483287 0.91208506 0.40345824 prediction 0.643983919028959 Functional Loss - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82403768 chr10:82403771 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_51858 0 0 0 0 1 SH2D4B chr10:82403749 3'AG 82403749 Downstream 23bp
chr1 215768773 215768773 1 + G T COAD 215768770 + 215768750 215768790 41 GTTGGTGGCCACGAGTCATACAGGGAAAGTGGGAGTGTGGA GTTGGTGGCCACGAGTCATACAGTGAAAGTGGGAGTGTGGA < 41bp 0.862338846246502 0.540359262424475 0.86930466 0.12794659 prediction 0.643959167644053 Functional Loss - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215768770 chr1:215768773 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51860 0 0 1 0 2 KCTD3 chr1:215768698 3'AG 215768698 Downstream 76bp
chr1 215768773 215768773 1 + G T COAD 215768770 + 215768750 215768790 41 GTTGGTGGCCACGAGTCATACAGGGAAAGTGGGAGTGTGGA GTTGGTGGCCACGAGTCATACAGTGAAAGTGGGAGTGTGGA < 41bp 0.862338846246502 0.540359262424475 0.86930466 0.12794659 prediction 0.643959167644053 Functional Loss - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215768770 chr1:215768773 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51860 0 0 1 0 2 KCTD3 chr1:215768813 5'GT 215768813 Upstream 41bp
chr12 4705384 4705384 1 + G T LUAD 4705381 + 4705361 4705401 41 TCGGGAAGGGGTCCTTTGGACAGGTGGCCAAGTGCTTGGAT TCGGGAAGGGGTCCTTTGGACAGTTGGCCAAGTGCTTGGAT < 41bp 0.821920043969144 0.465813484509621 0.86113524 0.17631114 prediction 0.643840087938288 Functional Loss - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4705381 chr12:4705384 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51864 0 0 0 0 2 DYRK4 chr12:4705315 3'AG 4705315 Downstream 70bp
chr12 4705384 4705384 1 + G T LUAD 4705381 + 4705361 4705401 41 TCGGGAAGGGGTCCTTTGGACAGGTGGCCAAGTGCTTGGAT TCGGGAAGGGGTCCTTTGGACAGTTGGCCAAGTGCTTGGAT < 41bp 0.821920043969144 0.465813484509621 0.86113524 0.17631114 prediction 0.643840087938288 Functional Loss - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4705381 chr12:4705384 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51864 0 0 0 0 2 DYRK4 chr12:4705451 5'GT 4705451 Upstream 68bp
chr10 70097735 70097735 1 + A C STAD 70097731 + 70097711 70097751 41 CAGAAAATGCTCTGGGGAAACACAAGGAAAGAATAGGGCAC CAGAAAATGCTCTGGGGAAACACACGGAAAGAATAGGGCAC < 41bp 0.822651825750307 0.50078587906081 0.4691269 0.21000966 prediction 0.643731893378994 Functional Loss - HNRNPH3 ENSG00000096746 CDS Human protein_coding chr10:70097731 chr10:70097735 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_51866 0 0 1 0 1 HNRNPH3 chr10:70097753 5'GT 70097753 Upstream 19bp
chr11 552671 552671 1 + G T UCEC 552668 + 552648 552688 41 CAAGTGCACCAGGCAGAGCCCAAGACTCCCTCCAGCCCCCC CAAGTGCACCAGGCAGAGCCCAATACTCCCTCCAGCCCCCC < 41bp 0.821865909052293 0.458890193987108 0.25329268 0.09053883 prediction 0.643731818104586 Functional Loss - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:552668 chr11:552671 nonsynonymous SNV 0.271 0 24 hm5C_associated_SNPs_51867 0 0 0 0 1 LRRC56 chr11:552702 5'GT 552702 Upstream 32bp
chr15 89719209 89719209 1 + G T UCEC 89719207 + 89719187 89719227 41 TGTGCTGCGTCAGCGTGTGCCAGGGGTACAGTGCACTGAGG TGTGCTGCGTCAGCGTGTGCCATGGGTACAGTGCACTGAGG < 41bp 0.83519372405506 0.513332199746824 0.9300581 0.33680376 prediction 0.643723048616473 Functional Loss - ABHD2 ENSG00000140526 CDS Human protein_coding chr15:89719207 chr15:89719209 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_51868 0 0 1 0 1 ABHD2 chr15:89719226 5'GT 89719226 Upstream 18bp
chr16 88037961 88037961 1 + G T UCEC 88037958 + 88037938 88037978 41 CGGCAGAACGCCATTGTAGCCAAGATGGAAGACCCCTTGAG CGGCAGAACGCCATTGTAGCCAATATGGAAGACCCCTTGAG < 41bp 0.821842038086812 0.46913379375346 0.9043629 0.3518043 prediction 0.643684076173625 Functional Loss - BANP ENSG00000172530 CDS Human protein_coding chr16:88037958 chr16:88037961 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51869 0 0 1 0 1 BANP chr16:88038017 5'GT 88038017 Upstream 57bp
chr2 135012198 135012198 1 + G T LUSC 135012195 + 135012175 135012215 41 TGTGGTGGATGGGCCATACGCTGGAGTCATGACAGCTTATG TGTGGTGGATGGGCCATACGCTGTAGTCATGACAGCTTATG < 41bp 0.853970444806404 0.532147509216698 0.5209425 0.10946563 prediction 0.643645871179412 Functional Loss - MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135012195 chr2:135012198 nonsynonymous SNV 0.991 3 24 hm5C_associated_SNPs_51872 0 0 1 0 1 MGAT5 chr2:135012215 5'GT 135012215 Upstream 18bp
chr12 21349891 21349891 1 + A C SKCM 21349887 + 21349867 21349907 41 TTATTTATTCTAGGCACTATCAGGATAACTCCTACTGATTC TTATTTATTCTAGGCACTATCAGGCTAACTCCTACTGATTC < 41bp 0.857428021656314 0.535636451096328 0.9438978 0.9391136 prediction 0.643583141119972 Functional Loss - SLCO1B1 ENSG00000134538 CDS Human protein_coding chr12:21349887 chr12:21349891 nonsynonymous SNV 0.632 3 25 hm5C_associated_SNPs_51875 0 0 0 0 1 SLCO1B1 chr12:21349880 3'AG 21349880 Downstream 12bp
chr16 10851764 10851764 1 + G T THCA 10851761 + 10851741 10851781 41 CAGTTCCTCCGAGATGTGGACTGGGGAGAGGTCGACTACCT CAGTTCCTCCGAGATGTGGACTGTGGAGAGGTCGACTACCT < 41bp 0.821779771930008 0.447987603857784 0.28860998 0.07173237 prediction 0.643559543860015 Functional Loss - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10851761 chr16:10851764 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_51877 0 0 0 0 1 NUBP1 chr16:10851730 3'AG 10851730 Downstream 35bp
chr19 50949242 50949242 1 + G T UCEC 50949240 + 50949220 50949260 41 TCATCTTCTCAGACGTGGTCCAGGAGGACAGGGGTCGCTAT TCATCTTCTCAGACGTGGTCCATGAGGACAGGGGTCGCTAT < 41bp 0.822688029817605 0.500928971666132 0.8619663 0.1576351 prediction 0.643518116302946 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50949240 chr19:50949242 nonsynonymous SNV 0.101 0 23 hm5C_associated_SNPs_51879 0 0 0 0 1 MYBPC2 chr19:50949309 5'GT 50949309 Upstream 68bp
chr8 79588065 79588065 1 + G T UCEC 79588062 + 79588042 79588082 41 GTTGGAGAATTGTTACCTTGCAAGATTTGTGGAAGAACATT GTTGGAGAATTGTTACCTTGCAATATTTGTGGAAGAACATT < 41bp 0.837212578775085 0.515463178500614 0.38648352 0.12529415 prediction 0.643498800548943 Functional Loss - ZC2HC1A ENSG00000104427 CDS Human protein_coding chr8:79588062 chr8:79588065 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51880 0 0 0 0 2 ZC2HC1A chr8:79588022 3'AG 79588022 Downstream 44bp
chr8 79588065 79588065 1 + G T UCEC 79588062 + 79588042 79588082 41 GTTGGAGAATTGTTACCTTGCAAGATTTGTGGAAGAACATT GTTGGAGAATTGTTACCTTGCAATATTTGTGGAAGAACATT < 41bp 0.837212578775085 0.515463178500614 0.38648352 0.12529415 prediction 0.643498800548943 Functional Loss - ZC2HC1A ENSG00000104427 CDS Human protein_coding chr8:79588062 chr8:79588065 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51880 0 0 0 0 2 ZC2HC1A chr8:79588098 5'GT 79588098 Upstream 34bp
chr17 72739479 72739479 1 + G T KIRC 72739476 + 72739456 72739496 41 AAATCTTCTTTCGACAACATCAGGGTAGGTCCTCCCTTCCC AAATCTTCTTTCGACAACATCAGTGTAGGTCCTCCCTTCCC < 41bp 0.82170756198582 0.44605864139692 0.94121385 0.30275604 prediction 0.64341512397164 Functional Loss - RAB37 ENSG00000172794 CDS Human protein_coding chr17:72739476 chr17:72739479 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_51882 0 0 0 1 2 RAB37 chr17:72739427 3'AG 72739427 Downstream 53bp
chr17 72739479 72739479 1 + G T KIRC 72739476 + 72739456 72739496 41 AAATCTTCTTTCGACAACATCAGGGTAGGTCCTCCCTTCCC AAATCTTCTTTCGACAACATCAGTGTAGGTCCTCCCTTCCC < 41bp 0.82170756198582 0.44605864139692 0.94121385 0.30275604 prediction 0.64341512397164 Functional Loss - RAB37 ENSG00000172794 CDS Human protein_coding chr17:72739476 chr17:72739479 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_51882 0 0 0 1 2 RAB37 chr17:72739479 3'AG 72739479 Downstream 1bp
chr2 128184779 128184779 1 + G T BLCA 128184776 + 128184756 128184796 41 GCCCACTGCATGGATGAGTCCAAGAAGCTCCTTGTCAGGCT GCCCACTGCATGGATGAGTCCAATAAGCTCCTTGTCAGGCT < 41bp 0.821670727757813 0.457324340157071 0.63956034 0.07852024 prediction 0.643341455515627 Functional Loss - PROC ENSG00000115718 CDS Human protein_coding chr2:128184776 chr2:128184779 nonsynonymous SNV 0.338 1 24 hm5C_associated_SNPs_51884 0 0 1 0 2 PROC chr2:128184681 3'AG 128184681 Downstream 99bp
chr2 128184779 128184779 1 + G T BLCA 128184776 + 128184756 128184796 41 GCCCACTGCATGGATGAGTCCAAGAAGCTCCTTGTCAGGCT GCCCACTGCATGGATGAGTCCAATAAGCTCCTTGTCAGGCT < 41bp 0.821670727757813 0.457324340157071 0.63956034 0.07852024 prediction 0.643341455515627 Functional Loss - PROC ENSG00000115718 CDS Human protein_coding chr2:128184776 chr2:128184779 nonsynonymous SNV 0.338 1 24 hm5C_associated_SNPs_51884 0 0 1 0 2 PROC chr2:128184798 5'GT 128184798 Upstream 20bp
chr19 50208306 50208306 1 + G T LUSC 50208303 + 50208283 50208323 41 CCACGCCTCTGCAGGCAGCTCGCGCTGGGAATGCCGTCCAT CCACGCCTCTGCAGGCAGCTCGCTCTGGGAATGCCGTCCAT < 41bp 0.821656645301982 0.442716213149723 0.18765998 0.066131145 prediction 0.643313290603965 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50208303 chr19:50208306 nonsynonymous SNV 0.010 5 24 hm5C_associated_SNPs_51888 0 0 0 0 3 CPT1C chr19:50208264 3'AG 50208264 Downstream 43bp
chr19 50208306 50208306 1 + G T LUSC 50208303 + 50208283 50208323 41 CCACGCCTCTGCAGGCAGCTCGCGCTGGGAATGCCGTCCAT CCACGCCTCTGCAGGCAGCTCGCTCTGGGAATGCCGTCCAT < 41bp 0.821656645301982 0.442716213149723 0.18765998 0.066131145 prediction 0.643313290603965 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50208303 chr19:50208306 nonsynonymous SNV 0.010 5 24 hm5C_associated_SNPs_51888 0 0 0 0 3 CPT1C chr19:50208297 3'AG 50208297 Downstream 10bp
chr19 50208306 50208306 1 + G T LUSC 50208303 + 50208283 50208323 41 CCACGCCTCTGCAGGCAGCTCGCGCTGGGAATGCCGTCCAT CCACGCCTCTGCAGGCAGCTCGCTCTGGGAATGCCGTCCAT < 41bp 0.821656645301982 0.442716213149723 0.18765998 0.066131145 prediction 0.643313290603965 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50208303 chr19:50208306 nonsynonymous SNV 0.010 5 24 hm5C_associated_SNPs_51888 0 0 0 0 3 CPT1C chr19:50208371 5'GT 50208371 Upstream 66bp
chr11 60638480 60638480 1 + G T COAD 60638477 + 60638457 60638497 41 ACTTCGTCCTCGTAGTGTCCCAAGAAATGGCCTTGACACAC ACTTCGTCCTCGTAGTGTCCCAATAAATGGCCTTGACACAC < 41bp 0.876968265899241 0.555321509612694 0.09084886 0.032331258 prediction 0.643293512573093 Functional Loss - ZP1 ENSG00000149506 CDS Human protein_coding chr11:60638477 chr11:60638480 stopgain 0.630 0 24 hm5C_associated_SNPs_51891 0 0 0 0 1 ZP1 chr11:60638430 3'AG 60638430 Downstream 51bp
chr7 2418821 2418821 1 + A C LUAD 2418817 + 2418797 2418837 41 TGGAAGATTTCCGGAAGTACCGGAAAATGGCCCAGGAGCTC TGGAAGATTTCCGGAAGTACCGGACAATGGCCCAGGAGCTC < 41bp 0.821637925851896 0.444438728473446 0.8852337 0.81661487 prediction 0.643275851703793 Functional Loss - EIF3B ENSG00000106263 CDS Human protein_coding chr7:2418817 chr7:2418821 nonsynonymous SNV 0.978 1 25 hm5C_associated_SNPs_51892 0 0 1 0 2 EIF3B chr7:2418769 3'AG 2418769 Downstream 53bp
chr7 2418821 2418821 1 + A C LUAD 2418817 + 2418797 2418837 41 TGGAAGATTTCCGGAAGTACCGGAAAATGGCCCAGGAGCTC TGGAAGATTTCCGGAAGTACCGGACAATGGCCCAGGAGCTC < 41bp 0.821637925851896 0.444438728473446 0.8852337 0.81661487 prediction 0.643275851703793 Functional Loss - EIF3B ENSG00000106263 CDS Human protein_coding chr7:2418817 chr7:2418821 nonsynonymous SNV 0.978 1 25 hm5C_associated_SNPs_51892 0 0 1 0 2 EIF3B chr7:2418877 5'GT 2418877 Upstream 57bp
chrX 49021059 49021059 1 + G T LUSC 49021056 + 49021036 49021076 41 ATCTCCCAGCTGTTAGCGTGCTGGACTCTGCGGACATAGAG ATCTCCCAGCTGTTAGCGTGCTGTACTCTGCGGACATAGAG < 41bp 0.851930978782103 0.530310082431336 0.16486898 0.10057297 prediction 0.643241792701534 Functional Loss - MAGIX ENSG00000017621 CDS Human other chrX:49021056 chrX:49021059 nonsynonymous SNV 0.291 1 24 hm5C_associated_SNPs_51893 0 0 0 0 2 MAGIX chrX:49021045 3'AG 49021045 Downstream 15bp
chrX 49021059 49021059 1 + G T LUSC 49021056 + 49021036 49021076 41 ATCTCCCAGCTGTTAGCGTGCTGGACTCTGCGGACATAGAG ATCTCCCAGCTGTTAGCGTGCTGTACTCTGCGGACATAGAG < 41bp 0.851930978782103 0.530310082431336 0.16486898 0.10057297 prediction 0.643241792701534 Functional Loss - MAGIX ENSG00000017621 CDS Human other chrX:49021056 chrX:49021059 nonsynonymous SNV 0.291 1 24 hm5C_associated_SNPs_51893 0 0 0 0 2 MAGIX chrX:49021127 5'GT 49021127 Upstream 69bp
chr7 99649187 99649187 1 + G T rs566355968 99649184 + 99649164 99649204 41 GCCTCGGGCCTCCCAAAGTGCTGGAATTACAGGTGTGAGCC GCCTCGGGCCTCCCAAAGTGCTGTAATTACAGGTGTGAGCC < 41bp 0.831811541911265 0.510196942240871 0.6055251 0.41329592 prediction 0.643229199340788 Functional Loss - ZSCAN21 ENSG00000166529 UTR5 Human protein_coding chr7:99649184 chr7:99649187 . . 0 24 hm5C_associated_SNPs_51894 0 0 0 0 2 ZSCAN21 chr7:99649101 3'AG 99649101 Downstream 87bp
chr7 99649187 99649187 1 + G T rs566355968 99649184 + 99649164 99649204 41 GCCTCGGGCCTCCCAAAGTGCTGGAATTACAGGTGTGAGCC GCCTCGGGCCTCCCAAAGTGCTGTAATTACAGGTGTGAGCC < 41bp 0.831811541911265 0.510196942240871 0.6055251 0.41329592 prediction 0.643229199340788 Functional Loss - ZSCAN21 ENSG00000166529 UTR5 Human protein_coding chr7:99649184 chr7:99649187 . . 0 24 hm5C_associated_SNPs_51894 0 0 0 0 2 ZSCAN21 chr7:99649233 5'GT 99649233 Upstream 47bp
chr11 7509403 7509403 1 + G T UCEC 7509400 + 7509380 7509420 41 AAGCAACGAGGGCATACATTCAAGAATTCCAAGAGTTCTCA AAGCAACGAGGGCATACATTCAATAATTCCAAGAGTTCTCA < 41bp 0.821597961542807 0.4713465444575 0.28721654 0.08434698 prediction 0.643195923085613 Functional Loss - OLFML1 ENSG00000183801 CDS Human protein_coding chr11:7509400 chr11:7509403 stopgain 1.000 1 24 hm5C_associated_SNPs_51897 0 0 0 0 1 OLFML1 chr11:7509358 3'AG 7509358 Downstream 46bp
chr19 50957354 50957354 1 + G T SARC 50957352 + 50957332 50957372 41 GCTTTGTGATTGAGAGTGCGCAGCGGGAAGACGAGGGCCGC GCTTTGTGATTGAGAGTGCGCATCGGGAAGACGAGGGCCGC < 41bp 0.821589894113904 0.495497033981157 0.62564003 0.08908185 prediction 0.643179788227809 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957352 chr19:50957354 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_51898 0 0 0 0 2 MYBPC2 chr19:50957277 3'AG 50957277 Downstream 78bp
chr19 50957354 50957354 1 + G T SARC 50957352 + 50957332 50957372 41 GCTTTGTGATTGAGAGTGCGCAGCGGGAAGACGAGGGCCGC GCTTTGTGATTGAGAGTGCGCATCGGGAAGACGAGGGCCGC < 41bp 0.821589894113904 0.495497033981157 0.62564003 0.08908185 prediction 0.643179788227809 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957352 chr19:50957354 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_51898 0 0 0 0 2 MYBPC2 chr19:50957436 5'GT 50957436 Upstream 83bp
chr17 4352620 4352620 1 + G T ESCA 4352617 + 4352597 4352637 41 TGGGCCCCCAAGTTTCTGCTCGAGGCACGCGTGGTTCACGG TGGGCCCCCAAGTTTCTGCTCGATGCACGCGTGGTTCACGG < 41bp 0.821572736900763 0.437824398335904 0.9110753 0.2450709 prediction 0.643145473801526 Functional Loss - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4352617 chr17:4352620 nonsynonymous SNV 0.006 1 24 hm5C_associated_SNPs_51900 0 0 0 0 2 SPNS3 chr17:4352530 3'AG 4352530 Downstream 91bp
chr17 4352620 4352620 1 + G T ESCA 4352617 + 4352597 4352637 41 TGGGCCCCCAAGTTTCTGCTCGAGGCACGCGTGGTTCACGG TGGGCCCCCAAGTTTCTGCTCGATGCACGCGTGGTTCACGG < 41bp 0.821572736900763 0.437824398335904 0.9110753 0.2450709 prediction 0.643145473801526 Functional Loss - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4352617 chr17:4352620 nonsynonymous SNV 0.006 1 24 hm5C_associated_SNPs_51900 0 0 0 0 2 SPNS3 chr17:4352682 5'GT 4352682 Upstream 63bp
chr12 81111266 81111266 1 + G T LUSC 81111263 + 81111243 81111283 41 TGCAGGAGTTGCTGAGAGAGCAGGTGGAGAACTACTATAGC TGCAGGAGTTGCTGAGAGAGCAGTTGGAGAACTACTATAGC < 41bp 0.862941466193161 0.541370328237274 0.92695653 0.9062848 prediction 0.643142275911774 Functional Loss - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81111263 chr12:81111266 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51901 0 0 0 0 1 MYF5 chr12:81111343 5'GT 81111343 Upstream 78bp
chr6 26388327 26388327 1 + G T UCEC 26388324 + 26388304 26388344 41 GCATATCTGGAGGGTGGTACCCAGAGCCCCTCACAGTGTGG GCATATCTGGAGGGTGGTACCCATAGCCCCTCACAGTGTGG < 41bp 0.821550847451853 0.46236659202918 0.81540316 0.26177287 prediction 0.643101694903705 Functional Loss - BTN2A2 ENSG00000124508 CDS Human protein_coding chr6:26388324 chr6:26388327 stopgain 0.778 0 24 hm5C_associated_SNPs_51902 0 0 1 0 1 BTN2A2 chr6:26388241 3'AG 26388241 Downstream 87bp
chr7 101091052 101091052 1 + G T BRCA 101091049 + 101091029 101091069 41 AGATGCTGCCCTGGCTTCACCGGGAGCAACTGTGATGAGGG AGATGCTGCCCTGGCTTCACCGGTAGCAACTGTGATGAGGG < 41bp 0.874281394429328 0.552745465177257 0.90633094 0.23112935 prediction 0.643071858504142 Functional Loss - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101091049 chr7:101091052 synonymous SNV . 0 24 hm5C_associated_SNPs_51904 0 0 0 0 2 COL26A1 chr7:101090965 3'AG 101090965 Downstream 88bp
chr7 101091052 101091052 1 + G T BRCA 101091049 + 101091029 101091069 41 AGATGCTGCCCTGGCTTCACCGGGAGCAACTGTGATGAGGG AGATGCTGCCCTGGCTTCACCGGTAGCAACTGTGATGAGGG < 41bp 0.874281394429328 0.552745465177257 0.90633094 0.23112935 prediction 0.643071858504142 Functional Loss - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101091049 chr7:101091052 synonymous SNV . 0 24 hm5C_associated_SNPs_51904 0 0 0 0 2 COL26A1 chr7:101090971 3'AG 101090971 Downstream 82bp
chr2 27276872 27276872 1 + G T CESC 27276869 + 27276849 27276889 41 CCTTCTCCTACAGTGACTGCCAGGAACTGCTAAACCAGCTA CCTTCTCCTACAGTGACTGCCAGTAACTGCTAAACCAGCTA < 41bp 0.82151840319154 0.46705194483482 0.9148786 0.075953335 prediction 0.64303680638308 Functional Loss - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27276869 chr2:27276872 stopgain 1.000 0 24 hm5C_associated_SNPs_51907 0 0 1 0 1 AGBL5 chr2:27276927 5'GT 27276927 Upstream 56bp
chr1 152944414 152944414 1 + G T LUAD 152944411 + 152944391 152944431 41 CAGCAGCAGCAGTGCCCACCCCAGAGGGCCCAGCAGCAGCA CAGCAGCAGCAGTGCCCACCCCATAGGGCCCAGCAGCAGCA < 41bp 0.854639254713362 0.533162982607401 0.56815714 0.23637292 prediction 0.642952544211922 Functional Loss - SPRR4 ENSG00000184148 CDS Human protein_coding chr1:152944411 chr1:152944414 nonsynonymous SNV 0.364 2 24 hm5C_associated_SNPs_51910 0 0 0 0 1 SPRR4 chr1:152944347 3'AG 152944347 Downstream 68bp
chr16 30776790 30776790 1 + G T LUSC 30776788 + 30776768 30776808 41 CTGGGAGCTCCTCAGGCTTCCAGGGGGGCCAGATCACACTC CTGGGAGCTCCTCAGGCTTCCATGGGGGCCAGATCACACTC < 41bp 0.821469677296057 0.498079918727815 0.929813 0.9051091 prediction 0.642939354592114 Functional Loss - RNF40 ENSG00000103549 CDS Human protein_coding chr16:30776788 chr16:30776790 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_51911 0 0 1 0 2 RNF40 chr16:30776746 3'AG 30776746 Downstream 45bp
chr16 30776790 30776790 1 + G T LUSC 30776788 + 30776768 30776808 41 CTGGGAGCTCCTCAGGCTTCCAGGGGGGCCAGATCACACTC CTGGGAGCTCCTCAGGCTTCCATGGGGGCCAGATCACACTC < 41bp 0.821469677296057 0.498079918727815 0.929813 0.9051091 prediction 0.642939354592114 Functional Loss - RNF40 ENSG00000103549 CDS Human protein_coding chr16:30776788 chr16:30776790 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_51911 0 0 1 0 2 RNF40 chr16:30776820 5'GT 30776820 Upstream 31bp
chr3 56655620 56655620 1 + G T MESO 56655617 + 56655597 56655637 41 TCCTGCCTTTAGCTGAAAATCAAGAAGAGAGTTTTGGTTCT TCCTGCCTTTAGCTGAAAATCAATAAGAGAGTTTTGGTTCT < 41bp 0.834482916631446 0.513031746699953 0.523738 0.1605171 prediction 0.642902339862985 Functional Loss - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56655617 chr3:56655620 stopgain 1.000 0 24 hm5C_associated_SNPs_51913 0 0 1 0 1 CCDC66 chr3:56655560 3'AG 56655560 Downstream 61bp
chr20 61939423 61939423 1 + G T LUSC 61939420 + 61939400 61939440 41 GCTGTGCGCCGCCTCCGCTACAAGGGGGGGAACACGTTCAC GCTGTGCGCCGCCTCCGCTACAATGGGGGGAACACGTTCAC < 41bp 0.821419807377672 0.463713921375887 0.89669156 0.24771756 prediction 0.642839614755344 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61939420 chr20:61939423 nonsynonymous SNV 0.216 3 24 hm5C_associated_SNPs_51918 0 0 0 0 1 COL20A1 chr20:61939442 5'GT 61939442 Upstream 20bp
chr14 23847917 23847917 1 + G T UCEC 23847914 + 23847894 23847934 41 AATCAGGAGGACCACATCCGCTAGATCTACTCTCCCACTCA AATCAGGAGGACCACATCCGCTATATCTACTCTCCCACTCA < 41bp 0.870197543140171 0.548796434740898 0.33962056 0.11682102 prediction 0.642802216798546 Functional Loss - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23847914 chr14:23847917 nonsynonymous SNV 0.007 1 24 hm5C_associated_SNPs_51920 0 0 0 0 1 CMTM5 chr14:23847878 3'AG 23847878 Downstream 40bp
chr16 29858552 29858552 1 + A C COAD 29858548 + 29858528 29858568 41 TCCAGAGGGTCCAGAAGGTCCGAGAGCTGGAACTGGTCTAT TCCAGAGGGTCCAGAAGGTCCGAGCGCTGGAACTGGTCTAT < 41bp 0.881503006856482 0.5601389903463 0.8495015 0.38783306 prediction 0.642728033020365 Functional Loss - MVP ENSG00000013364 CDS Human protein_coding chr16:29858548 chr16:29858552 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_51923 0 0 1 0 1 MVP chr16:29858518 3'AG 29858518 Downstream 35bp
chr3 52538065 52538065 1 + G T PAAD 52538062 + 52538042 52538082 41 AGCTGTGTGTGCAGGGAAAGCGAGGTGGGGGATGGGCGTGC AGCTGTGTGTGCAGGGAAAGCGATGTGGGGGATGGGCGTGC < 41bp 0.844587482616689 0.523236914066441 0.9115977 0.8452593 prediction 0.642701137100495 Functional Loss - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52538062 chr3:52538065 nonsynonymous SNV 0.543 2 24 hm5C_associated_SNPs_51925 0 0 0 0 1 STAB1 chr3:52538044 3'AG 52538044 Downstream 22bp
chr7 141429420 141429420 1 + G T COAD 141429417 + 141429397 141429437 41 CTCTGGGACCCACACAGGATCAAGAAGCACAAAACGCCTGG CTCTGGGACCCACACAGGATCAATAAGCACAAAACGCCTGG < 41bp 0.86649133412796 0.545152520870966 0.19850317 0.044074655 prediction 0.642677626513988 Functional Loss - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141429417 chr7:141429420 nonsynonymous SNV 0.013 0 24 hm5C_associated_SNPs_51926 0 0 0 0 2 WEE2 chr7:141429331 3'AG 141429331 Downstream 90bp
chr7 141429420 141429420 1 + G T COAD 141429417 + 141429397 141429437 41 CTCTGGGACCCACACAGGATCAAGAAGCACAAAACGCCTGG CTCTGGGACCCACACAGGATCAATAAGCACAAAACGCCTGG < 41bp 0.86649133412796 0.545152520870966 0.19850317 0.044074655 prediction 0.642677626513988 Functional Loss - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141429417 chr7:141429420 nonsynonymous SNV 0.013 0 24 hm5C_associated_SNPs_51926 0 0 0 0 2 WEE2 chr7:141429473 5'GT 141429473 Upstream 54bp
chr21 47537842 47537842 1 + G T STAD 47537839 + 47537819 47537859 41 GTCCAGGGGAGCGAGGAGACCAAGGCGGCAAGGTAAGTGGC GTCCAGGGGAGCGAGGAGACCAATGCGGCAAGGTAAGTGGC < 41bp 0.821292386725028 0.453840614955273 0.89037275 0.41950774 prediction 0.642584773450057 Functional Loss - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47537839 chr21:47537842 nonsynonymous SNV 0.108 5 24 hm5C_associated_SNPs_51928 0 0 0 0 2 COL6A2 chr21:47537788 3'AG 47537788 Downstream 55bp
chr21 47537842 47537842 1 + G T STAD 47537839 + 47537819 47537859 41 GTCCAGGGGAGCGAGGAGACCAAGGCGGCAAGGTAAGTGGC GTCCAGGGGAGCGAGGAGACCAATGCGGCAAGGTAAGTGGC < 41bp 0.821292386725028 0.453840614955273 0.89037275 0.41950774 prediction 0.642584773450057 Functional Loss - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47537839 chr21:47537842 nonsynonymous SNV 0.108 5 24 hm5C_associated_SNPs_51928 0 0 0 0 2 COL6A2 chr21:47537850 5'GT 47537850 Upstream 9bp
chrX 114856633 114856633 1 + G T UCS 114856630 + 114856610 114856650 41 GGAAGCTAATATGCCATTACCAGGATATAAAGTGAGAGAAA GGAAGCTAATATGCCATTACCAGTATATAAAGTGAGAGAAA < 41bp 0.821286776355684 0.482270786188249 0.74014646 0.061577767 prediction 0.642573552711367 Functional Loss - PLS3 ENSG00000102024 CDS Human protein_coding chrX:114856630 chrX:114856633 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51929 0 0 1 0 3 PLS3 chrX:114856558 3'AG 114856558 Downstream 76bp
chrX 114856633 114856633 1 + G T UCS 114856630 + 114856610 114856650 41 GGAAGCTAATATGCCATTACCAGGATATAAAGTGAGAGAAA GGAAGCTAATATGCCATTACCAGTATATAAAGTGAGAGAAA < 41bp 0.821286776355684 0.482270786188249 0.74014646 0.061577767 prediction 0.642573552711367 Functional Loss - PLS3 ENSG00000102024 CDS Human protein_coding chrX:114856630 chrX:114856633 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51929 0 0 1 0 3 PLS3 chrX:114856640 5'GT 114856640 Upstream 8bp
chrX 114856633 114856633 1 + G T UCS 114856630 + 114856610 114856650 41 GGAAGCTAATATGCCATTACCAGGATATAAAGTGAGAGAAA GGAAGCTAATATGCCATTACCAGTATATAAAGTGAGAGAAA < 41bp 0.821286776355684 0.482270786188249 0.74014646 0.061577767 prediction 0.642573552711367 Functional Loss - PLS3 ENSG00000102024 CDS Human protein_coding chrX:114856630 chrX:114856633 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51929 0 0 1 0 3 PLS3 chrX:114856721 5'GT 114856721 Upstream 89bp
chr8 110656396 110656396 1 + G T rs7817773 110656393 + 110656373 110656413 41 CCCTCAGGCATCCACTCTACCCGGGGGCCGCCAGCCGCACG CCCTCAGGCATCCACTCTACCCGTGGGCCGCCAGCCGCACG < 41bp 0.863605796708193 0.542372676421638 0.9421849 0.5003553 prediction 0.64246624057311 Functional Loss - LOC100132813 ENSG00000248050 CDS Human antisense chr8:110656393 chr8:110656396 synonymous SNV . 0 24 hm5C_associated_SNPs_51932 0 0 0 0 1 LOC100132813 chr8:110656451 5'GT 110656451 Upstream 56bp
chr19 50203965 50203965 1 + G T LUSC 50203962 + 50203942 50203982 41 GGTGGACAACACCACGGGCTCCGGGGGGTCCTGGCAGCCGC GGTGGACAACACCACGGGCTCCGTGGGGTCCTGGCAGCCGC < 41bp 0.821226778946241 0.448448274480201 0.92769635 0.34588957 prediction 0.642453557892481 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50203962 chr19:50203965 synonymous SNV . 0 24 hm5C_associated_SNPs_51934 0 0 0 0 1 CPT1C chr19:50203941 3'AG 50203941 Downstream 25bp
chr7 48146550 48146550 1 + G T LUAD 48146547 + 48146527 48146567 41 CAGAGTTTGAGCAGATTGTCCTGGGGAAGCGGGTCATCCGG CAGAGTTTGAGCAGATTGTCCTGTGGAAGCGGGTCATCCGG < 41bp 0.88107112492688 0.559851419192918 0.7884211 0.41195723 prediction 0.642439411467923 Functional Loss - UPP1 ENSG00000183696 CDS Human protein_coding chr7:48146547 chr7:48146550 nonsynonymous SNV 0.929 4 24 hm5C_associated_SNPs_51935 0 0 1 0 1 UPP1 chr7:48146470 3'AG 48146470 Downstream 81bp
chr1 201286774 201286774 1 + G T LUSC 201286771 + 201286751 201286791 41 AACCAGAACGTCCAGCAGGCCGCGGCAGGGGCCCTGCGCAA AACCAGAACGTCCAGCAGGCCGCTGCAGGGGCCCTGCGCAA < 41bp 0.821175840929928 0.444819905382887 0.8404468 0.29075137 prediction 0.642351681859856 Functional Loss - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201286771 chr1:201286774 synonymous SNV . 0 24 hm5C_associated_SNPs_51938 0 0 0 0 1 PKP1 chr1:201286700 3'AG 201286700 Downstream 75bp
chr10 86017690 86017690 1 + G T LUSC 86017687 + 86017667 86017707 41 GCAAGGACGCTGCTGCTCGGCTGGGGCCCCTATGCCATCCT GCAAGGACGCTGCTGCTCGGCTGTGGCCCCTATGCCATCCT < 41bp 0.82117023029016 0.451097461976914 0.7121328 0.08406055 prediction 0.642340460580319 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86017687 chr10:86017690 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_51939 0 0 0 0 2 RGR chr10:86017649 3'AG 86017649 Downstream 42bp
chr10 86017690 86017690 1 + G T LUSC 86017687 + 86017667 86017707 41 GCAAGGACGCTGCTGCTCGGCTGGGGCCCCTATGCCATCCT GCAAGGACGCTGCTGCTCGGCTGTGGCCCCTATGCCATCCT < 41bp 0.82117023029016 0.451097461976914 0.7121328 0.08406055 prediction 0.642340460580319 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86017687 chr10:86017690 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_51939 0 0 0 0 2 RGR chr10:86017762 5'GT 86017762 Upstream 73bp
chr5 113698942 113698942 1 + G T SARC 113698939 + 113698919 113698959 41 GGTCATCGAGACCGAGCTGTCGTGGGGCGCCTACGACAAGG GGTCATCGAGACCGAGCTGTCGTTGGGCGCCTACGACAAGG < 41bp 0.821136201267662 0.460631021988702 0.9273628 0.28373897 prediction 0.642272402535324 Functional Loss - KCNN2 ENSG00000080709 CDS Human protein_coding chr5:113698939 chr5:113698942 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_51940 0 0 0 0 1 KCNN2 chr5:113698958 5'GT 113698958 Upstream 17bp
chr12 107254088 107254088 1 + G T HNSC 107254085 + 107254065 107254105 41 CACTGGCTATGGGAATGCTGCAGGACTGTTGGCGGCCAGGG CACTGGCTATGGGAATGCTGCAGTACTGTTGGCGGCCAGGG < 41bp 0.821125499004323 0.471219312280804 0.40824768 0.14732626 prediction 0.642250998008645 Functional Loss - RIC8B ENSG00000111785 CDS Human protein_coding chr12:107254085 chr12:107254088 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51941 0 0 1 0 1 RIC8B chr12:107254046 3'AG 107254046 Downstream 43bp
chrX 69646998 69646998 1 + G T UCEC 69646995 + 69646975 69647015 41 TCCCTTTCCCAGCTGGCTCCCGAGAACACCCTGATGTCCTT TCCCTTTCCCAGCTGGCTCCCGATAACACCCTGATGTCCTT < 41bp 0.821079659788793 0.450727451784702 0.5774779 0.16207203 prediction 0.642159319577586 Functional Loss - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69646995 chrX:69646998 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51945 0 0 0 0 2 GDPD2 chrX:69646987 3'AG 69646987 Downstream 12bp
chrX 69646998 69646998 1 + G T UCEC 69646995 + 69646975 69647015 41 TCCCTTTCCCAGCTGGCTCCCGAGAACACCCTGATGTCCTT TCCCTTTCCCAGCTGGCTCCCGATAACACCCTGATGTCCTT < 41bp 0.821079659788793 0.450727451784702 0.5774779 0.16207203 prediction 0.642159319577586 Functional Loss - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69646995 chrX:69646998 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51945 0 0 0 0 2 GDPD2 chrX:69647069 5'GT 69647069 Upstream 72bp
chr16 23379269 23379269 1 + G T GBM 23379266 + 23379246 23379286 41 GGCACTTCCTTCGGCCAACCCTGGAACTGAATTCGGTGAGT GGCACTTCCTTCGGCCAACCCTGTAACTGAATTCGGTGAGT < 41bp 0.820980080627019 0.451106233352017 0.8319673 0.334194 prediction 0.641960161254039 Functional Loss - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23379266 chr16:23379269 nonsynonymous SNV 0.923 4 24 hm5C_associated_SNPs_51949 0 0 0 0 2 SCNN1B chr16:23379177 3'AG 23379177 Downstream 93bp
chr16 23379269 23379269 1 + G T GBM 23379266 + 23379246 23379286 41 GGCACTTCCTTCGGCCAACCCTGGAACTGAATTCGGTGAGT GGCACTTCCTTCGGCCAACCCTGTAACTGAATTCGGTGAGT < 41bp 0.820980080627019 0.451106233352017 0.8319673 0.334194 prediction 0.641960161254039 Functional Loss - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23379266 chr16:23379269 nonsynonymous SNV 0.923 4 24 hm5C_associated_SNPs_51949 0 0 0 0 2 SCNN1B chr16:23379280 5'GT 23379280 Upstream 12bp
chr1 150900250 150900250 1 + A C GBM 150900246 + 150900226 150900266 41 AGCAACAGCTACAGTGGAGTCTGAAGAGATTGCAGAGCTGC AGCAACAGCTACAGTGGAGTCTGACGAGATTGCAGAGCTGC < 41bp 0.820975564468228 0.429940946125654 0.10780266 0.13333124 prediction 0.641951128936456 Functional Loss - SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150900246 chr1:150900250 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_51950 0 0 1 0 1 SETDB1 chr1:150900180 3'AG 150900180 Downstream 71bp
chr8 145245734 145245734 1 + G T ACC 145245731 + 145245711 145245751 41 CCCTGGAGTACCTAGCCAACCTGGACCGAGCCCCAGACCCC CCCTGGAGTACCTAGCCAACCTGTACCGAGCCCCAGACCCC < 41bp 0.863476335092637 0.542533520973787 0.43520692 0.15261257 prediction 0.6418856282377 Functional Loss - MROH1 ENSG00000179832 CDS Human protein_coding chr8:145245731 chr8:145245734 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51953 0 0 1 0 1 MROH1 chr8:145245687 3'AG 145245687 Downstream 48bp
chr7 100552935 100552935 1 + G T LUAD 100552932 + 100552912 100552952 41 GGGACAGTGTGCTTGCCTTCCGGGGTTTTCTGGGGACCGCT GGGACAGTGTGCTTGCCTTCCGGTGTTTTCTGGGGACCGCT < 41bp 0.820928702806453 0.457339620529239 0.90483755 0.47952577 prediction 0.641857405612906 Functional Loss - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100552932 chr7:100552935 nonsynonymous SNV 0.003 2 24 hm5C_associated_SNPs_51955 0 0 0 0 1 MUC3A chr7:100552881 3'AG 100552881 Downstream 55bp
chr7 20762799 20762799 1 + G T LUAD 20762796 + 20762776 20762816 41 GATTGAAACCGCAGCAATGACTGGATTTGCCAACAAAGATA GATTGAAACCGCAGCAATGACTGTATTTGCCAACAAAGATA < 41bp 0.82111564232906 0.500198888427066 0.3788942 0.11651972 prediction 0.641833507803987 Functional Loss - ABCB5 ENSG00000004846 CDS Human protein_coding chr7:20762796 chr7:20762799 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_51956 0 0 0 0 1 ABCB5 chr7:20762842 5'GT 20762842 Upstream 44bp
chr20 62848497 62848497 1 + G T SARC 62848495 + 62848475 62848515 41 AACGTGGCCCCCGCCACACCCAGGGCCAACTTGGCCAAGGA AACGTGGCCCCCGCCACACCCATGGCCAACTTGGCCAAGGA < 41bp 0.820902651762814 0.486718711693405 0.95984685 0.5061808 prediction 0.641805303525629 Functional Loss - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62848495 chr20:62848497 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_51957 0 0 0 0 1 MYT1 chr20:62848420 3'AG 62848420 Downstream 78bp
chr7 152551558 152551558 1 + G T LUAD 152551555 + 152551535 152551575 41 TCTCGTAGCCCGAGTTCTTTCAGGTCTGCCACACCAAGAAG TCTCGTAGCCCGAGTTCTTTCAGTTCTGCCACACCAAGAAG < 41bp 0.86701632226934 0.546176015851136 0.8624518 0.42306045 prediction 0.641680612836409 Functional Loss - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152551555 chr7:152551558 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_51961 0 0 0 0 1 ACTR3B chr7:152551543 3'AG 152551543 Downstream 16bp
chr10 103912283 103912283 1 + G T COAD 103912280 + 103912260 103912300 41 CAATAAGTTCGCCAAAGCGACAGGAGCTGTGAGTTCCGGGC CAATAAGTTCGCCAAAGCGACAGTAGCTGTGAGTTCCGGGC < 41bp 0.820836209419811 0.472510474429037 0.8378215 0.46761814 prediction 0.641672418839621 Functional Loss - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103912280 chr10:103912283 nonsynonymous SNV 0.966 3 24 hm5C_associated_SNPs_51962 0 0 1 0 1 NOLC1 chr10:103912287 5'GT 103912287 Upstream 5bp
chr17 72470012 72470012 1 + G T LUAD 72470009 + 72469989 72470029 41 GAGGTTGAGGTGTCCGTGTTCCCGGGTGAGCCCCTCCTTCC GAGGTTGAGGTGTCCGTGTTCCCTGGTGAGCCCCTCCTTCC < 41bp 0.820833408528653 0.461423570392955 0.93927693 0.46764082 prediction 0.641666817057306 Functional Loss - CD300A ENSG00000167851 CDS Human protein_coding chr17:72470009 chr17:72470012 synonymous SNV . 0 24 hm5C_associated_SNPs_51963 0 0 0 0 1 CD300A chr17:72470013 5'GT 72470013 Upstream 2bp
chr15 97326974 97326974 1 + G T UCEC 97326971 + 97326951 97326991 41 TTTTCAGAGGCTGCCTTGTCCTAGGTATCTGATGTCCTGCC TTTTCAGAGGCTGCCTTGTCCTATGTATCTGATGTCCTGCC < 41bp 0.850330768342752 0.529572129188757 0.51996446 0.23951387 prediction 0.641517278307989 Functional Loss - SPATA8;SPATA8 ENSG00000185594 CDS Human protein_coding chr15:97326971 chr15:97326974 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_51968 0 0 0 0 1 SPATA8;SPATA8 chr15:97326974 5'GT 97326974 Upstream 1bp
chr15 80464586 80464586 1 + G T UCEC 80464583 + 80464563 80464603 41 GGAATGGTCCTTATGAACGACTGGAGTGGTAATTACTGGAG GGAATGGTCCTTATGAACGACTGTAGTGGTAATTACTGGAG < 41bp 0.820741799926312 0.466992335396221 0.5728517 0.30864033 prediction 0.641483599852624 Functional Loss - FAH ENSG00000103876 CDS Human protein_coding chr15:80464583 chr15:80464586 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_51969 0 0 0 0 2 FAH chr15:80464491 3'AG 80464491 Downstream 96bp
chr15 80464586 80464586 1 + G T UCEC 80464583 + 80464563 80464603 41 GGAATGGTCCTTATGAACGACTGGAGTGGTAATTACTGGAG GGAATGGTCCTTATGAACGACTGTAGTGGTAATTACTGGAG < 41bp 0.820741799926312 0.466992335396221 0.5728517 0.30864033 prediction 0.641483599852624 Functional Loss - FAH ENSG00000103876 CDS Human protein_coding chr15:80464583 chr15:80464586 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_51969 0 0 0 0 2 FAH chr15:80464590 5'GT 80464590 Upstream 5bp
chr16 20926899 20926899 1 + G T UCEC 20926896 + 20926876 20926916 41 AGATGACAACGGCAACACGACAAGAAGTCCTTGGCCTCTAC AGATGACAACGGCAACACGACAATAAGTCCTTGGCCTCTAC < 41bp 0.820717267786316 0.467924957759776 0.27277678 0.05055961 prediction 0.641434535572633 Functional Loss - LYRM1 ENSG00000102897 CDS Human protein_coding chr16:20926896 chr16:20926899 stopgain 1.000 1 24 hm5C_associated_SNPs_51970 0 0 1 0 1 LYRM1 chr16:20926878 3'AG 20926878 Downstream 22bp
chr1 205550012 205550012 1 + G T LUAD 205550009 + 205549989 205550029 41 TCCAAAGGACGGGGCAGGGACCCGAGTGTCCTATGCCTTCT TCCAAAGGACGGGGCAGGGACCCTAGTGTCCTATGCCTTCT < 41bp 0.867704584239249 0.547091869426794 0.8991091 0.32732126 prediction 0.641225429624909 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205550009 chr1:205550012 nonsynonymous SNV 0.401 0 24 hm5C_associated_SNPs_51974 0 0 0 0 1 MFSD4A chr1:205550049 5'GT 205550049 Upstream 38bp
chr1 171753568 171753568 1 + G T LUAD 171753565 + 171753545 171753585 41 CGATGGGGACACGGGGGAGCCACGCTACACCCTCCACGTGG CGATGGGGACACGGGGGAGCCACTCTACACCCTCCACGTGG < 41bp 0.820606961158489 0.455712786967713 0.29982752 0.37714183 prediction 0.641213922316979 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171753565 chr1:171753568 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51975 0 0 1 0 1 METTL13 chr1:171753639 5'GT 171753639 Upstream 72bp
chr11 2939285 2939285 1 + G T LUSC 2939282 + 2939262 2939302 41 CTGCTGCGGCTGCCAGACGTCCCGAGGATCTTCCTGGTGAA CTGCTGCGGCTGCCAGACGTCCCTAGGATCTTCCTGGTGAA < 41bp 0.820599276736476 0.462405696165554 0.23111999 0.14307165 prediction 0.641198553472953 Functional Loss - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2939282 chr11:2939285 synonymous SNV . 0 24 hm5C_associated_SNPs_51977 0 0 1 0 2 SLC22A18 chr11:2939218 3'AG 2939218 Downstream 68bp
chr11 2939285 2939285 1 + G T LUSC 2939282 + 2939262 2939302 41 CTGCTGCGGCTGCCAGACGTCCCGAGGATCTTCCTGGTGAA CTGCTGCGGCTGCCAGACGTCCCTAGGATCTTCCTGGTGAA < 41bp 0.820599276736476 0.462405696165554 0.23111999 0.14307165 prediction 0.641198553472953 Functional Loss - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2939282 chr11:2939285 synonymous SNV . 0 24 hm5C_associated_SNPs_51977 0 0 1 0 2 SLC22A18 chr11:2939325 5'GT 2939325 Upstream 41bp
chr12 54925595 54925595 1 + G T GBM 54925592 + 54925572 54925612 41 TCAGTTTCAGGGCCATGGCCCAAGAGGGACTTCGGGAGGTG TCAGTTTCAGGGCCATGGCCCAATAGGGACTTCGGGAGGTG < 41bp 0.820585298643591 0.451755690927738 0.43062854 0.15168256 prediction 0.641170597287181 Functional Loss - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54925592 chr12:54925595 stopgain 0.999 1 24 hm5C_associated_SNPs_51978 0 0 1 0 2 NCKAP1L chr12:54925527 3'AG 54925527 Downstream 69bp
chr12 54925595 54925595 1 + G T GBM 54925592 + 54925572 54925612 41 TCAGTTTCAGGGCCATGGCCCAAGAGGGACTTCGGGAGGTG TCAGTTTCAGGGCCATGGCCCAATAGGGACTTCGGGAGGTG < 41bp 0.820585298643591 0.451755690927738 0.43062854 0.15168256 prediction 0.641170597287181 Functional Loss - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54925592 chr12:54925595 stopgain 0.999 1 24 hm5C_associated_SNPs_51978 0 0 1 0 2 NCKAP1L chr12:54925609 5'GT 54925609 Upstream 15bp
chr19 18054116 18054116 1 + G T SARC 18054113 + 18054093 18054133 41 GAGGTGCCGCTGGAGGAGAACGTGAACCGCCGCGTGCTGGA GAGGTGCCGCTGGAGGAGAACGTTAACCGCCGCGTGCTGGA < 41bp 0.861079489661075 0.540506813931731 0.7065504 0.4813762 prediction 0.64114535145869 Functional Loss - CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18054113 chr19:18054116 synonymous SNV . 0 24 hm5C_associated_SNPs_51979 0 0 1 0 2 CCDC124 chr19:18054070 3'AG 18054070 Downstream 47bp
chr19 18054116 18054116 1 + G T SARC 18054113 + 18054093 18054133 41 GAGGTGCCGCTGGAGGAGAACGTGAACCGCCGCGTGCTGGA GAGGTGCCGCTGGAGGAGAACGTTAACCGCCGCGTGCTGGA < 41bp 0.861079489661075 0.540506813931731 0.7065504 0.4813762 prediction 0.64114535145869 Functional Loss - CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18054113 chr19:18054116 synonymous SNV . 0 24 hm5C_associated_SNPs_51979 0 0 1 0 2 CCDC124 chr19:18054184 5'GT 18054184 Upstream 69bp
chrX 65417580 65417580 1 + G T LUAD 65417577 + 65417557 65417597 41 TTTGAGAAAGTAACATACCGCTGGACAGTCCCCCCTCATGC TTTGAGAAAGTAACATACCGCTGTACAGTCCCCCCTCATGC < 41bp 0.820508267917327 0.454017020115779 0.27231765 0.1206651 prediction 0.641016535834653 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65417577 chrX:65417580 nonsynonymous SNV 0.913 5 24 hm5C_associated_SNPs_51981 0 0 1 0 1 HEPH chrX:65417525 3'AG 65417525 Downstream 56bp
chr3 49050296 49050296 1 + G T ESCA 49050293 + 49050273 49050313 41 GGGAAGGTGCACAGCTTGAGCTGGGCCCTGCGTGGTTATGA GGGAAGGTGCACAGCTTGAGCTGTGCCCTGCGTGGTTATGA < 41bp 0.820500449619281 0.443332734847473 0.5860619 0.060664654 prediction 0.641000899238562 Functional Loss - WDR6 ENSG00000178252 CDS Human protein_coding chr3:49050293 chr3:49050296 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51982 0 0 1 0 1 WDR6 chr3:49050347 5'GT 49050347 Upstream 52bp
chr20 30414714 30414714 1 + G T UCEC 30414711 + 30414691 30414731 41 GACGGGATCCTCTTCATGCACAAGATGAGGGTTTTGCACCT GACGGGATCCTCTTCATGCACAATATGAGGGTTTTGCACCT < 41bp 0.873783175087237 0.553282980696046 0.567737 0.09764695 prediction 0.641000388782381 Functional Loss - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30414711 chr20:30414714 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51983 0 0 0 0 1 MYLK2 chr20:30414741 5'GT 30414741 Upstream 28bp
chr19 15760957 15760957 1 + G T UCEC 15760954 + 15760934 15760974 41 CTCCAAGCCAAGGCCAAATCCAAGACTTTGGACTTCATTGA CTCCAAGCCAAGGCCAAATCCAATACTTTGGACTTCATTGA < 41bp 0.874650676692323 0.554193726367678 0.12893885 0.03319186 prediction 0.640913900649291 Functional Loss - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15760954 chr19:15760957 nonsynonymous SNV 0.896 1 24 hm5C_associated_SNPs_51986 0 0 0 0 1 CYP4F3 chr19:15760993 5'GT 15760993 Upstream 37bp
chr20 13260474 13260474 1 + A C rs538119716 13260470 + 13260450 13260490 41 CCTCAGACGACAGCAACTTCCTCAACCCCCCCAGGGGGTGG CCTCAGACGACAGCAACTTCCTCACCCCCCCCAGGGGGTGG < 41bp 0.820450832302292 0.407221265109633 0.21832845 0.023358792 prediction 0.640901664604583 Functional Loss - ISM1 ENSG00000101230 CDS Human protein_coding chr20:13260470 chr20:13260474 nonsynonymous SNV 0.912 1 25 hm5C_associated_SNPs_51987 0 0 0 0 1 ISM1 chr20:13260545 5'GT 13260545 Upstream 72bp
chr17 7186840 7186840 1 + G T LUSC 7186838 + 7186818 7186858 41 GTGGCTGGGGAGGCAGGGGCCTGAGGGACCCAGCTCCATCC GTGGCTGGGGAGGCAGGGGCCTTAGGGACCCAGCTCCATCC < 41bp 0.832235551185948 0.511797730661228 0.7556285 0.5032043 prediction 0.640875641049441 Functional Loss - SLC2A4 ENSG00000181856 CDS Human protein_coding chr17:7186838 chr17:7186840 stopgain 0.915 0 23 hm5C_associated_SNPs_51988 0 0 0 0 1 SLC2A4 chr17:7186792 3'AG 7186792 Downstream 49bp
chr4 177032769 177032769 1 + G T LUSC 177032766 + 177032746 177032786 41 GCAAGTGGGATTGCTGGCTGCTGGATGTCAGCCATGGAACA GCAAGTGGGATTGCTGGCTGCTGTATGTCAGCCATGGAACA < 41bp 0.820434250774559 0.482304134267757 0.5345041 0.42095834 prediction 0.640868501549118 Functional Loss - WDR17 ENSG00000150627 CDS Human protein_coding chr4:177032766 chr4:177032769 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_51989 0 0 1 0 2 WDR17 chr4:177032726 3'AG 177032726 Downstream 44bp
chr4 177032769 177032769 1 + G T LUSC 177032766 + 177032746 177032786 41 GCAAGTGGGATTGCTGGCTGCTGGATGTCAGCCATGGAACA GCAAGTGGGATTGCTGGCTGCTGTATGTCAGCCATGGAACA < 41bp 0.820434250774559 0.482304134267757 0.5345041 0.42095834 prediction 0.640868501549118 Functional Loss - WDR17 ENSG00000150627 CDS Human protein_coding chr4:177032766 chr4:177032769 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_51989 0 0 1 0 2 WDR17 chr4:177032854 5'GT 177032854 Upstream 86bp
chr17 7577142 7577142 1 - C A COAD 7577145 - 7577125 7577165 41 TCCTGAGTAGTGGTAATCTACTGGGACGGAACAGCTTTGAG TCCTGAGTAGTGGTAATCTACTGTGACGGAACAGCTTTGAG < 41bp 0.822440274171148 0.502012283431094 0.15240294 0.054140836 prediction 0.640855981480109 Functional Loss - TP53 ENSG00000141510 CDS Human protein_coding chr17:7577145 chr17:7577142 stopgain 0.953 1 24 hm5C_associated_SNPs_51990 0 0 1 0 1 TP53 chr17:7577155 3'AG 7577155 Downstream 14bp
chr1 167086597 167086597 1 + G T ACC 167086595 + 167086575 167086615 41 ACCGGGGGTCAGAGCAGACGCAGAGTGTCCAGGCATGCTGG ACCGGGGGTCAGAGCAGACGCATAGTGTCCAGGCATGCTGG < 41bp 0.830335689462459 0.509949648188332 0.50013334 0.09419721 prediction 0.640772082548254 Functional Loss - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167086595 chr1:167086597 stopgain 0.675 0 23 hm5C_associated_SNPs_51998 0 0 0 0 1 DUSP27 chr1:167086565 3'AG 167086565 Downstream 33bp
chr15 89198669 89198669 1 + G T LUAD 89198666 + 89198646 89198686 41 AACAGCCTGCTTGGACACAGCTCGGTGGAAGATGCGAGGGC AACAGCCTGCTTGGACACAGCTCTGTGGAAGATGCGAGGGC < 41bp 0.820383276587749 0.456884645191504 0.21360174 0.11574307 prediction 0.640766553175498 Functional Loss - ISG20 ENSG00000172183 CDS Human protein_coding chr15:89198666 chr15:89198669 synonymous SNV . 0 24 hm5C_associated_SNPs_51999 0 0 1 0 1 ISG20 chr15:89198646 3'AG 89198646 Downstream 24bp
chr19 4651902 4651902 1 + G T UCEC 4651899 + 4651879 4651919 41 GCCATGGACACCTTCAGCACCAAGAGCCTGGCTCTGCAGGC GCCATGGACACCTTCAGCACCAATAGCCTGGCTCTGCAGGC < 41bp 0.866395329028248 0.546042426372128 0.19829667 0.040554613 prediction 0.640705805312241 Functional Loss - TNFAIP8L1 ENSG00000185361 CDS Human protein_coding chr19:4651899 chr19:4651902 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_52002 0 0 1 0 1 TNFAIP8L1 chr19:4651879 3'AG 4651879 Downstream 24bp
chr9 139815618 139815618 1 + G T SARC 139815615 + 139815595 139815635 41 TGGAAGATCTCAGACTTCGCCAGGAAGCGCCAGGAAGCTGT TGGAAGATCTCAGACTTCGCCAGTAAGCGCCAGGAAGCTGT < 41bp 0.873042749734729 0.552703692952935 0.87170124 0.26254612 prediction 0.640678113563589 Functional Loss - TRAF2 ENSG00000127191 CDS Human protein_coding chr9:139815615 chr9:139815618 nonsynonymous SNV 0.909 3 24 hm5C_associated_SNPs_52003 0 0 1 0 1 TRAF2 chr9:139815667 5'GT 139815667 Upstream 50bp
chr7 66483040 66483040 1 + G T UCEC 66483037 + 66483017 66483057 41 AAGTCCTGTGGCGGCCACTGCAAGAAAGGCAAATGTGAATC AAGTCCTGTGGCGGCCACTGCAATAAAGGCAAATGTGAATC < 41bp 0.820336944581681 0.459719320389641 0.64018095 0.27289695 prediction 0.640673889163362 Functional Loss - TYW1 ENSG00000198874 CDS Human protein_coding chr7:66483037 chr7:66483040 nonsynonymous SNV 0.812 0 24 hm5C_associated_SNPs_52004 0 0 0 2 1 TYW1 chr7:66483130 5'GT 66483130 Upstream 91bp
chr7 37988620 37988620 1 + G T HNSC 37988617 + 37988597 37988637 41 CTCAGGAGCAGATCACCGTCCAGGAGTGGTCGGACAGAAAG CTCAGGAGCAGATCACCGTCCAGTAGTGGTCGGACAGAAAG < 41bp 0.859433180923863 0.539099375874218 0.8573081 0.5043784 prediction 0.640667610099292 Functional Loss - EPDR1 ENSG00000086289 CDS Human protein_coding chr7:37988617 chr7:37988620 stopgain 0.984 1 24 hm5C_associated_SNPs_52005 0 0 1 0 1 EPDR1 chr7:37988650 5'GT 37988650 Upstream 31bp
chr15 42113112 42113112 1 + G T LUAD 42113109 + 42113089 42113129 41 AAGAGGGCGCTGGGTTCAGCCAGGTGTGGAACTGAGCGTTA AAGAGGGCGCTGGGTTCAGCCAGTTGTGGAACTGAGCGTTA < 41bp 0.820324837808975 0.457164973311114 0.8886164 0.44733757 prediction 0.640649675617949 Functional Loss - MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42113109 chr15:42113112 nonsynonymous SNV 0.972 2 24 hm5C_associated_SNPs_52006 0 0 1 0 1 MAPKBP1 chr15:42113030 3'AG 42113030 Downstream 83bp
chr19 17000053 17000053 1 + G T SARC 17000050 + 17000030 17000070 41 GGTGCTGGGGTTCAGCCTGTCTGGCGGCACCCAGACCCCCA GGTGCTGGGGTTCAGCCTGTCTGTCGGCACCCAGACCCCCA < 41bp 0.820283969784877 0.471685242417076 0.45706272 0.11243084 prediction 0.640567939569753 Functional Loss - F2RL3 ENSG00000127533 CDS Human protein_coding chr19:17000050 chr19:17000053 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_52009 0 0 0 0 1 F2RL3 chr19:17000109 5'GT 17000109 Upstream 57bp
chr15 58834784 58834784 1 + G T LUAD 58834781 + 58834761 58834801 41 TTCACCTAATTGGGTACAGCCTGGGTGCACACGTGTCAGGA TTCACCTAATTGGGTACAGCCTGTGTGCACACGTGTCAGGA < 41bp 0.820278366627181 0.452109342108018 0.7263435 0.0852429 prediction 0.640556733254362 Functional Loss - LIPC ENSG00000166035 CDS Human protein_coding chr15:58834781 chr15:58834784 nonsynonymous SNV 0.865 5 24 hm5C_associated_SNPs_52011 0 0 1 0 2 LIPC chr15:58834733 3'AG 58834733 Downstream 52bp
chr15 58834784 58834784 1 + G T LUAD 58834781 + 58834761 58834801 41 TTCACCTAATTGGGTACAGCCTGGGTGCACACGTGTCAGGA TTCACCTAATTGGGTACAGCCTGTGTGCACACGTGTCAGGA < 41bp 0.820278366627181 0.452109342108018 0.7263435 0.0852429 prediction 0.640556733254362 Functional Loss - LIPC ENSG00000166035 CDS Human protein_coding chr15:58834781 chr15:58834784 nonsynonymous SNV 0.865 5 24 hm5C_associated_SNPs_52011 0 0 1 0 2 LIPC chr15:58834850 5'GT 58834850 Upstream 67bp
chr19 49133765 49133765 1 + G T ESCA 49133762 + 49133742 49133782 41 GACGACAGCCCGGAGCTGCCCACGGGCTGCAGCCAGTATGC GACGACAGCCCGGAGCTGCCCACTGGCTGCAGCCAGTATGC < 41bp 0.869715236768243 0.549443368449367 0.7478599 0.25856394 prediction 0.640543736637752 Functional Loss - DBP;SPHK2 ENSG00000063176 CDS Human protein_coding chr19:49133762 chr19:49133765 nonsynonymous SNV 0.047 1 24 hm5C_associated_SNPs_52012 0 0 0 0 1 DBP;SPHK2 chr19:49133691 3'AG 49133691 Downstream 75bp
chr7 129394914 129394914 1 + G T STAD 129394911 + 129394891 129394931 41 CTGTGGTGACCAGCCTCGCCCAGGGCAACGGACCAGTGCAG CTGTGGTGACCAGCCTCGCCCAGTGCAACGGACCAGTGCAG < 41bp 0.82023626190821 0.460865080115113 0.8847393 0.32915792 prediction 0.640472523816421 Functional Loss - NRF1 ENSG00000106459 CDS Human protein_coding chr7:129394911 chr7:129394914 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52014 0 0 1 0 1 NRF1 chr7:129394858 3'AG 129394858 Downstream 57bp
chr15 85523914 85523914 1 + G T rs115640954 85523911 + 85523891 85523931 41 GGGGGAGGAGCCCCAGCCACCAAGAAGTTAAGTGACTGGCC GGGGGAGGAGCCCCAGCCACCAATAAGTTAAGTGACTGGCC < 41bp 0.842579002094651 0.522371451154831 0.87700444 0.6809657 prediction 0.640415101879641 Functional Loss - PDE8A ENSG00000073417 UTR5 Human protein_coding chr15:85523911 chr15:85523914 . . 0 24 hm5C_associated_SNPs_52020 0 0 1 0 1 PDE8A chr15:85523916 5'GT 85523916 Upstream 3bp
chr1 94064498 94064498 1 + A C rs531179382 94064494 + 94064474 94064514 41 CCAAAAAGAGCTGGCCTTGGCTGGAAGGTTCTGGCTAGGAG CCAAAAAGAGCTGGCCTTGGCTGGCAGGTTCTGGCTAGGAG < 41bp 0.826118671667323 0.505914546655024 0.2557215 0.2671238 prediction 0.640408250024598 Functional Loss - LOC100129046 ENSG00000224093 ncRNA_exonic Human antisense chr1:94064494 chr1:94064498 . . 0 25 hm5C_associated_SNPs_52021 0 0 0 0 2 LOC100129046 chr1:94064474 3'AG 94064474 Downstream 25bp
chr1 94064498 94064498 1 + A C rs531179382 94064494 + 94064474 94064514 41 CCAAAAAGAGCTGGCCTTGGCTGGAAGGTTCTGGCTAGGAG CCAAAAAGAGCTGGCCTTGGCTGGCAGGTTCTGGCTAGGAG < 41bp 0.826118671667323 0.505914546655024 0.2557215 0.2671238 prediction 0.640408250024598 Functional Loss - LOC100129046 ENSG00000224093 ncRNA_exonic Human antisense chr1:94064494 chr1:94064498 . . 0 25 hm5C_associated_SNPs_52021 0 0 0 0 2 LOC100129046 chr1:94064547 5'GT 94064547 Upstream 50bp
chr16 21726376 21726376 1 + G T LUAD 21726374 + 21726354 21726394 41 GTCAGCACCCAGGCCTTCTGCAGCATGAAACGCAAGGACAT GTCAGCACCCAGGCCTTCTGCATCATGAAACGCAAGGACAT < 41bp 0.823906639911868 0.503734043403654 0.4758305 0.19419491 prediction 0.640345193016427 Functional Loss - OTOA ENSG00000155719 CDS Human protein_coding chr16:21726374 chr16:21726376 nonsynonymous SNV 0.882 0 23 hm5C_associated_SNPs_52024 0 0 0 0 2 OTOA chr16:21726306 3'AG 21726306 Downstream 71bp
chr16 21726376 21726376 1 + G T LUAD 21726374 + 21726354 21726394 41 GTCAGCACCCAGGCCTTCTGCAGCATGAAACGCAAGGACAT GTCAGCACCCAGGCCTTCTGCATCATGAAACGCAAGGACAT < 41bp 0.823906639911868 0.503734043403654 0.4758305 0.19419491 prediction 0.640345193016427 Functional Loss - OTOA ENSG00000155719 CDS Human protein_coding chr16:21726374 chr16:21726376 nonsynonymous SNV 0.882 0 23 hm5C_associated_SNPs_52024 0 0 0 0 2 OTOA chr16:21726473 5'GT 21726473 Upstream 98bp
chr12 75804385 75804385 1 + A C STAD 75804381 + 75804361 75804401 41 TTTACTGCAAGTATTGCTATCAGAAGTTGGCATGCAGAGAA TTTACTGCAAGTATTGCTATCAGACGTTGGCATGCAGAGAA < 41bp 0.820155094076422 0.463516151923739 0.8633685 0.57137084 prediction 0.640310188152844 Functional Loss - GLIPR1L2 ENSG00000180481 CDS Human protein_coding chr12:75804381 chr12:75804385 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_52025 0 0 0 0 1 GLIPR1L2 chr12:75804459 5'GT 75804459 Upstream 75bp
chr2 44073344 44073344 1 + G T UCEC 44073341 + 44073321 44073361 41 TTTGAGCAGCTGGCTCAGTTCAAGATGCCCTGGACATCTCC TTTGAGCAGCTGGCTCAGTTCAATATGCCCTGGACATCTCC < 41bp 0.8753273849747 0.555256029841338 0.46005845 0.14437285 prediction 0.640142710266723 Functional Loss - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44073341 chr2:44073344 nonsynonymous SNV 0.978 3 24 hm5C_associated_SNPs_52030 0 0 0 0 1 ABCG8 chr2:44073294 3'AG 44073294 Downstream 51bp
chr13 88328487 88328487 1 + G T LUAD 88328484 + 88328464 88328504 41 ACTTGGACGAGGTATCCAAGCAGGAACTTTGCCCAAGGAGA ACTTGGACGAGGTATCCAAGCAGTAACTTTGCCCAAGGAGA < 41bp 0.868819758110642 0.548771516647504 0.81566226 0.32854354 prediction 0.640096482926277 Functional Loss - SLITRK5 ENSG00000165300 CDS Human protein_coding chr13:88328484 chr13:88328487 stopgain 1.000 1 24 hm5C_associated_SNPs_52034 0 0 1 0 1 SLITRK5 chr13:88328462 3'AG 88328462 Downstream 26bp
chr11 65714655 65714655 1 + G T LUSC 65714653 + 65714633 65714673 41 GAGAGCATCGCCACAGATGTCCGGGCTGTGCTTCAGCCAAG GAGAGCATCGCCACAGATGTCCTGGCTGTGCTTCAGCCAAG < 41bp 0.820014059186066 0.491480378467526 0.90224457 0.39229214 prediction 0.640028118372133 Functional Loss - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65714653 chr11:65714655 unknown 0.012 0 23 hm5C_associated_SNPs_52036 0 0 0 0 1 TSGA10IP chr11:65714581 3'AG 65714581 Downstream 75bp
chr19 58549479 58549479 1 + G T LUAD 58549477 + 58549457 58549497 41 CAGTTCCTGGGCGCGCTGCCCAGCAAGATGCGGACCTGGGT CAGTTCCTGGGCGCGCTGCCCATCAAGATGCGGACCTGGGT < 41bp 0.819985340151121 0.494139254616224 0.18948647 0.017899394 prediction 0.639970680302243 Functional Loss - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58549477 chr19:58549479 nonsynonymous SNV 0.007 0 23 hm5C_associated_SNPs_52039 0 0 0 0 1 ZSCAN1 chr19:58549574 5'GT 58549574 Upstream 96bp
chr9 120474738 120474738 1 + G T LUSC 120474735 + 120474715 120474755 41 CCTCTCTACCTTAATATTGACAGGAAACCCCATCCAGAGTT CCTCTCTACCTTAATATTGACAGTAAACCCCATCCAGAGTT < 41bp 0.819969381436545 0.471832410252865 0.84579617 0.1184625 prediction 0.63993876287309 Functional Loss - TLR4 ENSG00000136869 CDS Human protein_coding chr9:120474735 chr9:120474738 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_52040 0 0 0 0 1 TLR4 chr9:120474667 3'AG 120474667 Downstream 72bp
chr3 128987831 128987831 1 + G T LUSC 128987828 + 128987808 128987848 41 AGAAAGTGGCAGCTACCAGGCAGGAGATCTTCCAGGGTGAG AGAAAGTGGCAGCTACCAGGCAGTAGATCTTCCAGGGTGAG < 41bp 0.876258063488379 0.556305008013016 0.41234168 0.1350989 prediction 0.639906110950725 Functional Loss - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128987828 chr3:128987831 stopgain 1.000 1 24 hm5C_associated_SNPs_52041 0 0 1 0 1 COPG1 chr3:128987775 3'AG 128987775 Downstream 57bp
chr6 3127546 3127546 1 + G T LUAD 3127543 + 3127523 3127563 41 AAGCTCTTCACGGTGGTCGCCTGGGATCCTCGAGGCTATGG AAGCTCTTCACGGTGGTCGCCTGTGATCCTCGAGGCTATGG < 41bp 0.819941673823808 0.458553503469237 0.3899346 0.019809932 prediction 0.639883347647615 Functional Loss - BPHL ENSG00000137274 CDS Human protein_coding chr6:3127543 chr6:3127546 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_52042 0 0 1 0 2 BPHL chr6:3127476 3'AG 3127476 Downstream 71bp
chr6 3127546 3127546 1 + G T LUAD 3127543 + 3127523 3127563 41 AAGCTCTTCACGGTGGTCGCCTGGGATCCTCGAGGCTATGG AAGCTCTTCACGGTGGTCGCCTGTGATCCTCGAGGCTATGG < 41bp 0.819941673823808 0.458553503469237 0.3899346 0.019809932 prediction 0.639883347647615 Functional Loss - BPHL ENSG00000137274 CDS Human protein_coding chr6:3127543 chr6:3127546 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_52042 0 0 1 0 2 BPHL chr6:3127642 5'GT 3127642 Upstream 97bp
chr2 44547380 44547380 1 + G T COAD 44547377 + 44547357 44547397 41 GATCGGCTTTGAAGTTATATCAAGATTTAAGTCTACTTCAT GATCGGCTTTGAAGTTATATCAATATTTAAGTCTACTTCAT < 41bp 0.819938708016147 0.481420894587802 0.5016601 0.118624896 prediction 0.639877416032295 Functional Loss - SLC3A1 ENSG00000138079 CDS Human protein_coding chr2:44547377 chr2:44547380 nonsynonymous SNV 0.944 2 24 hm5C_associated_SNPs_52043 0 0 0 0 1 SLC3A1 chr2:44547338 3'AG 44547338 Downstream 43bp
chr19 33597678 33597678 1 + G T COAD 33597675 + 33597655 33597695 41 CCCATGGTGGCCGCCACCTCCGAGAACTCACACTTACTGCA CCCATGGTGGCCGCCACCTCCGATAACTCACACTTACTGCA < 41bp 0.819928421094465 0.448199071151829 0.43513545 0.058654726 prediction 0.63985684218893 Functional Loss - GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33597675 chr19:33597678 nonsynonymous SNV 0.018 1 24 hm5C_associated_SNPs_52045 0 0 1 0 1 GPATCH1 chr19:33597601 3'AG 33597601 Downstream 78bp
chr2 37571895 37571895 1 + G T LUSC 37571892 + 37571872 37571912 41 GAGATGGCAGGCGGAAGACACCGGCGCGTCGTGGGCACCCT GAGATGGCAGGCGGAAGACACCGTCGCGTCGTGGGCACCCT < 41bp 0.819903756018796 0.461058846057719 0.84907854 0.17312142 prediction 0.639807512037592 Functional Loss - QPCT ENSG00000115828 CDS Human protein_coding chr2:37571892 chr2:37571895 synonymous SNV . 0 24 hm5C_associated_SNPs_52046 0 0 0 0 1 QPCT chr2:37571994 5'GT 37571994 Upstream 100bp
chr15 43890409 43890409 1 + G T UCEC 43890406 + 43890386 43890426 41 CTCAGGTGGAGAGACTTATCCAAGAACGTGGCTGGGAGTTC CTCAGGTGGAGAGACTTATCCAATAACGTGGCTGGGAGTTC < 41bp 0.819896577459962 0.480872864705051 0.78782845 0.24736759 prediction 0.639793154919924 Functional Loss - CKMT1B ENSG00000237289 CDS Human protein_coding chr15:43890406 chr15:43890409 stopgain 0.962 1 24 hm5C_associated_SNPs_52047 0 0 0 0 1 CKMT1B chr15:43890391 3'AG 43890391 Downstream 19bp
chr17 26688278 26688278 1 + G T rs76813129 26688275 + 26688255 26688295 41 GCGAGCTGGGAGAACTGTAACTGGTGCTTCATCATCAAGTC GCGAGCTGGGAGAACTGTAACTGTTGCTTCATCATCAAGTC < 41bp 0.85643059595304 0.536534674793921 0.16892219 0.10728374 prediction 0.639791842318237 Functional Loss - TMEM199 ENSG00000258924 ncRNA_intronic Human protein_coding chr17:26688275 chr17:26688278 . . 0 24 hm5C_associated_SNPs_52048 0 0 1 4 1 TMEM199 chr17:26688179 3'AG 26688179 Downstream 100bp
chr11 64005048 64005048 1 + A C SKCM 64005044 + 64005024 64005064 41 CACCACCAGCGCCCTGACCCCCGGACCTGCCGCTGCCGCTG CACCACCAGCGCCCTGACCCCCGGCCCTGCCGCTGCCGCTG < 41bp 0.819893989640012 0.45214742715935 0.8580203 0.8778529 prediction 0.639787979280025 Functional Loss - VEGFB ENSG00000173511 CDS Human protein_coding chr11:64005044 chr11:64005048 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_52049 0 0 1 0 2 VEGFB chr11:64004993 3'AG 64004993 Downstream 56bp
chr11 64005048 64005048 1 + A C SKCM 64005044 + 64005024 64005064 41 CACCACCAGCGCCCTGACCCCCGGACCTGCCGCTGCCGCTG CACCACCAGCGCCCTGACCCCCGGCCCTGCCGCTGCCGCTG < 41bp 0.819893989640012 0.45214742715935 0.8580203 0.8778529 prediction 0.639787979280025 Functional Loss - VEGFB ENSG00000173511 CDS Human protein_coding chr11:64005044 chr11:64005048 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_52049 0 0 1 0 2 VEGFB chr11:64005127 5'GT 64005127 Upstream 80bp
chr3 44935153 44935153 1 + G T UCEC 44935151 + 44935131 44935171 41 TGCCATTACGTGGGGGCTGCCAGAAGTATCAAATGCAAACC TGCCATTACGTGGGGGCTGCCATAAGTATCAAATGCAAACC < 41bp 0.819884703268921 0.495352419942246 0.8067547 0.30236995 prediction 0.639769406537843 Functional Loss - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44935151 chr3:44935153 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_52052 0 0 0 0 2 TGM4 chr3:44935069 3'AG 44935069 Downstream 85bp
chr3 44935153 44935153 1 + G T UCEC 44935151 + 44935131 44935171 41 TGCCATTACGTGGGGGCTGCCAGAAGTATCAAATGCAAACC TGCCATTACGTGGGGGCTGCCATAAGTATCAAATGCAAACC < 41bp 0.819884703268921 0.495352419942246 0.8067547 0.30236995 prediction 0.639769406537843 Functional Loss - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44935151 chr3:44935153 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_52052 0 0 0 0 2 TGM4 chr3:44935187 5'GT 44935187 Upstream 35bp
chr12 644345 644345 1 + G T LUSC 644342 + 644322 644362 41 CCTTCCACAGGGTACGGCAGCTGGAGAGAACTGGCCAAGGC CCTTCCACAGGGTACGGCAGCTGTAGAGAACTGGCCAAGGC < 41bp 0.869714641040171 0.549842758762514 0.7547892 0.30489618 prediction 0.639743764555314 Functional Loss - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:644342 chr12:644345 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_52054 0 0 0 0 1 B4GALNT3 chr12:644435 5'GT 644435 Upstream 91bp
chr1 228246746 228246746 1 + G T COAD 228246743 + 228246723 228246763 41 CACGGGCTGTCGGGCAGCTGCGAGGTGAAGACATGCTGGTG CACGGGCTGTCGGGCAGCTGCGATGTGAAGACATGCTGGTG < 41bp 0.819861399076063 0.451990407688093 0.91271555 0.5143482 prediction 0.639722798152127 Functional Loss - WNT3A ENSG00000154342 CDS Human protein_coding chr1:228246743 chr1:228246746 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_52056 0 0 0 0 1 WNT3A chr1:228246687 3'AG 228246687 Downstream 60bp
chr13 24890228 24890228 1 + A C rs4275724 24890224 + 24890204 24890244 41 CACCTGCAGGCAAGGGCACCCTGGAATCCCTGGGAACCCCG CACCTGCAGGCAAGGGCACCCTGGCATCCCTGGGAACCCCG < 41bp 0.88634297733021 0.566486743059964 0.38087693 0.09179425 prediction 0.639712468540493 Functional Loss - C1QTNF9 ENSG00000240654 CDS Human protein_coding chr13:24890224 chr13:24890228 synonymous SNV . 0 25 hm5C_associated_SNPs_52057 0 0 0 0 1 C1QTNF9 chr13:24890307 5'GT 24890307 Upstream 80bp
chr1 183195900 183195900 1 + G T LUAD 183195897 + 183195877 183195917 41 GTCTCTGGAGCCCCAGCACCCTGGGTTGAACAGTGTATATG GTCTCTGGAGCCCCAGCACCCTGTGTTGAACAGTGTATATG < 41bp 0.819853750922352 0.445870402126315 0.7959038 0.22809097 prediction 0.639707501844705 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183195897 chr1:183195900 nonsynonymous SNV 0.986 4 24 hm5C_associated_SNPs_52058 0 0 0 0 1 LAMC2 chr1:183195833 3'AG 183195833 Downstream 68bp
chr1 183195899 183195899 1 + G T LUAD 183195897 + 183195877 183195917 41 GTCTCTGGAGCCCCAGCACCCTGGGTTGAACAGTGTATATG GTCTCTGGAGCCCCAGCACCCTTGGTTGAACAGTGTATATG < 41bp 0.819853750922352 0.497727381031007 0.7959038 0.13764635 prediction 0.639707501844705 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183195897 chr1:183195899 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_52059 0 0 0 0 1 LAMC2 chr1:183195833 3'AG 183195833 Downstream 67bp
chr1 110168957 110168957 1 + G T OV 110168954 + 110168934 110168974 41 CCTGCAGGCTCTACAAGGAACAGGGTGAGGGGCAGGGTGAC CCTGCAGGCTCTACAAGGAACAGTGTGAGGGGCAGGGTGAC < 41bp 0.81982276256806 0.445508155912758 0.8599204 0.3951522 prediction 0.63964552513612 Functional Loss - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110168954 chr1:110168957 nonsynonymous SNV 0.951 2 24 hm5C_associated_SNPs_52061 0 0 1 2 2 AMPD2 chr1:110168941 3'AG 110168941 Downstream 17bp
chr1 110168957 110168957 1 + G T OV 110168954 + 110168934 110168974 41 CCTGCAGGCTCTACAAGGAACAGGGTGAGGGGCAGGGTGAC CCTGCAGGCTCTACAAGGAACAGTGTGAGGGGCAGGGTGAC < 41bp 0.81982276256806 0.445508155912758 0.8599204 0.3951522 prediction 0.63964552513612 Functional Loss - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110168954 chr1:110168957 nonsynonymous SNV 0.951 2 24 hm5C_associated_SNPs_52061 0 0 1 2 2 AMPD2 chr1:110169049 5'GT 110169049 Upstream 93bp
chr18 28991326 28991326 1 + G T LUAD 28991323 + 28991303 28991343 41 CGCAGGAGCCTCAGGGGCCGCAAGGAAGAGGAGCTCTACCA CGCAGGAGCCTCAGGGGCCGCAATGAAGAGGAGCTCTACCA < 41bp 0.875705951159939 0.555889500183845 0.809696 0.4250251 prediction 0.639632901952188 Functional Loss - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28991323 chr18:28991326 nonsynonymous SNV 0.172 2 24 hm5C_associated_SNPs_52062 0 0 0 0 1 DSG4 chr18:28991411 5'GT 28991411 Upstream 86bp
chr10 26994282 26994282 1 + G T LUSC 26994279 + 26994259 26994299 41 AATACACCGATCCTTTCAAACTCGGTTGGAGAGACTTGAAA AATACACCGATCCTTTCAAACTCTGTTGGAGAGACTTGAAA < 41bp 0.819804788612456 0.469239182478868 0.28374594 0.09274995 prediction 0.639609577224911 Functional Loss - PDSS1 ENSG00000148459 CDS Human protein_coding chr10:26994279 chr10:26994282 nonsynonymous SNV 0.987 3 24 hm5C_associated_SNPs_52063 0 0 0 0 2 PDSS1 chr10:26994215 3'AG 26994215 Downstream 68bp
chr10 26994282 26994282 1 + G T LUSC 26994279 + 26994259 26994299 41 AATACACCGATCCTTTCAAACTCGGTTGGAGAGACTTGAAA AATACACCGATCCTTTCAAACTCTGTTGGAGAGACTTGAAA < 41bp 0.819804788612456 0.469239182478868 0.28374594 0.09274995 prediction 0.639609577224911 Functional Loss - PDSS1 ENSG00000148459 CDS Human protein_coding chr10:26994279 chr10:26994282 nonsynonymous SNV 0.987 3 24 hm5C_associated_SNPs_52063 0 0 0 0 2 PDSS1 chr10:26994323 5'GT 26994323 Upstream 42bp
chr17 79990299 79990299 1 + G T CESC 79990296 + 79990276 79990316 41 ACATGCTTGCTGATCAGCTACACGACCAACGCCTTCCCCGG ACATGCTTGCTGATCAGCTACACTACCAACGCCTTCCCCGG < 41bp 0.870798109304181 0.550997471666678 0.19146207 0.15127212 prediction 0.639601275275006 Functional Loss - RAC3 ENSG00000169750 CDS Human protein_coding chr17:79990296 chr17:79990299 synonymous SNV . 0 24 hm5C_associated_SNPs_52064 0 0 1 0 2 RAC3 chr17:79990263 3'AG 79990263 Downstream 37bp
chr17 79990299 79990299 1 + G T CESC 79990296 + 79990276 79990316 41 ACATGCTTGCTGATCAGCTACACGACCAACGCCTTCCCCGG ACATGCTTGCTGATCAGCTACACTACCAACGCCTTCCCCGG < 41bp 0.870798109304181 0.550997471666678 0.19146207 0.15127212 prediction 0.639601275275006 Functional Loss - RAC3 ENSG00000169750 CDS Human protein_coding chr17:79990296 chr17:79990299 synonymous SNV . 0 24 hm5C_associated_SNPs_52064 0 0 1 0 2 RAC3 chr17:79990334 5'GT 79990334 Upstream 36bp
chr19 40172674 40172674 1 + G T GBM 40172671 + 40172651 40172691 41 CTGCAGGTGGATTTCCATACCGAGATGAAGGAAGACTCAGA CTGCAGGTGGATTTCCATACCGATATGAAGGAAGACTCAGA < 41bp 0.837272886836804 0.517476553553576 0.5663133 0.17504638 prediction 0.639592666566455 Functional Loss - LGALS17A ENSG00000226025 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:40172671 chr19:40172674 . . 0 24 hm5C_associated_SNPs_52065 0 0 0 1 1 LGALS17A chr19:40172638 3'AG 40172638 Downstream 37bp
chr16 57736008 57736008 1 + G T ACC 57736005 + 57735985 57736025 41 CCTGTGCCACATGGACCTGACGCGGGAGGTGTGCCCACTCA CCTGTGCCACATGGACCTGACGCTGGAGGTGTGCCCACTCA < 41bp 0.880782007161897 0.560989054762759 0.413571 0.16386893 prediction 0.639585904798277 Functional Loss - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57736005 chr16:57736008 nonsynonymous SNV 0.661 0 24 hm5C_associated_SNPs_52066 0 0 0 0 1 DRC7 chr16:57736042 5'GT 57736042 Upstream 35bp
chr13 41379289 41379289 1 - C A BLCA 41379291 - 41379271 41379311 41 GAGCACCAGTGCAGCAAAGGCAGAGGCGAAGGAACCGGCGG GAGCACCAGTGCAGCAAAGGCATAGGCGAAGGAACCGGCGG < 41bp 0.81978863953951 0.493995770143809 0.8883937 0.42188013 prediction 0.639577279079019 Functional Loss - SLC25A15 ENSG00000102743 CDS Human protein_coding chr13:41379291 chr13:41379289 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_52067 0 0 0 0 1 SLC25A15 chr13:41379338 3'AG 41379338 Downstream 50bp
chr1 104163185 104163185 1 + G T LUAD 104163182 + 104163162 104163202 41 ATTTCTACTAGGTAATTGATCTGGGTGGTGAGCCAATTAAA ATTTCTACTAGGTAATTGATCTGTGTGGTGAGCCAATTAAA < 41bp 0.819782332426731 0.468288166795614 0.8649635 0.08079827 prediction 0.639564664853462 Functional Loss - AMY2A ENSG00000243480 CDS Human protein_coding chr1:104163182 chr1:104163185 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_52069 0 0 0 0 1 AMY2A chr1:104163173 3'AG 104163173 Downstream 13bp
chr10 86017689 86017689 1 + G T LUSC 86017687 + 86017667 86017707 41 GCAAGGACGCTGCTGCTCGGCTGGGGCCCCTATGCCATCCT GCAAGGACGCTGCTGCTCGGCTTGGGCCCCTATGCCATCCT < 41bp 0.82117023029016 0.501390461052093 0.7121328 0.093548626 prediction 0.639559538476134 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86017687 chr10:86017689 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_52071 0 0 0 0 2 RGR chr10:86017649 3'AG 86017649 Downstream 41bp
chr10 86017689 86017689 1 + G T LUSC 86017687 + 86017667 86017707 41 GCAAGGACGCTGCTGCTCGGCTGGGGCCCCTATGCCATCCT GCAAGGACGCTGCTGCTCGGCTTGGGCCCCTATGCCATCCT < 41bp 0.82117023029016 0.501390461052093 0.7121328 0.093548626 prediction 0.639559538476134 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86017687 chr10:86017689 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_52071 0 0 0 0 2 RGR chr10:86017762 5'GT 86017762 Upstream 74bp
chr13 114290334 114290334 1 + G T LUAD 114290332 + 114290312 114290352 41 GGTGCAGAGAAACCGGCATGCGGAGCAGCAGGCCAGCCGGC GGTGCAGAGAAACCGGCATGCGTAGCAGCAGGCCAGCCGGC < 41bp 0.83664110965439 0.516884021925608 0.87732834 0.40697747 prediction 0.639514175457565 Functional Loss - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114290332 chr13:114290334 stopgain 0.826 1 23 hm5C_associated_SNPs_52072 0 0 1 0 1 TFDP1 chr13:114290292 3'AG 114290292 Downstream 43bp
chr5 23522919 23522919 1 + G T ESCA 23522917 + 23522897 23522937 41 ATGAGGCATCTGATCTGCCGCTGGGTCTGCACTTTGGCCCT ATGAGGCATCTGATCTGCCGCTTGGTCTGCACTTTGGCCCT < 41bp 0.828087634794435 0.508336667174119 0.51111054 0.056384772 prediction 0.639501935240632 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23522917 chr5:23522919 synonymous SNV . 0 23 hm5C_associated_SNPs_52073 0 0 0 0 1 PRDM9 chr5:23522994 5'GT 23522994 Upstream 76bp
chr11 812565 812565 1 + G T HNSC 812562 + 812542 812582 41 CAAGCTTGCCAGTGTACCTGCTGGTGGGGCTGTAGCCGTCT CAAGCTTGCCAGTGTACCTGCTGTTGGGGCTGTAGCCGTCT < 41bp 0.819734739714579 0.446989917759243 0.33916712 0.22682193 prediction 0.639469479429158 Functional Loss - RPLP2 ENSG00000177600 CDS Human protein_coding chr11:812562 chr11:812565 nonsynonymous SNV 0.897 4 24 hm5C_associated_SNPs_52076 0 0 1 0 2 RPLP2 chr11:812535 3'AG 812535 Downstream 31bp
chr11 812565 812565 1 + G T HNSC 812562 + 812542 812582 41 CAAGCTTGCCAGTGTACCTGCTGGTGGGGCTGTAGCCGTCT CAAGCTTGCCAGTGTACCTGCTGTTGGGGCTGTAGCCGTCT < 41bp 0.819734739714579 0.446989917759243 0.33916712 0.22682193 prediction 0.639469479429158 Functional Loss - RPLP2 ENSG00000177600 CDS Human protein_coding chr11:812562 chr11:812565 nonsynonymous SNV 0.897 4 24 hm5C_associated_SNPs_52076 0 0 1 0 2 RPLP2 chr11:812633 5'GT 812633 Upstream 69bp
chr11 47260393 47260393 1 + G T UCEC 47260390 + 47260370 47260410 41 GAGCCAGGAGGAAGCCAGGACACGGAAGTGAGAGACACTAA GAGCCAGGAGGAAGCCAGGACACTGAAGTGAGAGACACTAA < 41bp 0.819700937401492 0.467180457558118 0.39534828 0.2772029 prediction 0.639401874802984 Functional Loss - DDB2 ENSG00000134574 CDS Human protein_coding chr11:47260390 chr11:47260393 nonsynonymous SNV 0.117 0 24 hm5C_associated_SNPs_52078 0 0 1 0 1 DDB2 chr11:47260351 3'AG 47260351 Downstream 43bp
chr3 100148683 100148683 1 + A C rs201658663 100148679 + 100148659 100148699 41 ATCAGAGAGGACTCCGGGAACGCCACCGACTGCAAGCCACC ATCAGAGAGGACTCCGGGAACGCCCCCGACTGCAAGCCACC < 41bp 0.896354131374523 0.576666763726573 0.2773239 0.098659664 prediction 0.6393747352959 Functional Loss - LNP1 ENSG00000206535 CDS Human protein_coding chr3:100148679 chr3:100148683 nonsynonymous SNV 0.171 1 25 hm5C_associated_SNPs_52080 0 0 0 0 1 LNP1 chr3:100148729 5'GT 100148729 Upstream 47bp
chrX 153062964 153062964 1 + G T LUAD 153062961 + 153062941 153062981 41 GAAAACAATTCCCTGTCACTCGAGGCCAGGATGTGGGGCGT GAAAACAATTCCCTGTCACTCGATGCCAGGATGTGGGGCGT < 41bp 0.819646328901039 0.452202373353852 0.9449369 0.92502904 prediction 0.639292657802077 Functional Loss - SSR4 ENSG00000180879 CDS Human protein_coding chrX:153062961 chrX:153062964 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_52082 0 0 1 0 2 SSR4 chrX:153062913 3'AG 153062913 Downstream 52bp
chrX 153062964 153062964 1 + G T LUAD 153062961 + 153062941 153062981 41 GAAAACAATTCCCTGTCACTCGAGGCCAGGATGTGGGGCGT GAAAACAATTCCCTGTCACTCGATGCCAGGATGTGGGGCGT < 41bp 0.819646328901039 0.452202373353852 0.9449369 0.92502904 prediction 0.639292657802077 Functional Loss - SSR4 ENSG00000180879 CDS Human protein_coding chrX:153062961 chrX:153062964 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_52082 0 0 1 0 2 SSR4 chrX:153062987 5'GT 153062987 Upstream 24bp
chr11 64329535 64329535 1 + G T UCEC 64329533 + 64329513 64329553 41 CAGTTGGCCGTGGCGGGCACCAGCACCATCTTCGCCCCAAC CAGTTGGCCGTGGCGGGCACCATCACCATCTTCGCCCCAAC < 41bp 0.819606338879291 0.490098545798514 0.42878622 0.048393548 prediction 0.639212677758582 Functional Loss - SLC22A11 ENSG00000168065 CDS Human protein_coding chr11:64329533 chr11:64329535 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_52085 0 0 0 0 1 SLC22A11 chr11:64329630 5'GT 64329630 Upstream 96bp
chr8 11629094 11629094 1 + G T COAD 11629092 + 11629072 11629112 41 CTCTGTGGCTCCAGGACACCCAGGTGAGGTAATACTCCTCT CTCTGTGGCTCCAGGACACCCATGTGAGGTAATACTCCTCT < 41bp 0.819594691339101 0.499622049072667 0.8944796 0.41838455 prediction 0.639189382678201 Functional Loss - NEIL2 ENSG00000154328 CDS Human protein_coding chr8:11629092 chr8:11629094 nonsynonymous SNV 0.957 3 23 hm5C_associated_SNPs_52087 0 0 0 0 2 NEIL2 chr8:11629094 5'GT 11629094 Upstream 1bp
chr8 11629094 11629094 1 + G T COAD 11629092 + 11629072 11629112 41 CTCTGTGGCTCCAGGACACCCAGGTGAGGTAATACTCCTCT CTCTGTGGCTCCAGGACACCCATGTGAGGTAATACTCCTCT < 41bp 0.819594691339101 0.499622049072667 0.8944796 0.41838455 prediction 0.639189382678201 Functional Loss - NEIL2 ENSG00000154328 CDS Human protein_coding chr8:11629092 chr8:11629094 nonsynonymous SNV 0.957 3 23 hm5C_associated_SNPs_52087 0 0 0 0 2 NEIL2 chr8:11629099 5'GT 11629099 Upstream 6bp
chr1 16074127 16074127 1 + A C GBM 16074123 + 16074103 16074143 41 GTCCCAGAGTTCGGCCCCCTCTTGACCTGCCTCAGGGAGGA GTCCCAGAGTTCGGCCCCCTCTTGCCCTGCCTCAGGGAGGA < 41bp 0.819594599227878 0.455778604244198 0.5537509 0.33091873 prediction 0.639189198455757 Functional Loss - TMEM82 ENSG00000162460 CDS Human protein_coding chr1:16074123 chr1:16074127 stoploss 0.078 0 25 hm5C_associated_SNPs_52088 0 0 0 0 1 TMEM82 chr1:16074041 3'AG 16074041 Downstream 87bp
chr6 31675844 31675844 1 + G T COAD 31675841 + 31675821 31675861 41 GGGGAGGGGCTTTCTGAGCCCAGGAGCCGAAGACCAAGAAT GGGGAGGGGCTTTCTGAGCCCAGTAGCCGAAGACCAAGAAT < 41bp 0.852936291265709 0.533383762651535 0.8648584 0.31183293 prediction 0.639105057228348 Functional Loss - LY6G6F ENSG00000204424;ENSG00000250641 CDS Human other chr6:31675841 chr6:31675844 nonsynonymous SNV 0.056 2 24 hm5C_associated_SNPs_52089 0 0 0 0 1 LY6G6F chr6:31675911 5'GT 31675911 Upstream 68bp
chr5 14601175 14601175 1 + G T rs116219787 14601172 + 14601152 14601192 41 TGATGTTGGCAGTTTCATTTCTGGTGGCTGCCATCTGCTAC TGATGTTGGCAGTTTCATTTCTGTTGGCTGCCATCTGCTAC < 41bp 0.86763853351354 0.548086368097923 0.28408572 0.1974254 prediction 0.639104330831234 Functional Loss - FAM105A ENSG00000145569 CDS Human protein_coding chr5:14601172 chr5:14601175 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_52090 0 0 1 0 1 FAM105A chr5:14601233 5'GT 14601233 Upstream 59bp
chr22 30069437 30069437 1 + G T UCEC 30069434 + 30069414 30069454 41 GAGCAGAAGGTGCTGGAAGCCGAGGTGCTGGCACTGAAGAT GAGCAGAAGGTGCTGGAAGCCGATGTGCTGGCACTGAAGAT < 41bp 0.819548750857404 0.490815091133638 0.81243825 0.2782038 prediction 0.639097501714807 Functional Loss - NF2 ENSG00000186575 CDS Human protein_coding chr22:30069434 chr22:30069437 nonsynonymous SNV 0.984 2 24 hm5C_associated_SNPs_52091 0 0 1 0 1 NF2 chr22:30069475 5'GT 30069475 Upstream 39bp
chr11 65632076 65632076 1 + A C rs115472389 65632072 + 65632052 65632092 41 AGCACACTGCTGCAGGCTGTCACCAACACTCAGGTGAGCTG AGCACACTGCTGCAGGCTGTCACCCACACTCAGGTGAGCTG < 41bp 0.819533676387769 0.421165526285224 0.078541666 0.060485393 prediction 0.639067352775537 Functional Loss - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65632072 chr11:65632076 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_52092 0 0 1 0 1 MUS81 chr11:65632084 5'GT 65632084 Upstream 9bp
chr17 38133102 38133102 1 + G T LUSC 38133099 + 38133079 38133119 41 CGATGGAACAGAACTTCCTGCTGGATAAAGAGGGTGTTTTC CGATGGAACAGAACTTCCTGCTGTATAAAGAGGGTGTTTTC < 41bp 0.862395282695705 0.542861748595115 0.3230157 0.22404683 prediction 0.63906706820118 Functional Loss - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38133099 chr17:38133102 nonsynonymous SNV 0.887 2 24 hm5C_associated_SNPs_52093 0 0 0 0 1 GSDMA chr17:38133069 3'AG 38133069 Downstream 34bp
chr1 168274299 168274299 1 + A C UCEC 168274295 + 168274275 168274315 41 GGAGTGTGCACAGCAGGAAACTCCAATTACCAGTATGCCGC GGAGTGTGCACAGCAGGAAACTCCCATTACCAGTATGCCGC < 41bp 0.819511412809143 0.405659147714989 0.95368075 0.3296174 prediction 0.639022825618286 Functional Loss - TBX19 ENSG00000143178 CDS Human protein_coding chr1:168274295 chr1:168274299 nonsynonymous SNV 0.703 1 25 hm5C_associated_SNPs_52097 0 0 0 0 1 TBX19 chr1:168274246 3'AG 168274246 Downstream 54bp
chr6 39836641 39836641 1 + G T LUSC 39836638 + 39836618 39836658 41 ACCGAAGTCTGGGCCGGTACCGGGATGAAGTGAATCTGAAA ACCGAAGTCTGGGCCGGTACCGGTATGAAGTGAATCTGAAA < 41bp 0.871067236848567 0.551565429223293 0.923471 0.23130709 prediction 0.639003615250548 Functional Loss - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39836638 chr6:39836641 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_52098 0 0 0 0 2 DAAM2 chr6:39836599 3'AG 39836599 Downstream 43bp
chr6 39836641 39836641 1 + G T LUSC 39836638 + 39836618 39836658 41 ACCGAAGTCTGGGCCGGTACCGGGATGAAGTGAATCTGAAA ACCGAAGTCTGGGCCGGTACCGGTATGAAGTGAATCTGAAA < 41bp 0.871067236848567 0.551565429223293 0.923471 0.23130709 prediction 0.639003615250548 Functional Loss - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39836638 chr6:39836641 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_52098 0 0 0 0 2 DAAM2 chr6:39836709 5'GT 39836709 Upstream 69bp
chr2 207024769 207024769 1 + G T COAD 207024766 + 207024746 207024786 41 CTCAACGATTACCTGGCGGACAAGAGCTACATCGAGGGGTG CTCAACGATTACCTGGCGGACAATAGCTACATCGAGGGGTG < 41bp 0.846099532868668 0.526621627417273 0.7339791 0.4986426 prediction 0.638955810902791 Functional Loss - EEF1B2 ENSG00000114942 CDS Human protein_coding chr2:207024766 chr2:207024769 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_52099 0 0 1 0 2 EEF1B2 chr2:207024683 3'AG 207024683 Downstream 87bp
chr2 207024769 207024769 1 + G T COAD 207024766 + 207024746 207024786 41 CTCAACGATTACCTGGCGGACAAGAGCTACATCGAGGGGTG CTCAACGATTACCTGGCGGACAATAGCTACATCGAGGGGTG < 41bp 0.846099532868668 0.526621627417273 0.7339791 0.4986426 prediction 0.638955810902791 Functional Loss - EEF1B2 ENSG00000114942 CDS Human protein_coding chr2:207024766 chr2:207024769 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_52099 0 0 1 0 2 EEF1B2 chr2:207024783 5'GT 207024783 Upstream 15bp
chr12 100904588 100904588 1 + G T COAD 100904585 + 100904565 100904605 41 CAGAACAAGTGGCAGGTCCTCTGGGACAGAACCTGGAAGTG CAGAACAAGTGGCAGGTCCTCTGTGACAGAACCTGGAAGTG < 41bp 0.860055878901466 0.540582204020645 0.7014774 0.17663437 prediction 0.638947349761641 Functional Loss - NR1H4 ENSG00000012504 CDS Human protein_coding chr12:100904585 chr12:100904588 stopgain 0.956 0 24 hm5C_associated_SNPs_52100 0 0 1 0 1 NR1H4 chr12:100904556 3'AG 100904556 Downstream 33bp
chr1 47583530 47583530 1 + G T HNSC 47583527 + 47583507 47583547 41 CAAGCTGGCTCCAGACCACTCAAGGCCTCCCCAGCCTGTTC CAAGCTGGCTCCAGACCACTCAATGCCTCCCCAGCCTGTTC < 41bp 0.819471663913652 0.449921785418445 0.8287116 0.1622816 prediction 0.638943327827305 Functional Loss - CYP4Z1 ENSG00000186160 CDS Human protein_coding chr1:47583527 chr1:47583530 nonsynonymous SNV 0.028 3 24 hm5C_associated_SNPs_52101 0 0 0 0 1 CYP4Z1 chr1:47583438 3'AG 47583438 Downstream 93bp
chr16 72042682 72042682 1 + A C rs3213422 72042678 + 72042658 72042698 41 AGGAGCATGGCGTGGAGACACCTGAAAGTGAGTCCCGCGAG AGGAGCATGGCGTGGAGACACCTGCAAGTGAGTCCCGCGAG < 41bp 0.819444268779662 0.461145118067076 0.19021833 0.09813237 prediction 0.638888537559323 Functional Loss - DHODH ENSG00000102967 CDS Human protein_coding chr16:72042678 chr16:72042682 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_52102 2 0 1 0 1 DHODH chr16:72042684 5'GT 72042684 Upstream 3bp
chr11 75439123 75439123 1 + G T UCEC 75439121 + 75439101 75439141 41 GCCCAGGAGGCCCTGGATGCCAGGCCTGGATCCTTCACGCT GCCCAGGAGGCCCTGGATGCCATGCCTGGATCCTTCACGCT < 41bp 0.819393680155198 0.497493142746371 0.8868285 0.332924 prediction 0.638787360310396 Functional Loss - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75439121 chr11:75439123 nonsynonymous SNV 0.989 3 23 hm5C_associated_SNPs_52106 0 0 0 0 1 MOGAT2 chr11:75439189 5'GT 75439189 Upstream 67bp
chr3 10206709 10206709 1 + G T SARC 10206707 + 10206687 10206727 41 TGCCGCAACATGGACGCGCTCAGCGAGTGGGACTGGATGGA TGCCGCAACATGGACGCGCTCATCGAGTGGGACTGGATGGA < 41bp 0.819409499159861 0.50002501297138 0.3900029 0.11030522 prediction 0.638768972376961 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10206707 chr3:10206709 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52108 0 0 0 0 1 IRAK2 chr3:10206732 5'GT 10206732 Upstream 24bp
chr2 11750844 11750844 1 + G T HNSC 11750841 + 11750821 11750861 41 CGCCTGCACAGCGCGGTGATCAGGACCTTTGTTCTCGTGCA CGCCTGCACAGCGCGGTGATCAGTACCTTTGTTCTCGTGCA < 41bp 0.819367426532593 0.452149090274486 0.90603006 0.2557996 prediction 0.638734853065187 Functional Loss - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11750841 chr2:11750844 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52110 0 0 1 0 1 GREB1 chr2:11750814 3'AG 11750814 Downstream 31bp
chr20 62641664 62641664 1 + G T SARC 62641662 + 62641642 62641682 41 GCTGTGGAGTGCTGCCCCACCAGCGTGGAGGTGAGTCTGGC GCTGTGGAGTGCTGCCCCACCATCGTGGAGGTGAGTCTGGC < 41bp 0.819343495427427 0.499722052469814 0.6775584 0.38359177 prediction 0.638686990854854 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62641662 chr20:62641664 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_52111 0 0 1 0 1 PRPF6 chr20:62641671 5'GT 62641671 Upstream 8bp
chr11 75431139 75431139 1 + G T LUAD 75431136 + 75431116 75431156 41 GTATCTGGACCGAGACAAGCCACGGCAGGGGGGCCGGCACA GTATCTGGACCGAGACAAGCCACTGCAGGGGGGCCGGCACA < 41bp 0.884650426163242 0.565325887097373 0.33400857 0.4879608 prediction 0.638649078131739 Functional Loss - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75431136 chr11:75431139 nonsynonymous SNV 0.227 0 24 hm5C_associated_SNPs_52112 0 0 0 0 1 MOGAT2 chr11:75431215 5'GT 75431215 Upstream 77bp
chr12 113812778 113812778 1 + G T UCEC 113812775 + 113812755 113812795 41 CAGCACATGCTGCGTGTCATCAAGAAGTACTGGCTCCAGTT CAGCACATGCTGCGTGTCATCAATAAGTACTGGCTCCAGTT < 41bp 0.870406968152858 0.551083059649851 0.91330516 0.2038239 prediction 0.638647817006015 Functional Loss - PLBD2 ENSG00000151176 CDS Human protein_coding chr12:113812775 chr12:113812778 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52113 0 0 1 0 1 PLBD2 chr12:113812812 5'GT 113812812 Upstream 35bp
chr16 31427891 31427891 1 + G T LUAD 31427888 + 31427868 31427908 41 GATTGTGACTGTGTGGAACGCAGGTGAGGATTCCTACGGAA GATTGTGACTGTGTGGAACGCAGTTGAGGATTCCTACGGAA < 41bp 0.819310940942981 0.436413467235691 0.73120266 0.22636235 prediction 0.638621881885962 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31427888 chr16:31427891 nonsynonymous SNV 0.108 3 24 hm5C_associated_SNPs_52116 0 0 0 0 2 ITGAD chr16:31427826 3'AG 31427826 Downstream 66bp
chr16 31427891 31427891 1 + G T LUAD 31427888 + 31427868 31427908 41 GATTGTGACTGTGTGGAACGCAGGTGAGGATTCCTACGGAA GATTGTGACTGTGTGGAACGCAGTTGAGGATTCCTACGGAA < 41bp 0.819310940942981 0.436413467235691 0.73120266 0.22636235 prediction 0.638621881885962 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31427888 chr16:31427891 nonsynonymous SNV 0.108 3 24 hm5C_associated_SNPs_52116 0 0 0 0 2 ITGAD chr16:31427967 5'GT 31427967 Upstream 77bp
chr16 31427890 31427890 1 + G T LUAD 31427888 + 31427868 31427908 41 GATTGTGACTGTGTGGAACGCAGGTGAGGATTCCTACGGAA GATTGTGACTGTGTGGAACGCATGTGAGGATTCCTACGGAA < 41bp 0.819310940942981 0.495166667505069 0.73120266 0.11425805 prediction 0.638621881885962 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31427888 chr16:31427890 nonsynonymous SNV 0.114 3 23 hm5C_associated_SNPs_52117 0 0 0 0 2 ITGAD chr16:31427826 3'AG 31427826 Downstream 65bp
chr16 31427890 31427890 1 + G T LUAD 31427888 + 31427868 31427908 41 GATTGTGACTGTGTGGAACGCAGGTGAGGATTCCTACGGAA GATTGTGACTGTGTGGAACGCATGTGAGGATTCCTACGGAA < 41bp 0.819310940942981 0.495166667505069 0.73120266 0.11425805 prediction 0.638621881885962 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31427888 chr16:31427890 nonsynonymous SNV 0.114 3 23 hm5C_associated_SNPs_52117 0 0 0 0 2 ITGAD chr16:31427967 5'GT 31427967 Upstream 78bp
chr16 844189 844189 1 + G T UCEC 844186 + 844166 844206 41 GCTGCCTCTGCGGGCGAGCACGAGAAGGTGGTCCAGGTACC GCTGCCTCTGCGGGCGAGCACGATAAGGTGGTCCAGGTACC < 41bp 0.876172347935076 0.556880009866357 0.9133844 0.8414577 prediction 0.638584676137438 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:844186 chr16:844189 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_52118 0 0 1 0 1 CHTF18 chr16:844201 5'GT 844201 Upstream 13bp
chr17 27379978 27379978 1 + G T UCEC 27379975 + 27379955 27379995 41 TGCTGGGAATGAAAGAGAATCAAGAATTAAAGACAATCCAG TGCTGGGAATGAAAGAGAATCAATAATTAAAGACAATCCAG < 41bp 0.819255290205376 0.465852265244527 0.39606932 0.25835168 prediction 0.638510580410751 Functional Loss - PIPOX ENSG00000179761 CDS Human protein_coding chr17:27379975 chr17:27379978 stopgain 0.399 1 24 hm5C_associated_SNPs_52122 0 0 0 0 1 PIPOX chr17:27379938 3'AG 27379938 Downstream 41bp
chr2 69046400 69046400 1 + G T LUSC 69046397 + 69046377 69046417 41 GTGGCCCGAAGCTCTGTAGGCTGGGATGCCACTGAAGACCT GTGGCCCGAAGCTCTGTAGGCTGTGATGCCACTGAAGACCT < 41bp 0.872574138142407 0.553344529837009 0.30242527 0.055369705 prediction 0.638459216610798 Functional Loss - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69046397 chr2:69046400 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_52124 0 0 0 0 1 ARHGAP25 chr2:69046451 5'GT 69046451 Upstream 52bp
chr5 54326341 54326341 1 + G T BLCA 54326338 + 54326318 54326358 41 ATGAGGCCTCCAAACAAACACTGGAGATCAAAAAATTTATA ATGAGGCCTCCAAACAAACACTGTAGATCAAAAAATTTATA < 41bp 0.82302161189371 0.50389545065017 0.10705289 0.06834403 prediction 0.63825232248708 Functional Loss - GZMK ENSG00000113088 CDS Human protein_coding chr5:54326338 chr5:54326341 stopgain 0.144 0 24 hm5C_associated_SNPs_52132 0 0 0 0 2 GZMK chr5:54326262 3'AG 54326262 Downstream 80bp
chr5 54326341 54326341 1 + G T BLCA 54326338 + 54326318 54326358 41 ATGAGGCCTCCAAACAAACACTGGAGATCAAAAAATTTATA ATGAGGCCTCCAAACAAACACTGTAGATCAAAAAATTTATA < 41bp 0.82302161189371 0.50389545065017 0.10705289 0.06834403 prediction 0.63825232248708 Functional Loss - GZMK ENSG00000113088 CDS Human protein_coding chr5:54326338 chr5:54326341 stopgain 0.144 0 24 hm5C_associated_SNPs_52132 0 0 0 0 2 GZMK chr5:54326412 5'GT 54326412 Upstream 72bp
chr1 110775544 110775544 1 + G T UCEC 110775541 + 110775521 110775561 41 CTTTAAACACAGAGACCTGCCAAGACGCCCTCTCGTCCAAC CTTTAAACACAGAGACCTGCCAATACGCCCTCTCGTCCAAC < 41bp 0.81911984944556 0.470010582763299 0.047296047 0.012127638 prediction 0.638239698891121 Functional Loss - KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110775541 chr1:110775544 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_52133 0 0 0 1 1 KCNC4 chr1:110775533 3'AG 110775533 Downstream 12bp
chr8 125487501 125487501 1 + A C CESC 125487497 + 125487477 125487517 41 GATTCCAGCCAAAGCCGGTTCTGCATCGTGCTCCAGATCTT GATTCCAGCCAAAGCCGGTTCTGCCTCGTGCTCCAGATCTT < 41bp 0.819116645678024 0.437185157465539 0.041434467 0.020603657 prediction 0.638233291356047 Functional Loss - RNF139 ENSG00000170881 CDS Human protein_coding chr8:125487497 chr8:125487501 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_52135 0 0 1 0 1 RNF139 chr8:125487531 5'GT 125487531 Upstream 31bp
chr18 43219767 43219767 1 + G T LUSC 43219764 + 43219744 43219784 41 GTGTATGGCTGTGACAATCCCTGGACAGGCGGCGTGTTCCT GTGTATGGCTGTGACAATCCCTGTACAGGCGGCGTGTTCCT < 41bp 0.856266272589964 0.53719218846795 0.15229219 0.19701794 prediction 0.638148168244026 Functional Loss - SLC14A2 ENSG00000132874 CDS Human protein_coding chr18:43219764 chr18:43219767 nonsynonymous SNV 0.896 4 24 hm5C_associated_SNPs_52138 0 0 0 0 2 SLC14A2 chr18:43219711 3'AG 43219711 Downstream 57bp
chr18 43219767 43219767 1 + G T LUSC 43219764 + 43219744 43219784 41 GTGTATGGCTGTGACAATCCCTGGACAGGCGGCGTGTTCCT GTGTATGGCTGTGACAATCCCTGTACAGGCGGCGTGTTCCT < 41bp 0.856266272589964 0.53719218846795 0.15229219 0.19701794 prediction 0.638148168244026 Functional Loss - SLC14A2 ENSG00000132874 CDS Human protein_coding chr18:43219764 chr18:43219767 nonsynonymous SNV 0.896 4 24 hm5C_associated_SNPs_52138 0 0 0 0 2 SLC14A2 chr18:43219858 5'GT 43219858 Upstream 92bp
chr14 69967293 69967293 1 + G T UCEC 69967291 + 69967271 69967311 41 TGCCTGTTCTGGTTCTTCCTCAGGGCGTCATCCCTCTGGGG TGCCTGTTCTGGTTCTTCCTCATGGCGTCATCCCTCTGGGG < 41bp 0.824994186055597 0.505924578174463 0.9490167 0.8613 prediction 0.638139215762268 Functional Loss - PLEKHD1 ENSG00000175985 splicing Human protein_coding chr14:69967291 chr14:69967293 . 0.469 0 23 hm5C_associated_SNPs_52139 0 0 0 0 1 PLEKHD1 chr14:69967383 5'GT 69967383 Upstream 91bp
chr5 178503517 178503517 1 + G T UCEC 178503514 + 178503494 178503534 41 TGGTTGCACCTGGACTCTGCCCAGAGGGCCTTGTACCGGGA TGGTTGCACCTGGACTCTGCCCATAGGGCCTTGTACCGGGA < 41bp 0.864648941598198 0.545583414333964 0.17913309 0.041620612 prediction 0.638131054528467 Functional Loss - ZNF354C ENSG00000177932 CDS Human protein_coding chr5:178503514 chr5:178503517 nonsynonymous SNV 0.329 3 24 hm5C_associated_SNPs_52140 0 0 0 0 2 ZNF354C chr5:178503446 3'AG 178503446 Downstream 72bp
chr5 178503517 178503517 1 + G T UCEC 178503514 + 178503494 178503534 41 TGGTTGCACCTGGACTCTGCCCAGAGGGCCTTGTACCGGGA TGGTTGCACCTGGACTCTGCCCATAGGGCCTTGTACCGGGA < 41bp 0.864648941598198 0.545583414333964 0.17913309 0.041620612 prediction 0.638131054528467 Functional Loss - ZNF354C ENSG00000177932 CDS Human protein_coding chr5:178503514 chr5:178503517 nonsynonymous SNV 0.329 3 24 hm5C_associated_SNPs_52140 0 0 0 0 2 ZNF354C chr5:178503572 5'GT 178503572 Upstream 56bp
chr19 17394613 17394613 1 + G T STAD 17394611 + 17394591 17394631 41 GAGGCAAGCTCTACAGGTGGCAGGGAACCTGTCGGCCCTTG GAGGCAAGCTCTACAGGTGGCATGGAACCTGTCGGCCCTTG < 41bp 0.821329036373958 0.502281487732263 0.8928981 0.368254 prediction 0.638095097283391 Functional Loss - ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17394611 chr19:17394613 nonsynonymous SNV 0.005 1 23 hm5C_associated_SNPs_52142 0 0 0 0 1 ANKLE1 chr19:17394693 5'GT 17394693 Upstream 81bp
chr12 109870798 109870798 1 + G T OV 109870795 + 109870775 109870815 41 AAGTACATCGGCTACAAACCCGAGGAATACAAGTTAGGCAA AAGTACATCGGCTACAAACCCGATGAATACAAGTTAGGCAA < 41bp 0.818986625224315 0.452664497965007 0.76900643 0.11895925 prediction 0.63797325044863 Functional Loss - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109870795 chr12:109870798 nonsynonymous SNV 0.795 1 24 hm5C_associated_SNPs_52147 0 0 0 0 2 MYO1H chr12:109870702 3'AG 109870702 Downstream 97bp
chr12 109870798 109870798 1 + G T OV 109870795 + 109870775 109870815 41 AAGTACATCGGCTACAAACCCGAGGAATACAAGTTAGGCAA AAGTACATCGGCTACAAACCCGATGAATACAAGTTAGGCAA < 41bp 0.818986625224315 0.452664497965007 0.76900643 0.11895925 prediction 0.63797325044863 Functional Loss - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109870795 chr12:109870798 nonsynonymous SNV 0.795 1 24 hm5C_associated_SNPs_52147 0 0 0 0 2 MYO1H chr12:109870815 5'GT 109870815 Upstream 18bp
chr16 22448380 22448380 1 - T G rs373906442 22448384 - 22448364 22448404 41 TGGCGGCAGCTCCTCACGCTCACAAGGCCACTGCTAACCCG TGGCGGCAGCTCCTCACGCTCACACGGCCACTGCTAACCCG < 41bp 0.83052540578561 0.51155049713007 0.43167 0.14893535 prediction 0.63794981731108 Functional Loss - RRN3P3;SMG1P1 ENSG00000237296;ENSG00000257122 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:22448384 chr16:22448380 . . 0 25 hm5C_associated_SNPs_52149 0 0 0 0 1 RRN3P3 chr16:22448326 5'GT 22448326 Upstream 55bp
chr16 50759404 50759404 1 + G T LUSC 50759401 + 50759381 50759421 41 TCTCTCTTCTTCTCACCAGCCTGGAGGAGAACCATCTCCAG TCTCTCTTCTTCTCACCAGCCTGTAGGAGAACCATCTCCAG < 41bp 0.818962183432367 0.483747166921344 0.23510423 0.18145731 prediction 0.637924366864735 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50759401 chr16:50759404 stopgain 1.000 1 24 hm5C_associated_SNPs_52150 0 0 0 0 2 NOD2 chr16:50759400 3'AG 50759400 Downstream 5bp
chr16 50759404 50759404 1 + G T LUSC 50759401 + 50759381 50759421 41 TCTCTCTTCTTCTCACCAGCCTGGAGGAGAACCATCTCCAG TCTCTCTTCTTCTCACCAGCCTGTAGGAGAACCATCTCCAG < 41bp 0.818962183432367 0.483747166921344 0.23510423 0.18145731 prediction 0.637924366864735 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50759401 chr16:50759404 stopgain 1.000 1 24 hm5C_associated_SNPs_52150 0 0 0 0 2 NOD2 chr16:50759483 5'GT 50759483 Upstream 80bp
chr14 70193856 70193856 1 + G T rs370413242 70193853 + 70193833 70193873 41 GCTCAGCCCGCTGGCGCCATCTAGTGTCGAATGAGGAGGCG GCTCAGCCCGCTGGCGCCATCTATTGTCGAATGAGGAGGCG < 41bp 0.818961778356455 0.490497656337324 0.26364058 0.25912678 prediction 0.637923556712911 Functional Loss - SUSD6;LOC100289511 ENSG00000100650 UTR5 Human protein_coding chr14:70193853 chr14:70193856 . . 0 24 hm5C_associated_SNPs_52151 0 0 0 0 1 SUSD6;LOC100289511 chr14:70193908 5'GT 70193908 Upstream 53bp
chr17 4684113 4684113 1 + G T LUAD 4684111 + 4684091 4684131 41 GTCCGGGGATTGCAGCCGTTCGGGCAGGGGGCAAGGGCTGC GTCCGGGGATTGCAGCCGTTCGTGCAGGGGGCAAGGGCTGC < 41bp 0.818939256773327 0.492308968838095 0.8034004 0.5661969 prediction 0.637878513546654 Functional Loss - TM4SF5 ENSG00000142484 CDS Human protein_coding chr17:4684111 chr17:4684113 synonymous SNV . 0 23 hm5C_associated_SNPs_52152 0 0 1 0 1 TM4SF5 chr17:4684084 3'AG 4684084 Downstream 30bp
chr10 116037774 116037774 1 + G T OV 116037772 + 116037752 116037792 41 AACGGCCTCTTCAGCACCCTCAGCAGCTCGGCCATCTGCTC AACGGCCTCTTCAGCACCCTCATCAGCTCGGCCATCTGCTC < 41bp 0.818938413832309 0.490538255016092 0.194 0.03895107 prediction 0.637876827664617 Functional Loss - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116037772 chr10:116037774 nonsynonymous SNV 0.682 1 23 hm5C_associated_SNPs_52153 0 0 0 0 1 VWA2 chr10:116037806 5'GT 116037806 Upstream 33bp
chr3 89480348 89480348 1 + G T LUAD 89480345 + 89480325 89480365 41 TTCAGCTAGTGGGGATGCTTCGAGGGATAGCATCTGGCATG TTCAGCTAGTGGGGATGCTTCGATGGATAGCATCTGGCATG < 41bp 0.818913523178335 0.477300865579889 0.9322833 0.21079707 prediction 0.637827046356669 Functional Loss - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89480345 chr3:89480348 nonsynonymous SNV 0.846 4 24 hm5C_associated_SNPs_52156 0 0 0 0 1 EPHA3 chr3:89480300 3'AG 89480300 Downstream 49bp
chr10 126671833 126671833 1 + G T UCEC 126671830 + 126671810 126671850 41 GTTTATGGAGTAAAATATTACAAGAGTTTCCGGGGAGAAAC GTTTATGGAGTAAAATATTACAATAGTTTCCGGGGAGAAAC < 41bp 0.845344452157048 0.526497584983294 0.36131817 0.13421103 prediction 0.637693734347508 Functional Loss - ZRANB1 ENSG00000019995 CDS Human protein_coding chr10:126671830 chr10:126671833 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_52159 0 0 1 0 2 ZRANB1 chr10:126671744 3'AG 126671744 Downstream 90bp
chr10 126671833 126671833 1 + G T UCEC 126671830 + 126671810 126671850 41 GTTTATGGAGTAAAATATTACAAGAGTTTCCGGGGAGAAAC GTTTATGGAGTAAAATATTACAATAGTTTCCGGGGAGAAAC < 41bp 0.845344452157048 0.526497584983294 0.36131817 0.13421103 prediction 0.637693734347508 Functional Loss - ZRANB1 ENSG00000019995 CDS Human protein_coding chr10:126671830 chr10:126671833 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_52159 0 0 1 0 2 ZRANB1 chr10:126671873 5'GT 126671873 Upstream 41bp
chr17 58506895 58506895 1 + G T UCEC 58506892 + 58506872 58506912 41 GAGCCCCCTGCCTGGGCAGCCAAGATCCCAGGACCATGTCA GAGCCCCCTGCCTGGGCAGCCAATATCCCAGGACCATGTCA < 41bp 0.818841786076631 0.453356392621407 0.1832704 0.027968556 prediction 0.637683572153262 Functional Loss - C17orf64 ENSG00000141371 CDS Human protein_coding chr17:58506892 chr17:58506895 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_52160 0 0 0 0 1 C17orf64 chr17:58506918 5'GT 58506918 Upstream 24bp
chr19 35832310 35832310 1 + G T LUAD 35832307 + 35832287 35832327 41 TCCGAGATTCACTCTGGAAACTCGGTCAGCCTCCAATGTGA TCCGAGATTCACTCTGGAAACTCTGTCAGCCTCCAATGTGA < 41bp 0.818795641088896 0.450453655684395 0.03094238 0.004072666 prediction 0.637591282177793 Functional Loss - CD22 ENSG00000012124 CDS Human protein_coding chr19:35832307 chr19:35832310 synonymous SNV . 0 24 hm5C_associated_SNPs_52163 0 0 0 0 1 CD22 chr19:35832246 3'AG 35832246 Downstream 65bp
chr19 13051182 13051182 1 + G T UCEC 13051179 + 13051159 13051199 41 GATTGGGACTTCCTGCCACCCAAGAAGATAAAGGATCCTGA GATTGGGACTTCCTGCCACCCAATAAGATAAAGGATCCTGA < 41bp 0.86358230084006 0.544820049328698 0.52201724 0.2842616 prediction 0.637524503022723 Functional Loss - CALR ENSG00000179218 CDS Human protein_coding chr19:13051179 chr19:13051182 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52166 0 0 1 0 1 CALR chr19:13051266 5'GT 13051266 Upstream 85bp
chr18 61226889 61226889 1 + A C COAD 61226885 + 61226865 61226905 41 CTCTCCAAATTAGACAGGATCAAGACTGATTACACACTGAG CTCTCCAAATTAGACAGGATCAAGCCTGATTACACACTGAG < 41bp 0.818734860991666 0.438696902361347 0.3057125 0.1648981 prediction 0.637469721983333 Functional Loss - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61226885 chr18:61226889 nonsynonymous SNV 0.055 1 25 hm5C_associated_SNPs_52169 0 0 0 0 2 SERPINB12 chr18:61226811 3'AG 61226811 Downstream 79bp
chr18 61226889 61226889 1 + A C COAD 61226885 + 61226865 61226905 41 CTCTCCAAATTAGACAGGATCAAGACTGATTACACACTGAG CTCTCCAAATTAGACAGGATCAAGCCTGATTACACACTGAG < 41bp 0.818734860991666 0.438696902361347 0.3057125 0.1648981 prediction 0.637469721983333 Functional Loss - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61226885 chr18:61226889 nonsynonymous SNV 0.055 1 25 hm5C_associated_SNPs_52169 0 0 0 0 2 SERPINB12 chr18:61226951 5'GT 61226951 Upstream 63bp
chrX 46949222 46949222 1 + G T LIHC 46949219 + 46949199 46949239 41 CAGCAGTTCTTGAGCGGCACCAGGGGGCCCTGTACTCCCTC CAGCAGTTCTTGAGCGGCACCAGTGGGCCCTGTACTCCCTC < 41bp 0.880167468449486 0.561434830170177 0.90656185 0.3362761 prediction 0.637465276558619 Functional Loss - RGN ENSG00000130988 CDS Human protein_coding chrX:46949219 chrX:46949222 nonsynonymous SNV 0.694 4 24 hm5C_associated_SNPs_52170 0 0 0 0 1 RGN chrX:46949175 3'AG 46949175 Downstream 48bp
chr19 5144306 5144306 1 + G T COAD 5144303 + 5144283 5144323 41 CTAGGCCAGGTGGTCATCACCAAGAACCGCAACGGGCTGTA CTAGGCCAGGTGGTCATCACCAATAACCGCAACGGGCTGTA < 41bp 0.873167642658511 0.554437298810646 0.8666668 0.19734594 prediction 0.63746068769573 Functional Loss - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5144303 chr19:5144306 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52171 0 0 1 0 1 KDM4B chr19:5144259 3'AG 5144259 Downstream 48bp
chr2 233527587 233527587 1 + G T LUSC 233527584 + 233527564 233527604 41 ATGGAGAAGCTGGGGGCCCCCCAGACCCACCTGGGCCTGAA ATGGAGAAGCTGGGGGCCCCCCATACCCACCTGGGCCTGAA < 41bp 0.818727317162264 0.453342505641464 0.293162 0.22319466 prediction 0.637454634324528 Functional Loss - EFHD1 ENSG00000115468 CDS Human protein_coding chr2:233527584 chr2:233527587 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_52172 0 0 1 0 2 EFHD1 chr2:233527512 3'AG 233527512 Downstream 76bp
chr2 233527587 233527587 1 + G T LUSC 233527584 + 233527564 233527604 41 ATGGAGAAGCTGGGGGCCCCCCAGACCCACCTGGGCCTGAA ATGGAGAAGCTGGGGGCCCCCCATACCCACCTGGGCCTGAA < 41bp 0.818727317162264 0.453342505641464 0.293162 0.22319466 prediction 0.637454634324528 Functional Loss - EFHD1 ENSG00000115468 CDS Human protein_coding chr2:233527584 chr2:233527587 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_52172 0 0 1 0 2 EFHD1 chr2:233527659 5'GT 233527659 Upstream 73bp
chr17 72921033 72921033 1 + G T LIHC 72921030 + 72921010 72921050 41 GACGCGCACGCTGGCCCCATCTGGCTCCGAGGTGCCAGGGG GACGCGCACGCTGGCCCCATCTGTCTCCGAGGTGCCAGGGG < 41bp 0.81870678163701 0.446848764754643 0.10008946 0.04273346 prediction 0.637413563274021 Functional Loss - OTOP2 ENSG00000183034 CDS Human protein_coding chr17:72921030 chr17:72921033 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52175 0 0 0 0 1 OTOP2 chr17:72921040 5'GT 72921040 Upstream 8bp
chr18 48255612 48255612 1 + G T LUSC 48255609 + 48255589 48255629 41 GAGGTACAGCGCGACCCGCGCGCGGGTTCGGCGCCACTGGC GAGGTACAGCGCGACCCGCGCGCTGGTTCGGCGCCACTGGC < 41bp 0.818703724650215 0.451565613280194 0.9051137 0.31345588 prediction 0.637407449300431 Functional Loss - MAPK4 ENSG00000141639 CDS Human protein_coding chr18:48255609 chr18:48255612 synonymous SNV . 0 24 hm5C_associated_SNPs_52176 0 0 0 0 1 MAPK4 chr18:48255528 3'AG 48255528 Downstream 85bp
chr1 115398126 115398126 1 + G T UCEC 115398123 + 115398103 115398143 41 CTTTGCATTGTTCGTACCACCGAGATCAAGCAGCAGTCAGG CTTTGCATTGTTCGTACCACCGATATCAAGCAGCAGTCAGG < 41bp 0.821649442064804 0.502960537541924 0.49451068 0.04247713 prediction 0.63737780904576 Functional Loss - SYCP1 ENSG00000198765 CDS Human protein_coding chr1:115398123 chr1:115398126 nonsynonymous SNV 0.007 4 24 hm5C_associated_SNPs_52178 0 0 0 1 3 SYCP1 chr1:115398059 3'AG 115398059 Downstream 68bp
chr1 115398126 115398126 1 + G T UCEC 115398123 + 115398103 115398143 41 CTTTGCATTGTTCGTACCACCGAGATCAAGCAGCAGTCAGG CTTTGCATTGTTCGTACCACCGATATCAAGCAGCAGTCAGG < 41bp 0.821649442064804 0.502960537541924 0.49451068 0.04247713 prediction 0.63737780904576 Functional Loss - SYCP1 ENSG00000198765 CDS Human protein_coding chr1:115398123 chr1:115398126 nonsynonymous SNV 0.007 4 24 hm5C_associated_SNPs_52178 0 0 0 1 3 SYCP1 chr1:115398062 3'AG 115398062 Downstream 65bp
chr1 115398126 115398126 1 + G T UCEC 115398123 + 115398103 115398143 41 CTTTGCATTGTTCGTACCACCGAGATCAAGCAGCAGTCAGG CTTTGCATTGTTCGTACCACCGATATCAAGCAGCAGTCAGG < 41bp 0.821649442064804 0.502960537541924 0.49451068 0.04247713 prediction 0.63737780904576 Functional Loss - SYCP1 ENSG00000198765 CDS Human protein_coding chr1:115398123 chr1:115398126 nonsynonymous SNV 0.007 4 24 hm5C_associated_SNPs_52178 0 0 0 1 3 SYCP1 chr1:115398193 5'GT 115398193 Upstream 68bp
chr17 72338125 72338125 1 + G T SKCM 72338123 + 72338103 72338143 41 CCTTTGACTTCACCGCCACCCAGGTGAGGGAGGGCCTGGGC CCTTTGACTTCACCGCCACCCATGTGAGGGAGGGCCTGGGC < 41bp 0.823099173143771 0.504417323666029 0.9274249 0.36406785 prediction 0.637363698955484 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72338123 chr17:72338125 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_52180 0 0 0 0 1 KIF19 chr17:72338125 5'GT 72338125 Upstream 1bp
chr19 110703 110703 1 + G T UCEC 110700 + 110680 110720 41 TGGTGACTGAATTCATTTTTCTGGGTCTCTCTGATTCTCAG TGGTGACTGAATTCATTTTTCTGTGTCTCTCTGATTCTCAG < 41bp 0.836630462962164 0.517988577734663 0.8914088 0.29535058 prediction 0.637283770455002 Functional Loss - OR4F17 ENSG00000176695 CDS Human protein_coding chr19:110700 chr19:110703 nonsynonymous SNV 0.016 3 24 hm5C_associated_SNPs_52184 0 0 0 0 1 OR4F17 chr19:110625 3'AG 110625 Downstream 79bp
chr11 66288771 66288771 1 + G T STAD 66288768 + 66288748 66288788 41 TTCCCAGCGTCCCCGTCTTCCTAGAGGTTTCTGGCCAGTTT TTCCCAGCGTCCCCGTCTTCCTATAGGTTTCTGGCCAGTTT < 41bp 0.818636215339292 0.458840206225727 0.5648333 0.38930348 prediction 0.637272430678585 Functional Loss - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66288768 chr11:66288771 stopgain 0.990 0 24 hm5C_associated_SNPs_52185 0 0 1 2 2 BBS1 chr11:66288741 3'AG 66288741 Downstream 31bp
chr11 66288771 66288771 1 + G T STAD 66288768 + 66288748 66288788 41 TTCCCAGCGTCCCCGTCTTCCTAGAGGTTTCTGGCCAGTTT TTCCCAGCGTCCCCGTCTTCCTATAGGTTTCTGGCCAGTTT < 41bp 0.818636215339292 0.458840206225727 0.5648333 0.38930348 prediction 0.637272430678585 Functional Loss - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66288768 chr11:66288771 stopgain 0.990 0 24 hm5C_associated_SNPs_52185 0 0 1 2 2 BBS1 chr11:66288847 5'GT 66288847 Upstream 77bp
chr11 111899321 111899321 1 + G T UCEC 111899319 + 111899299 111899339 41 ATACTTGTTGCTGAAGGTACCAGGGATGTTCCCATCGGAGC ATACTTGTTGCTGAAGGTACCATGGATGTTCCCATCGGAGC < 41bp 0.818632750940498 0.494845482241873 0.9118326 0.032451183 prediction 0.637265501880997 Functional Loss - DLAT ENSG00000150768 CDS Human protein_coding chr11:111899319 chr11:111899321 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52186 0 0 1 0 2 DLAT chr11:111899239 3'AG 111899239 Downstream 83bp
chr11 111899321 111899321 1 + G T UCEC 111899319 + 111899299 111899339 41 ATACTTGTTGCTGAAGGTACCAGGGATGTTCCCATCGGAGC ATACTTGTTGCTGAAGGTACCATGGATGTTCCCATCGGAGC < 41bp 0.818632750940498 0.494845482241873 0.9118326 0.032451183 prediction 0.637265501880997 Functional Loss - DLAT ENSG00000150768 CDS Human protein_coding chr11:111899319 chr11:111899321 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52186 0 0 1 0 2 DLAT chr11:111899363 5'GT 111899363 Upstream 43bp
chr20 42969841 42969841 1 + G T LUAD 42969838 + 42969818 42969858 41 TTGCCTTTCTTTCCCCAGGTCTGGGACAAGCGGCTGGCCAG TTGCCTTTCTTTCCCCAGGTCTGTGACAAGCGGCTGGCCAG < 41bp 0.818629945427223 0.443092854204057 0.5382611 0.27719826 prediction 0.637259890854445 Functional Loss - R3HDML ENSG00000101074 CDS Human protein_coding chr20:42969838 chr20:42969841 nonsynonymous SNV 0.576 4 24 hm5C_associated_SNPs_52188 0 0 0 0 1 R3HDML chr20:42969836 3'AG 42969836 Downstream 6bp
chrX 69504455 69504455 1 + G T UCEC 69504452 + 69504432 69504472 41 CTTCAGCGGTTGAAATCGAACTGGAATCCTTCGAGGAGTCA CTTCAGCGGTTGAAATCGAACTGTAATCCTTCGAGGAGTCA < 41bp 0.850963709578543 0.532334905204366 0.17550862 0.0151819885 prediction 0.637257608748355 Functional Loss - RAB41 ENSG00000147127 CDS Human protein_coding chrX:69504452 chrX:69504455 stopgain 0.256 0 24 hm5C_associated_SNPs_52189 0 0 0 0 1 RAB41 chrX:69504438 3'AG 69504438 Downstream 18bp
chr3 52547956 52547956 1 + G T SKCM 52547953 + 52547933 52547973 41 GGCAGGGGTTGCTGCAGCAGCTGGACTTGGTGCCTGCCTTC GGCAGGGGTTGCTGCAGCAGCTGTACTTGGTGCCTGCCTTC < 41bp 0.849001931457654 0.530397698703892 0.7883624 0.28756106 prediction 0.637208465507524 Functional Loss - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52547953 chr3:52547956 nonsynonymous SNV 0.454 2 24 hm5C_associated_SNPs_52190 0 0 0 0 2 STAB1 chr3:52547899 3'AG 52547899 Downstream 58bp
chr3 52547956 52547956 1 + G T SKCM 52547953 + 52547933 52547973 41 GGCAGGGGTTGCTGCAGCAGCTGGACTTGGTGCCTGCCTTC GGCAGGGGTTGCTGCAGCAGCTGTACTTGGTGCCTGCCTTC < 41bp 0.849001931457654 0.530397698703892 0.7883624 0.28756106 prediction 0.637208465507524 Functional Loss - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52547953 chr3:52547956 nonsynonymous SNV 0.454 2 24 hm5C_associated_SNPs_52190 0 0 0 0 2 STAB1 chr3:52547997 5'GT 52547997 Upstream 42bp
chr19 8495557 8495557 1 + G T LUAD 8495554 + 8495534 8495574 41 CCCTGCAGTGGCTGAAGGACCCGGGGCCGCGGACGGAGAAG CCCTGCAGTGGCTGAAGGACCCGTGGCCGCGGACGGAGAAG < 41bp 0.818593422183466 0.43940287839804 0.8972018 0.30827576 prediction 0.637186844366932 Functional Loss - MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8495554 chr19:8495557 nonsynonymous SNV 0.909 3 24 hm5C_associated_SNPs_52192 0 0 0 0 1 MARCH2 chr19:8495542 3'AG 8495542 Downstream 16bp
chr5 169533520 169533520 1 + G T LUAD 169533517 + 169533497 169533537 41 ACTGCTTCAAGAAGGTGCCCCGCGACGAGGACGACCCGGGT ACTGCTTCAAGAAGGTGCCCCGCTACGAGGACGACCCGGGT < 41bp 0.818575722302149 0.457324914039893 0.21606594 0.1738959 prediction 0.637151444604297 Functional Loss - FOXI1 ENSG00000168269 CDS Human protein_coding chr5:169533517 chr5:169533520 nonsynonymous SNV 0.582 5 24 hm5C_associated_SNPs_52197 0 0 0 0 1 FOXI1 chr5:169533535 5'GT 169533535 Upstream 16bp
chr9 131847036 131847036 1 + G T LUAD 131847033 + 131847013 131847053 41 TGACCCTCATCATATTTAAGCGGGAGCTGCACACGGTGAGT TGACCCTCATCATATTTAAGCGGTAGCTGCACACGGTGAGT < 41bp 0.880738179651949 0.562180983619161 0.91197014 0.3878258 prediction 0.637114392065576 Functional Loss - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131847033 chr9:131847036 stopgain 1.000 1 24 hm5C_associated_SNPs_52199 0 0 1 0 2 DOLPP1 chr9:131846947 3'AG 131846947 Downstream 90bp
chr9 131847036 131847036 1 + G T LUAD 131847033 + 131847013 131847053 41 TGACCCTCATCATATTTAAGCGGGAGCTGCACACGGTGAGT TGACCCTCATCATATTTAAGCGGTAGCTGCACACGGTGAGT < 41bp 0.880738179651949 0.562180983619161 0.91197014 0.3878258 prediction 0.637114392065576 Functional Loss - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131847033 chr9:131847036 stopgain 1.000 1 24 hm5C_associated_SNPs_52199 0 0 1 0 2 DOLPP1 chr9:131847047 5'GT 131847047 Upstream 12bp
chr7 141414042 141414042 1 + G T UCEC 141414040 + 141414020 141414060 41 CCGGTTGGTGATTTCTCCAACAGGGAAGCTTCCTTCCAGAG CCGGTTGGTGATTTCTCCAACATGGAAGCTTCCTTCCAGAG < 41bp 0.81853531695957 0.497365609370039 0.9669136 0.25755364 prediction 0.637070633919141 Functional Loss - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141414040 chr7:141414042 nonsynonymous SNV 0.054 2 23 hm5C_associated_SNPs_52201 0 0 0 0 1 WEE2 chr7:141414009 3'AG 141414009 Downstream 34bp
chr6 130425672 130425672 1 + G T COAD 130425669 + 130425649 130425689 41 TCCGGCTAGTCCGTCATTTCCAAGAAATAAAAGGACAGATG TCCGGCTAGTCCGTCATTTCCAATAAATAAAAGGACAGATG < 41bp 0.85820392979328 0.539675405630264 0.4083594 0.058190912 prediction 0.637057048326031 Functional Loss - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130425669 chr6:130425672 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_52202 0 0 0 0 1 L3MBTL3 chr6:130425720 5'GT 130425720 Upstream 49bp
chr10 17702479 17702479 1 + G T UCEC 17702476 + 17702456 17702496 41 TCTACAGAGAAAGCAACCAGCGAGATGAATACTGCTGAGGA TCTACAGAGAAAGCAACCAGCGATATGAATACTGCTGAGGA < 41bp 0.848167476335508 0.52964277758396 0.78557175 0.23929787 prediction 0.637049397503096 Functional Loss - STAM ENSG00000136738 CDS Human protein_coding chr10:17702476 chr10:17702479 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_52203 0 0 1 0 2 STAM chr10:17702463 3'AG 17702463 Downstream 17bp
chr10 17702479 17702479 1 + G T UCEC 17702476 + 17702456 17702496 41 TCTACAGAGAAAGCAACCAGCGAGATGAATACTGCTGAGGA TCTACAGAGAAAGCAACCAGCGATATGAATACTGCTGAGGA < 41bp 0.848167476335508 0.52964277758396 0.78557175 0.23929787 prediction 0.637049397503096 Functional Loss - STAM ENSG00000136738 CDS Human protein_coding chr10:17702476 chr10:17702479 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_52203 0 0 1 0 2 STAM chr10:17702547 5'GT 17702547 Upstream 69bp
chr3 50257397 50257397 1 + G T UCEC 50257394 + 50257374 50257414 41 GCCCACGGAGAAGGAGCCTGCAAGATCCACCCCCAAAATCC GCCCACGGAGAAGGAGCCTGCAATATCCACCCCCAAAATCC < 41bp 0.81852149400022 0.478978673916088 0.31156498 0.04854536 prediction 0.63704298800044 Functional Loss - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50257394 chr3:50257397 . 0.697 0 24 hm5C_associated_SNPs_52206 0 0 1 0 2 SLC38A3 chr3:50257313 3'AG 50257313 Downstream 85bp
chr3 50257397 50257397 1 + G T UCEC 50257394 + 50257374 50257414 41 GCCCACGGAGAAGGAGCCTGCAAGATCCACCCCCAAAATCC GCCCACGGAGAAGGAGCCTGCAATATCCACCCCCAAAATCC < 41bp 0.81852149400022 0.478978673916088 0.31156498 0.04854536 prediction 0.63704298800044 Functional Loss - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50257394 chr3:50257397 . 0.697 0 24 hm5C_associated_SNPs_52206 0 0 1 0 2 SLC38A3 chr3:50257416 5'GT 50257416 Upstream 20bp
chr1 197890486 197890486 1 + G T COAD 197890484 + 197890464 197890504 41 CCACCTTGGCATTTCCGCCTCGGAGATGGTCATGCGCGCCC CCACCTTGGCATTTCCGCCTCGTAGATGGTCATGCGCGCCC < 41bp 0.824497200455368 0.50599323903851 0.89424264 0.29930496 prediction 0.637007922833716 Functional Loss - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197890484 chr1:197890486 stopgain 0.988 1 23 hm5C_associated_SNPs_52208 0 0 0 0 1 LHX9 chr1:197890434 3'AG 197890434 Downstream 53bp
chrX 154448504 154448504 1 + A C rs148981599 154448500 + 154448480 154448520 41 GAAACAGCCTGGGAATGAGACTGCAGATACAGTATTAAAGA GAAACAGCCTGGGAATGAGACTGCCGATACAGTATTAAAGA < 41bp 0.818491862163976 0.429195755180324 0.047929823 0.056552082 prediction 0.636983724327952 Functional Loss - VBP1 ENSG00000155959 CDS Human protein_coding chrX:154448500 chrX:154448504 synonymous SNV . 0 25 hm5C_associated_SNPs_52209 0 0 1 0 3 VBP1 chrX:154448460 3'AG 154448460 Downstream 45bp
chrX 154448504 154448504 1 + A C rs148981599 154448500 + 154448480 154448520 41 GAAACAGCCTGGGAATGAGACTGCAGATACAGTATTAAAGA GAAACAGCCTGGGAATGAGACTGCCGATACAGTATTAAAGA < 41bp 0.818491862163976 0.429195755180324 0.047929823 0.056552082 prediction 0.636983724327952 Functional Loss - VBP1 ENSG00000155959 CDS Human protein_coding chrX:154448500 chrX:154448504 synonymous SNV . 0 25 hm5C_associated_SNPs_52209 0 0 1 0 3 VBP1 chrX:154448464 3'AG 154448464 Downstream 41bp
chrX 154448504 154448504 1 + A C rs148981599 154448500 + 154448480 154448520 41 GAAACAGCCTGGGAATGAGACTGCAGATACAGTATTAAAGA GAAACAGCCTGGGAATGAGACTGCCGATACAGTATTAAAGA < 41bp 0.818491862163976 0.429195755180324 0.047929823 0.056552082 prediction 0.636983724327952 Functional Loss - VBP1 ENSG00000155959 CDS Human protein_coding chrX:154448500 chrX:154448504 synonymous SNV . 0 25 hm5C_associated_SNPs_52209 0 0 1 0 3 VBP1 chrX:154448584 5'GT 154448584 Upstream 81bp
chr1 17597649 17597649 1 + G T PAAD 17597646 + 17597626 17597666 41 CTGACCATCTGCCCACAGGCCGAGAACCGCAACGACCGCTG CTGACCATCTGCCCACAGGCCGATAACCGCAACGACCGCTG < 41bp 0.876483932477726 0.558025410000677 0.45527828 0.18722472 prediction 0.636917044954098 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17597646 chr1:17597649 nonsynonymous SNV 0.720 1 24 hm5C_associated_SNPs_52211 0 0 0 0 1 PADI3 chr1:17597673 5'GT 17597673 Upstream 25bp
chr19 33077817 33077817 1 + A C STAD 33077813 + 33077793 33077833 41 TAAAAAAGTAAGCCAACAAACAGAAAAGACAACAACAGTGA TAAAAAAGTAAGCCAACAAACAGACAAGACAACAACAGTGA < 41bp 0.818441462658726 0.452287885196444 0.8124938 0.6388075 prediction 0.636882925317451 Functional Loss - PDCD5 ENSG00000105185 CDS Human protein_coding chr19:33077813 chr19:33077817 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_52213 0 0 1 0 2 PDCD5 chr19:33077764 3'AG 33077764 Downstream 54bp
chr19 33077817 33077817 1 + A C STAD 33077813 + 33077793 33077833 41 TAAAAAAGTAAGCCAACAAACAGAAAAGACAACAACAGTGA TAAAAAAGTAAGCCAACAAACAGACAAGACAACAACAGTGA < 41bp 0.818441462658726 0.452287885196444 0.8124938 0.6388075 prediction 0.636882925317451 Functional Loss - PDCD5 ENSG00000105185 CDS Human protein_coding chr19:33077813 chr19:33077817 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_52213 0 0 1 0 2 PDCD5 chr19:33077835 5'GT 33077835 Upstream 19bp
chr20 57896130 57896130 1 + G T SARC 57896128 + 57896108 57896148 41 AAGCTTCCGGGGCAAGAGGTCTGCGGGGCCACTTCCAGGGA AAGCTTCCGGGGCAAGAGGTCTTCGGGGCCACTTCCAGGGA < 41bp 0.826244708573932 0.507806536863492 0.51353526 0.39544404 prediction 0.63687634342088 Functional Loss - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57896128 chr20:57896130 nonsynonymous SNV 0.165 1 23 hm5C_associated_SNPs_52214 0 0 0 0 1 EDN3 chr20:57896072 3'AG 57896072 Downstream 59bp
chr12 56385939 56385939 1 + G T LUAD 56385936 + 56385916 56385956 41 GGAGGTGCAGCAGGCCGAAGCCGGGGTGTGGATCTCCATGA GGAGGTGCAGCAGGCCGAAGCCGTGGTGTGGATCTCCATGA < 41bp 0.87477231401997 0.556340855711656 0.93656087 0.89600813 prediction 0.636862916616626 Functional Loss - RAB5B ENSG00000111540 CDS Human protein_coding chr12:56385936 chr12:56385939 synonymous SNV . 0 24 hm5C_associated_SNPs_52215 0 0 1 0 1 RAB5B chr12:56385881 3'AG 56385881 Downstream 59bp
chr20 44437813 44437813 1 + G T UCEC 44437811 + 44437791 44437831 41 GCAGCATCACATGCGGGCAACAGGGGGCAAGATGGTAAGCA GCAGCATCACATGCGGGCAACATGGGGCAAGATGGTAAGCA < 41bp 0.818431017509658 0.495570521532265 0.92215204 0.41303068 prediction 0.636862035019315 Functional Loss - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44437811 chr20:44437813 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_52216 0 0 1 0 2 DNTTIP1 chr20:44437753 3'AG 44437753 Downstream 61bp
chr20 44437813 44437813 1 + G T UCEC 44437811 + 44437791 44437831 41 GCAGCATCACATGCGGGCAACAGGGGGCAAGATGGTAAGCA GCAGCATCACATGCGGGCAACATGGGGCAAGATGGTAAGCA < 41bp 0.818431017509658 0.495570521532265 0.92215204 0.41303068 prediction 0.636862035019315 Functional Loss - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44437811 chr20:44437813 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_52216 0 0 1 0 2 DNTTIP1 chr20:44437824 5'GT 44437824 Upstream 12bp
chr8 2048795 2048795 1 + G T BLCA 2048792 + 2048772 2048812 41 GGACTTCAGGGAGGAGGATGCTGGAGAGTGGATCACTGTAA GGACTTCAGGGAGGAGGATGCTGTAGAGTGGATCACTGTAA < 41bp 0.865671024627718 0.547248760346113 0.88934845 0.700626 prediction 0.63684452856321 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2048792 chr8:2048795 nonsynonymous SNV 0.907 0 24 hm5C_associated_SNPs_52220 0 0 0 0 1 MYOM2 chr8:2048844 5'GT 2048844 Upstream 50bp
chr7 158716359 158716359 1 + G T UCEC 158716356 + 158716336 158716376 41 CTGGGATTTGAGAGAAGACTCAAGGCTGCATTACTCTGTGA CTGGGATTTGAGAGAAGACTCAATGCTGCATTACTCTGTGA < 41bp 0.818369480909211 0.439065246025061 0.90323263 0.87982166 prediction 0.636738961818422 Functional Loss - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158716356 chr7:158716359 nonsynonymous SNV 0.346 3 24 hm5C_associated_SNPs_52224 0 0 1 0 2 WDR60 chr7:158716262 3'AG 158716262 Downstream 98bp
chr7 158716359 158716359 1 + G T UCEC 158716356 + 158716336 158716376 41 CTGGGATTTGAGAGAAGACTCAAGGCTGCATTACTCTGTGA CTGGGATTTGAGAGAAGACTCAATGCTGCATTACTCTGTGA < 41bp 0.818369480909211 0.439065246025061 0.90323263 0.87982166 prediction 0.636738961818422 Functional Loss - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158716356 chr7:158716359 nonsynonymous SNV 0.346 3 24 hm5C_associated_SNPs_52224 0 0 1 0 2 WDR60 chr7:158716424 5'GT 158716424 Upstream 66bp
chr1 48708225 48708225 1 + G T LUSC 48708223 + 48708203 48708243 41 GGAGATATCCGAGAGGCCAGCCGGGGAGTGCCCTGCAGGAG GGAGATATCCGAGAGGCCAGCCTGGGAGTGCCCTGCAGGAG < 41bp 0.818344948641785 0.487858181013244 0.9204235 0.66846144 prediction 0.63668989728357 Functional Loss - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48708223 chr1:48708225 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_52226 0 0 1 0 2 SLC5A9 chr1:48708129 3'AG 48708129 Downstream 97bp
chr1 48708225 48708225 1 + G T LUSC 48708223 + 48708203 48708243 41 GGAGATATCCGAGAGGCCAGCCGGGGAGTGCCCTGCAGGAG GGAGATATCCGAGAGGCCAGCCTGGGAGTGCCCTGCAGGAG < 41bp 0.818344948641785 0.487858181013244 0.9204235 0.66846144 prediction 0.63668989728357 Functional Loss - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48708223 chr1:48708225 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_52226 0 0 1 0 2 SLC5A9 chr1:48708288 5'GT 48708288 Upstream 64bp
chr2 200820884 200820884 1 + G T BRCA 200820881 + 200820861 200820901 41 GGATTCTCCAACCCCATCAACTGGGTTAGGACTCGAATTAA GGATTCTCCAACCCCATCAACTGTGTTAGGACTCGAATTAA < 41bp 0.8758173905563 0.557473768098853 0.9020176 0.39862606 prediction 0.636687244914894 Functional Loss - MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200820881 chr2:200820884 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52227 0 0 1 0 1 MAIP1 chr2:200820971 5'GT 200820971 Upstream 88bp
chrX 1531692 1531692 1 + G T CESC 1531689 + 1531669 1531709 41 TTGTCGTCTGGCCAGTCATGCAGGATCCGGCACAGGACGTA TTGTCGTCTGGCCAGTCATGCAGTATCCGGCACAGGACGTA < 41bp 0.818314010010007 0.452377608082221 0.86939156 0.36072373 prediction 0.636628020020014 Functional Loss - ASMTL ENSG00000169093 CDS Human protein_coding chrX:1531689 chrX:1531692 synonymous SNV . 0 24 hm5C_associated_SNPs_52229 0 0 1 0 2 ASMTL chrX:1531636 3'AG 1531636 Downstream 57bp
chrX 1531692 1531692 1 + G T CESC 1531689 + 1531669 1531709 41 TTGTCGTCTGGCCAGTCATGCAGGATCCGGCACAGGACGTA TTGTCGTCTGGCCAGTCATGCAGTATCCGGCACAGGACGTA < 41bp 0.818314010010007 0.452377608082221 0.86939156 0.36072373 prediction 0.636628020020014 Functional Loss - ASMTL ENSG00000169093 CDS Human antisense chrX:1531689 chrX:1531692 synonymous SNV . 0 24 hm5C_associated_SNPs_52229 0 0 1 0 2 ASMTL-AS1 chrX:1531781 5'GT 1531781 Upstream 90bp
chr12 133277865 133277865 1 + G T UCEC 133277862 + 133277842 133277882 41 GACGCCTCAGCCTTCGCCGCCAAGATGAGGGGGGGCTTCTG GACGCCTCAGCCTTCGCCGCCAATATGAGGGGGGGCTTCTG < 41bp 0.818310612808775 0.445561228254385 0.9357406 0.9102 prediction 0.636621225617551 Functional Loss - PXMP2 ENSG00000176894;ENSG00000256632 CDS Human other chr12:133277862 chr12:133277865 nonsynonymous SNV 0.004 3 24 hm5C_associated_SNPs_52230 0 0 1 0 2 PXMP2 chr12:133277836 3'AG 133277836 Downstream 30bp
chr12 133277865 133277865 1 + G T UCEC 133277862 + 133277842 133277882 41 GACGCCTCAGCCTTCGCCGCCAAGATGAGGGGGGGCTTCTG GACGCCTCAGCCTTCGCCGCCAATATGAGGGGGGGCTTCTG < 41bp 0.818310612808775 0.445561228254385 0.9357406 0.9102 prediction 0.636621225617551 Functional Loss - PXMP2 ENSG00000176894;ENSG00000256632 CDS Human other chr12:133277862 chr12:133277865 nonsynonymous SNV 0.004 3 24 hm5C_associated_SNPs_52230 0 0 1 0 2 PXMP2 chr12:133277955 5'GT 133277955 Upstream 91bp
chr11 124949054 124949054 1 + G T COAD 124949052 + 124949032 124949072 41 GCTCCGTTACTACCTCTCAGCTGGAATGCTGCTCAGTGGCC GCTCCGTTACTACCTCTCAGCTTGAATGCTGCTCAGTGGCC < 41bp 0.829604266667845 0.511327342280403 0.25248343 0.118009746 prediction 0.636553848774884 Functional Loss - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124949052 chr11:124949054 stopgain 0.992 1 23 hm5C_associated_SNPs_52232 0 0 0 0 2 SLC37A2 chr11:124949008 3'AG 124949008 Downstream 47bp
chr11 124949054 124949054 1 + G T COAD 124949052 + 124949032 124949072 41 GCTCCGTTACTACCTCTCAGCTGGAATGCTGCTCAGTGGCC GCTCCGTTACTACCTCTCAGCTTGAATGCTGCTCAGTGGCC < 41bp 0.829604266667845 0.511327342280403 0.25248343 0.118009746 prediction 0.636553848774884 Functional Loss - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124949052 chr11:124949054 stopgain 0.992 1 23 hm5C_associated_SNPs_52232 0 0 0 0 2 SLC37A2 chr11:124949143 5'GT 124949143 Upstream 90bp
chr16 2282245 2282245 1 + G T LUSC 2282243 + 2282223 2282263 41 ACGGTGAGATGGCCGAGGCCCCGGGCAGCCCCCGCCAGCAG ACGGTGAGATGGCCGAGGCCCCTGGCAGCCCCCGCCAGCAG < 41bp 0.818260757689426 0.495169875140861 0.8914573 0.3843457 prediction 0.636521515378851 Functional Loss - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2282243 chr16:2282245 synonymous SNV . 0 23 hm5C_associated_SNPs_52233 0 0 1 0 1 E4F1 chr16:2282172 3'AG 2282172 Downstream 74bp
chr3 195410661 195410661 1 + G T PAAD 195410659 + 195410639 195410679 41 ATGATCACTCCAAGCCCATCCAGGGGCAACAGAAGAAGCCC ATGATCACTCCAAGCCCATCCATGGGCAACAGAAGAAGCCC < 41bp 0.818258213374496 0.499049370021463 0.8807372 0.19102418 prediction 0.636516426748993 Functional Loss - SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195410659 chr3:195410661 . . 0 23 hm5C_associated_SNPs_52235 0 0 1 0 2 SDHAP2 chr3:195410623 3'AG 195410623 Downstream 39bp
chr3 195410661 195410661 1 + G T PAAD 195410659 + 195410639 195410679 41 ATGATCACTCCAAGCCCATCCAGGGGCAACAGAAGAAGCCC ATGATCACTCCAAGCCCATCCATGGGCAACAGAAGAAGCCC < 41bp 0.818258213374496 0.499049370021463 0.8807372 0.19102418 prediction 0.636516426748993 Functional Loss - SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195410659 chr3:195410661 . . 0 23 hm5C_associated_SNPs_52235 0 0 1 0 2 SDHAP2 chr3:195410736 5'GT 195410736 Upstream 76bp
chr6 401457 401457 1 + A C SKCM 401453 + 401433 401473 41 TGCACATCTGCCTGTACTACCGGGAAATCCTCGTGAAGGAG TGCACATCTGCCTGTACTACCGGGCAATCCTCGTGAAGGAG < 41bp 0.877201757873642 0.558963150784795 0.8942206 0.8821511 prediction 0.636477214177693 Functional Loss - IRF4 ENSG00000137265 CDS Human protein_coding chr6:401453 chr6:401457 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_52236 0 0 0 0 1 IRF4 chr6:401424 3'AG 401424 Downstream 34bp
chr14 95033402 95033402 1 + G T LUSC 95033399 + 95033379 95033419 41 TCCGGGTGCCCATGATGCTGCAGGACCAGGAGCATCACTGG TCCGGGTGCCCATGATGCTGCAGTACCAGGAGCATCACTGG < 41bp 0.818165993467566 0.446505564440151 0.28823408 0.118676186 prediction 0.636331986935132 Functional Loss - SERPINA4 ENSG00000100665 CDS Human protein_coding chr14:95033399 chr14:95033402 nonsynonymous SNV 0.014 1 24 hm5C_associated_SNPs_52240 0 0 1 0 1 SERPINA4 chr14:95033307 3'AG 95033307 Downstream 96bp
chr5 176301345 176301345 1 + G T HNSC 176301342 + 176301322 176301362 41 AGGGCAGTCTCTGTCCCCGGCAGGATGGGCCCAGCCCCAAG AGGGCAGTCTCTGTCCCCGGCAGTATGGGCCCAGCCCCAAG < 41bp 0.880767501797261 0.562622997099205 0.77756745 0.38165367 prediction 0.636289009396111 Functional Loss - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176301342 chr5:176301345 nonsynonymous SNV 0.956 4 24 hm5C_associated_SNPs_52241 0 0 0 0 1 UNC5A chr5:176301265 3'AG 176301265 Downstream 81bp
chr4 71654646 71654646 1 + G T STAD 71654643 + 71654623 71654663 41 TGGTATCTCTTCGGCAGCAGCTGGATGACCTCAGAGCTCTC TGGTATCTCTTCGGCAGCAGCTGTATGACCTCAGAGCTCTC < 41bp 0.863351986378368 0.545245588979426 0.5398199 0.3621062 prediction 0.636212794797884 Functional Loss - RUFY3 ENSG00000018189 CDS Human protein_coding chr4:71654643 chr4:71654646 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_52245 0 0 1 0 1 RUFY3 chr4:71654690 5'GT 71654690 Upstream 45bp
chr13 113825987 113825987 1 + G T BLCA 113825984 + 113825964 113826004 41 CACATGCGGTATGACGCGGACGCGGGGGAGAATGACCTGTC CACATGCGGTATGACGCGGACGCTGGGGAGAATGACCTGTC < 41bp 0.873227527454264 0.555135828439503 0.72949183 0.20925236 prediction 0.636183398029522 Functional Loss - PROZ ENSG00000126231 CDS Human protein_coding chr13:113825984 chr13:113825987 synonymous SNV . 0 24 hm5C_associated_SNPs_52247 0 0 0 0 1 PROZ chr13:113825908 3'AG 113825908 Downstream 80bp
chr7 99047957 99047957 1 + G T KIRC 99047954 + 99047934 99047974 41 ATCGACCCCGAGTCCAAGATCAAGGACTGTCCTTGGTATGA ATCGACCCCGAGTCCAAGATCAATGACTGTCCTTGGTATGA < 41bp 0.818080314828433 0.436090953502237 0.8840579 0.1545547 prediction 0.636160629656867 Functional Loss - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99047954 chr7:99047957 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52248 0 0 1 0 2 CPSF4 chr7:99047899 3'AG 99047899 Downstream 59bp
chr7 99047957 99047957 1 + G T KIRC 99047954 + 99047934 99047974 41 ATCGACCCCGAGTCCAAGATCAAGGACTGTCCTTGGTATGA ATCGACCCCGAGTCCAAGATCAATGACTGTCCTTGGTATGA < 41bp 0.818080314828433 0.436090953502237 0.8840579 0.1545547 prediction 0.636160629656867 Functional Loss - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99047954 chr7:99047957 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52248 0 0 1 0 2 CPSF4 chr7:99047994 5'GT 99047994 Upstream 38bp
chr5 5057744 5057744 1 + A C rs145747250 5057740 + 5057720 5057760 41 GCATCCCAGTGGACTCTGCGCTGCATCCCCAGAGTACAGCG GCATCCCAGTGGACTCTGCGCTGCCTCCCCAGAGTACAGCG < 41bp 0.855921706701547 0.537847868067402 0.19589746 0.22229934 prediction 0.636147677268289 Functional Loss - LINC01020 ENSG00000215231 ncRNA_exonic Human lincRNA chr5:5057740 chr5:5057744 . . 0 25 hm5C_associated_SNPs_52249 0 0 0 0 1 LINC01020 chr5:5057675 3'AG 5057675 Downstream 70bp
chr7 75933385 75933385 1 + G T UCEC 75933382 + 75933362 75933402 41 ACCGTGGAGGCCCCCATGCCCAAGCTAGCCACGCAGTCCAA ACCGTGGAGGCCCCCATGCCCAATCTAGCCACGCAGTCCAA < 41bp 0.818061425055463 0.451622179422567 0.30051684 0.024101526 prediction 0.636122850110926 Functional Loss - HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933382 chr7:75933385 nonsynonymous SNV 0.139 2 24 hm5C_associated_SNPs_52251 0 0 0 0 1 HSPB1 chr7:75933301 3'AG 75933301 Downstream 85bp
chrX 11793118 11793118 1 + G T LUAD 11793115 + 11793095 11793135 41 CCAGGTTTTTAGCAGAATACCACGATGACTTCTTCCCAGAG CCAGGTTTTTAGCAGAATACCACTATGACTTCTTCCCAGAG < 41bp 0.818006637764936 0.468203303887454 0.3361308 0.2732193 prediction 0.636013275529873 Functional Loss - MSL3 ENSG00000005302 CDS Human protein_coding chrX:11793115 chrX:11793118 nonsynonymous SNV 0.985 4 24 hm5C_associated_SNPs_52255 0 0 1 0 1 MSL3 chrX:11793099 3'AG 11793099 Downstream 20bp
chr1 156737938 156737938 1 + A C STAD 156737934 + 156737914 156737954 41 CCCTGGCCTCAATCTGCCCCCTCCAATTGGCGGTGCCGGTC CCCTGGCCTCAATCTGCCCCCTCCCATTGGCGGTGCCGGTC < 41bp 0.817948260428663 0.418078700227086 0.9527117 0.018100798 prediction 0.635896520857326 Functional Loss - PRCC ENSG00000143294 CDS Human protein_coding chr1:156737934 chr1:156737938 synonymous SNV . 0 25 hm5C_associated_SNPs_52257 0 0 1 0 1 PRCC chr1:156738031 5'GT 156738031 Upstream 94bp
chr19 17892074 17892074 1 + G T UCEC 17892071 + 17892051 17892091 41 GCACCTGCTGACCCCACAGCCAGGGAGGGCCTGGCAGCCCC GCACCTGCTGACCCCACAGCCAGTGAGGGCCTGGCAGCCCC < 41bp 0.886456338891758 0.568523842502676 0.92941105 0.86502934 prediction 0.635864992778164 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17892071 chr19:17892074 nonsynonymous SNV 0.162 0 24 hm5C_associated_SNPs_52258 0 0 1 0 2 FCHO1 chr19:17892040 3'AG 17892040 Downstream 35bp
chr19 17892074 17892074 1 + G T UCEC 17892071 + 17892051 17892091 41 GCACCTGCTGACCCCACAGCCAGGGAGGGCCTGGCAGCCCC GCACCTGCTGACCCCACAGCCAGTGAGGGCCTGGCAGCCCC < 41bp 0.886456338891758 0.568523842502676 0.92941105 0.86502934 prediction 0.635864992778164 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17892071 chr19:17892074 nonsynonymous SNV 0.162 0 24 hm5C_associated_SNPs_52258 0 0 1 0 2 FCHO1 chr19:17892152 5'GT 17892152 Upstream 79bp
chr17 72351389 72351389 1 + G T STAD 72351386 + 72351366 72351406 41 GTGGTTCTCGACGGGCTACCCGTGGGCCCCGCCTGCCCCAC GTGGTTCTCGACGGGCTACCCGTTGGCCCCGCCTGCCCCAC < 41bp 0.876904084671266 0.558986034587234 0.63050365 0.10181859 prediction 0.635836100168063 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72351386 chr17:72351389 nonsynonymous SNV 0.495 2 24 hm5C_associated_SNPs_52260 0 0 0 0 1 KIF19 chr17:72351321 3'AG 72351321 Downstream 69bp
chr16 31368598 31368598 1 + G T LUSC 31368595 + 31368575 31368615 41 CCTGCGGCCCCACCGTGCACCACGAGTGCGGGAGGAACATG CCTGCGGCCCCACCGTGCACCACTAGTGCGGGAGGAACATG < 41bp 0.872826678653206 0.554933166085963 0.053550184 0.0152902305 prediction 0.635787025134485 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31368595 chr16:31368598 stopgain 0.005 0 24 hm5C_associated_SNPs_52261 0 0 0 0 1 ITGAX chr16:31368574 3'AG 31368574 Downstream 25bp
chr1 155110166 155110166 1 + A C rs541358920 155110162 + 155110142 155110182 41 GGCCTCTTCTGCAGTGTCTTCACCATCAGCATGTACCTCTC GGCCTCTTCTGCAGTGTCTTCACCCTCAGCATGTACCTCTC < 41bp 0.896159995050664 0.578271125767348 0.11194849 0.13513279 prediction 0.63577773856663 Functional Loss - SLC50A1 ENSG00000169241 CDS Human protein_coding chr1:155110162 chr1:155110166 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_52262 0 0 1 1 1 SLC50A1 chr1:155110198 5'GT 155110198 Upstream 33bp
chr19 49090614 49090614 1 + G T BLCA 49090611 + 49090591 49090631 41 TTGTGGGTGCCTTCAGCCTCCCGGACCAGTACAGCCCCCGC TTGTGGGTGCCTTCAGCCTCCCGTACCAGTACAGCCCCCGC < 41bp 0.817801840376109 0.446857428120697 0.2577725 0.049815148 prediction 0.635603680752218 Functional Loss - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49090611 chr19:49090614 nonsynonymous SNV 0.837 3 24 hm5C_associated_SNPs_52267 0 0 0 0 1 SULT2B1 chr19:49090694 5'GT 49090694 Upstream 81bp
chr18 77107832 77107832 1 + G T LUSC 77107829 + 77107809 77107849 41 ACGCAGTTCCGGCACATAGGCAGGCTGCTCATGGTGCACGG ACGCAGTTCCGGCACATAGGCAGTCTGCTCATGGTGCACGG < 41bp 0.817795769267861 0.46501083397765 0.8973993 0.25649905 prediction 0.635591538535722 Functional Loss - ATP9B ENSG00000166377 CDS Human protein_coding chr18:77107829 chr18:77107832 nonsynonymous SNV 0.633 4 24 hm5C_associated_SNPs_52269 0 0 1 0 1 ATP9B chr18:77107925 5'GT 77107925 Upstream 94bp
chr3 37670748 37670748 1 + G T GBM 37670745 + 37670725 37670765 41 CAGCCTCAGTGAGCATGTGACTGGAGAGGAGGAGAGGGAAC CAGCCTCAGTGAGCATGTGACTGTAGAGGAGGAGAGGGAAC < 41bp 0.855744742021406 0.537952066191177 0.32346928 0.2558898 prediction 0.635585351660459 Functional Loss - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37670745 chr3:37670748 nonsynonymous SNV 0.641 0 24 hm5C_associated_SNPs_52270 0 0 0 0 2 ITGA9 chr3:37670678 3'AG 37670678 Downstream 71bp
chr3 37670748 37670748 1 + G T GBM 37670745 + 37670725 37670765 41 CAGCCTCAGTGAGCATGTGACTGGAGAGGAGGAGAGGGAAC CAGCCTCAGTGAGCATGTGACTGTAGAGGAGGAGAGGGAAC < 41bp 0.855744742021406 0.537952066191177 0.32346928 0.2558898 prediction 0.635585351660459 Functional Loss - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37670745 chr3:37670748 nonsynonymous SNV 0.641 0 24 hm5C_associated_SNPs_52270 0 0 0 0 2 ITGA9 chr3:37670827 5'GT 37670827 Upstream 80bp
chr6 28327678 28327678 1 + G T LUAD 28327675 + 28327655 28327695 41 CTGCCGGGGAATCTGCAGAGCTGGGTGCGGGAGCAGCATCC CTGCCGGGGAATCTGCAGAGCTGTGTGCGGGAGCAGCATCC < 41bp 0.880686182831858 0.562920447353482 0.5988024 0.14659321 prediction 0.635531470956752 Functional Loss - ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28327675 chr6:28327678 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_52272 0 0 0 0 1 ZKSCAN3 chr6:28327765 5'GT 28327765 Upstream 88bp
chr6 167708186 167708186 1 + G T STAD 167708184 + 167708164 167708204 41 GTGGGCAACTTCTTCGCCAGCTGGTACGCAGCCACCACCCC GTGGGCAACTTCTTCGCCAGCTTGTACGCAGCCACCACCCC < 41bp 0.830421349078972 0.51266105186553 0.12115088 0.14763123 prediction 0.635520594426884 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167708184 chr6:167708186 nonsynonymous SNV 0.926 2 23 hm5C_associated_SNPs_52273 0 0 0 0 1 UNC93A chr6:167708186 5'GT 167708186 Upstream 1bp
chrX 89177112 89177112 1 + G T HNSC 89177110 + 89177090 89177130 41 GGCCGCTGCGGACGGCCCGGCTGAGACCCAAAGCCCGGTGG GGCCGCTGCGGACGGCCCGGCTTAGACCCAAAGCCCGGTGG < 41bp 0.817755815119037 0.497971328067111 0.20887259 0.081537515 prediction 0.635511630238074 Functional Loss - TGIF2LX ENSG00000153779 CDS Human protein_coding chrX:89177110 chrX:89177112 stopgain 0.003 0 23 hm5C_associated_SNPs_52274 0 0 0 0 1 TGIF2LX chrX:89177064 3'AG 89177064 Downstream 49bp
chr4 187192858 187192858 1 + A C LUAD 187192854 + 187192834 187192874 41 GCCAAGTACTGCCAGGTAGTCTGCACTTACCACCCAAGATG GCCAAGTACTGCCAGGTAGTCTGCCCTTACCACCCAAGATG < 41bp 0.898091570845114 0.58036370712619 0.06137967 0.08077809 prediction 0.635455727437848 Functional Loss - F11 ENSG00000088926 CDS Human protein_coding chr4:187192854 chr4:187192858 nonsynonymous SNV 0.125 5 25 hm5C_associated_SNPs_52277 1 0 0 0 2 F11 chr4:187192763 3'AG 187192763 Downstream 96bp
chr4 187192858 187192858 1 + A C LUAD 187192854 + 187192834 187192874 41 GCCAAGTACTGCCAGGTAGTCTGCACTTACCACCCAAGATG GCCAAGTACTGCCAGGTAGTCTGCCCTTACCACCCAAGATG < 41bp 0.898091570845114 0.58036370712619 0.06137967 0.08077809 prediction 0.635455727437848 Functional Loss - F11 ENSG00000088926 CDS Human protein_coding chr4:187192854 chr4:187192858 nonsynonymous SNV 0.125 5 25 hm5C_associated_SNPs_52277 1 0 0 0 2 F11 chr4:187192925 5'GT 187192925 Upstream 68bp
chr17 73663550 73663550 1 + G T SARC 73663548 + 73663528 73663568 41 GCTGGAATCGAGGCGGTGGGCAGCGCGGCTGGTAAGGCCCA GCTGGAATCGAGGCGGTGGGCATCGCGGCTGGTAAGGCCCA < 41bp 0.831047084590564 0.513333823514689 0.66472834 0.6193209 prediction 0.635426522151748 Functional Loss - SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73663548 chr17:73663550 nonsynonymous SNV 0.990 1 23 hm5C_associated_SNPs_52278 0 0 1 0 1 SAP30BP chr17:73663558 5'GT 73663558 Upstream 9bp
chr10 127693476 127693476 1 + G T UCEC 127693473 + 127693453 127693493 41 TCTAATGCTGGCGTGCTATGCGGGACACCTAGATGTTGTGA TCTAATGCTGGCGTGCTATGCGGTACACCTAGATGTTGTGA < 41bp 0.817706293866024 0.462565397497894 0.9090065 0.6480802 prediction 0.635412587732048 Functional Loss - FANK1 ENSG00000203780 CDS Human protein_coding chr10:127693473 chr10:127693476 nonsynonymous SNV 0.963 4 24 hm5C_associated_SNPs_52279 0 0 0 0 1 FANK1 chr10:127693453 3'AG 127693453 Downstream 24bp
chrX 117530973 117530973 1 + G T LUAD 117530970 + 117530950 117530990 41 AATGATTAAGAACCTGGATACTGGAGAAGAAATACCTTTGA AATGATTAAGAACCTGGATACTGTAGAAGAAATACCTTTGA < 41bp 0.817696606729195 0.475131584624715 0.106562704 0.025037438 prediction 0.635393213458391 Functional Loss - WDR44 ENSG00000131725 CDS Human protein_coding chrX:117530970 chrX:117530973 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_52281 0 0 1 0 2 WDR44 chrX:117530933 3'AG 117530933 Downstream 41bp
chrX 117530973 117530973 1 + G T LUAD 117530970 + 117530950 117530990 41 AATGATTAAGAACCTGGATACTGGAGAAGAAATACCTTTGA AATGATTAAGAACCTGGATACTGTAGAAGAAATACCTTTGA < 41bp 0.817696606729195 0.475131584624715 0.106562704 0.025037438 prediction 0.635393213458391 Functional Loss - WDR44 ENSG00000131725 CDS Human protein_coding chrX:117530970 chrX:117530973 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_52281 0 0 1 0 2 WDR44 chrX:117531069 5'GT 117531069 Upstream 97bp
chr21 38877665 38877665 1 + G T SARC 38877662 + 38877642 38877682 41 AGGACCTGGTGGGCGACGTGCTGGGGAGTCAGGTCATACGG AGGACCTGGTGGGCGACGTGCTGTGGAGTCAGGTCATACGG < 41bp 0.817693833392295 0.477972981098228 0.72879434 0.40826076 prediction 0.63538766678459 Functional Loss - DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38877662 chr21:38877665 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52282 0 0 1 0 1 DYRK1A chr21:38877586 3'AG 38877586 Downstream 80bp
chr20 37353670 37353670 1 + G T UCEC 37353668 + 37353648 37353688 41 CGCCCTCCGGCTCCAAGGACCAGGTGGGAGGTGGTGGCGAA CGCCCTCCGGCTCCAAGGACCATGTGGGAGGTGGTGGCGAA < 41bp 0.829335897977957 0.511658235800747 0.9084437 0.6993899 prediction 0.635355324354421 Functional Loss - SLC32A1 ENSG00000101438 CDS Human protein_coding chr20:37353668 chr20:37353670 nonsynonymous SNV 0.994 0 23 hm5C_associated_SNPs_52284 0 0 0 0 1 SLC32A1 chr20:37353757 5'GT 37353757 Upstream 88bp
chr10 12148394 12148394 1 + A C LUAD 12148390 + 12148370 12148410 41 CATCTTTGACACATTCATCTCTGGAGGTTGGTGTCAGCGTA CATCTTTGACACATTCATCTCTGGCGGTTGGTGTCAGCGTA < 41bp 0.886973112768432 0.569303262543765 0.23853207 0.22560358 prediction 0.635339700449334 Functional Loss - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12148390 chr10:12148394 synonymous SNV . 0 25 hm5C_associated_SNPs_52285 0 0 0 0 1 DHTKD1 chr10:12148395 5'GT 12148395 Upstream 2bp
chrX 49103250 49103250 1 + A C COAD 49103246 + 49103226 49103266 41 AGCAACTGACTGAGCATCTGCGCCAAAGCTGGGGCCTGCTT AGCAACTGACTGAGCATCTGCGCCCAAGCTGGGGCCTGCTT < 41bp 0.817654911842996 0.40624345585805 0.3312266 0.24852374 prediction 0.635309823685992 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49103246 chrX:49103250 nonsynonymous SNV 0.718 3 25 hm5C_associated_SNPs_52288 0 0 1 0 1 CCDC22 chrX:49103192 3'AG 49103192 Downstream 59bp
chr11 113264424 113264424 1 + G T UCEC 113264422 + 113264402 113264442 41 TTGGCCATGAACTTCCTGCACAGCATTAAGCCGCCTCTGCT TTGGCCATGAACTTCCTGCACATCATTAAGCCGCCTCTGCT < 41bp 0.817636219504234 0.499233589648519 0.22861987 0.08813596 prediction 0.635272439008467 Functional Loss - ANKK1 ENSG00000170209 CDS Human protein_coding chr11:113264422 chr11:113264424 nonsynonymous SNV 0.974 3 23 hm5C_associated_SNPs_52289 0 0 0 0 1 ANKK1 chr11:113264497 5'GT 113264497 Upstream 74bp
chr13 103492015 103492015 1 + G T UCEC 103492012 + 103491992 103492032 41 TTCCATTTGGAACCATTAGACAAGAATCACAACCTCCAACA TTCCATTTGGAACCATTAGACAATAATCACAACCTCCAACA < 41bp 0.848855224829073 0.531232342650193 0.16330937 0.06577501 prediction 0.635245764357762 Functional Loss - BIVM;BIVM-ERCC5 ENSG00000134897;ENSG00000270181 CDS Human other chr13:103492012 chr13:103492015 stopgain 1.000 0 24 hm5C_associated_SNPs_52291 0 0 1 0 1 BIVM;BIVM-ERCC5 chr13:103491922 3'AG 103491922 Downstream 94bp
chr17 8167564 8167564 1 + G T CESC 8167562 + 8167542 8167582 41 GACGATCGGGAGTGTCCTGTCAGAAGAAATGGCCAGGGGGA GACGATCGGGAGTGTCCTGTCATAAGAAATGGCCAGGGGGA < 41bp 0.832106188503338 0.514515817232209 0.92328703 0.48888674 prediction 0.635180742542257 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8167562 chr17:8167564 nonsynonymous SNV 0.022 0 23 hm5C_associated_SNPs_52293 0 0 1 0 1 PFAS chr17:8167530 3'AG 8167530 Downstream 35bp
chr6 158349731 158349731 1 + G T LUSC 158349729 + 158349709 158349749 41 GGAGCACTGGAAGCGCTGCACGGGCCGTAAGTCCACTCCTC GGAGCACTGGAAGCGCTGCACGTGCCGTAAGTCCACTCCTC < 41bp 0.826857183624426 0.509312335427565 0.8340769 0.35299617 prediction 0.635089696393722 Functional Loss - SNX9 ENSG00000130340 CDS Human protein_coding chr6:158349729 chr6:158349731 nonsynonymous SNV 0.294 4 23 hm5C_associated_SNPs_52296 0 0 1 0 1 SNX9 chr6:158349734 5'GT 158349734 Upstream 4bp
chr4 4317667 4317667 1 + G T LUAD 4317665 + 4317645 4317685 41 AAAGCACAGAATTCGGCACACGGGGGAGCGGCCTTACAGCT AAAGCACAGAATTCGGCACACGTGGGAGCGGCCTTACAGCT < 41bp 0.821241834992138 0.503712911868169 0.9224871 0.8810644 prediction 0.635057846247939 Functional Loss - ZBTB49 ENSG00000168826 CDS Human protein_coding chr4:4317665 chr4:4317667 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52298 0 0 0 0 1 ZBTB49 chr4:4317697 5'GT 4317697 Upstream 31bp
chr19 50957559 50957559 1 + G T LUAD 50957556 + 50957536 50957576 41 CCGGAGGCTGTGCGCATCACCTCGGTTGGAGAGGATTGGGC CCGGAGGCTGTGCGCATCACCTCTGTTGGAGAGGATTGGGC < 41bp 0.817515876534372 0.443403319677105 0.4383152 0.04299873 prediction 0.635031753068745 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957556 chr19:50957559 synonymous SNV . 0 24 hm5C_associated_SNPs_52300 0 0 0 0 2 MYBPC2 chr19:50957522 3'AG 50957522 Downstream 38bp
chr19 50957559 50957559 1 + G T LUAD 50957556 + 50957536 50957576 41 CCGGAGGCTGTGCGCATCACCTCGGTTGGAGAGGATTGGGC CCGGAGGCTGTGCGCATCACCTCTGTTGGAGAGGATTGGGC < 41bp 0.817515876534372 0.443403319677105 0.4383152 0.04299873 prediction 0.635031753068745 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957556 chr19:50957559 synonymous SNV . 0 24 hm5C_associated_SNPs_52300 0 0 0 0 2 MYBPC2 chr19:50957626 5'GT 50957626 Upstream 68bp
chr15 44092917 44092917 1 + G T SARC 44092915 + 44092895 44092935 41 ACGGAAACATGACAGCGGTGCGGCGGACTTGGAGCGGGTCA ACGGAAACATGACAGCGGTGCGTCGGACTTGGAGCGGGTCA < 41bp 0.817483853081645 0.496600856665194 0.8901902 0.26239392 prediction 0.634967706163289 Functional Loss - HYPK ENSG00000140264;ENSG00000242028 CDS Human other chr15:44092915 chr15:44092917 nonsynonymous SNV 0.989 3 23 hm5C_associated_SNPs_52303 0 0 1 0 1 HYPK chr15:44092982 5'GT 44092982 Upstream 66bp
chr19 13056794 13056794 1 + A C LIHC 13056790 + 13056770 13056810 41 TCACCATCACGCTCAAAACGCTGCAGCAGCAGACCTTCAAG TCACCATCACGCTCAAAACGCTGCCGCAGCAGACCTTCAAG < 41bp 0.872232464427481 0.554754922413691 0.20372626 0.19754356 prediction 0.634955084027581 Functional Loss - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13056790 chr19:13056794 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_52304 0 0 1 0 1 RAD23A chr19:13056834 5'GT 13056834 Upstream 41bp
chr19 39760615 39760615 1 + G T CESC 39760612 + 39760592 39760632 41 ACCTCTTCCGCCTCCTCACGCGAGACCTGAATTGTGTTGCC ACCTCTTCCGCCTCCTCACGCGATACCTGAATTGTGTTGCC < 41bp 0.873190249159563 0.55579211121777 0.42908013 0.17483938 prediction 0.634796275883586 Functional Loss - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39760612 chr19:39760615 nonsynonymous SNV 0.131 4 24 hm5C_associated_SNPs_52307 0 0 0 0 1 IFNL2 chr19:39760555 3'AG 39760555 Downstream 61bp
chr10 104486811 104486811 1 + G T SARC 104486809 + 104486789 104486829 41 TGCCAAGAAGCTGTATGACTCGGCCTTCCACCCCGACACTG TGCCAAGAAGCTGTATGACTCGTCCTTCCACCCCGACACTG < 41bp 0.822875601279531 0.505487075682218 0.8915373 0.0385862 prediction 0.634777051194627 Functional Loss - SFXN2 ENSG00000156398 CDS Human protein_coding chr10:104486809 chr10:104486811 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_52308 0 0 1 0 1 SFXN2 chr10:104486744 3'AG 104486744 Downstream 68bp
chr6 167708048 167708048 1 + G T LGG 167708046 + 167708026 167708066 41 GGCCTGGGTGTCACAGCGCTCAGCACCCTCTATGGAGGCAT GGCCTGGGTGTCACAGCGCTCATCACCCTCTATGGAGGCAT < 41bp 0.817376381805464 0.492294962636356 0.23895183 0.057233095 prediction 0.634752763610927 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167708046 chr6:167708048 nonsynonymous SNV 0.092 3 23 hm5C_associated_SNPs_52309 0 0 0 0 1 UNC93A chr6:167708005 3'AG 167708005 Downstream 44bp
chr2 158980300 158980300 1 + G T LUAD 158980298 + 158980278 158980318 41 GGAGCACTGTGCTCCTTTTCCAGAGAAAAAAAGTTAGACTA GGAGCACTGTGCTCCTTTTCCATAGAAAAAAAGTTAGACTA < 41bp 0.817339407696287 0.495975339201039 0.919201 0.2598006 prediction 0.634678815392574 Functional Loss - UPP2 ENSG00000007001 CDS Human protein_coding chr2:158980298 chr2:158980300 nonsynonymous SNV 0.976 1 23 hm5C_associated_SNPs_52312 0 0 0 0 1 UPP2 chr2:158980261 3'AG 158980261 Downstream 40bp
chr11 61015981 61015981 1 + G T LUAD 61015978 + 61015958 61015998 41 AACTGGGTGCCTGTTACCGTCGAGGGTTACTGGCAGATCAC AACTGGGTGCCTGTTACCGTCGATGGTTACTGGCAGATCAC < 41bp 0.817331722639416 0.440946538779121 0.85981125 0.19269273 prediction 0.634663445278831 Functional Loss - PGA5 ENSG00000229183;ENSG00000256713 CDS Human other chr11:61015978 chr11:61015981 nonsynonymous SNV 0.857 0 24 hm5C_associated_SNPs_52313 0 0 0 0 2 PGA5 chr11:61015891 3'AG 61015891 Downstream 91bp
chr11 61015981 61015981 1 + G T LUAD 61015978 + 61015958 61015998 41 AACTGGGTGCCTGTTACCGTCGAGGGTTACTGGCAGATCAC AACTGGGTGCCTGTTACCGTCGATGGTTACTGGCAGATCAC < 41bp 0.817331722639416 0.440946538779121 0.85981125 0.19269273 prediction 0.634663445278831 Functional Loss - PGA5 ENSG00000229183;ENSG00000256713 CDS Human other chr11:61015978 chr11:61015981 nonsynonymous SNV 0.857 0 24 hm5C_associated_SNPs_52313 0 0 0 0 2 PGA5 chr11:61016007 5'GT 61016007 Upstream 27bp
chr11 124910534 124910534 1 + G T UCEC 124910531 + 124910511 124910551 41 CATCAATTCCTGTGATGTCCCTGGGGGTAATTCAACTCTTC CATCAATTCCTGTGATGTCCCTGTGGGTAATTCAACTCTTC < 41bp 0.817295492516293 0.464456056604221 0.64978874 0.041138023 prediction 0.634590985032586 Functional Loss - CCDC15 ENSG00000149548 CDS Human protein_coding chr11:124910531 chr11:124910534 nonsynonymous SNV 0.027 1 24 hm5C_associated_SNPs_52315 0 0 0 0 1 CCDC15 chr11:124910486 3'AG 124910486 Downstream 49bp
chr1 65143906 65143906 1 + G T LUSC 65143903 + 65143883 65143923 41 ACAGTGATGGAAAGACTCACCTGGACAAACCCTACTGTGCC ACAGTGATGGAAAGACTCACCTGTACAAACCCTACTGTGCC < 41bp 0.817292637130258 0.469607576528111 0.43616217 0.31174058 prediction 0.634585274260517 Functional Loss - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65143903 chr1:65143906 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52316 0 0 1 0 2 CACHD1 chr1:65143842 3'AG 65143842 Downstream 65bp
chr1 65143906 65143906 1 + G T LUSC 65143903 + 65143883 65143923 41 ACAGTGATGGAAAGACTCACCTGGACAAACCCTACTGTGCC ACAGTGATGGAAAGACTCACCTGTACAAACCCTACTGTGCC < 41bp 0.817292637130258 0.469607576528111 0.43616217 0.31174058 prediction 0.634585274260517 Functional Loss - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65143903 chr1:65143906 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52316 0 0 1 0 2 CACHD1 chr1:65143993 5'GT 65143993 Upstream 88bp
chr1 236908035 236908035 1 + G T LUSC 236908033 + 236908013 236908053 41 AGAGCGACCTGGCAGCGCACCAGGACCGCGTGGAGCAGATC AGAGCGACCTGGCAGCGCACCATGACCGCGTGGAGCAGATC < 41bp 0.837388749582731 0.520105487156036 0.8689898 0.050944507 prediction 0.634566524853389 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236908033 chr1:236908035 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_52317 0 0 0 0 1 ACTN2 chr1:236908076 5'GT 236908076 Upstream 42bp
chr2 162279953 162279953 1 + G T LUAD 162279951 + 162279931 162279971 41 GCCGCGCTCGCAGATCGTGCCCGGGGCCCGCTACGCCATGG GCCGCGCTCGCAGATCGTGCCCTGGGCCCGCTACGCCATGG < 41bp 0.817281674139558 0.489012264091944 0.9351363 0.0838511 prediction 0.634563348279116 Functional Loss - TBR1 ENSG00000136535 CDS Human protein_coding chr2:162279951 chr2:162279953 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52318 0 0 1 0 1 TBR1 chr2:162279880 3'AG 162279880 Downstream 74bp
chr12 6426547 6426547 1 + G T GBM 6426544 + 6426524 6426564 41 TGGCTTACGCCCGAGAACAGCAAGAAACTAACCCTCTCTTC TGGCTTACGCCCGAGAACAGCAATAAACTAACCCTCTCTTC < 41bp 0.817280399416981 0.43814345450333 0.35042393 0.24636802 prediction 0.634560798833962 Functional Loss - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6426544 chr12:6426547 stopgain 0.970 0 24 hm5C_associated_SNPs_52319 0 0 0 0 2 PLEKHG6 chr12:6426469 3'AG 6426469 Downstream 79bp
chr12 6426547 6426547 1 + G T GBM 6426544 + 6426524 6426564 41 TGGCTTACGCCCGAGAACAGCAAGAAACTAACCCTCTCTTC TGGCTTACGCCCGAGAACAGCAATAAACTAACCCTCTCTTC < 41bp 0.817280399416981 0.43814345450333 0.35042393 0.24636802 prediction 0.634560798833962 Functional Loss - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6426544 chr12:6426547 stopgain 0.970 0 24 hm5C_associated_SNPs_52319 0 0 0 0 2 PLEKHG6 chr12:6426579 5'GT 6426579 Upstream 33bp
chr11 64789292 64789292 1 + G T UCEC 64789289 + 64789269 64789309 41 TGCCGGGCATCGACTGGCTCCTGGATGACATTTCCAGCCGC TGCCGGGCATCGACTGGCTCCTGTATGACATTTCCAGCCGC < 41bp 0.817262722392942 0.465379883751326 0.49629486 0.04230514 prediction 0.634525444785884 Functional Loss - ARL2 ENSG00000213465 CDS Human protein_coding chr11:64789289 chr11:64789292 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_52321 0 0 1 0 1 ARL2 chr11:64789193 3'AG 64789193 Downstream 100bp
chr5 140021484 140021484 1 + G T SARC 140021482 + 140021462 140021502 41 GGCAGCATGCGGACCCTGGTCGGGCTCCTGACCAGCAACCA GGCAGCATGCGGACCCTGGTCGTGCTCCTGACCAGCAACCA < 41bp 0.825158205008936 0.507905769437873 0.7920431 0.20347431 prediction 0.634504871142126 Functional Loss - TMCO6 ENSG00000113119 CDS Human protein_coding chr5:140021482 chr5:140021484 nonsynonymous SNV 0.906 2 23 hm5C_associated_SNPs_52323 0 0 1 0 1 TMCO6 chr5:140021455 3'AG 140021455 Downstream 30bp
chr11 119043093 119043093 1 + G T SARC 119043090 + 119043070 119043110 41 CGTATCCCCTTCCTGATCCACTGGAGTTGGCCCCTTCAAGG CGTATCCCCTTCCTGATCCACTGTAGTTGGCCCCTTCAAGG < 41bp 0.817244979021046 0.440910568914565 0.8828165 0.48259038 prediction 0.634489958042091 Functional Loss - NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119043090 chr11:119043093 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_52325 0 0 0 0 2 NLRX1 chr11:119043065 3'AG 119043065 Downstream 29bp
chr11 119043093 119043093 1 + G T SARC 119043090 + 119043070 119043110 41 CGTATCCCCTTCCTGATCCACTGGAGTTGGCCCCTTCAAGG CGTATCCCCTTCCTGATCCACTGTAGTTGGCCCCTTCAAGG < 41bp 0.817244979021046 0.440910568914565 0.8828165 0.48259038 prediction 0.634489958042091 Functional Loss - NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119043090 chr11:119043093 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_52325 0 0 0 0 2 NLRX1 chr11:119043134 5'GT 119043134 Upstream 42bp
chr9 35853153 35853153 1 + G T BLCA 35853150 + 35853130 35853170 41 TTCTCTAGGTGCTGTATTTGCTGGGAGCTATGCTGCTGTCC TTCTCTAGGTGCTGTATTTGCTGTGAGCTATGCTGCTGTCC < 41bp 0.882756145824749 0.565522793100795 0.85705525 0.33704734 prediction 0.634466705447909 Functional Loss - TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35853150 chr9:35853153 stopgain 0.998 0 24 hm5C_associated_SNPs_52326 0 0 0 0 1 TMEM8B chr9:35853138 3'AG 35853138 Downstream 16bp
chr19 54649779 54649779 1 + G T LUSC 54649776 + 54649756 54649796 41 CCCAGCCCAGCCAACTGTACCACGGTGAGGCCCCACGGGAC CCCAGCCCAGCCAACTGTACCACTGTGAGGCCCCACGGGAC < 41bp 0.817229408040437 0.44094910846467 0.43363988 0.17648387 prediction 0.634458816080875 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54649776 chr19:54649779 synonymous SNV . 0 24 hm5C_associated_SNPs_52327 0 0 1 0 1 CNOT3 chr19:54649779 5'GT 54649779 Upstream 1bp
chr7 36194773 36194773 1 + G T LUAD 36194770 + 36194750 36194790 41 GTGGAGAAGGCCAACAACCCCGGGGTGCGAGAGGTGGTGTG GTGGAGAAGGCCAACAACCCCGGTGTGCGAGAGGTGGTGTG < 41bp 0.872890000893573 0.555666860357897 0.9005841 0.656116 prediction 0.634446281071353 Functional Loss - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36194770 chr7:36194773 synonymous SNV . 0 24 hm5C_associated_SNPs_52331 0 0 1 0 1 EEPD1 chr7:36194811 5'GT 36194811 Upstream 39bp
chr22 18063881 18063881 1 + G T UCEC 18063878 + 18063858 18063898 41 GTGTTCCCCATCGACTTGGCCAAGACTCGCCTGCAGAACCA GTGTTCCCCATCGACTTGGCCAATACTCGCCTGCAGAACCA < 41bp 0.817220187684683 0.440784571238295 0.18581799 0.1142014 prediction 0.634440375369367 Functional Loss - SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18063878 chr22:18063881 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_52332 0 0 0 0 2 SLC25A18 chr22:18063803 3'AG 18063803 Downstream 79bp
chr22 18063881 18063881 1 + G T UCEC 18063878 + 18063858 18063898 41 GTGTTCCCCATCGACTTGGCCAAGACTCGCCTGCAGAACCA GTGTTCCCCATCGACTTGGCCAATACTCGCCTGCAGAACCA < 41bp 0.817220187684683 0.440784571238295 0.18581799 0.1142014 prediction 0.634440375369367 Functional Loss - SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18063878 chr22:18063881 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_52332 0 0 0 0 2 SLC25A18 chr22:18063925 5'GT 18063925 Upstream 45bp
chr11 76826599 76826599 1 + G T CESC 76826596 + 76826576 76826616 41 ATGATCCGCCTGCGCAACCCCTGGGGCGAGCGGGAGTGGAA ATGATCCGCCTGCGCAACCCCTGTGGCGAGCGGGAGTGGAA < 41bp 0.817211885352624 0.443763602711157 0.7561157 0.37086928 prediction 0.634423770705249 Functional Loss - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76826596 chr11:76826599 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52334 0 0 0 0 1 CAPN5 chr11:76826634 5'GT 76826634 Upstream 36bp
chr19 45452429 45452429 1 + A C rs5126 45452425 + 45452405 45452445 41 TTTCTCCCCAGGGACTTGTACAGCAAAAGCACAGCAGCCAT TTTCTCCCCAGGGACTTGTACAGCCAAAGCACAGCAGCCAT < 41bp 0.817211359175782 0.437582036563574 0.15463659 0.20533395 prediction 0.634422718351564 Functional Loss - APOC2 ENSG00000224916;ENSG00000234906 CDS Human other chr19:45452425 chr19:45452429 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_52335 1 0 1 0 1 APOC2 chr19:45452416 3'AG 45452416 Downstream 14bp
chrX 47230094 47230094 1 + G T SARC 47230091 + 47230071 47230111 41 CCAGCTAATGGGACATCACCCCAGAGATTCCCTGCCCTGAT CCAGCTAATGGGACATCACCCCATAGATTCCCTGCCCTGAT < 41bp 0.817175200354401 0.461943628495029 0.8333521 0.17588487 prediction 0.634350400708802 Functional Loss - ZNF157 ENSG00000147117 CDS Human protein_coding chrX:47230091 chrX:47230094 nonsynonymous SNV 0.985 2 24 hm5C_associated_SNPs_52338 0 0 0 0 1 ZNF157 chrX:47230139 5'GT 47230139 Upstream 46bp
chr1 11894362 11894362 1 + G T KIRC 11894359 + 11894339 11894379 41 GGTGCAGCGGCTTTCTTGGGCGGGGTGGTCCGCATGACCAT GGTGCAGCGGCTTTCTTGGGCGGTGTGGTCCGCATGACCAT < 41bp 0.886809286443033 0.569635867561472 0.6486671 0.19406897 prediction 0.634346837763123 Functional Loss - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11894359 chr1:11894362 synonymous SNV . 0 24 hm5C_associated_SNPs_52339 0 0 1 0 2 CLCN6 chr1:11894293 3'AG 11894293 Downstream 70bp
chr1 11894362 11894362 1 + G T KIRC 11894359 + 11894339 11894379 41 GGTGCAGCGGCTTTCTTGGGCGGGGTGGTCCGCATGACCAT GGTGCAGCGGCTTTCTTGGGCGGTGTGGTCCGCATGACCAT < 41bp 0.886809286443033 0.569635867561472 0.6486671 0.19406897 prediction 0.634346837763123 Functional Loss - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11894359 chr1:11894362 synonymous SNV . 0 24 hm5C_associated_SNPs_52339 0 0 1 0 2 CLCN6 chr1:11894452 5'GT 11894452 Upstream 91bp
chr19 42794466 42794466 1 + G T LUSC 42794464 + 42794444 42794484 41 CCCACTGGACCCTGAGCCCCCAGGGCCCCCGGATCCTCCTG CCCACTGGACCCTGAGCCCCCATGGCCCCCGGATCCTCCTG < 41bp 0.817173365242069 0.479900878652987 0.90229344 0.33231354 prediction 0.634346730484137 Functional Loss - CIC ENSG00000079432 CDS Human protein_coding chr19:42794464 chr19:42794466 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52340 0 0 1 0 1 CIC chr19:42794385 3'AG 42794385 Downstream 82bp
chr12 56625323 56625323 1 + G T COAD 56625321 + 56625301 56625341 41 GACTGGACGGGCTGCATCCCCAGCTGCAGACAATTCCACAC GACTGGACGGGCTGCATCCCCATCTGCAGACAATTCCACAC < 41bp 0.817159900523814 0.497773912564576 0.42507547 0.19679096 prediction 0.634319801047628 Functional Loss - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56625321 chr12:56625323 nonsynonymous SNV 0.043 0 23 hm5C_associated_SNPs_52342 0 0 1 0 2 SLC39A5 chr12:56625250 3'AG 56625250 Downstream 74bp
chr12 56625323 56625323 1 + G T COAD 56625321 + 56625301 56625341 41 GACTGGACGGGCTGCATCCCCAGCTGCAGACAATTCCACAC GACTGGACGGGCTGCATCCCCATCTGCAGACAATTCCACAC < 41bp 0.817159900523814 0.497773912564576 0.42507547 0.19679096 prediction 0.634319801047628 Functional Loss - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56625321 chr12:56625323 nonsynonymous SNV 0.043 0 23 hm5C_associated_SNPs_52342 0 0 1 0 2 SLC39A5 chr12:56625345 5'GT 56625345 Upstream 23bp
chr10 50854680 50854680 1 + G T PAAD 50854678 + 50854658 50854698 41 CTCCTTCACGGCGGAGGCTACAGCAAGAACGGGGCCAATCG CTCCTTCACGGCGGAGGCTACATCAAGAACGGGGCCAATCG < 41bp 0.82343297431574 0.506285702015155 0.44699606 0.20161444 prediction 0.63429454460117 Functional Loss - CHAT ENSG00000070748 CDS Human protein_coding chr10:50854678 chr10:50854680 nonsynonymous SNV 0.811 2 23 hm5C_associated_SNPs_52343 0 0 0 0 1 CHAT chr10:50854720 5'GT 50854720 Upstream 41bp
chr10 134158049 134158049 1 + G T PRAD 134158046 + 134158026 134158066 41 TGAACCTAAGACACTGCCCTCTGGAATTCCCTCCTCAGCTC TGAACCTAAGACACTGCCCTCTGTAATTCCCTCCTCAGCTC < 41bp 0.817144106364582 0.452865696936338 0.36359158 0.08529043 prediction 0.634288212729164 Functional Loss - LRRC27 ENSG00000148814 CDS Human protein_coding chr10:134158046 chr10:134158049 stopgain 0.975 1 24 hm5C_associated_SNPs_52344 0 0 1 0 1 LRRC27 chr10:134158002 3'AG 134158002 Downstream 48bp
chr1 168549392 168549392 1 + G T UCEC 168549389 + 168549369 168549409 41 AGAATCAAGACCTACACCATCACGGAAGGCTCCTTGAGAGC AGAATCAAGACCTACACCATCACTGAAGGCTCCTTGAGAGC < 41bp 0.873762629910653 0.556650441279485 0.26086646 0.087670505 prediction 0.634224377262334 Functional Loss - XCL1 ENSG00000143184 CDS Human protein_coding chr1:168549389 chr1:168549392 synonymous SNV . 0 24 hm5C_associated_SNPs_52347 0 0 0 0 2 XCL1 chr1:168549301 3'AG 168549301 Downstream 92bp
chr1 168549392 168549392 1 + G T UCEC 168549389 + 168549369 168549409 41 AGAATCAAGACCTACACCATCACGGAAGGCTCCTTGAGAGC AGAATCAAGACCTACACCATCACTGAAGGCTCCTTGAGAGC < 41bp 0.873762629910653 0.556650441279485 0.26086646 0.087670505 prediction 0.634224377262334 Functional Loss - XCL1 ENSG00000143184 CDS Human protein_coding chr1:168549389 chr1:168549392 synonymous SNV . 0 24 hm5C_associated_SNPs_52347 0 0 0 0 2 XCL1 chr1:168549415 5'GT 168549415 Upstream 24bp
chr22 41865186 41865186 1 + G T LUAD 41865184 + 41865164 41865204 41 GCCTACTGGTGACTCGGCTGCAGGTGAGCGAGCTCAGGGAC GCCTACTGGTGACTCGGCTGCATGTGAGCGAGCTCAGGGAC < 41bp 0.827275302006288 0.510168595258631 0.9100392 0.323968 prediction 0.634213413495313 Functional Loss - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41865184 chr22:41865186 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_52348 0 0 1 0 1 ACO2 chr22:41865186 5'GT 41865186 Upstream 1bp
chr20 19870252 19870252 1 + G T LUSC 19870250 + 19870230 19870270 41 AGCCTCGCTGGGGGAAATGACAGCTTGGACCATGGGCGCCC AGCCTCGCTGGGGGAAATGACATCTTGGACCATGGGCGCCC < 41bp 0.823077994938724 0.505973572834074 0.30395293 0.17267036 prediction 0.6342088442093 Functional Loss - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19870250 chr20:19870252 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_52349 0 0 0 0 1 RIN2 chr20:19870302 5'GT 19870302 Upstream 51bp
chr11 9430143 9430143 1 + G T UCEC 9430140 + 9430120 9430160 41 AAGAAGATCGCCATTGTATTCGAGAAAATATTGTAGAAGCC AAGAAGATCGCCATTGTATTCGATAAAATATTGTAGAAGCC < 41bp 0.817101242745149 0.482138950402232 0.21697554 0.07484615 prediction 0.634202485490297 Functional Loss - IPO7 ENSG00000205339 CDS Human protein_coding chr11:9430140 chr11:9430143 stopgain 1.000 1 24 hm5C_associated_SNPs_52351 0 0 1 0 1 IPO7 chr11:9430186 5'GT 9430186 Upstream 44bp
chr19 55377854 55377854 1 + G T STAD 55377852 + 55377832 55377872 41 TGTAATGGACCAAGAGCCTGCGGGGGACAGAACAGTGAATA TGTAATGGACCAAGAGCCTGCGTGGGACAGAACAGTGAATA < 41bp 0.817085515625194 0.498108640992534 0.90493226 0.51883644 prediction 0.634171031250389 Functional Loss - KIR3DL2 ENSG00000167633;ENSG00000240403 CDS Human other chr19:55377852 chr19:55377854 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_52353 0 0 0 0 2 KIR3DL2 chr19:55377825 3'AG 55377825 Downstream 30bp
chr19 55377854 55377854 1 + G T STAD 55377852 + 55377832 55377872 41 TGTAATGGACCAAGAGCCTGCGGGGGACAGAACAGTGAATA TGTAATGGACCAAGAGCCTGCGTGGGACAGAACAGTGAATA < 41bp 0.817085515625194 0.498108640992534 0.90493226 0.51883644 prediction 0.634171031250389 Functional Loss - KIR3DL2 ENSG00000167633;ENSG00000240403 CDS Human other chr19:55377852 chr19:55377854 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_52353 0 0 0 0 2 KIR3DL2 chr19:55377877 5'GT 55377877 Upstream 24bp
chr1 63300503 63300503 1 + A C DLBC 63300499 + 63300479 63300519 41 TGCCAATCTTTTGTAGATGTCAGCATAAAGGATTTCCCTCT TGCCAATCTTTTGTAGATGTCAGCCTAAAGGATTTCCCTCT < 41bp 0.817084246149422 0.440358855912489 0.17254457 0.21325663 prediction 0.634168492298845 Functional Loss - ATG4C ENSG00000125703 CDS Human protein_coding chr1:63300499 chr1:63300503 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_52354 0 0 1 0 2 ATG4C chr1:63300447 3'AG 63300447 Downstream 57bp
chr1 63300503 63300503 1 + A C DLBC 63300499 + 63300479 63300519 41 TGCCAATCTTTTGTAGATGTCAGCATAAAGGATTTCCCTCT TGCCAATCTTTTGTAGATGTCAGCCTAAAGGATTTCCCTCT < 41bp 0.817084246149422 0.440358855912489 0.17254457 0.21325663 prediction 0.634168492298845 Functional Loss - ATG4C ENSG00000125703 CDS Human protein_coding chr1:63300499 chr1:63300503 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_52354 0 0 1 0 2 ATG4C chr1:63300523 5'GT 63300523 Upstream 21bp
chr10 45938942 45938942 1 + G T SKCM 45938939 + 45938919 45938959 41 GACCCGGAGCTGCAGGACTTCGTGAACGATGTCTACGTGTA GACCCGGAGCTGCAGGACTTCGTTAACGATGTCTACGTGTA < 41bp 0.817062960989897 0.451722538488124 0.5066712 0.23871756 prediction 0.634125921979794 Functional Loss - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45938939 chr10:45938942 synonymous SNV . 0 24 hm5C_associated_SNPs_52359 0 0 0 0 2 ALOX5 chr10:45938864 3'AG 45938864 Downstream 79bp
chr10 45938942 45938942 1 + G T SKCM 45938939 + 45938919 45938959 41 GACCCGGAGCTGCAGGACTTCGTGAACGATGTCTACGTGTA GACCCGGAGCTGCAGGACTTCGTTAACGATGTCTACGTGTA < 41bp 0.817062960989897 0.451722538488124 0.5066712 0.23871756 prediction 0.634125921979794 Functional Loss - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45938939 chr10:45938942 synonymous SNV . 0 24 hm5C_associated_SNPs_52359 0 0 0 0 2 ALOX5 chr10:45938985 5'GT 45938985 Upstream 44bp
chr12 6437022 6437022 1 + G T LUSC 6437020 + 6437000 6437040 41 ATTGAGGGGGCCGAGGAGCCCCGGGACAGCAGGCCACGGAA ATTGAGGGGGCCGAGGAGCCCCTGGACAGCAGGCCACGGAA < 41bp 0.820005361827889 0.502946488605177 0.8958068 0.50863403 prediction 0.634117746445424 Functional Loss - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6437020 chr12:6437022 nonsynonymous SNV 0.007 0 23 hm5C_associated_SNPs_52360 0 0 0 0 1 PLEKHG6 chr12:6437112 5'GT 6437112 Upstream 91bp
chr22 33245471 33245471 1 + G T LUAD 33245468 + 33245448 33245488 41 CCAAGGTGGTGGGGAAGAAGCTGGTAAAGGAGGGGCCCTTC CCAAGGTGGTGGGGAAGAAGCTGTTAAAGGAGGGGCCCTTC < 41bp 0.877265373603072 0.5602299655001 0.6705385 0.5403806 prediction 0.634070816205942 Functional Loss - TIMP3 ENSG00000100234 CDS Human protein_coding chr22:33245468 chr22:33245471 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_52363 0 0 1 0 2 TIMP3 chr22:33245439 3'AG 33245439 Downstream 33bp
chr22 33245471 33245471 1 + G T LUAD 33245468 + 33245448 33245488 41 CCAAGGTGGTGGGGAAGAAGCTGGTAAAGGAGGGGCCCTTC CCAAGGTGGTGGGGAAGAAGCTGTTAAAGGAGGGGCCCTTC < 41bp 0.877265373603072 0.5602299655001 0.6705385 0.5403806 prediction 0.634070816205942 Functional Loss - TIMP3 ENSG00000100234 CDS Human protein_coding chr22:33245468 chr22:33245471 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_52363 0 0 1 0 2 TIMP3 chr22:33245521 5'GT 33245521 Upstream 51bp
chr6 43624424 43624424 1 + G T SARC 43624421 + 43624401 43624441 41 AGGCTGACCTGGACCCCTCCCTGGATTTCATGGACTCCTTG AGGCTGACCTGGACCCCTCCCTGTATTTCATGGACTCCTTG < 41bp 0.872132108423355 0.555111552684876 0.19875208 0.054282844 prediction 0.634041111476958 Functional Loss - RSPH9 ENSG00000172426 CDS Human protein_coding chr6:43624421 chr6:43624424 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_52365 0 0 0 0 1 RSPH9 chr6:43624460 5'GT 43624460 Upstream 37bp
chr1 203008326 203008326 1 + G T LUAD 203008323 + 203008303 203008343 41 GCCGGCTCCAGGATGCCATACACGAGCGGGACCAGCTCCAG GCCGGCTCCAGGATGCCATACACTAGCGGGACCAGCTCCAG < 41bp 0.817001149564021 0.45336293712588 0.19928685 0.13322598 prediction 0.634002299128042 Functional Loss - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203008323 chr1:203008326 stopgain 0.963 1 24 hm5C_associated_SNPs_52366 0 0 1 0 1 PPFIA4 chr1:203008370 5'GT 203008370 Upstream 45bp
chr2 3750004 3750004 1 + G T UCEC 3750001 + 3749981 3750021 41 ATAGCCTGACCCTAGAGCTCCAAGATGTCATCACTCACGCC ATAGCCTGACCCTAGAGCTCCAATATGTCATCACTCACGCC < 41bp 0.816977351692481 0.444202047283832 0.05320871 0.030891031 prediction 0.633954703384963 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3750001 chr2:3750004 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_52370 0 0 0 0 1 ALLC chr2:3749953 3'AG 3749953 Downstream 52bp
chr3 132056339 132056339 1 + G T UCEC 132056336 + 132056316 132056356 41 TCAGGAACTGCCCTCGTTTTCAAGAACTTGAGAGTGAGACT TCAGGAACTGCCCTCGTTTTCAATAACTTGAGAGTGAGACT < 41bp 0.816974388901713 0.450605053083157 0.39677164 0.06639919 prediction 0.633948777803426 Functional Loss - ACPP ENSG00000014257 CDS Human protein_coding chr3:132056336 chr3:132056339 stopgain 0.974 1 24 hm5C_associated_SNPs_52371 0 0 0 0 2 ACPP chr3:132056300 3'AG 132056300 Downstream 40bp
chr3 132056339 132056339 1 + G T UCEC 132056336 + 132056316 132056356 41 TCAGGAACTGCCCTCGTTTTCAAGAACTTGAGAGTGAGACT TCAGGAACTGCCCTCGTTTTCAATAACTTGAGAGTGAGACT < 41bp 0.816974388901713 0.450605053083157 0.39677164 0.06639919 prediction 0.633948777803426 Functional Loss - ACPP ENSG00000014257 CDS Human protein_coding chr3:132056336 chr3:132056339 stopgain 0.974 1 24 hm5C_associated_SNPs_52371 0 0 0 0 2 ACPP chr3:132056398 5'GT 132056398 Upstream 60bp
chr20 37378814 37378814 1 + G T BLCA 37378811 + 37378791 37378831 41 TACCACAATAAGCCAAAGAACTCGATGTGCAGTGGGCTAAT TACCACAATAAGCCAAAGAACTCTATGTGCAGTGGGCTAAT < 41bp 0.864668062537088 0.547695871749243 0.550255 0.46852592 prediction 0.633944381575692 Functional Loss - ACTR5 ENSG00000101442 CDS Human protein_coding chr20:37378811 chr20:37378814 synonymous SNV . 0 24 hm5C_associated_SNPs_52372 0 0 1 0 1 ACTR5 chr20:37378882 5'GT 37378882 Upstream 69bp
chr12 102590817 102590817 1 - C A UCEC 102590820 - 102590800 102590840 41 TTCAGAATACTGAATCAACACAAGAAAAGAGAGAAATTGGG TTCAGAATACTGAATCAACACAATAAAAGAGAGAAATTGGG < 41bp 0.834345435668743 0.517390337662405 0.28544685 0.33164415 prediction 0.633910196012677 Functional Loss - PMCH ENSG00000183395 CDS Human protein_coding chr12:102590820 chr12:102590817 stopgain 1.000 1 24 hm5C_associated_SNPs_52373 0 0 0 0 1 PMCH chr12:102590751 5'GT 102590751 Upstream 67bp
chrX 38525426 38525426 1 + G T LUAD 38525423 + 38525403 38525443 41 GAGTCTGGGGCAAACTTACTCTGGGCACCTATATCTCCCTT GAGTCTGGGGCAAACTTACTCTGTGCACCTATATCTCCCTT < 41bp 0.875015492983319 0.558083039630972 0.3908826 0.14143056 prediction 0.633864906704693 Functional Loss - TSPAN7 ENSG00000156298;ENSG00000250349 CDS Human other chrX:38525423 chrX:38525426 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52376 0 0 1 0 1 TSPAN7 chrX:38525375 3'AG 38525375 Downstream 52bp
chr1 45226293 45226293 1 + G T UCEC 45226290 + 45226270 45226310 41 ATCAGGGCCCTGGGACAGAACAAGGCTCACACCCCGTTCCG ATCAGGGCCCTGGGACAGAACAATGCTCACACCCCGTTCCG < 41bp 0.882537670681837 0.565616359372744 0.90251696 0.28878534 prediction 0.633842622618186 Functional Loss - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45226290 chr1:45226293 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_52377 0 0 1 0 2 KIF2C chr1:45226264 3'AG 45226264 Downstream 30bp
chr1 45226293 45226293 1 + G T UCEC 45226290 + 45226270 45226310 41 ATCAGGGCCCTGGGACAGAACAAGGCTCACACCCCGTTCCG ATCAGGGCCCTGGGACAGAACAATGCTCACACCCCGTTCCG < 41bp 0.882537670681837 0.565616359372744 0.90251696 0.28878534 prediction 0.633842622618186 Functional Loss - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45226290 chr1:45226293 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_52377 0 0 1 0 2 KIF2C chr1:45226374 5'GT 45226374 Upstream 82bp
chr20 30072005 30072005 1 + G T LUAD 30072002 + 30071982 30072022 41 GTGTTCGACTGTAAATTCATCGAGACATCCGCCACGCTGCA GTGTTCGACTGTAAATTCATCGATACATCCGCCACGCTGCA < 41bp 0.816854131556088 0.450924354857833 0.38616323 0.058763564 prediction 0.633708263112176 Functional Loss - REM1 ENSG00000088320 CDS Human protein_coding chr20:30072002 chr20:30072005 nonsynonymous SNV 0.960 5 24 hm5C_associated_SNPs_52381 0 0 0 0 1 REM1 chr20:30071962 3'AG 30071962 Downstream 44bp
chr11 118220490 118220490 1 + G T COAD 118220487 + 118220467 118220507 41 TGGTTAAGGTGTATGACTATCAAGAAGATGGTTCGGTACTT TGGTTAAGGTGTATGACTATCAATAAGATGGTTCGGTACTT < 41bp 0.861181989258597 0.544358579295504 0.71113217 0.17464358 prediction 0.633646819926185 Functional Loss - CD3G ENSG00000160654 CDS Human protein_coding chr11:118220487 chr11:118220490 stopgain 0.500 0 24 hm5C_associated_SNPs_52387 0 0 0 0 1 CD3G chr11:118220458 3'AG 118220458 Downstream 33bp
chr16 20435294 20435294 1 + G T LUSC 20435292 + 20435272 20435312 41 TGGAACACGACTGACACTGGCTGGGTGAAGGCAGCCTGGAC TGGAACACGACTGACACTGGCTTGGTGAAGGCAGCCTGGAC < 41bp 0.816805105498864 0.487210137365041 0.32187665 0.036842883 prediction 0.633610210997728 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20435292 chr16:20435294 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52390 0 0 1 0 2 ACSM5 chr16:20435238 3'AG 20435238 Downstream 57bp
chr16 20435294 20435294 1 + G T LUSC 20435292 + 20435272 20435312 41 TGGAACACGACTGACACTGGCTGGGTGAAGGCAGCCTGGAC TGGAACACGACTGACACTGGCTTGGTGAAGGCAGCCTGGAC < 41bp 0.816805105498864 0.487210137365041 0.32187665 0.036842883 prediction 0.633610210997728 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20435292 chr16:20435294 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52390 0 0 1 0 2 ACSM5 chr16:20435391 5'GT 20435391 Upstream 98bp
chr10 82363454 82363454 1 + A T LUSC 82363450 + 82363430 82363470 41 GGCACGGTCGCTGGCCTCAGCTCCATGTTCCGGGAGCTTGG GGCACGGTCGCTGGCCTCAGCTCCTTGTTCCGGGAGCTTGG < 41bp 0.81676398776919 0.489209641034555 0.9198115 0.33476198 prediction 0.63352797553838 Functional Loss - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82363450 chr10:82363454 nonsynonymous SNV 0.838 0 25 hm5C_associated_SNPs_52393 0 0 0 0 1 SH2D4B chr10:82363551 5'GT 82363551 Upstream 98bp
chr19 50302620 50302620 1 + G T LUAD 50302618 + 50302598 50302638 41 TGGTTCGGGCCTGCAACCAGCTGGGCCAGTTCCTGCAGCAC TGGTTCGGGCCTGCAACCAGCTTGGCCAGTTCCTGCAGCAC < 41bp 0.828351840116214 0.511600124015927 0.9074614 0.56748706 prediction 0.633503432200575 Functional Loss - AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50302618 chr19:50302620 synonymous SNV . 0 23 hm5C_associated_SNPs_52395 0 0 1 0 1 AP2A1 chr19:50302584 3'AG 50302584 Downstream 37bp
chr2 178977514 178977514 1 + A C LUSC 178977510 + 178977490 178977530 41 TTCGCCCGCAGCTCACAGGCCTGCAGGGCCATGGAGGAGAT TTCGCCCGCAGCTCACAGGCCTGCCGGGCCATGGAGGAGAT < 41bp 0.890001422988517 0.573255725255993 0.11446592 0.054014742 prediction 0.633491395465049 Functional Loss - RBM45 ENSG00000155636 CDS Human protein_coding chr2:178977510 chr2:178977514 synonymous SNV . 0 25 hm5C_associated_SNPs_52396 0 0 1 0 1 RBM45 chr2:178977573 5'GT 178977573 Upstream 60bp
chr14 21464377 21464377 1 + G T UCEC 21464374 + 21464354 21464394 41 TTATGTGTTCACAGTGTCCCCATGAACTCCCTTGTCCCCAG TTATGTGTTCACAGTGTCCCCATTAACTCCCTTGTCCCCAG < 41bp 0.816740913244097 0.449609565523364 0.18347186 0.101523876 prediction 0.633481826488193 Functional Loss - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21464374 chr14:21464377 stopgain 1.000 1 24 hm5C_associated_SNPs_52399 0 0 1 0 1 METTL17 chr14:21464451 5'GT 21464451 Upstream 75bp
chrX 47028850 47028850 1 + G T LUAD 47028847 + 47028827 47028867 41 ATCCTCGCGAGTATGGCAGCCAGGAGGGCAAGCATGACTAT ATCCTCGCGAGTATGGCAGCCAGTAGGGCAAGCATGACTAT < 41bp 0.868066912024761 0.551354172245889 0.77373815 0.30131334 prediction 0.633425479557744 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47028847 chrX:47028850 stopgain 1.000 0 24 hm5C_associated_SNPs_52401 0 0 1 0 1 RBM10 chrX:47028897 5'GT 47028897 Upstream 48bp
chr1 235582807 235582807 1 + G T UCEC 235582804 + 235582784 235582824 41 GCAGTCAGCTGAGCAAGTTGCAAGAAGTTTCTCTGAGGAAC GCAGTCAGCTGAGCAAGTTGCAATAAGTTTCTCTGAGGAAC < 41bp 0.816681249106337 0.4547361583958 0.48419577 0.19690487 prediction 0.633362498212675 Functional Loss - TBCE ENSG00000116957 CDS Human protein_coding chr1:235582804 chr1:235582807 stopgain 0.469 0 24 hm5C_associated_SNPs_52404 0 0 1 0 3 TBCE chr1:235582732 3'AG 235582732 Downstream 76bp
chr1 235582807 235582807 1 + G T UCEC 235582804 + 235582784 235582824 41 GCAGTCAGCTGAGCAAGTTGCAAGAAGTTTCTCTGAGGAAC GCAGTCAGCTGAGCAAGTTGCAATAAGTTTCTCTGAGGAAC < 41bp 0.816681249106337 0.4547361583958 0.48419577 0.19690487 prediction 0.633362498212675 Functional Loss - TBCE ENSG00000116957 CDS Human protein_coding chr1:235582804 chr1:235582807 stopgain 0.469 0 24 hm5C_associated_SNPs_52404 0 0 1 0 3 TBCE chr1:235582788 3'AG 235582788 Downstream 20bp
chr1 235582807 235582807 1 + G T UCEC 235582804 + 235582784 235582824 41 GCAGTCAGCTGAGCAAGTTGCAAGAAGTTTCTCTGAGGAAC GCAGTCAGCTGAGCAAGTTGCAATAAGTTTCTCTGAGGAAC < 41bp 0.816681249106337 0.4547361583958 0.48419577 0.19690487 prediction 0.633362498212675 Functional Loss - TBCE ENSG00000116957 CDS Human protein_coding chr1:235582804 chr1:235582807 stopgain 0.469 0 24 hm5C_associated_SNPs_52404 0 0 1 0 3 TBCE chr1:235582876 5'GT 235582876 Upstream 70bp
chr19 40478462 40478462 1 + G T UCEC 40478460 + 40478440 40478480 41 AGCCATCGTGGGCTCTACCACAGGTGTGCTAAGGACACCTC AGCCATCGTGGGCTCTACCACATGTGTGCTAAGGACACCTC < 41bp 0.817763132706217 0.501132654726179 0.9045093 0.34295046 prediction 0.633260955960076 Functional Loss - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40478460 chr19:40478462 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_52411 0 0 1 0 2 PSMC4 chr19:40478369 3'AG 40478369 Downstream 94bp
chr19 40478462 40478462 1 + G T UCEC 40478460 + 40478440 40478480 41 AGCCATCGTGGGCTCTACCACAGGTGTGCTAAGGACACCTC AGCCATCGTGGGCTCTACCACATGTGTGCTAAGGACACCTC < 41bp 0.817763132706217 0.501132654726179 0.9045093 0.34295046 prediction 0.633260955960076 Functional Loss - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40478460 chr19:40478462 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_52411 0 0 1 0 2 PSMC4 chr19:40478462 5'GT 40478462 Upstream 1bp
chr8 22460156 22460156 1 + G T UCEC 22460154 + 22460134 22460174 41 CCTCCTGATGGCTCTGACCCCAGGTGAGCCCCGTGCCCAGC CCTCCTGATGGCTCTGACCCCATGTGAGCCCCGTGCCCAGC < 41bp 0.816613636569862 0.498823954989531 0.9149686 0.4216846 prediction 0.633227273139723 Functional Loss - C8orf58 ENSG00000241852 CDS Human protein_coding chr8:22460154 chr8:22460156 nonsynonymous SNV 0.371 3 23 hm5C_associated_SNPs_52414 0 0 0 0 2 C8orf58 chr8:22460074 3'AG 22460074 Downstream 83bp
chr8 22460156 22460156 1 + G T UCEC 22460154 + 22460134 22460174 41 CCTCCTGATGGCTCTGACCCCAGGTGAGCCCCGTGCCCAGC CCTCCTGATGGCTCTGACCCCATGTGAGCCCCGTGCCCAGC < 41bp 0.816613636569862 0.498823954989531 0.9149686 0.4216846 prediction 0.633227273139723 Functional Loss - C8orf58 ENSG00000241852 CDS Human protein_coding chr8:22460154 chr8:22460156 nonsynonymous SNV 0.371 3 23 hm5C_associated_SNPs_52414 0 0 0 0 2 C8orf58 chr8:22460156 5'GT 22460156 Upstream 1bp
chr7 45931635 45931635 1 + G T UCEC 45931632 + 45931612 45931652 41 TTTTACCTGCCAAACTGCAACAAGAATGGATTTTATCACAG TTTTACCTGCCAAACTGCAACAATAATGGATTTTATCACAG < 41bp 0.816593174210852 0.464848745134793 0.18753129 0.11761251 prediction 0.633186348421704 Functional Loss - IGFBP1 ENSG00000146678 CDS Human protein_coding chr7:45931632 chr7:45931635 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_52416 0 0 0 0 1 IGFBP1 chr7:45931659 5'GT 45931659 Upstream 25bp
chr15 72691216 72691216 1 + G T LUSC 72691213 + 72691193 72691233 41 GACTCTGGACCTTATGCAACCATGAGCTGTGCTGGAGCCAC GACTCTGGACCTTATGCAACCATTAGCTGTGCTGGAGCCAC < 41bp 0.816567126187047 0.453475814886483 0.2808334 0.053557843 prediction 0.633134252374095 Functional Loss - TMEM202 ENSG00000187806 CDS Human protein_coding chr15:72691213 chr15:72691216 stopgain 0.994 0 24 hm5C_associated_SNPs_52422 0 0 0 0 1 TMEM202 chr15:72691249 5'GT 72691249 Upstream 34bp
chr3 158261250 158261250 1 + G T UCEC 158261247 + 158261227 158261267 41 TCCCTACTGCTATCAAGTACCAAGATGACAATTCCCTGGCC TCCCTACTGCTATCAAGTACCAATATGACAATTCCCTGGCC < 41bp 0.820071747725499 0.503509880462435 0.11445719 0.03487426 prediction 0.633123734526128 Functional Loss - RSRC1 ENSG00000174891 CDS Human protein_coding chr3:158261247 chr3:158261250 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_52423 0 0 1 0 1 RSRC1 chr3:158261276 5'GT 158261276 Upstream 27bp
chrX 107169452 107169452 1 + G T UCEC 107169450 + 107169430 107169470 41 CCCAGAGAGGTTTAGTGGCACAGGGTGCTATGGGGCAGCAG CCCAGAGAGGTTTAGTGGCACATGGTGCTATGGGGCAGCAG < 41bp 0.816560130509611 0.493100613468392 0.5420379 0.11605498 prediction 0.633120261019221 Functional Loss - MID2 ENSG00000080561 CDS Human protein_coding chrX:107169450 chrX:107169452 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52424 0 0 0 0 1 MID2 chrX:107169531 5'GT 107169531 Upstream 80bp
chr11 1861865 1861865 1 + G T THYM 1861862 + 1861842 1861882 41 CACTGCCCGCCGCTGCATATCCCGGGCTCCATGTCTGAAGT CACTGCCCGCCGCTGCATATCCCTGGCTCCATGTCTGAAGT < 41bp 0.816542513564322 0.443627476558886 0.6997969 0.071689576 prediction 0.633085027128643 Functional Loss - TNNI2 ENSG00000130598 CDS Human protein_coding chr11:1861862 chr11:1861865 synonymous SNV . 0 24 hm5C_associated_SNPs_52426 0 0 0 0 1 TNNI2 chr11:1861886 5'GT 1861886 Upstream 22bp
chr2 242129487 242129487 1 + G T rs11695874 242129485 + 242129465 242129505 41 GGTGCAGGAGCAGGATGCTGCGGCGACGGGCCCAGGAAGAG GGTGCAGGAGCAGGATGCTGCGTCGACGGGCCCAGGAAGAG < 41bp 0.829963871649751 0.513440757966476 0.87828577 0.30065858 prediction 0.633046227366548 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242129485 chr2:242129487 synonymous SNV . 0 23 hm5C_associated_SNPs_52429 0 0 0 0 2 ANO7 chr2:242129472 3'AG 242129472 Downstream 16bp
chr2 242129487 242129487 1 + G T rs11695874 242129485 + 242129465 242129505 41 GGTGCAGGAGCAGGATGCTGCGGCGACGGGCCCAGGAAGAG GGTGCAGGAGCAGGATGCTGCGTCGACGGGCCCAGGAAGAG < 41bp 0.829963871649751 0.513440757966476 0.87828577 0.30065858 prediction 0.633046227366548 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242129485 chr2:242129487 synonymous SNV . 0 23 hm5C_associated_SNPs_52429 0 0 0 0 2 ANO7 chr2:242129586 5'GT 242129586 Upstream 100bp
chr19 12783926 12783926 1 + G T BRCA 12783923 + 12783903 12783943 41 ACAAAGACACAGGGGAGCTGCTGGGCGAGTGAGTCCTTGTG ACAAAGACACAGGGGAGCTGCTGTGCGAGTGAGTCCTTGTG < 41bp 0.81648137332221 0.443252522910894 0.72355676 0.13263404 prediction 0.63296274664442 Functional Loss - WDR83 ENSG00000123154 CDS Human protein_coding chr19:12783923 chr19:12783926 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_52433 0 0 0 1 1 WDR83 chr19:12783930 5'GT 12783930 Upstream 5bp
chr1 19029790 19029790 1 + G T UCEC 19029788 + 19029768 19029808 41 TCAGCAACGGCCTGTCTCCTCAGGTAGGTGGTCTCAGCCCA TCAGCAACGGCCTGTCTCCTCATGTAGGTGGTCTCAGCCCA < 41bp 0.816475262772276 0.488009961993068 0.27134186 0.074478835 prediction 0.632950525544552 Functional Loss - PAX7 ENSG00000009709 CDS Human protein_coding chr1:19029788 chr1:19029790 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52434 0 0 0 0 1 PAX7 chr1:19029790 5'GT 19029790 Upstream 1bp
chr3 36485037 36485037 1 + G T LUAD 36485035 + 36485015 36485055 41 AGCCTGACGTCCACACCCGCCAGGGCTGGTCTGCATCCAGG AGCCTGACGTCCACACCCGCCATGGCTGGTCTGCATCCAGG < 41bp 0.816475178141854 0.483074350078283 0.91605175 0.3370418 prediction 0.632950356283708 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36485035 chr3:36485037 nonsynonymous SNV 0.037 2 23 hm5C_associated_SNPs_52435 0 0 0 0 1 STAC chr3:36485132 5'GT 36485132 Upstream 96bp
chr3 36485038 36485038 1 + G T LUSC 36485035 + 36485015 36485055 41 AGCCTGACGTCCACACCCGCCAGGGCTGGTCTGCATCCAGG AGCCTGACGTCCACACCCGCCAGTGCTGGTCTGCATCCAGG < 41bp 0.816475178141854 0.43922467951873 0.91605175 0.5308052 prediction 0.632950356283708 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36485035 chr3:36485038 nonsynonymous SNV 0.031 1 24 hm5C_associated_SNPs_52436 0 0 0 0 1 STAC chr3:36485132 5'GT 36485132 Upstream 95bp
chr3 53217201 53217201 1 + G T LUAD 53217198 + 53217178 53217218 41 ATCGGCAGATGCACTGGCACCGCGGCCAACAGCCGGGACAC ATCGGCAGATGCACTGGCACCGCTGCCAACAGCCGGGACAC < 41bp 0.88168715498064 0.565219941202517 0.4561993 0.062434047 prediction 0.632934427556246 Functional Loss - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53217198 chr3:53217201 synonymous SNV . 0 24 hm5C_associated_SNPs_52437 0 0 1 0 2 PRKCD chr3:53217137 3'AG 53217137 Downstream 65bp
chr3 53217201 53217201 1 + G T LUAD 53217198 + 53217178 53217218 41 ATCGGCAGATGCACTGGCACCGCGGCCAACAGCCGGGACAC ATCGGCAGATGCACTGGCACCGCTGCCAACAGCCGGGACAC < 41bp 0.88168715498064 0.565219941202517 0.4561993 0.062434047 prediction 0.632934427556246 Functional Loss - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53217198 chr3:53217201 synonymous SNV . 0 24 hm5C_associated_SNPs_52437 0 0 1 0 2 PRKCD chr3:53217222 5'GT 53217222 Upstream 22bp
chrX 10102556 10102556 1 + G T COAD 10102553 + 10102533 10102573 41 AGCGGCCCAGCCGCCGGGCCCGAGGGTCGCCTTTTGTTCGG AGCGGCCCAGCCGCCGGGCCCGATGGTCGCCTTTTGTTCGG < 41bp 0.886510194893898 0.570093433861781 0.92477 0.07239872 prediction 0.632833522064234 Functional Loss - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10102553 chrX:10102556 nonsynonymous SNV 0.919 4 24 hm5C_associated_SNPs_52443 0 0 0 0 1 WWC3 chrX:10102472 3'AG 10102472 Downstream 85bp
chrX 69669672 69669672 1 + G T UCEC 69669669 + 69669649 69669689 41 CGGAGGCGACAGCCTCCACCCGAGACCATCATGGAGGTCAA CGGAGGCGACAGCCTCCACCCGATACCATCATGGAGGTCAA < 41bp 0.870684088737051 0.554284069671193 0.445593 0.06822112 prediction 0.632800038131716 Functional Loss - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69669669 chrX:69669672 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_52446 0 0 0 0 1 DLG3 chrX:69669709 5'GT 69669709 Upstream 38bp
chr10 5495517 5495517 1 + G T THYM 5495514 + 5495494 5495534 41 GAGCAGATTGGTCACATTCTCGTGAGCTGGGTATGTAGTGA GAGCAGATTGGTCACATTCTCGTTAGCTGGGTATGTAGTGA < 41bp 0.81639068626636 0.457619866662659 0.8462665 0.095936924 prediction 0.63278137253272 Functional Loss - NET1 ENSG00000173848 CDS Human protein_coding chr10:5495514 chr10:5495517 synonymous SNV . 0 24 hm5C_associated_SNPs_52447 0 0 1 0 2 NET1 chr10:5495447 3'AG 5495447 Downstream 71bp
chr10 5495517 5495517 1 + G T THYM 5495514 + 5495494 5495534 41 GAGCAGATTGGTCACATTCTCGTGAGCTGGGTATGTAGTGA GAGCAGATTGGTCACATTCTCGTTAGCTGGGTATGTAGTGA < 41bp 0.81639068626636 0.457619866662659 0.8462665 0.095936924 prediction 0.63278137253272 Functional Loss - NET1 ENSG00000173848 CDS Human protein_coding chr10:5495514 chr10:5495517 synonymous SNV . 0 24 hm5C_associated_SNPs_52447 0 0 1 0 2 NET1 chr10:5495523 5'GT 5495523 Upstream 7bp
chr7 6631442 6631442 1 + A T LUAD 6631438 + 6631418 6631458 41 AGCTTGTTGGGAAAACTGGTCTCCATGGCGGTGGCTGTGTG AGCTTGTTGGGAAAACTGGTCTCCTTGGCGGTGGCTGTGTG < 41bp 0.827919825043707 0.511547950440478 0.947509 0.37723547 prediction 0.632743749206459 Functional Loss - C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631438 chr7:6631442 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_52448 0 0 1 0 1 C7orf26 chr7:6631498 5'GT 6631498 Upstream 57bp
chr2 100013284 100013284 1 + G T THCA 100013281 + 100013261 100013301 41 CTCAGTACATTTTTAATTCTCGAGATCCGATAGTGATGGGG CTCAGTACATTTTTAATTCTCGATATCCGATAGTGATGGGG < 41bp 0.854461314816311 0.538096740207343 0.8666283 0.35341692 prediction 0.632729149217938 Functional Loss - EIF5B ENSG00000158417 CDS Human protein_coding chr2:100013281 chr2:100013284 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52449 0 0 1 0 2 EIF5B chr2:100013223 3'AG 100013223 Downstream 62bp
chr2 100013284 100013284 1 + G T THCA 100013281 + 100013261 100013301 41 CTCAGTACATTTTTAATTCTCGAGATCCGATAGTGATGGGG CTCAGTACATTTTTAATTCTCGATATCCGATAGTGATGGGG < 41bp 0.854461314816311 0.538096740207343 0.8666283 0.35341692 prediction 0.632729149217938 Functional Loss - EIF5B ENSG00000158417 CDS Human protein_coding chr2:100013281 chr2:100013284 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52449 0 0 1 0 2 EIF5B chr2:100013361 5'GT 100013361 Upstream 78bp
chr7 141424951 141424951 1 + G T COAD 141424949 + 141424929 141424969 41 ATATCCGCAAGGGTAACTTTCCGGACGTTCCTCAGGAGCTC ATATCCGCAAGGGTAACTTTCCTGACGTTCCTCAGGAGCTC < 41bp 0.822479725142875 0.50611937390442 0.7983004 0.3262226 prediction 0.632720702476909 Functional Loss - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141424949 chr7:141424951 synonymous SNV . 0 23 hm5C_associated_SNPs_52450 0 0 0 0 1 WEE2 chr7:141424996 5'GT 141424996 Upstream 46bp
chr20 21327089 21327089 1 + G T UCEC 21327086 + 21327066 21327106 41 GGCTGGAAGCAGCGGTACTACAAGAACAAATTTGATGTGGA GGCTGGAAGCAGCGGTACTACAATAACAAATTTGATGTGGA < 41bp 0.81635974947991 0.457708821135095 0.5210295 0.19930515 prediction 0.63271949895982 Functional Loss - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21327086 chr20:21327089 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_52452 0 0 1 0 2 XRN2 chr20:21327053 3'AG 21327053 Downstream 37bp
chr20 21327089 21327089 1 + G T UCEC 21327086 + 21327066 21327106 41 GGCTGGAAGCAGCGGTACTACAAGAACAAATTTGATGTGGA GGCTGGAAGCAGCGGTACTACAATAACAAATTTGATGTGGA < 41bp 0.81635974947991 0.457708821135095 0.5210295 0.19930515 prediction 0.63271949895982 Functional Loss - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21327086 chr20:21327089 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_52452 0 0 1 0 2 XRN2 chr20:21327188 5'GT 21327188 Upstream 100bp
chr20 61460839 61460839 1 + G T STAD 61460836 + 61460816 61460856 41 GGACGAGCGGGGTCCAAAGGCGAGAAGGGAGAACGGGTATG GGACGAGCGGGGTCCAAAGGCGATAAGGGAGAACGGGTATG < 41bp 0.872612055877084 0.556273975218729 0.73283195 0.49554488 prediction 0.632676161316709 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61460836 chr20:61460839 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52454 0 0 1 0 2 COL9A3 chr20:61460807 3'AG 61460807 Downstream 33bp
chr20 61460839 61460839 1 + G T STAD 61460836 + 61460816 61460856 41 GGACGAGCGGGGTCCAAAGGCGAGAAGGGAGAACGGGTATG GGACGAGCGGGGTCCAAAGGCGATAAGGGAGAACGGGTATG < 41bp 0.872612055877084 0.556273975218729 0.73283195 0.49554488 prediction 0.632676161316709 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61460836 chr20:61460839 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52454 0 0 1 0 2 COL9A3 chr20:61460851 5'GT 61460851 Upstream 13bp
chr9 133957545 133957545 1 + G T HNSC 133957542 + 133957522 133957562 41 CCAGGACTCTGCTGGCTGATCTGGAAGGTACGTGAGTCCAG CCAGGACTCTGCTGGCTGATCTGTAAGGTACGTGAGTCCAG < 41bp 0.869537040198481 0.553200669205331 0.36907712 0.25845894 prediction 0.6326727419863 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133957542 chr9:133957545 stopgain 0.971 0 24 hm5C_associated_SNPs_52455 0 0 0 0 2 LAMC3 chr9:133957446 3'AG 133957446 Downstream 100bp
chr9 133957545 133957545 1 + G T HNSC 133957542 + 133957522 133957562 41 CCAGGACTCTGCTGGCTGATCTGGAAGGTACGTGAGTCCAG CCAGGACTCTGCTGGCTGATCTGTAAGGTACGTGAGTCCAG < 41bp 0.869537040198481 0.553200669205331 0.36907712 0.25845894 prediction 0.6326727419863 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133957542 chr9:133957545 stopgain 0.971 0 24 hm5C_associated_SNPs_52455 0 0 0 0 2 LAMC3 chr9:133957548 5'GT 133957548 Upstream 4bp
chr16 89652141 89652141 1 + G T SARC 89652139 + 89652119 89652159 41 CGAGGAAAGCACGACTTCATCGGAGAATTCTCTACCACCTT CGAGGAAAGCACGACTTCATCGTAGAATTCTCTACCACCTT < 41bp 0.816333548186517 0.493204258848937 0.91267234 0.509711 prediction 0.632667096373035 Functional Loss - CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89652139 chr16:89652141 nonsynonymous SNV 0.340 4 23 hm5C_associated_SNPs_52456 0 0 1 0 2 CPNE7 chr16:89652095 3'AG 89652095 Downstream 47bp
chr16 89652141 89652141 1 + G T SARC 89652139 + 89652119 89652159 41 CGAGGAAAGCACGACTTCATCGGAGAATTCTCTACCACCTT CGAGGAAAGCACGACTTCATCGTAGAATTCTCTACCACCTT < 41bp 0.816333548186517 0.493204258848937 0.91267234 0.509711 prediction 0.632667096373035 Functional Loss - CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89652139 chr16:89652141 nonsynonymous SNV 0.340 4 23 hm5C_associated_SNPs_52456 0 0 1 0 2 CPNE7 chr16:89652193 5'GT 89652193 Upstream 53bp
chr19 41518390 41518390 1 + G T UCEC 41518387 + 41518367 41518407 41 TTCCGAGGGTACATCATCCCCAAGGTAAGACCGGCTGGAAC TTCCGAGGGTACATCATCCCCAATGTAAGACCGGCTGGAAC < 41bp 0.816321169211515 0.440856567979346 0.8293166 0.07676321 prediction 0.63264233842303 Functional Loss - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41518387 chr19:41518390 nonsynonymous SNV 0.755 3 24 hm5C_associated_SNPs_52458 0 0 0 0 1 CYP2B6 chr19:41518390 5'GT 41518390 Upstream 1bp
chr10 3175452 3175452 1 + A C UCEC 3175448 + 3175428 3175468 41 CTTCATTTACCAGCTGTATTCAGAAGAGGGCAAAGGCGTGT CTTCATTTACCAGCTGTATTCAGACGAGGGCAAAGGCGTGT < 41bp 0.816310201657248 0.429879196087855 0.8628688 0.8856108 prediction 0.632620403314496 Functional Loss - PFKP ENSG00000067057 CDS Human protein_coding chr10:3175448 chr10:3175452 nonsynonymous SNV 0.540 3 25 hm5C_associated_SNPs_52460 0 0 1 0 2 PFKP chr10:3175395 3'AG 3175395 Downstream 58bp
chr10 3175452 3175452 1 + A C UCEC 3175448 + 3175428 3175468 41 CTTCATTTACCAGCTGTATTCAGAAGAGGGCAAAGGCGTGT CTTCATTTACCAGCTGTATTCAGACGAGGGCAAAGGCGTGT < 41bp 0.816310201657248 0.429879196087855 0.8628688 0.8856108 prediction 0.632620403314496 Functional Loss - PFKP ENSG00000067057 CDS Human protein_coding chr10:3175448 chr10:3175452 nonsynonymous SNV 0.540 3 25 hm5C_associated_SNPs_52460 0 0 1 0 2 PFKP chr10:3175506 5'GT 3175506 Upstream 55bp
chr12 122380855 122380855 1 + G T LUAD 122380852 + 122380832 122380872 41 TGGAAACGCCAGCATGCACTCTCGAACTCCCCACAGAGTAC TGGAAACGCCAGCATGCACTCTCTAACTCCCCACAGAGTAC < 41bp 0.872027474730225 0.555742087802988 0.4008279 0.81748927 prediction 0.632570773854475 Functional Loss - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122380852 chr12:122380855 stopgain 0.002 0 24 hm5C_associated_SNPs_52463 0 0 1 0 2 WDR66 chr12:122380801 3'AG 122380801 Downstream 55bp
chr12 122380855 122380855 1 + G T LUAD 122380852 + 122380832 122380872 41 TGGAAACGCCAGCATGCACTCTCGAACTCCCCACAGAGTAC TGGAAACGCCAGCATGCACTCTCTAACTCCCCACAGAGTAC < 41bp 0.872027474730225 0.555742087802988 0.4008279 0.81748927 prediction 0.632570773854475 Functional Loss - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122380852 chr12:122380855 stopgain 0.002 0 24 hm5C_associated_SNPs_52463 0 0 1 0 2 WDR66 chr12:122380881 5'GT 122380881 Upstream 27bp
chr2 23918876 23918876 1 + G T SARC 23918874 + 23918854 23918894 41 GTCAGATGGTGGGGATGACCCAGCGCTCGCTGGTGGCCGTC GTCAGATGGTGGGGATGACCCATCGCTCGCTGGTGGCCGTC < 41bp 0.816281857447601 0.498779458762876 0.88647854 0.4273996 prediction 0.632563714895201 Functional Loss - KLHL29 ENSG00000119771 CDS Human protein_coding chr2:23918874 chr2:23918876 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_52464 0 0 0 0 1 KLHL29 chr2:23918821 3'AG 23918821 Downstream 56bp
chr9 130420727 130420727 1 + G T COAD 130420724 + 130420704 130420744 41 GTGTATCTCATCACTCCATCCGAGAAGGTAAACCTTCCACC GTGTATCTCATCACTCCATCCGATAAGGTAAACCTTCCACC < 41bp 0.816280468623976 0.450095098592451 0.87555003 0.23603234 prediction 0.632560937247952 Functional Loss - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130420724 chr9:130420727 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_52465 0 0 1 0 2 STXBP1 chr9:130420654 3'AG 130420654 Downstream 74bp
chr9 130420727 130420727 1 + G T COAD 130420724 + 130420704 130420744 41 GTGTATCTCATCACTCCATCCGAGAAGGTAAACCTTCCACC GTGTATCTCATCACTCCATCCGATAAGGTAAACCTTCCACC < 41bp 0.816280468623976 0.450095098592451 0.87555003 0.23603234 prediction 0.632560937247952 Functional Loss - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130420724 chr9:130420727 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_52465 0 0 1 0 2 STXBP1 chr9:130420730 5'GT 130420730 Upstream 4bp
chr13 96212655 96212655 1 + A C rs79906565 96212651 + 96212631 96212671 41 GTTAGGGCTGTGCTCAATGACTGGATGTTCCCTATATGCAA GTTAGGGCTGTGCTCAATGACTGGCTGTTCCCTATATGCAA < 41bp 0.889766659154164 0.573526310773623 0.028070897 0.023866206 prediction 0.63248069676108 Functional Loss - CLDN10 ENSG00000134873 CDS Human protein_coding chr13:96212651 chr13:96212655 synonymous SNV . 0 25 hm5C_associated_SNPs_52466 0 0 0 0 2 CLDN10 chr13:96212636 3'AG 96212636 Downstream 20bp
chr13 96212655 96212655 1 + A C rs79906565 96212651 + 96212631 96212671 41 GTTAGGGCTGTGCTCAATGACTGGATGTTCCCTATATGCAA GTTAGGGCTGTGCTCAATGACTGGCTGTTCCCTATATGCAA < 41bp 0.889766659154164 0.573526310773623 0.028070897 0.023866206 prediction 0.63248069676108 Functional Loss - CLDN10 ENSG00000134873 CDS Human protein_coding chr13:96212651 chr13:96212655 synonymous SNV . 0 25 hm5C_associated_SNPs_52466 0 0 0 0 2 CLDN10 chr13:96212717 5'GT 96212717 Upstream 63bp
chr1 17603297 17603297 1 + G T LUAD 17603294 + 17603274 17603314 41 CCGGATGCTCCTGGCCAGCCCTGGGGCCTGCTTCAAGCTCT CCGGATGCTCCTGGCCAGCCCTGTGGCCTGCTTCAAGCTCT < 41bp 0.883636914615451 0.567440148016399 0.8540487 0.24944752 prediction 0.632393533198104 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17603294 chr1:17603297 nonsynonymous SNV 0.015 0 24 hm5C_associated_SNPs_52468 0 0 0 0 2 PADI3 chr1:17603269 3'AG 17603269 Downstream 29bp
chr1 17603297 17603297 1 + G T LUAD 17603294 + 17603274 17603314 41 CCGGATGCTCCTGGCCAGCCCTGGGGCCTGCTTCAAGCTCT CCGGATGCTCCTGGCCAGCCCTGTGGCCTGCTTCAAGCTCT < 41bp 0.883636914615451 0.567440148016399 0.8540487 0.24944752 prediction 0.632393533198104 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17603294 chr1:17603297 nonsynonymous SNV 0.015 0 24 hm5C_associated_SNPs_52468 0 0 0 0 2 PADI3 chr1:17603371 5'GT 17603371 Upstream 75bp
chr11 28318381 28318381 1 + G T rs375725564 28318378 + 28318358 28318398 41 GCATCTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAA GCATCTATCCTAAGAACATACGGTGAGGAGAAGCATGCCAA < 41bp 0.816196067439996 0.468680680695651 0.7170624 0.104873896 prediction 0.632392134879993 Functional Loss - METTL15 ENSG00000169519 CDS Human protein_coding chr11:28318378 chr11:28318381 stopgain 0.969 1 24 hm5C_associated_SNPs_52469 0 0 0 0 3 METTL15 chr11:28318300 3'AG 28318300 Downstream 82bp
chr11 28318381 28318381 1 + G T rs375725564 28318378 + 28318358 28318398 41 GCATCTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAA GCATCTATCCTAAGAACATACGGTGAGGAGAAGCATGCCAA < 41bp 0.816196067439996 0.468680680695651 0.7170624 0.104873896 prediction 0.632392134879993 Functional Loss - METTL15 ENSG00000169519 CDS Human protein_coding chr11:28318378 chr11:28318381 stopgain 0.969 1 24 hm5C_associated_SNPs_52469 0 0 0 0 3 METTL15 chr11:28318344 3'AG 28318344 Downstream 38bp
chr11 28318381 28318381 1 + G T rs375725564 28318378 + 28318358 28318398 41 GCATCTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAA GCATCTATCCTAAGAACATACGGTGAGGAGAAGCATGCCAA < 41bp 0.816196067439996 0.468680680695651 0.7170624 0.104873896 prediction 0.632392134879993 Functional Loss - METTL15 ENSG00000169519 CDS Human protein_coding chr11:28318378 chr11:28318381 stopgain 0.969 1 24 hm5C_associated_SNPs_52469 0 0 0 0 3 METTL15 chr11:28318478 5'GT 28318478 Upstream 98bp
chr1 32087094 32087094 1 + G T UCEC 32087091 + 32087071 32087111 41 CCTGCAGATGACCTCTATCCCAAGATCTACCACAGTTGCTT CCTGCAGATGACCTCTATCCCAATATCTACCACAGTTGCTT < 41bp 0.816162611897209 0.44776992645046 0.7058035 0.24794671 prediction 0.632325223794417 Functional Loss - HCRTR1 ENSG00000121764 CDS Human protein_coding chr1:32087091 chr1:32087094 nonsynonymous SNV 0.973 2 24 hm5C_associated_SNPs_52471 0 0 0 0 2 HCRTR1 chr1:32087078 3'AG 32087078 Downstream 17bp
chr1 32087094 32087094 1 + G T UCEC 32087091 + 32087071 32087111 41 CCTGCAGATGACCTCTATCCCAAGATCTACCACAGTTGCTT CCTGCAGATGACCTCTATCCCAATATCTACCACAGTTGCTT < 41bp 0.816162611897209 0.44776992645046 0.7058035 0.24794671 prediction 0.632325223794417 Functional Loss - HCRTR1 ENSG00000121764 CDS Human protein_coding chr1:32087091 chr1:32087094 nonsynonymous SNV 0.973 2 24 hm5C_associated_SNPs_52471 0 0 0 0 2 HCRTR1 chr1:32087193 5'GT 32087193 Upstream 100bp
chr12 119591400 119591400 1 + G T UCEC 119591398 + 119591378 119591418 41 TCTGGCAAGAGGAGCCCGCCCAGCAGAAGCTCTAGGTCCCG TCTGGCAAGAGGAGCCCGCCCATCAGAAGCTCTAGGTCCCG < 41bp 0.829063034683498 0.512937871792726 0.53119385 0.20452103 prediction 0.632250325781544 Functional Loss - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119591398 chr12:119591400 nonsynonymous SNV 0.949 3 23 hm5C_associated_SNPs_52473 0 0 1 0 2 SRRM4 chr12:119591344 3'AG 119591344 Downstream 57bp
chr12 119591400 119591400 1 + G T UCEC 119591398 + 119591378 119591418 41 TCTGGCAAGAGGAGCCCGCCCAGCAGAAGCTCTAGGTCCCG TCTGGCAAGAGGAGCCCGCCCATCAGAAGCTCTAGGTCCCG < 41bp 0.829063034683498 0.512937871792726 0.53119385 0.20452103 prediction 0.632250325781544 Functional Loss - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119591398 chr12:119591400 nonsynonymous SNV 0.949 3 23 hm5C_associated_SNPs_52473 0 0 1 0 2 SRRM4 chr12:119591454 5'GT 119591454 Upstream 55bp
chr1 158261014 158261014 1 + A C ESCA 158261010 + 158260990 158261030 41 GAGGTCAGGGCTCAGGATGGCTGGACGAGTTGCAGACTCAT GAGGTCAGGGCTCAGGATGGCTGGCCGAGTTGCAGACTCAT < 41bp 0.882375859101949 0.566258174912678 0.4962625 0.3959235 prediction 0.632235368378541 Functional Loss - CD1C ENSG00000158481 CDS Human protein_coding chr1:158261010 chr1:158261014 nonsynonymous SNV 0.068 1 25 hm5C_associated_SNPs_52474 0 0 0 0 1 CD1C chr1:158260924 3'AG 158260924 Downstream 91bp
chr18 3277806 3277806 1 + G T LUAD 3277803 + 3277783 3277823 41 CTAAGAGAGCTGCTGACAACCATGGGGGATCGGTTTACAGA CTAAGAGAGCTGCTGACAACCATTGGGGATCGGTTTACAGA < 41bp 0.816108732067703 0.45801606929723 0.63161206 0.038669795 prediction 0.632217464135405 Functional Loss - MYL12B ENSG00000118680 CDS Human protein_coding chr18:3277803 chr18:3277806 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_52476 0 0 1 0 1 MYL12B chr18:3277763 3'AG 3277763 Downstream 44bp
chr12 119773029 119773029 1 + G T LUSC 119773026 + 119773006 119773046 41 AAGCTTCAGAGTTCCCCCAACTCGGGGGCTGTCCGGCCCTT AAGCTTCAGAGTTCCCCCAACTCTGGGGCTGTCCGGCCCTT < 41bp 0.816108506955822 0.458691223553122 0.3954805 0.14054585 prediction 0.632217013911645 Functional Loss - CCDC60 ENSG00000183273 CDS Human protein_coding chr12:119773026 chr12:119773029 synonymous SNV . 0 24 hm5C_associated_SNPs_52477 0 0 0 0 1 CCDC60 chr12:119773071 5'GT 119773071 Upstream 43bp
chr17 4351498 4351498 1 + G T TGCT 4351495 + 4351475 4351515 41 CCTTGATCCTGCTTATCCTGCTGGTTCCAGACCCACCCCGG CCTTGATCCTGCTTATCCTGCTGTTTCCAGACCCACCCCGG < 41bp 0.81609695508369 0.437362250719139 0.55631673 0.15354875 prediction 0.632193910167379 Functional Loss - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4351495 chr17:4351498 nonsynonymous SNV 0.965 4 24 hm5C_associated_SNPs_52478 0 0 0 0 1 SPNS3 chr17:4351450 3'AG 4351450 Downstream 49bp
chr19 32968497 32968497 1 + G T SARC 32968494 + 32968474 32968514 41 CTGGCCGGAGTCAAGCTGTGCACGGGAAGGACCCTAACCAA CTGGCCGGAGTCAAGCTGTGCACTGGAAGGACCCTAACCAA < 41bp 0.81609558920365 0.461147284704504 0.6047404 0.2914909 prediction 0.6321911784073 Functional Loss - DPY19L3 ENSG00000178904 CDS Human protein_coding chr19:32968494 chr19:32968497 synonymous SNV . 0 24 hm5C_associated_SNPs_52479 0 0 1 0 2 DPY19L3 chr19:32968428 3'AG 32968428 Downstream 70bp
chr19 32968497 32968497 1 + G T SARC 32968494 + 32968474 32968514 41 CTGGCCGGAGTCAAGCTGTGCACGGGAAGGACCCTAACCAA CTGGCCGGAGTCAAGCTGTGCACTGGAAGGACCCTAACCAA < 41bp 0.81609558920365 0.461147284704504 0.6047404 0.2914909 prediction 0.6321911784073 Functional Loss - DPY19L3 ENSG00000178904 CDS Human protein_coding chr19:32968494 chr19:32968497 synonymous SNV . 0 24 hm5C_associated_SNPs_52479 0 0 1 0 2 DPY19L3 chr19:32968560 5'GT 32968560 Upstream 64bp
chr19 54403522 54403522 1 + G T LUAD 54403519 + 54403499 54403539 41 TTCGTGATGGAGTACGTCACCGGGGGAGACTTGATGTACCA TTCGTGATGGAGTACGTCACCGGTGGAGACTTGATGTACCA < 41bp 0.882057068680793 0.565984664444842 0.9088104 0.0898864 prediction 0.632144808471903 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403519 chr19:54403522 synonymous SNV . 0 24 hm5C_associated_SNPs_52482 0 0 0 0 1 PRKCG chr19:54403487 3'AG 54403487 Downstream 36bp
chr5 43277227 43277227 1 + G T READ 43277224 + 43277204 43277244 41 AAACCCAGAGGCTACTATCCCGAGAAATCTCCAGCATGGAA AAACCCAGAGGCTACTATCCCGATAAATCTCCAGCATGGAA < 41bp 0.816072037633678 0.450714973326212 0.533177 0.07194781 prediction 0.632144075267356 Functional Loss - NIM1K ENSG00000177453 CDS Human protein_coding chr5:43277224 chr5:43277227 stopgain 0.922 1 24 hm5C_associated_SNPs_52483 0 0 0 0 1 NIM1K chr5:43277159 3'AG 43277159 Downstream 69bp
chrX 105169003 105169003 1 + G T LUSC 105169000 + 105168980 105169020 41 GATTGAAGAGACCTGCGTCTCAGGACTTTGAATATCTACAG GATTGAAGAGACCTGCGTCTCAGTACTTTGAATATCTACAG < 41bp 0.847400098997375 0.531359833594491 0.85958946 0.24805093 prediction 0.632080530805768 Functional Loss - NRK ENSG00000123572 CDS Human protein_coding chrX:105169000 chrX:105169003 nonsynonymous SNV 0.577 2 24 hm5C_associated_SNPs_52486 0 0 0 0 1 NRK chrX:105169023 5'GT 105169023 Upstream 21bp
chr2 85866372 85866372 1 + A C LUAD 85866368 + 85866348 85866388 41 TGCTCCATAATGACGAGTACCAGGAGACAATGGTGGAGTCC TGCTCCATAATGACGAGTACCAGGCGACAATGGTGGAGTCC < 41bp 0.884827969933509 0.568792387479641 0.9255396 0.9221022 prediction 0.632071164907734 Functional Loss - USP39 ENSG00000168883 CDS Human protein_coding chr2:85866368 chr2:85866372 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_52487 0 0 1 0 1 USP39 chr2:85866326 3'AG 85866326 Downstream 47bp
chr15 25321010 25321010 1 + G T BLCA 25321007 + 25320987 25321027 41 CTTCAGGCTGGTGGATACCTCAGGATGGTAAGTATTGGTTT CTTCAGGCTGGTGGATACCTCAGTATGGTAAGTATTGGTTT < 41bp 0.816008215239726 0.481556939994036 0.7207537 0.23386136 prediction 0.632016430479452 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25321007 chr15:25321010 . . 0 24 hm5C_associated_SNPs_52491 0 0 1 0 1 SNHG14 chr15:25321013 5'GT 25321013 Upstream 4bp
chr11 8115651 8115651 1 + A C LUSC 8115647 + 8115627 8115667 41 GGGAGCCACGCGCCCAACAGCACCAGCTTCAGCCAAGAGAA GGGAGCCACGCGCCCAACAGCACCCGCTTCAGCCAAGAGAA < 41bp 0.815990508153295 0.4063315151764 0.26848015 0.16715842 prediction 0.63198101630659 Functional Loss - TUB ENSG00000166402 CDS Human protein_coding chr11:8115647 chr11:8115651 synonymous SNV . 0 25 hm5C_associated_SNPs_52492 0 0 0 0 2 TUB chr11:8115593 3'AG 8115593 Downstream 59bp
chr11 8115651 8115651 1 + A C LUSC 8115647 + 8115627 8115667 41 GGGAGCCACGCGCCCAACAGCACCAGCTTCAGCCAAGAGAA GGGAGCCACGCGCCCAACAGCACCCGCTTCAGCCAAGAGAA < 41bp 0.815990508153295 0.4063315151764 0.26848015 0.16715842 prediction 0.63198101630659 Functional Loss - TUB ENSG00000166402 CDS Human protein_coding chr11:8115647 chr11:8115651 synonymous SNV . 0 25 hm5C_associated_SNPs_52492 0 0 0 0 2 TUB chr11:8115736 5'GT 8115736 Upstream 86bp
chr15 44620907 44620907 1 + A C UCEC 44620903 + 44620883 44620923 41 AGCAACTTGCTGAGCTTCGTCAGGAATTTCTTCGACAAGAA AGCAACTTGCTGAGCTTCGTCAGGCATTTCTTCGACAAGAA < 41bp 0.886613092105809 0.570665058618175 0.67336464 0.66181076 prediction 0.631896066975269 Functional Loss - CASC4 ENSG00000166734 CDS Human protein_coding chr15:44620903 chr15:44620907 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_52495 0 0 1 0 2 CASC4 chr15:44620883 3'AG 44620883 Downstream 25bp
chr15 44620907 44620907 1 + A C UCEC 44620903 + 44620883 44620923 41 AGCAACTTGCTGAGCTTCGTCAGGAATTTCTTCGACAAGAA AGCAACTTGCTGAGCTTCGTCAGGCATTTCTTCGACAAGAA < 41bp 0.886613092105809 0.570665058618175 0.67336464 0.66181076 prediction 0.631896066975269 Functional Loss - CASC4 ENSG00000166734 CDS Human protein_coding chr15:44620903 chr15:44620907 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_52495 0 0 1 0 2 CASC4 chr15:44620985 5'GT 44620985 Upstream 79bp
chr11 2937874 2937874 1 + G T KIRP 2937871 + 2937851 2937891 41 GGATTCAGTGCCCGGCCATCCTGGCTGCCCTGGCCACCCTC GGATTCAGTGCCCGGCCATCCTGTCTGCCCTGGCCACCCTC < 41bp 0.815947834609861 0.437989484168257 0.8271159 0.2795952 prediction 0.631895669219721 Functional Loss - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2937871 chr11:2937874 nonsynonymous SNV 0.023 1 24 hm5C_associated_SNPs_52496 0 0 1 0 2 SLC22A18 chr11:2937852 3'AG 2937852 Downstream 23bp
chr11 2937874 2937874 1 + G T KIRP 2937871 + 2937851 2937891 41 GGATTCAGTGCCCGGCCATCCTGGCTGCCCTGGCCACCCTC GGATTCAGTGCCCGGCCATCCTGTCTGCCCTGGCCACCCTC < 41bp 0.815947834609861 0.437989484168257 0.8271159 0.2795952 prediction 0.631895669219721 Functional Loss - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2937871 chr11:2937874 nonsynonymous SNV 0.023 1 24 hm5C_associated_SNPs_52496 0 0 1 0 2 SLC22A18 chr11:2937970 5'GT 2937970 Upstream 97bp
chr16 68112664 68112664 1 + G T GBM 68112661 + 68112641 68112681 41 TGTCTGCTCAGGGACAAGTCCAAGAAACTGGCGGAGCAGGC TGTCTGCTCAGGGACAAGTCCAATAAACTGGCGGAGCAGGC < 41bp 0.815926452344881 0.453289160633291 0.6809217 0.26781315 prediction 0.631852904689763 Functional Loss - DUS2 ENSG00000167264 CDS Human protein_coding chr16:68112661 chr16:68112664 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_52501 0 0 1 0 1 DUS2 chr16:68112652 3'AG 68112652 Downstream 13bp
chr19 17885887 17885887 1 + G T LUSC 17885885 + 17885865 17885905 41 AGATTTCCTGGAGCCCGATTCAGGGGTGAGTGATGTGGGAG AGATTTCCTGGAGCCCGATTCATGGGTGAGTGATGTGGGAG < 41bp 0.827698454898776 0.511777686090823 0.95899254 0.8836874 prediction 0.631841537615905 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17885885 chr19:17885887 nonsynonymous SNV 0.964 0 23 hm5C_associated_SNPs_52502 0 0 1 0 2 FCHO1 chr19:17885865 3'AG 17885865 Downstream 23bp
chr19 17885887 17885887 1 + G T LUSC 17885885 + 17885865 17885905 41 AGATTTCCTGGAGCCCGATTCAGGGGTGAGTGATGTGGGAG AGATTTCCTGGAGCCCGATTCATGGGTGAGTGATGTGGGAG < 41bp 0.827698454898776 0.511777686090823 0.95899254 0.8836874 prediction 0.631841537615905 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17885885 chr19:17885887 nonsynonymous SNV 0.964 0 23 hm5C_associated_SNPs_52502 0 0 1 0 2 FCHO1 chr19:17885889 5'GT 17885889 Upstream 3bp
chr10 26506829 26506829 1 + G T LUAD 26506827 + 26506807 26506847 41 GCGGCGGGAGCCAACCCCCGCGGGCCGCCGCCCGGAAGGCC GCGGCGGGAGCCAACCCCCGCGTGCCGCCGCCCGGAAGGCC < 41bp 0.838973931720606 0.523082406112765 0.88626724 0.5882642 prediction 0.631783051215681 Functional Loss - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26506827 chr10:26506829 synonymous SNV . 0 23 hm5C_associated_SNPs_52505 0 0 0 0 2 GAD2 chr10:26506771 3'AG 26506771 Downstream 59bp
chr10 26506829 26506829 1 + G T LUAD 26506827 + 26506807 26506847 41 GCGGCGGGAGCCAACCCCCGCGGGCCGCCGCCCGGAAGGCC GCGGCGGGAGCCAACCCCCGCGTGCCGCCGCCCGGAAGGCC < 41bp 0.838973931720606 0.523082406112765 0.88626724 0.5882642 prediction 0.631783051215681 Functional Loss - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26506827 chr10:26506829 synonymous SNV . 0 23 hm5C_associated_SNPs_52505 0 0 0 0 2 GAD2 chr10:26506920 5'GT 26506920 Upstream 92bp
chr20 58342374 58342374 1 + G T LUSC 58342371 + 58342351 58342391 41 CCCAGACCTCTGGAGAGATCCGTGGGCCAGCTCCCCAGCCC CCCAGACCTCTGGAGAGATCCGTTGGCCAGCTCCCCAGCCC < 41bp 0.815868377041132 0.449892454313343 0.86357594 0.24931014 prediction 0.631736754082263 Functional Loss - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58342371 chr20:58342374 synonymous SNV . 0 24 hm5C_associated_SNPs_52507 0 0 0 0 1 PHACTR3 chr20:58342450 5'GT 58342450 Upstream 77bp
chr7 139221070 139221070 1 + A C KIRC 139221066 + 139221046 139221086 41 GCCATCGCGGTCCTTCTGTTCGCCATCTTGGTGGTGATGAG GCCATCGCGGTCCTTCTGTTCGCCCTCTTGGTGGTGATGAG < 41bp 0.815848872690433 0.413026342052938 0.34309793 0.022783458 prediction 0.631697745380867 Functional Loss - CLEC2L ENSG00000236279 CDS Human protein_coding chr7:139221066 chr7:139221070 nonsynonymous SNV 0.990 0 25 hm5C_associated_SNPs_52510 0 0 0 0 2 CLEC2L chr7:139221020 3'AG 139221020 Downstream 51bp
chr7 139221070 139221070 1 + A C KIRC 139221066 + 139221046 139221086 41 GCCATCGCGGTCCTTCTGTTCGCCATCTTGGTGGTGATGAG GCCATCGCGGTCCTTCTGTTCGCCCTCTTGGTGGTGATGAG < 41bp 0.815848872690433 0.413026342052938 0.34309793 0.022783458 prediction 0.631697745380867 Functional Loss - CLEC2L ENSG00000236279 CDS Human protein_coding chr7:139221066 chr7:139221070 nonsynonymous SNV 0.990 0 25 hm5C_associated_SNPs_52510 0 0 0 0 2 CLEC2L chr7:139221094 5'GT 139221094 Upstream 25bp
chr11 67258281 67258281 1 + G T SARC 67258278 + 67258258 67258298 41 GACAACGTCAAGGCCTACTTCAAGCGGGGCAAGGCCCACGC GACAACGTCAAGGCCTACTTCAATCGGGGCAAGGCCCACGC < 41bp 0.874789719305738 0.558954541230388 0.54894364 0.18247926 prediction 0.631670356150698 Functional Loss - AIP ENSG00000110711 CDS Human protein_coding chr11:67258278 chr11:67258281 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_52511 0 0 1 0 1 AIP chr11:67258259 3'AG 67258259 Downstream 23bp
chr12 50232354 50232354 1 + G T THCA 50232351 + 50232331 50232371 41 AATCTGATTGGGCATGTCACCTCGGATGGCAAGGGAGTGGA AATCTGATTGGGCATGTCACCTCTGATGGCAAGGGAGTGGA < 41bp 0.848186849110963 0.53236926116565 0.6613915 0.1882911 prediction 0.631635175890627 Functional Loss - BCDIN3D ENSG00000186666 CDS Human protein_coding chr12:50232351 chr12:50232354 synonymous SNV . 0 24 hm5C_associated_SNPs_52512 0 0 0 0 1 BCDIN3D chr12:50232423 5'GT 50232423 Upstream 70bp
chr15 29393906 29393906 1 + G T SARC 29393904 + 29393884 29393924 41 GCATGCCCCGGTCAGCCTCTCAGGACTGCATCGAGACCACG GCATGCCCCGGTCAGCCTCTCATGACTGCATCGAGACCACG < 41bp 0.82896891091242 0.51315919136179 0.91668105 0.46963584 prediction 0.63161943910126 Functional Loss - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29393904 chr15:29393906 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_52513 0 0 1 0 1 APBA2 chr15:29393987 5'GT 29393987 Upstream 82bp
chr8 42591710 42591710 1 + G T LUAD 42591707 + 42591687 42591727 41 CTGATAGTGTCAGTAACAGGCTCGGTTCTGATTTTTACCCC CTGATAGTGTCAGTAACAGGCTCTGTTCTGATTTTTACCCC < 41bp 0.815808221494313 0.469554127867973 0.2454108 0.159253 prediction 0.631616442988626 Functional Loss - CHRNB3 ENSG00000147432 CDS Human protein_coding chr8:42591707 chr8:42591710 synonymous SNV . 0 24 hm5C_associated_SNPs_52514 0 0 0 0 1 CHRNB3 chr8:42591627 3'AG 42591627 Downstream 84bp
chr16 27441400 27441400 1 + G T LUSC 27441397 + 27441377 27441417 41 GCCCGTGGGAGTCAGCATGCCGCGTGGCTGGGCCGCCCCCT GCCCGTGGGAGTCAGCATGCCGCTTGGCTGGGCCGCCCCCT < 41bp 0.880621747781464 0.564830135100384 0.32333237 0.17350769 prediction 0.631583225362161 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27441397 chr16:27441400 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_52515 0 0 0 0 2 IL21R chr16:27441377 3'AG 27441377 Downstream 24bp
chr16 27441400 27441400 1 + G T LUSC 27441397 + 27441377 27441417 41 GCCCGTGGGAGTCAGCATGCCGCGTGGCTGGGCCGCCCCCT GCCCGTGGGAGTCAGCATGCCGCTTGGCTGGGCCGCCCCCT < 41bp 0.880621747781464 0.564830135100384 0.32333237 0.17350769 prediction 0.631583225362161 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27441397 chr16:27441400 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_52515 0 0 0 0 2 IL21R chr16:27441441 5'GT 27441441 Upstream 42bp
chr3 102187859 102187859 1 + G T LUAD 102187857 + 102187837 102187877 41 TTGAGAATGGCCGAAGCCAGCGGGGCCGGTTTTCTTTTGAA TTGAGAATGGCCGAAGCCAGCGTGGCCGGTTTTCTTTTGAA < 41bp 0.815781886467946 0.497784393533008 0.9058167 0.7438079 prediction 0.631563772935893 Functional Loss - ZPLD1 ENSG00000170044 CDS Human protein_coding chr3:102187857 chr3:102187859 synonymous SNV . 0 23 hm5C_associated_SNPs_52516 0 0 0 0 1 ZPLD1 chr3:102187808 3'AG 102187808 Downstream 52bp
chr14 50081017 50081017 1 + G T UCEC 50081014 + 50080994 50081034 41 TCATTCCATTCCATCTCTGCCAAGATTTGGATACCGCAAAA TCATTCCATTCCATCTCTGCCAATATTTGGATACCGCAAAA < 41bp 0.81578123706081 0.472495344461769 0.28236184 0.12565926 prediction 0.63156247412162 Functional Loss - LRR1 ENSG00000165501 CDS Human protein_coding chr14:50081014 chr14:50081017 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52517 0 0 1 2 1 LRR1 chr14:50080974 3'AG 50080974 Downstream 44bp
chrX 78216053 78216053 1 + G T UCEC 78216050 + 78216030 78216070 41 GACAAATACACTGAAACATTCAAGATGGGTAGCAACAGTAC GACAAATACACTGAAACATTCAATATGGGTAGCAACAGTAC < 41bp 0.852766787460069 0.536993889140783 0.2768993 0.064449936 prediction 0.631545796638572 Functional Loss - P2RY10 ENSG00000078589 CDS Human protein_coding chrX:78216050 chrX:78216053 nonsynonymous SNV 0.981 1 24 hm5C_associated_SNPs_52518 0 0 0 0 1 P2RY10 chrX:78216005 3'AG 78216005 Downstream 49bp
chr16 67915010 67915010 1 + A C UCEC 67915006 + 67914986 67915026 41 AATGGCCTTCAGGAAAAGCACAAGAGCCTGGCCTTCCACCG AATGGCCTTCAGGAAAAGCACAAGCGCCTGGCCTTCCACCG < 41bp 0.883000751800615 0.56723574976037 0.40582305 0.37910044 prediction 0.631530004080489 Functional Loss - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67915006 chr16:67915010 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_52519 0 0 1 0 2 EDC4 chr16:67914979 3'AG 67914979 Downstream 32bp
chr16 67915010 67915010 1 + A C UCEC 67915006 + 67914986 67915026 41 AATGGCCTTCAGGAAAAGCACAAGAGCCTGGCCTTCCACCG AATGGCCTTCAGGAAAAGCACAAGCGCCTGGCCTTCCACCG < 41bp 0.883000751800615 0.56723574976037 0.40582305 0.37910044 prediction 0.631530004080489 Functional Loss - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67915006 chr16:67915010 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_52519 0 0 1 0 2 EDC4 chr16:67915083 5'GT 67915083 Upstream 74bp
chr1 32498920 32498920 1 + G T UCEC 32498917 + 32498897 32498937 41 GCCCATGCCATGGAGGAAGTCAAGAAATTTCTAGTACCGGT GCCCATGCCATGGAGGAAGTCAATAAATTTCTAGTACCGGT < 41bp 0.864375387315116 0.548610670583817 0.1259776 0.13163835 prediction 0.631529433462599 Functional Loss - KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32498917 chr1:32498920 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52520 0 0 1 0 1 KHDRBS1 chr1:32498935 5'GT 32498935 Upstream 16bp
chr16 29856149 29856149 1 + G T SARC 29856147 + 29856127 29856167 41 ACCCGGGACGCCCTGCAACGCAGCGTCCAGCTGGCCATCGA ACCCGGGACGCCCTGCAACGCATCGTCCAGCTGGCCATCGA < 41bp 0.822882803151732 0.507137588955076 0.37008864 0.04002136 prediction 0.631490428393312 Functional Loss - MVP ENSG00000013364 CDS Human protein_coding chr16:29856147 chr16:29856149 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_52522 0 0 0 0 1 MVP chr16:29856200 5'GT 29856200 Upstream 52bp
chr6 84772691 84772691 1 + G T READ 84772688 + 84772668 84772708 41 TTTGTGCTGACCTTGCTGACCAAGACAGGAGCCCCACACCA TTTGTGCTGACCTTGCTGACCAATACAGGAGCCCCACACCA < 41bp 0.815739854817131 0.451149546696807 0.17170054 0.09166393 prediction 0.631479709634262 Functional Loss - MRAP2 ENSG00000135324 CDS Human protein_coding chr6:84772688 chr6:84772691 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_52523 0 0 0 0 1 MRAP2 chr6:84772612 3'AG 84772612 Downstream 80bp
chr7 12680046 12680046 1 + G T UCEC 12680043 + 12680023 12680063 41 GACAAACCGCTCATTATTTACAAGAATGGAACATCAAAGAA GACAAACCGCTCATTATTTACAATAATGGAACATCAAAGAA < 41bp 0.815737940249293 0.464075291495349 0.069391936 0.035736054 prediction 0.631475880498586 Functional Loss - SCIN ENSG00000006747 CDS Human protein_coding chr7:12680043 chr7:12680046 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_52524 0 0 1 0 2 SCIN chr7:12679972 3'AG 12679972 Downstream 75bp
chr7 12680046 12680046 1 + G T UCEC 12680043 + 12680023 12680063 41 GACAAACCGCTCATTATTTACAAGAATGGAACATCAAAGAA GACAAACCGCTCATTATTTACAATAATGGAACATCAAAGAA < 41bp 0.815737940249293 0.464075291495349 0.069391936 0.035736054 prediction 0.631475880498586 Functional Loss - SCIN ENSG00000006747 CDS Human protein_coding chr7:12680043 chr7:12680046 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_52524 0 0 1 0 2 SCIN chr7:12680142 5'GT 12680142 Upstream 97bp
chr19 15726455 15726455 1 + G T LUAD 15726452 + 15726432 15726472 41 CGCTGCTGAGCCTGTCTTGGCTGGGCCTCAGGCCGGTGGCA CGCTGCTGAGCCTGTCTTGGCTGTGCCTCAGGCCGGTGGCA < 41bp 0.81573754224003 0.469154909279601 0.8134475 0.23841497 prediction 0.631475084480061 Functional Loss - CYP4F8 ENSG00000186526 ncRNA_exonic Human protein_coding chr19:15726452 chr19:15726455 . 0.005 2 24 hm5C_associated_SNPs_52525 0 0 0 0 1 CYP4F8 chr19:15726427 3'AG 15726427 Downstream 29bp
chr16 30490510 30490510 1 + G T LUAD 30490508 + 30490488 30490528 41 ATCTGCAGGGTCCCATGCTGCAGGGGCGCCCTGGTTTTCAG ATCTGCAGGGTCCCATGCTGCATGGGCGCCCTGGTTTTCAG < 41bp 0.831318488083061 0.515605158804022 0.9210145 0.2090008 prediction 0.631426658558079 Functional Loss - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30490508 chr16:30490510 nonsynonymous SNV 0.021 2 23 hm5C_associated_SNPs_52529 0 0 0 0 1 ITGAL chr16:30490412 3'AG 30490412 Downstream 99bp
chr4 119810229 119810229 1 + G T BLCA 119810226 + 119810206 119810246 41 TTTTATCTGCATTTCCATGACTGGAGGGGCGCCCTGGGGGT TTTTATCTGCATTTCCATGACTGTAGGGGCGCCCTGGGGGT < 41bp 0.815696085998155 0.474030723728293 0.37217987 0.31114376 prediction 0.63139217199631 Functional Loss - SYNPO2 ENSG00000172403 CDS Human protein_coding chr4:119810226 chr4:119810229 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_52532 0 0 0 0 1 SYNPO2 chr4:119810296 5'GT 119810296 Upstream 68bp
chr6 119226836 119226836 1 + G T BRCA 119226833 + 119226813 119226853 41 CTAGGCTGATGCACCTAATCCAGGACTCATTCCAGATGCAG CTAGGCTGATGCACCTAATCCAGTACTCATTCCAGATGCAG < 41bp 0.852631895260513 0.536945171557115 0.3315401 0.07218912 prediction 0.631373447406796 Functional Loss - ASF1A ENSG00000111875 CDS Human protein_coding chr6:119226833 chr6:119226836 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_52533 0 0 1 0 1 ASF1A chr6:119226817 3'AG 119226817 Downstream 20bp
chr14 62547585 62547585 1 + G T LUAD 62547583 + 62547563 62547603 41 GACCAATTTGCAGGTGCCATCCGGGGTCTCAGAGCCCATCT GACCAATTTGCAGGTGCCATCCTGGGTCTCAGAGCCCATCT < 41bp 0.839587690730415 0.523921263909262 0.9370292 0.8855972 prediction 0.631332853642306 Functional Loss - SYT16 ENSG00000139973 CDS Human protein_coding chr14:62547583 chr14:62547585 nonsynonymous SNV 0.028 1 23 hm5C_associated_SNPs_52535 0 0 0 0 1 SYT16 chr14:62547552 3'AG 62547552 Downstream 34bp
chr8 90782093 90782093 1 + A C STAD 90782089 + 90782069 90782109 41 CCAGAAGGAGGGACAATTATCTATATGCCACCTGAAAACTA CCAGAAGGAGGGACAATTATCTATCTGCCACCTGAAAACTA < 41bp 0.815656118198208 0.415240461631119 0.5742575 0.17641038 prediction 0.631312236396415 Functional Loss - RIPK2 ENSG00000104312 CDS Human protein_coding chr8:90782089 chr8:90782093 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_52536 0 0 1 0 2 RIPK2 chr8:90782000 3'AG 90782000 Downstream 94bp
chr8 90782093 90782093 1 + A C STAD 90782089 + 90782069 90782109 41 CCAGAAGGAGGGACAATTATCTATATGCCACCTGAAAACTA CCAGAAGGAGGGACAATTATCTATCTGCCACCTGAAAACTA < 41bp 0.815656118198208 0.415240461631119 0.5742575 0.17641038 prediction 0.631312236396415 Functional Loss - RIPK2 ENSG00000104312 CDS Human protein_coding chr8:90782089 chr8:90782093 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_52536 0 0 1 0 2 RIPK2 chr8:90782157 5'GT 90782157 Upstream 65bp
chr10 75552552 75552552 1 + G T LUAD 75552549 + 75552529 75552569 41 AGAGAAGGCCGAGGGCGGGGCTGGGGAGGAGCACGACCTGT AGAGAAGGCCGAGGGCGGGGCTGTGGAGGAGCACGACCTGT < 41bp 0.815631089518687 0.449320392641682 0.86668605 0.8264338 prediction 0.631262179037373 Functional Loss - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75552549 chr10:75552552 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_52539 0 0 1 0 1 ZSWIM8 chr10:75552610 5'GT 75552610 Upstream 59bp
chr6 170175417 170175417 1 + G T UCEC 170175415 + 170175395 170175435 41 TTGGGCTCTGCTGCCTTTCCCCGAAGAACTCACTCGGCAAG TTGGGCTCTGCTGCCTTTCCCCTAAGAACTCACTCGGCAAG < 41bp 0.815605316367517 0.486767955572353 0.7515131 0.12299538 prediction 0.631210632735034 Functional Loss - ERMARD ENSG00000130023 CDS Human protein_coding chr6:170175415 chr6:170175417 stopgain 0.000 0 23 hm5C_associated_SNPs_52540 0 0 1 0 2 ERMARD chr6:170175366 3'AG 170175366 Downstream 52bp
chr6 170175417 170175417 1 + G T UCEC 170175415 + 170175395 170175435 41 TTGGGCTCTGCTGCCTTTCCCCGAAGAACTCACTCGGCAAG TTGGGCTCTGCTGCCTTTCCCCTAAGAACTCACTCGGCAAG < 41bp 0.815605316367517 0.486767955572353 0.7515131 0.12299538 prediction 0.631210632735034 Functional Loss - ERMARD ENSG00000130023 CDS Human protein_coding chr6:170175415 chr6:170175417 stopgain 0.000 0 23 hm5C_associated_SNPs_52540 0 0 1 0 2 ERMARD chr6:170175442 5'GT 170175442 Upstream 26bp
chr1 158225877 158225877 1 + G T UCEC 158225874 + 158225854 158225894 41 GCTTCTTGCAGTTAGCTTATCAAGGATCAGACTTTGTGAGC GCTTCTTGCAGTTAGCTTATCAATGATCAGACTTTGTGAGC < 41bp 0.815542458027751 0.444426937202854 0.87435156 0.11812374 prediction 0.631084916055503 Functional Loss - CD1A ENSG00000158477 CDS Human protein_coding chr1:158225874 chr1:158225877 stopgain 0.006 0 24 hm5C_associated_SNPs_52544 0 0 0 0 1 CD1A chr1:158225794 3'AG 158225794 Downstream 84bp
chr12 111321859 111321859 1 + G T GBM 111321856 + 111321836 111321876 41 CTCAAGGCAAAGAAGCATGTCAAGAAGAACAGGGGAGAGAG CTCAAGGCAAAGAAGCATGTCAATAAGAACAGGGGAGAGAG < 41bp 0.815528853709315 0.44728639705337 0.4622233 0.26830846 prediction 0.631057707418629 Functional Loss - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111321856 chr12:111321859 nonsynonymous SNV 0.177 2 24 hm5C_associated_SNPs_52545 0 0 0 0 1 CCDC63 chr12:111321834 3'AG 111321834 Downstream 26bp
chr11 69458759 69458759 1 + G T STAD 69458757 + 69458737 69458777 41 CTTCGTTGCCCTCTGTGCCACAGGTAGGGCAGGCCCGGCAG CTTCGTTGCCCTCTGTGCCACATGTAGGGCAGGCCCGGCAG < 41bp 0.823079331706998 0.507557544722697 0.4404776 0.29990232 prediction 0.631043573968602 Functional Loss - CCND1 ENSG00000110092 CDS Human protein_coding chr11:69458757 chr11:69458759 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_52546 0 0 1 0 1 CCND1 chr11:69458759 5'GT 69458759 Upstream 1bp
chr2 231256883 231256883 1 + G T LUAD 231256880 + 231256860 231256900 41 TGAAATCAAAGGAGGCTACGCAAGATCAAAGAACTGGAGGC TGAAATCAAAGGAGGCTACGCAATATCAAAGAACTGGAGGC < 41bp 0.815500431424312 0.442142054566686 0.18993941 0.04490772 prediction 0.631000862848625 Functional Loss - SP140L ENSG00000185404 CDS Human protein_coding chr2:231256880 chr2:231256883 nonsynonymous SNV 0.029 2 24 hm5C_associated_SNPs_52548 0 0 1 0 2 SP140L chr2:231256802 3'AG 231256802 Downstream 82bp
chr2 231256883 231256883 1 + G T LUAD 231256880 + 231256860 231256900 41 TGAAATCAAAGGAGGCTACGCAAGATCAAAGAACTGGAGGC TGAAATCAAAGGAGGCTACGCAATATCAAAGAACTGGAGGC < 41bp 0.815500431424312 0.442142054566686 0.18993941 0.04490772 prediction 0.631000862848625 Functional Loss - SP140L ENSG00000185404 CDS Human protein_coding chr2:231256880 chr2:231256883 nonsynonymous SNV 0.029 2 24 hm5C_associated_SNPs_52548 0 0 1 0 2 SP140L chr2:231256944 5'GT 231256944 Upstream 62bp
chr10 75556724 75556724 1 + G T HNSC 75556722 + 75556702 75556742 41 TGCTCAACCAGGGAGTGTGGCAGGGGCTGGGCCAGGCCCCA TGCTCAACCAGGGAGTGTGGCATGGGCTGGGCCAGGCCCCA < 41bp 0.840611277247881 0.525118548932479 0.93109983 0.8568501 prediction 0.630985456630804 Functional Loss - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75556722 chr10:75556724 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_52550 0 0 1 0 1 ZSWIM8 chr10:75556772 5'GT 75556772 Upstream 49bp
chr12 6646779 6646779 1 + G T LUSC 6646777 + 6646757 6646797 41 TCCATGCCATCACTGCCACCCAGAAGACTGTGGATGGCCCC TCCATGCCATCACTGCCACCCATAAGACTGTGGATGGCCCC < 41bp 0.831564520275951 0.516073090049024 0.6172753 0.06589344 prediction 0.630982860453855 Functional Loss - GAPDH ENSG00000111640 CDS Human protein_coding chr12:6646777 chr12:6646779 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52551 0 0 1 0 1 GAPDH chr12:6646750 3'AG 6646750 Downstream 30bp
chr2 204255806 204255806 1 + G T LUSC 204255803 + 204255783 204255823 41 CATGAAGATGGGTGGGCTGCCGCGTACAACACCTCCAACTC CATGAAGATGGGTGGGCTGCCGCTTACAACACCTCCAACTC < 41bp 0.815454511154317 0.470554114826382 0.23386973 0.026120365 prediction 0.630909022308633 Functional Loss - ABI2 ENSG00000138443 CDS Human protein_coding chr2:204255803 chr2:204255806 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_52552 0 0 1 0 2 ABI2 chr2:204255769 3'AG 204255769 Downstream 38bp
chr2 204255806 204255806 1 + G T LUSC 204255803 + 204255783 204255823 41 CATGAAGATGGGTGGGCTGCCGCGTACAACACCTCCAACTC CATGAAGATGGGTGGGCTGCCGCTTACAACACCTCCAACTC < 41bp 0.815454511154317 0.470554114826382 0.23386973 0.026120365 prediction 0.630909022308633 Functional Loss - ABI2 ENSG00000138443 CDS Human protein_coding chr2:204255803 chr2:204255806 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_52552 0 0 1 0 2 ABI2 chr2:204255866 5'GT 204255866 Upstream 61bp
chr20 58318262 58318262 1 + G T LUSC 58318259 + 58318239 58318279 41 AGCAAACTGGCCACCCTGGGCAGGATCTTCAAACCCTGGAA AGCAAACTGGCCACCCTGGGCAGTATCTTCAAACCCTGGAA < 41bp 0.815447671419873 0.456971656220848 0.31199104 0.06547803 prediction 0.630895342839746 Functional Loss - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58318259 chr20:58318262 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_52554 0 0 0 0 1 PHACTR3 chr20:58318323 5'GT 58318323 Upstream 62bp
chr16 58497641 58497641 1 + G T rs574167371 58497638 + 58497618 58497658 41 TGGCTGCCCGCACCTGCACCCGCGCGTCGGCGGCGCCGAAG TGGCTGCCCGCACCTGCACCCGCTCGTCGGCGGCGCCGAAG < 41bp 0.824217456835939 0.508770066178588 0.849552 0.118454695 prediction 0.630894781314702 Functional Loss - NDRG4 ENSG00000103034 UTR5 Human protein_coding chr16:58497638 chr16:58497641 . . 0 24 hm5C_associated_SNPs_52555 0 0 1 0 1 NDRG4 chr16:58497701 5'GT 58497701 Upstream 61bp
chr22 50946826 50946826 1 + G T COAD 50946823 + 50946803 50946843 41 CAGCCCATCCGCGACCTCACCAAGAACTGGGAGGTGGACGT CAGCCCATCCGCGACCTCACCAATAACTGGGAGGTGGACGT < 41bp 0.862751463616525 0.547335783545022 0.48435166 0.08939338 prediction 0.630831360143006 Functional Loss - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50946823 chr22:50946826 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_52556 0 0 1 0 1 NCAPH2 chr22:50946874 5'GT 50946874 Upstream 49bp
chr9 139313053 139313053 1 + G T THYM 139313051 + 139313031 139313071 41 GTGTTGAACATGATGATGGGCGGAGGTGGCTCCTTCTCGGC GTGTTGAACATGATGATGGGCGTAGGTGGCTCCTTCTCGGC < 41bp 0.815390635904765 0.487296786079176 0.9073107 0.5757544 prediction 0.63078127180953 Functional Loss - PMPCA ENSG00000165688 CDS Human protein_coding chr9:139313051 chr9:139313053 nonsynonymous SNV 0.733 4 23 hm5C_associated_SNPs_52558 0 0 1 0 2 PMPCA chr9:139313007 3'AG 139313007 Downstream 47bp
chr9 139313053 139313053 1 + G T THYM 139313051 + 139313031 139313071 41 GTGTTGAACATGATGATGGGCGGAGGTGGCTCCTTCTCGGC GTGTTGAACATGATGATGGGCGTAGGTGGCTCCTTCTCGGC < 41bp 0.815390635904765 0.487296786079176 0.9073107 0.5757544 prediction 0.63078127180953 Functional Loss - PMPCA ENSG00000165688 CDS Human protein_coding chr9:139313051 chr9:139313053 nonsynonymous SNV 0.733 4 23 hm5C_associated_SNPs_52558 0 0 1 0 2 PMPCA chr9:139313125 5'GT 139313125 Upstream 73bp
chr11 67187062 67187062 1 + G T COAD 67187060 + 67187040 67187080 41 TGGACACAGTGCTGGCGCTGCTGGAGAAGCTGGAGGAGGAG TGGACACAGTGCTGGCGCTGCTTGAGAAGCTGGAGGAGGAG < 41bp 0.815354033695119 0.493688989490662 0.6229269 0.13488355 prediction 0.630708067390237 Functional Loss - CARNS1 ENSG00000172508;ENSG00000172531 CDS Human protein_coding chr11:67187060 chr11:67187062 nonsynonymous SNV 0.933 1 23 hm5C_associated_SNPs_52560 0 0 0 0 1 CARNS1 chr11:67187132 5'GT 67187132 Upstream 71bp
chr1 200090030 200090030 1 + A C UCEC 200090026 + 200090006 200090046 41 TAGTGGCAAAACTTCGTTCTCTCCAGTTTGATCAACGAGAG TAGTGGCAAAACTTCGTTCTCTCCCGTTTGATCAACGAGAG < 41bp 0.815272675625016 0.409197222924375 0.32635984 0.014521629 prediction 0.630545351250033 Functional Loss - NR5A2 ENSG00000116833 CDS Human protein_coding chr1:200090026 chr1:200090030 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_52564 0 0 0 0 2 NR5A2 chr1:200089936 3'AG 200089936 Downstream 95bp
chr1 200090030 200090030 1 + A C UCEC 200090026 + 200090006 200090046 41 TAGTGGCAAAACTTCGTTCTCTCCAGTTTGATCAACGAGAG TAGTGGCAAAACTTCGTTCTCTCCCGTTTGATCAACGAGAG < 41bp 0.815272675625016 0.409197222924375 0.32635984 0.014521629 prediction 0.630545351250033 Functional Loss - NR5A2 ENSG00000116833 CDS Human protein_coding chr1:200090026 chr1:200090030 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_52564 0 0 0 0 2 NR5A2 chr1:200090083 5'GT 200090083 Upstream 54bp
chr9 37732384 37732384 1 + G T LUAD 37732382 + 37732362 37732402 41 GACTCGCGGCTCTGCACATCCAGGAACGGATCTACGCCTGT GACTCGCGGCTCTGCACATCCATGAACGGATCTACGCCTGT < 41bp 0.828985594770104 0.513721202810045 0.5152966 0.18819886 prediction 0.630528783920117 Functional Loss - FRMPD1 ENSG00000070601 CDS Human protein_coding chr9:37732382 chr9:37732384 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_52565 0 0 0 0 1 FRMPD1 chr9:37732301 3'AG 37732301 Downstream 84bp
chr6 43029080 43029080 1 + G T UCEC 43029078 + 43029058 43029098 41 GGTCCCCCAGGCCAGGATGTCAGGCCTGGTGTTGGGGCAGC GGTCCCCCAGGCCAGGATGTCATGCCTGGTGTTGGGGCAGC < 41bp 0.815245319040542 0.493607331935017 0.9009136 0.44645602 prediction 0.630490638081084 Functional Loss - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43029078 chr6:43029080 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_52567 0 0 1 0 1 KLC4 chr6:43029049 3'AG 43029049 Downstream 32bp
chr1 68151204 68151204 1 + A C rs532285587 68151200 + 68151180 68151220 41 GACTTTGGAGGAATTCTCGGCTGGAGAGCAGAAGACCGAAA GACTTTGGAGGAATTCTCGGCTGGCGAGCAGAAGACCGAAA < 41bp 0.863575004611122 0.548330289131637 0.3306868 0.289778 prediction 0.63048943095897 Functional Loss - GADD45A ENSG00000116717 CDS Human protein_coding chr1:68151200 chr1:68151204 synonymous SNV . 0 25 hm5C_associated_SNPs_52568 0 0 1 0 1 GADD45A chr1:68151221 5'GT 68151221 Upstream 18bp
chr14 54989263 54989263 1 + A C CESC 54989259 + 54989239 54989279 41 AAAAAGCAAATGAGACAAGTCAAGAATCCTTTTGGCTTAGA AAAAAGCAAATGAGACAAGTCAAGCATCCTTTTGGCTTAGA < 41bp 0.815235342470564 0.438420604881063 0.6145634 0.121142566 prediction 0.630470684941129 Functional Loss - CGRRF1 ENSG00000100532 CDS Human protein_coding chr14:54989259 chr14:54989263 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_52569 0 0 0 0 2 CGRRF1 chr14:54989172 3'AG 54989172 Downstream 92bp
chr14 54989263 54989263 1 + A C CESC 54989259 + 54989239 54989279 41 AAAAAGCAAATGAGACAAGTCAAGAATCCTTTTGGCTTAGA AAAAAGCAAATGAGACAAGTCAAGCATCCTTTTGGCTTAGA < 41bp 0.815235342470564 0.438420604881063 0.6145634 0.121142566 prediction 0.630470684941129 Functional Loss - CGRRF1 ENSG00000100532 CDS Human protein_coding chr14:54989259 chr14:54989263 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_52569 0 0 0 0 2 CGRRF1 chr14:54989311 5'GT 54989311 Upstream 49bp
chr19 56693570 56693570 1 + G T BLCA 56693567 + 56693547 56693587 41 ACCTTCCCCAAATGGGTGACCAAGACGGAAAGAGGGAGACA ACCTTCCCCAAATGGGTGACCAATACGGAAAGAGGGAGACA < 41bp 0.815177046989557 0.442416010610977 0.16237295 0.0871025 prediction 0.630354093979113 Functional Loss - GALP ENSG00000197487 CDS Human protein_coding chr19:56693567 chr19:56693570 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_52573 0 0 0 0 2 GALP chr19:56693541 3'AG 56693541 Downstream 30bp
chr19 56693570 56693570 1 + G T BLCA 56693567 + 56693547 56693587 41 ACCTTCCCCAAATGGGTGACCAAGACGGAAAGAGGGAGACA ACCTTCCCCAAATGGGTGACCAATACGGAAAGAGGGAGACA < 41bp 0.815177046989557 0.442416010610977 0.16237295 0.0871025 prediction 0.630354093979113 Functional Loss - GALP ENSG00000197487 CDS Human protein_coding chr19:56693567 chr19:56693570 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_52573 0 0 0 0 2 GALP chr19:56693621 5'GT 56693621 Upstream 52bp
chr10 123987437 123987437 1 + G T SKCM 123987434 + 123987414 123987454 41 CACGAGGACTGGCCCCTAACCAAGAGTCACACTTGCAGGTG CACGAGGACTGGCCCCTAACCAATAGTCACACTTGCAGGTG < 41bp 0.847304389475402 0.532155882259247 0.67759836 0.21297216 prediction 0.63029701443231 Functional Loss - TACC2 ENSG00000138162 CDS Human protein_coding chr10:123987434 chr10:123987437 stopgain 0.876 0 24 hm5C_associated_SNPs_52578 0 0 1 0 2 TACC2 chr10:123987352 3'AG 123987352 Downstream 86bp
chr10 123987437 123987437 1 + G T SKCM 123987434 + 123987414 123987454 41 CACGAGGACTGGCCCCTAACCAAGAGTCACACTTGCAGGTG CACGAGGACTGGCCCCTAACCAATAGTCACACTTGCAGGTG < 41bp 0.847304389475402 0.532155882259247 0.67759836 0.21297216 prediction 0.63029701443231 Functional Loss - TACC2 ENSG00000138162 CDS Human protein_coding chr10:123987434 chr10:123987437 stopgain 0.876 0 24 hm5C_associated_SNPs_52578 0 0 1 0 2 TACC2 chr10:123987523 5'GT 123987523 Upstream 87bp
chr20 36028539 36028539 1 + G T SARC 36028537 + 36028517 36028557 41 GGGACCTGGAACGGTACCACCAGGGTGGCCATCAAAACCCT GGGACCTGGAACGGTACCACCATGGTGGCCATCAAAACCCT < 41bp 0.815130418383657 0.477533248774533 0.92691076 0.20941946 prediction 0.630260836767314 Functional Loss - SRC ENSG00000197122 CDS Human protein_coding chr20:36028537 chr20:36028539 nonsynonymous SNV 0.927 3 23 hm5C_associated_SNPs_52581 0 0 1 0 1 SRC chr20:36028518 3'AG 36028518 Downstream 22bp
chr7 151716788 151716788 1 + G T PAAD 151716785 + 151716765 151716805 41 ATGTCACCTACGGAAATATTCGCGAGCGTGTTGAGTTAAGG ATGTCACCTACGGAAATATTCGCTAGCGTGTTGAGTTAAGG < 41bp 0.859794115121124 0.544668008267722 0.3117503 0.12023708 prediction 0.630252213706804 Functional Loss - GALNTL5 ENSG00000106648 CDS Human protein_coding chr7:151716785 chr7:151716788 stopgain 0.002 0 24 hm5C_associated_SNPs_52582 0 0 0 0 1 GALNTL5 chr7:151716731 3'AG 151716731 Downstream 58bp
chr1 11867208 11867208 1 + G T UCEC 11867206 + 11867186 11867226 41 AGACCATCCTTGGAGAAACACAGGAGGAGGAGGATGAGATT AGACCATCCTTGGAGAAACACATGAGGAGGAGGATGAGATT < 41bp 0.825126171401018 0.510075763118844 0.8980706 0.24134567 prediction 0.630100816564348 Functional Loss - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11867206 chr1:11867208 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_52583 0 0 1 0 2 CLCN6 chr1:11867188 3'AG 11867188 Downstream 21bp
chr1 11867208 11867208 1 + G T UCEC 11867206 + 11867186 11867226 41 AGACCATCCTTGGAGAAACACAGGAGGAGGAGGATGAGATT AGACCATCCTTGGAGAAACACATGAGGAGGAGGATGAGATT < 41bp 0.825126171401018 0.510075763118844 0.8980706 0.24134567 prediction 0.630100816564348 Functional Loss - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11867206 chr1:11867208 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_52583 0 0 1 0 2 CLCN6 chr1:11867247 5'GT 11867247 Upstream 40bp
chr15 84581906 84581906 1 + A C LUSC 84581902 + 84581882 84581922 41 GTGGGCCGGGTGTGCAGGTCCGTGAGGTGAAGTGCCGTGTG GTGGGCCGGGTGTGCAGGTCCGTGCGGTGAAGTGCCGTGTG < 41bp 0.815005335160116 0.451374517045753 0.7122874 0.71387243 prediction 0.630010670320233 Functional Loss - ADAMTSL3 ENSG00000156218 CDS Human protein_coding chr15:84581902 chr15:84581906 nonsynonymous SNV 0.970 0 25 hm5C_associated_SNPs_52584 0 0 0 0 1 ADAMTSL3 chr15:84581844 3'AG 84581844 Downstream 63bp
chr1 231337175 231337175 1 + A C UCEC 231337171 + 231337151 231337191 41 GGTCAAAGGCGCCCTGGAGCCGAAAGTGTCTGCGGAGTTTG GGTCAAAGGCGCCCTGGAGCCGAACGTGTCTGCGGAGTTTG < 41bp 0.814973484880303 0.42558862325068 0.50375587 0.3900033 prediction 0.629946969760607 Functional Loss - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231337171 chr1:231337175 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_52589 0 0 0 0 2 TRIM67 chr1:231337104 3'AG 231337104 Downstream 72bp
chr1 231337175 231337175 1 + A C UCEC 231337171 + 231337151 231337191 41 GGTCAAAGGCGCCCTGGAGCCGAAAGTGTCTGCGGAGTTTG GGTCAAAGGCGCCCTGGAGCCGAACGTGTCTGCGGAGTTTG < 41bp 0.814973484880303 0.42558862325068 0.50375587 0.3900033 prediction 0.629946969760607 Functional Loss - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231337171 chr1:231337175 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_52589 0 0 0 0 2 TRIM67 chr1:231337263 5'GT 231337263 Upstream 89bp
chr1 160100252 160100252 1 + G T LUAD 160100250 + 160100230 160100270 41 TGCCATCTGGAAAGTTTCCTCGGGGCTTCAAATTCGACACG TGCCATCTGGAAAGTTTCCTCGTGGCTTCAAATTCGACACG < 41bp 0.834779098562335 0.519839609660768 0.91276884 0.26899964 prediction 0.629878977803134 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160100250 chr1:160100252 synonymous SNV . 0 23 hm5C_associated_SNPs_52594 0 0 0 0 1 ATP1A2 chr1:160100212 3'AG 160100212 Downstream 41bp
chr2 10559959 10559959 1 + G T LUSC 10559956 + 10559936 10559976 41 AGAACACGGAGTTCACCGACCACGAGCTGCAGGAGTGGTAC AGAACACGGAGTTCACCGACCACTAGCTGCAGGAGTGGTAC < 41bp 0.814933952101941 0.457629942956453 0.6464266 0.27203178 prediction 0.629867904203883 Functional Loss - HPCAL1 ENSG00000115756 CDS Human protein_coding chr2:10559956 chr2:10559959 stopgain 1.000 1 24 hm5C_associated_SNPs_52595 0 0 0 0 1 HPCAL1 chr2:10559860 3'AG 10559860 Downstream 100bp
chr19 42399497 42399497 1 + G T STAD 42399494 + 42399474 42399514 41 GGACCGGAATATCGGGGCTCCTGGGCAGGACACCCCTGGAG GGACCGGAATATCGGGGCTCCTGTGCAGGACACCCCTGGAG < 41bp 0.814931688618348 0.454066698776774 0.9265423 0.32070464 prediction 0.629863377236696 Functional Loss - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42399494 chr19:42399497 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_52596 0 0 1 0 1 ARHGEF1 chr19:42399559 5'GT 42399559 Upstream 63bp
chr6 117037417 117037417 1 + G T UCEC 117037414 + 117037394 117037434 41 TTCAAACAGACTCACAACAACAAGAAATGCCGTGTGGGCCC TTCAAACAGACTCACAACAACAATAAATGCCGTGTGGGCCC < 41bp 0.814919122128905 0.458648346161546 0.22190061 0.15521058 prediction 0.629838244257809 Functional Loss - KPNA5 ENSG00000196911 CDS Human protein_coding chr6:117037414 chr6:117037417 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_52597 0 0 1 0 2 KPNA5 chr6:117037382 3'AG 117037382 Downstream 36bp
chr6 117037417 117037417 1 + G T UCEC 117037414 + 117037394 117037434 41 TTCAAACAGACTCACAACAACAAGAAATGCCGTGTGGGCCC TTCAAACAGACTCACAACAACAATAAATGCCGTGTGGGCCC < 41bp 0.814919122128905 0.458648346161546 0.22190061 0.15521058 prediction 0.629838244257809 Functional Loss - KPNA5 ENSG00000196911 CDS Human protein_coding chr6:117037414 chr6:117037417 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_52597 0 0 1 0 2 KPNA5 chr6:117037481 5'GT 117037481 Upstream 65bp
chr22 39477577 39477577 1 + G T LUAD 39477574 + 39477554 39477594 41 ATATATTACTGCACATCATGCTGGGGGAGATTCTCAGGTGA ATATATTACTGCACATCATGCTGTGGGAGATTCTCAGGTGA < 41bp 0.814911698225818 0.443264804447572 0.4107355 0.10369912 prediction 0.629823396451637 Functional Loss - APOBEC3G ENSG00000239713 CDS Human protein_coding chr22:39477574 chr22:39477577 nonsynonymous SNV 0.000 3 24 hm5C_associated_SNPs_52598 0 0 0 0 1 APOBEC3G chr22:39477590 5'GT 39477590 Upstream 14bp
chr10 85972083 85972083 1 + G T UCS 85972080 + 85972060 85972100 41 CTGAGGTGTTTATCACACTGCTGGATGTCAATGACCACCCC CTGAGGTGTTTATCACACTGCTGTATGTCAATGACCACCCC < 41bp 0.814898020318381 0.446347069599986 0.26046968 0.103836805 prediction 0.629796040636762 Functional Loss - CDHR1 ENSG00000148600 CDS Human protein_coding chr10:85972080 chr10:85972083 nonsynonymous SNV 0.373 4 24 hm5C_associated_SNPs_52601 0 0 0 0 1 CDHR1 chr10:85972163 5'GT 85972163 Upstream 81bp
chr1 180775252 180775252 1 + G T LUAD 180775249 + 180775229 180775269 41 TGAAAAAGCATGACAAGATCCTGGAAACATCTCGTGGAGCA TGAAAAAGCATGACAAGATCCTGTAAACATCTCGTGGAGCA < 41bp 0.814884357795717 0.476603706145364 0.37497357 0.077346355 prediction 0.629768715591434 Functional Loss - XPR1 ENSG00000143324 CDS Human protein_coding chr1:180775249 chr1:180775252 stopgain 1.000 1 24 hm5C_associated_SNPs_52604 0 0 1 0 2 XPR1 chr1:180775198 3'AG 180775198 Downstream 55bp
chr1 180775252 180775252 1 + G T LUAD 180775249 + 180775229 180775269 41 TGAAAAAGCATGACAAGATCCTGGAAACATCTCGTGGAGCA TGAAAAAGCATGACAAGATCCTGTAAACATCTCGTGGAGCA < 41bp 0.814884357795717 0.476603706145364 0.37497357 0.077346355 prediction 0.629768715591434 Functional Loss - XPR1 ENSG00000143324 CDS Human protein_coding chr1:180775249 chr1:180775252 stopgain 1.000 1 24 hm5C_associated_SNPs_52604 0 0 1 0 2 XPR1 chr1:180775347 5'GT 180775347 Upstream 96bp
chr10 5415744 5415744 1 + G T UCEC 5415742 + 5415722 5415762 41 GCTCCTGGGGGGCCCCAGGACAGGCCTCCCCCACAAGTTCT GCTCCTGGGGGGCCCCAGGACATGCCTCCCCCACAAGTTCT < 41bp 0.814852404642455 0.486595018472031 0.48360252 0.33585763 prediction 0.629704809284911 Functional Loss - UCN3 ENSG00000178473 CDS Human protein_coding chr10:5415742 chr10:5415744 nonsynonymous SNV 0.096 2 23 hm5C_associated_SNPs_52606 0 0 0 0 1 UCN3 chr10:5415678 3'AG 5415678 Downstream 67bp
chr21 18816502 18816502 1 + G T rs182117802 18816499 + 18816479 18816519 41 AATCCTCCTGCCTCAGCCTTCTGGGTAGTTGAGACTACAGG AATCCTCCTGCCTCAGCCTTCTGTGTAGTTGAGACTACAGG < 41bp 0.814848904794625 0.466467456937136 0.2172972 0.11107364 prediction 0.629697809589249 Functional Loss - LINC01549 ENSG00000232560 CDS Human lincRNA chr21:18816499 chr21:18816502 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_52607 0 0 0 0 1 LINC01549 chr21:18816518 5'GT 18816518 Upstream 17bp
chr22 50635953 50635953 1 + G T SARC 50635951 + 50635931 50635971 41 CACCTTCAAGAGGGCCATCGCAGCGCTCTCCTTCTGGCAGA CACCTTCAAGAGGGCCATCGCATCGCTCTCCTTCTGGCAGA < 41bp 0.814831358381137 0.493374487976674 0.91577494 0.41610956 prediction 0.629662716762274 Functional Loss - TRABD ENSG00000170638 CDS Human protein_coding chr22:50635951 chr22:50635953 nonsynonymous SNV 0.083 1 23 hm5C_associated_SNPs_52609 0 0 1 0 2 TRABD chr22:50635878 3'AG 50635878 Downstream 76bp
chr22 50635953 50635953 1 + G T SARC 50635951 + 50635931 50635971 41 CACCTTCAAGAGGGCCATCGCAGCGCTCTCCTTCTGGCAGA CACCTTCAAGAGGGCCATCGCATCGCTCTCCTTCTGGCAGA < 41bp 0.814831358381137 0.493374487976674 0.91577494 0.41610956 prediction 0.629662716762274 Functional Loss - TRABD ENSG00000170638 CDS Human protein_coding chr22:50635951 chr22:50635953 nonsynonymous SNV 0.083 1 23 hm5C_associated_SNPs_52609 0 0 1 0 2 TRABD chr22:50636017 5'GT 50636017 Upstream 65bp
chr2 64683599 64683599 1 + G T STAD 64683596 + 64683576 64683616 41 TTCATTCCAGACCAGCCATTCAGGGTGAGTACCTCGAGTGC TTCATTCCAGACCAGCCATTCAGTGTGAGTACCTCGAGTGC < 41bp 0.866270718828058 0.551459095209505 0.93767416 0.38154963 prediction 0.629623247237106 Functional Loss - LGALSL ENSG00000119862 CDS Human protein_coding chr2:64683596 chr2:64683599 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_52611 0 0 1 0 1 LGALSL chr2:64683599 3'AG 64683599 Downstream 1bp
chr1 156628475 156628475 1 + G T UCEC 156628472 + 156628452 156628492 41 ATCTGCCGCTGATCCGATGCCAAGAGAACGGTCGTTGGGAG ATCTGCCGCTGATCCGATGCCAATAGAACGGTCGTTGGGAG < 41bp 0.874962458826874 0.560151289134362 0.74253696 0.2115494 prediction 0.629622339385024 Functional Loss - BCAN ENSG00000132692 CDS Human protein_coding chr1:156628472 chr1:156628475 stopgain 0.513 0 24 hm5C_associated_SNPs_52612 0 0 0 0 1 BCAN chr1:156628525 5'GT 156628525 Upstream 51bp
chr7 107314747 107314747 1 + G T BLCA 107314744 + 107314724 107314764 41 CACTGCAGCTAGAGATACAGCTAGAGTCCTGATTGCCAGTG CACTGCAGCTAGAGATACAGCTATAGTCCTGATTGCCAGTG < 41bp 0.861968967045895 0.547161822449934 0.1466474 0.17060527 prediction 0.629614289191921 Functional Loss - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107314744 chr7:107314747 nonsynonymous SNV 0.081 5 24 hm5C_associated_SNPs_52613 0 0 0 0 1 SLC26A4 chr7:107314793 5'GT 107314793 Upstream 47bp
chr16 67685845 67685845 1 + G T THCA 67685842 + 67685822 67685862 41 AGGGACATGCGGCTATCAATCACGGGGACCTTGGCAGAGAG AGGGACATGCGGCTATCAATCACTGGGACCTTGGCAGAGAG < 41bp 0.878983870760772 0.564198921850051 0.93297696 0.41245478 prediction 0.629569897821442 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67685842 chr16:67685845 synonymous SNV . 0 24 hm5C_associated_SNPs_52616 0 0 0 0 2 CARMIL2 chr16:67685824 3'AG 67685824 Downstream 22bp
chr16 67685845 67685845 1 + G T THCA 67685842 + 67685822 67685862 41 AGGGACATGCGGCTATCAATCACGGGGACCTTGGCAGAGAG AGGGACATGCGGCTATCAATCACTGGGACCTTGGCAGAGAG < 41bp 0.878983870760772 0.564198921850051 0.93297696 0.41245478 prediction 0.629569897821442 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67685842 chr16:67685845 synonymous SNV . 0 24 hm5C_associated_SNPs_52616 0 0 0 0 2 CARMIL2 chr16:67685911 5'GT 67685911 Upstream 67bp
chr15 101592076 101592076 1 + G T GBM 101592074 + 101592054 101592094 41 GTGTCCTGACGGCCATCGAGCGGGACTTCATCTCCTGCCCC GTGTCCTGACGGCCATCGAGCGTGACTTCATCTCCTGCCCC < 41bp 0.814777453502736 0.49770199464856 0.9056934 0.3421569 prediction 0.629554907005472 Functional Loss - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101592074 chr15:101592076 synonymous SNV . 0 23 hm5C_associated_SNPs_52617 0 0 0 0 1 LRRK1 chr15:101592165 5'GT 101592165 Upstream 90bp
chr9 116359106 116359106 1 + G T BLCA 116359103 + 116359083 116359123 41 GGACAACCTGCAGAGCGTCACGCGGGGCTGCTTCGACCTGG GGACAACCTGCAGAGCGTCACGCTGGGCTGCTTCGACCTGG < 41bp 0.821409509549534 0.506633559961221 0.93134147 0.37313223 prediction 0.629551899176625 Functional Loss - RGS3 ENSG00000138835 CDS Human protein_coding chr9:116359103 chr9:116359106 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_52618 0 0 0 0 1 RGS3 chr9:116359048 3'AG 116359048 Downstream 59bp
chr2 98354521 98354521 1 + G T UCEC 98354518 + 98354498 98354538 41 GCAAGCGGATGGAGTGCCCACCAGAGTGTCCACCCGAACTG GCAAGCGGATGGAGTGCCCACCATAGTGTCCACCCGAACTG < 41bp 0.81476758501011 0.444976626646143 0.53231955 0.21470779 prediction 0.629535170020221 Functional Loss - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98354518 chr2:98354521 stopgain 0.476 1 24 hm5C_associated_SNPs_52619 0 0 0 0 2 ZAP70 chr2:98354458 3'AG 98354458 Downstream 64bp
chr2 98354521 98354521 1 + G T UCEC 98354518 + 98354498 98354538 41 GCAAGCGGATGGAGTGCCCACCAGAGTGTCCACCCGAACTG GCAAGCGGATGGAGTGCCCACCATAGTGTCCACCCGAACTG < 41bp 0.81476758501011 0.444976626646143 0.53231955 0.21470779 prediction 0.629535170020221 Functional Loss - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98354518 chr2:98354521 stopgain 0.476 1 24 hm5C_associated_SNPs_52619 0 0 0 0 2 ZAP70 chr2:98354570 5'GT 98354570 Upstream 50bp
chr11 125781322 125781322 1 + G T THCA 125781319 + 125781299 125781339 41 CTAAGATTCGTGTGTTTGTCCTGGATGAAGCAGATGTGATG CTAAGATTCGTGTGTTTGTCCTGTATGAAGCAGATGTGATG < 41bp 0.81476209383267 0.463154952630573 0.17633525 0.13849542 prediction 0.629524187665339 Functional Loss - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125781319 chr11:125781322 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52620 0 0 1 0 1 DDX25 chr11:125781383 5'GT 125781383 Upstream 62bp
chr3 186917353 186917353 1 + G T THCA 186917351 + 186917331 186917371 41 CTCCGCAGGTTCCACTGCTCCTGGTGCTGGCACACCTGGCA CTCCGCAGGTTCCACTGCTCCTTGTGCTGGCACACCTGGCA < 41bp 0.821433729540318 0.506683623103618 0.383933 0.20419514 prediction 0.6295002128734 Functional Loss - RTP1 ENSG00000175077 CDS Human protein_coding chr3:186917351 chr3:186917353 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_52622 0 0 0 0 1 RTP1 chr3:186917339 3'AG 186917339 Downstream 15bp
chr16 20471598 20471598 1 + G T LUAD 20471595 + 20471575 20471615 41 GCTAGTGATGTGTTGGATCACTGGGCTGACATGGAGAAGGT GCTAGTGATGTGTTGGATCACTGTGCTGACATGGAGAAGGT < 41bp 0.814737893764993 0.45964584039218 0.8821856 0.20788318 prediction 0.629475787529985 Functional Loss - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20471595 chr16:20471598 nonsynonymous SNV 0.891 4 24 hm5C_associated_SNPs_52623 0 0 0 1 1 ACSM2A chr16:20471613 5'GT 20471613 Upstream 16bp
chr22 45182426 45182426 1 + G T SARC 45182424 + 45182404 45182444 41 GCCCATGGCTGGCCAGGATCCTGCGCTGAGCACGAGTCACC GCCCATGGCTGGCCAGGATCCTTCGCTGAGCACGAGTCACC < 41bp 0.814732676145438 0.48086493711461 0.42640164 0.25827074 prediction 0.629465352290875 Functional Loss - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45182424 chr22:45182426 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_52624 0 0 0 0 1 ARHGAP8;PRR5-ARHGAP8 chr22:45182486 5'GT 45182486 Upstream 61bp
chr15 27188372 27188372 1 + G T LUSC 27188369 + 27188349 27188389 41 CTGACCCCCGCAGGGGTCACCACGGTGCTGACCATGACGAC CTGACCCCCGCAGGGGTCACCACTGTGCTGACCATGACGAC < 41bp 0.814729625517089 0.436564667343441 0.92186797 0.30337626 prediction 0.629459251034179 Functional Loss - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27188369 chr15:27188372 synonymous SNV . 0 24 hm5C_associated_SNPs_52625 0 0 0 0 1 GABRA5 chr15:27188362 3'AG 27188362 Downstream 11bp
chr7 2740310 2740310 1 + G T UCEC 2740307 + 2740287 2740327 41 CTGAGCCGACCCGAGGCTCCCGAGGACTTCCAGACCTTCCA CTGAGCCGACCCGAGGCTCCCGATGACTTCCAGACCTTCCA < 41bp 0.814690948110038 0.436798311765188 0.91640294 0.6297891 prediction 0.629381896220077 Functional Loss - AMZ1 ENSG00000174945 CDS Human protein_coding chr7:2740307 chr7:2740310 nonsynonymous SNV 0.865 3 24 hm5C_associated_SNPs_52628 0 0 0 0 1 AMZ1 chr7:2740389 5'GT 2740389 Upstream 80bp
chr1 151499552 151499552 1 + G T LIHC 151499549 + 151499529 151499569 41 AGAGCAGGCCCGAGCTAGTGCTGGAGATACTCGCCAGGTTG AGAGCAGGCCCGAGCTAGTGCTGTAGATACTCGCCAGGTTG < 41bp 0.881797701409039 0.567117844657159 0.53727275 0.26381618 prediction 0.62935971350376 Functional Loss - CGN ENSG00000143375 CDS Human protein_coding chr1:151499549 chr1:151499552 nonsynonymous SNV 0.942 0 24 hm5C_associated_SNPs_52629 0 0 0 0 1 CGN chr1:151499583 5'GT 151499583 Upstream 32bp
chr16 68844204 68844204 1 + G T LGG 68844202 + 68844182 68844222 41 ACAACAAGCCCGAATTCACCCAGGAGGTCTTTAAGGGGTCT ACAACAAGCCCGAATTCACCCATGAGGTCTTTAAGGGGTCT < 41bp 0.82954300148774 0.514876502539319 0.78765047 0.15126577 prediction 0.629332997896842 Functional Loss - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68844202 chr16:68844204 nonsynonymous SNV 0.275 1 23 hm5C_associated_SNPs_52630 0 0 0 0 1 CDH1 chr16:68844244 5'GT 68844244 Upstream 41bp
chr4 17524636 17524636 1 + G T COAD 17524634 + 17524614 17524654 41 GTACCGGGCAGTCAGCGGTCCTGGGGGCATCTGCCTATGGA GTACCGGGCAGTCAGCGGTCCTTGGGGCATCTGCCTATGGA < 41bp 0.814650257474275 0.491672254063482 0.89149815 0.24566439 prediction 0.62930051494855 Functional Loss - CLRN2 ENSG00000249581 CDS Human protein_coding chr4:17524634 chr4:17524636 nonsynonymous SNV 0.477 1 23 hm5C_associated_SNPs_52631 0 0 0 0 1 CLRN2 chr4:17524666 5'GT 17524666 Upstream 31bp
chr19 15640547 15640547 1 + G T GBM 15640544 + 15640524 15640564 41 TTCCAAATGAGGCGGGCCTTCAAGATGAGAAGAAGGTACTG TTCCAAATGAGGCGGGCCTTCAATATGAGAAGAAGGTACTG < 41bp 0.873205262324027 0.558577843061027 0.83193904 0.32280487 prediction 0.629254838526001 Functional Loss - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15640544 chr19:15640547 nonsynonymous SNV 0.823 1 24 hm5C_associated_SNPs_52633 0 0 0 0 1 CYP4F22 chr19:15640520 3'AG 15640520 Downstream 28bp
chrX 35938165 35938165 1 + G T SKCM 35938163 + 35938143 35938183 41 TTAAGGAGCCCGTCAAGCCACAGGTGACACACTAAGGGGTG TTAAGGAGCCCGTCAAGCCACATGTGACACACTAAGGGGTG < 41bp 0.814606373132665 0.492216169397711 0.68077844 0.25762722 prediction 0.62921274626533 Functional Loss - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35938163 chrX:35938165 nonsynonymous SNV 0.510 2 23 hm5C_associated_SNPs_52634 0 0 0 1 1 CFAP47 chrX:35938165 5'GT 35938165 Upstream 1bp
chr1 1563448 1563448 1 + G T LUAD 1563445 + 1563425 1563465 41 CTCCGCCATCTCGGCGGGCACTGGAGCCAGCGGCATTGTCG CTCCGCCATCTCGGCGGGCACTGTAGCCAGCGGCATTGTCG < 41bp 0.858592858250791 0.544018471719797 0.8574554 0.6395911 prediction 0.629148773061988 Functional Loss - MIB2 ENSG00000197530 CDS Human protein_coding chr1:1563445 chr1:1563448 nonsynonymous SNV 0.014 3 24 hm5C_associated_SNPs_52639 0 0 0 0 1 MIB2 chr1:1563399 3'AG 1563399 Downstream 50bp
chr12 111330906 111330906 1 + G T UCEC 111330904 + 111330884 111330924 41 AGATCATCCTCTTGCGATCCCAGCAGAAATTGTCCCACGAT AGATCATCCTCTTGCGATCCCATCAGAAATTGTCCCACGAT < 41bp 0.814562701355924 0.495379448480698 0.5427119 0.13000906 prediction 0.629125402711847 Functional Loss - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111330904 chr12:111330906 nonsynonymous SNV 0.710 1 23 hm5C_associated_SNPs_52640 0 0 0 0 2 CCDC63 chr12:111330880 3'AG 111330880 Downstream 27bp
chr12 111330906 111330906 1 + G T UCEC 111330904 + 111330884 111330924 41 AGATCATCCTCTTGCGATCCCAGCAGAAATTGTCCCACGAT AGATCATCCTCTTGCGATCCCATCAGAAATTGTCCCACGAT < 41bp 0.814562701355924 0.495379448480698 0.5427119 0.13000906 prediction 0.629125402711847 Functional Loss - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111330904 chr12:111330906 nonsynonymous SNV 0.710 1 23 hm5C_associated_SNPs_52640 0 0 0 0 2 CCDC63 chr12:111330954 5'GT 111330954 Upstream 49bp
chr11 20625863 20625863 1 + G T LUAD 20625860 + 20625840 20625880 41 GCAAGGGGATGAGAATAAGGCCCGAGGGAACTGGTCCAGCA GCAAGGGGATGAGAATAAGGCCCTAGGGAACTGGTCCAGCA < 41bp 0.814555892431749 0.45642279900008 0.12948328 0.13958123 prediction 0.629111784863497 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20625860 chr11:20625863 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_52641 0 0 0 0 1 SLC6A5 chr11:20625832 3'AG 20625832 Downstream 32bp
chr6 151857490 151857490 1 + G T LUAD 151857487 + 151857467 151857507 41 TCTTTCGGAAGTCCCGGTCACGCGGGAGCAGTTAAACCACT TCTTTCGGAAGTCCCGGTCACGCTGGAGCAGTTAAACCACT < 41bp 0.872186021849478 0.557630858865647 0.9143678 0.84009904 prediction 0.629110325967662 Functional Loss - CCDC170 ENSG00000120262 CDS Human protein_coding chr6:151857487 chr6:151857490 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_52642 0 0 0 0 2 CCDC170 chr6:151857453 3'AG 151857453 Downstream 38bp
chr6 151857490 151857490 1 + G T LUAD 151857487 + 151857467 151857507 41 TCTTTCGGAAGTCCCGGTCACGCGGGAGCAGTTAAACCACT TCTTTCGGAAGTCCCGGTCACGCTGGAGCAGTTAAACCACT < 41bp 0.872186021849478 0.557630858865647 0.9143678 0.84009904 prediction 0.629110325967662 Functional Loss - CCDC170 ENSG00000120262 CDS Human protein_coding chr6:151857487 chr6:151857490 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_52642 0 0 0 0 2 CCDC170 chr6:151857581 5'GT 151857581 Upstream 92bp
chr6 43010858 43010858 1 + A C rs77965460 43010854 + 43010834 43010874 41 CAACAGCGCGTCAGGTTTCTCATGATGCTGCTTGGAAGGCC CAACAGCGCGTCAGGTTTCTCATGCTGCTGCTTGGAAGGCC < 41bp 0.869755204896525 0.55520945828948 0.4042259 0.4693477 prediction 0.629091493214089 Functional Loss - CUL7 ENSG00000044090 CDS Human protein_coding chr6:43010854 chr6:43010858 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_52644 0 0 0 0 1 CUL7 chr6:43010796 3'AG 43010796 Downstream 63bp
chr21 27130449 27130449 1 + G T UCEC 27130446 + 27130426 27130466 41 GAGAATTATGTAGTCTCAACCAAGAAGATTTTTTTCAGCGG GAGAATTATGTAGTCTCAACCAATAAGATTTTTTTCAGCGG < 41bp 0.814541585409999 0.462469666434129 0.81708956 0.16091925 prediction 0.629083170819999 Functional Loss - GABPA ENSG00000154727 CDS Human protein_coding chr21:27130446 chr21:27130449 stopgain 1.000 1 24 hm5C_associated_SNPs_52646 0 0 1 0 1 GABPA chr21:27130515 5'GT 27130515 Upstream 67bp
chr6 27806817 27806817 1 + G T UCEC 27806814 + 27806794 27806834 41 GTCACCAAGTACACCAGTTCCAAGTGAGCCCGCCCACCGCG GTCACCAAGTACACCAGTTCCAATTGAGCCCGCCCACCGCG < 41bp 0.857785649254205 0.543244718651767 0.77172416 0.25496593 prediction 0.629081861204874 Functional Loss - HIST1H2BN ENSG00000233822;ENSG00000233822 exonic;splicing Human protein_coding chr6:27806814 chr6:27806817 nonsynonymous SNV 0.946 0 24 hm5C_associated_SNPs_52647 0 0 1 0 1 HIST1H2BN chr6:27806843 5'GT 27806843 Upstream 27bp
chr10 13246327 13246327 1 + A C LUSC 13246323 + 13246303 13246343 41 TTCAAATGTCCCTGTGGAAACAGAAGCATCTCCTTGGACAG TTCAAATGTCCCTGTGGAAACAGACGCATCTCCTTGGACAG < 41bp 0.814540678019863 0.440136229727855 0.8694531 0.8466493 prediction 0.629081356039725 Functional Loss - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13246323 chr10:13246327 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_52648 0 0 1 0 1 MCM10 chr10:13246364 5'GT 13246364 Upstream 38bp
chr10 27456177 27456177 1 + A C UCEC 27456173 + 27456153 27456193 41 AGTGTGGAATCAGAATGCCACAGCAGTCCCAAATGGGAAAA AGTGTGGAATCAGAATGCCACAGCCGTCCCAAATGGGAAAA < 41bp 0.814518879359384 0.420496792526034 0.13584769 0.15753058 prediction 0.629037758718768 Functional Loss - MASTL ENSG00000120539 CDS Human protein_coding chr10:27456173 chr10:27456177 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_52651 0 0 1 0 1 MASTL chr10:27456203 5'GT 27456203 Upstream 27bp
chr2 39934299 39934299 1 + G T KIRP 39934296 + 39934276 39934316 41 GGGAGGAGAGCTTGACCCAGCACGTGGCTGGACTCCTGTTC GGGAGGAGAGCTTGACCCAGCACTTGGCTGGACTCCTGTTC < 41bp 0.814442722224912 0.447122783546613 0.5063096 0.33462435 prediction 0.628885444449824 Functional Loss - TMEM178A ENSG00000152154 CDS Human protein_coding chr2:39934296 chr2:39934299 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_52652 0 0 0 0 1 TMEM178A chr2:39934326 5'GT 39934326 Upstream 28bp
chr1 1387470 1387470 1 + G T COAD 1387468 + 1387448 1387488 41 GGAAGCAGGAGGAGTCCGTGCAGAAGCACCATCAGACCTTC GGAAGCAGGAGGAGTCCGTGCATAAGCACCATCAGACCTTC < 41bp 0.841016958940511 0.526580032818568 0.31682333 0.15079224 prediction 0.628873852243886 Functional Loss - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1387468 chr1:1387470 nonsynonymous SNV 0.545 3 23 hm5C_associated_SNPs_52653 0 0 0 0 2 ATAD3C chr1:1387426 3'AG 1387426 Downstream 45bp
chr1 1387470 1387470 1 + G T COAD 1387468 + 1387448 1387488 41 GGAAGCAGGAGGAGTCCGTGCAGAAGCACCATCAGACCTTC GGAAGCAGGAGGAGTCCGTGCATAAGCACCATCAGACCTTC < 41bp 0.841016958940511 0.526580032818568 0.31682333 0.15079224 prediction 0.628873852243886 Functional Loss - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1387468 chr1:1387470 nonsynonymous SNV 0.545 3 23 hm5C_associated_SNPs_52653 0 0 0 0 2 ATAD3C chr1:1387502 5'GT 1387502 Upstream 33bp
chr19 3251064 3251064 1 + G T LGG 3251061 + 3251041 3251081 41 GCACGAGCAGAAGACCTTGCCCGGAGTGAGTCCTGTGTGGT GCACGAGCAGAAGACCTTGCCCGTAGTGAGTCCTGTGTGGT < 41bp 0.814426746703 0.440710096281186 0.89261687 0.28850132 prediction 0.628853493405999 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3251061 chr19:3251064 nonsynonymous SNV 0.879 3 24 hm5C_associated_SNPs_52656 0 0 0 0 2 CELF5 chr19:3250983 3'AG 3250983 Downstream 82bp
chr19 3251064 3251064 1 + G T LGG 3251061 + 3251041 3251081 41 GCACGAGCAGAAGACCTTGCCCGGAGTGAGTCCTGTGTGGT GCACGAGCAGAAGACCTTGCCCGTAGTGAGTCCTGTGTGGT < 41bp 0.814426746703 0.440710096281186 0.89261687 0.28850132 prediction 0.628853493405999 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3251061 chr19:3251064 nonsynonymous SNV 0.879 3 24 hm5C_associated_SNPs_52656 0 0 0 0 2 CELF5 chr19:3251065 5'GT 3251065 Upstream 2bp
chr17 37898928 37898928 1 + A C ESCA 37898924 + 37898904 37898944 41 AGCCCAATTCTCGGGGGCCCCTCCAGTGCAAGGGGGCTGCT AGCCCAATTCTCGGGGGCCCCTCCCGTGCAAGGGGGCTGCT < 41bp 0.903554514154597 0.589130106424933 0.9634427 0.916832 prediction 0.628848815459327 Functional Loss - GRB7 ENSG00000141738 CDS Human protein_coding chr17:37898924 chr17:37898928 nonsynonymous SNV 0.207 0 25 hm5C_associated_SNPs_52657 0 0 1 0 1 GRB7 chr17:37898969 5'GT 37898969 Upstream 42bp
chr18 2890629 2890629 1 + G T COAD 2890626 + 2890606 2890646 41 ACTGGTACAGCACAACCAAGCTGGGGGGTAGATCCAAAAGA ACTGGTACAGCACAACCAAGCTGTGGGGTAGATCCAAAAGA < 41bp 0.814404699373278 0.441912510679134 0.4772885 0.21563807 prediction 0.628809398746556 Functional Loss - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2890626 chr18:2890629 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_52659 0 0 0 0 1 EMILIN2 chr18:2890559 3'AG 2890559 Downstream 71bp
chr1 156902292 156902292 1 + G T ACC 156902289 + 156902269 156902309 41 CAGATGCAGTTCTCCAAGGCCAAGAGTGCATCCAAGGGTCC CAGATGCAGTTCTCCAAGGCCAATAGTGCATCCAAGGGTCC < 41bp 0.814388067455624 0.443450847704651 0.8127354 0.33898014 prediction 0.628776134911247 Functional Loss - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156902289 chr1:156902292 nonsynonymous SNV 0.847 3 24 hm5C_associated_SNPs_52661 0 0 0 0 2 LRRC71 chr1:156902216 3'AG 156902216 Downstream 77bp
chr1 156902292 156902292 1 + G T ACC 156902289 + 156902269 156902309 41 CAGATGCAGTTCTCCAAGGCCAAGAGTGCATCCAAGGGTCC CAGATGCAGTTCTCCAAGGCCAATAGTGCATCCAAGGGTCC < 41bp 0.814388067455624 0.443450847704651 0.8127354 0.33898014 prediction 0.628776134911247 Functional Loss - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156902289 chr1:156902292 nonsynonymous SNV 0.847 3 24 hm5C_associated_SNPs_52661 0 0 0 0 2 LRRC71 chr1:156902337 5'GT 156902337 Upstream 46bp
chr6 88769255 88769255 1 + G T BRCA 88769252 + 88769232 88769272 41 TGGCTTTCGAGTGTGACACACTGGATAATAATGAAATAGTA TGGCTTTCGAGTGTGACACACTGTATAATAATGAAATAGTA < 41bp 0.814387345062474 0.465296810907097 0.3078016 0.17797086 prediction 0.628774690124948 Functional Loss - SPACA1 ENSG00000118434 CDS Human protein_coding chr6:88769252 chr6:88769255 nonsynonymous SNV 0.701 3 24 hm5C_associated_SNPs_52662 0 0 0 0 2 SPACA1 chr6:88769171 3'AG 88769171 Downstream 85bp
chr6 88769255 88769255 1 + G T BRCA 88769252 + 88769232 88769272 41 TGGCTTTCGAGTGTGACACACTGGATAATAATGAAATAGTA TGGCTTTCGAGTGTGACACACTGTATAATAATGAAATAGTA < 41bp 0.814387345062474 0.465296810907097 0.3078016 0.17797086 prediction 0.628774690124948 Functional Loss - SPACA1 ENSG00000118434 CDS Human protein_coding chr6:88769252 chr6:88769255 nonsynonymous SNV 0.701 3 24 hm5C_associated_SNPs_52662 0 0 0 0 2 SPACA1 chr6:88769306 5'GT 88769306 Upstream 52bp
chr1 44684765 44684765 1 + A C UCEC 44684761 + 44684741 44684781 41 AGTACCTGCTACAGGAGCTGCGCAAGATTGAGGCCCGGAAG AGTACCTGCTACAGGAGCTGCGCACGATTGAGGCCCGGAAG < 41bp 0.81438553671226 0.41973964532693 0.8523513 0.3699875 prediction 0.62877107342452 Functional Loss - DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44684761 chr1:44684765 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_52663 0 0 1 0 1 DMAP1 chr1:44684728 3'AG 44684728 Downstream 38bp
chr2 27560188 27560188 1 + G T UCEC 27560185 + 27560165 27560205 41 AACAATGGAGACTTCTCCTCCTGGGGCAGGTAGGGAGCGGC AACAATGGAGACTTCTCCTCCTGTGGCAGGTAGGGAGCGGC < 41bp 0.871950033755594 0.557580362751877 0.62636447 0.35772365 prediction 0.628739342007435 Functional Loss - GTF3C2 ENSG00000115207 CDS Human protein_coding chr2:27560185 chr2:27560188 synonymous SNV . 0 24 hm5C_associated_SNPs_52665 0 0 0 0 1 GTF3C2 chr2:27560193 5'GT 27560193 Upstream 6bp
chr12 112587634 112587634 1 + A C SKCM 112587630 + 112587610 112587650 41 CTAGACTGGATTCCCAGCCTCAAGAGACCTCACCAGAGCTG CTAGACTGGATTCCCAGCCTCAAGCGACCTCACCAGAGCTG < 41bp 0.814358865214649 0.425350893203004 0.39021218 0.20646909 prediction 0.628717730429298 Functional Loss - TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112587630 chr12:112587634 nonsynonymous SNV 0.322 0 25 hm5C_associated_SNPs_52667 0 0 1 0 1 TRAFD1 chr12:112587555 3'AG 112587555 Downstream 80bp
chrX 134989171 134989171 1 + G T UCEC 134989169 + 134989149 134989189 41 CATCTTGTCAACTGCTTCAACAGGGCTTATTAATGTGGCAG CATCTTGTCAACTGCTTCAACATGGCTTATTAATGTGGCAG < 41bp 0.814340119789455 0.492278768486806 0.7715103 0.14584231 prediction 0.62868023957891 Functional Loss - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134989169 chrX:134989171 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_52668 0 0 1 0 2 SAGE1 chrX:134989085 3'AG 134989085 Downstream 87bp
chrX 134989171 134989171 1 + G T UCEC 134989169 + 134989149 134989189 41 CATCTTGTCAACTGCTTCAACAGGGCTTATTAATGTGGCAG CATCTTGTCAACTGCTTCAACATGGCTTATTAATGTGGCAG < 41bp 0.814340119789455 0.492278768486806 0.7715103 0.14584231 prediction 0.62868023957891 Functional Loss - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134989169 chrX:134989171 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_52668 0 0 1 0 2 SAGE1 chrX:134989225 5'GT 134989225 Upstream 55bp
chr3 107646807 107646807 1 + G T rs9837335 107646804 + 107646784 107646824 41 CACTGCAGCCTCGCGGGCTGCCCGGGACTTCATCAAGCCCG CACTGCAGCCTCGCGGGCTGCCCTGGACTTCATCAAGCCCG < 41bp 0.814332393864475 0.463758722862891 0.6850873 0.25911945 prediction 0.628664787728951 Functional Loss - LINC00636 ENSG00000240423 ncRNA_exonic Human lincRNA chr3:107646804 chr3:107646807 . . 0 24 hm5C_associated_SNPs_52671 0 0 0 0 1 LINC00636 chr3:107646720 3'AG 107646720 Downstream 88bp
chr9 100823218 100823218 1 + G T PRAD 100823216 + 100823196 100823236 41 GAGTTCAGCCATGACCAGTACAGGGAGCTGCAGAGGTACGC GAGTTCAGCCATGACCAGTACATGGAGCTGCAGAGGTACGC < 41bp 0.819006722466756 0.504675632731997 0.5127233 0.28274095 prediction 0.628662179469517 Functional Loss - NANS ENSG00000095380 CDS Human protein_coding chr9:100823216 chr9:100823218 nonsynonymous SNV 0.993 1 23 hm5C_associated_SNPs_52672 0 0 1 0 1 NANS chr9:100823279 5'GT 100823279 Upstream 62bp
chr12 56524691 56524691 1 + A C LUSC 56524687 + 56524667 56524707 41 TCTGCAAACATTTACATTTACACGAGTGGAACTGGGTGAAA TCTGCAAACATTTACATTTACACGCGTGGAACTGGGTGAAA < 41bp 0.894913029960882 0.580594273759751 0.07281196 0.060825557 prediction 0.628637512402262 Functional Loss - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56524687 chr12:56524691 synonymous SNV . 0 25 hm5C_associated_SNPs_52674 0 0 1 0 1 ESYT1 chr12:56524709 5'GT 56524709 Upstream 19bp
chr19 52089964 52089964 1 + G T UCEC 52089961 + 52089941 52089981 41 GGATATGGTAGGTGAGTTCACAAGAGATGGTTCATGGTGTT GGATATGGTAGGTGAGTTCACAATAGATGGTTCATGGTGTT < 41bp 0.856580034719818 0.542291962216116 0.7281773 0.1909517 prediction 0.628576145007404 Functional Loss - ZNF175 ENSG00000105497 CDS Human protein_coding chr19:52089961 chr19:52089964 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_52678 0 0 0 0 1 ZNF175 chr19:52089880 3'AG 52089880 Downstream 85bp
chr10 99338039 99338039 1 + G T UCEC 99338036 + 99338016 99338056 41 AGACGTCCCTGGACCTGCGGCGGGAGATCATCGATGTGGGC AGACGTCCCTGGACCTGCGGCGGTAGATCATCGATGTGGGC < 41bp 0.883744158889245 0.569495521684818 0.5316343 0.2526248 prediction 0.628497274408853 Functional Loss - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99338036 chr10:99338039 stopgain 0.986 1 24 hm5C_associated_SNPs_52681 0 0 0 0 1 ANKRD2 chr10:99337997 3'AG 99337997 Downstream 43bp
chr20 61299221 61299221 1 + G T CESC 61299219 + 61299199 61299239 41 GTACTTCTCACTGTGCCACGCAGGGTGCCCTGCAGCCACGG GTACTTCTCACTGTGCCACGCATGGTGCCCTGCAGCCACGG < 41bp 0.847315205311771 0.533067641968297 0.9101097 0.546247 prediction 0.628495126686948 Functional Loss - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61299219 chr20:61299221 nonsynonymous SNV 0.004 4 23 hm5C_associated_SNPs_52682 0 0 1 0 1 SLCO4A1 chr20:61299262 5'GT 61299262 Upstream 42bp
chr20 3729932 3729932 1 + G T LUAD 3729930 + 3729910 3729950 41 CCGCACGTTCCTGGTGGAGTCAGGCGTAGGAGAGCTGTGGG CCGCACGTTCCTGGTGGAGTCATGCGTAGGAGAGCTGTGGG < 41bp 0.814247288712559 0.477050235463846 0.8881837 0.4345594 prediction 0.628494577425118 Functional Loss - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3729930 chr20:3729932 nonsynonymous SNV 0.868 3 23 hm5C_associated_SNPs_52683 0 0 0 0 2 HSPA12B chr20:3729879 3'AG 3729879 Downstream 54bp
chr20 3729932 3729932 1 + G T LUAD 3729930 + 3729910 3729950 41 CCGCACGTTCCTGGTGGAGTCAGGCGTAGGAGAGCTGTGGG CCGCACGTTCCTGGTGGAGTCATGCGTAGGAGAGCTGTGGG < 41bp 0.814247288712559 0.477050235463846 0.8881837 0.4345594 prediction 0.628494577425118 Functional Loss - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3729930 chr20:3729932 nonsynonymous SNV 0.868 3 23 hm5C_associated_SNPs_52683 0 0 0 0 2 HSPA12B chr20:3729965 5'GT 3729965 Upstream 34bp
chr20 2597739 2597739 1 + A T LUSC 2597735 + 2597715 2597755 41 CAGGATGGGCTCCTTCTATGCTCCAGGCCTGGTGGGCATTA CAGGATGGGCTCCTTCTATGCTCCTGGCCTGGTGGGCATTA < 41bp 0.814608267913471 0.500363588088504 0.85285103 0.19740039 prediction 0.628489359649934 Functional Loss - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2597735 chr20:2597739 synonymous SNV . 0 25 hm5C_associated_SNPs_52684 0 0 0 0 1 TMC2 chr20:2597718 3'AG 2597718 Downstream 22bp
chr14 31346934 31346934 1 + G T COAD 31346932 + 31346912 31346952 41 ATATGTGGGGCTGCTGTCCACAGGTAAGCCCAAACACACCA ATATGTGGGGCTGCTGTCCACATGTAAGCCCAAACACACCA < 41bp 0.814226924330023 0.489810960583097 0.8404379 0.24147356 prediction 0.628453848660045 Functional Loss - COCH ENSG00000100473 CDS Human protein_coding chr14:31346932 chr14:31346934 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_52685 0 0 1 0 1 COCH chr14:31346934 5'GT 31346934 Upstream 1bp
chr4 39439400 39439400 1 + G T LUAD 39439397 + 39439377 39439417 41 GTTATACTGCCTGGTCTCTCCTGGATGGCTTTGAATGGCAG GTTATACTGCCTGGTCTCTCCTGTATGGCTTTGAATGGCAG < 41bp 0.814224041308101 0.45489055562139 0.4268809 0.13727364 prediction 0.628448082616202 Functional Loss - KLB ENSG00000134962 CDS Human protein_coding chr4:39439397 chr4:39439400 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52686 0 0 1 0 1 KLB chr4:39439347 3'AG 39439347 Downstream 54bp
chr19 42265212 42265212 1 + G T SKCM 42265209 + 42265189 42265229 41 AACTCCAACCCCGTGGAGGACAAGGATGCTGTGGCCTTCAC AACTCCAACCCCGTGGAGGACAATGATGCTGTGGCCTTCAC < 41bp 0.814216462468893 0.438156425615374 0.3770492 0.28785113 prediction 0.628432924937786 Functional Loss - CEACAM6 ENSG00000086548 CDS Human other chr19:42265209 chr19:42265212 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_52688 0 0 0 0 1 CEACAM6 chr19:42265157 3'AG 42265157 Downstream 56bp
chr16 15490051 15490051 1 + G T UCEC 15490048 + 15490028 15490068 41 GTCGGTGCGCCCATCGCGGTCTCGGCCTTCTATGTCGGTGA GTCGGTGCGCCCATCGCGGTCTCTGCCTTCTATGTCGGTGA < 41bp 0.814201875774379 0.443767094493007 0.15961328 0.0893307 prediction 0.628403751548757 Functional Loss - MPV17L ENSG00000156968;ENSG00000261130 CDS Human other chr16:15490048 chr16:15490051 synonymous SNV . 0 24 hm5C_associated_SNPs_52689 0 0 1 0 1 MPV17L chr16:15490064 5'GT 15490064 Upstream 14bp
chr2 74056105 74056105 1 + G T rs77194291 74056102 + 74056082 74056122 41 TGTGACGTTTCCGGAACCTCCGGGTGTCATCCGCGGGGAAA TGTGACGTTTCCGGAACCTCCGGTTGTCATCCGCGGGGAAA < 41bp 0.854831461459313 0.540642514370713 0.919283 0.84584177 prediction 0.628377894177199 Functional Loss - STAMBP ENSG00000124356 UTR5 Human protein_coding chr2:74056102 chr2:74056105 . . 0 24 hm5C_associated_SNPs_52691 0 0 1 0 2 STAMBP chr2:74056123 5'GT 74056123 Upstream 19bp
chr2 74056105 74056105 1 + G T rs77194291 74056102 + 74056082 74056122 41 TGTGACGTTTCCGGAACCTCCGGGTGTCATCCGCGGGGAAA TGTGACGTTTCCGGAACCTCCGGTTGTCATCCGCGGGGAAA < 41bp 0.854831461459313 0.540642514370713 0.919283 0.84584177 prediction 0.628377894177199 Functional Loss - STAMBP ENSG00000124356 UTR5 Human protein_coding chr2:74056102 chr2:74056105 . . 0 24 hm5C_associated_SNPs_52691 0 0 1 0 2 STAMBP chr2:74056197 5'GT 74056197 Upstream 93bp
chr19 46205121 46205121 1 + G T THYM 46205119 + 46205099 46205139 41 GGAAGTGATGTACTTCCAACCCGGGGAGCCCTTTGGCTCTG GGAAGTGATGTACTTCCAACCCTGGGAGCCCTTTGGCTCTG < 41bp 0.832689780346069 0.518507214240204 0.93156 0.2239829 prediction 0.62836513221173 Functional Loss - QPCTL ENSG00000011478 CDS Human protein_coding chr19:46205119 chr19:46205121 nonsynonymous SNV 0.904 3 23 hm5C_associated_SNPs_52692 0 0 1 0 2 QPCTL chr19:46205056 3'AG 46205056 Downstream 66bp
chr19 46205121 46205121 1 + G T THYM 46205119 + 46205099 46205139 41 GGAAGTGATGTACTTCCAACCCGGGGAGCCCTTTGGCTCTG GGAAGTGATGTACTTCCAACCCTGGGAGCCCTTTGGCTCTG < 41bp 0.832689780346069 0.518507214240204 0.93156 0.2239829 prediction 0.62836513221173 Functional Loss - QPCTL ENSG00000011478 CDS Human protein_coding chr19:46205119 chr19:46205121 nonsynonymous SNV 0.904 3 23 hm5C_associated_SNPs_52692 0 0 1 0 2 QPCTL chr19:46205172 5'GT 46205172 Upstream 52bp
chr15 68126112 68126112 1 + A C LIHC 68126108 + 68126088 68126128 41 GACGCCCTGCACCATTTCTCCTGCAAGATGCTGACGCCCCG GACGCCCTGCACCATTTCTCCTGCCAGATGCTGACGCCCCG < 41bp 0.81416722627041 0.430654270637433 0.40110436 0.23908043 prediction 0.628334452540821 Functional Loss - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68126108 chr15:68126112 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_52694 0 0 0 0 1 SKOR1 chr15:68126080 3'AG 68126080 Downstream 33bp
chr17 56327796 56327796 1 + G T BLCA 56327793 + 56327773 56327813 41 TAGGCCCGGGAGGTATCTAACAAGATTGTTGGCTATCTGAA TAGGCCCGGGAGGTATCTAACAATATTGTTGGCTATCTGAA < 41bp 0.814164761209484 0.448210217868853 0.93017924 0.80440557 prediction 0.628329522418969 Functional Loss - LPO ENSG00000167419 CDS Human protein_coding chr17:56327793 chr17:56327796 nonsynonymous SNV 0.882 0 24 hm5C_associated_SNPs_52695 0 0 0 0 2 LPO chr17:56327776 3'AG 56327776 Downstream 21bp
chr17 56327796 56327796 1 + G T BLCA 56327793 + 56327773 56327813 41 TAGGCCCGGGAGGTATCTAACAAGATTGTTGGCTATCTGAA TAGGCCCGGGAGGTATCTAACAATATTGTTGGCTATCTGAA < 41bp 0.814164761209484 0.448210217868853 0.93017924 0.80440557 prediction 0.628329522418969 Functional Loss - LPO ENSG00000167419 CDS Human protein_coding chr17:56327793 chr17:56327796 nonsynonymous SNV 0.882 0 24 hm5C_associated_SNPs_52695 0 0 0 0 2 LPO chr17:56327840 5'GT 56327840 Upstream 45bp
chr6 25972186 25972186 1 + G T LUSC 25972183 + 25972163 25972203 41 GAGGAAGAGAAGTCTTATCTCTGGAGGCTGGAGAAAGAAGA GAGGAAGAGAAGTCTTATCTCTGTAGGCTGGAGAAAGAAGA < 41bp 0.820728284164797 0.506564629281264 0.063981354 0.042170435 prediction 0.628327309767068 Functional Loss - TRIM38 ENSG00000112343 CDS Human protein_coding chr6:25972183 chr6:25972186 nonsynonymous SNV 0.481 4 24 hm5C_associated_SNPs_52696 0 0 1 0 1 TRIM38 chr6:25972097 3'AG 25972097 Downstream 90bp
chr17 72470012 72470012 1 + G T LUAD 72470010 + 72469990 72470030 41 AGGTTGAGGTGTCCGTGTTCCCGGGTGAGCCCCTCCTTCCC AGGTTGAGGTGTCCGTGTTCCCTGGTGAGCCCCTCCTTCCC < 41bp 0.814122255942177 0.49426748344652 0.9328688 0.5060332 prediction 0.628244511884354 Functional Loss - CD300A ENSG00000167851 CDS Human protein_coding chr17:72470010 chr17:72470012 synonymous SNV . 0 23 hm5C_associated_SNPs_52698 0 0 0 0 1 CD300A chr17:72470013 5'GT 72470013 Upstream 2bp
chr4 187197050 187197050 1 + G T PRAD 187197047 + 187197027 187197067 41 AATCCTGTGCACTTTCTAATCTGGGTAATTATCGACTTCTT AATCCTGTGCACTTTCTAATCTGTGTAATTATCGACTTCTT < 41bp 0.814106727744424 0.464457456052677 0.33668458 0.047601104 prediction 0.628213455488848 Functional Loss - F11 ENSG00000088926 CDS Human protein_coding chr4:187197047 chr4:187197050 nonsynonymous SNV 0.827 3 24 hm5C_associated_SNPs_52699 0 0 1 0 1 F11 chr4:187197050 5'GT 187197050 Upstream 1bp
chr4 72897911 72897911 1 + G T LUAD 72897909 + 72897889 72897929 41 CCTGCCGCCGACAGGGCTCGCCGGGAGAGGTAACAGCATGG CCTGCCGCCGACAGGGCTCGCCTGGAGAGGTAACAGCATGG < 41bp 0.828133356949424 0.514033022700541 0.8435678 0.31163678 prediction 0.628200668497767 Functional Loss - NPFFR2 ENSG00000056291 CDS Human protein_coding chr4:72897909 chr4:72897911 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_52700 0 0 0 0 1 NPFFR2 chr4:72897917 5'GT 72897917 Upstream 7bp
chr18 74963096 74963096 1 + A C COAD 74963092 + 74963072 74963112 41 CAGTGGCCCGACCCTCGCCACAAGAAGGCCTACGTGGTGTG CAGTGGCCCGACCCTCGCCACAAGCAGGCCTACGTGGTGTG < 41bp 0.814076383053551 0.440866812856759 0.13189837 0.01555416 prediction 0.628152766107103 Functional Loss - GALR1 ENSG00000166573 CDS Human protein_coding chr18:74963092 chr18:74963096 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_52702 0 0 0 0 1 GALR1 chr18:74963170 5'GT 74963170 Upstream 75bp
chr18 74963095 74963095 1 + G T COAD 74963092 + 74963072 74963112 41 CAGTGGCCCGACCCTCGCCACAAGAAGGCCTACGTGGTGTG CAGTGGCCCGACCCTCGCCACAATAAGGCCTACGTGGTGTG < 41bp 0.814076383053551 0.450355510217515 0.13189837 0.03368935 prediction 0.628152766107103 Functional Loss - GALR1 ENSG00000166573 CDS Human protein_coding chr18:74963092 chr18:74963095 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_52703 0 0 0 0 1 GALR1 chr18:74963170 5'GT 74963170 Upstream 76bp
chr7 98951688 98951688 1 + G T BLCA 98951686 + 98951666 98951706 41 TCTCTGCCAGTGGGAGCCGCCTGGCCTGGGTCAGCCACGAC TCTCTGCCAGTGGGAGCCGCCTTGCCTGGGTCAGCCACGAC < 41bp 0.814063934119909 0.496733138843998 0.24483216 0.11671314 prediction 0.628127868239818 Functional Loss - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98951686 chr7:98951688 synonymous SNV . 0 23 hm5C_associated_SNPs_52704 0 0 1 0 1 ARPC1A chr7:98951744 5'GT 98951744 Upstream 57bp
chr12 7475049 7475049 1 + G T SKCM 7475046 + 7475026 7475066 41 GAGTCTGCGGCACTGCTTGACCGGAGGGGAGCCACTCAACC GAGTCTGCGGCACTGCTTGACCGTAGGGGAGCCACTCAACC < 41bp 0.814061681893573 0.432096388694784 0.7928904 0.14110258 prediction 0.628123363787146 Functional Loss - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7475046 chr12:7475049 nonsynonymous SNV 0.937 3 24 hm5C_associated_SNPs_52705 0 0 0 0 2 ACSM4 chr12:7475014 3'AG 7475014 Downstream 36bp
chr12 7475049 7475049 1 + G T SKCM 7475046 + 7475026 7475066 41 GAGTCTGCGGCACTGCTTGACCGGAGGGGAGCCACTCAACC GAGTCTGCGGCACTGCTTGACCGTAGGGGAGCCACTCAACC < 41bp 0.814061681893573 0.432096388694784 0.7928904 0.14110258 prediction 0.628123363787146 Functional Loss - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7475046 chr12:7475049 nonsynonymous SNV 0.937 3 24 hm5C_associated_SNPs_52705 0 0 0 0 2 ACSM4 chr12:7475137 5'GT 7475137 Upstream 89bp
chr15 65235752 65235752 1 + G T LUSC 65235750 + 65235730 65235770 41 AGCAGATATGCTCCTCATTGCTGGGGTTGACTTAAACCTGA AGCAGATATGCTCCTCATTGCTTGGGTTGACTTAAACCTGA < 41bp 0.814015420206364 0.499168737653545 0.8292123 0.4760731 prediction 0.628030840412728 Functional Loss - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65235750 chr15:65235752 nonsynonymous SNV 0.405 4 23 hm5C_associated_SNPs_52711 0 0 0 0 2 ANKDD1A chr15:65235680 3'AG 65235680 Downstream 73bp
chr15 65235752 65235752 1 + G T LUSC 65235750 + 65235730 65235770 41 AGCAGATATGCTCCTCATTGCTGGGGTTGACTTAAACCTGA AGCAGATATGCTCCTCATTGCTTGGGTTGACTTAAACCTGA < 41bp 0.814015420206364 0.499168737653545 0.8292123 0.4760731 prediction 0.628030840412728 Functional Loss - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65235750 chr15:65235752 nonsynonymous SNV 0.405 4 23 hm5C_associated_SNPs_52711 0 0 0 0 2 ANKDD1A chr15:65235778 5'GT 65235778 Upstream 27bp
chr19 42353013 42353013 1 + G T UCEC 42353010 + 42352990 42353030 41 TGGTGTGCCGCCTGCTGTACCAAGAACCTGCTGTCTCTCTG TGGTGTGCCGCCTGCTGTACCAATAACCTGCTGTCTCTCTG < 41bp 0.881038204929855 0.567025563667301 0.53226644 0.23314917 prediction 0.628025282525108 Functional Loss - DMRTC2 ENSG00000142025 CDS Human protein_coding chr19:42353010 chr19:42353013 stopgain 0.999 0 24 hm5C_associated_SNPs_52712 0 0 0 0 1 DMRTC2 chr19:42353043 5'GT 42353043 Upstream 31bp
chr16 55360448 55360448 1 + G T LUAD 55360446 + 55360426 55360466 41 ATGCGGCCGCTGCAGCTGCCCAGAGCTACCCTGGCTACCTG ATGCGGCCGCTGCAGCTGCCCATAGCTACCCTGGCTACCTG < 41bp 0.846176965726109 0.532178180712692 0.8587643 0.278342 prediction 0.627997570026834 Functional Loss - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55360446 chr16:55360448 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_52713 0 0 0 2 1 IRX6 chr16:55360505 5'GT 55360505 Upstream 58bp
chr12 58176927 58176927 1 + G T UCEC 58176924 + 58176904 58176944 41 TCTGCGTCAGTCGCCCCAGCCAAGGCACACATTTTATGCTG TCTGCGTCAGTCGCCCCAGCCAATGCACACATTTTATGCTG < 41bp 0.859952196500561 0.545992205703633 0.3353048 0.15070206 prediction 0.627919981593855 Functional Loss - TSFM ENSG00000123297;ENSG00000257921 CDS Human other chr12:58176924 chr12:58176927 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_52716 0 0 1 0 1 TSFM chr12:58176893 3'AG 58176893 Downstream 35bp
chr3 142467270 142467270 1 + A C rs116718261 142467266 + 142467246 142467286 41 CTGTGAATGCACATTGTGTTCTGCAAAAAACAAAAAGGATA CTGTGAATGCACATTGTGTTCTGCCAAAAACAAAAAGGATA < 41bp 0.813953904507548 0.413672582014574 0.15564138 0.09628147 prediction 0.627907809015095 Functional Loss - TRPC1 ENSG00000144935 CDS Human protein_coding chr3:142467266 chr3:142467270 synonymous SNV . 0 25 hm5C_associated_SNPs_52717 0 0 0 0 1 TRPC1 chr3:142467302 5'GT 142467302 Upstream 33bp
chr2 27292983 27292983 1 + G T COAD 27292980 + 27292960 27293000 41 GCTGCCTCAGGCCAGGCCCCCACGGCCCCGCTCTGCCCCTG GCTGCCTCAGGCCAGGCCCCCACTGCCCCGCTCTGCCCCTG < 41bp 0.813951719798965 0.441506163660298 0.18986028 0.024306 prediction 0.627903439597929 Functional Loss - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27292980 chr2:27292983 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52718 0 0 0 0 1 AGBL5 chr2:27292960 3'AG 27292960 Downstream 24bp
chr3 121976184 121976184 1 + G T UCEC 121976182 + 121976162 121976202 41 TGTGGTGGGAGCAACTGGCTCAGGCGTCTCCACGGCAGTGG TGTGGTGGGAGCAACTGGCTCATGCGTCTCCACGGCAGTGG < 41bp 0.813930617764021 0.481198103687255 0.9377091 0.1931608 prediction 0.627861235528042 Functional Loss - CASR ENSG00000036828 CDS Human protein_coding chr3:121976182 chr3:121976184 nonsynonymous SNV 0.936 4 23 hm5C_associated_SNPs_52720 0 0 0 0 1 CASR chr3:121976234 5'GT 121976234 Upstream 51bp
chrX 155232672 155232672 1 + G T READ 155232670 + 155232650 155232690 41 CTGCTTGGGAGTCTCTGTCACAGGGGAAGGACAAGGTGAGG CTGCTTGGGAGTCTCTGTCACATGGGAAGGACAAGGTGAGG < 41bp 0.83481112821731 0.520892341875487 0.91420674 0.8161118 prediction 0.627837572683646 Functional Loss - IL9R ENSG00000124334 CDS Human protein_coding chrX:155232670 chrX:155232672 nonsynonymous SNV 0.006 3 23 hm5C_associated_SNPs_52721 0 0 0 0 1 IL9R chrX:155232684 5'GT 155232684 Upstream 13bp
chr19 4496311 4496311 1 + G T SARC 4496309 + 4496289 4496329 41 ACTGCTATAGGCCAAGAAATCAGCGAAGAAGCCGCAGTCCT ACTGCTATAGGCCAAGAAATCATCGAAGAAGCCGCAGTCCT < 41bp 0.813897867842512 0.489128813350986 0.8761658 0.6865657 prediction 0.627795735685024 Functional Loss - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4496309 chr19:4496311 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_52724 0 0 1 0 2 HDGFL2 chr19:4496299 3'AG 4496299 Downstream 13bp
chr19 4496311 4496311 1 + G T SARC 4496309 + 4496289 4496329 41 ACTGCTATAGGCCAAGAAATCAGCGAAGAAGCCGCAGTCCT ACTGCTATAGGCCAAGAAATCATCGAAGAAGCCGCAGTCCT < 41bp 0.813897867842512 0.489128813350986 0.8761658 0.6865657 prediction 0.627795735685024 Functional Loss - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4496309 chr19:4496311 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_52724 0 0 1 0 2 HDGFL2 chr19:4496402 5'GT 4496402 Upstream 92bp
chr19 3381733 3381733 1 + G T LUAD 3381730 + 3381710 3381750 41 GATGAGTTCCACCCGTTCATCGAGGCCCTGCTGCCTCACGT GATGAGTTCCACCCGTTCATCGATGCCCTGCTGCCTCACGT < 41bp 0.813894792372689 0.439509035413392 0.9242172 0.38747156 prediction 0.627789584745378 Functional Loss - NFIC ENSG00000141905 CDS Human protein_coding chr19:3381730 chr19:3381733 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_52726 0 0 1 0 1 NFIC chr19:3381710 3'AG 3381710 Downstream 24bp
chr4 152567855 152567855 1 + G T UCEC 152567852 + 152567832 152567872 41 TCACTCTGACGCTGGGGAACCAAGAGAGGGATTATATTCTC TCACTCTGACGCTGGGGAACCAATAGAGGGATTATATTCTC < 41bp 0.857585098622219 0.543745602138763 0.33716398 0.15061617 prediction 0.627678992966912 Functional Loss - FAM160A1 ENSG00000164142 CDS Human protein_coding chr4:152567852 chr4:152567855 stopgain 0.996 0 24 hm5C_associated_SNPs_52728 0 0 0 0 1 FAM160A1 chr4:152567900 5'GT 152567900 Upstream 46bp
chr6 143792193 143792193 1 + G T STAD 143792190 + 143792170 143792210 41 TAATTGGTGGATATATTTACCTGGATAATGCAGCAGTTGGC TAATTGGTGGATATATTTACCTGTATAATGCAGCAGTTGGC < 41bp 0.849115427397624 0.535276383379635 0.24592808 0.15201184 prediction 0.627678088035978 Functional Loss - PEX3 ENSG00000034693 CDS Human protein_coding chr6:143792190 chr6:143792193 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52729 0 0 1 0 2 PEX3 chr6:143792098 3'AG 143792098 Downstream 96bp
chr6 143792193 143792193 1 + G T STAD 143792190 + 143792170 143792210 41 TAATTGGTGGATATATTTACCTGGATAATGCAGCAGTTGGC TAATTGGTGGATATATTTACCTGTATAATGCAGCAGTTGGC < 41bp 0.849115427397624 0.535276383379635 0.24592808 0.15201184 prediction 0.627678088035978 Functional Loss - PEX3 ENSG00000034693 CDS Human protein_coding chr6:143792190 chr6:143792193 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52729 0 0 1 0 2 PEX3 chr6:143792222 5'GT 143792222 Upstream 30bp
chr12 81472130 81472130 1 + G T ESCA 81472127 + 81472107 81472147 41 GTGACCGACCCCGAGAGGTTCTGGGGCAAAGCTGCCGAGCA GTGACCGACCCCGAGAGGTTCTGTGGCAAAGCTGCCGAGCA < 41bp 0.872713802728964 0.558905382502805 0.8594282 0.28713953 prediction 0.627616840452318 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81472127 chr12:81472130 nonsynonymous SNV 0.967 4 24 hm5C_associated_SNPs_52730 0 0 1 0 2 ACSS3 chr12:81472207 5'GT 81472207 Upstream 78bp
chr12 81472130 81472130 1 + G T ESCA 81472127 + 81472107 81472147 41 GTGACCGACCCCGAGAGGTTCTGGGGCAAAGCTGCCGAGCA GTGACCGACCCCGAGAGGTTCTGTGGCAAAGCTGCCGAGCA < 41bp 0.872713802728964 0.558905382502805 0.8594282 0.28713953 prediction 0.627616840452318 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81472127 chr12:81472130 nonsynonymous SNV 0.967 4 24 hm5C_associated_SNPs_52730 0 0 1 0 2 ACSS3 chr12:81472210 5'GT 81472210 Upstream 81bp
chr7 150163798 150163798 1 + G T BLCA 150163796 + 150163776 150163816 41 GTCAGGAAAGCATGTCAGAGCAGAGCTGCCAGATGTCCGAA GTCAGGAAAGCATGTCAGAGCATAGCTGCCAGATGTCCGAA < 41bp 0.813808010152351 0.488936694759997 0.45921233 0.20645979 prediction 0.627616020304703 Functional Loss - GIMAP8 ENSG00000171115 CDS Human protein_coding chr7:150163796 chr7:150163798 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_52731 0 0 0 0 1 GIMAP8 chr7:150163759 3'AG 150163759 Downstream 40bp
chr20 30380605 30380605 1 + G T UCEC 30380603 + 30380583 30380623 41 CCAGCCTTTGCATTGAAGAACAGAATTCGAATGCCCACCAA CCAGCCTTTGCATTGAAGAACATAATTCGAATGCCCACCAA < 41bp 0.817556940670738 0.503758132644296 0.20091105 0.10734841 prediction 0.627597616052882 Functional Loss - TPX2 ENSG00000088325 CDS Human protein_coding chr20:30380603 chr20:30380605 nonsynonymous SNV 0.977 4 23 hm5C_associated_SNPs_52733 0 0 1 0 1 TPX2 chr20:30380633 5'GT 30380633 Upstream 29bp
chr11 237093 237093 1 + G T LUAD 237091 + 237071 237111 41 CTACAGCAGAGCCAGAACTCCGGGCCCGGGCAGCCCGCTGT CTACAGCAGAGCCAGAACTCCGTGCCCGGGCAGCCCGCTGT < 41bp 0.82676460421599 0.512967999852776 0.92937475 0.9074836 prediction 0.627593208726427 Functional Loss - PSMD13 ENSG00000185627 CDS Human protein_coding chr11:237091 chr11:237093 nonsynonymous SNV 0.930 1 23 hm5C_associated_SNPs_52734 0 0 1 0 1 PSMD13 chr11:237144 5'GT 237144 Upstream 52bp
chr17 18286157 18286157 1 + G T LUAD 18286154 + 18286134 18286174 41 AGGCAGGATGCCGCCACCATCCGGAGCCAATACCGAGACCT AGGCAGGATGCCGCCACCATCCGTAGCCAATACCGAGACCT < 41bp 0.878175217531405 0.564431065196943 0.9308464 0.24781942 prediction 0.627488304668925 Functional Loss - EVPLL ENSG00000214860 CDS Human protein_coding chr17:18286154 chr17:18286157 stopgain 0.195 0 24 hm5C_associated_SNPs_52735 0 0 0 0 2 EVPLL chr17:18286140 3'AG 18286140 Downstream 18bp
chr17 18286157 18286157 1 + G T LUAD 18286154 + 18286134 18286174 41 AGGCAGGATGCCGCCACCATCCGGAGCCAATACCGAGACCT AGGCAGGATGCCGCCACCATCCGTAGCCAATACCGAGACCT < 41bp 0.878175217531405 0.564431065196943 0.9308464 0.24781942 prediction 0.627488304668925 Functional Loss - EVPLL ENSG00000214860 CDS Human protein_coding chr17:18286154 chr17:18286157 stopgain 0.195 0 24 hm5C_associated_SNPs_52735 0 0 0 0 2 EVPLL chr17:18286178 5'GT 18286178 Upstream 22bp
chr1 176659488 176659488 1 + G T BLCA 176659485 + 176659465 176659505 41 CTCCCAAGAGTGAGCTGTGCCGGGAACCAGAGCCCACTAGT CTCCCAAGAGTGAGCTGTGCCGGTAACCAGAGCCCACTAGT < 41bp 0.852593804758441 0.538862927366815 0.876219 0.45676243 prediction 0.627461754783253 Functional Loss - PAPPA2 ENSG00000116183 CDS Human protein_coding chr1:176659485 chr1:176659488 stopgain 0.655 1 24 hm5C_associated_SNPs_52737 0 0 0 0 1 PAPPA2 chr1:176659566 5'GT 176659566 Upstream 79bp
chr7 149570394 149570394 1 - C A rs189248446 149570397 - 149570377 149570417 41 ACCCGGCGGGAGGCGGAGGGCTGGCGTCCTCGCGGACATCC ACCCGGCGGGAGGCGGAGGGCTGTCGTCCTCGCGGACATCC < 41bp 0.81373087014637 0.468323143294358 0.81252766 0.37241554 prediction 0.62746174029274 Functional Loss - ATP6V0E2-AS1 ENSG00000204934 ncRNA_exonic Human antisense chr7:149570397 chr7:149570394 . . 0 24 hm5C_associated_SNPs_52738 0 0 0 0 1 ATP6V0E2-AS1 chr7:149570313 5'GT 149570313 Upstream 82bp
chr2 27151173 27151173 1 + G T LUAD 27151170 + 27151150 27151190 41 ATCACAGGCCCAGAAGGAATCGAGATCAGCCGTCCAGAGGA ATCACAGGCCCAGAAGGAATCGATATCAGCCGTCCAGAGGA < 41bp 0.879800248627913 0.566090528696732 0.91473496 0.21391204 prediction 0.627419439862362 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27151170 chr2:27151173 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_52739 0 0 0 0 1 DPYSL5 chr2:27151191 5'GT 27151191 Upstream 19bp
chr1 158058193 158058193 1 + G T ACC 158058190 + 158058170 158058210 41 GATGTGACCCTTACCTGTGTCTGGGTTGGGAATCCCCCCCT GATGTGACCCTTACCTGTGTCTGTGTTGGGAATCCCCCCCT < 41bp 0.881443214304209 0.567747066070877 0.8338237 0.20602083 prediction 0.627392296466664 Functional Loss - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158058190 chr1:158058193 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52740 0 0 1 0 2 KIRREL chr1:158058117 3'AG 158058117 Downstream 77bp
chr1 158058193 158058193 1 + G T ACC 158058190 + 158058170 158058210 41 GATGTGACCCTTACCTGTGTCTGGGTTGGGAATCCCCCCCT GATGTGACCCTTACCTGTGTCTGTGTTGGGAATCCCCCCCT < 41bp 0.881443214304209 0.567747066070877 0.8338237 0.20602083 prediction 0.627392296466664 Functional Loss - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158058190 chr1:158058193 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52740 0 0 1 0 2 KIRREL chr1:158058244 5'GT 158058244 Upstream 52bp
chr2 223386551 223386551 1 + A C UCEC 223386547 + 223386527 223386567 41 GTGGCCCCGTCCCTCCTCCCCTCCAGTTGTAAAACTGGAAA GTGGCCCCGTCCCTCCTCCCCTCCCGTTGTAAAACTGGAAA < 41bp 0.813695360313787 0.394253354345627 0.91749936 0.2188915 prediction 0.627390720627574 Functional Loss - SGPP2 ENSG00000163082 CDS Human protein_coding chr2:223386547 chr2:223386551 synonymous SNV . 0 25 hm5C_associated_SNPs_52741 0 0 0 0 1 SGPP2 chr2:223386486 3'AG 223386486 Downstream 66bp
chr5 251218 251218 1 + G T LUAD 251215 + 251195 251235 41 AGCACCTGAAGACGTTCGACCGGGGTGAGCAGACAGTGGGC AGCACCTGAAGACGTTCGACCGGTGTGAGCAGACAGTGGGC < 41bp 0.813689058747629 0.4359304285879 0.9295408 0.54597205 prediction 0.627378117495258 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:251215 chr5:251218 stopgain 0.955 0 24 hm5C_associated_SNPs_52743 0 0 0 0 1 SDHA chr5:251218 5'GT 251218 Upstream 1bp
chr15 75183755 75183755 1 + G T UCEC 75183752 + 75183732 75183772 41 ACTCACCCCCGAGGGGATGCCAAGATCCTTGACAACCGCAT ACTCACCCCCGAGGGGATGCCAATATCCTTGACAACCGCAT < 41bp 0.869041309194055 0.555373860433873 0.44439736 0.24286774 prediction 0.627334897520365 Functional Loss - MPI ENSG00000178802;ENSG00000178802 exonic;splicing Human protein_coding chr15:75183752 chr15:75183755 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_52745 0 0 1 0 1 MPI chr15:75183720 3'AG 75183720 Downstream 36bp
chr8 22020107 22020107 1 + G T UCEC 22020105 + 22020085 22020125 41 AGGACTACTCCGCAGCTCCCCGGGGCCGATTTGGCATTCCC AGGACTACTCCGCAGCTCCCCGTGGCCGATTTGGCATTCCC < 41bp 0.842965701736212 0.529307711357403 0.9258009 0.5059593 prediction 0.627315980757619 Functional Loss - SFTPC ENSG00000168484 CDS Human protein_coding chr8:22020105 chr8:22020107 synonymous SNV . 0 23 hm5C_associated_SNPs_52747 0 0 0 0 1 SFTPC chr8:22020087 3'AG 22020087 Downstream 21bp
chr12 110467387 110467387 1 + G T UCEC 110467384 + 110467364 110467404 41 TCGAACGAGTGCTCATTTTGCAAGACTGAGAGATTTCATCA TCGAACGAGTGCTCATTTTGCAATACTGAGAGATTTCATCA < 41bp 0.813634466974374 0.458633146013137 0.5497055 0.3796587 prediction 0.627268933948748 Functional Loss - ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110467384 chr12:110467387 nonsynonymous SNV 0.972 4 24 hm5C_associated_SNPs_52751 0 0 1 2 1 ANKRD13A chr12:110467440 5'GT 110467440 Upstream 54bp
chr16 67063330 67063330 1 + A C STAD 67063326 + 67063306 67063346 41 GGAAGATGCCGCGCGTCGTGCCCGACCAGAGAAGCAAGTTC GGAAGATGCCGCGCGTCGTGCCCGCCCAGAGAAGCAAGTTC < 41bp 0.81362297986885 0.454899927060507 0.21336845 0.14256951 prediction 0.6272459597377 Functional Loss - CBFB ENSG00000067955 CDS Human protein_coding chr16:67063326 chr16:67063330 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_52754 0 0 1 0 1 CBFB chr16:67063388 5'GT 67063388 Upstream 59bp
chr1 158813092 158813092 1 + G T UCEC 158813089 + 158813069 158813109 41 TTGCTAAGAAAATTAAAACACAAGAAAAAGCTCCAGTGAAA TTGCTAAGAAAATTAAAACACAATAAAAAGCTCCAGTGAAA < 41bp 0.813609319609289 0.482770769551213 0.553178 0.5127779 prediction 0.627218639218578 Functional Loss - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813089 chr1:158813092 stopgain 0.001 0 24 hm5C_associated_SNPs_52755 0 0 0 0 1 MNDA chr1:158813069 3'AG 158813069 Downstream 24bp
chr17 41180096 41180096 1 + G T COAD 41180093 + 41180073 41180113 41 CATAGTGGCAAGGAGAGACTCAAGAGTTCTGCCCCAATGCC CATAGTGGCAAGGAGAGACTCAATAGTTCTGCCCCAATGCC < 41bp 0.88031969335539 0.566741874997002 0.6949622 0.2920212 prediction 0.627155636716777 Functional Loss - RND2 ENSG00000108830 CDS Human protein_coding chr17:41180093 chr17:41180096 stopgain 1.000 1 24 hm5C_associated_SNPs_52757 0 0 1 0 1 RND2 chr17:41180078 3'AG 41180078 Downstream 19bp
chr15 43690301 43690301 1 + G T LUSC 43690299 + 43690279 43690319 41 TCCCCGGGAAGCCCCTGCATCTGGCTGGGCAGCCCTAGGTC TCCCCGGGAAGCCCCTGCATCTTGCTGGGCAGCCCTAGGTC < 41bp 0.820633542851538 0.5071041896241 0.28508958 0.07668531 prediction 0.627058706454876 Functional Loss - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43690299 chr15:43690301 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_52759 0 0 1 0 3 TUBGCP4 chr15:43690236 3'AG 43690236 Downstream 66bp
chr15 43690301 43690301 1 + G T LUSC 43690299 + 43690279 43690319 41 TCCCCGGGAAGCCCCTGCATCTGGCTGGGCAGCCCTAGGTC TCCCCGGGAAGCCCCTGCATCTTGCTGGGCAGCCCTAGGTC < 41bp 0.820633542851538 0.5071041896241 0.28508958 0.07668531 prediction 0.627058706454876 Functional Loss - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43690299 chr15:43690301 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_52759 0 0 1 0 3 TUBGCP4 chr15:43690239 3'AG 43690239 Downstream 63bp
chr15 43690301 43690301 1 + G T LUSC 43690299 + 43690279 43690319 41 TCCCCGGGAAGCCCCTGCATCTGGCTGGGCAGCCCTAGGTC TCCCCGGGAAGCCCCTGCATCTTGCTGGGCAGCCCTAGGTC < 41bp 0.820633542851538 0.5071041896241 0.28508958 0.07668531 prediction 0.627058706454876 Functional Loss - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43690299 chr15:43690301 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_52759 0 0 1 0 3 TUBGCP4 chr15:43690377 5'GT 43690377 Upstream 77bp
chr10 23399200 23399200 1 + G T LUAD 23399197 + 23399177 23399217 41 AGTGGGATCTACCTGAATAACAAGGAAGCAGGAATGTATCA AGTGGGATCTACCTGAATAACAATGAAGCAGGAATGTATCA < 41bp 0.813522983021594 0.445674888362908 0.5626245 0.07886279 prediction 0.627045966043187 Functional Loss - MSRB2 ENSG00000148450 CDS Human protein_coding chr10:23399197 chr10:23399200 nonsynonymous SNV 0.800 1 24 hm5C_associated_SNPs_52760 0 0 1 0 2 MSRB2 chr10:23399171 3'AG 23399171 Downstream 30bp
chr10 23399200 23399200 1 + G T LUAD 23399197 + 23399177 23399217 41 AGTGGGATCTACCTGAATAACAAGGAAGCAGGAATGTATCA AGTGGGATCTACCTGAATAACAATGAAGCAGGAATGTATCA < 41bp 0.813522983021594 0.445674888362908 0.5626245 0.07886279 prediction 0.627045966043187 Functional Loss - MSRB2 ENSG00000148450 CDS Human protein_coding chr10:23399197 chr10:23399200 nonsynonymous SNV 0.800 1 24 hm5C_associated_SNPs_52760 0 0 1 0 2 MSRB2 chr10:23399247 5'GT 23399247 Upstream 48bp
chr16 24366171 24366171 1 + A T OV 24366167 + 24366147 24366187 41 TCCGCAGGAGCTGTGAGGGCCTCCAGTGTCTTCCCCATCCT TCCGCAGGAGCTGTGAGGGCCTCCTGTGTCTTCCCCATCCT < 41bp 0.813462270406403 0.494857186324691 0.95268005 0.19874668 prediction 0.626924540812807 Functional Loss - CACNG3 ENSG00000006116 CDS Human protein_coding chr16:24366167 chr16:24366171 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_52766 0 0 0 0 1 CACNG3 chr16:24366154 3'AG 24366154 Downstream 18bp
chr12 113871969 113871969 1 + G T UCEC 113871966 + 113871946 113871986 41 ACGAGGCCAATCTGAGGGCGCAAGAGTTGGCCAAGAGGGAC ACGAGGCCAATCTGAGGGCGCAATAGTTGGCCAAGAGGGAC < 41bp 0.876689037978929 0.56324219493692 0.8948666 0.7449511 prediction 0.626893686084019 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113871966 chr12:113871969 stopgain 0.512 0 24 hm5C_associated_SNPs_52767 0 0 1 0 2 SDSL chr12:113871939 3'AG 113871939 Downstream 31bp
chr12 113871969 113871969 1 + G T UCEC 113871966 + 113871946 113871986 41 ACGAGGCCAATCTGAGGGCGCAAGAGTTGGCCAAGAGGGAC ACGAGGCCAATCTGAGGGCGCAATAGTTGGCCAAGAGGGAC < 41bp 0.876689037978929 0.56324219493692 0.8948666 0.7449511 prediction 0.626893686084019 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113871966 chr12:113871969 stopgain 0.512 0 24 hm5C_associated_SNPs_52767 0 0 1 0 2 SDSL chr12:113872027 5'GT 113872027 Upstream 59bp
chr7 98256508 98256508 1 + G T LIHC 98256506 + 98256486 98256526 41 CTGCCCCTGTTTGTCAGTGACGGCAAGTGGCACCACATCTG CTGCCCCTGTTTGTCAGTGACGTCAAGTGGCACCACATCTG < 41bp 0.82738392324546 0.513951873524263 0.35050443 0.16462126 prediction 0.626864099442393 Functional Loss - NPTX2 ENSG00000106236 CDS Human protein_coding chr7:98256506 chr7:98256508 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_52768 0 0 1 0 1 NPTX2 chr7:98256477 3'AG 98256477 Downstream 32bp
chr5 68840857 68840857 1 + A C UCEC 68840853 + 68840833 68840873 41 AGCACCTGCAAAGGGAAGAGCAGGAAGGTCAAAGAGAACAG AGCACCTGCAAAGGGAAGAGCAGGCAGGTCAAAGAGAACAG < 41bp 0.813426216693475 0.431278102551709 0.2715878 0.2203803 prediction 0.626852433386951 Functional Loss - OCLN ENSG00000197822 CDS Human protein_coding chr5:68840853 chr5:68840857 synonymous SNV . 0 25 hm5C_associated_SNPs_52770 0 0 0 0 1 OCLN chr5:68840946 5'GT 68840946 Upstream 90bp
chr22 30823252 30823252 1 + G T SARC 30823249 + 30823229 30823269 41 TCTAGCCTCTGTGGCCATTCCGGGCTTCACCATCAACCGCG TCTAGCCTCTGTGGCCATTCCGGTCTTCACCATCAACCGCG < 41bp 0.813410100110822 0.440828063007954 0.9311988 0.8678085 prediction 0.626820200221643 Functional Loss - MTFP1 ENSG00000242114;ENSG00000249590 CDS Human other chr22:30823249 chr22:30823252 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_52773 0 0 1 0 1 MTFP1 chr22:30823158 3'AG 30823158 Downstream 95bp
chrX 47044965 47044965 1 + G T ESCA 47044963 + 47044943 47044983 41 CAGAAGCTGGCCTGTCTGCTCTGCCGACGCCAGTTCCCCAG CAGAAGCTGGCCTGTCTGCTCTTCCGACGCCAGTTCCCCAG < 41bp 0.81333844991383 0.496600295580428 0.3915467 0.22491726 prediction 0.62667689982766 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47044963 chrX:47044965 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_52776 0 0 1 0 1 RBM10 chrX:47045029 5'GT 47045029 Upstream 65bp
chr8 70515555 70515555 1 + G T LUSC 70515553 + 70515533 70515573 41 GACCCAGAAAAGCCAGGTAACAGGTGTGTCATTGTTCCTCC GACCCAGAAAAGCCAGGTAACATGTGTGTCATTGTTCCTCC < 41bp 0.813324511406957 0.493186390039745 0.9036677 0.36679256 prediction 0.626649022813914 Functional Loss - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70515553 chr8:70515555 nonsynonymous SNV 0.994 5 23 hm5C_associated_SNPs_52779 0 0 0 1 1 SULF1 chr8:70515555 5'GT 70515555 Upstream 1bp
chr17 7604788 7604788 1 + G T SARC 7604786 + 7604766 7604806 41 GTCTCTCTCAGCGTGGCCAGCAGCAGCCGGGAGAACCCGAT GTCTCTCTCAGCGTGGCCAGCATCAGCCGGGAGAACCCGAT < 41bp 0.813290419244561 0.488738262530269 0.46680474 0.07982767 prediction 0.626580838489123 Functional Loss - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7604786 chr17:7604788 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52782 0 0 0 0 3 WRAP53 chr17:7604745 3'AG 7604745 Downstream 44bp
chr17 7604788 7604788 1 + G T SARC 7604786 + 7604766 7604806 41 GTCTCTCTCAGCGTGGCCAGCAGCAGCCGGGAGAACCCGAT GTCTCTCTCAGCGTGGCCAGCATCAGCCGGGAGAACCCGAT < 41bp 0.813290419244561 0.488738262530269 0.46680474 0.07982767 prediction 0.626580838489123 Functional Loss - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7604786 chr17:7604788 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52782 0 0 0 0 3 WRAP53 chr17:7604777 3'AG 7604777 Downstream 12bp
chr17 7604788 7604788 1 + G T SARC 7604786 + 7604766 7604806 41 GTCTCTCTCAGCGTGGCCAGCAGCAGCCGGGAGAACCCGAT GTCTCTCTCAGCGTGGCCAGCATCAGCCGGGAGAACCCGAT < 41bp 0.813290419244561 0.488738262530269 0.46680474 0.07982767 prediction 0.626580838489123 Functional Loss - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7604786 chr17:7604788 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52782 0 0 0 0 3 WRAP53 chr17:7604867 5'GT 7604867 Upstream 80bp
chrX 84502625 84502625 1 + G T HNSC 84502622 + 84502602 84502642 41 TGGATTGCACACGCCAGACTCTAGAATGGCCCATACCATGA TGGATTGCACACGCCAGACTCTATAATGGCCCATACCATGA < 41bp 0.851911939518644 0.538662453259166 0.28860062 0.33330262 prediction 0.626498972518956 Functional Loss - ZNF711 ENSG00000147180 CDS Human protein_coding chrX:84502622 chrX:84502625 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_52784 0 0 1 0 2 ZNF711 chrX:84502553 3'AG 84502553 Downstream 73bp
chrX 84502625 84502625 1 + G T HNSC 84502622 + 84502602 84502642 41 TGGATTGCACACGCCAGACTCTAGAATGGCCCATACCATGA TGGATTGCACACGCCAGACTCTATAATGGCCCATACCATGA < 41bp 0.851911939518644 0.538662453259166 0.28860062 0.33330262 prediction 0.626498972518956 Functional Loss - ZNF711 ENSG00000147180 CDS Human protein_coding chrX:84502622 chrX:84502625 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_52784 0 0 1 0 2 ZNF711 chrX:84502657 5'GT 84502657 Upstream 33bp
chr16 88039714 88039714 1 + G T LUAD 88039712 + 88039692 88039732 41 TTAGCGCTGTGCCTGGGCGTCGGCAGAACACCATTGTGGTG TTAGCGCTGTGCCTGGGCGTCGTCAGAACACCATTGTGGTG < 41bp 0.8132262712546 0.493186793751024 0.87073624 0.32371962 prediction 0.6264525425092 Functional Loss - BANP ENSG00000172530 CDS Human protein_coding chr16:88039712 chr16:88039714 synonymous SNV . 0 23 hm5C_associated_SNPs_52786 0 0 1 0 1 BANP chr16:88039696 3'AG 88039696 Downstream 19bp
chr22 23501399 23501399 1 + G T STAD 23501397 + 23501377 23501417 41 GCAGACGCTGTGCACCTGGCCAGGGAGATGCAGGCCGAGTA GCAGACGCTGTGCACCTGGCCATGGAGATGCAGGCCGAGTA < 41bp 0.844106412414033 0.530883954804359 0.87726957 0.30995452 prediction 0.626444915219348 Functional Loss - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23501397 chr22:23501399 nonsynonymous SNV 0.972 0 23 hm5C_associated_SNPs_52788 0 0 0 0 2 RAB36 chr22:23501350 3'AG 23501350 Downstream 50bp
chr22 23501399 23501399 1 + G T STAD 23501397 + 23501377 23501417 41 GCAGACGCTGTGCACCTGGCCAGGGAGATGCAGGCCGAGTA GCAGACGCTGTGCACCTGGCCATGGAGATGCAGGCCGAGTA < 41bp 0.844106412414033 0.530883954804359 0.87726957 0.30995452 prediction 0.626444915219348 Functional Loss - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23501397 chr22:23501399 nonsynonymous SNV 0.972 0 23 hm5C_associated_SNPs_52788 0 0 0 0 2 RAB36 chr22:23501440 5'GT 23501440 Upstream 42bp
chr7 142962282 142962282 1 + G T UCEC 142962280 + 142962260 142962300 41 GGTCATGATCCTGCCCCCGCCCGGGGGATCTACTGTCCTCC GGTCATGATCCTGCCCCCGCCCTGGGGATCTACTGTCCTCC < 41bp 0.813197717542602 0.485329002382332 0.9404298 0.13355106 prediction 0.626395435085205 Functional Loss - GSTK1 ENSG00000197448 CDS Human protein_coding chr7:142962280 chr7:142962282 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_52790 0 0 1 0 1 GSTK1 chr7:142962185 3'AG 142962185 Downstream 98bp
chr20 30605623 30605623 1 + G T UCEC 30605620 + 30605600 30605640 41 CAGTTCCTGGGCCACCTTACCTGGGTGACTTCCTCACTGAA CAGTTCCTGGGCCACCTTACCTGTGTGACTTCCTCACTGAA < 41bp 0.813178295319542 0.42767169952434 0.9469935 0.3575557 prediction 0.626356590639084 Functional Loss - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30605620 chr20:30605623 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52794 0 0 0 0 1 CCM2L chr20:30605603 3'AG 30605603 Downstream 21bp
chr17 48539874 48539874 1 + G T PAAD 48539872 + 48539852 48539892 41 TGGCGGCTGGCAGCACACGGCAGCATCTGGACCAGCTCCAA TGGCGGCTGGCAGCACACGGCATCATCTGGACCAGCTCCAA < 41bp 0.832807377621461 0.519691809439235 0.18527395 0.043175697 prediction 0.626231136364452 Functional Loss - ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48539872 chr17:48539874 nonsynonymous SNV 0.524 2 23 hm5C_associated_SNPs_52797 0 0 1 0 2 ACSF2 chr17:48539781 3'AG 48539781 Downstream 94bp
chr17 48539874 48539874 1 + G T PAAD 48539872 + 48539852 48539892 41 TGGCGGCTGGCAGCACACGGCAGCATCTGGACCAGCTCCAA TGGCGGCTGGCAGCACACGGCATCATCTGGACCAGCTCCAA < 41bp 0.832807377621461 0.519691809439235 0.18527395 0.043175697 prediction 0.626231136364452 Functional Loss - ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48539872 chr17:48539874 nonsynonymous SNV 0.524 2 23 hm5C_associated_SNPs_52797 0 0 1 0 2 ACSF2 chr17:48539946 5'GT 48539946 Upstream 73bp
chr19 30934506 30934506 1 + G T LUAD 30934504 + 30934484 30934524 41 CCTGTGCCTTGGAGTGTCTTCGGCGGAGCCGGAAGCTGAGC CCTGTGCCTTGGAGTGTCTTCGTCGGAGCCGGAAGCTGAGC < 41bp 0.813078353112919 0.493924541969651 0.9131497 0.5053367 prediction 0.626156706225838 Functional Loss - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30934504 chr19:30934506 nonsynonymous SNV 0.506 1 23 hm5C_associated_SNPs_52800 0 0 1 0 1 ZNF536 chr19:30934468 3'AG 30934468 Downstream 39bp
chr8 22147806 22147806 1 + G T ACC 22147804 + 22147784 22147824 41 GGACAGATGGAGGGCTCTTCCTGCTAGCTGATGTCTCCCAT GGACAGATGGAGGGCTCTTCCTTCTAGCTGATGTCTCCCAT < 41bp 0.813076457056263 0.498163687328087 0.1954248 0.24694386 prediction 0.626152914112527 Functional Loss - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22147804 chr8:22147806 synonymous SNV . 0 23 hm5C_associated_SNPs_52801 0 0 0 0 2 PIWIL2 chr8:22147746 3'AG 22147746 Downstream 61bp
chr8 22147806 22147806 1 + G T ACC 22147804 + 22147784 22147824 41 GGACAGATGGAGGGCTCTTCCTGCTAGCTGATGTCTCCCAT GGACAGATGGAGGGCTCTTCCTTCTAGCTGATGTCTCCCAT < 41bp 0.813076457056263 0.498163687328087 0.1954248 0.24694386 prediction 0.626152914112527 Functional Loss - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22147804 chr8:22147806 synonymous SNV . 0 23 hm5C_associated_SNPs_52801 0 0 0 0 2 PIWIL2 chr8:22147859 5'GT 22147859 Upstream 54bp
chr16 57714214 57714214 1 + G T LUAD 57714211 + 57714191 57714231 41 TGGTCTTCTGAGGGCTGCTCCACGGAGGTCAGACCTGAGGG TGGTCTTCTGAGGGCTGCTCCACTGAGGTCAGACCTGAGGG < 41bp 0.813068164728418 0.426377042459156 0.7317311 0.20424733 prediction 0.626136329456835 Functional Loss - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714211 chr16:57714214 synonymous SNV . 0 24 hm5C_associated_SNPs_52802 0 0 0 0 2 ADGRG3 chr16:57714177 3'AG 57714177 Downstream 38bp
chr16 57714214 57714214 1 + G T LUAD 57714211 + 57714191 57714231 41 TGGTCTTCTGAGGGCTGCTCCACGGAGGTCAGACCTGAGGG TGGTCTTCTGAGGGCTGCTCCACTGAGGTCAGACCTGAGGG < 41bp 0.813068164728418 0.426377042459156 0.7317311 0.20424733 prediction 0.626136329456835 Functional Loss - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714211 chr16:57714214 synonymous SNV . 0 24 hm5C_associated_SNPs_52802 0 0 0 0 2 ADGRG3 chr16:57714277 5'GT 57714277 Upstream 64bp
chr9 98638319 98638319 1 + G T ESCA 98638317 + 98638297 98638337 41 GGCTCGGCCCCTCCCCCTGGCCGGATGGATCCGTCGGCGCC GGCTCGGCCCCTCCCCCTGGCCTGATGGATCCGTCGGCGCC < 41bp 0.821383340724226 0.508325177495954 0.8210399 0.10597646 prediction 0.626116326456545 Functional Loss - ERCC6L2 ENSG00000182150 CDS Human protein_coding chr9:98638317 chr9:98638319 nonsynonymous SNV 0.052 1 23 hm5C_associated_SNPs_52804 0 0 0 0 1 ERCC6L2 chr9:98638366 5'GT 98638366 Upstream 48bp
chr5 639258 639258 1 + G T LUSC 639256 + 639236 639276 41 GAAGAAGACGGCCCTGCAGGCGGCGCTCCTGGAGACGCTCT GAAGAAGACGGCCCTGCAGGCGTCGCTCCTGGAGACGCTCT < 41bp 0.813033158863193 0.490080931944598 0.5099927 0.15780729 prediction 0.626066317726386 Functional Loss - CEP72 ENSG00000112877 CDS Human protein_coding chr5:639256 chr5:639258 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_52807 0 0 0 0 1 CEP72 chr5:639204 3'AG 639204 Downstream 55bp
chr6 44144372 44144372 1 + G T LUAD 44144369 + 44144349 44144389 41 ATCCAGATGCAGCTGCTGCACAAGACGGAGGACGGGGAGTT ATCCAGATGCAGCTGCTGCACAATACGGAGGACGGGGAGTT < 41bp 0.88178219861271 0.568758431612864 0.2149702 0.09320101 prediction 0.626047533999693 Functional Loss - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44144369 chr6:44144372 nonsynonymous SNV 0.024 1 24 hm5C_associated_SNPs_52808 0 0 0 0 1 CAPN11 chr6:44144392 5'GT 44144392 Upstream 21bp
chr9 97054749 97054749 1 + G T LUAD 97054746 + 97054726 97054766 41 ACTACAGCCATCTGGTCTCCCTGGGTAAGGCTGGCCTGTTT ACTACAGCCATCTGGTCTCCCTGTGTAAGGCTGGCCTGTTT < 41bp 0.875680019100798 0.562660343139287 0.5276701 0.07590103 prediction 0.626039351923023 Functional Loss - ZNF169 ENSG00000175787 CDS Human protein_coding chr9:97054746 chr9:97054749 stopgain 0.198 0 24 hm5C_associated_SNPs_52809 0 0 0 0 1 ZNF169 chr9:97054749 5'GT 97054749 Upstream 1bp
chr1 159779996 159779996 1 + G T BLCA 159779993 + 159779973 159780013 41 CTTCTGGTTTATGTGAGATCCTGGAGAAAAGCTGGTCAGTA CTTCTGGTTTATGTGAGATCCTGTAGAAAAGCTGGTCAGTA < 41bp 0.863849805593724 0.55083970603521 0.8973311 0.34573734 prediction 0.626020199117027 Functional Loss - FCRL6 ENSG00000181036 CDS Human protein_coding chr1:159779993 chr1:159779996 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_52811 0 0 0 0 1 FCRL6 chr1:159780006 5'GT 159780006 Upstream 11bp
chr18 61652456 61652456 1 + G T LUAD 61652453 + 61652433 61652473 41 TGAGCATGGTCATTCTGCTTCCCGATGACAACACGGACCTC TGAGCATGGTCATTCTGCTTCCCTATGACAACACGGACCTC < 41bp 0.812993380568283 0.445112175455064 0.30876267 0.18356675 prediction 0.625986761136566 Functional Loss - SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61652453 chr18:61652456 nonsynonymous SNV 0.004 3 24 hm5C_associated_SNPs_52812 0 0 0 0 1 SERPINB8 chr18:61652479 5'GT 61652479 Upstream 24bp
chr2 27016114 27016114 1 + G T LUAD 27016112 + 27016092 27016132 41 CAAAGGATGTGCAACTGGCCCGGAGGATCCGGGGCCTTGAG CAAAGGATGTGCAACTGGCCCGTAGGATCCGGGGCCTTGAG < 41bp 0.812980260828918 0.494438244858288 0.8609494 0.30495822 prediction 0.625960521657836 Functional Loss - CENPA ENSG00000115163 CDS Human protein_coding chr2:27016112 chr2:27016114 synonymous SNV . 0 23 hm5C_associated_SNPs_52814 0 0 1 1 1 CENPA chr2:27016194 5'GT 27016194 Upstream 81bp
chr7 134613549 134613549 1 + G T LUSC 134613547 + 134613527 134613567 41 GATGATGAAGAGGAGGCAGCCCGGGAACGGCGCCGCCGAGC GATGATGAAGAGGAGGCAGCCCTGGAACGGCGCCGCCGAGC < 41bp 0.812978528258887 0.499449640483458 0.891122 0.12076831 prediction 0.625957056517773 Functional Loss - CALD1 ENSG00000122786 CDS Human protein_coding chr7:134613547 chr7:134613549 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_52815 0 0 1 0 1 CALD1 chr7:134613628 5'GT 134613628 Upstream 80bp
chr2 178257707 178257707 1 + G T SARC 178257705 + 178257685 178257725 41 TGAGTGCAAAGCGCGGAGAGCCGCGTCGGCGGCCACGGCAG TGAGTGCAAAGCGCGGAGAGCCTCGTCGGCGGCCACGGCAG < 41bp 0.812918098141329 0.494238198127555 0.16211513 0.06132108 prediction 0.625836196282658 Functional Loss - AGPS ENSG00000018510 CDS Human protein_coding chr2:178257705 chr2:178257707 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_52822 0 0 1 0 1 AGPS chr2:178257777 5'GT 178257777 Upstream 71bp
chr7 120971935 120971935 1 + G T UCEC 120971932 + 120971912 120971952 41 TGTGGTTCAGCAGAAAGTTCCTAGATTTCCCCATCGGAAAC TGTGGTTCAGCAGAAAGTTCCTATATTTCCCCATCGGAAAC < 41bp 0.812914862974393 0.455305616018911 0.32782274 0.10188028 prediction 0.625829725948785 Functional Loss - WNT16 ENSG00000002745 CDS Human protein_coding chr7:120971932 chr7:120971935 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_52824 0 0 0 0 1 WNT16 chr7:120972018 5'GT 120972018 Upstream 84bp
chr15 68434639 68434639 1 + G T LUSC 68434636 + 68434616 68434656 41 TGTCTCTTCTAGGGATATTTCTGGGACCAAATGTGACTTCA TGTCTCTTCTAGGGATATTTCTGTGACCAAATGTGACTTCA < 41bp 0.812913679775145 0.45498411161609 0.92164165 0.69067013 prediction 0.62582735955029 Functional Loss - PIAS1 ENSG00000033800 CDS Human protein_coding chr15:68434636 chr15:68434639 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52825 0 0 1 0 2 PIAS1 chr15:68434628 3'AG 68434628 Downstream 12bp
chr15 68434639 68434639 1 + G T LUSC 68434636 + 68434616 68434656 41 TGTCTCTTCTAGGGATATTTCTGGGACCAAATGTGACTTCA TGTCTCTTCTAGGGATATTTCTGTGACCAAATGTGACTTCA < 41bp 0.812913679775145 0.45498411161609 0.92164165 0.69067013 prediction 0.62582735955029 Functional Loss - PIAS1 ENSG00000033800 CDS Human protein_coding chr15:68434636 chr15:68434639 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52825 0 0 1 0 2 PIAS1 chr15:68434675 5'GT 68434675 Upstream 37bp
chr11 55032434 55032434 1 + A C LUAD 55032430 + 55032410 55032450 41 AGGGAACTCACCTGCCCCATCTGCATGAACTACTTCATAGA AGGGAACTCACCTGCCCCATCTGCCTGAACTACTTCATAGA < 41bp 0.812910283329089 0.412101468144466 0.06743389 0.05700758 prediction 0.625820566658178 Functional Loss - TRIM48 ENSG00000150244 CDS Human protein_coding chr11:55032430 chr11:55032434 nonsynonymous SNV 0.254 0 25 hm5C_associated_SNPs_52826 0 0 0 0 1 TRIM48 chr11:55032376 3'AG 55032376 Downstream 59bp
chr1 36553096 36553096 1 + G T UCEC 36553094 + 36553074 36553114 41 TCCGGCACCTGGAGGAGGATCTGCGCACAAAGCTCCTGAGC TCCGGCACCTGGAGGAGGATCTTCGCACAAAGCTCCTGAGC < 41bp 0.819150599655736 0.506254633584885 0.7144537 0.52576977 prediction 0.625791932141702 Functional Loss - TEKT2 ENSG00000092850 CDS Human protein_coding chr1:36553094 chr1:36553096 synonymous SNV . 0 23 hm5C_associated_SNPs_52828 0 0 0 0 2 TEKT2 chr1:36553040 3'AG 36553040 Downstream 57bp
chr1 36553096 36553096 1 + G T UCEC 36553094 + 36553074 36553114 41 TCCGGCACCTGGAGGAGGATCTGCGCACAAAGCTCCTGAGC TCCGGCACCTGGAGGAGGATCTTCGCACAAAGCTCCTGAGC < 41bp 0.819150599655736 0.506254633584885 0.7144537 0.52576977 prediction 0.625791932141702 Functional Loss - TEKT2 ENSG00000092850 CDS Human protein_coding chr1:36553094 chr1:36553096 synonymous SNV . 0 23 hm5C_associated_SNPs_52828 0 0 0 0 2 TEKT2 chr1:36553183 5'GT 36553183 Upstream 88bp
chr18 9815192 9815192 1 + G T READ 9815189 + 9815169 9815209 41 AAACATTGTAATGGCCATCGCTGGAAACAAGTGCGACCTCT AAACATTGTAATGGCCATCGCTGTAAACAAGTGCGACCTCT < 41bp 0.812876902799022 0.453095070571919 0.238799 0.08899835 prediction 0.625753805598044 Functional Loss - RAB31 ENSG00000168461 CDS Human protein_coding chr18:9815189 chr18:9815192 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_52830 0 0 1 0 2 RAB31 chr18:9815113 3'AG 9815113 Downstream 80bp
chr18 9815192 9815192 1 + G T READ 9815189 + 9815169 9815209 41 AAACATTGTAATGGCCATCGCTGGAAACAAGTGCGACCTCT AAACATTGTAATGGCCATCGCTGTAAACAAGTGCGACCTCT < 41bp 0.812876902799022 0.453095070571919 0.238799 0.08899835 prediction 0.625753805598044 Functional Loss - RAB31 ENSG00000168461 CDS Human protein_coding chr18:9815189 chr18:9815192 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_52830 0 0 1 0 2 RAB31 chr18:9815219 5'GT 9815219 Upstream 28bp
chr16 89702774 89702774 1 + G T UCEC 89702772 + 89702752 89702792 41 CCGCATGTGCCGGATGTACCCGGAGACCTTCCTGTATGTCA CCGCATGTGCCGGATGTACCCGTAGACCTTCCTGTATGTCA < 41bp 0.844882320043933 0.532014719938373 0.89144766 0.23156768 prediction 0.625735200211119 Functional Loss - DPEP1 ENSG00000015413 CDS Human protein_coding chr16:89702772 chr16:89702774 stopgain 0.109 1 23 hm5C_associated_SNPs_52831 0 0 0 0 1 DPEP1 chr16:89702804 5'GT 89702804 Upstream 31bp
chr13 100020106 100020106 1 + G T LUSC 100020104 + 100020084 100020124 41 AGCGACAAAACGTAAACTATCAGGGCGGTCGGCAGTCTGAG AGCGACAAAACGTAAACTATCATGGCGGTCGGCAGTCTGAG < 41bp 0.826432126024143 0.513591507744766 0.94808674 0.91236836 prediction 0.625681236558754 Functional Loss - UBAC2 ENSG00000134882 CDS Human protein_coding chr13:100020104 chr13:100020106 nonsynonymous SNV 0.836 0 23 hm5C_associated_SNPs_52833 0 0 1 0 2 UBAC2 chr13:100020041 3'AG 100020041 Downstream 66bp
chr13 100020106 100020106 1 + G T LUSC 100020104 + 100020084 100020124 41 AGCGACAAAACGTAAACTATCAGGGCGGTCGGCAGTCTGAG AGCGACAAAACGTAAACTATCATGGCGGTCGGCAGTCTGAG < 41bp 0.826432126024143 0.513591507744766 0.94808674 0.91236836 prediction 0.625681236558754 Functional Loss - UBAC2 ENSG00000134882 CDS Human protein_coding chr13:100020104 chr13:100020106 nonsynonymous SNV 0.836 0 23 hm5C_associated_SNPs_52833 0 0 1 0 2 UBAC2 chr13:100020160 5'GT 100020160 Upstream 55bp
chr1 18661457 18661457 1 + G T BLCA 18661455 + 18661435 18661475 41 GGCATCTACGACCGCGCCACCAGGGAGAAGGTGGTCCTGGC GGCATCTACGACCGCGCCACCATGGAGAAGGTGGTCCTGGC < 41bp 0.812839817897194 0.491096822355628 0.9128548 0.44632295 prediction 0.625679635794388 Functional Loss - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18661455 chr1:18661457 nonsynonymous SNV 0.979 4 23 hm5C_associated_SNPs_52834 0 0 0 0 2 IGSF21 chr1:18661386 3'AG 18661386 Downstream 72bp
chr1 18661457 18661457 1 + G T BLCA 18661455 + 18661435 18661475 41 GGCATCTACGACCGCGCCACCAGGGAGAAGGTGGTCCTGGC GGCATCTACGACCGCGCCACCATGGAGAAGGTGGTCCTGGC < 41bp 0.812839817897194 0.491096822355628 0.9128548 0.44632295 prediction 0.625679635794388 Functional Loss - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18661455 chr1:18661457 nonsynonymous SNV 0.979 4 23 hm5C_associated_SNPs_52834 0 0 0 0 2 IGSF21 chr1:18661504 5'GT 18661504 Upstream 48bp
chr19 16186956 16186956 1 + G T UCEC 16186953 + 16186933 16186973 41 TGAAGGACGCGCAGGAGAAGCTGGAGCTCACGGAGAAGAAG TGAAGGACGCGCAGGAGAAGCTGTAGCTCACGGAGAAGAAG < 41bp 0.812835219889434 0.492989131033236 0.60976595 0.21843094 prediction 0.625670439778869 Functional Loss - TPM4 ENSG00000167460 CDS Human protein_coding chr19:16186953 chr19:16186956 stopgain 0.802 0 24 hm5C_associated_SNPs_52835 0 0 0 0 2 TPM4 chr19:16186857 3'AG 16186857 Downstream 100bp
chr19 16186956 16186956 1 + G T UCEC 16186953 + 16186933 16186973 41 TGAAGGACGCGCAGGAGAAGCTGGAGCTCACGGAGAAGAAG TGAAGGACGCGCAGGAGAAGCTGTAGCTCACGGAGAAGAAG < 41bp 0.812835219889434 0.492989131033236 0.60976595 0.21843094 prediction 0.625670439778869 Functional Loss - TPM4 ENSG00000167460 CDS Human protein_coding chr19:16186953 chr19:16186956 stopgain 0.802 0 24 hm5C_associated_SNPs_52835 0 0 0 0 2 TPM4 chr19:16186982 5'GT 16186982 Upstream 27bp
chr2 171686061 171686061 1 + G T COAD 171686058 + 171686038 171686078 41 TTCAAGGAGAGGCAATCCTCCAAGAACCTGCTTTCCTGTGA TTCAAGGAGAGGCAATCCTCCAATAACCTGCTTTCCTGTGA < 41bp 0.869020566764424 0.556211956019259 0.31195486 0.0033052564 prediction 0.625617221490331 Functional Loss - GAD1 ENSG00000128683 CDS Human protein_coding chr2:171686058 chr2:171686061 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_52836 0 0 0 0 2 GAD1 chr2:171685985 3'AG 171685985 Downstream 77bp
chr2 171686061 171686061 1 + G T COAD 171686058 + 171686038 171686078 41 TTCAAGGAGAGGCAATCCTCCAAGAACCTGCTTTCCTGTGA TTCAAGGAGAGGCAATCCTCCAATAACCTGCTTTCCTGTGA < 41bp 0.869020566764424 0.556211956019259 0.31195486 0.0033052564 prediction 0.625617221490331 Functional Loss - GAD1 ENSG00000128683 CDS Human protein_coding chr2:171686058 chr2:171686061 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_52836 0 0 0 0 2 GAD1 chr2:171686143 5'GT 171686143 Upstream 83bp
chr15 76632705 76632705 1 + G T UCEC 76632702 + 76632682 76632722 41 CGCGTGCGGACTGTGCTGAACGAGAAGCAGCTGCACACTCT CGCGTGCGGACTGTGCTGAACGATAAGCAGCTGCACACTCT < 41bp 0.878380166024086 0.565579159265553 0.6991242 0.41127902 prediction 0.625602013517066 Functional Loss - ISL2 ENSG00000159556 CDS Human protein_coding chr15:76632702 chr15:76632705 stopgain 1.000 5 24 hm5C_associated_SNPs_52837 0 0 1 0 1 ISL2 chr15:76632617 3'AG 76632617 Downstream 89bp
chr3 148558536 148558536 1 + A C LUSC 148558532 + 148558512 148558552 41 GTTTGATAGCCGGGTTCGTGCAACAGGACACAGTTATGAGA GTTTGATAGCCGGGTTCGTGCAACCGGACACAGTTATGAGA < 41bp 0.812794277278256 0.419957471354659 0.21008658 0.28932 prediction 0.625588554556512 Functional Loss - CPB1 ENSG00000153002 CDS Human protein_coding chr3:148558532 chr3:148558536 synonymous SNV . 0 25 hm5C_associated_SNPs_52838 0 0 0 0 1 CPB1 chr3:148558572 5'GT 148558572 Upstream 37bp
chr11 67171759 67171759 1 + G T SARC 67171757 + 67171737 67171777 41 TTGGGGTCCGACTCAGAGCTCAGCGGGCCTGGCCCATATCG TTGGGGTCCGACTCAGAGCTCATCGGGCCTGGCCCATATCG < 41bp 0.830647215941286 0.517890585378565 0.9316268 0.593665 prediction 0.625513261125442 Functional Loss - TBC1D10C ENSG00000175463 CDS Human protein_coding chr11:67171757 chr11:67171759 nonsynonymous SNV 0.935 0 23 hm5C_associated_SNPs_52839 0 0 0 0 1 TBC1D10C chr11:67171662 3'AG 67171662 Downstream 98bp
chr17 21207849 21207849 1 + G T LUSC 21207847 + 21207827 21207867 41 GCCAAGACGATGGATGCCGGCTGCAAGCCCTACATGGCCGT GCCAAGACGATGGATGCCGGCTTCAAGCCCTACATGGCCGT < 41bp 0.812717985393112 0.48938051308857 0.16859165 0.070399255 prediction 0.625435970786223 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21207847 chr17:21207849 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52841 0 0 1 0 1 MAP2K3 chr17:21207865 5'GT 21207865 Upstream 17bp
chr17 34144726 34144726 1 + G T SKCM 34144723 + 34144703 34144743 41 CTTTTTATGTGTTCTAGATTCTGGAAGTTACGGTCAGTCTG CTTTTTATGTGTTCTAGATTCTGTAAGTTACGGTCAGTCTG < 41bp 0.853613921767503 0.540913749343464 0.24440852 0.086253405 prediction 0.625400344848078 Functional Loss - TAF15 ENSG00000172660 CDS Human other chr17:34144723 chr17:34144726 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52844 0 0 1 0 2 TAF15 chr17:34144720 3'AG 34144720 Downstream 7bp
chr17 34144726 34144726 1 + G T SKCM 34144723 + 34144703 34144743 41 CTTTTTATGTGTTCTAGATTCTGGAAGTTACGGTCAGTCTG CTTTTTATGTGTTCTAGATTCTGTAAGTTACGGTCAGTCTG < 41bp 0.853613921767503 0.540913749343464 0.24440852 0.086253405 prediction 0.625400344848078 Functional Loss - TAF15 ENSG00000172660 CDS Human other chr17:34144723 chr17:34144726 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52844 0 0 1 0 2 TAF15 chr17:34144759 5'GT 34144759 Upstream 34bp
chr9 104075196 104075196 1 + G T SKCM 104075194 + 104075174 104075214 41 TCAACCGGGTCTCTGAGTATCGGAACCACTGCTCGGACGTG TCAACCGGGTCTCTGAGTATCGTAACCACTGCTCGGACGTG < 41bp 0.812696901404191 0.488924550131477 0.9248472 0.3733284 prediction 0.625393802808382 Functional Loss - PLPPR1 ENSG00000148123 CDS Human protein_coding chr9:104075194 chr9:104075196 synonymous SNV . 0 23 hm5C_associated_SNPs_52845 0 0 1 0 1 PLPPR1 chr9:104075256 5'GT 104075256 Upstream 61bp
chr1 17607195 17607195 1 + G T SARC 17607193 + 17607173 17607213 41 TCGACTGGAACCGTGAGGTGCTGAAGCGGGAGCTGGGCCTG TCGACTGGAACCGTGAGGTGCTTAAGCGGGAGCTGGGCCTG < 41bp 0.823064074744848 0.510369694045607 0.87457263 0.80658734 prediction 0.625388761398482 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17607193 chr1:17607195 synonymous SNV . 0 23 hm5C_associated_SNPs_52846 0 0 0 0 2 PADI3 chr1:17607166 3'AG 17607166 Downstream 30bp
chr1 17607195 17607195 1 + G T SARC 17607193 + 17607173 17607213 41 TCGACTGGAACCGTGAGGTGCTGAAGCGGGAGCTGGGCCTG TCGACTGGAACCGTGAGGTGCTTAAGCGGGAGCTGGGCCTG < 41bp 0.823064074744848 0.510369694045607 0.87457263 0.80658734 prediction 0.625388761398482 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17607193 chr1:17607195 synonymous SNV . 0 23 hm5C_associated_SNPs_52846 0 0 0 0 2 PADI3 chr1:17607291 5'GT 17607291 Upstream 97bp
chr1 100964796 100964796 1 + G T UCEC 100964793 + 100964773 100964813 41 CGGGCTTTCTTCTTCTTCAGCGAGATTCCTGAGCCGTTCTA CGGGCTTTCTTCTTCTTCAGCGATATTCCTGAGCCGTTCTA < 41bp 0.812668959281833 0.457599667369315 0.75474244 0.22226822 prediction 0.625337918563667 Functional Loss - CDC14A ENSG00000079335 CDS Human protein_coding chr1:100964793 chr1:100964796 nonsynonymous SNV 0.985 4 24 hm5C_associated_SNPs_52850 0 0 1 0 1 CDC14A chr1:100964818 5'GT 100964818 Upstream 23bp
chr7 130008324 130008324 1 + G T COAD 130008322 + 130008302 130008342 41 ACGCCTTCAGCTTTGAGCTCCGGGACACTGGGCAGTATGGC ACGCCTTCAGCTTTGAGCTCCGTGACACTGGGCAGTATGGC < 41bp 0.817643772521024 0.505007617793258 0.54868495 0.10384536 prediction 0.625272309455532 Functional Loss - CPA5 ENSG00000158525 CDS Human protein_coding chr7:130008322 chr7:130008324 nonsynonymous SNV 0.972 1 23 hm5C_associated_SNPs_52853 0 0 0 0 1 CPA5 chr7:130008251 3'AG 130008251 Downstream 74bp
chr3 132051146 132051146 1 + G T UCEC 132051143 + 132051123 132051163 41 ATCTGGAATCCTATCCTACTCTGGCAGCCCATCCCGGTGCA ATCTGGAATCCTATCCTACTCTGTCAGCCCATCCCGGTGCA < 41bp 0.81262703494022 0.437152756000778 0.15906852 0.044828832 prediction 0.625254069880439 Functional Loss - ACPP ENSG00000014257 CDS Human protein_coding chr3:132051143 chr3:132051146 nonsynonymous SNV 0.977 4 24 hm5C_associated_SNPs_52855 0 0 0 0 1 ACPP chr3:132051188 5'GT 132051188 Upstream 43bp
chr17 78079646 78079646 1 + G T COAD 78079643 + 78079623 78079663 41 CTCTACAGCGTGGAGTTCTCCGAGGAGCCCTTCGGGGTGAT CTCTACAGCGTGGAGTTCTCCGATGAGCCCTTCGGGGTGAT < 41bp 0.812606469894972 0.439242007944004 0.90408516 0.34869474 prediction 0.625212939789945 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78079643 chr17:78079646 nonsynonymous SNV 0.962 1 24 hm5C_associated_SNPs_52856 0 0 1 0 2 GAA chr17:78079548 3'AG 78079548 Downstream 99bp
chr17 78079646 78079646 1 + G T COAD 78079643 + 78079623 78079663 41 CTCTACAGCGTGGAGTTCTCCGAGGAGCCCTTCGGGGTGAT CTCTACAGCGTGGAGTTCTCCGATGAGCCCTTCGGGGTGAT < 41bp 0.812606469894972 0.439242007944004 0.90408516 0.34869474 prediction 0.625212939789945 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78079643 chr17:78079646 nonsynonymous SNV 0.962 1 24 hm5C_associated_SNPs_52856 0 0 1 0 2 GAA chr17:78079693 5'GT 78079693 Upstream 48bp
chr1 22986043 22986043 1 + A C LUAD 22986039 + 22986019 22986059 41 ATCTCCCAGGCCCAGCTCAGCTGCACCGGGCCCCCAGCCAT ATCTCCCAGGCCCAGCTCAGCTGCCCCGGGCCCCCAGCCAT < 41bp 0.893096847308274 0.580501938525085 0.48665795 0.37802675 prediction 0.625189817566376 Functional Loss - C1QB ENSG00000173369 CDS Human protein_coding chr1:22986039 chr1:22986043 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_52857 0 0 0 0 1 C1QB chr1:22986136 5'GT 22986136 Upstream 94bp
chr15 41146841 41146841 1 + G T GBM 41146838 + 41146818 41146858 41 TGACCTTTCCTCTCTGCAGACACGAGTGGCTTTGACGAGCT TGACCTTTCCTCTCTGCAGACACTAGTGGCTTTGACGAGCT < 41bp 0.812588068308168 0.457055748059233 0.28139338 0.061476827 prediction 0.625176136616336 Functional Loss - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41146838 chr15:41146841 synonymous SNV . 0 24 hm5C_associated_SNPs_52858 0 0 0 0 2 SPINT1 chr15:41146837 3'AG 41146837 Downstream 5bp
chr15 41146841 41146841 1 + G T GBM 41146838 + 41146818 41146858 41 TGACCTTTCCTCTCTGCAGACACGAGTGGCTTTGACGAGCT TGACCTTTCCTCTCTGCAGACACTAGTGGCTTTGACGAGCT < 41bp 0.812588068308168 0.457055748059233 0.28139338 0.061476827 prediction 0.625176136616336 Functional Loss - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41146838 chr15:41146841 synonymous SNV . 0 24 hm5C_associated_SNPs_52858 0 0 0 0 2 SPINT1 chr15:41146887 5'GT 41146887 Upstream 47bp
chr2 44021678 44021678 1 + A C GBM 44021674 + 44021654 44021694 41 ATGGAAAATCTCTTGCAAGCCACAAAAAGCCATGTAGACAA ATGGAAAATCTCTTGCAAGCCACACAAAGCCATGTAGACAA < 41bp 0.854488705334382 0.541947141867384 0.165346 0.012626022 prediction 0.625083126933994 Functional Loss - DYNC2LI1 ENSG00000138036 CDS Human protein_coding chr2:44021674 chr2:44021678 nonsynonymous SNV 0.993 1 25 hm5C_associated_SNPs_52862 0 0 1 2 1 DYNC2LI1 chr2:44021596 3'AG 44021596 Downstream 83bp
chr8 43212099 43212099 1 + G T UCEC 43212096 + 43212076 43212116 41 CTCAGAAAGGTGAATGTGAGCAAGAACGCTACAGTTCGAGG CTCAGAAAGGTGAATGTGAGCAATAACGCTACAGTTCGAGG < 41bp 0.812537515154362 0.495438916166902 0.12907714 0.09063706 prediction 0.625075030308723 Functional Loss - POTEA ENSG00000188877 ncRNA_exonic Human polymorphic_pseudogene chr8:43212096 chr8:43212099 . . 0 24 hm5C_associated_SNPs_52863 0 0 0 0 1 POTEA chr8:43212115 5'GT 43212115 Upstream 17bp
chr10 75535321 75535321 1 + G T OV 75535318 + 75535298 75535338 41 GTTGGAAAGAGATGTGGCTGCAAGATTATTGGCAAGGTCTG GTTGGAAAGAGATGTGGCTGCAATATTATTGGCAAGGTCTG < 41bp 0.81252984140655 0.459154910443196 0.8653071 0.48057348 prediction 0.625059682813099 Functional Loss - FUT11 ENSG00000196968 CDS Human protein_coding chr10:75535318 chr10:75535321 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52865 0 0 1 0 1 FUT11 chr10:75535299 3'AG 75535299 Downstream 23bp
chr8 124975546 124975546 1 + G T LUAD 124975544 + 124975524 124975564 41 AAGGTGACACTGAAGCACTGCAGGAGGAGCCTTCTCACCAG AAGGTGACACTGAAGCACTGCATGAGGAGCCTTCTCACCAG < 41bp 0.812606757082196 0.500139435437393 0.82044303 0.10741401 prediction 0.624934643289605 Functional Loss - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:124975544 chr8:124975546 nonsynonymous SNV 0.791 0 23 hm5C_associated_SNPs_52869 0 0 0 0 2 FER1L6 chr8:124975518 3'AG 124975518 Downstream 29bp
chr8 124975546 124975546 1 + G T LUAD 124975544 + 124975524 124975564 41 AAGGTGACACTGAAGCACTGCAGGAGGAGCCTTCTCACCAG AAGGTGACACTGAAGCACTGCATGAGGAGCCTTCTCACCAG < 41bp 0.812606757082196 0.500139435437393 0.82044303 0.10741401 prediction 0.624934643289605 Functional Loss - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:124975544 chr8:124975546 nonsynonymous SNV 0.791 0 23 hm5C_associated_SNPs_52869 0 0 0 0 2 FER1L6 chr8:124975638 5'GT 124975638 Upstream 93bp
chrX 48340055 48340055 1 + G T LUAD 48340052 + 48340032 48340072 41 TCTGTCAGGGCTATGACCCTCCCGAGGGCTTCATCCCGGAC TCTGTCAGGGCTATGACCCTCCCTAGGGCTTCATCCCGGAC < 41bp 0.873855249694074 0.561395945282082 0.35923177 0.23861244 prediction 0.624918608823983 Functional Loss - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48340052 chrX:48340055 stopgain 0.993 0 24 hm5C_associated_SNPs_52870 0 0 1 0 2 FTSJ1 chrX:48340020 3'AG 48340020 Downstream 36bp
chrX 48340055 48340055 1 + G T LUAD 48340052 + 48340032 48340072 41 TCTGTCAGGGCTATGACCCTCCCGAGGGCTTCATCCCGGAC TCTGTCAGGGCTATGACCCTCCCTAGGGCTTCATCCCGGAC < 41bp 0.873855249694074 0.561395945282082 0.35923177 0.23861244 prediction 0.624918608823983 Functional Loss - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48340052 chrX:48340055 stopgain 0.993 0 24 hm5C_associated_SNPs_52870 0 0 1 0 2 FTSJ1 chrX:48340103 5'GT 48340103 Upstream 49bp
chr14 77302651 77302651 1 + G T UCEC 77302649 + 77302629 77302669 41 TACAAGAGAACTACTACCTCCAGGAGATGGTACTGTGCCCC TACAAGAGAACTACTACCTCCATGAGATGGTACTGTGCCCC < 41bp 0.816475575076846 0.50403906924046 0.9260337 0.774789 prediction 0.624873011672771 Functional Loss - LRRC74A ENSG00000100565 CDS Human protein_coding chr14:77302649 chr14:77302651 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_52872 0 0 0 1 1 LRRC74A chr14:77302657 5'GT 77302657 Upstream 7bp
chr14 64886605 64886605 1 + G T LIHC 64886602 + 64886582 64886622 41 TAAAGGGGAGTGGATCAAACCTGGGGCAATAGTCATCGACT TAAAGGGGAGTGGATCAAACCTGTGGCAATAGTCATCGACT < 41bp 0.812426578054261 0.440810741401235 0.67805403 0.113422364 prediction 0.624853156108523 Functional Loss - MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64886602 chr14:64886605 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_52873 0 0 1 0 2 MTHFD1 chr14:64886532 3'AG 64886532 Downstream 74bp
chr14 64886605 64886605 1 + G T LIHC 64886602 + 64886582 64886622 41 TAAAGGGGAGTGGATCAAACCTGGGGCAATAGTCATCGACT TAAAGGGGAGTGGATCAAACCTGTGGCAATAGTCATCGACT < 41bp 0.812426578054261 0.440810741401235 0.67805403 0.113422364 prediction 0.624853156108523 Functional Loss - MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64886602 chr14:64886605 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_52873 0 0 1 0 2 MTHFD1 chr14:64886643 5'GT 64886643 Upstream 39bp
chr22 42276797 42276797 1 + G T LUAD 42276795 + 42276775 42276815 41 GGGCACTGCCCACCTCCCGCCTGGACCTGGCCTGCAGCCTC GGGCACTGCCCACCTCCCGCCTTGACCTGGCCTGCAGCCTC < 41bp 0.812402405857648 0.485992343132897 0.43832365 0.13287878 prediction 0.624804811715297 Functional Loss - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42276795 chr22:42276797 stopgain 1.000 0 23 hm5C_associated_SNPs_52876 0 0 1 0 1 SREBF2 chr22:42276720 3'AG 42276720 Downstream 78bp
chr15 89169966 89169966 1 + G T rs549443521 89169963 + 89169943 89169983 41 TGCGCAAGGCTGTCCCCTTCCAGGTGGCCCAGAAAGAGGTA TGCGCAAGGCTGTCCCCTTCCAGTTGGCCCAGAAAGAGGTA < 41bp 0.812330511763988 0.437202291003129 0.9030411 0.5711068 prediction 0.624661023527976 Functional Loss - AEN ENSG00000181026 CDS Human protein_coding chr15:89169963 chr15:89169966 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_52879 0 0 1 0 1 AEN chr15:89169980 5'GT 89169980 Upstream 15bp
chr16 20429537 20429537 1 + G T UCEC 20429534 + 20429514 20429554 41 AGCCTGGGGACAGAATGATGCTGGTACTCCCACGGCTCCCG AGCCTGGGGACAGAATGATGCTGTTACTCCCACGGCTCCCG < 41bp 0.812330370877515 0.430146785357853 0.73703414 0.40942746 prediction 0.62466074175503 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20429534 chr16:20429537 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_52880 0 0 0 0 1 ACSM5 chr16:20429591 5'GT 20429591 Upstream 55bp
chr9 72435884 72435884 1 + A C rs149641101 72435880 + 72435860 72435900 41 GACCACCGGACTTGGTGGAGCGCAAGGGCTCCCTGACCCTC GACCACCGGACTTGGTGGAGCGCACGGGCTCCCTGACCCTC < 41bp 0.812303463715638 0.483192764169816 0.7124655 0.47482532 prediction 0.624606927431275 Functional Loss - C9orf135 ENSG00000204711 CDS Human protein_coding chr9:72435880 chr9:72435884 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_52884 0 0 0 0 1 C9orf135 chr9:72435947 5'GT 72435947 Upstream 64bp
chr19 5772927 5772927 1 + G T LUAD 5772925 + 5772905 5772945 41 TGTACCTCCCAGCCGCAGAACTGGACCACCATGATAAAGGA TGTACCTCCCAGCCGCAGAACTTGACCACCATGATAAAGGA < 41bp 0.812287596690008 0.490113792727024 0.47498745 0.23199725 prediction 0.624575193380015 Functional Loss - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5772925 chr19:5772927 nonsynonymous SNV 0.857 3 23 hm5C_associated_SNPs_52885 0 0 0 0 1 CATSPERD chr19:5772976 5'GT 5772976 Upstream 50bp
chr19 5772928 5772928 1 + G T LUAD 5772925 + 5772905 5772945 41 TGTACCTCCCAGCCGCAGAACTGGACCACCATGATAAAGGA TGTACCTCCCAGCCGCAGAACTGTACCACCATGATAAAGGA < 41bp 0.812287596690008 0.437215687904025 0.47498745 0.3783481 prediction 0.624575193380015 Functional Loss - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5772925 chr19:5772928 nonsynonymous SNV 0.741 3 24 hm5C_associated_SNPs_52886 0 0 0 0 1 CATSPERD chr19:5772976 5'GT 5772976 Upstream 49bp
chr16 67132628 67132628 1 + G T COAD 67132625 + 67132605 67132645 41 CATTGCAGGCAAGAAGACAACAAGACCCTAGTCCTGGTTCC CATTGCAGGCAAGAAGACAACAATACCCTAGTCCTGGTTCC < 41bp 0.812285990441773 0.46516590043062 0.068463415 0.04240343 prediction 0.624571980883546 Functional Loss - CBFB ENSG00000067955 CDS Human protein_coding chr16:67132625 chr16:67132628 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_52887 0 0 1 0 1 CBFB chr16:67132613 3'AG 67132613 Downstream 16bp
chr15 38776538 38776538 1 + A C UCEC 38776534 + 38776514 38776554 41 CTCCAGAAATGCCCCCTTGGCAAAAGAGACAAGAAGGCGGC CTCCAGAAATGCCCCCTTGGCAAACGAGACAAGAAGGCGGC < 41bp 0.883601407551785 0.571324089274574 0.10456672 0.1122278 prediction 0.624554636554423 Functional Loss - FAM98B ENSG00000171262 CDS Human protein_coding chr15:38776534 chr15:38776538 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_52890 0 0 1 0 1 FAM98B chr15:38776456 3'AG 38776456 Downstream 83bp
chr17 5993702 5993702 1 + G T SARC 5993700 + 5993680 5993720 41 TTACTGCGGGAACCGGCTGCCAGCGGTGAGCGTGGGGCTGG TTACTGCGGGAACCGGCTGCCATCGGTGAGCGTGGGGCTGG < 41bp 0.81226700081888 0.485198212561444 0.86978364 0.50943404 prediction 0.62453400163776 Functional Loss - WSCD1 ENSG00000179314 CDS Human protein_coding chr17:5993700 chr17:5993702 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_52891 0 0 1 0 1 WSCD1 chr17:5993641 3'AG 5993641 Downstream 62bp
chr20 36028594 36028594 1 + G T LUAD 36028592 + 36028572 36028612 41 TGTCTCCAGAGGCCTTCCTGCAGGAGGCCCAGGTCATGAAG TGTCTCCAGAGGCCTTCCTGCATGAGGCCCAGGTCATGAAG < 41bp 0.812266032932634 0.485921769352066 0.9114373 0.39563906 prediction 0.624532065865268 Functional Loss - SRC ENSG00000197122 CDS Human protein_coding chr20:36028592 chr20:36028594 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_52892 0 0 1 0 1 SRC chr20:36028518 3'AG 36028518 Downstream 77bp
chr7 37890021 37890021 1 + G T LUSC 37890019 + 37889999 37890039 41 GCCTGTGGGATGAGATGTTGCAGAACAAAGGCTTAACAGGT GCCTGTGGGATGAGATGTTGCATAACAAAGGCTTAACAGGT < 41bp 0.812253920437449 0.498271722396754 0.21862349 0.043439507 prediction 0.624507840874897 Functional Loss - NME8 ENSG00000086288 CDS Human protein_coding chr7:37890019 chr7:37890021 nonsynonymous SNV 0.989 1 23 hm5C_associated_SNPs_52893 0 0 0 0 2 NME8 chr7:37889980 3'AG 37889980 Downstream 42bp
chr7 37890021 37890021 1 + G T LUSC 37890019 + 37889999 37890039 41 GCCTGTGGGATGAGATGTTGCAGAACAAAGGCTTAACAGGT GCCTGTGGGATGAGATGTTGCATAACAAAGGCTTAACAGGT < 41bp 0.812253920437449 0.498271722396754 0.21862349 0.043439507 prediction 0.624507840874897 Functional Loss - NME8 ENSG00000086288 CDS Human protein_coding chr7:37890019 chr7:37890021 nonsynonymous SNV 0.989 1 23 hm5C_associated_SNPs_52893 0 0 0 0 2 NME8 chr7:37890037 5'GT 37890037 Upstream 17bp
chr8 120431488 120431488 1 + G T LUAD 120431486 + 120431466 120431506 41 TGTGGTATGGGGTTCTCCACCCGGGTCACCAATAGGAACCG TGTGGTATGGGGTTCTCCACCCTGGTCACCAATAGGAACCG < 41bp 0.817066317228286 0.50481648065386 0.93377745 0.28941983 prediction 0.624499673148851 Functional Loss - NOV ENSG00000136999 CDS Human protein_coding chr8:120431486 chr8:120431488 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_52895 0 0 0 0 1 NOV chr8:120431585 5'GT 120431585 Upstream 98bp
chr14 24644825 24644825 1 + G T UCEC 24644823 + 24644803 24644843 41 CCTGAAGTTCCTACAGAGCCCAGGGAGCCAGGTCAGCAGAG CCTGAAGTTCCTACAGAGCCCATGGAGCCAGGTCAGCAGAG < 41bp 0.836623430522402 0.524395008753341 0.619407 0.0562568 prediction 0.624456843538121 Functional Loss - REC8 ENSG00000100918 CDS Human protein_coding chr14:24644823 chr14:24644825 nonsynonymous SNV 0.361 1 23 hm5C_associated_SNPs_52897 0 0 1 0 2 REC8 chr14:24644752 3'AG 24644752 Downstream 74bp
chr14 24644825 24644825 1 + G T UCEC 24644823 + 24644803 24644843 41 CCTGAAGTTCCTACAGAGCCCAGGGAGCCAGGTCAGCAGAG CCTGAAGTTCCTACAGAGCCCATGGAGCCAGGTCAGCAGAG < 41bp 0.836623430522402 0.524395008753341 0.619407 0.0562568 prediction 0.624456843538121 Functional Loss - REC8 ENSG00000100918 CDS Human protein_coding chr14:24644823 chr14:24644825 nonsynonymous SNV 0.361 1 23 hm5C_associated_SNPs_52897 0 0 1 0 2 REC8 chr14:24644833 5'GT 24644833 Upstream 9bp
chr7 100866000 100866000 1 + G T LUAD 100865997 + 100865977 100866017 41 AACTTCCAGGATGACCCCCACGCGGGACTCCCTCAGCTCGG AACTTCCAGGATGACCCCCACGCTGGACTCCCTCAGCTCGG < 41bp 0.870061033650829 0.557836428978053 0.5608838 0.091498405 prediction 0.624449209345552 Functional Loss - ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100865997 chr7:100866000 synonymous SNV . 0 24 hm5C_associated_SNPs_52898 0 0 1 0 1 ZNHIT1 chr7:100866055 5'GT 100866055 Upstream 56bp
chr9 98678548 98678548 1 + G T UCEC 98678545 + 98678525 98678565 41 TTAGGGAGTGGGACCTACTTCAAGAAGCAGTTTTCTGACCC TTAGGGAGTGGGACCTACTTCAATAAGCAGTTTTCTGACCC < 41bp 0.862272147336091 0.550128113918376 0.66529834 0.18727937 prediction 0.624288066835429 Functional Loss - ERCC6L2 ENSG00000182150 CDS Human protein_coding chr9:98678545 chr9:98678548 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_52904 0 0 1 0 1 ERCC6L2 chr9:98678509 3'AG 98678509 Downstream 40bp
chr1 87025960 87025960 1 + G T UCEC 87025958 + 87025938 87025978 41 ACCATACACCAAGCAGTTCACAGAATGTGGAGAGAAAGGCG ACCATACACCAAGCAGTTCACATAATGTGGAGAGAAAGGCG < 41bp 0.812131459962799 0.498436714389291 0.18579039 0.053085357 prediction 0.624262919925597 Functional Loss - CLCA4 ENSG00000016602 CDS Human protein_coding chr1:87025958 chr1:87025960 stopgain 0.940 0 23 hm5C_associated_SNPs_52907 0 0 0 0 2 CLCA4 chr1:87025894 3'AG 87025894 Downstream 67bp
chr1 87025960 87025960 1 + G T UCEC 87025958 + 87025938 87025978 41 ACCATACACCAAGCAGTTCACAGAATGTGGAGAGAAAGGCG ACCATACACCAAGCAGTTCACATAATGTGGAGAGAAAGGCG < 41bp 0.812131459962799 0.498436714389291 0.18579039 0.053085357 prediction 0.624262919925597 Functional Loss - CLCA4 ENSG00000016602 CDS Human protein_coding chr1:87025958 chr1:87025960 stopgain 0.940 0 23 hm5C_associated_SNPs_52907 0 0 0 0 2 CLCA4 chr1:87026041 5'GT 87026041 Upstream 82bp
chr16 67201447 67201447 1 + G T UCEC 67201445 + 67201425 67201465 41 CCCCATCATCTCTGACATCCCAGAAGACTCTCCATCCCCTG CCCCATCATCTCTGACATCCCATAAGACTCTCCATCCCCTG < 41bp 0.812105977147413 0.485200008875941 0.3722976 0.026865572 prediction 0.624211954294826 Functional Loss - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67201445 chr16:67201447 stopgain 0.996 0 23 hm5C_associated_SNPs_52910 0 0 1 0 3 HSF4 chr16:67201364 3'AG 67201364 Downstream 84bp
chr16 67201447 67201447 1 + G T UCEC 67201445 + 67201425 67201465 41 CCCCATCATCTCTGACATCCCAGAAGACTCTCCATCCCCTG CCCCATCATCTCTGACATCCCATAAGACTCTCCATCCCCTG < 41bp 0.812105977147413 0.485200008875941 0.3722976 0.026865572 prediction 0.624211954294826 Functional Loss - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67201445 chr16:67201447 stopgain 0.996 0 23 hm5C_associated_SNPs_52910 0 0 1 0 3 HSF4 chr16:67201378 3'AG 67201378 Downstream 70bp
chr16 67201447 67201447 1 + G T UCEC 67201445 + 67201425 67201465 41 CCCCATCATCTCTGACATCCCAGAAGACTCTCCATCCCCTG CCCCATCATCTCTGACATCCCATAAGACTCTCCATCCCCTG < 41bp 0.812105977147413 0.485200008875941 0.3722976 0.026865572 prediction 0.624211954294826 Functional Loss - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67201445 chr16:67201447 stopgain 0.996 0 23 hm5C_associated_SNPs_52910 0 0 1 0 3 HSF4 chr16:67201502 5'GT 67201502 Upstream 56bp
chr8 56910944 56910944 1 + A C BLCA 56910940 + 56910920 56910960 41 GCATACATCGAGCGGAAGAACTACATTCACCGGGACCTGCG GCATACATCGAGCGGAAGAACTACCTTCACCGGGACCTGCG < 41bp 0.812104661729877 0.397094093711082 0.91822445 0.3778673 prediction 0.624209323459753 Functional Loss - LYN ENSG00000254087 CDS Human protein_coding chr8:56910940 chr8:56910944 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_52911 0 0 1 0 1 LYN chr8:56910905 3'AG 56910905 Downstream 40bp
chr14 24620821 24620821 1 + A T rs149481717 24620817 + 24620797 24620837 41 GCCAACGCCTAGAGCCCTTCCGCCAGCGCCTCTGGGACAGT GCCAACGCCTAGAGCCCTTCCGCCTGCGCCTCTGGGACAGT < 41bp 0.81209343930329 0.48717174274848 0.32214558 0.20064431 prediction 0.624186878606581 Functional Loss - RNF31 ENSG00000092098;ENSG00000259529 CDS Human other chr14:24620817 chr14:24620821 nonsynonymous SNV 0.986 1 25 hm5C_associated_SNPs_52912 0 0 1 0 1 RNF31 chr14:24620879 5'GT 24620879 Upstream 59bp
chr15 64737223 64737223 1 + G T READ 64737220 + 64737200 64737240 41 CACAGTTTCCAGACATCAGTCAAGAGTCTGATTCTCCATTT CACAGTTTCCAGACATCAGTCAATAGTCTGATTCTCCATTT < 41bp 0.812074542700046 0.468023361155819 0.219434 0.05316201 prediction 0.624149085400093 Functional Loss - TRIP4 ENSG00000103671 CDS Human protein_coding chr15:64737220 chr15:64737223 stopgain 1.000 1 24 hm5C_associated_SNPs_52916 0 0 0 0 2 TRIP4 chr15:64737205 3'AG 64737205 Downstream 19bp
chr15 64737223 64737223 1 + G T READ 64737220 + 64737200 64737240 41 CACAGTTTCCAGACATCAGTCAAGAGTCTGATTCTCCATTT CACAGTTTCCAGACATCAGTCAATAGTCTGATTCTCCATTT < 41bp 0.812074542700046 0.468023361155819 0.219434 0.05316201 prediction 0.624149085400093 Functional Loss - TRIP4 ENSG00000103671 CDS Human protein_coding chr15:64737220 chr15:64737223 stopgain 1.000 1 24 hm5C_associated_SNPs_52916 0 0 0 0 2 TRIP4 chr15:64737307 5'GT 64737307 Upstream 85bp
chr6 161143527 161143527 1 + G T HNSC 161143524 + 161143504 161143544 41 CACATCCTCCACCACCACCACAGGAAAGAAGTGTCAGTCTT CACATCCTCCACCACCACCACAGTAAAGAAGTGTCAGTCTT < 41bp 0.81206554232632 0.435425297369911 0.24874249 0.120878726 prediction 0.62413108465264 Functional Loss - PLG ENSG00000122194 CDS Human protein_coding chr6:161143524 chr6:161143527 nonsynonymous SNV 0.466 3 24 hm5C_associated_SNPs_52917 0 0 0 0 2 PLG chr6:161143440 3'AG 161143440 Downstream 88bp
chr6 161143527 161143527 1 + G T HNSC 161143524 + 161143504 161143544 41 CACATCCTCCACCACCACCACAGGAAAGAAGTGTCAGTCTT CACATCCTCCACCACCACCACAGTAAAGAAGTGTCAGTCTT < 41bp 0.81206554232632 0.435425297369911 0.24874249 0.120878726 prediction 0.62413108465264 Functional Loss - PLG ENSG00000122194 CDS Human protein_coding chr6:161143524 chr6:161143527 nonsynonymous SNV 0.466 3 24 hm5C_associated_SNPs_52917 0 0 0 0 2 PLG chr6:161143599 5'GT 161143599 Upstream 73bp
chr1 90473240 90473240 1 + A C LGG 90473236 + 90473216 90473256 41 GAGAGGAACGCCTGCTTATCCTGAAAGTACGTTTGGAAGCA GAGAGGAACGCCTGCTTATCCTGACAGTACGTTTGGAAGCA < 41bp 0.889375943143369 0.577323164169096 0.18369466 0.13290328 prediction 0.624105557948547 Functional Loss - ZNF326 ENSG00000162664 CDS Human protein_coding chr1:90473236 chr1:90473240 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_52919 0 0 1 0 2 ZNF326 chr1:90473171 3'AG 90473171 Downstream 70bp
chr1 90473240 90473240 1 + A C LGG 90473236 + 90473216 90473256 41 GAGAGGAACGCCTGCTTATCCTGAAAGTACGTTTGGAAGCA GAGAGGAACGCCTGCTTATCCTGACAGTACGTTTGGAAGCA < 41bp 0.889375943143369 0.577323164169096 0.18369466 0.13290328 prediction 0.624105557948547 Functional Loss - ZNF326 ENSG00000162664 CDS Human protein_coding chr1:90473236 chr1:90473240 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_52919 0 0 1 0 2 ZNF326 chr1:90473309 5'GT 90473309 Upstream 70bp
chr4 70921236 70921236 1 + G T COAD 70921233 + 70921213 70921253 41 AGGAAAAGCATCATTCACATCGAGAATTTCCATTTTATGGG AGGAAAAGCATCATTCACATCGATAATTTCCATTTTATGGG < 41bp 0.812050198330222 0.481106667779804 0.206653 0.13986534 prediction 0.624100396660443 Functional Loss - HTN1 ENSG00000126550 CDS Human protein_coding chr4:70921233 chr4:70921236 stopgain 0.001 0 24 hm5C_associated_SNPs_52920 0 0 0 0 2 HTN1 chr4:70921215 3'AG 70921215 Downstream 22bp
chr4 70921236 70921236 1 + G T COAD 70921233 + 70921213 70921253 41 AGGAAAAGCATCATTCACATCGAGAATTTCCATTTTATGGG AGGAAAAGCATCATTCACATCGATAATTTCCATTTTATGGG < 41bp 0.812050198330222 0.481106667779804 0.206653 0.13986534 prediction 0.624100396660443 Functional Loss - HTN1 ENSG00000126550 CDS Human protein_coding chr4:70921233 chr4:70921236 stopgain 0.001 0 24 hm5C_associated_SNPs_52920 0 0 0 0 2 HTN1 chr4:70921319 5'GT 70921319 Upstream 84bp
chr11 33083215 33083215 1 + G T UCEC 33083213 + 33083193 33083233 41 GGCTGAGCCCTGTTGCTGTCCAGAATTACGCTTACCTGAAG GGCTGAGCCCTGTTGCTGTCCATAATTACGCTTACCTGAAG < 41bp 0.827713262646588 0.515694913372591 0.25040603 0.05939603 prediction 0.624036698547995 Functional Loss - TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33083213 chr11:33083215 nonsynonymous SNV 0.373 1 23 hm5C_associated_SNPs_52924 0 0 0 0 1 TCP11L1 chr11:33083272 5'GT 33083272 Upstream 58bp
chr2 64839984 64839984 1 + G T rs6546090 64839981 + 64839961 64840001 41 TGACCATATTCTTTCAACTTCAGGAGCAACAGCACCTGGAG TGACCATATTCTTTCAACTTCAGTAGCAACAGCACCTGGAG < 41bp 0.818404530507779 0.506403962572121 0.91981006 0.5076754 prediction 0.624001135871316 Functional Loss - LOC339807 ENSG00000233694 ncRNA_exonic Human lincRNA chr2:64839981 chr2:64839984 . . 0 24 hm5C_associated_SNPs_52925 0 1 0 0 1 LOC339807 chr2:64839900 3'AG 64839900 Downstream 85bp
chr1 171753159 171753159 1 + G T BRCA 171753157 + 171753137 171753177 41 ACAGGTGGACAGGATGCTGGCTGAGGTTGGCCGTGTCCTGC ACAGGTGGACAGGATGCTGGCTTAGGTTGGCCGTGTCCTGC < 41bp 0.827407029113371 0.515408970352483 0.48272428 0.3884073 prediction 0.623996117521777 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171753157 chr1:171753159 stopgain 1.000 1 23 hm5C_associated_SNPs_52926 0 0 1 0 1 METTL13 chr1:171753179 5'GT 171753179 Upstream 21bp
chr2 95945716 95945716 1 + G T UCEC 95945713 + 95945693 95945733 41 GACCCCAGCCACCCAGAAGCCAAGGGCGAGGCTGGAGCCCG GACCCCAGCCACCCAGAAGCCAATGGCGAGGCTGGAGCCCG < 41bp 0.876415772899144 0.564440619310491 0.901821 0.44934607 prediction 0.623950307177306 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95945713 chr2:95945716 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_52927 0 0 0 0 1 PROM2 chr2:95945745 5'GT 95945745 Upstream 30bp
chr20 1224774 1224774 1 + A C rs17717241 1224770 + 1224750 1224790 41 AGGATGTGATTGGTGGATCTCAGCATAGCTCTCATGAGGAT AGGATGTGATTGGTGGATCTCAGCCTAGCTCTCATGAGGAT < 41bp 0.811965476196079 0.426978950770963 0.29847002 0.19123906 prediction 0.623930952392157 Functional Loss - RAD21L1 ENSG00000244588 CDS Human protein_coding chr20:1224770 chr20:1224774 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_52929 0 0 0 0 2 RAD21L1 chr20:1224690 3'AG 1224690 Downstream 85bp
chr20 1224774 1224774 1 + A C rs17717241 1224770 + 1224750 1224790 41 AGGATGTGATTGGTGGATCTCAGCATAGCTCTCATGAGGAT AGGATGTGATTGGTGGATCTCAGCCTAGCTCTCATGAGGAT < 41bp 0.811965476196079 0.426978950770963 0.29847002 0.19123906 prediction 0.623930952392157 Functional Loss - RAD21L1 ENSG00000244588 CDS Human protein_coding chr20:1224770 chr20:1224774 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_52929 0 0 0 0 2 RAD21L1 chr20:1224814 5'GT 1224814 Upstream 41bp
chr12 8925972 8925972 1 + G T UCEC 8925970 + 8925950 8925990 41 AAGGGAAGCAGCTAGCTATCCAGGTGTCTAATATCCTGGGG AAGGGAAGCAGCTAGCTATCCATGTGTCTAATATCCTGGGG < 41bp 0.811958956860207 0.498855543670204 0.9189295 0.38947397 prediction 0.623917913720414 Functional Loss - RIMKLB ENSG00000166532 CDS Human protein_coding chr12:8925970 chr12:8925972 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_52930 0 0 1 0 2 RIMKLB chr12:8925917 3'AG 8925917 Downstream 56bp
chr12 8925972 8925972 1 + G T UCEC 8925970 + 8925950 8925990 41 AAGGGAAGCAGCTAGCTATCCAGGTGTCTAATATCCTGGGG AAGGGAAGCAGCTAGCTATCCATGTGTCTAATATCCTGGGG < 41bp 0.811958956860207 0.498855543670204 0.9189295 0.38947397 prediction 0.623917913720414 Functional Loss - RIMKLB ENSG00000166532 CDS Human protein_coding chr12:8925970 chr12:8925972 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_52930 0 0 1 0 2 RIMKLB chr12:8926062 5'GT 8926062 Upstream 91bp
chr20 30371571 30371571 1 + G T UCEC 30371568 + 30371548 30371588 41 GAAGGTGGGCCCATCTTGCCCAAGAAACCACCTGTGAAACC GAAGGTGGGCCCATCTTGCCCAATAAACCACCTGTGAAACC < 41bp 0.811954451808597 0.437171868174324 0.24312237 0.07387063 prediction 0.623908903617193 Functional Loss - TPX2 ENSG00000088325 CDS Human protein_coding chr20:30371568 chr20:30371571 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52931 0 0 1 0 1 TPX2 chr20:30371508 3'AG 30371508 Downstream 64bp
chr3 119328423 119328423 1 + G T UCEC 119328421 + 119328401 119328441 41 AGGCCAGCTGGGACAGATCACAGGTAACATTCCTCCCTGCC AGGCCAGCTGGGACAGATCACATGTAACATTCCTCCCTGCC < 41bp 0.830922291423779 0.518969510370677 0.8639488 0.34161946 prediction 0.623905562106204 Functional Loss - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119328421 chr3:119328423 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_52932 0 0 0 0 1 PLA1A chr3:119328423 5'GT 119328423 Upstream 1bp
chr21 43852292 43852292 1 + G T UCEC 43852290 + 43852270 43852310 41 TCTTCGGGAAGGCATGGCTGCAGCAATGCTCCACTCCTGAT TCTTCGGGAAGGCATGGCTGCATCAATGCTCCACTCCTGAT < 41bp 0.811948577511328 0.49226119182448 0.269637 0.16903952 prediction 0.623897155022656 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43852290 chr21:43852292 nonsynonymous SNV 0.853 0 23 hm5C_associated_SNPs_52933 0 0 0 0 2 UBASH3A chr21:43852212 3'AG 43852212 Downstream 81bp
chr21 43852292 43852292 1 + G T UCEC 43852290 + 43852270 43852310 41 TCTTCGGGAAGGCATGGCTGCAGCAATGCTCCACTCCTGAT TCTTCGGGAAGGCATGGCTGCATCAATGCTCCACTCCTGAT < 41bp 0.811948577511328 0.49226119182448 0.269637 0.16903952 prediction 0.623897155022656 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43852290 chr21:43852292 nonsynonymous SNV 0.853 0 23 hm5C_associated_SNPs_52933 0 0 0 0 2 UBASH3A chr21:43852311 5'GT 43852311 Upstream 20bp
chr11 61253281 61253281 1 + G T LUAD 61253279 + 61253259 61253299 41 TTTCTTTTGCAGATTTCTTGCAGAAGAAATCGATCGGCGCA TTTCTTTTGCAGATTTCTTGCATAAGAAATCGATCGGCGCA < 41bp 0.826431951965013 0.514493687395252 0.90167415 0.27545142 prediction 0.623876529139521 Functional Loss - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61253279 chr11:61253281 nonsynonymous SNV 0.905 2 23 hm5C_associated_SNPs_52935 0 0 0 0 1 PPP1R32 chr11:61253271 3'AG 61253271 Downstream 11bp
chr14 24529434 24529434 1 + G T COAD 24529432 + 24529412 24529452 41 AGGAGCAGGCCTTCAGGTTGCAGCAGGGCCTGGTGACCAGC AGGAGCAGGCCTTCAGGTTGCATCAGGGCCTGGTGACCAGC < 41bp 0.821602938433326 0.509690805056439 0.43251336 0.38404012 prediction 0.623824266753773 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24529432 chr14:24529434 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_52939 0 0 0 0 2 CARMIL3 chr14:24529366 3'AG 24529366 Downstream 69bp
chr14 24529434 24529434 1 + G T COAD 24529432 + 24529412 24529452 41 AGGAGCAGGCCTTCAGGTTGCAGCAGGGCCTGGTGACCAGC AGGAGCAGGCCTTCAGGTTGCATCAGGGCCTGGTGACCAGC < 41bp 0.821602938433326 0.509690805056439 0.43251336 0.38404012 prediction 0.623824266753773 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24529432 chr14:24529434 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_52939 0 0 0 0 2 CARMIL3 chr14:24529464 5'GT 24529464 Upstream 31bp
chr3 183887980 183887980 1 + G T LUAD 183887978 + 183887958 183887998 41 GAGCTGGGCTACAGCTACGGCGGGGGCAGCGCCAGCAGTCA GAGCTGGGCTACAGCTACGGCGTGGGCAGCGCCAGCAGTCA < 41bp 0.827240403050895 0.515330416324834 0.88961715 0.17886665 prediction 0.623819973452121 Functional Loss - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183887978 chr3:183887980 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_52941 0 0 1 0 1 DVL3 chr3:183888009 5'GT 183888009 Upstream 30bp
chr9 131285000 131285000 1 + G T THCA 131284997 + 131284977 131285017 41 GAGAGGAAGGTGCAAGCCCTCTCGGAGATGGCATCTGAACA GAGAGGAAGGTGCAAGCCCTCTCTGAGATGGCATCTGAACA < 41bp 0.811903245804436 0.453850271179177 0.32934445 0.2923317 prediction 0.623806491608871 Functional Loss - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131284997 chr9:131285000 synonymous SNV . 0 24 hm5C_associated_SNPs_52942 0 0 1 0 2 GLE1 chr9:131284947 3'AG 131284947 Downstream 54bp
chr9 131285000 131285000 1 + G T THCA 131284997 + 131284977 131285017 41 GAGAGGAAGGTGCAAGCCCTCTCGGAGATGGCATCTGAACA GAGAGGAAGGTGCAAGCCCTCTCTGAGATGGCATCTGAACA < 41bp 0.811903245804436 0.453850271179177 0.32934445 0.2923317 prediction 0.623806491608871 Functional Loss - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131284997 chr9:131285000 synonymous SNV . 0 24 hm5C_associated_SNPs_52942 0 0 1 0 2 GLE1 chr9:131285095 5'GT 131285095 Upstream 96bp
chr16 27448852 27448852 1 + A T LIHC 27448848 + 27448828 27448868 41 CTGAAGGACGAGGCCACCTCCTGCAGCCTCCACAGGTCGGC CTGAAGGACGAGGCCACCTCCTGCTGCCTCCACAGGTCGGC < 41bp 0.824225401779397 0.512347370242075 0.24825883 0.11316925 prediction 0.623756063074642 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27448848 chr16:27448852 nonsynonymous SNV 0.965 4 25 hm5C_associated_SNPs_52945 0 0 0 0 1 IL21R chr16:27448809 3'AG 27448809 Downstream 44bp
chr11 63719960 63719960 1 + G T LUSC 63719957 + 63719937 63719977 41 GACCGAGCCTGGTACCTCATCGCGTGGGAAAACAGCTCCGT GACCGAGCCTGGTACCTCATCGCTTGGGAAAACAGCTCCGT < 41bp 0.811876267788845 0.430353203509855 0.56567657 0.13541627 prediction 0.623752535577691 Functional Loss - NAA40 ENSG00000110583 CDS Human protein_coding chr11:63719957 chr11:63719960 synonymous SNV . 0 24 hm5C_associated_SNPs_52946 0 0 1 0 2 NAA40 chr11:63719879 3'AG 63719879 Downstream 82bp
chr11 63719960 63719960 1 + G T LUSC 63719957 + 63719937 63719977 41 GACCGAGCCTGGTACCTCATCGCGTGGGAAAACAGCTCCGT GACCGAGCCTGGTACCTCATCGCTTGGGAAAACAGCTCCGT < 41bp 0.811876267788845 0.430353203509855 0.56567657 0.13541627 prediction 0.623752535577691 Functional Loss - NAA40 ENSG00000110583 CDS Human protein_coding chr11:63719957 chr11:63719960 synonymous SNV . 0 24 hm5C_associated_SNPs_52946 0 0 1 0 2 NAA40 chr11:63720037 5'GT 63720037 Upstream 78bp
chr19 36164441 36164441 1 + G T UCEC 36164438 + 36164418 36164458 41 ACCCGCCTCTGGGACCGCGTCATGATTGAGGTGGGCGGGGT ACCCGCCTCTGGGACCGCGTCATTATTGAGGTGGGCGGGGT < 41bp 0.868983878064706 0.557124987480561 0.38256678 0.14809564 prediction 0.623717781168291 Functional Loss - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36164438 chr19:36164441 nonsynonymous SNV 0.989 5 24 hm5C_associated_SNPs_52947 0 0 0 0 1 UPK1A chr19:36164447 5'GT 36164447 Upstream 7bp
chr5 175793485 175793485 1 + G T LUAD 175793482 + 175793462 175793502 41 CAGGCAAGAGCACGTTCCTGCGCGTGTTGTCGGGGAAGCCA CAGGCAAGAGCACGTTCCTGCGCTTGTTGTCGGGGAAGCCA < 41bp 0.811845010021837 0.437269060482875 0.1826947 0.08692446 prediction 0.623690020043673 Functional Loss - ARL10 ENSG00000175414 CDS Human protein_coding chr5:175793482 chr5:175793485 nonsynonymous SNV 0.799 0 24 hm5C_associated_SNPs_52949 0 0 0 0 1 ARL10 chr5:175793584 5'GT 175793584 Upstream 100bp
chr2 206580979 206580979 1 + G T LUAD 206580977 + 206580957 206580997 41 GCAGACCTCCTGGGCAAACACTGTGGGAACATCGCCCCGCC GCAGACCTCCTGGGCAAACACTTTGGGAACATCGCCCCGCC < 41bp 0.821139311006254 0.509310801265291 0.8246975 0.28265846 prediction 0.623657019481926 Functional Loss - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206580977 chr2:206580979 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52951 0 0 1 0 1 NRP2 chr2:206580917 3'AG 206580917 Downstream 63bp
chr4 141300287 141300287 1 + G T COAD 141300284 + 141300264 141300304 41 TCTTATTGTAGACCATTCCTCAAGAATTTTGTATCCAAGGC TCTTATTGTAGACCATTCCTCAATAATTTTGTATCCAAGGC < 41bp 0.811811201358169 0.471932844423115 0.28140092 0.11953077 prediction 0.623622402716339 Functional Loss - SCOC ENSG00000153130 CDS Human protein_coding chr4:141300284 chr4:141300287 nonsynonymous SNV 0.018 2 24 hm5C_associated_SNPs_52953 0 0 1 0 2 SCOC chr4:141300275 3'AG 141300275 Downstream 13bp
chr4 141300287 141300287 1 + G T COAD 141300284 + 141300264 141300304 41 TCTTATTGTAGACCATTCCTCAAGAATTTTGTATCCAAGGC TCTTATTGTAGACCATTCCTCAATAATTTTGTATCCAAGGC < 41bp 0.811811201358169 0.471932844423115 0.28140092 0.11953077 prediction 0.623622402716339 Functional Loss - SCOC ENSG00000153130 CDS Human protein_coding chr4:141300284 chr4:141300287 nonsynonymous SNV 0.018 2 24 hm5C_associated_SNPs_52953 0 0 1 0 2 SCOC chr4:141300346 5'GT 141300346 Upstream 60bp
chr9 100405549 100405549 1 + G T UCEC 100405546 + 100405526 100405566 41 TTAGTTGGACTACTGAATGCCAGGAATTACAATTTTGGTGG TTAGTTGGACTACTGAATGCCAGTAATTACAATTTTGGTGG < 41bp 0.811807750461877 0.460158769830803 0.47955495 0.069818646 prediction 0.623615500923754 Functional Loss - NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100405546 chr9:100405549 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_52954 0 0 1 0 2 NCBP1 chr9:100405486 3'AG 100405486 Downstream 64bp
chr9 100405549 100405549 1 + G T UCEC 100405546 + 100405526 100405566 41 TTAGTTGGACTACTGAATGCCAGGAATTACAATTTTGGTGG TTAGTTGGACTACTGAATGCCAGTAATTACAATTTTGGTGG < 41bp 0.811807750461877 0.460158769830803 0.47955495 0.069818646 prediction 0.623615500923754 Functional Loss - NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100405546 chr9:100405549 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_52954 0 0 1 0 2 NCBP1 chr9:100405642 5'GT 100405642 Upstream 94bp
chr18 72238438 72238438 1 + G T HNSC 72238436 + 72238416 72238456 41 TGCAGGTGAAATGCAGAGACCAGGATTTTCACTCAGGAACC TGCAGGTGAAATGCAGAGACCATGATTTTCACTCAGGAACC < 41bp 0.811753419080227 0.493260117098434 0.70009875 0.0642817 prediction 0.623506838160453 Functional Loss - CNDP1 ENSG00000150656 CDS Human protein_coding chr18:72238436 chr18:72238438 nonsynonymous SNV 0.976 4 23 hm5C_associated_SNPs_52959 0 0 0 0 2 CNDP1 chr18:72238421 3'AG 72238421 Downstream 18bp
chr18 72238438 72238438 1 + G T HNSC 72238436 + 72238416 72238456 41 TGCAGGTGAAATGCAGAGACCAGGATTTTCACTCAGGAACC TGCAGGTGAAATGCAGAGACCATGATTTTCACTCAGGAACC < 41bp 0.811753419080227 0.493260117098434 0.70009875 0.0642817 prediction 0.623506838160453 Functional Loss - CNDP1 ENSG00000150656 CDS Human protein_coding chr18:72238436 chr18:72238438 nonsynonymous SNV 0.976 4 23 hm5C_associated_SNPs_52959 0 0 0 0 2 CNDP1 chr18:72238505 5'GT 72238505 Upstream 68bp
chr14 54989231 54989231 1 + G T UCEC 54989228 + 54989208 54989248 41 AGAAGAGACCCAGTTCAGCACAAGAGTTTTCAAAAAGCAAA AGAAGAGACCCAGTTCAGCACAATAGTTTTCAAAAAGCAAA < 41bp 0.811745840333473 0.465245467015734 0.36856127 0.23595726 prediction 0.623491680666945 Functional Loss - CGRRF1 ENSG00000100532 CDS Human protein_coding chr14:54989228 chr14:54989231 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_52962 0 0 0 1 2 CGRRF1 chr14:54989172 3'AG 54989172 Downstream 60bp
chr14 54989231 54989231 1 + G T UCEC 54989228 + 54989208 54989248 41 AGAAGAGACCCAGTTCAGCACAAGAGTTTTCAAAAAGCAAA AGAAGAGACCCAGTTCAGCACAATAGTTTTCAAAAAGCAAA < 41bp 0.811745840333473 0.465245467015734 0.36856127 0.23595726 prediction 0.623491680666945 Functional Loss - CGRRF1 ENSG00000100532 CDS Human protein_coding chr14:54989228 chr14:54989231 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_52962 0 0 0 1 2 CGRRF1 chr14:54989311 5'GT 54989311 Upstream 81bp
chr19 50926145 50926145 1 + G T LUSC 50926143 + 50926123 50926163 41 CCCCTATGAAGCCTTCGACCCGGCAGCAGCCGCTTTTAGCC CCCCTATGAAGCCTTCGACCCGTCAGCAGCCGCTTTTAGCC < 41bp 0.81611479531059 0.50439347333595 0.82106006 0.08163947 prediction 0.62344264394928 Functional Loss - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50926143 chr19:50926145 nonsynonymous SNV 0.010 0 23 hm5C_associated_SNPs_52963 0 0 0 0 1 SPIB chr19:50926080 3'AG 50926080 Downstream 66bp
chrX 129054466 129054466 1 + G T SARC 129054463 + 129054443 129054483 41 GTCGTGAAGAAAGGAAAGGCCAAGAAAGCCCTAAAAGAGTT GTCGTGAAGAAAGGAAAGGCCAATAAAGCCCTAAAAGAGTT < 41bp 0.811719862277995 0.448332570596362 0.14029315 0.11213505 prediction 0.62343972455599 Functional Loss - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129054463 chrX:129054466 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_52964 0 0 0 0 2 UTP14A chrX:129054433 3'AG 129054433 Downstream 34bp
chrX 129054466 129054466 1 + G T SARC 129054463 + 129054443 129054483 41 GTCGTGAAGAAAGGAAAGGCCAAGAAAGCCCTAAAAGAGTT GTCGTGAAGAAAGGAAAGGCCAATAAAGCCCTAAAAGAGTT < 41bp 0.811719862277995 0.448332570596362 0.14029315 0.11213505 prediction 0.62343972455599 Functional Loss - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129054463 chrX:129054466 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_52964 0 0 0 0 2 UTP14A chrX:129054556 5'GT 129054556 Upstream 91bp
chr1 203276261 203276261 1 + A C DLBC 203276257 + 203276237 203276277 41 TACAAACACCACTGGTTTCCCGAAAAGCCGTCCAAGGGCTC TACAAACACCACTGGTTTCCCGAACAGCCGTCCAAGGGCTC < 41bp 0.811717213971854 0.434414739987414 0.13181484 0.09700796 prediction 0.623434427943707 Functional Loss - BTG2 ENSG00000159388 CDS Human protein_coding chr1:203276257 chr1:203276261 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_52965 0 0 1 0 1 BTG2 chr1:203276232 3'AG 203276232 Downstream 30bp
chr19 14161638 14161638 1 + G T UCEC 14161636 + 14161616 14161656 41 TCCCTGTGAGCTGTGGGTGACAGCATCTACCATCGCTGGAC TCCCTGTGAGCTGTGGGTGACATCATCTACCATCGCTGGAC < 41bp 0.831096034628407 0.519383556280236 0.17958596 0.122572094 prediction 0.623424956696341 Functional Loss - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14161636 chr19:14161638 nonsynonymous SNV 0.246 2 23 hm5C_associated_SNPs_52966 0 0 0 0 2 IL27RA chr19:14161570 3'AG 14161570 Downstream 69bp
chr19 14161638 14161638 1 + G T UCEC 14161636 + 14161616 14161656 41 TCCCTGTGAGCTGTGGGTGACAGCATCTACCATCGCTGGAC TCCCTGTGAGCTGTGGGTGACATCATCTACCATCGCTGGAC < 41bp 0.831096034628407 0.519383556280236 0.17958596 0.122572094 prediction 0.623424956696341 Functional Loss - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14161636 chr19:14161638 nonsynonymous SNV 0.246 2 23 hm5C_associated_SNPs_52966 0 0 0 0 2 IL27RA chr19:14161695 5'GT 14161695 Upstream 58bp
chr10 127442317 127442317 1 + G T UCEC 127442314 + 127442294 127442334 41 ATGCTTCTCCTAGTCTCAATCGAGAAGAAGTGATGAAACTC ATGCTTCTCCTAGTCTCAATCGATAAGAAGTGATGAAACTC < 41bp 0.811655781898046 0.455633258488737 0.9246839 0.23150325 prediction 0.623311563796092 Functional Loss - EDRF1 ENSG00000107938 CDS Human protein_coding chr10:127442314 chr10:127442317 stopgain 0.998 1 24 hm5C_associated_SNPs_52971 0 0 1 0 2 EDRF1 chr10:127442263 3'AG 127442263 Downstream 55bp
chr10 127442317 127442317 1 + G T UCEC 127442314 + 127442294 127442334 41 ATGCTTCTCCTAGTCTCAATCGAGAAGAAGTGATGAAACTC ATGCTTCTCCTAGTCTCAATCGATAAGAAGTGATGAAACTC < 41bp 0.811655781898046 0.455633258488737 0.9246839 0.23150325 prediction 0.623311563796092 Functional Loss - EDRF1 ENSG00000107938 CDS Human protein_coding chr10:127442314 chr10:127442317 stopgain 0.998 1 24 hm5C_associated_SNPs_52971 0 0 1 0 2 EDRF1 chr10:127442414 5'GT 127442414 Upstream 98bp
chr10 89504793 89504793 1 + G T LIHC 89504790 + 89504770 89504810 41 CTGCAGGTCCCGGATGATTGCGGGTGCCAATTTCTACATTG CTGCAGGTCCCGGATGATTGCGGTTGCCAATTTCTACATTG < 41bp 0.871253461166195 0.559615060263586 0.88054514 0.2753302 prediction 0.623276801805217 Functional Loss - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89504790 chr10:89504793 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_52973 0 0 0 0 1 PAPSS2 chr10:89504759 3'AG 89504759 Downstream 35bp
chr19 4157010 4157010 1 + G T LUSC 4157007 + 4156987 4157027 41 CCCAGCAGGTCCTGCCAAACCCCGACTCTGACGACTTCCTC CCCAGCAGGTCCTGCCAAACCCCTACTCTGACGACTTCCTC < 41bp 0.811633306035103 0.443030332067343 0.13760045 0.11910632 prediction 0.623266612070206 Functional Loss - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4157007 chr19:4157010 nonsynonymous SNV 0.003 4 24 hm5C_associated_SNPs_52974 0 0 0 0 2 CREB3L3 chr19:4156992 3'AG 4156992 Downstream 19bp
chr19 4157010 4157010 1 + G T LUSC 4157007 + 4156987 4157027 41 CCCAGCAGGTCCTGCCAAACCCCGACTCTGACGACTTCCTC CCCAGCAGGTCCTGCCAAACCCCTACTCTGACGACTTCCTC < 41bp 0.811633306035103 0.443030332067343 0.13760045 0.11910632 prediction 0.623266612070206 Functional Loss - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4157007 chr19:4157010 nonsynonymous SNV 0.003 4 24 hm5C_associated_SNPs_52974 0 0 0 0 2 CREB3L3 chr19:4156995 3'AG 4156995 Downstream 16bp
chrX 48542781 48542781 1 + A C UCEC 48542777 + 48542757 48542797 41 GCTTCGTGAAGGATAACCCCCAGAAGTCCTACTTCATCCGC GCTTCGTGAAGGATAACCCCCAGACGTCCTACTTCATCCGC < 41bp 0.811600297855522 0.424338878840419 0.869035 0.8069016 prediction 0.623200595711044 Functional Loss - WAS ENSG00000015285 CDS Human protein_coding chrX:48542777 chrX:48542781 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_52975 0 0 0 0 1 WAS chrX:48542812 5'GT 48542812 Upstream 32bp
chrX 48542779 48542779 1 + G T UCS 48542777 + 48542757 48542797 41 GCTTCGTGAAGGATAACCCCCAGAAGTCCTACTTCATCCGC GCTTCGTGAAGGATAACCCCCATAAGTCCTACTTCATCCGC < 41bp 0.811600297855522 0.487506134740061 0.869035 0.31924355 prediction 0.623200595711044 Functional Loss - WAS ENSG00000015285 CDS Human protein_coding chrX:48542777 chrX:48542779 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52976 0 0 0 0 1 WAS chrX:48542812 5'GT 48542812 Upstream 34bp
chr2 220044485 220044485 1 + G T OV 220044483 + 220044463 220044503 41 CCAGAGGAGCCACACTCTGACAGGTGAGTACAGGCCACCTC CCAGAGGAGCCACACTCTGACATGTGAGTACAGGCCACCTC < 41bp 0.838870582982589 0.527274656205857 0.8917733 0.26246142 prediction 0.623191853553464 Functional Loss - RETREG2 ENSG00000144567 CDS Human protein_coding chr2:220044483 chr2:220044485 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_52979 0 0 1 0 2 RETREG2 chr2:220044455 3'AG 220044455 Downstream 31bp
chr2 220044485 220044485 1 + G T OV 220044483 + 220044463 220044503 41 CCAGAGGAGCCACACTCTGACAGGTGAGTACAGGCCACCTC CCAGAGGAGCCACACTCTGACATGTGAGTACAGGCCACCTC < 41bp 0.838870582982589 0.527274656205857 0.8917733 0.26246142 prediction 0.623191853553464 Functional Loss - RETREG2 ENSG00000144567 CDS Human protein_coding chr2:220044483 chr2:220044485 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_52979 0 0 1 0 2 RETREG2 chr2:220044485 5'GT 220044485 Upstream 1bp
chr12 117465839 117465839 1 + G T LUSC 117465837 + 117465817 117465857 41 TTTGTGCTCTTTCTAGACACCGGGGGCTGATCCGCGCCTAT TTTGTGCTCTTTCTAGACACCGTGGGCTGATCCGCGCCTAT < 41bp 0.822748308010872 0.511157288592893 0.93286216 0.77103007 prediction 0.623182038835958 Functional Loss - FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117465837 chr12:117465839 synonymous SNV . 0 23 hm5C_associated_SNPs_52981 0 0 0 0 1 FBXW8 chr12:117465833 3'AG 117465833 Downstream 7bp
chr4 113571678 113571678 1 + G T UCEC 113571675 + 113571655 113571695 41 AATGCAACAGGACCACAGTTCGTGAGTGGAGTGATTGTGAA AATGCAACAGGACCACAGTTCGTTAGTGGAGTGATTGTGAA < 41bp 0.865190747307142 0.553622858939092 0.25173566 0.030671567 prediction 0.6231357767361 Functional Loss - LARP7 ENSG00000174720 CDS Human protein_coding chr4:113571675 chr4:113571678 synonymous SNV . 0 24 hm5C_associated_SNPs_52984 0 0 1 0 2 LARP7 chr4:113571617 3'AG 113571617 Downstream 62bp
chr4 113571678 113571678 1 + G T UCEC 113571675 + 113571655 113571695 41 AATGCAACAGGACCACAGTTCGTGAGTGGAGTGATTGTGAA AATGCAACAGGACCACAGTTCGTTAGTGGAGTGATTGTGAA < 41bp 0.865190747307142 0.553622858939092 0.25173566 0.030671567 prediction 0.6231357767361 Functional Loss - LARP7 ENSG00000174720 CDS Human protein_coding chr4:113571675 chr4:113571678 synonymous SNV . 0 24 hm5C_associated_SNPs_52984 0 0 1 0 2 LARP7 chr4:113571738 5'GT 113571738 Upstream 61bp
chr19 4317277 4317277 1 + G T UCEC 4317275 + 4317255 4317295 41 GCCGGTGACTCTGGAGACACCAGGTGACTGGATTCCACCCT GCCGGTGACTCTGGAGACACCATGTGACTGGATTCCACCCT < 41bp 0.820524676923304 0.508963850235525 0.8901211 0.13944867 prediction 0.623121653375558 Functional Loss - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4317275 chr19:4317277 nonsynonymous SNV 0.969 2 23 hm5C_associated_SNPs_52985 0 0 0 0 2 FSD1 chr19:4317179 3'AG 4317179 Downstream 99bp
chr19 4317277 4317277 1 + G T UCEC 4317275 + 4317255 4317295 41 GCCGGTGACTCTGGAGACACCAGGTGACTGGATTCCACCCT GCCGGTGACTCTGGAGACACCATGTGACTGGATTCCACCCT < 41bp 0.820524676923304 0.508963850235525 0.8901211 0.13944867 prediction 0.623121653375558 Functional Loss - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4317275 chr19:4317277 nonsynonymous SNV 0.969 2 23 hm5C_associated_SNPs_52985 0 0 0 0 2 FSD1 chr19:4317277 5'GT 4317277 Upstream 1bp
chr8 1948497 1948497 1 + A C rs189587040 1948493 + 1948473 1948513 41 CGCGGAAACACCTGATATCCCAGCAAAGGAAGCTGCAGAGG CGCGGAAACACCTGATATCCCAGCCAAGGAAGCTGCAGAGG < 41bp 0.811549991247022 0.432945120145293 0.7476772 0.5378456 prediction 0.623099982494044 Functional Loss - KBTBD11 ENSG00000176595 UTR5 Human protein_coding chr8:1948493 chr8:1948497 . . 0 25 hm5C_associated_SNPs_52986 0 0 0 0 1 KBTBD11 chr8:1948451 3'AG 1948451 Downstream 47bp
chr10 26727348 26727348 1 + A C rs563762045 26727344 + 26727324 26727364 41 GGCTGCAAAATGGTTCCATTCGCCAGGAGACGCTCCTGAGA GGCTGCAAAATGGTTCCATTCGCCCGGAGACGCTCCTGAGA < 41bp 0.811546031267591 0.469425240371549 0.33009964 0.14893803 prediction 0.623092062535181 Functional Loss - APBB1IP ENSG00000077420 UTR5 Human protein_coding chr10:26727344 chr10:26727348 . . 0 25 hm5C_associated_SNPs_52988 0 0 0 0 1 APBB1IP chr10:26727384 5'GT 26727384 Upstream 37bp
chr22 21288098 21288098 1 + G T CESC 21288096 + 21288076 21288116 41 CCCACCAATGGGATCTGTCTCAGCACCCAACCTGCCTACAG CCCACCAATGGGATCTGTCTCATCACCCAACCTGCCTACAG < 41bp 0.813691633570855 0.502148704048393 0.8874116 0.22711426 prediction 0.623085859044926 Functional Loss - CRKL ENSG00000099942 CDS Human protein_coding chr22:21288096 chr22:21288098 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_52989 0 0 1 0 1 CRKL chr22:21288067 3'AG 21288067 Downstream 32bp
chr4 110481517 110481517 1 + G T rs573198533 110481515 + 110481495 110481535 41 TGCTCCAGAGGGGCCTCTGGCCGTGGCGCACGCGGCTGCTG TGCTCCAGAGGGGCCTCTGGCCTTGGCGCACGCGGCTGCTG < 41bp 0.818870582989414 0.507364222494068 0.5810703 0.12761128 prediction 0.623012720990691 Functional Loss - MCUB ENSG00000005059 CDS Human protein_coding chr4:110481515 chr4:110481517 synonymous SNV . 0 23 hm5C_associated_SNPs_52994 0 0 1 0 1 MCUB chr4:110481592 5'GT 110481592 Upstream 76bp
chr1 231678318 231678318 1 + G T BLCA 231678316 + 231678296 231678336 41 CCAGGTAGCCCAAGAGCTATCAGGGGAAGATATGCATCAGT CCAGGTAGCCCAAGAGCTATCATGGGAAGATATGCATCAGT < 41bp 0.813067927081491 0.501564118733181 0.9473204 0.90187085 prediction 0.623007616696619 Functional Loss - TSNAX ENSG00000116918;ENSG00000270106 CDS Human other chr1:231678316 chr1:231678318 nonsynonymous SNV 0.517 4 23 hm5C_associated_SNPs_52995 0 0 1 1 2 TSNAX chr1:231678227 3'AG 231678227 Downstream 92bp
chr1 231678318 231678318 1 + G T BLCA 231678316 + 231678296 231678336 41 CCAGGTAGCCCAAGAGCTATCAGGGGAAGATATGCATCAGT CCAGGTAGCCCAAGAGCTATCATGGGAAGATATGCATCAGT < 41bp 0.813067927081491 0.501564118733181 0.9473204 0.90187085 prediction 0.623007616696619 Functional Loss - TSNAX ENSG00000116918;ENSG00000270106 CDS Human other chr1:231678316 chr1:231678318 nonsynonymous SNV 0.517 4 23 hm5C_associated_SNPs_52995 0 0 1 1 2 TSNAX chr1:231678357 5'GT 231678357 Upstream 40bp
chr11 64087315 64087315 1 + G T STAD 64087312 + 64087292 64087332 41 GGGTGTGCTGTTTGGAGTTCCTGGGGCCTTCACCCCTGGAT GGGTGTGCTGTTTGGAGTTCCTGTGGCCTTCACCCCTGGAT < 41bp 0.811476983449757 0.437345174590728 0.90733796 0.18938795 prediction 0.622953966899513 Functional Loss - PRDX5 ENSG00000126432 CDS Human protein_coding chr11:64087312 chr11:64087315 nonsynonymous SNV 0.938 4 24 hm5C_associated_SNPs_52996 0 0 1 1 1 PRDX5 chr11:64087340 5'GT 64087340 Upstream 26bp
chr5 71015731 71015731 1 + A C UCEC 71015727 + 71015707 71015747 41 ATCGAAGCGCTGCAAGAAGTCTTGAAGAAGCTCAAGAGTAA ATCGAAGCGCTGCAAGAAGTCTTGCAGAAGCTCAAGAGTAA < 41bp 0.811466983539195 0.424007110328963 0.16354203 0.22638696 prediction 0.62293396707839 Functional Loss - CARTPT ENSG00000164326 CDS Human protein_coding chr5:71015727 chr5:71015731 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_52999 0 0 0 0 2 CARTPT chr5:71015707 3'AG 71015707 Downstream 25bp
chr5 71015731 71015731 1 + A C UCEC 71015727 + 71015707 71015747 41 ATCGAAGCGCTGCAAGAAGTCTTGAAGAAGCTCAAGAGTAA ATCGAAGCGCTGCAAGAAGTCTTGCAGAAGCTCAAGAGTAA < 41bp 0.811466983539195 0.424007110328963 0.16354203 0.22638696 prediction 0.62293396707839 Functional Loss - CARTPT ENSG00000164326 CDS Human protein_coding chr5:71015727 chr5:71015731 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_52999 0 0 0 0 2 CARTPT chr5:71015790 5'GT 71015790 Upstream 60bp
chr7 98955975 98955975 1 + G T OV 98955973 + 98955953 98955993 41 TTGTGTTCAGGGTCTCGACTCTGAAGACAGAGTTCCTGCCG TTGTGTTCAGGGTCTCGACTCTTAAGACAGAGTTCCTGCCG < 41bp 0.811442397215148 0.498227762773501 0.032960087 0.010522306 prediction 0.622884794430295 Functional Loss - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98955973 chr7:98955975 synonymous SNV . 0 23 hm5C_associated_SNPs_53001 0 0 1 1 1 ARPC1A chr7:98956038 5'GT 98956038 Upstream 64bp
chr19 53077370 53077370 1 + G T HNSC 53077368 + 53077348 53077388 41 TGGTACGTGAGGAAAAAACACGGAAGAGGAAGAGGAAAGCA TGGTACGTGAGGAAAAAACACGTAAGAGGAAGAGGAAAGCA < 41bp 0.811871248328688 0.500445689538449 0.16003093 0.13301769 prediction 0.622851117580478 Functional Loss - ZNF701 ENSG00000167562 CDS Human protein_coding chr19:53077368 chr19:53077370 synonymous SNV . 0 23 hm5C_associated_SNPs_53004 0 0 0 0 2 ZNF701 chr19:53077330 3'AG 53077330 Downstream 41bp
chr19 53077370 53077370 1 + G T HNSC 53077368 + 53077348 53077388 41 TGGTACGTGAGGAAAAAACACGGAAGAGGAAGAGGAAAGCA TGGTACGTGAGGAAAAAACACGTAAGAGGAAGAGGAAAGCA < 41bp 0.811871248328688 0.500445689538449 0.16003093 0.13301769 prediction 0.622851117580478 Functional Loss - ZNF701 ENSG00000167562 CDS Human protein_coding chr19:53077368 chr19:53077370 synonymous SNV . 0 23 hm5C_associated_SNPs_53004 0 0 0 0 2 ZNF701 chr19:53077415 5'GT 53077415 Upstream 46bp
chr19 13869957 13869957 1 + G T HNSC 13869955 + 13869935 13869975 41 TGGAGACGGACGCCATGTTCCGGCTGGAGCATGGCGAGGCC TGGAGACGGACGCCATGTTCCGTCTGGAGCATGGCGAGGCC < 41bp 0.822921651836252 0.511527989026856 0.6265113 0.25379023 prediction 0.622787325618792 Functional Loss - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13869955 chr19:13869957 synonymous SNV . 0 23 hm5C_associated_SNPs_53006 0 0 1 0 1 CCDC130 chr19:13869914 3'AG 13869914 Downstream 44bp
chr5 53815360 53815360 1 + G T UCEC 53815358 + 53815338 53815378 41 TGGACCTATTAGCGCTGTATCAGGGGCATCTGGCTAACTTC TGGACCTATTAGCGCTGTATCATGGGCATCTGGCTAACTTC < 41bp 0.822417047967627 0.511029887573632 0.96891665 0.9280635 prediction 0.622774320787989 Functional Loss - SNX18 ENSG00000178996 CDS Human protein_coding chr5:53815358 chr5:53815360 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_53009 0 0 1 0 1 SNX18 chr5:53815403 5'GT 53815403 Upstream 44bp
chr19 11916852 11916852 1 + G T UCEC 11916849 + 11916829 11916869 41 GTTCCGGAAGACATGCTGAACAAGAAAACTCTTCCTGGAGT GTTCCGGAAGACATGCTGAACAATAAAACTCTTCCTGGAGT < 41bp 0.846230306768928 0.534854600276539 0.49095368 0.80695796 prediction 0.622751412984778 Functional Loss - ZNF491 ENSG00000177599 CDS Human protein_coding chr19:11916849 chr19:11916852 nonsynonymous SNV 0.015 1 24 hm5C_associated_SNPs_53010 0 0 0 0 1 ZNF491 chr19:11916762 3'AG 11916762 Downstream 91bp
chr20 3725632 3725632 1 + G T OV 3725630 + 3725610 3725650 41 ACTCCGGAGGGCGCCTTCCACAGCTTTGGCTACACCGCCCG ACTCCGGAGGGCGCCTTCCACATCTTTGGCTACACCGCCCG < 41bp 0.811354126054612 0.490159492255956 0.5433412 0.34807405 prediction 0.622708252109224 Functional Loss - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3725630 chr20:3725632 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_53011 0 0 0 0 1 HSPA12B chr20:3725549 3'AG 3725549 Downstream 84bp
chr3 50129624 50129624 1 + G T UCEC 50129621 + 50129601 50129641 41 GTGATAGATATGATGACTACCGAGACTATGACAGTCCAGAG GTGATAGATATGATGACTACCGATACTATGACAGTCCAGAG < 41bp 0.811348884633538 0.485467855008704 0.84099114 0.6768143 prediction 0.622697769267077 Functional Loss - RBM5 ENSG00000003756 CDS Human protein_coding chr3:50129621 chr3:50129624 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_53012 0 0 1 0 1 RBM5 chr3:50129641 5'GT 50129641 Upstream 18bp
chr11 73670670 73670670 1 + G T UCEC 73670667 + 73670647 73670687 41 GCAAACCTGAAAAGGTGTTCCACGAGTTCTTTGGTGGAAAC GCAAACCTGAAAAGGTGTTCCACTAGTTCTTTGGTGGAAAC < 41bp 0.868355791441651 0.557091341838045 0.4639162 0.32703775 prediction 0.622528899207212 Functional Loss - DNAJB13 ENSG00000187726 CDS Human protein_coding chr11:73670667 chr11:73670670 stopgain 0.833 1 24 hm5C_associated_SNPs_53016 0 0 0 0 1 DNAJB13 chr11:73670700 5'GT 73670700 Upstream 31bp
chr11 836418 836418 1 + G T rs116211118 836415 + 836395 836435 41 TTGGGCTGCTGCGCCACCTTCAAGGAGCGTCGGAACCTGCT TTGGGCTGCTGCGCCACCTTCAATGAGCGTCGGAACCTGCT < 41bp 0.81126136716546 0.436114300710279 0.9198469 0.45811263 prediction 0.622522734330921 Functional Loss - CD151 ENSG00000177697 CDS Human protein_coding chr11:836415 chr11:836418 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_53017 0 0 1 0 1 CD151 chr11:836442 5'GT 836442 Upstream 25bp
chrX 47976520 47976520 1 + G T LUSC 47976517 + 47976497 47976537 41 CAAGTAGCTCTGAGAAGATTCACGAGAGATCTGGTAAGAGG CAAGTAGCTCTGAGAAGATTCACTAGAGATCTGGTAAGAGG < 41bp 0.811260936051186 0.459777885011174 0.18452081 0.108441204 prediction 0.622521872102372 Functional Loss - SSX6 ENSG00000171483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:47976517 chrX:47976520 . . 0 24 hm5C_associated_SNPs_53018 0 0 0 0 1 SSX6 chrX:47976529 5'GT 47976529 Upstream 10bp
chr7 129912925 129912925 1 + G T UCEC 129912922 + 129912902 129912942 41 TTGAAACATTTCAGATTTCCCAAGAAATGGATAACCTCGTG TTGAAACATTTCAGATTTCCCAATAAATGGATAACCTCGTG < 41bp 0.866664989250337 0.555406983255131 0.32137418 0.06614411 prediction 0.622516011990411 Functional Loss - CPA2 ENSG00000158516 CDS Human protein_coding chr7:129912922 chr7:129912925 stopgain 0.999 0 24 hm5C_associated_SNPs_53019 0 0 0 0 2 CPA2 chr7:129912916 3'AG 129912916 Downstream 10bp
chr7 129912925 129912925 1 + G T UCEC 129912922 + 129912902 129912942 41 TTGAAACATTTCAGATTTCCCAAGAAATGGATAACCTCGTG TTGAAACATTTCAGATTTCCCAATAAATGGATAACCTCGTG < 41bp 0.866664989250337 0.555406983255131 0.32137418 0.06614411 prediction 0.622516011990411 Functional Loss - CPA2 ENSG00000158516 CDS Human protein_coding chr7:129912922 chr7:129912925 stopgain 0.999 0 24 hm5C_associated_SNPs_53019 0 0 0 0 2 CPA2 chr7:129913017 5'GT 129913017 Upstream 93bp
chr5 167812361 167812361 1 + G T UCEC 167812359 + 167812339 167812379 41 AGCAGCGCCTGGAGCTTGCACAGCAGGAGTACCAGCAACTG AGCAGCGCCTGGAGCTTGCACATCAGGAGTACCAGCAACTG < 41bp 0.811212367087338 0.497064572189499 0.8521018 0.57786006 prediction 0.622424734174676 Functional Loss - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167812359 chr5:167812361 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_53022 0 0 1 0 1 WWC1 chr5:167812419 5'GT 167812419 Upstream 59bp
chr15 101434182 101434182 1 + G T COAD 101434180 + 101434160 101434200 41 GGAACTTCCCCCTGCTGATGCTGGTGTGGAAGCTGGCACCC GGAACTTCCCCCTGCTGATGCTTGTGTGGAAGCTGGCACCC < 41bp 0.837126240335303 0.525917404219041 0.22626778 0.06281462 prediction 0.622417672232524 Functional Loss - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101434180 chr15:101434182 synonymous SNV . 0 23 hm5C_associated_SNPs_53023 0 0 0 0 1 ALDH1A3 chr15:101434159 3'AG 101434159 Downstream 24bp
chr7 128850908 128850908 1 + G T LUSC 128850906 + 128850886 128850926 41 AGCTCCTGCAGAACCCAGGCCAGGAGCTGTCCTTCAGCATG AGCTCCTGCAGAACCCAGGCCATGAGCTGTCCTTCAGCATG < 41bp 0.811178650185731 0.482058999521336 0.6061703 0.119280785 prediction 0.622357300371463 Functional Loss - SMO ENSG00000128602 CDS Human protein_coding chr7:128850906 chr7:128850908 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_53024 0 0 1 0 1 SMO chr7:128850954 5'GT 128850954 Upstream 47bp
chr12 3387608 3387608 1 + G T OV 3387605 + 3387585 3387625 41 AGCTCTGTGGCTGTGGGCTGCTGGGAGTGGGCATCTGGCTC AGCTCTGTGGCTGTGGGCTGCTGTGAGTGGGCATCTGGCTC < 41bp 0.81117718876842 0.435841099178894 0.8111138 0.24107891 prediction 0.62235437753684 Functional Loss - TSPAN9 ENSG00000011105 CDS Human protein_coding chr12:3387605 chr12:3387608 stopgain 0.997 1 24 hm5C_associated_SNPs_53025 0 0 1 0 1 TSPAN9 chr12:3387587 3'AG 3387587 Downstream 22bp
chr19 17985316 17985316 1 + G T BRCA 17985314 + 17985294 17985334 41 TGTCTACAGATGCTGTACACCGGCATCGTAATCTACGCACC TGTCTACAGATGCTGTACACCGTCATCGTAATCTACGCACC < 41bp 0.811166567695213 0.487886924529638 0.49054566 0.03302926 prediction 0.622333135390425 Functional Loss - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17985314 chr19:17985316 nonsynonymous SNV 0.970 5 23 hm5C_associated_SNPs_53027 0 0 0 0 2 SLC5A5 chr19:17985303 3'AG 17985303 Downstream 14bp
chr19 17985316 17985316 1 + G T BRCA 17985314 + 17985294 17985334 41 TGTCTACAGATGCTGTACACCGGCATCGTAATCTACGCACC TGTCTACAGATGCTGTACACCGTCATCGTAATCTACGCACC < 41bp 0.811166567695213 0.487886924529638 0.49054566 0.03302926 prediction 0.622333135390425 Functional Loss - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17985314 chr19:17985316 nonsynonymous SNV 0.970 5 23 hm5C_associated_SNPs_53027 0 0 0 0 2 SLC5A5 chr19:17985354 5'GT 17985354 Upstream 39bp
chr1 1452640 1452640 1 + G T UCEC 1452638 + 1452618 1452658 41 GCAGACACAGGAGCGGCTGTCAGGCAGTGCCAGCCCTGAGC GCAGACACAGGAGCGGCTGTCATGCAGTGCCAGCCCTGAGC < 41bp 0.811151681142433 0.481253863529927 0.8837193 0.6009358 prediction 0.622303362284866 Functional Loss - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1452638 chr1:1452640 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_53028 0 0 0 0 1 ATAD3A chr1:1452547 3'AG 1452547 Downstream 94bp
chr20 31685464 31685464 1 + G T HNSC 31685461 + 31685441 31685481 41 GAGTCCTGCCCACTTATCATCAGGATCCAGGTGCTGAACCC GAGTCCTGCCCACTTATCATCAGTATCCAGGTGCTGAACCC < 41bp 0.883001866649374 0.571874637949444 0.7673553 0.054921716 prediction 0.622254457399861 Functional Loss - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31685461 chr20:31685464 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_53030 0 0 0 0 1 BPIFB4 chr20:31685423 3'AG 31685423 Downstream 42bp
chr3 179294470 179294470 1 + G T UCEC 179294467 + 179294447 179294487 41 TGCAGTGCAGAGAACTCTTCCAAGAAATGAATATTGAATTG TGCAGTGCAGAGAACTCTTCCAATAAATGAATATTGAATTG < 41bp 0.811107102290784 0.457887715804322 0.3654679 0.076945454 prediction 0.622214204581569 Functional Loss - ACTL6A ENSG00000136518 CDS Human protein_coding chr3:179294467 chr3:179294470 stopgain 0.999 1 24 hm5C_associated_SNPs_53033 0 0 1 0 2 ACTL6A chr3:179294408 3'AG 179294408 Downstream 63bp
chr3 179294470 179294470 1 + G T UCEC 179294467 + 179294447 179294487 41 TGCAGTGCAGAGAACTCTTCCAAGAAATGAATATTGAATTG TGCAGTGCAGAGAACTCTTCCAATAAATGAATATTGAATTG < 41bp 0.811107102290784 0.457887715804322 0.3654679 0.076945454 prediction 0.622214204581569 Functional Loss - ACTL6A ENSG00000136518 CDS Human protein_coding chr3:179294467 chr3:179294470 stopgain 0.999 1 24 hm5C_associated_SNPs_53033 0 0 1 0 2 ACTL6A chr3:179294514 5'GT 179294514 Upstream 45bp
chr16 24909324 24909324 1 + G T UCEC 24909321 + 24909301 24909341 41 GTCCAGCGGACTCTGGCTGCCAAGAACCTGTCCCATGCCAA GTCCAGCGGACTCTGGCTGCCAATAACCTGTCCCATGCCAA < 41bp 0.811097983793265 0.439478992339538 0.140183 0.070834905 prediction 0.622195967586529 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24909321 chr16:24909324 stopgain 1.000 5 24 hm5C_associated_SNPs_53036 0 0 0 0 1 SLC5A11 chr16:24909295 3'AG 24909295 Downstream 30bp
chr6 43111207 43111207 1 + G T BRCA 43111204 + 43111184 43111224 41 CCTGGCAGCCCTCCCCCCTACAAGATGATCCAGACCATTGG CCTGGCAGCCCTCCCCCCTACAATATGATCCAGACCATTGG < 41bp 0.811082124932127 0.44490730298565 0.8233263 0.0870156 prediction 0.622164249864254 Functional Loss - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43111204 chr6:43111207 nonsynonymous SNV 0.991 3 24 hm5C_associated_SNPs_53038 0 0 0 0 2 PTK7 chr6:43111155 3'AG 43111155 Downstream 53bp
chr6 43111207 43111207 1 + G T BRCA 43111204 + 43111184 43111224 41 CCTGGCAGCCCTCCCCCCTACAAGATGATCCAGACCATTGG CCTGGCAGCCCTCCCCCCTACAATATGATCCAGACCATTGG < 41bp 0.811082124932127 0.44490730298565 0.8233263 0.0870156 prediction 0.622164249864254 Functional Loss - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43111204 chr6:43111207 nonsynonymous SNV 0.991 3 24 hm5C_associated_SNPs_53038 0 0 0 0 2 PTK7 chr6:43111160 3'AG 43111160 Downstream 48bp
chr22 40803271 40803271 1 + G T STAD 40803269 + 40803249 40803289 41 ACGGAACTGGTGGCTGACCTCCGGGAAGCCATCCTGCGCGT ACGGAACTGGTGGCTGACCTCCTGGAAGCCATCCTGCGCGT < 41bp 0.828613916871943 0.517561546687515 0.70766985 0.14728987 prediction 0.622104740368856 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40803269 chr22:40803271 nonsynonymous SNV 0.984 4 23 hm5C_associated_SNPs_53041 0 0 1 0 2 SGSM3 chr22:40803205 3'AG 40803205 Downstream 67bp
chr22 40803271 40803271 1 + G T STAD 40803269 + 40803249 40803289 41 ACGGAACTGGTGGCTGACCTCCGGGAAGCCATCCTGCGCGT ACGGAACTGGTGGCTGACCTCCTGGAAGCCATCCTGCGCGT < 41bp 0.828613916871943 0.517561546687515 0.70766985 0.14728987 prediction 0.622104740368856 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40803269 chr22:40803271 nonsynonymous SNV 0.984 4 23 hm5C_associated_SNPs_53041 0 0 1 0 2 SGSM3 chr22:40803332 5'GT 40803332 Upstream 62bp
chr17 78210787 78210787 1 + G T LUAD 78210784 + 78210764 78210804 41 TGCGTACTCCTTCGAGGTGACTGGATACCAGCCTTTCATCC TGCGTACTCCTTCGAGGTGACTGTATACCAGCCTTTCATCC < 41bp 0.88223301601176 0.571192659858713 0.91255116 0.8704942 prediction 0.622080712306094 Functional Loss - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78210784 chr17:78210787 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_53042 0 0 1 0 1 SLC26A11 chr17:78210727 3'AG 78210727 Downstream 61bp
chr16 20818407 20818407 1 + G T UCEC 20818404 + 20818384 20818424 41 GATCTCGAGGAGAGTCAGCCCGAGGCCAAGGTGAGCAACGG GATCTCGAGGAGAGTCAGCCCGATGCCAAGGTGAGCAACGG < 41bp 0.880060915686535 0.569052165430374 0.88295364 0.6629194 prediction 0.622017500512323 Functional Loss - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20818404 chr16:20818407 nonsynonymous SNV 0.575 0 24 hm5C_associated_SNPs_53051 0 0 0 0 1 REXO5 chr16:20818413 5'GT 20818413 Upstream 7bp
chr9 92220729 92220729 1 + G T LUAD 92220727 + 92220707 92220747 41 GCGTGGGCGATGTGCAGCGGCTGGCGGCTATCGTGGGCGCC GCGTGGGCGATGTGCAGCGGCTTGCGGCTATCGTGGGCGCC < 41bp 0.813060661940082 0.50209134035887 0.43497917 0.1824969 prediction 0.621938643162423 Functional Loss - GADD45G ENSG00000130222 CDS Human protein_coding chr9:92220727 chr9:92220729 synonymous SNV . 0 23 hm5C_associated_SNPs_53055 0 0 0 0 1 GADD45G chr9:92220795 5'GT 92220795 Upstream 67bp
chr19 1077968 1077968 1 + G T SARC 1077966 + 1077946 1077986 41 GCGGAGGAGGAGCAGGCTGGCAGCGCGCCGGGAGCAGGCAG GCGGAGGAGGAGCAGGCTGGCATCGCGCCGGGAGCAGGCAG < 41bp 0.837154448497672 0.5261859116472 0.868273 0.81969154 prediction 0.621937073700944 Functional Loss - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1077966 chr19:1077968 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_53056 0 0 1 0 1 ARHGAP45 chr19:1078044 5'GT 1078044 Upstream 77bp
chr12 21608947 21608947 1 + G T UCEC 21608944 + 21608924 21608964 41 TTTAGGAAGGAAAAAGGAAGCTAGAAGCAAATCTAAAGCAG TTTAGGAAGGAAAAAGGAAGCTATAAGCAAATCTAAAGCAG < 41bp 0.835260172558068 0.524310150074128 0.22327003 0.186131 prediction 0.62190004496788 Functional Loss - PYROXD1 ENSG00000121350 CDS Human protein_coding chr12:21608944 chr12:21608947 nonsynonymous SNV 0.096 0 24 hm5C_associated_SNPs_53058 0 0 0 0 2 PYROXD1 chr12:21608929 3'AG 21608929 Downstream 19bp
chr12 21608947 21608947 1 + G T UCEC 21608944 + 21608924 21608964 41 TTTAGGAAGGAAAAAGGAAGCTAGAAGCAAATCTAAAGCAG TTTAGGAAGGAAAAAGGAAGCTATAAGCAAATCTAAAGCAG < 41bp 0.835260172558068 0.524310150074128 0.22327003 0.186131 prediction 0.62190004496788 Functional Loss - PYROXD1 ENSG00000121350 CDS Human protein_coding chr12:21608944 chr12:21608947 nonsynonymous SNV 0.096 0 24 hm5C_associated_SNPs_53058 0 0 0 0 2 PYROXD1 chr12:21609029 5'GT 21609029 Upstream 83bp
chr19 35501099 35501099 1 + G T LUAD 35501096 + 35501076 35501116 41 AACATCTTCCGCTGGGAGACCACGGTGAGCCCGCAGCGGGG AACATCTTCCGCTGGGAGACCACTGTGAGCCCGCAGCGGGG < 41bp 0.810940734924254 0.43126189931663 0.41587797 0.09412256 prediction 0.621881469848508 Functional Loss - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35501096 chr19:35501099 synonymous SNV . 0 24 hm5C_associated_SNPs_53060 0 0 1 0 1 GRAMD1A chr19:35501099 5'GT 35501099 Upstream 1bp
chr13 26974649 26974649 1 + G T LUAD 26974647 + 26974627 26974667 41 TTACCTCAGAACAGGCTATGCAGGACCCCTATTTCTTAGAA TTACCTCAGAACAGGCTATGCATGACCCCTATTTCTTAGAA < 41bp 0.811873758754442 0.500954601712447 0.07996428 0.0485816 prediction 0.621838314083991 Functional Loss - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26974647 chr13:26974649 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_53061 0 0 1 0 1 CDK8 chr13:26974590 3'AG 26974590 Downstream 60bp
chr1 27269461 27269461 1 + G T UCEC 27269459 + 27269439 27269479 41 GGTGGGGCTCAAGGGGCAGCCAGCGATCATTGATGGGGAGC GGTGGGGCTCAAGGGGCAGCCATCGATCATTGATGGGGAGC < 41bp 0.820210429005302 0.509297801263281 0.83885956 0.2791106 prediction 0.621825255484042 Functional Loss - NUDC ENSG00000090273 CDS Human protein_coding chr1:27269459 chr1:27269461 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_53062 0 0 1 0 2 NUDC chr1:27269362 3'AG 27269362 Downstream 100bp
chr1 27269461 27269461 1 + G T UCEC 27269459 + 27269439 27269479 41 GGTGGGGCTCAAGGGGCAGCCAGCGATCATTGATGGGGAGC GGTGGGGCTCAAGGGGCAGCCATCGATCATTGATGGGGAGC < 41bp 0.820210429005302 0.509297801263281 0.83885956 0.2791106 prediction 0.621825255484042 Functional Loss - NUDC ENSG00000090273 CDS Human protein_coding chr1:27269459 chr1:27269461 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_53062 0 0 1 0 2 NUDC chr1:27269556 5'GT 27269556 Upstream 96bp
chr19 41092770 41092770 1 + G T KIRC 41092767 + 41092747 41092787 41 GCACCCGGAGACTGTGGGCTCGGGGCCTCAGCTCTTCCAGA GCACCCGGAGACTGTGGGCTCGGTGCCTCAGCTCTTCCAGA < 41bp 0.886990960604194 0.576078350858244 0.94113964 0.3556289 prediction 0.621825219491901 Functional Loss - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41092767 chr19:41092770 nonsynonymous SNV 0.987 3 24 hm5C_associated_SNPs_53063 0 0 1 0 2 SHKBP1 chr19:41092680 3'AG 41092680 Downstream 91bp
chr19 41092770 41092770 1 + G T KIRC 41092767 + 41092747 41092787 41 GCACCCGGAGACTGTGGGCTCGGGGCCTCAGCTCTTCCAGA GCACCCGGAGACTGTGGGCTCGGTGCCTCAGCTCTTCCAGA < 41bp 0.886990960604194 0.576078350858244 0.94113964 0.3556289 prediction 0.621825219491901 Functional Loss - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41092767 chr19:41092770 nonsynonymous SNV 0.987 3 24 hm5C_associated_SNPs_53063 0 0 1 0 2 SHKBP1 chr19:41092850 5'GT 41092850 Upstream 81bp
chr18 61264272 61264272 1 + A C SKCM 61264268 + 61264248 61264288 41 TGGAAGAAAGAAAGGTGAATCTGCACTTGCCCCGGTTTGAG TGGAAGAAAGAAAGGTGAATCTGCCCTTGCCCCGGTTTGAG < 41bp 0.881723535222776 0.570812427127216 0.17444927 0.07650927 prediction 0.621822216191119 Functional Loss - SERPINB13 ENSG00000197641 CDS Human protein_coding chr18:61264268 chr18:61264272 nonsynonymous SNV 0.013 2 25 hm5C_associated_SNPs_53064 0 0 0 0 1 SERPINB13 chr18:61264193 3'AG 61264193 Downstream 80bp
chr15 91479636 91479636 1 + G T UCEC 91479633 + 91479613 91479653 41 AGATGTGTGAGCTTGGAGCCCAAGAACAAAGTTTTCCAGGA AGATGTGTGAGCTTGGAGCCCAATAACAAAGTTTTCCAGGA < 41bp 0.810858139700929 0.442661871209054 0.57820266 0.27883053 prediction 0.621716279401859 Functional Loss - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91479633 chr15:91479636 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53067 0 0 1 0 1 UNC45A chr15:91479690 5'GT 91479690 Upstream 55bp
chr16 67859858 67859858 1 + G T ACC 67859855 + 67859835 67859875 41 GCCAGCTACGAGGAGGTTCGCAAGGAGCATGAGATCCTCAT GCCAGCTACGAGGAGGTTCGCAATGAGCATGAGATCCTCAT < 41bp 0.810831010922979 0.438531756768908 0.8576362 0.16352433 prediction 0.621662021845957 Functional Loss - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67859855 chr16:67859858 nonsynonymous SNV 0.240 2 24 hm5C_associated_SNPs_53070 0 0 0 0 1 TSNAXIP1 chr16:67859820 3'AG 67859820 Downstream 39bp
chr1 12854086 12854086 1 + G T UCEC 12854083 + 12854063 12854103 41 GGAGGTGGAAACTTCAAGTGCTGGATTTGCGGGATGTTGAC GGAGGTGGAAACTTCAAGTGCTGTATTTGCGGGATGTTGAC < 41bp 0.876772468334911 0.565973121130532 0.20240071 0.22519943 prediction 0.621598694408758 Functional Loss - PRAMEF1 ENSG00000116721 CDS Human protein_coding chr1:12854083 chr1:12854086 nonsynonymous SNV 0.136 4 24 hm5C_associated_SNPs_53073 0 0 0 0 1 PRAMEF1 chr1:12854064 3'AG 12854064 Downstream 23bp
chr1 182377138 182377138 1 + G T UCEC 182377135 + 182377115 182377155 41 CTCAGACTGACCAAAAGAGCCGAGGAGGTCCTTTGTGGCCT CTCAGACTGACCAAAAGAGCCGATGAGGTCCTTTGTGGCCT < 41bp 0.810789958411105 0.484392886033064 0.9119761 0.7405417 prediction 0.621579916822209 Functional Loss - LINC00272 ENSG00000203729 ncRNA_exonic Human lincRNA chr1:182377135 chr1:182377138 . . 0 24 hm5C_associated_SNPs_53074 0 0 0 0 1 LINC00272 chr1:182377167 5'GT 182377167 Upstream 30bp
chr3 157154782 157154782 1 + G T LIHC 157154779 + 157154759 157154799 41 TCTGCAGTGTTGGCCGAGAACTCGGATGATTATGATCTCAT TCTGCAGTGTTGGCCGAGAACTCTGATGATTATGATCTCAT < 41bp 0.810751430644825 0.466436854675473 0.30868655 0.117765814 prediction 0.621502861289651 Functional Loss - PTX3 ENSG00000163661 CDS Human protein_coding chr3:157154779 chr3:157154782 synonymous SNV . 0 24 hm5C_associated_SNPs_53075 0 0 0 0 1 PTX3 chr3:157154852 5'GT 157154852 Upstream 71bp
chr22 35811893 35811893 1 + G T UCEC 35811891 + 35811871 35811911 41 TGATGAGGGACCCTTCGTCCCGGAATTTCATCATGGAGGGC TGATGAGGGACCCTTCGTCCCGTAATTTCATCATGGAGGGC < 41bp 0.810731904271557 0.488290197581794 0.5526052 0.19456679 prediction 0.621463808543113 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35811891 chr22:35811893 synonymous SNV . 0 23 hm5C_associated_SNPs_53077 0 0 1 0 2 MCM5 chr22:35811822 3'AG 35811822 Downstream 72bp
chr22 35811893 35811893 1 + G T UCEC 35811891 + 35811871 35811911 41 TGATGAGGGACCCTTCGTCCCGGAATTTCATCATGGAGGGC TGATGAGGGACCCTTCGTCCCGTAATTTCATCATGGAGGGC < 41bp 0.810731904271557 0.488290197581794 0.5526052 0.19456679 prediction 0.621463808543113 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35811891 chr22:35811893 synonymous SNV . 0 23 hm5C_associated_SNPs_53077 0 0 1 0 2 MCM5 chr22:35811965 5'GT 35811965 Upstream 73bp
chr14 68112513 68112513 1 + G T UCEC 68112511 + 68112491 68112531 41 CATTTCTCCTCAGAGAACTACAGGATAAGGTCAGTGGGCCA CATTTCTCCTCAGAGAACTACATGATAAGGTCAGTGGGCCA < 41bp 0.816370806829936 0.505650550214509 0.4924882 0.24044615 prediction 0.621440513230854 Functional Loss - ARG2 ENSG00000081181 CDS Human protein_coding chr14:68112511 chr14:68112513 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_53079 0 0 1 0 1 ARG2 chr14:68112519 5'GT 68112519 Upstream 7bp
chr16 23364156 23364156 1 + G T LUAD 23364153 + 23364133 23364173 41 TCAAGCATTTGCTGAAGGACCTGGATGAGCTGATGGAAGCT TCAAGCATTTGCTGAAGGACCTGTATGAGCTGATGGAAGCT < 41bp 0.810705592763622 0.438066880819051 0.24493155 0.14419392 prediction 0.621411185527245 Functional Loss - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23364153 chr16:23364156 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_53080 0 0 0 0 1 SCNN1B chr16:23364122 3'AG 23364122 Downstream 35bp
chr16 28507282 28507282 1 + G T LUSC 28507280 + 28507260 28507300 41 GAAGCCAGGACAATCTCAGGCGGGGAGGAGGCTGAGACAGC GAAGCCAGGACAATCTCAGGCGTGGAGGAGGCTGAGACAGC < 41bp 0.810704511703192 0.486527826487098 0.6799695 0.20946747 prediction 0.621409023406384 Functional Loss - APOBR ENSG00000184730 CDS Human protein_coding chr16:28507280 chr16:28507282 nonsynonymous SNV 0.008 0 23 hm5C_associated_SNPs_53081 0 0 1 0 1 APOBR chr16:28507236 3'AG 28507236 Downstream 47bp
chr7 27186946 27186946 1 - C A LUAD 27186948 - 27186928 27186968 41 GCCCGGTTTACCCTTGGATGCAGCGGATGAACTCCTGCGCG GCCCGGTTTACCCTTGGATGCATCGGATGAACTCCTGCGCG < 41bp 0.810696137751605 0.489155500157239 0.9373977 0.29400367 prediction 0.62139227550321 Functional Loss - HOXA6 ENSG00000106006 CDS Human protein_coding chr7:27186948 chr7:27186946 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_53082 0 0 0 0 2 HOXA6 chr7:27186927 5'GT 27186927 Upstream 20bp
chr7 27186946 27186946 1 - C A LUAD 27186948 - 27186928 27186968 41 GCCCGGTTTACCCTTGGATGCAGCGGATGAACTCCTGCGCG GCCCGGTTTACCCTTGGATGCATCGGATGAACTCCTGCGCG < 41bp 0.810696137751605 0.489155500157239 0.9373977 0.29400367 prediction 0.62139227550321 Functional Loss - HOXA6 ENSG00000106006 CDS Human protein_coding chr7:27186948 chr7:27186946 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_53082 0 0 0 0 2 HOXA6 chr7:27187041 3'AG 27187041 Downstream 96bp
chr5 121786343 121786343 1 - C A UCEC 121786345 - 121786325 121786365 41 CTAGCCCGGCTGGAGGCTGACAGGCTTCCAAGAACCTGAAT CTAGCCCGGCTGGAGGCTGACATGCTTCCAAGAACCTGAAT < 41bp 0.828186221965058 0.51749492917879 0.8815582 0.192242 prediction 0.621382585572536 Functional Loss - SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121786345 chr5:121786343 nonsynonymous SNV 0.747 1 23 hm5C_associated_SNPs_53083 0 0 0 0 1 SNCAIP chr5:121786361 3'AG 121786361 Downstream 19bp
chr19 54403953 54403953 1 + G T LUSC 54403951 + 54403931 54403971 41 GTGTAAGGAGAACGTCTTCCCCGGGACGACAACCCGCACCT GTGTAAGGAGAACGTCTTCCCCTGGACGACAACCCGCACCT < 41bp 0.810677139865924 0.48682935924596 0.8968711 0.11224541 prediction 0.621354279731849 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403951 chr19:54403953 nonsynonymous SNV 0.295 3 23 hm5C_associated_SNPs_53084 0 0 0 0 2 PRKCG chr19:54403865 3'AG 54403865 Downstream 89bp
chr19 54403953 54403953 1 + G T LUSC 54403951 + 54403931 54403971 41 GTGTAAGGAGAACGTCTTCCCCGGGACGACAACCCGCACCT GTGTAAGGAGAACGTCTTCCCCTGGACGACAACCCGCACCT < 41bp 0.810677139865924 0.48682935924596 0.8968711 0.11224541 prediction 0.621354279731849 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403951 chr19:54403953 nonsynonymous SNV 0.295 3 23 hm5C_associated_SNPs_53084 0 0 0 0 2 PRKCG chr19:54404003 5'GT 54404003 Upstream 51bp
chr19 7975355 7975355 1 + G T LUAD 7975352 + 7975332 7975372 41 GTGCAGCAAATGCGGCGCTCCGGGAACAAGGAGGAGAACAA GTGCAGCAAATGCGGCGCTCCGGTAACAAGGAGGAGAACAA < 41bp 0.81066720847593 0.444721394838264 0.9171815 0.72320974 prediction 0.621334416951861 Functional Loss - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7975352 chr19:7975355 synonymous SNV . 0 24 hm5C_associated_SNPs_53086 0 0 1 2 1 MAP2K7 chr19:7975338 3'AG 7975338 Downstream 18bp
chr1 151372962 151372962 1 + G T COAD 151372959 + 151372939 151372979 41 AGATGGACACAGCTATAGTCCTAGAGCTATTCATTCATGGC AGATGGACACAGCTATAGTCCTATAGCTATTCATTCATGGC < 41bp 0.810645528520483 0.453550699936402 0.17978776 0.20664585 prediction 0.621291057040966 Functional Loss - PSMB4 ENSG00000159377 CDS Human protein_coding chr1:151372959 chr1:151372962 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_53089 0 0 1 0 1 PSMB4 chr1:151372918 3'AG 151372918 Downstream 45bp
chr14 24108147 24108147 1 + G T UCEC 24108145 + 24108125 24108165 41 AGGCTTTCTGTGAGGATGAGCAGCACCGGGATAGACAGGAA AGGCTTTCTGTGAGGATGAGCATCACCGGGATAGACAGGAA < 41bp 0.81468471821729 0.504045869163014 0.33685833 0.12678626 prediction 0.621277698108551 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24108145 chr14:24108147 nonsynonymous SNV 0.123 4 23 hm5C_associated_SNPs_53091 0 0 1 0 1 DHRS2 chr14:24108213 5'GT 24108213 Upstream 67bp
chr17 19232094 19232094 1 + G T UCEC 19232091 + 19232071 19232111 41 GCCACCGTACAATCTGTCCCCAAGAACTCGGACCCCTGGGC GCCACCGTACAATCTGTCCCCAATAACTCGGACCCCTGGGC < 41bp 0.810638769247699 0.438905105546693 0.18701494 0.01916033 prediction 0.621277538495398 Functional Loss - EPN2 ENSG00000072134 CDS Human protein_coding chr17:19232091 chr17:19232094 nonsynonymous SNV 0.299 1 24 hm5C_associated_SNPs_53092 0 0 1 0 1 EPN2 chr17:19232024 3'AG 19232024 Downstream 71bp
chr2 201758087 201758087 1 + A T LUAD 201758083 + 201758063 201758103 41 AGACCTGGACAAAGTCATGTCTGCAGTGAAAGGAATTGACG AGACCTGGACAAAGTCATGTCTGCTGTGAAAGGAATTGACG < 41bp 0.810619179928256 0.494091349540311 0.13943607 0.09836209 prediction 0.621238359856512 Functional Loss - NIF3L1 ENSG00000196290 CDS Human protein_coding chr2:201758083 chr2:201758087 synonymous SNV . 0 25 hm5C_associated_SNPs_53094 0 0 1 0 1 NIF3L1 chr2:201758131 5'GT 201758131 Upstream 45bp
chr10 112360249 112360249 1 + G T UCEC 112360246 + 112360226 112360266 41 TAAATTAGAAGGTATTATTACTCGAGTAGAGACTTATCTCA TAAATTAGAAGGTATTATTACTCTAGTAGAGACTTATCTCA < 41bp 0.810613969584693 0.482604049337259 0.22201917 0.8361528 prediction 0.621227939169387 Functional Loss - SMC3 ENSG00000108055 CDS Human protein_coding chr10:112360246 chr10:112360249 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53095 0 0 1 0 2 SMC3 chr10:112360197 3'AG 112360197 Downstream 53bp
chr10 112360249 112360249 1 + G T UCEC 112360246 + 112360226 112360266 41 TAAATTAGAAGGTATTATTACTCGAGTAGAGACTTATCTCA TAAATTAGAAGGTATTATTACTCTAGTAGAGACTTATCTCA < 41bp 0.810613969584693 0.482604049337259 0.22201917 0.8361528 prediction 0.621227939169387 Functional Loss - SMC3 ENSG00000108055 CDS Human protein_coding chr10:112360246 chr10:112360249 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53095 0 0 1 0 2 SMC3 chr10:112360304 5'GT 112360304 Upstream 56bp
chr10 99361669 99361669 1 + G T SARC 99361667 + 99361647 99361687 41 TCCTGGGGGCTCAGGTGTGCCAGCTGGAGCGACTGTGCTGC TCCTGGGGGCTCAGGTGTGCCATCTGGAGCGACTGTGCTGC < 41bp 0.810607637936785 0.47829508462892 0.87344813 0.3056149 prediction 0.62121527587357 Functional Loss - HOGA1 ENSG00000155252;ENSG00000241935;ENSG00000249967 CDS Human other chr10:99361667 chr10:99361669 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_53097 0 0 1 0 2 HOGA1 chr10:99361614 3'AG 99361614 Downstream 56bp
chr10 99361669 99361669 1 + G T SARC 99361667 + 99361647 99361687 41 TCCTGGGGGCTCAGGTGTGCCAGCTGGAGCGACTGTGCTGC TCCTGGGGGCTCAGGTGTGCCATCTGGAGCGACTGTGCTGC < 41bp 0.810607637936785 0.47829508462892 0.87344813 0.3056149 prediction 0.62121527587357 Functional Loss - HOGA1 ENSG00000155252;ENSG00000241935;ENSG00000249967 CDS Human other chr10:99361667 chr10:99361669 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_53097 0 0 1 0 2 HOGA1 chr10:99361747 5'GT 99361747 Upstream 79bp
chr9 140109136 140109136 1 + G T COAD 140109134 + 140109114 140109154 41 AGCTCTTCATGCTGCAGCCGCGGGAGCCAGGTGAGCCCAGC AGCTCTTCATGCTGCAGCCGCGTGAGCCAGGTGAGCCCAGC < 41bp 0.83105242369264 0.52045805145011 0.91122115 0.3331926 prediction 0.62118874448506 Functional Loss - NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140109134 chr9:140109136 synonymous SNV . 0 23 hm5C_associated_SNPs_53099 0 0 1 0 1 NDOR1 chr9:140109143 5'GT 140109143 Upstream 8bp
chr1 76272741 76272741 1 + G T UCEC 76272739 + 76272719 76272759 41 GTAGAAGGGAGAGGACTTGCCAGAGGTGAAATAGGAATGGC GTAGAAGGGAGAGGACTTGCCATAGGTGAAATAGGAATGGC < 41bp 0.816700068858324 0.506119253334806 0.8920775 0.8170418 prediction 0.621161631047037 Functional Loss - MSH4 ENSG00000057468 CDS Human protein_coding chr1:76272739 chr1:76272741 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_53100 0 0 0 0 2 MSH4 chr1:76272666 3'AG 76272666 Downstream 76bp
chr1 76272741 76272741 1 + G T UCEC 76272739 + 76272719 76272759 41 GTAGAAGGGAGAGGACTTGCCAGAGGTGAAATAGGAATGGC GTAGAAGGGAGAGGACTTGCCATAGGTGAAATAGGAATGGC < 41bp 0.816700068858324 0.506119253334806 0.8920775 0.8170418 prediction 0.621161631047037 Functional Loss - MSH4 ENSG00000057468 CDS Human protein_coding chr1:76272739 chr1:76272741 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_53100 0 0 0 0 2 MSH4 chr1:76272826 5'GT 76272826 Upstream 86bp
chr15 40757569 40757569 1 + G T COAD 40757567 + 40757547 40757587 41 AAGTGTTTGCATCGCGACATCAGGACCAGAACAGTGTGGCC AAGTGTTTGCATCGCGACATCATGACCAGAACAGTGTGGCC < 41bp 0.810577220461826 0.492429026477144 0.38336337 0.079126775 prediction 0.621154440923652 Functional Loss - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40757567 chr15:40757569 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_53101 0 0 1 0 3 BAHD1 chr15:40757534 3'AG 40757534 Downstream 36bp
chr15 40757569 40757569 1 + G T COAD 40757567 + 40757547 40757587 41 AAGTGTTTGCATCGCGACATCAGGACCAGAACAGTGTGGCC AAGTGTTTGCATCGCGACATCATGACCAGAACAGTGTGGCC < 41bp 0.810577220461826 0.492429026477144 0.38336337 0.079126775 prediction 0.621154440923652 Functional Loss - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40757567 chr15:40757569 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_53101 0 0 1 0 3 BAHD1 chr15:40757543 3'AG 40757543 Downstream 27bp
chr15 40757569 40757569 1 + G T COAD 40757567 + 40757547 40757587 41 AAGTGTTTGCATCGCGACATCAGGACCAGAACAGTGTGGCC AAGTGTTTGCATCGCGACATCATGACCAGAACAGTGTGGCC < 41bp 0.810577220461826 0.492429026477144 0.38336337 0.079126775 prediction 0.621154440923652 Functional Loss - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40757567 chr15:40757569 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_53101 0 0 1 0 3 BAHD1 chr15:40757634 5'GT 40757634 Upstream 66bp
chr2 219754782 219754782 1 + G T LUAD 219754780 + 219754760 219754800 41 CCGTGTCCAATGCGTGTGCCCTGGGCAAACTGAAGGCCTGT CCGTGTCCAATGCGTGTGCCCTTGGCAAACTGAAGGCCTGT < 41bp 0.810572801999294 0.485561895774296 0.56696177 0.18301362 prediction 0.621145603998587 Functional Loss - WNT10A ENSG00000135925 CDS Human protein_coding chr2:219754780 chr2:219754782 synonymous SNV . 0 23 hm5C_associated_SNPs_53103 0 0 0 0 1 WNT10A chr2:219754706 3'AG 219754706 Downstream 77bp
chr11 65721086 65721086 1 + G T LUSC 65721084 + 65721064 65721104 41 AGCGGCAGGAGGAGCGGCAGCAGGCCGAGCTGCGGCGGGCC AGCGGCAGGAGGAGCGGCAGCATGCCGAGCTGCGGCGGGCC < 41bp 0.810560925454155 0.475802952680683 0.88287795 0.45253903 prediction 0.621121850908311 Functional Loss - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65721084 chr11:65721086 unknown 0.879 1 23 hm5C_associated_SNPs_53104 0 0 0 0 1 TSGA10IP chr11:65721038 3'AG 65721038 Downstream 49bp
chr7 31692297 31692297 1 + G T LUAD 31692295 + 31692275 31692315 41 TGGCCAGGAGGCTCCCTGTTCAGGTGGGACCCAGTTGGCTG TGGCCAGGAGGCTCCCTGTTCATGTGGGACCCAGTTGGCTG < 41bp 0.831597947941642 0.521046805306726 0.8747655 0.1893383 prediction 0.621102285269833 Functional Loss - CCDC129 ENSG00000180347 CDS Human protein_coding chr7:31692295 chr7:31692297 nonsynonymous SNV 0.005 3 23 hm5C_associated_SNPs_53105 0 0 0 0 1 CCDC129 chr7:31692297 5'GT 31692297 Upstream 1bp
chr10 118215324 118215324 1 + G T UCEC 118215322 + 118215302 118215342 41 GGAAGCTGGGTCAAGGATACCAGGCCTTGGAAGAATAACTG GGAAGCTGGGTCAAGGATACCATGCCTTGGAAGAATAACTG < 41bp 0.831296812009855 0.520772732040558 0.28072703 0.017682642 prediction 0.621048159938594 Functional Loss - PNLIPRP3 ENSG00000203837 CDS Human protein_coding chr10:118215322 chr10:118215324 nonsynonymous SNV 0.978 5 23 hm5C_associated_SNPs_53108 0 0 0 0 2 PNLIPRP3 chr10:118215234 3'AG 118215234 Downstream 91bp
chr10 118215324 118215324 1 + G T UCEC 118215322 + 118215302 118215342 41 GGAAGCTGGGTCAAGGATACCAGGCCTTGGAAGAATAACTG GGAAGCTGGGTCAAGGATACCATGCCTTGGAAGAATAACTG < 41bp 0.831296812009855 0.520772732040558 0.28072703 0.017682642 prediction 0.621048159938594 Functional Loss - PNLIPRP3 ENSG00000203837 CDS Human protein_coding chr10:118215322 chr10:118215324 nonsynonymous SNV 0.978 5 23 hm5C_associated_SNPs_53108 0 0 0 0 2 PNLIPRP3 chr10:118215342 5'GT 118215342 Upstream 19bp
chr11 66325626 66325626 1 + G T OV 66325624 + 66325604 66325644 41 AGTTCCGGCAGAAGGCCTCCCTGCACGAAGCCTGGACCCGG AGTTCCGGCAGAAGGCCTCCCTTCACGAAGCCTGGACCCGG < 41bp 0.810517993099478 0.490885381265757 0.34883085 0.23087221 prediction 0.621035986198957 Functional Loss - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66325624 chr11:66325626 unknown . 0 23 hm5C_associated_SNPs_53109 0 0 0 0 1 ACTN3 chr11:66325645 5'GT 66325645 Upstream 20bp
chr9 311994 311994 1 + G T LUSC 311991 + 311971 312011 41 AAACGTGCTGTGCGACGTGTCTGGGAAAGGCCCCGTCACTG AAACGTGCTGTGCGACGTGTCTGTGAAAGGCCCCGTCACTG < 41bp 0.810506963746813 0.494621929575504 0.27602068 0.019830197 prediction 0.621013927493627 Functional Loss - DOCK8 ENSG00000107099 CDS Human protein_coding chr9:311991 chr9:311994 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53111 0 0 1 0 1 DOCK8 chr9:311954 3'AG 311954 Downstream 41bp
chr2 27373006 27373006 1 + G T LUAD 27373004 + 27372984 27373024 41 TGTGCAGAGCGAGGCCAGTCCTGAGAATGCCGCGCGGGAGC TGTGCAGAGCGAGGCCAGTCCTTAGAATGCCGCGCGGGAGC < 41bp 0.81050637452777 0.491467984403881 0.84589887 0.58694375 prediction 0.621012749055541 Functional Loss - TCF23 ENSG00000163792 CDS Human protein_coding chr2:27373004 chr2:27373006 stopgain 0.626 1 23 hm5C_associated_SNPs_53112 0 0 0 0 1 TCF23 chr2:27372991 3'AG 27372991 Downstream 16bp
chr11 64064453 64064453 1 + G T COAD 64064450 + 64064430 64064470 41 GGGCAGCGCCTTCTTTTTCTCAGGGACCATCATCACCACCA GGGCAGCGCCTTCTTTTTCTCAGTGACCATCATCACCACCA < 41bp 0.878618588242383 0.568127044069887 0.9331744 0.30004722 prediction 0.620983088344992 Functional Loss - KCNK4 ENSG00000182450 CDS Human protein_coding chr11:64064450 chr11:64064453 stopgain 0.996 4 24 hm5C_associated_SNPs_53114 0 0 0 0 1 KCNK4 chr11:64064473 5'GT 64064473 Upstream 21bp
chr10 69957180 69957180 1 + A C LUAD 69957176 + 69957156 69957196 41 GCTTTTTCCGACCACATTTCCTGCAGGCTCCTGGGGATATG GCTTTTTCCGACCACATTTCCTGCCGGCTCCTGGGGATATG < 41bp 0.810490567224891 0.402792314655864 0.3107758 0.13993827 prediction 0.620981134449781 Functional Loss - MYPN ENSG00000138347 CDS Human protein_coding chr10:69957176 chr10:69957180 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_53115 0 0 0 0 2 MYPN chr10:69957109 3'AG 69957109 Downstream 72bp
chr10 69957180 69957180 1 + A C LUAD 69957176 + 69957156 69957196 41 GCTTTTTCCGACCACATTTCCTGCAGGCTCCTGGGGATATG GCTTTTTCCGACCACATTTCCTGCCGGCTCCTGGGGATATG < 41bp 0.810490567224891 0.402792314655864 0.3107758 0.13993827 prediction 0.620981134449781 Functional Loss - MYPN ENSG00000138347 CDS Human protein_coding chr10:69957176 chr10:69957180 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_53115 0 0 0 0 2 MYPN chr10:69957235 5'GT 69957235 Upstream 56bp
chr1 38023246 38023246 1 + G T UCEC 38023244 + 38023224 38023264 41 CCCCCAGCAGCCTGGACCTTCAGGTTCAGCCCCACAGCCAC CCCCCAGCAGCCTGGACCTTCATGTTCAGCCCCACAGCCAC < 41bp 0.810473390366846 0.469151397345599 0.8892523 0.23534235 prediction 0.620946780733692 Functional Loss - DNALI1 ENSG00000163879 CDS Human protein_coding chr1:38023244 chr1:38023246 nonsynonymous SNV 0.808 3 23 hm5C_associated_SNPs_53116 0 0 0 0 1 DNALI1 chr1:38023204 3'AG 38023204 Downstream 43bp
chr3 132075603 132075603 1 + A C SARC 132075599 + 132075579 132075619 41 TATCCCCTCATGCTACCTGGCTGCAGCCCCAGCTGTCCTCT TATCCCCTCATGCTACCTGGCTGCCGCCCCAGCTGTCCTCT < 41bp 0.810469254506221 0.413868030155963 0.06319031 0.046201557 prediction 0.620938509012442 Functional Loss - ACPP ENSG00000014257 CDS Human protein_coding chr3:132075599 chr3:132075603 nonsynonymous SNV 0.489 1 25 hm5C_associated_SNPs_53117 0 0 0 0 2 ACPP chr3:132075530 3'AG 132075530 Downstream 74bp
chr3 132075603 132075603 1 + A C SARC 132075599 + 132075579 132075619 41 TATCCCCTCATGCTACCTGGCTGCAGCCCCAGCTGTCCTCT TATCCCCTCATGCTACCTGGCTGCCGCCCCAGCTGTCCTCT < 41bp 0.810469254506221 0.413868030155963 0.06319031 0.046201557 prediction 0.620938509012442 Functional Loss - ACPP ENSG00000014257 CDS Human protein_coding chr3:132075599 chr3:132075603 nonsynonymous SNV 0.489 1 25 hm5C_associated_SNPs_53117 0 0 0 0 2 ACPP chr3:132075699 5'GT 132075699 Upstream 97bp
chr11 15134050 15134050 1 + G T PAAD 15134048 + 15134028 15134068 41 CCTGGCAATGGAGAGGCGGCCAGCGAAGGTCCAGGTGGCTG CCTGGCAATGGAGAGGCGGCCATCGAAGGTCCAGGTGGCTG < 41bp 0.836069655977818 0.525608721071661 0.57078254 0.43444043 prediction 0.620921869812314 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15134048 chr11:15134050 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_53118 0 0 0 0 1 INSC chr11:15134111 5'GT 15134111 Upstream 62bp
chr17 61557711 61557711 1 + G T PRAD 61557708 + 61557688 61557728 41 ACGCCCCCAGGCTTCACAGACACGGGGGCCTACTGGCGCTC ACGCCCCCAGGCTTCACAGACACTGGGGCCTACTGGCGCTC < 41bp 0.810431589589818 0.44163308667294 0.883348 0.36002332 prediction 0.620863179179636 Functional Loss - ACE ENSG00000159640 CDS Human protein_coding chr17:61557708 chr17:61557711 synonymous SNV . 0 24 hm5C_associated_SNPs_53119 0 0 0 0 1 ACE chr17:61557698 3'AG 61557698 Downstream 14bp
chr6 133783539 133783539 1 + G T LUSC 133783537 + 133783517 133783557 41 CTGCCTATGCAGGCCAGACTCAGTATTCGGGGATGCAGCAG CTGCCTATGCAGGCCAGACTCATTATTCGGGGATGCAGCAG < 41bp 0.814738009597015 0.504307080943678 0.14601845 0.04080844 prediction 0.620861857306674 Functional Loss - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133783537 chr6:133783539 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_53120 0 0 0 0 2 EYA4 chr6:133783473 3'AG 133783473 Downstream 67bp
chr6 133783539 133783539 1 + G T LUSC 133783537 + 133783517 133783557 41 CTGCCTATGCAGGCCAGACTCAGTATTCGGGGATGCAGCAG CTGCCTATGCAGGCCAGACTCATTATTCGGGGATGCAGCAG < 41bp 0.814738009597015 0.504307080943678 0.14601845 0.04080844 prediction 0.620861857306674 Functional Loss - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133783537 chr6:133783539 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_53120 0 0 0 0 2 EYA4 chr6:133783615 5'GT 133783615 Upstream 77bp
chr19 38899416 38899416 1 + G T HNSC 38899414 + 38899394 38899434 41 CTTATGGGCAACGTTCCAGACCGGGGGGGCCGCCCAAATGA CTTATGGGCAACGTTCCAGACCTGGGGGGCCGCCCAAATGA < 41bp 0.820528432751283 0.510102516241067 0.81898916 0.24394634 prediction 0.620851833020433 Functional Loss - FAM98C ENSG00000130244 CDS Human protein_coding chr19:38899414 chr19:38899416 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_53121 0 0 1 0 1 FAM98C chr19:38899391 3'AG 38899391 Downstream 26bp
chr15 64710845 64710845 1 + G T UCEC 64710842 + 64710822 64710862 41 ACCAGTTGCGAATCCAGGATCAAGAATTTCAGGAAGGCTTT ACCAGTTGCGAATCCAGGATCAATAATTTCAGGAAGGCTTT < 41bp 0.810394942138809 0.440920900664297 0.29503524 0.15862933 prediction 0.620789884277617 Functional Loss - TRIP4 ENSG00000103671 CDS Human protein_coding chr15:64710842 chr15:64710845 stopgain 1.000 1 24 hm5C_associated_SNPs_53125 0 0 1 0 1 TRIP4 chr15:64710927 5'GT 64710927 Upstream 83bp
chr15 73575342 73575342 1 + G T LUAD 73575340 + 73575320 73575360 41 ATGGGAGCCCCACCTCTCCTCTGGACAGTAATATGCTGCTG ATGGGAGCCCCACCTCTCCTCTTGACAGTAATATGCTGCTG < 41bp 0.813799509046584 0.503407897357645 0.39524764 0.10141131 prediction 0.620783223377878 Functional Loss - NEO1 ENSG00000067141 CDS Human protein_coding chr15:73575340 chr15:73575342 synonymous SNV . 0 23 hm5C_associated_SNPs_53126 0 0 1 0 1 NEO1 chr15:73575305 3'AG 73575305 Downstream 38bp
chr19 19638159 19638159 1 + G T LUAD 19638156 + 19638136 19638176 41 CTGTTACAGGCAGAAACCGACCGGAGGTAGCACCGCAGGGG CTGTTACAGGCAGAAACCGACCGTAGGTAGCACCGCAGGGG < 41bp 0.810378320646868 0.437006500197742 0.5795866 0.1849541 prediction 0.620756641293737 Functional Loss - NDUFA13 ENSG00000186010;ENSG00000250067;ENSG00000258674 CDS Human other chr19:19638156 chr19:19638159 synonymous SNV . 0 24 hm5C_associated_SNPs_53128 0 0 1 0 2 NDUFA13 chr19:19638090 3'AG 19638090 Downstream 70bp
chr19 19638159 19638159 1 + G T LUAD 19638156 + 19638136 19638176 41 CTGTTACAGGCAGAAACCGACCGGAGGTAGCACCGCAGGGG CTGTTACAGGCAGAAACCGACCGTAGGTAGCACCGCAGGGG < 41bp 0.810378320646868 0.437006500197742 0.5795866 0.1849541 prediction 0.620756641293737 Functional Loss - NDUFA13 ENSG00000186010;ENSG00000250067;ENSG00000258674 CDS Human other chr19:19638156 chr19:19638159 synonymous SNV . 0 24 hm5C_associated_SNPs_53128 0 0 1 0 2 NDUFA13 chr19:19638161 5'GT 19638161 Upstream 3bp
chr19 19638158 19638158 1 + G T LUAD 19638156 + 19638136 19638176 41 CTGTTACAGGCAGAAACCGACCGGAGGTAGCACCGCAGGGG CTGTTACAGGCAGAAACCGACCTGAGGTAGCACCGCAGGGG < 41bp 0.810378320646868 0.482338045492571 0.5795866 0.36132556 prediction 0.620756641293737 Functional Loss - NDUFA13 ENSG00000186010;ENSG00000250067;ENSG00000258674 CDS Human other chr19:19638156 chr19:19638158 nonsynonymous SNV 0.900 4 23 hm5C_associated_SNPs_53129 0 0 1 0 2 NDUFA13 chr19:19638090 3'AG 19638090 Downstream 69bp
chr19 19638158 19638158 1 + G T LUAD 19638156 + 19638136 19638176 41 CTGTTACAGGCAGAAACCGACCGGAGGTAGCACCGCAGGGG CTGTTACAGGCAGAAACCGACCTGAGGTAGCACCGCAGGGG < 41bp 0.810378320646868 0.482338045492571 0.5795866 0.36132556 prediction 0.620756641293737 Functional Loss - NDUFA13 ENSG00000186010;ENSG00000250067;ENSG00000258674 CDS Human other chr19:19638156 chr19:19638158 nonsynonymous SNV 0.900 4 23 hm5C_associated_SNPs_53129 0 0 1 0 2 NDUFA13 chr19:19638161 5'GT 19638161 Upstream 4bp
chr22 39069209 39069209 1 + G T SARC 39069206 + 39069186 39069226 41 CCCACTTAATGGAGAAGGAACTGGATGAACTGAGGATCAGC CCCACTTAATGGAGAAGGAACTGTATGAACTGAGGATCAGC < 41bp 0.810354630747466 0.463446722041134 0.4447271 0.23961166 prediction 0.620709261494932 Functional Loss - CBY1 ENSG00000100211 CDS Human protein_coding chr22:39069206 chr22:39069209 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_53132 0 0 1 0 1 CBY1 chr22:39069164 3'AG 39069164 Downstream 46bp
chr19 41726600 41726600 1 + G T UCEC 41726597 + 41726577 41726617 41 CAGGGAATATCACAGGTGCCCGGGGACTCACGGGCACCCTT CAGGGAATATCACAGGTGCCCGGTGACTCACGGGCACCCTT < 41bp 0.810352360126446 0.422381768962527 0.9275017 0.9060923 prediction 0.620704720252893 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41726597 chr19:41726600 stopgain 0.962 1 24 hm5C_associated_SNPs_53133 0 0 0 0 1 AXL chr19:41726541 3'AG 41726541 Downstream 60bp
chr17 35745633 35745633 1 + G T UCEC 35745631 + 35745611 35745651 41 ATGAGAACCTAGAGAAGAGACAGAAATGGAGTATTGTGGTC ATGAGAACCTAGAGAAGAGACATAAATGGAGTATTGTGGTC < 41bp 0.815293726841357 0.504952085754211 0.13969916 0.23644525 prediction 0.620683282174292 Functional Loss - C17orf78 ENSG00000167230 CDS Human other chr17:35745631 chr17:35745633 nonsynonymous SNV 0.988 0 23 hm5C_associated_SNPs_53134 0 0 0 0 2 C17orf78 chr17:35745605 3'AG 35745605 Downstream 29bp
chr17 35745633 35745633 1 + G T UCEC 35745631 + 35745611 35745651 41 ATGAGAACCTAGAGAAGAGACAGAAATGGAGTATTGTGGTC ATGAGAACCTAGAGAAGAGACATAAATGGAGTATTGTGGTC < 41bp 0.815293726841357 0.504952085754211 0.13969916 0.23644525 prediction 0.620683282174292 Functional Loss - C17orf78 ENSG00000167230 CDS Human other chr17:35745631 chr17:35745633 nonsynonymous SNV 0.988 0 23 hm5C_associated_SNPs_53134 0 0 0 0 2 C17orf78 chr17:35745729 5'GT 35745729 Upstream 97bp
chr1 206651108 206651108 1 + G T UCEC 206651106 + 206651086 206651126 41 CCGCAGGTACCGGATCACCACGGAGAAGCCGGCTGGGGCCA CCGCAGGTACCGGATCACCACGTAGAAGCCGGCTGGGGCCA < 41bp 0.810340160668564 0.472525433793324 0.90448 0.5506736 prediction 0.620680321337128 Functional Loss - IKBKE ENSG00000143466 CDS Human other chr1:206651106 chr1:206651108 stopgain 0.195 1 23 hm5C_associated_SNPs_53135 0 0 0 0 2 IKBKE chr1:206651092 3'AG 206651092 Downstream 17bp
chr1 206651108 206651108 1 + G T UCEC 206651106 + 206651086 206651126 41 CCGCAGGTACCGGATCACCACGGAGAAGCCGGCTGGGGCCA CCGCAGGTACCGGATCACCACGTAGAAGCCGGCTGGGGCCA < 41bp 0.810340160668564 0.472525433793324 0.90448 0.5506736 prediction 0.620680321337128 Functional Loss - IKBKE ENSG00000143466 CDS Human other chr1:206651106 chr1:206651108 stopgain 0.195 1 23 hm5C_associated_SNPs_53135 0 0 0 0 2 IKBKE chr1:206651202 5'GT 206651202 Upstream 95bp
chr10 105139503 105139503 1 + G T CESC 105139500 + 105139480 105139520 41 TTGGATCCAAAAGCAAAAAACAAGATCCCAATGCTCCACCT TTGGATCCAAAAGCAAAAAACAATATCCCAATGCTCCACCT < 41bp 0.810305869035765 0.450098941881615 0.5544852 0.32694983 prediction 0.62061173807153 Functional Loss - TAF5 ENSG00000148835 CDS Human protein_coding chr10:105139500 chr10:105139503 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53139 0 0 0 0 1 TAF5 chr10:105139528 5'GT 105139528 Upstream 26bp
chr19 8430860 8430860 1 + G T UCEC 8430858 + 8430838 8430878 41 ACACAACTCAAGGCTCAGAACAGCAGGATCCAGCAACTCTT ACACAACTCAAGGCTCAGAACATCAGGATCCAGCAACTCTT < 41bp 0.832080591620753 0.521822489391711 0.25999367 0.13279241 prediction 0.620516204458083 Functional Loss - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8430858 chr19:8430860 nonsynonymous SNV 0.984 2 23 hm5C_associated_SNPs_53141 0 0 1 0 2 ANGPTL4 chr19:8430838 3'AG 8430838 Downstream 23bp
chr19 8430860 8430860 1 + G T UCEC 8430858 + 8430838 8430878 41 ACACAACTCAAGGCTCAGAACAGCAGGATCCAGCAACTCTT ACACAACTCAAGGCTCAGAACATCAGGATCCAGCAACTCTT < 41bp 0.832080591620753 0.521822489391711 0.25999367 0.13279241 prediction 0.620516204458083 Functional Loss - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8430858 chr19:8430860 nonsynonymous SNV 0.984 2 23 hm5C_associated_SNPs_53141 0 0 1 0 2 ANGPTL4 chr19:8430948 5'GT 8430948 Upstream 89bp
chr22 32889166 32889166 1 + G T BRCA 32889163 + 32889143 32889183 41 AACTACGGATCTTCCGACTTCTGGATGTTCGTTCCGTCTTG AACTACGGATCTTCCGACTTCTGTATGTTCGTTCCGTCTTG < 41bp 0.859450606100722 0.54919678464038 0.6522944 0.2365945 prediction 0.620507642920683 Functional Loss - FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32889163 chr22:32889166 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53142 0 0 1 0 1 FBXO7 chr22:32889092 3'AG 32889092 Downstream 75bp
chr17 8157565 8157565 1 + G T THCA 8157562 + 8157542 8157582 41 CTTACTGCTGGATGATGTTGCTCGGGAGTCCTGGCTCCTTC CTTACTGCTGGATGATGTTGCTCTGGAGTCCTGGCTCCTTC < 41bp 0.810252937464036 0.436888052959387 0.29787415 0.43528372 prediction 0.620505874928071 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8157562 chr17:8157565 nonsynonymous SNV 0.985 0 24 hm5C_associated_SNPs_53143 0 0 1 0 2 PFAS chr17:8157484 3'AG 8157484 Downstream 82bp
chr17 8157565 8157565 1 + G T THCA 8157562 + 8157542 8157582 41 CTTACTGCTGGATGATGTTGCTCGGGAGTCCTGGCTCCTTC CTTACTGCTGGATGATGTTGCTCTGGAGTCCTGGCTCCTTC < 41bp 0.810252937464036 0.436888052959387 0.29787415 0.43528372 prediction 0.620505874928071 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8157562 chr17:8157565 nonsynonymous SNV 0.985 0 24 hm5C_associated_SNPs_53143 0 0 1 0 2 PFAS chr17:8157619 5'GT 8157619 Upstream 55bp
chr8 27310642 27310642 1 + G T UCEC 27310640 + 27310620 27310660 41 TTTTATTGCAGTGGAGTTCACAGGGCCCCCACAGAAGCCCC TTTTATTGCAGTGGAGTTCACATGGCCCCCACAGAAGCCCC < 41bp 0.810251066716643 0.470123631955105 0.90085375 0.3234614 prediction 0.620502133433286 Functional Loss - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27310640 chr8:27310642 nonsynonymous SNV 0.880 3 23 hm5C_associated_SNPs_53144 0 0 1 0 2 PTK2B chr8:27310631 3'AG 27310631 Downstream 12bp
chr8 27310642 27310642 1 + G T UCEC 27310640 + 27310620 27310660 41 TTTTATTGCAGTGGAGTTCACAGGGCCCCCACAGAAGCCCC TTTTATTGCAGTGGAGTTCACATGGCCCCCACAGAAGCCCC < 41bp 0.810251066716643 0.470123631955105 0.90085375 0.3234614 prediction 0.620502133433286 Functional Loss - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27310640 chr8:27310642 nonsynonymous SNV 0.880 3 23 hm5C_associated_SNPs_53144 0 0 1 0 2 PTK2B chr8:27310677 5'GT 27310677 Upstream 36bp
chr16 28841204 28841204 1 + G T GBM 28841202 + 28841182 28841222 41 GCCCTTAGAAAAGGACAACTCAGAAGAGTTTCGTCAGCGAG GCCCTTAGAAAAGGACAACTCATAAGAGTTTCGTCAGCGAG < 41bp 0.817760586621926 0.507566523534933 0.31482148 0.07548076 prediction 0.620388126173986 Functional Loss - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28841202 chr16:28841204 stopgain 0.996 1 23 hm5C_associated_SNPs_53148 0 0 1 0 1 ATXN2L chr16:28841190 3'AG 28841190 Downstream 15bp
chr1 92443743 92443743 1 + G T UCEC 92443740 + 92443720 92443760 41 TTTAGGAGAAAATGGATAACCAAGAATATAAGGATGCATAC TTTAGGAGAAAATGGATAACCAATAATATAAGGATGCATAC < 41bp 0.810191749342133 0.479275171606958 0.24680915 0.21985853 prediction 0.620383498684267 Functional Loss - BRDT ENSG00000137948 CDS Human protein_coding chr1:92443740 chr1:92443743 stopgain 0.998 0 24 hm5C_associated_SNPs_53149 0 0 0 0 1 BRDT chr1:92443725 3'AG 92443725 Downstream 19bp
chr2 231174651 231174651 1 + G T LUSC 231174648 + 231174628 231174668 41 TTATCTTCTAGATGAGAAACCTGGATGAGTGTGAGGTGTGC TTATCTTCTAGATGAGAAACCTGTATGAGTGTGAGGTGTGC < 41bp 0.810180954665879 0.450073757605006 0.34896088 0.15184805 prediction 0.620361909331758 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231174648 chr2:231174651 nonsynonymous SNV 0.024 3 24 hm5C_associated_SNPs_53150 0 0 0 1 1 SP140 chr2:231174639 3'AG 231174639 Downstream 13bp
chr17 25746826 25746826 1 + G T LUAD 25746824 + 25746804 25746844 41 AGCTGGGCTGCCAGCAGACACGGGGCCTAAAGCCTGTTGGA AGCTGGGCTGCCAGCAGACACGTGGCCTAAAGCCTGTTGGA < 41bp 0.810168902804652 0.491497289789521 0.91700304 0.64976346 prediction 0.620337805609305 Functional Loss - TBC1D3P5 ENSG00000266433 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:25746824 chr17:25746826 . . 0 23 hm5C_associated_SNPs_53152 0 0 0 0 2 TBC1D3P5 chr17:25746796 3'AG 25746796 Downstream 31bp
chr17 25746826 25746826 1 + G T LUAD 25746824 + 25746804 25746844 41 AGCTGGGCTGCCAGCAGACACGGGGCCTAAAGCCTGTTGGA AGCTGGGCTGCCAGCAGACACGTGGCCTAAAGCCTGTTGGA < 41bp 0.810168902804652 0.491497289789521 0.91700304 0.64976346 prediction 0.620337805609305 Functional Loss - TBC1D3P5 ENSG00000266433 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:25746824 chr17:25746826 . . 0 23 hm5C_associated_SNPs_53152 0 0 0 0 2 TBC1D3P5 chr17:25746879 5'GT 25746879 Upstream 54bp
chr10 101507079 101507079 1 + G T LUAD 101507076 + 101507056 101507096 41 TCTTAACCTTGGGATTTGAACGCGTGTTGACCAGTGGATGT TCTTAACCTTGGGATTTGAACGCTTGTTGACCAGTGGATGT < 41bp 0.875417404682171 0.56524942230442 0.7094073 0.2902228 prediction 0.620335964755503 Functional Loss - CUTC ENSG00000119929 CDS Human protein_coding chr10:101507076 chr10:101507079 nonsynonymous SNV 0.689 1 24 hm5C_associated_SNPs_53153 0 0 1 1 2 CUTC chr10:101507014 3'AG 101507014 Downstream 66bp
chr10 101507079 101507079 1 + G T LUAD 101507076 + 101507056 101507096 41 TCTTAACCTTGGGATTTGAACGCGTGTTGACCAGTGGATGT TCTTAACCTTGGGATTTGAACGCTTGTTGACCAGTGGATGT < 41bp 0.875417404682171 0.56524942230442 0.7094073 0.2902228 prediction 0.620335964755503 Functional Loss - CUTC ENSG00000119929 CDS Human protein_coding chr10:101507076 chr10:101507079 nonsynonymous SNV 0.689 1 24 hm5C_associated_SNPs_53153 0 0 1 1 2 CUTC chr10:101507147 5'GT 101507147 Upstream 69bp
chr11 124006972 124006972 1 + G T rs2276054 124006970 + 124006950 124006990 41 TTTAGGGGTCAGAGATTAATCAGCTATGCCCAGCTGACCGG TTTAGGGGTCAGAGATTAATCATCTATGCCCAGCTGACCGG < 41bp 0.826892841230546 0.516726764919593 0.40843886 0.22982699 prediction 0.620332152621907 Functional Loss - VWA5A ENSG00000110002 CDS Human protein_coding chr11:124006970 chr11:124006972 nonsynonymous SNV 0.932 0 23 hm5C_associated_SNPs_53154 0 0 0 0 1 VWA5A chr11:124007000 5'GT 124007000 Upstream 29bp
chr16 50109559 50109559 1 + G T MESO 50109556 + 50109536 50109576 41 GTGCTACAGCATTGAACATGCTGGAATCAGCACTGCTTTCT GTGCTACAGCATTGAACATGCTGTAATCAGCACTGCTTTCT < 41bp 0.871297646627354 0.561132307027358 0.273225 0.06854424 prediction 0.620330679199993 Functional Loss - HEATR3 ENSG00000155393 CDS Human protein_coding chr16:50109556 chr16:50109559 stopgain 0.288 1 24 hm5C_associated_SNPs_53155 0 0 1 0 2 HEATR3 chr16:50109482 3'AG 50109482 Downstream 78bp
chr16 50109559 50109559 1 + G T MESO 50109556 + 50109536 50109576 41 GTGCTACAGCATTGAACATGCTGGAATCAGCACTGCTTTCT GTGCTACAGCATTGAACATGCTGTAATCAGCACTGCTTTCT < 41bp 0.871297646627354 0.561132307027358 0.273225 0.06854424 prediction 0.620330679199993 Functional Loss - HEATR3 ENSG00000155393 CDS Human protein_coding chr16:50109556 chr16:50109559 stopgain 0.288 1 24 hm5C_associated_SNPs_53155 0 0 1 0 2 HEATR3 chr16:50109622 5'GT 50109622 Upstream 64bp
chr10 135163665 135163665 1 + G T COAD 135163662 + 135163642 135163682 41 GCAGGTGCAGTCCCAGCACCCAAGGTAGGTGTGAGCCCCTC GCAGGTGCAGTCCCAGCACCCAATGTAGGTGTGAGCCCCTC < 41bp 0.881141714236136 0.570989736648176 0.89816904 0.39718342 prediction 0.620303955175921 Functional Loss - PRAP1 ENSG00000165828;ENSG00000198546 CDS Human other chr10:135163662 chr10:135163665 nonsynonymous SNV 0.302 1 24 hm5C_associated_SNPs_53156 0 0 0 0 1 PRAP1 chr10:135163665 5'GT 135163665 Upstream 1bp
chr2 47184044 47184044 1 + G T GBM 47184041 + 47184021 47184061 41 ATTACGTGGAGGGCTCATACCGAGATGCCATCAGCATGTAC ATTACGTGGAGGGCTCATACCGATATGCCATCAGCATGTAC < 41bp 0.870548003287602 0.560408057454912 0.85207605 0.10709748 prediction 0.62027989166538 Functional Loss - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47184041 chr2:47184044 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_53158 0 0 0 0 1 TTC7A chr2:47183978 3'AG 47183978 Downstream 67bp
chr6 110538977 110538977 1 + G T UCEC 110538975 + 110538955 110538995 41 TTCCTCAGTGCAGCCTATGACAGGTATCTTAAGCTCTGGGA TTCCTCAGTGCAGCCTATGACATGTATCTTAAGCTCTGGGA < 41bp 0.810128489991841 0.491679760671708 0.64254856 0.28762114 prediction 0.620256979983682 Functional Loss - CDC40 ENSG00000168438 CDS Human protein_coding chr6:110538975 chr6:110538977 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_53159 0 0 1 0 2 CDC40 chr6:110538905 3'AG 110538905 Downstream 73bp
chr6 110538977 110538977 1 + G T UCEC 110538975 + 110538955 110538995 41 TTCCTCAGTGCAGCCTATGACAGGTATCTTAAGCTCTGGGA TTCCTCAGTGCAGCCTATGACATGTATCTTAAGCTCTGGGA < 41bp 0.810128489991841 0.491679760671708 0.64254856 0.28762114 prediction 0.620256979983682 Functional Loss - CDC40 ENSG00000168438 CDS Human protein_coding chr6:110538975 chr6:110538977 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_53159 0 0 1 0 2 CDC40 chr6:110539006 5'GT 110539006 Upstream 30bp
chr4 90816505 90816505 1 + G T LIHC 90816502 + 90816482 90816522 41 CGCTAGCATCAAGTTCAATCCTGGAGCAGAATCAGTGGTCC CGCTAGCATCAAGTTCAATCCTGTAGCAGAATCAGTGGTCC < 41bp 0.86639035291945 0.55626543775788 0.14827198 0.047041833 prediction 0.62024983032314 Functional Loss - MMRN1 ENSG00000138722 CDS Human protein_coding chr4:90816502 chr4:90816505 nonsynonymous SNV 0.008 1 24 hm5C_associated_SNPs_53161 0 0 0 0 1 MMRN1 chr4:90816435 3'AG 90816435 Downstream 71bp
chr16 31309150 31309150 1 + G T LUAD 31309147 + 31309127 31309167 41 TTGGGGCAGCCCTAACAGTGCTGGGGGACGTAAATGGGGAC TTGGGGCAGCCCTAACAGTGCTGTGGGACGTAAATGGGGAC < 41bp 0.810114676298936 0.434426777198111 0.77745736 0.37723154 prediction 0.620229352597871 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31309147 chr16:31309150 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_53163 0 0 0 0 2 ITGAM chr16:31309063 3'AG 31309063 Downstream 88bp
chr16 31309150 31309150 1 + G T LUAD 31309147 + 31309127 31309167 41 TTGGGGCAGCCCTAACAGTGCTGGGGGACGTAAATGGGGAC TTGGGGCAGCCCTAACAGTGCTGTGGGACGTAAATGGGGAC < 41bp 0.810114676298936 0.434426777198111 0.77745736 0.37723154 prediction 0.620229352597871 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31309147 chr16:31309150 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_53163 0 0 0 0 2 ITGAM chr16:31309066 3'AG 31309066 Downstream 85bp
chr11 709421 709421 1 + G T LIHC 709419 + 709399 709439 41 CAAGACACCATGAGCCAGTCCGGGGCCGTGAGCTGCTGCCC CAAGACACCATGAGCCAGTCCGTGGCCGTGAGCTGCTGCCC < 41bp 0.832294172948285 0.522181840514966 0.9038396 0.11221513 prediction 0.620224664866638 Functional Loss - EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:709419 chr11:709421 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_53164 0 0 1 0 1 EPS8L2 chr11:709451 5'GT 709451 Upstream 31bp
chr3 10960063 10960063 1 + G T SKCM 10960061 + 10960041 10960081 41 CAGCGGCACCAGCTTCGTGGCTGGGTTTGCCATCTTCTCAG CAGCGGCACCAGCTTCGTGGCTTGGTTTGCCATCTTCTCAG < 41bp 0.810098647983813 0.487934659651968 0.23629257 0.020254314 prediction 0.620197295967627 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10960061 chr3:10960063 nonsynonymous SNV 0.920 5 23 hm5C_associated_SNPs_53165 0 0 1 0 2 SLC6A11 chr3:10960014 3'AG 10960014 Downstream 50bp
chr3 10960063 10960063 1 + G T SKCM 10960061 + 10960041 10960081 41 CAGCGGCACCAGCTTCGTGGCTGGGTTTGCCATCTTCTCAG CAGCGGCACCAGCTTCGTGGCTTGGTTTGCCATCTTCTCAG < 41bp 0.810098647983813 0.487934659651968 0.23629257 0.020254314 prediction 0.620197295967627 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10960061 chr3:10960063 nonsynonymous SNV 0.920 5 23 hm5C_associated_SNPs_53165 0 0 1 0 2 SLC6A11 chr3:10960138 5'GT 10960138 Upstream 76bp
chr3 119530454 119530454 1 + G T LGG 119530452 + 119530432 119530472 41 GCGGAAGAAAAGTGAACGGACAGGGACTCAGCCACTGGGAG GCGGAAGAAAAGTGAACGGACATGGACTCAGCCACTGGGAG < 41bp 0.810098405259811 0.466137026150356 0.8858416 0.26999837 prediction 0.620196810519622 Functional Loss - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119530452 chr3:119530454 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_53166 0 0 0 0 1 NR1I2 chr3:119530386 3'AG 119530386 Downstream 69bp
chr19 16986880 16986880 1 + G T SARC 16986877 + 16986857 16986897 41 TCCCGCCAGCTGCACCACCTCGTGAGCGATGACGTCTGCCT TCCCGCCAGCTGCACCACCTCGTTAGCGATGACGTCTGCCT < 41bp 0.810089716515224 0.437986279708869 0.87080616 0.3219574 prediction 0.620179433030448 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16986877 chr19:16986880 synonymous SNV . 0 24 hm5C_associated_SNPs_53168 0 0 1 0 1 SIN3B chr19:16986866 3'AG 16986866 Downstream 15bp
chr12 56631045 56631045 1 + G T LGG 56631043 + 56631023 56631063 41 GCAGTCCTGGGGGTGGGGCTCAGCCTGGGCCCTGTCCCCCT GCAGTCCTGGGGGTGGGGCTCATCCTGGGCCCTGTCCCCCT < 41bp 0.810056531852001 0.483266481903044 0.8374357 0.8070625 prediction 0.620113063704002 Functional Loss - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56631043 chr12:56631045 nonsynonymous SNV 0.989 4 23 hm5C_associated_SNPs_53171 0 0 1 0 1 SLC39A5 chr12:56631124 5'GT 56631124 Upstream 80bp
chr1 226019628 226019628 1 + A C UCEC 226019624 + 226019604 226019644 41 GGAAGAAGCAGGTGGAGATTCTCAACAGATACCCTCACTTC GGAAGAAGCAGGTGGAGATTCTCACCAGATACCCTCACTTC < 41bp 0.810006523659186 0.388450965728415 0.29588675 0.048832834 prediction 0.620013047318372 Functional Loss - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226019624 chr1:226019628 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_53173 0 0 1 0 1 EPHX1 chr1:226019660 5'GT 226019660 Upstream 33bp
chr19 6848051 6848051 1 + G T LUAD 6848049 + 6848029 6848069 41 GGGCAGGGGCAGAGAGCATCCTGGCCAACCGCTCGGACGGG GGGCAGGGGCAGAGAGCATCCTTGCCAACCGCTCGGACGGG < 41bp 0.810002264951092 0.484974476421053 0.41667554 0.18587273 prediction 0.620004529902185 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6848049 chr19:6848051 synonymous SNV . 0 23 hm5C_associated_SNPs_53174 0 0 0 0 2 VAV1 chr19:6848009 3'AG 6848009 Downstream 43bp
chr19 6848051 6848051 1 + G T LUAD 6848049 + 6848029 6848069 41 GGGCAGGGGCAGAGAGCATCCTGGCCAACCGCTCGGACGGG GGGCAGGGGCAGAGAGCATCCTTGCCAACCGCTCGGACGGG < 41bp 0.810002264951092 0.484974476421053 0.41667554 0.18587273 prediction 0.620004529902185 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6848049 chr19:6848051 synonymous SNV . 0 23 hm5C_associated_SNPs_53174 0 0 0 0 2 VAV1 chr19:6848125 5'GT 6848125 Upstream 75bp
chr3 129017247 129017247 1 + G T rs116232537 129017244 + 129017224 129017264 41 CCTGAGAACTGGGAGAAAGTCTGGGACAACTGGAGGCTGCT CCTGAGAACTGGGAGAAAGTCTGTGACAACTGGAGGCTGCT < 41bp 0.888528601359787 0.578530489209417 0.894175 0.14580852 prediction 0.619996224300741 Functional Loss - HMCES ENSG00000183624 CDS Human protein_coding chr3:129017244 chr3:129017247 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53175 0 0 1 0 1 HMCES chr3:129017197 3'AG 129017197 Downstream 51bp
chr16 89789568 89789568 1 + G T LUAD 89789565 + 89789545 89789585 41 GGTCGGTGCCCAGCCCCCAACAGGGGCAGAGGAGGGAGCGT GGTCGGTGCCCAGCCCCCAACAGTGGCAGAGGAGGGAGCGT < 41bp 0.878536621712631 0.568544582132396 0.9163027 0.4141255 prediction 0.61998407916047 Functional Loss - ZNF276 ENSG00000158805 CDS Human protein_coding chr16:89789565 chr16:89789568 nonsynonymous SNV 0.111 0 24 hm5C_associated_SNPs_53176 0 0 1 0 1 ZNF276 chr16:89789591 5'GT 89789591 Upstream 24bp
chr1 228333221 228333221 1 + G T LUSC 228333218 + 228333198 228333238 41 CTTCTCACCCCCAGGCATGTCGGGCCCCAGGCCTGTGGTGC CTTCTCACCCCCAGGCATGTCGGTCCCCAGGCCTGTGGTGC < 41bp 0.809941421576834 0.441395002597334 0.8457149 0.44343695 prediction 0.619882843153669 Functional Loss - GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333218 chr1:228333221 nonsynonymous SNV 0.085 1 24 hm5C_associated_SNPs_53183 0 0 1 0 1 GUK1 chr1:228333212 3'AG 228333212 Downstream 10bp
chr1 33745778 33745778 1 + G T UCEC 33745776 + 33745756 33745796 41 GAGCACTTCTGAGTCAAGCGCGGGCGCGGGCACGGGCACGG GAGCACTTCTGAGTCAAGCGCGTGCGCGGGCACGGGCACGG < 41bp 0.809919055249499 0.482929245175727 0.73158276 0.3213153 prediction 0.619838110498997 Functional Loss - ZNF362 ENSG00000160094 CDS Human protein_coding chr1:33745776 chr1:33745778 nonsynonymous SNV 0.282 3 23 hm5C_associated_SNPs_53184 0 0 0 0 1 ZNF362 chr1:33745725 3'AG 33745725 Downstream 54bp
chr15 58830623 58830623 1 + G T LUAD 58830621 + 58830601 58830641 41 TGCTCTTTGGAGAAACCAATCAGGGCTGTCAGATTCGAATC TGCTCTTTGGAGAAACCAATCATGGCTGTCAGATTCGAATC < 41bp 0.841896069678885 0.532001547083658 0.8848001 0.20241848 prediction 0.619789045190455 Functional Loss - LIPC ENSG00000166035 CDS Human protein_coding chr15:58830621 chr15:58830623 nonsynonymous SNV 0.278 2 23 hm5C_associated_SNPs_53186 0 0 0 0 2 LIPC chr15:58830532 3'AG 58830532 Downstream 92bp
chr15 58830623 58830623 1 + G T LUAD 58830621 + 58830601 58830641 41 TGCTCTTTGGAGAAACCAATCAGGGCTGTCAGATTCGAATC TGCTCTTTGGAGAAACCAATCATGGCTGTCAGATTCGAATC < 41bp 0.841896069678885 0.532001547083658 0.8848001 0.20241848 prediction 0.619789045190455 Functional Loss - LIPC ENSG00000166035 CDS Human protein_coding chr15:58830621 chr15:58830623 nonsynonymous SNV 0.278 2 23 hm5C_associated_SNPs_53186 0 0 0 0 2 LIPC chr15:58830716 5'GT 58830716 Upstream 94bp
chr19 1255693 1255693 1 + G T LUSC 1255691 + 1255671 1255711 41 GATCCGCATGTGCAAGCCCCCGGGTGAGTGGCCACCCTCGG GATCCGCATGTGCAAGCCCCCGTGTGAGTGGCCACCCTCGG < 41bp 0.834754928552459 0.524884021918607 0.9433383 0.42860052 prediction 0.619741813267703 Functional Loss - MIDN ENSG00000167470 CDS Human protein_coding chr19:1255691 chr19:1255693 nonsynonymous SNV 0.845 3 23 hm5C_associated_SNPs_53189 0 0 1 0 1 MIDN chr19:1255693 5'GT 1255693 Upstream 1bp
chr19 18700263 18700263 1 + G T UCEC 18700260 + 18700240 18700280 41 AGGGCCTGAGAGCCTGGGGGCGCGGCCTCAGGGTCCCCACA AGGGCCTGAGAGCCTGGGGGCGCTGCCTCAGGGTCCCCACA < 41bp 0.809869338563834 0.432935137373609 0.82842386 0.31615156 prediction 0.619738677127668 Functional Loss - C19orf60 ENSG00000006015 CDS Human protein_coding chr19:18700260 chr19:18700263 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_53190 0 0 1 0 1 C19orf60 chr19:18700223 3'AG 18700223 Downstream 41bp
chr7 102575035 102575035 1 + A C COAD 102575031 + 102575011 102575051 41 GGAACAATTGGACCCGAAACCCCAAGTGTCAGGGAGACCCC GGAACAATTGGACCCGAAACCCCACGTGTCAGGGAGACCCC < 41bp 0.809863122435325 0.426413336998859 0.21120483 0.1843757 prediction 0.61972624487065 Functional Loss - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102575031 chr7:102575035 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_53191 0 0 0 0 1 LRRC17 chr7:102575132 5'GT 102575132 Upstream 98bp
chr8 104225259 104225259 1 + G T CESC 104225256 + 104225236 104225276 41 GAGACCCAGTGCCCAAATCCCCAGAGCCTCAGCTCAGGCCC GAGACCCAGTGCCCAAATCCCCATAGCCTCAGCTCAGGCCC < 41bp 0.809844185615192 0.443637524314008 0.3114243 0.14166757 prediction 0.619688371230384 Functional Loss - BAALC ENSG00000164929 CDS Human protein_coding chr8:104225256 chr8:104225259 nonsynonymous SNV 0.697 2 24 hm5C_associated_SNPs_53193 0 0 0 0 1 BAALC chr8:104225313 5'GT 104225313 Upstream 55bp
chr19 55220466 55220466 1 + G T LUAD 55220463 + 55220443 55220483 41 GCCCCATGACCCTCTGGTGCCAGGGGACCCTGGATACCCAG GCCCCATGACCCTCTGGTGCCAGTGGACCCTGGATACCCAG < 41bp 0.828896858995846 0.519055084741419 0.9450173 0.87925625 prediction 0.619683548508853 Functional Loss - LILRP2 ENSG00000170858 ncRNA_exonic Human transcribed_processed_pseudogene chr19:55220463 chr19:55220466 . . 0 24 hm5C_associated_SNPs_53194 0 0 0 0 1 LILRP2 chr19:55220386 3'AG 55220386 Downstream 81bp
chr1 15970122 15970122 1 + A C UCEC 15970118 + 15970098 15970138 41 TTGCCAAAGGAGTGGGCACCCAGAAGATTATTGGAAGGGTA TTGCCAAAGGAGTGGGCACCCAGACGATTATTGGAAGGGTA < 41bp 0.89060638168317 0.580766197189052 0.73370457 0.6285772 prediction 0.619680368988235 Functional Loss - DDI2 ENSG00000197312 CDS Human protein_coding chr1:15970118 chr1:15970122 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_53195 0 0 1 0 1 DDI2 chr1:15970145 5'GT 15970145 Upstream 24bp
chr12 50492748 50492748 1 + G T UCEC 50492745 + 50492725 50492765 41 CTTAGGTGCAGCAGAGACGACAAGAATTAGAGCAAGCCCTG CTTAGGTGCAGCAGAGACGACAATAATTAGAGCAAGCCCTG < 41bp 0.809766971943073 0.454547333504528 0.7837502 0.86117905 prediction 0.619533943886145 Functional Loss - SMARCD1 ENSG00000066117 CDS Human protein_coding chr12:50492745 chr12:50492748 stopgain 1.000 1 24 hm5C_associated_SNPs_53200 0 0 1 0 1 SMARCD1 chr12:50492730 3'AG 50492730 Downstream 19bp
chrX 30739058 30739058 1 + G T HNSC 30739055 + 30739035 30739075 41 TCGGCGTATGGAGTCTCGAACCCGAGGATTTGTCTGCCGTC TCGGCGTATGGAGTCTCGAACCCTAGGATTTGTCTGCCGTC < 41bp 0.809756830471431 0.448076232745701 0.17148238 0.05930078 prediction 0.619513660942863 Functional Loss - GK ENSG00000198814 CDS Human protein_coding chrX:30739055 chrX:30739058 stopgain 0.896 1 24 hm5C_associated_SNPs_53202 0 0 0 0 1 GK chrX:30738969 3'AG 30738969 Downstream 90bp
chr1 111783975 111783975 1 + G T COAD 111783972 + 111783952 111783992 41 TGCCAGTTCCTGAAAGGAGCCAAGATCACGCGGCTCCAGGA TGCCAGTTCCTGAAAGGAGCCAATATCACGCGGCTCCAGGA < 41bp 0.878140647349063 0.56839035808002 0.18026435 0.027227938 prediction 0.619500578538086 Functional Loss - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111783972 chr1:111783975 nonsynonymous SNV 0.208 0 24 hm5C_associated_SNPs_53204 0 0 0 0 2 CHI3L2 chr1:111783949 3'AG 111783949 Downstream 27bp
chr1 111783975 111783975 1 + G T COAD 111783972 + 111783952 111783992 41 TGCCAGTTCCTGAAAGGAGCCAAGATCACGCGGCTCCAGGA TGCCAGTTCCTGAAAGGAGCCAATATCACGCGGCTCCAGGA < 41bp 0.878140647349063 0.56839035808002 0.18026435 0.027227938 prediction 0.619500578538086 Functional Loss - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111783972 chr1:111783975 nonsynonymous SNV 0.208 0 24 hm5C_associated_SNPs_53204 0 0 0 0 2 CHI3L2 chr1:111784065 5'GT 111784065 Upstream 91bp
chr5 35659183 35659183 1 + G T LUAD 35659180 + 35659160 35659200 41 CGGCAGTCCCAGCAGGAGCGCAGGATTGCCGTGCAGCTCAT CGGCAGTCCCAGCAGGAGCGCAGTATTGCCGTGCAGCTCAT < 41bp 0.865193776862537 0.555475734139903 0.8456657 0.28666955 prediction 0.619436085445267 Functional Loss - SPEF2 ENSG00000152582 CDS Human protein_coding chr5:35659180 chr5:35659183 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53206 0 0 1 0 1 SPEF2 chr5:35659121 3'AG 35659121 Downstream 63bp
chr1 158064489 158064489 1 + G T STAD 158064487 + 158064467 158064507 41 CATGAAGACCGCCCGTCTTCCAGGGCAGTGCTCTATGCTGA CATGAAGACCGCCCGTCTTCCATGGCAGTGCTCTATGCTGA < 41bp 0.826093241550657 0.51644693536367 0.92006695 0.23095703 prediction 0.619292612373974 Functional Loss - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158064487 chr1:158064489 nonsynonymous SNV 0.381 2 23 hm5C_associated_SNPs_53211 0 0 0 0 1 KIRREL chr1:158064434 3'AG 158064434 Downstream 56bp
chr8 20841529 20841529 1 + G T rs541828981 20841526 + 20841506 20841546 41 TGTAAGCCAAGGAAAGAGGCCTGGAACAGATCCTGACCTTA TGTAAGCCAAGGAAAGAGGCCTGTAACAGATCCTGACCTTA < 41bp 0.809644672053398 0.491512944183895 0.21422973 0.14481449 prediction 0.619289344106795 Functional Loss - LINC02153 ENSG00000253199 ncRNA_exonic Human lincRNA chr8:20841526 chr8:20841529 . . 0 24 hm5C_associated_SNPs_53212 0 0 0 0 1 LINC02153 chr8:20841617 5'GT 20841617 Upstream 89bp
chr5 148627460 148627460 1 + A T COAD 148627456 + 148627436 148627476 41 CCACCAGCAGCCGGGAAGCCCTGCACACAGCTGGCTATGAG CCACCAGCAGCCGGGAAGCCCTGCTCACAGCTGGCTATGAG < 41bp 0.809640890732891 0.488306590052398 0.06549579 0.06563011 prediction 0.619281781465783 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148627456 chr5:148627460 nonsynonymous SNV 0.992 2 25 hm5C_associated_SNPs_53213 0 0 0 0 1 ABLIM3 chr5:148627492 5'GT 148627492 Upstream 33bp
chr7 128441554 128441554 1 + G T LIHC 128441552 + 128441532 128441572 41 TTTAGGTCTCTCAGATTACTCTGGGTTACAAGGTATGAGAG TTTAGGTCTCTCAGATTACTCTTGGTTACAAGGTATGAGAG < 41bp 0.815992860670011 0.506363327634439 0.90976524 0.24219993 prediction 0.619259066071144 Functional Loss - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128441552 chr7:128441554 nonsynonymous SNV 0.986 3 23 hm5C_associated_SNPs_53214 0 0 0 0 1 CCDC136 chr7:128441563 5'GT 128441563 Upstream 10bp
chr7 150768232 150768232 1 + G T LUSC 150768230 + 150768210 150768250 41 GCCATCAACGCCTTCCTGGACTGCAGCGTGGTGCTGCCGCC GCCATCAACGCCTTCCTGGACTTCAGCGTGGTGCTGCCGCC < 41bp 0.809621340835056 0.489758982079347 0.20198312 0.06922901 prediction 0.619242681670112 Functional Loss - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150768230 chr7:150768232 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_53215 0 0 1 0 1 SLC4A2 chr7:150768159 3'AG 150768159 Downstream 74bp
chr14 67843242 67843242 1 + G T UCEC 67843239 + 67843219 67843259 41 AGCCTATTCCAGAGGACTGCCTGGGTCTTTGATGACAAGTA AGCCTATTCCAGAGGACTGCCTGTGTCTTTGATGACAAGTA < 41bp 0.809620441158221 0.446947015596029 0.3352461 0.038978547 prediction 0.619240882316441 Functional Loss - EIF2S1 ENSG00000134001 CDS Human protein_coding chr14:67843239 chr14:67843242 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53216 0 0 1 0 2 EIF2S1 chr14:67843156 3'AG 67843156 Downstream 87bp
chr14 67843242 67843242 1 + G T UCEC 67843239 + 67843219 67843259 41 AGCCTATTCCAGAGGACTGCCTGGGTCTTTGATGACAAGTA AGCCTATTCCAGAGGACTGCCTGTGTCTTTGATGACAAGTA < 41bp 0.809620441158221 0.446947015596029 0.3352461 0.038978547 prediction 0.619240882316441 Functional Loss - EIF2S1 ENSG00000134001 CDS Human protein_coding chr14:67843239 chr14:67843242 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53216 0 0 1 0 2 EIF2S1 chr14:67843307 5'GT 67843307 Upstream 66bp
chr7 27832703 27832703 1 + G T LUAD 27832700 + 27832680 27832720 41 TCTAGGACAAGACTGATACACTGGAACACGAACTAAGAAGA TCTAGGACAAGACTGATACACTGTAACACGAACTAAGAAGA < 41bp 0.839659075535432 0.530046028895797 0.69701624 0.17737705 prediction 0.61922609327927 Functional Loss - TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27832700 chr7:27832703 stopgain 0.991 1 24 hm5C_associated_SNPs_53219 0 0 1 0 1 TAX1BP1 chr7:27832685 3'AG 27832685 Downstream 19bp
chr19 45183600 45183600 1 + G T LUAD 45183597 + 45183577 45183617 41 AGCCAGAATTGGGCCCTGCTCATGATGCTGGTAAGGCGGGA AGCCAGAATTGGGCCCTGCTCATTATGCTGGTAAGGCGGGA < 41bp 0.809612148236508 0.44637045282926 0.369629 0.3095554 prediction 0.619224296473015 Functional Loss - CEACAM19 ENSG00000186567 CDS Human protein_coding chr19:45183597 chr19:45183600 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_53220 0 0 0 0 2 CEACAM19 chr19:45183560 3'AG 45183560 Downstream 41bp
chr19 45183600 45183600 1 + G T LUAD 45183597 + 45183577 45183617 41 AGCCAGAATTGGGCCCTGCTCATGATGCTGGTAAGGCGGGA AGCCAGAATTGGGCCCTGCTCATTATGCTGGTAAGGCGGGA < 41bp 0.809612148236508 0.44637045282926 0.369629 0.3095554 prediction 0.619224296473015 Functional Loss - CEACAM19 ENSG00000186567 CDS Human protein_coding chr19:45183597 chr19:45183600 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_53220 0 0 0 0 2 CEACAM19 chr19:45183606 5'GT 45183606 Upstream 7bp
chr6 130378584 130378584 1 + G T LUSC 130378582 + 130378562 130378602 41 AAAGGAAAGAAAGCGTGGTGCTGGGCATCCTACCTGGAAGA AAAGGAAAGAAAGCGTGGTGCTTGGCATCCTACCTGGAAGA < 41bp 0.809590972160101 0.485218074039609 0.4613045 0.1948564 prediction 0.619181944320202 Functional Loss - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130378582 chr6:130378584 nonsynonymous SNV 0.994 5 23 hm5C_associated_SNPs_53223 0 0 1 0 2 L3MBTL3 chr6:130378551 3'AG 130378551 Downstream 34bp
chr6 130378584 130378584 1 + G T LUSC 130378582 + 130378562 130378602 41 AAAGGAAAGAAAGCGTGGTGCTGGGCATCCTACCTGGAAGA AAAGGAAAGAAAGCGTGGTGCTTGGCATCCTACCTGGAAGA < 41bp 0.809590972160101 0.485218074039609 0.4613045 0.1948564 prediction 0.619181944320202 Functional Loss - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130378582 chr6:130378584 nonsynonymous SNV 0.994 5 23 hm5C_associated_SNPs_53223 0 0 1 0 2 L3MBTL3 chr6:130378642 5'GT 130378642 Upstream 59bp
chr6 25771165 25771165 1 + G T LUAD 25771162 + 25771142 25771182 41 TCTTCTGTTCAGGGTCAATGCTGGGGTCCTTCATTGTTCTA TCTTCTGTTCAGGGTCAATGCTGTGGTCCTTCATTGTTCTA < 41bp 0.873198685729257 0.563644653881121 0.46309337 0.059865415 prediction 0.619108063696272 Functional Loss - SLC17A4 ENSG00000146039 CDS Human protein_coding chr6:25771162 chr6:25771165 nonsynonymous SNV 0.011 4 24 hm5C_associated_SNPs_53228 0 0 0 0 1 SLC17A4 chr6:25771240 5'GT 25771240 Upstream 76bp
chr12 53513037 53513037 1 + G T UCEC 53513035 + 53513015 53513055 41 TATCCTGCATGCCACGTTGCCAGGTGAGCCAACTAAGGTAG TATCCTGCATGCCACGTTGCCATGTGAGCCAACTAAGGTAG < 41bp 0.809553527772878 0.479464564750841 0.91304135 0.89321965 prediction 0.619107055545755 Functional Loss - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53513035 chr12:53513037 nonsynonymous SNV 0.990 4 23 hm5C_associated_SNPs_53229 0 0 0 7 1 SOAT2 chr12:53513037 5'GT 53513037 Upstream 1bp
chr6 32007878 32007878 1 + G T LUAD 32007875 + 32007855 32007895 41 AAGAGGGCTCTGGACAGCTCCTGGAAGGGCACGTGCACATG AAGAGGGCTCTGGACAGCTCCTGTAAGGGCACGTGCACATG < 41bp 0.811058601303247 0.501505557839279 0.40270224 0.16947576 prediction 0.619106086927935 Functional Loss - CYP21A2 ENSG00000231852 CDS Human protein_coding chr6:32007875 chr6:32007878 stopgain 0.223 1 24 hm5C_associated_SNPs_53230 0 0 0 0 1 CYP21A2 chr6:32007782 3'AG 32007782 Downstream 97bp
chr20 17716348 17716348 1 + G T COAD 17716345 + 17716325 17716365 41 GGACAATTCCTTCTGATGCACAAGAATGAAGCCGAGTTTCA GGACAATTCCTTCTGATGCACAATAATGAAGCCGAGTTTCA < 41bp 0.809550805948008 0.433264427342114 0.2160531 0.0916383 prediction 0.619101611896017 Functional Loss - BANF2 ENSG00000125888 CDS Human protein_coding chr20:17716345 chr20:17716348 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_53231 0 0 0 0 1 BANF2 chr20:17716310 3'AG 17716310 Downstream 39bp
chr16 8735041 8735041 1 + G T STAD 8735039 + 8735019 8735059 41 GCTGAAGGACGACCTCTGCACAGGTGTGTGTTTCTCTCGGA GCTGAAGGACGACCTCTGCACATGTGTGTGTTTCTCTCGGA < 41bp 0.830113112165043 0.520563807722272 0.73143846 0.22093946 prediction 0.619098608885543 Functional Loss - METTL22 ENSG00000067365 CDS Human protein_coding chr16:8735039 chr16:8735041 nonsynonymous SNV 0.969 4 23 hm5C_associated_SNPs_53232 0 0 1 0 2 METTL22 chr16:8734988 3'AG 8734988 Downstream 54bp
chr16 8735041 8735041 1 + G T STAD 8735039 + 8735019 8735059 41 GCTGAAGGACGACCTCTGCACAGGTGTGTGTTTCTCTCGGA GCTGAAGGACGACCTCTGCACATGTGTGTGTTTCTCTCGGA < 41bp 0.830113112165043 0.520563807722272 0.73143846 0.22093946 prediction 0.619098608885543 Functional Loss - METTL22 ENSG00000067365 CDS Human protein_coding chr16:8735039 chr16:8735041 nonsynonymous SNV 0.969 4 23 hm5C_associated_SNPs_53232 0 0 1 0 2 METTL22 chr16:8735041 5'GT 8735041 Upstream 1bp
chr2 73446061 73446061 1 + G T HNSC 73446059 + 73446039 73446079 41 CGTAGAACGGCCCCTGGTGGCTGCACAGTTTCTCTGGAATG CGTAGAACGGCCCCTGGTGGCTTCACAGTTTCTCTGGAATG < 41bp 0.816619826703932 0.50710113275137 0.2935686 0.21481761 prediction 0.619037387905124 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73446059 chr2:73446061 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_53235 0 0 1 0 2 SMYD5 chr2:73445989 3'AG 73445989 Downstream 73bp
chr2 73446061 73446061 1 + G T HNSC 73446059 + 73446039 73446079 41 CGTAGAACGGCCCCTGGTGGCTGCACAGTTTCTCTGGAATG CGTAGAACGGCCCCTGGTGGCTTCACAGTTTCTCTGGAATG < 41bp 0.816619826703932 0.50710113275137 0.2935686 0.21481761 prediction 0.619037387905124 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73446059 chr2:73446061 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_53235 0 0 1 0 2 SMYD5 chr2:73446097 5'GT 73446097 Upstream 37bp
chr16 56678084 56678084 1 + G T UCEC 56678081 + 56678061 56678101 41 GAGTACAAATGCACCTCCTGCAAGAAGAGTGAGTGTGGGGC GAGTACAAATGCACCTCCTGCAATAAGAGTGAGTGTGGGGC < 41bp 0.809512604328496 0.447090130168139 0.32161367 0.054279298 prediction 0.619025208656993 Functional Loss - MT1DP ENSG00000205361 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:56678081 chr16:56678084 . . 0 24 hm5C_associated_SNPs_53237 0 0 0 6 1 MT1DP chr16:56678023 3'AG 56678023 Downstream 62bp
chr19 6750343 6750343 1 + G T BLCA 6750341 + 6750321 6750361 41 GAAAGTCGAGTCCTTAGCAACCGGGGAGACAGCCTGAGCCG GAAAGTCGAGTCCTTAGCAACCTGGGAGACAGCCTGAGCCG < 41bp 0.838229618605719 0.528723346123364 0.9131447 0.41958487 prediction 0.619012544964711 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6750341 chr19:6750343 nonsynonymous SNV 0.699 3 23 hm5C_associated_SNPs_53238 0 0 1 0 2 TRIP10 chr19:6750303 3'AG 6750303 Downstream 41bp
chr19 6750343 6750343 1 + G T BLCA 6750341 + 6750321 6750361 41 GAAAGTCGAGTCCTTAGCAACCGGGGAGACAGCCTGAGCCG GAAAGTCGAGTCCTTAGCAACCTGGGAGACAGCCTGAGCCG < 41bp 0.838229618605719 0.528723346123364 0.9131447 0.41958487 prediction 0.619012544964711 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6750341 chr19:6750343 nonsynonymous SNV 0.699 3 23 hm5C_associated_SNPs_53238 0 0 1 0 2 TRIP10 chr19:6750442 5'GT 6750442 Upstream 100bp
chr4 128565128 128565128 1 + G T SKCM 128565125 + 128565105 128565145 41 CAAGTGGAGCTGGAGAAGAACCGGAAAGCAGGGTGATGGAG CAAGTGGAGCTGGAGAAGAACCGTAAAGCAGGGTGATGGAG < 41bp 0.809494551374467 0.445910581789128 0.8873876 0.34716344 prediction 0.618989102748934 Functional Loss - INTU ENSG00000164066 CDS Human protein_coding chr4:128565125 chr4:128565128 nonsynonymous SNV 0.062 0 24 hm5C_associated_SNPs_53240 0 0 1 0 1 INTU chr4:128565211 5'GT 128565211 Upstream 84bp
chr1 109440160 109440160 1 + G T SKCM 109440157 + 109440137 109440177 41 AAGCGAAAGCTAGTGGTAATCTGGGAAACACCTTAAAAGTT AAGCGAAAGCTAGTGGTAATCTGTGAAACACCTTAAAAGTT < 41bp 0.864746114352486 0.55525832530603 0.8910565 0.3619517 prediction 0.618975578092913 Functional Loss - GPSM2 ENSG00000121957 CDS Human protein_coding chr1:109440157 chr1:109440160 stopgain 1.000 1 24 hm5C_associated_SNPs_53241 0 0 1 0 2 GPSM2 chr1:109440114 3'AG 109440114 Downstream 47bp
chr1 109440160 109440160 1 + G T SKCM 109440157 + 109440137 109440177 41 AAGCGAAAGCTAGTGGTAATCTGGGAAACACCTTAAAAGTT AAGCGAAAGCTAGTGGTAATCTGTGAAACACCTTAAAAGTT < 41bp 0.864746114352486 0.55525832530603 0.8910565 0.3619517 prediction 0.618975578092913 Functional Loss - GPSM2 ENSG00000121957 CDS Human protein_coding chr1:109440157 chr1:109440160 stopgain 1.000 1 24 hm5C_associated_SNPs_53241 0 0 1 0 2 GPSM2 chr1:109440249 5'GT 109440249 Upstream 90bp
chr19 35173736 35173736 1 + G T UCEC 35173733 + 35173713 35173753 41 CTCATGAAGAGTGGGCATGCCTAGATTCTGCTCAGAGGGAC CTCATGAAGAGTGGGCATGCCTATATTCTGCTCAGAGGGAC < 41bp 0.864751129525658 0.555265949918934 0.06884381 0.13176009 prediction 0.618970359213448 Functional Loss - ZNF302 ENSG00000089335 CDS Human protein_coding chr19:35173733 chr19:35173736 nonsynonymous SNV 0.760 3 24 hm5C_associated_SNPs_53242 0 0 0 0 2 ZNF302 chr19:35173682 3'AG 35173682 Downstream 55bp
chr19 35173736 35173736 1 + G T UCEC 35173733 + 35173713 35173753 41 CTCATGAAGAGTGGGCATGCCTAGATTCTGCTCAGAGGGAC CTCATGAAGAGTGGGCATGCCTATATTCTGCTCAGAGGGAC < 41bp 0.864751129525658 0.555265949918934 0.06884381 0.13176009 prediction 0.618970359213448 Functional Loss - ZNF302 ENSG00000089335 CDS Human protein_coding chr19:35173733 chr19:35173736 nonsynonymous SNV 0.760 3 24 hm5C_associated_SNPs_53242 0 0 0 0 2 ZNF302 chr19:35173802 5'GT 35173802 Upstream 67bp
chrX 86919819 86919819 1 + G T UCEC 86919816 + 86919796 86919836 41 TGGCACCTCTGAGTGTTCCTCGAGATGCTGTTGCTGTGTGC TGGCACCTCTGAGTGTTCCTCGATATGCTGTTGCTGTGTGC < 41bp 0.809473524654132 0.45085710090947 0.9212861 0.62765795 prediction 0.618947049308265 Functional Loss - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86919816 chrX:86919819 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53244 0 0 0 0 1 KLHL4 chrX:86919764 3'AG 86919764 Downstream 56bp
chr11 64085785 64085785 1 + A C rs7938623 64085781 + 64085761 64085801 41 CTGCGGCAGCGGCAGCAAGACGGTACAGTGAAGGAGAGTGG CTGCGGCAGCGGCAGCAAGACGGTCCAGTGAAGGAGAGTGG < 41bp 0.809458209202345 0.453144594491111 0.22486356 0.3257162 prediction 0.61891641840469 Functional Loss - PRDX5 ENSG00000126432 CDS Human protein_coding chr11:64085781 chr11:64085785 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_53248 0 0 1 0 1 PRDX5 chr11:64085858 5'GT 64085858 Upstream 74bp
chr1 3680038 3680038 1 + G T STAD 3680036 + 3680016 3680056 41 GACCAGATACTCCCTTGCAACAGGTAGGGCCTCGGCGGGGG GACCAGATACTCCCTTGCAACATGTAGGGCCTCGGCGGGGG < 41bp 0.82944971924254 0.520035106455676 0.7259426 0.25377375 prediction 0.618829225573729 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3680036 chr1:3680038 stopgain 0.415 1 23 hm5C_associated_SNPs_53252 0 0 0 0 1 CCDC27 chr1:3680038 5'GT 3680038 Upstream 1bp
chrX 102841679 102841679 1 + G T UCEC 102841676 + 102841656 102841696 41 TGGAAAATGAAGAACAGCCACAAGACGAGAGAAAGCCAGAA TGGAAAATGAAGAACAGCCACAATACGAGAGAAAGCCAGAA < 41bp 0.809411219156678 0.47051367753396 0.7712424 0.3282752 prediction 0.618822438313356 Functional Loss - TCEAL4 ENSG00000133142 CDS Human protein_coding chrX:102841676 chrX:102841679 nonsynonymous SNV 0.971 1 24 hm5C_associated_SNPs_53253 0 0 1 0 1 TCEAL4 chrX:102841582 3'AG 102841582 Downstream 98bp
chr7 48141467 48141467 1 + G T HNSC 48141465 + 48141445 48141485 41 TCCCGGATGAAAGCCTTCATCAGGTGCGTTGGTGCAGAGCT TCCCGGATGAAAGCCTTCATCATGTGCGTTGGTGCAGAGCT < 41bp 0.827087706256787 0.517678024132597 0.9233594 0.7657943 prediction 0.618819364248379 Functional Loss - UPP1 ENSG00000183696 CDS Human protein_coding chr7:48141465 chr7:48141467 nonsynonymous SNV 0.173 1 23 hm5C_associated_SNPs_53254 0 0 1 0 2 UPP1 chr7:48141421 3'AG 48141421 Downstream 47bp
chr7 48141467 48141467 1 + G T HNSC 48141465 + 48141445 48141485 41 TCCCGGATGAAAGCCTTCATCAGGTGCGTTGGTGCAGAGCT TCCCGGATGAAAGCCTTCATCATGTGCGTTGGTGCAGAGCT < 41bp 0.827087706256787 0.517678024132597 0.9233594 0.7657943 prediction 0.618819364248379 Functional Loss - UPP1 ENSG00000183696 CDS Human protein_coding chr7:48141465 chr7:48141467 nonsynonymous SNV 0.173 1 23 hm5C_associated_SNPs_53254 0 0 1 0 2 UPP1 chr7:48141467 5'GT 48141467 Upstream 1bp
chr6 35254147 35254147 1 + G T LUSC 35254145 + 35254125 35254165 41 CCTGTGCAGCTGGAAGATGGCAGCATGGCTTACATACACCG CCTGTGCAGCTGGAAGATGGCATCATGGCTTACATACACCG < 41bp 0.809349410558272 0.496834852878491 0.28823066 0.17252237 prediction 0.618698821116544 Functional Loss - ZNF76 ENSG00000065029 CDS Human protein_coding chr6:35254145 chr6:35254147 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_53257 0 0 1 0 2 ZNF76 chr6:35254099 3'AG 35254099 Downstream 49bp
chr6 35254147 35254147 1 + G T LUSC 35254145 + 35254125 35254165 41 CCTGTGCAGCTGGAAGATGGCAGCATGGCTTACATACACCG CCTGTGCAGCTGGAAGATGGCATCATGGCTTACATACACCG < 41bp 0.809349410558272 0.496834852878491 0.28823066 0.17252237 prediction 0.618698821116544 Functional Loss - ZNF76 ENSG00000065029 CDS Human protein_coding chr6:35254145 chr6:35254147 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_53257 0 0 1 0 2 ZNF76 chr6:35254176 5'GT 35254176 Upstream 30bp
chr1 109707275 109707275 1 + G T SKCM 109707273 + 109707253 109707293 41 GCCTCTCAGCCAACATGGAGCTGGATGACAGTGCTGCTGAG GCCTCTCAGCCAACATGGAGCTTGATGACAGTGCTGCTGAG < 41bp 0.809306578290869 0.492753637417261 0.50431484 0.1399231 prediction 0.618613156581737 Functional Loss - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109707273 chr1:109707275 synonymous SNV . 0 23 hm5C_associated_SNPs_53263 0 0 0 0 1 KIAA1324 chr1:109707313 5'GT 109707313 Upstream 39bp
chr12 57971529 57971529 1 + G T UCEC 57971527 + 57971507 57971547 41 AGCGACATGAGCAGTCCAAGCAGGACCTCAAGGGTCTGGAG AGCGACATGAGCAGTCCAAGCATGACCTCAAGGGTCTGGAG < 41bp 0.841102344692193 0.531797302286413 0.7792884 0.18331942 prediction 0.61861008481156 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57971527 chr12:57971529 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_53264 0 0 1 0 2 KIF5A chr12:57971496 3'AG 57971496 Downstream 34bp
chr12 57971529 57971529 1 + G T UCEC 57971527 + 57971507 57971547 41 AGCGACATGAGCAGTCCAAGCAGGACCTCAAGGGTCTGGAG AGCGACATGAGCAGTCCAAGCATGACCTCAAGGGTCTGGAG < 41bp 0.841102344692193 0.531797302286413 0.7792884 0.18331942 prediction 0.61861008481156 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57971527 chr12:57971529 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_53264 0 0 1 0 2 KIF5A chr12:57971556 5'GT 57971556 Upstream 28bp
chr16 55360345 55360345 1 + G T rs200373286 55360343 + 55360323 55360363 41 TCCACCCCAGCGCCCGCTCTCTGCTGCGCACCCTACGATAG TCCACCCCAGCGCCCGCTCTCTTCTGCGCACCCTACGATAG < 41bp 0.838856131085716 0.529560048463048 0.08891696 0.040880293 prediction 0.618592165245337 Functional Loss - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55360343 chr16:55360345 nonsynonymous SNV 0.889 2 23 hm5C_associated_SNPs_53266 0 0 0 0 1 IRX6 chr16:55360248 3'AG 55360248 Downstream 98bp
chr7 55229240 55229240 1 + G T ESCA 55229238 + 55229218 55229258 41 TTGTGCTCCCCCGAGGGCTGCTGGGGCCCGGAGCCCAGGGA TTGTGCTCCCCCGAGGGCTGCTTGGGCCCGGAGCCCAGGGA < 41bp 0.809282552613669 0.482743969688769 0.90051734 0.54744434 prediction 0.618565105227338 Functional Loss - EGFR ENSG00000146648 CDS Human protein_coding chr7:55229238 chr7:55229240 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_53268 0 0 1 0 2 EGFR chr7:55229192 3'AG 55229192 Downstream 49bp
chr7 55229240 55229240 1 + G T ESCA 55229238 + 55229218 55229258 41 TTGTGCTCCCCCGAGGGCTGCTGGGGCCCGGAGCCCAGGGA TTGTGCTCCCCCGAGGGCTGCTTGGGCCCGGAGCCCAGGGA < 41bp 0.809282552613669 0.482743969688769 0.90051734 0.54744434 prediction 0.618565105227338 Functional Loss - EGFR ENSG00000146648 CDS Human protein_coding chr7:55229238 chr7:55229240 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_53268 0 0 1 0 2 EGFR chr7:55229324 5'GT 55229324 Upstream 85bp
chr2 174228038 174228038 1 + G T SARC 174228036 + 174228016 174228056 41 CAGGGTGGCGATGAAGTTTCCAGCGCGGAGTACCAGGGGAG CAGGGTGGCGATGAAGTTTCCATCGCGGAGTACCAGGGGAG < 41bp 0.835434808738467 0.526171082577039 0.6393727 0.40931106 prediction 0.618527452322854 Functional Loss - CDCA7 ENSG00000144354 CDS Human protein_coding chr2:174228036 chr2:174228038 nonsynonymous SNV 0.155 0 23 hm5C_associated_SNPs_53269 0 0 1 0 1 CDCA7 chr2:174227954 3'AG 174227954 Downstream 85bp
chr7 63709511 63709511 1 + G T LUSC 63709508 + 63709488 63709528 41 GCAGATTTATGGCTAAAAGACCGGGATCCCCTGGAAGCCGA GCAGATTTATGGCTAAAAGACCGTGATCCCCTGGAAGCCGA < 41bp 0.868165442308919 0.558923281299248 0.8259956 0.13554367 prediction 0.618484322019341 Functional Loss - ZNF679 ENSG00000197123 CDS Human protein_coding chr7:63709508 chr7:63709511 stopgain 0.000 0 24 hm5C_associated_SNPs_53271 0 0 0 0 1 ZNF679 chr7:63709534 5'GT 63709534 Upstream 24bp
chr7 141352593 141352593 1 + G T UCEC 141352591 + 141352571 141352611 41 ATTCTCTTCTCCCCAGGGAGCAGGGGGCTCTTTTAGCATTG ATTCTCTTCTCCCCAGGGAGCATGGGGCTCTTTTAGCATTG < 41bp 0.80923714954259 0.489200423317895 0.9115528 0.44890383 prediction 0.618474299085179 Functional Loss - AGK ENSG00000006530 CDS Human protein_coding chr7:141352591 chr7:141352593 nonsynonymous SNV 0.657 1 23 hm5C_associated_SNPs_53272 0 0 1 0 1 AGK chr7:141352587 3'AG 141352587 Downstream 7bp
chr10 89469006 89469006 1 + G T UCEC 89469003 + 89468983 89469023 41 TATCAGGCCCACCATGTGAGCAGGAATAAGAGAGGGCAAGT TATCAGGCCCACCATGTGAGCAGTAATAAGAGAGGGCAAGT < 41bp 0.871444345485908 0.562225751080134 0.8956371 0.38033062 prediction 0.618437188811549 Functional Loss - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89469003 chr10:89469006 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53273 0 0 1 0 2 PAPSS2 chr10:89468953 3'AG 89468953 Downstream 54bp
chr10 89469006 89469006 1 + G T UCEC 89469003 + 89468983 89469023 41 TATCAGGCCCACCATGTGAGCAGGAATAAGAGAGGGCAAGT TATCAGGCCCACCATGTGAGCAGTAATAAGAGAGGGCAAGT < 41bp 0.871444345485908 0.562225751080134 0.8956371 0.38033062 prediction 0.618437188811549 Functional Loss - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89469003 chr10:89469006 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53273 0 0 1 0 2 PAPSS2 chr10:89469070 5'GT 89469070 Upstream 65bp
chr9 35733119 35733119 1 + G T UCEC 35733116 + 35733096 35733136 41 ACCACACCTACTCCCTCCCACGGGAAACTGTCTCTATGGAT ACCACACCTACTCCCTCCCACGGTAAACTGTCTCTATGGAT < 41bp 0.809197511065649 0.430984358498588 0.3165849 0.02597341 prediction 0.618395022131298 Functional Loss - CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733116 chr9:35733119 stopgain 0.017 0 24 hm5C_associated_SNPs_53274 0 0 1 0 1 CREB3 chr9:35733140 5'GT 35733140 Upstream 22bp
chr14 31142521 31142521 1 + G T COAD 31142518 + 31142498 31142538 41 AACTAGAATCTTACAGAGCACAGGAAGATGAGGTCAAACGA AACTAGAATCTTACAGAGCACAGTAAGATGAGGTCAAACGA < 41bp 0.809192246319491 0.462933311485392 0.4834195 0.20441088 prediction 0.618384492638981 Functional Loss - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31142518 chr14:31142521 stopgain 0.997 1 24 hm5C_associated_SNPs_53275 0 0 1 0 2 SCFD1 chr14:31142463 3'AG 31142463 Downstream 59bp
chr14 31142521 31142521 1 + G T COAD 31142518 + 31142498 31142538 41 AACTAGAATCTTACAGAGCACAGGAAGATGAGGTCAAACGA AACTAGAATCTTACAGAGCACAGTAAGATGAGGTCAAACGA < 41bp 0.809192246319491 0.462933311485392 0.4834195 0.20441088 prediction 0.618384492638981 Functional Loss - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31142518 chr14:31142521 stopgain 0.997 1 24 hm5C_associated_SNPs_53275 0 0 1 0 2 SCFD1 chr14:31142553 5'GT 31142553 Upstream 33bp
chr19 41597732 41597732 1 + G T UCEC 41597729 + 41597709 41597749 41 GGGCTGGAGGACTTCATCGCCAAGAAGGTGGAGCACAACCA GGGCTGGAGGACTTCATCGCCAATAAGGTGGAGCACAACCA < 41bp 0.809188336819506 0.435877887655729 0.4674236 0.20248374 prediction 0.618376673639011 Functional Loss - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41597729 chr19:41597732 nonsynonymous SNV 0.670 1 24 hm5C_associated_SNPs_53276 0 0 0 0 2 CYP2A13 chr19:41597637 3'AG 41597637 Downstream 96bp
chr19 41597732 41597732 1 + G T UCEC 41597729 + 41597709 41597749 41 GGGCTGGAGGACTTCATCGCCAAGAAGGTGGAGCACAACCA GGGCTGGAGGACTTCATCGCCAATAAGGTGGAGCACAACCA < 41bp 0.809188336819506 0.435877887655729 0.4674236 0.20248374 prediction 0.618376673639011 Functional Loss - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41597729 chr19:41597732 nonsynonymous SNV 0.670 1 24 hm5C_associated_SNPs_53276 0 0 0 0 2 CYP2A13 chr19:41597813 5'GT 41597813 Upstream 82bp
chr11 25004797 25004797 1 + G T LUAD 25004794 + 25004774 25004814 41 ACTCGGATGTTACTCCCACCCAGGAATATTGCCTCTAAGCT ACTCGGATGTTACTCCCACCCAGTAATATTGCCTCTAAGCT < 41bp 0.809171933795983 0.494046185886567 0.8452246 0.38853794 prediction 0.618343867591966 Functional Loss - LUZP2 ENSG00000187398 CDS Human protein_coding chr11:25004794 chr11:25004797 nonsynonymous SNV 0.484 0 24 hm5C_associated_SNPs_53278 0 0 0 0 1 LUZP2 chr11:25004839 5'GT 25004839 Upstream 43bp
chr17 7155834 7155834 1 + G T CESC 7155832 + 7155812 7155852 41 ACACTGGGTCATGACGCCATCAGAGGGCGCCAGAGCAGGGA ACACTGGGTCATGACGCCATCATAGGGCGCCAGAGCAGGGA < 41bp 0.831777103082624 0.522637579412663 0.9051442 0.4977892 prediction 0.618279047339922 Functional Loss - ELP5 ENSG00000170291 CDS Human protein_coding chr17:7155832 chr17:7155834 stopgain 0.024 0 23 hm5C_associated_SNPs_53280 0 0 1 0 1 ELP5 chr17:7155915 5'GT 7155915 Upstream 82bp
chr5 10461347 10461347 1 + G T LUAD 10461344 + 10461324 10461364 41 GCGAGATCCTCACGGACGATCCGGAGGGCGGGCCCGCTCGC GCGAGATCCTCACGGACGATCCGTAGGGCGGGCCCGCTCGC < 41bp 0.891520181993906 0.582384717344706 0.8435466 0.10438007 prediction 0.6182709292984 Functional Loss - ROPN1L ENSG00000145491 CDS Human protein_coding chr5:10461344 chr5:10461347 stopgain 0.296 1 24 hm5C_associated_SNPs_53281 0 0 0 0 1 ROPN1L chr5:10461296 3'AG 10461296 Downstream 52bp
chrX 123480562 123480562 1 + G T LUSC 123480560 + 123480540 123480580 41 CGAGAAGCTCCTGCTTGCCACTGGGCTGGATGGCAGCTATT CGAGAAGCTCCTGCTTGCCACTTGGCTGGATGGCAGCTATT < 41bp 0.818300498145931 0.509173241727249 0.5283144 0.14713085 prediction 0.618254512837363 Functional Loss - SH2D1A ENSG00000183918 CDS Human protein_coding chrX:123480560 chrX:123480562 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_53282 0 0 0 2 1 SH2D1A chrX:123480629 5'GT 123480629 Upstream 68bp
chr12 68043620 68043620 1 + G T LUAD 68043617 + 68043597 68043637 41 GTTCGTCAGCTTCAGGCTTCCCCGGGGCTCGGTGCAGGGGC GTTCGTCAGCTTCAGGCTTCCCCTGGGCTCGGTGCAGGGGC < 41bp 0.866215909666166 0.557098642540195 0.42825067 0.07199991 prediction 0.618234534251941 Functional Loss - DYRK2 ENSG00000127334 CDS Human protein_coding chr12:68043617 chr12:68043620 synonymous SNV . 0 24 hm5C_associated_SNPs_53284 0 0 1 0 1 DYRK2 chr12:68043577 3'AG 68043577 Downstream 44bp
chr18 2909794 2909794 1 + G T LIHC 2909792 + 2909772 2909812 41 AACAAAGTGCTGGTGAACGACGGGGATGTTTACAACCCCAG AACAAAGTGCTGGTGAACGACGTGGATGTTTACAACCCCAG < 41bp 0.836810551861844 0.527699255692493 0.7528955 0.2573315 prediction 0.618222592338702 Functional Loss - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2909792 chr18:2909794 nonsynonymous SNV 0.509 4 23 hm5C_associated_SNPs_53286 0 0 1 0 1 EMILIN2 chr18:2909817 5'GT 2909817 Upstream 24bp
chr14 77572118 77572118 1 + G T UCEC 77572116 + 77572096 77572136 41 TGCCAAAGTAGGCAAAGGCACAGAGATGAAGAAAGTGGCTC TGCCAAAGTAGGCAAAGGCACATAGATGAAGAAAGTGGCTC < 41bp 0.809087556470855 0.479848121934094 0.6660027 0.20444393 prediction 0.618175112941709 Functional Loss - CIPC ENSG00000198894;ENSG00000259164 CDS Human other chr14:77572116 chr14:77572118 stopgain 0.996 0 23 hm5C_associated_SNPs_53287 0 0 1 0 1 CIPC chr14:77572187 5'GT 77572187 Upstream 70bp
chr12 2929369 2929369 1 + A C STAD 2929365 + 2929345 2929385 41 TGACAGGGCAGCTGGTGTCCCTCAAGAAATGGATGCTGGAG TGACAGGGCAGCTGGTGTCCCTCACGAAATGGATGCTGGAG < 41bp 0.809076547254315 0.389245987256744 0.2023746 0.043607533 prediction 0.618153094508629 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2929365 chr12:2929369 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_53290 0 0 1 1 1 ITFG2 chr12:2929391 5'GT 2929391 Upstream 23bp
chr19 49447646 49447646 1 + G T STAD 49447644 + 49447624 49447664 41 CCTGCTGGTGCCCGACCGAGCTGGTGGTGAAGGGGGAGCAT CCTGCTGGTGCCCGACCGAGCTTGTGGTGAAGGGGGAGCAT < 41bp 0.836584369770612 0.527516495443641 0.76982194 0.38596 prediction 0.618135748653942 Functional Loss - DHDH ENSG00000104808 CDS Human protein_coding chr19:49447644 chr19:49447646 synonymous SNV . 0 23 hm5C_associated_SNPs_53291 0 0 0 0 1 DHDH chr19:49447614 3'AG 49447614 Downstream 33bp
chr10 99504558 99504558 1 + G T LUAD 99504556 + 99504536 99504576 41 GGCTACCTTCAGGAGGTTTGCCGGGCACGGCTGCCTGATTC GGCTACCTTCAGGAGGTTTGCCTGGCACGGCTGCCTGATTC < 41bp 0.809061969185483 0.491708968787951 0.91836596 0.7417645 prediction 0.618123938370966 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99504556 chr10:99504558 nonsynonymous SNV 0.949 1 23 hm5C_associated_SNPs_53292 0 0 1 0 1 ZFYVE27 chr10:99504486 3'AG 99504486 Downstream 73bp
chr17 8159678 8159678 1 + G T UCEC 8159676 + 8159656 8159696 41 TTGAGTCCATCATGAGCACCCAGGAATCCTCGAACCCCAAC TTGAGTCCATCATGAGCACCCATGAATCCTCGAACCCCAAC < 41bp 0.809055063420982 0.484161339180724 0.35611832 0.045232207 prediction 0.618110126841964 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8159676 chr17:8159678 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_53293 0 0 1 0 2 PFAS chr17:8159585 3'AG 8159585 Downstream 94bp
chr17 8159678 8159678 1 + G T UCEC 8159676 + 8159656 8159696 41 TTGAGTCCATCATGAGCACCCAGGAATCCTCGAACCCCAAC TTGAGTCCATCATGAGCACCCATGAATCCTCGAACCCCAAC < 41bp 0.809055063420982 0.484161339180724 0.35611832 0.045232207 prediction 0.618110126841964 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8159676 chr17:8159678 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_53293 0 0 1 0 2 PFAS chr17:8159725 5'GT 8159725 Upstream 48bp
chr2 79253870 79253870 1 + A T BLCA 79253866 + 79253846 79253886 41 AACCCAGAAGGAACTGCCCTCTCCACGGATCAGCTGTCCCA AACCCAGAAGGAACTGCCCTCTCCTCGGATCAGCTGTCCCA < 41bp 0.809050343580361 0.498023319273348 0.9432999 0.24066412 prediction 0.618100687160722 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79253866 chr2:79253870 synonymous SNV . 0 25 hm5C_associated_SNPs_53294 0 0 0 0 2 REG3G chr2:79253839 3'AG 79253839 Downstream 32bp
chr2 79253870 79253870 1 + A T BLCA 79253866 + 79253846 79253886 41 AACCCAGAAGGAACTGCCCTCTCCACGGATCAGCTGTCCCA AACCCAGAAGGAACTGCCCTCTCCTCGGATCAGCTGTCCCA < 41bp 0.809050343580361 0.498023319273348 0.9432999 0.24066412 prediction 0.618100687160722 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79253866 chr2:79253870 synonymous SNV . 0 25 hm5C_associated_SNPs_53294 0 0 0 0 2 REG3G chr2:79253957 5'GT 79253957 Upstream 88bp
chr12 31135592 31135592 1 + G T SARC 31135590 + 31135570 31135610 41 CAGTGGTGGTGCGCTGCGGCCAGCGGGCCCACCCCTCCAAC CAGTGGTGGTGCGCTGCGGCCATCGGGCCCACCCCTCCAAC < 41bp 0.808984464905902 0.468917329467552 0.50841504 0.26602012 prediction 0.617968929811804 Functional Loss - TSPAN11 ENSG00000110900 CDS Human protein_coding chr12:31135590 chr12:31135592 nonsynonymous SNV 0.781 0 23 hm5C_associated_SNPs_53301 0 0 0 0 1 TSPAN11 chr12:31135625 5'GT 31135625 Upstream 34bp
chr2 1459997 1459997 1 + G T LUAD 1459994 + 1459974 1460014 41 AGCACCAGCAAAGCTGCCTTCGGGGGAGGGGCTGACTGCCA AGCACCAGCAAAGCTGCCTTCGGTGGAGGGGCTGACTGCCA < 41bp 0.869892696778998 0.560949344470523 0.9268029 0.4169091 prediction 0.61788670461695 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1459994 chr2:1459997 synonymous SNV . 0 24 hm5C_associated_SNPs_53304 0 0 0 0 1 TPO chr2:1460054 5'GT 1460054 Upstream 58bp
chr5 1214107 1214107 1 + G T UCEC 1214105 + 1214085 1214125 41 GCCGGACACCTGGCTGGACGCGGGCGCACAGGTCTTCTTCT GCCGGACACCTGGCTGGACGCGTGCGCACAGGTCTTCTTCT < 41bp 0.855067204629564 0.546162140116443 0.93072724 0.30654502 prediction 0.617810129026242 Functional Loss - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1214105 chr5:1214107 nonsynonymous SNV 0.262 4 23 hm5C_associated_SNPs_53307 0 0 0 0 2 SLC6A19 chr5:1214068 3'AG 1214068 Downstream 40bp
chr5 1214107 1214107 1 + G T UCEC 1214105 + 1214085 1214125 41 GCCGGACACCTGGCTGGACGCGGGCGCACAGGTCTTCTTCT GCCGGACACCTGGCTGGACGCGTGCGCACAGGTCTTCTTCT < 41bp 0.855067204629564 0.546162140116443 0.93072724 0.30654502 prediction 0.617810129026242 Functional Loss - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1214105 chr5:1214107 nonsynonymous SNV 0.262 4 23 hm5C_associated_SNPs_53307 0 0 0 0 2 SLC6A19 chr5:1214180 5'GT 1214180 Upstream 74bp
chr3 186571004 186571004 1 - C A STAD 186571007 - 186570987 186571027 41 GCCATCTCTGCCATCACGGCCTGGGGCCCCATTATGGCCCG GCCATCTCTGCCATCACGGCCTGTGGCCCCATTATGGCCCG < 41bp 0.875131131772208 0.566226238424963 0.30466846 0.062194765 prediction 0.617809786694491 Functional Loss - ADIPOQ ENSG00000181092 CDS Human protein_coding chr3:186571007 chr3:186571004 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_53308 0 0 0 0 1 ADIPOQ chr3:186571031 3'AG 186571031 Downstream 28bp
chr10 6262674 6262674 1 + G T LUAD 6262672 + 6262652 6262692 41 GGCCGGAGGTTCCTGGTGAACCGGGTGCAGGACCACATCCA GGCCGGAGGTTCCTGGTGAACCTGGTGCAGGACCACATCCA < 41bp 0.808898992937103 0.480027350304979 0.8759029 0.21386194 prediction 0.617797985874206 Functional Loss - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6262672 chr10:6262674 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_53309 0 0 1 0 1 PFKFB3 chr10:6262621 3'AG 6262621 Downstream 54bp
chr9 93629441 93629441 1 + G T UCEC 93629438 + 93629418 93629458 41 GTCAGCGGGTGGAATAATCTCAAGAATCAAATCATACTCCT GTCAGCGGGTGGAATAATCTCAATAATCAAATCATACTCCT < 41bp 0.869677137980707 0.560796045364369 0.19075462 0.07574463 prediction 0.617762185232676 Functional Loss - SYK ENSG00000165025 CDS Human protein_coding chr9:93629438 chr9:93629441 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_53312 0 0 0 0 3 SYK chr9:93629413 3'AG 93629413 Downstream 29bp
chr9 93629441 93629441 1 + G T UCEC 93629438 + 93629418 93629458 41 GTCAGCGGGTGGAATAATCTCAAGAATCAAATCATACTCCT GTCAGCGGGTGGAATAATCTCAATAATCAAATCATACTCCT < 41bp 0.869677137980707 0.560796045364369 0.19075462 0.07574463 prediction 0.617762185232676 Functional Loss - SYK ENSG00000165025 CDS Human protein_coding chr9:93629438 chr9:93629441 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_53312 0 0 0 0 3 SYK chr9:93629481 5'GT 93629481 Upstream 41bp
chr9 93629441 93629441 1 + G T UCEC 93629438 + 93629418 93629458 41 GTCAGCGGGTGGAATAATCTCAAGAATCAAATCATACTCCT GTCAGCGGGTGGAATAATCTCAATAATCAAATCATACTCCT < 41bp 0.869677137980707 0.560796045364369 0.19075462 0.07574463 prediction 0.617762185232676 Functional Loss - SYK ENSG00000165025 CDS Human protein_coding chr9:93629438 chr9:93629441 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_53312 0 0 0 0 3 SYK chr9:93629518 5'GT 93629518 Upstream 78bp
chr12 2930940 2930940 1 + G T UCEC 2930938 + 2930918 2930958 41 TGGATCACCAGCTCTTTGCCCTGGAGAAACTGGATGTCACC TGGATCACCAGCTCTTTGCCCTTGAGAAACTGGATGTCACC < 41bp 0.829553484024149 0.520731343670003 0.25903648 0.055042446 prediction 0.617644280708293 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2930938 chr12:2930940 synonymous SNV . 0 23 hm5C_associated_SNPs_53318 0 0 1 1 2 ITFG2 chr12:2930858 3'AG 2930858 Downstream 83bp
chr12 2930940 2930940 1 + G T UCEC 2930938 + 2930918 2930958 41 TGGATCACCAGCTCTTTGCCCTGGAGAAACTGGATGTCACC TGGATCACCAGCTCTTTGCCCTTGAGAAACTGGATGTCACC < 41bp 0.829553484024149 0.520731343670003 0.25903648 0.055042446 prediction 0.617644280708293 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2930938 chr12:2930940 synonymous SNV . 0 23 hm5C_associated_SNPs_53318 0 0 1 1 2 ITFG2 chr12:2930958 5'GT 2930958 Upstream 19bp
chr2 85823723 85823723 1 + G T BLCA 85823720 + 85823700 85823740 41 CACCTGCCTCCACCAGCTGCCAAGACTGTGGTTGAGAACCT CACCTGCCTCCACCAGCTGCCAATACTGTGGTTGAGAACCT < 41bp 0.808814702802538 0.455482625463453 0.25018936 0.17464206 prediction 0.617629405605077 Functional Loss - RNF181 ENSG00000168894 CDS Human protein_coding chr2:85823720 chr2:85823723 nonsynonymous SNV 0.885 4 24 hm5C_associated_SNPs_53321 0 0 1 0 2 RNF181 chr2:85823642 3'AG 85823642 Downstream 82bp
chr2 85823723 85823723 1 + G T BLCA 85823720 + 85823700 85823740 41 CACCTGCCTCCACCAGCTGCCAAGACTGTGGTTGAGAACCT CACCTGCCTCCACCAGCTGCCAATACTGTGGTTGAGAACCT < 41bp 0.808814702802538 0.455482625463453 0.25018936 0.17464206 prediction 0.617629405605077 Functional Loss - RNF181 ENSG00000168894 CDS Human protein_coding chr2:85823720 chr2:85823723 nonsynonymous SNV 0.885 4 24 hm5C_associated_SNPs_53321 0 0 1 0 2 RNF181 chr2:85823772 5'GT 85823772 Upstream 50bp
chr4 1316262 1316262 1 + G T UCEC 1316259 + 1316239 1316279 41 CCACCTGCCTGGCCTGGTGCCATGACAACAAGTCCCGGCTC CCACCTGCCTGGCCTGGTGCCATTACAACAAGTCCCGGCTC < 41bp 0.808810514703233 0.441926734247798 0.3914647 0.38337165 prediction 0.617621029406465 Functional Loss - MAEA ENSG00000090316 CDS Human protein_coding chr4:1316259 chr4:1316262 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_53322 0 0 1 0 2 MAEA chr4:1316169 3'AG 1316169 Downstream 94bp
chr4 1316262 1316262 1 + G T UCEC 1316259 + 1316239 1316279 41 CCACCTGCCTGGCCTGGTGCCATGACAACAAGTCCCGGCTC CCACCTGCCTGGCCTGGTGCCATTACAACAAGTCCCGGCTC < 41bp 0.808810514703233 0.441926734247798 0.3914647 0.38337165 prediction 0.617621029406465 Functional Loss - MAEA ENSG00000090316 CDS Human protein_coding chr4:1316259 chr4:1316262 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_53322 0 0 1 0 2 MAEA chr4:1316291 5'GT 1316291 Upstream 30bp
chr10 127408457 127408457 1 + G T LUAD 127408455 + 127408435 127408475 41 GAGGGCTCAGCCTCCTGTCCCAGGGAGAATCCGAGGAATCT GAGGGCTCAGCCTCCTGTCCCATGGAGAATCCGAGGAATCT < 41bp 0.831001645340937 0.522197701054312 0.89656496 0.10992536 prediction 0.61760788857325 Functional Loss - EDRF1 ENSG00000107938 CDS Human protein_coding chr10:127408455 chr10:127408457 nonsynonymous SNV 0.994 1 23 hm5C_associated_SNPs_53324 0 0 0 0 1 EDRF1 chr10:127408484 5'GT 127408484 Upstream 28bp
chr6 7862714 7862714 1 + G T LUAD 7862711 + 7862691 7862731 41 TACCCAGTCCCAGGACGTGGCGCGGGTCTCCAGTGCTTCAG TACCCAGTCCCAGGACGTGGCGCTGGTCTCCAGTGCTTCAG < 41bp 0.879632275951666 0.570836681958222 0.8349453 0.38599434 prediction 0.617591187986889 Functional Loss - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7862711 chr6:7862714 nonsynonymous SNV 0.549 2 24 hm5C_associated_SNPs_53325 0 0 0 0 1 BMP6 chr6:7862731 5'GT 7862731 Upstream 18bp
chr19 14040966 14040966 1 + G T STAD 14040964 + 14040944 14040984 41 CGCCTGGGCAACGATGGCAGCAGGGTGAGCTGGTCGCGGGC CGCCTGGGCAACGATGGCAGCATGGTGAGCTGGTCGCGGGC < 41bp 0.824850700036932 0.516057977575708 0.90903866 0.7865709 prediction 0.617585444922447 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14040964 chr19:14040966 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_53326 0 0 0 0 1 CC2D1A chr19:14040891 3'AG 14040891 Downstream 76bp
chr14 24528928 24528928 1 + A C LUAD 24528924 + 24528904 24528944 41 GCCCTGGGCTTCCTGGACATCGCAAGGGCCCTGGAGAGGTG GCCCTGGGCTTCCTGGACATCGCACGGGCCCTGGAGAGGTG < 41bp 0.808763820570359 0.406383267075161 0.39783534 0.21435323 prediction 0.617527641140718 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24528924 chr14:24528928 synonymous SNV . 0 25 hm5C_associated_SNPs_53330 0 0 0 0 2 CARMIL3 chr14:24528873 3'AG 24528873 Downstream 56bp
chr14 24528928 24528928 1 + A C LUAD 24528924 + 24528904 24528944 41 GCCCTGGGCTTCCTGGACATCGCAAGGGCCCTGGAGAGGTG GCCCTGGGCTTCCTGGACATCGCACGGGCCCTGGAGAGGTG < 41bp 0.808763820570359 0.406383267075161 0.39783534 0.21435323 prediction 0.617527641140718 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24528924 chr14:24528928 synonymous SNV . 0 25 hm5C_associated_SNPs_53330 0 0 0 0 2 CARMIL3 chr14:24528941 5'GT 24528941 Upstream 14bp
chrX 30236765 30236765 1 + G T COAD 30236762 + 30236742 30236782 41 CCGCAAGGCCCGAGATGAGACCCGGGGTCTCAATGTTCCTC CCGCAAGGCCCGAGATGAGACCCTGGGTCTCAATGTTCCTC < 41bp 0.80871042704318 0.444955221087089 0.43374804 0.05910471 prediction 0.617420854086359 Functional Loss - MAGEB2 ENSG00000099399 CDS Human protein_coding chrX:30236762 chrX:30236765 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_53337 0 0 0 0 1 MAGEB2 chrX:30236693 3'AG 30236693 Downstream 73bp
chr15 41104925 41104925 1 + G T UCEC 41104923 + 41104903 41104943 41 CTCTCCAGAATGATCTCAACCAGGGTGGCCCAGGGAGCACT CTCTCCAGAATGATCTCAACCATGGTGGCCCAGGGAGCACT < 41bp 0.83839606252296 0.529688127775265 0.93438554 0.8639619 prediction 0.61741586949539 Functional Loss - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41104923 chr15:41104925 nonsynonymous SNV 0.391 1 23 hm5C_associated_SNPs_53338 0 0 1 0 1 ZFYVE19 chr15:41104897 3'AG 41104897 Downstream 29bp
chr2 160585652 160585652 1 + G T SARC 160585649 + 160585629 160585669 41 TTTAAATGATACCTATCACTCAAGAGACTCTTCATTTAGAT TTTAAATGATACCTATCACTCAATAGACTCTTCATTTAGAT < 41bp 0.808695828988364 0.480235901674563 0.24100208 0.095047235 prediction 0.617391657976728 Functional Loss - MARCH7 ENSG00000136536 CDS Human protein_coding chr2:160585649 chr2:160585652 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_53339 0 0 1 0 1 MARCH7 chr2:160585686 5'GT 160585686 Upstream 35bp
chr1 193218898 193218898 1 + G T LUSC 193218895 + 193218875 193218915 41 TGAAGTATGATGAAGTTCGTCTGGATCCAAATGTTCAGAAA TGAAGTATGATGAAGTTCGTCTGTATCCAAATGTTCAGAAA < 41bp 0.845966142346104 0.537279595916923 0.2590088 0.08114523 prediction 0.617373092858362 Functional Loss - CDC73 ENSG00000134371 CDS Human protein_coding chr1:193218895 chr1:193218898 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_53341 0 0 1 0 1 CDC73 chr1:193218860 3'AG 193218860 Downstream 39bp
chr17 7948663 7948663 1 + G T SARC 7948661 + 7948641 7948681 41 CCCCAATGACCCTGCTATACCAGAGCCCAGGCTGCGGGCCG CCCCAATGACCCTGCTATACCATAGCCCAGGCTGCGGGCCG < 41bp 0.808671593395229 0.460816828743817 0.9212539 0.36951694 prediction 0.617343186790458 Functional Loss - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7948661 chr17:7948663 nonsynonymous SNV 0.014 2 23 hm5C_associated_SNPs_53345 0 0 0 0 1 ALOX15B chr17:7948702 5'GT 7948702 Upstream 40bp
chr4 75482021 75482021 1 + G T LUSC 75482018 + 75481998 75482038 41 CCCTGCAGGCCATTATGCTGCTGGATTGGACCTCAATGACA CCCTGCAGGCCATTATGCTGCTGTATTGGACCTCAATGACA < 41bp 0.808655301638166 0.476125565401057 0.3987699 0.10997254 prediction 0.617310603276333 Functional Loss - AREG ENSG00000205595 CDS Human other chr4:75482018 chr4:75482021 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_53346 0 0 0 0 1 AREG chr4:75482006 3'AG 75482006 Downstream 16bp
chr2 88484990 88484990 1 + G T UCEC 88484988 + 88484968 88485008 41 ATTACCAGCAGATAGACAGGCAGCAGCCCAGGTACAGGCAA ATTACCAGCAGATAGACAGGCATCAGCCCAGGTACAGGCAA < 41bp 0.820938573087914 0.512304348747812 0.3970574 0.33025706 prediction 0.617268448680205 Functional Loss - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88484988 chr2:88484990 nonsynonymous SNV 0.887 0 23 hm5C_associated_SNPs_53348 0 0 0 0 1 THNSL2 chr2:88484998 5'GT 88484998 Upstream 9bp
chr1 24078495 24078495 1 + G T UCEC 24078492 + 24078472 24078512 41 AACCAAGTCAGAGAAGCCGGCTGGAGCTGATTTAGCCAAGC AACCAAGTCAGAGAAGCCGGCTGTAGCTGATTTAGCCAAGC < 41bp 0.808625158971548 0.451687988564967 0.5721414 0.2990694 prediction 0.617250317943096 Functional Loss - ELOA ENSG00000011007 CDS Human protein_coding chr1:24078492 chr1:24078495 nonsynonymous SNV 0.790 0 24 hm5C_associated_SNPs_53351 0 0 1 0 1 ELOA chr1:24078520 5'GT 24078520 Upstream 26bp
chr22 45929773 45929773 1 + G T OV 45929771 + 45929751 45929791 41 GAGCTCACAGAGGACAATAGCTGCAAAGGTACAGCATGCGC GAGCTCACAGAGGACAATAGCTTCAAAGGTACAGCATGCGC < 41bp 0.816360394350026 0.507743376060814 0.18205285 0.06842634 prediction 0.617234036578425 Functional Loss - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45929771 chr22:45929773 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_53352 0 0 1 0 1 FBLN1 chr22:45929778 5'GT 45929778 Upstream 6bp
chr12 72091298 72091298 1 + G T COAD 72091295 + 72091275 72091315 41 TCTCCAAGACTGATAACAACCTGGGAGAAAGTTCCAGTTGG TCTCCAAGACTGATAACAACCTGTGAGAAAGTTCCAGTTGG < 41bp 0.863933580251301 0.555332360750293 0.7878636 0.1170381 prediction 0.617202439002016 Functional Loss - TMEM19 ENSG00000139291 CDS Human protein_coding chr12:72091295 chr12:72091298 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53355 0 0 0 0 1 TMEM19 chr12:72091314 5'GT 72091314 Upstream 17bp
chr4 154523830 154523830 1 + G T UCEC 154523828 + 154523808 154523848 41 CTTGTGTGCAGACGTGGTTCCAGGACCCAGCTGGGAGGAGT CTTGTGTGCAGACGTGGTTCCATGACCCAGCTGGGAGGAGT < 41bp 0.808600851412296 0.4974961180209 0.46091887 0.2717492 prediction 0.617201702824593 Functional Loss - TMEM131L ENSG00000121210 CDS Human protein_coding chr4:154523828 chr4:154523830 stopgain 0.995 1 23 hm5C_associated_SNPs_53356 0 0 0 0 1 TMEM131L chr4:154523879 5'GT 154523879 Upstream 50bp
chr16 50741838 50741838 1 + G T STAD 50741835 + 50741815 50741855 41 CCTTCCTTCTACAACATGTTCAGGAATTACCAGTCCCATTG CCTTCCTTCTACAACATGTTCAGTAATTACCAGTCCCATTG < 41bp 0.865526150701331 0.556943046645126 0.89914864 0.2574287 prediction 0.617166208112411 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50741835 chr16:50741838 stopgain 0.007 0 24 hm5C_associated_SNPs_53358 0 0 0 0 2 NOD2 chr16:50741766 3'AG 50741766 Downstream 73bp
chr16 50741838 50741838 1 + G T STAD 50741835 + 50741815 50741855 41 CCTTCCTTCTACAACATGTTCAGGAATTACCAGTCCCATTG CCTTCCTTCTACAACATGTTCAGTAATTACCAGTCCCATTG < 41bp 0.865526150701331 0.556943046645126 0.89914864 0.2574287 prediction 0.617166208112411 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50741835 chr16:50741838 stopgain 0.007 0 24 hm5C_associated_SNPs_53358 0 0 0 0 2 NOD2 chr16:50741871 5'GT 50741871 Upstream 34bp
chr2 231090572 231090572 1 + G T LUAD 231090569 + 231090549 231090589 41 AGGCCAAGCTCATGGCCCAGCAGGGCCAGCAGGGGCAGATG AGGCCAAGCTCATGGCCCAGCAGTGCCAGCAGGGGCAGATG < 41bp 0.871129390634963 0.562547256136717 0.60048383 0.17498532 prediction 0.617164268996492 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231090569 chr2:231090572 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_53359 0 0 0 0 1 SP140 chr2:231090618 5'GT 231090618 Upstream 47bp
chr16 77850906 77850906 1 + G T LAML 77850904 + 77850884 77850924 41 GGTGCCAGGATTTGAGTGTTCTGGGATTGTTGAAGCTCTGG GGTGCCAGGATTTGAGTGTTCTTGGATTGTTGAAGCTCTGG < 41bp 0.808578790898042 0.49374493587533 0.37242937 0.13396344 prediction 0.617157581796083 Functional Loss - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77850904 chr16:77850906 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_53360 0 0 0 0 2 VAT1L chr16:77850818 3'AG 77850818 Downstream 89bp
chr16 77850906 77850906 1 + G T LAML 77850904 + 77850884 77850924 41 GGTGCCAGGATTTGAGTGTTCTGGGATTGTTGAAGCTCTGG GGTGCCAGGATTTGAGTGTTCTTGGATTGTTGAAGCTCTGG < 41bp 0.808578790898042 0.49374493587533 0.37242937 0.13396344 prediction 0.617157581796083 Functional Loss - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77850904 chr16:77850906 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_53360 0 0 0 0 2 VAT1L chr16:77850947 5'GT 77850947 Upstream 42bp
chr2 113674783 113674783 1 + G T SARC 113674781 + 113674761 113674801 41 CAAAGTACTGGTCCTGGACTCTGGGAATCTCATAGCAGTTC CAAAGTACTGGTCCTGGACTCTTGGAATCTCATAGCAGTTC < 41bp 0.808577876961413 0.498479406785803 0.3469732 0.18205065 prediction 0.617155753922825 Functional Loss - IL37 ENSG00000125571 CDS Human protein_coding chr2:113674781 chr2:113674783 nonsynonymous SNV 0.000 3 23 hm5C_associated_SNPs_53361 0 0 1 0 2 IL37 chr2:113674706 3'AG 113674706 Downstream 78bp
chr2 113674783 113674783 1 + G T SARC 113674781 + 113674761 113674801 41 CAAAGTACTGGTCCTGGACTCTGGGAATCTCATAGCAGTTC CAAAGTACTGGTCCTGGACTCTTGGAATCTCATAGCAGTTC < 41bp 0.808577876961413 0.498479406785803 0.3469732 0.18205065 prediction 0.617155753922825 Functional Loss - IL37 ENSG00000125571 CDS Human protein_coding chr2:113674781 chr2:113674783 nonsynonymous SNV 0.000 3 23 hm5C_associated_SNPs_53361 0 0 1 0 2 IL37 chr2:113674825 5'GT 113674825 Upstream 43bp
chr18 29099836 29099836 1 + G T LUAD 29099834 + 29099814 29099854 41 TTAGTGCGGCAAAAGCGCGCCTGGATCACCGCCCCCGTGGC TTAGTGCGGCAAAAGCGCGCCTTGATCACCGCCCCCGTGGC < 41bp 0.830050644474015 0.521491404797331 0.3204605 0.020359606 prediction 0.617118479353369 Functional Loss - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29099834 chr18:29099836 nonsynonymous SNV 0.944 3 23 hm5C_associated_SNPs_53365 1 0 1 0 2 DSG2 chr18:29099766 3'AG 29099766 Downstream 71bp
chr18 29099836 29099836 1 + G T LUAD 29099834 + 29099814 29099854 41 TTAGTGCGGCAAAAGCGCGCCTGGATCACCGCCCCCGTGGC TTAGTGCGGCAAAAGCGCGCCTTGATCACCGCCCCCGTGGC < 41bp 0.830050644474015 0.521491404797331 0.3204605 0.020359606 prediction 0.617118479353369 Functional Loss - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29099834 chr18:29099836 nonsynonymous SNV 0.944 3 23 hm5C_associated_SNPs_53365 1 0 1 0 2 DSG2 chr18:29099900 5'GT 29099900 Upstream 65bp
chr10 70748989 70748989 1 + G T THYM 70748987 + 70748967 70749007 41 AGGTACCGGCTCTCGCACGACTGCATCTCTCTCTGCATCCA AGGTACCGGCTCTCGCACGACTTCATCTCTCTCTGCATCCA < 41bp 0.809608141551928 0.501051338049729 0.28037786 0.11985764 prediction 0.617113607004397 Functional Loss - KIF1BP ENSG00000198954 CDS Human protein_coding chr10:70748987 chr10:70748989 nonsynonymous SNV 0.956 1 23 hm5C_associated_SNPs_53366 0 0 1 0 1 KIF1BP chr10:70749014 5'GT 70749014 Upstream 26bp
chr17 40721269 40721269 1 + G T SARC 40721267 + 40721247 40721287 41 TCGTCCCCACTTGCCAGCAGCAGGACTTCTCCATTGGCTCC TCGTCCCCACTTGCCAGCAGCATGACTTCTCCATTGGCTCC < 41bp 0.842619026784218 0.534063475587735 0.33707836 0.035582393 prediction 0.617111102392964 Functional Loss - MLX ENSG00000108788 CDS Human protein_coding chr17:40721267 chr17:40721269 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_53368 0 0 1 0 1 MLX chr17:40721222 3'AG 40721222 Downstream 48bp
chr11 10483264 10483264 1 + G T COAD 10483262 + 10483242 10483282 41 TGCAGAAGGAGCTGGCAGAGCAGAAGTCTGTGGAGACCGCA TGCAGAAGGAGCTGGCAGAGCATAAGTCTGTGGAGACCGCA < 41bp 0.827367150354716 0.518823664405298 0.39390305 0.2336238 prediction 0.617086971898835 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10483262 chr11:10483264 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_53369 0 0 1 0 1 AMPD3 chr11:10483287 5'GT 10483287 Upstream 24bp
chr11 124496861 124496861 1 + G T LUSC 124496859 + 124496839 124496879 41 ATCTACCCCGTGGGCTATTGCAGTACTCGAATATATGCCAG ATCTACCCCGTGGGCTATTGCATTACTCGAATATATGCCAG < 41bp 0.808539517226372 0.490691563977557 0.48083478 0.12730855 prediction 0.617079034452744 Functional Loss - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124496859 chr11:124496861 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_53371 0 0 1 0 2 TBRG1 chr11:124496800 3'AG 124496800 Downstream 62bp
chr11 124496861 124496861 1 + G T LUSC 124496859 + 124496839 124496879 41 ATCTACCCCGTGGGCTATTGCAGTACTCGAATATATGCCAG ATCTACCCCGTGGGCTATTGCATTACTCGAATATATGCCAG < 41bp 0.808539517226372 0.490691563977557 0.48083478 0.12730855 prediction 0.617079034452744 Functional Loss - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124496859 chr11:124496861 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_53371 0 0 1 0 2 TBRG1 chr11:124496946 5'GT 124496946 Upstream 86bp
chr19 50191469 50191469 1 + G T STAD 50191466 + 50191446 50191486 41 GACTTCAAGGGCCAGCTGTGCGAGCTGTCCTGCTCCACCGA GACTTCAAGGGCCAGCTGTGCGATCTGTCCTGCTCCACCGA < 41bp 0.808522381335441 0.429395781298694 0.5027338 0.17756546 prediction 0.617044762670881 Functional Loss - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50191466 chr19:50191469 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_53373 0 0 1 0 1 PRMT1 chr19:50191419 3'AG 50191419 Downstream 51bp
chr7 98991669 98991669 1 + G T SARC 98991667 + 98991647 98991687 41 TGCAGCCAGATCTCGGTGCTCAGCGGCGGCAAGGCCAAGTG TGCAGCCAGATCTCGGTGCTCATCGGCGGCAAGGCCAAGTG < 41bp 0.835807511432507 0.527289945174322 0.9197858 0.79479635 prediction 0.617035132516371 Functional Loss - ARPC1B ENSG00000130429 CDS Human protein_coding chr7:98991667 chr7:98991669 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_53374 0 0 0 0 2 ARPC1B chr7:98991652 3'AG 98991652 Downstream 18bp
chr7 98991669 98991669 1 + G T SARC 98991667 + 98991647 98991687 41 TGCAGCCAGATCTCGGTGCTCAGCGGCGGCAAGGCCAAGTG TGCAGCCAGATCTCGGTGCTCATCGGCGGCAAGGCCAAGTG < 41bp 0.835807511432507 0.527289945174322 0.9197858 0.79479635 prediction 0.617035132516371 Functional Loss - ARPC1B ENSG00000130429 CDS Human protein_coding chr7:98991667 chr7:98991669 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_53374 0 0 0 0 2 ARPC1B chr7:98991742 5'GT 98991742 Upstream 74bp
chr10 13151272 13151272 1 + G T BLCA 13151269 + 13151249 13151289 41 CAGATGAAAGAGCTCCTGACCGAGAACCACCAGCTGAAAGG CAGATGAAAGAGCTCCTGACCGATAACCACCAGCTGAAAGG < 41bp 0.875466225849043 0.566955118073031 0.8998939 0.40457648 prediction 0.617022215552024 Functional Loss - OPTN ENSG00000123240 CDS Human protein_coding chr10:13151269 chr10:13151272 nonsynonymous SNV 0.956 4 24 hm5C_associated_SNPs_53375 0 0 1 0 1 OPTN chr10:13151288 5'GT 13151288 Upstream 17bp
chr1 223949949 223949949 1 + G T LUAD 223949946 + 223949926 223949966 41 GAGACTGTTTGCCCAGTTGGCAGGAGAGGTAAATGTTCCCA GAGACTGTTTGCCCAGTTGGCAGTAGAGGTAAATGTTCCCA < 41bp 0.875206139549848 0.566697637983684 0.8895416 0.28319776 prediction 0.617017003132328 Functional Loss - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223949946 chr1:223949949 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_53376 0 0 1 0 2 CAPN2 chr1:223949888 3'AG 223949888 Downstream 62bp
chr1 223949949 223949949 1 + G T LUAD 223949946 + 223949926 223949966 41 GAGACTGTTTGCCCAGTTGGCAGGAGAGGTAAATGTTCCCA GAGACTGTTTGCCCAGTTGGCAGTAGAGGTAAATGTTCCCA < 41bp 0.875206139549848 0.566697637983684 0.8895416 0.28319776 prediction 0.617017003132328 Functional Loss - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223949946 chr1:223949949 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_53376 0 0 1 0 2 CAPN2 chr1:223949953 5'GT 223949953 Upstream 5bp
chr9 130430389 130430389 1 + G T LUSC 130430387 + 130430367 130430407 41 CCAGCGGCATCGGGGAGGCACGGGTGAAGGAGGTGCTCCTG CCAGCGGCATCGGGGAGGCACGTGTGAAGGAGGTGCTCCTG < 41bp 0.853468649622618 0.544970652640754 0.91949046 0.6789516 prediction 0.616995993963728 Functional Loss - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130430387 chr9:130430389 synonymous SNV . 0 23 hm5C_associated_SNPs_53378 0 0 0 0 2 STXBP1 chr9:130430359 3'AG 130430359 Downstream 31bp
chr9 130430389 130430389 1 + G T LUSC 130430387 + 130430367 130430407 41 CCAGCGGCATCGGGGAGGCACGGGTGAAGGAGGTGCTCCTG CCAGCGGCATCGGGGAGGCACGTGTGAAGGAGGTGCTCCTG < 41bp 0.853468649622618 0.544970652640754 0.91949046 0.6789516 prediction 0.616995993963728 Functional Loss - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130430387 chr9:130430389 synonymous SNV . 0 23 hm5C_associated_SNPs_53378 0 0 0 0 2 STXBP1 chr9:130430466 5'GT 130430466 Upstream 78bp
chr5 134002578 134002578 1 + G T STAD 134002575 + 134002555 134002595 41 CTTTTCAACCAGGAGCTCCTCATGGGCCCCCTCCAGCTGGA CTTTTCAACCAGGAGCTCCTCATTGGCCCCCTCCAGCTGGA < 41bp 0.808483842293602 0.432340355380428 0.2967729 0.049610138 prediction 0.616967684587204 Functional Loss - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134002575 chr5:134002578 nonsynonymous SNV 0.842 3 24 hm5C_associated_SNPs_53381 0 0 1 0 1 SEC24A chr5:134002513 3'AG 134002513 Downstream 66bp
chr1 213145986 213145986 1 + G T BRCA 213145984 + 213145964 213146004 41 CAGCTTTAAAACCTACTTCTCAGGAAACTACTTTCACCACG CAGCTTTAAAACCTACTTCTCATGAAACTACTTTCACCACG < 41bp 0.808436476892319 0.493094894392289 0.8582622 0.16350731 prediction 0.616872953784639 Functional Loss - VASH2 ENSG00000143494 CDS Human protein_coding chr1:213145984 chr1:213145986 stopgain 1.000 1 23 hm5C_associated_SNPs_53385 0 0 0 3 1 VASH2 chr1:213145922 3'AG 213145922 Downstream 65bp
chr22 37273682 37273682 1 + G T UCEC 37273680 + 37273660 37273700 41 TCCCATGCAGGCGGGAGTTCCAGAGAGAGGACATAGCTCTG TCCCATGCAGGCGGGAGTTCCATAGAGAGGACATAGCTCTG < 41bp 0.827456099337705 0.519030613281458 0.84208655 0.10464114 prediction 0.616850972112494 Functional Loss - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37273680 chr22:37273682 nonsynonymous SNV 0.980 0 23 hm5C_associated_SNPs_53386 0 0 0 0 1 NCF4 chr22:37273670 3'AG 37273670 Downstream 13bp
chr14 90485684 90485684 1 + G T UCEC 90485681 + 90485661 90485701 41 GCAAATCTGTCCAAGGCTGCCTGGGGAGCATTGGAGAAGAA GCAAATCTGTCCAAGGCTGCCTGTGGAGCATTGGAGAAGAA < 41bp 0.808421772915435 0.448796296330619 0.44315603 0.07173842 prediction 0.616843545830869 Functional Loss - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90485681 chr14:90485684 nonsynonymous SNV 0.908 5 24 hm5C_associated_SNPs_53387 0 0 0 0 2 TDP1 chr14:90485660 3'AG 90485660 Downstream 25bp
chr14 90485684 90485684 1 + G T UCEC 90485681 + 90485661 90485701 41 GCAAATCTGTCCAAGGCTGCCTGGGGAGCATTGGAGAAGAA GCAAATCTGTCCAAGGCTGCCTGTGGAGCATTGGAGAAGAA < 41bp 0.808421772915435 0.448796296330619 0.44315603 0.07173842 prediction 0.616843545830869 Functional Loss - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90485681 chr14:90485684 nonsynonymous SNV 0.908 5 24 hm5C_associated_SNPs_53387 0 0 0 0 2 TDP1 chr14:90485762 5'GT 90485762 Upstream 79bp
chr1 25667039 25667039 1 + A C UCEC 25667035 + 25667015 25667055 41 GCATTGACTGGGGGGAAAAGCGCAATACTATTGCTTCCATT GCATTGACTGGGGGGAAAAGCGCACTACTATTGCTTCCATT < 41bp 0.887283340598459 0.578888105493274 0.7738138 0.533071 prediction 0.616790470210371 Functional Loss - TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25667035 chr1:25667039 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_53388 0 0 1 0 2 TMEM50A chr1:25666965 3'AG 25666965 Downstream 75bp
chr1 25667039 25667039 1 + A C UCEC 25667035 + 25667015 25667055 41 GCATTGACTGGGGGGAAAAGCGCAATACTATTGCTTCCATT GCATTGACTGGGGGGAAAAGCGCACTACTATTGCTTCCATT < 41bp 0.887283340598459 0.578888105493274 0.7738138 0.533071 prediction 0.616790470210371 Functional Loss - TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25667035 chr1:25667039 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_53388 0 0 1 0 2 TMEM50A chr1:25667070 5'GT 25667070 Upstream 32bp
chr9 114688752 114688752 1 + G T LGG 114688750 + 114688730 114688770 41 TGCCTTACGTAGCAGACAGACAGGGCTTTGCTGCCACCTTA TGCCTTACGTAGCAGACAGACATGGCTTTGCTGCCACCTTA < 41bp 0.813965227866718 0.5056017455073 0.9085876 0.38604558 prediction 0.616726964718836 Functional Loss - UGCG ENSG00000148154 CDS Human protein_coding chr9:114688750 chr9:114688752 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_53390 0 0 1 0 2 UGCG chr9:114688664 3'AG 114688664 Downstream 89bp
chr9 114688752 114688752 1 + G T LGG 114688750 + 114688730 114688770 41 TGCCTTACGTAGCAGACAGACAGGGCTTTGCTGCCACCTTA TGCCTTACGTAGCAGACAGACATGGCTTTGCTGCCACCTTA < 41bp 0.813965227866718 0.5056017455073 0.9085876 0.38604558 prediction 0.616726964718836 Functional Loss - UGCG ENSG00000148154 CDS Human protein_coding chr9:114688750 chr9:114688752 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_53390 0 0 1 0 2 UGCG chr9:114688776 5'GT 114688776 Upstream 25bp
chr10 7839118 7839118 1 + G T SARC 7839115 + 7839095 7839135 41 TGAGAGAGAGCTGAAACCAGCTCGAATATATGGATTGGGAT TGAGAGAGAGCTGAAACCAGCTCTAATATATGGATTGGGAT < 41bp 0.858291363792631 0.549932458575131 0.20061848 0.62135947 prediction 0.616717810435 Functional Loss - ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7839115 chr10:7839118 nonsynonymous SNV 0.517 4 24 hm5C_associated_SNPs_53391 0 0 1 0 1 ATP5C1 chr10:7839141 5'GT 7839141 Upstream 24bp
chr9 82335188 82335188 1 + G T THYM 82335186 + 82335166 82335206 41 GCAACATCGCTGTGTGGGATCTGCACAACCAGACCTTGGTG GCAACATCGCTGTGTGGGATCTTCACAACCAGACCTTGGTG < 41bp 0.817327504137425 0.5089946878737 0.16632918 0.20878756 prediction 0.61666563252745 Functional Loss - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82335186 chr9:82335188 synonymous SNV . 0 23 hm5C_associated_SNPs_53393 0 0 0 0 1 TLE4 chr9:82335208 5'GT 82335208 Upstream 21bp
chr3 183777748 183777748 1 + A T THCA 183777744 + 183777724 183777764 41 GGTGGCTTCACTCCCTGCTGCTCCACTGCACCAGCCCAGGG GGTGGCTTCACTCCCTGCTGCTCCTCTGCACCAGCCCAGGG < 41bp 0.8083218793602 0.487536059540273 0.305467 0.08617073 prediction 0.6166437587204 Functional Loss - HTR3C ENSG00000178084 CDS Human protein_coding chr3:183777744 chr3:183777748 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_53394 0 0 0 0 1 HTR3C chr3:183777831 5'GT 183777831 Upstream 84bp
chr15 48056121 48056121 1 + G T COAD 48056118 + 48056098 48056138 41 CAGCGGGTCCTGGAGAAACACTGGACTTCATTTCTAAAGGC CAGCGGGTCCTGGAGAAACACTGTACTTCATTTCTAAAGGC < 41bp 0.847347049659896 0.539033604825545 0.8442203 0.2798374 prediction 0.616626889668701 Functional Loss - SEMA6D ENSG00000137872 CDS Human protein_coding chr15:48056118 chr15:48056121 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_53397 0 0 0 0 1 SEMA6D chr15:48056047 3'AG 48056047 Downstream 75bp
chr17 48247701 48247701 1 + G T SARC 48247699 + 48247679 48247719 41 TGGCCTATGTCATGTGCTGCCGGCGGGAGGGAAGGTGAATG TGGCCTATGTCATGTGCTGCCGTCGGGAGGGAAGGTGAATG < 41bp 0.808311802416522 0.493146166355009 0.4940098 0.20599273 prediction 0.616623604833044 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48247699 chr17:48247701 synonymous SNV . 0 23 hm5C_associated_SNPs_53398 0 0 0 0 1 SGCA chr17:48247712 5'GT 48247712 Upstream 12bp
chr12 9013767 9013767 1 + A C COAD 9013763 + 9013743 9013783 41 AGTCAGGGTCTACGGTGTCTCAAGAATTCGGCCACCTCCAC AGTCAGGGTCTACGGTGTCTCAAGCATTCGGCCACCTCCAC < 41bp 0.882642746168259 0.574357285565746 0.37853354 0.27267778 prediction 0.616570921205025 Functional Loss - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9013763 chr12:9013767 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_53400 0 0 0 0 1 A2ML1 chr12:9013731 3'AG 9013731 Downstream 37bp
chr17 21081599 21081599 1 + A C rs115536974 21081595 + 21081575 21081615 41 GCTAAACTGGTGCTCTGTGGCCGGAATGGTGGGGCCCTAGA GCTAAACTGGTGCTCTGTGGCCGGCATGGTGGGGCCCTAGA < 41bp 0.892605206639205 0.584334638095074 0.8165546 0.6784701 prediction 0.616541137088262 Functional Loss - DHRS7B ENSG00000109016 CDS Human protein_coding chr17:21081595 chr17:21081599 nonsynonymous SNV 0.716 2 25 hm5C_associated_SNPs_53401 0 0 1 0 2 DHRS7B chr17:21081546 3'AG 21081546 Downstream 54bp
chr17 21081599 21081599 1 + A C rs115536974 21081595 + 21081575 21081615 41 GCTAAACTGGTGCTCTGTGGCCGGAATGGTGGGGCCCTAGA GCTAAACTGGTGCTCTGTGGCCGGCATGGTGGGGCCCTAGA < 41bp 0.892605206639205 0.584334638095074 0.8165546 0.6784701 prediction 0.616541137088262 Functional Loss - DHRS7B ENSG00000109016 CDS Human protein_coding chr17:21081595 chr17:21081599 nonsynonymous SNV 0.716 2 25 hm5C_associated_SNPs_53401 0 0 1 0 2 DHRS7B chr17:21081655 5'GT 21081655 Upstream 57bp
chr12 104995745 104995745 1 + G T ESCA 104995743 + 104995723 104995763 41 GGAAGGGGTCCCGAAGCCCCCTGCAGGAACTCTACAACCCA GGAAGGGGTCCCGAAGCCCCCTTCAGGAACTCTACAACCCA < 41bp 0.808258203341044 0.499955990344924 0.06725481 0.015154272 prediction 0.616516406682087 Functional Loss - CHST11 ENSG00000171310 CDS Human protein_coding chr12:104995743 chr12:104995745 synonymous SNV . 0 23 hm5C_associated_SNPs_53403 0 0 0 0 2 CHST11 chr12:104995684 3'AG 104995684 Downstream 62bp
chr12 104995745 104995745 1 + G T ESCA 104995743 + 104995723 104995763 41 GGAAGGGGTCCCGAAGCCCCCTGCAGGAACTCTACAACCCA GGAAGGGGTCCCGAAGCCCCCTTCAGGAACTCTACAACCCA < 41bp 0.808258203341044 0.499955990344924 0.06725481 0.015154272 prediction 0.616516406682087 Functional Loss - CHST11 ENSG00000171310 CDS Human protein_coding chr12:104995743 chr12:104995745 synonymous SNV . 0 23 hm5C_associated_SNPs_53403 0 0 0 0 2 CHST11 chr12:104995769 5'GT 104995769 Upstream 25bp
chr9 128094293 128094293 1 + G T LIHC 128094290 + 128094270 128094310 41 ACATCTGATGATACGGATGTCAGGGAGGTCAGTTCCCGCCC ACATCTGATGATACGGATGTCAGTGAGGTCAGTTCCCGCCC < 41bp 0.872002882890065 0.563770011268257 0.9020808 0.40851656 prediction 0.616465743243616 Functional Loss - GAPVD1 ENSG00000165219 CDS Human protein_coding chr9:128094290 chr9:128094293 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_53405 0 0 1 0 2 GAPVD1 chr9:128094205 3'AG 128094205 Downstream 89bp
chr9 128094293 128094293 1 + G T LIHC 128094290 + 128094270 128094310 41 ACATCTGATGATACGGATGTCAGGGAGGTCAGTTCCCGCCC ACATCTGATGATACGGATGTCAGTGAGGTCAGTTCCCGCCC < 41bp 0.872002882890065 0.563770011268257 0.9020808 0.40851656 prediction 0.616465743243616 Functional Loss - GAPVD1 ENSG00000165219 CDS Human protein_coding chr9:128094290 chr9:128094293 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_53405 0 0 1 0 2 GAPVD1 chr9:128094339 5'GT 128094339 Upstream 47bp
chr2 73450605 73450605 1 + G T UCEC 73450603 + 73450583 73450623 41 ACACTCTGGAGTTGAAGCCTCAGGACCGTGAGCAGCTTGAC ACACTCTGGAGTTGAAGCCTCATGACCGTGAGCAGCTTGAC < 41bp 0.832081080229509 0.523850275524626 0.603546 0.08792734 prediction 0.616461609409765 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73450603 chr2:73450605 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_53406 0 0 1 3 2 SMYD5 chr2:73450554 3'AG 73450554 Downstream 52bp
chr2 73450605 73450605 1 + G T UCEC 73450603 + 73450583 73450623 41 ACACTCTGGAGTTGAAGCCTCAGGACCGTGAGCAGCTTGAC ACACTCTGGAGTTGAAGCCTCATGACCGTGAGCAGCTTGAC < 41bp 0.832081080229509 0.523850275524626 0.603546 0.08792734 prediction 0.616461609409765 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73450603 chr2:73450605 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_53406 0 0 1 3 2 SMYD5 chr2:73450660 5'GT 73450660 Upstream 56bp
chr15 23261815 23261815 1 + G T UCEC 23261813 + 23261793 23261833 41 TGCCCTCTGAGGTGGAGCTGCAGCACCTGAGGAAGGAACTA TGCCCTCTGAGGTGGAGCTGCATCACCTGAGGAAGGAACTA < 41bp 0.8082256565895 0.476756868127966 0.50530726 0.15034032 prediction 0.616451313178999 Functional Loss - GOLGA8IP ENSG00000153666 CDS Human other chr15:23261813 chr15:23261815 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_53408 0 0 0 0 1 GOLGA8IP chr15:23261763 3'AG 23261763 Downstream 53bp
chr5 78586049 78586049 1 + G T UCEC 78586046 + 78586026 78586066 41 ACATGGCTGTACTGTCTATTCAAGATCTTACTGTCAAGTAC ACATGGCTGTACTGTCTATTCAATATCTTACTGTCAAGTAC < 41bp 0.808223133934917 0.447357963584656 0.16596508 0.05903235 prediction 0.616446267869834 Functional Loss - JMY ENSG00000152409 CDS Human protein_coding chr5:78586046 chr5:78586049 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_53409 0 0 1 0 1 JMY chr5:78586094 5'GT 78586094 Upstream 46bp
chr11 71846779 71846779 1 + G T rs372968962 71846776 + 71846756 71846796 41 GAGCAAGCTGGTGTCAGAGCCTGGACCTACAGCGCTGTTGG GAGCAAGCTGGTGTCAGAGCCTGTACCTACAGCGCTGTTGG < 41bp 0.808212959993983 0.479488171117959 0.6574216 0.09193355 prediction 0.616425919987966 Functional Loss - FOLR3 ENSG00000110203 UTR5 Human protein_coding chr11:71846776 chr11:71846779 . . 0 24 hm5C_associated_SNPs_53411 0 0 0 0 1 FOLR3 chr11:71846814 5'GT 71846814 Upstream 36bp
chr15 38591588 38591588 1 + G T LUAD 38591585 + 38591565 38591605 41 CTATTTTAGTAATAGTTATGCACGAGTGCGAGCTGTGGTGA CTATTTTAGTAATAGTTATGCACTAGTGCGAGCTGTGGTGA < 41bp 0.808163732219891 0.46364249610013 0.15850607 0.06845629 prediction 0.616327464439783 Functional Loss - SPRED1 ENSG00000166068 CDS Human protein_coding chr15:38591585 chr15:38591588 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53417 0 0 1 0 1 SPRED1 chr15:38591574 3'AG 38591574 Downstream 15bp
chr7 148311163 148311163 1 + G T LUAD 148311161 + 148311141 148311181 41 ACCCACACCAAAACATGAACCGGGGGATGGAATTTATTGCT ACCCACACCAAAACATGAACCGTGGGATGGAATTTATTGCT < 41bp 0.831539740319114 0.523388350318495 0.91800964 0.265343 prediction 0.616302780001238 Functional Loss - C7orf33 ENSG00000170279 CDS Human protein_coding chr7:148311161 chr7:148311163 synonymous SNV . 0 23 hm5C_associated_SNPs_53419 0 0 0 0 1 C7orf33 chr7:148311134 3'AG 148311134 Downstream 30bp
chr17 76083026 76083026 1 + A C LUSC 76083022 + 76083002 76083042 41 GCTCGTGAAGCAGCCACCACCGCCACCGCCCCCGCCGCACC GCTCGTGAAGCAGCCACCACCGCCCCCGCCCCCGCCGCACC < 41bp 0.808145747291287 0.398192893115738 0.75513667 0.57034945 prediction 0.616291494582574 Functional Loss - TNRC6C ENSG00000078687 CDS Human protein_coding chr17:76083022 chr17:76083026 synonymous SNV . 0 25 hm5C_associated_SNPs_53420 0 0 0 0 1 TNRC6C chr17:76082934 3'AG 76082934 Downstream 93bp
chr17 6920612 6920612 1 - C A PAAD 6920614 - 6920594 6920634 41 GGAGAGGAGAGGAGGATCAGCAGAGGTCATGAGAAGGCCAG GGAGAGGAGAGGAGGATCAGCATAGGTCATGAGAAGGCCAG < 41bp 0.843303055264133 0.535163010958001 0.9021071 0.7556037 prediction 0.616280088612264 Functional Loss - C17orf49 ENSG00000161939;ENSG00000258315 CDS Human other chr17:6920614 chr17:6920612 nonsynonymous SNV 0.971 1 23 hm5C_associated_SNPs_53421 0 0 0 0 1 MIR497HG;RNASEK-C17orf49 chr17:6920707 3'AG 6920707 Downstream 96bp
chr10 104160088 104160088 1 + G T STAD 104160086 + 104160066 104160106 41 AGACGAGTGTGGTGAGCTTTCTGCTGCGGGTAGGTGCAGAC AGACGAGTGTGGTGAGCTTTCTTCTGCGGGTAGGTGCAGAC < 41bp 0.818834655710506 0.510703994212886 0.58099437 0.47660756 prediction 0.616261322995241 Functional Loss - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160086 chr10:104160088 synonymous SNV . 0 23 hm5C_associated_SNPs_53422 0 0 1 0 1 NFKB2 chr10:104160035 3'AG 104160035 Downstream 54bp
chr16 67914984 67914984 1 + G T UCEC 67914982 + 67914962 67915002 41 TTGGCCTGTCCTCCCAGCCCCAGGAATGGCCTTCAGGAAAA TTGGCCTGTCCTCCCAGCCCCATGAATGGCCTTCAGGAAAA < 41bp 0.830398782983516 0.522279000526585 0.8694807 0.14879155 prediction 0.616239564913862 Functional Loss - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914982 chr16:67914984 nonsynonymous SNV 0.964 4 23 hm5C_associated_SNPs_53423 0 0 1 0 2 EDC4 chr16:67914979 3'AG 67914979 Downstream 6bp
chr16 67914984 67914984 1 + G T UCEC 67914982 + 67914962 67915002 41 TTGGCCTGTCCTCCCAGCCCCAGGAATGGCCTTCAGGAAAA TTGGCCTGTCCTCCCAGCCCCATGAATGGCCTTCAGGAAAA < 41bp 0.830398782983516 0.522279000526585 0.8694807 0.14879155 prediction 0.616239564913862 Functional Loss - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914982 chr16:67914984 nonsynonymous SNV 0.964 4 23 hm5C_associated_SNPs_53423 0 0 1 0 2 EDC4 chr16:67915083 5'GT 67915083 Upstream 100bp
chr11 60689262 60689262 1 + G T UCEC 60689260 + 60689240 60689280 41 TTCCAGGTGATTACCTCGCCCAGGGCCTGAAGCTCAGCCCT TTCCAGGTGATTACCTCGCCCATGGCCTGAAGCTCAGCCCT < 41bp 0.84005464520344 0.531947257740078 0.9089128 0.5535193 prediction 0.616214774926723 Functional Loss - TMEM109 ENSG00000110108 CDS Human protein_coding chr11:60689260 chr11:60689262 nonsynonymous SNV 0.964 0 23 hm5C_associated_SNPs_53425 0 0 1 0 1 TMEM109 chr11:60689246 3'AG 60689246 Downstream 17bp
chr3 10242074 10242074 1 + G T LUAD 10242072 + 10242052 10242092 41 GGGAAACCGGCTCCTGAAATCAGGTGTCCCATTCCAGCCTT GGGAAACCGGCTCCTGAAATCATGTGTCCCATTCCAGCCTT < 41bp 0.837129729932848 0.529026356499676 0.9418794 0.8213857 prediction 0.616206746866344 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10242072 chr3:10242074 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_53427 0 0 0 0 1 IRAK2 chr3:10242053 3'AG 10242053 Downstream 22bp
chr15 92663743 92663743 1 + G T ESCA 92663741 + 92663721 92663761 41 CTCTCAAACCCTGTGTTCACCTGCATCATCCTGGCCGCCTG CTCTCAAACCCTGTGTTCACCTTCATCATCCTGGCCGCCTG < 41bp 0.808101089427706 0.493327224255756 0.261218 0.09803522 prediction 0.616202178855412 Functional Loss - SLCO3A1 ENSG00000176463 CDS Human protein_coding chr15:92663741 chr15:92663743 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_53428 0 0 1 1 1 SLCO3A1 chr15:92663695 3'AG 92663695 Downstream 49bp
chr1 33746058 33746058 1 + G T UCEC 33746056 + 33746036 33746076 41 GCCAAGGAGGGCAAGACGTACAGGTGGGGGTCTTGGCGGGA GCCAAGGAGGGCAAGACGTACATGTGGGGGTCTTGGCGGGA < 41bp 0.808092060363642 0.491137660549478 0.85481834 0.47638795 prediction 0.616184120727284 Functional Loss - ZNF362 ENSG00000160094 CDS Human protein_coding chr1:33746056 chr1:33746058 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_53431 0 0 0 0 1 ZNF362 chr1:33746058 5'GT 33746058 Upstream 1bp
chr1 21889729 21889729 1 + A T LUAD 21889725 + 21889705 21889745 41 ACTGAGCGTTCCCGGTGCAACACCACCCAGGGGAACGAGGT ACTGAGCGTTCCCGGTGCAACACCTCCCAGGGGAACGAGGT < 41bp 0.818223265283186 0.51014845887567 0.4128352 0.35672987 prediction 0.616149612815033 Functional Loss - ALPL ENSG00000162551 CDS Human protein_coding chr1:21889725 chr1:21889729 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_53433 0 0 0 0 1 ALPL chr1:21889777 5'GT 21889777 Upstream 49bp
chr15 73852150 73852150 1 + G T UVM 73852148 + 73852128 73852168 41 TGAACAATCTGCATGGGGTGCAGAAGAGTTAGGCCCCTTCC TGAACAATCTGCATGGGGTGCATAAGAGTTAGGCCCCTTCC < 41bp 0.832299350818895 0.524234935899366 0.23908538 0.031107903 prediction 0.616128829839059 Functional Loss - REC114 ENSG00000183324 CDS Human protein_coding chr15:73852148 chr15:73852150 stopgain 0.112 0 23 hm5C_associated_SNPs_53434 0 0 0 0 1 REC114 chr15:73852093 3'AG 73852093 Downstream 58bp
chr11 3647769 3647769 1 + A C rs573886587 3647765 + 3647745 3647785 41 GGCTTGCCCCCATGCACTGCCGGGACGCCTCCCAAGCGGCT GGCTTGCCCCCATGCACTGCCGGGCCGCCTCCCAAGCGGCT < 41bp 0.808011191915833 0.475844608414126 0.8036766 0.42188436 prediction 0.616022383831666 Functional Loss - TRPC2 ENSG00000182048 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3647765 chr11:3647769 . . 0 25 hm5C_associated_SNPs_53437 0 0 0 0 1 TRPC2 chr11:3647810 5'GT 3647810 Upstream 42bp
chr11 70189796 70189796 1 + G T SARC 70189793 + 70189773 70189813 41 AGGTACAAACTCTTAATGAGCAGGATTGGGAACGTGCCCAG AGGTACAAACTCTTAATGAGCAGTATTGGGAACGTGCCCAG < 41bp 0.86903534306699 0.561051126562611 0.7218791 0.2847457 prediction 0.615968433008758 Functional Loss - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70189793 chr11:70189796 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_53440 0 0 1 0 1 PPFIA1 chr11:70189775 3'AG 70189775 Downstream 22bp
chr15 101432805 101432805 1 + G T GBM 101432803 + 101432783 101432823 41 TAGAACCCTCAGATACTTTGCAGGGTGGGCAGACAAAATCC TAGAACCCTCAGATACTTTGCATGGTGGGCAGACAAAATCC < 41bp 0.835715727992585 0.527763751772234 0.88037694 0.21195164 prediction 0.6159039524407 Functional Loss - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101432803 chr15:101432805 nonsynonymous SNV 0.969 4 23 hm5C_associated_SNPs_53443 0 0 0 0 2 ALDH1A3 chr15:101432715 3'AG 101432715 Downstream 91bp
chr15 101432805 101432805 1 + G T GBM 101432803 + 101432783 101432823 41 TAGAACCCTCAGATACTTTGCAGGGTGGGCAGACAAAATCC TAGAACCCTCAGATACTTTGCATGGTGGGCAGACAAAATCC < 41bp 0.835715727992585 0.527763751772234 0.88037694 0.21195164 prediction 0.6159039524407 Functional Loss - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101432803 chr15:101432805 nonsynonymous SNV 0.969 4 23 hm5C_associated_SNPs_53443 0 0 0 0 2 ALDH1A3 chr15:101432844 5'GT 101432844 Upstream 40bp
chr5 139750738 139750738 1 + G T UCEC 139750736 + 139750716 139750756 41 TATATGGGGGTGGCAGCGCTCAGCAGCATTCAGGTGAGCCC TATATGGGGGTGGCAGCGCTCATCAGCATTCAGGTGAGCCC < 41bp 0.807910713057971 0.490337600060935 0.53021526 0.060661674 prediction 0.615821426115942 Functional Loss - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139750736 chr5:139750738 nonsynonymous SNV 0.705 3 23 hm5C_associated_SNPs_53447 0 0 0 0 2 SLC4A9 chr5:139750680 3'AG 139750680 Downstream 59bp
chr5 139750738 139750738 1 + G T UCEC 139750736 + 139750716 139750756 41 TATATGGGGGTGGCAGCGCTCAGCAGCATTCAGGTGAGCCC TATATGGGGGTGGCAGCGCTCATCAGCATTCAGGTGAGCCC < 41bp 0.807910713057971 0.490337600060935 0.53021526 0.060661674 prediction 0.615821426115942 Functional Loss - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139750736 chr5:139750738 nonsynonymous SNV 0.705 3 23 hm5C_associated_SNPs_53447 0 0 0 0 2 SLC4A9 chr5:139750748 5'GT 139750748 Upstream 11bp
chr19 1271175 1271175 1 + G T LUSC 1271172 + 1271152 1271192 41 AGACAGGGAGACCCAGAGATCTCGGGGATTTGGGTTTGTCA AGACAGGGAGACCCAGAGATCTCTGGGATTTGGGTTTGTCA < 41bp 0.807906574390133 0.432759722337101 0.87983 0.5551995 prediction 0.615813148780266 Functional Loss - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1271172 chr19:1271175 nonsynonymous SNV 0.962 3 24 hm5C_associated_SNPs_53448 0 0 1 1 3 CIRBP chr19:1271120 3'AG 1271120 Downstream 56bp
chr19 1271175 1271175 1 + G T LUSC 1271172 + 1271152 1271192 41 AGACAGGGAGACCCAGAGATCTCGGGGATTTGGGTTTGTCA AGACAGGGAGACCCAGAGATCTCTGGGATTTGGGTTTGTCA < 41bp 0.807906574390133 0.432759722337101 0.87983 0.5551995 prediction 0.615813148780266 Functional Loss - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1271172 chr19:1271175 nonsynonymous SNV 0.962 3 24 hm5C_associated_SNPs_53448 0 0 1 1 3 CIRBP chr19:1271139 3'AG 1271139 Downstream 37bp
chr19 1271175 1271175 1 + G T LUSC 1271172 + 1271152 1271192 41 AGACAGGGAGACCCAGAGATCTCGGGGATTTGGGTTTGTCA AGACAGGGAGACCCAGAGATCTCTGGGATTTGGGTTTGTCA < 41bp 0.807906574390133 0.432759722337101 0.87983 0.5551995 prediction 0.615813148780266 Functional Loss - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1271172 chr19:1271175 nonsynonymous SNV 0.962 3 24 hm5C_associated_SNPs_53448 0 0 1 1 3 CIRBP chr19:1271245 5'GT 1271245 Upstream 71bp
chr12 53671697 53671697 1 + G T UCEC 53671695 + 53671675 53671715 41 TGTACGGTGTCTCCAGCAGACAGCAGCCTCACTGCAGATCC TGTACGGTGTCTCCAGCAGACATCAGCCTCACTGCAGATCC < 41bp 0.807901962711268 0.486388410240443 0.107575834 0.08064297 prediction 0.615803925422537 Functional Loss - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53671695 chr12:53671697 nonsynonymous SNV 0.959 1 23 hm5C_associated_SNPs_53449 0 0 1 0 2 ESPL1 chr12:53671605 3'AG 53671605 Downstream 93bp
chr12 53671697 53671697 1 + G T UCEC 53671695 + 53671675 53671715 41 TGTACGGTGTCTCCAGCAGACAGCAGCCTCACTGCAGATCC TGTACGGTGTCTCCAGCAGACATCAGCCTCACTGCAGATCC < 41bp 0.807901962711268 0.486388410240443 0.107575834 0.08064297 prediction 0.615803925422537 Functional Loss - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53671695 chr12:53671697 nonsynonymous SNV 0.959 1 23 hm5C_associated_SNPs_53449 0 0 1 0 2 ESPL1 chr12:53671744 5'GT 53671744 Upstream 48bp
chrX 30738759 30738759 1 + G T COAD 30738756 + 30738736 30738776 41 AGATTTTGGATGCCATGAATCGAGACTGTGGAATTCCACTC AGATTTTGGATGCCATGAATCGATACTGTGGAATTCCACTC < 41bp 0.861156914901902 0.553257211278982 0.89388335 0.17598677 prediction 0.615799407245839 Functional Loss - GK ENSG00000198814 CDS Human protein_coding chrX:30738756 chrX:30738759 nonsynonymous SNV 0.967 5 24 hm5C_associated_SNPs_53450 0 0 0 0 2 GK chrX:30738738 3'AG 30738738 Downstream 22bp
chrX 30738759 30738759 1 + G T COAD 30738756 + 30738736 30738776 41 AGATTTTGGATGCCATGAATCGAGACTGTGGAATTCCACTC AGATTTTGGATGCCATGAATCGATACTGTGGAATTCCACTC < 41bp 0.861156914901902 0.553257211278982 0.89388335 0.17598677 prediction 0.615799407245839 Functional Loss - GK ENSG00000198814 CDS Human protein_coding chrX:30738756 chrX:30738759 nonsynonymous SNV 0.967 5 24 hm5C_associated_SNPs_53450 0 0 0 0 2 GK chrX:30738858 5'GT 30738858 Upstream 100bp
chr4 110757269 110757269 1 + A T LUAD 110757265 + 110757245 110757285 41 CATAGGGTGGGCTAGTTATGCCCCAGATCCTACTGGTGCTA CATAGGGTGGGCTAGTTATGCCCCTGATCCTACTGGTGCTA < 41bp 0.807877288127843 0.492423453652076 0.3398255 0.21368092 prediction 0.615754576255686 Functional Loss - RRH ENSG00000180245 CDS Human protein_coding chr4:110757265 chr4:110757269 synonymous SNV . 0 25 hm5C_associated_SNPs_53452 0 0 1 0 1 RRH chr4:110757316 5'GT 110757316 Upstream 48bp
chr17 4356375 4356375 1 + G T rs11655342 4356373 + 4356353 4356393 41 GGTCATCTTGGGGGCAGAAGCTGCGAGGAGGTACAAGAAAG GGTCATCTTGGGGGCAGAAGCTTCGAGGAGGTACAAGAAAG < 41bp 0.829623711681172 0.521755380243319 0.79012954 0.3096484 prediction 0.615736662875707 Functional Loss - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4356373 chr17:4356375 nonsynonymous SNV 0.012 0 23 hm5C_associated_SNPs_53453 0 0 0 0 1 SPNS3 chr17:4356311 3'AG 4356311 Downstream 65bp
chr2 241516383 241516383 1 + G T COAD 241516380 + 241516360 241516400 41 GACTACTATCCTGACCTCCACAGGGTGCGGCGCTTCCTGGA GACTACTATCCTGACCTCCACAGTGTGCGGCGCTTCCTGGA < 41bp 0.807864291529148 0.426359372125183 0.85596585 0.14124006 prediction 0.615728583058295 Functional Loss - RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241516380 chr2:241516383 nonsynonymous SNV 0.793 0 24 hm5C_associated_SNPs_53454 0 0 1 0 1 RNPEPL1 chr2:241516407 5'GT 241516407 Upstream 25bp
chr5 139574220 139574220 1 + A C STAD 139574216 + 139574196 139574236 41 ACGGCTGGCAGGGTGGACCTCAGGAGCCTCCTAAAACCACA ACGGCTGGCAGGGTGGACCTCAGGCGCCTCCTAAAACCACA < 41bp 0.868399955708751 0.560545126599867 0.8290022 0.79881763 prediction 0.615709658217768 Functional Loss - CYSTM1 ENSG00000120306 CDS Human protein_coding chr5:139574216 chr5:139574220 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_53455 0 0 1 0 1 CYSTM1 chr5:139574237 5'GT 139574237 Upstream 18bp
chr16 55806302 55806302 1 + G T LUSC 55806300 + 55806280 55806320 41 GCACAGGGGATGAACACAGCCCGGGGAACTGGGGTCACCTG GCACAGGGGATGAACACAGCCCTGGGAACTGGGGTCACCTG < 41bp 0.827540242426418 0.519693303881613 0.7856755 0.06980583 prediction 0.615693877089611 Functional Loss - CES1P1 ENSG00000228695 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:55806300 chr16:55806302 . . 0 23 hm5C_associated_SNPs_53456 0 0 0 0 1 CES1P1 chr16:55806281 3'AG 55806281 Downstream 22bp
chr8 105361777 105361777 1 + G T STAD 105361775 + 105361755 105361795 41 CAAGCAGTTTCAAAGCTTGCCAGGGTTTGAGGTTCACTTGA CAAGCAGTTTCAAAGCTTGCCATGGTTTGAGGTTCACTTGA < 41bp 0.831412508134809 0.523570027414245 0.90129495 0.30330485 prediction 0.615684961441128 Functional Loss - DCSTAMP ENSG00000164935 CDS Human protein_coding chr8:105361775 chr8:105361777 nonsynonymous SNV 0.375 3 23 hm5C_associated_SNPs_53457 0 0 0 0 1 DCSTAMP chr8:105361809 5'GT 105361809 Upstream 33bp
chr17 58506826 58506826 1 + G T SARC 58506824 + 58506804 58506844 41 TGGGGGCTGCACAGCAACATCAGCGGCATGAAGGAGCGGCT TGGGGGCTGCACAGCAACATCATCGGCATGAAGGAGCGGCT < 41bp 0.84101099018968 0.533184420225986 0.39768457 0.08310455 prediction 0.615653139927387 Functional Loss - C17orf64 ENSG00000141371 CDS Human protein_coding chr17:58506824 chr17:58506826 nonsynonymous SNV 0.273 1 23 hm5C_associated_SNPs_53459 0 0 0 0 1 C17orf64 chr17:58506918 5'GT 58506918 Upstream 93bp
chr11 66272098 66272098 1 + G T LUSC 66272096 + 66272076 66272116 41 CTCACAGGTGCTGAAGTCCACAGGGGATGTGGCCGGAGGGC CTCACAGGTGCTGAAGTCCACATGGGATGTGGCCGGAGGGC < 41bp 0.842549405142782 0.534738577900462 0.9300786 0.39226288 prediction 0.61562165448464 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66272096 chr11:66272098 nonsynonymous SNV 0.976 4 23 hm5C_associated_SNPs_53462 0 0 1 0 1 DPP3 chr11:66272083 3'AG 66272083 Downstream 16bp
chr11 7091554 7091554 1 + G T COAD 7091551 + 7091531 7091571 41 GTTTGACATCTCTCTGCTGTCAAGATCTCTCCTCTGCTCTT GTTTGACATCTCTCTGCTGTCAATATCTCTCCTCTGCTCTT < 41bp 0.807808295523964 0.442861985511443 0.847291 0.10992929 prediction 0.615616591047928 Functional Loss - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7091551 chr11:7091554 nonsynonymous SNV 0.766 3 24 hm5C_associated_SNPs_53463 0 0 0 0 1 NLRP14 chr11:7091517 3'AG 7091517 Downstream 38bp
chr19 10940880 10940880 1 + G T STAD 10940877 + 10940857 10940897 41 AGCAGTGAGGGGCCCCACTCCAGGGCCCCCCCTGATTCCTG AGCAGTGAGGGGCCCCACTCCAGTGCCCCCCCTGATTCCTG < 41bp 0.807787619910186 0.448571026310954 0.8496469 0.12569654 prediction 0.615575239820371 Functional Loss - DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940877 chr19:10940880 nonsynonymous SNV 0.916 5 24 hm5C_associated_SNPs_53466 0 0 1 0 1 DNM2 chr19:10940803 3'AG 10940803 Downstream 78bp
chrX 134983792 134983792 1 + G T UCEC 134983789 + 134983769 134983809 41 AAGAAACATTCCAGAAAATCCAAGAGACACTCTTCATCTAA AAGAAACATTCCAGAAAATCCAATAGACACTCTTCATCTAA < 41bp 0.807748766087129 0.452374392704658 0.2807402 0.06501955 prediction 0.615497532174258 Functional Loss - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134983789 chrX:134983792 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_53467 0 0 0 0 2 SAGE1 chrX:134983718 3'AG 134983718 Downstream 75bp
chrX 134983792 134983792 1 + G T UCEC 134983789 + 134983769 134983809 41 AAGAAACATTCCAGAAAATCCAAGAGACACTCTTCATCTAA AAGAAACATTCCAGAAAATCCAATAGACACTCTTCATCTAA < 41bp 0.807748766087129 0.452374392704658 0.2807402 0.06501955 prediction 0.615497532174258 Functional Loss - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134983789 chrX:134983792 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_53467 0 0 0 0 2 SAGE1 chrX:134983850 5'GT 134983850 Upstream 59bp
chr17 12647697 12647697 1 + G T UCEC 12647695 + 12647675 12647715 41 AGCTCCAAATCCTCAGCCAGCAGCAGCAGCAGCAGCAACAC AGCTCCAAATCCTCAGCCAGCATCAGCAGCAGCAGCAACAC < 41bp 0.807742558978943 0.471395288884352 0.48093846 0.12113184 prediction 0.615485117957886 Functional Loss - MYOCD ENSG00000141052;ENSG00000273452 CDS Human other chr17:12647695 chr17:12647697 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_53471 0 0 0 0 1 MYOCD chr17:12647753 5'GT 12647753 Upstream 57bp
chr10 118960684 118960684 1 + A C STAD 118960680 + 118960660 118960700 41 CTTTCTCCAGTGGTGGAAGACAGAAAACAGGATCTCCAGGG CTTTCTCCAGTGGTGGAAGACAGACAACAGGATCTCCAGGG < 41bp 0.807732826211254 0.435080937011876 0.22831514 0.17665237 prediction 0.615465652422507 Functional Loss - KCNK18 ENSG00000186795 CDS Human protein_coding chr10:118960680 chr10:118960684 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_53473 0 0 0 0 1 KCNK18 chr10:118960670 3'AG 118960670 Downstream 15bp
chr19 10385519 10385519 1 + G T LUSC 10385517 + 10385497 10385537 41 GGCTCCGTGCTGGTGACATGCAGCACCTCCTGTGACCAGCC GGCTCCGTGCTGGTGACATGCATCACCTCCTGTGACCAGCC < 41bp 0.830023402805483 0.522307541494169 0.21231282 0.10778877 prediction 0.615431722622628 Functional Loss - ICAM1 ENSG00000090339 CDS Human protein_coding chr19:10385517 chr19:10385519 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_53475 0 0 1 0 1 ICAM1 chr19:10385441 3'AG 10385441 Downstream 79bp
chr19 36273671 36273671 1 + G T LUSC 36273668 + 36273648 36273688 41 CTGCTCCCACCCCCAGGACCCTGGAGTACCTGCTGAGGCAC CTGCTCCCACCCCCAGGACCCTGTAGTACCTGCTGAGGCAC < 41bp 0.880031220243058 0.572371062136964 0.45199925 0.05361992 prediction 0.615320316212187 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36273668 chr19:36273671 stopgain 0.998 1 24 hm5C_associated_SNPs_53481 0 0 1 0 1 ARHGAP33 chr19:36273664 3'AG 36273664 Downstream 8bp
chr11 129993624 129993624 1 + G T SKCM 129993622 + 129993602 129993642 41 TATGGTGGCTGCGGCGGCAACAGGAACAATTTTGAGTCTGA TATGGTGGCTGCGGCGGCAACATGAACAATTTTGAGTCTGA < 41bp 0.807656788094082 0.498253198837655 0.64251024 0.26301706 prediction 0.615313576188165 Functional Loss - APLP2 ENSG00000084234 CDS Human protein_coding chr11:129993622 chr11:129993624 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_53482 0 0 1 0 1 APLP2 chr11:129993674 5'GT 129993674 Upstream 51bp
chr21 46387078 46387078 1 + G T rs2294168 46387076 + 46387056 46387096 41 CTGCTGGGGCTCGAGGCTGGCAGCCGGCGCCAAGCCCGCAG CTGCTGGGGCTCGAGGCTGGCATCCGGCGCCAAGCCCGCAG < 41bp 0.828891086791386 0.521256345010328 0.7385279 0.4125307 prediction 0.615269483562116 Functional Loss - FAM207A ENSG00000160256 CDS Human protein_coding chr21:46387076 chr21:46387078 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_53486 0 0 1 0 1 FAM207A chr21:46387096 5'GT 46387096 Upstream 19bp
chr21 47985676 47985676 1 + G T UCEC 47985673 + 47985653 47985693 41 ACCGGGTACTACACCGTTTACGGGGAGGAGGCGCTTCATGC ACCGGGTACTACACCGTTTACGGTGAGGAGGCGCTTCATGC < 41bp 0.807630393184535 0.450900468485249 0.88680863 0.47124434 prediction 0.61526078636907 Functional Loss - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47985673 chr21:47985676 synonymous SNV . 0 24 hm5C_associated_SNPs_53487 0 0 1 0 1 DIP2A chr21:47985626 3'AG 47985626 Downstream 51bp
chr19 3527734 3527734 1 + G T LIHC 3527732 + 3527712 3527752 41 AGGACGACTTCTACCTCAATCTGGTGGACTGGTCGTCCCTC AGGACGACTTCTACCTCAATCTTGTGGACTGGTCGTCCCTC < 41bp 0.827033034698038 0.51942953289716 0.5638547 0.30055487 prediction 0.615207003601755 Functional Loss - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3527732 chr19:3527734 synonymous SNV . 0 23 hm5C_associated_SNPs_53491 0 0 1 0 1 FZR1 chr19:3527812 5'GT 3527812 Upstream 79bp
chr11 33566887 33566887 1 + G T LUSC 33566885 + 33566865 33566905 41 CTGGCAAAATGGCATCCAACCTGGAGTGTCAGATGTCCAGT CTGGCAAAATGGCATCCAACCTTGAGTGTCAGATGTCCAGT < 41bp 0.80758103368608 0.488564566330439 0.30111945 0.017858177 prediction 0.615162067372159 Functional Loss - KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33566885 chr11:33566887 synonymous SNV . 0 23 hm5C_associated_SNPs_53495 0 0 0 0 1 KIAA1549L chr11:33566924 5'GT 33566924 Upstream 38bp
chrX 129474326 129474326 1 + G T BRCA 129474324 + 129474304 129474344 41 ACGGCGGCCGTGATTGTAAGCGGAGTAAGCAAACACCTCCA ACGGCGGCCGTGATTGTAAGCGTAGTAAGCAAACACCTCCA < 41bp 0.807570457046976 0.493722715198407 0.90517163 0.20304295 prediction 0.615140914093951 Functional Loss - SLC25A14 ENSG00000102078 CDS Human protein_coding chrX:129474324 chrX:129474326 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_53497 0 0 0 0 1 SLC25A14 chrX:129474327 5'GT 129474327 Upstream 2bp
chr2 172945060 172945060 1 + G T SARC 172945058 + 172945038 172945078 41 CTGGGTGCTGTGTTACAGGTCGGCGCAGTTCGAGCACACGG CTGGGTGCTGTGTTACAGGTCGTCGCAGTTCGAGCACACGG < 41bp 0.809875586757927 0.502316933048799 0.2672338 0.07341659 prediction 0.615117307418256 Functional Loss - METAP1D ENSG00000172878 CDS Human protein_coding chr2:172945058 chr2:172945060 nonsynonymous SNV 0.779 4 23 hm5C_associated_SNPs_53498 0 0 0 0 1 METAP1D chr2:172945056 3'AG 172945056 Downstream 5bp
chr16 1412863 1412863 1 + A C READ 1412859 + 1412839 1412879 41 TCTCAAAGGAGATCAAAAGGCTGAAAGGTTTGCTCACCCAG TCTCAAAGGAGATCAAAAGGCTGACAGGTTTGCTCACCCAG < 41bp 0.807535937157146 0.411768300198902 0.16502875 0.09230614 prediction 0.615071874314293 Functional Loss - GNPTG ENSG00000090581 CDS Human protein_coding chr16:1412859 chr16:1412863 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_53502 0 0 1 0 2 GNPTG chr16:1412826 3'AG 1412826 Downstream 38bp
chr16 1412863 1412863 1 + A C READ 1412859 + 1412839 1412879 41 TCTCAAAGGAGATCAAAAGGCTGAAAGGTTTGCTCACCCAG TCTCAAAGGAGATCAAAAGGCTGACAGGTTTGCTCACCCAG < 41bp 0.807535937157146 0.411768300198902 0.16502875 0.09230614 prediction 0.615071874314293 Functional Loss - GNPTG ENSG00000090581 CDS Human protein_coding chr16:1412859 chr16:1412863 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_53502 0 0 1 0 2 GNPTG chr16:1412907 5'GT 1412907 Upstream 45bp
chr8 10387070 10387070 1 + G T UCEC 10387068 + 10387048 10387088 41 AACTCGGTATTCCAGAATCACAGGGGGGATGGAGGCGGAGG AACTCGGTATTCCAGAATCACATGGGGGATGGAGGCGGAGG < 41bp 0.841140045000998 0.533619355695753 0.9246795 0.7483661 prediction 0.61504137861049 Functional Loss - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10387068 chr8:10387070 nonsynonymous SNV 0.333 4 23 hm5C_associated_SNPs_53505 0 0 0 0 1 PRSS55 chr8:10387017 3'AG 10387017 Downstream 54bp
chr11 15197607 15197607 1 + G T UCEC 15197605 + 15197585 15197625 41 AGCGAGTACAGTGCTGTCAGCAGGAACTCCTTGAAGGAAAT AGCGAGTACAGTGCTGTCAGCATGAACTCCTTGAAGGAAAT < 41bp 0.80746871655964 0.474609689686742 0.8877777 0.2541585 prediction 0.614937433119279 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15197605 chr11:15197607 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_53508 0 0 0 0 1 INSC chr11:15197632 5'GT 15197632 Upstream 26bp
chr4 123542076 123542076 1 - C A LUSC 123542079 - 123542059 123542099 41 TGGTCCACAAATCAAGCTCCCAAGGTCAAGATCGCCACATG TGGTCCACAAATCAAGCTCCCAATGTCAAGATCGCCACATG < 41bp 0.80746661891061 0.441385068448409 0.12507623 0.0075148344 prediction 0.61493323782122 Functional Loss - IL21 ENSG00000138684 CDS Human protein_coding chr4:123542079 chr4:123542076 nonsynonymous SNV 0.281 3 24 hm5C_associated_SNPs_53509 0 0 0 0 1 IL21 chr4:123541999 5'GT 123541999 Upstream 78bp
chr15 59808970 59808970 1 + G T PRAD 59808967 + 59808947 59808987 41 GGCAAGAAGAGGAGAAGATGCACGGGCGAATCACCAAGCTG GGCAAGAAGAGGAGAAGATGCACTGGCGAATCACCAAGCTG < 41bp 0.874093626770285 0.566649894192664 0.88720405 0.84067476 prediction 0.614887465155242 Functional Loss - FAM81A ENSG00000157470 CDS Human protein_coding chr15:59808967 chr15:59808970 nonsynonymous SNV 0.869 2 24 hm5C_associated_SNPs_53512 0 0 0 0 1 FAM81A chr15:59809039 5'GT 59809039 Upstream 70bp
chr12 110353309 110353309 1 + G T UCEC 110353307 + 110353287 110353327 41 AGCTCTCAGATGCCCTGCTGCAGCAGGAGGCGGAGACTATG AGCTCTCAGATGCCCTGCTGCATCAGGAGGCGGAGACTATG < 41bp 0.807427787565258 0.484549452905601 0.85660434 0.23246655 prediction 0.614855575130517 Functional Loss - TCHP ENSG00000139437 CDS Human protein_coding chr12:110353307 chr12:110353309 nonsynonymous SNV 0.989 2 23 hm5C_associated_SNPs_53514 0 0 1 0 1 TCHP chr12:110353351 5'GT 110353351 Upstream 43bp
chr3 14965551 14965551 1 - C A LUAD 14965554 - 14965534 14965574 41 AAAAGGCACTGCCCGAGAAGCGGGGTGAAGACAGCGGGAAG AAAAGGCACTGCCCGAGAAGCGGTGTGAAGACAGCGGGAAG < 41bp 0.875274273684911 0.567849389459268 0.9343035 0.30987927 prediction 0.614849768451287 Functional Loss - FGD5 ENSG00000154783 CDS Human antisense chr3:14965554 chr3:14965551 nonsynonymous SNV 0.584 1 24 hm5C_associated_SNPs_53515 0 0 0 0 2 FGD5 chr3:14965484 5'GT 14965484 Upstream 68bp
chr3 14965551 14965551 1 - C A LUAD 14965554 - 14965534 14965574 41 AAAAGGCACTGCCCGAGAAGCGGGGTGAAGACAGCGGGAAG AAAAGGCACTGCCCGAGAAGCGGTGTGAAGACAGCGGGAAG < 41bp 0.875274273684911 0.567849389459268 0.9343035 0.30987927 prediction 0.614849768451287 Functional Loss - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14965554 chr3:14965551 nonsynonymous SNV 0.584 1 24 hm5C_associated_SNPs_53515 0 0 0 0 2 FGD5 chr3:14965605 3'AG 14965605 Downstream 55bp
chr2 61118917 61118917 1 + G T ESCA 61118914 + 61118894 61118934 41 GCGATCAGCAGGCAGCATTCCAGGGGAGCACAGCACAGACA GCGATCAGCAGGCAGCATTCCAGTGGAGCACAGCACAGACA < 41bp 0.866568552934034 0.559153604065329 0.9315147 0.32706222 prediction 0.614829897737411 Functional Loss - REL ENSG00000162924 CDS Human protein_coding chr2:61118914 chr2:61118917 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_53518 0 0 1 0 2 REL chr2:61118818 3'AG 61118818 Downstream 100bp
chr2 61118917 61118917 1 + G T ESCA 61118914 + 61118894 61118934 41 GCGATCAGCAGGCAGCATTCCAGGGGAGCACAGCACAGACA GCGATCAGCAGGCAGCATTCCAGTGGAGCACAGCACAGACA < 41bp 0.866568552934034 0.559153604065329 0.9315147 0.32706222 prediction 0.614829897737411 Functional Loss - REL ENSG00000162924 CDS Human protein_coding chr2:61118914 chr2:61118917 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_53518 0 0 1 0 2 REL chr2:61118960 5'GT 61118960 Upstream 44bp
chr19 51767348 51767348 1 + G T KIRC 51767345 + 51767325 51767365 41 TGATGCTTCCACTGCTACAGCTGGGTAAGTAAGGTGAGAAG TGATGCTTCCACTGCTACAGCTGTGTAAGTAAGGTGAGAAG < 41bp 0.807390645243067 0.447072943759788 0.67189044 0.1642032 prediction 0.614781290486133 Functional Loss - SIGLECL1 ENSG00000179213 CDS Human protein_coding chr19:51767345 chr19:51767348 stopgain 0.055 0 24 hm5C_associated_SNPs_53520 0 0 0 0 2 SIGLECL1 chr19:51767348 5'GT 51767348 Upstream 1bp
chr19 51767348 51767348 1 + G T KIRC 51767345 + 51767325 51767365 41 TGATGCTTCCACTGCTACAGCTGGGTAAGTAAGGTGAGAAG TGATGCTTCCACTGCTACAGCTGTGTAAGTAAGGTGAGAAG < 41bp 0.807390645243067 0.447072943759788 0.67189044 0.1642032 prediction 0.614781290486133 Functional Loss - SIGLECL1 ENSG00000179213 CDS Human antisense chr19:51767345 chr19:51767348 stopgain 0.055 0 24 hm5C_associated_SNPs_53520 0 0 0 0 2 SIGLECL1 chr19:51767357 5'GT 51767357 Upstream 10bp
chrX 134655025 134655025 1 + G T UCEC 134655022 + 134655002 134655042 41 AAAGGCGCTGTGGAGTTATTCTTGAAGGTAAAGGGAGGGGA AAAGGCGCTGTGGAGTTATTCTTTAAGGTAAAGGGAGGGGA < 41bp 0.807376162150528 0.45839217625609 0.07932192 0.016502112 prediction 0.614752324301057 Functional Loss - INTS6L ENSG00000165359 CDS Human protein_coding chrX:134655022 chrX:134655025 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53523 0 0 1 0 1 INTS6L chrX:134655028 5'GT 134655028 Upstream 4bp
chr12 105514362 105514362 1 + G T UCEC 105514359 + 105514339 105514379 41 ACCCAAAATTATAGAGACAACTGGAGTTCATTTTCAGGTAA ACCCAAAATTATAGAGACAACTGTAGTTCATTTTCAGGTAA < 41bp 0.824388204675291 0.517019995799063 0.17962343 0.069779426 prediction 0.614736417752456 Functional Loss - WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105514359 chr12:105514362 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53524 0 0 1 0 2 WASHC4 chr12:105514333 3'AG 105514333 Downstream 30bp
chr12 105514362 105514362 1 + G T UCEC 105514359 + 105514339 105514379 41 ACCCAAAATTATAGAGACAACTGGAGTTCATTTTCAGGTAA ACCCAAAATTATAGAGACAACTGTAGTTCATTTTCAGGTAA < 41bp 0.824388204675291 0.517019995799063 0.17962343 0.069779426 prediction 0.614736417752456 Functional Loss - WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105514359 chr12:105514362 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53524 0 0 1 0 2 WASHC4 chr12:105514375 5'GT 105514375 Upstream 14bp
chr6 133138113 133138113 1 + G T UCEC 133138110 + 133138090 133138130 41 TCCCAATAGGTTGATGACAACAAGAAACTAGGAGAATGGGT TCCCAATAGGTTGATGACAACAATAAACTAGGAGAATGGGT < 41bp 0.813634077972381 0.506278437536277 0.42110682 0.09585923 prediction 0.614711280872208 Functional Loss - RPS12 ENSG00000112306 CDS Human protein_coding chr6:133138110 chr6:133138113 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_53525 0 0 1 1 2 RPS12 chr6:133138099 3'AG 133138099 Downstream 15bp
chr6 133138113 133138113 1 + G T UCEC 133138110 + 133138090 133138130 41 TCCCAATAGGTTGATGACAACAAGAAACTAGGAGAATGGGT TCCCAATAGGTTGATGACAACAATAAACTAGGAGAATGGGT < 41bp 0.813634077972381 0.506278437536277 0.42110682 0.09585923 prediction 0.614711280872208 Functional Loss - RPS12 ENSG00000112306 CDS Human protein_coding chr6:133138110 chr6:133138113 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_53525 0 0 1 1 2 RPS12 chr6:133138200 5'GT 133138200 Upstream 88bp
chr22 21988325 21988325 1 + G T UCEC 21988322 + 21988302 21988342 41 TCTGCTCAGGTGCAGCTGCCCAAGAAGCCACTGGTCCCAGA TCTGCTCAGGTGCAGCTGCCCAATAAGCCACTGGTCCCAGA < 41bp 0.879112086010221 0.571756693123339 0.8585615 0.334475 prediction 0.614710785773763 Functional Loss - CCDC116 ENSG00000161180 CDS Human protein_coding chr22:21988322 chr22:21988325 nonsynonymous SNV 0.141 3 24 hm5C_associated_SNPs_53526 0 0 1 0 1 CCDC116 chr22:21988311 3'AG 21988311 Downstream 15bp
chr9 104170255 104170255 1 + G T UCEC 104170252 + 104170232 104170272 41 ATGAGGAGCCAACTGTAAAACAAGAGATTGAAGAAATTGAG ATGAGGAGCCAACTGTAAAACAATAGATTGAAGAAATTGAG < 41bp 0.850132533174921 0.542777720307604 0.2768671 0.13677484 prediction 0.614709625734635 Functional Loss - ZNF189 ENSG00000136870 CDS Human protein_coding chr9:104170252 chr9:104170255 stopgain 1.000 1 24 hm5C_associated_SNPs_53527 0 0 1 0 1 ZNF189 chr9:104170211 3'AG 104170211 Downstream 45bp
chr19 46027374 46027374 1 + G T GBM 46027371 + 46027351 46027391 41 CCAGAATCTGTGCGGAGACCCTGGGAGAAGAACAGCACAAC CCAGAATCTGTGCGGAGACCCTGTGAGAAGAACAGCACAAC < 41bp 0.807342663134333 0.424984328977303 0.67517287 0.08752331 prediction 0.614685326268666 Functional Loss - VASP ENSG00000125753 CDS Human protein_coding chr19:46027371 chr19:46027374 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53530 0 0 1 0 2 VASP chr19:46027355 3'AG 46027355 Downstream 20bp
chr19 46027374 46027374 1 + G T GBM 46027371 + 46027351 46027391 41 CCAGAATCTGTGCGGAGACCCTGGGAGAAGAACAGCACAAC CCAGAATCTGTGCGGAGACCCTGTGAGAAGAACAGCACAAC < 41bp 0.807342663134333 0.424984328977303 0.67517287 0.08752331 prediction 0.614685326268666 Functional Loss - VASP ENSG00000125753 CDS Human protein_coding chr19:46027371 chr19:46027374 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53530 0 0 1 0 2 VASP chr19:46027400 5'GT 46027400 Upstream 27bp
chr5 80074609 80074609 1 + G T LUAD 80074606 + 80074586 80074626 41 ACAGACATCTGAATCAGCTCCGGGAGCAGCTAGTCCTTGAC ACAGACATCTGAATCAGCTCCGGTAGCAGCTAGTCCTTGAC < 41bp 0.807328854522973 0.449358376068737 0.8655151 0.27254057 prediction 0.614657709045946 Functional Loss - MSH3 ENSG00000113318 CDS Human protein_coding chr5:80074606 chr5:80074609 stopgain 0.999 1 24 hm5C_associated_SNPs_53533 0 0 1 0 1 MSH3 chr5:80074539 3'AG 80074539 Downstream 71bp
chr12 109865318 109865318 1 + G T LUAD 109865315 + 109865295 109865335 41 TAAGGCATCAGATCAAATACCTGGGGCTGATGGAGCACCTG TAAGGCATCAGATCAAATACCTGTGGCTGATGGAGCACCTG < 41bp 0.8073200442612 0.432164580891997 0.4153745 0.23611021 prediction 0.6146400885224 Functional Loss - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109865315 chr12:109865318 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53534 0 0 0 0 2 MYO1H chr12:109865274 3'AG 109865274 Downstream 45bp
chr12 109865318 109865318 1 + G T LUAD 109865315 + 109865295 109865335 41 TAAGGCATCAGATCAAATACCTGGGGCTGATGGAGCACCTG TAAGGCATCAGATCAAATACCTGTGGCTGATGGAGCACCTG < 41bp 0.8073200442612 0.432164580891997 0.4153745 0.23611021 prediction 0.6146400885224 Functional Loss - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109865315 chr12:109865318 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53534 0 0 0 0 2 MYO1H chr12:109865391 5'GT 109865391 Upstream 74bp
chr2 233323623 233323623 1 + G T LUSC 233323620 + 233323600 233323640 41 TGCCCCTGTCGTCCGAGACCCACGGAGGCGAAGACGTGGCG TGCCCCTGTCGTCCGAGACCCACTGAGGCGAAGACGTGGCG < 41bp 0.807289590858882 0.444483611772674 0.8907848 0.88948274 prediction 0.614579181717763 Functional Loss - ALPI ENSG00000163295 CDS Human protein_coding chr2:233323620 chr2:233323623 stopgain 0.996 1 24 hm5C_associated_SNPs_53538 0 0 0 0 1 ALPI chr2:233323570 3'AG 233323570 Downstream 54bp
chr6 41898440 41898440 1 + G T THCA 41898438 + 41898418 41898458 41 ATCATCCCTGCACTCTCCAACTGGGAGCAAATCCTCTACGT ATCATCCCTGCACTCTCCAACTTGGAGCAAATCCTCTACGT < 41bp 0.829916819468609 0.522628395407858 0.9307454 0.13661748 prediction 0.614576848121501 Functional Loss - BYSL ENSG00000112578 CDS Human protein_coding chr6:41898438 chr6:41898440 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_53539 0 0 1 0 2 BYSL chr6:41898373 3'AG 41898373 Downstream 68bp
chr6 41898440 41898440 1 + G T THCA 41898438 + 41898418 41898458 41 ATCATCCCTGCACTCTCCAACTGGGAGCAAATCCTCTACGT ATCATCCCTGCACTCTCCAACTTGGAGCAAATCCTCTACGT < 41bp 0.829916819468609 0.522628395407858 0.9307454 0.13661748 prediction 0.614576848121501 Functional Loss - BYSL ENSG00000112578 CDS Human protein_coding chr6:41898438 chr6:41898440 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_53539 0 0 1 0 2 BYSL chr6:41898506 5'GT 41898506 Upstream 67bp
chr5 113831670 113831670 1 + G T LUSC 113831667 + 113831647 113831687 41 TCGAGAAGAGGATTGTTACCCTGGAAACAAAACTAGAGACT TCGAGAAGAGGATTGTTACCCTGTAAACAAAACTAGAGACT < 41bp 0.846001214944666 0.538713073450906 0.58059704 0.28493506 prediction 0.61457628298752 Functional Loss - KCNN2 ENSG00000080709 CDS Human protein_coding chr5:113831667 chr5:113831670 stopgain 1.000 1 24 hm5C_associated_SNPs_53540 0 0 0 0 1 KCNN2 chr5:113831592 3'AG 113831592 Downstream 79bp
chr1 11594530 11594530 1 + G T LUAD 11594527 + 11594507 11594547 41 CAGCAGCTGCAGGCCTTGCCCGAGGGCTCAGTCCTGCGCCG CAGCAGCTGCAGGCCTTGCCCGATGGCTCAGTCCTGCGCCG < 41bp 0.89209252543089 0.584812477492936 0.9340215 0.7584741 prediction 0.614560095875907 Functional Loss - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11594527 chr1:11594530 nonsynonymous SNV 0.764 2 24 hm5C_associated_SNPs_53542 0 0 0 0 1 DISP3 chr1:11594438 3'AG 11594438 Downstream 93bp
chr1 175054626 175054626 1 + G T rs6664276 175054623 + 175054603 175054643 41 AAGCCGATCCTCCTGAATGGCAGGACAGGTGAGAGCTACTT AAGCCGATCCTCCTGAATGGCAGTACAGGTGAGAGCTACTT < 41bp 0.807272175576269 0.435887073339045 0.52410406 0.16775954 prediction 0.614544351152538 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175054623 chr1:175054626 nonsynonymous SNV 0.993 0 24 hm5C_associated_SNPs_53543 0 0 0 0 2 TNN chr1:175054541 3'AG 175054541 Downstream 86bp
chr1 175054626 175054626 1 + G T rs6664276 175054623 + 175054603 175054643 41 AAGCCGATCCTCCTGAATGGCAGGACAGGTGAGAGCTACTT AAGCCGATCCTCCTGAATGGCAGTACAGGTGAGAGCTACTT < 41bp 0.807272175576269 0.435887073339045 0.52410406 0.16775954 prediction 0.614544351152538 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175054623 chr1:175054626 nonsynonymous SNV 0.993 0 24 hm5C_associated_SNPs_53543 0 0 0 0 2 TNN chr1:175054630 5'GT 175054630 Upstream 5bp
chr1 109772147 109772147 1 + G T THYM 109772144 + 109772124 109772164 41 CAGAGCGGTTTGAGAACCTCCGAGAGATTGGGAACCTTCTG CAGAGCGGTTTGAGAACCTCCGATAGATTGGGAACCTTCTG < 41bp 0.85587929904325 0.548607717529032 0.883205 0.13907999 prediction 0.614543163028436 Functional Loss - SARS ENSG00000031698 CDS Human protein_coding chr1:109772144 chr1:109772147 stopgain 0.988 1 24 hm5C_associated_SNPs_53545 0 0 1 0 1 SARS chr1:109772194 5'GT 109772194 Upstream 48bp
chr14 22111151 22111151 1 + G T UCEC 22111148 + 22111128 22111168 41 TTCTGCAGACTCCAATGGCTCAGGAACTGGGAATGCAGTGC TTCTGCAGACTCCAATGGCTCAGTAACTGGGAATGCAGTGC < 41bp 0.841716137786959 0.534482077078359 0.82312167 0.11430016 prediction 0.6144681214172 Functional Loss - OR10G2;OR4E2 ENSG00000256553 UTR5 Human TR_V_gene chr14:22111148 chr14:22111151 . . 0 24 hm5C_associated_SNPs_53546 0 0 0 0 1 OR10G2;OR4E2 chr14:22111235 5'GT 22111235 Upstream 85bp
chr1 1565032 1565032 1 + G T LUAD 1565029 + 1565009 1565049 41 CTCTTCGCAGAGTGCGCGCGCAGGATGAAGAAGTGCATCAG CTCTTCGCAGAGTGCGCGCGCAGTATGAAGAAGTGCATCAG < 41bp 0.860763265832425 0.553529315987126 0.89942145 0.6914214 prediction 0.614467899690597 Functional Loss - MIB2 ENSG00000197530 CDS Human protein_coding chr1:1565029 chr1:1565032 nonsynonymous SNV 0.982 2 24 hm5C_associated_SNPs_53547 0 0 1 0 1 MIB2 chr1:1565084 5'GT 1565084 Upstream 53bp
chr12 6559357 6559357 1 + G T SARC 6559355 + 6559335 6559375 41 CCAGGTCTTCTCGTTCGCAACTGCACCATCACTGCCAATGC CCAGGTCTTCTCGTTCGCAACTTCACCATCACTGCCAATGC < 41bp 0.823570737354163 0.516338678262703 0.11107832 0.052064657 prediction 0.61446411818292 Functional Loss - CD27 ENSG00000139193 CDS Human protein_coding chr12:6559355 chr12:6559357 nonsynonymous SNV 0.961 4 23 hm5C_associated_SNPs_53548 0 0 0 0 1 CD27 chr12:6559339 3'AG 6559339 Downstream 19bp
chr3 131100562 131100562 1 + G T rs115718594 131100560 + 131100540 131100580 41 CCTGCAGGGATTGGGCCTTGCAGCACCGCCCAGGCTCGGAT CCTGCAGGGATTGGGCCTTGCATCACCGCCCAGGCTCGGAT < 41bp 0.830238919430114 0.52303220991861 0.1736972 0.14890635 prediction 0.614413419023007 Functional Loss - NUDT16 ENSG00000198585 UTR5 Human protein_coding chr3:131100560 chr3:131100562 . . 0 23 hm5C_associated_SNPs_53551 0 0 0 0 1 NUDT16 chr3:131100589 5'GT 131100589 Upstream 28bp
chr10 101591389 101591389 1 + G T STAD 101591386 + 101591366 101591406 41 AGGTGAAGTTCTCCATCTACCTGGAGTACCTACAAGCAATA AGGTGAAGTTCTCCATCTACCTGTAGTACCTACAAGCAATA < 41bp 0.807198846016858 0.458355583526331 0.45003933 0.13669208 prediction 0.614397692033716 Functional Loss - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101591386 chr10:101591389 stopgain 0.265 0 24 hm5C_associated_SNPs_53552 0 0 1 0 1 ABCC2 chr10:101591368 3'AG 101591368 Downstream 22bp
chr19 55255490 55255490 1 + A C rs595008 55255486 + 55255466 55255506 41 CTTCGGCTCTTTCCGTGACTCTCCATACGAGTGGTCAAACT CTTCGGCTCTTTCCGTGACTCTCCCTACGAGTGGTCAAACT < 41bp 0.807150293691038 0.392476448518535 0.97963184 0.204851 prediction 0.614300587382076 Functional Loss - KIR2DL3 ENSG00000243772 CDS Human protein_coding chr19:55255486 chr19:55255490 synonymous SNV . 0 25 hm5C_associated_SNPs_53559 0 0 0 0 1 KIR2DL3 chr19:55255536 5'GT 55255536 Upstream 47bp
chr7 26396717 26396717 1 + G T MESO 26396714 + 26396694 26396734 41 AGACAGCCTAAGCTGCCCTACAGGAGCTTAGCGTCTGCTAG AGACAGCCTAAGCTGCCCTACAGTAGCTTAGCGTCTGCTAG < 41bp 0.807134635285638 0.447571489996853 0.3870344 0.05262339 prediction 0.614269270571276 Functional Loss - SNX10 ENSG00000086300 CDS Human protein_coding chr7:26396714 chr7:26396717 nonsynonymous SNV 0.024 1 24 hm5C_associated_SNPs_53560 0 0 0 0 2 SNX10 chr7:26396627 3'AG 26396627 Downstream 91bp
chr7 26396717 26396717 1 + G T MESO 26396714 + 26396694 26396734 41 AGACAGCCTAAGCTGCCCTACAGGAGCTTAGCGTCTGCTAG AGACAGCCTAAGCTGCCCTACAGTAGCTTAGCGTCTGCTAG < 41bp 0.807134635285638 0.447571489996853 0.3870344 0.05262339 prediction 0.614269270571276 Functional Loss - SNX10 ENSG00000086300 CDS Human protein_coding chr7:26396714 chr7:26396717 nonsynonymous SNV 0.024 1 24 hm5C_associated_SNPs_53560 0 0 0 0 2 SNX10 chr7:26396747 5'GT 26396747 Upstream 31bp
chr5 5235246 5235246 1 + G T UCEC 5235244 + 5235224 5235264 41 GCTCAGTGTGCCGAGCACAACAGCAGACGATTCAGAGGGCG GCTCAGTGTGCCGAGCACAACATCAGACGATTCAGAGGGCG < 41bp 0.8379042218419 0.530796891742786 0.7737483 0.29246956 prediction 0.614214660198227 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5235244 chr5:5235246 nonsynonymous SNV 0.005 4 23 hm5C_associated_SNPs_53563 0 0 0 0 1 ADAMTS16 chr5:5235299 5'GT 5235299 Upstream 54bp
chr19 6919665 6919665 1 + G T LUSC 6919663 + 6919643 6919683 41 TGACCACCTCTGAGATCAAGCTGAAGATGAATTCTCGAGTC TGACCACCTCTGAGATCAAGCTTAAGATGAATTCTCGAGTC < 41bp 0.807105820852314 0.488196932624477 0.2200205 0.07705507 prediction 0.614211641704628 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6919663 chr19:6919665 synonymous SNV . 0 23 hm5C_associated_SNPs_53564 0 0 0 0 1 ADGRE1 chr19:6919758 5'GT 6919758 Upstream 94bp
chr5 140031363 140031363 1 + G T OV 140031361 + 140031341 140031381 41 CCCCAGGGCTGCACCTACCTCTGCACCACCTTCTAAGTCAC CCCCAGGGCTGCACCTACCTCTTCACCACCTTCTAAGTCAC < 41bp 0.817974326974056 0.510876523552321 0.027515203 0.026267946 prediction 0.614195606843468 Functional Loss - IK ENSG00000113141 CDS Human protein_coding chr5:140031361 chr5:140031363 nonsynonymous SNV 0.991 3 23 hm5C_associated_SNPs_53566 0 0 1 0 2 IK chr5:140031299 3'AG 140031299 Downstream 65bp
chr5 140031363 140031363 1 + G T OV 140031361 + 140031341 140031381 41 CCCCAGGGCTGCACCTACCTCTGCACCACCTTCTAAGTCAC CCCCAGGGCTGCACCTACCTCTTCACCACCTTCTAAGTCAC < 41bp 0.817974326974056 0.510876523552321 0.027515203 0.026267946 prediction 0.614195606843468 Functional Loss - IK ENSG00000113141 CDS Human protein_coding chr5:140031361 chr5:140031363 nonsynonymous SNV 0.991 3 23 hm5C_associated_SNPs_53566 0 0 1 0 2 IK chr5:140031391 5'GT 140031391 Upstream 29bp
chr13 113088832 113088832 1 + G T COAD 113088830 + 113088810 113088850 41 CATAAAGAGCAGCAGAGGACCAGCGCACAGAGGAGGAGCCA CATAAAGAGCAGCAGAGGACCATCGCACAGAGGAGGAGCCA < 41bp 0.814293341409806 0.507219708348603 0.15938962 0.15088323 prediction 0.614147266122405 Functional Loss - SPACA7 ENSG00000153498 CDS Human protein_coding chr13:113088830 chr13:113088832 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_53568 0 0 0 0 1 SPACA7 chr13:113088799 3'AG 113088799 Downstream 34bp
chr12 4835995 4835995 1 + G T BLCA 4835993 + 4835973 4836013 41 ATCCCCGACACGCGAGACTACAGGTGGGATGAACCAGGCTT ATCCCCGACACGCGAGACTACATGTGGGATGAACCAGGCTT < 41bp 0.807070750605339 0.470541457867597 0.5875581 0.3998708 prediction 0.614141501210677 Functional Loss - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4835993 chr12:4835995 nonsynonymous SNV 0.442 4 23 hm5C_associated_SNPs_53569 0 0 0 0 1 GALNT8 chr12:4835995 5'GT 4835995 Upstream 1bp
chr1 113266731 113266731 1 + G T UCEC 113266729 + 113266709 113266749 41 GACCTGTCGGGATGGAGCTGCAGCAGTGGACACAAAGTCAA GACCTGTCGGGATGGAGCTGCATCAGTGGACACAAAGTCAA < 41bp 0.819350971940763 0.512284298170047 0.23605803 0.18370652 prediction 0.614133347541432 Functional Loss - FAM19A3 ENSG00000184599 CDS Human protein_coding chr1:113266729 chr1:113266731 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_53570 0 0 0 1 2 FAM19A3 chr1:113266635 3'AG 113266635 Downstream 97bp
chr1 113266731 113266731 1 + G T UCEC 113266729 + 113266709 113266749 41 GACCTGTCGGGATGGAGCTGCAGCAGTGGACACAAAGTCAA GACCTGTCGGGATGGAGCTGCATCAGTGGACACAAAGTCAA < 41bp 0.819350971940763 0.512284298170047 0.23605803 0.18370652 prediction 0.614133347541432 Functional Loss - FAM19A3 ENSG00000184599 CDS Human protein_coding chr1:113266729 chr1:113266731 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_53570 0 0 0 1 2 FAM19A3 chr1:113266759 5'GT 113266759 Upstream 29bp
chr1 179054987 179054987 1 + A C BLCA 179054983 + 179054963 179055003 41 GACTGTGTCAGGATGTTCATCGCCACGTTCCACTTTCCTCA GACTGTGTCAGGATGTTCATCGCCCCGTTCCACTTTCCTCA < 41bp 0.807046819674868 0.399108622099392 0.15880111 0.10609293 prediction 0.614093639349736 Functional Loss - TOR3A ENSG00000186283 CDS Human protein_coding chr1:179054983 chr1:179054987 nonsynonymous SNV 0.513 0 25 hm5C_associated_SNPs_53572 0 0 1 0 1 TOR3A chr1:179055028 5'GT 179055028 Upstream 42bp
chr19 44652983 44652983 1 + G T LUAD 44652981 + 44652961 44653001 41 CTGAGGAGGAGCTGGGGCTGCTGGACCCTGTCCAGAGGAAT CTGAGGAGGAGCTGGGGCTGCTTGACCCTGTCCAGAGGAAT < 41bp 0.824459965316585 0.517418758482706 0.21813175 0.15841344 prediction 0.614082413667757 Functional Loss - ZNF234 ENSG00000263002 CDS Human protein_coding chr19:44652981 chr19:44652983 synonymous SNV . 0 23 hm5C_associated_SNPs_53573 0 0 1 0 2 ZNF234 chr19:44652924 3'AG 44652924 Downstream 60bp
chr19 44652983 44652983 1 + G T LUAD 44652981 + 44652961 44653001 41 CTGAGGAGGAGCTGGGGCTGCTGGACCCTGTCCAGAGGAAT CTGAGGAGGAGCTGGGGCTGCTTGACCCTGTCCAGAGGAAT < 41bp 0.824459965316585 0.517418758482706 0.21813175 0.15841344 prediction 0.614082413667757 Functional Loss - ZNF234 ENSG00000263002 CDS Human protein_coding chr19:44652981 chr19:44652983 synonymous SNV . 0 23 hm5C_associated_SNPs_53573 0 0 1 0 2 ZNF234 chr19:44653050 5'GT 44653050 Upstream 68bp
chr6 34789564 34789564 1 + G T SARC 34789561 + 34789541 34789581 41 GCCCACCTGGTTAGCCATCACTCGGGTCTACTGCAACAGGG GCCCACCTGGTTAGCCATCACTCTGGTCTACTGCAACAGGG < 41bp 0.807014170010746 0.44476614015785 0.22232315 0.2984854 prediction 0.614028340021493 Functional Loss - UHRF1BP1 ENSG00000065060 CDS Human protein_coding chr6:34789561 chr6:34789564 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_53574 0 0 1 0 1 UHRF1BP1 chr6:34789592 5'GT 34789592 Upstream 29bp
chr2 27528685 27528685 1 + G T PAAD 27528683 + 27528663 27528703 41 CACAAATGGCGCTGTATCTCCAGGTGGGCTCTAGGGGAGGG CACAAATGGCGCTGTATCTCCATGTGGGCTCTAGGGGAGGG < 41bp 0.828929095852931 0.521918184027066 0.93813497 0.89131296 prediction 0.61402182365173 Functional Loss - TRIM54 ENSG00000138100 CDS Human protein_coding chr2:27528683 chr2:27528685 nonsynonymous SNV 0.955 2 23 hm5C_associated_SNPs_53575 0 0 0 0 1 TRIM54 chr2:27528685 5'GT 27528685 Upstream 1bp
chr9 133346227 133346227 1 + G T THCA 133346224 + 133346204 133346244 41 CTGTCTCTTTCCTGCAGCAACACGGGATTCCCATCCCGGTC CTGTCTCTTTCCTGCAGCAACACTGGATTCCCATCCCGGTC < 41bp 0.806980385644868 0.416662989046378 0.48099864 0.18112987 prediction 0.613960771289736 Functional Loss - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133346224 chr9:133346227 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_53579 0 0 1 0 2 ASS1 chr9:133346221 3'AG 133346221 Downstream 7bp
chr9 133346227 133346227 1 + G T THCA 133346224 + 133346204 133346244 41 CTGTCTCTTTCCTGCAGCAACACGGGATTCCCATCCCGGTC CTGTCTCTTTCCTGCAGCAACACTGGATTCCCATCCCGGTC < 41bp 0.806980385644868 0.416662989046378 0.48099864 0.18112987 prediction 0.613960771289736 Functional Loss - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133346224 chr9:133346227 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_53579 0 0 1 0 2 ASS1 chr9:133346291 5'GT 133346291 Upstream 65bp
chr1 116943622 116943622 1 + G T STAD 116943620 + 116943600 116943640 41 ATGTGGAAGACAGCTACGGGCAGCAGTGGGTGAGTGGGCAC ATGTGGAAGACAGCTACGGGCATCAGTGGGTGAGTGGGCAC < 41bp 0.806974714744908 0.495667155999362 0.30754444 0.14371607 prediction 0.613949429489816 Functional Loss - ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116943620 chr1:116943622 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_53580 0 0 1 0 1 ATP1A1 chr1:116943628 5'GT 116943628 Upstream 7bp
chr19 16339708 16339708 1 + G T SARC 16339706 + 16339686 16339726 41 GTTAAGTGGGTCCCCGAGAACAGCGAGATCGTGTGGTCCAT GTTAAGTGGGTCCCCGAGAACATCGAGATCGTGTGGTCCAT < 41bp 0.806970388086177 0.48636774003012 0.44500813 0.13715467 prediction 0.613940776172355 Functional Loss - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16339706 chr19:16339708 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_53581 0 0 1 0 1 AP1M1 chr19:16339739 5'GT 16339739 Upstream 32bp
chr19 35551551 35551551 1 + G T HNSC 35551548 + 35551528 35551568 41 TAGGCGGAACCGGGTCCTGTCCCGATGGCGAGTGTTTGCCG TAGGCGGAACCGGGTCCTGTCCCTATGGCGAGTGTTTGCCG < 41bp 0.806970029272338 0.436317146906676 0.17796692 0.16672888 prediction 0.613940058544675 Functional Loss - HPN ENSG00000105707 CDS Human protein_coding chr19:35551548 chr19:35551551 nonsynonymous SNV 0.989 2 24 hm5C_associated_SNPs_53582 0 0 1 0 1 HPN chr19:35551531 3'AG 35551531 Downstream 21bp
chr13 108922545 108922545 1 + G T UCEC 108922543 + 108922523 108922563 41 GGAGCAGGAGCCCCCAAGGCCGGCCTGGAGGAAGCTCCAGC GGAGCAGGAGCCCCCAAGGCCGTCCTGGAGGAAGCTCCAGC < 41bp 0.815957370879974 0.50901216870921 0.37292385 0.3340286 prediction 0.613890404341527 Functional Loss - TNFSF13B ENSG00000102524 CDS Human protein_coding chr13:108922543 chr13:108922545 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_53585 0 0 0 0 1 TNFSF13B chr13:108922582 5'GT 108922582 Upstream 38bp
chr20 2845684 2845684 1 + A C STAD 2845680 + 2845660 2845700 41 GCCGATGCCTTCTACAAGGCCAAGAATGAGTTTGCAGCCAA GCCGATGCCTTCTACAAGGCCAAGCATGAGTTTGCAGCCAA < 41bp 0.806910052643488 0.41706378446176 0.190485 0.15003163 prediction 0.613820105286976 Functional Loss - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2845680 chr20:2845684 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_53588 0 0 0 0 1 VPS16 chr20:2845701 5'GT 2845701 Upstream 18bp
chr12 13214598 13214598 1 + G T UCEC 13214595 + 13214575 13214615 41 GTCTTCTCCCTGAGGAGGCTCGAGATATCACATGTTTGGAG GTCTTCTCCCTGAGGAGGCTCGATATATCACATGTTTGGAG < 41bp 0.806905436922135 0.427145513067786 0.76489484 0.13297287 prediction 0.61381087384427 Functional Loss - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13214595 chr12:13214598 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_53589 0 0 0 0 2 FAM234B chr12:13214509 3'AG 13214509 Downstream 90bp
chr12 13214598 13214598 1 + G T UCEC 13214595 + 13214575 13214615 41 GTCTTCTCCCTGAGGAGGCTCGAGATATCACATGTTTGGAG GTCTTCTCCCTGAGGAGGCTCGATATATCACATGTTTGGAG < 41bp 0.806905436922135 0.427145513067786 0.76489484 0.13297287 prediction 0.61381087384427 Functional Loss - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13214595 chr12:13214598 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_53589 0 0 0 0 2 FAM234B chr12:13214697 5'GT 13214697 Upstream 100bp
chr19 56669923 56669923 1 + G T LUSC 56669920 + 56669900 56669940 41 GGGTGCCTCAGGATGTGACGCAGGGCCCTGGGGCCACAGGT GGGTGCCTCAGGATGTGACGCAGTGCCCTGGGGCCACAGGT < 41bp 0.806887571578718 0.420084581028415 0.88620573 0.29183924 prediction 0.613775143157436 Functional Loss - ZNF444 ENSG00000167685 CDS Human protein_coding chr19:56669920 chr19:56669923 nonsynonymous SNV 0.022 3 24 hm5C_associated_SNPs_53590 0 0 1 0 2 ZNF444 chr19:56669863 3'AG 56669863 Downstream 61bp
chr19 56669923 56669923 1 + G T LUSC 56669920 + 56669900 56669940 41 GGGTGCCTCAGGATGTGACGCAGGGCCCTGGGGCCACAGGT GGGTGCCTCAGGATGTGACGCAGTGCCCTGGGGCCACAGGT < 41bp 0.806887571578718 0.420084581028415 0.88620573 0.29183924 prediction 0.613775143157436 Functional Loss - ZNF444 ENSG00000167685 CDS Human protein_coding chr19:56669920 chr19:56669923 nonsynonymous SNV 0.022 3 24 hm5C_associated_SNPs_53590 0 0 1 0 2 ZNF444 chr19:56669971 5'GT 56669971 Upstream 49bp
chr11 67051382 67051382 1 + A T HNSC 67051378 + 67051358 67051398 41 GTGAACGCGGCCGACGCCTTCGACATTGGCTCCTTCGATGA GTGAACGCGGCCGACGCCTTCGACTTTGGCTCCTTCGATGA < 41bp 0.819158419198245 0.512279408808881 0.3556357 0.38649902 prediction 0.613758020778729 Functional Loss - GRK2 ENSG00000173020 CDS Human protein_coding chr11:67051378 chr11:67051382 nonsynonymous SNV 0.984 4 25 hm5C_associated_SNPs_53591 0 0 1 0 2 GRK2 chr11:67051325 3'AG 67051325 Downstream 58bp
chr11 67051382 67051382 1 + A T HNSC 67051378 + 67051358 67051398 41 GTGAACGCGGCCGACGCCTTCGACATTGGCTCCTTCGATGA GTGAACGCGGCCGACGCCTTCGACTTTGGCTCCTTCGATGA < 41bp 0.819158419198245 0.512279408808881 0.3556357 0.38649902 prediction 0.613758020778729 Functional Loss - GRK2 ENSG00000173020 CDS Human protein_coding chr11:67051378 chr11:67051382 nonsynonymous SNV 0.984 4 25 hm5C_associated_SNPs_53591 0 0 1 0 2 GRK2 chr11:67051420 5'GT 67051420 Upstream 39bp
chr10 106125686 106125686 1 + G T UCEC 106125684 + 106125664 106125704 41 AGACATGGACAGCAGGCAGACAGAAATAAAAGCCCTGCAGC AGACATGGACAGCAGGCAGACATAAATAAAAGCCCTGCAGC < 41bp 0.841238040333487 0.534371782015285 0.67994523 0.16493344 prediction 0.613732516636405 Functional Loss - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106125684 chr10:106125686 stopgain 0.263 1 23 hm5C_associated_SNPs_53593 0 0 0 0 1 CFAP58 chr10:106125766 5'GT 106125766 Upstream 81bp
chr15 23811207 23811207 1 + G T UCEC 23811205 + 23811185 23811225 41 CCGTTGCCAAGCCGAAGCAGCGGCATTTGGACAAAGCAGAT CCGTTGCCAAGCCGAAGCAGCGTCATTTGGACAAAGCAGAT < 41bp 0.822735737094749 0.515869974254317 0.069378436 0.046830237 prediction 0.613731525680865 Functional Loss - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23811205 chr15:23811207 nonsynonymous SNV 0.100 4 23 hm5C_associated_SNPs_53594 0 0 1 0 1 MKRN3 chr15:23811234 5'GT 23811234 Upstream 28bp
chr2 231090581 231090581 1 + G T LUAD 231090578 + 231090558 231090598 41 TCATGGCCCAGCAGGGCCAGCAGGGGCAGATGGCAAGTGGA TCATGGCCCAGCAGGGCCAGCAGTGGCAGATGGCAAGTGGA < 41bp 0.80684581969009 0.443939853552495 0.8953178 0.29957512 prediction 0.613691639380181 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231090578 chr2:231090581 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_53595 0 0 0 0 1 SP140 chr2:231090618 5'GT 231090618 Upstream 38bp
chr1 40735679 40735679 1 + G T READ 40735676 + 40735656 40735696 41 TTCTTCATGAAAGATGCAATCAAGAAATTTGTTGTGACTCA TTCTTCATGAAAGATGCAATCAATAAATTTGTTGTGACTCA < 41bp 0.855295658094151 0.548454610935944 0.70318776 0.21071935 prediction 0.613682094316413 Functional Loss - ZMPSTE24 ENSG00000084073 CDS Human protein_coding chr1:40735676 chr1:40735679 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_53596 0 0 1 0 1 ZMPSTE24 chr1:40735647 3'AG 40735647 Downstream 33bp
chr13 30054429 30054429 1 + G T SKCM 30054426 + 30054406 30054446 41 GAGCGGCTGCAGCTGCAATTCGAGGCGGAAATGGCGCGCCT GAGCGGCTGCAGCTGCAATTCGATGCGGAAATGGCGCGCCT < 41bp 0.872212582710728 0.565377739068374 0.9265338 0.53888637 prediction 0.613669687284709 Functional Loss - MTUS2 ENSG00000132938 CDS Human protein_coding chr13:30054426 chr13:30054429 nonsynonymous SNV 0.713 0 24 hm5C_associated_SNPs_53597 0 0 0 0 1 MTUS2 chr13:30054501 5'GT 30054501 Upstream 73bp
chr2 71188132 71188132 1 + A T KIRP 71188128 + 71188108 71188148 41 GATTACCATGACGACAACTTCGCCATCGTCTTTGCAGCCAT GATTACCATGACGACAACTTCGCCTTCGTCTTTGCAGCCAT < 41bp 0.839278202230763 0.532445919665587 0.30029976 0.06749076 prediction 0.613664565130352 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71188128 chr2:71188132 nonsynonymous SNV 0.919 5 25 hm5C_associated_SNPs_53598 0 0 0 0 2 ATP6V1B1 chr2:71188051 3'AG 71188051 Downstream 82bp
chr2 71188132 71188132 1 + A T KIRP 71188128 + 71188108 71188148 41 GATTACCATGACGACAACTTCGCCATCGTCTTTGCAGCCAT GATTACCATGACGACAACTTCGCCTTCGTCTTTGCAGCCAT < 41bp 0.839278202230763 0.532445919665587 0.30029976 0.06749076 prediction 0.613664565130352 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71188128 chr2:71188132 nonsynonymous SNV 0.919 5 25 hm5C_associated_SNPs_53598 0 0 0 0 2 ATP6V1B1 chr2:71188152 5'GT 71188152 Upstream 21bp
chr19 58551855 58551855 1 + G T LUAD 58551852 + 58551832 58551872 41 GACTCGGTCGAACCCCAGGACTGGAGTTTCGGTGAGGAGGA GACTCGGTCGAACCCCAGGACTGTAGTTTCGGTGAGGAGGA < 41bp 0.806827467347207 0.428160230719457 0.25465432 0.14952919 prediction 0.613654934694415 Functional Loss - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58551852 chr19:58551855 nonsynonymous SNV 0.916 0 24 hm5C_associated_SNPs_53602 0 0 0 0 2 ZSCAN1 chr19:58551818 3'AG 58551818 Downstream 38bp
chr19 58551855 58551855 1 + G T LUAD 58551852 + 58551832 58551872 41 GACTCGGTCGAACCCCAGGACTGGAGTTTCGGTGAGGAGGA GACTCGGTCGAACCCCAGGACTGTAGTTTCGGTGAGGAGGA < 41bp 0.806827467347207 0.428160230719457 0.25465432 0.14952919 prediction 0.613654934694415 Functional Loss - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58551852 chr19:58551855 nonsynonymous SNV 0.916 0 24 hm5C_associated_SNPs_53602 0 0 0 0 2 ZSCAN1 chr19:58551912 5'GT 58551912 Upstream 58bp
chr2 88482275 88482275 1 + G T GBM 88482273 + 88482253 88482293 41 CGTCTGGTCGTGGCAGTGAACCGCAATGACATCATCCACAG CGTCTGGTCGTGGCAGTGAACCTCAATGACATCATCCACAG < 41bp 0.834141136468969 0.527361887561228 0.09223452 0.119247675 prediction 0.613558497815481 Functional Loss - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88482273 chr2:88482275 nonsynonymous SNV 0.962 1 23 hm5C_associated_SNPs_53606 0 0 0 2 2 THNSL2 chr2:88482218 3'AG 88482218 Downstream 58bp
chr2 88482275 88482275 1 + G T GBM 88482273 + 88482253 88482293 41 CGTCTGGTCGTGGCAGTGAACCGCAATGACATCATCCACAG CGTCTGGTCGTGGCAGTGAACCTCAATGACATCATCCACAG < 41bp 0.834141136468969 0.527361887561228 0.09223452 0.119247675 prediction 0.613558497815481 Functional Loss - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88482273 chr2:88482275 nonsynonymous SNV 0.962 1 23 hm5C_associated_SNPs_53606 0 0 0 2 2 THNSL2 chr2:88482366 5'GT 88482366 Upstream 92bp
chr14 74416676 74416676 1 - C A UCEC 74416678 - 74416658 74416698 41 GAGGCGCGGAGGGGAGCCGTCAGGTGAGGAGAGAAAAGAGA GAGGCGCGGAGGGGAGCCGTCATGTGAGGAGAGAAAAGAGA < 41bp 0.806774215757675 0.475642990996117 0.90311885 0.83846706 prediction 0.613548431515349 Functional Loss - FAM161B ENSG00000156050 CDS Human protein_coding chr14:74416678 chr14:74416676 nonsynonymous SNV 0.641 2 23 hm5C_associated_SNPs_53607 0 0 0 0 1 FAM161B chr14:74416676 5'GT 74416676 Upstream 1bp
chr17 20239313 20239313 1 + G T BLCA 20239310 + 20239290 20239330 41 AGAACGAGAAAAGATGGACACTGGGGTTGTACTTCTCTCAG AGAACGAGAAAAGATGGACACTGTGGTTGTACTTCTCTCAG < 41bp 0.827520465113825 0.520750391286826 0.69575346 0.18585533 prediction 0.613540147653997 Functional Loss - CCDC144CP ENSG00000154898 ncRNA_exonic Human transcribed_processed_pseudogene chr17:20239310 chr17:20239313 . . 0 24 hm5C_associated_SNPs_53608 0 0 0 2 1 CCDC144CP chr17:20239393 5'GT 20239393 Upstream 81bp
chr10 121212231 121212231 1 + A T LUAD 121212227 + 121212207 121212247 41 GTGCTGGACATCGAGCAGTTCTCCACTGTGAAGGGCGTCAA GTGCTGGACATCGAGCAGTTCTCCTCTGTGAAGGGCGTCAA < 41bp 0.806758928100275 0.46202221717879 0.78696036 0.03267494 prediction 0.613517856200549 Functional Loss - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121212227 chr10:121212231 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_53609 0 0 0 0 2 GRK5 chr10:121212183 3'AG 121212183 Downstream 49bp
chr10 121212231 121212231 1 + A T LUAD 121212227 + 121212207 121212247 41 GTGCTGGACATCGAGCAGTTCTCCACTGTGAAGGGCGTCAA GTGCTGGACATCGAGCAGTTCTCCTCTGTGAAGGGCGTCAA < 41bp 0.806758928100275 0.46202221717879 0.78696036 0.03267494 prediction 0.613517856200549 Functional Loss - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121212227 chr10:121212231 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_53609 0 0 0 0 2 GRK5 chr10:121212320 5'GT 121212320 Upstream 90bp
chr5 52778754 52778754 1 + G T BLCA 52778751 + 52778731 52778771 41 AAGCGAAGAACGGCCGCTGCCAGGTCCTGTACAAGACCGAA AAGCGAAGAACGGCCGCTGCCAGTTCCTGTACAAGACCGAA < 41bp 0.806755886245239 0.455889428540066 0.43216136 0.080228984 prediction 0.613511772490478 Functional Loss - FST ENSG00000134363 CDS Human protein_coding chr5:52778751 chr5:52778754 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_53610 0 0 1 0 1 FST chr5:52778710 3'AG 52778710 Downstream 45bp
chr12 1740547 1740547 1 + G T LUSC 1740544 + 1740524 1740564 41 CCCAGCCTGCTGCTGCTGTTCACGGCTGCTCTGCTGTCCAG CCCAGCCTGCTGCTGCTGTTCACTGCTGCTCTGCTGTCCAG < 41bp 0.879481744759178 0.572748626515149 0.68611276 0.16115353 prediction 0.613466236488059 Functional Loss - WNT5B ENSG00000111186 CDS Human protein_coding chr12:1740544 chr12:1740547 synonymous SNV . 0 24 hm5C_associated_SNPs_53613 0 0 0 0 2 WNT5B chr12:1740464 3'AG 1740464 Downstream 84bp
chr12 1740547 1740547 1 + G T LUSC 1740544 + 1740524 1740564 41 CCCAGCCTGCTGCTGCTGTTCACGGCTGCTCTGCTGTCCAG CCCAGCCTGCTGCTGCTGTTCACTGCTGCTCTGCTGTCCAG < 41bp 0.879481744759178 0.572748626515149 0.68611276 0.16115353 prediction 0.613466236488059 Functional Loss - WNT5B ENSG00000111186 CDS Human protein_coding chr12:1740544 chr12:1740547 synonymous SNV . 0 24 hm5C_associated_SNPs_53613 0 0 0 0 2 WNT5B chr12:1740600 5'GT 1740600 Upstream 54bp
chr10 124271510 124271510 1 + G T LUAD 124271508 + 124271488 124271528 41 AAGCCAAAGAGCTGAAGGACCGGCACCGGGACTTCCCAGAC AAGCCAAAGAGCTGAAGGACCGTCACCGGGACTTCCCAGAC < 41bp 0.80672581217464 0.484191364355003 0.39534825 0.25859588 prediction 0.61345162434928 Functional Loss - HTRA1 ENSG00000166033 CDS Human protein_coding chr10:124271508 chr10:124271510 synonymous SNV . 0 23 hm5C_associated_SNPs_53614 0 0 0 0 1 HTRA1 chr10:124271486 3'AG 124271486 Downstream 25bp
chr16 31121591 31121591 1 + G T UCEC 31121588 + 31121568 31121608 41 CGACAGCTGCTGGATGACCACAAGGATGTGGTGACCCTCTT CGACAGCTGCTGGATGACCACAATGATGTGGTGACCCTCTT < 41bp 0.806703445730924 0.430973442629407 0.5875236 0.2212413 prediction 0.613406891461849 Functional Loss - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31121588 chr16:31121591 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_53618 0 0 1 2 2 BCKDK chr16:31121526 3'AG 31121526 Downstream 66bp
chr16 31121591 31121591 1 + G T UCEC 31121588 + 31121568 31121608 41 CGACAGCTGCTGGATGACCACAAGGATGTGGTGACCCTCTT CGACAGCTGCTGGATGACCACAATGATGTGGTGACCCTCTT < 41bp 0.806703445730924 0.430973442629407 0.5875236 0.2212413 prediction 0.613406891461849 Functional Loss - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31121588 chr16:31121591 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_53618 0 0 1 2 2 BCKDK chr16:31121645 5'GT 31121645 Upstream 55bp
chr19 3765207 3765207 1 + G T UCEC 3765204 + 3765184 3765224 41 GGAAAAGGTGCAGTGACCAGCGAGGCCCTCAAGGACCCCGA GGAAAAGGTGCAGTGACCAGCGATGCCCTCAAGGACCCCGA < 41bp 0.888913227428859 0.582225263105833 0.9038716 0.32217258 prediction 0.613375928646053 Functional Loss - MRPL54 ENSG00000183617 CDS Human protein_coding chr19:3765204 chr19:3765207 nonsynonymous SNV 0.074 0 24 hm5C_associated_SNPs_53621 0 0 1 0 1 MRPL54 chr19:3765164 3'AG 3765164 Downstream 44bp
chr11 117109397 117109397 1 + G T UCEC 117109395 + 117109375 117109415 41 ACAATAACCAAGGAGAATAACAGAAATGTCCATTTGGAGCA ACAATAACCAAGGAGAATAACATAAATGTCCATTTGGAGCA < 41bp 0.807292326219261 0.500622687991287 0.40512574 0.07047784 prediction 0.613339276455948 Functional Loss - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117109395 chr11:117109397 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_53623 0 0 1 0 2 RNF214 chr11:117109317 3'AG 117109317 Downstream 81bp
chr11 117109397 117109397 1 + G T UCEC 117109395 + 117109375 117109415 41 ACAATAACCAAGGAGAATAACAGAAATGTCCATTTGGAGCA ACAATAACCAAGGAGAATAACATAAATGTCCATTTGGAGCA < 41bp 0.807292326219261 0.500622687991287 0.40512574 0.07047784 prediction 0.613339276455948 Functional Loss - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117109395 chr11:117109397 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_53623 0 0 1 0 2 RNF214 chr11:117109362 3'AG 117109362 Downstream 36bp
chr6 74072990 74072990 1 + G T ACC 74072988 + 74072968 74073008 41 CTGACTATCACCGCCAGCTCCAGGCGAAAGGTACGGGGCTG CTGACTATCACCGCCAGCTCCATGCGAAAGGTACGGGGCTG < 41bp 0.806669574220237 0.476684198957816 0.82753474 0.16615435 prediction 0.613339148440474 Functional Loss - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74072988 chr6:74072990 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_53624 0 0 0 0 1 KHDC3L chr6:74072997 5'GT 74072997 Upstream 8bp
chr14 73421133 73421133 1 + G T LUAD 73421130 + 73421110 73421150 41 CCTGTTGACCAACGTGGTGACGGGACACCGGCAGTCCTTTG CCTGTTGACCAACGTGGTGACGGTACACCGGCAGTCCTTTG < 41bp 0.872295989824417 0.565641606487946 0.8962826 0.7395112 prediction 0.613308766672941 Functional Loss - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73421130 chr14:73421133 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_53625 0 0 1 0 2 DCAF4 chr14:73421094 3'AG 73421094 Downstream 40bp
chr14 73421133 73421133 1 + G T LUAD 73421130 + 73421110 73421150 41 CCTGTTGACCAACGTGGTGACGGGACACCGGCAGTCCTTTG CCTGTTGACCAACGTGGTGACGGTACACCGGCAGTCCTTTG < 41bp 0.872295989824417 0.565641606487946 0.8962826 0.7395112 prediction 0.613308766672941 Functional Loss - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73421130 chr14:73421133 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_53625 0 0 1 0 2 DCAF4 chr14:73421191 5'GT 73421191 Upstream 59bp
chr16 1291480 1291480 1 + G T UCEC 1291478 + 1291458 1291498 41 TCAGGGTGCAACTGCGGGAGCAGCACCTCTACTACCAGGAC TCAGGGTGCAACTGCGGGAGCATCACCTCTACTACCAGGAC < 41bp 0.80665004894547 0.483557546871928 0.26442575 0.21725315 prediction 0.613300097890941 Functional Loss - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291478 chr16:1291480 nonsynonymous SNV 0.018 2 23 hm5C_associated_SNPs_53627 0 0 0 0 2 TPSAB1 chr16:1291435 3'AG 1291435 Downstream 46bp
chr16 1291480 1291480 1 + G T UCEC 1291478 + 1291458 1291498 41 TCAGGGTGCAACTGCGGGAGCAGCACCTCTACTACCAGGAC TCAGGGTGCAACTGCGGGAGCATCACCTCTACTACCAGGAC < 41bp 0.80665004894547 0.483557546871928 0.26442575 0.21725315 prediction 0.613300097890941 Functional Loss - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291478 chr16:1291480 nonsynonymous SNV 0.018 2 23 hm5C_associated_SNPs_53627 0 0 0 0 2 TPSAB1 chr16:1291462 3'AG 1291462 Downstream 19bp
chr19 50384664 50384664 1 + A C LUSC 50384660 + 50384640 50384680 41 CCAGGCTGGAGGTTCCCTGCCCGCACTGCACTTCCACCGCG CCAGGCTGGAGGTTCCCTGCCCGCCCTGCACTTCCACCGCG < 41bp 0.806648985820598 0.409265299479508 0.13375741 0.11669645 prediction 0.613297971641195 Functional Loss - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50384660 chr19:50384664 synonymous SNV . 0 25 hm5C_associated_SNPs_53628 0 0 0 0 1 TBC1D17 chr19:50384732 5'GT 50384732 Upstream 69bp
chr19 7587652 7587652 1 + G T rs61736595 7587650 + 7587630 7587670 41 CCCCAGCATGACAGCCCCGGCGGGTCCGCGCGGCTCAGGTG CCCCAGCATGACAGCCCCGGCGTGTCCGCGCGGCTCAGGTG < 41bp 0.810184323245426 0.503557095878233 0.7845521 0.42642415 prediction 0.613254454734387 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7587650 chr19:7587652 nonsynonymous SNV 0.451 4 23 hm5C_associated_SNPs_53630 1 0 1 0 1 MCOLN1 chr19:7587667 5'GT 7587667 Upstream 16bp
chr15 69672266 69672266 1 + G T UCEC 69672264 + 69672244 69672284 41 TGTTCGGCTACCGCCATCCACAGAGTTCTGCCACTGCCTGC TGTTCGGCTACCGCCATCCACATAGTTCTGCCACTGCCTGC < 41bp 0.806601654896071 0.463667816592835 0.90951025 0.24438515 prediction 0.613203309792141 Functional Loss - PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69672264 chr15:69672266 nonsynonymous SNV 0.991 2 23 hm5C_associated_SNPs_53634 0 0 0 0 2 PAQR5 chr15:69672222 3'AG 69672222 Downstream 45bp
chr15 69672266 69672266 1 + G T UCEC 69672264 + 69672244 69672284 41 TGTTCGGCTACCGCCATCCACAGAGTTCTGCCACTGCCTGC TGTTCGGCTACCGCCATCCACATAGTTCTGCCACTGCCTGC < 41bp 0.806601654896071 0.463667816592835 0.90951025 0.24438515 prediction 0.613203309792141 Functional Loss - PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69672264 chr15:69672266 nonsynonymous SNV 0.991 2 23 hm5C_associated_SNPs_53634 0 0 0 0 2 PAQR5 chr15:69672349 5'GT 69672349 Upstream 84bp
chr1 43779453 43779453 1 + G T DLBC 43779451 + 43779431 43779471 41 CCCTCTCACTGTGTCCAGGGCTGCAGGCTGAGGGCCCAGTC CCCTCTCACTGTGTCCAGGGCTTCAGGCTGAGGGCCCAGTC < 41bp 0.807050669599228 0.500465002840425 0.2711863 0.23837659 prediction 0.613171333517606 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43779451 chr1:43779453 synonymous SNV . 0 23 hm5C_associated_SNPs_53638 0 0 0 0 1 TIE1 chr1:43779449 3'AG 43779449 Downstream 5bp
chr1 171077354 171077354 1 + G T UCEC 171077352 + 171077332 171077372 41 TGCCACAGAACTCAGCCGCACAGCAGAACAGGTACTACTCC TGCCACAGAACTCAGCCGCACATCAGAACAGGTACTACTCC < 41bp 0.823160569147447 0.516574927264509 0.9238683 0.88868546 prediction 0.613171283765877 Functional Loss - FMO3 ENSG00000007933 CDS Human protein_coding chr1:171077352 chr1:171077354 nonsynonymous SNV 0.212 4 23 hm5C_associated_SNPs_53639 0 0 0 0 1 FMO3 chr1:171077362 5'GT 171077362 Upstream 9bp
chr11 60971063 60971063 1 + G T UCEC 60971061 + 60971041 60971081 41 AGTGGCTGCTGCTGCTGGGTCTGGTGGCACTCTCTGAGTGC AGTGGCTGCTGCTGCTGGGTCTTGTGGCACTCTCTGAGTGC < 41bp 0.831095627047616 0.524518043499953 0.18109429 0.08040953 prediction 0.613155167095326 Functional Loss - PGA3 ENSG00000229859 CDS Human protein_coding chr11:60971061 chr11:60971063 synonymous SNV . 0 23 hm5C_associated_SNPs_53640 0 0 0 0 1 PGA3 chr11:60971092 5'GT 60971092 Upstream 30bp
chr19 10132068 10132068 1 + G T STAD 10132066 + 10132046 10132086 41 GACCTCTATCTCCCAGCCTCCAGGAAGCTGTTTTGCTCCGT GACCTCTATCTCCCAGCCTCCATGAAGCTGTTTTGCTCCGT < 41bp 0.836161326372887 0.529585952524044 0.32983047 0.05386889 prediction 0.613150747697687 Functional Loss - RDH8 ENSG00000080511 CDS Human protein_coding chr19:10132066 chr19:10132068 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_53641 0 0 0 0 1 RDH8 chr19:10132114 5'GT 10132114 Upstream 47bp
chrX 55116965 55116965 1 + G T LUAD 55116962 + 55116942 55116982 41 AGCCCACTGAGGAAAAACGTCAAGAAGAGGAACCACCAACT AGCCCACTGAGGAAAAACGTCAATAAGAGGAACCACCAACT < 41bp 0.873782469922966 0.567210136061899 0.2673805 0.30222237 prediction 0.613144667722133 Functional Loss - PAGE2 ENSG00000234068 CDS Human protein_coding chrX:55116962 chrX:55116965 stopgain 0.146 0 24 hm5C_associated_SNPs_53642 0 0 0 0 2 PAGE2 chrX:55116935 3'AG 55116935 Downstream 31bp
chrX 55116965 55116965 1 + G T LUAD 55116962 + 55116942 55116982 41 AGCCCACTGAGGAAAAACGTCAAGAAGAGGAACCACCAACT AGCCCACTGAGGAAAAACGTCAATAAGAGGAACCACCAACT < 41bp 0.873782469922966 0.567210136061899 0.2673805 0.30222237 prediction 0.613144667722133 Functional Loss - PAGE2 ENSG00000234068 CDS Human protein_coding chrX:55116962 chrX:55116965 stopgain 0.146 0 24 hm5C_associated_SNPs_53642 0 0 0 0 2 PAGE2 chrX:55117043 5'GT 55117043 Upstream 79bp
chr17 62080238 62080238 1 - C A GBM 62080240 - 62080220 62080260 41 CATCATAGTCACGGTGGTGTCGGTGTTGCTGTCCCTGTTCG CATCATAGTCACGGTGGTGTCGTTGTTGCTGTCCCTGTTCG < 41bp 0.829015167567112 0.522485448339914 0.39618987 0.17935055 prediction 0.613059438454396 Functional Loss - ICAM2 ENSG00000108622 CDS Human protein_coding chr17:62080240 chr17:62080238 nonsynonymous SNV 0.029 0 23 hm5C_associated_SNPs_53645 0 0 1 0 1 ICAM2 chr17:62080285 3'AG 62080285 Downstream 48bp
chr10 88780135 88780135 1 + G T UCEC 88780132 + 88780112 88780152 41 GAAGGCCTGGCCCACCGCACCGAGAAGGCCACCGAGGGAGC GAAGGCCTGGCCCACCGCACCGATAAGGCCACCGAGGGAGC < 41bp 0.873616982004931 0.567114859442959 0.81460965 0.22925723 prediction 0.613004245123945 Functional Loss - FAM25A ENSG00000188100 CDS Human protein_coding chr10:88780132 chr10:88780135 nonsynonymous SNV 0.805 1 24 hm5C_associated_SNPs_53647 0 0 0 0 1 FAM25A chr10:88780154 5'GT 88780154 Upstream 20bp
chr4 2044096 2044096 1 + G T rs560858476 2044093 + 2044073 2044113 41 CTGGCCATGGCCCCCCCGCCCGCGTGCCGGTCCCCGATGTC CTGGCCATGGCCCCCCCGCCCGCTTGCCGGTCCCCGATGTC < 41bp 0.806487168599541 0.449620921779749 0.40253946 0.14537653 prediction 0.612974337199083 Functional Loss - C4orf48 ENSG00000243449 CDS Human protein_coding chr4:2044093 chr4:2044096 synonymous SNV . 0 24 hm5C_associated_SNPs_53649 0 0 1 0 1 C4orf48 chr4:2044054 3'AG 2044054 Downstream 43bp
chr3 44694153 44694153 1 + G T TGCT 44694150 + 44694130 44694170 41 TCATTACCAGGGACTCTGGCCAAGAGTGAGATACTGGAGAC TCATTACCAGGGACTCTGGCCAATAGTGAGATACTGGAGAC < 41bp 0.870519881861812 0.564033727208104 0.6056317 0.36444116 prediction 0.612972309307416 Functional Loss - ZNF35 ENSG00000169981 CDS Human protein_coding chr3:44694150 chr3:44694153 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_53650 0 0 1 0 1 ZNF35 chr3:44694193 5'GT 44694193 Upstream 41bp
chr19 8464858 8464858 1 + G T HNSC 8464856 + 8464836 8464876 41 ATCGGCGTGGAGTTCGCCACCCGCAGCATCCAGGTGGACGG ATCGGCGTGGAGTTCGCCACCCTCAGCATCCAGGTGGACGG < 41bp 0.8298310764452 0.523361961949813 0.076818705 0.03151241 prediction 0.612938228990773 Functional Loss - RAB11B ENSG00000185236 CDS Human protein_coding chr19:8464856 chr19:8464858 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_53654 0 0 0 0 1 RAB11B chr19:8464942 5'GT 8464942 Upstream 85bp
chr8 7806693 7806693 1 + G T HNSC 7806690 + 7806670 7806710 41 ATGTAGCTATTGACTTCACCCAGGAAGAGTGGGACATGATG ATGTAGCTATTGACTTCACCCAGTAAGAGTGGGACATGATG < 41bp 0.806458274314564 0.449035040901492 0.23683926 0.060729533 prediction 0.612916548629129 Functional Loss - ZNF705B ENSG00000215356 CDS Human protein_coding chr8:7806690 chr8:7806693 stopgain 0.620 0 24 hm5C_associated_SNPs_53655 0 0 0 0 2 ZNF705B chr8:7806651 3'AG 7806651 Downstream 43bp
chr8 7806693 7806693 1 + G T HNSC 7806690 + 7806670 7806710 41 ATGTAGCTATTGACTTCACCCAGGAAGAGTGGGACATGATG ATGTAGCTATTGACTTCACCCAGTAAGAGTGGGACATGATG < 41bp 0.806458274314564 0.449035040901492 0.23683926 0.060729533 prediction 0.612916548629129 Functional Loss - ZNF705B ENSG00000215356 CDS Human protein_coding chr8:7806690 chr8:7806693 stopgain 0.620 0 24 hm5C_associated_SNPs_53655 0 0 0 0 2 ZNF705B chr8:7806777 5'GT 7806777 Upstream 85bp
chr19 46181247 46181247 1 + G T BRCA 46181245 + 46181225 46181265 41 AAATGCGCTGCCGGGATTACCGGCTGAGGTGAGGGCATGCG AAATGCGCTGCCGGGATTACCGTCTGAGGTGAGGGCATGCG < 41bp 0.806453103354072 0.486115319405211 0.8906213 0.41267854 prediction 0.612906206708144 Functional Loss - GIPR ENSG00000010310 CDS Human protein_coding chr19:46181245 chr19:46181247 synonymous SNV . 0 23 hm5C_associated_SNPs_53656 0 0 1 0 2 GIPR chr19:46181164 3'AG 46181164 Downstream 84bp
chr19 46181247 46181247 1 + G T BRCA 46181245 + 46181225 46181265 41 AAATGCGCTGCCGGGATTACCGGCTGAGGTGAGGGCATGCG AAATGCGCTGCCGGGATTACCGTCTGAGGTGAGGGCATGCG < 41bp 0.806453103354072 0.486115319405211 0.8906213 0.41267854 prediction 0.612906206708144 Functional Loss - GIPR ENSG00000010310 CDS Human protein_coding chr19:46181245 chr19:46181247 synonymous SNV . 0 23 hm5C_associated_SNPs_53656 0 0 1 0 2 GIPR chr19:46181252 5'GT 46181252 Upstream 6bp
chr6 153073323 153073323 1 + G T UCEC 153073321 + 153073301 153073341 41 AGAGGCACAGAAATGGACACCAGAAATAAGGCCCAGCTCCT AGAGGCACAGAAATGGACACCATAAATAAGGCCCAGCTCCT < 41bp 0.811869314738224 0.505429763219473 0.4352971 0.059533626 prediction 0.612879103037502 Functional Loss - VIP ENSG00000146469 CDS Human protein_coding chr6:153073321 chr6:153073323 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_53657 0 0 0 0 2 VIP chr6:153073303 3'AG 153073303 Downstream 21bp
chr6 153073323 153073323 1 + G T UCEC 153073321 + 153073301 153073341 41 AGAGGCACAGAAATGGACACCAGAAATAAGGCCCAGCTCCT AGAGGCACAGAAATGGACACCATAAATAAGGCCCAGCTCCT < 41bp 0.811869314738224 0.505429763219473 0.4352971 0.059533626 prediction 0.612879103037502 Functional Loss - VIP ENSG00000146469 CDS Human protein_coding chr6:153073321 chr6:153073323 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_53657 0 0 0 0 2 VIP chr6:153073419 5'GT 153073419 Upstream 97bp
chr9 71006587 71006587 1 + G T LUAD 71006584 + 71006564 71006604 41 TGACATATGCAACGACTCTTCTGGAAGCAATGAAAGGAGGA TGACATATGCAACGACTCTTCTGTAAGCAATGAAAGGAGGA < 41bp 0.806434260159428 0.445681626296618 0.27701876 0.07839629 prediction 0.612868520318855 Functional Loss - PGM5 ENSG00000154330 CDS Human protein_coding chr9:71006584 chr9:71006587 stopgain 0.999 1 24 hm5C_associated_SNPs_53659 0 0 0 0 1 PGM5 chr9:71006640 5'GT 71006640 Upstream 54bp
chr11 1955226 1955226 1 + G T GBM 1955223 + 1955203 1955243 41 GCAGAGAAGGAGAGGGAGCGCCAGAACAGACTGGCGGTGAG GCAGAGAAGGAGAGGGAGCGCCATAACAGACTGGCGGTGAG < 41bp 0.806410701792017 0.450076961191914 0.3679133 0.2297062 prediction 0.612821403584035 Functional Loss - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1955223 chr11:1955226 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_53662 0 0 0 0 2 TNNT3 chr11:1955161 3'AG 1955161 Downstream 66bp
chr11 1955226 1955226 1 + G T GBM 1955223 + 1955203 1955243 41 GCAGAGAAGGAGAGGGAGCGCCAGAACAGACTGGCGGTGAG GCAGAGAAGGAGAGGGAGCGCCATAACAGACTGGCGGTGAG < 41bp 0.806410701792017 0.450076961191914 0.3679133 0.2297062 prediction 0.612821403584035 Functional Loss - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1955223 chr11:1955226 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_53662 0 0 0 0 2 TNNT3 chr11:1955238 5'GT 1955238 Upstream 13bp
chr20 30667655 30667655 1 + G T LUSC 30667652 + 30667632 30667672 41 GGCAACATGCTGGGCTCCTTCATGATCCGGGATAGCGAGAC GGCAACATGCTGGGCTCCTTCATTATCCGGGATAGCGAGAC < 41bp 0.881701247524864 0.575294336126617 0.08026099 0.020835698 prediction 0.612813822796493 Functional Loss - HCK ENSG00000101336 CDS Human protein_coding chr20:30667652 chr20:30667655 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53663 0 0 0 0 2 HCK chr20:30667577 3'AG 30667577 Downstream 79bp
chr20 30667655 30667655 1 + G T LUSC 30667652 + 30667632 30667672 41 GGCAACATGCTGGGCTCCTTCATGATCCGGGATAGCGAGAC GGCAACATGCTGGGCTCCTTCATTATCCGGGATAGCGAGAC < 41bp 0.881701247524864 0.575294336126617 0.08026099 0.020835698 prediction 0.612813822796493 Functional Loss - HCK ENSG00000101336 CDS Human protein_coding chr20:30667652 chr20:30667655 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53663 0 0 0 0 2 HCK chr20:30667680 5'GT 30667680 Upstream 26bp
chr3 179426658 179426658 1 + G T UCEC 179426656 + 179426636 179426676 41 AAAGTGGTTCTTTGACAGCTCTGGGGGCAACGGGCATGCGC AAAGTGGTTCTTTGACAGCTCTTGGGGCAACGGGCATGCGC < 41bp 0.822209068524492 0.515804903942754 0.8797033 0.7206779 prediction 0.612808329163476 Functional Loss - USP13 ENSG00000058056 CDS Human protein_coding chr3:179426656 chr3:179426658 nonsynonymous SNV 0.969 4 23 hm5C_associated_SNPs_53664 0 0 1 0 2 USP13 chr3:179426561 3'AG 179426561 Downstream 98bp
chr3 179426658 179426658 1 + G T UCEC 179426656 + 179426636 179426676 41 AAAGTGGTTCTTTGACAGCTCTGGGGGCAACGGGCATGCGC AAAGTGGTTCTTTGACAGCTCTTGGGGCAACGGGCATGCGC < 41bp 0.822209068524492 0.515804903942754 0.8797033 0.7206779 prediction 0.612808329163476 Functional Loss - USP13 ENSG00000058056 CDS Human protein_coding chr3:179426656 chr3:179426658 nonsynonymous SNV 0.969 4 23 hm5C_associated_SNPs_53664 0 0 1 0 2 USP13 chr3:179426745 5'GT 179426745 Upstream 88bp
chr16 57775655 57775655 1 + G T LUAD 57775653 + 57775633 57775673 41 ACTGGTGCTGGGCAAAGCCTCCGGGCGGCTGCTGGCTACAG ACTGGTGCTGGGCAAAGCCTCCTGGCGGCTGCTGGCTACAG < 41bp 0.806396572929418 0.474681643926884 0.91147846 0.41957104 prediction 0.612793145858835 Functional Loss - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57775653 chr16:57775655 nonsynonymous SNV 0.954 4 23 hm5C_associated_SNPs_53666 1 0 1 0 2 KATNB1 chr16:57775599 3'AG 57775599 Downstream 57bp
chr16 57775655 57775655 1 + G T LUAD 57775653 + 57775633 57775673 41 ACTGGTGCTGGGCAAAGCCTCCGGGCGGCTGCTGGCTACAG ACTGGTGCTGGGCAAAGCCTCCTGGCGGCTGCTGGCTACAG < 41bp 0.806396572929418 0.474681643926884 0.91147846 0.41957104 prediction 0.612793145858835 Functional Loss - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57775653 chr16:57775655 nonsynonymous SNV 0.954 4 23 hm5C_associated_SNPs_53666 1 0 1 0 2 KATNB1 chr16:57775729 5'GT 57775729 Upstream 75bp
chr20 61910347 61910347 1 + G T LUAD 61910344 + 61910324 61910364 41 AACGCCATGTCCTCCCTGTACTCGGTGAGGACTTGGCCCTG AACGCCATGTCCTCCCTGTACTCTGTGAGGACTTGGCCCTG < 41bp 0.88275312590354 0.576377429429056 0.16296118 0.060756326 prediction 0.612751392948969 Functional Loss - ARFGAP1 ENSG00000101199 CDS Human protein_coding chr20:61910344 chr20:61910347 synonymous SNV . 0 24 hm5C_associated_SNPs_53667 0 0 1 0 2 ARFGAP1 chr20:61910251 3'AG 61910251 Downstream 97bp
chr20 61910347 61910347 1 + G T LUAD 61910344 + 61910324 61910364 41 AACGCCATGTCCTCCCTGTACTCGGTGAGGACTTGGCCCTG AACGCCATGTCCTCCCTGTACTCTGTGAGGACTTGGCCCTG < 41bp 0.88275312590354 0.576377429429056 0.16296118 0.060756326 prediction 0.612751392948969 Functional Loss - ARFGAP1 ENSG00000101199 CDS Human protein_coding chr20:61910344 chr20:61910347 synonymous SNV . 0 24 hm5C_associated_SNPs_53667 0 0 1 0 2 ARFGAP1 chr20:61910347 5'GT 61910347 Upstream 1bp
chr17 7536237 7536237 1 + G T LUAD 7536234 + 7536214 7536254 41 CTGGCTCCCCTCCTTAACCTCTGGGCCAAGCCTCAAGGGCG CTGGCTCCCCTCCTTAACCTCTGTGCCAAGCCTCAAGGGCG < 41bp 0.806350674569851 0.486004681179693 0.640154 0.1896955 prediction 0.612701349139702 Functional Loss - SHBG ENSG00000129214 CDS Human protein_coding chr17:7536234 chr17:7536237 nonsynonymous SNV 0.589 3 24 hm5C_associated_SNPs_53668 0 0 0 0 1 SHBG chr17:7536277 5'GT 7536277 Upstream 41bp
chr8 30623765 30623765 1 + G T UCEC 30623762 + 30623742 30623782 41 GGTCTTATTTGACTGGATGACGAGAATTGGGTACCACATAT GGTCTTATTTGACTGGATGACGATAATTGGGTACCACATAT < 41bp 0.842066334799902 0.535718153877597 0.47287416 0.17680728 prediction 0.61269636184461 Functional Loss - UBXN8 ENSG00000104691 ncRNA_exonic Human protein_coding chr8:30623762 chr8:30623765 . 0.004 0 24 hm5C_associated_SNPs_53669 0 0 1 1 1 UBXN8 chr8:30623743 3'AG 30623743 Downstream 23bp
chr16 57765098 57765098 1 + G T LUAD 57765096 + 57765076 57765116 41 GACACAAGGAACTGGCCCCACTGAAGTACCTGGCTCTGGAG GACACAAGGAACTGGCCCCACTTAAGTACCTGGCTCTGGAG < 41bp 0.814005549517498 0.50767270400013 0.5781683 0.32613313 prediction 0.612665691034737 Functional Loss - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57765096 chr16:57765098 synonymous SNV . 0 23 hm5C_associated_SNPs_53671 0 0 1 0 1 DRC7 chr16:57765077 3'AG 57765077 Downstream 22bp
chr4 57888373 57888373 1 + G T UCEC 57888370 + 57888350 57888390 41 AGTCTAAAAAAGGATTTGATCAAGAAGAAGTTTTTGAGAAG AGTCTAAAAAAGGATTTGATCAATAAGAAGTTTTTGAGAAG < 41bp 0.806331995487978 0.460364297506802 0.7443278 0.07197118 prediction 0.612663990975957 Functional Loss - POLR2B ENSG00000047315 CDS Human protein_coding chr4:57888370 chr4:57888373 stopgain 1.000 1 24 hm5C_associated_SNPs_53672 0 0 1 0 1 POLR2B chr4:57888318 3'AG 57888318 Downstream 56bp
chr22 38084982 38084982 1 + G T LUSC 38084979 + 38084959 38084999 41 ACCTCTCGGGGGCCCGGCTGCTCGGGCTGACCCCACCTGAG ACCTCTCGGGGGCCCGGCTGCTCTGGCTGACCCCACCTGAG < 41bp 0.879804299198112 0.573487361493319 0.81775737 0.4850575 prediction 0.612633875409587 Functional Loss - NOL12 ENSG00000100101 CDS Human protein_coding chr22:38084979 chr22:38084982 nonsynonymous SNV 0.023 5 24 hm5C_associated_SNPs_53675 0 0 1 0 1 NOL12 chr22:38084999 5'GT 38084999 Upstream 18bp
chr2 73115696 73115696 1 + G T OV 73115694 + 73115674 73115714 41 TGCTGTTCCAGGTCCTGGCGCTGGAGGAACCTAATGTGAGG TGCTGTTCCAGGTCCTGGCGCTTGAGGAACCTAATGTGAGG < 41bp 0.806309560985774 0.496637721312369 0.42179272 0.21049798 prediction 0.612619121971549 Functional Loss - SPR ENSG00000116096 CDS Human protein_coding chr2:73115694 chr2:73115696 synonymous SNV . 0 23 hm5C_associated_SNPs_53677 0 0 0 0 1 SPR chr2:73115733 5'GT 73115733 Upstream 38bp
chr3 49749981 49749981 1 + G T CESC 49749979 + 49749959 49749999 41 CATTGAGCACGGTGATCGCACAGGGTCTCTCTTTGCCTTCA CATTGAGCACGGTGATCGCACATGGTCTCTCTTTGCCTTCA < 41bp 0.839364856036048 0.533074853611619 0.9309563 0.6175354 prediction 0.612580004848858 Functional Loss - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49749979 chr3:49749981 nonsynonymous SNV 0.112 4 23 hm5C_associated_SNPs_53682 0 0 1 1 1 RNF123 chr3:49749912 3'AG 49749912 Downstream 70bp
chr9 133556657 133556657 1 + G T THCA 133556654 + 133556634 133556674 41 GAGGACTTCCACCCGGCGGACTCGGCGGCTGGCCCCGCGGG GAGGACTTCCACCCGGCGGACTCTGCGGCTGGCCCCGCGGG < 41bp 0.874086704951782 0.567797574047469 0.70916176 0.35154247 prediction 0.612578261808627 Functional Loss - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133556654 chr9:133556657 synonymous SNV . 0 24 hm5C_associated_SNPs_53683 0 0 0 0 1 PRDM12 chr9:133556635 3'AG 133556635 Downstream 23bp
chr1 22333468 22333468 1 + A C rs143596163 22333464 + 22333444 22333484 41 CCCGCTGGTGACATCCTTCCCAACAAGACACCCTGCTACAT CCCGCTGGTGACATCCTTCCCAACCAGACACCCTGCTACAT < 41bp 0.806284013789601 0.405762351206819 0.031193048 0.014121234 prediction 0.612568027579203 Functional Loss - CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333464 chr1:22333468 nonsynonymous SNV 0.325 1 25 hm5C_associated_SNPs_53684 0 0 0 0 2 CELA3A chr1:22333371 3'AG 22333371 Downstream 98bp
chr1 22333468 22333468 1 + A C rs143596163 22333464 + 22333444 22333484 41 CCCGCTGGTGACATCCTTCCCAACAAGACACCCTGCTACAT CCCGCTGGTGACATCCTTCCCAACCAGACACCCTGCTACAT < 41bp 0.806284013789601 0.405762351206819 0.031193048 0.014121234 prediction 0.612568027579203 Functional Loss - CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333464 chr1:22333468 nonsynonymous SNV 0.325 1 25 hm5C_associated_SNPs_53684 0 0 0 0 2 CELA3A chr1:22333507 5'GT 22333507 Upstream 40bp
chr19 1220649 1220649 1 + G T LUAD 1220646 + 1220626 1220666 41 GCTCCCCGGCTTTCCAGCCGCCCGAGATTGCCAACGGCCTG GCTCCCCGGCTTTCCAGCCGCCCTAGATTGCCAACGGCCTG < 41bp 0.806245021291773 0.437344035504729 0.3267636 0.16497767 prediction 0.612490042583546 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1220646 chr19:1220649 stopgain 0.877 1 24 hm5C_associated_SNPs_53688 0 0 1 0 2 STK11 chr19:1220580 3'AG 1220580 Downstream 70bp
chr19 1220649 1220649 1 + G T LUAD 1220646 + 1220626 1220666 41 GCTCCCCGGCTTTCCAGCCGCCCGAGATTGCCAACGGCCTG GCTCCCCGGCTTTCCAGCCGCCCTAGATTGCCAACGGCCTG < 41bp 0.806245021291773 0.437344035504729 0.3267636 0.16497767 prediction 0.612490042583546 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1220646 chr19:1220649 stopgain 0.877 1 24 hm5C_associated_SNPs_53688 0 0 1 0 2 STK11 chr19:1220716 5'GT 1220716 Upstream 68bp
chr9 136891030 136891030 1 + G T rs190049012 136891027 + 136891007 136891047 41 CCTGGGGGCCCCTTCCGGTCCCGGGGCTGACGCCTGGCGGC CCTGGGGGCCCCTTCCGGTCCCGTGGCTGACGCCTGGCGGC < 41bp 0.884992106207036 0.57876463617082 0.9325493 0.75413406 prediction 0.612454940072434 Functional Loss - LINC00094 ENSG00000235106 ncRNA_exonic Human protein_coding chr9:136891027 chr9:136891030 . . 0 24 hm5C_associated_SNPs_53690 0 0 1 0 1 LINC00094 chr9:136890967 3'AG 136890967 Downstream 64bp
chr11 120096386 120096386 1 + G T LUAD 120096384 + 120096364 120096404 41 CTTCAGGATGTGAAGGTCTTCCGGGCCCTGATCCTGGGGGA CTTCAGGATGTGAAGGTCTTCCTGGCCCTGATCCTGGGGGA < 41bp 0.806221793220128 0.471350071160492 0.53039074 0.12329915 prediction 0.612443586440256 Functional Loss - OAF ENSG00000184232 CDS Human protein_coding chr11:120096384 chr11:120096386 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_53691 0 0 0 0 1 OAF chr11:120096370 3'AG 120096370 Downstream 17bp
chr22 50928059 50928059 1 + G T COAD 50928056 + 50928036 50928076 41 CAGGACCTGGCCATGCTGCCCTGGGTGCGGGAGTTCAAGTA CAGGACCTGGCCATGCTGCCCTGTGTGCGGGAGTTCAAGTA < 41bp 0.873333229191965 0.567119008466952 0.28232712 0.10711843 prediction 0.612428441450026 Functional Loss - MIOX ENSG00000100253 CDS Human protein_coding chr22:50928056 chr22:50928059 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_53692 0 0 0 0 3 MIOX chr22:50927961 3'AG 50927961 Downstream 99bp
chr22 50928059 50928059 1 + G T COAD 50928056 + 50928036 50928076 41 CAGGACCTGGCCATGCTGCCCTGGGTGCGGGAGTTCAAGTA CAGGACCTGGCCATGCTGCCCTGTGTGCGGGAGTTCAAGTA < 41bp 0.873333229191965 0.567119008466952 0.28232712 0.10711843 prediction 0.612428441450026 Functional Loss - MIOX ENSG00000100253 CDS Human protein_coding chr22:50928056 chr22:50928059 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_53692 0 0 0 0 3 MIOX chr22:50928059 5'GT 50928059 Upstream 1bp
chr22 50928059 50928059 1 + G T COAD 50928056 + 50928036 50928076 41 CAGGACCTGGCCATGCTGCCCTGGGTGCGGGAGTTCAAGTA CAGGACCTGGCCATGCTGCCCTGTGTGCGGGAGTTCAAGTA < 41bp 0.873333229191965 0.567119008466952 0.28232712 0.10711843 prediction 0.612428441450026 Functional Loss - MIOX ENSG00000100253 CDS Human protein_coding chr22:50928056 chr22:50928059 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_53692 0 0 0 0 3 MIOX chr22:50928073 5'GT 50928073 Upstream 15bp
chr19 41509945 41509945 1 + G T HNSC 41509942 + 41509922 41509962 41 GGGACGTCTTCACGGTACACCTGGGACCGAGGCCCGTGGTC GGGACGTCTTCACGGTACACCTGTGACCGAGGCCCGTGGTC < 41bp 0.806185685370774 0.414104026372602 0.23089895 0.04751721 prediction 0.612371370741549 Functional Loss - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41509942 chr19:41509945 stopgain 0.818 1 24 hm5C_associated_SNPs_53694 0 0 0 0 1 CYP2B6 chr19:41509906 3'AG 41509906 Downstream 40bp
chr20 56139401 56139401 1 + G T UCEC 56139399 + 56139379 56139419 41 CATTGATGAGCCGCTAGCTTCAGGTGTCACCATCACGTCCT CATTGATGAGCCGCTAGCTTCATGTGTCACCATCACGTCCT < 41bp 0.854953538792463 0.548779420108207 0.87415266 0.1928693 prediction 0.612348237368512 Functional Loss - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56139399 chr20:56139401 nonsynonymous SNV 0.005 3 23 hm5C_associated_SNPs_53696 0 0 1 0 1 PCK1 chr20:56139449 5'GT 56139449 Upstream 49bp
chr7 31142906 31142906 1 + G T UCEC 31142904 + 31142884 31142924 41 ACTATTCGGAATCCACTACACAGTATTTGCCTTCTCCCCAG ACTATTCGGAATCCACTACACATTATTTGCCTTCTCCCCAG < 41bp 0.806148668280018 0.485581448909928 0.10089058 0.15354788 prediction 0.612297336560037 Functional Loss - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31142904 chr7:31142906 nonsynonymous SNV 0.690 2 23 hm5C_associated_SNPs_53700 0 0 0 0 1 ADCYAP1R1 chr7:31142851 3'AG 31142851 Downstream 56bp
chr6 40347099 40347099 1 + G T rs187083545 40347096 + 40347076 40347116 41 GCACCGCCATTTTCTAGGAACTGGGAAGCCCCCCCACCCCT GCACCGCCATTTTCTAGGAACTGTGAAGCCCCCCCACCCCT < 41bp 0.87157157419278 0.565482039957378 0.8376193 0.15525734 prediction 0.612179068470804 Functional Loss - TDRG1 ENSG00000204091 ncRNA_exonic Human antisense chr6:40347096 chr6:40347099 . . 0 24 hm5C_associated_SNPs_53703 0 0 0 0 1 TDRG1 chr6:40347021 3'AG 40347021 Downstream 79bp
chr10 71868962 71868962 1 + A C COAD 71868958 + 71868938 71868978 41 GCGTTCCCGCCTTTCCCCAGCGGCAGGTAAGATGCAGTTCC GCGTTCCCGCCTTTCCCCAGCGGCCGGTAAGATGCAGTTCC < 41bp 0.806081303279731 0.408455580798282 0.8718256 0.8082057 prediction 0.612162606559463 Functional Loss - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71868958 chr10:71868962 synonymous SNV . 0 25 hm5C_associated_SNPs_53705 0 0 0 0 1 H2AFY2 chr10:71868963 5'GT 71868963 Upstream 2bp
chr15 85488006 85488006 1 + G T THCA 85488003 + 85487983 85488023 41 ACAGGGATCCTCTACATGCCCAGGGGGGCTGAAGTTGACTG ACAGGGATCCTCTACATGCCCAGTGGGGCTGAAGTTGACTG < 41bp 0.806069147669473 0.429806709825101 0.9472031 0.20530474 prediction 0.612138295338946 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85488003 chr15:85488006 nonsynonymous SNV 0.435 1 24 hm5C_associated_SNPs_53706 0 0 0 0 2 SLC28A1 chr15:85487987 3'AG 85487987 Downstream 20bp
chr15 85488006 85488006 1 + G T THCA 85488003 + 85487983 85488023 41 ACAGGGATCCTCTACATGCCCAGGGGGGCTGAAGTTGACTG ACAGGGATCCTCTACATGCCCAGTGGGGCTGAAGTTGACTG < 41bp 0.806069147669473 0.429806709825101 0.9472031 0.20530474 prediction 0.612138295338946 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85488003 chr15:85488006 nonsynonymous SNV 0.435 1 24 hm5C_associated_SNPs_53706 0 0 0 0 2 SLC28A1 chr15:85488098 5'GT 85488098 Upstream 93bp
chr8 23148978 23148978 1 + G T rs2272760 23148975 + 23148955 23148995 41 GGAGAGAAGGACCTTGCCCACGTGGTAGAGATCTATGACTT GGAGAGAAGGACCTTGCCCACGTTGTAGAGATCTATGACTT < 41bp 0.806049135127803 0.431366524622625 0.5360525 0.14102063 prediction 0.612098270255605 Functional Loss - R3HCC1 ENSG00000104679 CDS Human protein_coding chr8:23148975 chr8:23148978 synonymous SNV . 0 24 hm5C_associated_SNPs_53707 0 0 1 0 1 R3HCC1 chr8:23149046 5'GT 23149046 Upstream 69bp
chr1 55136510 55136510 1 + G T LUAD 55136508 + 55136488 55136528 41 CCTGGGCATGCGGGAGAGGTCGGAGCTGGTGAACGTGTGTG CCTGGGCATGCGGGAGAGGTCGTAGCTGGTGAACGTGTGTG < 41bp 0.845783335827467 0.539746868467447 0.917227 0.43312055 prediction 0.61207293472004 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55136508 chr1:55136510 stopgain 0.062 1 23 hm5C_associated_SNPs_53708 0 0 0 0 2 MROH7 chr1:55136473 3'AG 55136473 Downstream 38bp
chr1 55136510 55136510 1 + G T LUAD 55136508 + 55136488 55136528 41 CCTGGGCATGCGGGAGAGGTCGGAGCTGGTGAACGTGTGTG CCTGGGCATGCGGGAGAGGTCGTAGCTGGTGAACGTGTGTG < 41bp 0.845783335827467 0.539746868467447 0.917227 0.43312055 prediction 0.61207293472004 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55136508 chr1:55136510 stopgain 0.062 1 23 hm5C_associated_SNPs_53708 0 0 0 0 2 MROH7 chr1:55136602 5'GT 55136602 Upstream 93bp
chr13 108922737 108922737 1 + G T UCEC 108922735 + 108922715 108922755 41 GGCAACTCCAGTCAGAACAGCAGAAATAAGCGTGCCGTTCA GGCAACTCCAGTCAGAACAGCATAAATAAGCGTGCCGTTCA < 41bp 0.806022595880918 0.485546995466172 0.88730395 0.21877977 prediction 0.612045191761837 Functional Loss - TNFSF13B ENSG00000102524 CDS Human protein_coding chr13:108922735 chr13:108922737 nonsynonymous SNV 0.003 3 23 hm5C_associated_SNPs_53709 0 0 0 0 2 TNFSF13B chr13:108922688 3'AG 108922688 Downstream 50bp
chr13 108922737 108922737 1 + G T UCEC 108922735 + 108922715 108922755 41 GGCAACTCCAGTCAGAACAGCAGAAATAAGCGTGCCGTTCA GGCAACTCCAGTCAGAACAGCATAAATAAGCGTGCCGTTCA < 41bp 0.806022595880918 0.485546995466172 0.88730395 0.21877977 prediction 0.612045191761837 Functional Loss - TNFSF13B ENSG00000102524 CDS Human protein_coding chr13:108922735 chr13:108922737 nonsynonymous SNV 0.003 3 23 hm5C_associated_SNPs_53709 0 0 0 0 2 TNFSF13B chr13:108922772 5'GT 108922772 Upstream 36bp
chr9 17791274 17791274 1 + G T LUAD 17791271 + 17791251 17791291 41 CTGCACTTGTGCAAGCTCAGCTGGAGTACCACAAGCAGGCA CTGCACTTGTGCAAGCTCAGCTGTAGTACCACAAGCAGGCA < 41bp 0.879432603254823 0.573419115297195 0.31191945 0.1609639 prediction 0.612026975915257 Functional Loss - SH3GL2 ENSG00000107295 CDS Human protein_coding chr9:17791271 chr9:17791274 stopgain 0.996 1 24 hm5C_associated_SNPs_53713 0 0 0 0 2 SH3GL2 chr9:17791229 3'AG 17791229 Downstream 46bp
chr9 17791274 17791274 1 + G T LUAD 17791271 + 17791251 17791291 41 CTGCACTTGTGCAAGCTCAGCTGGAGTACCACAAGCAGGCA CTGCACTTGTGCAAGCTCAGCTGTAGTACCACAAGCAGGCA < 41bp 0.879432603254823 0.573419115297195 0.31191945 0.1609639 prediction 0.612026975915257 Functional Loss - SH3GL2 ENSG00000107295 CDS Human protein_coding chr9:17791271 chr9:17791274 stopgain 0.996 1 24 hm5C_associated_SNPs_53713 0 0 0 0 2 SH3GL2 chr9:17791332 5'GT 17791332 Upstream 59bp
chr12 7867828 7867828 1 + G T LUSC 7867825 + 7867805 7867845 41 TTGATAAAGAACCTTAGTAACTTGACTATCAACGCTAGTAG TTGATAAAGAACCTTAGTAACTTTACTATCAACGCTAGTAG < 41bp 0.805998040182968 0.45271711305634 0.16444206 0.07918757 prediction 0.611996080365936 Functional Loss - DPPA3 ENSG00000187569 CDS Human protein_coding chr12:7867825 chr12:7867828 nonsynonymous SNV 0.003 3 24 hm5C_associated_SNPs_53715 0 0 0 0 1 DPPA3 chr12:7867779 3'AG 7867779 Downstream 50bp
chr1 47282730 47282730 1 + G T LUAD 47282727 + 47282707 47282747 41 GTGTTGCTGGCAGGGATGATCTGGGCAAAATGACTTATCTG GTGTTGCTGGCAGGGATGATCTGTGCAAAATGACTTATCTG < 41bp 0.88060045835287 0.57460930147312 0.82080793 0.22087094 prediction 0.611982313759501 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47282727 chr1:47282730 nonsynonymous SNV 0.890 3 24 hm5C_associated_SNPs_53716 0 0 0 0 1 CYP4B1 chr1:47282720 3'AG 47282720 Downstream 11bp
chr12 133197629 133197629 1 + G T SARC 133197626 + 133197606 133197646 41 TTATCAACTGGGACTGTGACCTGGACCTGCCTGCATCGGAG TTATCAACTGGGACTGTGACCTGTACCTGCCTGCATCGGAG < 41bp 0.880600937249341 0.57463276900565 0.6229741 0.12079933 prediction 0.611936336487381 Functional Loss - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133197626 chr12:133197629 nonsynonymous SNV 0.956 4 24 hm5C_associated_SNPs_53718 0 0 0 0 1 P2RX2 chr12:133197717 5'GT 133197717 Upstream 89bp
chr17 20319895 20319895 1 + G T LUSC 20319892 + 20319872 20319912 41 GCCGGATCAGGTCCTGGGGCCGGGGGAAGCACTTGCTGTCA GCCGGATCAGGTCCTGGGGCCGGTGGAAGCACTTGCTGTCA < 41bp 0.865060414407444 0.559114572489884 0.909441 0.8604367 prediction 0.611891683835119 Functional Loss - USP32P3 ENSG00000189423;ENSG00000237911 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:20319892 chr17:20319895 . . 0 24 hm5C_associated_SNPs_53721 0 0 0 4 1 USP32P3 chr17:20319805 3'AG 20319805 Downstream 91bp
chr11 63978540 63978540 1 + G T LIHC 63978537 + 63978517 63978557 41 CCCTCAGGCATCCGGCACCCCGAGGAGCTGTCCCTGCTCCG CCCTCAGGCATCCGGCACCCCGATGAGCTGTCCCTGCTCCG < 41bp 0.805942751725831 0.409925391421249 0.9016513 0.3445987 prediction 0.611885503451661 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63978537 chr11:63978540 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_53722 0 0 1 0 1 FERMT3 chr11:63978524 3'AG 63978524 Downstream 17bp
chr19 43858435 43858435 1 + G T LUAD 43858432 + 43858412 43858452 41 GAGCCCCGCGTCACTGAGCACCGGATGGGCCCCGGCCTCTC GAGCCCCGCGTCACTGAGCACCGTATGGGCCCCGGCCTCTC < 41bp 0.887271642432917 0.581335193944497 0.76090586 0.32886675 prediction 0.61187289697684 Functional Loss - CD177 ENSG00000204936 CDS Human protein_coding chr19:43858432 chr19:43858435 synonymous SNV . 0 24 hm5C_associated_SNPs_53723 0 0 1 0 1 CD177 chr19:43858359 3'AG 43858359 Downstream 77bp
chr16 78056600 78056600 1 + G T UCEC 78056597 + 78056577 78056617 41 CCAGACCACCAGCCACACATCCAGATTAAAAGCCAGGAAGC CCAGACCACCAGCCACACATCCATATTAAAAGCCAGGAAGC < 41bp 0.805936144408639 0.445725687048285 0.31051216 0.06195098 prediction 0.611872288817277 Functional Loss - CLEC3A ENSG00000166509 CDS Human protein_coding chr16:78056597 chr16:78056600 nonsynonymous SNV 0.068 1 24 hm5C_associated_SNPs_53724 0 0 0 0 1 CLEC3A chr16:78056638 5'GT 78056638 Upstream 39bp
chr11 111386831 111386831 1 + A T LUAD 111386827 + 111386807 111386847 41 CTGAGGAGAAAGTAAAGTATCTCCAAAAGGTAGGCCAATAT CTGAGGAGAAAGTAAAGTATCTCCTAAAGGTAGGCCAATAT < 41bp 0.805920591443378 0.483604462257569 0.95403767 0.14625406 prediction 0.611841182886755 Functional Loss - C11orf88 ENSG00000183644 CDS Human protein_coding chr11:111386827 chr11:111386831 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_53726 0 0 0 0 2 C11orf88 chr11:111386765 3'AG 111386765 Downstream 67bp
chr11 111386831 111386831 1 + A T LUAD 111386827 + 111386807 111386847 41 CTGAGGAGAAAGTAAAGTATCTCCAAAAGGTAGGCCAATAT CTGAGGAGAAAGTAAAGTATCTCCTAAAGGTAGGCCAATAT < 41bp 0.805920591443378 0.483604462257569 0.95403767 0.14625406 prediction 0.611841182886755 Functional Loss - C11orf88 ENSG00000183644 CDS Human protein_coding chr11:111386827 chr11:111386831 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_53726 0 0 0 0 2 C11orf88 chr11:111386835 5'GT 111386835 Upstream 5bp
chr8 42179461 42179461 1 + G T LIHC 42179458 + 42179438 42179478 41 CAGGAGACTAAGGGAAAAACCTCGAGGTAAGTGGGGTTCTG CAGGAGACTAAGGGAAAAACCTCTAGGTAAGTGGGGTTCTG < 41bp 0.856318396731205 0.550425096994564 0.8124504 0.8789886 prediction 0.611786599473281 Functional Loss - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42179458 chr8:42179461 nonsynonymous SNV 0.037 3 24 hm5C_associated_SNPs_53727 0 0 1 0 2 IKBKB chr8:42179414 3'AG 42179414 Downstream 48bp
chr8 42179461 42179461 1 + G T LIHC 42179458 + 42179438 42179478 41 CAGGAGACTAAGGGAAAAACCTCGAGGTAAGTGGGGTTCTG CAGGAGACTAAGGGAAAAACCTCTAGGTAAGTGGGGTTCTG < 41bp 0.856318396731205 0.550425096994564 0.8124504 0.8789886 prediction 0.611786599473281 Functional Loss - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42179458 chr8:42179461 nonsynonymous SNV 0.037 3 24 hm5C_associated_SNPs_53727 0 0 1 0 2 IKBKB chr8:42179463 5'GT 42179463 Upstream 3bp
chr9 131289510 131289510 1 + G T UCEC 131289508 + 131289488 131289528 41 TGCAGTGGTACCAGCAGCTGCAGGATGCTTCCATGCAGTGT TGCAGTGGTACCAGCAGCTGCATGATGCTTCCATGCAGTGT < 41bp 0.805876253649431 0.49384599482847 0.912596 0.08913976 prediction 0.611752507298862 Functional Loss - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131289508 chr9:131289510 nonsynonymous SNV 0.957 4 23 hm5C_associated_SNPs_53729 0 0 1 0 2 GLE1 chr9:131289458 3'AG 131289458 Downstream 53bp
chr9 131289510 131289510 1 + G T UCEC 131289508 + 131289488 131289528 41 TGCAGTGGTACCAGCAGCTGCAGGATGCTTCCATGCAGTGT TGCAGTGGTACCAGCAGCTGCATGATGCTTCCATGCAGTGT < 41bp 0.805876253649431 0.49384599482847 0.912596 0.08913976 prediction 0.611752507298862 Functional Loss - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131289508 chr9:131289510 nonsynonymous SNV 0.957 4 23 hm5C_associated_SNPs_53729 0 0 1 0 2 GLE1 chr9:131289570 5'GT 131289570 Upstream 61bp
chr19 6937293 6937293 1 + G T LUAD 6937291 + 6937271 6937311 41 CCTTTGCCCAGCTCTTCATCCTGGGCTGCTCCTGGGTGCTG CCTTTGCCCAGCTCTTCATCCTTGGCTGCTCCTGGGTGCTG < 41bp 0.837418947373649 0.531547264349791 0.5096579 0.07006058 prediction 0.611743366047717 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6937291 chr19:6937293 synonymous SNV . 0 23 hm5C_associated_SNPs_53731 0 0 0 0 1 ADGRE1 chr19:6937254 3'AG 6937254 Downstream 40bp
chrX 1501334 1501334 1 + A C LUSC 1501330 + 1501310 1501350 41 CCTGGAGGAGTGTCTGGTGACTGAAGTACAGGTCGTGCAGA CCTGGAGGAGTGTCTGGTGACTGACGTACAGGTCGTGCAGA < 41bp 0.879927042510091 0.574056528916034 0.22795612 0.16654915 prediction 0.611741027188113 Functional Loss - IL3RA ENSG00000185291 CDS Human protein_coding chrX:1501330 chrX:1501334 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_53732 0 0 0 0 1 IL3RA chrX:1501284 3'AG 1501284 Downstream 51bp
chr3 133473450 133473450 1 + G T LUAD 133473447 + 133473427 133473467 41 CACGGGTCTAGGCAGGTCCGCTGGGTGGAACATCCCCATAG CACGGGTCTAGGCAGGTCCGCTGTGTGGAACATCCCCATAG < 41bp 0.805847883847211 0.419902887352499 0.8773261 0.12023184 prediction 0.611695767694421 Functional Loss - TF ENSG00000091513 CDS Human protein_coding chr3:133473447 chr3:133473450 nonsynonymous SNV 0.108 4 24 hm5C_associated_SNPs_53733 0 0 1 0 1 TF chr3:133473515 5'GT 133473515 Upstream 66bp
chr9 139802569 139802569 1 + G T LUSC 139802566 + 139802546 139802586 41 CTCATGCTGACCGAATGTCCCGCGTGCAAAGGCCTGGTCCG CTCATGCTGACCGAATGTCCCGCTTGCAAAGGCCTGGTCCG < 41bp 0.805832670910006 0.423503300574877 0.14145622 0.021417022 prediction 0.611665341820012 Functional Loss - TRAF2 ENSG00000127191 CDS Human protein_coding chr9:139802566 chr9:139802569 synonymous SNV . 0 24 hm5C_associated_SNPs_53736 0 0 1 0 1 TRAF2 chr9:139802522 3'AG 139802522 Downstream 48bp
chrX 140983082 140983082 1 + G T LUSC 140983080 + 140983060 140983100 41 GTCAGCCTTGGCAGGGTTCGCGGATGTGCTTTCCCGACTTG GTCAGCCTTGGCAGGGTTCGCGTATGTGCTTTCCCGACTTG < 41bp 0.845712877973906 0.539881605319245 0.92610234 0.6964955 prediction 0.611662545309321 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140983080 chrX:140983082 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_53737 0 0 0 0 1 MAGEC3 chrX:140983055 3'AG 140983055 Downstream 28bp
chr5 175798778 175798778 1 + G T COAD 175798776 + 175798756 175798796 41 TGCAGCGGGAGCTGGGTCTACAGGCTATCGATAACCAGCGG TGCAGCGGGAGCTGGGTCTACATGCTATCGATAACCAGCGG < 41bp 0.805826901291465 0.486248928361608 0.8168938 0.44233853 prediction 0.611653802582929 Functional Loss - ARL10 ENSG00000175414 CDS Human protein_coding chr5:175798776 chr5:175798778 nonsynonymous SNV 0.221 0 23 hm5C_associated_SNPs_53739 0 0 0 0 1 ARL10 chr5:175798725 3'AG 175798725 Downstream 54bp
chr2 114391739 114391739 1 + G T UCEC 114391737 + 114391717 114391757 41 AACCTGAGTGCAGTCAGCCACAGCAGCTGTCCACGTACGCC AACCTGAGTGCAGTCAGCCACATCAGCTGTCCACGTACGCC < 41bp 0.805811204916765 0.492549154110415 0.532264 0.15431032 prediction 0.61162240983353 Functional Loss - RABL2A ENSG00000144134 CDS Human protein_coding chr2:114391737 chr2:114391739 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_53740 0 0 0 0 2 RABL2A chr2:114391730 3'AG 114391730 Downstream 10bp
chr2 114391739 114391739 1 + G T UCEC 114391737 + 114391717 114391757 41 AACCTGAGTGCAGTCAGCCACAGCAGCTGTCCACGTACGCC AACCTGAGTGCAGTCAGCCACATCAGCTGTCCACGTACGCC < 41bp 0.805811204916765 0.492549154110415 0.532264 0.15431032 prediction 0.61162240983353 Functional Loss - RABL2A ENSG00000144134 CDS Human protein_coding chr2:114391737 chr2:114391739 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_53740 0 0 0 0 2 RABL2A chr2:114391809 5'GT 114391809 Upstream 71bp
chr7 76062827 76062827 1 + G T SKCM 76062825 + 76062805 76062845 41 AGAGGTCCCCCACCTTCCACCTGGGAGATGCAGCCCACCTC AGAGGTCCCCCACCTTCCACCTTGGAGATGCAGCCCACCTC < 41bp 0.846536620897209 0.540751573698192 0.3522401 0.03176841 prediction 0.611570094398033 Functional Loss - ZP3 ENSG00000188372 CDS Human protein_coding chr7:76062825 chr7:76062827 synonymous SNV . 0 23 hm5C_associated_SNPs_53747 0 0 0 0 1 ZP3 chr7:76062787 3'AG 76062787 Downstream 41bp
chr4 78079767 78079767 1 + G T GBM 78079764 + 78079744 78079784 41 TGTTGAACGTCTACCTGGAACAAGAAGAGAGATTCCAACCT TGTTGAACGTCTACCTGGAACAATAAGAGAGATTCCAACCT < 41bp 0.874983474897024 0.569199161845988 0.2911449 0.039856017 prediction 0.611568626102073 Functional Loss - CCNG2 ENSG00000138764 CDS Human protein_coding chr4:78079764 chr4:78079767 stopgain 0.963 1 24 hm5C_associated_SNPs_53748 0 0 1 0 2 CCNG2 chr4:78079686 3'AG 78079686 Downstream 82bp
chr4 78079767 78079767 1 + G T GBM 78079764 + 78079744 78079784 41 TGTTGAACGTCTACCTGGAACAAGAAGAGAGATTCCAACCT TGTTGAACGTCTACCTGGAACAATAAGAGAGATTCCAACCT < 41bp 0.874983474897024 0.569199161845988 0.2911449 0.039856017 prediction 0.611568626102073 Functional Loss - CCNG2 ENSG00000138764 CDS Human protein_coding chr4:78079764 chr4:78079767 stopgain 0.963 1 24 hm5C_associated_SNPs_53748 0 0 1 0 2 CCNG2 chr4:78079823 5'GT 78079823 Upstream 57bp
chr3 53222784 53222784 1 + G T STAD 53222781 + 53222761 53222801 41 CTGGACCGGGATGGCCACATCAAGATTGCCGACTTTGGGAT CTGGACCGGGATGGCCACATCAATATTGCCGACTTTGGGAT < 41bp 0.881402950754101 0.575638327046538 0.42977417 0.118861556 prediction 0.611529247415126 Functional Loss - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53222781 chr3:53222784 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_53749 0 0 0 0 2 PRKCD chr3:53222736 3'AG 53222736 Downstream 49bp
chr3 53222784 53222784 1 + G T STAD 53222781 + 53222761 53222801 41 CTGGACCGGGATGGCCACATCAAGATTGCCGACTTTGGGAT CTGGACCGGGATGGCCACATCAATATTGCCGACTTTGGGAT < 41bp 0.881402950754101 0.575638327046538 0.42977417 0.118861556 prediction 0.611529247415126 Functional Loss - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53222781 chr3:53222784 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_53749 0 0 0 0 2 PRKCD chr3:53222874 5'GT 53222874 Upstream 91bp
chr12 62979189 62979189 1 + A C UCEC 62979185 + 62979165 62979205 41 ACCTCAAGAAGGCTACATCTCACGAATGGCACTCTCAGTGC ACCTCAAGAAGGCTACATCTCACGCATGGCACTCTCAGTGC < 41bp 0.881980083638038 0.576232460380702 0.025139153 0.009996891 prediction 0.611495246514671 Functional Loss - MON2 ENSG00000061987 CDS Human protein_coding chr12:62979185 chr12:62979189 synonymous SNV . 0 25 hm5C_associated_SNPs_53750 0 0 1 0 1 MON2 chr12:62979281 5'GT 62979281 Upstream 93bp
chr12 34175705 34175705 1 + G T LUAD 34175702 + 34175682 34175722 41 GAGGGCCATTTCTCCCTTTCCCAGGTGGGGTCCCCAACCTG GAGGGCCATTTCTCCCTTTCCCATGTGGGGTCCCCAACCTG < 41bp 0.805746004723713 0.442441360030337 0.8345455 0.24481672 prediction 0.611492009447426 Functional Loss - ALG10 ENSG00000139133 CDS Human protein_coding chr12:34175702 chr12:34175705 nonsynonymous SNV 0.888 1 24 hm5C_associated_SNPs_53751 0 0 1 0 1 ALG10 chr12:34175705 5'GT 34175705 Upstream 1bp
chr17 73481600 73481600 1 + G T UCEC 73481598 + 73481578 73481618 41 GCAGTGCTGGAAGGACATCTCAGGGAGCGGAAGAAGTGTCT GCAGTGCTGGAAGGACATCTCATGGAGCGGAAGAAGTGTCT < 41bp 0.842144655176122 0.536434592968391 0.8866264 0.6079561 prediction 0.611420124415463 Functional Loss - TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73481598 chr17:73481600 nonsynonymous SNV 0.124 1 23 hm5C_associated_SNPs_53753 0 0 1 0 2 TMEM94 chr17:73481509 3'AG 73481509 Downstream 92bp
chr17 73481600 73481600 1 + G T UCEC 73481598 + 73481578 73481618 41 GCAGTGCTGGAAGGACATCTCAGGGAGCGGAAGAAGTGTCT GCAGTGCTGGAAGGACATCTCATGGAGCGGAAGAAGTGTCT < 41bp 0.842144655176122 0.536434592968391 0.8866264 0.6079561 prediction 0.611420124415463 Functional Loss - TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73481598 chr17:73481600 nonsynonymous SNV 0.124 1 23 hm5C_associated_SNPs_53753 0 0 1 0 2 TMEM94 chr17:73481628 5'GT 73481628 Upstream 29bp
chr6 89862895 89862895 1 + A T HNSC 89862891 + 89862871 89862911 41 AGACAGCAAATGAAACCAACCTGGAGAGTTCATGGTATGAA AGACAGCAAATGAAACCAACCTGGTGAGTTCATGGTATGAA < 41bp 0.806672525358026 0.500965297575695 0.06663275 0.08016348 prediction 0.611414455564661 Functional Loss - PM20D2 ENSG00000146281 CDS Human protein_coding chr6:89862891 chr6:89862895 stopgain 1.000 1 25 hm5C_associated_SNPs_53756 0 0 1 0 1 PM20D2 chr6:89862904 5'GT 89862904 Upstream 10bp
chr2 131100699 131100699 1 + G T HNSC 131100697 + 131100677 131100717 41 CTGCGCCGCGAGTACCTGTACCGCAAGGCCCGGGAGGAGGC CTGCGCCGCGAGTACCTGTACCTCAAGGCCCGGGAGGAGGC < 41bp 0.829808645464646 0.52411465369388 0.05151871 0.020799369 prediction 0.611387983541532 Functional Loss - IMP4 ENSG00000136718 CDS Human protein_coding chr2:131100697 chr2:131100699 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_53758 0 0 1 0 2 IMP4 chr2:131100659 3'AG 131100659 Downstream 41bp
chr2 131100699 131100699 1 + G T HNSC 131100697 + 131100677 131100717 41 CTGCGCCGCGAGTACCTGTACCGCAAGGCCCGGGAGGAGGC CTGCGCCGCGAGTACCTGTACCTCAAGGCCCGGGAGGAGGC < 41bp 0.829808645464646 0.52411465369388 0.05151871 0.020799369 prediction 0.611387983541532 Functional Loss - IMP4 ENSG00000136718 CDS Human protein_coding chr2:131100697 chr2:131100699 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_53758 0 0 1 0 2 IMP4 chr2:131100767 5'GT 131100767 Upstream 69bp
chr16 67208964 67208964 1 + G T SARC 67208962 + 67208942 67208982 41 ATCTCTAGATTCCTGAAGGCCAGAGCTCTGACAGGCGGTGC ATCTCTAGATTCCTGAAGGCCATAGCTCTGACAGGCGGTGC < 41bp 0.805658899912408 0.495551961810567 0.33715048 0.16546977 prediction 0.611317799824816 Functional Loss - NOL3 ENSG00000140939 CDS Human protein_coding chr16:67208962 chr16:67208964 nonsynonymous SNV 0.004 1 23 hm5C_associated_SNPs_53763 0 0 1 0 1 NOL3 chr16:67208950 3'AG 67208950 Downstream 15bp
chr7 12620741 12620741 1 + G T UCEC 12620738 + 12620718 12620758 41 CTTACGAACGACCTGACAGCCAAGAGGCTCCTACATGTGAA CTTACGAACGACCTGACAGCCAATAGGCTCCTACATGTGAA < 41bp 0.878022158347588 0.572369076635111 0.6630566 0.09271014 prediction 0.611306163424953 Functional Loss - SCIN ENSG00000006747 CDS Human protein_coding chr7:12620738 chr7:12620741 nonsynonymous SNV 0.613 1 24 hm5C_associated_SNPs_53765 0 0 0 0 1 SCIN chr7:12620685 3'AG 12620685 Downstream 57bp
chr1 19582447 19582447 1 + G T LUAD 19582445 + 19582425 19582465 41 CGTGAATTGTCCCACAGCTTCGGAAATGTGTGGACACCTAC CGTGAATTGTCCCACAGCTTCGTAAATGTGTGGACACCTAC < 41bp 0.805643623345605 0.4929869108866 0.4590749 0.19605312 prediction 0.61128724669121 Functional Loss - MRTO4 ENSG00000053372 CDS Human protein_coding chr1:19582445 chr1:19582447 synonymous SNV . 0 23 hm5C_associated_SNPs_53768 0 0 1 0 2 MRTO4 chr1:19582442 3'AG 19582442 Downstream 6bp
chr1 19582447 19582447 1 + G T LUAD 19582445 + 19582425 19582465 41 CGTGAATTGTCCCACAGCTTCGGAAATGTGTGGACACCTAC CGTGAATTGTCCCACAGCTTCGTAAATGTGTGGACACCTAC < 41bp 0.805643623345605 0.4929869108866 0.4590749 0.19605312 prediction 0.61128724669121 Functional Loss - MRTO4 ENSG00000053372 CDS Human protein_coding chr1:19582445 chr1:19582447 synonymous SNV . 0 23 hm5C_associated_SNPs_53768 0 0 1 0 2 MRTO4 chr1:19582545 5'GT 19582545 Upstream 99bp
chr1 156554699 156554699 1 + G T STAD 156554697 + 156554677 156554717 41 TCCGGGAAGACTCCAGGCTCCAGGTGGGGCCAGCCAGGCGG TCCGGGAAGACTCCAGGCTCCATGTGGGGCCAGCCAGGCGG < 41bp 0.843013797599348 0.537374299258296 0.8058679 0.43083903 prediction 0.611278996682103 Functional Loss - TTC24 ENSG00000187862 CDS Human protein_coding chr1:156554697 chr1:156554699 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_53770 0 0 0 0 2 TTC24 chr1:156554669 3'AG 156554669 Downstream 31bp
chr1 156554699 156554699 1 + G T STAD 156554697 + 156554677 156554717 41 TCCGGGAAGACTCCAGGCTCCAGGTGGGGCCAGCCAGGCGG TCCGGGAAGACTCCAGGCTCCATGTGGGGCCAGCCAGGCGG < 41bp 0.843013797599348 0.537374299258296 0.8058679 0.43083903 prediction 0.611278996682103 Functional Loss - TTC24 ENSG00000187862 CDS Human protein_coding chr1:156554697 chr1:156554699 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_53770 0 0 0 0 2 TTC24 chr1:156554766 5'GT 156554766 Upstream 68bp
chr20 333868 333868 1 + G T THCA 333865 + 333845 333885 41 TCTCCCTAGATCAGCCTGTCCTCGGGGACCCTGCTTCTGCT TCTCCCTAGATCAGCCTGTCCTCTGGGACCCTGCTTCTGCT < 41bp 0.805630694623944 0.428238883252835 0.15561107 0.09245649 prediction 0.611261389247887 Functional Loss - NRSN2 ENSG00000125841 CDS Human protein_coding chr20:333865 chr20:333868 synonymous SNV . 0 24 hm5C_associated_SNPs_53772 0 0 1 0 1 NRSN2 chr20:333854 3'AG 333854 Downstream 15bp
chr14 96706825 96706825 1 + G T STAD 96706822 + 96706802 96706842 41 AATGCCCCCAAGTGGAGTGGCTGGGCTGGCTCAACACCATC AATGCCCCCAAGTGGAGTGGCTGTGCTGGCTCAACACCATC < 41bp 0.805621904316488 0.442653006400494 0.26049456 0.026683748 prediction 0.611243808632975 Functional Loss - BDKRB2 ENSG00000168398 CDS Human protein_coding chr14:96706822 chr14:96706825 nonsynonymous SNV 0.008 2 24 hm5C_associated_SNPs_53775 0 0 0 0 1 BDKRB2 chr14:96706740 3'AG 96706740 Downstream 86bp
chr17 26574890 26574890 1 + G T COAD 26574887 + 26574867 26574907 41 TGAAACCGGTGGGCTGGCACCTGGGCACAGTGCTTCCAGGT TGAAACCGGTGGGCTGGCACCTGTGCACAGTGCTTCCAGGT < 41bp 0.853547259225162 0.547938073462386 0.5145514 0.15163013 prediction 0.611218371525552 Functional Loss - PPY2P ENSG00000265060;ENSG00000266830 ncRNA_exonic Human other chr17:26574887 chr17:26574890 . . 0 24 hm5C_associated_SNPs_53778 0 0 0 0 1 PPY2P chr17:26574976 5'GT 26574976 Upstream 87bp
chr16 88773618 88773618 1 + G T BRCA 88773616 + 88773596 88773636 41 CGAGCCGGAGATGCCTTCTGCAGGTGAGGCCTGGAGGTGGC CGAGCCGGAGATGCCTTCTGCATGTGAGGCCTGGAGGTGGC < 41bp 0.805557406852663 0.4773047614061 0.8793942 0.53884387 prediction 0.611114813705325 Functional Loss - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88773616 chr16:88773618 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_53781 0 0 1 0 2 CTU2 chr16:88773544 3'AG 88773544 Downstream 75bp
chr16 88773618 88773618 1 + G T BRCA 88773616 + 88773596 88773636 41 CGAGCCGGAGATGCCTTCTGCAGGTGAGGCCTGGAGGTGGC CGAGCCGGAGATGCCTTCTGCATGTGAGGCCTGGAGGTGGC < 41bp 0.805557406852663 0.4773047614061 0.8793942 0.53884387 prediction 0.611114813705325 Functional Loss - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88773616 chr16:88773618 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_53781 0 0 1 0 2 CTU2 chr16:88773618 5'GT 88773618 Upstream 1bp
chr15 78454661 78454661 1 + G T LUSC 78454659 + 78454639 78454679 41 GAGTTTGCCTTTGAGTATGCCCGGAACAACCACCGGAGCAA GAGTTTGCCTTTGAGTATGCCCTGAACAACCACCGGAGCAA < 41bp 0.805553591739396 0.489473843143307 0.41998097 0.060964644 prediction 0.611107183478792 Functional Loss - IDH3A ENSG00000166411 CDS Human protein_coding chr15:78454659 chr15:78454661 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_53782 0 0 1 0 2 IDH3A chr15:78454576 3'AG 78454576 Downstream 86bp
chr15 78454661 78454661 1 + G T LUSC 78454659 + 78454639 78454679 41 GAGTTTGCCTTTGAGTATGCCCGGAACAACCACCGGAGCAA GAGTTTGCCTTTGAGTATGCCCTGAACAACCACCGGAGCAA < 41bp 0.805553591739396 0.489473843143307 0.41998097 0.060964644 prediction 0.611107183478792 Functional Loss - IDH3A ENSG00000166411 CDS Human protein_coding chr15:78454659 chr15:78454661 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_53782 0 0 1 0 2 IDH3A chr15:78454709 5'GT 78454709 Upstream 49bp
chr10 71008464 71008464 1 + G T LUSC 71008462 + 71008442 71008482 41 AGGATGCTGCCCACCTACGTCTGCGGGCTGCCGGACGGCAC AGGATGCTGCCCACCTACGTCTTCGGGCTGCCGGACGGCAC < 41bp 0.837841949888597 0.532292526484837 0.40768903 0.31603792 prediction 0.611098846807521 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71008462 chr10:71008464 nonsynonymous SNV 0.085 2 23 hm5C_associated_SNPs_53783 0 0 0 0 1 HKDC1 chr10:71008484 5'GT 71008484 Upstream 21bp
chr19 40009409 40009409 1 + G T LUAD 40009407 + 40009387 40009427 41 TACTGAAAAAGAGCCTGGAGCAGCAATTTCCGAATCACCTA TACTGAAAAAGAGCCTGGAGCATCAATTTCCGAATCACCTA < 41bp 0.805546227595218 0.487918660160004 0.07294947 0.10117823 prediction 0.611092455190435 Functional Loss - SELENOV ENSG00000186838 CDS Human protein_coding chr19:40009407 chr19:40009409 nonsynonymous SNV 0.414 0 23 hm5C_associated_SNPs_53784 0 0 0 0 2 SELENOV chr19:40009380 3'AG 40009380 Downstream 30bp
chr19 40009409 40009409 1 + G T LUAD 40009407 + 40009387 40009427 41 TACTGAAAAAGAGCCTGGAGCAGCAATTTCCGAATCACCTA TACTGAAAAAGAGCCTGGAGCATCAATTTCCGAATCACCTA < 41bp 0.805546227595218 0.487918660160004 0.07294947 0.10117823 prediction 0.611092455190435 Functional Loss - SELENOV ENSG00000186838 CDS Human protein_coding chr19:40009407 chr19:40009409 nonsynonymous SNV 0.414 0 23 hm5C_associated_SNPs_53784 0 0 0 0 2 SELENOV chr19:40009433 5'GT 40009433 Upstream 25bp
chr5 55110737 55110737 1 + A C BLCA 55110733 + 55110713 55110753 41 TTTCTTTTCTTTCAAGTGATCGGGAACAGAGAGAGCGGGAG TTTCTTTTCTTTCAAGTGATCGGGCACAGAGAGAGCGGGAG < 41bp 0.805538410053037 0.447430369519177 0.68469936 0.49242908 prediction 0.611076820106073 Functional Loss - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55110733 chr5:55110737 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_53785 0 0 0 0 1 DDX4 chr5:55110729 3'AG 55110729 Downstream 9bp
chr3 37038200 37038200 1 + G T STAD 37038197 + 37038177 37038217 41 CAAGACAATGGCACCGGGATCAGGGTAAGTAAAACCTCAAA CAAGACAATGGCACCGGGATCAGTGTAAGTAAAACCTCAAA < 41bp 0.819360588901587 0.513829811112792 0.903372 0.47908896 prediction 0.611061555577588 Functional Loss - MLH1 ENSG00000076242 CDS Human protein_coding chr3:37038197 chr3:37038200 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_53786 0 0 1 0 3 MLH1 chr3:37038110 3'AG 37038110 Downstream 91bp
chr3 37038200 37038200 1 + G T STAD 37038197 + 37038177 37038217 41 CAAGACAATGGCACCGGGATCAGGGTAAGTAAAACCTCAAA CAAGACAATGGCACCGGGATCAGTGTAAGTAAAACCTCAAA < 41bp 0.819360588901587 0.513829811112792 0.903372 0.47908896 prediction 0.611061555577588 Functional Loss - MLH1 ENSG00000076242 CDS Human protein_coding chr3:37038197 chr3:37038200 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_53786 0 0 1 0 3 MLH1 chr3:37038115 3'AG 37038115 Downstream 86bp
chr3 37038200 37038200 1 + G T STAD 37038197 + 37038177 37038217 41 CAAGACAATGGCACCGGGATCAGGGTAAGTAAAACCTCAAA CAAGACAATGGCACCGGGATCAGTGTAAGTAAAACCTCAAA < 41bp 0.819360588901587 0.513829811112792 0.903372 0.47908896 prediction 0.611061555577588 Functional Loss - MLH1 ENSG00000076242 CDS Human protein_coding chr3:37038197 chr3:37038200 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_53786 0 0 1 0 3 MLH1 chr3:37038200 3'AG 37038200 Downstream 1bp
chr12 72091248 72091248 1 + G T UCEC 72091246 + 72091226 72091266 41 TGCTGGAGACACATGGGCTTCAGAAGTTGGCCCAGTTCTGA TGCTGGAGACACATGGGCTTCATAAGTTGGCCCAGTTCTGA < 41bp 0.821433243152075 0.515902571596403 0.15417343 0.016851872 prediction 0.611061343111345 Functional Loss - TMEM19 ENSG00000139291 CDS Human protein_coding chr12:72091246 chr12:72091248 stopgain 0.999 1 23 hm5C_associated_SNPs_53787 0 0 0 0 1 TMEM19 chr12:72091314 5'GT 72091314 Upstream 67bp
chr2 26257601 26257601 1 + A T LUAD 26257597 + 26257577 26257617 41 TTCAATACTACCTTTATTTCCACCATAGGTAAGACCTGTGG TTCAATACTACCTTTATTTCCACCTTAGGTAAGACCTGTGG < 41bp 0.805503637077782 0.492983084762717 0.03295672 0.1367988 prediction 0.611007274155564 Functional Loss - RAB10 ENSG00000084733 CDS Human protein_coding chr2:26257597 chr2:26257601 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_53792 0 0 1 0 1 RAB10 chr2:26257604 5'GT 26257604 Upstream 4bp
chr12 53819521 53819521 1 + G T LGG 53819518 + 53819498 53819538 41 TGGTTTGGGCCGGGCAGCTGCAAGGAAAACTGGTTGCCATC TGGTTTGGGCCGGGCAGCTGCAATGAAAACTGGTTGCCATC < 41bp 0.805486163459126 0.41630374150452 0.90099525 0.36713952 prediction 0.610972326918252 Functional Loss - AMHR2 ENSG00000135409 CDS Human protein_coding chr12:53819518 chr12:53819521 stopgain 0.081 0 24 hm5C_associated_SNPs_53795 0 0 1 0 2 AMHR2 chr12:53819470 3'AG 53819470 Downstream 52bp
chr12 53819521 53819521 1 + G T LGG 53819518 + 53819498 53819538 41 TGGTTTGGGCCGGGCAGCTGCAAGGAAAACTGGTTGCCATC TGGTTTGGGCCGGGCAGCTGCAATGAAAACTGGTTGCCATC < 41bp 0.805486163459126 0.41630374150452 0.90099525 0.36713952 prediction 0.610972326918252 Functional Loss - AMHR2 ENSG00000135409 CDS Human protein_coding chr12:53819518 chr12:53819521 stopgain 0.081 0 24 hm5C_associated_SNPs_53795 0 0 1 0 2 AMHR2 chr12:53819473 3'AG 53819473 Downstream 49bp
chr19 10568686 10568686 1 + G T COAD 10568684 + 10568664 10568704 41 ACAGCCCATGTCCCAAATCACAGGGTTGAAAAAGTTGATGC ACAGCCCATGTCCCAAATCACATGGTTGAAAAAGTTGATGC < 41bp 0.805478215010145 0.476987746163172 0.94931513 0.77538633 prediction 0.610956430020289 Functional Loss - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10568684 chr19:10568686 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_53796 0 0 1 0 1 PDE4A chr19:10568778 5'GT 10568778 Upstream 93bp
chr22 45944519 45944519 1 + G T LUAD 45944517 + 45944497 45944537 41 CGACGAGTGCGCCCTGCCCACCGGGGGCCACATCTGCTCCT CGACGAGTGCGCCCTGCCCACCTGGGGCCACATCTGCTCCT < 41bp 0.805465328650995 0.458089318951197 0.92638206 0.1008445 prediction 0.61093065730199 Functional Loss - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45944517 chr22:45944519 nonsynonymous SNV 0.974 5 23 hm5C_associated_SNPs_53799 0 0 1 0 1 FBLN1 chr22:45944493 3'AG 45944493 Downstream 27bp
chr1 36788238 36788238 1 - C A rs542369630 36788241 - 36788221 36788261 41 TGCCTGCTCGTCATCAGCATCTCGTGGGCGCCCCGCCCGCG TGCCTGCTCGTCATCAGCATCTCTTGGGCGCCCCGCCCGCG < 41bp 0.805460104408543 0.445965967332599 0.13107988 0.046014637 prediction 0.610920208817086 Functional Loss - EVA1B ENSG00000142694 CDS Human protein_coding chr1:36788241 chr1:36788238 synonymous SNV . 0 24 hm5C_associated_SNPs_53801 0 0 1 0 1 EVA1B chr1:36788326 3'AG 36788326 Downstream 89bp
chr1 89846106 89846106 1 + G T UCEC 89846103 + 89846083 89846123 41 AGCAACTGGATCCCAAATTCCAGGAACAAACAAACATTTTC AGCAACTGGATCCCAAATTCCAGTAACAAACAAACATTTTC < 41bp 0.805415874786783 0.45238998299214 0.06108877 0.0738886 prediction 0.610831749573567 Functional Loss - GBP6 ENSG00000183347 CDS Human protein_coding chr1:89846103 chr1:89846106 stopgain 0.000 0 24 hm5C_associated_SNPs_53809 0 0 0 0 1 GBP6 chr1:89846190 5'GT 89846190 Upstream 85bp
chr19 36278580 36278580 1 + G T UCEC 36278578 + 36278558 36278598 41 GGCTTCTTCTCCCCAGCCCCCAGGGAGTGCCTGCCACCCTT GGCTTCTTCTCCCCAGCCCCCATGGAGTGCCTGCCACCCTT < 41bp 0.805395299985106 0.482236830264015 0.9389549 0.83445966 prediction 0.610790599970213 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36278578 chr19:36278580 nonsynonymous SNV 0.682 2 23 hm5C_associated_SNPs_53812 0 0 1 0 1 ARHGAP33 chr19:36278546 3'AG 36278546 Downstream 35bp
chr5 94001657 94001657 1 + G T UCEC 94001654 + 94001634 94001674 41 TTGGAAGTCTCCAGCCATGTCGAGATATTATTTAGAGTTGT TTGGAAGTCTCCAGCCATGTCGATATATTATTTAGAGTTGT < 41bp 0.805388115007475 0.452513232815401 0.60340035 0.08646172 prediction 0.61077623001495 Functional Loss - SLF1 ENSG00000133302 CDS Human protein_coding chr5:94001654 chr5:94001657 nonsynonymous SNV 0.829 1 24 hm5C_associated_SNPs_53813 0 0 0 0 2 SLF1 chr5:94001566 3'AG 94001566 Downstream 92bp
chr5 94001657 94001657 1 + G T UCEC 94001654 + 94001634 94001674 41 TTGGAAGTCTCCAGCCATGTCGAGATATTATTTAGAGTTGT TTGGAAGTCTCCAGCCATGTCGATATATTATTTAGAGTTGT < 41bp 0.805388115007475 0.452513232815401 0.60340035 0.08646172 prediction 0.61077623001495 Functional Loss - SLF1 ENSG00000133302 CDS Human protein_coding chr5:94001654 chr5:94001657 nonsynonymous SNV 0.829 1 24 hm5C_associated_SNPs_53813 0 0 0 0 2 SLF1 chr5:94001729 5'GT 94001729 Upstream 73bp
chr15 44048938 44048938 1 + G T BLCA 44048935 + 44048915 44048955 41 ATTTAGAGATGGTGAAGAAGCAGGTGCTTATGATGGACCTA ATTTAGAGATGGTGAAGAAGCAGTTGCTTATGATGGACCTA < 41bp 0.80536424616128 0.428567558434894 0.81589603 0.17976803 prediction 0.610728492322561 Functional Loss - PDIA3 ENSG00000167004 CDS Human protein_coding chr15:44048935 chr15:44048938 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_53815 0 0 1 0 2 PDIA3 chr15:44048847 3'AG 44048847 Downstream 92bp
chr15 44048938 44048938 1 + G T BLCA 44048935 + 44048915 44048955 41 ATTTAGAGATGGTGAAGAAGCAGGTGCTTATGATGGACCTA ATTTAGAGATGGTGAAGAAGCAGTTGCTTATGATGGACCTA < 41bp 0.80536424616128 0.428567558434894 0.81589603 0.17976803 prediction 0.610728492322561 Functional Loss - PDIA3 ENSG00000167004 CDS Human protein_coding chr15:44048935 chr15:44048938 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_53815 0 0 1 0 2 PDIA3 chr15:44048964 5'GT 44048964 Upstream 27bp
chr9 101767249 101767249 1 + G T BRCA 101767247 + 101767227 101767267 41 CGAGGCACTCGCCAGCATGCCTGGGGAAGTGGAGGCCAGTG CGAGGCACTCGCCAGCATGCCTTGGGAAGTGGAGGCCAGTG < 41bp 0.842467807329175 0.537112823810555 0.53111166 0.051158577 prediction 0.61070996703724 Functional Loss - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101767247 chr9:101767249 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_53817 0 0 0 0 1 COL15A1 chr9:101767332 5'GT 101767332 Upstream 84bp
chr3 9488989 9488989 1 + G T LGG 9488987 + 9488967 9489007 41 TACCCGGAGGTCTTCCCAAGCAGGGGTAAGAGTTGAAAAGA TACCCGGAGGTCTTCCCAAGCATGGGTAAGAGTTGAAAAGA < 41bp 0.805352163863105 0.483456584382345 0.93956536 0.5742194 prediction 0.61070432772621 Functional Loss - SETD5 ENSG00000168137 CDS Human protein_coding chr3:9488987 chr3:9488989 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_53818 0 0 1 0 1 SETD5 chr3:9488991 5'GT 9488991 Upstream 3bp
chr16 56928501 56928501 1 + G T LUAD 56928498 + 56928478 56928518 41 AAGAGGAGGTGGAGCAAATGCAAGATCCGTGTGTTCGTAGG AAGAGGAGGTGGAGCAAATGCAATATCCGTGTGTTCGTAGG < 41bp 0.880016543342223 0.574673256050405 0.857828 0.3380562 prediction 0.610686574583636 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56928498 chr16:56928501 nonsynonymous SNV 0.982 3 24 hm5C_associated_SNPs_53819 0 0 0 0 2 SLC12A3 chr16:56928443 3'AG 56928443 Downstream 59bp
chr16 56928501 56928501 1 + G T LUAD 56928498 + 56928478 56928518 41 AAGAGGAGGTGGAGCAAATGCAAGATCCGTGTGTTCGTAGG AAGAGGAGGTGGAGCAAATGCAATATCCGTGTGTTCGTAGG < 41bp 0.880016543342223 0.574673256050405 0.857828 0.3380562 prediction 0.610686574583636 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56928498 chr16:56928501 nonsynonymous SNV 0.982 3 24 hm5C_associated_SNPs_53819 0 0 0 0 2 SLC12A3 chr16:56928554 5'GT 56928554 Upstream 54bp
chr7 154862784 154862784 1 - C A OV 154862786 - 154862766 154862806 41 AGGATGGTCGCCAGCACCAGCAGGTTCCAGGCGAACGTCGC AGGATGGTCGCCAGCACCAGCATGTTCCAGGCGAACGTCGC < 41bp 0.805323463952182 0.475603657267234 0.901662 0.29225048 prediction 0.610646927904365 Functional Loss - HTR5A ENSG00000157219;ENSG00000220575 CDS Human other chr7:154862786 chr7:154862784 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_53821 0 0 0 0 1 HTR5A chr7:154862744 5'GT 154862744 Upstream 41bp
chr19 3730650 3730650 1 + G T LGG 3730647 + 3730627 3730667 41 GCTTTAAGCGGCTGCCACGGCAGGACGTGCAGATGAAGCCT GCTTTAAGCGGCTGCCACGGCAGTACGTGCAGATGAAGCCT < 41bp 0.887516973370576 0.582222729351693 0.4115132 0.16753504 prediction 0.610588488037766 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3730647 chr19:3730650 nonsynonymous SNV 0.197 3 24 hm5C_associated_SNPs_53825 0 0 0 0 1 TJP3 chr19:3730704 5'GT 3730704 Upstream 55bp
chr1 44595120 44595120 1 + G T PAAD 44595118 + 44595098 44595138 41 ACCAAGGCCTACCAAGCATTCAGCACTTTCCTCACAGCGCA ACCAAGGCCTACCAAGCATTCATCACTTTCCTCACAGCGCA < 41bp 0.843729438361429 0.538448290585919 0.17747718 0.1142858 prediction 0.61056229555102 Functional Loss - KLF17 ENSG00000171872 CDS Human protein_coding chr1:44595118 chr1:44595120 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_53828 0 0 0 0 1 KLF17 chr1:44595025 3'AG 44595025 Downstream 96bp
chr16 722297 722297 1 + G T SARC 722295 + 722275 722315 41 ACCAGGAGAAGGGACAGACGCAGCGGAGCGTCCTCCTGTGC ACCAGGAGAAGGGACAGACGCATCGGAGCGTCCTCCTGTGC < 41bp 0.84017998648599 0.534901738006634 0.834023 0.1404697 prediction 0.610556496958713 Functional Loss - RHOT2 ENSG00000140983 CDS Human protein_coding chr16:722295 chr16:722297 nonsynonymous SNV 0.491 1 23 hm5C_associated_SNPs_53829 0 0 1 0 2 RHOT2 chr16:722254 3'AG 722254 Downstream 44bp
chr16 722297 722297 1 + G T SARC 722295 + 722275 722315 41 ACCAGGAGAAGGGACAGACGCAGCGGAGCGTCCTCCTGTGC ACCAGGAGAAGGGACAGACGCATCGGAGCGTCCTCCTGTGC < 41bp 0.84017998648599 0.534901738006634 0.834023 0.1404697 prediction 0.610556496958713 Functional Loss - RHOT2 ENSG00000140983 CDS Human protein_coding chr16:722295 chr16:722297 nonsynonymous SNV 0.491 1 23 hm5C_associated_SNPs_53829 0 0 1 0 2 RHOT2 chr16:722384 5'GT 722384 Upstream 88bp
chr21 41151188 41151188 1 + G T LUSC 41151186 + 41151166 41151206 41 TGCCGCCGTCGTTGTTGTGGCTGCAACTGCTGCTGCCGTTG TGCCGCCGTCGTTGTTGTGGCTTCAACTGCTGCTGCCGTTG < 41bp 0.805254824914274 0.486166220692843 0.17514637 0.100988805 prediction 0.610509649828548 Functional Loss - IGSF5 ENSG00000183067 CDS Human protein_coding chr21:41151186 chr21:41151188 nonsynonymous SNV 0.012 0 23 hm5C_associated_SNPs_53830 0 0 0 0 1 IGSF5 chr21:41151232 5'GT 41151232 Upstream 45bp
chr2 157367401 157367401 1 + A C LUSC 157367397 + 157367377 157367417 41 TCCATGGTGGTGTGAGATATCTGCAGAAGGCCATCATGAAG TCCATGGTGGTGTGAGATATCTGCCGAAGGCCATCATGAAG < 41bp 0.898112732288968 0.592866207911466 0.18008658 0.15510672 prediction 0.610493048755003 Functional Loss - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157367397 chr2:157367401 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_53832 0 0 1 2 1 GPD2 chr2:157367432 5'GT 157367432 Upstream 32bp
chr19 18085084 18085084 1 + G T LUAD 18085081 + 18085061 18085101 41 GTGACGGAGACCGAGCTGTCCTGGGGGGTGTACACCAAGGT GTGACGGAGACCGAGCTGTCCTGTGGGGTGTACACCAAGGT < 41bp 0.805241190320662 0.442440272964587 0.6908065 0.21018362 prediction 0.610482380641324 Functional Loss - KCNN1 ENSG00000105642 CDS Human protein_coding chr19:18085081 chr19:18085084 nonsynonymous SNV 0.844 3 24 hm5C_associated_SNPs_53833 0 0 0 0 1 KCNN1 chr19:18085099 5'GT 18085099 Upstream 16bp
chr2 209308194 209308194 1 + G T HNSC 209308191 + 209308171 209308211 41 CTCACATAGGAGTAAAGGAGCTGGAGTCCCTAATAATGCAG CTCACATAGGAGTAAAGGAGCTGTAGTCCCTAATAATGCAG < 41bp 0.805240918183415 0.445215812834871 0.05650857 0.027958542 prediction 0.61048183636683 Functional Loss - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209308191 chr2:209308194 stopgain 0.575 0 24 hm5C_associated_SNPs_53834 0 0 0 0 1 PTH2R chr2:209308262 5'GT 209308262 Upstream 69bp
chr19 11145616 11145616 1 + G T UCEC 11145613 + 11145593 11145633 41 ATGGACCTGGACCGCAGGCGCGAGGAGGCCCGCAACCCCAA ATGGACCTGGACCGCAGGCGCGATGAGGCCCGCAACCCCAA < 41bp 0.805223742500988 0.448108489944171 0.89771414 0.48685926 prediction 0.610447485001976 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145613 chr19:11145616 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_53835 0 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 27bp
chr16 19451377 19451377 1 + G T LGG 19451375 + 19451355 19451395 41 ACCAACATGTCTGCCTACTACAGGAATAACTGGTCTGAGGA ACCAACATGTCTGCCTACTACATGAATAACTGGTCTGAGGA < 41bp 0.805217256137994 0.498857451802336 0.35039383 0.084822476 prediction 0.610434512275988 Functional Loss - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19451375 chr16:19451377 nonsynonymous SNV 0.027 1 23 hm5C_associated_SNPs_53836 0 0 0 0 1 TMC5 chr16:19451282 3'AG 19451282 Downstream 96bp
chr22 23487711 23487711 1 + G T rs139746925 23487708 + 23487688 23487728 41 GGCTCAGGCGGACCAGGCCGCGCGGAGCCCCAGCTTTCACA GGCTCAGGCGGACCAGGCCGCGCTGAGCCCCAGCTTTCACA < 41bp 0.805196350803249 0.4318933618385 0.8633976 0.30499208 prediction 0.610392701606497 Functional Loss - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23487708 chr22:23487711 synonymous SNV . 0 24 hm5C_associated_SNPs_53837 0 0 0 0 1 RAB36 chr22:23487738 5'GT 23487738 Upstream 28bp
chr7 80303351 80303351 1 + G T SARC 80303348 + 80303328 80303368 41 CATGTTCAGAAGTCAAGTAACTGGAAAAATAAACCTCCTTG CATGTTCAGAAGTCAAGTAACTGTAAAAATAAACCTCCTTG < 41bp 0.805193556102071 0.464903461564161 0.137106 0.06938386 prediction 0.610387112204142 Functional Loss - CD36 ENSG00000135218 CDS Human protein_coding chr7:80303348 chr7:80303351 nonsynonymous SNV 0.979 2 24 hm5C_associated_SNPs_53839 0 0 0 0 1 CD36 chr7:80303299 3'AG 80303299 Downstream 53bp
chr17 74464954 74464954 1 + G T STAD 74464951 + 74464931 74464971 41 AGTGAGTTTCGCTGCCTCACCCCGGAGGACGCTGTCAGCGC AGTGAGTTTCGCTGCCTCACCCCTGAGGACGCTGTCAGCGC < 41bp 0.805190648487074 0.419139539275441 0.24034083 0.08299601 prediction 0.610381296974147 Functional Loss - AANAT ENSG00000129673 CDS Human protein_coding chr17:74464951 chr17:74464954 synonymous SNV . 0 24 hm5C_associated_SNPs_53840 0 0 0 0 1 AANAT chr17:74464991 5'GT 74464991 Upstream 38bp
chr17 7533817 7533817 1 + G T UCEC 7533814 + 7533794 7533834 41 GTCATGACCTTTGACCTCACCAAGATCACAAAGTATGGGGT GTCATGACCTTTGACCTCACCAATATCACAAAGTATGGGGT < 41bp 0.805577546149301 0.500389735931641 0.04373175 0.01607576 prediction 0.610375620435322 Functional Loss - SHBG ENSG00000129214 CDS Human protein_coding chr17:7533814 chr17:7533817 nonsynonymous SNV 0.657 0 24 hm5C_associated_SNPs_53841 0 0 0 0 2 SHBG chr17:7533736 3'AG 7533736 Downstream 82bp
chr17 7533817 7533817 1 + G T UCEC 7533814 + 7533794 7533834 41 GTCATGACCTTTGACCTCACCAAGATCACAAAGTATGGGGT GTCATGACCTTTGACCTCACCAATATCACAAAGTATGGGGT < 41bp 0.805577546149301 0.500389735931641 0.04373175 0.01607576 prediction 0.610375620435322 Functional Loss - SHBG ENSG00000129214 CDS Human protein_coding chr17:7533814 chr17:7533817 nonsynonymous SNV 0.657 0 24 hm5C_associated_SNPs_53841 0 0 0 0 2 SHBG chr17:7533825 5'GT 7533825 Upstream 9bp
chr6 158492769 158492769 1 + G T UCEC 158492767 + 158492747 158492787 41 ACCTGACGGCCGGGCAGTCCCAGGTGAAGGAGCGGAATGAA ACCTGACGGCCGGGCAGTCCCATGTGAAGGAGCGGAATGAA < 41bp 0.82879825975069 0.523613556019239 0.87939644 0.2562168 prediction 0.610369407462902 Functional Loss - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158492767 chr6:158492769 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_53842 0 0 1 0 1 SYNJ2 chr6:158492826 5'GT 158492826 Upstream 58bp
chr16 2577778 2577778 1 + G T LUSC 2577776 + 2577756 2577796 41 CTTGCTCCCTCCTCCCAGGGCTGCACCTGGAGGGCCCCTTC CTTGCTCCCTCCTCCCAGGGCTTCACCTGGAGGGCCCCTTC < 41bp 0.805159238829874 0.486162755508664 0.2834053 0.21462885 prediction 0.610318477659748 Functional Loss - AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2577776 chr16:2577778 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_53846 0 0 1 0 1 AMDHD2 chr16:2577774 3'AG 2577774 Downstream 5bp
chrX 79279608 79279608 1 + G T UCEC 79279605 + 79279585 79279625 41 TCAAGGTGAAAGGGTTGGATCCAGGGAAGCAGTACCATGTG TCAAGGTGAAAGGGTTGGATCCATGGAAGCAGTACCATGTG < 41bp 0.805158054629677 0.424940121408229 0.90274435 0.26796556 prediction 0.610316109259354 Functional Loss - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79279605 chrX:79279608 nonsynonymous SNV 0.471 3 24 hm5C_associated_SNPs_53847 0 0 0 0 2 TBX22 chrX:79279562 3'AG 79279562 Downstream 47bp
chrX 79279608 79279608 1 + G T UCEC 79279605 + 79279585 79279625 41 TCAAGGTGAAAGGGTTGGATCCAGGGAAGCAGTACCATGTG TCAAGGTGAAAGGGTTGGATCCATGGAAGCAGTACCATGTG < 41bp 0.805158054629677 0.424940121408229 0.90274435 0.26796556 prediction 0.610316109259354 Functional Loss - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79279605 chrX:79279608 nonsynonymous SNV 0.471 3 24 hm5C_associated_SNPs_53847 0 0 0 0 2 TBX22 chrX:79279663 5'GT 79279663 Upstream 56bp
chr17 37901726 37901726 1 + G T LUSC 37901724 + 37901704 37901744 41 CATGGACTTCTCTGGCCATGCTGGGCGTGTCATTGAGAACC CATGGACTTCTCTGGCCATGCTTGGCGTGTCATTGAGAACC < 41bp 0.832807255883441 0.527672322684091 0.81643516 0.24749601 prediction 0.6102698663987 Functional Loss - GRB7 ENSG00000141738 CDS Human protein_coding chr17:37901724 chr17:37901726 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_53850 0 0 1 0 1 GRB7 chr17:37901675 3'AG 37901675 Downstream 52bp
chr1 167666425 167666425 1 + G T KIRC 167666422 + 167666402 167666442 41 TGTGGAGAACTTGGAGATTTCAGGGCGGTGGAGTCATCTCA TGTGGAGAACTTGGAGATTTCAGTGCGGTGGAGTCATCTCA < 41bp 0.890410889797631 0.585290254398806 0.9015397 0.6061763 prediction 0.610241270797649 Functional Loss - RCSD1 ENSG00000198771 CDS Human protein_coding chr1:167666422 chr1:167666425 nonsynonymous SNV 0.856 0 24 hm5C_associated_SNPs_53851 0 0 0 0 1 RCSD1 chr1:167666336 3'AG 167666336 Downstream 90bp
chr3 37458897 37458897 1 + G T LUAD 37458895 + 37458875 37458915 41 TTAACACATGGAATAATAAACAGAGGAAGGCGGGCTAATGC TTAACACATGGAATAATAAACATAGGAAGGCGGGCTAATGC < 41bp 0.805117503949064 0.492855388619667 0.9011163 0.40105453 prediction 0.610235007898128 Functional Loss - C3orf35 ENSG00000198590 CDS Human protein_coding chr3:37458895 chr3:37458897 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_53852 0 0 0 0 1 C3orf35 chr3:37458983 5'GT 37458983 Upstream 87bp
chr17 19285706 19285706 1 + G T HNSC 19285704 + 19285684 19285724 41 GGCCTGCCGCCCCCAGACGCCGGGGGAGCCCCTCAGTCTTC GGCCTGCCGCCCCCAGACGCCGTGGGAGCCCCTCAGTCTTC < 41bp 0.84483026235887 0.539748583094343 0.9290841 0.8022732 prediction 0.610163358529054 Functional Loss - MAPK7 ENSG00000166484 CDS Human protein_coding chr17:19285704 chr17:19285706 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_53854 0 0 0 0 1 MAPK7 chr17:19285779 5'GT 19285779 Upstream 74bp
chr2 85662864 85662864 1 + G T COAD 85662861 + 85662841 85662881 41 TCACCCTGGCAGTGCTTCTCCGAGGCCGGGTCTTCAACATT TCACCCTGGCAGTGCTTCTCCGATGCCGGGTCTTCAACATT < 41bp 0.805075371584014 0.42119307026711 0.9242404 0.7011263 prediction 0.610150743168028 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85662861 chr2:85662864 nonsynonymous SNV 0.527 4 24 hm5C_associated_SNPs_53855 0 0 0 3 3 SH2D6 chr2:85662789 3'AG 85662789 Downstream 76bp
chr2 85662864 85662864 1 + G T COAD 85662861 + 85662841 85662881 41 TCACCCTGGCAGTGCTTCTCCGAGGCCGGGTCTTCAACATT TCACCCTGGCAGTGCTTCTCCGATGCCGGGTCTTCAACATT < 41bp 0.805075371584014 0.42119307026711 0.9242404 0.7011263 prediction 0.610150743168028 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85662861 chr2:85662864 nonsynonymous SNV 0.527 4 24 hm5C_associated_SNPs_53855 0 0 0 3 3 SH2D6 chr2:85662939 5'GT 85662939 Upstream 76bp
chr2 85662864 85662864 1 + G T COAD 85662861 + 85662841 85662881 41 TCACCCTGGCAGTGCTTCTCCGAGGCCGGGTCTTCAACATT TCACCCTGGCAGTGCTTCTCCGATGCCGGGTCTTCAACATT < 41bp 0.805075371584014 0.42119307026711 0.9242404 0.7011263 prediction 0.610150743168028 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85662861 chr2:85662864 nonsynonymous SNV 0.527 4 24 hm5C_associated_SNPs_53855 0 0 0 3 3 SH2D6 chr2:85662947 5'GT 85662947 Upstream 84bp
chr4 17838849 17838849 1 + G T PRAD 17838847 + 17838827 17838867 41 ATGTTCTCTGGGCTTTTGGTCAGCAGCAGGATTCTTTCTCG ATGTTCTCTGGGCTTTTGGTCATCAGCAGGATTCTTTCTCG < 41bp 0.805073634058001 0.489838379503362 0.34475398 0.09217957 prediction 0.610147268116003 Functional Loss - NCAPG ENSG00000109805 CDS Human protein_coding chr4:17838847 chr4:17838849 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_53856 0 0 1 0 1 NCAPG chr4:17838782 3'AG 17838782 Downstream 68bp
chr5 145317770 145317770 1 + G T CESC 145317767 + 145317747 145317787 41 GGCTCCTTCCGCAGGCCTGGCACGATGACCTTGCAGGATGG GGCTCCTTCCGCAGGCCTGGCACTATGACCTTGCAGGATGG < 41bp 0.805061327987296 0.448513673620373 0.08308175 0.12898904 prediction 0.610122655974592 Functional Loss - SH3RF2 ENSG00000156463 CDS Human protein_coding chr5:145317767 chr5:145317770 synonymous SNV . 0 24 hm5C_associated_SNPs_53859 0 0 1 0 1 SH3RF2 chr5:145317869 5'GT 145317869 Upstream 100bp
chr16 21190853 21190853 1 + A C rs1063087 21190849 + 21190829 21190869 41 TCTGCCAGCCATGAAGTCTGCAGAATTCGAGGGGCTTTACC TCTGCCAGCCATGAAGTCTGCAGACTTCGAGGGGCTTTACC < 41bp 0.805053193589493 0.435300675999659 0.5225234 0.57434833 prediction 0.610106387178986 Functional Loss - TMEM159 ENSG00000011638 CDS Human protein_coding chr16:21190849 chr16:21190853 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_53860 0 0 0 1 1 TMEM159 chr16:21190796 3'AG 21190796 Downstream 58bp
chr1 147086365 147086365 1 + G T UCEC 147086363 + 147086343 147086383 41 CCACAGAGCCCACACCTGCTCAGAAGACTCCAGCCAAAGTG CCACAGAGCCCACACCTGCTCATAAGACTCCAGCCAAAGTG < 41bp 0.805036545574339 0.476863969990654 0.16270965 0.03918448 prediction 0.610073091148678 Functional Loss - BCL9 ENSG00000116128 CDS Human protein_coding chr1:147086363 chr1:147086365 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_53862 0 0 0 0 1 BCL9 chr1:147086415 5'GT 147086415 Upstream 51bp
chr18 61650839 61650839 1 + G T GBM 61650837 + 61650817 61650857 41 GATTTCAGAGGTACTGGATGCTGGGACAGTCGATCCCCTGA GATTTCAGAGGTACTGGATGCTTGGACAGTCGATCCCCTGA < 41bp 0.830244005178893 0.525227808158308 0.7620038 0.13478607 prediction 0.610032394041171 Functional Loss - SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61650837 chr18:61650839 nonsynonymous SNV 0.044 5 23 hm5C_associated_SNPs_53865 0 0 0 0 1 SERPINB8 chr18:61650813 3'AG 61650813 Downstream 27bp
chr12 104376697 104376697 1 + G T LUSC 104376695 + 104376675 104376715 41 GTGGAAAGGACCACGCCCGGCAGCAAAGATCTCTCCAGGTA GTGGAAAGGACCACGCCCGGCATCAAAGATCTCTCCAGGTA < 41bp 0.819274232468035 0.514266939011398 0.2744542 0.15240458 prediction 0.610014586913273 Functional Loss - TDG ENSG00000139372 CDS Human protein_coding chr12:104376695 chr12:104376697 nonsynonymous SNV 0.909 4 23 hm5C_associated_SNPs_53868 0 0 1 0 1 TDG chr12:104376712 5'GT 104376712 Upstream 16bp
chr20 31652345 31652345 1 + G T HNSC 31652343 + 31652323 31652363 41 TCTCCAACCAGTACATAGAACTGGACATCAACGTGAGTAAC TCTCCAACCAGTACATAGAACTTGACATCAACGTGAGTAAC < 41bp 0.804995055894263 0.48581309486196 0.4133781 0.1495862 prediction 0.609990111788526 Functional Loss - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31652343 chr20:31652345 synonymous SNV . 0 23 hm5C_associated_SNPs_53870 0 0 0 0 2 BPIFB3 chr20:31652263 3'AG 31652263 Downstream 83bp
chr20 31652345 31652345 1 + G T HNSC 31652343 + 31652323 31652363 41 TCTCCAACCAGTACATAGAACTGGACATCAACGTGAGTAAC TCTCCAACCAGTACATAGAACTTGACATCAACGTGAGTAAC < 41bp 0.804995055894263 0.48581309486196 0.4133781 0.1495862 prediction 0.609990111788526 Functional Loss - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31652343 chr20:31652345 synonymous SNV . 0 23 hm5C_associated_SNPs_53870 0 0 0 0 2 BPIFB3 chr20:31652354 5'GT 31652354 Upstream 10bp
chr20 47851569 47851569 1 + G T LUAD 47851567 + 47851547 47851587 41 TCCTCCTGGGGCTCATGGGGCTGCAGGTGGGTGAGCTCCAT TCCTCCTGGGGCTCATGGGGCTTCAGGTGGGTGAGCTCCAT < 41bp 0.804985934347569 0.495268312395199 0.5285608 0.42296302 prediction 0.609971868695139 Functional Loss - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47851567 chr20:47851569 synonymous SNV . 0 23 hm5C_associated_SNPs_53873 0 0 1 0 2 DDX27 chr20:47851472 3'AG 47851472 Downstream 98bp
chr20 47851569 47851569 1 + G T LUAD 47851567 + 47851547 47851587 41 TCCTCCTGGGGCTCATGGGGCTGCAGGTGGGTGAGCTCCAT TCCTCCTGGGGCTCATGGGGCTTCAGGTGGGTGAGCTCCAT < 41bp 0.804985934347569 0.495268312395199 0.5285608 0.42296302 prediction 0.609971868695139 Functional Loss - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47851567 chr20:47851569 synonymous SNV . 0 23 hm5C_associated_SNPs_53873 0 0 1 0 2 DDX27 chr20:47851625 5'GT 47851625 Upstream 57bp
chr4 166986864 166986864 1 + G T LUAD 166986861 + 166986841 166986881 41 AAATATGATTATGTGGAGATCTGGAGTGGTCTTTCCTCTGA AAATATGATTATGTGGAGATCTGTAGTGGTCTTTCCTCTGA < 41bp 0.804977583281686 0.453518865504566 0.5161909 0.2892313 prediction 0.609955166563372 Functional Loss - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166986861 chr4:166986864 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_53874 0 0 0 0 1 TLL1 chr4:166986835 3'AG 166986835 Downstream 30bp
chr1 159799720 159799720 1 + G T THCA 159799718 + 159799698 159799738 41 AAGTCGGGGGCTCGGTGCTGCTGGTGGCAGCGCGTCCCCCT AAGTCGGGGGCTCGGTGCTGCTTGTGGCAGCGCGTCCCCCT < 41bp 0.848868225570066 0.543893603497553 0.50831556 0.45642054 prediction 0.609949244145026 Functional Loss - SLAMF8 ENSG00000158714 CDS Human protein_coding chr1:159799718 chr1:159799720 synonymous SNV . 0 23 hm5C_associated_SNPs_53875 0 0 0 0 1 SLAMF8 chr1:159799656 3'AG 159799656 Downstream 65bp
chr1 206611390 206611390 1 + G T STAD 206611388 + 206611368 206611408 41 GTGTCCTGAAGCTTTACTTCCGGGGGCTGGAACACCCTCTC GTGTCCTGAAGCTTTACTTCCGTGGGCTGGAACACCCTCTC < 41bp 0.804946589731388 0.476113651746852 0.9454127 0.90589875 prediction 0.609893179462775 Functional Loss - SRGAP2 ENSG00000163486 CDS Human other chr1:206611388 chr1:206611390 synonymous SNV . 0 23 hm5C_associated_SNPs_53880 0 0 1 0 2 SRGAP2 chr1:206611314 3'AG 206611314 Downstream 77bp
chr1 206611390 206611390 1 + G T STAD 206611388 + 206611368 206611408 41 GTGTCCTGAAGCTTTACTTCCGGGGGCTGGAACACCCTCTC GTGTCCTGAAGCTTTACTTCCGTGGGCTGGAACACCCTCTC < 41bp 0.804946589731388 0.476113651746852 0.9454127 0.90589875 prediction 0.609893179462775 Functional Loss - SRGAP2 ENSG00000163486 CDS Human other chr1:206611388 chr1:206611390 synonymous SNV . 0 23 hm5C_associated_SNPs_53880 0 0 1 0 2 SRGAP2 chr1:206611448 5'GT 206611448 Upstream 59bp
chr22 36123159 36123159 1 + G T LUSC 36123157 + 36123137 36123177 41 ACCGGCTCACCCAGCACCACCGGCACCTGCCGCAGAAGGCG ACCGGCTCACCCAGCACCACCGTCACCTGCCGCAGAAGGCG < 41bp 0.804946131804223 0.485309964697805 0.41892797 0.1139856 prediction 0.609892263608447 Functional Loss - APOL5 ENSG00000128313 CDS Human protein_coding chr22:36123157 chr22:36123159 synonymous SNV . 0 23 hm5C_associated_SNPs_53881 0 0 0 0 1 APOL5 chr22:36123241 5'GT 36123241 Upstream 83bp
chr4 20599947 20599947 1 + G T LUSC 20599944 + 20599924 20599964 41 AAGGGTGACAAAGACCATATCGCGGTAGAACTCTATCGGGG AAGGGTGACAAAGACCATATCGCTGTAGAACTCTATCGGGG < 41bp 0.80491934900611 0.45285023615888 0.48472825 0.01754874 prediction 0.60983869801222 Functional Loss - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20599944 chr4:20599947 synonymous SNV . 0 24 hm5C_associated_SNPs_53883 0 0 1 0 2 SLIT2 chr4:20599888 3'AG 20599888 Downstream 60bp
chr4 20599947 20599947 1 + G T LUSC 20599944 + 20599924 20599964 41 AAGGGTGACAAAGACCATATCGCGGTAGAACTCTATCGGGG AAGGGTGACAAAGACCATATCGCTGTAGAACTCTATCGGGG < 41bp 0.80491934900611 0.45285023615888 0.48472825 0.01754874 prediction 0.60983869801222 Functional Loss - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20599944 chr4:20599947 synonymous SNV . 0 24 hm5C_associated_SNPs_53883 0 0 1 0 2 SLIT2 chr4:20600018 5'GT 20600018 Upstream 72bp
chr17 40935987 40935987 1 + G T UCEC 40935984 + 40935964 40936004 41 GCGGTTCCGGGAGATGAAGCCGCGGGTCCTTCAGCGCTGGA GCGGTTCCGGGAGATGAAGCCGCTGGTCCTTCAGCGCTGGA < 41bp 0.886500569759201 0.581585955411913 0.9221642 0.87240195 prediction 0.609829228694576 Functional Loss - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40935984 chr17:40935987 nonsynonymous SNV 0.945 2 24 hm5C_associated_SNPs_53886 0 0 1 0 1 WNK4 chr17:40935955 3'AG 40935955 Downstream 33bp
chr6 35754809 35754809 1 + G T SARC 35754807 + 35754787 35754827 41 TCTTGCATCCGGAACCAGGACTGCGAGACTGGCTGCTGCCA TCTTGCATCCGGAACCAGGACTTCGAGACTGGCTGCTGCCA < 41bp 0.834834803962765 0.529940253483021 0.2671219 0.14471152 prediction 0.609789100959488 Functional Loss - CLPSL1 ENSG00000204140 CDS Human protein_coding chr6:35754807 chr6:35754809 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_53889 0 0 0 0 2 CLPSL1 chr6:35754775 3'AG 35754775 Downstream 35bp
chr6 35754809 35754809 1 + G T SARC 35754807 + 35754787 35754827 41 TCTTGCATCCGGAACCAGGACTGCGAGACTGGCTGCTGCCA TCTTGCATCCGGAACCAGGACTTCGAGACTGGCTGCTGCCA < 41bp 0.834834803962765 0.529940253483021 0.2671219 0.14471152 prediction 0.609789100959488 Functional Loss - CLPSL1 ENSG00000204140 CDS Human protein_coding chr6:35754807 chr6:35754809 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_53889 0 0 0 0 2 CLPSL1 chr6:35754897 5'GT 35754897 Upstream 89bp
chr8 26441374 26441374 1 + G T LUAD 26441372 + 26441352 26441392 41 AAGACCATCGAGGCCCACTCCCGGATGGTGATCCCCGGAGG AAGACCATCGAGGCCCACTCCCTGATGGTGATCCCCGGAGG < 41bp 0.843817798637324 0.538929191001988 0.90340185 0.22443652 prediction 0.609777215270672 Functional Loss - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26441372 chr8:26441374 nonsynonymous SNV 0.985 2 23 hm5C_associated_SNPs_53890 0 0 1 0 1 DPYSL2 chr8:26441315 3'AG 26441315 Downstream 60bp
chr19 46198725 46198725 1 + G T LUAD 46198723 + 46198703 46198743 41 GGCCACGCTGCGGTCCCTGACAGCAGGTTGGCACGTGGAGC GGCCACGCTGCGGTCCCTGACATCAGGTTGGCACGTGGAGC < 41bp 0.843498799362797 0.538624494215781 0.36361998 0.15250933 prediction 0.609748610294033 Functional Loss - QPCTL ENSG00000011478 CDS Human protein_coding chr19:46198723 chr19:46198725 nonsynonymous SNV 0.628 1 23 hm5C_associated_SNPs_53892 0 0 1 0 1 QPCTL chr19:46198695 3'AG 46198695 Downstream 31bp
chr11 71847147 71847147 1 + A C LIHC 71847143 + 71847123 71847163 41 ACCACAAGACACAGCCCAGCCCCGAGGACGAGCTGTATGGC ACCACAAGACACAGCCCAGCCCCGCGGACGAGCTGTATGGC < 41bp 0.804858112865461 0.393015579332346 0.19188455 0.21644142 prediction 0.609716225730922 Functional Loss - FOLR3 ENSG00000110203 CDS Human protein_coding chr11:71847143 chr11:71847147 nonsynonymous SNV 0.028 3 25 hm5C_associated_SNPs_53894 0 0 0 0 1 FOLR3 chr11:71847166 5'GT 71847166 Upstream 20bp
chrX 69644935 69644935 1 + G T UCEC 69644933 + 69644913 69644953 41 CCCAGAGAGAGGATGCAAACCAGCAAGGTGGAGTAGGGATG CCCAGAGAGAGGATGCAAACCATCAAGGTGGAGTAGGGATG < 41bp 0.804848552528605 0.490786720258519 0.0862236 0.047833085 prediction 0.60969710505721 Functional Loss - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69644933 chrX:69644935 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_53895 0 0 0 0 1 GDPD2 chrX:69644939 5'GT 69644939 Upstream 5bp
chr8 66619324 66619324 1 + G T BLCA 66619322 + 66619302 66619342 41 CGCCCCTGCCTCCCCCTGCACTGGGGCTCCACCAAAGTACA CGCCCCTGCCTCCCCCTGCACTTGGGCTCCACCAAAGTACA < 41bp 0.851033875369892 0.546188806344429 0.11417198 0.019317895 prediction 0.609690138050926 Functional Loss - MTFR1 ENSG00000066855 CDS Human protein_coding chr8:66619322 chr8:66619324 synonymous SNV . 0 23 hm5C_associated_SNPs_53896 0 0 1 0 1 MTFR1 chr8:66619245 3'AG 66619245 Downstream 80bp
chr17 78082517 78082517 1 + G T LUAD 78082514 + 78082494 78082534 41 AGGACGTCCAGTGGAACGACCTGGACTACATGGACTCCCGG AGGACGTCCAGTGGAACGACCTGTACTACATGGACTCCCGG < 41bp 0.804842421020674 0.420355337855361 0.31587115 0.15717667 prediction 0.609684842041348 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78082514 chr17:78082517 nonsynonymous SNV 0.903 5 24 hm5C_associated_SNPs_53898 0 0 1 0 1 GAA chr17:78082496 3'AG 78082496 Downstream 22bp
chr15 63578791 63578791 1 + G T GBM 63578789 + 63578769 63578809 41 AGGTTTGAAGAGTATAAACCCAGGTGAGACAGCACCCTCTA AGGTTTGAAGAGTATAAACCCATGTGAGACAGCACCCTCTA < 41bp 0.829044924287225 0.524214553297407 0.94856 0.4268977 prediction 0.609660741979635 Functional Loss - APH1B ENSG00000138613 CDS Human protein_coding chr15:63578789 chr15:63578791 nonsynonymous SNV 0.905 2 23 hm5C_associated_SNPs_53899 0 0 0 0 2 APH1B chr15:63578757 3'AG 63578757 Downstream 35bp
chr15 63578791 63578791 1 + G T GBM 63578789 + 63578769 63578809 41 AGGTTTGAAGAGTATAAACCCAGGTGAGACAGCACCCTCTA AGGTTTGAAGAGTATAAACCCATGTGAGACAGCACCCTCTA < 41bp 0.829044924287225 0.524214553297407 0.94856 0.4268977 prediction 0.609660741979635 Functional Loss - APH1B ENSG00000138613 CDS Human protein_coding chr15:63578789 chr15:63578791 nonsynonymous SNV 0.905 2 23 hm5C_associated_SNPs_53899 0 0 0 0 2 APH1B chr15:63578827 5'GT 63578827 Upstream 37bp
chr3 16237290 16237290 1 + A C COAD 16237286 + 16237266 16237306 41 GGTGTCTGCAGCAGCACCCTCAGGACAGCCTGCCCACAGCC GGTGTCTGCAGCAGCACCCTCAGGCCAGCCTGCCCACAGCC < 41bp 0.888189839546217 0.583369364170352 0.9242533 0.91649866 prediction 0.609640950751729 Functional Loss - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16237286 chr3:16237290 nonsynonymous SNV 0.056 0 25 hm5C_associated_SNPs_53900 0 0 0 0 1 GALNT15 chr3:16237267 3'AG 16237267 Downstream 24bp
chr7 44152461 44152461 1 + G T SARC 44152459 + 44152439 44152479 41 TGCCAAGCCCAGGACTACACCGGCGGCATGGGCATCGTCAA TGCCAAGCCCAGGACTACACCGTCGGCATGGGCATCGTCAA < 41bp 0.827907555885105 0.523088279521078 0.9087425 0.18416429 prediction 0.609638552728054 Functional Loss - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44152459 chr7:44152461 nonsynonymous SNV 0.968 1 23 hm5C_associated_SNPs_53901 0 0 0 0 1 AEBP1 chr7:44152508 5'GT 44152508 Upstream 48bp
chr10 43869231 43869231 1 + G T UCEC 43869229 + 43869209 43869249 41 CCTGGCCCTTCTCCTACTGGCAGGTGAGTCCTCCCAGTCTC CCTGGCCCTTCTCCTACTGGCATGTGAGTCCTCCCAGTCTC < 41bp 0.827053773361596 0.522256769395391 0.89842105 0.45898417 prediction 0.609594007932411 Functional Loss - FXYD4 ENSG00000150201 CDS Human protein_coding chr10:43869229 chr10:43869231 nonsynonymous SNV 0.977 2 23 hm5C_associated_SNPs_53903 0 0 0 0 1 FXYD4 chr10:43869231 5'GT 43869231 Upstream 1bp
chr17 34172014 34172014 1 + G T KIRP 34172011 + 34171991 34172031 41 GTGGGGGCTACGGAGGAGACCGAGGTGGCTATGGAGGCAAA GTGGGGGCTACGGAGGAGACCGATGTGGCTATGGAGGCAAA < 41bp 0.876632068153188 0.571839724898413 0.9065416 0.21234015 prediction 0.609584686509549 Functional Loss - TAF15 ENSG00000172660 CDS Human other chr17:34172011 chr17:34172014 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_53904 0 0 1 0 1 TAF15 chr17:34172042 5'GT 34172042 Upstream 29bp
chr14 70235955 70235955 1 + G T UCEC 70235952 + 70235932 70235972 41 TATAGTTGAGAATTTATCCTCAAGAGTCAGCTGGCAGGTTT TATAGTTGAGAATTTATCCTCAATAGTCAGCTGGCAGGTTT < 41bp 0.804762340043983 0.452269899208342 0.4202258 0.061175227 prediction 0.609524680087967 Functional Loss - SRSF5 ENSG00000100650 CDS Human protein_coding chr14:70235952 chr14:70235955 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53905 0 0 1 1 2 SRSF5 chr14:70235899 3'AG 70235899 Downstream 57bp
chr14 70235955 70235955 1 + G T UCEC 70235952 + 70235932 70235972 41 TATAGTTGAGAATTTATCCTCAAGAGTCAGCTGGCAGGTTT TATAGTTGAGAATTTATCCTCAATAGTCAGCTGGCAGGTTT < 41bp 0.804762340043983 0.452269899208342 0.4202258 0.061175227 prediction 0.609524680087967 Functional Loss - SRSF5 ENSG00000100650 CDS Human protein_coding chr14:70235952 chr14:70235955 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53905 0 0 1 1 2 SRSF5 chr14:70235968 5'GT 70235968 Upstream 14bp
chr2 219292775 219292775 1 + G T LGG 219292772 + 219292752 219292792 41 AGGCTGCTGCATGTCAAGGGCAAGAGGAACGTGGTAGCTGG AGGCTGCTGCATGTCAAGGGCAATAGGAACGTGGTAGCTGG < 41bp 0.804758201475623 0.429049599708573 0.7476916 0.43334895 prediction 0.609516402951245 Functional Loss - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219292772 chr2:219292775 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53906 0 0 1 0 2 VIL1 chr2:219292688 3'AG 219292688 Downstream 88bp
chr2 219292775 219292775 1 + G T LGG 219292772 + 219292752 219292792 41 AGGCTGCTGCATGTCAAGGGCAAGAGGAACGTGGTAGCTGG AGGCTGCTGCATGTCAAGGGCAATAGGAACGTGGTAGCTGG < 41bp 0.804758201475623 0.429049599708573 0.7476916 0.43334895 prediction 0.609516402951245 Functional Loss - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219292772 chr2:219292775 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53906 0 0 1 0 2 VIL1 chr2:219292796 5'GT 219292796 Upstream 22bp
chr19 13059039 13059039 1 + G T SARC 13059037 + 13059017 13059057 41 ACCCCCAGAGGCCTCACCCACAGCTGCCCCAGAGTCCTCTA ACCCCCAGAGGCCTCACCCACATCTGCCCCAGAGTCCTCTA < 41bp 0.804744780367067 0.461273648148434 0.7555541 0.10031518 prediction 0.609489560734135 Functional Loss - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13059037 chr19:13059039 nonsynonymous SNV 0.906 0 23 hm5C_associated_SNPs_53908 0 0 0 0 1 RAD23A chr19:13058991 3'AG 13058991 Downstream 49bp
chr12 2910444 2910444 1 + G T PRAD 2910442 + 2910422 2910462 41 CCCAGCTGGCTGTGTGCCAGCAGCGGATCCGAAGGCAGCTT CCCAGCTGGCTGTGTGCCAGCATCGGATCCGAAGGCAGCTT < 41bp 0.839936671165039 0.535207745912373 0.8805414 0.287709 prediction 0.609457850505333 Functional Loss - FKBP4 ENSG00000004478 CDS Human protein_coding chr12:2910442 chr12:2910444 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_53911 0 0 1 0 1 FKBP4 chr12:2910522 5'GT 2910522 Upstream 79bp
chr6 50791125 50791125 1 + G T UCEC 50791123 + 50791103 50791143 41 CCTCTCTCCGCTCCCAGGACCGGCACGATGGTGTCCCGAGC CCTCTCTCCGCTCCCAGGACCGTCACGATGGTGTCCCGAGC < 41bp 0.804727922399628 0.473884123979432 0.6229036 0.21021667 prediction 0.609455844799257 Functional Loss - TFAP2B ENSG00000008196 CDS Human protein_coding chr6:50791123 chr6:50791125 synonymous SNV . 0 23 hm5C_associated_SNPs_53912 0 0 0 0 1 TFAP2B chr6:50791120 3'AG 50791120 Downstream 6bp
chr11 61545865 61545865 1 + G T GBM 61545863 + 61545843 61545883 41 TGCCCCCAGGTGTCATCGCTCAGGAGGTGAAGGAGATCTTG TGCCCCCAGGTGTCATCGCTCATGAGGTGAAGGAGATCTTG < 41bp 0.847443848252669 0.542724343620832 0.93242085 0.3984114 prediction 0.609439009263675 Functional Loss - MYRF ENSG00000124920 CDS Human protein_coding chr11:61545863 chr11:61545865 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_53914 0 0 1 0 2 MYRF chr11:61545852 3'AG 61545852 Downstream 14bp
chr11 61545865 61545865 1 + G T GBM 61545863 + 61545843 61545883 41 TGCCCCCAGGTGTCATCGCTCAGGAGGTGAAGGAGATCTTG TGCCCCCAGGTGTCATCGCTCATGAGGTGAAGGAGATCTTG < 41bp 0.847443848252669 0.542724343620832 0.93242085 0.3984114 prediction 0.609439009263675 Functional Loss - MYRF ENSG00000124920 CDS Human protein_coding chr11:61545863 chr11:61545865 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_53914 0 0 1 0 2 MYRF chr11:61545961 5'GT 61545961 Upstream 97bp
chr2 27282252 27282252 1 + G T UCEC 27282250 + 27282230 27282270 41 AGTACCCAAAAGGTCACCCACCGGGTGCTGGGCCCCGTCAG AGTACCCAAAAGGTCACCCACCTGGTGCTGGGCCCCGTCAG < 41bp 0.841075316422693 0.536378260459493 0.90747094 0.37358496 prediction 0.609394111926401 Functional Loss - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27282250 chr2:27282252 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_53917 0 0 1 0 1 AGBL5 chr2:27282272 5'GT 27282272 Upstream 21bp
chr20 43566815 43566815 1 + G T UCEC 43566813 + 43566793 43566833 41 GTTGCTCATGCTGGAGTCTCCAGAATCCCTCCATGCCAAGG GTTGCTCATGCTGGAGTCTCCATAATCCCTCCATGCCAAGG < 41bp 0.804693299025028 0.475517137233397 0.5000251 0.04267952 prediction 0.609386598050057 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43566813 chr20:43566815 stopgain 0.998 1 23 hm5C_associated_SNPs_53918 0 0 1 0 1 PABPC1L chr20:43566832 5'GT 43566832 Upstream 18bp
chr11 10615730 10615730 1 + G T COAD 10615727 + 10615707 10615747 41 GGGACATGGACCGTGCCGTGCGAGGGACCCCATCTTCTGCA GGGACATGGACCGTGCCGTGCGATGGACCCCATCTTCTGCA < 41bp 0.804681208492859 0.44274964960003 0.92597973 0.5250273 prediction 0.609362416985719 Functional Loss - MRVI1 ENSG00000072952 CDS Human antisense chr11:10615727 chr11:10615730 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_53920 0 0 0 0 2 MRVI1-AS1 chr11:10615664 3'AG 10615664 Downstream 67bp
chr11 10615730 10615730 1 + G T COAD 10615727 + 10615707 10615747 41 GGGACATGGACCGTGCCGTGCGAGGGACCCCATCTTCTGCA GGGACATGGACCGTGCCGTGCGATGGACCCCATCTTCTGCA < 41bp 0.804681208492859 0.44274964960003 0.92597973 0.5250273 prediction 0.609362416985719 Functional Loss - MRVI1 ENSG00000072952 CDS Human antisense chr11:10615727 chr11:10615730 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_53920 0 0 0 0 2 MRVI1-AS1 chr11:10615775 5'GT 10615775 Upstream 46bp
chrX 48678561 48678561 1 + G T HNSC 48678558 + 48678538 48678578 41 CAGCTGGCTTTGATGCTGCACGGGGGGATCCGCTGGGGGGC CAGCTGGCTTTGATGCTGCACGGTGGGATCCGCTGGGGGGC < 41bp 0.884056992571582 0.579388162789867 0.9128598 0.8551965 prediction 0.60933765956343 Functional Loss - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48678558 chrX:48678561 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_53924 0 0 1 0 1 HDAC6 chrX:48678513 3'AG 48678513 Downstream 49bp
chr2 27016114 27016114 1 + G T LUAD 27016111 + 27016091 27016131 41 CCAAAGGATGTGCAACTGGCCCGGAGGATCCGGGGCCTTGA CCAAAGGATGTGCAACTGGCCCGTAGGATCCGGGGCCTTGA < 41bp 0.876615240565821 0.571954869564062 0.46009743 0.050269514 prediction 0.609320742003517 Functional Loss - CENPA ENSG00000115163 CDS Human protein_coding chr2:27016111 chr2:27016114 synonymous SNV . 0 24 hm5C_associated_SNPs_53925 0 0 1 1 1 CENPA chr2:27016194 5'GT 27016194 Upstream 81bp
chr5 169506025 169506025 1 + G T LUAD 169506022 + 169506002 169506042 41 CCAAGACGCCGAGAGTGGAGCAGGAGGAACCGATCTCCCCG CCAAGACGCCGAGAGTGGAGCAGTAGGAACCGATCTCCCCG < 41bp 0.861583704980888 0.556945110597751 0.89749104 0.6533425 prediction 0.609277188766274 Functional Loss - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169506022 chr5:169506025 stopgain 0.638 0 24 hm5C_associated_SNPs_53926 0 0 1 0 1 DOCK2 chr5:169505979 3'AG 169505979 Downstream 47bp
chr15 52497116 52497116 1 - T G OV 52497120 - 52497100 52497140 41 TCTTGATCGGGGCGGTCACGCTGAACAGCCTCTTCCTGCGC TCTTGATCGGGGCGGTCACGCTGACCAGCCTCTTCCTGCGC < 41bp 0.804630359294864 0.412275630373796 0.23107368 0.22828957 prediction 0.609260718589728 Functional Loss - MYO5C ENSG00000128833 CDS Human protein_coding chr15:52497120 chr15:52497116 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_53927 0 0 1 0 1 MYO5C chr15:52497062 5'GT 52497062 Upstream 55bp
chr12 58120822 58120822 1 + G T SARC 58120820 + 58120800 58120840 41 GCCAGGTGGAGTGGGGAGCGCAGCTGTGGGTCCTCTACGCT GCCAGGTGGAGTGGGGAGCGCATCTGTGGGTCCTCTACGCT < 41bp 0.810238583262893 0.505630458878559 0.53921425 0.2951566 prediction 0.609216248768668 Functional Loss - AGAP2 ENSG00000135439;ENSG00000255737 CDS Human antisense chr12:58120820 chr12:58120822 nonsynonymous SNV 0.986 1 23 hm5C_associated_SNPs_53931 0 0 0 0 1 AGAP2-AS1 chr12:58120748 3'AG 58120748 Downstream 75bp
chr3 186450368 186450368 1 + G T HNSC 186450365 + 186450345 186450385 41 TACCCACCAACAGCCCAGAGCTGGAGGAGACACTGACTCAC TACCCACCAACAGCCCAGAGCTGTAGGAGACACTGACTCAC < 41bp 0.88743435782586 0.582858141704975 0.58001536 0.19360092 prediction 0.60915243224177 Functional Loss - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186450365 chr3:186450368 stopgain 0.742 0 24 hm5C_associated_SNPs_53933 0 0 0 0 2 KNG1 chr3:186450291 3'AG 186450291 Downstream 78bp
chr3 186450368 186450368 1 + G T HNSC 186450365 + 186450345 186450385 41 TACCCACCAACAGCCCAGAGCTGGAGGAGACACTGACTCAC TACCCACCAACAGCCCAGAGCTGTAGGAGACACTGACTCAC < 41bp 0.88743435782586 0.582858141704975 0.58001536 0.19360092 prediction 0.60915243224177 Functional Loss - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186450365 chr3:186450368 stopgain 0.742 0 24 hm5C_associated_SNPs_53933 0 0 0 0 2 KNG1 chr3:186450463 5'GT 186450463 Upstream 96bp
chr6 50682838 50682838 1 + G T BLCA 50682835 + 50682815 50682855 41 CCTCTTCCTTCCAGATACGTCACGACGGATCAAACAGCTAC CCTCTTCCTTCCAGATACGTCACTACGGATCAAACAGCTAC < 41bp 0.804569130052907 0.44819128098701 0.09987596 0.05512911 prediction 0.609138260105813 Functional Loss - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50682835 chr6:50682838 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53934 0 0 0 1 1 TFAP2D chr6:50682829 3'AG 50682829 Downstream 10bp
chrX 152113888 152113888 1 + G T CESC 152113885 + 152113865 152113905 41 GCAGGAGAGGCCTGGAGCTCCAAGAGGTGGCCAAGGAGACC GCAGGAGAGGCCTGGAGCTCCAATAGGTGGCCAAGGAGACC < 41bp 0.873262433474823 0.568697417095642 0.6602597 0.27317107 prediction 0.609130032758362 Functional Loss - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152113885 chrX:152113888 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_53935 0 0 0 0 1 ZNF185 chrX:152113811 3'AG 152113811 Downstream 78bp
chr9 131348125 131348125 1 + G T BLCA 131348122 + 131348102 131348142 41 CTTCCCAGCGTCGGCAGGACCTGGAGGACTCTCTGCAGGCC CTTCCCAGCGTCGGCAGGACCTGTAGGACTCTCTGCAGGCC < 41bp 0.804534520155431 0.462822549835788 0.42144138 0.11404383 prediction 0.609069040310862 Functional Loss - SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131348122 chr9:131348125 stopgain 0.999 1 24 hm5C_associated_SNPs_53938 0 0 1 0 1 SPTAN1 chr9:131348027 3'AG 131348027 Downstream 99bp
chr1 110584264 110584264 1 + G T BRCA 110584261 + 110584241 110584281 41 GGCAGACCTTCAGAGCCGAGCTGGGTAGGACCCTGGGGATC GGCAGACCTTCAGAGCCGAGCTGTGTAGGACCCTGGGGATC < 41bp 0.885700325073446 0.581171430609301 0.6475788 0.24513832 prediction 0.609057788928291 Functional Loss - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110584261 chr1:110584264 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_53940 0 0 1 0 1 STRIP1 chr1:110584264 5'GT 110584264 Upstream 1bp
chr14 76948393 76948393 1 + G T UCEC 76948391 + 76948371 76948411 41 ATCGAGTGCGTGGAGGCCGTCAGAAATACAAGCGACGGCTG ATCGAGTGCGTGGAGGCCGTCATAAATACAAGCGACGGCTG < 41bp 0.804522270936298 0.467746973210432 0.40796053 0.051314384 prediction 0.609044541872596 Functional Loss - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76948391 chr14:76948393 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_53941 0 0 1 0 2 ESRRB chr14:76948359 3'AG 76948359 Downstream 35bp
chr14 76948393 76948393 1 + G T UCEC 76948391 + 76948371 76948411 41 ATCGAGTGCGTGGAGGCCGTCAGAAATACAAGCGACGGCTG ATCGAGTGCGTGGAGGCCGTCATAAATACAAGCGACGGCTG < 41bp 0.804522270936298 0.467746973210432 0.40796053 0.051314384 prediction 0.609044541872596 Functional Loss - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76948391 chr14:76948393 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_53941 0 0 1 0 2 ESRRB chr14:76948469 5'GT 76948469 Upstream 77bp
chr22 25598726 25598726 1 + A C STAD 25598722 + 25598702 25598742 41 CCAGCCTGACCGACAGCCTGCTGGAGAAGGTGGGCTCCATC CCAGCCTGACCGACAGCCTGCTGGCGAAGGTGGGCTCCATC < 41bp 0.896198322135009 0.591680322729885 0.83254755 0.7023457 prediction 0.609035998810247 Functional Loss - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25598722 chr22:25598726 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_53942 0 0 0 0 2 CRYBB3 chr22:25598641 3'AG 25598641 Downstream 86bp
chr22 25598726 25598726 1 + A C STAD 25598722 + 25598702 25598742 41 CCAGCCTGACCGACAGCCTGCTGGAGAAGGTGGGCTCCATC CCAGCCTGACCGACAGCCTGCTGGCGAAGGTGGGCTCCATC < 41bp 0.896198322135009 0.591680322729885 0.83254755 0.7023457 prediction 0.609035998810247 Functional Loss - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25598722 chr22:25598726 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_53942 0 0 0 0 2 CRYBB3 chr22:25598759 5'GT 25598759 Upstream 34bp
chrX 85994808 85994808 1 + G T UCEC 85994805 + 85994785 85994825 41 TCTAGAAGAGAATCATCGTCCTGGGAGCCAGACCTCTTCCC TCTAGAAGAGAATCATCGTCCTGTGAGCCAGACCTCTTCCC < 41bp 0.823623847977223 0.519111075971486 0.72852266 0.20342568 prediction 0.609025544011475 Functional Loss - DACH2 ENSG00000126733 CDS Human protein_coding chrX:85994805 chrX:85994808 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_53943 0 0 0 0 2 DACH2 chrX:85994750 3'AG 85994750 Downstream 59bp
chrX 85994808 85994808 1 + G T UCEC 85994805 + 85994785 85994825 41 TCTAGAAGAGAATCATCGTCCTGGGAGCCAGACCTCTTCCC TCTAGAAGAGAATCATCGTCCTGTGAGCCAGACCTCTTCCC < 41bp 0.823623847977223 0.519111075971486 0.72852266 0.20342568 prediction 0.609025544011475 Functional Loss - DACH2 ENSG00000126733 CDS Human protein_coding chrX:85994805 chrX:85994808 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_53943 0 0 0 0 2 DACH2 chrX:85994885 5'GT 85994885 Upstream 78bp
chr12 81112714 81112714 1 + G T LUAD 81112712 + 81112692 81112732 41 AGTGGACCGGATCACCTCCTCAGAGCAACCTGGGTTGCCTC AGTGGACCGGATCACCTCCTCATAGCAACCTGGGTTGCCTC < 41bp 0.837795004222589 0.533284373038349 0.9020009 0.2223401 prediction 0.609021262368481 Functional Loss - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81112712 chr12:81112714 stopgain 0.980 1 23 hm5C_associated_SNPs_53944 0 0 0 0 1 MYF5 chr12:81112640 3'AG 81112640 Downstream 75bp
chrX 11130235 11130235 1 + G T SARC 11130233 + 11130213 11130253 41 AGTTCAGGCCTCAAATGCTTCAGCGTCCCCACCTTCAGGAT AGTTCAGGCCTCAAATGCTTCATCGTCCCCACCTTCAGGAT < 41bp 0.80449108033674 0.466876594653476 0.029274046 0.0018041432 prediction 0.60898216067348 Functional Loss - HCCS ENSG00000004961 CDS Human protein_coding chrX:11130233 chrX:11130235 nonsynonymous SNV 0.799 1 23 hm5C_associated_SNPs_53946 0 0 1 0 2 HCCS chrX:11130139 3'AG 11130139 Downstream 97bp
chrX 11130235 11130235 1 + G T SARC 11130233 + 11130213 11130253 41 AGTTCAGGCCTCAAATGCTTCAGCGTCCCCACCTTCAGGAT AGTTCAGGCCTCAAATGCTTCATCGTCCCCACCTTCAGGAT < 41bp 0.80449108033674 0.466876594653476 0.029274046 0.0018041432 prediction 0.60898216067348 Functional Loss - HCCS ENSG00000004961 CDS Human protein_coding chrX:11130233 chrX:11130235 nonsynonymous SNV 0.799 1 23 hm5C_associated_SNPs_53946 0 0 1 0 2 HCCS chrX:11130280 5'GT 11130280 Upstream 46bp
chr20 30363769 30363769 1 + G T UCEC 30363766 + 30363746 30363786 41 CGGAAAAAGAATGAAGAATTCAAGAAACTTGCTCTGGCTGG CGGAAAAAGAATGAAGAATTCAATAAACTTGCTCTGGCTGG < 41bp 0.877330479312518 0.572839770291259 0.8902061 0.40254933 prediction 0.608981418042518 Functional Loss - TPX2 ENSG00000088325 CDS Human protein_coding chr20:30363766 chr20:30363769 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_53947 0 0 1 0 2 TPX2 chr20:30363670 3'AG 30363670 Downstream 100bp
chr20 30363769 30363769 1 + G T UCEC 30363766 + 30363746 30363786 41 CGGAAAAAGAATGAAGAATTCAAGAAACTTGCTCTGGCTGG CGGAAAAAGAATGAAGAATTCAATAAACTTGCTCTGGCTGG < 41bp 0.877330479312518 0.572839770291259 0.8902061 0.40254933 prediction 0.608981418042518 Functional Loss - TPX2 ENSG00000088325 CDS Human protein_coding chr20:30363766 chr20:30363769 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_53947 0 0 1 0 2 TPX2 chr20:30363791 5'GT 30363791 Upstream 23bp
chr9 95797692 95797692 1 + G T LUSC 95797689 + 95797669 95797709 41 TGCCGGACCCTGAGGAGAGGCTGGACTCGGGGCATGTGTGG TGCCGGACCCTGAGGAGAGGCTGTACTCGGGGCATGTGTGG < 41bp 0.878862372794989 0.574395286269564 0.60407996 0.20571953 prediction 0.60893417305085 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95797689 chr9:95797692 nonsynonymous SNV 0.004 3 24 hm5C_associated_SNPs_53948 0 0 0 0 1 FGD3 chr9:95797620 3'AG 95797620 Downstream 73bp
chr3 101573504 101573504 1 + G T KIRC 101573501 + 101573481 101573521 41 AGATGAATGCACTTCACATGCTGGATATTAAAGAGCACAAT AGATGAATGCACTTCACATGCTGTATATTAAAGAGCACAAT < 41bp 0.87375844175744 0.569293759764455 0.25051373 0.13372415 prediction 0.60892936398597 Functional Loss - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101573501 chr3:101573504 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53949 0 0 1 0 2 NFKBIZ chr3:101573422 3'AG 101573422 Downstream 83bp
chr3 101573504 101573504 1 + G T KIRC 101573501 + 101573481 101573521 41 AGATGAATGCACTTCACATGCTGGATATTAAAGAGCACAAT AGATGAATGCACTTCACATGCTGTATATTAAAGAGCACAAT < 41bp 0.87375844175744 0.569293759764455 0.25051373 0.13372415 prediction 0.60892936398597 Functional Loss - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101573501 chr3:101573504 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53949 0 0 1 0 2 NFKBIZ chr3:101573527 5'GT 101573527 Upstream 24bp
chr11 57243707 57243707 1 + G T UCEC 57243705 + 57243685 57243725 41 GAACCGCCTGCGGCTGCTCACAGAGCACGTGTTTCGCGGCC GAACCGCCTGCGGCTGCTCACATAGCACGTGTTTCGCGGCC < 41bp 0.825326109127729 0.52087197421017 0.9376004 0.6959951 prediction 0.608908269835119 Functional Loss - RTN4RL2 ENSG00000186907 CDS Human protein_coding chr11:57243705 chr11:57243707 stopgain 1.000 1 23 hm5C_associated_SNPs_53952 0 0 0 0 1 RTN4RL2 chr11:57243635 3'AG 57243635 Downstream 73bp
chr9 35752016 35752016 1 + G T rs570195434 35752014 + 35751994 35752034 41 GTACCAGCGGCGACGTGGGGCAGGGGGTGTCCCCTCTGTGT GTACCAGCGGCGACGTGGGGCATGGGGTGTCCCCTCTGTGT < 41bp 0.8044443420301 0.472711497336396 0.9100909 0.52067596 prediction 0.6088886840602 Functional Loss - RGP1 ENSG00000107185 CDS Human protein_coding chr9:35752014 chr9:35752016 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_53953 0 0 0 0 1 RGP1 chr9:35751953 3'AG 35751953 Downstream 64bp
chr19 53077398 53077398 1 + G T CESC 53077396 + 53077376 53077416 41 GAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCTTCAGG GAAGAGGAAAGCAAAGGAGTCATGGATGGCTCTTCTTCAGG < 41bp 0.80443523476514 0.474231564844317 0.90811247 0.46615237 prediction 0.60887046953028 Functional Loss - ZNF701 ENSG00000167562 CDS Human protein_coding chr19:53077396 chr19:53077398 nonsynonymous SNV 0.087 3 23 hm5C_associated_SNPs_53954 0 0 0 0 2 ZNF701 chr19:53077330 3'AG 53077330 Downstream 69bp
chr19 53077398 53077398 1 + G T CESC 53077396 + 53077376 53077416 41 GAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCTTCAGG GAAGAGGAAAGCAAAGGAGTCATGGATGGCTCTTCTTCAGG < 41bp 0.80443523476514 0.474231564844317 0.90811247 0.46615237 prediction 0.60887046953028 Functional Loss - ZNF701 ENSG00000167562 CDS Human protein_coding chr19:53077396 chr19:53077398 nonsynonymous SNV 0.087 3 23 hm5C_associated_SNPs_53954 0 0 0 0 2 ZNF701 chr19:53077415 5'GT 53077415 Upstream 18bp
chr5 55111217 55111217 1 + G T UCEC 55111214 + 55111194 55111234 41 TCCTGGCTTCAGTGGTAGTACAAGAGGAAACGTGTTTGCAT TCCTGGCTTCAGTGGTAGTACAATAGGAAACGTGTTTGCAT < 41bp 0.804430801290431 0.457315291107434 0.63937503 0.22664493 prediction 0.608861602580862 Functional Loss - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55111214 chr5:55111217 nonsynonymous SNV 0.981 0 24 hm5C_associated_SNPs_53955 0 0 0 0 2 DDX4 chr5:55111141 3'AG 55111141 Downstream 77bp
chr5 55111217 55111217 1 + G T UCEC 55111214 + 55111194 55111234 41 TCCTGGCTTCAGTGGTAGTACAAGAGGAAACGTGTTTGCAT TCCTGGCTTCAGTGGTAGTACAATAGGAAACGTGTTTGCAT < 41bp 0.804430801290431 0.457315291107434 0.63937503 0.22664493 prediction 0.608861602580862 Functional Loss - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55111214 chr5:55111217 nonsynonymous SNV 0.981 0 24 hm5C_associated_SNPs_53955 0 0 0 0 2 DDX4 chr5:55111251 5'GT 55111251 Upstream 35bp
chr20 48558130 48558130 1 + A C UCEC 48558126 + 48558106 48558146 41 CTGCATGCCTGCAGGAATGTCTGAAGCCGAAGAAGCCTGTC CTGCATGCCTGCAGGAATGTCTGACGCCGAAGAAGCCTGTC < 41bp 0.899982199201536 0.595554404276941 0.3224747 0.15784752 prediction 0.608855589849191 Functional Loss - RNF114 ENSG00000124226 CDS Human protein_coding chr20:48558126 chr20:48558130 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_53956 0 0 1 0 2 RNF114 chr20:48558098 3'AG 48558098 Downstream 33bp
chr20 48558130 48558130 1 + A C UCEC 48558126 + 48558106 48558146 41 CTGCATGCCTGCAGGAATGTCTGAAGCCGAAGAAGCCTGTC CTGCATGCCTGCAGGAATGTCTGACGCCGAAGAAGCCTGTC < 41bp 0.899982199201536 0.595554404276941 0.3224747 0.15784752 prediction 0.608855589849191 Functional Loss - RNF114 ENSG00000124226 CDS Human protein_coding chr20:48558126 chr20:48558130 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_53956 0 0 1 0 2 RNF114 chr20:48558120 3'AG 48558120 Downstream 11bp
chr12 6647116 6647116 1 + G T BLCA 6647114 + 6647094 6647134 41 CCACTCCTCCACCTTTGACGCTGGGGCTGGCATTGCCCTCA CCACTCCTCCACCTTTGACGCTTGGGCTGGCATTGCCCTCA < 41bp 0.804417061191692 0.476620289783866 0.6947758 0.09224889 prediction 0.608834122383384 Functional Loss - GAPDH ENSG00000111640 CDS Human protein_coding chr12:6647114 chr12:6647116 nonsynonymous SNV 0.989 4 23 hm5C_associated_SNPs_53958 0 0 1 0 1 GAPDH chr12:6647162 5'GT 6647162 Upstream 47bp
chr20 62853305 62853305 1 + A C UCEC 62853301 + 62853281 62853321 41 AGCAGATGACCAGGAAGTGTCGGAAGAGAATTTTGAGGAGC AGCAGATGACCAGGAAGTGTCGGACGAGAATTTTGAGGAGC < 41bp 0.804414138547579 0.410671494582781 0.79193 0.7367064 prediction 0.608828277095157 Functional Loss - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62853301 chr20:62853305 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_53959 0 0 0 0 2 MYT1 chr20:62853246 3'AG 62853246 Downstream 60bp
chr20 62853305 62853305 1 + A C UCEC 62853301 + 62853281 62853321 41 AGCAGATGACCAGGAAGTGTCGGAAGAGAATTTTGAGGAGC AGCAGATGACCAGGAAGTGTCGGACGAGAATTTTGAGGAGC < 41bp 0.804414138547579 0.410671494582781 0.79193 0.7367064 prediction 0.608828277095157 Functional Loss - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62853301 chr20:62853305 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_53959 0 0 0 0 2 MYT1 chr20:62853400 5'GT 62853400 Upstream 96bp
chr17 45299181 45299181 1 + G T LUAD 45299178 + 45299158 45299198 41 TTTGACAAGGAGAGCAATGGCACGGTCATGGGTGCTGAGCT TTTGACAAGGAGAGCAATGGCACTGTCATGGGTGCTGAGCT < 41bp 0.888744810014635 0.584349319116269 0.7729732 0.40523577 prediction 0.608790981796733 Functional Loss - MYL4 ENSG00000198336 CDS Human protein_coding chr17:45299178 chr17:45299181 synonymous SNV . 0 24 hm5C_associated_SNPs_53960 0 0 1 0 1 MYL4 chr17:45299221 5'GT 45299221 Upstream 41bp
chr2 27659661 27659661 1 + G T LUSC 27659658 + 27659638 27659678 41 ACAATCATGTGAAGACTTGTCGAGAAGAGCAGAAGAATCTA ACAATCATGTGAAGACTTGTCGATAAGAGCAGAAGAATCTA < 41bp 0.874746221438486 0.570363624355893 0.12924826 0.07032579 prediction 0.608765194165185 Functional Loss - NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27659658 chr2:27659661 stopgain 1.000 1 24 hm5C_associated_SNPs_53962 0 0 1 0 2 NRBP1 chr2:27659620 3'AG 27659620 Downstream 42bp
chr2 27659661 27659661 1 + G T LUSC 27659658 + 27659638 27659678 41 ACAATCATGTGAAGACTTGTCGAGAAGAGCAGAAGAATCTA ACAATCATGTGAAGACTTGTCGATAAGAGCAGAAGAATCTA < 41bp 0.874746221438486 0.570363624355893 0.12924826 0.07032579 prediction 0.608765194165185 Functional Loss - NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27659658 chr2:27659661 stopgain 1.000 1 24 hm5C_associated_SNPs_53962 0 0 1 0 2 NRBP1 chr2:27659703 5'GT 27659703 Upstream 43bp
chr13 33629265 33629265 1 + G T UCEC 33629263 + 33629243 33629283 41 TTCGAGTGGCACAGAGGTTACAGCATCAGGCGTGGACTCTT TTCGAGTGGCACAGAGGTTACATCATCAGGCGTGGACTCTT < 41bp 0.804355290722769 0.480038932595603 0.0532282 0.017018408 prediction 0.608710581445538 Functional Loss - KL ENSG00000133116 CDS Human protein_coding chr13:33629263 chr13:33629265 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_53965 0 0 0 0 1 KL chr13:33629184 3'AG 33629184 Downstream 82bp
chr1 201839752 201839752 1 + G T LUSC 201839750 + 201839730 201839770 41 GGGCCTATGTGTCAGTGACCCTGGAACAAGTAGCCCAGTGG GGGCCTATGTGTCAGTGACCCTTGAACAAGTAGCCCAGTGG < 41bp 0.804334500939489 0.488146235071656 0.5515225 0.19143829 prediction 0.608669001878978 Functional Loss - IPO9 ENSG00000198700 CDS Human protein_coding chr1:201839750 chr1:201839752 synonymous SNV . 0 23 hm5C_associated_SNPs_53967 0 0 1 0 1 IPO9 chr1:201839711 3'AG 201839711 Downstream 42bp
chr16 3706754 3706754 1 + G T STAD 3706752 + 3706732 3706772 41 CAGGTTCTTCTCCCGGTTCACAGGTGGGTGCTGCCTGGGCC CAGGTTCTTCTCCCGGTTCACATGTGGGTGCTGCCTGGGCC < 41bp 0.848027322249483 0.543704444791143 0.9080499 0.6755292 prediction 0.608645754916681 Functional Loss - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3706752 chr16:3706754 stopgain 0.105 0 23 hm5C_associated_SNPs_53968 0 0 1 0 1 DNASE1 chr16:3706754 5'GT 3706754 Upstream 1bp
chr1 206319142 206319142 1 + G T UCEC 206319140 + 206319120 206319160 41 TCTCCATTGGCTCCCCACCACAGAACTTCACTGTCATCTTC TCTCCATTGGCTCCCCACCACATAACTTCACTGTCATCTTC < 41bp 0.844830231124777 0.540524316144099 0.29932988 0.1478554 prediction 0.608611829961356 Functional Loss - CTSE ENSG00000196188 CDS Human protein_coding chr1:206319140 chr1:206319142 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_53969 0 0 0 0 2 CTSE chr1:206319101 3'AG 206319101 Downstream 42bp
chr1 206319142 206319142 1 + G T UCEC 206319140 + 206319120 206319160 41 TCTCCATTGGCTCCCCACCACAGAACTTCACTGTCATCTTC TCTCCATTGGCTCCCCACCACATAACTTCACTGTCATCTTC < 41bp 0.844830231124777 0.540524316144099 0.29932988 0.1478554 prediction 0.608611829961356 Functional Loss - CTSE ENSG00000196188 CDS Human protein_coding chr1:206319140 chr1:206319142 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_53969 0 0 0 0 2 CTSE chr1:206319218 5'GT 206319218 Upstream 77bp
chr2 103414427 103414427 1 + A T LUAD 103414423 + 103414403 103414443 41 CCCCCTTCGCCAGCCATTTTCTCTACAAAGCTGGGGGAGGC CCCCCTTCGCCAGCCATTTTCTCTTCAAAGCTGGGGGAGGC < 41bp 0.834980442415587 0.530696092305622 0.8726683 0.2977789 prediction 0.60856870021993 Functional Loss - TMEM182 ENSG00000170417 CDS Human protein_coding chr2:103414423 chr2:103414427 nonsynonymous SNV 0.700 1 25 hm5C_associated_SNPs_53972 0 0 1 0 1 TMEM182 chr2:103414459 5'GT 103414459 Upstream 33bp
chr13 115057172 115057172 1 + G T BLCA 115057169 + 115057149 115057189 41 AGTTAGAAAAGAAACGTTTGCGGGAAGAGGAAAAAAGAAGA AGTTAGAAAAGAAACGTTTGCGGTAAGAGGAAAAAAGAAGA < 41bp 0.859913171117899 0.555628998941475 0.8491815 0.5825451 prediction 0.608568344352848 Functional Loss - UPF3A ENSG00000169062 CDS Human protein_coding chr13:115057169 chr13:115057172 stopgain 0.194 0 24 hm5C_associated_SNPs_53973 0 0 1 0 3 UPF3A chr13:115057080 3'AG 115057080 Downstream 93bp
chr13 115057172 115057172 1 + G T BLCA 115057169 + 115057149 115057189 41 AGTTAGAAAAGAAACGTTTGCGGGAAGAGGAAAAAAGAAGA AGTTAGAAAAGAAACGTTTGCGGTAAGAGGAAAAAAGAAGA < 41bp 0.859913171117899 0.555628998941475 0.8491815 0.5825451 prediction 0.608568344352848 Functional Loss - UPF3A ENSG00000169062 CDS Human protein_coding chr13:115057169 chr13:115057172 stopgain 0.194 0 24 hm5C_associated_SNPs_53973 0 0 1 0 3 UPF3A chr13:115057109 3'AG 115057109 Downstream 64bp
chr13 115057172 115057172 1 + G T BLCA 115057169 + 115057149 115057189 41 AGTTAGAAAAGAAACGTTTGCGGGAAGAGGAAAAAAGAAGA AGTTAGAAAAGAAACGTTTGCGGTAAGAGGAAAAAAGAAGA < 41bp 0.859913171117899 0.555628998941475 0.8491815 0.5825451 prediction 0.608568344352848 Functional Loss - UPF3A ENSG00000169062 CDS Human protein_coding chr13:115057169 chr13:115057172 stopgain 0.194 0 24 hm5C_associated_SNPs_53973 0 0 1 0 3 UPF3A chr13:115057267 5'GT 115057267 Upstream 96bp
chr11 249047 249047 1 + G T LUAD 249045 + 249025 249065 41 TTCCAGACTCTGAAGACTGCCTGGGGCCAGCAGGTAGGACT TTCCAGACTCTGAAGACTGCCTTGGGCCAGCAGGTAGGACT < 41bp 0.804275244207468 0.480094745359048 0.62305886 0.09254789 prediction 0.608550488414936 Functional Loss - PSMD13 ENSG00000185627 CDS Human protein_coding chr11:249045 chr11:249047 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_53974 0 0 1 0 1 PSMD13 chr11:249057 5'GT 249057 Upstream 11bp
chr12 113496256 113496256 1 + G T PRAD 113496254 + 113496234 113496274 41 GCACCAGTTTCGCCAGGACACAGGTGAGCAGACACCCACCC GCACCAGTTTCGCCAGGACACATGTGAGCAGACACCCACCC < 41bp 0.851327712072292 0.547054457136092 0.7281163 0.16174051 prediction 0.608546509872401 Functional Loss - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113496254 chr12:113496256 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_53975 0 0 0 0 1 DTX1 chr12:113496256 5'GT 113496256 Upstream 1bp
chr11 62505798 62505798 1 + G T GBM 62505796 + 62505776 62505816 41 GTACCTCCAGCTGACACAGTCAGAACTCAGCAGCTACCATA GTACCTCCAGCTGACACAGTCATAACTCAGCAGCTACCATA < 41bp 0.811231175237724 0.507008105235544 0.8239151 0.34113508 prediction 0.608446140004361 Functional Loss - TTC9C ENSG00000162222 CDS Human protein_coding chr11:62505796 chr11:62505798 stopgain 0.996 0 23 hm5C_associated_SNPs_53981 0 0 1 0 1 TTC9C chr11:62505760 3'AG 62505760 Downstream 39bp
chr8 106801059 106801059 1 + G T LUSC 106801057 + 106801037 106801077 41 TGCCAGTCAGATGACTCTCACAGAAGGGATGTACCCTGCAC TGCCAGTCAGATGACTCTCACATAAGGGATGTACCCTGCAC < 41bp 0.809734733749384 0.505512169955583 0.8243834 0.13305077 prediction 0.608445127587601 Functional Loss - ZFPM2 ENSG00000169946 CDS Human protein_coding chr8:106801057 chr8:106801059 stopgain 1.000 1 23 hm5C_associated_SNPs_53982 0 0 0 0 1 ZFPM2 chr8:106801152 5'GT 106801152 Upstream 94bp
chr6 47680153 47680153 1 + G T CESC 47680150 + 47680130 47680170 41 CATCTATACCTCTGCATATTCTAGACTTTCGAGCTCCAGAG CATCTATACCTCTGCATATTCTATACTTTCGAGCTCCAGAG < 41bp 0.878536550944506 0.574346370790041 0.24584717 0.118352026 prediction 0.60838036030893 Functional Loss - ADGRF4 ENSG00000153294 CDS Human protein_coding chr6:47680150 chr6:47680153 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_53984 0 0 0 0 1 ADGRF4 chr6:47680093 3'AG 47680093 Downstream 61bp
chr5 131670546 131670546 1 - C A rs272879 131670549 - 131670529 131670569 41 GCTATGATATAACGCCTGGGCAGGGTTCGCAATAGCAGCCA GCTATGATATAACGCCTGGGCAGTGTTCGCAATAGCAGCCA < 41bp 0.88664220030724 0.582495314485942 0.15272516 0.017550737 prediction 0.608293771642596 Functional Loss - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131670549 chr5:131670546 synonymous SNV . 0 24 hm5C_associated_SNPs_53985 0 0 0 0 2 SLC22A4 chr5:131670478 5'GT 131670478 Upstream 69bp
chr5 131670546 131670546 1 - C A rs272879 131670549 - 131670529 131670569 41 GCTATGATATAACGCCTGGGCAGGGTTCGCAATAGCAGCCA GCTATGATATAACGCCTGGGCAGTGTTCGCAATAGCAGCCA < 41bp 0.88664220030724 0.582495314485942 0.15272516 0.017550737 prediction 0.608293771642596 Functional Loss - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131670549 chr5:131670546 synonymous SNV . 0 24 hm5C_associated_SNPs_53985 0 0 0 0 2 SLC22A4 chr5:131670619 3'AG 131670619 Downstream 74bp
chr9 117400890 117400890 1 + G T PRAD 117400888 + 117400868 117400908 41 GACTGGGGTGAGCCCTGCAACAGCGGAGGGGCCTGAGAACT GACTGGGGTGAGCCCTGCAACATCGGAGGGGCCTGAGAACT < 41bp 0.841112716037896 0.536985700622852 0.8509767 0.8334255 prediction 0.608254030830088 Functional Loss - TMEM268 ENSG00000157693 CDS Human protein_coding chr9:117400888 chr9:117400890 nonsynonymous SNV 0.063 0 23 hm5C_associated_SNPs_53988 0 0 1 0 1 TMEM268 chr9:117400824 3'AG 117400824 Downstream 67bp
chr19 1220706 1220706 1 + G T LUAD 1220704 + 1220684 1220724 41 CAAGGTGGACATCTGGTCGGCTGGGGTCACCCTGTAAGTGC CAAGGTGGACATCTGGTCGGCTTGGGTCACCCTGTAAGTGC < 41bp 0.804109735248092 0.480827478882028 0.87501097 0.70037025 prediction 0.608219470496183 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1220704 chr19:1220706 nonsynonymous SNV 0.936 5 23 hm5C_associated_SNPs_53989 1 0 1 0 1 STK11 chr19:1220716 5'GT 1220716 Upstream 11bp
chr19 1220707 1220707 1 + G T LUAD 1220704 + 1220684 1220724 41 CAAGGTGGACATCTGGTCGGCTGGGGTCACCCTGTAAGTGC CAAGGTGGACATCTGGTCGGCTGTGGTCACCCTGTAAGTGC < 41bp 0.804109735248092 0.42764152104101 0.87501097 0.18995634 prediction 0.608219470496183 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1220704 chr19:1220707 nonsynonymous SNV 0.965 5 24 hm5C_associated_SNPs_53990 0 0 1 0 1 STK11 chr19:1220716 5'GT 1220716 Upstream 10bp
chr11 64876905 64876905 1 + G T LUSC 64876902 + 64876882 64876922 41 TGCTGCTCTCCCGCCTCTGCCTGGACTACGAGACGGCCACC TGCTGCTCTCCCGCCTCTGCCTGTACTACGAGACGGCCACC < 41bp 0.880322723355609 0.576253447495883 0.91711164 0.29946208 prediction 0.608138551719453 Functional Loss - VPS51 ENSG00000149823 CDS Human protein_coding chr11:64876902 chr11:64876905 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_53992 0 0 1 0 1 VPS51 chr11:64876967 5'GT 64876967 Upstream 63bp
chr18 72173173 72173173 1 + G T rs138391233 72173170 + 72173150 72173190 41 AAGAAGACCGTGTGCATTTACGGGCACCTGGATGTGCAGCC AAGAAGACCGTGTGCATTTACGGTCACCTGGATGTGCAGCC < 41bp 0.803995081800403 0.423400525689469 0.8880519 0.23318991 prediction 0.607990163600805 Functional Loss - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72173170 chr18:72173173 synonymous SNV . 0 24 hm5C_associated_SNPs_54000 0 0 1 0 2 CNDP2 chr18:72173084 3'AG 72173084 Downstream 90bp
chr18 72173173 72173173 1 + G T rs138391233 72173170 + 72173150 72173190 41 AAGAAGACCGTGTGCATTTACGGGCACCTGGATGTGCAGCC AAGAAGACCGTGTGCATTTACGGTCACCTGGATGTGCAGCC < 41bp 0.803995081800403 0.423400525689469 0.8880519 0.23318991 prediction 0.607990163600805 Functional Loss - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72173170 chr18:72173173 synonymous SNV . 0 24 hm5C_associated_SNPs_54000 0 0 1 0 2 CNDP2 chr18:72173246 5'GT 72173246 Upstream 74bp
chr20 31652609 31652609 1 + G T SARC 31652607 + 31652587 31652627 41 TCAACACCACGTTTGGACTCCTGCAGACCAACGGCGCCCTC TCAACACCACGTTTGGACTCCTTCAGACCAACGGCGCCCTC < 41bp 0.827251074843996 0.52327100257578 0.04208663 0.031801462 prediction 0.607960144536432 Functional Loss - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31652607 chr20:31652609 synonymous SNV . 0 23 hm5C_associated_SNPs_54003 0 0 0 0 1 BPIFB3 chr20:31652651 5'GT 31652651 Upstream 43bp
chr8 125035716 125035716 1 + G T LUSC 125035713 + 125035693 125035733 41 ACTATCCCTGACGTTTTCATCTGGATGCTCAGCAACAACAG ACTATCCCTGACGTTTTCATCTGTATGCTCAGCAACAACAG < 41bp 0.870965866068326 0.567021894028084 0.2574284 0.05256456 prediction 0.607887944080484 Functional Loss - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:125035713 chr8:125035716 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_54008 0 0 0 0 1 FER1L6 chr8:125035684 3'AG 125035684 Downstream 33bp
chr8 36780067 36780067 1 + G T UCEC 36780064 + 36780044 36780084 41 GTGGACTGGAAGGGTCCCTCCAAGAAACAAATCTGCATCTC GTGGACTGGAAGGGTCCCTCCAATAAACAAATCTGCATCTC < 41bp 0.803926801274647 0.434322366313119 0.28920716 0.056647927 prediction 0.607853602549295 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36780064 chr8:36780067 stopgain 0.059 0 24 hm5C_associated_SNPs_54012 0 0 0 0 2 KCNU1 chr8:36780008 3'AG 36780008 Downstream 60bp
chr8 36780067 36780067 1 + G T UCEC 36780064 + 36780044 36780084 41 GTGGACTGGAAGGGTCCCTCCAAGAAACAAATCTGCATCTC GTGGACTGGAAGGGTCCCTCCAATAAACAAATCTGCATCTC < 41bp 0.803926801274647 0.434322366313119 0.28920716 0.056647927 prediction 0.607853602549295 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36780064 chr8:36780067 stopgain 0.059 0 24 hm5C_associated_SNPs_54012 0 0 0 0 2 KCNU1 chr8:36780147 5'GT 36780147 Upstream 81bp
chr16 58286725 58286725 1 + G T UCEC 58286723 + 58286703 58286743 41 TCAGCGACCTCCACGATTATCAGAAATTAAAATATCAGCAG TCAGCGACCTCCACGATTATCATAAATTAAAATATCAGCAG < 41bp 0.836347009257808 0.532427652556277 0.83590955 0.25903317 prediction 0.607838713403063 Functional Loss - CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58286723 chr16:58286725 stopgain 0.093 0 23 hm5C_associated_SNPs_54013 0 0 0 0 2 CCDC113 chr16:58286631 3'AG 58286631 Downstream 95bp
chr16 58286725 58286725 1 + G T UCEC 58286723 + 58286703 58286743 41 TCAGCGACCTCCACGATTATCAGAAATTAAAATATCAGCAG TCAGCGACCTCCACGATTATCATAAATTAAAATATCAGCAG < 41bp 0.836347009257808 0.532427652556277 0.83590955 0.25903317 prediction 0.607838713403063 Functional Loss - CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58286723 chr16:58286725 stopgain 0.093 0 23 hm5C_associated_SNPs_54013 0 0 0 0 2 CCDC113 chr16:58286757 5'GT 58286757 Upstream 33bp
chr2 95944476 95944476 1 + G T UCEC 95944474 + 95944454 95944494 41 ACTTGGTTCCTGCAGGAGAACAGCACCTTCAACGCCCTTCC ACTTGGTTCCTGCAGGAGAACATCACCTTCAACGCCCTTCC < 41bp 0.803895867961162 0.471188398572487 0.86320525 0.21069425 prediction 0.607791735922324 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95944474 chr2:95944476 nonsynonymous SNV 0.566 0 23 hm5C_associated_SNPs_54017 0 0 0 0 2 PROM2 chr2:95944469 3'AG 95944469 Downstream 8bp
chr2 95944476 95944476 1 + G T UCEC 95944474 + 95944454 95944494 41 ACTTGGTTCCTGCAGGAGAACAGCACCTTCAACGCCCTTCC ACTTGGTTCCTGCAGGAGAACATCACCTTCAACGCCCTTCC < 41bp 0.803895867961162 0.471188398572487 0.86320525 0.21069425 prediction 0.607791735922324 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95944474 chr2:95944476 nonsynonymous SNV 0.566 0 23 hm5C_associated_SNPs_54017 0 0 0 0 2 PROM2 chr2:95944532 5'GT 95944532 Upstream 57bp
chr7 65553849 65553849 1 + G T UCEC 65553846 + 65553826 65553866 41 ACCCATCTCAGCAGGATGGCCGAGGACCTCATCCTCTACTG ACCCATCTCAGCAGGATGGCCGATGACCTCATCCTCTACTG < 41bp 0.803895789191067 0.41679251667064 0.4670319 0.12880862 prediction 0.607791578382135 Functional Loss - ASL ENSG00000126522;ENSG00000249319 CDS Human other chr7:65553846 chr7:65553849 nonsynonymous SNV 0.989 5 24 hm5C_associated_SNPs_54018 0 0 1 0 2 ASL chr7:65553794 3'AG 65553794 Downstream 56bp
chr7 65553849 65553849 1 + G T UCEC 65553846 + 65553826 65553866 41 ACCCATCTCAGCAGGATGGCCGAGGACCTCATCCTCTACTG ACCCATCTCAGCAGGATGGCCGATGACCTCATCCTCTACTG < 41bp 0.803895789191067 0.41679251667064 0.4670319 0.12880862 prediction 0.607791578382135 Functional Loss - ASL ENSG00000126522;ENSG00000249319 CDS Human other chr7:65553846 chr7:65553849 nonsynonymous SNV 0.989 5 24 hm5C_associated_SNPs_54018 0 0 1 0 2 ASL chr7:65553908 5'GT 65553908 Upstream 60bp
chr20 60503462 60503462 1 + G T LUSC 60503459 + 60503439 60503479 41 CCGGCGGCCGTGCGGAAGAACTGGACCATCACCCGCCTGAA CCGGCGGCCGTGCGGAAGAACTGTACCATCACCCGCCTGAA < 41bp 0.803894325689028 0.468897084728044 0.8975998 0.2965743 prediction 0.607788651378057 Functional Loss - CDH4 ENSG00000179242 CDS Human protein_coding chr20:60503459 chr20:60503462 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_54019 0 0 0 0 1 CDH4 chr20:60503481 5'GT 60503481 Upstream 20bp
chr12 133758594 133758594 1 + G T UCEC 133758592 + 133758572 133758612 41 CTGACCGTAGGGATGGCCACCAGGGTCCGGACAGCTTCTAT CTGACCGTAGGGATGGCCACCATGGTCCGGACAGCTTCTAT < 41bp 0.804490107485118 0.500603354583717 0.4837222 0.028515667 prediction 0.607773505802802 Functional Loss - ZNF268 ENSG00000090612;ENSG00000256825 CDS Human other chr12:133758592 chr12:133758594 nonsynonymous SNV 0.774 1 23 hm5C_associated_SNPs_54020 0 0 1 0 2 ZNF268 chr12:133758532 3'AG 133758532 Downstream 63bp
chr12 133758594 133758594 1 + G T UCEC 133758592 + 133758572 133758612 41 CTGACCGTAGGGATGGCCACCAGGGTCCGGACAGCTTCTAT CTGACCGTAGGGATGGCCACCATGGTCCGGACAGCTTCTAT < 41bp 0.804490107485118 0.500603354583717 0.4837222 0.028515667 prediction 0.607773505802802 Functional Loss - ZNF268 ENSG00000090612;ENSG00000256825 CDS Human other chr12:133758592 chr12:133758594 nonsynonymous SNV 0.774 1 23 hm5C_associated_SNPs_54020 0 0 1 0 2 ZNF268 chr12:133758616 5'GT 133758616 Upstream 23bp
chr1 74957883 74957883 1 + G T LUAD 74957881 + 74957861 74957901 41 ACCTGGCCGGAGTCATGTGGCAGCATTAAGAAGTCGTTTCG ACCTGGCCGGAGTCATGTGGCATCATTAAGAAGTCGTTTCG < 41bp 0.803885155337006 0.495125682558244 0.86335576 0.7842586 prediction 0.607770310674012 Functional Loss - FPGT-TNNI3K;TNNI3K ENSG00000116783;ENSG00000259030 CDS Human other chr1:74957881 chr1:74957883 nonsynonymous SNV 0.880 2 23 hm5C_associated_SNPs_54021 0 0 0 0 1 FPGT-TNNI3K;TNNI3K chr1:74957950 5'GT 74957950 Upstream 68bp
chr6 130415512 130415512 1 + G T UCEC 130415510 + 130415490 130415530 41 GCGAGACATCTGGGCCCTCACAGGTATGTGGTAGCTGTCAC GCGAGACATCTGGGCCCTCACATGTATGTGGTAGCTGTCAC < 41bp 0.828973027931361 0.525098290323088 0.74433327 0.41739464 prediction 0.607749475216546 Functional Loss - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130415510 chr6:130415512 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_54022 0 0 1 0 1 L3MBTL3 chr6:130415512 5'GT 130415512 Upstream 1bp
chr3 44672589 44672589 1 + G T UCEC 44672586 + 44672566 44672606 41 GTCAAGGATCAGGACACTCTCCAGAAGGTGGTGAGTGCCCC GTCAAGGATCAGGACACTCTCCATAAGGTGGTGAGTGCCCC < 41bp 0.803873197185067 0.437474544907827 0.3159969 0.050548494 prediction 0.607746394370134 Functional Loss - ZNF197;ZNF660-ZNF197 ENSG00000186448 CDS Human protein_coding chr3:44672586 chr3:44672589 nonsynonymous SNV 0.028 2 24 hm5C_associated_SNPs_54024 0 0 1 0 1 ZNF197;ZNF660-ZNF197 chr3:44672554 3'AG 44672554 Downstream 36bp
chrX 36122647 36122647 1 + G T HNSC 36122645 + 36122625 36122665 41 CTATCCCGTGTAGTGCCATACTGCAGCAATAATATGCCCCC CTATCCCGTGTAGTGCCATACTTCAGCAATAATATGCCCCC < 41bp 0.803859749422772 0.491407089191062 0.16250622 0.040121853 prediction 0.607719498845545 Functional Loss - CFAP47 ENSG00000176034 CDS Human other chrX:36122645 chrX:36122647 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_54026 0 0 0 0 1 CFAP47 chrX:36122616 3'AG 36122616 Downstream 32bp
chrX 152034470 152034470 1 + G T UCEC 152034467 + 152034447 152034487 41 CAGTTGGTACCCATCCTCATCGAGGCAGCCAGGAACGGCAA CAGTTGGTACCCATCCTCATCGATGCAGCCAGGAACGGCAA < 41bp 0.887492255734414 0.583634248711831 0.9075552 0.22604352 prediction 0.607716014045167 Functional Loss - NSDHL ENSG00000147383 CDS Human protein_coding chrX:152034467 chrX:152034470 nonsynonymous SNV 0.290 1 24 hm5C_associated_SNPs_54027 0 0 1 0 1 NSDHL chrX:152034505 5'GT 152034505 Upstream 36bp
chr1 117605061 117605061 1 + G T LUAD 117605058 + 117605038 117605078 41 AGGACTTTGTGGTAGAGCTTCAGGGTTTGCTTCTGCCACAG AGGACTTTGTGGTAGAGCTTCAGTGTTTGCTTCTGCCACAG < 41bp 0.885310566560297 0.5814732804797 0.9190078 0.42612314 prediction 0.607674572161193 Functional Loss - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117605058 chr1:117605061 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_54030 0 0 1 0 2 TTF2 chr1:117605009 3'AG 117605009 Downstream 53bp
chr1 117605061 117605061 1 + G T LUAD 117605058 + 117605038 117605078 41 AGGACTTTGTGGTAGAGCTTCAGGGTTTGCTTCTGCCACAG AGGACTTTGTGGTAGAGCTTCAGTGTTTGCTTCTGCCACAG < 41bp 0.885310566560297 0.5814732804797 0.9190078 0.42612314 prediction 0.607674572161193 Functional Loss - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117605058 chr1:117605061 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_54030 0 0 1 0 2 TTF2 chr1:117605095 5'GT 117605095 Upstream 35bp
chr13 34395333 34395333 1 + G T UCEC 34395330 + 34395310 34395350 41 ATCAGGTGCTGGAAAAAAGACAAGAATTATGTGTATTCTAC ATCAGGTGCTGGAAAAAAGACAATAATTATGTGTATTCTAC < 41bp 0.803804798414786 0.460972568062621 0.21500993 0.3232689 prediction 0.607609596829572 Functional Loss - RFC3 ENSG00000133119 CDS Human protein_coding chr13:34395330 chr13:34395333 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54032 0 0 1 0 2 RFC3 chr13:34395269 3'AG 34395269 Downstream 65bp
chr13 34395333 34395333 1 + G T UCEC 34395330 + 34395310 34395350 41 ATCAGGTGCTGGAAAAAAGACAAGAATTATGTGTATTCTAC ATCAGGTGCTGGAAAAAAGACAATAATTATGTGTATTCTAC < 41bp 0.803804798414786 0.460972568062621 0.21500993 0.3232689 prediction 0.607609596829572 Functional Loss - RFC3 ENSG00000133119 CDS Human protein_coding chr13:34395330 chr13:34395333 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54032 0 0 1 0 2 RFC3 chr13:34395406 5'GT 34395406 Upstream 74bp
chr14 100992335 100992335 1 + G T CESC 100992332 + 100992312 100992352 41 GCTGACCGCACCATTATTGCCTGGGATTTCCGGACCTCTGC GCTGACCGCACCATTATTGCCTGTGATTTCCGGACCTCTGC < 41bp 0.885217168456481 0.581419048177769 0.8883626 0.3636381 prediction 0.607596240557424 Functional Loss - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100992332 chr14:100992335 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54033 0 0 0 0 1 WDR25 chr14:100992377 5'GT 100992377 Upstream 43bp
chr12 49691311 49691311 1 + G T PAAD 49691308 + 49691288 49691328 41 TCCTCAACGTCAAGATGGCCCTGGACATCGAGATCGCCACC TCCTCAACGTCAAGATGGCCCTGTACATCGAGATCGCCACC < 41bp 0.878880025703996 0.575099898036606 0.28489548 0.121076286 prediction 0.607560255334779 Functional Loss - PRPH ENSG00000135406 CDS Human protein_coding chr12:49691308 chr12:49691311 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_54036 0 0 0 0 1 PRPH chr12:49691360 5'GT 49691360 Upstream 50bp
chr3 51981818 51981818 1 + G T STAD 51981815 + 51981795 51981835 41 TGTTCCTGGGTGAGGTGGCCCTGGGCAGAGAGCACCATATC TGTTCCTGGGTGAGGTGGCCCTGTGCAGAGAGCACCATATC < 41bp 0.885110719688402 0.581353655991955 0.48110947 0.24448866 prediction 0.607514127392893 Functional Loss - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51981815 chr3:51981818 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_54037 0 0 0 0 2 PARP3 chr3:51981756 3'AG 51981756 Downstream 63bp
chr3 51981818 51981818 1 + G T STAD 51981815 + 51981795 51981835 41 TGTTCCTGGGTGAGGTGGCCCTGGGCAGAGAGCACCATATC TGTTCCTGGGTGAGGTGGCCCTGTGCAGAGAGCACCATATC < 41bp 0.885110719688402 0.581353655991955 0.48110947 0.24448866 prediction 0.607514127392893 Functional Loss - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51981815 chr3:51981818 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_54037 0 0 0 0 2 PARP3 chr3:51981911 5'GT 51981911 Upstream 94bp
chr19 14038829 14038829 1 + G T rs56359259 14038827 + 14038807 14038847 41 GCTGGTCATTGACCCTGTGCCGGCAGCTGTGCCCACAGTGA GCTGGTCATTGACCCTGTGCCGTCAGCTGTGCCCACAGTGA < 41bp 0.817916048573849 0.514160701232212 0.8132782 0.25692213 prediction 0.607510694683275 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14038827 chr19:14038829 nonsynonymous SNV 0.242 0 23 hm5C_associated_SNPs_54039 2 0 1 0 1 CC2D1A chr19:14038843 5'GT 14038843 Upstream 15bp
chr22 38046695 38046695 1 - C A rs12170939 38046697 - 38046677 38046717 41 GCTGAAGCCAAGGCTGGGGCCGGAGCTGGAGCTGGAGCCGG GCTGAAGCCAAGGCTGGGGCCGTAGCTGGAGCTGGAGCCGG < 41bp 0.831348775060859 0.52759954917717 0.9053447 0.8530403 prediction 0.607498451767378 Functional Loss - SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38046697 chr22:38046695 nonsynonymous SNV 0.024 1 23 hm5C_associated_SNPs_54041 0 0 0 0 1 SH3BP1 chr22:38046719 3'AG 38046719 Downstream 25bp
chr1 207872577 207872577 1 + G T ESCA 207872575 + 207872555 207872595 41 TGCTAGTTACTGTGTTTTGGCTGGAATGGAAAGCCTTTGGA TGCTAGTTACTGTGTTTTGGCTTGAATGGAAAGCCTTTGGA < 41bp 0.810035628701307 0.506331600140585 0.12032637 0.04050061 prediction 0.607408057121445 Functional Loss - CR1L ENSG00000197721 CDS Human protein_coding chr1:207872575 chr1:207872577 stopgain 0.011 0 23 hm5C_associated_SNPs_54044 0 0 1 0 2 CR1L chr1:207872534 3'AG 207872534 Downstream 44bp
chr1 207872577 207872577 1 + G T ESCA 207872575 + 207872555 207872595 41 TGCTAGTTACTGTGTTTTGGCTGGAATGGAAAGCCTTTGGA TGCTAGTTACTGTGTTTTGGCTTGAATGGAAAGCCTTTGGA < 41bp 0.810035628701307 0.506331600140585 0.12032637 0.04050061 prediction 0.607408057121445 Functional Loss - CR1L ENSG00000197721 CDS Human protein_coding chr1:207872575 chr1:207872577 stopgain 0.011 0 23 hm5C_associated_SNPs_54044 0 0 1 0 2 CR1L chr1:207872619 5'GT 207872619 Upstream 43bp
chr19 38774304 38774304 1 + G T KIRP 38774302 + 38774282 38774322 41 CGAAGGTGGTGGGCAGATGCCGGGCCTCCATGCCTAGGTGG CGAAGGTGGTGGGCAGATGCCGTGCCTCCATGCCTAGGTGG < 41bp 0.803689499340165 0.464819952126569 0.91779274 0.61765826 prediction 0.60737899868033 Functional Loss - SPINT2 ENSG00000167642 CDS Human protein_coding chr19:38774302 chr19:38774304 synonymous SNV . 0 23 hm5C_associated_SNPs_54046 0 0 1 0 1 SPINT2 chr19:38774267 3'AG 38774267 Downstream 38bp
chr12 129431955 129431955 1 + G T LUAD 129431952 + 129431932 129431972 41 GCGGTGGTGAAGAATTGCTTCGCGGTGGTGAATAGCTCTGT GCGGTGGTGAAGAATTGCTTCGCTGTGGTGAATAGCTCTGT < 41bp 0.803673590544822 0.431832838620344 0.52165514 0.39424002 prediction 0.607347181089644 Functional Loss - GLT1D1 ENSG00000151948 CDS Human protein_coding chr12:129431952 chr12:129431955 synonymous SNV . 0 24 hm5C_associated_SNPs_54048 0 0 0 1 2 GLT1D1 chr12:129431883 3'AG 129431883 Downstream 73bp
chr12 129431955 129431955 1 + G T LUAD 129431952 + 129431932 129431972 41 GCGGTGGTGAAGAATTGCTTCGCGGTGGTGAATAGCTCTGT GCGGTGGTGAAGAATTGCTTCGCTGTGGTGAATAGCTCTGT < 41bp 0.803673590544822 0.431832838620344 0.52165514 0.39424002 prediction 0.607347181089644 Functional Loss - GLT1D1 ENSG00000151948 CDS Human protein_coding chr12:129431952 chr12:129431955 synonymous SNV . 0 24 hm5C_associated_SNPs_54048 0 0 0 1 2 GLT1D1 chr12:129432003 5'GT 129432003 Upstream 49bp
chr3 101443534 101443534 1 + G T rs201771736 101443531 + 101443511 101443551 41 AGCAGCAAATATGGCGGTGGCGCGCGTGGACGCGGCTTTGC AGCAGCAAATATGGCGGTGGCGCTCGTGGACGCGGCTTTGC < 41bp 0.866257651944072 0.562605767509022 0.8316958 0.2638604 prediction 0.607303768870102 Functional Loss - CEP97 ENSG00000182504 CDS Human protein_coding chr3:101443531 chr3:101443534 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_54050 0 0 1 0 1 CEP97 chr3:101443563 5'GT 101443563 Upstream 30bp
chr20 2638632 2638632 1 + G T READ 2638629 + 2638609 2638649 41 AAAAGCCCCAGGAGGTTCCTCAGGAGAATGGAATGGAAGAC AAAAGCCCCAGGAGGTTCCTCAGTAGAATGGAATGGAAGAC < 41bp 0.87808144412184 0.574431281822241 0.90786564 0.47753972 prediction 0.607300324599197 Functional Loss - NOP56 ENSG00000101361 CDS Human protein_coding chr20:2638629 chr20:2638632 stopgain 1.000 1 24 hm5C_associated_SNPs_54051 0 0 1 0 1 NOP56 chr20:2638575 3'AG 2638575 Downstream 58bp
chr3 142522890 142522890 1 + G T BLCA 142522887 + 142522867 142522907 41 GCATGTGGCAATCTTTGTCACAAGATTTAGCTATGGAGAAG GCATGTGGCAATCTTTGTCACAATATTTAGCTATGGAGAAG < 41bp 0.803648757683653 0.447719546212126 0.86801994 0.72432846 prediction 0.607297515367306 Functional Loss - TRPC1 ENSG00000144935 CDS Human protein_coding chr3:142522887 chr3:142522890 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_54052 0 0 0 0 1 TRPC1 chr3:142522819 3'AG 142522819 Downstream 72bp
chr19 48342588 48342588 1 + G T UCEC 48342585 + 48342565 48342605 41 CTTATCCCCCAGGTTTGGTTCAAGAACCGGAGGGCTAAATG CTTATCCCCCAGGTTTGGTTCAATAACCGGAGGGCTAAATG < 41bp 0.803638938774715 0.422342684619748 0.52335143 0.22614473 prediction 0.607277877549431 Functional Loss - CRX ENSG00000105392 CDS Human protein_coding chr19:48342585 chr19:48342588 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_54054 0 0 0 0 1 CRX chr19:48342577 3'AG 48342577 Downstream 12bp
chr19 35757839 35757839 1 + A C SKCM 35757835 + 35757815 35757855 41 GCTGGCCAACTTCGACCCTTCTCGACCTGGCCCCCCCAGTG GCTGGCCAACTTCGACCCTTCTCGCCCTGGCCCCCCCAGTG < 41bp 0.903624462243715 0.599993255089872 0.2747411 0.09562558 prediction 0.607262414307686 Functional Loss - LSR ENSG00000105699 CDS Human protein_coding chr19:35757835 chr19:35757839 synonymous SNV . 0 25 hm5C_associated_SNPs_54057 0 0 1 0 2 LSR chr19:35757742 3'AG 35757742 Downstream 98bp
chr19 35757839 35757839 1 + A C SKCM 35757835 + 35757815 35757855 41 GCTGGCCAACTTCGACCCTTCTCGACCTGGCCCCCCCAGTG GCTGGCCAACTTCGACCCTTCTCGCCCTGGCCCCCCCAGTG < 41bp 0.903624462243715 0.599993255089872 0.2747411 0.09562558 prediction 0.607262414307686 Functional Loss - LSR ENSG00000105699 CDS Human protein_coding chr19:35757835 chr19:35757839 synonymous SNV . 0 25 hm5C_associated_SNPs_54057 0 0 1 0 2 LSR chr19:35757870 5'GT 35757870 Upstream 32bp
chr19 44585277 44585277 1 + G T LUSC 44585275 + 44585255 44585295 41 GATGTCATGCTGGAGAACTTCAGAAACCTGCTATCAGTGGG GATGTCATGCTGGAGAACTTCATAAACCTGCTATCAGTGGG < 41bp 0.803626959492895 0.479556685999693 0.36307433 0.16060647 prediction 0.607253918985791 Functional Loss - ZNF284 ENSG00000186026 CDS Human protein_coding chr19:44585275 chr19:44585277 nonsynonymous SNV 0.944 3 23 hm5C_associated_SNPs_54059 0 0 1 0 1 ZNF284 chr19:44585294 5'GT 44585294 Upstream 18bp
chr9 32423379 32423379 1 + G T UCEC 32423376 + 32423356 32423396 41 TTCAGGCTGTAGGAATGTTTCGAGATTTCAATGACCCTTCT TTCAGGCTGTAGGAATGTTTCGATATTTCAATGACCCTTCT < 41bp 0.860460074914371 0.556833363224182 0.9038601 0.10964009 prediction 0.607253423380379 Functional Loss - ACO1 ENSG00000122729 CDS Human protein_coding chr9:32423376 chr9:32423379 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_54060 0 0 1 0 2 ACO1 chr9:32423317 3'AG 32423317 Downstream 63bp
chr9 32423379 32423379 1 + G T UCEC 32423376 + 32423356 32423396 41 TTCAGGCTGTAGGAATGTTTCGAGATTTCAATGACCCTTCT TTCAGGCTGTAGGAATGTTTCGATATTTCAATGACCCTTCT < 41bp 0.860460074914371 0.556833363224182 0.9038601 0.10964009 prediction 0.607253423380379 Functional Loss - ACO1 ENSG00000122729 CDS Human protein_coding chr9:32423376 chr9:32423379 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_54060 0 0 1 0 2 ACO1 chr9:32423417 5'GT 32423417 Upstream 39bp
chr14 95111301 95111301 1 + G T HNSC 95111298 + 95111278 95111318 41 TTCTGTCTCTCCGCAGAGAACTCGATTTCCACTTCCCCAAA TTCTGTCTCTCCGCAGAGAACTCTATTTCCACTTCCCCAAA < 41bp 0.803589809012596 0.473501263855379 0.2753949 0.3532772 prediction 0.607179618025192 Functional Loss - SERPINA13P ENSG00000187483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr14:95111298 chr14:95111301 . . 0 24 hm5C_associated_SNPs_54064 0 0 0 0 1 SERPINA13P chr14:95111294 3'AG 95111294 Downstream 8bp
chr4 88583147 88583147 1 + G T UCEC 88583145 + 88583125 88583165 41 CCCCAGTGACAGCACTCAGTCAGAGGAGGGCCTGGGCTCTG CCCCAGTGACAGCACTCAGTCATAGGAGGGCCTGGGCTCTG < 41bp 0.826068195303153 0.522500147439227 0.89844346 0.3521515 prediction 0.607136095727851 Functional Loss - DMP1 ENSG00000152592 CDS Human protein_coding chr4:88583145 chr4:88583147 stopgain 0.001 0 23 hm5C_associated_SNPs_54065 0 0 0 0 1 DMP1 chr4:88583114 3'AG 88583114 Downstream 34bp
chr17 42430078 42430078 1 + G T HNSC 42430076 + 42430056 42430096 41 TGCTGTCCTGCTGGCTTCCGCTGCGCAGCCAGGGGTACCAA TGCTGTCCTGCTGGCTTCCGCTTCGCAGCCAGGGGTACCAA < 41bp 0.803565442205099 0.494404112265328 0.15144679 0.06679845 prediction 0.607130884410199 Functional Loss - GRN ENSG00000030582 CDS Human protein_coding chr17:42430076 chr17:42430078 nonsynonymous SNV 0.228 5 23 hm5C_associated_SNPs_54066 0 0 1 1 1 GRN chr17:42430029 3'AG 42430029 Downstream 50bp
chr8 19250999 19250999 1 + G T LIHC 19250996 + 19250976 19251016 41 CTGCAGACGCCTACAGCTTCCTGGGCGTGGACCAGCTACAG CTGCAGACGCCTACAGCTTCCTGTGCGTGGACCAGCTACAG < 41bp 0.803558006349423 0.430610173814397 0.3314517 0.09832087 prediction 0.607116012698846 Functional Loss - SH2D4A ENSG00000104611 CDS Human protein_coding chr8:19250996 chr8:19250999 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_54068 0 0 0 0 1 SH2D4A chr8:19251052 5'GT 19251052 Upstream 54bp
chr20 62843466 62843466 1 + A C UCEC 62843462 + 62843442 62843482 41 GGCTGCACAGGCCAGGGTCACGTGAACAGCAACCGCAACAC GGCTGCACAGGCCAGGGTCACGTGCACAGCAACCGCAACAC < 41bp 0.803548173444813 0.399538942015393 0.6919915 0.6176756 prediction 0.607096346889626 Functional Loss - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62843462 chr20:62843466 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_54069 0 0 0 0 2 MYT1 chr20:62843401 3'AG 62843401 Downstream 66bp
chr20 62843466 62843466 1 + A C UCEC 62843462 + 62843442 62843482 41 GGCTGCACAGGCCAGGGTCACGTGAACAGCAACCGCAACAC GGCTGCACAGGCCAGGGTCACGTGCACAGCAACCGCAACAC < 41bp 0.803548173444813 0.399538942015393 0.6919915 0.6176756 prediction 0.607096346889626 Functional Loss - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62843462 chr20:62843466 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_54069 0 0 0 0 2 MYT1 chr20:62843491 5'GT 62843491 Upstream 26bp
chr19 49378957 49378957 1 + G T GBM 49378955 + 49378935 49378975 41 CCCGCCAGGGCCCCTGGGAGCAGCTTGCTCGGGATCGCAGC CCCGCCAGGGCCCCTGGGAGCATCTTGCTCGGGATCGCAGC < 41bp 0.826951014425352 0.523410497036059 0.13893184 0.16843069 prediction 0.607081034778586 Functional Loss - PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49378955 chr19:49378957 nonsynonymous SNV 0.617 3 23 hm5C_associated_SNPs_54070 0 0 1 0 1 PPP1R15A chr19:49378871 3'AG 49378871 Downstream 87bp
chr6 148861604 148861604 1 + G T rs562076284 148861602 + 148861582 148861622 41 ACAGCGACCAGTCAGGATCCCAGGAGAAGCTGCTCGTTGAC ACAGCGACCAGTCAGGATCCCATGAGAAGCTGCTCGTTGAC < 41bp 0.842315635495715 0.538797106982762 0.915442 0.25167704 prediction 0.607037057025906 Functional Loss - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148861602 chr6:148861604 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_54071 0 0 1 0 2 SASH1 chr6:148861579 3'AG 148861579 Downstream 26bp
chr6 148861604 148861604 1 + G T rs562076284 148861602 + 148861582 148861622 41 ACAGCGACCAGTCAGGATCCCAGGAGAAGCTGCTCGTTGAC ACAGCGACCAGTCAGGATCCCATGAGAAGCTGCTCGTTGAC < 41bp 0.842315635495715 0.538797106982762 0.915442 0.25167704 prediction 0.607037057025906 Functional Loss - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148861602 chr6:148861604 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_54071 0 0 1 0 2 SASH1 chr6:148861692 5'GT 148861692 Upstream 89bp
chr20 18534947 18534947 1 + G T rs7262532 18534945 + 18534925 18534965 41 ATGAAAACTTCAAGCACCTTCTGCAGGCACCACTGGATGAT ATGAAAACTTCAAGCACCTTCTTCAGGCACCACTGGATGAT < 41bp 0.803517196344785 0.497242302632467 0.07416916 0.038213223 prediction 0.607034392689571 Functional Loss - SEC23B ENSG00000101310 CDS Human protein_coding chr20:18534945 chr20:18534947 synonymous SNV . 0 23 hm5C_associated_SNPs_54072 2 0 1 0 2 SEC23B chr20:18534879 3'AG 18534879 Downstream 69bp
chr20 18534947 18534947 1 + G T rs7262532 18534945 + 18534925 18534965 41 ATGAAAACTTCAAGCACCTTCTGCAGGCACCACTGGATGAT ATGAAAACTTCAAGCACCTTCTTCAGGCACCACTGGATGAT < 41bp 0.803517196344785 0.497242302632467 0.07416916 0.038213223 prediction 0.607034392689571 Functional Loss - SEC23B ENSG00000101310 CDS Human protein_coding chr20:18534945 chr20:18534947 synonymous SNV . 0 23 hm5C_associated_SNPs_54072 2 0 1 0 2 SEC23B chr20:18535034 5'GT 18535034 Upstream 88bp
chr6 153078261 153078261 1 + A C STAD 153078257 + 153078237 153078277 41 GGGAGAATCTCCCGACTTTCCAGAAGAGTTAGAAAAATGAT GGGAGAATCTCCCGACTTTCCAGACGAGTTAGAAAAATGAT < 41bp 0.803510195607531 0.436666239409511 0.39029273 0.7856447 prediction 0.607020391215061 Functional Loss - VIP ENSG00000146469 CDS Human protein_coding chr6:153078257 chr6:153078261 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_54073 0 0 0 0 3 VIP chr6:153078231 3'AG 153078231 Downstream 31bp
chr6 153078261 153078261 1 + A C STAD 153078257 + 153078237 153078277 41 GGGAGAATCTCCCGACTTTCCAGAAGAGTTAGAAAAATGAT GGGAGAATCTCCCGACTTTCCAGACGAGTTAGAAAAATGAT < 41bp 0.803510195607531 0.436666239409511 0.39029273 0.7856447 prediction 0.607020391215061 Functional Loss - VIP ENSG00000146469 CDS Human protein_coding chr6:153078257 chr6:153078261 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_54073 0 0 0 0 3 VIP chr6:153078234 3'AG 153078234 Downstream 28bp
chr6 153078261 153078261 1 + A C STAD 153078257 + 153078237 153078277 41 GGGAGAATCTCCCGACTTTCCAGAAGAGTTAGAAAAATGAT GGGAGAATCTCCCGACTTTCCAGACGAGTTAGAAAAATGAT < 41bp 0.803510195607531 0.436666239409511 0.39029273 0.7856447 prediction 0.607020391215061 Functional Loss - VIP ENSG00000146469 CDS Human protein_coding chr6:153078257 chr6:153078261 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_54073 0 0 0 0 3 VIP chr6:153078319 5'GT 153078319 Upstream 59bp
chr12 72338170 72338170 1 + G T GBM 72338168 + 72338148 72338188 41 GGACTGTGAGTGTGGGAAAACAGAATTCAATGAGCTCATTC GGACTGTGAGTGTGGGAAAACATAATTCAATGAGCTCATTC < 41bp 0.813402955295384 0.509894391714133 0.099576324 0.12330648 prediction 0.607017127162502 Functional Loss - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72338168 chr12:72338170 stopgain 0.999 1 23 hm5C_associated_SNPs_54075 0 0 0 0 1 TPH2 chr12:72338074 3'AG 72338074 Downstream 97bp
chr11 55036774 55036774 1 + G T HNSC 55036771 + 55036751 55036791 41 TCTGAATCTAGCGCTCAGGGCAGGGCCCATCACTGGACTGA TCTGAATCTAGCGCTCAGGGCAGTGCCCATCACTGGACTGA < 41bp 0.803502634826966 0.420243411707287 0.41367978 0.12363136 prediction 0.607005269653931 Functional Loss - TRIM48 ENSG00000150244 CDS Human protein_coding chr11:55036771 chr11:55036774 nonsynonymous SNV 0.131 2 24 hm5C_associated_SNPs_54076 0 0 0 0 2 TRIM48 chr11:55036718 3'AG 55036718 Downstream 57bp
chr11 55036774 55036774 1 + G T HNSC 55036771 + 55036751 55036791 41 TCTGAATCTAGCGCTCAGGGCAGGGCCCATCACTGGACTGA TCTGAATCTAGCGCTCAGGGCAGTGCCCATCACTGGACTGA < 41bp 0.803502634826966 0.420243411707287 0.41367978 0.12363136 prediction 0.607005269653931 Functional Loss - TRIM48 ENSG00000150244 CDS Human protein_coding chr11:55036771 chr11:55036774 nonsynonymous SNV 0.131 2 24 hm5C_associated_SNPs_54076 0 0 0 0 2 TRIM48 chr11:55036815 5'GT 55036815 Upstream 42bp
chr3 12531365 12531365 1 + A C rs62637658 12531361 + 12531341 12531381 41 AGTGTATGAGACTTACGAGTCTCCATTGCCAATCCCTTTTG AGTGTATGAGACTTACGAGTCTCCCTTGCCAATCCCTTTTG < 41bp 0.803481221805814 0.385290504872887 0.9517019 0.07390985 prediction 0.606962443611628 Functional Loss - TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12531361 chr3:12531365 synonymous SNV . 0 25 hm5C_associated_SNPs_54077 2 0 1 0 1 TSEN2 chr3:12531283 3'AG 12531283 Downstream 83bp
chr20 43530271 43530271 1 + G T GBM 43530269 + 43530249 43530289 41 TGCAGCCATGAAGGCAGTCACAGAACAGGGGCATGAACTCT TGCAGCCATGAAGGCAGTCACATAACAGGGGCATGAACTCT < 41bp 0.816133274724189 0.512664826795841 0.27716315 0.10558811 prediction 0.606936895856696 Functional Loss - YWHAB ENSG00000166913 CDS Human protein_coding chr20:43530269 chr20:43530271 stopgain 0.963 1 23 hm5C_associated_SNPs_54079 0 0 1 0 1 YWHAB chr20:43530172 3'AG 43530172 Downstream 100bp
chrX 36089969 36089969 1 + G T UCEC 36089966 + 36089946 36089986 41 GGATGAATATCTTAAGAAGACTAGAGATGGTGTTTTGCCTC GGATGAATATCTTAAGAAGACTATAGATGGTGTTTTGCCTC < 41bp 0.865810070847958 0.562344272655585 0.37426 0.2854876 prediction 0.606931596384747 Functional Loss - CFAP47 ENSG00000176034 CDS Human other chrX:36089966 chrX:36089969 nonsynonymous SNV 0.012 1 24 hm5C_associated_SNPs_54080 0 0 0 0 1 CFAP47 chrX:36089942 3'AG 36089942 Downstream 28bp
chr1 117303203 117303203 1 + G T PRAD 117303201 + 117303181 117303221 41 GAGTGCAAAATTCAAGTGCACAGCAGGGAACAAAGTCAGCA GAGTGCAAAATTCAAGTGCACATCAGGGAACAAAGTCAGCA < 41bp 0.80587898562987 0.502417948320364 0.088844776 0.040121973 prediction 0.606922074619012 Functional Loss - CD2 ENSG00000116824 CDS Human protein_coding chr1:117303201 chr1:117303203 nonsynonymous SNV 0.004 4 23 hm5C_associated_SNPs_54081 0 0 0 0 1 CD2 chr1:117303254 5'GT 117303254 Upstream 52bp
chr7 100867114 100867114 1 + A C UCEC 100867110 + 100867090 100867130 41 CTGTGCGCTGTCTGGGGACCCACCAGGAGACCAGGTGAGCA CTGTGCGCTGTCTGGGGACCCACCCGGAGACCAGGTGAGCA < 41bp 0.901479167386838 0.598036255323955 0.54370075 0.19765839 prediction 0.606885824125767 Functional Loss - ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100867110 chr7:100867114 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_54083 0 0 1 0 1 ZNHIT1 chr7:100867123 5'GT 100867123 Upstream 10bp
chrX 100364503 100364503 1 + G T UCEC 100364501 + 100364481 100364521 41 GATATTGAAGTGCATGATCCCAGCAACAGTAATATCAGAAG GATATTGAAGTGCATGATCCCATCAACAGTAATATCAGAAG < 41bp 0.81597287937394 0.512542042727918 0.26643407 0.07515234 prediction 0.606861673292043 Functional Loss - CENPI ENSG00000102384 CDS Human protein_coding chrX:100364501 chrX:100364503 nonsynonymous SNV 0.941 0 23 hm5C_associated_SNPs_54085 0 0 1 0 2 CENPI chrX:100364462 3'AG 100364462 Downstream 42bp
chrX 100364503 100364503 1 + G T UCEC 100364501 + 100364481 100364521 41 GATATTGAAGTGCATGATCCCAGCAACAGTAATATCAGAAG GATATTGAAGTGCATGATCCCATCAACAGTAATATCAGAAG < 41bp 0.81597287937394 0.512542042727918 0.26643407 0.07515234 prediction 0.606861673292043 Functional Loss - CENPI ENSG00000102384 CDS Human protein_coding chrX:100364501 chrX:100364503 nonsynonymous SNV 0.941 0 23 hm5C_associated_SNPs_54085 0 0 1 0 2 CENPI chrX:100364580 5'GT 100364580 Upstream 78bp
chr12 38710783 38710783 1 + G T KIRC 38710780 + 38710760 38710800 41 TCCTCTTCTCCGCCTTCAGCCGGGCGCTGCGAGAGCCCTAC TCCTCTTCTCCGCCTTCAGCCGGTCGCTGCGAGAGCCCTAC < 41bp 0.803428313983059 0.454277912573309 0.91228104 0.31697208 prediction 0.606856627966117 Functional Loss - ALG10B ENSG00000175548 CDS Human protein_coding chr12:38710780 chr12:38710783 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_54086 0 0 1 0 1 ALG10B chr12:38710866 5'GT 38710866 Upstream 84bp
chr4 83375922 83375922 1 + G T LUSC 83375919 + 83375899 83375939 41 AGTCAGGAAGTGGAGAGAGGCCGGAATGAAGGTGTACATCT AGTCAGGAAGTGGAGAGAGGCCGTAATGAAGGTGTACATCT < 41bp 0.875019463773908 0.571601608723068 0.32912982 0.118694216 prediction 0.606835710101681 Functional Loss - ENOPH1 ENSG00000145293 CDS Human protein_coding chr4:83375919 chr4:83375922 nonsynonymous SNV 0.796 4 24 hm5C_associated_SNPs_54088 0 0 1 0 2 ENOPH1 chr4:83375875 3'AG 83375875 Downstream 48bp
chr4 83375922 83375922 1 + G T LUSC 83375919 + 83375899 83375939 41 AGTCAGGAAGTGGAGAGAGGCCGGAATGAAGGTGTACATCT AGTCAGGAAGTGGAGAGAGGCCGTAATGAAGGTGTACATCT < 41bp 0.875019463773908 0.571601608723068 0.32912982 0.118694216 prediction 0.606835710101681 Functional Loss - ENOPH1 ENSG00000145293 CDS Human protein_coding chr4:83375919 chr4:83375922 nonsynonymous SNV 0.796 4 24 hm5C_associated_SNPs_54088 0 0 1 0 2 ENOPH1 chr4:83376007 5'GT 83376007 Upstream 86bp
chr10 5966383 5966383 1 + G T UCEC 5966380 + 5966360 5966400 41 GAGGACAAGGAGCTTGAAGCCAAGATCGCAGTTGTTGAAAA GAGGACAAGGAGCTTGAAGCCAATATCGCAGTTGTTGAAAA < 41bp 0.803411647022732 0.436394057069931 0.10961375 0.040287137 prediction 0.606823294045464 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5966380 chr10:5966383 nonsynonymous SNV 0.856 3 24 hm5C_associated_SNPs_54089 0 0 1 0 1 FBXO18 chr10:5966471 5'GT 5966471 Upstream 89bp
chr11 126213306 126213306 1 + G T LUSC 126213304 + 126213284 126213324 41 TGCTCAGGAACATCCTCCACCAGGGGCAGGTGAGTGGCTTC TGCTCAGGAACATCCTCCACCATGGGCAGGTGAGTGGCTTC < 41bp 0.803398457381082 0.467930029571016 0.924543 0.078285664 prediction 0.606796914762163 Functional Loss - DCPS ENSG00000110063 CDS Human protein_coding chr11:126213304 chr11:126213306 nonsynonymous SNV 0.870 3 23 hm5C_associated_SNPs_54090 0 0 0 0 1 DCPS chr11:126213312 5'GT 126213312 Upstream 7bp
chr4 3419254 3419254 1 + G T LUAD 3419252 + 3419232 3419272 41 TCCCAGAAAAAGAGGGAGCACGGGGACCACGCAGACGGTTT TCCCAGAAAAAGAGGGAGCACGTGGACCACGCAGACGGTTT < 41bp 0.803395792227859 0.49619092739294 0.89284885 0.6524347 prediction 0.606791584455719 Functional Loss - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3419252 chr4:3419254 nonsynonymous SNV 0.467 2 23 hm5C_associated_SNPs_54091 0 0 1 0 1 RGS12 chr4:3419268 5'GT 3419268 Upstream 15bp
chr19 590577 590577 1 + G T UCEC 590575 + 590555 590595 41 ATCCACCCGTACAGCGACTTCAGGTACCGCCTCCGGGAGGG ATCCACCCGTACAGCGACTTCATGTACCGCCTCCGGGAGGG < 41bp 0.823763297137461 0.52038280593073 0.4681951 0.21995392 prediction 0.606760982413462 Functional Loss - HCN2 ENSG00000099822 CDS Human protein_coding chr19:590575 chr19:590577 nonsynonymous SNV 0.938 3 23 hm5C_associated_SNPs_54093 0 0 0 0 1 HCN2 chr19:590577 5'GT 590577 Upstream 1bp
chr3 14799105 14799105 1 + G T UCEC 14799103 + 14799083 14799123 41 ATCTCAAGCCAGAACTACACCAGCACTGGGCAGCTCCAGTG ATCTCAAGCCAGAACTACACCATCACTGGGCAGCTCCAGTG < 41bp 0.803354019976792 0.481784226790649 0.22377545 0.047189444 prediction 0.606708039953583 Functional Loss - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14799103 chr3:14799105 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_54095 0 0 0 0 1 C3orf20 chr3:14799181 5'GT 14799181 Upstream 77bp
chr1 3389979 3389979 1 + G T SKCM 3389976 + 3389956 3389996 41 GAAGCAGCAACGCCGCCTTCCGAGAGGCCCTGAGAGAGATT GAAGCAGCAACGCCGCCTTCCGATAGGCCCTGAGAGAGATT < 41bp 0.803339774739296 0.429350778837821 0.8592682 0.061642855 prediction 0.606679549478593 Functional Loss - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3389976 chr1:3389979 stopgain 0.005 0 24 hm5C_associated_SNPs_54097 0 0 0 0 1 ARHGEF16 chr1:3389957 3'AG 3389957 Downstream 23bp
chr17 41166192 41166192 1 + A C UCEC 41166188 + 41166168 41166208 41 TTCCTGATATCTTGGATGGCCCGGAGCTGCATGACGTCCTG TTCCTGATATCTTGGATGGCCCGGCGCTGCATGACGTCCTG < 41bp 0.875267861309567 0.571952801845802 0.35891348 0.23835519 prediction 0.606630118927531 Functional Loss - IFI35 ENSG00000068079 CDS Human protein_coding chr17:41166188 chr17:41166192 nonsynonymous SNV 0.268 1 25 hm5C_associated_SNPs_54102 0 0 1 0 1 IFI35 chr17:41166125 3'AG 41166125 Downstream 68bp
chr20 55909095 55909095 1 + A C rs148234267 55909091 + 55909071 55909111 41 TTTGGTAACCAGACTGTCGTCGACAATATTATCAATGACAT TTTGGTAACCAGACTGTCGTCGACCATATTATCAATGACAT < 41bp 0.803297992156688 0.409734768203142 0.06275123 0.038099766 prediction 0.606595984313377 Functional Loss - SPO11 ENSG00000054796 CDS Human protein_coding chr20:55909091 chr20:55909095 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_54107 0 0 0 0 2 SPO11 chr20:55909043 3'AG 55909043 Downstream 53bp
chr20 55909095 55909095 1 + A C rs148234267 55909091 + 55909071 55909111 41 TTTGGTAACCAGACTGTCGTCGACAATATTATCAATGACAT TTTGGTAACCAGACTGTCGTCGACCATATTATCAATGACAT < 41bp 0.803297992156688 0.409734768203142 0.06275123 0.038099766 prediction 0.606595984313377 Functional Loss - SPO11 ENSG00000054796 CDS Human protein_coding chr20:55909091 chr20:55909095 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_54107 0 0 0 0 2 SPO11 chr20:55909151 5'GT 55909151 Upstream 57bp
chr19 40199934 40199934 1 + G T LUAD 40199932 + 40199912 40199952 41 TTCAGAGATATCTCCCTGACCAGAGTGCTTATCAGCGATTG TTCAGAGATATCTCCCTGACCATAGTGCTTATCAGCGATTG < 41bp 0.803292918537766 0.489251231930528 0.39437896 0.053664356 prediction 0.606585837075533 Functional Loss - LGALS14 ENSG00000006659 CDS Human protein_coding chr19:40199932 chr19:40199934 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_54109 0 0 0 0 1 LGALS14 chr19:40199837 3'AG 40199837 Downstream 98bp
chr15 67813876 67813876 1 + G T UCEC 67813874 + 67813854 67813894 41 TACCACTGCTCCAAGGCTCCCTGGCAGGACCTGGCCCGGCA TACCACTGCTCCAAGGCTCCCTTGCAGGACCTGGCCCGGCA < 41bp 0.803284282352635 0.47754131131336 0.055452317 0.015244395 prediction 0.606568564705271 Functional Loss - C15orf61 ENSG00000189227 CDS Human protein_coding chr15:67813874 chr15:67813876 nonsynonymous SNV 0.948 0 23 hm5C_associated_SNPs_54112 0 0 1 0 1 C15orf61 chr15:67813932 5'GT 67813932 Upstream 57bp
chrX 86877360 86877360 1 + G T HNSC 86877358 + 86877338 86877378 41 AGTGGGTGGGGCATGATGTGCAGAATAGGCAAGGAGAACTG AGTGGGTGGGGCATGATGTGCATAATAGGCAAGGAGAACTG < 41bp 0.823981865036566 0.520708267733438 0.12145758 0.11060271 prediction 0.606547194606257 Functional Loss - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86877358 chrX:86877360 nonsynonymous SNV 0.952 1 23 hm5C_associated_SNPs_54113 0 0 0 0 1 KLHL4 chrX:86877423 5'GT 86877423 Upstream 64bp
chr3 167510457 167510457 1 + G T LUAD 167510454 + 167510434 167510474 41 CTCATTAATGCTGTCTATTTCAAGGGGAACTGGAAGTCGCA CTCATTAATGCTGTCTATTTCAATGGGAACTGGAAGTCGCA < 41bp 0.80326764781923 0.43280506017554 0.9417286 0.6462035 prediction 0.60653529563846 Functional Loss - SERPINI1 ENSG00000163536 CDS Human protein_coding chr3:167510454 chr3:167510457 nonsynonymous SNV 0.982 4 24 hm5C_associated_SNPs_54114 0 0 0 0 1 SERPINI1 chr3:167510378 3'AG 167510378 Downstream 80bp
chr2 228137806 228137806 1 + G T COAD 228137804 + 228137784 228137824 41 CCAGGGCACGCAAGGAGTTCCTGGAGCCCCCGGACCACCCG CCAGGGCACGCAAGGAGTTCCTTGAGCCCCCGGACCACCCG < 41bp 0.825091063851828 0.521846239437552 0.64337647 0.23097664 prediction 0.606489648828552 Functional Loss - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228137804 chr2:228137806 stopgain 0.651 1 23 hm5C_associated_SNPs_54116 0 0 0 0 1 COL4A3 chr2:228137833 5'GT 228137833 Upstream 28bp
chr3 100455465 100455465 1 + G T UCEC 100455463 + 100455443 100455483 41 GATCGTTCAGGAACACCCGACAGCATTGCTTCCTCCTCCTC GATCGTTCAGGAACACCCGACATCATTGCTTCCTCCTCCTC < 41bp 0.82864994529783 0.5254149765522 0.2838214 0.22235325 prediction 0.60646993749126 Functional Loss - TFG ENSG00000114354 CDS Human protein_coding chr3:100455463 chr3:100455465 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_54119 0 0 1 0 3 TFG chr3:100455420 3'AG 100455420 Downstream 46bp
chr3 100455465 100455465 1 + G T UCEC 100455463 + 100455443 100455483 41 GATCGTTCAGGAACACCCGACAGCATTGCTTCCTCCTCCTC GATCGTTCAGGAACACCCGACATCATTGCTTCCTCCTCCTC < 41bp 0.82864994529783 0.5254149765522 0.2838214 0.22235325 prediction 0.60646993749126 Functional Loss - TFG ENSG00000114354 CDS Human protein_coding chr3:100455463 chr3:100455465 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_54119 0 0 1 0 3 TFG chr3:100455548 5'GT 100455548 Upstream 84bp
chr3 100455465 100455465 1 + G T UCEC 100455463 + 100455443 100455483 41 GATCGTTCAGGAACACCCGACAGCATTGCTTCCTCCTCCTC GATCGTTCAGGAACACCCGACATCATTGCTTCCTCCTCCTC < 41bp 0.82864994529783 0.5254149765522 0.2838214 0.22235325 prediction 0.60646993749126 Functional Loss - TFG ENSG00000114354 CDS Human protein_coding chr3:100455463 chr3:100455465 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_54119 0 0 1 0 3 TFG chr3:100455560 5'GT 100455560 Upstream 96bp
chr6 28500111 28500111 1 + G T SKCM 28500109 + 28500089 28500129 41 TTGTTGCAGGTATGTCCGTCCAGGGGGAGGATTTGTACCTA TTGTTGCAGGTATGTCCGTCCATGGGGAGGATTTGTACCTA < 41bp 0.803229730720246 0.487104974273911 0.8869165 0.7826953 prediction 0.606459461440492 Functional Loss - GPX5 ENSG00000224586 CDS Human protein_coding chr6:28500109 chr6:28500111 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_54121 0 0 0 0 2 GPX5 chr6:28500098 3'AG 28500098 Downstream 14bp
chr6 28500111 28500111 1 + G T SKCM 28500109 + 28500089 28500129 41 TTGTTGCAGGTATGTCCGTCCAGGGGGAGGATTTGTACCTA TTGTTGCAGGTATGTCCGTCCATGGGGAGGATTTGTACCTA < 41bp 0.803229730720246 0.487104974273911 0.8869165 0.7826953 prediction 0.606459461440492 Functional Loss - GPX5 ENSG00000224586 CDS Human protein_coding chr6:28500109 chr6:28500111 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_54121 0 0 0 0 2 GPX5 chr6:28500197 5'GT 28500197 Upstream 87bp
chr1 109271508 109271508 1 + G T LUSC 109271506 + 109271486 109271526 41 CTACAGTGTGCCCCTGGAAACAGGTATGTAGCAACCACCAG CTACAGTGTGCCCCTGGAAACATGTATGTAGCAACCACCAG < 41bp 0.835246605457138 0.532021953904669 0.7627312 0.29763168 prediction 0.606449303104938 Functional Loss - FNDC7 ENSG00000143107 CDS Human protein_coding chr1:109271506 chr1:109271508 nonsynonymous SNV 0.263 1 23 hm5C_associated_SNPs_54124 0 0 0 0 1 FNDC7 chr1:109271508 5'GT 109271508 Upstream 1bp
chr3 25831594 25831594 1 + A C rs41285081 25831590 + 25831570 25831610 41 TGTGCGCGTGCGCTCGAGAGCGTCATCGCCCCCGACTGTGG TGTGCGCGTGCGCTCGAGAGCGTCCTCGCCCCCGACTGTGG < 41bp 0.846934460795828 0.543724739717846 0.027879685 0.020910025 prediction 0.606419442155965 Functional Loss - OXSM ENSG00000151093 UTR5 Human protein_coding chr3:25831590 chr3:25831594 . . 0 25 hm5C_associated_SNPs_54127 0 0 1 0 1 OXSM chr3:25831638 5'GT 25831638 Upstream 45bp
chr17 18874460 18874460 1 + G T UCEC 18874458 + 18874438 18874478 41 CATGTTTCGAGACCCCCACACAGGGGACCTGCCGTGGACCG CATGTTTCGAGACCCCCACACATGGGACCTGCCGTGGACCG < 41bp 0.853075347148341 0.549886315755539 0.92947507 0.10787901 prediction 0.606378062785605 Functional Loss - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18874458 chr17:18874460 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_54133 0 0 0 0 1 SLC5A10 chr17:18874531 5'GT 18874531 Upstream 72bp
chr11 66834286 66834286 1 + A T OV 66834282 + 66834262 66834302 41 CTGCTGCTTTGCTTCGATGTCACCAGCCCGAACAGCTTTGA CTGCTGCTTTGCTTCGATGTCACCTGCCCGAACAGCTTTGA < 41bp 0.803172383836137 0.476877908008604 0.107994735 0.072556645 prediction 0.606344767672274 Functional Loss - RHOD ENSG00000173156 CDS Human protein_coding chr11:66834282 chr11:66834286 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_54134 0 0 0 0 2 RHOD chr11:66834209 3'AG 66834209 Downstream 78bp
chr11 66834286 66834286 1 + A T OV 66834282 + 66834262 66834302 41 CTGCTGCTTTGCTTCGATGTCACCAGCCCGAACAGCTTTGA CTGCTGCTTTGCTTCGATGTCACCTGCCCGAACAGCTTTGA < 41bp 0.803172383836137 0.476877908008604 0.107994735 0.072556645 prediction 0.606344767672274 Functional Loss - RHOD ENSG00000173156 CDS Human protein_coding chr11:66834282 chr11:66834286 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_54134 0 0 0 0 2 RHOD chr11:66834318 5'GT 66834318 Upstream 33bp
chr5 137681289 137681289 1 + G T LUAD 137681286 + 137681266 137681306 41 CGGCCTTCGTTGGACTTTGACAAGATGAATCAGGTGGGACC CGGCCTTCGTTGGACTTTGACAATATGAATCAGGTGGGACC < 41bp 0.803166503464974 0.433037056784715 0.86535025 0.39884245 prediction 0.606333006929948 Functional Loss - FAM53C ENSG00000120709 CDS Human protein_coding chr5:137681286 chr5:137681289 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54135 0 0 1 0 1 FAM53C chr5:137681298 5'GT 137681298 Upstream 10bp
chr16 28914697 28914697 1 + G T UCEC 28914694 + 28914674 28914714 41 ACCCAGTGGCTCATGGTCCTCAAGATCTCACTGCCAGTCAT ACCCAGTGGCTCATGGTCCTCAATATCTCACTGCCAGTCAT < 41bp 0.883905028269276 0.580774283469359 0.21388209 0.043346882 prediction 0.606261489599833 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28914694 chr16:28914697 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_54138 0 0 1 0 1 ATP2A1 chr16:28914644 3'AG 28914644 Downstream 54bp
chr12 6437022 6437022 1 + G T LUSC 6437019 + 6436999 6437039 41 GATTGAGGGGGCCGAGGAGCCCCGGGACAGCAGGCCACGGA GATTGAGGGGGCCGAGGAGCCCCTGGACAGCAGGCCACGGA < 41bp 0.803127420636808 0.433337055156568 0.61738276 0.3104689 prediction 0.606254841273616 Functional Loss - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6437019 chr12:6437022 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_54139 0 0 0 0 1 PLEKHG6 chr12:6437112 5'GT 6437112 Upstream 91bp
chr12 52309908 52309908 1 + G T UCEC 52309905 + 52309885 52309925 41 ACCAAGCGGTACATGGCACCCGAGGTGCTGGACGAGCAGAT ACCAAGCGGTACATGGCACCCGATGTGCTGGACGAGCAGAT < 41bp 0.803119200704491 0.424713865395449 0.86243856 0.23465446 prediction 0.606238401408982 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309905 chr12:52309908 nonsynonymous SNV 0.566 5 24 hm5C_associated_SNPs_54140 0 0 0 0 1 ACVRL1 chr12:52309820 3'AG 52309820 Downstream 89bp
chr3 10157412 10157412 1 + G T SARC 10157410 + 10157390 10157430 41 CGGGACAGGAGGATCCGGTGCAGCGGGAGATTCACCAGGAC CGGGACAGGAGGATCCGGTGCATCGGGAGATTCACCAGGAC < 41bp 0.827990774239662 0.52487163255027 0.8671822 0.83867407 prediction 0.606238283378784 Functional Loss - BRK1 ENSG00000254999 CDS Human protein_coding chr3:10157410 chr3:10157412 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_54141 0 0 1 0 1 BRK1 chr3:10157503 5'GT 10157503 Upstream 92bp
chr1 26878170 26878170 1 + G T LUSC 26878167 + 26878147 26878187 41 AGGGCAAGCTCTATCTCATTCTGGACTTCCTGCGTGGTGGG AGGGCAAGCTCTATCTCATTCTGTACTTCCTGCGTGGTGGG < 41bp 0.887863640706765 0.584767163499947 0.37541166 0.17922023 prediction 0.606192954413635 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26878167 chr1:26878170 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54142 0 0 1 0 2 RPS6KA1 chr1:26878135 3'AG 26878135 Downstream 36bp
chr1 26878170 26878170 1 + G T LUSC 26878167 + 26878147 26878187 41 AGGGCAAGCTCTATCTCATTCTGGACTTCCTGCGTGGTGGG AGGGCAAGCTCTATCTCATTCTGTACTTCCTGCGTGGTGGG < 41bp 0.887863640706765 0.584767163499947 0.37541166 0.17922023 prediction 0.606192954413635 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26878167 chr1:26878170 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54142 0 0 1 0 2 RPS6KA1 chr1:26878214 5'GT 26878214 Upstream 45bp
chr3 186501406 186501406 1 + G T LGG 186501404 + 186501384 186501424 41 AGTGGTTTTTCGGATCATGTCTGGTGGCTCCGCGGATTATA AGTGGTTTTTCGGATCATGTCTTGTGGCTCCGCGGATTATA < 41bp 0.815582718774525 0.512489606501422 0.8219842 0.41870388 prediction 0.606186224546207 Functional Loss - EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186501404 chr3:186501406 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_54143 0 0 1 0 1 EIF4A2 chr3:186501428 5'GT 186501428 Upstream 23bp
chr11 68707088 68707088 1 + G T UCEC 68707085 + 68707065 68707105 41 CTCTATGCCGGCAGCGGGACCAAGAACGGATCCCTGGACCC CTCTATGCCGGCAGCGGGACCAATAACGGATCCCTGGACCC < 41bp 0.803077722467033 0.425620637185253 0.80752367 0.32402778 prediction 0.606155444934065 Functional Loss - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68707085 chr11:68707088 nonsynonymous SNV 0.944 4 24 hm5C_associated_SNPs_54145 0 0 0 0 1 IGHMBP2 chr11:68707002 3'AG 68707002 Downstream 87bp
chr19 5077390 5077390 1 + G T LUSC 5077388 + 5077368 5077408 41 TCGGCCCTAGGCTTCTTCCCCGGGAGCTCGCAGGGCTGCGA TCGGCCCTAGGCTTCTTCCCCGTGAGCTCGCAGGGCTGCGA < 41bp 0.853542724247229 0.550466568970719 0.93570226 0.37934887 prediction 0.60615231055302 Functional Loss - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5077388 chr19:5077390 nonsynonymous SNV 0.821 4 23 hm5C_associated_SNPs_54146 0 0 1 0 2 KDM4B chr19:5077378 3'AG 5077378 Downstream 13bp
chr19 5077390 5077390 1 + G T LUSC 5077388 + 5077368 5077408 41 TCGGCCCTAGGCTTCTTCCCCGGGAGCTCGCAGGGCTGCGA TCGGCCCTAGGCTTCTTCCCCGTGAGCTCGCAGGGCTGCGA < 41bp 0.853542724247229 0.550466568970719 0.93570226 0.37934887 prediction 0.60615231055302 Functional Loss - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5077388 chr19:5077390 nonsynonymous SNV 0.821 4 23 hm5C_associated_SNPs_54146 0 0 1 0 2 KDM4B chr19:5077481 5'GT 5077481 Upstream 92bp
chr1 32796465 32796465 1 + G T LUAD 32796463 + 32796443 32796483 41 ATTCGTAACGTTGCCCGGTGCTGGACATATGAGACAGCTGT ATTCGTAACGTTGCCCGGTGCTTGACATATGAGACAGCTGT < 41bp 0.826315454504951 0.523259803040607 0.21692598 0.1450364 prediction 0.606111302928687 Functional Loss - HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32796463 chr1:32796465 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_54147 0 0 1 0 2 HDAC1 chr1:32796369 3'AG 32796369 Downstream 97bp
chr1 32796465 32796465 1 + G T LUAD 32796463 + 32796443 32796483 41 ATTCGTAACGTTGCCCGGTGCTGGACATATGAGACAGCTGT ATTCGTAACGTTGCCCGGTGCTTGACATATGAGACAGCTGT < 41bp 0.826315454504951 0.523259803040607 0.21692598 0.1450364 prediction 0.606111302928687 Functional Loss - HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32796463 chr1:32796465 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_54147 0 0 1 0 2 HDAC1 chr1:32796509 5'GT 32796509 Upstream 45bp
chr2 24244608 24244608 1 + G T STAD 24244606 + 24244586 24244626 41 CCTAGGGGTGAAGGAGCGGCCAGGTATGGGGTTTGGTGAGG CCTAGGGGTGAAGGAGCGGCCATGTATGGGGTTTGGTGAGG < 41bp 0.803037495154987 0.477082888689724 0.41288906 0.09151518 prediction 0.606074990309974 Functional Loss - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24244606 chr2:24244608 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_54148 0 0 0 0 2 MFSD2B chr2:24244518 3'AG 24244518 Downstream 91bp
chr2 24244608 24244608 1 + G T STAD 24244606 + 24244586 24244626 41 CCTAGGGGTGAAGGAGCGGCCAGGTATGGGGTTTGGTGAGG CCTAGGGGTGAAGGAGCGGCCATGTATGGGGTTTGGTGAGG < 41bp 0.803037495154987 0.477082888689724 0.41288906 0.09151518 prediction 0.606074990309974 Functional Loss - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24244606 chr2:24244608 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_54148 0 0 0 0 2 MFSD2B chr2:24244608 5'GT 24244608 Upstream 1bp
chr21 47419132 47419132 1 + G T STAD 47419130 + 47419110 47419150 41 ACCGGGGTCCCGAGGGCCCCCAGGTGGGTGGATGTGGCTGG ACCGGGGTCCCGAGGGCCCCCATGTGGGTGGATGTGGCTGG < 41bp 0.803036311810571 0.472917893045645 0.90092134 0.44892156 prediction 0.606072623621142 Functional Loss - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47419130 chr21:47419132 nonsynonymous SNV 0.825 1 23 hm5C_associated_SNPs_54149 0 0 0 0 2 COL6A1 chr21:47419067 3'AG 47419067 Downstream 66bp
chr21 47419132 47419132 1 + G T STAD 47419130 + 47419110 47419150 41 ACCGGGGTCCCGAGGGCCCCCAGGTGGGTGGATGTGGCTGG ACCGGGGTCCCGAGGGCCCCCATGTGGGTGGATGTGGCTGG < 41bp 0.803036311810571 0.472917893045645 0.90092134 0.44892156 prediction 0.606072623621142 Functional Loss - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47419130 chr21:47419132 nonsynonymous SNV 0.825 1 23 hm5C_associated_SNPs_54149 0 0 0 0 2 COL6A1 chr21:47419132 5'GT 47419132 Upstream 1bp
chr7 150738265 150738265 1 + G T LUAD 150738263 + 150738243 150738283 41 TGATGCTGGATGGGCGGGACCTGCGCACCCTTGACCCCTCC TGATGCTGGATGGGCGGGACCTTCGCACCCTTGACCCCTCC < 41bp 0.803023782116343 0.4764887935478 0.07626465 0.067911 prediction 0.606047564232685 Functional Loss - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150738263 chr7:150738265 synonymous SNV . 0 23 hm5C_associated_SNPs_54150 0 0 1 0 2 ABCB8 chr7:150738186 3'AG 150738186 Downstream 80bp
chr7 150738265 150738265 1 + G T LUAD 150738263 + 150738243 150738283 41 TGATGCTGGATGGGCGGGACCTGCGCACCCTTGACCCCTCC TGATGCTGGATGGGCGGGACCTTCGCACCCTTGACCCCTCC < 41bp 0.803023782116343 0.4764887935478 0.07626465 0.067911 prediction 0.606047564232685 Functional Loss - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150738263 chr7:150738265 synonymous SNV . 0 23 hm5C_associated_SNPs_54150 0 0 1 0 2 ABCB8 chr7:150738319 5'GT 150738319 Upstream 55bp
chrX 107301374 107301374 1 + A T LUSC 107301370 + 107301350 107301390 41 CTACACCACCACTGTGGCCTCCCGAGAACAGCTTTCCATCC CTACACCACCACTGTGGCCTCCCGTGAACAGCTTTCCATCC < 41bp 0.80302104783255 0.487510605222156 0.34068567 0.15522176 prediction 0.6060420956651 Functional Loss - VSIG1 ENSG00000101842 CDS Human protein_coding chrX:107301370 chrX:107301374 synonymous SNV . 0 25 hm5C_associated_SNPs_54151 0 0 0 0 1 VSIG1 chrX:107301431 5'GT 107301431 Upstream 58bp
chr3 50091823 50091823 1 + G T UCEC 50091820 + 50091800 50091840 41 CTGTTCATTCTGCAAGAACCCAAGAGAAGGTGAGTGGCGAA CTGTTCATTCTGCAAGAACCCAATAGAAGGTGAGTGGCGAA < 41bp 0.803003106013471 0.447180861680207 0.8027283 0.11741826 prediction 0.606006212026942 Functional Loss - RBM6 ENSG00000004534 CDS Human protein_coding chr3:50091820 chr3:50091823 stopgain 0.950 1 24 hm5C_associated_SNPs_54155 0 0 1 0 1 RBM6 chr3:50091828 5'GT 50091828 Upstream 6bp
chr8 48353079 48353079 1 + G T COAD 48353076 + 48353056 48353096 41 GCTACCTCAGGGGCCGTCCCCAGGACACTGTCCGGATCTTC GCTACCTCAGGGGCCGTCCCCAGTACACTGTCCGGATCTTC < 41bp 0.823985619501909 0.520983752916393 0.90158975 0.32928905 prediction 0.606003733171032 Functional Loss - SPIDR ENSG00000164808 CDS Human protein_coding chr8:48353076 chr8:48353079 nonsynonymous SNV 0.033 4 24 hm5C_associated_SNPs_54156 0 0 1 0 1 SPIDR chr8:48353104 5'GT 48353104 Upstream 26bp
chr10 76980698 76980698 1 + G T LGG 76980696 + 76980676 76980716 41 AATAACTTTGCAGTGGGCTACAGGACTGGGGACTTCCAGCT AATAACTTTGCAGTGGGCTACATGACTGGGGACTTCCAGCT < 41bp 0.803000559238351 0.490888140575011 0.25493976 0.12665918 prediction 0.606001118476703 Functional Loss - VDAC2 ENSG00000165637 CDS Human protein_coding chr10:76980696 chr10:76980698 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_54157 0 0 1 0 1 VDAC2 chr10:76980728 5'GT 76980728 Upstream 31bp
chr1 42922986 42922986 1 + G T GBM 42922984 + 42922964 42923004 41 TGTTCCTGTCTCTGAAATGCCTGAACACAAGATCCAGTCAT TGTTCCTGTCTCTGAAATGCCTTAACACAAGATCCAGTCAT < 41bp 0.817147603888139 0.514155868025 0.28997785 0.2322191 prediction 0.605983471726278 Functional Loss - PPCS ENSG00000127125 CDS Human protein_coding chr1:42922984 chr1:42922986 stopgain 1.000 1 23 hm5C_associated_SNPs_54159 0 0 1 0 2 PPCS chr1:42922918 3'AG 42922918 Downstream 69bp
chr1 42922986 42922986 1 + G T GBM 42922984 + 42922964 42923004 41 TGTTCCTGTCTCTGAAATGCCTGAACACAAGATCCAGTCAT TGTTCCTGTCTCTGAAATGCCTTAACACAAGATCCAGTCAT < 41bp 0.817147603888139 0.514155868025 0.28997785 0.2322191 prediction 0.605983471726278 Functional Loss - PPCS ENSG00000127125 CDS Human protein_coding chr1:42922984 chr1:42922986 stopgain 1.000 1 23 hm5C_associated_SNPs_54159 0 0 1 0 2 PPCS chr1:42923021 5'GT 42923021 Upstream 36bp
chr3 127387303 127387303 1 + G T ACC 127387301 + 127387281 127387321 41 TAGGAGGTGTTCCGGCAGCACCGGGGGCCACAGCTCCTGGC TAGGAGGTGTTCCGGCAGCACCTGGGGCCACAGCTCCTGGC < 41bp 0.802980578878249 0.470182927464486 0.94960225 0.90047693 prediction 0.605961157756498 Functional Loss - PODXL2 ENSG00000114631 CDS Human protein_coding chr3:127387301 chr3:127387303 nonsynonymous SNV 0.992 2 23 hm5C_associated_SNPs_54162 0 0 1 0 1 PODXL2 chr3:127387284 3'AG 127387284 Downstream 20bp
chr19 35610288 35610288 1 + A C rs62120434 35610284 + 35610264 35610304 41 TAGGCCAGCGCTCTGACATGCAGAAGGTGACCCTGGGCCTG TAGGCCAGCGCTCTGACATGCAGACGGTGACCCTGGGCCTG < 41bp 0.886846027440153 0.583881697051461 0.90056896 0.81149304 prediction 0.605928660777385 Functional Loss - FXYD3 ENSG00000089356 CDS Human protein_coding chr19:35610284 chr19:35610288 nonsynonymous SNV 0.717 0 25 hm5C_associated_SNPs_54164 0 0 0 0 2 FXYD3 chr19:35610267 3'AG 35610267 Downstream 22bp
chr19 35610288 35610288 1 + A C rs62120434 35610284 + 35610264 35610304 41 TAGGCCAGCGCTCTGACATGCAGAAGGTGACCCTGGGCCTG TAGGCCAGCGCTCTGACATGCAGACGGTGACCCTGGGCCTG < 41bp 0.886846027440153 0.583881697051461 0.90056896 0.81149304 prediction 0.605928660777385 Functional Loss - FXYD3 ENSG00000089356 CDS Human protein_coding chr19:35610284 chr19:35610288 nonsynonymous SNV 0.717 0 25 hm5C_associated_SNPs_54164 0 0 0 0 2 FXYD3 chr19:35610320 5'GT 35610320 Upstream 33bp
chr4 79793867 79793867 1 + G T COAD 79793864 + 79793844 79793884 41 CTGAATATCTTACCTCCCCTCAAGAGTTCTCACCAGCCTTA CTGAATATCTTACCTCCCCTCAATAGTTCTCACCAGCCTTA < 41bp 0.802913838509058 0.428827108317744 0.8737062 0.23734841 prediction 0.605827677018116 Functional Loss - BMP2K ENSG00000138756 CDS Human protein_coding chr4:79793864 chr4:79793867 stopgain 1.000 0 24 hm5C_associated_SNPs_54172 0 0 1 0 1 BMP2K chr4:79793768 3'AG 79793768 Downstream 100bp
chr6 150290487 150290487 1 + G T LUAD 150290484 + 150290464 150290504 41 TGATGTACTGGGAACAAATGCTGGATCCAACAAGTAAGTGA TGATGTACTGGGAACAAATGCTGTATCCAACAAGTAAGTGA < 41bp 0.864041221547797 0.561152580398735 0.7275993 0.4130225 prediction 0.605777282298123 Functional Loss - ULBP1 ENSG00000111981 CDS Human protein_coding chr6:150290484 chr6:150290487 nonsynonymous SNV 0.009 2 24 hm5C_associated_SNPs_54174 0 0 0 0 1 ULBP1 chr6:150290496 5'GT 150290496 Upstream 10bp
chr2 234102462 234102462 1 + G T COAD 234102459 + 234102439 234102479 41 TCTCCCACTTTCCCTGCAGGCGAGGGCTGCATTGCCCTTCG TCTCCCACTTTCCCTGCAGGCGATGGCTGCATTGCCCTTCG < 41bp 0.802861201176661 0.421141958663442 0.9325694 0.35752612 prediction 0.605722402353322 Functional Loss - INPP5D ENSG00000168918 CDS Human protein_coding chr2:234102459 chr2:234102462 nonsynonymous SNV 0.683 4 24 hm5C_associated_SNPs_54176 0 0 1 0 1 INPP5D chr2:234102458 3'AG 234102458 Downstream 5bp
chr12 7047656 7047656 1 + G T BLCA 7047653 + 7047633 7047673 41 GTATCCCACAGAAGTTGGCTCAGGAGGGCCGTGCTCCGGTG GTATCCCACAGAAGTTGGCTCAGTAGGGCCGTGCTCCGGTG < 41bp 0.892129021680496 0.589275444127678 0.91245574 0.2801594 prediction 0.605707155105635 Functional Loss - ATN1 ENSG00000111676 CDS Human protein_coding chr12:7047653 chr12:7047656 stopgain 0.962 0 24 hm5C_associated_SNPs_54178 0 0 1 0 1 ATN1 chr12:7047644 3'AG 7047644 Downstream 13bp
chr17 38600328 38600328 1 + A C COAD 38600324 + 38600304 38600344 41 TCGAGGCCATCCAGGAAAGCCTGCAGCCCTCTGGTAAGGTA TCGAGGCCATCCAGGAAAGCCTGCCGCCCTCTGGTAAGGTA < 41bp 0.802851041624425 0.415536633698952 0.26414454 0.17497444 prediction 0.605702083248851 Functional Loss - IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38600324 chr17:38600328 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_54179 0 0 1 0 1 IGFBP4 chr17:38600336 5'GT 38600336 Upstream 9bp
chr5 176798907 176798907 1 + G T SARC 176798905 + 176798885 176798925 41 CTGCTGAACCGGGTGCAGAGCAGCGGGGCCCACGACCAGAG CTGCTGAACCGGGTGCAGAGCATCGGGGCCCACGACCAGAG < 41bp 0.802844878558083 0.482141615194997 0.8995432 0.72295576 prediction 0.605689757116166 Functional Loss - RGS14 ENSG00000169220 CDS Human protein_coding chr5:176798905 chr5:176798907 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_54180 0 0 1 0 1 RGS14 chr5:176798874 3'AG 176798874 Downstream 34bp
chr2 235961378 235961378 1 + G T THYM 235961376 + 235961356 235961396 41 TCTCCCCACCGGGACAGGAACGGGGTTGTGGACAGCGAGGT TCTCCCCACCGGGACAGGAACGTGGTTGTGGACAGCGAGGT < 41bp 0.846858490567428 0.544015521253852 0.9255338 0.4543972 prediction 0.605685938627152 Functional Loss - SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235961376 chr2:235961378 nonsynonymous SNV 0.963 4 23 hm5C_associated_SNPs_54181 0 0 1 0 1 SH3BP4 chr2:235961394 5'GT 235961394 Upstream 17bp
chr5 72251947 72251947 1 + G T COAD 72251944 + 72251924 72251964 41 ATGGTCATGGCGTATTTCGTCGAGAATTTTTGGGTAAGCTT ATGGTCATGGCGTATTTCGTCGATAATTTTTGGGTAAGCTT < 41bp 0.802842827280428 0.465976014628134 0.7251356 0.18304694 prediction 0.605685654560857 Functional Loss - FCHO2 ENSG00000157107 CDS Human protein_coding chr5:72251944 chr5:72251947 nonsynonymous SNV 0.861 0 24 hm5C_associated_SNPs_54182 0 0 1 0 1 FCHO2 chr5:72251956 5'GT 72251956 Upstream 10bp
chr12 9072417 9072417 1 + G T UCEC 9072415 + 9072395 9072435 41 TCCACCAGTTCATGCTCCAGCAGCAGCTCAGTAATGCCCAG TCCACCAGTTCATGCTCCAGCATCAGCTCAGTAATGCCCAG < 41bp 0.802833466957357 0.47293348815146 0.42293453 0.111079216 prediction 0.605666933914713 Functional Loss - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9072415 chr12:9072417 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_54183 0 0 0 0 2 PHC1 chr12:9072352 3'AG 9072352 Downstream 66bp
chr12 9072417 9072417 1 + G T UCEC 9072415 + 9072395 9072435 41 TCCACCAGTTCATGCTCCAGCAGCAGCTCAGTAATGCCCAG TCCACCAGTTCATGCTCCAGCATCAGCTCAGTAATGCCCAG < 41bp 0.802833466957357 0.47293348815146 0.42293453 0.111079216 prediction 0.605666933914713 Functional Loss - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9072415 chr12:9072417 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_54183 0 0 0 0 2 PHC1 chr12:9072462 5'GT 9072462 Upstream 46bp
chr16 10841060 10841060 1 + G T LUAD 10841057 + 10841037 10841077 41 ACACAAAATCTTGGTATTGTCTGGGAAAGGCGGTGTTGGGA ACACAAAATCTTGGTATTGTCTGTGAAAGGCGGTGTTGGGA < 41bp 0.87716682297322 0.5743510851763 0.33884498 0.05151871 prediction 0.60563147559384 Functional Loss - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10841057 chr16:10841060 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54184 0 0 1 0 2 NUBP1 chr16:10841000 3'AG 10841000 Downstream 61bp
chr16 10841060 10841060 1 + G T LUAD 10841057 + 10841037 10841077 41 ACACAAAATCTTGGTATTGTCTGGGAAAGGCGGTGTTGGGA ACACAAAATCTTGGTATTGTCTGTGAAAGGCGGTGTTGGGA < 41bp 0.87716682297322 0.5743510851763 0.33884498 0.05151871 prediction 0.60563147559384 Functional Loss - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10841057 chr16:10841060 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54184 0 0 1 0 2 NUBP1 chr16:10841133 5'GT 10841133 Upstream 74bp
chr2 71368480 71368480 1 + A C UCEC 71368476 + 71368456 71368496 41 GCCTTGCTGAAATTTATGAACAGGAGTACATCAAACTCAAC GCCTTGCTGAAATTTATGAACAGGCGTACATCAAACTCAAC < 41bp 0.884975866295793 0.582167811373376 0.8917302 0.88601375 prediction 0.605616109844835 Functional Loss - MPHOSPH10 ENSG00000124383 CDS Human protein_coding chr2:71368476 chr2:71368480 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_54185 0 0 1 0 1 MPHOSPH10 chr2:71368499 5'GT 71368499 Upstream 20bp
chr12 124220152 124220152 1 + G T LUSC 124220150 + 124220130 124220170 41 ATCCAGGAGGGGCTGAACACCCGCATCCAGGATCTCTACAC ATCCAGGAGGGGCTGAACACCCTCATCCAGGATCTCTACAC < 41bp 0.833182538029036 0.530389635098119 0.25508878 0.13309655 prediction 0.605585805861835 Functional Loss - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124220150 chr12:124220152 nonsynonymous SNV 0.085 5 23 hm5C_associated_SNPs_54187 0 0 1 0 2 ATP6V0A2 chr12:124220078 3'AG 124220078 Downstream 75bp
chr12 124220152 124220152 1 + G T LUSC 124220150 + 124220130 124220170 41 ATCCAGGAGGGGCTGAACACCCGCATCCAGGATCTCTACAC ATCCAGGAGGGGCTGAACACCCTCATCCAGGATCTCTACAC < 41bp 0.833182538029036 0.530389635098119 0.25508878 0.13309655 prediction 0.605585805861835 Functional Loss - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124220150 chr12:124220152 nonsynonymous SNV 0.085 5 23 hm5C_associated_SNPs_54187 0 0 1 0 2 ATP6V0A2 chr12:124220171 5'GT 124220171 Upstream 20bp
chrX 38534989 38534989 1 + A T BLCA 38534985 + 38534965 38535005 41 TGCTGTGGTGTGCAGAACTACACCAACTGGAGCACCAGCCC TGCTGTGGTGTGCAGAACTACACCTACTGGAGCACCAGCCC < 41bp 0.802778633251309 0.472761184232911 0.14540869 0.104442924 prediction 0.605557266502619 Functional Loss - TSPAN7 ENSG00000156298;ENSG00000250349 CDS Human other chrX:38534985 chrX:38534989 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_54189 0 0 1 0 1 TSPAN7 chrX:38534959 3'AG 38534959 Downstream 31bp
chr15 29385314 29385314 1 + G T LUSC 29385312 + 29385292 29385332 41 GAACCAGAAGACCTCATCGACGGGATCATCTTTGCTGCCAA GAACCAGAAGACCTCATCGACGTGATCATCTTTGCTGCCAA < 41bp 0.802771008877745 0.485825244034651 0.87967193 0.34330857 prediction 0.605542017755491 Functional Loss - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29385312 chr15:29385314 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_54190 0 0 1 0 1 APBA2 chr15:29385278 3'AG 29385278 Downstream 37bp
chr20 42087030 42087030 1 + G T HNSC 42087027 + 42087007 42087047 41 CTTCGTGGAGTTCGAGGACTCCCGCGACGCCGACGACGCCG CTTCGTGGAGTTCGAGGACTCCCTCGACGCCGACGACGCCG < 41bp 0.802753569477038 0.45846695603503 0.17487067 0.10631275 prediction 0.605507138954077 Functional Loss - SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42087027 chr20:42087030 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_54192 0 0 1 0 1 SRSF6 chr20:42087001 3'AG 42087001 Downstream 30bp
chr18 10485748 10485748 1 + G T UCEC 10485746 + 10485726 10485766 41 AGCCGCGGCGTCCTCTCGTCCAGGGTCATGGGAGGCACCGA AGCCGCGGCGTCCTCTCGTCCATGGTCATGGGAGGCACCGA < 41bp 0.8577932825384 0.555076789379378 0.84410906 0.086224556 prediction 0.605432986318043 Functional Loss - APCDD1 ENSG00000154856;ENSG00000154856 exonic;splicing Human protein_coding chr18:10485746 chr18:10485748 nonsynonymous SNV 0.129 2 23 hm5C_associated_SNPs_54195 0 0 0 0 1 APCDD1 chr18:10485780 5'GT 10485780 Upstream 33bp
chr5 156638359 156638359 1 + G T LUAD 156638357 + 156638337 156638377 41 GATCGTGAGAGCCGGCAGCGCTGGGTGCTGGCCCTTAAAGA GATCGTGAGAGCCGGCAGCGCTTGGTGCTGGCCCTTAAAGA < 41bp 0.837244922822631 0.534529642957052 0.4974079 0.3700809 prediction 0.605430559731158 Functional Loss - ITK ENSG00000113263 CDS Human protein_coding chr5:156638357 chr5:156638359 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_54196 0 0 0 0 2 ITK chr5:156638298 3'AG 156638298 Downstream 62bp
chr5 156638359 156638359 1 + G T LUAD 156638357 + 156638337 156638377 41 GATCGTGAGAGCCGGCAGCGCTGGGTGCTGGCCCTTAAAGA GATCGTGAGAGCCGGCAGCGCTTGGTGCTGGCCCTTAAAGA < 41bp 0.837244922822631 0.534529642957052 0.4974079 0.3700809 prediction 0.605430559731158 Functional Loss - ITK ENSG00000113263 CDS Human protein_coding chr5:156638357 chr5:156638359 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_54196 0 0 0 0 2 ITK chr5:156638379 5'GT 156638379 Upstream 21bp
chr19 40095959 40095959 1 + A C UCEC 40095955 + 40095935 40095975 41 GATATGGATGTTGGAGGAGACAACAGACTACGTGCCCTTTG GATATGGATGTTGGAGGAGACAACCGACTACGTGCCCTTTG < 41bp 0.889733727574108 0.587020368768806 0.3452841 0.20215183 prediction 0.605426717610606 Functional Loss - LGALS13 ENSG00000105198 CDS Human protein_coding chr19:40095955 chr19:40095959 synonymous SNV . 0 25 hm5C_associated_SNPs_54197 0 0 0 0 1 LGALS13 chr19:40096028 5'GT 40096028 Upstream 70bp
chr12 7065331 7065331 1 + G T LUSC 7065328 + 7065308 7065348 41 ACCACAGCCGAGTGATCCTGCAGGGACGGGACAGTAACATC ACCACAGCCGAGTGATCCTGCAGTGACGGGACAGTAACATC < 41bp 0.802708730637221 0.412354829912598 0.6793787 0.24122724 prediction 0.605417461274443 Functional Loss - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7065328 chr12:7065331 stopgain 1.000 0 24 hm5C_associated_SNPs_54200 0 0 0 0 2 PTPN6 chr12:7065305 3'AG 7065305 Downstream 27bp
chr12 7065331 7065331 1 + G T LUSC 7065328 + 7065308 7065348 41 ACCACAGCCGAGTGATCCTGCAGGGACGGGACAGTAACATC ACCACAGCCGAGTGATCCTGCAGTGACGGGACAGTAACATC < 41bp 0.802708730637221 0.412354829912598 0.6793787 0.24122724 prediction 0.605417461274443 Functional Loss - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7065328 chr12:7065331 stopgain 1.000 0 24 hm5C_associated_SNPs_54200 0 0 0 0 2 PTPN6 chr12:7065384 5'GT 7065384 Upstream 54bp
chr6 28253453 28253453 1 + G T SKCM 28253451 + 28253431 28253471 41 CCCTGAAGTGTGAACCTCCACAGCGTCCTCAAGGGAACCCC CCCTGAAGTGTGAACCTCCACATCGTCCTCAAGGGAACCCC < 41bp 0.847140615631085 0.544465667186588 0.007004857 0.0021696389 prediction 0.605349896888993 Functional Loss - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28253451 chr6:28253453 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_54204 0 0 0 0 1 PGBD1 chr6:28253484 5'GT 28253484 Upstream 32bp
chrX 86067949 86067949 1 + G T LUSC 86067946 + 86067926 86067966 41 GGCATTGCCCGCTGGATTCCCTGGACCATTCATTTTTGCTG GGCATTGCCCGCTGGATTCCCTGTACCATTCATTTTTGCTG < 41bp 0.80263855728758 0.48795426813381 0.033091784 0.03814128 prediction 0.605277114575161 Functional Loss - DACH2 ENSG00000126733 CDS Human protein_coding chrX:86067946 chrX:86067949 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_54208 0 0 0 0 3 DACH2 chrX:86067859 3'AG 86067859 Downstream 91bp
chrX 86067949 86067949 1 + G T LUSC 86067946 + 86067926 86067966 41 GGCATTGCCCGCTGGATTCCCTGGACCATTCATTTTTGCTG GGCATTGCCCGCTGGATTCCCTGTACCATTCATTTTTGCTG < 41bp 0.80263855728758 0.48795426813381 0.033091784 0.03814128 prediction 0.605277114575161 Functional Loss - DACH2 ENSG00000126733 CDS Human protein_coding chrX:86067946 chrX:86067949 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_54208 0 0 0 0 3 DACH2 chrX:86068007 5'GT 86068007 Upstream 59bp
chrX 86067949 86067949 1 + G T LUSC 86067946 + 86067926 86067966 41 GGCATTGCCCGCTGGATTCCCTGGACCATTCATTTTTGCTG GGCATTGCCCGCTGGATTCCCTGTACCATTCATTTTTGCTG < 41bp 0.80263855728758 0.48795426813381 0.033091784 0.03814128 prediction 0.605277114575161 Functional Loss - DACH2 ENSG00000126733 CDS Human protein_coding chrX:86067946 chrX:86067949 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_54208 0 0 0 0 3 DACH2 chrX:86068037 5'GT 86068037 Upstream 89bp
chr4 3446634 3446634 1 + G T SKCM 3446631 + 3446611 3446651 41 TCGGGCCTCAGCTGCCTGGCCTGGAACTCCGATCTGCTCTA TCGGGCCTCAGCTGCCTGGCCTGTAACTCCGATCTGCTCTA < 41bp 0.889442716290843 0.586837333763484 0.9196025 0.5951781 prediction 0.605210765054718 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3446631 chr4:3446634 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54211 0 0 0 0 2 HGFAC chr4:3446546 3'AG 3446546 Downstream 89bp
chr4 3446634 3446634 1 + G T SKCM 3446631 + 3446611 3446651 41 TCGGGCCTCAGCTGCCTGGCCTGGAACTCCGATCTGCTCTA TCGGGCCTCAGCTGCCTGGCCTGTAACTCCGATCTGCTCTA < 41bp 0.889442716290843 0.586837333763484 0.9196025 0.5951781 prediction 0.605210765054718 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3446631 chr4:3446634 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54211 0 0 0 0 2 HGFAC chr4:3446720 5'GT 3446720 Upstream 87bp
chr6 37418091 37418091 1 + A C COAD 37418087 + 37418067 37418107 41 CCACTGAAATTCCTGACACTCAGGAAATGAGCGATTGGATG CCACTGAAATTCCTGACACTCAGGCAATGAGCGATTGGATG < 41bp 0.802605299040242 0.405644450336917 0.90629005 0.86934066 prediction 0.605210598080485 Functional Loss - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37418087 chr6:37418091 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_54212 0 0 1 0 2 CMTR1 chr6:37418027 3'AG 37418027 Downstream 65bp
chr6 37418091 37418091 1 + A C COAD 37418087 + 37418067 37418107 41 CCACTGAAATTCCTGACACTCAGGAAATGAGCGATTGGATG CCACTGAAATTCCTGACACTCAGGCAATGAGCGATTGGATG < 41bp 0.802605299040242 0.405644450336917 0.90629005 0.86934066 prediction 0.605210598080485 Functional Loss - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37418087 chr6:37418091 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_54212 0 0 1 0 2 CMTR1 chr6:37418119 5'GT 37418119 Upstream 29bp
chr17 40714478 40714478 1 + G T rs191068578 40714475 + 40714455 40714495 41 AGCCCCGAGGCGCCGTCTACCAGGCCCCGTCCCCTCCCCCG AGCCCCGAGGCGCCGTCTACCAGTCCCCGTCCCCTCCCCCG < 41bp 0.802603574027345 0.492927211346535 0.9124501 0.23578456 prediction 0.60520714805469 Functional Loss - COASY ENSG00000068120 CDS Human protein_coding chr17:40714475 chr17:40714478 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_54213 0 0 1 0 1 COASY chr17:40714505 5'GT 40714505 Upstream 28bp
chr9 135374919 135374919 1 + G T BLCA 135374917 + 135374897 135374937 41 ATGACATCCGCATCAGTGACCAGGATGACCGGCGCATGAAG ATGACATCCGCATCAGTGACCATGATGACCGGCGCATGAAG < 41bp 0.802583543430322 0.475960229062501 0.85266286 0.14209244 prediction 0.605167086860645 Functional Loss - CFAP77 ENSG00000188523 CDS Human protein_coding chr9:135374917 chr9:135374919 nonsynonymous SNV 0.993 0 23 hm5C_associated_SNPs_54218 0 0 0 0 1 CFAP77 chr9:135374987 5'GT 135374987 Upstream 69bp
chr9 135374920 135374920 1 + G T BLCA 135374917 + 135374897 135374937 41 ATGACATCCGCATCAGTGACCAGGATGACCGGCGCATGAAG ATGACATCCGCATCAGTGACCAGTATGACCGGCGCATGAAG < 41bp 0.802583543430322 0.427848961489999 0.85266286 0.17124799 prediction 0.605167086860645 Functional Loss - CFAP77 ENSG00000188523 CDS Human protein_coding chr9:135374917 chr9:135374920 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_54219 0 0 0 0 1 CFAP77 chr9:135374987 5'GT 135374987 Upstream 68bp
chr15 44671957 44671957 1 + G T LIHC 44671954 + 44671934 44671974 41 AGCAATCTCCCATCTTCCAACTGGACAACCTCTCTCCCCAA AGCAATCTCCCATCTTCCAACTGTACAACCTCTCTCCCCAA < 41bp 0.802574206335063 0.442899400114522 0.22581866 0.05934781 prediction 0.605148412670127 Functional Loss - CASC4 ENSG00000166734 CDS Human protein_coding chr15:44671954 chr15:44671957 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_54220 0 0 1 0 2 CASC4 chr15:44671888 3'AG 44671888 Downstream 70bp
chr15 44671957 44671957 1 + G T LIHC 44671954 + 44671934 44671974 41 AGCAATCTCCCATCTTCCAACTGGACAACCTCTCTCCCCAA AGCAATCTCCCATCTTCCAACTGTACAACCTCTCTCCCCAA < 41bp 0.802574206335063 0.442899400114522 0.22581866 0.05934781 prediction 0.605148412670127 Functional Loss - CASC4 ENSG00000166734 CDS Human protein_coding chr15:44671954 chr15:44671957 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_54220 0 0 1 0 2 CASC4 chr15:44671986 5'GT 44671986 Upstream 30bp
chr19 22785179 22785179 1 + G T rs76240421 22785177 + 22785157 22785197 41 GGCAGCTGAAGGAGCAAAGGCTGCGCTGCCGGTGCCTGGCT GGCAGCTGAAGGAGCAAAGGCTTCGCTGCCGGTGCCTGGCT < 41bp 0.809245710803412 0.50668146093445 0.38403434 0.2066276 prediction 0.605128499737924 Functional Loss - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22785177 chr19:22785179 . . 0 23 hm5C_associated_SNPs_54222 0 0 0 0 1 GOLGA2P9 chr19:22785099 3'AG 22785099 Downstream 81bp
chr17 41352530 41352530 1 + G T UCEC 41352528 + 41352508 41352548 41 CTGGAGGGGAGAACCAGCCACAGGAGCACAGCATAAGTGAC CTGGAGGGGAGAACCAGCCACATGAGCACAGCATAAGTGAC < 41bp 0.802527546103491 0.483750357912266 0.46403825 0.1881237 prediction 0.605055092206982 Functional Loss - NBR1 ENSG00000188554 CDS Human protein_coding chr17:41352528 chr17:41352530 nonsynonymous SNV 0.773 0 23 hm5C_associated_SNPs_54225 0 0 1 0 1 NBR1 chr17:41352625 5'GT 41352625 Upstream 96bp
chr22 39125575 39125575 1 + G T LUAD 39125573 + 39125553 39125593 41 ACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTAGGAG ACGAGACGAGGGGGGCCCGTCTTGTGGGCCAGCAGTAGGAG < 41bp 0.802482596218238 0.465806215765356 0.50631815 0.1497258 prediction 0.604965192436476 Functional Loss - GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125573 chr22:39125575 nonsynonymous SNV 0.008 1 23 hm5C_associated_SNPs_54228 0 0 1 0 1 GTPBP1 chr22:39125667 5'GT 39125667 Upstream 93bp
chr16 1826089 1826089 1 + G T STAD 1826086 + 1826066 1826106 41 TAGGCGCTGGAGGCCTGCAGCACGGAGCGGGAGCGCATGGG TAGGCGCTGGAGGCCTGCAGCACTGAGCGGGAGCGCATGGG < 41bp 0.875002078901324 0.57252416806589 0.8791513 0.4052436 prediction 0.604955821670866 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1826086 chr16:1826089 synonymous SNV . 0 24 hm5C_associated_SNPs_54229 0 0 0 0 1 EME2 chr16:1826069 3'AG 1826069 Downstream 21bp
chr1 46033774 46033774 1 + G T LUAD 46033772 + 46033752 46033792 41 CTAAGGGGCTGGTGCAGGCGCTGGGCCTGTCCAACTTCAAC CTAAGGGGCTGGTGCAGGCGCTTGGCCTGTCCAACTTCAAC < 41bp 0.802473696032357 0.478983941061121 0.061232567 0.03923306 prediction 0.604947392064714 Functional Loss - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46033772 chr1:46033774 synonymous SNV . 0 23 hm5C_associated_SNPs_54230 0 0 1 1 1 AKR1A1 chr1:46033849 5'GT 46033849 Upstream 76bp
chr6 55266641 55266641 1 + G T UCEC 55266638 + 55266618 55266658 41 TCCTTCATCGATCCAAATACCTGGAGAACTCTGATTCATTA TCCTTCATCGATCCAAATACCTGTAGAACTCTGATTCATTA < 41bp 0.850844398633596 0.548372188902122 0.09229007 0.048535675 prediction 0.604944419462948 Functional Loss - GFRAL ENSG00000187871 CDS Human protein_coding chr6:55266638 chr6:55266641 nonsynonymous SNV 0.038 3 24 hm5C_associated_SNPs_54233 0 0 0 0 1 GFRAL chr6:55266588 3'AG 55266588 Downstream 54bp
chr7 102113378 102113378 1 + G T CESC 102113376 + 102113356 102113396 41 ATCCTGAAGTGGCCCCAGCCCTGGGCCCTTGGCCAGGTGGT ATCCTGAAGTGGCCCCAGCCCTTGGCCCTTGGCCAGGTGGT < 41bp 0.832078659674882 0.529616305597343 0.7198863 0.19967741 prediction 0.604924708155079 Functional Loss - LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102113376 chr7:102113378 nonsynonymous SNV 0.155 0 23 hm5C_associated_SNPs_54234 0 0 1 0 1 LRWD1 chr7:102113356 3'AG 102113356 Downstream 23bp
chr2 233271828 233271828 1 + G T UCEC 233271825 + 233271805 233271845 41 GCCGAGGCCCTGGGTGCCGCCAAGAAGCTGCAGCCTGCACA GCCGAGGCCCTGGGTGCCGCCAATAAGCTGCAGCCTGCACA < 41bp 0.886494682079806 0.584038317428301 0.39092866 0.3358026 prediction 0.604912729303009 Functional Loss - ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233271825 chr2:233271828 nonsynonymous SNV 0.023 2 24 hm5C_associated_SNPs_54235 0 0 0 0 2 ALPPL2 chr2:233271767 3'AG 233271767 Downstream 62bp
chr2 233271828 233271828 1 + G T UCEC 233271825 + 233271805 233271845 41 GCCGAGGCCCTGGGTGCCGCCAAGAAGCTGCAGCCTGCACA GCCGAGGCCCTGGGTGCCGCCAATAAGCTGCAGCCTGCACA < 41bp 0.886494682079806 0.584038317428301 0.39092866 0.3358026 prediction 0.604912729303009 Functional Loss - ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233271825 chr2:233271828 nonsynonymous SNV 0.023 2 24 hm5C_associated_SNPs_54235 0 0 0 0 2 ALPPL2 chr2:233271883 5'GT 233271883 Upstream 56bp
chr3 129251438 129251438 1 + G T LUAD 129251435 + 129251415 129251455 41 GCAGAGAAGGAGGTCACCCGCATGGTCATCATCATGGTCAT GCAGAGAAGGAGGTCACCCGCATTGTCATCATCATGGTCAT < 41bp 0.802450158020783 0.423650769027095 0.24091029 0.10378048 prediction 0.604900316041566 Functional Loss - RHO ENSG00000163914 CDS Human protein_coding chr3:129251435 chr3:129251438 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54238 0 0 0 0 1 RHO chr3:129251376 3'AG 129251376 Downstream 63bp
chr1 11577619 11577619 1 + A T SARC 11577615 + 11577595 11577635 41 ATGCCTGCAGCTCTGGGCCTCTGGAGCCTCTACCTGGCACC ATGCCTGCAGCTCTGGGCCTCTGGTGCCTCTACCTGGCACC < 41bp 0.802449301355171 0.498509929529431 0.9194325 0.90499264 prediction 0.604898602710343 Functional Loss - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11577615 chr1:11577619 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_54239 0 0 0 0 2 DISP3 chr1:11577520 3'AG 11577520 Downstream 100bp
chr1 11577619 11577619 1 + A T SARC 11577615 + 11577595 11577635 41 ATGCCTGCAGCTCTGGGCCTCTGGAGCCTCTACCTGGCACC ATGCCTGCAGCTCTGGGCCTCTGGTGCCTCTACCTGGCACC < 41bp 0.802449301355171 0.498509929529431 0.9194325 0.90499264 prediction 0.604898602710343 Functional Loss - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11577615 chr1:11577619 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_54239 0 0 0 0 2 DISP3 chr1:11577659 5'GT 11577659 Upstream 41bp
chr19 37203754 37203754 1 + G T GBM 37203752 + 37203732 37203772 41 AGAGCCATGGACATCATTTGCAGGTCATACCTGCTTGGGTG AGAGCCATGGACATCATTTGCATGTCATACCTGCTTGGGTG < 41bp 0.841905648823404 0.539465751162598 0.8520075 0.35853267 prediction 0.604879795321614 Functional Loss - ZNF567 ENSG00000189042 CDS Human protein_coding chr19:37203752 chr19:37203754 nonsynonymous SNV 0.974 1 23 hm5C_associated_SNPs_54240 0 0 1 0 1 ZNF567 chr19:37203769 5'GT 37203769 Upstream 16bp
chr6 44336129 44336129 1 + G T COAD 44336126 + 44336106 44336146 41 TTCTCCACAGATATTGATCCCAGGAATGGAATCCCAAAGTT TTCTCCACAGATATTGATCCCAGTAATGGAATCCCAAAGTT < 41bp 0.80242453049864 0.43307333135968 0.46242052 0.35848898 prediction 0.60484906099728 Functional Loss - SPATS1 ENSG00000249481 CDS Human protein_coding chr6:44336126 chr6:44336129 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_54242 0 0 0 0 1 SPATS1 chr6:44336116 3'AG 44336116 Downstream 14bp
chr3 102189341 102189341 1 + G T UCEC 102189338 + 102189318 102189358 41 CTCTGCTGGTCCCATCATTACTCGGAGTGGTAAGTGTGCTC CTCTGCTGGTCCCATCATTACTCTGAGTGGTAAGTGTGCTC < 41bp 0.802421122125905 0.449579730584713 0.4806848 0.29864743 prediction 0.60484224425181 Functional Loss - ZPLD1 ENSG00000170044 CDS Human protein_coding chr3:102189338 chr3:102189341 nonsynonymous SNV 0.707 4 24 hm5C_associated_SNPs_54243 0 0 0 0 1 ZPLD1 chr3:102189346 5'GT 102189346 Upstream 6bp
chr3 127325529 127325529 1 + A C rs558806976 127325525 + 127325505 127325545 41 ACTGGCGTCCTGCCCCAGCTCAGCATGGTCAAGTACAACTG ACTGGCGTCCTGCCCCAGCTCAGCCTGGTCAAGTACAACTG < 41bp 0.912076688197331 0.609661288269439 0.23753595 0.14121482 prediction 0.604830799855786 Functional Loss - MCM2 ENSG00000073111 CDS Human protein_coding chr3:127325525 chr3:127325529 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_54246 0 0 1 0 1 MCM2 chr3:127325453 3'AG 127325453 Downstream 77bp
chr1 158259897 158259897 1 + G T GBM 158259895 + 158259875 158259915 41 GCTGCTAGCTCTTCTTCTCCCAGGTGGTGACAATGCAGACG GCTGCTAGCTCTTCTTCTCCCATGTGGTGACAATGCAGACG < 41bp 0.814194885641573 0.511779593671138 0.8788557 0.37949955 prediction 0.604830583940871 Functional Loss - CD1C ENSG00000158481 CDS Human protein_coding chr1:158259895 chr1:158259897 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_54247 0 0 0 0 1 CD1C chr1:158259915 5'GT 158259915 Upstream 19bp
chr12 109288140 109288140 1 + G T UCEC 109288137 + 109288117 109288157 41 CAGCCAGGCCGGGGGCAGATCATGAAGGTGAGTGTGAGGGT CAGCCAGGCCGGGGGCAGATCATTAAGGTGAGTGTGAGGGT < 41bp 0.802414068507419 0.426076011890582 0.5199285 0.4242897 prediction 0.604828137014838 Functional Loss - DAO ENSG00000110887 CDS Human protein_coding chr12:109288137 chr12:109288140 nonsynonymous SNV 0.953 0 24 hm5C_associated_SNPs_54248 0 0 0 0 1 DAO chr12:109288143 5'GT 109288143 Upstream 4bp
chr2 79348721 79348721 1 + G T LUAD 79348719 + 79348699 79348739 41 CAGACAGAGTTGCCCCAGGCCCGGATCAGCTGCCCAGAAGG CAGACAGAGTTGCCCCAGGCCCTGATCAGCTGCCCAGAAGG < 41bp 0.802412249015629 0.471657847642274 0.29466376 0.06828874 prediction 0.604824498031259 Functional Loss - REG1A ENSG00000115386 CDS Human protein_coding chr2:79348719 chr2:79348721 nonsynonymous SNV 0.317 1 23 hm5C_associated_SNPs_54249 0 0 0 0 2 REG1A chr2:79348688 3'AG 79348688 Downstream 34bp
chr2 79348721 79348721 1 + G T LUAD 79348719 + 79348699 79348739 41 CAGACAGAGTTGCCCCAGGCCCGGATCAGCTGCCCAGAAGG CAGACAGAGTTGCCCCAGGCCCTGATCAGCTGCCCAGAAGG < 41bp 0.802412249015629 0.471657847642274 0.29466376 0.06828874 prediction 0.604824498031259 Functional Loss - REG1A ENSG00000115386 CDS Human protein_coding chr2:79348719 chr2:79348721 nonsynonymous SNV 0.317 1 23 hm5C_associated_SNPs_54249 0 0 0 0 2 REG1A chr2:79348806 5'GT 79348806 Upstream 86bp
chr18 44013374 44013374 1 + G T STAD 44013372 + 44013352 44013392 41 CCTGCAGTTCCAGGACGTCACAGGTCCCTCCTTCCTACCTC CCTGCAGTTCCAGGACGTCACATGTCCCTCCTTCCTACCTC < 41bp 0.802380459647534 0.463914128894099 0.74490154 0.50779426 prediction 0.604760919295068 Functional Loss - RNF165 ENSG00000141622 CDS Human protein_coding chr18:44013372 chr18:44013374 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_54252 0 0 0 0 1 RNF165 chr18:44013468 5'GT 44013468 Upstream 95bp
chr16 67229844 67229844 1 + G T PAAD 67229842 + 67229822 67229862 41 AGCAGCAGCAGCAACAGTAACAGCAGCAGTTCGTCCGGACC AGCAGCAGCAGCAACAGTAACATCAGCAGTTCGTCCGGACC < 41bp 0.833485627018305 0.531108231304196 0.45598167 0.100388885 prediction 0.604754791428217 Functional Loss - E2F4 ENSG00000205250 CDS Human protein_coding chr16:67229842 chr16:67229844 nonsynonymous SNV 0.350 1 23 hm5C_associated_SNPs_54253 0 0 1 0 1 E2F4 chr16:67229909 5'GT 67229909 Upstream 66bp
chr12 52309893 52309893 1 + G T rs187902433 52309891 + 52309871 52309911 41 ACCCGAGAGTGGGCACCAAGCGGTACATGGCACCCGAGGTG ACCCGAGAGTGGGCACCAAGCGTTACATGGCACCCGAGGTG < 41bp 0.841134682529782 0.538764330582759 0.5073391 0.2975034 prediction 0.604740703894047 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309891 chr12:52309893 synonymous SNV . 0 23 hm5C_associated_SNPs_54254 1 0 0 0 1 ACVRL1 chr12:52309820 3'AG 52309820 Downstream 74bp
chrX 154348405 154348405 1 + G T UCEC 154348402 + 154348382 154348422 41 AAGAAAAGGAAGAGCTTATGCAAGAACTTTCTTCTCTAGAA AAGAAAAGGAAGAGCTTATGCAATAACTTTCTTCTCTAGAA < 41bp 0.802362870100396 0.459455046524039 0.35361618 0.08400303 prediction 0.604725740200792 Functional Loss - BRCC3 ENSG00000185515 CDS Human protein_coding chrX:154348402 chrX:154348405 stopgain 1.000 1 24 hm5C_associated_SNPs_54256 0 0 1 0 1 BRCC3 chrX:154348443 5'GT 154348443 Upstream 39bp
chr19 39114771 39114771 1 + G T CESC 39114769 + 39114749 39114789 41 CGGTCACCGCCCAGATCCTGCTGAAGGCCCTCACCAACTTG CGGTCACCGCCCAGATCCTGCTTAAGGCCCTCACCAACTTG < 41bp 0.802357152230774 0.477308671690379 0.12077883 0.12682801 prediction 0.604714304461548 Functional Loss - EIF3K ENSG00000178982 CDS Human protein_coding chr19:39114769 chr19:39114771 synonymous SNV . 0 23 hm5C_associated_SNPs_54257 0 0 1 0 2 EIF3K chr19:39114717 3'AG 39114717 Downstream 55bp
chr19 39114771 39114771 1 + G T CESC 39114769 + 39114749 39114789 41 CGGTCACCGCCCAGATCCTGCTGAAGGCCCTCACCAACTTG CGGTCACCGCCCAGATCCTGCTTAAGGCCCTCACCAACTTG < 41bp 0.802357152230774 0.477308671690379 0.12077883 0.12682801 prediction 0.604714304461548 Functional Loss - EIF3K ENSG00000178982 CDS Human protein_coding chr19:39114769 chr19:39114771 synonymous SNV . 0 23 hm5C_associated_SNPs_54257 0 0 1 0 2 EIF3K chr19:39114837 5'GT 39114837 Upstream 67bp
chr4 170634272 170634272 1 + G T SARC 170634269 + 170634249 170634289 41 AGAAGGTATCGTTGGCAGTTCTCGGGTGTGTTTTGCACAGC AGAAGGTATCGTTGGCAGTTCTCTGGTGTGTTTTGCACAGC < 41bp 0.802344184150058 0.443043137199563 0.19273698 0.23924237 prediction 0.604688368300116 Functional Loss - CLCN3 ENSG00000109572 CDS Human protein_coding chr4:170634269 chr4:170634272 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_54259 0 0 1 0 1 CLCN3 chr4:170634230 3'AG 170634230 Downstream 43bp
chr11 209437 209437 1 + G T BRCA 209434 + 209414 209454 41 CGGAGCTGCTGGTCTCCGTCCTGGAACAGGGCTTGCCACCC CGGAGCTGCTGGTCTCCGTCCTGTAACAGGGCTTGCCACCC < 41bp 0.88472880832393 0.582394449201234 0.20377558 0.061531723 prediction 0.604668718245393 Functional Loss - RIC8A ENSG00000177963 CDS Human protein_coding chr11:209434 chr11:209437 stopgain 1.000 0 24 hm5C_associated_SNPs_54260 0 0 1 0 1 RIC8A chr11:209407 3'AG 209407 Downstream 31bp
chr10 118355776 118355776 1 + G T LUSC 118355774 + 118355754 118355794 41 TTCACCTCATTGGCCACAGCCTGGGAGCCCACGTGGCTGGA TTCACCTCATTGGCCACAGCCTTGGAGCCCACGTGGCTGGA < 41bp 0.856182338340709 0.553873989402641 0.8537946 0.03688711 prediction 0.604616697876136 Functional Loss - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118355774 chr10:118355776 synonymous SNV . 0 23 hm5C_associated_SNPs_54264 0 0 0 0 2 PNLIPRP1 chr10:118355726 3'AG 118355726 Downstream 51bp
chr10 118355776 118355776 1 + G T LUSC 118355774 + 118355754 118355794 41 TTCACCTCATTGGCCACAGCCTGGGAGCCCACGTGGCTGGA TTCACCTCATTGGCCACAGCCTTGGAGCCCACGTGGCTGGA < 41bp 0.856182338340709 0.553873989402641 0.8537946 0.03688711 prediction 0.604616697876136 Functional Loss - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118355774 chr10:118355776 synonymous SNV . 0 23 hm5C_associated_SNPs_54264 0 0 0 0 2 PNLIPRP1 chr10:118355834 5'GT 118355834 Upstream 59bp
chr7 128851580 128851580 1 + G T UCEC 128851578 + 128851558 128851598 41 GGAGAGGAGCCATACTGCCCCAGGATATTTCTGTCACCCCT GGAGAGGAGCCATACTGCCCCATGATATTTCTGTCACCCCT < 41bp 0.834970148959689 0.532662195644087 0.53657454 0.06568405 prediction 0.604615906631204 Functional Loss - SMO ENSG00000128602 CDS Human protein_coding chr7:128851578 chr7:128851580 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_54265 0 0 1 0 1 SMO chr7:128851611 5'GT 128851611 Upstream 32bp
chr10 99211645 99211645 1 + G T SKCM 99211643 + 99211623 99211663 41 CCTTTGAGCCTGTCTACTGGCTGGTAGACAACGTGATCCGC CCTTTGAGCCTGTCTACTGGCTTGTAGACAACGTGATCCGC < 41bp 0.838209293478831 0.535901517381421 0.2516976 0.08943537 prediction 0.60461555219482 Functional Loss - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99211643 chr10:99211645 synonymous SNV . 0 23 hm5C_associated_SNPs_54266 0 0 1 0 1 ZDHHC16 chr10:99211675 5'GT 99211675 Upstream 31bp
chr19 36207122 36207122 1 + G T ESCA 36207119 + 36207099 36207139 41 CCCGGCCCCTCCTGCTCGGTCTCGGCCCTATGCGTGCTCTG CCCGGCCCCTCCTGCTCGGTCTCTGCCCTATGCGTGCTCTG < 41bp 0.802305579848193 0.414481829725458 0.068850964 0.011291742 prediction 0.604611159696386 Functional Loss - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36207119 chr19:36207122 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_54267 0 0 0 0 2 ZBTB32 chr19:36207035 3'AG 36207035 Downstream 88bp
chr19 36207122 36207122 1 + G T ESCA 36207119 + 36207099 36207139 41 CCCGGCCCCTCCTGCTCGGTCTCGGCCCTATGCGTGCTCTG CCCGGCCCCTCCTGCTCGGTCTCTGCCCTATGCGTGCTCTG < 41bp 0.802305579848193 0.414481829725458 0.068850964 0.011291742 prediction 0.604611159696386 Functional Loss - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36207119 chr19:36207122 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_54267 0 0 0 0 2 ZBTB32 chr19:36207199 5'GT 36207199 Upstream 78bp
chr1 236918429 236918429 1 + G T BRCA 236918427 + 236918407 236918447 41 ATAAGAACAACATCGACAAGCTGGAGGGAGACCATCAGCTC ATAAGAACAACATCGACAAGCTTGAGGGAGACCATCAGCTC < 41bp 0.805201991650578 0.50290536430298 0.22192144 0.105743796 prediction 0.604593254695196 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236918427 chr1:236918429 synonymous SNV . 0 23 hm5C_associated_SNPs_54268 0 0 0 0 1 ACTN2 chr1:236918498 5'GT 236918498 Upstream 70bp
chrX 48116711 48116711 1 + G T LGG 48116709 + 48116689 48116729 41 GACACCTTTGCAAAGAGACCCAGGGATGATGCTAAAGCATC GACACCTTTGCAAAGAGACCCATGGATGATGCTAAAGCATC < 41bp 0.802275888471106 0.478092017568552 0.9253401 0.8831643 prediction 0.604551776942213 Functional Loss - SSX1 ENSG00000126752 CDS Human protein_coding chrX:48116709 chrX:48116711 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_54270 0 0 1 0 2 SSX1 chrX:48116657 3'AG 48116657 Downstream 55bp
chrX 48116711 48116711 1 + G T LGG 48116709 + 48116689 48116729 41 GACACCTTTGCAAAGAGACCCAGGGATGATGCTAAAGCATC GACACCTTTGCAAAGAGACCCATGGATGATGCTAAAGCATC < 41bp 0.802275888471106 0.478092017568552 0.9253401 0.8831643 prediction 0.604551776942213 Functional Loss - SSX1 ENSG00000126752 CDS Human protein_coding chrX:48116709 chrX:48116711 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_54270 0 0 1 0 2 SSX1 chrX:48116745 5'GT 48116745 Upstream 35bp
chr22 29706700 29706700 1 + G T UCEC 29706697 + 29706677 29706717 41 TGGAGCATTACCTGGACAAGCACGACCCGTGCCGCTGCTCC TGGAGCATTACCTGGACAAGCACTACCCGTGCCGCTGCTCC < 41bp 0.802251636940947 0.428327719123054 0.23698121 0.20692891 prediction 0.604503273881894 Functional Loss - GAS2L1 ENSG00000185340 CDS Human protein_coding chr22:29706697 chr22:29706700 nonsynonymous SNV 0.944 4 24 hm5C_associated_SNPs_54272 0 0 0 0 2 GAS2L1 chr22:29706628 3'AG 29706628 Downstream 73bp
chr22 29706700 29706700 1 + G T UCEC 29706697 + 29706677 29706717 41 TGGAGCATTACCTGGACAAGCACGACCCGTGCCGCTGCTCC TGGAGCATTACCTGGACAAGCACTACCCGTGCCGCTGCTCC < 41bp 0.802251636940947 0.428327719123054 0.23698121 0.20692891 prediction 0.604503273881894 Functional Loss - GAS2L1 ENSG00000185340 CDS Human protein_coding chr22:29706697 chr22:29706700 nonsynonymous SNV 0.944 4 24 hm5C_associated_SNPs_54272 0 0 0 0 2 GAS2L1 chr22:29706724 5'GT 29706724 Upstream 25bp
chr6 33365888 33365888 1 + G T BRCA 33365885 + 33365865 33365905 41 CCCTTCCCAGCTGCCTCTCTCAGGAAGCAGACTCAAGAGGA CCCTTCCCAGCTGCCTCTCTCAGTAAGCAGACTCAAGAGGA < 41bp 0.887485595084573 0.585237745016291 0.9291903 0.672212 prediction 0.604495700136564 Functional Loss - KIFC1 ENSG00000237649 CDS Human protein_coding chr6:33365885 chr6:33365888 nonsynonymous SNV 0.178 1 24 hm5C_associated_SNPs_54273 0 0 1 0 2 KIFC1 chr6:33365806 3'AG 33365806 Downstream 83bp
chr6 33365888 33365888 1 + G T BRCA 33365885 + 33365865 33365905 41 CCCTTCCCAGCTGCCTCTCTCAGGAAGCAGACTCAAGAGGA CCCTTCCCAGCTGCCTCTCTCAGTAAGCAGACTCAAGAGGA < 41bp 0.887485595084573 0.585237745016291 0.9291903 0.672212 prediction 0.604495700136564 Functional Loss - KIFC1 ENSG00000237649 CDS Human protein_coding chr6:33365885 chr6:33365888 nonsynonymous SNV 0.178 1 24 hm5C_associated_SNPs_54273 0 0 1 0 2 KIFC1 chr6:33365943 5'GT 33365943 Upstream 56bp
chrX 153780352 153780352 1 + G T THYM 153780350 + 153780330 153780370 41 TGCTGCACCTGCCTTCAGAACAGGGCGCTCCTGAGACCCTC TGCTGCACCTGCCTTCAGAACATGGCGCTCCTGAGACCCTC < 41bp 0.852579264664096 0.550349059581802 0.83599997 0.22045812 prediction 0.604460410164587 Functional Loss - IKBKG ENSG00000073009 CDS Human other chrX:153780350 chrX:153780352 nonsynonymous SNV 0.095 1 23 hm5C_associated_SNPs_54276 0 0 1 0 1 IKBKG chrX:153780404 5'GT 153780404 Upstream 53bp
chr2 102805702 102805702 1 + G T READ 102805700 + 102805680 102805720 41 TCATACAGTCTAGAATTCACCAGGACGAGACTTGGATTTTG TCATACAGTCTAGAATTCACCATGACGAGACTTGGATTTTG < 41bp 0.802215710563784 0.487556657216084 0.36544695 0.0075962543 prediction 0.604431421127568 Functional Loss - IL1RL2 ENSG00000115598 CDS Human protein_coding chr2:102805700 chr2:102805702 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_54278 0 0 0 0 1 IL1RL2 chr2:102805770 5'GT 102805770 Upstream 69bp
chr20 2637430 2637430 1 + G T SARC 2637427 + 2637407 2637447 41 CACACACATCCAGAGGTGCCCACGAGTGTATTCGGGGAGAA CACACACATCCAGAGGTGCCCACTAGTGTATTCGGGGAGAA < 41bp 0.877783525258509 0.575587793454474 0.26429912 0.08554271 prediction 0.604391463608069 Functional Loss - NOP56 ENSG00000101361 CDS Human protein_coding chr20:2637427 chr20:2637430 synonymous SNV . 0 24 hm5C_associated_SNPs_54279 0 0 1 1 1 NOP56 chr20:2637420 3'AG 2637420 Downstream 11bp
chr15 22969309 22969309 1 + G T STAD 22969306 + 22969286 22969326 41 AGGATCACCCTGCACGTCTTCTGGGAGCTCAACTATGACTT AGGATCACCCTGCACGTCTTCTGTGAGCTCAACTATGACTT < 41bp 0.802192094114069 0.431365105248502 0.37279335 0.050008535 prediction 0.604384188228138 Functional Loss - CYFIP1 ENSG00000068793 CDS Human other chr15:22969306 chr15:22969309 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_54280 0 0 1 0 1 CYFIP1 chr15:22969362 5'GT 22969362 Upstream 54bp
chr19 55855091 55855091 1 + G T UCEC 55855089 + 55855069 55855109 41 GCTGCTGGTGGGCTGCATTGCAGAGCTGCGGGAGGCAGATG GCTGCTGGTGGGCTGCATTGCATAGCTGCGGGAGGCAGATG < 41bp 0.802167024423551 0.463882307532559 0.89529777 0.39472198 prediction 0.604334048847102 Functional Loss - KMT5C ENSG00000133247 CDS Human protein_coding chr19:55855089 chr19:55855091 stopgain 0.733 0 23 hm5C_associated_SNPs_54282 0 0 1 0 1 KMT5C chr19:55855048 3'AG 55855048 Downstream 44bp
chr3 183994316 183994316 1 + G T PAAD 183994313 + 183994293 183994333 41 CTTCGGGATGAAGACGCACCCGAGACCCCCGTAGAGGGCGG CTTCGGGATGAAGACGCACCCGATACCCCCGTAGAGGGCGG < 41bp 0.802122651564906 0.447855426808033 0.8312852 0.112974584 prediction 0.604245303129813 Functional Loss - ECE2 ENSG00000145194 CDS Human protein_coding chr3:183994313 chr3:183994316 nonsynonymous SNV 0.979 1 24 hm5C_associated_SNPs_54283 0 0 0 0 1 ECE2 chr3:183994355 5'GT 183994355 Upstream 40bp
chr1 10477123 10477123 1 + G T STAD 10477121 + 10477101 10477141 41 GCAAAAAGCTGAAGGGTCCCCAGAAGTTCCAGTTTGATGGT GCAAAAAGCTGAAGGGTCCCCATAAGTTCCAGTTTGATGGT < 41bp 0.836127560713037 0.534007572072831 0.8417783 0.26314163 prediction 0.604239977280411 Functional Loss - PGD ENSG00000142657 CDS Human protein_coding chr1:10477121 chr1:10477123 nonsynonymous SNV 0.017 0 23 hm5C_associated_SNPs_54285 0 0 1 0 2 PGD chr1:10477044 3'AG 10477044 Downstream 80bp
chr1 10477123 10477123 1 + G T STAD 10477121 + 10477101 10477141 41 GCAAAAAGCTGAAGGGTCCCCAGAAGTTCCAGTTTGATGGT GCAAAAAGCTGAAGGGTCCCCATAAGTTCCAGTTTGATGGT < 41bp 0.836127560713037 0.534007572072831 0.8417783 0.26314163 prediction 0.604239977280411 Functional Loss - PGD ENSG00000142657 CDS Human protein_coding chr1:10477121 chr1:10477123 nonsynonymous SNV 0.017 0 23 hm5C_associated_SNPs_54285 0 0 1 0 2 PGD chr1:10477174 5'GT 10477174 Upstream 52bp
chr12 21331906 21331906 1 + G T LUSC 21331903 + 21331883 21331923 41 GTCCAATCATTGGCTTTACCCTGGGATCTCTGTTTTCTAAA GTCCAATCATTGGCTTTACCCTGTGATCTCTGTTTTCTAAA < 41bp 0.802111308925883 0.441481758592465 0.6033173 0.06620982 prediction 0.604222617851766 Functional Loss - SLCO1B1 ENSG00000134538 CDS Human protein_coding chr12:21331903 chr12:21331906 stopgain 0.081 0 24 hm5C_associated_SNPs_54286 0 0 0 0 2 SLCO1B1 chr12:21331856 3'AG 21331856 Downstream 51bp
chr12 21331906 21331906 1 + G T LUSC 21331903 + 21331883 21331923 41 GTCCAATCATTGGCTTTACCCTGGGATCTCTGTTTTCTAAA GTCCAATCATTGGCTTTACCCTGTGATCTCTGTTTTCTAAA < 41bp 0.802111308925883 0.441481758592465 0.6033173 0.06620982 prediction 0.604222617851766 Functional Loss - SLCO1B1 ENSG00000134538 CDS Human protein_coding chr12:21331903 chr12:21331906 stopgain 0.081 0 24 hm5C_associated_SNPs_54286 0 0 0 0 2 SLCO1B1 chr12:21331954 5'GT 21331954 Upstream 49bp
chr15 41148117 41148117 1 + G T UCEC 41148114 + 41148094 41148134 41 CTGCGTGGACCTGCCAGACACAGGACTCTGCAAGGAGAGCA CTGCGTGGACCTGCCAGACACAGTACTCTGCAAGGAGAGCA < 41bp 0.884913097216993 0.582814650829927 0.8871715 0.6316185 prediction 0.604196892774132 Functional Loss - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41148114 chr15:41148117 nonsynonymous SNV 0.889 4 24 hm5C_associated_SNPs_54288 0 0 0 0 1 SPINT1 chr15:41148090 3'AG 41148090 Downstream 28bp
chr3 37988590 37988590 1 + G T UCEC 37988588 + 37988568 37988608 41 TTAAAGAAGCAGAGGAGCCGCAGCATCCTTAGCTCCTTCTT TTAAAGAAGCAGAGGAGCCGCATCATCCTTAGCTCCTTCTT < 41bp 0.827663891598422 0.525592527579365 0.12455547 0.06685543 prediction 0.604142728038114 Functional Loss - CTDSPL ENSG00000144677 CDS Human protein_coding chr3:37988588 chr3:37988590 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_54289 0 0 1 0 1 CTDSPL chr3:37988548 3'AG 37988548 Downstream 43bp
chr21 34805074 34805074 1 - C A UCEC 34805076 - 34805056 34805096 41 CAGGCTCCTGCCAGCACCGACAGCAACGAAAATGTTCCCAC CAGGCTCCTGCCAGCACCGACATCAACGAAAATGTTCCCAC < 41bp 0.81457288293125 0.512523099034832 0.21047479 0.064404875 prediction 0.604099567792836 Functional Loss - IFNGR2 ENSG00000159128 CDS Human protein_coding chr21:34805076 chr21:34805074 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_54291 0 0 1 0 1 IFNGR2 chr21:34805109 3'AG 34805109 Downstream 36bp
chr17 41165103 41165103 1 + G T COAD 41165100 + 41165080 41165120 41 CCAAGATCCCCCTGGTATTCCGAGGACACACCCAGCAGGAC CCAAGATCCCCCTGGTATTCCGATGACACACCCAGCAGGAC < 41bp 0.802048474853569 0.409381147877495 0.8114166 0.2137287 prediction 0.604096949707139 Functional Loss - IFI35 ENSG00000068079 CDS Human protein_coding chr17:41165100 chr17:41165103 stopgain 0.679 0 24 hm5C_associated_SNPs_54292 0 0 1 0 1 IFI35 chr17:41165064 3'AG 41165064 Downstream 40bp
chr1 111857983 111857983 1 + G T CESC 111857980 + 111857960 111858000 41 GCCAGTATGAGTTTGACGGGCTGGACTTTGACTGGGAGTAC GCCAGTATGAGTTTGACGGGCTGTACTTTGACTGGGAGTAC < 41bp 0.802033524351222 0.444726501913781 0.22588465 0.14073956 prediction 0.604067048702443 Functional Loss - CHIA ENSG00000134216 CDS Human protein_coding chr1:111857980 chr1:111857983 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_54294 0 0 0 0 2 CHIA chr1:111857892 3'AG 111857892 Downstream 92bp
chr1 111857983 111857983 1 + G T CESC 111857980 + 111857960 111858000 41 GCCAGTATGAGTTTGACGGGCTGGACTTTGACTGGGAGTAC GCCAGTATGAGTTTGACGGGCTGTACTTTGACTGGGAGTAC < 41bp 0.802033524351222 0.444726501913781 0.22588465 0.14073956 prediction 0.604067048702443 Functional Loss - CHIA ENSG00000134216 CDS Human protein_coding chr1:111857980 chr1:111857983 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_54294 0 0 0 0 2 CHIA chr1:111858057 5'GT 111858057 Upstream 75bp
chr15 58855754 58855754 1 + A C OV 58855750 + 58855730 58855770 41 CGTATTCCTTTCTTATCACGCTGGATGTGGATATCGGCGAG CGTATTCCTTTCTTATCACGCTGGCTGTGGATATCGGCGAG < 41bp 0.802030415578853 0.409089068547104 0.2156229 0.17345661 prediction 0.604060831157707 Functional Loss - LIPC ENSG00000166035 CDS Human protein_coding chr15:58855750 chr15:58855754 nonsynonymous SNV 0.054 3 25 hm5C_associated_SNPs_54297 0 0 0 0 1 LIPC chr15:58855704 3'AG 58855704 Downstream 51bp
chr4 3422412 3422412 1 + G T UCEC 3422410 + 3422390 3422430 41 GCCTGTGTCGCCGAGAGTCGCAGGGCTCTGTGTCCTCTGCG GCCTGTGTCGCCGAGAGTCGCATGGCTCTGTGTCCTCTGCG < 41bp 0.827407871280659 0.525380778282164 0.9388696 0.5223008 prediction 0.60405418599699 Functional Loss - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3422410 chr4:3422412 nonsynonymous SNV 0.632 3 23 hm5C_associated_SNPs_54298 0 0 1 0 2 RGS12 chr4:3422369 3'AG 3422369 Downstream 44bp
chr4 3422412 3422412 1 + G T UCEC 3422410 + 3422390 3422430 41 GCCTGTGTCGCCGAGAGTCGCAGGGCTCTGTGTCCTCTGCG GCCTGTGTCGCCGAGAGTCGCATGGCTCTGTGTCCTCTGCG < 41bp 0.827407871280659 0.525380778282164 0.9388696 0.5223008 prediction 0.60405418599699 Functional Loss - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3422410 chr4:3422412 nonsynonymous SNV 0.632 3 23 hm5C_associated_SNPs_54298 0 0 1 0 2 RGS12 chr4:3422445 5'GT 3422445 Upstream 34bp
chr12 100717379 100717379 1 + G T UCEC 100717376 + 100717356 100717396 41 CATGAAAAACGCTTTGATACCAAGAATTAAAAATGCTTGTC CATGAAAAACGCTTTGATACCAATAATTAAAAATGCTTGTC < 41bp 0.86020350162707 0.558197369505701 0.84425116 0.35183755 prediction 0.604012264242739 Functional Loss - SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100717376 chr12:100717379 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54301 0 0 1 0 2 SCYL2 chr12:100717303 3'AG 100717303 Downstream 77bp
chr12 100717379 100717379 1 + G T UCEC 100717376 + 100717356 100717396 41 CATGAAAAACGCTTTGATACCAAGAATTAAAAATGCTTGTC CATGAAAAACGCTTTGATACCAATAATTAAAAATGCTTGTC < 41bp 0.86020350162707 0.558197369505701 0.84425116 0.35183755 prediction 0.604012264242739 Functional Loss - SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100717376 chr12:100717379 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54301 0 0 1 0 2 SCYL2 chr12:100717416 5'GT 100717416 Upstream 38bp
chr10 135044254 135044254 1 + G T rs142938992 135044252 + 135044232 135044272 41 TGGGCGACAACGGGCGCAAACGGCCTCGCCGCCGCTCCCCG TGGGCGACAACGGGCGCAAACGTCCTCGCCGCCGCTCCCCG < 41bp 0.80199561874353 0.492869180901859 0.89357555 0.77717614 prediction 0.603991237487061 Functional Loss - UTF1 ENSG00000171794 CDS Human protein_coding chr10:135044252 chr10:135044254 synonymous SNV . 0 23 hm5C_associated_SNPs_54303 0 0 0 0 1 UTF1 chr10:135044342 5'GT 135044342 Upstream 89bp
chr19 51628912 51628912 1 + G T GBM 51628909 + 51628889 51628929 41 ACCCTGGAGTCCGGCTGCCCCCAGAATCTGACCTGCTCTGT ACCCTGGAGTCCGGCTGCCCCCATAATCTGACCTGCTCTGT < 41bp 0.801984162896292 0.425366471065616 0.66106415 0.31139946 prediction 0.603968325792584 Functional Loss - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51628909 chr19:51628912 nonsynonymous SNV 0.014 0 24 hm5C_associated_SNPs_54306 0 0 0 0 1 SIGLEC9 chr19:51628854 3'AG 51628854 Downstream 59bp
chr12 9986031 9986031 1 + G T UCEC 9986028 + 9986008 9986048 41 TAATAAGGACCTTTGTGCTTCGAGATCTGCAGACCAGACAG TAATAAGGACCTTTGTGCTTCGATATCTGCAGACCAGACAG < 41bp 0.857508158466904 0.555526971772146 0.7161313 0.22077426 prediction 0.603962373389516 Functional Loss - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9986028 chr12:9986031 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_54307 0 0 0 0 1 KLRF1 chr12:9986048 5'GT 9986048 Upstream 18bp
chr17 75196731 75196731 1 + G T STAD 75196729 + 75196709 75196749 41 GGTCCTTCAGGATTACTACGCGGGAGGCTGGCATCATCACG GGTCCTTCAGGATTACTACGCGTGAGGCTGGCATCATCACG < 41bp 0.835548692325013 0.533575432078732 0.9079273 0.3719321 prediction 0.603946520492563 Functional Loss - SEC14L1 ENSG00000129657 CDS Human protein_coding chr17:75196729 chr17:75196731 stopgain 0.983 1 23 hm5C_associated_SNPs_54309 0 0 1 0 1 SEC14L1 chr17:75196755 5'GT 75196755 Upstream 25bp
chr17 78023892 78023892 1 + G T UCEC 78023890 + 78023870 78023910 41 CTACCAAGCAGAGCCGAGCCCAGCGGCAGGAGCTGGGGGTG CTACCAAGCAGAGCCGAGCCCATCGGCAGGAGCTGGGGGTG < 41bp 0.801960992314067 0.451423220955701 0.9092442 0.52588415 prediction 0.603921984628133 Functional Loss - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78023890 chr17:78023892 nonsynonymous SNV 0.317 2 23 hm5C_associated_SNPs_54311 0 0 1 0 1 CCDC40 chr17:78023863 3'AG 78023863 Downstream 30bp
chr16 88737820 88737820 1 + G T rs186120887 88737818 + 88737798 88737838 41 CTTTCCTGGCCTCTTCAGATCAGGGTGGCTGTTCTTGGGTG CTTTCCTGGCCTCTTCAGATCATGGTGGCTGTTCTTGGGTG < 41bp 0.840861851004447 0.538902875923894 0.9481888 0.69039696 prediction 0.603917950161107 Functional Loss - SNAI3-AS1 ENSG00000260630 ncRNA_exonic Human antisense chr16:88737818 chr16:88737820 . . 0 23 hm5C_associated_SNPs_54312 0 0 0 0 1 SNAI3-AS1 chr16:88737873 5'GT 88737873 Upstream 54bp
chr17 78399393 78399393 1 + G T BLCA 78399390 + 78399370 78399410 41 CGCCTGACTTGCTGCTGCTGCAGGTTCCGGATCCCAGAGCC CGCCTGACTTGCTGCTGCTGCAGTTTCCGGATCCCAGAGCC < 41bp 0.801956643262268 0.42224745489569 0.8101193 0.5251561 prediction 0.603913286524536 Functional Loss - ENDOV ENSG00000173818 CDS Human protein_coding chr17:78399390 chr17:78399393 nonsynonymous SNV 0.632 0 24 hm5C_associated_SNPs_54314 0 0 0 0 1 ENDOV chr17:78399420 5'GT 78399420 Upstream 28bp
chrX 80532666 80532666 1 + G T SARC 80532663 + 80532643 80532683 41 TTTTCAATGAAAGCCAGTATCGCGGGGTAAGAAAACAATTT TTTTCAATGAAAGCCAGTATCGCTGGGTAAGAAAACAATTT < 41bp 0.862014174819161 0.560074990121228 0.94205964 0.15269983 prediction 0.603878369395865 Functional Loss - SH3BGRL ENSG00000131171 CDS Human protein_coding chrX:80532663 chrX:80532666 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_54316 0 0 0 0 1 SH3BGRL chrX:80532668 5'GT 80532668 Upstream 3bp
chr2 170592657 170592657 1 + G T UCEC 170592655 + 170592635 170592675 41 GTCTATGCTTTAGGTGGTTACAGAAAAGGGGCTCCAGCAGA GTCTATGCTTTAGGTGGTTACATAAAAGGGGCTCCAGCAGA < 41bp 0.801916482282768 0.495632180666051 0.37457064 0.23829085 prediction 0.603832964565536 Functional Loss - KLHL23;PHOSPHO2-KLHL23 ENSG00000213160 CDS Human protein_coding chr2:170592655 chr2:170592657 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_54318 0 0 1 0 1 KLHL23;PHOSPHO2-KLHL23 chr2:170592737 5'GT 170592737 Upstream 81bp
chr11 44219549 44219549 1 + G T GBM 44219547 + 44219527 44219567 41 TACTTGTCGTCTGGAATAATCAGAATAAAAACCCTCCAGAA TACTTGTCGTCTGGAATAATCATAATAAAAACCCTCCAGAA < 41bp 0.829659446002203 0.527743412512781 0.9038117 0.20689136 prediction 0.603832066978844 Functional Loss - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44219547 chr11:44219549 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_54319 0 0 0 0 1 EXT2 chr11:44219568 5'GT 44219568 Upstream 20bp
chr2 239353036 239353036 1 + G T STAD 239353033 + 239353013 239353053 41 CCTGACTCCTGATGTCCAGCCTCGATTCTCCCGGCGGCTCA CCTGACTCCTGATGTCCAGCCTCTATTCTCCCGGCGGCTCA < 41bp 0.883660335014874 0.58174665781264 0.42060214 0.64097893 prediction 0.603827354404469 Functional Loss - ASB1 ENSG00000065802 CDS Human protein_coding chr2:239353033 chr2:239353036 nonsynonymous SNV 0.713 0 24 hm5C_associated_SNPs_54320 0 0 1 0 1 ASB1 chr2:239352983 3'AG 239352983 Downstream 54bp
chr8 17142026 17142026 1 + A T HNSC 17142022 + 17142002 17142042 41 TCAGGCAAGATTGAAAGTAGCTGCACATGAAGCTGAGGAAG TCAGGCAAGATTGAAAGTAGCTGCTCATGAAGCTGAGGAAG < 41bp 0.801903665464439 0.486766053600023 0.34107417 0.13980463 prediction 0.603807330928877 Functional Loss - VPS37A ENSG00000155975 CDS Human protein_coding chr8:17142022 chr8:17142026 synonymous SNV . 0 25 hm5C_associated_SNPs_54321 0 0 1 0 2 VPS37A chr8:17141982 3'AG 17141982 Downstream 45bp
chr8 17142026 17142026 1 + A T HNSC 17142022 + 17142002 17142042 41 TCAGGCAAGATTGAAAGTAGCTGCACATGAAGCTGAGGAAG TCAGGCAAGATTGAAAGTAGCTGCTCATGAAGCTGAGGAAG < 41bp 0.801903665464439 0.486766053600023 0.34107417 0.13980463 prediction 0.603807330928877 Functional Loss - VPS37A ENSG00000155975 CDS Human protein_coding chr8:17142022 chr8:17142026 synonymous SNV . 0 25 hm5C_associated_SNPs_54321 0 0 1 0 2 VPS37A chr8:17142125 5'GT 17142125 Upstream 100bp
chr8 106810992 106810992 1 + G T LUSC 106810990 + 106810970 106811010 41 AGTCCTGTGGCATCTGGTATCGGAGTGAGCGGAATCTGCAG AGTCCTGTGGCATCTGGTATCGTAGTGAGCGGAATCTGCAG < 41bp 0.801827073571008 0.483113613895228 0.92021966 0.8681898 prediction 0.603654147142016 Functional Loss - ZFPM2 ENSG00000169946 CDS Human protein_coding chr8:106810990 chr8:106810992 synonymous SNV . 0 23 hm5C_associated_SNPs_54330 0 0 1 0 1 ZFPM2 chr8:106810952 3'AG 106810952 Downstream 41bp
chr1 156347929 156347929 1 + G T COAD 156347926 + 156347906 156347946 41 AGTTTGTGCTCCTTCATCTCCTGGGGGTGAGAGTCTGGGGA AGTTTGTGCTCCTTCATCTCCTGTGGGTGAGAGTCTGGGGA < 41bp 0.890466793036914 0.588652844829827 0.8197526 0.06263459 prediction 0.603627896414173 Functional Loss - RHBG ENSG00000132677 CDS Human protein_coding chr1:156347926 chr1:156347929 nonsynonymous SNV 0.297 3 24 hm5C_associated_SNPs_54332 0 0 1 0 1 RHBG chr1:156347931 5'GT 156347931 Upstream 3bp
chr2 178981028 178981028 1 + G T UCEC 178981025 + 178981005 178981045 41 CCCGATCATCTGGAAGTCACCGAGATGTTGAAGATGAAGAA CCCGATCATCTGGAAGTCACCGATATGTTGAAGATGAAGAA < 41bp 0.866998693779457 0.565195299157586 0.25202 0.03659281 prediction 0.603606789243742 Functional Loss - RBM45 ENSG00000155636 CDS Human protein_coding chr2:178981025 chr2:178981028 nonsynonymous SNV 0.990 5 24 hm5C_associated_SNPs_54334 0 0 0 0 2 RBM45 chr2:178980989 3'AG 178980989 Downstream 40bp
chr2 178981028 178981028 1 + G T UCEC 178981025 + 178981005 178981045 41 CCCGATCATCTGGAAGTCACCGAGATGTTGAAGATGAAGAA CCCGATCATCTGGAAGTCACCGATATGTTGAAGATGAAGAA < 41bp 0.866998693779457 0.565195299157586 0.25202 0.03659281 prediction 0.603606789243742 Functional Loss - RBM45 ENSG00000155636 CDS Human protein_coding chr2:178981025 chr2:178981028 nonsynonymous SNV 0.990 5 24 hm5C_associated_SNPs_54334 0 0 0 0 2 RBM45 chr2:178981111 5'GT 178981111 Upstream 84bp
chr11 65688402 65688402 1 + A T STAD 65688398 + 65688378 65688418 41 TGATGGGGAAGAGGAGACATCACAACCCCCACCCCAGGCCA TGATGGGGAAGAGGAGACATCACATCCCCCACCCCAGGCCA < 41bp 0.816021036228444 0.514220384929249 0.09173074 0.047778994 prediction 0.60360130259839 Functional Loss - DRAP1 ENSG00000175550 CDS Human protein_coding chr11:65688398 chr11:65688402 nonsynonymous SNV 0.077 1 25 hm5C_associated_SNPs_54335 0 0 1 0 2 DRAP1 chr11:65688355 3'AG 65688355 Downstream 48bp
chr11 65688402 65688402 1 + A T STAD 65688398 + 65688378 65688418 41 TGATGGGGAAGAGGAGACATCACAACCCCCACCCCAGGCCA TGATGGGGAAGAGGAGACATCACATCCCCCACCCCAGGCCA < 41bp 0.816021036228444 0.514220384929249 0.09173074 0.047778994 prediction 0.60360130259839 Functional Loss - DRAP1 ENSG00000175550 CDS Human protein_coding chr11:65688398 chr11:65688402 nonsynonymous SNV 0.077 1 25 hm5C_associated_SNPs_54335 0 0 1 0 2 DRAP1 chr11:65688443 5'GT 65688443 Upstream 42bp
chr6 170179373 170179373 1 + A C COAD 170179369 + 170179349 170179389 41 CTGTTTGTGGGAAGAATGCGCATGAGTATCAGCAGTACCTA CTGTTTGTGGGAAGAATGCGCATGCGTATCAGCAGTACCTA < 41bp 0.801781909693303 0.431895810588399 0.13934109 0.24166599 prediction 0.603563819386606 Functional Loss - ERMARD ENSG00000130023 CDS Human protein_coding chr6:170179369 chr6:170179373 nonsynonymous SNV 0.084 3 25 hm5C_associated_SNPs_54336 0 0 1 0 2 ERMARD chr6:170179278 3'AG 170179278 Downstream 96bp
chr6 170179373 170179373 1 + A C COAD 170179369 + 170179349 170179389 41 CTGTTTGTGGGAAGAATGCGCATGAGTATCAGCAGTACCTA CTGTTTGTGGGAAGAATGCGCATGCGTATCAGCAGTACCTA < 41bp 0.801781909693303 0.431895810588399 0.13934109 0.24166599 prediction 0.603563819386606 Functional Loss - ERMARD ENSG00000130023 CDS Human protein_coding chr6:170179369 chr6:170179373 nonsynonymous SNV 0.084 3 25 hm5C_associated_SNPs_54336 0 0 1 0 2 ERMARD chr6:170179391 5'GT 170179391 Upstream 19bp
chr1 176760523 176760523 1 + A C SKCM 176760519 + 176760499 176760539 41 CTAAAGAGGGCCTGTGGACCCAGGAGTTTAAGTTGTGTGAG CTAAAGAGGGCCTGTGGACCCAGGCGTTTAAGTTGTGTGAG < 41bp 0.872338281089642 0.570569700034674 0.9152122 0.8619057 prediction 0.603537162109935 Functional Loss - PAPPA2 ENSG00000116183 CDS Human protein_coding chr1:176760519 chr1:176760523 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_54341 0 0 0 1 2 PAPPA2 chr1:176760483 3'AG 176760483 Downstream 41bp
chr1 176760523 176760523 1 + A C SKCM 176760519 + 176760499 176760539 41 CTAAAGAGGGCCTGTGGACCCAGGAGTTTAAGTTGTGTGAG CTAAAGAGGGCCTGTGGACCCAGGCGTTTAAGTTGTGTGAG < 41bp 0.872338281089642 0.570569700034674 0.9152122 0.8619057 prediction 0.603537162109935 Functional Loss - PAPPA2 ENSG00000116183 CDS Human protein_coding chr1:176760519 chr1:176760523 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_54341 0 0 0 1 2 PAPPA2 chr1:176760618 5'GT 176760618 Upstream 96bp
chr1 118477298 118477298 1 + G T LUAD 118477295 + 118477275 118477315 41 GCTAGGAGGCAGACTGGCATCTGGGTCCAAGGTGAGCCTTT GCTAGGAGGCAGACTGGCATCTGTGTCCAAGGTGAGCCTTT < 41bp 0.869709767196743 0.567948586505338 0.38431942 0.09115031 prediction 0.603522361382809 Functional Loss - WDR3 ENSG00000065183 CDS Human protein_coding chr1:118477295 chr1:118477298 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54344 0 0 1 0 1 WDR3 chr1:118477305 5'GT 118477305 Upstream 8bp
chr10 3158984 3158984 1 + G T LUAD 3158982 + 3158962 3159002 41 CATTAGATCAAAGAAATCGGCTGGACAGATGTCGGGGGCTG CATTAGATCAAAGAAATCGGCTTGACAGATGTCGGGGGCTG < 41bp 0.801736572816585 0.485013509002175 0.22977251 0.15411618 prediction 0.603473145633169 Functional Loss - PFKP ENSG00000067057 CDS Human protein_coding chr10:3158982 chr10:3158984 nonsynonymous SNV 0.971 4 23 hm5C_associated_SNPs_54346 0 0 1 0 2 PFKP chr10:3158968 3'AG 3158968 Downstream 17bp
chr10 3158984 3158984 1 + G T LUAD 3158982 + 3158962 3159002 41 CATTAGATCAAAGAAATCGGCTGGACAGATGTCGGGGGCTG CATTAGATCAAAGAAATCGGCTTGACAGATGTCGGGGGCTG < 41bp 0.801736572816585 0.485013509002175 0.22977251 0.15411618 prediction 0.603473145633169 Functional Loss - PFKP ENSG00000067057 CDS Human protein_coding chr10:3158982 chr10:3158984 nonsynonymous SNV 0.971 4 23 hm5C_associated_SNPs_54346 0 0 1 0 2 PFKP chr10:3159038 5'GT 3159038 Upstream 55bp
chr1 57378115 57378115 1 + G T UCEC 57378112 + 57378092 57378132 41 AGGTGCTGCGGCACACAAGCCTGGGGCCTCTGGAGGCCAAG AGGTGCTGCGGCACACAAGCCTGTGGCCTCTGGAGGCCAAG < 41bp 0.889401968426067 0.587695356665882 0.74506253 0.2525079 prediction 0.60341322352037 Functional Loss - C8A ENSG00000157131 CDS Human protein_coding chr1:57378112 chr1:57378115 nonsynonymous SNV 0.248 4 24 hm5C_associated_SNPs_54349 0 0 1 0 1 C8A chr1:57378076 3'AG 57378076 Downstream 40bp
chr8 27311760 27311760 1 + G T UCEC 27311757 + 27311737 27311777 41 GTGCGGGCCGTGCTGGAGCTCAAGAATGAGCTCTGTCAGCT GTGCGGGCCGTGCTGGAGCTCAATAATGAGCTCTGTCAGCT < 41bp 0.801678233457437 0.435979531108525 0.7825671 0.15094095 prediction 0.603356466914875 Functional Loss - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27311757 chr8:27311760 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_54351 0 0 1 0 2 PTK2B chr8:27311671 3'AG 27311671 Downstream 90bp
chr8 27311760 27311760 1 + G T UCEC 27311757 + 27311737 27311777 41 GTGCGGGCCGTGCTGGAGCTCAAGAATGAGCTCTGTCAGCT GTGCGGGCCGTGCTGGAGCTCAATAATGAGCTCTGTCAGCT < 41bp 0.801678233457437 0.435979531108525 0.7825671 0.15094095 prediction 0.603356466914875 Functional Loss - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27311757 chr8:27311760 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_54351 0 0 1 0 2 PTK2B chr8:27311808 5'GT 27311808 Upstream 49bp
chr1 226252135 226252135 1 + A T GBM 226252131 + 226252111 226252151 41 AACTGGCTACAAAAGCCGCTCGCAAGAGTGCGCCCTCTACT AACTGGCTACAAAAGCCGCTCGCATGAGTGCGCCCTCTACT < 41bp 0.813040737944063 0.511376031552865 0.68887746 0.60876834 prediction 0.603329412782396 Functional Loss - H3F3A ENSG00000163041 CDS Human protein_coding chr1:226252131 chr1:226252135 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_54353 2 0 0 0 1 H3F3A chr1:226252180 5'GT 226252180 Upstream 46bp
chr1 43779603 43779603 1 + G T PRAD 43779601 + 43779581 43779621 41 TGTGCATCCGCAGAAGCTGCCTGCATCGGAGACGCACCTTC TGTGCATCCGCAGAAGCTGCCTTCATCGGAGACGCACCTTC < 41bp 0.813845407307 0.512184330819463 0.003492564 0.0061903 prediction 0.603322152975073 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43779601 chr1:43779603 synonymous SNV . 0 23 hm5C_associated_SNPs_54354 0 0 0 0 1 TIE1 chr1:43779639 5'GT 43779639 Upstream 37bp
chr22 50617536 50617536 1 + A T LUSC 50617532 + 50617512 50617552 41 CTCACCATCCTGAGCCGAAACGCCACACACCCGCTGCTGCA CTCACCATCCTGAGCCGAAACGCCTCACACCCGCTGCTGCA < 41bp 0.820399989910835 0.518740255490893 0.7207787 0.21004874 prediction 0.603319468839884 Functional Loss - PANX2 ENSG00000073150 CDS Human protein_coding chr22:50617532 chr22:50617536 nonsynonymous SNV 0.968 0 25 hm5C_associated_SNPs_54355 0 0 0 0 1 PANX2 chr22:50617564 5'GT 50617564 Upstream 29bp
chr11 65770766 65770766 1 + G T LUAD 65770763 + 65770743 65770783 41 CGAGACTTCGTGGCAGAGCCCATGGGGGAGAAGCCAGTGGG CGAGACTTCGTGGCAGAGCCCATTGGGGAGAAGCCAGTGGG < 41bp 0.801657289581165 0.417261728918502 0.8210434 0.31370914 prediction 0.60331457916233 Functional Loss - BANF1 ENSG00000175334 CDS Human protein_coding chr11:65770763 chr11:65770766 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_54356 0 0 1 0 2 BANF1 chr11:65770706 3'AG 65770706 Downstream 61bp
chr11 65770766 65770766 1 + G T LUAD 65770763 + 65770743 65770783 41 CGAGACTTCGTGGCAGAGCCCATGGGGGAGAAGCCAGTGGG CGAGACTTCGTGGCAGAGCCCATTGGGGAGAAGCCAGTGGG < 41bp 0.801657289581165 0.417261728918502 0.8210434 0.31370914 prediction 0.60331457916233 Functional Loss - BANF1 ENSG00000175334 CDS Human protein_coding chr11:65770763 chr11:65770766 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_54356 0 0 1 0 2 BANF1 chr11:65770844 5'GT 65770844 Upstream 79bp
chr3 44828003 44828003 1 + G T UCEC 44828000 + 44827980 44828020 41 CTGTACTTAAGGGAGCATATCAAGAAGGGAGTCTTTGTTGT CTGTACTTAAGGGAGCATATCAATAAGGGAGTCTTTGTTGT < 41bp 0.874369290152864 0.572717973619702 0.79079473 0.23674434 prediction 0.603302633066323 Functional Loss - KIF15 ENSG00000163808 CDS Human protein_coding chr3:44828000 chr3:44828003 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_54358 0 0 1 0 1 KIF15 chr3:44828066 5'GT 44828066 Upstream 64bp
chr16 2514177 2514177 1 + G T SARC 2514174 + 2514154 2514194 41 GCACCCAGGAGCTGCAGACCCTGGCGGCCCTCAAGCTGCGA GCACCCAGGAGCTGCAGACCCTGTCGGCCCTCAAGCTGCGA < 41bp 0.801649725782082 0.422264696571599 0.3553557 0.09261578 prediction 0.603299451564164 Functional Loss - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2514174 chr16:2514177 nonsynonymous SNV 0.713 0 24 hm5C_associated_SNPs_54359 0 0 0 0 2 C16orf59 chr16:2514155 3'AG 2514155 Downstream 23bp
chr16 2514177 2514177 1 + G T SARC 2514174 + 2514154 2514194 41 GCACCCAGGAGCTGCAGACCCTGGCGGCCCTCAAGCTGCGA GCACCCAGGAGCTGCAGACCCTGTCGGCCCTCAAGCTGCGA < 41bp 0.801649725782082 0.422264696571599 0.3553557 0.09261578 prediction 0.603299451564164 Functional Loss - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2514174 chr16:2514177 nonsynonymous SNV 0.713 0 24 hm5C_associated_SNPs_54359 0 0 0 0 2 C16orf59 chr16:2514230 5'GT 2514230 Upstream 54bp
chr11 1467071 1467071 1 + G T UCEC 1467069 + 1467049 1467089 41 CGCAAATCCATGGAGGTGCTCAGCGTGACGGACGGCGGCTC CGCAAATCCATGGAGGTGCTCATCGTGACGGACGGCGGCTC < 41bp 0.801644601475788 0.475474260140943 0.8671453 0.37372684 prediction 0.603289202951576 Functional Loss - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1467069 chr11:1467071 nonsynonymous SNV 0.977 2 23 hm5C_associated_SNPs_54360 0 0 0 0 2 BRSK2 chr11:1466987 3'AG 1466987 Downstream 85bp
chr11 1467071 1467071 1 + G T UCEC 1467069 + 1467049 1467089 41 CGCAAATCCATGGAGGTGCTCAGCGTGACGGACGGCGGCTC CGCAAATCCATGGAGGTGCTCATCGTGACGGACGGCGGCTC < 41bp 0.801644601475788 0.475474260140943 0.8671453 0.37372684 prediction 0.603289202951576 Functional Loss - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1467069 chr11:1467071 nonsynonymous SNV 0.977 2 23 hm5C_associated_SNPs_54360 0 0 0 0 2 BRSK2 chr11:1467137 5'GT 1467137 Upstream 67bp
chr9 132636908 132636908 1 + G T UCEC 132636905 + 132636885 132636925 41 CACGAGGTGATGTACTCATTCAAGATCAACAGCCACGTCTC CACGAGGTGATGTACTCATTCAATATCAACAGCCACGTCTC < 41bp 0.888398945075168 0.586762749251653 0.57275677 0.10559857 prediction 0.60327239164703 Functional Loss - USP20 ENSG00000136878 CDS Human protein_coding chr9:132636905 chr9:132636908 nonsynonymous SNV 0.979 2 24 hm5C_associated_SNPs_54361 0 0 0 0 1 USP20 chr9:132636855 3'AG 132636855 Downstream 54bp
chr17 20000111 20000111 1 + G T LIHC 20000108 + 20000088 20000128 41 GCTTTTGAGTCCCGACTCAGCAGGGTATGGATCAAAATGCA GCTTTTGAGTCCCGACTCAGCAGTGTATGGATCAAAATGCA < 41bp 0.801635030672677 0.438465561792345 0.80257314 0.07101223 prediction 0.603270061345355 Functional Loss - SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20000108 chr17:20000111 nonsynonymous SNV 0.970 2 24 hm5C_associated_SNPs_54362 0 0 0 0 1 SPECC1 chr17:20000111 3'AG 20000111 Downstream 1bp
chr19 58189423 58189423 1 + G T UCEC 58189420 + 58189400 58189440 41 GGACACCCTCCCAGACTTCCCAAGATACTTCCTTAGAAACA GGACACCCTCCCAGACTTCCCAATATACTTCCTTAGAAACA < 41bp 0.801629153355651 0.44282343173748 0.8668243 0.1429714 prediction 0.603258306711301 Functional Loss - ZSCAN4 ENSG00000180532 CDS Human protein_coding chr19:58189420 chr19:58189423 nonsynonymous SNV 0.023 2 24 hm5C_associated_SNPs_54363 0 0 0 0 1 ZSCAN4 chr19:58189447 5'GT 58189447 Upstream 25bp
chr12 105558084 105558084 1 + A T LUSC 105558080 + 105558060 105558100 41 AGAAGCGACTGGATGTCTATCTACAGGTAGAGAGGAGCCTA AGAAGCGACTGGATGTCTATCTACTGGTAGAGAGGAGCCTA < 41bp 0.801628885041888 0.490061593007895 0.26529053 0.14331272 prediction 0.603257770083776 Functional Loss - WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105558080 chr12:105558084 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_54364 0 0 1 0 1 WASHC4 chr12:105558085 5'GT 105558085 Upstream 2bp
chr16 1825398 1825398 1 + G T KIRC 1825395 + 1825375 1825415 41 CCGAGGTGGCCGTCAGCTGGCCGGAGGTGGAAGAGGTGAGG CCGAGGTGGCCGTCAGCTGGCCGTAGGTGGAAGAGGTGAGG < 41bp 0.801598972461928 0.437123953292242 0.8250717 0.5064626 prediction 0.603197944923856 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825395 chr16:1825398 stopgain 0.122 0 24 hm5C_associated_SNPs_54368 0 0 1 0 3 EME2 chr16:1825316 3'AG 1825316 Downstream 83bp
chr16 1825398 1825398 1 + G T KIRC 1825395 + 1825375 1825415 41 CCGAGGTGGCCGTCAGCTGGCCGGAGGTGGAAGAGGTGAGG CCGAGGTGGCCGTCAGCTGGCCGTAGGTGGAAGAGGTGAGG < 41bp 0.801598972461928 0.437123953292242 0.8250717 0.5064626 prediction 0.603197944923856 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825395 chr16:1825398 stopgain 0.122 0 24 hm5C_associated_SNPs_54368 0 0 1 0 3 EME2 chr16:1825409 5'GT 1825409 Upstream 12bp
chr16 1825398 1825398 1 + G T KIRC 1825395 + 1825375 1825415 41 CCGAGGTGGCCGTCAGCTGGCCGGAGGTGGAAGAGGTGAGG CCGAGGTGGCCGTCAGCTGGCCGTAGGTGGAAGAGGTGAGG < 41bp 0.801598972461928 0.437123953292242 0.8250717 0.5064626 prediction 0.603197944923856 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825395 chr16:1825398 stopgain 0.122 0 24 hm5C_associated_SNPs_54368 0 0 1 0 3 EME2 chr16:1825430 5'GT 1825430 Upstream 33bp
chr12 124093304 124093304 1 + G T SARC 124093302 + 124093282 124093322 41 GCCGAAGGCTTGGATCTGGCCAGCTGTGTGCGATCCCTGGA GCCGAAGGCTTGGATCTGGCCATCTGTGTGCGATCCCTGGA < 41bp 0.801596808504903 0.489479221051171 0.8235739 0.42996728 prediction 0.603193617009806 Functional Loss - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124093302 chr12:124093304 nonsynonymous SNV 0.881 1 23 hm5C_associated_SNPs_54369 0 0 1 0 2 DDX55 chr12:124093227 3'AG 124093227 Downstream 78bp
chr12 124093304 124093304 1 + G T SARC 124093302 + 124093282 124093322 41 GCCGAAGGCTTGGATCTGGCCAGCTGTGTGCGATCCCTGGA GCCGAAGGCTTGGATCTGGCCATCTGTGTGCGATCCCTGGA < 41bp 0.801596808504903 0.489479221051171 0.8235739 0.42996728 prediction 0.603193617009806 Functional Loss - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124093302 chr12:124093304 nonsynonymous SNV 0.881 1 23 hm5C_associated_SNPs_54369 0 0 1 0 2 DDX55 chr12:124093376 5'GT 124093376 Upstream 73bp
chr1 196928092 196928092 1 + G T BLCA 196928089 + 196928069 196928109 41 AAACCAACAAAAGCTTTATTCAAGAACAGGTGACATAGTTG AAACCAACAAAAGCTTTATTCAATAACAGGTGACATAGTTG < 41bp 0.801596379248485 0.463128676127742 0.14964059 0.057580084 prediction 0.603192758496971 Functional Loss - CFHR2 ENSG00000080910 CDS Human protein_coding chr1:196928089 chr1:196928092 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_54370 0 0 0 0 1 CFHR2 chr1:196928011 3'AG 196928011 Downstream 82bp
chr20 45355581 45355581 1 + G T LUAD 45355579 + 45355559 45355599 41 GCCTTCTGCAACAGCTTCAACTGGGCGGCCAACCTCTTCAT GCCTTCTGCAACAGCTTCAACTTGGCGGCCAACCTCTTCAT < 41bp 0.83861448382363 0.53702879284158 0.8775024 0.17901474 prediction 0.6031713819641 Functional Loss - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45355579 chr20:45355581 nonsynonymous SNV 0.968 4 23 hm5C_associated_SNPs_54371 0 0 0 0 2 SLC2A10 chr20:45355503 3'AG 45355503 Downstream 79bp
chr20 45355581 45355581 1 + G T LUAD 45355579 + 45355559 45355599 41 GCCTTCTGCAACAGCTTCAACTGGGCGGCCAACCTCTTCAT GCCTTCTGCAACAGCTTCAACTTGGCGGCCAACCTCTTCAT < 41bp 0.83861448382363 0.53702879284158 0.8775024 0.17901474 prediction 0.6031713819641 Functional Loss - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45355579 chr20:45355581 nonsynonymous SNV 0.968 4 23 hm5C_associated_SNPs_54371 0 0 0 0 2 SLC2A10 chr20:45355625 5'GT 45355625 Upstream 45bp
chr11 7441832 7441832 1 + G T LUAD 7441829 + 7441809 7441849 41 GAGTGAAATGTTGTCATATCCTCGGAAGCCCATTGCACACT GAGTGAAATGTTGTCATATCCTCTGAAGCCCATTGCACACT < 41bp 0.801578519333635 0.444273180136481 0.2628311 0.18348786 prediction 0.603157038667271 Functional Loss - SYT9 ENSG00000170743 CDS Human protein_coding chr11:7441829 chr11:7441832 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54375 0 0 1 2 1 SYT9 chr11:7441866 5'GT 7441866 Upstream 35bp
chr4 71459091 71459091 1 + G T LUAD 71459089 + 71459069 71459109 41 TGATACTGATCCTATGCCTCCTGGAAATGAGTTTTGCAGTG TGATACTGATCCTATGCCTCCTTGAAATGAGTTTTGCAGTG < 41bp 0.807911255852061 0.506356570800724 0.20100483 0.28603512 prediction 0.603109370102675 Functional Loss - AMBN ENSG00000178522 CDS Human protein_coding chr4:71459089 chr4:71459091 synonymous SNV . 0 23 hm5C_associated_SNPs_54378 0 0 0 0 2 AMBN chr4:71459044 3'AG 71459044 Downstream 48bp
chr4 71459091 71459091 1 + G T LUAD 71459089 + 71459069 71459109 41 TGATACTGATCCTATGCCTCCTGGAAATGAGTTTTGCAGTG TGATACTGATCCTATGCCTCCTTGAAATGAGTTTTGCAGTG < 41bp 0.807911255852061 0.506356570800724 0.20100483 0.28603512 prediction 0.603109370102675 Functional Loss - AMBN ENSG00000178522 CDS Human protein_coding chr4:71459089 chr4:71459091 synonymous SNV . 0 23 hm5C_associated_SNPs_54378 0 0 0 0 2 AMBN chr4:71459112 5'GT 71459112 Upstream 22bp
chr1 171761238 171761238 1 + G T LAML 171761236 + 171761216 171761256 41 CACGATCATTTTCCAAAGTCCTGCATTGATGCTGTGGAGAT CACGATCATTTTCCAAAGTCCTTCATTGATGCTGTGGAGAT < 41bp 0.801543732848167 0.496583159408523 0.3909906 0.29407817 prediction 0.603087465696334 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171761236 chr1:171761238 nonsynonymous SNV 0.895 0 23 hm5C_associated_SNPs_54380 0 0 0 0 1 METTL13 chr1:171761157 3'AG 171761157 Downstream 82bp
chr1 20669053 20669053 1 + G T rs34038424 20669050 + 20669030 20669070 41 TGGGGCCAGGAGACCCAGGCCTGGAGCCCTGTGAGAGAGCG TGGGGCCAGGAGACCCAGGCCTGTAGCCCTGTGAGAGAGCG < 41bp 0.801523433603129 0.432499296930345 0.36035633 0.21822721 prediction 0.603046867206257 Functional Loss - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20669050 chr1:20669053 nonsynonymous SNV 0.026 1 24 hm5C_associated_SNPs_54383 0 0 0 0 1 VWA5B1 chr1:20669102 5'GT 20669102 Upstream 50bp
chr1 29638208 29638208 1 + G T COAD 29638205 + 29638185 29638225 41 TCAGACACCTACGGGGACATCAAGATTATGCTGGTGAAGAC TCAGACACCTACGGGGACATCAATATTATGCTGGTGAAGAC < 41bp 0.877108296133196 0.575587807418744 0.31394145 0.29882404 prediction 0.603040977428904 Functional Loss - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29638205 chr1:29638208 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_54384 0 0 1 0 2 PTPRU chr1:29638155 3'AG 29638155 Downstream 54bp
chr1 29638208 29638208 1 + G T COAD 29638205 + 29638185 29638225 41 TCAGACACCTACGGGGACATCAAGATTATGCTGGTGAAGAC TCAGACACCTACGGGGACATCAATATTATGCTGGTGAAGAC < 41bp 0.877108296133196 0.575587807418744 0.31394145 0.29882404 prediction 0.603040977428904 Functional Loss - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29638205 chr1:29638208 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_54384 0 0 1 0 2 PTPRU chr1:29638271 5'GT 29638271 Upstream 64bp
chr12 81111244 81111244 1 + G T LUSC 81111242 + 81111222 81111262 41 CCATCCGCTACATCGAGAGCCTGCAGGAGTTGCTGAGAGAG CCATCCGCTACATCGAGAGCCTTCAGGAGTTGCTGAGAGAG < 41bp 0.817849142600997 0.516335614647528 0.47498006 0.36295623 prediction 0.603027055906939 Functional Loss - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81111242 chr12:81111244 synonymous SNV . 0 23 hm5C_associated_SNPs_54385 0 0 0 0 1 MYF5 chr12:81111343 5'GT 81111343 Upstream 100bp
chr19 16319905 16319905 1 + A T COAD 16319901 + 16319881 16319921 41 CCGCGGCCACCAGCCACCGTCACCAACGCGGTGTCCTGGCG CCGCGGCCACCAGCCACCGTCACCTACGCGGTGTCCTGGCG < 41bp 0.801511036294822 0.469506904027661 0.7755934 0.85736954 prediction 0.603022072589643 Functional Loss - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16319901 chr19:16319905 nonsynonymous SNV 0.259 4 25 hm5C_associated_SNPs_54386 0 0 1 0 2 AP1M1 chr19:16319841 3'AG 16319841 Downstream 65bp
chr19 16319905 16319905 1 + A T COAD 16319901 + 16319881 16319921 41 CCGCGGCCACCAGCCACCGTCACCAACGCGGTGTCCTGGCG CCGCGGCCACCAGCCACCGTCACCTACGCGGTGTCCTGGCG < 41bp 0.801511036294822 0.469506904027661 0.7755934 0.85736954 prediction 0.603022072589643 Functional Loss - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16319901 chr19:16319905 nonsynonymous SNV 0.259 4 25 hm5C_associated_SNPs_54386 0 0 1 0 2 AP1M1 chr19:16319988 5'GT 16319988 Upstream 84bp
chr10 121432086 121432086 1 + G T LUAD 121432084 + 121432064 121432104 41 TCTGTCCAGGGTGCATCGAGCCGGGAGGGCTCACCAGCCAG TCTGTCCAGGGTGCATCGAGCCTGGAGGGCTCACCAGCCAG < 41bp 0.848354419328508 0.546850244468526 0.9276326 0.50919545 prediction 0.603008349719964 Functional Loss - BAG3 ENSG00000151929 CDS Human protein_coding chr10:121432084 chr10:121432086 nonsynonymous SNV 0.838 2 23 hm5C_associated_SNPs_54387 0 0 1 0 1 BAG3 chr10:121432168 5'GT 121432168 Upstream 83bp
chr8 16942756 16942756 1 + G T LUAD 16942754 + 16942734 16942774 41 TTTTCTGGCAGAGCCACATGCAGGGTTCAGAATAGCTTTCA TTTTCTGGCAGAGCCACATGCATGGTTCAGAATAGCTTTCA < 41bp 0.815672204378658 0.514174036045507 0.88206255 0.14431062 prediction 0.602996336666301 Functional Loss - MICU3 ENSG00000155970 CDS Human protein_coding chr8:16942754 chr8:16942756 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_54388 0 0 0 0 2 MICU3 chr8:16942745 3'AG 16942745 Downstream 12bp
chr8 16942756 16942756 1 + G T LUAD 16942754 + 16942734 16942774 41 TTTTCTGGCAGAGCCACATGCAGGGTTCAGAATAGCTTTCA TTTTCTGGCAGAGCCACATGCATGGTTCAGAATAGCTTTCA < 41bp 0.815672204378658 0.514174036045507 0.88206255 0.14431062 prediction 0.602996336666301 Functional Loss - MICU3 ENSG00000155970 CDS Human protein_coding chr8:16942754 chr8:16942756 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_54388 0 0 0 0 2 MICU3 chr8:16942827 5'GT 16942827 Upstream 72bp
chr17 19559769 19559769 1 + G T SARC 19559767 + 19559747 19559787 41 CATTTTCTATACGGGAAACACTGCGGTTGGCAAAATTGTCA CATTTTCTATACGGGAAACACTTCGGTTGGCAAAATTGTCA < 41bp 0.801490537146726 0.497352781381867 0.099799454 0.017747343 prediction 0.602981074293453 Functional Loss - ALDH3A2 ENSG00000072210 CDS Human protein_coding chr17:19559767 chr17:19559769 nonsynonymous SNV 0.294 1 23 hm5C_associated_SNPs_54389 0 0 1 0 1 ALDH3A2 chr17:19559679 3'AG 19559679 Downstream 91bp
chr2 233245374 233245374 1 + G T UCEC 233245371 + 233245351 233245391 41 ACATGAAATACGAGATCCACCGAGACTCCACACTGGACCCC ACATGAAATACGAGATCCACCGATACTCCACACTGGACCCC < 41bp 0.885691669451 0.584211170821182 0.06234646 0.015579194 prediction 0.602960997259635 Functional Loss - ALPP ENSG00000163283 CDS Human protein_coding chr2:233245371 chr2:233245374 nonsynonymous SNV 0.055 5 24 hm5C_associated_SNPs_54392 0 0 0 0 1 ALPP chr2:233245333 3'AG 233245333 Downstream 42bp
chr19 41597750 41597750 1 + G T LUAD 41597748 + 41597728 41597768 41 CCAAGAAGGTGGAGCACAACCAGCGCACGCTGGATCCCAAT CCAAGAAGGTGGAGCACAACCATCGCACGCTGGATCCCAAT < 41bp 0.842697564938437 0.541232546356958 0.8979981 0.31246784 prediction 0.602930037162957 Functional Loss - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41597748 chr19:41597750 nonsynonymous SNV 0.018 1 23 hm5C_associated_SNPs_54394 0 0 0 0 1 CYP2A13 chr19:41597813 5'GT 41597813 Upstream 64bp
chr13 70681423 70681423 1 - C A LUSC 70681425 - 70681405 70681445 41 GGTGCCAGGCATGGACTTTCCTGGACCACACGAAAAAGGGC GGTGCCAGGCATGGACTTTCCTTGACCACACGAAAAAGGGC < 41bp 0.811475355988661 0.510024988958486 0.26802948 0.10308021 prediction 0.60290073406035 Functional Loss - KLHL1 ENSG00000150361 CDS Human protein_coding chr13:70681425 chr13:70681423 stopgain 0.982 0 23 hm5C_associated_SNPs_54397 0 0 0 0 1 KLHL1 chr13:70681335 5'GT 70681335 Upstream 89bp
chr1 210411457 210411457 1 + G T LUAD 210411455 + 210411435 210411475 41 CAAGCTCCTTTGCAGGGAGACCGGGGAGCTGGTCCCCCACT CAAGCTCCTTTGCAGGGAGACCTGGGAGCTGGTCCCCCACT < 41bp 0.801444038969229 0.458160850513065 0.79846454 0.6261488 prediction 0.602888077938458 Functional Loss - SERTAD4 ENSG00000082497 CDS Human protein_coding chr1:210411455 chr1:210411457 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_54399 0 0 1 0 1 SERTAD4 chr1:210411480 5'GT 210411480 Upstream 24bp
chr19 50091798 50091798 1 + G T rs2288920 50091796 + 50091776 50091816 41 CAGCCTGGCTGTGGGGCTGACAGGTGGCATCCTGCTCATTG CAGCCTGGCTGTGGGGCTGACATGTGGCATCCTGCTCATTG < 41bp 0.801443659366304 0.470402513649855 0.7900567 0.13847959 prediction 0.602887318732608 Functional Loss - PRRG2 ENSG00000126460 CDS Human protein_coding chr19:50091796 chr19:50091798 nonsynonymous SNV 0.809 1 23 hm5C_associated_SNPs_54400 0 0 0 0 1 PRRG2 chr19:50091754 3'AG 50091754 Downstream 45bp
chr1 86046687 86046687 1 + G T UCEC 86046684 + 86046664 86046704 41 CACAATGAGCTCCCGCATCGCCAGGGCGCTCGCCTTAGTCG CACAATGAGCTCCCGCATCGCCATGGCGCTCGCCTTAGTCG < 41bp 0.801435936838093 0.435556775038858 0.24618575 0.046715885 prediction 0.602871873676186 Functional Loss - CYR61 ENSG00000142871 CDS Human protein_coding chr1:86046684 chr1:86046687 nonsynonymous SNV 0.075 1 24 hm5C_associated_SNPs_54403 0 0 0 0 1 CYR61 chr1:86046730 5'GT 86046730 Upstream 44bp
chr4 184210713 184210713 1 + G T LUSC 184210711 + 184210691 184210731 41 AGCTGGAGGAACTGAAAGCTCAGGGAGAGACTGACCTTCCA AGCTGGAGGAACTGAAAGCTCATGGAGAGACTGACCTTCCA < 41bp 0.814426490056697 0.5129966072846 0.92141616 0.8951574 prediction 0.602859765544195 Functional Loss - WWC2 ENSG00000151718 CDS Human protein_coding chr4:184210711 chr4:184210713 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_54404 0 0 1 0 1 WWC2 chr4:184210788 5'GT 184210788 Upstream 76bp
chr22 41969722 41969722 1 + G T UCEC 41969720 + 41969700 41969740 41 GTAAGCAGTTCTCACGCTCACAGGGCCATGGCTTCATCACC GTAAGCAGTTCTCACGCTCACATGGCCATGGCTTCATCACC < 41bp 0.801419666718558 0.456780321933484 0.90337974 0.13277996 prediction 0.602839333437116 Functional Loss - CSDC2 ENSG00000172346 CDS Human protein_coding chr22:41969720 chr22:41969722 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_54407 0 0 0 0 2 CSDC2 chr22:41969659 3'AG 41969659 Downstream 64bp
chr22 41969722 41969722 1 + G T UCEC 41969720 + 41969700 41969740 41 GTAAGCAGTTCTCACGCTCACAGGGCCATGGCTTCATCACC GTAAGCAGTTCTCACGCTCACATGGCCATGGCTTCATCACC < 41bp 0.801419666718558 0.456780321933484 0.90337974 0.13277996 prediction 0.602839333437116 Functional Loss - CSDC2 ENSG00000172346 CDS Human protein_coding chr22:41969720 chr22:41969722 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_54407 0 0 0 0 2 CSDC2 chr22:41969781 5'GT 41969781 Upstream 60bp
chr20 2297787 2297787 1 + G T LUSC 2297784 + 2297764 2297804 41 TTACACCGGTGGCCGGGACCCAAGGAGCTGGAACGGCAGCG TTACACCGGTGGCCGGGACCCAATGAGCTGGAACGGCAGCG < 41bp 0.801414489240876 0.408759421930702 0.8704358 0.41513872 prediction 0.602828978481753 Functional Loss - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2297784 chr20:2297787 nonsynonymous SNV 0.965 4 24 hm5C_associated_SNPs_54408 0 0 0 0 1 TGM3 chr20:2297714 3'AG 2297714 Downstream 74bp
chr7 6620309 6620309 1 + G T UCEC 6620307 + 6620287 6620327 41 GCCTGGCCAGGGGAGGAGCACAGGTAAGGATGATCCTTGGA GCCTGGCCAGGGGAGGAGCACATGTAAGGATGATCCTTGGA < 41bp 0.801413879834813 0.477718469196471 0.8967023 0.4055156 prediction 0.602827759669625 Functional Loss - ZDHHC4 ENSG00000136247 CDS Human protein_coding chr7:6620307 chr7:6620309 nonsynonymous SNV 0.546 2 23 hm5C_associated_SNPs_54409 0 0 1 0 1 ZDHHC4 chr7:6620309 5'GT 6620309 Upstream 1bp
chr4 1746346 1746346 1 + G T SARC 1746344 + 1746324 1746364 41 AGGCCCACGCGGAGGAGAAGCTGCAGCTGTGAGTGCTGGGC AGGCCCACGCGGAGGAGAAGCTTCAGCTGTGAGTGCTGGGC < 41bp 0.830034005613156 0.528645415097772 0.42121154 0.24541697 prediction 0.602777181030768 Functional Loss - TACC3 ENSG00000013810 CDS Human protein_coding chr4:1746344 chr4:1746346 synonymous SNV . 0 23 hm5C_associated_SNPs_54410 0 0 1 0 1 TACC3 chr4:1746351 5'GT 1746351 Upstream 6bp
chr19 51380140 51380140 1 + G T UCEC 51380138 + 51380118 51380158 41 TGACCCATAGTCTTGCGCCCCAGGAGTCTTCAGTGTGTGAG TGACCCATAGTCTTGCGCCCCATGAGTCTTCAGTGTGTGAG < 41bp 0.801381748388397 0.470103373427019 0.9187486 0.17234167 prediction 0.602763496776795 Functional Loss - KLK2 ENSG00000167751;ENSG00000167751 exonic;splicing Human protein_coding chr19:51380138 chr19:51380140 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_54412 0 0 0 0 1 KLK2 chr19:51380128 3'AG 51380128 Downstream 13bp
chr17 33477122 33477122 1 + G T UCEC 33477120 + 33477100 33477140 41 TGTATCGGCGATGCCAGGCACTGGAGCACCTGGGGAAGCTG TGTATCGGCGATGCCAGGCACTTGAGCACCTGGGGAAGCTG < 41bp 0.843888351104546 0.542535924422197 0.76696765 0.4540619 prediction 0.602704853364698 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33477120 chr17:33477122 synonymous SNV . 0 23 hm5C_associated_SNPs_54415 0 0 0 0 1 UNC45B chr17:33477067 3'AG 33477067 Downstream 56bp
chr8 106573666 106573666 1 + G T LUAD 106573664 + 106573644 106573684 41 CAACTTCCAGTGGGAACAACCTGGGGGCCGTTTCCTGGGAA CAACTTCCAGTGGGAACAACCTTGGGGCCGTTTCCTGGGAA < 41bp 0.801345526900617 0.498425970589879 0.9191716 0.37498856 prediction 0.602691053801235 Functional Loss - ZFPM2 ENSG00000169946 CDS Human protein_coding chr8:106573664 chr8:106573666 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_54417 0 0 1 0 2 ZFPM2 chr8:106573591 3'AG 106573591 Downstream 76bp
chr8 106573666 106573666 1 + G T LUAD 106573664 + 106573644 106573684 41 CAACTTCCAGTGGGAACAACCTGGGGGCCGTTTCCTGGGAA CAACTTCCAGTGGGAACAACCTTGGGGCCGTTTCCTGGGAA < 41bp 0.801345526900617 0.498425970589879 0.9191716 0.37498856 prediction 0.602691053801235 Functional Loss - ZFPM2 ENSG00000169946 CDS Human protein_coding chr8:106573664 chr8:106573666 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_54417 0 0 1 0 2 ZFPM2 chr8:106573709 5'GT 106573709 Upstream 44bp
chr1 154295829 154295829 1 + G T SKCM 154295827 + 154295807 154295847 41 TGTCCCTGAACAATGGCTTCCTGGATCAGGTAAGTGTGAGG TGTCCCTGAACAATGGCTTCCTTGATCAGGTAAGTGTGAGG < 41bp 0.812855675921978 0.511535572068673 0.0711714 0.016256928 prediction 0.602640207706611 Functional Loss - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154295827 chr1:154295829 synonymous SNV . 0 23 hm5C_associated_SNPs_54419 0 0 0 0 1 AQP10 chr1:154295835 5'GT 154295835 Upstream 7bp
chr4 1374776 1374776 1 + G T UCEC 1374774 + 1374754 1374794 41 GCTGCAGAAGCAGGAGCGCCCGGGTAGGTCTGGGCAAGGCG GCTGCAGAAGCAGGAGCGCCCGTGTAGGTCTGGGCAAGGCG < 41bp 0.801317176070889 0.470801159274031 0.8115258 0.36102864 prediction 0.602634352141777 Functional Loss - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1374774 chr4:1374776 stopgain 0.250 1 23 hm5C_associated_SNPs_54420 0 0 0 0 1 UVSSA chr4:1374776 5'GT 1374776 Upstream 1bp
chr16 1817858 1817858 1 + G T CESC 1817855 + 1817835 1817875 41 CGCATCACGGCCCTGCTTGTCGCGGGCAGCCGGCTCTGGGT CGCATCACGGCCCTGCTTGTCGCTGGCAGCCGGCTCTGGGT < 41bp 0.801307728219144 0.423045284267544 0.9052994 0.24260223 prediction 0.602615456438287 Functional Loss - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1817855 chr16:1817858 synonymous SNV . 0 24 hm5C_associated_SNPs_54421 0 0 1 0 1 MAPK8IP3 chr16:1817806 3'AG 1817806 Downstream 53bp
chr3 9719032 9719032 1 + G T LGG 9719030 + 9719010 9719050 41 TTTTCAAGGAATATAAAGATCGGGATTACATGGCAGAAGGG TTTTCAAGGAATATAAAGATCGTGATTACATGGCAGAAGGG < 41bp 0.801294046828069 0.489508442956224 0.898018 0.0870066 prediction 0.602588093656139 Functional Loss - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9719030 chr3:9719032 synonymous SNV . 0 23 hm5C_associated_SNPs_54422 0 0 1 0 2 MTMR14 chr3:9719001 3'AG 9719001 Downstream 32bp
chr3 9719032 9719032 1 + G T LGG 9719030 + 9719010 9719050 41 TTTTCAAGGAATATAAAGATCGGGATTACATGGCAGAAGGG TTTTCAAGGAATATAAAGATCGTGATTACATGGCAGAAGGG < 41bp 0.801294046828069 0.489508442956224 0.898018 0.0870066 prediction 0.602588093656139 Functional Loss - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9719030 chr3:9719032 synonymous SNV . 0 23 hm5C_associated_SNPs_54422 0 0 1 0 2 MTMR14 chr3:9719071 5'GT 9719071 Upstream 40bp
chr17 7606341 7606341 1 + G T LUAD 7606338 + 7606318 7606358 41 CAGTTCCTAGTGAGTGGCAGCACGAGCGGGGCTGTCTCTGT CAGTTCCTAGTGAGTGGCAGCACTAGCGGGGCTGTCTCTGT < 41bp 0.882657655150754 0.58143127803234 0.22813681 0.04363203 prediction 0.602452754236828 Functional Loss - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7606338 chr17:7606341 synonymous SNV . 0 24 hm5C_associated_SNPs_54426 0 0 0 0 1 WRAP53 chr17:7606311 3'AG 7606311 Downstream 31bp
chr12 121125332 121125332 1 + G T LUAD 121125330 + 121125310 121125350 41 CCTTTGGAAGGCCGGGTGGGCCGAGGTGAGAGTCCCCCTGC CCTTTGGAAGGCCGGGTGGGCCTAGGTGAGAGTCCCCCTGC < 41bp 0.839417187445365 0.538202510554116 0.9283649 0.8356807 prediction 0.602429353782498 Functional Loss - MLEC ENSG00000110917 CDS Human protein_coding chr12:121125330 chr12:121125332 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_54428 0 0 1 0 1 MLEC chr12:121125334 5'GT 121125334 Upstream 3bp
chr11 9522759 9522759 1 + A C STAD 9522755 + 9522735 9522775 41 ACCTTATTACTGCACAGAGCCAGGATGTGGGAGGGCATTTG ACCTTATTACTGCACAGAGCCAGGCTGTGGGAGGGCATTTG < 41bp 0.899140443283203 0.597945592942112 0.89437073 0.8406736 prediction 0.602389700682182 Functional Loss - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9522755 chr11:9522759 synonymous SNV . 0 25 hm5C_associated_SNPs_54429 0 0 1 0 1 ZNF143 chr11:9522817 5'GT 9522817 Upstream 59bp
chr8 33346310 33346310 1 + G T LUAD 33346307 + 33346287 33346327 41 GCGGCTTTTCCTCGGCGTCTCTGGGAACGGGTAAGCCTTAC GCGGCTTTTCCTCGGCGTCTCTGTGAACGGGTAAGCCTTAC < 41bp 0.874648082986916 0.573473175515045 0.20560661 0.052428365 prediction 0.602349814943743 Functional Loss - MAK16 ENSG00000198042 CDS Human protein_coding chr8:33346307 chr8:33346310 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54430 0 0 1 0 2 MAK16 chr8:33346252 3'AG 33346252 Downstream 59bp
chr8 33346310 33346310 1 + G T LUAD 33346307 + 33346287 33346327 41 GCGGCTTTTCCTCGGCGTCTCTGGGAACGGGTAAGCCTTAC GCGGCTTTTCCTCGGCGTCTCTGTGAACGGGTAAGCCTTAC < 41bp 0.874648082986916 0.573473175515045 0.20560661 0.052428365 prediction 0.602349814943743 Functional Loss - MAK16 ENSG00000198042 CDS Human protein_coding chr8:33346307 chr8:33346310 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54430 0 0 1 0 2 MAK16 chr8:33346316 5'GT 33346316 Upstream 7bp
chr16 88779765 88779765 1 + G T LGG 88779762 + 88779742 88779782 41 GCCCGAGCCCACGGCTACTCCAAGGTCATGACTGGGGACAG GCCCGAGCCCACGGCTACTCCAATGTCATGACTGGGGACAG < 41bp 0.897011060080038 0.595858036844387 0.93239045 0.2406294 prediction 0.602306046471302 Functional Loss - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88779762 chr16:88779765 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_54431 0 0 0 0 2 CTU2 chr16:88779720 3'AG 88779720 Downstream 46bp
chr16 88779765 88779765 1 + G T LGG 88779762 + 88779742 88779782 41 GCCCGAGCCCACGGCTACTCCAAGGTCATGACTGGGGACAG GCCCGAGCCCACGGCTACTCCAATGTCATGACTGGGGACAG < 41bp 0.897011060080038 0.595858036844387 0.93239045 0.2406294 prediction 0.602306046471302 Functional Loss - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88779762 chr16:88779765 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_54431 0 0 0 0 2 CTU2 chr16:88779855 5'GT 88779855 Upstream 91bp
chr7 155530331 155530331 1 + G T UCEC 155530329 + 155530309 155530349 41 GGAGAGCCCCACCCCCGCCTCAGGATCGAGACCCTTTCTTC GGAGAGCCCCACCCCCGCCTCATGATCGAGACCCTTTCTTC < 41bp 0.801136498904978 0.469076178129608 0.90799373 0.15707499 prediction 0.602272997809955 Functional Loss - RBM33 ENSG00000184863 CDS Human protein_coding chr7:155530329 chr7:155530331 nonsynonymous SNV 0.991 3 23 hm5C_associated_SNPs_54432 0 0 1 0 1 RBM33 chr7:155530356 5'GT 155530356 Upstream 26bp
chr4 113347640 113347640 1 + G T UCEC 113347638 + 113347618 113347658 41 TTCAGGGATGTGGTACGAAGCAGCAGAGTTAATATGGGCCT TTCAGGGATGTGGTACGAAGCATCAGAGTTAATATGGGCCT < 41bp 0.822153831217978 0.521060826284634 0.3236165 0.117302954 prediction 0.602186009866687 Functional Loss - ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113347638 chr4:113347640 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_54434 0 0 0 0 2 ALPK1 chr4:113347623 3'AG 113347623 Downstream 18bp
chr4 113347640 113347640 1 + G T UCEC 113347638 + 113347618 113347658 41 TTCAGGGATGTGGTACGAAGCAGCAGAGTTAATATGGGCCT TTCAGGGATGTGGTACGAAGCATCAGAGTTAATATGGGCCT < 41bp 0.822153831217978 0.521060826284634 0.3236165 0.117302954 prediction 0.602186009866687 Functional Loss - ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113347638 chr4:113347640 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_54434 0 0 0 0 2 ALPK1 chr4:113347699 5'GT 113347699 Upstream 60bp
chr15 74572368 74572368 1 + G C HNSC 74572367 + 74572347 74572387 41 AGTCCTTCCTCTTCCAAGGCCGAGATGGAGCTACCAGCTTC AGTCCTTCCTCTTCCAAGGCCCAGATGGAGCTACCAGCTTC < 41bp 0.801069125607892 0.492441590590257 0.30677694 0.104029745 prediction 0.602138251215785 Functional Loss - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74572367 chr15:74572368 nonsynonymous SNV 0.952 2 22 hm5C_associated_SNPs_54438 0 0 0 0 2 CCDC33 chr15:74572304 3'AG 74572304 Downstream 65bp
chr15 74572368 74572368 1 + G C HNSC 74572367 + 74572347 74572387 41 AGTCCTTCCTCTTCCAAGGCCGAGATGGAGCTACCAGCTTC AGTCCTTCCTCTTCCAAGGCCCAGATGGAGCTACCAGCTTC < 41bp 0.801069125607892 0.492441590590257 0.30677694 0.104029745 prediction 0.602138251215785 Functional Loss - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74572367 chr15:74572368 nonsynonymous SNV 0.952 2 22 hm5C_associated_SNPs_54438 0 0 0 0 2 CCDC33 chr15:74572433 5'GT 74572433 Upstream 66bp
chr15 74572370 74572370 1 + G T UCEC 74572367 + 74572347 74572387 41 AGTCCTTCCTCTTCCAAGGCCGAGATGGAGCTACCAGCTTC AGTCCTTCCTCTTCCAAGGCCGATATGGAGCTACCAGCTTC < 41bp 0.801069125607892 0.413363235220429 0.30677694 0.036218494 prediction 0.602138251215785 Functional Loss - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74572367 chr15:74572370 nonsynonymous SNV 0.979 4 24 hm5C_associated_SNPs_54439 0 0 0 0 2 CCDC33 chr15:74572304 3'AG 74572304 Downstream 67bp
chr15 74572370 74572370 1 + G T UCEC 74572367 + 74572347 74572387 41 AGTCCTTCCTCTTCCAAGGCCGAGATGGAGCTACCAGCTTC AGTCCTTCCTCTTCCAAGGCCGATATGGAGCTACCAGCTTC < 41bp 0.801069125607892 0.413363235220429 0.30677694 0.036218494 prediction 0.602138251215785 Functional Loss - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74572367 chr15:74572370 nonsynonymous SNV 0.979 4 24 hm5C_associated_SNPs_54439 0 0 0 0 2 CCDC33 chr15:74572433 5'GT 74572433 Upstream 64bp
chr16 722181 722181 1 + G T UCEC 722179 + 722159 722199 41 GGACCAGGCCCATGCCATCACAGGTAGGCACCCACCCTCCC GGACCAGGCCCATGCCATCACATGTAGGCACCCACCCTCCC < 41bp 0.801068215288494 0.470875345501686 0.8901727 0.7122817 prediction 0.602136430576988 Functional Loss - RHOT2 ENSG00000140983 CDS Human protein_coding chr16:722179 chr16:722181 nonsynonymous SNV 0.829 4 23 hm5C_associated_SNPs_54440 0 0 1 0 2 RHOT2 chr16:722084 3'AG 722084 Downstream 98bp
chr16 722181 722181 1 + G T UCEC 722179 + 722159 722199 41 GGACCAGGCCCATGCCATCACAGGTAGGCACCCACCCTCCC GGACCAGGCCCATGCCATCACATGTAGGCACCCACCCTCCC < 41bp 0.801068215288494 0.470875345501686 0.8901727 0.7122817 prediction 0.602136430576988 Functional Loss - RHOT2 ENSG00000140983 CDS Human protein_coding chr16:722179 chr16:722181 nonsynonymous SNV 0.829 4 23 hm5C_associated_SNPs_54440 0 0 1 0 2 RHOT2 chr16:722181 5'GT 722181 Upstream 1bp
chr12 56547784 56547784 1 + G T GBM 56547782 + 56547762 56547802 41 TGCTGCTAAGCCAGCAGCAGCAGGGGCTCCTCCAGCCAAGA TGCTGCTAAGCCAGCAGCAGCATGGGCTCCTCCAGCCAAGA < 41bp 0.853888664657471 0.552823883992171 0.94447976 0.14941248 prediction 0.602129561330601 Functional Loss - MYL6B ENSG00000196465 CDS Human protein_coding chr12:56547782 chr12:56547784 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_54441 0 0 1 0 1 MYL6B chr12:56547876 5'GT 56547876 Upstream 93bp
chr19 51297750 51297750 1 + G T UCEC 51297747 + 51297727 51297767 41 TGCTGGCCCTCCAGGGGGCCCTGGGCCTCTATGATGGACAC TGCTGGCCCTCCAGGGGGCCCTGTGCCTCTATGATGGACAC < 41bp 0.801041955059676 0.418697868185862 0.17743191 0.0474661 prediction 0.602083910119352 Functional Loss - ACPT ENSG00000142513 CDS Human protein_coding chr19:51297747 chr19:51297750 nonsynonymous SNV 0.977 3 24 hm5C_associated_SNPs_54446 0 0 0 0 1 ACPT chr19:51297714 3'AG 51297714 Downstream 37bp
chr16 72142724 72142724 1 + G T LUAD 72142722 + 72142702 72142742 41 ATCGGGGAGTACGTGAACATCCGCACAGGGATGCCCTGCCA ATCGGGGAGTACGTGAACATCCTCACAGGGATGCCCTGCCA < 41bp 0.801036810838891 0.483694925596244 0.1592029 0.08720252 prediction 0.602073621677782 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72142722 chr16:72142724 nonsynonymous SNV 0.961 1 23 hm5C_associated_SNPs_54447 0 0 0 0 1 DHX38 chr16:72142699 3'AG 72142699 Downstream 26bp
chr1 1391224 1391224 1 + G T LUSC 1391221 + 1391201 1391241 41 GCCATAATGACAAGGAACATCAAGAAGAACCGGGGCCTGTA GCCATAATGACAAGGAACATCAATAAGAACCGGGGCCTGTA < 41bp 0.888342353182456 0.587340315116567 0.7616133 0.34404078 prediction 0.602004076131778 Functional Loss - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1391221 chr1:1391224 nonsynonymous SNV 0.002 3 24 hm5C_associated_SNPs_54449 0 0 0 0 2 ATAD3C chr1:1391171 3'AG 1391171 Downstream 54bp
chr1 1391224 1391224 1 + G T LUSC 1391221 + 1391201 1391241 41 GCCATAATGACAAGGAACATCAAGAAGAACCGGGGCCTGTA GCCATAATGACAAGGAACATCAATAAGAACCGGGGCCTGTA < 41bp 0.888342353182456 0.587340315116567 0.7616133 0.34404078 prediction 0.602004076131778 Functional Loss - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1391221 chr1:1391224 nonsynonymous SNV 0.002 3 24 hm5C_associated_SNPs_54449 0 0 0 0 2 ATAD3C chr1:1391296 5'GT 1391296 Upstream 73bp
chr9 133543603 133543603 1 + G T UCEC 133543601 + 133543581 133543621 41 GATGCCAGCCAGGAGGACCACCGGAGCTGGATGACCTACAT GATGCCAGCCAGGAGGACCACCTGAGCTGGATGACCTACAT < 41bp 0.800998777655484 0.469606000827238 0.6812556 0.13549164 prediction 0.601997555310969 Functional Loss - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133543601 chr9:133543603 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_54450 0 0 0 0 2 PRDM12 chr9:133543545 3'AG 133543545 Downstream 59bp
chr9 133543603 133543603 1 + G T UCEC 133543601 + 133543581 133543621 41 GATGCCAGCCAGGAGGACCACCGGAGCTGGATGACCTACAT GATGCCAGCCAGGAGGACCACCTGAGCTGGATGACCTACAT < 41bp 0.800998777655484 0.469606000827238 0.6812556 0.13549164 prediction 0.601997555310969 Functional Loss - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133543601 chr9:133543603 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_54450 0 0 0 0 2 PRDM12 chr9:133543700 5'GT 133543700 Upstream 98bp
chr17 61937576 61937576 1 + G T rs191038457 61937573 + 61937553 61937593 41 CTGCTGAAAACACAGAGTAACGGGTTGGTGATTCGGCTGTA CTGCTGAAAACACAGAGTAACGGTTTGGTGATTCGGCTGTA < 41bp 0.800951178104545 0.456533753858282 0.87692213 0.10151383 prediction 0.601902356209089 Functional Loss - TCAM1P ENSG00000240280 ncRNA_exonic Human transcribed_unitary_pseudogene chr17:61937573 chr17:61937576 . . 0 24 hm5C_associated_SNPs_54456 0 0 0 0 1 TCAM1P chr17:61937656 5'GT 61937656 Upstream 81bp
chr20 16729538 16729538 1 + G T UCEC 16729535 + 16729515 16729555 41 CTATTTCTCTGGCTAGTGCTCAAGAAGATTATAATGCCCCG CTATTTCTCTGGCTAGTGCTCAATAAGATTATAATGCCCCG < 41bp 0.857193003743786 0.556242886124994 0.7778424 0.078151286 prediction 0.601900235237584 Functional Loss - OTOR ENSG00000125879 CDS Human protein_coding chr20:16729535 chr20:16729538 stopgain 0.997 1 24 hm5C_associated_SNPs_54457 0 0 0 0 1 OTOR chr20:16729512 3'AG 16729512 Downstream 27bp
chrX 149832069 149832069 1 + G T UCEC 149832067 + 149832047 149832087 41 TACTACATTAGATGGAACCCCAGGATCAAGCAACAAGTAAG TACTACATTAGATGGAACCCCATGATCAAGCAACAAGTAAG < 41bp 0.800942379902582 0.496446748164495 0.3663858 0.12588891 prediction 0.601884759805164 Functional Loss - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149832067 chrX:149832069 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_54458 0 0 0 1 1 MTM1 chrX:149832082 5'GT 149832082 Upstream 14bp
chr19 50387551 50387551 1 + G C BLCA 50387550 + 50387530 50387570 41 GACAGGACCAACAAGTTCTACGAGGGTCCCGAGAACCCGGG GACAGGACCAACAAGTTCTACCAGGGTCCCGAGAACCCGGG < 41bp 0.804373548776079 0.503435138270768 0.2408514 0.19905886 prediction 0.601876821010622 Functional Loss - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50387550 chr19:50387551 nonsynonymous SNV 0.986 2 22 hm5C_associated_SNPs_54459 0 0 0 2 2 TBC1D17 chr19:50387510 3'AG 50387510 Downstream 42bp
chr19 50387551 50387551 1 + G C BLCA 50387550 + 50387530 50387570 41 GACAGGACCAACAAGTTCTACGAGGGTCCCGAGAACCCGGG GACAGGACCAACAAGTTCTACCAGGGTCCCGAGAACCCGGG < 41bp 0.804373548776079 0.503435138270768 0.2408514 0.19905886 prediction 0.601876821010622 Functional Loss - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50387550 chr19:50387551 nonsynonymous SNV 0.986 2 22 hm5C_associated_SNPs_54459 0 0 0 2 2 TBC1D17 chr19:50387626 5'GT 50387626 Upstream 76bp
chr2 238647925 238647925 1 + G T LUAD 238647922 + 238647902 238647942 41 TCCAGCTCCCGCGCCTCCTCCAGGGCCAGCTCGGCCCGGGC TCCAGCTCCCGCGCCTCCTCCAGTGCCAGCTCGGCCCGGGC < 41bp 0.800923938150912 0.4328422034101 0.9262694 0.19306621 prediction 0.601847876301824 Functional Loss - LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238647922 chr2:238647925 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_54461 0 0 0 0 2 LRRFIP1 chr2:238647875 3'AG 238647875 Downstream 51bp
chr2 238647925 238647925 1 + G T LUAD 238647922 + 238647902 238647942 41 TCCAGCTCCCGCGCCTCCTCCAGGGCCAGCTCGGCCCGGGC TCCAGCTCCCGCGCCTCCTCCAGTGCCAGCTCGGCCCGGGC < 41bp 0.800923938150912 0.4328422034101 0.9262694 0.19306621 prediction 0.601847876301824 Functional Loss - LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238647922 chr2:238647925 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_54461 0 0 0 0 2 LRRFIP1 chr2:238647952 5'GT 238647952 Upstream 28bp
chr2 238647924 238647924 1 + G T UCEC 238647922 + 238647902 238647942 41 TCCAGCTCCCGCGCCTCCTCCAGGGCCAGCTCGGCCCGGGC TCCAGCTCCCGCGCCTCCTCCATGGCCAGCTCGGCCCGGGC < 41bp 0.800923938150912 0.469007412331583 0.9262694 0.32179582 prediction 0.601847876301824 Functional Loss - LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238647922 chr2:238647924 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_54462 0 0 0 0 2 LRRFIP1 chr2:238647875 3'AG 238647875 Downstream 50bp
chr2 238647924 238647924 1 + G T UCEC 238647922 + 238647902 238647942 41 TCCAGCTCCCGCGCCTCCTCCAGGGCCAGCTCGGCCCGGGC TCCAGCTCCCGCGCCTCCTCCATGGCCAGCTCGGCCCGGGC < 41bp 0.800923938150912 0.469007412331583 0.9262694 0.32179582 prediction 0.601847876301824 Functional Loss - LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238647922 chr2:238647924 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_54462 0 0 0 0 2 LRRFIP1 chr2:238647952 5'GT 238647952 Upstream 29bp
chr1 46976927 46976927 1 + G T BRCA 46976925 + 46976905 46976945 41 CTGGGGCTGACAGCAAGGGGCTGGGCTGCAAGAGGGGCAGC CTGGGGCTGACAGCAAGGGGCTTGGCTGCAAGAGGGGCAGC < 41bp 0.848890828177799 0.547970238717193 0.61598086 0.34095642 prediction 0.601841178921212 Functional Loss - DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46976925 chr1:46976927 synonymous SNV . 0 23 hm5C_associated_SNPs_54463 0 0 0 0 1 DMBX1 chr1:46976955 5'GT 46976955 Upstream 29bp
chr5 1245999 1245999 1 + G T LUAD 1245996 + 1245976 1246016 41 CGCGTCAGGAGAAGCTCTACCCGGGCTGGGCGCGCGCCGCC CGCGTCAGGAGAAGCTCTACCCGTGCTGGGCGCGCGCCGCC < 41bp 0.886926981511332 0.586015141666424 0.91466546 0.56388074 prediction 0.601823679689816 Functional Loss - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1245996 chr5:1245999 nonsynonymous SNV 0.164 2 24 hm5C_associated_SNPs_54464 0 0 0 0 1 SLC6A18 chr5:1245963 3'AG 1245963 Downstream 37bp
chr16 71951006 71951006 1 + G T COAD 71951003 + 71950983 71951023 41 TACATTGATCTGGGCTGCTCCTCGACTCCAGTCAGAAGTGG TACATTGATCTGGGCTGCTCCTCTACTCCAGTCAGAAGTGG < 41bp 0.80091042675231 0.451179370902839 0.31846172 0.38107494 prediction 0.601820853504619 Functional Loss - IST1 ENSG00000182149 CDS Human protein_coding chr16:71951003 chr16:71951006 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_54465 0 0 0 0 2 IST1 chr16:71950950 3'AG 71950950 Downstream 57bp
chr16 71951006 71951006 1 + G T COAD 71951003 + 71950983 71951023 41 TACATTGATCTGGGCTGCTCCTCGACTCCAGTCAGAAGTGG TACATTGATCTGGGCTGCTCCTCTACTCCAGTCAGAAGTGG < 41bp 0.80091042675231 0.451179370902839 0.31846172 0.38107494 prediction 0.601820853504619 Functional Loss - IST1 ENSG00000182149 CDS Human protein_coding chr16:71951003 chr16:71951006 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_54465 0 0 0 0 2 IST1 chr16:71951037 5'GT 71951037 Upstream 32bp
chr4 110415841 110415841 1 + A T rs61745402 110415837 + 110415817 110415857 41 TGAACCTGATCCTGCTTCTGCTCCAGCTCCAGCTTCAGCTC TGAACCTGATCCTGCTTCTGCTCCTGCTCCAGCTTCAGCTC < 41bp 0.845586310411256 0.544694347870148 0.41465738 0.14649186 prediction 0.601783925082217 Functional Loss - SEC24B ENSG00000138802 CDS Human protein_coding chr4:110415837 chr4:110415841 synonymous SNV . 0 25 hm5C_associated_SNPs_54468 0 0 1 0 1 SEC24B chr4:110415771 3'AG 110415771 Downstream 71bp
chr6 13592107 13592107 1 + G T UCEC 13592104 + 13592084 13592124 41 CTGCACCGCAAGGCTGGCACCAAGAACCTTCTGGAGATCCA CTGCACCGCAAGGCTGGCACCAATAACCTTCTGGAGATCCA < 41bp 0.800866887283478 0.429852844078965 0.33529449 0.12570566 prediction 0.601733774566955 Functional Loss - SIRT5 ENSG00000124523 CDS Human protein_coding chr6:13592104 chr6:13592107 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_54470 0 0 1 0 1 SIRT5 chr6:13592126 5'GT 13592126 Upstream 20bp
chr4 100451058 100451058 1 + G T COAD 100451055 + 100451035 100451075 41 TCTTCAGGGATGACAAGTACCAAGAATGATGTGAAAGCAAA TCTTCAGGGATGACAAGTACCAATAATGATGTGAAAGCAAA < 41bp 0.868075446052521 0.567225062974677 0.15088779 0.14091 prediction 0.601700766155686 Functional Loss - C4orf17 ENSG00000138813 CDS Human protein_coding chr4:100451055 chr4:100451058 nonsynonymous SNV 0.008 1 24 hm5C_associated_SNPs_54473 0 0 0 0 2 C4orf17 chr4:100450972 3'AG 100450972 Downstream 87bp
chr4 100451058 100451058 1 + G T COAD 100451055 + 100451035 100451075 41 TCTTCAGGGATGACAAGTACCAAGAATGATGTGAAAGCAAA TCTTCAGGGATGACAAGTACCAATAATGATGTGAAAGCAAA < 41bp 0.868075446052521 0.567225062974677 0.15088779 0.14091 prediction 0.601700766155686 Functional Loss - C4orf17 ENSG00000138813 CDS Human protein_coding chr4:100451055 chr4:100451058 nonsynonymous SNV 0.008 1 24 hm5C_associated_SNPs_54473 0 0 0 0 2 C4orf17 chr4:100451115 5'GT 100451115 Upstream 58bp
chr17 19316364 19316364 1 + G T HNSC 19316361 + 19316341 19316381 41 TGCCTGAAGCACCCTCTGGCCAGGGACACCCCAGTCTGCCT TGCCTGAAGCACCCTCTGGCCAGTGACACCCCAGTCTGCCT < 41bp 0.800846872872952 0.422516903511353 0.91247475 0.102395475 prediction 0.601693745745903 Functional Loss - RNF112 ENSG00000128482 CDS Human protein_coding chr17:19316361 chr17:19316364 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_54474 0 0 0 0 1 RNF112 chr17:19316457 5'GT 19316457 Upstream 94bp
chr2 98264477 98264477 1 + G T SARC 98264475 + 98264455 98264495 41 TTAGGTGAAGAGGACAATACCAGCGTCGTCTGGTTTTGGCT TTAGGTGAAGAGGACAATACCATCGTCGTCTGGTTTTGGCT < 41bp 0.820462917391739 0.519635039118821 0.60819024 0.17551154 prediction 0.601655756545836 Functional Loss - COX5B ENSG00000135940 CDS Human protein_coding chr2:98264475 chr2:98264477 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_54475 0 0 1 0 1 COX5B chr2:98264459 3'AG 98264459 Downstream 19bp
chr19 36120133 36120133 1 + G T LIHC 36120131 + 36120111 36120151 41 CGGGTCCTGGCGCTGGCATCCCGGGCAAAAGCGGCGAGGAA CGGGTCCTGGCGCTGGCATCCCTGGCAAAAGCGGCGAGGAA < 41bp 0.800819482490164 0.476482249427213 0.8856803 0.12789008 prediction 0.601638964980328 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36120131 chr19:36120133 synonymous SNV . 0 23 hm5C_associated_SNPs_54477 0 0 1 0 1 RBM42 chr19:36120183 5'GT 36120183 Upstream 51bp
chr17 47243571 47243571 1 + G T UCEC 47243568 + 47243548 47243588 41 TTTCTCTTCAACGAGGAGACCAAGATTGAGGTGCTGGTGGA TTTCTCTTCAACGAGGAGACCAATATTGAGGTGCTGGTGGA < 41bp 0.800810243892872 0.422889841305692 0.10095444 0.046796918 prediction 0.601620487785743 Functional Loss - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47243568 chr17:47243571 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_54478 0 0 0 0 1 B4GALNT2 chr17:47243616 5'GT 47243616 Upstream 46bp
chr2 133175390 133175390 1 + G T THCA 133175388 + 133175368 133175408 41 AAGCCAGAAGGGCTCGCTGGCCGGGGGCACGCGGCCTCCGC AAGCCAGAAGGGCTCGCTGGCCTGGGGCACGCGGCCTCCGC < 41bp 0.800809819285734 0.453521023832334 0.9230045 0.8517474 prediction 0.601619638571468 Functional Loss - GPR39 ENSG00000183840 CDS Human protein_coding chr2:133175388 chr2:133175390 nonsynonymous SNV 0.000 3 23 hm5C_associated_SNPs_54479 0 0 0 0 1 GPR39 chr2:133175471 5'GT 133175471 Upstream 82bp
chrX 72673480 72673480 1 + G T LUAD 72673478 + 72673458 72673498 41 AATCAGAGCTGGCAGTTAACCTGGGCCTTTCCGAGAGACAG AATCAGAGCTGGCAGTTAACCTTGGCCTTTCCGAGAGACAG < 41bp 0.838698064939951 0.537908160009159 0.89933777 0.28942388 prediction 0.601579809861583 Functional Loss - CDX4 ENSG00000131264 CDS Human protein_coding chrX:72673478 chrX:72673480 synonymous SNV . 0 23 hm5C_associated_SNPs_54481 0 0 0 0 1 CDX4 chrX:72673498 5'GT 72673498 Upstream 19bp
chr16 30972772 30972772 1 + G T SARC 30972770 + 30972750 30972790 41 CTGGCCCGTGTGCTCTTCACCAGCACTCGGGGCGCCAAGGA CTGGCCCGTGTGCTCTTCACCATCACTCGGGGCGCCAAGGA < 41bp 0.800779297300653 0.473621759067989 0.26526427 0.068265766 prediction 0.601558594601306 Functional Loss - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30972770 chr16:30972772 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_54482 0 0 1 0 1 SETD1A chr16:30972858 5'GT 30972858 Upstream 87bp
chr12 110960163 110960163 1 + G T PRAD 110960161 + 110960141 110960181 41 TGGAGATGTCAGTGAAGTATCAGAAAGCAGTGTCAGCAACA TGGAGATGTCAGTGAAGTATCATAAAGCAGTGTCAGCAACA < 41bp 0.826378209547909 0.525601572807815 0.5148079 0.08514908 prediction 0.601553273480189 Functional Loss - RAD9B ENSG00000151164 CDS Human protein_coding chr12:110960161 chr12:110960163 stopgain 0.212 0 23 hm5C_associated_SNPs_54483 0 0 0 0 1 RAD9B chr12:110960216 5'GT 110960216 Upstream 54bp
chr12 10217407 10217407 1 + G T SARC 10217405 + 10217385 10217425 41 GGGTTGTCTCAGGATGGACACAGCGGACGCTGGCTTTGGCA GGGTTGTCTCAGGATGGACACATCGGACGCTGGCTTTGGCA < 41bp 0.800768552018028 0.46757569460622 0.84091014 0.18466002 prediction 0.601537104036056 Functional Loss - CLEC9A ENSG00000197992 CDS Human protein_coding chr12:10217405 chr12:10217407 nonsynonymous SNV 0.045 2 23 hm5C_associated_SNPs_54485 0 0 0 0 2 CLEC9A chr12:10217331 3'AG 10217331 Downstream 77bp
chr12 10217407 10217407 1 + G T SARC 10217405 + 10217385 10217425 41 GGGTTGTCTCAGGATGGACACAGCGGACGCTGGCTTTGGCA GGGTTGTCTCAGGATGGACACATCGGACGCTGGCTTTGGCA < 41bp 0.800768552018028 0.46757569460622 0.84091014 0.18466002 prediction 0.601537104036056 Functional Loss - CLEC9A ENSG00000197992 CDS Human protein_coding chr12:10217405 chr12:10217407 nonsynonymous SNV 0.045 2 23 hm5C_associated_SNPs_54485 0 0 0 0 2 CLEC9A chr12:10217452 5'GT 10217452 Upstream 46bp
chr11 63960577 63960577 1 + A T LUSC 63960573 + 63960553 63960593 41 AATGAGCTGAAGGAGAAAGGCAACAAGGCCCTGAGCGTGGG AATGAGCTGAAGGAGAAAGGCAACTAGGCCCTGAGCGTGGG < 41bp 0.814242730780968 0.513477458303024 0.04466626 0.03647566 prediction 0.601530544955888 Functional Loss - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63960573 chr11:63960577 stopgain 1.000 0 25 hm5C_associated_SNPs_54486 0 0 1 0 1 STIP1 chr11:63960550 3'AG 63960550 Downstream 28bp
chr11 15098972 15098972 1 + G T LUAD 15098970 + 15098950 15098990 41 TCCAAAGCCTTTGGCAGGCGCCGCAGGGACCTTCAAGCCTG TCCAAAGCCTTTGGCAGGCGCCTCAGGGACCTTCAAGCCTG < 41bp 0.813492839177757 0.512735985071017 0.6315541 0.36921966 prediction 0.601513708213482 Functional Loss - CALCB ENSG00000175868 CDS Human protein_coding chr11:15098970 chr11:15098972 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_54487 0 0 0 0 1 CALCB chr11:15099016 5'GT 15099016 Upstream 45bp
chr9 37732369 37732369 1 + G T LUAD 37732366 + 37732346 37732386 41 TGTAGCTCTGCACTCCGACTCGCGGCTCTGCACATCCAGGA TGTAGCTCTGCACTCCGACTCGCTGCTCTGCACATCCAGGA < 41bp 0.800742859406868 0.422171578952669 0.38781002 0.0650619 prediction 0.601485718813737 Functional Loss - FRMPD1 ENSG00000070601 CDS Human protein_coding chr9:37732366 chr9:37732369 synonymous SNV . 0 24 hm5C_associated_SNPs_54491 0 0 0 0 1 FRMPD1 chr9:37732301 3'AG 37732301 Downstream 69bp
chr7 141763343 141763343 1 + A T LUAD 141763339 + 141763319 141763359 41 CTTCGTGAATGGGGCAGTTTCTCCAGGCTGCAGGGACGCCT CTTCGTGAATGGGGCAGTTTCTCCTGGCTGCAGGGACGCCT < 41bp 0.834470812975219 0.533729693735194 0.9585359 0.3191453 prediction 0.60148223848005 Functional Loss - MGAM ENSG00000257335 CDS Human protein_coding chr7:141763339 chr7:141763343 synonymous SNV . 0 25 hm5C_associated_SNPs_54492 0 0 0 0 2 MGAM chr7:141763299 3'AG 141763299 Downstream 45bp
chr7 141763343 141763343 1 + A T LUAD 141763339 + 141763319 141763359 41 CTTCGTGAATGGGGCAGTTTCTCCAGGCTGCAGGGACGCCT CTTCGTGAATGGGGCAGTTTCTCCTGGCTGCAGGGACGCCT < 41bp 0.834470812975219 0.533729693735194 0.9585359 0.3191453 prediction 0.60148223848005 Functional Loss - MGAM ENSG00000257335 CDS Human protein_coding chr7:141763339 chr7:141763343 synonymous SNV . 0 25 hm5C_associated_SNPs_54492 0 0 0 0 2 MGAM chr7:141763386 5'GT 141763386 Upstream 44bp
chr20 37272390 37272390 1 + A T rs115554363 37272386 + 37272366 37272406 41 GGAAGGTGGTGGCCCGGGAACAGCACAACAAGATGACTCTG GGAAGGTGGTGGCCCGGGAACAGCTCAACAAGATGACTCTG < 41bp 0.824079389547461 0.52336410453759 0.5736794 0.3546179 prediction 0.601430570019741 Functional Loss - ARHGAP40 ENSG00000124143 CDS Human protein_coding chr20:37272386 chr20:37272390 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_54494 0 0 0 0 1 ARHGAP40 chr20:37272347 3'AG 37272347 Downstream 44bp
chr11 61250258 61250258 1 + G T rs575487688 61250255 + 61250235 61250275 41 AGGCTATGGGCGGGAGAAGCCCAGTGCGGGTCCCCCCACCA AGGCTATGGGCGGGAGAAGCCCATTGCGGGTCCCCCCACCA < 41bp 0.800714473437447 0.421139312240563 0.38566378 0.26456824 prediction 0.601428946874895 Functional Loss - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61250255 chr11:61250258 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_54495 0 0 0 0 1 PPP1R32 chr11:61250280 5'GT 61250280 Upstream 23bp
chr1 26509747 26509747 1 + G T ACC 26509745 + 26509725 26509765 41 TTGTGTCCCAAGTGGACACCCAGGTGAGAGCCCCACACCCT TTGTGTCCCAAGTGGACACCCATGTGAGAGCCCCACACCCT < 41bp 0.800706654266581 0.462954833420878 0.9363524 0.4748902 prediction 0.601413308533162 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26509745 chr1:26509747 nonsynonymous SNV 0.693 2 23 hm5C_associated_SNPs_54497 0 0 0 0 2 CNKSR1 chr1:26509688 3'AG 26509688 Downstream 60bp
chr1 26509747 26509747 1 + G T ACC 26509745 + 26509725 26509765 41 TTGTGTCCCAAGTGGACACCCAGGTGAGAGCCCCACACCCT TTGTGTCCCAAGTGGACACCCATGTGAGAGCCCCACACCCT < 41bp 0.800706654266581 0.462954833420878 0.9363524 0.4748902 prediction 0.601413308533162 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26509745 chr1:26509747 nonsynonymous SNV 0.693 2 23 hm5C_associated_SNPs_54497 0 0 0 0 2 CNKSR1 chr1:26509747 5'GT 26509747 Upstream 1bp
chr15 41763442 41763442 1 + G T CESC 41763440 + 41763420 41763460 41 TGAATCGGGTTCGATTATCACGGCATAAGCTAGAACGCTGG TGAATCGGGTTCGATTATCACGTCATAAGCTAGAACGCTGG < 41bp 0.800705191305834 0.484432639917021 0.88183236 0.44524357 prediction 0.601410382611668 Functional Loss - RTF1 ENSG00000137815 CDS Human protein_coding chr15:41763440 chr15:41763442 synonymous SNV . 0 23 hm5C_associated_SNPs_54498 0 0 1 0 1 RTF1 chr15:41763370 3'AG 41763370 Downstream 73bp
chr11 63974949 63974949 1 + G T LUAD 63974946 + 63974926 63974966 41 GTCGGTCACCCTGCGGGTCACTGGGGAGTCGCACATCGGCG GTCGGTCACCCTGCGGGTCACTGTGGAGTCGCACATCGGCG < 41bp 0.893746427674638 0.593042357448152 0.8925744 0.19759667 prediction 0.60140814045297 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63974946 chr11:63974949 nonsynonymous SNV 0.978 2 24 hm5C_associated_SNPs_54499 0 0 0 0 1 FERMT3 chr11:63974996 5'GT 63974996 Upstream 48bp
chr11 120983866 120983866 1 + G T LUAD 120983863 + 120983843 120983883 41 TTACGAAATCAACTGGACCACGGGGACGGCGAGTGGCGGCG TTACGAAATCAACTGGACCACGGTGACGGCGAGTGGCGGCG < 41bp 0.800698818918197 0.415698589381253 0.8738527 0.33877075 prediction 0.601397637836393 Functional Loss - TECTA ENSG00000109927 CDS Human protein_coding chr11:120983863 chr11:120983866 nonsynonymous SNV 0.051 4 24 hm5C_associated_SNPs_54500 0 0 0 0 2 TECTA chr11:120983781 3'AG 120983781 Downstream 86bp
chr11 120983866 120983866 1 + G T LUAD 120983863 + 120983843 120983883 41 TTACGAAATCAACTGGACCACGGGGACGGCGAGTGGCGGCG TTACGAAATCAACTGGACCACGGTGACGGCGAGTGGCGGCG < 41bp 0.800698818918197 0.415698589381253 0.8738527 0.33877075 prediction 0.601397637836393 Functional Loss - TECTA ENSG00000109927 CDS Human protein_coding chr11:120983863 chr11:120983866 nonsynonymous SNV 0.051 4 24 hm5C_associated_SNPs_54500 0 0 0 0 2 TECTA chr11:120983918 5'GT 120983918 Upstream 53bp
chr14 67567588 67567588 1 + G T LIHC 67567585 + 67567565 67567605 41 TCTCACAGCTGCTGATGGCCCAGGAGATCGTTTCATCATTG TCTCACAGCTGCTGATGGCCCAGTAGATCGTTTCATCATTG < 41bp 0.80068718605291 0.486489872388889 0.8332281 0.13520998 prediction 0.60137437210582 Functional Loss - GPHN ENSG00000171723 CDS Human protein_coding chr14:67567585 chr14:67567588 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54504 0 0 0 0 2 GPHN chr14:67567573 3'AG 67567573 Downstream 16bp
chr14 67567588 67567588 1 + G T LIHC 67567585 + 67567565 67567605 41 TCTCACAGCTGCTGATGGCCCAGGAGATCGTTTCATCATTG TCTCACAGCTGCTGATGGCCCAGTAGATCGTTTCATCATTG < 41bp 0.80068718605291 0.486489872388889 0.8332281 0.13520998 prediction 0.60137437210582 Functional Loss - GPHN ENSG00000171723 CDS Human protein_coding chr14:67567585 chr14:67567588 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54504 0 0 0 0 2 GPHN chr14:67567628 5'GT 67567628 Upstream 41bp
chr7 156468398 156468398 1 + A C STAD 156468394 + 156468374 156468414 41 CCCGCCTCCTCCTCAGTTCACAGAAATCAGCCACCGCATCC CCCGCCTCCTCCTCAGTTCACAGACATCAGCCACCGCATCC < 41bp 0.800680548836866 0.446036859159141 0.11793518 0.06789109 prediction 0.601361097673732 Functional Loss - RNF32 ENSG00000105982 CDS Human protein_coding chr7:156468394 chr7:156468398 nonsynonymous SNV 0.971 2 25 hm5C_associated_SNPs_54505 0 0 0 0 1 RNF32 chr7:156468390 3'AG 156468390 Downstream 9bp
chr16 90160912 90160912 1 + G T LUAD 90160909 + 90160889 90160929 41 CCTGGGAACGCGGCCCTCCCCTCGCTCATGCCCTCCCGCCC CCTGGGAACGCGGCCCTCCCCTCTCTCATGCCCTCCCGCCC < 41bp 0.800677703361156 0.449369988096991 0.74075687 0.3238719 prediction 0.601355406722313 Functional Loss - PRDM7;FAM157B ENSG00000261812 intronic Human transcribed_unprocessed_pseudogene chr16:90160909 chr16:90160912 . . 0 24 hm5C_associated_SNPs_54506 0 0 0 0 1 PRDM7;FAM157B chr16:90160943 5'GT 90160943 Upstream 32bp
chr12 10168296 10168296 1 + G T LUAD 10168294 + 10168274 10168314 41 TCCTCTGGCAGAAGTTGGTTCTGGGAAGATGGCTCTGTTCC TCCTCTGGCAGAAGTTGGTTCTTGGAAGATGGCTCTGTTCC < 41bp 0.809655965813314 0.509024338691725 0.9344727 0.917603 prediction 0.601263254243179 Functional Loss - CLEC12B ENSG00000256660 CDS Human protein_coding chr12:10168294 chr12:10168296 nonsynonymous SNV 0.949 2 23 hm5C_associated_SNPs_54510 0 0 0 0 2 CLEC12B chr12:10168211 3'AG 10168211 Downstream 86bp
chr12 10168296 10168296 1 + G T LUAD 10168294 + 10168274 10168314 41 TCCTCTGGCAGAAGTTGGTTCTGGGAAGATGGCTCTGTTCC TCCTCTGGCAGAAGTTGGTTCTTGGAAGATGGCTCTGTTCC < 41bp 0.809655965813314 0.509024338691725 0.9344727 0.917603 prediction 0.601263254243179 Functional Loss - CLEC12B ENSG00000256660 CDS Human protein_coding chr12:10168294 chr12:10168296 nonsynonymous SNV 0.949 2 23 hm5C_associated_SNPs_54510 0 0 0 0 2 CLEC12B chr12:10168326 5'GT 10168326 Upstream 31bp
chr1 179632616 179632616 1 + G T UCEC 179632614 + 179632594 179632634 41 GAAAAAAATACTGGCACAAACAGGACTCAAAAGGTAAATGT GAAAAAAATACTGGCACAAACATGACTCAAAAGGTAAATGT < 41bp 0.800629330079266 0.485788831684089 0.7630489 0.25759664 prediction 0.601258660158531 Functional Loss - TDRD5 ENSG00000162782 CDS Human protein_coding chr1:179632614 chr1:179632616 nonsynonymous SNV 0.078 0 23 hm5C_associated_SNPs_54511 0 0 0 0 1 TDRD5 chr1:179632626 5'GT 179632626 Upstream 11bp
chr2 48701891 48701891 1 + G T UCEC 48701889 + 48701869 48701909 41 CCAGGAATCTAGAGCTGTCCCAGGACATGAAAAAAATGACA CCAGGAATCTAGAGCTGTCCCATGACATGAAAAAAATGACA < 41bp 0.820741622828595 0.520176752802959 0.4539345 0.15295663 prediction 0.601129740051272 Functional Loss - PPP1R21 ENSG00000162869 CDS Human protein_coding chr2:48701889 chr2:48701891 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_54516 0 0 1 0 2 PPP1R21 chr2:48701822 3'AG 48701822 Downstream 70bp
chr2 48701891 48701891 1 + G T UCEC 48701889 + 48701869 48701909 41 CCAGGAATCTAGAGCTGTCCCAGGACATGAAAAAAATGACA CCAGGAATCTAGAGCTGTCCCATGACATGAAAAAAATGACA < 41bp 0.820741622828595 0.520176752802959 0.4539345 0.15295663 prediction 0.601129740051272 Functional Loss - PPP1R21 ENSG00000162869 CDS Human protein_coding chr2:48701889 chr2:48701891 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_54516 0 0 1 0 2 PPP1R21 chr2:48701958 5'GT 48701958 Upstream 68bp
chr5 6746493 6746493 1 + G T SARC 6746491 + 6746471 6746511 41 GAGATCATGAAAGCCATGACCAGCGGGTACAGACCGTCGAT GAGATCATGAAAGCCATGACCATCGGGTACAGACCGTCGAT < 41bp 0.838936233071612 0.538389630963977 0.8512019 0.25440386 prediction 0.60109320421527 Functional Loss - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6746491 chr5:6746493 nonsynonymous SNV 0.976 2 23 hm5C_associated_SNPs_54517 0 0 1 0 1 PAPD7 chr5:6746540 5'GT 6746540 Upstream 48bp
chr19 51359636 51359636 1 + G T KIRP 51359634 + 51359614 51359654 41 GCACCCCCAGTGGGTCCTCACAGCTGCCCACTGCATCAGGA GCACCCCCAGTGGGTCCTCACATCTGCCCACTGCATCAGGA < 41bp 0.800533092652631 0.457911370530787 0.44782978 0.2935732 prediction 0.601066185305262 Functional Loss - KLK3 ENSG00000142515 CDS Human protein_coding chr19:51359634 chr19:51359636 nonsynonymous SNV 0.986 2 23 hm5C_associated_SNPs_54519 0 0 0 0 1 KLK3 chr19:51359655 5'GT 51359655 Upstream 20bp
chrX 102840581 102840581 1 + G T SARC 102840579 + 102840559 102840599 41 GTGCGGGCCTTCCACGCTGCCAGCGGAACACTGGAATGGCG GTGCGGGCCTTCCACGCTGCCATCGGAACACTGGAATGGCG < 41bp 0.803586511501304 0.503070220544105 0.85198 0.43327382 prediction 0.601032581914397 Functional Loss - TCEAL4 ENSG00000133142 CDS Human protein_coding chrX:102840579 chrX:102840581 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_54520 0 0 1 0 1 TCEAL4 chrX:102840611 5'GT 102840611 Upstream 31bp
chr12 250336 250336 1 - C A LUSC 250339 - 250319 250359 41 GGCCACACCGATGGGGGTGTCCGGGATGAAGCCGCGTGAGA GGCCACACCGATGGGGGTGTCCGTGATGAAGCCGCGTGAGA < 41bp 0.800488792894592 0.413925150176968 0.8821982 0.4340829 prediction 0.600977585789184 Functional Loss - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:250339 chr12:250336 nonsynonymous SNV 0.854 2 24 hm5C_associated_SNPs_54522 0 0 0 0 1 IQSEC3 chr12:250410 3'AG 250410 Downstream 75bp
chr1 148932888 148932888 1 + G T HNSC 148932885 + 148932865 148932905 41 GGTGGGAGACGGGTGAGGTACAGGCTCAGTCTGCGGCCAAG GGTGGGAGACGGGTGAGGTACAGTCTCAGTCTGCGGCCAAG < 41bp 0.886809670392722 0.586334668269558 0.7009043 0.20457762 prediction 0.600950004246327 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932885 chr1:148932888 . . 0 24 hm5C_associated_SNPs_54524 0 0 0 1 1 LOC645166 chr1:148932920 5'GT 148932920 Upstream 33bp
chr19 36603843 36603843 1 + A T rs149534478 36603839 + 36603819 36603859 41 GCTTTCATGACGCCTTCGATCTCAAGCGCCACATGAGGACT GCTTTCATGACGCCTTCGATCTCATGCGCCACATGAGGACT < 41bp 0.831830584432154 0.53137524698089 0.05094701 0.064620525 prediction 0.600910674902527 Functional Loss - OVOL3 ENSG00000105261 CDS Human protein_coding chr19:36603839 chr19:36603843 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_54525 0 0 1 0 1 OVOL3 chr19:36603866 5'GT 36603866 Upstream 24bp
chr2 28820876 28820876 1 + G T ESCA 28820874 + 28820854 28820894 41 CTTGCTCACTCCCTACAGTGCAGGAGGGGACGGCTCCCTGG CTTGCTCACTCCCTACAGTGCATGAGGGGACGGCTCCCTGG < 41bp 0.800402819964844 0.477587057217353 0.70897704 0.15415841 prediction 0.600805639929687 Functional Loss - PLB1 ENSG00000163803 CDS Human protein_coding chr2:28820874 chr2:28820876 stopgain 0.144 1 23 hm5C_associated_SNPs_54529 0 0 0 0 2 PLB1 chr2:28820872 3'AG 28820872 Downstream 5bp
chr2 28820876 28820876 1 + G T ESCA 28820874 + 28820854 28820894 41 CTTGCTCACTCCCTACAGTGCAGGAGGGGACGGCTCCCTGG CTTGCTCACTCCCTACAGTGCATGAGGGGACGGCTCCCTGG < 41bp 0.800402819964844 0.477587057217353 0.70897704 0.15415841 prediction 0.600805639929687 Functional Loss - PLB1 ENSG00000163803 CDS Human protein_coding chr2:28820874 chr2:28820876 stopgain 0.144 1 23 hm5C_associated_SNPs_54529 0 0 0 0 2 PLB1 chr2:28820915 5'GT 28820915 Upstream 40bp
chr3 40223855 40223855 1 + G T LUAD 40223852 + 40223832 40223872 41 GCTGGAAGAGTGTGGACAGGCTGGATGAAACAAGTAACTGT GCTGGAAGAGTGTGGACAGGCTGTATGAAACAAGTAACTGT < 41bp 0.851605457230577 0.551205638381329 0.19029313 0.08812937 prediction 0.600799637698496 Functional Loss - MYRIP ENSG00000170011 CDS Human protein_coding chr3:40223852 chr3:40223855 nonsynonymous SNV 0.823 1 24 hm5C_associated_SNPs_54530 0 0 0 0 1 MYRIP chr3:40223864 5'GT 40223864 Upstream 10bp
chr1 196927185 196927185 1 + G T rs41257904 196927183 + 196927163 196927203 41 ATGTAGAAACGGACAATGGTCAGAACCACCAAAATGCTTAG ATGTAGAAACGGACAATGGTCATAACCACCAAAATGCTTAG < 41bp 0.800386338389032 0.495335483167573 0.22499165 0.042687684 prediction 0.600772676778063 Functional Loss - CFHR2 ENSG00000080910 CDS Human protein_coding chr1:196927183 chr1:196927185 stopgain 0.793 0 23 hm5C_associated_SNPs_54532 0 0 0 0 1 CFHR2 chr1:196927203 5'GT 196927203 Upstream 19bp
chr19 56565087 56565087 1 + A T COAD 56565083 + 56565063 56565103 41 GGAGCAGACACCTGAAGAGCCTGGATCTCACGGACAATGCC GGAGCAGACACCTGAAGAGCCTGGTTCTCACGGACAATGCC < 41bp 0.800374369865979 0.496258741472461 0.35574377 0.19665429 prediction 0.600748739731957 Functional Loss - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56565083 chr19:56565087 nonsynonymous SNV 0.010 3 25 hm5C_associated_SNPs_54533 0 0 0 0 2 NLRP5 chr19:56565004 3'AG 56565004 Downstream 84bp
chr19 56565087 56565087 1 + A T COAD 56565083 + 56565063 56565103 41 GGAGCAGACACCTGAAGAGCCTGGATCTCACGGACAATGCC GGAGCAGACACCTGAAGAGCCTGGTTCTCACGGACAATGCC < 41bp 0.800374369865979 0.496258741472461 0.35574377 0.19665429 prediction 0.600748739731957 Functional Loss - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56565083 chr19:56565087 nonsynonymous SNV 0.010 3 25 hm5C_associated_SNPs_54533 0 0 0 0 2 NLRP5 chr19:56565174 5'GT 56565174 Upstream 88bp
chr2 181927579 181927579 1 + G T LUAD 181927576 + 181927556 181927596 41 ACCAACAGAGCAGAACACGACAGGATAGCCAGACAGTGGAC ACCAACAGAGCAGAACACGACAGTATAGCCAGACAGTGGAC < 41bp 0.871082975282909 0.570723236161976 0.7871294 0.2371887 prediction 0.600719478241866 Functional Loss - UBE2E3 ENSG00000170035 CDS Human protein_coding chr2:181927576 chr2:181927579 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_54536 0 0 1 0 1 UBE2E3 chr2:181927518 3'AG 181927518 Downstream 62bp
chr11 116701533 116701533 1 + G T LUAD 116701530 + 116701510 116701550 41 CCTCCCTTCTCAGCTTCATGCAGGGTTACATGAAGCACGCC CCTCCCTTCTCAGCTTCATGCAGTGTTACATGAAGCACGCC < 41bp 0.892962401298158 0.592623939720311 0.8693702 0.15133402 prediction 0.600676923155693 Functional Loss - APOC3 ENSG00000110245 CDS Human protein_coding chr11:116701530 chr11:116701533 nonsynonymous SNV 0.168 3 24 hm5C_associated_SNPs_54537 0 0 1 0 2 APOC3 chr11:116701489 3'AG 116701489 Downstream 45bp
chr11 116701533 116701533 1 + G T LUAD 116701530 + 116701510 116701550 41 CCTCCCTTCTCAGCTTCATGCAGGGTTACATGAAGCACGCC CCTCCCTTCTCAGCTTCATGCAGTGTTACATGAAGCACGCC < 41bp 0.892962401298158 0.592623939720311 0.8693702 0.15133402 prediction 0.600676923155693 Functional Loss - APOC3 ENSG00000110245 CDS Human protein_coding chr11:116701530 chr11:116701533 nonsynonymous SNV 0.168 3 24 hm5C_associated_SNPs_54537 0 0 1 0 2 APOC3 chr11:116701612 5'GT 116701612 Upstream 80bp
chr1 192545461 192545461 1 + G T LUAD 192545458 + 192545438 192545478 41 TGAGATCTATGATCCCACATCTGGAATCTGGAATGAAATCT TGAGATCTATGATCCCACATCTGTAATCTGGAATGAAATCT < 41bp 0.854368410680056 0.554056499466383 0.16860706 0.13125536 prediction 0.600623822427346 Functional Loss - RGS1 ENSG00000090104 CDS Human protein_coding chr1:192545458 chr1:192545461 stopgain 0.999 0 24 hm5C_associated_SNPs_54539 0 0 0 0 2 RGS1 chr1:192545415 3'AG 192545415 Downstream 47bp
chr1 192545461 192545461 1 + G T LUAD 192545458 + 192545438 192545478 41 TGAGATCTATGATCCCACATCTGGAATCTGGAATGAAATCT TGAGATCTATGATCCCACATCTGTAATCTGGAATGAAATCT < 41bp 0.854368410680056 0.554056499466383 0.16860706 0.13125536 prediction 0.600623822427346 Functional Loss - RGS1 ENSG00000090104 CDS Human protein_coding chr1:192545458 chr1:192545461 stopgain 0.999 0 24 hm5C_associated_SNPs_54539 0 0 0 0 2 RGS1 chr1:192545495 5'GT 192545495 Upstream 35bp
chr11 47587496 47587496 1 + G T UCEC 47587493 + 47587473 47587513 41 AACGTGCGCGGGGTGATCACCATGAACGAGGAGTACGAGAC AACGTGCGCGGGGTGATCACCATTAACGAGGAGTACGAGAC < 41bp 0.800301810825519 0.464119724542886 0.315131 0.045040876 prediction 0.600603621651039 Functional Loss - PTPMT1 ENSG00000110536 CDS Human protein_coding chr11:47587493 chr11:47587496 stopgain 1.000 1 24 hm5C_associated_SNPs_54540 0 0 1 0 2 PTPMT1 chr11:47587458 3'AG 47587458 Downstream 39bp
chr11 47587496 47587496 1 + G T UCEC 47587493 + 47587473 47587513 41 AACGTGCGCGGGGTGATCACCATGAACGAGGAGTACGAGAC AACGTGCGCGGGGTGATCACCATTAACGAGGAGTACGAGAC < 41bp 0.800301810825519 0.464119724542886 0.315131 0.045040876 prediction 0.600603621651039 Functional Loss - PTPMT1 ENSG00000110536 CDS Human protein_coding chr11:47587493 chr11:47587496 stopgain 1.000 1 24 hm5C_associated_SNPs_54540 0 0 1 0 2 PTPMT1 chr11:47587538 5'GT 47587538 Upstream 43bp
chr6 31675821 31675821 1 + G T LUAD 31675819 + 31675799 31675839 41 TGCCCTGCTCTTGGTGTGTCCTGGGGAGGGGCTTTCTGAGC TGCCCTGCTCTTGGTGTGTCCTTGGGAGGGGCTTTCTGAGC < 41bp 0.800285923330574 0.489784622274004 0.89726365 0.6663308 prediction 0.600571846661149 Functional Loss - LY6G6F ENSG00000204424;ENSG00000250641 CDS Human other chr6:31675819 chr6:31675821 nonsynonymous SNV 0.518 2 23 hm5C_associated_SNPs_54541 0 0 0 0 1 LY6G6F chr6:31675911 5'GT 31675911 Upstream 91bp
chr10 99358577 99358577 1 + G T PRAD 99358575 + 99358555 99358595 41 GGCGAGTTTCCTTTCCTGACCAGCAGTGAGCGCCTCGAGGT GGCGAGTTTCCTTTCCTGACCATCAGTGAGCGCCTCGAGGT < 41bp 0.80028432808541 0.477961456065824 0.31745708 0.120507985 prediction 0.60056865617082 Functional Loss - HOGA1 ENSG00000241935 CDS Human protein_coding chr10:99358575 chr10:99358577 nonsynonymous SNV 0.990 2 23 hm5C_associated_SNPs_54543 0 0 0 0 1 HOGA1 chr10:99358532 3'AG 99358532 Downstream 46bp
chr10 121212755 121212755 1 + G T UCEC 121212752 + 121212732 121212772 41 AACCACCCTCCGGAACCGCCCAAGAAAGGGCTGCTCCAGAG AACCACCCTCCGGAACCGCCCAATAAAGGGCTGCTCCAGAG < 41bp 0.800277389108657 0.440629944108289 0.410805 0.05622524 prediction 0.600554778217313 Functional Loss - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121212752 chr10:121212755 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_54544 0 0 0 0 2 GRK5 chr10:121212657 3'AG 121212657 Downstream 99bp
chr10 121212755 121212755 1 + G T UCEC 121212752 + 121212732 121212772 41 AACCACCCTCCGGAACCGCCCAAGAAAGGGCTGCTCCAGAG AACCACCCTCCGGAACCGCCCAATAAAGGGCTGCTCCAGAG < 41bp 0.800277389108657 0.440629944108289 0.410805 0.05622524 prediction 0.600554778217313 Functional Loss - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121212752 chr10:121212755 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_54544 0 0 0 0 2 GRK5 chr10:121212788 5'GT 121212788 Upstream 34bp
chr14 60756587 60756587 1 + G T UCEC 60756584 + 60756564 60756604 41 CCATGTGATGCGCACATTAGCGAGTGAGAACATCCCCAGCC CCATGTGATGCGCACATTAGCGATTGAGAACATCCCCAGCC < 41bp 0.872295804158454 0.572025259477651 0.89711726 0.10648051 prediction 0.600541089361607 Functional Loss - PPM1A ENSG00000100614 CDS Human protein_coding chr14:60756584 chr14:60756587 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_54545 0 0 1 0 2 PPM1A chr14:60756524 3'AG 60756524 Downstream 64bp
chr14 60756587 60756587 1 + G T UCEC 60756584 + 60756564 60756604 41 CCATGTGATGCGCACATTAGCGAGTGAGAACATCCCCAGCC CCATGTGATGCGCACATTAGCGATTGAGAACATCCCCAGCC < 41bp 0.872295804158454 0.572025259477651 0.89711726 0.10648051 prediction 0.600541089361607 Functional Loss - PPM1A ENSG00000100614 CDS Human protein_coding chr14:60756584 chr14:60756587 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_54545 0 0 1 0 2 PPM1A chr14:60756632 5'GT 60756632 Upstream 46bp
chr22 31523954 31523954 1 + G T LUAD 31523952 + 31523932 31523972 41 AACAGCCTCGTGTTCTGGTTCGGGGACCTGAACTTCCGCAT AACAGCCTCGTGTTCTGGTTCGTGGACCTGAACTTCCGCAT < 41bp 0.800262749195192 0.474825359358813 0.9319843 0.42975068 prediction 0.600525498390384 Functional Loss - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31523952 chr22:31523954 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_54546 0 0 0 0 2 INPP5J chr22:31523937 3'AG 31523937 Downstream 18bp
chr22 31523954 31523954 1 + G T LUAD 31523952 + 31523932 31523972 41 AACAGCCTCGTGTTCTGGTTCGGGGACCTGAACTTCCGCAT AACAGCCTCGTGTTCTGGTTCGTGGACCTGAACTTCCGCAT < 41bp 0.800262749195192 0.474825359358813 0.9319843 0.42975068 prediction 0.600525498390384 Functional Loss - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31523952 chr22:31523954 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_54546 0 0 0 0 2 INPP5J chr22:31524048 5'GT 31524048 Upstream 95bp
chr2 71894608 71894608 1 + G T UCEC 71894605 + 71894585 71894625 41 GGTCCCGGAGCACGTGGAGTCACGGCCCCTCTACAGCCCCC GGTCCCGGAGCACGTGGAGTCACTGCCCCTCTACAGCCCCC < 41bp 0.816211043384309 0.515951838005433 0.6439611 0.15088686 prediction 0.600518410757752 Functional Loss - DYSF ENSG00000135636 CDS Human protein_coding chr2:71894605 chr2:71894608 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_54547 0 0 0 0 1 DYSF chr2:71894645 5'GT 71894645 Upstream 38bp
chr16 81944184 81944184 1 + A C STAD 81944180 + 81944160 81944200 41 CCACCATGGAGGGCGGGACCCTGAAATACTACTTGACTGAC CCACCATGGAGGGCGGGACCCTGACATACTACTTGACTGAC < 41bp 0.800227063768823 0.386268907712437 0.73374903 0.3683918 prediction 0.600454127537647 Functional Loss - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81944180 chr16:81944184 nonsynonymous SNV 0.956 5 25 hm5C_associated_SNPs_54550 0 0 1 0 1 PLCG2 chr16:81944125 3'AG 81944125 Downstream 60bp
chr12 113314500 113314500 1 + G T UCEC 113314498 + 113314478 113314518 41 CCCACCCCGAGAGGAGAGAACAGGGGGAGTCGGGGGCTACC CCCACCCCGAGAGGAGAGAACATGGGGAGTCGGGGGCTACC < 41bp 0.862428885732129 0.562213657806581 0.9228411 0.88097656 prediction 0.600430455851097 Functional Loss - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113314498 chr12:113314500 nonsynonymous SNV 0.001 4 23 hm5C_associated_SNPs_54553 0 0 0 0 1 RPH3A chr12:113314447 3'AG 113314447 Downstream 54bp
chr10 12150011 12150011 1 + G T GBM 12150009 + 12149989 12150029 41 CCTGTCGAATAGAGCGTTTCCTGCAGGTAAGGGTAACGTCT CCTGTCGAATAGAGCGTTTCCTTCAGGTAAGGGTAACGTCT < 41bp 0.800214562907064 0.487444776076683 0.073798716 0.080058604 prediction 0.600429125814128 Functional Loss - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12150009 chr10:12150011 synonymous SNV . 0 23 hm5C_associated_SNPs_54554 0 0 1 0 1 DHTKD1 chr10:12150014 5'GT 12150014 Upstream 4bp
chr9 133270701 133270701 1 + G T rs190770030 133270698 + 133270678 133270718 41 GTGGAGGCAGAGCCAGCGCCCAAGATCACGTGGCACCGAGA GTGGAGGCAGAGCCAGCGCCCAATATCACGTGGCACCGAGA < 41bp 0.800213985618025 0.456802464399269 0.8692909 0.13074467 prediction 0.600427971236049 Functional Loss - HMCN2 ENSG00000148357;ENSG00000215428 intergenic Human other chr9:133270698 chr9:133270701 . 0.276 0 24 hm5C_associated_SNPs_54555 0 0 0 0 1 HMCN2 chr9:133270734 5'GT 133270734 Upstream 34bp
chr6 25776935 25776935 1 + G T UCEC 25776933 + 25776913 25776953 41 ATCCTCAGACTCATCACCATCAGGAAACTCTTCACTGCCAT ATCCTCAGACTCATCACCATCATGAAACTCTTCACTGCCAT < 41bp 0.834673855649189 0.534479004181121 0.6688291 0.20615992 prediction 0.600389702936137 Functional Loss - SLC17A4 ENSG00000146039 CDS Human protein_coding chr6:25776933 chr6:25776935 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_54556 0 0 0 0 1 SLC17A4 chr6:25776955 5'GT 25776955 Upstream 21bp
chr3 25833414 25833414 1 + A C STAD 25833410 + 25833390 25833430 41 AAGAAGAGCCCGGATCTATGCAGAAGTTTTGGGCTATGGAC AAGAAGAGCCCGGATCTATGCAGACGTTTTGGGCTATGGAC < 41bp 0.890715461410564 0.590521289608703 0.8543024 0.72015625 prediction 0.600388343603723 Functional Loss - OXSM ENSG00000151093 CDS Human protein_coding chr3:25833410 chr3:25833414 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_54557 0 0 1 0 1 OXSM chr3:25833488 5'GT 25833488 Upstream 75bp
chr5 75621277 75621277 1 + A C KIRC 75621273 + 75621253 75621293 41 TTTGGCTCTCTGGTCAGCATCACCAAATCAATCCCCATCCT TTTGGCTCTCTGGTCAGCATCACCCAATCAATCCCCATCCT < 41bp 0.800193800028246 0.391487436170707 0.12894616 0.11734575 prediction 0.600387600056492 Functional Loss - SV2C ENSG00000122012 CDS Human protein_coding chr5:75621273 chr5:75621277 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_54558 0 0 0 0 1 SV2C chr5:75621189 3'AG 75621189 Downstream 89bp
chr7 99048353 99048353 1 + G T LGG 99048351 + 99048331 99048371 41 TCTGCAGGCACCGGCACACACGGAGAGTCATCTGTGTGAAT TCTGCAGGCACCGGCACACACGTAGAGTCATCTGTGTGAAT < 41bp 0.800189347336829 0.464204115685348 0.89701086 0.20185784 prediction 0.600378694673658 Functional Loss - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99048351 chr7:99048353 synonymous SNV . 0 23 hm5C_associated_SNPs_54559 0 0 1 0 2 CPSF4 chr7:99048325 3'AG 99048325 Downstream 29bp
chr7 99048353 99048353 1 + G T LGG 99048351 + 99048331 99048371 41 TCTGCAGGCACCGGCACACACGGAGAGTCATCTGTGTGAAT TCTGCAGGCACCGGCACACACGTAGAGTCATCTGTGTGAAT < 41bp 0.800189347336829 0.464204115685348 0.89701086 0.20185784 prediction 0.600378694673658 Functional Loss - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99048351 chr7:99048353 synonymous SNV . 0 23 hm5C_associated_SNPs_54559 0 0 1 0 2 CPSF4 chr7:99048418 5'GT 99048418 Upstream 66bp
chr1 161068515 161068515 1 + G T SARC 161068513 + 161068493 161068533 41 CGATACGGTGGTTTTCGACCCAGCTAGGGGCCAGGCCGTAC CGATACGGTGGTTTTCGACCCATCTAGGGGCCAGGCCGTAC < 41bp 0.800175954039816 0.479651046863132 0.17936811 0.07196441 prediction 0.600351908079632 Functional Loss - KLHDC9 ENSG00000162755 CDS Human protein_coding chr1:161068513 chr1:161068515 nonsynonymous SNV 0.037 0 23 hm5C_associated_SNPs_54561 0 0 0 0 1 KLHDC9 chr1:161068456 3'AG 161068456 Downstream 60bp
chr5 43041924 43041924 1 + G T rs193019466 43041921 + 43041901 43041941 41 AATCCGAGGCCACTGGAAACCCGGAGCTGCTGACCAACGAG AATCCGAGGCCACTGGAAACCCGTAGCTGCTGACCAACGAG < 41bp 0.800152322884382 0.463999939608863 0.9113697 0.58387834 prediction 0.600304645768765 Functional Loss - LOC648987 ENSG00000215068 ncRNA_exonic Human antisense chr5:43041921 chr5:43041924 . . 0 24 hm5C_associated_SNPs_54563 0 0 0 0 1 LOC648987 chr5:43041976 5'GT 43041976 Upstream 53bp
chr12 4657926 4657926 1 + A C rs116552921 4657922 + 4657902 4657942 41 AAGAAAAGCAGCATCTAAAGCTGCAGCACAGCAGAGGAAGA AAGAAAAGCAGCATCTAAAGCTGCCGCACAGCAGAGGAAGA < 41bp 0.800130761902288 0.393619810757928 0.21374974 0.20211908 prediction 0.600261523804576 Functional Loss - RAD51AP1 ENSG00000111247 CDS Human protein_coding chr12:4657922 chr12:4657926 synonymous SNV . 0 25 hm5C_associated_SNPs_54564 0 0 1 0 2 RAD51AP1 chr12:4657853 3'AG 4657853 Downstream 74bp
chr12 4657926 4657926 1 + A C rs116552921 4657922 + 4657902 4657942 41 AAGAAAAGCAGCATCTAAAGCTGCAGCACAGCAGAGGAAGA AAGAAAAGCAGCATCTAAAGCTGCCGCACAGCAGAGGAAGA < 41bp 0.800130761902288 0.393619810757928 0.21374974 0.20211908 prediction 0.600261523804576 Functional Loss - RAD51AP1 ENSG00000111247 CDS Human protein_coding chr12:4657922 chr12:4657926 synonymous SNV . 0 25 hm5C_associated_SNPs_54564 0 0 1 0 2 RAD51AP1 chr12:4658002 5'GT 4658002 Upstream 77bp
chr8 134232987 134232987 1 + G T LUAD 134232985 + 134232965 134233005 41 GTCTCTGGTGCCCCCACCCGCGGCGCGTGAGCATACCTGGC GTCTCTGGTGCCCCCACCCGCGTCGCGTGAGCATACCTGGC < 41bp 0.800102855967443 0.460004635777986 0.8709727 0.23931739 prediction 0.600205711934886 Functional Loss - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134232985 chr8:134232987 synonymous SNV . 0 23 hm5C_associated_SNPs_54567 0 0 0 0 1 WISP1 chr8:134233084 5'GT 134233084 Upstream 98bp
chr4 146560633 146560633 1 + G T BRCA 146560630 + 146560610 146560650 41 CTTGTAGAATCAACTCACAGCAGGAAAAAGGAGTTAGCCCA CTTGTAGAATCAACTCACAGCAGTAAAAAGGAGTTAGCCCA < 41bp 0.874088771963136 0.573995731778645 0.84246695 0.39860386 prediction 0.600186080368981 Functional Loss - MMAA ENSG00000151611 CDS Human protein_coding chr4:146560630 chr4:146560633 nonsynonymous SNV 0.984 2 24 hm5C_associated_SNPs_54569 0 0 0 1 1 MMAA chr4:146560730 5'GT 146560730 Upstream 98bp
chr12 113407849 113407849 1 + G T rs7313970 113407847 + 113407827 113407867 41 GCCCTCAGCATGAGGAAATTCAGGGTCCCCTACCAGATGAG GCCCTCAGCATGAGGAAATTCATGGTCCCCTACCAGATGAG < 41bp 0.800040421452628 0.471089538666145 0.90377545 0.1624564 prediction 0.600080842905256 Functional Loss - OAS3 ENSG00000257452 ncRNA_intronic Human protein_coding chr12:113407847 chr12:113407849 . . 0 23 hm5C_associated_SNPs_54574 0 0 0 0 1 OAS3 chr12:113407767 3'AG 113407767 Downstream 83bp
chr8 68864764 68864764 1 + G T LIHC 68864762 + 68864742 68864782 41 ATGTGGGCACGCTGGAGTTCCTGGTGTCGGTGAGTGTCCCC ATGTGGGCACGCTGGAGTTCCTTGTGTCGGTGAGTGTCCCC < 41bp 0.824662445106447 0.524642243337127 0.4320432 0.08213794 prediction 0.600040403538641 Functional Loss - PREX2 ENSG00000046889 CDS Human protein_coding chr8:68864762 chr8:68864764 synonymous SNV . 0 23 hm5C_associated_SNPs_54575 0 0 0 0 1 PREX2 chr8:68864770 5'GT 68864770 Upstream 7bp
chr4 83369174 83369174 1 + G T LUSC 83369172 + 83369152 83369192 41 ATGTCAGTCTTTTGAGGAAACAGGTTGGGACATTTCTGTCT ATGTCAGTCTTTTGAGGAAACATGTTGGGACATTTCTGTCT < 41bp 0.800019688502954 0.481338445844648 0.23083496 0.16562763 prediction 0.600039377005908 Functional Loss - ENOPH1 ENSG00000145293 CDS Human protein_coding chr4:83369172 chr4:83369174 nonsynonymous SNV 0.951 4 23 hm5C_associated_SNPs_54576 0 0 1 0 1 ENOPH1 chr4:83369174 5'GT 83369174 Upstream 1bp
chr3 113677256 113677256 1 + G T CESC 113677254 + 113677234 113677274 41 GTGGTACTCTGTGATCATCACAGCAGGCATGGCCTACATCT GTGGTACTCTGTGATCATCACATCAGGCATGGCCTACATCT < 41bp 0.812541737566105 0.512522175457071 0.3411279 0.1508618 prediction 0.600039124218067 Functional Loss - ZDHHC23 ENSG00000184307 CDS Human protein_coding chr3:113677254 chr3:113677256 nonsynonymous SNV 0.993 0 23 hm5C_associated_SNPs_54577 0 0 0 0 1 ZDHHC23 chr3:113677210 3'AG 113677210 Downstream 47bp
chr17 31324519 31324519 1 + G T UCEC 31324516 + 31324496 31324536 41 TCTGTGCCATGAAGATAACCCAAGAGCCTCAGGGTCTGGGT TCTGTGCCATGAAGATAACCCAATAGCCTCAGGGTCTGGGT < 41bp 0.884873010152057 0.584856337298857 0.098412216 0.049292237 prediction 0.6000333457064 Functional Loss - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31324516 chr17:31324519 stopgain 0.010 0 24 hm5C_associated_SNPs_54578 0 0 0 3 2 SPACA3 chr17:31324463 3'AG 31324463 Downstream 57bp
chr17 31324519 31324519 1 + G T UCEC 31324516 + 31324496 31324536 41 TCTGTGCCATGAAGATAACCCAAGAGCCTCAGGGTCTGGGT TCTGTGCCATGAAGATAACCCAATAGCCTCAGGGTCTGGGT < 41bp 0.884873010152057 0.584856337298857 0.098412216 0.049292237 prediction 0.6000333457064 Functional Loss - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31324516 chr17:31324519 stopgain 0.010 0 24 hm5C_associated_SNPs_54578 0 0 0 3 2 SPACA3 chr17:31324541 5'GT 31324541 Upstream 23bp
chr3 128751762 128751762 1 + A C rs6772392 128751758 + 128751738 128751778 41 GCAGGAGGAGAAGAAGACGCCGGCAGCCGAGGCCAAGACAC GCAGGAGGAGAAGAAGACGCCGGCCGCCGAGGCCAAGACAC < 41bp 0.89844785634879 0.598479403447976 0.8731679 0.7970095 prediction 0.59993690580163 Functional Loss - EFCC1 ENSG00000114654 CDS Human protein_coding chr3:128751758 chr3:128751762 synonymous SNV . 0 25 hm5C_associated_SNPs_54583 0 0 0 0 2 EFCC1 chr3:128751665 3'AG 128751665 Downstream 98bp
chr3 128751762 128751762 1 + A C rs6772392 128751758 + 128751738 128751778 41 GCAGGAGGAGAAGAAGACGCCGGCAGCCGAGGCCAAGACAC GCAGGAGGAGAAGAAGACGCCGGCCGCCGAGGCCAAGACAC < 41bp 0.89844785634879 0.598479403447976 0.8731679 0.7970095 prediction 0.59993690580163 Functional Loss - EFCC1 ENSG00000114654 CDS Human protein_coding chr3:128751758 chr3:128751762 synonymous SNV . 0 25 hm5C_associated_SNPs_54583 0 0 0 0 2 EFCC1 chr3:128751809 5'GT 128751809 Upstream 48bp
chr17 80544048 80544048 1 + G T STAD 80544046 + 80544026 80544066 41 CCCCTCCTAAGGCAGAGGCCCAGGAGAATGGAGACCACAGG CCCCTCCTAAGGCAGAGGCCCATGAGAATGGAGACCACAGG < 41bp 0.799962061892649 0.471701673543955 0.886383 0.45189235 prediction 0.599924123785298 Functional Loss - FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80544046 chr17:80544048 nonsynonymous SNV 0.633 2 23 hm5C_associated_SNPs_54584 0 0 1 0 1 FOXK2 chr17:80544076 5'GT 80544076 Upstream 29bp
chr1 168282019 168282019 1 + A C LUSC 168282015 + 168281995 168282035 41 GGGCCAGGCCCGGAGGTGCACGCCAGCACCCCAGGAGCATT GGGCCAGGCCCGGAGGTGCACGCCCGCACCCCAGGAGCATT < 41bp 0.900102262852503 0.600142463838156 0.2923754 0.11934298 prediction 0.599919598028694 Functional Loss - TBX19 ENSG00000143178 CDS Human protein_coding chr1:168282015 chr1:168282019 nonsynonymous SNV 0.009 2 25 hm5C_associated_SNPs_54585 0 0 0 0 1 TBX19 chr1:168281946 3'AG 168281946 Downstream 74bp
chr14 100151060 100151060 1 + G T rs139560349 100151058 + 100151038 100151078 41 ACTCACAGCCGCAGCAGCTGCTGGGCGCCCACCGCGCACAG ACTCACAGCCGCAGCAGCTGCTTGGCGCCCACCGCGCACAG < 41bp 0.849820163795151 0.549885856024717 0.89290595 0.1628277 prediction 0.599868615540867 Functional Loss - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100151058 chr14:100151060 unknown . 0 23 hm5C_associated_SNPs_54586 0 0 0 0 1 CYP46A1 chr14:100151118 5'GT 100151118 Upstream 59bp
chr5 167933794 167933794 1 + G T LUSC 167933791 + 167933771 167933811 41 TTGGTATGACCCTAAAGTAACTCGAGTCTTCCATGCTGGAT TTGGTATGACCCTAAAGTAACTCTAGTCTTCCATGCTGGAT < 41bp 0.863680389046321 0.563783465434258 0.15933496 0.34397733 prediction 0.599793847224126 Functional Loss - RARS ENSG00000113643 CDS Human protein_coding chr5:167933791 chr5:167933794 nonsynonymous SNV 0.691 0 24 hm5C_associated_SNPs_54591 0 0 1 0 2 RARS chr5:167933727 3'AG 167933727 Downstream 68bp
chr5 167933794 167933794 1 + G T LUSC 167933791 + 167933771 167933811 41 TTGGTATGACCCTAAAGTAACTCGAGTCTTCCATGCTGGAT TTGGTATGACCCTAAAGTAACTCTAGTCTTCCATGCTGGAT < 41bp 0.863680389046321 0.563783465434258 0.15933496 0.34397733 prediction 0.599793847224126 Functional Loss - RARS ENSG00000113643 CDS Human protein_coding chr5:167933791 chr5:167933794 nonsynonymous SNV 0.691 0 24 hm5C_associated_SNPs_54591 0 0 1 0 2 RARS chr5:167933836 5'GT 167933836 Upstream 43bp
chr6 32411199 32411199 1 + G T UCEC 32411197 + 32411177 32411217 41 ACTGAGGACGTTTACGACTGCAGGGTGGAGCACTGGGGCTT ACTGAGGACGTTTACGACTGCATGGTGGAGCACTGGGGCTT < 41bp 0.811360275266258 0.511465507880212 0.8939053 0.36323953 prediction 0.599789534772093 Functional Loss - HLA-DRA ENSG00000204287 CDS Human protein_coding chr6:32411197 chr6:32411199 nonsynonymous SNV 0.199 1 23 hm5C_associated_SNPs_54592 0 0 0 0 1 HLA-DRA chr6:32411243 5'GT 32411243 Upstream 45bp
chr12 58140501 58140501 1 + G T HNSC 58140499 + 58140479 58140519 41 ACAAGATTATGATTTCTGCACTGCAGTGAGTGTGTTGGGGG ACAAGATTATGATTTCTGCACTTCAGTGAGTGTGTTGGGGG < 41bp 0.802882088651871 0.502988615011909 0.07206589 0.054975748 prediction 0.599786947279924 Functional Loss - TSPAN31 ENSG00000135452 CDS Human protein_coding chr12:58140499 chr12:58140501 nonsynonymous SNV 0.979 2 23 hm5C_associated_SNPs_54593 0 0 1 0 1 TSPAN31 chr12:58140503 5'GT 58140503 Upstream 3bp
chr19 40504258 40504258 1 + G T LUAD 40504255 + 40504235 40504275 41 TGCAGGTGGACCCTCCTCTTCACGGGCCTCCAAATGACTTT TGCAGGTGGACCCTCCTCTTCACTGGCCTCCAAATGACTTT < 41bp 0.799884648396838 0.433421184326082 0.035690606 0.017761499 prediction 0.599769296793677 Functional Loss - ZNF546 ENSG00000187187 CDS Human protein_coding chr19:40504255 chr19:40504258 nonsynonymous SNV 0.004 1 24 hm5C_associated_SNPs_54595 0 0 0 0 1 ZNF546 chr19:40504317 5'GT 40504317 Upstream 60bp
chr12 49312131 49312131 1 + A T rs142550817 49312127 + 49312107 49312147 41 AAGATCTGTGGAGAAAGTTCCAGGATGTACTCAAGAATTAC AAGATCTGTGGAGAAAGTTCCAGGTTGTACTCAAGAATTAC < 41bp 0.807990064835799 0.508106906101829 0.83066326 0.5504435 prediction 0.599766317467939 Functional Loss - CCDC65 ENSG00000139537 CDS Human protein_coding chr12:49312127 chr12:49312131 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_54596 0 0 0 0 1 CCDC65 chr12:49312058 3'AG 49312058 Downstream 74bp
chr19 44605025 44605025 1 + G T SARC 44605023 + 44605003 44605043 41 TGGGGCTGCTGGACCTTGCTCAGAGGAAGCTGTATCGAGAT TGGGGCTGCTGGACCTTGCTCATAGGAAGCTGTATCGAGAT < 41bp 0.833853143809827 0.533978566915009 0.92168176 0.5782785 prediction 0.599749153789636 Functional Loss - ZNF224 ENSG00000267680 CDS Human protein_coding chr19:44605023 chr19:44605025 nonsynonymous SNV 0.815 3 23 hm5C_associated_SNPs_54597 0 0 1 0 2 ZNF224 chr19:44604954 3'AG 44604954 Downstream 72bp
chr19 44605025 44605025 1 + G T SARC 44605023 + 44605003 44605043 41 TGGGGCTGCTGGACCTTGCTCAGAGGAAGCTGTATCGAGAT TGGGGCTGCTGGACCTTGCTCATAGGAAGCTGTATCGAGAT < 41bp 0.833853143809827 0.533978566915009 0.92168176 0.5782785 prediction 0.599749153789636 Functional Loss - ZNF224 ENSG00000267680 CDS Human protein_coding chr19:44605023 chr19:44605025 nonsynonymous SNV 0.815 3 23 hm5C_associated_SNPs_54597 0 0 1 0 2 ZNF224 chr19:44605080 5'GT 44605080 Upstream 56bp
chr11 82909614 82909614 1 + G T SARC 82909612 + 82909592 82909632 41 GAAATAGTGGTACGTGGAGCCAGCATTAATGAACTTGATGT GAAATAGTGGTACGTGGAGCCATCATTAATGAACTTGATGT < 41bp 0.817281089687955 0.517425187082756 0.111612916 0.06793943 prediction 0.599711805210399 Functional Loss - ANKRD42 ENSG00000137494 CDS Human protein_coding chr11:82909612 chr11:82909614 nonsynonymous SNV 0.978 2 23 hm5C_associated_SNPs_54600 0 0 0 0 2 ANKRD42 chr11:82909521 3'AG 82909521 Downstream 94bp
chr11 82909614 82909614 1 + G T SARC 82909612 + 82909592 82909632 41 GAAATAGTGGTACGTGGAGCCAGCATTAATGAACTTGATGT GAAATAGTGGTACGTGGAGCCATCATTAATGAACTTGATGT < 41bp 0.817281089687955 0.517425187082756 0.111612916 0.06793943 prediction 0.599711805210399 Functional Loss - ANKRD42 ENSG00000137494 CDS Human protein_coding chr11:82909612 chr11:82909614 nonsynonymous SNV 0.978 2 23 hm5C_associated_SNPs_54600 0 0 0 0 2 ANKRD42 chr11:82909684 5'GT 82909684 Upstream 71bp
chr12 132630210 132630210 1 + G T LUAD 132630207 + 132630187 132630227 41 GGCCACCCCTCCTTTCAGGTCAAGGTGGGTCATTGGGCTGG GGCCACCCCTCCTTTCAGGTCAATGTGGGTCATTGGGCTGG < 41bp 0.79985161338007 0.418451500493261 0.8388768 0.40493116 prediction 0.599703226760141 Functional Loss - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132630207 chr12:132630210 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_54601 0 0 1 0 1 NOC4L chr12:132630210 5'GT 132630210 Upstream 1bp
chr17 77709393 77709393 1 + G T LUAD 77709390 + 77709370 77709410 41 TACAAGAAGGAGGCGTTCCCCGAGGCCTTCCACTACGCCAA TACAAGAAGGAGGCGTTCCCCGATGCCTTCCACTACGCCAA < 41bp 0.887286868553599 0.587455299419616 0.9350335 0.6393663 prediction 0.599663138267966 Functional Loss - ENPP7 ENSG00000182156 CDS Human protein_coding chr17:77709390 chr17:77709393 nonsynonymous SNV 0.024 0 24 hm5C_associated_SNPs_54603 0 0 1 0 1 ENPP7 chr17:77709468 5'GT 77709468 Upstream 76bp
chr3 14177355 14177355 1 + A T rs532872056 14177351 + 14177331 14177371 41 GGTGACCAGCTAGTCCCATTCTCCACCAAGTCTGGGGATAC GGTGACCAGCTAGTCCCATTCTCCTCCAAGTCTGGGGATAC < 41bp 0.863927710532732 0.564096480212608 0.9403258 0.13012964 prediction 0.599662460640248 Functional Loss - TMEM43 ENSG00000170876;ENSG00000268279 CDS Human other chr3:14177351 chr3:14177355 nonsynonymous SNV 0.933 3 25 hm5C_associated_SNPs_54604 1 0 1 0 2 TMEM43 chr3:14177307 3'AG 14177307 Downstream 49bp
chr3 14177355 14177355 1 + A T rs532872056 14177351 + 14177331 14177371 41 GGTGACCAGCTAGTCCCATTCTCCACCAAGTCTGGGGATAC GGTGACCAGCTAGTCCCATTCTCCTCCAAGTCTGGGGATAC < 41bp 0.863927710532732 0.564096480212608 0.9403258 0.13012964 prediction 0.599662460640248 Functional Loss - TMEM43 ENSG00000170876;ENSG00000268279 CDS Human other chr3:14177351 chr3:14177355 nonsynonymous SNV 0.933 3 25 hm5C_associated_SNPs_54604 1 0 1 0 2 TMEM43 chr3:14177408 5'GT 14177408 Upstream 54bp
chr12 104490197 104490197 1 + G T UCEC 104490195 + 104490175 104490215 41 CCGTGTAGAGACACATGCTACAGCAACGCCGTTTTCTGTAA CCGTGTAGAGACACATGCTACATCAACGCCGTTTTCTGTAA < 41bp 0.799815070792708 0.485049083669461 0.054823637 0.0657478 prediction 0.599630141585416 Functional Loss - HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104490195 chr12:104490197 nonsynonymous SNV 0.575 0 23 hm5C_associated_SNPs_54607 0 0 1 0 2 HCFC2 chr12:104490138 3'AG 104490138 Downstream 60bp
chr12 104490197 104490197 1 + G T UCEC 104490195 + 104490175 104490215 41 CCGTGTAGAGACACATGCTACAGCAACGCCGTTTTCTGTAA CCGTGTAGAGACACATGCTACATCAACGCCGTTTTCTGTAA < 41bp 0.799815070792708 0.485049083669461 0.054823637 0.0657478 prediction 0.599630141585416 Functional Loss - HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104490195 chr12:104490197 nonsynonymous SNV 0.575 0 23 hm5C_associated_SNPs_54607 0 0 1 0 2 HCFC2 chr12:104490211 5'GT 104490211 Upstream 15bp
chr11 57466821 57466821 1 + G T UCEC 57466819 + 57466799 57466839 41 CTGGGCCGATCGATGTCTTACAGCAGCCAAAAAGCCCAACC CTGGGCCGATCGATGTCTTACATCAGCCAAAAAGCCCAACC < 41bp 0.835602103649564 0.535825214399483 0.14184049 0.07157692 prediction 0.599553778500163 Functional Loss - ZDHHC5 ENSG00000156599 CDS Human protein_coding chr11:57466819 chr11:57466821 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_54613 0 0 0 0 1 ZDHHC5 chr11:57466890 5'GT 57466890 Upstream 70bp
chr20 30345288 30345288 1 + A C UCEC 30345284 + 30345264 30345304 41 CGTTAAGTGGGAGACAATGTCACAAGTTAAAAGCTCTTATT CGTTAAGTGGGAGACAATGTCACACGTTAAAAGCTCTTATT < 41bp 0.799772973862693 0.396728652724818 0.56429607 0.41032732 prediction 0.599545947725386 Functional Loss - TPX2 ENSG00000088325 CDS Human protein_coding chr20:30345284 chr20:30345288 nonsynonymous SNV 0.811 3 25 hm5C_associated_SNPs_54615 0 0 1 0 2 TPX2 chr20:30345210 3'AG 30345210 Downstream 79bp
chr20 30345288 30345288 1 + A C UCEC 30345284 + 30345264 30345304 41 CGTTAAGTGGGAGACAATGTCACAAGTTAAAAGCTCTTATT CGTTAAGTGGGAGACAATGTCACACGTTAAAAGCTCTTATT < 41bp 0.799772973862693 0.396728652724818 0.56429607 0.41032732 prediction 0.599545947725386 Functional Loss - TPX2 ENSG00000088325 CDS Human protein_coding chr20:30345284 chr20:30345288 nonsynonymous SNV 0.811 3 25 hm5C_associated_SNPs_54615 0 0 1 0 2 TPX2 chr20:30345385 5'GT 30345385 Upstream 98bp
chr2 79350017 79350017 1 + G T LUAD 79350014 + 79349994 79350034 41 TCCCTGGTCTCCTACAAGTCCTGGGGCATTGGAGCCCCAAG TCCCTGGTCTCCTACAAGTCCTGTGGCATTGGAGCCCCAAG < 41bp 0.895502602874289 0.595738554145197 0.2129617 0.12491602 prediction 0.599528097458184 Functional Loss - REG1A ENSG00000115386 CDS Human protein_coding chr2:79350014 chr2:79350017 nonsynonymous SNV 0.099 3 24 hm5C_associated_SNPs_54617 0 0 0 0 2 REG1A chr2:79349967 3'AG 79349967 Downstream 51bp
chr2 79350017 79350017 1 + G T LUAD 79350014 + 79349994 79350034 41 TCCCTGGTCTCCTACAAGTCCTGGGGCATTGGAGCCCCAAG TCCCTGGTCTCCTACAAGTCCTGTGGCATTGGAGCCCCAAG < 41bp 0.895502602874289 0.595738554145197 0.2129617 0.12491602 prediction 0.599528097458184 Functional Loss - REG1A ENSG00000115386 CDS Human protein_coding chr2:79350014 chr2:79350017 nonsynonymous SNV 0.099 3 24 hm5C_associated_SNPs_54617 0 0 0 0 2 REG1A chr2:79350078 5'GT 79350078 Upstream 62bp
chr17 29281514 29281514 1 + A T LUAD 29281510 + 29281490 29281530 41 TTGCAGCAGAAAGAACCTTTCAAGAAAAGGTGGTTCGCCCT TTGCAGCAGAAAGAACCTTTCAAGTAAAGGTGGTTCGCCCT < 41bp 0.802210072635784 0.50244722127849 0.84584785 0.36350268 prediction 0.599525702714589 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29281510 chr17:29281514 stopgain 1.000 1 25 hm5C_associated_SNPs_54618 0 0 1 0 3 ADAP2 chr17:29281496 3'AG 29281496 Downstream 19bp
chr17 29281514 29281514 1 + A T LUAD 29281510 + 29281490 29281530 41 TTGCAGCAGAAAGAACCTTTCAAGAAAAGGTGGTTCGCCCT TTGCAGCAGAAAGAACCTTTCAAGTAAAGGTGGTTCGCCCT < 41bp 0.802210072635784 0.50244722127849 0.84584785 0.36350268 prediction 0.599525702714589 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29281510 chr17:29281514 stopgain 1.000 1 25 hm5C_associated_SNPs_54618 0 0 1 0 3 ADAP2 chr17:29281499 3'AG 29281499 Downstream 16bp
chr17 29281514 29281514 1 + A T LUAD 29281510 + 29281490 29281530 41 TTGCAGCAGAAAGAACCTTTCAAGAAAAGGTGGTTCGCCCT TTGCAGCAGAAAGAACCTTTCAAGTAAAGGTGGTTCGCCCT < 41bp 0.802210072635784 0.50244722127849 0.84584785 0.36350268 prediction 0.599525702714589 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29281510 chr17:29281514 stopgain 1.000 1 25 hm5C_associated_SNPs_54618 0 0 1 0 3 ADAP2 chr17:29281573 5'GT 29281573 Upstream 60bp
chr6 142468515 142468515 1 + G T UCEC 142468512 + 142468492 142468532 41 CGGCTCAGGAGCATGACAAGCGAGACCCTGTGGTGGCTTAT CGGCTCAGGAGCATGACAAGCGATACCCTGTGGTGGCTTAT < 41bp 0.866275720767497 0.56652575641983 0.71510446 0.23426023 prediction 0.599499928695334 Functional Loss - VTA1 ENSG00000009844 CDS Human protein_coding chr6:142468512 chr6:142468515 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54620 0 0 1 0 1 VTA1 chr6:142468536 5'GT 142468536 Upstream 22bp
chr3 40553959 40553959 1 + A C COAD 40553955 + 40553935 40553975 41 AAGGGGAACTGCCATGGGGCCTCGATCCCTGGGAACCTATG AAGGGGAACTGCCATGGGGCCTCGCTCCCTGGGAACCTATG < 41bp 0.79974563557399 0.4071438420812 0.5840379 0.04823816 prediction 0.599491271147981 Functional Loss - ZNF620 ENSG00000177842 CDS Human protein_coding chr3:40553955 chr3:40553959 nonsynonymous SNV 0.642 0 25 hm5C_associated_SNPs_54621 0 0 1 0 2 ZNF620 chr3:40553893 3'AG 40553893 Downstream 67bp
chr3 40553959 40553959 1 + A C COAD 40553955 + 40553935 40553975 41 AAGGGGAACTGCCATGGGGCCTCGATCCCTGGGAACCTATG AAGGGGAACTGCCATGGGGCCTCGCTCCCTGGGAACCTATG < 41bp 0.79974563557399 0.4071438420812 0.5840379 0.04823816 prediction 0.599491271147981 Functional Loss - ZNF620 ENSG00000177842 CDS Human protein_coding chr3:40553955 chr3:40553959 nonsynonymous SNV 0.642 0 25 hm5C_associated_SNPs_54621 0 0 1 0 2 ZNF620 chr3:40554006 5'GT 40554006 Upstream 48bp
chr4 71824723 71824723 1 + A C OV 71824719 + 71824699 71824739 41 TCGGATGGCTGTCATGCTTCCTGAAGGGGAAGATCTCAATG TCGGATGGCTGTCATGCTTCCTGACGGGGAAGATCTCAATG < 41bp 0.799744038100149 0.405624780266145 0.24685448 0.10486156 prediction 0.599488076200298 Functional Loss - MOB1B ENSG00000173542 CDS Human protein_coding chr4:71824719 chr4:71824723 nonsynonymous SNV 0.991 1 25 hm5C_associated_SNPs_54622 0 0 1 0 1 MOB1B chr4:71824757 5'GT 71824757 Upstream 35bp
chr15 45554276 45554276 1 + G T LUAD 45554273 + 45554253 45554293 41 AAAACACACGCCAGCTTGTTCAAGAAGATCCTGTTGGGCCT AAAACACACGCCAGCTTGTTCAATAAGATCCTGTTGGGCCT < 41bp 0.799728945323351 0.420564495546883 0.21135747 0.062036455 prediction 0.599457890646702 Functional Loss - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45554273 chr15:45554276 nonsynonymous SNV 0.963 2 24 hm5C_associated_SNPs_54625 0 0 0 0 2 SLC28A2 chr15:45554213 3'AG 45554213 Downstream 64bp
chr15 45554276 45554276 1 + G T LUAD 45554273 + 45554253 45554293 41 AAAACACACGCCAGCTTGTTCAAGAAGATCCTGTTGGGCCT AAAACACACGCCAGCTTGTTCAATAAGATCCTGTTGGGCCT < 41bp 0.799728945323351 0.420564495546883 0.21135747 0.062036455 prediction 0.599457890646702 Functional Loss - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45554273 chr15:45554276 nonsynonymous SNV 0.963 2 24 hm5C_associated_SNPs_54625 0 0 0 0 2 SLC28A2 chr15:45554304 5'GT 45554304 Upstream 29bp
chr14 58727727 58727727 1 + G T UCEC 58727725 + 58727705 58727745 41 ACTCTACATGATTGACCCATCAGGTGTTTCATACGTGAGTA ACTCTACATGATTGACCCATCATGTGTTTCATACGTGAGTA < 41bp 0.820346100192781 0.520621270429172 0.8242067 0.23797518 prediction 0.599449659527219 Functional Loss - PSMA3 ENSG00000100567 CDS Human protein_coding chr14:58727725 chr14:58727727 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_54627 0 0 1 0 3 PSMA3 chr14:58727666 3'AG 58727666 Downstream 62bp
chr14 58727727 58727727 1 + G T UCEC 58727725 + 58727705 58727745 41 ACTCTACATGATTGACCCATCAGGTGTTTCATACGTGAGTA ACTCTACATGATTGACCCATCATGTGTTTCATACGTGAGTA < 41bp 0.820346100192781 0.520621270429172 0.8242067 0.23797518 prediction 0.599449659527219 Functional Loss - PSMA3 ENSG00000100567 CDS Human protein_coding chr14:58727725 chr14:58727727 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_54627 0 0 1 0 3 PSMA3 chr14:58727687 3'AG 58727687 Downstream 41bp
chr14 58727727 58727727 1 + G T UCEC 58727725 + 58727705 58727745 41 ACTCTACATGATTGACCCATCAGGTGTTTCATACGTGAGTA ACTCTACATGATTGACCCATCATGTGTTTCATACGTGAGTA < 41bp 0.820346100192781 0.520621270429172 0.8242067 0.23797518 prediction 0.599449659527219 Functional Loss - PSMA3 ENSG00000100567 CDS Human protein_coding chr14:58727725 chr14:58727727 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_54627 0 0 1 0 3 PSMA3 chr14:58727738 5'GT 58727738 Upstream 12bp
chr10 60936680 60936680 1 + A C UCEC 60936676 + 60936656 60936696 41 AGCCCCTGTGAGGAGGTGATCAAAAACCTCAGCCTGGAGGC AGCCCCTGTGAGGAGGTGATCAAACACCTCAGCCTGGAGGC < 41bp 0.808768335529085 0.50904362672833 0.8949034 0.90659684 prediction 0.599449417601509 Functional Loss - PHYHIPL ENSG00000165443 CDS Human protein_coding chr10:60936676 chr10:60936680 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_54628 0 0 0 0 1 PHYHIPL chr10:60936719 5'GT 60936719 Upstream 40bp
chr1 160390848 160390848 1 + G T UCEC 160390846 + 160390826 160390866 41 TCCTGTTCCTGTGCAGAAAACAGCACCAACAACTCCACTGG TCCTGTTCCTGTGCAGAAAACATCACCAACAACTCCACTGG < 41bp 0.799709148527159 0.461865954821138 0.12242666 0.04785338 prediction 0.599418297054318 Functional Loss - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160390846 chr1:160390848 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_54630 0 0 0 0 1 VANGL2 chr1:160390842 3'AG 160390842 Downstream 7bp
chr8 2071206 2071206 1 + G T UCEC 2071203 + 2071183 2071223 41 AAACGGAGACACTGCCTAACCTGGAGAGGGGAATCTGTGAG AAACGGAGACACTGCCTAACCTGTAGAGGGGAATCTGTGAG < 41bp 0.873417406525351 0.573734831721423 0.070091605 0.030874759 prediction 0.599365149607857 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2071203 chr8:2071206 stopgain 0.226 0 24 hm5C_associated_SNPs_54632 0 0 0 0 2 MYOM2 chr8:2071125 3'AG 2071125 Downstream 82bp
chr8 2071206 2071206 1 + G T UCEC 2071203 + 2071183 2071223 41 AAACGGAGACACTGCCTAACCTGGAGAGGGGAATCTGTGAG AAACGGAGACACTGCCTAACCTGTAGAGGGGAATCTGTGAG < 41bp 0.873417406525351 0.573734831721423 0.070091605 0.030874759 prediction 0.599365149607857 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2071203 chr8:2071206 stopgain 0.226 0 24 hm5C_associated_SNPs_54632 0 0 0 0 2 MYOM2 chr8:2071238 5'GT 2071238 Upstream 33bp
chr11 111965589 111965589 1 + G T STAD 111965586 + 111965566 111965606 41 GATGCCTTGCAGAAAGCTGCCAAGGCAGGGCTTTTGGCACT GATGCCTTGCAGAAAGCTGCCAATGCAGGGCTTTTGGCACT < 41bp 0.873074119653059 0.573401655986708 0.36019617 0.10726681 prediction 0.599344927332701 Functional Loss - SDHD ENSG00000204370 CDS Human protein_coding chr11:111965586 chr11:111965589 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_54634 4 0 1 0 1 SDHD chr11:111965529 3'AG 111965529 Downstream 61bp
chr11 63990560 63990560 1 + A C LUAD 63990556 + 63990536 63990576 41 AAAGACGAGATCCTGGGCATCGCCAACAACCGACTGATCCG AAAGACGAGATCCTGGGCATCGCCCACAACCGACTGATCCG < 41bp 0.799667578248136 0.387231247146119 0.89708376 0.3497402 prediction 0.599335156496273 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63990556 chr11:63990560 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_54635 0 0 0 0 1 FERMT3 chr11:63990520 3'AG 63990520 Downstream 41bp
chr2 220147594 220147594 1 + G T LUAD 220147591 + 220147571 220147611 41 CCTTCTCAGAGCTTCAGAACCGGGGTTCCCGACACTCAGGC CCTTCTCAGAGCTTCAGAACCGGTGTTCCCGACACTCAGGC < 41bp 0.900140093956358 0.600477092366925 0.9648786 0.95051897 prediction 0.599326003178865 Functional Loss - DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220147591 chr2:220147594 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_54637 0 0 0 0 2 DNAJB2 chr2:220147559 3'AG 220147559 Downstream 36bp
chr2 220147594 220147594 1 + G T LUAD 220147591 + 220147571 220147611 41 CCTTCTCAGAGCTTCAGAACCGGGGTTCCCGACACTCAGGC CCTTCTCAGAGCTTCAGAACCGGTGTTCCCGACACTCAGGC < 41bp 0.900140093956358 0.600477092366925 0.9648786 0.95051897 prediction 0.599326003178865 Functional Loss - DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220147591 chr2:220147594 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_54637 0 0 0 0 2 DNAJB2 chr2:220147651 5'GT 220147651 Upstream 58bp
chr14 94567102 94567102 1 + G T SARC 94567100 + 94567080 94567120 41 TCCAGGCAGGGCTGCTGTAGCAGCTGTGGTCGGAGGAGGTG TCCAGGCAGGGCTGCTGTAGCATCTGTGGTCGGAGGAGGTG < 41bp 0.79965743053034 0.475122260827185 0.5869472 0.19153184 prediction 0.599314861060681 Functional Loss - IFI27L1 ENSG00000165948 CDS Human protein_coding chr14:94567100 chr14:94567102 nonsynonymous SNV 0.008 2 23 hm5C_associated_SNPs_54639 0 0 1 0 2 IFI27L1 chr14:94567085 3'AG 94567085 Downstream 18bp
chr14 94567102 94567102 1 + G T SARC 94567100 + 94567080 94567120 41 TCCAGGCAGGGCTGCTGTAGCAGCTGTGGTCGGAGGAGGTG TCCAGGCAGGGCTGCTGTAGCATCTGTGGTCGGAGGAGGTG < 41bp 0.79965743053034 0.475122260827185 0.5869472 0.19153184 prediction 0.599314861060681 Functional Loss - IFI27L1 ENSG00000165948 CDS Human protein_coding chr14:94567100 chr14:94567102 nonsynonymous SNV 0.008 2 23 hm5C_associated_SNPs_54639 0 0 1 0 2 IFI27L1 chr14:94567117 5'GT 94567117 Upstream 16bp
chr2 10559926 10559926 1 + G T HNSC 10559923 + 10559903 10559943 41 AGCTGCGGCCCGAGGTGCTGCAGGACCTGCGGGAGAACACG AGCTGCGGCCCGAGGTGCTGCAGTACCTGCGGGAGAACACG < 41bp 0.799647793752152 0.426957562173753 0.8667066 0.3620363 prediction 0.599295587504303 Functional Loss - HPCAL1 ENSG00000115756 CDS Human protein_coding chr2:10559923 chr2:10559926 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54641 0 0 0 0 1 HPCAL1 chr2:10559860 3'AG 10559860 Downstream 67bp
chr15 28632821 28632821 1 + G T CESC 28632819 + 28632799 28632839 41 TTCCTAGCATCCCACAGGACCTGGAGAGCAGGGAGGCCATG TTCCTAGCATCCCACAGGACCTTGAGAGCAGGGAGGCCATG < 41bp 0.829942158922206 0.530319226823178 0.53172255 0.13324589 prediction 0.599245864198057 Functional Loss - GOLGA8F;GOLGA8G ENSG00000153684 CDS Human protein_coding chr15:28632819 chr15:28632821 synonymous SNV . 0 23 hm5C_associated_SNPs_54645 0 0 0 0 1 GOLGA8F;GOLGA8G chr15:28632748 3'AG 28632748 Downstream 74bp
chr4 20482397 20482397 1 + G T HNSC 20482394 + 20482374 20482414 41 ATGGGGCATTCAGGGCTCTCCGGGACCTGGAAGTGCTGTAA ATGGGGCATTCAGGGCTCTCCGGTACCTGGAAGTGCTGTAA < 41bp 0.799599877720745 0.451442910207108 0.906099 0.43402815 prediction 0.59919975544149 Functional Loss - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20482394 chr4:20482397 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_54647 0 0 1 0 2 SLIT2 chr4:20482339 3'AG 20482339 Downstream 59bp
chr4 20482397 20482397 1 + G T HNSC 20482394 + 20482374 20482414 41 ATGGGGCATTCAGGGCTCTCCGGGACCTGGAAGTGCTGTAA ATGGGGCATTCAGGGCTCTCCGGTACCTGGAAGTGCTGTAA < 41bp 0.799599877720745 0.451442910207108 0.906099 0.43402815 prediction 0.59919975544149 Functional Loss - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20482394 chr4:20482397 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_54647 0 0 1 0 2 SLIT2 chr4:20482410 5'GT 20482410 Upstream 14bp
chr17 18923500 18923500 1 + G T SARC 18923498 + 18923478 18923518 41 TTACCTGGTGGACCCTGGCTCAGGATGTGCCCTTGGGAACT TTACCTGGTGGACCCTGGCTCATGATGTGCCCTTGGGAACT < 41bp 0.834475511259296 0.534879934328261 0.9257749 0.6134572 prediction 0.599191153862071 Functional Loss - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18923498 chr17:18923500 nonsynonymous SNV 0.074 1 23 hm5C_associated_SNPs_54649 0 0 0 0 2 SLC5A10 chr17:18923468 3'AG 18923468 Downstream 33bp
chr17 18923500 18923500 1 + G T SARC 18923498 + 18923478 18923518 41 TTACCTGGTGGACCCTGGCTCAGGATGTGCCCTTGGGAACT TTACCTGGTGGACCCTGGCTCATGATGTGCCCTTGGGAACT < 41bp 0.834475511259296 0.534879934328261 0.9257749 0.6134572 prediction 0.599191153862071 Functional Loss - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18923498 chr17:18923500 nonsynonymous SNV 0.074 1 23 hm5C_associated_SNPs_54649 0 0 0 0 2 SLC5A10 chr17:18923525 5'GT 18923525 Upstream 26bp
chr7 92158152 92158152 1 + G T LUAD 92158149 + 92158129 92158169 41 TGGCGTCGAGCGGCGGGGAGCTAGGGAGTTTATTTGATCAC TGGCGTCGAGCGGCGGGGAGCTATGGAGTTTATTTGATCAC < 41bp 0.87058898529478 0.570996858464165 0.7815817 0.3166803 prediction 0.599184253661229 Functional Loss - RBM48 ENSG00000127993 CDS Human protein_coding chr7:92158149 chr7:92158152 nonsynonymous SNV 0.005 4 24 hm5C_associated_SNPs_54650 0 0 0 0 1 RBM48 chr7:92158238 5'GT 92158238 Upstream 87bp
chr17 21092067 21092067 1 + G T LAML 21092065 + 21092045 21092085 41 CCCAGGCTTTCTTTGACTGTCTGCGTGCCGAGATGGAACAG CCCAGGCTTTCTTTGACTGTCTTCGTGCCGAGATGGAACAG < 41bp 0.831197894750844 0.53161134374062 0.101139575 0.062047243 prediction 0.599173102020447 Functional Loss - DHRS7B ENSG00000109016 CDS Human protein_coding chr17:21092065 chr17:21092067 synonymous SNV . 0 23 hm5C_associated_SNPs_54651 0 0 1 0 1 DHRS7B chr17:21092024 3'AG 21092024 Downstream 44bp
chr9 93637067 93637067 1 + G T LUAD 93637064 + 93637044 93637084 41 TGGACCGAAAGCTGCTGACGCTGGAAGACAAAGAACTGGGC TGGACCGAAAGCTGCTGACGCTGTAAGACAAAGAACTGGGC < 41bp 0.799558215744448 0.429464729156587 0.29157847 0.19968921 prediction 0.599116431488896 Functional Loss - SYK ENSG00000165025 CDS Human protein_coding chr9:93637064 chr9:93637067 stopgain 0.987 1 24 hm5C_associated_SNPs_54657 0 0 0 0 1 SYK chr9:93637131 5'GT 93637131 Upstream 65bp
chr1 156594403 156594403 1 + G T STAD 156594400 + 156594380 156594420 41 CGTCTCCCGCCAGCTTGGACCGAGGGTCTGGACTGGTGTAA CGTCTCCCGCCAGCTTGGACCGATGGTCTGGACTGGTGTAA < 41bp 0.889294176703716 0.589759818708438 0.9167317 0.44459718 prediction 0.599068715990557 Functional Loss - HAPLN2 ENSG00000132702 CDS Human protein_coding chr1:156594400 chr1:156594403 nonsynonymous SNV 0.750 1 24 hm5C_associated_SNPs_54659 0 0 1 0 1 HAPLN2 chr1:156594393 3'AG 156594393 Downstream 11bp
chr3 100447675 100447675 1 + G T PAAD 100447673 + 100447653 100447693 41 CTTGGAACCACCTGGAGAACCAGGACCTTCCACCAATATTC CTTGGAACCACCTGGAGAACCATGACCTTCCACCAATATTC < 41bp 0.805916142433511 0.50638249554741 0.4423595 0.069670856 prediction 0.599067293772203 Functional Loss - TFG ENSG00000114354 CDS Human protein_coding chr3:100447673 chr3:100447675 stopgain 0.993 1 23 hm5C_associated_SNPs_54660 0 0 1 0 1 TFG chr3:100447702 5'GT 100447702 Upstream 28bp
chr19 7589924 7589924 1 + G T UCEC 7589922 + 7589902 7589942 41 ACCGGCCCCTCCGACACCCCCAGAAGAGGAAGACCTTCGCC ACCGGCCCCTCCGACACCCCCATAAGAGGAAGACCTTCGCC < 41bp 0.819156759421247 0.519638187873961 0.9115962 0.6034919 prediction 0.599037143094572 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7589922 chr19:7589924 stopgain 0.918 1 23 hm5C_associated_SNPs_54661 0 0 1 0 1 MCOLN1 chr19:7589847 3'AG 7589847 Downstream 78bp
chr3 49011195 49011195 1 + G T COAD 49011192 + 49011172 49011212 41 GCCACAATCCGGAAATGGCTCACGAAGTGTGCAGACGACTC GCCACAATCCGGAAATGGCTCACTAAGTGTGCAGACGACTC < 41bp 0.879047926432618 0.579532706114968 0.3068748 0.1616016 prediction 0.599030440635299 Functional Loss - ARIH2 ENSG00000177479 CDS Human protein_coding chr3:49011192 chr3:49011195 synonymous SNV . 0 24 hm5C_associated_SNPs_54662 0 0 1 0 2 ARIH2 chr3:49011132 3'AG 49011132 Downstream 64bp
chr3 49011195 49011195 1 + G T COAD 49011192 + 49011172 49011212 41 GCCACAATCCGGAAATGGCTCACGAAGTGTGCAGACGACTC GCCACAATCCGGAAATGGCTCACTAAGTGTGCAGACGACTC < 41bp 0.879047926432618 0.579532706114968 0.3068748 0.1616016 prediction 0.599030440635299 Functional Loss - ARIH2 ENSG00000177479 CDS Human protein_coding chr3:49011192 chr3:49011195 synonymous SNV . 0 24 hm5C_associated_SNPs_54662 0 0 1 0 2 ARIH2 chr3:49011249 5'GT 49011249 Upstream 55bp
chr1 160167377 160167377 1 + G T BLCA 160167375 + 160167355 160167395 41 CTAGATCAACCCTGAGGAAACTGAAGCCGGAGAGTATGTAT CTAGATCAACCCTGAGGAAACTTAAGCCGGAGAGTATGTAT < 41bp 0.799515044064648 0.488425844117791 0.3378675 0.17481911 prediction 0.599030088129297 Functional Loss - CASQ1 ENSG00000143318 CDS Human protein_coding chr1:160167375 chr1:160167377 synonymous SNV . 0 23 hm5C_associated_SNPs_54663 0 0 0 0 2 CASQ1 chr1:160167359 3'AG 160167359 Downstream 19bp
chr1 160167377 160167377 1 + G T BLCA 160167375 + 160167355 160167395 41 CTAGATCAACCCTGAGGAAACTGAAGCCGGAGAGTATGTAT CTAGATCAACCCTGAGGAAACTTAAGCCGGAGAGTATGTAT < 41bp 0.799515044064648 0.488425844117791 0.3378675 0.17481911 prediction 0.599030088129297 Functional Loss - CASQ1 ENSG00000143318 CDS Human protein_coding chr1:160167375 chr1:160167377 synonymous SNV . 0 23 hm5C_associated_SNPs_54663 0 0 0 0 2 CASQ1 chr1:160167404 5'GT 160167404 Upstream 28bp
chr12 8289404 8289404 1 + G T SARC 8289402 + 8289382 8289422 41 AGGATTTCATCTTCCAGAATCTGCAAGAAGAATCTGCTTAT AGGATTTCATCTTCCAGAATCTTCAAGAAGAATCTGCTTAT < 41bp 0.805241366754931 0.505734580022265 0.05683893 0.062381506 prediction 0.599013573465331 Functional Loss - CLEC4A ENSG00000111729 CDS Human protein_coding chr12:8289402 chr12:8289404 nonsynonymous SNV 0.032 0 23 hm5C_associated_SNPs_54664 0 0 0 0 2 CLEC4A chr12:8289384 3'AG 8289384 Downstream 21bp
chr12 8289404 8289404 1 + G T SARC 8289402 + 8289382 8289422 41 AGGATTTCATCTTCCAGAATCTGCAAGAAGAATCTGCTTAT AGGATTTCATCTTCCAGAATCTTCAAGAAGAATCTGCTTAT < 41bp 0.805241366754931 0.505734580022265 0.05683893 0.062381506 prediction 0.599013573465331 Functional Loss - CLEC4A ENSG00000111729 CDS Human protein_coding chr12:8289402 chr12:8289404 nonsynonymous SNV 0.032 0 23 hm5C_associated_SNPs_54664 0 0 0 0 2 CLEC4A chr12:8289499 5'GT 8289499 Upstream 96bp
chrX 50090687 50090687 1 + G T UCEC 50090685 + 50090665 50090705 41 ACATCTGCGAGATGACCCTGCAGGAATACCACTATGTCCAG ACATCTGCGAGATGACCCTGCATGAATACCACTATGTCCAG < 41bp 0.849790840955638 0.550296656372572 0.35879198 0.16238195 prediction 0.598988369166132 Functional Loss - CCNB3 ENSG00000147082 CDS Human protein_coding chrX:50090685 chrX:50090687 nonsynonymous SNV 0.572 0 23 hm5C_associated_SNPs_54665 0 0 0 0 1 CCNB3 chrX:50090774 5'GT 50090774 Upstream 88bp
chr16 67034869 67034869 1 + G T UCEC 67034867 + 67034847 67034887 41 GTGCTGGTGTTTCTGCAGCACAGGCTCGGCATCTTCGGCTT GTGCTGGTGTTTCTGCAGCACATGCTCGGCATCTTCGGCTT < 41bp 0.799493262844464 0.462376505649297 0.20834485 0.069196135 prediction 0.598986525688927 Functional Loss - CES4A ENSG00000172824 CDS Human protein_coding chr16:67034867 chr16:67034869 nonsynonymous SNV 0.021 4 23 hm5C_associated_SNPs_54666 0 0 0 0 3 CES4A chr16:67034893 5'GT 67034893 Upstream 25bp
chr16 67034869 67034869 1 + G T UCEC 67034867 + 67034847 67034887 41 GTGCTGGTGTTTCTGCAGCACAGGCTCGGCATCTTCGGCTT GTGCTGGTGTTTCTGCAGCACATGCTCGGCATCTTCGGCTT < 41bp 0.799493262844464 0.462376505649297 0.20834485 0.069196135 prediction 0.598986525688927 Functional Loss - CES4A ENSG00000172824 CDS Human protein_coding chr16:67034867 chr16:67034869 nonsynonymous SNV 0.021 4 23 hm5C_associated_SNPs_54666 0 0 0 0 3 CES4A chr16:67034905 5'GT 67034905 Upstream 37bp
chr16 67034869 67034869 1 + G T UCEC 67034867 + 67034847 67034887 41 GTGCTGGTGTTTCTGCAGCACAGGCTCGGCATCTTCGGCTT GTGCTGGTGTTTCTGCAGCACATGCTCGGCATCTTCGGCTT < 41bp 0.799493262844464 0.462376505649297 0.20834485 0.069196135 prediction 0.598986525688927 Functional Loss - CES4A ENSG00000172824 CDS Human protein_coding chr16:67034867 chr16:67034869 nonsynonymous SNV 0.021 4 23 hm5C_associated_SNPs_54666 0 0 0 0 3 CES4A chr16:67034949 5'GT 67034949 Upstream 81bp
chr2 111691148 111691148 1 + G T LUAD 111691146 + 111691126 111691166 41 CTCGCTGCAGGCTCTGGTGGCGGGGCTGAAGGCCTACAGCA CTCGCTGCAGGCTCTGGTGGCGTGGCTGAAGGCCTACAGCA < 41bp 0.845245595368085 0.545782148644269 0.9136977 0.7607496 prediction 0.598926893447632 Functional Loss - ACOXL ENSG00000153093 CDS Human protein_coding chr2:111691146 chr2:111691148 nonsynonymous SNV 0.618 5 23 hm5C_associated_SNPs_54669 0 0 0 0 2 ACOXL chr2:111691066 3'AG 111691066 Downstream 83bp
chr2 111691148 111691148 1 + G T LUAD 111691146 + 111691126 111691166 41 CTCGCTGCAGGCTCTGGTGGCGGGGCTGAAGGCCTACAGCA CTCGCTGCAGGCTCTGGTGGCGTGGCTGAAGGCCTACAGCA < 41bp 0.845245595368085 0.545782148644269 0.9136977 0.7607496 prediction 0.598926893447632 Functional Loss - ACOXL ENSG00000153093 CDS Human protein_coding chr2:111691146 chr2:111691148 nonsynonymous SNV 0.618 5 23 hm5C_associated_SNPs_54669 0 0 0 0 2 ACOXL chr2:111691219 5'GT 111691219 Upstream 72bp
chr8 43147866 43147866 1 + G T LUAD 43147863 + 43147843 43147883 41 TGCCTGGTGGGGTGAAGTCCCCAGAGCGGATCTCATCGTCA TGCCTGGTGGGGTGAAGTCCCCATAGCGGATCTCATCGTCA < 41bp 0.799444704639083 0.459395903918341 0.44336143 0.15579107 prediction 0.598889409278166 Functional Loss - POTEA ENSG00000188877 ncRNA_exonic Human polymorphic_pseudogene chr8:43147863 chr8:43147866 . . 0 24 hm5C_associated_SNPs_54672 0 0 0 0 1 POTEA chr8:43147926 5'GT 43147926 Upstream 61bp
chr1 228333299 228333299 1 + G T SARC 228333297 + 228333277 228333317 41 AAGAGGCTGCTCCAGGAGCACAGCGGCATCTTTGGCTTCAG AAGAGGCTGCTCCAGGAGCACATCGGCATCTTTGGCTTCAG < 41bp 0.799425732130895 0.479322849594535 0.7603074 0.36321288 prediction 0.59885146426179 Functional Loss - GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333297 chr1:228333299 nonsynonymous SNV 0.741 1 23 hm5C_associated_SNPs_54674 0 0 1 0 2 GUK1 chr1:228333212 3'AG 228333212 Downstream 88bp
chr1 228333299 228333299 1 + G T SARC 228333297 + 228333277 228333317 41 AAGAGGCTGCTCCAGGAGCACAGCGGCATCTTTGGCTTCAG AAGAGGCTGCTCCAGGAGCACATCGGCATCTTTGGCTTCAG < 41bp 0.799425732130895 0.479322849594535 0.7603074 0.36321288 prediction 0.59885146426179 Functional Loss - GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333297 chr1:228333299 nonsynonymous SNV 0.741 1 23 hm5C_associated_SNPs_54674 0 0 1 0 2 GUK1 chr1:228333325 5'GT 228333325 Upstream 27bp
chr18 72226648 72226648 1 + G T BLCA 72226646 + 72226626 72226666 41 CTTCAGAATGATGGCCGTGGCTGCGGACACGCTGCAGCGCC CTTCAGAATGATGGCCGTGGCTTCGGACACGCTGCAGCGCC < 41bp 0.846605732267195 0.547240338385127 0.47518596 0.16590306 prediction 0.598730787764136 Functional Loss - CNDP1 ENSG00000150656 CDS Human protein_coding chr18:72226646 chr18:72226648 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_54676 0 0 0 0 2 CNDP1 chr18:72226558 3'AG 72226558 Downstream 91bp
chr18 72226648 72226648 1 + G T BLCA 72226646 + 72226626 72226666 41 CTTCAGAATGATGGCCGTGGCTGCGGACACGCTGCAGCGCC CTTCAGAATGATGGCCGTGGCTTCGGACACGCTGCAGCGCC < 41bp 0.846605732267195 0.547240338385127 0.47518596 0.16590306 prediction 0.598730787764136 Functional Loss - CNDP1 ENSG00000150656 CDS Human protein_coding chr18:72226646 chr18:72226648 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_54676 0 0 0 0 2 CNDP1 chr18:72226707 5'GT 72226707 Upstream 60bp
chr9 34249823 34249823 1 + G T LUAD 34249821 + 34249801 34249841 41 TCACAAGTGCCCAACATGCCCAGCTGTCCCCAGGCCTATTC TCACAAGTGCCCAACATGCCCATCTGTCCCCAGGCCTATTC < 41bp 0.838321222222904 0.538956009417409 0.2698202 0.02169168 prediction 0.598730425610988 Functional Loss - UBAP1 ENSG00000165006 CDS Human protein_coding chr9:34249821 chr9:34249823 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_54677 0 0 1 0 1 UBAP1 chr9:34249777 3'AG 34249777 Downstream 47bp
chr15 32976825 32976825 1 + G T LUAD 32976823 + 32976803 32976843 41 GTCGAGAGTTCCAGTTGCACCAGCATCTCTTTGATCCGGAA GTCGAGAGTTCCAGTTGCACCATCATCTCTTTGATCCGGAA < 41bp 0.799361658538973 0.488880533321219 0.15324175 0.087711155 prediction 0.598723317077945 Functional Loss - SCG5 ENSG00000166922 CDS Human protein_coding chr15:32976823 chr15:32976825 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_54678 0 0 1 0 3 SCG5 chr15:32976758 3'AG 32976758 Downstream 68bp
chr15 32976825 32976825 1 + G T LUAD 32976823 + 32976803 32976843 41 GTCGAGAGTTCCAGTTGCACCAGCATCTCTTTGATCCGGAA GTCGAGAGTTCCAGTTGCACCATCATCTCTTTGATCCGGAA < 41bp 0.799361658538973 0.488880533321219 0.15324175 0.087711155 prediction 0.598723317077945 Functional Loss - SCG5 ENSG00000166922 CDS Human protein_coding chr15:32976823 chr15:32976825 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_54678 0 0 1 0 3 SCG5 chr15:32976761 3'AG 32976761 Downstream 65bp
chr15 32976825 32976825 1 + G T LUAD 32976823 + 32976803 32976843 41 GTCGAGAGTTCCAGTTGCACCAGCATCTCTTTGATCCGGAA GTCGAGAGTTCCAGTTGCACCATCATCTCTTTGATCCGGAA < 41bp 0.799361658538973 0.488880533321219 0.15324175 0.087711155 prediction 0.598723317077945 Functional Loss - SCG5 ENSG00000166922 CDS Human protein_coding chr15:32976823 chr15:32976825 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_54678 0 0 1 0 3 SCG5 chr15:32976870 5'GT 32976870 Upstream 46bp
chr1 13036288 13036288 1 + A C BLCA 13036284 + 13036264 13036304 41 GAATTTTTGGACCATATGGTCTGGAGCCAGGCCCCTGTCCT GAATTTTTGGACCATATGGTCTGGCGCCAGGCCCCTGTCCT < 41bp 0.89361043602986 0.594264926823566 0.6794512 0.84900963 prediction 0.598691018412587 Functional Loss - PRAMEF18;PRAMEF22 ENSG00000204508 CDS Human other chr1:13036284 chr1:13036288 synonymous SNV . 0 25 hm5C_associated_SNPs_54681 0 0 0 0 1 PRAMEF18;PRAMEF22 chr1:13036222 3'AG 13036222 Downstream 67bp
chr10 71647223 71647223 1 + A C rs11816811 71647219 + 71647199 71647239 41 TTTTTTTTTTCAGGGTCAACCAGGAACTAGAGGTTTCCCTG TTTTTTTTTTCAGGGTCAACCAGGCACTAGAGGTTTCCCTG < 41bp 0.799342803937011 0.439387023075536 0.94694275 0.9346131 prediction 0.598685607874023 Functional Loss - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71647219 chr10:71647223 synonymous SNV . 0 25 hm5C_associated_SNPs_54682 0 0 0 0 1 COL13A1 chr10:71647247 5'GT 71647247 Upstream 25bp
chr12 1895188 1895188 1 + G T LAML 1895185 + 1895165 1895205 41 TCCATGGTGTCTCAAACCTCCAGGAGTTTCGTTTCATGATC TCCATGGTGTCTCAAACCTCCAGTAGTTTCGTTTCATGATC < 41bp 0.86992246382096 0.570589354945393 0.75642306 0.06149164 prediction 0.598666217751133 Functional Loss - ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1895185 chr12:1895188 stopgain 0.999 1 24 hm5C_associated_SNPs_54683 0 0 1 0 1 ADIPOR2 chr12:1895110 3'AG 1895110 Downstream 79bp
chr21 45937638 45937638 1 + A C rs202122569 45937634 + 45937614 45937654 41 CTGTGGACATCACTCGCCTTCAGAACACTGAGCCCTCCTAC CTGTGGACATCACTCGCCTTCAGACCACTGAGCCCTCCTAC < 41bp 0.799332792037325 0.449290487528513 0.6848522 0.40454453 prediction 0.59866558407465 Functional Loss - TSPEAR-AS2 ENSG00000182912 UTR5 Human antisense chr21:45937634 chr21:45937638 . . 0 25 hm5C_associated_SNPs_54684 0 0 1 9 1 TSPEAR-AS2 chr21:45937718 5'GT 45937718 Upstream 81bp
chr22 47433094 47433094 1 + G T STAD 47433092 + 47433072 47433112 41 TCCGCCTGTGGGACACCTACCAGGTGAGCTCTCCTTCGCAC TCCGCCTGTGGGACACCTACCATGTGAGCTCTCCTTCGCAC < 41bp 0.79931998663057 0.478832564895605 0.9321998 0.3622275 prediction 0.598639973261141 Functional Loss - TBC1D22A ENSG00000054611 CDS Human protein_coding chr22:47433092 chr22:47433094 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_54687 0 0 1 0 1 TBC1D22A chr22:47433094 5'GT 47433094 Upstream 1bp
chr12 120111862 120111862 1 + G T READ 120111859 + 120111839 120111879 41 CAGTGGACGCACGACCCTTCCGAGGTACTCTTCCTCCCACC CAGTGGACGCACGACCCTTCCGATGTACTCTTCCTCCCACC < 41bp 0.893434490843251 0.594117896991182 0.9001726 0.34815508 prediction 0.598633187704139 Functional Loss - PRKAB1 ENSG00000111725 CDS Human protein_coding chr12:120111859 chr12:120111862 nonsynonymous SNV 0.984 1 24 hm5C_associated_SNPs_54688 0 0 1 0 2 PRKAB1 chr12:120111769 3'AG 120111769 Downstream 94bp
chr12 120111862 120111862 1 + G T READ 120111859 + 120111839 120111879 41 CAGTGGACGCACGACCCTTCCGAGGTACTCTTCCTCCCACC CAGTGGACGCACGACCCTTCCGATGTACTCTTCCTCCCACC < 41bp 0.893434490843251 0.594117896991182 0.9001726 0.34815508 prediction 0.598633187704139 Functional Loss - PRKAB1 ENSG00000111725 CDS Human protein_coding chr12:120111859 chr12:120111862 nonsynonymous SNV 0.984 1 24 hm5C_associated_SNPs_54688 0 0 1 0 2 PRKAB1 chr12:120111862 5'GT 120111862 Upstream 1bp
chr10 70987019 70987019 1 + G T COAD 70987016 + 70986996 70987036 41 GATGACACCCTTTTGGACATCATGAGGCGGTTCCGGGCTGA GATGACACCCTTTTGGACATCATTAGGCGGTTCCGGGCTGA < 41bp 0.799313309744652 0.415513437568377 0.32490447 0.3434939 prediction 0.598626619489305 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:70987016 chr10:70987019 nonsynonymous SNV 0.808 2 24 hm5C_associated_SNPs_54689 0 0 0 0 1 HKDC1 chr10:70986963 3'AG 70986963 Downstream 57bp
chr2 44531320 44531320 1 + G T UCEC 44531318 + 44531298 44531338 41 GCCTATGCAGAGAGTATTGACAGGACCGTGATGTACTATGG GCCTATGCAGAGAGTATTGACATGACCGTGATGTACTATGG < 41bp 0.814454640475317 0.515143206337144 0.38608223 0.09639767 prediction 0.598622868276345 Functional Loss - SLC3A1 ENSG00000138079 CDS Human protein_coding chr2:44531318 chr2:44531320 nonsynonymous SNV 0.980 2 23 hm5C_associated_SNPs_54690 0 0 0 0 1 SLC3A1 chr2:44531282 3'AG 44531282 Downstream 39bp
chr2 143986171 143986171 1 + G T UCEC 143986168 + 143986148 143986188 41 AGGAAAAACTGGTCTACTTCCTGGATTGTTCTTTCTAGTCG AGGAAAAACTGGTCTACTTCCTGTATTGTTCTTTCTAGTCG < 41bp 0.799308157269793 0.491817486800063 0.21517527 0.06220585 prediction 0.598616314539586 Functional Loss - ARHGAP15 ENSG00000075884 CDS Human protein_coding chr2:143986168 chr2:143986171 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54691 0 0 0 0 2 ARHGAP15 chr2:143986150 3'AG 143986150 Downstream 22bp
chr2 143986171 143986171 1 + G T UCEC 143986168 + 143986148 143986188 41 AGGAAAAACTGGTCTACTTCCTGGATTGTTCTTTCTAGTCG AGGAAAAACTGGTCTACTTCCTGTATTGTTCTTTCTAGTCG < 41bp 0.799308157269793 0.491817486800063 0.21517527 0.06220585 prediction 0.598616314539586 Functional Loss - ARHGAP15 ENSG00000075884 CDS Human protein_coding chr2:143986168 chr2:143986171 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54691 0 0 0 0 2 ARHGAP15 chr2:143986237 5'GT 143986237 Upstream 67bp
chr17 19480750 19480750 1 + G T STAD 19480747 + 19480727 19480767 41 AACCTTTGCCGGAACATCCACAGGACGGCGCTAAATTGTCC AACCTTTGCCGGAACATCCACAGTACGGCGCTAAATTGTCC < 41bp 0.799270476796352 0.432354993461472 0.26380494 0.097782016 prediction 0.598540953592705 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19480747 chr17:19480750 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_54694 0 0 0 0 1 SLC47A1 chr17:19480827 5'GT 19480827 Upstream 78bp
chr20 45700858 45700858 1 + G T rs533994822 45700856 + 45700836 45700876 41 TCTATCAAGGAGGAAATGGACTGGGCAACGCAGCCGGTTTC TCTATCAAGGAGGAAATGGACTTGGCAACGCAGCCGGTTTC < 41bp 0.799249259301901 0.471779638227693 0.90786135 0.8485395 prediction 0.598498518603801 Functional Loss - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45700856 chr20:45700858 synonymous SNV . 0 23 hm5C_associated_SNPs_54697 0 0 0 0 2 EYA2 chr20:45700824 3'AG 45700824 Downstream 35bp
chr20 45700858 45700858 1 + G T rs533994822 45700856 + 45700836 45700876 41 TCTATCAAGGAGGAAATGGACTGGGCAACGCAGCCGGTTTC TCTATCAAGGAGGAAATGGACTTGGCAACGCAGCCGGTTTC < 41bp 0.799249259301901 0.471779638227693 0.90786135 0.8485395 prediction 0.598498518603801 Functional Loss - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45700856 chr20:45700858 synonymous SNV . 0 23 hm5C_associated_SNPs_54697 0 0 0 0 2 EYA2 chr20:45700891 5'GT 45700891 Upstream 34bp
chr3 111432938 111432938 1 + G T LIHC 111432935 + 111432915 111432955 41 CCAGAGTGAAGACCATTGCCCGGGGCTTGGTTGGGGGCCTC CCAGAGTGAAGACCATTGCCCGGTGCTTGGTTGGGGGCCTC < 41bp 0.799241030489381 0.419753309212529 0.90866685 0.716609 prediction 0.598482060978761 Functional Loss - PLCXD2 ENSG00000240891 CDS Human protein_coding chr3:111432935 chr3:111432938 nonsynonymous SNV 0.992 3 24 hm5C_associated_SNPs_54699 0 0 0 0 1 PLCXD2 chr3:111432975 5'GT 111432975 Upstream 38bp
chr10 38645318 38645318 1 + A C rs564355864 38645314 + 38645294 38645334 41 TGGTGACGGGTGAGGCGGCCCGAAATCGTAGGACTTCCGAA TGGTGACGGGTGAGGCGGCCCGAACTCGTAGGACTTCCGAA < 41bp 0.799224622801317 0.446809664101463 0.08348858 0.07364398 prediction 0.598449245602633 Functional Loss - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38645314 chr10:38645318 . . 0 25 hm5C_associated_SNPs_54700 0 0 1 0 1 HSD17B7P2 chr10:38645417 5'GT 38645417 Upstream 100bp
chr4 60031 60031 1 + G T COAD 60029 + 60009 60049 41 CAATTTGAAGATACATGAGACAGCAGCCAAACCCCCAGGTA CAATTTGAAGATACATGAGACATCAGCCAAACCCCCAGGTA < 41bp 0.799213732100942 0.492991225789805 0.3799712 0.10829204 prediction 0.598427464201884 Functional Loss - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:60029 chr4:60031 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_54702 0 0 1 0 2 ZNF595;ZNF718 chr4:59951 3'AG 59951 Downstream 81bp
chr4 60031 60031 1 + G T COAD 60029 + 60009 60049 41 CAATTTGAAGATACATGAGACAGCAGCCAAACCCCCAGGTA CAATTTGAAGATACATGAGACATCAGCCAAACCCCCAGGTA < 41bp 0.799213732100942 0.492991225789805 0.3799712 0.10829204 prediction 0.598427464201884 Functional Loss - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:60029 chr4:60031 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_54702 0 0 1 0 2 ZNF595;ZNF718 chr4:60046 5'GT 60046 Upstream 16bp
chr17 21215491 21215491 1 + G T ACC 21215489 + 21215469 21215509 41 CTGCGGTTCCCTTACGAGTCCTGGGGGACCCCGTTCCAGCA CTGCGGTTCCCTTACGAGTCCTTGGGGACCCCGTTCCAGCA < 41bp 0.849421450266818 0.550261802885164 0.9055593 0.2758934 prediction 0.598319294763308 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21215489 chr17:21215491 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_54703 0 0 1 0 1 MAP2K3 chr17:21215454 3'AG 21215454 Downstream 38bp
chr2 85982004 85982004 1 + G T BLCA 85982002 + 85981982 85982022 41 ATCAAAGCCCTGCAGCAGACCCGGAGGCTCCTGGCGAACGC ATCAAAGCCCTGCAGCAGACCCTGAGGCTCCTGGCGAACGC < 41bp 0.799155615556318 0.470824405363415 0.86928815 0.24344864 prediction 0.598311231112636 Functional Loss - ATOH8 ENSG00000168874 CDS Human protein_coding chr2:85982002 chr2:85982004 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_54704 0 0 0 0 1 ATOH8 chr2:85982080 5'GT 85982080 Upstream 77bp
chr10 127434403 127434403 1 + G T LUAD 127434400 + 127434380 127434420 41 GCCGCCCTTTTATTATGTAACACGGGAAGGCTCATGCGGAT GCCGCCCTTTTATTATGTAACACTGGAAGGCTCATGCGGAT < 41bp 0.799153809104933 0.428636237896014 0.23002854 0.086226165 prediction 0.598307618209867 Functional Loss - EDRF1 ENSG00000107938 CDS Human protein_coding chr10:127434400 chr10:127434403 synonymous SNV . 0 24 hm5C_associated_SNPs_54705 0 0 1 0 1 EDRF1 chr10:127434499 5'GT 127434499 Upstream 97bp
chr19 49671653 49671653 1 + G T LUAD 49671650 + 49671630 49671670 41 GTGGCCCCCTGGGGTGTGGTCCGGAATAGAGACACCCTCAT GTGGCCCCCTGGGGTGTGGTCCGTAATAGAGACACCCTCAT < 41bp 0.799124537824958 0.421326065057142 0.6080502 0.09464002 prediction 0.598249075649915 Functional Loss - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49671650 chr19:49671653 stopgain . 0 24 hm5C_associated_SNPs_54710 0 0 0 0 1 TRPM4 chr19:49671680 5'GT 49671680 Upstream 28bp
chr10 112039713 112039713 1 + G T UCEC 112039710 + 112039690 112039730 41 AGAAAAAGCCAGCACCAGCTCGAGAATTTGGAACGAGAACA AGAAAAAGCCAGCACCAGCTCGATAATTTGGAACGAGAACA < 41bp 0.799102340146933 0.430803777320472 0.36912578 0.10363376 prediction 0.598204680293865 Functional Loss - MXI1 ENSG00000119950 CDS Human protein_coding chr10:112039710 chr10:112039713 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_54712 0 0 1 0 1 MXI1 chr10:112039672 3'AG 112039672 Downstream 42bp
chr1 84867636 84867636 1 + G T LUSC 84867634 + 84867614 84867654 41 AAACAAGGAAAGTGGAGAGACTGGGTTAGAGTACCTGTACC AAACAAGGAAAGTGGAGAGACTTGGTTAGAGTACCTGTACC < 41bp 0.819174625545976 0.520092999551766 0.2549504 0.21915182 prediction 0.598163251988421 Functional Loss - DNASE2B ENSG00000137976 CDS Human protein_coding chr1:84867634 chr1:84867636 nonsynonymous SNV 0.963 4 23 hm5C_associated_SNPs_54714 0 0 0 0 1 DNASE2B chr1:84867584 3'AG 84867584 Downstream 53bp
chr13 45583014 45583014 1 + G T UCEC 45583012 + 45582992 45583032 41 GCAGAGATGATCCAGGACAACAGGTATCATCATCCCATTTC GCAGAGATGATCCAGGACAACATGTATCATCATCCCATTTC < 41bp 0.799057715042965 0.493788182233841 0.25843093 0.052200347 prediction 0.598115430085929 Functional Loss - GPALPP1 ENSG00000133114 CDS Human protein_coding chr13:45583012 chr13:45583014 nonsynonymous SNV 0.779 0 23 hm5C_associated_SNPs_54716 0 0 1 0 2 GPALPP1 chr13:45582930 3'AG 45582930 Downstream 85bp
chr13 45583014 45583014 1 + G T UCEC 45583012 + 45582992 45583032 41 GCAGAGATGATCCAGGACAACAGGTATCATCATCCCATTTC GCAGAGATGATCCAGGACAACATGTATCATCATCCCATTTC < 41bp 0.799057715042965 0.493788182233841 0.25843093 0.052200347 prediction 0.598115430085929 Functional Loss - GPALPP1 ENSG00000133114 CDS Human protein_coding chr13:45583012 chr13:45583014 nonsynonymous SNV 0.779 0 23 hm5C_associated_SNPs_54716 0 0 1 0 2 GPALPP1 chr13:45583014 5'GT 45583014 Upstream 1bp
chrX 14891657 14891657 1 + G T ESCA 14891655 + 14891635 14891675 41 ATCCACGACGGTGATCATGGCAGAGGTGAGGAGCCTATTGC ATCCACGACGGTGATCATGGCATAGGTGAGGAGCCTATTGC < 41bp 0.799028315628542 0.496948035550822 0.8750874 0.5324138 prediction 0.598056631257085 Functional Loss - MOSPD2 ENSG00000130150 CDS Human protein_coding chrX:14891655 chrX:14891657 stopgain 0.992 0 23 hm5C_associated_SNPs_54720 0 0 0 0 1 MOSPD2 chrX:14891659 5'GT 14891659 Upstream 3bp
chr1 236343240 236343240 1 + G T UCEC 236343237 + 236343217 236343257 41 CGTGATACTGCTTTACACCTCTCGGGCCTGCTACAACCTGT CGTGATACTGCTTTACACCTCTCTGGCCTGCTACAACCTGT < 41bp 0.799025444041955 0.423387321174484 0.090177655 0.041634023 prediction 0.598050888083911 Functional Loss - GPR137B ENSG00000077585 CDS Human protein_coding chr1:236343237 chr1:236343240 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_54721 0 0 1 0 2 GPR137B chr1:236343179 3'AG 236343179 Downstream 62bp
chr1 236343240 236343240 1 + G T UCEC 236343237 + 236343217 236343257 41 CGTGATACTGCTTTACACCTCTCGGGCCTGCTACAACCTGT CGTGATACTGCTTTACACCTCTCTGGCCTGCTACAACCTGT < 41bp 0.799025444041955 0.423387321174484 0.090177655 0.041634023 prediction 0.598050888083911 Functional Loss - GPR137B ENSG00000077585 CDS Human protein_coding chr1:236343237 chr1:236343240 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_54721 0 0 1 0 2 GPR137B chr1:236343328 5'GT 236343328 Upstream 89bp
chr12 1741857 1741857 1 + G T LUSC 1741854 + 1741834 1741874 41 TTGAACCCGGTGCAGAGACCCGAGATGTTTATCATCGGTGC TTGAACCCGGTGCAGAGACCCGATATGTTTATCATCGGTGC < 41bp 0.885832149752147 0.586811386788966 0.5832613 0.13510829 prediction 0.598041525926363 Functional Loss - WNT5B ENSG00000111186 CDS Human protein_coding chr12:1741854 chr12:1741857 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_54723 0 0 1 0 1 WNT5B chr12:1741824 3'AG 1741824 Downstream 34bp
chr1 37947279 37947279 1 + G T ESCA 37947276 + 37947256 37947296 41 CACGACGCGTGGGTGGCAAGCGGGTGGTGTGCTATGACGAC CACGACGCGTGGGTGGCAAGCGGTTGGTGTGCTATGACGAC < 41bp 0.799020391391858 0.406006373371353 0.8675729 0.30865794 prediction 0.598040782783716 Functional Loss - ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947276 chr1:37947279 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_54724 0 0 1 0 1 ZC3H12A chr1:37947202 3'AG 37947202 Downstream 78bp
chr22 37273682 37273682 1 + G T UCEC 37273679 + 37273659 37273699 41 TTCCCATGCAGGCGGGAGTTCCAGAGAGAGGACATAGCTCT TTCCCATGCAGGCGGGAGTTCCATAGAGAGGACATAGCTCT < 41bp 0.799016577163049 0.425948056416885 0.9065585 0.17866698 prediction 0.598033154326097 Functional Loss - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37273679 chr22:37273682 nonsynonymous SNV 0.980 0 24 hm5C_associated_SNPs_54726 0 0 0 0 1 NCF4 chr22:37273670 3'AG 37273670 Downstream 13bp
chr6 34825589 34825589 1 + G T OV 34825587 + 34825567 34825607 41 TCTGGGGAAACCTCTTTTGCCTGGATTTATACCGCAGCTTG TCTGGGGAAACCTCTTTTGCCTTGATTTATACCGCAGCTTG < 41bp 0.798997209440049 0.485185116045498 0.23396024 0.076762915 prediction 0.597994418880097 Functional Loss - UHRF1BP1 ENSG00000065060 CDS Human protein_coding chr6:34825587 chr6:34825589 synonymous SNV . 0 23 hm5C_associated_SNPs_54728 0 0 1 0 1 UHRF1BP1 chr6:34825501 3'AG 34825501 Downstream 89bp
chr2 79350037 79350037 1 + G T LUAD 79350035 + 79350015 79350055 41 TGGGGCATTGGAGCCCCAAGCAGTGTTAATCCTGGCTACTG TGGGGCATTGGAGCCCCAAGCATTGTTAATCCTGGCTACTG < 41bp 0.798986866022404 0.462461448596656 0.9208744 0.5753952 prediction 0.597973732044808 Functional Loss - REG1A ENSG00000115386 CDS Human protein_coding chr2:79350035 chr2:79350037 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_54729 0 0 0 0 2 REG1A chr2:79349967 3'AG 79349967 Downstream 71bp
chr2 79350037 79350037 1 + G T LUAD 79350035 + 79350015 79350055 41 TGGGGCATTGGAGCCCCAAGCAGTGTTAATCCTGGCTACTG TGGGGCATTGGAGCCCCAAGCATTGTTAATCCTGGCTACTG < 41bp 0.798986866022404 0.462461448596656 0.9208744 0.5753952 prediction 0.597973732044808 Functional Loss - REG1A ENSG00000115386 CDS Human protein_coding chr2:79350035 chr2:79350037 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_54729 0 0 0 0 2 REG1A chr2:79350078 5'GT 79350078 Upstream 42bp
chr17 27382858 27382858 1 + G T LUSC 27382855 + 27382835 27382875 41 CCCCTGATGAGCAGTTCATTCTCGATCGCCACCCAAAGTAT CCCCTGATGAGCAGTTCATTCTCTATCGCCACCCAAAGTAT < 41bp 0.881614788215365 0.582644750571566 0.30558434 0.90751535 prediction 0.597940075287597 Functional Loss - PIPOX ENSG00000179761 CDS Human protein_coding chr17:27382855 chr17:27382858 nonsynonymous SNV 0.978 5 24 hm5C_associated_SNPs_54730 0 0 1 0 2 PIPOX chr17:27382831 3'AG 27382831 Downstream 28bp
chr17 27382858 27382858 1 + G T LUSC 27382855 + 27382835 27382875 41 CCCCTGATGAGCAGTTCATTCTCGATCGCCACCCAAAGTAT CCCCTGATGAGCAGTTCATTCTCTATCGCCACCCAAAGTAT < 41bp 0.881614788215365 0.582644750571566 0.30558434 0.90751535 prediction 0.597940075287597 Functional Loss - PIPOX ENSG00000179761 CDS Human protein_coding chr17:27382855 chr17:27382858 nonsynonymous SNV 0.978 5 24 hm5C_associated_SNPs_54730 0 0 1 0 2 PIPOX chr17:27382906 5'GT 27382906 Upstream 49bp
chr8 86044041 86044041 1 + G T LUSC 86044038 + 86044018 86044058 41 TTTTTACTGATGCTGACTTCCAGGATGCCTTAGCTAAAGAA TTTTTACTGATGCTGACTTCCAGTATGCCTTAGCTAAAGAA < 41bp 0.868180287350959 0.56921547638825 0.806244 0.0479708 prediction 0.597929621925418 Functional Loss - LRRCC1 ENSG00000133739 CDS Human protein_coding chr8:86044038 chr8:86044041 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_54731 0 0 1 0 1 LRRCC1 chr8:86043995 3'AG 86043995 Downstream 47bp
chr20 61950474 61950474 1 + G T LUAD 61950471 + 61950451 61950491 41 TCTTCCTTGTGCGCCTACTTCCCGAGACACCCCGTGAGGCC TCTTCCTTGTGCGCCTACTTCCCTAGACACCCCGTGAGGCC < 41bp 0.798950459297812 0.417686980519411 0.13753125 0.031282723 prediction 0.597900918595623 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61950471 chr20:61950474 stopgain 0.010 0 24 hm5C_associated_SNPs_54732 0 0 0 0 2 COL20A1 chr20:61950410 3'AG 61950410 Downstream 65bp
chr20 61950474 61950474 1 + G T LUAD 61950471 + 61950451 61950491 41 TCTTCCTTGTGCGCCTACTTCCCGAGACACCCCGTGAGGCC TCTTCCTTGTGCGCCTACTTCCCTAGACACCCCGTGAGGCC < 41bp 0.798950459297812 0.417686980519411 0.13753125 0.031282723 prediction 0.597900918595623 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61950471 chr20:61950474 stopgain 0.010 0 24 hm5C_associated_SNPs_54732 0 0 0 0 2 COL20A1 chr20:61950552 5'GT 61950552 Upstream 79bp
chr20 61598073 61598073 1 + G T LUAD 61598071 + 61598051 61598091 41 ACAGGTGTGGCCAACACAGCCGGGGCCTTGGCAGGTGAGGG ACAGGTGTGGCCAACACAGCCGTGGCCTTGGCAGGTGAGGG < 41bp 0.798937826561001 0.476519953567594 0.9003048 0.51144767 prediction 0.597875653122002 Functional Loss - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61598071 chr20:61598073 nonsynonymous SNV 0.749 4 23 hm5C_associated_SNPs_54735 0 0 1 0 2 SLC17A9 chr20:61598055 3'AG 61598055 Downstream 19bp
chr20 61598073 61598073 1 + G T LUAD 61598071 + 61598051 61598091 41 ACAGGTGTGGCCAACACAGCCGGGGCCTTGGCAGGTGAGGG ACAGGTGTGGCCAACACAGCCGTGGCCTTGGCAGGTGAGGG < 41bp 0.798937826561001 0.476519953567594 0.9003048 0.51144767 prediction 0.597875653122002 Functional Loss - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61598071 chr20:61598073 nonsynonymous SNV 0.749 4 23 hm5C_associated_SNPs_54735 0 0 1 0 2 SLC17A9 chr20:61598084 5'GT 61598084 Upstream 12bp
chr17 65716058 65716058 1 + G T LUAD 65716055 + 65716035 65716075 41 GGAATAATGAAGATGTAAACCTGGATAAAGTATTTAAAGCT GGAATAATGAAGATGTAAACCTGTATAAAGTATTTAAAGCT < 41bp 0.798937629378081 0.465853606270819 0.16765243 0.102199525 prediction 0.597875258756163 Functional Loss - NOL11 ENSG00000130935 CDS Human protein_coding chr17:65716055 chr17:65716058 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_54736 0 0 1 0 1 NOL11 chr17:65716078 5'GT 65716078 Upstream 21bp
chr7 66240263 66240263 1 + G T UCEC 66240260 + 66240240 66240280 41 TTGCCAGCAGTCAGAGCAGCCAAGGGGCCCAATCCCTCACA TTGCCAGCAGTCAGAGCAGCCAATGGGCCCAATCCCTCACA < 41bp 0.798916033283187 0.421068920397912 0.9231789 0.6784831 prediction 0.597832066566375 Functional Loss - RABGEF1 ENSG00000154710;ENSG00000243335 CDS Human other chr7:66240260 chr7:66240263 nonsynonymous SNV 0.981 2 24 hm5C_associated_SNPs_54739 0 0 1 0 1 RABGEF1 chr7:66240214 3'AG 66240214 Downstream 50bp
chr2 241808422 241808422 1 + G T LUAD 241808420 + 241808400 241808440 41 GCCGGGGGGCTGCAGATGATCGGGTCCATGAGCAAGGATAT GCCGGGGGGCTGCAGATGATCGTGTCCATGAGCAAGGATAT < 41bp 0.845471944153263 0.546572904718858 0.80804706 0.12015894 prediction 0.597798078868812 Functional Loss - AGXT ENSG00000172482 CDS Human protein_coding chr2:241808420 chr2:241808422 nonsynonymous SNV 0.147 5 23 hm5C_associated_SNPs_54744 0 0 1 0 1 AGXT chr2:241808447 5'GT 241808447 Upstream 26bp
chr1 34666572 34666572 1 + G T COAD 34666569 + 34666549 34666589 41 TATGAGTTCCTTGGGGCCACCAAGAACCCAAGCGGGCAGCC TATGAGTTCCTTGGGGCCACCAATAACCCAAGCGGGCAGCC < 41bp 0.798894882456288 0.422850865143117 0.160976 0.04563859 prediction 0.597789764912577 Functional Loss - C1orf94 ENSG00000142698 CDS Human protein_coding chr1:34666569 chr1:34666572 nonsynonymous SNV 0.824 4 24 hm5C_associated_SNPs_54745 0 0 0 0 1 C1orf94 chr1:34666633 5'GT 34666633 Upstream 62bp
chr10 70742369 70742369 1 + G T UCEC 70742366 + 70742346 70742386 41 GCAACCAGAACTGGAAGGACCACGGGAAGGATATGGAGGCT GCAACCAGAACTGGAAGGACCACTGGAAGGATATGGAGGCT < 41bp 0.872310500504539 0.573438110007846 0.51378304 0.3166371 prediction 0.597744780993385 Functional Loss - DDX21 ENSG00000165732 CDS Human protein_coding chr10:70742366 chr10:70742369 nonsynonymous SNV 0.197 0 24 hm5C_associated_SNPs_54748 0 0 1 0 1 DDX21 chr10:70742299 3'AG 70742299 Downstream 71bp
chr1 209781232 209781232 1 + A T LAML 209781228 + 209781208 209781248 41 GAAGTGCTGGCCCAGAAACCCTACAGCAAGGCTGTGGATTG GAAGTGCTGGCCCAGAAACCCTACTGCAAGGCTGTGGATTG < 41bp 0.798843880426164 0.47357623456335 0.9037453 0.18113357 prediction 0.597687760852328 Functional Loss - CAMK1G ENSG00000008118 CDS Human protein_coding chr1:209781228 chr1:209781232 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_54751 0 0 0 0 2 CAMK1G chr1:209781203 3'AG 209781203 Downstream 30bp
chr1 209781232 209781232 1 + A T LAML 209781228 + 209781208 209781248 41 GAAGTGCTGGCCCAGAAACCCTACAGCAAGGCTGTGGATTG GAAGTGCTGGCCCAGAAACCCTACTGCAAGGCTGTGGATTG < 41bp 0.798843880426164 0.47357623456335 0.9037453 0.18113357 prediction 0.597687760852328 Functional Loss - CAMK1G ENSG00000008118 CDS Human protein_coding chr1:209781228 chr1:209781232 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_54751 0 0 0 0 2 CAMK1G chr1:209781278 5'GT 209781278 Upstream 47bp
chr11 71507110 71507110 1 - C A rs76695292 71507112 - 71507092 71507132 41 TCCCGGCAGGCAGCCAGCCTCCGCAGGACCCCGACCAGCGA TCCCGGCAGGCAGCCAGCCTCCTCAGGACCCCGACCAGCGA < 41bp 0.832848605529971 0.534019286611357 0.5014079 0.06745362 prediction 0.597658637837227 Functional Loss - FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71507112 chr11:71507110 stopgain 0.002 0 23 hm5C_associated_SNPs_54753 0 0 0 0 1 FAM86C1 chr11:71507171 3'AG 71507171 Downstream 62bp
chr10 82363494 82363494 1 + G T UCEC 82363491 + 82363471 82363511 41 CCAGAGCCATGAGCAGGAGGCAAGACTCTACCACCACCTCC CCAGAGCCATGAGCAGGAGGCAATACTCTACCACCACCTCC < 41bp 0.890427918193157 0.591608309004174 0.55572873 0.29612523 prediction 0.597639218377966 Functional Loss - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82363491 chr10:82363494 nonsynonymous SNV 0.458 1 24 hm5C_associated_SNPs_54754 0 0 0 0 1 SH2D4B chr10:82363551 5'GT 82363551 Upstream 58bp
chr7 100276202 100276202 1 + G T SARC 100276200 + 100276180 100276220 41 GCTGGCTACGACGACTTCAACTGCAACATCTGGGATGCCAT GCTGGCTACGACGACTTCAACTTCAACATCTGGGATGCCAT < 41bp 0.817815695581555 0.519000331351243 0.20541161 0.06281057 prediction 0.597630728460625 Functional Loss - GNB2 ENSG00000172354 CDS Human protein_coding chr7:100276200 chr7:100276202 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_54755 0 0 1 0 1 GNB2 chr7:100276237 5'GT 100276237 Upstream 36bp
chr4 123542069 123542069 1 - T G COAD 123542073 - 123542053 123542093 41 ACAAATCAAGCTCCCAAGGTCAAGATCGCCACATGATTAGA ACAAATCAAGCTCCCAAGGTCAAGCTCGCCACATGATTAGA < 41bp 0.798805424453658 0.4201892366123 0.044012725 0.018244535 prediction 0.597610848907316 Functional Loss - IL21 ENSG00000138684 CDS Human protein_coding chr4:123542073 chr4:123542069 nonsynonymous SNV 0.813 1 25 hm5C_associated_SNPs_54758 0 0 0 0 1 IL21 chr4:123541999 5'GT 123541999 Upstream 71bp
chr4 123542070 123542070 1 - C A UCEC 123542073 - 123542053 123542093 41 ACAAATCAAGCTCCCAAGGTCAAGATCGCCACATGATTAGA ACAAATCAAGCTCCCAAGGTCAATATCGCCACATGATTAGA < 41bp 0.798805424453658 0.43416337707107 0.044012725 0.016760617 prediction 0.597610848907316 Functional Loss - IL21 ENSG00000138684 CDS Human protein_coding chr4:123542073 chr4:123542070 nonsynonymous SNV 0.798 3 24 hm5C_associated_SNPs_54759 0 0 0 0 1 IL21 chr4:123541999 5'GT 123541999 Upstream 72bp
chr12 31244682 31244682 1 + G T STAD 31244680 + 31244660 31244700 41 TGCTGCCCTATCAGATGCTGCTGCATGCGGCCACTCGGCAG TGCTGCCCTATCAGATGCTGCTTCATGCGGCCACTCGGCAG < 41bp 0.816875047278069 0.51807537707035 0.85868305 0.40619975 prediction 0.597599340415439 Functional Loss - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244680 chr12:31244682 synonymous SNV . 0 23 hm5C_associated_SNPs_54761 0 0 1 0 1 DDX11 chr12:31244653 3'AG 31244653 Downstream 30bp
chr1 32557320 32557320 1 + G C LUAD 32557319 + 32557299 32557339 41 TGCAGCTGAATTGCGACCTCCGCAAGACAAGCCTCTTCAAC TGCAGCTGAATTGCGACCTCCCCAAGACAAGCCTCTTCAAC < 41bp 0.801593525351815 0.502815916295153 0.090032786 0.078823864 prediction 0.597555218113323 Functional Loss - TMEM39B ENSG00000121775 CDS Human protein_coding chr1:32557319 chr1:32557320 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_54762 0 0 1 2 2 TMEM39B chr1:32557273 3'AG 32557273 Downstream 48bp
chr1 32557320 32557320 1 + G C LUAD 32557319 + 32557299 32557339 41 TGCAGCTGAATTGCGACCTCCGCAAGACAAGCCTCTTCAAC TGCAGCTGAATTGCGACCTCCCCAAGACAAGCCTCTTCAAC < 41bp 0.801593525351815 0.502815916295153 0.090032786 0.078823864 prediction 0.597555218113323 Functional Loss - TMEM39B ENSG00000121775 CDS Human protein_coding chr1:32557319 chr1:32557320 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_54762 0 0 1 2 2 TMEM39B chr1:32557276 3'AG 32557276 Downstream 45bp
chr1 25611072 25611072 1 + G T UCEC 25611069 + 25611049 25611089 41 CTCCCCACCGAGCAGTTGGCCAAGATCTGACCGTGATGGCG CTCCCCACCGAGCAGTTGGCCAATATCTGACCGTGATGGCG < 41bp 0.798768673160995 0.422987511877912 0.19495246 0.07025179 prediction 0.59753734632199 Functional Loss - RHD ENSG00000187010 CDS Human protein_coding chr1:25611069 chr1:25611072 nonsynonymous SNV 0.005 4 24 hm5C_associated_SNPs_54765 0 0 1 0 1 RHD chr1:25611064 3'AG 25611064 Downstream 9bp
chr19 55175308 55175308 1 + G T SKCM 55175305 + 55175285 55175325 41 GTGTCAGGGGACCCTGGAGGCTCGGGAGTACCGTCTGGATA GTGTCAGGGGACCCTGGAGGCTCTGGAGTACCGTCTGGATA < 41bp 0.876886450702173 0.578121394020114 0.23225328 0.27737838 prediction 0.597530113364119 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55175305 chr19:55175308 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_54766 0 0 0 0 2 LILRB4 chr19:55175212 3'AG 55175212 Downstream 97bp
chr19 55175308 55175308 1 + G T SKCM 55175305 + 55175285 55175325 41 GTGTCAGGGGACCCTGGAGGCTCGGGAGTACCGTCTGGATA GTGTCAGGGGACCCTGGAGGCTCTGGAGTACCGTCTGGATA < 41bp 0.876886450702173 0.578121394020114 0.23225328 0.27737838 prediction 0.597530113364119 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55175305 chr19:55175308 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_54766 0 0 0 0 2 LILRB4 chr19:55175261 3'AG 55175261 Downstream 48bp
chr4 74319522 74319522 1 + G T THYM 74319520 + 74319500 74319540 41 GAAGCAAAAGCCACAAATAACAGAGGAACAACTTGAGGCTG GAAGCAAAAGCCACAAATAACATAGGAACAACTTGAGGCTG < 41bp 0.798757505300488 0.478112290631906 0.9422072 0.8904418 prediction 0.597515010600976 Functional Loss - AFP ENSG00000081051 CDS Human protein_coding chr4:74319520 chr4:74319522 stopgain 0.986 0 23 hm5C_associated_SNPs_54767 0 0 1 0 2 AFP chr4:74319482 3'AG 74319482 Downstream 41bp
chr4 74319522 74319522 1 + G T THYM 74319520 + 74319500 74319540 41 GAAGCAAAAGCCACAAATAACAGAGGAACAACTTGAGGCTG GAAGCAAAAGCCACAAATAACATAGGAACAACTTGAGGCTG < 41bp 0.798757505300488 0.478112290631906 0.9422072 0.8904418 prediction 0.597515010600976 Functional Loss - AFP ENSG00000081051 CDS Human protein_coding chr4:74319520 chr4:74319522 stopgain 0.986 0 23 hm5C_associated_SNPs_54767 0 0 1 0 2 AFP chr4:74319614 5'GT 74319614 Upstream 93bp
chr11 15262041 15262041 1 + G T SARC 15262039 + 15262019 15262059 41 AGATCCCCATCAGAGAGGAACAGCAGTGACGCCGTGCTTGT AGATCCCCATCAGAGAGGAACATCAGTGACGCCGTGCTTGT < 41bp 0.798755685373167 0.469103985528559 0.34425625 0.27907735 prediction 0.597511370746334 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15262039 chr11:15262041 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_54768 0 0 1 0 2 INSC chr11:15261993 3'AG 15261993 Downstream 49bp
chr11 15262041 15262041 1 + G T SARC 15262039 + 15262019 15262059 41 AGATCCCCATCAGAGAGGAACAGCAGTGACGCCGTGCTTGT AGATCCCCATCAGAGAGGAACATCAGTGACGCCGTGCTTGT < 41bp 0.798755685373167 0.469103985528559 0.34425625 0.27907735 prediction 0.597511370746334 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15262039 chr11:15262041 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_54768 0 0 1 0 2 INSC chr11:15262069 5'GT 15262069 Upstream 29bp
chr5 34867153 34867153 1 + G T UCEC 34867151 + 34867131 34867171 41 AGCTGAGGAGGAACCACAACCAGGCCATCCAGTACTTGCAG AGCTGAGGAGGAACCACAACCATGCCATCCAGTACTTGCAG < 41bp 0.798750898526435 0.478889034265303 0.88839626 0.21957344 prediction 0.597501797052871 Functional Loss - TTC23L ENSG00000205838 CDS Human protein_coding chr5:34867151 chr5:34867153 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_54769 0 0 0 0 1 TTC23L chr5:34867174 5'GT 34867174 Upstream 22bp
chr10 101578643 101578643 1 + G T LUSC 101578641 + 101578621 101578661 41 TCTTCTAGATGACCCCCTGTCTGCAGTGGATGCTCATGTAG TCTTCTAGATGACCCCCTGTCTTCAGTGGATGCTCATGTAG < 41bp 0.798747336463444 0.4925879599106 0.051501572 0.027693868 prediction 0.597494672926888 Functional Loss - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101578641 chr10:101578643 nonsynonymous SNV 0.673 5 23 hm5C_associated_SNPs_54771 0 0 1 0 1 ABCC2 chr10:101578714 5'GT 101578714 Upstream 72bp
chr10 11797576 11797576 1 + G T LUAD 11797573 + 11797553 11797593 41 CGGGCTCTTCTGTTCTACCCCTGGGGTTGCCTTGGCAAGAG CGGGCTCTTCTGTTCTACCCCTGTGGTTGCCTTGGCAAGAG < 41bp 0.8868513871245 0.588139140043898 0.7814189 0.33106703 prediction 0.597424494161204 Functional Loss - ECHDC3 ENSG00000134463 CDS Human protein_coding chr10:11797573 chr10:11797576 nonsynonymous SNV 0.975 3 24 hm5C_associated_SNPs_54774 0 0 1 0 1 ECHDC3 chr10:11797607 5'GT 11797607 Upstream 32bp
chr7 57510010 57510010 1 + G T LUSC 57510008 + 57509988 57510028 41 CAGATTTATGGCTAAAAGACCGGGACCCCCTGGAAGCCGAG CAGATTTATGGCTAAAAGACCGTGACCCCCTGGAAGCCGAG < 41bp 0.798685676800556 0.485568605921008 0.49677464 0.065187484 prediction 0.597371353601113 Functional Loss - ZNF716 ENSG00000182111 CDS Human protein_coding chr7:57510008 chr7:57510010 stopgain 0.098 0 23 hm5C_associated_SNPs_54775 0 0 0 0 1 ZNF716 chr7:57510033 5'GT 57510033 Upstream 24bp
chr2 231090568 231090568 1 + G T LUAD 231090566 + 231090546 231090586 41 CCTAGGCCAAGCTCATGGCCCAGCAGGGCCAGCAGGGGCAG CCTAGGCCAAGCTCATGGCCCATCAGGGCCAGCAGGGGCAG < 41bp 0.830594204250752 0.531922844085921 0.34457952 0.18559742 prediction 0.597342720329662 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231090566 chr2:231090568 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_54776 0 0 0 0 1 SP140 chr2:231090618 5'GT 231090618 Upstream 51bp
chr15 65239646 65239646 1 + G T SARC 65239643 + 65239623 65239663 41 GGACCACCCCAGTGATCCCTCTGGGAAGAGCTTGTCCTTTA GGACCACCCCAGTGATCCCTCTGTGAAGAGCTTGTCCTTTA < 41bp 0.887252160653999 0.58859762502499 0.43578056 0.050212473 prediction 0.597309071258018 Functional Loss - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65239643 chr15:65239646 nonsynonymous SNV 0.931 0 24 hm5C_associated_SNPs_54779 0 0 0 0 1 ANKDD1A chr15:65239624 3'AG 65239624 Downstream 23bp
chr1 65145414 65145414 1 + G T UCEC 65145412 + 65145392 65145432 41 AGATTCATCGCCGGAGCCATCAGCATATGTCTCCTCTTGCT AGATTCATCGCCGGAGCCATCATCATATGTCTCCTCTTGCT < 41bp 0.798649936363044 0.474657983757115 0.7242496 0.17245954 prediction 0.597299872726089 Functional Loss - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65145412 chr1:65145414 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_54780 0 0 1 0 1 CACHD1 chr1:65145439 5'GT 65145439 Upstream 26bp
chrX 48650258 48650258 1 + G T UCEC 48650256 + 48650236 48650276 41 ACCTGCCCCCAACAGTCTTTCAGGTGTACCCATTGCTCAAC ACCTGCCCCCAACAGTCTTTCATGTGTACCCATTGCTCAAC < 41bp 0.798648442258977 0.45524472736441 0.9528544 0.69586957 prediction 0.597296884517954 Functional Loss - GATA1 ENSG00000102145 CDS Human protein_coding chrX:48650256 chrX:48650258 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_54781 0 0 0 0 1 GATA1 chrX:48650251 3'AG 48650251 Downstream 8bp
chr22 50925873 50925873 1 + G T STAD 50925870 + 50925850 50925890 41 GACCCAGAGGTGGCCAAAGACAAGGCCAGCTTCCGGAACTA GACCCAGAGGTGGCCAAAGACAATGCCAGCTTCCGGAACTA < 41bp 0.89575489704486 0.597119381271088 0.8634583 0.42496222 prediction 0.597271031547543 Functional Loss - MIOX ENSG00000100253 CDS Human protein_coding chr22:50925870 chr22:50925873 nonsynonymous SNV 0.911 1 24 hm5C_associated_SNPs_54783 0 0 0 0 2 MIOX chr22:50925814 3'AG 50925814 Downstream 60bp
chr22 50925873 50925873 1 + G T STAD 50925870 + 50925850 50925890 41 GACCCAGAGGTGGCCAAAGACAAGGCCAGCTTCCGGAACTA GACCCAGAGGTGGCCAAAGACAATGCCAGCTTCCGGAACTA < 41bp 0.89575489704486 0.597119381271088 0.8634583 0.42496222 prediction 0.597271031547543 Functional Loss - MIOX ENSG00000100253 CDS Human protein_coding chr22:50925870 chr22:50925873 nonsynonymous SNV 0.911 1 24 hm5C_associated_SNPs_54783 0 0 0 0 2 MIOX chr22:50925894 5'GT 50925894 Upstream 22bp
chr19 34868446 34868446 1 + G T GBM 34868443 + 34868423 34868463 41 GACTGGAAGGGGTACACAGGCAAGACCATCACGGACGTCAT GACTGGAAGGGGTACACAGGCAATACCATCACGGACGTCAT < 41bp 0.798620996069395 0.420105456333677 0.22526678 0.18711415 prediction 0.597241992138791 Functional Loss - GPI ENSG00000105220 CDS Human protein_coding chr19:34868443 chr19:34868446 nonsynonymous SNV 0.598 5 24 hm5C_associated_SNPs_54787 0 0 1 0 1 GPI chr19:34868491 5'GT 34868491 Upstream 46bp
chr14 23311709 23311709 1 + G T HNSC 23311707 + 23311687 23311727 41 TGTGGGAGAGTGCCACACCACTGCGCTTCCGCGAGGTGCCC TGTGGGAGAGTGCCACACCACTTCGCTTCCGCGAGGTGCCC < 41bp 0.798584161487374 0.467219522756418 0.16943043 0.11267698 prediction 0.597168322974747 Functional Loss - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23311707 chr14:23311709 synonymous SNV . 0 23 hm5C_associated_SNPs_54789 0 0 0 0 1 MMP14 chr14:23311619 3'AG 23311619 Downstream 91bp
chr7 102949419 102949419 1 + G T UCEC 102949416 + 102949396 102949436 41 TAGATTCGTGTGAGGGATGACAAGATGCCTTTGGCGCACCT TAGATTCGTGTGAGGGATGACAATATGCCTTTGGCGCACCT < 41bp 0.798566743178374 0.434461645434221 0.6770529 0.12102923 prediction 0.597133486356749 Functional Loss - PMPCB ENSG00000105819 CDS Human protein_coding chr7:102949416 chr7:102949419 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_54790 0 0 1 0 1 PMPCB chr7:102949399 3'AG 102949399 Downstream 21bp
chr16 68941413 68941413 1 + G T LIHC 68941410 + 68941390 68941430 41 AGCAGGGCCGGGTGGAGCATCTCGGGGACTTGCTGTCCCAC AGCAGGGCCGGGTGGAGCATCTCTGGGACTTGCTGTCCCAC < 41bp 0.889277059318715 0.590732276386251 0.91969216 0.156084 prediction 0.597089565864927 Functional Loss - TANGO6 ENSG00000103047 CDS Human protein_coding chr16:68941410 chr16:68941413 nonsynonymous SNV 0.838 3 24 hm5C_associated_SNPs_54791 0 0 0 0 2 TANGO6 chr16:68941346 3'AG 68941346 Downstream 68bp
chr16 68941413 68941413 1 + G T LIHC 68941410 + 68941390 68941430 41 AGCAGGGCCGGGTGGAGCATCTCGGGGACTTGCTGTCCCAC AGCAGGGCCGGGTGGAGCATCTCTGGGACTTGCTGTCCCAC < 41bp 0.889277059318715 0.590732276386251 0.91969216 0.156084 prediction 0.597089565864927 Functional Loss - TANGO6 ENSG00000103047 CDS Human protein_coding chr16:68941410 chr16:68941413 nonsynonymous SNV 0.838 3 24 hm5C_associated_SNPs_54791 0 0 0 0 2 TANGO6 chr16:68941478 5'GT 68941478 Upstream 66bp
chr15 65345341 65345341 1 + G T UCEC 65345339 + 65345319 65345359 41 GCCACCAGAAAAAGAAACTCCAGAAGTCCTGCATTTGGATG GCCACCAGAAAAAGAAACTCCATAAGTCCTGCATTTGGATG < 41bp 0.798544590237079 0.482042189104201 0.8415788 0.16104776 prediction 0.597089180474157 Functional Loss - SLC51B ENSG00000186198 CDS Human protein_coding chr15:65345339 chr15:65345341 stopgain 0.207 0 23 hm5C_associated_SNPs_54792 0 0 0 0 1 SLC51B chr15:65345304 3'AG 65345304 Downstream 38bp
chr7 7636043 7636043 1 + A T BRCA 7636039 + 7636019 7636059 41 TGGCTGTCGAAAACCACTTCCTCGATGTGCGCTTTGTCTCA TGGCTGTCGAAAACCACTTCCTCGTTGTGCGCTTTGTCTCA < 41bp 0.845197001913264 0.546660799638547 0.92062706 0.021541119 prediction 0.597072404549435 Functional Loss - MIOS ENSG00000164654 CDS Human protein_coding chr7:7636039 chr7:7636043 synonymous SNV . 0 25 hm5C_associated_SNPs_54796 0 0 1 0 1 MIOS chr7:7636092 5'GT 7636092 Upstream 50bp
chr10 45877967 45877967 1 + G T LUAD 45877964 + 45877944 45877984 41 ACGTGACTGTGGACGAGGAACTGGGCGAGATCCAGCTGGTC ACGTGACTGTGGACGAGGAACTGTGCGAGATCCAGCTGGTC < 41bp 0.798519400648009 0.41212484433692 0.888337 0.6169024 prediction 0.597038801296017 Functional Loss - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45877964 chr10:45877967 nonsynonymous SNV 0.986 4 24 hm5C_associated_SNPs_54797 0 0 1 0 1 ALOX5 chr10:45877931 3'AG 45877931 Downstream 37bp
chr10 135279765 135279765 1 + G T SARC 135279763 + 135279743 135279783 41 TGGCCCAGGCCCCCCACTGCCTGCAGCTCCCTTCCGGACAT TGGCCCAGGCCCCCCACTGCCTTCAGCTCCCTTCCGGACAT < 41bp 0.842800602931879 0.544298140427192 0.8697834 0.80724263 prediction 0.597004925009375 Functional Loss - SCART1 ENSG00000214279 ncRNA_exonic Human protein_coding chr10:135279763 chr10:135279765 . . 0 23 hm5C_associated_SNPs_54801 0 0 1 0 1 SCART1 chr10:135279739 3'AG 135279739 Downstream 27bp
chr3 14744664 14744664 1 + G T BRCA 14744662 + 14744642 14744682 41 TCTAGAACTACAGAAGATGTCAGCATGCCGCCCCTGCATCG TCTAGAACTACAGAAGATGTCATCATGCCGCCCCTGCATCG < 41bp 0.850070644980295 0.551569576373907 0.28806075 0.09470627 prediction 0.597002137212777 Functional Loss - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14744662 chr3:14744664 nonsynonymous SNV 0.005 0 23 hm5C_associated_SNPs_54802 0 0 0 0 1 C3orf20 chr3:14744637 3'AG 14744637 Downstream 28bp
chr9 137774391 137774391 1 + G T SKCM 137774389 + 137774369 137774409 41 CAGAGGTGAAGATGGTGGGCCTGGAGGGCTCTGACAAGCTC CAGAGGTGAAGATGGTGGGCCTTGAGGGCTCTGACAAGCTC < 41bp 0.834890905761367 0.536422765088516 0.35611337 0.27366304 prediction 0.596936281345701 Functional Loss - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137774389 chr9:137774391 synonymous SNV . 0 23 hm5C_associated_SNPs_54807 0 0 0 0 2 FCN2 chr9:137774372 3'AG 137774372 Downstream 20bp
chr9 137774391 137774391 1 + G T SKCM 137774389 + 137774369 137774409 41 CAGAGGTGAAGATGGTGGGCCTGGAGGGCTCTGACAAGCTC CAGAGGTGAAGATGGTGGGCCTTGAGGGCTCTGACAAGCTC < 41bp 0.834890905761367 0.536422765088516 0.35611337 0.27366304 prediction 0.596936281345701 Functional Loss - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137774389 chr9:137774391 synonymous SNV . 0 23 hm5C_associated_SNPs_54807 0 0 0 0 2 FCN2 chr9:137774485 5'GT 137774485 Upstream 95bp
chr5 161292765 161292765 1 + A T LUSC 161292761 + 161292741 161292781 41 GTGAAGACTGATATCTTCGTCACCAGTTTCGGACCCGTTTC GTGAAGACTGATATCTTCGTCACCTGTTTCGGACCCGTTTC < 41bp 0.798455279807001 0.491073791177009 0.08650184 0.18782094 prediction 0.596910559614002 Functional Loss - GABRA1 ENSG00000022355 CDS Human protein_coding chr5:161292761 chr5:161292765 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_54808 0 0 0 0 2 GABRA1 chr5:161292727 3'AG 161292727 Downstream 39bp
chr5 161292765 161292765 1 + A T LUSC 161292761 + 161292741 161292781 41 GTGAAGACTGATATCTTCGTCACCAGTTTCGGACCCGTTTC GTGAAGACTGATATCTTCGTCACCTGTTTCGGACCCGTTTC < 41bp 0.798455279807001 0.491073791177009 0.08650184 0.18782094 prediction 0.596910559614002 Functional Loss - GABRA1 ENSG00000022355 CDS Human protein_coding chr5:161292761 chr5:161292765 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_54808 0 0 0 0 2 GABRA1 chr5:161292794 5'GT 161292794 Upstream 30bp
chr10 38654474 38654474 1 + G T COAD 38654472 + 38654452 38654492 41 AGCCTCGAGGACTTCCAGCACAGCAAAGGCAAGGAACCCTA AGCCTCGAGGACTTCCAGCACATCAAAGGCAAGGAACCCTA < 41bp 0.803659208900791 0.505223022270855 0.038573593 0.038059384 prediction 0.596872373259873 Functional Loss - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38654472 chr10:38654474 . . 0 23 hm5C_associated_SNPs_54809 0 0 0 0 1 HSD17B7P2 chr10:38654557 5'GT 38654557 Upstream 84bp
chr7 29918696 29918696 1 + G T UCEC 29918693 + 29918673 29918713 41 GCGCGAGCACACCTCCCACCCTGGGAGATCTGTTTGCTGGT GCGCGAGCACACCTCCCACCCTGTGAGATCTGTTTGCTGGT < 41bp 0.798436065027503 0.407967840006218 0.2756102 0.100997955 prediction 0.596872130055006 Functional Loss - WIPF3 ENSG00000122574 CDS Human protein_coding chr7:29918693 chr7:29918696 stopgain 0.950 1 24 hm5C_associated_SNPs_54810 0 0 0 0 2 WIPF3 chr7:29918625 3'AG 29918625 Downstream 72bp
chr7 29918696 29918696 1 + G T UCEC 29918693 + 29918673 29918713 41 GCGCGAGCACACCTCCCACCCTGGGAGATCTGTTTGCTGGT GCGCGAGCACACCTCCCACCCTGTGAGATCTGTTTGCTGGT < 41bp 0.798436065027503 0.407967840006218 0.2756102 0.100997955 prediction 0.596872130055006 Functional Loss - WIPF3 ENSG00000122574 CDS Human protein_coding chr7:29918693 chr7:29918696 stopgain 0.950 1 24 hm5C_associated_SNPs_54810 0 0 0 0 2 WIPF3 chr7:29918756 5'GT 29918756 Upstream 61bp
chr10 94835010 94835010 1 + G T LUAD 94835007 + 94834987 94835027 41 GCGGGCCAGGGCTGCAAAGACGCGCTGCAGCTGTTGATCGA GCGGGCCAGGGCTGCAAAGACGCTCTGCAGCTGTTGATCGA < 41bp 0.889836960684568 0.591416724878647 0.37343323 0.12802264 prediction 0.596840471611843 Functional Loss - CYP26A1 ENSG00000095596 CDS Human protein_coding chr10:94835007 chr10:94835010 synonymous SNV . 0 24 hm5C_associated_SNPs_54813 0 0 0 0 1 CYP26A1 chr10:94835064 5'GT 94835064 Upstream 55bp
chr7 66236966 66236966 1 + G T STAD 66236964 + 66236944 66236984 41 AAGAAAGGATGTGGTTACTACGGCAACCCTGCCTGGCAGGG AAGAAAGGATGTGGTTACTACGTCAACCCTGCCTGGCAGGG < 41bp 0.831582020887176 0.533170342587523 0.28696918 0.08548823 prediction 0.596823356599306 Functional Loss - RABGEF1 ENSG00000154710;ENSG00000243335 CDS Human other chr7:66236964 chr7:66236966 nonsynonymous SNV 0.988 4 23 hm5C_associated_SNPs_54814 0 0 1 0 1 RABGEF1 chr7:66237065 5'GT 66237065 Upstream 100bp
chr16 72133735 72133735 1 + G T LUAD 72133733 + 72133713 72133753 41 TGAGGAGGCGGGAGCAGCACCTGCATAAACAGAAGCAGAAG TGAGGAGGCGGGAGCAGCACCTTCATAAACAGAAGCAGAAG < 41bp 0.816103302444675 0.517703993693107 0.61335397 0.37065718 prediction 0.596798617503137 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72133733 chr16:72133735 synonymous SNV . 0 23 hm5C_associated_SNPs_54816 0 0 1 2 1 DHX38 chr16:72133786 5'GT 72133786 Upstream 52bp
chr2 219267782 219267782 1 + G T LUAD 219267779 + 219267759 219267799 41 TCTACGTGTTGAAGCGTCCTCACGTGGATGAGTTCCTGCAG TCTACGTGTTGAAGCGTCCTCACTTGGATGAGTTCCTGCAG < 41bp 0.79839429088988 0.41993445591103 0.46519986 0.047591984 prediction 0.596788581779761 Functional Loss - CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219267779 chr2:219267782 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_54817 0 0 1 0 2 CTDSP1 chr2:219267758 3'AG 219267758 Downstream 25bp
chr2 219267782 219267782 1 + G T LUAD 219267779 + 219267759 219267799 41 TCTACGTGTTGAAGCGTCCTCACGTGGATGAGTTCCTGCAG TCTACGTGTTGAAGCGTCCTCACTTGGATGAGTTCCTGCAG < 41bp 0.79839429088988 0.41993445591103 0.46519986 0.047591984 prediction 0.596788581779761 Functional Loss - CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219267779 chr2:219267782 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_54817 0 0 1 0 2 CTDSP1 chr2:219267850 5'GT 219267850 Upstream 69bp
chr10 96602692 96602692 1 + G T BLCA 96602689 + 96602669 96602709 41 CCTACACAGATGCTGTGGTGCACGAGGTCCAGAGATACATC CCTACACAGATGCTGTGGTGCACTAGGTCCAGAGATACATC < 41bp 0.886187915028581 0.587867027701622 0.27752984 0.14201504 prediction 0.596641774653919 Functional Loss - CYP2C19 ENSG00000165841 CDS Human protein_coding chr10:96602689 chr10:96602692 stopgain 0.023 0 24 hm5C_associated_SNPs_54824 0 0 0 0 2 CYP2C19 chr10:96602594 3'AG 96602594 Downstream 99bp
chr10 96602692 96602692 1 + G T BLCA 96602689 + 96602669 96602709 41 CCTACACAGATGCTGTGGTGCACGAGGTCCAGAGATACATC CCTACACAGATGCTGTGGTGCACTAGGTCCAGAGATACATC < 41bp 0.886187915028581 0.587867027701622 0.27752984 0.14201504 prediction 0.596641774653919 Functional Loss - CYP2C19 ENSG00000165841 CDS Human protein_coding chr10:96602689 chr10:96602692 stopgain 0.023 0 24 hm5C_associated_SNPs_54824 0 0 0 0 2 CYP2C19 chr10:96602781 5'GT 96602781 Upstream 90bp
chr3 126676268 126676268 1 + G T rs201542486 126676265 + 126676245 126676285 41 CTTGTCTTCTGCAGGCCCCGCAGGGTGGAGCCCGTCTGCTC CTTGTCTTCTGCAGGCCCCGCAGTGTGGAGCCCGTCTGCTC < 41bp 0.88749122868425 0.58917796224439 0.94339234 0.77658784 prediction 0.59662653287972 Functional Loss - CHCHD6 ENSG00000159685 CDS Human protein_coding chr3:126676265 chr3:126676268 nonsynonymous SNV 0.512 0 24 hm5C_associated_SNPs_54825 0 0 0 0 1 CHCHD6 chr3:126676259 3'AG 126676259 Downstream 10bp
chr2 239002529 239002529 1 + G C BLCA 239002528 + 239002508 239002548 41 GAGCTGGTGACCCAGAACTGCGAGGCTTATGAGGCCCACAT GAGCTGGTGACCCAGAACTGCCAGGCTTATGAGGCCCACAT < 41bp 0.800793282125806 0.502491367616403 0.8924271 0.6678459 prediction 0.596603829018805 Functional Loss - SCLY ENSG00000132330 CDS Human protein_coding chr2:239002528 chr2:239002529 nonsynonymous SNV 0.100 0 22 hm5C_associated_SNPs_54828 0 0 1 0 2 SCLY chr2:239002502 3'AG 239002502 Downstream 28bp
chr2 239002529 239002529 1 + G C BLCA 239002528 + 239002508 239002548 41 GAGCTGGTGACCCAGAACTGCGAGGCTTATGAGGCCCACAT GAGCTGGTGACCCAGAACTGCCAGGCTTATGAGGCCCACAT < 41bp 0.800793282125806 0.502491367616403 0.8924271 0.6678459 prediction 0.596603829018805 Functional Loss - SCLY ENSG00000132330 CDS Human protein_coding chr2:239002528 chr2:239002529 nonsynonymous SNV 0.100 0 22 hm5C_associated_SNPs_54828 0 0 1 0 2 SCLY chr2:239002585 5'GT 239002585 Upstream 57bp
chrX 46322728 46322728 1 + G T UCEC 46322726 + 46322706 46322746 41 GACCCCGGTACGGACCTGTGCAGGTGAGGACAGGCCAGGTG GACCCCGGTACGGACCTGTGCATGTGAGGACAGGCCAGGTG < 41bp 0.847729579377312 0.549435604995331 0.8169615 0.3111633 prediction 0.596587948763963 Functional Loss - KRBOX4 ENSG00000147121 CDS Human protein_coding chrX:46322726 chrX:46322728 stopgain 0.191 2 23 hm5C_associated_SNPs_54829 0 0 1 0 2 KRBOX4 chrX:46322728 5'GT 46322728 Upstream 1bp
chrX 46322728 46322728 1 + G T UCEC 46322726 + 46322706 46322746 41 GACCCCGGTACGGACCTGTGCAGGTGAGGACAGGCCAGGTG GACCCCGGTACGGACCTGTGCATGTGAGGACAGGCCAGGTG < 41bp 0.847729579377312 0.549435604995331 0.8169615 0.3111633 prediction 0.596587948763963 Functional Loss - KRBOX4 ENSG00000147121 CDS Human protein_coding chrX:46322726 chrX:46322728 stopgain 0.191 2 23 hm5C_associated_SNPs_54829 0 0 1 0 2 KRBOX4 chrX:46322743 5'GT 46322743 Upstream 16bp
chr19 35501012 35501012 1 + G T KIRC 35501010 + 35500990 35501030 41 TCTCAGATTACTCCTGCGCCCTGCAGCGTGAGATCCTGCTC TCTCAGATTACTCCTGCGCCCTTCAGCGTGAGATCCTGCTC < 41bp 0.83187493122247 0.533582779628818 0.116149336 0.058220953 prediction 0.596584303187306 Functional Loss - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35501010 chr19:35501012 synonymous SNV . 0 23 hm5C_associated_SNPs_54830 0 0 1 0 2 GRAMD1A chr19:35500996 3'AG 35500996 Downstream 17bp
chr19 35501012 35501012 1 + G T KIRC 35501010 + 35500990 35501030 41 TCTCAGATTACTCCTGCGCCCTGCAGCGTGAGATCCTGCTC TCTCAGATTACTCCTGCGCCCTTCAGCGTGAGATCCTGCTC < 41bp 0.83187493122247 0.533582779628818 0.116149336 0.058220953 prediction 0.596584303187306 Functional Loss - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35501010 chr19:35501012 synonymous SNV . 0 23 hm5C_associated_SNPs_54830 0 0 1 0 2 GRAMD1A chr19:35501099 5'GT 35501099 Upstream 88bp
chr1 110030257 110030257 1 + G T UCEC 110030254 + 110030234 110030274 41 AGCCAGCCAGGGGGCCTCACCAAGGACTCCCCTGGAAAACC AGCCAGCCAGGGGGCCTCACCAATGACTCCCCTGGAAAACC < 41bp 0.798282091551572 0.418942069098639 0.9039496 0.34073508 prediction 0.596564183103145 Functional Loss - ATXN7L2 ENSG00000162650 CDS Human protein_coding chr1:110030254 chr1:110030257 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_54831 0 0 0 0 1 ATXN7L2 chr1:110030236 3'AG 110030236 Downstream 22bp
chr2 27121538 27121538 1 + G T LUAD 27121536 + 27121516 27121556 41 TGATTGATGCCACAGGAAAACTGGTGATCCCTGGTGGCATC TGATTGATGCCACAGGAAAACTTGTGATCCCTGGTGGCATC < 41bp 0.841511999055266 0.543231133282477 0.7170399 0.18741968 prediction 0.596561731545578 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27121536 chr2:27121538 synonymous SNV . 0 23 hm5C_associated_SNPs_54832 0 0 1 0 1 DPYSL5 chr2:27121628 5'GT 27121628 Upstream 91bp
chr10 118202639 118202639 1 + A T LUSC 118202635 + 118202615 118202655 41 ACAGACAAGATCACCCGTATCAACATAGCTGGATGGAAAAC ACAGACAAGATCACCCGTATCAACTTAGCTGGATGGAAAAC < 41bp 0.798277740395826 0.479815066931982 0.06778306 0.03999716 prediction 0.596555480791651 Functional Loss - PNLIPRP3 ENSG00000203837 CDS Human protein_coding chr10:118202635 chr10:118202639 nonsynonymous SNV 0.003 3 25 hm5C_associated_SNPs_54833 0 0 0 0 2 PNLIPRP3 chr10:118202567 3'AG 118202567 Downstream 73bp
chr10 118202639 118202639 1 + A T LUSC 118202635 + 118202615 118202655 41 ACAGACAAGATCACCCGTATCAACATAGCTGGATGGAAAAC ACAGACAAGATCACCCGTATCAACTTAGCTGGATGGAAAAC < 41bp 0.798277740395826 0.479815066931982 0.06778306 0.03999716 prediction 0.596555480791651 Functional Loss - PNLIPRP3 ENSG00000203837 CDS Human protein_coding chr10:118202635 chr10:118202639 nonsynonymous SNV 0.003 3 25 hm5C_associated_SNPs_54833 0 0 0 0 2 PNLIPRP3 chr10:118202686 5'GT 118202686 Upstream 48bp
chr20 1218709 1218709 1 + G T UCEC 1218707 + 1218687 1218727 41 GGGGAGGAATCTGAAATTCTCAGAAGACATAGCTTCTTTGA GGGGAGGAATCTGAAATTCTCATAAGACATAGCTTCTTTGA < 41bp 0.814483428233951 0.516213618243047 0.8783812 0.12545589 prediction 0.596539619981808 Functional Loss - RAD21L1 ENSG00000244588 CDS Human protein_coding chr20:1218707 chr20:1218709 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_54834 0 0 0 0 1 RAD21L1 chr20:1218688 3'AG 1218688 Downstream 22bp
chr11 65735028 65735028 1 + G T rs538739713 65735025 + 65735005 65735045 41 GCCCCTGCCGTCGGACGACACCCGAGTGGAGAACATGGACA GCCCCTGCCGTCGGACGACACCCTAGTGGAGAACATGGACA < 41bp 0.798259962386807 0.416010361176687 0.2452366 0.0788663 prediction 0.596519924773614 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65735025 chr11:65735028 nonsynonymous SNV 0.855 1 24 hm5C_associated_SNPs_54836 0 0 1 0 1 SART1 chr11:65734942 3'AG 65734942 Downstream 87bp
chr9 131482026 131482026 1 + G T LUSC 131482023 + 131482003 131482043 41 ACCCCGGAGTTCCTGGCTCCCGAGGTGCTGACCCAGGAGGC ACCCCGGAGTTCCTGGCTCCCGATGTGCTGACCCAGGAGGC < 41bp 0.891367244108233 0.593107449075094 0.9259053 0.58707094 prediction 0.596519590066279 Functional Loss - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131482023 chr9:131482026 nonsynonymous SNV 0.402 3 24 hm5C_associated_SNPs_54837 0 0 1 0 2 PKN3 chr9:131481965 3'AG 131481965 Downstream 62bp
chr9 131482026 131482026 1 + G T LUSC 131482023 + 131482003 131482043 41 ACCCCGGAGTTCCTGGCTCCCGAGGTGCTGACCCAGGAGGC ACCCCGGAGTTCCTGGCTCCCGATGTGCTGACCCAGGAGGC < 41bp 0.891367244108233 0.593107449075094 0.9259053 0.58707094 prediction 0.596519590066279 Functional Loss - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131482023 chr9:131482026 nonsynonymous SNV 0.402 3 24 hm5C_associated_SNPs_54837 0 0 1 0 2 PKN3 chr9:131482107 5'GT 131482107 Upstream 82bp
chr20 55100024 55100024 1 + G T UCEC 55100021 + 55100001 55100041 41 AGAATCTACCAGAGCACACCCAAGGCTGGCTTGGGAGCAAA AGAATCTACCAGAGCACACCCAATGCTGGCTTGGGAGCAAA < 41bp 0.798258384224033 0.413868697024931 0.8625555 0.5299816 prediction 0.596516768448066 Functional Loss - FAM209A ENSG00000124103 CDS Human protein_coding chr20:55100021 chr20:55100024 nonsynonymous SNV 0.130 3 24 hm5C_associated_SNPs_54838 0 0 1 0 1 FAM209A chr20:55100113 5'GT 55100113 Upstream 90bp
chr1 156040024 156040024 1 + G T LUAD 156040022 + 156040002 156040042 41 CCATCACTCTGGGCAGTGCCCAGGCTGGACAGGAGCCTGGC CCATCACTCTGGGCAGTGCCCATGCTGGACAGGAGCCTGGC < 41bp 0.845690911217111 0.547443599426657 0.91094255 0.46327618 prediction 0.596494623580909 Functional Loss - RAB25 ENSG00000132698 CDS Human protein_coding chr1:156040022 chr1:156040024 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_54840 0 0 0 0 1 RAB25 chr1:156039951 3'AG 156039951 Downstream 74bp
chr11 47350675 47350675 1 + A C rs552599871 47350671 + 47350651 47350691 41 CATAGCAGTGAGGAAGATCTCAGAACCCCGCCCCGGCCTGT CATAGCAGTGAGGAAGATCTCAGACCCCCGCCCCGGCCTGT < 41bp 0.798232179229637 0.439043489810488 0.8811135 0.87324286 prediction 0.596464358459273 Functional Loss - MADD ENSG00000110514 CDS Human protein_coding chr11:47350671 chr11:47350675 nonsynonymous SNV 0.986 1 25 hm5C_associated_SNPs_54843 0 0 1 0 1 MADD chr11:47350597 3'AG 47350597 Downstream 79bp
chr3 42572402 42572402 1 + G T LUSC 42572399 + 42572379 42572419 41 TTCTCTGAGCGGAAGTACTTCTGGGGGTACATACTCATCGG TTCTCTGAGCGGAAGTACTTCTGTGGGTACATACTCATCGG < 41bp 0.883201570226718 0.584972774271555 0.9204954 0.72456056 prediction 0.596457591910326 Functional Loss - VIPR1 ENSG00000114812 CDS Human protein_coding chr3:42572399 chr3:42572402 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_54845 0 0 0 0 2 VIPR1 chr3:42572404 5'GT 42572404 Upstream 3bp
chr3 42572402 42572402 1 + G T LUSC 42572399 + 42572379 42572419 41 TTCTCTGAGCGGAAGTACTTCTGGGGGTACATACTCATCGG TTCTCTGAGCGGAAGTACTTCTGTGGGTACATACTCATCGG < 41bp 0.883201570226718 0.584972774271555 0.9204954 0.72456056 prediction 0.596457591910326 Functional Loss - VIPR1 ENSG00000114812 CDS Human protein_coding chr3:42572399 chr3:42572402 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_54845 0 0 0 0 2 VIPR1 chr3:42572424 5'GT 42572424 Upstream 23bp
chr1 151508751 151508751 1 + A T LUSC 151508747 + 151508727 151508767 41 TGCAGTCTACCAATCGAAAACTGGAGCGGAAAGTTAAAGAA TGCAGTCTACCAATCGAAAACTGGTGCGGAAAGTTAAAGAA < 41bp 0.818434913362684 0.520216691999959 0.24822798 0.156625 prediction 0.596436442725451 Functional Loss - CGN ENSG00000143375 CDS Human protein_coding chr1:151508747 chr1:151508751 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_54848 0 0 0 0 2 CGN chr1:151508713 3'AG 151508713 Downstream 39bp
chr1 151508751 151508751 1 + A T LUSC 151508747 + 151508727 151508767 41 TGCAGTCTACCAATCGAAAACTGGAGCGGAAAGTTAAAGAA TGCAGTCTACCAATCGAAAACTGGTGCGGAAAGTTAAAGAA < 41bp 0.818434913362684 0.520216691999959 0.24822798 0.156625 prediction 0.596436442725451 Functional Loss - CGN ENSG00000143375 CDS Human protein_coding chr1:151508747 chr1:151508751 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_54848 0 0 0 0 2 CGN chr1:151508821 5'GT 151508821 Upstream 71bp
chr17 73820437 73820437 1 + G T SARC 73820435 + 73820415 73820455 41 CACGCTGCGCTGTGTGAGCTCTGCGCTGAGGGCAGCGAGTG CACGCTGCGCTGTGTGAGCTCTTCGCTGAGGGCAGCGAGTG < 41bp 0.823872138118659 0.52565420460967 0.23029697 0.26490068 prediction 0.596435867017979 Functional Loss - UNK ENSG00000132478 CDS Human protein_coding chr17:73820435 chr17:73820437 nonsynonymous SNV 0.976 3 23 hm5C_associated_SNPs_54849 0 0 1 0 1 UNK chr17:73820343 3'AG 73820343 Downstream 95bp
chr17 19555013 19555013 1 + G T STAD 19555010 + 19554990 19555030 41 CCTATATTCAGCCACAGCCTCTGGGAGTGGTGCTGATAATC CCTATATTCAGCCACAGCCTCTGTGAGTGGTGCTGATAATC < 41bp 0.798217484957562 0.413689267692238 0.6787255 0.22889441 prediction 0.596434969915123 Functional Loss - ALDH3A2 ENSG00000072210 CDS Human protein_coding chr17:19555010 chr17:19555013 stopgain 0.998 1 24 hm5C_associated_SNPs_54850 0 0 1 0 1 ALDH3A2 chr17:19555091 5'GT 19555091 Upstream 79bp
chr19 7712288 7712288 1 + G T LUAD 7712285 + 7712265 7712305 41 AACAAGGCTGGCATAGAAGCCCGGGCGGGCCCCCGGCTCAT AACAAGGCTGGCATAGAAGCCCGTGCGGGCCCCCGGCTCAT < 41bp 0.798204812635164 0.447877337846499 0.85960937 0.38293892 prediction 0.596409625270327 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7712285 chr19:7712288 synonymous SNV . 0 24 hm5C_associated_SNPs_54852 0 0 1 0 1 STXBP2 chr19:7712240 3'AG 7712240 Downstream 49bp
chr1 1117193 1117193 1 + G T BLCA 1117191 + 1117171 1117211 41 GCCCAGGATACCTCAGGCCACAGAGGTAGACTCAGCCCAGC GCCCAGGATACCTCAGGCCACATAGGTAGACTCAGCCCAGC < 41bp 0.798202602943044 0.468543021683321 0.50103 0.07782033 prediction 0.596405205886087 Functional Loss - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1117191 chr1:1117193 nonsynonymous SNV 0.690 0 23 hm5C_associated_SNPs_54853 0 0 0 0 2 TTLL10 chr1:1117121 3'AG 1117121 Downstream 73bp
chr1 1117193 1117193 1 + G T BLCA 1117191 + 1117171 1117211 41 GCCCAGGATACCTCAGGCCACAGAGGTAGACTCAGCCCAGC GCCCAGGATACCTCAGGCCACATAGGTAGACTCAGCCCAGC < 41bp 0.798202602943044 0.468543021683321 0.50103 0.07782033 prediction 0.596405205886087 Functional Loss - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1117191 chr1:1117193 nonsynonymous SNV 0.690 0 23 hm5C_associated_SNPs_54853 0 0 0 0 2 TTLL10 chr1:1117195 5'GT 1117195 Upstream 3bp
chr16 23200781 23200781 1 + A C UCEC 23200777 + 23200757 23200797 41 TGTATGGCTTTCCAGAGTCCCGGAAGCGCCGAGAGGCGGAG TGTATGGCTTTCCAGAGTCCCGGACGCGCCGAGAGGCGGAG < 41bp 0.798196415421074 0.396611881869349 0.85089576 0.8624424 prediction 0.596392830842148 Functional Loss - SCNN1G ENSG00000166828 CDS Human protein_coding chr16:23200777 chr16:23200781 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_54855 0 0 0 0 1 SCNN1G chr16:23200692 3'AG 23200692 Downstream 90bp
chr5 131607056 131607056 1 + G T UCEC 131607053 + 131607033 131607073 41 TGCAGAGTCGACCTGGGCTCCGAGGTGTACAGGATGCTGCG TGCAGAGTCGACCTGGGCTCCGATGTGTACAGGATGCTGCG < 41bp 0.888287864052337 0.590093462658719 0.9095 0.379481 prediction 0.596388802787234 Functional Loss - PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131607053 chr5:131607056 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_54856 0 0 1 0 1 PDLIM4 chr5:131606996 3'AG 131606996 Downstream 61bp
chr17 72345452 72345452 1 + G T LUAD 72345449 + 72345429 72345469 41 AGACTGGGCGGGGCCAGGCCCGGGGCCGGCAGGATCGGGGT AGACTGGGCGGGGCCAGGCCCGGTGCCGGCAGGATCGGGGT < 41bp 0.901764096797113 0.603579745992724 0.93781227 0.75926864 prediction 0.596368701608778 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72345449 chr17:72345452 nonsynonymous SNV 0.930 1 24 hm5C_associated_SNPs_54858 0 0 0 0 1 KIF19 chr17:72345488 5'GT 72345488 Upstream 37bp
chr2 131976406 131976406 1 + A T LUSC 131976402 + 131976382 131976422 41 GTGGAGAAGATCTGGACAAGCTCCACAGAGCTGCCTGGTGG GTGGAGAAGATCTGGACAAGCTCCTCAGAGCTGCCTGGTGG < 41bp 0.800600299365157 0.502424601538048 0.89176023 0.099654585 prediction 0.596351395654216 Functional Loss - POTEE ENSG00000188219 CDS Human protein_coding chr2:131976402 chr2:131976406 nonsynonymous SNV 0.811 3 25 hm5C_associated_SNPs_54859 0 0 1 0 1 POTEE chr2:131976496 5'GT 131976496 Upstream 91bp
chr17 45299068 45299068 1 + G T LUSC 45299065 + 45299045 45299085 41 AAGAGATGAATGTCAAGATGCTGGACTTTGAGACGTTCTTG AAGAGATGAATGTCAAGATGCTGTACTTTGAGACGTTCTTG < 41bp 0.798171205021638 0.425089100399867 0.3825528 0.2493538 prediction 0.596342410043275 Functional Loss - MYL4 ENSG00000198336 CDS Human protein_coding chr17:45299065 chr17:45299068 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_54861 0 0 0 0 1 MYL4 chr17:45299048 3'AG 45299048 Downstream 21bp
chr3 44283864 44283864 1 + G T UCEC 44283862 + 44283842 44283882 41 CCTAGAAGCAGCAAAGGAGGCTGAACTCCCCTTGCAAACGG CCTAGAAGCAGCAAAGGAGGCTTAACTCCCCTTGCAAACGG < 41bp 0.829962116212834 0.531794947785068 0.19850087 0.19057313 prediction 0.596334336855531 Functional Loss - TOPAZ1 ENSG00000173769 CDS Human protein_coding chr3:44283862 chr3:44283864 stopgain 0.003 0 23 hm5C_associated_SNPs_54862 0 0 0 0 1 TOPAZ1 chr3:44283891 5'GT 44283891 Upstream 28bp
chr17 38249335 38249335 1 + G T BLCA 38249332 + 38249312 38249352 41 GCGGCAGAAGGCCGGCCGGGCGGGTCACTGGGCGTCCACCC GCGGCAGAAGGCCGGCCGGGCGGTTCACTGGGCGTCCACCC < 41bp 0.798166693402514 0.419199671780221 0.9084925 0.87165815 prediction 0.596333386805027 Functional Loss - THRA ENSG00000126351 CDS Human protein_coding chr17:38249332 chr17:38249335 synonymous SNV . 0 24 hm5C_associated_SNPs_54864 0 0 1 0 1 THRA chr17:38249273 3'AG 38249273 Downstream 63bp
chr2 204820447 204820447 1 + G T UCEC 204820445 + 204820425 204820465 41 GCAAATATCCTGACATTGTCCAGCAATTTAAAATGCAGTTG GCAAATATCCTGACATTGTCCATCAATTTAAAATGCAGTTG < 41bp 0.821966536534689 0.523816632525568 0.1543907 0.09395945 prediction 0.596299808018242 Functional Loss - ICOS ENSG00000163600 CDS Human protein_coding chr2:204820445 chr2:204820447 nonsynonymous SNV 0.940 0 23 hm5C_associated_SNPs_54868 0 0 0 0 1 ICOS chr2:204820359 3'AG 204820359 Downstream 89bp
chr20 47711367 47711367 1 + G T LUSC 47711364 + 47711344 47711384 41 TATTGACATAGAAGATACACCAGGATATCAGACTGCCTTCT TATTGACATAGAAGATACACCAGTATATCAGACTGCCTTCT < 41bp 0.798114563795273 0.440634825449125 0.3756294 0.030946046 prediction 0.596229127590545 Functional Loss - CSE1L ENSG00000124207 CDS Human protein_coding chr20:47711364 chr20:47711367 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_54869 0 0 1 0 1 CSE1L chr20:47711269 3'AG 47711269 Downstream 99bp
chr10 37418836 37418836 1 + G T LUAD 37418833 + 37418813 37418853 41 TCTCGTAGGACTGCTCTACACTGGGCCTGTGTCAATGGCCA TCTCGTAGGACTGCTCTACACTGTGCCTGTGTCAATGGCCA < 41bp 0.798102801161371 0.44461348992265 0.24973544 0.107050925 prediction 0.596205602322741 Functional Loss - ANKRD30A ENSG00000148513 CDS Human protein_coding chr10:37418833 chr10:37418836 nonsynonymous SNV 0.212 3 24 hm5C_associated_SNPs_54872 0 0 0 0 2 ANKRD30A chr10:37418821 3'AG 37418821 Downstream 16bp
chr10 37418836 37418836 1 + G T LUAD 37418833 + 37418813 37418853 41 TCTCGTAGGACTGCTCTACACTGGGCCTGTGTCAATGGCCA TCTCGTAGGACTGCTCTACACTGTGCCTGTGTCAATGGCCA < 41bp 0.798102801161371 0.44461348992265 0.24973544 0.107050925 prediction 0.596205602322741 Functional Loss - ANKRD30A ENSG00000148513 CDS Human protein_coding chr10:37418833 chr10:37418836 nonsynonymous SNV 0.212 3 24 hm5C_associated_SNPs_54872 0 0 0 0 2 ANKRD30A chr10:37418935 5'GT 37418935 Upstream 100bp
chr14 78374163 78374163 1 + G T LUAD 78374160 + 78374140 78374180 41 TCCCAGGTCCCCCGAATCCACTGGGACCTGTCCACGGAGCG TCCCAGGTCCCCCGAATCCACTGTGACCTGTCCACGGAGCG < 41bp 0.798102240971424 0.420027930631903 0.59258443 0.047825217 prediction 0.596204481942849 Functional Loss - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78374160 chr14:78374163 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_54873 0 0 1 0 2 ADCK1 chr14:78374146 3'AG 78374146 Downstream 18bp
chr14 78374163 78374163 1 + G T LUAD 78374160 + 78374140 78374180 41 TCCCAGGTCCCCCGAATCCACTGGGACCTGTCCACGGAGCG TCCCAGGTCCCCCGAATCCACTGTGACCTGTCCACGGAGCG < 41bp 0.798102240971424 0.420027930631903 0.59258443 0.047825217 prediction 0.596204481942849 Functional Loss - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78374160 chr14:78374163 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_54873 0 0 1 0 2 ADCK1 chr14:78374262 5'GT 78374262 Upstream 100bp
chr22 44322827 44322827 1 + A T LUAD 44322823 + 44322803 44322843 41 TCCTGTCCCCAGAGCAGACTCTGCAGGTCCTCTCAGATCTT TCCTGTCCCCAGAGCAGACTCTGCTGGTCCTCTCAGATCTT < 41bp 0.798087123569516 0.488788774419485 0.2369586 0.048490703 prediction 0.596174247139033 Functional Loss - PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44322823 chr22:44322827 nonsynonymous SNV 0.011 0 25 hm5C_associated_SNPs_54875 0 0 1 0 2 PNPLA3 chr22:44322815 3'AG 44322815 Downstream 13bp
chr22 44322827 44322827 1 + A T LUAD 44322823 + 44322803 44322843 41 TCCTGTCCCCAGAGCAGACTCTGCAGGTCCTCTCAGATCTT TCCTGTCCCCAGAGCAGACTCTGCTGGTCCTCTCAGATCTT < 41bp 0.798087123569516 0.488788774419485 0.2369586 0.048490703 prediction 0.596174247139033 Functional Loss - PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44322823 chr22:44322827 nonsynonymous SNV 0.011 0 25 hm5C_associated_SNPs_54875 0 0 1 0 2 PNPLA3 chr22:44322820 3'AG 44322820 Downstream 8bp
chr7 97362026 97362026 1 + G T LUAD 97362023 + 97362003 97362043 41 GATCTGAATTACTGGTCCGACTGGTACGACAGCGACCAGAT GATCTGAATTACTGGTCCGACTGTTACGACAGCGACCAGAT < 41bp 0.79808588100959 0.440145978813372 0.14721015 0.034819305 prediction 0.59617176201918 Functional Loss - TAC1 ENSG00000006128 CDS Human protein_coding chr7:97362023 chr7:97362026 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54876 0 0 0 0 1 TAC1 chr7:97362047 5'GT 97362047 Upstream 22bp
chr1 110173387 110173387 1 + G T SARC 110173385 + 110173365 110173405 41 ATGTGTGAGCTGGCCCGCAACAGCGTGCTCATGAGCGGCTT ATGTGTGAGCTGGCCCGCAACATCGTGCTCATGAGCGGCTT < 41bp 0.798084276090531 0.477579485977857 0.40762204 0.21167526 prediction 0.596168552181061 Functional Loss - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110173385 chr1:110173387 nonsynonymous SNV 0.995 5 23 hm5C_associated_SNPs_54877 0 0 1 0 2 AMPD2 chr1:110173305 3'AG 110173305 Downstream 83bp
chr1 110173387 110173387 1 + G T SARC 110173385 + 110173365 110173405 41 ATGTGTGAGCTGGCCCGCAACAGCGTGCTCATGAGCGGCTT ATGTGTGAGCTGGCCCGCAACATCGTGCTCATGAGCGGCTT < 41bp 0.798084276090531 0.477579485977857 0.40762204 0.21167526 prediction 0.596168552181061 Functional Loss - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110173385 chr1:110173387 nonsynonymous SNV 0.995 5 23 hm5C_associated_SNPs_54877 0 0 1 0 2 AMPD2 chr1:110173415 5'GT 110173415 Upstream 29bp
chr14 77722899 77722899 1 + G T UCEC 77722896 + 77722876 77722916 41 TGGCCACCGTGCTGCAAGAACCGGAGTTGAATCTGACCCCC TGGCCACCGTGCTGCAAGAACCGTAGTTGAATCTGACCCCC < 41bp 0.798078747748774 0.423980006212615 0.910138 0.39308888 prediction 0.596157495497548 Functional Loss - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77722896 chr14:77722899 stopgain 0.303 1 24 hm5C_associated_SNPs_54878 0 0 0 0 1 TMEM63C chr14:77722869 3'AG 77722869 Downstream 31bp
chr6 44274725 44274725 1 - T A rs147091256 44274729 - 44274709 44274749 41 CTGCGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGC CTGCGTCGAGCTGTGCGTTTCTCCTTGGAGATCTTAAAGGC < 41bp 0.86102466825007 0.562948126784444 0.9747491 0.30820045 prediction 0.596153082931252 Functional Loss - AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human protein_coding chr6:44274729 chr6:44274725 nonsynonymous SNV 0.095 0 25 hm5C_associated_SNPs_54879 2 0 1 0 2 AARS2 chr6:44274660 5'GT 44274660 Upstream 66bp
chr6 44274725 44274725 1 - T A rs147091256 44274729 - 44274709 44274749 41 CTGCGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGC CTGCGTCGAGCTGTGCGTTTCTCCTTGGAGATCTTAAAGGC < 41bp 0.86102466825007 0.562948126784444 0.9747491 0.30820045 prediction 0.596153082931252 Functional Loss - AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human other chr6:44274729 chr6:44274725 nonsynonymous SNV 0.095 0 25 hm5C_associated_SNPs_54879 2 0 1 0 2 AARS2 chr6:44274768 3'AG 44274768 Downstream 44bp
chr17 38249318 38249318 1 + G T UCEC 38249316 + 38249296 38249336 41 TCTGTACAAGGGGGCAGCGGCAGAAGGCCGGCCGGGCGGGT TCTGTACAAGGGGGCAGCGGCATAAGGCCGGCCGGGCGGGT < 41bp 0.836382694913753 0.538317720146225 0.9113569 0.8875498 prediction 0.596129949535057 Functional Loss - THRA ENSG00000126351 CDS Human protein_coding chr17:38249316 chr17:38249318 stopgain 1.000 0 23 hm5C_associated_SNPs_54880 0 0 0 0 1 THRA chr17:38249273 3'AG 38249273 Downstream 46bp
chr9 108210513 108210513 1 + G T UCEC 108210511 + 108210491 108210531 41 AGCCACTCGCCATGGACTCCCAGAAAGTAAGCGGGGGAGGG AGCCACTCGCCATGGACTCCCATAAAGTAAGCGGGGGAGGG < 41bp 0.835219587200022 0.537176533905766 0.4445806 0.2617356 prediction 0.596086106588512 Functional Loss - FSD1L ENSG00000106701 CDS Human protein_coding chr9:108210511 chr9:108210513 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_54882 0 0 1 0 1 FSD1L chr9:108210516 5'GT 108210516 Upstream 4bp
chr13 103518207 103518207 1 + G T UCEC 103518205 + 103518185 103518225 41 ACGACGTGGATGGTGAGCCACAGGAAGCTGAGAAAGATGCG ACGACGTGGATGGTGAGCCACATGAAGCTGAGAAAGATGCG < 41bp 0.840913702418558 0.542902098186016 0.4122763 0.16599521 prediction 0.596023208465084 Functional Loss - BIVM-ERCC5;ERCC5 ENSG00000134899;ENSG00000270181 CDS Human other chr13:103518205 chr13:103518207 nonsynonymous SNV 0.761 0 23 hm5C_associated_SNPs_54884 0 0 1 0 1 BIVM-ERCC5;ERCC5 chr13:103518261 5'GT 103518261 Upstream 55bp
chr6 43227005 43227005 1 + A C LUSC 43227001 + 43226981 43227021 41 AACAAACTCCGGATCAACATCGGCAAAGTAACTGCCGCCAG AACAAACTCCGGATCAACATCGGCCAAGTAACTGCCGCCAG < 41bp 0.798008782405583 0.391528150557877 0.863444 0.81974554 prediction 0.596017564811167 Functional Loss - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43227001 chr6:43227005 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_54885 0 0 0 0 1 TTBK1 chr6:43227007 5'GT 43227007 Upstream 3bp
chr2 97017660 97017660 1 + G T UCEC 97017658 + 97017638 97017678 41 ACTCTCCACTGCCAGGACTACAGAAGTGAACTGCTGTTTCC ACTCTCCACTGCCAGGACTACATAAGTGAACTGCTGTTTCC < 41bp 0.845945232514327 0.547969925510448 0.3346539 0.12423071 prediction 0.595950614007758 Functional Loss - NCAPH ENSG00000121152 CDS Human protein_coding chr2:97017658 chr2:97017660 nonsynonymous SNV 0.986 1 23 hm5C_associated_SNPs_54889 0 0 1 0 2 NCAPH chr2:97017569 3'AG 97017569 Downstream 92bp
chr2 97017660 97017660 1 + G T UCEC 97017658 + 97017638 97017678 41 ACTCTCCACTGCCAGGACTACAGAAGTGAACTGCTGTTTCC ACTCTCCACTGCCAGGACTACATAAGTGAACTGCTGTTTCC < 41bp 0.845945232514327 0.547969925510448 0.3346539 0.12423071 prediction 0.595950614007758 Functional Loss - NCAPH ENSG00000121152 CDS Human protein_coding chr2:97017658 chr2:97017660 nonsynonymous SNV 0.986 1 23 hm5C_associated_SNPs_54889 0 0 1 0 2 NCAPH chr2:97017758 5'GT 97017758 Upstream 99bp
chrX 79277890 79277890 1 + G T LUSC 79277888 + 79277868 79277908 41 GAGCTGCGGGAGAAAAAGGGCGGAGAGGAAGAGGAGGAGAG GAGCTGCGGGAGAAAAAGGGCGTAGAGGAAGAGGAGGAGAG < 41bp 0.797951769707223 0.460817654446083 0.742098 0.49143937 prediction 0.595903539414446 Functional Loss - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79277888 chrX:79277890 nonsynonymous SNV 0.086 1 23 hm5C_associated_SNPs_54891 0 0 0 0 1 TBX22 chrX:79277943 5'GT 79277943 Upstream 54bp
chr2 74173900 74173900 1 + G T UCEC 74173898 + 74173878 74173918 41 GGATATGATGTACCGGGAGCCAGCACGATGGTCCTACACAT GGATATGATGTACCGGGAGCCATCACGATGGTCCTACACAT < 41bp 0.834076520378461 0.536139822085832 0.26967478 0.102427185 prediction 0.595873396585258 Functional Loss - DGUOK ENSG00000114956 CDS Human protein_coding chr2:74173898 chr2:74173900 nonsynonymous SNV 0.970 1 23 hm5C_associated_SNPs_54894 0 0 1 3 1 DGUOK chr2:74173846 3'AG 74173846 Downstream 55bp
chr18 12325139 12325139 1 + G T ESCA 12325137 + 12325117 12325157 41 CGGAGCTGGTGGACGCAGTGCTGGACGTGGTGCGGAAGGAG CGGAGCTGGTGGACGCAGTGCTTGACGTGGTGCGGAAGGAG < 41bp 0.811984001361418 0.514052090686699 0.37628555 0.27653065 prediction 0.595863821349439 Functional Loss - TUBB6 ENSG00000176014 CDS Human protein_coding chr18:12325137 chr18:12325139 synonymous SNV . 0 23 hm5C_associated_SNPs_54895 0 0 1 0 1 TUBB6 chr18:12325066 3'AG 12325066 Downstream 74bp
chr20 44505409 44505409 1 + G T LUAD 44505406 + 44505386 44505426 41 CCAATCAAACAGGAAGAGAACGCGGGAGGCAGACATGTGCC CCAATCAAACAGGAAGAGAACGCTGGAGGCAGACATGTGCC < 41bp 0.879172275821485 0.581282335624019 0.888431 0.3604078 prediction 0.595779880394932 Functional Loss - ZSWIM3 ENSG00000132801 CDS Human protein_coding chr20:44505406 chr20:44505409 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_54900 0 0 0 0 1 ZSWIM3 chr20:44505353 3'AG 44505353 Downstream 57bp
chr19 55085561 55085561 1 + G T UCEC 55085559 + 55085539 55085579 41 CCAGGGCTGAGTCTGGGCCCCAGGACCCACGTGCAGGCAGG CCAGGGCTGAGTCTGGGCCCCATGACCCACGTGCAGGCAGG < 41bp 0.797875622637395 0.458248209633081 0.43692496 0.095127165 prediction 0.59575124527479 Functional Loss - LILRA2 ENSG00000104972;ENSG00000239998 CDS Human other chr19:55085559 chr19:55085561 nonsynonymous SNV 0.006 0 23 hm5C_associated_SNPs_54902 0 0 0 0 2 LILRA2 chr19:55085543 3'AG 55085543 Downstream 19bp
chr19 55085561 55085561 1 + G T UCEC 55085559 + 55085539 55085579 41 CCAGGGCTGAGTCTGGGCCCCAGGACCCACGTGCAGGCAGG CCAGGGCTGAGTCTGGGCCCCATGACCCACGTGCAGGCAGG < 41bp 0.797875622637395 0.458248209633081 0.43692496 0.095127165 prediction 0.59575124527479 Functional Loss - LILRA2 ENSG00000104972;ENSG00000239998 CDS Human other chr19:55085559 chr19:55085561 nonsynonymous SNV 0.006 0 23 hm5C_associated_SNPs_54902 0 0 0 0 2 LILRA2 chr19:55085578 5'GT 55085578 Upstream 18bp
chr16 69184516 69184516 1 + G T COAD 69184514 + 69184494 69184534 41 CTGGTCCCTGTGACATCTAACAGCAGTGAGAAGCAGTGGGT CTGGTCCCTGTGACATCTAACATCAGTGAGAAGCAGTGGGT < 41bp 0.839101762692873 0.541235370784903 0.85414207 0.21648121 prediction 0.59573278381594 Functional Loss - UTP4 ENSG00000141076 CDS Human protein_coding chr16:69184514 chr16:69184516 nonsynonymous SNV 0.978 0 23 hm5C_associated_SNPs_54905 0 0 1 0 2 UTP4 chr16:69184440 3'AG 69184440 Downstream 77bp
chr16 69184516 69184516 1 + G T COAD 69184514 + 69184494 69184534 41 CTGGTCCCTGTGACATCTAACAGCAGTGAGAAGCAGTGGGT CTGGTCCCTGTGACATCTAACATCAGTGAGAAGCAGTGGGT < 41bp 0.839101762692873 0.541235370784903 0.85414207 0.21648121 prediction 0.59573278381594 Functional Loss - UTP4 ENSG00000141076 CDS Human protein_coding chr16:69184514 chr16:69184516 nonsynonymous SNV 0.978 0 23 hm5C_associated_SNPs_54905 0 0 1 0 2 UTP4 chr16:69184611 5'GT 69184611 Upstream 96bp
chr9 137591910 137591910 1 + G T LUAD 137591908 + 137591888 137591928 41 CTTCCTCTACGAGGACCACACGGGGAAGCCTGGCCCGGAAG CTTCCTCTACGAGGACCACACGTGGAAGCCTGGCCCGGAAG < 41bp 0.830352944445246 0.532487693690688 0.935279 0.7172755 prediction 0.595730501509116 Functional Loss - COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137591908 chr9:137591910 nonsynonymous SNV 0.795 3 23 hm5C_associated_SNPs_54906 0 0 0 0 1 COL5A1 chr9:137591968 5'GT 137591968 Upstream 59bp
chr16 21181907 21181907 1 + G T LUAD 21181905 + 21181885 21181925 41 TTACCACCCTGGCTGCTCTGCTGGGGGTCATAATATTGGAA TTACCACCCTGGCTGCTCTGCTTGGGGTCATAATATTGGAA < 41bp 0.797843699917778 0.471672338743809 0.7336258 0.22920352 prediction 0.595687399835555 Functional Loss - TMEM159 ENSG00000011638 CDS Human protein_coding chr16:21181905 chr16:21181907 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_54907 0 0 1 0 1 TMEM159 chr16:21181926 5'GT 21181926 Upstream 20bp
chr2 113831957 113831957 1 + G T LIHC 113831955 + 113831935 113831975 41 ACACAAGAGATGGCCAGCTGCTGGTGGGAGATCCTGTTGCA ACACAAGAGATGGCCAGCTGCTTGTGGGAGATCCTGTTGCA < 41bp 0.852696765141002 0.554875416076933 0.41867486 0.13272917 prediction 0.595642698128139 Functional Loss - IL1F10 ENSG00000136697 CDS Human protein_coding chr2:113831955 chr2:113831957 synonymous SNV . 0 23 hm5C_associated_SNPs_54910 0 0 0 0 2 IL1F10 chr2:113831906 3'AG 113831906 Downstream 52bp
chr2 113831957 113831957 1 + G T LIHC 113831955 + 113831935 113831975 41 ACACAAGAGATGGCCAGCTGCTGGTGGGAGATCCTGTTGCA ACACAAGAGATGGCCAGCTGCTTGTGGGAGATCCTGTTGCA < 41bp 0.852696765141002 0.554875416076933 0.41867486 0.13272917 prediction 0.595642698128139 Functional Loss - IL1F10 ENSG00000136697 CDS Human protein_coding chr2:113831955 chr2:113831957 synonymous SNV . 0 23 hm5C_associated_SNPs_54910 0 0 0 0 2 IL1F10 chr2:113831991 5'GT 113831991 Upstream 35bp
chrX 153780395 153780395 1 + G T UCEC 153780392 + 153780372 153780412 41 AGCGCTGCCTGGAGGAGAATCAAGAGCTCCGAGGTGAGGAA AGCGCTGCCTGGAGGAGAATCAATAGCTCCGAGGTGAGGAA < 41bp 0.888765467225636 0.590966558886353 0.80610216 0.3088991 prediction 0.595597816678568 Functional Loss - IKBKG ENSG00000073009 CDS Human other chrX:153780392 chrX:153780395 stopgain 1.000 1 24 hm5C_associated_SNPs_54913 0 0 1 0 1 IKBKG chrX:153780404 5'GT 153780404 Upstream 10bp
chr11 15247207 15247207 1 + G T COAD 15247204 + 15247184 15247224 41 TTTGCCATCCAGAACTGTGCCAAGAGGCCTCATCAGGGGAA TTTGCCATCCAGAACTGTGCCAATAGGCCTCATCAGGGGAA < 41bp 0.797796676479115 0.426961985948094 0.48016667 0.07661891 prediction 0.595593352958229 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15247204 chr11:15247207 stopgain 1.000 1 24 hm5C_associated_SNPs_54914 0 0 0 0 1 INSC chr11:15247196 3'AG 15247196 Downstream 12bp
chr17 31324527 31324527 1 + G T LGG 31324525 + 31324505 31324545 41 TGAAGATAACCCAAGAGCCTCAGGGTCTGGGTTACTGGTAA TGAAGATAACCCAAGAGCCTCATGGTCTGGGTTACTGGTAA < 41bp 0.84209752163074 0.54430813817264 0.90429723 0.19748303 prediction 0.595578766916201 Functional Loss - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31324525 chr17:31324527 nonsynonymous SNV 0.139 1 23 hm5C_associated_SNPs_54915 0 0 0 3 2 SPACA3 chr17:31324463 3'AG 31324463 Downstream 65bp
chr17 31324527 31324527 1 + G T LGG 31324525 + 31324505 31324545 41 TGAAGATAACCCAAGAGCCTCAGGGTCTGGGTTACTGGTAA TGAAGATAACCCAAGAGCCTCATGGTCTGGGTTACTGGTAA < 41bp 0.84209752163074 0.54430813817264 0.90429723 0.19748303 prediction 0.595578766916201 Functional Loss - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31324525 chr17:31324527 nonsynonymous SNV 0.139 1 23 hm5C_associated_SNPs_54915 0 0 0 3 2 SPACA3 chr17:31324541 5'GT 31324541 Upstream 15bp
chr9 132623876 132623876 1 + A C LUSC 132623872 + 132623852 132623892 41 CCTGCTACATGAACGCTGCCCTGCAGGCCCTGTCCAATTGG CCTGCTACATGAACGCTGCCCTGCCGGCCCTGTCCAATTGG < 41bp 0.797789271114946 0.382225684892506 0.314486 0.11746177 prediction 0.595578542229892 Functional Loss - USP20 ENSG00000136878 CDS Human protein_coding chr9:132623872 chr9:132623876 nonsynonymous SNV 0.986 4 25 hm5C_associated_SNPs_54916 0 0 1 0 2 USP20 chr9:132623822 3'AG 132623822 Downstream 55bp
chr9 132623876 132623876 1 + A C LUSC 132623872 + 132623852 132623892 41 CCTGCTACATGAACGCTGCCCTGCAGGCCCTGTCCAATTGG CCTGCTACATGAACGCTGCCCTGCCGGCCCTGTCCAATTGG < 41bp 0.797789271114946 0.382225684892506 0.314486 0.11746177 prediction 0.595578542229892 Functional Loss - USP20 ENSG00000136878 CDS Human protein_coding chr9:132623872 chr9:132623876 nonsynonymous SNV 0.986 4 25 hm5C_associated_SNPs_54916 0 0 1 0 2 USP20 chr9:132623891 5'GT 132623891 Upstream 16bp
chr1 200860813 200860813 1 + A C LUAD 200860809 + 200860789 200860829 41 GCGCAGGGGCAGGCGGGCGGCGCCAGAGCTCCATGGGACAG GCGCAGGGGCAGGCGGGCGGCGCCCGAGCTCCATGGGACAG < 41bp 0.880350880609471 0.582564316168989 0.89746857 0.8912345 prediction 0.595573128880965 Functional Loss - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200860809 chr1:200860813 synonymous SNV . 0 25 hm5C_associated_SNPs_54919 0 0 0 0 1 C1orf106 chr1:200860829 5'GT 200860829 Upstream 17bp
chr18 29039937 29039937 1 + G T LUAD 29039934 + 29039914 29039954 41 GTTCCTCCTAAGCAGAAACACTGGGGAAGTCCGTACTTTGA GTTCCTCCTAAGCAGAAACACTGTGGAAGTCCGTACTTTGA < 41bp 0.797762979653829 0.42719804985787 0.16838229 0.13246086 prediction 0.595525959307659 Functional Loss - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29039934 chr18:29039937 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_54921 0 0 0 0 1 DSG3 chr18:29039974 5'GT 29039974 Upstream 38bp
chr6 108645051 108645051 1 + G T LIHC 108645048 + 108645028 108645068 41 GCCTATACGGTTCAGACATCCGAGAGCATGACCCCAACTGC GCCTATACGGTTCAGACATCCGATAGCATGACCCCAACTGC < 41bp 0.797747836718486 0.435714768376895 0.29805768 0.040555656 prediction 0.595495673436972 Functional Loss - AFG1L ENSG00000135537 CDS Human protein_coding chr6:108645048 chr6:108645051 nonsynonymous SNV 0.015 0 24 hm5C_associated_SNPs_54922 0 0 0 0 1 AFG1L chr6:108645029 3'AG 108645029 Downstream 23bp
chr11 117864114 117864114 1 + G T UCEC 117864112 + 117864092 117864132 41 GATTGCCATTCGCAAGGTGCCGGGAAACTTCACGGTATGGG GATTGCCATTCGCAAGGTGCCGTGAAACTTCACGGTATGGG < 41bp 0.84466940911424 0.5469331531593 0.87991154 0.38060147 prediction 0.59547251190988 Functional Loss - IL10RA ENSG00000110324 CDS Human protein_coding chr11:117864112 chr11:117864114 stopgain 0.004 0 23 hm5C_associated_SNPs_54923 0 0 0 0 1 IL10RA chr11:117864125 5'GT 117864125 Upstream 12bp
chr16 84456253 84456253 1 + G T SKCM 84456251 + 84456231 84456271 41 ACAGGGGGTCGTGATTGGAACAGGGGAAAGCTCTCAGTTCG ACAGGGGGTCGTGATTGGAACATGGGAAAGCTCTCAGTTCG < 41bp 0.797735094378579 0.460332792154754 0.91141653 0.41369542 prediction 0.595470188757157 Functional Loss - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84456251 chr16:84456253 nonsynonymous SNV 0.985 5 23 hm5C_associated_SNPs_54924 0 0 0 0 2 ATP2C2 chr16:84456235 3'AG 84456235 Downstream 19bp
chr16 84456253 84456253 1 + G T SKCM 84456251 + 84456231 84456271 41 ACAGGGGGTCGTGATTGGAACAGGGGAAAGCTCTCAGTTCG ACAGGGGGTCGTGATTGGAACATGGGAAAGCTCTCAGTTCG < 41bp 0.797735094378579 0.460332792154754 0.91141653 0.41369542 prediction 0.595470188757157 Functional Loss - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84456251 chr16:84456253 nonsynonymous SNV 0.985 5 23 hm5C_associated_SNPs_54924 0 0 0 0 2 ATP2C2 chr16:84456303 5'GT 84456303 Upstream 51bp
chr12 52309932 52309932 1 + G T UCEC 52309929 + 52309909 52309949 41 GTGCTGGACGAGCAGATCCGCACGGACTGCTTTGAGTCCTA GTGCTGGACGAGCAGATCCGCACTGACTGCTTTGAGTCCTA < 41bp 0.797725328862042 0.412445641576343 0.45728147 0.21229458 prediction 0.595450657724085 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309929 chr12:52309932 synonymous SNV . 0 24 hm5C_associated_SNPs_54926 0 0 0 0 1 ACVRL1 chr12:52310017 5'GT 52310017 Upstream 86bp
chr11 85365238 85365238 1 + G T COAD 85365235 + 85365215 85365255 41 AGCTGCTGGCTTACCAATGGCAGGGATACCTTTTCTTACAA AGCTGCTGGCTTACCAATGGCAGTGATACCTTTTCTTACAA < 41bp 0.888141107677501 0.590454810487302 0.9108582 0.26888573 prediction 0.595372594380398 Functional Loss - TMEM126A ENSG00000171202 CDS Human protein_coding chr11:85365235 chr11:85365238 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_54929 0 0 0 0 1 TMEM126A chr11:85365300 5'GT 85365300 Upstream 63bp
chr17 79682102 79682102 1 + G T UCEC 79682100 + 79682080 79682120 41 TGAGCGCCTCGCTGTGCAGACAGGTGCGTGGTGTGTGCCAG TGAGCGCCTCGCTGTGCAGACATGTGCGTGGTGTGTGCCAG < 41bp 0.797682807098333 0.458372623699746 0.9050362 0.20656416 prediction 0.595365614196666 Functional Loss - SLC25A10 ENSG00000183048;ENSG00000262660 CDS Human other chr17:79682100 chr17:79682102 nonsynonymous SNV 0.928 4 23 hm5C_associated_SNPs_54930 0 0 0 0 1 SLC25A10 chr17:79682102 5'GT 79682102 Upstream 1bp
chr8 145160669 145160669 1 + G T LUAD 145160667 + 145160647 145160687 41 GGAGATGCCCACATCATTGGCAGGTGAGGCAGGCTGGGGGG GGAGATGCCCACATCATTGGCATGTGAGGCAGGCTGGGGGG < 41bp 0.797671474467573 0.468041215817514 0.92328167 0.53429997 prediction 0.595342948935146 Functional Loss - MAF1 ENSG00000179632 CDS Human protein_coding chr8:145160667 chr8:145160669 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_54931 0 0 1 0 1 MAF1 chr8:145160669 5'GT 145160669 Upstream 1bp
chr5 36152948 36152948 1 + G T UCEC 36152945 + 36152925 36152965 41 ACGTGGGGATGGGATTCCAGCAAGACTTCTGAACTGCTGTC ACGTGGGGATGGGATTCCAGCAATACTTCTGAACTGCTGTC < 41bp 0.87514070774848 0.577473273384983 0.6236016 0.33689776 prediction 0.595334868726994 Functional Loss - SKP2 ENSG00000145604 CDS Human protein_coding chr5:36152945 chr5:36152948 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_54932 0 0 1 0 1 SKP2 chr5:36152873 3'AG 36152873 Downstream 76bp
chr9 113496605 113496605 1 + G T SARC 113496603 + 113496583 113496623 41 CTTTGTGACCCTGCACTGTACAGCAACAGGCATTCCTGTCC CTTTGTGACCCTGCACTGTACATCAACAGGCATTCCTGTCC < 41bp 0.797666446394316 0.467441890900076 0.12594306 0.02007401 prediction 0.595332892788632 Functional Loss - MUSK ENSG00000030304 CDS Human protein_coding chr9:113496603 chr9:113496605 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_54934 0 0 0 0 2 MUSK chr9:113496531 3'AG 113496531 Downstream 75bp
chr9 113496605 113496605 1 + G T SARC 113496603 + 113496583 113496623 41 CTTTGTGACCCTGCACTGTACAGCAACAGGCATTCCTGTCC CTTTGTGACCCTGCACTGTACATCAACAGGCATTCCTGTCC < 41bp 0.797666446394316 0.467441890900076 0.12594306 0.02007401 prediction 0.595332892788632 Functional Loss - MUSK ENSG00000030304 CDS Human protein_coding chr9:113496603 chr9:113496605 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_54934 0 0 0 0 2 MUSK chr9:113496655 5'GT 113496655 Upstream 51bp
chr13 26927936 26927936 1 + G T LUAD 26927934 + 26927914 26927954 41 AGAAGCCAGTTCAGTTACCTCGGGGAATGGTGAAGTCACTA AGAAGCCAGTTCAGTTACCTCGTGGAATGGTGAAGTCACTA < 41bp 0.825777616216265 0.528131406637325 0.87930596 0.20495027 prediction 0.59529241915788 Functional Loss - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26927934 chr13:26927936 synonymous SNV . 0 23 hm5C_associated_SNPs_54937 0 0 1 0 2 CDK8 chr13:26927877 3'AG 26927877 Downstream 60bp
chr13 26927936 26927936 1 + G T LUAD 26927934 + 26927914 26927954 41 AGAAGCCAGTTCAGTTACCTCGGGGAATGGTGAAGTCACTA AGAAGCCAGTTCAGTTACCTCGTGGAATGGTGAAGTCACTA < 41bp 0.825777616216265 0.528131406637325 0.87930596 0.20495027 prediction 0.59529241915788 Functional Loss - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26927934 chr13:26927936 synonymous SNV . 0 23 hm5C_associated_SNPs_54937 0 0 1 0 2 CDK8 chr13:26928017 5'GT 26928017 Upstream 82bp
chr16 2279622 2279622 1 + G C LUSC 2279621 + 2279601 2279641 41 CCCATCACTGTGGCCCACATCGTGGTGGAGGCGGCCTCTCT CCCATCACTGTGGCCCACATCCTGGTGGAGGCGGCCTCTCT < 41bp 0.797581614718194 0.496300803252348 0.90696084 0.84187186 prediction 0.595163229436388 Functional Loss - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2279621 chr16:2279622 nonsynonymous SNV 0.991 0 22 hm5C_associated_SNPs_54942 0 0 1 0 2 E4F1 chr16:2279571 3'AG 2279571 Downstream 52bp
chr16 2279622 2279622 1 + G C LUSC 2279621 + 2279601 2279641 41 CCCATCACTGTGGCCCACATCGTGGTGGAGGCGGCCTCTCT CCCATCACTGTGGCCCACATCCTGGTGGAGGCGGCCTCTCT < 41bp 0.797581614718194 0.496300803252348 0.90696084 0.84187186 prediction 0.595163229436388 Functional Loss - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2279621 chr16:2279622 nonsynonymous SNV 0.991 0 22 hm5C_associated_SNPs_54942 0 0 1 0 2 E4F1 chr16:2279676 5'GT 2279676 Upstream 55bp
chr17 61744363 61744363 1 + G T UCEC 61744361 + 61744341 61744381 41 GATCAAGGCTTCCCAGTCCGCAGGGGATATAAATACTATCT GATCAAGGCTTCCCAGTCCGCATGGGATATAAATACTATCT < 41bp 0.860619771998904 0.563054410888605 0.8771304 0.1325452 prediction 0.595130722220598 Functional Loss - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61744361 chr17:61744363 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_54944 0 0 0 0 2 MAP3K3 chr17:61744300 3'AG 61744300 Downstream 64bp
chr17 61744363 61744363 1 + G T UCEC 61744361 + 61744341 61744381 41 GATCAAGGCTTCCCAGTCCGCAGGGGATATAAATACTATCT GATCAAGGCTTCCCAGTCCGCATGGGATATAAATACTATCT < 41bp 0.860619771998904 0.563054410888605 0.8771304 0.1325452 prediction 0.595130722220598 Functional Loss - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61744361 chr17:61744363 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_54944 0 0 0 0 2 MAP3K3 chr17:61744420 5'GT 61744420 Upstream 58bp
chr2 233405389 233405389 1 + G T COAD 233405386 + 233405366 233405406 41 GTGCTGAGGGTGCCGTCCACCATGGTGTGGCGGCCGGATAT GTGCTGAGGGTGCCGTCCACCATTGTGTGGCGGCCGGATAT < 41bp 0.797563213582171 0.412343148218005 0.08991355 0.032445997 prediction 0.595126427164341 Functional Loss - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233405386 chr2:233405389 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_54945 0 0 0 0 2 CHRNG chr2:233405312 3'AG 233405312 Downstream 78bp
chr2 233405389 233405389 1 + G T COAD 233405386 + 233405366 233405406 41 GTGCTGAGGGTGCCGTCCACCATGGTGTGGCGGCCGGATAT GTGCTGAGGGTGCCGTCCACCATTGTGTGGCGGCCGGATAT < 41bp 0.797563213582171 0.412343148218005 0.08991355 0.032445997 prediction 0.595126427164341 Functional Loss - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233405386 chr2:233405389 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_54945 0 0 0 0 2 CHRNG chr2:233405421 5'GT 233405421 Upstream 33bp
chr2 98928346 98928346 1 + G T LUSC 98928343 + 98928323 98928363 41 CACTGAAAGAAGCGGACACGCAGGATTCCAGAGAGCCAAGA CACTGAAAGAAGCGGACACGCAGTATTCCAGAGAGCCAAGA < 41bp 0.847008974248391 0.549457303438865 0.5025077 0.47045267 prediction 0.595103341619052 Functional Loss - VWA3B ENSG00000168658 CDS Human protein_coding chr2:98928343 chr2:98928346 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_54948 0 0 0 0 1 VWA3B chr2:98928282 3'AG 98928282 Downstream 65bp
chrX 140953352 140953352 1 + G T LUAD 140953350 + 140953330 140953370 41 TGAGGGGTGGAACTTCAGATCAGCGAATGGATAGTCTTGTC TGAGGGGTGGAACTTCAGATCATCGAATGGATAGTCTTGTC < 41bp 0.797522255648934 0.475716178544886 0.55760443 0.21173945 prediction 0.595044511297868 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140953350 chrX:140953352 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_54952 0 0 0 0 2 MAGEC3 chrX:140953257 3'AG 140953257 Downstream 96bp
chrX 140953352 140953352 1 + G T LUAD 140953350 + 140953330 140953370 41 TGAGGGGTGGAACTTCAGATCAGCGAATGGATAGTCTTGTC TGAGGGGTGGAACTTCAGATCATCGAATGGATAGTCTTGTC < 41bp 0.797522255648934 0.475716178544886 0.55760443 0.21173945 prediction 0.595044511297868 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140953350 chrX:140953352 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_54952 0 0 0 0 2 MAGEC3 chrX:140953391 5'GT 140953391 Upstream 40bp
chr19 53987091 53987091 1 + G T PRAD 53987089 + 53987069 53987109 41 AGTCAGGGATGGCTCTTCCTCAGGTGAGATGATATTTTTGG AGTCAGGGATGGCTCTTCCTCATGTGAGATGATATTTTTGG < 41bp 0.825022443906882 0.527500910298803 0.8863329 0.40799913 prediction 0.595043067216158 Functional Loss - ZNF813 ENSG00000198346 CDS Human protein_coding chr19:53987089 chr19:53987091 nonsynonymous SNV 0.020 3 23 hm5C_associated_SNPs_54953 0 0 0 3 1 ZNF813 chr19:53987091 5'GT 53987091 Upstream 1bp
chr3 50220186 50220186 1 + G T LIHC 50220183 + 50220163 50220203 41 GCAGAGGCGCCGCAGAGCCCCGCGGTGTACGCCCGCATCGG GCAGAGGCGCCGCAGAGCCCCGCTGTGTACGCCCGCATCGG < 41bp 0.896907996745952 0.599412786204757 0.70997834 0.15287969 prediction 0.594990421082391 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50220183 chr3:50220186 synonymous SNV . 0 24 hm5C_associated_SNPs_54957 0 0 0 0 1 SEMA3F chr3:50220216 5'GT 50220216 Upstream 31bp
chr17 20135631 20135631 1 + A T STAD 20135627 + 20135607 20135647 41 GCACCGTGAAGAGGAAACTGCTGGAGGAGGAGGAGAAGAAT GCACCGTGAAGAGGAAACTGCTGGTGGAGGAGGAGAAGAAT < 41bp 0.797492519912989 0.487460567755207 0.4563851 0.52422506 prediction 0.594985039825978 Functional Loss - SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135627 chr17:20135631 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_54958 0 0 1 0 2 SPECC1 chr17:20135718 5'GT 20135718 Upstream 88bp
chr17 20135631 20135631 1 + A T STAD 20135627 + 20135607 20135647 41 GCACCGTGAAGAGGAAACTGCTGGAGGAGGAGGAGAAGAAT GCACCGTGAAGAGGAAACTGCTGGTGGAGGAGGAGAAGAAT < 41bp 0.797492519912989 0.487460567755207 0.4563851 0.52422506 prediction 0.594985039825978 Functional Loss - SPECC1 ENSG00000128487 CDS Human lincRNA chr17:20135627 chr17:20135631 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_54958 0 0 1 0 2 SPECC1 chr17:20135727 5'GT 20135727 Upstream 97bp
chr19 22785428 22785428 1 + G T LUSC 22785426 + 22785406 22785446 41 GCTGCTTTATGCAGCTGATGCAGGAAAAGGTGGACCTGAAA GCTGCTTTATGCAGCTGATGCATGAAAAGGTGGACCTGAAA < 41bp 0.808120248529307 0.510628637959141 0.8784226 0.14291969 prediction 0.594983221140331 Functional Loss - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22785426 chr19:22785428 . . 0 23 hm5C_associated_SNPs_54959 0 0 0 0 2 GOLGA2P9 chr19:22785405 3'AG 22785405 Downstream 24bp
chr19 22785428 22785428 1 + G T LUSC 22785426 + 22785406 22785446 41 GCTGCTTTATGCAGCTGATGCAGGAAAAGGTGGACCTGAAA GCTGCTTTATGCAGCTGATGCATGAAAAGGTGGACCTGAAA < 41bp 0.808120248529307 0.510628637959141 0.8784226 0.14291969 prediction 0.594983221140331 Functional Loss - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22785426 chr19:22785428 . . 0 23 hm5C_associated_SNPs_54959 0 0 0 0 2 GOLGA2P9 chr19:22785507 5'GT 22785507 Upstream 80bp
chr9 140053153 140053153 1 + G T LUSC 140053151 + 140053131 140053171 41 GGTACCAGATGTCCACCAGACTGAAGGTGGGGGCCCCACAG GGTACCAGATGTCCACCAGACTTAAGGTGGGGGCCCCACAG < 41bp 0.832740409350386 0.535254540003172 0.23821512 0.32370692 prediction 0.59497173869443 Functional Loss - GRIN1 ENSG00000176884 CDS Human protein_coding chr9:140053151 chr9:140053153 synonymous SNV . 0 23 hm5C_associated_SNPs_54960 0 0 0 0 2 GRIN1 chr9:140053073 3'AG 140053073 Downstream 81bp
chr9 140053153 140053153 1 + G T LUSC 140053151 + 140053131 140053171 41 GGTACCAGATGTCCACCAGACTGAAGGTGGGGGCCCCACAG GGTACCAGATGTCCACCAGACTTAAGGTGGGGGCCCCACAG < 41bp 0.832740409350386 0.535254540003172 0.23821512 0.32370692 prediction 0.59497173869443 Functional Loss - GRIN1 ENSG00000176884 CDS Human protein_coding chr9:140053151 chr9:140053153 synonymous SNV . 0 23 hm5C_associated_SNPs_54960 0 0 0 0 2 GRIN1 chr9:140053156 5'GT 140053156 Upstream 4bp
chr1 32740035 32740035 1 + G T LUAD 32740032 + 32740012 32740052 41 GTCCCACTGGATGGCAAGGGCACGGTAAGAGGCGAGACAGG GTCCCACTGGATGGCAAGGGCACTGTAAGAGGCGAGACAGG < 41bp 0.797485222531109 0.416854751075288 0.32620263 0.2850135 prediction 0.594970445062217 Functional Loss - LCK ENSG00000182866 CDS Human protein_coding chr1:32740032 chr1:32740035 synonymous SNV . 0 24 hm5C_associated_SNPs_54961 0 0 0 0 1 LCK chr1:32740035 5'GT 32740035 Upstream 1bp
chr20 43058194 43058194 1 + A T LUAD 43058190 + 43058170 43058210 41 TGAGACCCCACAGCCCTCACCGCCAGGTGGCTCAGGGTCTG TGAGACCCCACAGCCCTCACCGCCTGGTGGCTCAGGGTCTG < 41bp 0.797480622727687 0.492562926923284 0.7074379 0.2636268 prediction 0.594961245455375 Functional Loss - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43058190 chr20:43058194 synonymous SNV . 0 25 hm5C_associated_SNPs_54962 0 0 0 0 1 HNF4A chr20:43058163 3'AG 43058163 Downstream 32bp
chr11 65780356 65780356 1 + G T COAD 65780353 + 65780333 65780373 41 ATGGGGAGCACAGACTGCCGCAAGACCAGGGTCACTGGAGA ATGGGGAGCACAGACTGCCGCAATACCAGGGTCACTGGAGA < 41bp 0.797470103798331 0.4168536861489 0.33618325 0.076245755 prediction 0.594940207596663 Functional Loss - CST6 ENSG00000175315 CDS Human protein_coding chr11:65780353 chr11:65780356 nonsynonymous SNV 0.050 2 24 hm5C_associated_SNPs_54964 0 0 0 0 2 CST6 chr11:65780297 3'AG 65780297 Downstream 60bp
chr11 65780356 65780356 1 + G T COAD 65780353 + 65780333 65780373 41 ATGGGGAGCACAGACTGCCGCAAGACCAGGGTCACTGGAGA ATGGGGAGCACAGACTGCCGCAATACCAGGGTCACTGGAGA < 41bp 0.797470103798331 0.4168536861489 0.33618325 0.076245755 prediction 0.594940207596663 Functional Loss - CST6 ENSG00000175315 CDS Human protein_coding chr11:65780353 chr11:65780356 nonsynonymous SNV 0.050 2 24 hm5C_associated_SNPs_54964 0 0 0 0 2 CST6 chr11:65780422 5'GT 65780422 Upstream 67bp
chr16 67039248 67039248 1 + G T GBM 67039245 + 67039225 67039265 41 ACCGTATGATGGACATAGTTCAAGATGCCACTTTCGTGTAT ACCGTATGATGGACATAGTTCAATATGCCACTTTCGTGTAT < 41bp 0.797467390708423 0.423148518294118 0.36497554 0.10026398 prediction 0.594934781416846 Functional Loss - CES4A ENSG00000172824 CDS Human protein_coding chr16:67039245 chr16:67039248 nonsynonymous SNV 0.007 3 24 hm5C_associated_SNPs_54965 0 0 0 0 1 CES4A chr16:67039296 5'GT 67039296 Upstream 49bp
chr1 15812539 15812539 1 + A T BLCA 15812535 + 15812515 15812555 41 GGTGATGGCGTGATATGCACCTGCAACGTGAGTACCAAAAA GGTGATGGCGTGATATGCACCTGCTACGTGAGTACCAAAAA < 41bp 0.797462698160487 0.486833303461858 0.2918871 0.24406764 prediction 0.594925396320974 Functional Loss - CELA2B ENSG00000215704 CDS Human protein_coding chr1:15812535 chr1:15812539 nonsynonymous SNV 0.054 2 25 hm5C_associated_SNPs_54966 0 0 0 0 1 CELA2B chr1:15812541 5'GT 15812541 Upstream 3bp
chr9 134006196 134006196 1 + G T READ 134006194 + 134006174 134006214 41 AGCAGCTGGCAGTGGGAAAACAGAATGGAACTGTGGTCCAG AGCAGCTGGCAGTGGGAAAACATAATGGAACTGTGGTCCAG < 41bp 0.79743726175214 0.487033088237673 0.28902838 0.24787381 prediction 0.59487452350428 Functional Loss - NUP214 ENSG00000126883 CDS Human protein_coding chr9:134006194 chr9:134006196 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_54968 0 0 1 0 1 NUP214 chr9:134006223 5'GT 134006223 Upstream 28bp
chr5 156890180 156890180 1 + G T UCEC 156890178 + 156890158 156890198 41 GACCTCAGCCCTGAGGTGCCCAGCAATGCCACCTTTCACAG GACCTCAGCCCTGAGGTGCCCATCAATGCCACCTTTCACAG < 41bp 0.855831240786156 0.558411239002098 0.20371988 0.09383586 prediction 0.594840003568115 Functional Loss - NIPAL4 ENSG00000172548 CDS Human protein_coding chr5:156890178 chr5:156890180 nonsynonymous SNV 0.034 2 23 hm5C_associated_SNPs_54969 0 0 0 0 1 NIPAL4 chr5:156890102 3'AG 156890102 Downstream 79bp
chr3 52823864 52823864 1 + A T rs61730358 52823860 + 52823840 52823880 41 GGAGGGACCAAGCTGTGCTGCGGCAGGACGGGTAACCTGCC GGAGGGACCAAGCTGTGCTGCGGCTGGACGGGTAACCTGCC < 41bp 0.798497106545107 0.501099647254415 0.5083354 0.53533095 prediction 0.594794918581384 Functional Loss - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52823860 chr3:52823864 nonsynonymous SNV 0.660 1 25 hm5C_associated_SNPs_54971 0 0 1 0 1 ITIH1 chr3:52823870 5'GT 52823870 Upstream 7bp
chr2 241988508 241988508 1 + G T ESCA 241988506 + 241988486 241988526 41 GGCTACTGCATGGAGCACGGCGGGAGCTACCTCTGCGTCTG GGCTACTGCATGGAGCACGGCGTGAGCTACCTCTGCGTCTG < 41bp 0.79736756813402 0.456557826474246 0.92524195 0.42307454 prediction 0.594735136268039 Functional Loss - SNED1 ENSG00000162804 CDS Human protein_coding chr2:241988506 chr2:241988508 nonsynonymous SNV 0.329 5 23 hm5C_associated_SNPs_54973 0 0 0 0 2 SNED1 chr2:241988439 3'AG 241988439 Downstream 70bp
chr2 241988508 241988508 1 + G T ESCA 241988506 + 241988486 241988526 41 GGCTACTGCATGGAGCACGGCGGGAGCTACCTCTGCGTCTG GGCTACTGCATGGAGCACGGCGTGAGCTACCTCTGCGTCTG < 41bp 0.79736756813402 0.456557826474246 0.92524195 0.42307454 prediction 0.594735136268039 Functional Loss - SNED1 ENSG00000162804 CDS Human protein_coding chr2:241988506 chr2:241988508 nonsynonymous SNV 0.329 5 23 hm5C_associated_SNPs_54973 0 0 0 0 2 SNED1 chr2:241988552 5'GT 241988552 Upstream 45bp
chr12 113355425 113355425 1 + G T LAML 113355422 + 113355402 113355442 41 ACCCAAAGGGTTGGAGGCAGCTGGCACAAGAGGCTGAGGCC ACCCAAAGGGTTGGAGGCAGCTGTCACAAGAGGCTGAGGCC < 41bp 0.797344432790907 0.412482280504933 0.7296202 0.34942174 prediction 0.594688865581815 Functional Loss - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113355422 chr12:113355425 nonsynonymous SNV 0.166 3 24 hm5C_associated_SNPs_54974 0 0 0 0 2 OAS1 chr12:113355352 3'AG 113355352 Downstream 74bp
chr12 113355425 113355425 1 + G T LAML 113355422 + 113355402 113355442 41 ACCCAAAGGGTTGGAGGCAGCTGGCACAAGAGGCTGAGGCC ACCCAAAGGGTTGGAGGCAGCTGTCACAAGAGGCTGAGGCC < 41bp 0.797344432790907 0.412482280504933 0.7296202 0.34942174 prediction 0.594688865581815 Functional Loss - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113355422 chr12:113355425 nonsynonymous SNV 0.166 3 24 hm5C_associated_SNPs_54974 0 0 0 0 2 OAS1 chr12:113355505 5'GT 113355505 Upstream 81bp
chr16 57255297 57255297 1 + G T LUAD 57255294 + 57255274 57255314 41 TCTGGCGTCATGCAGATTGGCTGGGCCACTCGAGACAGCAA TCTGGCGTCATGCAGATTGGCTGTGCCACTCGAGACAGCAA < 41bp 0.797332723733031 0.413696148206573 0.21798244 0.019906312 prediction 0.594665447466063 Functional Loss - RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57255294 chr16:57255297 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54975 0 0 1 0 1 RSPRY1 chr16:57255327 5'GT 57255327 Upstream 31bp
chr1 9030990 9030990 1 + G T UCEC 9030988 + 9030968 9031008 41 ACCATCCACAACGATTACCGCAGGACCCAGCCCCTGAACCA ACCATCCACAACGATTACCGCATGACCCAGCCCCTGAACCA < 41bp 0.848213788357562 0.550886526377113 0.35074455 0.10907787 prediction 0.594654523960898 Functional Loss - CA6 ENSG00000131686 CDS Human protein_coding chr1:9030988 chr1:9030990 nonsynonymous SNV 0.047 0 23 hm5C_associated_SNPs_54976 0 0 0 0 1 CA6 chr1:9030926 3'AG 9030926 Downstream 65bp
chr20 30065698 30065698 1 + G T LUAD 30065695 + 30065675 30065715 41 ACACTGGTGGTCGTGGACACCTGGGAGGCCGAGAAACTGGT ACACTGGTGGTCGTGGACACCTGTGAGGCCGAGAAACTGGT < 41bp 0.797322592117314 0.427636152839345 0.3049584 0.09394851 prediction 0.594645184234629 Functional Loss - REM1 ENSG00000088320 CDS Human protein_coding chr20:30065695 chr20:30065698 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54978 0 0 0 0 2 REM1 chr20:30065631 3'AG 30065631 Downstream 68bp
chr20 30065698 30065698 1 + G T LUAD 30065695 + 30065675 30065715 41 ACACTGGTGGTCGTGGACACCTGGGAGGCCGAGAAACTGGT ACACTGGTGGTCGTGGACACCTGTGAGGCCGAGAAACTGGT < 41bp 0.797322592117314 0.427636152839345 0.3049584 0.09394851 prediction 0.594645184234629 Functional Loss - REM1 ENSG00000088320 CDS Human protein_coding chr20:30065695 chr20:30065698 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54978 0 0 0 0 2 REM1 chr20:30065713 5'GT 30065713 Upstream 16bp
chrX 47269746 47269746 1 + G T GBM 47269744 + 47269724 47269764 41 GGCACAGACTGGACCCTGCTCAGAGGACCATGCACAAGGAT GGCACAGACTGGACCCTGCTCATAGGACCATGCACAAGGAT < 41bp 0.797316912198426 0.455174755718669 0.91016424 0.24581456 prediction 0.594633824396852 Functional Loss - ZNF157 ENSG00000147117 CDS Human protein_coding chrX:47269744 chrX:47269746 nonsynonymous SNV 0.956 3 23 hm5C_associated_SNPs_54981 0 0 0 0 2 ZNF157 chrX:47269675 3'AG 47269675 Downstream 72bp
chrX 47269746 47269746 1 + G T GBM 47269744 + 47269724 47269764 41 GGCACAGACTGGACCCTGCTCAGAGGACCATGCACAAGGAT GGCACAGACTGGACCCTGCTCATAGGACCATGCACAAGGAT < 41bp 0.797316912198426 0.455174755718669 0.91016424 0.24581456 prediction 0.594633824396852 Functional Loss - ZNF157 ENSG00000147117 CDS Human protein_coding chrX:47269744 chrX:47269746 nonsynonymous SNV 0.956 3 23 hm5C_associated_SNPs_54981 0 0 0 0 2 ZNF157 chrX:47269801 5'GT 47269801 Upstream 56bp
chr19 14574759 14574759 1 + G T LAML 14574756 + 14574736 14574776 41 CCTTTAGCCCTGGGGCTTCTCCAGGATCCGAGGCCCGGACC CCTTTAGCCCTGGGGCTTCTCCATGATCCGAGGCCCGGACC < 41bp 0.797304592326042 0.403893267634164 0.91780776 0.31636 prediction 0.594609184652085 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574756 chr19:14574759 stopgain 0.007 0 24 hm5C_associated_SNPs_54982 0 0 1 0 1 PKN1 chr19:14574781 5'GT 14574781 Upstream 23bp
chr20 56137175 56137175 1 + G T LUAD 56137172 + 56137152 56137192 41 GATGTGGCCAGGATCGAAAGCAAGACGGTTATCGTCACCCA GATGTGGCCAGGATCGAAAGCAATACGGTTATCGTCACCCA < 41bp 0.888943396275362 0.591644038897693 0.28342956 0.15444827 prediction 0.594598714755339 Functional Loss - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56137172 chr20:56137175 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_54983 0 0 0 0 1 PCK1 chr20:56137127 3'AG 56137127 Downstream 49bp
chr1 151039791 151039791 1 + G T UCEC 151039788 + 151039768 151039808 41 ATCTGTCGGAGCTGGAAGGCCTGGGTCTGTCAGATACAGCC ATCTGTCGGAGCTGGAAGGCCTGTGTCTGTCAGATACAGCC < 41bp 0.881568230076858 0.584269569834663 0.7220738 0.20685515 prediction 0.594597320484388 Functional Loss - MLLT11 ENSG00000213190 CDS Human other chr1:151039788 chr1:151039791 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_54984 0 0 1 0 1 MLLT11 chr1:151039695 3'AG 151039695 Downstream 97bp
chr5 177546877 177546877 1 + G T LUAD 177546875 + 177546855 177546895 41 CATTCTCGCGCGGGTGACTTCAGCAAGACCTCGCTGCCAGA CATTCTCGCGCGGGTGACTTCATCAAGACCTCGCTGCCAGA < 41bp 0.834709399632749 0.537420668201599 0.8484188 0.23070517 prediction 0.5945774628623 Functional Loss - N4BP3 ENSG00000145911 CDS Human protein_coding chr5:177546875 chr5:177546877 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_54986 0 0 0 0 1 N4BP3 chr5:177546914 5'GT 177546914 Upstream 38bp
chr1 119923829 119923829 1 + G T UCEC 119923827 + 119923807 119923847 41 CACGCGGGATGACAACATTGCAGCATTTAAAAGGTGTGGTC CACGCGGGATGACAACATTGCATCATTTAAAAGGTGTGGTC < 41bp 0.797272269272397 0.482983733301304 0.11853647 0.086090565 prediction 0.594544538544793 Functional Loss - HAO2 ENSG00000116882 CDS Human protein_coding chr1:119923827 chr1:119923829 nonsynonymous SNV 0.449 3 23 hm5C_associated_SNPs_54989 0 0 0 0 1 HAO2 chr1:119923839 5'GT 119923839 Upstream 11bp
chr3 62307666 62307666 1 + G T UCEC 62307664 + 62307644 62307684 41 TAAATTGGGTGATCAACACACAGAAAAGGCATCTCAACTCC TAAATTGGGTGATCAACACACATAAAAGGCATCTCAACTCC < 41bp 0.797259898397121 0.495940057397924 0.32180807 0.14769426 prediction 0.594519796794242 Functional Loss - C3orf14 ENSG00000114405 CDS Human protein_coding chr3:62307664 chr3:62307666 stopgain 0.979 0 23 hm5C_associated_SNPs_54990 0 0 1 0 1 C3orf14 chr3:62307728 5'GT 62307728 Upstream 63bp
chr7 1024635 1024635 1 + G C ESCA 1024634 + 1024614 1024654 41 GAGGGCTGCCCGCCAGTTCACGGTGCGTGCCCTGCACAGCC GAGGGCTGCCCGCCAGTTCACCGTGCGTGCCCTGCACAGCC < 41bp 0.797246363518335 0.49609667827655 0.919173 0.87009645 prediction 0.594492727036671 Functional Loss - CYP2W1 ENSG00000073067 CDS Human protein_coding chr7:1024634 chr7:1024635 synonymous SNV . 0 22 hm5C_associated_SNPs_54992 0 0 1 0 1 CYP2W1 chr7:1024586 3'AG 1024586 Downstream 50bp
chr11 76572075 76572075 1 + G T BRCA 76572072 + 76572052 76572092 41 GGGGCCCCACGACCTCCACGCTGGACTGGTGCGAGGAGAAC GGGGCCCCACGACCTCCACGCTGTACTGGTGCGAGGAGAAC < 41bp 0.863430498860316 0.566187782965603 0.26934108 0.17775139 prediction 0.594485431789427 Functional Loss - ACER3 ENSG00000078124 CDS Human protein_coding chr11:76572072 chr11:76572075 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_54993 0 0 1 0 2 ACER3 chr11:76572106 5'GT 76572106 Upstream 32bp
chr11 76572075 76572075 1 + G T BRCA 76572072 + 76572052 76572092 41 GGGGCCCCACGACCTCCACGCTGGACTGGTGCGAGGAGAAC GGGGCCCCACGACCTCCACGCTGTACTGGTGCGAGGAGAAC < 41bp 0.863430498860316 0.566187782965603 0.26934108 0.17775139 prediction 0.594485431789427 Functional Loss - ACER3 ENSG00000078124 CDS Human protein_coding chr11:76572072 chr11:76572075 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_54993 0 0 1 0 2 ACER3 chr11:76572123 5'GT 76572123 Upstream 49bp
chrX 35938080 35938080 1 + G T UCEC 35938077 + 35938057 35938097 41 GAAGTTCCTGGACACGATGGCCGGGAGGGTGTACCGCCTCC GAAGTTCCTGGACACGATGGCCGTGAGGGTGTACCGCCTCC < 41bp 0.797234278117876 0.41311302121669 0.8523811 0.37824503 prediction 0.594468556235753 Functional Loss - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35938077 chrX:35938080 nonsynonymous SNV 0.042 4 24 hm5C_associated_SNPs_54995 0 0 0 0 1 CFAP47 chrX:35938165 5'GT 35938165 Upstream 86bp
chr15 90119402 90119402 1 + G T rs200929837 90119399 + 90119379 90119419 41 GTGATGGAGAAGTTGTTGCCCAAGAGAGTCCGGGAAGTCAT GTGATGGAGAAGTTGTTGCCCAATAGAGTCCGGGAAGTCAT < 41bp 0.797222717559733 0.432975616644197 0.46168756 0.3137976 prediction 0.594445435119467 Functional Loss - TICRR ENSG00000140534 CDS Human protein_coding chr15:90119399 chr15:90119402 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_54996 0 0 1 0 1 TICRR chr15:90119471 5'GT 90119471 Upstream 70bp
chr6 24409715 24409715 1 + G T BRCA 24409712 + 24409692 24409732 41 GGAAGAAAACTGAATTATACCAAGAGTTAGGTCTTCAAGCC GGAAGAAAACTGAATTATACCAATAGTTAGGTCTTCAAGCC < 41bp 0.867228091637884 0.570031868750603 0.41871938 0.12695548 prediction 0.594392445774563 Functional Loss - MRS2 ENSG00000124532 CDS Human protein_coding chr6:24409712 chr6:24409715 stopgain 0.997 1 24 hm5C_associated_SNPs_54999 0 0 1 0 2 MRS2 chr6:24409689 3'AG 24409689 Downstream 27bp
chr6 24409715 24409715 1 + G T BRCA 24409712 + 24409692 24409732 41 GGAAGAAAACTGAATTATACCAAGAGTTAGGTCTTCAAGCC GGAAGAAAACTGAATTATACCAATAGTTAGGTCTTCAAGCC < 41bp 0.867228091637884 0.570031868750603 0.41871938 0.12695548 prediction 0.594392445774563 Functional Loss - MRS2 ENSG00000124532 CDS Human protein_coding chr6:24409712 chr6:24409715 stopgain 0.997 1 24 hm5C_associated_SNPs_54999 0 0 1 0 2 MRS2 chr6:24409801 5'GT 24409801 Upstream 87bp
chr16 53500990 53500990 1 + G T GBM 53500988 + 53500968 53501008 41 AGGTCATGCCACCTCAGAACCTGGAAAGGGCAGATGAAATT AGGTCATGCCACCTCAGAACCTTGAAAGGGCAGATGAAATT < 41bp 0.797188958850541 0.482472447948323 0.07374069 0.098804116 prediction 0.594377917701082 Functional Loss - RBL2 ENSG00000103479 CDS Human protein_coding chr16:53500988 chr16:53500990 synonymous SNV . 0 23 hm5C_associated_SNPs_55000 0 0 1 0 2 RBL2 chr16:53500970 3'AG 53500970 Downstream 21bp
chr16 53500990 53500990 1 + G T GBM 53500988 + 53500968 53501008 41 AGGTCATGCCACCTCAGAACCTGGAAAGGGCAGATGAAATT AGGTCATGCCACCTCAGAACCTTGAAAGGGCAGATGAAATT < 41bp 0.797188958850541 0.482472447948323 0.07374069 0.098804116 prediction 0.594377917701082 Functional Loss - RBL2 ENSG00000103479 CDS Human protein_coding chr16:53500988 chr16:53500990 synonymous SNV . 0 23 hm5C_associated_SNPs_55000 0 0 1 0 2 RBL2 chr16:53501081 5'GT 53501081 Upstream 92bp
chr11 6964374 6964374 1 + G T LUSC 6964371 + 6964351 6964391 41 GCAAGGAAGAGTGGGGGCAACTGGACTCTGCTGTAAAGAAC GCAAGGAAGAGTGGGGGCAACTGTACTCTGCTGTAAAGAAC < 41bp 0.865944320286412 0.568755495847852 0.3832796 0.22016111 prediction 0.594377648877119 Functional Loss - ZNF215 ENSG00000149054 CDS Human protein_coding chr11:6964371 chr11:6964374 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_55001 0 0 0 0 2 ZNF215 chr11:6964314 3'AG 6964314 Downstream 61bp
chr11 6964374 6964374 1 + G T LUSC 6964371 + 6964351 6964391 41 GCAAGGAAGAGTGGGGGCAACTGGACTCTGCTGTAAAGAAC GCAAGGAAGAGTGGGGGCAACTGTACTCTGCTGTAAAGAAC < 41bp 0.865944320286412 0.568755495847852 0.3832796 0.22016111 prediction 0.594377648877119 Functional Loss - ZNF215 ENSG00000149054 CDS Human protein_coding chr11:6964371 chr11:6964374 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_55001 0 0 0 0 2 ZNF215 chr11:6964446 5'GT 6964446 Upstream 73bp
chr4 7026977 7026977 1 + G T UCEC 7026974 + 7026954 7026994 41 ATCCAGATGCAGAGCCGAAACAAGAAGTGGGCTCAGGTCAG ATCCAGATGCAGAGCCGAAACAATAAGTGGGCTCAGGTCAG < 41bp 0.884947575329933 0.587760633664252 0.5511798 0.29426342 prediction 0.594373883331363 Functional Loss - TBC1D14 ENSG00000132405 CDS Human protein_coding chr4:7026974 chr4:7026977 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_55002 0 0 1 0 1 TBC1D14 chr4:7026989 5'GT 7026989 Upstream 13bp
chr7 128587110 128587110 1 + G T GBM 128587108 + 128587088 128587128 41 GTTGCCAAGCCTGAGCCTCACAGGTGGGGCCGGGAGGTGGT GTTGCCAAGCCTGAGCCTCACATGTGGGGCCGGGAGGTGGT < 41bp 0.797183853083184 0.479244801246203 0.87256503 0.34631783 prediction 0.594367706166367 Functional Loss - IRF5 ENSG00000128604 CDS Human protein_coding chr7:128587108 chr7:128587110 stopgain 0.987 2 23 hm5C_associated_SNPs_55003 0 0 1 0 2 IRF5 chr7:128587077 3'AG 128587077 Downstream 34bp
chr7 128587110 128587110 1 + G T GBM 128587108 + 128587088 128587128 41 GTTGCCAAGCCTGAGCCTCACAGGTGGGGCCGGGAGGTGGT GTTGCCAAGCCTGAGCCTCACATGTGGGGCCGGGAGGTGGT < 41bp 0.797183853083184 0.479244801246203 0.87256503 0.34631783 prediction 0.594367706166367 Functional Loss - IRF5 ENSG00000128604 CDS Human protein_coding chr7:128587108 chr7:128587110 stopgain 0.987 2 23 hm5C_associated_SNPs_55003 0 0 1 0 2 IRF5 chr7:128587110 5'GT 128587110 Upstream 1bp
chr9 135926223 135926223 1 + G T SARC 135926221 + 135926201 135926241 41 GAGAATCTGATTGGCCTGAGCAGAGCCCGGCGCCCCCACAA GAGAATCTGATTGGCCTGAGCATAGCCCGGCGCCCCCACAA < 41bp 0.797181204608428 0.457831727428144 0.7490083 0.07402295 prediction 0.594362409216856 Functional Loss - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135926221 chr9:135926223 nonsynonymous SNV 0.984 4 23 hm5C_associated_SNPs_55004 0 0 1 0 1 GTF3C5 chr9:135926170 3'AG 135926170 Downstream 54bp
chr1 114440511 114440511 1 + G T SARC 114440509 + 114440489 114440529 41 GCCGGGCAGGGCCTGACATACAGCTTCAGTACACTGAGGAC GCCGGGCAGGGCCTGACATACATCTTCAGTACACTGAGGAC < 41bp 0.797154549471257 0.477965061139308 0.14651394 0.04965639 prediction 0.594309098942515 Functional Loss - AP4B1 ENSG00000134262 CDS Human protein_coding chr1:114440509 chr1:114440511 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_55007 0 0 0 0 1 AP4B1 chr1:114440490 3'AG 114440490 Downstream 22bp
chr16 25235883 25235883 1 + G T LUAD 25235880 + 25235860 25235900 41 TCCATCGGCTTTGCCGTCACCGTGGATATCCTGGCTGGGTG TCCATCGGCTTTGCCGTCACCGTTGATATCCTGGCTGGGTG < 41bp 0.797137775719613 0.419243734735106 0.8587811 0.38501745 prediction 0.594275551439226 Functional Loss - AQP8 ENSG00000103375 CDS Human protein_coding chr16:25235880 chr16:25235883 synonymous SNV . 0 24 hm5C_associated_SNPs_55010 0 0 0 0 1 AQP8 chr16:25235897 5'GT 25235897 Upstream 15bp
chr10 94828140 94828140 1 + G T SARC 94828138 + 94828118 94828158 41 CCGGGACACGCACGAGACGGCTGCGGTGTACCGCAGCCCTC CCGGGACACGCACGAGACGGCTTCGGTGTACCGCAGCCCTC < 41bp 0.797117741937949 0.472398632998362 0.43559265 0.2628436 prediction 0.594235483875898 Functional Loss - CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94828138 chr10:94828140 nonsynonymous SNV 0.757 0 23 hm5C_associated_SNPs_55012 0 0 0 0 1 CYP26C1 chr10:94828077 3'AG 94828077 Downstream 64bp
chr12 123238274 123238274 1 + G T BLCA 123238272 + 123238252 123238292 41 GCTGCTGACATTTCTGAATCCAGCGGGGCTGACTGCAAAGG GCTGCTGACATTTCTGAATCCATCGGGGCTGACTGCAAAGG < 41bp 0.84106115469034 0.543947410497592 0.41977373 0.19476283 prediction 0.594227488385496 Functional Loss - DENR ENSG00000139726 CDS Human protein_coding chr12:123238272 chr12:123238274 nonsynonymous SNV 0.994 0 23 hm5C_associated_SNPs_55014 0 0 1 0 1 DENR chr12:123238240 3'AG 123238240 Downstream 35bp
chr1 226789759 226789759 1 + G T rs188971820 226789756 + 226789736 226789776 41 CTGTGAGCCCACGGGAGCCGCTGGGGAGATCCAGGGGGGCC CTGTGAGCCCACGGGAGCCGCTGTGGAGATCCAGGGGGGCC < 41bp 0.869029325614574 0.571924210630688 0.8858041 0.3852052 prediction 0.594210229967771 Functional Loss - STUM ENSG00000203685 UTR3 Human protein_coding chr1:226789756 chr1:226789759 . . 0 24 hm5C_associated_SNPs_55015 0 0 0 0 1 STUM chr1:226789707 3'AG 226789707 Downstream 53bp
chr16 31409208 31409208 1 + G T LUAD 31409205 + 31409185 31409225 41 GGCTCGCGCTGGGAGATCATCCAGACAGTCCCCGACGCCAC GGCTCGCGCTGGGAGATCATCCATACAGTCCCCGACGCCAC < 41bp 0.797099944286166 0.409756147131702 0.4208835 0.062057614 prediction 0.594199888572332 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31409205 chr16:31409208 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_55016 0 0 0 0 2 ITGAD chr16:31409116 3'AG 31409116 Downstream 93bp
chr16 31409208 31409208 1 + G T LUAD 31409205 + 31409185 31409225 41 GGCTCGCGCTGGGAGATCATCCAGACAGTCCCCGACGCCAC GGCTCGCGCTGGGAGATCATCCATACAGTCCCCGACGCCAC < 41bp 0.797099944286166 0.409756147131702 0.4208835 0.062057614 prediction 0.594199888572332 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31409205 chr16:31409208 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_55016 0 0 0 0 2 ITGAD chr16:31409230 5'GT 31409230 Upstream 23bp
chrX 151908860 151908860 1 + G T LUAD 151908858 + 151908838 151908878 41 GACTGTACAGAGACACTGGTCTGGTGAAGATGTCCAGGAAA GACTGTACAGAGACACTGGTCTTGTGAAGATGTCCAGGAAA < 41bp 0.814523240517972 0.517423319445544 0.4485419 0.26860753 prediction 0.594199842144855 Functional Loss - CSAG1 ENSG00000198930 CDS Human protein_coding chrX:151908858 chrX:151908860 synonymous SNV . 0 23 hm5C_associated_SNPs_55017 0 0 0 0 2 CSAG1 chrX:151908771 3'AG 151908771 Downstream 90bp
chrX 151908860 151908860 1 + G T LUAD 151908858 + 151908838 151908878 41 GACTGTACAGAGACACTGGTCTGGTGAAGATGTCCAGGAAA GACTGTACAGAGACACTGGTCTTGTGAAGATGTCCAGGAAA < 41bp 0.814523240517972 0.517423319445544 0.4485419 0.26860753 prediction 0.594199842144855 Functional Loss - CSAG1 ENSG00000198930 CDS Human protein_coding chrX:151908858 chrX:151908860 synonymous SNV . 0 23 hm5C_associated_SNPs_55017 0 0 0 0 2 CSAG1 chrX:151908778 3'AG 151908778 Downstream 83bp
chr16 1824320 1824320 1 + G T UCEC 1824317 + 1824297 1824337 41 TTGCTGCTGCTGCTGGAGCCCGAGGAGTTTCTGCAGGGCGT TTGCTGCTGCTGCTGGAGCCCGATGAGTTTCTGCAGGGCGT < 41bp 0.797098564032117 0.415548188509507 0.8925929 0.7456445 prediction 0.594197128064233 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1824317 chr16:1824320 nonsynonymous SNV 0.044 0 24 hm5C_associated_SNPs_55018 0 0 1 0 2 EME2 chr16:1824261 3'AG 1824261 Downstream 60bp
chr16 1824320 1824320 1 + G T UCEC 1824317 + 1824297 1824337 41 TTGCTGCTGCTGCTGGAGCCCGAGGAGTTTCTGCAGGGCGT TTGCTGCTGCTGCTGGAGCCCGATGAGTTTCTGCAGGGCGT < 41bp 0.797098564032117 0.415548188509507 0.8925929 0.7456445 prediction 0.594197128064233 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1824317 chr16:1824320 nonsynonymous SNV 0.044 0 24 hm5C_associated_SNPs_55018 0 0 1 0 2 EME2 chr16:1824353 5'GT 1824353 Upstream 34bp
chr5 6750512 6750512 1 + G T LUAD 6750509 + 6750489 6750529 41 AGCAGACGCAGAACCGAGAGCCCGAGTCTCCCTATGGCCAG AGCAGACGCAGAACCGAGAGCCCTAGTCTCCCTATGGCCAG < 41bp 0.797096897779195 0.414163964779348 0.12116581 0.06632891 prediction 0.594193795558391 Functional Loss - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6750509 chr5:6750512 stopgain 0.001 0 24 hm5C_associated_SNPs_55019 0 0 1 0 1 PAPD7 chr5:6750444 3'AG 6750444 Downstream 69bp
chr7 116435746 116435746 1 + G T LUAD 116435743 + 116435723 116435763 41 GCTCCTCTGGGAGCTGATGACAAGAGGAGCCCCACCTTATC GCTCCTCTGGGAGCTGATGACAATAGGAGCCCCACCTTATC < 41bp 0.842594249492958 0.545509544454019 0.8386598 0.26880682 prediction 0.594169410077878 Functional Loss - MET ENSG00000105976 CDS Human protein_coding chr7:116435743 chr7:116435746 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55021 0 0 1 0 2 MET chr7:116435709 3'AG 116435709 Downstream 38bp
chr7 116435746 116435746 1 + G T LUAD 116435743 + 116435723 116435763 41 GCTCCTCTGGGAGCTGATGACAAGAGGAGCCCCACCTTATC GCTCCTCTGGGAGCTGATGACAATAGGAGCCCCACCTTATC < 41bp 0.842594249492958 0.545509544454019 0.8386598 0.26880682 prediction 0.594169410077878 Functional Loss - MET ENSG00000105976 CDS Human protein_coding chr7:116435743 chr7:116435746 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55021 0 0 1 0 2 MET chr7:116435845 5'GT 116435845 Upstream 100bp
chr16 76350360 76350360 1 + A C LGG 76350356 + 76350336 76350376 41 GCCTTGCCTCAGGCATCCTTCAGCAGTTCTTCCGAGCTCTC GCCTTGCCTCAGGCATCCTTCAGCCGTTCTTCCGAGCTCTC < 41bp 0.797082564912383 0.395531175034614 0.29342514 0.4400454 prediction 0.594165129824766 Functional Loss - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76350356 chr16:76350360 nonsynonymous SNV 0.973 4 25 hm5C_associated_SNPs_55023 0 0 0 0 2 CNTNAP4 chr16:76350310 3'AG 76350310 Downstream 51bp
chr16 76350360 76350360 1 + A C LGG 76350356 + 76350336 76350376 41 GCCTTGCCTCAGGCATCCTTCAGCAGTTCTTCCGAGCTCTC GCCTTGCCTCAGGCATCCTTCAGCCGTTCTTCCGAGCTCTC < 41bp 0.797082564912383 0.395531175034614 0.29342514 0.4400454 prediction 0.594165129824766 Functional Loss - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76350356 chr16:76350360 nonsynonymous SNV 0.973 4 25 hm5C_associated_SNPs_55023 0 0 0 0 2 CNTNAP4 chr16:76350420 5'GT 76350420 Upstream 61bp
chr17 61907278 61907278 1 + G T UCEC 61907276 + 61907256 61907296 41 TCCTATGTGGGGGAAGTAGTCCGGGCCATGGATAAGAAGAA TCCTATGTGGGGGAAGTAGTCCTGGCCATGGATAAGAAGAA < 41bp 0.797079925205998 0.457213078454468 0.90476626 0.41054833 prediction 0.594159850411996 Functional Loss - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61907276 chr17:61907278 nonsynonymous SNV 0.965 3 23 hm5C_associated_SNPs_55024 0 0 1 0 2 PSMC5 chr17:61907212 3'AG 61907212 Downstream 67bp
chr17 61907278 61907278 1 + G T UCEC 61907276 + 61907256 61907296 41 TCCTATGTGGGGGAAGTAGTCCGGGCCATGGATAAGAAGAA TCCTATGTGGGGGAAGTAGTCCTGGCCATGGATAAGAAGAA < 41bp 0.797079925205998 0.457213078454468 0.90476626 0.41054833 prediction 0.594159850411996 Functional Loss - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61907276 chr17:61907278 nonsynonymous SNV 0.965 3 23 hm5C_associated_SNPs_55024 0 0 1 0 2 PSMC5 chr17:61907309 5'GT 61907309 Upstream 32bp
chr1 113638562 113638562 1 + G T UCEC 113638560 + 113638540 113638580 41 TGTATGGCTTGCGAATGTTACAGCAGCTCTATGTGAGCCAG TGTATGGCTTGCGAATGTTACATCAGCTCTATGTGAGCCAG < 41bp 0.835376466508253 0.53829876516014 0.7944559 0.17024484 prediction 0.594155402696225 Functional Loss - LRIG2 ENSG00000198799 CDS Human protein_coding chr1:113638560 chr1:113638562 nonsynonymous SNV 0.994 1 23 hm5C_associated_SNPs_55025 0 0 1 0 2 LRIG2 chr1:113638496 3'AG 113638496 Downstream 67bp
chr1 113638562 113638562 1 + G T UCEC 113638560 + 113638540 113638580 41 TGTATGGCTTGCGAATGTTACAGCAGCTCTATGTGAGCCAG TGTATGGCTTGCGAATGTTACATCAGCTCTATGTGAGCCAG < 41bp 0.835376466508253 0.53829876516014 0.7944559 0.17024484 prediction 0.594155402696225 Functional Loss - LRIG2 ENSG00000198799 CDS Human protein_coding chr1:113638560 chr1:113638562 nonsynonymous SNV 0.994 1 23 hm5C_associated_SNPs_55025 0 0 1 0 2 LRIG2 chr1:113638639 5'GT 113638639 Upstream 78bp
chr6 138726413 138726413 1 + G T UCEC 138726410 + 138726390 138726430 41 AGCTACATTCAAGGCAAAAACGAGAAAGGTAAAAGCAGTTT AGCTACATTCAAGGCAAAAACGATAAAGGTAAAAGCAGTTT < 41bp 0.879915369882211 0.582837819880215 0.25133204 0.15505785 prediction 0.594155100003994 Functional Loss - HEBP2 ENSG00000051620 CDS Human protein_coding chr6:138726410 chr6:138726413 nonsynonymous SNV 0.939 0 24 hm5C_associated_SNPs_55026 0 0 1 0 1 HEBP2 chr6:138726417 5'GT 138726417 Upstream 5bp
chr2 135922233 135922233 1 + G T rs144455066 135922230 + 135922210 135922250 41 GCAGGAAGAGGACATGCTGGCAGGATCATTCACAAGCTGTT GCAGGAAGAGGACATGCTGGCAGTATCATTCACAAGCTGTT < 41bp 0.797026401316444 0.430708890344716 0.87794036 0.36800054 prediction 0.594052802632888 Functional Loss - RAB3GAP1 ENSG00000115839 CDS Human protein_coding chr2:135922230 chr2:135922233 nonsynonymous SNV 0.981 1 24 hm5C_associated_SNPs_55030 1 0 1 0 1 RAB3GAP1 chr2:135922164 3'AG 135922164 Downstream 70bp
chr10 101451204 101451204 1 + G T BRCA 101451201 + 101451181 101451221 41 GGAGAAGGACAGTAGGGATACTGGATATGGGAGGAGCCTCT GGAGAAGGACAGTAGGGATACTGTATATGGGAGGAGCCTCT < 41bp 0.880871631122785 0.583846230218182 0.41109085 0.20896122 prediction 0.594050801809206 Functional Loss - ENTPD7 ENSG00000198018 CDS Human protein_coding chr10:101451201 chr10:101451204 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_55032 0 0 1 0 2 ENTPD7 chr10:101451142 3'AG 101451142 Downstream 63bp
chr10 101451204 101451204 1 + G T BRCA 101451201 + 101451181 101451221 41 GGAGAAGGACAGTAGGGATACTGGATATGGGAGGAGCCTCT GGAGAAGGACAGTAGGGATACTGTATATGGGAGGAGCCTCT < 41bp 0.880871631122785 0.583846230218182 0.41109085 0.20896122 prediction 0.594050801809206 Functional Loss - ENTPD7 ENSG00000198018 CDS Human protein_coding chr10:101451201 chr10:101451204 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_55032 0 0 1 0 2 ENTPD7 chr10:101451275 5'GT 101451275 Upstream 72bp
chr17 32959770 32959770 1 + A C UCEC 32959766 + 32959746 32959786 41 GTTTGTGAGTGGAAAAGAGTCTCGAGGGTCCATGAACGCCA GTTTGTGAGTGGAAAAGAGTCTCGCGGGTCCATGAACGCCA < 41bp 0.910644797157819 0.613631312098393 0.22405484 0.037611425 prediction 0.59402697011885 Functional Loss - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32959766 chr17:32959770 synonymous SNV . 0 25 hm5C_associated_SNPs_55034 0 0 1 0 1 TMEM132E chr17:32959723 3'AG 32959723 Downstream 48bp
chr20 34207164 34207164 1 + A T UCEC 34207160 + 34207140 34207180 41 ACATCCCACGATTACGCAGACAGGAACACTGCCTACTTCTG ACATCCCACGATTACGCAGACAGGTACACTGCCTACTTCTG < 41bp 0.797010914229425 0.494801193299019 0.50695837 0.37003815 prediction 0.59402182845885 Functional Loss - SPAG4 ENSG00000061656 CDS Human protein_coding chr20:34207160 chr20:34207164 nonsynonymous SNV 0.822 1 25 hm5C_associated_SNPs_55035 0 0 1 0 2 SPAG4 chr20:34207117 3'AG 34207117 Downstream 48bp
chr20 34207164 34207164 1 + A T UCEC 34207160 + 34207140 34207180 41 ACATCCCACGATTACGCAGACAGGAACACTGCCTACTTCTG ACATCCCACGATTACGCAGACAGGTACACTGCCTACTTCTG < 41bp 0.797010914229425 0.494801193299019 0.50695837 0.37003815 prediction 0.59402182845885 Functional Loss - SPAG4 ENSG00000061656 CDS Human protein_coding chr20:34207160 chr20:34207164 nonsynonymous SNV 0.822 1 25 hm5C_associated_SNPs_55035 0 0 1 0 2 SPAG4 chr20:34207232 5'GT 34207232 Upstream 69bp
chr8 37633454 37633454 1 + G T ESCA 37633451 + 37633431 37633471 41 GTCAGCTGTTATTGTCCCTCCGGGAGGAGCTGTGTAAAAAG GTCAGCTGTTATTGTCCCTCCGGTAGGAGCTGTGTAAAAAG < 41bp 0.886763467683008 0.589764045197873 0.7784312 0.4155228 prediction 0.593998844970271 Functional Loss - PLPBP ENSG00000147471 CDS Human protein_coding chr8:37633451 chr8:37633454 stopgain 0.783 0 24 hm5C_associated_SNPs_55037 0 0 0 0 2 PLPBP chr8:37633436 3'AG 37633436 Downstream 19bp
chr8 37633454 37633454 1 + G T ESCA 37633451 + 37633431 37633471 41 GTCAGCTGTTATTGTCCCTCCGGGAGGAGCTGTGTAAAAAG GTCAGCTGTTATTGTCCCTCCGGTAGGAGCTGTGTAAAAAG < 41bp 0.886763467683008 0.589764045197873 0.7784312 0.4155228 prediction 0.593998844970271 Functional Loss - PLPBP ENSG00000147471 CDS Human protein_coding chr8:37633451 chr8:37633454 stopgain 0.783 0 24 hm5C_associated_SNPs_55037 0 0 0 0 2 PLPBP chr8:37633534 5'GT 37633534 Upstream 81bp
chr22 29881804 29881804 1 + G T UCEC 29881801 + 29881781 29881821 41 TACCAGGACCTGCTCAATGTCAAGATGGCTCTGGATATAGA TACCAGGACCTGCTCAATGTCAATATGGCTCTGGATATAGA < 41bp 0.796992571616125 0.42027736209941 0.5472428 0.07326782 prediction 0.59398514323225 Functional Loss - NEFH ENSG00000100285 CDS Human protein_coding chr22:29881801 chr22:29881804 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55038 0 0 0 0 2 NEFH chr22:29881712 3'AG 29881712 Downstream 93bp
chr22 29881804 29881804 1 + G T UCEC 29881801 + 29881781 29881821 41 TACCAGGACCTGCTCAATGTCAAGATGGCTCTGGATATAGA TACCAGGACCTGCTCAATGTCAATATGGCTCTGGATATAGA < 41bp 0.796992571616125 0.42027736209941 0.5472428 0.07326782 prediction 0.59398514323225 Functional Loss - NEFH ENSG00000100285 CDS Human protein_coding chr22:29881801 chr22:29881804 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55038 0 0 0 0 2 NEFH chr22:29881836 5'GT 29881836 Upstream 33bp
chr10 29578131 29578131 1 + G T LUAD 29578129 + 29578109 29578149 41 CTCAACTGAGAAGTCAGCCTCTGGGGCAGGCACCAGGAATC CTCAACTGAGAAGTCAGCCTCTTGGGCAGGCACCAGGAATC < 41bp 0.837472494964507 0.540515610623947 0.8645874 0.4718895 prediction 0.593913768681119 Functional Loss - LYZL1 ENSG00000120563 CDS Human protein_coding chr10:29578129 chr10:29578131 nonsynonymous SNV 0.009 2 23 hm5C_associated_SNPs_55040 0 0 0 0 1 LYZL1 chr10:29578159 5'GT 29578159 Upstream 29bp
chr16 1604819 1604819 1 + G T UCEC 1604817 + 1604797 1604837 41 ATCGGGCTCGTGACTTTCTACAGAATTGGCCCATACACCAA ATCGGGCTCGTGACTTTCTACATAATTGGCCCATACACCAA < 41bp 0.811973261699486 0.515021045544565 0.061163694 0.037831068 prediction 0.593904432309843 Functional Loss - TMEM204 ENSG00000131634 CDS Human protein_coding chr16:1604817 chr16:1604819 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_55041 0 0 0 0 1 TMEM204 chr16:1604783 3'AG 1604783 Downstream 37bp
chr19 40006584 40006584 1 + G T CESC 40006582 + 40006562 40006602 41 TCCCGTCGGCCATCTCCTTACAGAATTGTACGGAAACCTTC TCCCGTCGGCCATCTCCTTACATAATTGTACGGAAACCTTC < 41bp 0.826018846412169 0.52906977405966 0.43414432 0.42907494 prediction 0.593898144705017 Functional Loss - SELENOV ENSG00000186838 CDS Human protein_coding chr19:40006582 chr19:40006584 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_55042 0 0 0 0 1 SELENOV chr19:40006661 5'GT 40006661 Upstream 78bp
chr18 66506000 66506000 1 + G T LUAD 66505997 + 66505977 66506017 41 GTGAGGAGATGAAGCCCAATCTAGATGGTGTTGATTTATTC GTGAGGAGATGAAGCCCAATCTATATGGTGTTGATTTATTC < 41bp 0.796944595730234 0.454514669318321 0.161688 0.24084482 prediction 0.593889191460469 Functional Loss - CCDC102B ENSG00000150636 CDS Human protein_coding chr18:66505997 chr18:66506000 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_55043 0 0 0 0 1 CCDC102B chr18:66505943 3'AG 66505943 Downstream 58bp
chr3 152174130 152174130 1 + G T LUSC 152174128 + 152174108 152174148 41 TGCCACAAGTGTTCCCTTCGCTGCAACAGCCACAGCCAACC TGCCACAAGTGTTCCCTTCGCTTCAACAGCCACAGCCAACC < 41bp 0.800088270450554 0.503146870150157 0.102476 0.04851851 prediction 0.593882800600794 Functional Loss - MBNL1 ENSG00000152601 CDS Human protein_coding chr3:152174128 chr3:152174130 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_55044 0 0 1 0 2 MBNL1 chr3:152174056 3'AG 152174056 Downstream 75bp
chr3 152174130 152174130 1 + G T LUSC 152174128 + 152174108 152174148 41 TGCCACAAGTGTTCCCTTCGCTGCAACAGCCACAGCCAACC TGCCACAAGTGTTCCCTTCGCTTCAACAGCCACAGCCAACC < 41bp 0.800088270450554 0.503146870150157 0.102476 0.04851851 prediction 0.593882800600794 Functional Loss - MBNL1 ENSG00000152601 CDS Human protein_coding chr3:152174128 chr3:152174130 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_55044 0 0 1 0 2 MBNL1 chr3:152174150 5'GT 152174150 Upstream 21bp
chr17 78178964 78178964 1 + G T UCEC 78178961 + 78178941 78178981 41 GCGGTTGGGAAGATCCTGAGCGAGAAACTGTGCCTCCTCCA GCGGTTGGGAAGATCCTGAGCGATAAACTGTGCCTCCTCCA < 41bp 0.796928761360066 0.422111154605547 0.9204668 0.28221512 prediction 0.593857522720131 Functional Loss - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78178961 chr17:78178964 nonsynonymous SNV 0.588 0 24 hm5C_associated_SNPs_55046 0 0 0 0 1 CARD14 chr17:78179004 5'GT 78179004 Upstream 41bp
chr19 6750390 6750390 1 + A T rs534886687 6750386 + 6750366 6750406 41 GCCCGGCCTCCCGACCCCCCCGCTAGCGCCCCGCCAGACAG GCCCGGCCTCCCGACCCCCCCGCTTGCGCCCCGCCAGACAG < 41bp 0.796916882238335 0.479532571139005 0.20884046 0.038030863 prediction 0.59383376447667 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6750386 chr19:6750390 nonsynonymous SNV 0.018 2 25 hm5C_associated_SNPs_55047 0 0 1 0 2 TRIP10 chr19:6750303 3'AG 6750303 Downstream 88bp
chr19 6750390 6750390 1 + A T rs534886687 6750386 + 6750366 6750406 41 GCCCGGCCTCCCGACCCCCCCGCTAGCGCCCCGCCAGACAG GCCCGGCCTCCCGACCCCCCCGCTTGCGCCCCGCCAGACAG < 41bp 0.796916882238335 0.479532571139005 0.20884046 0.038030863 prediction 0.59383376447667 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6750386 chr19:6750390 nonsynonymous SNV 0.018 2 25 hm5C_associated_SNPs_55047 0 0 1 0 2 TRIP10 chr19:6750442 5'GT 6750442 Upstream 53bp
chr9 140058232 140058232 1 + G T LUSC 140058229 + 140058209 140058249 41 AGGGGTCTTCATGCTGGTAGCTGGGGGCATCGTGGCCGGGA AGGGGTCTTCATGCTGGTAGCTGTGGGCATCGTGGCCGGGA < 41bp 0.79690206884433 0.43073265897167 0.929006 0.8135425 prediction 0.593804137688659 Functional Loss - GRIN1 ENSG00000176884 CDS Human protein_coding chr9:140058229 chr9:140058232 nonsynonymous SNV 0.972 3 24 hm5C_associated_SNPs_55048 0 0 0 0 1 GRIN1 chr9:140058211 3'AG 140058211 Downstream 22bp
chr1 220298633 220298633 1 + G T UCEC 220298630 + 220298610 220298650 41 GAACAACACGGCAGTGATATCTGGTGGACTCTTCCCCCTGA GAACAACACGGCAGTGATATCTGTTGGACTCTTCCCCCTGA < 41bp 0.88190562796858 0.58503679290037 0.49223217 0.06894931 prediction 0.59373767013642 Functional Loss - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220298630 chr1:220298633 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_55054 0 0 1 0 2 IARS2 chr1:220298579 3'AG 220298579 Downstream 55bp
chr1 220298633 220298633 1 + G T UCEC 220298630 + 220298610 220298650 41 GAACAACACGGCAGTGATATCTGGTGGACTCTTCCCCCTGA GAACAACACGGCAGTGATATCTGTTGGACTCTTCCCCCTGA < 41bp 0.88190562796858 0.58503679290037 0.49223217 0.06894931 prediction 0.59373767013642 Functional Loss - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220298630 chr1:220298633 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_55054 0 0 1 0 2 IARS2 chr1:220298681 5'GT 220298681 Upstream 49bp
chr6 2900782 2900782 1 - C A UCEC 2900785 - 2900765 2900805 41 GCCTTTTAAAGATACTGTGTCAAGATAACCCTTCGCACAAC GCCTTTTAAAGATACTGTGTCAATATAACCCTTCGCACAAC < 41bp 0.796859903415368 0.424435887849296 0.50375384 0.041150004 prediction 0.593719806830737 Functional Loss - SERPINB9 ENSG00000170542 CDS Human protein_coding chr6:2900785 chr6:2900782 nonsynonymous SNV 0.167 2 24 hm5C_associated_SNPs_55055 0 0 1 0 1 LOC101927730 chr6:2900855 3'AG 2900855 Downstream 74bp
chr11 36103304 36103304 1 + G T LUAD 36103301 + 36103281 36103321 41 GCAATGGGTTTGAGGACTGTCCCGATGGCAGCGATGAAGAG GCAATGGGTTTGAGGACTGTCCCTATGGCAGCGATGAAGAG < 41bp 0.796859467732484 0.438268017438329 0.21115395 0.1545721 prediction 0.593718935464967 Functional Loss - LDLRAD3 ENSG00000179241 CDS Human protein_coding chr11:36103301 chr11:36103304 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_55057 0 0 0 0 1 LDLRAD3 chr11:36103328 5'GT 36103328 Upstream 25bp
chr2 143798061 143798061 1 + A T LUSC 143798057 + 143798037 143798077 41 CTGTTTTGCTAACTGGCTATCTGGAATACCTGATCAAGCAT CTGTTTTGCTAACTGGCTATCTGGTATACCTGATCAAGCAT < 41bp 0.816781953198442 0.519927081043206 0.36599642 0.27789426 prediction 0.593709744310472 Functional Loss - KYNU ENSG00000115919 CDS Human protein_coding chr2:143798057 chr2:143798061 nonsynonymous SNV 0.982 3 25 hm5C_associated_SNPs_55058 0 0 0 0 1 KYNU chr2:143797997 3'AG 143797997 Downstream 65bp
chr11 44939590 44939590 1 + G T LIHC 44939588 + 44939568 44939608 41 GCCATCCTGGCCTTCATCTTCAGGGAAAATGTACGTATCAG GCCATCCTGGCCTTCATCTTCATGGAAAATGTACGTATCAG < 41bp 0.796851191071054 0.462943657647402 0.8937112 0.41177717 prediction 0.593702382142107 Functional Loss - TSPAN18 ENSG00000157570 CDS Human protein_coding chr11:44939588 chr11:44939590 nonsynonymous SNV 0.983 4 23 hm5C_associated_SNPs_55059 0 0 0 0 2 TSPAN18 chr11:44939523 3'AG 44939523 Downstream 68bp
chr11 44939590 44939590 1 + G T LIHC 44939588 + 44939568 44939608 41 GCCATCCTGGCCTTCATCTTCAGGGAAAATGTACGTATCAG GCCATCCTGGCCTTCATCTTCATGGAAAATGTACGTATCAG < 41bp 0.796851191071054 0.462943657647402 0.8937112 0.41177717 prediction 0.593702382142107 Functional Loss - TSPAN18 ENSG00000157570 CDS Human protein_coding chr11:44939588 chr11:44939590 nonsynonymous SNV 0.983 4 23 hm5C_associated_SNPs_55059 0 0 0 0 2 TSPAN18 chr11:44939597 5'GT 44939597 Upstream 8bp
chr19 39915897 39915897 1 + G T STAD 39915895 + 39915875 39915915 41 CAGGAATCTATGGGCCTTCACAGGGCCCAGGGGGCTCCTGA CAGGAATCTATGGGCCTTCACATGGCCCAGGGGGCTCCTGA < 41bp 0.796850522414011 0.457159667029042 0.9383207 0.54363096 prediction 0.593701044828022 Functional Loss - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39915895 chr19:39915897 nonsynonymous SNV 0.937 1 23 hm5C_associated_SNPs_55060 0 0 1 0 1 PLEKHG2 chr19:39915878 3'AG 39915878 Downstream 20bp
chr1 161188716 161188716 1 + G T LUAD 161188713 + 161188693 161188733 41 AGACTTACGAGACTCTGAAGCATGAGAAACCACCACAGTAG AGACTTACGAGACTCTGAAGCATTAGAAACCACCACAGTAG < 41bp 0.796844743578797 0.426327553481774 0.36410785 0.10659522 prediction 0.593689487157593 Functional Loss - FCER1G ENSG00000158869 CDS Human protein_coding chr1:161188713 chr1:161188716 stopgain 0.998 0 24 hm5C_associated_SNPs_55061 0 0 1 0 1 FCER1G chr1:161188671 3'AG 161188671 Downstream 46bp
chr6 160183048 160183048 1 - C A LUAD 160183051 - 160183031 160183071 41 AAGCTCCTCCTCGCAGCCCACAGGCCTGCCGCGGGCGGGAC AAGCTCCTCCTCGCAGCCCACAGTCCTGCCGCGGGCGGGAC < 41bp 0.796832651395595 0.42903052019004 0.8536284 0.41220182 prediction 0.593665302791189 Functional Loss - SOD2-OT1 ENSG00000112096;ENSG00000120437 UTR5 Human other chr6:160183051 chr6:160183048 . . 0 24 hm5C_associated_SNPs_55063 0 0 0 0 1 SOD2-OT1 chr6:160183026 5'GT 160183026 Upstream 23bp
chr18 8786057 8786057 1 + G T UCEC 8786054 + 8786034 8786074 41 CAGACGGGGACACCGGGAGCCACGGGCTGGGAGGCCAGACC CAGACGGGGACACCGGGAGCCACTGGCTGGGAGGCCAGACC < 41bp 0.796828373516911 0.420130822146565 0.9041811 0.5246023 prediction 0.593656747033821 Functional Loss - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8786054 chr18:8786057 nonsynonymous SNV 0.067 2 24 hm5C_associated_SNPs_55064 0 0 1 0 1 MTCL1 chr18:8786089 5'GT 8786089 Upstream 33bp
chr20 61945437 61945437 1 + G T LUAD 61945434 + 61945414 61945454 41 CTTCTCCTAGGTCTCTGTGCCAGGAGCCAGGAGCCACGTGA CTTCTCCTAGGTCTCTGTGCCAGTAGCCAGGAGCCACGTGA < 41bp 0.796810744671755 0.422744411231969 0.91125417 0.30376428 prediction 0.593621489343511 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61945434 chr20:61945437 nonsynonymous SNV 0.005 3 24 hm5C_associated_SNPs_55066 0 0 0 0 1 COL20A1 chr20:61945424 3'AG 61945424 Downstream 14bp
chr10 22634702 22634702 1 + G T UCEC 22634700 + 22634680 22634720 41 CCAGTTCGTGCAGATGGTGGCGGAGCTGGCGACTAGACCCC CCAGTTCGTGCAGATGGTGGCGTAGCTGGCGACTAGACCCC < 41bp 0.796804833932475 0.468943350807716 0.89425635 0.34191647 prediction 0.593609667864951 Functional Loss - SPAG6 ENSG00000077327 CDS Human protein_coding chr10:22634700 chr10:22634702 stopgain 0.999 0 23 hm5C_associated_SNPs_55067 0 0 0 0 2 SPAG6 chr10:22634652 3'AG 22634652 Downstream 51bp
chr10 22634702 22634702 1 + G T UCEC 22634700 + 22634680 22634720 41 CCAGTTCGTGCAGATGGTGGCGGAGCTGGCGACTAGACCCC CCAGTTCGTGCAGATGGTGGCGTAGCTGGCGACTAGACCCC < 41bp 0.796804833932475 0.468943350807716 0.89425635 0.34191647 prediction 0.593609667864951 Functional Loss - SPAG6 ENSG00000077327 CDS Human protein_coding chr10:22634700 chr10:22634702 stopgain 0.999 0 23 hm5C_associated_SNPs_55067 0 0 0 0 2 SPAG6 chr10:22634747 5'GT 22634747 Upstream 46bp
chr1 45190265 45190265 1 + G T COAD 45190262 + 45190242 45190282 41 GAGGAGCTGCTGTACCTGCGCGTGGTGCGTGGCCTAATGGC GAGGAGCTGCTGTACCTGCGCGTTGTGCGTGGCCTAATGGC < 41bp 0.79679028517424 0.406952612011028 0.85895896 0.35671866 prediction 0.593580570348481 Functional Loss - C1orf228 ENSG00000198520 CDS Human protein_coding chr1:45190262 chr1:45190265 synonymous SNV . 0 24 hm5C_associated_SNPs_55070 0 0 0 0 1 C1orf228 chr1:45190340 5'GT 45190340 Upstream 76bp
chr20 62658381 62658381 1 + G T LGG 62658379 + 62658359 62658399 41 GAGTGGGTGCAAGACAACATCAGGGCAGCCCAAGATCTGTG GAGTGGGTGCAAGACAACATCATGGCAGCCCAAGATCTGTG < 41bp 0.852966850865329 0.556184907362557 0.89220035 0.36688554 prediction 0.593563887005544 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62658379 chr20:62658381 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_55072 0 0 1 0 1 PRPF6 chr20:62658335 3'AG 62658335 Downstream 47bp
chr19 2994073 2994073 1 + G T UCEC 2994071 + 2994051 2994091 41 CCTTGGCGTCTACAGCATGCCGGCGGGGACAAAAGTGTTCG CCTTGGCGTCTACAGCATGCCGTCGGGGACAAAAGTGTTCG < 41bp 0.796779544852089 0.464207973127545 0.49430418 0.19527018 prediction 0.593559089704178 Functional Loss - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2994071 chr19:2994073 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_55073 0 0 0 0 2 TLE6 chr19:2994017 3'AG 2994017 Downstream 57bp
chr19 2994073 2994073 1 + G T UCEC 2994071 + 2994051 2994091 41 CCTTGGCGTCTACAGCATGCCGGCGGGGACAAAAGTGTTCG CCTTGGCGTCTACAGCATGCCGTCGGGGACAAAAGTGTTCG < 41bp 0.796779544852089 0.464207973127545 0.49430418 0.19527018 prediction 0.593559089704178 Functional Loss - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2994071 chr19:2994073 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_55073 0 0 0 0 2 TLE6 chr19:2994093 5'GT 2994093 Upstream 21bp
chr10 23326279 23326279 1 + G T UCEC 23326277 + 23326257 23326297 41 CGTGGAATGAAGTCATGCTGCAGAATGACTCTCGGAAGGGA CGTGGAATGAAGTCATGCTGCATAATGACTCTCGGAAGGGA < 41bp 0.833706778350165 0.536929023772652 0.18169269 0.0520674 prediction 0.593555509155026 Functional Loss - ARMC3 ENSG00000165309 CDS Human protein_coding chr10:23326277 chr10:23326279 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_55075 0 0 0 0 1 ARMC3 chr10:23326199 3'AG 23326199 Downstream 81bp
chr1 161198843 161198843 1 + G T SARC 161198840 + 161198820 161198860 41 CTTGGAGCCTTCCTCAATCACTGGCGCAACAGATTCCATTG CTTGGAGCCTTCCTCAATCACTGTCGCAACAGATTCCATTG < 41bp 0.796777081580195 0.419571657901563 0.7887439 0.26709813 prediction 0.59355416316039 Functional Loss - TOMM40L ENSG00000158882 CDS Human protein_coding chr1:161198840 chr1:161198843 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_55076 0 0 1 0 1 TOMM40L chr1:161198746 3'AG 161198746 Downstream 98bp
chr10 70730090 70730090 1 + A T LIHC 70730086 + 70730066 70730106 41 AAGAAGCCCAGGAGCTGTCCCAGAATTCAGCTATAAAGCAG AAGAAGCCCAGGAGCTGTCCCAGATTTCAGCTATAAAGCAG < 41bp 0.798206554976264 0.501439455086352 0.24504018 0.18984568 prediction 0.593534199779824 Functional Loss - DDX21 ENSG00000165732 CDS Human protein_coding chr10:70730086 chr10:70730090 nonsynonymous SNV 0.561 2 25 hm5C_associated_SNPs_55079 0 0 1 0 1 DDX21 chr10:70730106 5'GT 70730106 Upstream 17bp
chr6 28331591 28331591 1 + G T LUSC 28331589 + 28331569 28331609 41 ACCATGGCAGCCTGGTCTCCCTGGGTAAGACTAAAGGACAC ACCATGGCAGCCTGGTCTCCCTTGGTAAGACTAAAGGACAC < 41bp 0.824038616223944 0.527272198098813 0.63489926 0.13210258 prediction 0.593532836250262 Functional Loss - ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28331589 chr6:28331591 synonymous SNV . 0 23 hm5C_associated_SNPs_55080 0 0 1 0 1 ZKSCAN3 chr6:28331592 5'GT 28331592 Upstream 2bp
chr2 113736901 113736901 1 + A T LUSC 113736897 + 113736877 113736917 41 TCCACGAAGTGACAGTGTGACCCCAGGTGAGTGGTCACCCT TCCACGAAGTGACAGTGTGACCCCTGGTGAGTGGTCACCCT < 41bp 0.797277527624122 0.50051738876184 0.3209005 0.1072306 prediction 0.593520277724565 Functional Loss - IL36G ENSG00000136688 CDS Human protein_coding chr2:113736897 chr2:113736901 synonymous SNV . 0 25 hm5C_associated_SNPs_55081 0 0 0 0 1 IL36G chr2:113736902 5'GT 113736902 Upstream 2bp
chr20 30385296 30385296 1 + G T UCEC 30385293 + 30385273 30385313 41 TCTCAGGAGCCCTTTGTTCCCAAGAAAGAGAAGAAATCAGT TCTCAGGAGCCCTTTGTTCCCAATAAAGAGAAGAAATCAGT < 41bp 0.796758940320343 0.435298936695932 0.37652326 0.21233961 prediction 0.593517880640686 Functional Loss - TPX2 ENSG00000088325 CDS Human protein_coding chr20:30385293 chr20:30385296 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_55082 0 0 1 0 2 TPX2 chr20:30385207 3'AG 30385207 Downstream 90bp
chr20 30385296 30385296 1 + G T UCEC 30385293 + 30385273 30385313 41 TCTCAGGAGCCCTTTGTTCCCAAGAAAGAGAAGAAATCAGT TCTCAGGAGCCCTTTGTTCCCAATAAAGAGAAGAAATCAGT < 41bp 0.796758940320343 0.435298936695932 0.37652326 0.21233961 prediction 0.593517880640686 Functional Loss - TPX2 ENSG00000088325 CDS Human protein_coding chr20:30385293 chr20:30385296 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_55082 0 0 1 0 2 TPX2 chr20:30385318 5'GT 30385318 Upstream 23bp
chr9 130911868 130911868 1 + G T LUSC 130911865 + 130911845 130911885 41 GGGCTCTGCATGCCCAGGCCCAGGACTCCACCTCAGACCTG GGGCTCTGCATGCCCAGGCCCAGTACTCCACCTCAGACCTG < 41bp 0.890867408079435 0.594123576938694 0.8594125 0.64765406 prediction 0.593487662281482 Functional Loss - LCN2 ENSG00000148346 CDS Human protein_coding chr9:130911865 chr9:130911868 nonsynonymous SNV 0.971 1 24 hm5C_associated_SNPs_55084 0 0 0 0 1 LCN2 chr9:130911942 5'GT 130911942 Upstream 75bp
chr18 641484 641484 1 + G T LUSC 641481 + 641461 641501 41 AAGATGAGAGGGCAATTTGGCTGGGTGTCTGAACTGGCAAA AAGATGAGAGGGCAATTTGGCTGTGTGTCTGAACTGGCAAA < 41bp 0.880388097563296 0.583649541028502 0.8142745 0.12902409 prediction 0.593477113069588 Functional Loss - CLUL1 ENSG00000079101 CDS Human protein_coding chr18:641481 chr18:641484 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_55086 0 0 0 0 1 CLUL1 chr18:641541 5'GT 641541 Upstream 58bp
chr8 144462836 144462836 1 + G T CESC 144462833 + 144462813 144462853 41 ACGCCCTGTGCCGCGTCCTGCGCGAGGTGGACCTGCTTCGG ACGCCCTGTGCCGCGTCCTGCGCTAGGTGGACCTGCTTCGG < 41bp 0.883792373643246 0.587064406504245 0.65282214 0.28445506 prediction 0.593455934278001 Functional Loss - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144462833 chr8:144462836 stopgain 0.013 0 24 hm5C_associated_SNPs_55087 0 0 1 0 1 RHPN1 chr8:144462759 3'AG 144462759 Downstream 78bp
chr2 79349989 79349989 1 + G T LUSC 79349987 + 79349967 79350007 41 AACCGCCGCTGGCACTGGAGCAGTGGGTCCCTGGTCTCCTA AACCGCCGCTGGCACTGGAGCATTGGGTCCCTGGTCTCCTA < 41bp 0.796727791116107 0.450253055144787 0.578623 0.20644188 prediction 0.593455582232214 Functional Loss - REG1A ENSG00000115386 CDS Human protein_coding chr2:79349987 chr2:79349989 nonsynonymous SNV 0.991 3 23 hm5C_associated_SNPs_55088 0 0 0 0 2 REG1A chr2:79349967 3'AG 79349967 Downstream 23bp
chr2 79349989 79349989 1 + G T LUSC 79349987 + 79349967 79350007 41 AACCGCCGCTGGCACTGGAGCAGTGGGTCCCTGGTCTCCTA AACCGCCGCTGGCACTGGAGCATTGGGTCCCTGGTCTCCTA < 41bp 0.796727791116107 0.450253055144787 0.578623 0.20644188 prediction 0.593455582232214 Functional Loss - REG1A ENSG00000115386 CDS Human protein_coding chr2:79349987 chr2:79349989 nonsynonymous SNV 0.991 3 23 hm5C_associated_SNPs_55088 0 0 0 0 2 REG1A chr2:79350078 5'GT 79350078 Upstream 90bp
chr16 30081487 30081487 1 + G T LUAD 30081484 + 30081464 30081504 41 GTACACTCCGAGCGGTCAGGCTGGGGCTGCTGCCAGCGAGT GTACACTCCGAGCGGTCAGGCTGTGGCTGCTGCCAGCGAGT < 41bp 0.796723265948752 0.411965844130464 0.9250828 0.37969238 prediction 0.593446531897504 Functional Loss - ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081484 chr16:30081487 nonsynonymous SNV 0.725 3 24 hm5C_associated_SNPs_55089 0 0 1 0 1 ALDOA chr16:30081438 3'AG 30081438 Downstream 50bp
chr16 30198031 30198031 1 + G T ACC 30198029 + 30198009 30198049 41 ATTGCCAGTGGCTCCGAGGACTGCACAGTCATGGTGAGTGG ATTGCCAGTGGCTCCGAGGACTTCACAGTCATGGTGAGTGG < 41bp 0.814765379347663 0.518046191854307 0.13109192 0.07015717 prediction 0.593438374986712 Functional Loss - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30198029 chr16:30198031 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_55091 0 0 0 0 1 CORO1A chr16:30198041 5'GT 30198041 Upstream 11bp
chr20 30137135 30137135 1 + G T LIHC 30137132 + 30137112 30137152 41 CTCTTCATCTACGATGTCTTCTGGGTGAGTCAGGCAGGGAT CTCTTCATCTACGATGTCTTCTGTGTGAGTCAGGCAGGGAT < 41bp 0.796716246642703 0.427431440426392 0.6508723 0.2360028 prediction 0.593432493285406 Functional Loss - HM13 ENSG00000101294 CDS Human protein_coding chr20:30137132 chr20:30137135 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_55094 0 0 1 0 1 HM13 chr20:30137135 5'GT 30137135 Upstream 1bp
chr3 47451444 47451444 1 + G T HNSC 47451441 + 47451421 47451461 41 GCTGAAGAAGAAGCCGCCGCCACGGCCCACAGCCCCAAAGC GCTGAAGAAGAAGCCGCCGCCACTGCCCACAGCCCCAAAGC < 41bp 0.796710168927436 0.409804409028163 0.6090237 0.31594968 prediction 0.593420337854873 Functional Loss - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47451441 chr3:47451444 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_55095 0 0 0 0 1 PTPN23 chr3:47451418 3'AG 47451418 Downstream 27bp
chr9 100325071 100325071 1 + G T SARC 100325069 + 100325049 100325089 41 CAGTACTACCAGGCCCTGAGCAGCAGCTCCATCATGAACAA CAGTACTACCAGGCCCTGAGCATCAGCTCCATCATGAACAA < 41bp 0.856503712324102 0.559803080450765 0.68777686 0.1872122 prediction 0.593401263746675 Functional Loss - TMOD1 ENSG00000136842 CDS Human protein_coding chr9:100325069 chr9:100325071 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_55098 0 0 0 0 2 TMOD1 chr9:100325014 3'AG 100325014 Downstream 58bp
chr9 100325071 100325071 1 + G T SARC 100325069 + 100325049 100325089 41 CAGTACTACCAGGCCCTGAGCAGCAGCTCCATCATGAACAA CAGTACTACCAGGCCCTGAGCATCAGCTCCATCATGAACAA < 41bp 0.856503712324102 0.559803080450765 0.68777686 0.1872122 prediction 0.593401263746675 Functional Loss - TMOD1 ENSG00000136842 CDS Human protein_coding chr9:100325069 chr9:100325071 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_55098 0 0 0 0 2 TMOD1 chr9:100325103 5'GT 100325103 Upstream 33bp
chr15 40993342 40993342 1 + A T KIRC 40993338 + 40993318 40993358 41 TGTGGAGGCTGTTGCCTATGCGCCAAAGAAGGAGCTAATAA TGTGGAGGCTGTTGCCTATGCGCCTAAGAAGGAGCTAATAA < 41bp 0.844968417967326 0.548271998248341 0.070497274 0.03680575 prediction 0.59339283943797 Functional Loss - RAD51 ENSG00000051180 CDS Human protein_coding chr15:40993338 chr15:40993342 synonymous SNV . 0 25 hm5C_associated_SNPs_55099 0 0 1 0 1 RAD51 chr15:40993399 5'GT 40993399 Upstream 58bp
chr15 89416218 89416218 1 + G T LUAD 89416216 + 89416196 89416236 41 GGCGAGTGGAATGATGTTCCCTGCAATTACCACCTCCCCTT GGCGAGTGGAATGATGTTCCCTTCAATTACCACCTCCCCTT < 41bp 0.819798337846388 0.523118583202684 0.16813597 0.120990664 prediction 0.593359509287409 Functional Loss - ACAN ENSG00000157766 CDS Human protein_coding chr15:89416216 chr15:89416218 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_55100 0 0 0 0 1 ACAN chr15:89416256 5'GT 89416256 Upstream 39bp
chr9 893983 893983 1 + G T LUAD 893980 + 893960 894000 41 ATGTGGAGAACACACCTGACCTGGTTTCAGACTCCACCTAC ATGTGGAGAACACACCTGACCTGTTTTCAGACTCCACCTAC < 41bp 0.796671939874071 0.411734142643285 0.44196206 0.117620945 prediction 0.593343879748143 Functional Loss - DMRT1 ENSG00000137090 CDS Human protein_coding chr9:893980 chr9:893983 nonsynonymous SNV 0.927 1 24 hm5C_associated_SNPs_55101 0 0 0 0 1 DMRT1 chr9:893912 3'AG 893912 Downstream 72bp
chr1 1386087 1386087 1 + G T KIRC 1386085 + 1386065 1386105 41 TGTCAAAGGACGCCCTGAATCTGGCGCAGATGCAGGAGCAG TGTCAAAGGACGCCCTGAATCTTGCGCAGATGCAGGAGCAG < 41bp 0.844658964185298 0.547997340902833 0.83739007 0.20789978 prediction 0.593323246564931 Functional Loss - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1386085 chr1:1386087 synonymous SNV . 0 23 hm5C_associated_SNPs_55102 0 0 0 0 1 ATAD3C chr1:1386138 5'GT 1386138 Upstream 52bp
chr3 89480306 89480306 1 + G T LUSC 89480303 + 89480283 89480323 41 TTTGAAATGCTTCCCAGAAACACGATGCCCAGTTTACTGTC TTTGAAATGCTTCCCAGAAACACTATGCCCAGTTTACTGTC < 41bp 0.79665919846264 0.459756596746405 0.09169629 0.10955447 prediction 0.593318396925279 Functional Loss - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89480303 chr3:89480306 nonsynonymous SNV 0.987 4 24 hm5C_associated_SNPs_55104 0 0 0 0 1 EPHA3 chr3:89480300 3'AG 89480300 Downstream 7bp
chr4 20618731 20618731 1 + G T COAD 20618729 + 20618709 20618749 41 GCCCATGGCACATGCCAGCCCAGCAGCCAGGCAGGCTTCAC GCCCATGGCACATGCCAGCCCATCAGCCAGGCAGGCTTCAC < 41bp 0.811929897845639 0.51527721944705 0.16969809 0.118448436 prediction 0.593305356797178 Functional Loss - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20618729 chr4:20618731 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_55106 0 0 0 0 1 SLIT2 chr4:20618821 5'GT 20618821 Upstream 91bp
chr17 35830537 35830537 1 + G T THCA 35830534 + 35830514 35830554 41 CTACGATCACCTCAAGAAGACACGGGAGGAAGAGCGCCTTA CTACGATCACCTCAAGAAGACACTGGAGGAAGAGCGCCTTA < 41bp 0.79664046608375 0.417613961788314 0.2480582 0.2293191 prediction 0.593280932167499 Functional Loss - TADA2A ENSG00000108264 CDS Human other chr17:35830534 chr17:35830537 nonsynonymous SNV 0.962 3 24 hm5C_associated_SNPs_55107 0 0 0 0 2 TADA2A chr17:35830504 3'AG 35830504 Downstream 34bp
chr17 35830537 35830537 1 + G T THCA 35830534 + 35830514 35830554 41 CTACGATCACCTCAAGAAGACACGGGAGGAAGAGCGCCTTA CTACGATCACCTCAAGAAGACACTGGAGGAAGAGCGCCTTA < 41bp 0.79664046608375 0.417613961788314 0.2480582 0.2293191 prediction 0.593280932167499 Functional Loss - TADA2A ENSG00000108264 CDS Human other chr17:35830534 chr17:35830537 nonsynonymous SNV 0.962 3 24 hm5C_associated_SNPs_55107 0 0 0 0 2 TADA2A chr17:35830636 5'GT 35830636 Upstream 100bp
chr12 56118161 56118161 1 + G T STAD 56118158 + 56118138 56118178 41 ATCTGTGACCCGGACCTAACCAAGGTGAGCCGATGCCTGGA ATCTGTGACCCGGACCTAACCAATGTGAGCCGATGCCTGGA < 41bp 0.884800613561074 0.588161628813968 0.909595 0.34288025 prediction 0.593277969494211 Functional Loss - RDH5 ENSG00000135437 CDS Human protein_coding chr12:56118158 chr12:56118161 nonsynonymous SNV 0.992 2 24 hm5C_associated_SNPs_55108 0 0 1 0 1 RDH5 chr12:56118106 3'AG 56118106 Downstream 56bp
chr20 44004176 44004176 1 - T A LUAD 44004180 - 44004160 44004200 41 CCTGCCAGGGAAAACAGTGCCTGCAATAAAACAAAACAAAA CCTGCCAGGGAAAACAGTGCCTGCTATAAAACAAAACAAAA < 41bp 0.805133473463563 0.508498748791566 0.27430028 0.031514168 prediction 0.593269449343994 Functional Loss - TP53TG5 ENSG00000124251 CDS Human protein_coding chr20:44004180 chr20:44004176 nonsynonymous SNV 0.028 0 25 hm5C_associated_SNPs_55109 0 0 0 0 1 TP53TG5 chr20:44004192 3'AG 44004192 Downstream 17bp
chr19 50304824 50304824 1 + G T LUSC 50304822 + 50304802 50304842 41 GCAATGCTGACGTGGAGCTGCAGCAGCGAGCCGTGGAGTAC GCAATGCTGACGTGGAGCTGCATCAGCGAGCCGTGGAGTAC < 41bp 0.833055486186202 0.536435086697961 0.4018118 0.30865985 prediction 0.59324079897648 Functional Loss - AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50304822 chr19:50304824 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_55111 0 0 1 0 1 AP2A1 chr19:50304878 5'GT 50304878 Upstream 55bp
chr2 71209740 71209740 1 + G T UCEC 71209737 + 71209717 71209757 41 GATGCCATGTGGAAAAAGGACAAGAAGGACTTTGCCCGTGA GATGCCATGTGGAAAAAGGACAATAAGGACTTTGCCCGTGA < 41bp 0.796616189726928 0.420911477342805 0.115787774 0.04693833 prediction 0.593232379453855 Functional Loss - ANKRD53 ENSG00000144031 CDS Human protein_coding chr2:71209737 chr2:71209740 nonsynonymous SNV 0.946 4 24 hm5C_associated_SNPs_55112 0 0 0 0 2 ANKRD53 chr2:71209707 3'AG 71209707 Downstream 34bp
chr2 71209740 71209740 1 + G T UCEC 71209737 + 71209717 71209757 41 GATGCCATGTGGAAAAAGGACAAGAAGGACTTTGCCCGTGA GATGCCATGTGGAAAAAGGACAATAAGGACTTTGCCCGTGA < 41bp 0.796616189726928 0.420911477342805 0.115787774 0.04693833 prediction 0.593232379453855 Functional Loss - ANKRD53 ENSG00000144031 CDS Human protein_coding chr2:71209737 chr2:71209740 nonsynonymous SNV 0.946 4 24 hm5C_associated_SNPs_55112 0 0 0 0 2 ANKRD53 chr2:71209827 5'GT 71209827 Upstream 88bp
chr20 31673843 31673843 1 + G T LUSC 31673840 + 31673820 31673860 41 CCTCCAGTCTTATTGGCTTCCTGGACATCGCAGTAGAAGTG CCTCCAGTCTTATTGGCTTCCTGTACATCGCAGTAGAAGTG < 41bp 0.796607087432731 0.432892964923781 0.13052046 0.053037286 prediction 0.593214174865461 Functional Loss - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31673840 chr20:31673843 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_55114 0 0 0 0 1 BPIFB4 chr20:31673827 3'AG 31673827 Downstream 17bp
chr1 155020636 155020636 1 + A T ESCA 155020632 + 155020612 155020652 41 CTATCCTGAGGCGGGAGCGACAGCAGAAGGCTCCGGTAAGT CTATCCTGAGGCGGGAGCGACAGCTGAAGGCTCCGGTAAGT < 41bp 0.804560180617293 0.507982060687234 0.9083202 0.8976024 prediction 0.593156239860119 Functional Loss - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155020632 chr1:155020636 nonsynonymous SNV 0.807 0 25 hm5C_associated_SNPs_55118 0 0 0 0 1 DCST1 chr1:155020646 5'GT 155020646 Upstream 11bp
chr10 135370273 135370273 1 - C A GBM 135370275 - 135370255 135370295 41 ATGGGCCAGCACAAGGACCTCTGGGACTTCCACGTGAGTCC ATGGGCCAGCACAAGGACCTCTTGGACTTCCACGTGAGTCC < 41bp 0.853290327221618 0.55673722611118 0.41742188 0.0816741 prediction 0.593106202220876 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135370275 chr10:135370273 nonsynonymous SNV 0.975 0 23 hm5C_associated_SNPs_55119 0 0 0 0 2 SYCE1 chr10:135370263 5'GT 135370263 Upstream 11bp
chr10 135370273 135370273 1 - C A GBM 135370275 - 135370255 135370295 41 ATGGGCCAGCACAAGGACCTCTGGGACTTCCACGTGAGTCC ATGGGCCAGCACAAGGACCTCTTGGACTTCCACGTGAGTCC < 41bp 0.853290327221618 0.55673722611118 0.41742188 0.0816741 prediction 0.593106202220876 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135370275 chr10:135370273 nonsynonymous SNV 0.975 0 23 hm5C_associated_SNPs_55119 0 0 0 0 2 SYCE1 chr10:135370326 3'AG 135370326 Downstream 54bp
chr3 119501618 119501618 1 + G T UCEC 119501616 + 119501596 119501636 41 GACAGCAGCATGACAGTCACCAGGACTCACCACTTCAAGGA GACAGCAGCATGACAGTCACCATGACTCACCACTTCAAGGA < 41bp 0.796552590743584 0.472354123020233 0.6936935 0.066750556 prediction 0.593105181487168 Functional Loss - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119501616 chr3:119501618 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_55120 0 0 0 0 1 NR1I2 chr3:119501699 5'GT 119501699 Upstream 82bp
chr17 80680735 80680735 1 + G T TGCT 80680732 + 80680712 80680752 41 GTGGCCCGGTTTGGATTTGACGTGGTGACGTGCTGTGGATA GTGGCCCGGTTTGGATTTGACGTTGTGACGTGCTGTGGATA < 41bp 0.796546956173002 0.404341767824769 0.89200103 0.2946449 prediction 0.593093912346003 Functional Loss - FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80680732 chr17:80680735 synonymous SNV . 0 24 hm5C_associated_SNPs_55121 0 0 1 0 2 FN3KRP chr17:80680680 3'AG 80680680 Downstream 56bp
chr17 80680735 80680735 1 + G T TGCT 80680732 + 80680712 80680752 41 GTGGCCCGGTTTGGATTTGACGTGGTGACGTGCTGTGGATA GTGGCCCGGTTTGGATTTGACGTTGTGACGTGCTGTGGATA < 41bp 0.796546956173002 0.404341767824769 0.89200103 0.2946449 prediction 0.593093912346003 Functional Loss - FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80680732 chr17:80680735 synonymous SNV . 0 24 hm5C_associated_SNPs_55121 0 0 1 0 2 FN3KRP chr17:80680762 5'GT 80680762 Upstream 28bp
chr16 83991313 83991313 1 + A C rs148139055 83991309 + 83991289 83991329 41 AGAAAGGACCACCTCGGCGCCAGCAGCTCAGAGCCCCTCCC AGAAAGGACCACCTCGGCGCCAGCCGCTCAGAGCCCCTCCC < 41bp 0.796539427720347 0.393134734025918 0.06714949 0.036804467 prediction 0.593078855440695 Functional Loss - OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83991309 chr16:83991313 nonsynonymous SNV 0.167 1 25 hm5C_associated_SNPs_55122 0 0 0 0 2 OSGIN1 chr16:83991245 3'AG 83991245 Downstream 69bp
chr16 83991313 83991313 1 + A C rs148139055 83991309 + 83991289 83991329 41 AGAAAGGACCACCTCGGCGCCAGCAGCTCAGAGCCCCTCCC AGAAAGGACCACCTCGGCGCCAGCCGCTCAGAGCCCCTCCC < 41bp 0.796539427720347 0.393134734025918 0.06714949 0.036804467 prediction 0.593078855440695 Functional Loss - OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83991309 chr16:83991313 nonsynonymous SNV 0.167 1 25 hm5C_associated_SNPs_55122 0 0 0 0 2 OSGIN1 chr16:83991343 5'GT 83991343 Upstream 31bp
chr7 65552335 65552335 1 + G T ESCA 65552332 + 65552312 65552352 41 TCCCTGCAGTGGGGCCATTGCAGGCAATCCCCTGGGTGTGG TCCCTGCAGTGGGGCCATTGCAGTCAATCCCCTGGGTGTGG < 41bp 0.796524798417457 0.402280599416399 0.88487035 0.45665887 prediction 0.593049596834913 Functional Loss - ASL ENSG00000126522 CDS Human protein_coding chr7:65552332 chr7:65552335 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_55123 0 0 1 0 2 ASL chr7:65552321 3'AG 65552321 Downstream 15bp
chr7 65552335 65552335 1 + G T ESCA 65552332 + 65552312 65552352 41 TCCCTGCAGTGGGGCCATTGCAGGCAATCCCCTGGGTGTGG TCCCTGCAGTGGGGCCATTGCAGTCAATCCCCTGGGTGTGG < 41bp 0.796524798417457 0.402280599416399 0.88487035 0.45665887 prediction 0.593049596834913 Functional Loss - ASL ENSG00000126522 CDS Human protein_coding chr7:65552332 chr7:65552335 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_55123 0 0 1 0 2 ASL chr7:65552373 5'GT 65552373 Upstream 39bp
chr10 37419270 37419270 1 + G T HNSC 37419268 + 37419248 37419288 41 TTTTGTCAGTGGTGGCAAAACTGCTGTCCCATGGTGCAGTC TTTTGTCAGTGGTGGCAAAACTTCTGTCCCATGGTGCAGTC < 41bp 0.796515713759786 0.485654718512496 0.27798045 0.3044433 prediction 0.593031427519572 Functional Loss - ANKRD30A ENSG00000148513 CDS Human protein_coding chr10:37419268 chr10:37419270 synonymous SNV . 0 23 hm5C_associated_SNPs_55125 0 0 0 0 1 ANKRD30A chr10:37419306 5'GT 37419306 Upstream 37bp
chr1 205566951 205566951 1 + G T UCEC 205566948 + 205566928 205566968 41 GTGACAGGGGCAGGAGTTGGCGAGATGGTGCTGCAGATGCT GTGACAGGGGCAGGAGTTGGCGATATGGTGCTGCAGATGCT < 41bp 0.880971896469453 0.584456362637767 0.8828784 0.74757755 prediction 0.593031067663372 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205566948 chr1:205566951 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_55126 0 0 0 5 2 MFSD4A chr1:205566908 3'AG 205566908 Downstream 44bp
chr1 205566951 205566951 1 + G T UCEC 205566948 + 205566928 205566968 41 GTGACAGGGGCAGGAGTTGGCGAGATGGTGCTGCAGATGCT GTGACAGGGGCAGGAGTTGGCGATATGGTGCTGCAGATGCT < 41bp 0.880971896469453 0.584456362637767 0.8828784 0.74757755 prediction 0.593031067663372 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205566948 chr1:205566951 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_55126 0 0 0 5 2 MFSD4A chr1:205566978 5'GT 205566978 Upstream 28bp
chr1 1120488 1120488 1 + A C rs74475385 1120484 + 1120464 1120504 41 AGGACTGGGTCTTCACCACCCTCAAGGTGCGTCCACTGTGC AGGACTGGGTCTTCACCACCCTCACGGTGCGTCCACTGTGC < 41bp 0.796499474745996 0.38390680304343 0.11223197 0.12995434 prediction 0.592998949491991 Functional Loss - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1120484 chr1:1120488 nonsynonymous SNV 0.932 0 25 hm5C_associated_SNPs_55128 0 0 0 0 1 TTLL10 chr1:1120489 5'GT 1120489 Upstream 2bp
chr16 73127440 73127440 1 + A C rs75228366 73127436 + 73127416 73127456 41 TGTCCACTCTCGGGCTGTCACACAAGCCTGGAGCCCAGCCA TGTCCACTCTCGGGCTGTCACACACGCCTGGAGCCCAGCCA < 41bp 0.874529258447794 0.578029958542301 0.50691783 0.3442154 prediction 0.592998599810985 Functional Loss - HCCAT5 ENSG00000260880 ncRNA_exonic Human lincRNA chr16:73127436 chr16:73127440 . . 0 25 hm5C_associated_SNPs_55129 0 0 0 0 1 HCCAT5 chr16:73127363 3'AG 73127363 Downstream 78bp
chr19 36250297 36250297 1 + G T GBM 36250294 + 36250274 36250314 41 GCCTGCCAGTTTTCTCCATTCAAGATAGTCCCTTTGGAGAT GCCTGCCAGTTTTCTCCATTCAATATAGTCCCTTTGGAGAT < 41bp 0.887852076182829 0.591366450333614 0.3070686 0.0127770305 prediction 0.592971251698429 Functional Loss - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36250294 chr19:36250297 nonsynonymous SNV 0.257 2 24 hm5C_associated_SNPs_55132 0 0 1 0 2 PROSER3 chr19:36250275 3'AG 36250275 Downstream 23bp
chr19 36250297 36250297 1 + G T GBM 36250294 + 36250274 36250314 41 GCCTGCCAGTTTTCTCCATTCAAGATAGTCCCTTTGGAGAT GCCTGCCAGTTTTCTCCATTCAATATAGTCCCTTTGGAGAT < 41bp 0.887852076182829 0.591366450333614 0.3070686 0.0127770305 prediction 0.592971251698429 Functional Loss - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36250294 chr19:36250297 nonsynonymous SNV 0.257 2 24 hm5C_associated_SNPs_55132 0 0 1 0 2 PROSER3 chr19:36250371 5'GT 36250371 Upstream 75bp
chr2 75107439 75107439 1 + G T HNSC 75107437 + 75107417 75107457 41 GTGCGGCGGCTGGTGCCCGGCTGCGATGTCCGCTTCCTCCG GTGCGGCGGCTGGTGCCCGGCTTCGATGTCCGCTTCCTCCG < 41bp 0.796452742393392 0.459092164459102 0.104160905 0.116747975 prediction 0.592905484786785 Functional Loss - HK2 ENSG00000159399 CDS Human protein_coding chr2:75107437 chr2:75107439 nonsynonymous SNV 0.286 5 23 hm5C_associated_SNPs_55137 0 0 1 0 1 HK2 chr2:75107392 3'AG 75107392 Downstream 48bp
chr19 3586634 3586634 1 + G T COAD 3586631 + 3586611 3586651 41 TCACTAAGACAGAGGATGCTCTGGGGCTGACCATCACGGAC TCACTAAGACAGAGGATGCTCTGTGGCTGACCATCACGGAC < 41bp 0.894399546939783 0.597960129401863 0.40805718 0.21331328 prediction 0.592878835075839 Functional Loss - GIPC3 ENSG00000179855 CDS Human protein_coding chr19:3586631 chr19:3586634 nonsynonymous SNV 0.875 5 24 hm5C_associated_SNPs_55138 0 0 0 0 1 GIPC3 chr19:3586678 5'GT 3586678 Upstream 45bp
chr15 102292749 102292749 1 + A C GBM 102292745 + 102292725 102292765 41 GGAGACACTCCTGGAGGAGTCGGCAGAGCAGGCACAGCGGC GGAGACACTCCTGGAGGAGTCGGCCGAGCAGGCACAGCGGC < 41bp 0.855614786330191 0.559177489450325 0.9076928 0.85624593 prediction 0.592874593759732 Functional Loss - LOC100128108;OR4F6 ENSG00000259660 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102292745 chr15:102292749 . . 0 25 hm5C_associated_SNPs_55139 0 0 0 0 1 LOC100128108;OR4F6 chr15:102292669 3'AG 102292669 Downstream 81bp
chr21 14414921 14414921 1 + G T UCEC 14414919 + 14414899 14414939 41 GACGTCCTTGATGGCGAAAACAGGACAACTCTGATGAAGGT GACGTCCTTGATGGCGAAAACATGACAACTCTGATGAAGGT < 41bp 0.80312657443035 0.506690492942851 0.28318757 0.06039977 prediction 0.592872162974998 Functional Loss - ANKRD30BP2 ENSG00000224309 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr21:14414919 chr21:14414921 . . 0 23 hm5C_associated_SNPs_55140 0 0 0 0 2 ANKRD30BP2 chr21:14414823 3'AG 14414823 Downstream 99bp
chr21 14414921 14414921 1 + G T UCEC 14414919 + 14414899 14414939 41 GACGTCCTTGATGGCGAAAACAGGACAACTCTGATGAAGGT GACGTCCTTGATGGCGAAAACATGACAACTCTGATGAAGGT < 41bp 0.80312657443035 0.506690492942851 0.28318757 0.06039977 prediction 0.592872162974998 Functional Loss - ANKRD30BP2 ENSG00000224309 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr21:14414919 chr21:14414921 . . 0 23 hm5C_associated_SNPs_55140 0 0 0 0 2 ANKRD30BP2 chr21:14414937 5'GT 14414937 Upstream 17bp
chr8 73939210 73939210 1 + A T CESC 73939206 + 73939186 73939226 41 AGTAGTAGAAAGCAAAAGGACAAGAACAATAACTTCTCAAG AGTAGTAGAAAGCAAAAGGACAAGTACAATAACTTCTCAAG < 41bp 0.796426596190964 0.499665179477358 0.20020571 0.28844765 prediction 0.592853192381927 Functional Loss - TERF1 ENSG00000147601 CDS Human protein_coding chr8:73939206 chr8:73939210 nonsynonymous SNV 0.084 2 25 hm5C_associated_SNPs_55142 0 0 1 0 2 TERF1 chr8:73939175 3'AG 73939175 Downstream 36bp
chr8 73939210 73939210 1 + A T CESC 73939206 + 73939186 73939226 41 AGTAGTAGAAAGCAAAAGGACAAGAACAATAACTTCTCAAG AGTAGTAGAAAGCAAAAGGACAAGTACAATAACTTCTCAAG < 41bp 0.796426596190964 0.499665179477358 0.20020571 0.28844765 prediction 0.592853192381927 Functional Loss - TERF1 ENSG00000147601 CDS Human protein_coding chr8:73939206 chr8:73939210 nonsynonymous SNV 0.084 2 25 hm5C_associated_SNPs_55142 0 0 1 0 2 TERF1 chr8:73939287 5'GT 73939287 Upstream 78bp
chr11 118451973 118451973 1 + G T rs138863361 118451971 + 118451951 118451991 41 TTCCTGGCAGGTGCTGTTGGCAGCAGCGGTCTGCACAAAAG TTCCTGGCAGGTGCTGTTGGCATCAGCGGTCTGCACAAAAG < 41bp 0.796412687308541 0.481237233318765 0.8101628 0.27111736 prediction 0.592825374617081 Functional Loss - ARCN1 ENSG00000095139 CDS Human protein_coding chr11:118451971 chr11:118451973 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_55146 0 0 1 0 1 ARCN1 chr11:118451961 3'AG 118451961 Downstream 13bp
chr10 70958268 70958268 1 + G T LUSC 70958266 + 70958246 70958286 41 TGAGTCGGCAGATTGAAATTCGGGGATTAGAATCAGCTGTT TGAGTCGGCAGATTGAAATTCGTGGATTAGAATCAGCTGTT < 41bp 0.822277418799655 0.525869413238919 0.90554947 0.7055788 prediction 0.592816011121473 Functional Loss - SUPV3L1 ENSG00000156502 CDS Human protein_coding chr10:70958266 chr10:70958268 synonymous SNV . 0 23 hm5C_associated_SNPs_55148 0 0 1 0 1 SUPV3L1 chr10:70958308 5'GT 70958308 Upstream 41bp
chr1 236907947 236907947 1 + A T LUAD 236907943 + 236907923 236907963 41 CAGGCAAAGAGCAGATCTTGCTGCAGAAGGATTACGAGTCG CAGGCAAAGAGCAGATCTTGCTGCTGAAGGATTACGAGTCG < 41bp 0.821723785557511 0.525322757806263 0.3435554 0.11653361 prediction 0.592802055502496 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236907943 chr1:236907947 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_55149 0 0 1 0 1 ACTN2 chr1:236907926 3'AG 236907926 Downstream 22bp
chrY 6911055 6911055 1 + G T READ 6911052 + 6911032 6911072 41 TCGGCTTTCACGTTTGGGATCGAGAGCCACATCAGCCAGTC TCGGCTTTCACGTTTGGGATCGATAGCCACATCAGCCAGTC < 41bp 0.847132193346833 0.55073366861728 0.8920764 0.012889475 prediction 0.592797049459107 Functional Loss - TBL1Y ENSG00000092377 CDS Human protein_coding chrY:6911052 chrY:6911055 nonsynonymous SNV 0.744 4 24 hm5C_associated_SNPs_55150 0 0 0 0 1 TBL1Y chrY:6911021 3'AG 6911021 Downstream 35bp
chr20 30412134 30412134 1 + G T UCEC 30412131 + 30412111 30412151 41 AAGCTGGCAGCCAAGGTCATCAAGAAACAGACTCCCAAAGA AAGCTGGCAGCCAAGGTCATCAATAAACAGACTCCCAAAGA < 41bp 0.796393089397755 0.414885492512046 0.35033232 0.14517525 prediction 0.592786178795511 Functional Loss - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30412131 chr20:30412134 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_55151 0 0 0 0 2 MYLK2 chr20:30412062 3'AG 30412062 Downstream 73bp
chr20 30412134 30412134 1 + G T UCEC 30412131 + 30412111 30412151 41 AAGCTGGCAGCCAAGGTCATCAAGAAACAGACTCCCAAAGA AAGCTGGCAGCCAAGGTCATCAATAAACAGACTCCCAAAGA < 41bp 0.796393089397755 0.414885492512046 0.35033232 0.14517525 prediction 0.592786178795511 Functional Loss - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30412131 chr20:30412134 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_55151 0 0 0 0 2 MYLK2 chr20:30412155 5'GT 30412155 Upstream 22bp
chr2 133175439 133175439 1 + G T LUSC 133175437 + 133175417 133175457 41 AAGTCCGAGAGCGAAGAGAGCAGGACCGCCAGGAGGCAGAC AAGTCCGAGAGCGAAGAGAGCATGACCGCCAGGAGGCAGAC < 41bp 0.853058827691582 0.556666499079395 0.38631332 0.131818 prediction 0.592784657224374 Functional Loss - GPR39 ENSG00000183840 CDS Human protein_coding chr2:133175437 chr2:133175439 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_55152 0 0 0 0 1 GPR39 chr2:133175471 5'GT 133175471 Upstream 33bp
chr1 171759642 171759642 1 + G T LUAD 171759640 + 171759620 171759660 41 GAAGCAGCGGCCTGCTGATGCGGAGGACCTCCCTGCAGCCC GAAGCAGCGGCCTGCTGATGCGTAGGACCTCCCTGCAGCCC < 41bp 0.854805222062644 0.558419517035534 0.92189604 0.1988835 prediction 0.592771410054219 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171759640 chr1:171759642 stopgain 0.167 0 23 hm5C_associated_SNPs_55154 0 0 1 0 1 METTL13 chr1:171759592 3'AG 171759592 Downstream 51bp
chr10 18948604 18948604 1 + G T LUAD 18948602 + 18948582 18948622 41 GCCAAACTGTGGAGCCTCTTCTGTAACCAAGGTGAGAAGAA GCCAAACTGTGGAGCCTCTTCTTTAACCAAGGTGAGAAGAA < 41bp 0.802262448378272 0.505883943358515 0.16265014 0.101680696 prediction 0.592757010039513 Functional Loss - ARL5B ENSG00000165997 CDS Human protein_coding chr10:18948602 chr10:18948604 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_55156 0 0 1 0 1 ARL5B chr10:18948612 5'GT 18948612 Upstream 9bp
chr19 54406402 54406402 1 + G T UCEC 54406400 + 54406380 54406420 41 TCTGCTGTATGAGATGTTGGCAGGACAGGTAAGGGAAGGTG TCTGCTGTATGAGATGTTGGCATGACAGGTAAGGGAAGGTG < 41bp 0.838832329509594 0.542458581162456 0.7459153 0.25472307 prediction 0.592747496694277 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54406400 chr19:54406402 stopgain 1.000 0 23 hm5C_associated_SNPs_55157 0 0 0 0 2 PRKCG chr19:54406327 3'AG 54406327 Downstream 76bp
chr19 54406402 54406402 1 + G T UCEC 54406400 + 54406380 54406420 41 TCTGCTGTATGAGATGTTGGCAGGACAGGTAAGGGAAGGTG TCTGCTGTATGAGATGTTGGCATGACAGGTAAGGGAAGGTG < 41bp 0.838832329509594 0.542458581162456 0.7459153 0.25472307 prediction 0.592747496694277 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54406400 chr19:54406402 stopgain 1.000 0 23 hm5C_associated_SNPs_55157 0 0 0 0 2 PRKCG chr19:54406407 5'GT 54406407 Upstream 6bp
chr1 156038071 156038071 1 + G T LUSC 156038068 + 156038048 156038088 41 CATTCCCACCCAGGTACTATCGTGGTGCAGTGGGGGCCCTC CATTCCCACCCAGGTACTATCGTTGTGCAGTGGGGGCCCTC < 41bp 0.79637216795003 0.406135955226672 0.9156314 0.19636658 prediction 0.59274433590006 Functional Loss - RAB25 ENSG00000132698 CDS Human protein_coding chr1:156038068 chr1:156038071 nonsynonymous SNV 0.972 5 24 hm5C_associated_SNPs_55158 0 0 0 0 1 RAB25 chr1:156038061 3'AG 156038061 Downstream 11bp
chrX 47106510 47106510 1 + G T OV 47106507 + 47106487 47106527 41 AAGCAGCACCAGCTGGCAACCAAGAAGCTGGACCTGTGGAT AAGCAGCACCAGCTGGCAACCAATAAGCTGGACCTGTGGAT < 41bp 0.796366121554171 0.414753024678945 0.37163037 0.23191687 prediction 0.592732243108341 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47106507 chrX:47106510 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_55160 0 0 1 0 1 USP11 chrX:47106471 3'AG 47106471 Downstream 40bp
chr3 10276286 10276286 1 + G T UCEC 10276283 + 10276263 10276303 41 AGGCTTCCGGAGGACTGCGCCGAGGCCCTGGCCACGGCTGC AGGCTTCCGGAGGACTGCGCCGATGCCCTGGCCACGGCTGC < 41bp 0.796359031326917 0.404599355722066 0.86878276 0.5561853 prediction 0.592718062653834 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10276283 chr3:10276286 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_55161 0 0 0 0 1 IRAK2 chr3:10276343 5'GT 10276343 Upstream 58bp
chr19 17611618 17611618 1 + G T KIRC 17611615 + 17611595 17611635 41 GGGGAGAACGTCTCCACCACCGAGGTGGAGGGCGTGCTGAG GGGGAGAACGTCTCCACCACCGATGTGGAGGGCGTGCTGAG < 41bp 0.892891596989267 0.596562763543059 0.9342103 0.22737485 prediction 0.592657666892416 Functional Loss - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17611615 chr19:17611618 nonsynonymous SNV 0.963 4 24 hm5C_associated_SNPs_55162 0 0 0 0 1 SLC27A1 chr19:17611521 3'AG 17611521 Downstream 98bp
chr19 52817472 52817472 1 + G T TGCT 52817470 + 52817450 52817490 41 GGAGTGGAAATGCCTGGACCCTGCACAGAGGGCTTTATACA GGAGTGGAAATGCCTGGACCCTTCACAGAGGGCTTTATACA < 41bp 0.808768730966321 0.512440218250127 0.02590105 0.008495092 prediction 0.592657025432389 Functional Loss - ZNF480 ENSG00000198464 CDS Human protein_coding chr19:52817470 chr19:52817472 nonsynonymous SNV 0.055 0 23 hm5C_associated_SNPs_55163 0 0 1 0 2 ZNF480 chr19:52817406 3'AG 52817406 Downstream 67bp
chr19 52817472 52817472 1 + G T TGCT 52817470 + 52817450 52817490 41 GGAGTGGAAATGCCTGGACCCTGCACAGAGGGCTTTATACA GGAGTGGAAATGCCTGGACCCTTCACAGAGGGCTTTATACA < 41bp 0.808768730966321 0.512440218250127 0.02590105 0.008495092 prediction 0.592657025432389 Functional Loss - ZNF480 ENSG00000198464 CDS Human protein_coding chr19:52817470 chr19:52817472 nonsynonymous SNV 0.055 0 23 hm5C_associated_SNPs_55163 0 0 1 0 2 ZNF480 chr19:52817532 5'GT 52817532 Upstream 61bp
chr15 83657831 83657831 1 + G T UCEC 83657829 + 83657809 83657849 41 GATGTTTGCTAGTAGATTCACAGAAAATGACAAGGAGTATC GATGTTTGCTAGTAGATTCACATAAAATGACAAGGAGTATC < 41bp 0.796318222241943 0.489199006325569 0.06531167 0.06641558 prediction 0.592636444483886 Functional Loss - C15orf40;FAM103A1 ENSG00000169609;ENSG00000169612 CDS Human antisense chr15:83657829 chr15:83657831 stopgain 0.990 2 23 hm5C_associated_SNPs_55165 0 0 0 0 1 FAM103A1;C15orf40 chr15:83657762 3'AG 83657762 Downstream 70bp
chr3 197687287 197687287 1 + G T LUAD 197687285 + 197687265 197687305 41 TGGGCAGTTCCCCTCCCTGCCGGCACCACGTCCCCTCTGAC TGGGCAGTTCCCCTCCCTGCCGTCACCACGTCCCCTCTGAC < 41bp 0.796317604393031 0.463531829762799 0.28521028 0.072897345 prediction 0.592635208786061 Functional Loss - LMLN ENSG00000185621 CDS Human protein_coding chr3:197687285 chr3:197687287 synonymous SNV . 0 23 hm5C_associated_SNPs_55166 0 0 0 0 1 LMLN chr3:197687311 5'GT 197687311 Upstream 25bp
chr9 115167992 115167992 1 + G T UCEC 115167989 + 115167969 115168009 41 GCTGCAGTGGAGAAAGCCATCAAGAAATTTGGAGGTAATAC GCTGCAGTGGAGAAAGCCATCAATAAATTTGGAGGTAATAC < 41bp 0.796309677409813 0.439699067920898 0.8896698 0.74998176 prediction 0.592619354819625 Functional Loss - HSDL2 ENSG00000119471 CDS Human protein_coding chr9:115167989 chr9:115167992 nonsynonymous SNV 0.673 1 24 hm5C_associated_SNPs_55168 0 0 1 0 2 HSDL2 chr9:115167904 3'AG 115167904 Downstream 89bp
chr9 115167992 115167992 1 + G T UCEC 115167989 + 115167969 115168009 41 GCTGCAGTGGAGAAAGCCATCAAGAAATTTGGAGGTAATAC GCTGCAGTGGAGAAAGCCATCAATAAATTTGGAGGTAATAC < 41bp 0.796309677409813 0.439699067920898 0.8896698 0.74998176 prediction 0.592619354819625 Functional Loss - HSDL2 ENSG00000119471 CDS Human protein_coding chr9:115167989 chr9:115167992 nonsynonymous SNV 0.673 1 24 hm5C_associated_SNPs_55168 0 0 1 0 2 HSDL2 chr9:115168002 5'GT 115168002 Upstream 11bp
chr4 89311945 89311945 1 + G T UCEC 89311943 + 89311923 89311963 41 GTGGCTGCCGGAGGGGCTCACAGCTTTGCCCTGTCTCTCTG GTGGCTGCCGGAGGGGCTCACATCTTTGCCCTGTCTCTCTG < 41bp 0.857690255133457 0.561383084896436 0.39257827 0.1456525 prediction 0.592614340474043 Functional Loss - HERC6 ENSG00000138642 CDS Human protein_coding chr4:89311943 chr4:89311945 nonsynonymous SNV 0.982 5 23 hm5C_associated_SNPs_55170 0 0 0 0 1 HERC6 chr4:89312031 5'GT 89312031 Upstream 87bp
chr14 22951283 22951283 1 + G T LUAD 22951281 + 22951261 22951301 41 CCTCGTGCTGTGGTGTAATTCAGGGAGCCCAGAAGCTGGTA CCTCGTGCTGTGGTGTAATTCATGGAGCCCAGAAGCTGGTA < 41bp 0.796301659447051 0.474716425217362 0.912709 0.34595206 prediction 0.592603318894103 Functional Loss - OR4E1;LINC02332 ENSG00000211836 CDS Human TR_J_gene chr14:22951281 chr14:22951283 unknown . 0 23 hm5C_associated_SNPs_55171 0 0 0 0 1 OR4E1;LINC02332 chr14:22951335 5'GT 22951335 Upstream 53bp
chr1 7886577 7886577 1 + G T SARC 7886575 + 7886555 7886595 41 TCTTCTGTGAGCCCTGGACCCTGAACATGCAGCCAGCCCCT TCTTCTGTGAGCCCTGGACCCTTAACATGCAGCCAGCCCCT < 41bp 0.796301485457643 0.465395249247251 0.07233176 0.118988454 prediction 0.592602970915287 Functional Loss - PER3 ENSG00000049246 CDS Human protein_coding chr1:7886575 chr1:7886577 synonymous SNV . 0 23 hm5C_associated_SNPs_55172 0 0 0 0 1 PER3 chr1:7886540 3'AG 7886540 Downstream 38bp
chr11 61511088 61511088 1 + G T STAD 61511086 + 61511066 61511106 41 TGGTTGCGGCGGCGGCCCGCCAGGACCCGGTGGAGCTGCTG TGGTTGCGGCGGCGGCCCGCCATGACCCGGTGGAGCTGCTG < 41bp 0.79628978928594 0.4700316311761 0.4223182 0.077462465 prediction 0.592579578571879 Functional Loss - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61511086 chr11:61511088 nonsynonymous SNV 0.786 1 23 hm5C_associated_SNPs_55174 0 0 0 0 1 DAGLA chr11:61511004 3'AG 61511004 Downstream 85bp
chr19 16337312 16337312 1 + G T SARC 16337309 + 16337289 16337329 41 GTCTTCCTCTCGGGCATGCCCGAGCTGCGCCTGGGCCTCAA GTCTTCCTCTCGGGCATGCCCGATCTGCGCCTGGGCCTCAA < 41bp 0.796266483713069 0.408445728322895 0.8829117 0.20835835 prediction 0.592532967426138 Functional Loss - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16337309 chr19:16337312 nonsynonymous SNV 0.806 1 24 hm5C_associated_SNPs_55179 0 0 1 0 2 AP1M1 chr19:16337232 3'AG 16337232 Downstream 81bp
chr19 16337312 16337312 1 + G T SARC 16337309 + 16337289 16337329 41 GTCTTCCTCTCGGGCATGCCCGAGCTGCGCCTGGGCCTCAA GTCTTCCTCTCGGGCATGCCCGATCTGCGCCTGGGCCTCAA < 41bp 0.796266483713069 0.408445728322895 0.8829117 0.20835835 prediction 0.592532967426138 Functional Loss - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16337309 chr19:16337312 nonsynonymous SNV 0.806 1 24 hm5C_associated_SNPs_55179 0 0 1 0 2 AP1M1 chr19:16337358 5'GT 16337358 Upstream 47bp
chr9 136268936 136268936 1 + G T STAD 136268933 + 136268913 136268953 41 GAAGCCAGCTGCGGAGTCTTCTGGCTGCTGTCCCTGCTGGG GAAGCCAGCTGCGGAGTCTTCTGTCTGCTGTCCCTGCTGGG < 41bp 0.796264606986766 0.410639948446941 0.8869812 0.15099445 prediction 0.592529213973532 Functional Loss - STKLD1 ENSG00000198870 CDS Human protein_coding chr9:136268933 chr9:136268936 nonsynonymous SNV 0.987 4 24 hm5C_associated_SNPs_55180 0 0 0 0 1 STKLD1 chr9:136268952 5'GT 136268952 Upstream 17bp
chr7 99995535 99995535 1 + G T BLCA 99995533 + 99995513 99995553 41 ACTAAAGCCACAACCCCAGCCAGGTGAGTGCTGGGCCTCCC ACTAAAGCCACAACCCCAGCCATGTGAGTGCTGGGCCTCCC < 41bp 0.7962535786575 0.467996099223962 0.8840393 0.72660697 prediction 0.592507157314999 Functional Loss - PILRA ENSG00000085514 CDS Human protein_coding chr7:99995533 chr7:99995535 nonsynonymous SNV 0.633 1 23 hm5C_associated_SNPs_55181 0 0 0 0 2 PILRA chr7:99995502 3'AG 99995502 Downstream 34bp
chr7 99995535 99995535 1 + G T BLCA 99995533 + 99995513 99995553 41 ACTAAAGCCACAACCCCAGCCAGGTGAGTGCTGGGCCTCCC ACTAAAGCCACAACCCCAGCCATGTGAGTGCTGGGCCTCCC < 41bp 0.7962535786575 0.467996099223962 0.8840393 0.72660697 prediction 0.592507157314999 Functional Loss - PILRA ENSG00000085514 CDS Human protein_coding chr7:99995533 chr7:99995535 nonsynonymous SNV 0.633 1 23 hm5C_associated_SNPs_55181 0 0 0 0 2 PILRA chr7:99995535 5'GT 99995535 Upstream 1bp
chr2 71825794 71825794 1 + G T HNSC 71825791 + 71825771 71825811 41 GACCAGACGCTCATCTTCTACGAGATCGAGATCTTTGGCGA GACCAGACGCTCATCTTCTACGATATCGAGATCTTTGGCGA < 41bp 0.819983136696998 0.523757202552804 0.31433517 0.029140204 prediction 0.592451868288388 Functional Loss - DYSF ENSG00000135636 CDS Human protein_coding chr2:71825791 chr2:71825794 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_55186 0 0 0 0 1 DYSF chr2:71825875 5'GT 71825875 Upstream 82bp
chr8 21859658 21859658 1 + G T COAD 21859655 + 21859635 21859675 41 GCACAGGCTGCTGCTCCTGCCTGGACCACATTGTGACATAC GCACAGGCTGCTGCTCCTGCCTGTACCACATTGTGACATAC < 41bp 0.796220197619448 0.427241152438697 0.32083708 0.055404514 prediction 0.592440395238895 Functional Loss - XPO7 ENSG00000130227 CDS Human protein_coding chr8:21859655 chr8:21859658 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_55189 0 0 1 0 1 XPO7 chr8:21859623 3'AG 21859623 Downstream 36bp
chr3 100058764 100058764 1 + A T LUAD 100058760 + 100058740 100058780 41 TCTGAAGTAGCAAAGGAATGCAGCATATATCTCATTGGAGG TCTGAAGTAGCAAAGGAATGCAGCTTATATCTCATTGGAGG < 41bp 0.820251219729483 0.524034842835313 0.3539402 0.3414274 prediction 0.59243275378834 Functional Loss - NIT2 ENSG00000114021 CDS Human protein_coding chr3:100058760 chr3:100058764 nonsynonymous SNV 0.983 1 25 hm5C_associated_SNPs_55192 0 0 0 0 1 NIT2 chr3:100058779 5'GT 100058779 Upstream 16bp
chr1 45223725 45223725 1 + G T LUAD 45223723 + 45223703 45223743 41 CAAAGTTCTCTCCCTCAGCCCGGGACGTCTTCCTCCTGAAG CAAAGTTCTCTCCCTCAGCCCGTGACGTCTTCCTCCTGAAG < 41bp 0.796214024861581 0.469513339187829 0.5807423 0.09884444 prediction 0.592428049723162 Functional Loss - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45223723 chr1:45223725 synonymous SNV . 0 23 hm5C_associated_SNPs_55193 0 0 1 0 2 KIF2C chr1:45223721 3'AG 45223721 Downstream 5bp
chr1 45223725 45223725 1 + G T LUAD 45223723 + 45223703 45223743 41 CAAAGTTCTCTCCCTCAGCCCGGGACGTCTTCCTCCTGAAG CAAAGTTCTCTCCCTCAGCCCGTGACGTCTTCCTCCTGAAG < 41bp 0.796214024861581 0.469513339187829 0.5807423 0.09884444 prediction 0.592428049723162 Functional Loss - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45223723 chr1:45223725 synonymous SNV . 0 23 hm5C_associated_SNPs_55193 0 0 1 0 2 KIF2C chr1:45223812 5'GT 45223812 Upstream 88bp
chr17 32612886 32612886 1 + A T rs201817073 32612882 + 32612862 32612902 41 TCATAGCAGCTGCCTTCAGCCCCCAGGGGCTCGCTGGGCCA TCATAGCAGCTGCCTTCAGCCCCCTGGGGCTCGCTGGGCCA < 41bp 0.796205759060448 0.499644221841152 0.2659381 0.22595513 prediction 0.592411518120895 Functional Loss - CCL11 ENSG00000172156 CDS Human protein_coding chr17:32612882 chr17:32612886 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_55194 0 0 0 0 1 CCL11 chr17:32612903 5'GT 32612903 Upstream 18bp
chr19 50939062 50939062 1 + G T rs375528821 50939060 + 50939040 50939080 41 ACCCGAGGACCAGTCCCCGACTGCAGAGGAGCCCACCGGCG ACCCGAGGACCAGTCCCCGACTTCAGAGGAGCCCACCGGCG < 41bp 0.839665241420769 0.543486281179904 0.40983742 0.37915644 prediction 0.592357920481731 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50939060 chr19:50939062 nonsynonymous SNV 0.829 0 23 hm5C_associated_SNPs_55197 0 0 0 0 2 MYBPC2 chr19:50939033 3'AG 50939033 Downstream 30bp
chr19 50939062 50939062 1 + G T rs375528821 50939060 + 50939040 50939080 41 ACCCGAGGACCAGTCCCCGACTGCAGAGGAGCCCACCGGCG ACCCGAGGACCAGTCCCCGACTTCAGAGGAGCCCACCGGCG < 41bp 0.839665241420769 0.543486281179904 0.40983742 0.37915644 prediction 0.592357920481731 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50939060 chr19:50939062 nonsynonymous SNV 0.829 0 23 hm5C_associated_SNPs_55197 0 0 0 0 2 MYBPC2 chr19:50939119 5'GT 50939119 Upstream 58bp
chr12 8610506 8610506 1 + G T STAD 8610504 + 8610484 8610524 41 GATTGGACAGAGAAAAGAGGCTGGTTGTCCCTGAGACTCTG GATTGGACAGAGAAAAGAGGCTTGTTGTCCCTGAGACTCTG < 41bp 0.829609262716238 0.533467163444439 0.117399275 0.13351694 prediction 0.592284198543598 Functional Loss - CLEC6A ENSG00000205846 CDS Human protein_coding chr12:8610504 chr12:8610506 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_55201 0 0 0 0 2 CLEC6A chr12:8610494 3'AG 8610494 Downstream 13bp
chr12 8610506 8610506 1 + G T STAD 8610504 + 8610484 8610524 41 GATTGGACAGAGAAAAGAGGCTGGTTGTCCCTGAGACTCTG GATTGGACAGAGAAAAGAGGCTTGTTGTCCCTGAGACTCTG < 41bp 0.829609262716238 0.533467163444439 0.117399275 0.13351694 prediction 0.592284198543598 Functional Loss - CLEC6A ENSG00000205846 CDS Human protein_coding chr12:8610504 chr12:8610506 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_55201 0 0 0 0 2 CLEC6A chr12:8610583 5'GT 8610583 Upstream 78bp
chr11 126126653 126126653 1 + G T OV 126126650 + 126126630 126126670 41 CTTCGAGAAAACATGCTGGACAAGGGGATTAAAGTCATCTC CTTCGAGAAAACATGCTGGACAATGGGATTAAAGTCATCTC < 41bp 0.796139699756102 0.429217621020174 0.21927655 0.056949914 prediction 0.592279399512203 Functional Loss - FAM118B ENSG00000197798 CDS Human protein_coding chr11:126126650 chr11:126126653 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_55202 0 0 1 0 1 FAM118B chr11:126126747 5'GT 126126747 Upstream 95bp
chr12 126128737 126128737 1 + G T HNSC 126128735 + 126128715 126128755 41 TCCCAGTTCGAGGTCACTGTCTGGGCACCCAGGCTCCCCCT TCCCAGTTCGAGGTCACTGTCTTGGCACCCAGGCTCCCCCT < 41bp 0.853501799481191 0.557364795418401 0.93635404 0.16645363 prediction 0.59227400812558 Functional Loss - TMEM132B ENSG00000139364 CDS Human protein_coding chr12:126128735 chr12:126128737 nonsynonymous SNV 0.888 4 23 hm5C_associated_SNPs_55203 0 0 0 0 1 TMEM132B chr12:126128827 5'GT 126128827 Upstream 91bp
chr3 42949531 42949531 1 + G T UCEC 42949528 + 42949508 42949548 41 TTTCAGGAGTCAGTGACCTTCGAGGATGTGGCCGTCTACTT TTTCAGGAGTCAGTGACCTTCGATGATGTGGCCGTCTACTT < 41bp 0.796132781338911 0.427391688391566 0.8832134 0.17192814 prediction 0.592265562677822 Functional Loss - ZNF662 ENSG00000182983 CDS Human protein_coding chr3:42949528 chr3:42949531 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_55205 0 0 0 0 1 ZNF662 chr3:42949514 3'AG 42949514 Downstream 18bp
chr5 76173537 76173537 1 + G T ACC 76173535 + 76173515 76173555 41 AGTTGGTTGATAAGATAGTGCAGGACCTGGATGCCAATAAG AGTTGGTTGATAAGATAGTGCATGACCTGGATGCCAATAAG < 41bp 0.796094773691052 0.489877037743126 0.26777238 0.044609725 prediction 0.592189547382105 Functional Loss - S100Z ENSG00000171643 CDS Human protein_coding chr5:76173535 chr5:76173537 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_55209 0 0 0 0 1 S100Z chr5:76173499 3'AG 76173499 Downstream 39bp
chr10 118314718 118314718 1 + G T LUSC 118314716 + 118314696 118314736 41 ACCCAGCAGAACCTTGCTTTCAGGGCACACCTGAATTAGTC ACCCAGCAGAACCTTGCTTTCATGGCACACCTGAATTAGTC < 41bp 0.850033921600633 0.553939319326683 0.92992973 0.6562682 prediction 0.5921892045479 Functional Loss - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314716 chr10:118314718 nonsynonymous SNV 0.885 1 23 hm5C_associated_SNPs_55210 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 92bp
chr6 25450214 25450214 1 + G T LUSC 25450211 + 25450191 25450231 41 ACAGCCAGACCGTGGCTGAGCAGGGCCCCTGTGGTGAGCAT ACAGCCAGACCGTGGCTGAGCAGTGCCCCTGTGGTGAGCAT < 41bp 0.796087774605644 0.421930938958564 0.7544646 0.050808012 prediction 0.592175549211288 Functional Loss - CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25450211 chr6:25450214 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_55211 0 0 0 0 2 CARMIL1 chr6:25450126 3'AG 25450126 Downstream 89bp
chr6 25450214 25450214 1 + G T LUSC 25450211 + 25450191 25450231 41 ACAGCCAGACCGTGGCTGAGCAGGGCCCCTGTGGTGAGCAT ACAGCCAGACCGTGGCTGAGCAGTGCCCCTGTGGTGAGCAT < 41bp 0.796087774605644 0.421930938958564 0.7544646 0.050808012 prediction 0.592175549211288 Functional Loss - CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25450211 chr6:25450214 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_55211 0 0 0 0 2 CARMIL1 chr6:25450223 5'GT 25450223 Upstream 10bp
chr15 42114273 42114273 1 + G T UCEC 42114271 + 42114251 42114291 41 GCCTGCTCTGTGGATTACAGCAGCAGCTGCCTTTCCAGCCC GCCTGCTCTGTGGATTACAGCATCAGCTGCCTTTCCAGCCC < 41bp 0.845162922057153 0.549094508042757 0.34695202 0.050685078 prediction 0.592136828028791 Functional Loss - MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42114271 chr15:42114273 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_55214 0 0 0 0 1 MAPKBP1 chr15:42114308 5'GT 42114308 Upstream 36bp
chr7 100470331 100470331 1 + G T LUAD 100470328 + 100470308 100470348 41 AGACTGTGAGAATTGTTGCTCTGGATCGAAGTTTTCACATT AGACTGTGAGAATTGTTGCTCTGTATCGAAGTTTTCACATT < 41bp 0.882473044309507 0.58641386935502 0.09153253 0.021076143 prediction 0.592118349908975 Functional Loss - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100470328 chr7:100470331 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_55217 0 0 1 0 2 TRIP6 chr7:100470246 3'AG 100470246 Downstream 86bp
chr7 100470331 100470331 1 + G T LUAD 100470328 + 100470308 100470348 41 AGACTGTGAGAATTGTTGCTCTGGATCGAAGTTTTCACATT AGACTGTGAGAATTGTTGCTCTGTATCGAAGTTTTCACATT < 41bp 0.882473044309507 0.58641386935502 0.09153253 0.021076143 prediction 0.592118349908975 Functional Loss - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100470328 chr7:100470331 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_55217 0 0 1 0 2 TRIP6 chr7:100470366 5'GT 100470366 Upstream 36bp
chr1 43312272 43312272 1 + A C rs568268113 43312268 + 43312248 43312288 41 TTCCTGGGTTCCGGCTCCGGCTCCAGCTCCTTCCCTCGCCT TTCCTGGGTTCCGGCTCCGGCTCCCGCTCCTTCCCTCGCCT < 41bp 0.79605274655307 0.40629893403582 0.40380386 0.16058135 prediction 0.59210549310614 Functional Loss - ZNF691 ENSG00000164011;ENSG00000228192 upstream Human protein_coding chr1:43312268 chr1:43312272 . . 0 25 hm5C_associated_SNPs_55218 0 0 0 0 1 ZNF691 chr1:43312328 5'GT 43312328 Upstream 57bp
chr3 52833906 52833906 1 + G T UCEC 52833903 + 52833883 52833923 41 CCCGAGAACCTCCAGGAGGCCAGGACGTTTGTGAAGAGCAT CCCGAGAACCTCCAGGAGGCCAGTACGTTTGTGAAGAGCAT < 41bp 0.796048602607374 0.411354627286557 0.3591675 0.19123802 prediction 0.592097205214747 Functional Loss - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52833903 chr3:52833906 nonsynonymous SNV 0.651 1 24 hm5C_associated_SNPs_55219 0 0 1 0 1 ITIH3 chr3:52833937 5'GT 52833937 Upstream 32bp
chr2 7027214 7027214 1 + G T UCEC 7027211 + 7027191 7027231 41 AGGGATTATAGAGTCGCTTTCAAGATAAATTCTGTCATTAA AGGGATTATAGAGTCGCTTTCAATATAAATTCTGTCATTAA < 41bp 0.796034586795315 0.431072563733283 0.9030169 0.15130112 prediction 0.59206917359063 Functional Loss - RSAD2 ENSG00000134321 CDS Human protein_coding chr2:7027211 chr2:7027214 nonsynonymous SNV 0.992 5 24 hm5C_associated_SNPs_55220 0 0 0 0 1 RSAD2 chr2:7027295 5'GT 7027295 Upstream 82bp
chr2 172398126 172398126 1 + G T UCEC 172398123 + 172398103 172398143 41 GTCTACAGACTGCCGTGGACCTGGAAATGCAGCAAGCTCCT GTCTACAGACTGCCGTGGACCTGTAAATGCAGCAAGCTCCT < 41bp 0.877277520967947 0.581243184823333 0.12218717 0.044598788 prediction 0.592068672289227 Functional Loss - CYBRD1 ENSG00000071967 CDS Human protein_coding chr2:172398123 chr2:172398126 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_55221 0 0 1 0 1 CYBRD1 chr2:172398095 3'AG 172398095 Downstream 32bp
chr1 3386008 3386008 1 + G T LUSC 3386005 + 3385985 3386025 41 CCCTCTCCACAGGCCATGTTCGAGATCCTCACGTCGGAGTT CCCTCTCCACAGGCCATGTTCGATATCCTCACGTCGGAGTT < 41bp 0.891673352353474 0.595652514995083 0.57435364 0.07750887 prediction 0.592041674716781 Functional Loss - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3386005 chr1:3386008 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55223 0 0 1 0 1 ARHGEF16 chr1:3385997 3'AG 3385997 Downstream 12bp
chr1 75606709 75606709 1 + A T UCEC 75606705 + 75606685 75606725 41 TGGCATGTCCGGTGTCTCTCCTGCAGTGTTTGCAGAACCTC TGGCATGTCCGGTGTCTCTCCTGCTGTGTTTGCAGAACCTC < 41bp 0.835912190961578 0.539895952240124 0.16025114 0.2982667 prediction 0.592032477442908 Functional Loss - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75606705 chr1:75606709 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_55224 0 0 0 0 2 LHX8 chr1:75606670 3'AG 75606670 Downstream 40bp
chr1 75606709 75606709 1 + A T UCEC 75606705 + 75606685 75606725 41 TGGCATGTCCGGTGTCTCTCCTGCAGTGTTTGCAGAACCTC TGGCATGTCCGGTGTCTCTCCTGCTGTGTTTGCAGAACCTC < 41bp 0.835912190961578 0.539895952240124 0.16025114 0.2982667 prediction 0.592032477442908 Functional Loss - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75606705 chr1:75606709 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_55224 0 0 0 0 2 LHX8 chr1:75606791 5'GT 75606791 Upstream 83bp
chrX 100402971 100402971 1 + G T GBM 100402968 + 100402948 100402988 41 ATTTCAGCAGCAAGACTTATCAAGAATTTAATCACTATTTG ATTTCAGCAGCAAGACTTATCAATAATTTAATCACTATTTG < 41bp 0.795997860926047 0.438733256242407 0.2580189 0.10686809 prediction 0.591995721852095 Functional Loss - CENPI ENSG00000102384 CDS Human protein_coding chrX:100402968 chrX:100402971 stopgain 0.648 1 24 hm5C_associated_SNPs_55226 0 0 1 0 1 CENPI chrX:100402932 3'AG 100402932 Downstream 40bp
chr19 55177723 55177723 1 + G T BLCA 55177721 + 55177701 55177741 41 GGCTGATTTCCAACGTCCTCCAGGGGCTGCCGAGCCAGAGC GGCTGATTTCCAACGTCCTCCATGGGCTGCCGAGCCAGAGC < 41bp 0.795996641687343 0.46023009365211 0.82366735 0.27866137 prediction 0.591993283374687 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55177721 chr19:55177723 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_55227 0 0 0 0 2 LILRB4 chr19:55177691 3'AG 55177691 Downstream 33bp
chr19 55177723 55177723 1 + G T BLCA 55177721 + 55177701 55177741 41 GGCTGATTTCCAACGTCCTCCAGGGGCTGCCGAGCCAGAGC GGCTGATTTCCAACGTCCTCCATGGGCTGCCGAGCCAGAGC < 41bp 0.795996641687343 0.46023009365211 0.82366735 0.27866137 prediction 0.591993283374687 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55177721 chr19:55177723 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_55227 0 0 0 0 2 LILRB4 chr19:55177766 5'GT 55177766 Upstream 44bp
chr17 48252755 48252755 1 + G T LUAD 48252753 + 48252733 48252773 41 ACAGGTGAGCGGCTGCCTCCCCGCGTGGACAGCGCCCAGGT ACAGGTGAGCGGCTGCCTCCCCTCGTGGACAGCGCCCAGGT < 41bp 0.795991703199101 0.47080098092243 0.0868811 0.033675015 prediction 0.591983406398201 Functional Loss - SGCA ENSG00000108823 CDS Human transcribed_unitary_pseudogene chr17:48252753 chr17:48252755 nonsynonymous SNV 0.747 1 23 hm5C_associated_SNPs_55228 0 0 0 0 1 SGCA chr17:48252810 5'GT 48252810 Upstream 56bp
chrX 49355839 49355839 1 + G T LUSC 49355837 + 49355817 49355857 41 TGAAGTGGAACCAGCAACACCTGAAGAAGGGGAACCAGCAA TGAAGTGGAACCAGCAACACCTTAAGAAGGGGAACCAGCAA < 41bp 0.818174946673826 0.522192077357127 0.24254993 0.09170243 prediction 0.591965738633397 Functional Loss - GAGE2A ENSG00000189064 CDS Human protein_coding chrX:49355837 chrX:49355839 stopgain 0.000 0 23 hm5C_associated_SNPs_55231 0 0 0 0 2 GAGE2A chrX:49355800 3'AG 49355800 Downstream 40bp
chrX 49355839 49355839 1 + G T LUSC 49355837 + 49355817 49355857 41 TGAAGTGGAACCAGCAACACCTGAAGAAGGGGAACCAGCAA TGAAGTGGAACCAGCAACACCTTAAGAAGGGGAACCAGCAA < 41bp 0.818174946673826 0.522192077357127 0.24254993 0.09170243 prediction 0.591965738633397 Functional Loss - GAGE2A ENSG00000189064 CDS Human protein_coding chrX:49355837 chrX:49355839 stopgain 0.000 0 23 hm5C_associated_SNPs_55231 0 0 0 0 2 GAGE2A chrX:49355920 5'GT 49355920 Upstream 82bp
chrX 37955474 37955474 1 + G T SARC 37955471 + 37955451 37955491 41 CATAAGAAGCAAGTCTGTCCCTGGGGCTTTAGACAAGGTAA CATAAGAAGCAAGTCTGTCCCTGTGGCTTTAGACAAGGTAA < 41bp 0.795980275218627 0.428946078331542 0.6226867 0.15594143 prediction 0.591960550437254 Functional Loss - SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37955471 chrX:37955474 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_55233 0 0 0 0 2 SYTL5 chrX:37955387 3'AG 37955387 Downstream 88bp
chrX 37955474 37955474 1 + G T SARC 37955471 + 37955451 37955491 41 CATAAGAAGCAAGTCTGTCCCTGGGGCTTTAGACAAGGTAA CATAAGAAGCAAGTCTGTCCCTGTGGCTTTAGACAAGGTAA < 41bp 0.795980275218627 0.428946078331542 0.6226867 0.15594143 prediction 0.591960550437254 Functional Loss - SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37955471 chrX:37955474 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_55233 0 0 0 0 2 SYTL5 chrX:37955487 5'GT 37955487 Upstream 14bp
chr17 37815776 37815776 1 + G T LUAD 37815774 + 37815754 37815794 41 TGGTGGACCAGATCTTGGCCCAGGAAGAGAACTGGAAGTTT TGGTGGACCAGATCTTGGCCCATGAAGAGAACTGGAAGTTT < 41bp 0.795946837634586 0.473243787349356 0.16987467 0.07682094 prediction 0.591893675269173 Functional Loss - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37815774 chr17:37815776 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_55236 0 0 1 1 2 STARD3 chr17:37815714 3'AG 37815714 Downstream 63bp
chr17 37815776 37815776 1 + G T LUAD 37815774 + 37815754 37815794 41 TGGTGGACCAGATCTTGGCCCAGGAAGAGAACTGGAAGTTT TGGTGGACCAGATCTTGGCCCATGAAGAGAACTGGAAGTTT < 41bp 0.795946837634586 0.473243787349356 0.16987467 0.07682094 prediction 0.591893675269173 Functional Loss - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37815774 chr17:37815776 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_55236 0 0 1 1 2 STARD3 chr17:37815806 5'GT 37815806 Upstream 31bp
chrX 35993994 35993994 1 + G T LUAD 35993992 + 35993972 35994012 41 TCAATGGCAACCCGTAAACACAGGAAGAGGGATAGCATTTT TCAATGGCAACCCGTAAACACATGAAGAGGGATAGCATTTT < 41bp 0.806684893286635 0.51075023981081 0.73702466 0.30301648 prediction 0.591869306951649 Functional Loss - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35993992 chrX:35993994 stopgain 0.283 0 23 hm5C_associated_SNPs_55238 0 0 0 0 1 CFAP47 chrX:35994030 5'GT 35994030 Upstream 37bp
chr19 19606951 19606951 1 + G T LUAD 19606948 + 19606928 19606968 41 CGGTGCCCAGTGTGCAGATTCAGGGACAGAGGATCATCCAG CGGTGCCCAGTGTGCAGATTCAGTGACAGAGGATCATCCAG < 41bp 0.894282669075949 0.598385706646704 0.9218401 0.32823882 prediction 0.59179392485849 Functional Loss - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19606948 chr19:19606951 stopgain 1.000 1 24 hm5C_associated_SNPs_55242 0 0 1 0 2 GATAD2A chr19:19606861 3'AG 19606861 Downstream 91bp
chr19 19606951 19606951 1 + G T LUAD 19606948 + 19606928 19606968 41 CGGTGCCCAGTGTGCAGATTCAGGGACAGAGGATCATCCAG CGGTGCCCAGTGTGCAGATTCAGTGACAGAGGATCATCCAG < 41bp 0.894282669075949 0.598385706646704 0.9218401 0.32823882 prediction 0.59179392485849 Functional Loss - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19606948 chr19:19606951 stopgain 1.000 1 24 hm5C_associated_SNPs_55242 0 0 1 0 2 GATAD2A chr19:19607028 5'GT 19607028 Upstream 78bp
chr1 17296381 17296381 1 + G T LUAD 17296379 + 17296359 17296399 41 TGCGAGGCGAGGTGGCTGACCTGGAACTGCAGCGGGTGGAG TGCGAGGCGAGGTGGCTGACCTTGAACTGCAGCGGGTGGAG < 41bp 0.826354387882399 0.530472063567519 0.7826107 0.37336338 prediction 0.591764648629759 Functional Loss - CROCC ENSG00000058453 CDS Human protein_coding chr1:17296379 chr1:17296381 synonymous SNV . 0 23 hm5C_associated_SNPs_55244 0 0 1 0 1 CROCC chr1:17296429 5'GT 17296429 Upstream 49bp
chr5 1235772 1235772 1 + G T LGG 1235770 + 1235750 1235790 41 CATCAGGGGCATTGAGACTACAGGGAAGGTGAGAGCTGGCA CATCAGGGGCATTGAGACTACATGGAAGGTGAGAGCTGGCA < 41bp 0.847426547351357 0.551547297754818 0.8191666 0.70892125 prediction 0.591758499193077 Functional Loss - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1235770 chr5:1235772 nonsynonymous SNV 0.847 4 23 hm5C_associated_SNPs_55245 0 0 0 0 1 SLC6A18 chr5:1235777 5'GT 1235777 Upstream 6bp
chr11 76823691 76823691 1 + G T UCEC 76823688 + 76823668 76823708 41 CCCGAAAAGCCCAACGCCTACGCGGGCATCTTCCACTTCCA CCCGAAAAGCCCAACGCCTACGCTGGCATCTTCCACTTCCA < 41bp 0.795865266723236 0.403675703557849 0.13557354 0.01825279 prediction 0.591730533446472 Functional Loss - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76823688 chr11:76823691 synonymous SNV . 0 24 hm5C_associated_SNPs_55246 0 0 1 0 1 CAPN5 chr11:76823635 3'AG 76823635 Downstream 57bp
chr20 62659905 62659905 1 + A C UCEC 62659901 + 62659881 62659921 41 ATACACTCATGGCCAAGGCGCTGCAGGAGTGCCCCAACTCC ATACACTCATGGCCAAGGCGCTGCCGGAGTGCCCCAACTCC < 41bp 0.79586316429105 0.38259241340628 0.28391805 0.17310527 prediction 0.5917263285821 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62659901 chr20:62659905 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_55248 0 0 1 0 2 PRPF6 chr20:62659831 3'AG 62659831 Downstream 75bp
chr20 62659905 62659905 1 + A C UCEC 62659901 + 62659881 62659921 41 ATACACTCATGGCCAAGGCGCTGCAGGAGTGCCCCAACTCC ATACACTCATGGCCAAGGCGCTGCCGGAGTGCCCCAACTCC < 41bp 0.79586316429105 0.38259241340628 0.28391805 0.17310527 prediction 0.5917263285821 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62659901 chr20:62659905 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_55248 0 0 1 0 2 PRPF6 chr20:62659922 5'GT 62659922 Upstream 18bp
chr7 31732116 31732116 1 + G T LIHC 31732113 + 31732093 31732133 41 CAGAAGACAGACTGGACAAGCTAGACCCTCGTTGCAGCCAC CAGAAGACAGACTGGACAAGCTATACCCTCGTTGCAGCCAC < 41bp 0.875187590108567 0.579341534806916 0.24897316 0.2372382 prediction 0.591692110603302 Functional Loss - PPP1R17 ENSG00000106341 CDS Human protein_coding chr7:31732113 chr7:31732116 nonsynonymous SNV 0.206 3 24 hm5C_associated_SNPs_55250 0 0 0 0 2 PPP1R17 chr7:31732020 3'AG 31732020 Downstream 97bp
chr7 31732116 31732116 1 + G T LIHC 31732113 + 31732093 31732133 41 CAGAAGACAGACTGGACAAGCTAGACCCTCGTTGCAGCCAC CAGAAGACAGACTGGACAAGCTATACCCTCGTTGCAGCCAC < 41bp 0.875187590108567 0.579341534806916 0.24897316 0.2372382 prediction 0.591692110603302 Functional Loss - PPP1R17 ENSG00000106341 CDS Human protein_coding chr7:31732113 chr7:31732116 nonsynonymous SNV 0.206 3 24 hm5C_associated_SNPs_55250 0 0 0 0 2 PPP1R17 chr7:31732137 5'GT 31732137 Upstream 22bp
chr20 39974575 39974575 1 + G T LUAD 39974573 + 39974553 39974593 41 AGCAGGTGGACGGCTCGTTCCGGTGCTCACCCTTCCACGTG AGCAGGTGGACGGCTCGTTCCGTTGCTCACCCTTCCACGTG < 41bp 0.795834938763556 0.454371952580174 0.50372577 0.099234045 prediction 0.591669877527113 Functional Loss - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39974573 chr20:39974575 synonymous SNV . 0 23 hm5C_associated_SNPs_55251 0 0 0 0 1 LPIN3 chr20:39974635 5'GT 39974635 Upstream 61bp
chr11 15222419 15222419 1 + G T LUSC 15222417 + 15222397 15222437 41 GTTTGCCGGCAGGACAGTTTCCGGTGCTTGTACCCCCAGGC GTTTGCCGGCAGGACAGTTTCCTGTGCTTGTACCCCCAGGC < 41bp 0.795822708783618 0.452895392985217 0.8875975 0.2621343 prediction 0.591645417567236 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15222417 chr11:15222419 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_55252 0 0 0 0 2 INSC chr11:15222370 3'AG 15222370 Downstream 50bp
chr11 15222419 15222419 1 + G T LUSC 15222417 + 15222397 15222437 41 GTTTGCCGGCAGGACAGTTTCCGGTGCTTGTACCCCCAGGC GTTTGCCGGCAGGACAGTTTCCTGTGCTTGTACCCCCAGGC < 41bp 0.795822708783618 0.452895392985217 0.8875975 0.2621343 prediction 0.591645417567236 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15222417 chr11:15222419 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_55252 0 0 0 0 2 INSC chr11:15222495 5'GT 15222495 Upstream 77bp
chr17 33318029 33318029 1 + G T UCEC 33318027 + 33318007 33318047 41 AACAGTGAAGCTGCTGCTGCCAGGAGTCATTAAGACTGTTT AACAGTGAAGCTGCTGCTGCCATGAGTCATTAAGACTGTTT < 41bp 0.837796169484143 0.54198842911457 0.8724345 0.08696598 prediction 0.591615480739147 Functional Loss - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33318027 chr17:33318029 stopgain 0.994 1 23 hm5C_associated_SNPs_55254 0 0 1 0 1 LIG3 chr17:33317982 3'AG 33317982 Downstream 48bp
chrX 49105132 49105132 1 + G T LIHC 49105130 + 49105110 49105150 41 GGCTGGCAGAGATCCAAGAACTGCACCAGAGTGTCCGGGCG GGCTGGCAGAGATCCAAGAACTTCACCAGAGTGTCCGGGCG < 41bp 0.838692407029361 0.54290394891465 0.5734514 0.12888324 prediction 0.591576916229421 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49105130 chrX:49105132 synonymous SNV . 0 23 hm5C_associated_SNPs_55259 0 0 1 0 2 CCDC22 chrX:49105094 3'AG 49105094 Downstream 39bp
chrX 49105132 49105132 1 + G T LIHC 49105130 + 49105110 49105150 41 GGCTGGCAGAGATCCAAGAACTGCACCAGAGTGTCCGGGCG GGCTGGCAGAGATCCAAGAACTTCACCAGAGTGTCCGGGCG < 41bp 0.838692407029361 0.54290394891465 0.5734514 0.12888324 prediction 0.591576916229421 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49105130 chrX:49105132 synonymous SNV . 0 23 hm5C_associated_SNPs_55259 0 0 1 0 2 CCDC22 chrX:49105195 5'GT 49105195 Upstream 64bp
chr5 36679893 36679893 1 + G T STAD 36679890 + 36679870 36679910 41 ACTCCTCTACTTCTTGGTAACACGGAAAAACCCTTGGGTTT ACTCCTCTACTTCTTGGTAACACTGAAAAACCCTTGGGTTT < 41bp 0.795782321278739 0.426623541857321 0.24557099 0.20572141 prediction 0.591564642557478 Functional Loss - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36679890 chr5:36679893 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_55261 0 0 0 0 1 SLC1A3 chr5:36679962 5'GT 36679962 Upstream 70bp
chr8 11213739 11213739 1 + A C rs200801969 11213735 + 11213715 11213755 41 CATCTCCCCTCGGCAAATTCCAGCAGATGCTAACTTCCACT CATCTCCCCTCGGCAAATTCCAGCCGATGCTAACTTCCACT < 41bp 0.795778534875394 0.423343446101308 0.8080107 0.8350437 prediction 0.591557069750787 Functional Loss - TDH ENSG00000154316 ncRNA_exonic Human transcribed_unitary_pseudogene chr8:11213735 chr8:11213739 . . 0 25 hm5C_associated_SNPs_55262 0 0 0 0 1 TDH chr8:11213800 5'GT 11213800 Upstream 62bp
chr2 231867410 231867410 1 + G T UCEC 231867407 + 231867387 231867427 41 TTTGCTCTACAGAAAATCTTCAAGAAAACCCTCCAGTCATC TTTGCTCTACAGAAAATCTTCAATAAAACCCTCCAGTCATC < 41bp 0.795768558487203 0.425525772316272 0.007915884 0.002811581 prediction 0.591537116974407 Functional Loss - SPATA3 ENSG00000173699 CDS Human protein_coding chr2:231867407 chr2:231867410 stopgain 0.009 2 24 hm5C_associated_SNPs_55264 0 0 0 0 1 SPATA3 chr2:231867399 3'AG 231867399 Downstream 12bp
chr4 159140489 159140489 1 + A C UCEC 159140485 + 159140465 159140505 41 TGGCTGGTTTGGATTGGATGCAGAAGAAGTATCAAATCCGC TGGCTGGTTTGGATTGGATGCAGACGAAGTATCAAATCCGC < 41bp 0.795767111386201 0.410732099189552 0.41175252 0.32306218 prediction 0.591534222772401 Functional Loss - TMEM144 ENSG00000164124 CDS Human protein_coding chr4:159140485 chr4:159140489 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_55265 0 0 1 2 2 TMEM144 chr4:159140462 3'AG 159140462 Downstream 28bp
chr4 159140489 159140489 1 + A C UCEC 159140485 + 159140465 159140505 41 TGGCTGGTTTGGATTGGATGCAGAAGAAGTATCAAATCCGC TGGCTGGTTTGGATTGGATGCAGACGAAGTATCAAATCCGC < 41bp 0.795767111386201 0.410732099189552 0.41175252 0.32306218 prediction 0.591534222772401 Functional Loss - TMEM144 ENSG00000164124 CDS Human protein_coding chr4:159140485 chr4:159140489 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_55265 0 0 1 2 2 TMEM144 chr4:159140542 5'GT 159140542 Upstream 54bp
chr19 806485 806485 1 + G T LUSC 806483 + 806463 806503 41 GGCGGCGGCAGCTGCGGCGGCAGGTCGGATCGCCATCCCGG GGCGGCGGCAGCTGCGGCGGCATGTCGGATCGCCATCCCGG < 41bp 0.79576164036985 0.452197792122959 0.8765315 0.6691519 prediction 0.591523280739701 Functional Loss - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806483 chr19:806485 nonsynonymous SNV 0.021 2 23 hm5C_associated_SNPs_55266 0 0 1 0 2 PTBP1 chr19:806408 3'AG 806408 Downstream 78bp
chr19 806485 806485 1 + G T LUSC 806483 + 806463 806503 41 GGCGGCGGCAGCTGCGGCGGCAGGTCGGATCGCCATCCCGG GGCGGCGGCAGCTGCGGCGGCATGTCGGATCGCCATCCCGG < 41bp 0.79576164036985 0.452197792122959 0.8765315 0.6691519 prediction 0.591523280739701 Functional Loss - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806483 chr19:806485 nonsynonymous SNV 0.021 2 23 hm5C_associated_SNPs_55266 0 0 1 0 2 PTBP1 chr19:806556 5'GT 806556 Upstream 72bp
chr11 1974067 1974067 1 + G T PAAD 1974064 + 1974044 1974084 41 AGGATCAAGAAGCCGGACTACAAGGTCGCCTACGTGCAGCT AGGATCAAGAAGCCGGACTACAATGTCGCCTACGTGCAGCT < 41bp 0.795756712754095 0.416607423767898 0.16320899 0.04928884 prediction 0.59151342550819 Functional Loss - MRPL23 ENSG00000214026 CDS Human protein_coding chr11:1974064 chr11:1974067 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_55267 0 0 1 0 2 MRPL23 chr11:1974012 3'AG 1974012 Downstream 56bp
chr11 1974067 1974067 1 + G T PAAD 1974064 + 1974044 1974084 41 AGGATCAAGAAGCCGGACTACAAGGTCGCCTACGTGCAGCT AGGATCAAGAAGCCGGACTACAATGTCGCCTACGTGCAGCT < 41bp 0.795756712754095 0.416607423767898 0.16320899 0.04928884 prediction 0.59151342550819 Functional Loss - MRPL23 ENSG00000214026 CDS Human protein_coding chr11:1974064 chr11:1974067 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_55267 0 0 1 0 2 MRPL23 chr11:1974085 5'GT 1974085 Upstream 19bp
chr16 3338556 3338556 1 + G T PAAD 3338554 + 3338534 3338574 41 TGCAAGGAGGGCCTGAGCCCCAGAGGCCCAGCTCCAGGTAA TGCAAGGAGGGCCTGAGCCCCATAGGCCCAGCTCCAGGTAA < 41bp 0.795753977011741 0.453760872275473 0.88230634 0.2245146 prediction 0.591507954023482 Functional Loss - ZNF263 ENSG00000006194 CDS Human protein_coding chr16:3338554 chr16:3338556 nonsynonymous SNV 0.034 0 23 hm5C_associated_SNPs_55268 0 0 1 0 1 ZNF263 chr16:3338570 5'GT 3338570 Upstream 15bp
chr16 50664741 50664741 1 + G T LUAD 50664739 + 50664719 50664759 41 TTCTCGGGCCGGACTCAGACCTGCAGAGCGCAAGGCCCCGA TTCTCGGGCCGGACTCAGACCTTCAGAGCGCAAGGCCCCGA < 41bp 0.845525418065179 0.549784651508227 0.31645077 0.18758792 prediction 0.591481533113905 Functional Loss - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50664739 chr16:50664741 synonymous SNV . 0 23 hm5C_associated_SNPs_55269 0 0 1 0 2 NKD1 chr16:50664737 3'AG 50664737 Downstream 5bp
chr16 50664741 50664741 1 + G T LUAD 50664739 + 50664719 50664759 41 TTCTCGGGCCGGACTCAGACCTGCAGAGCGCAAGGCCCCGA TTCTCGGGCCGGACTCAGACCTTCAGAGCGCAAGGCCCCGA < 41bp 0.845525418065179 0.549784651508227 0.31645077 0.18758792 prediction 0.591481533113905 Functional Loss - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50664739 chr16:50664741 synonymous SNV . 0 23 hm5C_associated_SNPs_55269 0 0 1 0 2 NKD1 chr16:50664821 5'GT 50664821 Upstream 81bp
chr14 61995857 61995857 1 + A T KIRC 61995853 + 61995833 61995873 41 CACTGTAAACTGGCAGACTTCGGAATGTGCAAGGAGGGGAT CACTGTAAACTGGCAGACTTCGGATTGTGCAAGGAGGGGAT < 41bp 0.795725535248825 0.491598317098027 0.87583077 0.50370437 prediction 0.59145107049765 Functional Loss - PRKCH ENSG00000027075;ENSG00000258989 CDS Human protein_coding chr14:61995853 chr14:61995857 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_55273 0 0 1 0 2 PRKCH chr14:61995793 3'AG 61995793 Downstream 65bp
chr14 61995857 61995857 1 + A T KIRC 61995853 + 61995833 61995873 41 CACTGTAAACTGGCAGACTTCGGAATGTGCAAGGAGGGGAT CACTGTAAACTGGCAGACTTCGGATTGTGCAAGGAGGGGAT < 41bp 0.795725535248825 0.491598317098027 0.87583077 0.50370437 prediction 0.59145107049765 Functional Loss - PRKCH ENSG00000027075;ENSG00000258989 CDS Human other chr14:61995853 chr14:61995857 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_55273 0 0 1 0 2 PRKCH chr14:61995931 5'GT 61995931 Upstream 75bp
chr17 33504141 33504141 1 + G T LUSC 33504139 + 33504119 33504159 41 CAATCCGGACATTGCTTTTCCTGGGGAGCGGGTAGGTGCTT CAATCCGGACATTGCTTTTCCTTGGGAGCGGGTAGGTGCTT < 41bp 0.79572390286744 0.466622606505627 0.41494885 0.053772777 prediction 0.591447805734879 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33504139 chr17:33504141 nonsynonymous SNV 0.647 4 23 hm5C_associated_SNPs_55275 0 0 0 0 1 UNC45B chr17:33504149 5'GT 33504149 Upstream 9bp
chr16 31382535 31382535 1 + G T COAD 31382533 + 31382513 31382553 41 CGGGGCCAGGTGCTCCTGCTCAGGTGAGAGCAGCCTTTCTC CGGGGCCAGGTGCTCCTGCTCATGTGAGAGCAGCCTTTCTC < 41bp 0.795709008839363 0.455527531170049 0.9250252 0.7929894 prediction 0.591418017678726 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31382533 chr16:31382535 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_55276 0 0 0 0 1 ITGAX chr16:31382535 5'GT 31382535 Upstream 1bp
chrX 47069354 47069354 1 + G T CESC 47069352 + 47069332 47069372 41 CCAAGTTTGTGGAGCGAACACTGCGGCTGGCAGGCACTCAG CCAAGTTTGTGGAGCGAACACTTCGGCTGGCAGGCACTCAG < 41bp 0.842254994508913 0.546546681650575 0.7027997 0.40044963 prediction 0.591416625716678 Functional Loss - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47069352 chrX:47069354 synonymous SNV . 0 23 hm5C_associated_SNPs_55277 0 0 1 0 1 UBA1 chrX:47069327 3'AG 47069327 Downstream 28bp
chr7 142568588 142568588 1 + G T UCEC 142568586 + 142568566 142568606 41 GCATCACCCTGGCTGGCCACCAGAAGAAGCTGCTGCACCAC GCATCACCCTGGCTGGCCACCATAAGAAGCTGCTGCACCAC < 41bp 0.839872894534587 0.544182162671351 0.9356697 0.64356685 prediction 0.591381463726473 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142568586 chr7:142568588 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_55279 0 0 0 0 1 EPHB6 chr7:142568549 3'AG 142568549 Downstream 40bp
chrX 134683697 134683697 1 + A C UCEC 134683693 + 134683673 134683713 41 TGTTGGACATTGGCCAATTCCAGAATCTTTTTGGCCAGATC TGTTGGACATTGGCCAATTCCAGACTCTTTTTGGCCAGATC < 41bp 0.795677782332021 0.395604495065314 0.47386158 0.5273142 prediction 0.591355564664043 Functional Loss - INTS6L ENSG00000165359 CDS Human protein_coding chrX:134683693 chrX:134683697 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_55280 0 0 0 0 1 INTS6L chrX:134683730 5'GT 134683730 Upstream 34bp
chr19 3118943 3118943 1 + G T SKCM 3118941 + 3118921 3118961 41 GGATGGTGGATGTGGGGGGCCAGCGGTCGGAGCGGAGGAAG GGATGGTGGATGTGGGGGGCCATCGGTCGGAGCGGAGGAAG < 41bp 0.845120607747708 0.549445920168785 0.9139203 0.90861285 prediction 0.591349375157845 Functional Loss - GNA11 ENSG00000088256 CDS Human protein_coding chr19:3118941 chr19:3118943 nonsynonymous SNV 0.387 2 23 hm5C_associated_SNPs_55281 0 0 1 0 1 GNA11 chr19:3118922 3'AG 3118922 Downstream 22bp
chr20 49458360 49458360 1 + G T LUSC 49458357 + 49458337 49458377 41 TCCTGGAAGCAGACGTGCTTCAGGCTGAGCGGGACCATGGG TCCTGGAAGCAGACGTGCTTCAGTCTGAGCGGGACCATGGG < 41bp 0.795667303810907 0.410472307483648 0.87513614 0.7146737 prediction 0.591334607621814 Functional Loss - BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49458357 chr20:49458360 nonsynonymous SNV 0.116 4 24 hm5C_associated_SNPs_55282 0 0 0 0 2 BCAS4 chr20:49458303 3'AG 49458303 Downstream 58bp
chr20 49458360 49458360 1 + G T LUSC 49458357 + 49458337 49458377 41 TCCTGGAAGCAGACGTGCTTCAGGCTGAGCGGGACCATGGG TCCTGGAAGCAGACGTGCTTCAGTCTGAGCGGGACCATGGG < 41bp 0.795667303810907 0.410472307483648 0.87513614 0.7146737 prediction 0.591334607621814 Functional Loss - BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49458357 chr20:49458360 nonsynonymous SNV 0.116 4 24 hm5C_associated_SNPs_55282 0 0 0 0 2 BCAS4 chr20:49458437 5'GT 49458437 Upstream 78bp
chr20 49458359 49458359 1 + G T LUSC 49458357 + 49458337 49458377 41 TCCTGGAAGCAGACGTGCTTCAGGCTGAGCGGGACCATGGG TCCTGGAAGCAGACGTGCTTCATGCTGAGCGGGACCATGGG < 41bp 0.795667303810907 0.46276336844272 0.87513614 0.19441599 prediction 0.591334607621814 Functional Loss - BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49458357 chr20:49458359 nonsynonymous SNV 0.124 4 23 hm5C_associated_SNPs_55283 0 0 0 0 2 BCAS4 chr20:49458303 3'AG 49458303 Downstream 57bp
chr20 49458359 49458359 1 + G T LUSC 49458357 + 49458337 49458377 41 TCCTGGAAGCAGACGTGCTTCAGGCTGAGCGGGACCATGGG TCCTGGAAGCAGACGTGCTTCATGCTGAGCGGGACCATGGG < 41bp 0.795667303810907 0.46276336844272 0.87513614 0.19441599 prediction 0.591334607621814 Functional Loss - BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49458357 chr20:49458359 nonsynonymous SNV 0.124 4 23 hm5C_associated_SNPs_55283 0 0 0 0 2 BCAS4 chr20:49458437 5'GT 49458437 Upstream 79bp
chr16 31429674 31429674 1 + G T GBM 31429672 + 31429652 31429692 41 TACAAGGCCACCCTGGGAGACAGGATGCTTATGAGGGCCAG TACAAGGCCACCCTGGGAGACATGATGCTTATGAGGGCCAG < 41bp 0.795655592868209 0.45535039744695 0.34745598 0.37943548 prediction 0.591311185736418 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31429672 chr16:31429674 nonsynonymous SNV 0.816 3 23 hm5C_associated_SNPs_55284 0 0 0 0 2 ITGAD chr16:31429622 3'AG 31429622 Downstream 53bp
chr16 31429674 31429674 1 + G T GBM 31429672 + 31429652 31429692 41 TACAAGGCCACCCTGGGAGACAGGATGCTTATGAGGGCCAG TACAAGGCCACCCTGGGAGACATGATGCTTATGAGGGCCAG < 41bp 0.795655592868209 0.45535039744695 0.34745598 0.37943548 prediction 0.591311185736418 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31429672 chr16:31429674 nonsynonymous SNV 0.816 3 23 hm5C_associated_SNPs_55284 0 0 0 0 2 ITGAD chr16:31429701 5'GT 31429701 Upstream 28bp
chr10 135369391 135369391 1 - C G BLCA 135369392 - 135369372 135369412 41 TGCAGAGAAGCTGGTCAAGGCGACACTGGAAGACGTGAAGC TGCAGAGAAGCTGGTCAAGGCCACACTGGAAGACGTGAAGC < 41bp 0.79564105716911 0.496532547318813 0.27561796 0.08605245 prediction 0.591282114338221 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135369392 chr10:135369391 synonymous SNV . 0 22 hm5C_associated_SNPs_55286 0 0 0 0 1 SYCE1 chr10:135369407 3'AG 135369407 Downstream 17bp
chr9 92220065 92220065 1 + A C rs199566315 92220061 + 92220041 92220081 41 CTCTGGAAGAAGTCCGCGGCCAGGACACAGTTCCGGAAAGC CTCTGGAAGAAGTCCGCGGCCAGGCCACAGTTCCGGAAAGC < 41bp 0.878430215091989 0.58282244639608 0.64414054 0.6162038 prediction 0.591215537391819 Functional Loss - GADD45G ENSG00000130222 CDS Human protein_coding chr9:92220061 chr9:92220065 nonsynonymous SNV 0.888 0 25 hm5C_associated_SNPs_55289 0 0 0 0 1 GADD45G chr9:92220089 5'GT 92220089 Upstream 25bp
chr1 165859500 165859500 1 + G T UCEC 165859498 + 165859478 165859518 41 AGAATGAGGTGGACTATCGCCAGAAGCAGGTGGTCATCCTG AGAATGAGGTGGACTATCGCCATAAGCAGGTGGTCATCCTG < 41bp 0.847742897408056 0.552136480894137 0.9363527 0.90724593 prediction 0.591212833027836 Functional Loss - UCK2 ENSG00000143179 CDS Human protein_coding chr1:165859498 chr1:165859500 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_55290 0 0 1 0 1 UCK2 chr1:165859441 3'AG 165859441 Downstream 60bp
chr10 90438289 90438289 1 + G T BLCA 90438286 + 90438266 90438306 41 AGGACCTGTTGGCTGACCCCCAAGATGTTGGCCTTTTGCTT AGGACCTGTTGGCTGACCCCCAATATGTTGGCCTTTTGCTT < 41bp 0.795585507429154 0.420297228175874 0.3181585 0.14872646 prediction 0.591171014858308 Functional Loss - LIPF ENSG00000182333 CDS Human protein_coding chr10:90438286 chr10:90438289 nonsynonymous SNV 0.031 4 24 hm5C_associated_SNPs_55293 0 0 0 0 1 LIPF chr10:90438202 3'AG 90438202 Downstream 88bp
chr1 156841476 156841476 1 + G T ACC 156841474 + 156841454 156841494 41 AATGTCACCAGTGACCTCAACAGGAAGAACGTGACGTGCTG AATGTCACCAGTGACCTCAACATGAAGAACGTGACGTGCTG < 41bp 0.858220667950921 0.56264617931715 0.85071874 0.18853524 prediction 0.591148977267542 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156841474 chr1:156841476 nonsynonymous SNV 0.994 1 23 hm5C_associated_SNPs_55294 0 0 0 0 2 NTRK1 chr1:156841415 3'AG 156841415 Downstream 62bp
chr1 156841476 156841476 1 + G T ACC 156841474 + 156841454 156841494 41 AATGTCACCAGTGACCTCAACAGGAAGAACGTGACGTGCTG AATGTCACCAGTGACCTCAACATGAAGAACGTGACGTGCTG < 41bp 0.858220667950921 0.56264617931715 0.85071874 0.18853524 prediction 0.591148977267542 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156841474 chr1:156841476 nonsynonymous SNV 0.994 1 23 hm5C_associated_SNPs_55294 0 0 0 0 2 NTRK1 chr1:156841547 5'GT 156841547 Upstream 72bp
chr3 52815993 52815993 1 + A T MESO 52815989 + 52815969 52816009 41 TCCGTCCCACCGTGAGCCAGCAGCAGTCCTGCCCCACATGC TCCGTCCCACCGTGAGCCAGCAGCTGTCCTGCCCCACATGC < 41bp 0.79556947987022 0.488594893969754 0.2795697 0.266456 prediction 0.59113895974044 Functional Loss - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52815989 chr3:52815993 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_55295 0 0 0 0 1 ITIH1 chr3:52816081 5'GT 52816081 Upstream 89bp
chr14 24631533 24631533 1 + G T LUAD 24631530 + 24631510 24631550 41 GACCAGGATGCTGCCTTCTTCAAGGTGAAAGGGCCTGGAAA GACCAGGATGCTGCCTTCTTCAATGTGAAAGGGCCTGGAAA < 41bp 0.795541945875585 0.411387555028658 0.9007684 0.39481914 prediction 0.591083891751171 Functional Loss - IRF9 ENSG00000213928 CDS Human protein_coding chr14:24631530 chr14:24631533 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_55296 0 0 1 0 1 IRF9 chr14:24631533 5'GT 24631533 Upstream 1bp
chr1 161697077 161697077 1 + A T rs139404539 161697073 + 161697053 161697093 41 GGCCTCCACCACCGCCCCAGCTCCATGGGCCGCAGCCTTGG GGCCTCCACCACCGCCCCAGCTCCTTGGGCCGCAGCCTTGG < 41bp 0.795519955207158 0.470083582076257 0.9436904 0.33393228 prediction 0.591039910414316 Functional Loss - FCRLB ENSG00000162746 CDS Human protein_coding chr1:161697073 chr1:161697077 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_55300 0 0 0 0 1 FCRLB chr1:161697037 3'AG 161697037 Downstream 41bp
chr1 150484844 150484844 1 + A T rs151102225 150484840 + 150484820 150484860 41 GTCCACAGTGGGAGGATACCCTTGACAAATACTGTGACCGG GTCCACAGTGGGAGGATACCCTTGTCAAATACTGTGACCGG < 41bp 0.811009958107437 0.515512597708325 0.08306217 0.07116136 prediction 0.590994720798223 Functional Loss - ECM1 ENSG00000143369 CDS Human protein_coding chr1:150484840 chr1:150484844 nonsynonymous SNV 0.101 5 25 hm5C_associated_SNPs_55301 1 0 0 0 1 ECM1 chr1:150484828 3'AG 150484828 Downstream 17bp
chr19 50209361 50209361 1 + G T COAD 50209359 + 50209339 50209379 41 GCAGCTCTGACAGCTGCTCCCAGGTAAGGGTCAGGGGTCAG GCAGCTCTGACAGCTGCTCCCATGTAAGGGTCAGGGGTCAG < 41bp 0.795488081757881 0.475313182015652 0.8454734 0.3420405 prediction 0.590976163515761 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50209359 chr19:50209361 nonsynonymous SNV 0.910 5 23 hm5C_associated_SNPs_55302 0 0 0 0 1 CPT1C chr19:50209361 5'GT 50209361 Upstream 1bp
chr9 96081396 96081396 1 - C A STAD 96081398 - 96081378 96081418 41 ATGTACAAGGAAGGGATTCACAGGCAAGGGGGACAGGTGAG ATGTACAAGGAAGGGATTCACATGCAAGGGGGACAGGTGAG < 41bp 0.848693751212169 0.553212704636499 0.3890062 0.17728138 prediction 0.590962093151341 Functional Loss - C9orf129 ENSG00000204352 CDS Human protein_coding chr9:96081398 chr9:96081396 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_55303 0 0 0 0 2 C9orf129 chr9:96081383 5'GT 96081383 Upstream 14bp
chr9 96081396 96081396 1 - C A STAD 96081398 - 96081378 96081418 41 ATGTACAAGGAAGGGATTCACAGGCAAGGGGGACAGGTGAG ATGTACAAGGAAGGGATTCACATGCAAGGGGGACAGGTGAG < 41bp 0.848693751212169 0.553212704636499 0.3890062 0.17728138 prediction 0.590962093151341 Functional Loss - C9orf129 ENSG00000204352 CDS Human protein_coding chr9:96081398 chr9:96081396 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_55303 0 0 0 0 2 C9orf129 chr9:96081456 3'AG 96081456 Downstream 61bp
chr12 107075814 107075814 1 + G T LUAD 107075812 + 107075792 107075832 41 CAGTTAACCACCAGAAGACTCGGGACCCGAGGACAGTCAAA CAGTTAACCACCAGAAGACTCGTGACCCGAGGACAGTCAAA < 41bp 0.795478365640707 0.472824263705695 0.9010843 0.13444766 prediction 0.590956731281414 Functional Loss - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107075812 chr12:107075814 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_55304 0 0 0 0 2 RFX4 chr12:107075771 3'AG 107075771 Downstream 44bp
chr12 107075814 107075814 1 + G T LUAD 107075812 + 107075792 107075832 41 CAGTTAACCACCAGAAGACTCGGGACCCGAGGACAGTCAAA CAGTTAACCACCAGAAGACTCGTGACCCGAGGACAGTCAAA < 41bp 0.795478365640707 0.472824263705695 0.9010843 0.13444766 prediction 0.590956731281414 Functional Loss - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107075812 chr12:107075814 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_55304 0 0 0 0 2 RFX4 chr12:107075832 5'GT 107075832 Upstream 19bp
chr19 5668193 5668193 1 + G T SARC 5668190 + 5668170 5668210 41 TAGGCGCGGCAGCTTTGCCCCAGGCGGGGCCTCCCGGGGCC TAGGCGCGGCAGCTTTGCCCCAGTCGGGGCCTCCCGGGGCC < 41bp 0.889548270403314 0.594082908686332 0.6081537 0.06429958 prediction 0.590930723433964 Functional Loss - SAFB ENSG00000160633 CDS Human protein_coding chr19:5668190 chr19:5668193 nonsynonymous SNV 0.327 1 24 hm5C_associated_SNPs_55305 0 0 1 0 1 SAFB chr19:5668173 3'AG 5668173 Downstream 21bp
chr1 110170834 110170834 1 + G T UCEC 110170831 + 110170811 110170851 41 AGGGCCGTGAACAGACGCTGCGGGAGGTCTTTGAGAGCATG AGGGCCGTGAACAGACGCTGCGGTAGGTCTTTGAGAGCATG < 41bp 0.795449436598288 0.419646632888957 0.4579087 0.109264344 prediction 0.590898873196576 Functional Loss - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110170831 chr1:110170834 stopgain 0.998 1 24 hm5C_associated_SNPs_55308 0 0 1 0 1 AMPD2 chr1:110170899 5'GT 110170899 Upstream 66bp
chr18 641356 641356 1 + G T UCEC 641354 + 641334 641374 41 TGATGTACCTGCTCTGCACACAGAATTAGACGAGGCGATCA TGATGTACCTGCTCTGCACACATAATTAGACGAGGCGATCA < 41bp 0.836192857291315 0.540749617309188 0.26584384 0.07917598 prediction 0.590886479964253 Functional Loss - CLUL1 ENSG00000079101 CDS Human protein_coding chr18:641354 chr18:641356 stopgain 0.271 1 23 hm5C_associated_SNPs_55309 0 0 0 0 1 CLUL1 chr18:641327 3'AG 641327 Downstream 30bp
chr10 18280128 18280128 1 + G T UCEC 18280125 + 18280105 18280145 41 CCCCAGAATTTGGGCATTTCCATGAAAGCAAAGGTCATATT CCCCAGAATTTGGGCATTTCCATTAAAGCAAAGGTCATATT < 41bp 0.795442452104466 0.430081469632362 0.17981854 0.0777266 prediction 0.590884904208932 Functional Loss - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18280125 chr10:18280128 stopgain 0.985 0 24 hm5C_associated_SNPs_55310 0 0 0 0 1 SLC39A12 chr10:18280080 3'AG 18280080 Downstream 49bp
chr5 10262689 10262689 1 + G T BLCA 10262687 + 10262667 10262707 41 GGTGTATGGAGGAGGGGCTGCTGAGATATCCTGTGCCCTGG GGTGTATGGAGGAGGGGCTGCTTAGATATCCTGTGCCCTGG < 41bp 0.84426610385306 0.548827724964008 0.83227354 0.32760936 prediction 0.590876757778103 Functional Loss - CCT5 ENSG00000150753 CDS Human protein_coding chr5:10262687 chr5:10262689 stopgain 0.958 1 23 hm5C_associated_SNPs_55311 0 0 1 0 2 CCT5 chr5:10262593 3'AG 10262593 Downstream 97bp
chr5 10262689 10262689 1 + G T BLCA 10262687 + 10262667 10262707 41 GGTGTATGGAGGAGGGGCTGCTGAGATATCCTGTGCCCTGG GGTGTATGGAGGAGGGGCTGCTTAGATATCCTGTGCCCTGG < 41bp 0.84426610385306 0.548827724964008 0.83227354 0.32760936 prediction 0.590876757778103 Functional Loss - CCT5 ENSG00000150753 CDS Human protein_coding chr5:10262687 chr5:10262689 stopgain 0.958 1 23 hm5C_associated_SNPs_55311 0 0 1 0 2 CCT5 chr5:10262730 5'GT 10262730 Upstream 42bp
chr10 135123393 135123393 1 + G C UCEC 135123392 + 135123372 135123412 41 ATGTTTGCTCCTTTTGCAAGCGGGCCTTCCCTTCCGGACAC ATGTTTGCTCCTTTTGCAAGCCGGCCTTCCCTTCCGGACAC < 41bp 0.81012323005817 0.514686997026493 0.72590137 0.35606253 prediction 0.590872466063353 Functional Loss - ZNF511 ENSG00000198546 CDS Human protein_coding chr10:135123392 chr10:135123393 nonsynonymous SNV 0.542 5 22 hm5C_associated_SNPs_55312 0 0 1 0 1 ZNF511 chr10:135123481 5'GT 135123481 Upstream 89bp
chr3 135980858 135980858 1 + G T SARC 135980855 + 135980835 135980875 41 GCTGAATGACTCTGGGGGAGCACGGATCCAAGAAGGAGTGG GCTGAATGACTCTGGGGGAGCACTGATCCAAGAAGGAGTGG < 41bp 0.795422637043318 0.414752461000911 0.59672004 0.5303035 prediction 0.590845274086635 Functional Loss - PCCB ENSG00000114054 CDS Human protein_coding chr3:135980855 chr3:135980858 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_55313 0 0 1 0 2 PCCB chr3:135980794 3'AG 135980794 Downstream 65bp
chr3 135980858 135980858 1 + G T SARC 135980855 + 135980835 135980875 41 GCTGAATGACTCTGGGGGAGCACGGATCCAAGAAGGAGTGG GCTGAATGACTCTGGGGGAGCACTGATCCAAGAAGGAGTGG < 41bp 0.795422637043318 0.414752461000911 0.59672004 0.5303035 prediction 0.590845274086635 Functional Loss - PCCB ENSG00000114054 CDS Human protein_coding chr3:135980855 chr3:135980858 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_55313 0 0 1 0 2 PCCB chr3:135980907 5'GT 135980907 Upstream 50bp
chr19 7593514 7593514 1 + G T LUAD 7593511 + 7593491 7593531 41 AGCTTCCGGCTCCTGTTTGACGTGGTGGTCATCCTCACCTG AGCTTCCGGCTCCTGTTTGACGTTGTGGTCATCCTCACCTG < 41bp 0.899179939290816 0.603770525415329 0.908695 0.17182663 prediction 0.590818827750974 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7593511 chr19:7593514 synonymous SNV . 0 24 hm5C_associated_SNPs_55314 0 0 0 0 2 MCOLN1 chr19:7593483 3'AG 7593483 Downstream 32bp
chr19 7593514 7593514 1 + G T LUAD 7593511 + 7593491 7593531 41 AGCTTCCGGCTCCTGTTTGACGTGGTGGTCATCCTCACCTG AGCTTCCGGCTCCTGTTTGACGTTGTGGTCATCCTCACCTG < 41bp 0.899179939290816 0.603770525415329 0.908695 0.17182663 prediction 0.590818827750974 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7593511 chr19:7593514 synonymous SNV . 0 24 hm5C_associated_SNPs_55314 0 0 0 0 2 MCOLN1 chr19:7593589 5'GT 7593589 Upstream 76bp
chr11 65721160 65721160 1 + G T BLCA 65721158 + 65721138 65721178 41 TGCCTGGCAGCCTACGCACCCAGAGGGAGCCGGGGCCCTGG TGCCTGGCAGCCTACGCACCCATAGGGAGCCGGGGCCCTGG < 41bp 0.861841160673361 0.566433103153422 0.87913346 0.044238776 prediction 0.590816115039877 Functional Loss - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65721158 chr11:65721160 unknown 0.025 0 23 hm5C_associated_SNPs_55315 0 0 0 0 1 TSGA10IP chr11:65721208 5'GT 65721208 Upstream 49bp
chr6 109763967 109763967 1 + G T UCEC 109763964 + 109763944 109763984 41 GGTTCCCCCAGCCACACATCCAAGAAGGCAGACGTGGTTCT GGTTCCCCCAGCCACACATCCAATAAGGCAGACGTGGTTCT < 41bp 0.795407070538902 0.40681768345446 0.30540437 0.059687257 prediction 0.590814141077804 Functional Loss - SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109763964 chr6:109763967 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_55316 0 0 0 0 1 SMPD2 chr6:109763955 3'AG 109763955 Downstream 13bp
chr3 187088669 187088669 1 + G T COAD 187088667 + 187088647 187088687 41 AGCACTGGACATCCCAGGGTCAGGTGCGTATGAGGCTCTTT AGCACTGGACATCCCAGGGTCATGTGCGTATGAGGCTCTTT < 41bp 0.795406279081939 0.45917618003448 0.92408985 0.7028798 prediction 0.590812558163878 Functional Loss - RTP4 ENSG00000136514 CDS Human protein_coding chr3:187088667 chr3:187088669 nonsynonymous SNV 0.204 0 23 hm5C_associated_SNPs_55317 0 0 0 0 1 RTP4 chr3:187088576 3'AG 187088576 Downstream 94bp
chr7 123509211 123509211 1 + A T SKCM 123509207 + 123509187 123509227 41 GGATCTCCACCATGACATCTCATGATTATGCTCTGCCTGTA GGATCTCCACCATGACATCTCATGTTTATGCTCTGCCTGTA < 41bp 0.795403271197418 0.493638402457478 0.16824013 0.06786871 prediction 0.590806542394835 Functional Loss - HYAL4 ENSG00000106302 CDS Human protein_coding chr7:123509207 chr7:123509211 nonsynonymous SNV 0.068 1 25 hm5C_associated_SNPs_55318 0 0 0 0 1 HYAL4 chr7:123509281 5'GT 123509281 Upstream 71bp
chr8 56270346 56270346 1 + G T HNSC 56270344 + 56270324 56270364 41 AGTATGCGGATGTGAGTATGCTGCATTTGCTAGCCACCTTT AGTATGCGGATGTGAGTATGCTTCATTTGCTAGCCACCTTT < 41bp 0.809748260169087 0.514349565237318 0.28677803 0.3479252 prediction 0.590797389863538 Functional Loss - XKR4 ENSG00000206579 CDS Human protein_coding chr8:56270344 chr8:56270346 synonymous SNV . 0 23 hm5C_associated_SNPs_55319 0 0 0 0 1 XKR4 chr8:56270437 5'GT 56270437 Upstream 92bp
chr12 4700406 4700406 1 + G T UCEC 4700404 + 4700384 4700424 41 TCCACCCTAGCATTAAAACCCAGGATCCCAAGGCAGAGGAG TCCACCCTAGCATTAAAACCCATGATCCCAAGGCAGAGGAG < 41bp 0.845666984010839 0.550275322166814 0.8329659 0.061216354 prediction 0.59078332368805 Functional Loss - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4700404 chr12:4700406 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_55321 0 0 0 0 2 DYRK4 chr12:4700326 3'AG 4700326 Downstream 81bp
chr12 4700406 4700406 1 + G T UCEC 4700404 + 4700384 4700424 41 TCCACCCTAGCATTAAAACCCAGGATCCCAAGGCAGAGGAG TCCACCCTAGCATTAAAACCCATGATCCCAAGGCAGAGGAG < 41bp 0.845666984010839 0.550275322166814 0.8329659 0.061216354 prediction 0.59078332368805 Functional Loss - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4700404 chr12:4700406 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_55321 0 0 0 0 2 DYRK4 chr12:4700464 5'GT 4700464 Upstream 59bp
chr18 29790549 29790549 1 + A C UCEC 29790545 + 29790525 29790565 41 GGAAAGTAGAACGCTGTACCCTAAAAGAGGATTTCAGTGCC GGAAAGTAGAACGCTGTACCCTAACAGAGGATTTCAGTGCC < 41bp 0.795385651922949 0.376732679205402 0.11247271 0.03061688 prediction 0.590771303845898 Functional Loss - MEP1B ENSG00000141434 CDS Human protein_coding chr18:29790545 chr18:29790549 nonsynonymous SNV 0.965 2 25 hm5C_associated_SNPs_55322 0 0 0 0 1 MEP1B chr18:29790464 3'AG 29790464 Downstream 86bp
chr1 161198087 161198087 1 + G T UCEC 161198084 + 161198064 161198104 41 GGGGGCCATCTTGACACTGGCTGGGAAGTACTCGGGTATGG GGGGGCCATCTTGACACTGGCTGTGAAGTACTCGGGTATGG < 41bp 0.795383168567351 0.416630273247368 0.4483619 0.16399968 prediction 0.590766337134703 Functional Loss - TOMM40L ENSG00000158882 CDS Human protein_coding chr1:161198084 chr1:161198087 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55323 0 0 1 0 1 TOMM40L chr1:161198098 5'GT 161198098 Upstream 12bp
chr2 187529902 187529902 1 + A C SARC 187529898 + 187529878 187529918 41 TTAAGACAGAAAACCAAACTCGCCAGGTGGTATGTGACCTT TTAAGACAGAAAACCAAACTCGCCCGGTGGTATGTGACCTT < 41bp 0.795375241229852 0.382638096792335 0.75667804 0.11926645 prediction 0.590750482459704 Functional Loss - ITGAV ENSG00000138448 CDS Human protein_coding chr2:187529898 chr2:187529902 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_55324 0 0 1 0 2 ITGAV chr2:187529853 3'AG 187529853 Downstream 50bp
chr2 187529902 187529902 1 + A C SARC 187529898 + 187529878 187529918 41 TTAAGACAGAAAACCAAACTCGCCAGGTGGTATGTGACCTT TTAAGACAGAAAACCAAACTCGCCCGGTGGTATGTGACCTT < 41bp 0.795375241229852 0.382638096792335 0.75667804 0.11926645 prediction 0.590750482459704 Functional Loss - ITGAV ENSG00000138448 CDS Human protein_coding chr2:187529898 chr2:187529902 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_55324 0 0 1 0 2 ITGAV chr2:187529945 5'GT 187529945 Upstream 44bp
chr8 17415880 17415880 1 + G T CHOL 17415878 + 17415858 17415898 41 GCACACTCATGGCCTACTCTCTGGTGGCAGCCTGTGTTCTC GCACACTCATGGCCTACTCTCTTGTGGCAGCCTGTGTTCTC < 41bp 0.847727719940743 0.552396308552153 0.526172 0.11961606 prediction 0.59066282277718 Functional Loss - SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17415878 chr8:17415880 synonymous SNV . 0 23 hm5C_associated_SNPs_55326 0 0 1 0 2 SLC7A2 chr8:17415804 3'AG 17415804 Downstream 77bp
chr8 17415880 17415880 1 + G T CHOL 17415878 + 17415858 17415898 41 GCACACTCATGGCCTACTCTCTGGTGGCAGCCTGTGTTCTC GCACACTCATGGCCTACTCTCTTGTGGCAGCCTGTGTTCTC < 41bp 0.847727719940743 0.552396308552153 0.526172 0.11961606 prediction 0.59066282277718 Functional Loss - SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17415878 chr8:17415880 synonymous SNV . 0 23 hm5C_associated_SNPs_55326 0 0 1 0 2 SLC7A2 chr8:17415906 5'GT 17415906 Upstream 27bp
chr5 140022623 140022623 1 + G T SARC 140022621 + 140022601 140022641 41 TGGTGCCTTCATTACATCATCTGCAGGTAACAGGGCAATTG TGGTGCCTTCATTACATCATCTTCAGGTAACAGGGCAATTG < 41bp 0.795325520363411 0.485096237976075 0.24705824 0.18640545 prediction 0.590651040726821 Functional Loss - TMCO6 ENSG00000113119 CDS Human protein_coding chr5:140022621 chr5:140022623 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_55327 0 0 1 0 1 TMCO6 chr5:140022626 5'GT 140022626 Upstream 4bp
chr16 66885423 66885423 1 + G T COAD 66885421 + 66885401 66885441 41 CACTTTTGGGGAGGCGGCCTCAGCACCTGATGGCCTGGCTG CACTTTTGGGGAGGCGGCCTCATCACCTGATGGCCTGGCTG < 41bp 0.79532221505126 0.461745324281184 0.9024423 0.3925022 prediction 0.59064443010252 Functional Loss - CA7 ENSG00000168748 CDS Human protein_coding chr16:66885421 chr16:66885423 nonsynonymous SNV 0.017 1 23 hm5C_associated_SNPs_55328 0 0 0 0 2 CA7 chr16:66885366 3'AG 66885366 Downstream 58bp
chr16 66885423 66885423 1 + G T COAD 66885421 + 66885401 66885441 41 CACTTTTGGGGAGGCGGCCTCAGCACCTGATGGCCTGGCTG CACTTTTGGGGAGGCGGCCTCATCACCTGATGGCCTGGCTG < 41bp 0.79532221505126 0.461745324281184 0.9024423 0.3925022 prediction 0.59064443010252 Functional Loss - CA7 ENSG00000168748 CDS Human protein_coding chr16:66885421 chr16:66885423 nonsynonymous SNV 0.017 1 23 hm5C_associated_SNPs_55328 0 0 0 0 2 CA7 chr16:66885461 5'GT 66885461 Upstream 39bp
chr1 180885304 180885304 1 + G T LUAD 180885301 + 180885281 180885321 41 CTCCTCCAGAGGGCCCAAGACAGGGAGTGGAACAGCCAGCC CTCCTCCAGAGGGCCCAAGACAGTGAGTGGAACAGCCAGCC < 41bp 0.795319409628811 0.41653154434118 0.8477143 0.2774892 prediction 0.590638819257623 Functional Loss - KIAA1614 ENSG00000135835 CDS Human protein_coding chr1:180885301 chr1:180885304 nonsynonymous SNV 0.061 1 24 hm5C_associated_SNPs_55329 0 0 0 0 1 KIAA1614 chr1:180885290 3'AG 180885290 Downstream 15bp
chr9 37428496 37428496 1 + G T BLCA 37428493 + 37428473 37428513 41 CCCCTCAGTGGTGGCTGGACCTCGTGGAAGCCCCTCTGGCT CCCCTCAGTGGTGGCTGGACCTCTTGGAAGCCCCTCTGGCT < 41bp 0.79530649318115 0.416362440280514 0.47078228 0.13993272 prediction 0.5906129863623 Functional Loss - GRHPR ENSG00000137106 CDS Human protein_coding chr9:37428493 chr9:37428496 synonymous SNV . 0 24 hm5C_associated_SNPs_55332 0 0 1 0 2 GRHPR chr9:37428481 3'AG 37428481 Downstream 16bp
chr9 37428496 37428496 1 + G T BLCA 37428493 + 37428473 37428513 41 CCCCTCAGTGGTGGCTGGACCTCGTGGAAGCCCCTCTGGCT CCCCTCAGTGGTGGCTGGACCTCTTGGAAGCCCCTCTGGCT < 41bp 0.79530649318115 0.416362440280514 0.47078228 0.13993272 prediction 0.5906129863623 Functional Loss - GRHPR ENSG00000137106 CDS Human protein_coding chr9:37428493 chr9:37428496 synonymous SNV . 0 24 hm5C_associated_SNPs_55332 0 0 1 0 2 GRHPR chr9:37428569 5'GT 37428569 Upstream 74bp
chr20 25199194 25199194 1 + G T LUAD 25199192 + 25199172 25199212 41 TGTCATTCCCACAGCTACCTCGGGCTCGGGCTGATGTCGGC TGTCATTCCCACAGCTACCTCGTGCTCGGGCTGATGTCGGC < 41bp 0.818335189825524 0.523040731354543 0.9011934 0.11700648 prediction 0.590588916941962 Functional Loss - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25199192 chr20:25199194 nonsynonymous SNV 0.890 4 23 hm5C_associated_SNPs_55333 0 0 1 0 2 ENTPD6 chr20:25199186 3'AG 25199186 Downstream 9bp
chr20 25199194 25199194 1 + G T LUAD 25199192 + 25199172 25199212 41 TGTCATTCCCACAGCTACCTCGGGCTCGGGCTGATGTCGGC TGTCATTCCCACAGCTACCTCGTGCTCGGGCTGATGTCGGC < 41bp 0.818335189825524 0.523040731354543 0.9011934 0.11700648 prediction 0.590588916941962 Functional Loss - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25199192 chr20:25199194 nonsynonymous SNV 0.890 4 23 hm5C_associated_SNPs_55333 0 0 1 0 2 ENTPD6 chr20:25199250 5'GT 25199250 Upstream 57bp
chr16 20441082 20441082 1 + A T LUAD 20441078 + 20441058 20441098 41 GTGAGGGAGAAGTGGAAACACCAGACTGGTGTGGAGCTGTA GTGAGGGAGAAGTGGAAACACCAGTCTGGTGTGGAGCTGTA < 41bp 0.814765622793045 0.519478187166724 0.63558507 0.5623347 prediction 0.590574871252642 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20441078 chr16:20441082 nonsynonymous SNV 0.008 1 25 hm5C_associated_SNPs_55335 0 0 0 0 2 ACSM5 chr16:20441000 3'AG 20441000 Downstream 83bp
chr16 20441082 20441082 1 + A T LUAD 20441078 + 20441058 20441098 41 GTGAGGGAGAAGTGGAAACACCAGACTGGTGTGGAGCTGTA GTGAGGGAGAAGTGGAAACACCAGTCTGGTGTGGAGCTGTA < 41bp 0.814765622793045 0.519478187166724 0.63558507 0.5623347 prediction 0.590574871252642 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20441078 chr16:20441082 nonsynonymous SNV 0.008 1 25 hm5C_associated_SNPs_55335 0 0 0 0 2 ACSM5 chr16:20441123 5'GT 20441123 Upstream 42bp
chr10 89717678 89717678 1 + G T LUSC 89717675 + 89717655 89717695 41 CCAATTCAGGACCCACACGACGGGAAGACAAGTTCATGTAC CCAATTCAGGACCCACACGACGGTAAGACAAGTTCATGTAC < 41bp 0.87576253393169 0.580503896558011 0.43352318 0.24954271 prediction 0.590517274747357 Functional Loss - PTEN ENSG00000171862 CDS Human protein_coding chr10:89717675 chr10:89717678 stopgain 0.999 1 24 hm5C_associated_SNPs_55339 0 0 1 0 2 PTEN chr10:89717610 3'AG 89717610 Downstream 69bp
chr10 89717678 89717678 1 + G T LUSC 89717675 + 89717655 89717695 41 CCAATTCAGGACCCACACGACGGGAAGACAAGTTCATGTAC CCAATTCAGGACCCACACGACGGTAAGACAAGTTCATGTAC < 41bp 0.87576253393169 0.580503896558011 0.43352318 0.24954271 prediction 0.590517274747357 Functional Loss - PTEN ENSG00000171862 CDS Human protein_coding chr10:89717675 chr10:89717678 stopgain 0.999 1 24 hm5C_associated_SNPs_55339 0 0 1 0 2 PTEN chr10:89717776 5'GT 89717776 Upstream 99bp
chr2 120388454 120388454 1 + G T KIRC 120388451 + 120388431 120388471 41 CTGAGGCCTTAGCCATGTCTCTAGATTATGATCCTCTGTAT CTGAGGCCTTAGCCATGTCTCTATATTATGATCCTCTGTAT < 41bp 0.875005299226029 0.579768075444403 0.0900816 0.049447477 prediction 0.59047444756325 Functional Loss - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120388451 chr2:120388454 nonsynonymous SNV 0.311 2 24 hm5C_associated_SNPs_55344 0 0 0 0 1 CFAP221 chr2:120388477 5'GT 120388477 Upstream 24bp
chr13 25171621 25171621 1 + G T UCEC 25171618 + 25171598 25171638 41 GCCGTGGAGATACTTTTTGGCGAGAAATGACTTCCAATGAC GCCGTGGAGATACTTTTTGGCGATAAATGACTTCCAATGAC < 41bp 0.795230903132738 0.449788581877601 0.45717695 0.09818876 prediction 0.590461806265477 Functional Loss - TPTE2P6 ENSG00000205822;ENSG00000243008 ncRNA_exonic Human other chr13:25171618 chr13:25171621 . . 0 24 hm5C_associated_SNPs_55346 0 0 1 0 1 TPTE2P6 chr13:25171525 3'AG 25171525 Downstream 97bp
chr22 50962782 50962782 1 - C A rs140523 50962785 - 50962765 50962805 41 CAGGCTCTCTCAGCTCAAGCCTCGGGTCCTCCCTGGGACCC CAGGCTCTCTCAGCTCAAGCCTCTGGTCCTCCCTGGGACCC < 41bp 0.877676712171271 0.582448560085144 0.41890743 0.14782089 prediction 0.590456304172255 Functional Loss - SCO2 ENSG00000130489 CDS Human antisense chr22:50962785 chr22:50962782 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_55347 0 0 0 0 1 SCO2;NCAPH2 chr22:50962853 3'AG 50962853 Downstream 72bp
chr20 60701439 60701439 1 + G T PCPG 60701437 + 60701417 60701457 41 TTCCGAGGGATGGCGCCCTACGGCCCGCTGGCGGCCAGCTC TTCCGAGGGATGGCGCCCTACGTCCCGCTGGCGGCCAGCTC < 41bp 0.795227791582592 0.461154641463703 0.37717006 0.26287755 prediction 0.590455583165185 Functional Loss - LSM14B ENSG00000149657 CDS Human protein_coding chr20:60701437 chr20:60701439 nonsynonymous SNV 0.919 2 23 hm5C_associated_SNPs_55348 0 0 1 0 2 LSM14B chr20:60701360 3'AG 60701360 Downstream 80bp
chr20 60701439 60701439 1 + G T PCPG 60701437 + 60701417 60701457 41 TTCCGAGGGATGGCGCCCTACGGCCCGCTGGCGGCCAGCTC TTCCGAGGGATGGCGCCCTACGTCCCGCTGGCGGCCAGCTC < 41bp 0.795227791582592 0.461154641463703 0.37717006 0.26287755 prediction 0.590455583165185 Functional Loss - LSM14B ENSG00000149657 CDS Human protein_coding chr20:60701437 chr20:60701439 nonsynonymous SNV 0.919 2 23 hm5C_associated_SNPs_55348 0 0 1 0 2 LSM14B chr20:60701495 5'GT 60701495 Upstream 57bp
chr2 1499813 1499813 1 + G T LUAD 1499810 + 1499790 1499830 41 CGGATGCACAGAGGCGTGAGCTGGAGAAGCACTCCCTGTCT CGGATGCACAGAGGCGTGAGCTGTAGAAGCACTCCCTGTCT < 41bp 0.888959913857678 0.593739939418928 0.8893636 0.78383994 prediction 0.5904399488775 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1499810 chr2:1499813 stopgain 0.022 0 24 hm5C_associated_SNPs_55351 0 0 0 0 1 TPO chr2:1499761 3'AG 1499761 Downstream 53bp
chr9 104316311 104316311 1 + A T LUSC 104316307 + 104316287 104316327 41 AAAAGGAGATGAAACTATTGCTGGATATGTACCGTTCTGCC AAAAGGAGATGAAACTATTGCTGGTTATGTACCGTTCTGCC < 41bp 0.836097762823781 0.540886758119922 0.7472263 0.24298525 prediction 0.590422009407717 Functional Loss - RNF20 ENSG00000155827 CDS Human protein_coding chr9:104316307 chr9:104316311 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_55353 0 0 1 0 2 RNF20 chr9:104316270 3'AG 104316270 Downstream 42bp
chr9 104316311 104316311 1 + A T LUSC 104316307 + 104316287 104316327 41 AAAAGGAGATGAAACTATTGCTGGATATGTACCGTTCTGCC AAAAGGAGATGAAACTATTGCTGGTTATGTACCGTTCTGCC < 41bp 0.836097762823781 0.540886758119922 0.7472263 0.24298525 prediction 0.590422009407717 Functional Loss - RNF20 ENSG00000155827 CDS Human protein_coding chr9:104316307 chr9:104316311 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_55353 0 0 1 0 2 RNF20 chr9:104316387 5'GT 104316387 Upstream 77bp
chr3 111831962 111831962 1 + G T UCEC 111831959 + 111831939 111831979 41 ATATACCTGGTTGTGAGAGTCTGGGGCTTGATCCAACATCC ATATACCTGGTTGTGAGAGTCTGTGGCTTGATCCAACATCC < 41bp 0.795210483243406 0.423421668479607 0.8969027 0.106047004 prediction 0.590420966486812 Functional Loss - C3orf52 ENSG00000114529 CDS Human protein_coding chr3:111831959 chr3:111831962 nonsynonymous SNV 0.529 3 24 hm5C_associated_SNPs_55354 0 0 1 0 1 C3orf52 chr3:111831992 5'GT 111831992 Upstream 31bp
chr1 46976691 46976691 1 + G T LUAD 46976689 + 46976669 46976709 41 GCTCCAGAAGCAGAAGGAGGCTGAGGGCTCCCATGGGGAAG GCTCCAGAAGCAGAAGGAGGCTTAGGGCTCCCATGGGGAAG < 41bp 0.795201921503401 0.452404772864208 0.7305882 0.549692 prediction 0.590403843006803 Functional Loss - DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46976689 chr1:46976691 stopgain 1.000 0 23 hm5C_associated_SNPs_55355 0 0 0 0 1 DMBX1 chr1:46976607 3'AG 46976607 Downstream 85bp
chr11 55653315 55653315 1 + G T LUAD 55653313 + 55653293 55653333 41 AGTGGGCTGCTGAGGAACGCCGGGTAAGTGATGCCTCTGAA AGTGGGCTGCTGAGGAACGCCGTGTAAGTGATGCCTCTGAA < 41bp 0.829121627440469 0.533920006658128 0.5495525 0.17990401 prediction 0.590403241564681 Functional Loss - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55653313 chr11:55653315 synonymous SNV . 0 23 hm5C_associated_SNPs_55356 0 0 0 0 1 TRIM51 chr11:55653315 5'GT 55653315 Upstream 1bp
chr12 133768135 133768135 1 + G T UCEC 133768132 + 133768112 133768152 41 CCTGGGAGGAGTGGCAGCTGCTAGACCCAGCACAGAAGTGC CCTGGGAGGAGTGGCAGCTGCTATACCCAGCACAGAAGTGC < 41bp 0.795196679533348 0.445542792424716 0.33488616 0.4187792 prediction 0.590393359066696 Functional Loss - ZNF268 ENSG00000090612;ENSG00000256825 CDS Human other chr12:133768132 chr12:133768135 nonsynonymous SNV 0.989 3 24 hm5C_associated_SNPs_55357 0 0 0 0 3 ZNF268 chr12:133768075 3'AG 133768075 Downstream 61bp
chr12 133768135 133768135 1 + G T UCEC 133768132 + 133768112 133768152 41 CCTGGGAGGAGTGGCAGCTGCTAGACCCAGCACAGAAGTGC CCTGGGAGGAGTGGCAGCTGCTATACCCAGCACAGAAGTGC < 41bp 0.795196679533348 0.445542792424716 0.33488616 0.4187792 prediction 0.590393359066696 Functional Loss - ZNF268 ENSG00000090612;ENSG00000256825 CDS Human other chr12:133768132 chr12:133768135 nonsynonymous SNV 0.989 3 24 hm5C_associated_SNPs_55357 0 0 0 0 3 ZNF268 chr12:133768120 3'AG 133768120 Downstream 16bp
chr12 133768135 133768135 1 + G T UCEC 133768132 + 133768112 133768152 41 CCTGGGAGGAGTGGCAGCTGCTAGACCCAGCACAGAAGTGC CCTGGGAGGAGTGGCAGCTGCTATACCCAGCACAGAAGTGC < 41bp 0.795196679533348 0.445542792424716 0.33488616 0.4187792 prediction 0.590393359066696 Functional Loss - ZNF268 ENSG00000090612;ENSG00000256825 CDS Human other chr12:133768132 chr12:133768135 nonsynonymous SNV 0.989 3 24 hm5C_associated_SNPs_55357 0 0 0 0 3 ZNF268 chr12:133768201 5'GT 133768201 Upstream 67bp
chr9 139317621 139317621 1 + G T UCEC 139317618 + 139317598 139317638 41 GGAAGCCGGCAGTGGCCGCCCTGGGTGACCTGACTGACCTG GGAAGCCGGCAGTGGCCGCCCTGTGTGACCTGACTGACCTG < 41bp 0.883062265852883 0.587887512024846 0.87648153 0.23408064 prediction 0.590349507656073 Functional Loss - PMPCA ENSG00000165688 CDS Human protein_coding chr9:139317618 chr9:139317621 nonsynonymous SNV 0.538 5 24 hm5C_associated_SNPs_55359 0 0 1 0 1 PMPCA chr9:139317547 3'AG 139317547 Downstream 75bp
chr14 76549820 76549820 1 + G T BLCA 76549818 + 76549798 76549838 41 CAGGATGATGTCGGCTGGGACTGGGACCATCTGTTCACTGA CAGGATGATGTCGGCTGGGACTTGGACCATCTGTTCACTGA < 41bp 0.839084656042268 0.543910420866901 0.2914833 0.08954498 prediction 0.590348470350734 Functional Loss - IFT43 ENSG00000119650 CDS Human protein_coding chr14:76549818 chr14:76549820 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_55360 0 0 1 1 1 IFT43 chr14:76549801 3'AG 76549801 Downstream 20bp
chr2 219114591 219114591 1 + G T UCEC 219114588 + 219114568 219114608 41 GCGAAAACGTCTGACTTCCTCAAGGTGCTGAACCGCGCACG GCGAAAACGTCTGACTTCCTCAATGTGCTGAACCGCGCACG < 41bp 0.893274107931932 0.598112171867551 0.92615557 0.61702794 prediction 0.590323872128762 Functional Loss - ARPC2 ENSG00000163466 CDS Human protein_coding chr2:219114588 chr2:219114591 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_55361 0 0 1 0 2 ARPC2 chr2:219114544 3'AG 219114544 Downstream 48bp
chr2 219114591 219114591 1 + G T UCEC 219114588 + 219114568 219114608 41 GCGAAAACGTCTGACTTCCTCAAGGTGCTGAACCGCGCACG GCGAAAACGTCTGACTTCCTCAATGTGCTGAACCGCGCACG < 41bp 0.893274107931932 0.598112171867551 0.92615557 0.61702794 prediction 0.590323872128762 Functional Loss - ARPC2 ENSG00000163466 CDS Human protein_coding chr2:219114588 chr2:219114591 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_55361 0 0 1 0 2 ARPC2 chr2:219114644 5'GT 219114644 Upstream 54bp
chr15 80464585 80464585 1 + G T THYM 80464583 + 80464563 80464603 41 GGAATGGTCCTTATGAACGACTGGAGTGGTAATTACTGGAG GGAATGGTCCTTATGAACGACTTGAGTGGTAATTACTGGAG < 41bp 0.820741799926312 0.525584177245682 0.5728517 0.24460357 prediction 0.59031524536126 Functional Loss - FAH ENSG00000103876 CDS Human protein_coding chr15:80464583 chr15:80464585 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_55362 0 0 0 0 2 FAH chr15:80464491 3'AG 80464491 Downstream 95bp
chr15 80464585 80464585 1 + G T THYM 80464583 + 80464563 80464603 41 GGAATGGTCCTTATGAACGACTGGAGTGGTAATTACTGGAG GGAATGGTCCTTATGAACGACTTGAGTGGTAATTACTGGAG < 41bp 0.820741799926312 0.525584177245682 0.5728517 0.24460357 prediction 0.59031524536126 Functional Loss - FAH ENSG00000103876 CDS Human protein_coding chr15:80464583 chr15:80464585 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_55362 0 0 0 0 2 FAH chr15:80464590 5'GT 80464590 Upstream 6bp
chr19 55855145 55855145 1 + A T ESCA 55855141 + 55855121 55855161 41 AGGGCCGGTGAGAATGACTTCAGCATCATGTACTCAACCCG AGGGCCGGTGAGAATGACTTCAGCTTCATGTACTCAACCCG < 41bp 0.820590880041769 0.52545008994724 0.3040735 0.33941162 prediction 0.590281580189057 Functional Loss - KMT5C ENSG00000133247 CDS Human protein_coding chr19:55855141 chr19:55855145 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_55365 0 0 1 0 2 KMT5C chr19:55855048 3'AG 55855048 Downstream 98bp
chr19 55855145 55855145 1 + A T ESCA 55855141 + 55855121 55855161 41 AGGGCCGGTGAGAATGACTTCAGCATCATGTACTCAACCCG AGGGCCGGTGAGAATGACTTCAGCTTCATGTACTCAACCCG < 41bp 0.820590880041769 0.52545008994724 0.3040735 0.33941162 prediction 0.590281580189057 Functional Loss - KMT5C ENSG00000133247 CDS Human protein_coding chr19:55855141 chr19:55855145 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_55365 0 0 1 0 2 KMT5C chr19:55855211 5'GT 55855211 Upstream 67bp
chr3 50085713 50085713 1 + G T LUAD 50085711 + 50085691 50085731 41 TCCAGGACAAAGAAGTTACCCTGGAGTATGTATCAAGCCTG TCCAGGACAAAGAAGTTACCCTTGAGTATGTATCAAGCCTG < 41bp 0.795134478589205 0.490573138143203 0.26782647 0.03985405 prediction 0.59026895717841 Functional Loss - RBM6 ENSG00000004534 CDS Human protein_coding chr3:50085711 chr3:50085713 stopgain . 0 23 hm5C_associated_SNPs_55366 0 0 1 0 2 RBM6 chr3:50085678 3'AG 50085678 Downstream 36bp
chr3 50085713 50085713 1 + G T LUAD 50085711 + 50085691 50085731 41 TCCAGGACAAAGAAGTTACCCTGGAGTATGTATCAAGCCTG TCCAGGACAAAGAAGTTACCCTTGAGTATGTATCAAGCCTG < 41bp 0.795134478589205 0.490573138143203 0.26782647 0.03985405 prediction 0.59026895717841 Functional Loss - RBM6 ENSG00000004534 CDS Human protein_coding chr3:50085711 chr3:50085713 stopgain . 0 23 hm5C_associated_SNPs_55366 0 0 1 0 2 RBM6 chr3:50085752 5'GT 50085752 Upstream 40bp
chr3 100170629 100170629 1 + G T UCEC 100170626 + 100170606 100170646 41 GAAGGCATTCTCATGAGGACCAAGAATTTCGATGCCGTAGC GAAGGCATTCTCATGAGGACCAATAATTTCGATGCCGTAGC < 41bp 0.79513255758775 0.416176873607414 0.08009541 0.03284949 prediction 0.5902651151755 Functional Loss - LNP1 ENSG00000206535 CDS Human protein_coding chr3:100170626 chr3:100170629 stopgain 0.792 0 24 hm5C_associated_SNPs_55367 0 0 0 2 1 LNP1 chr3:100170563 3'AG 100170563 Downstream 67bp
chrX 49846406 49846406 1 + G T THCA 49846403 + 49846383 49846423 41 CAGTGTCGTCTGGCTTGAGCCTGGGCAAAGAGGGCCCTCTA CAGTGTCGTCTGGCTTGAGCCTGTGCAAAGAGGGCCCTCTA < 41bp 0.79512623065163 0.423224191392503 0.41057807 0.07405296 prediction 0.59025246130326 Functional Loss - CLCN5 ENSG00000171365 CDS Human protein_coding chrX:49846403 chrX:49846406 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_55368 0 0 0 0 1 CLCN5 chrX:49846504 5'GT 49846504 Upstream 99bp
chr1 897850 897850 1 + G C LUAD 897849 + 897829 897869 41 CCCGCAGGCAGCATGTCCCACGGGTGAGGCGCGGCCGCGGG CCCGCAGGCAGCATGTCCCACCGGTGAGGCGCGGCCGCGGG < 41bp 0.798370207317915 0.503258490851627 0.90114266 0.25175494 prediction 0.590223432932577 Functional Loss - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:897849 chr1:897850 nonsynonymous SNV 0.890 2 22 hm5C_associated_SNPs_55369 0 0 1 0 1 KLHL17 chr1:897851 5'GT 897851 Upstream 2bp
chr6 37441358 37441358 1 + A C COAD 37441354 + 37441334 37441374 41 GCATGGTATCTGGCAGTGAGCAGAAGTTCCTCATCGGCCTG GCATGGTATCTGGCAGTGAGCAGACGTTCCTCATCGGCCTG < 41bp 0.795110166676953 0.469536782412716 0.8837758 0.8671869 prediction 0.590220333353906 Functional Loss - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37441354 chr6:37441358 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_55370 0 0 1 0 1 CMTR1 chr6:37441377 5'GT 37441377 Upstream 20bp
chr6 43411980 43411980 1 + G T LUAD 43411977 + 43411957 43411997 41 GCACATCTGGTCGCCTGCTGCAGGAAGAAAGCAAGAAGGAG GCACATCTGGTCGCCTGCTGCAGTAAGAAAGCAAGAAGGAG < 41bp 0.79510714840947 0.406263563789951 0.88466084 0.7649096 prediction 0.590214296818939 Functional Loss - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43411977 chr6:43411980 stopgain 0.994 0 24 hm5C_associated_SNPs_55371 0 0 1 0 1 ABCC10 chr6:43411897 3'AG 43411897 Downstream 84bp
chr9 138556117 138556117 1 + G T LUSC 138556115 + 138556095 138556135 41 AATATTGAACACTTGAAGAACGGCAGCCTAATATTTGATTT AATATTGAACACTTGAAGAACGTCAGCCTAATATTTGATTT < 41bp 0.817316591223394 0.522210896256926 0.051808774 0.15328428 prediction 0.590211389932935 Functional Loss - LCN9 ENSG00000148386 CDS Human protein_coding chr9:138556115 chr9:138556117 nonsynonymous SNV 0.316 2 23 hm5C_associated_SNPs_55372 0 0 0 0 1 LCN9 chr9:138556144 5'GT 138556144 Upstream 28bp
chr2 66667049 66667049 1 + G T ACC 66667046 + 66667026 66667066 41 TACTTGTACCCCCCGCGAGCCGGGGGTGGCGGGCGGGGACG TACTTGTACCCCCCGCGAGCCGGTGGTGGCGGGCGGGGACG < 41bp 0.888115325865999 0.593025133130796 0.93076336 0.91157293 prediction 0.590180385470407 Functional Loss - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66667046 chr2:66667049 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55373 0 0 0 0 2 MEIS1 chr2:66666975 3'AG 66666975 Downstream 75bp
chr2 66667049 66667049 1 + G T ACC 66667046 + 66667026 66667066 41 TACTTGTACCCCCCGCGAGCCGGGGGTGGCGGGCGGGGACG TACTTGTACCCCCCGCGAGCCGGTGGTGGCGGGCGGGGACG < 41bp 0.888115325865999 0.593025133130796 0.93076336 0.91157293 prediction 0.590180385470407 Functional Loss - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66667046 chr2:66667049 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55373 0 0 0 0 2 MEIS1 chr2:66667116 5'GT 66667116 Upstream 68bp
chr11 119149302 119149302 1 + G T BLCA 119149299 + 119149279 119149319 41 CGTGGTAGATCCGTTTGATCCTAGAGGGAGTGGCAGCCTGT CGTGGTAGATCCGTTTGATCCTATAGGGAGTGGCAGCCTGT < 41bp 0.795087989040585 0.430295895496668 0.40409458 0.41781092 prediction 0.59017597808117 Functional Loss - CBL ENSG00000110395 CDS Human protein_coding chr11:119149299 chr11:119149302 nonsynonymous SNV 0.975 2 24 hm5C_associated_SNPs_55374 0 0 1 0 1 CBL chr11:119149220 3'AG 119149220 Downstream 83bp
chr10 22678165 22678165 1 + G T LUAD 22678162 + 22678142 22678182 41 TGGGTCCTGCAAAGGGAACACACGGCTGCCTGGCATCATGA TGGGTCCTGCAAAGGGAACACACTGCTGCCTGGCATCATGA < 41bp 0.795087004890733 0.406387224510612 0.17199191 0.05792159 prediction 0.590174009781466 Functional Loss - SPAG6 ENSG00000077327 CDS Human protein_coding chr10:22678162 chr10:22678165 nonsynonymous SNV 0.954 2 24 hm5C_associated_SNPs_55375 0 0 0 0 2 SPAG6 chr10:22678089 3'AG 22678089 Downstream 77bp
chr10 22678165 22678165 1 + G T LUAD 22678162 + 22678142 22678182 41 TGGGTCCTGCAAAGGGAACACACGGCTGCCTGGCATCATGA TGGGTCCTGCAAAGGGAACACACTGCTGCCTGGCATCATGA < 41bp 0.795087004890733 0.406387224510612 0.17199191 0.05792159 prediction 0.590174009781466 Functional Loss - SPAG6 ENSG00000077327 CDS Human protein_coding chr10:22678162 chr10:22678165 nonsynonymous SNV 0.954 2 24 hm5C_associated_SNPs_55375 0 0 0 0 2 SPAG6 chr10:22678241 5'GT 22678241 Upstream 77bp
chr7 43540867 43540867 1 + G T THYM 43540865 + 43540845 43540885 41 CCTGCAGGCTGCCTTCCACCCTGGGTATAGCTTCTCTCCCC CCTGCAGGCTGCCTTCCACCCTTGGTATAGCTTCTCTCCCC < 41bp 0.795077261999548 0.48512097522507 0.8672659 0.103744745 prediction 0.590154523999097 Functional Loss - HECW1 ENSG00000002746 CDS Human protein_coding chr7:43540865 chr7:43540867 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_55376 0 0 0 0 2 HECW1 chr7:43540812 3'AG 43540812 Downstream 56bp
chr7 43540867 43540867 1 + G T THYM 43540865 + 43540845 43540885 41 CCTGCAGGCTGCCTTCCACCCTGGGTATAGCTTCTCTCCCC CCTGCAGGCTGCCTTCCACCCTTGGTATAGCTTCTCTCCCC < 41bp 0.795077261999548 0.48512097522507 0.8672659 0.103744745 prediction 0.590154523999097 Functional Loss - HECW1 ENSG00000002746 CDS Human protein_coding chr7:43540865 chr7:43540867 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_55376 0 0 0 0 2 HECW1 chr7:43540921 5'GT 43540921 Upstream 55bp
chr7 43540868 43540868 1 + G T UCEC 43540865 + 43540845 43540885 41 CCTGCAGGCTGCCTTCCACCCTGGGTATAGCTTCTCTCCCC CCTGCAGGCTGCCTTCCACCCTGTGTATAGCTTCTCTCCCC < 41bp 0.795077261999548 0.441605468782404 0.8672659 0.1547971 prediction 0.590154523999097 Functional Loss - HECW1 ENSG00000002746 CDS Human protein_coding chr7:43540865 chr7:43540868 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55377 0 0 0 0 2 HECW1 chr7:43540812 3'AG 43540812 Downstream 57bp
chr7 43540868 43540868 1 + G T UCEC 43540865 + 43540845 43540885 41 CCTGCAGGCTGCCTTCCACCCTGGGTATAGCTTCTCTCCCC CCTGCAGGCTGCCTTCCACCCTGTGTATAGCTTCTCTCCCC < 41bp 0.795077261999548 0.441605468782404 0.8672659 0.1547971 prediction 0.590154523999097 Functional Loss - HECW1 ENSG00000002746 CDS Human protein_coding chr7:43540865 chr7:43540868 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55377 0 0 0 0 2 HECW1 chr7:43540921 5'GT 43540921 Upstream 54bp
chr10 82187145 82187145 1 + G T UCEC 82187142 + 82187122 82187162 41 TGTTTATGGGATTTATCCGTCTGGGAGTGTGGTACAACTTC TGTTTATGGGATTTATCCGTCTGTGAGTGTGGTACAACTTC < 41bp 0.795061621835618 0.417767900696862 0.35671544 0.19231707 prediction 0.590123243671237 Functional Loss - FAM213A ENSG00000122378 CDS Human protein_coding chr10:82187142 chr10:82187145 stopgain 0.935 1 24 hm5C_associated_SNPs_55379 0 0 1 0 1 FAM213A chr10:82187088 3'AG 82187088 Downstream 58bp
chr9 34647958 34647958 1 + G T COAD 34647956 + 34647936 34647976 41 GTGCCCAGTACCCTTGGGTGCAGGTTTGTGAGGTCGCCCCT GTGCCCAGTACCCTTGGGTGCATGTTTGTGAGGTCGCCCCT < 41bp 0.795040384844745 0.450727339989846 0.7377149 0.3001102 prediction 0.590080769689491 Functional Loss - GALT ENSG00000213930 CDS Human protein_coding chr9:34647956 chr9:34647958 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_55382 0 0 1 0 1 GALT chr9:34647958 5'GT 34647958 Upstream 1bp
chr19 6744604 6744604 1 + G T SARC 6744601 + 6744581 6744621 41 ATGAACGCAGGGCCACCCGCCTGGGTGCCGGGTATGGGCTC ATGAACGCAGGGCCACCCGCCTGTGTGCCGGGTATGGGCTC < 41bp 0.894434483939635 0.59941812888937 0.59014505 0.052747548 prediction 0.590032710100529 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6744601 chr19:6744604 nonsynonymous SNV 0.550 4 24 hm5C_associated_SNPs_55384 0 0 1 0 1 TRIP10 chr19:6744565 3'AG 6744565 Downstream 40bp
chr9 107535282 107535282 1 + G T LUSC 107535280 + 107535260 107535300 41 TATGAAATGTTTTTCCAGTTCGGGAAAGTGTCAACTACCTA TATGAAATGTTTTTCCAGTTCGTGAAAGTGTCAACTACCTA < 41bp 0.814652228941444 0.519638869904628 0.39975277 0.12296134 prediction 0.590026718073632 Functional Loss - NIPSNAP3B ENSG00000165028 CDS Human protein_coding chr9:107535280 chr9:107535282 synonymous SNV . 0 23 hm5C_associated_SNPs_55387 0 0 0 2 1 NIPSNAP3B chr9:107535278 3'AG 107535278 Downstream 5bp
chr5 36677215 36677215 1 + G T UCEC 36677213 + 36677193 36677233 41 TGATTGGAAACATGAAGGAACAGGGGCAGGCCCTGAGAGAG TGATTGGAAACATGAAGGAACATGGGCAGGCCCTGAGAGAG < 41bp 0.794989294558094 0.470204858235678 0.32981095 0.05301836 prediction 0.589978589116189 Functional Loss - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36677213 chr5:36677215 nonsynonymous SNV 0.953 2 23 hm5C_associated_SNPs_55392 0 0 0 0 1 SLC1A3 chr5:36677286 5'GT 36677286 Upstream 72bp
chr7 100609627 100609627 1 + G T LUAD 100609625 + 100609605 100609645 41 GCTGGTCGGGGGCCTGACGGCCGGCGCCGCGCTGCTGGTGC GCTGGTCGGGGGCCTGACGGCCTGCGCCGCGCTGCTGGTGC < 41bp 0.829850240654658 0.534880771415272 0.6949739 0.05091101 prediction 0.589938938478773 Functional Loss - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100609625 chr7:100609627 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_55394 0 0 0 0 2 MUC3A chr7:100609539 3'AG 100609539 Downstream 89bp
chr7 100609627 100609627 1 + G T LUAD 100609625 + 100609605 100609645 41 GCTGGTCGGGGGCCTGACGGCCGGCGCCGCGCTGCTGGTGC GCTGGTCGGGGGCCTGACGGCCTGCGCCGCGCTGCTGGTGC < 41bp 0.829850240654658 0.534880771415272 0.6949739 0.05091101 prediction 0.589938938478773 Functional Loss - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100609625 chr7:100609627 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_55394 0 0 0 0 2 MUC3A chr7:100609712 5'GT 100609712 Upstream 86bp
chr1 201966632 201966632 1 + A T GBM 201966628 + 201966608 201966648 41 CCAACTGGGGTGAATTCTGGCTCAATGAAGGTTTCACCATG CCAACTGGGGTGAATTCTGGCTCATTGAAGGTTTCACCATG < 41bp 0.794969454843887 0.470677909973814 0.54968494 0.2772752 prediction 0.589938909687774 Functional Loss - RNPEP ENSG00000176393 CDS Human protein_coding chr1:201966628 chr1:201966632 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_55395 0 0 1 0 1 RNPEP chr1:201966682 5'GT 201966682 Upstream 51bp
chr1 65656496 65656496 1 + G T UCEC 65656494 + 65656474 65656514 41 AGTTGGAGAACAGGCGTGGCCAGCACTGGCTCCTTGATGGT AGTTGGAGAACAGGCGTGGCCATCACTGGCTCCTTGATGGT < 41bp 0.794968467311768 0.470071297580568 0.19545001 0.11999342 prediction 0.589936934623536 Functional Loss - AK4 ENSG00000162433 CDS Human protein_coding chr1:65656494 chr1:65656496 nonsynonymous SNV 0.548 0 23 hm5C_associated_SNPs_55396 0 0 1 0 1 AK4 chr1:65656512 5'GT 65656512 Upstream 17bp
chr19 38896245 38896245 1 + A T BLCA 38896241 + 38896221 38896261 41 CCTCAAGCGCCTTGACCTCACTACATCTGCTTTCCACTGGA CCTCAAGCGCCTTGACCTCACTACTTCTGCTTTCCACTGGA < 41bp 0.794967016794656 0.474108582351099 0.89007294 0.27626392 prediction 0.589934033589311 Functional Loss - FAM98C ENSG00000130244 CDS Human protein_coding chr19:38896241 chr19:38896245 synonymous SNV . 0 25 hm5C_associated_SNPs_55397 0 0 1 0 2 FAM98C chr19:38896159 3'AG 38896159 Downstream 87bp
chr19 38896245 38896245 1 + A T BLCA 38896241 + 38896221 38896261 41 CCTCAAGCGCCTTGACCTCACTACATCTGCTTTCCACTGGA CCTCAAGCGCCTTGACCTCACTACTTCTGCTTTCCACTGGA < 41bp 0.794967016794656 0.474108582351099 0.89007294 0.27626392 prediction 0.589934033589311 Functional Loss - FAM98C ENSG00000130244 CDS Human protein_coding chr19:38896241 chr19:38896245 synonymous SNV . 0 25 hm5C_associated_SNPs_55397 0 0 1 0 2 FAM98C chr19:38896275 5'GT 38896275 Upstream 31bp
chr19 52785424 52785424 1 + G T LGG 52785421 + 52785401 52785441 41 CTCAGGAGGAGTGGAAATGCCTGGACCCTGTGCAGAAGGCT CTCAGGAGGAGTGGAAATGCCTGTACCCTGTGCAGAAGGCT < 41bp 0.887089282586862 0.592130253590613 0.07699683 0.07843915 prediction 0.589918057992497 Functional Loss - ZNF766 ENSG00000196214 CDS Human protein_coding chr19:52785421 chr19:52785424 nonsynonymous SNV 0.976 3 24 hm5C_associated_SNPs_55398 0 0 0 0 2 ZNF766 chr19:52785364 3'AG 52785364 Downstream 61bp
chr19 52785424 52785424 1 + G T LGG 52785421 + 52785401 52785441 41 CTCAGGAGGAGTGGAAATGCCTGGACCCTGTGCAGAAGGCT CTCAGGAGGAGTGGAAATGCCTGTACCCTGTGCAGAAGGCT < 41bp 0.887089282586862 0.592130253590613 0.07699683 0.07843915 prediction 0.589918057992497 Functional Loss - ZNF766 ENSG00000196214 CDS Human protein_coding chr19:52785421 chr19:52785424 nonsynonymous SNV 0.976 3 24 hm5C_associated_SNPs_55398 0 0 0 0 2 ZNF766 chr19:52785490 5'GT 52785490 Upstream 67bp
chr2 27282224 27282224 1 + G T STAD 27282221 + 27282201 27282241 41 GGCCTGCAGGGCTGCCAGGCCTGGGCTCTAGTACCCAAAAG GGCCTGCAGGGCTGCCAGGCCTGTGCTCTAGTACCCAAAAG < 41bp 0.887757431872245 0.592803274996685 0.27910566 0.16688636 prediction 0.589908313751121 Functional Loss - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27282221 chr2:27282224 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_55399 0 0 1 0 1 AGBL5 chr2:27282272 5'GT 27282272 Upstream 49bp
chr19 57085872 57085872 1 + G T UCEC 57085870 + 57085850 57085890 41 AAGGTGATGTTAGAAAACTACAGGAACCTAGTTTCAGTGGG AAGGTGATGTTAGAAAACTACATGAACCTAGTTTCAGTGGG < 41bp 0.79495000589288 0.473213837612197 0.2869655 0.07607299 prediction 0.58990001178576 Functional Loss - ZNF470 ENSG00000197016 CDS Human protein_coding chr19:57085870 chr19:57085872 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_55400 0 0 1 0 1 ZNF470 chr19:57085889 5'GT 57085889 Upstream 18bp
chr19 57085873 57085873 1 + G T UCEC 57085870 + 57085850 57085890 41 AAGGTGATGTTAGAAAACTACAGGAACCTAGTTTCAGTGGG AAGGTGATGTTAGAAAACTACAGTAACCTAGTTTCAGTGGG < 41bp 0.79495000589288 0.429266389421424 0.2869655 0.05529812 prediction 0.58990001178576 Functional Loss - ZNF470 ENSG00000197016 CDS Human protein_coding chr19:57085870 chr19:57085873 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_55401 0 0 1 0 1 ZNF470 chr19:57085889 5'GT 57085889 Upstream 17bp
chrX 49355920 49355920 1 + G T UCEC 49355917 + 49355897 49355937 41 ATGAGGGAGCATCTGCAGGTCAAGGTGAGGGAAAGGGAAGA ATGAGGGAGCATCTGCAGGTCAATGTGAGGGAAAGGGAAGA < 41bp 0.794936221112688 0.419334626228619 0.39452454 0.17495915 prediction 0.589872442225376 Functional Loss - GAGE2A ENSG00000189064 CDS Human protein_coding chrX:49355917 chrX:49355920 nonsynonymous SNV 0.236 3 24 hm5C_associated_SNPs_55402 0 0 0 0 1 GAGE2A chrX:49355920 5'GT 49355920 Upstream 1bp
chr4 1305911 1305911 1 + G T BLCA 1305908 + 1305888 1305928 41 TGGACTCCGTGGTCAGCCTGCTGGACGGCGTGGTGGAGAAG TGGACTCCGTGGTCAGCCTGCTGTACGGCGTGGTGGAGAAG < 41bp 0.874969574403366 0.580036144797031 0.37692127 0.18442243 prediction 0.58986685921267 Functional Loss - MAEA ENSG00000090316 CDS Human protein_coding chr4:1305908 chr4:1305911 nonsynonymous SNV 0.910 4 24 hm5C_associated_SNPs_55403 0 0 1 1 1 MAEA chr4:1305949 5'GT 1305949 Upstream 39bp
chr1 32687547 32687547 1 + G T LUSC 32687544 + 32687524 32687564 41 GCTCATGAACCCGCTGCAGGCCGGCGGAGGCCCGCTTCAGC GCTCATGAACCCGCTGCAGGCCGTCGGAGGCCCGCTTCAGC < 41bp 0.794928475977158 0.487796417712277 0.8727485 0.351789 prediction 0.589856951954316 Functional Loss - TMEM234 ENSG00000160055 CDS Human protein_coding chr1:32687544 chr1:32687547 nonsynonymous SNV 0.061 0 24 hm5C_associated_SNPs_55404 0 0 0 0 1 EIF3I chr1:32687633 5'GT 32687633 Upstream 87bp
chr19 52206582 52206582 1 + G T UCEC 52206580 + 52206560 52206600 41 CACCTATTCCTGGAAGTTCGCAGGAGGAGGTGTGAGTCGGG CACCTATTCCTGGAAGTTCGCATGAGGAGGTGTGAGTCGGG < 41bp 0.794924190350266 0.467392970158728 0.9055996 0.4582219 prediction 0.589848380700531 Functional Loss - SPACA6 ENSG00000182310 ncRNA_exonic Human protein_coding chr19:52206580 chr19:52206582 . . 0 23 hm5C_associated_SNPs_55406 0 0 1 0 2 SPACA6 chr19:52206588 5'GT 52206588 Upstream 7bp
chr19 52206582 52206582 1 + G T UCEC 52206580 + 52206560 52206600 41 CACCTATTCCTGGAAGTTCGCAGGAGGAGGTGTGAGTCGGG CACCTATTCCTGGAAGTTCGCATGAGGAGGTGTGAGTCGGG < 41bp 0.794924190350266 0.467392970158728 0.9055996 0.4582219 prediction 0.589848380700531 Functional Loss - SPACA6 ENSG00000182310 ncRNA_exonic Human other chr19:52206580 chr19:52206582 . . 0 23 hm5C_associated_SNPs_55406 0 0 1 0 2 SPACA6 chr19:52206590 5'GT 52206590 Upstream 9bp
chr1 20668945 20668945 1 + G T UCEC 20668943 + 20668923 20668963 41 AGCCCTTGCTGAACAGTGGTCAGGACCTGAACCAGGGCCCC AGCCCTTGCTGAACAGTGGTCATGACCTGAACCAGGGCCCC < 41bp 0.794915373885256 0.445909394281972 0.75752616 0.32489786 prediction 0.589830747770511 Functional Loss - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20668943 chr1:20668945 nonsynonymous SNV 0.681 0 23 hm5C_associated_SNPs_55408 0 0 0 0 1 VWA5B1 chr1:20668925 3'AG 20668925 Downstream 21bp
chr16 88779739 88779739 1 + A C rs11549837 88779735 + 88779715 88779755 41 TTTAGGACCCACCTGATCCTCCACATGGCCCGAGCCCACGG TTTAGGACCCACCTGATCCTCCACCTGGCCCGAGCCCACGG < 41bp 0.794912199980791 0.384402859097817 0.4271729 0.43627512 prediction 0.589824399961581 Functional Loss - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88779735 chr16:88779739 nonsynonymous SNV 0.045 0 25 hm5C_associated_SNPs_55410 0 0 0 0 1 CTU2 chr16:88779720 3'AG 88779720 Downstream 20bp
chr2 208432219 208432219 1 + G T UCEC 208432217 + 208432197 208432237 41 TTGCAGAAAGTGAAGATTCACAGGAGTCAGTGGATAGTGTA TTGCAGAAAGTGAAGATTCACATGAGTCAGTGGATAGTGTA < 41bp 0.814745835909461 0.519837415175506 0.86728776 0.13922885 prediction 0.58981684146791 Functional Loss - CREB1 ENSG00000118260 CDS Human protein_coding chr2:208432217 chr2:208432219 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_55411 0 0 1 2 2 CREB1 chr2:208432187 3'AG 208432187 Downstream 33bp
chr2 208432219 208432219 1 + G T UCEC 208432217 + 208432197 208432237 41 TTGCAGAAAGTGAAGATTCACAGGAGTCAGTGGATAGTGTA TTGCAGAAAGTGAAGATTCACATGAGTCAGTGGATAGTGTA < 41bp 0.814745835909461 0.519837415175506 0.86728776 0.13922885 prediction 0.58981684146791 Functional Loss - CREB1 ENSG00000118260 CDS Human protein_coding chr2:208432217 chr2:208432219 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_55411 0 0 1 2 2 CREB1 chr2:208432287 5'GT 208432287 Upstream 69bp
chr3 131081077 131081077 1 + G T HNSC 131081075 + 131081055 131081095 41 GGATTCGTGGACTCGCAAGACAGCAGCCTGGAGGACGGGCT GGATTCGTGGACTCGCAAGACATCAGCCTGGAGGACGGGCT < 41bp 0.806763374115143 0.511868970147897 0.545133 0.35024953 prediction 0.589788807934493 Functional Loss - NUDT16P1 ENSG00000246082 ncRNA_exonic Human transcribed_unitary_pseudogene chr3:131081075 chr3:131081077 . . 0 23 hm5C_associated_SNPs_55412 0 0 0 0 1 NUDT16P1 chr3:131081016 3'AG 131081016 Downstream 62bp
chr20 16710626 16710626 1 + G T rs557150763 16710623 + 16710603 16710643 41 GGCTTCTAGACTTGTCGGCGCTCGATTGAGGAGCGTGGCTA GGCTTCTAGACTTGTCGGCGCTCTATTGAGGAGCGTGGCTA < 41bp 0.871389020877456 0.576495731304511 0.18599698 0.52519715 prediction 0.58978657914589 Functional Loss - SNRPB2 ENSG00000228809 ncRNA_intronic Human processed_transcript chr20:16710623 chr20:16710626 . . 0 24 hm5C_associated_SNPs_55413 0 0 0 0 1 SNRPB2 chr20:16710709 5'GT 16710709 Upstream 84bp
chr7 100391523 100391523 1 + G T LUAD 100391521 + 100391501 100391541 41 TGTGCCAACCTGGCAGACCCCGGGGACTGCGAGGGCCCCTG TGTGCCAACCTGGCAGACCCCGTGGACTGCGAGGGCCCCTG < 41bp 0.823681297106109 0.528802528487392 0.90492046 0.35951394 prediction 0.589757537237435 Functional Loss - ZAN ENSG00000146839 CDS Human protein_coding chr7:100391521 chr7:100391523 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_55415 0 0 0 0 1 ZAN chr7:100391442 3'AG 100391442 Downstream 82bp
chr1 160390875 160390875 1 + G T THCA 160390872 + 160390852 160390892 41 CAACAACTCCACTGGCCAGTCTCGGGCTGTGATTGCAGCGG CAACAACTCCACTGGCCAGTCTCTGGCTGTGATTGCAGCGG < 41bp 0.794874594376045 0.40321937545675 0.14667648 0.056784034 prediction 0.58974918875209 Functional Loss - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160390872 chr1:160390875 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_55416 0 0 0 0 1 VANGL2 chr1:160390842 3'AG 160390842 Downstream 34bp
chr22 39445561 39445561 1 + G T CESC 39445559 + 39445539 39445579 41 AAGCACCACTCACCTGTCTCCTGGAAGAGGGGCGTCTTCCG AAGCACCACTCACCTGTCTCCTTGAAGAGGGGCGTCTTCCG < 41bp 0.794873662609848 0.462229453883138 0.4741732 0.06735307 prediction 0.589747325219697 Functional Loss - APOBEC3F ENSG00000128394 CDS Human protein_coding chr22:39445559 chr22:39445561 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_55417 0 0 0 0 1 APOBEC3F chr22:39445586 5'GT 39445586 Upstream 26bp
chr14 24842998 24842998 1 + G T LUAD 24842995 + 24842975 24843015 41 GCAAAAACACACGTGTACGGCTGGTGTTCCGGGTACACGTG GCAAAAACACACGTGTACGGCTGTTGTTCCGGGTACACGTG < 41bp 0.794863905748534 0.469979045391419 0.58008236 0.14607272 prediction 0.589727811497068 Functional Loss - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24842995 chr14:24842998 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55418 0 0 0 0 1 NFATC4 chr14:24843073 5'GT 24843073 Upstream 76bp
chr8 22438988 22438988 1 + G C HNSC 22438987 + 22438967 22439007 41 GCGGAGGGCATGCTGCATGCCGAGGCCCAGAGCAAGATCCG GCGGAGGGCATGCTGCATGCCCAGGCCCAGAGCAAGATCCG < 41bp 0.798630115409271 0.503780513880828 0.69993687 0.07137999 prediction 0.589699203056887 Functional Loss - PDLIM2 ENSG00000120913 CDS Human protein_coding chr8:22438987 chr8:22438988 nonsynonymous SNV 0.626 3 22 hm5C_associated_SNPs_55419 0 0 1 0 2 PDLIM2 chr8:22438892 3'AG 22438892 Downstream 97bp
chr8 22438988 22438988 1 + G C HNSC 22438987 + 22438967 22439007 41 GCGGAGGGCATGCTGCATGCCGAGGCCCAGAGCAAGATCCG GCGGAGGGCATGCTGCATGCCCAGGCCCAGAGCAAGATCCG < 41bp 0.798630115409271 0.503780513880828 0.69993687 0.07137999 prediction 0.589699203056887 Functional Loss - PDLIM2 ENSG00000120913 CDS Human protein_coding chr8:22438987 chr8:22438988 nonsynonymous SNV 0.626 3 22 hm5C_associated_SNPs_55419 0 0 1 0 2 PDLIM2 chr8:22439043 5'GT 22439043 Upstream 56bp
chr10 99619229 99619229 1 + G T UCEC 99619227 + 99619207 99619247 41 CTCCTCAGGTCCACAATCTGCAGGAGCTCCGGCGAAGTGCC CTCCTCAGGTCCACAATCTGCATGAGCTCCGGCGAAGTGCC < 41bp 0.866538427002942 0.571692269280953 0.88012266 0.12728152 prediction 0.58969231544398 Functional Loss - GOLGA7B ENSG00000155265 CDS Human protein_coding chr10:99619227 chr10:99619229 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_55420 0 0 0 0 1 GOLGA7B chr10:99619215 3'AG 99619215 Downstream 15bp
chr3 89259054 89259054 1 + G T LUSC 89259051 + 89259031 89259071 41 GATGAACATTACACACCCATCAGGACTTACCAGGTGTGCAA GATGAACATTACACACCCATCAGTACTTACCAGGTGTGCAA < 41bp 0.794845952078977 0.456751019125852 0.41471845 0.057287216 prediction 0.589691904157954 Functional Loss - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89259051 chr3:89259054 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55421 0 0 0 6 1 EPHA3 chr3:89259010 3'AG 89259010 Downstream 45bp
chr14 59954424 59954424 1 + G T UCEC 59954422 + 59954402 59954442 41 GAGGACAGAGAACGAATGCACAGAAATATTGTCAGCCTTGC GAGGACAGAGAACGAATGCACATAAATATTGTCAGCCTTGC < 41bp 0.794832979309534 0.478805553230138 0.2624156 0.16465104 prediction 0.589665958619067 Functional Loss - JKAMP ENSG00000050130 CDS Human protein_coding chr14:59954422 chr14:59954424 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_55424 0 0 1 0 1 JKAMP chr14:59954392 3'AG 59954392 Downstream 33bp
chr7 141427142 141427142 1 + A T BRCA 141427138 + 141427118 141427158 41 TGATGCCGAACAGAGACCTTCTGCAGCAGCTCTGGCCAGAA TGATGCCGAACAGAGACCTTCTGCTGCAGCTCTGGCCAGAA < 41bp 0.794828890072608 0.467883453005527 0.07798192 0.021546125 prediction 0.589657780145216 Functional Loss - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141427138 chr7:141427142 synonymous SNV . 0 25 hm5C_associated_SNPs_55426 0 0 0 0 1 WEE2 chr7:141427104 3'AG 141427104 Downstream 39bp
chr6 44117702 44117702 1 + G T UCEC 44117699 + 44117679 44117719 41 CTTCTTTGAAGCCCACTGGACACGGTAAGGTGCCTCCACTC CTTCTTTGAAGCCCACTGGACACTGTAAGGTGCCTCCACTC < 41bp 0.794826298050432 0.405532121882229 0.09847641 0.011140496 prediction 0.589652596100865 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44117699 chr6:44117702 nonsynonymous SNV 0.977 4 24 hm5C_associated_SNPs_55427 0 0 1 0 1 TMEM63B chr6:44117702 5'GT 44117702 Upstream 1bp
chr4 39776532 39776532 1 + G T UCEC 39776530 + 39776510 39776550 41 CTGCAGAGCCAGATGATCCACAGGATGCTGTAGTAGCAAAT CTGCAGAGCCAGATGATCCACATGATGCTGTAGTAGCAAAT < 41bp 0.813193115855254 0.518371649176402 0.4359287 0.08063725 prediction 0.589642933357704 Functional Loss - UBE2K ENSG00000078140 CDS Human protein_coding chr4:39776530 chr4:39776532 nonsynonymous SNV 0.979 3 23 hm5C_associated_SNPs_55428 0 0 1 0 2 UBE2K chr4:39776454 3'AG 39776454 Downstream 79bp
chr4 39776532 39776532 1 + G T UCEC 39776530 + 39776510 39776550 41 CTGCAGAGCCAGATGATCCACAGGATGCTGTAGTAGCAAAT CTGCAGAGCCAGATGATCCACATGATGCTGTAGTAGCAAAT < 41bp 0.813193115855254 0.518371649176402 0.4359287 0.08063725 prediction 0.589642933357704 Functional Loss - UBE2K ENSG00000078140 CDS Human protein_coding chr4:39776530 chr4:39776532 nonsynonymous SNV 0.979 3 23 hm5C_associated_SNPs_55428 0 0 1 0 2 UBE2K chr4:39776553 5'GT 39776553 Upstream 22bp
chr17 27017988 27017988 1 + G T LUAD 27017986 + 27017966 27018006 41 GCATTGCCCACAGGCGTCCCCAGGGTGAGAGCTATGACCAG GCATTGCCCACAGGCGTCCCCATGGTGAGAGCTATGACCAG < 41bp 0.794802151269905 0.462685667604307 0.9044932 0.16956437 prediction 0.58960430253981 Functional Loss - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27017986 chr17:27017988 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_55429 0 0 1 0 2 SUPT6H chr17:27017939 3'AG 27017939 Downstream 50bp
chr17 27017988 27017988 1 + G T LUAD 27017986 + 27017966 27018006 41 GCATTGCCCACAGGCGTCCCCAGGGTGAGAGCTATGACCAG GCATTGCCCACAGGCGTCCCCATGGTGAGAGCTATGACCAG < 41bp 0.794802151269905 0.462685667604307 0.9044932 0.16956437 prediction 0.58960430253981 Functional Loss - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27017986 chr17:27017988 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_55429 0 0 1 0 2 SUPT6H chr17:27018081 5'GT 27018081 Upstream 94bp
chr10 104495661 104495661 1 + G T UCEC 104495659 + 104495639 104495679 41 TGGCGTGTGGGCTTTTCCCACAGAAATGGTATCTGCTGTTC TGGCGTGTGGGCTTTTCCCACATAAATGGTATCTGCTGTTC < 41bp 0.829608356144579 0.534809565781662 0.46361652 0.1771999 prediction 0.589597580725833 Functional Loss - SFXN2 ENSG00000156398 CDS Human protein_coding chr10:104495659 chr10:104495661 nonsynonymous SNV 0.972 4 23 hm5C_associated_SNPs_55431 0 0 1 2 2 SFXN2 chr10:104495619 3'AG 104495619 Downstream 43bp
chr10 104495661 104495661 1 + G T UCEC 104495659 + 104495639 104495679 41 TGGCGTGTGGGCTTTTCCCACAGAAATGGTATCTGCTGTTC TGGCGTGTGGGCTTTTCCCACATAAATGGTATCTGCTGTTC < 41bp 0.829608356144579 0.534809565781662 0.46361652 0.1771999 prediction 0.589597580725833 Functional Loss - SFXN2 ENSG00000156398 CDS Human protein_coding chr10:104495659 chr10:104495661 nonsynonymous SNV 0.972 4 23 hm5C_associated_SNPs_55431 0 0 1 2 2 SFXN2 chr10:104495666 5'GT 104495666 Upstream 6bp
chr1 231133000 231133000 1 + G T UCEC 231132998 + 231132978 231133018 41 ATTATGCCATCTTTAAATCTCAGGACTTCTGAAGAGGTACT ATTATGCCATCTTTAAATCTCATGACTTCTGAAGAGGTACT < 41bp 0.794784808957268 0.492013733262615 0.76874477 0.29323238 prediction 0.589569617914536 Functional Loss - ARV1 ENSG00000173409 CDS Human protein_coding chr1:231132998 chr1:231133000 nonsynonymous SNV 0.989 4 23 hm5C_associated_SNPs_55432 0 0 1 0 1 ARV1 chr1:231133013 5'GT 231133013 Upstream 14bp
chr16 18591616 18591616 1 + G T UCEC 18591613 + 18591593 18591633 41 CACAGTTTGTGCTGTCCTGCCTGGCGGATCAACCCCCCTTC CACAGTTTGTGCTGTCCTGCCTGTCGGATCAACCCCCCTTC < 41bp 0.794741441581297 0.4302244436561 0.20945445 0.04492247 prediction 0.589482883162595 Functional Loss - ABCC6P1 ENSG00000256340 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:18591613 chr16:18591616 . . 0 24 hm5C_associated_SNPs_55436 0 0 0 0 2 ABCC6P1 chr16:18591532 3'AG 18591532 Downstream 85bp
chr16 18591616 18591616 1 + G T UCEC 18591613 + 18591593 18591633 41 CACAGTTTGTGCTGTCCTGCCTGGCGGATCAACCCCCCTTC CACAGTTTGTGCTGTCCTGCCTGTCGGATCAACCCCCCTTC < 41bp 0.794741441581297 0.4302244436561 0.20945445 0.04492247 prediction 0.589482883162595 Functional Loss - ABCC6P1 ENSG00000256340 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:18591613 chr16:18591616 . . 0 24 hm5C_associated_SNPs_55436 0 0 0 0 2 ABCC6P1 chr16:18591657 5'GT 18591657 Upstream 42bp
chr1 17257835 17257835 1 + G T LUAD 17257833 + 17257813 17257853 41 CACAGTCGCCTGCTCCTCCTCTGGAGGCAGGTGGTGGGGTT CACAGTCGCCTGCTCCTCCTCTTGAGGCAGGTGGTGGGGTT < 41bp 0.828474067431477 0.53373538626056 0.54021704 0.327398 prediction 0.589477362341835 Functional Loss - CROCC ENSG00000058453 CDS Human protein_coding chr1:17257833 chr1:17257835 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_55437 0 0 0 0 2 CROCC chr1:17257786 3'AG 17257786 Downstream 50bp
chr1 17257835 17257835 1 + G T LUAD 17257833 + 17257813 17257853 41 CACAGTCGCCTGCTCCTCCTCTGGAGGCAGGTGGTGGGGTT CACAGTCGCCTGCTCCTCCTCTTGAGGCAGGTGGTGGGGTT < 41bp 0.828474067431477 0.53373538626056 0.54021704 0.327398 prediction 0.589477362341835 Functional Loss - CROCC ENSG00000058453 CDS Human protein_coding chr1:17257833 chr1:17257835 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_55437 0 0 0 0 2 CROCC chr1:17257892 5'GT 17257892 Upstream 58bp
chr14 100317246 100317246 1 + G T STAD 100317243 + 100317223 100317263 41 TGACAGACCGCATTGCTTCACTGGAGCAGAGAGTCCAGATG TGACAGACCGCATTGCTTCACTGTAGCAGAGAGTCCAGATG < 41bp 0.880700529176225 0.585984990649392 0.2621875 0.07582405 prediction 0.589431077053667 Functional Loss - EML1 ENSG00000066629 CDS Human protein_coding chr14:100317243 chr14:100317246 stopgain 1.000 1 24 hm5C_associated_SNPs_55439 0 0 1 0 1 EML1 chr14:100317190 3'AG 100317190 Downstream 57bp
chr11 15197552 15197552 1 + G C HNSC 15197551 + 15197531 15197571 41 GCACGGGTGCACAGCATGAGCGTGCGTCTGACCTGCCATGC GCACGGGTGCACAGCATGAGCCTGCGTCTGACCTGCCATGC < 41bp 0.800837026563378 0.506132035851416 0.7013873 0.37259123 prediction 0.589409981423926 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15197551 chr11:15197552 nonsynonymous SNV 0.966 1 22 hm5C_associated_SNPs_55441 0 0 0 0 1 INSC chr11:15197632 5'GT 15197632 Upstream 81bp
chr3 113499941 113499941 1 + G T LUAD 113499938 + 113499918 113499958 41 CGGGTGCAGCCATGTATGAGCTGGTGAGAGTGGGCCACAGC CGGGTGCAGCCATGTATGAGCTGTTGAGAGTGGGCCACAGC < 41bp 0.794693079612484 0.414968800268394 0.30219296 0.14926052 prediction 0.589386159224967 Functional Loss - ATP6V1A ENSG00000114573 CDS Human protein_coding chr3:113499938 chr3:113499941 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_55442 0 0 1 0 2 ATP6V1A chr3:113499897 3'AG 113499897 Downstream 45bp
chr3 113499941 113499941 1 + G T LUAD 113499938 + 113499918 113499958 41 CGGGTGCAGCCATGTATGAGCTGGTGAGAGTGGGCCACAGC CGGGTGCAGCCATGTATGAGCTGTTGAGAGTGGGCCACAGC < 41bp 0.794693079612484 0.414968800268394 0.30219296 0.14926052 prediction 0.589386159224967 Functional Loss - ATP6V1A ENSG00000114573 CDS Human protein_coding chr3:113499938 chr3:113499941 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_55442 0 0 1 0 2 ATP6V1A chr3:113500025 5'GT 113500025 Upstream 85bp
chr9 116116549 116116549 1 + G T TGCT 116116547 + 116116527 116116567 41 TTGTGGACCAGTGTGAGAGGCTGCAGTTACAGAGTGCTGCC TTGTGGACCAGTGTGAGAGGCTTCAGTTACAGAGTGCTGCC < 41bp 0.794684056172096 0.468453720981247 0.3995222 0.37796232 prediction 0.589368112344193 Functional Loss - BSPRY ENSG00000119411 CDS Human protein_coding chr9:116116547 chr9:116116549 synonymous SNV . 0 23 hm5C_associated_SNPs_55444 0 0 1 0 2 BSPRY chr9:116116520 3'AG 116116520 Downstream 30bp
chr9 116116549 116116549 1 + G T TGCT 116116547 + 116116527 116116567 41 TTGTGGACCAGTGTGAGAGGCTGCAGTTACAGAGTGCTGCC TTGTGGACCAGTGTGAGAGGCTTCAGTTACAGAGTGCTGCC < 41bp 0.794684056172096 0.468453720981247 0.3995222 0.37796232 prediction 0.589368112344193 Functional Loss - BSPRY ENSG00000119411 CDS Human protein_coding chr9:116116547 chr9:116116549 synonymous SNV . 0 23 hm5C_associated_SNPs_55444 0 0 1 0 2 BSPRY chr9:116116618 5'GT 116116618 Upstream 70bp
chr11 71712898 71712898 1 + G T rs115537466 71712896 + 71712876 71712916 41 CCAGCCACAGCAGTCCACAGCAGCAGGGTTAAGACTCAGCA CCAGCCACAGCAGTCCACAGCATCAGGGTTAAGACTCAGCA < 41bp 0.833316690799312 0.538634689618851 0.32217982 0.15021011 prediction 0.589364002360922 Functional Loss - IL18BP ENSG00000137496 CDS Human protein_coding chr11:71712896 chr11:71712898 nonsynonymous SNV 0.064 2 23 hm5C_associated_SNPs_55445 0 0 1 0 1 IL18BP chr11:71712830 3'AG 71712830 Downstream 69bp
chr10 120883010 120883010 1 + A C UCEC 120883006 + 120882986 120883026 41 TGCCTGCCCTGGTGTGGCACCGACAGGACTGGACCATCCTT TGCCTGCCCTGGTGTGGCACCGACCGGACTGGACCATCCTT < 41bp 0.794672958560179 0.389407998085204 0.34866893 0.29313433 prediction 0.589345917120358 Functional Loss - FAM45A ENSG00000119979 CDS Human protein_coding chr10:120883006 chr10:120883010 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_55446 0 0 0 0 2 FAM45A chr10:120882981 3'AG 120882981 Downstream 30bp
chr10 120883010 120883010 1 + A C UCEC 120883006 + 120882986 120883026 41 TGCCTGCCCTGGTGTGGCACCGACAGGACTGGACCATCCTT TGCCTGCCCTGGTGTGGCACCGACCGGACTGGACCATCCTT < 41bp 0.794672958560179 0.389407998085204 0.34866893 0.29313433 prediction 0.589345917120358 Functional Loss - FAM45A ENSG00000119979 CDS Human protein_coding chr10:120883006 chr10:120883010 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_55446 0 0 0 0 2 FAM45A chr10:120883081 5'GT 120883081 Upstream 72bp
chr19 11350899 11350899 1 + G T LIHC 11350897 + 11350877 11350917 41 GCACAGAAGGTGCTACGGGACAGCGTGCAGCGGCTAGAAGT GCACAGAAGGTGCTACGGGACATCGTGCAGCGGCTAGAAGT < 41bp 0.794652366506719 0.45985822432611 0.11241856 0.048713923 prediction 0.589304733013437 Functional Loss - ANGPTL8 ENSG00000130173 CDS Human protein_coding chr19:11350897 chr19:11350899 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_55448 0 0 1 0 2 ANGPTL8 chr19:11350811 3'AG 11350811 Downstream 89bp
chr19 11350899 11350899 1 + G T LIHC 11350897 + 11350877 11350917 41 GCACAGAAGGTGCTACGGGACAGCGTGCAGCGGCTAGAAGT GCACAGAAGGTGCTACGGGACATCGTGCAGCGGCTAGAAGT < 41bp 0.794652366506719 0.45985822432611 0.11241856 0.048713923 prediction 0.589304733013437 Functional Loss - ANGPTL8 ENSG00000130173 CDS Human protein_coding chr19:11350897 chr19:11350899 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_55448 0 0 1 0 2 ANGPTL8 chr19:11350972 5'GT 11350972 Upstream 74bp
chrX 130219639 130219639 1 + G T LUAD 130219636 + 130219616 130219656 41 CACCCTGCCACAGTGATACCCTGGAGCGTCTGCTGAAGGCC CACCCTGCCACAGTGATACCCTGTAGCGTCTGCTGAAGGCC < 41bp 0.898109758513708 0.603464156912251 0.6642832 0.16889241 prediction 0.589291203202915 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130219636 chrX:130219639 stopgain 0.992 1 24 hm5C_associated_SNPs_55450 0 0 0 0 2 ARHGAP36 chrX:130219562 3'AG 130219562 Downstream 78bp
chrX 130219639 130219639 1 + G T LUAD 130219636 + 130219616 130219656 41 CACCCTGCCACAGTGATACCCTGGAGCGTCTGCTGAAGGCC CACCCTGCCACAGTGATACCCTGTAGCGTCTGCTGAAGGCC < 41bp 0.898109758513708 0.603464156912251 0.6642832 0.16889241 prediction 0.589291203202915 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130219636 chrX:130219639 stopgain 0.992 1 24 hm5C_associated_SNPs_55450 0 0 0 0 2 ARHGAP36 chrX:130219710 5'GT 130219710 Upstream 72bp
chr8 146278531 146278531 1 + G T COAD 146278529 + 146278509 146278549 41 GGCAGAAACCCACCCCGAAACAGAGTAAGGGACCCTTCTGT GGCAGAAACCCACCCCGAAACATAGTAAGGGACCCTTCTGT < 41bp 0.79464544788543 0.454488841815542 0.87685984 0.049406946 prediction 0.58929089577086 Functional Loss - C8orf33 ENSG00000182307 CDS Human protein_coding chr8:146278529 chr8:146278531 nonsynonymous SNV 0.964 4 23 hm5C_associated_SNPs_55451 0 0 1 0 1 C8orf33 chr8:146278448 3'AG 146278448 Downstream 84bp
chr11 10521649 10521649 1 + G T SARC 10521647 + 10521627 10521667 41 GCCCAGGTGACGGGGTTTGACAGCGTGGATGATGAGTCCAA GCCCAGGTGACGGGGTTTGACATCGTGGATGATGAGTCCAA < 41bp 0.845764250959972 0.551119865614615 0.8654013 0.40062267 prediction 0.589288770690715 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10521647 chr11:10521649 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_55452 0 0 1 1 1 AMPD3 chr11:10521633 3'AG 10521633 Downstream 17bp
chr2 43934572 43934572 1 + G T LUAD 43934570 + 43934550 43934590 41 AAATAAGTAGCAGCCCTTTCCTGGATGACTCATCTGGGTCA AAATAAGTAGCAGCCCTTTCCTTGATGACTCATCTGGGTCA < 41bp 0.833874457473298 0.539245593388217 0.87009156 0.109793246 prediction 0.589257728170163 Functional Loss - PLEKHH2 ENSG00000152527 CDS Human protein_coding chr2:43934570 chr2:43934572 synonymous SNV . 0 23 hm5C_associated_SNPs_55454 0 0 0 0 1 PLEKHH2 chr2:43934540 3'AG 43934540 Downstream 33bp
chr22 42956231 42956231 1 + G T SKCM 42956228 + 42956208 42956248 41 AGCCACTTGAGTGAGGAGTGCGGGGAGCTTCTCCTGCAAAG AGCCACTTGAGTGAGGAGTGCGGTGAGCTTCTCCTGCAAAG < 41bp 0.899212369348016 0.60458963749833 0.8992592 0.3814659 prediction 0.589245463699372 Functional Loss - SERHL2 ENSG00000183569 CDS Human protein_coding chr22:42956228 chr22:42956231 synonymous SNV . 0 24 hm5C_associated_SNPs_55456 0 0 1 0 2 SERHL2 chr22:42956192 3'AG 42956192 Downstream 40bp
chr22 42956231 42956231 1 + G T SKCM 42956228 + 42956208 42956248 41 AGCCACTTGAGTGAGGAGTGCGGGGAGCTTCTCCTGCAAAG AGCCACTTGAGTGAGGAGTGCGGTGAGCTTCTCCTGCAAAG < 41bp 0.899212369348016 0.60458963749833 0.8992592 0.3814659 prediction 0.589245463699372 Functional Loss - SERHL2 ENSG00000183569 CDS Human protein_coding chr22:42956228 chr22:42956231 synonymous SNV . 0 24 hm5C_associated_SNPs_55456 0 0 1 0 2 SERHL2 chr22:42956271 5'GT 42956271 Upstream 41bp
chr11 61545260 61545260 1 + A C rs200421234 61545256 + 61545236 61545276 41 TCGCGCATGCGGCTGGTGCACTACAGATACAAGCCCGAGTT TCGCGCATGCGGCTGGTGCACTACCGATACAAGCCCGAGTT < 41bp 0.794597641399735 0.373038037408515 0.24045652 0.050902396 prediction 0.58919528279947 Functional Loss - MYRF ENSG00000124920 CDS Human protein_coding chr11:61545256 chr11:61545260 synonymous SNV . 0 25 hm5C_associated_SNPs_55460 0 0 1 0 2 MYRF chr11:61545206 3'AG 61545206 Downstream 55bp
chr11 61545260 61545260 1 + A C rs200421234 61545256 + 61545236 61545276 41 TCGCGCATGCGGCTGGTGCACTACAGATACAAGCCCGAGTT TCGCGCATGCGGCTGGTGCACTACCGATACAAGCCCGAGTT < 41bp 0.794597641399735 0.373038037408515 0.24045652 0.050902396 prediction 0.58919528279947 Functional Loss - MYRF ENSG00000124920 CDS Human protein_coding chr11:61545256 chr11:61545260 synonymous SNV . 0 25 hm5C_associated_SNPs_55460 0 0 1 0 2 MYRF chr11:61545317 5'GT 61545317 Upstream 58bp
chr22 35779128 35779128 1 + A C STAD 35779124 + 35779104 35779144 41 CCCAGGATTTGTCAGAGGCCCTGAAGGAGGCCACCAAGGAG CCCAGGATTTGTCAGAGGCCCTGACGGAGGCCACCAAGGAG < 41bp 0.794594678307057 0.388544387300193 0.1424894 0.052691787 prediction 0.589189356614115 Functional Loss - HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35779124 chr22:35779128 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_55461 0 0 1 0 2 HMOX1 chr22:35779099 3'AG 35779099 Downstream 30bp
chr22 35779128 35779128 1 + A C STAD 35779124 + 35779104 35779144 41 CCCAGGATTTGTCAGAGGCCCTGAAGGAGGCCACCAAGGAG CCCAGGATTTGTCAGAGGCCCTGACGGAGGCCACCAAGGAG < 41bp 0.794594678307057 0.388544387300193 0.1424894 0.052691787 prediction 0.589189356614115 Functional Loss - HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35779124 chr22:35779128 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_55461 0 0 1 0 2 HMOX1 chr22:35779219 5'GT 35779219 Upstream 92bp
chr12 125609570 125609570 1 + G T LUSC 125609568 + 125609548 125609588 41 CATCCTCCTGGGCTCCATCTCAGGTATGGCCCCGGTGGGGA CATCCTCCTGGGCTCCATCTCATGTATGGCCCCGGTGGGGA < 41bp 0.794593166172831 0.453715392693817 0.8764237 0.15148509 prediction 0.589186332345662 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125609568 chr12:125609570 stopgain 0.962 1 23 hm5C_associated_SNPs_55462 0 0 0 0 1 AACS chr12:125609570 5'GT 125609570 Upstream 1bp
chr14 24534916 24534916 1 + G T rs79328356 24534914 + 24534894 24534934 41 GTTCACGGTGTTGCCCTTCCCGGGTTGGAAAGAGCCAAGGG GTTCACGGTGTTGCCCTTCCCGTGTTGGAAAGAGCCAAGGG < 41bp 0.794557836412358 0.473396477256837 0.8954743 0.37419343 prediction 0.589115672824716 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24534914 chr14:24534916 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_55465 0 0 0 0 2 CARMIL3 chr14:24534831 3'AG 24534831 Downstream 86bp
chr14 24534916 24534916 1 + G T rs79328356 24534914 + 24534894 24534934 41 GTTCACGGTGTTGCCCTTCCCGGGTTGGAAAGAGCCAAGGG GTTCACGGTGTTGCCCTTCCCGTGTTGGAAAGAGCCAAGGG < 41bp 0.794557836412358 0.473396477256837 0.8954743 0.37419343 prediction 0.589115672824716 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24534914 chr14:24534916 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_55465 0 0 0 0 2 CARMIL3 chr14:24534959 5'GT 24534959 Upstream 44bp
chr16 28898571 28898571 1 + G T GBM 28898569 + 28898549 28898589 41 CTGACCCCCGAGCTGTCAACCAGGACAAGAAGAACATGCTT CTGACCCCCGAGCTGTCAACCATGACAAGAAGAACATGCTT < 41bp 0.794556793636181 0.468189723187988 0.8953756 0.115056574 prediction 0.589113587272362 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28898569 chr16:28898571 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_55466 0 0 0 0 2 ATP2A1 chr16:28898510 3'AG 28898510 Downstream 62bp
chr16 28898571 28898571 1 + G T GBM 28898569 + 28898549 28898589 41 CTGACCCCCGAGCTGTCAACCAGGACAAGAAGAACATGCTT CTGACCCCCGAGCTGTCAACCATGACAAGAAGAACATGCTT < 41bp 0.794556793636181 0.468189723187988 0.8953756 0.115056574 prediction 0.589113587272362 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28898569 chr16:28898571 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_55466 0 0 0 0 2 ATP2A1 chr16:28898595 5'GT 28898595 Upstream 25bp
chr10 5494850 5494850 1 + G T UCEC 5494848 + 5494828 5494868 41 ATGAAATGTCCCGAGGTGAACAGGATTTAATTGAGGATCTC ATGAAATGTCCCGAGGTGAACATGATTTAATTGAGGATCTC < 41bp 0.829433058969159 0.534888761504266 0.8170643 0.2595998 prediction 0.589088594929785 Functional Loss - NET1 ENSG00000173848 CDS Human protein_coding chr10:5494848 chr10:5494850 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_55469 0 0 1 0 3 NET1 chr10:5494788 3'AG 5494788 Downstream 63bp
chr10 5494850 5494850 1 + G T UCEC 5494848 + 5494828 5494868 41 ATGAAATGTCCCGAGGTGAACAGGATTTAATTGAGGATCTC ATGAAATGTCCCGAGGTGAACATGATTTAATTGAGGATCTC < 41bp 0.829433058969159 0.534888761504266 0.8170643 0.2595998 prediction 0.589088594929785 Functional Loss - NET1 ENSG00000173848 CDS Human protein_coding chr10:5494848 chr10:5494850 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_55469 0 0 1 0 3 NET1 chr10:5494821 3'AG 5494821 Downstream 30bp
chr10 5494850 5494850 1 + G T UCEC 5494848 + 5494828 5494868 41 ATGAAATGTCCCGAGGTGAACAGGATTTAATTGAGGATCTC ATGAAATGTCCCGAGGTGAACATGATTTAATTGAGGATCTC < 41bp 0.829433058969159 0.534888761504266 0.8170643 0.2595998 prediction 0.589088594929785 Functional Loss - NET1 ENSG00000173848 CDS Human protein_coding chr10:5494848 chr10:5494850 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_55469 0 0 1 0 3 NET1 chr10:5494883 5'GT 5494883 Upstream 34bp
chr2 169417767 169417767 1 + G T SARC 169417765 + 169417745 169417785 41 ACTGGGATGTTCGAAGCATTCAGCGCTGGTTTCGACAAAGA ACTGGGATGTTCGAAGCATTCATCGCTGGTTTCGACAAAGA < 41bp 0.827875542798545 0.533341885926945 0.2776227 0.060799032 prediction 0.5890673137432 Functional Loss - CERS6 ENSG00000172292 CDS Human protein_coding chr2:169417765 chr2:169417767 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_55472 0 0 1 0 2 CERS6 chr2:169417702 3'AG 169417702 Downstream 66bp
chr2 169417767 169417767 1 + G T SARC 169417765 + 169417745 169417785 41 ACTGGGATGTTCGAAGCATTCAGCGCTGGTTTCGACAAAGA ACTGGGATGTTCGAAGCATTCATCGCTGGTTTCGACAAAGA < 41bp 0.827875542798545 0.533341885926945 0.2776227 0.060799032 prediction 0.5890673137432 Functional Loss - CERS6 ENSG00000172292 CDS Human protein_coding chr2:169417765 chr2:169417767 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_55472 0 0 1 0 2 CERS6 chr2:169417832 5'GT 169417832 Upstream 66bp
chr1 231339746 231339746 1 + G T HNSC 231339743 + 231339723 231339763 41 CTGGAGCTGGACGACGGTGCCGGGGGACAGTTCCGGGTGAG CTGGAGCTGGACGACGGTGCCGGTGGACAGTTCCGGGTGAG < 41bp 0.892051785341741 0.597550998641309 0.9261972 0.8062538 prediction 0.589001573400866 Functional Loss - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231339743 chr1:231339746 synonymous SNV . 0 24 hm5C_associated_SNPs_55475 0 0 0 0 1 TRIM67 chr1:231339758 5'GT 231339758 Upstream 13bp
chr15 55611541 55611541 1 + G T UCEC 55611538 + 55611518 55611558 41 CTCCAGAACCGCTCCCACGGCAAGATAAAGCTGCGAAAGAG CTCCAGAACCGCTCCCACGGCAATATAAAGCTGCGAAAGAG < 41bp 0.794483848165103 0.431007345448502 0.60771066 0.19611108 prediction 0.588967696330207 Functional Loss - PIGB ENSG00000069943 CDS Human protein_coding chr15:55611538 chr15:55611541 nonsynonymous SNV 0.073 0 24 hm5C_associated_SNPs_55479 0 0 0 0 1 PIGB chr15:55611611 5'GT 55611611 Upstream 71bp
chr16 85838592 85838592 1 + G T LUSC 85838590 + 85838570 85838610 41 CGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCG CGCTCCCAGCTTATATGGATCGTCGTGACCACCCCTTGCCG < 41bp 0.84468900866598 0.550206787920491 0.76960385 0.06532645 prediction 0.588964441490978 Functional Loss - COX4I1 ENSG00000131143 CDS Human protein_coding chr16:85838590 chr16:85838592 synonymous SNV . 0 23 hm5C_associated_SNPs_55480 0 0 1 0 1 COX4I1 chr16:85838543 3'AG 85838543 Downstream 50bp
chr5 156649982 156649982 1 + A C OV 156649978 + 156649958 156649998 41 GCAACGAAGAGTACTGCCTGCTGGACAGTTCTGAGATTCAC GCAACGAAGAGTACTGCCTGCTGGCCAGTTCTGAGATTCAC < 41bp 0.794473193787613 0.396224918296936 0.12172976 0.1554203 prediction 0.588946387575226 Functional Loss - ITK ENSG00000113263 CDS Human protein_coding chr5:156649978 chr5:156649982 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_55483 0 0 0 0 1 ITK chr5:156650024 5'GT 156650024 Upstream 43bp
chr17 18872411 18872411 1 + G T BLCA 18872409 + 18872389 18872429 41 TTTGTGCACATCTGCCTGGGCTGGAACTTCTACCTCTCCAC TTTGTGCACATCTGCCTGGGCTTGAACTTCTACCTCTCCAC < 41bp 0.846787961112115 0.552321186957058 0.15137464 0.040535867 prediction 0.588933548310114 Functional Loss - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18872409 chr17:18872411 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_55485 0 0 0 0 2 SLC5A10 chr17:18872365 3'AG 18872365 Downstream 47bp
chr17 18872411 18872411 1 + G T BLCA 18872409 + 18872389 18872429 41 TTTGTGCACATCTGCCTGGGCTGGAACTTCTACCTCTCCAC TTTGTGCACATCTGCCTGGGCTTGAACTTCTACCTCTCCAC < 41bp 0.846787961112115 0.552321186957058 0.15137464 0.040535867 prediction 0.588933548310114 Functional Loss - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18872409 chr17:18872411 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_55485 0 0 0 0 2 SLC5A10 chr17:18872470 5'GT 18872470 Upstream 60bp
chr7 65552346 65552346 1 + G T LUAD 65552343 + 65552323 65552363 41 GGGCCATTGCAGGCAATCCCCTGGGTGTGGACCGAGAGCTG GGGCCATTGCAGGCAATCCCCTGTGTGTGGACCGAGAGCTG < 41bp 0.899109272156364 0.604676816697772 0.77748895 0.33267233 prediction 0.588864910917184 Functional Loss - ASL ENSG00000126522 CDS Human protein_coding chr7:65552343 chr7:65552346 nonsynonymous SNV 0.985 5 24 hm5C_associated_SNPs_55489 0 0 1 0 2 ASL chr7:65552321 3'AG 65552321 Downstream 26bp
chr7 65552346 65552346 1 + G T LUAD 65552343 + 65552323 65552363 41 GGGCCATTGCAGGCAATCCCCTGGGTGTGGACCGAGAGCTG GGGCCATTGCAGGCAATCCCCTGTGTGTGGACCGAGAGCTG < 41bp 0.899109272156364 0.604676816697772 0.77748895 0.33267233 prediction 0.588864910917184 Functional Loss - ASL ENSG00000126522 CDS Human protein_coding chr7:65552343 chr7:65552346 nonsynonymous SNV 0.985 5 24 hm5C_associated_SNPs_55489 0 0 1 0 2 ASL chr7:65552373 5'GT 65552373 Upstream 28bp
chr9 138441691 138441691 1 + G T UCEC 138441689 + 138441669 138441709 41 TCTTCCCAGCACAGCAGCCCCCGGGTCTGCACCTCCAGAGC TCTTCCCAGCACAGCAGCCCCCTGGTCTGCACCTCCAGAGC < 41bp 0.794432083658909 0.479228050617813 0.52963436 0.09780958 prediction 0.588864167317817 Functional Loss - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138441689 chr9:138441691 synonymous SNV 0.001 0 23 hm5C_associated_SNPs_55490 0 0 0 0 1 OBP2A chr9:138441683 3'AG 138441683 Downstream 9bp
chr10 71690248 71690248 1 + G T LUSC 71690245 + 71690225 71690265 41 CCAGGAGTGAAGGGAGAAAACGGGCACCCAGGGAGCCCAGG CCAGGAGTGAAGGGAGAAAACGGTCACCCAGGGAGCCCAGG < 41bp 0.794423921136273 0.429639427332991 0.9017292 0.34267724 prediction 0.588847842272547 Functional Loss - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71690245 chr10:71690248 synonymous SNV . 0 24 hm5C_associated_SNPs_55491 0 0 0 0 2 COL13A1 chr10:71690156 3'AG 71690156 Downstream 93bp
chr10 71690248 71690248 1 + G T LUSC 71690245 + 71690225 71690265 41 CCAGGAGTGAAGGGAGAAAACGGGCACCCAGGGAGCCCAGG CCAGGAGTGAAGGGAGAAAACGGTCACCCAGGGAGCCCAGG < 41bp 0.794423921136273 0.429639427332991 0.9017292 0.34267724 prediction 0.588847842272547 Functional Loss - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71690245 chr10:71690248 synonymous SNV . 0 24 hm5C_associated_SNPs_55491 0 0 0 0 2 COL13A1 chr10:71690308 5'GT 71690308 Upstream 61bp
chr10 71690247 71690247 1 + G T LUSC 71690245 + 71690225 71690265 41 CCAGGAGTGAAGGGAGAAAACGGGCACCCAGGGAGCCCAGG CCAGGAGTGAAGGGAGAAAACGTGCACCCAGGGAGCCCAGG < 41bp 0.794423921136273 0.477908952396399 0.9017292 0.35970846 prediction 0.588847842272547 Functional Loss - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71690245 chr10:71690247 nonsynonymous SNV 0.213 5 23 hm5C_associated_SNPs_55492 0 0 0 0 2 COL13A1 chr10:71690156 3'AG 71690156 Downstream 92bp
chr10 71690247 71690247 1 + G T LUSC 71690245 + 71690225 71690265 41 CCAGGAGTGAAGGGAGAAAACGGGCACCCAGGGAGCCCAGG CCAGGAGTGAAGGGAGAAAACGTGCACCCAGGGAGCCCAGG < 41bp 0.794423921136273 0.477908952396399 0.9017292 0.35970846 prediction 0.588847842272547 Functional Loss - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71690245 chr10:71690247 nonsynonymous SNV 0.213 5 23 hm5C_associated_SNPs_55492 0 0 0 0 2 COL13A1 chr10:71690308 5'GT 71690308 Upstream 62bp
chr15 92987914 92987914 1 + G T UCEC 92987911 + 92987891 92987931 41 TATGCCCGGGATGTGGGGCTCAAGACAGACCTGGTAACCAT TATGCCCGGGATGTGGGGCTCAATACAGACCTGGTAACCAT < 41bp 0.889870423737327 0.595449256055799 0.74399686 0.24000603 prediction 0.588842335363055 Functional Loss - ST8SIA2 ENSG00000140557 CDS Human protein_coding chr15:92987911 chr15:92987914 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55493 0 0 0 0 1 ST8SIA2 chr15:92987866 3'AG 92987866 Downstream 49bp
chr16 89211809 89211809 1 + G T LUAD 89211807 + 89211787 89211827 41 GCTGGCCCACCCCAGCATCACAGGTGCGTGGCCGGACTTGG GCTGGCCCACCCCAGCATCACATGTGCGTGGCCGGACTTGG < 41bp 0.794418824458921 0.461287465716526 0.9097542 0.821121 prediction 0.588837648917841 Functional Loss - ACSF3 ENSG00000176715 CDS Human protein_coding chr16:89211807 chr16:89211809 nonsynonymous SNV 0.014 3 23 hm5C_associated_SNPs_55494 0 0 1 0 1 ACSF3 chr16:89211809 5'GT 89211809 Upstream 1bp
chr16 77228317 77228317 1 + G T LIHC 77228315 + 77228295 77228335 41 CTCAGTCAGCAGCCCAGCTGCGGGGGGAGCTGCTAGCTGTG CTCAGTCAGCAGCCCAGCTGCGTGGGGAGCTGCTAGCTGTG < 41bp 0.854084063199002 0.559673152088201 0.9331254 0.86869067 prediction 0.588821822221601 Functional Loss - MON1B ENSG00000103111 CDS Human protein_coding chr16:77228315 chr16:77228317 synonymous SNV . 0 23 hm5C_associated_SNPs_55496 0 0 1 0 1 MON1B chr16:77228232 3'AG 77228232 Downstream 86bp
chr15 99828050 99828050 1 + G T OV 99828048 + 99828028 99828068 41 CTCTTGTAAAACTCCAATGTCTGGATCTTAGTGACAATGCC CTCTTGTAAAACTCCAATGTCTTGATCTTAGTGACAATGCC < 41bp 0.794405858422665 0.490417631293003 0.17508152 0.06546965 prediction 0.588811716845329 Functional Loss - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99828048 chr15:99828050 synonymous SNV . 0 23 hm5C_associated_SNPs_55497 0 0 1 3 1 LRRC28 chr15:99828019 3'AG 99828019 Downstream 32bp
chr19 8117952 8117952 1 + G T ESCA 8117949 + 8117929 8117969 41 GCAGCATGAACCTGTGGCTCCTGGCCTGCCTGGTGGCCGGC GCAGCATGAACCTGTGGCTCCTGTCCTGCCTGGTGGCCGGC < 41bp 0.79439417433455 0.41179674198404 0.20709819 0.06407517 prediction 0.588788348669099 Functional Loss - CCL25 ENSG00000131142 CDS Human protein_coding chr19:8117949 chr19:8117952 nonsynonymous SNV 0.699 0 24 hm5C_associated_SNPs_55498 0 0 0 0 1 CCL25 chr19:8118006 5'GT 8118006 Upstream 55bp
chr11 63764374 63764374 1 + G T UCEC 63764372 + 63764352 63764392 41 GCAAGGAAGACCTGGTGTCCCAGGGCTTCACTGAATTCACA GCAAGGAAGACCTGGTGTCCCATGGCTTCACTGAATTCACA < 41bp 0.794384186853145 0.459266113659226 0.7115993 0.057565063 prediction 0.588768373706289 Functional Loss - OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63764372 chr11:63764374 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_55499 0 0 1 0 2 OTUB1 chr11:63764329 3'AG 63764329 Downstream 46bp
chr11 63764374 63764374 1 + G T UCEC 63764372 + 63764352 63764392 41 GCAAGGAAGACCTGGTGTCCCAGGGCTTCACTGAATTCACA GCAAGGAAGACCTGGTGTCCCATGGCTTCACTGAATTCACA < 41bp 0.794384186853145 0.459266113659226 0.7115993 0.057565063 prediction 0.588768373706289 Functional Loss - OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63764372 chr11:63764374 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_55499 0 0 1 0 2 OTUB1 chr11:63764413 5'GT 63764413 Upstream 40bp
chr15 44620906 44620906 1 + G T LUAD 44620903 + 44620883 44620923 41 AGCAACTTGCTGAGCTTCGTCAGGAATTTCTTCGACAAGAA AGCAACTTGCTGAGCTTCGTCAGTAATTTCTTCGACAAGAA < 41bp 0.886613092105809 0.592241078400431 0.67336464 0.17346466 prediction 0.588744027410756 Functional Loss - CASC4 ENSG00000166734 CDS Human protein_coding chr15:44620903 chr15:44620906 stopgain 1.000 1 24 hm5C_associated_SNPs_55501 0 0 1 0 2 CASC4 chr15:44620883 3'AG 44620883 Downstream 24bp
chr15 44620906 44620906 1 + G T LUAD 44620903 + 44620883 44620923 41 AGCAACTTGCTGAGCTTCGTCAGGAATTTCTTCGACAAGAA AGCAACTTGCTGAGCTTCGTCAGTAATTTCTTCGACAAGAA < 41bp 0.886613092105809 0.592241078400431 0.67336464 0.17346466 prediction 0.588744027410756 Functional Loss - CASC4 ENSG00000166734 CDS Human protein_coding chr15:44620903 chr15:44620906 stopgain 1.000 1 24 hm5C_associated_SNPs_55501 0 0 1 0 2 CASC4 chr15:44620985 5'GT 44620985 Upstream 80bp
chr19 58144750 58144750 1 + G T UCEC 58144747 + 58144727 58144767 41 CCCCCGGGTCGCCCGCAGCTCCCGGTCCAGCTCCGCCCACA CCCCCGGGTCGCCCGCAGCTCCCTGTCCAGCTCCGCCCACA < 41bp 0.794359080201807 0.43383664843922 0.56727654 0.05147642 prediction 0.588718160403613 Functional Loss - ZNF211 ENSG00000121417 CDS Human protein_coding chr19:58144747 chr19:58144750 synonymous SNV . 0 24 hm5C_associated_SNPs_55503 0 0 0 0 1 ZNF211 chr19:58144804 5'GT 58144804 Upstream 55bp
chr5 178987118 178987118 1 + G T PAAD 178987115 + 178987095 178987135 41 TGCTCCAGTCGGCTCTGAGCCTGGGCCGCAGCCTGGATGCG TGCTCCAGTCGGCTCTGAGCCTGTGCCGCAGCCTGGATGCG < 41bp 0.794347753194133 0.41406337080716 0.58823353 0.21951127 prediction 0.588695506388266 Functional Loss - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:178987115 chr5:178987118 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55504 0 0 1 0 2 RUFY1 chr5:178987026 3'AG 178987026 Downstream 93bp
chr5 178987118 178987118 1 + G T PAAD 178987115 + 178987095 178987135 41 TGCTCCAGTCGGCTCTGAGCCTGGGCCGCAGCCTGGATGCG TGCTCCAGTCGGCTCTGAGCCTGTGCCGCAGCCTGGATGCG < 41bp 0.794347753194133 0.41406337080716 0.58823353 0.21951127 prediction 0.588695506388266 Functional Loss - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:178987115 chr5:178987118 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55504 0 0 1 0 2 RUFY1 chr5:178987199 5'GT 178987199 Upstream 82bp
chr8 87410811 87410811 1 + G T UCEC 87410809 + 87410789 87410829 41 CTTGTTGTTCAGTAGAAATACAGGAAAATGGTGATGCCTTA CTTGTTGTTCAGTAGAAATACATGAAAATGGTGATGCCTTA < 41bp 0.794343858458594 0.486338752663199 0.25573635 0.16479859 prediction 0.588687716917187 Functional Loss - WWP1 ENSG00000123124 CDS Human protein_coding chr8:87410809 chr8:87410811 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_55505 0 0 0 0 2 WWP1 chr8:87410801 3'AG 87410801 Downstream 11bp
chr8 87410811 87410811 1 + G T UCEC 87410809 + 87410789 87410829 41 CTTGTTGTTCAGTAGAAATACAGGAAAATGGTGATGCCTTA CTTGTTGTTCAGTAGAAATACATGAAAATGGTGATGCCTTA < 41bp 0.794343858458594 0.486338752663199 0.25573635 0.16479859 prediction 0.588687716917187 Functional Loss - WWP1 ENSG00000123124 CDS Human protein_coding chr8:87410809 chr8:87410811 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_55505 0 0 0 0 2 WWP1 chr8:87410867 5'GT 87410867 Upstream 57bp
chr9 139745012 139745012 1 + G T rs149543778 139745009 + 139744989 139745029 41 CAGGCCCCAGGATCCACCATCAAGGTTTGCTTGCCTGTGGA CAGGCCCCAGGATCCACCATCAATGTTTGCTTGCCTGTGGA < 41bp 0.794343379089887 0.421470998620308 0.9116581 0.761539 prediction 0.588686758179774 Functional Loss - PHPT1 ENSG00000054148 CDS Human protein_coding chr9:139745009 chr9:139745012 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_55506 0 0 1 0 2 PHPT1 chr9:139744958 3'AG 139744958 Downstream 55bp
chr9 139745012 139745012 1 + G T rs149543778 139745009 + 139744989 139745029 41 CAGGCCCCAGGATCCACCATCAAGGTTTGCTTGCCTGTGGA CAGGCCCCAGGATCCACCATCAATGTTTGCTTGCCTGTGGA < 41bp 0.794343379089887 0.421470998620308 0.9116581 0.761539 prediction 0.588686758179774 Functional Loss - PHPT1 ENSG00000054148 CDS Human protein_coding chr9:139745009 chr9:139745012 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_55506 0 0 1 0 2 PHPT1 chr9:139745012 5'GT 139745012 Upstream 1bp
chr3 89499424 89499424 1 + G T MESO 89499422 + 89499402 89499442 41 CTGGACTGCTGGCAGAAAGACAGGAACAACAGACCCAAGTT CTGGACTGCTGGCAGAAAGACATGAACAACAGACCCAAGTT < 41bp 0.794323407961635 0.489557559869301 0.6753412 0.14996165 prediction 0.588646815923271 Functional Loss - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89499422 chr3:89499424 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_55509 0 0 0 0 2 EPHA3 chr3:89499327 3'AG 89499327 Downstream 98bp
chr3 89499424 89499424 1 + G T MESO 89499422 + 89499402 89499442 41 CTGGACTGCTGGCAGAAAGACAGGAACAACAGACCCAAGTT CTGGACTGCTGGCAGAAAGACATGAACAACAGACCCAAGTT < 41bp 0.794323407961635 0.489557559869301 0.6753412 0.14996165 prediction 0.588646815923271 Functional Loss - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89499422 chr3:89499424 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_55509 0 0 0 0 2 EPHA3 chr3:89499520 5'GT 89499520 Upstream 97bp
chr7 27194807 27194807 1 - C G LUAD 27194808 - 27194788 27194828 41 GCGGGGCCGCCAGACCTACACGCGCTACCAGACGCTGGAGC GCGGGGCCGCCAGACCTACACCCGCTACCAGACGCTGGAGC < 41bp 0.794315116893761 0.492476120206427 0.34431314 0.1436035 prediction 0.588630233787522 Functional Loss - HOXA7 ENSG00000122592 CDS Human protein_coding chr7:27194808 chr7:27194807 synonymous SNV . 0 22 hm5C_associated_SNPs_55510 0 0 0 0 1 HOXA7 chr7:27194841 3'AG 27194841 Downstream 35bp
chr4 1807569 1807569 1 + G C SKCM 1807568 + 1807548 1807588 41 CCGGGCCTGGACTACTCCTTCGACACCTGCAAGCCGCCCGA CCGGGCCTGGACTACTCCTTCCACACCTGCAAGCCGCCCGA < 41bp 0.795175270566609 0.500867780924892 0.27911198 0.15738118 prediction 0.588614979283434 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1807568 chr4:1807569 nonsynonymous SNV 0.129 4 22 hm5C_associated_SNPs_55511 0 0 1 0 2 FGFR3 chr4:1807477 3'AG 1807477 Downstream 93bp
chr4 1807569 1807569 1 + G C SKCM 1807568 + 1807548 1807588 41 CCGGGCCTGGACTACTCCTTCGACACCTGCAAGCCGCCCGA CCGGGCCTGGACTACTCCTTCCACACCTGCAAGCCGCCCGA < 41bp 0.795175270566609 0.500867780924892 0.27911198 0.15738118 prediction 0.588614979283434 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1807568 chr4:1807569 nonsynonymous SNV 0.129 4 22 hm5C_associated_SNPs_55511 0 0 1 0 2 FGFR3 chr4:1807667 5'GT 1807667 Upstream 99bp
chr16 68108031 68108031 1 + A C rs138890218 68108027 + 68108007 68108047 41 AGTCGCCCCAGGGAAGGTTGCTCCATGCTGCCCAGTCTTCC AGTCGCCCCAGGGAAGGTTGCTCCCTGCTGCCCAGTCTTCC < 41bp 0.79429731243033 0.359422068190153 0.9330138 0.40663394 prediction 0.588594624860659 Functional Loss - DUS2 ENSG00000167264 CDS Human protein_coding chr16:68108027 chr16:68108031 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_55513 0 0 0 0 2 DUS2 chr16:68107937 3'AG 68107937 Downstream 95bp
chr16 68108031 68108031 1 + A C rs138890218 68108027 + 68108007 68108047 41 AGTCGCCCCAGGGAAGGTTGCTCCATGCTGCCCAGTCTTCC AGTCGCCCCAGGGAAGGTTGCTCCCTGCTGCCCAGTCTTCC < 41bp 0.79429731243033 0.359422068190153 0.9330138 0.40663394 prediction 0.588594624860659 Functional Loss - DUS2 ENSG00000167264 CDS Human protein_coding chr16:68108027 chr16:68108031 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_55513 0 0 0 0 2 DUS2 chr16:68108058 5'GT 68108058 Upstream 28bp
chrX 153551582 153551582 1 + G T UCEC 153551579 + 153551559 153551599 41 ATGGTGCTTCCCAGATGGCCCTGGAGGATATAGCCATGTTC ATGGTGCTTCCCAGATGGCCCTGTAGGATATAGCCATGTTC < 41bp 0.794290954600072 0.418281746242475 0.23243979 0.12627429 prediction 0.588581909200143 Functional Loss - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153551579 chrX:153551582 stopgain 0.879 1 24 hm5C_associated_SNPs_55515 0 0 0 0 1 TKTL1 chrX:153551553 3'AG 153551553 Downstream 30bp
chr3 52836408 52836408 1 + A C UCEC 52836404 + 52836384 52836424 41 CGGGTGTGGAGATGGAGTACCCCGAGAACGCTATCCTGGAC CGGGTGTGGAGATGGAGTACCCCGCGAACGCTATCCTGGAC < 41bp 0.794282371938345 0.388748208676997 0.27816963 0.19380939 prediction 0.58856474387669 Functional Loss - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52836404 chr3:52836408 nonsynonymous SNV 0.974 0 25 hm5C_associated_SNPs_55517 0 0 1 0 1 ITIH3 chr3:52836350 3'AG 52836350 Downstream 59bp
chr2 97216922 97216922 1 + G T PRAD 97216920 + 97216900 97216940 41 CCAGGAACAGCACAGAACAGCAGGGCCTGGCCTCTGGGTCT CCAGGAACAGCACAGAACAGCATGGCCTGGCCTCTGGGTCT < 41bp 0.846226341483086 0.551976233926181 0.91702986 0.56214666 prediction 0.58850021511381 Functional Loss - ARID5A ENSG00000196843 CDS Human protein_coding chr2:97216920 chr2:97216922 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_55522 0 0 0 0 1 ARID5A chr2:97216836 3'AG 97216836 Downstream 87bp
chr19 35530151 35530151 1 + A T COAD 35530147 + 35530127 35530167 41 CGCTGCCGCCACGGAGACTGCTGCACAGGAGAATGCGTGAG CGCTGCCGCCACGGAGACTGCTGCTCAGGAGAATGCGTGAG < 41bp 0.794245633476963 0.460556316611086 0.12763903 0.16376603 prediction 0.588491266953927 Functional Loss - SCN1B ENSG00000105711 CDS Human protein_coding chr19:35530147 chr19:35530151 synonymous SNV . 0 25 hm5C_associated_SNPs_55525 0 0 0 0 1 SCN1B chr19:35530162 5'GT 35530162 Upstream 12bp
chr7 75612853 75612853 1 + G T COAD 75612850 + 75612830 75612870 41 CCACCCAGCCCCTTTGATGCCAAGAATCCGTTCCTGGCTGC CCACCCAGCCCCTTTGATGCCAATAATCCGTTCCTGGCTGC < 41bp 0.894214300415817 0.599981346930249 0.34468699 0.09779331 prediction 0.588465906971136 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75612850 chr7:75612853 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_55527 0 0 1 0 1 POR chr7:75612838 3'AG 75612838 Downstream 16bp
chr19 56173907 56173907 1 + G T BLCA 56173904 + 56173884 56173924 41 TCTTCAACGCCCAGATGCGCCTGGGGGGGCTGACCCAGGCC TCTTCAACGCCCAGATGCGCCTGTGGGGGCTGACCCAGGCC < 41bp 0.896902746531976 0.602670733758277 0.90143764 0.84212613 prediction 0.5884640255474 Functional Loss - U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56173904 chr19:56173907 nonsynonymous SNV 0.551 2 24 hm5C_associated_SNPs_55528 0 0 1 0 2 U2AF2 chr19:56173868 3'AG 56173868 Downstream 40bp
chr19 56173907 56173907 1 + G T BLCA 56173904 + 56173884 56173924 41 TCTTCAACGCCCAGATGCGCCTGGGGGGGCTGACCCAGGCC TCTTCAACGCCCAGATGCGCCTGTGGGGGCTGACCCAGGCC < 41bp 0.896902746531976 0.602670733758277 0.90143764 0.84212613 prediction 0.5884640255474 Functional Loss - U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56173904 chr19:56173907 nonsynonymous SNV 0.551 2 24 hm5C_associated_SNPs_55528 0 0 1 0 2 U2AF2 chr19:56173984 5'GT 56173984 Upstream 78bp
chr2 32855736 32855736 1 + G T BLCA 32855733 + 32855713 32855753 41 AGAAGCAGGTAGTAACATTCCTGGATTACTCAACAGATTTG AGAAGCAGGTAGTAACATTCCTGTATTACTCAACAGATTTG < 41bp 0.869221455898939 0.575000951916246 0.22797206 0.13251951 prediction 0.588441007965386 Functional Loss - TTC27 ENSG00000018699 CDS Human protein_coding chr2:32855733 chr2:32855736 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_55529 0 0 1 0 1 TTC27 chr2:32855767 5'GT 32855767 Upstream 32bp
chr16 31733987 31733987 1 + G T HNSC 31733984 + 31733964 31734004 41 GGATGTGGCCATAGAATTCTCTCGGGAGGAGTGGGAACACC GGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGGAACACC < 41bp 0.794211792411382 0.470279978095213 0.16203657 0.16053677 prediction 0.588423584822764 Functional Loss - ZNF720 ENSG00000197302 CDS Human protein_coding chr16:31733984 chr16:31733987 nonsynonymous SNV 0.597 0 24 hm5C_associated_SNPs_55532 0 0 1 0 2 ZNF720 chr16:31733947 3'AG 31733947 Downstream 41bp
chr16 31733987 31733987 1 + G T HNSC 31733984 + 31733964 31734004 41 GGATGTGGCCATAGAATTCTCTCGGGAGGAGTGGGAACACC GGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGGAACACC < 41bp 0.794211792411382 0.470279978095213 0.16203657 0.16053677 prediction 0.588423584822764 Functional Loss - ZNF720 ENSG00000197302 CDS Human protein_coding chr16:31733984 chr16:31733987 nonsynonymous SNV 0.597 0 24 hm5C_associated_SNPs_55532 0 0 1 0 2 ZNF720 chr16:31734073 5'GT 31734073 Upstream 87bp
chr16 72130817 72130817 1 + G T LUAD 72130815 + 72130795 72130835 41 GGCAGAGAGAGCGGGAGCGGCGGGAACATGGTGTCTATGCC GGCAGAGAGAGCGGGAGCGGCGTGAACATGGTGTCTATGCC < 41bp 0.834108359636116 0.539911019087744 0.8846322 0.45779523 prediction 0.588394681096746 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72130815 chr16:72130817 synonymous SNV . 0 23 hm5C_associated_SNPs_55533 0 0 1 1 1 DHX38 chr16:72130908 5'GT 72130908 Upstream 92bp
chr13 48832293 48832293 1 + A C PAAD 48832289 + 48832269 48832309 41 CAGCCTATTTAGATCTTAACCTGGATAAGTGCTATGTGATC CAGCCTATTTAGATCTTAACCTGGCTAAGTGCTATGTGATC < 41bp 0.896274877389214 0.602089973781158 0.1907512 0.22086474 prediction 0.588369807216112 Functional Loss - ITM2B ENSG00000136156 CDS Human protein_coding chr13:48832289 chr13:48832293 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_55535 0 0 1 0 2 ITM2B chr13:48832262 3'AG 48832262 Downstream 32bp
chr13 48832293 48832293 1 + A C PAAD 48832289 + 48832269 48832309 41 CAGCCTATTTAGATCTTAACCTGGATAAGTGCTATGTGATC CAGCCTATTTAGATCTTAACCTGGCTAAGTGCTATGTGATC < 41bp 0.896274877389214 0.602089973781158 0.1907512 0.22086474 prediction 0.588369807216112 Functional Loss - ITM2B ENSG00000136156 CDS Human protein_coding chr13:48832289 chr13:48832293 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_55535 0 0 1 0 2 ITM2B chr13:48832372 5'GT 48832372 Upstream 80bp
chr5 141314074 141314074 1 + G T STAD 141314071 + 141314051 141314091 41 GACCACAGGCCCAAGCTTTCCTCGGGGTGCTTTTCACCAAG GACCACAGGCCCAAGCTTTCCTCTGGGTGCTTTTCACCAAG < 41bp 0.891235957984549 0.597051093602805 0.74271333 0.1461406 prediction 0.588369728763487 Functional Loss - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141314071 chr5:141314074 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_55536 0 0 1 0 2 KIAA0141 chr5:141314059 3'AG 141314059 Downstream 16bp
chr5 141314074 141314074 1 + G T STAD 141314071 + 141314051 141314091 41 GACCACAGGCCCAAGCTTTCCTCGGGGTGCTTTTCACCAAG GACCACAGGCCCAAGCTTTCCTCTGGGTGCTTTTCACCAAG < 41bp 0.891235957984549 0.597051093602805 0.74271333 0.1461406 prediction 0.588369728763487 Functional Loss - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141314071 chr5:141314074 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_55536 0 0 1 0 2 KIAA0141 chr5:141314151 5'GT 141314151 Upstream 78bp
chr2 9613090 9613090 1 + G T GBM 9613087 + 9613067 9613107 41 GTGAAGACGATGAATCCCTCCGAGAAATGGTGGAGCTGGCT GTGAAGACGATGAATCCCTCCGATAAATGGTGGAGCTGGCT < 41bp 0.794182749082869 0.438687857732848 0.37207353 0.16777426 prediction 0.588365498165738 Functional Loss - CPSF3 ENSG00000119203 CDS Human protein_coding chr2:9613087 chr2:9613090 stopgain 1.000 1 24 hm5C_associated_SNPs_55538 0 0 1 0 1 CPSF3 chr2:9613045 3'AG 9613045 Downstream 46bp
chr12 56362585 56362585 1 + G T COAD 56362583 + 56362563 56362603 41 GCTATCTGTTCCAGCTGCTCCAGGGCCTAGCTTTCTGCCAT GCTATCTGTTCCAGCTGCTCCATGGCCTAGCTTTCTGCCAT < 41bp 0.7941623632405 0.460669151296284 0.94707036 0.59773266 prediction 0.588324726481 Functional Loss - CDK2 ENSG00000123374 CDS Human protein_coding chr12:56362583 chr12:56362585 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_55540 0 0 1 0 1 CDK2 chr12:56362562 3'AG 56362562 Downstream 24bp
chr20 61453473 61453473 1 + G T LUAD 61453470 + 61453450 61453490 41 ACCCCCTCCCCAGGGACCTTCTGGACTCCCCGGCCTCCCTG ACCCCCTCCCCAGGGACCTTCTGTACTCCCCGGCCTCCCTG < 41bp 0.890139568244522 0.595978862862649 0.81951874 0.26568583 prediction 0.588321410763747 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61453470 chr20:61453473 nonsynonymous SNV 0.878 4 24 hm5C_associated_SNPs_55541 0 0 1 0 2 COL9A3 chr20:61453463 3'AG 61453463 Downstream 11bp
chr20 61453473 61453473 1 + G T LUAD 61453470 + 61453450 61453490 41 ACCCCCTCCCCAGGGACCTTCTGGACTCCCCGGCCTCCCTG ACCCCCTCCCCAGGGACCTTCTGTACTCCCCGGCCTCCCTG < 41bp 0.890139568244522 0.595978862862649 0.81951874 0.26568583 prediction 0.588321410763747 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61453470 chr20:61453473 nonsynonymous SNV 0.878 4 24 hm5C_associated_SNPs_55541 0 0 1 0 2 COL9A3 chr20:61453516 5'GT 61453516 Upstream 44bp
chr15 58855765 58855765 1 + G C BLCA 58855764 + 58855744 58855784 41 ATCACGCTGGATGTGGATATCGGCGAGCTGATCATGATCAA ATCACGCTGGATGTGGATATCCGCGAGCTGATCATGATCAA < 41bp 0.794159121230757 0.494279076365805 0.9047117 0.60038227 prediction 0.588318242461513 Functional Loss - LIPC ENSG00000166035 CDS Human protein_coding chr15:58855764 chr15:58855765 nonsynonymous SNV 0.070 4 22 hm5C_associated_SNPs_55542 0 0 0 0 1 LIPC chr15:58855704 3'AG 58855704 Downstream 62bp
chr4 78528977 78528977 1 + G T UCEC 78528974 + 78528954 78528994 41 GCCCCGTGGGAATGGTTGTCCAAGAAAAGAAATCATGTAAG GCCCCGTGGGAATGGTTGTCCAATAAAAGAAATCATGTAAG < 41bp 0.794130913228006 0.448222631360052 0.30143172 0.24848613 prediction 0.588261826456013 Functional Loss - CXCL13 ENSG00000156234 CDS Human protein_coding chr4:78528974 chr4:78528977 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_55544 0 0 0 0 1 CXCL13 chr4:78528989 5'GT 78528989 Upstream 13bp
chr16 56871538 56871538 1 + G T LUAD 56871535 + 56871515 56871555 41 AGCAGAATGCTGACAAGGTACTGGAGCTGATGAACAAACTG AGCAGAATGCTGACAAGGTACTGTAGCTGATGAACAAACTG < 41bp 0.794124362797142 0.470310563235914 0.3564016 0.09276593 prediction 0.588248725594285 Functional Loss - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56871535 chr16:56871538 stopgain 0.997 1 24 hm5C_associated_SNPs_55545 0 0 1 0 1 NUP93 chr16:56871520 3'AG 56871520 Downstream 19bp
chr4 56726645 56726645 1 + A T LUAD 56726641 + 56726621 56726661 41 AAATCCGATAAGGGAGATTTCTACAAAAGGCAGATTGCATG AAATCCGATAAGGGAGATTTCTACTAAAGGCAGATTGCATG < 41bp 0.841323458364304 0.547199977680179 0.87025666 0.04736647 prediction 0.58824696136825 Functional Loss - EXOC1 ENSG00000090989 CDS Human protein_coding chr4:56726641 chr4:56726645 stopgain 1.000 1 25 hm5C_associated_SNPs_55546 0 0 0 0 2 EXOC1 chr4:56726577 3'AG 56726577 Downstream 69bp
chr4 56726645 56726645 1 + A T LUAD 56726641 + 56726621 56726661 41 AAATCCGATAAGGGAGATTTCTACAAAAGGCAGATTGCATG AAATCCGATAAGGGAGATTTCTACTAAAGGCAGATTGCATG < 41bp 0.841323458364304 0.547199977680179 0.87025666 0.04736647 prediction 0.58824696136825 Functional Loss - EXOC1 ENSG00000090989 CDS Human protein_coding chr4:56726641 chr4:56726645 stopgain 1.000 1 25 hm5C_associated_SNPs_55546 0 0 0 0 2 EXOC1 chr4:56726707 5'GT 56726707 Upstream 63bp
chr3 38163174 38163174 1 + G T ESCA 38163172 + 38163152 38163192 41 GAGCTGCAGCTCTCCACCAGCTGGGTGGACTTTGGGACCTG GAGCTGCAGCTCTCCACCAGCTTGGTGGACTTTGGGACCTG < 41bp 0.830377942447248 0.536263753062217 0.88885885 0.8082155 prediction 0.588228378770062 Functional Loss - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38163172 chr3:38163174 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_55548 0 0 0 0 2 DLEC1 chr3:38163119 3'AG 38163119 Downstream 56bp
chr3 38163174 38163174 1 + G T ESCA 38163172 + 38163152 38163192 41 GAGCTGCAGCTCTCCACCAGCTGGGTGGACTTTGGGACCTG GAGCTGCAGCTCTCCACCAGCTTGGTGGACTTTGGGACCTG < 41bp 0.830377942447248 0.536263753062217 0.88885885 0.8082155 prediction 0.588228378770062 Functional Loss - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38163172 chr3:38163174 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_55548 0 0 0 0 2 DLEC1 chr3:38163272 5'GT 38163272 Upstream 99bp
chr13 24892982 24892982 1 + G T COAD 24892980 + 24892960 24893000 41 ACCAGGACGTCCTGGCAGCCCGGGGAAGGATGGGACGAGTG ACCAGGACGTCCTGGCAGCCCGTGGAAGGATGGGACGAGTG < 41bp 0.85101209425413 0.5569002508241 0.7831663 0.35564196 prediction 0.588223686860061 Functional Loss - C1QTNF9 ENSG00000240654 CDS Human protein_coding chr13:24892980 chr13:24892982 nonsynonymous SNV 0.144 5 23 hm5C_associated_SNPs_55549 0 0 0 0 2 C1QTNF9 chr13:24892956 3'AG 24892956 Downstream 27bp
chr13 24892982 24892982 1 + G T COAD 24892980 + 24892960 24893000 41 ACCAGGACGTCCTGGCAGCCCGGGGAAGGATGGGACGAGTG ACCAGGACGTCCTGGCAGCCCGTGGAAGGATGGGACGAGTG < 41bp 0.85101209425413 0.5569002508241 0.7831663 0.35564196 prediction 0.588223686860061 Functional Loss - C1QTNF9 ENSG00000240654 CDS Human protein_coding chr13:24892980 chr13:24892982 nonsynonymous SNV 0.144 5 23 hm5C_associated_SNPs_55549 0 0 0 0 2 C1QTNF9 chr13:24893018 5'GT 24893018 Upstream 37bp
chr1 117603146 117603146 1 + G T LIHC 117603144 + 117603124 117603164 41 GGAAAGAGCTTCTACGTGTGCCGGGCAGACACGTGCAGCTT GGAAAGAGCTTCTACGTGTGCCTGGCAGACACGTGCAGCTT < 41bp 0.794110459398281 0.450957514105643 0.5481944 0.09314042 prediction 0.588220918796561 Functional Loss - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117603144 chr1:117603146 nonsynonymous SNV 0.940 0 23 hm5C_associated_SNPs_55550 0 0 1 0 2 TTF2 chr1:117603077 3'AG 117603077 Downstream 70bp
chr1 117603146 117603146 1 + G T LIHC 117603144 + 117603124 117603164 41 GGAAAGAGCTTCTACGTGTGCCGGGCAGACACGTGCAGCTT GGAAAGAGCTTCTACGTGTGCCTGGCAGACACGTGCAGCTT < 41bp 0.794110459398281 0.450957514105643 0.5481944 0.09314042 prediction 0.588220918796561 Functional Loss - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117603144 chr1:117603146 nonsynonymous SNV 0.940 0 23 hm5C_associated_SNPs_55550 0 0 1 0 2 TTF2 chr1:117603179 5'GT 117603179 Upstream 34bp
chr14 105398657 105398657 1 + G T SARC 105398655 + 105398635 105398675 41 CCATTCAGCAGGGTGAACCACAGCAAGTTCATGGTCACGGA CCATTCAGCAGGGTGAACCACATCAAGTTCATGGTCACGGA < 41bp 0.840741889425344 0.546632017627885 0.18946427 0.12981689 prediction 0.588219743594918 Functional Loss - PLD4 ENSG00000166428 CDS Human protein_coding chr14:105398655 chr14:105398657 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_55551 0 0 0 0 2 PLD4 chr14:105398596 3'AG 105398596 Downstream 62bp
chr14 105398657 105398657 1 + G T SARC 105398655 + 105398635 105398675 41 CCATTCAGCAGGGTGAACCACAGCAAGTTCATGGTCACGGA CCATTCAGCAGGGTGAACCACATCAAGTTCATGGTCACGGA < 41bp 0.840741889425344 0.546632017627885 0.18946427 0.12981689 prediction 0.588219743594918 Functional Loss - PLD4 ENSG00000166428 CDS Human protein_coding chr14:105398655 chr14:105398657 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_55551 0 0 0 0 2 PLD4 chr14:105398692 5'GT 105398692 Upstream 36bp
chr17 38457815 38457815 1 + G T ESCA 38457812 + 38457792 38457832 41 CTTTCAGGGCTCTTGGAAGCCAGGGGCATTTTAGGATTAAA CTTTCAGGGCTCTTGGAAGCCAGTGGCATTTTAGGATTAAA < 41bp 0.794089893180337 0.42363509782392 0.8729224 0.18266097 prediction 0.588179786360673 Functional Loss - CDC6 ENSG00000094804 CDS Human protein_coding chr17:38457812 chr17:38457815 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_55554 0 0 1 0 2 CDC6 chr17:38457720 3'AG 38457720 Downstream 96bp
chr17 38457815 38457815 1 + G T ESCA 38457812 + 38457792 38457832 41 CTTTCAGGGCTCTTGGAAGCCAGGGGCATTTTAGGATTAAA CTTTCAGGGCTCTTGGAAGCCAGTGGCATTTTAGGATTAAA < 41bp 0.794089893180337 0.42363509782392 0.8729224 0.18266097 prediction 0.588179786360673 Functional Loss - CDC6 ENSG00000094804 CDS Human protein_coding chr17:38457812 chr17:38457815 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_55554 0 0 1 0 2 CDC6 chr17:38457860 5'GT 38457860 Upstream 46bp
chr19 49464114 49464114 1 + G T COAD 49464111 + 49464091 49464131 41 CTGATCAGAACCATCATGGGCTGGACATTGGACTTCCTCCG CTGATCAGAACCATCATGGGCTGTACATTGGACTTCCTCCG < 41bp 0.794088979470819 0.428884366452361 0.17746145 0.124889106 prediction 0.588177958941638 Functional Loss - BAX ENSG00000087088 CDS Human protein_coding chr19:49464111 chr19:49464114 nonsynonymous SNV 0.985 4 24 hm5C_associated_SNPs_55555 0 0 1 0 2 BAX chr19:49464067 3'AG 49464067 Downstream 48bp
chr19 49464114 49464114 1 + G T COAD 49464111 + 49464091 49464131 41 CTGATCAGAACCATCATGGGCTGGACATTGGACTTCCTCCG CTGATCAGAACCATCATGGGCTGTACATTGGACTTCCTCCG < 41bp 0.794088979470819 0.428884366452361 0.17746145 0.124889106 prediction 0.588177958941638 Functional Loss - BAX ENSG00000087088 CDS Human protein_coding chr19:49464111 chr19:49464114 nonsynonymous SNV 0.985 4 24 hm5C_associated_SNPs_55555 0 0 1 0 2 BAX chr19:49464171 5'GT 49464171 Upstream 58bp
chr2 71185191 71185191 1 + G T LUSC 71185189 + 71185169 71185209 41 CTGCCAGTTTGCCCAGTATGCGGAGATCGTCCACTTCACCC CTGCCAGTTTGCCCAGTATGCGTAGATCGTCCACTTCACCC < 41bp 0.867724309831834 0.573642169707385 0.91181064 0.03310904 prediction 0.588164280248898 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71185189 chr2:71185191 stopgain 0.963 1 23 hm5C_associated_SNPs_55556 0 0 0 0 2 ATP6V1B1 chr2:71185176 3'AG 71185176 Downstream 16bp
chr2 71185191 71185191 1 + G T LUSC 71185189 + 71185169 71185209 41 CTGCCAGTTTGCCCAGTATGCGGAGATCGTCCACTTCACCC CTGCCAGTTTGCCCAGTATGCGTAGATCGTCCACTTCACCC < 41bp 0.867724309831834 0.573642169707385 0.91181064 0.03310904 prediction 0.588164280248898 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71185189 chr2:71185191 stopgain 0.963 1 23 hm5C_associated_SNPs_55556 0 0 0 0 2 ATP6V1B1 chr2:71185274 5'GT 71185274 Upstream 84bp
chr17 46023331 46023331 1 + G T STAD 46023329 + 46023309 46023349 41 TTGGGGCTGTGGTCAGCCACCAGAGTTCTGTGATCCCTGAT TTGGGGCTGTGGTCAGCCACCATAGTTCTGTGATCCCTGAT < 41bp 0.794080139924073 0.462215020495184 0.7278951 0.114103526 prediction 0.588160279848147 Functional Loss - PNPO ENSG00000108439 CDS Human protein_coding chr17:46023329 chr17:46023331 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_55557 0 0 1 0 1 PNPO chr17:46023355 5'GT 46023355 Upstream 25bp
chr19 4164540 4164540 1 + G T OV 4164537 + 4164517 4164557 41 GGCCTCCTACCTCCTGCGACCTGGGGCTGGGCACTGTCAGG GGCCTCCTACCTCCTGCGACCTGTGGCTGGGCACTGTCAGG < 41bp 0.794076643066899 0.398305989272514 0.21424696 0.025143236 prediction 0.588153286133797 Functional Loss - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4164537 chr19:4164540 nonsynonymous SNV 0.002 3 24 hm5C_associated_SNPs_55559 0 0 1 0 3 CREB3L3 chr19:4164500 3'AG 4164500 Downstream 41bp
chr19 4164540 4164540 1 + G T OV 4164537 + 4164517 4164557 41 GGCCTCCTACCTCCTGCGACCTGGGGCTGGGCACTGTCAGG GGCCTCCTACCTCCTGCGACCTGTGGCTGGGCACTGTCAGG < 41bp 0.794076643066899 0.398305989272514 0.21424696 0.025143236 prediction 0.588153286133797 Functional Loss - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4164537 chr19:4164540 nonsynonymous SNV 0.002 3 24 hm5C_associated_SNPs_55559 0 0 1 0 3 CREB3L3 chr19:4164506 3'AG 4164506 Downstream 35bp
chr19 4164540 4164540 1 + G T OV 4164537 + 4164517 4164557 41 GGCCTCCTACCTCCTGCGACCTGGGGCTGGGCACTGTCAGG GGCCTCCTACCTCCTGCGACCTGTGGCTGGGCACTGTCAGG < 41bp 0.794076643066899 0.398305989272514 0.21424696 0.025143236 prediction 0.588153286133797 Functional Loss - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4164537 chr19:4164540 nonsynonymous SNV 0.002 3 24 hm5C_associated_SNPs_55559 0 0 1 0 3 CREB3L3 chr19:4164637 5'GT 4164637 Upstream 98bp
chr9 71992648 71992648 1 + G T CESC 71992646 + 71992626 71992666 41 ACGTTTTACTCGTGCACACCCCGGATGAACCGCAGGTATCG ACGTTTTACTCGTGCACACCCCTGATGAACCGCAGGTATCG < 41bp 0.794076254604026 0.45820387220534 0.53688645 0.08820295 prediction 0.588152509208052 Functional Loss - FAM189A2 ENSG00000135063 CDS Human protein_coding chr9:71992646 chr9:71992648 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_55560 0 0 0 0 1 FAM189A2 chr9:71992660 5'GT 71992660 Upstream 13bp
chr2 149539328 149539328 1 + A C UCEC 149539324 + 149539304 149539344 41 ACAGCAATCTCAGCATTCCTCGCAACAGACACATCCAAAAG ACAGCAATCTCAGCATTCCTCGCACCAGACACATCCAAAAG < 41bp 0.794053581491525 0.381960001933561 0.19324464 0.17474362 prediction 0.58810716298305 Functional Loss - EPC2 ENSG00000135999 CDS Human protein_coding chr2:149539324 chr2:149539328 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_55561 0 0 0 0 1 EPC2 chr2:149539349 5'GT 149539349 Upstream 22bp
chrX 15818048 15818048 1 + G T UCEC 15818045 + 15818025 15818065 41 CTTTTATTGAAGAACAACAACTAGAAGAAGAGAAGCTATTG CTTTTATTGAAGAACAACAACTATAAGAAGAGAAGCTATTG < 41bp 0.794053176509415 0.433234999054055 0.89483976 0.848898 prediction 0.588106353018831 Functional Loss - ZRSR2 ENSG00000169249 CDS Human protein_coding chrX:15818045 chrX:15818048 stopgain 0.876 1 24 hm5C_associated_SNPs_55562 0 0 1 0 2 ZRSR2 chrX:15817995 3'AG 15817995 Downstream 54bp
chrX 15818048 15818048 1 + G T UCEC 15818045 + 15818025 15818065 41 CTTTTATTGAAGAACAACAACTAGAAGAAGAGAAGCTATTG CTTTTATTGAAGAACAACAACTATAAGAAGAGAAGCTATTG < 41bp 0.794053176509415 0.433234999054055 0.89483976 0.848898 prediction 0.588106353018831 Functional Loss - ZRSR2 ENSG00000169249 CDS Human protein_coding chrX:15818045 chrX:15818048 stopgain 0.876 1 24 hm5C_associated_SNPs_55562 0 0 1 0 2 ZRSR2 chrX:15818076 5'GT 15818076 Upstream 29bp
chr8 58196774 58196774 1 + G T rs116100898 58196772 + 58196752 58196792 41 GCCCAGAAGTGGTAACTTTTCTGGTGCACAGAAAATGCCAG GCCCAGAAGTGGTAACTTTTCTTGTGCACAGAAAATGCCAG < 41bp 0.794040028765761 0.485413633691741 0.33628798 0.09511089 prediction 0.588080057531522 Functional Loss - LINC00588 ENSG00000215117 ncRNA_exonic Human lincRNA chr8:58196772 chr8:58196774 . . 0 23 hm5C_associated_SNPs_55563 0 0 0 0 2 LINC00588 chr8:58196720 3'AG 58196720 Downstream 55bp
chr8 58196774 58196774 1 + G T rs116100898 58196772 + 58196752 58196792 41 GCCCAGAAGTGGTAACTTTTCTGGTGCACAGAAAATGCCAG GCCCAGAAGTGGTAACTTTTCTTGTGCACAGAAAATGCCAG < 41bp 0.794040028765761 0.485413633691741 0.33628798 0.09511089 prediction 0.588080057531522 Functional Loss - LINC00588 ENSG00000215117 ncRNA_exonic Human lincRNA chr8:58196772 chr8:58196774 . . 0 23 hm5C_associated_SNPs_55563 0 0 0 0 2 LINC00588 chr8:58196834 5'GT 58196834 Upstream 61bp
chr19 54403978 54403978 1 + G T LAML 54403976 + 54403956 54403996 41 ACGACAACCCGCACCTTCTGCGGGACCCCGGACTACATAGC ACGACAACCCGCACCTTCTGCGTGACCCCGGACTACATAGC < 41bp 0.794035094062453 0.457439605632596 0.85810554 0.28117323 prediction 0.588070188124906 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403976 chr19:54403978 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_55564 0 0 0 0 1 PRKCG chr19:54404003 5'GT 54404003 Upstream 26bp
chr10 103360969 103360969 1 + A C rs115312045 103360965 + 103360945 103360985 41 ATTTGCCTTCTGCAGCCTATCTTCATGCGCAAGGACACCAA ATTTGCCTTCTGCAGCCTATCTTCCTGCGCAAGGACACCAA < 41bp 0.794034600071932 0.369458640294513 0.42027995 0.017785907 prediction 0.588069200143864 Functional Loss - DPCD ENSG00000166171 CDS Human protein_coding chr10:103360965 chr10:103360969 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_55565 0 0 0 0 1 DPCD chr10:103360960 3'AG 103360960 Downstream 10bp
chrX 69645218 69645218 1 + G T THYM 69645215 + 69645195 69645235 41 CCTTTGCAGTGCGACTGTATCTGGTTTGGCCTGCTCTTCCT CCTTTGCAGTGCGACTGTATCTGTTTTGGCCTGCTCTTCCT < 41bp 0.89111428182017 0.59708823450725 0.5302835 0.26638752 prediction 0.588052094625839 Functional Loss - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69645215 chrX:69645218 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55567 0 0 0 0 2 GDPD2 chrX:69645204 3'AG 69645204 Downstream 15bp
chrX 69645218 69645218 1 + G T THYM 69645215 + 69645195 69645235 41 CCTTTGCAGTGCGACTGTATCTGGTTTGGCCTGCTCTTCCT CCTTTGCAGTGCGACTGTATCTGTTTTGGCCTGCTCTTCCT < 41bp 0.89111428182017 0.59708823450725 0.5302835 0.26638752 prediction 0.588052094625839 Functional Loss - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69645215 chrX:69645218 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55567 0 0 0 0 2 GDPD2 chrX:69645307 5'GT 69645307 Upstream 90bp
chr4 3447863 3447863 1 + G T CESC 3447860 + 3447840 3447880 41 CAGGCCTGCGGCAGGAGGCACAAGAAGAGGACGTTCCTGCG CAGGCCTGCGGCAGGAGGCACAATAAGAGGACGTTCCTGCG < 41bp 0.793995176714652 0.412048435140984 0.9193072 0.90363145 prediction 0.587990353429304 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3447860 chr4:3447863 nonsynonymous SNV 0.961 2 24 hm5C_associated_SNPs_55569 0 0 1 0 1 HGFAC chr4:3447769 3'AG 3447769 Downstream 95bp
chr1 46034841 46034841 1 + A C rs146516593 46034837 + 46034817 46034857 41 GTTTGACTTCACCTTTAGCCCAGAAGAGATGAAGCAGCTAA GTTTGACTTCACCTTTAGCCCAGACGAGATGAAGCAGCTAA < 41bp 0.793995059838862 0.405827170549038 0.24969059 0.18167606 prediction 0.587990119677724 Functional Loss - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46034837 chr1:46034841 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_55570 0 0 1 1 2 AKR1A1 chr1:46034815 3'AG 46034815 Downstream 27bp
chr1 46034841 46034841 1 + A C rs146516593 46034837 + 46034817 46034857 41 GTTTGACTTCACCTTTAGCCCAGAAGAGATGAAGCAGCTAA GTTTGACTTCACCTTTAGCCCAGACGAGATGAAGCAGCTAA < 41bp 0.793995059838862 0.405827170549038 0.24969059 0.18167606 prediction 0.587990119677724 Functional Loss - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46034837 chr1:46034841 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_55570 0 0 1 1 2 AKR1A1 chr1:46034901 5'GT 46034901 Upstream 61bp
chr4 25674860 25674860 1 + G T UCEC 25674857 + 25674837 25674877 41 GGGCAGGTCGCCACTGTCATCAAGAAGACCATCAACACTGG GGGCAGGTCGCCACTGTCATCAATAAGACCATCAACACTGG < 41bp 0.889135498500238 0.595178166916433 0.16728741 0.06815523 prediction 0.58791466316761 Functional Loss - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25674857 chr4:25674860 nonsynonymous SNV 0.972 5 24 hm5C_associated_SNPs_55572 0 0 0 0 1 SLC34A2 chr4:25674876 5'GT 25674876 Upstream 17bp
chr19 3747862 3747862 1 + G T SARC 3747860 + 3747840 3747880 41 GCCGACAGCTCCGCTGACCTCAGCTGCGACAGCCGCGTTAA GCCGACAGCTCCGCTGACCTCATCTGCGACAGCCGCGTTAA < 41bp 0.793946927805755 0.455121182692574 0.8960953 0.36515212 prediction 0.587893855611511 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3747860 chr19:3747862 nonsynonymous SNV 0.797 4 23 hm5C_associated_SNPs_55575 0 0 0 0 1 TJP3 chr19:3747792 3'AG 3747792 Downstream 71bp
chr1 226016540 226016540 1 + G T DLBC 226016537 + 226016517 226016557 41 TGAAGATGGGTGGTGGGGGCCAGGCACGAGGTCCGCAGCCA TGAAGATGGGTGGTGGGGGCCAGTCACGAGGTCCGCAGCCA < 41bp 0.793917646144269 0.399571989133808 0.7843596 0.21519166 prediction 0.587835292288538 Functional Loss - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226016537 chr1:226016540 nonsynonymous SNV 0.005 4 24 hm5C_associated_SNPs_55577 0 0 1 0 1 EPHX1 chr1:226016613 5'GT 226016613 Upstream 74bp
chr16 78064372 78064372 1 + G T UCEC 78064369 + 78064349 78064389 41 CTCCGAGGCACTAAAGTTCACAAGAAATGCTACCTTGCTTC CTCCGAGGCACTAAAGTTCACAATAAATGCTACCTTGCTTC < 41bp 0.880303526353314 0.586405745544361 0.3178596 0.0454455 prediction 0.587795561617905 Functional Loss - CLEC3A ENSG00000166509 CDS Human protein_coding chr16:78064369 chr16:78064372 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_55579 0 0 0 0 1 CLEC3A chr16:78064344 3'AG 78064344 Downstream 29bp
chr11 61539148 61539148 1 + G T SARC 61539145 + 61539125 61539165 41 TCCCCAGGGTCCGCTCTCCCCGGGCCCTGGTTCCTTGCCTC TCCCCAGGGTCCGCTCTCCCCGGTCCCTGGTTCCTTGCCTC < 41bp 0.793895504832045 0.398280638915325 0.9281467 0.39172602 prediction 0.587791009664091 Functional Loss - MYRF ENSG00000124920 CDS Human protein_coding chr11:61539145 chr11:61539148 nonsynonymous SNV 0.048 4 24 hm5C_associated_SNPs_55580 0 0 1 0 1 MYRF chr11:61539222 5'GT 61539222 Upstream 75bp
chr16 8862807 8862807 1 + G T LUSC 8862804 + 8862784 8862824 41 AGTTTGTGAAAGAGAACCAACAGGAGGAGGCCCGCTGTCTG AGTTTGTGAAAGAGAACCAACAGTAGGAGGCCCGCTGTCTG < 41bp 0.895133708512 0.601251854361713 0.8516825 0.29104498 prediction 0.587763708300574 Functional Loss - ABAT ENSG00000183044 CDS Human protein_coding chr16:8862804 chr16:8862807 stopgain 0.787 1 24 hm5C_associated_SNPs_55582 0 0 1 0 1 ABAT chr16:8862830 5'GT 8862830 Upstream 24bp
chr16 50756539 50756539 1 + G T STAD 50756536 + 50756516 50756556 41 TCTTTTGGCCTTTTCAGATTCTGGGGCAACAGAGTGGGTGA TCTTTTGGCCTTTTCAGATTCTGTGGCAACAGAGTGGGTGA < 41bp 0.876260082252273 0.582405921526892 0.9017616 0.55420977 prediction 0.587708321450763 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50756536 chr16:50756539 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55583 0 0 0 1 2 NOD2 chr16:50756533 3'AG 50756533 Downstream 7bp
chr16 50756539 50756539 1 + G T STAD 50756536 + 50756516 50756556 41 TCTTTTGGCCTTTTCAGATTCTGGGGCAACAGAGTGGGTGA TCTTTTGGCCTTTTCAGATTCTGTGGCAACAGAGTGGGTGA < 41bp 0.876260082252273 0.582405921526892 0.9017616 0.55420977 prediction 0.587708321450763 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50756536 chr16:50756539 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55583 0 0 0 1 2 NOD2 chr16:50756616 5'GT 50756616 Upstream 78bp
chr1 17657561 17657561 1 + G T UCEC 17657559 + 17657539 17657579 41 TCCAGCCAAGAAGAAATCCACAGGTTCCTCCACATGGCCCC TCCAGCCAAGAAGAAATCCACATGTTCCTCCACATGGCCCC < 41bp 0.793844297473751 0.434726809357731 0.84196305 0.092193395 prediction 0.587688594947501 Functional Loss - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17657559 chr1:17657561 nonsynonymous SNV 0.013 3 23 hm5C_associated_SNPs_55584 0 0 0 0 2 PADI4 chr1:17657464 3'AG 17657464 Downstream 98bp
chr1 17657561 17657561 1 + G T UCEC 17657559 + 17657539 17657579 41 TCCAGCCAAGAAGAAATCCACAGGTTCCTCCACATGGCCCC TCCAGCCAAGAAGAAATCCACATGTTCCTCCACATGGCCCC < 41bp 0.793844297473751 0.434726809357731 0.84196305 0.092193395 prediction 0.587688594947501 Functional Loss - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17657559 chr1:17657561 nonsynonymous SNV 0.013 3 23 hm5C_associated_SNPs_55584 0 0 0 0 2 PADI4 chr1:17657644 5'GT 17657644 Upstream 84bp
chr19 49869088 49869088 1 + G T KIRC 49869085 + 49869065 49869105 41 ACAGGAGAGGTGCTGATCTCCGAGAATGTGGTGGCATCCAT ACAGGAGAGGTGCTGATCTCCGATAATGTGGTGGCATCCAT < 41bp 0.886300103333058 0.592463825017658 0.42312455 0.24333689 prediction 0.587672556630801 Functional Loss - DKKL1 ENSG00000104901 CDS Human protein_coding chr19:49869085 chr19:49869088 nonsynonymous SNV 0.473 1 24 hm5C_associated_SNPs_55585 0 0 0 0 2 DKKL1 chr19:49869050 3'AG 49869050 Downstream 39bp
chr19 49869088 49869088 1 + G T KIRC 49869085 + 49869065 49869105 41 ACAGGAGAGGTGCTGATCTCCGAGAATGTGGTGGCATCCAT ACAGGAGAGGTGCTGATCTCCGATAATGTGGTGGCATCCAT < 41bp 0.886300103333058 0.592463825017658 0.42312455 0.24333689 prediction 0.587672556630801 Functional Loss - DKKL1 ENSG00000104901 CDS Human protein_coding chr19:49869085 chr19:49869088 nonsynonymous SNV 0.473 1 24 hm5C_associated_SNPs_55585 0 0 0 0 2 DKKL1 chr19:49869142 5'GT 49869142 Upstream 55bp
chr12 57905604 57905604 1 + G T UCEC 57905601 + 57905581 57905621 41 TCAAGCCACGCTGCATAACCCGAGACCTCAAATGGGGAACC TCAAGCCACGCTGCATAACCCGATACCTCAAATGGGGAACC < 41bp 0.793822994393122 0.441224074102965 0.9187781 0.8171277 prediction 0.587645988786245 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57905601 chr12:57905604 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_55587 0 0 1 0 1 MARS chr12:57905651 5'GT 57905651 Upstream 48bp
chr7 141722156 141722156 1 + G T LUSC 141722153 + 141722133 141722173 41 CTAGCACTAACGTGTATGGCCTGGGAGAGCATGTGCACCAG CTAGCACTAACGTGTATGGCCTGTGAGAGCATGTGCACCAG < 41bp 0.793803106464794 0.415923123667792 0.5115652 0.05181715 prediction 0.587606212929587 Functional Loss - MGAM ENSG00000257335 CDS Human protein_coding chr7:141722153 chr7:141722156 stopgain 0.990 1 24 hm5C_associated_SNPs_55589 0 0 0 0 2 MGAM chr7:141722068 3'AG 141722068 Downstream 89bp
chr7 141722156 141722156 1 + G T LUSC 141722153 + 141722133 141722173 41 CTAGCACTAACGTGTATGGCCTGGGAGAGCATGTGCACCAG CTAGCACTAACGTGTATGGCCTGTGAGAGCATGTGCACCAG < 41bp 0.793803106464794 0.415923123667792 0.5115652 0.05181715 prediction 0.587606212929587 Functional Loss - MGAM ENSG00000257335 CDS Human protein_coding chr7:141722153 chr7:141722156 stopgain 0.990 1 24 hm5C_associated_SNPs_55589 0 0 0 0 2 MGAM chr7:141722239 5'GT 141722239 Upstream 84bp
chr4 128804445 128804445 1 + G T LUAD 128804442 + 128804422 128804462 41 TAAGAAAGCCATGTACAAAGCAGGAATGGTACAGAGAGTCC TAAGAAAGCCATGTACAAAGCAGTAATGGTACAGAGAGTCC < 41bp 0.793797803806025 0.438659429858314 0.29696405 0.44657454 prediction 0.587595607612049 Functional Loss - PLK4 ENSG00000142731 CDS Human protein_coding chr4:128804442 chr4:128804445 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55590 0 0 1 0 2 PLK4 chr4:128804417 3'AG 128804417 Downstream 29bp
chr4 128804445 128804445 1 + G T LUAD 128804442 + 128804422 128804462 41 TAAGAAAGCCATGTACAAAGCAGGAATGGTACAGAGAGTCC TAAGAAAGCCATGTACAAAGCAGTAATGGTACAGAGAGTCC < 41bp 0.793797803806025 0.438659429858314 0.29696405 0.44657454 prediction 0.587595607612049 Functional Loss - PLK4 ENSG00000142731 CDS Human protein_coding chr4:128804442 chr4:128804445 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55590 0 0 1 0 2 PLK4 chr4:128804512 5'GT 128804512 Upstream 68bp
chr9 72874100 72874100 1 + G T SARC 72874098 + 72874078 72874118 41 CCCGAGCAAGAGGAAGAATTCGGCCCCGCAGCTGCCGCTGT CCCGAGCAAGAGGAAGAATTCGTCCCCGCAGCTGCCGCTGT < 41bp 0.845956411228914 0.55216227264157 0.9194293 0.55180126 prediction 0.587588277174688 Functional Loss - SMC5 ENSG00000198887 CDS Human protein_coding chr9:72874098 chr9:72874100 nonsynonymous SNV 0.053 0 23 hm5C_associated_SNPs_55591 0 0 1 0 1 SMC5 chr9:72874179 5'GT 72874179 Upstream 80bp
chr20 30037912 30037912 1 + A T BLCA 30037908 + 30037888 30037928 41 AAGGAAAGAGTCTATGTTTACTGCATAAATAATAAAATGTG AAGGAAAGAGTCTATGTTTACTGCTTAAATAATAAAATGTG < 41bp 0.793777037956972 0.491372449877471 0.21928245 0.16609868 prediction 0.587554075913944 Functional Loss - DEFB123 ENSG00000180424 CDS Human protein_coding chr20:30037908 chr20:30037912 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_55593 0 0 0 0 1 DEFB123 chr20:30037832 3'AG 30037832 Downstream 81bp
chr18 59217256 59217256 1 + A C SKCM 59217252 + 59217232 59217272 41 CCAGGAGGTCTGGTTTCCGGCAGCAGGAGCAGAGTGTCTTT CCAGGAGGTCTGGTTTCCGGCAGCCGGAGCAGAGTGTCTTT < 41bp 0.793770848582122 0.38968404843673 0.7799574 0.6938807 prediction 0.587541697164244 Functional Loss - CDH20 ENSG00000101542 CDS Human protein_coding chr18:59217252 chr18:59217256 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_55594 0 0 0 0 1 CDH20 chr18:59217211 3'AG 59217211 Downstream 46bp
chr17 79206292 79206292 1 - T G MESO 79206296 - 79206276 79206316 41 TCGGCAGGCGAAGCCTTCCTCTCCACCATCCAGAAGGCCGC TCGGCAGGCGAAGCCTTCCTCTCCCCCATCCAGAAGGCCGC < 41bp 0.793743411717815 0.386145713123801 0.9258166 0.45532015 prediction 0.587486823435631 Functional Loss - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79206296 chr17:79206292 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_55598 0 0 0 0 1 TEPSIN chr17:79206318 3'AG 79206318 Downstream 27bp
chr3 134920362 134920362 1 + G T UCEC 134920360 + 134920340 134920380 41 ATCCAGCTTGTGGGTATGCTCAGGGGCATCGCTGCTGGCAT ATCCAGCTTGTGGGTATGCTCATGGGCATCGCTGCTGGCAT < 41bp 0.845922367734825 0.552185790682561 0.95020777 0.89997566 prediction 0.587473154104527 Functional Loss - EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134920360 chr3:134920362 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_55600 0 0 0 0 1 EPHB1 chr3:134920316 3'AG 134920316 Downstream 47bp
chrX 49104972 49104972 1 + G T GBM 49104970 + 49104950 49104990 41 ACCGCCACCTCCGAAAGCTGCAGGATTGCAGAGAGGTAAGC ACCGCCACCTCCGAAAGCTGCATGATTGCAGAGAGGTAAGC < 41bp 0.79373290709124 0.457281253720423 0.62296546 0.29462105 prediction 0.587465814182479 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49104970 chrX:49104972 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_55601 0 0 0 0 1 CCDC22 chrX:49104984 5'GT 49104984 Upstream 13bp
chr9 115580039 115580039 1 + G T UCEC 115580036 + 115580016 115580056 41 ATTCTGTTCGTCGAAGATACCAGGATTTTGACTGGTTGAGG ATTCTGTTCGTCGAAGATACCAGTATTTTGACTGGTTGAGG < 41bp 0.887866849544413 0.594140853203049 0.82950205 0.29680628 prediction 0.587451992682726 Functional Loss - SNX30 ENSG00000148158 CDS Human protein_coding chr9:115580036 chr9:115580039 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55602 0 0 1 0 1 SNX30 chr9:115580095 5'GT 115580095 Upstream 57bp
chr1 26607370 26607370 1 + G T UCEC 26607368 + 26607348 26607388 41 GGATGAGATGCGAGCCTTGGCAGGCAACCCCAAGGCCACCC GGATGAGATGCGAGCCTTGGCATGCAACCCCAAGGCCACCC < 41bp 0.851144429424114 0.557435351515175 0.90307164 0.28543466 prediction 0.587418155817877 Functional Loss - SH3BGRL3 ENSG00000142669 CDS Human protein_coding chr1:26607368 chr1:26607370 nonsynonymous SNV 0.958 4 23 hm5C_associated_SNPs_55608 0 0 1 0 1 SH3BGRL3 chr1:26607423 5'GT 26607423 Upstream 54bp
chr14 20824773 20824773 1 + G T UCEC 20824770 + 20824750 20824790 41 ATGCTTCTATGGCATGGTTCCAGGATGAGTAACTGGGTGGG ATGCTTCTATGGCATGGTTCCAGTATGAGTAACTGGGTGGG < 41bp 0.885485880659977 0.591780614350928 0.88745284 0.24682954 prediction 0.587410532618097 Functional Loss - PARP2 ENSG00000129484 CDS Human protein_coding chr14:20824770 chr14:20824773 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_55609 0 0 1 0 2 PARP2 chr14:20824749 3'AG 20824749 Downstream 25bp
chr14 20824773 20824773 1 + G T UCEC 20824770 + 20824750 20824790 41 ATGCTTCTATGGCATGGTTCCAGGATGAGTAACTGGGTGGG ATGCTTCTATGGCATGGTTCCAGTATGAGTAACTGGGTGGG < 41bp 0.885485880659977 0.591780614350928 0.88745284 0.24682954 prediction 0.587410532618097 Functional Loss - PARP2 ENSG00000129484 CDS Human protein_coding chr14:20824770 chr14:20824773 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_55609 0 0 1 0 2 PARP2 chr14:20824848 5'GT 20824848 Upstream 76bp
chr1 156879663 156879663 1 + G T SARC 156879661 + 156879641 156879681 41 CCCCAAACTGGAGCCTGTACCTGCACCCCTGGGTGGCATGG CCCCAAACTGGAGCCTGTACCTTCACCCCTGGGTGGCATGG < 41bp 0.846363688230337 0.552659888618197 0.27387565 0.1919317 prediction 0.587407599224279 Functional Loss - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156879661 chr1:156879663 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_55610 0 0 0 0 1 PEAR1 chr1:156879706 5'GT 156879706 Upstream 44bp
chr7 151046260 151046260 1 + A T PRAD 151046256 + 151046236 151046276 41 CAAGGCAATTGAGCGTGGAACAGGAAATGACAATTATAGAA CAAGGCAATTGAGCGTGGAACAGGTAATGACAATTATAGAA < 41bp 0.795754401311959 0.502080452309255 0.36721462 0.79466844 prediction 0.587347898005409 Functional Loss - NUB1 ENSG00000013374 CDS Human protein_coding chr7:151046256 chr7:151046260 synonymous SNV . 0 25 hm5C_associated_SNPs_55612 0 0 1 1 1 NUB1 chr7:151046326 5'GT 151046326 Upstream 67bp
chr6 150111148 150111148 1 + A T LUAD 150111144 + 150111124 150111164 41 TGCATGAAGGAGCTAAAGCTCTTGATGTAGGATCTGGAAGT TGCATGAAGGAGCTAAAGCTCTTGTTGTAGGATCTGGAAGT < 41bp 0.793662529867596 0.485078167274919 0.09310123 0.107509434 prediction 0.587325059735193 Functional Loss - PCMT1 ENSG00000120265 CDS Human protein_coding chr6:150111144 chr6:150111148 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_55613 0 0 1 0 2 PCMT1 chr6:150111090 3'AG 150111090 Downstream 59bp
chr6 150111148 150111148 1 + A T LUAD 150111144 + 150111124 150111164 41 TGCATGAAGGAGCTAAAGCTCTTGATGTAGGATCTGGAAGT TGCATGAAGGAGCTAAAGCTCTTGTTGTAGGATCTGGAAGT < 41bp 0.793662529867596 0.485078167274919 0.09310123 0.107509434 prediction 0.587325059735193 Functional Loss - PCMT1 ENSG00000120265 CDS Human protein_coding chr6:150111144 chr6:150111148 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_55613 0 0 1 0 2 PCMT1 chr6:150111194 5'GT 150111194 Upstream 47bp
chr19 14028954 14028954 1 + G C LUSC 14028953 + 14028933 14028973 41 TACAAGCTGGCTGCCCTCCACGCCAAGCAGCAGGGAGATAC TACAAGCTGGCTGCCCTCCACCCCAAGCAGCAGGGAGATAC < 41bp 0.807478653906751 0.513832988474874 0.52199477 0.18709475 prediction 0.587291330863753 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14028953 chr19:14028954 nonsynonymous SNV 0.908 3 22 hm5C_associated_SNPs_55616 0 0 1 0 2 CC2D1A chr19:14028883 3'AG 14028883 Downstream 72bp
chr19 14028954 14028954 1 + G C LUSC 14028953 + 14028933 14028973 41 TACAAGCTGGCTGCCCTCCACGCCAAGCAGCAGGGAGATAC TACAAGCTGGCTGCCCTCCACCCCAAGCAGCAGGGAGATAC < 41bp 0.807478653906751 0.513832988474874 0.52199477 0.18709475 prediction 0.587291330863753 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14028953 chr19:14028954 nonsynonymous SNV 0.908 3 22 hm5C_associated_SNPs_55616 0 0 1 0 2 CC2D1A chr19:14029007 5'GT 14029007 Upstream 54bp
chr2 202131427 202131427 1 + A C COAD 202131423 + 202131403 202131443 41 TGCTCTTCCGAATTAATAGACTGGATTTGCTGATTACCTAC TGCTCTTCCGAATTAATAGACTGGCTTTGCTGATTACCTAC < 41bp 0.793635727654493 0.453995114589859 0.5015849 0.28242046 prediction 0.587271455308985 Functional Loss - CASP8 ENSG00000064012 CDS Human protein_coding chr2:202131423 chr2:202131427 nonsynonymous SNV 0.057 4 25 hm5C_associated_SNPs_55617 0 0 1 1 1 CASP8 chr2:202131514 5'GT 202131514 Upstream 88bp
chr2 71206924 71206924 1 + G T UCEC 71206922 + 71206902 71206942 41 CCCCTGCACCTCGTCATCCACAGGGACAACACCACCGTGGC CCCCTGCACCTCGTCATCCACATGGACAACACCACCGTGGC < 41bp 0.861374846368924 0.567742636350607 0.937091 0.19589451 prediction 0.587264420036636 Functional Loss - ANKRD53 ENSG00000144031 CDS Human protein_coding chr2:71206922 chr2:71206924 nonsynonymous SNV 0.014 1 23 hm5C_associated_SNPs_55618 0 0 0 0 1 ANKRD53 chr2:71206990 5'GT 71206990 Upstream 67bp
chr17 40725136 40725136 1 - T G THCA 40725140 - 40725120 40725160 41 CTTGAAGGATACCCCAAGAGCAAGAAGCAGTTCTTTGTAAG CTTGAAGGATACCCCAAGAGCAAGCAGCAGTTCTTTGTAAG < 41bp 0.793624711651313 0.404585991085424 0.7596314 0.3692853 prediction 0.587249423302627 Functional Loss - PSMC3IP ENSG00000131470 CDS Human protein_coding chr17:40725140 chr17:40725136 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_55620 0 0 1 0 2 PSMC3IP chr17:40725125 5'GT 40725125 Upstream 12bp
chr17 40725136 40725136 1 - T G THCA 40725140 - 40725120 40725160 41 CTTGAAGGATACCCCAAGAGCAAGAAGCAGTTCTTTGTAAG CTTGAAGGATACCCCAAGAGCAAGCAGCAGTTCTTTGTAAG < 41bp 0.793624711651313 0.404585991085424 0.7596314 0.3692853 prediction 0.587249423302627 Functional Loss - PSMC3IP ENSG00000131470 CDS Human protein_coding chr17:40725140 chr17:40725136 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_55620 0 0 1 0 2 PSMC3IP chr17:40725184 3'AG 40725184 Downstream 49bp
chr3 101572000 101572000 1 + G T LUAD 101571998 + 101571978 101572018 41 TTCATCTCAATGAACCCAAACAGGAGAGCAGTGCTGATCTG TTCATCTCAATGAACCCAAACATGAGAGCAGTGCTGATCTG < 41bp 0.830783233213533 0.537196116123383 0.6908367 0.10218716 prediction 0.587174234180301 Functional Loss - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101571998 chr3:101572000 nonsynonymous SNV 0.101 0 23 hm5C_associated_SNPs_55626 0 0 1 0 2 NFKBIZ chr3:101571935 3'AG 101571935 Downstream 66bp
chr3 101572000 101572000 1 + G T LUAD 101571998 + 101571978 101572018 41 TTCATCTCAATGAACCCAAACAGGAGAGCAGTGCTGATCTG TTCATCTCAATGAACCCAAACATGAGAGCAGTGCTGATCTG < 41bp 0.830783233213533 0.537196116123383 0.6908367 0.10218716 prediction 0.587174234180301 Functional Loss - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101571998 chr3:101572000 nonsynonymous SNV 0.101 0 23 hm5C_associated_SNPs_55626 0 0 1 0 2 NFKBIZ chr3:101572078 5'GT 101572078 Upstream 79bp
chr17 18286157 18286157 1 + G T LUAD 18286155 + 18286135 18286175 41 GGCAGGATGCCGCCACCATCCGGAGCCAATACCGAGACCTA GGCAGGATGCCGCCACCATCCGTAGCCAATACCGAGACCTA < 41bp 0.860008250358673 0.566440409534371 0.9125567 0.20239767 prediction 0.587135681648604 Functional Loss - EVPLL ENSG00000214860 CDS Human protein_coding chr17:18286155 chr17:18286157 stopgain 0.195 0 23 hm5C_associated_SNPs_55628 0 0 0 0 2 EVPLL chr17:18286140 3'AG 18286140 Downstream 18bp
chr17 18286157 18286157 1 + G T LUAD 18286155 + 18286135 18286175 41 GGCAGGATGCCGCCACCATCCGGAGCCAATACCGAGACCTA GGCAGGATGCCGCCACCATCCGTAGCCAATACCGAGACCTA < 41bp 0.860008250358673 0.566440409534371 0.9125567 0.20239767 prediction 0.587135681648604 Functional Loss - EVPLL ENSG00000214860 CDS Human protein_coding chr17:18286155 chr17:18286157 stopgain 0.195 0 23 hm5C_associated_SNPs_55628 0 0 0 0 2 EVPLL chr17:18286178 5'GT 18286178 Upstream 22bp
chr1 65142667 65142667 1 + G T UCEC 65142665 + 65142645 65142685 41 GCTCTTCACCAGTGTGTCAACAGCAGGTGCAGTCAGAGGCT GCTCTTCACCAGTGTGTCAACATCAGGTGCAGTCAGAGGCT < 41bp 0.793536435708508 0.472275240742753 0.27339363 0.1554865 prediction 0.587072871417016 Functional Loss - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65142665 chr1:65142667 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_55631 0 0 1 0 2 CACHD1 chr1:65142578 3'AG 65142578 Downstream 90bp
chr1 65142667 65142667 1 + G T UCEC 65142665 + 65142645 65142685 41 GCTCTTCACCAGTGTGTCAACAGCAGGTGCAGTCAGAGGCT GCTCTTCACCAGTGTGTCAACATCAGGTGCAGTCAGAGGCT < 41bp 0.793536435708508 0.472275240742753 0.27339363 0.1554865 prediction 0.587072871417016 Functional Loss - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65142665 chr1:65142667 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_55631 0 0 1 0 2 CACHD1 chr1:65142694 5'GT 65142694 Upstream 28bp
chr4 119621735 119621735 1 + G T SARC 119621733 + 119621713 119621753 41 GTTAGAAATTGATGAGATTGCAGCACCTCGATCATTTATTT GTTAGAAATTGATGAGATTGCATCACCTCGATCATTTATTT < 41bp 0.824332251964756 0.530807046028339 0.18672135 0.0484657 prediction 0.587050411872834 Functional Loss - METTL14 ENSG00000145388 CDS Human protein_coding chr4:119621733 chr4:119621735 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_55634 0 0 1 0 2 METTL14 chr4:119621705 3'AG 119621705 Downstream 31bp
chr4 119621735 119621735 1 + G T SARC 119621733 + 119621713 119621753 41 GTTAGAAATTGATGAGATTGCAGCACCTCGATCATTTATTT GTTAGAAATTGATGAGATTGCATCACCTCGATCATTTATTT < 41bp 0.824332251964756 0.530807046028339 0.18672135 0.0484657 prediction 0.587050411872834 Functional Loss - METTL14 ENSG00000145388 CDS Human protein_coding chr4:119621733 chr4:119621735 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_55634 0 0 1 0 2 METTL14 chr4:119621797 5'GT 119621797 Upstream 63bp
chr19 49713507 49713507 1 + G T SARC 49713505 + 49713485 49713525 41 CAGGGCAACAGCGATCTCTACTGGAAGGCGCAGCGTTACCG CAGGGCAACAGCGATCTCTACTTGAAGGCGCAGCGTTACCG < 41bp 0.793515155764125 0.463632290763883 0.4176848 0.063694715 prediction 0.587030311528249 Functional Loss - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49713505 chr19:49713507 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_55637 0 0 0 0 1 TRPM4 chr19:49713466 3'AG 49713466 Downstream 42bp
chr6 97052718 97052718 1 + G T COAD 97052715 + 97052695 97052735 41 GTGGAAAAGCCTTTTGCTGCCAAGGATGAGCGCCTGCTGTG GTGGAAAAGCCTTTTGCTGCCAATGATGAGCGCCTGCTGTG < 41bp 0.887479747544675 0.59399364505165 0.679613 0.22350839 prediction 0.58697220498605 Functional Loss - FHL5 ENSG00000112214 CDS Human protein_coding chr6:97052715 chr6:97052718 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_55642 0 0 0 0 2 FHL5 chr6:97052626 3'AG 97052626 Downstream 93bp
chr6 97052718 97052718 1 + G T COAD 97052715 + 97052695 97052735 41 GTGGAAAAGCCTTTTGCTGCCAAGGATGAGCGCCTGCTGTG GTGGAAAAGCCTTTTGCTGCCAATGATGAGCGCCTGCTGTG < 41bp 0.887479747544675 0.59399364505165 0.679613 0.22350839 prediction 0.58697220498605 Functional Loss - FHL5 ENSG00000112214 CDS Human protein_coding chr6:97052715 chr6:97052718 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_55642 0 0 0 0 2 FHL5 chr6:97052800 5'GT 97052800 Upstream 83bp
chr1 45479664 45479664 1 + G T UCEC 45479662 + 45479642 45479682 41 GCTGGCTCTATCAGAGACCTCAGGCTAGTCACCAGCTGCTT GCTGGCTCTATCAGAGACCTCATGCTAGTCACCAGCTGCTT < 41bp 0.793466622471549 0.464244456036605 0.77763814 0.117669165 prediction 0.586933244943098 Functional Loss - UROD ENSG00000126088 CDS Human protein_coding chr1:45479662 chr1:45479664 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_55644 0 0 1 0 2 UROD chr1:45479581 3'AG 45479581 Downstream 84bp
chr1 45479664 45479664 1 + G T UCEC 45479662 + 45479642 45479682 41 GCTGGCTCTATCAGAGACCTCAGGCTAGTCACCAGCTGCTT GCTGGCTCTATCAGAGACCTCATGCTAGTCACCAGCTGCTT < 41bp 0.793466622471549 0.464244456036605 0.77763814 0.117669165 prediction 0.586933244943098 Functional Loss - UROD ENSG00000126088 CDS Human protein_coding chr1:45479662 chr1:45479664 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_55644 0 0 1 0 2 UROD chr1:45479742 5'GT 45479742 Upstream 79bp
chr12 32520635 32520635 1 + A T LUSC 32520631 + 32520611 32520651 41 GCAGCCTGCTGCCTCCGTACCGCCACAGTGCTCACAACTAG GCAGCCTGCTGCCTCCGTACCGCCTCAGTGCTCACAACTAG < 41bp 0.793455743493603 0.457385255165956 0.29879922 0.08129427 prediction 0.586911486987205 Functional Loss - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32520631 chr12:32520635 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_55647 0 0 0 0 2 BICD1 chr12:32520604 3'AG 32520604 Downstream 32bp
chr12 32520635 32520635 1 + A T LUSC 32520631 + 32520611 32520651 41 GCAGCCTGCTGCCTCCGTACCGCCACAGTGCTCACAACTAG GCAGCCTGCTGCCTCCGTACCGCCTCAGTGCTCACAACTAG < 41bp 0.793455743493603 0.457385255165956 0.29879922 0.08129427 prediction 0.586911486987205 Functional Loss - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32520631 chr12:32520635 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_55647 0 0 0 0 2 BICD1 chr12:32520679 5'GT 32520679 Upstream 45bp
chr10 129350786 129350786 1 + G T OV 129350783 + 129350763 129350803 41 AGCTGCCCAACCAGATTGGACAGGAGCAAAGAACTAGCTTT AGCTGCCCAACCAGATTGGACAGTAGCAAAGAACTAGCTTT < 41bp 0.886331607712538 0.592875986425957 0.5183326 0.18199116 prediction 0.586911242573162 Functional Loss - NPS ENSG00000214285 CDS Human protein_coding chr10:129350783 chr10:129350786 nonsynonymous SNV 0.106 0 24 hm5C_associated_SNPs_55648 0 0 0 0 1 NPS chr10:129350724 3'AG 129350724 Downstream 63bp
chrX 601573 601573 1 + G T LUSC 601570 + 601550 601590 41 CCCAAGGTTTGGTTCCAGAACCGGAGAGCCAAGTGCCGCAA CCCAAGGTTTGGTTCCAGAACCGTAGAGCCAAGTGCCGCAA < 41bp 0.793454690133885 0.410001432048089 0.8956747 0.23833418 prediction 0.58690938026777 Functional Loss - SHOX ENSG00000185960 CDS Human protein_coding chrX:601570 chrX:601573 synonymous SNV . 0 24 hm5C_associated_SNPs_55649 0 0 0 0 2 SHOX chrX:601556 3'AG 601556 Downstream 18bp
chrX 601573 601573 1 + G T LUSC 601570 + 601550 601590 41 CCCAAGGTTTGGTTCCAGAACCGGAGAGCCAAGTGCCGCAA CCCAAGGTTTGGTTCCAGAACCGTAGAGCCAAGTGCCGCAA < 41bp 0.793454690133885 0.410001432048089 0.8956747 0.23833418 prediction 0.58690938026777 Functional Loss - SHOX ENSG00000185960 CDS Human protein_coding chrX:601570 chrX:601573 synonymous SNV . 0 24 hm5C_associated_SNPs_55649 0 0 0 0 2 SHOX chrX:601613 5'GT 601613 Upstream 41bp
chr1 8399633 8399633 1 + G C BLCA 8399632 + 8399612 8399652 41 CTCGCCTTCGGCCTGGGGACCGGGCTTGCCACCCTCTCCAG CTCGCCTTCGGCCTGGGGACCCGGCTTGCCACCCTCTCCAG < 41bp 0.79343809383536 0.48780877329381 0.9289094 0.6812644 prediction 0.586876187670721 Functional Loss - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8399632 chr1:8399633 nonsynonymous SNV 0.137 5 22 hm5C_associated_SNPs_55652 0 0 0 0 1 SLC45A1 chr1:8399553 3'AG 8399553 Downstream 81bp
chr1 79116312 79116312 1 + G T LUAD 79116310 + 79116290 79116330 41 AAAATTGTACTATCTCTATTCAGGATTATGAAGTTTTTCGA AAAATTGTACTATCTCTATTCATGATTATGAAGTTTTTCGA < 41bp 0.793424256314129 0.490386830998758 0.92808425 0.09375098 prediction 0.586848512628259 Functional Loss - IFI44 ENSG00000137965 CDS Human protein_coding chr1:79116310 chr1:79116312 nonsynonymous SNV 0.823 1 23 hm5C_associated_SNPs_55655 0 0 0 0 1 IFI44 chr1:79116337 5'GT 79116337 Upstream 26bp
chr1 156893758 156893758 1 + G T rs529320198 156893756 + 156893736 156893776 41 CGCAGAGGAGTACCAGTGCTCCGGGGTCCTCGAGACCGACT CGCAGAGGAGTACCAGTGCTCCTGGGTCCTCGAGACCGACT < 41bp 0.84307221095177 0.549665078446355 0.9291466 0.69421446 prediction 0.58681426501083 Functional Loss - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156893756 chr1:156893758 nonsynonymous SNV 0.426 4 23 hm5C_associated_SNPs_55657 0 0 0 0 1 LRRC71 chr1:156893741 3'AG 156893741 Downstream 18bp
chr20 35812693 35812693 1 + G T OV 35812690 + 35812670 35812710 41 TGGAGAGACTAAAAGCCTCGCTGGATCGCCCTTTCACAAAT TGGAGAGACTAAAAGCCTCGCTGTATCGCCCTTTCACAAAT < 41bp 0.887377315478345 0.593980613422515 0.037782013 0.011879951 prediction 0.586793404111659 Functional Loss - RPN2 ENSG00000118705 CDS Human protein_coding chr20:35812690 chr20:35812693 nonsynonymous SNV 0.985 1 24 hm5C_associated_SNPs_55658 0 0 1 0 1 RPN2 chr20:35812776 5'GT 35812776 Upstream 84bp
chr20 13140725 13140725 1 + A C STAD 13140721 + 13140701 13140741 41 ATTTCCAGCCACTCCCCTCGCAGAAGCTCGGGCTCGGTTTT ATTTCCAGCCACTCCCCTCGCAGACGCTCGGGCTCGGTTTT < 41bp 0.793366191534237 0.398571615882109 0.8361112 0.7559615 prediction 0.586732383068474 Functional Loss - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13140721 chr20:13140725 nonsynonymous SNV 0.974 3 25 hm5C_associated_SNPs_55664 0 0 0 0 2 SPTLC3 chr20:13140650 3'AG 13140650 Downstream 76bp
chr20 13140725 13140725 1 + A C STAD 13140721 + 13140701 13140741 41 ATTTCCAGCCACTCCCCTCGCAGAAGCTCGGGCTCGGTTTT ATTTCCAGCCACTCCCCTCGCAGACGCTCGGGCTCGGTTTT < 41bp 0.793366191534237 0.398571615882109 0.8361112 0.7559615 prediction 0.586732383068474 Functional Loss - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13140721 chr20:13140725 nonsynonymous SNV 0.974 3 25 hm5C_associated_SNPs_55664 0 0 0 0 2 SPTLC3 chr20:13140779 5'GT 13140779 Upstream 55bp
chr15 39875873 39875873 1 + G T UCEC 39875871 + 39875851 39875891 41 ACCACACCAGAAGACATCCTCAGGAACAAAGGCTGCTCCAG ACCACACCAGAAGACATCCTCATGAACAAAGGCTGCTCCAG < 41bp 0.854965385291644 0.561614480501382 0.92861533 0.13456401 prediction 0.586701809580525 Functional Loss - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39875871 chr15:39875873 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_55666 0 0 1 0 2 THBS1 chr15:39875818 3'AG 39875818 Downstream 56bp
chr15 39875873 39875873 1 + G T UCEC 39875871 + 39875851 39875891 41 ACCACACCAGAAGACATCCTCAGGAACAAAGGCTGCTCCAG ACCACACCAGAAGACATCCTCATGAACAAAGGCTGCTCCAG < 41bp 0.854965385291644 0.561614480501382 0.92861533 0.13456401 prediction 0.586701809580525 Functional Loss - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39875871 chr15:39875873 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_55666 0 0 1 0 2 THBS1 chr15:39875893 5'GT 39875893 Upstream 21bp
chr15 42116252 42116252 1 + G T UCEC 42116250 + 42116230 42116270 41 AGCCAGGGGCAGCCCTGAGCCAGGACTCAGGTGTGCACAGC AGCCAGGGGCAGCCCTGAGCCATGACTCAGGTGTGCACAGC < 41bp 0.835331982719712 0.541990565023703 0.8947786 0.10041836 prediction 0.586682835392018 Functional Loss - MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42116250 chr15:42116252 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_55667 0 0 0 0 1 MAPKBP1 chr15:42116259 5'GT 42116259 Upstream 8bp
chr11 75511446 75511446 1 + G T UCEC 75511443 + 75511423 75511463 41 AGCTGGAGCACCCAACCCAGCAAGACATCGACCTGTACCAC AGCTGGAGCACCCAACCCAGCAATACATCGACCTGTACCAC < 41bp 0.793297641956221 0.41405999807015 0.7463097 0.3974319 prediction 0.586595283912441 Functional Loss - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75511443 chr11:75511446 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_55671 0 0 1 0 1 DGAT2 chr11:75511399 3'AG 75511399 Downstream 48bp
chr4 83372248 83372248 1 + G T BLCA 83372245 + 83372225 83372265 41 TGTTCCTATCCCTGCAGCATCTGGGAATGGAGTGGATGATC TGTTCCTATCCCTGCAGCATCTGTGAATGGAGTGGATGATC < 41bp 0.890992450690702 0.597714356747395 0.59566665 0.13280421 prediction 0.586556187886613 Functional Loss - ENOPH1 ENSG00000145293 CDS Human protein_coding chr4:83372245 chr4:83372248 nonsynonymous SNV 0.070 1 24 hm5C_associated_SNPs_55673 0 0 1 0 1 ENOPH1 chr4:83372196 3'AG 83372196 Downstream 53bp
chr11 66833451 66833451 1 + G T UCEC 66833449 + 66833429 66833469 41 GCACCTCCACATCTGGGACACAGCAGGTGGGTGTGCAGGGG GCACCTCCACATCTGGGACACATCAGGTGGGTGTGCAGGGG < 41bp 0.840790072471803 0.547533846742944 0.13805884 0.097722024 prediction 0.586512451457719 Functional Loss - RHOD ENSG00000173156 CDS Human protein_coding chr11:66833449 chr11:66833451 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_55674 0 0 0 0 2 RHOD chr11:66833367 3'AG 66833367 Downstream 85bp
chr11 66833451 66833451 1 + G T UCEC 66833449 + 66833429 66833469 41 GCACCTCCACATCTGGGACACAGCAGGTGGGTGTGCAGGGG GCACCTCCACATCTGGGACACATCAGGTGGGTGTGCAGGGG < 41bp 0.840790072471803 0.547533846742944 0.13805884 0.097722024 prediction 0.586512451457719 Functional Loss - RHOD ENSG00000173156 CDS Human protein_coding chr11:66833449 chr11:66833451 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_55674 0 0 0 0 2 RHOD chr11:66833454 5'GT 66833454 Upstream 4bp
chr10 135369308 135369308 1 - C A LUAD 135369310 - 135369290 135369330 41 CTTGATGAGGGACTCTTTCTCCGCAGCCAGGAGGCTGCAGC CTTGATGAGGGACTCTTTCTCCTCAGCCAGGAGGCTGCAGC < 41bp 0.854325506970285 0.561071667847731 0.8642984 0.2879699 prediction 0.586507678245109 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135369310 chr10:135369308 nonsynonymous SNV 0.248 4 23 hm5C_associated_SNPs_55676 0 0 0 0 1 SYCE1 chr10:135369407 3'AG 135369407 Downstream 100bp
chr7 31013752 31013752 1 + G T HNSC 31013749 + 31013729 31013769 41 TGGTGGCTGGTTCTCGCTGGCTGGGGTGAGCACTGAGGGCG TGGTGGCTGGTTCTCGCTGGCTGTGGTGAGCACTGAGGGCG < 41bp 0.88425415549504 0.591002485627389 0.8933146 0.15929657 prediction 0.586503339735304 Functional Loss - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31013749 chr7:31013752 nonsynonymous SNV 0.965 3 24 hm5C_associated_SNPs_55677 0 0 0 0 1 GHRHR chr7:31013753 5'GT 31013753 Upstream 2bp
chr4 1369876 1369876 1 + G T UCEC 1369874 + 1369854 1369894 41 CCCAGAAGCTGGCAGCAGAGCGGGCCCGGGCGCCTGTGGTG CCCAGAAGCTGGCAGCAGAGCGTGCCCGGGCGCCTGTGGTG < 41bp 0.86563502935689 0.572384084178091 0.8623383 0.18680426 prediction 0.586501890357599 Functional Loss - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1369874 chr4:1369876 synonymous SNV . 0 23 hm5C_associated_SNPs_55678 0 0 1 0 2 UVSSA chr4:1369822 3'AG 1369822 Downstream 55bp
chr4 1369876 1369876 1 + G T UCEC 1369874 + 1369854 1369894 41 CCCAGAAGCTGGCAGCAGAGCGGGCCCGGGCGCCTGTGGTG CCCAGAAGCTGGCAGCAGAGCGTGCCCGGGCGCCTGTGGTG < 41bp 0.86563502935689 0.572384084178091 0.8623383 0.18680426 prediction 0.586501890357599 Functional Loss - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1369874 chr4:1369876 synonymous SNV . 0 23 hm5C_associated_SNPs_55678 0 0 1 0 2 UVSSA chr4:1369956 5'GT 1369956 Upstream 81bp
chr22 35480444 35480444 1 + G T UCEC 35480442 + 35480422 35480462 41 TTGGCAACCTGGGGGCTCCACAGCAGCTGAGTGAAGCCAGT TTGGCAACCTGGGGGCTCCACATCAGCTGAGTGAAGCCAGT < 41bp 0.85901731824932 0.565773958079001 0.4671364 0.27687085 prediction 0.586486720340638 Functional Loss - ISX ENSG00000175329 CDS Human protein_coding chr22:35480442 chr22:35480444 nonsynonymous SNV 0.163 2 23 hm5C_associated_SNPs_55679 0 0 0 0 2 ISX chr22:35480376 3'AG 35480376 Downstream 69bp
chr22 35480444 35480444 1 + G T UCEC 35480442 + 35480422 35480462 41 TTGGCAACCTGGGGGCTCCACAGCAGCTGAGTGAAGCCAGT TTGGCAACCTGGGGGCTCCACATCAGCTGAGTGAAGCCAGT < 41bp 0.85901731824932 0.565773958079001 0.4671364 0.27687085 prediction 0.586486720340638 Functional Loss - ISX ENSG00000175329 CDS Human protein_coding chr22:35480442 chr22:35480444 nonsynonymous SNV 0.163 2 23 hm5C_associated_SNPs_55679 0 0 0 0 2 ISX chr22:35480492 5'GT 35480492 Upstream 49bp
chr19 36352122 36352122 1 + G T LUAD 36352120 + 36352100 36352140 41 AGGCTGGGCTATCGGGCCTGCGGGGCGGCGCCGCGGAGGCT AGGCTGGGCTATCGGGCCTGCGTGGCGGCGCCGCGGAGGCT < 41bp 0.863135577872514 0.569906320890966 0.9075698 0.8619765 prediction 0.586458513963094 Functional Loss - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36352120 chr19:36352122 synonymous SNV . 0 23 hm5C_associated_SNPs_55680 0 0 0 0 2 KIRREL2 chr19:36352024 3'AG 36352024 Downstream 99bp
chr19 36352122 36352122 1 + G T LUAD 36352120 + 36352100 36352140 41 AGGCTGGGCTATCGGGCCTGCGGGGCGGCGCCGCGGAGGCT AGGCTGGGCTATCGGGCCTGCGTGGCGGCGCCGCGGAGGCT < 41bp 0.863135577872514 0.569906320890966 0.9075698 0.8619765 prediction 0.586458513963094 Functional Loss - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36352120 chr19:36352122 synonymous SNV . 0 23 hm5C_associated_SNPs_55680 0 0 0 0 2 KIRREL2 chr19:36352156 5'GT 36352156 Upstream 35bp
chr18 76754853 76754853 1 + G T LUAD 76754850 + 76754830 76754870 41 AGCGGAGGCGCCCCTGGCCGCGCGGGCATCAAGGAGGAGGC AGCGGAGGCGCCCCTGGCCGCGCTGGCATCAAGGAGGAGGC < 41bp 0.885185378516054 0.591965927717338 0.5903262 0.1396923 prediction 0.586438901597431 Functional Loss - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76754850 chr18:76754853 synonymous SNV . 0 24 hm5C_associated_SNPs_55681 0 0 0 0 1 SALL3 chr18:76754905 5'GT 76754905 Upstream 53bp
chr11 62545591 62545591 1 + G T SARC 62545589 + 62545569 62545609 41 CCCCAAAGGCTGTGCTGAGACAGCTGTCAGAGGTGGCTGCC CCCCAAAGGCTGTGCTGAGACATCTGTCAGAGGTGGCTGCC < 41bp 0.793190024671791 0.456168126683539 0.49983037 0.19254589 prediction 0.586380049343583 Functional Loss - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62545589 chr11:62545591 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_55684 0 0 1 0 1 TAF6L chr11:62545600 5'GT 62545600 Upstream 10bp
chr22 45221423 45221423 1 + A T rs3209476 45221419 + 45221399 45221439 41 GACGCCGCCTCCCACCAAGACACCACCGCCGCGGCCCCCGC GACGCCGCCTCCCACCAAGACACCTCCGCCGCGGCCCCCGC < 41bp 0.793163223345684 0.457108039465217 0.145082 0.13239214 prediction 0.586326446691367 Functional Loss - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45221419 chr22:45221423 synonymous SNV . 0 25 hm5C_associated_SNPs_55688 0 0 0 0 2 ARHGAP8;PRR5-ARHGAP8 chr22:45221363 3'AG 45221363 Downstream 61bp
chr22 45221423 45221423 1 + A T rs3209476 45221419 + 45221399 45221439 41 GACGCCGCCTCCCACCAAGACACCACCGCCGCGGCCCCCGC GACGCCGCCTCCCACCAAGACACCTCCGCCGCGGCCCCCGC < 41bp 0.793163223345684 0.457108039465217 0.145082 0.13239214 prediction 0.586326446691367 Functional Loss - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45221419 chr22:45221423 synonymous SNV . 0 25 hm5C_associated_SNPs_55688 0 0 0 0 2 ARHGAP8;PRR5-ARHGAP8 chr22:45221473 5'GT 45221473 Upstream 51bp
chr15 43690269 43690269 1 + G T THCA 43690266 + 43690246 43690286 41 TCAGGCAAGAGAAGGGCCTTCTCGGGAAACTTCTCCCCGGG TCAGGCAAGAGAAGGGCCTTCTCTGGAAACTTCTCCCCGGG < 41bp 0.892365716154413 0.599204068954857 0.68771124 0.54409075 prediction 0.58632329439911 Functional Loss - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43690266 chr15:43690269 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_55689 0 0 1 0 2 TUBGCP4 chr15:43690236 3'AG 43690236 Downstream 34bp
chr15 43690269 43690269 1 + G T THCA 43690266 + 43690246 43690286 41 TCAGGCAAGAGAAGGGCCTTCTCGGGAAACTTCTCCCCGGG TCAGGCAAGAGAAGGGCCTTCTCTGGAAACTTCTCCCCGGG < 41bp 0.892365716154413 0.599204068954857 0.68771124 0.54409075 prediction 0.58632329439911 Functional Loss - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43690266 chr15:43690269 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_55689 0 0 1 0 2 TUBGCP4 chr15:43690239 3'AG 43690239 Downstream 31bp
chr22 38046695 38046695 1 - C A rs12170939 38046698 - 38046678 38046718 41 TGCTGAAGCCAAGGCTGGGGCCGGAGCTGGAGCTGGAGCCG TGCTGAAGCCAAGGCTGGGGCCGTAGCTGGAGCTGGAGCCG < 41bp 0.885910895694836 0.592753940936762 0.8113488 0.5099908 prediction 0.586313909516148 Functional Loss - SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38046698 chr22:38046695 nonsynonymous SNV 0.024 1 24 hm5C_associated_SNPs_55690 0 0 0 0 1 SH3BP1 chr22:38046719 3'AG 38046719 Downstream 25bp
chr2 10563183 10563183 1 + G T CESC 10563180 + 10563160 10563200 41 ACCCCGGAGAAGCGCACAGACAAGATCTTCAGGCAGATGGA ACCCCGGAGAAGCGCACAGACAATATCTTCAGGCAGATGGA < 41bp 0.793155502239963 0.41701568698141 0.026054412 0.009260595 prediction 0.586311004479926 Functional Loss - HPCAL1 ENSG00000115756 CDS Human protein_coding chr2:10563180 chr2:10563183 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_55692 0 0 1 0 2 HPCAL1 chr2:10563109 3'AG 10563109 Downstream 75bp
chr2 10563183 10563183 1 + G T CESC 10563180 + 10563160 10563200 41 ACCCCGGAGAAGCGCACAGACAAGATCTTCAGGCAGATGGA ACCCCGGAGAAGCGCACAGACAATATCTTCAGGCAGATGGA < 41bp 0.793155502239963 0.41701568698141 0.026054412 0.009260595 prediction 0.586311004479926 Functional Loss - HPCAL1 ENSG00000115756 CDS Human protein_coding chr2:10563180 chr2:10563183 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_55692 0 0 1 0 2 HPCAL1 chr2:10563214 5'GT 10563214 Upstream 32bp
chr10 99343382 99343382 1 + G T TGCT 99343379 + 99343359 99343399 41 GCAGCTCTGGCAGGCTGATACCCGGCACGCCCTGGAGCATC GCAGCTCTGGCAGGCTGATACCCTGCACGCCCTGGAGCATC < 41bp 0.793113735157411 0.404619469854656 0.13126558 0.016018093 prediction 0.586227470314822 Functional Loss - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99343379 chr10:99343382 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_55698 0 0 0 0 1 ANKRD2 chr10:99343333 3'AG 99343333 Downstream 50bp
chr4 39233852 39233852 1 + A T UCEC 39233848 + 39233828 39233868 41 CCAACGATTATAACCTGGCTCAGGACTTGTACCTTGCATCC CCAACGATTATAACCTGGCTCAGGTCTTGTACCTTGCATCC < 41bp 0.812906007380183 0.519807956501428 0.76100487 0.3725917 prediction 0.586196101757511 Functional Loss - WDR19 ENSG00000157796 CDS Human protein_coding chr4:39233848 chr4:39233852 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_55700 0 0 0 0 2 WDR19 chr4:39233782 3'AG 39233782 Downstream 71bp
chr4 39233852 39233852 1 + A T UCEC 39233848 + 39233828 39233868 41 CCAACGATTATAACCTGGCTCAGGACTTGTACCTTGCATCC CCAACGATTATAACCTGGCTCAGGTCTTGTACCTTGCATCC < 41bp 0.812906007380183 0.519807956501428 0.76100487 0.3725917 prediction 0.586196101757511 Functional Loss - WDR19 ENSG00000157796 CDS Human protein_coding chr4:39233848 chr4:39233852 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_55700 0 0 0 0 2 WDR19 chr4:39233892 5'GT 39233892 Upstream 41bp
chr12 69127282 69127282 1 + G T UCEC 69127279 + 69127259 69127299 41 AAGTATTTGTGAAAATTCCTCAGGATTCTATAGCAGAAATC AAGTATTTGTGAAAATTCCTCAGTATTCTATAGCAGAAATC < 41bp 0.793082023708564 0.431681155165386 0.68273175 0.12657335 prediction 0.586164047417127 Functional Loss - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69127279 chr12:69127282 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55702 0 0 1 0 1 NUP107 chr12:69127232 3'AG 69127232 Downstream 51bp
chr1 93599699 93599699 1 + G T THCA 93599696 + 93599676 93599716 41 AATACCTCAGATGTGGATTTCACGGGTGCTTCCAGTGCAAA AATACCTCAGATGTGGATTTCACTGGTGCTTCCAGTGCAAA < 41bp 0.793073989921293 0.432159147582754 0.74952245 0.12795061 prediction 0.586147979842586 Functional Loss - MTF2 ENSG00000143033 CDS Human protein_coding chr1:93599696 chr1:93599699 synonymous SNV . 0 24 hm5C_associated_SNPs_55703 0 0 1 0 2 MTF2 chr1:93599648 3'AG 93599648 Downstream 52bp
chr1 93599699 93599699 1 + G T THCA 93599696 + 93599676 93599716 41 AATACCTCAGATGTGGATTTCACGGGTGCTTCCAGTGCAAA AATACCTCAGATGTGGATTTCACTGGTGCTTCCAGTGCAAA < 41bp 0.793073989921293 0.432159147582754 0.74952245 0.12795061 prediction 0.586147979842586 Functional Loss - MTF2 ENSG00000143033 CDS Human protein_coding chr1:93599696 chr1:93599699 synonymous SNV . 0 24 hm5C_associated_SNPs_55703 0 0 1 0 2 MTF2 chr1:93599752 5'GT 93599752 Upstream 54bp
chr16 88925152 88925152 1 + G T UCEC 88925149 + 88925129 88925169 41 ATGGGGAAGGCCCTGGTCGACCAGAGGGAGCTGTACCTGGG ATGGGGAAGGCCCTGGTCGACCATAGGGAGCTGTACCTGGG < 41bp 0.880437261585397 0.587369368968306 0.82548475 0.22548193 prediction 0.586135785234184 Functional Loss - TRAPPC2L ENSG00000167515 CDS Human protein_coding chr16:88925149 chr16:88925152 nonsynonymous SNV 0.992 3 24 hm5C_associated_SNPs_55705 0 0 1 0 2 TRAPPC2L chr16:88925197 5'GT 88925197 Upstream 46bp
chr16 88925152 88925152 1 + G T UCEC 88925149 + 88925129 88925169 41 ATGGGGAAGGCCCTGGTCGACCAGAGGGAGCTGTACCTGGG ATGGGGAAGGCCCTGGTCGACCATAGGGAGCTGTACCTGGG < 41bp 0.880437261585397 0.587369368968306 0.82548475 0.22548193 prediction 0.586135785234184 Functional Loss - TRAPPC2L ENSG00000167515 CDS Human other chr16:88925149 chr16:88925152 nonsynonymous SNV 0.992 3 24 hm5C_associated_SNPs_55705 0 0 1 0 2 TRAPPC2L;TRAPPC2L chr16:88925199 5'GT 88925199 Upstream 48bp
chr10 75673395 75673395 1 + A C LAML 75673391 + 75673371 75673411 41 ATTATTGGGGGAGAATTCACCACCATCGAGAACCAGCCCTG ATTATTGGGGGAGAATTCACCACCCTCGAGAACCAGCCCTG < 41bp 0.911951906174892 0.618900042686953 0.2260468 0.2500856 prediction 0.586103726975876 Functional Loss - PLAU ENSG00000122861 CDS Human protein_coding chr10:75673391 chr10:75673395 nonsynonymous SNV 0.906 1 25 hm5C_associated_SNPs_55707 0 0 0 0 1 PLAU chr10:75673297 3'AG 75673297 Downstream 99bp
chr6 40347037 40347037 1 + G T UCEC 40347035 + 40347015 40347055 41 TTATAGGAACGGTCACTGCGCAGGATCAAGCTACAATGAAG TTATAGGAACGGTCACTGCGCATGATCAAGCTACAATGAAG < 41bp 0.811036435816018 0.517987424295365 0.7661543 0.14825493 prediction 0.586098023041307 Functional Loss - TDRG1 ENSG00000204091 ncRNA_exonic Human antisense chr6:40347035 chr6:40347037 . . 0 23 hm5C_associated_SNPs_55708 0 0 0 1 1 TDRG1 chr6:40347021 3'AG 40347021 Downstream 17bp
chr3 122283386 122283386 1 + G T SARC 122283384 + 122283364 122283404 41 CAGAGCTCTAAGTCCTCGGGCGGCGGGGAGTGCACGGTCAG CAGAGCTCTAAGTCCTCGGGCGTCGGGGAGTGCACGGTCAG < 41bp 0.793038444303503 0.455320721439318 0.8770596 0.47571298 prediction 0.586076888607007 Functional Loss - DTX3L ENSG00000163840 CDS Human protein_coding chr3:122283384 chr3:122283386 nonsynonymous SNV 0.075 4 23 hm5C_associated_SNPs_55710 0 0 1 0 1 DTX3L chr3:122283460 5'GT 122283460 Upstream 75bp
chr8 30977861 30977861 1 + G T HNSC 30977858 + 30977838 30977878 41 AGGACATGGAATCATATTATCAGGAGATTGGTAGAGCTGGT AGGACATGGAATCATATTATCAGTAGATTGGTAGAGCTGGT < 41bp 0.793037529898542 0.425345686350668 0.9187075 0.29996967 prediction 0.586075059797084 Functional Loss - WRN ENSG00000165392 CDS Human protein_coding chr8:30977858 chr8:30977861 stopgain 1.000 1 24 hm5C_associated_SNPs_55711 0 0 1 0 1 WRN chr8:30977940 5'GT 30977940 Upstream 80bp
chr12 54422634 54422634 1 + G T HNSC 54422632 + 54422612 54422652 41 GATTTTAGTTCTGAGCAGGGCAGGACTGCGCCCCAGGACCA GATTTTAGTTCTGAGCAGGGCATGACTGCGCCCCAGGACCA < 41bp 0.809825344370059 0.516790090740529 0.5018527 0.17032069 prediction 0.58607050725906 Functional Loss - HOXC6 ENSG00000197757 CDS Human protein_coding chr12:54422632 chr12:54422634 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_55712 0 0 1 0 1 HOXC6 chr12:54422705 5'GT 54422705 Upstream 72bp
chr3 111797679 111797679 1 + G T LIHC 111797676 + 111797656 111797696 41 CACCTACGGGATCATCACTTCTCGGATGCTCTGTGCAGGCA CACCTACGGGATCATCACTTCTCTGATGCTCTGTGCAGGCA < 41bp 0.793024102668497 0.422277061265276 0.37556016 0.18158522 prediction 0.586048205336994 Functional Loss - TMPRSS7 ENSG00000176040 CDS Human protein_coding chr3:111797676 chr3:111797679 nonsynonymous SNV 0.985 5 24 hm5C_associated_SNPs_55715 0 0 0 0 2 TMPRSS7 chr3:111797589 3'AG 111797589 Downstream 91bp
chr3 111797679 111797679 1 + G T LIHC 111797676 + 111797656 111797696 41 CACCTACGGGATCATCACTTCTCGGATGCTCTGTGCAGGCA CACCTACGGGATCATCACTTCTCTGATGCTCTGTGCAGGCA < 41bp 0.793024102668497 0.422277061265276 0.37556016 0.18158522 prediction 0.586048205336994 Functional Loss - TMPRSS7 ENSG00000176040 CDS Human protein_coding chr3:111797676 chr3:111797679 nonsynonymous SNV 0.985 5 24 hm5C_associated_SNPs_55715 0 0 0 0 2 TMPRSS7 chr3:111797725 5'GT 111797725 Upstream 47bp
chr16 20787371 20787371 1 + G T PRAD 20787369 + 20787349 20787389 41 AAATGTGGCCTGTCTGCGAACAGGTTAGTAATGTTTGCTTT AAATGTGGCCTGTCTGCGAACATGTTAGTAATGTTTGCTTT < 41bp 0.792998665288287 0.461902209081599 0.50282055 0.2074764 prediction 0.585997330576575 Functional Loss - ACSM3 ENSG00000005187 CDS Human protein_coding chr16:20787369 chr16:20787371 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_55716 0 0 1 0 1 ACSM3 chr16:20787371 5'GT 20787371 Upstream 1bp
chr10 98064440 98064440 1 + G T BRCA 98064437 + 98064417 98064457 41 CTGGCCCGCAGGAAAGGGTTCAGGGTTGAAAATGAGCTCAG CTGGCCCGCAGGAAAGGGTTCAGTGTTGAAAATGAGCTCAG < 41bp 0.885364711342401 0.592366948220472 0.86926305 0.15947205 prediction 0.585995526243858 Functional Loss - DNTT ENSG00000107447 CDS Human protein_coding chr10:98064437 chr10:98064440 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_55717 0 0 0 0 1 DNTT chr10:98064457 5'GT 98064457 Upstream 18bp
chr11 65780306 65780306 1 + G C LAML 65780305 + 65780285 65780325 41 CTATGCCCCCAGCTGGTGGCCGGCATCAAGTACTTCCTGAC CTATGCCCCCAGCTGGTGGCCCGCATCAAGTACTTCCTGAC < 41bp 0.809228175329472 0.516233642875557 0.6909598 0.24899474 prediction 0.58598906490783 Functional Loss - CST6 ENSG00000175315 CDS Human protein_coding chr11:65780305 chr11:65780306 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_55718 0 0 0 0 1 CST6 chr11:65780297 3'AG 65780297 Downstream 10bp
chrX 37651258 37651258 1 + G T UCEC 37651255 + 37651235 37651275 41 CAACAAGAGTTCGAAGACAACTGGACAGGAATCTCACCTTT CAACAAGAGTTCGAAGACAACTGTACAGGAATCTCACCTTT < 41bp 0.880910566144169 0.587929871785692 0.37555155 0.18490002 prediction 0.585961388716955 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37651255 chrX:37651258 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_55723 0 0 0 4 2 CYBB chrX:37651228 3'AG 37651228 Downstream 31bp
chrX 37651258 37651258 1 + G T UCEC 37651255 + 37651235 37651275 41 CAACAAGAGTTCGAAGACAACTGGACAGGAATCTCACCTTT CAACAAGAGTTCGAAGACAACTGTACAGGAATCTCACCTTT < 41bp 0.880910566144169 0.587929871785692 0.37555155 0.18490002 prediction 0.585961388716955 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37651255 chrX:37651258 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_55723 0 0 0 4 2 CYBB chrX:37651312 5'GT 37651312 Upstream 55bp
chr7 148484124 148484124 1 + A C STAD 148484120 + 148484100 148484140 41 TAGAAGACAAAGACGTATTTCAGAAGTTCTATGCGAAGATG TAGAAGACAAAGACGTATTTCAGACGTTCTATGCGAAGATG < 41bp 0.792953843988642 0.397590244517444 0.16752478 0.20229632 prediction 0.585907687977283 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148484120 chr7:148484124 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_55724 0 0 1 0 2 CUL1 chr7:148484081 3'AG 148484081 Downstream 44bp
chr7 148484124 148484124 1 + A C STAD 148484120 + 148484100 148484140 41 TAGAAGACAAAGACGTATTTCAGAAGTTCTATGCGAAGATG TAGAAGACAAAGACGTATTTCAGACGTTCTATGCGAAGATG < 41bp 0.792953843988642 0.397590244517444 0.16752478 0.20229632 prediction 0.585907687977283 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148484120 chr7:148484124 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_55724 0 0 1 0 2 CUL1 chr7:148484212 5'GT 148484212 Upstream 89bp
chr6 97063553 97063553 1 + A C COAD 97063549 + 97063529 97063569 41 CATAGCGAATGCTTTAACTGCGGGAAATGCTCTGTCTCCTT CATAGCGAATGCTTTAACTGCGGGCAATGCTCTGTCTCCTT < 41bp 0.884861570493788 0.591908081257226 0.5720413 0.52104896 prediction 0.585906978473126 Functional Loss - FHL5 ENSG00000112214 CDS Human protein_coding chr6:97063549 chr6:97063553 nonsynonymous SNV 0.988 1 25 hm5C_associated_SNPs_55725 0 0 0 0 1 FHL5 chr6:97063485 3'AG 97063485 Downstream 69bp
chrX 153050868 153050868 1 + G T UCEC 153050865 + 153050845 153050885 41 TGGAAAAGTACGAGTGGCCCCTAGAGCAGGCCACACAGTTC TGGAAAAGTACGAGTGGCCCCTATAGCAGGCCACACAGTTC < 41bp 0.792926300169138 0.424087933898921 0.026488453 0.01182425 prediction 0.585852600338275 Functional Loss - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153050865 chrX:153050868 stopgain 0.994 1 24 hm5C_associated_SNPs_55728 0 0 0 0 1 SRPK3 chrX:153050791 3'AG 153050791 Downstream 78bp
chr17 65529066 65529066 1 + G T LUAD 65529064 + 65529044 65529084 41 GAGAAGCGGGTGTATCTCAACAGGTGAGTCATGGCAGCCTG GAGAAGCGGGTGTATCTCAACATGTGAGTCATGGCAGCCTG < 41bp 0.845191158537198 0.552280725960982 0.84700024 0.28013086 prediction 0.585820865152431 Functional Loss - PITPNC1 ENSG00000154217 CDS Human protein_coding chr17:65529064 chr17:65529066 nonsynonymous SNV 0.971 4 23 hm5C_associated_SNPs_55731 0 0 0 0 1 PITPNC1 chr17:65529066 5'GT 65529066 Upstream 1bp
chr6 31584147 31584147 1 + G T LUSC 31584144 + 31584124 31584164 41 TCATGTCCCTGAAACGAATGCTGGAGAAACTTGGAGTCCCC TCATGTCCCTGAAACGAATGCTGTAGAAACTTGGAGTCCCC < 41bp 0.818278181139845 0.525396824170939 0.6452117 0.31032467 prediction 0.585762713937812 Functional Loss - AIF1 ENSG00000204472 CDS Human protein_coding chr6:31584144 chr6:31584147 stopgain 1.000 1 24 hm5C_associated_SNPs_55734 0 0 1 0 1 AIF1 chr6:31584121 3'AG 31584121 Downstream 27bp
chr11 62549398 62549398 1 + G T UCEC 62549395 + 62549375 62549415 41 CAGGACTTGCAGACGAACTCCAAGATTGGGGCACTCCTGCC CAGGACTTGCAGACGAACTCCAATATTGGGGCACTCCTGCC < 41bp 0.792878873675299 0.40484403882331 0.034628242 0.047600597 prediction 0.585757747350597 Functional Loss - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62549395 chr11:62549398 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_55735 0 0 0 0 2 TAF6L chr11:62549366 3'AG 62549366 Downstream 33bp
chr11 62549398 62549398 1 + G T UCEC 62549395 + 62549375 62549415 41 CAGGACTTGCAGACGAACTCCAAGATTGGGGCACTCCTGCC CAGGACTTGCAGACGAACTCCAATATTGGGGCACTCCTGCC < 41bp 0.792878873675299 0.40484403882331 0.034628242 0.047600597 prediction 0.585757747350597 Functional Loss - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62549395 chr11:62549398 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_55735 0 0 0 0 2 TAF6L chr11:62549440 5'GT 62549440 Upstream 43bp
chr17 37819139 37819139 1 + G T SARC 37819137 + 37819117 37819157 41 TTTCACCTGCGACAGCGCATCAGCGAGCTGGGGGCCCGGGC TTTCACCTGCGACAGCGCATCATCGAGCTGGGGGCCCGGGC < 41bp 0.836330751086614 0.5434545905171 0.45443538 0.30534643 prediction 0.585752321139028 Functional Loss - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37819137 chr17:37819139 nonsynonymous SNV 0.072 0 23 hm5C_associated_SNPs_55736 0 0 1 0 1 STARD3 chr17:37819057 3'AG 37819057 Downstream 83bp
chr2 28634797 28634797 1 + G T COAD 28634794 + 28634774 28634814 41 ACATCCCTCTCTTTCCGTGGCAGGAGACAGAGGAGCTGGAG ACATCCCTCTCTTTCCGTGGCAGTAGACAGAGGAGCTGGAG < 41bp 0.792875127478598 0.410585253198304 0.86425996 0.46406674 prediction 0.585750254957196 Functional Loss - FOSL2 ENSG00000075426 CDS Human protein_coding chr2:28634794 chr2:28634797 stopgain 0.997 1 24 hm5C_associated_SNPs_55737 0 0 1 0 2 FOSL2 chr2:28634746 3'AG 28634746 Downstream 52bp
chr2 28634797 28634797 1 + G T COAD 28634794 + 28634774 28634814 41 ACATCCCTCTCTTTCCGTGGCAGGAGACAGAGGAGCTGGAG ACATCCCTCTCTTTCCGTGGCAGTAGACAGAGGAGCTGGAG < 41bp 0.792875127478598 0.410585253198304 0.86425996 0.46406674 prediction 0.585750254957196 Functional Loss - FOSL2 ENSG00000075426 CDS Human protein_coding chr2:28634794 chr2:28634797 stopgain 0.997 1 24 hm5C_associated_SNPs_55737 0 0 1 0 2 FOSL2 chr2:28634797 3'AG 28634797 Downstream 1bp
chr11 18387415 18387415 1 + G T LUSC 18387412 + 18387392 18387432 41 ACGGCGTCTGATGAAGAAAACGTGAGGTGGCCATGATGCTT ACGGCGTCTGATGAAGAAAACGTTAGGTGGCCATGATGCTT < 41bp 0.792850960798495 0.441645055909956 0.44961113 0.15214092 prediction 0.585701921596989 Functional Loss - GTF2H1 ENSG00000110768 CDS Human protein_coding chr11:18387412 chr11:18387415 stoploss 0.897 0 24 hm5C_associated_SNPs_55741 0 0 0 0 1 GTF2H1 chr11:18387330 3'AG 18387330 Downstream 86bp
chr12 101436230 101436230 1 + G T PRAD 101436227 + 101436207 101436247 41 TTTTGTATGGCGTCACCACTCTGGATCACAGCCAAGTCAGG TTTTGTATGGCGTCACCACTCTGTATCACAGCCAAGTCAGG < 41bp 0.870102792434086 0.577255913609873 0.25152904 0.060009927 prediction 0.585693757648425 Functional Loss - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101436227 chr12:101436230 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_55742 0 0 0 0 1 ANO4 chr12:101436246 5'GT 101436246 Upstream 17bp
chr12 118577275 118577275 1 + G T SARC 118577272 + 118577252 118577292 41 GCAGAGAATGGCATCATTTCCTGGTGGTCAACATGAAGGGC GCAGAGAATGGCATCATTTCCTGTTGGTCAACATGAAGGGC < 41bp 0.891282709154815 0.598460055565305 0.3236835 0.15936118 prediction 0.58564530717902 Functional Loss - PEBP1 ENSG00000089220 CDS Human protein_coding chr12:118577272 chr12:118577275 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_55746 0 0 0 0 2 PEBP1 chr12:118577256 3'AG 118577256 Downstream 20bp
chr12 118577275 118577275 1 + G T SARC 118577272 + 118577252 118577292 41 GCAGAGAATGGCATCATTTCCTGGTGGTCAACATGAAGGGC GCAGAGAATGGCATCATTTCCTGTTGGTCAACATGAAGGGC < 41bp 0.891282709154815 0.598460055565305 0.3236835 0.15936118 prediction 0.58564530717902 Functional Loss - PEBP1 ENSG00000089220 CDS Human protein_coding chr12:118577272 chr12:118577275 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_55746 0 0 0 0 2 PEBP1 chr12:118577356 5'GT 118577356 Upstream 82bp
chr1 15788127 15788127 1 + G T HNSC 15788124 + 15788104 15788144 41 GGGTCCCTGATAGCCAACAGCTGGGTCCTGACGGCTGCCCA GGGTCCCTGATAGCCAACAGCTGTGTCCTGACGGCTGCCCA < 41bp 0.899910470937941 0.607108887412378 0.41797954 0.16830102 prediction 0.585603167051127 Functional Loss - CELA2A ENSG00000142615 CDS Human protein_coding chr1:15788124 chr1:15788127 nonsynonymous SNV 0.031 4 24 hm5C_associated_SNPs_55747 0 0 0 0 2 CELA2A chr1:15788056 3'AG 15788056 Downstream 72bp
chr1 15788127 15788127 1 + G T HNSC 15788124 + 15788104 15788144 41 GGGTCCCTGATAGCCAACAGCTGGGTCCTGACGGCTGCCCA GGGTCCCTGATAGCCAACAGCTGTGTCCTGACGGCTGCCCA < 41bp 0.899910470937941 0.607108887412378 0.41797954 0.16830102 prediction 0.585603167051127 Functional Loss - CELA2A ENSG00000142615 CDS Human protein_coding chr1:15788124 chr1:15788127 nonsynonymous SNV 0.031 4 24 hm5C_associated_SNPs_55747 0 0 0 0 2 CELA2A chr1:15788153 5'GT 15788153 Upstream 27bp
chr16 80577247 80577247 1 + A C STAD 80577243 + 80577223 80577263 41 TGGAACTATGGTTGTAAATGCAGAAGGTAAATATATCACAG TGGAACTATGGTTGTAAATGCAGACGGTAAATATATCACAG < 41bp 0.792789632919573 0.424823432806727 0.20256442 0.28088906 prediction 0.585579265839145 Functional Loss - DYNLRB2 ENSG00000168589 CDS Human protein_coding chr16:80577243 chr16:80577247 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_55748 0 0 0 3 2 DYNLRB2 chr16:80577173 3'AG 80577173 Downstream 75bp
chr16 80577247 80577247 1 + A C STAD 80577243 + 80577223 80577263 41 TGGAACTATGGTTGTAAATGCAGAAGGTAAATATATCACAG TGGAACTATGGTTGTAAATGCAGACGGTAAATATATCACAG < 41bp 0.792789632919573 0.424823432806727 0.20256442 0.28088906 prediction 0.585579265839145 Functional Loss - DYNLRB2 ENSG00000168589 CDS Human protein_coding chr16:80577243 chr16:80577247 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_55748 0 0 0 3 2 DYNLRB2 chr16:80577248 5'GT 80577248 Upstream 2bp
chr11 114569455 114569455 1 + G T UCEC 114569452 + 114569432 114569472 41 GACCCACATGACCACTAGGACAAGAAATATTTCCTATCTTA GACCCACATGACCACTAGGACAATAAATATTTCCTATCTTA < 41bp 0.792743480241542 0.426109789902783 0.8182983 0.1678324 prediction 0.585486960483083 Functional Loss - NXPE2 ENSG00000204361 CDS Human protein_coding chr11:114569452 chr11:114569455 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_55753 0 0 0 0 1 NXPE2 chr11:114569500 5'GT 114569500 Upstream 46bp
chrX 47085748 47085748 1 + A C UCEC 47085744 + 47085724 47085764 41 AGAAGGTGCTACACCGAGACCTCAAGCCCCAGAACCTGCTC AGAAGGTGCTACACCGAGACCTCACGCCCCAGAACCTGCTC < 41bp 0.792721057247914 0.365144638790326 0.34276414 0.13459644 prediction 0.585442114495827 Functional Loss - CDK16 ENSG00000102225 CDS Human protein_coding chrX:47085744 chrX:47085748 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_55758 0 0 1 1 2 CDK16 chrX:47085678 3'AG 47085678 Downstream 71bp
chrX 47085748 47085748 1 + A C UCEC 47085744 + 47085724 47085764 41 AGAAGGTGCTACACCGAGACCTCAAGCCCCAGAACCTGCTC AGAAGGTGCTACACCGAGACCTCACGCCCCAGAACCTGCTC < 41bp 0.792721057247914 0.365144638790326 0.34276414 0.13459644 prediction 0.585442114495827 Functional Loss - CDK16 ENSG00000102225 CDS Human protein_coding chrX:47085744 chrX:47085748 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_55758 0 0 1 1 2 CDK16 chrX:47085801 5'GT 47085801 Upstream 54bp
chr12 40158557 40158557 1 + G T UCEC 40158554 + 40158534 40158574 41 TTTACCAGGTGCAAAGAAGACAAGATATAAAATAAGGCCCA TTTACCAGGTGCAAAGAAGACAATATATAAAATAAGGCCCA < 41bp 0.792720985765971 0.451348917451921 0.80332506 0.109743476 prediction 0.585441971531942 Functional Loss - SLC2A13 ENSG00000151229 CDS Human protein_coding chr12:40158554 chr12:40158557 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_55759 0 0 0 0 2 SLC2A13 chr12:40158542 3'AG 40158542 Downstream 16bp
chr12 40158557 40158557 1 + G T UCEC 40158554 + 40158534 40158574 41 TTTACCAGGTGCAAAGAAGACAAGATATAAAATAAGGCCCA TTTACCAGGTGCAAAGAAGACAATATATAAAATAAGGCCCA < 41bp 0.792720985765971 0.451348917451921 0.80332506 0.109743476 prediction 0.585441971531942 Functional Loss - SLC2A13 ENSG00000151229 CDS Human protein_coding chr12:40158554 chr12:40158557 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_55759 0 0 0 0 2 SLC2A13 chr12:40158611 5'GT 40158611 Upstream 55bp
chr6 136512787 136512787 1 + G T LUSC 136512784 + 136512764 136512804 41 ACATCGTGGAGCCGCTCTTCCGGGAATGGGCCCATTTCACG ACATCGTGGAGCCGCTCTTCCGGTAATGGGCCCATTTCACG < 41bp 0.876425567209007 0.583706261716543 0.9105839 0.32805568 prediction 0.585438610984927 Functional Loss - PDE7B ENSG00000171408 CDS Human protein_coding chr6:136512784 chr6:136512787 stopgain 0.999 1 24 hm5C_associated_SNPs_55760 0 0 0 0 1 PDE7B chr6:136512752 3'AG 136512752 Downstream 36bp
chr22 30124659 30124659 1 + G T LUSC 30124657 + 30124637 30124677 41 TTGAGGAGTTTGTGACCCTTCTGGGACCCAAACTCTCCACC TTGAGGAGTTTGTGACCCTTCTTGGACCCAAACTCTCCACC < 41bp 0.85987662533766 0.567161754967889 0.3562631 0.07104084 prediction 0.585429740739542 Functional Loss - CABP7 ENSG00000100314 CDS Human protein_coding chr22:30124657 chr22:30124659 synonymous SNV . 0 23 hm5C_associated_SNPs_55761 0 0 0 0 2 CABP7 chr22:30124619 3'AG 30124619 Downstream 41bp
chr22 30124659 30124659 1 + G T LUSC 30124657 + 30124637 30124677 41 TTGAGGAGTTTGTGACCCTTCTGGGACCCAAACTCTCCACC TTGAGGAGTTTGTGACCCTTCTTGGACCCAAACTCTCCACC < 41bp 0.85987662533766 0.567161754967889 0.3562631 0.07104084 prediction 0.585429740739542 Functional Loss - CABP7 ENSG00000100314 CDS Human protein_coding chr22:30124657 chr22:30124659 synonymous SNV . 0 23 hm5C_associated_SNPs_55761 0 0 0 0 2 CABP7 chr22:30124731 5'GT 30124731 Upstream 73bp
chr10 115335688 115335688 1 + G C COAD 115335684 + 115335664 115335704 41 CAGCCCAACCCCTGTGAACACGGTGGGGACTGCCTCGTCCA CAGCCCAACCCCTGTGAACACGGTCGGGACTGCCTCGTCCA < 41bp 0.795439629686918 0.502750139105437 0.40801018 0.088223726 prediction 0.585378981162962 Functional Loss - HABP2 ENSG00000148702 CDS Human protein_coding chr10:115335684 chr10:115335688 nonsynonymous SNV 0.134 5 25 hm5C_associated_SNPs_55764 0 0 0 0 2 HABP2 chr10:115335656 3'AG 115335656 Downstream 33bp
chr10 115335688 115335688 1 + G C COAD 115335684 + 115335664 115335704 41 CAGCCCAACCCCTGTGAACACGGTGGGGACTGCCTCGTCCA CAGCCCAACCCCTGTGAACACGGTCGGGACTGCCTCGTCCA < 41bp 0.795439629686918 0.502750139105437 0.40801018 0.088223726 prediction 0.585378981162962 Functional Loss - HABP2 ENSG00000148702 CDS Human protein_coding chr10:115335684 chr10:115335688 nonsynonymous SNV 0.134 5 25 hm5C_associated_SNPs_55764 0 0 0 0 2 HABP2 chr10:115335763 5'GT 115335763 Upstream 76bp
chr16 29815333 29815333 1 + G T UCEC 29815331 + 29815311 29815351 41 ACTTTCAGTTCAGGAGCAGGCAGCATCCCCAAATGCCGAGA ACTTTCAGTTCAGGAGCAGGCATCATCCCCAAATGCCGAGA < 41bp 0.792672919604183 0.456858655322767 0.11342728 0.070854545 prediction 0.585345839208366 Functional Loss - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29815331 chr16:29815333 nonsynonymous SNV 0.034 0 23 hm5C_associated_SNPs_55765 0 0 1 0 2 KIF22 chr16:29815319 3'AG 29815319 Downstream 15bp
chr16 29815333 29815333 1 + G T UCEC 29815331 + 29815311 29815351 41 ACTTTCAGTTCAGGAGCAGGCAGCATCCCCAAATGCCGAGA ACTTTCAGTTCAGGAGCAGGCATCATCCCCAAATGCCGAGA < 41bp 0.792672919604183 0.456858655322767 0.11342728 0.070854545 prediction 0.585345839208366 Functional Loss - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29815331 chr16:29815333 nonsynonymous SNV 0.034 0 23 hm5C_associated_SNPs_55765 0 0 1 0 2 KIF22 chr16:29815386 5'GT 29815386 Upstream 54bp
chr2 96686952 96686952 1 + G T UCEC 96686949 + 96686929 96686969 41 AACACCAACCAGATGGTATTCAAGACAGAGGACCTGATAGC AACACCAACCAGATGGTATTCAATACAGAGGACCTGATAGC < 41bp 0.79266562357213 0.433369019052597 0.40957275 0.2940014 prediction 0.58533124714426 Functional Loss - FAHD2CP ENSG00000231584 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:96686949 chr2:96686952 . . 0 24 hm5C_associated_SNPs_55766 0 0 0 0 2 FAHD2CP chr2:96686873 3'AG 96686873 Downstream 80bp
chr2 96686952 96686952 1 + G T UCEC 96686949 + 96686929 96686969 41 AACACCAACCAGATGGTATTCAAGACAGAGGACCTGATAGC AACACCAACCAGATGGTATTCAATACAGAGGACCTGATAGC < 41bp 0.79266562357213 0.433369019052597 0.40957275 0.2940014 prediction 0.58533124714426 Functional Loss - FAHD2CP ENSG00000231584 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:96686949 chr2:96686952 . . 0 24 hm5C_associated_SNPs_55766 0 0 0 0 2 FAHD2CP chr2:96686981 5'GT 96686981 Upstream 30bp
chr15 92690292 92690292 1 + G T LUSC 92690290 + 92690270 92690310 41 TCCTGGAAAATGCCCCAGTCCTGGGTGCCAAGAGGCCTTCC TCCTGGAAAATGCCCCAGTCCTTGGTGCCAAGAGGCCTTCC < 41bp 0.792652836212749 0.469658812806112 0.36397207 0.15364882 prediction 0.585305672425498 Functional Loss - SLCO3A1 ENSG00000176463 CDS Human protein_coding chr15:92690290 chr15:92690292 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_55767 0 0 1 2 2 SLCO3A1 chr15:92690214 3'AG 92690214 Downstream 79bp
chr15 92690292 92690292 1 + G T LUSC 92690290 + 92690270 92690310 41 TCCTGGAAAATGCCCCAGTCCTGGGTGCCAAGAGGCCTTCC TCCTGGAAAATGCCCCAGTCCTTGGTGCCAAGAGGCCTTCC < 41bp 0.792652836212749 0.469658812806112 0.36397207 0.15364882 prediction 0.585305672425498 Functional Loss - SLCO3A1 ENSG00000176463 CDS Human protein_coding chr15:92690290 chr15:92690292 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_55767 0 0 1 2 2 SLCO3A1 chr15:92690389 5'GT 92690389 Upstream 98bp
chr1 37947376 37947376 1 + G C BLCA 37947375 + 37947355 37947395 41 ACCGTGACCTCCAAGGCGAGCGGCAGGAGTGGAAGCGCTTC ACCGTGACCTCCAAGGCGAGCCGCAGGAGTGGAAGCGCTTC < 41bp 0.792600783733238 0.490163197242948 0.8704984 0.36070573 prediction 0.585201567466475 Functional Loss - ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947375 chr1:37947376 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_55772 0 0 0 0 1 ZC3H12A chr1:37947436 5'GT 37947436 Upstream 61bp
chr1 20417104 20417104 1 + G T HNSC 20417102 + 20417082 20417122 41 TGAACCTCTGTGCCTGTGACCGGAAGCTCGTCTACTGCCTC TGAACCTCTGTGCCTGTGACCGTAAGCTCGTCTACTGCCTC < 41bp 0.792595862778893 0.458608908854696 0.9105921 0.6323863 prediction 0.585191725557787 Functional Loss - PLA2G5 ENSG00000127472 CDS Human protein_coding chr1:20417102 chr1:20417104 synonymous SNV . 0 23 hm5C_associated_SNPs_55773 0 0 0 0 1 PLA2G5 chr1:20417061 3'AG 20417061 Downstream 44bp
chr1 26153187 26153187 1 + G T SARC 26153185 + 26153165 26153205 41 GCAATGCCTCTGTTCCCAACCTGCGTGGGTCCGAGGAGAGG GCAATGCCTCTGTTCCCAACCTTCGTGGGTCCGAGGAGAGG < 41bp 0.792590667271356 0.486154414191457 0.23673904 0.18517736 prediction 0.585181334542712 Functional Loss - MTFR1L ENSG00000117640 CDS Human protein_coding chr1:26153185 chr1:26153187 synonymous SNV . 0 23 hm5C_associated_SNPs_55774 0 0 1 0 1 MTFR1L chr1:26153106 3'AG 26153106 Downstream 82bp
chr4 95497177 95497177 1 + G T UCEC 95497175 + 95497155 95497195 41 GATCCCAGGGTGACAGTAAACAGCAAAATGGGTAGGTGGCT GATCCCAGGGTGACAGTAAACATCAAAATGGGTAGGTGGCT < 41bp 0.792558559864642 0.497263320906668 0.21566889 0.11254078 prediction 0.585117119729285 Functional Loss - PDLIM5 ENSG00000163110 CDS Human protein_coding chr4:95497175 chr4:95497177 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_55778 0 0 1 0 2 PDLIM5 chr4:95497094 3'AG 95497094 Downstream 84bp
chr4 95497177 95497177 1 + G T UCEC 95497175 + 95497155 95497195 41 GATCCCAGGGTGACAGTAAACAGCAAAATGGGTAGGTGGCT GATCCCAGGGTGACAGTAAACATCAAAATGGGTAGGTGGCT < 41bp 0.792558559864642 0.497263320906668 0.21566889 0.11254078 prediction 0.585117119729285 Functional Loss - PDLIM5 ENSG00000163110 CDS Human protein_coding chr4:95497175 chr4:95497177 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_55778 0 0 1 0 2 PDLIM5 chr4:95497185 5'GT 95497185 Upstream 9bp
chr11 36472822 36472822 1 + G T LUAD 36472819 + 36472799 36472839 41 AACTGGAGGAGCTGGTGAAGCAAGTGGTTTCTCCTTTCCTC AACTGGAGGAGCTGGTGAAGCAATTGGTTTCTCCTTTCCTC < 41bp 0.792557740479634 0.404666145120382 0.30930042 0.17305973 prediction 0.585115480959268 Functional Loss - PRR5L ENSG00000135362 CDS Human protein_coding chr11:36472819 chr11:36472822 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55779 0 0 0 0 1 PRR5L chr11:36472885 5'GT 36472885 Upstream 64bp
chr12 106740140 106740140 1 + A C rs150328481 106740136 + 106740116 106740156 41 AAAATGCATGCCTCCTATGCCAGGAGGCCTAGCTGTCATTC AAAATGCATGCCTCCTATGCCAGGCGGCCTAGCTGTCATTC < 41bp 0.883082551290235 0.590546904825934 0.9157838 0.88052833 prediction 0.585071292928601 Functional Loss - TCP11L2 ENSG00000166046 CDS Human protein_coding chr12:106740136 chr12:106740140 synonymous SNV . 0 25 hm5C_associated_SNPs_55783 0 0 0 0 1 TCP11L2 chr12:106740064 3'AG 106740064 Downstream 77bp
chr8 86356323 86356323 1 + G T LUSC 86356320 + 86356300 86356340 41 TTAAAGAAGCCCTGAAGCAGCGCGATGGGATCGCTGTGATT TTAAAGAAGCCCTGAAGCAGCGCTATGGGATCGCTGTGATT < 41bp 0.88662368803676 0.594112936135526 0.3670157 0.20799044 prediction 0.585021503802469 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86356320 chr8:86356323 nonsynonymous SNV 0.682 4 24 hm5C_associated_SNPs_55787 0 0 0 0 2 CA3 chr8:86356263 3'AG 86356263 Downstream 61bp
chr8 86356323 86356323 1 + G T LUSC 86356320 + 86356300 86356340 41 TTAAAGAAGCCCTGAAGCAGCGCGATGGGATCGCTGTGATT TTAAAGAAGCCCTGAAGCAGCGCTATGGGATCGCTGTGATT < 41bp 0.88662368803676 0.594112936135526 0.3670157 0.20799044 prediction 0.585021503802469 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86356320 chr8:86356323 nonsynonymous SNV 0.682 4 24 hm5C_associated_SNPs_55787 0 0 0 0 2 CA3 chr8:86356355 5'GT 86356355 Upstream 33bp
chr6 112375518 112375518 1 + G T BLCA 112375516 + 112375496 112375536 41 TACCCGGAGCAATGAACAAGCGGCGACTTCTCTACCCCTCA TACCCGGAGCAATGAACAAGCGTCGACTTCTCTACCCCTCA < 41bp 0.859578003889268 0.567085928068516 0.5872702 0.23845142 prediction 0.584984151641504 Functional Loss - WISP3 ENSG00000112761 CDS Human protein_coding chr6:112375516 chr6:112375518 synonymous SNV . 0 23 hm5C_associated_SNPs_55788 0 0 0 0 1 WISP3 chr6:112375608 5'GT 112375608 Upstream 91bp
chr1 158325164 158325164 1 + G T UCEC 158325161 + 158325141 158325181 41 TCTTCTTAAATATGGCATATCAAGGGTCAGATTTCCTGAGT TCTTCTTAAATATGGCATATCAATGGTCAGATTTCCTGAGT < 41bp 0.79247845079104 0.458850732968705 0.9137099 0.3222039 prediction 0.584956901582081 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325161 chr1:158325164 nonsynonymous SNV 0.396 3 24 hm5C_associated_SNPs_55789 0 0 0 0 1 CD1E chr1:158325090 3'AG 158325090 Downstream 75bp
chr1 153749685 153749685 1 + G T SARC 153749683 + 153749663 153749703 41 TCCCTGCTGGGCATCGTGGGCTGCATGGGCATTGGTCAGTC TCCCTGCTGGGCATCGTGGGCTTCATGGGCATTGGTCAGTC < 41bp 0.833094251182817 0.540646295331346 0.35378632 0.35680446 prediction 0.584895911702941 Functional Loss - SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153749683 chr1:153749685 nonsynonymous SNV 0.981 4 23 hm5C_associated_SNPs_55792 0 0 0 0 1 SLC27A3 chr1:153749696 5'GT 153749696 Upstream 12bp
chrX 49106025 49106025 1 + A T BLCA 49106021 + 49106001 49106041 41 CCTATAAGTATCTAGCTGCTCTGCACGAGGTGAGGGGAGAC CCTATAAGTATCTAGCTGCTCTGCTCGAGGTGAGGGGAGAC < 41bp 0.79244365632808 0.467563197309529 0.10706887 0.06070754 prediction 0.58488731265616 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49106021 chrX:49106025 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_55793 0 0 0 0 2 CCDC22 chrX:49105970 3'AG 49105970 Downstream 56bp
chrX 49106025 49106025 1 + A T BLCA 49106021 + 49106001 49106041 41 CCTATAAGTATCTAGCTGCTCTGCACGAGGTGAGGGGAGAC CCTATAAGTATCTAGCTGCTCTGCTCGAGGTGAGGGGAGAC < 41bp 0.79244365632808 0.467563197309529 0.10706887 0.06070754 prediction 0.58488731265616 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49106021 chrX:49106025 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_55793 0 0 0 0 2 CCDC22 chrX:49106029 5'GT 49106029 Upstream 5bp
chr10 7780676 7780676 1 + G T UCEC 7780673 + 7780653 7780693 41 CCGTGATCTCCATGCTGGCACAAGGATCTCAGGTGCTAGAG CCGTGATCTCCATGCTGGCACAATGATCTCAGGTGCTAGAG < 41bp 0.792412704662142 0.399356292834144 0.21937892 0.01740715 prediction 0.584825409324285 Functional Loss - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7780673 chr10:7780676 stopgain 0.005 0 24 hm5C_associated_SNPs_55795 0 0 1 0 2 ITIH2 chr10:7780584 3'AG 7780584 Downstream 93bp
chr10 7780676 7780676 1 + G T UCEC 7780673 + 7780653 7780693 41 CCGTGATCTCCATGCTGGCACAAGGATCTCAGGTGCTAGAG CCGTGATCTCCATGCTGGCACAATGATCTCAGGTGCTAGAG < 41bp 0.792412704662142 0.399356292834144 0.21937892 0.01740715 prediction 0.584825409324285 Functional Loss - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7780673 chr10:7780676 stopgain 0.005 0 24 hm5C_associated_SNPs_55795 0 0 1 0 2 ITIH2 chr10:7780721 5'GT 7780721 Upstream 46bp
chr1 10190617 10190617 1 + G T BLCA 10190615 + 10190595 10190635 41 GTCCTGGCTGTGGGCGGGAGCTGCAGAGACTCTCTTACTTA GTCCTGGCTGTGGGCGGGAGCTTCAGAGACTCTCTTACTTA < 41bp 0.827118467943753 0.534721183307117 0.812955 0.74035203 prediction 0.584794569273273 Functional Loss - UBE4B ENSG00000130939 CDS Human protein_coding chr1:10190615 chr1:10190617 synonymous SNV . 0 23 hm5C_associated_SNPs_55798 0 0 1 0 2 UBE4B chr1:10190558 3'AG 10190558 Downstream 60bp
chr1 10190617 10190617 1 + G T BLCA 10190615 + 10190595 10190635 41 GTCCTGGCTGTGGGCGGGAGCTGCAGAGACTCTCTTACTTA GTCCTGGCTGTGGGCGGGAGCTTCAGAGACTCTCTTACTTA < 41bp 0.827118467943753 0.534721183307117 0.812955 0.74035203 prediction 0.584794569273273 Functional Loss - UBE4B ENSG00000130939 CDS Human protein_coding chr1:10190615 chr1:10190617 synonymous SNV . 0 23 hm5C_associated_SNPs_55798 0 0 1 0 2 UBE4B chr1:10190674 5'GT 10190674 Upstream 58bp
chr11 118527482 118527482 1 + G T LUAD 118527479 + 118527459 118527499 41 TCTGCAGAGGCCATGCGTATCTGGATGGATGTCATTGTCAC TCTGCAGAGGCCATGCGTATCTGTATGGATGTCATTGTCAC < 41bp 0.86098159265778 0.568587675545156 0.42022926 0.1483613 prediction 0.584787834225247 Functional Loss - PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118527479 chr11:118527482 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_55799 0 0 1 0 1 PHLDB1 chr11:118527393 3'AG 118527393 Downstream 90bp
chr16 67036993 67036993 1 + G T TGCT 67036990 + 67036970 67037010 41 CAGATGATGTCACCCCTAGCCTCGGGTCTCTTCCATCGGGC CAGATGATGTCACCCCTAGCCTCTGGTCTCTTCCATCGGGC < 41bp 0.792357342332548 0.40509325059175 0.3315786 0.14556453 prediction 0.584714684665097 Functional Loss - CES4A ENSG00000172824 CDS Human protein_coding chr16:67036990 chr16:67036993 synonymous SNV . 0 24 hm5C_associated_SNPs_55801 0 0 0 0 2 CES4A chr16:67036973 3'AG 67036973 Downstream 21bp
chr16 67036993 67036993 1 + G T TGCT 67036990 + 67036970 67037010 41 CAGATGATGTCACCCCTAGCCTCGGGTCTCTTCCATCGGGC CAGATGATGTCACCCCTAGCCTCTGGTCTCTTCCATCGGGC < 41bp 0.792357342332548 0.40509325059175 0.3315786 0.14556453 prediction 0.584714684665097 Functional Loss - CES4A ENSG00000172824 CDS Human protein_coding chr16:67036990 chr16:67036993 synonymous SNV . 0 24 hm5C_associated_SNPs_55801 0 0 0 0 2 CES4A chr16:67037077 5'GT 67037077 Upstream 85bp
chr2 219268075 219268075 1 + G T UCEC 219268072 + 219268052 219268092 41 AGGACCTGAGCCGGTTGGGTCGAGACCTGCGGCGGGTGCTC AGGACCTGAGCCGGTTGGGTCGATACCTGCGGCGGGTGCTC < 41bp 0.792348035508945 0.423831682963239 0.87339246 0.4381505 prediction 0.584696071017891 Functional Loss - CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219268072 chr2:219268075 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55802 0 0 1 0 1 CTDSP1 chr2:219268140 5'GT 219268140 Upstream 66bp
chr3 52453872 52453872 1 + G T UCEC 52453870 + 52453850 52453890 41 TCTTATCTAGTAAGCTGCCTCAGAGGGGCCAGTCCAACAGA TCTTATCTAGTAAGCTGCCTCATAGGGGCCAGTCCAACAGA < 41bp 0.792340399812084 0.453006635364264 0.71196365 0.17551735 prediction 0.584680799624168 Functional Loss - PHF7 ENSG00000010318 CDS Human protein_coding chr3:52453870 chr3:52453872 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_55803 0 0 0 0 2 PHF7 chr3:52453849 3'AG 52453849 Downstream 24bp
chr3 52453872 52453872 1 + G T UCEC 52453870 + 52453850 52453890 41 TCTTATCTAGTAAGCTGCCTCAGAGGGGCCAGTCCAACAGA TCTTATCTAGTAAGCTGCCTCATAGGGGCCAGTCCAACAGA < 41bp 0.792340399812084 0.453006635364264 0.71196365 0.17551735 prediction 0.584680799624168 Functional Loss - PHF7 ENSG00000010318 CDS Human protein_coding chr3:52453870 chr3:52453872 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_55803 0 0 0 0 2 PHF7 chr3:52453950 5'GT 52453950 Upstream 79bp
chr12 121125323 121125323 1 + G T LUAD 121125321 + 121125301 121125341 41 CGCAAGGACCCTTTGGAAGGCCGGGTGGGCCGAGGTGAGAG CGCAAGGACCCTTTGGAAGGCCTGGTGGGCCGAGGTGAGAG < 41bp 0.792323668457252 0.463052882263101 0.39608917 0.14384505 prediction 0.584647336914505 Functional Loss - MLEC ENSG00000110917 CDS Human protein_coding chr12:121125321 chr12:121125323 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_55805 0 0 1 0 1 MLEC chr12:121125334 5'GT 121125334 Upstream 12bp
chr5 134229342 134229342 1 + G T COAD 134229340 + 134229320 134229360 41 GCACTGGATGCATCTCAGCACAGCAGGTATCTTCCATTGGT GCACTGGATGCATCTCAGCACATCAGGTATCTTCCATTGGT < 41bp 0.826879649991535 0.534559446902071 0.28325814 0.28924176 prediction 0.584640406178927 Functional Loss - TXNDC15 ENSG00000113621 CDS Human protein_coding chr5:134229340 chr5:134229342 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_55807 0 0 1 1 1 TXNDC15 chr5:134229345 5'GT 134229345 Upstream 4bp
chr21 42609500 42609500 1 + G T OV 42609497 + 42609477 42609517 41 GTGAAGTACACACAAGGAAGCTGGACGGGCTTCGTTGGGGA GTGAAGTACACACAAGGAAGCTGTACGGGCTTCGTTGGGGA < 41bp 0.792301886467142 0.415108201162422 0.16223648 0.12272295 prediction 0.584603772934285 Functional Loss - BACE2 ENSG00000182240 CDS Human protein_coding chr21:42609497 chr21:42609500 nonsynonymous SNV 0.905 4 24 hm5C_associated_SNPs_55811 0 0 1 0 1 BACE2 chr21:42609440 3'AG 42609440 Downstream 61bp
chr10 72179837 72179837 1 + G T LAML 72179834 + 72179814 72179854 41 ATTTGAACAACTTGAACAATCACGACAGGAAACATGCAGTT ATTTGAACAACTTGAACAATCACTACAGGAAACATGCAGTT < 41bp 0.792295073916407 0.4425815596329 0.06842786 0.09047744 prediction 0.584590147832814 Functional Loss - EIF4EBP2 ENSG00000148730 CDS Human protein_coding chr10:72179834 chr10:72179837 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_55814 0 0 1 0 1 EIF4EBP2 chr10:72179855 5'GT 72179855 Upstream 19bp
chrX 70756094 70756094 1 + G T KIRC 70756091 + 70756071 70756111 41 GGCACATCGAGAATATCAGGCAGGAGATTTTGAGGCAGCTG GGCACATCGAGAATATCAGGCAGTAGATTTTGAGGCAGCTG < 41bp 0.79229447183468 0.416124570048003 0.41545555 0.14060187 prediction 0.584588943669359 Functional Loss - OGT ENSG00000147162 CDS Human protein_coding chrX:70756091 chrX:70756094 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_55815 0 0 1 0 2 OGT chrX:70756028 3'AG 70756028 Downstream 67bp
chrX 70756094 70756094 1 + G T KIRC 70756091 + 70756071 70756111 41 GGCACATCGAGAATATCAGGCAGGAGATTTTGAGGCAGCTG GGCACATCGAGAATATCAGGCAGTAGATTTTGAGGCAGCTG < 41bp 0.79229447183468 0.416124570048003 0.41545555 0.14060187 prediction 0.584588943669359 Functional Loss - OGT ENSG00000147162 CDS Human protein_coding chrX:70756091 chrX:70756094 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_55815 0 0 1 0 2 OGT chrX:70756058 3'AG 70756058 Downstream 37bp
chr6 150269921 150269921 1 + G T rs114531652 150269919 + 150269899 150269939 41 GATCAAACTCGCCCTTCTGTCTGGCCAGCTGCCCACGACCT GATCAAACTCGCCCTTCTGTCTTGCCAGCTGCCCACGACCT < 41bp 0.8280723651627 0.535799974426951 0.20649007 0.054303914 prediction 0.584544781471497 Functional Loss - ULBP2 ENSG00000131015 UTR3 Human protein_coding chr6:150269919 chr6:150269921 . . 0 23 hm5C_associated_SNPs_55816 0 0 1 0 1 ULBP2 chr6:150269859 3'AG 150269859 Downstream 63bp
chr17 47590150 47590150 1 + G T OV 47590148 + 47590128 47590168 41 GGAGAAGCTTCTCAACGGCTCTGCGGGGGACACCTGGCGGC GGAGAAGCTTCTCAACGGCTCTTCGGGGGACACCTGGCGGC < 41bp 0.826875824593877 0.534621582127575 0.54451 0.6239097 prediction 0.584508484932605 Functional Loss - NGFR ENSG00000064300 CDS Human protein_coding chr17:47590148 chr17:47590150 nonsynonymous SNV 0.661 1 23 hm5C_associated_SNPs_55819 0 0 0 0 1 NGFR chr17:47590070 3'AG 47590070 Downstream 81bp
chr3 169540634 169540634 1 + G T LUSC 169540631 + 169540611 169540651 41 GCCTGGTCAACTTGCGCTTCCTGGACCTAAGCCAGAACCAT GCCTGGTCAACTTGCGCTTCCTGTACCTAAGCCAGAACCAT < 41bp 0.882183592257733 0.589945871053393 0.21169108 0.14181316 prediction 0.58447544240868 Functional Loss - LRRIQ4 ENSG00000188306 CDS Human protein_coding chr3:169540631 chr3:169540634 nonsynonymous SNV 0.886 3 24 hm5C_associated_SNPs_55820 0 0 0 0 1 LRRIQ4 chr3:169540729 5'GT 169540729 Upstream 96bp
chr6 97000488 97000488 1 + G T LUSC 97000486 + 97000466 97000506 41 CCACAGCATGCTCCATGCACCTGGAAGATGTGTCCCACAGA CCACAGCATGCTCCATGCACCTTGAAGATGTGTCCCACAGA < 41bp 0.808415265366705 0.516180281532203 0.08621621 0.008485496 prediction 0.584469967669002 Functional Loss - UFL1 ENSG00000014123 CDS Human protein_coding chr6:97000486 chr6:97000488 stopgain 1.000 1 23 hm5C_associated_SNPs_55821 0 0 1 0 1 UFL1 chr6:97000538 5'GT 97000538 Upstream 51bp
chr12 52452475 52452475 1 + G C LUAD 52452474 + 52452454 52452494 41 CCTGTACCCTTCCCGCAGACCGGCATGGGCTGCAGGAGCCG CCTGTACCCTTCCCGCAGACCCGCATGGGCTGCAGGAGCCG < 41bp 0.7922294857485 0.490308180149526 0.33730927 0.14224449 prediction 0.584458971497001 Functional Loss - NR4A1 ENSG00000123358 CDS Human protein_coding chr12:52452474 chr12:52452475 nonsynonymous SNV 0.956 4 22 hm5C_associated_SNPs_55823 0 0 1 0 1 NR4A1 chr12:52452472 3'AG 52452472 Downstream 4bp
chr3 52818484 52818484 1 + G T COAD 52818482 + 52818462 52818502 41 ACGAGGACCATGATGCCACCCAGCAGCTGCAGGTCTCCCCT ACGAGGACCATGATGCCACCCATCAGCTGCAGGTCTCCCCT < 41bp 0.856292768481214 0.564074178660194 0.39726806 0.0402022 prediction 0.584437179642039 Functional Loss - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52818482 chr3:52818484 nonsynonymous SNV 0.964 4 23 hm5C_associated_SNPs_55825 0 0 0 0 1 ITIH1 chr3:52818493 5'GT 52818493 Upstream 10bp
chr16 2130194 2130194 1 + G T LUAD 2130192 + 2130172 2130212 41 ATGGTCTTCGAGTTGGCGCCCTGGACGTGCCGGCCTCCCAG ATGGTCTTCGAGTTGGCGCCCTTGACGTGCCGGCCTCCCAG < 41bp 0.792200429357704 0.471321740797484 0.85941416 0.46571395 prediction 0.584400858715407 Functional Loss - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2130192 chr16:2130194 synonymous SNV . 0 23 hm5C_associated_SNPs_55828 0 0 1 0 1 TSC2 chr16:2130166 3'AG 2130166 Downstream 29bp
chr1 215345456 215345456 1 + G T LUAD 215345453 + 215345433 215345473 41 ATATTCAAACACATAGAAGGCTGGAGTGCCCTGGACGCCAT ATATTCAAACACATAGAAGGCTGTAGTGCCCTGGACGCCAT < 41bp 0.869444650024773 0.577254537374617 0.1998753 0.045097232 prediction 0.584380225300312 Functional Loss - KCNK2 ENSG00000082482 CDS Human protein_coding chr1:215345453 chr1:215345456 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55829 0 0 0 0 1 KCNK2 chr1:215345526 5'GT 215345526 Upstream 71bp
chr5 79351687 79351687 1 + G T LUAD 79351685 + 79351665 79351705 41 TGCAGCTGGCAGACGGAAGGCGGCACAGGATCCTCCTGAGG TGCAGCTGGCAGACGGAAGGCGTCACAGGATCCTCCTGAGG < 41bp 0.8442745853049 0.552092081449835 0.4226166 0.1809052 prediction 0.584365007710129 Functional Loss - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79351685 chr5:79351687 synonymous SNV . 0 23 hm5C_associated_SNPs_55830 0 0 0 0 1 THBS4 chr5:79351608 3'AG 79351608 Downstream 80bp
chr4 141294835 141294835 1 + G T SARC 141294833 + 141294813 141294853 41 AGTGTCCCGGCCTGAGGTGTCGGCCGGATCCCTCCTTCTCC AGTGTCCCGGCCTGAGGTGTCGTCCGGATCCCTCCTTCTCC < 41bp 0.792179484609869 0.475037092375866 0.589863 0.25876993 prediction 0.584358969219738 Functional Loss - SCOC ENSG00000153130 CDS Human protein_coding chr4:141294833 chr4:141294835 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_55831 0 0 1 0 1 SCOC chr4:141294871 5'GT 141294871 Upstream 37bp
chr2 173356009 173356009 1 + A C UCEC 173356005 + 173355985 173356025 41 TGCCCGCTGCGGGGGCTGGACAGCAAGGCGTCTCTTATTTT TGCCCGCTGCGGGGGCTGGACAGCCAGGCGTCTCTTATTTT < 41bp 0.792170711359642 0.385415197176944 0.11267549 0.05466798 prediction 0.584341422719284 Functional Loss - ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173356005 chr2:173356009 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_55833 0 0 1 0 2 ITGA6 chr2:173355949 3'AG 173355949 Downstream 61bp
chr2 173356009 173356009 1 + A C UCEC 173356005 + 173355985 173356025 41 TGCCCGCTGCGGGGGCTGGACAGCAAGGCGTCTCTTATTTT TGCCCGCTGCGGGGGCTGGACAGCCAGGCGTCTCTTATTTT < 41bp 0.792170711359642 0.385415197176944 0.11267549 0.05466798 prediction 0.584341422719284 Functional Loss - ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173356005 chr2:173356009 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_55833 0 0 1 0 2 ITGA6 chr2:173356059 5'GT 173356059 Upstream 51bp
chr9 12704606 12704606 1 + G T LUAD 12704604 + 12704584 12704624 41 TCATCTATTCCTGAATGGAACAGGGGGACAAACCCATTTGT TCATCTATTCCTGAATGGAACATGGGGACAAACCCATTTGT < 41bp 0.792168047875472 0.458068702616977 0.9411902 0.23545754 prediction 0.584336095750944 Functional Loss - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12704604 chr9:12704606 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_55834 0 0 0 0 2 TYRP1 chr9:12704526 3'AG 12704526 Downstream 81bp
chr9 12704606 12704606 1 + G T LUAD 12704604 + 12704584 12704624 41 TCATCTATTCCTGAATGGAACAGGGGGACAAACCCATTTGT TCATCTATTCCTGAATGGAACATGGGGACAAACCCATTTGT < 41bp 0.792168047875472 0.458068702616977 0.9411902 0.23545754 prediction 0.584336095750944 Functional Loss - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12704604 chr9:12704606 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_55834 0 0 0 0 2 TYRP1 chr9:12704705 5'GT 12704705 Upstream 100bp
chr16 5046911 5046911 1 + A C BLCA 5046907 + 5046887 5046927 41 TGCGGGCTCATGACTTCCACCTGGACAAGGCCCGGGAAATG TGCGGGCTCATGACTTCCACCTGGCCAAGGCCCGGGAAATG < 41bp 0.792156502316573 0.37791435974939 0.25956517 0.26158398 prediction 0.584313004633146 Functional Loss - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5046907 chr16:5046911 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_55838 0 0 0 0 1 SEC14L5 chr16:5046856 3'AG 5046856 Downstream 56bp
chr16 5046910 5046910 1 + G T UCEC 5046907 + 5046887 5046927 41 TGCGGGCTCATGACTTCCACCTGGACAAGGCCCGGGAAATG TGCGGGCTCATGACTTCCACCTGTACAAGGCCCGGGAAATG < 41bp 0.792156502316573 0.405170951401676 0.25956517 0.18255362 prediction 0.584313004633146 Functional Loss - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5046907 chr16:5046910 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_55839 0 0 0 0 1 SEC14L5 chr16:5046856 3'AG 5046856 Downstream 55bp
chr20 62663358 62663358 1 + G T UCEC 62663355 + 62663335 62663375 41 GACTCGGACCTGGGGGATGCCTGGGCCTTCTTCTACAAGTT GACTCGGACCTGGGGGATGCCTGTGCCTTCTTCTACAAGTT < 41bp 0.792154051835544 0.407135943180841 0.7589184 0.3089775 prediction 0.584308103671089 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62663355 chr20:62663358 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_55840 0 0 1 0 2 PRPF6 chr20:62663271 3'AG 62663271 Downstream 88bp
chr20 62663358 62663358 1 + G T UCEC 62663355 + 62663335 62663375 41 GACTCGGACCTGGGGGATGCCTGGGCCTTCTTCTACAAGTT GACTCGGACCTGGGGGATGCCTGTGCCTTCTTCTACAAGTT < 41bp 0.792154051835544 0.407135943180841 0.7589184 0.3089775 prediction 0.584308103671089 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62663355 chr20:62663358 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_55840 0 0 1 0 2 PRPF6 chr20:62663397 5'GT 62663397 Upstream 40bp
chr3 431150 431150 1 + A T STAD 431146 + 431126 431166 41 TCAGTCAGTGACTCTCTATTCTGGAGAAGACTGTAAGTGAT TCAGTCAGTGACTCTCTATTCTGGTGAAGACTGTAAGTGAT < 41bp 0.792148489915845 0.493540534302484 0.28058952 0.4299145 prediction 0.58429697983169 Functional Loss - CHL1 ENSG00000134121 CDS Human protein_coding chr3:431146 chr3:431150 synonymous SNV . 0 25 hm5C_associated_SNPs_55841 0 0 0 0 1 CHL1 chr3:431157 5'GT 431157 Upstream 8bp
chr2 118577359 118577359 1 + G T LUAD 118577356 + 118577336 118577376 41 GTGAGGTGCCCAGTCTGCCCCTGGGACTGACAGGTAACGTC GTGAGGTGCCCAGTCTGCCCCTGTGACTGACAGGTAACGTC < 41bp 0.792140391277683 0.437384214436256 0.2035658 0.065428644 prediction 0.584280782555366 Functional Loss - DDX18 ENSG00000088205 CDS Human protein_coding chr2:118577356 chr2:118577359 stopgain 0.990 1 24 hm5C_associated_SNPs_55842 0 0 1 0 1 DDX18 chr2:118577368 5'GT 118577368 Upstream 10bp
chr11 130332438 130332438 1 + G T UCEC 130332435 + 130332415 130332455 41 AGCAAGCCCATCTCCCTGCCCGAGGATCTGCCGGGCGCCAG AGCAAGCCCATCTCCCTGCCCGATGATCTGCCGGGCGCCAG < 41bp 0.79213845328057 0.391358583226497 0.8214798 0.31662762 prediction 0.58427690656114 Functional Loss - ADAMTS15 ENSG00000166106 CDS Human protein_coding chr11:130332435 chr11:130332438 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_55843 0 0 0 0 1 ADAMTS15 chr11:130332392 3'AG 130332392 Downstream 47bp
chr1 26440882 26440882 1 + G T UCEC 26440880 + 26440860 26440900 41 GTTGTGTATGAAGCAGTCATCAGAAAGACCTCTGCACGGGT GTTGTGTATGAAGCAGTCATCATAAAGACCTCTGCACGGGT < 41bp 0.839717133622975 0.547609481007192 0.8959031 0.24818534 prediction 0.584215305231566 Functional Loss - PDIK1L ENSG00000175087 CDS Human protein_coding chr1:26440880 chr1:26440882 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_55848 0 0 0 0 1 PDIK1L chr1:26440783 3'AG 26440783 Downstream 100bp
chr14 58874106 58874106 1 + G T ESCA 58874103 + 58874083 58874123 41 TTTTAGTGTGCGAGCAACCACGGGAACTTCTGAAAGTTTTC TTTTAGTGTGCGAGCAACCACGGTAACTTCTGAAAGTTTTC < 41bp 0.890462057594846 0.598361739385139 0.8479824 0.43111724 prediction 0.584200636419414 Functional Loss - TOMM20L ENSG00000196860 CDS Human protein_coding chr14:58874103 chr14:58874106 stopgain 0.969 0 24 hm5C_associated_SNPs_55850 0 0 0 0 2 TOMM20L chr14:58874044 3'AG 58874044 Downstream 63bp
chr14 58874106 58874106 1 + G T ESCA 58874103 + 58874083 58874123 41 TTTTAGTGTGCGAGCAACCACGGGAACTTCTGAAAGTTTTC TTTTAGTGTGCGAGCAACCACGGTAACTTCTGAAAGTTTTC < 41bp 0.890462057594846 0.598361739385139 0.8479824 0.43111724 prediction 0.584200636419414 Functional Loss - TOMM20L ENSG00000196860 CDS Human protein_coding chr14:58874103 chr14:58874106 stopgain 0.969 0 24 hm5C_associated_SNPs_55850 0 0 0 0 2 TOMM20L chr14:58874186 5'GT 58874186 Upstream 81bp
chr16 1720768 1720768 1 + G C HNSC 1720767 + 1720747 1720787 41 CAGCTTGTTGGATGGAAACTCGCGGGACTCATTTGTGTCCA CAGCTTGTTGGATGGAAACTCCCGGGACTCATTTGTGTCCA < 41bp 0.801954850724946 0.509878967516008 0.8909998 0.232676 prediction 0.584151766417876 Functional Loss - CRAMP1 ENSG00000007545 CDS Human protein_coding chr16:1720767 chr16:1720768 synonymous SNV . 0 22 hm5C_associated_SNPs_55851 0 0 1 0 1 CRAMP1 chr16:1720810 5'GT 1720810 Upstream 43bp
chr15 76073359 76073359 1 + G T UCEC 76073356 + 76073336 76073376 41 AATACTCCTTACAGCGTATTCAAGAATTGGAGCGGGCTCTC AATACTCCTTACAGCGTATTCAATAATTGGAGCGGGCTCTC < 41bp 0.792034862174618 0.451075579784583 0.20861313 0.13505104 prediction 0.584069724349236 Functional Loss - MIR4313;UBE2Q2 ENSG00000187812 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:76073356 chr15:76073359 . . 0 24 hm5C_associated_SNPs_55855 0 0 0 0 1 MIR4313;UBE2Q2 chr15:76073306 3'AG 76073306 Downstream 54bp
chr11 111915896 111915896 1 + G T UCEC 111915893 + 111915873 111915913 41 TGTTGTGCCTCCCACAGGTCCTGGAATGGCACCAGTTCCTA TGTTGTGCCTCCCACAGGTCCTGTAATGGCACCAGTTCCTA < 41bp 0.890679976115986 0.598645762690905 0.21872318 0.14868945 prediction 0.584068426850162 Functional Loss - DLAT ENSG00000150768 CDS Human protein_coding chr11:111915893 chr11:111915896 nonsynonymous SNV 0.336 0 24 hm5C_associated_SNPs_55856 0 0 1 0 2 DLAT chr11:111915862 3'AG 111915862 Downstream 35bp
chr11 111915896 111915896 1 + G T UCEC 111915893 + 111915873 111915913 41 TGTTGTGCCTCCCACAGGTCCTGGAATGGCACCAGTTCCTA TGTTGTGCCTCCCACAGGTCCTGTAATGGCACCAGTTCCTA < 41bp 0.890679976115986 0.598645762690905 0.21872318 0.14868945 prediction 0.584068426850162 Functional Loss - DLAT ENSG00000150768 CDS Human protein_coding chr11:111915893 chr11:111915896 nonsynonymous SNV 0.336 0 24 hm5C_associated_SNPs_55856 0 0 1 0 2 DLAT chr11:111915954 5'GT 111915954 Upstream 59bp
chr17 18332295 18332295 1 + G T UCEC 18332293 + 18332273 18332313 41 GCCGACATCAATGGCCCGTGCAGGGTGCTGGATGAGCTGAC GCCGACATCAATGGCCCGTGCATGGTGCTGGATGAGCTGAC < 41bp 0.792032606063807 0.473460432407336 0.8913802 0.40084982 prediction 0.584065212127614 Functional Loss - KRT17P2 ENSG00000186831 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:18332293 chr17:18332295 . . 0 23 hm5C_associated_SNPs_55857 0 0 0 0 1 KRT17P2 chr17:18332389 5'GT 18332389 Upstream 95bp
chrX 48673145 48673145 1 + G C BLCA 48673144 + 48673124 48673164 41 GTCCTGCTGCCAGTCGCCCTCGAGGTCCTGGGGATCTGGGG GTCCTGCTGCCAGTCGCCCTCCAGGTCCTGGGGATCTGGGG < 41bp 0.79232166697773 0.500291451287618 0.9218614 0.61355275 prediction 0.584060431380224 Functional Loss - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48673144 chrX:48673145 nonsynonymous SNV 0.268 3 22 hm5C_associated_SNPs_55858 0 0 1 0 2 HDAC6 chrX:48673082 3'AG 48673082 Downstream 64bp
chrX 48673145 48673145 1 + G C BLCA 48673144 + 48673124 48673164 41 GTCCTGCTGCCAGTCGCCCTCGAGGTCCTGGGGATCTGGGG GTCCTGCTGCCAGTCGCCCTCCAGGTCCTGGGGATCTGGGG < 41bp 0.79232166697773 0.500291451287618 0.9218614 0.61355275 prediction 0.584060431380224 Functional Loss - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48673144 chrX:48673145 nonsynonymous SNV 0.268 3 22 hm5C_associated_SNPs_55858 0 0 1 0 2 HDAC6 chrX:48673147 5'GT 48673147 Upstream 3bp
chrX 19368189 19368189 1 + G T UCEC 19368187 + 19368167 19368207 41 AAGCAGATCAGCTGTATAAACAGAAAATTATTCGTGGTTTC AAGCAGATCAGCTGTATAAACATAAAATTATTCGTGGTTTC < 41bp 0.792024817128301 0.464260102778669 0.6159656 0.33422774 prediction 0.584049634256603 Functional Loss - PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19368187 chrX:19368189 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_55859 0 0 1 0 1 PDHA1 chrX:19368228 5'GT 19368228 Upstream 40bp
chr15 20488861 20488861 1 + G T GBM 20488858 + 20488838 20488878 41 TCTTGTTTCTGTTGGGACTGCTGGGTATAACCGTGCTGTGG TCTTGTTTCTGTTGGGACTGCTGTGTATAACCGTGCTGTGG < 41bp 0.792018659459077 0.441302006717518 0.87508726 0.24512878 prediction 0.584037318918155 Functional Loss - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20488858 chr15:20488861 . . 0 24 hm5C_associated_SNPs_55861 0 0 0 1 1 CHEK2P2 chr15:20488912 5'GT 20488912 Upstream 52bp
chr15 20488860 20488860 1 + G T LUSC 20488858 + 20488838 20488878 41 TCTTGTTTCTGTTGGGACTGCTGGGTATAACCGTGCTGTGG TCTTGTTTCTGTTGGGACTGCTTGGTATAACCGTGCTGTGG < 41bp 0.792018659459077 0.489078405417322 0.87508726 0.34898496 prediction 0.584037318918155 Functional Loss - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20488858 chr15:20488860 . . 0 23 hm5C_associated_SNPs_55862 0 0 0 0 1 CHEK2P2 chr15:20488912 5'GT 20488912 Upstream 53bp
chr5 148977366 148977366 1 + A T LUAD 148977362 + 148977342 148977382 41 CATGGAGCCGACGAGCCATCCTCCAGGTCAGGGAGTCCGGA CATGGAGCCGACGAGCCATCCTCCTGGTCAGGGAGTCCGGA < 41bp 0.79201543445239 0.466550990020424 0.90336126 0.13810486 prediction 0.58403086890478 Functional Loss - ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:148977362 chr5:148977366 nonsynonymous SNV 0.570 1 25 hm5C_associated_SNPs_55863 0 0 0 0 1 ARHGEF37 chr5:148977322 3'AG 148977322 Downstream 45bp
chr17 21203937 21203937 1 + G T UCEC 21203935 + 21203915 21203955 41 ATGGGGTGGTAGAGAAGGTGCGGCACGCCCAGAGCGGCACC ATGGGGTGGTAGAGAAGGTGCGTCACGCCCAGAGCGGCACC < 41bp 0.851077534617984 0.559065389622826 0.6228409 0.31060037 prediction 0.584024289990314 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21203935 chr17:21203937 synonymous SNV . 0 23 hm5C_associated_SNPs_55864 0 0 1 0 2 MAP2K3 chr17:21203857 3'AG 21203857 Downstream 81bp
chr17 21203937 21203937 1 + G T UCEC 21203935 + 21203915 21203955 41 ATGGGGTGGTAGAGAAGGTGCGGCACGCCCAGAGCGGCACC ATGGGGTGGTAGAGAAGGTGCGTCACGCCCAGAGCGGCACC < 41bp 0.851077534617984 0.559065389622826 0.6228409 0.31060037 prediction 0.584024289990314 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21203935 chr17:21203937 synonymous SNV . 0 23 hm5C_associated_SNPs_55864 0 0 1 0 2 MAP2K3 chr17:21203970 5'GT 21203970 Upstream 34bp
chr14 23944502 23944502 1 + G T LUAD 23944500 + 23944480 23944520 41 GACATGATGCAGTTTTGAGACTGGTGGAGATTCGCACGGTA GACATGATGCAGTTTTGAGACTTGTGGAGATTCGCACGGTA < 41bp 0.825323568173894 0.533319694730687 0.28086895 0.22018519 prediction 0.584007746886414 Functional Loss - NGDN ENSG00000129460 CDS Human protein_coding chr14:23944500 chr14:23944502 synonymous SNV . 0 23 hm5C_associated_SNPs_55865 0 0 1 0 1 NGDN chr14:23944517 5'GT 23944517 Upstream 16bp
chr6 108768448 108768448 1 + G T LUSC 108768445 + 108768425 108768465 41 TAATACAGTCCAGCTAGATTCTGGGATAGATTACCGGAAAA TAATACAGTCCAGCTAGATTCTGTGATAGATTACCGGAAAA < 41bp 0.791986454764873 0.427525932785879 0.8760135 0.17719847 prediction 0.583972909529745 Functional Loss - AFG1L ENSG00000135537 CDS Human protein_coding chr6:108768445 chr6:108768448 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_55868 0 0 0 0 2 AFG1L chr6:108768417 3'AG 108768417 Downstream 32bp
chr6 108768448 108768448 1 + G T LUSC 108768445 + 108768425 108768465 41 TAATACAGTCCAGCTAGATTCTGGGATAGATTACCGGAAAA TAATACAGTCCAGCTAGATTCTGTGATAGATTACCGGAAAA < 41bp 0.791986454764873 0.427525932785879 0.8760135 0.17719847 prediction 0.583972909529745 Functional Loss - AFG1L ENSG00000135537 CDS Human protein_coding chr6:108768445 chr6:108768448 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_55868 0 0 0 0 2 AFG1L chr6:108768499 5'GT 108768499 Upstream 52bp
chr11 47298359 47298359 1 + A C COAD 47298355 + 47298335 47298375 41 TCGTGGCAATGATCTACCCACTGGAGTATATGTTTCCTGTC TCGTGGCAATGATCTACCCACTGGCGTATATGTTTCCTGTC < 41bp 0.791974627745159 0.401831165323534 0.115088016 0.14514688 prediction 0.583949255490318 Functional Loss - MADD ENSG00000110514 CDS Human protein_coding chr11:47298355 chr11:47298359 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_55870 0 0 1 0 2 MADD chr11:47298283 3'AG 47298283 Downstream 77bp
chr11 47298359 47298359 1 + A C COAD 47298355 + 47298335 47298375 41 TCGTGGCAATGATCTACCCACTGGAGTATATGTTTCCTGTC TCGTGGCAATGATCTACCCACTGGCGTATATGTTTCCTGTC < 41bp 0.791974627745159 0.401831165323534 0.115088016 0.14514688 prediction 0.583949255490318 Functional Loss - MADD ENSG00000110514 CDS Human protein_coding chr11:47298355 chr11:47298359 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_55870 0 0 1 0 2 MADD chr11:47298414 5'GT 47298414 Upstream 56bp
chr19 13058723 13058723 1 + G T SARC 13058720 + 13058700 13058740 41 TCGTGATGCCTTCCCCGTGGCTGGACAGAAACTCATCTATG TCGTGATGCCTTCCCCGTGGCTGTACAGAAACTCATCTATG < 41bp 0.79196825879015 0.412230588209189 0.36293602 0.1496171 prediction 0.5839365175803 Functional Loss - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13058720 chr19:13058723 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55871 0 0 1 0 1 RAD23A chr19:13058662 3'AG 13058662 Downstream 62bp
chr1 155023119 155023119 1 - C A LIHC 155023121 - 155023101 155023141 41 GGCGCAGGAGCGGGCAGCCGCGGTGCAGGATATCCGCCAGC GGCGCAGGAGCGGGCAGCCGCGTTGCAGGATATCCGCCAGC < 41bp 0.791965212645275 0.463439366849019 0.8944026 0.47524518 prediction 0.583930425290551 Functional Loss - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155023121 chr1:155023119 nonsynonymous SNV 0.389 0 23 hm5C_associated_SNPs_55872 0 0 1 0 1 DCST1-AS1 chr1:155023083 5'GT 155023083 Upstream 37bp
chr22 24911338 24911338 1 + G T UCEC 24911336 + 24911316 24911356 41 TCGGCCACGATAGGAGCACTCAGGTCACTCAGTTGGTGGGG TCGGCCACGATAGGAGCACTCATGTCACTCAGTTGGTGGGG < 41bp 0.791956479754976 0.443740889958676 0.9082487 0.37150714 prediction 0.583912959509952 Functional Loss - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24911336 chr22:24911338 nonsynonymous SNV 0.454 5 23 hm5C_associated_SNPs_55873 0 0 0 0 1 UPB1 chr22:24911338 5'GT 24911338 Upstream 1bp
chr4 36245791 36245791 1 + G T rs560759725 36245789 + 36245769 36245809 41 GGCCCAGCCTTCCCGAGGCCCCGGGTACTCGCCTTGCGCTC GGCCCAGCCTTCCCGAGGCCCCTGGTACTCGCCTTGCGCTC < 41bp 0.791943738992929 0.469210150248202 0.6092676 0.31676996 prediction 0.583887477985858 Functional Loss - LOC439933 ENSG00000247193 ncRNA_exonic Human antisense chr4:36245789 chr4:36245791 . . 0 23 hm5C_associated_SNPs_55875 0 0 0 0 1 LOC439933 chr4:36245833 5'GT 36245833 Upstream 43bp
chr3 157155390 157155390 1 + G T LUSC 157155388 + 157155368 157155408 41 CGCAGATGAGAGAGCGCATGCTGCTGCAAGCCACGGACGAC CGCAGATGAGAGAGCGCATGCTTCTGCAAGCCACGGACGAC < 41bp 0.791931760262719 0.460388564008141 0.12018666 0.12450823 prediction 0.583863520525437 Functional Loss - PTX3 ENSG00000163661 CDS Human protein_coding chr3:157155388 chr3:157155390 synonymous SNV . 0 23 hm5C_associated_SNPs_55878 0 0 0 0 1 PTX3 chr3:157155302 3'AG 157155302 Downstream 89bp
chrX 140983192 140983192 1 + A T LUAD 140983188 + 140983168 140983208 41 CGTCTTAGACCTGGCCAATCCTCAAGGTAAGGGCCCTAAGG CGTCTTAGACCTGGCCAATCCTCATGGTAAGGGCCCTAAGG < 41bp 0.791913070414829 0.482306863944803 0.21122587 0.19213489 prediction 0.583826140829658 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140983188 chrX:140983192 nonsynonymous SNV 0.016 2 25 hm5C_associated_SNPs_55879 0 0 0 0 1 MAGEC3 chrX:140983193 5'GT 140983193 Upstream 2bp
chr3 25833280 25833280 1 + A T GBM 25833276 + 25833256 25833296 41 TCCAGAGCCCGGGCTCTGAGCACAAACTCAGATCCCAAGTT TCCAGAGCCCGGGCTCTGAGCACATACTCAGATCCCAAGTT < 41bp 0.791902585602228 0.470933037486867 0.16492379 0.25281337 prediction 0.583805171204456 Functional Loss - OXSM ENSG00000151093 CDS Human protein_coding chr3:25833276 chr3:25833280 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_55882 0 0 1 0 1 OXSM chr3:25833261 3'AG 25833261 Downstream 20bp
chr2 120776812 120776812 1 + A T LUAD 120776808 + 120776788 120776828 41 TCACGTGTCGGGTGTCCCTTCTGGATGGTACTGATGTTAGT TCACGTGTCGGGTGTCCCTTCTGGTTGGTACTGATGTTAGT < 41bp 0.823450974272147 0.531551076774709 0.16257957 0.12659827 prediction 0.583799794994877 Functional Loss - EPB41L5 ENSG00000115109 CDS Human protein_coding chr2:120776808 chr2:120776812 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_55884 0 0 1 0 1 EPB41L5 chr2:120776840 5'GT 120776840 Upstream 29bp
chr11 44075044 44075044 1 + A C BLCA 44075040 + 44075020 44075060 41 CAGACTCACTGATGAAATACCTGGAATTTGCCAAGAGGTAT CAGACTCACTGATGAAATACCTGGCATTTGCCAAGAGGTAT < 41bp 0.791893678965148 0.389053849939827 0.33739793 0.3707478 prediction 0.583787357930295 Functional Loss - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44075040 chr11:44075044 nonsynonymous SNV 0.029 0 25 hm5C_associated_SNPs_55885 0 0 0 0 2 ACCSL chr11:44074956 3'AG 44074956 Downstream 89bp
chr11 44075044 44075044 1 + A C BLCA 44075040 + 44075020 44075060 41 CAGACTCACTGATGAAATACCTGGAATTTGCCAAGAGGTAT CAGACTCACTGATGAAATACCTGGCATTTGCCAAGAGGTAT < 41bp 0.791893678965148 0.389053849939827 0.33739793 0.3707478 prediction 0.583787357930295 Functional Loss - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44075040 chr11:44075044 nonsynonymous SNV 0.029 0 25 hm5C_associated_SNPs_55885 0 0 0 0 2 ACCSL chr11:44075056 5'GT 44075056 Upstream 13bp
chr11 44075043 44075043 1 + G T UCEC 44075040 + 44075020 44075060 41 CAGACTCACTGATGAAATACCTGGAATTTGCCAAGAGGTAT CAGACTCACTGATGAAATACCTGTAATTTGCCAAGAGGTAT < 41bp 0.791893678965148 0.421995757759055 0.33739793 0.20165154 prediction 0.583787357930295 Functional Loss - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44075040 chr11:44075043 stopgain 0.027 0 24 hm5C_associated_SNPs_55886 0 0 0 0 2 ACCSL chr11:44074956 3'AG 44074956 Downstream 88bp
chr11 44075043 44075043 1 + G T UCEC 44075040 + 44075020 44075060 41 CAGACTCACTGATGAAATACCTGGAATTTGCCAAGAGGTAT CAGACTCACTGATGAAATACCTGTAATTTGCCAAGAGGTAT < 41bp 0.791893678965148 0.421995757759055 0.33739793 0.20165154 prediction 0.583787357930295 Functional Loss - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44075040 chr11:44075043 stopgain 0.027 0 24 hm5C_associated_SNPs_55886 0 0 0 0 2 ACCSL chr11:44075056 5'GT 44075056 Upstream 14bp
chr5 81606013 81606013 1 + A C STAD 81606009 + 81605989 81606029 41 CTTGGTGATGCTGGAAACCCCAGAAGTCTTGCTATAAGGTA CTTGGTGATGCTGGAAACCCCAGACGTCTTGCTATAAGGTA < 41bp 0.791852482750831 0.401169969107391 0.7386253 0.5781706 prediction 0.583704965501662 Functional Loss - ATP6AP1L ENSG00000205464 CDS Human protein_coding chr5:81606009 chr5:81606013 nonsynonymous SNV 0.896 1 25 hm5C_associated_SNPs_55889 0 0 1 0 2 ATP6AP1L chr5:81605976 3'AG 81605976 Downstream 38bp
chr5 81606013 81606013 1 + A C STAD 81606009 + 81605989 81606029 41 CTTGGTGATGCTGGAAACCCCAGAAGTCTTGCTATAAGGTA CTTGGTGATGCTGGAAACCCCAGACGTCTTGCTATAAGGTA < 41bp 0.791852482750831 0.401169969107391 0.7386253 0.5781706 prediction 0.583704965501662 Functional Loss - ATP6AP1L ENSG00000205464 CDS Human protein_coding chr5:81606009 chr5:81606013 nonsynonymous SNV 0.896 1 25 hm5C_associated_SNPs_55889 0 0 1 0 2 ATP6AP1L chr5:81606026 5'GT 81606026 Upstream 14bp
chr6 170667405 170667405 1 + A T PRAD 170667401 + 170667381 170667421 41 CCACCTCGCAGCTTGTAAATCTACAGGTACAGACGTGACCA CCACCTCGCAGCTTGTAAATCTACTGGTACAGACGTGACCA < 41bp 0.841072243943925 0.549231999316892 0.38779595 0.15424791 prediction 0.583680489254066 Functional Loss - FAM120B ENSG00000112584 CDS Human protein_coding chr6:170667401 chr6:170667405 nonsynonymous SNV 0.692 2 25 hm5C_associated_SNPs_55891 0 0 1 0 2 FAM120B chr6:170667314 3'AG 170667314 Downstream 92bp
chr6 170667405 170667405 1 + A T PRAD 170667401 + 170667381 170667421 41 CCACCTCGCAGCTTGTAAATCTACAGGTACAGACGTGACCA CCACCTCGCAGCTTGTAAATCTACTGGTACAGACGTGACCA < 41bp 0.841072243943925 0.549231999316892 0.38779595 0.15424791 prediction 0.583680489254066 Functional Loss - FAM120B ENSG00000112584 CDS Human protein_coding chr6:170667401 chr6:170667405 nonsynonymous SNV 0.692 2 25 hm5C_associated_SNPs_55891 0 0 1 0 2 FAM120B chr6:170667406 5'GT 170667406 Upstream 2bp
chr5 1815984 1815984 1 + G T LUSC 1815982 + 1815962 1816002 41 CAGGACAAAGAAACAAAAACCGGCACATGCGGTTACTGTGG CAGGACAAAGAAACAAAAACCGTCACATGCGGTTACTGTGG < 41bp 0.80966570702785 0.517825966941162 0.7686202 0.5960553 prediction 0.583679480173376 Functional Loss - NDUFS6 ENSG00000145494 CDS Human protein_coding chr5:1815982 chr5:1815984 nonsynonymous SNV 0.162 4 23 hm5C_associated_SNPs_55892 0 0 1 0 1 NDUFS6 chr5:1815965 3'AG 1815965 Downstream 20bp
chr12 85694954 85694954 1 + G T UCEC 85694952 + 85694932 85694972 41 GATTCAGAACAATTTGTGGGCAGGAAATGCAAGTGGTGGTT GATTCAGAACAATTTGTGGGCATGAAATGCAAGTGGTGGTT < 41bp 0.795238261235761 0.503433335278167 0.5938358 0.2253823 prediction 0.583609851915189 Functional Loss - ALX1 ENSG00000180318 CDS Human protein_coding chr12:85694952 chr12:85694954 stopgain 1.000 1 23 hm5C_associated_SNPs_55899 0 0 1 0 1 ALX1 chr12:85694933 3'AG 85694933 Downstream 22bp
chr22 44514932 44514932 1 + G T COAD 44514929 + 44514909 44514949 41 CTCCTGCAGGTCCTCCTCGACTGGATTAATGACGTGCTGGT CTCCTGCAGGTCCTCCTCGACTGTATTAATGACGTGCTGGT < 41bp 0.890346428149393 0.598542895642202 0.3764379 0.1520572 prediction 0.583607065014381 Functional Loss - PARVB ENSG00000188677 CDS Human protein_coding chr22:44514929 chr22:44514932 nonsynonymous SNV 0.070 5 24 hm5C_associated_SNPs_55900 0 0 1 0 2 PARVB chr22:44514918 3'AG 44514918 Downstream 15bp
chr22 44514932 44514932 1 + G T COAD 44514929 + 44514909 44514949 41 CTCCTGCAGGTCCTCCTCGACTGGATTAATGACGTGCTGGT CTCCTGCAGGTCCTCCTCGACTGTATTAATGACGTGCTGGT < 41bp 0.890346428149393 0.598542895642202 0.3764379 0.1520572 prediction 0.583607065014381 Functional Loss - PARVB ENSG00000188677 CDS Human protein_coding chr22:44514929 chr22:44514932 nonsynonymous SNV 0.070 5 24 hm5C_associated_SNPs_55900 0 0 1 0 2 PARVB chr22:44515020 5'GT 44515020 Upstream 89bp
chr2 220144591 220144591 1 + A T HNSC 220144587 + 220144567 220144607 41 CTACGAGATCCTAGACGTGCCGCGAAGTGCGTCCGCTGATG CTACGAGATCCTAGACGTGCCGCGTAGTGCGTCCGCTGATG < 41bp 0.82732170928985 0.535523470399989 0.2901523 0.05815789 prediction 0.583596477779722 Functional Loss - DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220144587 chr2:220144591 synonymous SNV . 0 25 hm5C_associated_SNPs_55901 0 0 1 0 2 DNAJB2 chr2:220144520 3'AG 220144520 Downstream 72bp
chr2 220144591 220144591 1 + A T HNSC 220144587 + 220144567 220144607 41 CTACGAGATCCTAGACGTGCCGCGAAGTGCGTCCGCTGATG CTACGAGATCCTAGACGTGCCGCGTAGTGCGTCCGCTGATG < 41bp 0.82732170928985 0.535523470399989 0.2901523 0.05815789 prediction 0.583596477779722 Functional Loss - DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220144587 chr2:220144591 synonymous SNV . 0 25 hm5C_associated_SNPs_55901 0 0 1 0 2 DNAJB2 chr2:220144620 5'GT 220144620 Upstream 30bp
chr21 47409557 47409557 1 + G T UCEC 47409555 + 47409535 47409575 41 ACCTCGGACCTGTTGGGTACCAGGGAATGAAGGTACGTGCC ACCTCGGACCTGTTGGGTACCATGGAATGAAGGTACGTGCC < 41bp 0.857490780038165 0.565706089622211 0.89766526 0.25376529 prediction 0.583569380831908 Functional Loss - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47409555 chr21:47409557 nonsynonymous SNV 0.983 4 23 hm5C_associated_SNPs_55902 0 0 1 0 2 COL6A1 chr21:47409522 3'AG 47409522 Downstream 36bp
chr21 47409557 47409557 1 + G T UCEC 47409555 + 47409535 47409575 41 ACCTCGGACCTGTTGGGTACCAGGGAATGAAGGTACGTGCC ACCTCGGACCTGTTGGGTACCATGGAATGAAGGTACGTGCC < 41bp 0.857490780038165 0.565706089622211 0.89766526 0.25376529 prediction 0.583569380831908 Functional Loss - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47409555 chr21:47409557 nonsynonymous SNV 0.983 4 23 hm5C_associated_SNPs_55902 0 0 1 0 2 COL6A1 chr21:47409566 5'GT 47409566 Upstream 10bp
chr17 33476027 33476027 1 + A T LUSC 33476023 + 33476003 33476043 41 CCAGGCAGCTTCAGATGCCTCCAGAGGTGAGCCCCTCCCAC CCAGGCAGCTTCAGATGCCTCCAGTGGTGAGCCCCTCCCAC < 41bp 0.796716365669854 0.50493972494699 0.932434 0.76288986 prediction 0.583553281445729 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33476023 chr17:33476027 nonsynonymous SNV 0.991 0 25 hm5C_associated_SNPs_55903 0 0 0 0 2 UNC45B chr17:33475992 3'AG 33475992 Downstream 36bp
chr17 33476027 33476027 1 + A T LUSC 33476023 + 33476003 33476043 41 CCAGGCAGCTTCAGATGCCTCCAGAGGTGAGCCCCTCCCAC CCAGGCAGCTTCAGATGCCTCCAGTGGTGAGCCCCTCCCAC < 41bp 0.796716365669854 0.50493972494699 0.932434 0.76288986 prediction 0.583553281445729 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33476023 chr17:33476027 nonsynonymous SNV 0.991 0 25 hm5C_associated_SNPs_55903 0 0 0 0 2 UNC45B chr17:33476028 5'GT 33476028 Upstream 2bp
chr11 68370860 68370860 1 + G T UCEC 68370858 + 68370838 68370878 41 CTCTGACGGAGAGGAGGATGCAGAAAGTACAGACAAGGTAA CTCTGACGGAGAGGAGGATGCATAAAGTACAGACAAGGTAA < 41bp 0.815940357005668 0.524166073667459 0.5611801 0.74318635 prediction 0.583548566676418 Functional Loss - PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68370858 chr11:68370860 stopgain 0.995 0 23 hm5C_associated_SNPs_55905 0 0 1 0 1 PPP6R3 chr11:68370810 3'AG 68370810 Downstream 51bp
chr8 85441789 85441789 1 + G T ACC 85441786 + 85441766 85441806 41 TGCAGTGGCTGGAGAAAATGCCAGAGTCATCGCCGGCCAAC TGCAGTGGCTGGAGAAAATGCCATAGTCATCGCCGGCCAAC < 41bp 0.791764635322962 0.497425461316756 0.88828707 0.2790693 prediction 0.583529270645924 Functional Loss - RALYL ENSG00000184672 CDS Human protein_coding chr8:85441786 chr8:85441789 nonsynonymous SNV 0.927 3 24 hm5C_associated_SNPs_55907 0 0 0 0 1 RALYL chr8:85441812 5'GT 85441812 Upstream 24bp
chr16 66887373 66887373 1 + G C UVM 66887372 + 66887352 66887392 41 CACCACAGCCACTGAAGGGCCGCGTGGTAAAGGCCTCCTTC CACCACAGCCACTGAAGGGCCCCGTGGTAAAGGCCTCCTTC < 41bp 0.806660988211899 0.514922575464267 0.19020939 0.13845909 prediction 0.583476825495264 Functional Loss - CA7 ENSG00000168748 CDS Human protein_coding chr16:66887372 chr16:66887373 nonsynonymous SNV 0.977 4 22 hm5C_associated_SNPs_55908 0 0 0 0 1 CA7 chr16:66887279 3'AG 66887279 Downstream 95bp
chr1 33955172 33955172 1 + G T UCEC 33955170 + 33955150 33955190 41 GGAGCTCTGTAAAGACCCCCCAGGAGACGACTGTGGGAACA GGAGCTCTGTAAAGACCCCCCATGAGACGACTGTGGGAACA < 41bp 0.857753430775983 0.566024553180753 0.8631201 0.20452458 prediction 0.583457755190461 Functional Loss - ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33955170 chr1:33955172 stopgain 0.115 0 23 hm5C_associated_SNPs_55911 0 0 0 0 2 ZSCAN20 chr1:33955118 3'AG 33955118 Downstream 55bp
chr1 33955172 33955172 1 + G T UCEC 33955170 + 33955150 33955190 41 GGAGCTCTGTAAAGACCCCCCAGGAGACGACTGTGGGAACA GGAGCTCTGTAAAGACCCCCCATGAGACGACTGTGGGAACA < 41bp 0.857753430775983 0.566024553180753 0.8631201 0.20452458 prediction 0.583457755190461 Functional Loss - ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33955170 chr1:33955172 stopgain 0.115 0 23 hm5C_associated_SNPs_55911 0 0 0 0 2 ZSCAN20 chr1:33955202 5'GT 33955202 Upstream 31bp
chr12 85677595 85677595 1 + G T LUAD 85677592 + 85677572 85677612 41 TCTTTCAGAAAACTCATTACCCGGATGTGTATGTCAGAGAA TCTTTCAGAAAACTCATTACCCGTATGTGTATGTCAGAGAA < 41bp 0.884134074247305 0.592412500711933 0.6989827 0.026406854 prediction 0.583443147070745 Functional Loss - ALX1 ENSG00000180318 CDS Human protein_coding chr12:85677592 chr12:85677595 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_55915 0 0 1 0 1 ALX1 chr12:85677654 5'GT 85677654 Upstream 60bp
chr10 30747044 30747044 1 + G T BRCA 30747042 + 30747022 30747062 41 AGCCCAGAGGTCATCCTGTGCAGGGGCCATTCAACCAAAGC AGCCCAGAGGTCATCCTGTGCATGGGCCATTCAACCAAAGC < 41bp 0.791708969084915 0.446989424040169 0.21401203 0.0077517033 prediction 0.583417938169831 Functional Loss - MAP3K8 ENSG00000107968 CDS Human protein_coding chr10:30747042 chr10:30747044 nonsynonymous SNV 0.950 4 23 hm5C_associated_SNPs_55917 0 0 0 0 1 MAP3K8 chr10:30747013 3'AG 30747013 Downstream 32bp
chr1 32950787 32950787 1 + G T THYM 32950785 + 32950765 32950805 41 TCCCAGGGGCTGCGGCGCTTCGGGCTGTGTGACAGCTGCAC TCCCAGGGGCTGCGGCGCTTCGTGCTGTGTGACAGCTGCAC < 41bp 0.79170575875625 0.466808944079387 0.8606273 0.24769983 prediction 0.583411517512501 Functional Loss - ZBTB8B ENSG00000254553;ENSG00000273274 CDS Human other chr1:32950785 chr1:32950787 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_55918 0 0 0 0 1 ZBTB8B chr1:32950702 3'AG 32950702 Downstream 86bp
chr11 36422835 36422835 1 + G T UCEC 36422833 + 36422813 36422853 41 AGCTCCAGCTCAGCCTGGAACAGGTGAAGGAGGCTGCAGGA AGCTCCAGCTCAGCCTGGAACATGTGAAGGAGGCTGCAGGA < 41bp 0.79170470521659 0.449243209827001 0.90906036 0.77951825 prediction 0.58340941043318 Functional Loss - PRR5L ENSG00000135362 CDS Human protein_coding chr11:36422833 chr11:36422835 nonsynonymous SNV 0.969 4 23 hm5C_associated_SNPs_55919 0 0 0 0 1 PRR5L chr11:36422835 5'GT 36422835 Upstream 1bp
chr2 203817371 203817371 1 + G T UCEC 203817369 + 203817349 203817389 41 TGGCACAAGTGATTATACCTCAGGGGCAACTTGTGGATGTG TGGCACAAGTGATTATACCTCATGGGCAACTTGTGGATGTG < 41bp 0.841678614275661 0.549976738554758 0.9292222 0.17044121 prediction 0.583403751441808 Functional Loss - CARF ENSG00000138380 CDS Human protein_coding chr2:203817369 chr2:203817371 nonsynonymous SNV 0.802 3 23 hm5C_associated_SNPs_55920 0 0 0 2 2 CARF chr2:203817282 3'AG 203817282 Downstream 90bp
chr2 203817371 203817371 1 + G T UCEC 203817369 + 203817349 203817389 41 TGGCACAAGTGATTATACCTCAGGGGCAACTTGTGGATGTG TGGCACAAGTGATTATACCTCATGGGCAACTTGTGGATGTG < 41bp 0.841678614275661 0.549976738554758 0.9292222 0.17044121 prediction 0.583403751441808 Functional Loss - CARF ENSG00000138380 CDS Human protein_coding chr2:203817369 chr2:203817371 nonsynonymous SNV 0.802 3 23 hm5C_associated_SNPs_55920 0 0 0 2 2 CARF chr2:203817402 5'GT 203817402 Upstream 32bp
chr2 169684725 169684725 1 + G T ESCA 169684723 + 169684703 169684743 41 GAATGAAATCCACAGCGGACCTGCATCAGTGAGTTCTCCCA GAATGAAATCCACAGCGGACCTTCATCAGTGAGTTCTCCCA < 41bp 0.79168115844214 0.468286013109865 0.2143518 0.12405047 prediction 0.58336231688428 Functional Loss - NOSTRIN ENSG00000163072 CDS Human protein_coding chr2:169684723 chr2:169684725 synonymous SNV . 0 23 hm5C_associated_SNPs_55922 0 0 1 0 2 NOSTRIN chr2:169684668 3'AG 169684668 Downstream 58bp
chr2 169684725 169684725 1 + G T ESCA 169684723 + 169684703 169684743 41 GAATGAAATCCACAGCGGACCTGCATCAGTGAGTTCTCCCA GAATGAAATCCACAGCGGACCTTCATCAGTGAGTTCTCCCA < 41bp 0.79168115844214 0.468286013109865 0.2143518 0.12405047 prediction 0.58336231688428 Functional Loss - NOSTRIN ENSG00000163072 CDS Human protein_coding chr2:169684723 chr2:169684725 synonymous SNV . 0 23 hm5C_associated_SNPs_55922 0 0 1 0 2 NOSTRIN chr2:169684730 5'GT 169684730 Upstream 6bp
chr19 18304786 18304786 1 + G T COAD 18304783 + 18304763 18304803 41 CGAGGCTTCCCAAATGTCCTCAAGAAGGTCCTCGTGGATCA CGAGGCTTCCCAAATGTCCTCAATAAGGTCCTCGTGGATCA < 41bp 0.884170066562263 0.592526639956466 0.15644306 0.05119455 prediction 0.583286853211594 Functional Loss - MPV17L2 ENSG00000254858 CDS Human protein_coding chr19:18304783 chr19:18304786 nonsynonymous SNV 0.420 2 24 hm5C_associated_SNPs_55926 0 0 1 0 1 MPV17L2 chr19:18304844 5'GT 18304844 Upstream 59bp
chr1 244528024 244528024 1 + G T COAD 244528021 + 244528001 244528041 41 TCATGACTGCCATCCGACTACGAGAATTTATTGAGCGTCGC TCATGACTGCCATCCGACTACGATAATTTATTGAGCGTCGC < 41bp 0.885142940863756 0.593501324519757 0.120904714 0.047049135 prediction 0.583283232687998 Functional Loss - C1orf100 ENSG00000173728 CDS Human protein_coding chr1:244528021 chr1:244528024 stopgain 0.998 0 24 hm5C_associated_SNPs_55927 0 0 0 0 2 C1orf100 chr1:244527990 3'AG 244527990 Downstream 35bp
chr1 244528024 244528024 1 + G T COAD 244528021 + 244528001 244528041 41 TCATGACTGCCATCCGACTACGAGAATTTATTGAGCGTCGC TCATGACTGCCATCCGACTACGATAATTTATTGAGCGTCGC < 41bp 0.885142940863756 0.593501324519757 0.120904714 0.047049135 prediction 0.583283232687998 Functional Loss - C1orf100 ENSG00000173728 CDS Human protein_coding chr1:244528021 chr1:244528024 stopgain 0.998 0 24 hm5C_associated_SNPs_55927 0 0 0 0 2 C1orf100 chr1:244528058 5'GT 244528058 Upstream 35bp
chr3 190120151 190120151 1 + G T LIHC 190120149 + 190120129 190120169 41 AGCACAAAATGCCGAGGCCTCTGGTGGGAATGCGTCACAAA AGCACAAAATGCCGAGGCCTCTTGTGGGAATGCGTCACAAA < 41bp 0.791619411889526 0.464785157627635 0.11844626 0.023456842 prediction 0.583238823779052 Functional Loss - CLDN16 ENSG00000113946 CDS Human protein_coding chr3:190120149 chr3:190120151 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_55928 0 0 0 0 2 CLDN16 chr3:190120126 3'AG 190120126 Downstream 26bp
chr3 190120151 190120151 1 + G T LIHC 190120149 + 190120129 190120169 41 AGCACAAAATGCCGAGGCCTCTGGTGGGAATGCGTCACAAA AGCACAAAATGCCGAGGCCTCTTGTGGGAATGCGTCACAAA < 41bp 0.791619411889526 0.464785157627635 0.11844626 0.023456842 prediction 0.583238823779052 Functional Loss - CLDN16 ENSG00000113946 CDS Human protein_coding chr3:190120149 chr3:190120151 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_55928 0 0 0 0 2 CLDN16 chr3:190120228 5'GT 190120228 Upstream 78bp
chr17 27068496 27068496 1 + G T LUSC 27068494 + 27068474 27068514 41 GGGAAGGAGGGATGAGGATGCCGGACTCCCTCGGCCAGTGC GGGAAGGAGGGATGAGGATGCCTGACTCCCTCGGCCAGTGC < 41bp 0.85137197201567 0.559754720719222 0.77149177 0.36320287 prediction 0.583234502592895 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27068494 chr17:27068496 stopgain 0.733 1 23 hm5C_associated_SNPs_55929 0 0 1 0 2 NEK8 chr17:27068431 3'AG 27068431 Downstream 66bp
chr17 27068496 27068496 1 + G T LUSC 27068494 + 27068474 27068514 41 GGGAAGGAGGGATGAGGATGCCGGACTCCCTCGGCCAGTGC GGGAAGGAGGGATGAGGATGCCTGACTCCCTCGGCCAGTGC < 41bp 0.85137197201567 0.559754720719222 0.77149177 0.36320287 prediction 0.583234502592895 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27068494 chr17:27068496 stopgain 0.733 1 23 hm5C_associated_SNPs_55929 0 0 1 0 2 NEK8 chr17:27068589 5'GT 27068589 Upstream 94bp
chr20 1099429 1099429 1 + G T OV 1099426 + 1099406 1099446 41 CGCGGGCGCTCATGGCGGGCCTGGAGGTACTGTTCGCATCG CGCGGGCGCTCATGGCGGGCCTGTAGGTACTGTTCGCATCG < 41bp 0.88255798333621 0.590945618875387 0.5837277 0.2624695 prediction 0.583224728921647 Functional Loss - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1099426 chr20:1099429 stopgain 0.848 1 24 hm5C_associated_SNPs_55930 0 0 1 0 1 PSMF1 chr20:1099396 3'AG 1099396 Downstream 34bp
chr12 53646693 53646693 1 + G C PRAD 53646692 + 53646672 53646712 41 GGCTGGAACTGTCAAGATGCCGGGCTAAACCCCCTGGAAGG GGCTGGAACTGTCAAGATGCCCGGCTAAACCCCCTGGAAGG < 41bp 0.7915874154162 0.494141101277538 0.8341426 0.44931102 prediction 0.5831748308324 Functional Loss - MFSD5 ENSG00000182544 CDS Human protein_coding chr12:53646692 chr12:53646693 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_55933 0 0 1 0 1 MFSD5 chr12:53646602 3'AG 53646602 Downstream 92bp
chr18 14763729 14763729 1 + G T LUAD 14763727 + 14763707 14763747 41 TGATGAGGCTGCACCCTTGGCGGAAAGAACACCTGACACGG TGATGAGGCTGCACCCTTGGCGTAAAGAACACCTGACACGG < 41bp 0.791578881622714 0.469511596718778 0.25879842 0.013714343 prediction 0.583157763245428 Functional Loss - ANKRD30B ENSG00000180777 CDS Human protein_coding chr18:14763727 chr18:14763729 stopgain 0.003 0 23 hm5C_associated_SNPs_55935 0 0 0 0 1 ANKRD30B chr18:14763685 3'AG 14763685 Downstream 45bp
chr8 39845419 39845419 1 + G T UCEC 39845416 + 39845396 39845436 41 GGAGACCATCATCTCATTTCCTGGGGGAGAGAGCCTGCATG GGAGACCATCATCTCATTTCCTGTGGGAGAGAGCCTGCATG < 41bp 0.79157836940338 0.406937875459568 0.8764603 0.23427612 prediction 0.58315673880676 Functional Loss - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39845416 chr8:39845419 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_55936 0 0 0 0 2 IDO2 chr8:39845390 3'AG 39845390 Downstream 30bp
chr8 39845419 39845419 1 + G T UCEC 39845416 + 39845396 39845436 41 GGAGACCATCATCTCATTTCCTGGGGGAGAGAGCCTGCATG GGAGACCATCATCTCATTTCCTGTGGGAGAGAGCCTGCATG < 41bp 0.79157836940338 0.406937875459568 0.8764603 0.23427612 prediction 0.58315673880676 Functional Loss - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39845416 chr8:39845419 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_55936 0 0 0 0 2 IDO2 chr8:39845489 5'GT 39845489 Upstream 71bp
chr22 50926723 50926723 1 + G T KIRP 50926720 + 50926700 50926740 41 CCAGACTGGTTCCACCTCGTCGGGCTCCTGCACGACCTGGG CCAGACTGGTTCCACCTCGTCGGTCTCCTGCACGACCTGGG < 41bp 0.791503637211798 0.392783051980176 0.8792255 0.16324127 prediction 0.583007274423595 Functional Loss - MIOX ENSG00000100253 CDS Human protein_coding chr22:50926720 chr22:50926723 nonsynonymous SNV 0.108 2 24 hm5C_associated_SNPs_55942 0 0 0 0 3 MIOX chr22:50926672 3'AG 50926672 Downstream 52bp
chr22 50926723 50926723 1 + G T KIRP 50926720 + 50926700 50926740 41 CCAGACTGGTTCCACCTCGTCGGGCTCCTGCACGACCTGGG CCAGACTGGTTCCACCTCGTCGGTCTCCTGCACGACCTGGG < 41bp 0.791503637211798 0.392783051980176 0.8792255 0.16324127 prediction 0.583007274423595 Functional Loss - MIOX ENSG00000100253 CDS Human protein_coding chr22:50926720 chr22:50926723 nonsynonymous SNV 0.108 2 24 hm5C_associated_SNPs_55942 0 0 0 0 3 MIOX chr22:50926704 3'AG 50926704 Downstream 20bp
chr22 50926723 50926723 1 + G T KIRP 50926720 + 50926700 50926740 41 CCAGACTGGTTCCACCTCGTCGGGCTCCTGCACGACCTGGG CCAGACTGGTTCCACCTCGTCGGTCTCCTGCACGACCTGGG < 41bp 0.791503637211798 0.392783051980176 0.8792255 0.16324127 prediction 0.583007274423595 Functional Loss - MIOX ENSG00000100253 CDS Human protein_coding chr22:50926720 chr22:50926723 nonsynonymous SNV 0.108 2 24 hm5C_associated_SNPs_55942 0 0 0 0 3 MIOX chr22:50926771 5'GT 50926771 Upstream 49bp
chr6 88182724 88182724 1 + G T LUAD 88182721 + 88182701 88182741 41 GCGGGGGGCTGTCGGGGAACCATGGCTGCCCCGAGAGGTGA GCGGGGGGCTGTCGGGGAACCATTGCTGCCCCGAGAGGTGA < 41bp 0.864522660928831 0.573071198960308 0.8733214 0.6535584 prediction 0.582902923937044 Functional Loss - SLC35A1 ENSG00000164414 CDS Human protein_coding chr6:88182721 chr6:88182724 nonsynonymous SNV 0.955 0 24 hm5C_associated_SNPs_55952 0 0 1 0 1 SLC35A1 chr6:88182737 5'GT 88182737 Upstream 14bp
chr4 39409343 39409343 1 + A T LIHC 39409339 + 39409319 39409359 41 TGGGACAGGTATGCATGCCCCTGGAGAGAAGGGAAATTTAG TGGGACAGGTATGCATGCCCCTGGTGAGAAGGGAAATTTAG < 41bp 0.791445376047677 0.486120707920702 0.24758023 0.30205417 prediction 0.582890752095355 Functional Loss - KLB ENSG00000134962 CDS Human protein_coding chr4:39409339 chr4:39409343 synonymous SNV . 0 25 hm5C_associated_SNPs_55955 0 0 1 0 1 KLB chr4:39409394 5'GT 39409394 Upstream 52bp
chr19 17628198 17628198 1 + G T PAAD 17628196 + 17628176 17628216 41 TCCCAGACCACCCCCTCCTACAGGTGAGCACACCAATGCGG TCCCAGACCACCCCCTCCTACATGTGAGCACACCAATGCGG < 41bp 0.791429073474852 0.453756242063279 0.4461513 0.31972337 prediction 0.582858146949704 Functional Loss - PGLS ENSG00000130313 CDS Human protein_coding chr19:17628196 chr19:17628198 nonsynonymous SNV 0.952 4 23 hm5C_associated_SNPs_55957 0 0 1 0 1 PGLS chr19:17628198 5'GT 17628198 Upstream 1bp
chr3 136012687 136012687 1 + G T UCEC 136012684 + 136012664 136012704 41 CAGGAGGAGCTCGGTGGTGCCAAGACCCACACCACCATGTC CAGGAGGAGCTCGGTGGTGCCAATACCCACACCACCATGTC < 41bp 0.791428153186095 0.410075218075043 0.36351377 0.17696053 prediction 0.58285630637219 Functional Loss - PCCB ENSG00000114054 CDS Human protein_coding chr3:136012684 chr3:136012687 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_55958 0 0 1 0 2 PCCB chr3:136012598 3'AG 136012598 Downstream 90bp
chr3 136012687 136012687 1 + G T UCEC 136012684 + 136012664 136012704 41 CAGGAGGAGCTCGGTGGTGCCAAGACCCACACCACCATGTC CAGGAGGAGCTCGGTGGTGCCAATACCCACACCACCATGTC < 41bp 0.791428153186095 0.410075218075043 0.36351377 0.17696053 prediction 0.58285630637219 Functional Loss - PCCB ENSG00000114054 CDS Human protein_coding chr3:136012684 chr3:136012687 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_55958 0 0 1 0 2 PCCB chr3:136012706 5'GT 136012706 Upstream 20bp
chr8 118184785 118184785 1 + G T SARC 118184783 + 118184763 118184803 41 CTTTATCAACAGCAGCCAGCCGGGACAGCCAAGTGGTTCGG CTTTATCAACAGCAGCCAGCCGTGACAGCCAAGTGGTTCGG < 41bp 0.834162166860386 0.542745151512864 0.5039428 0.099449724 prediction 0.582834030695045 Functional Loss - SLC30A8 ENSG00000164756 CDS Human protein_coding chr8:118184783 chr8:118184785 synonymous SNV . 0 23 hm5C_associated_SNPs_55959 0 0 0 0 1 SLC30A8 chr8:118184775 3'AG 118184775 Downstream 11bp
chr10 95995801 95995801 1 + G T HNSC 95995798 + 95995778 95995818 41 TCCGGAGCTGCAATCGAAGTCTGGAGACAGACGAGGAGGAC TCCGGAGCTGCAATCGAAGTCTGTAGACAGACGAGGAGGAC < 41bp 0.79141511759718 0.436782511194723 0.26623434 0.09183526 prediction 0.582830235194359 Functional Loss - PLCE1 ENSG00000138193 CDS Human protein_coding chr10:95995798 chr10:95995801 stopgain 0.953 1 24 hm5C_associated_SNPs_55960 0 0 0 0 1 PLCE1 chr10:95995877 5'GT 95995877 Upstream 77bp
chrX 153668842 153668842 1 + G T UCEC 153668840 + 153668820 153668860 41 ACGGCTTGGGCGAGCTGCCCCAGGGTTTTGCAAGGTGAGGA ACGGCTTGGGCGAGCTGCCCCATGGTTTTGCAAGGTGAGGA < 41bp 0.856949771625758 0.565549701067646 0.8664162 0.037375152 prediction 0.582800141116224 Functional Loss - GDI1 ENSG00000203879 CDS Human protein_coding chrX:153668840 chrX:153668842 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_55962 0 0 1 0 1 GDI1 chrX:153668853 5'GT 153668853 Upstream 12bp
chr13 47263286 47263286 1 + G C BLCA 47263285 + 47263265 47263305 41 CAGCAAGAAGGATTCTGATTCGGGAGTTGGAAGTGATAATG CAGCAAGAAGGATTCTGATTCCGGAGTTGGAAGTGATAATG < 41bp 0.793545904911826 0.502148315987946 0.89733887 0.646693 prediction 0.582795177847759 Functional Loss - LRCH1 ENSG00000136141 CDS Human protein_coding chr13:47263285 chr13:47263286 synonymous SNV . 0 22 hm5C_associated_SNPs_55964 0 0 1 0 2 LRCH1 chr13:47263268 3'AG 47263268 Downstream 19bp
chr13 47263286 47263286 1 + G C BLCA 47263285 + 47263265 47263305 41 CAGCAAGAAGGATTCTGATTCGGGAGTTGGAAGTGATAATG CAGCAAGAAGGATTCTGATTCCGGAGTTGGAAGTGATAATG < 41bp 0.793545904911826 0.502148315987946 0.89733887 0.646693 prediction 0.582795177847759 Functional Loss - LRCH1 ENSG00000136141 CDS Human protein_coding chr13:47263285 chr13:47263286 synonymous SNV . 0 22 hm5C_associated_SNPs_55964 0 0 1 0 2 LRCH1 chr13:47263331 5'GT 47263331 Upstream 46bp
chr3 52816059 52816059 1 + G C BLCA 52816058 + 52816038 52816078 41 AGGTGACCTACGATGTCAGTCGAGACAAGATCTGCGACCTC AGGTGACCTACGATGTCAGTCCAGACAAGATCTGCGACCTC < 41bp 0.819712972591681 0.528322153863024 0.83371276 0.24963355 prediction 0.582781637457313 Functional Loss - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52816058 chr3:52816059 nonsynonymous SNV 0.855 4 22 hm5C_associated_SNPs_55967 0 0 0 0 1 ITIH1 chr3:52816081 5'GT 52816081 Upstream 23bp
chr19 5041198 5041198 1 + G T SARC 5041196 + 5041176 5041216 41 GATGACCTTGAACGCAAATACTGGAAGAACCTCACCTTTGT GATGACCTTGAACGCAAATACTTGAAGAACCTCACCTTTGT < 41bp 0.827477746781039 0.536101234022402 0.80485606 0.26294172 prediction 0.582753025517275 Functional Loss - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5041196 chr19:5041198 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_55968 0 0 1 0 2 KDM4B chr19:5041148 3'AG 5041148 Downstream 51bp
chr19 5041198 5041198 1 + G T SARC 5041196 + 5041176 5041216 41 GATGACCTTGAACGCAAATACTGGAAGAACCTCACCTTTGT GATGACCTTGAACGCAAATACTTGAAGAACCTCACCTTTGT < 41bp 0.827477746781039 0.536101234022402 0.80485606 0.26294172 prediction 0.582753025517275 Functional Loss - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5041196 chr19:5041198 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_55968 0 0 1 0 2 KDM4B chr19:5041262 5'GT 5041262 Upstream 65bp
chrX 2928156 2928156 1 + G T SARC 2928153 + 2928133 2928173 41 CTTCCATGTGCACCCCAAGTCGGGCTGCCTTCCTGACCGGC CTTCCATGTGCACCCCAAGTCGGTCTGCCTTCCTGACCGGC < 41bp 0.791354000345369 0.396285282829062 0.9266875 0.20550722 prediction 0.582708000690739 Functional Loss - ARSH ENSG00000205667 CDS Human protein_coding chrX:2928153 chrX:2928156 nonsynonymous SNV 0.814 2 24 hm5C_associated_SNPs_55970 0 0 0 0 2 ARSH chrX:2928071 3'AG 2928071 Downstream 86bp
chrX 2928156 2928156 1 + G T SARC 2928153 + 2928133 2928173 41 CTTCCATGTGCACCCCAAGTCGGGCTGCCTTCCTGACCGGC CTTCCATGTGCACCCCAAGTCGGTCTGCCTTCCTGACCGGC < 41bp 0.791354000345369 0.396285282829062 0.9266875 0.20550722 prediction 0.582708000690739 Functional Loss - ARSH ENSG00000205667 CDS Human protein_coding chrX:2928153 chrX:2928156 nonsynonymous SNV 0.814 2 24 hm5C_associated_SNPs_55970 0 0 0 0 2 ARSH chrX:2928192 5'GT 2928192 Upstream 37bp
chr1 7837270 7837270 1 + G T UCEC 7837268 + 7837248 7837288 41 ACAAGGTTCTGGAAAGAGACCAGAAGCTCTCTGAGTTAGAC ACAAGGTTCTGGAAAGAGACCATAAGCTCTCTGAGTTAGAC < 41bp 0.844510954426654 0.553175253619887 0.25916612 0.111893564 prediction 0.582671401613534 Functional Loss - VAMP3 ENSG00000049245 CDS Human protein_coding chr1:7837268 chr1:7837270 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_55972 0 0 1 0 1 VAMP3 chr1:7837220 3'AG 7837220 Downstream 51bp
chr22 45929726 45929726 1 + G T LUAD 45929724 + 45929704 45929744 41 TGGGCTCTTTCCGCTGCCAGCGGGACAGCAGCTGCGGGACT TGGGCTCTTTCCGCTGCCAGCGTGACAGCAGCTGCGGGACT < 41bp 0.863333359075754 0.572000067339643 0.904489 0.4809901 prediction 0.582666583472222 Functional Loss - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45929724 chr22:45929726 synonymous SNV . 0 23 hm5C_associated_SNPs_55973 0 0 1 0 2 FBLN1 chr22:45929641 3'AG 45929641 Downstream 86bp
chr22 45929726 45929726 1 + G T LUAD 45929724 + 45929704 45929744 41 TGGGCTCTTTCCGCTGCCAGCGGGACAGCAGCTGCGGGACT TGGGCTCTTTCCGCTGCCAGCGTGACAGCAGCTGCGGGACT < 41bp 0.863333359075754 0.572000067339643 0.904489 0.4809901 prediction 0.582666583472222 Functional Loss - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45929724 chr22:45929726 synonymous SNV . 0 23 hm5C_associated_SNPs_55973 0 0 1 0 2 FBLN1 chr22:45929778 5'GT 45929778 Upstream 53bp
chr4 3424297 3424297 1 + G T LUAD 3424294 + 3424274 3424314 41 CTCTTCCTGGTGGGCGGGGACAAGGTACTGGGCCCGCCTGA CTCTTCCTGGTGGGCGGGGACAATGTACTGGGCCCGCCTGA < 41bp 0.791330992602779 0.436772335803359 0.9134637 0.8889365 prediction 0.582661985205558 Functional Loss - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3424294 chr4:3424297 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_55974 0 0 1 0 1 RGS12 chr4:3424297 5'GT 3424297 Upstream 1bp
chr4 164428284 164428284 1 + G T UCEC 164428281 + 164428261 164428301 41 TTACGAGAGAGGCCCACAAACAAGAAAAAAAGGAAAAGTAA TTACGAGAGAGGCCCACAAACAATAAAAAAAGGAAAAGTAA < 41bp 0.854372783610258 0.563045117212686 0.90703607 0.8811816 prediction 0.582655332795144 Functional Loss - TMA16 ENSG00000198498 CDS Human protein_coding chr4:164428281 chr4:164428284 stopgain 0.995 1 24 hm5C_associated_SNPs_55976 0 0 1 0 2 TMA16 chr4:164428185 3'AG 164428185 Downstream 100bp
chr4 164428284 164428284 1 + G T UCEC 164428281 + 164428261 164428301 41 TTACGAGAGAGGCCCACAAACAAGAAAAAAAGGAAAAGTAA TTACGAGAGAGGCCCACAAACAATAAAAAAAGGAAAAGTAA < 41bp 0.854372783610258 0.563045117212686 0.90703607 0.8811816 prediction 0.582655332795144 Functional Loss - TMA16 ENSG00000198498 CDS Human protein_coding chr4:164428281 chr4:164428284 stopgain 0.995 1 24 hm5C_associated_SNPs_55976 0 0 1 0 2 TMA16 chr4:164428297 5'GT 164428297 Upstream 14bp
chr6 160237603 160237603 1 + G T LUSC 160237600 + 160237580 160237620 41 ACAAAGTGCCCCCACGAAGCCGCGTATGATGCCTTCCTCTG ACAAAGTGCCCCCACGAAGCCGCTTATGATGCCTTCCTCTG < 41bp 0.791318737951396 0.405920351164342 0.33689427 0.12321815 prediction 0.582637475902791 Functional Loss - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160237600 chr6:160237603 synonymous SNV . 0 24 hm5C_associated_SNPs_55977 0 0 0 0 2 PNLDC1 chr6:160237575 3'AG 160237575 Downstream 29bp
chr6 160237603 160237603 1 + G T LUSC 160237600 + 160237580 160237620 41 ACAAAGTGCCCCCACGAAGCCGCGTATGATGCCTTCCTCTG ACAAAGTGCCCCCACGAAGCCGCTTATGATGCCTTCCTCTG < 41bp 0.791318737951396 0.405920351164342 0.33689427 0.12321815 prediction 0.582637475902791 Functional Loss - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160237600 chr6:160237603 synonymous SNV . 0 24 hm5C_associated_SNPs_55977 0 0 0 0 2 PNLDC1 chr6:160237628 5'GT 160237628 Upstream 26bp
chr2 242741353 242741353 1 + G T KIRC 242741350 + 242741330 242741370 41 CCGCCGGCTCACGCGTCCACCTGGGCTACCCCTGGCTCTTC CCGCCGGCTCACGCGTCCACCTGTGCTACCCCTGGCTCTTC < 41bp 0.884895256363979 0.593604000180428 0.9122028 0.7343368 prediction 0.582582512367102 Functional Loss - GAL3ST2 ENSG00000154252 CDS Human protein_coding chr2:242741350 chr2:242741353 nonsynonymous SNV 0.348 4 24 hm5C_associated_SNPs_55979 0 0 0 0 1 GAL3ST2 chr2:242741451 5'GT 242741451 Upstream 99bp
chr5 40681108 40681108 1 + G T UCEC 40681106 + 40681086 40681126 41 AGCCACTATCATGTCCACTCCCGGGGTCAATTCGTCCGCCT AGCCACTATCATGTCCACTCCCTGGGTCAATTCGTCCGCCT < 41bp 0.791284735623336 0.454584909837785 0.9532141 0.3430757 prediction 0.582569471246673 Functional Loss - PTGER4 ENSG00000171522 CDS Human protein_coding chr5:40681106 chr5:40681108 nonsynonymous SNV 0.286 1 23 hm5C_associated_SNPs_55981 0 0 0 0 1 PTGER4 chr5:40681053 3'AG 40681053 Downstream 56bp
chr14 23240556 23240556 1 + G T UCEC 23240553 + 23240533 23240573 41 AATCAGTTGGAGCTAGCAGCCAGGGGTAAATAGTCCTTTCA AATCAGTTGGAGCTAGCAGCCAGTGGTAAATAGTCCTTTCA < 41bp 0.889087251594643 0.597805945385212 0.92178583 0.8293201 prediction 0.582562612418862 Functional Loss - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23240553 chr14:23240556 nonsynonymous SNV 0.690 2 24 hm5C_associated_SNPs_55983 0 0 0 1 2 OXA1L chr14:23240477 3'AG 23240477 Downstream 80bp
chr14 23240556 23240556 1 + G T UCEC 23240553 + 23240533 23240573 41 AATCAGTTGGAGCTAGCAGCCAGGGGTAAATAGTCCTTTCA AATCAGTTGGAGCTAGCAGCCAGTGGTAAATAGTCCTTTCA < 41bp 0.889087251594643 0.597805945385212 0.92178583 0.8293201 prediction 0.582562612418862 Functional Loss - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23240553 chr14:23240556 nonsynonymous SNV 0.690 2 24 hm5C_associated_SNPs_55983 0 0 0 1 2 OXA1L chr14:23240557 5'GT 23240557 Upstream 2bp
chr7 129989906 129989906 1 + G T LUAD 129989903 + 129989883 129989923 41 TGAAAGACATCAAAGCTTATCTGGAGTCTCATGGACTTGCT TGAAAGACATCAAAGCTTATCTGTAGTCTCATGGACTTGCT < 41bp 0.884288461456462 0.593008268033659 0.2929265 0.14901659 prediction 0.582560386845605 Functional Loss - CPA5 ENSG00000158525 CDS Human protein_coding chr7:129989903 chr7:129989906 stopgain 0.477 0 24 hm5C_associated_SNPs_55984 0 0 0 0 2 CPA5 chr7:129989816 3'AG 129989816 Downstream 91bp
chr7 129989906 129989906 1 + G T LUAD 129989903 + 129989883 129989923 41 TGAAAGACATCAAAGCTTATCTGGAGTCTCATGGACTTGCT TGAAAGACATCAAAGCTTATCTGTAGTCTCATGGACTTGCT < 41bp 0.884288461456462 0.593008268033659 0.2929265 0.14901659 prediction 0.582560386845605 Functional Loss - CPA5 ENSG00000158525 CDS Human protein_coding chr7:129989903 chr7:129989906 stopgain 0.477 0 24 hm5C_associated_SNPs_55984 0 0 0 0 2 CPA5 chr7:129989950 5'GT 129989950 Upstream 45bp
chr19 35837567 35837567 1 + A T UCEC 35837563 + 35837543 35837583 41 GGTCGGGGAGCGGCCTCAGGCACAAGAAAATGTGGACTATG GGTCGGGGAGCGGCCTCAGGCACATGAAAATGTGGACTATG < 41bp 0.791272347686022 0.499810395638986 0.10537222 0.18850139 prediction 0.582544695372044 Functional Loss - CD22 ENSG00000012124 CDS Human protein_coding chr19:35837563 chr19:35837567 nonsynonymous SNV 0.014 0 25 hm5C_associated_SNPs_55985 0 0 0 0 1 CD22 chr19:35837469 3'AG 35837469 Downstream 99bp
chr7 2566012 2566012 1 + A T LUSC 2566008 + 2565988 2566028 41 TCCACTCCCACCTGGAGAACCTGCAGCAGGTGCCCACCTCG TCCACTCCCACCTGGAGAACCTGCTGCAGGTGCCCACCTCG < 41bp 0.837463447674765 0.546195690907701 0.90951085 0.80498683 prediction 0.582535513534127 Functional Loss - LFNG ENSG00000106003 CDS Human protein_coding chr7:2566008 chr7:2566012 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_55987 0 0 0 0 1 LFNG chr7:2566043 5'GT 2566043 Upstream 32bp
chr19 17972966 17972966 1 + A C OV 17972962 + 17972942 17972982 41 ATCTGGCTGCGCTATGACTCCCGGAGCGGCACCCACAACAT ATCTGGCTGCGCTATGACTCCCGGCGCGGCACCCACAACAT < 41bp 0.904343809845349 0.613083727390608 0.40253288 0.3881614 prediction 0.582520164909484 Functional Loss - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17972962 chr19:17972966 nonsynonymous SNV 0.921 2 25 hm5C_associated_SNPs_55988 0 0 1 0 2 RPL18A chr19:17972903 3'AG 17972903 Downstream 64bp
chr19 17972966 17972966 1 + A C OV 17972962 + 17972942 17972982 41 ATCTGGCTGCGCTATGACTCCCGGAGCGGCACCCACAACAT ATCTGGCTGCGCTATGACTCCCGGCGCGGCACCCACAACAT < 41bp 0.904343809845349 0.613083727390608 0.40253288 0.3881614 prediction 0.582520164909484 Functional Loss - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17972962 chr19:17972966 nonsynonymous SNV 0.921 2 25 hm5C_associated_SNPs_55988 0 0 1 0 2 RPL18A chr19:17973032 5'GT 17973032 Upstream 67bp
chr12 54894409 54894409 1 + G T OV 54894407 + 54894387 54894427 41 TTGTGGATGTCATGGAATTTCGGGTGAGCTCTCTTGAGCCG TTGTGGATGTCATGGAATTTCGTGTGAGCTCTCTTGAGCCG < 41bp 0.842966762940069 0.551732842817636 0.87435305 0.44242603 prediction 0.582467840244867 Functional Loss - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54894407 chr12:54894409 synonymous SNV . 0 23 hm5C_associated_SNPs_55992 0 0 1 0 2 NCKAP1L chr12:54894317 3'AG 54894317 Downstream 93bp
chr12 54894409 54894409 1 + G T OV 54894407 + 54894387 54894427 41 TTGTGGATGTCATGGAATTTCGGGTGAGCTCTCTTGAGCCG TTGTGGATGTCATGGAATTTCGTGTGAGCTCTCTTGAGCCG < 41bp 0.842966762940069 0.551732842817636 0.87435305 0.44242603 prediction 0.582467840244867 Functional Loss - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54894407 chr12:54894409 synonymous SNV . 0 23 hm5C_associated_SNPs_55992 0 0 1 0 2 NCKAP1L chr12:54894409 5'GT 54894409 Upstream 1bp
chr22 29695604 29695604 1 + G T LIHC 29695602 + 29695582 29695622 41 ACCTTAGGTGGTGATCGTGGCAGAGGTGGCCCTGGTGGCAT ACCTTAGGTGGTGATCGTGGCATAGGTGGCCCTGGTGGCAT < 41bp 0.861262823125702 0.570029868293487 0.8827598 0.7680023 prediction 0.58246590966443 Functional Loss - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695602 chr22:29695604 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_55993 0 0 1 0 1 EWSR1 chr22:29695589 3'AG 29695589 Downstream 16bp
chr6 37138577 37138577 1 + G T DLBC 37138575 + 37138555 37138595 41 AGAAGGAGCCCCTGGAGTCGCAGTACCAGGTGGGCCCGCTA AGAAGGAGCCCCTGGAGTCGCATTACCAGGTGGGCCCGCTA < 41bp 0.856734226021494 0.565502977114147 0.71580493 0.17752317 prediction 0.582462497814693 Functional Loss - PIM1 ENSG00000137193 CDS Human protein_coding chr6:37138575 chr6:37138577 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_55994 0 0 1 0 2 PIM1 chr6:37138549 3'AG 37138549 Downstream 29bp
chr6 37138577 37138577 1 + G T DLBC 37138575 + 37138555 37138595 41 AGAAGGAGCCCCTGGAGTCGCAGTACCAGGTGGGCCCGCTA AGAAGGAGCCCCTGGAGTCGCATTACCAGGTGGGCCCGCTA < 41bp 0.856734226021494 0.565502977114147 0.71580493 0.17752317 prediction 0.582462497814693 Functional Loss - PIM1 ENSG00000137193 CDS Human protein_coding chr6:37138575 chr6:37138577 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_55994 0 0 1 0 2 PIM1 chr6:37138655 5'GT 37138655 Upstream 79bp
chr4 185940984 185940984 1 + G T LUAD 185940982 + 185940962 185941002 41 TGCACTCCGCTGATTTTCCCCGGGGAAGGGAAAAAGGTGGG TGCACTCCGCTGATTTTCCCCGTGGAAGGGAAAAAGGTGGG < 41bp 0.846309508815723 0.555080626858131 0.8771905 0.35322797 prediction 0.582457763915182 Functional Loss - HELT ENSG00000187821 CDS Human protein_coding chr4:185940982 chr4:185940984 synonymous SNV . 0 23 hm5C_associated_SNPs_55995 0 0 0 0 2 HELT chr4:185940901 3'AG 185940901 Downstream 84bp
chr4 185940984 185940984 1 + G T LUAD 185940982 + 185940962 185941002 41 TGCACTCCGCTGATTTTCCCCGGGGAAGGGAAAAAGGTGGG TGCACTCCGCTGATTTTCCCCGTGGAAGGGAAAAAGGTGGG < 41bp 0.846309508815723 0.555080626858131 0.8771905 0.35322797 prediction 0.582457763915182 Functional Loss - HELT ENSG00000187821 CDS Human protein_coding chr4:185940982 chr4:185940984 synonymous SNV . 0 23 hm5C_associated_SNPs_55995 0 0 0 0 2 HELT chr4:185940997 5'GT 185940997 Upstream 14bp
chr5 133451702 133451702 1 + A C KIRP 133451698 + 133451678 133451718 41 CACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCC CACCCCCCTCGGGAGCAGGGCAGCCCCCCCAGCCGCAGCCC < 41bp 0.79121181516002 0.390827605609534 0.41678268 0.3716731 prediction 0.58242363032004 Functional Loss - TCF7 ENSG00000081059 CDS Human protein_coding chr5:133451698 chr5:133451702 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_56000 0 0 0 0 2 TCF7 chr5:133451724 5'GT 133451724 Upstream 23bp
chr5 133451702 133451702 1 + A C KIRP 133451698 + 133451678 133451718 41 CACCCCCCTCGGGAGCAGGGCAGCACCCCCAGCCGCAGCCC CACCCCCCTCGGGAGCAGGGCAGCCCCCCCAGCCGCAGCCC < 41bp 0.79121181516002 0.390827605609534 0.41678268 0.3716731 prediction 0.58242363032004 Functional Loss - TCF7 ENSG00000081059 CDS Human protein_coding chr5:133451698 chr5:133451702 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_56000 0 0 0 0 2 TCF7 chr5:133451777 5'GT 133451777 Upstream 76bp
chr1 77509947 77509947 1 + A T LUAD 77509943 + 77509923 77509963 41 TGACCAGCTCAGGGCATCTGCTGCACAGTCGGCAAGGCTCC TGACCAGCTCAGGGCATCTGCTGCTCAGTCGGCAAGGCTCC < 41bp 0.791175668713599 0.461949282441647 0.11766136 0.09573844 prediction 0.582351337427199 Functional Loss - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77509943 chr1:77509947 nonsynonymous SNV 0.955 2 25 hm5C_associated_SNPs_56003 0 0 0 0 1 ST6GALNAC5 chr1:77509889 3'AG 77509889 Downstream 59bp
chr4 106552167 106552167 1 + G T rs61757395 106552165 + 106552145 106552185 41 CCTATGAAAAGGAAGAAGAGCTGAAGGAACATTTGAGCCAC CCTATGAAAAGGAAGAAGAGCTTAAGGAACATTTGAGCCAC < 41bp 0.791173291525116 0.480945735322159 0.39333108 0.104604095 prediction 0.582346583050232 Functional Loss - ARHGEF38 ENSG00000236699 CDS Human protein_coding chr4:106552165 chr4:106552167 synonymous SNV . 0 23 hm5C_associated_SNPs_56004 0 0 0 0 1 ARHGEF38 chr4:106552202 5'GT 106552202 Upstream 36bp
chr18 21098913 21098913 1 + G T PRAD 21098910 + 21098890 21098930 41 TTCTCGGACCTCCAACAGCACAGGAGCGGAGGTGGTCCTCT TTCTCGGACCTCCAACAGCACAGTAGCGGAGGTGGTCCTCT < 41bp 0.899828706494885 0.608661777260019 0.9141129 0.44727838 prediction 0.582333858469732 Functional Loss - C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21098910 chr18:21098913 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_56005 0 0 0 0 2 C18orf8 chr18:21098854 3'AG 21098854 Downstream 60bp
chr18 21098913 21098913 1 + G T PRAD 21098910 + 21098890 21098930 41 TTCTCGGACCTCCAACAGCACAGGAGCGGAGGTGGTCCTCT TTCTCGGACCTCCAACAGCACAGTAGCGGAGGTGGTCCTCT < 41bp 0.899828706494885 0.608661777260019 0.9141129 0.44727838 prediction 0.582333858469732 Functional Loss - C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21098910 chr18:21098913 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_56005 0 0 0 0 2 C18orf8 chr18:21098943 5'GT 21098943 Upstream 31bp
chr1 152975665 152975665 1 + G T COAD 152975663 + 152975643 152975683 41 AAACACAAAGATTCCAGAGCCAGGCTGTACCAAGGTCCCTG AAACACAAAGATTCCAGAGCCATGCTGTACCAAGGTCCCTG < 41bp 0.791164288434918 0.458968178792337 0.48599008 0.061075687 prediction 0.582328576869835 Functional Loss - SPRR3 ENSG00000163209 CDS Human protein_coding chr1:152975663 chr1:152975665 nonsynonymous SNV 0.013 0 23 hm5C_associated_SNPs_56006 0 0 0 0 1 SPRR3 chr1:152975676 5'GT 152975676 Upstream 12bp
chr2 48687006 48687006 1 + G T UCEC 48687003 + 48686983 48687023 41 GCTGTGGTTGACGGTCTCACCCGGAAGTACATGGAAACCAT GCTGTGGTTGACGGTCTCACCCGTAAGTACATGGAAACCAT < 41bp 0.887305304379011 0.596143547872848 0.43343168 0.094444424 prediction 0.582323513012327 Functional Loss - PPP1R21 ENSG00000162869 CDS Human protein_coding chr2:48687003 chr2:48687006 synonymous SNV . 0 24 hm5C_associated_SNPs_56007 0 0 1 0 1 PPP1R21 chr2:48687057 5'GT 48687057 Upstream 52bp
chr18 56601781 56601781 1 + G T SARC 56601778 + 56601758 56601798 41 CCTGAGTGTGGGGCCATCTGCAGGTCGGTGCACTTCCAGAC CCTGAGTGTGGGGCCATCTGCAGTTCGGTGCACTTCCAGAC < 41bp 0.791138182487276 0.404148114464912 0.88221824 0.4143432 prediction 0.582276364974552 Functional Loss - ZNF532 ENSG00000074657 CDS Human protein_coding chr18:56601778 chr18:56601781 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_56008 0 0 0 0 1 ZNF532 chr18:56601846 5'GT 56601846 Upstream 66bp
chr11 10506551 10506551 1 + G T OV 10506548 + 10506528 10506568 41 CTGGAGACCTACACGGTGGACATGAGCCACATCCTGGCTCT CTGGAGACCTACACGGTGGACATTAGCCACATCCTGGCTCT < 41bp 0.791129250465267 0.409130075997098 0.74163043 0.3344726 prediction 0.582258500930535 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10506548 chr11:10506551 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_56009 0 0 0 0 1 AMPD3 chr11:10506453 3'AG 10506453 Downstream 99bp
chr10 133976803 133976803 1 + G C CESC 133976802 + 133976782 133976822 41 CTGCTGTCAGAGGAGGAGCGCGAGAAGCTCAAGGTGGCCGT CTGCTGTCAGAGGAGGAGCGCCAGAAGCTCAAGGTGGCCGT < 41bp 0.791120679210332 0.49074844994005 0.92138577 0.91232973 prediction 0.582241358420663 Functional Loss - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133976802 chr10:133976803 nonsynonymous SNV 0.417 1 22 hm5C_associated_SNPs_56011 0 0 0 0 1 JAKMIP3 chr10:133976713 3'AG 133976713 Downstream 91bp
chr7 92888878 92888878 1 + G T STAD 92888875 + 92888855 92888895 41 CCTTAAGGAGGAAGATTATCCAGGAGCTATTCAGTTGTGCC CCTTAAGGAGGAAGATTATCCAGTAGCTATTCAGTTGTGCC < 41bp 0.791109620663617 0.432047241212625 0.8470806 0.20023581 prediction 0.582219241327234 Functional Loss - VPS50 ENSG00000004766 CDS Human protein_coding chr7:92888875 chr7:92888878 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_56012 0 0 1 0 2 VPS50 chr7:92888862 3'AG 92888862 Downstream 17bp
chr7 92888878 92888878 1 + G T STAD 92888875 + 92888855 92888895 41 CCTTAAGGAGGAAGATTATCCAGGAGCTATTCAGTTGTGCC CCTTAAGGAGGAAGATTATCCAGTAGCTATTCAGTTGTGCC < 41bp 0.791109620663617 0.432047241212625 0.8470806 0.20023581 prediction 0.582219241327234 Functional Loss - VPS50 ENSG00000004766 CDS Human protein_coding chr7:92888875 chr7:92888878 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_56012 0 0 1 0 2 VPS50 chr7:92888944 5'GT 92888944 Upstream 67bp
chr16 67907349 67907349 1 + A C rs534846188 67907345 + 67907325 67907365 41 CAGCTCCCTTAGGACTAGCTCTGGATCCTCCCGGCGGGTAA CAGCTCCCTTAGGACTAGCTCTGGCTCCTCCCGGCGGGTAA < 41bp 0.791108532995691 0.418936341703699 0.6528483 0.35174888 prediction 0.582217065991383 Functional Loss - EDC4 ENSG00000038358 intronic Human protein_coding chr16:67907345 chr16:67907349 . . 0 25 hm5C_associated_SNPs_56013 0 0 1 0 1 EDC4 chr16:67907361 5'GT 67907361 Upstream 13bp
chr7 120591288 120591288 1 + G T GBM 120591286 + 120591266 120591306 41 GCGAGATGGACCTGCAGGTGCAGAGTAAGTCGGCGCGTCTA GCGAGATGGACCTGCAGGTGCATAGTAAGTCGGCGCGTCTA < 41bp 0.847810923096871 0.556708054895927 0.8490697 0.16226545 prediction 0.582205736401887 Functional Loss - ING3 ENSG00000071243 CDS Human protein_coding chr7:120591286 chr7:120591288 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_56014 0 0 1 0 1 ING3 chr7:120591218 3'AG 120591218 Downstream 71bp
chr11 68701297 68701297 1 + G T LUAD 68701295 + 68701275 68701315 41 TGTGGCTGCCACAGAAGAGACGGGTGTGCCCCTGCTCTTGG TGTGGCTGCCACAGAAGAGACGTGTGTGCCCCTGCTCTTGG < 41bp 0.866647680182619 0.575605891018708 0.88461274 0.5831399 prediction 0.582083578327824 Functional Loss - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68701295 chr11:68701297 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_56018 0 0 0 0 2 IGHMBP2 chr11:68701263 3'AG 68701263 Downstream 35bp
chr11 68701297 68701297 1 + G T LUAD 68701295 + 68701275 68701315 41 TGTGGCTGCCACAGAAGAGACGGGTGTGCCCCTGCTCTTGG TGTGGCTGCCACAGAAGAGACGTGTGTGCCCCTGCTCTTGG < 41bp 0.866647680182619 0.575605891018708 0.88461274 0.5831399 prediction 0.582083578327824 Functional Loss - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68701295 chr11:68701297 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_56018 0 0 0 0 2 IGHMBP2 chr11:68701381 5'GT 68701381 Upstream 85bp
chr9 104307119 104307119 1 + G T UCEC 104307117 + 104307097 104307137 41 CACAGGAGAATATGAGGCTACAGGAATTGACAGATCTTCTT CACAGGAGAATATGAGGCTACATGAATTGACAGATCTTCTT < 41bp 0.849296778496175 0.558257622576549 0.2632123 0.2636522 prediction 0.582078311839253 Functional Loss - RNF20 ENSG00000155827 CDS Human protein_coding chr9:104307117 chr9:104307119 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_56019 0 0 1 0 2 RNF20 chr9:104307049 3'AG 104307049 Downstream 71bp
chr9 104307119 104307119 1 + G T UCEC 104307117 + 104307097 104307137 41 CACAGGAGAATATGAGGCTACAGGAATTGACAGATCTTCTT CACAGGAGAATATGAGGCTACATGAATTGACAGATCTTCTT < 41bp 0.849296778496175 0.558257622576549 0.2632123 0.2636522 prediction 0.582078311839253 Functional Loss - RNF20 ENSG00000155827 CDS Human protein_coding chr9:104307117 chr9:104307119 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_56019 0 0 1 0 2 RNF20 chr9:104307167 5'GT 104307167 Upstream 49bp
chr19 45852852 45852852 1 + A C rs146271778 45852848 + 45852828 45852868 41 GACCCCAACGTGGCCAAGACCAAGAACAACCTGGTGAGGCC GACCCCAACGTGGCCAAGACCAAGCACAACCTGGTGAGGCC < 41bp 0.791035468005509 0.388834264239195 0.89760435 0.8067312 prediction 0.582070936011017 Functional Loss - KLC3 ENSG00000104892 CDS Human protein_coding chr19:45852848 chr19:45852852 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_56020 0 0 0 0 1 KLC3 chr19:45852860 5'GT 45852860 Upstream 9bp
chrX 51637834 51637834 1 + G T LUAD 51637831 + 51637811 51637851 41 ACCCCCCTTATTCTCAACTCCGCGATCCGCCTGCCGTCCTG ACCCCCCTTATTCTCAACTCCGCTATCCGCCTGCCGTCCTG < 41bp 0.888850353392818 0.597818972488567 0.38286048 0.089811 prediction 0.582062761808501 Functional Loss - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51637831 chrX:51637834 nonsynonymous SNV 0.030 1 24 hm5C_associated_SNPs_56022 0 0 1 0 1 MAGED1 chrX:51637890 5'GT 51637890 Upstream 57bp
chr18 61647071 61647071 1 + G T UCEC 61647068 + 61647048 61647088 41 ACAAAGACGGAGATATTCACCGAGGTTTCCAGTCACTTCTC ACAAAGACGGAGATATTCACCGATGTTTCCAGTCACTTCTC < 41bp 0.89173994533632 0.600710799177631 0.88605547 0.26989797 prediction 0.582058292317377 Functional Loss - SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61647068 chr18:61647071 nonsynonymous SNV 0.011 2 24 hm5C_associated_SNPs_56023 0 0 0 0 1 SERPINB8 chr18:61647035 3'AG 61647035 Downstream 37bp
chr7 881765 881765 1 + G T LUSC 881763 + 881743 881783 41 CAGACCACAGTGGACCACTTCTGGGGTGAGTCCCTGCGAGA CAGACCACAGTGGACCACTTCTTGGGTGAGTCCCTGCGAGA < 41bp 0.791014046402142 0.470978965339339 0.92827725 0.18357894 prediction 0.582028092804284 Functional Loss - SUN1 ENSG00000164828 CDS Human protein_coding chr7:881763 chr7:881765 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_56024 0 0 1 0 1 SUN1 chr7:881767 5'GT 881767 Upstream 3bp
chr6 30590648 30590648 1 + G T OV 30590646 + 30590626 30590666 41 GCAATTTGTCTGCGCCCACACGGGTATCATCTTCTATGCTC GCAATTTGTCTGCGCCCACACGTGTATCATCTTCTATGCTC < 41bp 0.80625090920703 0.515241689229427 0.3543362 0.19226637 prediction 0.582018439955207 Functional Loss - MRPS18B ENSG00000204568 CDS Human protein_coding chr6:30590646 chr6:30590648 nonsynonymous SNV 0.595 4 23 hm5C_associated_SNPs_56025 0 0 1 0 2 MRPS18B chr6:30590609 3'AG 30590609 Downstream 40bp
chr6 30590648 30590648 1 + G T OV 30590646 + 30590626 30590666 41 GCAATTTGTCTGCGCCCACACGGGTATCATCTTCTATGCTC GCAATTTGTCTGCGCCCACACGTGTATCATCTTCTATGCTC < 41bp 0.80625090920703 0.515241689229427 0.3543362 0.19226637 prediction 0.582018439955207 Functional Loss - MRPS18B ENSG00000204568 CDS Human protein_coding chr6:30590646 chr6:30590648 nonsynonymous SNV 0.595 4 23 hm5C_associated_SNPs_56025 0 0 1 0 2 MRPS18B chr6:30590675 5'GT 30590675 Upstream 28bp
chr11 2335797 2335797 1 + G T BLCA 2335794 + 2335774 2335814 41 GTGTCAGGGAGAGGAGGCGGCGAGAGAGGTGAGGGGGGGAC GTGTCAGGGAGAGGAGGCGGCGATAGAGGTGAGGGGGGGAC < 41bp 0.871018918838285 0.580031637195184 0.90052307 0.89126503 prediction 0.5819745632862 Functional Loss - TSPAN32 ENSG00000064201 CDS Human protein_coding chr11:2335794 chr11:2335797 nonsynonymous SNV 0.128 2 24 hm5C_associated_SNPs_56030 0 0 1 1 2 TSPAN32 chr11:2335715 3'AG 2335715 Downstream 83bp
chr11 2335797 2335797 1 + G T BLCA 2335794 + 2335774 2335814 41 GTGTCAGGGAGAGGAGGCGGCGAGAGAGGTGAGGGGGGGAC GTGTCAGGGAGAGGAGGCGGCGATAGAGGTGAGGGGGGGAC < 41bp 0.871018918838285 0.580031637195184 0.90052307 0.89126503 prediction 0.5819745632862 Functional Loss - TSPAN32 ENSG00000064201 CDS Human protein_coding chr11:2335794 chr11:2335797 nonsynonymous SNV 0.128 2 24 hm5C_associated_SNPs_56030 0 0 1 1 2 TSPAN32 chr11:2335801 5'GT 2335801 Upstream 5bp
chr19 50983403 50983403 1 + G T DLBC 50983400 + 50983380 50983420 41 CTGAATGGCCTGTACCGGGTCCGGATCCCAAGGCGACCCGG CTGAATGGCCTGTACCGGGTCCGTATCCCAAGGCGACCCGG < 41bp 0.790985792391788 0.405977357684953 0.890438 0.1349968 prediction 0.581971584783577 Functional Loss - EMC10 ENSG00000161671 CDS Human protein_coding chr19:50983400 chr19:50983403 synonymous SNV . 0 24 hm5C_associated_SNPs_56032 0 0 1 0 2 EMC10 chr19:50983368 3'AG 50983368 Downstream 36bp
chr19 50983403 50983403 1 + G T DLBC 50983400 + 50983380 50983420 41 CTGAATGGCCTGTACCGGGTCCGGATCCCAAGGCGACCCGG CTGAATGGCCTGTACCGGGTCCGTATCCCAAGGCGACCCGG < 41bp 0.790985792391788 0.405977357684953 0.890438 0.1349968 prediction 0.581971584783577 Functional Loss - EMC10 ENSG00000161671 CDS Human protein_coding chr19:50983400 chr19:50983403 synonymous SNV . 0 24 hm5C_associated_SNPs_56032 0 0 1 0 2 EMC10 chr19:50983472 5'GT 50983472 Upstream 70bp
chr15 29078433 29078433 1 + G T rs546711525 29078431 + 29078411 29078451 41 TTTACTTGCAGGCCTGAGACCTGGGAGGAAGCTGGAGAAAA TTTACTTGCAGGCCTGAGACCTTGGAGGAAGCTGGAGAAAA < 41bp 0.790975425333756 0.464959502678543 0.85157406 0.47009715 prediction 0.581950850667512 Functional Loss - PDCD6IPP2 ENSG00000261377 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:29078431 chr15:29078433 . . 0 23 hm5C_associated_SNPs_56033 0 0 1 0 2 PDCD6IPP2 chr15:29078422 3'AG 29078422 Downstream 12bp
chr15 29078433 29078433 1 + G T rs546711525 29078431 + 29078411 29078451 41 TTTACTTGCAGGCCTGAGACCTGGGAGGAAGCTGGAGAAAA TTTACTTGCAGGCCTGAGACCTTGGAGGAAGCTGGAGAAAA < 41bp 0.790975425333756 0.464959502678543 0.85157406 0.47009715 prediction 0.581950850667512 Functional Loss - PDCD6IPP2 ENSG00000261377 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:29078431 chr15:29078433 . . 0 23 hm5C_associated_SNPs_56033 0 0 1 0 2 PDCD6IPP2 chr15:29078524 5'GT 29078524 Upstream 92bp
chr5 74065096 74065096 1 + G T UCEC 74065094 + 74065074 74065114 41 AGAATGATGAAAAGACACCACAGGGAGCAGTACCTGCCTAT AGAATGATGAAAAGACACCACATGGAGCAGTACCTGCCTAT < 41bp 0.82309925544878 0.532128903444321 0.8117164 0.4222846 prediction 0.581940704008919 Functional Loss - NSA2 ENSG00000164346 CDS Human protein_coding chr5:74065094 chr5:74065096 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_56034 0 0 1 0 2 NSA2 chr5:74065039 3'AG 74065039 Downstream 58bp
chr5 74065096 74065096 1 + G T UCEC 74065094 + 74065074 74065114 41 AGAATGATGAAAAGACACCACAGGGAGCAGTACCTGCCTAT AGAATGATGAAAAGACACCACATGGAGCAGTACCTGCCTAT < 41bp 0.82309925544878 0.532128903444321 0.8117164 0.4222846 prediction 0.581940704008919 Functional Loss - NSA2 ENSG00000164346 CDS Human protein_coding chr5:74065094 chr5:74065096 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_56034 0 0 1 0 2 NSA2 chr5:74065189 5'GT 74065189 Upstream 94bp
chr8 22465545 22465545 1 + G C UCEC 22465544 + 22465524 22465564 41 ACCTGAACAGATTTCCTGCCCGGGGCCCTCATGGACGGTTG ACCTGAACAGATTTCCTGCCCCGGGCCCTCATGGACGGTTG < 41bp 0.821018972578088 0.530055742295725 0.68710726 0.27880645 prediction 0.581926460564726 Functional Loss - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22465544 chr8:22465545 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_56035 0 0 1 0 2 CCAR2 chr8:22465482 3'AG 22465482 Downstream 64bp
chr8 22465545 22465545 1 + G C UCEC 22465544 + 22465524 22465564 41 ACCTGAACAGATTTCCTGCCCGGGGCCCTCATGGACGGTTG ACCTGAACAGATTTCCTGCCCCGGGCCCTCATGGACGGTTG < 41bp 0.821018972578088 0.530055742295725 0.68710726 0.27880645 prediction 0.581926460564726 Functional Loss - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22465544 chr8:22465545 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_56035 0 0 1 0 2 CCAR2 chr8:22465578 5'GT 22465578 Upstream 34bp
chr4 128554258 128554258 1 + A T UCEC 128554254 + 128554234 128554274 41 GCTCCCTGGAGACCCCTCTTCACAAGAAGAAGATGAGGACT GCTCCCTGGAGACCCCTCTTCACATGAAGAAGATGAGGACT < 41bp 0.790950536795074 0.489518226856888 0.21226376 0.34495655 prediction 0.581901073590148 Functional Loss - INTU ENSG00000164066 CDS Human protein_coding chr4:128554254 chr4:128554258 nonsynonymous SNV 0.273 1 25 hm5C_associated_SNPs_56038 0 0 0 0 1 INTU chr4:128554335 5'GT 128554335 Upstream 78bp
chr7 143078840 143078840 1 + G T LUAD 143078838 + 143078818 143078858 41 GCCCAGCGCGCACAGATGGGCCGGGTGGGCGAGATTCCCCC GCCCAGCGCGCACAGATGGGCCTGGTGGGCGAGATTCCCCC < 41bp 0.790950063958682 0.452889917828307 0.90367854 0.80332875 prediction 0.581900127917365 Functional Loss - ZYX ENSG00000159840 CDS Human protein_coding chr7:143078838 chr7:143078840 nonsynonymous SNV 0.994 0 23 hm5C_associated_SNPs_56039 0 0 1 0 1 ZYX chr7:143078872 5'GT 143078872 Upstream 33bp
chr12 54448671 54448671 1 + G C CESC 54448670 + 54448650 54448690 41 CGGAGGGGAACCCAAGCGCTCGAGGACAGCCTATACCCGGC CGGAGGGGAACCCAAGCGCTCCAGGACAGCCTATACCCGGC < 41bp 0.79092246443396 0.485216085941089 0.9162352 0.4559994 prediction 0.581844928867919 Functional Loss - HOXC4 ENSG00000198353;ENSG00000273266 CDS Human other chr12:54448670 chr12:54448671 synonymous SNV . 0 22 hm5C_associated_SNPs_56042 0 0 1 0 1 HOXC4 chr12:54448634 3'AG 54448634 Downstream 38bp
chr10 82122242 82122242 1 + G T LUAD 82122239 + 82122219 82122259 41 AGAGGTGCTTTGGAAATTGCCTGGCCCAGGCACTGGCAGAG AGAGGTGCTTTGGAAATTGCCTGTCCCAGGCACTGGCAGAG < 41bp 0.790919925231706 0.404965294679776 0.30005443 0.114804864 prediction 0.581839850463412 Functional Loss - DYDC2 ENSG00000133665 CDS Human protein_coding chr10:82122239 chr10:82122242 nonsynonymous SNV 0.966 0 24 hm5C_associated_SNPs_56043 0 0 0 0 1 DYDC2 chr10:82122191 3'AG 82122191 Downstream 52bp
chr13 51921333 51921333 1 + G T UCEC 51921331 + 51921311 51921351 41 GTGCCTATGGCCTCGTCCTTCAGGTCCCCATGATGCACCAA GTGCCTATGGCCTCGTCCTTCATGTCCCCATGATGCACCAA < 41bp 0.790914041104008 0.442680148972389 0.2840011 0.039933264 prediction 0.581828082208015 Functional Loss - SERPINE3 ENSG00000253309 CDS Human protein_coding chr13:51921331 chr13:51921333 nonsynonymous SNV 0.704 3 23 hm5C_associated_SNPs_56046 0 0 0 0 1 SERPINE3 chr13:51921370 5'GT 51921370 Upstream 38bp
chr10 50835767 50835767 1 + A T LUAD 50835763 + 50835743 50835783 41 CAACGAGGACGAGCGTTTGCCTCCAATTGGCCTGCTGACGT CAACGAGGACGAGCGTTTGCCTCCTATTGGCCTGCTGACGT < 41bp 0.79088157357012 0.460835724998615 0.94591475 0.04448816 prediction 0.58176314714024 Functional Loss - CHAT ENSG00000070748 CDS Human protein_coding chr10:50835763 chr10:50835767 synonymous SNV . 0 25 hm5C_associated_SNPs_56051 0 0 0 0 1 CHAT chr10:50835831 5'GT 50835831 Upstream 65bp
chrX 35969453 35969453 1 + G T UCEC 35969450 + 35969430 35969470 41 TAAATTGGGTGGCCATCATACAAGATGATGCCGTGGGAGAA TAAATTGGGTGGCCATCATACAATATGATGCCGTGGGAGAA < 41bp 0.881938824598513 0.591072057388114 0.27117658 0.07360521 prediction 0.581733534420799 Functional Loss - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35969450 chrX:35969453 nonsynonymous SNV 0.008 2 24 hm5C_associated_SNPs_56053 0 0 0 0 1 CFAP47 chrX:35969476 5'GT 35969476 Upstream 24bp
chr6 84772692 84772692 1 + A T SKCM 84772688 + 84772668 84772708 41 TTTGTGCTGACCTTGCTGACCAAGACAGGAGCCCCACACCA TTTGTGCTGACCTTGCTGACCAAGTCAGGAGCCCCACACCA < 41bp 0.815739854817131 0.524874714226498 0.17170054 0.31054768 prediction 0.581730281181265 Functional Loss - MRAP2 ENSG00000135324 CDS Human protein_coding chr6:84772688 chr6:84772692 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_56054 0 0 0 0 1 MRAP2 chr6:84772612 3'AG 84772612 Downstream 81bp
chr17 38457165 38457165 1 + G T OV 38457162 + 38457142 38457182 41 ATCTCAGAAGTTGATGGTAACAGGATGACCTTGAGCCAAGA ATCTCAGAAGTTGATGGTAACAGTATGACCTTGAGCCAAGA < 41bp 0.887353866950186 0.596507612000506 0.90955126 0.30778992 prediction 0.58169250989936 Functional Loss - CDC6 ENSG00000094804 CDS Human protein_coding chr17:38457162 chr17:38457165 nonsynonymous SNV 0.969 1 24 hm5C_associated_SNPs_56056 0 0 1 0 1 CDC6 chr17:38457080 3'AG 38457080 Downstream 86bp
chr6 26413419 26413419 1 + A C UCEC 26413415 + 26413395 26413435 41 AGCGGATGTGATTCTGGATCCAAAAACAGCAAACCCCATCC AGCGGATGTGATTCTGGATCCAAACACAGCAAACCCCATCC < 41bp 0.79084258204256 0.40270499780572 0.028480858 0.0076144934 prediction 0.58168516408512 Functional Loss - BTN3A1 ENSG00000026950 CDS Human protein_coding chr6:26413415 chr6:26413419 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_56058 0 0 0 0 1 BTN3A1 chr6:26413397 3'AG 26413397 Downstream 23bp
chr16 20451237 20451237 1 + G T ESCA 20451235 + 20451215 20451255 41 ACTGCTCCATACAAATACCCCAGGAAGGTAAATATCAGGGT ACTGCTCCATACAAATACCCCATGAAGGTAAATATCAGGGT < 41bp 0.790783091916408 0.469533697179644 0.1208089 0.04231617 prediction 0.581566183832817 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20451235 chr16:20451237 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_56063 0 0 0 0 1 ACSM5 chr16:20451241 5'GT 20451241 Upstream 5bp
chr15 45427484 45427484 1 + G T COAD 45427481 + 45427461 45427501 41 GACGGAGTCCCAGCAATCCCCGGGACCCGGTGAGGCGGGGA GACGGAGTCCCAGCAATCCCCGGTACCCGGTGAGGCGGGGA < 41bp 0.885906493256509 0.595140508006896 0.8977598 0.779733 prediction 0.581531970499226 Functional Loss - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45427481 chr15:45427484 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_56067 0 0 0 0 1 DUOX1 chr15:45427489 5'GT 45427489 Upstream 6bp
chr8 38775491 38775491 1 + A T COAD 38775487 + 38775467 38775507 41 AGAACCGAATCTGTGGGTTTCTGGACATCGAGGAGCATGAG AGAACCGAATCTGTGGGTTTCTGGTCATCGAGGAGCATGAG < 41bp 0.827864117504595 0.537103963958588 0.41853932 0.16451052 prediction 0.581520307092014 Functional Loss - PLEKHA2 ENSG00000169499 CDS Human protein_coding chr8:38775487 chr8:38775491 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_56068 0 0 1 0 1 PLEKHA2 chr8:38775588 5'GT 38775588 Upstream 98bp
chr10 126172756 126172756 1 + G T rs150798158 126172754 + 126172734 126172774 41 GGTTCTGCACCAACGAGTCGCAGAAGTCCCGGGCAGAGCTG GGTTCTGCACCAACGAGTCGCATAAGTCCCGGGCAGAGCTG < 41bp 0.790758053132078 0.450777506154211 0.8563198 0.17882317 prediction 0.581516106264157 Functional Loss - LHPP ENSG00000107902 CDS Human protein_coding chr10:126172754 chr10:126172756 nonsynonymous SNV 0.518 4 23 hm5C_associated_SNPs_56070 0 0 1 0 1 LHPP chr10:126172708 3'AG 126172708 Downstream 49bp
chr6 112382220 112382220 1 + A T UCEC 112382216 + 112382196 112382236 41 CTGCTGCAGGGTACAGGGCACTGGACCATTAGATACAACAC CTGCTGCAGGGTACAGGGCACTGGTCCATTAGATACAACAC < 41bp 0.793916023090698 0.503161225018442 0.12557769 0.13838318 prediction 0.581509596144511 Functional Loss - WISP3 ENSG00000112761 CDS Human protein_coding chr6:112382216 chr6:112382220 synonymous SNV . 0 25 hm5C_associated_SNPs_56071 0 0 0 0 1 WISP3 chr6:112382194 3'AG 112382194 Downstream 27bp
chr16 30194954 30194954 1 + G T rs186185074 30194952 + 30194932 30194972 41 CTTGACAAGAGCATCTTCAGCGGGCGAGTCCCCGGCTCCTC CTTGACAAGAGCATCTTCAGCGTGCGAGTCCCCGGCTCCTC < 41bp 0.790743492679631 0.462248590600684 0.92217076 0.27908522 prediction 0.581486985359263 Functional Loss - CORO1A ENSG00000261416 ncRNA_exonic Human antisense chr16:30194952 chr16:30194954 . . 0 23 hm5C_associated_SNPs_56075 0 0 1 0 1 CORO1A chr16:30195046 5'GT 30195046 Upstream 93bp
chr19 3589910 3589910 1 + G T CHOL 3589907 + 3589887 3589927 41 TGGGCATTCGGGACCCCGAGCTGGGTAAGGGGCCAGGGTAA TGGGCATTCGGGACCCCGAGCTGTGTAAGGGGCCAGGGTAA < 41bp 0.790742562436996 0.412253049649668 0.89232445 0.40689057 prediction 0.581485124873992 Functional Loss - GIPC3 ENSG00000179855 CDS Human protein_coding chr19:3589907 chr19:3589910 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_56077 0 0 0 0 2 GIPC3 chr19:3589829 3'AG 3589829 Downstream 82bp
chr19 3589910 3589910 1 + G T CHOL 3589907 + 3589887 3589927 41 TGGGCATTCGGGACCCCGAGCTGGGTAAGGGGCCAGGGTAA TGGGCATTCGGGACCCCGAGCTGTGTAAGGGGCCAGGGTAA < 41bp 0.790742562436996 0.412253049649668 0.89232445 0.40689057 prediction 0.581485124873992 Functional Loss - GIPC3 ENSG00000179855 CDS Human protein_coding chr19:3589907 chr19:3589910 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_56077 0 0 0 0 2 GIPC3 chr19:3589910 5'GT 3589910 Upstream 1bp
chr1 17634806 17634806 1 + G T LUAD 17634804 + 17634784 17634824 41 ACCTTGACTCAGCTTGACATCTGCAGGTAAGAGGGGGGCCT ACCTTGACTCAGCTTGACATCTTCAGGTAAGAGGGGGGCCT < 41bp 0.830941648128339 0.540213022310473 0.29739612 0.38813376 prediction 0.581457251635733 Functional Loss - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17634804 chr1:17634806 nonsynonymous SNV 0.007 0 23 hm5C_associated_SNPs_56079 0 0 0 0 1 PADI4 chr1:17634809 5'GT 17634809 Upstream 4bp
chr5 43277226 43277226 1 + A C OV 43277222 + 43277202 43277242 41 GAAAACCCAGAGGCTACTATCCCGAGAAATCTCCAGCATGG GAAAACCCAGAGGCTACTATCCCGCGAAATCTCCAGCATGG < 41bp 0.79070644279945 0.381699730675147 0.43164015 0.20074973 prediction 0.581412885598901 Functional Loss - NIM1K ENSG00000177453 CDS Human protein_coding chr5:43277222 chr5:43277226 synonymous SNV . 0 25 hm5C_associated_SNPs_56082 0 0 0 0 1 NIM1K chr5:43277159 3'AG 43277159 Downstream 68bp
chr2 231134608 231134608 1 + G T UCEC 231134606 + 231134586 231134626 41 TTCCTGTGTCATGTGTTTCTCAGAAGAGGTGCCAGGAAGCC TTCCTGTGTCATGTGTTTCTCATAAGAGGTGCCAGGAAGCC < 41bp 0.790676910859924 0.471443602986503 0.8755113 0.22122282 prediction 0.581353821719847 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231134606 chr2:231134608 stopgain 0.399 0 23 hm5C_associated_SNPs_56084 0 0 0 1 2 SP140 chr2:231134552 3'AG 231134552 Downstream 57bp
chr2 231134608 231134608 1 + G T UCEC 231134606 + 231134586 231134626 41 TTCCTGTGTCATGTGTTTCTCAGAAGAGGTGCCAGGAAGCC TTCCTGTGTCATGTGTTTCTCATAAGAGGTGCCAGGAAGCC < 41bp 0.790676910859924 0.471443602986503 0.8755113 0.22122282 prediction 0.581353821719847 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231134606 chr2:231134608 stopgain 0.399 0 23 hm5C_associated_SNPs_56084 0 0 0 1 2 SP140 chr2:231134668 5'GT 231134668 Upstream 61bp
chr3 180630511 180630511 1 + G T LUSC 180630509 + 180630489 180630529 41 GTGGAGGTTCGCGGCTCTAACGGGGCTTTCTACAAGGTACT GTGGAGGTTCGCGGCTCTAACGTGGCTTTCTACAAGGTACT < 41bp 0.829523793806918 0.538863226037561 0.96809965 0.9435867 prediction 0.581321135538713 Functional Loss - FXR1 ENSG00000114416 CDS Human protein_coding chr3:180630509 chr3:180630511 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_56087 0 0 1 0 1 FXR1 chr3:180630524 5'GT 180630524 Upstream 14bp
chr1 61869831 61869831 1 + G T LUAD 61869829 + 61869809 61869849 41 TCCCGACATCACCCATTATCCAGCAGCCTGGGCCTTACTTC TCCCGACATCACCCATTATCCATCAGCCTGGGCCTTACTTC < 41bp 0.830470577239047 0.539813542971369 0.12511805 0.015608251 prediction 0.581314068535357 Functional Loss - NFIA ENSG00000162599 CDS Human protein_coding chr1:61869829 chr1:61869831 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_56088 0 0 1 0 1 NFIA chr1:61869776 3'AG 61869776 Downstream 56bp
chr19 41088331 41088331 1 + G T COAD 41088329 + 41088309 41088349 41 GCTCATTGCTACAAGCCACACAGGGCGCATCGGGGTGTGGA GCTCATTGCTACAAGCCACACATGGCGCATCGGGGTGTGGA < 41bp 0.79064306043762 0.447702494219517 0.15620002 0.0032354593 prediction 0.581286120875239 Functional Loss - SHKBP1 ENSG00000160410;ENSG00000160410 exonic;splicing Human protein_coding chr19:41088329 chr19:41088331 nonsynonymous SNV 0.198 3 23 hm5C_associated_SNPs_56090 0 0 1 0 2 SHKBP1 chr19:41088257 3'AG 41088257 Downstream 75bp
chr19 41088331 41088331 1 + G T COAD 41088329 + 41088309 41088349 41 GCTCATTGCTACAAGCCACACAGGGCGCATCGGGGTGTGGA GCTCATTGCTACAAGCCACACATGGCGCATCGGGGTGTGGA < 41bp 0.79064306043762 0.447702494219517 0.15620002 0.0032354593 prediction 0.581286120875239 Functional Loss - SHKBP1 ENSG00000160410;ENSG00000160410 exonic;splicing Human protein_coding chr19:41088329 chr19:41088331 nonsynonymous SNV 0.198 3 23 hm5C_associated_SNPs_56090 0 0 1 0 2 SHKBP1 chr19:41088372 5'GT 41088372 Upstream 42bp
chr19 55597258 55597258 1 + G T LGG 55597256 + 55597236 55597276 41 GCCTCAGCTGGAGTCAGAGACAGCAGGAAAATGGGTCCTGT GCCTCAGCTGGAGTCAGAGACATCAGGAAAATGGGTCCTGT < 41bp 0.790637406064929 0.468522641234245 0.50697935 0.27357584 prediction 0.581274812129857 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55597256 chr19:55597258 nonsynonymous SNV 0.013 0 23 hm5C_associated_SNPs_56093 0 0 0 1 1 EPS8L1 chr19:55597209 3'AG 55597209 Downstream 50bp
chr1 76216217 76216217 1 + A T LUAD 76216213 + 76216193 76216233 41 GCCCTGGAAAGGAAAACTTTCGGAAAGCTACTTGTAGAGGT GCCCTGGAAAGGAAAACTTTCGGATAGCTACTTGTAGAGGT < 41bp 0.80039027081825 0.509769958244732 0.82239974 0.83440757 prediction 0.581240625147036 Functional Loss - ACADM ENSG00000117054 CDS Human protein_coding chr1:76216213 chr1:76216217 stopgain 0.925 1 25 hm5C_associated_SNPs_56095 0 0 1 5 2 ACADM chr1:76216136 3'AG 76216136 Downstream 82bp
chr1 76216217 76216217 1 + A T LUAD 76216213 + 76216193 76216233 41 GCCCTGGAAAGGAAAACTTTCGGAAAGCTACTTGTAGAGGT GCCCTGGAAAGGAAAACTTTCGGATAGCTACTTGTAGAGGT < 41bp 0.80039027081825 0.509769958244732 0.82239974 0.83440757 prediction 0.581240625147036 Functional Loss - ACADM ENSG00000117054 CDS Human protein_coding chr1:76216213 chr1:76216217 stopgain 0.925 1 25 hm5C_associated_SNPs_56095 0 0 1 5 2 ACADM chr1:76216231 5'GT 76216231 Upstream 15bp
chr17 16285361 16285361 1 + G T LUSC 16285358 + 16285338 16285378 41 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATG CCAGCAGAGGCTCATCTTTGCAGTCAAGCAGCTGGAAGATG < 41bp 0.790616361861199 0.403453014322492 0.9107732 0.53110814 prediction 0.581232723722398 Functional Loss - UBB ENSG00000170315 CDS Human protein_coding chr17:16285358 chr17:16285361 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_56096 0 0 1 0 1 UBB chr17:16285444 5'GT 16285444 Upstream 84bp
chr9 2115837 2115837 1 + G T LUAD 2115834 + 2115814 2115854 41 CCAAACAGGATCTGCAGGCCCAAGACCGAGCTCACCGCATC CCAAACAGGATCTGCAGGCCCAATACCGAGCTCACCGCATC < 41bp 0.790609978986257 0.418849154941227 0.2211838 0.061338812 prediction 0.581219957972514 Functional Loss - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2115834 chr9:2115837 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_56098 0 0 1 0 1 SMARCA2 chr9:2115822 3'AG 2115822 Downstream 16bp
chr9 2115838 2115838 1 + A C TGCT 2115834 + 2115814 2115854 41 CCAAACAGGATCTGCAGGCCCAAGACCGAGCTCACCGCATC CCAAACAGGATCTGCAGGCCCAAGCCCGAGCTCACCGCATC < 41bp 0.790609978986257 0.40217960536714 0.2211838 0.16122028 prediction 0.581219957972514 Functional Loss - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2115834 chr9:2115838 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_56099 0 0 1 0 1 SMARCA2 chr9:2115822 3'AG 2115822 Downstream 17bp
chr1 16070675 16070675 1 + G T UCEC 16070672 + 16070652 16070692 41 CAGGGCTCCCAGGGTGCCGCCGAGAGGCTGCAGCTCTACCT CAGGGCTCCCAGGGTGCCGCCGATAGGCTGCAGCTCTACCT < 41bp 0.891615283487443 0.601011914927822 0.9221502 0.7630773 prediction 0.581206737119242 Functional Loss - TMEM82 ENSG00000162460 CDS Human protein_coding chr1:16070672 chr1:16070675 nonsynonymous SNV 0.365 0 24 hm5C_associated_SNPs_56101 0 0 0 0 1 TMEM82 chr1:16070655 3'AG 16070655 Downstream 21bp
chr11 8013706 8013706 1 + G T LUSC 8013703 + 8013683 8013723 41 TTTCTCCAAATGAGCTCATCCTGGGCTGGTAAGTTGGGGAG TTTCTCCAAATGAGCTCATCCTGTGCTGGTAAGTTGGGGAG < 41bp 0.790597214803569 0.412529644644898 0.42399883 0.11657587 prediction 0.581194429607139 Functional Loss - EIF3F ENSG00000175390 CDS Human protein_coding chr11:8013703 chr11:8013706 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_56102 0 0 1 0 2 EIF3F chr11:8013631 3'AG 8013631 Downstream 76bp
chr11 8013706 8013706 1 + G T LUSC 8013703 + 8013683 8013723 41 TTTCTCCAAATGAGCTCATCCTGGGCTGGTAAGTTGGGGAG TTTCTCCAAATGAGCTCATCCTGTGCTGGTAAGTTGGGGAG < 41bp 0.790597214803569 0.412529644644898 0.42399883 0.11657587 prediction 0.581194429607139 Functional Loss - EIF3F ENSG00000175390 CDS Human protein_coding chr11:8013703 chr11:8013706 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_56102 0 0 1 0 2 EIF3F chr11:8013710 5'GT 8013710 Upstream 5bp
chr9 39887061 39887061 1 + G T LUAD 39887059 + 39887039 39887079 41 CTTCGGACCTGCTTTCACAACTGCAGAGGTGAGGCACTTCC CTTCGGACCTGCTTTCACAACTTCAGAGGTGAGGCACTTCC < 41bp 0.82172562003823 0.531151931587633 0.34276253 0.35988337 prediction 0.581147376901194 Functional Loss - SPATA31A1 ENSG00000204848 CDS Human other chr9:39887059 chr9:39887061 synonymous SNV . 0 23 hm5C_associated_SNPs_56107 0 0 0 0 2 SPATA31A1 chr9:39887006 3'AG 39887006 Downstream 56bp
chr9 39887061 39887061 1 + G T LUAD 39887059 + 39887039 39887079 41 CTTCGGACCTGCTTTCACAACTGCAGAGGTGAGGCACTTCC CTTCGGACCTGCTTTCACAACTTCAGAGGTGAGGCACTTCC < 41bp 0.82172562003823 0.531151931587633 0.34276253 0.35988337 prediction 0.581147376901194 Functional Loss - SPATA31A1 ENSG00000204848 CDS Human other chr9:39887059 chr9:39887061 synonymous SNV . 0 23 hm5C_associated_SNPs_56107 0 0 0 0 2 SPATA31A1 chr9:39887066 5'GT 39887066 Upstream 6bp
chr5 94936650 94936650 1 + A T LUSC 94936646 + 94936626 94936666 41 ATGAACATAAAGTCAAAAACCTGCATCCACCCTGGATTCTG ATGAACATAAAGTCAAAAACCTGCTTCCACCCTGGATTCTG < 41bp 0.79056505031146 0.474185179711043 0.035374403 0.021206439 prediction 0.58113010062292 Functional Loss - ARSK ENSG00000164291 CDS Human protein_coding chr5:94936646 chr5:94936650 nonsynonymous SNV 0.023 1 25 hm5C_associated_SNPs_56109 0 0 1 0 1 ARSK chr5:94936551 3'AG 94936551 Downstream 100bp
chr15 40757633 40757633 1 + A T LUAD 40757629 + 40757609 40757649 41 GTGCTGACTTTTGCCGAGTACTGCAGGTAGGTGGTTCCCTG GTGCTGACTTTTGCCGAGTACTGCTGGTAGGTGGTTCCCTG < 41bp 0.790544000718848 0.470107116855979 0.5332524 0.37758476 prediction 0.581088001437696 Functional Loss - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40757629 chr15:40757633 nonsynonymous SNV 0.980 5 25 hm5C_associated_SNPs_56113 0 0 1 0 3 BAHD1 chr15:40757534 3'AG 40757534 Downstream 100bp
chr15 40757633 40757633 1 + A T LUAD 40757629 + 40757609 40757649 41 GTGCTGACTTTTGCCGAGTACTGCAGGTAGGTGGTTCCCTG GTGCTGACTTTTGCCGAGTACTGCTGGTAGGTGGTTCCCTG < 41bp 0.790544000718848 0.470107116855979 0.5332524 0.37758476 prediction 0.581088001437696 Functional Loss - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40757629 chr15:40757633 nonsynonymous SNV 0.980 5 25 hm5C_associated_SNPs_56113 0 0 1 0 3 BAHD1 chr15:40757543 3'AG 40757543 Downstream 91bp
chr15 40757633 40757633 1 + A T LUAD 40757629 + 40757609 40757649 41 GTGCTGACTTTTGCCGAGTACTGCAGGTAGGTGGTTCCCTG GTGCTGACTTTTGCCGAGTACTGCTGGTAGGTGGTTCCCTG < 41bp 0.790544000718848 0.470107116855979 0.5332524 0.37758476 prediction 0.581088001437696 Functional Loss - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40757629 chr15:40757633 nonsynonymous SNV 0.980 5 25 hm5C_associated_SNPs_56113 0 0 1 0 3 BAHD1 chr15:40757634 5'GT 40757634 Upstream 2bp
chr10 115529640 115529640 1 + G T READ 115529637 + 115529617 115529657 41 GGCTGTTGGCTCCAGCTCACCAAGAAATGGTCTCCAAGACA GGCTGTTGGCTCCAGCTCACCAATAAATGGTCTCCAAGACA < 41bp 0.790539607121648 0.406699001301832 0.14785656 0.016236931 prediction 0.581079214243296 Functional Loss - PLEKHS1 ENSG00000148735 CDS Human protein_coding chr10:115529637 chr10:115529640 nonsynonymous SNV 0.007 3 24 hm5C_associated_SNPs_56114 0 0 0 0 2 PLEKHS1 chr10:115529543 3'AG 115529543 Downstream 98bp
chr10 115529640 115529640 1 + G T READ 115529637 + 115529617 115529657 41 GGCTGTTGGCTCCAGCTCACCAAGAAATGGTCTCCAAGACA GGCTGTTGGCTCCAGCTCACCAATAAATGGTCTCCAAGACA < 41bp 0.790539607121648 0.406699001301832 0.14785656 0.016236931 prediction 0.581079214243296 Functional Loss - PLEKHS1 ENSG00000148735 CDS Human protein_coding chr10:115529637 chr10:115529640 nonsynonymous SNV 0.007 3 24 hm5C_associated_SNPs_56114 0 0 0 0 2 PLEKHS1 chr10:115529659 5'GT 115529659 Upstream 20bp
chr12 121659964 121659964 1 + G T UCEC 121659962 + 121659942 121659982 41 GCCGGCTCTGCCGGCACCCACAGCAACGGTACGAGCTTGTG GCCGGCTCTGCCGGCACCCACATCAACGGTACGAGCTTGTG < 41bp 0.790538942482473 0.464199683814974 0.39472923 0.09310961 prediction 0.581077884964946 Functional Loss - P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121659962 chr12:121659964 nonsynonymous SNV 0.589 4 23 hm5C_associated_SNPs_56115 0 0 1 0 2 P2RX4 chr12:121659897 3'AG 121659897 Downstream 68bp
chr12 121659964 121659964 1 + G T UCEC 121659962 + 121659942 121659982 41 GCCGGCTCTGCCGGCACCCACAGCAACGGTACGAGCTTGTG GCCGGCTCTGCCGGCACCCACATCAACGGTACGAGCTTGTG < 41bp 0.790538942482473 0.464199683814974 0.39472923 0.09310961 prediction 0.581077884964946 Functional Loss - P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121659962 chr12:121659964 nonsynonymous SNV 0.589 4 23 hm5C_associated_SNPs_56115 0 0 1 0 2 P2RX4 chr12:121659969 5'GT 121659969 Upstream 6bp
chr8 24349538 24349538 1 + G T UCEC 24349535 + 24349515 24349555 41 AGGGTCAATGGATTTCCTTGCAAGAACTCAGAAGGCTACTG AGGGTCAATGGATTTCCTTGCAATAACTCAGAAGGCTACTG < 41bp 0.790534357159092 0.414512297242696 0.49889103 0.22287506 prediction 0.581068714318184 Functional Loss - ADAM7 ENSG00000069206 CDS Human protein_coding chr8:24349535 chr8:24349538 nonsynonymous SNV 0.976 1 24 hm5C_associated_SNPs_56116 0 0 0 0 1 ADAM7 chr8:24349611 5'GT 24349611 Upstream 74bp
chr1 226016570 226016570 1 + G T UCEC 226016568 + 226016548 226016588 41 TCCGCAGCCAGGGAGGACGACAGCATCCGCCCTTTCAAGGT TCCGCAGCCAGGGAGGACGACATCATCCGCCCTTTCAAGGT < 41bp 0.85939210216711 0.568866027872234 0.25498736 0.13657632 prediction 0.581052148589754 Functional Loss - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226016568 chr1:226016570 nonsynonymous SNV 0.918 1 23 hm5C_associated_SNPs_56118 0 0 1 0 1 EPHX1 chr1:226016613 5'GT 226016613 Upstream 44bp
chr12 21175801 21175801 1 + G T LUSC 21175799 + 21175779 21175819 41 GATAGGTTGTGTGAAGGAATCTGGGTCACACATGTGGATCT GATAGGTTGTGTGAAGGAATCTTGGTCACACATGTGGATCT < 41bp 0.832586748745646 0.542081959167359 0.65202296 0.08825889 prediction 0.581009579156574 Functional Loss - SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21175799 chr12:21175801 nonsynonymous SNV 0.002 3 23 hm5C_associated_SNPs_56121 0 0 0 0 1 SLCO1B7 chr12:21175784 3'AG 21175784 Downstream 18bp
chr19 22255720 22255720 1 + G T UCEC 22255718 + 22255698 22255738 41 GATGTGATGTTAGAGAACTACAGAAACCTGGTCTTCCTGGG GATGTGATGTTAGAGAACTACATAAACCTGGTCTTCCTGGG < 41bp 0.790489757164775 0.479395552975649 0.42674366 0.15495494 prediction 0.580979514329551 Functional Loss - ZNF257 ENSG00000197134 CDS Human protein_coding chr19:22255718 chr19:22255720 nonsynonymous SNV 0.353 2 23 hm5C_associated_SNPs_56124 0 0 0 0 1 ZNF257 chr19:22255737 5'GT 22255737 Upstream 18bp
chr12 133727670 133727670 1 + G T SARC 133727668 + 133727648 133727688 41 TCACCAGGGAGGAGTGGAAGCTGCTGGACACTGCTCAGCAG TCACCAGGGAGGAGTGGAAGCTTCTGGACACTGCTCAGCAG < 41bp 0.836135231843778 0.545675955651858 0.22078016 0.067655414 prediction 0.58091855238384 Functional Loss - ZNF10 ENSG00000090612;ENSG00000256223;ENSG00000256825 CDS Human other chr12:133727668 chr12:133727670 synonymous SNV . 0 23 hm5C_associated_SNPs_56127 0 0 1 0 2 ZNF10 chr12:133727614 3'AG 133727614 Downstream 57bp
chr12 133727670 133727670 1 + G T SARC 133727668 + 133727648 133727688 41 TCACCAGGGAGGAGTGGAAGCTGCTGGACACTGCTCAGCAG TCACCAGGGAGGAGTGGAAGCTTCTGGACACTGCTCAGCAG < 41bp 0.836135231843778 0.545675955651858 0.22078016 0.067655414 prediction 0.58091855238384 Functional Loss - ZNF10 ENSG00000090612;ENSG00000256223;ENSG00000256825 CDS Human other chr12:133727668 chr12:133727670 synonymous SNV . 0 23 hm5C_associated_SNPs_56127 0 0 1 0 2 ZNF10 chr12:133727740 5'GT 133727740 Upstream 71bp
chr8 55047945 55047945 1 + G T COAD 55047942 + 55047922 55047962 41 TTAAAGCCGAATCCCGGCTCCAAGAAACCGGTAAATGGGTG TTAAAGCCGAATCCCGGCTCCAATAAACCGGTAAATGGGTG < 41bp 0.873990201737624 0.583535460116379 0.33874255 0.18953896 prediction 0.58090948324249 Functional Loss - MRPL15 ENSG00000137547 CDS Human protein_coding chr8:55047942 chr8:55047945 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_56128 0 0 1 0 1 MRPL15 chr8:55047951 5'GT 55047951 Upstream 7bp
chr6 41029549 41029549 1 + G T SKCM 41029547 + 41029527 41029567 41 GAATCCAAGGCCTTTCAGCCCTGGGAGGACATTCAGGAGAA GAATCCAAGGCCTTTCAGCCCTTGGAGGACATTCAGGAGAA < 41bp 0.824501894514086 0.534062602969246 0.8500079 0.6138716 prediction 0.58087858308968 Functional Loss - APOBEC2 ENSG00000124701 CDS Human protein_coding chr6:41029547 chr6:41029549 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_56130 0 0 0 0 1 APOBEC2 chr6:41029631 5'GT 41029631 Upstream 83bp
chr2 204732710 204732710 1 + G T LUSC 204732708 + 204732688 204732728 41 GGCACAAGGCTCAGCTGAACCTGGCTACCAGGACCTGGCCC GGCACAAGGCTCAGCTGAACCTTGCTACCAGGACCTGGCCC < 41bp 0.837909283210485 0.547482548152592 0.13260558 0.046206623 prediction 0.580853470115787 Functional Loss - CTLA4 ENSG00000163599 CDS Human protein_coding chr2:204732708 chr2:204732710 synonymous SNV . 0 23 hm5C_associated_SNPs_56131 0 0 0 0 1 CTLA4 chr2:204732774 5'GT 204732774 Upstream 65bp
chr19 37870038 37870038 1 + G T LUSC 37870036 + 37870016 37870056 41 TTTCAGGGGTTGGTGACCTTCAGAGATGTGGCGCTAGACTT TTTCAGGGGTTGGTGACCTTCATAGATGTGGCGCTAGACTT < 41bp 0.84679265390775 0.556383294144293 0.8927051 0.4066913 prediction 0.580818719526913 Functional Loss - ZNF527 ENSG00000189164 CDS Human protein_coding chr19:37870036 chr19:37870038 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_56135 0 0 1 0 1 ZNF527 chr19:37870022 3'AG 37870022 Downstream 17bp
chr9 117005815 117005815 1 + G T LUAD 117005812 + 117005792 117005832 41 GCCTGGCAGGAAGGGGTTTCCTGGGAGGCCCGGCCTGGATG GCCTGGCAGGAAGGGGTTTCCTGTGAGGCCCGGCCTGGATG < 41bp 0.883366730156191 0.592980722889877 0.9124783 0.38405764 prediction 0.580772014532629 Functional Loss - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117005812 chr9:117005815 nonsynonymous SNV 0.986 4 24 hm5C_associated_SNPs_56138 0 0 1 0 1 COL27A1 chr9:117005840 5'GT 117005840 Upstream 26bp
chr2 157407203 157407203 1 + G T UCEC 157407201 + 157407181 157407221 41 CAAAATGGATGATAAAGACGCAGCAGCTATCTGCCAGCCAA CAAAATGGATGATAAAGACGCATCAGCTATCTGCCAGCCAA < 41bp 0.79034097007841 0.460562371354623 0.23344886 0.072399884 prediction 0.580681940156821 Functional Loss - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407201 chr2:157407203 nonsynonymous SNV 0.008 0 23 hm5C_associated_SNPs_56143 0 0 1 0 2 GPD2 chr2:157407114 3'AG 157407114 Downstream 90bp
chr2 157407203 157407203 1 + G T UCEC 157407201 + 157407181 157407221 41 CAAAATGGATGATAAAGACGCAGCAGCTATCTGCCAGCCAA CAAAATGGATGATAAAGACGCATCAGCTATCTGCCAGCCAA < 41bp 0.79034097007841 0.460562371354623 0.23344886 0.072399884 prediction 0.580681940156821 Functional Loss - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407201 chr2:157407203 nonsynonymous SNV 0.008 0 23 hm5C_associated_SNPs_56143 0 0 1 0 2 GPD2 chr2:157407258 5'GT 157407258 Upstream 56bp
chr3 119232541 119232541 1 + G T GBM 119232539 + 119232519 119232559 41 AGGCCTGCGTGGCCTGGTGGCTGGTGGCATAATTGGAGCCT AGGCCTGCGTGGCCTGGTGGCTTGTGGCATAATTGGAGCCT < 41bp 0.790306172916608 0.458557814565021 0.8898338 0.6763822 prediction 0.580612345833217 Functional Loss - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119232539 chr3:119232541 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_56146 0 0 1 0 2 TIMMDC1 chr3:119232488 3'AG 119232488 Downstream 54bp
chr3 119232541 119232541 1 + G T GBM 119232539 + 119232519 119232559 41 AGGCCTGCGTGGCCTGGTGGCTGGTGGCATAATTGGAGCCT AGGCCTGCGTGGCCTGGTGGCTTGTGGCATAATTGGAGCCT < 41bp 0.790306172916608 0.458557814565021 0.8898338 0.6763822 prediction 0.580612345833217 Functional Loss - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119232539 chr3:119232541 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_56146 0 0 1 0 2 TIMMDC1 chr3:119232566 5'GT 119232566 Upstream 26bp
chr14 95108172 95108172 1 + G T LUAD 95108170 + 95108150 95108190 41 CAGCAGACCCAGGGGAAGCTCGGGGCCTGGGAGAAGGACCT CAGCAGACCCAGGGGAAGCTCGTGGCCTGGGAGAAGGACCT < 41bp 0.845271632673942 0.554976588078494 0.9140743 0.7878313 prediction 0.580590089190896 Functional Loss - SERPINA13P ENSG00000187483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr14:95108170 chr14:95108172 . . 0 23 hm5C_associated_SNPs_56148 0 0 0 0 1 SERPINA13P chr14:95108237 5'GT 95108237 Upstream 66bp
chr10 17271421 17271421 1 - C A LUSC 17271424 - 17271404 17271444 41 GAGGACACGGACCTGGTGGACATGGCTGCGGAGGGTGGCGA GAGGACACGGACCTGGTGGACATTGCTGCGGAGGGTGGCGA < 41bp 0.790292570086425 0.423922101579807 0.40195245 0.24570423 prediction 0.580585140172851 Functional Loss - VIM-AS1 ENSG00000229124 ncRNA_exonic Human antisense chr10:17271424 chr10:17271421 . . 0 24 hm5C_associated_SNPs_56149 0 0 0 0 1 VIM-AS1 chr10:17271344 5'GT 17271344 Upstream 78bp
chrX 133609230 133609230 1 + G T LUSC 133609227 + 133609207 133609247 41 GTAGGACTGAACGTCTTGCTCGAGATGTGATGAAGGAGATG GTAGGACTGAACGTCTTGCTCGATATGTGATGAAGGAGATG < 41bp 0.889391176423696 0.599112930391139 0.8856745 0.3436854 prediction 0.580556492065113 Functional Loss - HPRT1 ENSG00000165704 CDS Human protein_coding chrX:133609227 chrX:133609230 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_56152 0 0 1 1 1 HPRT1 chrX:133609211 3'AG 133609211 Downstream 20bp
chr11 86518702 86518702 1 + G T LUAD 86518699 + 86518679 86518719 41 GCTCGGCATGGCAGGGATTCCAGGGCTCCTCTTCCTTCTCT GCTCGGCATGGCAGGGATTCCAGTGCTCCTCTTCCTTCTCT < 41bp 0.884767545816062 0.594490749389066 0.92050326 0.21049586 prediction 0.580553592853991 Functional Loss - PRSS23 ENSG00000150687 CDS Human protein_coding chr11:86518699 chr11:86518702 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_56153 0 0 1 0 1 PRSS23 chr11:86518673 3'AG 86518673 Downstream 30bp
chr1 116563495 116563495 1 + G T LUSC 116563493 + 116563473 116563513 41 GAATGTGTGGGCACCGCCTACTGGGCACTTGCAGGTACTAC GAATGTGTGGGCACCGCCTACTTGGCACTTGCAGGTACTAC < 41bp 0.790265407956458 0.467491911279899 0.019803286 0.01733023 prediction 0.580530815912917 Functional Loss - SLC22A15 ENSG00000163393 CDS Human protein_coding chr1:116563493 chr1:116563495 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_56156 0 0 0 0 1 SLC22A15 chr1:116563506 5'GT 116563506 Upstream 12bp
chrX 54841723 54841723 1 + G T LUAD 54841720 + 54841700 54841740 41 AGGAATGGGCAGCTCAGTACCGAGAGGCGATGGAAGCGGAT AGGAATGGGCAGCTCAGTACCGATAGGCGATGGAAGCGGAT < 41bp 0.883911466812918 0.593650101233573 0.89948666 0.31195882 prediction 0.580522731158691 Functional Loss - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54841720 chrX:54841723 stopgain 1.000 1 24 hm5C_associated_SNPs_56157 0 0 1 0 1 MAGED2 chrX:54841681 3'AG 54841681 Downstream 43bp
chr16 5058649 5058649 1 + G T UCEC 5058647 + 5058627 5058667 41 GCCGGGAGGGGGAGAGCATCCAGGTTTGCATTTTCTGGACC GCCGGGAGGGGGAGAGCATCCATGTTTGCATTTTCTGGACC < 41bp 0.855850642071744 0.565636767403927 0.8482512 0.3342045 prediction 0.580427749335634 Functional Loss - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5058647 chr16:5058649 nonsynonymous SNV 0.940 1 23 hm5C_associated_SNPs_56161 0 0 0 0 1 SEC14L5 chr16:5058649 5'GT 5058649 Upstream 1bp
chr3 44673645 44673645 1 + G T UCEC 44673642 + 44673622 44673662 41 CCTTTCCCAGGAAGAGAACCCAAGAAATCAATTAATGGCAC CCTTTCCCAGGAAGAGAACCCAATAAATCAATTAATGGCAC < 41bp 0.88583883932596 0.595632504069631 0.84615767 0.69888926 prediction 0.580412670512657 Functional Loss - ZNF197;ZNF660-ZNF197 ENSG00000186448 CDS Human protein_coding chr3:44673642 chr3:44673645 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_56162 0 0 1 0 2 ZNF197;ZNF660-ZNF197 chr3:44673597 3'AG 44673597 Downstream 49bp
chr3 44673645 44673645 1 + G T UCEC 44673642 + 44673622 44673662 41 CCTTTCCCAGGAAGAGAACCCAAGAAATCAATTAATGGCAC CCTTTCCCAGGAAGAGAACCCAATAAATCAATTAATGGCAC < 41bp 0.88583883932596 0.595632504069631 0.84615767 0.69888926 prediction 0.580412670512657 Functional Loss - ZNF197;ZNF660-ZNF197 ENSG00000186448 CDS Human protein_coding chr3:44673642 chr3:44673645 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_56162 0 0 1 0 2 ZNF197;ZNF660-ZNF197 chr3:44673688 5'GT 44673688 Upstream 44bp
chr2 198334873 198334873 1 + G T COAD 198334870 + 198334850 198334890 41 CCCAGGTCTTCCTGGCTACCCAAGAACTTGTACCTTGGATT CCCAGGTCTTCCTGGCTACCCAATAACTTGTACCTTGGATT < 41bp 0.790172496557497 0.418266763661364 0.36087108 0.19266683 prediction 0.580344993114994 Functional Loss - COQ10B ENSG00000115520 CDS Human protein_coding chr2:198334870 chr2:198334873 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_56165 0 0 1 0 2 COQ10B chr2:198334794 3'AG 198334794 Downstream 80bp
chr2 198334873 198334873 1 + G T COAD 198334870 + 198334850 198334890 41 CCCAGGTCTTCCTGGCTACCCAAGAACTTGTACCTTGGATT CCCAGGTCTTCCTGGCTACCCAATAACTTGTACCTTGGATT < 41bp 0.790172496557497 0.418266763661364 0.36087108 0.19266683 prediction 0.580344993114994 Functional Loss - COQ10B ENSG00000115520 CDS Human protein_coding chr2:198334870 chr2:198334873 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_56165 0 0 1 0 2 COQ10B chr2:198334895 5'GT 198334895 Upstream 23bp
chr4 73012740 73012740 1 + G T LUAD 73012737 + 73012717 73012757 41 TTTAAACCAAAGCTCACTATCAAGACAGCGTTTGTCATTAT TTTAAACCAAAGCTCACTATCAATACAGCGTTTGTCATTAT < 41bp 0.790156606386936 0.418403747166204 0.90883595 0.10001743 prediction 0.580313212773873 Functional Loss - NPFFR2 ENSG00000056291 CDS Human protein_coding chr4:73012737 chr4:73012740 nonsynonymous SNV 0.042 0 24 hm5C_associated_SNPs_56167 0 0 0 0 1 NPFFR2 chr4:73012695 3'AG 73012695 Downstream 46bp
chrX 100243193 100243193 1 + G T UCEC 100243191 + 100243171 100243211 41 TCTTCCACCAGCTTCTCCACCAGAACAGGAATGTCAAAGGA TCTTCCACCAGCTTCTCCACCATAACAGGAATGTCAAAGGA < 41bp 0.790146449375155 0.472842323729878 0.503415 0.19078413 prediction 0.58029289875031 Functional Loss - ARL13A ENSG00000174225 CDS Human protein_coding chrX:100243191 chrX:100243193 nonsynonymous SNV 0.006 1 23 hm5C_associated_SNPs_56169 0 0 0 0 2 ARL13A chrX:100243182 3'AG 100243182 Downstream 12bp
chrX 100243193 100243193 1 + G T UCEC 100243191 + 100243171 100243211 41 TCTTCCACCAGCTTCTCCACCAGAACAGGAATGTCAAAGGA TCTTCCACCAGCTTCTCCACCATAACAGGAATGTCAAAGGA < 41bp 0.790146449375155 0.472842323729878 0.503415 0.19078413 prediction 0.58029289875031 Functional Loss - ARL13A ENSG00000174225 CDS Human protein_coding chrX:100243191 chrX:100243193 nonsynonymous SNV 0.006 1 23 hm5C_associated_SNPs_56169 0 0 0 0 2 ARL13A chrX:100243272 5'GT 100243272 Upstream 80bp
chr1 247607377 247607377 1 + G T LUAD 247607374 + 247607354 247607394 41 TTTACCTGCGAGGCAACACTCTCGGAGACAAGGGGATCAAA TTTACCTGCGAGGCAACACTCTCTGAGACAAGGGGATCAAA < 41bp 0.790146274227104 0.414767504200843 0.8720364 0.22060585 prediction 0.580292548454208 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247607374 chr1:247607377 stopgain 0.035 0 24 hm5C_associated_SNPs_56170 0 0 0 0 1 NLRP3 chr1:247607444 5'GT 247607444 Upstream 68bp
chr5 145634590 145634590 1 + G T UCEC 145634587 + 145634567 145634607 41 TCAGTACAGACAGTTCTTTTCAAGAACTCAGACACAGCGTC TCAGTACAGACAGTTCTTTTCAATAACTCAGACACAGCGTC < 41bp 0.790107391352467 0.426225834800644 0.53831625 0.07172519 prediction 0.580214782704933 Functional Loss - RBM27 ENSG00000091009 CDS Human protein_coding chr5:145634587 chr5:145634590 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_56173 0 0 1 0 2 RBM27 chr5:145634506 3'AG 145634506 Downstream 85bp
chr5 145634590 145634590 1 + G T UCEC 145634587 + 145634567 145634607 41 TCAGTACAGACAGTTCTTTTCAAGAACTCAGACACAGCGTC TCAGTACAGACAGTTCTTTTCAATAACTCAGACACAGCGTC < 41bp 0.790107391352467 0.426225834800644 0.53831625 0.07172519 prediction 0.580214782704933 Functional Loss - RBM27 ENSG00000091009 CDS Human protein_coding chr5:145634587 chr5:145634590 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_56173 0 0 1 0 2 RBM27 chr5:145634655 5'GT 145634655 Upstream 66bp
chr7 34867127 34867127 1 + G T SKCM 34867125 + 34867105 34867145 41 TCCAACGGTGAAGTGCAGTGCTGGGCCCTGTGGCCTGACGA TCCAACGGTGAAGTGCAGTGCTTGGCCCTGTGGCCTGACGA < 41bp 0.790070785576958 0.456482455579815 0.13138103 0.10144451 prediction 0.580141571153916 Functional Loss - NPSR1 ENSG00000187258 CDS Human protein_coding chr7:34867125 chr7:34867127 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_56175 0 0 0 0 1 NPSR1 chr7:34867214 5'GT 34867214 Upstream 88bp
chr19 8503325 8503325 1 + G T UCEC 8503323 + 8503303 8503343 41 CCGAGTGGAGAAAGACCAACCAGAAAGTTCGCCTGAAGATC CCGAGTGGAGAAAGACCAACCATAAAGTTCGCCTGAAGATC < 41bp 0.823914995046184 0.533845973090244 0.44293222 0.29001462 prediction 0.58013804391188 Functional Loss - MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8503323 chr19:8503325 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_56176 0 0 0 0 1 MARCH2 chr19:8503272 3'AG 8503272 Downstream 54bp
chr6 111213519 111213519 1 + A T LUSC 111213515 + 111213495 111213535 41 TATTTAGGTACTTATATACTCTGGATTTCCCAGAGAGTCGG TATTTAGGTACTTATATACTCTGGTTTTCCCAGAGAGTCGG < 41bp 0.806838727900798 0.516776219579646 0.12646064 0.18741712 prediction 0.580125016642304 Functional Loss - AMD1 ENSG00000123505 CDS Human protein_coding chr6:111213515 chr6:111213519 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_56177 0 0 1 0 1 AMD1 chr6:111213502 3'AG 111213502 Downstream 18bp
chr19 49100047 49100047 1 + G T LUSC 49100044 + 49100024 49100064 41 GTGGGTTCCTGGGCCGTCCGCTGGGCAAGGAGGCACTGGGC GTGGGTTCCTGGGCCGTCCGCTGTGCAAGGAGGCACTGGGC < 41bp 0.904559140544882 0.614519416939283 0.77142835 0.25065738 prediction 0.580079447211199 Functional Loss - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49100044 chr19:49100047 nonsynonymous SNV 0.221 2 24 hm5C_associated_SNPs_56181 0 0 1 0 1 SULT2B1 chr19:49099996 3'AG 49099996 Downstream 52bp
chr20 42695453 42695453 1 + G T HNSC 42695450 + 42695430 42695470 41 AACCCCACCAGCAGCGGGGACTGGGACAGCAGCTACCCCAG AACCCCACCAGCAGCGGGGACTGTGACAGCAGCTACCCCAG < 41bp 0.790038671381838 0.401718464504619 0.39605087 0.08496356 prediction 0.580077342763675 Functional Loss - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695450 chr20:42695453 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_56182 0 0 0 0 2 TOX2 chr20:42695370 3'AG 42695370 Downstream 84bp
chr20 42695453 42695453 1 + G T HNSC 42695450 + 42695430 42695470 41 AACCCCACCAGCAGCGGGGACTGGGACAGCAGCTACCCCAG AACCCCACCAGCAGCGGGGACTGTGACAGCAGCTACCCCAG < 41bp 0.790038671381838 0.401718464504619 0.39605087 0.08496356 prediction 0.580077342763675 Functional Loss - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695450 chr20:42695453 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_56182 0 0 0 0 2 TOX2 chr20:42695497 5'GT 42695497 Upstream 45bp
chr8 39836623 39836623 1 + G T LUSC 39836621 + 39836601 39836641 41 TGCCAGTTCCTGAAGGGTCACCGGGAGCAGCGCCTGGCCCA TGCCAGTTCCTGAAGGGTCACCTGGAGCAGCGCCTGGCCCA < 41bp 0.790036414528 0.435299699469471 0.9183737 0.35945502 prediction 0.580072829056001 Functional Loss - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39836621 chr8:39836623 nonsynonymous SNV 0.922 2 23 hm5C_associated_SNPs_56184 0 0 0 0 2 IDO2 chr8:39836586 3'AG 39836586 Downstream 38bp
chr8 39836623 39836623 1 + G T LUSC 39836621 + 39836601 39836641 41 TGCCAGTTCCTGAAGGGTCACCGGGAGCAGCGCCTGGCCCA TGCCAGTTCCTGAAGGGTCACCTGGAGCAGCGCCTGGCCCA < 41bp 0.790036414528 0.435299699469471 0.9183737 0.35945502 prediction 0.580072829056001 Functional Loss - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39836621 chr8:39836623 nonsynonymous SNV 0.922 2 23 hm5C_associated_SNPs_56184 0 0 0 0 2 IDO2 chr8:39836705 5'GT 39836705 Upstream 83bp
chr1 109270478 109270478 1 + G T LUSC 109270476 + 109270456 109270496 41 CCCGTGTTGGTGTCCAGTGACAGAGTTGAGATTGTCTGGTC CCCGTGTTGGTGTCCAGTGACATAGTTGAGATTGTCTGGTC < 41bp 0.79003060886589 0.46895263660559 0.84242 0.38696194 prediction 0.58006121773178 Functional Loss - FNDC7 ENSG00000143107 CDS Human protein_coding chr1:109270476 chr1:109270478 nonsynonymous SNV 0.986 1 23 hm5C_associated_SNPs_56186 0 0 0 0 1 FNDC7 chr1:109270430 3'AG 109270430 Downstream 49bp
chr19 36273517 36273517 1 + G T LUAD 36273515 + 36273495 36273535 41 TCAGGAGGCCATGTCAGTGCCTGGGGAGGAGGAGCGTCTGG TCAGGAGGCCATGTCAGTGCCTTGGGAGGAGGAGCGTCTGG < 41bp 0.860857540098133 0.570831368327591 0.78486156 0.613521 prediction 0.580052343541084 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36273515 chr19:36273517 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_56188 0 0 1 0 2 ARHGAP33 chr19:36273419 3'AG 36273419 Downstream 99bp
chr19 36273517 36273517 1 + G T LUAD 36273515 + 36273495 36273535 41 TCAGGAGGCCATGTCAGTGCCTGGGGAGGAGGAGCGTCTGG TCAGGAGGCCATGTCAGTGCCTTGGGAGGAGGAGCGTCTGG < 41bp 0.860857540098133 0.570831368327591 0.78486156 0.613521 prediction 0.580052343541084 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36273515 chr19:36273517 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_56188 0 0 1 0 2 ARHGAP33 chr19:36273581 5'GT 36273581 Upstream 65bp
chr12 110345418 110345418 1 + G T COAD 110345416 + 110345396 110345436 41 GGCGCTAGAAAGGATGAAAGCTGAAGAGGAGAGGAGGCAGC GGCGCTAGAAAGGATGAAAGCTTAAGAGGAGAGGAGGCAGC < 41bp 0.853849064174035 0.563835281161973 0.7016336 0.5087951 prediction 0.580027566024124 Functional Loss - TCHP ENSG00000139437 CDS Human protein_coding chr12:110345416 chr12:110345418 stopgain 0.364 1 23 hm5C_associated_SNPs_56190 0 0 1 0 2 TCHP chr12:110345331 3'AG 110345331 Downstream 88bp
chr12 110345418 110345418 1 + G T COAD 110345416 + 110345396 110345436 41 GGCGCTAGAAAGGATGAAAGCTGAAGAGGAGAGGAGGCAGC GGCGCTAGAAAGGATGAAAGCTTAAGAGGAGAGGAGGCAGC < 41bp 0.853849064174035 0.563835281161973 0.7016336 0.5087951 prediction 0.580027566024124 Functional Loss - TCHP ENSG00000139437 CDS Human protein_coding chr12:110345416 chr12:110345418 stopgain 0.364 1 23 hm5C_associated_SNPs_56190 0 0 1 0 2 TCHP chr12:110345504 5'GT 110345504 Upstream 87bp
chr16 67235933 67235933 1 + G T OV 67235931 + 67235911 67235951 41 TGCCCCCCGGTCTGCTGGCCCTGGACAACATGTTGTACTTC TGCCCCCCGGTCTGCTGGCCCTTGACAACATGTTGTACTTC < 41bp 0.848469137650417 0.558474208781298 0.5221142 0.13692486 prediction 0.579989857738236 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67235931 chr16:67235933 synonymous SNV . 0 23 hm5C_associated_SNPs_56195 0 0 0 0 2 ELMO3 chr16:67235880 3'AG 67235880 Downstream 54bp
chr16 67235933 67235933 1 + G T OV 67235931 + 67235911 67235951 41 TGCCCCCCGGTCTGCTGGCCCTGGACAACATGTTGTACTTC TGCCCCCCGGTCTGCTGGCCCTTGACAACATGTTGTACTTC < 41bp 0.848469137650417 0.558474208781298 0.5221142 0.13692486 prediction 0.579989857738236 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67235931 chr16:67235933 synonymous SNV . 0 23 hm5C_associated_SNPs_56195 0 0 0 0 2 ELMO3 chr16:67235981 5'GT 67235981 Upstream 49bp
chr4 178260995 178260995 1 + G T UCEC 178260993 + 178260973 178261013 41 ATGAAAATGATACGTGATTTCAGCATTCTCTTTTACAGGGT ATGAAAATGATACGTGATTTCATCATTCTCTTTTACAGGGT < 41bp 0.795884080728715 0.505895879210401 0.23286256 0.10358417 prediction 0.579976403036628 Functional Loss - NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178260993 chr4:178260995 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_56198 0 0 0 0 1 NEIL3 chr4:178260937 3'AG 178260937 Downstream 59bp
chr16 25162906 25162906 1 + G T CESC 25162903 + 25162883 25162923 41 CTCCCCTATCCAGCCCCATTCTAGAACTGCATTCAGAGGAC CTCCCCTATCCAGCCCCATTCTATAACTGCATTCAGAGGAC < 41bp 0.789959980847447 0.405168758848195 0.25231534 0.1442635 prediction 0.579919961694894 Functional Loss - LCMT1 ENSG00000205629 CDS Human protein_coding chr16:25162903 chr16:25162906 stopgain 0.884 1 24 hm5C_associated_SNPs_56202 0 0 1 0 1 LCMT1 chr16:25162875 3'AG 25162875 Downstream 32bp
chr16 614287 614287 1 + G T UCEC 614285 + 614265 614305 41 GGGAGCTGGAGCGGGCAGCCCAGAGTGACCCCAGGAGGAGG GGGAGCTGGAGCGGGCAGCCCATAGTGACCCCAGGAGGAGG < 41bp 0.789953552018637 0.452735291783488 0.38739756 0.22451377 prediction 0.579907104037275 Functional Loss - PRR35 ENSG00000161992 CDS Human protein_coding chr16:614285 chr16:614287 nonsynonymous SNV 0.008 2 23 hm5C_associated_SNPs_56205 0 0 0 0 1 PRR35 chr16:614376 5'GT 614376 Upstream 90bp
chr17 42818802 42818802 1 + G C LUSC 42818798 + 42818778 42818818 41 CCTTTGAGGCCCCGACGACCCTGGGCAGCATGCACCATACC CCTTTGAGGCCCCGACGACCCTGGCCAGCATGCACCATACC < 41bp 0.791341367850272 0.50139558641367 0.7678919 0.52310103 prediction 0.579891562873205 Functional Loss - DBF4B ENSG00000161692 CDS Human protein_coding chr17:42818798 chr17:42818802 nonsynonymous SNV 0.022 0 25 hm5C_associated_SNPs_56206 0 0 1 0 2 DBF4B chr17:42818704 3'AG 42818704 Downstream 99bp
chr17 42818802 42818802 1 + G C LUSC 42818798 + 42818778 42818818 41 CCTTTGAGGCCCCGACGACCCTGGGCAGCATGCACCATACC CCTTTGAGGCCCCGACGACCCTGGCCAGCATGCACCATACC < 41bp 0.791341367850272 0.50139558641367 0.7678919 0.52310103 prediction 0.579891562873205 Functional Loss - DBF4B ENSG00000161692 CDS Human protein_coding chr17:42818798 chr17:42818802 nonsynonymous SNV 0.022 0 25 hm5C_associated_SNPs_56206 0 0 1 0 2 DBF4B chr17:42818769 3'AG 42818769 Downstream 34bp
chr1 155149471 155149471 1 + G T STAD 155149468 + 155149448 155149488 41 ACTGCAAGACATGCCAACGCCTGGTATGTCAACTCTGCCGG ACTGCAAGACATGCCAACGCCTGTTATGTCAACTCTGCCGG < 41bp 0.789944274391212 0.424038164445135 0.2303868 0.07074121 prediction 0.579888548782425 Functional Loss - TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155149468 chr1:155149471 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_56207 0 0 0 0 2 TRIM46 chr1:155149408 3'AG 155149408 Downstream 64bp
chr1 155149471 155149471 1 + G T STAD 155149468 + 155149448 155149488 41 ACTGCAAGACATGCCAACGCCTGGTATGTCAACTCTGCCGG ACTGCAAGACATGCCAACGCCTGTTATGTCAACTCTGCCGG < 41bp 0.789944274391212 0.424038164445135 0.2303868 0.07074121 prediction 0.579888548782425 Functional Loss - TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155149468 chr1:155149471 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_56207 0 0 0 0 2 TRIM46 chr1:155149551 5'GT 155149551 Upstream 81bp
chr1 170964589 170964589 1 + G T UCEC 170964587 + 170964567 170964607 41 CCTACAGGAAAGCGGTGGCCCAGTATTTCCCCCAGCTCTTG CCTACAGGAAAGCGGTGGCCCATTATTTCCCCCAGCTCTTG < 41bp 0.789908015631071 0.450485698013523 0.0759401 0.052775472 prediction 0.579816031262143 Functional Loss - MROH9 ENSG00000117501 CDS Human protein_coding chr1:170964587 chr1:170964589 nonsynonymous SNV 0.013 3 23 hm5C_associated_SNPs_56210 0 0 0 0 2 MROH9 chr1:170964530 3'AG 170964530 Downstream 60bp
chr1 170964589 170964589 1 + G T UCEC 170964587 + 170964567 170964607 41 CCTACAGGAAAGCGGTGGCCCAGTATTTCCCCCAGCTCTTG CCTACAGGAAAGCGGTGGCCCATTATTTCCCCCAGCTCTTG < 41bp 0.789908015631071 0.450485698013523 0.0759401 0.052775472 prediction 0.579816031262143 Functional Loss - MROH9 ENSG00000117501 CDS Human protein_coding chr1:170964587 chr1:170964589 nonsynonymous SNV 0.013 3 23 hm5C_associated_SNPs_56210 0 0 0 0 2 MROH9 chr1:170964672 5'GT 170964672 Upstream 84bp
chr19 5040020 5040020 1 + G T UCEC 5040017 + 5039997 5040037 41 TACCGCCGCCTGGCCAACAGCGAGAAGTACGCGGGGCGGGC TACCGCCGCCTGGCCAACAGCGATAAGTACGCGGGGCGGGC < 41bp 0.789907976433027 0.416058303053931 0.84691095 0.7079078 prediction 0.579815952866054 Functional Loss - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5040017 chr19:5040020 nonsynonymous SNV 0.875 1 24 hm5C_associated_SNPs_56211 0 0 1 0 1 KDM4B chr19:5040022 5'GT 5040022 Upstream 3bp
chr1 19018403 19018403 1 + G T LUAD 19018400 + 19018380 19018420 41 ACTACCCAGACATATACACCCGCGAGGAGCTGGCGCAGAGG ACTACCCAGACATATACACCCGCTAGGAGCTGGCGCAGAGG < 41bp 0.89266275461072 0.602757627325893 0.4881501 0.13196984 prediction 0.579810254569653 Functional Loss - PAX7 ENSG00000009709 CDS Human protein_coding chr1:19018400 chr1:19018403 stopgain 0.996 1 24 hm5C_associated_SNPs_56212 0 0 0 0 1 PAX7 chr1:19018447 5'GT 19018447 Upstream 45bp
chr11 47289839 47289839 1 + A C LIHC 47289835 + 47289815 47289855 41 GGCCCAACGTGCAGGACCAGCTCCAGGTAGAGAGGCTGCAG GGCCCAACGTGCAGGACCAGCTCCCGGTAGAGAGGCTGCAG < 41bp 0.789853859558531 0.360530269875319 0.6575254 0.24400839 prediction 0.579707719117062 Functional Loss - NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47289835 chr11:47289839 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_56217 0 0 0 0 2 NR1H3 chr11:47289812 3'AG 47289812 Downstream 28bp
chr11 47289839 47289839 1 + A C LIHC 47289835 + 47289815 47289855 41 GGCCCAACGTGCAGGACCAGCTCCAGGTAGAGAGGCTGCAG GGCCCAACGTGCAGGACCAGCTCCCGGTAGAGAGGCTGCAG < 41bp 0.789853859558531 0.360530269875319 0.6575254 0.24400839 prediction 0.579707719117062 Functional Loss - NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47289835 chr11:47289839 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_56217 0 0 0 0 2 NR1H3 chr11:47289906 5'GT 47289906 Upstream 68bp
chr6 17601330 17601330 1 + G T LUAD 17601327 + 17601307 17601347 41 TCCGCAGCCCCTTCGCGAAGCCCGAGCGAGACCGGGCGACA TCCGCAGCCCCTTCGCGAAGCCCTAGCGAGACCGGGCGACA < 41bp 0.789846980990218 0.421324757585659 0.100093216 0.01907754 prediction 0.579693961980436 Functional Loss - FAM8A1 ENSG00000137414 CDS Human protein_coding chr6:17601327 chr6:17601330 synonymous SNV . 0 24 hm5C_associated_SNPs_56218 0 0 1 0 1 FAM8A1 chr6:17601352 5'GT 17601352 Upstream 23bp
chr22 19495305 19495305 1 + G T SARC 19495302 + 19495282 19495322 41 TTTCCAGTCTTCCCCTGAAGCAGGTGAAGCAGAAGTTCCAG TTTCCAGTCTTCCCCTGAAGCAGTTGAAGCAGAAGTTCCAG < 41bp 0.789821595499067 0.395542825594208 0.92995805 0.35759458 prediction 0.579643190998134 Functional Loss - CDC45 ENSG00000093009 CDS Human protein_coding chr22:19495302 chr22:19495305 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_56221 0 0 1 0 2 CDC45 chr22:19495289 3'AG 19495289 Downstream 17bp
chr22 19495305 19495305 1 + G T SARC 19495302 + 19495282 19495322 41 TTTCCAGTCTTCCCCTGAAGCAGGTGAAGCAGAAGTTCCAG TTTCCAGTCTTCCCCTGAAGCAGTTGAAGCAGAAGTTCCAG < 41bp 0.789821595499067 0.395542825594208 0.92995805 0.35759458 prediction 0.579643190998134 Functional Loss - CDC45 ENSG00000093009 CDS Human protein_coding chr22:19495302 chr22:19495305 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_56221 0 0 1 0 2 CDC45 chr22:19495387 5'GT 19495387 Upstream 83bp
chr3 30729974 30729974 1 + G T UCEC 30729972 + 30729952 30729992 41 GTTGAGAGATCGAGGGCGACCAGAAATTCCCAGCTTCTGGC GTTGAGAGATCGAGGGCGACCATAAATTCCCAGCTTCTGGC < 41bp 0.850970979988517 0.561153777416129 0.80177355 0.29362524 prediction 0.579634405144777 Functional Loss - TGFBR2 ENSG00000163513 CDS Human protein_coding chr3:30729972 chr3:30729974 stopgain 0.996 1 23 hm5C_associated_SNPs_56222 1 0 1 0 2 TGFBR2 chr3:30729876 3'AG 30729876 Downstream 99bp
chr3 30729974 30729974 1 + G T UCEC 30729972 + 30729952 30729992 41 GTTGAGAGATCGAGGGCGACCAGAAATTCCCAGCTTCTGGC GTTGAGAGATCGAGGGCGACCATAAATTCCCAGCTTCTGGC < 41bp 0.850970979988517 0.561153777416129 0.80177355 0.29362524 prediction 0.579634405144777 Functional Loss - TGFBR2 ENSG00000163513 CDS Human protein_coding chr3:30729972 chr3:30729974 stopgain 0.996 1 23 hm5C_associated_SNPs_56222 1 0 1 0 2 TGFBR2 chr3:30730003 5'GT 30730003 Upstream 30bp
chr22 37272127 37272127 1 + A T LUAD 37272123 + 37272103 37272143 41 CTCCCCTATTGAAAGACCTGCTGGAGCTCACAAGGTGAGGG CTCCCCTATTGAAAGACCTGCTGGTGCTCACAAGGTGAGGG < 41bp 0.789813523462607 0.480271793054129 0.32862505 0.2470778 prediction 0.579627046925214 Functional Loss - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37272123 chr22:37272127 nonsynonymous SNV 0.957 0 25 hm5C_associated_SNPs_56223 0 0 0 0 2 NCF4 chr22:37272071 3'AG 37272071 Downstream 57bp
chr22 37272127 37272127 1 + A T LUAD 37272123 + 37272103 37272143 41 CTCCCCTATTGAAAGACCTGCTGGAGCTCACAAGGTGAGGG CTCCCCTATTGAAAGACCTGCTGGTGCTCACAAGGTGAGGG < 41bp 0.789813523462607 0.480271793054129 0.32862505 0.2470778 prediction 0.579627046925214 Functional Loss - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37272123 chr22:37272127 nonsynonymous SNV 0.957 0 25 hm5C_associated_SNPs_56223 0 0 0 0 2 NCF4 chr22:37272136 5'GT 37272136 Upstream 10bp
chr14 23847958 23847958 1 + G T SARC 23847955 + 23847935 23847975 41 GCAAAGGTCCAGCCCCAGCCCTGGCCTGGCTTGACCCCCCC GCAAAGGTCCAGCCCCAGCCCTGTCCTGGCTTGACCCCCCC < 41bp 0.78980971774616 0.400496234448977 0.28564754 0.21908873 prediction 0.579619435492321 Functional Loss - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23847955 chr14:23847958 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_56224 0 0 0 0 1 CMTM5 chr14:23847878 3'AG 23847878 Downstream 81bp
chr7 99459331 99459331 1 + G C OV 99459330 + 99459310 99459350 41 CCCAGTTGTTAGTAGAGTTACGAGAGTCTGCAAGAAAGATA CCCAGTTGTTAGTAGAGTTACCAGAGTCTGCAAGAAAGATA < 41bp 0.795433615704887 0.505650200845874 0.36236417 0.23760235 prediction 0.579566829718026 Functional Loss - CYP3A43 ENSG00000021461 CDS Human protein_coding chr7:99459330 chr7:99459331 synonymous SNV . 0 22 hm5C_associated_SNPs_56227 0 0 0 0 1 CYP3A43 chr7:99459236 3'AG 99459236 Downstream 96bp
chr17 32962028 32962028 1 + G T UCEC 32962026 + 32962006 32962046 41 ACCTAGTCAGTGACTTCATGCGGGTGGGCGATCCCCGAGTG ACCTAGTCAGTGACTTCATGCGTGTGGGCGATCCCCGAGTG < 41bp 0.857580367659448 0.567808959330854 0.7995973 0.21454942 prediction 0.57954281665719 Functional Loss - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32962026 chr17:32962028 synonymous SNV . 0 23 hm5C_associated_SNPs_56230 0 0 1 0 1 TMEM132E chr17:32962106 5'GT 32962106 Upstream 79bp
chr12 57389029 57389029 1 + G T STAD 57389026 + 57389006 57389046 41 CCCAGCTGGGGGCCTGGCCCCTCGGAGGGGGTCACCGCAGT CCCAGCTGGGGGCCTGGCCCCTCTGAGGGGGTCACCGCAGT < 41bp 0.890265652878759 0.600495407838529 0.67919 0.23979738 prediction 0.57954049008046 Functional Loss - GPR182 ENSG00000166856 CDS Human protein_coding chr12:57389026 chr12:57389029 synonymous SNV . 0 24 hm5C_associated_SNPs_56231 0 0 0 0 1 GPR182 chr12:57388978 3'AG 57388978 Downstream 52bp
chr1 26597551 26597551 1 + G T LGG 26597549 + 26597529 26597569 41 GGAGACCAGTGGAGAAGGTCCAGAAGTGGAAATGGAGTCCT GGAGACCAGTGGAGAAGGTCCATAAGTGGAAATGGAGTCCT < 41bp 0.846088788823323 0.556328856029132 0.23874804 0.13691473 prediction 0.579519865588382 Functional Loss - CEP85 ENSG00000130695 CDS Human protein_coding chr1:26597549 chr1:26597551 stopgain 0.607 0 23 hm5C_associated_SNPs_56233 0 0 1 0 2 CEP85 chr1:26597505 3'AG 26597505 Downstream 47bp
chr1 26597551 26597551 1 + G T LGG 26597549 + 26597529 26597569 41 GGAGACCAGTGGAGAAGGTCCAGAAGTGGAAATGGAGTCCT GGAGACCAGTGGAGAAGGTCCATAAGTGGAAATGGAGTCCT < 41bp 0.846088788823323 0.556328856029132 0.23874804 0.13691473 prediction 0.579519865588382 Functional Loss - CEP85 ENSG00000130695 CDS Human protein_coding chr1:26597549 chr1:26597551 stopgain 0.607 0 23 hm5C_associated_SNPs_56233 0 0 1 0 2 CEP85 chr1:26597598 5'GT 26597598 Upstream 48bp
chrX 102968568 102968568 1 - C A LUAD 102968571 - 102968551 102968591 41 TACGTGAAGGCAATCGACATCTGGATGGCTGTGTGTCTGCT TACGTGAAGGCAATCGACATCTGTATGGCTGTGTGTCTGCT < 41bp 0.878271143973295 0.588548857061567 0.40072268 0.09397814 prediction 0.579444573823458 Functional Loss - GLRA4;TMEM31 ENSG00000179363;ENSG00000188828 CDS Human other chrX:102968571 chrX:102968568 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_56240 0 0 0 0 1 GLRA4;TMEM31 chrX:102968597 3'AG 102968597 Downstream 30bp
chr10 121662335 121662335 1 + G T rs34157476 121662333 + 121662313 121662353 41 TCCTTCTTCAGTGCAGTCACCGGCACAGCAGCAGGTACCTG TCCTTCTTCAGTGCAGTCACCGTCACAGCAGCAGGTACCTG < 41bp 0.789707392555833 0.455993021286905 0.41958454 0.26165968 prediction 0.579414785111666 Functional Loss - SEC23IP ENSG00000107651 CDS Human protein_coding chr10:121662333 chr10:121662335 nonsynonymous SNV 0.014 0 23 hm5C_associated_SNPs_56241 0 0 1 0 1 SEC23IP chr10:121662311 3'AG 121662311 Downstream 25bp
chr17 46669721 46669721 1 + G T LUSC 46669719 + 46669699 46669739 41 CGATCTCGATGCGCCGTCGCCGGGTCAGGTAGCGGTTGAAG CGATCTCGATGCGCCGTCGCCGTGTCAGGTAGCGGTTGAAG < 41bp 0.789675982285839 0.459910300617106 0.8905853 0.5344785 prediction 0.579351964571678 Functional Loss - HOXB5 ENSG00000120075 CDS Human protein_coding chr17:46669719 chr17:46669721 synonymous SNV . 0 23 hm5C_associated_SNPs_56245 0 0 0 0 1 HOXB5 chr17:46669726 5'GT 46669726 Upstream 6bp
chr1 155533065 155533065 1 + G T UCEC 155533063 + 155533043 155533083 41 GCAGGACCGCTGCTGTGGAGCTGGTCGCAGGCGGTGTGTGC GCAGGACCGCTGCTGTGGAGCTTGTCGCAGGCGGTGTGTGC < 41bp 0.789655989618309 0.476775816764405 0.16522437 0.12761548 prediction 0.579311979236618 Functional Loss - ASH1L-AS1 ENSG00000235919 ncRNA_exonic Human antisense chr1:155533063 chr1:155533065 . . 0 23 hm5C_associated_SNPs_56247 0 0 1 0 1 ASH1L-AS1 chr1:155533041 3'AG 155533041 Downstream 25bp
chr11 124551353 124551353 1 + G C LUAD 124551352 + 124551332 124551372 41 TTCTATAACAATCATGCATTCGAGGTATGGTCCTTTGAAGC TTCTATAACAATCATGCATTCCAGGTATGGTCCTTTGAAGC < 41bp 0.793445053499664 0.503801058089187 0.89044344 0.34794608 prediction 0.579287990820953 Functional Loss - SPA17 ENSG00000064199 CDS Human protein_coding chr11:124551352 chr11:124551353 nonsynonymous SNV 0.911 0 22 hm5C_associated_SNPs_56249 0 0 0 0 2 SPA17 chr11:124551285 3'AG 124551285 Downstream 69bp
chr11 124551353 124551353 1 + G C LUAD 124551352 + 124551332 124551372 41 TTCTATAACAATCATGCATTCGAGGTATGGTCCTTTGAAGC TTCTATAACAATCATGCATTCCAGGTATGGTCCTTTGAAGC < 41bp 0.793445053499664 0.503801058089187 0.89044344 0.34794608 prediction 0.579287990820953 Functional Loss - SPA17 ENSG00000064199 CDS Human protein_coding chr11:124551352 chr11:124551353 nonsynonymous SNV 0.911 0 22 hm5C_associated_SNPs_56249 0 0 0 0 2 SPA17 chr11:124551355 5'GT 124551355 Upstream 3bp
chrX 11317052 11317052 1 + G T UCEC 11317049 + 11317029 11317069 41 CCATGCTTCCTGATCTGACTCTGGAAGCTTGGCCATCAACA CCATGCTTCCTGATCTGACTCTGTAAGCTTGGCCATCAACA < 41bp 0.889007124692861 0.599381624927835 0.21838233 0.058209956 prediction 0.579250999530052 Functional Loss - AMELX ENSG00000125363 CDS Human protein_coding chrX:11317049 chrX:11317052 stopgain 1.000 1 24 hm5C_associated_SNPs_56252 1 0 0 0 1 AMELX chrX:11317093 5'GT 11317093 Upstream 42bp
chr22 30077528 30077528 1 + G T BLCA 30077525 + 30077505 30077545 41 TGAAAGAGAGGGAGACAGCTCTGGATATTCTGCACAATGAG TGAAAGAGAGGGAGACAGCTCTGTATATTCTGCACAATGAG < 41bp 0.789617819697188 0.443442793163599 0.20421705 0.1012018 prediction 0.579235639394375 Functional Loss - NF2 ENSG00000186575 CDS Human protein_coding chr22:30077525 chr22:30077528 nonsynonymous SNV 0.915 3 24 hm5C_associated_SNPs_56254 0 0 1 0 1 NF2 chr22:30077590 5'GT 30077590 Upstream 63bp
chr16 47622868 47622868 1 + A T BLCA 47622864 + 47622844 47622884 41 TCAGTTATCCTGCATTTGCCCTGGATGATGAAGTTCTTTTT TCAGTTATCCTGCATTTGCCCTGGTTGATGAAGTTCTTTTT < 41bp 0.789615973971384 0.478775246805368 0.31017792 0.20586559 prediction 0.579231947942767 Functional Loss - PHKB ENSG00000102893 CDS Human protein_coding chr16:47622864 chr16:47622868 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_56255 0 0 1 0 1 PHKB chr16:47622816 3'AG 47622816 Downstream 53bp
chr16 89704477 89704477 1 + G T LUSC 89704475 + 89704455 89704495 41 CCCAGGCCAGCAACCTCACACAGGCTCCCGAGGAGGAGCCC CCCAGGCCAGCAACCTCACACATGCTCCCGAGGAGGAGCCC < 41bp 0.789613713867394 0.455014682232887 0.8677836 0.35109115 prediction 0.579227427734788 Functional Loss - DPEP1 ENSG00000015413 CDS Human protein_coding chr16:89704475 chr16:89704477 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_56256 0 0 1 0 1 DPEP1 chr16:89704460 3'AG 89704460 Downstream 18bp
chr19 46181246 46181246 1 + G C rs561341259 46181245 + 46181225 46181265 41 AAATGCGCTGCCGGGATTACCGGCTGAGGTGAGGGCATGCG AAATGCGCTGCCGGGATTACCCGCTGAGGTGAGGGCATGCG < 41bp 0.806453103354072 0.516849839159558 0.8906213 0.32256734 prediction 0.579206528389027 Functional Loss - GIPR ENSG00000010310 CDS Human protein_coding chr19:46181245 chr19:46181246 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_56257 0 0 1 0 2 GIPR chr19:46181164 3'AG 46181164 Downstream 83bp
chr19 46181246 46181246 1 + G C rs561341259 46181245 + 46181225 46181265 41 AAATGCGCTGCCGGGATTACCGGCTGAGGTGAGGGCATGCG AAATGCGCTGCCGGGATTACCCGCTGAGGTGAGGGCATGCG < 41bp 0.806453103354072 0.516849839159558 0.8906213 0.32256734 prediction 0.579206528389027 Functional Loss - GIPR ENSG00000010310 CDS Human protein_coding chr19:46181245 chr19:46181246 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_56257 0 0 1 0 2 GIPR chr19:46181252 5'GT 46181252 Upstream 7bp
chr10 25701255 25701255 1 + G T ACC 25701252 + 25701232 25701272 41 GCCTATGTCTGCCTACCTTGCAGGGAGGGCTGCCCCTTCTG GCCTATGTCTGCCTACCTTGCAGTGAGGGCTGCCCCTTCTG < 41bp 0.789603074902689 0.414147009754323 0.8951721 0.056925505 prediction 0.579206149805378 Functional Loss - GPR158 ENSG00000151025 CDS Human protein_coding chr10:25701252 chr10:25701255 nonsynonymous SNV 0.988 0 24 hm5C_associated_SNPs_56258 0 0 0 0 1 GPR158 chr10:25701179 3'AG 25701179 Downstream 77bp
chr4 59431 59431 1 + A T HNSC 59427 + 59407 59447 41 AGAGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCT AGAGATGTGATGTTGGAGAACTACTGGAACCTGGTCTCCCT < 41bp 0.789599109806028 0.475850662763347 0.87829185 0.08522165 prediction 0.579198219612056 Functional Loss - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:59427 chr4:59431 nonsynonymous SNV 0.628 3 25 hm5C_associated_SNPs_56259 0 0 1 0 1 ZNF595;ZNF718 chr4:59449 5'GT 59449 Upstream 19bp
chr22 32881139 32881139 1 + G C LIHC 32881138 + 32881118 32881158 41 CAGTACATGCATCCTCTCTGCGAGGGCAGCTCCGCTACTCT CAGTACATGCATCCTCTCTGCCAGGGCAGCTCCGCTACTCT < 41bp 0.78959905296834 0.497165724815606 0.90882385 0.8989569 prediction 0.57919810593668 Functional Loss - FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32881138 chr22:32881139 nonsynonymous SNV 0.969 2 22 hm5C_associated_SNPs_56260 0 0 1 0 2 FBXO7 chr22:32881055 3'AG 32881055 Downstream 85bp
chr22 32881139 32881139 1 + G C LIHC 32881138 + 32881118 32881158 41 CAGTACATGCATCCTCTCTGCGAGGGCAGCTCCGCTACTCT CAGTACATGCATCCTCTCTGCCAGGGCAGCTCCGCTACTCT < 41bp 0.78959905296834 0.497165724815606 0.90882385 0.8989569 prediction 0.57919810593668 Functional Loss - FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32881138 chr22:32881139 nonsynonymous SNV 0.969 2 22 hm5C_associated_SNPs_56260 0 0 1 0 2 FBXO7 chr22:32881196 5'GT 32881196 Upstream 58bp
chr14 89307236 89307236 1 + G T UCEC 89307233 + 89307213 89307253 41 TGGAACGTCTTTGAAACTCCCTGGAACTAATCAGACAGGAG TGGAACGTCTTTGAAACTCCCTGTAACTAATCAGACAGGAG < 41bp 0.789576069719957 0.421022802995482 0.3631245 0.19038683 prediction 0.579152139439914 Functional Loss - TTC8 ENSG00000165533 CDS Human protein_coding chr14:89307233 chr14:89307236 nonsynonymous SNV 0.954 3 24 hm5C_associated_SNPs_56262 0 0 0 0 3 TTC8 chr14:89307209 3'AG 89307209 Downstream 28bp
chr14 89307236 89307236 1 + G T UCEC 89307233 + 89307213 89307253 41 TGGAACGTCTTTGAAACTCCCTGGAACTAATCAGACAGGAG TGGAACGTCTTTGAAACTCCCTGTAACTAATCAGACAGGAG < 41bp 0.789576069719957 0.421022802995482 0.3631245 0.19038683 prediction 0.579152139439914 Functional Loss - TTC8 ENSG00000165533 CDS Human protein_coding chr14:89307233 chr14:89307236 nonsynonymous SNV 0.954 3 24 hm5C_associated_SNPs_56262 0 0 0 0 3 TTC8 chr14:89307267 5'GT 89307267 Upstream 32bp
chr14 89307236 89307236 1 + G T UCEC 89307233 + 89307213 89307253 41 TGGAACGTCTTTGAAACTCCCTGGAACTAATCAGACAGGAG TGGAACGTCTTTGAAACTCCCTGTAACTAATCAGACAGGAG < 41bp 0.789576069719957 0.421022802995482 0.3631245 0.19038683 prediction 0.579152139439914 Functional Loss - TTC8 ENSG00000165533 CDS Human protein_coding chr14:89307233 chr14:89307236 nonsynonymous SNV 0.954 3 24 hm5C_associated_SNPs_56262 0 0 0 0 3 TTC8 chr14:89307272 5'GT 89307272 Upstream 37bp
chr19 15791088 15791088 1 + G T LUSC 15791085 + 15791065 15791105 41 CCCAAGGATAATCTCTTCATCAGGTTCCTGAAGCCCTGGCT CCCAAGGATAATCTCTTCATCAGTTTCCTGAAGCCCTGGCT < 41bp 0.789566143898461 0.397687660172454 0.81474125 0.10851598 prediction 0.579132287796922 Functional Loss - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15791085 chr19:15791088 nonsynonymous SNV 0.117 0 24 hm5C_associated_SNPs_56264 0 0 1 0 2 CYP4F12 chr19:15791054 3'AG 15791054 Downstream 35bp
chr19 15791088 15791088 1 + G T LUSC 15791085 + 15791065 15791105 41 CCCAAGGATAATCTCTTCATCAGGTTCCTGAAGCCCTGGCT CCCAAGGATAATCTCTTCATCAGTTTCCTGAAGCCCTGGCT < 41bp 0.789566143898461 0.397687660172454 0.81474125 0.10851598 prediction 0.579132287796922 Functional Loss - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15791085 chr19:15791088 nonsynonymous SNV 0.117 0 24 hm5C_associated_SNPs_56264 0 0 1 0 2 CYP4F12 chr19:15791107 5'GT 15791107 Upstream 20bp
chr14 37145449 37145449 1 + G T SARC 37145447 + 37145427 37145467 41 GGCAGTTTTGTGTCAGCATCCAGCATGGCTCCTTACCCTAC GGCAGTTTTGTGTCAGCATCCATCATGGCTCCTTACCCTAC < 41bp 0.789549100740211 0.480304365549428 0.13130143 0.09905252 prediction 0.579098201480423 Functional Loss - PAX9 ENSG00000198807 CDS Human protein_coding chr14:37145447 chr14:37145449 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_56267 0 0 0 0 1 PAX9 chr14:37145403 3'AG 37145403 Downstream 47bp
chr17 58236675 58236675 1 + G T LUAD 58236672 + 58236652 58236692 41 ATGTCAGGCCCCTGCAGCAGCTGGGGCAGCGCACGGTGATA ATGTCAGGCCCCTGCAGCAGCTGTGGCAGCGCACGGTGATA < 41bp 0.901185138482124 0.611636495889808 0.82809305 0.28137577 prediction 0.579097285184633 Functional Loss - CA4 ENSG00000167434 CDS Human protein_coding chr17:58236672 chr17:58236675 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_56268 0 0 0 0 1 CA4 chr17:58236591 3'AG 58236591 Downstream 85bp
chr12 19283064 19283064 1 + G T COAD 19283062 + 19283042 19283082 41 CGGACACCGGCGGCAGAGCACAGGTAACGCCGGGCCCAAAC CGGACACCGGCGGCAGAGCACATGTAACGCCGGGCCCAAAC < 41bp 0.837214010075293 0.547668145150271 0.71632195 0.3833752 prediction 0.579091729850043 Functional Loss - PLEKHA5 ENSG00000052126 CDS Human protein_coding chr12:19283062 chr12:19283064 nonsynonymous SNV 0.975 3 23 hm5C_associated_SNPs_56269 0 0 1 0 2 PLEKHA5 chr12:19282985 3'AG 19282985 Downstream 80bp
chr12 19283064 19283064 1 + G T COAD 19283062 + 19283042 19283082 41 CGGACACCGGCGGCAGAGCACAGGTAACGCCGGGCCCAAAC CGGACACCGGCGGCAGAGCACATGTAACGCCGGGCCCAAAC < 41bp 0.837214010075293 0.547668145150271 0.71632195 0.3833752 prediction 0.579091729850043 Functional Loss - PLEKHA5 ENSG00000052126 CDS Human protein_coding chr12:19283062 chr12:19283064 nonsynonymous SNV 0.975 3 23 hm5C_associated_SNPs_56269 0 0 1 0 2 PLEKHA5 chr12:19283064 5'GT 19283064 Upstream 1bp
chr8 10557809 10557809 1 + A C LUSC 10557805 + 10557785 10557825 41 TGGAGCTCCTGCAGGAGCTGCTGCAGCGCCAGATCCAGAAC TGGAGCTCCTGCAGGAGCTGCTGCCGCGCCAGATCCAGAAC < 41bp 0.789538279704065 0.376769550218216 0.12450948 0.18898925 prediction 0.57907655940813 Functional Loss - C8orf74 ENSG00000171060 CDS Human protein_coding chr8:10557805 chr8:10557809 nonsynonymous SNV 0.083 2 25 hm5C_associated_SNPs_56272 0 0 0 0 1 C8orf74 chr8:10557745 3'AG 10557745 Downstream 65bp
chr3 137717885 137717885 1 + G T KIRC 137717883 + 137717863 137717903 41 CTCCTGTGTCCGAGAGAGCTCTGGCTTCACCGAGTGCCGGG CTCCTGTGTCCGAGAGAGCTCTTGCTTCACCGAGTGCCGGG < 41bp 0.846759784533956 0.557225870852648 0.25631112 0.0972569 prediction 0.579067827362614 Functional Loss - CLDN18 ENSG00000066405 CDS Human protein_coding chr3:137717883 chr3:137717885 nonsynonymous SNV 0.989 5 23 hm5C_associated_SNPs_56274 0 0 0 0 1 CLDN18 chr3:137717930 5'GT 137717930 Upstream 46bp
chr12 104458418 104458418 1 + G C LUAD 104458417 + 104458397 104458437 41 CCCGCGCCCGGCACGGACACCGAGCGGTGGCCATCCGGGAG CCCGCGCCCGGCACGGACACCCAGCGGTGGCCATCCGGGAG < 41bp 0.789530536482834 0.496093191487054 0.8195883 0.41957843 prediction 0.579061072965669 Functional Loss - HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104458417 chr12:104458418 nonsynonymous SNV 0.994 2 22 hm5C_associated_SNPs_56275 0 0 1 0 1 HCFC2 chr12:104458501 5'GT 104458501 Upstream 84bp
chr12 104458420 104458420 1 + G T UCEC 104458417 + 104458397 104458437 41 CCCGCGCCCGGCACGGACACCGAGCGGTGGCCATCCGGGAG CCCGCGCCCGGCACGGACACCGATCGGTGGCCATCCGGGAG < 41bp 0.789530536482834 0.421394153007605 0.8195883 0.14705327 prediction 0.579061072965669 Functional Loss - HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104458417 chr12:104458420 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_56276 0 0 1 0 1 HCFC2 chr12:104458501 5'GT 104458501 Upstream 82bp
chr12 16115830 16115830 1 + G T BRCA 16115828 + 16115808 16115848 41 GGCTGTGGAAGATGGAGCTACAGAAATCGACGTGGTAATTA GGCTGTGGAAGATGGAGCTACATAAATCGACGTGGTAATTA < 41bp 0.824774993496476 0.535247623735009 0.2234663 0.15928361 prediction 0.579054739522934 Functional Loss - DERA ENSG00000023697 CDS Human protein_coding chr12:16115828 chr12:16115830 stopgain 0.948 1 23 hm5C_associated_SNPs_56277 0 0 1 0 2 DERA chr12:16115747 3'AG 16115747 Downstream 84bp
chr12 16115830 16115830 1 + G T BRCA 16115828 + 16115808 16115848 41 GGCTGTGGAAGATGGAGCTACAGAAATCGACGTGGTAATTA GGCTGTGGAAGATGGAGCTACATAAATCGACGTGGTAATTA < 41bp 0.824774993496476 0.535247623735009 0.2234663 0.15928361 prediction 0.579054739522934 Functional Loss - DERA ENSG00000023697 CDS Human protein_coding chr12:16115828 chr12:16115830 stopgain 0.948 1 23 hm5C_associated_SNPs_56277 0 0 1 0 2 DERA chr12:16115881 5'GT 16115881 Upstream 52bp
chr19 17000477 17000477 1 + G C UCEC 17000476 + 17000456 17000496 41 TGGAGCTCCCGGACAGCTCACGGGCACTGCTTCTGGGCTGG TGGAGCTCCCGGACAGCTCACCGGCACTGCTTCTGGGCTGG < 41bp 0.804088660436501 0.514564024837556 0.8977549 0.7100097 prediction 0.579049271197889 Functional Loss - F2RL3 ENSG00000127533 CDS Human protein_coding chr19:17000476 chr19:17000477 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_56278 0 0 0 0 1 F2RL3 chr19:17000384 3'AG 17000384 Downstream 94bp
chr9 88631517 88631517 1 + A T CHOL 88631513 + 88631493 88631533 41 ATTGAGTCGTGCCGATGGCTCTCAAATGGCAGAGGAAAGGA ATTGAGTCGTGCCGATGGCTCTCATATGGCAGAGGAAAGGA < 41bp 0.789512282269359 0.449579538266513 0.3888911 0.04165426 prediction 0.579024564538718 Functional Loss - NAA35 ENSG00000135040 CDS Human protein_coding chr9:88631513 chr9:88631517 nonsynonymous SNV 0.991 2 25 hm5C_associated_SNPs_56281 0 0 1 0 2 NAA35 chr9:88631454 3'AG 88631454 Downstream 64bp
chr9 88631517 88631517 1 + A T CHOL 88631513 + 88631493 88631533 41 ATTGAGTCGTGCCGATGGCTCTCAAATGGCAGAGGAAAGGA ATTGAGTCGTGCCGATGGCTCTCATATGGCAGAGGAAAGGA < 41bp 0.789512282269359 0.449579538266513 0.3888911 0.04165426 prediction 0.579024564538718 Functional Loss - NAA35 ENSG00000135040 CDS Human protein_coding chr9:88631513 chr9:88631517 nonsynonymous SNV 0.991 2 25 hm5C_associated_SNPs_56281 0 0 1 0 2 NAA35 chr9:88631590 5'GT 88631590 Upstream 74bp
chr9 116130663 116130663 1 + G T LUSC 116130661 + 116130641 116130681 41 GGCGGTTCTTGGGTCTCTCTCAGGTTAGGAGCAGTAGAGCC GGCGGTTCTTGGGTCTCTCTCATGTTAGGAGCAGTAGAGCC < 41bp 0.789507664498216 0.458246765934794 0.9406461 0.9192721 prediction 0.579015328996432 Functional Loss - BSPRY ENSG00000119411 CDS Human protein_coding chr9:116130661 chr9:116130663 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_56283 0 0 0 0 1 BSPRY chr9:116130663 5'GT 116130663 Upstream 1bp
chr16 81965233 81965233 1 + G T GBM 81965230 + 81965210 81965250 41 TTGAGTGGTTTCAGAGCATCCGAGAGATCACCTGGAAGATT TTGAGTGGTTTCAGAGCATCCGATAGATCACCTGGAAGATT < 41bp 0.789505241510176 0.420046256887881 0.8846276 0.34621644 prediction 0.579010483020352 Functional Loss - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81965230 chr16:81965233 stopgain 0.999 1 24 hm5C_associated_SNPs_56284 0 0 0 0 1 PLCG2 chr16:81965259 5'GT 81965259 Upstream 27bp
chr8 87568409 87568409 1 + C T BLCA 87568407 + 87568387 87568427 41 AGACAAGCTATAGTTAATGCCTCCAGGCTGCCTATGTCCAT AGACAAGCTATAGTTAATGCCTTCAGGCTGCCTATGTCCAT < 41bp 0.789494644139957 0.497990651004343 0.952131 0.049488872 prediction 0.578989288279915 Functional Loss - CPNE3 ENSG00000085719 CDS Human protein_coding chr8:87568407 chr8:87568409 nonsynonymous SNV 0.989 3 23 hm5C_associated_SNPs_56286 0 0 1 0 1 CPNE3 chr8:87568330 3'AG 87568330 Downstream 80bp
chr11 119025058 119025058 1 + G T LUAD 119025055 + 119025035 119025075 41 AGATGTCCTGCTACATCATGCAAGATGACATGCTGCTGCCG AGATGTCCTGCTACATCATGCAATATGACATGCTGCTGCCG < 41bp 0.789490942038393 0.399740997624027 0.36261153 0.055211723 prediction 0.578981884076786 Functional Loss - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119025055 chr11:119025058 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_56287 0 0 0 0 2 ABCG4 chr11:119024970 3'AG 119024970 Downstream 89bp
chr11 119025058 119025058 1 + G T LUAD 119025055 + 119025035 119025075 41 AGATGTCCTGCTACATCATGCAAGATGACATGCTGCTGCCG AGATGTCCTGCTACATCATGCAATATGACATGCTGCTGCCG < 41bp 0.789490942038393 0.399740997624027 0.36261153 0.055211723 prediction 0.578981884076786 Functional Loss - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119025055 chr11:119025058 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_56287 0 0 0 0 2 ABCG4 chr11:119025102 5'GT 119025102 Upstream 45bp
chr3 5212250 5212250 1 + A T BLCA 5212246 + 5212226 5212266 41 CTTCAACATGAGGAAGGTAACTAAAGGTAACGTCACAATAA CTTCAACATGAGGAAGGTAACTAATGGTAACGTCACAATAA < 41bp 0.826129177839944 0.53665320875191 0.7500273 0.14075989 prediction 0.578951938176068 Functional Loss - ARL8B ENSG00000134108 CDS Human protein_coding chr3:5212246 chr3:5212250 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_56288 0 0 1 0 2 ARL8B chr3:5212188 3'AG 5212188 Downstream 63bp
chr3 5212250 5212250 1 + A T BLCA 5212246 + 5212226 5212266 41 CTTCAACATGAGGAAGGTAACTAAAGGTAACGTCACAATAA CTTCAACATGAGGAAGGTAACTAATGGTAACGTCACAATAA < 41bp 0.826129177839944 0.53665320875191 0.7500273 0.14075989 prediction 0.578951938176068 Functional Loss - ARL8B ENSG00000134108 CDS Human protein_coding chr3:5212246 chr3:5212250 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_56288 0 0 1 0 2 ARL8B chr3:5212268 5'GT 5212268 Upstream 19bp
chr19 47777723 47777723 1 + G T rs115292041 47777721 + 47777701 47777741 41 GAGCCAGAGGCCGTAGCGGGCAGGGCTCGAGCACTGGAGTA GAGCCAGAGGCCGTAGCGGGCATGGCTCGAGCACTGGAGTA < 41bp 0.80974807383145 0.520302606169258 0.8869387 0.4215724 prediction 0.578890935324385 Functional Loss - INAFM1 ENSG00000257704 upstream Human protein_coding chr19:47777721 chr19:47777723 . . 0 23 hm5C_associated_SNPs_56290 0 0 0 0 1 INAFM1 chr19:47777755 5'GT 47777755 Upstream 33bp
chr19 18684488 18684488 1 + G T SARC 18684486 + 18684466 18684506 41 CCTCAGGTATCCCACCTGACCAGCAGCGTCTGATATTTGCC CCTCAGGTATCCCACCTGACCATCAGCGTCTGATATTTGCC < 41bp 0.844607550494655 0.555167542776216 0.15894029 0.11374304 prediction 0.578880015436879 Functional Loss - UBA52 ENSG00000221983 CDS Human protein_coding chr19:18684486 chr19:18684488 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_56291 0 0 1 0 2 UBA52 chr19:18684472 3'AG 18684472 Downstream 17bp
chr19 18684488 18684488 1 + G T SARC 18684486 + 18684466 18684506 41 CCTCAGGTATCCCACCTGACCAGCAGCGTCTGATATTTGCC CCTCAGGTATCCCACCTGACCATCAGCGTCTGATATTTGCC < 41bp 0.844607550494655 0.555167542776216 0.15894029 0.11374304 prediction 0.578880015436879 Functional Loss - UBA52 ENSG00000221983 CDS Human protein_coding chr19:18684486 chr19:18684488 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_56291 0 0 1 0 2 UBA52 chr19:18684558 5'GT 18684558 Upstream 71bp
chr12 107141268 107141268 1 + G T BRCA 107141266 + 107141246 107141286 41 ATACACAGTGACGACGGCTGCTGGGTCCCCAGCTGAGAACT ATACACAGTGACGACGGCTGCTTGGTCCCCAGCTGAGAACT < 41bp 0.789433493089074 0.444330105568423 0.7992419 0.048669785 prediction 0.578866986178148 Functional Loss - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107141266 chr12:107141268 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_56292 0 0 0 0 1 RFX4 chr12:107141215 3'AG 107141215 Downstream 54bp
chr12 107141269 107141269 1 + G T UCEC 107141266 + 107141246 107141286 41 ATACACAGTGACGACGGCTGCTGGGTCCCCAGCTGAGAACT ATACACAGTGACGACGGCTGCTGTGTCCCCAGCTGAGAACT < 41bp 0.789433493089074 0.402680679035568 0.7992419 0.06199372 prediction 0.578866986178148 Functional Loss - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107141266 chr12:107141269 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_56293 0 0 0 0 1 RFX4 chr12:107141215 3'AG 107141215 Downstream 55bp
chr22 50927578 50927578 1 + G T UCEC 50927576 + 50927556 50927596 41 GACCTCCAGGATCCTCGATACAGGTGCTCCCTGCTGCTGAG GACCTCCAGGATCCTCGATACATGTGCTCCCTGCTGCTGAG < 41bp 0.789403372901607 0.444032319830455 0.27930748 0.025135845 prediction 0.578806745803214 Functional Loss - MIOX ENSG00000100253 CDS Human protein_coding chr22:50927576 chr22:50927578 nonsynonymous SNV 0.968 3 23 hm5C_associated_SNPs_56295 0 0 1 0 1 MIOX chr22:50927578 5'GT 50927578 Upstream 1bp
chr5 72874615 72874615 1 + G T UCEC 72874612 + 72874592 72874632 41 ACAGGCCAGCAAAGAAGCACCTAGAATTGTATGACAGGGAT ACAGGCCAGCAAAGAAGCACCTATAATTGTATGACAGGGAT < 41bp 0.789388477082699 0.431592011315377 0.2661019 0.29015028 prediction 0.578776954165398 Functional Loss - UTP15 ENSG00000164338 CDS Human protein_coding chr5:72874612 chr5:72874615 stopgain 0.533 0 24 hm5C_associated_SNPs_56296 0 0 1 0 2 UTP15 chr5:72874576 3'AG 72874576 Downstream 40bp
chr5 72874615 72874615 1 + G T UCEC 72874612 + 72874592 72874632 41 ACAGGCCAGCAAAGAAGCACCTAGAATTGTATGACAGGGAT ACAGGCCAGCAAAGAAGCACCTATAATTGTATGACAGGGAT < 41bp 0.789388477082699 0.431592011315377 0.2661019 0.29015028 prediction 0.578776954165398 Functional Loss - UTP15 ENSG00000164338 CDS Human protein_coding chr5:72874612 chr5:72874615 stopgain 0.533 0 24 hm5C_associated_SNPs_56296 0 0 1 0 2 UTP15 chr5:72874677 5'GT 72874677 Upstream 63bp
chr3 42732408 42732408 1 + G T UCEC 42732406 + 42732386 42732426 41 GCTCACTCAGCCTGGTCAGCCTGGTGGGTACCCTCTATGCC GCTCACTCAGCCTGGTCAGCCTTGTGGGTACCCTCTATGCC < 41bp 0.78938434537701 0.453772634396874 0.37462026 0.16119066 prediction 0.57876869075402 Functional Loss - KLHL40 ENSG00000157119 CDS Human protein_coding chr3:42732406 chr3:42732408 synonymous SNV . 0 23 hm5C_associated_SNPs_56299 0 0 0 0 2 KLHL40 chr3:42732351 3'AG 42732351 Downstream 58bp
chr3 42732408 42732408 1 + G T UCEC 42732406 + 42732386 42732426 41 GCTCACTCAGCCTGGTCAGCCTGGTGGGTACCCTCTATGCC GCTCACTCAGCCTGGTCAGCCTTGTGGGTACCCTCTATGCC < 41bp 0.78938434537701 0.453772634396874 0.37462026 0.16119066 prediction 0.57876869075402 Functional Loss - KLHL40 ENSG00000157119 CDS Human protein_coding chr3:42732406 chr3:42732408 synonymous SNV . 0 23 hm5C_associated_SNPs_56299 0 0 0 0 2 KLHL40 chr3:42732497 5'GT 42732497 Upstream 90bp
chr2 114195568 114195568 1 + G T UCEC 114195565 + 114195545 114195585 41 GAAAAGTCTGGCCTCGGCGCCAAGATCCCAGTCACAATTAT GAAAAGTCTGGCCTCGGCGCCAATATCCCAGTCACAATTAT < 41bp 0.789378629568235 0.430655818912013 0.27101564 0.046290338 prediction 0.57875725913647 Functional Loss - CBWD2 ENSG00000136682 CDS Human protein_coding chr2:114195565 chr2:114195568 nonsynonymous SNV 0.874 2 24 hm5C_associated_SNPs_56300 0 0 0 2 1 CBWD2 chr2:114195599 5'GT 114195599 Upstream 32bp
chr19 1218445 1218445 1 + A T HNSC 1218441 + 1218421 1218461 41 TTCAACTACTGAGGAGGTTACGGCACAAAAATGTCATCCAG TTCAACTACTGAGGAGGTTACGGCTCAAAAATGTCATCCAG < 41bp 0.789374934814426 0.481485541465661 0.3423972 0.13699248 prediction 0.578749869628852 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1218441 chr19:1218445 nonsynonymous SNV 0.084 4 25 hm5C_associated_SNPs_56301 0 0 1 0 1 STK11 chr19:1218416 3'AG 1218416 Downstream 30bp
chr19 48917278 48917278 1 + G T UCEC 48917276 + 48917256 48917296 41 TGAACATCACGTGGGATAACCGGGATTACTCCTTCAATGAG TGAACATCACGTGGGATAACCGTGATTACTCCTTCAATGAG < 41bp 0.789374553249133 0.465522120734125 0.929852 0.4094539 prediction 0.578749106498267 Functional Loss - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48917276 chr19:48917278 synonymous SNV . 0 23 hm5C_associated_SNPs_56302 0 0 1 0 2 GRIN2D chr19:48917248 3'AG 48917248 Downstream 31bp
chr19 48917278 48917278 1 + G T UCEC 48917276 + 48917256 48917296 41 TGAACATCACGTGGGATAACCGGGATTACTCCTTCAATGAG TGAACATCACGTGGGATAACCGTGATTACTCCTTCAATGAG < 41bp 0.789374553249133 0.465522120734125 0.929852 0.4094539 prediction 0.578749106498267 Functional Loss - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48917276 chr19:48917278 synonymous SNV . 0 23 hm5C_associated_SNPs_56302 0 0 1 0 2 GRIN2D chr19:48917362 5'GT 48917362 Upstream 85bp
chr4 88957381 88957381 1 + G T LUAD 88957379 + 88957359 88957399 41 TTCTGTGTTCCAGTGACCTACGGCATGATGAGCTCCAATGT TTCTGTGTTCCAGTGACCTACGTCATGATGAGCTCCAATGT < 41bp 0.789341289876202 0.467926601622279 0.1075151 0.021509558 prediction 0.578682579752405 Functional Loss - PKD2 ENSG00000118762 CDS Human protein_coding chr4:88957379 chr4:88957381 nonsynonymous SNV 0.986 2 23 hm5C_associated_SNPs_56304 0 0 0 0 1 PKD2 chr4:88957372 3'AG 88957372 Downstream 10bp
chr18 39542501 39542501 1 + G T UCEC 39542499 + 39542479 39542519 41 GTAAAATACCCTGACCTGCCCAGGAATGCCCAAGTGGCCCT GTAAAATACCCTGACCTGCCCATGAATGCCCAAGTGGCCCT < 41bp 0.834350943489713 0.545056118935425 0.73576474 0.053035647 prediction 0.578589649108575 Functional Loss - PIK3C3 ENSG00000078142 CDS Human protein_coding chr18:39542499 chr18:39542501 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_56308 0 0 1 0 2 PIK3C3 chr18:39542454 3'AG 39542454 Downstream 48bp
chr18 39542501 39542501 1 + G T UCEC 39542499 + 39542479 39542519 41 GTAAAATACCCTGACCTGCCCAGGAATGCCCAAGTGGCCCT GTAAAATACCCTGACCTGCCCATGAATGCCCAAGTGGCCCT < 41bp 0.834350943489713 0.545056118935425 0.73576474 0.053035647 prediction 0.578589649108575 Functional Loss - PIK3C3 ENSG00000078142 CDS Human protein_coding chr18:39542499 chr18:39542501 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_56308 0 0 1 0 2 PIK3C3 chr18:39542597 5'GT 39542597 Upstream 97bp
chr3 38048186 38048186 1 + A C STAD 38048182 + 38048162 38048202 41 CCAGAGGGCGTGGACCCTGCCCGCAGGGAGGTGGGCACCCC CCAGAGGGCGTGGACCCTGCCCGCCGGGAGGTGGGCACCCC < 41bp 0.78929007949227 0.385477311816274 0.15346107 0.10552156 prediction 0.57858015898454 Functional Loss - VILL ENSG00000136059 CDS Human protein_coding chr3:38048182 chr3:38048186 synonymous SNV . 0 25 hm5C_associated_SNPs_56309 0 0 1 0 1 VILL chr3:38048191 5'GT 38048191 Upstream 6bp
chr11 64799920 64799920 1 + G T OV 64799918 + 64799898 64799938 41 CATAGGTGGTGGTCTGGAAGCGGTACAGCGACTTCCGCAAG CATAGGTGGTGGTCTGGAAGCGTTACAGCGACTTCCGCAAG < 41bp 0.854157391519591 0.564885889063847 0.2143664 0.15173161 prediction 0.578543004911488 Functional Loss - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64799918 chr11:64799920 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_56311 0 0 1 0 1 SNX15 chr11:64799903 3'AG 64799903 Downstream 18bp
chr6 170159111 170159111 1 + G T SARC 170159109 + 170159089 170159129 41 GCTCTCCGTGTGGTCTCAACCTGCGTAACGTCTTATGGCAT GCTCTCCGTGTGGTCTCAACCTTCGTAACGTCTTATGGCAT < 41bp 0.789269815410609 0.476924876943525 0.32771033 0.1057238 prediction 0.578539630821217 Functional Loss - ERMARD ENSG00000130023 CDS Human protein_coding chr6:170159109 chr6:170159111 synonymous SNV . 0 23 hm5C_associated_SNPs_56312 0 0 1 0 2 ERMARD chr6:170159064 3'AG 170159064 Downstream 48bp
chr6 170159111 170159111 1 + G T SARC 170159109 + 170159089 170159129 41 GCTCTCCGTGTGGTCTCAACCTGCGTAACGTCTTATGGCAT GCTCTCCGTGTGGTCTCAACCTTCGTAACGTCTTATGGCAT < 41bp 0.789269815410609 0.476924876943525 0.32771033 0.1057238 prediction 0.578539630821217 Functional Loss - ERMARD ENSG00000130023 CDS Human protein_coding chr6:170159109 chr6:170159111 synonymous SNV . 0 23 hm5C_associated_SNPs_56312 0 0 1 0 2 ERMARD chr6:170159161 5'GT 170159161 Upstream 51bp
chr16 68248323 68248323 1 + G T BLCA 68248320 + 68248300 68248340 41 CTCTCATGTCCAGCTCCTTTCTGGAGAATCTAGAGGGTGAG CTCTCATGTCCAGCTCCTTTCTGTAGAATCTAGAGGGTGAG < 41bp 0.801805194692442 0.512536751839491 0.2908879 0.13241574 prediction 0.578536885705901 Functional Loss - NFATC3 ENSG00000072736 CDS Human protein_coding chr16:68248320 chr16:68248323 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_56314 0 0 0 0 1 NFATC3 chr16:68248232 3'AG 68248232 Downstream 92bp
chr4 129778551 129778551 1 + G T UCEC 129778549 + 129778529 129778569 41 ACCAAGGTGTCACACATTCCCAGCAGCCGGTGGGCGCTAGT ACCAAGGTGTCACACATTCCCATCAGCCGGTGGGCGCTAGT < 41bp 0.847223061187501 0.557957141317692 0.16303566 0.0335446 prediction 0.578531839739617 Functional Loss - JADE1 ENSG00000077684 CDS Human protein_coding chr4:129778549 chr4:129778551 nonsynonymous SNV 0.981 4 23 hm5C_associated_SNPs_56315 0 0 1 0 2 JADE1 chr4:129778493 3'AG 129778493 Downstream 59bp
chr4 129778551 129778551 1 + G T UCEC 129778549 + 129778529 129778569 41 ACCAAGGTGTCACACATTCCCAGCAGCCGGTGGGCGCTAGT ACCAAGGTGTCACACATTCCCATCAGCCGGTGGGCGCTAGT < 41bp 0.847223061187501 0.557957141317692 0.16303566 0.0335446 prediction 0.578531839739617 Functional Loss - JADE1 ENSG00000077684 CDS Human protein_coding chr4:129778549 chr4:129778551 nonsynonymous SNV 0.981 4 23 hm5C_associated_SNPs_56315 0 0 1 0 2 JADE1 chr4:129778609 5'GT 129778609 Upstream 59bp
chr3 113514020 113514020 1 + G T LUSC 113514018 + 113513998 113514038 41 GGTGAAATGTCTTGGAAATCCTGAAAGAGAAGGGAGTGTCA GGTGAAATGTCTTGGAAATCCTTAAAGAGAAGGGAGTGTCA < 41bp 0.824222460825748 0.534963042878348 0.13812363 0.16413695 prediction 0.5785188358948 Functional Loss - ATP6V1A ENSG00000114573 CDS Human protein_coding chr3:113514018 chr3:113514020 stopgain 1.000 1 23 hm5C_associated_SNPs_56316 0 0 1 0 1 ATP6V1A chr3:113513937 3'AG 113513937 Downstream 84bp
chr1 41223931 41223931 1 + G T OV 41223929 + 41223909 41223949 41 CTCCACGACCACCATCCAGCCTGGGCAGATCATCATCGCAC CTCCACGACCACCATCCAGCCTTGGCAGATCATCATCGCAC < 41bp 0.841700307444341 0.552452740657702 0.13919285 0.03016749 prediction 0.578495133573278 Functional Loss - NFYC ENSG00000066136 CDS Human protein_coding chr1:41223929 chr1:41223931 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_56317 0 0 1 0 1 NFYC chr1:41223966 5'GT 41223966 Upstream 36bp
chr2 135199405 135199405 1 + G T STAD 135199403 + 135199383 135199423 41 CTTGCTGAGCCCGGGCAGTCCTGCAAGCAGGTGTGCCAGGA CTTGCTGAGCCCGGGCAGTCCTTCAAGCAGGTGTGCCAGGA < 41bp 0.78921848587541 0.476178747950333 0.723219 0.55695814 prediction 0.57843697175082 Functional Loss - MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135199403 chr2:135199405 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_56323 0 0 1 0 2 MGAT5 chr2:135199329 3'AG 135199329 Downstream 77bp
chr2 135199405 135199405 1 + G T STAD 135199403 + 135199383 135199423 41 CTTGCTGAGCCCGGGCAGTCCTGCAAGCAGGTGTGCCAGGA CTTGCTGAGCCCGGGCAGTCCTTCAAGCAGGTGTGCCAGGA < 41bp 0.78921848587541 0.476178747950333 0.723219 0.55695814 prediction 0.57843697175082 Functional Loss - MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135199403 chr2:135199405 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_56323 0 0 1 0 2 MGAT5 chr2:135199486 5'GT 135199486 Upstream 82bp
chr2 101591311 101591311 1 + A T LUAD 101591307 + 101591287 101591327 41 CTCGGCAGCACTTTAACACACTCGACGTGGGTGCCTCGGGC CTCGGCAGCACTTTAACACACTCGTCGTGGGTGCCTCGGGC < 41bp 0.851967942844718 0.562764430947379 0.52710485 0.23765558 prediction 0.578407023794679 Functional Loss - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101591307 chr2:101591311 nonsynonymous SNV 0.287 1 25 hm5C_associated_SNPs_56324 0 0 1 0 1 NPAS2 chr2:101591406 5'GT 101591406 Upstream 96bp
chrX 55744813 55744813 1 + G T UCEC 55744810 + 55744790 55744830 41 GGAGAAAGAAAATCTGGGGCCGAGAATGGATCCACCACTAG GGAGAAAGAAAATCTGGGGCCGATAATGGATCCACCACTAG < 41bp 0.88227786142064 0.593081233620429 0.30067736 0.14657459 prediction 0.578393255600422 Functional Loss - RRAGB ENSG00000083750 CDS Human protein_coding chrX:55744810 chrX:55744813 nonsynonymous SNV 0.963 3 24 hm5C_associated_SNPs_56326 0 0 1 0 1 RRAGB chrX:55744852 5'GT 55744852 Upstream 40bp
chr3 122869173 122869173 1 + A C UCEC 122869169 + 122869149 122869189 41 GGGACAACTTCCGGGAGACCCTGAAGAAGAAGAAACACACC GGGACAACTTCCGGGAGACCCTGACGAAGAAGAAACACACC < 41bp 0.789188554645201 0.370858225084325 0.15389249 0.057519525 prediction 0.578377109290402 Functional Loss - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122869169 chr3:122869173 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_56329 0 0 1 0 2 PDIA5 chr3:122869081 3'AG 122869081 Downstream 93bp
chr3 122869173 122869173 1 + A C UCEC 122869169 + 122869149 122869189 41 GGGACAACTTCCGGGAGACCCTGAAGAAGAAGAAACACACC GGGACAACTTCCGGGAGACCCTGACGAAGAAGAAACACACC < 41bp 0.789188554645201 0.370858225084325 0.15389249 0.057519525 prediction 0.578377109290402 Functional Loss - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122869169 chr3:122869173 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_56329 0 0 1 0 2 PDIA5 chr3:122869211 5'GT 122869211 Upstream 39bp
chr20 17434472 17434472 1 + C T SKCM 17434470 + 17434450 17434490 41 TGCAACTGCGACGGCTACGCCTCCAGCATGTGGACCATCTC TGCAACTGCGACGGCTACGCCTTCAGCATGTGGACCATCTC < 41bp 0.792351886239979 0.503164706855547 0.9604213 0.08828747 prediction 0.578374358768864 Functional Loss - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17434470 chr20:17434472 nonsynonymous SNV 0.975 5 23 hm5C_associated_SNPs_56330 0 0 0 0 1 PCSK2 chr20:17434387 3'AG 17434387 Downstream 86bp
chr7 99964979 99964979 1 + G T LUSC 99964976 + 99964956 99964996 41 ACTTCCCCTCCTGCAGGTAGCAGGGCGCCAAGCAGTGACTT ACTTCCCCTCCTGCAGGTAGCAGTGCGCCAAGCAGTGACTT < 41bp 0.789171310299335 0.413286236649261 0.92695934 0.1581726 prediction 0.578342620598669 Functional Loss - PILRB ENSG00000121716 CDS Human protein_coding chr7:99964976 chr7:99964979 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_56331 0 0 1 0 1 PILRB chr7:99964972 3'AG 99964972 Downstream 8bp
chr4 100784198 100784198 1 + G T COAD 100784196 + 100784176 100784216 41 ACAAGATGGTTTACTCTGCACAGGAATGAACTGAAATACTT ACAAGATGGTTTACTCTGCACATGAATGAACTGAAATACTT < 41bp 0.811343319954633 0.522174335386892 0.16775575 0.08425966 prediction 0.578337969135482 Functional Loss - DAPP1 ENSG00000070190 CDS Human protein_coding chr4:100784196 chr4:100784198 nonsynonymous SNV 0.990 4 23 hm5C_associated_SNPs_56333 0 0 0 0 2 DAPP1 chr4:100784167 3'AG 100784167 Downstream 32bp
chr4 100784198 100784198 1 + G T COAD 100784196 + 100784176 100784216 41 ACAAGATGGTTTACTCTGCACAGGAATGAACTGAAATACTT ACAAGATGGTTTACTCTGCACATGAATGAACTGAAATACTT < 41bp 0.811343319954633 0.522174335386892 0.16775575 0.08425966 prediction 0.578337969135482 Functional Loss - DAPP1 ENSG00000070190 CDS Human protein_coding chr4:100784196 chr4:100784198 nonsynonymous SNV 0.990 4 23 hm5C_associated_SNPs_56333 0 0 0 0 2 DAPP1 chr4:100784229 5'GT 100784229 Upstream 32bp
chr17 12016610 12016610 1 + G T OV 12016608 + 12016588 12016628 41 AATATTAAGCTCTGTGACTTCGGCATCAGTGGACAGCTTGT AATATTAAGCTCTGTGACTTCGTCATCAGTGGACAGCTTGT < 41bp 0.789150671518016 0.477946084556529 0.83092076 0.19433868 prediction 0.578301343036032 Functional Loss - MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12016608 chr17:12016610 nonsynonymous SNV 0.980 5 23 hm5C_associated_SNPs_56335 0 0 1 0 2 MAP2K4 chr17:12016550 3'AG 12016550 Downstream 61bp
chr17 12016610 12016610 1 + G T OV 12016608 + 12016588 12016628 41 AATATTAAGCTCTGTGACTTCGGCATCAGTGGACAGCTTGT AATATTAAGCTCTGTGACTTCGTCATCAGTGGACAGCTTGT < 41bp 0.789150671518016 0.477946084556529 0.83092076 0.19433868 prediction 0.578301343036032 Functional Loss - MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12016608 chr17:12016610 nonsynonymous SNV 0.980 5 23 hm5C_associated_SNPs_56335 0 0 1 0 2 MAP2K4 chr17:12016677 5'GT 12016677 Upstream 68bp
chr3 44943308 44943308 1 + G T UCEC 44943306 + 44943286 44943326 41 GCTGAGAGCGTTGGGCATCCCAGCACGCAGTGTGACAGGCT GCTGAGAGCGTTGGGCATCCCATCACGCAGTGTGACAGGCT < 41bp 0.833796446145402 0.544658007804741 0.2935875 0.14301613 prediction 0.578276876681321 Functional Loss - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44943306 chr3:44943308 nonsynonymous SNV 0.014 0 23 hm5C_associated_SNPs_56336 0 0 0 0 1 TGM4 chr3:44943285 3'AG 44943285 Downstream 24bp
chr2 220072422 220072422 1 + G T CESC 220072420 + 220072400 220072440 41 AATGTGCCTGTGCCTGTGGCCAGAGGGGAGCCCCCTGACCG AATGTGCCTGTGCCTGTGGCCATAGGGGAGCCCCCTGACCG < 41bp 0.843697132523993 0.554564299858075 0.9222501 0.9041042 prediction 0.578265665331836 Functional Loss - ZFAND2B ENSG00000158552 CDS Human protein_coding chr2:220072420 chr2:220072422 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_56337 0 0 1 0 2 ZFAND2B chr2:220072370 3'AG 220072370 Downstream 53bp
chr2 220072422 220072422 1 + G T CESC 220072420 + 220072400 220072440 41 AATGTGCCTGTGCCTGTGGCCAGAGGGGAGCCCCCTGACCG AATGTGCCTGTGCCTGTGGCCATAGGGGAGCCCCCTGACCG < 41bp 0.843697132523993 0.554564299858075 0.9222501 0.9041042 prediction 0.578265665331836 Functional Loss - ZFAND2B ENSG00000158552 CDS Human protein_coding chr2:220072420 chr2:220072422 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_56337 0 0 1 0 2 ZFAND2B chr2:220072501 5'GT 220072501 Upstream 80bp
chr2 109116074 109116074 1 + G T COAD 109116072 + 109116052 109116092 41 GAGAGAAGTCTGCAGCTAACCTGGAATACTTGAAGAACGTC GAGAGAAGTCTGCAGCTAACCTTGAATACTTGAAGAACGTC < 41bp 0.789130488308912 0.490455157364563 0.25824273 0.051731378 prediction 0.578260976617824 Functional Loss - GCC2 ENSG00000135968 CDS Human protein_coding chr2:109116072 chr2:109116074 synonymous SNV . 0 23 hm5C_associated_SNPs_56340 0 0 0 0 1 GCC2 chr2:109116009 3'AG 109116009 Downstream 66bp
chr1 24669254 24669254 1 + G T UCEC 24669252 + 24669232 24669272 41 AAGGTCAAGTGCCCTGACTCCAGCAACAGTGGTCAGTGGGG AAGGTCAAGTGCCCTGACTCCATCAACAGTGGTCAGTGGGG < 41bp 0.789122507336863 0.459184926238747 0.30957288 0.043535322 prediction 0.578245014673726 Functional Loss - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24669252 chr1:24669254 nonsynonymous SNV 0.907 2 23 hm5C_associated_SNPs_56341 0 0 0 0 2 GRHL3 chr1:24669184 3'AG 24669184 Downstream 71bp
chr1 24669254 24669254 1 + G T UCEC 24669252 + 24669232 24669272 41 AAGGTCAAGTGCCCTGACTCCAGCAACAGTGGTCAGTGGGG AAGGTCAAGTGCCCTGACTCCATCAACAGTGGTCAGTGGGG < 41bp 0.789122507336863 0.459184926238747 0.30957288 0.043535322 prediction 0.578245014673726 Functional Loss - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24669252 chr1:24669254 nonsynonymous SNV 0.907 2 23 hm5C_associated_SNPs_56341 0 0 0 0 2 GRHL3 chr1:24669262 5'GT 24669262 Upstream 9bp
chr20 18454060 18454060 1 + G T UCEC 18454057 + 18454037 18454077 41 AAATGAAGGGATCCGATAACCAAGAAAAACTAGTATATCAA AAATGAAGGGATCCGATAACCAATAAAAACTAGTATATCAA < 41bp 0.789115743612274 0.435787160823916 0.8845084 0.35944182 prediction 0.578231487224548 Functional Loss - POLR3F ENSG00000132664 CDS Human protein_coding chr20:18454057 chr20:18454060 stopgain 1.000 1 24 hm5C_associated_SNPs_56342 0 0 1 0 2 POLR3F chr20:18454035 3'AG 18454035 Downstream 26bp
chr20 18454060 18454060 1 + G T UCEC 18454057 + 18454037 18454077 41 AAATGAAGGGATCCGATAACCAAGAAAAACTAGTATATCAA AAATGAAGGGATCCGATAACCAATAAAAACTAGTATATCAA < 41bp 0.789115743612274 0.435787160823916 0.8845084 0.35944182 prediction 0.578231487224548 Functional Loss - POLR3F ENSG00000132664 CDS Human protein_coding chr20:18454057 chr20:18454060 stopgain 1.000 1 24 hm5C_associated_SNPs_56342 0 0 1 0 2 POLR3F chr20:18454102 5'GT 18454102 Upstream 43bp
chr19 13059026 13059026 1 + G C SKCM 13059022 + 13059002 13059042 41 CCAGGGTACCTCAGCACCCCCAGAGGCCTCACCCACAGCTG CCAGGGTACCTCAGCACCCCCAGACGCCTCACCCACAGCTG < 41bp 0.79669165457654 0.50757970511633 0.9219737 0.85704654 prediction 0.578223898920418 Functional Loss - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13059022 chr19:13059026 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_56343 0 0 1 0 1 RAD23A chr19:13058991 3'AG 13058991 Downstream 36bp
chr3 169646300 169646300 1 + G T UCEC 169646298 + 169646278 169646318 41 TTTCTTTGGATGAAGATATTCAGAAGTGGACCGTGGATGAT TTTCTTTGGATGAAGATATTCATAAGTGGACCGTGGATGAT < 41bp 0.848040635889497 0.558936055656995 0.8808982 0.38675463 prediction 0.578209160465004 Functional Loss - SAMD7 ENSG00000187033 CDS Human protein_coding chr3:169646298 chr3:169646300 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_56344 0 0 0 0 2 SAMD7 chr3:169646245 3'AG 169646245 Downstream 56bp
chr3 169646300 169646300 1 + G T UCEC 169646298 + 169646278 169646318 41 TTTCTTTGGATGAAGATATTCAGAAGTGGACCGTGGATGAT TTTCTTTGGATGAAGATATTCATAAGTGGACCGTGGATGAT < 41bp 0.848040635889497 0.558936055656995 0.8808982 0.38675463 prediction 0.578209160465004 Functional Loss - SAMD7 ENSG00000187033 CDS Human protein_coding chr3:169646298 chr3:169646300 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_56344 0 0 0 0 2 SAMD7 chr3:169646366 5'GT 169646366 Upstream 67bp
chr17 21826180 21826180 1 + G T LUAD 21826177 + 21826157 21826197 41 GAGAGGAGCAGGCCCACGTCCAAGAAGATGGCTGTATGTTT GAGAGGAGCAGGCCCACGTCCAATAAGATGGCTGTATGTTT < 41bp 0.857498259373741 0.56844485442458 0.21823171 0.034339637 prediction 0.578106809898322 Functional Loss - FAM27E5 ENSG00000178130 ncRNA_exonic Human lincRNA chr17:21826177 chr17:21826180 . . 0 24 hm5C_associated_SNPs_56347 0 0 0 0 1 FAM27E5 chr17:21826096 3'AG 21826096 Downstream 85bp
chr17 48562123 48562123 1 + G T COAD 48562120 + 48562100 48562140 41 TCCAGGGGTCTTCGGTGTTCCTGGGAGGGTCTGGCTGTGCT TCCAGGGGTCTTCGGTGTTCCTGTGAGGGTCTGGCTGTGCT < 41bp 0.789051309331258 0.419336023322809 0.910357 0.28471422 prediction 0.578102618662516 Functional Loss - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48562120 chr17:48562123 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_56349 0 0 1 0 1 RSAD1 chr17:48562105 3'AG 48562105 Downstream 19bp
chr19 56162797 56162797 1 + G T ESCA 56162795 + 56162775 56162815 41 GCGCCAGTGAGAGGAGGCGGCAGAAGCAGAAGGGAGGTGCT GCGCCAGTGAGAGGAGGCGGCATAAGCAGAAGGGAGGTGCT < 41bp 0.789020898226712 0.443096898874464 0.89935446 0.7789726 prediction 0.578041796453424 Functional Loss - CCDC106 ENSG00000173581 CDS Human protein_coding chr19:56162795 chr19:56162797 nonsynonymous SNV 0.926 1 23 hm5C_associated_SNPs_56353 0 0 0 0 1 CCDC106 chr19:56162861 5'GT 56162861 Upstream 65bp
chr3 133525472 133525472 1 + G T LUAD 133525469 + 133525449 133525489 41 ACAGTCTTCTGGAAGTTAATCCGGAGCAGAAGGAGCAGTCA ACAGTCTTCTGGAAGTTAATCCGTAGCAGAAGGAGCAGTCA < 41bp 0.788986932147987 0.408415528515201 0.87478405 0.36466748 prediction 0.577973864295974 Functional Loss - SRPRB ENSG00000144867 CDS Human protein_coding chr3:133525469 chr3:133525472 synonymous SNV . 0 24 hm5C_associated_SNPs_56356 0 0 1 0 1 SRPRB chr3:133525453 3'AG 133525453 Downstream 20bp
chr19 3162843 3162843 1 + G T ESCA 3162840 + 3162820 3162860 41 AGGTTCATCCTGGACATGTACACGAGGATGTACACCGGGTG AGGTTCATCCTGGACATGTACACTAGGATGTACACCGGGTG < 41bp 0.892635421723484 0.603649656738512 0.242095 0.09518698 prediction 0.577971529969944 Functional Loss - GNA15 ENSG00000060558 CDS Human protein_coding chr19:3162840 chr19:3162843 synonymous SNV . 0 24 hm5C_associated_SNPs_56357 0 0 0 0 1 GNA15 chr19:3162791 3'AG 3162791 Downstream 53bp
chr11 93127720 93127720 1 + G T UCEC 93127718 + 93127698 93127738 41 ACCTAACAGAAGAGCTTCATCAGAAGGAGATCACTATAGCA ACCTAACAGAAGAGCTTCATCATAAGGAGATCACTATAGCA < 41bp 0.829344411415161 0.540374054856886 0.82944554 0.2557708 prediction 0.577940713116549 Functional Loss - DEUP1 ENSG00000165325 CDS Human protein_coding chr11:93127718 chr11:93127720 nonsynonymous SNV 0.988 4 23 hm5C_associated_SNPs_56358 0 0 0 0 1 DEUP1 chr11:93127625 3'AG 93127625 Downstream 96bp
chr9 133327679 133327679 1 + G T LIHC 133327676 + 133327656 133327696 41 GCCTGGACACCTCGTGCATCCTCGTGTGGCTGAAGGAACAA GCCTGGACACCTCGTGCATCCTCTTGTGGCTGAAGGAACAA < 41bp 0.788954670313837 0.412398491982059 0.11382088 0.058364958 prediction 0.577909340627674 Functional Loss - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133327676 chr9:133327679 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_56360 0 0 1 0 2 ASS1 chr9:133327611 3'AG 133327611 Downstream 69bp
chr9 133327679 133327679 1 + G T LIHC 133327676 + 133327656 133327696 41 GCCTGGACACCTCGTGCATCCTCGTGTGGCTGAAGGAACAA GCCTGGACACCTCGTGCATCCTCTTGTGGCTGAAGGAACAA < 41bp 0.788954670313837 0.412398491982059 0.11382088 0.058364958 prediction 0.577909340627674 Functional Loss - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133327676 chr9:133327679 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_56360 0 0 1 0 2 ASS1 chr9:133327720 5'GT 133327720 Upstream 42bp
chr7 100210422 100210422 1 + G C CESC 100210421 + 100210401 100210441 41 CGCCCAGAGCCTGCATGCGCCGTGGGGCGCCCCAGGACCAG CGCCCAGAGCCTGCATGCGCCCTGGGGCGCCCCAGGACCAG < 41bp 0.800043846959637 0.511093101618232 0.26566547 0.122947484 prediction 0.577901490682811 Functional Loss - MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210421 chr7:100210422 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_56363 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 70bp
chr17 62075769 62075769 1 + G T UCEC 62075767 + 62075747 62075787 41 GCTGGGGTCGCTCCCCACCGCAGAGCGCAGTCCCGACGGTG GCTGGGGTCGCTCCCCACCGCATAGCGCAGTCCCGACGGTG < 41bp 0.788940567167233 0.460102998012496 0.52305216 0.34230775 prediction 0.577881134334466 Functional Loss - PRR29 ENSG00000224383 CDS Human protein_coding chr17:62075767 chr17:62075769 nonsynonymous SNV 0.006 3 23 hm5C_associated_SNPs_56364 0 0 0 0 1 PRR29 chr17:62075784 5'GT 62075784 Upstream 16bp
chr22 31521871 31521871 1 + G T LUAD 31521868 + 31521848 31521888 41 ACACAGAGTACAGGGCCTGGCAGGTGCCTGAGCCCCAACCT ACACAGAGTACAGGGCCTGGCAGTTGCCTGAGCCCCAACCT < 41bp 0.788938234258958 0.406877267658772 0.9052266 0.5374924 prediction 0.577876468517915 Functional Loss - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31521868 chr22:31521871 nonsynonymous SNV 0.696 1 24 hm5C_associated_SNPs_56365 0 0 0 0 1 INPP5J chr22:31521819 3'AG 31521819 Downstream 53bp
chr19 3381731 3381731 1 + G C LUAD 3381730 + 3381710 3381750 41 GATGAGTTCCACCCGTTCATCGAGGCCCTGCTGCCTCACGT GATGAGTTCCACCCGTTCATCCAGGCCCTGCTGCCTCACGT < 41bp 0.813894792372689 0.52496279405465 0.9242172 0.707187 prediction 0.577863996636078 Functional Loss - NFIC ENSG00000141905 CDS Human protein_coding chr19:3381730 chr19:3381731 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_56366 0 0 1 0 1 NFIC chr19:3381710 3'AG 3381710 Downstream 22bp
chr9 140128604 140128604 1 + G T COAD 140128601 + 140128581 140128621 41 ACGGAGCTCACGGACCTGGCCGTGGGCTGCATCCTGCTGGC ACGGAGCTCACGGACCTGGCCGTTGGCTGCATCCTGCTGGC < 41bp 0.788921971901513 0.402916198883073 0.8790802 0.35082382 prediction 0.577843943803027 Functional Loss - SLC34A3 ENSG00000198569 CDS Human protein_coding chr9:140128601 chr9:140128604 synonymous SNV . 0 24 hm5C_associated_SNPs_56367 0 0 0 0 1 SLC34A3 chr9:140128561 3'AG 140128561 Downstream 44bp
chr3 122353935 122353935 1 + G T COAD 122353932 + 122353912 122353952 41 AAGAAAAGGCAAATGGATATCAAGAATGACCATAAGAATAA AAGAAAAGGCAAATGGATATCAATAATGACCATAAGAATAA < 41bp 0.878189598056523 0.589271315891516 0.24942783 0.20517474 prediction 0.577836564330013 Functional Loss - PARP15 ENSG00000173200 CDS Human protein_coding chr3:122353932 chr3:122353935 nonsynonymous SNV 0.179 3 24 hm5C_associated_SNPs_56369 0 0 0 0 1 PARP15 chr3:122353867 3'AG 122353867 Downstream 69bp
chr12 113307801 113307801 1 + G T UCEC 113307798 + 113307778 113307818 41 TCTAGCCGAGATTCAGAGAGCTGGGACCACAGTGGGGGTGC TCTAGCCGAGATTCAGAGAGCTGTGACCACAGTGGGGGTGC < 41bp 0.788911396483515 0.413194619178048 0.7742791 0.32232374 prediction 0.57782279296703 Functional Loss - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113307798 chr12:113307801 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_56371 0 0 0 0 1 RPH3A chr12:113307844 5'GT 113307844 Upstream 44bp
chr6 36193116 36193116 1 + G C HNSC 36193115 + 36193095 36193135 41 AGCTGGTGTGGGCCAAGTGCCGAGGCTACCCCTCCTACCCT AGCTGGTGTGGGCCAAGTGCCCAGGCTACCCCTCCTACCCT < 41bp 0.788904831391662 0.489547292203346 0.9341296 0.92280006 prediction 0.577809662783324 Functional Loss - BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36193115 chr6:36193116 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_56374 0 0 1 0 3 BRPF3 chr6:36193044 3'AG 36193044 Downstream 73bp
chr6 36193116 36193116 1 + G C HNSC 36193115 + 36193095 36193135 41 AGCTGGTGTGGGCCAAGTGCCGAGGCTACCCCTCCTACCCT AGCTGGTGTGGGCCAAGTGCCCAGGCTACCCCTCCTACCCT < 41bp 0.788904831391662 0.489547292203346 0.9341296 0.92280006 prediction 0.577809662783324 Functional Loss - BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36193115 chr6:36193116 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_56374 0 0 1 0 3 BRPF3 chr6:36193048 3'AG 36193048 Downstream 69bp
chr6 36193116 36193116 1 + G C HNSC 36193115 + 36193095 36193135 41 AGCTGGTGTGGGCCAAGTGCCGAGGCTACCCCTCCTACCCT AGCTGGTGTGGGCCAAGTGCCCAGGCTACCCCTCCTACCCT < 41bp 0.788904831391662 0.489547292203346 0.9341296 0.92280006 prediction 0.577809662783324 Functional Loss - BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36193115 chr6:36193116 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_56374 0 0 1 0 3 BRPF3 chr6:36193141 5'GT 36193141 Upstream 26bp
chr6 33173447 33173447 1 + G T OV 33173445 + 33173425 33173465 41 CGTGGGGCAGACAAACTATGCAGCATCCAAGGCTGGAGTGA CGTGGGGCAGACAAACTATGCATCATCCAAGGCTGGAGTGA < 41bp 0.788888493786698 0.472556387415266 0.87666994 0.32225376 prediction 0.577776987573397 Functional Loss - HSD17B8 ENSG00000204228 CDS Human protein_coding chr6:33173445 chr6:33173447 nonsynonymous SNV 0.719 1 23 hm5C_associated_SNPs_56375 0 0 1 0 2 HSD17B8 chr6:33173417 3'AG 33173417 Downstream 31bp
chr6 33173447 33173447 1 + G T OV 33173445 + 33173425 33173465 41 CGTGGGGCAGACAAACTATGCAGCATCCAAGGCTGGAGTGA CGTGGGGCAGACAAACTATGCATCATCCAAGGCTGGAGTGA < 41bp 0.788888493786698 0.472556387415266 0.87666994 0.32225376 prediction 0.577776987573397 Functional Loss - HSD17B8 ENSG00000204228 CDS Human protein_coding chr6:33173445 chr6:33173447 nonsynonymous SNV 0.719 1 23 hm5C_associated_SNPs_56375 0 0 1 0 2 HSD17B8 chr6:33173502 5'GT 33173502 Upstream 56bp
chr21 33840135 33840135 1 + G C LUSC 33840131 + 33840111 33840151 41 GAAAGGGACATCTGCTCCTCCAAGGCAGAGCGGCTCCCCCC GAAAGGGACATCTGCTCCTCCAAGCCAGAGCGGCTCCCCCC < 41bp 0.794172347221072 0.505288390270398 0.4698303 0.33483282 prediction 0.577767913901348 Functional Loss - EVA1C ENSG00000166979 CDS Human protein_coding chr21:33840131 chr21:33840135 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_56377 0 0 0 0 1 EVA1C chr21:33840156 5'GT 33840156 Upstream 22bp
chr6 47763218 47763218 1 + G T GBM 47763215 + 47763195 47763235 41 TCCTACGTAAAGATCATTGCCAAGGTTAAGTCCTCTTCCAA TCCTACGTAAAGATCATTGCCAATGTTAAGTCCTCTTCCAA < 41bp 0.788866928281543 0.406069000997109 0.85217524 0.1806584 prediction 0.577733856563086 Functional Loss - OPN5 ENSG00000124818 CDS Human protein_coding chr6:47763215 chr6:47763218 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_56378 0 0 0 0 1 OPN5 chr6:47763299 5'GT 47763299 Upstream 82bp
chr4 146563538 146563538 1 + G T SKCM 146563536 + 146563516 146563556 41 ATTGTCTGGGCCCCCTGGTGCTGGAAAATCAACATTTATAG ATTGTCTGGGCCCCCTGGTGCTTGAAAATCAACATTTATAG < 41bp 0.83530578708996 0.546464506734098 0.14409542 0.0386253 prediction 0.577682560711724 Functional Loss - MMAA ENSG00000151611 CDS Human protein_coding chr4:146563536 chr4:146563538 stopgain 1.000 1 23 hm5C_associated_SNPs_56381 0 0 0 6 2 MMAA chr4:146563515 3'AG 146563515 Downstream 24bp
chr4 146563538 146563538 1 + G T SKCM 146563536 + 146563516 146563556 41 ATTGTCTGGGCCCCCTGGTGCTGGAAAATCAACATTTATAG ATTGTCTGGGCCCCCTGGTGCTTGAAAATCAACATTTATAG < 41bp 0.83530578708996 0.546464506734098 0.14409542 0.0386253 prediction 0.577682560711724 Functional Loss - MMAA ENSG00000151611 CDS Human protein_coding chr4:146563536 chr4:146563538 stopgain 1.000 1 23 hm5C_associated_SNPs_56381 0 0 0 6 2 MMAA chr4:146563637 5'GT 146563637 Upstream 100bp
chr11 93487189 93487189 1 + G T THCA 93487186 + 93487166 93487206 41 GAGCAGGTCCATTTCAGACTCTCGGGTTCAATTCTGAGGTC GAGCAGGTCCATTTCAGACTCTCTGGTTCAATTCTGAGGTC < 41bp 0.880479750508212 0.591642766450851 0.481024 0.36591554 prediction 0.577673968114723 Functional Loss - C11orf54 ENSG00000182919 CDS Human protein_coding chr11:93487186 chr11:93487189 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_56382 0 0 1 0 2 C11orf54 chr11:93487102 3'AG 93487102 Downstream 88bp
chr11 93487189 93487189 1 + G T THCA 93487186 + 93487166 93487206 41 GAGCAGGTCCATTTCAGACTCTCGGGTTCAATTCTGAGGTC GAGCAGGTCCATTTCAGACTCTCTGGTTCAATTCTGAGGTC < 41bp 0.880479750508212 0.591642766450851 0.481024 0.36591554 prediction 0.577673968114723 Functional Loss - C11orf54 ENSG00000182919 CDS Human protein_coding chr11:93487186 chr11:93487189 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_56382 0 0 1 0 2 C11orf54 chr11:93487203 5'GT 93487203 Upstream 15bp
chr7 100395212 100395212 1 + G T STAD 100395209 + 100395189 100395229 41 TGCCTTCTAGAGAGAAAACGCAGGAGGGAGACAGACTGGCC TGCCTTCTAGAGAGAAAACGCAGTAGGGAGACAGACTGGCC < 41bp 0.788834730705748 0.425082403669163 0.8961667 0.74652994 prediction 0.577669461411496 Functional Loss - ZAN ENSG00000146839 CDS Human protein_coding chr7:100395209 chr7:100395212 stopgain 0.000 0 24 hm5C_associated_SNPs_56383 0 0 0 0 2 ZAN chr7:100395199 3'AG 100395199 Downstream 14bp
chr7 100395212 100395212 1 + G T STAD 100395209 + 100395189 100395229 41 TGCCTTCTAGAGAGAAAACGCAGGAGGGAGACAGACTGGCC TGCCTTCTAGAGAGAAAACGCAGTAGGGAGACAGACTGGCC < 41bp 0.788834730705748 0.425082403669163 0.8961667 0.74652994 prediction 0.577669461411496 Functional Loss - ZAN ENSG00000146839 CDS Human protein_coding chr7:100395209 chr7:100395212 stopgain 0.000 0 24 hm5C_associated_SNPs_56383 0 0 0 0 2 ZAN chr7:100395245 5'GT 100395245 Upstream 34bp
chr1 196874340 196874340 1 + G T LUAD 196874337 + 196874317 196874357 41 AACACAATATAATTGTAAACCAGGATATGCAACAGCAGAGG AACACAATATAATTGTAAACCAGTATATGCAACAGCAGAGG < 41bp 0.788779905865595 0.441671736433551 0.1433259 0.056371152 prediction 0.577559811731189 Functional Loss - CFHR4 ENSG00000134365 CDS Human protein_coding chr1:196874337 chr1:196874340 nonsynonymous SNV 0.021 3 24 hm5C_associated_SNPs_56392 0 0 0 0 1 CFHR4 chr1:196874420 5'GT 196874420 Upstream 81bp
chr16 2423996 2423996 1 + G T rs147699649 2423993 + 2423973 2424013 41 GGACTGGAAAGCTGGTTACACTGGGTTGCTTGGTTCATCAC GGACTGGAAAGCTGGTTACACTGTGTTGCTTGGTTCATCAC < 41bp 0.788755542062026 0.418717913048491 0.8807721 0.112966776 prediction 0.577511084124052 Functional Loss - ABCA17P ENSG00000238098 ncRNA_exonic Human transcribed_unitary_pseudogene chr16:2423993 chr16:2423996 . . 0 24 hm5C_associated_SNPs_56395 0 0 0 0 2 ABCA17P chr16:2423955 3'AG 2423955 Downstream 42bp
chr16 2423996 2423996 1 + G T rs147699649 2423993 + 2423973 2424013 41 GGACTGGAAAGCTGGTTACACTGGGTTGCTTGGTTCATCAC GGACTGGAAAGCTGGTTACACTGTGTTGCTTGGTTCATCAC < 41bp 0.788755542062026 0.418717913048491 0.8807721 0.112966776 prediction 0.577511084124052 Functional Loss - ABCA17P ENSG00000238098 ncRNA_exonic Human transcribed_unitary_pseudogene chr16:2423993 chr16:2423996 . . 0 24 hm5C_associated_SNPs_56395 0 0 0 0 2 ABCA17P chr16:2424071 5'GT 2424071 Upstream 76bp
chr3 184060596 184060596 1 + G T UCEC 184060593 + 184060573 184060613 41 GCATGGTCTTCGGTGGATGGCGAGGACTCCACTGATGACTC GCATGGTCTTCGGTGGATGGCGATGACTCCACTGATGACTC < 41bp 0.788734254588008 0.399624031367784 0.8479887 0.26449084 prediction 0.577468509176017 Functional Loss - FAM131A ENSG00000175182 CDS Human protein_coding chr3:184060593 chr3:184060596 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_56396 0 0 1 0 2 FAM131A chr3:184060532 3'AG 184060532 Downstream 65bp
chr3 184060596 184060596 1 + G T UCEC 184060593 + 184060573 184060613 41 GCATGGTCTTCGGTGGATGGCGAGGACTCCACTGATGACTC GCATGGTCTTCGGTGGATGGCGATGACTCCACTGATGACTC < 41bp 0.788734254588008 0.399624031367784 0.8479887 0.26449084 prediction 0.577468509176017 Functional Loss - FAM131A ENSG00000175182 CDS Human protein_coding chr3:184060593 chr3:184060596 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_56396 0 0 1 0 2 FAM131A chr3:184060648 5'GT 184060648 Upstream 53bp
chr19 58549569 58549569 1 + A T LUAD 58549565 + 58549545 58549585 41 AGGACCTCACACAGATGTGCCAGCAGGAAGGTGAGAGGCGC AGGACCTCACACAGATGTGCCAGCTGGAAGGTGAGAGGCGC < 41bp 0.790775775924723 0.502044121685277 0.34390372 0.3833934 prediction 0.577463308478892 Functional Loss - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58549565 chr19:58549569 nonsynonymous SNV 0.065 2 25 hm5C_associated_SNPs_56397 0 0 0 0 1 ZSCAN1 chr19:58549574 5'GT 58549574 Upstream 6bp
chr2 187367272 187367272 1 + G T UCEC 187367269 + 187367249 187367289 41 AAGCTGGAAGAAGTAGTGAACAAGAAGCACGGTGAGGCGGA AAGCTGGAAGAAGTAGTGAACAATAAGCACGGTGAGGCGGA < 41bp 0.799833357330993 0.511136916241263 0.3577608 0.1442481 prediction 0.57739288217946 Functional Loss - ZC3H15 ENSG00000065548;ENSG00000268846 CDS Human other chr2:187367269 chr2:187367272 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_56398 0 0 1 0 2 ZC3H15 chr2:187367223 3'AG 187367223 Downstream 50bp
chr2 187367272 187367272 1 + G T UCEC 187367269 + 187367249 187367289 41 AAGCTGGAAGAAGTAGTGAACAAGAAGCACGGTGAGGCGGA AAGCTGGAAGAAGTAGTGAACAATAAGCACGGTGAGGCGGA < 41bp 0.799833357330993 0.511136916241263 0.3577608 0.1442481 prediction 0.57739288217946 Functional Loss - ZC3H15 ENSG00000065548;ENSG00000268846 CDS Human other chr2:187367269 chr2:187367272 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_56398 0 0 1 0 2 ZC3H15 chr2:187367314 5'GT 187367314 Upstream 43bp
chr2 66670158 66670158 1 + G T COAD 66670155 + 66670135 66670175 41 ATCAGACAGTGAAGATATAACAAGATCAGCAAATCTAACTG ATCAGACAGTGAAGATATAACAATATCAGCAAATCTAACTG < 41bp 0.788696130301021 0.435064688041634 0.25917563 0.055982113 prediction 0.577392260602041 Functional Loss - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66670155 chr2:66670158 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_56399 0 0 0 1 1 MEIS1 chr2:66670180 5'GT 66670180 Upstream 23bp
chr1 26356983 26356983 1 + A T STAD 26356979 + 26356959 26356999 41 TGCTCCAGGTCCTGGCTGCCCTCCAGGAGATGTCCCCTGCA TGCTCCAGGTCCTGGCTGCCCTCCTGGAGATGTCCCCTGCA < 41bp 0.788696103323261 0.463594044854258 0.95058477 0.08570522 prediction 0.577392206646522 Functional Loss - EXTL1 ENSG00000158008 CDS Human protein_coding chr1:26356979 chr1:26356983 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_56400 0 0 0 0 1 EXTL1 chr1:26356967 3'AG 26356967 Downstream 17bp
chr12 110353227 110353227 1 + A C BLCA 110353223 + 110353203 110353243 41 CTCAGGTTGCAGAGCGCCGGCTGCAGGCATGGGAAGCAGAC CTCAGGTTGCAGAGCGCCGGCTGCCGGCATGGGAAGCAGAC < 41bp 0.788692827180477 0.3739127521997 0.35644928 0.20335662 prediction 0.577385654360953 Functional Loss - TCHP ENSG00000139437 CDS Human protein_coding chr12:110353223 chr12:110353227 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_56401 0 0 1 0 1 TCHP chr12:110353208 3'AG 110353208 Downstream 20bp
chr19 17452350 17452350 1 + G T LUAD 17452348 + 17452328 17452368 41 CAAGGCACCAGCACCACCTCCAGGGTTGCCTGGATGCCCTC CAAGGCACCAGCACCACCTCCATGGTTGCCTGGATGCCCTC < 41bp 0.788688444037726 0.457351932073111 0.9239282 0.36055467 prediction 0.577376888075452 Functional Loss - GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17452348 chr19:17452350 nonsynonymous SNV 0.685 0 23 hm5C_associated_SNPs_56403 0 0 1 0 1 GTPBP3 chr19:17452287 3'AG 17452287 Downstream 64bp
chr2 7035938 7035938 1 + G T LUAD 7035936 + 7035916 7035956 41 TTCTGAACTGTAGAAAGGGACGGAAGGACCCTTCCAAGTCC TTCTGAACTGTAGAAAGGGACGTAAGGACCCTTCCAAGTCC < 41bp 0.788684264647658 0.477225860780931 0.12043229 0.1313906 prediction 0.577368529295316 Functional Loss - RSAD2 ENSG00000134321 CDS Human protein_coding chr2:7035936 chr2:7035938 synonymous SNV . 0 23 hm5C_associated_SNPs_56404 0 0 0 0 1 RSAD2 chr2:7035909 3'AG 7035909 Downstream 30bp
chr19 17877562 17877562 1 + G T COAD 17877560 + 17877540 17877580 41 TGGAACTGACACGGAAGTTACAGGATCTCATCAAGGACGTT TGGAACTGACACGGAAGTTACATGATCTCATCAAGGACGTT < 41bp 0.788677167985569 0.472942966900574 0.3451332 0.1792875 prediction 0.577354335971138 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17877560 chr19:17877562 nonsynonymous SNV 0.954 0 23 hm5C_associated_SNPs_56406 0 0 0 0 2 FCHO1 chr19:17877478 3'AG 17877478 Downstream 85bp
chr19 17877562 17877562 1 + G T COAD 17877560 + 17877540 17877580 41 TGGAACTGACACGGAAGTTACAGGATCTCATCAAGGACGTT TGGAACTGACACGGAAGTTACATGATCTCATCAAGGACGTT < 41bp 0.788677167985569 0.472942966900574 0.3451332 0.1792875 prediction 0.577354335971138 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17877560 chr19:17877562 nonsynonymous SNV 0.954 0 23 hm5C_associated_SNPs_56406 0 0 0 0 2 FCHO1 chr19:17877619 5'GT 17877619 Upstream 58bp
chr12 133196898 133196898 1 + G T BLCA 133196895 + 133196875 133196915 41 CCAAATTTCACCATCCTCATCAAGAACAGCATCCACTACCC CCAAATTTCACCATCCTCATCAATAACAGCATCCACTACCC < 41bp 0.7886697036149 0.397985448888321 0.15438151 0.06660125 prediction 0.577339407229801 Functional Loss - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133196895 chr12:133196898 stopgain 1.000 4 24 hm5C_associated_SNPs_56407 0 0 0 0 2 P2RX2 chr12:133196853 3'AG 133196853 Downstream 46bp
chr12 133196898 133196898 1 + G T BLCA 133196895 + 133196875 133196915 41 CCAAATTTCACCATCCTCATCAAGAACAGCATCCACTACCC CCAAATTTCACCATCCTCATCAATAACAGCATCCACTACCC < 41bp 0.7886697036149 0.397985448888321 0.15438151 0.06660125 prediction 0.577339407229801 Functional Loss - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133196895 chr12:133196898 stopgain 1.000 4 24 hm5C_associated_SNPs_56407 0 0 0 0 2 P2RX2 chr12:133196933 5'GT 133196933 Upstream 36bp
chr1 158152092 158152092 1 + A T ESCA 158152088 + 158152068 158152108 41 TTGAGTCAGGGAAGTCGGAACTGAAGAAGCAAGGTCAGCCT TTGAGTCAGGGAAGTCGGAACTGATGAAGCAAGGTCAGCCT < 41bp 0.821377631783115 0.532724250987467 0.21366951 0.20400241 prediction 0.577306761591297 Functional Loss - CD1D ENSG00000158473 CDS Human protein_coding chr1:158152088 chr1:158152092 nonsynonymous SNV 0.745 1 25 hm5C_associated_SNPs_56409 0 0 0 0 1 CD1D chr1:158152100 5'GT 158152100 Upstream 9bp
chr11 63176247 63176247 1 + G T READ 63176244 + 63176224 63176264 41 GTGTATTCTCCACCCCTGCCCTGGATCATCTATGGAGTCTT GTGTATTCTCCACCCCTGCCCTGTATCATCTATGGAGTCTT < 41bp 0.788649968559645 0.405328474599021 0.074344665 0.030023009 prediction 0.57729993711929 Functional Loss - SLC22A9 ENSG00000149742 CDS Human protein_coding chr11:63176244 chr11:63176247 nonsynonymous SNV 0.822 3 24 hm5C_associated_SNPs_56410 0 0 0 0 1 SLC22A9 chr11:63176148 3'AG 63176148 Downstream 100bp
chr17 61555453 61555453 1 + G T rs3729659 61555451 + 61555431 61555471 41 CCAACCTGCCCCTGGCTAAGCGGCAGCAGGTGGGCTGAGGG CCAACCTGCCCCTGGCTAAGCGTCAGCAGGTGGGCTGAGGG < 41bp 0.84761661371939 0.55899535469704 0.37853497 0.043555617 prediction 0.5772425180447 Functional Loss - ACE ENSG00000159640 CDS Human protein_coding chr17:61555451 chr17:61555453 synonymous SNV . 0 23 hm5C_associated_SNPs_56412 1 0 0 0 1 ACE chr17:61555459 5'GT 61555459 Upstream 7bp
chr21 30411834 30411834 1 + A T UCEC 30411830 + 30411810 30411850 41 GGTTTAAAGGCTATCAGCAGCAAGACAGCCAGGAGCTGCTT GGTTTAAAGGCTATCAGCAGCAAGTCAGCCAGGAGCTGCTT < 41bp 0.816983884916047 0.528364872660514 0.28003967 0.14712453 prediction 0.577238024511067 Functional Loss - USP16 ENSG00000156256 CDS Human protein_coding chr21:30411830 chr21:30411834 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_56413 0 0 1 0 2 USP16 chr21:30411802 3'AG 30411802 Downstream 33bp
chr21 30411834 30411834 1 + A T UCEC 30411830 + 30411810 30411850 41 GGTTTAAAGGCTATCAGCAGCAAGACAGCCAGGAGCTGCTT GGTTTAAAGGCTATCAGCAGCAAGTCAGCCAGGAGCTGCTT < 41bp 0.816983884916047 0.528364872660514 0.28003967 0.14712453 prediction 0.577238024511067 Functional Loss - USP16 ENSG00000156256 CDS Human protein_coding chr21:30411830 chr21:30411834 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_56413 0 0 1 0 2 USP16 chr21:30411889 5'GT 30411889 Upstream 56bp
chr19 13084213 13084213 1 + G T LUSC 13084210 + 13084190 13084230 41 CCTCCGGCCCCAGGTGTTCTCCCGGCCCGGCTGCTCAGCCA CCTCCGGCCCCAGGTGTTCTCCCTGCCCGGCTGCTCAGCCA < 41bp 0.897661675379315 0.609082370059807 0.9237273 0.28934395 prediction 0.577158610639017 Functional Loss - DAND5 ENSG00000179284 CDS Human protein_coding chr19:13084210 chr19:13084213 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_56419 0 0 0 0 1 DAND5 chr19:13084203 3'AG 13084203 Downstream 11bp
chr3 113344997 113344997 1 + G T STAD 113344994 + 113344974 113345014 41 AGAACCGCGAGTGCATTCTGCTGGATTTCTTCGATGACCAT AGAACCGCGAGTGCATTCTGCTGTATTTCTTCGATGACCAT < 41bp 0.788577411734546 0.413259960066446 0.3092011 0.13582346 prediction 0.577154823469092 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113344994 chr3:113344997 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_56420 0 0 0 0 2 SIDT1 chr3:113344949 3'AG 113344949 Downstream 49bp
chr3 113344997 113344997 1 + G T STAD 113344994 + 113344974 113345014 41 AGAACCGCGAGTGCATTCTGCTGGATTTCTTCGATGACCAT AGAACCGCGAGTGCATTCTGCTGTATTTCTTCGATGACCAT < 41bp 0.788577411734546 0.413259960066446 0.3092011 0.13582346 prediction 0.577154823469092 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113344994 chr3:113344997 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_56420 0 0 0 0 2 SIDT1 chr3:113345062 5'GT 113345062 Upstream 66bp
chr2 79349137 79349137 1 + G C LUSC 79349136 + 79349116 79349156 41 CTATTGCCAGAACATGAATTCGGGCAACCTGGTGTCTGTGC CTATTGCCAGAACATGAATTCCGGCAACCTGGTGTCTGTGC < 41bp 0.788542411728648 0.486990373822139 0.9257888 0.8389595 prediction 0.577084823457296 Functional Loss - REG1A ENSG00000115386 CDS Human protein_coding chr2:79349136 chr2:79349137 synonymous SNV . 0 22 hm5C_associated_SNPs_56423 0 0 0 0 1 REG1A chr2:79349114 3'AG 79349114 Downstream 24bp
chr18 9931897 9931897 1 + G C BRCA 9931896 + 9931876 9931916 41 AAGTGAAGACTACAGCACCTCGCCGGTACTGTGTGAGGCCC AAGTGAAGACTACAGCACCTCCCCGGTACTGTGTGAGGCCC < 41bp 0.788509225743093 0.497079929288422 0.051138848 0.02706191 prediction 0.577018451486185 Functional Loss - VAPA ENSG00000101558 CDS Human protein_coding chr18:9931896 chr18:9931897 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_56430 0 0 1 0 2 VAPA chr18:9931807 3'AG 9931807 Downstream 91bp
chr18 9931897 9931897 1 + G C BRCA 9931896 + 9931876 9931916 41 AAGTGAAGACTACAGCACCTCGCCGGTACTGTGTGAGGCCC AAGTGAAGACTACAGCACCTCCCCGGTACTGTGTGAGGCCC < 41bp 0.788509225743093 0.497079929288422 0.051138848 0.02706191 prediction 0.577018451486185 Functional Loss - VAPA ENSG00000101558 CDS Human protein_coding chr18:9931896 chr18:9931897 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_56430 0 0 1 0 2 VAPA chr18:9931959 5'GT 9931959 Upstream 63bp
chr8 7807638 7807638 1 + G T UCEC 7807635 + 7807615 7807655 41 GGGAAGGAAGAGTATTTCTTCAAGACCAGAATCCAGGTAAG GGGAAGGAAGAGTATTTCTTCAATACCAGAATCCAGGTAAG < 41bp 0.88441219660383 0.595927474353529 0.31873837 0.21162274 prediction 0.576969444500602 Functional Loss - ZNF705B ENSG00000215356 CDS Human protein_coding chr8:7807635 chr8:7807638 nonsynonymous SNV 0.033 1 24 hm5C_associated_SNPs_56431 0 0 0 0 1 ZNF705B chr8:7807650 5'GT 7807650 Upstream 13bp
chr5 177546899 177546899 1 + G T LUAD 177546897 + 177546877 177546917 41 GCAAGACCTCGCTGCCAGAACGGGGTCGCTTTGACAAGGTG GCAAGACCTCGCTGCCAGAACGTGGTCGCTTTGACAAGGTG < 41bp 0.788465697825041 0.460110117196743 0.77929175 0.2462224 prediction 0.576931395650082 Functional Loss - N4BP3 ENSG00000145911 CDS Human protein_coding chr5:177546897 chr5:177546899 synonymous SNV . 0 23 hm5C_associated_SNPs_56437 0 0 0 0 1 N4BP3 chr5:177546914 5'GT 177546914 Upstream 16bp
chr8 27297833 27297833 1 + G T THYM 27297831 + 27297811 27297851 41 ACAAGGATGTCATCGGGGTGCTGGAGAAAGGAGACCGGCTG ACAAGGATGTCATCGGGGTGCTTGAGAAAGGAGACCGGCTG < 41bp 0.843534373920682 0.555078402462391 0.89996254 0.4659164 prediction 0.576911942916581 Functional Loss - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27297831 chr8:27297833 synonymous SNV . 0 23 hm5C_associated_SNPs_56439 0 0 1 0 1 PTK2B chr8:27297754 3'AG 27297754 Downstream 80bp
chr19 50208371 50208371 1 + G T LIHC 50208368 + 50208348 50208388 41 CTGAACCGCCAGGAGATACCCCCGGTGAGAGGGCCCCAGTG CTGAACCGCCAGGAGATACCCCCTGTGAGAGGGCCCCAGTG < 41bp 0.788451459741778 0.406174080999719 0.5291859 0.014473915 prediction 0.576902919483556 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50208368 chr19:50208371 synonymous SNV . 0 24 hm5C_associated_SNPs_56441 0 0 0 0 2 CPT1C chr19:50208297 3'AG 50208297 Downstream 75bp
chr19 50208371 50208371 1 + G T LIHC 50208368 + 50208348 50208388 41 CTGAACCGCCAGGAGATACCCCCGGTGAGAGGGCCCCAGTG CTGAACCGCCAGGAGATACCCCCTGTGAGAGGGCCCCAGTG < 41bp 0.788451459741778 0.406174080999719 0.5291859 0.014473915 prediction 0.576902919483556 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50208368 chr19:50208371 synonymous SNV . 0 24 hm5C_associated_SNPs_56441 0 0 0 0 2 CPT1C chr19:50208371 5'GT 50208371 Upstream 1bp
chrX 1531700 1531700 1 + A T rs113135794 1531696 + 1531676 1531716 41 CTGGCCAGTCATGCAGGATCCGGCACAGGACGTACAGCTCA CTGGCCAGTCATGCAGGATCCGGCTCAGGACGTACAGCTCA < 41bp 0.824310655571436 0.535876358479775 0.19574371 0.250562 prediction 0.576868594183321 Functional Loss - ASMTL ENSG00000169093 CDS Human protein_coding chrX:1531696 chrX:1531700 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_56445 0 0 1 0 2 ASMTL chrX:1531636 3'AG 1531636 Downstream 65bp
chrX 1531700 1531700 1 + A T rs113135794 1531696 + 1531676 1531716 41 CTGGCCAGTCATGCAGGATCCGGCACAGGACGTACAGCTCA CTGGCCAGTCATGCAGGATCCGGCTCAGGACGTACAGCTCA < 41bp 0.824310655571436 0.535876358479775 0.19574371 0.250562 prediction 0.576868594183321 Functional Loss - ASMTL ENSG00000169093 CDS Human antisense chrX:1531696 chrX:1531700 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_56445 0 0 1 0 2 ASMTL-AS1 chrX:1531781 5'GT 1531781 Upstream 82bp
chr3 50036894 50036894 1 + G T SARC 50036892 + 50036872 50036912 41 GGTTACGACTATGGCTATGTCTGCGTGGAGTTTTCACTCTT GGTTACGACTATGGCTATGTCTTCGTGGAGTTTTCACTCTT < 41bp 0.788432807748389 0.483505655373622 0.10605237 0.11191264 prediction 0.576865615496777 Functional Loss - RBM6 ENSG00000004534 CDS Human protein_coding chr3:50036892 chr3:50036894 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_56446 0 0 1 0 2 RBM6 chr3:50036873 3'AG 50036873 Downstream 22bp
chr3 50036894 50036894 1 + G T SARC 50036892 + 50036872 50036912 41 GGTTACGACTATGGCTATGTCTGCGTGGAGTTTTCACTCTT GGTTACGACTATGGCTATGTCTTCGTGGAGTTTTCACTCTT < 41bp 0.788432807748389 0.483505655373622 0.10605237 0.11191264 prediction 0.576865615496777 Functional Loss - RBM6 ENSG00000004534 CDS Human protein_coding chr3:50036892 chr3:50036894 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_56446 0 0 1 0 2 RBM6 chr3:50036946 5'GT 50036946 Upstream 53bp
chr5 50683369 50683369 1 + G T COAD 50683366 + 50683346 50683386 41 AAGTGCAGCATCGGCTTCAGCAAGAACGACTTCGTGATGCG AAGTGCAGCATCGGCTTCAGCAATAACGACTTCGTGATGCG < 41bp 0.891706796778654 0.603275368003286 0.23427707 0.0657672 prediction 0.576862857550736 Functional Loss - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50683366 chr5:50683369 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_56448 0 0 0 0 1 ISL1 chr5:50683324 3'AG 50683324 Downstream 46bp
chr17 73512653 73512653 1 + G T rs7216673 73512650 + 73512630 73512670 41 GGCGGCGGCGGGATGGAGCCCGAGCCCGAGCCCGCGGCCGT GGCGGCGGCGGGATGGAGCCCGATCCCGAGCCCGCGGCCGT < 41bp 0.877787080781383 0.589372045983326 0.59328544 0.3888729 prediction 0.576830069596113 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73512650 chr17:73512653 nonsynonymous SNV 0.132 0 24 hm5C_associated_SNPs_56451 2 0 1 0 1 TSEN54 chr17:73512697 5'GT 73512697 Upstream 45bp
chr1 173806114 173806114 1 + G T LUSC 173806112 + 173806092 173806132 41 TTTAGTACCATCCAGGGAACCTGGAAAGTTTTATTCTCTCC TTTAGTACCATCCAGGGAACCTTGAAAGTTTTATTCTCTCC < 41bp 0.835072707680985 0.546683158471473 0.29344064 0.094938755 prediction 0.576779098419024 Functional Loss - DARS2 ENSG00000117593 CDS Human protein_coding chr1:173806112 chr1:173806114 stopgain 1.000 1 23 hm5C_associated_SNPs_56456 0 0 1 0 1 DARS2 chr1:173806184 5'GT 173806184 Upstream 71bp
chr10 81901921 81901921 1 + G T UCEC 81901918 + 81901898 81901938 41 ACATGGCTGTGCAACGCCGTCTAGATGTCATGGAGGAGGTA ACATGGCTGTGCAACGCCGTCTATATGTCATGGAGGAGGTA < 41bp 0.788383685753023 0.434303759518522 0.39792895 0.18574342 prediction 0.576767371506045 Functional Loss - PLAC9 ENSG00000189129 CDS Human protein_coding chr10:81901918 chr10:81901921 nonsynonymous SNV 0.646 1 24 hm5C_associated_SNPs_56457 0 0 0 0 2 PLAC9 chr10:81901838 3'AG 81901838 Downstream 84bp
chr10 81901921 81901921 1 + G T UCEC 81901918 + 81901898 81901938 41 ACATGGCTGTGCAACGCCGTCTAGATGTCATGGAGGAGGTA ACATGGCTGTGCAACGCCGTCTATATGTCATGGAGGAGGTA < 41bp 0.788383685753023 0.434303759518522 0.39792895 0.18574342 prediction 0.576767371506045 Functional Loss - PLAC9 ENSG00000189129 CDS Human protein_coding chr10:81901918 chr10:81901921 nonsynonymous SNV 0.646 1 24 hm5C_associated_SNPs_56457 0 0 0 0 2 PLAC9 chr10:81901935 5'GT 81901935 Upstream 15bp
chr2 139316703 139316703 1 + A T LUAD 139316699 + 139316679 139316719 41 TTAGGTAATCTCTGGGAAAACACAAGATTTACAGACTGCAG TTAGGTAATCTCTGGGAAAACACATGATTTACAGACTGCAG < 41bp 0.827160393497053 0.538782085270144 0.1569198 0.17916116 prediction 0.576756616453818 Functional Loss - SPOPL ENSG00000144228 CDS Human protein_coding chr2:139316699 chr2:139316703 stopgain 1.000 1 25 hm5C_associated_SNPs_56458 0 0 0 0 1 SPOPL chr2:139316769 5'GT 139316769 Upstream 67bp
chr7 23793962 23793962 1 + A T LUAD 23793958 + 23793938 23793978 41 GTCGACATCAGTGTCCGTTTCGGAAAAGACCTTTCAGATGC GTCGACATCAGTGTCCGTTTCGGATAAGACCTTTCAGATGC < 41bp 0.788356673083657 0.477516862217437 0.58675236 0.4151399 prediction 0.576713346167313 Functional Loss - STK31 ENSG00000196335 CDS Human protein_coding chr7:23793958 chr7:23793962 stopgain 0.956 0 25 hm5C_associated_SNPs_56461 0 0 0 0 1 STK31 chr7:23793934 3'AG 23793934 Downstream 29bp
chr7 23793960 23793960 1 + G T LUSC 23793958 + 23793938 23793978 41 GTCGACATCAGTGTCCGTTTCGGAAAAGACCTTTCAGATGC GTCGACATCAGTGTCCGTTTCGTAAAAGACCTTTCAGATGC < 41bp 0.788356673083657 0.466403640045122 0.58675236 0.20690921 prediction 0.576713346167313 Functional Loss - STK31 ENSG00000196335 CDS Human protein_coding chr7:23793958 chr7:23793960 nonsynonymous SNV 0.895 3 23 hm5C_associated_SNPs_56462 0 0 0 0 1 STK31 chr7:23793934 3'AG 23793934 Downstream 27bp
chr11 93800872 93800872 1 - C A LGG 93800874 - 93800854 93800894 41 GCAGGTTATCATCCACTTCCCAGGATTCTCGGCTATCATTT GCAGGTTATCATCCACTTCCCATGATTCTCGGCTATCATTT < 41bp 0.788332326336601 0.465796784588893 0.849282 0.16423404 prediction 0.576664652673203 Functional Loss - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93800874 chr11:93800872 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_56463 0 0 0 0 1 HEPHL1 chr11:93800909 3'AG 93800909 Downstream 38bp
chr2 231115765 231115765 1 + G T UCEC 231115762 + 231115742 231115782 41 GGAAGCCTCTAGCTCCCTAGCAAGATGTGGGTCAGGTAAAG GGAAGCCTCTAGCTCCCTAGCAATATGTGGGTCAGGTAAAG < 41bp 0.788301289753084 0.416813758394317 0.8998065 0.8142786 prediction 0.576602579506168 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231115762 chr2:231115765 nonsynonymous SNV 0.021 2 24 hm5C_associated_SNPs_56470 0 0 0 0 2 SP140 chr2:231115696 3'AG 231115696 Downstream 70bp
chr2 231115765 231115765 1 + G T UCEC 231115762 + 231115742 231115782 41 GGAAGCCTCTAGCTCCCTAGCAAGATGTGGGTCAGGTAAAG GGAAGCCTCTAGCTCCCTAGCAATATGTGGGTCAGGTAAAG < 41bp 0.788301289753084 0.416813758394317 0.8998065 0.8142786 prediction 0.576602579506168 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231115762 chr2:231115765 nonsynonymous SNV 0.021 2 24 hm5C_associated_SNPs_56470 0 0 0 0 2 SP140 chr2:231115776 5'GT 231115776 Upstream 12bp
chr22 44514977 44514977 1 + G T SARC 44514975 + 44514955 44514995 41 AGAGGATCATTGTGAAGCAGCTGGAGGAAGACCTGTATGAC AGAGGATCATTGTGAAGCAGCTTGAGGAAGACCTGTATGAC < 41bp 0.846056733148094 0.557758104260383 0.63789177 0.39667773 prediction 0.576597257775422 Functional Loss - PARVB ENSG00000188677 CDS Human protein_coding chr22:44514975 chr22:44514977 synonymous SNV . 0 23 hm5C_associated_SNPs_56471 0 0 1 0 2 PARVB chr22:44514918 3'AG 44514918 Downstream 60bp
chr22 44514977 44514977 1 + G T SARC 44514975 + 44514955 44514995 41 AGAGGATCATTGTGAAGCAGCTGGAGGAAGACCTGTATGAC AGAGGATCATTGTGAAGCAGCTTGAGGAAGACCTGTATGAC < 41bp 0.846056733148094 0.557758104260383 0.63789177 0.39667773 prediction 0.576597257775422 Functional Loss - PARVB ENSG00000188677 CDS Human protein_coding chr22:44514975 chr22:44514977 synonymous SNV . 0 23 hm5C_associated_SNPs_56471 0 0 1 0 2 PARVB chr22:44515020 5'GT 44515020 Upstream 44bp
chr20 42683148 42683148 1 + G T LUSC 42683146 + 42683126 42683166 41 TGGCCTCCATGTGGGACAGCCTGGGAGAGGAACAGAAGCAG TGGCCTCCATGTGGGACAGCCTTGGAGAGGAACAGAAGCAG < 41bp 0.788296499777364 0.465205050125092 0.38744974 0.1779621 prediction 0.576592999554728 Functional Loss - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42683146 chr20:42683148 nonsynonymous SNV 0.978 0 23 hm5C_associated_SNPs_56472 0 0 0 0 1 TOX2 chr20:42683166 5'GT 42683166 Upstream 19bp
chr3 102189322 102189322 1 + G T LUAD 102189320 + 102189300 102189340 41 TTCTGGCAGCGCGGTGCTCTCTGCTGGTCCCATCATTACTC TTCTGGCAGCGCGGTGCTCTCTTCTGGTCCCATCATTACTC < 41bp 0.843705579789914 0.555430609789878 0.47490552 0.33267444 prediction 0.576549940000072 Functional Loss - ZPLD1 ENSG00000170044 CDS Human protein_coding chr3:102189320 chr3:102189322 nonsynonymous SNV 0.935 3 23 hm5C_associated_SNPs_56473 0 0 0 0 2 ZPLD1 chr3:102189238 3'AG 102189238 Downstream 85bp
chr3 102189322 102189322 1 + G T LUAD 102189320 + 102189300 102189340 41 TTCTGGCAGCGCGGTGCTCTCTGCTGGTCCCATCATTACTC TTCTGGCAGCGCGGTGCTCTCTTCTGGTCCCATCATTACTC < 41bp 0.843705579789914 0.555430609789878 0.47490552 0.33267444 prediction 0.576549940000072 Functional Loss - ZPLD1 ENSG00000170044 CDS Human protein_coding chr3:102189320 chr3:102189322 nonsynonymous SNV 0.935 3 23 hm5C_associated_SNPs_56473 0 0 0 0 2 ZPLD1 chr3:102189346 5'GT 102189346 Upstream 25bp
chr3 14949214 14949214 1 + G T BLCA 14949211 + 14949191 14949231 41 CCAAGGGGATCTCCTCCAGCCAGGAAGGGTGAGTGCCGCCA CCAAGGGGATCTCCTCCAGCCAGTAAGGGTGAGTGCCGCCA < 41bp 0.891690300423587 0.603427763360728 0.83803016 0.4064581 prediction 0.576525074125718 Functional Loss - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14949211 chr3:14949214 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_56474 0 0 0 0 1 FGD5 chr3:14949147 3'AG 14949147 Downstream 68bp
chr5 96249063 96249063 1 + G T UCEC 96249061 + 96249041 96249081 41 AAGGAAAGGTTATCAAGACACAGAACTTGGCAGCTCTCCTT AAGGAAAGGTTATCAAGACACATAACTTGGCAGCTCTCCTT < 41bp 0.788258877705023 0.459478392992001 0.0772818 0.03211254 prediction 0.576517755410046 Functional Loss - ERAP2 ENSG00000164308 CDS Human protein_coding chr5:96249061 chr5:96249063 nonsynonymous SNV 0.016 3 23 hm5C_associated_SNPs_56475 0 0 0 1 2 ERAP2 chr5:96249021 3'AG 96249021 Downstream 43bp
chr5 96249063 96249063 1 + G T UCEC 96249061 + 96249041 96249081 41 AAGGAAAGGTTATCAAGACACAGAACTTGGCAGCTCTCCTT AAGGAAAGGTTATCAAGACACATAACTTGGCAGCTCTCCTT < 41bp 0.788258877705023 0.459478392992001 0.0772818 0.03211254 prediction 0.576517755410046 Functional Loss - ERAP2 ENSG00000164308 CDS Human protein_coding chr5:96249061 chr5:96249063 nonsynonymous SNV 0.016 3 23 hm5C_associated_SNPs_56475 0 0 0 1 2 ERAP2 chr5:96249161 5'GT 96249161 Upstream 99bp
chr6 43395875 43395875 1 + G C CESC 43395874 + 43395854 43395894 41 TGCCTGTTACTTGGGCACCCCGAGGTGGGTAGAGACGGGCG TGCCTGTTACTTGGGCACCCCCAGGTGGGTAGAGACGGGCG < 41bp 0.812934393670534 0.524675709002832 0.6944546 0.19541994 prediction 0.576517369335403 Functional Loss - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43395874 chr6:43395875 synonymous SNV . 0 22 hm5C_associated_SNPs_56476 0 0 1 0 1 ABCC10 chr6:43395877 5'GT 43395877 Upstream 3bp
chr7 129989827 129989827 1 + G T SARC 129989824 + 129989804 129989844 41 TTGGTGAACAAGGTGGACTTCTGGCGTGGCCCAGCCAGGCC TTGGTGAACAAGGTGGACTTCTGTCGTGGCCCAGCCAGGCC < 41bp 0.788236670020568 0.403263752638334 0.35683566 0.118828684 prediction 0.576473340041135 Functional Loss - CPA5 ENSG00000158525 CDS Human protein_coding chr7:129989824 chr7:129989827 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_56479 0 0 0 0 1 CPA5 chr7:129989816 3'AG 129989816 Downstream 12bp
chr9 109746677 109746677 1 + G C PRAD 109746676 + 109746656 109746696 41 AGGAACTGGACAGCCACCTTCGGGATGAGCATAAGGTACTT AGGAACTGGACAGCCACCTTCCGGATGAGCATAAGGTACTT < 41bp 0.789773683772721 0.501541514728937 0.9169855 0.8674203 prediction 0.576464338087566 Functional Loss - ZNF462 ENSG00000148143 CDS Human protein_coding chr9:109746676 chr9:109746677 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_56481 0 0 0 0 1 ZNF462 chr9:109746690 5'GT 109746690 Upstream 14bp
chr12 57180957 57180957 1 + A T LUSC 57180953 + 57180933 57180973 41 TGTTGAATTGTAGCACAAACCTGAACCTGGTCACTGACTGC TGTTGAATTGTAGCACAAACCTGATCCTGGTCACTGACTGC < 41bp 0.810295247139727 0.522085548556853 0.20225424 0.10305631 prediction 0.576419397165748 Functional Loss - HSD17B6 ENSG00000025423 CDS Human protein_coding chr12:57180953 chr12:57180957 nonsynonymous SNV 0.875 1 25 hm5C_associated_SNPs_56484 0 0 1 0 1 HSD17B6 chr12:57180909 3'AG 57180909 Downstream 49bp
chrX 155169387 155169387 1 + G T BRCA 155169385 + 155169365 155169405 41 TCTGTCACCTTCAAAACTACCAGCAGAAATCTTGCTCGAGC TCTGTCACCTTCAAAACTACCATCAGAAATCTTGCTCGAGC < 41bp 0.788205121845808 0.482616250408607 0.19734922 0.12728974 prediction 0.576410243691617 Functional Loss - VAMP7 ENSG00000124333 CDS Human protein_coding chrX:155169385 chrX:155169387 nonsynonymous SNV 0.986 0 23 hm5C_associated_SNPs_56485 0 0 1 0 2 VAMP7 chrX:155169365 3'AG 155169365 Downstream 23bp
chrX 155169387 155169387 1 + G T BRCA 155169385 + 155169365 155169405 41 TCTGTCACCTTCAAAACTACCAGCAGAAATCTTGCTCGAGC TCTGTCACCTTCAAAACTACCATCAGAAATCTTGCTCGAGC < 41bp 0.788205121845808 0.482616250408607 0.19734922 0.12728974 prediction 0.576410243691617 Functional Loss - VAMP7 ENSG00000124333 CDS Human protein_coding chrX:155169385 chrX:155169387 nonsynonymous SNV 0.986 0 23 hm5C_associated_SNPs_56485 0 0 1 0 2 VAMP7 chrX:155169457 5'GT 155169457 Upstream 71bp
chr1 228362898 228362898 1 + G T SARC 228362896 + 228362876 228362916 41 TCCAACCTGGCCTTCATGAACGGCGTGAGCTTCACCAAAGG TCCAACCTGGCCTTCATGAACGTCGTGAGCTTCACCAAAGG < 41bp 0.827121953162482 0.538926843716833 0.9063824 0.5664267 prediction 0.5763902188913 Functional Loss - IBA57 ENSG00000181873 CDS Human protein_coding chr1:228362896 chr1:228362898 nonsynonymous SNV 0.941 4 23 hm5C_associated_SNPs_56486 0 0 1 0 1 IBA57 chr1:228362823 3'AG 228362823 Downstream 76bp
chr22 25623930 25623930 1 + G T LUAD 25623928 + 25623908 25623948 41 AGCCGAAGGACGGACTCCCTCAGCTCCCTGAGGCCCATCAA AGCCGAAGGACGGACTCCCTCATCTCCCTGAGGCCCATCAA < 41bp 0.788175355498598 0.442407501289787 0.47174734 0.14035088 prediction 0.576350710997197 Functional Loss - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25623928 chr22:25623930 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_56488 0 0 0 0 1 CRYBB2 chr22:25623952 5'GT 25623952 Upstream 23bp
chr2 163204108 163204108 1 + G T SARC 163204106 + 163204086 163204126 41 AGTTTGGAAATTTTAGCATTCAGGTGCCAGGAATGCAGATG AGTTTGGAAATTTTAGCATTCATGTGCCAGGAATGCAGATG < 41bp 0.83748688808275 0.549314279369879 0.5468247 0.19782996 prediction 0.57634521742574 Functional Loss - GCA ENSG00000115271 CDS Human protein_coding chr2:163204106 chr2:163204108 nonsynonymous SNV 0.846 0 23 hm5C_associated_SNPs_56490 0 0 1 0 1 GCA chr2:163204088 3'AG 163204088 Downstream 21bp
chrX 48682631 48682631 1 + G T SARC 48682628 + 48682608 48682648 41 GCTCCAACACCATGGAAATTCTGGACACCCGCTGGTCCTCA GCTCCAACACCATGGAAATTCTGTACACCCGCTGGTCCTCA < 41bp 0.882335270062215 0.594176931759948 0.17023832 0.07765496 prediction 0.576316676604533 Functional Loss - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48682628 chrX:48682631 nonsynonymous SNV 0.908 2 24 hm5C_associated_SNPs_56492 0 0 0 0 2 HDAC6 chrX:48682576 3'AG 48682576 Downstream 56bp
chrX 48682631 48682631 1 + G T SARC 48682628 + 48682608 48682648 41 GCTCCAACACCATGGAAATTCTGGACACCCGCTGGTCCTCA GCTCCAACACCATGGAAATTCTGTACACCCGCTGGTCCTCA < 41bp 0.882335270062215 0.594176931759948 0.17023832 0.07765496 prediction 0.576316676604533 Functional Loss - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48682628 chrX:48682631 nonsynonymous SNV 0.908 2 24 hm5C_associated_SNPs_56492 0 0 0 0 2 HDAC6 chrX:48682704 5'GT 48682704 Upstream 74bp
chr8 90798866 90798866 1 + G T LUSC 90798864 + 90798844 90798884 41 CCATGAAAATAGTGGTTCTCCTGAAACTTCAAGGTCCCTGC CCATGAAAATAGTGGTTCTCCTTAAACTTCAAGGTCCCTGC < 41bp 0.836512185316549 0.548359103550961 0.02148205 0.06808704 prediction 0.576306163531177 Functional Loss - RIPK2 ENSG00000104312 CDS Human protein_coding chr8:90798864 chr8:90798866 stopgain 0.279 0 23 hm5C_associated_SNPs_56493 0 0 1 0 2 RIPK2 chr8:90798821 3'AG 90798821 Downstream 46bp
chr8 90798866 90798866 1 + G T LUSC 90798864 + 90798844 90798884 41 CCATGAAAATAGTGGTTCTCCTGAAACTTCAAGGTCCCTGC CCATGAAAATAGTGGTTCTCCTTAAACTTCAAGGTCCCTGC < 41bp 0.836512185316549 0.548359103550961 0.02148205 0.06808704 prediction 0.576306163531177 Functional Loss - RIPK2 ENSG00000104312 CDS Human protein_coding chr8:90798864 chr8:90798866 stopgain 0.279 0 23 hm5C_associated_SNPs_56493 0 0 1 0 2 RIPK2 chr8:90798914 5'GT 90798914 Upstream 49bp
chr17 63149573 63149573 1 + G T UCEC 63149570 + 63149550 63149590 41 TCGTGAAGGACATGCAGAACCCAGAGACAGGGGTCCGAATG TCGTGAAGGACATGCAGAACCCATAGACAGGGGTCCGAATG < 41bp 0.788149888328879 0.404769520886579 0.3871118 0.04963991 prediction 0.576299776657758 Functional Loss - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63149570 chr17:63149573 stopgain 0.969 1 24 hm5C_associated_SNPs_56494 0 0 0 3 2 RGS9 chr17:63149540 3'AG 63149540 Downstream 34bp
chr17 63149573 63149573 1 + G T UCEC 63149570 + 63149550 63149590 41 TCGTGAAGGACATGCAGAACCCAGAGACAGGGGTCCGAATG TCGTGAAGGACATGCAGAACCCATAGACAGGGGTCCGAATG < 41bp 0.788149888328879 0.404769520886579 0.3871118 0.04963991 prediction 0.576299776657758 Functional Loss - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63149570 chr17:63149573 stopgain 0.969 1 24 hm5C_associated_SNPs_56494 0 0 0 3 2 RGS9 chr17:63149636 5'GT 63149636 Upstream 64bp
chr11 55653690 55653690 1 + G T LUAD 55653688 + 55653668 55653708 41 GAAACCACAAGAACCAGATGCTGGAAGGTTAGTACCGTATG GAAACCACAAGAACCAGATGCTTGAAGGTTAGTACCGTATG < 41bp 0.815075333895671 0.526933634792592 0.65934455 0.2048262 prediction 0.576283398206158 Functional Loss - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55653688 chr11:55653690 nonsynonymous SNV 0.011 0 23 hm5C_associated_SNPs_56496 0 0 0 0 2 TRIM51 chr11:55653599 3'AG 55653599 Downstream 92bp
chr11 55653690 55653690 1 + G T LUAD 55653688 + 55653668 55653708 41 GAAACCACAAGAACCAGATGCTGGAAGGTTAGTACCGTATG GAAACCACAAGAACCAGATGCTTGAAGGTTAGTACCGTATG < 41bp 0.815075333895671 0.526933634792592 0.65934455 0.2048262 prediction 0.576283398206158 Functional Loss - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55653688 chr11:55653690 nonsynonymous SNV 0.011 0 23 hm5C_associated_SNPs_56496 0 0 0 0 2 TRIM51 chr11:55653694 5'GT 55653694 Upstream 5bp
chr10 82331325 82331325 1 + G T UCEC 82331322 + 82331302 82331342 41 GTCCTGGAGGAACGCATCCACGAGGAATTCAAGGTGGGCCA GTCCTGGAGGAACGCATCCACGATGAATTCAAGGTGGGCCA < 41bp 0.898254943477119 0.610116642017923 0.89213496 0.33484107 prediction 0.57627660291839 Functional Loss - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82331322 chr10:82331325 nonsynonymous SNV 0.958 3 24 hm5C_associated_SNPs_56497 0 0 0 0 1 SH2D4B chr10:82331334 5'GT 82331334 Upstream 10bp
chr17 79771415 79771415 1 + G T UCEC 79771413 + 79771393 79771433 41 GCAAAGTGCTATGGGAGGAGCGGAACACCAGCAACCACAGG GCAAAGTGCTATGGGAGGAGCGTAACACCAGCAACCACAGG < 41bp 0.844979013939491 0.556842275517628 0.7981426 0.5251766 prediction 0.576273476843726 Functional Loss - GCGR ENSG00000215644 CDS Human protein_coding chr17:79771413 chr17:79771415 stopgain 0.000 0 23 hm5C_associated_SNPs_56499 0 0 0 0 1 GCGR chr17:79771350 3'AG 79771350 Downstream 66bp
chr12 247572 247572 1 - C A SKCM 247575 - 247555 247595 41 CCTTGCGCAGGGAGATCCGCCGTGGCAGGCGGCTCTCCAGA CCTTGCGCAGGGAGATCCGCCGTTGCAGGCGGCTCTCCAGA < 41bp 0.788136219179856 0.404051895222976 0.74923754 0.19345221 prediction 0.576272438359713 Functional Loss - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:247575 chr12:247572 nonsynonymous SNV 0.960 4 24 hm5C_associated_SNPs_56500 0 0 0 0 1 IQSEC3 chr12:247618 3'AG 247618 Downstream 47bp
chr12 57957931 57957931 1 + G T LUSC 57957928 + 57957908 57957948 41 TCAGCTGATGGGAATCATTCCTCGAATTGCCCGAGACATCT TCAGCTGATGGGAATCATTCCTCTAATTGCCCGAGACATCT < 41bp 0.788120717160058 0.414626358285712 0.50482607 0.8425622 prediction 0.576241434320117 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57957928 chr12:57957931 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_56501 0 0 1 0 2 KIF5A chr12:57957891 3'AG 57957891 Downstream 41bp
chr12 57957931 57957931 1 + G T LUSC 57957928 + 57957908 57957948 41 TCAGCTGATGGGAATCATTCCTCGAATTGCCCGAGACATCT TCAGCTGATGGGAATCATTCCTCTAATTGCCCGAGACATCT < 41bp 0.788120717160058 0.414626358285712 0.50482607 0.8425622 prediction 0.576241434320117 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57957928 chr12:57957931 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_56501 0 0 1 0 2 KIF5A chr12:57957995 5'GT 57957995 Upstream 65bp
chr6 43488504 43488504 1 + A T UCEC 43488500 + 43488480 43488520 41 CACCTGGTGTTATTGAGGTGCAGGAAGTCCAAGGTATGGTA CACCTGGTGTTATTGAGGTGCAGGTAGTCCAAGGTATGGTA < 41bp 0.820066181209865 0.531976644348115 0.8784896 0.35140833 prediction 0.5761790737235 Functional Loss - POLR1C ENSG00000171453 CDS Human protein_coding chr6:43488500 chr6:43488504 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_56506 0 0 1 0 1 POLR1C chr6:43488512 5'GT 43488512 Upstream 9bp
chr17 48245345 48245345 1 + G T LIHC 48245342 + 48245322 48245362 41 TCGGGACAGCTTTGATACCACTCGGCAGAGGCTGGTGCTGG TCGGGACAGCTTTGATACCACTCTGCAGAGGCTGGTGCTGG < 41bp 0.788077890067577 0.398894419949228 0.11286712 0.14590159 prediction 0.576155780135154 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48245342 chr17:48245345 nonsynonymous SNV 0.008 2 24 hm5C_associated_SNPs_56507 0 0 0 4 2 SGCA chr17:48245308 3'AG 48245308 Downstream 38bp
chr17 48245345 48245345 1 + G T LIHC 48245342 + 48245322 48245362 41 TCGGGACAGCTTTGATACCACTCGGCAGAGGCTGGTGCTGG TCGGGACAGCTTTGATACCACTCTGCAGAGGCTGGTGCTGG < 41bp 0.788077890067577 0.398894419949228 0.11286712 0.14590159 prediction 0.576155780135154 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48245342 chr17:48245345 nonsynonymous SNV 0.008 2 24 hm5C_associated_SNPs_56507 0 0 0 4 2 SGCA chr17:48245380 5'GT 48245380 Upstream 36bp
chr9 137967559 137967559 1 + G T LUAD 137967557 + 137967537 137967577 41 GCACCCAGGGCCCTGCATGCCAGGTCGTTGGAGGTGGCAGC GCACCCAGGGCCCTGCATGCCATGTCGTTGGAGGTGGCAGC < 41bp 0.858913393249209 0.570868304488624 0.82677066 0.2866598 prediction 0.576090177521171 Functional Loss - OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137967557 chr9:137967559 nonsynonymous SNV 0.962 3 23 hm5C_associated_SNPs_56509 0 0 0 0 1 OLFM1 chr9:137967648 5'GT 137967648 Upstream 90bp
chr9 93607823 93607823 1 + G T STAD 93607821 + 93607801 93607841 41 GGTTCCATGGAAAAATCTCTCGGGAAGAATCTGAGCAAATT GGTTCCATGGAAAAATCTCTCGTGAAGAATCTGAGCAAATT < 41bp 0.83987289528094 0.551831737097102 0.897804 0.22479379 prediction 0.576082316367674 Functional Loss - SYK ENSG00000165025 CDS Human protein_coding chr9:93607821 chr9:93607823 synonymous SNV . 0 23 hm5C_associated_SNPs_56510 0 0 0 0 1 SYK chr9:93607876 5'GT 93607876 Upstream 54bp
chr13 28367757 28367757 1 + G T UCEC 28367755 + 28367735 28367775 41 AGGATGCGCACGGCTTTCACCAGCACGCAGCTGCTAGAGCT AGGATGCGCACGGCTTTCACCATCACGCAGCTGCTAGAGCT < 41bp 0.834678765890069 0.54663810404073 0.60343045 0.0945926 prediction 0.576081323698678 Functional Loss - GSX1 ENSG00000169840 CDS Human protein_coding chr13:28367755 chr13:28367757 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_56511 0 0 0 0 1 GSX1 chr13:28367703 3'AG 28367703 Downstream 55bp
chr19 11143980 11143980 1 + G T UCEC 11143978 + 11143958 11143998 41 TCCCCCAGGACCTGCAAGCGCAGGACCGAGCCCACCGCATC TCCCCCAGGACCTGCAAGCGCATGACCGAGCCCACCGCATC < 41bp 0.84087297182391 0.552866094425579 0.916018 0.5639201 prediction 0.576013754796662 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11143978 chr19:11143980 nonsynonymous SNV 0.972 4 23 hm5C_associated_SNPs_56514 0 0 1 0 1 SMARCA4 chr19:11143966 3'AG 11143966 Downstream 15bp
chr3 28476711 28476711 1 + G T BLCA 28476708 + 28476688 28476728 41 ATTCCTGGGCGATCCCCATTCAAGATCATGGATAAAGGCAA ATTCCTGGGCGATCCCCATTCAATATCATGGATAAAGGCAA < 41bp 0.871571312455536 0.583571361845667 0.09487435 0.03517711 prediction 0.575999901219737 Functional Loss - ZCWPW2 ENSG00000206559 CDS Human protein_coding chr3:28476708 chr3:28476711 nonsynonymous SNV 0.982 2 24 hm5C_associated_SNPs_56515 0 0 0 0 1 ZCWPW2 chr3:28476760 5'GT 28476760 Upstream 50bp
chr14 65453766 65453766 1 + G T LUSC 65453763 + 65453743 65453783 41 CAGTCTGAGGCCCGAGCACGCGCGAGAGCGGTTGCAGGACG CAGTCTGAGGCCCGAGCACGCGCTAGAGCGGTTGCAGGACG < 41bp 0.879547047169569 0.591562859252071 0.8509506 0.5206818 prediction 0.575968375834996 Functional Loss - FNTB ENSG00000257365 CDS Human protein_coding chr14:65453763 chr14:65453766 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_56518 0 0 0 0 1 FNTB chr14:65453815 5'GT 65453815 Upstream 50bp
chr1 110884828 110884828 1 + A C UCEC 110884824 + 110884804 110884844 41 GTGAGTTCTCCCAGCAGTTCCTGGATTCCCCTGCCAAGGCA GTGAGTTCTCCCAGCAGTTCCTGGCTTCCCCTGCCAAGGCA < 41bp 0.898197323155022 0.610213372487775 0.73192704 0.24410155 prediction 0.575967901334495 Functional Loss - RBM15 ENSG00000162775 CDS Human protein_coding chr1:110884824 chr1:110884828 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_56519 0 0 1 0 1 RBM15 chr1:110884890 5'GT 110884890 Upstream 63bp
chr1 151506567 151506567 1 + G T UCEC 151506564 + 151506544 151506584 41 CTGGAGCAAGAGGCAGAGAACAAGAAGCGTTCCCAGGACGA CTGGAGCAAGAGGCAGAGAACAATAAGCGTTCCCAGGACGA < 41bp 0.787971045621578 0.403257436985728 0.89452773 0.8131502 prediction 0.575942091243155 Functional Loss - CGN ENSG00000143375 CDS Human protein_coding chr1:151506564 chr1:151506567 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_56520 0 0 0 0 1 CGN chr1:151506612 5'GT 151506612 Upstream 46bp
chr20 62853332 62853332 1 + G T LIHC 62853330 + 62853310 62853350 41 ATTTTGAGGAGCGGAAGTATCCGGGGGAAGTCACCCTGACC ATTTTGAGGAGCGGAAGTATCCTGGGGAAGTCACCCTGACC < 41bp 0.787944251435483 0.44302797398315 0.9555718 0.92868483 prediction 0.575888502870965 Functional Loss - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62853330 chr20:62853332 synonymous SNV . 0 23 hm5C_associated_SNPs_56521 0 0 0 0 2 MYT1 chr20:62853246 3'AG 62853246 Downstream 87bp
chr20 62853332 62853332 1 + G T LIHC 62853330 + 62853310 62853350 41 ATTTTGAGGAGCGGAAGTATCCGGGGGAAGTCACCCTGACC ATTTTGAGGAGCGGAAGTATCCTGGGGAAGTCACCCTGACC < 41bp 0.787944251435483 0.44302797398315 0.9555718 0.92868483 prediction 0.575888502870965 Functional Loss - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62853330 chr20:62853332 synonymous SNV . 0 23 hm5C_associated_SNPs_56521 0 0 0 0 2 MYT1 chr20:62853400 5'GT 62853400 Upstream 69bp
chr10 116702425 116702425 1 + A C rs34393297 116702421 + 116702401 116702441 41 TAGAAGCTGGAATGCCTTCTCCAGAATGGACCAAGAGGAAA TAGAAGCTGGAATGCCTTCTCCAGCATGGACCAAGAGGAAA < 41bp 0.787942620792898 0.399637526050316 0.12653953 0.05955261 prediction 0.575885241585795 Functional Loss - TRUB1 ENSG00000165832 CDS Human protein_coding chr10:116702421 chr10:116702425 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_56523 0 0 1 0 2 TRUB1 chr10:116702404 3'AG 116702404 Downstream 22bp
chr10 116702425 116702425 1 + A C rs34393297 116702421 + 116702401 116702441 41 TAGAAGCTGGAATGCCTTCTCCAGAATGGACCAAGAGGAAA TAGAAGCTGGAATGCCTTCTCCAGCATGGACCAAGAGGAAA < 41bp 0.787942620792898 0.399637526050316 0.12653953 0.05955261 prediction 0.575885241585795 Functional Loss - TRUB1 ENSG00000165832 CDS Human protein_coding chr10:116702421 chr10:116702425 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_56523 0 0 1 0 2 TRUB1 chr10:116702502 5'GT 116702502 Upstream 78bp
chr19 19651056 19651056 1 + A T LIHC 19651052 + 19651032 19651072 41 CTGGTTCAACGTGGACCACCCCGGAGGCGACGGCGACTTCG CTGGTTCAACGTGGACCACCCCGGTGGCGACGGCGACTTCG < 41bp 0.793446183076544 0.505508937481498 0.8989021 0.83217084 prediction 0.575874491190091 Functional Loss - CILP2 ENSG00000160161 CDS Human protein_coding chr19:19651052 chr19:19651056 synonymous SNV . 0 25 hm5C_associated_SNPs_56524 0 0 0 0 2 CILP2 chr19:19650995 3'AG 19650995 Downstream 62bp
chr19 19651056 19651056 1 + A T LIHC 19651052 + 19651032 19651072 41 CTGGTTCAACGTGGACCACCCCGGAGGCGACGGCGACTTCG CTGGTTCAACGTGGACCACCCCGGTGGCGACGGCGACTTCG < 41bp 0.793446183076544 0.505508937481498 0.8989021 0.83217084 prediction 0.575874491190091 Functional Loss - CILP2 ENSG00000160161 CDS Human protein_coding chr19:19651052 chr19:19651056 synonymous SNV . 0 25 hm5C_associated_SNPs_56524 0 0 0 0 2 CILP2 chr19:19651013 3'AG 19651013 Downstream 44bp
chr17 34937864 34937864 1 + G T COAD 34937861 + 34937841 34937881 41 AACGAGTAAGAGAACTCAAGCAAGAAAAGAAACGCCAAAAA AACGAGTAAGAGAACTCAAGCAATAAAAGAAACGCCAAAAA < 41bp 0.78793490993213 0.423215156465664 0.63352305 0.1904951 prediction 0.575869819864259 Functional Loss - GGNBP2 ENSG00000005955 CDS Human other chr17:34937861 chr17:34937864 stopgain 0.998 1 24 hm5C_associated_SNPs_56525 0 0 1 0 1 GGNBP2 chr17:34937774 3'AG 34937774 Downstream 91bp
chrX 47444366 47444366 1 + A C rs141614092 47444362 + 47444342 47444382 41 GGCCAAGTTCGTGGGGACACCAGAAGTCAACCAGACCACCT GGCCAAGTTCGTGGGGACACCAGACGTCAACCAGACCACCT < 41bp 0.813740584780559 0.525830214675422 0.60120773 0.39721447 prediction 0.575820740210276 Functional Loss - TIMP1 ENSG00000102265 CDS Human protein_coding chrX:47444362 chrX:47444366 nonsynonymous SNV 0.986 1 25 hm5C_associated_SNPs_56528 0 0 1 0 2 TIMP1 chrX:47444335 3'AG 47444335 Downstream 32bp
chrX 47444366 47444366 1 + A C rs141614092 47444362 + 47444342 47444382 41 GGCCAAGTTCGTGGGGACACCAGAAGTCAACCAGACCACCT GGCCAAGTTCGTGGGGACACCAGACGTCAACCAGACCACCT < 41bp 0.813740584780559 0.525830214675422 0.60120773 0.39721447 prediction 0.575820740210276 Functional Loss - TIMP1 ENSG00000102265 CDS Human protein_coding chrX:47444362 chrX:47444366 nonsynonymous SNV 0.986 1 25 hm5C_associated_SNPs_56528 0 0 1 0 2 TIMP1 chrX:47444414 5'GT 47444414 Upstream 49bp
chrX 140984759 140984759 1 + G T UCEC 140984757 + 140984737 140984777 41 GTCCTCCCAAGATCTCTCCCCAGGGTCCTCCGCAGAGTCCT GTCCTCCCAAGATCTCTCCCCATGGTCCTCCGCAGAGTCCT < 41bp 0.787910287497354 0.429080227536027 0.88258564 0.32183945 prediction 0.575820574994708 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140984757 chrX:140984759 nonsynonymous SNV 0.017 0 23 hm5C_associated_SNPs_56529 0 0 0 0 1 MAGEC3 chrX:140984668 3'AG 140984668 Downstream 92bp
chr18 63430261 63430261 1 + G T LUAD 63430258 + 63430238 63430278 41 TTCTTTGTGCTGGAGGAATACATGGGTTCAGACCCCCTCTA TTCTTTGTGCTGGAGGAATACATTGGTTCAGACCCCCTCTA < 41bp 0.787888626503311 0.405207805975764 0.16469738 0.04880348 prediction 0.575777253006621 Functional Loss - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63430258 chr18:63430261 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_56534 0 0 0 0 1 CDH7 chr18:63430288 5'GT 63430288 Upstream 28bp
chr2 71780251 71780251 1 + G T LUSC 71780248 + 71780228 71780268 41 GAGGTCAGCATCGGGAACTACGGGAACAAGTTCGACATGAC GAGGTCAGCATCGGGAACTACGGTAACAAGTTCGACATGAC < 41bp 0.787877243832443 0.473576218991983 0.77978265 0.20991254 prediction 0.575754487664886 Functional Loss - DYSF ENSG00000135636 CDS Human protein_coding chr2:71780248 chr2:71780251 synonymous SNV . 0 24 hm5C_associated_SNPs_56536 0 0 0 0 1 DYSF chr2:71780318 5'GT 71780318 Upstream 68bp
chr2 87089014 87089014 1 - C A rs531956862 87089017 - 87088997 87089037 41 CGACTGTCTCCGCCGAGCCCCCGGGGCCAGGTGTCCCGGGC CGACTGTCTCCGCCGAGCCCCCGTGGCCAGGTGTCCCGGGC < 41bp 0.825080856066083 0.537227120748711 0.8896991 0.20103455 prediction 0.575707470634743 Functional Loss - ANAPC1P1 ENSG00000172116 UTR5 Human protein_coding chr2:87089017 chr2:87089014 . . 0 24 hm5C_associated_SNPs_56540 0 0 0 0 1 CD8B chr2:87088946 5'GT 87088946 Upstream 69bp
chr7 94139496 94139496 1 + G T CESC 94139493 + 94139473 94139513 41 CGCTGGTGGCCGTGCTGCTGCTCGCAGCGTGCCACCTCGCC CGCTGGTGGCCGTGCTGCTGCTCTCAGCGTGCCACCTCGCC < 41bp 0.78783800241784 0.433855103249054 0.24021378 0.060337037 prediction 0.575676004835681 Functional Loss - CASD1 ENSG00000127995 CDS Human protein_coding chr7:94139493 chr7:94139496 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_56542 0 0 1 0 1 CASD1 chr7:94139529 5'GT 94139529 Upstream 34bp
chr5 102522089 102522089 1 + G T LUAD 102522086 + 102522066 102522106 41 CTTCAAGCGCACCTAACCTACAGGATTATGCTCGTACTCAT CTTCAAGCGCACCTAACCTACAGTATTATGCTCGTACTCAT < 41bp 0.868408909032804 0.58058153949818 0.8862166 0.48707604 prediction 0.575654739069248 Functional Loss - PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102522086 chr5:102522089 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_56546 0 0 1 0 1 PPIP5K2 chr5:102522140 5'GT 102522140 Upstream 52bp
chr4 57861496 57861496 1 + G T MESO 57861493 + 57861473 57861513 41 GGATTCTAAATATGCCTACACAGGAGAGTGTAGATCATGTC GGATTCTAAATATGCCTACACAGTAGAGTGTAGATCATGTC < 41bp 0.787810803376708 0.415567341405904 0.3133545 0.08165389 prediction 0.575621606753416 Functional Loss - POLR2B ENSG00000047315 CDS Human protein_coding chr4:57861493 chr4:57861496 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_56551 0 0 1 0 2 POLR2B chr4:57861417 3'AG 57861417 Downstream 80bp
chr4 57861496 57861496 1 + G T MESO 57861493 + 57861473 57861513 41 GGATTCTAAATATGCCTACACAGGAGAGTGTAGATCATGTC GGATTCTAAATATGCCTACACAGTAGAGTGTAGATCATGTC < 41bp 0.787810803376708 0.415567341405904 0.3133545 0.08165389 prediction 0.575621606753416 Functional Loss - POLR2B ENSG00000047315 CDS Human protein_coding chr4:57861493 chr4:57861496 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_56551 0 0 1 0 2 POLR2B chr4:57861575 5'GT 57861575 Upstream 80bp
chr12 112578769 112578769 1 + G T BLCA 112578767 + 112578747 112578787 41 GCAATGTCCTTGTGAAAGATCTGAAGACTCACCCTGAAGTT GCAATGTCCTTGTGAAAGATCTTAAGACTCACCCTGAAGTT < 41bp 0.787803080545645 0.462364131482519 0.109429 0.027908444 prediction 0.575606161091289 Functional Loss - TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112578767 chr12:112578769 synonymous SNV . 0 23 hm5C_associated_SNPs_56552 0 0 1 1 1 TRAFD1 chr12:112578784 5'GT 112578784 Upstream 16bp
chr9 108397381 108397381 1 + A C GBM 108397377 + 108397357 108397397 41 TGCTGGACTGAGTTTGTAGACATGAAGGTCCATGTACCCTG TGCTGGACTGAGTTTGTAGACATGCAGGTCCATGTACCCTG < 41bp 0.787777064939287 0.413237331761186 0.03571859 0.060240656 prediction 0.575554129878574 Functional Loss - FKTN ENSG00000106692 CDS Human protein_coding chr9:108397377 chr9:108397381 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_56556 0 0 0 0 2 FKTN chr9:108397332 3'AG 108397332 Downstream 50bp
chr9 108397381 108397381 1 + A C GBM 108397377 + 108397357 108397397 41 TGCTGGACTGAGTTTGTAGACATGAAGGTCCATGTACCCTG TGCTGGACTGAGTTTGTAGACATGCAGGTCCATGTACCCTG < 41bp 0.787777064939287 0.413237331761186 0.03571859 0.060240656 prediction 0.575554129878574 Functional Loss - FKTN ENSG00000106692 CDS Human protein_coding chr9:108397377 chr9:108397381 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_56556 0 0 0 0 2 FKTN chr9:108397429 5'GT 108397429 Upstream 49bp
chr19 58288009 58288009 1 + G T SKCM 58288007 + 58287987 58288027 41 GCCTGTACCGTGACGTGATGCTGGAGACCTTGACACTTATA GCCTGTACCGTGACGTGATGCTTGAGACCTTGACACTTATA < 41bp 0.833160130113012 0.54539095759081 0.41287455 0.098661065 prediction 0.575538345044405 Functional Loss - ZNF586 ENSG00000083828 CDS Human protein_coding chr19:58288007 chr19:58288009 synonymous SNV . 0 23 hm5C_associated_SNPs_56557 0 0 1 0 2 ZNF586 chr19:58287911 3'AG 58287911 Downstream 99bp
chr19 58288009 58288009 1 + G T SKCM 58288007 + 58287987 58288027 41 GCCTGTACCGTGACGTGATGCTGGAGACCTTGACACTTATA GCCTGTACCGTGACGTGATGCTTGAGACCTTGACACTTATA < 41bp 0.833160130113012 0.54539095759081 0.41287455 0.098661065 prediction 0.575538345044405 Functional Loss - ZNF586 ENSG00000083828 CDS Human protein_coding chr19:58288007 chr19:58288009 synonymous SNV . 0 23 hm5C_associated_SNPs_56557 0 0 1 0 2 ZNF586 chr19:58288037 5'GT 58288037 Upstream 29bp
chr4 78806491 78806491 1 + G T UCEC 78806489 + 78806469 78806509 41 CAATAAAGTTGCTGTATTTACAGAGGTGAGTAACTTCCGTC CAATAAAGTTGCTGTATTTACATAGGTGAGTAACTTCCGTC < 41bp 0.787768662973996 0.483251422235124 0.9114943 0.33521557 prediction 0.575537325947992 Functional Loss - MRPL1 ENSG00000169288 CDS Human protein_coding chr4:78806489 chr4:78806491 stopgain 0.970 0 23 hm5C_associated_SNPs_56558 0 0 1 0 2 MRPL1 chr4:78806410 3'AG 78806410 Downstream 82bp
chr4 78806491 78806491 1 + G T UCEC 78806489 + 78806469 78806509 41 CAATAAAGTTGCTGTATTTACAGAGGTGAGTAACTTCCGTC CAATAAAGTTGCTGTATTTACATAGGTGAGTAACTTCCGTC < 41bp 0.787768662973996 0.483251422235124 0.9114943 0.33521557 prediction 0.575537325947992 Functional Loss - MRPL1 ENSG00000169288 CDS Human protein_coding chr4:78806489 chr4:78806491 stopgain 0.970 0 23 hm5C_associated_SNPs_56558 0 0 1 0 2 MRPL1 chr4:78806493 5'GT 78806493 Upstream 3bp
chr2 233407995 233407995 1 + G T UCEC 233407993 + 233407973 233408013 41 GGTCATGGATAGCTGGGGGCCAGAAGTGTACCGTCGCCATC GGTCATGGATAGCTGGGGGCCATAAGTGTACCGTCGCCATC < 41bp 0.860195988510222 0.572433171581263 0.818542 0.2876005 prediction 0.575525633857918 Functional Loss - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233407993 chr2:233407995 nonsynonymous SNV 0.919 3 23 hm5C_associated_SNPs_56559 0 0 0 0 1 CHRNG chr2:233407985 3'AG 233407985 Downstream 11bp
chr19 51984828 51984828 1 + G T OV 51984825 + 51984805 51984845 41 GGCAAGACCCTCGTCATCCTCAGGGTCAGCCGCTATGACAG GGCAAGACCCTCGTCATCCTCAGTGTCAGCCGCTATGACAG < 41bp 0.902384283678038 0.614655511716634 0.94745874 0.3098753 prediction 0.575457543922809 Functional Loss - CEACAM18 ENSG00000213822 CDS Human protein_coding chr19:51984825 chr19:51984828 nonsynonymous SNV 0.027 0 24 hm5C_associated_SNPs_56564 0 0 0 0 1 CEACAM18 chr19:51984919 5'GT 51984919 Upstream 92bp
chr15 98509148 98509148 1 + G T UCEC 98509145 + 98509125 98509165 41 ACCTTTGGTCACCTCGTTTACTGGGAAATATGGAAGCATTC ACCTTTGGTCACCTCGTTTACTGTGAAATATGGAAGCATTC < 41bp 0.787718972821284 0.408443218815585 0.33497608 0.088905096 prediction 0.575437945642567 Functional Loss - ARRDC4 ENSG00000140450 CDS Human protein_coding chr15:98509145 chr15:98509148 nonsynonymous SNV 0.969 4 24 hm5C_associated_SNPs_56565 0 0 1 0 1 ARRDC4 chr15:98509125 3'AG 98509125 Downstream 24bp
chr7 127231325 127231325 1 + G T LUSC 127231323 + 127231303 127231343 41 GGTCTGTACGATGGTCTGGACTGGCTGTCCCACGAGCTGTC GGTCTGTACGATGGTCTGGACTTGCTGTCCCACGAGCTGTC < 41bp 0.787663702830137 0.475203629751967 0.41724 0.31606784 prediction 0.575327405660275 Functional Loss - ARF5 ENSG00000004059 CDS Human protein_coding chr7:127231323 chr7:127231325 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_56570 0 0 1 0 1 ARF5 chr7:127231267 3'AG 127231267 Downstream 59bp
chr17 78195377 78195377 1 + G C BLCA 78195376 + 78195356 78195396 41 AGAGATGCCTTCTTCGGTGACGGCGCTGGGTCAGGCCAGGT AGAGATGCCTTCTTCGGTGACCGCGCTGGGTCAGGCCAGGT < 41bp 0.78765245783232 0.491809460793923 0.32474738 0.1226193 prediction 0.575304915664641 Functional Loss - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78195376 chr17:78195377 synonymous SNV . 0 22 hm5C_associated_SNPs_56571 0 0 0 0 1 SLC26A11 chr17:78195347 3'AG 78195347 Downstream 31bp
chr13 25338366 25338366 1 + G T LUSC 25338364 + 25338344 25338384 41 GGCGGCAGAGGCTTCGAAGACTGGGCCTTCTAGGTCTTCCT GGCGGCAGAGGCTTCGAAGACTTGGCCTTCTAGGTCTTCCT < 41bp 0.787650918247295 0.464981283536133 0.14740932 0.020847082 prediction 0.575301836494589 Functional Loss - RNF17 ENSG00000132972 CDS Human protein_coding chr13:25338364 chr13:25338366 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_56572 0 0 0 0 1 RNF17 chr13:25338442 5'GT 25338442 Upstream 77bp
chr6 35280290 35280290 1 + A T LIHC 35280286 + 35280266 35280306 41 TGGCCATCCACGAGGTCTACCAGGAGCTCATCCAAGATGTC TGGCCATCCACGAGGTCTACCAGGTGCTCATCCAAGATGTC < 41bp 0.787637291764823 0.492468579707908 0.9078053 0.91986275 prediction 0.575274583529646 Functional Loss - DEF6 ENSG00000023892 CDS Human protein_coding chr6:35280286 chr6:35280290 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_56574 0 0 1 0 1 DEF6 chr6:35280315 5'GT 35280315 Upstream 26bp
chr5 167850626 167850626 1 + G T LUAD 167850623 + 167850603 167850643 41 GCTCCCTGGTTGCATCCAGCCTGGACTCCTCCACTTCAGCC GCTCCCTGGTTGCATCCAGCCTGTACTCCTCCACTTCAGCC < 41bp 0.787631687417779 0.413193510768476 0.019355386 0.0105268955 prediction 0.575263374835558 Functional Loss - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167850623 chr5:167850626 nonsynonymous SNV 0.965 4 24 hm5C_associated_SNPs_56575 0 0 0 0 1 WWC1 chr5:167850538 3'AG 167850538 Downstream 89bp
chr16 3705910 3705910 1 + G C ACC 3705909 + 3705889 3705929 41 AGAGACAGCCACCTGACTGCCGTGGGGAAGCTGCTGGACAA AGAGACAGCCACCTGACTGCCCTGGGGAAGCTGCTGGACAA < 41bp 0.809484420996495 0.521891662437068 0.8434899 0.25444296 prediction 0.575185517118854 Functional Loss - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3705909 chr16:3705910 nonsynonymous SNV 0.906 1 22 hm5C_associated_SNPs_56578 0 0 1 0 2 DNASE1 chr16:3705850 3'AG 3705850 Downstream 61bp
chr16 3705910 3705910 1 + G C ACC 3705909 + 3705889 3705929 41 AGAGACAGCCACCTGACTGCCGTGGGGAAGCTGCTGGACAA AGAGACAGCCACCTGACTGCCCTGGGGAAGCTGCTGGACAA < 41bp 0.809484420996495 0.521891662437068 0.8434899 0.25444296 prediction 0.575185517118854 Functional Loss - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3705909 chr16:3705910 nonsynonymous SNV 0.906 1 22 hm5C_associated_SNPs_56578 0 0 1 0 2 DNASE1 chr16:3705938 5'GT 3705938 Upstream 29bp
chr11 113803769 113803769 1 + G T UCEC 113803767 + 113803747 113803787 41 CTATCTGTGTCCTCCACATACAGCATCCTGCAGAGCAGCGC CTATCTGTGTCCTCCACATACATCATCCTGCAGAGCAGCGC < 41bp 0.850762009710946 0.563171150674322 0.042280823 0.02794385 prediction 0.575181718073247 Functional Loss - HTR3B ENSG00000149305 CDS Human protein_coding chr11:113803767 chr11:113803769 nonsynonymous SNV 0.091 0 23 hm5C_associated_SNPs_56579 0 0 0 0 1 HTR3B chr11:113803815 5'GT 113803815 Upstream 47bp
chr13 28367191 28367191 1 + A T rs560861673 28367187 + 28367167 28367207 41 GCTGCTGCCGCCGCGCTCTACCAGACCTCCTACCCGCTGCC GCTGCTGCCGCCGCGCTCTACCAGTCCTCCTACCCGCTGCC < 41bp 0.787572179376663 0.498381611630315 0.40487725 0.076862454 prediction 0.575144358753326 Functional Loss - GSX1 ENSG00000169840 CDS Human protein_coding chr13:28367187 chr13:28367191 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_56580 0 0 0 0 1 GSX1 chr13:28367239 5'GT 28367239 Upstream 49bp
chr12 51354815 51354815 1 + G T UCEC 51354813 + 51354793 51354833 41 AGCTAAAGTACAGAAGAGATCAGAAAATGTCAATTCATCTT AGCTAAAGTACAGAAGAGATCATAAAATGTCAATTCATCTT < 41bp 0.836483956823526 0.548916814663746 0.10535073 0.04472235 prediction 0.57513428431956 Functional Loss - HIGD1C ENSG00000214511 CDS Human protein_coding chr12:51354813 chr12:51354815 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_56581 0 0 0 0 2 HIGD1C chr12:51354751 3'AG 51354751 Downstream 65bp
chr12 51354815 51354815 1 + G T UCEC 51354813 + 51354793 51354833 41 AGCTAAAGTACAGAAGAGATCAGAAAATGTCAATTCATCTT AGCTAAAGTACAGAAGAGATCATAAAATGTCAATTCATCTT < 41bp 0.836483956823526 0.548916814663746 0.10535073 0.04472235 prediction 0.57513428431956 Functional Loss - HIGD1C ENSG00000214511 CDS Human protein_coding chr12:51354813 chr12:51354815 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_56581 0 0 0 0 2 HIGD1C chr12:51354885 5'GT 51354885 Upstream 71bp
chr19 10794426 10794426 1 + G T LGG 10794423 + 10794403 10794443 41 TCCGGGGACGAGGGCGCGGGCGAGGATTTGGTGGCGCCAAC TCCGGGGACGAGGGCGCGGGCGATGATTTGGTGGCGCCAAC < 41bp 0.892538399385028 0.604984336038738 0.90236163 0.8195517 prediction 0.575108126692581 Functional Loss - ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794423 chr19:10794426 stopgain 0.963 1 24 hm5C_associated_SNPs_56584 0 0 1 0 1 ILF3 chr19:10794465 5'GT 10794465 Upstream 40bp
chr5 139752424 139752424 1 + A C rs369718250 139752420 + 139752400 139752440 41 GGAGTGGAGACCCCAGGAAACAGCATGAGGTGAGGGTGTGA GGAGTGGAGACCCCAGGAAACAGCCTGAGGTGAGGGTGTGA < 41bp 0.787547246740849 0.390145040782458 0.12292701 0.16051781 prediction 0.575094493481698 Functional Loss - SLC4A9 ENSG00000249637 ncRNA_intronic Human protein_coding chr5:139752420 chr5:139752424 . . 0 25 hm5C_associated_SNPs_56585 0 0 0 0 2 SLC4A9 chr5:139752330 3'AG 139752330 Downstream 95bp
chr5 139752424 139752424 1 + A C rs369718250 139752420 + 139752400 139752440 41 GGAGTGGAGACCCCAGGAAACAGCATGAGGTGAGGGTGTGA GGAGTGGAGACCCCAGGAAACAGCCTGAGGTGAGGGTGTGA < 41bp 0.787547246740849 0.390145040782458 0.12292701 0.16051781 prediction 0.575094493481698 Functional Loss - SLC4A9 ENSG00000249637 ncRNA_intronic Human antisense chr5:139752420 chr5:139752424 . . 0 25 hm5C_associated_SNPs_56585 0 0 0 0 2 SLC4A9 chr5:139752428 5'GT 139752428 Upstream 5bp
chr2 101188144 101188144 1 + G T LUSC 101188142 + 101188122 101188162 41 ATCAAAGCCATTTCAACAACCTGCATACCCAATTATCCTGA ATCAAAGCCATTTCAACAACCTTCATACCCAATTATCCTGA < 41bp 0.787542747888683 0.481847841045956 0.06222844 0.19453862 prediction 0.575085495777366 Functional Loss - PDCL3 ENSG00000115539 CDS Human protein_coding chr2:101188142 chr2:101188144 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_56586 0 0 0 0 1 PDCL3 chr2:101188052 3'AG 101188052 Downstream 93bp
chr8 95655613 95655613 1 + G T CESC 95655611 + 95655591 95655631 41 ACTGATGGGCAGCTTCATGTCAGGCAAATCCTGCATCCTGA ACTGATGGGCAGCTTCATGTCATGCAAATCCTGCATCCTGA < 41bp 0.787542015047613 0.4504179606944 0.6401806 0.15735662 prediction 0.575084030095226 Functional Loss - ESRP1 ENSG00000104413 CDS Human protein_coding chr8:95655611 chr8:95655613 nonsynonymous SNV 0.979 4 23 hm5C_associated_SNPs_56587 0 0 1 0 2 ESRP1 chr8:95655531 3'AG 95655531 Downstream 83bp
chr8 95655613 95655613 1 + G T CESC 95655611 + 95655591 95655631 41 ACTGATGGGCAGCTTCATGTCAGGCAAATCCTGCATCCTGA ACTGATGGGCAGCTTCATGTCATGCAAATCCTGCATCCTGA < 41bp 0.787542015047613 0.4504179606944 0.6401806 0.15735662 prediction 0.575084030095226 Functional Loss - ESRP1 ENSG00000104413 CDS Human protein_coding chr8:95655611 chr8:95655613 nonsynonymous SNV 0.979 4 23 hm5C_associated_SNPs_56587 0 0 1 0 2 ESRP1 chr8:95655644 5'GT 95655644 Upstream 32bp
chr5 639251 639251 1 + G T LUAD 639249 + 639229 639269 41 TACCCGGGAAGAAGACGGCCCTGCAGGCGGCGCTCCTGGAG TACCCGGGAAGAAGACGGCCCTTCAGGCGGCGCTCCTGGAG < 41bp 0.837942176536212 0.550400838492596 0.28794122 0.3763059 prediction 0.575082676087232 Functional Loss - CEP72 ENSG00000112877 CDS Human protein_coding chr5:639249 chr5:639251 synonymous SNV . 0 23 hm5C_associated_SNPs_56588 0 0 0 0 1 CEP72 chr5:639204 3'AG 639204 Downstream 48bp
chr10 111967743 111967743 1 + G T UCEC 111967740 + 111967720 111967760 41 TCAGACATTTTCAACACCAGCGAGAACTCGATGGAGAAGCA TCAGACATTTTCAACACCAGCGATAACTCGATGGAGAAGCA < 41bp 0.787523079098986 0.417432542738052 0.35579655 0.31009036 prediction 0.575046158197972 Functional Loss - MXI1 ENSG00000119950 CDS Human protein_coding chr10:111967740 chr10:111967743 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_56590 0 0 1 0 1 MXI1 chr10:111967840 5'GT 111967840 Upstream 98bp
chr19 36348266 36348266 1 + G T LUAD 36348264 + 36348244 36348284 41 TAGGCCCGTCGCCCCATTTCCTGCAACAGCCAGAGGACCTG TAGGCCCGTCGCCCCATTTCCTTCAACAGCCAGAGGACCTG < 41bp 0.854759301727961 0.567237743416418 0.11606568 0.038770765 prediction 0.575043116623084 Functional Loss - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36348264 chr19:36348266 synonymous SNV . 0 23 hm5C_associated_SNPs_56591 0 0 0 0 1 KIRREL2 chr19:36348247 3'AG 36348247 Downstream 20bp
chr12 69993777 69993777 1 + G T BLCA 69993775 + 69993755 69993795 41 TGTGGACAACATCATCAAAGCGGCACCCAGGTACCCTAACA TGTGGACAACATCATCAAAGCGTCACCCAGGTACCCTAACA < 41bp 0.787497977856318 0.474848060756726 0.078989685 0.02050975 prediction 0.574995955712637 Functional Loss - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69993775 chr12:69993777 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_56595 0 0 1 0 1 CCT2 chr12:69993784 5'GT 69993784 Upstream 8bp
chr11 125221252 125221252 1 + G T UCEC 125221250 + 125221230 125221270 41 CTCTGACGATGATGGCCACGCAGAATGTCCCGCCCCCACCC CTCTGACGATGATGGCCACGCATAATGTCCCGCCCCCACCC < 41bp 0.858566059860199 0.571071103174452 0.86506546 0.29173055 prediction 0.574989913371494 Functional Loss - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125221250 chr11:125221252 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_56596 0 0 0 0 2 PKNOX2 chr11:125221180 3'AG 125221180 Downstream 73bp
chr11 125221252 125221252 1 + G T UCEC 125221250 + 125221230 125221270 41 CTCTGACGATGATGGCCACGCAGAATGTCCCGCCCCCACCC CTCTGACGATGATGGCCACGCATAATGTCCCGCCCCCACCC < 41bp 0.858566059860199 0.571071103174452 0.86506546 0.29173055 prediction 0.574989913371494 Functional Loss - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125221250 chr11:125221252 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_56596 0 0 0 0 2 PKNOX2 chr11:125221288 5'GT 125221288 Upstream 37bp
chr1 118472382 118472382 1 + G T rs115881551 118472380 + 118472360 118472400 41 GTCTTGTGGGCGGGTCCAATCGGCTGGGAGCCTCGTGGAGG GTCTTGTGGGCGGGTCCAATCGTCTGGGAGCCTCGTGGAGG < 41bp 0.840664628062205 0.553182449364775 0.89346236 0.47902745 prediction 0.57496435739486 Functional Loss - WDR3 ENSG00000065183 UTR5 Human protein_coding chr1:118472380 chr1:118472382 . . 0 23 hm5C_associated_SNPs_56597 0 0 1 0 1 WDR3 chr1:118472405 5'GT 118472405 Upstream 24bp
chr11 65687863 65687863 1 + G T LUAD 65687860 + 65687840 65687880 41 AGTTTGACTTCTTGAAGGACCTGGTGGCATCTGTTCCCGAC AGTTTGACTTCTTGAAGGACCTGTTGGCATCTGTTCCCGAC < 41bp 0.787481650967258 0.407907157678887 0.24679843 0.04075539 prediction 0.574963301934517 Functional Loss - DRAP1 ENSG00000175550 CDS Human protein_coding chr11:65687860 chr11:65687863 nonsynonymous SNV 0.966 4 24 hm5C_associated_SNPs_56598 0 0 1 0 2 DRAP1 chr11:65687814 3'AG 65687814 Downstream 50bp
chr11 65687863 65687863 1 + G T LUAD 65687860 + 65687840 65687880 41 AGTTTGACTTCTTGAAGGACCTGGTGGCATCTGTTCCCGAC AGTTTGACTTCTTGAAGGACCTGTTGGCATCTGTTCCCGAC < 41bp 0.787481650967258 0.407907157678887 0.24679843 0.04075539 prediction 0.574963301934517 Functional Loss - DRAP1 ENSG00000175550 CDS Human protein_coding chr11:65687860 chr11:65687863 nonsynonymous SNV 0.966 4 24 hm5C_associated_SNPs_56598 0 0 1 0 2 DRAP1 chr11:65687933 5'GT 65687933 Upstream 71bp
chr4 120085496 120085496 1 + A C COAD 120085492 + 120085472 120085512 41 GCTTTTAGAGGCTTTATATCCTAAACTTTTCAAGCCTGAAG GCTTTTAGAGGCTTTATATCCTAACCTTTTCAAGCCTGAAG < 41bp 0.787480011180698 0.391133227803587 0.039014667 0.05222875 prediction 0.574960022361396 Functional Loss - MYOZ2 ENSG00000172399 CDS Human protein_coding chr4:120085492 chr4:120085496 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_56599 0 0 0 0 1 MYOZ2 chr4:120085549 5'GT 120085549 Upstream 54bp
chr5 156668718 156668718 1 + G T STAD 156668716 + 156668696 156668736 41 GCAGAAAGCCCCAGTTACAGCAGGGCTGAGATACGGTGAGC GCAGAAAGCCCCAGTTACAGCATGGCTGAGATACGGTGAGC < 41bp 0.860687019022268 0.573207694053941 0.90002644 0.36251324 prediction 0.574958649936653 Functional Loss - ITK ENSG00000113263 CDS Human protein_coding chr5:156668716 chr5:156668718 nonsynonymous SNV 0.284 2 23 hm5C_associated_SNPs_56600 0 0 0 0 2 ITK chr5:156668656 3'AG 156668656 Downstream 63bp
chr5 156668718 156668718 1 + G T STAD 156668716 + 156668696 156668736 41 GCAGAAAGCCCCAGTTACAGCAGGGCTGAGATACGGTGAGC GCAGAAAGCCCCAGTTACAGCATGGCTGAGATACGGTGAGC < 41bp 0.860687019022268 0.573207694053941 0.90002644 0.36251324 prediction 0.574958649936653 Functional Loss - ITK ENSG00000113263 CDS Human protein_coding chr5:156668716 chr5:156668718 nonsynonymous SNV 0.284 2 23 hm5C_associated_SNPs_56600 0 0 0 0 2 ITK chr5:156668730 5'GT 156668730 Upstream 13bp
chr12 111291361 111291361 1 + G T BLCA 111291359 + 111291339 111291379 41 CTTTTAAGTTCCGAAACCAGCAGAAGATTGCGAGTCAGTAG CTTTTAAGTTCCGAAACCAGCATAAGATTGCGAGTCAGTAG < 41bp 0.787448768392407 0.45173679998189 0.55928314 0.16381696 prediction 0.574897536784814 Functional Loss - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111291359 chr12:111291361 nonsynonymous SNV 0.036 0 23 hm5C_associated_SNPs_56604 0 0 0 0 1 CCDC63 chr12:111291378 5'GT 111291378 Upstream 18bp
chr8 2037890 2037890 1 + G C BLCA 2037889 + 2037869 2037909 41 CCAGACGGCTGTGAGATCCCCGAGATATGCCGTGTTTGACC CCAGACGGCTGTGAGATCCCCCAGATATGCCGTGTTTGACC < 41bp 0.78744063304491 0.479684979730965 0.3832142 0.06586522 prediction 0.57488126608982 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2037889 chr8:2037890 synonymous SNV . 0 22 hm5C_associated_SNPs_56605 0 0 0 0 1 MYOM2 chr8:2037831 3'AG 2037831 Downstream 60bp
chr14 23354194 23354194 1 + G T UCEC 23354191 + 23354171 23354211 41 CAGGCACTTTTGGTGGTCTCCAGGGAGACAGTGCTCACGAA CAGGCACTTTTGGTGGTCTCCAGTGAGACAGTGCTCACGAA < 41bp 0.897247782987672 0.609827948606401 0.93270063 0.73129654 prediction 0.574839668762542 Functional Loss - REM2 ENSG00000139890 CDS Human protein_coding chr14:23354191 chr14:23354194 stopgain 0.994 1 24 hm5C_associated_SNPs_56607 0 0 0 0 1 REM2 chr14:23354224 5'GT 23354224 Upstream 31bp
chr1 160388876 160388876 1 + A T LUAD 160388872 + 160388852 160388892 41 CATGATGACCTCACACGCATCGCCAAGGACATGGAGGACAG CATGATGACCTCACACGCATCGCCTAGGACATGGAGGACAG < 41bp 0.856682965000592 0.569275560025168 0.2532302 0.013081193 prediction 0.574814809950849 Functional Loss - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160388872 chr1:160388876 stopgain 1.000 1 25 hm5C_associated_SNPs_56608 0 0 0 0 1 VANGL2 chr1:160388792 3'AG 160388792 Downstream 85bp
chr2 234102591 234102591 1 + G C BLCA 234102590 + 234102570 234102610 41 GCAGACCTCTCAGGGCAAGACGAGGGAGAAGCTCTATGGTA GCAGACCTCTCAGGGCAAGACCAGGGAGAAGCTCTATGGTA < 41bp 0.787405028301646 0.494346101636335 0.498419 0.38971448 prediction 0.574810056603292 Functional Loss - INPP5D ENSG00000168918 CDS Human protein_coding chr2:234102590 chr2:234102591 synonymous SNV . 0 22 hm5C_associated_SNPs_56611 0 0 1 0 1 INPP5D chr2:234102607 5'GT 234102607 Upstream 17bp
chr1 161680614 161680614 1 + G T UCEC 161680611 + 161680591 161680631 41 ACTGAGGAGAGCAGCTGCCACACGGAGGATGACTTGACTGA ACTGAGGAGAGCAGCTGCCACACTGAGGATGACTTGACTGA < 41bp 0.787393907023217 0.440018352481394 0.6191334 0.14188385 prediction 0.574787814046434 Functional Loss - FCRLA ENSG00000132185 CDS Human protein_coding chr1:161680611 chr1:161680614 synonymous SNV . 0 24 hm5C_associated_SNPs_56614 0 0 0 0 2 FCRLA chr1:161680550 3'AG 161680550 Downstream 65bp
chr1 161680614 161680614 1 + G T UCEC 161680611 + 161680591 161680631 41 ACTGAGGAGAGCAGCTGCCACACGGAGGATGACTTGACTGA ACTGAGGAGAGCAGCTGCCACACTGAGGATGACTTGACTGA < 41bp 0.787393907023217 0.440018352481394 0.6191334 0.14188385 prediction 0.574787814046434 Functional Loss - FCRLA ENSG00000132185 CDS Human protein_coding chr1:161680611 chr1:161680614 synonymous SNV . 0 24 hm5C_associated_SNPs_56614 0 0 0 0 2 FCRLA chr1:161680702 5'GT 161680702 Upstream 89bp
chr12 122369704 122369704 1 + G C CESC 122369703 + 122369683 122369723 41 CTCTTCCTGTTTACTATATTCGAGAGGAAAGGCAGAGAGTT CTCTTCCTGTTTACTATATTCCAGAGGAAAGGCAGAGAGTT < 41bp 0.787391141940948 0.481773008544166 0.61811185 0.35678142 prediction 0.574782283881897 Functional Loss - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122369703 chr12:122369704 nonsynonymous SNV 0.883 0 22 hm5C_associated_SNPs_56615 0 0 0 0 2 WDR66 chr12:122369652 3'AG 122369652 Downstream 53bp
chr12 122369704 122369704 1 + G C CESC 122369703 + 122369683 122369723 41 CTCTTCCTGTTTACTATATTCGAGAGGAAAGGCAGAGAGTT CTCTTCCTGTTTACTATATTCCAGAGGAAAGGCAGAGAGTT < 41bp 0.787391141940948 0.481773008544166 0.61811185 0.35678142 prediction 0.574782283881897 Functional Loss - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122369703 chr12:122369704 nonsynonymous SNV 0.883 0 22 hm5C_associated_SNPs_56615 0 0 0 0 2 WDR66 chr12:122369792 5'GT 122369792 Upstream 89bp
chr11 117153552 117153552 1 + G T GBM 117153550 + 117153530 117153570 41 TTCTGCCCAAGTTTCATATCCTGGAAGGTCTTCACATGTAA TTCTGCCCAAGTTTCATATCCTTGAAGGTCTTCACATGTAA < 41bp 0.787387987490513 0.475148039235367 0.2165876 0.061878443 prediction 0.574775974981026 Functional Loss - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117153550 chr11:117153552 stopgain 1.000 1 23 hm5C_associated_SNPs_56616 0 0 1 0 2 RNF214 chr11:117153462 3'AG 117153462 Downstream 91bp
chr11 117153552 117153552 1 + G T GBM 117153550 + 117153530 117153570 41 TTCTGCCCAAGTTTCATATCCTGGAAGGTCTTCACATGTAA TTCTGCCCAAGTTTCATATCCTTGAAGGTCTTCACATGTAA < 41bp 0.787387987490513 0.475148039235367 0.2165876 0.061878443 prediction 0.574775974981026 Functional Loss - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117153550 chr11:117153552 stopgain 1.000 1 23 hm5C_associated_SNPs_56616 0 0 1 0 2 RNF214 chr11:117153566 5'GT 117153566 Upstream 15bp
chr1 154247910 154247910 1 + G T LUAD 154247907 + 154247887 154247927 41 ACTGTGGTGGACAGTGAGGGCCGGACAGAGACTACAGTAAC ACTGTGGTGGACAGTGAGGGCCGTACAGAGACTACAGTAAC < 41bp 0.787382689502 0.423670241703515 0.109314114 0.056239367 prediction 0.574765379003999 Functional Loss - HAX1 ENSG00000143575 CDS Human protein_coding chr1:154247907 chr1:154247910 synonymous SNV . 0 24 hm5C_associated_SNPs_56617 0 0 1 0 2 HAX1 chr1:154247869 3'AG 154247869 Downstream 42bp
chr1 154247910 154247910 1 + G T LUAD 154247907 + 154247887 154247927 41 ACTGTGGTGGACAGTGAGGGCCGGACAGAGACTACAGTAAC ACTGTGGTGGACAGTGAGGGCCGTACAGAGACTACAGTAAC < 41bp 0.787382689502 0.423670241703515 0.109314114 0.056239367 prediction 0.574765379003999 Functional Loss - HAX1 ENSG00000143575 CDS Human protein_coding chr1:154247907 chr1:154247910 synonymous SNV . 0 24 hm5C_associated_SNPs_56617 0 0 1 0 2 HAX1 chr1:154247959 5'GT 154247959 Upstream 50bp
chr17 41001160 41001160 1 + G T LUSC 41001158 + 41001138 41001178 41 TTTAAACCTGTGGCTGCCCCCTGGAACCCGGAGCACTGGCT TTTAAACCTGTGGCTGCCCCCTTGAACCCGGAGCACTGGCT < 41bp 0.842326761494301 0.55494688171162 0.35322604 0.1138871 prediction 0.574759759565362 Functional Loss - AOC2 ENSG00000131480 CDS Human protein_coding chr17:41001158 chr17:41001160 nonsynonymous SNV 0.497 4 23 hm5C_associated_SNPs_56618 0 0 1 0 1 AOC2 chr17:41001103 3'AG 41001103 Downstream 58bp
chrX 142113830 142113830 1 + G T BLCA 142113827 + 142113807 142113847 41 GAGCCAACTTCCAGCACCAACGAGAATAAAATGAAGAGCCC GAGCCAACTTCCAGCACCAACGATAATAAAATGAAGAGCCC < 41bp 0.872693598802087 0.585340961715238 0.36830077 0.79620373 prediction 0.574705274173697 Functional Loss - SPANXN4 ENSG00000189326 CDS Human protein_coding chrX:142113827 chrX:142113830 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_56619 0 0 0 0 1 SPANXN4 chrX:142113878 5'GT 142113878 Upstream 49bp
chr15 76630847 76630847 1 + A C rs575998550 76630843 + 76630823 76630863 41 CGCTTCCCGGCGCCCGCGGCCTGCATCTGCCCGGTAAGCGC CGCTTCCCGGCGCCCGCGGCCTGCCTCTGCCCGGTAAGCGC < 41bp 0.889026747470645 0.601685163265851 0.30441234 0.10023481 prediction 0.574683168409588 Functional Loss - ISL2 ENSG00000159556 CDS Human protein_coding chr15:76630843 chr15:76630847 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_56620 0 0 1 0 1 ISL2 chr15:76630855 5'GT 76630855 Upstream 9bp
chr19 56005988 56005988 1 + G T COAD 56005985 + 56005965 56006005 41 CCTGCTCCACAGGCATGCCCCTGGGCTACGTCCCTCCCACG CCTGCTCCACAGGCATGCCCCTGTGCTACGTCCCTCCCACG < 41bp 0.787309364738103 0.3920478531708 0.91536236 0.181297 prediction 0.574618729476206 Functional Loss - SSC5D ENSG00000179954 CDS Human protein_coding chr19:56005985 chr19:56005988 nonsynonymous SNV 0.020 3 24 hm5C_associated_SNPs_56625 0 0 0 0 1 SSC5D chr19:56005977 3'AG 56005977 Downstream 12bp
chr9 139888114 139888114 1 + G T UCEC 139888111 + 139888091 139888131 41 TCGCTCATCAACCCCGGGTTCAAGAGGTACCCTCCCACAGC TCGCTCATCAACCCCGGGTTCAATAGGTACCCTCCCACAGC < 41bp 0.891934885659679 0.604628484312454 0.9246479 0.29558873 prediction 0.574612802694451 Functional Loss - C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139888111 chr9:139888114 nonsynonymous SNV 0.975 4 24 hm5C_associated_SNPs_56626 0 0 1 0 2 C9orf142 chr9:139888032 3'AG 139888032 Downstream 83bp
chr9 139888114 139888114 1 + G T UCEC 139888111 + 139888091 139888131 41 TCGCTCATCAACCCCGGGTTCAAGAGGTACCCTCCCACAGC TCGCTCATCAACCCCGGGTTCAATAGGTACCCTCCCACAGC < 41bp 0.891934885659679 0.604628484312454 0.9246479 0.29558873 prediction 0.574612802694451 Functional Loss - C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139888111 chr9:139888114 nonsynonymous SNV 0.975 4 24 hm5C_associated_SNPs_56626 0 0 1 0 2 C9orf142 chr9:139888116 5'GT 139888116 Upstream 3bp
chrX 18775789 18775789 1 + G T UCEC 18775786 + 18775766 18775806 41 TTAGAGGTGCTATTTGAAACCAAGAAAGTCCTGAAGCAAAT TTAGAGGTGCTATTTGAAACCAATAAAGTCCTGAAGCAAAT < 41bp 0.78730369501795 0.418127011749426 0.06413835 0.066415936 prediction 0.5746073900359 Functional Loss - PPEF1 ENSG00000086717 CDS Human protein_coding chrX:18775786 chrX:18775789 nonsynonymous SNV 0.656 0 24 hm5C_associated_SNPs_56628 0 0 0 0 2 PPEF1 chrX:18775745 3'AG 18775745 Downstream 45bp
chrX 18775789 18775789 1 + G T UCEC 18775786 + 18775766 18775806 41 TTAGAGGTGCTATTTGAAACCAAGAAAGTCCTGAAGCAAAT TTAGAGGTGCTATTTGAAACCAATAAAGTCCTGAAGCAAAT < 41bp 0.78730369501795 0.418127011749426 0.06413835 0.066415936 prediction 0.5746073900359 Functional Loss - PPEF1 ENSG00000086717 CDS Human protein_coding chrX:18775786 chrX:18775789 nonsynonymous SNV 0.656 0 24 hm5C_associated_SNPs_56628 0 0 0 0 2 PPEF1 chrX:18775859 5'GT 18775859 Upstream 71bp
chr19 15769171 15769171 1 + G T UCEC 15769168 + 15769148 15769188 41 CCGTCTCTCGCTGCTGCACCCAAGACATTGTGCTCCCAGAC CCGTCTCTCGCTGCTGCACCCAATACATTGTGCTCCCAGAC < 41bp 0.898276796515802 0.611031454310233 0.31229255 0.07644886 prediction 0.574490684411138 Functional Loss - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15769168 chr19:15769171 nonsynonymous SNV 0.962 3 24 hm5C_associated_SNPs_56634 0 0 0 0 2 CYP4F3 chr19:15769074 3'AG 15769074 Downstream 98bp
chr19 15769171 15769171 1 + G T UCEC 15769168 + 15769148 15769188 41 CCGTCTCTCGCTGCTGCACCCAAGACATTGTGCTCCCAGAC CCGTCTCTCGCTGCTGCACCCAATACATTGTGCTCCCAGAC < 41bp 0.898276796515802 0.611031454310233 0.31229255 0.07644886 prediction 0.574490684411138 Functional Loss - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15769168 chr19:15769171 nonsynonymous SNV 0.962 3 24 hm5C_associated_SNPs_56634 0 0 0 0 2 CYP4F3 chr19:15769207 5'GT 15769207 Upstream 37bp
chr1 158326593 158326593 1 + G T COAD 158326590 + 158326570 158326610 41 GGAGCCAACACTCAGGACACCAAGAATTCAAGACATCAGTT GGAGCCAACACTCAGGACACCAATAATTCAAGACATCAGTT < 41bp 0.787228050784457 0.469481901259454 0.26005566 0.16808563 prediction 0.574456101568915 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158326590 chr1:158326593 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_56636 0 0 0 1 2 CD1E chr1:158326518 3'AG 158326518 Downstream 76bp
chr1 158326593 158326593 1 + G T COAD 158326590 + 158326570 158326610 41 GGAGCCAACACTCAGGACACCAAGAATTCAAGACATCAGTT GGAGCCAACACTCAGGACACCAATAATTCAAGACATCAGTT < 41bp 0.787228050784457 0.469481901259454 0.26005566 0.16808563 prediction 0.574456101568915 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158326590 chr1:158326593 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_56636 0 0 0 1 2 CD1E chr1:158326554 3'AG 158326554 Downstream 40bp
chr4 187209686 187209686 1 + G T SKCM 187209684 + 187209664 187209704 41 ATCACGAGCTGGGGCGAAGGCTGTGCTCAAAGGGAGCGGCC ATCACGAGCTGGGGCGAAGGCTTTGCTCAAAGGGAGCGGCC < 41bp 0.787178971452919 0.460985592094845 0.04959792 0.018313825 prediction 0.574357942905838 Functional Loss - F11 ENSG00000088926 CDS Human protein_coding chr4:187209684 chr4:187209686 nonsynonymous SNV 0.986 5 23 hm5C_associated_SNPs_56641 0 0 1 0 1 F11 chr4:187209607 3'AG 187209607 Downstream 80bp
chr16 54966496 54966496 1 + G T LUAD 54966493 + 54966473 54966513 41 CCCCTGGGATCGTACCCTTACGGGGACCCAGCGTACCGGAA CCCCTGGGATCGTACCCTTACGGTGACCCAGCGTACCGGAA < 41bp 0.897998277844777 0.610834197110331 0.9400749 0.63329685 prediction 0.574328161468892 Functional Loss - IRX5 ENSG00000176842 CDS Human protein_coding chr16:54966493 chr16:54966496 synonymous SNV . 0 24 hm5C_associated_SNPs_56644 0 0 0 0 1 IRX5 chr16:54966410 3'AG 54966410 Downstream 87bp
chr8 49986691 49986691 1 + G T UCEC 49986689 + 49986669 49986709 41 TCATAGATGACGACAAACCACAGCAAGGTACTTAGTTATTT TCATAGATGACGACAAACCACATCAAGGTACTTAGTTATTT < 41bp 0.787153008589617 0.498471781078391 0.04468456 0.019794434 prediction 0.574306017179234 Functional Loss - C8orf22 ENSG00000168333 CDS Human protein_coding chr8:49986689 chr8:49986691 nonsynonymous SNV 0.823 0 23 hm5C_associated_SNPs_56645 0 0 0 0 1 C8orf22 chr8:49986695 5'GT 49986695 Upstream 5bp
chr5 40843768 40843768 1 + A C GBM 40843764 + 40843744 40843784 41 AGAACCAAGTTATGAGGGATCAGAAACCAGCCTTTCATTGG AGAACCAAGTTATGAGGGATCAGACACCAGCCTTTCATTGG < 41bp 0.787148513855691 0.399070185433383 0.43352497 0.27103373 prediction 0.574297027711383 Functional Loss - CARD6 ENSG00000132357 CDS Human protein_coding chr5:40843764 chr5:40843768 nonsynonymous SNV 0.003 1 25 hm5C_associated_SNPs_56648 0 0 0 0 1 CARD6 chr5:40843811 5'GT 40843811 Upstream 44bp
chr8 11660353 11660353 1 + G T UCEC 11660350 + 11660330 11660370 41 GCCTGCGCCAGGATGGAGTTCGTGAAATGCCTTGGCCACCC GCCTGCGCCAGGATGGAGTTCGTTAAATGCCTTGGCCACCC < 41bp 0.870699463637445 0.583556952420297 0.89955485 0.5722013 prediction 0.574285022434297 Functional Loss - FDFT1 ENSG00000079459 CDS Human protein_coding chr8:11660350 chr8:11660353 synonymous SNV . 0 24 hm5C_associated_SNPs_56649 0 0 1 0 2 FDFT1 chr8:11660419 5'GT 11660419 Upstream 67bp
chr8 11660353 11660353 1 + G T UCEC 11660350 + 11660330 11660370 41 GCCTGCGCCAGGATGGAGTTCGTGAAATGCCTTGGCCACCC GCCTGCGCCAGGATGGAGTTCGTTAAATGCCTTGGCCACCC < 41bp 0.870699463637445 0.583556952420297 0.89955485 0.5722013 prediction 0.574285022434297 Functional Loss - FDFT1 ENSG00000079459 CDS Human protein_coding chr8:11660350 chr8:11660353 synonymous SNV . 0 24 hm5C_associated_SNPs_56649 0 0 1 0 2 FDFT1 chr8:11660440 5'GT 11660440 Upstream 88bp
chrX 128879233 128879233 1 + G T LGG 128879231 + 128879211 128879251 41 TGCGTGGATTACAGGCTTTACAGGGTCTGCAGGTGACAATC TGCGTGGATTACAGGCTTTACATGGTCTGCAGGTGACAATC < 41bp 0.865027364841943 0.577885405379104 0.85879415 0.31685117 prediction 0.574283918925679 Functional Loss - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128879231 chrX:128879233 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_56650 0 0 0 0 2 XPNPEP2 chrX:128879179 3'AG 128879179 Downstream 55bp
chrX 128879233 128879233 1 + G T LGG 128879231 + 128879211 128879251 41 TGCGTGGATTACAGGCTTTACAGGGTCTGCAGGTGACAATC TGCGTGGATTACAGGCTTTACATGGTCTGCAGGTGACAATC < 41bp 0.865027364841943 0.577885405379104 0.85879415 0.31685117 prediction 0.574283918925679 Functional Loss - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128879231 chrX:128879233 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_56650 0 0 0 0 2 XPNPEP2 chrX:128879242 5'GT 128879242 Upstream 10bp
chr11 55653315 55653315 1 + G T LUAD 55653312 + 55653292 55653332 41 GAGTGGGCTGCTGAGGAACGCCGGGTAAGTGATGCCTCTGA GAGTGGGCTGCTGAGGAACGCCGTGTAAGTGATGCCTCTGA < 41bp 0.787130635666274 0.409328480228352 0.87328887 0.26171434 prediction 0.574261271332549 Functional Loss - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55653312 chr11:55653315 synonymous SNV . 0 24 hm5C_associated_SNPs_56652 0 0 0 0 1 TRIM51 chr11:55653315 5'GT 55653315 Upstream 1bp
chr11 55653314 55653314 1 + G T LUSC 55653312 + 55653292 55653332 41 GAGTGGGCTGCTGAGGAACGCCGGGTAAGTGATGCCTCTGA GAGTGGGCTGCTGAGGAACGCCTGGTAAGTGATGCCTCTGA < 41bp 0.787130635666274 0.454916536841611 0.87328887 0.23875606 prediction 0.574261271332549 Functional Loss - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55653312 chr11:55653314 nonsynonymous SNV 0.008 1 23 hm5C_associated_SNPs_56653 0 0 0 0 1 TRIM51 chr11:55653315 5'GT 55653315 Upstream 2bp
chr7 129919397 129919397 1 + G T OV 129919394 + 129919374 129919414 41 AAATCCATAGTGGACTTCATCAAGAGTCATGGAAAAGTCAA AAATCCATAGTGGACTTCATCAATAGTCATGGAAAAGTCAA < 41bp 0.892160468932634 0.605049932235034 0.81879926 0.09754044 prediction 0.5742210733952 Functional Loss - CPA2 ENSG00000158516 CDS Human protein_coding chr7:129919394 chr7:129919397 nonsynonymous SNV 0.893 1 24 hm5C_associated_SNPs_56654 0 0 0 0 1 CPA2 chr7:129919303 3'AG 129919303 Downstream 95bp
chr10 103361091 103361091 1 + G T GBM 103361088 + 103361068 103361108 41 ATCATTGTCAGAACAACCAACAAGAAGTGAGTAGCGTGGAA ATCATTGTCAGAACAACCAACAATAAGTGAGTAGCGTGGAA < 41bp 0.787100422196657 0.412813620135251 0.4086566 0.34760112 prediction 0.574200844393314 Functional Loss - DPCD ENSG00000166171 CDS Human protein_coding chr10:103361088 chr10:103361091 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_56657 0 0 0 0 1 DPCD chr10:103361093 5'GT 103361093 Upstream 3bp
chr16 67208570 67208570 1 + G C BRCA 67208569 + 67208549 67208589 41 TCCATGCCCAGGCCACTGGACGCCGGAGGCACCCGGCTCGG TCCATGCCCAGGCCACTGGACCCCGGAGGCACCCGGCTCGG < 41bp 0.818307887276032 0.531214928077775 0.55790114 0.31626302 prediction 0.574185918396513 Functional Loss - NOL3 ENSG00000140939 CDS Human protein_coding chr16:67208569 chr16:67208570 nonsynonymous SNV 0.700 2 22 hm5C_associated_SNPs_56658 0 0 0 0 1 NOL3 chr16:67208524 3'AG 67208524 Downstream 47bp
chr14 105930894 105930894 1 + G T BLCA 105930892 + 105930872 105930912 41 GGAGAGAGGCCAGGACCAAACCGCAGTAACATGGTAAGGGG GGAGAGAGGCCAGGACCAAACCTCAGTAACATGGTAAGGGG < 41bp 0.845003151788281 0.557915900124283 0.4453625 0.27635652 prediction 0.574174503327997 Functional Loss - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105930892 chr14:105930894 nonsynonymous SNV 0.994 1 23 hm5C_associated_SNPs_56659 0 0 1 0 2 MTA1 chr14:105930800 3'AG 105930800 Downstream 95bp
chr14 105930894 105930894 1 + G T BLCA 105930892 + 105930872 105930912 41 GGAGAGAGGCCAGGACCAAACCGCAGTAACATGGTAAGGGG GGAGAGAGGCCAGGACCAAACCTCAGTAACATGGTAAGGGG < 41bp 0.845003151788281 0.557915900124283 0.4453625 0.27635652 prediction 0.574174503327997 Functional Loss - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105930892 chr14:105930894 nonsynonymous SNV 0.994 1 23 hm5C_associated_SNPs_56659 0 0 1 0 2 MTA1 chr14:105930904 5'GT 105930904 Upstream 11bp
chr7 75608805 75608805 1 + G T UCEC 75608803 + 75608783 75608823 41 CGTGTTCTACGGCTCCCAGACGGGGACTGCAGAGGAGTTTG CGTGTTCTACGGCTCCCAGACGTGGACTGCAGAGGAGTTTG < 41bp 0.864232389968395 0.577147539652488 0.8478393 0.35804266 prediction 0.574169700631813 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75608803 chr7:75608805 nonsynonymous SNV 0.982 5 23 hm5C_associated_SNPs_56660 0 0 1 1 2 POR chr7:75608769 3'AG 75608769 Downstream 37bp
chr7 75608805 75608805 1 + G T UCEC 75608803 + 75608783 75608823 41 CGTGTTCTACGGCTCCCAGACGGGGACTGCAGAGGAGTTTG CGTGTTCTACGGCTCCCAGACGTGGACTGCAGAGGAGTTTG < 41bp 0.864232389968395 0.577147539652488 0.8478393 0.35804266 prediction 0.574169700631813 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75608803 chr7:75608805 nonsynonymous SNV 0.982 5 23 hm5C_associated_SNPs_56660 0 0 1 1 2 POR chr7:75608897 5'GT 75608897 Upstream 93bp
chr7 102065493 102065493 1 + A C ESCA 102065489 + 102065469 102065509 41 CAGCCCAAGGAGCAGGGGTCCAGCAGCTCTGCGGAGGCATC CAGCCCAAGGAGCAGGGGTCCAGCCGCTCTGCGGAGGCATC < 41bp 0.787067734865711 0.39812189193552 0.75129604 0.27225602 prediction 0.574135469731421 Functional Loss - PRKRIP1 ENSG00000128563 CDS Human protein_coding chr7:102065489 chr7:102065493 nonsynonymous SNV 0.619 0 25 hm5C_associated_SNPs_56662 0 0 1 0 1 PRKRIP1 chr7:102065461 3'AG 102065461 Downstream 33bp
chr3 102189268 102189268 1 + G T LUAD 102189266 + 102189246 102189286 41 CCACAGAGAAAGGAGAGATGCTGGGAGGAGGACGACTTGGA CCACAGAGAAAGGAGAGATGCTTGGAGGAGGACGACTTGGA < 41bp 0.787055237178862 0.457655379728324 0.73671997 0.16906255 prediction 0.574110474357723 Functional Loss - ZPLD1 ENSG00000170044 CDS Human protein_coding chr3:102189266 chr3:102189268 nonsynonymous SNV 0.003 3 23 hm5C_associated_SNPs_56664 0 0 0 0 2 ZPLD1 chr3:102189238 3'AG 102189238 Downstream 31bp
chr3 102189268 102189268 1 + G T LUAD 102189266 + 102189246 102189286 41 CCACAGAGAAAGGAGAGATGCTGGGAGGAGGACGACTTGGA CCACAGAGAAAGGAGAGATGCTTGGAGGAGGACGACTTGGA < 41bp 0.787055237178862 0.457655379728324 0.73671997 0.16906255 prediction 0.574110474357723 Functional Loss - ZPLD1 ENSG00000170044 CDS Human protein_coding chr3:102189266 chr3:102189268 nonsynonymous SNV 0.003 3 23 hm5C_associated_SNPs_56664 0 0 0 0 2 ZPLD1 chr3:102189346 5'GT 102189346 Upstream 79bp
chr19 40480324 40480324 1 + G T UCEC 40480322 + 40480302 40480342 41 GTGCTGCCCCCCGAAGCCGACAGCAGCATCATGATGCTCAC GTGCTGCCCCCCGAAGCCGACATCAGCATCATGATGCTCAC < 41bp 0.868186996056471 0.581141394588798 0.16211998 0.029650748 prediction 0.574091202935347 Functional Loss - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40480322 chr19:40480324 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_56665 0 0 0 0 1 PSMC4 chr19:40480347 5'GT 40480347 Upstream 24bp
chr19 15784348 15784348 1 + G T LUAD 15784346 + 15784326 15784366 41 CTCTGCCCTGCAGGATGTCGCTGCTGAGCCTGCCCTGGCTG CTCTGCCCTGCAGGATGTCGCTTCTGAGCCTGCCCTGGCTG < 41bp 0.787042972389333 0.447543414954261 0.37038034 0.11124024 prediction 0.574085944778667 Functional Loss - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15784346 chr19:15784348 synonymous SNV . 0 23 hm5C_associated_SNPs_56667 0 0 1 0 1 CYP4F12 chr19:15784339 3'AG 15784339 Downstream 10bp
chr3 49044932 49044932 1 + G T rs62262472 49044929 + 49044909 49044949 41 GCTTATACTCCTCCCAGTGACGGGTCTGGAGTGCGTGGGGG GCTTATACTCCTCCCAGTGACGGTTCTGGAGTGCGTGGGGG < 41bp 0.787035324193235 0.452907223528904 0.36588502 0.10642034 prediction 0.574070648386469 Functional Loss - WDR6 ENSG00000178252 CDS Human protein_coding chr3:49044929 chr3:49044932 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_56669 0 0 1 0 1 WDR6 chr3:49044964 5'GT 49044964 Upstream 33bp
chr5 110075051 110075051 1 + G T UCEC 110075048 + 110075028 110075068 41 TCCACCCCGTACGAAGGCCCCACGGAGGAACCCTTTTCCAG TCCACCCCGTACGAAGGCCCCACTGAGGAACCCTTTTCCAG < 41bp 0.88439550330073 0.597377954068606 0.063712806 0.028950036 prediction 0.574035098464249 Functional Loss - SLC25A46 ENSG00000164209 CDS Human protein_coding chr5:110075048 chr5:110075051 synonymous SNV . 0 24 hm5C_associated_SNPs_56670 0 0 1 0 1 SLC25A46 chr5:110075103 5'GT 110075103 Upstream 53bp
chr12 72372748 72372748 1 + G T LUAD 72372745 + 72372725 72372765 41 TTTTTAGAAAGGTCTGGCTTCACGGTGAGGCCGGTGGCTGG TTTTTAGAAAGGTCTGGCTTCACTGTGAGGCCGGTGGCTGG < 41bp 0.89105884694381 0.604044584630761 0.4725091 0.28665984 prediction 0.574028524626099 Functional Loss - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72372745 chr12:72372748 synonymous SNV . 0 24 hm5C_associated_SNPs_56671 0 0 0 0 1 TPH2 chr12:72372732 3'AG 72372732 Downstream 17bp
chr9 139840540 139840540 1 + G T CESC 139840537 + 139840517 139840557 41 CTACTGTGGCTCTGCCCCAGCCCGAGACGCCCGAGGGGCTG CTACTGTGGCTCTGCCCCAGCCCTAGACGCCCGAGGGGCTG < 41bp 0.787011146842837 0.404225208994739 0.31035507 0.11281839 prediction 0.574022293685675 Functional Loss - C8G ENSG00000176919 CDS Human protein_coding chr9:139840537 chr9:139840540 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_56672 0 0 1 0 1 C8G chr9:139840537 3'AG 139840537 Downstream 4bp
chr4 7774651 7774651 1 - C A UCEC 7774654 - 7774634 7774674 41 AGGAGGCGGAGCGTGTCAGCCTGGAGCTGGAGCTGACGGAG AGGAGGCGGAGCGTGTCAGCCTGTAGCTGGAGCTGACGGAG < 41bp 0.884922614715467 0.59792780711635 0.4987271 0.20555288 prediction 0.573989615198234 Functional Loss - AFAP1 ENSG00000196526 CDS Human protein_coding chr4:7774654 chr4:7774651 stopgain 0.984 1 24 hm5C_associated_SNPs_56674 0 0 1 0 1 AFAP1 chr4:7774737 3'AG 7774737 Downstream 87bp
chr12 32854484 32854484 1 + G T LGG 32854482 + 32854462 32854502 41 AGAAGATAAACGGAAAACAACAGGAGAAGAAAATGGTAAAT AGAAGATAAACGGAAAACAACATGAGAAGAAAATGGTAAAT < 41bp 0.817330409133191 0.530342656957261 0.90446925 0.5580977 prediction 0.57397550435186 Functional Loss - DNM1L ENSG00000087470 CDS Human protein_coding chr12:32854482 chr12:32854484 stopgain 1.000 1 23 hm5C_associated_SNPs_56677 0 0 1 0 1 DNM1L chr12:32854496 5'GT 32854496 Upstream 13bp
chr11 126110725 126110725 1 + A C HNSC 126110721 + 126110701 126110741 41 GCTTAAAAACTAAGAAGCCTCGAGAACTTGTGCTAGTGATT GCTTAAAAACTAAGAAGCCTCGAGCACTTGTGCTAGTGATT < 41bp 0.786987288549006 0.390068008380079 0.5536839 0.28160763 prediction 0.573974577098012 Functional Loss - FAM118B ENSG00000197798 CDS Human protein_coding chr11:126110721 chr11:126110725 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_56678 0 0 1 0 1 FAM118B chr11:126110687 3'AG 126110687 Downstream 39bp
chr2 220397059 220397059 1 + G T CHOL 220397057 + 220397037 220397077 41 CTGACCTACCTGCCCCAGCCCTGGGGCAACTGCCGCGCAGA CTGACCTACCTGCCCCAGCCCTTGGGCAACTGCCGCGCAGA < 41bp 0.861360512592614 0.574373285410644 0.8464676 0.16972855 prediction 0.57397445436394 Functional Loss - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220397057 chr2:220397059 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_56679 0 0 0 0 1 ASIC4 chr2:220397037 3'AG 220397037 Downstream 23bp
chr1 28261707 28261707 1 + G C PAAD 28261706 + 28261686 28261726 41 GCCCCGAGGATGAGGCTGCTCGCCTGGCTGATTTTCCTGGC GCCCCGAGGATGAGGCTGCTCCCCTGGCTGATTTTCCTGGC < 41bp 0.793736711670538 0.50675124093341 0.22150487 0.10966584 prediction 0.573970941474256 Functional Loss - SMPDL3B ENSG00000130768 CDS Human protein_coding chr1:28261706 chr1:28261707 nonsynonymous SNV 0.008 0 22 hm5C_associated_SNPs_56680 0 0 0 0 1 SMPDL3B chr1:28261755 5'GT 28261755 Upstream 49bp
chr16 27454418 27454418 1 + G C HNSC 27454417 + 27454397 27454437 41 ATGAGCTGCAGTACAGGAACCGGGGAGACCCCTGGGCTGTG ATGAGCTGCAGTACAGGAACCCGGGAGACCCCTGGGCTGTG < 41bp 0.820139054238834 0.533160650353816 0.8994628 0.89619875 prediction 0.573956807770037 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27454417 chr16:27454418 nonsynonymous SNV 0.042 2 22 hm5C_associated_SNPs_56682 0 0 0 0 1 IL21R chr16:27454437 5'GT 27454437 Upstream 20bp
chr21 22906922 22906922 1 + G T STAD 22906919 + 22906899 22906939 41 AGGATGAAAGAGTTACTAATCACGAAGATGGGAGCCCAGTA AGGATGAAAGAGTTACTAATCACTAAGATGGGAGCCCAGTA < 41bp 0.786971008272355 0.46965365070638 0.60574377 0.41088754 prediction 0.57394201654471 Functional Loss - NCAM2 ENSG00000154654 CDS Human protein_coding chr21:22906919 chr21:22906922 stopgain 0.994 0 24 hm5C_associated_SNPs_56683 0 0 0 0 2 NCAM2 chr21:22906858 3'AG 22906858 Downstream 65bp
chr21 22906922 22906922 1 + G T STAD 22906919 + 22906899 22906939 41 AGGATGAAAGAGTTACTAATCACGAAGATGGGAGCCCAGTA AGGATGAAAGAGTTACTAATCACTAAGATGGGAGCCCAGTA < 41bp 0.786971008272355 0.46965365070638 0.60574377 0.41088754 prediction 0.57394201654471 Functional Loss - NCAM2 ENSG00000154654 CDS Human protein_coding chr21:22906919 chr21:22906922 stopgain 0.994 0 24 hm5C_associated_SNPs_56683 0 0 0 0 2 NCAM2 chr21:22906977 5'GT 22906977 Upstream 56bp
chr16 1825398 1825398 1 + G T KIRC 1825396 + 1825376 1825416 41 CGAGGTGGCCGTCAGCTGGCCGGAGGTGGAAGAGGTGAGGG CGAGGTGGCCGTCAGCTGGCCGTAGGTGGAAGAGGTGAGGG < 41bp 0.786957304143229 0.453294915784788 0.90313256 0.8342495 prediction 0.573914608286457 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825396 chr16:1825398 stopgain 0.122 0 23 hm5C_associated_SNPs_56685 0 0 1 0 3 EME2 chr16:1825316 3'AG 1825316 Downstream 83bp
chr16 1825398 1825398 1 + G T KIRC 1825396 + 1825376 1825416 41 CGAGGTGGCCGTCAGCTGGCCGGAGGTGGAAGAGGTGAGGG CGAGGTGGCCGTCAGCTGGCCGTAGGTGGAAGAGGTGAGGG < 41bp 0.786957304143229 0.453294915784788 0.90313256 0.8342495 prediction 0.573914608286457 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825396 chr16:1825398 stopgain 0.122 0 23 hm5C_associated_SNPs_56685 0 0 1 0 3 EME2 chr16:1825409 5'GT 1825409 Upstream 12bp
chr16 1825398 1825398 1 + G T KIRC 1825396 + 1825376 1825416 41 CGAGGTGGCCGTCAGCTGGCCGGAGGTGGAAGAGGTGAGGG CGAGGTGGCCGTCAGCTGGCCGTAGGTGGAAGAGGTGAGGG < 41bp 0.786957304143229 0.453294915784788 0.90313256 0.8342495 prediction 0.573914608286457 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825396 chr16:1825398 stopgain 0.122 0 23 hm5C_associated_SNPs_56685 0 0 1 0 3 EME2 chr16:1825430 5'GT 1825430 Upstream 33bp
chr19 17322582 17322582 1 + A T HNSC 17322578 + 17322558 17322598 41 GCGGGCCGGGCGGGGGGCCTCGGAAGGTCAGTATTAAGGTA GCGGGCCGGGCGGGGGGCCTCGGATGGTCAGTATTAAGGTA < 41bp 0.789182659583977 0.502226706744261 0.90452075 0.71030235 prediction 0.573911905679433 Functional Loss - MYO9B ENSG00000099331 CDS Human protein_coding chr19:17322578 chr19:17322582 nonsynonymous SNV 0.970 4 25 hm5C_associated_SNPs_56686 0 0 0 0 2 MYO9B chr19:17322583 5'GT 17322583 Upstream 2bp
chr19 17322582 17322582 1 + A T HNSC 17322578 + 17322558 17322598 41 GCGGGCCGGGCGGGGGGCCTCGGAAGGTCAGTATTAAGGTA GCGGGCCGGGCGGGGGGCCTCGGATGGTCAGTATTAAGGTA < 41bp 0.789182659583977 0.502226706744261 0.90452075 0.71030235 prediction 0.573911905679433 Functional Loss - MYO9B ENSG00000099331 CDS Human protein_coding chr19:17322578 chr19:17322582 nonsynonymous SNV 0.970 4 25 hm5C_associated_SNPs_56686 0 0 0 0 2 MYO9B chr19:17322595 5'GT 17322595 Upstream 14bp
chr14 105054645 105054645 1 + G T LUAD 105054642 + 105054622 105054662 41 AAGAACGCCACAGCCACTGTCAGGGGTGAGTTCTGAGCCCA AAGAACGCCACAGCCACTGTCAGTGGTGAGTTCTGAGCCCA < 41bp 0.894197173108978 0.607241427204449 0.96031845 0.37289977 prediction 0.573911491809057 Functional Loss - C14orf180 ENSG00000184601 CDS Human protein_coding chr14:105054642 chr14:105054645 nonsynonymous SNV 0.050 0 24 hm5C_associated_SNPs_56687 0 0 1 0 2 C14orf180 chr14:105054611 3'AG 105054611 Downstream 35bp
chr14 105054645 105054645 1 + G T LUAD 105054642 + 105054622 105054662 41 AAGAACGCCACAGCCACTGTCAGGGGTGAGTTCTGAGCCCA AAGAACGCCACAGCCACTGTCAGTGGTGAGTTCTGAGCCCA < 41bp 0.894197173108978 0.607241427204449 0.96031845 0.37289977 prediction 0.573911491809057 Functional Loss - C14orf180 ENSG00000184601 CDS Human protein_coding chr14:105054642 chr14:105054645 nonsynonymous SNV 0.050 0 24 hm5C_associated_SNPs_56687 0 0 1 0 2 C14orf180 chr14:105054646 5'GT 105054646 Upstream 2bp
chrX 147106432 147106432 1 + G T LUAD 147106429 + 147106409 147106449 41 GCAGGACAACAGAGTTGTAACGGGTTTGAAGAAACAAAGAA GCAGGACAACAGAGTTGTAACGGTTTTGAAGAAACAAAGAA < 41bp 0.786946648473724 0.416309026236002 0.7106805 0.14289725 prediction 0.573893296947448 Functional Loss - FMR1NB ENSG00000176988 CDS Human protein_coding chrX:147106429 chrX:147106432 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_56688 0 0 0 0 1 FMR1NB chrX:147106385 3'AG 147106385 Downstream 48bp
chr9 91930186 91930186 1 + G T THCA 91930184 + 91930164 91930204 41 GGTGTCCAACAGAGTCTAGGCTGGGTTCATTACATGATTCA GGTGTCCAACAGAGTCTAGGCTTGGTTCATTACATGATTCA < 41bp 0.836946747091832 0.550009220560736 0.39216775 0.18835104 prediction 0.573875053062191 Functional Loss - CKS2 ENSG00000123975 CDS Human protein_coding chr9:91930184 chr9:91930186 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_56690 0 0 1 0 1 CKS2 chr9:91930212 5'GT 91930212 Upstream 27bp
chr1 160093036 160093036 1 + G T LUSC 160093033 + 160093013 160093053 41 ACCAGCGGGCTCAGGACGTTCTGGCTCGAGATGGGCCCAAC ACCAGCGGGCTCAGGACGTTCTGTCTCGAGATGGGCCCAAC < 41bp 0.78692689261571 0.398806996543431 0.15800402 0.02315554 prediction 0.573853785231421 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160093033 chr1:160093036 nonsynonymous SNV 0.958 1 24 hm5C_associated_SNPs_56692 0 0 0 0 1 ATP1A2 chr1:160093003 3'AG 160093003 Downstream 34bp
chr17 78796025 78796025 1 + G T BLCA 78796022 + 78796002 78796042 41 ATCCCTGGCCGCCTGAACGACAGGAGGACGCCCCTGGGTGA ATCCCTGGCCGCCTGAACGACAGTAGGACGCCCCTGGGTGA < 41bp 0.786920985607284 0.415707073131384 0.80149937 0.15855056 prediction 0.573841971214568 Functional Loss - RPTOR ENSG00000141564 CDS Human protein_coding chr17:78796022 chr17:78796025 nonsynonymous SNV 0.953 4 24 hm5C_associated_SNPs_56693 0 0 1 0 2 RPTOR chr17:78796001 3'AG 78796001 Downstream 25bp
chr17 78796025 78796025 1 + G T BLCA 78796022 + 78796002 78796042 41 ATCCCTGGCCGCCTGAACGACAGGAGGACGCCCCTGGGTGA ATCCCTGGCCGCCTGAACGACAGTAGGACGCCCCTGGGTGA < 41bp 0.786920985607284 0.415707073131384 0.80149937 0.15855056 prediction 0.573841971214568 Functional Loss - RPTOR ENSG00000141564 CDS Human protein_coding chr17:78796022 chr17:78796025 nonsynonymous SNV 0.953 4 24 hm5C_associated_SNPs_56693 0 0 1 0 2 RPTOR chr17:78796101 5'GT 78796101 Upstream 77bp
chr14 21570911 21570911 1 + G T SARC 21570909 + 21570889 21570929 41 AACCAGGATGCTGCAGGAGCCAGAGTCTGCACTATCAAGAG AACCAGGATGCTGCAGGAGCCATAGTCTGCACTATCAAGAG < 41bp 0.786908327578283 0.443625175824908 0.89825153 0.40093964 prediction 0.573816655156565 Functional Loss - TMEM253 ENSG00000232070 CDS Human protein_coding chr14:21570909 chr14:21570911 nonsynonymous SNV 0.980 0 23 hm5C_associated_SNPs_56696 0 0 0 0 1 TMEM253 chr14:21570938 5'GT 21570938 Upstream 28bp
chr2 228147232 228147232 1 + A C UCEC 228147228 + 228147208 228147248 41 AAGAGGATATCCAGGAAATCCGGGAATTTTAGGGCCACCAG AAGAGGATATCCAGGAAATCCGGGCATTTTAGGGCCACCAG < 41bp 0.786901779163659 0.401814239882745 0.9297718 0.9207951 prediction 0.573803558327318 Functional Loss - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228147228 chr2:228147232 synonymous SNV . 0 25 hm5C_associated_SNPs_56698 0 0 0 0 1 COL4A3 chr2:228147248 5'GT 228147248 Upstream 17bp
chr22 37332596 37332596 1 + G T STAD 37332593 + 37332573 37332613 41 ATGTCTCTGCTCTTGCAGAACGGGAGCGCAGAGCTTTGGCC ATGTCTCTGCTCTTGCAGAACGGTAGCGCAGAGCTTTGGCC < 41bp 0.89863213870571 0.611735812871901 0.7042263 0.27538383 prediction 0.573792651667618 Functional Loss - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37332593 chr22:37332596 synonymous SNV . 0 24 hm5C_associated_SNPs_56699 0 0 0 0 2 CSF2RB chr22:37332591 3'AG 37332591 Downstream 6bp
chr22 37332596 37332596 1 + G T STAD 37332593 + 37332573 37332613 41 ATGTCTCTGCTCTTGCAGAACGGGAGCGCAGAGCTTTGGCC ATGTCTCTGCTCTTGCAGAACGGTAGCGCAGAGCTTTGGCC < 41bp 0.89863213870571 0.611735812871901 0.7042263 0.27538383 prediction 0.573792651667618 Functional Loss - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37332593 chr22:37332596 synonymous SNV . 0 24 hm5C_associated_SNPs_56699 0 0 0 0 2 CSF2RB chr22:37332694 5'GT 37332694 Upstream 99bp
chr2 130737709 130737709 1 - C A KIRC 130737711 - 130737691 130737731 41 TGAATTTCCTCAGCGGATTCCCGAAGTCTCCGCCCGCGGAC TGAATTTCCTCAGCGGATTCCCTAAGTCTCCGCCCGCGGAC < 41bp 0.786874468958455 0.457601139878971 0.7662958 0.0646376 prediction 0.573748937916909 Functional Loss - RAB6C ENSG00000222014 CDS Human protein_coding chr2:130737711 chr2:130737709 nonsynonymous SNV 0.008 0 23 hm5C_associated_SNPs_56701 0 0 0 0 1 RAB6C chr2:130737742 3'AG 130737742 Downstream 34bp
chr1 32566070 32566070 1 + G T rs141953556 32566068 + 32566048 32566088 41 CTGAAGAATGCATGTGGCCGCAGGGCGTGCTGGTGAAGCAC CTGAAGAATGCATGTGGCCGCATGGCGTGCTGGTGAAGCAC < 41bp 0.786868515874786 0.464540971484128 0.5096656 0.36247092 prediction 0.573737031749572 Functional Loss - TMEM39B ENSG00000121775 CDS Human protein_coding chr1:32566068 chr1:32566070 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_56704 0 0 1 0 1 TMEM39B chr1:32566043 3'AG 32566043 Downstream 28bp
chr1 224559031 224559031 1 + G T UCEC 224559029 + 224559009 224559049 41 CATGGGAGTGTTTGATCCAACAGAAATACACAATCGAGGGC CATGGGAGTGTTTGATCCAACATAAATACACAATCGAGGGC < 41bp 0.786852838605894 0.470149773198663 0.31959012 0.059298098 prediction 0.573705677211789 Functional Loss - CNIH4;CNIH4 ENSG00000143771 CDS Human protein_coding chr1:224559029 chr1:224559031 stopgain 1.000 1 23 hm5C_associated_SNPs_56705 0 0 1 0 2 CNIH4 chr1:224558985 3'AG 224558985 Downstream 47bp
chr1 224559031 224559031 1 + G T UCEC 224559029 + 224559009 224559049 41 CATGGGAGTGTTTGATCCAACAGAAATACACAATCGAGGGC CATGGGAGTGTTTGATCCAACATAAATACACAATCGAGGGC < 41bp 0.786852838605894 0.470149773198663 0.31959012 0.059298098 prediction 0.573705677211789 Functional Loss - CNIH4;CNIH4 ENSG00000143771 CDS Human protein_coding chr1:224559029 chr1:224559031 stopgain 1.000 1 23 hm5C_associated_SNPs_56705 0 0 1 0 2 CNIH4 chr1:224559125 5'GT 224559125 Upstream 95bp
chr14 24607997 24607997 1 + G T UCEC 24607994 + 24607974 24608014 41 CTTCGAGAAGCTCAAGAAGCCCAGGGGAGAAACAAAGGGAA CTTCGAGAAGCTCAAGAAGCCCATGGGAGAAACAAAGGGAA < 41bp 0.786831732032853 0.438518485866273 0.5076525 0.06513369 prediction 0.573663464065705 Functional Loss - PSME1 ENSG00000092010 CDS Human protein_coding chr14:24607994 chr14:24607997 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_56706 0 0 1 2 1 PSME1 chr14:24607945 3'AG 24607945 Downstream 53bp
chr11 1901374 1901374 1 + G T PAAD 1901372 + 1901352 1901392 41 AGGCCGTCCACGAGCAATGCCAGCATGAGAGAGACAGGCAG AGGCCGTCCACGAGCAATGCCATCATGAGAGAGACAGGCAG < 41bp 0.786826693081283 0.450302854672683 0.3148911 0.09082842 prediction 0.573653386162566 Functional Loss - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1901372 chr11:1901374 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_56707 0 0 0 0 2 LSP1 chr11:1901317 3'AG 1901317 Downstream 58bp
chr11 1901374 1901374 1 + G T PAAD 1901372 + 1901352 1901392 41 AGGCCGTCCACGAGCAATGCCAGCATGAGAGAGACAGGCAG AGGCCGTCCACGAGCAATGCCATCATGAGAGAGACAGGCAG < 41bp 0.786826693081283 0.450302854672683 0.3148911 0.09082842 prediction 0.573653386162566 Functional Loss - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1901372 chr11:1901374 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_56707 0 0 0 0 2 LSP1 chr11:1901454 5'GT 1901454 Upstream 81bp
chr16 31382655 31382655 1 + G T LUAD 31382652 + 31382632 31382672 41 TCAGCTCGGTGCTCTGCCCGCAGGACCAGACCTGTGCTCTG TCAGCTCGGTGCTCTGCCCGCAGTACCAGACCTGTGCTCTG < 41bp 0.786814940330541 0.411521762086969 0.68483496 0.15378517 prediction 0.573629880661082 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31382652 chr16:31382655 nonsynonymous SNV 0.680 3 24 hm5C_associated_SNPs_56709 0 0 0 0 1 ITGAX chr16:31382655 3'AG 31382655 Downstream 1bp
chr7 98249017 98249017 1 + G T STAD 98249015 + 98248995 98249035 41 GCGACTTCCGCGAGGTGCTCCAGCAGCGGCTGGGGGAGCTG GCGACTTCCGCGAGGTGCTCCATCAGCGGCTGGGGGAGCTG < 41bp 0.858701398409044 0.571917691602424 0.92080164 0.8604658 prediction 0.573567413613238 Functional Loss - NPTX2 ENSG00000106236 CDS Human protein_coding chr7:98249015 chr7:98249017 nonsynonymous SNV 0.973 2 23 hm5C_associated_SNPs_56713 0 0 1 0 1 NPTX2 chr7:98248955 3'AG 98248955 Downstream 63bp
chr2 79348705 79348705 1 + G T LUSC 79348703 + 79348683 79348723 41 TTCAGGCCAAGAGGCCCAGACAGAGTTGCCCCAGGCCCGGA TTCAGGCCAAGAGGCCCAGACATAGTTGCCCCAGGCCCGGA < 41bp 0.7867701806903 0.443472289128723 0.9066676 0.3494099 prediction 0.573540361380601 Functional Loss - REG1A ENSG00000115386 CDS Human protein_coding chr2:79348703 chr2:79348705 stopgain 0.001 0 23 hm5C_associated_SNPs_56716 0 0 0 0 1 REG1A chr2:79348688 3'AG 79348688 Downstream 18bp
chr7 108212225 108212225 1 + G T COAD 108212223 + 108212203 108212243 41 AATCTGCATTTTAATGATAACAGAATTAATTCTGGCCTCAA AATCTGCATTTTAATGATAACATAATTAATTCTGGCCTCAA < 41bp 0.786749475612821 0.48626047678762 0.5659429 0.14297244 prediction 0.573498951225642 Functional Loss - DNAJB9 ENSG00000128590 CDS Human protein_coding chr7:108212223 chr7:108212225 stopgain 1.000 1 23 hm5C_associated_SNPs_56719 0 0 1 0 1 DNAJB9 chr7:108212161 3'AG 108212161 Downstream 65bp
chr1 205568273 205568273 1 + G T UCEC 205568271 + 205568251 205568291 41 TTTGGCAGATATTCCAGGCTCAGGGCAGCTATAGTTTCCTG TTTGGCAGATATTCCAGGCTCATGGCAGCTATAGTTTCCTG < 41bp 0.786742177225792 0.449612112157786 0.60518086 0.18028623 prediction 0.573484354451583 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205568271 chr1:205568273 nonsynonymous SNV 0.974 1 23 hm5C_associated_SNPs_56722 0 0 0 5 1 MFSD4A chr1:205568259 3'AG 205568259 Downstream 15bp
chr5 6742698 6742698 1 + G T READ 6742695 + 6742675 6742715 41 GTCCGGGCAGCGGAGTTCATCAAGAATTACATGAAGGTACT GTCCGGGCAGCGGAGTTCATCAATAATTACATGAAGGTACT < 41bp 0.892781500101731 0.606045382487938 0.7579943 0.25422603 prediction 0.573472235227585 Functional Loss - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6742695 chr5:6742698 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_56723 0 0 1 0 2 PAPD7 chr5:6742603 3'AG 6742603 Downstream 96bp
chr5 6742698 6742698 1 + G T READ 6742695 + 6742675 6742715 41 GTCCGGGCAGCGGAGTTCATCAAGAATTACATGAAGGTACT GTCCGGGCAGCGGAGTTCATCAATAATTACATGAAGGTACT < 41bp 0.892781500101731 0.606045382487938 0.7579943 0.25422603 prediction 0.573472235227585 Functional Loss - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6742695 chr5:6742698 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_56723 0 0 1 0 2 PAPD7 chr5:6742710 5'GT 6742710 Upstream 13bp
chr12 69991044 69991044 1 + G T THCA 69991041 + 69991021 69991061 41 AGACAAACTCATTCACTTTTCTGGGGTTGCCCTTGGTGAGT AGACAAACTCATTCACTTTTCTGTGGTTGCCCTTGGTGAGT < 41bp 0.786702550456215 0.406753879160845 0.40697196 0.06259963 prediction 0.57340510091243 Functional Loss - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69991041 chr12:69991044 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_56726 0 0 1 0 1 CCT2 chr12:69991055 5'GT 69991055 Upstream 12bp
chr3 128621446 128621446 1 + G T rs549000613 128621443 + 128621423 128621463 41 CGGTTCAGCATGGGCAGCGTCGTGGCTGGGCTGCTCAAGAG CGGTTCAGCATGGGCAGCGTCGTTGCTGGGCTGCTCAAGAG < 41bp 0.786637734575419 0.392866358100596 0.39452243 0.10069239 prediction 0.573275469150837 Functional Loss - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128621443 chr3:128621446 synonymous SNV . 0 24 hm5C_associated_SNPs_56727 1 0 1 1 3 ACAD9 chr3:128621396 3'AG 128621396 Downstream 51bp
chr3 128621446 128621446 1 + G T rs549000613 128621443 + 128621423 128621463 41 CGGTTCAGCATGGGCAGCGTCGTGGCTGGGCTGCTCAAGAG CGGTTCAGCATGGGCAGCGTCGTTGCTGGGCTGCTCAAGAG < 41bp 0.786637734575419 0.392866358100596 0.39452243 0.10069239 prediction 0.573275469150837 Functional Loss - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128621443 chr3:128621446 synonymous SNV . 0 24 hm5C_associated_SNPs_56727 1 0 1 1 3 ACAD9 chr3:128621471 5'GT 128621471 Upstream 26bp
chr3 128621446 128621446 1 + G T rs549000613 128621443 + 128621423 128621463 41 CGGTTCAGCATGGGCAGCGTCGTGGCTGGGCTGCTCAAGAG CGGTTCAGCATGGGCAGCGTCGTTGCTGGGCTGCTCAAGAG < 41bp 0.786637734575419 0.392866358100596 0.39452243 0.10069239 prediction 0.573275469150837 Functional Loss - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128621443 chr3:128621446 synonymous SNV . 0 24 hm5C_associated_SNPs_56727 1 0 1 1 3 ACAD9 chr3:128621475 5'GT 128621475 Upstream 30bp
chr7 105189035 105189035 1 + G T PAAD 105189033 + 105189013 105189053 41 TACTGAGCCAAAGCAACTCCCAGAAAAATACTCTCTTCCTG TACTGAGCCAAAGCAACTCCCATAAAAATACTCTCTTCCTG < 41bp 0.786631436875601 0.45652188920732 0.20531183 0.18275866 prediction 0.573262873751203 Functional Loss - RINT1 ENSG00000135249 CDS Human protein_coding chr7:105189033 chr7:105189035 stopgain 1.000 0 23 hm5C_associated_SNPs_56728 0 0 1 0 1 RINT1;RINT1 chr7:105189001 3'AG 105189001 Downstream 35bp
chr8 11640745 11640745 1 + G T LUSC 11640743 + 11640723 11640763 41 ACTTTGGTGGTGGTGGCTTCCTGGCATTTTATAATTGTCAG ACTTTGGTGGTGGTGGCTTCCTTGCATTTTATAATTGTCAG < 41bp 0.786619168758078 0.458248876470477 0.05663967 0.052158654 prediction 0.573238337516156 Functional Loss - NEIL2 ENSG00000154328 CDS Human protein_coding chr8:11640743 chr8:11640745 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_56730 0 0 1 0 1 NEIL2 chr8:11640712 3'AG 11640712 Downstream 34bp
chr1 32936203 32936203 1 + G T LIHC 32936200 + 32936180 32936220 41 GGCAGAGATACAGGTTTGCTCTGGAGCAGCAGCAGCTGGCG GGCAGAGATACAGGTTTGCTCTGTAGCAGCAGCAGCTGGCG < 41bp 0.786609035980821 0.491019087592134 0.646988 0.3103432 prediction 0.573218071961642 Functional Loss - ZBTB8B ENSG00000254553;ENSG00000273274 UTR5 Human other chr1:32936200 chr1:32936203 . . 0 24 hm5C_associated_SNPs_56731 0 0 1 0 1 ZBTB8B chr1:32936185 3'AG 32936185 Downstream 19bp
chr19 36245219 36245219 1 + A T LUSC 36245215 + 36245195 36245235 41 CAGCGCTGGAAACGCATCCGCCAGAGGTGAGCGTCCCCCAG CAGCGCTGGAAACGCATCCGCCAGTGGTGAGCGTCCCCCAG < 41bp 0.810440332382828 0.523835495347713 0.9208733 0.6635628 prediction 0.57320967407023 Functional Loss - LIN37 ENSG00000267796 CDS Human protein_coding chr19:36245215 chr19:36245219 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_56733 0 0 0 0 2 LIN37 chr19:36245147 3'AG 36245147 Downstream 73bp
chr19 36245219 36245219 1 + A T LUSC 36245215 + 36245195 36245235 41 CAGCGCTGGAAACGCATCCGCCAGAGGTGAGCGTCCCCCAG CAGCGCTGGAAACGCATCCGCCAGTGGTGAGCGTCCCCCAG < 41bp 0.810440332382828 0.523835495347713 0.9208733 0.6635628 prediction 0.57320967407023 Functional Loss - LIN37 ENSG00000267796 CDS Human protein_coding chr19:36245215 chr19:36245219 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_56733 0 0 0 0 2 LIN37 chr19:36245220 5'GT 36245220 Upstream 2bp
chr2 88478314 88478314 1 + G T UCEC 88478312 + 88478292 88478332 41 CCCCTGGCAGTGGAGGGAAACAGCGATGAGCTCGATGAGCC CCCCTGGCAGTGGAGGGAAACATCGATGAGCTCGATGAGCC < 41bp 0.78657550195468 0.442867625002993 0.48741436 0.20341623 prediction 0.573151003909359 Functional Loss - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88478312 chr2:88478314 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_56735 0 0 0 0 1 THNSL2 chr2:88478302 3'AG 88478302 Downstream 13bp
chr14 89336457 89336457 1 + G T UCEC 89336454 + 89336434 89336474 41 ATTACAAAGAAGTTTTGAAACAAGACAATACTCATGTGGAA ATTACAAAGAAGTTTTGAAACAATACAATACTCATGTGGAA < 41bp 0.786570788880758 0.429772313616145 0.7589979 0.44594574 prediction 0.573141577761517 Functional Loss - TTC8 ENSG00000165533 CDS Human protein_coding chr14:89336454 chr14:89336457 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_56736 0 0 1 0 2 TTC8 chr14:89336403 3'AG 89336403 Downstream 55bp
chr14 89336457 89336457 1 + G T UCEC 89336454 + 89336434 89336474 41 ATTACAAAGAAGTTTTGAAACAAGACAATACTCATGTGGAA ATTACAAAGAAGTTTTGAAACAATACAATACTCATGTGGAA < 41bp 0.786570788880758 0.429772313616145 0.7589979 0.44594574 prediction 0.573141577761517 Functional Loss - TTC8 ENSG00000165533 CDS Human protein_coding chr14:89336454 chr14:89336457 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_56736 0 0 1 0 2 TTC8 chr14:89336542 5'GT 89336542 Upstream 86bp
chr2 175193243 175193243 1 + A T rs187264016 175193239 + 175193219 175193259 41 GAGAAGATGGACGAGTGTGTCTGCAGCCGAGGAGACAACTA GAGAAGATGGACGAGTGTGTCTGCTGCCGAGGAGACAACTA < 41bp 0.786550276843189 0.495770725653379 0.5163742 0.24456772 prediction 0.573100553686378 Functional Loss - LINC01305 ENSG00000231453 ncRNA_exonic Human lincRNA chr2:175193239 chr2:175193243 . . 0 25 hm5C_associated_SNPs_56740 0 0 0 0 1 LINC01305 chr2:175193185 3'AG 175193185 Downstream 59bp
chr11 89405072 89405072 1 + G T LUAD 89405069 + 89405049 89405089 41 TTCTAGACAGATATGTCATTCTGGGAGGTCACCGGGACTCA TTCTAGACAGATATGTCATTCTGTGAGGTCACCGGGACTCA < 41bp 0.786549547279319 0.444084924344991 0.89200807 0.34261674 prediction 0.573099094558638 Functional Loss - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89405069 chr11:89405072 . . 0 24 hm5C_associated_SNPs_56741 0 0 0 0 1 FOLH1B chr11:89405055 3'AG 89405055 Downstream 18bp
chr4 189065256 189065256 1 + G T LUSC 189065253 + 189065233 189065273 41 GAGCTGAGTCTGTGCCGCATCACGGGAATGAAGGAGATGCT GAGCTGAGTCTGTGCCGCATCACTGGAATGAAGGAGATGCT < 41bp 0.786547556692356 0.401682469408212 0.31354025 0.100853235 prediction 0.573095113384711 Functional Loss - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189065253 chr4:189065256 synonymous SNV . 0 24 hm5C_associated_SNPs_56742 0 0 0 0 2 TRIML1 chr4:189065190 3'AG 189065190 Downstream 67bp
chr4 189065256 189065256 1 + G T LUSC 189065253 + 189065233 189065273 41 GAGCTGAGTCTGTGCCGCATCACGGGAATGAAGGAGATGCT GAGCTGAGTCTGTGCCGCATCACTGGAATGAAGGAGATGCT < 41bp 0.786547556692356 0.401682469408212 0.31354025 0.100853235 prediction 0.573095113384711 Functional Loss - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189065253 chr4:189065256 synonymous SNV . 0 24 hm5C_associated_SNPs_56742 0 0 0 0 2 TRIML1 chr4:189065287 5'GT 189065287 Upstream 32bp
chr7 76054540 76054540 1 + G T COAD 76054538 + 76054518 76054558 41 GCCTCTGGTCTCCATGGACACAGAAGATGTGGTCAGGTTTG GCCTCTGGTCTCCATGGACACATAAGATGTGGTCAGGTTTG < 41bp 0.78654753941231 0.455796814167477 0.4630611 0.16248658 prediction 0.57309507882462 Functional Loss - ZP3 ENSG00000188372 CDS Human protein_coding chr7:76054538 chr7:76054540 stopgain 0.275 0 23 hm5C_associated_SNPs_56743 0 0 0 0 1 ZP3 chr7:76054593 5'GT 76054593 Upstream 54bp
chr1 23697681 23697681 1 + G T SARC 23697679 + 23697659 23697699 41 CCAGGACGACTCCCCGGGCTCAGCTTGGCTGCCTGCCTCCT CCAGGACGACTCCCCGGGCTCATCTTGGCTGCCTGCCTCCT < 41bp 0.798237009818382 0.51169886711362 0.2365107 0.06839162 prediction 0.573076285409523 Functional Loss - ZNF436-AS1 ENSG00000249087 CDS Human antisense chr1:23697679 chr1:23697681 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_56744 0 0 1 0 2 ZNF436-AS1 chr1:23697632 3'AG 23697632 Downstream 50bp
chr1 23697681 23697681 1 + G T SARC 23697679 + 23697659 23697699 41 CCAGGACGACTCCCCGGGCTCAGCTTGGCTGCCTGCCTCCT CCAGGACGACTCCCCGGGCTCATCTTGGCTGCCTGCCTCCT < 41bp 0.798237009818382 0.51169886711362 0.2365107 0.06839162 prediction 0.573076285409523 Functional Loss - ZNF436-AS1 ENSG00000249087 CDS Human antisense chr1:23697679 chr1:23697681 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_56744 0 0 1 0 2 ZNF436-AS1 chr1:23697702 5'GT 23697702 Upstream 22bp
chr15 67073392 67073392 1 + G T BLCA 67073390 + 67073370 67073410 41 CACTGGTGCAGCGTGGCGTACTGGGAGCACCGGACGCGCGT CACTGGTGCAGCGTGGCGTACTTGGAGCACCGGACGCGCGT < 41bp 0.844413273082067 0.557875522426324 0.59302866 0.32525796 prediction 0.573075501311487 Functional Loss - SMAD6 ENSG00000137834 CDS Human protein_coding chr15:67073390 chr15:67073392 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_56745 0 0 1 0 1 SMAD6 chr15:67073335 3'AG 67073335 Downstream 58bp
chr19 39961065 39961065 1 + G T UCEC 39961063 + 39961043 39961083 41 GCTCTGCTCAGAGACAGCATCAGGTGTGGATGTTGGGGGCC GCTCTGCTCAGAGACAGCATCATGTGTGGATGTTGGGGGCC < 41bp 0.854199529431198 0.567666832694263 0.9284229 0.35064268 prediction 0.573065393473869 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39961063 chr19:39961065 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_56746 0 0 1 0 2 SUPT5H chr19:39961017 3'AG 39961017 Downstream 49bp
chr19 39961065 39961065 1 + G T UCEC 39961063 + 39961043 39961083 41 GCTCTGCTCAGAGACAGCATCAGGTGTGGATGTTGGGGGCC GCTCTGCTCAGAGACAGCATCATGTGTGGATGTTGGGGGCC < 41bp 0.854199529431198 0.567666832694263 0.9284229 0.35064268 prediction 0.573065393473869 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39961063 chr19:39961065 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_56746 0 0 1 0 2 SUPT5H chr19:39961163 5'GT 39961163 Upstream 99bp
chr11 86119267 86119267 1 + G T SARC 86119265 + 86119245 86119285 41 TAGAAGATGAGAGACTCATACAGCAGTATCAGATGTTAAAG TAGAAGATGAGAGACTCATACATCAGTATCAGATGTTAAAG < 41bp 0.786529073828608 0.457346323022382 0.1893245 0.06013474 prediction 0.573058147657215 Functional Loss - CCDC81 ENSG00000149201 CDS Human protein_coding chr11:86119265 chr11:86119267 nonsynonymous SNV 0.573 3 23 hm5C_associated_SNPs_56747 0 0 0 0 2 CCDC81 chr11:86119169 3'AG 86119169 Downstream 99bp
chr11 86119267 86119267 1 + G T SARC 86119265 + 86119245 86119285 41 TAGAAGATGAGAGACTCATACAGCAGTATCAGATGTTAAAG TAGAAGATGAGAGACTCATACATCAGTATCAGATGTTAAAG < 41bp 0.786529073828608 0.457346323022382 0.1893245 0.06013474 prediction 0.573058147657215 Functional Loss - CCDC81 ENSG00000149201 CDS Human protein_coding chr11:86119265 chr11:86119267 nonsynonymous SNV 0.573 3 23 hm5C_associated_SNPs_56747 0 0 0 0 2 CCDC81 chr11:86119312 5'GT 86119312 Upstream 46bp
chr11 47609632 47609632 1 + G T CESC 47609630 + 47609610 47609650 41 AGCTGGATGTCATGGGGCAGCTGCACATCCAGGATGAGGAA AGCTGGATGTCATGGGGCAGCTTCACATCCAGGATGAGGAA < 41bp 0.834807530244109 0.54827878895132 0.6172605 0.18152577 prediction 0.573057482585579 Functional Loss - FAM180B ENSG00000196666 CDS Human protein_coding chr11:47609630 chr11:47609632 synonymous SNV . 0 23 hm5C_associated_SNPs_56748 0 0 0 0 1 FAM180B chr11:47609591 3'AG 47609591 Downstream 42bp
chr15 45007818 45007818 1 + G T LUAD 45007816 + 45007796 45007836 41 TTTCTATCTCTTGTACTACACTGAATTCACCCCCACTGAAA TTTCTATCTCTTGTACTACACTTAATTCACCCCCACTGAAA < 41bp 0.820698933104911 0.53420606483073 0.14434806 0.0966005 prediction 0.572985736548362 Functional Loss - B2M ENSG00000166710 CDS Human protein_coding chr15:45007816 chr15:45007818 stopgain 0.011 0 23 hm5C_associated_SNPs_56750 0 0 1 0 1 B2M chr15:45007899 5'GT 45007899 Upstream 82bp
chr2 105706392 105706392 1 + G T SARC 105706390 + 105706370 105706410 41 TTTAACAGAGACGTGATTGGCAGCAGATGGCTGATTAAGGA TTTAACAGAGACGTGATTGGCATCAGATGGCTGATTAAGGA < 41bp 0.813289279913538 0.526812233485805 0.4374953 0.12643445 prediction 0.572954092855465 Functional Loss - MRPS9 ENSG00000135972 CDS Human protein_coding chr2:105706390 chr2:105706392 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_56752 0 0 1 0 2 MRPS9 chr2:105706378 3'AG 105706378 Downstream 15bp
chr2 105706392 105706392 1 + G T SARC 105706390 + 105706370 105706410 41 TTTAACAGAGACGTGATTGGCAGCAGATGGCTGATTAAGGA TTTAACAGAGACGTGATTGGCATCAGATGGCTGATTAAGGA < 41bp 0.813289279913538 0.526812233485805 0.4374953 0.12643445 prediction 0.572954092855465 Functional Loss - MRPS9 ENSG00000135972 CDS Human protein_coding chr2:105706390 chr2:105706392 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_56752 0 0 1 0 2 MRPS9 chr2:105706453 5'GT 105706453 Upstream 62bp
chr18 12971249 12971249 1 + A T STAD 12971245 + 12971225 12971265 41 ATTTTTGAATATAATGAAAACACCAGGTCAGTCCTGCTTTG ATTTTTGAATATAATGAAAACACCTGGTCAGTCCTGCTTTG < 41bp 0.786472058856679 0.472789354917888 0.101816535 0.08875629 prediction 0.572944117713359 Functional Loss - SEH1L ENSG00000085415 CDS Human protein_coding chr18:12971245 chr18:12971249 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_56753 0 0 1 0 2 SEH1L chr18:12971152 3'AG 12971152 Downstream 98bp
chr18 12971249 12971249 1 + A T STAD 12971245 + 12971225 12971265 41 ATTTTTGAATATAATGAAAACACCAGGTCAGTCCTGCTTTG ATTTTTGAATATAATGAAAACACCTGGTCAGTCCTGCTTTG < 41bp 0.786472058856679 0.472789354917888 0.101816535 0.08875629 prediction 0.572944117713359 Functional Loss - SEH1L ENSG00000085415 CDS Human protein_coding chr18:12971245 chr18:12971249 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_56753 0 0 1 0 2 SEH1L chr18:12971250 5'GT 12971250 Upstream 2bp
chr1 898496 898496 1 + G T LUAD 898493 + 898473 898513 41 CACCTGCCCTCCCCAGGCGGCGGGAGCCTGTTTGCCATCCA CACCTGCCCTCCCCAGGCGGCGGTAGCCTGTTTGCCATCCA < 41bp 0.786449177062016 0.410672881798054 0.86898965 0.4244627 prediction 0.572898354124032 Functional Loss - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:898493 chr1:898496 synonymous SNV . 0 24 hm5C_associated_SNPs_56755 0 0 1 0 2 KLHL17 chr1:898412 3'AG 898412 Downstream 85bp
chr1 898496 898496 1 + G T LUAD 898493 + 898473 898513 41 CACCTGCCCTCCCCAGGCGGCGGGAGCCTGTTTGCCATCCA CACCTGCCCTCCCCAGGCGGCGGTAGCCTGTTTGCCATCCA < 41bp 0.786449177062016 0.410672881798054 0.86898965 0.4244627 prediction 0.572898354124032 Functional Loss - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:898493 chr1:898496 synonymous SNV . 0 24 hm5C_associated_SNPs_56755 0 0 1 0 2 KLHL17 chr1:898489 3'AG 898489 Downstream 8bp
chrX 21887675 21887675 1 + G T UCEC 21887673 + 21887653 21887693 41 GAGACCTTGTCACCCATCTACAGGATTGTCCTGTTACTAAT GAGACCTTGTCACCCATCTACATGATTGTCCTGTTACTAAT < 41bp 0.848908642799455 0.562463292569454 0.29298204 0.103063226 prediction 0.572890700460002 Functional Loss - MBTPS2 ENSG00000012174 CDS Human protein_coding chrX:21887673 chrX:21887675 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_56756 0 0 1 0 1 MBTPS2 chrX:21887616 3'AG 21887616 Downstream 60bp
chr17 30520205 30520205 1 + G T UCEC 30520202 + 30520182 30520222 41 CCTCAAGCTCTGGAGGATGTCAAGAATGTAGTCAGAAAACA CCTCAAGCTCTGGAGGATGTCAATAATGTAGTCAGAAAACA < 41bp 0.875923806863229 0.589492514325444 0.18433002 0.104031384 prediction 0.57286258507557 Functional Loss - RHOT1 ENSG00000126858 CDS Human protein_coding chr17:30520202 chr17:30520205 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_56760 0 0 1 0 2 RHOT1 chr17:30520155 3'AG 30520155 Downstream 51bp
chr17 30520205 30520205 1 + G T UCEC 30520202 + 30520182 30520222 41 CCTCAAGCTCTGGAGGATGTCAAGAATGTAGTCAGAAAACA CCTCAAGCTCTGGAGGATGTCAATAATGTAGTCAGAAAACA < 41bp 0.875923806863229 0.589492514325444 0.18433002 0.104031384 prediction 0.57286258507557 Functional Loss - RHOT1 ENSG00000126858 CDS Human protein_coding chr17:30520202 chr17:30520205 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_56760 0 0 1 0 2 RHOT1 chr17:30520263 5'GT 30520263 Upstream 59bp
chr11 8118834 8118834 1 + G T UCEC 8118832 + 8118812 8118852 41 AACCAGTGGACGTTGAGGTCCAGGATCTTGAGGAGTTTGCA AACCAGTGGACGTTGAGGTCCATGATCTTGAGGAGTTTGCA < 41bp 0.786429228399924 0.439511063063556 0.78575957 0.44525152 prediction 0.572858456799848 Functional Loss - TUB ENSG00000166402 CDS Human protein_coding chr11:8118832 chr11:8118834 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_56761 0 0 0 0 1 TUB chr11:8118775 3'AG 8118775 Downstream 60bp
chr2 113671389 113671389 1 + G T rs184647177 113671386 + 113671366 113671406 41 CAGACCCGGCTGGAAGCCCCCTGGAACCAGGCCCAAGCCTC CAGACCCGGCTGGAAGCCCCCTGTAACCAGGCCCAAGCCTC < 41bp 0.88601234154193 0.599592165765339 0.12949577 0.020365417 prediction 0.572840351553183 Functional Loss - IL37 ENSG00000125571 CDS Human protein_coding chr2:113671386 chr2:113671389 stopgain 0.032 0 24 hm5C_associated_SNPs_56763 0 0 0 0 2 IL37 chr2:113671369 3'AG 113671369 Downstream 21bp
chr2 113671389 113671389 1 + G T rs184647177 113671386 + 113671366 113671406 41 CAGACCCGGCTGGAAGCCCCCTGGAACCAGGCCCAAGCCTC CAGACCCGGCTGGAAGCCCCCTGTAACCAGGCCCAAGCCTC < 41bp 0.88601234154193 0.599592165765339 0.12949577 0.020365417 prediction 0.572840351553183 Functional Loss - IL37 ENSG00000125571 CDS Human protein_coding chr2:113671386 chr2:113671389 stopgain 0.032 0 24 hm5C_associated_SNPs_56763 0 0 0 0 2 IL37 chr2:113671431 5'GT 113671431 Upstream 43bp
chr1 197898183 197898183 1 + G T HNSC 197898180 + 197898160 197898200 41 TCAGAAGGAACCTTTTGCGGCAGGAGAATGGGGGTGTTGAT TCAGAAGGAACCTTTTGCGGCAGTAGAATGGGGGTGTTGAT < 41bp 0.786412526676024 0.423026417007659 0.65405613 0.32666335 prediction 0.572825053352048 Functional Loss - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197898180 chr1:197898183 stopgain 1.000 1 24 hm5C_associated_SNPs_56765 0 0 0 0 1 LHX9 chr1:197898132 3'AG 197898132 Downstream 52bp
chr1 197898182 197898182 1 + G T LUAD 197898180 + 197898160 197898200 41 TCAGAAGGAACCTTTTGCGGCAGGAGAATGGGGGTGTTGAT TCAGAAGGAACCTTTTGCGGCATGAGAATGGGGGTGTTGAT < 41bp 0.786412526676024 0.469244341405918 0.65405613 0.13328692 prediction 0.572825053352048 Functional Loss - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197898180 chr1:197898182 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_56766 0 0 0 0 1 LHX9 chr1:197898132 3'AG 197898132 Downstream 51bp
chr5 139219657 139219657 1 + G T LUAD 139219655 + 139219635 139219675 41 GAATAAGTTGAGGCAGCTGACTGCGGAGCTGGCCGAACACA GAATAAGTTGAGGCAGCTGACTTCGGAGCTGGCCGAACACA < 41bp 0.786393193536148 0.452927848574117 0.45097038 0.5245025 prediction 0.572786387072295 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139219655 chr5:139219657 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_56769 0 0 0 0 2 PSD2 chr5:139219612 3'AG 139219612 Downstream 46bp
chr5 139219657 139219657 1 + G T LUAD 139219655 + 139219635 139219675 41 GAATAAGTTGAGGCAGCTGACTGCGGAGCTGGCCGAACACA GAATAAGTTGAGGCAGCTGACTTCGGAGCTGGCCGAACACA < 41bp 0.786393193536148 0.452927848574117 0.45097038 0.5245025 prediction 0.572786387072295 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139219655 chr5:139219657 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_56769 0 0 0 0 2 PSD2 chr5:139219755 5'GT 139219755 Upstream 99bp
chr12 69096532 69096532 1 + G T COAD 69096530 + 69096510 69096550 41 CCCCAGAGACAGAATACAGTCTGCATTAGAAGAGGAAAGTG CCCCAGAGACAGAATACAGTCTTCATTAGAAGAGGAAAGTG < 41bp 0.800825083182752 0.514484588707475 0.09813759 0.12630108 prediction 0.572680988950554 Functional Loss - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69096530 chr12:69096532 nonsynonymous SNV 0.966 0 23 hm5C_associated_SNPs_56778 0 0 1 0 2 NUP107 chr12:69096516 3'AG 69096516 Downstream 17bp
chr12 69096532 69096532 1 + G T COAD 69096530 + 69096510 69096550 41 CCCCAGAGACAGAATACAGTCTGCATTAGAAGAGGAAAGTG CCCCAGAGACAGAATACAGTCTTCATTAGAAGAGGAAAGTG < 41bp 0.800825083182752 0.514484588707475 0.09813759 0.12630108 prediction 0.572680988950554 Functional Loss - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69096530 chr12:69096532 nonsynonymous SNV 0.966 0 23 hm5C_associated_SNPs_56778 0 0 1 0 2 NUP107 chr12:69096564 5'GT 69096564 Upstream 33bp
chr6 170639606 170639606 1 + A T PRAD 170639602 + 170639582 170639622 41 CTGGGAACCCACTGAGGCACCCGGACCTCGTCAGGCCGCTG CTGGGAACCCACTGAGGCACCCGGTCCTCGTCAGGCCGCTG < 41bp 0.786328849772675 0.471130740584652 0.18987632 0.10427943 prediction 0.572657699545351 Functional Loss - FAM120B ENSG00000112584 CDS Human protein_coding chr6:170639602 chr6:170639606 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_56779 0 0 1 0 2 FAM120B chr6:170639537 3'AG 170639537 Downstream 70bp
chr6 170639606 170639606 1 + A T PRAD 170639602 + 170639582 170639622 41 CTGGGAACCCACTGAGGCACCCGGACCTCGTCAGGCCGCTG CTGGGAACCCACTGAGGCACCCGGTCCTCGTCAGGCCGCTG < 41bp 0.786328849772675 0.471130740584652 0.18987632 0.10427943 prediction 0.572657699545351 Functional Loss - FAM120B ENSG00000112584 CDS Human protein_coding chr6:170639602 chr6:170639606 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_56779 0 0 1 0 2 FAM120B chr6:170639638 5'GT 170639638 Upstream 33bp
chr6 170639605 170639605 1 + G T PRAD 170639602 + 170639582 170639622 41 CTGGGAACCCACTGAGGCACCCGGACCTCGTCAGGCCGCTG CTGGGAACCCACTGAGGCACCCGTACCTCGTCAGGCCGCTG < 41bp 0.786328849772675 0.396031925502821 0.18987632 0.060321122 prediction 0.572657699545351 Functional Loss - FAM120B ENSG00000112584 CDS Human protein_coding chr6:170639602 chr6:170639605 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_56780 0 0 1 0 2 FAM120B chr6:170639537 3'AG 170639537 Downstream 69bp
chr6 170639605 170639605 1 + G T PRAD 170639602 + 170639582 170639622 41 CTGGGAACCCACTGAGGCACCCGGACCTCGTCAGGCCGCTG CTGGGAACCCACTGAGGCACCCGTACCTCGTCAGGCCGCTG < 41bp 0.786328849772675 0.396031925502821 0.18987632 0.060321122 prediction 0.572657699545351 Functional Loss - FAM120B ENSG00000112584 CDS Human protein_coding chr6:170639602 chr6:170639605 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_56780 0 0 1 0 2 FAM120B chr6:170639638 5'GT 170639638 Upstream 34bp
chr12 93163926 93163926 1 + G T UCEC 93163923 + 93163903 93163943 41 TTTACCAAGAGTCAGGAAACCAAGAAAATATCTTTATTCAC TTTACCAAGAGTCAGGAAACCAATAAAATATCTTTATTCAC < 41bp 0.786327341668764 0.435040814825354 0.31400663 0.29442787 prediction 0.572654683337527 Functional Loss - PLEKHG7 ENSG00000187510 CDS Human protein_coding chr12:93163923 chr12:93163926 nonsynonymous SNV 0.849 0 24 hm5C_associated_SNPs_56782 0 0 0 0 1 PLEKHG7 chr12:93163864 3'AG 93163864 Downstream 63bp
chr19 49843549 49843549 1 + G T SKCM 49843547 + 49843527 49843567 41 CGATATTCCTGTGCAGAAACCTGGACCACGTCTACAACCGG CGATATTCCTGTGCAGAAACCTTGACCACGTCTACAACCGG < 41bp 0.845589069602265 0.559280578013627 0.31771082 0.032927126 prediction 0.572616983177275 Functional Loss - CD37 ENSG00000104894 CDS Human protein_coding chr19:49843547 chr19:49843549 synonymous SNV . 0 23 hm5C_associated_SNPs_56785 0 0 0 0 1 CD37 chr19:49843508 3'AG 49843508 Downstream 42bp
chr17 12883489 12883489 1 + G T SKCM 12883487 + 12883467 12883507 41 GGGCTCAACCTGGAGCTCAGCCGGGCGCCAGCCCCAGCCCC GGGCTCAACCTGGAGCTCAGCCTGGCGCCAGCCCCAGCCCC < 41bp 0.786307736921546 0.43334871382632 0.9002476 0.57835186 prediction 0.572615473843092 Functional Loss - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12883487 chr17:12883489 synonymous SNV . 0 23 hm5C_associated_SNPs_56786 0 0 0 0 1 ARHGAP44 chr17:12883550 5'GT 12883550 Upstream 62bp
chr1 111891167 111891167 1 + G T STAD 111891165 + 111891145 111891185 41 CACCTCATGCAGGCAGGTACCAGAAAGTAAGTCCTCAGCAG CACCTCATGCAGGCAGGTACCATAAAGTAAGTCCTCAGCAG < 41bp 0.828210947703272 0.541923313108656 0.69668376 0.44114468 prediction 0.57257526918923 Functional Loss - PIFO ENSG00000173947 CDS Human protein_coding chr1:111891165 chr1:111891167 nonsynonymous SNV 0.043 4 23 hm5C_associated_SNPs_56789 0 0 0 0 1 PIFO chr1:111891138 3'AG 111891138 Downstream 30bp
chrX 134992678 134992678 1 + G T UCEC 134992676 + 134992656 134992696 41 TCCATGGCTTCGTCATATGGCAGCAGCTGGAATTTCATCCA TCCATGGCTTCGTCATATGGCATCAGCTGGAATTTCATCCA < 41bp 0.850505530725606 0.564219854067042 0.16452289 0.05074987 prediction 0.572571353317129 Functional Loss - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134992676 chrX:134992678 nonsynonymous SNV 0.022 2 23 hm5C_associated_SNPs_56790 0 0 0 0 1 SAGE1 chrX:134992714 5'GT 134992714 Upstream 37bp
chr18 60206986 60206986 1 + G T SARC 60206983 + 60206963 60207003 41 TAGAGCAAGCTCCAATACCTCAGGACGGACTTACCGTGGCA TAGAGCAAGCTCCAATACCTCAGTACGGACTTACCGTGGCA < 41bp 0.786282991025287 0.409823697785179 0.90395284 0.2537163 prediction 0.572565982050575 Functional Loss - ZCCHC2 ENSG00000141664 CDS Human protein_coding chr18:60206983 chr18:60206986 nonsynonymous SNV 0.973 3 24 hm5C_associated_SNPs_56792 0 0 1 0 2 ZCCHC2 chr18:60206914 3'AG 60206914 Downstream 73bp
chr18 60206986 60206986 1 + G T SARC 60206983 + 60206963 60207003 41 TAGAGCAAGCTCCAATACCTCAGGACGGACTTACCGTGGCA TAGAGCAAGCTCCAATACCTCAGTACGGACTTACCGTGGCA < 41bp 0.786282991025287 0.409823697785179 0.90395284 0.2537163 prediction 0.572565982050575 Functional Loss - ZCCHC2 ENSG00000141664 CDS Human protein_coding chr18:60206983 chr18:60206986 nonsynonymous SNV 0.973 3 24 hm5C_associated_SNPs_56792 0 0 1 0 2 ZCCHC2 chr18:60207025 5'GT 60207025 Upstream 40bp
chr1 226784657 226784657 1 + G T UCEC 226784654 + 226784634 226784674 41 GGCTGGATCATGAGCATCTTCTGGGGCATGGACATGGTCAT GGCTGGATCATGAGCATCTTCTGTGGCATGGACATGGTCAT < 41bp 0.786280379274941 0.40108492189087 0.8574103 0.23311567 prediction 0.572560758549882 Functional Loss - STUM ENSG00000203685 CDS Human protein_coding chr1:226784654 chr1:226784657 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_56793 0 0 0 0 1 STUM chr1:226784682 5'GT 226784682 Upstream 26bp
chr10 134011953 134011953 1 + G T SARC 134011950 + 134011930 134011970 41 GTTGCTGGAGCTCGGCATCACTGGCCCCGAGGGCCACGTGC GTTGCTGGAGCTCGGCATCACTGTCCCCGAGGGCCACGTGC < 41bp 0.78627470562454 0.387917596805215 0.52399504 0.25316083 prediction 0.572549411249079 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134011950 chr10:134011953 nonsynonymous SNV 0.481 5 24 hm5C_associated_SNPs_56794 0 0 0 0 2 DPYSL4 chr10:134011919 3'AG 134011919 Downstream 35bp
chr10 134011953 134011953 1 + G T SARC 134011950 + 134011930 134011970 41 GTTGCTGGAGCTCGGCATCACTGGCCCCGAGGGCCACGTGC GTTGCTGGAGCTCGGCATCACTGTCCCCGAGGGCCACGTGC < 41bp 0.78627470562454 0.387917596805215 0.52399504 0.25316083 prediction 0.572549411249079 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134011950 chr10:134011953 nonsynonymous SNV 0.481 5 24 hm5C_associated_SNPs_56794 0 0 0 0 2 DPYSL4 chr10:134011987 5'GT 134011987 Upstream 35bp
chr7 48081003 48081003 1 + G T PRAD 48081000 + 48080980 48081020 41 CCCACCAGCGTCCCAGATCCCAGGTCTCAGCAATTTGGGAG CCCACCAGCGTCCCAGATCCCAGTTCTCAGCAATTTGGGAG < 41bp 0.896705692813428 0.610448930222806 0.64332014 0.31975025 prediction 0.572513525181243 Functional Loss - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48081000 chr7:48081003 nonsynonymous SNV 0.808 4 24 hm5C_associated_SNPs_56795 0 0 0 0 1 C7orf57 chr7:48080931 3'AG 48080931 Downstream 73bp
chr19 55855188 55855188 1 + G C COAD 55855184 + 55855164 55855204 41 AGCGGAGTGCTCAGCTGTGGCTGGGCCCAGCCGCCTTCATC AGCGGAGTGCTCAGCTGTGGCTGGCCCCAGCCGCCTTCATC < 41bp 0.789282524384523 0.503037740890585 0.23272726 0.07656145 prediction 0.572489566987876 Functional Loss - KMT5C ENSG00000133247 CDS Human protein_coding chr19:55855184 chr19:55855188 nonsynonymous SNV 0.170 3 25 hm5C_associated_SNPs_56798 0 0 1 0 1 KMT5C chr19:55855211 5'GT 55855211 Upstream 24bp
chr8 24208821 24208821 1 + G T UCEC 24208818 + 24208798 24208838 41 TGGTAAAGGCTGTTCAACCCCAAGAGGTGAACTATATAGTC TGGTAAAGGCTGTTCAACCCCAATAGGTGAACTATATAGTC < 41bp 0.88454840035316 0.598314226161087 0.183554 0.1086283 prediction 0.572468348384147 Functional Loss - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24208818 chr8:24208821 stopgain 0.069 0 24 hm5C_associated_SNPs_56799 0 0 0 0 2 ADAM28 chr8:24208745 3'AG 24208745 Downstream 77bp
chr8 24208821 24208821 1 + G T UCEC 24208818 + 24208798 24208838 41 TGGTAAAGGCTGTTCAACCCCAAGAGGTGAACTATATAGTC TGGTAAAGGCTGTTCAACCCCAATAGGTGAACTATATAGTC < 41bp 0.88454840035316 0.598314226161087 0.183554 0.1086283 prediction 0.572468348384147 Functional Loss - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24208818 chr8:24208821 stopgain 0.069 0 24 hm5C_associated_SNPs_56799 0 0 0 0 2 ADAM28 chr8:24208823 5'GT 24208823 Upstream 3bp
chr1 905680 905680 1 + G T SARC 905678 + 905658 905698 41 ACATCCTGGACCTGGAGAACCAGCGAGAAAACCTGGAGCAG ACATCCTGGACCTGGAGAACCATCGAGAAAACCTGGAGCAG < 41bp 0.786224086152547 0.452644561186942 0.8979327 0.15070987 prediction 0.572448172305093 Functional Loss - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:905678 chr1:905680 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_56801 0 0 1 0 1 PLEKHN1 chr1:905657 3'AG 905657 Downstream 24bp
chr9 37761979 37761979 1 + G T rs114275172 37761977 + 37761957 37761997 41 AGAAAGTAGAGTCACCTGTGCTGCAGGGGCAAGAAGGCATC AGAAAGTAGAGTCACCTGTGCTTCAGGGGCAAGAAGGCATC < 41bp 0.833392223813657 0.54716970851849 0.24177837 0.15255854 prediction 0.572445030590334 Functional Loss - TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37761977 chr9:37761979 synonymous SNV . 0 23 hm5C_associated_SNPs_56802 0 0 0 0 1 TRMT10B chr9:37761900 3'AG 37761900 Downstream 80bp
chr10 3161061 3161061 1 + G T UCEC 3161058 + 3161038 3161078 41 CTGCTGATCATCGGTGGATTCGAGGTACGTTACCGTTTCTC CTGCTGATCATCGGTGGATTCGATGTACGTTACCGTTTCTC < 41bp 0.78621664739202 0.411375095833989 0.903201 0.38690135 prediction 0.572433294784039 Functional Loss - PFKP ENSG00000067057 CDS Human protein_coding chr10:3161058 chr10:3161061 nonsynonymous SNV 0.110 4 24 hm5C_associated_SNPs_56804 0 0 1 0 2 PFKP chr10:3160974 3'AG 3160974 Downstream 88bp
chr10 3161061 3161061 1 + G T UCEC 3161058 + 3161038 3161078 41 CTGCTGATCATCGGTGGATTCGAGGTACGTTACCGTTTCTC CTGCTGATCATCGGTGGATTCGATGTACGTTACCGTTTCTC < 41bp 0.78621664739202 0.411375095833989 0.903201 0.38690135 prediction 0.572433294784039 Functional Loss - PFKP ENSG00000067057 CDS Human protein_coding chr10:3161058 chr10:3161061 nonsynonymous SNV 0.110 4 24 hm5C_associated_SNPs_56804 0 0 1 0 2 PFKP chr10:3161061 5'GT 3161061 Upstream 1bp
chr16 90110056 90110056 1 - C A UCEC 90110058 - 90110038 90110078 41 CGCGGCACTGCCCCAACCCCCAGGTGAGTGCGGGGCACTCT CGCGGCACTGCCCCAACCCCCATGTGAGTGCGGGGCACTCT < 41bp 0.786198732708553 0.45223701823842 0.9296838 0.76992583 prediction 0.572397465417105 Functional Loss - URAHP ENSG00000222019 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:90110058 chr16:90110056 . . 0 23 hm5C_associated_SNPs_56807 0 0 0 0 1 URAHP chr16:90110056 5'GT 90110056 Upstream 1bp
chr12 80645520 80645520 1 + G T COAD 80645517 + 80645497 80645537 41 CCGAGCAGCCACTGAGTATGCTAGAGCCTGCTCTCATGCTG CCGAGCAGCCACTGAGTATGCTATAGCCTGCTCTCATGCTG < 41bp 0.865561664924989 0.579376770029164 0.13847461 0.236586 prediction 0.57236978979165 Functional Loss - OTOGL ENSG00000165899 CDS Human protein_coding chr12:80645517 chr12:80645520 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_56808 0 0 0 0 2 OTOGL chr12:80645473 3'AG 80645473 Downstream 48bp
chr12 80645520 80645520 1 + G T COAD 80645517 + 80645497 80645537 41 CCGAGCAGCCACTGAGTATGCTAGAGCCTGCTCTCATGCTG CCGAGCAGCCACTGAGTATGCTATAGCCTGCTCTCATGCTG < 41bp 0.865561664924989 0.579376770029164 0.13847461 0.236586 prediction 0.57236978979165 Functional Loss - OTOGL ENSG00000165899 CDS Human protein_coding chr12:80645517 chr12:80645520 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_56808 0 0 0 0 2 OTOGL chr12:80645579 5'GT 80645579 Upstream 60bp
chr1 17548815 17548815 1 + G T LUAD 17548812 + 17548792 17548832 41 CCCAAGGGTGCCAACAGCTTCAGGGTCTCTGGAAGCTCCGG CCCAAGGGTGCCAACAGCTTCAGTGTCTCTGGAAGCTCCGG < 41bp 0.786150840068707 0.391021297233131 0.91773725 0.68654466 prediction 0.572301680137414 Functional Loss - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17548812 chr1:17548815 nonsynonymous SNV 0.931 0 24 hm5C_associated_SNPs_56816 0 0 0 0 1 PADI1 chr1:17548785 3'AG 17548785 Downstream 31bp
chr1 17548814 17548814 1 + G T LUAD 17548812 + 17548792 17548832 41 CCCAAGGGTGCCAACAGCTTCAGGGTCTCTGGAAGCTCCGG CCCAAGGGTGCCAACAGCTTCATGGTCTCTGGAAGCTCCGG < 41bp 0.786150840068707 0.431202010987892 0.91773725 0.3690428 prediction 0.572301680137414 Functional Loss - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17548812 chr1:17548814 nonsynonymous SNV 0.901 1 23 hm5C_associated_SNPs_56817 0 0 0 0 1 PADI1 chr1:17548785 3'AG 17548785 Downstream 30bp
chr3 12610439 12610439 1 + G T COAD 12610437 + 12610417 12610457 41 TTCTCACATGACTTGGCAAACAGCAAACCGTCCACCATCTG TTCTCACATGACTTGGCAAACATCAAACCGTCCACCATCTG < 41bp 0.843875911186165 0.557732719902901 0.16409475 0.098587334 prediction 0.572286382566528 Functional Loss - MKRN2 ENSG00000075975 CDS Human protein_coding chr3:12610437 chr3:12610439 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_56818 0 0 1 0 1 MKRN2 chr3:12610374 3'AG 12610374 Downstream 66bp
chr3 44879865 44879865 1 + G T ESCA 44879863 + 44879843 44879883 41 CGGGGCTGCTGCAGTCTGCCCAGGAAGAACTGACCAAGAAG CGGGGCTGCTGCAGTCTGCCCATGAAGAACTGACCAAGAAG < 41bp 0.807823238500124 0.521690143683156 0.8447985 0.14195842 prediction 0.572266189633937 Functional Loss - KIF15 ENSG00000163808 CDS Human protein_coding chr3:44879863 chr3:44879865 nonsynonymous SNV 0.993 3 23 hm5C_associated_SNPs_56821 0 0 1 0 2 KIF15 chr3:44879767 3'AG 44879767 Downstream 99bp
chr3 44879865 44879865 1 + G T ESCA 44879863 + 44879843 44879883 41 CGGGGCTGCTGCAGTCTGCCCAGGAAGAACTGACCAAGAAG CGGGGCTGCTGCAGTCTGCCCATGAAGAACTGACCAAGAAG < 41bp 0.807823238500124 0.521690143683156 0.8447985 0.14195842 prediction 0.572266189633937 Functional Loss - KIF15 ENSG00000163808 CDS Human protein_coding chr3:44879863 chr3:44879865 nonsynonymous SNV 0.993 3 23 hm5C_associated_SNPs_56821 0 0 1 0 2 KIF15 chr3:44879913 5'GT 44879913 Upstream 49bp
chr16 1291318 1291318 1 + G C LIHC 1291317 + 1291297 1291337 41 GTGCTGACCGCAGCGCACTGCGTGGGACCGTGAGTCTCCCG GTGCTGACCGCAGCGCACTGCCTGGGACCGTGAGTCTCCCG < 41bp 0.801129649343702 0.515027612440748 0.69103056 0.115234494 prediction 0.572204073805908 Functional Loss - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291317 chr16:1291318 nonsynonymous SNV 0.644 0 22 hm5C_associated_SNPs_56826 0 0 0 0 1 TPSAB1 chr16:1291325 5'GT 1291325 Upstream 8bp
chr8 91940518 91940518 1 + G T STAD 91940516 + 91940496 91940536 41 TCCAGAAATTAATTGATAGACTGGAAAAGAAGGTAGGTGCT TCCAGAAATTAATTGATAGACTTGAAAAGAAGGTAGGTGCT < 41bp 0.803129501947485 0.517032697444074 0.2873399 0.14904201 prediction 0.572193609006821 Functional Loss - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91940516 chr8:91940518 synonymous SNV . 0 23 hm5C_associated_SNPs_56828 0 0 0 0 2 NECAB1 chr8:91940451 3'AG 91940451 Downstream 68bp
chr8 91940518 91940518 1 + G T STAD 91940516 + 91940496 91940536 41 TCCAGAAATTAATTGATAGACTGGAAAAGAAGGTAGGTGCT TCCAGAAATTAATTGATAGACTTGAAAAGAAGGTAGGTGCT < 41bp 0.803129501947485 0.517032697444074 0.2873399 0.14904201 prediction 0.572193609006821 Functional Loss - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91940516 chr8:91940518 synonymous SNV . 0 23 hm5C_associated_SNPs_56828 0 0 0 0 2 NECAB1 chr8:91940527 5'GT 91940527 Upstream 10bp
chr11 67052428 67052428 1 + G T LUAD 67052425 + 67052405 67052445 41 TCTACCTGTTCCCCAACCGCCTCGAGTGGCGGGGCGAGGGC TCTACCTGTTCCCCAACCGCCTCTAGTGGCGGGGCGAGGGC < 41bp 0.883988928809085 0.597905059983186 0.7115309 0.8811324 prediction 0.5721677376518 Functional Loss - GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052425 chr11:67052428 stopgain 0.829 0 24 hm5C_associated_SNPs_56830 0 0 1 0 1 GRK2 chr11:67052454 5'GT 67052454 Upstream 27bp
chr7 44801092 44801092 1 + G T LUAD 44801089 + 44801069 44801109 41 TGCGGCTGACCTTCCCTGTGCGCGATGGGGTGGTCCTGGAG TGCGGCTGACCTTCCCTGTGCGCTATGGGGTGGTCCTGGAG < 41bp 0.786076819332844 0.393307915234885 0.34288216 0.18654773 prediction 0.572153638665688 Functional Loss - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44801089 chr7:44801092 nonsynonymous SNV 0.960 4 24 hm5C_associated_SNPs_56832 0 0 1 0 1 ZMIZ2 chr7:44801048 3'AG 44801048 Downstream 45bp
chr7 150741305 150741305 1 + G T BRCA 150741302 + 150741282 150741322 41 GTCATGGCCGATGGCCGTGTCTGGGAGGTTAGTTGTCCTGG GTCATGGCCGATGGCCGTGTCTGTGAGGTTAGTTGTCCTGG < 41bp 0.786073713719472 0.404130960428616 0.82923543 0.44277692 prediction 0.572147427438944 Functional Loss - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150741302 chr7:150741305 nonsynonymous SNV 0.924 0 24 hm5C_associated_SNPs_56833 0 0 0 0 1 ABCB8 chr7:150741308 5'GT 150741308 Upstream 4bp
chr11 65687838 65687838 1 + G T LUAD 65687836 + 65687816 65687856 41 AGCAGTGCATCGAGCTGGAGCAGCAGTTTGACTTCTTGAAG AGCAGTGCATCGAGCTGGAGCATCAGTTTGACTTCTTGAAG < 41bp 0.786064349143167 0.461734842590407 0.4382348 0.20882678 prediction 0.572128698286334 Functional Loss - DRAP1 ENSG00000175550 CDS Human protein_coding chr11:65687836 chr11:65687838 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_56837 0 0 1 0 2 DRAP1 chr11:65687814 3'AG 65687814 Downstream 25bp
chr11 65687838 65687838 1 + G T LUAD 65687836 + 65687816 65687856 41 AGCAGTGCATCGAGCTGGAGCAGCAGTTTGACTTCTTGAAG AGCAGTGCATCGAGCTGGAGCATCAGTTTGACTTCTTGAAG < 41bp 0.786064349143167 0.461734842590407 0.4382348 0.20882678 prediction 0.572128698286334 Functional Loss - DRAP1 ENSG00000175550 CDS Human protein_coding chr11:65687836 chr11:65687838 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_56837 0 0 1 0 2 DRAP1 chr11:65687933 5'GT 65687933 Upstream 96bp
chr12 81102367 81102367 1 + G T UCEC 81102364 + 81102344 81102384 41 GCCAAGTGTTTCCGATCATTCCAGGGGGCTCGTGATAACGG GCCAAGTGTTTCCGATCATTCCATGGGGCTCGTGATAACGG < 41bp 0.786043113718805 0.408657259931811 0.90931535 0.4740819 prediction 0.57208622743761 Functional Loss - MYF6 ENSG00000111046 CDS Human protein_coding chr12:81102364 chr12:81102367 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_56839 0 0 0 0 2 MYF6 chr12:81102303 3'AG 81102303 Downstream 65bp
chr12 81102367 81102367 1 + G T UCEC 81102364 + 81102344 81102384 41 GCCAAGTGTTTCCGATCATTCCAGGGGGCTCGTGATAACGG GCCAAGTGTTTCCGATCATTCCATGGGGCTCGTGATAACGG < 41bp 0.786043113718805 0.408657259931811 0.90931535 0.4740819 prediction 0.57208622743761 Functional Loss - MYF6 ENSG00000111046 CDS Human protein_coding chr12:81102364 chr12:81102367 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_56839 0 0 0 0 2 MYF6 chr12:81102393 5'GT 81102393 Upstream 27bp
chr12 69109430 69109430 1 + G T UCEC 69109428 + 69109408 69109448 41 ACCCTGATGCTCCCATAAGACAGAAAATGCCCCTTGATGAT ACCCTGATGCTCCCATAAGACATAAAATGCCCCTTGATGAT < 41bp 0.786027738532513 0.468831197812081 0.02910012 0.009833425 prediction 0.572055477065025 Functional Loss - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69109428 chr12:69109430 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_56840 0 0 1 0 2 NUP107 chr12:69109407 3'AG 69109407 Downstream 24bp
chr12 69109430 69109430 1 + G T UCEC 69109428 + 69109408 69109448 41 ACCCTGATGCTCCCATAAGACAGAAAATGCCCCTTGATGAT ACCCTGATGCTCCCATAAGACATAAAATGCCCCTTGATGAT < 41bp 0.786027738532513 0.468831197812081 0.02910012 0.009833425 prediction 0.572055477065025 Functional Loss - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69109428 chr12:69109430 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_56840 0 0 1 0 2 NUP107 chr12:69109520 5'GT 69109520 Upstream 91bp
chr1 55277781 55277781 1 + A T SKCM 55277777 + 55277757 55277797 41 CGACCTTGAGACATATGTGGCACGATCCGTCGGCACCCGCG CGACCTTGAGACATATGTGGCACGTTCCGTCGGCACCCGCG < 41bp 0.827150988474801 0.541145705277024 0.07195616 0.103562534 prediction 0.572010566395555 Functional Loss - LEXM ENSG00000162398 CDS Human protein_coding chr1:55277777 chr1:55277781 synonymous SNV . 0 25 hm5C_associated_SNPs_56844 0 0 0 0 2 LEXM chr1:55277719 3'AG 55277719 Downstream 63bp
chr1 55277781 55277781 1 + A T SKCM 55277777 + 55277757 55277797 41 CGACCTTGAGACATATGTGGCACGATCCGTCGGCACCCGCG CGACCTTGAGACATATGTGGCACGTTCCGTCGGCACCCGCG < 41bp 0.827150988474801 0.541145705277024 0.07195616 0.103562534 prediction 0.572010566395555 Functional Loss - LEXM ENSG00000162398 CDS Human protein_coding chr1:55277777 chr1:55277781 synonymous SNV . 0 25 hm5C_associated_SNPs_56844 0 0 0 0 2 LEXM chr1:55277862 5'GT 55277862 Upstream 82bp
chrX 135618294 135618294 1 + A T LUAD 135618290 + 135618270 135618310 41 ACCTACTTCCAAGGGGACATCAGCAGCGTAGTGGATGAACA ACCTACTTCCAAGGGGACATCAGCTGCGTAGTGGATGAACA < 41bp 0.842838341942905 0.556838741428945 0.2705491 0.41705206 prediction 0.571999201027919 Functional Loss - VGLL1 ENSG00000102243 CDS Human protein_coding chrX:135618290 chrX:135618294 nonsynonymous SNV 0.568 3 25 hm5C_associated_SNPs_56845 0 0 0 0 1 VGLL1 chrX:135618393 5'GT 135618393 Upstream 100bp
chr1 154227733 154227733 1 + A C LUSC 154227729 + 154227709 154227749 41 CCTTACTGACGACAACCAATCAGCATTCATCCTCCTTGGGT CCTTACTGACGACAACCAATCAGCCTTCATCCTCCTTGGGT < 41bp 0.785987408254619 0.388126283784794 0.64128596 0.25421643 prediction 0.571974816509239 Functional Loss - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154227729 chr1:154227733 nonsynonymous SNV 0.985 3 25 hm5C_associated_SNPs_56846 0 0 1 0 1 UBAP2L chr1:154227802 5'GT 154227802 Upstream 70bp
chr9 132395042 132395042 1 + G T UCEC 132395039 + 132395019 132395059 41 TATTCCAAGGCCAAGACCTACTGGAAACAAATCCCACCCAC TATTCCAAGGCCAAGACCTACTGTAAACAAATCCCACCCAC < 41bp 0.884699183220465 0.59871723147269 0.5249617 0.12633738 prediction 0.571963903495551 Functional Loss - NTMT1 ENSG00000148335 CDS Human protein_coding chr9:132395039 chr9:132395042 nonsynonymous SNV 0.955 4 24 hm5C_associated_SNPs_56847 0 0 1 0 1 NTMT1 chr9:132395080 5'GT 132395080 Upstream 39bp
chr20 47849940 47849940 1 + G C CESC 47849939 + 47849919 47849959 41 TTCTCGGCCACCATGACAGACGAGGTGGGCCGAGGGACTTC TTCTCGGCCACCATGACAGACCAGGTGGGCCGAGGGACTTC < 41bp 0.805431401769755 0.519477858440568 0.88370645 0.7379895 prediction 0.571907086658375 Functional Loss - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47849939 chr20:47849940 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_56850 0 0 0 0 2 DDX27 chr20:47849843 3'AG 47849843 Downstream 98bp
chr20 47849940 47849940 1 + G C CESC 47849939 + 47849919 47849959 41 TTCTCGGCCACCATGACAGACGAGGTGGGCCGAGGGACTTC TTCTCGGCCACCATGACAGACCAGGTGGGCCGAGGGACTTC < 41bp 0.805431401769755 0.519477858440568 0.88370645 0.7379895 prediction 0.571907086658375 Functional Loss - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47849939 chr20:47849940 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_56850 0 0 0 0 2 DDX27 chr20:47849942 5'GT 47849942 Upstream 3bp
chr8 38810885 38810885 1 + G T LUAD 38810882 + 38810862 38810902 41 CCATGAATGTCTGGTCAAGTCTGGGTAATTGTGTCTGCTTT CCATGAATGTCTGGTCAAGTCTGTGTAATTGTGTCTGCTTT < 41bp 0.785949811476835 0.410121649101079 0.3428321 0.091204375 prediction 0.571899622953669 Functional Loss - PLEKHA2 ENSG00000169499 CDS Human protein_coding chr8:38810882 chr8:38810885 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_56851 0 0 1 0 2 PLEKHA2 chr8:38810815 3'AG 38810815 Downstream 71bp
chr8 38810885 38810885 1 + G T LUAD 38810882 + 38810862 38810902 41 CCATGAATGTCTGGTCAAGTCTGGGTAATTGTGTCTGCTTT CCATGAATGTCTGGTCAAGTCTGTGTAATTGTGTCTGCTTT < 41bp 0.785949811476835 0.410121649101079 0.3428321 0.091204375 prediction 0.571899622953669 Functional Loss - PLEKHA2 ENSG00000169499 CDS Human protein_coding chr8:38810882 chr8:38810885 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_56851 0 0 1 0 2 PLEKHA2 chr8:38810885 5'GT 38810885 Upstream 1bp
chr9 77275607 77275607 1 + G T SARC 77275604 + 77275584 77275624 41 CCATGGAAGAGCTGCACCAGCTGGCGTGGCAGACCCACACC CCATGGAAGAGCTGCACCAGCTGTCGTGGCAGACCCACACC < 41bp 0.785949600988323 0.40003690512382 0.2975611 0.11290562 prediction 0.571899201976646 Functional Loss - RORB ENSG00000198963 CDS Human protein_coding chr9:77275604 chr9:77275607 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_56852 0 0 0 0 2 RORB chr9:77275533 3'AG 77275533 Downstream 75bp
chr9 77275607 77275607 1 + G T SARC 77275604 + 77275584 77275624 41 CCATGGAAGAGCTGCACCAGCTGGCGTGGCAGACCCACACC CCATGGAAGAGCTGCACCAGCTGTCGTGGCAGACCCACACC < 41bp 0.785949600988323 0.40003690512382 0.2975611 0.11290562 prediction 0.571899201976646 Functional Loss - RORB ENSG00000198963 CDS Human protein_coding chr9:77275604 chr9:77275607 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_56852 0 0 0 0 2 RORB chr9:77275654 5'GT 77275654 Upstream 48bp
chr10 12238281 12238281 1 + G C LGG 12238280 + 12238260 12238300 41 GTGCTTCACTGCCAGTTCTCCGCGTGGTACCCGTTCTTCCG GTGCTTCACTGCCAGTTCTCCCCGTGGTACCCGTTCTTCCG < 41bp 0.789804024408177 0.503876369794741 0.86566824 0.7538872 prediction 0.571855309226872 Functional Loss - CDC123 ENSG00000151465 CDS Human protein_coding chr10:12238280 chr10:12238281 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_56857 0 0 1 0 1 CDC123 chr10:12238318 5'GT 12238318 Upstream 38bp
chr18 12014356 12014356 1 + G T LUSC 12014354 + 12014334 12014374 41 TCTGCAATGGCCAGCGGCTCCGGGTCTCCGGGGAGACAGGT TCTGCAATGGCCAGCGGCTCCGTGTCTCCGGGGAGACAGGT < 41bp 0.785926870485228 0.441338060137212 0.90569675 0.2294586 prediction 0.571853740970455 Functional Loss - IMPA2 ENSG00000141401 CDS Human protein_coding chr18:12014354 chr18:12014356 synonymous SNV . 0 23 hm5C_associated_SNPs_56858 0 0 1 0 2 IMPA2 chr18:12014264 3'AG 12014264 Downstream 93bp
chr18 12014356 12014356 1 + G T LUSC 12014354 + 12014334 12014374 41 TCTGCAATGGCCAGCGGCTCCGGGTCTCCGGGGAGACAGGT TCTGCAATGGCCAGCGGCTCCGTGTCTCCGGGGAGACAGGT < 41bp 0.785926870485228 0.441338060137212 0.90569675 0.2294586 prediction 0.571853740970455 Functional Loss - IMPA2 ENSG00000141401 CDS Human protein_coding chr18:12014354 chr18:12014356 synonymous SNV . 0 23 hm5C_associated_SNPs_56858 0 0 1 0 2 IMPA2 chr18:12014372 5'GT 12014372 Upstream 17bp
chr1 200008804 200008804 1 + G C ACC 200008803 + 200008783 200008823 41 CAGGTGCTGGGCTTCCGGACCGACACGGATCCCCCATCCCC CAGGTGCTGGGCTTCCGGACCCACACGGATCCCCCATCCCC < 41bp 0.785912912119475 0.480201618279378 0.271231 0.16703019 prediction 0.571825824238951 Functional Loss - NR5A2 ENSG00000116833 CDS Human protein_coding chr1:200008803 chr1:200008804 nonsynonymous SNV 0.243 1 22 hm5C_associated_SNPs_56859 0 0 0 0 1 NR5A2 chr1:200008786 3'AG 200008786 Downstream 19bp
chr2 234255459 234255459 1 + G T UCEC 234255457 + 234255437 234255477 41 GTTTGTTTTATTTTAGTTATCAGGATGCAAATTTAGTTTTT GTTTGTTTTATTTTAGTTATCATGATGCAAATTTAGTTTTT < 41bp 0.785911397537837 0.486827453193779 0.912485 0.68432426 prediction 0.571822795075674 Functional Loss - SAG ENSG00000130561 CDS Human protein_coding chr2:234255457 chr2:234255459 nonsynonymous SNV 0.964 0 23 hm5C_associated_SNPs_56860 0 0 0 0 1 SAG chr2:234255453 3'AG 234255453 Downstream 7bp
chr5 80551012 80551012 1 + G T UCEC 80551010 + 80550990 80551030 41 AGCTGTCCGAGATGACGGAGCAGGACCAGCAGCGGCTCATC AGCTGTCCGAGATGACGGAGCATGACCAGCAGCGGCTCATC < 41bp 0.845246862728715 0.559338285271684 0.8442828 0.13602504 prediction 0.571817154914061 Functional Loss - CKMT2 ENSG00000131730 CDS Human protein_coding chr5:80551010 chr5:80551012 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_56861 0 0 0 0 1 CKMT2 chr5:80551033 5'GT 80551033 Upstream 22bp
chr12 34175620 34175620 1 + G T HNSC 34175618 + 34175598 34175638 41 CTCCTCTTCTCCGCCTTCAGCCGGGCGTTGCGAGAGCCCTA CTCCTCTTCTCCGCCTTCAGCCTGGCGTTGCGAGAGCCCTA < 41bp 0.785874144378002 0.447879073663681 0.9039496 0.14496577 prediction 0.571748288756005 Functional Loss - ALG10 ENSG00000139133 CDS Human protein_coding chr12:34175618 chr12:34175620 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_56863 0 0 0 0 1 ALG10 chr12:34175705 5'GT 34175705 Upstream 86bp
chr9 34659774 34659774 1 + G T LUSC 34659771 + 34659751 34659791 41 CCCAGGTGGAGCCAGCTGGACTGGAGGAGGTGATCACAGAT CCCAGGTGGAGCCAGCTGGACTGTAGGAGGTGATCACAGAT < 41bp 0.785868446944694 0.427985360267505 0.7906269 0.28987157 prediction 0.571736893889388 Functional Loss - IL11RA ENSG00000137070 CDS Human protein_coding chr9:34659771 chr9:34659774 stopgain 1.000 0 24 hm5C_associated_SNPs_56864 0 0 0 0 1 IL11RA chr9:34659756 3'AG 34659756 Downstream 19bp
chr1 2489885 2489885 1 + G T BLCA 2489883 + 2489863 2489903 41 TCAATGGCCTAAGCAAGTGTCTGCAGTGCCAAATGTGTGAC TCAATGGCCTAAGCAAGTGTCTTCAGTGCCAAATGTGTGAC < 41bp 0.785858219925131 0.490355213080872 0.28263444 0.11539978 prediction 0.571716439850261 Functional Loss - TNFRSF14 ENSG00000157873 CDS Human protein_coding chr1:2489883 chr1:2489885 synonymous SNV . 0 23 hm5C_associated_SNPs_56868 0 0 1 0 1 TNFRSF14 chr1:2489907 5'GT 2489907 Upstream 23bp
chr16 5127960 5127960 1 + G T rs145158686 5127957 + 5127937 5127977 41 CTTTCTTTAAAGAGACACCTCTGGACCTGCAGCACCGGCTC CTTTCTTTAAAGAGACACCTCTGTACCTGCAGCACCGGCTC < 41bp 0.90540435868088 0.619558141356916 0.7371426 0.3226717 prediction 0.571692434647927 Functional Loss - ALG1 ENSG00000033011 CDS Human protein_coding chr16:5127957 chr16:5127960 nonsynonymous SNV 0.271 1 24 hm5C_associated_SNPs_56869 1 0 1 0 2 ALG1 chr16:5127908 3'AG 5127908 Downstream 53bp
chr16 5127960 5127960 1 + G T rs145158686 5127957 + 5127937 5127977 41 CTTTCTTTAAAGAGACACCTCTGGACCTGCAGCACCGGCTC CTTTCTTTAAAGAGACACCTCTGTACCTGCAGCACCGGCTC < 41bp 0.90540435868088 0.619558141356916 0.7371426 0.3226717 prediction 0.571692434647927 Functional Loss - ALG1 ENSG00000033011 CDS Human protein_coding chr16:5127957 chr16:5127960 nonsynonymous SNV 0.271 1 24 hm5C_associated_SNPs_56869 1 0 1 0 2 ALG1 chr16:5128018 5'GT 5128018 Upstream 59bp
chr15 69327747 69327747 1 + A T LUAD 69327743 + 69327723 69327763 41 GCTGCGGGCCACGTGGCTGGCTCAAGTCCTACCACTGGACC GCTGCGGGCCACGTGGCTGGCTCATGTCCTACCACTGGACC < 41bp 0.78583871172878 0.459450732925875 0.14914104 0.056820482 prediction 0.57167742345756 Functional Loss - NOX5 ENSG00000255346 CDS Human protein_coding chr15:69327743 chr15:69327747 nonsynonymous SNV 0.989 2 25 hm5C_associated_SNPs_56870 0 0 0 0 1 NOX5 chr15:69327694 3'AG 69327694 Downstream 54bp
chr1 9778850 9778850 1 + G T SARC 9778848 + 9778828 9778868 41 GCTCGGAGCCCGTGTGGAAGCAGCGGCTGGAGTTCGACATC GCTCGGAGCCCGTGTGGAAGCATCGGCTGGAGTTCGACATC < 41bp 0.859271550403402 0.573436433283331 0.40595862 0.14988455 prediction 0.571670234240141 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9778848 chr1:9778850 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_56871 0 0 0 0 1 PIK3CD chr1:9778752 3'AG 9778752 Downstream 99bp
chr2 33500152 33500152 1 + G T LUAD 33500150 + 33500130 33500170 41 GCCAGTGAGGAGGGTACTAACTGCATAGGTAATGGCAGCAT GCCAGTGAGGAGGGTACTAACTTCATAGGTAATGGCAGCAT < 41bp 0.799292299398296 0.513457317657839 0.41696656 0.4418278 prediction 0.571669963480915 Functional Loss - LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33500150 chr2:33500152 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_56872 0 0 0 0 1 LTBP1 chr2:33500157 5'GT 33500157 Upstream 6bp
chrX 140984747 140984747 1 + G T UCEC 140984744 + 140984724 140984764 41 ATTCCTCCCCAGGGTCCTCCCAAGATCTCTCCCCAGGGTCC ATTCCTCCCCAGGGTCCTCCCAATATCTCTCCCCAGGGTCC < 41bp 0.904896047207629 0.6190685660746 0.40619826 0.096381575 prediction 0.571654962266058 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140984744 chrX:140984747 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_56873 0 0 0 0 1 MAGEC3 chrX:140984668 3'AG 140984668 Downstream 80bp
chr7 56049250 56049250 1 + G T LUAD 56049248 + 56049228 56049268 41 GGAACACGTGGTATGGCGAGCAGGACCAAGCTGGTAGGAAG GGAACACGTGGTATGGCGAGCATGACCAAGCTGGTAGGAAG < 41bp 0.785826257674937 0.471557637635094 0.8252965 0.43062514 prediction 0.571652515349873 Functional Loss - NIPSNAP2 ENSG00000146729 CDS Human protein_coding chr7:56049248 chr7:56049250 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_56874 0 0 1 0 2 NIPSNAP2 chr7:56049166 3'AG 56049166 Downstream 85bp
chr7 56049250 56049250 1 + G T LUAD 56049248 + 56049228 56049268 41 GGAACACGTGGTATGGCGAGCAGGACCAAGCTGGTAGGAAG GGAACACGTGGTATGGCGAGCATGACCAAGCTGGTAGGAAG < 41bp 0.785826257674937 0.471557637635094 0.8252965 0.43062514 prediction 0.571652515349873 Functional Loss - NIPSNAP2 ENSG00000146729 CDS Human protein_coding chr7:56049248 chr7:56049250 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_56874 0 0 1 0 2 NIPSNAP2 chr7:56049260 5'GT 56049260 Upstream 11bp
chr19 42354737 42354737 1 + G T UCEC 42354734 + 42354714 42354754 41 TCTGTGCCCCCCAACCCTGCCTGGATCTCCCTGCTTCACCC TCTGTGCCCCCCAACCCTGCCTGTATCTCCCTGCTTCACCC < 41bp 0.892340268498256 0.60652284864725 0.48393807 0.0792377 prediction 0.571634839702012 Functional Loss - DMRTC2 ENSG00000142025 CDS Human protein_coding chr19:42354734 chr19:42354737 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_56875 0 0 0 0 1 DMRTC2 chr19:42354768 5'GT 42354768 Upstream 32bp
chr10 126515219 126515219 1 + G T UCEC 126515217 + 126515197 126515237 41 ACGCAGCAGCAGATGTCCTACAGAGAGCAGGTTCTTCACAA ACGCAGCAGCAGATGTCCTACATAGAGCAGGTTCTTCACAA < 41bp 0.856996427276485 0.571188746295526 0.3536711 0.1614554 prediction 0.571615361961919 Functional Loss - ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126515217 chr10:126515219 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_56876 0 0 0 0 1 ABRAXAS2 chr10:126515164 3'AG 126515164 Downstream 56bp
chr17 41007587 41007587 1 + A T CESC 41007583 + 41007563 41007603 41 CATCAACAATGAGACCATTGCTGGAAAGGTCAGCTGGCCGG CATCAACAATGAGACCATTGCTGGTAAGGTCAGCTGGCCGG < 41bp 0.796796351669649 0.510999383301447 0.4042595 0.273794 prediction 0.571593936736403 Functional Loss - AOC3 ENSG00000131471 CDS Human protein_coding chr17:41007583 chr17:41007587 synonymous SNV . 0 25 hm5C_associated_SNPs_56878 0 0 0 0 1 AOC3 chr17:41007590 5'GT 41007590 Upstream 4bp
chr1 28887893 28887893 1 + G T CESC 28887890 + 28887870 28887910 41 AAACTGAACTATGCCACTTACGGGAAACAACCAGATAACAG AAACTGAACTATGCCACTTACGGTAAACAACCAGATAACAG < 41bp 0.879469757737492 0.593678962487561 0.5555345 0.09298545 prediction 0.571581590499863 Functional Loss - TRNAU1AP ENSG00000180098 CDS Human protein_coding chr1:28887890 chr1:28887893 synonymous SNV . 0 24 hm5C_associated_SNPs_56880 0 0 1 0 2 TRNAU1AP chr1:28887858 3'AG 28887858 Downstream 36bp
chr1 28887893 28887893 1 + G T CESC 28887890 + 28887870 28887910 41 AAACTGAACTATGCCACTTACGGGAAACAACCAGATAACAG AAACTGAACTATGCCACTTACGGTAAACAACCAGATAACAG < 41bp 0.879469757737492 0.593678962487561 0.5555345 0.09298545 prediction 0.571581590499863 Functional Loss - TRNAU1AP ENSG00000180098 CDS Human protein_coding chr1:28887890 chr1:28887893 synonymous SNV . 0 24 hm5C_associated_SNPs_56880 0 0 1 0 2 TRNAU1AP chr1:28887910 5'GT 28887910 Upstream 18bp
chr1 202140526 202140526 1 + G T CESC 202140523 + 202140503 202140543 41 TCTGGAGCTGAAGGTCCTAGCGGGGCCATATGACGCCTGGG TCTGGAGCTGAAGGTCCTAGCGGTGCCATATGACGCCTGGG < 41bp 0.878263794188397 0.592483869903523 0.95225227 0.8572265 prediction 0.571559848569746 Functional Loss - PTPRVP ENSG00000243323 ncRNA_exonic Human processed_transcript chr1:202140523 chr1:202140526 . . 0 24 hm5C_associated_SNPs_56881 0 0 0 0 1 PTPRVP chr1:202140567 5'GT 202140567 Upstream 42bp
chr2 238536350 238536350 1 + G C rs539618279 238536349 + 238536329 238536369 41 CAACCGGGAGCGGCTCACGGCGGAGGACGACGCGCTCAACC CAACCGGGAGCGGCTCACGGCCGAGGACGACGCGCTCAACC < 41bp 0.788310817792876 0.502536442188313 0.5786424 0.10766539 prediction 0.571548751209125 Functional Loss - LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238536349 chr2:238536350 synonymous SNV . 0 22 hm5C_associated_SNPs_56882 0 0 1 0 1 LRRFIP1 chr2:238536383 5'GT 238536383 Upstream 34bp
chr19 6531242 6531242 1 + G C rs201443100 6531241 + 6531221 6531261 41 TCGCGCCTCGCCCGGCTCCGCGGCCAGCCCGAGACTCCGCG TCGCGCCTCGCCCGGCTCCGCCGCCAGCCCGAGACTCCGCG < 41bp 0.792365502534362 0.506600094944036 0.85681087 0.6113495 prediction 0.571530815180652 Functional Loss - TNFSF9 ENSG00000125657 CDS Human protein_coding chr19:6531241 chr19:6531242 synonymous SNV . 0 22 hm5C_associated_SNPs_56884 0 0 0 0 1 TNFSF9 chr19:6531314 5'GT 6531314 Upstream 73bp
chr3 185686489 185686489 1 + G T UCEC 185686486 + 185686466 185686506 41 ACTTCTGGGACCCTCTCAACCAAGATAAGGAAGTGTGTCGG ACTTCTGGGACCCTCTCAACCAATATAAGGAAGTGTGTCGG < 41bp 0.865316961395462 0.579552373915248 0.7690857 0.27304566 prediction 0.571529174960428 Functional Loss - NMRAL2P ENSG00000171658 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:185686486 chr3:185686489 . . 0 24 hm5C_associated_SNPs_56885 0 0 0 0 1 NMRAL2P chr3:185686506 5'GT 185686506 Upstream 18bp
chr3 52544015 52544015 1 + G T THYM 52544012 + 52543992 52544032 41 CATGGGGGACTGTGGGCCCACAGGGCTGGCCCAGCACTGCC CATGGGGGACTGTGGGCCCACAGTGCTGGCCCAGCACTGCC < 41bp 0.785749344042649 0.419692620694801 0.90865934 0.4167931 prediction 0.571498688085297 Functional Loss - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52544012 chr3:52544015 nonsynonymous SNV 0.354 3 24 hm5C_associated_SNPs_56888 0 0 0 0 1 STAB1 chr3:52544072 5'GT 52544072 Upstream 58bp
chr4 3251269 3251269 1 + G T COAD 3251267 + 3251247 3251287 41 ACCAACATGACCTTCCAGTACAGGTGGGCGAGCGGGCAGTG ACCAACATGACCTTCCAGTACATGTGGGCGAGCGGGCAGTG < 41bp 0.856246354771662 0.570515416923996 0.28338918 0.27571857 prediction 0.571461875695331 Functional Loss - MSANTD1 ENSG00000188981 CDS Human protein_coding chr4:3251267 chr4:3251269 nonsynonymous SNV 0.896 4 23 hm5C_associated_SNPs_56889 0 0 0 0 1 MSANTD1 chr4:3251269 5'GT 3251269 Upstream 1bp
chr16 1547465 1547465 1 + G T LUAD 1547463 + 1547443 1547483 41 TGGTGGAGCAAGTGCCGGACCGGGCCATGGAGGCTGTGCTG TGGTGGAGCAAGTGCCGGACCGTGCCATGGAGGCTGTGCTG < 41bp 0.785727797517476 0.448778264769042 0.864181 0.20745 prediction 0.571455595034953 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1547463 chr16:1547465 synonymous SNV . 0 23 hm5C_associated_SNPs_56890 0 0 1 0 1 TELO2 chr16:1547509 5'GT 1547509 Upstream 45bp
chr19 2987728 2987728 1 + G T BRCA 2987725 + 2987705 2987745 41 ACTTTTCCATTTTCCAGGGGCAGGAAAGCAAGGCACCAGGA ACTTTTCCATTTTCCAGGGGCAGTAAAGCAAGGCACCAGGA < 41bp 0.785727575628774 0.399856714881137 0.70925 0.67998236 prediction 0.571455151257548 Functional Loss - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2987725 chr19:2987728 stopgain 0.086 0 24 hm5C_associated_SNPs_56891 0 0 0 0 2 TLE6 chr19:2987722 3'AG 2987722 Downstream 7bp
chr19 2987728 2987728 1 + G T BRCA 2987725 + 2987705 2987745 41 ACTTTTCCATTTTCCAGGGGCAGGAAAGCAAGGCACCAGGA ACTTTTCCATTTTCCAGGGGCAGTAAAGCAAGGCACCAGGA < 41bp 0.785727575628774 0.399856714881137 0.70925 0.67998236 prediction 0.571455151257548 Functional Loss - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2987725 chr19:2987728 stopgain 0.086 0 24 hm5C_associated_SNPs_56891 0 0 0 0 2 TLE6 chr19:2987788 5'GT 2987788 Upstream 61bp
chr6 18399888 18399888 1 + G T SARC 18399885 + 18399865 18399905 41 CTGTGTGAGCAGTCTCTGGACAAGATGACCACACTCCAGGA CTGTGTGAGCAGTCTCTGGACAATATGACCACACTCCAGGA < 41bp 0.89160132340056 0.605884759486948 0.10795787 0.032046854 prediction 0.571433127827225 Functional Loss - RNF144B ENSG00000137393 CDS Human protein_coding chr6:18399885 chr6:18399888 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_56893 0 0 1 0 1 RNF144B chr6:18399930 5'GT 18399930 Upstream 43bp
chr14 57752976 57752976 1 + A C UCEC 57752972 + 57752952 57752992 41 GATCTTAGATTACACACTTACTGGATGTTATGCAGATCAGC GATCTTAGATTACACACTTACTGGCTGTTATGCAGATCAGC < 41bp 0.785711992471226 0.390192576047295 0.33885 0.15484169 prediction 0.571423984942451 Functional Loss - AP5M1 ENSG00000053770 CDS Human protein_coding chr14:57752972 chr14:57752976 synonymous SNV . 0 25 hm5C_associated_SNPs_56894 0 0 1 0 2 AP5M1 chr14:57752941 3'AG 57752941 Downstream 36bp
chr14 57752976 57752976 1 + A C UCEC 57752972 + 57752952 57752992 41 GATCTTAGATTACACACTTACTGGATGTTATGCAGATCAGC GATCTTAGATTACACACTTACTGGCTGTTATGCAGATCAGC < 41bp 0.785711992471226 0.390192576047295 0.33885 0.15484169 prediction 0.571423984942451 Functional Loss - AP5M1 ENSG00000053770 CDS Human protein_coding chr14:57752972 chr14:57752976 synonymous SNV . 0 25 hm5C_associated_SNPs_56894 0 0 1 0 2 AP5M1 chr14:57753037 5'GT 57753037 Upstream 62bp
chr19 7570993 7570993 1 + G T COAD 7570991 + 7570971 7571011 41 ACTGCCCTTCAGAGTGGAGACAGGTGCAGAAAGCGCCCAAC ACTGCCCTTCAGAGTGGAGACATGTGCAGAAAGCGCCCAAC < 41bp 0.865196546871318 0.579486316278944 0.7405873 0.3030008 prediction 0.571420461184748 Functional Loss - TEX45 ENSG00000198723 CDS Human protein_coding chr19:7570991 chr19:7570993 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_56895 0 0 0 0 1 TEX45 chr19:7571051 5'GT 7571051 Upstream 59bp
chr7 20441389 20441389 1 + G T UCEC 20441387 + 20441367 20441407 41 AATGAAAAAATGTGATGTCACAGGAGGAAAAAACTATGCAA AATGAAAAAATGTGATGTCACATGAGGAAAAAACTATGCAA < 41bp 0.785694404034077 0.479760710790248 0.74277204 0.4642365 prediction 0.571388808068155 Functional Loss - ITGB8 ENSG00000105855 CDS Human protein_coding chr7:20441387 chr7:20441389 stopgain 0.993 0 23 hm5C_associated_SNPs_56900 0 0 0 0 1 ITGB8 chr7:20441344 3'AG 20441344 Downstream 46bp
chr1 40758182 40758182 1 + G T UCEC 40758179 + 40758159 40758199 41 TTTCAAGCTGATGCATTTGCCAAGAAACTTGGGAAGGCTAA TTTCAAGCTGATGCATTTGCCAATAAACTTGGGAAGGCTAA < 41bp 0.785682392541842 0.453264431099847 0.5636852 0.24335593 prediction 0.571364785083684 Functional Loss - ZMPSTE24 ENSG00000084073 CDS Human protein_coding chr1:40758179 chr1:40758182 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_56901 0 0 1 0 1 ZMPSTE24 chr1:40758117 3'AG 40758117 Downstream 66bp
chr1 77987628 77987628 1 + G T HNSC 77987625 + 77987605 77987645 41 CAAGGGGAAGAGTTCGGACGCAGGGTGAGTGGTTGTTACGG CAAGGGGAAGAGTTCGGACGCAGTGTGAGTGGTTGTTACGG < 41bp 0.785680705683012 0.409698452691986 0.9358938 0.6858972 prediction 0.571361411366024 Functional Loss - AK5 ENSG00000154027 CDS Human protein_coding chr1:77987625 chr1:77987628 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_56902 0 0 0 0 1 AK5 chr1:77987628 3'AG 77987628 Downstream 1bp
chr6 36993702 36993702 1 + G T UCEC 36993700 + 36993680 36993720 41 AGGCCAAGGAGGACAAGAGGCGGGGCATCCTGGAGGTGAGG AGGCCAAGGAGGACAAGAGGCGTGGCATCCTGGAGGTGAGG < 41bp 0.785671822135052 0.42995346542802 0.8868568 0.36123055 prediction 0.571343644270103 Functional Loss - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36993700 chr6:36993702 synonymous SNV . 0 23 hm5C_associated_SNPs_56903 0 0 0 0 1 FGD2 chr6:36993714 5'GT 36993714 Upstream 13bp
chr3 46937299 46937299 1 + G T HNSC 46937297 + 46937277 46937317 41 GCCCAGGAAAGATAAGGCATCTGGGAAGCTCTACCCTGAGT GCCCAGGAAAGATAAGGCATCTTGGAAGCTCTACCCTGAGT < 41bp 0.860929667803616 0.575269077161501 0.7642194 0.43476662 prediction 0.571321181284229 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46937297 chr3:46937299 nonsynonymous SNV 0.985 1 23 hm5C_associated_SNPs_56905 0 0 0 0 2 PTH1R chr3:46937225 3'AG 46937225 Downstream 75bp
chr3 46937299 46937299 1 + G T HNSC 46937297 + 46937277 46937317 41 GCCCAGGAAAGATAAGGCATCTGGGAAGCTCTACCCTGAGT GCCCAGGAAAGATAAGGCATCTTGGAAGCTCTACCCTGAGT < 41bp 0.860929667803616 0.575269077161501 0.7642194 0.43476662 prediction 0.571321181284229 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46937297 chr3:46937299 nonsynonymous SNV 0.985 1 23 hm5C_associated_SNPs_56905 0 0 0 0 2 PTH1R chr3:46937359 5'GT 46937359 Upstream 61bp
chr11 120097609 120097609 1 + G T STAD 120097606 + 120097586 120097626 41 ATGTCGCTGTCAACTTCAGCCAGGGGGCCCTGCTGAGCCCC ATGTCGCTGTCAACTTCAGCCAGTGGGCCCTGCTGAGCCCC < 41bp 0.901678278362486 0.616036680872537 0.9294952 0.54994106 prediction 0.571283194979899 Functional Loss - OAF ENSG00000184232 CDS Human protein_coding chr11:120097606 chr11:120097609 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_56909 0 0 0 0 2 OAF chr11:120097525 3'AG 120097525 Downstream 85bp
chr11 120097609 120097609 1 + G T STAD 120097606 + 120097586 120097626 41 ATGTCGCTGTCAACTTCAGCCAGGGGGCCCTGCTGAGCCCC ATGTCGCTGTCAACTTCAGCCAGTGGGCCCTGCTGAGCCCC < 41bp 0.901678278362486 0.616036680872537 0.9294952 0.54994106 prediction 0.571283194979899 Functional Loss - OAF ENSG00000184232 CDS Human protein_coding chr11:120097606 chr11:120097609 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_56909 0 0 0 0 2 OAF chr11:120097705 5'GT 120097705 Upstream 97bp
chr10 118616094 118616094 1 + G T SARC 118616092 + 118616072 118616112 41 GCGGAGGAGGCAGAGAGGGCCAGCGCGGTGAGCACCGCCGT GCGGAGGAGGCAGAGAGGGCCATCGCGGTGAGCACCGCCGT < 41bp 0.871775997264723 0.586177255104839 0.8239209 0.60053945 prediction 0.571197484319768 Functional Loss - ENO4 ENSG00000188316 CDS Human protein_coding chr10:118616092 chr10:118616094 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_56919 0 0 0 0 2 ENO4 chr10:118616003 3'AG 118616003 Downstream 92bp
chr10 118616094 118616094 1 + G T SARC 118616092 + 118616072 118616112 41 GCGGAGGAGGCAGAGAGGGCCAGCGCGGTGAGCACCGCCGT GCGGAGGAGGCAGAGAGGGCCATCGCGGTGAGCACCGCCGT < 41bp 0.871775997264723 0.586177255104839 0.8239209 0.60053945 prediction 0.571197484319768 Functional Loss - ENO4 ENSG00000188316 CDS Human protein_coding chr10:118616092 chr10:118616094 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_56919 0 0 0 0 2 ENO4 chr10:118616193 5'GT 118616193 Upstream 100bp
chr9 137778410 137778410 1 + G T LUAD 137778408 + 137778388 137778428 41 GGCCTTCGTGGAGGGCAGTGCGGGTGAGTGTCTGCTTGGGG GGCCTTCGTGGAGGGCAGTGCGTGTGAGTGTCTGCTTGGGG < 41bp 0.785594263247374 0.447503030491366 0.9110449 0.19164833 prediction 0.571188526494749 Functional Loss - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137778408 chr9:137778410 stopgain 0.081 0 23 hm5C_associated_SNPs_56920 0 0 0 0 1 FCN2 chr9:137778410 5'GT 137778410 Upstream 1bp
chr14 23940183 23940183 1 + A C UCEC 23940179 + 23940159 23940199 41 TCAAGCTGGTGCCTATCCTACAGAAAAGGTAAGATGTACTC TCAAGCTGGTGCCTATCCTACAGACAAGGTAAGATGTACTC < 41bp 0.785564978820533 0.381870143533787 0.21879247 0.19876635 prediction 0.571129957641065 Functional Loss - NGDN ENSG00000129460 CDS Human protein_coding chr14:23940179 chr14:23940183 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_56924 0 0 1 0 2 NGDN chr14:23940115 3'AG 23940115 Downstream 69bp
chr14 23940183 23940183 1 + A C UCEC 23940179 + 23940159 23940199 41 TCAAGCTGGTGCCTATCCTACAGAAAAGGTAAGATGTACTC TCAAGCTGGTGCCTATCCTACAGACAAGGTAAGATGTACTC < 41bp 0.785564978820533 0.381870143533787 0.21879247 0.19876635 prediction 0.571129957641065 Functional Loss - NGDN ENSG00000129460 CDS Human protein_coding chr14:23940179 chr14:23940183 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_56924 0 0 1 0 2 NGDN chr14:23940186 5'GT 23940186 Upstream 4bp
chr7 92158171 92158171 1 + A T LIHC 92158167 + 92158147 92158187 41 AGCTAGGGAGTTTATTTGATCACCACGTCCAGAGGGCGGTA AGCTAGGGAGTTTATTTGATCACCTCGTCCAGAGGGCGGTA < 41bp 0.809704588701371 0.524155114606123 0.060389727 0.06504795 prediction 0.571098948190496 Functional Loss - RBM48 ENSG00000127993 CDS Human protein_coding chr7:92158167 chr7:92158171 nonsynonymous SNV 0.633 4 25 hm5C_associated_SNPs_56926 0 0 1 0 1 RBM48 chr7:92158238 5'GT 92158238 Upstream 68bp
chr20 58567518 58567518 1 + G T UCS 58567515 + 58567495 58567535 41 TCACCGTGGAGCCAATTGACCGAGAATCCCCTCATGTAAAT TCACCGTGGAGCCAATTGACCGATAATCCCCTCATGTAAAT < 41bp 0.785541987214183 0.409722293113583 0.21253616 0.062217116 prediction 0.571083974428366 Functional Loss - CDH26 ENSG00000124215 CDS Human protein_coding chr20:58567515 chr20:58567518 stopgain 0.580 1 24 hm5C_associated_SNPs_56927 0 0 0 0 2 CDH26 chr20:58567433 3'AG 58567433 Downstream 86bp
chr20 58567518 58567518 1 + G T UCS 58567515 + 58567495 58567535 41 TCACCGTGGAGCCAATTGACCGAGAATCCCCTCATGTAAAT TCACCGTGGAGCCAATTGACCGATAATCCCCTCATGTAAAT < 41bp 0.785541987214183 0.409722293113583 0.21253616 0.062217116 prediction 0.571083974428366 Functional Loss - CDH26 ENSG00000124215 CDS Human protein_coding chr20:58567515 chr20:58567518 stopgain 0.580 1 24 hm5C_associated_SNPs_56927 0 0 0 0 2 CDH26 chr20:58567575 5'GT 58567575 Upstream 58bp
chr14 23237319 23237319 1 + G T UCEC 23237317 + 23237297 23237337 41 ACACCCCAGTGGGACTGATCCAGAATTTACTGGAATTTATG ACACCCCAGTGGGACTGATCCATAATTTACTGGAATTTATG < 41bp 0.785539460741256 0.454027431078192 0.2702642 0.14403772 prediction 0.571078921482512 Functional Loss - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23237317 chr14:23237319 nonsynonymous SNV 0.989 4 23 hm5C_associated_SNPs_56929 0 0 1 0 1 OXA1L chr14:23237380 5'GT 23237380 Upstream 62bp
chr5 162909710 162909710 1 + A C rs115405676 162909706 + 162909686 162909726 41 AGCTGGAGAACTCATCATTACAGGAAAAAGCGGCCAAGGCT AGCTGGAGAACTCATCATTACAGGCAAAAGCGGCCAAGGCT < 41bp 0.905009876342356 0.619473767671323 0.40595096 0.26157367 prediction 0.571072217342065 Functional Loss - HMMR ENSG00000072571 CDS Human protein_coding chr5:162909706 chr5:162909710 nonsynonymous SNV 0.168 3 25 hm5C_associated_SNPs_56930 0 0 1 0 2 HMMR chr5:162909648 3'AG 162909648 Downstream 63bp
chr5 162909710 162909710 1 + A C rs115405676 162909706 + 162909686 162909726 41 AGCTGGAGAACTCATCATTACAGGAAAAAGCGGCCAAGGCT AGCTGGAGAACTCATCATTACAGGCAAAAGCGGCCAAGGCT < 41bp 0.905009876342356 0.619473767671323 0.40595096 0.26157367 prediction 0.571072217342065 Functional Loss - HMMR ENSG00000072571 CDS Human protein_coding chr5:162909706 chr5:162909710 nonsynonymous SNV 0.168 3 25 hm5C_associated_SNPs_56930 0 0 1 0 2 HMMR chr5:162909794 5'GT 162909794 Upstream 85bp
chr3 179478938 179478938 1 + G C LUAD 179478937 + 179478917 179478957 41 TCATCAGTGATGCAGCTGGCCGAGATGGGTTTCCCGCTGGA TCATCAGTGATGCAGCTGGCCCAGATGGGTTTCCCGCTGGA < 41bp 0.785526394673065 0.49044504698453 0.4237288 0.18979028 prediction 0.57105278934613 Functional Loss - USP13 ENSG00000058056 CDS Human protein_coding chr3:179478937 chr3:179478938 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_56933 0 0 1 0 1 USP13 chr3:179478900 3'AG 179478900 Downstream 39bp
chr1 47606593 47606593 1 + G T COAD 47606591 + 47606571 47606611 41 GAAGGTGATTCTGGGGAGATCAGGTGAGATCGAACCCCCAT GAAGGTGATTCTGGGGAGATCATGTGAGATCGAACCCCCAT < 41bp 0.845618620835312 0.560094145880731 0.93322706 0.5069984 prediction 0.571048949909162 Functional Loss - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47606591 chr1:47606593 nonsynonymous SNV 0.018 3 23 hm5C_associated_SNPs_56934 0 0 0 0 1 CYP4A22 chr1:47606593 5'GT 47606593 Upstream 1bp
chr1 164761796 164761796 1 + A T KIRP 164761792 + 164761772 164761812 41 CCCCAGCTGATGCGGCTGGACAACATGCTGTTAGCGGAAGG CCCCAGCTGATGCGGCTGGACAACTTGCTGTTAGCGGAAGG < 41bp 0.785521022292492 0.477120764367739 0.06249827 0.076774955 prediction 0.571042044584984 Functional Loss - PBX1 ENSG00000185630 CDS Human protein_coding chr1:164761792 chr1:164761796 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_56935 0 0 0 0 1 PBX1 chr1:164761731 3'AG 164761731 Downstream 66bp
chr11 94322371 94322371 1 + G T UCS 94322368 + 94322348 94322388 41 TTTCAGAAGCGGGATGGCACCGAGATCACCTATGTGGATTA TTTCAGAAGCGGGATGGCACCGATATCACCTATGTGGATTA < 41bp 0.888631864498777 0.603129578349153 0.4728086 0.03317046 prediction 0.571004572299246 Functional Loss - PIWIL4 ENSG00000134627 CDS Human protein_coding chr11:94322368 chr11:94322371 nonsynonymous SNV 0.969 0 24 hm5C_associated_SNPs_56938 0 0 0 0 2 PIWIL4 chr11:94322287 3'AG 94322287 Downstream 85bp
chr11 94322371 94322371 1 + G T UCS 94322368 + 94322348 94322388 41 TTTCAGAAGCGGGATGGCACCGAGATCACCTATGTGGATTA TTTCAGAAGCGGGATGGCACCGATATCACCTATGTGGATTA < 41bp 0.888631864498777 0.603129578349153 0.4728086 0.03317046 prediction 0.571004572299246 Functional Loss - PIWIL4 ENSG00000134627 CDS Human protein_coding chr11:94322368 chr11:94322371 nonsynonymous SNV 0.969 0 24 hm5C_associated_SNPs_56938 0 0 0 0 2 PIWIL4 chr11:94322398 5'GT 94322398 Upstream 28bp
chr16 1545401 1545401 1 + G T LUAD 1545398 + 1545378 1545418 41 CTGCTGGCCAGATTCCTGCGCGAGGGCCGGCTGGCAGTGCT CTGCTGGCCAGATTCCTGCGCGATGGCCGGCTGGCAGTGCT < 41bp 0.785485453256709 0.395271497790079 0.8912099 0.28529698 prediction 0.570970906513418 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1545398 chr16:1545401 nonsynonymous SNV 0.008 1 24 hm5C_associated_SNPs_56943 0 0 1 0 1 TELO2 chr16:1545347 3'AG 1545347 Downstream 55bp
chr7 120609227 120609227 1 + G T GBM 120609225 + 120609205 120609245 41 AACACAGAATGCCAGTTCATCAGCAGCCGACTCACGGAGTG AACACAGAATGCCAGTTCATCATCAGCCGACTCACGGAGTG < 41bp 0.824438750652234 0.538956271985278 0.39879042 0.06008193 prediction 0.570964957333912 Functional Loss - ING3 ENSG00000071243 CDS Human protein_coding chr7:120609225 chr7:120609227 nonsynonymous SNV 0.956 0 23 hm5C_associated_SNPs_56944 0 0 0 0 1 ING3 chr7:120609258 5'GT 120609258 Upstream 32bp
chr21 46624505 46624505 1 + G T LUAD 46624503 + 46624483 46624523 41 GGCATCCAGGGATCCCTGCTCAGCATTTTCGTGGAGCCCAT GGCATCCAGGGATCCCTGCTCATCATTTTCGTGGAGCCCAT < 41bp 0.785466182315509 0.469516735777537 0.111322016 0.053435862 prediction 0.570932364631018 Functional Loss - ADARB1 ENSG00000197381 CDS Human protein_coding chr21:46624503 chr21:46624505 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_56946 0 0 1 0 1 ADARB1 chr21:46624470 3'AG 46624470 Downstream 36bp
chr13 96205224 96205224 1 + G T LUAD 96205221 + 96205201 96205241 41 ACTTCCCCTCCATGCTGGCGCTGGACGGTCTGCATCCCCGC ACTTCCCCTCCATGCTGGCGCTGTACGGTCTGCATCCCCGC < 41bp 0.889670270446661 0.604215602947952 0.3379007 0.48689988 prediction 0.570909334997419 Functional Loss - CLDN10 ENSG00000134873 CDS Human protein_coding chr13:96205221 chr13:96205224 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_56947 0 0 0 0 1 CLDN10 chr13:96205227 5'GT 96205227 Upstream 4bp
chr11 36472841 36472841 1 + G T STAD 36472839 + 36472819 36472859 41 CAAGTGGTTTCTCCTTTCCTCGGCATCAGCGGGGACCGTAG CAAGTGGTTTCTCCTTTCCTCGTCATCAGCGGGGACCGTAG < 41bp 0.785449121929582 0.45372788907044 0.22449678 0.0854263 prediction 0.570898243859164 Functional Loss - PRR5L ENSG00000135362 CDS Human protein_coding chr11:36472839 chr11:36472841 nonsynonymous SNV 0.506 3 23 hm5C_associated_SNPs_56948 0 0 0 0 1 PRR5L chr11:36472885 5'GT 36472885 Upstream 45bp
chr4 52945942 52945942 1 + G T LGG 52945939 + 52945919 52945959 41 CGAGCCATGAATGTCAATCCCAAGATTTCATTCCCTCCTGT CGAGCCATGAATGTCAATCCCAATATTTCATTCCCTCCTGT < 41bp 0.785448350829314 0.399260897491513 0.28468263 0.13774437 prediction 0.570896701658628 Functional Loss - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52945939 chr4:52945942 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_56949 0 0 1 0 1 SPATA18 chr4:52945910 3'AG 52945910 Downstream 33bp
chr19 13885348 13885348 1 + A C rs80019370 13885344 + 13885324 13885364 41 CAAACCCGCAAAGAGTAAGACGGCAGCGGCAGCCTCTGAAA CAAACCCGCAAAGAGTAAGACGGCCGCGGCAGCCTCTGAAA < 41bp 0.902425228300871 0.616977375311278 0.46340358 0.31676295 prediction 0.570895705979185 Functional Loss - C19orf53 ENSG00000104979 CDS Human protein_coding chr19:13885344 chr19:13885348 nonsynonymous SNV 0.032 0 25 hm5C_associated_SNPs_56950 0 0 1 0 1 C19orf53 chr19:13885388 5'GT 13885388 Upstream 41bp
chr7 141755854 141755854 1 + G C LUSC 141755853 + 141755833 141755873 41 TACATGGGGCTGGAGGAGGACGGCAGTGCCCATGGAGTGCT TACATGGGGCTGGAGGAGGACCGCAGTGCCCATGGAGTGCT < 41bp 0.80630411934744 0.520867576758518 0.27198774 0.15534702 prediction 0.570873085177844 Functional Loss - MGAM ENSG00000257335 CDS Human protein_coding chr7:141755853 chr7:141755854 nonsynonymous SNV 0.947 4 22 hm5C_associated_SNPs_56951 0 0 0 0 2 MGAM chr7:141755800 3'AG 141755800 Downstream 55bp
chr7 141755854 141755854 1 + G C LUSC 141755853 + 141755833 141755873 41 TACATGGGGCTGGAGGAGGACGGCAGTGCCCATGGAGTGCT TACATGGGGCTGGAGGAGGACCGCAGTGCCCATGGAGTGCT < 41bp 0.80630411934744 0.520867576758518 0.27198774 0.15534702 prediction 0.570873085177844 Functional Loss - MGAM ENSG00000257335 CDS Human protein_coding chr7:141755853 chr7:141755854 nonsynonymous SNV 0.947 4 22 hm5C_associated_SNPs_56951 0 0 0 0 2 MGAM chr7:141755896 5'GT 141755896 Upstream 43bp
chr7 139653219 139653219 1 + G C SKCM 139653218 + 139653198 139653238 41 TTCTCCTGGCTCATTTAAAACGCTATGCGGAATCTGGGGAC TTCTCCTGGCTCATTTAAAACCCTATGCGGAATCTGGGGAC < 41bp 0.801063969479425 0.515640209037996 0.19248855 0.15631828 prediction 0.570847520882857 Functional Loss - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139653218 chr7:139653219 nonsynonymous SNV 0.762 0 22 hm5C_associated_SNPs_56952 0 0 0 0 2 TBXAS1 chr7:139653167 3'AG 139653167 Downstream 53bp
chr7 139653219 139653219 1 + G C SKCM 139653218 + 139653198 139653238 41 TTCTCCTGGCTCATTTAAAACGCTATGCGGAATCTGGGGAC TTCTCCTGGCTCATTTAAAACCCTATGCGGAATCTGGGGAC < 41bp 0.801063969479425 0.515640209037996 0.19248855 0.15631828 prediction 0.570847520882857 Functional Loss - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139653218 chr7:139653219 nonsynonymous SNV 0.762 0 22 hm5C_associated_SNPs_56952 0 0 0 0 2 TBXAS1 chr7:139653255 5'GT 139653255 Upstream 37bp
chrX 69665408 69665408 1 + G T LUSC 69665406 + 69665386 69665426 41 CCAACCGGGACTGGTATGAGCAGGTATGGACCAGCGGAGGG CCAACCGGGACTGGTATGAGCATGTATGGACCAGCGGAGGG < 41bp 0.8648882607606 0.579473821044601 0.8576251 0.35369778 prediction 0.570828879431998 Functional Loss - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69665406 chrX:69665408 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_56954 0 0 0 0 1 DLG3 chrX:69665408 5'GT 69665408 Upstream 1bp
chr6 72892798 72892798 1 + G T LUSC 72892795 + 72892775 72892815 41 AGGAGGAGGGCGTGTCGACGCCCGAGTACACCAGCTGCGAG AGGAGGAGGGCGTGTCGACGCCCTAGTACACCAGCTGCGAG < 41bp 0.796574731940229 0.511177971997455 0.546653 0.13019845 prediction 0.570793519885548 Functional Loss - RIMS1 ENSG00000079841 CDS Human protein_coding chr6:72892795 chr6:72892798 stopgain 0.984 1 24 hm5C_associated_SNPs_56958 0 0 0 0 1 RIMS1 chr6:72892852 5'GT 72892852 Upstream 55bp
chr6 335138 335138 1 + G T SARC 335136 + 335116 335156 41 AGTTAAATACCTGTGCATCCCAGCAGCGGATTCACCATCTC AGTTAAATACCTGTGCATCCCATCAGCGGATTCACCATCTC < 41bp 0.785382888366799 0.471921486256702 0.21498689 0.082430094 prediction 0.570765776733598 Functional Loss - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:335136 chr6:335138 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_56960 0 0 0 0 2 DUSP22 chr6:335114 3'AG 335114 Downstream 25bp
chr6 335138 335138 1 + G T SARC 335136 + 335116 335156 41 AGTTAAATACCTGTGCATCCCAGCAGCGGATTCACCATCTC AGTTAAATACCTGTGCATCCCATCAGCGGATTCACCATCTC < 41bp 0.785382888366799 0.471921486256702 0.21498689 0.082430094 prediction 0.570765776733598 Functional Loss - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:335136 chr6:335138 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_56960 0 0 0 0 2 DUSP22 chr6:335163 5'GT 335163 Upstream 26bp
chr20 39978454 39978454 1 + G T SKCM 39978452 + 39978432 39978472 41 AACATCCCCTAAGAGCGACTCGGAGCTGGAGGTGCGGACCC AACATCCCCTAAGAGCGACTCGTAGCTGGAGGTGCGGACCC < 41bp 0.785375563513099 0.433269298425719 0.9104903 0.41919208 prediction 0.570751127026198 Functional Loss - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39978452 chr20:39978454 stopgain 0.957 1 23 hm5C_associated_SNPs_56961 0 0 1 0 2 LPIN3 chr20:39978414 3'AG 39978414 Downstream 41bp
chr20 39978454 39978454 1 + G T SKCM 39978452 + 39978432 39978472 41 AACATCCCCTAAGAGCGACTCGGAGCTGGAGGTGCGGACCC AACATCCCCTAAGAGCGACTCGTAGCTGGAGGTGCGGACCC < 41bp 0.785375563513099 0.433269298425719 0.9104903 0.41919208 prediction 0.570751127026198 Functional Loss - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39978452 chr20:39978454 stopgain 0.957 1 23 hm5C_associated_SNPs_56961 0 0 1 0 2 LPIN3 chr20:39978534 5'GT 39978534 Upstream 81bp
chr12 20893164 20893164 1 + G T LUAD 20893161 + 20893141 20893181 41 GGGAATTGCAGCTTCTAAATCCGGAAATTCCTCAGGCATAG GGGAATTGCAGCTTCTAAATCCGTAAATTCCTCAGGCATAG < 41bp 0.785370425067489 0.40940475081089 0.4747701 0.25030154 prediction 0.570740850134979 Functional Loss - SLCO1C1 ENSG00000139155 CDS Human protein_coding chr12:20893161 chr12:20893164 nonsynonymous SNV 0.977 0 24 hm5C_associated_SNPs_56962 0 0 0 0 1 SLCO1C1 chr12:20893118 3'AG 20893118 Downstream 47bp
chr11 68369359 68369359 1 + C T CESC 68369357 + 68369337 68369377 41 AGATTCTTTAAGGAGTAATTCTCCAGTGGAAATGGAAACCA AGATTCTTTAAGGAGTAATTCTTCAGTGGAAATGGAAACCA < 41bp 0.785360228243493 0.498617238366709 0.9291013 0.06338033 prediction 0.570720456486986 Functional Loss - PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68369357 chr11:68369359 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_56964 0 0 1 0 2 PPP6R3 chr11:68369331 3'AG 68369331 Downstream 29bp
chr11 68369359 68369359 1 + C T CESC 68369357 + 68369337 68369377 41 AGATTCTTTAAGGAGTAATTCTCCAGTGGAAATGGAAACCA AGATTCTTTAAGGAGTAATTCTTCAGTGGAAATGGAAACCA < 41bp 0.785360228243493 0.498617238366709 0.9291013 0.06338033 prediction 0.570720456486986 Functional Loss - PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68369357 chr11:68369359 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_56964 0 0 1 0 2 PPP6R3 chr11:68369437 5'GT 68369437 Upstream 79bp
chr4 152025689 152025689 1 + G T UCEC 152025687 + 152025667 152025707 41 AAAAGCCACTGGGGACGAGACAGGTGCTAAAGTTGAACGAG AAAAGCCACTGGGGACGAGACATGTGCTAAAGTTGAACGAG < 41bp 0.836626177797396 0.55127329634298 0.5211449 0.2413615 prediction 0.570705762908831 Functional Loss - RPS3A ENSG00000145425 CDS Human protein_coding chr4:152025687 chr4:152025689 nonsynonymous SNV 0.989 3 23 hm5C_associated_SNPs_56966 0 0 0 0 1 RPS3A chr4:152025624 3'AG 152025624 Downstream 66bp
chr5 34863061 34863061 1 + G T UCEC 34863058 + 34863038 34863078 41 GCCAAGAATACACTGTTGACCTGGAAGGCAAATACGACCTC GCCAAGAATACACTGTTGACCTGTAAGGCAAATACGACCTC < 41bp 0.879124266259845 0.593772600568555 0.048689425 0.05858144 prediction 0.57070333138258 Functional Loss - TTC23L ENSG00000205838 CDS Human protein_coding chr5:34863058 chr5:34863061 stopgain 0.990 2 24 hm5C_associated_SNPs_56967 0 0 0 0 1 TTC23L chr5:34863003 3'AG 34863003 Downstream 59bp
chr9 95374869 95374869 1 + G T SARC 95374866 + 95374846 95374886 41 ATGGGAAGGTTTTTCCAAAGCTGGATCTTCTCACCAAAGTC ATGGGAAGGTTTTTCCAAAGCTGTATCTTCTCACCAAAGTC < 41bp 0.785344070490333 0.430562522642628 0.11848706 0.056420833 prediction 0.570688140980665 Functional Loss - CENPP ENSG00000188312 CDS Human protein_coding chr9:95374866 chr9:95374869 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_56969 0 0 0 0 2 CENPP chr9:95374805 3'AG 95374805 Downstream 65bp
chr9 95374869 95374869 1 + G T SARC 95374866 + 95374846 95374886 41 ATGGGAAGGTTTTTCCAAAGCTGGATCTTCTCACCAAAGTC ATGGGAAGGTTTTTCCAAAGCTGTATCTTCTCACCAAAGTC < 41bp 0.785344070490333 0.430562522642628 0.11848706 0.056420833 prediction 0.570688140980665 Functional Loss - CENPP ENSG00000188312 CDS Human protein_coding chr9:95374866 chr9:95374869 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_56969 0 0 0 0 2 CENPP chr9:95374896 5'GT 95374896 Upstream 28bp
chr1 33235331 33235331 1 + G C COAD 33235330 + 33235310 33235350 41 CTGGAAAGTCAGGGCGGCGTCGGCGGGAGCGGCGGAGCACT CTGGAAAGTCAGGGCGGCGTCCGCGGGAGCGGCGGAGCACT < 41bp 0.785341859040085 0.484716390651239 0.91764915 0.90288025 prediction 0.57068371808017 Functional Loss - KIAA1522 ENSG00000162522 CDS Human protein_coding chr1:33235330 chr1:33235331 nonsynonymous SNV 0.809 4 22 hm5C_associated_SNPs_56970 0 0 1 0 2 KIAA1522 chr1:33235274 3'AG 33235274 Downstream 58bp
chr1 33235331 33235331 1 + G C COAD 33235330 + 33235310 33235350 41 CTGGAAAGTCAGGGCGGCGTCGGCGGGAGCGGCGGAGCACT CTGGAAAGTCAGGGCGGCGTCCGCGGGAGCGGCGGAGCACT < 41bp 0.785341859040085 0.484716390651239 0.91764915 0.90288025 prediction 0.57068371808017 Functional Loss - KIAA1522 ENSG00000162522 CDS Human protein_coding chr1:33235330 chr1:33235331 nonsynonymous SNV 0.809 4 22 hm5C_associated_SNPs_56970 0 0 1 0 2 KIAA1522 chr1:33235387 5'GT 33235387 Upstream 57bp
chr6 100057179 100057179 1 + G T SKCM 100057176 + 100057156 100057196 41 ACAGCGACTCCGACTCACGACGAGAAAGGTACCCATTCCAA ACAGCGACTCCGACTCACGACGATAAAGGTACCCATTCCAA < 41bp 0.785329476336529 0.399251858348783 0.19504821 0.032622486 prediction 0.570658952673058 Functional Loss - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100057176 chr6:100057179 nonsynonymous SNV 0.893 2 24 hm5C_associated_SNPs_56973 0 0 0 0 1 PRDM13 chr6:100057183 5'GT 100057183 Upstream 5bp
chr3 197687166 197687166 1 + G T LIHC 197687163 + 197687143 197687183 41 GGGTTACTCGGGCTCAGGCCCGGGCCGGAGCCGGTGGCGCT GGGTTACTCGGGCTCAGGCCCGGTCCGGAGCCGGTGGCGCT < 41bp 0.785305520216673 0.411889641208198 0.8972467 0.659302 prediction 0.570611040433346 Functional Loss - LMLN ENSG00000185621 CDS Human protein_coding chr3:197687163 chr3:197687166 nonsynonymous SNV 0.041 1 24 hm5C_associated_SNPs_56976 0 0 1 0 1 LMLN chr3:197687190 5'GT 197687190 Upstream 25bp
chr19 54416232 54416232 1 + G T BLCA 54416229 + 54416209 54416249 41 CTACCGCAGAACCAGACCACCGAGGTCAAGATGGCCCTGCA CTACCGCAGAACCAGACCACCGATGTCAAGATGGCCCTGCA < 41bp 0.785303892331919 0.401018510968045 0.8889355 0.33090195 prediction 0.570607784663839 Functional Loss - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54416229 chr19:54416232 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_56977 0 0 0 0 1 CACNG7 chr19:54416281 5'GT 54416281 Upstream 50bp
chr19 55179143 55179143 1 + A C rs200441190 55179139 + 55179119 55179159 41 ACGTATGCCAAGGTGAAACACTCCAGACCTAGGAGAGAAAT ACGTATGCCAAGGTGAAACACTCCCGACCTAGGAGAGAAAT < 41bp 0.785273370484459 0.378576355697314 0.92666984 0.19887581 prediction 0.570546740968918 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55179139 chr19:55179143 synonymous SNV . 0 25 hm5C_associated_SNPs_56978 0 0 0 0 2 LILRB4 chr19:55179086 3'AG 55179086 Downstream 58bp
chr19 55179143 55179143 1 + A C rs200441190 55179139 + 55179119 55179159 41 ACGTATGCCAAGGTGAAACACTCCAGACCTAGGAGAGAAAT ACGTATGCCAAGGTGAAACACTCCCGACCTAGGAGAGAAAT < 41bp 0.785273370484459 0.378576355697314 0.92666984 0.19887581 prediction 0.570546740968918 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55179139 chr19:55179143 synonymous SNV . 0 25 hm5C_associated_SNPs_56978 0 0 0 0 2 LILRB4 chr19:55179089 3'AG 55179089 Downstream 55bp
chr20 44430077 44430077 1 + G T OV 44430074 + 44430054 44430094 41 CAGAAGAAGAATGTGCCCATCGAGGAAGCCCCCTTCCTAAA CAGAAGAAGAATGTGCCCATCGATGAAGCCCCCTTCCTAAA < 41bp 0.78527019498691 0.395047577477294 0.902322 0.24961591 prediction 0.57054038997382 Functional Loss - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44430074 chr20:44430077 stopgain 1.000 1 24 hm5C_associated_SNPs_56979 0 0 1 0 1 DNTTIP1 chr20:44430097 5'GT 44430097 Upstream 21bp
chr12 7302240 7302240 1 + G T UCEC 7302238 + 7302218 7302258 41 TCCTGGACACAACCTCTCTGCAGCAGCGGGGGCTGGAGCTC TCCTGGACACAACCTCTCTGCATCAGCGGGGGCTGGAGCTC < 41bp 0.785269125039401 0.450660303368765 0.25052086 0.05688393 prediction 0.570538250078803 Functional Loss - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7302238 chr12:7302240 nonsynonymous SNV 0.934 0 23 hm5C_associated_SNPs_56980 0 0 1 0 1 CLSTN3 chr12:7302289 5'GT 7302289 Upstream 50bp
chr16 90102867 90102867 1 + A C UCEC 90102863 + 90102843 90102883 41 TGCGGAGAAAGACTGAGCTCCACGAAGTGGAGGAGAGGAAG TGCGGAGAAAGACTGAGCTCCACGCAGTGGAGGAGAGGAAG < 41bp 0.785266016474399 0.37101485449321 0.09133929 0.06655446 prediction 0.570532032948799 Functional Loss - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90102863 chr16:90102867 nonsynonymous SNV 0.989 3 25 hm5C_associated_SNPs_56981 0 0 1 0 1 GAS8 chr16:90102789 3'AG 90102789 Downstream 79bp
chr11 70281209 70281209 1 + G T HNSC 70281206 + 70281186 70281226 41 TGATTGACGACGGCTGGTGGCGCGGGGTGTGCAAGGGCCGG TGATTGACGACGGCTGGTGGCGCTGGGTGTGCAAGGGCCGG < 41bp 0.891571632061463 0.606327053122565 0.8629674 0.24531111 prediction 0.570489157877796 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70281206 chr11:70281209 nonsynonymous SNV 0.955 4 24 hm5C_associated_SNPs_56987 0 0 1 0 2 CTTN chr11:70281132 3'AG 70281132 Downstream 78bp
chr11 70281209 70281209 1 + G T HNSC 70281206 + 70281186 70281226 41 TGATTGACGACGGCTGGTGGCGCGGGGTGTGCAAGGGCCGG TGATTGACGACGGCTGGTGGCGCTGGGTGTGCAAGGGCCGG < 41bp 0.891571632061463 0.606327053122565 0.8629674 0.24531111 prediction 0.570489157877796 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70281206 chr11:70281209 nonsynonymous SNV 0.955 4 24 hm5C_associated_SNPs_56987 0 0 1 0 2 CTTN chr11:70281225 5'GT 70281225 Upstream 17bp
chr7 150773121 150773121 1 - C A UCEC 150773123 - 150773103 150773143 41 AGCAGCTGCAGGGCCGTGAACAGGTGCATACGGAGGGTCCG AGCAGCTGCAGGGCCGTGAACATGTGCATACGGAGGGTCCG < 41bp 0.867613972930321 0.582374867360609 0.889997 0.5332161 prediction 0.570478211139425 Functional Loss - SLC4A2 ENSG00000164889 CDS Human antisense chr7:150773123 chr7:150773121 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_56990 0 0 0 0 1 SLC4A2 chr7:150773083 5'GT 150773083 Upstream 39bp
chr1 111439325 111439325 1 + A T UCEC 111439321 + 111439301 111439341 41 GAGTGATTGGACCAGTGGCCCACCAGCATCTTGCCCCTCAG GAGTGATTGGACCAGTGGCCCACCTGCATCTTGCCCCTCAG < 41bp 0.824846198276562 0.539619043024913 0.091514796 0.05532542 prediction 0.570454310503298 Functional Loss - CD53 ENSG00000143119 CDS Human protein_coding chr1:111439321 chr1:111439325 synonymous SNV . 0 25 hm5C_associated_SNPs_56991 0 0 1 0 2 CD53 chr1:111439275 3'AG 111439275 Downstream 51bp
chr1 111439325 111439325 1 + A T UCEC 111439321 + 111439301 111439341 41 GAGTGATTGGACCAGTGGCCCACCAGCATCTTGCCCCTCAG GAGTGATTGGACCAGTGGCCCACCTGCATCTTGCCCCTCAG < 41bp 0.824846198276562 0.539619043024913 0.091514796 0.05532542 prediction 0.570454310503298 Functional Loss - CD53 ENSG00000143119 CDS Human protein_coding chr1:111439321 chr1:111439325 synonymous SNV . 0 25 hm5C_associated_SNPs_56991 0 0 1 0 2 CD53 chr1:111439355 5'GT 111439355 Upstream 31bp
chr12 106715430 106715430 1 + G C LUAD 106715429 + 106715409 106715449 41 GAAAGCTGTGTGCTCCCGTGCGAGATAATGATATCAGAGAG GAAAGCTGTGTGCTCCCGTGCCAGATAATGATATCAGAGAG < 41bp 0.82008423302472 0.534872552041735 0.8531648 0.355551 prediction 0.570423361965972 Functional Loss - TCP11L2 ENSG00000166046 CDS Human protein_coding chr12:106715429 chr12:106715430 nonsynonymous SNV 0.953 4 22 hm5C_associated_SNPs_56995 0 0 0 0 1 TCP11L2 chr12:106715484 5'GT 106715484 Upstream 55bp
chr1 43775104 43775104 1 + G C LUSC 43775103 + 43775083 43775123 41 GAGAAGACCACAGCTGAGTTCGAGGTGCCCCGCTTGGTTCT GAGAAGACCACAGCTGAGTTCCAGGTGCCCCGCTTGGTTCT < 41bp 0.785207460600072 0.487145795558438 0.92997974 0.90836877 prediction 0.570414921200145 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43775103 chr1:43775104 nonsynonymous SNV 0.869 0 22 hm5C_associated_SNPs_56997 0 0 0 0 1 TIE1 chr1:43775059 3'AG 43775059 Downstream 46bp
chr5 115336886 115336886 1 + G T GBM 115336884 + 115336864 115336904 41 TGTCTACTGGCGTCATGAAACAGGAGCCATTTTATCTTGAA TGTCTACTGGCGTCATGAAACATGAGCCATTTTATCTTGAA < 41bp 0.837888575941024 0.55268730331829 0.43047345 0.10209039 prediction 0.570402545245468 Functional Loss - LVRN ENSG00000172901 CDS Human protein_coding chr5:115336884 chr5:115336886 nonsynonymous SNV 0.988 3 23 hm5C_associated_SNPs_56999 0 0 0 0 1 LVRN chr5:115336936 5'GT 115336936 Upstream 51bp
chr1 152484031 152484031 1 + G T COAD 152484029 + 152484009 152484049 41 AGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTCCT AGATGTCCTGCCAGCAGAGCCATCAGCAGTGCCAGCCTCCT < 41bp 0.842867378858985 0.557667360280693 0.73849934 0.072411805 prediction 0.570400037156583 Functional Loss - LCE5A ENSG00000186207 CDS Human protein_coding chr1:152484029 chr1:152484031 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_57000 0 0 0 0 1 LCE5A chr1:152483990 3'AG 152483990 Downstream 42bp
chr2 26679340 26679340 1 + A T LUAD 26679336 + 26679316 26679356 41 CTTTCTTTTCCAGATCAACTCTGAACTGCAAGTTCCTCCCA CTTTCTTTTCCAGATCAACTCTGATCTGCAAGTTCCTCCCA < 41bp 0.808790717607863 0.523608425139684 0.09454122 0.06025952 prediction 0.570364584936358 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26679336 chr2:26679340 nonsynonymous SNV 0.291 2 25 hm5C_associated_SNPs_57002 0 0 0 0 1 DRC1 chr2:26679329 3'AG 26679329 Downstream 12bp
chr5 137681245 137681245 1 + G T TGCT 137681242 + 137681222 137681262 41 AAACTGGGGTCAAGCGGCGCCACGAGGAAGACCCCCGGCGT AAACTGGGGTCAAGCGGCGCCACTAGGAAGACCCCCGGCGT < 41bp 0.888836435099855 0.603657402360333 0.40069646 0.14619657 prediction 0.570358065479044 Functional Loss - FAM53C ENSG00000120709 CDS Human protein_coding chr5:137681242 chr5:137681245 stopgain 0.989 1 24 hm5C_associated_SNPs_57003 0 0 1 0 1 FAM53C chr5:137681298 5'GT 137681298 Upstream 54bp
chr8 42176906 42176906 1 + G T LUAD 42176903 + 42176883 42176923 41 AAACCAGCATCCAGATTGACCTGGAGAAGTACAGCGAGCAA AAACCAGCATCCAGATTGACCTGTAGAAGTACAGCGAGCAA < 41bp 0.785173390973614 0.419893065011956 0.12835887 0.12339339 prediction 0.570346781947228 Functional Loss - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42176903 chr8:42176906 stopgain 1.000 1 24 hm5C_associated_SNPs_57005 0 0 1 0 1 IKBKB chr8:42176939 5'GT 42176939 Upstream 34bp
chr6 135521308 135521308 1 + G T UCEC 135521305 + 135521285 135521325 41 TCAAACATGCACTTGCAGCTCAAGAAATTAAATACGGTCCC TCAAACATGCACTTGCAGCTCAATAAATTAAATACGGTCCC < 41bp 0.785159903147535 0.47558612390505 0.014883012 0.018035173 prediction 0.57031980629507 Functional Loss - MYB ENSG00000118513 CDS Human protein_coding chr6:135521305 chr6:135521308 stopgain 1.000 1 24 hm5C_associated_SNPs_57007 0 0 0 0 2 MYB chr6:135521223 3'AG 135521223 Downstream 86bp
chr6 135521308 135521308 1 + G T UCEC 135521305 + 135521285 135521325 41 TCAAACATGCACTTGCAGCTCAAGAAATTAAATACGGTCCC TCAAACATGCACTTGCAGCTCAATAAATTAAATACGGTCCC < 41bp 0.785159903147535 0.47558612390505 0.014883012 0.018035173 prediction 0.57031980629507 Functional Loss - MYB ENSG00000118513 CDS Human protein_coding chr6:135521305 chr6:135521308 stopgain 1.000 1 24 hm5C_associated_SNPs_57007 0 0 0 0 2 MYB chr6:135521337 5'GT 135521337 Upstream 30bp
chr18 43685275 43685275 1 + G T COAD 43685273 + 43685253 43685293 41 GAACGCAACAGGGTCCGGGACAGGGATGTCTACCTGGTAAT GAACGCAACAGGGTCCGGGACATGGATGTCTACCTGGTAAT < 41bp 0.812538163641223 0.527392353605881 0.8134581 0.35706085 prediction 0.570291620070684 Functional Loss - HAUS1 ENSG00000152240 CDS Human protein_coding chr18:43685273 chr18:43685275 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_57009 0 0 0 0 2 HAUS1 chr18:43685334 5'GT 43685334 Upstream 60bp
chr18 43685275 43685275 1 + G T COAD 43685273 + 43685253 43685293 41 GAACGCAACAGGGTCCGGGACAGGGATGTCTACCTGGTAAT GAACGCAACAGGGTCCGGGACATGGATGTCTACCTGGTAAT < 41bp 0.812538163641223 0.527392353605881 0.8134581 0.35706085 prediction 0.570291620070684 Functional Loss - HAUS1 ENSG00000152240 CDS Human protein_coding chr18:43685273 chr18:43685275 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_57009 0 0 0 0 2 HAUS1 chr18:43685374 5'GT 43685374 Upstream 100bp
chr5 115627220 115627220 1 + G T LUSC 115627217 + 115627197 115627237 41 GTTTTTCTTCCTTACAGAGCCTGGAGAAAGTTCTTGTGGAA GTTTTTCTTCCTTACAGAGCCTGTAGAAAGTTCTTGTGGAA < 41bp 0.785144380781599 0.443413363560987 0.21195671 0.026909888 prediction 0.570288761563199 Functional Loss - COMMD10 ENSG00000145781 CDS Human protein_coding chr5:115627217 chr5:115627220 stopgain 0.999 0 24 hm5C_associated_SNPs_57011 0 0 1 0 2 COMMD10 chr5:115627214 3'AG 115627214 Downstream 7bp
chr5 115627220 115627220 1 + G T LUSC 115627217 + 115627197 115627237 41 GTTTTTCTTCCTTACAGAGCCTGGAGAAAGTTCTTGTGGAA GTTTTTCTTCCTTACAGAGCCTGTAGAAAGTTCTTGTGGAA < 41bp 0.785144380781599 0.443413363560987 0.21195671 0.026909888 prediction 0.570288761563199 Functional Loss - COMMD10 ENSG00000145781 CDS Human protein_coding chr5:115627217 chr5:115627220 stopgain 0.999 0 24 hm5C_associated_SNPs_57011 0 0 1 0 2 COMMD10 chr5:115627273 5'GT 115627273 Upstream 54bp
chr6 74171766 74171766 1 + G T BRCA 74171764 + 74171744 74171784 41 CTCGGTGCGGCTCTCGGACTCTGCTCCTCACTCACCGCGTG CTCGGTGCGGCTCTCGGACTCTTCTCCTCACTCACCGCGTG < 41bp 0.785138458447313 0.45886228173318 0.06915614 0.06258747 prediction 0.570276916894626 Functional Loss - MTO1 ENSG00000135297 CDS Human protein_coding chr6:74171764 chr6:74171766 synonymous SNV . 0 23 hm5C_associated_SNPs_57012 0 0 1 0 1 MTO1 chr6:74171794 5'GT 74171794 Upstream 29bp
chr2 159519930 159519930 1 + C T THCA 159519928 + 159519908 159519948 41 TGGAAGGCTCTGCAGGGTCTCTCCAGAACCTCTCTGCTGGC TGGAAGGCTCTGCAGGGTCTCTTCAGAACCTCTCTGCTGGC < 41bp 0.785297182329637 0.50015951617623 0.9632076 0.3551761 prediction 0.570275332306814 Functional Loss - PKP4 ENSG00000144283 CDS Human protein_coding chr2:159519928 chr2:159519930 synonymous SNV . 0 23 hm5C_associated_SNPs_57013 0 0 1 0 1 PKP4 chr2:159519957 5'GT 159519957 Upstream 28bp
chr3 5244719 5244719 1 + C T SKCM 5244717 + 5244697 5244737 41 GCACAGCGGGAGCCGGTTCCCTCCTGGTGGAATTTGGGATT GCACAGCGGGAGCCGGTTCCCTTCTGGTGGAATTTGGGATT < 41bp 0.790167954029653 0.505043569543793 0.18899977 0.22004268 prediction 0.570248768971719 Functional Loss - EDEM1 ENSG00000134109 CDS Human protein_coding chr3:5244717 chr3:5244719 synonymous SNV . 0 23 hm5C_associated_SNPs_57015 0 0 1 0 1 EDEM1 chr3:5244651 3'AG 5244651 Downstream 69bp
chr12 121098025 121098025 1 + G C BLCA 121098024 + 121098004 121098044 41 CGAGAGGCCTTCAGAGAATTCGACAAGGACAAGGATGGCTA CGAGAGGCCTTCAGAGAATTCCACAAGGACAAGGATGGCTA < 41bp 0.785119909068786 0.481782204976297 0.34656596 0.1947161 prediction 0.570239818137573 Functional Loss - CABP1 ENSG00000157782 CDS Human protein_coding chr12:121098024 chr12:121098025 nonsynonymous SNV 0.996 5 22 hm5C_associated_SNPs_57016 0 0 0 0 1 CABP1 chr12:121097999 3'AG 121097999 Downstream 27bp
chrX 153046776 153046776 1 + G T STAD 153046774 + 153046754 153046794 41 TGGGCTCCGACGACGAGGAACAGGAAGACCCCAAAGACTAC TGGGCTCCGACGACGAGGAACATGAAGACCCCAAAGACTAC < 41bp 0.785101961242572 0.446215844286972 0.4721778 0.24210808 prediction 0.570203922485144 Functional Loss - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153046774 chrX:153046776 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_57020 0 0 0 0 1 SRPK3 chrX:153046738 3'AG 153046738 Downstream 39bp
chr4 106744216 106744216 1 + G T LUAD 106744214 + 106744194 106744234 41 GGTGACAGAATTGTGGATTTCTGCAGCGGTGGGGTATTTTA GGTGACAGAATTGTGGATTTCTTCAGCGGTGGGGTATTTTA < 41bp 0.825957606671338 0.540862088920814 0.30150753 0.36479533 prediction 0.570191035501048 Functional Loss - GSTCD ENSG00000138780 CDS Human protein_coding chr4:106744214 chr4:106744216 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_57021 0 0 1 0 1 GSTCD chr4:106744226 5'GT 106744226 Upstream 11bp
chr6 167591959 167591959 1 + G T COAD 167591956 + 167591936 167591976 41 AAAGTCCTCCCGGGAGACGTCAAGACAGAAGTCCAGCACCC AAAGTCCTCCCGGGAGACGTCAATACAGAAGTCCAGCACCC < 41bp 0.897485056699404 0.6124044611545 0.36025637 0.14200813 prediction 0.570161191089808 Functional Loss - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167591956 chr6:167591959 nonsynonymous SNV 0.015 3 24 hm5C_associated_SNPs_57024 0 0 0 0 2 TCP10L2 chr6:167591872 3'AG 167591872 Downstream 88bp
chr6 167591959 167591959 1 + G T COAD 167591956 + 167591936 167591976 41 AAAGTCCTCCCGGGAGACGTCAAGACAGAAGTCCAGCACCC AAAGTCCTCCCGGGAGACGTCAATACAGAAGTCCAGCACCC < 41bp 0.897485056699404 0.6124044611545 0.36025637 0.14200813 prediction 0.570161191089808 Functional Loss - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167591956 chr6:167591959 nonsynonymous SNV 0.015 3 24 hm5C_associated_SNPs_57024 0 0 0 0 2 TCP10L2 chr6:167592030 5'GT 167592030 Upstream 72bp
chr11 64893239 64893239 1 + G T OV 64893237 + 64893217 64893257 41 AAGATTTTCTGAGCCCGCTGCTGGGGAAGACACCTGTCACC AAGATTTTCTGAGCCCGCTGCTTGGGAAGACACCTGTCACC < 41bp 0.785061062170533 0.461222514916743 0.8115246 0.21005943 prediction 0.570122124341067 Functional Loss - MRPL49 ENSG00000149792 CDS Human protein_coding chr11:64893237 chr11:64893239 synonymous SNV . 0 23 hm5C_associated_SNPs_57027 0 0 1 0 1 MRPL49 chr11:64893198 3'AG 64893198 Downstream 42bp
chr6 160232794 160232794 1 + G T UCEC 160232791 + 160232771 160232811 41 TTTCCTGTTCTCATTGATACCAAGAGTGTAACAAAGGATAT TTTCCTGTTCTCATTGATACCAATAGTGTAACAAAGGATAT < 41bp 0.785039698617383 0.420780805066343 0.19852337 0.100907505 prediction 0.570079397234765 Functional Loss - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160232791 chr6:160232794 nonsynonymous SNV 0.896 3 24 hm5C_associated_SNPs_57031 0 0 1 0 2 PNLDC1 chr6:160232733 3'AG 160232733 Downstream 62bp
chr6 160232794 160232794 1 + G T UCEC 160232791 + 160232771 160232811 41 TTTCCTGTTCTCATTGATACCAAGAGTGTAACAAAGGATAT TTTCCTGTTCTCATTGATACCAATAGTGTAACAAAGGATAT < 41bp 0.785039698617383 0.420780805066343 0.19852337 0.100907505 prediction 0.570079397234765 Functional Loss - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160232791 chr6:160232794 nonsynonymous SNV 0.896 3 24 hm5C_associated_SNPs_57031 0 0 1 0 2 PNLDC1 chr6:160232818 5'GT 160232818 Upstream 25bp
chr12 113533170 113533170 1 + G T LUSC 113533167 + 113533147 113533187 41 CCCCGGGAAGAAGTTCACCGCAAGAGGATTCCCTCGCCACT CCCCGGGAAGAAGTTCACCGCAATAGGATTCCCTCGCCACT < 41bp 0.785037444093139 0.399766667441716 0.813249 0.28014717 prediction 0.570074888186278 Functional Loss - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113533167 chr12:113533170 nonsynonymous SNV 0.937 2 24 hm5C_associated_SNPs_57032 0 0 0 0 2 DTX1 chr12:113533130 3'AG 113533130 Downstream 41bp
chr12 113533170 113533170 1 + G T LUSC 113533167 + 113533147 113533187 41 CCCCGGGAAGAAGTTCACCGCAAGAGGATTCCCTCGCCACT CCCCGGGAAGAAGTTCACCGCAATAGGATTCCCTCGCCACT < 41bp 0.785037444093139 0.399766667441716 0.813249 0.28014717 prediction 0.570074888186278 Functional Loss - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113533167 chr12:113533170 nonsynonymous SNV 0.937 2 24 hm5C_associated_SNPs_57032 0 0 0 0 2 DTX1 chr12:113533219 5'GT 113533219 Upstream 50bp
chr6 24785965 24785965 1 + G T UCEC 24785963 + 24785943 24785983 41 GGATTCTCTAGTGGAAGACTCAGAAATTGGCACGTGTGCTG GGATTCTCTAGTGGAAGACTCATAAATTGGCACGTGTGCTG < 41bp 0.785036593398209 0.472428707849188 0.574766 0.07315442 prediction 0.570073186796419 Functional Loss - GMNN ENSG00000112312 CDS Human protein_coding chr6:24785963 chr6:24785965 stopgain 0.129 0 23 hm5C_associated_SNPs_57034 0 0 1 0 1 GMNN chr6:24785866 3'AG 24785866 Downstream 100bp
chr5 70672131 70672131 1 + G T LUAD 70672128 + 70672108 70672148 41 CTTCAGCACTCAGATGTATGCTGGGAAGAGTCTACCAACGT CTTCAGCACTCAGATGTATGCTGTGAAGAGTCTACCAACGT < 41bp 0.785033960234364 0.452558781818868 0.27750295 0.04581538 prediction 0.570067920468728 Functional Loss - PMCHL2 ENSG00000169040 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:70672128 chr5:70672131 . . 0 24 hm5C_associated_SNPs_57035 0 0 0 2 1 PMCHL2 chr5:70672114 3'AG 70672114 Downstream 18bp
chr5 70672130 70672130 1 + G T LUAD 70672128 + 70672108 70672148 41 CTTCAGCACTCAGATGTATGCTGGGAAGAGTCTACCAACGT CTTCAGCACTCAGATGTATGCTTGGAAGAGTCTACCAACGT < 41bp 0.785033960234364 0.490774701859383 0.27750295 0.050143123 prediction 0.570067920468728 Functional Loss - PMCHL2 ENSG00000169040 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:70672128 chr5:70672130 . . 0 23 hm5C_associated_SNPs_57036 0 0 0 2 1 PMCHL2 chr5:70672114 3'AG 70672114 Downstream 17bp
chr11 7083601 7083601 1 + G T LUSC 7083598 + 7083578 7083618 41 TTCTCACTAATGCATGTTGTCTGGATCTGGCTTCTGTTATT TTCTCACTAATGCATGTTGTCTGTATCTGGCTTCTGTTATT < 41bp 0.785031784608583 0.416080775654126 0.2984299 0.032210886 prediction 0.570063569217166 Functional Loss - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7083598 chr11:7083601 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_57037 0 0 0 0 1 NLRP14 chr11:7083564 3'AG 7083564 Downstream 38bp
chr2 179355493 179355493 1 + G T STAD 179355490 + 179355470 179355510 41 GACAGAGGTGGCTGGTCGCTCTGGGGAGCTCCAAAGCATGT GACAGAGGTGGCTGGTCGCTCTGTGGAGCTCCAAAGCATGT < 41bp 0.785027865010333 0.419334673418822 0.8155333 0.045710593 prediction 0.570055730020667 Functional Loss - PLEKHA3 ENSG00000116095 CDS Human protein_coding chr2:179355490 chr2:179355493 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_57038 0 0 0 0 1 PLEKHA3 chr2:179355541 5'GT 179355541 Upstream 49bp
chr11 114112975 114112975 1 + G T LUSC 114112973 + 114112953 114112993 41 GCAGCACATGGAGGTCCACGCGGGCGTGCGCAGCTACATCT GCAGCACATGGAGGTCCACGCGTGCGTGCGCAGCTACATCT < 41bp 0.861576995003017 0.576553937948602 0.9220089 0.36942023 prediction 0.57004611410883 Functional Loss - ZBTB16 ENSG00000109906 CDS Human protein_coding chr11:114112973 chr11:114112975 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_57039 0 0 0 0 2 ZBTB16 chr11:114112889 3'AG 114112889 Downstream 87bp
chr11 114112975 114112975 1 + G T LUSC 114112973 + 114112953 114112993 41 GCAGCACATGGAGGTCCACGCGGGCGTGCGCAGCTACATCT GCAGCACATGGAGGTCCACGCGTGCGTGCGCAGCTACATCT < 41bp 0.861576995003017 0.576553937948602 0.9220089 0.36942023 prediction 0.57004611410883 Functional Loss - ZBTB16 ENSG00000109906 CDS Human protein_coding chr11:114112973 chr11:114112975 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_57039 0 0 0 0 2 ZBTB16 chr11:114113059 5'GT 114113059 Upstream 85bp
chr11 44129312 44129312 1 + G T UCEC 44129309 + 44129289 44129329 41 CCGGGGTCCTGCCCTCATCCCAAGAATGAAGACCAAGCACC CCGGGGTCCTGCCCTCATCCCAATAATGAAGACCAAGCACC < 41bp 0.785002511700901 0.407400377617283 0.0929932 0.06283796 prediction 0.570005023401801 Functional Loss - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129309 chr11:44129312 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_57041 0 0 1 0 1 EXT2 chr11:44129233 3'AG 44129233 Downstream 80bp
chr2 85823724 85823724 1 + A T rs139155037 85823720 + 85823700 85823740 41 CACCTGCCTCCACCAGCTGCCAAGACTGTGGTTGAGAACCT CACCTGCCTCCACCAGCTGCCAAGTCTGTGGTTGAGAACCT < 41bp 0.808814702802538 0.523818279800056 0.25018936 0.3734865 prediction 0.569992846004964 Functional Loss - RNF181 ENSG00000168894 CDS Human protein_coding chr2:85823720 chr2:85823724 nonsynonymous SNV 0.792 1 25 hm5C_associated_SNPs_57043 0 0 1 0 2 RNF181 chr2:85823642 3'AG 85823642 Downstream 83bp
chr2 85823724 85823724 1 + A T rs139155037 85823720 + 85823700 85823740 41 CACCTGCCTCCACCAGCTGCCAAGACTGTGGTTGAGAACCT CACCTGCCTCCACCAGCTGCCAAGTCTGTGGTTGAGAACCT < 41bp 0.808814702802538 0.523818279800056 0.25018936 0.3734865 prediction 0.569992846004964 Functional Loss - RNF181 ENSG00000168894 CDS Human protein_coding chr2:85823720 chr2:85823724 nonsynonymous SNV 0.792 1 25 hm5C_associated_SNPs_57043 0 0 1 0 2 RNF181 chr2:85823772 5'GT 85823772 Upstream 49bp
chr8 43147866 43147866 1 + G T LUAD 43147864 + 43147844 43147884 41 GCCTGGTGGGGTGAAGTCCCCAGAGCGGATCTCATCGTCAT GCCTGGTGGGGTGAAGTCCCCATAGCGGATCTCATCGTCAT < 41bp 0.842518852193266 0.557523021578059 0.90732145 0.39431566 prediction 0.569991661230414 Functional Loss - POTEA ENSG00000188877 ncRNA_exonic Human polymorphic_pseudogene chr8:43147864 chr8:43147866 . . 0 23 hm5C_associated_SNPs_57044 0 0 0 0 1 POTEA chr8:43147926 5'GT 43147926 Upstream 61bp
chr6 159183163 159183163 1 + G T UCEC 159183160 + 159183140 159183180 41 TGTTTGGTAGTGCTAGGAGCCAAGAATTTACCTGTGCGGCC TGTTTGGTAGTGCTAGGAGCCAATAATTTACCTGTGCGGCC < 41bp 0.78499042540252 0.404652420588529 0.35614315 0.27572715 prediction 0.569980850805039 Functional Loss - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159183160 chr6:159183163 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_57045 0 0 0 0 2 SYTL3 chr6:159183108 3'AG 159183108 Downstream 56bp
chr6 159183163 159183163 1 + G T UCEC 159183160 + 159183140 159183180 41 TGTTTGGTAGTGCTAGGAGCCAAGAATTTACCTGTGCGGCC TGTTTGGTAGTGCTAGGAGCCAATAATTTACCTGTGCGGCC < 41bp 0.78499042540252 0.404652420588529 0.35614315 0.27572715 prediction 0.569980850805039 Functional Loss - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159183160 chr6:159183163 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_57045 0 0 0 0 2 SYTL3 chr6:159183210 5'GT 159183210 Upstream 48bp
chr13 32360545 32360545 1 + G T UCEC 32360543 + 32360523 32360563 41 TCTGTCTAGCAATACGATAACGGAACTATCACCTCACCTTT TCTGTCTAGCAATACGATAACGTAACTATCACCTCACCTTT < 41bp 0.78497283552419 0.459089238228046 0.7897928 0.2433894 prediction 0.56994567104838 Functional Loss - RXFP2 ENSG00000133105 CDS Human protein_coding chr13:32360543 chr13:32360545 stopgain 0.408 1 23 hm5C_associated_SNPs_57047 0 0 0 0 2 RXFP2 chr13:32360520 3'AG 32360520 Downstream 26bp
chr13 32360545 32360545 1 + G T UCEC 32360543 + 32360523 32360563 41 TCTGTCTAGCAATACGATAACGGAACTATCACCTCACCTTT TCTGTCTAGCAATACGATAACGTAACTATCACCTCACCTTT < 41bp 0.78497283552419 0.459089238228046 0.7897928 0.2433894 prediction 0.56994567104838 Functional Loss - RXFP2 ENSG00000133105 CDS Human protein_coding chr13:32360543 chr13:32360545 stopgain 0.408 1 23 hm5C_associated_SNPs_57047 0 0 0 0 2 RXFP2 chr13:32360591 5'GT 32360591 Upstream 47bp
chr8 75924706 75924706 1 + G T LUAD 75924703 + 75924683 75924723 41 CTGGAAAGATCTGCAGAATCCTGGGCTGAAAGTTGCTTGTG CTGGAAAGATCTGCAGAATCCTGTGCTGAAAGTTGCTTGTG < 41bp 0.890170804979906 0.605230161374034 0.8463018 0.20129931 prediction 0.569881287211744 Functional Loss - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75924703 chr8:75924706 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_57054 0 0 1 0 2 CRISPLD1 chr8:75924668 3'AG 75924668 Downstream 39bp
chr8 75924706 75924706 1 + G T LUAD 75924703 + 75924683 75924723 41 CTGGAAAGATCTGCAGAATCCTGGGCTGAAAGTTGCTTGTG CTGGAAAGATCTGCAGAATCCTGTGCTGAAAGTTGCTTGTG < 41bp 0.890170804979906 0.605230161374034 0.8463018 0.20129931 prediction 0.569881287211744 Functional Loss - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75924703 chr8:75924706 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_57054 0 0 1 0 2 CRISPLD1 chr8:75924786 5'GT 75924786 Upstream 81bp
chr1 40882508 40882508 1 + G T THCA 40882506 + 40882486 40882526 41 CACAGCCTACCCCAGCTTCCCCGGGGTTACACCTCCTAACA CACAGCCTACCCCAGCTTCCCCTGGGTTACACCTCCTAACA < 41bp 0.784927227988717 0.44684913939613 0.9340372 0.23658612 prediction 0.569854455977433 Functional Loss - SMAP2 ENSG00000084070 CDS Human protein_coding chr1:40882506 chr1:40882508 nonsynonymous SNV 0.764 3 23 hm5C_associated_SNPs_57056 0 0 1 0 1 SMAP2 chr1:40882452 3'AG 40882452 Downstream 57bp
chr12 50492562 50492562 1 + G T THYM 50492559 + 50492539 50492579 41 GCTGAGTTCTACTTCCAGCCCTGGGCTCAGGAGGCTGTGTG GCTGAGTTCTACTTCCAGCCCTGTGCTCAGGAGGCTGTGTG < 41bp 0.784908643815475 0.393182576165553 0.13278335 0.14878917 prediction 0.569817287630951 Functional Loss - SMARCD1 ENSG00000066117 CDS Human protein_coding chr12:50492559 chr12:50492562 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_57058 0 0 1 0 2 SMARCD1 chr12:50492497 3'AG 50492497 Downstream 66bp
chr12 50492562 50492562 1 + G T THYM 50492559 + 50492539 50492579 41 GCTGAGTTCTACTTCCAGCCCTGGGCTCAGGAGGCTGTGTG GCTGAGTTCTACTTCCAGCCCTGTGCTCAGGAGGCTGTGTG < 41bp 0.784908643815475 0.393182576165553 0.13278335 0.14878917 prediction 0.569817287630951 Functional Loss - SMARCD1 ENSG00000066117 CDS Human protein_coding chr12:50492559 chr12:50492562 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_57058 0 0 1 0 2 SMARCD1 chr12:50492598 5'GT 50492598 Upstream 37bp
chr4 187175753 187175753 1 + A C rs4253316 187175749 + 187175729 187175769 41 TTTTCTCTCCTAGGCTTCCCCTGCAGGATGTTTGGCGCATC TTTTCTCTCCTAGGCTTCCCCTGCCGGATGTTTGGCGCATC < 41bp 0.784906387127228 0.377935631852978 0.39779335 0.29465342 prediction 0.569812774254457 Functional Loss - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187175749 chr4:187175753 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_57059 0 0 0 0 1 KLKB1 chr4:187175742 3'AG 187175742 Downstream 12bp
chr4 187175751 187175751 1 + G T LUAD 187175749 + 187175729 187175769 41 TTTTCTCTCCTAGGCTTCCCCTGCAGGATGTTTGGCGCATC TTTTCTCTCCTAGGCTTCCCCTTCAGGATGTTTGGCGCATC < 41bp 0.784906387127228 0.470881790230067 0.39779335 0.12809518 prediction 0.569812774254457 Functional Loss - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187175749 chr4:187175751 synonymous SNV . 0 23 hm5C_associated_SNPs_57060 0 0 0 0 1 KLKB1 chr4:187175742 3'AG 187175742 Downstream 10bp
chr2 172569285 172569285 1 + A T OV 172569281 + 172569261 172569301 41 TCCTACAACCATTTAGGACGCTGCATTGGGATACAGATCCA TCCTACAACCATTTAGGACGCTGCTTTGGGATACAGATCCA < 41bp 0.784877185244021 0.479909430884353 0.09459126 0.07371056 prediction 0.569754370488043 Functional Loss - DYNC1I2 ENSG00000077380 CDS Human protein_coding chr2:172569281 chr2:172569285 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_57065 0 0 1 0 2 DYNC1I2 chr2:172569277 3'AG 172569277 Downstream 9bp
chr2 172569285 172569285 1 + A T OV 172569281 + 172569261 172569301 41 TCCTACAACCATTTAGGACGCTGCATTGGGATACAGATCCA TCCTACAACCATTTAGGACGCTGCTTTGGGATACAGATCCA < 41bp 0.784877185244021 0.479909430884353 0.09459126 0.07371056 prediction 0.569754370488043 Functional Loss - DYNC1I2 ENSG00000077380 CDS Human protein_coding chr2:172569281 chr2:172569285 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_57065 0 0 1 0 2 DYNC1I2 chr2:172569336 5'GT 172569336 Upstream 52bp
chr1 9782376 9782376 1 + G T SARC 9782374 + 9782354 9782394 41 TACAGCAACGAGGAGGCAGGCAGCGGCGGCAGCGTGGGCAT TACAGCAACGAGGAGGCAGGCATCGGCGGCAGCGTGGGCAT < 41bp 0.78487156710832 0.435112338609166 0.74185705 0.54969436 prediction 0.569743134216639 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9782374 chr1:9782376 nonsynonymous SNV 0.165 2 23 hm5C_associated_SNPs_57066 0 0 1 0 1 PIK3CD chr1:9782414 5'GT 9782414 Upstream 39bp
chr11 59861472 59861472 1 + G T LIHC 59861470 + 59861450 59861490 41 TGATGCTGTTTCTCACCATTCTGGGACTTGGTAGTGCTGTG TGATGCTGTTTCTCACCATTCTTGGACTTGGTAGTGCTGTG < 41bp 0.784863809622761 0.459501505881309 0.5563819 0.08967847 prediction 0.569727619245522 Functional Loss - MS4A2 ENSG00000149534 CDS Human protein_coding chr11:59861470 chr11:59861472 synonymous SNV . 0 23 hm5C_associated_SNPs_57068 0 0 0 0 2 MS4A2 chr11:59861437 3'AG 59861437 Downstream 36bp
chr11 59861472 59861472 1 + G T LIHC 59861470 + 59861450 59861490 41 TGATGCTGTTTCTCACCATTCTGGGACTTGGTAGTGCTGTG TGATGCTGTTTCTCACCATTCTTGGACTTGGTAGTGCTGTG < 41bp 0.784863809622761 0.459501505881309 0.5563819 0.08967847 prediction 0.569727619245522 Functional Loss - MS4A2 ENSG00000149534 CDS Human protein_coding chr11:59861470 chr11:59861472 synonymous SNV . 0 23 hm5C_associated_SNPs_57068 0 0 0 0 2 MS4A2 chr11:59861535 5'GT 59861535 Upstream 64bp
chr19 45572367 45572367 1 + G T UCEC 45572365 + 45572345 45572385 41 CACAAGAAAAGATGATCCAGCAGGAGCATGAGCGGCAGGTG CACAAGAAAAGATGATCCAGCATGAGCATGAGCGGCAGGTG < 41bp 0.86026250387603 0.575398729525264 0.8807386 0.07848254 prediction 0.569727548701531 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45572365 chr19:45572367 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_57069 0 0 1 1 2 CLASRP chr19:45572324 3'AG 45572324 Downstream 44bp
chr19 45572367 45572367 1 + G T UCEC 45572365 + 45572345 45572385 41 CACAAGAAAAGATGATCCAGCAGGAGCATGAGCGGCAGGTG CACAAGAAAAGATGATCCAGCATGAGCATGAGCGGCAGGTG < 41bp 0.86026250387603 0.575398729525264 0.8807386 0.07848254 prediction 0.569727548701531 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45572365 chr19:45572367 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_57069 0 0 1 1 2 CLASRP chr19:45572382 5'GT 45572382 Upstream 16bp
chr11 65826424 65826424 1 + G T SARC 65826422 + 65826402 65826442 41 GTCCCGTGGCTCTGATTCCCCAGCAGCTGATGTTGAGATTG GTCCCGTGGCTCTGATTCCCCATCAGCTGATGTTGAGATTG < 41bp 0.853950063732904 0.56912347290688 0.10619435 0.012470603 prediction 0.56965318165205 Functional Loss - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65826422 chr11:65826424 nonsynonymous SNV 0.956 0 23 hm5C_associated_SNPs_57070 0 0 1 0 1 SF3B2 chr11:65826516 5'GT 65826516 Upstream 93bp
chr1 151015491 151015491 1 + G T UCEC 151015488 + 151015468 151015508 41 AGACAGCTGAAAGGCTGGGCCGAGGTTGTATGTGGGATGTG AGACAGCTGAAAGGCTGGGCCGATGTTGTATGTGGGATGTG < 41bp 0.784804688901503 0.38835748727945 0.38680142 0.18521535 prediction 0.569609377803006 Functional Loss - BNIPL ENSG00000163141 CDS Human protein_coding chr1:151015488 chr1:151015491 nonsynonymous SNV 0.707 2 24 hm5C_associated_SNPs_57078 0 0 0 0 1 BNIPL chr1:151015432 3'AG 151015432 Downstream 60bp
chr8 124113152 124113152 1 + G T OV 124113150 + 124113130 124113170 41 CGATGAAGGAATTAGCTCATCAGCAATTAGCCCACATGGAC CGATGAAGGAATTAGCTCATCATCAATTAGCCCACATGGAC < 41bp 0.784772679011434 0.471263446393916 0.21580592 0.03601876 prediction 0.569545358022868 Functional Loss - TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124113150 chr8:124113152 nonsynonymous SNV 0.962 0 23 hm5C_associated_SNPs_57082 0 0 1 1 1 TBC1D31 chr8:124113247 5'GT 124113247 Upstream 96bp
chr2 98994248 98994248 1 + G T LIHC 98994246 + 98994226 98994266 41 TCCGGGCAGGGCTCCTTCACCGGCCAGGGGATCGCCAGGTA TCCGGGCAGGGCTCCTTCACCGTCCAGGGGATCGCCAGGTA < 41bp 0.78474682565636 0.464386816624641 0.507981 0.22521159 prediction 0.56949365131272 Functional Loss - CNGA3 ENSG00000144191 CDS Human protein_coding chr2:98994246 chr2:98994248 nonsynonymous SNV 0.025 0 23 hm5C_associated_SNPs_57085 0 0 0 0 2 CNGA3 chr2:98994150 3'AG 98994150 Downstream 99bp
chr2 98994248 98994248 1 + G T LIHC 98994246 + 98994226 98994266 41 TCCGGGCAGGGCTCCTTCACCGGCCAGGGGATCGCCAGGTA TCCGGGCAGGGCTCCTTCACCGTCCAGGGGATCGCCAGGTA < 41bp 0.78474682565636 0.464386816624641 0.507981 0.22521159 prediction 0.56949365131272 Functional Loss - CNGA3 ENSG00000144191 CDS Human protein_coding chr2:98994246 chr2:98994248 nonsynonymous SNV 0.025 0 23 hm5C_associated_SNPs_57085 0 0 0 0 2 CNGA3 chr2:98994263 5'GT 98994263 Upstream 16bp
chr19 36120572 36120572 1 + G T UCEC 36120570 + 36120550 36120590 41 TTATCGCGACCAACACATACCAGCAGGTACGGCTGAGCTAA TTATCGCGACCAACACATACCATCAGGTACGGCTGAGCTAA < 41bp 0.851195748138927 0.566457823638601 0.23582122 0.070528805 prediction 0.569475849000652 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36120570 chr19:36120572 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_57086 0 0 1 0 1 RBM42 chr19:36120575 5'GT 36120575 Upstream 4bp
chr3 67058415 67058415 1 + G T UCEC 67058412 + 67058392 67058432 41 CTTAACCCCCATGACTGTGCCTAGAATCCAGGGCTTAGCAG CTTAACCCCCATGACTGTGCCTATAATCCAGGGCTTAGCAG < 41bp 0.784737759633537 0.428637036829945 0.06549308 0.07363981 prediction 0.569475519267074 Functional Loss - KBTBD8 ENSG00000163376 CDS Human protein_coding chr3:67058412 chr3:67058415 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_57087 0 0 0 0 1 KBTBD8 chr3:67058346 3'AG 67058346 Downstream 70bp
chr12 6955994 6955994 1 + G T COAD 6955991 + 6955971 6956011 41 ACGATAACAGGGTGAGCTGCCTGGGAGTCACAGCTGACGGG ACGATAACAGGGTGAGCTGCCTGTGAGTCACAGCTGACGGG < 41bp 0.892282935701897 0.607562094876978 0.51523125 0.07954183 prediction 0.569441681649839 Functional Loss - CDCA3;GNB3 ENSG00000111664;ENSG00000111665 CDS Human other chr12:6955991 chr12:6955994 stopgain 0.989 1 24 hm5C_associated_SNPs_57090 0 0 1 0 1 CDCA3;GNB3 chr12:6955956 3'AG 6955956 Downstream 39bp
chr3 134851647 134851647 1 + G T LUAD 134851645 + 134851625 134851665 41 CTCCAAGGGAGACAGGTGGGCGGGATGATGTGACCTACAAC CTCCAAGGGAGACAGGTGGGCGTGATGATGTGACCTACAAC < 41bp 0.784701505461465 0.452011567950787 0.81466496 0.33643347 prediction 0.56940301092293 Functional Loss - EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134851645 chr3:134851647 synonymous SNV . 0 23 hm5C_associated_SNPs_57091 0 0 0 0 1 EPHB1 chr3:134851556 3'AG 134851556 Downstream 92bp
chr1 230807386 230807386 1 + G T UCEC 230807383 + 230807363 230807403 41 AGTCACAGGAGGTGCCATCTCCAGGTAATTTAAACAACCCT AGTCACAGGAGGTGCCATCTCCATGTAATTTAAACAACCCT < 41bp 0.784699752391099 0.401820415361134 0.9031906 0.505118 prediction 0.569399504782198 Functional Loss - COG2 ENSG00000135775 CDS Human protein_coding chr1:230807383 chr1:230807386 nonsynonymous SNV 0.127 4 24 hm5C_associated_SNPs_57092 0 0 1 0 1 COG2 chr1:230807386 5'GT 230807386 Upstream 1bp
chr5 135188461 135188461 1 + G T SARC 135188458 + 135188438 135188478 41 TCTGTCGGGCTGGGAGGGCCCGTGGACCTCATCAAGATCCG TCTGTCGGGCTGGGAGGGCCCGTTGACCTCATCAAGATCCG < 41bp 0.784672754773566 0.390278246527332 0.36351538 0.15955603 prediction 0.569345509547131 Functional Loss - SLC25A48 ENSG00000145832 CDS Human protein_coding chr5:135188458 chr5:135188461 synonymous SNV . 0 24 hm5C_associated_SNPs_57093 0 0 0 0 1 SLC25A48 chr5:135188510 5'GT 135188510 Upstream 50bp
chr5 225677 225677 1 + G T UCEC 225674 + 225654 225694 41 CAGGCCCCCGCCGCCGTGGTCGAGGTGATGGGCGGGAGGCT CAGGCCCCCGCCGCCGTGGTCGATGTGATGGGCGGGAGGCT < 41bp 0.784663018954211 0.388937570379944 0.927886 0.7881746 prediction 0.569326037908423 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:225674 chr5:225677 nonsynonymous SNV 0.414 3 24 hm5C_associated_SNPs_57094 0 0 1 0 1 SDHA chr5:225677 5'GT 225677 Upstream 1bp
chr12 20854311 20854311 1 + G T UCEC 20854309 + 20854289 20854329 41 AAGCATTGGCAGAAGGCTATCTGAAGAGCACCATCACTCAG AAGCATTGGCAGAAGGCTATCTTAAGAGCACCATCACTCAG < 41bp 0.845518203020187 0.560872640272296 0.058276474 0.01787141 prediction 0.569291125495783 Functional Loss - SLCO1C1 ENSG00000139155 CDS Human protein_coding chr12:20854309 chr12:20854311 synonymous SNV . 0 23 hm5C_associated_SNPs_57096 0 0 0 0 2 SLCO1C1 chr12:20854252 3'AG 20854252 Downstream 60bp
chr12 20854311 20854311 1 + G T UCEC 20854309 + 20854289 20854329 41 AAGCATTGGCAGAAGGCTATCTGAAGAGCACCATCACTCAG AAGCATTGGCAGAAGGCTATCTTAAGAGCACCATCACTCAG < 41bp 0.845518203020187 0.560872640272296 0.058276474 0.01787141 prediction 0.569291125495783 Functional Loss - SLCO1C1 ENSG00000139155 CDS Human protein_coding chr12:20854309 chr12:20854311 synonymous SNV . 0 23 hm5C_associated_SNPs_57096 0 0 0 0 2 SLCO1C1 chr12:20854393 5'GT 20854393 Upstream 83bp
chr11 107521086 107521086 1 + G T TGCT 107521084 + 107521064 107521104 41 TTTCGCGGAAAGGGATGCCACAGCAGCTCAGCAGGTCCTGT TTTCGCGGAAAGGGATGCCACATCAGCTCAGCAGGTCCTGT < 41bp 0.861528795053092 0.576885150299134 0.33693737 0.086381495 prediction 0.569287289507915 Functional Loss - ELMOD1 ENSG00000110675 CDS Human protein_coding chr11:107521084 chr11:107521086 nonsynonymous SNV 0.835 0 23 hm5C_associated_SNPs_57097 0 0 0 0 2 ELMOD1 chr11:107521061 3'AG 107521061 Downstream 26bp
chr11 107521086 107521086 1 + G T TGCT 107521084 + 107521064 107521104 41 TTTCGCGGAAAGGGATGCCACAGCAGCTCAGCAGGTCCTGT TTTCGCGGAAAGGGATGCCACATCAGCTCAGCAGGTCCTGT < 41bp 0.861528795053092 0.576885150299134 0.33693737 0.086381495 prediction 0.569287289507915 Functional Loss - ELMOD1 ENSG00000110675 CDS Human protein_coding chr11:107521084 chr11:107521086 nonsynonymous SNV 0.835 0 23 hm5C_associated_SNPs_57097 0 0 0 0 2 ELMOD1 chr11:107521129 5'GT 107521129 Upstream 44bp
chr15 75188616 75188616 1 + G T OV 75188613 + 75188593 75188633 41 GAACCTGCTTACCCTGAAGCCTGGGGAGGCCATGTTTCTGG GAACCTGCTTACCCTGAAGCCTGTGGAGGCCATGTTTCTGG < 41bp 0.895956875775319 0.611313396416945 0.42915133 0.15933934 prediction 0.569286958716748 Functional Loss - MPI ENSG00000178802 CDS Human protein_coding chr15:75188613 chr15:75188616 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_57098 0 0 0 0 1 MPI chr15:75188666 5'GT 75188666 Upstream 51bp
chr2 70057203 70057203 1 + G T SARC 70057201 + 70057181 70057221 41 AAGCGGAGCAGCGGGTCCTTCTGCTACTGTCACCCTGACTC AAGCGGAGCAGCGGGTCCTTCTTCTACTGTCACCCTGACTC < 41bp 0.784628389220841 0.457020641375479 0.16026586 0.2097902 prediction 0.569256778441682 Functional Loss - GMCL1 ENSG00000087338 CDS Human protein_coding chr2:70057201 chr2:70057203 nonsynonymous SNV 0.984 1 23 hm5C_associated_SNPs_57099 0 0 1 0 1 GMCL1 chr2:70057284 5'GT 70057284 Upstream 82bp
chr19 57744021 57744021 1 + G T COAD 57744018 + 57743998 57744038 41 TACAAGGAGCTGCAGAAAAGCGAGAAATTAGATGAACAGCG TACAAGGAGCTGCAGAAAAGCGATAAATTAGATGAACAGCG < 41bp 0.894049896846593 0.609457981749612 0.6178023 0.6746725 prediction 0.569183830193962 Functional Loss - AURKC ENSG00000105146 CDS Human protein_coding chr19:57744018 chr19:57744021 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_57105 0 0 1 0 1 AURKC chr19:57744048 5'GT 57744048 Upstream 28bp
chr17 53851197 53851197 1 + G T LUSC 53851195 + 53851175 53851215 41 GGCGAGAGGTCTGGGGTGATCCGGGTGAAGCAATACAAGCA GGCGAGAGGTCTGGGGTGATCCTGGTGAAGCAATACAAGCA < 41bp 0.861145654969477 0.57656751920521 0.9380989 0.8500122 prediction 0.569156271528534 Functional Loss - PCTP ENSG00000141179 CDS Human protein_coding chr17:53851195 chr17:53851197 nonsynonymous SNV 0.935 5 23 hm5C_associated_SNPs_57108 0 0 1 1 1 PCTP chr17:53851256 5'GT 53851256 Upstream 60bp
chr1 47564900 47564900 1 + G T OV 47564898 + 47564878 47564918 41 TGGCAAAGTACCCTGAGCATCAGCAGAGATGCCGAGATGAA TGGCAAAGTACCCTGAGCATCATCAGAGATGCCGAGATGAA < 41bp 0.849457388399718 0.56489890523283 0.63931155 0.35114858 prediction 0.569116966333775 Functional Loss - CYP4Z1 ENSG00000186160 CDS Human protein_coding chr1:47564898 chr1:47564900 nonsynonymous SNV 0.192 3 23 hm5C_associated_SNPs_57110 0 0 0 0 1 CYP4Z1 chr1:47564956 5'GT 47564956 Upstream 57bp
chr1 20668947 20668947 1 + A T UCEC 20668943 + 20668923 20668963 41 AGCCCTTGCTGAACAGTGGTCAGGACCTGAACCAGGGCCCC AGCCCTTGCTGAACAGTGGTCAGGTCCTGAACCAGGGCCCC < 41bp 0.794915373885256 0.510381936189896 0.75752616 0.8295331 prediction 0.56906687539072 Functional Loss - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20668943 chr1:20668947 nonsynonymous SNV 0.888 1 25 hm5C_associated_SNPs_57112 0 0 0 0 1 VWA5B1 chr1:20668925 3'AG 20668925 Downstream 23bp
chr18 63530065 63530065 1 + G T UCEC 63530062 + 63530042 63530082 41 TGTGATGCTGACGGCGTAGCCCAGACCTGCAATGCAGAGGC TGTGATGCTGACGGCGTAGCCCATACCTGCAATGCAGAGGC < 41bp 0.784518396801921 0.400741961073912 0.27533662 0.11608946 prediction 0.569036793603843 Functional Loss - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63530062 chr18:63530065 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_57115 0 0 0 0 1 CDH7 chr18:63530153 5'GT 63530153 Upstream 89bp
chr18 8813162 8813162 1 + C T SKCM 8813160 + 8813140 8813180 41 ACCGGGAGAAGGTGGAACTTCTCGACCGCCTGGACAGAGAT ACCGGGAGAAGGTGGAACTTCTTGACCGCCTGGACAGAGAT < 41bp 0.790915901418718 0.506409708140185 0.6587434 0.14838713 prediction 0.569012386557064 Functional Loss - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8813160 chr18:8813162 synonymous SNV . 0 23 hm5C_associated_SNPs_57117 0 0 1 0 1 MTCL1 chr18:8813231 5'GT 8813231 Upstream 70bp
chr4 113567980 113567980 1 + A T BLCA 113567976 + 113567956 113567996 41 CCCAAAAATGTTAATCACAGCTGGATTGAAAGAGTATTTGG CCCAAAAATGTTAATCACAGCTGGTTTGAAAGAGTATTTGG < 41bp 0.784498948289089 0.482058448288973 0.14936638 0.24406397 prediction 0.568997896578177 Functional Loss - LARP7 ENSG00000174720 CDS Human protein_coding chr4:113567976 chr4:113567980 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_57118 0 0 1 0 1 LARP7 chr4:113567947 3'AG 113567947 Downstream 34bp
chr2 119727907 119727907 1 + G T UCEC 119727905 + 119727885 119727925 41 AGCGGGTAGACAACTTCACTCAGAACCCAGGTTTGGCCTCC AGCGGGTAGACAACTTCACTCATAACCCAGGTTTGGCCTCC < 41bp 0.784488691707171 0.450693366405297 0.39083803 0.08159065 prediction 0.568977383414342 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119727905 chr2:119727907 nonsynonymous SNV 0.769 1 23 hm5C_associated_SNPs_57120 0 0 0 0 1 MARCO chr2:119727914 5'GT 119727914 Upstream 8bp
chr10 26800771 26800771 1 + G T LUAD 26800768 + 26800748 26800788 41 GATGTTCTGGACAACCTTTTCGAGAAAACTCATTGTGACTG GATGTTCTGGACAACCTTTTCGATAAAACTCATTGTGACTG < 41bp 0.889020009472807 0.604542077861339 0.7505163 0.10109845 prediction 0.568955863222937 Functional Loss - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26800768 chr10:26800771 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_57122 0 0 0 0 2 APBB1IP chr10:26800676 3'AG 26800676 Downstream 96bp
chr10 26800771 26800771 1 + G T LUAD 26800768 + 26800748 26800788 41 GATGTTCTGGACAACCTTTTCGAGAAAACTCATTGTGACTG GATGTTCTGGACAACCTTTTCGATAAAACTCATTGTGACTG < 41bp 0.889020009472807 0.604542077861339 0.7505163 0.10109845 prediction 0.568955863222937 Functional Loss - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26800768 chr10:26800771 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_57122 0 0 0 0 2 APBB1IP chr10:26800835 5'GT 26800835 Upstream 65bp
chr1 152816014 152816014 1 + G T ACC 152816012 + 152815992 152816032 41 AAGCAATGTCACAGCAGAAGCAGCAATCTTGGAAGCCTCCA AAGCAATGTCACAGCAGAAGCATCAATCTTGGAAGCCTCCA < 41bp 0.842374717179324 0.557913771928192 0.11797202 0.051808298 prediction 0.568921890502264 Functional Loss - LCE6A ENSG00000235942 CDS Human protein_coding chr1:152816012 chr1:152816014 nonsynonymous SNV 0.557 1 23 hm5C_associated_SNPs_57125 0 0 0 0 1 LCE6A chr1:152815976 3'AG 152815976 Downstream 39bp
chr2 148680566 148680566 1 + C T STAD 148680564 + 148680544 148680584 41 TGGTACCCGGAGGTACATGGCTCCAGAGGTATTAGAGGGTG TGGTACCCGGAGGTACATGGCTTCAGAGGTATTAGAGGGTG < 41bp 0.798499799113568 0.514071980888633 0.88103735 0.18207687 prediction 0.568855636449869 Functional Loss - ACVR2A ENSG00000121989 CDS Human protein_coding chr2:148680564 chr2:148680566 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_57130 0 0 0 0 1 ACVR2A chr2:148680542 3'AG 148680542 Downstream 25bp
chr20 58348388 58348388 1 + G T LUAD 58348386 + 58348366 58348406 41 AAGAGTGCCGACCCTTCCCTCCGGGGCCAGCTCTCCACACC AAGAGTGCCGACCCTTCCCTCCTGGGCCAGCTCTCCACACC < 41bp 0.78441108940394 0.431544359070005 0.9494482 0.82528085 prediction 0.56882217880788 Functional Loss - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58348386 chr20:58348388 nonsynonymous SNV 0.398 3 23 hm5C_associated_SNPs_57132 0 0 0 0 1 PHACTR3 chr20:58348334 3'AG 58348334 Downstream 55bp
chr12 21680686 21680686 1 + G T COAD 21680683 + 21680663 21680703 41 GGTCGCCGCTTCATCTCCGACCAGAGCCGGAGAAAGGACCT GGTCGCCGCTTCATCTCCGACCATAGCCGGAGAAAGGACCT < 41bp 0.784408435810094 0.406021040122562 0.44388378 0.093168765 prediction 0.568816871620189 Functional Loss - SPX ENSG00000134548 CDS Human protein_coding chr12:21680683 chr12:21680686 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_57133 0 0 0 0 2 SPX chr12:21680661 3'AG 21680661 Downstream 26bp
chr12 21680686 21680686 1 + G T COAD 21680683 + 21680663 21680703 41 GGTCGCCGCTTCATCTCCGACCAGAGCCGGAGAAAGGACCT GGTCGCCGCTTCATCTCCGACCATAGCCGGAGAAAGGACCT < 41bp 0.784408435810094 0.406021040122562 0.44388378 0.093168765 prediction 0.568816871620189 Functional Loss - SPX ENSG00000134548 CDS Human protein_coding chr12:21680683 chr12:21680686 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_57133 0 0 0 0 2 SPX chr12:21680723 5'GT 21680723 Upstream 38bp
chr3 128976673 128976673 1 + A T CESC 128976669 + 128976649 128976689 41 GCCATCGTCAATCTGCCAGGCTGCAGTGCCAAAGAGCTGGC GCCATCGTCAATCTGCCAGGCTGCTGTGCCAAAGAGCTGGC < 41bp 0.784388688545482 0.445717006606721 0.13341859 0.11906555 prediction 0.568777377090965 Functional Loss - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128976669 chr3:128976673 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_57136 0 0 1 0 1 COPG1 chr3:128976703 5'GT 128976703 Upstream 31bp
chr16 2570848 2570848 1 + G T SARC 2570845 + 2570825 2570865 41 GAGGAGCGGCGCGTGGCCGACGAGCGGCGGGACTGCGGGGG GAGGAGCGGCGCGTGGCCGACGATCGGCGGGACTGCGGGGG < 41bp 0.784377118877567 0.402721751342364 0.3373288 0.089218765 prediction 0.568754237755134 Functional Loss - AMDHD2 ENSG00000162066 CDS Human protein_coding chr16:2570845 chr16:2570848 nonsynonymous SNV 0.779 0 24 hm5C_associated_SNPs_57137 0 0 1 0 2 AMDHD2 chr16:2570770 3'AG 2570770 Downstream 79bp
chr16 2570848 2570848 1 + G T SARC 2570845 + 2570825 2570865 41 GAGGAGCGGCGCGTGGCCGACGAGCGGCGGGACTGCGGGGG GAGGAGCGGCGCGTGGCCGACGATCGGCGGGACTGCGGGGG < 41bp 0.784377118877567 0.402721751342364 0.3373288 0.089218765 prediction 0.568754237755134 Functional Loss - AMDHD2 ENSG00000162066 CDS Human protein_coding chr16:2570845 chr16:2570848 nonsynonymous SNV 0.779 0 24 hm5C_associated_SNPs_57137 0 0 1 0 2 AMDHD2 chr16:2570906 5'GT 2570906 Upstream 59bp
chr13 113439477 113439477 1 + G T HNSC 113439475 + 113439455 113439495 41 GGAGAAGAGAATTGGGTGGACAGCAGGACCATCTACGTGGG GGAGAAGAGAATTGGGTGGACATCAGGACCATCTACGTGGG < 41bp 0.784375433283058 0.453998084713082 0.7758014 0.45830607 prediction 0.568750866566115 Functional Loss - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113439475 chr13:113439477 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_57138 0 0 1 0 1 ATP11A chr13:113439571 5'GT 113439571 Upstream 95bp
chr3 183884310 183884310 1 + G T LUSC 183884307 + 183884287 183884327 41 GCGGGAGATTGTGCACAAACCGGGGTATGGATGGAATGGGG GCGGGAGATTGTGCACAAACCGGTGTATGGATGGAATGGGG < 41bp 0.899139339810035 0.614768152098316 0.9046476 0.8068907 prediction 0.568742375423437 Functional Loss - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183884307 chr3:183884310 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_57140 0 0 1 0 2 DVL3 chr3:183884234 3'AG 183884234 Downstream 77bp
chr3 183884310 183884310 1 + G T LUSC 183884307 + 183884287 183884327 41 GCGGGAGATTGTGCACAAACCGGGGTATGGATGGAATGGGG GCGGGAGATTGTGCACAAACCGGTGTATGGATGGAATGGGG < 41bp 0.899139339810035 0.614768152098316 0.9046476 0.8068907 prediction 0.568742375423437 Functional Loss - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183884307 chr3:183884310 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_57140 0 0 1 0 2 DVL3 chr3:183884310 5'GT 183884310 Upstream 1bp
chr16 676121 676121 1 + G T LUAD 676118 + 676098 676138 41 AGAAGATCTGGAGGCCCAACCGAGGTGGGTGGGCGGGCGCC AGAAGATCTGGAGGCCCAACCGATGTGGGTGGGCGGGCGCC < 41bp 0.895523569551918 0.611161374370221 0.9095731 0.45136946 prediction 0.568724390363393 Functional Loss - RAB40C ENSG00000197562 CDS Human protein_coding chr16:676118 chr16:676121 nonsynonymous SNV 0.853 4 24 hm5C_associated_SNPs_57143 0 0 0 0 1 RAB40C chr16:676121 5'GT 676121 Upstream 1bp
chr10 74890559 74890559 1 + G T UCEC 74890557 + 74890537 74890577 41 AGGGCCCCTATACTCAGCAACAGAATGGGACTTTCCCATTC AGGGCCCCTATACTCAGCAACATAATGGGACTTTCCCATTC < 41bp 0.832776961674879 0.548423875174857 0.2407516 0.03199017 prediction 0.568706173000043 Functional Loss - NUDT13 ENSG00000166321 CDS Human protein_coding chr10:74890557 chr10:74890559 nonsynonymous SNV 0.665 0 23 hm5C_associated_SNPs_57144 0 0 0 0 1 NUDT13 chr10:74890461 3'AG 74890461 Downstream 99bp
chr20 44563407 44563407 1 + A C rs576532506 44563403 + 44563383 44563423 41 CGGCAAAACGGGCGGTCGAGCAGAACGTGTAGCCGCGTCCC CGGCAAAACGGGCGGTCGAGCAGACCGTGTAGCCGCGTCCC < 41bp 0.823330883545536 0.538997886186777 0.3406559 0.20897141 prediction 0.568665994717519 Functional Loss - PCIF1 ENSG00000100982 UTR5 Human protein_coding chr20:44563403 chr20:44563407 . . 0 25 hm5C_associated_SNPs_57148 0 0 1 0 1 PCIF1 chr20:44563443 5'GT 44563443 Upstream 37bp
chr21 45709905 45709905 1 + G T SARC 45709903 + 45709883 45709923 41 GCTAGGCTGGGCCAGCAGGGCAGCGTTCCCGCCCCTCTGGC GCTAGGCTGGGCCAGCAGGGCATCGTTCCCGCCCCTCTGGC < 41bp 0.869633439830879 0.585321928558315 0.3542512 0.07721311 prediction 0.568623022545128 Functional Loss - AIRE ENSG00000160224 CDS Human protein_coding chr21:45709903 chr21:45709905 nonsynonymous SNV 0.011 1 23 hm5C_associated_SNPs_57152 0 0 0 0 1 AIRE chr21:45709951 5'GT 45709951 Upstream 47bp
chr19 56180887 56180887 1 + G C LUSC 56180886 + 56180866 56180906 41 GGTGCAGATGGGCGGCCACCCGACTGAGGTCCTGTGCCTCA GGTGCAGATGGGCGGCCACCCCACTGAGGTCCTGTGCCTCA < 41bp 0.808685761681796 0.524413885629799 0.25354934 0.22853953 prediction 0.568543752103993 Functional Loss - U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56180886 chr19:56180887 synonymous SNV . 0 22 hm5C_associated_SNPs_57157 0 0 1 0 1 U2AF2 chr19:56180810 3'AG 56180810 Downstream 78bp
chr4 59449 59449 1 + G T LUAD 59446 + 59426 59466 41 ACTACAGGAACCTGGTCTCCCTGGGTGAGGATAACTTCAAT ACTACAGGAACCTGGTCTCCCTGTGTGAGGATAACTTCAAT < 41bp 0.784270780356106 0.417194934799818 0.2295174 0.06710088 prediction 0.568541560712212 Functional Loss - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:59446 chr4:59449 nonsynonymous SNV 0.632 3 24 hm5C_associated_SNPs_57158 0 0 1 0 1 ZNF595;ZNF718 chr4:59449 5'GT 59449 Upstream 1bp
chr4 59448 59448 1 + G T LUSC 59446 + 59426 59466 41 ACTACAGGAACCTGGTCTCCCTGGGTGAGGATAACTTCAAT ACTACAGGAACCTGGTCTCCCTTGGTGAGGATAACTTCAAT < 41bp 0.784270780356106 0.466669273973133 0.2295174 0.0915319 prediction 0.568541560712212 Functional Loss - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:59446 chr4:59448 synonymous SNV . 0 23 hm5C_associated_SNPs_57159 0 0 1 0 1 ZNF595;ZNF718 chr4:59449 5'GT 59449 Upstream 2bp
chr16 5129808 5129808 1 + G T UCEC 5129806 + 5129786 5129826 41 TTCTCTCGTCTGTGTGATAACAGGTACTGCCTGGGACCCTG TTCTCTCGTCTGTGTGATAACATGTACTGCCTGGGACCCTG < 41bp 0.784266747538708 0.444304682800893 0.80657405 0.18034351 prediction 0.568533495077415 Functional Loss - ALG1 ENSG00000033011 CDS Human protein_coding chr16:5129806 chr16:5129808 nonsynonymous SNV 0.986 5 23 hm5C_associated_SNPs_57160 0 0 0 0 1 ALG1 chr16:5129808 5'GT 5129808 Upstream 1bp
chr7 76134842 76134842 1 + A T OV 76134838 + 76134818 76134858 41 ACATTACGGGCCACGGCTATCCCGACCCCAACTACCTGCAG ACATTACGGGCCACGGCTATCCCGTCCCCAACTACCTGCAG < 41bp 0.814639077507732 0.530385634997157 0.20735493 0.1264365 prediction 0.56850688502115 Functional Loss - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76134838 chr7:76134842 nonsynonymous SNV 0.940 4 25 hm5C_associated_SNPs_57164 0 0 0 0 1 DTX2 chr7:76134914 5'GT 76134914 Upstream 73bp
chrX 72667550 72667550 1 + A T LUAD 72667546 + 72667526 72667566 41 CCAGTTCCCCCAGCAGGAGCCGCCACAGCCCCTATGCATGG CCAGTTCCCCCAGCAGGAGCCGCCTCAGCCCCTATGCATGG < 41bp 0.83605500821591 0.551886649746655 0.7018589 0.30253553 prediction 0.568336716938509 Functional Loss - CDX4 ENSG00000131264 CDS Human protein_coding chrX:72667546 chrX:72667550 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_57170 0 0 0 0 1 CDX4 chrX:72667591 5'GT 72667591 Upstream 42bp
chr19 38774304 38774304 1 + G T KIRP 38774301 + 38774281 38774321 41 TCGAAGGTGGTGGGCAGATGCCGGGCCTCCATGCCTAGGTG TCGAAGGTGGTGGGCAGATGCCGTGCCTCCATGCCTAGGTG < 41bp 0.784157292325339 0.383773951065537 0.9144719 0.7412012 prediction 0.568314584650679 Functional Loss - SPINT2 ENSG00000167642 CDS Human protein_coding chr19:38774301 chr19:38774304 synonymous SNV . 0 24 hm5C_associated_SNPs_57171 0 0 1 0 1 SPINT2 chr19:38774267 3'AG 38774267 Downstream 38bp
chr16 23359927 23359927 1 + G C LUSC 23359926 + 23359906 23359946 41 TCTGCAGGTGCCACTATGCACGTGAAGAAGTACCTGCTGAA TCTGCAGGTGCCACTATGCACCTGAAGAAGTACCTGCTGAA < 41bp 0.806784540709355 0.522657471612541 0.31694776 0.12326461 prediction 0.568254138193628 Functional Loss - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23359926 chr16:23359927 nonsynonymous SNV 0.207 0 22 hm5C_associated_SNPs_57174 0 0 0 0 1 SCNN1B chr16:23359913 3'AG 23359913 Downstream 15bp
chr11 59812219 59812219 1 + G T LUSC 59812216 + 59812196 59812236 41 GGAATATAGATCATGACCCTCAGGAAATCCATTTGGAGTGT GGAATATAGATCATGACCCTCAGTAAATCCATTTGGAGTGT < 41bp 0.884997676361615 0.600874586248989 0.39783937 0.069815814 prediction 0.568246180225252 Functional Loss - OOSP2 ENSG00000149507 CDS Human protein_coding chr11:59812216 chr11:59812219 stopgain 0.005 0 24 hm5C_associated_SNPs_57175 0 0 0 0 2 OOSP2 chr11:59812144 3'AG 59812144 Downstream 76bp
chr11 59812219 59812219 1 + G T LUSC 59812216 + 59812196 59812236 41 GGAATATAGATCATGACCCTCAGGAAATCCATTTGGAGTGT GGAATATAGATCATGACCCTCAGTAAATCCATTTGGAGTGT < 41bp 0.884997676361615 0.600874586248989 0.39783937 0.069815814 prediction 0.568246180225252 Functional Loss - OOSP2 ENSG00000149507 CDS Human protein_coding chr11:59812216 chr11:59812219 stopgain 0.005 0 24 hm5C_associated_SNPs_57175 0 0 0 0 2 OOSP2 chr11:59812247 5'GT 59812247 Upstream 29bp
chr1 161480729 161480729 1 + G T UCEC 161480727 + 161480707 161480747 41 GTAGTGGCCTTGATCTACTGCAGGAAAAAGCGGATTTCAGG GTAGTGGCCTTGATCTACTGCATGAAAAAGCGGATTTCAGG < 41bp 0.784109885620183 0.450657574760221 0.5080596 0.05822915 prediction 0.568219771240366 Functional Loss - FCGR2A ENSG00000143226 CDS Human protein_coding chr1:161480727 chr1:161480729 nonsynonymous SNV 0.013 2 23 hm5C_associated_SNPs_57176 0 0 1 0 1 FCGR2A chr1:161480746 5'GT 161480746 Upstream 18bp
chr17 32683558 32683558 1 + G T rs3136677 32683556 + 32683536 32683576 41 AACCTTCAACATGAAAGTCTCTGCAGTGCTTCTGTGCCTGC AACCTTCAACATGAAAGTCTCTTCAGTGCTTCTGTGCCTGC < 41bp 0.828279904464767 0.544179353261852 0.18846399 0.099827915 prediction 0.56820110240583 Functional Loss - CCL13 ENSG00000181374 CDS Human protein_coding chr17:32683556 chr17:32683558 nonsynonymous SNV 0.010 0 23 hm5C_associated_SNPs_57178 0 0 0 0 1 CCL13 chr17:32683621 5'GT 32683621 Upstream 64bp
chr19 9959825 9959825 1 + G C STAD 9959824 + 9959804 9959844 41 CTGCGGACGGGGGAGATGAGCGGGCCCGTGTTCACGGATTC CTGCGGACGGGGGAGATGAGCCGGCCCGTGTTCACGGATTC < 41bp 0.813261781043097 0.529179367652586 0.88504004 0.39376128 prediction 0.568164826781022 Functional Loss - PIN1 ENSG00000127445 CDS Human protein_coding chr19:9959824 chr19:9959825 nonsynonymous SNV 0.977 4 22 hm5C_associated_SNPs_57180 0 0 1 0 2 PIN1 chr19:9959766 3'AG 9959766 Downstream 60bp
chr19 9959825 9959825 1 + G C STAD 9959824 + 9959804 9959844 41 CTGCGGACGGGGGAGATGAGCGGGCCCGTGTTCACGGATTC CTGCGGACGGGGGAGATGAGCCGGCCCGTGTTCACGGATTC < 41bp 0.813261781043097 0.529179367652586 0.88504004 0.39376128 prediction 0.568164826781022 Functional Loss - PIN1 ENSG00000127445 CDS Human protein_coding chr19:9959824 chr19:9959825 nonsynonymous SNV 0.977 4 22 hm5C_associated_SNPs_57180 0 0 1 0 2 PIN1 chr19:9959871 5'GT 9959871 Upstream 47bp
chr19 57905574 57905574 1 + G T UCEC 57905572 + 57905552 57905592 41 TCAGGGTCCCCTGGCGATGGCAGAAATGGACCCTACACAGG TCAGGGTCCCCTGGCGATGGCATAAATGGACCCTACACAGG < 41bp 0.85324431492477 0.569176877689343 0.28370285 0.17392665 prediction 0.568134874470855 Functional Loss - ZNF548 ENSG00000188785;ENSG00000268533;ENSG00000269533 CDS Human other chr19:57905572 chr19:57905574 stopgain 0.189 0 23 hm5C_associated_SNPs_57181 0 0 1 0 1 ZNF548 chr19:57905591 5'GT 57905591 Upstream 18bp
chr10 116710901 116710901 1 + G T LGG 116710898 + 116710878 116710918 41 AATGTTGACCAGTATGTTGTCAGGGTCCAAGGTAAGAATAC AATGTTGACCAGTATGTTGTCAGTGTCCAAGGTAAGAATAC < 41bp 0.784064402746678 0.422688099270201 0.8971954 0.1622191 prediction 0.568128805493356 Functional Loss - TRUB1 ENSG00000165832 CDS Human protein_coding chr10:116710898 chr10:116710901 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_57183 0 0 1 0 2 TRUB1 chr10:116710853 3'AG 116710853 Downstream 49bp
chr10 116710901 116710901 1 + G T LGG 116710898 + 116710878 116710918 41 AATGTTGACCAGTATGTTGTCAGGGTCCAAGGTAAGAATAC AATGTTGACCAGTATGTTGTCAGTGTCCAAGGTAAGAATAC < 41bp 0.784064402746678 0.422688099270201 0.8971954 0.1622191 prediction 0.568128805493356 Functional Loss - TRUB1 ENSG00000165832 CDS Human protein_coding chr10:116710898 chr10:116710901 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_57183 0 0 1 0 2 TRUB1 chr10:116710908 5'GT 116710908 Upstream 8bp
chr1 64011660 64011660 1 + G T LGG 64011658 + 64011638 64011678 41 GAAATCATTAGTCATCAGTACAGGATGCAAATAGCTCAGAG GAAATCATTAGTCATCAGTACATGATGCAAATAGCTCAGAG < 41bp 0.830214065716677 0.546164644908346 0.38498545 0.18945813 prediction 0.568098841616661 Functional Loss - EFCAB7 ENSG00000203965 CDS Human protein_coding chr1:64011658 chr1:64011660 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_57186 0 0 1 0 1 EFCAB7 chr1:64011587 3'AG 64011587 Downstream 74bp
chr15 89631738 89631738 1 + G T rs553893155 89631735 + 89631715 89631755 41 CCATGAGCGCCGCTGGCAGCCGGGGAGCTGCAGGAACCAGA CCATGAGCGCCGCTGGCAGCCGGTGAGCTGCAGGAACCAGA < 41bp 0.784043657873683 0.439048144620911 0.858034 0.27543584 prediction 0.568087315747366 Functional Loss - ABHD2 ENSG00000140526 UTR5 Human protein_coding chr15:89631735 chr15:89631738 . . 0 24 hm5C_associated_SNPs_57187 0 0 1 0 1 ABHD2 chr15:89631794 5'GT 89631794 Upstream 57bp
chr1 158325820 158325820 1 + G T LUSC 158325818 + 158325798 158325838 41 CCGAGCAACCCTGGATGTGGCGGCTGGGGAGGCAGCTGGCC CCGAGCAACCCTGGATGTGGCGTCTGGGGAGGCAGCTGGCC < 41bp 0.815159778013891 0.531121580320347 0.9010124 0.74806887 prediction 0.568076395387088 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325818 chr1:158325820 nonsynonymous SNV 0.008 0 23 hm5C_associated_SNPs_57190 0 0 0 0 1 CD1E chr1:158325895 5'GT 158325895 Upstream 76bp
chr20 31811717 31811717 1 + G T SKCM 31811715 + 31811695 31811735 41 CAGCACAAGTGGCCCCAGGGCTGGTGGGCTGGCTAATCAGC CAGCACAAGTGGCCCCAGGGCTTGTGGGCTGGCTAATCAGC < 41bp 0.784036920815244 0.443301097141778 0.11727601 0.098569214 prediction 0.568073841630488 Functional Loss - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31811715 chr20:31811717 synonymous SNV . 0 23 hm5C_associated_SNPs_57191 0 0 0 0 1 BPIFA3 chr20:31811767 5'GT 31811767 Upstream 51bp
chrX 101823515 101823515 1 + G T LUSC 101823512 + 101823492 101823532 41 CCACCCAGTCTGGGATGAAACTTGAGCAGTCTCAGAAGTGA CCACCCAGTCTGGGATGAAACTTTAGCAGTCTCAGAAGTGA < 41bp 0.784024445266195 0.418723163739148 0.28158486 0.08549428 prediction 0.56804889053239 Functional Loss - NXF4 ENSG00000196970 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:101823512 chrX:101823515 . . 0 24 hm5C_associated_SNPs_57194 0 0 0 0 1 NXF4 chrX:101823528 5'GT 101823528 Upstream 14bp
chrX 107084615 107084615 1 + G T BLCA 107084612 + 107084592 107084632 41 AATGATCGATTTGAGAAACTCAAGGTAAGGGATCTGGGGAG AATGATCGATTTGAGAAACTCAATGTAAGGGATCTGGGGAG < 41bp 0.784022246446687 0.405611777520934 0.8569739 0.42499003 prediction 0.568044492893375 Functional Loss - MID2 ENSG00000080561 CDS Human protein_coding chrX:107084612 chrX:107084615 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_57196 0 0 0 0 1 MID2 chrX:107084615 5'GT 107084615 Upstream 1bp
chr1 45101249 45101249 1 + G T UCEC 45101246 + 45101226 45101266 41 GGAAAATGAAACGGAGGAAGCAAGATGAAGGGCAGGTATGT GGAAAATGAAACGGAGGAAGCAATATGAAGGGCAGGTATGT < 41bp 0.784009384521305 0.407289832095301 0.5471431 0.28266126 prediction 0.56801876904261 Functional Loss - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45101246 chr1:45101249 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_57198 0 0 1 0 3 RNF220 chr1:45101217 3'AG 45101217 Downstream 33bp
chr1 45101249 45101249 1 + G T UCEC 45101246 + 45101226 45101266 41 GGAAAATGAAACGGAGGAAGCAAGATGAAGGGCAGGTATGT GGAAAATGAAACGGAGGAAGCAATATGAAGGGCAGGTATGT < 41bp 0.784009384521305 0.407289832095301 0.5471431 0.28266126 prediction 0.56801876904261 Functional Loss - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45101246 chr1:45101249 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_57198 0 0 1 0 3 RNF220 chr1:45101260 5'GT 45101260 Upstream 12bp
chr1 45101249 45101249 1 + G T UCEC 45101246 + 45101226 45101266 41 GGAAAATGAAACGGAGGAAGCAAGATGAAGGGCAGGTATGT GGAAAATGAAACGGAGGAAGCAATATGAAGGGCAGGTATGT < 41bp 0.784009384521305 0.407289832095301 0.5471431 0.28266126 prediction 0.56801876904261 Functional Loss - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45101246 chr1:45101249 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_57198 0 0 1 0 3 RNF220 chr1:45101338 5'GT 45101338 Upstream 90bp
chr4 88583159 88583159 1 + G T UCEC 88583156 + 88583136 88583176 41 GCACTCAGTCAGAGGAGGGCCTGGGCTCTGATGATCATCAA GCACTCAGTCAGAGGAGGGCCTGTGCTCTGATGATCATCAA < 41bp 0.885393154513477 0.601394130618629 0.11589143 0.08152354 prediction 0.567998047789696 Functional Loss - DMP1 ENSG00000152592 CDS Human protein_coding chr4:88583156 chr4:88583159 nonsynonymous SNV 0.026 3 24 hm5C_associated_SNPs_57200 0 0 0 0 1 DMP1 chr4:88583114 3'AG 88583114 Downstream 46bp
chr1 152770314 152770314 1 + A T LUAD 152770310 + 152770290 152770330 41 AGCAGCAGTGCCAGCCCCCTCCCAAGTGCACTCCCAAGTGC AGCAGCAGTGCCAGCCCCCTCCCATGTGCACTCCCAAGTGC < 41bp 0.783990299470581 0.476964559630234 0.16282433 0.113713056 prediction 0.567980598941163 Functional Loss - LCE1D ENSG00000172155 CDS Human protein_coding chr1:152770310 chr1:152770314 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_57201 0 0 0 0 1 LCE1D chr1:152770249 3'AG 152770249 Downstream 66bp
chr1 27677312 27677312 1 + G T HNSC 27677309 + 27677289 27677329 41 CCGTCCCGCAGGCCGAGCTTCAGGGCCGCGTGCTGAGCCTG CCGTCCCGCAGGCCGAGCTTCAGTGCCGCGTGCTGAGCCTG < 41bp 0.897515445748016 0.613534161810293 0.92922056 0.3059308 prediction 0.567962567875446 Functional Loss - SYTL1 ENSG00000142765 CDS Human protein_coding chr1:27677309 chr1:27677312 nonsynonymous SNV 0.801 4 24 hm5C_associated_SNPs_57204 0 0 1 0 1 SYTL1 chr1:27677285 3'AG 27677285 Downstream 28bp
chr8 22472959 22472959 1 + G T GBM 22472957 + 22472937 22472977 41 GGTGGCGCTTTGCCGAGTTTCAGTACCTGCAGCCGGGACCC GGTGGCGCTTTGCCGAGTTTCATTACCTGCAGCCGGGACCC < 41bp 0.783974421928702 0.435102560625683 0.85000575 0.51428443 prediction 0.567948843857403 Functional Loss - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22472957 chr8:22472959 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_57205 0 0 1 0 1 CCAR2 chr8:22472938 3'AG 22472938 Downstream 22bp
chr17 4645286 4645286 1 + G T READ 4645284 + 4645264 4645304 41 GCGGACATGGGGTCCCCGGCCAGGCTTCACCTTTGCTTCCC GCGGACATGGGGTCCCCGGCCATGCTTCACCTTTGCTTCCC < 41bp 0.78396366608164 0.445802771017465 0.86206156 0.09476021 prediction 0.56792733216328 Functional Loss - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4645284 chr17:4645286 nonsynonymous SNV 0.953 3 23 hm5C_associated_SNPs_57206 0 0 0 0 2 ZMYND15 chr17:4645210 3'AG 4645210 Downstream 77bp
chr17 4645286 4645286 1 + G T READ 4645284 + 4645264 4645304 41 GCGGACATGGGGTCCCCGGCCAGGCTTCACCTTTGCTTCCC GCGGACATGGGGTCCCCGGCCATGCTTCACCTTTGCTTCCC < 41bp 0.78396366608164 0.445802771017465 0.86206156 0.09476021 prediction 0.56792733216328 Functional Loss - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4645284 chr17:4645286 nonsynonymous SNV 0.953 3 23 hm5C_associated_SNPs_57206 0 0 0 0 2 ZMYND15 chr17:4645365 5'GT 4645365 Upstream 80bp
chr20 62724306 62724306 1 + G T STAD 62724304 + 62724284 62724324 41 CTTGTCATGTACGTCATCCTCAGGTAGGCTGGGCCCCAAGG CTTGTCATGTACGTCATCCTCATGTAGGCTGGGCCCCAAGG < 41bp 0.783962342928513 0.44004752539036 0.8527315 0.11147624 prediction 0.567924685857026 Functional Loss - OPRL1 ENSG00000125510 CDS Human protein_coding chr20:62724304 chr20:62724306 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_57207 0 0 0 0 1 OPRL1 chr20:62724306 5'GT 62724306 Upstream 1bp
chr12 113871991 113871991 1 + G T COAD 113871989 + 113871969 113872009 41 GAGTTGGCCAAGAGGGACGGCTGGGAGAATGTCCCCCCGTT GAGTTGGCCAAGAGGGACGGCTTGGAGAATGTCCCCCCGTT < 41bp 0.783945970457776 0.440770566778773 0.88058513 0.3676277 prediction 0.567891940915553 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113871989 chr12:113871991 nonsynonymous SNV 0.904 1 23 hm5C_associated_SNPs_57211 0 0 0 0 2 SDSL chr12:113871939 3'AG 113871939 Downstream 53bp
chr12 113871991 113871991 1 + G T COAD 113871989 + 113871969 113872009 41 GAGTTGGCCAAGAGGGACGGCTGGGAGAATGTCCCCCCGTT GAGTTGGCCAAGAGGGACGGCTTGGAGAATGTCCCCCCGTT < 41bp 0.783945970457776 0.440770566778773 0.88058513 0.3676277 prediction 0.567891940915553 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113871989 chr12:113871991 nonsynonymous SNV 0.904 1 23 hm5C_associated_SNPs_57211 0 0 0 0 2 SDSL chr12:113872027 5'GT 113872027 Upstream 37bp
chr12 113871992 113871992 1 + G T UCEC 113871989 + 113871969 113872009 41 GAGTTGGCCAAGAGGGACGGCTGGGAGAATGTCCCCCCGTT GAGTTGGCCAAGAGGGACGGCTGTGAGAATGTCCCCCCGTT < 41bp 0.783945970457776 0.38504162054282 0.88058513 0.33711383 prediction 0.567891940915553 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113871989 chr12:113871992 nonsynonymous SNV 0.908 1 24 hm5C_associated_SNPs_57212 0 0 0 0 2 SDSL chr12:113871939 3'AG 113871939 Downstream 54bp
chr12 113871992 113871992 1 + G T UCEC 113871989 + 113871969 113872009 41 GAGTTGGCCAAGAGGGACGGCTGGGAGAATGTCCCCCCGTT GAGTTGGCCAAGAGGGACGGCTGTGAGAATGTCCCCCCGTT < 41bp 0.783945970457776 0.38504162054282 0.88058513 0.33711383 prediction 0.567891940915553 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113871989 chr12:113871992 nonsynonymous SNV 0.908 1 24 hm5C_associated_SNPs_57212 0 0 0 0 2 SDSL chr12:113872027 5'GT 113872027 Upstream 36bp
chr16 72137022 72137022 1 + A C STAD 72137018 + 72136998 72137038 41 ATGAAGAGAAAGAGCGAAGCCAGCAGTGAATTTGCAAAGAA ATGAAGAGAAAGAGCGAAGCCAGCCGTGAATTTGCAAAGAA < 41bp 0.783941119589122 0.374114898610309 0.32070214 0.34455225 prediction 0.567882239178245 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72137018 chr16:72137022 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_57213 0 0 1 0 2 DHX38 chr16:72136973 3'AG 72136973 Downstream 50bp
chr16 72137022 72137022 1 + A C STAD 72137018 + 72136998 72137038 41 ATGAAGAGAAAGAGCGAAGCCAGCAGTGAATTTGCAAAGAA ATGAAGAGAAAGAGCGAAGCCAGCCGTGAATTTGCAAAGAA < 41bp 0.783941119589122 0.374114898610309 0.32070214 0.34455225 prediction 0.567882239178245 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72137018 chr16:72137022 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_57213 0 0 1 0 2 DHX38 chr16:72137110 5'GT 72137110 Upstream 89bp
chr2 234343445 234343445 1 + G T SARC 234343443 + 234343423 234343463 41 GTACAGCATGGACCACTTCTCAGGGATGCACAATTGGTACG GTACAGCATGGACCACTTCTCATGGATGCACAATTGGTACG < 41bp 0.872599018693536 0.588660849981097 0.95103943 0.91726017 prediction 0.567876337424879 Functional Loss - DGKD ENSG00000077044 CDS Human protein_coding chr2:234343443 chr2:234343445 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_57215 0 0 1 0 1 DGKD chr2:234343415 3'AG 234343415 Downstream 31bp
chr3 44672589 44672589 1 + G T UCEC 44672587 + 44672567 44672607 41 TCAAGGATCAGGACACTCTCCAGAAGGTGGTGAGTGCCCCA TCAAGGATCAGGACACTCTCCATAAGGTGGTGAGTGCCCCA < 41bp 0.854822540337118 0.5708881816312 0.45780784 0.15982866 prediction 0.567868717411836 Functional Loss - ZNF197;ZNF660-ZNF197 ENSG00000186448 CDS Human protein_coding chr3:44672587 chr3:44672589 nonsynonymous SNV 0.028 2 23 hm5C_associated_SNPs_57216 0 0 1 0 1 ZNF197;ZNF660-ZNF197 chr3:44672554 3'AG 44672554 Downstream 36bp
chr8 10387120 10387120 1 + G T OV 10387118 + 10387098 10387138 41 TTCCGTGGCAGGTGAGTATTCAGGCAAGAAGTGAACCTTTC TTCCGTGGCAGGTGAGTATTCATGCAAGAAGTGAACCTTTC < 41bp 0.783894155565143 0.439893306165099 0.88489753 0.3956099 prediction 0.567788311130287 Functional Loss - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10387118 chr8:10387120 nonsynonymous SNV 0.918 3 23 hm5C_associated_SNPs_57222 0 0 0 1 1 PRSS55 chr8:10387209 5'GT 10387209 Upstream 90bp
chr15 45560576 45560576 1 + G T COAD 45560574 + 45560554 45560594 41 ACATACAGGGGCTCACTTTCCAGGTAAAGGATTACATTTGT ACATACAGGGGCTCACTTTCCATGTAAAGGATTACATTTGT < 41bp 0.783884664684912 0.450249897572387 0.91476417 0.3958888 prediction 0.567769329369824 Functional Loss - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45560574 chr15:45560576 nonsynonymous SNV 0.990 4 23 hm5C_associated_SNPs_57226 0 0 0 0 1 SLC28A2 chr15:45560576 5'GT 45560576 Upstream 1bp
chr1 3348546 3348546 1 + G T BLCA 3348543 + 3348523 3348563 41 GGTGCAGGTGTGCTGAGGACCACGAAGGCGGTCTGTTAGCT GGTGCAGGTGTGCTGAGGACCACTAAGGCGGTCTGTTAGCT < 41bp 0.783883401162776 0.431973926394572 0.24580678 0.26600045 prediction 0.567766802325553 Functional Loss - PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3348543 chr1:3348546 stopgain 0.861 0 24 hm5C_associated_SNPs_57228 0 0 0 0 1 PRDM16 chr1:3348530 3'AG 3348530 Downstream 17bp
chr2 26502085 26502085 1 + G C LUAD 26502084 + 26502064 26502104 41 CCGCTGCCTTTGCTGTTTCTCGGCTGGAACAGGATGAATAT CCGCTGCCTTTGCTGTTTCTCCGCTGGAACAGGATGAATAT < 41bp 0.783875876152501 0.474059146587588 0.92481416 0.34419838 prediction 0.567751752305001 Functional Loss - HADHB ENSG00000138029 CDS Human protein_coding chr2:26502084 chr2:26502085 nonsynonymous SNV 0.976 5 22 hm5C_associated_SNPs_57231 0 0 1 0 2 HADHB chr2:26502003 3'AG 26502003 Downstream 83bp
chr2 26502085 26502085 1 + G C LUAD 26502084 + 26502064 26502104 41 CCGCTGCCTTTGCTGTTTCTCGGCTGGAACAGGATGAATAT CCGCTGCCTTTGCTGTTTCTCCGCTGGAACAGGATGAATAT < 41bp 0.783875876152501 0.474059146587588 0.92481416 0.34419838 prediction 0.567751752305001 Functional Loss - HADHB ENSG00000138029 CDS Human protein_coding chr2:26502084 chr2:26502085 nonsynonymous SNV 0.976 5 22 hm5C_associated_SNPs_57231 0 0 1 0 2 HADHB chr2:26502183 5'GT 26502183 Upstream 99bp
chr4 74364849 74364849 1 + G T COAD 74364846 + 74364826 74364866 41 TTCAGTTACCTCATCAGGCTCACGAAGATAGCTCCCCAACT TTCAGTTACCTCATCAGGCTCACTAAGATAGCTCCCCAACT < 41bp 0.783865485627859 0.410346843335196 0.07429609 0.022806793 prediction 0.567730971255719 Functional Loss - AFM ENSG00000079557 CDS Human protein_coding chr4:74364846 chr4:74364849 synonymous SNV . 0 24 hm5C_associated_SNPs_57232 0 0 0 0 1 AFM chr4:74364831 3'AG 74364831 Downstream 19bp
chr9 91961836 91961836 1 + G T rs62638732 91961833 + 91961813 91961853 41 CCTTTCCAAAGAATGTGCATCAGGGGAGAGAGGCCGCCGCA CCTTTCCAAAGAATGTGCATCAGTGGAGAGAGGCCGCCGCA < 41bp 0.903296480776528 0.619441078691478 0.9302248 0.20448267 prediction 0.567710804170099 Functional Loss - SECISBP2 ENSG00000187742 CDS Human protein_coding chr9:91961833 chr9:91961836 nonsynonymous SNV 0.025 2 24 hm5C_associated_SNPs_57234 0 0 1 0 1 SECISBP2 chr9:91961797 3'AG 91961797 Downstream 40bp
chr6 163483313 163483313 1 + G T COAD 163483310 + 163483290 163483330 41 ATGCTGGAACACGGTGGGAACAAGATCCTACCTGTCCTTCC ATGCTGGAACACGGTGGGAACAATATCCTACCTGTCCTTCC < 41bp 0.783847538171181 0.454483276096196 0.7677248 0.10521352 prediction 0.567695076342363 Functional Loss - PACRG ENSG00000112530 CDS Human protein_coding chr6:163483310 chr6:163483313 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_57236 0 0 0 0 1 PACRG chr6:163483353 5'GT 163483353 Upstream 41bp
chr8 38095663 38095663 1 + G T OV 38095660 + 38095640 38095680 41 GATGATTGGGGTTCAACACCCACGGAGCAGGGTCGACCAAG GATGATTGGGGTTCAACACCCACTGAGCAGGGTCGACCAAG < 41bp 0.783845800452806 0.406465669496804 0.45886272 0.346578 prediction 0.567691600905611 Functional Loss - DDHD2 ENSG00000085788 CDS Human protein_coding chr8:38095660 chr8:38095663 synonymous SNV . 0 24 hm5C_associated_SNPs_57237 0 0 1 0 2 DDHD2 chr8:38095607 3'AG 38095607 Downstream 57bp
chr8 38095663 38095663 1 + G T OV 38095660 + 38095640 38095680 41 GATGATTGGGGTTCAACACCCACGGAGCAGGGTCGACCAAG GATGATTGGGGTTCAACACCCACTGAGCAGGGTCGACCAAG < 41bp 0.783845800452806 0.406465669496804 0.45886272 0.346578 prediction 0.567691600905611 Functional Loss - DDHD2 ENSG00000085788 CDS Human protein_coding chr8:38095660 chr8:38095663 synonymous SNV . 0 24 hm5C_associated_SNPs_57237 0 0 1 0 2 DDHD2 chr8:38095727 5'GT 38095727 Upstream 65bp
chr12 1748930 1748930 1 + G C BLCA 1748929 + 1748909 1748949 41 AGCCGGGCCTGCCGCGAGGGCGAGCTCTCCACCTGCGGCTG AGCCGGGCCTGCCGCGAGGGCCAGCTCTCCACCTGCGGCTG < 41bp 0.814613127506432 0.530769304335588 0.4433219 0.056223422 prediction 0.567687646341687 Functional Loss - WNT5B ENSG00000111186 CDS Human protein_coding chr12:1748929 chr12:1748930 nonsynonymous SNV 0.992 1 22 hm5C_associated_SNPs_57238 0 0 0 0 1 WNT5B chr12:1748850 3'AG 1748850 Downstream 81bp
chr1 55144992 55144992 1 + G T UCEC 55144990 + 55144970 55145010 41 AGGACCTGCTGCTGGCCGCCCTGGAAGGGCTGAAAGGCAGC AGGACCTGCTGCTGGCCGCCCTTGAAGGGCTGAAAGGCAGC < 41bp 0.783842207615514 0.447984679832211 0.41233942 0.10446748 prediction 0.567684415231028 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55144990 chr1:55144992 synonymous SNV . 0 23 hm5C_associated_SNPs_57239 0 0 0 0 1 MROH7 chr1:55144936 3'AG 55144936 Downstream 57bp
chr22 44586464 44586464 1 + A T LUSC 44586460 + 44586440 44586480 41 ACAAGGACCTGTTGTCTACCCTGCACCTCCTTGTGGCCCTG ACAAGGACCTGTTGTCTACCCTGCTCCTCCTTGTGGCCCTG < 41bp 0.843512230377427 0.559673425152371 0.017322361 0.007649988 prediction 0.567677610450112 Functional Loss - PARVG ENSG00000138964 CDS Human protein_coding chr22:44586460 chr22:44586464 nonsynonymous SNV 0.736 3 25 hm5C_associated_SNPs_57240 0 0 0 0 2 PARVG chr22:44586431 3'AG 44586431 Downstream 34bp
chr22 44586464 44586464 1 + A T LUSC 44586460 + 44586440 44586480 41 ACAAGGACCTGTTGTCTACCCTGCACCTCCTTGTGGCCCTG ACAAGGACCTGTTGTCTACCCTGCTCCTCCTTGTGGCCCTG < 41bp 0.843512230377427 0.559673425152371 0.017322361 0.007649988 prediction 0.567677610450112 Functional Loss - PARVG ENSG00000138964 CDS Human protein_coding chr22:44586460 chr22:44586464 nonsynonymous SNV 0.736 3 25 hm5C_associated_SNPs_57240 0 0 0 0 2 PARVG chr22:44586546 5'GT 44586546 Upstream 83bp
chr10 135345227 135345227 1 + G T SARC 135345225 + 135345205 135345245 41 CACTTCCTGCTGGAAGCACTCAGGAAGACCCAAGGTGCGTA CACTTCCTGCTGGAAGCACTCATGAAGACCCAAGGTGCGTA < 41bp 0.852780288747938 0.568954265620818 0.9170457 0.6751702 prediction 0.567652046254241 Functional Loss - CYP2E1 ENSG00000130649 CDS Human protein_coding chr10:135345225 chr10:135345227 nonsynonymous SNV 0.278 3 23 hm5C_associated_SNPs_57242 0 0 0 0 1 CYP2E1 chr10:135345238 5'GT 135345238 Upstream 12bp
chr7 99045802 99045802 1 + G T LIHC 99045799 + 99045779 99045819 41 AAGACAGTTGTGTGCAAACACTGGCTGCGTGGCCTATGCAA AAGACAGTTGTGTGCAAACACTGTCTGCGTGGCCTATGCAA < 41bp 0.783824031518209 0.399457003661943 0.22948548 0.08365366 prediction 0.567648063036418 Functional Loss - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99045799 chr7:99045802 nonsynonymous SNV 0.973 4 24 hm5C_associated_SNPs_57243 0 0 1 0 2 CPSF4 chr7:99045744 3'AG 99045744 Downstream 59bp
chr7 99045802 99045802 1 + G T LIHC 99045799 + 99045779 99045819 41 AAGACAGTTGTGTGCAAACACTGGCTGCGTGGCCTATGCAA AAGACAGTTGTGTGCAAACACTGTCTGCGTGGCCTATGCAA < 41bp 0.783824031518209 0.399457003661943 0.22948548 0.08365366 prediction 0.567648063036418 Functional Loss - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99045799 chr7:99045802 nonsynonymous SNV 0.973 4 24 hm5C_associated_SNPs_57243 0 0 1 0 2 CPSF4 chr7:99045896 5'GT 99045896 Upstream 95bp
chr3 178546080 178546080 1 + C T SKCM 178546078 + 178546058 178546098 41 AACTTTCTCAGTACCCCTGCCTCCAGGTGTACGTTAACCTG AACTTTCTCAGTACCCCTGCCTTCAGGTGTACGTTAACCTG < 41bp 0.783823365482762 0.496235573692568 0.941003 0.18409577 prediction 0.567646730965524 Functional Loss - KCNMB2 ENSG00000197584 CDS Human protein_coding chr3:178546078 chr3:178546080 synonymous SNV . 0 23 hm5C_associated_SNPs_57245 0 0 0 0 1 KCNMB2 chr3:178546161 5'GT 178546161 Upstream 82bp
chr5 128442668 128442668 1 + G T LUAD 128442666 + 128442646 128442686 41 TGTGCATCCAACAAACTGCCCTGGAGCTAGTTGGCCGAGGA TGTGCATCCAACAAACTGCCCTTGAGCTAGTTGGCCGAGGA < 41bp 0.843151820634183 0.559335908673942 0.27699906 0.074124485 prediction 0.567631823920483 Functional Loss - ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128442666 chr5:128442668 synonymous SNV . 0 23 hm5C_associated_SNPs_57248 0 0 1 0 2 ISOC1 chr5:128442639 3'AG 128442639 Downstream 30bp
chr5 128442668 128442668 1 + G T LUAD 128442666 + 128442646 128442686 41 TGTGCATCCAACAAACTGCCCTGGAGCTAGTTGGCCGAGGA TGTGCATCCAACAAACTGCCCTTGAGCTAGTTGGCCGAGGA < 41bp 0.843151820634183 0.559335908673942 0.27699906 0.074124485 prediction 0.567631823920483 Functional Loss - ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128442666 chr5:128442668 synonymous SNV . 0 23 hm5C_associated_SNPs_57248 0 0 1 0 2 ISOC1 chr5:128442755 5'GT 128442755 Upstream 88bp
chr21 30411466 30411466 1 + G T STAD 30411464 + 30411444 30411484 41 CACCGAAAGAACTCTTTTCTCAGGTCTGTAAAAAGTGAGTA CACCGAAAGAACTCTTTTCTCATGTCTGTAAAAAGTGAGTA < 41bp 0.783749965589882 0.464114157894359 0.8756014 0.20713156 prediction 0.567499931179764 Functional Loss - USP16 ENSG00000156256 CDS Human protein_coding chr21:30411464 chr21:30411466 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_57258 0 0 1 0 2 USP16 chr21:30411466 5'GT 30411466 Upstream 1bp
chr21 30411466 30411466 1 + G T STAD 30411464 + 30411444 30411484 41 CACCGAAAGAACTCTTTTCTCAGGTCTGTAAAAAGTGAGTA CACCGAAAGAACTCTTTTCTCATGTCTGTAAAAAGTGAGTA < 41bp 0.783749965589882 0.464114157894359 0.8756014 0.20713156 prediction 0.567499931179764 Functional Loss - USP16 ENSG00000156256 CDS Human protein_coding chr21:30411464 chr21:30411466 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_57258 0 0 1 0 2 USP16 chr21:30411477 5'GT 30411477 Upstream 12bp
chr11 105948560 105948560 1 + G T SARC 105948558 + 105948538 105948578 41 TGCTGGCAGTGCGATCGATTCAGCCCGAGGAGAAGGAGCGC TGCTGGCAGTGCGATCGATTCATCCCGAGGAGAAGGAGCGC < 41bp 0.842713784233578 0.558966730908648 0.34468627 0.05547464 prediction 0.56749410664986 Functional Loss - AASDHPPT ENSG00000149313 CDS Human protein_coding chr11:105948558 chr11:105948560 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_57260 0 0 1 0 1 AASDHPPT chr11:105948620 5'GT 105948620 Upstream 61bp
chr5 140021618 140021618 1 + A T LUAD 140021614 + 140021594 140021634 41 TCTTACCTCCTCACCTACCTCTCCAGTCACAGCTCAGACTT TCTTACCTCCTCACCTACCTCTCCTGTCACAGCTCAGACTT < 41bp 0.862100650390277 0.578362722622271 0.9514621 0.06306553 prediction 0.567475855536011 Functional Loss - TMCO6 ENSG00000113119 CDS Human protein_coding chr5:140021614 chr5:140021618 nonsynonymous SNV 0.940 1 25 hm5C_associated_SNPs_57263 0 0 1 2 1 TMCO6 chr5:140021638 5'GT 140021638 Upstream 21bp
chr5 169461502 169461502 1 + G T LUAD 169461500 + 169461480 169461520 41 TGGAGAAGCTGCTGGATTACCGGGGTGTGATGACAGATGAG TGGAGAAGCTGCTGGATTACCGTGGTGTGATGACAGATGAG < 41bp 0.797254908710657 0.513521869585355 0.9047262 0.8151694 prediction 0.567466078250604 Functional Loss - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169461500 chr5:169461502 synonymous SNV . 0 23 hm5C_associated_SNPs_57264 0 0 1 0 2 DOCK2 chr5:169461403 3'AG 169461403 Downstream 100bp
chr5 169461502 169461502 1 + G T LUAD 169461500 + 169461480 169461520 41 TGGAGAAGCTGCTGGATTACCGGGGTGTGATGACAGATGAG TGGAGAAGCTGCTGGATTACCGTGGTGTGATGACAGATGAG < 41bp 0.797254908710657 0.513521869585355 0.9047262 0.8151694 prediction 0.567466078250604 Functional Loss - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169461500 chr5:169461502 synonymous SNV . 0 23 hm5C_associated_SNPs_57264 0 0 1 0 2 DOCK2 chr5:169461559 5'GT 169461559 Upstream 58bp
chr6 13615976 13615976 1 + G C LUAD 13615975 + 13615955 13615995 41 TCCTGAAGGAGAAGAGGAAGCGACGCGAGGAGCTGTTCATC TCCTGAAGGAGAAGAGGAAGCCACGCGAGGAGCTGTTCATC < 41bp 0.81951228336901 0.535790716944924 0.6069412 0.5715226 prediction 0.567443132848172 Functional Loss - NOL7 ENSG00000225921 CDS Human protein_coding chr6:13615975 chr6:13615976 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_57265 0 0 1 0 2 NOL7 chr6:13615944 3'AG 13615944 Downstream 33bp
chr6 13615976 13615976 1 + G C LUAD 13615975 + 13615955 13615995 41 TCCTGAAGGAGAAGAGGAAGCGACGCGAGGAGCTGTTCATC TCCTGAAGGAGAAGAGGAAGCCACGCGAGGAGCTGTTCATC < 41bp 0.81951228336901 0.535790716944924 0.6069412 0.5715226 prediction 0.567443132848172 Functional Loss - NOL7 ENSG00000225921 CDS Human protein_coding chr6:13615975 chr6:13615976 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_57265 0 0 1 0 2 NOL7 chr6:13616004 5'GT 13616004 Upstream 29bp
chr12 44166070 44166070 1 + G T UCEC 44166068 + 44166048 44166088 41 ATGCCTTTCTGTGACAAAGACAGGACATTGATGACACCTGT ATGCCTTTCTGTGACAAAGACATGACATTGATGACACCTGT < 41bp 0.783717530600599 0.480509447602531 0.57534456 0.056111515 prediction 0.567435061201197 Functional Loss - IRAK4 ENSG00000198001 CDS Human protein_coding chr12:44166068 chr12:44166070 nonsynonymous SNV 0.151 1 23 hm5C_associated_SNPs_57266 0 0 0 0 2 IRAK4 chr12:44165983 3'AG 44165983 Downstream 88bp
chr12 44166070 44166070 1 + G T UCEC 44166068 + 44166048 44166088 41 ATGCCTTTCTGTGACAAAGACAGGACATTGATGACACCTGT ATGCCTTTCTGTGACAAAGACATGACATTGATGACACCTGT < 41bp 0.783717530600599 0.480509447602531 0.57534456 0.056111515 prediction 0.567435061201197 Functional Loss - IRAK4 ENSG00000198001 CDS Human protein_coding chr12:44166068 chr12:44166070 nonsynonymous SNV 0.151 1 23 hm5C_associated_SNPs_57266 0 0 0 0 2 IRAK4 chr12:44166165 5'GT 44166165 Upstream 96bp
chr2 79349170 79349170 1 + G T HNSC 79349167 + 79349147 79349187 41 GTGTCTGTGCTCACCCAGGCCGAGGGTGCCTTTGTGGCCTC GTGTCTGTGCTCACCCAGGCCGATGGTGCCTTTGTGGCCTC < 41bp 0.903598816219127 0.619887320510046 0.8864852 0.14420417 prediction 0.567422991418162 Functional Loss - REG1A ENSG00000115386 CDS Human protein_coding chr2:79349167 chr2:79349170 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_57267 0 0 0 0 2 REG1A chr2:79349114 3'AG 79349114 Downstream 57bp
chr2 79349170 79349170 1 + G T HNSC 79349167 + 79349147 79349187 41 GTGTCTGTGCTCACCCAGGCCGAGGGTGCCTTTGTGGCCTC GTGTCTGTGCTCACCCAGGCCGATGGTGCCTTTGTGGCCTC < 41bp 0.903598816219127 0.619887320510046 0.8864852 0.14420417 prediction 0.567422991418162 Functional Loss - REG1A ENSG00000115386 CDS Human protein_coding chr2:79349167 chr2:79349170 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_57267 0 0 0 0 2 REG1A chr2:79349251 5'GT 79349251 Upstream 82bp
chr6 36988367 36988367 1 + G T UCEC 36988364 + 36988344 36988384 41 CCCCACTCCTTCCTGGTGTCCGGGAAGCAGCGCACCCTGGA CCCCACTCCTTCCTGGTGTCCGGTAAGCAGCGCACCCTGGA < 41bp 0.898450891866857 0.614744328920703 0.9102626 0.8705139 prediction 0.567413125892308 Functional Loss - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36988364 chr6:36988367 synonymous SNV . 0 24 hm5C_associated_SNPs_57268 0 0 0 0 2 FGD2 chr6:36988317 3'AG 36988317 Downstream 51bp
chr6 36988367 36988367 1 + G T UCEC 36988364 + 36988344 36988384 41 CCCCACTCCTTCCTGGTGTCCGGGAAGCAGCGCACCCTGGA CCCCACTCCTTCCTGGTGTCCGGTAAGCAGCGCACCCTGGA < 41bp 0.898450891866857 0.614744328920703 0.9102626 0.8705139 prediction 0.567413125892308 Functional Loss - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36988364 chr6:36988367 synonymous SNV . 0 24 hm5C_associated_SNPs_57268 0 0 0 0 2 FGD2 chr6:36988396 5'GT 36988396 Upstream 30bp
chr19 19166730 19166730 1 + G T LUSC 19166728 + 19166708 19166748 41 AAGGCACACCCGCAGAAGGCCGGCGTGCAGGTGGGCAGGGC AAGGCACACCCGCAGAAGGCCGTCGTGCAGGTGGGCAGGGC < 41bp 0.848467926487026 0.564762709156894 0.43672118 0.19377458 prediction 0.567410434660264 Functional Loss - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19166728 chr19:19166730 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_57269 0 0 1 0 1 ARMC6 chr19:19166737 5'GT 19166737 Upstream 8bp
chr21 45709550 45709550 1 + G T UCEC 45709547 + 45709527 45709567 41 CATCTCCTCCCAGGCGGCTCCAAGAAGTGCATCCAGGTTGG CATCTCCTCCCAGGCGGCTCCAATAAGTGCATCCAGGTTGG < 41bp 0.783685218661017 0.395118749794969 0.5618319 0.13186374 prediction 0.567370437322034 Functional Loss - AIRE ENSG00000160224 CDS Human protein_coding chr21:45709547 chr21:45709550 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_57272 0 0 0 0 1 AIRE chr21:45709540 3'AG 45709540 Downstream 11bp
chr12 50855098 50855098 1 + G T SARC 50855096 + 50855076 50855116 41 AGAAGGAGACTTCCACTTTGCAGGTGGAACAGAATGGGGAC AGAAGGAGACTTCCACTTTGCATGTGGAACAGAATGGGGAC < 41bp 0.783680156927192 0.486968610534623 0.8398726 0.3482015 prediction 0.567360313854383 Functional Loss - LARP4 ENSG00000161813 CDS Human protein_coding chr12:50855096 chr12:50855098 nonsynonymous SNV 0.908 0 23 hm5C_associated_SNPs_57273 0 0 1 0 1 LARP4 chr12:50855130 5'GT 50855130 Upstream 33bp
chr14 59789892 59789892 1 + G T rs17096074 59789890 + 59789870 59789910 41 CCGGGGGCCACAAGAAGGTTCTGCAGGCCATGCTGCACTAC CCGGGGGCCACAAGAAGGTTCTTCAGGCCATGCTGCACTAC < 41bp 0.7836763425349 0.462065863961369 0.421144 0.39244646 prediction 0.5673526850698 Functional Loss - DAAM1 ENSG00000100592 CDS Human protein_coding chr14:59789890 chr14:59789892 synonymous SNV . 0 23 hm5C_associated_SNPs_57275 0 0 1 0 1 DAAM1 chr14:59789943 5'GT 59789943 Upstream 52bp
chr22 39479798 39479798 1 + G C OV 39479797 + 39479777 39479817 41 ATGAACCTTGGGTCAGAGGACGGCATGAGACTTACCTGTGT ATGAACCTTGGGTCAGAGGACCGCATGAGACTTACCTGTGT < 41bp 0.812516900399518 0.528852927367337 0.6601686 0.28256026 prediction 0.567327946064363 Functional Loss - APOBEC3G ENSG00000239713 CDS Human protein_coding chr22:39479797 chr22:39479798 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_57277 0 0 0 0 2 APOBEC3G chr22:39479736 3'AG 39479736 Downstream 63bp
chr22 39479798 39479798 1 + G C OV 39479797 + 39479777 39479817 41 ATGAACCTTGGGTCAGAGGACGGCATGAGACTTACCTGTGT ATGAACCTTGGGTCAGAGGACCGCATGAGACTTACCTGTGT < 41bp 0.812516900399518 0.528852927367337 0.6601686 0.28256026 prediction 0.567327946064363 Functional Loss - APOBEC3G ENSG00000239713 CDS Human protein_coding chr22:39479797 chr22:39479798 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_57277 0 0 0 0 2 APOBEC3G chr22:39479889 5'GT 39479889 Upstream 92bp
chr5 79809532 79809532 1 + G T STAD 79809530 + 79809510 79809550 41 CAAACAGTGATAATACTCTACAGGAGTGGCTGACTGAAGTT CAAACAGTGATAATACTCTACATGAGTGGCTGACTGAAGTT < 41bp 0.84399760285338 0.560341662618609 0.31132424 0.08804047 prediction 0.567311880469543 Functional Loss - FAM151B ENSG00000152380 CDS Human protein_coding chr5:79809530 chr5:79809532 nonsynonymous SNV 0.987 1 23 hm5C_associated_SNPs_57278 0 0 0 0 1 FAM151B chr5:79809588 5'GT 79809588 Upstream 57bp
chr13 49649449 49649449 1 + G T UCEC 49649447 + 49649427 49649467 41 TATTCTGGTACAAGTTAACCCAGGAGAAGCATTTACAATAA TATTCTGGTACAAGTTAACCCATGAGAAGCATTTACAATAA < 41bp 0.783637290895522 0.484161361997964 0.4025947 0.016692936 prediction 0.567274581791044 Functional Loss - FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49649447 chr13:49649449 stopgain 0.960 1 23 hm5C_associated_SNPs_57281 0 0 1 0 2 FNDC3A chr13:49649425 3'AG 49649425 Downstream 25bp
chr13 49649449 49649449 1 + G T UCEC 49649447 + 49649427 49649467 41 TATTCTGGTACAAGTTAACCCAGGAGAAGCATTTACAATAA TATTCTGGTACAAGTTAACCCATGAGAAGCATTTACAATAA < 41bp 0.783637290895522 0.484161361997964 0.4025947 0.016692936 prediction 0.567274581791044 Functional Loss - FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49649447 chr13:49649449 stopgain 0.960 1 23 hm5C_associated_SNPs_57281 0 0 1 0 2 FNDC3A chr13:49649500 5'GT 49649500 Upstream 52bp
chr11 74023182 74023182 1 + G T rs77060670 74023180 + 74023160 74023200 41 ATAGGTGCGCAGGCAAAGAGCGGCAAGAGGACAGCTGGGAG ATAGGTGCGCAGGCAAAGAGCGTCAAGAGGACAGCTGGGAG < 41bp 0.783605400514801 0.481979580750762 0.26389307 0.12611827 prediction 0.567210801029602 Functional Loss - P4HA3-AS1 ENSG00000246211 ncRNA_exonic Human lincRNA chr11:74023180 chr11:74023182 . . 0 23 hm5C_associated_SNPs_57284 0 0 0 0 2 P4HA3-AS1 chr11:74023164 3'AG 74023164 Downstream 19bp
chr11 74023182 74023182 1 + G T rs77060670 74023180 + 74023160 74023200 41 ATAGGTGCGCAGGCAAAGAGCGGCAAGAGGACAGCTGGGAG ATAGGTGCGCAGGCAAAGAGCGTCAAGAGGACAGCTGGGAG < 41bp 0.783605400514801 0.481979580750762 0.26389307 0.12611827 prediction 0.567210801029602 Functional Loss - P4HA3-AS1 ENSG00000246211 ncRNA_exonic Human lincRNA chr11:74023180 chr11:74023182 . . 0 23 hm5C_associated_SNPs_57284 0 0 0 0 2 P4HA3-AS1 chr11:74023264 5'GT 74023264 Upstream 83bp
chr1 110029825 110029825 1 + G T UCEC 110029823 + 110029803 110029843 41 ACCAGCCTCCTGAGAAGACCCAGAAGGACAACCTCTGGTAA ACCAGCCTCCTGAGAAGACCCATAAGGACAACCTCTGGTAA < 41bp 0.829979110148419 0.546378840305482 0.8707727 0.17763102 prediction 0.567200539685874 Functional Loss - ATXN7L2 ENSG00000162650 CDS Human protein_coding chr1:110029823 chr1:110029825 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_57285 0 0 0 0 1 ATXN7L2 chr1:110029839 5'GT 110029839 Upstream 15bp
chr6 43225617 43225617 1 + G T SKCM 43225615 + 43225595 43225635 41 GCCGAGAATGAGGCCTTTGACTGGGAGAAGGCAGGCACCGA GCCGAGAATGAGGCCTTTGACTTGGAGAAGGCAGGCACCGA < 41bp 0.861728935441855 0.578132928593638 0.8333005 0.25501084 prediction 0.567192013696434 Functional Loss - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43225615 chr6:43225617 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_57287 0 0 0 0 2 TTBK1 chr6:43225550 3'AG 43225550 Downstream 68bp
chr6 43225617 43225617 1 + G T SKCM 43225615 + 43225595 43225635 41 GCCGAGAATGAGGCCTTTGACTGGGAGAAGGCAGGCACCGA GCCGAGAATGAGGCCTTTGACTTGGAGAAGGCAGGCACCGA < 41bp 0.861728935441855 0.578132928593638 0.8333005 0.25501084 prediction 0.567192013696434 Functional Loss - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43225615 chr6:43225617 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_57287 0 0 0 0 2 TTBK1 chr6:43225704 5'GT 43225704 Upstream 88bp
chr16 81301669 81301669 1 + A T BRCA 81301665 + 81301645 81301685 41 AGCCTTTCAGGTTGGATATTCTCAAGATGGCAACCGCATAC AGCCTTTCAGGTTGGATATTCTCATGATGGCAACCGCATAC < 41bp 0.849933339190434 0.56633788193211 0.33879 0.24849382 prediction 0.567190914516648 Functional Loss - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81301665 chr16:81301669 nonsynonymous SNV 0.997 5 25 hm5C_associated_SNPs_57288 0 0 0 0 1 BCO1 chr16:81301736 5'GT 81301736 Upstream 68bp
chr1 41284227 41284227 1 + G T LUAD 41284224 + 41284204 41284244 41 CCGTCATCGCCGCGGGTACCCAGGGCAACATCTTCGCCACG CCGTCATCGCCGCGGGTACCCAGTGCAACATCTTCGCCACG < 41bp 0.906013949772471 0.622426039755848 0.9398253 0.5646481 prediction 0.567175820033247 Functional Loss - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41284224 chr1:41284227 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_57290 0 0 1 0 1 KCNQ4 chr1:41284177 3'AG 41284177 Downstream 51bp
chr10 4868445 4868445 1 + G T rs2924275 4868443 + 4868423 4868463 41 GCAACGGCGGGTCGCCAGCGCCGCAGTAGCTCGCGCGGTGC GCAACGGCGGGTCGCCAGCGCCTCAGTAGCTCGCGCGGTGC < 41bp 0.832643369546142 0.549059056625381 0.32251966 0.0475024 prediction 0.567168625841522 Functional Loss - AKR1E2 ENSG00000165568 UTR5 Human protein_coding chr10:4868443 chr10:4868445 . . 0 23 hm5C_associated_SNPs_57292 0 0 0 0 1 AKR1E2 chr10:4868469 5'GT 4868469 Upstream 25bp
chr19 45211210 45211210 1 + G T UCEC 45211207 + 45211187 45211227 41 AGGACGTAACACTGACCGTGCAGGGCTACCCCAAGGACCTG AGGACGTAACACTGACCGTGCAGTGCTACCCCAAGGACCTG < 41bp 0.783560217222377 0.394769025177361 0.8234124 0.25711608 prediction 0.567120434444755 Functional Loss - CEACAM16 ENSG00000213892 CDS Human protein_coding chr19:45211207 chr19:45211210 nonsynonymous SNV 0.992 3 24 hm5C_associated_SNPs_57296 0 0 0 0 1 CEACAM16 chr19:45211133 3'AG 45211133 Downstream 78bp
chr2 118579625 118579625 1 + G T LUAD 118579623 + 118579603 118579643 41 TGGCCACACCAGGCCGTCTGCTGGACCATATGCAGGTAAGA TGGCCACACCAGGCCGTCTGCTTGACCATATGCAGGTAAGA < 41bp 0.7835588876835 0.47403775311906 0.25362894 0.23443815 prediction 0.567117775367 Functional Loss - DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579623 chr2:118579625 synonymous SNV . 0 23 hm5C_associated_SNPs_57297 0 0 1 0 1 DDX18 chr2:118579637 5'GT 118579637 Upstream 13bp
chr2 118579626 118579626 1 + G T LUAD 118579623 + 118579603 118579643 41 TGGCCACACCAGGCCGTCTGCTGGACCATATGCAGGTAAGA TGGCCACACCAGGCCGTCTGCTGTACCATATGCAGGTAAGA < 41bp 0.7835588876835 0.431149964858999 0.25362894 0.1771389 prediction 0.567117775367 Functional Loss - DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579623 chr2:118579626 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_57298 0 0 1 0 1 DDX18 chr2:118579637 5'GT 118579637 Upstream 12bp
chrX 15833946 15833946 1 + A T LUSC 15833942 + 15833922 15833962 41 ACAGCGAGGAAGAAACCTACCAACAGTTCCTAGACTTCTAT ACAGCGAGGAAGAAACCTACCAACTGTTCCTAGACTTCTAT < 41bp 0.783556886957043 0.461611137882971 0.20738065 0.65846896 prediction 0.567113773914087 Functional Loss - ZRSR2 ENSG00000169249 CDS Human protein_coding chrX:15833942 chrX:15833946 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_57299 0 0 1 0 1 ZRSR2 chrX:15834013 5'GT 15834013 Upstream 68bp
chr16 83994336 83994336 1 + G T LUAD 83994333 + 83994313 83994353 41 ACGCCATCCCCCACGTGGTTCTGGGCCGGAACCTCCCCGGG ACGCCATCCCCCACGTGGTTCTGTGCCGGAACCTCCCCGGG < 41bp 0.783552138342652 0.388848804637437 0.86458117 0.33452582 prediction 0.567104276685303 Functional Loss - OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83994333 chr16:83994336 nonsynonymous SNV 0.852 4 24 hm5C_associated_SNPs_57300 0 0 0 0 1 OSGIN1 chr16:83994365 5'GT 83994365 Upstream 30bp
chr4 56225592 56225592 1 + G T STAD 56225589 + 56225569 56225609 41 GCCTTACTCAATCTCTGTTCCTGGGAGCACCTTTTCCAAGC GCCTTACTCAATCTCTGTTCCTGTGAGCACCTTTTCCAAGC < 41bp 0.895628044772064 0.612078918656389 0.80056405 0.0683831 prediction 0.567098252231351 Functional Loss - SRD5A3 ENSG00000128039 CDS Human protein_coding chr4:56225589 chr4:56225592 stopgain 0.987 0 24 hm5C_associated_SNPs_57302 0 0 1 0 1 SRD5A3 chr4:56225513 3'AG 56225513 Downstream 80bp
chr3 1425058 1425058 1 + G T COAD 1425056 + 1425036 1425076 41 GTTTCATGGAATGCTATTGCCTGGAATAGAAACACTGGAAG GTTTCATGGAATGCTATTGCCTTGAATAGAAACACTGGAAG < 41bp 0.837718412604055 0.554184687919648 0.7526239 0.36089933 prediction 0.567067449368814 Functional Loss - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1425056 chr3:1425058 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_57305 0 0 0 0 2 CNTN6 chr3:1424977 3'AG 1424977 Downstream 82bp
chr3 1425058 1425058 1 + G T COAD 1425056 + 1425036 1425076 41 GTTTCATGGAATGCTATTGCCTGGAATAGAAACACTGGAAG GTTTCATGGAATGCTATTGCCTTGAATAGAAACACTGGAAG < 41bp 0.837718412604055 0.554184687919648 0.7526239 0.36089933 prediction 0.567067449368814 Functional Loss - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1425056 chr3:1425058 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_57305 0 0 0 0 2 CNTN6 chr3:1425092 5'GT 1425092 Upstream 35bp
chr14 54996780 54996780 1 + G T SARC 54996777 + 54996757 54996797 41 TTTTTTACAGCTGGCATAACCTTGACAACAGATTGCCTTGA TTTTTTACAGCTGGCATAACCTTTACAACAGATTGCCTTGA < 41bp 0.783528882384626 0.416636989439379 0.08869627 0.048035562 prediction 0.567057764769253 Functional Loss - CGRRF1 ENSG00000100532 CDS Human protein_coding chr14:54996777 chr14:54996780 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_57307 0 0 1 0 1 CGRRF1 chr14:54996767 3'AG 54996767 Downstream 14bp
chr11 44077751 44077751 1 + G T SARC 44077748 + 44077728 44077768 41 CCTCTAGGATTTTGGCATCTCTGGCTTCCGCTTTGGTGCTC CCTCTAGGATTTTGGCATCTCTGTCTTCCGCTTTGGTGCTC < 41bp 0.783528739200456 0.399618643377077 0.4073316 0.24056649 prediction 0.567057478400911 Functional Loss - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44077748 chr11:44077751 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_57308 0 0 0 0 1 ACCSL chr11:44077735 3'AG 44077735 Downstream 17bp
chr16 2121840 2121840 1 + G T PRAD 2121838 + 2121818 2121858 41 CGGCCCCCTTTCTCCTCCCACAGGGCCTCCTGGCCCGGCGC CGGCCCCCTTTCTCCTCCCACATGGCCTCCTGGCCCGGCGC < 41bp 0.783520587863939 0.433094062636117 0.93344337 0.8180927 prediction 0.567041175727878 Functional Loss - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2121838 chr16:2121840 nonsynonymous SNV 0.014 5 23 hm5C_associated_SNPs_57310 0 0 1 0 2 TSC2 chr16:2121785 3'AG 2121785 Downstream 56bp
chr16 2121840 2121840 1 + G T PRAD 2121838 + 2121818 2121858 41 CGGCCCCCTTTCTCCTCCCACAGGGCCTCCTGGCCCGGCGC CGGCCCCCTTTCTCCTCCCACATGGCCTCCTGGCCCGGCGC < 41bp 0.783520587863939 0.433094062636117 0.93344337 0.8180927 prediction 0.567041175727878 Functional Loss - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2121838 chr16:2121840 nonsynonymous SNV 0.014 5 23 hm5C_associated_SNPs_57310 0 0 1 0 2 TSC2 chr16:2121935 5'GT 2121935 Upstream 96bp
chr2 95943189 95943189 1 + G T LUSC 95943186 + 95943166 95943206 41 TGCAGGCCGGGCAGCAGGACCTGGAGCCAGCCATCCGGGAA TGCAGGCCGGGCAGCAGGACCTGTAGCCAGCCATCCGGGAA < 41bp 0.90194146151909 0.618437527676187 0.77188843 0.4351583 prediction 0.567007867685806 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95943186 chr2:95943189 stopgain 0.570 0 24 hm5C_associated_SNPs_57312 0 0 0 0 2 PROM2 chr2:95943112 3'AG 95943112 Downstream 78bp
chr2 95943189 95943189 1 + G T LUSC 95943186 + 95943166 95943206 41 TGCAGGCCGGGCAGCAGGACCTGGAGCCAGCCATCCGGGAA TGCAGGCCGGGCAGCAGGACCTGTAGCCAGCCATCCGGGAA < 41bp 0.90194146151909 0.618437527676187 0.77188843 0.4351583 prediction 0.567007867685806 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95943186 chr2:95943189 stopgain 0.570 0 24 hm5C_associated_SNPs_57312 0 0 0 0 2 PROM2 chr2:95943244 5'GT 95943244 Upstream 56bp
chr16 27367165 27367165 1 + G C HNSC 27367161 + 27367141 27367181 41 CCTTCGAGCAGCACCTCCTGCTGGGCGTCAGCGTTTCCTGC CCTTCGAGCAGCACCTCCTGCTGGCCGTCAGCGTTTCCTGC < 41bp 0.783498954032806 0.494551869351607 0.25481546 0.23305055 prediction 0.566997908065612 Functional Loss - IL4R ENSG00000077238 CDS Human protein_coding chr16:27367161 chr16:27367165 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_57313 0 0 1 0 2 IL4R chr16:27367129 3'AG 27367129 Downstream 37bp
chr16 27367165 27367165 1 + G C HNSC 27367161 + 27367141 27367181 41 CCTTCGAGCAGCACCTCCTGCTGGGCGTCAGCGTTTCCTGC CCTTCGAGCAGCACCTCCTGCTGGCCGTCAGCGTTTCCTGC < 41bp 0.783498954032806 0.494551869351607 0.25481546 0.23305055 prediction 0.566997908065612 Functional Loss - IL4R ENSG00000077238 CDS Human protein_coding chr16:27367161 chr16:27367165 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_57313 0 0 1 0 2 IL4R chr16:27367228 5'GT 27367228 Upstream 64bp
chr2 73471795 73471795 1 + G T KIRP 73471793 + 73471773 73471813 41 TGATGATGCTCGATGATTTGCTGCAGCTTAAAATGATTGGA TGATGATGCTCGATGATTTGCTTCAGCTTAAAATGATTGGA < 41bp 0.78348678955298 0.469119483864048 0.035550594 0.04749757 prediction 0.56697357910596 Functional Loss - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73471793 chr2:73471795 synonymous SNV . 0 23 hm5C_associated_SNPs_57314 0 0 1 0 1 CCT7 chr2:73471843 5'GT 73471843 Upstream 49bp
chrX 15536091 15536091 1 + G T SARC 15536089 + 15536069 15536109 41 GCAGTCAATGAAGAGAAACACAGAGTTCCCACCTTCCCAGA GCAGTCAATGAAGAGAAACACATAGTTCCCACCTTCCCAGA < 41bp 0.783439630097397 0.445258591309422 0.76571023 0.055381507 prediction 0.566879260194795 Functional Loss - BMX ENSG00000102010 CDS Human protein_coding chrX:15536089 chrX:15536091 nonsynonymous SNV 0.905 0 23 hm5C_associated_SNPs_57320 0 0 0 0 2 BMX chrX:15536052 3'AG 15536052 Downstream 40bp
chrX 15536091 15536091 1 + G T SARC 15536089 + 15536069 15536109 41 GCAGTCAATGAAGAGAAACACAGAGTTCCCACCTTCCCAGA GCAGTCAATGAAGAGAAACACATAGTTCCCACCTTCCCAGA < 41bp 0.783439630097397 0.445258591309422 0.76571023 0.055381507 prediction 0.566879260194795 Functional Loss - BMX ENSG00000102010 CDS Human protein_coding chrX:15536089 chrX:15536091 nonsynonymous SNV 0.905 0 23 hm5C_associated_SNPs_57320 0 0 0 0 2 BMX chrX:15536116 5'GT 15536116 Upstream 26bp
chr1 17575711 17575711 1 + G T SARC 17575708 + 17575688 17575728 41 GTGTGGCTGGCGTGGAGACCCTCGTGGACATTTATGGGTAA GTGTGGCTGGCGTGGAGACCCTCTTGGACATTTATGGGTAA < 41bp 0.783439566884224 0.414928956116349 0.27617204 0.066128135 prediction 0.566879133768449 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17575708 chr1:17575711 nonsynonymous SNV 0.990 2 24 hm5C_associated_SNPs_57321 0 0 0 0 1 PADI3 chr1:17575724 5'GT 17575724 Upstream 14bp
chr2 37473261 37473261 1 + C T CESC 37473259 + 37473239 37473279 41 TGTTATCATCGAGGAACTTTCTCAACGCATTGCATTAACTG TGTTATCATCGAGGAACTTTCTTAACGCATTGCATTAACTG < 41bp 0.783696202904319 0.500259870390433 0.12303713 0.09318733 prediction 0.566872665027773 Functional Loss - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37473259 chr2:37473261 stopgain 0.848 0 23 hm5C_associated_SNPs_57322 0 0 1 1 1 NDUFAF7 chr2:37473195 3'AG 37473195 Downstream 67bp
chr1 15978378 15978378 1 + G T BRCA 15978376 + 15978356 15978396 41 AGCAGAAGCCCTTCAAAAATCAGCAGAGGATGCAGGTATTT AGCAGAAGCCCTTCAAAAATCATCAGAGGATGCAGGTATTT < 41bp 0.838144136406237 0.554713148893498 0.5112957 0.3051733 prediction 0.566861975025477 Functional Loss - DDI2 ENSG00000197312 CDS Human protein_coding chr1:15978376 chr1:15978378 nonsynonymous SNV 0.607 0 23 hm5C_associated_SNPs_57323 0 0 1 0 1 DDI2 chr1:15978390 5'GT 15978390 Upstream 13bp
chr3 127379283 127379283 1 + G T UCEC 127379280 + 127379260 127379300 41 TTGAAGACACCAGCCAGGCTCAAGAGCTGCCAAACCTCCCC TTGAAGACACCAGCCAGGCTCAATAGCTGCCAAACCTCCCC < 41bp 0.783421300282217 0.401798444750778 0.82388633 0.044445217 prediction 0.566842600564434 Functional Loss - PODXL2 ENSG00000114631 CDS Human protein_coding chr3:127379280 chr3:127379283 stopgain 0.016 0 24 hm5C_associated_SNPs_57326 0 0 1 0 1 PODXL2 chr3:127379221 3'AG 127379221 Downstream 63bp
chr3 190967889 190967889 1 + G T SARC 190967887 + 190967867 190967907 41 TGGATCGGATTGGTAGAAACCGGCTTTCAAATTCCAGAGGC TGGATCGGATTGGTAGAAACCGTCTTTCAAATTCCAGAGGC < 41bp 0.783413446067514 0.479305038890461 0.15238014 0.108700305 prediction 0.566826892135028 Functional Loss - OSTN ENSG00000188729 CDS Human protein_coding chr3:190967887 chr3:190967889 synonymous SNV . 0 23 hm5C_associated_SNPs_57327 0 0 0 0 1 OSTN chr3:190967826 3'AG 190967826 Downstream 64bp
chr4 3443844 3443844 1 + G T LUAD 3443842 + 3443822 3443862 41 GGGTTCCAGCCCCAGCCTGGCGGGGTGAGCACTGACCTTGT GGGTTCCAGCCCCAGCCTGGCGTGGTGAGCACTGACCTTGT < 41bp 0.856173195406451 0.572764624196839 0.9346901 0.8587639 prediction 0.566817142419223 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3443842 chr4:3443844 nonsynonymous SNV 0.251 1 23 hm5C_associated_SNPs_57328 0 0 0 0 1 HGFAC chr4:3443845 5'GT 3443845 Upstream 2bp
chr17 58503193 58503193 1 + G T DLBC 58503190 + 58503170 58503210 41 AAGCTCCAGCGCCAGCCCTGCTAGAGACTCGCTCATGCGCC AAGCTCCAGCGCCAGCCCTGCTATAGACTCGCTCATGCGCC < 41bp 0.783389091267816 0.399169906761948 0.40932646 0.15041474 prediction 0.566778182535632 Functional Loss - C17orf64 ENSG00000141371 CDS Human protein_coding chr17:58503190 chr17:58503193 nonsynonymous SNV 0.044 0 24 hm5C_associated_SNPs_57332 0 0 0 0 2 C17orf64 chr17:58503144 3'AG 58503144 Downstream 50bp
chr17 58503193 58503193 1 + G T DLBC 58503190 + 58503170 58503210 41 AAGCTCCAGCGCCAGCCCTGCTAGAGACTCGCTCATGCGCC AAGCTCCAGCGCCAGCCCTGCTATAGACTCGCTCATGCGCC < 41bp 0.783389091267816 0.399169906761948 0.40932646 0.15041474 prediction 0.566778182535632 Functional Loss - C17orf64 ENSG00000141371 CDS Human protein_coding chr17:58503190 chr17:58503193 nonsynonymous SNV 0.044 0 24 hm5C_associated_SNPs_57332 0 0 0 0 2 C17orf64 chr17:58503245 5'GT 58503245 Upstream 53bp
chr8 48878870 48878870 1 + G T LUAD 48878868 + 48878848 48878888 41 ACGACCCGGGTGGAGATGGACCGCGGCCGCATTGCAGAGCC ACGACCCGGGTGGAGATGGACCTCGGCCGCATTGCAGAGCC < 41bp 0.783386602116201 0.431654281215491 0.78408563 0.44267532 prediction 0.566773204232403 Functional Loss - MCM4 ENSG00000104738 CDS Human protein_coding chr8:48878868 chr8:48878870 nonsynonymous SNV 0.148 4 23 hm5C_associated_SNPs_57334 0 0 1 0 1 MCM4 chr8:48878967 5'GT 48878967 Upstream 98bp
chr11 126126507 126126507 1 + G T UCEC 126126504 + 126126484 126126524 41 AAAACAAGTCATTTCTTTTCCTGGGCTGTGGCTGGACTGTG AAAACAAGTCATTTCTTTTCCTGTGCTGTGGCTGGACTGTG < 41bp 0.783382165083124 0.414144523954433 0.31846344 0.18966573 prediction 0.566764330166249 Functional Loss - FAM118B ENSG00000197798 CDS Human protein_coding chr11:126126504 chr11:126126507 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_57335 0 0 1 0 1 FAM118B chr11:126126462 3'AG 126126462 Downstream 46bp
chr10 126673377 126673377 1 + G T SARC 126673375 + 126673355 126673395 41 GAACAGCAAGAAAAACTGCTCAGGGAGTGGCTGGACTGCTG GAACAGCAAGAAAAACTGCTCATGGAGTGGCTGGACTGCTG < 41bp 0.840651554139763 0.557287584095925 0.9319116 0.8716508 prediction 0.566727940087677 Functional Loss - ZRANB1 ENSG00000019995 CDS Human protein_coding chr10:126673375 chr10:126673377 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_57338 0 0 1 0 1 ZRANB1 chr10:126673343 3'AG 126673343 Downstream 35bp
chr1 25166473 25166473 1 + G T LUSC 25166470 + 25166450 25166490 41 AGTTTTCTACACGTAAATTTCTGGATGGCAATGAAATGACA AGTTTTCTACACGTAAATTTCTGTATGGCAATGAAATGACA < 41bp 0.873638165558821 0.590287677534993 0.6982905 0.34273213 prediction 0.566700976047655 Functional Loss - CLIC4 ENSG00000169504 CDS Human protein_coding chr1:25166470 chr1:25166473 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_57341 0 0 1 0 1 CLIC4 chr1:25166532 5'GT 25166532 Upstream 60bp
chr20 34526625 34526625 1 + G T LUAD 34526623 + 34526603 34526643 41 TTTGTCCTCTCAACAGAAGCCGGGAGCATCCTGATCTGCCG TTTGTCCTCTCAACAGAAGCCGTGAGCATCCTGATCTGCCG < 41bp 0.860002479884817 0.576657032189356 0.7523564 0.20204201 prediction 0.566690895390922 Functional Loss - PHF20 ENSG00000025293 CDS Human protein_coding chr20:34526623 chr20:34526625 synonymous SNV . 0 23 hm5C_associated_SNPs_57344 0 0 1 0 1 PHF20 chr20:34526619 3'AG 34526619 Downstream 7bp
chr11 13398233 13398233 1 + G T COAD 13398231 + 13398211 13398251 41 CCCAACCTTCCCACAGCTCACAGCATCCCCCCACAGCATGG CCCAACCTTCCCACAGCTCACATCATCCCCCCACAGCATGG < 41bp 0.853054046023931 0.569716682200734 0.23849258 0.071049064 prediction 0.566674727646394 Functional Loss - ARNTL ENSG00000133794 CDS Human protein_coding chr11:13398231 chr11:13398233 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_57345 0 0 0 0 2 ARNTL chr11:13398187 3'AG 13398187 Downstream 47bp
chr11 13398233 13398233 1 + G T COAD 13398231 + 13398211 13398251 41 CCCAACCTTCCCACAGCTCACAGCATCCCCCCACAGCATGG CCCAACCTTCCCACAGCTCACATCATCCCCCCACAGCATGG < 41bp 0.853054046023931 0.569716682200734 0.23849258 0.071049064 prediction 0.566674727646394 Functional Loss - ARNTL ENSG00000133794 CDS Human protein_coding chr11:13398231 chr11:13398233 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_57345 0 0 0 0 2 ARNTL chr11:13398275 5'GT 13398275 Upstream 43bp
chr9 96435887 96435887 1 + G T UCEC 96435885 + 96435865 96435905 41 AGCCAGCCCCCGGCCTCCCCCAGCACACAGGAAGCCATTCA AGCCAGCCCCCGGCCTCCCCCATCACACAGGAAGCCATTCA < 41bp 0.783332145586849 0.442971740150865 0.274647 0.061259568 prediction 0.566664291173697 Functional Loss - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96435885 chr9:96435887 nonsynonymous SNV 0.983 4 23 hm5C_associated_SNPs_57346 0 0 1 0 1 PHF2 chr9:96435867 3'AG 96435867 Downstream 21bp
chr17 76128454 76128454 1 + G T UCEC 76128452 + 76128432 76128472 41 CACTGCAGGCCTCTTCGGCACAGGAATTCGGTCCTACTTCA CACTGCAGGCCTCTTCGGCACATGAATTCGGTCCTACTTCA < 41bp 0.868435680912735 0.585134121274738 0.47494474 0.23642614 prediction 0.566603119275993 Functional Loss - TMC8 ENSG00000167895 CDS Human protein_coding chr17:76128452 chr17:76128454 stopgain 0.929 1 23 hm5C_associated_SNPs_57349 0 0 0 0 1 TMC8 chr17:76128440 3'AG 76128440 Downstream 15bp
chr3 50679165 50679165 1 + G T LUAD 50679162 + 50679142 50679182 41 GAAGGTGGTGAGTTGTTCAGCAGGATTCAGGAGCGTGGCGA GAAGGTGGTGAGTTGTTCAGCAGTATTCAGGAGCGTGGCGA < 41bp 0.898886535809522 0.615597306859977 0.8374597 0.2295205 prediction 0.56657845789909 Functional Loss - MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50679162 chr3:50679165 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_57351 0 0 1 0 2 MAPKAPK3 chr3:50679138 3'AG 50679138 Downstream 28bp
chr3 50679165 50679165 1 + G T LUAD 50679162 + 50679142 50679182 41 GAAGGTGGTGAGTTGTTCAGCAGGATTCAGGAGCGTGGCGA GAAGGTGGTGAGTTGTTCAGCAGTATTCAGGAGCGTGGCGA < 41bp 0.898886535809522 0.615597306859977 0.8374597 0.2295205 prediction 0.56657845789909 Functional Loss - MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50679162 chr3:50679165 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_57351 0 0 1 0 2 MAPKAPK3 chr3:50679202 5'GT 50679202 Upstream 38bp
chr3 61734586 61734586 1 + G T UCEC 61734583 + 61734563 61734603 41 GGCTACGTTGGGGCCCTGCACGAGAATAGACACGGCAGCGC GGCTACGTTGGGGCCCTGCACGATAATAGACACGGCAGCGC < 41bp 0.85413204976314 0.570842987029112 0.69127953 0.44768 prediction 0.566578125468055 Functional Loss - PTPRG ENSG00000144724 CDS Human protein_coding chr3:61734583 chr3:61734586 nonsynonymous SNV 0.926 0 24 hm5C_associated_SNPs_57352 0 0 1 0 1 PTPRG chr3:61734656 5'GT 61734656 Upstream 71bp
chr19 6836567 6836567 1 + G T UCEC 6836565 + 6836545 6836585 41 TCACGAAGGCTGAGGCTGAACAGAACTGGTGGGAGGTACAG TCACGAAGGCTGAGGCTGAACATAACTGGTGGGAGGTACAG < 41bp 0.783246879929546 0.447264017942597 0.34691143 0.22594473 prediction 0.566493759859091 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6836565 chr19:6836567 nonsynonymous SNV 0.994 0 23 hm5C_associated_SNPs_57355 0 0 1 0 1 VAV1 chr19:6836579 5'GT 6836579 Upstream 13bp
chr12 12022821 12022821 1 + G T LUSC 12022819 + 12022799 12022839 41 AGCCCATCAACCTCTCTCATCGGGAAGACCTGGCTTACATG AGCCCATCAACCTCTCTCATCGTGAAGACCTGGCTTACATG < 41bp 0.783241500937768 0.457727031310896 0.9307797 0.3804952 prediction 0.566483001875535 Functional Loss - ETV6 ENSG00000139083 CDS Human protein_coding chr12:12022819 chr12:12022821 synonymous SNV . 0 23 hm5C_associated_SNPs_57357 0 0 0 0 1 ETV6 chr12:12022903 5'GT 12022903 Upstream 83bp
chr10 60936703 60936703 1 + G T HNSC 60936701 + 60936681 60936721 41 ACCTCAGCCTGGAGGCCATTCAGCTGTGCGACCGGGACGGT ACCTCAGCCTGGAGGCCATTCATCTGTGCGACCGGGACGGT < 41bp 0.783225587652102 0.498347845326451 0.30018044 0.12582281 prediction 0.566451175304204 Functional Loss - PHYHIPL ENSG00000165443 CDS Human protein_coding chr10:60936701 chr10:60936703 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_57362 0 0 1 0 1 PHYHIPL chr10:60936719 5'GT 60936719 Upstream 17bp
chr3 111795757 111795757 1 + G T THCA 111795754 + 111795734 111795774 41 CCACACCATGGACTGCACACCTCGGGATGTATGTTCAGGGG CCACACCATGGACTGCACACCTCTGGATGTATGTTCAGGGG < 41bp 0.783208561039653 0.39910246040684 0.18288472 0.057095557 prediction 0.566417122079306 Functional Loss - TMPRSS7 ENSG00000176040 CDS Human protein_coding chr3:111795754 chr3:111795757 nonsynonymous SNV 0.943 4 24 hm5C_associated_SNPs_57364 0 0 0 0 1 TMPRSS7 chr3:111795723 3'AG 111795723 Downstream 35bp
chr4 88901584 88901584 1 + G T UCEC 88901581 + 88901561 88901601 41 AAGAAACCAATGACTTTAAACAAGAGGTAAGTTCTCATTTT AAGAAACCAATGACTTTAAACAATAGGTAAGTTCTCATTTT < 41bp 0.783202559828647 0.421941377227039 0.49757227 0.066961944 prediction 0.566405119657293 Functional Loss - SPP1 ENSG00000118785 CDS Human protein_coding chr4:88901581 chr4:88901584 stopgain 0.952 0 24 hm5C_associated_SNPs_57366 0 0 0 0 2 SPP1 chr4:88901545 3'AG 88901545 Downstream 40bp
chr4 88901584 88901584 1 + G T UCEC 88901581 + 88901561 88901601 41 AAGAAACCAATGACTTTAAACAAGAGGTAAGTTCTCATTTT AAGAAACCAATGACTTTAAACAATAGGTAAGTTCTCATTTT < 41bp 0.783202559828647 0.421941377227039 0.49757227 0.066961944 prediction 0.566405119657293 Functional Loss - SPP1 ENSG00000118785 CDS Human protein_coding chr4:88901581 chr4:88901584 stopgain 0.952 0 24 hm5C_associated_SNPs_57366 0 0 0 0 2 SPP1 chr4:88901586 5'GT 88901586 Upstream 3bp
chr12 56629383 56629383 1 + G T LGG 56629381 + 56629361 56629401 41 CGCAGGACCTGGCGGACTACCAGAGAAGGACCTGGGCCCGG CGCAGGACCTGGCGGACTACCATAGAAGGACCTGGGCCCGG < 41bp 0.874126548057738 0.590930817123941 0.8919127 0.4401911 prediction 0.566391461867594 Functional Loss - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56629381 chr12:56629383 stopgain 0.908 0 23 hm5C_associated_SNPs_57367 0 0 1 0 1 SLC39A5 chr12:56629344 3'AG 56629344 Downstream 40bp
chr19 17873608 17873608 1 + G T SARC 17873606 + 17873586 17873626 41 GGCTTTGAGGTCCTGTACCACAGCGTGAAGCAGGGGCCCAT GGCTTTGAGGTCCTGTACCACATCGTGAAGCAGGGGCCCAT < 41bp 0.783187593106558 0.449865139638989 0.40235037 0.037634373 prediction 0.566375186213116 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17873606 chr19:17873608 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_57368 0 0 1 0 2 FCHO1 chr19:17873571 3'AG 17873571 Downstream 38bp
chr19 17873608 17873608 1 + G T SARC 17873606 + 17873586 17873626 41 GGCTTTGAGGTCCTGTACCACAGCGTGAAGCAGGGGCCCAT GGCTTTGAGGTCCTGTACCACATCGTGAAGCAGGGGCCCAT < 41bp 0.783187593106558 0.449865139638989 0.40235037 0.037634373 prediction 0.566375186213116 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17873606 chr19:17873608 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_57368 0 0 1 0 2 FCHO1 chr19:17873662 5'GT 17873662 Upstream 55bp
chr3 129233292 129233292 1 + G T LUAD 129233290 + 129233270 129233310 41 TCGGTGCCTACAGGCTGGCCCGGCACGCCTATGACAAGCTG TCGGTGCCTACAGGCTGGCCCGTCACGCCTATGACAAGCTG < 41bp 0.783169166134608 0.478410844538747 0.16395098 0.12582856 prediction 0.566338332269216 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129233290 chr3:129233292 synonymous SNV . 0 23 hm5C_associated_SNPs_57370 0 0 0 0 1 IFT122 chr3:129233232 3'AG 129233232 Downstream 61bp
chr8 67040565 67040565 1 + A C COAD 67040561 + 67040541 67040581 41 CTCTAACCCGTATTTGCCCACAAGAGGAGGTACCACCATGG CTCTAACCCGTATTTGCCCACAAGCGGAGGTACCACCATGG < 41bp 0.783146486702696 0.394349608506205 0.90337574 0.3874778 prediction 0.566292973405393 Functional Loss - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67040561 chr8:67040565 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_57375 0 0 0 0 1 TRIM55 chr8:67040539 3'AG 67040539 Downstream 27bp
chr11 60638758 60638758 1 + G T UCEC 60638756 + 60638736 60638776 41 TCCACATCCAAAAGGGGCCACAGGGTTCCATCACGCGGGAC TCCACATCCAAAAGGGGCCACATGGTTCCATCACGCGGGAC < 41bp 0.783144125208339 0.426944103074102 0.43755293 0.087623805 prediction 0.566288250416679 Functional Loss - ZP1 ENSG00000149506 CDS Human protein_coding chr11:60638756 chr11:60638758 nonsynonymous SNV 0.874 1 23 hm5C_associated_SNPs_57376 0 0 0 0 2 ZP1 chr11:60638690 3'AG 60638690 Downstream 69bp
chr11 60638758 60638758 1 + G T UCEC 60638756 + 60638736 60638776 41 TCCACATCCAAAAGGGGCCACAGGGTTCCATCACGCGGGAC TCCACATCCAAAAGGGGCCACATGGTTCCATCACGCGGGAC < 41bp 0.783144125208339 0.426944103074102 0.43755293 0.087623805 prediction 0.566288250416679 Functional Loss - ZP1 ENSG00000149506 CDS Human protein_coding chr11:60638756 chr11:60638758 nonsynonymous SNV 0.874 1 23 hm5C_associated_SNPs_57376 0 0 0 0 2 ZP1 chr11:60638787 5'GT 60638787 Upstream 30bp
chr1 155150650 155150650 1 + G T ESCA 155150647 + 155150627 155150667 41 CCGGAGCCTGCTGGATGGCTCAGGTCTGGTGGGCTATGCCC CCGGAGCCTGCTGGATGGCTCAGTTCTGGTGGGCTATGCCC < 41bp 0.78314288836162 0.406536619911303 0.58579147 0.2251992 prediction 0.566285776723241 Functional Loss - TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155150647 chr1:155150650 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_57377 0 0 0 0 1 TRIM46 chr1:155150731 5'GT 155150731 Upstream 82bp
chr10 71681683 71681683 1 + G T UCEC 71681680 + 71681660 71681700 41 CCCCTGGGCTTCCTGGCCTCCTGGGGCAGAAGGTAGGTGTT CCCCTGGGCTTCCTGGCCTCCTGTGGCAGAAGGTAGGTGTT < 41bp 0.783140583569831 0.416717309719987 0.8414012 0.340279 prediction 0.566281167139662 Functional Loss - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71681680 chr10:71681683 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_57378 0 0 0 0 1 COL13A1 chr10:71681691 5'GT 71681691 Upstream 9bp
chr17 61893018 61893018 1 + G T rs115503884 61893016 + 61892996 61893036 41 GCTACAGGGAGCGGCCTGGCCTGGGCTCTGAGAACATGGTG GCTACAGGGAGCGGCCTGGCCTTGGCTCTGAGAACATGGTG < 41bp 0.860671596965689 0.577531548556316 0.4059438 0.17238438 prediction 0.566280096818745 Functional Loss - DDX42 ENSG00000198231 CDS Human protein_coding chr17:61893016 chr17:61893018 synonymous SNV . 0 23 hm5C_associated_SNPs_57379 0 0 1 0 2 DDX42 chr17:61892923 3'AG 61892923 Downstream 96bp
chr17 61893018 61893018 1 + G T rs115503884 61893016 + 61892996 61893036 41 GCTACAGGGAGCGGCCTGGCCTGGGCTCTGAGAACATGGTG GCTACAGGGAGCGGCCTGGCCTTGGCTCTGAGAACATGGTG < 41bp 0.860671596965689 0.577531548556316 0.4059438 0.17238438 prediction 0.566280096818745 Functional Loss - DDX42 ENSG00000198231 CDS Human protein_coding chr17:61893016 chr17:61893018 synonymous SNV . 0 23 hm5C_associated_SNPs_57379 0 0 1 0 2 DDX42 chr17:61893033 5'GT 61893033 Upstream 16bp
chr22 17083060 17083060 1 + G T LUSC 17083057 + 17083037 17083077 41 CAGCCGCAGACAAAAGACCTCGGGGCCGGCCTCGCAAGGCG CAGCCGCAGACAAAAGACCTCGGTGCCGGCCTCGCAAGGCG < 41bp 0.871501660995901 0.588385712578802 0.90237904 0.64695585 prediction 0.566231896834199 Functional Loss - TPTEP1 ENSG00000100181 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:17083057 chr22:17083060 . . 0 24 hm5C_associated_SNPs_57382 0 0 1 0 1 TPTEP1 chr22:17083105 5'GT 17083105 Upstream 46bp
chr1 26584111 26584111 1 + C T LUSC 26584109 + 26584089 26584129 41 TTCAGAATGGAGCCATCTGCCACCATCCTGCTGCTTTTGGT TTCAGAATGGAGCCATCTGCCATCATCCTGCTGCTTTTGGT < 41bp 0.783113575187114 0.498790128056798 0.12264919 0.10903263 prediction 0.566227150374229 Functional Loss - CEP85 ENSG00000130695 CDS Human protein_coding chr1:26584109 chr1:26584111 synonymous SNV . 0 23 hm5C_associated_SNPs_57383 0 0 1 0 1 CEP85 chr1:26584088 3'AG 26584088 Downstream 24bp
chr2 242812052 242812052 1 + G T COAD 242812050 + 242812030 242812070 41 GCGGTGGTGTCCAGTACCTGCTGGTGGGGCTCTCGAGGTGC GCGGTGGTGTCCAGTACCTGCTTGTGGGGCTCTCGAGGTGC < 41bp 0.783099196232943 0.467000213249537 0.26623544 0.07528308 prediction 0.566198392465886 Functional Loss - RTP5 ENSG00000188011 CDS Human protein_coding chr2:242812050 chr2:242812052 synonymous SNV . 0 23 hm5C_associated_SNPs_57386 0 0 0 0 1 RTP5 chr2:242812066 5'GT 242812066 Upstream 15bp
chr8 69020524 69020524 1 + A T LUSC 69020520 + 69020500 69020540 41 TTTGGTGTTCAGTTGGATAGCAGGAAGCATAATTCTCATGA TTTGGTGTTCAGTTGGATAGCAGGTAGCATAATTCTCATGA < 41bp 0.783092234308121 0.483304164532433 0.26946962 0.07827577 prediction 0.566184468616242 Functional Loss - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69020520 chr8:69020524 stopgain 1.000 0 25 hm5C_associated_SNPs_57387 0 0 0 0 1 PREX2 chr8:69020566 5'GT 69020566 Upstream 43bp
chr18 56348543 56348543 1 + A C UCEC 56348539 + 56348519 56348559 41 CCTGCAGGCTATGGAACACACTGAAGTTCTTCAGCTTCTCA CCTGCAGGCTATGGAACACACTGACGTTCTTCAGCTTCTCA < 41bp 0.783088673343697 0.370365790108294 0.34274405 0.1490399 prediction 0.566177346687394 Functional Loss - MALT1 ENSG00000172175 CDS Human protein_coding chr18:56348539 chr18:56348543 nonsynonymous SNV 0.978 0 25 hm5C_associated_SNPs_57388 0 0 0 0 1 MALT1 chr18:56348568 5'GT 56348568 Upstream 26bp
chrX 100511180 100511180 1 + C T UCEC 100511178 + 100511158 100511198 41 GCCAGCCTTTGGACAGCAGGCTCCATGCAGTGTGGCCACAG GCCAGCCTTTGGACAGCAGGCTTCATGCAGTGTGGCCACAG < 41bp 0.78366867082247 0.500587012745697 0.44471416 0.099858135 prediction 0.566163316153545 Functional Loss - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100511178 chrX:100511180 nonsynonymous SNV 0.990 2 23 hm5C_associated_SNPs_57389 0 0 0 0 2 DRP2 chrX:100511107 3'AG 100511107 Downstream 74bp
chrX 100511180 100511180 1 + C T UCEC 100511178 + 100511158 100511198 41 GCCAGCCTTTGGACAGCAGGCTCCATGCAGTGTGGCCACAG GCCAGCCTTTGGACAGCAGGCTTCATGCAGTGTGGCCACAG < 41bp 0.78366867082247 0.500587012745697 0.44471416 0.099858135 prediction 0.566163316153545 Functional Loss - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100511178 chrX:100511180 nonsynonymous SNV 0.990 2 23 hm5C_associated_SNPs_57389 0 0 0 0 2 DRP2 chrX:100511250 5'GT 100511250 Upstream 71bp
chr11 7669672 7669672 1 + G T SARC 7669670 + 7669650 7669690 41 CAGAGCGTGTGTGTGCATGGCTGGAGGACTTTGGCCTGGCT CAGAGCGTGTGTGTGCATGGCTTGAGGACTTTGGCCTGGCT < 41bp 0.78307688667442 0.459955141115469 0.44002283 0.16870156 prediction 0.566153773348839 Functional Loss - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7669670 chr11:7669672 synonymous SNV . 0 23 hm5C_associated_SNPs_57391 0 0 1 0 2 PPFIBP2 chr11:7669618 3'AG 7669618 Downstream 55bp
chr11 7669672 7669672 1 + G T SARC 7669670 + 7669650 7669690 41 CAGAGCGTGTGTGTGCATGGCTGGAGGACTTTGGCCTGGCT CAGAGCGTGTGTGTGCATGGCTTGAGGACTTTGGCCTGGCT < 41bp 0.78307688667442 0.459955141115469 0.44002283 0.16870156 prediction 0.566153773348839 Functional Loss - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7669670 chr11:7669672 synonymous SNV . 0 23 hm5C_associated_SNPs_57391 0 0 1 0 2 PPFIBP2 chr11:7669768 5'GT 7669768 Upstream 97bp
chr4 155665926 155665926 1 + G T LUAD 155665923 + 155665903 155665943 41 CGCGGAGGGCTGAAAAGCTGCTGGGCTTTACCCCCTACAGC CGCGGAGGGCTGAAAAGCTGCTGTGCTTTACCCCCTACAGC < 41bp 0.783058343375771 0.399727673382918 0.27795893 0.09339967 prediction 0.566116686751542 Functional Loss - LRAT ENSG00000121207 CDS Human protein_coding chr4:155665923 chr4:155665926 nonsynonymous SNV 0.014 4 24 hm5C_associated_SNPs_57393 0 0 0 0 1 LRAT chr4:155666018 5'GT 155666018 Upstream 93bp
chr1 93594941 93594941 1 + G T LUSC 93594939 + 93594919 93594959 41 TTTCAAAGCAGAGAAAGAACCTGAAGGAACATCTCATGAAT TTTCAAAGCAGAGAAAGAACCTTAAGGAACATCTCATGAAT < 41bp 0.818738264951066 0.53568453772751 0.14701286 0.089206845 prediction 0.566107454447113 Functional Loss - MTF2 ENSG00000143033 CDS Human protein_coding chr1:93594939 chr1:93594941 stopgain 1.000 1 23 hm5C_associated_SNPs_57394 0 0 1 0 1 MTF2 chr1:93595005 5'GT 93595005 Upstream 65bp
chr4 128577843 128577843 1 + G T LUAD 128577840 + 128577820 128577860 41 GATGTTACTACTGAAAACATCGAGAGAGTTCTGTCTTGCAT GATGTTACTACTGAAAACATCGATAGAGTTCTGTCTTGCAT < 41bp 0.783039228753938 0.415401753090552 0.86674666 0.1974932 prediction 0.566078457507877 Functional Loss - INTU ENSG00000164066 CDS Human protein_coding chr4:128577840 chr4:128577843 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_57396 0 0 0 0 2 INTU chr4:128577791 3'AG 128577791 Downstream 53bp
chr4 128577843 128577843 1 + G T LUAD 128577840 + 128577820 128577860 41 GATGTTACTACTGAAAACATCGAGAGAGTTCTGTCTTGCAT GATGTTACTACTGAAAACATCGATAGAGTTCTGTCTTGCAT < 41bp 0.783039228753938 0.415401753090552 0.86674666 0.1974932 prediction 0.566078457507877 Functional Loss - INTU ENSG00000164066 CDS Human protein_coding chr4:128577840 chr4:128577843 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_57396 0 0 0 0 2 INTU chr4:128577876 5'GT 128577876 Upstream 34bp
chr19 4930801 4930801 1 + G T LUAD 4930798 + 4930778 4930818 41 GGCGCAGGTGGTCAGGGTGACGCGGAAGGCCCCCTCCCGGG GGCGCAGGTGGTCAGGGTGACGCTGAAGGCCCCCTCCCGGG < 41bp 0.900712091421367 0.617679227240562 0.9500668 0.8786433 prediction 0.56606572836161 Functional Loss - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4930798 chr19:4930801 . 0.002 0 24 hm5C_associated_SNPs_57397 0 0 1 0 2 UHRF1 chr19:4930728 3'AG 4930728 Downstream 74bp
chr19 4930801 4930801 1 + G T LUAD 4930798 + 4930778 4930818 41 GGCGCAGGTGGTCAGGGTGACGCGGAAGGCCCCCTCCCGGG GGCGCAGGTGGTCAGGGTGACGCTGAAGGCCCCCTCCCGGG < 41bp 0.900712091421367 0.617679227240562 0.9500668 0.8786433 prediction 0.56606572836161 Functional Loss - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4930798 chr19:4930801 . 0.002 0 24 hm5C_associated_SNPs_57397 0 0 1 0 2 UHRF1 chr19:4930888 5'GT 4930888 Upstream 88bp
chr19 6744953 6744953 1 + G C LUSC 6744952 + 6744932 6744972 41 CGGATGGACGGCCTGAACTCCGAGGCCCGGGTCGCAGCCGC CGGATGGACGGCCTGAACTCCCAGGCCCGGGTCGCAGCCGC < 41bp 0.783027628361017 0.478500530891197 0.914397 0.8772505 prediction 0.566055256722035 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6744952 chr19:6744953 nonsynonymous SNV 0.310 3 22 hm5C_associated_SNPs_57398 0 0 1 0 1 TRIP10 chr19:6745005 5'GT 6745005 Upstream 53bp
chr6 134785919 134785919 1 + G T SARC 134785917 + 134785897 134785937 41 ACACGCCTCACACTGTGACACAGCGGGAGAGCCCAGAGCGA ACACGCCTCACACTGTGACACATCGGGAGAGCCCAGAGCGA < 41bp 0.78300616407437 0.452463391879508 0.21847248 0.10364428 prediction 0.56601232814874 Functional Loss - LINC01010 ENSG00000236700 ncRNA_exonic Human lincRNA chr6:134785917 chr6:134785919 . . 0 23 hm5C_associated_SNPs_57400 0 0 0 0 1 LINC01010 chr6:134785987 5'GT 134785987 Upstream 69bp
chr11 102196242 102196242 1 + G T UCEC 102196240 + 102196220 102196260 41 TTTTGCTGTGATGGTGGACTCAGGTGTTGGGAATCTGGAGA TTTTGCTGTGATGGTGGACTCATGTGTTGGGAATCTGGAGA < 41bp 0.783003180709051 0.452985851420835 0.87450814 0.2601984 prediction 0.566006361418101 Functional Loss - BIRC3 ENSG00000023445 CDS Human protein_coding chr11:102196240 chr11:102196242 nonsynonymous SNV 0.975 4 23 hm5C_associated_SNPs_57402 0 0 0 0 2 BIRC3 chr11:102196197 3'AG 102196197 Downstream 46bp
chr11 102196242 102196242 1 + G T UCEC 102196240 + 102196220 102196260 41 TTTTGCTGTGATGGTGGACTCAGGTGTTGGGAATCTGGAGA TTTTGCTGTGATGGTGGACTCATGTGTTGGGAATCTGGAGA < 41bp 0.783003180709051 0.452985851420835 0.87450814 0.2601984 prediction 0.566006361418101 Functional Loss - BIRC3 ENSG00000023445 CDS Human protein_coding chr11:102196240 chr11:102196242 nonsynonymous SNV 0.975 4 23 hm5C_associated_SNPs_57402 0 0 0 0 2 BIRC3 chr11:102196296 5'GT 102196296 Upstream 55bp
chr11 74545772 74545772 1 + G T PAAD 74545770 + 74545750 74545790 41 AGAGCTGTAGTGACACAGCCCAGGAAAGAGCGAAGAGCAGA AGAGCTGTAGTGACACAGCCCATGAAAGAGCGAAGAGCAGA < 41bp 0.782990710217166 0.454160554260095 0.10940176 0.018292755 prediction 0.565981420434332 Functional Loss - RNF169 ENSG00000166439 CDS Human protein_coding chr11:74545770 chr11:74545772 nonsynonymous SNV 0.852 3 23 hm5C_associated_SNPs_57403 0 0 1 0 2 RNF169 chr11:74545721 3'AG 74545721 Downstream 52bp
chr11 74545772 74545772 1 + G T PAAD 74545770 + 74545750 74545790 41 AGAGCTGTAGTGACACAGCCCAGGAAAGAGCGAAGAGCAGA AGAGCTGTAGTGACACAGCCCATGAAAGAGCGAAGAGCAGA < 41bp 0.782990710217166 0.454160554260095 0.10940176 0.018292755 prediction 0.565981420434332 Functional Loss - RNF169 ENSG00000166439 CDS Human protein_coding chr11:74545770 chr11:74545772 nonsynonymous SNV 0.852 3 23 hm5C_associated_SNPs_57403 0 0 1 0 2 RNF169 chr11:74545820 5'GT 74545820 Upstream 49bp
chr20 57782025 57782025 1 + G T LUSC 57782023 + 57782003 57782043 41 AGTAGACTTCGCACACCAACCTGGGTGCGAAGAAGAAGCCG AGTAGACTTCGCACACCAACCTTGGTGCGAAGAAGAAGCCG < 41bp 0.782981414152034 0.447488154473522 0.7130799 0.26904255 prediction 0.565962828304068 Functional Loss - ZNF831 ENSG00000124203 CDS Human protein_coding chr20:57782023 chr20:57782025 nonsynonymous SNV 0.003 2 23 hm5C_associated_SNPs_57404 0 0 0 0 2 ZNF831 chr20:57781960 3'AG 57781960 Downstream 66bp
chr20 57782025 57782025 1 + G T LUSC 57782023 + 57782003 57782043 41 AGTAGACTTCGCACACCAACCTGGGTGCGAAGAAGAAGCCG AGTAGACTTCGCACACCAACCTTGGTGCGAAGAAGAAGCCG < 41bp 0.782981414152034 0.447488154473522 0.7130799 0.26904255 prediction 0.565962828304068 Functional Loss - ZNF831 ENSG00000124203 CDS Human protein_coding chr20:57782023 chr20:57782025 nonsynonymous SNV 0.003 2 23 hm5C_associated_SNPs_57404 0 0 0 0 2 ZNF831 chr20:57782111 5'GT 57782111 Upstream 87bp
chrX 41554951 41554951 1 + G T UCEC 41554949 + 41554929 41554969 41 AGCTGGCCTTACTCCTCCCACAGAATGCGCTTTATAACCAA AGCTGGCCTTACTCCTCCCACATAATGCGCTTTATAACCAA < 41bp 0.827507454984014 0.54453358261976 0.20983109 0.033627868 prediction 0.565947744728508 Functional Loss - GPR34 ENSG00000171659 CDS Human protein_coding chrX:41554949 chrX:41554951 nonsynonymous SNV 0.048 0 23 hm5C_associated_SNPs_57405 0 0 0 0 1 GPR34 chrX:41554881 3'AG 41554881 Downstream 71bp
chr19 12858032 12858032 1 + G T SARC 12858029 + 12858009 12858049 41 AGATGTGCAACATGCTGGGCCTGGGGGACATGAACGCAGAC AGATGTGCAACATGCTGGGCCTGTGGGACATGAACGCAGAC < 41bp 0.782957636428153 0.38759405846395 0.22558048 0.030889988 prediction 0.565915272856307 Functional Loss - ASNA1 ENSG00000198356 CDS Human protein_coding chr19:12858029 chr19:12858032 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_57407 0 0 1 0 2 ASNA1 chr19:12858011 3'AG 12858011 Downstream 22bp
chr19 12858032 12858032 1 + G T SARC 12858029 + 12858009 12858049 41 AGATGTGCAACATGCTGGGCCTGGGGGACATGAACGCAGAC AGATGTGCAACATGCTGGGCCTGTGGGACATGAACGCAGAC < 41bp 0.782957636428153 0.38759405846395 0.22558048 0.030889988 prediction 0.565915272856307 Functional Loss - ASNA1 ENSG00000198356 CDS Human protein_coding chr19:12858029 chr19:12858032 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_57407 0 0 1 0 2 ASNA1 chr19:12858118 5'GT 12858118 Upstream 87bp
chr6 80816585 80816585 1 + G T LUSC 80816582 + 80816562 80816602 41 TGGCTCATTTTACTTTCCAGCCAGATCCGGAGCCCCGGGAG TGGCTCATTTTACTTTCCAGCCATATCCGGAGCCCCGGGAG < 41bp 0.782957265955848 0.420303450982106 0.38566124 0.22978154 prediction 0.565914531911695 Functional Loss - BCKDHB ENSG00000083123 CDS Human protein_coding chr6:80816582 chr6:80816585 nonsynonymous SNV 0.080 2 24 hm5C_associated_SNPs_57408 0 0 1 0 1 BCKDHB chr6:80816606 5'GT 80816606 Upstream 22bp
chr2 27373233 27373233 1 + G T LUSC 27373230 + 27373210 27373250 41 CTCCGCTACTTGCACCCTCTCAAGGTAAGTCACAAGCCCTG CTCCGCTACTTGCACCCTCTCAATGTAAGTCACAAGCCCTG < 41bp 0.782937260706138 0.396400399536662 0.920691 0.13926128 prediction 0.565874521412276 Functional Loss - TCF23 ENSG00000163792 CDS Human protein_coding chr2:27373230 chr2:27373233 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_57411 0 0 0 0 1 TCF23 chr2:27373233 5'GT 27373233 Upstream 1bp
chr19 51647721 51647721 1 + G T UCEC 51647719 + 51647699 51647739 41 CCCTGGAGTCTGGCTGCTTCCAGAATCTGACCTGCTCTGTG CCCTGGAGTCTGGCTGCTTCCATAATCTGACCTGCTCTGTG < 41bp 0.86577371739218 0.582837691690345 0.92369 0.82579386 prediction 0.56587205140367 Functional Loss - SIGLEC7 ENSG00000168995 CDS Human protein_coding chr19:51647719 chr19:51647721 nonsynonymous SNV 0.037 0 23 hm5C_associated_SNPs_57412 0 0 0 0 1 SIGLEC7 chr19:51647663 3'AG 51647663 Downstream 59bp
chr12 133196160 133196160 1 + G T CESC 133196157 + 133196137 133196177 41 GAGGAGTACGTGAAGCCCCCCGAGGTGCGGGCCGCCCCCTG GAGGAGTACGTGAAGCCCCCCGATGTGCGGGCCGCCCCCTG < 41bp 0.889052079029831 0.60615478974575 0.7854441 0.3019519 prediction 0.565794578568162 Functional Loss - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133196157 chr12:133196160 nonsynonymous SNV 0.645 4 24 hm5C_associated_SNPs_57419 0 0 0 0 1 P2RX2 chr12:133196160 5'GT 133196160 Upstream 1bp
chr1 22927285 22927285 1 + G T UCEC 22927282 + 22927262 22927302 41 GCCTATGGGGAGCGGCCCTACTGGAACATGACCAACCGGGA GCCTATGGGGAGCGGCCCTACTGTAACATGACCAACCGGGA < 41bp 0.890606635497899 0.60773381406728 0.29125917 0.07109842 prediction 0.565745642861238 Functional Loss - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22927282 chr1:22927285 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_57422 0 0 0 0 1 EPHA8 chr1:22927303 5'GT 22927303 Upstream 19bp
chr5 76332393 76332393 1 + G T UCEC 76332391 + 76332371 76332411 41 TCTTTTATAGGAGCCAGCATCTGCATTAGCAACAGAAGATA TCTTTTATAGGAGCCAGCATCTTCATTAGCAACAGAAGATA < 41bp 0.819133196852632 0.536261764408355 0.14037186 0.10760209 prediction 0.565742864888553 Functional Loss - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76332391 chr5:76332393 nonsynonymous SNV 0.052 0 23 hm5C_associated_SNPs_57423 0 0 0 0 1 AGGF1 chr5:76332381 3'AG 76332381 Downstream 13bp
chr19 11101907 11101907 1 + A C LIHC 11101903 + 11101883 11101923 41 AATGCTAAGGCCTACAAGCGCAGCAAGCGCCAGTCCCTGCG AATGCTAAGGCCTACAAGCGCAGCCAGCGCCAGTCCCTGCG < 41bp 0.782857414664292 0.392868517574377 0.8532971 0.78673756 prediction 0.565714829328584 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11101903 chr19:11101907 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_57425 0 0 1 0 2 SMARCA4 chr19:11101826 3'AG 11101826 Downstream 82bp
chr19 11101907 11101907 1 + A C LIHC 11101903 + 11101883 11101923 41 AATGCTAAGGCCTACAAGCGCAGCAAGCGCCAGTCCCTGCG AATGCTAAGGCCTACAAGCGCAGCCAGCGCCAGTCCCTGCG < 41bp 0.782857414664292 0.392868517574377 0.8532971 0.78673756 prediction 0.565714829328584 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11101903 chr19:11101907 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_57425 0 0 1 0 2 SMARCA4 chr19:11101999 5'GT 11101999 Upstream 93bp
chr6 36270156 36270156 1 + G T LUSC 36270154 + 36270134 36270174 41 GCCATCCCTGGGGCCTTCAACTGTGGGGGCACCTCAAACAC GCCATCCCTGGGGCCTTCAACTTTGGGGGCACCTCAAACAC < 41bp 0.782813394099352 0.447955575272834 0.53926456 0.27567947 prediction 0.565626788198705 Functional Loss - PNPLA1 ENSG00000180316 CDS Human protein_coding chr6:36270154 chr6:36270156 nonsynonymous SNV 0.004 1 23 hm5C_associated_SNPs_57428 0 0 0 0 1 PNPLA1 chr6:36270246 5'GT 36270246 Upstream 91bp
chr19 17393504 17393504 1 + G C rs1864113 17393503 + 17393483 17393523 41 GCCGCTGCATGTGGCCGCCGCGTGGGGCTGCCGCCGCGGCC GCCGCTGCATGTGGCCGCCGCCTGGGGCTGCCGCCGCGGCC < 41bp 0.782812702675856 0.474026800553281 0.8792811 0.8605262 prediction 0.565625405351712 Functional Loss - ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17393503 chr19:17393504 synonymous SNV . 0 22 hm5C_associated_SNPs_57429 0 0 1 0 2 ANKLE1 chr19:17393465 3'AG 17393465 Downstream 40bp
chr19 17393504 17393504 1 + G C rs1864113 17393503 + 17393483 17393523 41 GCCGCTGCATGTGGCCGCCGCGTGGGGCTGCCGCCGCGGCC GCCGCTGCATGTGGCCGCCGCCTGGGGCTGCCGCCGCGGCC < 41bp 0.782812702675856 0.474026800553281 0.8792811 0.8605262 prediction 0.565625405351712 Functional Loss - ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17393503 chr19:17393504 synonymous SNV . 0 22 hm5C_associated_SNPs_57429 0 0 1 0 2 ANKLE1 chr19:17393570 5'GT 17393570 Upstream 67bp
chr3 119087273 119087273 1 + G T LUAD 119087271 + 119087251 119087291 41 TGACAAGGGAAGTGTACCTCCAGGACATCCACTGTGTGGGC TGACAAGGGAAGTGTACCTCCATGACATCCACTGTGTGGGC < 41bp 0.782803997971251 0.447360279440281 0.43543845 0.11840561 prediction 0.565607995942502 Functional Loss - ARHGAP31 ENSG00000031081 CDS Human protein_coding chr3:119087271 chr3:119087273 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_57431 0 0 0 0 2 ARHGAP31 chr3:119087219 3'AG 119087219 Downstream 55bp
chr3 119087273 119087273 1 + G T LUAD 119087271 + 119087251 119087291 41 TGACAAGGGAAGTGTACCTCCAGGACATCCACTGTGTGGGC TGACAAGGGAAGTGTACCTCCATGACATCCACTGTGTGGGC < 41bp 0.782803997971251 0.447360279440281 0.43543845 0.11840561 prediction 0.565607995942502 Functional Loss - ARHGAP31 ENSG00000031081 CDS Human protein_coding chr3:119087271 chr3:119087273 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_57431 0 0 0 0 2 ARHGAP31 chr3:119087363 5'GT 119087363 Upstream 91bp
chr7 36450230 36450230 1 + C T ACC 36450228 + 36450208 36450248 41 CCACAGAACCCCCATTATTACTCCAAATACAAAGGCCATCC CCACAGAACCCCCATTATTACTTCAAATACAAAGGCCATCC < 41bp 0.801994733573482 0.519200512903662 0.9478712 0.12623766 prediction 0.56558844133964 Functional Loss - ANLN ENSG00000011426 CDS Human protein_coding chr7:36450228 chr7:36450230 nonsynonymous SNV 0.966 4 23 hm5C_associated_SNPs_57432 0 0 1 0 1 ANLN chr7:36450313 5'GT 36450313 Upstream 84bp
chr19 51380292 51380292 1 + G T CESC 51380289 + 51380269 51380309 41 GTCATCCCTACTCCCAACATCTGGAGGGGAAAGGTGAGTGA GTCATCCCTACTCCCAACATCTGTAGGGGAAAGGTGAGTGA < 41bp 0.782769791098404 0.4081197660037 0.8340218 0.5274339 prediction 0.565539582196808 Functional Loss - KLK2 ENSG00000167751 CDS Human protein_coding chr19:51380289 chr19:51380292 stopgain 0.001 0 24 hm5C_associated_SNPs_57435 0 0 0 0 1 KLK2 chr19:51380301 5'GT 51380301 Upstream 10bp
chr2 61333783 61333783 1 + G T LUAD 61333781 + 61333761 61333801 41 TACACCATGGGGTCCCAAAACTGGGGAGCTCAATGCTGTGA TACACCATGGGGTCCCAAAACTTGGGAGCTCAATGCTGTGA < 41bp 0.838310691105432 0.55554991658239 0.89479065 0.260163 prediction 0.565521549046083 Functional Loss - KIAA1841 ENSG00000162929 CDS Human protein_coding chr2:61333781 chr2:61333783 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_57438 0 0 0 0 2 KIAA1841 chr2:61333698 3'AG 61333698 Downstream 86bp
chr2 61333783 61333783 1 + G T LUAD 61333781 + 61333761 61333801 41 TACACCATGGGGTCCCAAAACTGGGGAGCTCAATGCTGTGA TACACCATGGGGTCCCAAAACTTGGGAGCTCAATGCTGTGA < 41bp 0.838310691105432 0.55554991658239 0.89479065 0.260163 prediction 0.565521549046083 Functional Loss - KIAA1841 ENSG00000162929 CDS Human protein_coding chr2:61333781 chr2:61333783 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_57438 0 0 0 0 2 KIAA1841 chr2:61333797 5'GT 61333797 Upstream 15bp
chr17 20483243 20483243 1 + G T PAAD 20483240 + 20483220 20483260 41 CCCTAGCTGGCCAGGCCACACCAGAGATCCCATCGGGGCTG CCCTAGCTGGCCAGGCCACACCATAGATCCCATCGGGGCTG < 41bp 0.894793804862367 0.6120760085844 0.80580235 0.26016423 prediction 0.565435592555933 Functional Loss - CDRT15L2 ENSG00000214819 CDS Human protein_coding chr17:20483240 chr17:20483243 stopgain 0.013 0 24 hm5C_associated_SNPs_57443 0 0 0 0 1 CDRT15L2 chr17:20483321 5'GT 20483321 Upstream 79bp
chr17 15644512 15644512 1 + G T UCEC 15644510 + 15644490 15644530 41 CTGCCAGAGGAAGATGCTTTCTGGGCGCTTACCCAGTTGCT CTGCCAGAGGAAGATGCTTTCTTGGCGCTTACCCAGTTGCT < 41bp 0.869120805682842 0.586404415529287 0.9161004 0.5426788 prediction 0.565432780307111 Functional Loss - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15644510 chr17:15644512 nonsynonymous SNV 0.020 0 23 hm5C_associated_SNPs_57444 0 0 0 0 2 TBC1D26 chr17:15644436 3'AG 15644436 Downstream 77bp
chr17 15644512 15644512 1 + G T UCEC 15644510 + 15644490 15644530 41 CTGCCAGAGGAAGATGCTTTCTGGGCGCTTACCCAGTTGCT CTGCCAGAGGAAGATGCTTTCTTGGCGCTTACCCAGTTGCT < 41bp 0.869120805682842 0.586404415529287 0.9161004 0.5426788 prediction 0.565432780307111 Functional Loss - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15644510 chr17:15644512 nonsynonymous SNV 0.020 0 23 hm5C_associated_SNPs_57444 0 0 0 0 2 TBC1D26 chr17:15644555 5'GT 15644555 Upstream 44bp
chr1 77333303 77333303 1 + G T SARC 77333301 + 77333281 77333321 41 TACCCATCATGGAAACCCTCCAGGAAAAAGTGGCCCCGGAC TACCCATCATGGAAACCCTCCATGAAAAAGTGGCCCCGGAC < 41bp 0.797908205032625 0.515248833862397 0.14603889 0.0070550144 prediction 0.565318742340456 Functional Loss - ST6GALNAC5 ENSG00000117069 UTR5 Human protein_coding chr1:77333301 chr1:77333303 . . 0 23 hm5C_associated_SNPs_57452 0 0 0 0 1 ST6GALNAC5 chr1:77333375 5'GT 77333375 Upstream 73bp
chr3 14693376 14693376 1 + G T STAD 14693373 + 14693353 14693393 41 AGGAAAAAGCCTTTGGACGTCACGGCCTCCTCGGTGAGTGA AGGAAAAAGCCTTTGGACGTCACTGCCTCCTCGGTGAGTGA < 41bp 0.782647375673947 0.403699090611737 0.3557545 0.33524406 prediction 0.565294751347894 Functional Loss - CCDC174 ENSG00000154781 CDS Human protein_coding chr3:14693373 chr3:14693376 synonymous SNV . 0 24 hm5C_associated_SNPs_57455 0 0 1 0 1 CCDC174 chr3:14693385 5'GT 14693385 Upstream 10bp
chr3 140997319 140997319 1 + G T UCEC 140997317 + 140997297 140997337 41 CTTTTGTACTGCAACATCCCCAGCGTGGCCGAGCGCAGCAT CTTTTGTACTGCAACATCCCCATCGTGGCCGAGCGCAGCAT < 41bp 0.859492199323338 0.576848065534682 0.5248686 0.077502996 prediction 0.565288267577311 Functional Loss - PXYLP1 ENSG00000155893 CDS Human protein_coding chr3:140997317 chr3:140997319 nonsynonymous SNV 0.947 1 23 hm5C_associated_SNPs_57456 0 0 0 0 1 PXYLP1 chr3:140997342 5'GT 140997342 Upstream 24bp
chr2 174230297 174230297 1 + G T UCEC 174230294 + 174230274 174230314 41 AGAACGTCTGCAGCAATTCTCGAGAGAAGATATATAACCGT AGAACGTCTGCAGCAATTCTCGATAGAAGATATATAACCGT < 41bp 0.89120297710624 0.608563011208738 0.92239743 0.70732534 prediction 0.565279931795004 Functional Loss - CDCA7 ENSG00000144354 CDS Human protein_coding chr2:174230294 chr2:174230297 stopgain 0.997 1 24 hm5C_associated_SNPs_57457 0 0 1 0 1 CDCA7 chr2:174230320 5'GT 174230320 Upstream 24bp
chr9 130492961 130492961 1 + G T UCEC 130492959 + 130492939 130492979 41 CTGAGATGTCGGCTATCTGCCAGGAATACAGGAGCACCTCA CTGAGATGTCGGCTATCTGCCATGAATACAGGAGCACCTCA < 41bp 0.852780962105815 0.570152617429288 0.8759066 0.081480116 prediction 0.565256689353054 Functional Loss - TTC16 ENSG00000167094 CDS Human protein_coding chr9:130492959 chr9:130492961 nonsynonymous SNV 0.007 2 23 hm5C_associated_SNPs_57458 0 0 0 0 1 TTC16 chr9:130492915 3'AG 130492915 Downstream 47bp
chr2 220402377 220402377 1 + G T rs148622543 220402375 + 220402355 220402395 41 TGTCCTGGGATCGACTGAAGCGGGTATGGAGGCGTCCCAAG TGTCCTGGGATCGACTGAAGCGTGTATGGAGGCGTCCCAAG < 41bp 0.863483147556602 0.580862337541724 0.9188851 0.4131769 prediction 0.565241620029757 Functional Loss - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220402375 chr2:220402377 synonymous SNV . 0 23 hm5C_associated_SNPs_57462 0 0 1 0 2 ASIC4 chr2:220402354 3'AG 220402354 Downstream 24bp
chr2 220402377 220402377 1 + G T rs148622543 220402375 + 220402355 220402395 41 TGTCCTGGGATCGACTGAAGCGGGTATGGAGGCGTCCCAAG TGTCCTGGGATCGACTGAAGCGTGTATGGAGGCGTCCCAAG < 41bp 0.863483147556602 0.580862337541724 0.9188851 0.4131769 prediction 0.565241620029757 Functional Loss - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220402375 chr2:220402377 synonymous SNV . 0 23 hm5C_associated_SNPs_57462 0 0 1 0 2 ASIC4 chr2:220402458 5'GT 220402458 Upstream 82bp
chr2 238434406 238434406 1 + G T LUSC 238434404 + 238434384 238434424 41 CCTGGCTGAGCTCTGCCCGCCTGGAGGCTCCCACAGGATGG CCTGGCTGAGCTCTGCCCGCCTTGAGGCTCCCACAGGATGG < 41bp 0.858416791498704 0.575834985628783 0.4940023 0.1867863 prediction 0.565163611739842 Functional Loss - MLPH ENSG00000115648 CDS Human protein_coding chr2:238434404 chr2:238434406 stopgain 0.016 0 23 hm5C_associated_SNPs_57465 0 0 0 0 1 MLPH chr2:238434448 5'GT 238434448 Upstream 43bp
chr4 56726620 56726620 1 + G T UCEC 56726617 + 56726597 56726637 41 CAGGTTAAGGTGGTCAAAGTCAAGAAATCCGATAAGGGAGA CAGGTTAAGGTGGTCAAAGTCAATAAATCCGATAAGGGAGA < 41bp 0.886011904254091 0.603431631216333 0.63925886 0.38465405 prediction 0.565160546075516 Functional Loss - EXOC1 ENSG00000090989 CDS Human protein_coding chr4:56726617 chr4:56726620 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_57466 0 0 0 0 2 EXOC1 chr4:56726577 3'AG 56726577 Downstream 44bp
chr4 56726620 56726620 1 + G T UCEC 56726617 + 56726597 56726637 41 CAGGTTAAGGTGGTCAAAGTCAAGAAATCCGATAAGGGAGA CAGGTTAAGGTGGTCAAAGTCAATAAATCCGATAAGGGAGA < 41bp 0.886011904254091 0.603431631216333 0.63925886 0.38465405 prediction 0.565160546075516 Functional Loss - EXOC1 ENSG00000090989 CDS Human protein_coding chr4:56726617 chr4:56726620 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_57466 0 0 0 0 2 EXOC1 chr4:56726707 5'GT 56726707 Upstream 88bp
chr2 3461428 3461428 1 + G C LUSC 3461427 + 3461407 3461447 41 GAGCAAGGCTTAGCAGAAGACGGCGGCATGAGCAGCGTGAC GAGCAAGGCTTAGCAGAAGACCGCGGCATGAGCAGCGTGAC < 41bp 0.801215570798528 0.518640146964192 0.7296893 0.31086433 prediction 0.565150847668673 Functional Loss - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3461427 chr2:3461428 nonsynonymous SNV 0.049 4 22 hm5C_associated_SNPs_57467 0 0 1 0 2 TRAPPC12 chr2:3461392 3'AG 3461392 Downstream 37bp
chr2 3461428 3461428 1 + G C LUSC 3461427 + 3461407 3461447 41 GAGCAAGGCTTAGCAGAAGACGGCGGCATGAGCAGCGTGAC GAGCAAGGCTTAGCAGAAGACCGCGGCATGAGCAGCGTGAC < 41bp 0.801215570798528 0.518640146964192 0.7296893 0.31086433 prediction 0.565150847668673 Functional Loss - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3461427 chr2:3461428 nonsynonymous SNV 0.049 4 22 hm5C_associated_SNPs_57467 0 0 1 0 2 TRAPPC12 chr2:3461464 5'GT 3461464 Upstream 37bp
chr19 10220892 10220892 1 + G T LUSC 10220890 + 10220870 10220910 41 TCGCTGGCCGTGGCAACATGCGGGCCCAGCAGAGTGCAGTG TCGCTGGCCGTGGCAACATGCGTGCCCAGCAGAGTGCAGTG < 41bp 0.782564525680599 0.430469237125736 0.9214189 0.32906207 prediction 0.565129051361199 Functional Loss - PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10220890 chr19:10220892 synonymous SNV . 0 23 hm5C_associated_SNPs_57471 0 0 1 0 2 PPAN;PPAN-P2RY11 chr19:10220799 3'AG 10220799 Downstream 94bp
chr19 10220892 10220892 1 + G T LUSC 10220890 + 10220870 10220910 41 TCGCTGGCCGTGGCAACATGCGGGCCCAGCAGAGTGCAGTG TCGCTGGCCGTGGCAACATGCGTGCCCAGCAGAGTGCAGTG < 41bp 0.782564525680599 0.430469237125736 0.9214189 0.32906207 prediction 0.565129051361199 Functional Loss - PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10220890 chr19:10220892 synonymous SNV . 0 23 hm5C_associated_SNPs_57471 0 0 1 0 2 PPAN;PPAN-P2RY11 chr19:10220922 5'GT 10220922 Upstream 31bp
chr16 70500067 70500067 1 + G T LUAD 70500064 + 70500044 70500084 41 TTCCCCTTTGATGACTGTGGCAGGGCTTTCACCTGCCTCCC TTCCCCTTTGATGACTGTGGCAGTGCTTTCACCTGCCTCCC < 41bp 0.782551777424187 0.384658879566589 0.9347023 0.77892065 prediction 0.565103554848375 Functional Loss - FUK ENSG00000157353 CDS Human protein_coding chr16:70500064 chr16:70500067 nonsynonymous SNV 0.988 3 24 hm5C_associated_SNPs_57472 0 0 1 0 1 FUK chr16:70500160 5'GT 70500160 Upstream 94bp
chr17 18654366 18654366 1 + G C OV 18654362 + 18654342 18654382 41 TCCGAAGTGGAAGCTGAGAACGAAGGTGGGTTCCAACAGCA TCCGAAGTGGAAGCTGAGAACGAACGTGGGTTCCAACAGCA < 41bp 0.793403115373794 0.510871671941195 0.849206 0.41519627 prediction 0.565062886865199 Functional Loss - FBXW10 ENSG00000171931 CDS Human protein_coding chr17:18654362 chr17:18654366 nonsynonymous SNV 0.594 3 25 hm5C_associated_SNPs_57474 0 0 0 0 1 FBXW10 chr17:18654366 5'GT 18654366 Upstream 1bp
chr11 121036051 121036051 1 + G T GBM 121036049 + 121036029 121036069 41 ACTTGCGAGCTGGGCAATGGCAGGGAGCTGTGTGGCTGCAT ACTTGCGAGCTGGGCAATGGCATGGAGCTGTGTGGCTGCAT < 41bp 0.782530462398651 0.483546470775994 0.9253752 0.36237037 prediction 0.565060924797301 Functional Loss - TECTA ENSG00000109927 CDS Human protein_coding chr11:121036049 chr11:121036051 nonsynonymous SNV 0.056 1 23 hm5C_associated_SNPs_57475 0 0 0 0 2 TECTA chr11:121035982 3'AG 121035982 Downstream 70bp
chr11 121036051 121036051 1 + G T GBM 121036049 + 121036029 121036069 41 ACTTGCGAGCTGGGCAATGGCAGGGAGCTGTGTGGCTGCAT ACTTGCGAGCTGGGCAATGGCATGGAGCTGTGTGGCTGCAT < 41bp 0.782530462398651 0.483546470775994 0.9253752 0.36237037 prediction 0.565060924797301 Functional Loss - TECTA ENSG00000109927 CDS Human protein_coding chr11:121036049 chr11:121036051 nonsynonymous SNV 0.056 1 23 hm5C_associated_SNPs_57475 0 0 0 0 2 TECTA chr11:121036092 5'GT 121036092 Upstream 42bp
chr9 131763856 131763856 1 + G C BLCA 131763855 + 131763835 131763875 41 AAGGAGCTGTGTGAGGTAGACGAGGATGGTGACTCCTGGCT AAGGAGCTGTGTGAGGTAGACCAGGATGGTGACTCCTGGCT < 41bp 0.782519820935552 0.479530467852344 0.8726995 0.72853166 prediction 0.565039641871103 Functional Loss - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131763855 chr9:131763856 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_57477 0 0 1 0 1 NUP188 chr9:131763808 3'AG 131763808 Downstream 49bp
chr21 33318380 33318380 1 + G T LUAD 33318377 + 33318357 33318397 41 TGAGCAACTGCGCAGGGATCCTGGGTTACTCGGATCCGTTC TGAGCAACTGCGCAGGGATCCTGTGTTACTCGGATCCGTTC < 41bp 0.782519715812821 0.394301088388605 0.8413223 0.0535731 prediction 0.565039431625642 Functional Loss - HUNK ENSG00000142149 CDS Human protein_coding chr21:33318377 chr21:33318380 nonsynonymous SNV 0.984 4 24 hm5C_associated_SNPs_57478 0 0 0 0 1 HUNK chr21:33318348 3'AG 33318348 Downstream 33bp
chr10 23290983 23290983 1 + G T LUAD 23290980 + 23290960 23291000 41 CGGCCAATGAATTATGCAGGCTCGGGTGAGTGGATGCCATC CGGCCAATGAATTATGCAGGCTCTGGTGAGTGGATGCCATC < 41bp 0.782492192648981 0.416074908431738 0.26272207 0.23773935 prediction 0.564984385297962 Functional Loss - ARMC3 ENSG00000165309 CDS Human protein_coding chr10:23290980 chr10:23290983 nonsynonymous SNV 0.897 4 24 hm5C_associated_SNPs_57481 0 0 0 0 1 ARMC3 chr10:23290984 5'GT 23290984 Upstream 2bp
chr2 95953996 95953996 1 + G T LUAD 95953993 + 95953973 95954013 41 TGCCACCTGCCAGCCCCTCTCCGGAGCCCTGGACAACAGCC TGCCACCTGCCAGCCCCTCTCCGTAGCCCTGGACAACAGCC < 41bp 0.782485846256721 0.387511695131092 0.92137915 0.43387243 prediction 0.564971692513442 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95953993 chr2:95953996 nonsynonymous SNV 0.088 0 24 hm5C_associated_SNPs_57482 0 0 0 0 2 PROM2 chr2:95953959 3'AG 95953959 Downstream 38bp
chr2 95953996 95953996 1 + G T LUAD 95953993 + 95953973 95954013 41 TGCCACCTGCCAGCCCCTCTCCGGAGCCCTGGACAACAGCC TGCCACCTGCCAGCCCCTCTCCGTAGCCCTGGACAACAGCC < 41bp 0.782485846256721 0.387511695131092 0.92137915 0.43387243 prediction 0.564971692513442 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95953993 chr2:95953996 nonsynonymous SNV 0.088 0 24 hm5C_associated_SNPs_57482 0 0 0 0 2 PROM2 chr2:95954048 5'GT 95954048 Upstream 53bp
chr10 26800746 26800746 1 + G C BLCA 26800745 + 26800725 26800765 41 TGGATGAGCGGCAGCTGGCCCGAGATGTTCTGGACAACCTT TGGATGAGCGGCAGCTGGCCCCAGATGTTCTGGACAACCTT < 41bp 0.78248458082564 0.479866457182652 0.4319895 0.41165966 prediction 0.56496916165128 Functional Loss - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26800745 chr10:26800746 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_57483 0 0 0 0 2 APBB1IP chr10:26800676 3'AG 26800676 Downstream 71bp
chr10 26800746 26800746 1 + G C BLCA 26800745 + 26800725 26800765 41 TGGATGAGCGGCAGCTGGCCCGAGATGTTCTGGACAACCTT TGGATGAGCGGCAGCTGGCCCCAGATGTTCTGGACAACCTT < 41bp 0.78248458082564 0.479866457182652 0.4319895 0.41165966 prediction 0.56496916165128 Functional Loss - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26800745 chr10:26800746 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_57483 0 0 0 0 2 APBB1IP chr10:26800835 5'GT 26800835 Upstream 90bp
chr19 55220465 55220465 1 + G T LUAD 55220463 + 55220443 55220483 41 GCCCCATGACCCTCTGGTGCCAGGGGACCCTGGATACCCAG GCCCCATGACCCTCTGGTGCCATGGGACCCTGGATACCCAG < 41bp 0.828896858995846 0.546414546965361 0.9450173 0.90085864 prediction 0.564964624060971 Functional Loss - LILRP2 ENSG00000170858 ncRNA_exonic Human transcribed_processed_pseudogene chr19:55220463 chr19:55220465 . . 0 23 hm5C_associated_SNPs_57484 0 0 0 0 1 LILRP2 chr19:55220386 3'AG 55220386 Downstream 80bp
chr3 23848829 23848829 1 + G T COAD 23848826 + 23848806 23848846 41 TCGTCTTCCAACCAGCAAACCGAGAAAGAAACAAACACCCC TCGTCTTCCAACCAGCAAACCGATAAAGAAACAAACACCCC < 41bp 0.884132591786234 0.601657699925845 0.44178316 0.74496144 prediction 0.564949783720778 Functional Loss - UBE2E1 ENSG00000170142 CDS Human protein_coding chr3:23848826 chr3:23848829 nonsynonymous SNV 0.963 0 24 hm5C_associated_SNPs_57485 0 0 1 0 1 UBE2E1 chr3:23848912 5'GT 23848912 Upstream 84bp
chr19 45851233 45851233 1 + G T rs180782823 45851231 + 45851211 45851251 41 CAGGAGCAGCAGCTGCTCAGCAGGGTGGCTATGAGATCCCT CAGGAGCAGCAGCTGCTCAGCATGGTGGCTATGAGATCCCT < 41bp 0.782457712688571 0.435407837099781 0.8121065 0.2349135 prediction 0.564915425377142 Functional Loss - KLC3 ENSG00000104892 CDS Human protein_coding chr19:45851231 chr19:45851233 nonsynonymous SNV 0.992 3 23 hm5C_associated_SNPs_57487 0 0 0 0 1 KLC3 chr19:45851199 3'AG 45851199 Downstream 35bp
chr9 32431832 32431832 1 + G T UCEC 32431830 + 32431810 32431850 41 GGATGTTTAAGGAAGTCTATCAGAAAATAGAGGTGAGGTCC GGATGTTTAAGGAAGTCTATCATAAAATAGAGGTGAGGTCC < 41bp 0.782456908729082 0.4498047637456 0.8359215 0.41201258 prediction 0.564913817458164 Functional Loss - ACO1 ENSG00000122729 CDS Human protein_coding chr9:32431830 chr9:32431832 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_57488 0 0 1 2 1 ACO1 chr9:32431841 5'GT 32431841 Upstream 10bp
chr3 141006295 141006295 1 + G T UCEC 141006293 + 141006273 141006313 41 GATGGGAGAGCTCACACAGACAGGTATGTGTGACCCCCATG GATGGGAGAGCTCACACAGACATGTATGTGTGACCCCCATG < 41bp 0.859585738775475 0.577132291591601 0.7176776 0.21337089 prediction 0.564906894367748 Functional Loss - PXYLP1 ENSG00000155893 CDS Human protein_coding chr3:141006293 chr3:141006295 stopgain 0.986 1 23 hm5C_associated_SNPs_57489 0 0 0 0 1 PXYLP1 chr3:141006295 5'GT 141006295 Upstream 1bp
chr16 2283182 2283182 1 + G T HNSC 2283180 + 2283160 2283200 41 GGGCATGAAAGCCCTGGCCCCAGAGGTGGGGGCGACGGGGG GGGCATGAAAGCCCTGGCCCCATAGGTGGGGGCGACGGGGG < 41bp 0.782447074406996 0.44435623850074 0.92422116 0.4258343 prediction 0.564894148813993 Functional Loss - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2283180 chr16:2283182 stopgain 0.829 1 23 hm5C_associated_SNPs_57491 0 0 1 0 1 E4F1 chr16:2283184 5'GT 2283184 Upstream 3bp
chr16 28845713 28845713 1 + A T LUAD 28845709 + 28845689 28845729 41 TATCCAATTCAGTGCCTGGGCAGCAGGGCAAGTACCGGGGA TATCCAATTCAGTGCCTGGGCAGCTGGGCAAGTACCGGGGA < 41bp 0.782444080089582 0.479339505235627 0.16766334 0.1970312 prediction 0.564888160179165 Functional Loss - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28845709 chr16:28845713 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_57492 0 0 1 0 2 ATXN2L chr16:28845664 3'AG 28845664 Downstream 50bp
chr16 28845713 28845713 1 + A T LUAD 28845709 + 28845689 28845729 41 TATCCAATTCAGTGCCTGGGCAGCAGGGCAAGTACCGGGGA TATCCAATTCAGTGCCTGGGCAGCTGGGCAAGTACCGGGGA < 41bp 0.782444080089582 0.479339505235627 0.16766334 0.1970312 prediction 0.564888160179165 Functional Loss - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28845709 chr16:28845713 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_57492 0 0 1 0 2 ATXN2L chr16:28845736 5'GT 28845736 Upstream 24bp
chr8 86389399 86389399 1 + A T PRAD 86389395 + 86389375 86389415 41 CGATCCTCGTGGCCTCCTTCCTGAATCCTTGGATTACTGGA CGATCCTCGTGGCCTCCTTCCTGATTCCTTGGATTACTGGA < 41bp 0.782414078240242 0.45764221147369 0.16147977 0.14161542 prediction 0.564828156480484 Functional Loss - CA2 ENSG00000104267 CDS Human protein_coding chr8:86389395 chr8:86389399 nonsynonymous SNV 0.110 1 25 hm5C_associated_SNPs_57495 0 0 1 0 1 CA2 chr8:86389349 3'AG 86389349 Downstream 51bp
chr2 9576392 9576392 1 + G T UCEC 9576389 + 9576369 9576409 41 GAAACGTGAAGAGCGAGAAGCAAGATTCTGTAACACTGTCC GAAACGTGAAGAGCGAGAAGCAATATTCTGTAACACTGTCC < 41bp 0.782411669475265 0.403206126517748 0.19514462 0.18042687 prediction 0.56482333895053 Functional Loss - CPSF3 ENSG00000119203 CDS Human protein_coding chr2:9576389 chr2:9576392 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_57496 0 0 1 0 2 CPSF3 chr2:9576340 3'AG 9576340 Downstream 53bp
chr2 9576392 9576392 1 + G T UCEC 9576389 + 9576369 9576409 41 GAAACGTGAAGAGCGAGAAGCAAGATTCTGTAACACTGTCC GAAACGTGAAGAGCGAGAAGCAATATTCTGTAACACTGTCC < 41bp 0.782411669475265 0.403206126517748 0.19514462 0.18042687 prediction 0.56482333895053 Functional Loss - CPSF3 ENSG00000119203 CDS Human protein_coding chr2:9576389 chr2:9576392 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_57496 0 0 1 0 2 CPSF3 chr2:9576490 5'GT 9576490 Upstream 99bp
chr9 4576732 4576732 1 + G T PAAD 4576729 + 4576709 4576749 41 TTATTGCACAGTTGAATGACCTGGACTTGGGCATTGGGCAG TTATTGCACAGTTGAATGACCTGTACTTGGGCATTGGGCAG < 41bp 0.896100623368459 0.613715080107456 0.45518872 0.26592863 prediction 0.564771086522007 Functional Loss - SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4576729 chr9:4576732 nonsynonymous SNV 0.680 1 24 hm5C_associated_SNPs_57497 0 0 0 0 1 SLC1A1 chr9:4576763 5'GT 4576763 Upstream 32bp
chr1 179631268 179631268 1 + G T LUAD 179631266 + 179631246 179631286 41 TCCCCACTGGAATGCCATGCCTGGAGTCAGTGACCATAGGT TCCCCACTGGAATGCCATGCCTTGAGTCAGTGACCATAGGT < 41bp 0.845810459198381 0.563430603568249 0.38775456 0.18096626 prediction 0.564759711260265 Functional Loss - TDRD5 ENSG00000162782 CDS Human protein_coding chr1:179631266 chr1:179631268 synonymous SNV . 0 23 hm5C_associated_SNPs_57498 0 0 0 0 1 TDRD5 chr1:179631239 3'AG 179631239 Downstream 30bp
chr15 22993100 22993100 1 + A T CESC 22993096 + 22993076 22993116 41 AGCTGAAGACGGTGTGCTTCCAGAACCTGCGGGAGGTGGGG AGCTGAAGACGGTGTGCTTCCAGATCCTGCGGGAGGTGGGG < 41bp 0.782364576899049 0.477037189707473 0.7646258 0.8091545 prediction 0.564729153798098 Functional Loss - CYFIP1 ENSG00000068793 CDS Human other chr15:22993096 chr15:22993100 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_57501 0 0 1 0 1 CYFIP1 chr15:22993025 3'AG 22993025 Downstream 76bp
chr7 55221722 55221722 1 + G T GBM 55221719 + 55221699 55221739 41 CATAGGTCTGCCGCAAATTCCGAGACGAAGCCACGTGCAAG CATAGGTCTGCCGCAAATTCCGATACGAAGCCACGTGCAAG < 41bp 0.782358262926424 0.414311561567781 0.8592238 0.18655968 prediction 0.564716525852848 Functional Loss - EGFR ENSG00000146648 CDS Human protein_coding chr7:55221719 chr7:55221722 nonsynonymous SNV 0.951 4 24 hm5C_associated_SNPs_57502 0 0 0 0 1 EGFR chr7:55221704 3'AG 55221704 Downstream 19bp
chr12 107103144 107103144 1 + G T STAD 107103142 + 107103122 107103162 41 TTCGAAAGTTTGCCAAGCAACTGGATGAGTGGCTAAAAGTG TTCGAAAGTTTGCCAAGCAACTTGATGAGTGGCTAAAAGTG < 41bp 0.848522625293812 0.566184456228765 0.56875134 0.3003707 prediction 0.564676338130094 Functional Loss - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107103142 chr12:107103144 synonymous SNV . 0 23 hm5C_associated_SNPs_57504 0 0 0 1 2 RFX4 chr12:107103108 3'AG 107103108 Downstream 37bp
chr12 107103144 107103144 1 + G T STAD 107103142 + 107103122 107103162 41 TTCGAAAGTTTGCCAAGCAACTGGATGAGTGGCTAAAAGTG TTCGAAAGTTTGCCAAGCAACTTGATGAGTGGCTAAAAGTG < 41bp 0.848522625293812 0.566184456228765 0.56875134 0.3003707 prediction 0.564676338130094 Functional Loss - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107103142 chr12:107103144 synonymous SNV . 0 23 hm5C_associated_SNPs_57504 0 0 0 1 2 RFX4 chr12:107103208 5'GT 107103208 Upstream 65bp
chr1 897819 897819 1 + G T ESCA 897816 + 897796 897836 41 CCGTCCTGAGCTGGGTGAAACACGACGTGGACGCCCGCAGG CCGTCCTGAGCTGGGTGAAACACTACGTGGACGCCCGCAGG < 41bp 0.899458305812317 0.61712610764214 0.50244135 0.3603292 prediction 0.564664396340353 Functional Loss - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:897816 chr1:897819 nonsynonymous SNV 0.907 4 24 hm5C_associated_SNPs_57505 0 0 1 0 1 KLHL17 chr1:897851 5'GT 897851 Upstream 33bp
chr16 30975983 30975983 1 + A C UCEC 30975979 + 30975959 30975999 41 GGCGGTCAGAGAACAGCTACCAAGATGCCTTTTCCCGCCGC GGCGGTCAGAGAACAGCTACCAAGCTGCCTTTTCCCGCCGC < 41bp 0.782329907727401 0.389242920920225 0.9093015 0.8144871 prediction 0.564659815454801 Functional Loss - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30975979 chr16:30975983 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_57506 0 0 1 0 1 SETD1A chr16:30975933 3'AG 30975933 Downstream 51bp
chr16 30975982 30975982 1 + G T UCEC 30975979 + 30975959 30975999 41 GGCGGTCAGAGAACAGCTACCAAGATGCCTTTTCCCGCCGC GGCGGTCAGAGAACAGCTACCAATATGCCTTTTCCCGCCGC < 41bp 0.782329907727401 0.397664519476299 0.9093015 0.27703947 prediction 0.564659815454801 Functional Loss - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30975979 chr16:30975982 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_57507 0 0 1 0 1 SETD1A chr16:30975933 3'AG 30975933 Downstream 50bp
chr12 50452864 50452864 1 + G T UCEC 50452861 + 50452841 50452881 41 TTCCGCTTTAGCCAAGTCTCCAAGAATGACCTGTATCATGC TTCCGCTTTAGCCAAGTCTCCAATAATGACCTGTATCATGC < 41bp 0.782322565224119 0.407662937157356 0.23882225 0.03275618 prediction 0.564645130448239 Functional Loss - ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50452861 chr12:50452864 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_57508 0 0 0 0 1 ASIC1 chr12:50452911 5'GT 50452911 Upstream 48bp
chr19 50983931 50983931 1 + G T LIHC 50983929 + 50983909 50983949 41 CGTGTCGGTGGTGACGCACCCCGGGGGCTGCCGGGGCCATG CGTGTCGGTGGTGACGCACCCCTGGGGCTGCCGGGGCCATG < 41bp 0.866646236969834 0.584324223629719 0.9003476 0.28204155 prediction 0.56464402668023 Functional Loss - EMC10 ENSG00000161671 CDS Human protein_coding chr19:50983929 chr19:50983931 nonsynonymous SNV 0.740 4 23 hm5C_associated_SNPs_57509 0 0 0 0 1 EMC10 chr19:50983838 3'AG 50983838 Downstream 94bp
chr12 113706599 113706599 1 + A T LUSC 113706595 + 113706575 113706615 41 AGGCCATCGTGGTGTTGGTACGGCAGATGTCCCATGTGCGG AGGCCATCGTGGTGTTGGTACGGCTGATGTCCCATGTGCGG < 41bp 0.841500594593717 0.559186187173912 0.4020794 0.3623293 prediction 0.564628814839609 Functional Loss - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113706595 chr12:113706599 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_57513 0 0 1 0 2 TPCN1 chr12:113706547 3'AG 113706547 Downstream 53bp
chr12 113706599 113706599 1 + A T LUSC 113706595 + 113706575 113706615 41 AGGCCATCGTGGTGTTGGTACGGCAGATGTCCCATGTGCGG AGGCCATCGTGGTGTTGGTACGGCTGATGTCCCATGTGCGG < 41bp 0.841500594593717 0.559186187173912 0.4020794 0.3623293 prediction 0.564628814839609 Functional Loss - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113706595 chr12:113706599 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_57513 0 0 1 0 2 TPCN1 chr12:113706677 5'GT 113706677 Upstream 79bp
chr2 219678840 219678840 1 + G C PAAD 219678839 + 219678819 219678859 41 GTGGTGGGTGTGGTGCCAGCCGGGCAAGTGCCCCAGCACAA GTGGTGGGTGTGGTGCCAGCCCGGCAAGTGCCCCAGCACAA < 41bp 0.817252321896457 0.534945437775084 0.81011623 0.31538177 prediction 0.564613768242746 Functional Loss - CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219678839 chr2:219678840 nonsynonymous SNV 0.894 1 22 hm5C_associated_SNPs_57516 0 0 1 0 2 CYP27A1 chr2:219678744 3'AG 219678744 Downstream 97bp
chr2 219678840 219678840 1 + G C PAAD 219678839 + 219678819 219678859 41 GTGGTGGGTGTGGTGCCAGCCGGGCAAGTGCCCCAGCACAA GTGGTGGGTGTGGTGCCAGCCCGGCAAGTGCCCCAGCACAA < 41bp 0.817252321896457 0.534945437775084 0.81011623 0.31538177 prediction 0.564613768242746 Functional Loss - CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219678839 chr2:219678840 nonsynonymous SNV 0.894 1 22 hm5C_associated_SNPs_57516 0 0 1 0 2 CYP27A1 chr2:219678910 5'GT 219678910 Upstream 71bp
chr20 32357951 32357951 1 + A C KIRP 32357947 + 32357927 32357967 41 TCCCAAAGCTCGACACATTTCTGGAGCACATCAAGAGCCAC TCCCAAAGCTCGACACATTTCTGGCGCACATCAAGAGCCAC < 41bp 0.910782454292857 0.628478475523071 0.429848 0.41168278 prediction 0.564607957539572 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32357947 chr20:32357951 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_57517 0 0 0 0 1 ZNF341 chr20:32357890 3'AG 32357890 Downstream 62bp
chr1 26509065 26509065 1 + A T LUSC 26509061 + 26509041 26509081 41 CCGTGCTCGAGCAGGTGCAGCTGGACAGTCCATTGGTGAGC CCGTGCTCGAGCAGGTGCAGCTGGTCAGTCCATTGGTGAGC < 41bp 0.839133033589766 0.556829506185573 0.8827727 0.83873606 prediction 0.564607054808387 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26509061 chr1:26509065 nonsynonymous SNV 0.920 0 25 hm5C_associated_SNPs_57518 0 0 1 0 3 CNKSR1 chr1:26508971 3'AG 26508971 Downstream 95bp
chr1 26509065 26509065 1 + A T LUSC 26509061 + 26509041 26509081 41 CCGTGCTCGAGCAGGTGCAGCTGGACAGTCCATTGGTGAGC CCGTGCTCGAGCAGGTGCAGCTGGTCAGTCCATTGGTGAGC < 41bp 0.839133033589766 0.556829506185573 0.8827727 0.83873606 prediction 0.564607054808387 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26509061 chr1:26509065 nonsynonymous SNV 0.920 0 25 hm5C_associated_SNPs_57518 0 0 1 0 3 CNKSR1 chr1:26508976 3'AG 26508976 Downstream 90bp
chr1 26509065 26509065 1 + A T LUSC 26509061 + 26509041 26509081 41 CCGTGCTCGAGCAGGTGCAGCTGGACAGTCCATTGGTGAGC CCGTGCTCGAGCAGGTGCAGCTGGTCAGTCCATTGGTGAGC < 41bp 0.839133033589766 0.556829506185573 0.8827727 0.83873606 prediction 0.564607054808387 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26509061 chr1:26509065 nonsynonymous SNV 0.920 0 25 hm5C_associated_SNPs_57518 0 0 1 0 3 CNKSR1 chr1:26509075 5'GT 26509075 Upstream 11bp
chr14 74727373 74727373 1 + G T COAD 74727370 + 74727350 74727390 41 GGGGAACGCCAGGCCCTGCCCAAGCTCGACAAGATGGAGCA GGGGAACGCCAGGCCCTGCCCAATCTCGACAAGATGGAGCA < 41bp 0.78229780375927 0.398928431160756 0.43562132 0.24424157 prediction 0.56459560751854 Functional Loss - VSX2 ENSG00000119614 CDS Human protein_coding chr14:74727370 chr14:74727373 nonsynonymous SNV 0.982 2 24 hm5C_associated_SNPs_57519 0 0 0 0 1 VSX2 chr14:74727297 3'AG 74727297 Downstream 77bp
chr11 119027587 119027587 1 + G C HNSC 119027586 + 119027566 119027606 41 CACTCTGTGTCCCCAGTCATCGAGGTGGCCTCTGGCGAGTA CACTCTGTGTCCCCAGTCATCCAGGTGGCCTCTGGCGAGTA < 41bp 0.782289053865973 0.464986503270044 0.9389621 0.9118465 prediction 0.564578107731947 Functional Loss - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119027586 chr11:119027587 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_57521 0 0 0 0 1 ABCG4 chr11:119027582 3'AG 119027582 Downstream 6bp
chr3 137963964 137963964 1 + G C LUSC 137963963 + 137963943 137963983 41 TAAAACATGCTCACGAACTCCGCCAGGCTGCATTCAAGCTC TAAAACATGCTCACGAACTCCCCCAGGCTGCATTCAAGCTC < 41bp 0.78979147305709 0.507513415403656 0.14978513 0.07643175 prediction 0.564556115306869 Functional Loss - ARMC8 ENSG00000114098 CDS Human protein_coding chr3:137963963 chr3:137963964 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_57524 0 0 1 0 2 ARMC8 chr3:137963930 3'AG 137963930 Downstream 35bp
chr3 137963964 137963964 1 + G C LUSC 137963963 + 137963943 137963983 41 TAAAACATGCTCACGAACTCCGCCAGGCTGCATTCAAGCTC TAAAACATGCTCACGAACTCCCCCAGGCTGCATTCAAGCTC < 41bp 0.78979147305709 0.507513415403656 0.14978513 0.07643175 prediction 0.564556115306869 Functional Loss - ARMC8 ENSG00000114098 CDS Human protein_coding chr3:137963963 chr3:137963964 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_57524 0 0 1 0 2 ARMC8 chr3:137964025 5'GT 137964025 Upstream 62bp
chr1 156848946 156848946 1 + G T rs6339 156848943 + 156848923 156848963 41 ACCTGATGCCAAGCTGCTGGCTGGTGGGGAGGATGTGGCTC ACCTGATGCCAAGCTGCTGGCTGTTGGGGAGGATGTGGCTC < 41bp 0.782261562792499 0.390586496084443 0.7194083 0.4976831 prediction 0.564523125584998 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156848943 chr1:156848946 nonsynonymous SNV 0.755 2 24 hm5C_associated_SNPs_57525 4 0 0 0 1 NTRK1 chr1:156848914 3'AG 156848914 Downstream 33bp
chr19 4323073 4323073 1 + G T ESCA 4323071 + 4323051 4323091 41 GGCGTGGGCGTGGCCTACCGCAGCCTGGGCCGCTTCGAGCA GGCGTGGGCGTGGCCTACCGCATCCTGGGCCGCTTCGAGCA < 41bp 0.782209235756586 0.443969690824925 0.83301866 0.5017626 prediction 0.564418471513173 Functional Loss - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4323071 chr19:4323073 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_57529 0 0 0 0 1 FSD1 chr19:4322983 3'AG 4322983 Downstream 91bp
chr10 99361720 99361720 1 + G T GBM 99361718 + 99361698 99361738 41 GGGAAGATGCCCAGAAACTGCAGCACCGCCTCATTGAGCCA GGGAAGATGCCCAGAAACTGCATCACCGCCTCATTGAGCCA < 41bp 0.782188970768495 0.438695405237619 0.32336843 0.061306924 prediction 0.56437794153699 Functional Loss - HOGA1 ENSG00000155252;ENSG00000241935;ENSG00000249967 CDS Human other chr10:99361718 chr10:99361720 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_57530 0 0 0 0 1 HOGA1 chr10:99361747 5'GT 99361747 Upstream 28bp
chr1 86905963 86905963 1 + G T LUAD 86905960 + 86905940 86905980 41 CAACAATTCACTCCATTGCCCTGGGTTCATCTGCAGCCCCA CAACAATTCACTCCATTGCCCTGTGTTCATCTGCAGCCCCA < 41bp 0.78217993769368 0.396067008142974 0.9282728 0.14856625 prediction 0.564359875387359 Functional Loss - CLCA2 ENSG00000137975 CDS Human protein_coding chr1:86905960 chr1:86905963 nonsynonymous SNV 0.428 4 24 hm5C_associated_SNPs_57531 0 0 0 0 1 CLCA2 chr1:86906008 5'GT 86906008 Upstream 46bp
chr4 166141117 166141117 1 + G T LUAD 166141114 + 166141094 166141134 41 AGCAGGGTCATCAGAAGCCTCTCGATTCAAAAGATGATAAT AGCAGGGTCATCAGAAGCCTCTCTATTCAAAAGATGATAAT < 41bp 0.782177484504025 0.423016412379083 0.9085213 0.91377425 prediction 0.56435496900805 Functional Loss - KLHL2 ENSG00000109466 CDS Human protein_coding chr4:166141114 chr4:166141117 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_57532 0 0 0 0 2 KLHL2 chr4:166141086 3'AG 166141086 Downstream 32bp
chr4 166141117 166141117 1 + G T LUAD 166141114 + 166141094 166141134 41 AGCAGGGTCATCAGAAGCCTCTCGATTCAAAAGATGATAAT AGCAGGGTCATCAGAAGCCTCTCTATTCAAAAGATGATAAT < 41bp 0.782177484504025 0.423016412379083 0.9085213 0.91377425 prediction 0.56435496900805 Functional Loss - KLHL2 ENSG00000109466 CDS Human protein_coding chr4:166141114 chr4:166141117 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_57532 0 0 0 0 2 KLHL2 chr4:166141211 5'GT 166141211 Upstream 95bp
chr12 28458625 28458625 1 + G T LUSC 28458623 + 28458603 28458643 41 CATCTTCTCCTGAGATTGTACTGGACCGTGACCACTCTTCT CATCTTCTCCTGAGATTGTACTTGACCGTGACCACTCTTCT < 41bp 0.782154031710588 0.463251056632016 0.074328125 0.027626008 prediction 0.564308063421176 Functional Loss - CCDC91 ENSG00000123106 CDS Human protein_coding chr12:28458623 chr12:28458625 synonymous SNV . 0 23 hm5C_associated_SNPs_57535 0 0 1 0 1 CCDC91 chr12:28458582 3'AG 28458582 Downstream 44bp
chr5 7626322 7626322 1 + G T LUAD 7626320 + 7626300 7626340 41 TTTCATCTGTGGGAACCTGGCGGGAGCCTACCATAAGCACC TTTCATCTGTGGGAACCTGGCGTGAGCCTACCATAAGCACC < 41bp 0.78215158373116 0.454891920021913 0.8682864 0.17074436 prediction 0.56430316746232 Functional Loss - ADCY2 ENSG00000078295 CDS Human protein_coding chr5:7626320 chr5:7626322 stopgain 0.768 1 23 hm5C_associated_SNPs_57536 0 0 0 0 1 ADCY2 chr5:7626280 3'AG 7626280 Downstream 43bp
chr14 105395231 105395231 1 + G T UCEC 105395229 + 105395209 105395249 41 TTCATACTACTGGTCCCTCACAGGGCCTGACATCGGGGTCA TTCATACTACTGGTCCCTCACATGGCCTGACATCGGGGTCA < 41bp 0.8729186246124 0.590767961889225 0.9511017 0.39776847 prediction 0.564301325446348 Functional Loss - PLD4 ENSG00000166428 CDS Human protein_coding chr14:105395229 chr14:105395231 nonsynonymous SNV 0.173 4 23 hm5C_associated_SNPs_57537 0 0 0 0 1 PLD4 chr14:105395269 5'GT 105395269 Upstream 39bp
chr17 4686189 4686189 1 + G C CESC 4686188 + 4686168 4686208 41 CGCACTCTATGGGATCGGTGCGAGGCGCCCCCTCGCGTGGT CGCACTCTATGGGATCGGTGCCAGGCGCCCCCTCGCGTGGT < 41bp 0.782150102323529 0.472891584215727 0.841995 0.3309468 prediction 0.564300204647059 Functional Loss - TM4SF5 ENSG00000142484 CDS Human protein_coding chr17:4686188 chr17:4686189 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_57538 0 0 1 0 1 TM4SF5 chr17:4686149 3'AG 4686149 Downstream 41bp
chr9 137715300 137715300 1 + A C rs149959668 137715296 + 137715276 137715316 41 GAAGGGTGAGGCAGGCCACCCAGGACCCCCAGGCCCCCCGG GAAGGGTGAGGCAGGCCACCCAGGCCCCCCAGGCCCCCCGG < 41bp 0.782105963408113 0.416824345910957 0.9006474 0.7985556 prediction 0.564211926816225 Functional Loss - COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137715296 chr9:137715300 synonymous SNV . 0 25 hm5C_associated_SNPs_57541 4 0 0 0 1 COL5A1 chr9:137715315 5'GT 137715315 Upstream 16bp
chr17 7291775 7291775 1 + G T UCEC 7291773 + 7291753 7291793 41 GTCCCTCGGTCCTCGTCCCACAGGGGGTGGTTCAAGCCCCC GTCCCTCGGTCCTCGTCCCACATGGGGTGGTTCAAGCCCCC < 41bp 0.868868721979174 0.586787445731196 0.9262893 0.38698483 prediction 0.564162552495955 Functional Loss - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7291773 chr17:7291775 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_57546 0 0 0 0 1 TNK1 chr17:7291725 3'AG 7291725 Downstream 51bp
chr2 37319156 37319156 1 + A C rs62621388 37319152 + 37319132 37319172 41 GATTCACATGAAAAACCAAGCTGAAGAAAAAGCTGCAGAAC GATTCACATGAAAAACCAAGCTGACGAAAAAGCTGCAGAAC < 41bp 0.782077451148031 0.385206578089844 0.09329513 0.08930096 prediction 0.564154902296062 Functional Loss - GPATCH11 ENSG00000152133 CDS Human protein_coding chr2:37319152 chr2:37319156 nonsynonymous SNV 0.939 1 25 hm5C_associated_SNPs_57548 0 0 1 0 2 GPATCH11 chr2:37319059 3'AG 37319059 Downstream 98bp
chr2 37319156 37319156 1 + A C rs62621388 37319152 + 37319132 37319172 41 GATTCACATGAAAAACCAAGCTGAAGAAAAAGCTGCAGAAC GATTCACATGAAAAACCAAGCTGACGAAAAAGCTGCAGAAC < 41bp 0.782077451148031 0.385206578089844 0.09329513 0.08930096 prediction 0.564154902296062 Functional Loss - GPATCH11 ENSG00000152133 CDS Human protein_coding chr2:37319152 chr2:37319156 nonsynonymous SNV 0.939 1 25 hm5C_associated_SNPs_57548 0 0 1 0 2 GPATCH11 chr2:37319179 5'GT 37319179 Upstream 24bp
chr22 38455325 38455325 1 + G T UCEC 38455323 + 38455303 38455343 41 TCAGCATTGGAGGAGGGGCCCAGTACTGTCCCTGCCTCTAT TCAGCATTGGAGGAGGGGCCCATTACTGTCCCTGCCTCTAT < 41bp 0.782074937506932 0.447799819842487 0.26620752 0.14499405 prediction 0.564149875013863 Functional Loss - PICK1 ENSG00000100151 CDS Human protein_coding chr22:38455323 chr22:38455325 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_57549 0 0 1 0 2 PICK1 chr22:38455241 3'AG 38455241 Downstream 85bp
chr22 38455325 38455325 1 + G T UCEC 38455323 + 38455303 38455343 41 TCAGCATTGGAGGAGGGGCCCAGTACTGTCCCTGCCTCTAT TCAGCATTGGAGGAGGGGCCCATTACTGTCCCTGCCTCTAT < 41bp 0.782074937506932 0.447799819842487 0.26620752 0.14499405 prediction 0.564149875013863 Functional Loss - PICK1 ENSG00000100151 CDS Human protein_coding chr22:38455323 chr22:38455325 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_57549 0 0 1 0 2 PICK1 chr22:38455352 5'GT 38455352 Upstream 28bp
chr22 20295420 20295420 1 + G T rs4425183 20295418 + 20295398 20295438 41 GGCCCAGGAGCGAGCCTGTGCAGCAGAGATCGGATATGAGG GGCCCAGGAGCGAGCCTGTGCATCAGAGATCGGATATGAGG < 41bp 0.782050198648398 0.465747054440899 0.13633186 0.08070457 prediction 0.564100397296795 Functional Loss - RTN4R;DGCR6L ENSG00000161132 ncRNA_exonic Human unprocessed_pseudogene chr22:20295418 chr22:20295420 . . 0 23 hm5C_associated_SNPs_57551 0 0 0 0 1 RTN4R;DGCR6L chr22:20295484 5'GT 20295484 Upstream 65bp
chr6 35436650 35436650 1 + A C SKCM 35436646 + 35436626 35436666 41 ACGGGAACCAGCGCAAGCGCCGCAAGTGAGTGCCGACCCTG ACGGGAACCAGCGCAAGCGCCGCACGTGAGTGCCGACCCTG < 41bp 0.885234664356716 0.603187556496453 0.23854473 0.13368312 prediction 0.564094215720526 Functional Loss - RPL10A ENSG00000198755 CDS Human protein_coding chr6:35436646 chr6:35436650 nonsynonymous SNV 0.840 2 25 hm5C_associated_SNPs_57552 0 0 1 0 1 RPL10A chr6:35436650 5'GT 35436650 Upstream 1bp
chr17 26817412 26817412 1 + G T LUAD 26817409 + 26817389 26817429 41 CAGTGACTGCATCCCATAACCTCGGGGGCACCGTGGGAGAC CAGTGACTGCATCCCATAACCTCTGGGGCACCGTGGGAGAC < 41bp 0.782045466608148 0.403608174781163 0.86400855 0.41102895 prediction 0.564090933216296 Functional Loss - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26817409 chr17:26817412 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_57553 0 0 0 0 1 SLC13A2 chr17:26817325 3'AG 26817325 Downstream 88bp
chr9 88635862 88635862 1 + G T BLCA 88635859 + 88635839 88635879 41 TGTGGTTATGAAGTTATTGGCAGGAGGACACAAAAAGGAAT TGTGGTTATGAAGTTATTGGCAGTAGGACACAAAAAGGAAT < 41bp 0.782041607291678 0.417163466620534 0.6465107 0.21336189 prediction 0.564083214583357 Functional Loss - NAA35 ENSG00000135040 CDS Human protein_coding chr9:88635859 chr9:88635862 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_57554 0 0 1 0 2 NAA35 chr9:88635804 3'AG 88635804 Downstream 59bp
chr9 88635862 88635862 1 + G T BLCA 88635859 + 88635839 88635879 41 TGTGGTTATGAAGTTATTGGCAGGAGGACACAAAAAGGAAT TGTGGTTATGAAGTTATTGGCAGTAGGACACAAAAAGGAAT < 41bp 0.782041607291678 0.417163466620534 0.6465107 0.21336189 prediction 0.564083214583357 Functional Loss - NAA35 ENSG00000135040 CDS Human protein_coding chr9:88635859 chr9:88635862 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_57554 0 0 1 0 2 NAA35 chr9:88635884 5'GT 88635884 Upstream 23bp
chr9 136319630 136319630 1 + G T STAD 136319628 + 136319608 136319648 41 GTGTGCAGCTCGACCAAGGCCAGGACGTGGAGGTGGACGAG GTGTGCAGCTCGACCAAGGCCATGACGTGGAGGTGGACGAG < 41bp 0.832984349012146 0.550943859777841 0.33844376 0.18629593 prediction 0.564080978468609 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136319628 chr9:136319630 nonsynonymous SNV 0.006 0 23 hm5C_associated_SNPs_57555 0 0 0 0 1 ADAMTS13 chr9:136319537 3'AG 136319537 Downstream 94bp
chr16 50063678 50063678 1 + G T ACC 50063676 + 50063656 50063696 41 GTCTGTACAGCTACTGGTGCCTGGAACTGGTTAATAGACCC GTCTGTACAGCTACTGGTGCCTTGAACTGGTTAATAGACCC < 41bp 0.830599425301001 0.54857282144663 0.4510769 0.14309087 prediction 0.564053207708742 Functional Loss - CNEP1R1 ENSG00000205423 CDS Human protein_coding chr16:50063676 chr16:50063678 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_57557 0 0 1 0 2 CNEP1R1 chr16:50063636 3'AG 50063636 Downstream 43bp
chr16 50063678 50063678 1 + G T ACC 50063676 + 50063656 50063696 41 GTCTGTACAGCTACTGGTGCCTGGAACTGGTTAATAGACCC GTCTGTACAGCTACTGGTGCCTTGAACTGGTTAATAGACCC < 41bp 0.830599425301001 0.54857282144663 0.4510769 0.14309087 prediction 0.564053207708742 Functional Loss - CNEP1R1 ENSG00000205423 CDS Human protein_coding chr16:50063676 chr16:50063678 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_57557 0 0 1 0 2 CNEP1R1 chr16:50063709 5'GT 50063709 Upstream 32bp
chr7 34867067 34867067 1 + C T SKCM 34867065 + 34867045 34867085 41 TGGAGCCTGTCTTTTCTGTTCTCCATTCCCACCCTGATCAT TGGAGCCTGTCTTTTCTGTTCTTCATTCCCACCCTGATCAT < 41bp 0.799351022064321 0.517330897036663 0.94586736 0.03380081 prediction 0.564040250055315 Functional Loss - NPSR1 ENSG00000187258 CDS Human protein_coding chr7:34867065 chr7:34867067 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_57559 0 0 0 0 1 NPSR1 chr7:34867013 3'AG 34867013 Downstream 55bp
chr1 42870229 42870229 1 + G T UCEC 42870226 + 42870206 42870246 41 TGATTGATGAAGCTGAGCCCCTGGGCTACCCAGTCGTGGTG TGATTGATGAAGCTGAGCCCCTGTGCTACCCAGTCGTGGTG < 41bp 0.781992855718793 0.400870743853508 0.46379948 0.03333813 prediction 0.563985711437586 Functional Loss - RIMKLA ENSG00000177181 CDS Human protein_coding chr1:42870226 chr1:42870229 nonsynonymous SNV 0.949 4 24 hm5C_associated_SNPs_57563 0 0 0 0 2 RIMKLA chr1:42870182 3'AG 42870182 Downstream 48bp
chr1 42870229 42870229 1 + G T UCEC 42870226 + 42870206 42870246 41 TGATTGATGAAGCTGAGCCCCTGGGCTACCCAGTCGTGGTG TGATTGATGAAGCTGAGCCCCTGTGCTACCCAGTCGTGGTG < 41bp 0.781992855718793 0.400870743853508 0.46379948 0.03333813 prediction 0.563985711437586 Functional Loss - RIMKLA ENSG00000177181 CDS Human protein_coding chr1:42870226 chr1:42870229 nonsynonymous SNV 0.949 4 24 hm5C_associated_SNPs_57563 0 0 0 0 2 RIMKLA chr1:42870268 5'GT 42870268 Upstream 40bp
chr2 79253936 79253936 1 + A T UCEC 79253932 + 79253912 79253952 41 CTGCTATGCCTTGTTTTTGTCACCAAAATCCTGGATGGATG CTGCTATGCCTTGTTTTTGTCACCTAAATCCTGGATGGATG < 41bp 0.781964365156869 0.467332848693717 0.036724687 0.076408476 prediction 0.563928730313738 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79253932 chr2:79253936 synonymous SNV . 0 25 hm5C_associated_SNPs_57568 0 0 0 0 2 REG3G chr2:79253839 3'AG 79253839 Downstream 98bp
chr2 79253936 79253936 1 + A T UCEC 79253932 + 79253912 79253952 41 CTGCTATGCCTTGTTTTTGTCACCAAAATCCTGGATGGATG CTGCTATGCCTTGTTTTTGTCACCTAAATCCTGGATGGATG < 41bp 0.781964365156869 0.467332848693717 0.036724687 0.076408476 prediction 0.563928730313738 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79253932 chr2:79253936 synonymous SNV . 0 25 hm5C_associated_SNPs_57568 0 0 0 0 2 REG3G chr2:79253957 5'GT 79253957 Upstream 22bp
chr10 43606872 43606872 1 + G T LUAD 43606869 + 43606849 43606889 41 GGCCACCGACCAGCAGACCTCTAGGCAGGCCCAGGCCCAGC GGCCACCGACCAGCAGACCTCTATGCAGGCCCAGGCCCAGC < 41bp 0.781957400482511 0.382876964264669 0.26601762 0.18011001 prediction 0.563914800965023 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43606869 chr10:43606872 nonsynonymous SNV 0.029 0 24 hm5C_associated_SNPs_57569 0 0 0 0 1 RET chr10:43606913 5'GT 43606913 Upstream 42bp
chr2 206617608 206617608 1 + C T UCEC 206617606 + 206617586 206617626 41 TCAATTGCAACTTCGATTTCCTCGAGGAGCCCTGTGGTTGG TCAATTGCAACTTCGATTTCCTTGAGGAGCCCTGTGGTTGG < 41bp 0.791336664357934 0.509438385218624 0.32032362 0.12751332 prediction 0.563796558278622 Functional Loss - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206617606 chr2:206617608 synonymous SNV . 0 23 hm5C_associated_SNPs_57575 0 0 1 0 2 NRP2 chr2:206617559 3'AG 206617559 Downstream 50bp
chr2 206617608 206617608 1 + C T UCEC 206617606 + 206617586 206617626 41 TCAATTGCAACTTCGATTTCCTCGAGGAGCCCTGTGGTTGG TCAATTGCAACTTCGATTTCCTTGAGGAGCCCTGTGGTTGG < 41bp 0.791336664357934 0.509438385218624 0.32032362 0.12751332 prediction 0.563796558278622 Functional Loss - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206617606 chr2:206617608 synonymous SNV . 0 23 hm5C_associated_SNPs_57575 0 0 1 0 2 NRP2 chr2:206617699 5'GT 206617699 Upstream 92bp
chrX 154002941 154002941 1 + G T SARC 154002939 + 154002919 154002959 41 AAGCATGGGAAGCCCACAGACAGCACACCTGCCACCTGGAA AAGCATGGGAAGCCCACAGACATCACACCTGCCACCTGGAA < 41bp 0.864169179884809 0.582291748834464 0.21058819 0.09093976 prediction 0.563754862100691 Functional Loss - DKC1 ENSG00000130826 CDS Human protein_coding chrX:154002939 chrX:154002941 nonsynonymous SNV 0.060 3 23 hm5C_associated_SNPs_57576 0 0 1 0 3 DKC1 chrX:154002877 3'AG 154002877 Downstream 65bp
chrX 154002941 154002941 1 + G T SARC 154002939 + 154002919 154002959 41 AAGCATGGGAAGCCCACAGACAGCACACCTGCCACCTGGAA AAGCATGGGAAGCCCACAGACATCACACCTGCCACCTGGAA < 41bp 0.864169179884809 0.582291748834464 0.21058819 0.09093976 prediction 0.563754862100691 Functional Loss - DKC1 ENSG00000130826 CDS Human protein_coding chrX:154002939 chrX:154002941 nonsynonymous SNV 0.060 3 23 hm5C_associated_SNPs_57576 0 0 1 0 3 DKC1 chrX:154002965 5'GT 154002965 Upstream 25bp
chrX 154002941 154002941 1 + G T SARC 154002939 + 154002919 154002959 41 AAGCATGGGAAGCCCACAGACAGCACACCTGCCACCTGGAA AAGCATGGGAAGCCCACAGACATCACACCTGCCACCTGGAA < 41bp 0.864169179884809 0.582291748834464 0.21058819 0.09093976 prediction 0.563754862100691 Functional Loss - DKC1 ENSG00000130826 CDS Human protein_coding chrX:154002939 chrX:154002941 nonsynonymous SNV 0.060 3 23 hm5C_associated_SNPs_57576 0 0 1 0 3 DKC1 chrX:154002980 5'GT 154002980 Upstream 40bp
chr19 50189933 50189933 1 + G T PCPG 50189931 + 50189911 50189951 41 GGACTACCTGACCGTGAAGACGGGCGAGGAGATCTTCGGCA GGACTACCTGACCGTGAAGACGTGCGAGGAGATCTTCGGCA < 41bp 0.855305467245628 0.573429685391337 0.4237628 0.14477068 prediction 0.563751563708581 Functional Loss - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50189931 chr19:50189933 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_57577 0 0 1 0 2 PRMT1 chr19:50189862 3'AG 50189862 Downstream 72bp
chr19 50189933 50189933 1 + G T PCPG 50189931 + 50189911 50189951 41 GGACTACCTGACCGTGAAGACGGGCGAGGAGATCTTCGGCA GGACTACCTGACCGTGAAGACGTGCGAGGAGATCTTCGGCA < 41bp 0.855305467245628 0.573429685391337 0.4237628 0.14477068 prediction 0.563751563708581 Functional Loss - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50189931 chr19:50189933 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_57577 0 0 1 0 2 PRMT1 chr19:50189983 5'GT 50189983 Upstream 51bp
chr17 1674340 1674340 1 + G T UCEC 1674338 + 1674318 1674358 41 GGCAGGAGCGGAGCAGCGAACAGAATCCATCATTCACCGGG GGCAGGAGCGGAGCAGCGAACATAATCCATCATTCACCGGG < 41bp 0.869614126823336 0.587762912604234 0.15640694 0.02991587 prediction 0.563702428438205 Functional Loss - SERPINF1 ENSG00000132386 CDS Human protein_coding chr17:1674338 chr17:1674340 stopgain 0.130 1 23 hm5C_associated_SNPs_57581 0 0 1 0 1 SERPINF1 chr17:1674323 3'AG 1674323 Downstream 18bp
chr19 18305866 18305866 1 + G T STAD 18305863 + 18305843 18305883 41 ATCAACGGCCTGACGCTGGGCTGGGACACGTACCTGTCCTA ATCAACGGCCTGACGCTGGGCTGTGACACGTACCTGTCCTA < 41bp 0.781850785227771 0.390024210721258 0.22572288 0.020427942 prediction 0.563701570455543 Functional Loss - MPV17L2 ENSG00000254858 CDS Human protein_coding chr19:18305863 chr19:18305866 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_57582 0 0 1 0 2 MPV17L2 chr19:18305768 3'AG 18305768 Downstream 99bp
chr19 18305866 18305866 1 + G T STAD 18305863 + 18305843 18305883 41 ATCAACGGCCTGACGCTGGGCTGGGACACGTACCTGTCCTA ATCAACGGCCTGACGCTGGGCTGTGACACGTACCTGTCCTA < 41bp 0.781850785227771 0.390024210721258 0.22572288 0.020427942 prediction 0.563701570455543 Functional Loss - MPV17L2 ENSG00000254858 CDS Human protein_coding chr19:18305863 chr19:18305866 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_57582 0 0 1 0 2 MPV17L2 chr19:18305896 5'GT 18305896 Upstream 31bp
chrX 47062948 47062948 1 + G C CESC 47062947 + 47062927 47062967 41 GGTTGCTTCTTAGGTGGGTGCGGGGGCCATTGGCTGTGAGC GGTTGCTTCTTAGGTGGGTGCCGGGGCCATTGGCTGTGAGC < 41bp 0.781835721905654 0.472579942286267 0.92791945 0.92337835 prediction 0.563671443811309 Functional Loss - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47062947 chrX:47062948 synonymous SNV . 0 22 hm5C_associated_SNPs_57583 0 0 1 0 1 UBA1 chrX:47062940 3'AG 47062940 Downstream 9bp
chr9 99700249 99700249 1 + A C COAD 99700245 + 99700225 99700265 41 TGGATTTCTTGGCCCTAAGCCAGGAGCTGGAGCAGGAGGAA TGGATTTCTTGGCCCTAAGCCAGGCGCTGGAGCAGGAGGAA < 41bp 0.781825411117641 0.389620364688072 0.8734469 0.8517519 prediction 0.563650822235283 Functional Loss - NUTM2G ENSG00000188152 CDS Human protein_coding chr9:99700245 chr9:99700249 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_57586 0 0 0 0 2 NUTM2G chr9:99700167 3'AG 99700167 Downstream 83bp
chr9 99700249 99700249 1 + A C COAD 99700245 + 99700225 99700265 41 TGGATTTCTTGGCCCTAAGCCAGGAGCTGGAGCAGGAGGAA TGGATTTCTTGGCCCTAAGCCAGGCGCTGGAGCAGGAGGAA < 41bp 0.781825411117641 0.389620364688072 0.8734469 0.8517519 prediction 0.563650822235283 Functional Loss - NUTM2G ENSG00000188152 CDS Human protein_coding chr9:99700245 chr9:99700249 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_57586 0 0 0 0 2 NUTM2G chr9:99700283 5'GT 99700283 Upstream 35bp
chr20 42249524 42249524 1 + G T COAD 42249522 + 42249502 42249542 41 TGTTTTCCAGTGGCTCACGACAGGAGACATCCACCTAAACC TGTTTTCCAGTGGCTCACGACATGAGACATCCACCTAAACC < 41bp 0.781821675452578 0.460649005892094 0.3386308 0.10388124 prediction 0.563643350905156 Functional Loss - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42249522 chr20:42249524 stopgain 0.791 0 23 hm5C_associated_SNPs_57587 0 0 1 0 1 IFT52 chr20:42249497 3'AG 42249497 Downstream 28bp
chr7 102106463 102106463 1 + G T KIRC 102106460 + 102106440 102106480 41 CCTTGTGCCAGTTCCCCAAGCTCGAGGAACTCAGCCTGGAG CCTTGTGCCAGTTCCCCAAGCTCTAGGAACTCAGCCTGGAG < 41bp 0.895880546483142 0.614061146208018 0.15310752 0.5372774 prediction 0.563638800550247 Functional Loss - LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102106460 chr7:102106463 stopgain 0.541 1 24 hm5C_associated_SNPs_57588 0 0 1 0 1 LRWD1 chr7:102106498 5'GT 102106498 Upstream 36bp
chr5 158696032 158696032 1 + G T PAAD 158696030 + 158696010 158696050 41 ACAGTTTCTCAAGACCCTTACAGGAGTTCTTCCAGAACGCC ACAGTTTCTCAAGACCCTTACATGAGTTCTTCCAGAACGCC < 41bp 0.828865220687776 0.547066342637675 0.87511504 0.17476198 prediction 0.563597756100203 Functional Loss - UBLCP1 ENSG00000164332 CDS Human protein_coding chr5:158696030 chr5:158696032 stopgain 0.998 1 23 hm5C_associated_SNPs_57589 0 0 1 0 1 UBLCP1 chr5:158696077 5'GT 158696077 Upstream 46bp
chr16 3188811 3188811 1 + G T BRCA 3188809 + 3188789 3188829 41 GACGGACACCTGCTTTGTCTCTGGGGTCCATGTGAGTCACC GACGGACACCTGCTTTGTCTCTTGGGTCCATGTGAGTCACC < 41bp 0.78179127084989 0.450589723151539 0.90047276 0.10988042 prediction 0.56358254169978 Functional Loss - ZNF213 ENSG00000085644 CDS Human protein_coding chr16:3188809 chr16:3188811 nonsynonymous SNV 0.024 3 23 hm5C_associated_SNPs_57591 0 0 1 0 2 ZNF213 chr16:3188746 3'AG 3188746 Downstream 66bp
chr16 3188811 3188811 1 + G T BRCA 3188809 + 3188789 3188829 41 GACGGACACCTGCTTTGTCTCTGGGGTCCATGTGAGTCACC GACGGACACCTGCTTTGTCTCTTGGGTCCATGTGAGTCACC < 41bp 0.78179127084989 0.450589723151539 0.90047276 0.10988042 prediction 0.56358254169978 Functional Loss - ZNF213 ENSG00000085644 CDS Human protein_coding chr16:3188809 chr16:3188811 nonsynonymous SNV 0.024 3 23 hm5C_associated_SNPs_57591 0 0 1 0 2 ZNF213 chr16:3188819 5'GT 3188819 Upstream 9bp
chr16 67841097 67841097 1 + G C CESC 67841096 + 67841076 67841116 41 CCACAGCTTCTCGTCCGCGTCGAGGTAGGCGCTGGCAGGGA CCACAGCTTCTCGTCCGCGTCCAGGTAGGCGCTGGCAGGGA < 41bp 0.781786236206759 0.484626091857394 0.87735677 0.4950962 prediction 0.563572472413519 Functional Loss - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67841096 chr16:67841097 synonymous SNV . 0 22 hm5C_associated_SNPs_57592 0 0 0 0 1 TSNAXIP1 chr16:67841099 5'GT 67841099 Upstream 3bp
chr4 100460412 100460412 1 + G T LUAD 100460410 + 100460390 100460430 41 AAACACCTCAATGGAACCAGCAGCAGAGACTGGGAAGCCAC AAACACCTCAATGGAACCAGCATCAGAGACTGGGAAGCCAC < 41bp 0.78177896941986 0.458457439057553 0.47103727 0.11608702 prediction 0.56355793883972 Functional Loss - C4orf17 ENSG00000138813 CDS Human protein_coding chr4:100460410 chr4:100460412 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_57595 0 0 0 0 1 C4orf17 chr4:100460320 3'AG 100460320 Downstream 93bp
chr18 9475161 9475161 1 + A C rs72936464 9475157 + 9475137 9475177 41 AGATGCCCGCGAGCCACCTTCGCCAGCACCACACCGGGGTA AGATGCCCGCGAGCCACCTTCGCCCGCACCACACCGGGGTA < 41bp 0.82722195068465 0.545457139125868 0.46988538 0.6647093 prediction 0.563529623117564 Functional Loss - RALBP1 ENSG00000017797 UTR5 Human protein_coding chr18:9475157 chr18:9475161 . . 0 25 hm5C_associated_SNPs_57598 0 0 0 0 1 RALBP1 chr18:9475174 5'GT 9475174 Upstream 14bp
chr9 140972591 140972591 1 + G T LUAD 140972588 + 140972568 140972608 41 GCGCCACGGGGGAGGCCTGGCACGAGATCATGCTGTCCTGC GCGCCACGGGGGAGGCCTGGCACTAGATCATGCTGTCCTGC < 41bp 0.781740656015609 0.420256631557437 0.48816177 0.369029 prediction 0.563481312031219 Functional Loss - CACNA1B ENSG00000148408 CDS Human protein_coding chr9:140972588 chr9:140972591 stopgain 0.990 1 24 hm5C_associated_SNPs_57601 0 0 0 0 1 CACNA1B chr9:140972566 3'AG 140972566 Downstream 26bp
chr9 80923411 80923411 1 + G T LUAD 80923408 + 80923388 80923428 41 TGATTGTCCGTGATGACCTGCTGGGGTTTGCCCTCCGAGAG TGATTGTCCGTGATGACCTGCTGTGGTTTGCCCTCCGAGAG < 41bp 0.902636699400387 0.620896148355144 0.4192084 0.27239782 prediction 0.563481102090485 Functional Loss - PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80923408 chr9:80923411 nonsynonymous SNV 0.956 4 24 hm5C_associated_SNPs_57602 0 0 1 0 2 PSAT1 chr9:80923330 3'AG 80923330 Downstream 82bp
chr9 80923411 80923411 1 + G T LUAD 80923408 + 80923388 80923428 41 TGATTGTCCGTGATGACCTGCTGGGGTTTGCCCTCCGAGAG TGATTGTCCGTGATGACCTGCTGTGGTTTGCCCTCCGAGAG < 41bp 0.902636699400387 0.620896148355144 0.4192084 0.27239782 prediction 0.563481102090485 Functional Loss - PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80923408 chr9:80923411 nonsynonymous SNV 0.956 4 24 hm5C_associated_SNPs_57602 0 0 1 0 2 PSAT1 chr9:80923499 5'GT 80923499 Upstream 89bp
chr16 23848711 23848711 1 + G T LUAD 23848709 + 23848689 23848729 41 TTTGCAGGGGCTTCGGGAAGCAGGGATTCCAGTGCCAAGGT TTTGCAGGGGCTTCGGGAAGCATGGATTCCAGTGCCAAGGT < 41bp 0.862726458014115 0.581013634531276 0.9201372 0.89106315 prediction 0.563425646965679 Functional Loss - PRKCB ENSG00000166501 CDS Human protein_coding chr16:23848709 chr16:23848711 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_57605 0 0 1 0 2 PRKCB chr16:23848696 3'AG 23848696 Downstream 16bp
chr16 23848711 23848711 1 + G T LUAD 23848709 + 23848689 23848729 41 TTTGCAGGGGCTTCGGGAAGCAGGGATTCCAGTGCCAAGGT TTTGCAGGGGCTTCGGGAAGCATGGATTCCAGTGCCAAGGT < 41bp 0.862726458014115 0.581013634531276 0.9201372 0.89106315 prediction 0.563425646965679 Functional Loss - PRKCB ENSG00000166501 CDS Human protein_coding chr16:23848709 chr16:23848711 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_57605 0 0 1 0 2 PRKCB chr16:23848727 5'GT 23848727 Upstream 17bp
chr13 114322341 114322341 1 + A T UCEC 114322337 + 114322317 114322357 41 GCCTGCCAGATGAAGGCGACCGGCAAGCTGTATGCCTGCAA GCCTGCCAGATGAAGGCGACCGGCTAGCTGTATGCCTGCAA < 41bp 0.830811385929033 0.549111539203361 0.70573854 0.5172626 prediction 0.563399693451344 Functional Loss - GRK1 ENSG00000185974 CDS Human protein_coding chr13:114322337 chr13:114322341 stopgain 0.956 1 25 hm5C_associated_SNPs_57608 0 0 0 0 1 GRK1 chr13:114322400 5'GT 114322400 Upstream 60bp
chr2 71206951 71206951 1 + G T HNSC 71206949 + 71206929 71206969 41 AACACCACCGTGGCCCTCCCCTGCATCTACTACCTGCTGGA AACACCACCGTGGCCCTCCCCTTCATCTACTACCTGCTGGA < 41bp 0.781695625408211 0.450228514743987 0.70279896 0.20034814 prediction 0.563391250816422 Functional Loss - ANKRD53 ENSG00000144031 CDS Human protein_coding chr2:71206949 chr2:71206951 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_57609 0 0 0 0 1 ANKRD53 chr2:71206990 5'GT 71206990 Upstream 40bp
chr1 181702613 181702613 1 + G T LUAD 181702611 + 181702591 181702631 41 GTCCAGAGGCTCCGGGCTGGCAGGAGGCCTTGATGAGGCTG GTCCAGAGGCTCCGGGCTGGCATGAGGCCTTGATGAGGCTG < 41bp 0.781686913975169 0.456904067270755 0.8236321 0.30947876 prediction 0.563373827950338 Functional Loss - CACNA1E ENSG00000198216 CDS Human protein_coding chr1:181702611 chr1:181702613 stopgain 0.891 0 23 hm5C_associated_SNPs_57611 0 0 0 0 1 CACNA1E chr1:181702573 3'AG 181702573 Downstream 41bp
chr16 78056612 78056612 1 + G T LUSC 78056610 + 78056590 78056630 41 CACACATCCAGATTAAAAGCCAGGAAGCACAGCAAACGTCG CACACATCCAGATTAAAAGCCATGAAGCACAGCAAACGTCG < 41bp 0.854404515829862 0.572720197564544 0.7174834 0.12905625 prediction 0.563368636530637 Functional Loss - CLEC3A ENSG00000166509 CDS Human protein_coding chr16:78056610 chr16:78056612 nonsynonymous SNV 0.985 1 23 hm5C_associated_SNPs_57613 0 0 0 0 1 CLEC3A chr16:78056638 5'GT 78056638 Upstream 27bp
chrX 37913649 37913649 1 + G T CESC 37913646 + 37913626 37913666 41 GTTGCAGGCCCCAATGGCAGCTGGAAGTGCACTGTCTGTGA GTTGCAGGCCCCAATGGCAGCTGTAAGTGCACTGTCTGTGA < 41bp 0.895512520552146 0.6138749581654 0.089842975 0.05783108 prediction 0.563275124773492 Functional Loss - SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37913646 chrX:37913649 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_57617 0 0 0 0 1 SYTL5 chrX:37913675 5'GT 37913675 Upstream 27bp
chr11 75431154 75431154 1 + A T LUSC 75431150 + 75431130 75431170 41 ACAAGCCACGGCAGGGGGGCCGGCACATCCAGGCCATCAGG ACAAGCCACGGCAGGGGGGCCGGCTCATCCAGGCCATCAGG < 41bp 0.839120183869557 0.557486651644705 0.7523631 0.39410022 prediction 0.563267064449704 Functional Loss - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75431150 chr11:75431154 nonsynonymous SNV 0.025 1 25 hm5C_associated_SNPs_57618 0 0 0 0 1 MOGAT2 chr11:75431215 5'GT 75431215 Upstream 62bp
chr6 55223780 55223780 1 + G T LUAD 55223777 + 55223757 55223797 41 GCATTAGCACCTTAAGCAAACAGGACCTCACTTGTTCAGGA GCATTAGCACCTTAAGCAAACAGTACCTCACTTGTTCAGGA < 41bp 0.781629566858287 0.405755385301002 0.18408802 0.032059163 prediction 0.563259133716574 Functional Loss - GFRAL ENSG00000187871 CDS Human protein_coding chr6:55223777 chr6:55223780 nonsynonymous SNV 0.443 3 24 hm5C_associated_SNPs_57619 0 0 0 0 1 GFRAL chr6:55223686 3'AG 55223686 Downstream 95bp
chr1 53927206 53927206 1 + G T LUSC 53927204 + 53927184 53927224 41 CCTGAGTACCCTGGTGGCTCCAGCATGCACCCCTACTGCCC CCTGAGTACCCTGGTGGCTCCATCATGCACCCCTACTGCCC < 41bp 0.863773964946387 0.58214857556105 0.34934947 0.27301055 prediction 0.563250778770675 Functional Loss - DMRTB1 ENSG00000143006 CDS Human protein_coding chr1:53927204 chr1:53927206 nonsynonymous SNV 0.316 1 23 hm5C_associated_SNPs_57621 0 0 0 0 1 DMRTB1 chr1:53927146 3'AG 53927146 Downstream 61bp
chr2 32339791 32339791 1 + G T LUAD 32339788 + 32339768 32339808 41 TTCAAAAACAGTTATGAAAACTGGATCTGCAGGCCTTTCAG TTCAAAAACAGTTATGAAAACTGTATCTGCAGGCCTTTCAG < 41bp 0.890894353446657 0.609276078814405 0.4615939 0.23922908 prediction 0.563236549264504 Functional Loss - SPAST ENSG00000021574 CDS Human protein_coding chr2:32339788 chr2:32339791 nonsynonymous SNV 0.933 0 24 hm5C_associated_SNPs_57624 0 0 1 0 1 SPAST chr2:32339707 3'AG 32339707 Downstream 85bp
chr22 45681911 45681911 1 + A T LUAD 45681907 + 45681887 45681927 41 GTGGCCTTGGAAAAGCCTCTCTGCATGTTTGACAGCAAAGA GTGGCCTTGGAAAAGCCTCTCTGCTTGTTTGACAGCAAAGA < 41bp 0.781599409743152 0.449302552950564 0.15967417 0.18691379 prediction 0.563198819486305 Functional Loss - UPK3A ENSG00000100373 CDS Human protein_coding chr22:45681907 chr22:45681911 nonsynonymous SNV 0.992 0 25 hm5C_associated_SNPs_57625 0 0 0 0 2 UPK3A chr22:45681822 3'AG 45681822 Downstream 90bp
chr22 45681911 45681911 1 + A T LUAD 45681907 + 45681887 45681927 41 GTGGCCTTGGAAAAGCCTCTCTGCATGTTTGACAGCAAAGA GTGGCCTTGGAAAAGCCTCTCTGCTTGTTTGACAGCAAAGA < 41bp 0.781599409743152 0.449302552950564 0.15967417 0.18691379 prediction 0.563198819486305 Functional Loss - UPK3A ENSG00000100373 CDS Human protein_coding chr22:45681907 chr22:45681911 nonsynonymous SNV 0.992 0 25 hm5C_associated_SNPs_57625 0 0 0 0 2 UPK3A chr22:45681977 5'GT 45681977 Upstream 67bp
chr17 40721298 40721298 1 + G T SARC 40721296 + 40721276 40721316 41 TCCATTGGCTCCCAAAAGCTCAGCAAAGCCATCGTTCTACA TCCATTGGCTCCCAAAAGCTCATCAAAGCCATCGTTCTACA < 41bp 0.856244578085571 0.574647334310334 0.78961456 0.82296443 prediction 0.563194487550475 Functional Loss - MLX ENSG00000108788 CDS Human protein_coding chr17:40721296 chr17:40721298 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_57626 0 0 1 0 1 MLX chr17:40721222 3'AG 40721222 Downstream 77bp
chr17 78023904 78023904 1 + G T LUSC 78023902 + 78023882 78023922 41 GCCGAGCCCAGCGGCAGGAGCTGGGGGTGAATCTCTATGAG GCCGAGCCCAGCGGCAGGAGCTTGGGGTGAATCTCTATGAG < 41bp 0.871620257798469 0.590030283676231 0.8996602 0.70448303 prediction 0.563179948244475 Functional Loss - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78023902 chr17:78023904 synonymous SNV . 0 23 hm5C_associated_SNPs_57629 0 0 1 0 1 CCDC40 chr17:78023863 3'AG 78023863 Downstream 42bp
chr14 63735882 63735882 1 + G T LUAD 63735879 + 63735859 63735899 41 GCTCGGACTGTATGACACCGCGGGACAGGTACATTTTTATT GCTCGGACTGTATGACACCGCGGTACAGGTACATTTTTATT < 41bp 0.891404238691302 0.609825285050995 0.24984038 0.054132164 prediction 0.563157907280614 Functional Loss - RHOJ ENSG00000126785 CDS Human protein_coding chr14:63735879 chr14:63735882 nonsynonymous SNV 0.932 5 24 hm5C_associated_SNPs_57631 0 0 0 0 2 RHOJ chr14:63735828 3'AG 63735828 Downstream 55bp
chr14 63735882 63735882 1 + G T LUAD 63735879 + 63735859 63735899 41 GCTCGGACTGTATGACACCGCGGGACAGGTACATTTTTATT GCTCGGACTGTATGACACCGCGGTACAGGTACATTTTTATT < 41bp 0.891404238691302 0.609825285050995 0.24984038 0.054132164 prediction 0.563157907280614 Functional Loss - RHOJ ENSG00000126785 CDS Human protein_coding chr14:63735879 chr14:63735882 nonsynonymous SNV 0.932 5 24 hm5C_associated_SNPs_57631 0 0 0 0 2 RHOJ chr14:63735886 5'GT 63735886 Upstream 5bp
chr2 231112660 231112660 1 + G T COAD 231112658 + 231112638 231112678 41 AAGCAACGGGATGATAGATGCGGCAAGGACATACAGCACAG AAGCAACGGGATGATAGATGCGTCAAGGACATACAGCACAG < 41bp 0.834479651174664 0.552905658774608 0.43585593 0.060645938 prediction 0.563147984800112 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231112658 chr2:231112660 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_57633 0 0 0 0 1 SP140 chr2:231112631 3'AG 231112631 Downstream 30bp
chr6 168434623 168434623 1 + G T LUAD 168434620 + 168434600 168434640 41 GCGGAAAGAGCTATACCATGCTGGGACGCCATTCGGACGAC GCGGAAAGAGCTATACCATGCTGTGACGCCATTCGGACGAC < 41bp 0.906318120845843 0.624749459917562 0.42238265 0.25488687 prediction 0.563137321856561 Functional Loss - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168434620 chr6:168434623 stopgain 0.308 1 24 hm5C_associated_SNPs_57634 0 0 0 0 2 KIF25 chr6:168434562 3'AG 168434562 Downstream 62bp
chr6 168434623 168434623 1 + G T LUAD 168434620 + 168434600 168434640 41 GCGGAAAGAGCTATACCATGCTGGGACGCCATTCGGACGAC GCGGAAAGAGCTATACCATGCTGTGACGCCATTCGGACGAC < 41bp 0.906318120845843 0.624749459917562 0.42238265 0.25488687 prediction 0.563137321856561 Functional Loss - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168434620 chr6:168434623 stopgain 0.308 1 24 hm5C_associated_SNPs_57634 0 0 0 0 2 KIF25 chr6:168434711 5'GT 168434711 Upstream 89bp
chr11 31392336 31392336 1 + G T UCEC 31392334 + 31392314 31392354 41 ATGCCAAAAAAGGATTGGTACAGCATCCTGGGAGCAGACCC ATGCCAAAAAAGGATTGGTACATCATCCTGGGAGCAGACCC < 41bp 0.78156050007131 0.44768444543553 0.35044134 0.11680102 prediction 0.56312100014262 Functional Loss - DNAJC24 ENSG00000170946 CDS Human protein_coding chr11:31392334 chr11:31392336 nonsynonymous SNV 0.690 0 23 hm5C_associated_SNPs_57635 0 0 1 0 2 DNAJC24 chr11:31392263 3'AG 31392263 Downstream 74bp
chr11 31392336 31392336 1 + G T UCEC 31392334 + 31392314 31392354 41 ATGCCAAAAAAGGATTGGTACAGCATCCTGGGAGCAGACCC ATGCCAAAAAAGGATTGGTACATCATCCTGGGAGCAGACCC < 41bp 0.78156050007131 0.44768444543553 0.35044134 0.11680102 prediction 0.56312100014262 Functional Loss - DNAJC24 ENSG00000170946 CDS Human protein_coding chr11:31392334 chr11:31392336 nonsynonymous SNV 0.690 0 23 hm5C_associated_SNPs_57635 0 0 1 0 2 DNAJC24 chr11:31392406 5'GT 31392406 Upstream 71bp
chr3 20153178 20153178 1 + G T DLBC 20153175 + 20153155 20153195 41 TTTGGGAGAACATTGCTTCGCTCGGTCTTCACTGTTATGAG TTTGGGAGAACATTGCTTCGCTCTGTCTTCACTGTTATGAG < 41bp 0.781541988415167 0.398496815939457 0.06058204 0.059881 prediction 0.563083976830335 Functional Loss - KAT2B ENSG00000114166 CDS Human protein_coding chr3:20153175 chr3:20153178 synonymous SNV . 0 24 hm5C_associated_SNPs_57638 0 0 1 0 1 KAT2B chr3:20153088 3'AG 20153088 Downstream 91bp
chr7 107335116 107335116 1 + G T SARC 107335114 + 107335094 107335134 41 ACCTGAAAGGGATGTTTATGCAGCTGTGTGACATTCCTCGT ACCTGAAAGGGATGTTTATGCATCTGTGTGACATTCCTCGT < 41bp 0.781529290003229 0.454279840023371 0.42376187 0.1300596 prediction 0.563058580006458 Functional Loss - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107335114 chr7:107335116 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_57639 0 0 0 0 2 SLC26A4 chr7:107335066 3'AG 107335066 Downstream 51bp
chr7 107335116 107335116 1 + G T SARC 107335114 + 107335094 107335134 41 ACCTGAAAGGGATGTTTATGCAGCTGTGTGACATTCCTCGT ACCTGAAAGGGATGTTTATGCATCTGTGTGACATTCCTCGT < 41bp 0.781529290003229 0.454279840023371 0.42376187 0.1300596 prediction 0.563058580006458 Functional Loss - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107335114 chr7:107335116 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_57639 0 0 0 0 2 SLC26A4 chr7:107335161 5'GT 107335161 Upstream 46bp
chr12 15702065 15702065 1 + C T UCEC 15702063 + 15702043 15702083 41 TCTTCCCATGTCGTGACCATCTCCAGCCTTCTTCCTGCCAC TCTTCCCATGTCGTGACCATCTTCAGCCTTCTTCCTGCCAC < 41bp 0.803958689366364 0.522441710758809 0.9461333 0.35774592 prediction 0.56303395721511 Functional Loss - PTPRO ENSG00000151490 CDS Human protein_coding chr12:15702063 chr12:15702065 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_57640 0 0 0 0 2 PTPRO chr12:15702028 3'AG 15702028 Downstream 38bp
chr12 15702065 15702065 1 + C T UCEC 15702063 + 15702043 15702083 41 TCTTCCCATGTCGTGACCATCTCCAGCCTTCTTCCTGCCAC TCTTCCCATGTCGTGACCATCTTCAGCCTTCTTCCTGCCAC < 41bp 0.803958689366364 0.522441710758809 0.9461333 0.35774592 prediction 0.56303395721511 Functional Loss - PTPRO ENSG00000151490 CDS Human protein_coding chr12:15702063 chr12:15702065 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_57640 0 0 0 0 2 PTPRO chr12:15702160 5'GT 15702160 Upstream 96bp
chr16 1391391 1391391 1 + A C LUSC 1391387 + 1391367 1391407 41 AGGAGCAGCGCTTCGGCTTCCGCAAGGGCAGCAAGCGCGGT AGGAGCAGCGCTTCGGCTTCCGCACGGGCAGCAAGCGCGGT < 41bp 0.781511145257594 0.375970363610804 0.17307991 0.11594838 prediction 0.563022290515188 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1391387 chr16:1391391 nonsynonymous SNV 0.195 3 25 hm5C_associated_SNPs_57642 0 0 0 0 2 BAIAP3 chr16:1391295 3'AG 1391295 Downstream 97bp
chr16 1391391 1391391 1 + A C LUSC 1391387 + 1391367 1391407 41 AGGAGCAGCGCTTCGGCTTCCGCAAGGGCAGCAAGCGCGGT AGGAGCAGCGCTTCGGCTTCCGCACGGGCAGCAAGCGCGGT < 41bp 0.781511145257594 0.375970363610804 0.17307991 0.11594838 prediction 0.563022290515188 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1391387 chr16:1391391 nonsynonymous SNV 0.195 3 25 hm5C_associated_SNPs_57642 0 0 0 0 2 BAIAP3 chr16:1391490 5'GT 1391490 Upstream 100bp
chr6 111409219 111409219 1 + G T KIRP 111409217 + 111409197 111409237 41 ACGGGTCGGTGTTCGGCATCCAGAACGCTTGCGGGGTGCTC ACGGGTCGGTGTTCGGCATCCATAACGCTTGCGGGGTGCTC < 41bp 0.860959406564778 0.579454484314804 0.5691177 0.2198613 prediction 0.563009844499949 Functional Loss - SLC16A10 ENSG00000112394 CDS Human protein_coding chr6:111409217 chr6:111409219 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_57643 0 0 1 0 1 SLC16A10 chr6:111409298 5'GT 111409298 Upstream 80bp
chr2 160028649 160028649 1 + G T LUAD 160028646 + 160028626 160028666 41 CTGCAGCCTCTGACCCCACTCAGGATCTTCATTTCACTCCG CTGCAGCCTCTGACCCCACTCAGTATCTTCATTTCACTCCG < 41bp 0.781501458709473 0.404325872589512 0.8823388 0.18072945 prediction 0.563002917418945 Functional Loss - TANC1 ENSG00000115183 CDS Human protein_coding chr2:160028646 chr2:160028649 nonsynonymous SNV 0.533 2 24 hm5C_associated_SNPs_57645 0 0 0 0 1 TANC1 chr2:160028632 3'AG 160028632 Downstream 18bp
chr2 160028648 160028648 1 + G T UCEC 160028646 + 160028626 160028666 41 CTGCAGCCTCTGACCCCACTCAGGATCTTCATTTCACTCCG CTGCAGCCTCTGACCCCACTCATGATCTTCATTTCACTCCG < 41bp 0.781501458709473 0.450942219966667 0.8823388 0.33861747 prediction 0.563002917418945 Functional Loss - TANC1 ENSG00000115183 CDS Human protein_coding chr2:160028646 chr2:160028648 nonsynonymous SNV 0.530 1 23 hm5C_associated_SNPs_57646 0 0 0 0 1 TANC1 chr2:160028632 3'AG 160028632 Downstream 17bp
chr1 76343968 76343968 1 + G T UCEC 76343965 + 76343945 76343985 41 AAATGAATTTCTTGACATAGCAAGAAGAACATACACAGAGA AAATGAATTTCTTGACATAGCAATAAGAACATACACAGAGA < 41bp 0.781473111609912 0.434588488634194 0.319515 0.053442627 prediction 0.562946223219824 Functional Loss - MSH4 ENSG00000057468 CDS Human protein_coding chr1:76343965 chr1:76343968 nonsynonymous SNV 0.992 3 24 hm5C_associated_SNPs_57647 0 0 1 0 1 MSH4 chr1:76344003 5'GT 76344003 Upstream 36bp
chr5 156727882 156727882 1 + A T SARC 156727878 + 156727858 156727898 41 AAGAACATGAAGTGCAGCGTCAAGAATGACCACTCTGCCTA AAGAACATGAAGTGCAGCGTCAAGTATGACCACTCTGCCTA < 41bp 0.781460143856567 0.46864369811039 0.33199513 0.25333622 prediction 0.562920287713135 Functional Loss - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156727878 chr5:156727882 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_57648 0 0 1 0 1 CYFIP2 chr5:156727904 5'GT 156727904 Upstream 23bp
chr22 35723368 35723368 1 + G T LUSC 35723366 + 35723346 35723386 41 CCCAGGCCGAGCCCGCAGACCTGGAGCTGCTGCAGGTGAGC CCCAGGCCGAGCCCGCAGACCTTGAGCTGCTGCAGGTGAGC < 41bp 0.854538168794314 0.57308213439226 0.4552461 0.22195843 prediction 0.562912068804109 Functional Loss - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35723366 chr22:35723368 synonymous SNV . 0 23 hm5C_associated_SNPs_57649 0 0 1 0 1 TOM1 chr22:35723380 5'GT 35723380 Upstream 13bp
chr8 19221651 19221651 1 + A T LUAD 19221647 + 19221627 19221667 41 AAACAAGCACGAGAAGACTACAAGAGGTTATCCCTCGGGGC AAACAAGCACGAGAAGACTACAAGTGGTTATCCCTCGGGGC < 41bp 0.836596771046356 0.555141739158407 0.54395086 0.37823182 prediction 0.562910063775899 Functional Loss - SH2D4A ENSG00000104611 CDS Human protein_coding chr8:19221647 chr8:19221651 nonsynonymous SNV 0.968 4 25 hm5C_associated_SNPs_57650 0 0 0 0 1 SH2D4A chr8:19221583 3'AG 19221583 Downstream 69bp
chr4 48852020 48852020 1 + G T LUSC 48852017 + 48851997 48852037 41 TTTCTTATGTGAAAACTTGCCAAGAGAAATTCAAGAAACTT TTTCTTATGTGAAAACTTGCCAATAGAAATTCAAGAAACTT < 41bp 0.781451973531791 0.425489488136201 0.30022037 0.04212767 prediction 0.562903947063582 Functional Loss - OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48852017 chr4:48852020 stopgain 1.000 1 24 hm5C_associated_SNPs_57651 0 0 1 3 2 OCIAD1 chr4:48851964 3'AG 48851964 Downstream 57bp
chr4 48852020 48852020 1 + G T LUSC 48852017 + 48851997 48852037 41 TTTCTTATGTGAAAACTTGCCAAGAGAAATTCAAGAAACTT TTTCTTATGTGAAAACTTGCCAATAGAAATTCAAGAAACTT < 41bp 0.781451973531791 0.425489488136201 0.30022037 0.04212767 prediction 0.562903947063582 Functional Loss - OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48852017 chr4:48852020 stopgain 1.000 1 24 hm5C_associated_SNPs_57651 0 0 1 3 2 OCIAD1 chr4:48852099 5'GT 48852099 Upstream 80bp
chr7 142563350 142563350 1 + G T LUAD 142563348 + 142563328 142563368 41 CCCTGCCTGGAGGGCTTCTACCGGGCCAGTTCCGACCCACC CCCTGCCTGGAGGGCTTCTACCTGGCCAGTTCCGACCCACC < 41bp 0.781437598529797 0.433907457375889 0.93607354 0.28265816 prediction 0.562875197059594 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142563348 chr7:142563350 nonsynonymous SNV 0.961 3 23 hm5C_associated_SNPs_57652 0 0 0 0 1 EPHB6 chr7:142563385 5'GT 142563385 Upstream 36bp
chr3 184298540 184298540 1 + G T LUAD 184298537 + 184298517 184298557 41 GGCGGGAAGATCCCCATCCGCTGGACTGCCCCAGAGGCCAT GGCGGGAAGATCCCCATCCGCTGTACTGCCCCAGAGGCCAT < 41bp 0.898752322823436 0.617342160763904 0.29382735 0.13560382 prediction 0.562820324119063 Functional Loss - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184298537 chr3:184298540 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_57657 0 0 0 0 1 EPHB3 chr3:184298517 3'AG 184298517 Downstream 24bp
chr19 5751773 5751773 1 + A T COAD 5751769 + 5751749 5751789 41 CCTTTCCAGCTTTTGATTTCCAGAAGTGCCTCGTGAATATC CCTTTCCAGCTTTTGATTTCCAGATGTGCCTCGTGAATATC < 41bp 0.781394236003601 0.478081000914919 0.9171066 0.91909575 prediction 0.562788472007202 Functional Loss - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5751769 chr19:5751773 nonsynonymous SNV 0.415 3 25 hm5C_associated_SNPs_57658 0 0 0 0 1 CATSPERD chr19:5751834 5'GT 5751834 Upstream 62bp
chr5 156727761 156727761 1 + G T ESCA 156727759 + 156727739 156727779 41 GGTTCTGCAGCGAGGTGAAGCGGCTGTGCCATGCCGAGCGC GGTTCTGCAGCGAGGTGAAGCGTCTGTGCCATGCCGAGCGC < 41bp 0.781386245633214 0.44839664521272 0.8784 0.33998555 prediction 0.562772491266428 Functional Loss - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156727759 chr5:156727761 synonymous SNV . 0 23 hm5C_associated_SNPs_57660 0 0 1 0 1 CYFIP2 chr5:156727723 3'AG 156727723 Downstream 39bp
chr19 50168935 50168935 1 - C A LUSC 50168938 - 50168918 50168958 41 TTGAGAGCTACCCGGAGCTCCAAGACAGGGGTGGGTTCCAG TTGAGAGCTACCCGGAGCTCCAATACAGGGGTGGGTTCCAG < 41bp 0.781382491081487 0.432170525341449 0.3714324 0.32269618 prediction 0.562764982162975 Functional Loss - BCL2L12;IRF3 ENSG00000126453;ENSG00000126456 UTR5 Human other chr19:50168938 chr19:50168935 . . 0 24 hm5C_associated_SNPs_57661 0 0 0 0 1 BCL2L12;IRF3 chr19:50168888 5'GT 50168888 Upstream 48bp
chr20 32371618 32371618 1 + G T UCEC 32371615 + 32371595 32371635 41 AGGTTCAAGTGCCAAGTGTGCAAGAAGTTCTTCCGGCGGGA AGGTTCAAGTGCCAAGTGTGCAATAAGTTCTTCCGGCGGGA < 41bp 0.781373684306466 0.390409857825908 0.392384 0.17034224 prediction 0.562747368612931 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32371615 chr20:32371618 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_57663 0 0 0 1 2 ZNF341 chr20:32371538 3'AG 32371538 Downstream 81bp
chr20 32371618 32371618 1 + G T UCEC 32371615 + 32371595 32371635 41 AGGTTCAAGTGCCAAGTGTGCAAGAAGTTCTTCCGGCGGGA AGGTTCAAGTGCCAAGTGTGCAATAAGTTCTTCCGGCGGGA < 41bp 0.781373684306466 0.390409857825908 0.392384 0.17034224 prediction 0.562747368612931 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32371615 chr20:32371618 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_57663 0 0 0 1 2 ZNF341 chr20:32371670 5'GT 32371670 Upstream 53bp
chr3 36485054 36485054 1 + G T UCEC 36485051 + 36485031 36485071 41 CCGCCAGGGCTGGTCTGCATCCAGGTGGCAAGGCTCATGCC CCGCCAGGGCTGGTCTGCATCCATGTGGCAAGGCTCATGCC < 41bp 0.781371675090258 0.388131253620095 0.92818373 0.14564058 prediction 0.562743350180516 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36485051 chr3:36485054 nonsynonymous SNV 0.120 0 24 hm5C_associated_SNPs_57664 0 0 0 0 1 STAC chr3:36485132 5'GT 36485132 Upstream 79bp
chr10 50817210 50817210 1 + G C rs80200823 50817209 + 50817189 50817229 41 CTCAGCCTGTCAGCTGAGCACGGGCGCCTCAAGGGGTGCGG CTCAGCCTGTCAGCTGAGCACCGGCGCCTCAAGGGGTGCGG < 41bp 0.781368470379248 0.49796010283666 0.8848374 0.5984939 prediction 0.562736940758495 Functional Loss - CHAT ENSG00000070748 UTR5 Human protein_coding chr10:50817209 chr10:50817210 . . 0 22 hm5C_associated_SNPs_57666 0 0 0 0 1 CHAT chr10:50817245 5'GT 50817245 Upstream 36bp
chr7 65540787 65540787 1 + G C rs565969581 65540786 + 65540766 65540806 41 GGCGGCTGCTGACGCCATCCCGGCCAGAAAAGCCCTGGCCA GGCGGCTGCTGACGCCATCCCCGCCAGAAAAGCCCTGGCCA < 41bp 0.785899078443067 0.504548283065055 0.6421389 0.40154383 prediction 0.562701590756024 Functional Loss - ASL ENSG00000126522 UTR5 Human protein_coding chr7:65540786 chr7:65540787 . . 0 22 hm5C_associated_SNPs_57668 0 0 0 0 1 ASL chr7:65540843 5'GT 65540843 Upstream 57bp
chr12 53800433 53800433 1 + A T OV 53800429 + 53800409 53800449 41 TGATGGAATACATGATGACACAGCAGGTGGAGAGGAAGGAG TGATGGAATACATGATGACACAGCTGGTGGAGAGGAAGGAG < 41bp 0.781346670186899 0.465070510423866 0.2243875 0.094641626 prediction 0.562693340373799 Functional Loss - SP1 ENSG00000185591 CDS Human protein_coding chr12:53800429 chr12:53800433 synonymous SNV . 0 25 hm5C_associated_SNPs_57669 0 0 1 0 1 SP1 chr12:53800369 3'AG 53800369 Downstream 65bp
chr12 53800431 53800431 1 + G T UCEC 53800429 + 53800409 53800449 41 TGATGGAATACATGATGACACAGCAGGTGGAGAGGAAGGAG TGATGGAATACATGATGACACATCAGGTGGAGAGGAAGGAG < 41bp 0.781346670186899 0.459885114658205 0.2243875 0.19107461 prediction 0.562693340373799 Functional Loss - SP1 ENSG00000185591 CDS Human protein_coding chr12:53800429 chr12:53800431 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_57670 0 0 1 0 1 SP1 chr12:53800369 3'AG 53800369 Downstream 63bp
chrX 86877378 86877378 1 + G T LUAD 86877376 + 86877356 86877396 41 TGCAGAATAGGCAAGGAGAACTGGGGATGCTGCTTTCTTAC TGCAGAATAGGCAAGGAGAACTTGGGATGCTGCTTTCTTAC < 41bp 0.850882440537927 0.569555411363435 0.79978347 0.25068724 prediction 0.562654058348985 Functional Loss - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86877376 chrX:86877378 synonymous SNV . 0 23 hm5C_associated_SNPs_57673 0 0 0 0 1 KLHL4 chrX:86877423 5'GT 86877423 Upstream 46bp
chr6 44392171 44392171 1 + G T UCEC 44392168 + 44392148 44392188 41 TTCTACAGGAAAGAGAATCCCGAGAACATCTCCGTTTAGGG TTCTACAGGAAAGAGAATCCCGATAACATCTCCGTTTAGGG < 41bp 0.781326407183416 0.405328849681889 0.6327695 0.38221058 prediction 0.562652814366832 Functional Loss - CDC5L ENSG00000096401 CDS Human protein_coding chr6:44392168 chr6:44392171 stopgain 0.998 1 24 hm5C_associated_SNPs_57674 0 0 1 0 1 CDC5L chr6:44392156 3'AG 44392156 Downstream 16bp
chr2 175269041 175269041 1 + A C LIHC 175269037 + 175269017 175269057 41 GCTACAAGCTTCTAAATAAGCACAAAGGTAATTTTATCATA GCTACAAGCTTCTAAATAAGCACACAGGTAATTTTATCATA < 41bp 0.781293241307413 0.379746380816156 0.0208444 0.057844996 prediction 0.562586482614827 Functional Loss - SCRN3 ENSG00000144306 CDS Human protein_coding chr2:175269037 chr2:175269041 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_57677 0 0 0 0 1 SCRN3 chr2:175269043 5'GT 175269043 Upstream 3bp
chr1 241912978 241912978 1 + A T LUSC 241912974 + 241912954 241912994 41 TCAAAGCCCAAGAAAAACACCAGCAGCTGGTCCTGGCCTTG TCAAAGCCCAAGAAAAACACCAGCTGCTGGTCCTGGCCTTG < 41bp 0.781279530702941 0.463692378413286 0.34410453 0.58058906 prediction 0.562559061405882 Functional Loss - WDR64 ENSG00000162843 CDS Human protein_coding chr1:241912974 chr1:241912978 nonsynonymous SNV 0.033 0 25 hm5C_associated_SNPs_57678 0 0 0 0 1 WDR64 chr1:241913024 5'GT 241913024 Upstream 47bp
chr20 17207991 17207991 1 + G T GBM 17207988 + 17207968 17208008 41 CTCCCAGTGGAAGGCGGCCGCCGGGTTCCTCTTCTGTGTCA CTCCCAGTGGAAGGCGGCCGCCGTGTTCCTCTTCTGTGTCA < 41bp 0.781269306728338 0.40141845933056 0.8793931 0.24364775 prediction 0.562538613456676 Functional Loss - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17207988 chr20:17207991 nonsynonymous SNV 0.654 0 24 hm5C_associated_SNPs_57680 0 0 0 0 1 PCSK2 chr20:17207975 3'AG 17207975 Downstream 17bp
chr1 118003128 118003128 1 + G T LUAD 118003126 + 118003106 118003146 41 TTCAGTGGAGTAGGGCGAAACTGGGGCTGGGCATCTGCAGG TTCAGTGGAGTAGGGCGAAACTTGGGCTGGGCATCTGCAGG < 41bp 0.857824738615645 0.576565169443408 0.8777607 0.25178462 prediction 0.562519138344473 Functional Loss - MAN1A2 ENSG00000198162 CDS Human protein_coding chr1:118003126 chr1:118003128 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_57684 0 0 1 0 1 MAN1A2 chr1:118003111 3'AG 118003111 Downstream 18bp
chr15 29367139 29367139 1 + G T LUSC 29367136 + 29367116 29367156 41 GTTTCCAGGTTTGCAATGGTCTGGAGCAGCCAAGGAAGCAG GTTTCCAGGTTTGCAATGGTCTGTAGCAGCCAAGGAAGCAG < 41bp 0.892630260081849 0.611389414175854 0.36332256 0.20611706 prediction 0.562481691811991 Functional Loss - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29367136 chr15:29367139 stopgain 1.000 1 24 hm5C_associated_SNPs_57686 0 0 1 0 2 APBA2 chr15:29367124 3'AG 29367124 Downstream 16bp
chr15 29367139 29367139 1 + G T LUSC 29367136 + 29367116 29367156 41 GTTTCCAGGTTTGCAATGGTCTGGAGCAGCCAAGGAAGCAG GTTTCCAGGTTTGCAATGGTCTGTAGCAGCCAAGGAAGCAG < 41bp 0.892630260081849 0.611389414175854 0.36332256 0.20611706 prediction 0.562481691811991 Functional Loss - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29367136 chr15:29367139 stopgain 1.000 1 24 hm5C_associated_SNPs_57686 0 0 1 0 2 APBA2 chr15:29367204 5'GT 29367204 Upstream 66bp
chr17 58678246 58678246 1 + G T LUAD 58678244 + 58678224 58678264 41 ACCTTGCCATGTGGAAGAAACTGGGTAAGTTCCCTGGCTTG ACCTTGCCATGTGGAAGAAACTTGGTAAGTTCCCTGGCTTG < 41bp 0.855996408318003 0.574774795754572 0.92566556 0.83040863 prediction 0.562443225126862 Functional Loss - PPM1D ENSG00000170836 CDS Human protein_coding chr17:58678244 chr17:58678246 synonymous SNV . 0 23 hm5C_associated_SNPs_57688 0 0 1 0 1 PPM1D chr17:58678247 5'GT 58678247 Upstream 2bp
chr4 110789009 110789009 1 + G T ESCA 110789006 + 110788986 110789026 41 CCACCAAAATCATGTCTGCTCTGGGCAGTAATGTTCTACTG CCACCAAAATCATGTCTGCTCTGTGCAGTAATGTTCTACTG < 41bp 0.899582475815725 0.618368765327532 0.15855691 0.075381756 prediction 0.562427420976386 Functional Loss - LRIT3 ENSG00000183423 CDS Human protein_coding chr4:110789006 chr4:110789009 nonsynonymous SNV 0.982 5 24 hm5C_associated_SNPs_57690 0 0 0 0 1 LRIT3 chr4:110789102 5'GT 110789102 Upstream 94bp
chr11 1464775 1464775 1 + G T ACC 1464773 + 1464753 1464793 41 AGCTGCTGGAGAAGGTGAAGCGGGGCGTGTTCCACATGCCG AGCTGCTGGAGAAGGTGAAGCGTGGCGTGTTCCACATGCCG < 41bp 0.781209985965904 0.448099460342539 0.9062046 0.5769345 prediction 0.562419971931808 Functional Loss - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1464773 chr11:1464775 synonymous SNV . 0 23 hm5C_associated_SNPs_57691 0 0 0 0 2 BRSK2 chr11:1464719 3'AG 1464719 Downstream 57bp
chr11 1464775 1464775 1 + G T ACC 1464773 + 1464753 1464793 41 AGCTGCTGGAGAAGGTGAAGCGGGGCGTGTTCCACATGCCG AGCTGCTGGAGAAGGTGAAGCGTGGCGTGTTCCACATGCCG < 41bp 0.781209985965904 0.448099460342539 0.9062046 0.5769345 prediction 0.562419971931808 Functional Loss - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1464773 chr11:1464775 synonymous SNV . 0 23 hm5C_associated_SNPs_57691 0 0 0 0 2 BRSK2 chr11:1464865 5'GT 1464865 Upstream 91bp
chr11 64854053 64854053 1 + G T LIHC 64854050 + 64854030 64854070 41 GAGAAGCTGGCCACAGTCAACTGGGCCCGGGCAGGACTGGG GAGAAGCTGGCCACAGTCAACTGTGCCCGGGCAGGACTGGG < 41bp 0.898224700941063 0.617028820540178 0.7787595 0.50006795 prediction 0.562391760801769 Functional Loss - ZFPL1 ENSG00000162300 CDS Human protein_coding chr11:64854050 chr11:64854053 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_57692 0 0 1 0 1 ZFPL1 chr11:64854080 5'GT 64854080 Upstream 28bp
chr9 131678392 131678392 1 + G T UCEC 131678390 + 131678370 131678410 41 TCCAGATCGAGACGCTCCCTCCGGAGCTCTTCCAGTGCCGG TCCAGATCGAGACGCTCCCTCCTGAGCTCTTCCAGTGCCGG < 41bp 0.781195219758231 0.447367681904896 0.8168876 0.14016384 prediction 0.562390439516461 Functional Loss - LRRC8A ENSG00000136802 CDS Human protein_coding chr9:131678390 chr9:131678392 synonymous SNV . 0 23 hm5C_associated_SNPs_57693 0 0 0 0 1 LRRC8A chr9:131678375 3'AG 131678375 Downstream 18bp
chr16 57596058 57596058 1 + A C rs141637452 57596054 + 57596034 57596074 41 GCCTGTGCCTTCTGACTTTGCAGAATGCAACAACAGGTAAG GCCTGTGCCTTCTGACTTTGCAGACTGCAACAACAGGTAAG < 41bp 0.781174234970109 0.385085012706424 0.27568397 0.42424694 prediction 0.562348469940218 Functional Loss - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57596054 chr16:57596058 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_57696 0 0 0 0 2 ADGRG5 chr16:57595968 3'AG 57595968 Downstream 91bp
chr16 57596058 57596058 1 + A C rs141637452 57596054 + 57596034 57596074 41 GCCTGTGCCTTCTGACTTTGCAGAATGCAACAACAGGTAAG GCCTGTGCCTTCTGACTTTGCAGACTGCAACAACAGGTAAG < 41bp 0.781174234970109 0.385085012706424 0.27568397 0.42424694 prediction 0.562348469940218 Functional Loss - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57596054 chr16:57596058 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_57696 0 0 0 0 2 ADGRG5 chr16:57596069 5'GT 57596069 Upstream 12bp
chr1 46812709 46812709 1 + G T LUSC 46812706 + 46812686 46812726 41 GCTTGACCTATGTGCAGCTCCTGGGGGAAAGACACTAGCGT GCTTGACCTATGTGCAGCTCCTGTGGGAAAGACACTAGCGT < 41bp 0.781173510004517 0.40953438136253 0.8820882 0.20166859 prediction 0.562347020009033 Functional Loss - NSUN4 ENSG00000117481 CDS Human protein_coding chr1:46812706 chr1:46812709 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_57697 0 0 1 0 1 NSUN4 chr1:46812747 5'GT 46812747 Upstream 39bp
chr12 117465839 117465839 1 + G T LUSC 117465836 + 117465816 117465856 41 CTTTGTGCTCTTTCTAGACACCGGGGGCTGATCCGCGCCTA CTTTGTGCTCTTTCTAGACACCGTGGGCTGATCCGCGCCTA < 41bp 0.781160319965359 0.388838658337252 0.90825766 0.19030607 prediction 0.562320639930718 Functional Loss - FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117465836 chr12:117465839 synonymous SNV . 0 24 hm5C_associated_SNPs_57698 0 0 0 0 1 FBXW8 chr12:117465833 3'AG 117465833 Downstream 7bp
chr19 51670781 51670781 1 + G T rs547909770 51670778 + 51670758 51670798 41 CAGGGCCCTCGCTCAGGATGCAAGATTCCGGCTGGAGATGC CAGGGCCCTCGCTCAGGATGCAATATTCCGGCTGGAGATGC < 41bp 0.781149489266125 0.47685580686257 0.28883985 0.11894816 prediction 0.562298978532251 Functional Loss - SIGLEC17P ENSG00000171101 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:51670778 chr19:51670781 . . 0 24 hm5C_associated_SNPs_57701 0 0 0 0 1 SIGLEC17P chr19:51670761 3'AG 51670761 Downstream 21bp
chr10 71020967 71020967 1 + G T LIHC 71020965 + 71020945 71020985 41 TCCTGATCGACCTGACCAAGCAGGGTCTCCTCTTCCGAGGG TCCTGATCGACCTGACCAAGCATGGTCTCCTCTTCCGAGGG < 41bp 0.87597137366967 0.594842883058079 0.930128 0.32854283 prediction 0.562256981223182 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71020965 chr10:71020967 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_57702 0 0 0 1 2 HKDC1 chr10:71020895 3'AG 71020895 Downstream 73bp
chr10 71020967 71020967 1 + G T LIHC 71020965 + 71020945 71020985 41 TCCTGATCGACCTGACCAAGCAGGGTCTCCTCTTCCGAGGG TCCTGATCGACCTGACCAAGCATGGTCTCCTCTTCCGAGGG < 41bp 0.87597137366967 0.594842883058079 0.930128 0.32854283 prediction 0.562256981223182 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71020965 chr10:71020967 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_57702 0 0 0 1 2 HKDC1 chr10:71021050 5'GT 71021050 Upstream 84bp
chr12 3031560 3031560 1 + A T LUSC 3031556 + 3031536 3031576 41 AGCCAGGACTTCAGGAGCGTCTCCAAAAGCATGGTGAGGAC AGCCAGGACTTCAGGAGCGTCTCCTAAAGCATGGTGAGGAC < 41bp 0.781127120401423 0.426583839033742 0.9775624 0.82943964 prediction 0.562254240802846 Functional Loss - TULP3 ENSG00000078246 CDS Human protein_coding chr12:3031556 chr12:3031560 nonsynonymous SNV 0.876 1 25 hm5C_associated_SNPs_57704 0 0 1 0 1 TULP3 chr12:3031568 5'GT 3031568 Upstream 9bp
chr8 38109494 38109494 1 + G T rs372844778 38109492 + 38109472 38109512 41 ATCCCCAAAGAATCTGAGTTCTGCAGTAGCAGTAATACTAG ATCCCCAAAGAATCTGAGTTCTTCAGTAGCAGTAATACTAG < 41bp 0.84007438620744 0.558958001388249 0.26428217 0.28125674 prediction 0.562232769638382 Functional Loss - DDHD2 ENSG00000085788 CDS Human protein_coding chr8:38109492 chr8:38109494 nonsynonymous SNV 0.765 0 23 hm5C_associated_SNPs_57706 0 0 1 0 1 DDHD2 chr8:38109546 5'GT 38109546 Upstream 53bp
chr9 1052075 1052075 1 + G T rs372312394 1052073 + 1052053 1052093 41 GCCAGTGCGCCAACTGCCTGCTGGTGGTGGAGCGGCAGCGC GCCAGTGCGCCAACTGCCTGCTTGTGGTGGAGCGGCAGCGC < 41bp 0.849825040706079 0.5687221961262 0.7009526 0.37092924 prediction 0.562205689159757 Functional Loss - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1052073 chr9:1052075 synonymous SNV . 0 23 hm5C_associated_SNPs_57707 0 0 0 0 1 DMRT2 chr9:1052138 5'GT 1052138 Upstream 64bp
chr7 73098210 73098210 1 + G T UCEC 73098208 + 73098188 73098228 41 GCCCCTGTTGCTGGCGTTGCCCGGAAAGGCCGTAGAATTTG GCCCCTGTTGCTGGCGTTGCCCTGAAAGGCCGTAGAATTTG < 41bp 0.813098900554395 0.532020180842261 0.32703957 0.027170181 prediction 0.562157439424269 Functional Loss - BUD23 ENSG00000071462 CDS Human protein_coding chr7:73098208 chr7:73098210 nonsynonymous SNV 0.009 0 23 hm5C_associated_SNPs_57709 0 0 1 0 1 BUD23 chr7:73098231 5'GT 73098231 Upstream 22bp
chr12 111336788 111336788 1 + G C LUSC 111336787 + 111336767 111336807 41 GATATGTATGAGAGCAAGTACGGGGAGGTCAGCAAGACCTT GATATGTATGAGAGCAAGTACCGGGAGGTCAGCAAGACCTT < 41bp 0.821464187483718 0.540426043752899 0.90161145 0.89962095 prediction 0.562076287461637 Functional Loss - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111336787 chr12:111336788 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_57711 0 0 0 0 1 CCDC63 chr12:111336737 3'AG 111336737 Downstream 52bp
chr16 76350378 76350378 1 + A T LUAD 76350374 + 76350354 76350394 41 TTCAGCAGTTCTTCCGAGCTCTCCAGCAGTCATGGTCCTGG TTCAGCAGTTCTTCCGAGCTCTCCTGCAGTCATGGTCCTGG < 41bp 0.781012122332067 0.435462026050733 0.92952466 0.14859292 prediction 0.562024244664135 Functional Loss - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76350374 chr16:76350378 nonsynonymous SNV 0.302 3 25 hm5C_associated_SNPs_57715 0 0 0 0 2 CNTNAP4 chr16:76350310 3'AG 76350310 Downstream 69bp
chr16 76350378 76350378 1 + A T LUAD 76350374 + 76350354 76350394 41 TTCAGCAGTTCTTCCGAGCTCTCCAGCAGTCATGGTCCTGG TTCAGCAGTTCTTCCGAGCTCTCCTGCAGTCATGGTCCTGG < 41bp 0.781012122332067 0.435462026050733 0.92952466 0.14859292 prediction 0.562024244664135 Functional Loss - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76350374 chr16:76350378 nonsynonymous SNV 0.302 3 25 hm5C_associated_SNPs_57715 0 0 0 0 2 CNTNAP4 chr16:76350420 5'GT 76350420 Upstream 43bp
chr9 90396072 90396072 1 + G T UCEC 90396069 + 90396049 90396089 41 GCTCTGGAGACTGGAAAGTCCAAGGTCACAGAGGTGCATCT GCTCTGGAGACTGGAAAGTCCAATGTCACAGAGGTGCATCT < 41bp 0.781010645185711 0.422769319023512 0.23854032 0.023869634 prediction 0.562021290371423 Functional Loss - CTSL3P ENSG00000188029 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:90396069 chr9:90396072 . . 0 24 hm5C_associated_SNPs_57717 0 0 0 0 2 CTSL3P chr9:90396050 3'AG 90396050 Downstream 23bp
chr9 90396072 90396072 1 + G T UCEC 90396069 + 90396049 90396089 41 GCTCTGGAGACTGGAAAGTCCAAGGTCACAGAGGTGCATCT GCTCTGGAGACTGGAAAGTCCAATGTCACAGAGGTGCATCT < 41bp 0.781010645185711 0.422769319023512 0.23854032 0.023869634 prediction 0.562021290371423 Functional Loss - CTSL3P ENSG00000188029 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:90396069 chr9:90396072 . . 0 24 hm5C_associated_SNPs_57717 0 0 0 0 2 CTSL3P chr9:90396143 5'GT 90396143 Upstream 72bp
chrX 21887700 21887700 1 + G T UCEC 21887697 + 21887677 21887717 41 ATTGTCCTGTTACTAATGTGCAAGATTGGAATGAATGTTTA ATTGTCCTGTTACTAATGTGCAATATTGGAATGAATGTTTA < 41bp 0.780978182612061 0.411885705471224 0.05988729 0.029809207 prediction 0.561956365224123 Functional Loss - MBTPS2 ENSG00000012174 CDS Human protein_coding chrX:21887697 chrX:21887700 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_57721 0 0 1 0 2 MBTPS2 chrX:21887616 3'AG 21887616 Downstream 85bp
chrX 21887700 21887700 1 + G T UCEC 21887697 + 21887677 21887717 41 ATTGTCCTGTTACTAATGTGCAAGATTGGAATGAATGTTTA ATTGTCCTGTTACTAATGTGCAATATTGGAATGAATGTTTA < 41bp 0.780978182612061 0.411885705471224 0.05988729 0.029809207 prediction 0.561956365224123 Functional Loss - MBTPS2 ENSG00000012174 CDS Human protein_coding chrX:21887697 chrX:21887700 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_57721 0 0 1 0 2 MBTPS2 chrX:21887796 5'GT 21887796 Upstream 97bp
chr21 47404357 47404357 1 + G T GBM 47404354 + 47404334 47404374 41 ACCTACACCGACTGCGCTATCAAGAAGGGGCTGGAGCAGCT ACCTACACCGACTGCGCTATCAATAAGGGGCTGGAGCAGCT < 41bp 0.807646318016824 0.526674235647921 0.90778804 0.21556506 prediction 0.561944164737806 Functional Loss - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47404354 chr21:47404357 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_57722 0 0 0 0 1 COL6A1 chr21:47404383 5'GT 47404383 Upstream 27bp
chr6 69665972 69665972 1 + A C STAD 69665968 + 69665948 69665988 41 AGCCAGTGCTCAGTAACGTGCTCGAATGGGACTCAGCAGAG AGCCAGTGCTCAGTAACGTGCTCGCATGGGACTCAGCAGAG < 41bp 0.780971220642711 0.438365586617057 0.38398877 0.22804421 prediction 0.561942441285422 Functional Loss - ADGRB3 ENSG00000135298 CDS Human protein_coding chr6:69665968 chr6:69665972 nonsynonymous SNV 0.732 2 25 hm5C_associated_SNPs_57723 0 0 1 0 1 ADGRB3 chr6:69665916 3'AG 69665916 Downstream 57bp
chr22 45946418 45946418 1 + G T UCEC 45946415 + 45946395 45946435 41 ATCCACAACTGCTCCATCAACGAGACCTGCTTCAACATCCA ATCCACAACTGCTCCATCAACGATACCTGCTTCAACATCCA < 41bp 0.780965608670376 0.388870040859053 0.28255254 0.13876635 prediction 0.561931217340752 Functional Loss - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45946415 chr22:45946418 nonsynonymous SNV 0.986 1 24 hm5C_associated_SNPs_57724 0 0 1 0 2 FBLN1 chr22:45946372 3'AG 45946372 Downstream 47bp
chr22 45946418 45946418 1 + G T UCEC 45946415 + 45946395 45946435 41 ATCCACAACTGCTCCATCAACGAGACCTGCTTCAACATCCA ATCCACAACTGCTCCATCAACGATACCTGCTTCAACATCCA < 41bp 0.780965608670376 0.388870040859053 0.28255254 0.13876635 prediction 0.561931217340752 Functional Loss - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45946415 chr22:45946418 nonsynonymous SNV 0.986 1 24 hm5C_associated_SNPs_57724 0 0 1 0 2 FBLN1 chr22:45946495 5'GT 45946495 Upstream 78bp
chr1 154962719 154962719 1 + G T UCEC 154962717 + 154962697 154962737 41 CTGAGCTGGAACAGTTTCTACAGGACACTATCAAGAGGTAC CTGAGCTGGAACAGTTTCTACATGACACTATCAAGAGGTAC < 41bp 0.838773262110253 0.557824101543541 0.24948207 0.18657336 prediction 0.561898321133424 Functional Loss - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962717 chr1:154962719 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_57725 0 0 1 0 2 FLAD1 chr1:154962635 3'AG 154962635 Downstream 85bp
chr1 154962719 154962719 1 + G T UCEC 154962717 + 154962697 154962737 41 CTGAGCTGGAACAGTTTCTACAGGACACTATCAAGAGGTAC CTGAGCTGGAACAGTTTCTACATGACACTATCAAGAGGTAC < 41bp 0.838773262110253 0.557824101543541 0.24948207 0.18657336 prediction 0.561898321133424 Functional Loss - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962717 chr1:154962719 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_57725 0 0 1 0 2 FLAD1 chr1:154962733 5'GT 154962733 Upstream 15bp
chr19 45975914 45975914 1 + G T STAD 45975912 + 45975892 45975932 41 TGTGCTGGTGGCCCACAAACCGGGCTGCAAGATCCCCTACG TGTGCTGGTGGCCCACAAACCGTGCTGCAAGATCCCCTACG < 41bp 0.846493318043479 0.565546060495415 0.90431297 0.53595066 prediction 0.561894515096127 Functional Loss - FOSB ENSG00000125740 CDS Human protein_coding chr19:45975912 chr19:45975914 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_57726 0 0 0 0 1 FOSB chr19:45975964 5'GT 45975964 Upstream 51bp
chr3 155611436 155611436 1 + G T UCEC 155611434 + 155611414 155611454 41 GAGGGAACTGTTCGTGCAGTCTGAAATTTTCCCCTTGGAAA GAGGGAACTGTTCGTGCAGTCTTAAATTTTCCCCTTGGAAA < 41bp 0.780932580885944 0.463188360257981 0.042053252 0.08503312 prediction 0.561865161771888 Functional Loss - GMPS ENSG00000163655 CDS Human protein_coding chr3:155611434 chr3:155611436 stopgain 1.000 1 23 hm5C_associated_SNPs_57727 0 0 1 0 1 GMPS chr3:155611488 5'GT 155611488 Upstream 53bp
chr16 1391405 1391405 1 + G T LUAD 1391402 + 1391382 1391422 41 GCTTCCGCAAGGGCAGCAAGCGCGGTGGACCCCTGCCTGCC GCTTCCGCAAGGGCAGCAAGCGCTGTGGACCCCTGCCTGCC < 41bp 0.900501099016758 0.619570206173614 0.9230391 0.29673278 prediction 0.561861785686288 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1391402 chr16:1391405 nonsynonymous SNV 0.004 2 24 hm5C_associated_SNPs_57728 0 0 0 0 1 BAIAP3 chr16:1391490 5'GT 1391490 Upstream 86bp
chr11 134131769 134131769 1 + A T COAD 134131765 + 134131745 134131785 41 CTCCATGGCCAAGCTCTTTGCTACAGATGAATGCTTTGCCG CTCCATGGCCAAGCTCTTTGCTACTGATGAATGCTTTGCCG < 41bp 0.846825004403348 0.565907100217353 0.5166205 0.060769737 prediction 0.561835808371989 Functional Loss - ACAD8 ENSG00000151498 CDS Human protein_coding chr11:134131765 chr11:134131769 synonymous SNV . 0 25 hm5C_associated_SNPs_57729 0 0 0 0 1 ACAD8 chr11:134131784 5'GT 134131784 Upstream 16bp
chr4 153809375 153809375 1 + G T UCEC 153809373 + 153809353 153809393 41 TGCCAAAGATTGAGCAGTCACAGCATCTCTTCCAAGCACAT TGCCAAAGATTGAGCAGTCACATCATCTCTTCCAAGCACAT < 41bp 0.780911292573779 0.466269718155651 0.026958406 0.012561262 prediction 0.561822585147558 Functional Loss - ARFIP1 ENSG00000164144 CDS Human protein_coding chr4:153809373 chr4:153809375 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_57730 0 0 1 0 2 ARFIP1 chr4:153809285 3'AG 153809285 Downstream 91bp
chr4 153809375 153809375 1 + G T UCEC 153809373 + 153809353 153809393 41 TGCCAAAGATTGAGCAGTCACAGCATCTCTTCCAAGCACAT TGCCAAAGATTGAGCAGTCACATCATCTCTTCCAAGCACAT < 41bp 0.780911292573779 0.466269718155651 0.026958406 0.012561262 prediction 0.561822585147558 Functional Loss - ARFIP1 ENSG00000164144 CDS Human protein_coding chr4:153809373 chr4:153809375 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_57730 0 0 1 0 2 ARFIP1 chr4:153809459 5'GT 153809459 Upstream 85bp
chr3 40499409 40499409 1 + G T UCEC 40499407 + 40499387 40499427 41 AGGCGCTTCGTGGAGGTTGGCCGGGTGGCCTATGTCTCCTT AGGCGCTTCGTGGAGGTTGGCCTGGTGGCCTATGTCTCCTT < 41bp 0.87601839501325 0.595121406056089 0.48529992 0.04370925 prediction 0.561793977914321 Functional Loss - RPL14 ENSG00000188846 CDS Human protein_coding chr3:40499407 chr3:40499409 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_57732 0 0 1 0 1 RPL14 chr3:40499381 3'AG 40499381 Downstream 29bp
chr1 86905931 86905931 1 + G T LUAD 86905929 + 86905909 86905949 41 AATTGCTTACCCACTGTGCTCAGCAGTGGTTCAACAATTCA AATTGCTTACCCACTGTGCTCATCAGTGGTTCAACAATTCA < 41bp 0.848341658945363 0.567469503583635 0.12395316 0.029735595 prediction 0.561744310723458 Functional Loss - CLCA2 ENSG00000137975 CDS Human protein_coding chr1:86905929 chr1:86905931 nonsynonymous SNV 0.740 2 23 hm5C_associated_SNPs_57734 0 0 0 0 1 CLCA2 chr1:86906008 5'GT 86906008 Upstream 78bp
chr7 34010006 34010006 1 + G T LUSC 34010004 + 34009984 34010024 41 GTAAAAACCCTTTGGAGCATCTGGGAATGTGCTGCCCCACA GTAAAAACCCTTTGGAGCATCTTGGAATGTGCTGCCCCACA < 41bp 0.78087095373437 0.438843547025815 0.7979396 0.6468675 prediction 0.56174190746874 Functional Loss - BMPER ENSG00000164619 CDS Human protein_coding chr7:34010004 chr7:34010006 nonsynonymous SNV 0.465 1 23 hm5C_associated_SNPs_57736 0 0 0 0 2 BMPER chr7:34009941 3'AG 34009941 Downstream 66bp
chr7 34010006 34010006 1 + G T LUSC 34010004 + 34009984 34010024 41 GTAAAAACCCTTTGGAGCATCTGGGAATGTGCTGCCCCACA GTAAAAACCCTTTGGAGCATCTTGGAATGTGCTGCCCCACA < 41bp 0.78087095373437 0.438843547025815 0.7979396 0.6468675 prediction 0.56174190746874 Functional Loss - BMPER ENSG00000164619 CDS Human protein_coding chr7:34010004 chr7:34010006 nonsynonymous SNV 0.465 1 23 hm5C_associated_SNPs_57736 0 0 0 0 2 BMPER chr7:34010031 5'GT 34010031 Upstream 26bp
chr16 58426595 58426595 1 + G T COAD 58426592 + 58426572 58426612 41 GACGACATCCTGATGTCCCACGAGAAGCTGCCGGTGCGCAC GACGACATCCTGATGTCCCACGATAAGCTGCCGGTGCGCAC < 41bp 0.889648143838398 0.608790485120727 0.2843007 0.07370621 prediction 0.561715317435342 Functional Loss - GINS3 ENSG00000181938 CDS Human protein_coding chr16:58426592 chr16:58426595 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_57738 0 0 1 0 1 GINS3 chr16:58426691 5'GT 58426691 Upstream 97bp
chr14 74008278 74008278 1 + G T COAD 74008275 + 74008255 74008295 41 GTATCGGGCTAGTCTGCTGGCTGGGAAGGGTTTTGCTGTGA GTATCGGGCTAGTCTGCTGGCTGTGAAGGGTTTTGCTGTGA < 41bp 0.899130205352197 0.618274159752344 0.2665457 0.11572167 prediction 0.561712091199707 Functional Loss - ACOT1 ENSG00000184227 CDS Human protein_coding chr14:74008275 chr14:74008278 nonsynonymous SNV 0.576 3 24 hm5C_associated_SNPs_57739 0 0 0 0 1 ACOT1 chr14:74008197 3'AG 74008197 Downstream 82bp
chr2 135810011 135810011 1 + G T UCEC 135810008 + 135809988 135810028 41 CCCTTCCCGCAGCCCGAATCCGAGGTATTTGAGATCACGGA CCCTTCCCGCAGCCCGAATCCGATGTATTTGAGATCACGGA < 41bp 0.780853463753455 0.403261063440682 0.91925263 0.41915315 prediction 0.56170692750691 Functional Loss - RAB3GAP1 ENSG00000115839 CDS Human protein_coding chr2:135810008 chr2:135810011 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_57740 0 0 1 0 2 RAB3GAP1 chr2:135810000 3'AG 135810000 Downstream 12bp
chr2 135810011 135810011 1 + G T UCEC 135810008 + 135809988 135810028 41 CCCTTCCCGCAGCCCGAATCCGAGGTATTTGAGATCACGGA CCCTTCCCGCAGCCCGAATCCGATGTATTTGAGATCACGGA < 41bp 0.780853463753455 0.403261063440682 0.91925263 0.41915315 prediction 0.56170692750691 Functional Loss - RAB3GAP1 ENSG00000115839 CDS Human protein_coding chr2:135810008 chr2:135810011 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_57740 0 0 1 0 2 RAB3GAP1 chr2:135810055 5'GT 135810055 Upstream 45bp
chr17 18670044 18670044 1 + G T UCEC 18670042 + 18670022 18670062 41 TTCAGTATGGGATGTAGACACAGGGAAGTGCCTGAAGACGT TTCAGTATGGGATGTAGACACATGGAAGTGCCTGAAGACGT < 41bp 0.863958353079022 0.583112805796296 0.40689355 0.15889892 prediction 0.561691094565453 Functional Loss - FBXW10 ENSG00000171931 CDS Human protein_coding chr17:18670042 chr17:18670044 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_57741 0 0 0 0 1 FBXW10 chr17:18670027 3'AG 18670027 Downstream 18bp
chr11 70279240 70279240 1 + A T LUAD 70279236 + 70279216 70279256 41 TCCTTCAAGGCAGAGCTGAGCTACAGAGGCCCTGTGAGTGG TCCTTCAAGGCAGAGCTGAGCTACTGAGGCCCTGTGAGTGG < 41bp 0.841958878306541 0.561115167562568 0.5379755 0.1813179 prediction 0.561687421487946 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70279236 chr11:70279240 stopgain 0.063 0 25 hm5C_associated_SNPs_57742 0 0 1 0 1 CTTN chr11:70279207 3'AG 70279207 Downstream 34bp
chr21 48068527 48068527 1 + G T OV 48068524 + 48068504 48068544 41 CTGTGCACACTATGCGCGGCCTAGAGCGGTGAGTGGGGTCT CTGTGCACACTATGCGCGGCCTATAGCGGTGAGTGGGGTCT < 41bp 0.780837911160838 0.409004113886156 0.11533803 0.18928903 prediction 0.561675822321677 Functional Loss - PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48068524 chr21:48068527 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_57744 0 0 1 0 1 PRMT2 chr21:48068531 5'GT 48068531 Upstream 5bp
chr10 51556791 51556791 1 + G T UCEC 51556788 + 51556768 51556808 41 GGAAACAAACACCCAATAAACTCGGAGTGGCAGACTGACAA GGAAACAAACACCCAATAAACTCTGAGTGGCAGACTGACAA < 41bp 0.78083678440244 0.430354158979829 0.34293717 0.18712485 prediction 0.56167356880488 Functional Loss - MSMB ENSG00000138294 CDS Human other chr10:51556788 chr10:51556791 synonymous SNV . 0 24 hm5C_associated_SNPs_57745 0 0 0 0 2 MSMB chr10:51556751 3'AG 51556751 Downstream 41bp
chr10 51556791 51556791 1 + G T UCEC 51556788 + 51556768 51556808 41 GGAAACAAACACCCAATAAACTCGGAGTGGCAGACTGACAA GGAAACAAACACCCAATAAACTCTGAGTGGCAGACTGACAA < 41bp 0.78083678440244 0.430354158979829 0.34293717 0.18712485 prediction 0.56167356880488 Functional Loss - MSMB ENSG00000138294 CDS Human other chr10:51556788 chr10:51556791 synonymous SNV . 0 24 hm5C_associated_SNPs_57745 0 0 0 0 2 MSMB chr10:51556856 5'GT 51556856 Upstream 66bp
chr13 111995235 111995235 1 + A T LUSC 111995231 + 111995211 111995251 41 GAAGCCTGCGAGTCCTGGGCCTCCAAGTGCTGGGCCCTCGA GAAGCCTGCGAGTCCTGGGCCTCCTAGTGCTGGGCCCTCGA < 41bp 0.780828721525698 0.451646974500985 0.95520365 0.1085456 prediction 0.561657443051396 Functional Loss - TEX29 ENSG00000153495 CDS Human protein_coding chr13:111995231 chr13:111995235 synonymous SNV . 0 25 hm5C_associated_SNPs_57746 0 0 0 0 1 TEX29 chr13:111995278 5'GT 111995278 Upstream 44bp
chr8 30614366 30614366 1 + G T UCEC 30614364 + 30614344 30614384 41 GAACTTGCCTAAACCTTTAACTGAATTTCCGTCTCCTGCTG GAACTTGCCTAAACCTTTAACTTAATTTCCGTCTCCTGCTG < 41bp 0.780808673049171 0.477896628662125 0.17299592 0.13771632 prediction 0.561617346098342 Functional Loss - UBXN8 ENSG00000104691 ncRNA_exonic Human protein_coding chr8:30614364 chr8:30614366 . 0.001 0 23 hm5C_associated_SNPs_57750 0 0 1 1 1 UBXN8 chr8:30614404 5'GT 30614404 Upstream 39bp
chr6 43039978 43039978 1 + G T rs57512910 43039976 + 43039956 43039996 41 AGACCCTGGAGGAATGTGCCCTGCGGTCCCGGAGACAGGTC AGACCCTGGAGGAATGTGCCCTTCGGTCCCGGAGACAGGTC < 41bp 0.780793010145357 0.447189314817201 0.14669523 0.059805065 prediction 0.561586020290713 Functional Loss - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43039976 chr6:43039978 synonymous SNV . 0 23 hm5C_associated_SNPs_57751 0 0 1 0 2 KLC4 chr6:43039885 3'AG 43039885 Downstream 94bp
chr6 43039978 43039978 1 + G T rs57512910 43039976 + 43039956 43039996 41 AGACCCTGGAGGAATGTGCCCTGCGGTCCCGGAGACAGGTC AGACCCTGGAGGAATGTGCCCTTCGGTCCCGGAGACAGGTC < 41bp 0.780793010145357 0.447189314817201 0.14669523 0.059805065 prediction 0.561586020290713 Functional Loss - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43039976 chr6:43039978 synonymous SNV . 0 23 hm5C_associated_SNPs_57751 0 0 1 0 2 KLC4 chr6:43039993 5'GT 43039993 Upstream 16bp
chr16 55517047 55517047 1 + G T LUAD 55517045 + 55517025 55517065 41 GACAAGAACCAGATCACATACAGGTGCCGGGGCAGGGCTTG GACAAGAACCAGATCACATACATGTGCCGGGGCAGGGCTTG < 41bp 0.780765239412776 0.433730238728074 0.36857343 0.115725994 prediction 0.561530478825552 Functional Loss - MMP2 ENSG00000087245 CDS Human protein_coding chr16:55517045 chr16:55517047 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_57755 0 0 0 0 1 MMP2 chr16:55517047 5'GT 55517047 Upstream 1bp
chr4 166996084 166996084 1 + C T COAD 166996082 + 166996062 166996102 41 TGTCAGCACGAATGTGTCAACACGATGGGGAGCTACATGTG TGTCAGCACGAATGTGTCAACATGATGGGGAGCTACATGTG < 41bp 0.782718830388054 0.501971894484775 0.30607843 0.26926744 prediction 0.561493871806559 Functional Loss - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166996082 chr4:166996084 nonsynonymous SNV 0.835 4 23 hm5C_associated_SNPs_57757 0 0 1 0 2 TLL1 chr4:166996030 3'AG 166996030 Downstream 55bp
chr4 166996084 166996084 1 + C T COAD 166996082 + 166996062 166996102 41 TGTCAGCACGAATGTGTCAACACGATGGGGAGCTACATGTG TGTCAGCACGAATGTGTCAACATGATGGGGAGCTACATGTG < 41bp 0.782718830388054 0.501971894484775 0.30607843 0.26926744 prediction 0.561493871806559 Functional Loss - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166996082 chr4:166996084 nonsynonymous SNV 0.835 4 23 hm5C_associated_SNPs_57757 0 0 1 0 2 TLL1 chr4:166996155 5'GT 166996155 Upstream 72bp
chr1 1387814 1387814 1 + G T LUAD 1387811 + 1387791 1387831 41 GACCGGGACAAAGTGACAGCCACGGTAAACATACTCATAAA GACCGGGACAAAGTGACAGCCACTGTAAACATACTCATAAA < 41bp 0.780716017438747 0.400327237007636 0.7992524 0.20363885 prediction 0.561432034877495 Functional Loss - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1387811 chr1:1387814 synonymous SNV . 0 24 hm5C_associated_SNPs_57761 0 0 1 0 2 ATAD3C chr1:1387745 3'AG 1387745 Downstream 70bp
chr1 1387814 1387814 1 + G T LUAD 1387811 + 1387791 1387831 41 GACCGGGACAAAGTGACAGCCACGGTAAACATACTCATAAA GACCGGGACAAAGTGACAGCCACTGTAAACATACTCATAAA < 41bp 0.780716017438747 0.400327237007636 0.7992524 0.20363885 prediction 0.561432034877495 Functional Loss - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1387811 chr1:1387814 synonymous SNV . 0 24 hm5C_associated_SNPs_57761 0 0 1 0 2 ATAD3C chr1:1387814 5'GT 1387814 Upstream 1bp
chr16 30976009 30976009 1 + G T SKCM 30976007 + 30975987 30976027 41 CTTTTCCCGCCGCCACTTCTCTGCATCTTCAGCCTCCACAA CTTTTCCCGCCGCCACTTCTCTTCATCTTCAGCCTCCACAA < 41bp 0.859161373067545 0.578459523077638 0.2612161 0.08790663 prediction 0.561403699979812 Functional Loss - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30976007 chr16:30976009 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_57762 0 0 1 0 1 SETD1A chr16:30975933 3'AG 30975933 Downstream 77bp
chr21 35757939 35757939 1 + G T BLCA 35757937 + 35757917 35757957 41 CAATCAGAGAAAAAAGATAACTGAAGGTGAGTCCACAGTAC CAATCAGAGAAAAAAGATAACTTAAGGTGAGTCCACAGTAC < 41bp 0.817079874207324 0.536408287093251 0.16447046 0.1654191 prediction 0.561343174228145 Functional Loss - SMIM11A;SMIM11B ENSG00000205670 CDS Human protein_coding chr21:35757937 chr21:35757939 stoploss 0.242 0 23 hm5C_associated_SNPs_57764 0 0 0 0 1 SMIM11A;SMIM11B chr21:35757942 5'GT 35757942 Upstream 4bp
chr19 55086049 55086049 1 + G T HNSC 55086047 + 55086027 55086067 41 CCCCCTGGAGCTGGTGGTGACAGGTGAGAGGACACTCAGGA CCCCCTGGAGCTGGTGGTGACATGTGAGAGGACACTCAGGA < 41bp 0.780664656004318 0.434119432885021 0.49850273 0.24171895 prediction 0.561329312008635 Functional Loss - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55086047 chr19:55086049 stopgain 0.010 0 23 hm5C_associated_SNPs_57767 0 0 0 0 1 LILRA2 chr19:55086049 5'GT 55086049 Upstream 1bp
chr7 141429392 141429392 1 + G T LIHC 141429390 + 141429370 141429410 41 ATATACCCATCATGGTGACACTGGGGTCTCTGGGACCCACA ATATACCCATCATGGTGACACTTGGGTCTCTGGGACCCACA < 41bp 0.865609917707669 0.584950075711732 0.2193709 0.10359672 prediction 0.561319683991873 Functional Loss - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141429390 chr7:141429392 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_57768 0 0 0 0 2 WEE2 chr7:141429331 3'AG 141429331 Downstream 62bp
chr7 141429392 141429392 1 + G T LIHC 141429390 + 141429370 141429410 41 ATATACCCATCATGGTGACACTGGGGTCTCTGGGACCCACA ATATACCCATCATGGTGACACTTGGGTCTCTGGGACCCACA < 41bp 0.865609917707669 0.584950075711732 0.2193709 0.10359672 prediction 0.561319683991873 Functional Loss - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141429390 chr7:141429392 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_57768 0 0 0 0 2 WEE2 chr7:141429473 5'GT 141429473 Upstream 82bp
chr8 21777226 21777226 1 + G T rs543608753 21777223 + 21777203 21777243 41 CGGCGGCGGCGGCAGCGGCTCCGGCCGAGGTGCGCGCTGGG CGGCGGCGGCGGCAGCGGCTCCGTCCGAGGTGCGCGCTGGG < 41bp 0.780642408204252 0.462188482689245 0.85811937 0.36223584 prediction 0.561284816408504 Functional Loss - XPO7 ENSG00000130227 UTR5 Human protein_coding chr8:21777223 chr8:21777226 . . 0 24 hm5C_associated_SNPs_57772 0 0 1 0 1 XPO7 chr8:21777299 5'GT 21777299 Upstream 74bp
chr11 6281226 6281226 1 + G C KIRP 6281225 + 6281205 6281245 41 GGCCGGGGGCTTCCCTGTGCCGCCCGGGGGCGCCTCTCCTC GGCCGGGGGCTTCCCTGTGCCCCCCGGGGGCGCCTCTCCTC < 41bp 0.812084197418362 0.531446601538755 0.049447834 0.019551873 prediction 0.561275191759214 Functional Loss - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6281225 chr11:6281226 nonsynonymous SNV 0.902 2 22 hm5C_associated_SNPs_57773 0 0 0 0 1 CCKBR chr11:6281309 5'GT 6281309 Upstream 84bp
chr4 25675970 25675970 1 + G T LUSC 25675967 + 25675947 25675987 41 GGCTACCTGGCCATCCTCGTCGGGGCAGGCATGACCTTCAT GGCTACCTGGCCATCCTCGTCGGTGCAGGCATGACCTTCAT < 41bp 0.91038940552693 0.629754648502615 0.8978298 0.44589293 prediction 0.561269514048629 Functional Loss - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25675967 chr4:25675970 synonymous SNV . 0 24 hm5C_associated_SNPs_57774 0 0 0 0 2 SLC34A2 chr4:25675918 3'AG 25675918 Downstream 53bp
chr4 25675970 25675970 1 + G T LUSC 25675967 + 25675947 25675987 41 GGCTACCTGGCCATCCTCGTCGGGGCAGGCATGACCTTCAT GGCTACCTGGCCATCCTCGTCGGTGCAGGCATGACCTTCAT < 41bp 0.91038940552693 0.629754648502615 0.8978298 0.44589293 prediction 0.561269514048629 Functional Loss - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25675967 chr4:25675970 synonymous SNV . 0 24 hm5C_associated_SNPs_57774 0 0 0 0 2 SLC34A2 chr4:25676034 5'GT 25676034 Upstream 65bp
chr19 58697164 58697164 1 + G T LGG 58697162 + 58697142 58697182 41 CTCAAACAGAAGTCCCTGTACAGGGAAGTGATGCTGGAGAA CTCAAACAGAAGTCCCTGTACATGGAAGTGATGCTGGAGAA < 41bp 0.816019391758509 0.535389148886847 0.81262934 0.18827325 prediction 0.561260485743325 Functional Loss - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58697162 chr19:58697164 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_57776 0 0 1 2 2 ZNF274 chr19:58697079 3'AG 58697079 Downstream 86bp
chr19 58697164 58697164 1 + G T LGG 58697162 + 58697142 58697182 41 CTCAAACAGAAGTCCCTGTACAGGGAAGTGATGCTGGAGAA CTCAAACAGAAGTCCCTGTACATGGAAGTGATGCTGGAGAA < 41bp 0.816019391758509 0.535389148886847 0.81262934 0.18827325 prediction 0.561260485743325 Functional Loss - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58697162 chr19:58697164 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_57776 0 0 1 2 2 ZNF274 chr19:58697205 5'GT 58697205 Upstream 42bp
chr15 45556917 45556917 1 + G T UCEC 45556915 + 45556895 45556935 41 GTCTTTGGGATCTTGGTCATCAGAACTGATCTTGGATATAC GTCTTTGGGATCTTGGTCATCATAACTGATCTTGGATATAC < 41bp 0.780625013106615 0.446076980690929 0.51373655 0.20271155 prediction 0.56125002621323 Functional Loss - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45556915 chr15:45556917 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_57778 0 0 0 0 2 SLC28A2 chr15:45556853 3'AG 45556853 Downstream 65bp
chr15 45556917 45556917 1 + G T UCEC 45556915 + 45556895 45556935 41 GTCTTTGGGATCTTGGTCATCAGAACTGATCTTGGATATAC GTCTTTGGGATCTTGGTCATCATAACTGATCTTGGATATAC < 41bp 0.780625013106615 0.446076980690929 0.51373655 0.20271155 prediction 0.56125002621323 Functional Loss - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45556915 chr15:45556917 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_57778 0 0 0 0 2 SLC28A2 chr15:45556966 5'GT 45556966 Upstream 50bp
chr4 184129152 184129152 1 + G T COAD 184129150 + 184129130 184129170 41 GAAAACAATGGAGGGGGGAACAGGAGAAGATGCTCAAGGAC GAAAACAATGGAGGGGGGAACATGAGAAGATGCTCAAGGAC < 41bp 0.827675461122386 0.54706094095666 0.91243774 0.89053845 prediction 0.561229040331452 Functional Loss - WWC2 ENSG00000151718 CDS Human protein_coding chr4:184129150 chr4:184129152 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_57783 0 0 1 0 1 WWC2 chr4:184129106 3'AG 184129106 Downstream 47bp
chr11 66272210 66272210 1 + G T SARC 66272207 + 66272187 66272227 41 GGTGCTGCTGCGTAAGGAATCTCGGAAGCTCATTGTTCAGC GGTGCTGCTGCGTAAGGAATCTCTGAAGCTCATTGTTCAGC < 41bp 0.780609365975971 0.401957718460778 0.8408183 0.42664653 prediction 0.561218731951941 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66272207 chr11:66272210 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_57785 0 0 0 0 1 DPP3 chr11:66272245 5'GT 66272245 Upstream 36bp
chrX 79282366 79282366 1 + A C LUSC 79282362 + 79282342 79282382 41 CAGTAACGGCTTACCAAAACCAACAGGTAAACTTGGTCATG CAGTAACGGCTTACCAAAACCAACCGGTAAACTTGGTCATG < 41bp 0.780598585002464 0.369729094924168 0.48519698 0.38500276 prediction 0.561197170004927 Functional Loss - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79282362 chrX:79282366 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_57788 0 0 0 0 1 TBX22 chrX:79282367 5'GT 79282367 Upstream 2bp
chrX 138633377 138633377 1 + G T LUAD 138633374 + 138633354 138633394 41 CCAATCATTTAATGACTTCACTCGGGTTGTTGGTGGAGAAG CCAATCATTTAATGACTTCACTCTGGTTGTTGGTGGAGAAG < 41bp 0.780584234096128 0.412001447934761 0.07845795 0.110987455 prediction 0.561168468192256 Functional Loss - F9 ENSG00000101981 CDS Human protein_coding chrX:138633374 chrX:138633377 nonsynonymous SNV 0.862 3 24 hm5C_associated_SNPs_57792 0 0 0 0 1 F9 chrX:138633423 5'GT 138633423 Upstream 47bp
chr3 151075076 151075076 1 + G T UCEC 151075074 + 151075054 151075094 41 CCTGGCAGGAAGTTATACAACAGGACTGTGTGTCTGCATCG CCTGGCAGGAAGTTATACAACATGACTGTGTGTCTGCATCG < 41bp 0.780571195974469 0.464583210927219 0.3318944 0.027071714 prediction 0.561142391948939 Functional Loss - MED12L ENSG00000144893 CDS Human protein_coding chr3:151075074 chr3:151075076 stopgain 0.999 1 23 hm5C_associated_SNPs_57795 0 0 1 0 1 MED12L chr3:151075001 3'AG 151075001 Downstream 76bp
chr5 126734484 126734484 1 + G T LUSC 126734482 + 126734462 126734502 41 GAATGCTCTTGCCCTTCTGGCTGGATGGTAAGCTTCCTTCC GAATGCTCTTGCCCTTCTGGCTTGATGGTAAGCTTCCTTCC < 41bp 0.84524457124577 0.564678650121976 0.5483894 0.10221094 prediction 0.561131842247587 Functional Loss - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126734482 chr5:126734484 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_57796 0 0 0 0 1 MEGF10 chr5:126734488 5'GT 126734488 Upstream 5bp
chr19 57742407 57742407 1 + G T rs181127302 57742404 + 57742384 57742424 41 CCTCTCTGAGCGGTTGGTGCCGGGTATAAAAGAAGGCCGCG CCTCTCTGAGCGGTTGGTGCCGGTTATAAAAGAAGGCCGCG < 41bp 0.874062445671519 0.593507511590467 0.8973644 0.43415308 prediction 0.561109868162104 Functional Loss - AURKC ENSG00000105146 UTR5 Human protein_coding chr19:57742404 chr19:57742407 . . 0 24 hm5C_associated_SNPs_57798 0 0 0 0 1 AURKC chr19:57742482 5'GT 57742482 Upstream 76bp
chr14 100996231 100996231 1 + G T LUAD 100996228 + 100996208 100996248 41 GTGACGGGCAGCGCCGATGGCCGGGTCCTGATGTACAGCTT GTGACGGGCAGCGCCGATGGCCGTGTCCTGATGTACAGCTT < 41bp 0.780552060550966 0.40168656901912 0.80660236 0.22067305 prediction 0.561104121101933 Functional Loss - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100996228 chr14:100996231 synonymous SNV . 0 24 hm5C_associated_SNPs_57799 0 0 1 0 1 WDR25 chr14:100996157 3'AG 100996157 Downstream 75bp
chr22 42475909 42475909 1 + G T UCEC 42475906 + 42475886 42475926 41 AGGCCGGAGCCTGGTACCGTCGAGGTCAGTCATCGTTACCC AGGCCGGAGCCTGGTACCGTCGATGTCAGTCATCGTTACCC < 41bp 0.899340056413697 0.618805152401221 0.8606509 0.3997018 prediction 0.561069808024953 Functional Loss - SMDT1 ENSG00000183172 CDS Human protein_coding chr22:42475906 chr22:42475909 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_57806 0 0 1 0 1 SMDT1 chr22:42475958 5'GT 42475958 Upstream 50bp
chr3 37988645 37988645 1 + A C LIHC 37988641 + 37988621 37988661 41 TGATTACAATGTGGAGGCCCCTCCACCCAGCAGCCCCAGTG TGATTACAATGTGGAGGCCCCTCCCCCCAGCAGCCCCAGTG < 41bp 0.780534545643123 0.352034655505556 0.90205526 0.3134536 prediction 0.561069091286245 Functional Loss - CTDSPL ENSG00000144677 CDS Human protein_coding chr3:37988641 chr3:37988645 synonymous SNV . 0 25 hm5C_associated_SNPs_57807 0 0 1 0 2 CTDSPL chr3:37988548 3'AG 37988548 Downstream 98bp
chr3 37988645 37988645 1 + A C LIHC 37988641 + 37988621 37988661 41 TGATTACAATGTGGAGGCCCCTCCACCCAGCAGCCCCAGTG TGATTACAATGTGGAGGCCCCTCCCCCCAGCAGCCCCAGTG < 41bp 0.780534545643123 0.352034655505556 0.90205526 0.3134536 prediction 0.561069091286245 Functional Loss - CTDSPL ENSG00000144677 CDS Human protein_coding chr3:37988641 chr3:37988645 synonymous SNV . 0 25 hm5C_associated_SNPs_57807 0 0 1 0 2 CTDSPL chr3:37988702 5'GT 37988702 Upstream 58bp
chr20 3893223 3893223 1 + G T UCEC 3893220 + 3893200 3893240 41 CCAAAGTGGATAAACTAGTACGAGATATTTATGGAGGGGAC CCAAAGTGGATAAACTAGTACGATATATTTATGGAGGGGAC < 41bp 0.780530741239871 0.400484072105834 0.8921528 0.40907645 prediction 0.561061482479742 Functional Loss - PANK2 ENSG00000125779 CDS Human protein_coding chr20:3893220 chr20:3893223 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_57809 0 0 1 1 1 PANK2 chr20:3893281 5'GT 3893281 Upstream 59bp
chr19 41599621 41599621 1 + G T GBM 41599618 + 41599598 41599638 41 TTCTTTGCGGGCACTGAGACCGTGAGCACCACCCTGCGCTA TTCTTTGCGGGCACTGAGACCGTTAGCACCACCCTGCGCTA < 41bp 0.780526113088271 0.397379671526116 0.4219028 0.1327197 prediction 0.561052226176541 Functional Loss - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41599618 chr19:41599621 synonymous SNV . 0 24 hm5C_associated_SNPs_57810 0 0 0 0 1 CYP2A13 chr19:41599535 3'AG 41599535 Downstream 87bp
chr10 50182984 50182984 1 + G T UCEC 50182982 + 50182962 50183002 41 GCCTCCTGGTGAGCGGCTCCCAGGACTGCACCTGTATCCTG GCCTCCTGGTGAGCGGCTCCCATGACTGCACCTGTATCCTG < 41bp 0.780522622264216 0.468585102372033 0.8716015 0.12648812 prediction 0.561045244528432 Functional Loss - WDFY4 ENSG00000128815 CDS Human protein_coding chr10:50182982 chr10:50182984 nonsynonymous SNV 0.604 1 23 hm5C_associated_SNPs_57811 0 0 0 0 1 WDFY4 chr10:50182907 3'AG 50182907 Downstream 78bp
chr3 25502752 25502752 1 + C T UCEC 25502750 + 25502730 25502770 41 CCCATCTCCACTTCCTCCCCCTCGAGTGTACAAACCCTGCT CCCATCTCCACTTCCTCCCCCTTGAGTGTACAAACCCTGCT < 41bp 0.787056129025747 0.506537109618463 0.019450873 0.009957224 prediction 0.561038038814568 Functional Loss - RARB ENSG00000077092 CDS Human protein_coding chr3:25502750 chr3:25502752 stopgain 0.998 1 23 hm5C_associated_SNPs_57812 0 0 1 0 2 RARB chr3:25502684 3'AG 25502684 Downstream 69bp
chr3 25502752 25502752 1 + C T UCEC 25502750 + 25502730 25502770 41 CCCATCTCCACTTCCTCCCCCTCGAGTGTACAAACCCTGCT CCCATCTCCACTTCCTCCCCCTTGAGTGTACAAACCCTGCT < 41bp 0.787056129025747 0.506537109618463 0.019450873 0.009957224 prediction 0.561038038814568 Functional Loss - RARB ENSG00000077092 CDS Human protein_coding chr3:25502750 chr3:25502752 stopgain 0.998 1 23 hm5C_associated_SNPs_57812 0 0 1 0 2 RARB chr3:25502832 5'GT 25502832 Upstream 81bp
chr4 5458590 5458590 1 + G T UCEC 5458587 + 5458567 5458607 41 GATGAAATCCTCAACATGTTCAAGGTGGAGCGTGTCCACTA GATGAAATCCTCAACATGTTCAATGTGGAGCGTGTCCACTA < 41bp 0.880007899238698 0.599491264860978 0.75703263 0.18069577 prediction 0.561033268755438 Functional Loss - STK32B ENSG00000152953 CDS Human protein_coding chr4:5458587 chr4:5458590 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_57813 0 0 0 0 2 STK32B chr4:5458534 3'AG 5458534 Downstream 57bp
chr4 5458590 5458590 1 + G T UCEC 5458587 + 5458567 5458607 41 GATGAAATCCTCAACATGTTCAAGGTGGAGCGTGTCCACTA GATGAAATCCTCAACATGTTCAATGTGGAGCGTGTCCACTA < 41bp 0.880007899238698 0.599491264860978 0.75703263 0.18069577 prediction 0.561033268755438 Functional Loss - STK32B ENSG00000152953 CDS Human protein_coding chr4:5458587 chr4:5458590 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_57813 0 0 0 0 2 STK32B chr4:5458650 5'GT 5458650 Upstream 61bp
chr1 36762298 36762298 1 + C T UCEC 36762296 + 36762276 36762316 41 ATCGAGAGAATCAGTGGATTCCCGAGACTCCAGTCACTCAA ATCGAGAGAATCAGTGGATTCCTGAGACTCCAGTCACTCAA < 41bp 0.789388593225177 0.508872962156496 0.46399903 0.48038447 prediction 0.561031262137362 Functional Loss - THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36762296 chr1:36762298 stopgain 0.999 1 23 hm5C_associated_SNPs_57814 0 0 1 0 1 THRAP3 chr1:36762371 5'GT 36762371 Upstream 74bp
chr2 207436495 207436495 1 + G T LIHC 207436492 + 207436472 207436512 41 AAGAAATGTTCCCTCTCCAACGGGGCTCACTGCAGCGACGG AAGAAATGTTCCCTCTCCAACGGTGCTCACTGCAGCGACGG < 41bp 0.780508504943696 0.391210758753265 0.96778536 0.9434202 prediction 0.561017009887391 Functional Loss - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207436492 chr2:207436495 synonymous SNV . 0 24 hm5C_associated_SNPs_57816 0 0 1 0 2 ADAM23 chr2:207436451 3'AG 207436451 Downstream 45bp
chr2 207436495 207436495 1 + G T LIHC 207436492 + 207436472 207436512 41 AAGAAATGTTCCCTCTCCAACGGGGCTCACTGCAGCGACGG AAGAAATGTTCCCTCTCCAACGGTGCTCACTGCAGCGACGG < 41bp 0.780508504943696 0.391210758753265 0.96778536 0.9434202 prediction 0.561017009887391 Functional Loss - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207436492 chr2:207436495 synonymous SNV . 0 24 hm5C_associated_SNPs_57816 0 0 1 0 2 ADAM23 chr2:207436540 5'GT 207436540 Upstream 46bp
chr3 119242511 119242511 1 + G T OV 119242508 + 119242488 119242528 41 AGAAAATTGAAAGTAGTTTACAGGAAGATGAACCTGAGAAT AGAAAATTGAAAGTAGTTTACAGTAAGATGAACCTGAGAAT < 41bp 0.882218235009191 0.60171412319537 0.683679 0.10395789 prediction 0.561008223627643 Functional Loss - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119242508 chr3:119242511 stopgain 0.077 0 24 hm5C_associated_SNPs_57817 0 0 1 1 1 TIMMDC1 chr3:119242453 3'AG 119242453 Downstream 59bp
chr22 46688752 46688752 1 + A C LUSC 46688748 + 46688728 46688768 41 CCCCTGACCGAGCGGCTCATCCGCAAGGCAGCTACCGTCCA CCCCTGACCGAGCGGCTCATCCGCCAGGCAGCTACCGTCCA < 41bp 0.780499088304975 0.376481190853449 0.15306523 0.16240838 prediction 0.560998176609949 Functional Loss - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46688748 chr22:46688752 nonsynonymous SNV 0.894 3 25 hm5C_associated_SNPs_57818 0 0 0 0 1 TTC38 chr22:46688688 3'AG 46688688 Downstream 65bp
chr7 128454720 128454720 1 + A T LUSC 128454716 + 128454696 128454736 41 AAGAACTGCAGACCAAGCTGCGGGAGCTGCAGCTGCAATAC AAGAACTGCAGACCAAGCTGCGGGTGCTGCAGCTGCAATAC < 41bp 0.830113713384628 0.54961831162433 0.9104193 0.89649796 prediction 0.560990803520596 Functional Loss - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128454716 chr7:128454720 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_57819 0 0 0 0 1 CCDC136 chr7:128454692 3'AG 128454692 Downstream 29bp
chr7 140374007 140374007 1 + G T SARC 140374004 + 140373984 140374024 41 GATCAAATGCAGGGGTGTCTCGGGCTCAGGTCCCTGGCCAC GATCAAATGCAGGGGTGTCTCGGTCTCAGGTCCCTGGCCAC < 41bp 0.902635097183667 0.622144928576846 0.9335551 0.7363196 prediction 0.560980337213642 Functional Loss - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140374004 chr7:140374007 nonsynonymous SNV 0.036 0 24 hm5C_associated_SNPs_57820 0 0 1 0 1 ADCK2 chr7:140374063 5'GT 140374063 Upstream 57bp
chr1 209778933 209778933 1 + G T UCEC 209778931 + 209778911 209778951 41 CCTGGAGCGGGGTGTCTACACAGAGAAGGATGCCAGTCTGG CCTGGAGCGGGGTGTCTACACATAGAAGGATGCCAGTCTGG < 41bp 0.874073184245761 0.593585205995046 0.6888939 0.14903101 prediction 0.56097595650143 Functional Loss - CAMK1G ENSG00000008118 CDS Human protein_coding chr1:209778931 chr1:209778933 stopgain 1.000 1 23 hm5C_associated_SNPs_57821 0 0 0 0 1 CAMK1G chr1:209779019 5'GT 209779019 Upstream 87bp
chr8 87543407 87543407 1 + C T UCEC 87543405 + 87543385 87543425 41 TGTTTCCAGCAAGAAGCTAACTCGACCACTGGTGATGAAAA TGTTTCCAGCAAGAAGCTAACTTGACCACTGGTGATGAAAA < 41bp 0.787599888239296 0.507122029591698 0.090634674 0.123218805 prediction 0.560955717295196 Functional Loss - CPNE3 ENSG00000085719 CDS Human protein_coding chr8:87543405 chr8:87543407 stopgain 1.000 1 23 hm5C_associated_SNPs_57823 0 0 1 0 2 CPNE3 chr8:87543383 3'AG 87543383 Downstream 25bp
chr8 87543407 87543407 1 + C T UCEC 87543405 + 87543385 87543425 41 TGTTTCCAGCAAGAAGCTAACTCGACCACTGGTGATGAAAA TGTTTCCAGCAAGAAGCTAACTTGACCACTGGTGATGAAAA < 41bp 0.787599888239296 0.507122029591698 0.090634674 0.123218805 prediction 0.560955717295196 Functional Loss - CPNE3 ENSG00000085719 CDS Human protein_coding chr8:87543405 chr8:87543407 stopgain 1.000 1 23 hm5C_associated_SNPs_57823 0 0 1 0 2 CPNE3 chr8:87543457 5'GT 87543457 Upstream 51bp
chr19 49671848 49671848 1 + G T LUAD 49671846 + 49671826 49671866 41 GGTACCGGTGGCGCGGTGACCCGGAGGACGGGGTCCAGTTT GGTACCGGTGGCGCGGTGACCCTGAGGACGGGGTCCAGTTT < 41bp 0.869667236977821 0.589190483707776 0.9306898 0.23402882 prediction 0.56095350654009 Functional Loss - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49671846 chr19:49671848 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_57824 0 0 1 0 1 TRPM4 chr19:49671810 3'AG 49671810 Downstream 39bp
chrX 40595037 40595037 1 - C G rs112389934 40595038 - 40595018 40595058 41 GAGAACAGACACAGACCTGTCGGAAGGTCCTCTGCAGGTCC GAGAACAGACACAGACCTGTCCGAAGGTCCTCTGCAGGTCC < 41bp 0.796120701052683 0.515658314232381 0.7119185 0.29586506 prediction 0.560924773640604 Functional Loss - MED14OS ENSG00000234636 ncRNA_exonic Human antisense chrX:40595038 chrX:40595037 . . 0 22 hm5C_associated_SNPs_57825 0 0 0 0 1 MED14OS chrX:40594974 5'GT 40594974 Upstream 64bp
chr14 21464391 21464391 1 + C T LUSC 21464389 + 21464369 21464409 41 GTCCCCATGAACTCCCTTGTCCCCAGTTGACCAACCTGGCC GTCCCCATGAACTCCCTTGTCCTCAGTTGACCAACCTGGCC < 41bp 0.780550567582248 0.500089564384308 0.13005838 0.1688075 prediction 0.56092200639588 Functional Loss - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21464389 chr14:21464391 synonymous SNV . 0 23 hm5C_associated_SNPs_57826 0 0 1 0 1 METTL17 chr14:21464451 5'GT 21464451 Upstream 61bp
chr17 21217491 21217491 1 + G T rs201112044 21217488 + 21217468 21217508 41 TTCTTCACCTTGCACAAAACCAAGAAGACGGACATTGCTGC TTCTTCACCTTGCACAAAACCAATAAGACGGACATTGCTGC < 41bp 0.780459073086004 0.408367089097044 0.31664875 0.3047629 prediction 0.560918146172008 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21217488 chr17:21217491 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_57827 0 0 1 0 1 MAP2K3 chr17:21217459 3'AG 21217459 Downstream 33bp
chrX 135288623 135288623 1 + G T LUAD 135288621 + 135288601 135288641 41 AAGTTTGACTGCCACTACTGCAGGGATCCCTTGCAGGGGAA AAGTTTGACTGCCACTACTGCATGGATCCCTTGCAGGGGAA < 41bp 0.780458571065188 0.451089425644562 0.90349466 0.36268318 prediction 0.560917142130376 Functional Loss - FHL1 ENSG00000022267 CDS Human protein_coding chrX:135288621 chrX:135288623 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_57828 0 0 1 0 2 FHL1 chrX:135288566 3'AG 135288566 Downstream 58bp
chrX 135288623 135288623 1 + G T LUAD 135288621 + 135288601 135288641 41 AAGTTTGACTGCCACTACTGCAGGGATCCCTTGCAGGGGAA AAGTTTGACTGCCACTACTGCATGGATCCCTTGCAGGGGAA < 41bp 0.780458571065188 0.451089425644562 0.90349466 0.36268318 prediction 0.560917142130376 Functional Loss - FHL1 ENSG00000022267 CDS Human protein_coding chrX:135288621 chrX:135288623 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_57828 0 0 1 0 2 FHL1 chrX:135288692 5'GT 135288692 Upstream 70bp
chr18 28966761 28966761 1 + G C SKCM 28966760 + 28966740 28966780 41 TCGAGAAGGAGAGGACAACTCGAAGAGGAACCCCATTGCCA TCGAGAAGGAGAGGACAACTCCAAGAGGAACCCCATTGCCA < 41bp 0.81731554119667 0.536868027965868 0.89489555 0.86852014 prediction 0.560895026461604 Functional Loss - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28966760 chr18:28966761 synonymous SNV . 0 22 hm5C_associated_SNPs_57829 0 0 0 0 1 DSG4 chr18:28966782 5'GT 28966782 Upstream 22bp
chr7 48081011 48081011 1 + A C rs528667180 48081007 + 48080987 48081027 41 GCGTCCCAGATCCCAGGTCTCAGCAATTTGGGAGACTCACA GCGTCCCAGATCCCAGGTCTCAGCCATTTGGGAGACTCACA < 41bp 0.913660372132295 0.633214990712233 0.8989713 0.8262118 prediction 0.560890762840123 Functional Loss - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48081007 chr7:48081011 nonsynonymous SNV 0.044 1 25 hm5C_associated_SNPs_57830 0 0 0 0 1 C7orf57 chr7:48080931 3'AG 48080931 Downstream 81bp
chr11 64795066 64795066 1 + G T LUAD 64795063 + 64795043 64795083 41 CACTACACAGTGTCGGACCCCAGGACTCACCCCAAGGGCTA CACTACACAGTGTCGGACCCCAGTACTCACCCCAAGGGCTA < 41bp 0.895980347003243 0.615541999765858 0.2984445 0.18394923 prediction 0.560876694474772 Functional Loss - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64795063 chr11:64795066 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_57832 0 0 1 0 1 SNX15 chr11:64795108 5'GT 64795108 Upstream 43bp
chr1 203013186 203013186 1 + A C STAD 203013182 + 203013162 203013202 41 AGGTGGAGGTGCTGAAGGCCCTCAAGTCACTGTTTGAGCAC AGGTGGAGGTGCTGAAGGCCCTCACGTCACTGTTTGAGCAC < 41bp 0.780437318611332 0.36560814999931 0.21913797 0.13705453 prediction 0.560874637222665 Functional Loss - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203013182 chr1:203013186 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_57833 0 0 0 0 1 PPFIA4 chr1:203013223 5'GT 203013223 Upstream 38bp
chr12 82870468 82870468 1 + C T SKCM 82870466 + 82870446 82870486 41 CTACTACGAGAAGTATAAGCCTCGAATGAATGAGCTGGAAG CTACTACGAGAAGTATAAGCCTTGAATGAATGAGCTGGAAG < 41bp 0.78102200834759 0.500626624402884 0.84251606 0.09001145 prediction 0.560790767889413 Functional Loss - METTL25 ENSG00000127720 CDS Human protein_coding chr12:82870466 chr12:82870468 stopgain 1.000 1 23 hm5C_associated_SNPs_57836 0 0 1 0 2 METTL25 chr12:82870423 3'AG 82870423 Downstream 46bp
chr12 82870468 82870468 1 + C T SKCM 82870466 + 82870446 82870486 41 CTACTACGAGAAGTATAAGCCTCGAATGAATGAGCTGGAAG CTACTACGAGAAGTATAAGCCTTGAATGAATGAGCTGGAAG < 41bp 0.78102200834759 0.500626624402884 0.84251606 0.09001145 prediction 0.560790767889413 Functional Loss - METTL25 ENSG00000127720 CDS Human protein_coding chr12:82870466 chr12:82870468 stopgain 1.000 1 23 hm5C_associated_SNPs_57836 0 0 1 0 2 METTL25 chr12:82870497 5'GT 82870497 Upstream 30bp
chr1 212788549 212788549 1 + G T HNSC 212788547 + 212788527 212788567 41 GCCACCGGATGTCCTCTGCGCTGGAATCAGTCACTGTCAGC GCCACCGGATGTCCTCTGCGCTTGAATCAGTCACTGTCAGC < 41bp 0.857799075235127 0.577412043466409 0.42895412 0.2579612 prediction 0.560774063537435 Functional Loss - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212788547 chr1:212788549 synonymous SNV . 0 23 hm5C_associated_SNPs_57837 0 0 1 2 2 ATF3 chr1:212788490 3'AG 212788490 Downstream 60bp
chr1 212788549 212788549 1 + G T HNSC 212788547 + 212788527 212788567 41 GCCACCGGATGTCCTCTGCGCTGGAATCAGTCACTGTCAGC GCCACCGGATGTCCTCTGCGCTTGAATCAGTCACTGTCAGC < 41bp 0.857799075235127 0.577412043466409 0.42895412 0.2579612 prediction 0.560774063537435 Functional Loss - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212788547 chr1:212788549 synonymous SNV . 0 23 hm5C_associated_SNPs_57837 0 0 1 2 2 ATF3 chr1:212788603 5'GT 212788603 Upstream 55bp
chr12 54428118 54428118 1 + G C CESC 54428117 + 54428097 54428137 41 CGCTACCAGACTCTGGAACTCGAGAAAGAATTCCACTTTAA CGCTACCAGACTCTGGAACTCCAGAAAGAATTCCACTTTAA < 41bp 0.815205969079298 0.534829544578819 0.918218 0.67201215 prediction 0.560752849000958 Functional Loss - HOXC5 ENSG00000172789;ENSG00000273049 CDS Human other chr12:54428117 chr12:54428118 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_57838 0 0 1 0 1 HOXC5 chr12:54428062 3'AG 54428062 Downstream 57bp
chr17 27005167 27005167 1 + A C UCEC 27005163 + 27005143 27005183 41 GGAAAGGGCCCAGCACAATTCAGAAGATCAAAGAGGCCCTG GGAAAGGGCCCAGCACAATTCAGACGATCAAAGAGGCCCTG < 41bp 0.780369264250414 0.405045875347108 0.29103494 0.2598426 prediction 0.560738528500827 Functional Loss - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27005163 chr17:27005167 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_57840 0 0 1 0 2 SUPT6H chr17:27005094 3'AG 27005094 Downstream 74bp
chr17 27005167 27005167 1 + A C UCEC 27005163 + 27005143 27005183 41 GGAAAGGGCCCAGCACAATTCAGAAGATCAAAGAGGCCCTG GGAAAGGGCCCAGCACAATTCAGACGATCAAAGAGGCCCTG < 41bp 0.780369264250414 0.405045875347108 0.29103494 0.2598426 prediction 0.560738528500827 Functional Loss - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27005163 chr17:27005167 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_57840 0 0 1 0 2 SUPT6H chr17:27005210 5'GT 27005210 Upstream 44bp
chr10 134008426 134008426 1 + G T LUSC 134008424 + 134008404 134008444 41 GCGGGAGCGGGCGGACAGCGCGGCCTGCTGCGACTACTCCC GCGGGAGCGGGCGGACAGCGCGTCCTGCTGCGACTACTCCC < 41bp 0.780355871680102 0.434876461781377 0.8260189 0.4920593 prediction 0.560711743360204 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134008424 chr10:134008426 nonsynonymous SNV 0.696 2 23 hm5C_associated_SNPs_57843 0 0 0 0 1 DPYSL4 chr10:134008349 3'AG 134008349 Downstream 78bp
chr22 26771552 26771552 1 + G T LIHC 26771550 + 26771530 26771570 41 CCTGTGTTCAGTAGCAGAAGCGGCAGCAGAGACGTCGCTGG CCTGTGTTCAGTAGCAGAAGCGTCAGCAGAGACGTCGCTGG < 41bp 0.780345460928006 0.452993535601757 0.885159 0.26508415 prediction 0.560690921856012 Functional Loss - SEZ6L ENSG00000100095 CDS Human protein_coding chr22:26771550 chr22:26771552 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_57844 0 0 0 0 3 SEZ6L chr22:26771541 3'AG 26771541 Downstream 12bp
chr22 26771552 26771552 1 + G T LIHC 26771550 + 26771530 26771570 41 CCTGTGTTCAGTAGCAGAAGCGGCAGCAGAGACGTCGCTGG CCTGTGTTCAGTAGCAGAAGCGTCAGCAGAGACGTCGCTGG < 41bp 0.780345460928006 0.452993535601757 0.885159 0.26508415 prediction 0.560690921856012 Functional Loss - SEZ6L ENSG00000100095 CDS Human protein_coding chr22:26771550 chr22:26771552 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_57844 0 0 0 0 3 SEZ6L chr22:26771544 3'AG 26771544 Downstream 9bp
chr22 26771552 26771552 1 + G T LIHC 26771550 + 26771530 26771570 41 CCTGTGTTCAGTAGCAGAAGCGGCAGCAGAGACGTCGCTGG CCTGTGTTCAGTAGCAGAAGCGTCAGCAGAGACGTCGCTGG < 41bp 0.780345460928006 0.452993535601757 0.885159 0.26508415 prediction 0.560690921856012 Functional Loss - SEZ6L ENSG00000100095 CDS Human protein_coding chr22:26771550 chr22:26771552 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_57844 0 0 0 0 3 SEZ6L chr22:26771547 3'AG 26771547 Downstream 6bp
chr19 14139128 14139128 1 + G T UCEC 14139125 + 14139105 14139145 41 ACGGGGTCAGGCTTTGCGGCCGAGAATTCATCCGAGCAGTC ACGGGGTCAGGCTTTGCGGCCGATAATTCATCCGAGCAGTC < 41bp 0.896145500609449 0.615800807372476 0.6981126 0.17684859 prediction 0.560689386473947 Functional Loss - RLN3 ENSG00000171136 CDS Human protein_coding chr19:14139125 chr19:14139128 stopgain 0.793 1 24 hm5C_associated_SNPs_57845 0 0 0 0 1 RLN3 chr19:14139206 5'GT 14139206 Upstream 79bp
chr19 45175887 45175887 1 + G T LUAD 45175884 + 45175864 45175904 41 ACAGCCTCAATCCTGGTCCTCTGGATGCTCCAAGGCTCCCA ACAGCCTCAATCCTGGTCCTCTGTATGCTCCAAGGCTCCCA < 41bp 0.902384411855408 0.622041016860654 0.40037066 0.16200423 prediction 0.560686789989508 Functional Loss - CEACAM19 ENSG00000186567 CDS Human protein_coding chr19:45175884 chr19:45175887 nonsynonymous SNV 0.032 1 24 hm5C_associated_SNPs_57846 0 0 1 0 1 CEACAM19 chr19:45175868 3'AG 45175868 Downstream 20bp
chr9 137777622 137777622 1 + G T ESCA 137777620 + 137777600 137777640 41 TGGCTTCTCCACAGGTTTTCCAGCGGAGGGTGGATGGCTCT TGGCTTCTCCACAGGTTTTCCATCGGAGGGTGGATGGCTCT < 41bp 0.780324610389456 0.437142683388656 0.90865874 0.50079507 prediction 0.560649220778912 Functional Loss - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137777620 chr9:137777622 nonsynonymous SNV 0.451 3 23 hm5C_associated_SNPs_57850 0 0 0 0 1 FCN2 chr9:137777614 3'AG 137777614 Downstream 9bp
chr1 110230504 110230504 1 + G T COAD 110230501 + 110230481 110230521 41 GCACCAACCAGCACCATGCCCATGATACTGGGGTACTGGGA GCACCAACCAGCACCATGCCCATTATACTGGGGTACTGGGA < 41bp 0.780316424883676 0.40723536600381 0.2064122 0.1010288 prediction 0.560632849767351 Functional Loss - GSTM1 ENSG00000134184 CDS Human protein_coding chr1:110230501 chr1:110230504 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_57852 0 0 0 0 1 GSTM1 chr1:110230531 5'GT 110230531 Upstream 28bp
chr16 21611123 21611123 1 + G C KIRC 21611122 + 21611102 21611142 41 GCTGGCGCGGAGGATGTGGACGCTGCGGAGCCCGCTCACCC GCTGGCGCGGAGGATGTGGACCCTGCGGAGCCCGCTCACCC < 41bp 0.803223059501165 0.522920537529806 0.24808535 0.17480177 prediction 0.560605043942716 Functional Loss - METTL9 ENSG00000197006 CDS Human protein_coding chr16:21611122 chr16:21611123 synonymous SNV . 0 22 hm5C_associated_SNPs_57854 0 0 1 0 1 METTL9 chr16:21611219 5'GT 21611219 Upstream 97bp
chr1 22927843 22927843 1 + G T SARC 22927841 + 22927821 22927861 41 TGCTTTGACCTCCGAGGGGGCAGCGGTGGCGGTGGGGGCCT TGCTTTGACCTCCGAGGGGGCATCGGTGGCGGTGGGGGCCT < 41bp 0.780283374888982 0.44332103772823 0.9132745 0.90078795 prediction 0.560566749777965 Functional Loss - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22927841 chr1:22927843 nonsynonymous SNV 0.083 0 23 hm5C_associated_SNPs_57856 0 0 0 0 1 EPHA8 chr1:22927793 3'AG 22927793 Downstream 51bp
chr1 206566223 206566223 1 + A C LIHC 206566219 + 206566199 206566239 41 CGCATTGAGGAGAAACATGTCCGGAGGAGCTCAGTGAAGAA CGCATTGAGGAGAAACATGTCCGGCGGAGCTCAGTGAAGAA < 41bp 0.780270597011178 0.373344695198979 0.744447 0.368293 prediction 0.560541194022357 Functional Loss - SRGAP2 ENSG00000163486 CDS Human other chr1:206566219 chr1:206566223 synonymous SNV . 0 25 hm5C_associated_SNPs_57861 0 0 1 0 1 SRGAP2 chr1:206566261 5'GT 206566261 Upstream 39bp
chr6 151939127 151939127 1 + G C LUSC 151939126 + 151939106 151939146 41 TCGCAGATGCTAGGCTTGAACGTGACCAGCCTTGCTCTTCC TCGCAGATGCTAGGCTTGAACCTGACCAGCCTTGCTCTTCC < 41bp 0.812541693658529 0.532274615475711 0.5316017 0.18992296 prediction 0.560534156365636 Functional Loss - CCDC170 ENSG00000120262 CDS Human protein_coding chr6:151939126 chr6:151939127 nonsynonymous SNV 0.096 0 22 hm5C_associated_SNPs_57862 0 0 0 0 1 CCDC170 chr6:151939082 3'AG 151939082 Downstream 46bp
chr11 7081206 7081206 1 + G T TGCT 7081204 + 7081184 7081224 41 ACAACAAGAGCCTGACGCATCTGGATCTAGGATCAAACTGG ACAACAAGAGCCTGACGCATCTTGATCTAGGATCAAACTGG < 41bp 0.856939272097332 0.576672589940759 0.13462684 0.015708655 prediction 0.560533364313146 Functional Loss - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7081204 chr11:7081206 synonymous SNV . 0 23 hm5C_associated_SNPs_57863 0 0 0 0 2 NLRP14 chr11:7081125 3'AG 7081125 Downstream 82bp
chr11 7081206 7081206 1 + G T TGCT 7081204 + 7081184 7081224 41 ACAACAAGAGCCTGACGCATCTGGATCTAGGATCAAACTGG ACAACAAGAGCCTGACGCATCTTGATCTAGGATCAAACTGG < 41bp 0.856939272097332 0.576672589940759 0.13462684 0.015708655 prediction 0.560533364313146 Functional Loss - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7081204 chr11:7081206 synonymous SNV . 0 23 hm5C_associated_SNPs_57863 0 0 0 0 2 NLRP14 chr11:7081295 5'GT 7081295 Upstream 90bp
chr15 84611431 84611431 1 + G T LUAD 84611428 + 84611408 84611448 41 AGATGTGTACTGCCTGCACCCAGGGGAGACCCCTGCCCCTC AGATGTGTACTGCCTGCACCCAGTGGAGACCCCTGCCCCTC < 41bp 0.897879555864236 0.617628886233155 0.9452744 0.7929679 prediction 0.560501339262163 Functional Loss - ADAMTSL3 ENSG00000156218 CDS Human protein_coding chr15:84611428 chr15:84611431 nonsynonymous SNV 0.143 1 24 hm5C_associated_SNPs_57865 0 0 0 0 1 ADAMTSL3 chr15:84611348 3'AG 84611348 Downstream 84bp
chr1 12918918 12918918 1 + G T LUSC 12918916 + 12918896 12918936 41 AGCTGGCGGGGCAGAGCCTGCTGAGAGACCAGGCCTTGTCC AGCTGGCGGGGCAGAGCCTGCTTAGAGACCAGGCCTTGTCC < 41bp 0.870582380766671 0.590339937982896 0.39477742 0.062678784 prediction 0.56048488556755 Functional Loss - PRAMEF2 ENSG00000120952 CDS Human protein_coding chr1:12918916 chr1:12918918 synonymous SNV . 0 23 hm5C_associated_SNPs_57867 0 0 0 0 1 PRAMEF2 chr1:12918840 3'AG 12918840 Downstream 79bp
chr7 141719073 141719073 1 + G T UCEC 141719070 + 141719050 141719090 41 GTTCCCTGGTGCTACTATTCCAAGAATCATAGCTACCATGT GTTCCCTGGTGCTACTATTCCAATAATCATAGCTACCATGT < 41bp 0.780241856667576 0.407795679463664 0.39603737 0.14601386 prediction 0.560483713335152 Functional Loss - MGAM ENSG00000257335 CDS Human protein_coding chr7:141719070 chr7:141719073 nonsynonymous SNV 0.786 0 24 hm5C_associated_SNPs_57868 0 0 0 0 2 MGAM chr7:141718999 3'AG 141718999 Downstream 75bp
chr7 141719073 141719073 1 + G T UCEC 141719070 + 141719050 141719090 41 GTTCCCTGGTGCTACTATTCCAAGAATCATAGCTACCATGT GTTCCCTGGTGCTACTATTCCAATAATCATAGCTACCATGT < 41bp 0.780241856667576 0.407795679463664 0.39603737 0.14601386 prediction 0.560483713335152 Functional Loss - MGAM ENSG00000257335 CDS Human protein_coding chr7:141719070 chr7:141719073 nonsynonymous SNV 0.786 0 24 hm5C_associated_SNPs_57868 0 0 0 0 2 MGAM chr7:141719119 5'GT 141719119 Upstream 47bp
chr5 132412504 132412504 1 + G T UCEC 132412501 + 132412481 132412521 41 TCTCAGGAGTGTGAGAAACTCAAGAAATTGATGAGTGCAAA TCTCAGGAGTGTGAGAAACTCAATAAATTGATGAGTGCAAA < 41bp 0.887703140255396 0.607467899999617 0.870685 0.24047315 prediction 0.560470480511558 Functional Loss - HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132412501 chr5:132412504 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_57869 0 0 1 0 1 HSPA4 chr5:132412590 5'GT 132412590 Upstream 87bp
chr2 26950582 26950582 1 + A T LUAD 26950578 + 26950558 26950598 41 ACGGATGGCGGCAAGGTGTTCTGCATGTTCTACGCGCTGCT ACGGATGGCGGCAAGGTGTTCTGCTTGTTCTACGCGCTGCT < 41bp 0.780195203351134 0.475371763497998 0.34558088 0.53829616 prediction 0.560390406702267 Functional Loss - KCNK3 ENSG00000171303 CDS Human protein_coding chr2:26950578 chr2:26950582 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_57871 0 0 1 0 1 KCNK3 chr2:26950535 3'AG 26950535 Downstream 48bp
chr6 43399880 43399880 1 + G T SARC 43399877 + 43399857 43399897 41 CTTGTCTTCCCCCTTGTCCCCAGGAGTCCAGATTACATCCT CTTGTCTTCCCCCTTGTCCCCAGTAGTCCAGATTACATCCT < 41bp 0.780194546647159 0.39392237024016 0.94615436 0.14821339 prediction 0.560389093294319 Functional Loss - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43399877 chr6:43399880 nonsynonymous SNV 0.203 3 24 hm5C_associated_SNPs_57872 0 0 1 0 1 ABCC10 chr6:43399880 3'AG 43399880 Downstream 1bp
chr1 223943318 223943318 1 + G T PRAD 223943315 + 223943295 223943335 41 CGGCGGCAGAGGAAGATGGGCGAGGACATGCACACCATCGG CGGCGGCAGAGGAAGATGGGCGATGACATGCACACCATCGG < 41bp 0.78018432441909 0.397611877243898 0.8214059 0.385389 prediction 0.56036864883818 Functional Loss - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943315 chr1:223943318 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_57873 0 0 1 0 1 CAPN2 chr1:223943351 5'GT 223943351 Upstream 34bp
chr19 7986943 7986943 1 + A T LUAD 7986939 + 7986919 7986959 41 GGTGCTCACCATCGCGGCCACGGAACCGGTCACCCTCCTGC GGTGCTCACCATCGCGGCCACGGATCCGGTCACCCTCCTGC < 41bp 0.82720929397164 0.547038685314786 0.65284884 0.3157832 prediction 0.560341217313708 Functional Loss - SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7986939 chr19:7986943 nonsynonymous SNV 0.279 4 25 hm5C_associated_SNPs_57877 0 0 0 0 1 SNAPC2 chr19:7986920 3'AG 7986920 Downstream 24bp
chr8 27528509 27528509 1 + A C SKCM 27528505 + 27528485 27528525 41 AGAGGCCCGAAAGGAGACCCCGGCAGCTTGGGCCCCCTGGG AGAGGCCCGAAAGGAGACCCCGGCCGCTTGGGCCCCCTGGG < 41bp 0.898854701668019 0.618693770171272 0.7365042 0.40180248 prediction 0.560321862993494 Functional Loss - SCARA3 ENSG00000168077 CDS Human protein_coding chr8:27528505 chr8:27528509 nonsynonymous SNV 0.013 1 25 hm5C_associated_SNPs_57879 0 0 1 0 1 SCARA3 chr8:27528417 3'AG 27528417 Downstream 93bp
chr5 35876122 35876122 1 + A C UCEC 35876118 + 35876098 35876138 41 GTTTCAATCCTGAAAGTTTCCTGGACTGCCAGATTCATAGG GTTTCAATCCTGAAAGTTTCCTGGCCTGCCAGATTCATAGG < 41bp 0.901359305463617 0.621201876118035 0.20921737 0.27245954 prediction 0.560314858691163 Functional Loss - IL7R ENSG00000168685 CDS Human protein_coding chr5:35876118 chr5:35876122 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_57880 0 0 0 0 1 IL7R chr5:35876085 3'AG 35876085 Downstream 38bp
chr10 92654638 92654638 1 + G T SARC 92654636 + 92654616 92654656 41 GCCCTCAATTTGATGCAAATCTGCAAAGGAAAGGTATGGTT GCCCTCAATTTGATGCAAATCTTCAAAGGAAAGGTATGGTT < 41bp 0.818182624934778 0.538029315635413 0.23884317 0.35381702 prediction 0.56030661859873 Functional Loss - RPP30 ENSG00000148688 CDS Human protein_coding chr10:92654636 chr10:92654638 nonsynonymous SNV 0.983 4 23 hm5C_associated_SNPs_57881 0 0 1 0 1 RPP30 chr10:92654648 5'GT 92654648 Upstream 11bp
chr18 9533746 9533746 1 + G T LUAD 9533743 + 9533723 9533763 41 GAGACTGAGGAGTACTCCTCCGAGAGCGAGAGCGAGAGTGA GAGACTGAGGAGTACTCCTCCGATAGCGAGAGCGAGAGTGA < 41bp 0.896142306259401 0.615992111800033 0.8935882 0.38457644 prediction 0.560300388918737 Functional Loss - RALBP1 ENSG00000017797 CDS Human protein_coding chr18:9533743 chr18:9533746 nonsynonymous SNV 0.266 0 24 hm5C_associated_SNPs_57883 0 0 1 0 2 RALBP1 chr18:9533701 3'AG 9533701 Downstream 46bp
chr18 9533746 9533746 1 + G T LUAD 9533743 + 9533723 9533763 41 GAGACTGAGGAGTACTCCTCCGAGAGCGAGAGCGAGAGTGA GAGACTGAGGAGTACTCCTCCGATAGCGAGAGCGAGAGTGA < 41bp 0.896142306259401 0.615992111800033 0.8935882 0.38457644 prediction 0.560300388918737 Functional Loss - RALBP1 ENSG00000017797 CDS Human protein_coding chr18:9533743 chr18:9533746 nonsynonymous SNV 0.266 0 24 hm5C_associated_SNPs_57883 0 0 1 0 2 RALBP1 chr18:9533824 5'GT 9533824 Upstream 79bp
chr20 2380358 2380358 1 + G T UCEC 2380356 + 2380336 2380376 41 CCAGTCAAGTACGGCCAGTGCTGGGTCTTCGCCGGAGTCCT CCAGTCAAGTACGGCCAGTGCTTGGTCTTCGCCGGAGTCCT < 41bp 0.780087689790556 0.43631644304854 0.33027703 0.052648395 prediction 0.560175379581113 Functional Loss - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2380356 chr20:2380358 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_57891 0 0 0 0 1 TGM6 chr20:2380384 5'GT 2380384 Upstream 27bp
chr9 71152343 71152343 1 - C G rs117451470 71152347 - 71152327 71152367 41 GGAAAAGCAGAGCTGTCCTGCAGAGAGAGAGGCCTCTGGCA GGAAAAGCAGAGCTGTCCTGCAGACAGAGAGGCCTCTGGCA < 41bp 0.793985770046403 0.513901286898491 0.38854104 0.08839947 prediction 0.560168966295825 Functional Loss - TMEM252 ENSG00000181778 CDS Human protein_coding chr9:71152347 chr9:71152343 nonsynonymous SNV 0.014 0 25 hm5C_associated_SNPs_57893 0 0 0 0 1 TMEM252 chr9:71152409 3'AG 71152409 Downstream 67bp
chr2 101604630 101604630 1 + A T LUSC 101604626 + 101604606 101604646 41 GCAGCTACAGCAAAGGTCAGCTGCAGTGACTCAGCCCCAGC GCAGCTACAGCAAAGGTCAGCTGCTGTGACTCAGCCCCAGC < 41bp 0.78007420981269 0.471993198616723 0.45383057 0.46728104 prediction 0.560148419625381 Functional Loss - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101604626 chr2:101604630 synonymous SNV . 0 25 hm5C_associated_SNPs_57896 0 0 1 0 1 NPAS2 chr2:101604541 3'AG 101604541 Downstream 90bp
chrX 134483128 134483128 1 + G T rs782300749 134483125 + 134483105 134483145 41 ACCTAGAGTCACCTGCACTCCAGGTAATGGGACCTGCCCAG ACCTAGAGTCACCTGCACTCCAGTTAATGGGACCTGCCCAG < 41bp 0.780060393009636 0.399877647844687 0.8642484 0.37499356 prediction 0.560120786019273 Functional Loss - ZNF449 ENSG00000173275 CDS Human protein_coding chrX:134483125 chrX:134483128 nonsynonymous SNV 0.988 0 24 hm5C_associated_SNPs_57898 0 0 0 0 1 ZNF449 chrX:134483035 3'AG 134483035 Downstream 94bp
chr6 43026954 43026954 1 - C G CESC 43026955 - 43026935 43026975 41 AGATGGGGTCTGCGGGCATGCGAGGCGGGAGTTGCGAGTCT AGATGGGGTCTGCGGGCATGCCAGGCGGGAGTTGCGAGTCT < 41bp 0.796541329491453 0.516493329416742 0.91117346 0.8925376 prediction 0.56009600014942 Functional Loss - MRPL2 ENSG00000112651 CDS Human protein_coding chr6:43026955 chr6:43026954 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_57902 0 0 1 0 1 MRPL2 chr6:43026918 5'GT 43026918 Upstream 37bp
chr10 90580074 90580074 1 + A T UCEC 90580070 + 90580050 90580090 41 GTCAGGACTGGCTTTCAAATCCAGAAGACGTGAAAATGCTG GTCAGGACTGGCTTTCAAATCCAGTAGACGTGAAAATGCTG < 41bp 0.780038576564442 0.469312864790572 0.27020222 0.15591922 prediction 0.560077153128884 Functional Loss - LIPM ENSG00000173239 CDS Human protein_coding chr10:90580070 chr10:90580074 nonsynonymous SNV 0.817 1 25 hm5C_associated_SNPs_57903 0 0 0 0 1 LIPM chr10:90579989 3'AG 90579989 Downstream 86bp
chr2 233246297 233246297 1 + A T LUSC 233246293 + 233246273 233246313 41 TGGCGGTGTTCGCGCGCGGCCCGCAGGCGCACCTGGTTCAC TGGCGGTGTTCGCGCGCGGCCCGCTGGCGCACCTGGTTCAC < 41bp 0.822958793912768 0.542921999856574 0.18079281 0.084266245 prediction 0.560073588112388 Functional Loss - ALPP ENSG00000163283 CDS Human protein_coding chr2:233246293 chr2:233246297 nonsynonymous SNV 0.829 3 25 hm5C_associated_SNPs_57904 0 0 0 0 1 ALPP chr2:233246207 3'AG 233246207 Downstream 91bp
chr18 14763746 14763746 1 + G C LUSC 14763745 + 14763725 14763765 41 GGCGGAAAGAACACCTGACACGGCTGAAAGCTTGCTGGAAA GGCGGAAAGAACACCTGACACCGCTGAAAGCTTGCTGGAAA < 41bp 0.795962302992258 0.515928859885416 0.33932686 0.13244286 prediction 0.560066886213684 Functional Loss - ANKRD30B ENSG00000180777 CDS Human protein_coding chr18:14763745 chr18:14763746 synonymous SNV . 0 22 hm5C_associated_SNPs_57905 0 0 0 0 1 ANKRD30B chr18:14763685 3'AG 14763685 Downstream 62bp
chr7 44799010 44799010 1 + G C LUAD 44799006 + 44798986 44799026 41 GGCACAGGCTGCCCCTGCAGCAGGGCATGACCCAGTCCCTG GGCACAGGCTGCCCCTGCAGCAGGCCATGACCCAGTCCCTG < 41bp 0.780030342776073 0.482460318253967 0.92213154 0.68923855 prediction 0.560060685552145 Functional Loss - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44799006 chr7:44799010 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_57906 0 0 1 0 1 ZMIZ2 chr7:44799059 5'GT 44799059 Upstream 50bp
chr17 29095934 29095934 1 + G T LUAD 29095931 + 29095911 29095951 41 TGACCTCAATCAAACAAAACCTGGAAATTTCCCGTCCCTTG TGACCTCAATCAAACAAAACCTGTAAATTTCCCGTCCCTTG < 41bp 0.780013316198907 0.413702477278072 0.0437454 0.037071258 prediction 0.560026632397813 Functional Loss - SUZ12P1 ENSG00000264538 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:29095931 chr17:29095934 . . 0 24 hm5C_associated_SNPs_57908 0 0 1 0 1 SUZ12P1 chr17:29095852 3'AG 29095852 Downstream 83bp
chr2 202744829 202744829 1 + G T UCEC 202744827 + 202744807 202744847 41 CCAGAGACCGCGTCTCCGCCCAGGAAGCACTTGTTCATGAT CCAGAGACCGCGTCTCCGCCCATGAAGCACTTGTTCATGAT < 41bp 0.858418795558741 0.578410356545183 0.19498667 0.04996285 prediction 0.560016878027116 Functional Loss - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202744827 chr2:202744829 nonsynonymous SNV 0.918 0 23 hm5C_associated_SNPs_57910 0 0 0 12 2 CDK15 chr2:202744751 3'AG 202744751 Downstream 79bp
chr2 202744829 202744829 1 + G T UCEC 202744827 + 202744807 202744847 41 CCAGAGACCGCGTCTCCGCCCAGGAAGCACTTGTTCATGAT CCAGAGACCGCGTCTCCGCCCATGAAGCACTTGTTCATGAT < 41bp 0.858418795558741 0.578410356545183 0.19498667 0.04996285 prediction 0.560016878027116 Functional Loss - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202744827 chr2:202744829 nonsynonymous SNV 0.918 0 23 hm5C_associated_SNPs_57910 0 0 0 12 2 CDK15 chr2:202744890 5'GT 202744890 Upstream 62bp
chr10 114173039 114173039 1 + C T STAD 114173037 + 114173017 114173057 41 CACATTGTTTCCCGCGGTGCCTCGACTCCTTAACAGGATCT CACATTGTTTCCCGCGGTGCCTTGACTCCTTAACAGGATCT < 41bp 0.791573021368621 0.511576477578242 0.106978714 0.04865244 prediction 0.559993087580757 Functional Loss - ACSL5 ENSG00000197142 CDS Human protein_coding chr10:114173037 chr10:114173039 stopgain 0.970 1 23 hm5C_associated_SNPs_57911 0 0 1 0 1 ACSL5 chr10:114173065 5'GT 114173065 Upstream 27bp
chr7 130002831 130002831 1 + G T UCEC 130002829 + 130002809 130002849 41 GATGGGTTTGCTTTTACCCACAGCATGGTGAGGGAACCTGG GATGGGTTTGCTTTTACCCACATCATGGTGAGGGAACCTGG < 41bp 0.779995031990998 0.46286379541323 0.18879935 0.098248094 prediction 0.559990063981995 Functional Loss - CPA5 ENSG00000158525 CDS Human protein_coding chr7:130002829 chr7:130002831 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_57912 0 0 0 0 1 CPA5 chr7:130002835 5'GT 130002835 Upstream 5bp
chr2 102992438 102992438 1 + G T LUAD 102992436 + 102992416 102992456 41 AGAACGCCGAGTTTGAAGATCAGGGGTATTACTCCTGCGTG AGAACGCCGAGTTTGAAGATCATGGGTATTACTCCTGCGTG < 41bp 0.846404151275173 0.566409345915371 0.9347014 0.8063652 prediction 0.559989610719603 Functional Loss - IL18R1 ENSG00000115604 CDS Human protein_coding chr2:102992436 chr2:102992438 nonsynonymous SNV 0.036 0 23 hm5C_associated_SNPs_57913 0 0 0 0 2 IL18R1 chr2:102992367 3'AG 102992367 Downstream 72bp
chr2 102992438 102992438 1 + G T LUAD 102992436 + 102992416 102992456 41 AGAACGCCGAGTTTGAAGATCAGGGGTATTACTCCTGCGTG AGAACGCCGAGTTTGAAGATCATGGGTATTACTCCTGCGTG < 41bp 0.846404151275173 0.566409345915371 0.9347014 0.8063652 prediction 0.559989610719603 Functional Loss - IL18R1 ENSG00000115604 CDS Human protein_coding chr2:102992436 chr2:102992438 nonsynonymous SNV 0.036 0 23 hm5C_associated_SNPs_57913 0 0 0 0 2 IL18R1 chr2:102992523 5'GT 102992523 Upstream 86bp
chr1 154965221 154965221 1 + G T SARC 154965219 + 154965199 154965239 41 ACAGAGACATCTGGGATTTTCTGCGTCAGCTGTTTGTCCCA ACAGAGACATCTGGGATTTTCTTCGTCAGCTGTTTGTCCCA < 41bp 0.779960527876436 0.457837010545835 0.33397382 0.18011478 prediction 0.559921055752871 Functional Loss - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154965219 chr1:154965221 synonymous SNV . 0 23 hm5C_associated_SNPs_57915 0 0 1 0 1 FLAD1 chr1:154965189 3'AG 154965189 Downstream 33bp
chr6 69349298 69349298 1 + G T HNSC 69349296 + 69349276 69349316 41 ACCCAAGTCTGCAATCTTACCAGGGAGGCCAAGCGACCACC ACCCAAGTCTGCAATCTTACCATGGAGGCCAAGCGACCACC < 41bp 0.781700787015007 0.501746983368624 0.9178206 0.4943798 prediction 0.559907607292766 Functional Loss - ADGRB3 ENSG00000135298 CDS Human protein_coding chr6:69349296 chr6:69349298 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_57917 0 0 0 0 1 ADGRB3 chr6:69349324 5'GT 69349324 Upstream 27bp
chr20 43629144 43629144 1 + G T UCEC 43629141 + 43629121 43629161 41 CCCAGCAGCGGGAAGTGGACCAGGACGATGAAGAAAACTCA CCCAGCAGCGGGAAGTGGACCAGTACGATGAAGAAAACTCA < 41bp 0.77995349223841 0.403323441159835 0.722353 0.28550425 prediction 0.559906984476819 Functional Loss - STK4 ENSG00000101109 CDS Human protein_coding chr20:43629141 chr20:43629144 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_57918 0 0 1 0 1 STK4 chr20:43629161 5'GT 43629161 Upstream 18bp
chr2 114398970 114398970 1 + G T UCEC 114398967 + 114398947 114398987 41 CAAAAAAGCTTCAATTTTGCCAAGAAGTTCTCCCTGCCCCT CAAAAAAGCTTCAATTTTGCCAATAAGTTCTCCCTGCCCCT < 41bp 0.779950235666934 0.396668670029378 0.24722344 0.026900291 prediction 0.559900471333868 Functional Loss - RABL2A ENSG00000144134 CDS Human protein_coding chr2:114398967 chr2:114398970 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_57920 0 0 0 0 3 RABL2A chr2:114398930 3'AG 114398930 Downstream 41bp
chr2 114398970 114398970 1 + G T UCEC 114398967 + 114398947 114398987 41 CAAAAAAGCTTCAATTTTGCCAAGAAGTTCTCCCTGCCCCT CAAAAAAGCTTCAATTTTGCCAATAAGTTCTCCCTGCCCCT < 41bp 0.779950235666934 0.396668670029378 0.24722344 0.026900291 prediction 0.559900471333868 Functional Loss - RABL2A ENSG00000144134 CDS Human protein_coding chr2:114398967 chr2:114398970 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_57920 0 0 0 0 3 RABL2A chr2:114398933 3'AG 114398933 Downstream 38bp
chr2 114398970 114398970 1 + G T UCEC 114398967 + 114398947 114398987 41 CAAAAAAGCTTCAATTTTGCCAAGAAGTTCTCCCTGCCCCT CAAAAAAGCTTCAATTTTGCCAATAAGTTCTCCCTGCCCCT < 41bp 0.779950235666934 0.396668670029378 0.24722344 0.026900291 prediction 0.559900471333868 Functional Loss - RABL2A ENSG00000144134 CDS Human protein_coding chr2:114398967 chr2:114398970 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_57920 0 0 0 0 3 RABL2A chr2:114399027 5'GT 114399027 Upstream 58bp
chr1 156552866 156552866 1 + A T SKCM 156552862 + 156552842 156552882 41 GGGCAGCGGTGGGAGCAGGGCCGGAGCTTTGGCAGCCTGGC GGGCAGCGGTGGGAGCAGGGCCGGTGCTTTGGCAGCCTGGC < 41bp 0.779941919623401 0.485337604621597 0.8923863 0.889096 prediction 0.559883839246803 Functional Loss - TTC24 ENSG00000187862 CDS Human protein_coding chr1:156552862 chr1:156552866 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_57923 0 0 0 0 2 TTC24 chr1:156552834 3'AG 156552834 Downstream 33bp
chr1 156552866 156552866 1 + A T SKCM 156552862 + 156552842 156552882 41 GGGCAGCGGTGGGAGCAGGGCCGGAGCTTTGGCAGCCTGGC GGGCAGCGGTGGGAGCAGGGCCGGTGCTTTGGCAGCCTGGC < 41bp 0.779941919623401 0.485337604621597 0.8923863 0.889096 prediction 0.559883839246803 Functional Loss - TTC24 ENSG00000187862 CDS Human protein_coding chr1:156552862 chr1:156552866 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_57923 0 0 0 0 2 TTC24 chr1:156552962 5'GT 156552962 Upstream 97bp
chr6 26388296 26388296 1 + G T SARC 26388293 + 26388273 26388313 41 GCCCAAGAGGATGGGAGCATCTGGCTGGAGTGCATATCTGG GCCCAAGAGGATGGGAGCATCTGTCTGGAGTGCATATCTGG < 41bp 0.779924618709979 0.400690165691139 0.3702658 0.10693058 prediction 0.559849237419957 Functional Loss - BTN2A2 ENSG00000124508 CDS Human protein_coding chr6:26388293 chr6:26388296 nonsynonymous SNV 0.081 1 24 hm5C_associated_SNPs_57925 0 0 1 0 1 BTN2A2 chr6:26388241 3'AG 26388241 Downstream 56bp
chr20 42265860 42265860 1 + G T LUAD 42265858 + 42265838 42265878 41 TTTAGATGAAACGTTCTCCTCTGAGAAGGCACGGCTGGCTC TTTAGATGAAACGTTCTCCTCTTAGAAGGCACGGCTGGCTC < 41bp 0.779901508146401 0.449964069767734 0.13200572 0.045235068 prediction 0.559803016292803 Functional Loss - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42265858 chr20:42265860 stopgain 0.991 1 23 hm5C_associated_SNPs_57927 0 0 1 0 1 IFT52 chr20:42265785 3'AG 42265785 Downstream 76bp
chr19 17337943 17337943 1 + G T COAD 17337940 + 17337920 17337960 41 TCCCAGGCCCTCCTGGGCGCCAAGAAGCCTATTGGAGCCAT TCCCAGGCCCTCCTGGGCGCCAATAAGCCTATTGGAGCCAT < 41bp 0.779900134353104 0.398310433753386 0.22258657 0.14912885 prediction 0.559800268706208 Functional Loss - OCEL1 ENSG00000099330 CDS Human protein_coding chr19:17337940 chr19:17337943 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_57928 0 0 1 0 1 OCEL1 chr19:17338008 5'GT 17338008 Upstream 66bp
chr3 52512504 52512504 1 + G T LUSC 52512501 + 52512481 52512521 41 GCATAGGCAGCCTCCCGTGTCTGGAGCACGTGTCTCTGCTG GCATAGGCAGCCTCCCGTGTCTGTAGCACGTGTCTCTGCTG < 41bp 0.902476599242359 0.622605011442611 0.5310368 0.15298742 prediction 0.559743175599496 Functional Loss - NISCH ENSG00000010322 CDS Human protein_coding chr3:52512501 chr3:52512504 stopgain 0.993 1 24 hm5C_associated_SNPs_57934 0 0 1 0 2 NISCH chr3:52512465 3'AG 52512465 Downstream 40bp
chr3 52512504 52512504 1 + G T LUSC 52512501 + 52512481 52512521 41 GCATAGGCAGCCTCCCGTGTCTGGAGCACGTGTCTCTGCTG GCATAGGCAGCCTCCCGTGTCTGTAGCACGTGTCTCTGCTG < 41bp 0.902476599242359 0.622605011442611 0.5310368 0.15298742 prediction 0.559743175599496 Functional Loss - NISCH ENSG00000010322 CDS Human protein_coding chr3:52512501 chr3:52512504 stopgain 0.993 1 24 hm5C_associated_SNPs_57934 0 0 1 0 2 NISCH chr3:52512593 5'GT 52512593 Upstream 90bp
chr3 63542272 63542272 1 + A C UCEC 63542268 + 63542248 63542288 41 CCTGCGAGGGAAAGGAACGGCAGAAGCTGGCATTGATTGGT CCTGCGAGGGAAAGGAACGGCAGACGCTGGCATTGATTGGT < 41bp 0.779786624577171 0.395285711769777 0.8311906 0.7378838 prediction 0.559573249154342 Functional Loss - SYNPR ENSG00000163630 CDS Human protein_coding chr3:63542268 chr3:63542272 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_57942 0 0 0 2 1 SYNPR chr3:63542219 3'AG 63542219 Downstream 54bp
chr13 38933458 38933458 1 + G T LIHC 38933456 + 38933436 38933476 41 AGATGGAATAGGAATAAATCCTGCACAGACTGCTGGTGAGT AGATGGAATAGGAATAAATCCTTCACAGACTGCTGGTGAGT < 41bp 0.806732978543428 0.526965726527231 0.12472612 0.05356422 prediction 0.559534504032394 Functional Loss - UFM1 ENSG00000120686 CDS Human protein_coding chr13:38933456 chr13:38933458 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_57946 0 0 1 0 2 UFM1 chr13:38933438 3'AG 38933438 Downstream 21bp
chr13 38933458 38933458 1 + G T LIHC 38933456 + 38933436 38933476 41 AGATGGAATAGGAATAAATCCTGCACAGACTGCTGGTGAGT AGATGGAATAGGAATAAATCCTTCACAGACTGCTGGTGAGT < 41bp 0.806732978543428 0.526965726527231 0.12472612 0.05356422 prediction 0.559534504032394 Functional Loss - UFM1 ENSG00000120686 CDS Human protein_coding chr13:38933456 chr13:38933458 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_57946 0 0 1 0 2 UFM1 chr13:38933470 5'GT 38933470 Upstream 13bp
chr16 31309246 31309246 1 + G T UCEC 31309244 + 31309224 31309264 41 TTACCTGTTTCACGGAACCTCAGGATCTGGCATCAGCCCCT TTACCTGTTTCACGGAACCTCATGATCTGGCATCAGCCCCT < 41bp 0.866800543801919 0.587043229148684 0.5768242 0.12275052 prediction 0.559514629306469 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31309244 chr16:31309246 stopgain 0.042 0 23 hm5C_associated_SNPs_57947 0 0 0 0 1 ITGAM chr16:31309275 5'GT 31309275 Upstream 30bp
chrX 207360 207360 1 + G T PAAD 207357 + 207337 207377 41 TGGATGCCGGGGTGCGGTACCTGGACCTGCGGATAGCCCAC TGGATGCCGGGGTGCGGTACCTGTACCTGCGGATAGCCCAC < 41bp 0.899331374663569 0.619577859195749 0.8915415 0.70954895 prediction 0.55950703093564 Functional Loss - PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:207357 chrX:207360 nonsynonymous SNV 0.627 3 24 hm5C_associated_SNPs_57950 0 0 1 0 2 PLCXD1 chrX:207315 3'AG 207315 Downstream 46bp
chrX 207360 207360 1 + G T PAAD 207357 + 207337 207377 41 TGGATGCCGGGGTGCGGTACCTGGACCTGCGGATAGCCCAC TGGATGCCGGGGTGCGGTACCTGTACCTGCGGATAGCCCAC < 41bp 0.899331374663569 0.619577859195749 0.8915415 0.70954895 prediction 0.55950703093564 Functional Loss - PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:207357 chrX:207360 nonsynonymous SNV 0.627 3 24 hm5C_associated_SNPs_57950 0 0 1 0 2 PLCXD1 chrX:207443 5'GT 207443 Upstream 84bp
chr1 12711270 12711270 1 + G T COAD 12711267 + 12711247 12711287 41 CTGCGTTTTGGGACGATACCCGTGAGGCTGTTCCAGCCGAA CTGCGTTTTGGGACGATACCCGTTAGGCTGTTCCAGCCGAA < 41bp 0.900688046602649 0.620935000196328 0.8704504 0.3087759 prediction 0.559506092812643 Functional Loss - AADACL4 ENSG00000204518 CDS Human protein_coding chr1:12711267 chr1:12711270 synonymous SNV . 0 24 hm5C_associated_SNPs_57951 0 0 0 0 1 AADACL4 chr1:12711358 5'GT 12711358 Upstream 89bp
chr6 43267197 43267197 1 + G T LUAD 43267194 + 43267174 43267214 41 CTTTCTTCTTCGCCGGTGTGCTGGTGGGGGCTGTGGCCTTT CTTTCTTCTTCGCCGGTGTGCTGTTGGGGGCTGTGGCCTTT < 41bp 0.779742654940578 0.377524587693559 0.37914518 0.11728668 prediction 0.559485309881155 Functional Loss - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43267194 chr6:43267197 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_57952 0 0 1 0 2 SLC22A7 chr6:43267128 3'AG 43267128 Downstream 70bp
chr6 43267197 43267197 1 + G T LUAD 43267194 + 43267174 43267214 41 CTTTCTTCTTCGCCGGTGTGCTGGTGGGGGCTGTGGCCTTT CTTTCTTCTTCGCCGGTGTGCTGTTGGGGGCTGTGGCCTTT < 41bp 0.779742654940578 0.377524587693559 0.37914518 0.11728668 prediction 0.559485309881155 Functional Loss - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43267194 chr6:43267197 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_57952 0 0 1 0 2 SLC22A7 chr6:43267231 5'GT 43267231 Upstream 35bp
chr13 24243158 24243158 1 + G T UCEC 24243156 + 24243136 24243176 41 TGGTAGAATCAGCATCAACTCAGGATGCACTAACTATGAGA TGGTAGAATCAGCATCAACTCATGATGCACTAACTATGAGA < 41bp 0.833504270793277 0.553771181931887 0.67398274 0.20343876 prediction 0.55946617772278 Functional Loss - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24243156 chr13:24243158 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_57953 0 0 0 0 1 TNFRSF19 chr13:24243236 5'GT 24243236 Upstream 79bp
chr6 161127478 161127478 1 + G C CESC 161127474 + 161127454 161127494 41 TGGATGACTATGTGAATACCCAGGGGGCTTCACTGTTCAGT TGGATGACTATGTGAATACCCAGGCGGCTTCACTGTTCAGT < 41bp 0.790271447919065 0.510540391177013 0.92011386 0.68192524 prediction 0.559462113484104 Functional Loss - PLG ENSG00000122194 CDS Human protein_coding chr6:161127474 chr6:161127478 nonsynonymous SNV 0.566 3 25 hm5C_associated_SNPs_57954 0 0 0 0 2 PLG chr6:161127439 3'AG 161127439 Downstream 40bp
chr6 161127478 161127478 1 + G C CESC 161127474 + 161127454 161127494 41 TGGATGACTATGTGAATACCCAGGGGGCTTCACTGTTCAGT TGGATGACTATGTGAATACCCAGGCGGCTTCACTGTTCAGT < 41bp 0.790271447919065 0.510540391177013 0.92011386 0.68192524 prediction 0.559462113484104 Functional Loss - PLG ENSG00000122194 CDS Human protein_coding chr6:161127474 chr6:161127478 nonsynonymous SNV 0.566 3 25 hm5C_associated_SNPs_57954 0 0 0 0 2 PLG chr6:161127574 5'GT 161127574 Upstream 97bp
chr12 9074263 9074263 1 + G C LUAD 9074259 + 9074239 9074279 41 TCCCAGAGTGTGAGCTCTCCCAGTGCTACCACCTTGACCCA TCCCAGAGTGTGAGCTCTCCCAGTCCTACCACCTTGACCCA < 41bp 0.779718706648271 0.493582901995463 0.85978997 0.78353894 prediction 0.559437413296542 Functional Loss - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9074259 chr12:9074263 nonsynonymous SNV 0.986 4 25 hm5C_associated_SNPs_57956 0 0 0 0 2 PHC1 chr12:9074197 3'AG 9074197 Downstream 67bp
chr12 9074263 9074263 1 + G C LUAD 9074259 + 9074239 9074279 41 TCCCAGAGTGTGAGCTCTCCCAGTGCTACCACCTTGACCCA TCCCAGAGTGTGAGCTCTCCCAGTCCTACCACCTTGACCCA < 41bp 0.779718706648271 0.493582901995463 0.85978997 0.78353894 prediction 0.559437413296542 Functional Loss - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9074259 chr12:9074263 nonsynonymous SNV 0.986 4 25 hm5C_associated_SNPs_57956 0 0 0 0 2 PHC1 chr12:9074346 5'GT 9074346 Upstream 84bp
chr7 44079940 44079940 1 + A C rs548074544 44079936 + 44079916 44079956 41 GGAGAGAAGAAGCGCAGGCACAGGAAGCTGGTGACGGCGAT GGAGAGAAGAAGCGCAGGCACAGGCAGCTGGTGACGGCGAT < 41bp 0.889037567830027 0.609323492082229 0.3398804 0.32000905 prediction 0.559428151495595 Functional Loss - LINC00957;RASA4CP ENSG00000228903;ENSG00000235314 ncRNA_exonic Human other chr7:44079936 chr7:44079940 . . 0 25 hm5C_associated_SNPs_57957 0 0 0 0 1 LINC00957;RASA4CP chr7:44079961 5'GT 44079961 Upstream 22bp
chr1 160100080 160100080 1 + G T LUSC 160100078 + 160100058 160100098 41 GGGGACTTGGGGAGCGTGTGCTGGGTGAGAGGCCAGAAACA GGGGACTTGGGGAGCGTGTGCTTGGTGAGAGGCCAGAAACA < 41bp 0.779711868771254 0.439477160062678 0.8588228 0.41936168 prediction 0.559423737542507 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160100078 chr1:160100080 synonymous SNV . 0 23 hm5C_associated_SNPs_57958 0 0 0 0 1 ATP1A2 chr1:160100081 5'GT 160100081 Upstream 2bp
chr2 201527602 201527602 1 + G T OV 201527599 + 201527579 201527619 41 GGTTATGAGTCAGACATGAACTGGGAGAAAGGCGAAGGCCA GGTTATGAGTCAGACATGAACTGTGAGAAAGGCGAAGGCCA < 41bp 0.779710976939594 0.391691038146815 0.40663922 0.037513703 prediction 0.559421953879188 Functional Loss - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201527599 chr2:201527602 nonsynonymous SNV 0.971 4 24 hm5C_associated_SNPs_57959 0 0 0 0 2 AOX1 chr2:201527578 3'AG 201527578 Downstream 25bp
chr2 201527602 201527602 1 + G T OV 201527599 + 201527579 201527619 41 GGTTATGAGTCAGACATGAACTGGGAGAAAGGCGAAGGCCA GGTTATGAGTCAGACATGAACTGTGAGAAAGGCGAAGGCCA < 41bp 0.779710976939594 0.391691038146815 0.40663922 0.037513703 prediction 0.559421953879188 Functional Loss - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201527599 chr2:201527602 nonsynonymous SNV 0.971 4 24 hm5C_associated_SNPs_57959 0 0 0 0 2 AOX1 chr2:201527692 5'GT 201527692 Upstream 91bp
chr1 11907662 11907662 1 + G C GBM 11907658 + 11907638 11907678 41 GCGTTGGACACGGCATTGTACATGGGATTAGCTCTGGTCTG GCGTTGGACACGGCATTGTACATGCGATTAGCTCTGGTCTG < 41bp 0.787490505949505 0.507794855331221 0.8297016 0.30922002 prediction 0.559391301236568 Functional Loss - NPPA ENSG00000175206 CDS Human protein_coding chr1:11907658 chr1:11907662 nonsynonymous SNV 0.004 4 25 hm5C_associated_SNPs_57960 0 0 0 0 1 NPPA chr1:11907634 3'AG 11907634 Downstream 29bp
chr1 156131247 156131247 1 + G T LUAD 156131244 + 156131224 156131264 41 CCCTTCAACGTCATCCGCCACGCGGTCCTGCTCCCCGCCGA CCCTTCAACGTCATCCGCCACGCTGTCCTGCTCCCCGCCGA < 41bp 0.906549647896206 0.626865573843482 0.40405557 0.08361566 prediction 0.559368148105447 Functional Loss - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156131244 chr1:156131247 synonymous SNV . 0 24 hm5C_associated_SNPs_57962 0 0 0 0 1 SEMA4A chr1:156131309 5'GT 156131309 Upstream 63bp
chr14 24843536 24843536 1 + G T PAAD 24843534 + 24843514 24843554 41 CCTTGCACTGCTCTGCAGCCCAGCGCTCAGCCCAGGAGCTG CCTTGCACTGCTCTGCAGCCCATCGCTCAGCCCAGGAGCTG < 41bp 0.779659925131592 0.492034177127585 0.13532594 0.051850557 prediction 0.559319850263184 Functional Loss - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24843534 chr14:24843536 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_57964 0 0 1 0 1 NFATC4 chr14:24843532 3'AG 24843532 Downstream 5bp
chr19 14034203 14034203 1 + G T LUAD 14034201 + 14034181 14034221 41 CCTGGTCCAGCGGCCTGGCCCGGGTCTGTCTCAGGAGGCCG CCTGGTCCAGCGGCCTGGCCCGTGTCTGTCTCAGGAGGCCG < 41bp 0.779656729198388 0.433247995932461 0.6918627 0.111297995 prediction 0.559313458396776 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14034201 chr19:14034203 nonsynonymous SNV 0.952 1 23 hm5C_associated_SNPs_57965 0 0 1 0 2 CC2D1A chr19:14034146 3'AG 14034146 Downstream 58bp
chr19 14034203 14034203 1 + G T LUAD 14034201 + 14034181 14034221 41 CCTGGTCCAGCGGCCTGGCCCGGGTCTGTCTCAGGAGGCCG CCTGGTCCAGCGGCCTGGCCCGTGTCTGTCTCAGGAGGCCG < 41bp 0.779656729198388 0.433247995932461 0.6918627 0.111297995 prediction 0.559313458396776 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14034201 chr19:14034203 nonsynonymous SNV 0.952 1 23 hm5C_associated_SNPs_57965 0 0 1 0 2 CC2D1A chr19:14034268 5'GT 14034268 Upstream 66bp
chr3 129812003 129812003 1 + G T UCEC 129812001 + 129811981 129812021 41 TTCTCTCGTCTGTGTGATAACAGGTACTGCCTGGGACCCTG TTCTCTCGTCTGTGTGATAACATGTACTGCCTGGGACCCTG < 41bp 0.779652126372039 0.459842068919559 0.8394468 0.19288352 prediction 0.559304252744078 Functional Loss - ALG1L2 ENSG00000251287 ncRNA_exonic Human protein_coding chr3:129812001 chr3:129812003 . 0.756 2 23 hm5C_associated_SNPs_57966 0 0 0 0 1 ALG1L2 chr3:129812003 5'GT 129812003 Upstream 1bp
chr1 160390300 160390300 1 + G T UCEC 160390297 + 160390277 160390317 41 CTGCCCAAGTCCGTCCTGGCCAAGAAAGTGTCTGGCTTCAA CTGCCCAAGTCCGTCCTGGCCAATAAAGTGTCTGGCTTCAA < 41bp 0.779630193474573 0.390441066832921 0.5224962 0.3400793 prediction 0.559260386949146 Functional Loss - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160390297 chr1:160390300 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_57970 0 0 0 0 1 VANGL2 chr1:160390201 3'AG 160390201 Downstream 100bp
chr1 228335335 228335335 1 + G C LUSC 228335331 + 228335311 228335351 41 TTTAGGAGCAGCGGCTGCGGCAGCGCAACACTGAAACCGAG TTTAGGAGCAGCGGCTGCGGCAGCCCAACACTGAAACCGAG < 41bp 0.794317777592571 0.514689280566284 0.86869484 0.7165432 prediction 0.559256994052573 Functional Loss - GUK1 ENSG00000143774 CDS Human protein_coding chr1:228335331 chr1:228335335 nonsynonymous SNV 0.946 4 25 hm5C_associated_SNPs_57972 0 0 1 0 2 GUK1 chr1:228335316 3'AG 228335316 Downstream 20bp
chr1 228335335 228335335 1 + G C LUSC 228335331 + 228335311 228335351 41 TTTAGGAGCAGCGGCTGCGGCAGCGCAACACTGAAACCGAG TTTAGGAGCAGCGGCTGCGGCAGCCCAACACTGAAACCGAG < 41bp 0.794317777592571 0.514689280566284 0.86869484 0.7165432 prediction 0.559256994052573 Functional Loss - GUK1 ENSG00000143774 CDS Human protein_coding chr1:228335331 chr1:228335335 nonsynonymous SNV 0.946 4 25 hm5C_associated_SNPs_57972 0 0 1 0 2 GUK1 chr1:228335400 5'GT 228335400 Upstream 66bp
chr16 24909430 24909430 1 + G T GBM 24909428 + 24909408 24909448 41 GGTCAGCCGCATCCTCTTCCCAGGTGAGAACACAGCTGGGG GGTCAGCCGCATCCTCTTCCCATGTGAGAACACAGCTGGGG < 41bp 0.779622070388549 0.438900221279407 0.9040204 0.81549037 prediction 0.559244140777099 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24909428 chr16:24909430 nonsynonymous SNV 0.995 5 23 hm5C_associated_SNPs_57974 0 0 0 0 1 SLC5A11 chr16:24909430 5'GT 24909430 Upstream 1bp
chr1 111781471 111781471 1 + G T UCEC 111781469 + 111781449 111781489 41 CTCCTTCACACTGGCCTCTGCAGAAACCACCGTGGGGGCCC CTCCTTCACACTGGCCTCTGCATAAACCACCGTGGGGGCCC < 41bp 0.865936143565623 0.586319722071092 0.38907048 0.10793656 prediction 0.559232842989061 Functional Loss - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111781469 chr1:111781471 stopgain 0.898 0 23 hm5C_associated_SNPs_57975 0 0 0 0 2 CHI3L2 chr1:111781372 3'AG 111781372 Downstream 100bp
chr1 111781471 111781471 1 + G T UCEC 111781469 + 111781449 111781489 41 CTCCTTCACACTGGCCTCTGCAGAAACCACCGTGGGGGCCC CTCCTTCACACTGGCCTCTGCATAAACCACCGTGGGGGCCC < 41bp 0.865936143565623 0.586319722071092 0.38907048 0.10793656 prediction 0.559232842989061 Functional Loss - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111781469 chr1:111781471 stopgain 0.898 0 23 hm5C_associated_SNPs_57975 0 0 0 0 2 CHI3L2 chr1:111781554 5'GT 111781554 Upstream 84bp
chr19 9949166 9949166 1 + G T SARC 9949164 + 9949144 9949184 41 GCCAGCCAGTGGGAGCGGCCCAGCGGCAACAGCAGCAGTGG GCCAGCCAGTGGGAGCGGCCCATCGGCAACAGCAGCAGTGG < 41bp 0.865929458489974 0.586353085157574 0.5667837 0.20827246 prediction 0.559152746664798 Functional Loss - PIN1 ENSG00000127445 CDS Human protein_coding chr19:9949164 chr19:9949166 nonsynonymous SNV 0.684 0 23 hm5C_associated_SNPs_57980 0 0 1 1 1 PIN1 chr19:9949112 3'AG 9949112 Downstream 55bp
chr10 124186524 124186524 1 + G T UCEC 124186521 + 124186501 124186541 41 CTGGCGCCATTGTAGCACAGCGGGGTCCCGGCAGATCTGCG CTGGCGCCATTGTAGCACAGCGGTGTCCCGGCAGATCTGCG < 41bp 0.779568872661683 0.394298803118948 0.86179197 0.3276356 prediction 0.559137745323366 Functional Loss - PLEKHA1 ENSG00000107679 CDS Human protein_coding chr10:124186521 chr10:124186524 nonsynonymous SNV 0.900 3 24 hm5C_associated_SNPs_57984 0 0 1 0 2 PLEKHA1 chr10:124186458 3'AG 124186458 Downstream 67bp
chr10 124186524 124186524 1 + G T UCEC 124186521 + 124186501 124186541 41 CTGGCGCCATTGTAGCACAGCGGGGTCCCGGCAGATCTGCG CTGGCGCCATTGTAGCACAGCGGTGTCCCGGCAGATCTGCG < 41bp 0.779568872661683 0.394298803118948 0.86179197 0.3276356 prediction 0.559137745323366 Functional Loss - PLEKHA1 ENSG00000107679 CDS Human protein_coding chr10:124186521 chr10:124186524 nonsynonymous SNV 0.900 3 24 hm5C_associated_SNPs_57984 0 0 1 0 2 PLEKHA1 chr10:124186547 5'GT 124186547 Upstream 24bp
chr16 47703283 47703283 1 + C T UCEC 47703281 + 47703261 47703301 41 ATCCATATTGGCTGGATCATCTCCAATAACCCTGAGTTATT ATCCATATTGGCTGGATCATCTTCAATAACCCTGAGTTATT < 41bp 0.799721051911438 0.520154612622551 0.96916616 0.82342565 prediction 0.559132878577774 Functional Loss - PHKB ENSG00000102893 CDS Human protein_coding chr16:47703281 chr16:47703283 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_57985 0 0 0 0 1 PHKB chr16:47703328 5'GT 47703328 Upstream 46bp
chr15 25427429 25427429 1 + G T LUAD 25427427 + 25427407 25427447 41 GGTGTCCAGCCCCTGGTGCACTGAAGATCGGGCCCTTCCTG GGTGTCCAGCCCCTGGTGCACTTAAGATCGGGCCCTTCCTG < 41bp 0.779563483100527 0.462672130788923 0.19794554 0.33474302 prediction 0.559126966201055 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25427427 chr15:25427429 . . 0 23 hm5C_associated_SNPs_57987 0 0 0 3 2 SNHG14 chr15:25427344 3'AG 25427344 Downstream 86bp
chr15 25427429 25427429 1 + G T LUAD 25427427 + 25427407 25427447 41 GGTGTCCAGCCCCTGGTGCACTGAAGATCGGGCCCTTCCTG GGTGTCCAGCCCCTGGTGCACTTAAGATCGGGCCCTTCCTG < 41bp 0.779563483100527 0.462672130788923 0.19794554 0.33474302 prediction 0.559126966201055 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25427427 chr15:25427429 . . 0 23 hm5C_associated_SNPs_57987 0 0 0 3 2 SNHG14 chr15:25427475 5'GT 25427475 Upstream 47bp
chr19 11464486 11464486 1 + G T HNSC 11464484 + 11464464 11464504 41 GCAGGTCTGCTGTGCACGTGCTGCAGAACTCCATAGACAGC GCAGGTCTGCTGTGCACGTGCTTCAGAACTCCATAGACAGC < 41bp 0.779549545653301 0.458713974142777 0.033307552 0.020711511 prediction 0.559099091306602 Functional Loss - CCDC159 ENSG00000183401 CDS Human protein_coding chr19:11464484 chr19:11464486 synonymous SNV . 0 23 hm5C_associated_SNPs_57989 0 0 1 0 2 CCDC159 chr19:11464468 3'AG 11464468 Downstream 19bp
chr19 11464486 11464486 1 + G T HNSC 11464484 + 11464464 11464504 41 GCAGGTCTGCTGTGCACGTGCTGCAGAACTCCATAGACAGC GCAGGTCTGCTGTGCACGTGCTTCAGAACTCCATAGACAGC < 41bp 0.779549545653301 0.458713974142777 0.033307552 0.020711511 prediction 0.559099091306602 Functional Loss - CCDC159 ENSG00000183401 CDS Human protein_coding chr19:11464484 chr19:11464486 synonymous SNV . 0 23 hm5C_associated_SNPs_57989 0 0 1 0 2 CCDC159 chr19:11464550 5'GT 11464550 Upstream 65bp
chr19 11464488 11464488 1 + A T HNSC 11464484 + 11464464 11464504 41 GCAGGTCTGCTGTGCACGTGCTGCAGAACTCCATAGACAGC GCAGGTCTGCTGTGCACGTGCTGCTGAACTCCATAGACAGC < 41bp 0.779549545653301 0.457597432261759 0.033307552 0.02494958 prediction 0.559099091306602 Functional Loss - CCDC159 ENSG00000183401 CDS Human protein_coding chr19:11464484 chr19:11464488 nonsynonymous SNV 0.920 3 25 hm5C_associated_SNPs_57990 0 0 1 0 2 CCDC159 chr19:11464468 3'AG 11464468 Downstream 21bp
chr19 11464488 11464488 1 + A T HNSC 11464484 + 11464464 11464504 41 GCAGGTCTGCTGTGCACGTGCTGCAGAACTCCATAGACAGC GCAGGTCTGCTGTGCACGTGCTGCTGAACTCCATAGACAGC < 41bp 0.779549545653301 0.457597432261759 0.033307552 0.02494958 prediction 0.559099091306602 Functional Loss - CCDC159 ENSG00000183401 CDS Human protein_coding chr19:11464484 chr19:11464488 nonsynonymous SNV 0.920 3 25 hm5C_associated_SNPs_57990 0 0 1 0 2 CCDC159 chr19:11464550 5'GT 11464550 Upstream 63bp
chr11 134212785 134212785 1 + G T LGG 134212783 + 134212763 134212803 41 ATCCACTATTTCCGTGTGCCCAGGGAGTACTGGAGGGACCG ATCCACTATTTCCGTGTGCCCATGGAGTACTGGAGGGACCG < 41bp 0.779546340419472 0.436175940187371 0.8976722 0.36918503 prediction 0.559092680838943 Functional Loss - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134212783 chr11:134212785 nonsynonymous SNV 0.965 2 23 hm5C_associated_SNPs_57991 0 0 0 0 1 GLB1L2 chr11:134212845 5'GT 134212845 Upstream 61bp
chr19 42791752 42791752 1 + G C LGG 42791751 + 42791731 42791771 41 CCTTCATGATCTTCAGCAAGCGGCACCGGGCCCTGGTCCAC CCTTCATGATCTTCAGCAAGCCGCACCGGGCCCTGGTCCAC < 41bp 0.779543960156611 0.477589716004628 0.32624632 0.05274543 prediction 0.559087920313221 Functional Loss - CIC ENSG00000079432 CDS Human protein_coding chr19:42791751 chr19:42791752 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_57993 0 0 1 0 1 CIC chr19:42791697 3'AG 42791697 Downstream 56bp
chr16 55525858 55525858 1 + G T UCEC 55525856 + 55525836 55525876 41 AGGATGACATCAAGGGCATTCAGGAGCTCTATGGTAAACCT AGGATGACATCAAGGGCATTCATGAGCTCTATGGTAAACCT < 41bp 0.865506998059817 0.585982980584634 0.8965527 0.32404512 prediction 0.559048034950365 Functional Loss - MMP2 ENSG00000087245 CDS Human protein_coding chr16:55525856 chr16:55525858 nonsynonymous SNV 0.953 3 23 hm5C_associated_SNPs_57996 0 0 0 0 1 MMP2 chr16:55525868 5'GT 55525868 Upstream 11bp
chr1 150315901 150315901 1 + G T COAD 150315898 + 150315878 150315918 41 AACTACAAGAAAAAGTCAGGCTGGGCCTGATGCCTCCTCCA AACTACAAGAAAAAGTCAGGCTGTGCCTGATGCCTCCTCCA < 41bp 0.779523987152817 0.396911864384273 0.1765998 0.054902375 prediction 0.559047974305635 Functional Loss - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150315898 chr1:150315901 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_57997 0 0 1 0 1 PRPF3 chr1:150315928 5'GT 150315928 Upstream 28bp
chr9 17787399 17787399 1 + G T LUSC 17787397 + 17787377 17787417 41 GGCCCAGCACTTGGTGAGGTCGGGGAGGCCATGCGGGAACT GGCCCAGCACTTGGTGAGGTCGTGGAGGCCATGCGGGAACT < 41bp 0.867323611998545 0.58780788995604 0.9115453 0.88584113 prediction 0.559031444085011 Functional Loss - SH3GL2 ENSG00000107295 CDS Human protein_coding chr9:17787397 chr9:17787399 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_57999 0 0 0 0 1 SH3GL2 chr9:17787378 3'AG 17787378 Downstream 22bp
chr16 8870281 8870281 1 + G T LUAD 8870279 + 8870259 8870299 41 AGGTCATCAACATCATCAAGCGGGAGGACCTGCTAAATAAT AGGTCATCAACATCATCAAGCGTGAGGACCTGCTAAATAAT < 41bp 0.779509804720189 0.440034968424485 0.5655169 0.16253683 prediction 0.559019609440378 Functional Loss - ABAT ENSG00000183044 CDS Human protein_coding chr16:8870279 chr16:8870281 synonymous SNV . 0 23 hm5C_associated_SNPs_58002 0 0 1 0 2 ABAT chr16:8870201 3'AG 8870201 Downstream 81bp
chr16 8870281 8870281 1 + G T LUAD 8870279 + 8870259 8870299 41 AGGTCATCAACATCATCAAGCGGGAGGACCTGCTAAATAAT AGGTCATCAACATCATCAAGCGTGAGGACCTGCTAAATAAT < 41bp 0.779509804720189 0.440034968424485 0.5655169 0.16253683 prediction 0.559019609440378 Functional Loss - ABAT ENSG00000183044 CDS Human protein_coding chr16:8870279 chr16:8870281 synonymous SNV . 0 23 hm5C_associated_SNPs_58002 0 0 1 0 2 ABAT chr16:8870347 5'GT 8870347 Upstream 67bp
chr17 48761112 48761112 1 + G C PRAD 48761111 + 48761091 48761131 41 AGTCTGCATGTGCACGGTGGCGAGAAGGTACGCGTGGGGTA AGTCTGCATGTGCACGGTGGCCAGAAGGTACGCGTGGGGTA < 41bp 0.80863309182434 0.529136959287134 0.891783 0.54714984 prediction 0.558992265074412 Functional Loss - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48761111 chr17:48761112 nonsynonymous SNV 0.718 5 22 hm5C_associated_SNPs_58004 0 0 1 0 1 ABCC3 chr17:48761117 5'GT 48761117 Upstream 6bp
chr11 2549230 2549230 1 + G C LUSC 2549229 + 2549209 2549249 41 GCAGTATGCCGCCCTGGCCACGGGGACTCTCTTCTGGATGG GCAGTATGCCGCCCTGGCCACCGGGACTCTCTTCTGGATGG < 41bp 0.779491294171719 0.484356901274138 0.93871725 0.9085357 prediction 0.558982588343437 Functional Loss - KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2549229 chr11:2549230 synonymous SNV . 0 22 hm5C_associated_SNPs_58005 0 0 0 0 1 KCNQ1 chr11:2549158 3'AG 2549158 Downstream 73bp
chr1 156836765 156836765 1 + G T UCEC 156836763 + 156836743 156836783 41 CTGTGCAGGGCCTCTCCTTACAGGAACTGTGAGTGGGGGCG CTGTGCAGGGCCTCTCCTTACATGAACTGTGAGTGGGGGCG < 41bp 0.870243325107753 0.59077198572684 0.9053857 0.7845061 prediction 0.558942678761827 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156836763 chr1:156836765 nonsynonymous SNV 0.936 0 23 hm5C_associated_SNPs_58008 0 0 0 0 2 NTRK1 chr1:156836702 3'AG 156836702 Downstream 64bp
chr1 156836765 156836765 1 + G T UCEC 156836763 + 156836743 156836783 41 CTGTGCAGGGCCTCTCCTTACAGGAACTGTGAGTGGGGGCG CTGTGCAGGGCCTCTCCTTACATGAACTGTGAGTGGGGGCG < 41bp 0.870243325107753 0.59077198572684 0.9053857 0.7845061 prediction 0.558942678761827 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156836763 chr1:156836765 nonsynonymous SNV 0.936 0 23 hm5C_associated_SNPs_58008 0 0 0 0 2 NTRK1 chr1:156836770 5'GT 156836770 Upstream 6bp
chr15 92647732 92647732 1 + G T HNSC 92647730 + 92647710 92647750 41 ACGGGGTCCTGAGGCACCCCCTGGAGCCAGACAGCAGTGCC ACGGGGTCCTGAGGCACCCCCTTGAGCCAGACAGCAGTGCC < 41bp 0.856984206506772 0.577514973562764 0.47951648 0.08888182 prediction 0.558938465888016 Functional Loss - SLCO3A1 ENSG00000176463 CDS Human protein_coding chr15:92647730 chr15:92647732 synonymous SNV . 0 23 hm5C_associated_SNPs_58009 0 0 0 1 1 SLCO3A1 chr15:92647772 5'GT 92647772 Upstream 41bp
chr10 95395327 95395327 1 + G T COAD 95395325 + 95395305 95395345 41 AAGATGAATAAGCTAGAAAACAGAAAGGACATTGCTCAGGA AAGATGAATAAGCTAGAAAACATAAAGGACATTGCTCAGGA < 41bp 0.77946061097718 0.468315283761989 0.13693202 0.05707991 prediction 0.55892122195436 Functional Loss - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95395325 chr10:95395327 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_58011 0 0 0 0 2 PDE6C chr10:95395254 3'AG 95395254 Downstream 74bp
chr10 95395327 95395327 1 + G T COAD 95395325 + 95395305 95395345 41 AAGATGAATAAGCTAGAAAACAGAAAGGACATTGCTCAGGA AAGATGAATAAGCTAGAAAACATAAAGGACATTGCTCAGGA < 41bp 0.77946061097718 0.468315283761989 0.13693202 0.05707991 prediction 0.55892122195436 Functional Loss - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95395325 chr10:95395327 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_58011 0 0 0 0 2 PDE6C chr10:95395397 5'GT 95395397 Upstream 71bp
chr12 57861148 57861148 1 + C T UCEC 57861146 + 57861126 57861166 41 GCCGGAAGTCATACTCACGCCTCGAAAACCTGAAGACGCAC GCCGGAAGTCATACTCACGCCTTGAAAACCTGAAGACGCAC < 41bp 0.779453640778767 0.495866440606562 0.9341893 0.24067655 prediction 0.558907281557534 Functional Loss - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57861146 chr12:57861148 synonymous SNV . 0 23 hm5C_associated_SNPs_58013 0 0 1 0 1 GLI1 chr12:57861116 3'AG 57861116 Downstream 33bp
chr11 66262853 66262853 1 + G T LUAD 66262851 + 66262831 66262871 41 TCCAGATTCAGAGCTGGTATCGGAGCGGGGAGACCTGGGAT TCCAGATTCAGAGCTGGTATCGTAGCGGGGAGACCTGGGAT < 41bp 0.779445609239184 0.432498466800845 0.9564145 0.9338872 prediction 0.558891218478368 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66262851 chr11:66262853 synonymous SNV . 0 23 hm5C_associated_SNPs_58016 0 0 1 0 1 DPP3 chr11:66262836 3'AG 66262836 Downstream 18bp
chr2 122522729 122522729 1 + G T SARC 122522727 + 122522707 122522747 41 CAGTCGAGGCTGTCTGTCAACAGCGTGACTGCTGGAGACTA CAGTCGAGGCTGTCTGTCAACATCGTGACTGCTGGAGACTA < 41bp 0.85147022191175 0.572032616468854 0.8102621 0.22090587 prediction 0.558875210885791 Functional Loss - TSN ENSG00000211460 CDS Human protein_coding chr2:122522727 chr2:122522729 nonsynonymous SNV 0.983 4 23 hm5C_associated_SNPs_58018 0 0 1 2 1 TSN chr2:122522710 3'AG 122522710 Downstream 20bp
chr3 129020936 129020936 1 + G T OV 129020933 + 129020913 129020953 41 CTCTTCTGTGGTGAACAACTCGCGAAACAACACTCCTGAGT CTCTTCTGTGGTGAACAACTCGCTAAACAACACTCCTGAGT < 41bp 0.896358830939445 0.61693073515555 0.7087132 0.3769489 prediction 0.55885619156779 Functional Loss - HMCES ENSG00000183624 CDS Human protein_coding chr3:129020933 chr3:129020936 nonsynonymous SNV 0.965 1 24 hm5C_associated_SNPs_58021 0 0 1 0 1 HMCES chr3:129020985 5'GT 129020985 Upstream 50bp
chr7 34889256 34889256 1 + G T UCEC 34889254 + 34889234 34889274 41 GATGCAGATTCTGTCCAAGCCAGAATTCATCTAGACCCTAG GATGCAGATTCTGTCCAAGCCATAATTCATCTAGACCCTAG < 41bp 0.830171939652429 0.550746750479042 0.7398025 0.25456434 prediction 0.558850378346773 Functional Loss - NPSR1 ENSG00000187258 CDS Human protein_coding chr7:34889254 chr7:34889256 stopgain 0.698 0 23 hm5C_associated_SNPs_58023 0 0 0 3 1 NPSR1 chr7:34889177 3'AG 34889177 Downstream 80bp
chr17 79952720 79952720 1 + G T ESCA 79952718 + 79952698 79952738 41 GAGTGCCTGCAGCACCCCGGCGGGGCCACCCCAGTCTGCGT GAGTGCCTGCAGCACCCCGGCGTGGCCACCCCAGTCTGCGT < 41bp 0.877496495277358 0.598076492066033 0.686064 0.35304728 prediction 0.558840006422648 Functional Loss - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79952718 chr17:79952720 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_58025 0 0 1 0 2 ASPSCR1 chr17:79952697 3'AG 79952697 Downstream 24bp
chr17 79952720 79952720 1 + G T ESCA 79952718 + 79952698 79952738 41 GAGTGCCTGCAGCACCCCGGCGGGGCCACCCCAGTCTGCGT GAGTGCCTGCAGCACCCCGGCGTGGCCACCCCAGTCTGCGT < 41bp 0.877496495277358 0.598076492066033 0.686064 0.35304728 prediction 0.558840006422648 Functional Loss - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79952718 chr17:79952720 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_58025 0 0 1 0 2 ASPSCR1 chr17:79952754 5'GT 79952754 Upstream 35bp
chrX 107304731 107304731 1 + G T UCEC 107304728 + 107304708 107304748 41 GTGTCTAAAAATGACGCACGCAAGAGACGCTCGGGGAAGAT GTGTCTAAAAATGACGCACGCAATAGACGCTCGGGGAAGAT < 41bp 0.779412357477795 0.405041818260853 0.55767673 0.18838665 prediction 0.55882471495559 Functional Loss - VSIG1 ENSG00000101842 CDS Human protein_coding chrX:107304728 chrX:107304731 nonsynonymous SNV 0.837 2 24 hm5C_associated_SNPs_58028 0 0 0 0 2 VSIG1 chrX:107304658 3'AG 107304658 Downstream 74bp
chrX 107304731 107304731 1 + G T UCEC 107304728 + 107304708 107304748 41 GTGTCTAAAAATGACGCACGCAAGAGACGCTCGGGGAAGAT GTGTCTAAAAATGACGCACGCAATAGACGCTCGGGGAAGAT < 41bp 0.779412357477795 0.405041818260853 0.55767673 0.18838665 prediction 0.55882471495559 Functional Loss - VSIG1 ENSG00000101842 CDS Human protein_coding chrX:107304728 chrX:107304731 nonsynonymous SNV 0.837 2 24 hm5C_associated_SNPs_58028 0 0 0 0 2 VSIG1 chrX:107304765 5'GT 107304765 Upstream 35bp
chr6 42883815 42883815 1 + G T LUAD 42883813 + 42883793 42883833 41 CCTTCCGAGTGGGCCATGGCCGGTACATGGCTGCTACTTCT CCTTCCGAGTGGGCCATGGCCGTTACATGGCTGCTACTTCT < 41bp 0.77939700722107 0.449413730977036 0.9011675 0.80045414 prediction 0.558794014442139 Functional Loss - PTCRA ENSG00000171611 CDS Human protein_coding chr6:42883813 chr6:42883815 nonsynonymous SNV 0.004 2 23 hm5C_associated_SNPs_58031 0 0 0 0 1 PTCRA chr6:42883865 5'GT 42883865 Upstream 51bp
chr19 42791299 42791299 1 + G T COAD 42791296 + 42791276 42791316 41 CCCTTTGGGGGTGGTGGAATCTGGTAAGGGTCCGCCTCCCA CCCTTTGGGGGTGGTGGAATCTGTTAAGGGTCCGCCTCCCA < 41bp 0.896459459275213 0.617068197770879 0.7572745 0.14323765 prediction 0.558782523008667 Functional Loss - CIC ENSG00000079432 CDS Human protein_coding chr19:42791296 chr19:42791299 nonsynonymous SNV 0.961 2 24 hm5C_associated_SNPs_58032 0 0 1 0 1 CIC chr19:42791392 5'GT 42791392 Upstream 94bp
chr1 109440662 109440662 1 + G T UCEC 109440659 + 109440639 109440679 41 GTTTTGGTTGCCCTGGTCCCCAGGATGTAGGAGAATTTCCA GTTTTGGTTGCCCTGGTCCCCAGTATGTAGGAGAATTTCCA < 41bp 0.887673995535649 0.608290389585983 0.7483349 0.2998806 prediction 0.558767211899332 Functional Loss - GPSM2 ENSG00000121957 CDS Human protein_coding chr1:109440659 chr1:109440662 nonsynonymous SNV 0.887 5 24 hm5C_associated_SNPs_58033 0 0 0 0 2 GPSM2 chr1:109440581 3'AG 109440581 Downstream 82bp
chr1 109440662 109440662 1 + G T UCEC 109440659 + 109440639 109440679 41 GTTTTGGTTGCCCTGGTCCCCAGGATGTAGGAGAATTTCCA GTTTTGGTTGCCCTGGTCCCCAGTATGTAGGAGAATTTCCA < 41bp 0.887673995535649 0.608290389585983 0.7483349 0.2998806 prediction 0.558767211899332 Functional Loss - GPSM2 ENSG00000121957 CDS Human protein_coding chr1:109440659 chr1:109440662 nonsynonymous SNV 0.887 5 24 hm5C_associated_SNPs_58033 0 0 0 0 2 GPSM2 chr1:109440723 5'GT 109440723 Upstream 62bp
chr19 50381799 50381799 1 + A T UCEC 50381795 + 50381775 50381815 41 CTGGGCTCCTGTAGAGGAGGCTGGAGATTCCACCCAAATCC CTGGGCTCCTGTAGAGGAGGCTGGTGATTCCACCCAAATCC < 41bp 0.827846274663356 0.548491386515222 0.7266741 0.61692786 prediction 0.558709776296268 Functional Loss - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50381795 chr19:50381799 synonymous SNV . 0 25 hm5C_associated_SNPs_58036 0 0 1 0 2 TBC1D17 chr19:50381755 3'AG 50381755 Downstream 45bp
chr19 50381799 50381799 1 + A T UCEC 50381795 + 50381775 50381815 41 CTGGGCTCCTGTAGAGGAGGCTGGAGATTCCACCCAAATCC CTGGGCTCCTGTAGAGGAGGCTGGTGATTCCACCCAAATCC < 41bp 0.827846274663356 0.548491386515222 0.7266741 0.61692786 prediction 0.558709776296268 Functional Loss - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50381795 chr19:50381799 synonymous SNV . 0 25 hm5C_associated_SNPs_58036 0 0 1 0 2 TBC1D17 chr19:50381829 5'GT 50381829 Upstream 31bp
chr17 78162243 78162243 1 + A T COAD 78162239 + 78162219 78162259 41 CCTCCTGTGAGCTGGAATTGCAAGAGCAGTCCCTGAGGACA CCTCCTGTGAGCTGGAATTGCAAGTGCAGTCCCTGAGGACA < 41bp 0.813255257513165 0.533902420984712 0.71967727 0.65021145 prediction 0.558705673056906 Functional Loss - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78162239 chr17:78162243 nonsynonymous SNV 0.084 2 25 hm5C_associated_SNPs_58037 0 0 0 0 1 CARD14 chr17:78162176 3'AG 78162176 Downstream 68bp
chr1 160093040 160093040 1 + G T LGG 160093037 + 160093017 160093057 41 GCGGGCTCAGGACGTTCTGGCTCGAGATGGGCCCAACGCCC GCGGGCTCAGGACGTTCTGGCTCTAGATGGGCCCAACGCCC < 41bp 0.901063196320049 0.621712062508115 0.24547237 0.851997 prediction 0.558702267623869 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160093037 chr1:160093040 nonsynonymous SNV 0.932 1 24 hm5C_associated_SNPs_58039 0 0 0 0 1 ATP1A2 chr1:160093003 3'AG 160093003 Downstream 38bp
chr1 193172942 193172942 1 + G T LUSC 193172940 + 193172920 193172960 41 TAAAGGAGGGTGCATCTGCCCGGAAGACTCAGACTCCTGCA TAAAGGAGGGTGCATCTGCCCGTAAGACTCAGACTCCTGCA < 41bp 0.847320988108131 0.567970029201461 0.30265832 0.13972372 prediction 0.55870191781334 Functional Loss - CDC73 ENSG00000134371 CDS Human protein_coding chr1:193172940 chr1:193172942 synonymous SNV . 0 23 hm5C_associated_SNPs_58040 0 0 1 0 2 CDC73 chr1:193172925 3'AG 193172925 Downstream 18bp
chr1 193172942 193172942 1 + G T LUSC 193172940 + 193172920 193172960 41 TAAAGGAGGGTGCATCTGCCCGGAAGACTCAGACTCCTGCA TAAAGGAGGGTGCATCTGCCCGTAAGACTCAGACTCCTGCA < 41bp 0.847320988108131 0.567970029201461 0.30265832 0.13972372 prediction 0.55870191781334 Functional Loss - CDC73 ENSG00000134371 CDS Human protein_coding chr1:193172940 chr1:193172942 synonymous SNV . 0 23 hm5C_associated_SNPs_58040 0 0 1 0 2 CDC73 chr1:193172982 5'GT 193172982 Upstream 41bp
chr4 3447936 3447936 1 + G C LUAD 3447935 + 3447915 3447955 41 GGCTCGCACCCCTGGCTGGCCGCCATCTACATCGGGGACAG GGCTCGCACCCCTGGCTGGCCCCCATCTACATCGGGGACAG < 41bp 0.814930147084667 0.535587251626635 0.1795533 0.053965926 prediction 0.558685790916066 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3447935 chr4:3447936 nonsynonymous SNV 0.993 5 22 hm5C_associated_SNPs_58041 0 0 1 0 1 HGFAC chr4:3448021 5'GT 3448021 Upstream 86bp
chr20 30616874 30616874 1 + G C LUSC 30616873 + 30616853 30616893 41 TTCCATGGCTCCCACTGCAGCGGCAGCGACCACAGCAGTCT TTCCATGGCTCCCACTGCAGCCGCAGCGACCACAGCAGTCT < 41bp 0.779336512431587 0.477971895368174 0.35033333 0.10960817 prediction 0.558673024863174 Functional Loss - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30616873 chr20:30616874 nonsynonymous SNV 0.281 0 22 hm5C_associated_SNPs_58043 0 0 0 0 2 CCM2L chr20:30616798 3'AG 30616798 Downstream 77bp
chr20 30616874 30616874 1 + G C LUSC 30616873 + 30616853 30616893 41 TTCCATGGCTCCCACTGCAGCGGCAGCGACCACAGCAGTCT TTCCATGGCTCCCACTGCAGCCGCAGCGACCACAGCAGTCT < 41bp 0.779336512431587 0.477971895368174 0.35033333 0.10960817 prediction 0.558673024863174 Functional Loss - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30616873 chr20:30616874 nonsynonymous SNV 0.281 0 22 hm5C_associated_SNPs_58043 0 0 0 0 2 CCM2L chr20:30616927 5'GT 30616927 Upstream 54bp
chr1 9779996 9779996 1 + G T COAD 9779993 + 9779973 9780013 41 CTGCAGGACTGCCCCATTGCCTGGGCCAACCTCATGCTGTT CTGCAGGACTGCCCCATTGCCTGTGCCAACCTCATGCTGTT < 41bp 0.779316485396332 0.38253312234757 0.9039117 0.32627368 prediction 0.558632970792663 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9779993 chr1:9779996 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_58046 0 0 1 0 2 PIK3CD chr1:9779979 3'AG 9779979 Downstream 18bp
chr1 9779996 9779996 1 + G T COAD 9779993 + 9779973 9780013 41 CTGCAGGACTGCCCCATTGCCTGGGCCAACCTCATGCTGTT CTGCAGGACTGCCCCATTGCCTGTGCCAACCTCATGCTGTT < 41bp 0.779316485396332 0.38253312234757 0.9039117 0.32627368 prediction 0.558632970792663 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9779993 chr1:9779996 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_58046 0 0 1 0 2 PIK3CD chr1:9780075 5'GT 9780075 Upstream 80bp
chr6 26459752 26459752 1 + G T UCEC 26459749 + 26459729 26459769 41 CCCACTGATCCCATCTTGGCCACGGTTGGAGAAAACACTAC CCCACTGATCCCATCTTGGCCACTGTTGGAGAAAACACTAC < 41bp 0.779312766437511 0.386710454412202 0.28785747 0.17406458 prediction 0.558625532875022 Functional Loss - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26459749 chr6:26459752 synonymous SNV . 0 24 hm5C_associated_SNPs_58047 0 0 1 0 1 BTN2A1 chr6:26459709 3'AG 26459709 Downstream 44bp
chrX 123499618 123499618 1 + G T UCEC 123499615 + 123499595 123499635 41 GTTTATTCTTTCACAGGTATCACGGTTACATTTATACATAC GTTTATTCTTTCACAGGTATCACTGTTACATTTATACATAC < 41bp 0.779301549562753 0.423129961377252 0.56563765 0.046204656 prediction 0.558603099125505 Functional Loss - SH2D1A ENSG00000183918 CDS Human protein_coding chrX:123499615 chrX:123499618 nonsynonymous SNV 0.987 5 24 hm5C_associated_SNPs_58049 0 0 0 0 2 SH2D1A chrX:123499611 3'AG 123499611 Downstream 8bp
chrX 123499618 123499618 1 + G T UCEC 123499615 + 123499595 123499635 41 GTTTATTCTTTCACAGGTATCACGGTTACATTTATACATAC GTTTATTCTTTCACAGGTATCACTGTTACATTTATACATAC < 41bp 0.779301549562753 0.423129961377252 0.56563765 0.046204656 prediction 0.558603099125505 Functional Loss - SH2D1A ENSG00000183918 CDS Human protein_coding chrX:123499615 chrX:123499618 nonsynonymous SNV 0.987 5 24 hm5C_associated_SNPs_58049 0 0 0 0 2 SH2D1A chrX:123499674 5'GT 123499674 Upstream 57bp
chr3 46939401 46939401 1 + G T STAD 46939399 + 46939379 46939419 41 GTGCTGGCCGCTGGGGGCACCAGGTGAGGTGGTGGCTGTGC GTGCTGGCCGCTGGGGGCACCATGTGAGGTGGTGGCTGTGC < 41bp 0.779301258986329 0.429007256334237 0.9231696 0.7859396 prediction 0.558602517972657 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46939399 chr3:46939401 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_58050 0 0 0 0 2 PTH1R chr3:46939345 3'AG 46939345 Downstream 57bp
chr3 46939401 46939401 1 + G T STAD 46939399 + 46939379 46939419 41 GTGCTGGCCGCTGGGGGCACCAGGTGAGGTGGTGGCTGTGC GTGCTGGCCGCTGGGGGCACCATGTGAGGTGGTGGCTGTGC < 41bp 0.779301258986329 0.429007256334237 0.9231696 0.7859396 prediction 0.558602517972657 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46939399 chr3:46939401 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_58050 0 0 0 0 2 PTH1R chr3:46939455 5'GT 46939455 Upstream 55bp
chr1 247597487 247597487 1 + G T LUSC 247597484 + 247597464 247597504 41 GCAACCAGAAGCTGGTGGAGCTGGACCTGAGTGACAACGCC GCAACCAGAAGCTGGTGGAGCTGTACCTGAGTGACAACGCC < 41bp 0.779275717874256 0.387505813410568 0.64207816 0.3848991 prediction 0.558551435748511 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247597484 chr1:247597487 nonsynonymous SNV 0.413 2 24 hm5C_associated_SNPs_58054 0 0 0 0 3 NLRP3 chr1:247597405 3'AG 247597405 Downstream 83bp
chr1 247597487 247597487 1 + G T LUSC 247597484 + 247597464 247597504 41 GCAACCAGAAGCTGGTGGAGCTGGACCTGAGTGACAACGCC GCAACCAGAAGCTGGTGGAGCTGTACCTGAGTGACAACGCC < 41bp 0.779275717874256 0.387505813410568 0.64207816 0.3848991 prediction 0.558551435748511 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247597484 chr1:247597487 nonsynonymous SNV 0.413 2 24 hm5C_associated_SNPs_58054 0 0 0 0 3 NLRP3 chr1:247597465 3'AG 247597465 Downstream 23bp
chr1 247597487 247597487 1 + G T LUSC 247597484 + 247597464 247597504 41 GCAACCAGAAGCTGGTGGAGCTGGACCTGAGTGACAACGCC GCAACCAGAAGCTGGTGGAGCTGTACCTGAGTGACAACGCC < 41bp 0.779275717874256 0.387505813410568 0.64207816 0.3848991 prediction 0.558551435748511 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247597484 chr1:247597487 nonsynonymous SNV 0.413 2 24 hm5C_associated_SNPs_58054 0 0 0 0 3 NLRP3 chr1:247597575 5'GT 247597575 Upstream 89bp
chr6 37225710 37225710 1 + G T SARC 37225708 + 37225688 37225728 41 AGAGCAATGGCCGCTGAGAACAGCAAGCAGTTTTGGAAGAG AGAGCAATGGCCGCTGAGAACATCAAGCAGTTTTGGAAGAG < 41bp 0.841519011757886 0.562250239799411 0.119021446 0.10669404 prediction 0.558537543916951 Functional Loss - TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37225708 chr6:37225710 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_58056 0 0 0 0 1 TBC1D22B chr6:37225749 5'GT 37225749 Upstream 40bp
chr19 56206162 56206162 1 + G T LUAD 56206159 + 56206139 56206179 41 GCGTTTGACATGAGTGGGGTCAGGGGATCTCTGGCTGAGGC GCGTTTGACATGAGTGGGGTCAGTGGATCTCTGGCTGAGGC < 41bp 0.898548170751254 0.61928221545646 0.91047424 0.5544713 prediction 0.558531910589587 Functional Loss - EPN1 ENSG00000063245 CDS Human protein_coding chr19:56206159 chr19:56206162 nonsynonymous SNV 0.988 0 24 hm5C_associated_SNPs_58059 0 0 1 0 1 EPN1 chr19:56206092 3'AG 56206092 Downstream 71bp
chr19 10793812 10793812 1 + G T SARC 10793810 + 10793790 10793830 41 TTTTCCCTGAGAACGTAAAACAGCAGGGGCCGATCCTGACA TTTTCCCTGAGAACGTAAAACATCAGGGGCCGATCCTGACA < 41bp 0.77924224775308 0.455063749484965 0.23997548 0.15814248 prediction 0.558484495506161 Functional Loss - ILF3;ILF3 ENSG00000129351;ENSG00000129351 exonic;splicing Human protein_coding chr19:10793810 chr19:10793812 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_58061 0 0 1 0 1 ILF3 chr19:10793801 3'AG 10793801 Downstream 12bp
chr8 66605984 66605984 1 + G T UCEC 66605982 + 66605962 66606002 41 CAAAGAAGAAGGAGAGTGTTCAGCAAGACTAAGGTTAGTTT CAAAGAAGAAGGAGAGTGTTCATCAAGACTAAGGTTAGTTT < 41bp 0.850506014479305 0.571301073705216 0.30417854 0.19554135 prediction 0.558409881548179 Functional Loss - MTFR1 ENSG00000066855 CDS Human protein_coding chr8:66605982 chr8:66605984 nonsynonymous SNV 0.428 0 23 hm5C_associated_SNPs_58063 0 0 1 0 1 MTFR1 chr8:66605994 5'GT 66605994 Upstream 11bp
chr10 115528619 115528619 1 + G T UCEC 115528617 + 115528597 115528637 41 CCTTCATGTCATCATTTCGCCAGGATATAAAAGCAACACAG CCTTCATGTCATCATTTCGCCATGATATAAAAGCAACACAG < 41bp 0.779200522187181 0.451956557325167 0.5221987 0.1630291 prediction 0.558401044374363 Functional Loss - PLEKHS1 ENSG00000148735 CDS Human protein_coding chr10:115528617 chr10:115528619 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_58066 0 0 0 0 2 PLEKHS1 chr10:115528574 3'AG 115528574 Downstream 46bp
chr10 115528619 115528619 1 + G T UCEC 115528617 + 115528597 115528637 41 CCTTCATGTCATCATTTCGCCAGGATATAAAAGCAACACAG CCTTCATGTCATCATTTCGCCATGATATAAAAGCAACACAG < 41bp 0.779200522187181 0.451956557325167 0.5221987 0.1630291 prediction 0.558401044374363 Functional Loss - PLEKHS1 ENSG00000148735 CDS Human protein_coding chr10:115528617 chr10:115528619 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_58066 0 0 0 0 2 PLEKHS1 chr10:115528649 5'GT 115528649 Upstream 31bp
chr4 88977281 88977281 1 + C T UCEC 88977279 + 88977259 88977299 41 AACAGGACCATGAGCCAGCTCTCGACAACCATGTCTCGATG AACAGGACCATGAGCCAGCTCTTGACAACCATGTCTCGATG < 41bp 0.779197685083091 0.487427529846264 0.13545239 0.017291844 prediction 0.558395370166182 Functional Loss - PKD2 ENSG00000118762 CDS Human protein_coding chr4:88977279 chr4:88977281 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_58067 0 0 1 0 1 PKD2 chr4:88977238 3'AG 88977238 Downstream 44bp
chr12 104100712 104100712 1 + G T LUAD 104100710 + 104100690 104100730 41 GAGTGTGGGGAGGGCTTCAGCGGCACAGCCTGCGAGACCTG GAGTGTGGGGAGGGCTTCAGCGTCACAGCCTGCGAGACCTG < 41bp 0.836836320362284 0.557677340840331 0.530593 0.18870369 prediction 0.558317959043905 Functional Loss - STAB2 ENSG00000136011 CDS Human protein_coding chr12:104100710 chr12:104100712 nonsynonymous SNV 0.022 5 23 hm5C_associated_SNPs_58072 0 0 0 0 1 STAB2 chr12:104100765 5'GT 104100765 Upstream 54bp
chr19 45562609 45562609 1 + G C LUAD 45562605 + 45562585 45562625 41 GCCACGACTTATGGCATGGCCGACGGTGACTTCGTCAGGTG GCCACGACTTATGGCATGGCCGACCGTGACTTCGTCAGGTG < 41bp 0.785184458499219 0.506036489817288 0.22593904 0.13410652 prediction 0.558295937363861 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45562605 chr19:45562609 nonsynonymous SNV 0.210 3 25 hm5C_associated_SNPs_58074 0 0 1 1 2 CLASRP chr19:45562526 3'AG 45562526 Downstream 84bp
chr19 45562609 45562609 1 + G C LUAD 45562605 + 45562585 45562625 41 GCCACGACTTATGGCATGGCCGACGGTGACTTCGTCAGGTG GCCACGACTTATGGCATGGCCGACCGTGACTTCGTCAGGTG < 41bp 0.785184458499219 0.506036489817288 0.22593904 0.13410652 prediction 0.558295937363861 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45562605 chr19:45562609 nonsynonymous SNV 0.210 3 25 hm5C_associated_SNPs_58074 0 0 1 1 2 CLASRP chr19:45562622 5'GT 45562622 Upstream 14bp
chr15 42704373 42704373 1 + G T UCEC 42704370 + 42704350 42704390 41 CACGCTGTCCCACCATGGGCCAGGAACCAAACCAGCACTGG CACGCTGTCCCACCATGGGCCAGTAACCAAACCAGCACTGG < 41bp 0.855016557889863 0.575870488200272 0.4176889 0.105995595 prediction 0.558292139379182 Functional Loss - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42704370 chr15:42704373 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_58075 0 0 0 0 1 CAPN3 chr15:42704284 3'AG 42704284 Downstream 90bp
chr12 21680708 21680708 1 + G C UCEC 21680707 + 21680687 21680727 41 AGCCGGAGAAAGGACCTCTCCGACCGGCCACTGCCGGGTGA AGCCGGAGAAAGGACCTCTCCCACCGGCCACTGCCGGGTGA < 41bp 0.779140807703576 0.473143670308652 0.23608947 0.13043109 prediction 0.558281615407151 Functional Loss - SPX ENSG00000134548 CDS Human protein_coding chr12:21680707 chr12:21680708 nonsynonymous SNV 0.110 3 22 hm5C_associated_SNPs_58078 0 0 1 4 2 SPX chr12:21680661 3'AG 21680661 Downstream 48bp
chr12 21680708 21680708 1 + G C UCEC 21680707 + 21680687 21680727 41 AGCCGGAGAAAGGACCTCTCCGACCGGCCACTGCCGGGTGA AGCCGGAGAAAGGACCTCTCCCACCGGCCACTGCCGGGTGA < 41bp 0.779140807703576 0.473143670308652 0.23608947 0.13043109 prediction 0.558281615407151 Functional Loss - SPX ENSG00000134548 CDS Human protein_coding chr12:21680707 chr12:21680708 nonsynonymous SNV 0.110 3 22 hm5C_associated_SNPs_58078 0 0 1 4 2 SPX chr12:21680723 5'GT 21680723 Upstream 16bp
chrX 140985237 140985237 1 + G T LUAD 140985234 + 140985214 140985254 41 TCATAAAGGGCAGCTGTGTCCCCGAGGAGGTCATCTGGGAA TCATAAAGGGCAGCTGTGTCCCCTAGGAGGTCATCTGGGAA < 41bp 0.779134840432284 0.40448336842607 0.2616219 0.048011184 prediction 0.558269680864567 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140985234 chrX:140985237 stopgain 0.000 0 24 hm5C_associated_SNPs_58080 0 0 0 0 1 MAGEC3 chrX:140985272 5'GT 140985272 Upstream 36bp
chr12 50867291 50867291 1 + C T CESC 50867289 + 50867269 50867309 41 ACTCAATATGAGTACCAGTTCTCCATGTGCTGCTGAGCTTA ACTCAATATGAGTACCAGTTCTTCATGTGCTGCTGAGCTTA < 41bp 0.783370166228521 0.504260900924033 0.9474614 0.55658054 prediction 0.558218530608975 Functional Loss - LARP4 ENSG00000161813 CDS Human protein_coding chr12:50867289 chr12:50867291 nonsynonymous SNV 0.015 0 23 hm5C_associated_SNPs_58086 0 0 1 0 2 LARP4 chr12:50867198 3'AG 50867198 Downstream 94bp
chr12 50867291 50867291 1 + C T CESC 50867289 + 50867269 50867309 41 ACTCAATATGAGTACCAGTTCTCCATGTGCTGCTGAGCTTA ACTCAATATGAGTACCAGTTCTTCATGTGCTGCTGAGCTTA < 41bp 0.783370166228521 0.504260900924033 0.9474614 0.55658054 prediction 0.558218530608975 Functional Loss - LARP4 ENSG00000161813 CDS Human protein_coding chr12:50867289 chr12:50867291 nonsynonymous SNV 0.015 0 23 hm5C_associated_SNPs_58086 0 0 1 0 2 LARP4 chr12:50867319 5'GT 50867319 Upstream 29bp
chr1 226016481 226016481 1 + G T LUSC 226016478 + 226016458 226016498 41 GTGCTGGGCTTTGCCATCTACTGGTTCATCTCCCGGGACAA GTGCTGGGCTTTGCCATCTACTGTTTCATCTCCCGGGACAA < 41bp 0.779100071972323 0.38557070946203 0.31576174 0.12007713 prediction 0.558200143944646 Functional Loss - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226016478 chr1:226016481 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_58087 0 0 1 0 1 EPHX1 chr1:226016426 3'AG 226016426 Downstream 56bp
chr1 162567644 162567644 1 + G T LGG 162567641 + 162567621 162567661 41 CTCTCCTCTTATCTCCTATGCTGGAGAAGTAAGTCTGCTTT CTCTCCTCTTATCTCCTATGCTGTAGAAGTAAGTCTGCTTT < 41bp 0.779094585396953 0.412410630629938 0.6247034 0.22443733 prediction 0.558189170793906 Functional Loss - UAP1 ENSG00000117143 CDS Human protein_coding chr1:162567641 chr1:162567644 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_58089 0 0 1 0 2 UAP1 chr1:162567582 3'AG 162567582 Downstream 63bp
chr1 162567644 162567644 1 + G T LGG 162567641 + 162567621 162567661 41 CTCTCCTCTTATCTCCTATGCTGGAGAAGTAAGTCTGCTTT CTCTCCTCTTATCTCCTATGCTGTAGAAGTAAGTCTGCTTT < 41bp 0.779094585396953 0.412410630629938 0.6247034 0.22443733 prediction 0.558189170793906 Functional Loss - UAP1 ENSG00000117143 CDS Human protein_coding chr1:162567641 chr1:162567644 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_58089 0 0 1 0 2 UAP1 chr1:162567648 5'GT 162567648 Upstream 5bp
chr11 6261902 6261902 1 + A C rs545343438 6261898 + 6261878 6261918 41 TGGTGAAGAAGTACATGAAGCTGCAGCACGTCAACCGCAAG TGGTGAAGAAGTACATGAAGCTGCCGCACGTCAACCGCAAG < 41bp 0.779092498297421 0.364014525912781 0.2101214 0.21365154 prediction 0.558184996594843 Functional Loss - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6261898 chr11:6261902 nonsynonymous SNV 0.906 3 25 hm5C_associated_SNPs_58090 0 0 0 0 2 CNGA4 chr11:6261869 3'AG 6261869 Downstream 34bp
chr11 6261902 6261902 1 + A C rs545343438 6261898 + 6261878 6261918 41 TGGTGAAGAAGTACATGAAGCTGCAGCACGTCAACCGCAAG TGGTGAAGAAGTACATGAAGCTGCCGCACGTCAACCGCAAG < 41bp 0.779092498297421 0.364014525912781 0.2101214 0.21365154 prediction 0.558184996594843 Functional Loss - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6261898 chr11:6261902 nonsynonymous SNV 0.906 3 25 hm5C_associated_SNPs_58090 0 0 0 0 2 CNGA4 chr11:6261941 5'GT 6261941 Upstream 40bp
chr15 20490520 20490520 1 + G T UCEC 20490517 + 20490497 20490537 41 GCTTCAGCTCTGGACCTTGTCAAGAAGTTGTTGGTAGTGGA GCTTCAGCTCTGGACCTTGTCAATAAGTTGTTGGTAGTGGA < 41bp 0.779075407528319 0.42258241379049 0.36990047 0.047415853 prediction 0.558150815056639 Functional Loss - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20490517 chr15:20490520 . . 0 24 hm5C_associated_SNPs_58094 0 0 0 0 2 CHEK2P2 chr15:20490504 3'AG 20490504 Downstream 17bp
chr15 20490520 20490520 1 + G T UCEC 20490517 + 20490497 20490537 41 GCTTCAGCTCTGGACCTTGTCAAGAAGTTGTTGGTAGTGGA GCTTCAGCTCTGGACCTTGTCAATAAGTTGTTGGTAGTGGA < 41bp 0.779075407528319 0.42258241379049 0.36990047 0.047415853 prediction 0.558150815056639 Functional Loss - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20490517 chr15:20490520 . . 0 24 hm5C_associated_SNPs_58094 0 0 0 0 2 CHEK2P2 chr15:20490588 5'GT 20490588 Upstream 69bp
chr5 137708510 137708510 1 + A T LUAD 137708506 + 137708486 137708526 41 CTTCTCCAGGGCATTCGAGTCTCCATTGCACAATGGCCAGC CTTCTCCAGGGCATTCGAGTCTCCTTTGCACAATGGCCAGC < 41bp 0.779063487098036 0.428133264744044 0.9664202 0.2389484 prediction 0.558126974196071 Functional Loss - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137708506 chr5:137708510 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_58096 0 0 1 0 1 KDM3B chr5:137708530 5'GT 137708530 Upstream 21bp
chr2 48687006 48687006 1 + G T UCEC 48687004 + 48686984 48687024 41 CTGTGGTTGACGGTCTCACCCGGAAGTACATGGAAACCATT CTGTGGTTGACGGTCTCACCCGTAAGTACATGGAAACCATT < 41bp 0.858261290671369 0.579198939447908 0.88619924 0.12552562 prediction 0.558124702446922 Functional Loss - PPP1R21 ENSG00000162869 CDS Human protein_coding chr2:48687004 chr2:48687006 synonymous SNV . 0 23 hm5C_associated_SNPs_58097 0 0 1 0 1 PPP1R21 chr2:48687057 5'GT 48687057 Upstream 52bp
chr21 42613864 42613864 1 + G T COAD 42613862 + 42613842 42613882 41 GTTGCTGGATCTGGGACCAACGGAGGTAGTCTTGTGGGTAT GTTGCTGGATCTGGGACCAACGTAGGTAGTCTTGTGGGTAT < 41bp 0.779059796265159 0.44204407283373 0.9015651 0.82623744 prediction 0.558119592530318 Functional Loss - BACE2 ENSG00000182240 CDS Human protein_coding chr21:42613862 chr21:42613864 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_58098 0 0 0 0 1 BACE2 chr21:42613874 5'GT 42613874 Upstream 11bp
chr11 7081289 7081289 1 + A T LUAD 7081285 + 7081265 7081305 41 GGCATCCAAGCTGTAATCTTCAGGACTTGGAGTAGGTTTTC GGCATCCAAGCTGTAATCTTCAGGTCTTGGAGTAGGTTTTC < 41bp 0.779055367157817 0.474249235338748 0.60019785 0.6533955 prediction 0.558110734315633 Functional Loss - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7081285 chr11:7081289 nonsynonymous SNV 0.991 1 25 hm5C_associated_SNPs_58099 0 0 0 0 1 NLRP14 chr11:7081295 5'GT 7081295 Upstream 7bp
chr11 7081288 7081288 1 + G T LUAD 7081285 + 7081265 7081305 41 GGCATCCAAGCTGTAATCTTCAGGACTTGGAGTAGGTTTTC GGCATCCAAGCTGTAATCTTCAGTACTTGGAGTAGGTTTTC < 41bp 0.779055367157817 0.407741577200514 0.60019785 0.34060577 prediction 0.558110734315633 Functional Loss - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7081285 chr11:7081288 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_58100 0 0 0 0 1 NLRP14 chr11:7081295 5'GT 7081295 Upstream 8bp
chr2 190708728 190708728 1 + G T LIHC 190708725 + 190708705 190708745 41 AAAAGCAGAGTATCAGATCACAAGATGGCTCTCATGTCAGT AAAAGCAGAGTATCAGATCACAATATGGCTCTCATGTCAGT < 41bp 0.779035127570112 0.43993267603422 0.5330144 0.20272002 prediction 0.558070255140225 Functional Loss - PMS1 ENSG00000064933 CDS Human protein_coding chr2:190708725 chr2:190708728 nonsynonymous SNV 0.992 3 24 hm5C_associated_SNPs_58103 0 0 1 0 1 PMS1 chr2:190708806 5'GT 190708806 Upstream 79bp
chr8 8875864 8875864 1 + A T PAAD 8875860 + 8875840 8875880 41 GTACTAAAAAAAGTAATTGACTGGATGAAATTGAAGGAATT GTACTAAAAAAAGTAATTGACTGGTTGAAATTGAAGGAATT < 41bp 0.779026324648669 0.466771366597759 0.4230969 0.38220236 prediction 0.558052649297337 Functional Loss - ERI1 ENSG00000104626 CDS Human protein_coding chr8:8875860 chr8:8875864 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_58105 0 0 1 0 2 ERI1 chr8:8875807 3'AG 8875807 Downstream 58bp
chr8 8875864 8875864 1 + A T PAAD 8875860 + 8875840 8875880 41 GTACTAAAAAAAGTAATTGACTGGATGAAATTGAAGGAATT GTACTAAAAAAAGTAATTGACTGGTTGAAATTGAAGGAATT < 41bp 0.779026324648669 0.466771366597759 0.4230969 0.38220236 prediction 0.558052649297337 Functional Loss - ERI1 ENSG00000104626 CDS Human protein_coding chr8:8875860 chr8:8875864 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_58105 0 0 1 0 2 ERI1 chr8:8875916 5'GT 8875916 Upstream 53bp
chr15 40565791 40565791 1 + A C LUSC 40565787 + 40565767 40565807 41 TTCGGATTCTGTGCTCAGATCAGCAAAGACGTCCCTAAGAG TTCGGATTCTGTGCTCAGATCAGCCAAGACGTCCCTAAGAG < 41bp 0.77901080538011 0.357346312075093 0.26295176 0.15953457 prediction 0.55802161076022 Functional Loss - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40565787 chr15:40565791 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_58109 0 0 0 0 2 BUB1B-PAK6;PAK6 chr15:40565752 3'AG 40565752 Downstream 40bp
chr15 40565791 40565791 1 + A C LUSC 40565787 + 40565767 40565807 41 TTCGGATTCTGTGCTCAGATCAGCAAAGACGTCCCTAAGAG TTCGGATTCTGTGCTCAGATCAGCCAAGACGTCCCTAAGAG < 41bp 0.77901080538011 0.357346312075093 0.26295176 0.15953457 prediction 0.55802161076022 Functional Loss - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40565787 chr15:40565791 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_58109 0 0 0 0 2 BUB1B-PAK6;PAK6 chr15:40565877 5'GT 40565877 Upstream 87bp
chr19 45303674 45303674 1 + G T UCEC 45303671 + 45303651 45303691 41 GGAACTCCCCTCCAGCTGCGCTGGGACCCCAGGACCCTGCC GGAACTCCCCTCCAGCTGCGCTGTGACCCCAGGACCCTGCC < 41bp 0.778997119684137 0.38085180417649 0.68574977 0.2194896 prediction 0.557994239368274 Functional Loss - CBLC ENSG00000142273 CDS Human protein_coding chr19:45303671 chr19:45303674 stopgain 0.001 0 24 hm5C_associated_SNPs_58110 0 0 0 0 2 CBLC chr19:45303638 3'AG 45303638 Downstream 37bp
chr19 45303674 45303674 1 + G T UCEC 45303671 + 45303651 45303691 41 GGAACTCCCCTCCAGCTGCGCTGGGACCCCAGGACCCTGCC GGAACTCCCCTCCAGCTGCGCTGTGACCCCAGGACCCTGCC < 41bp 0.778997119684137 0.38085180417649 0.68574977 0.2194896 prediction 0.557994239368274 Functional Loss - CBLC ENSG00000142273 CDS Human protein_coding chr19:45303671 chr19:45303674 stopgain 0.001 0 24 hm5C_associated_SNPs_58110 0 0 0 0 2 CBLC chr19:45303707 5'GT 45303707 Upstream 34bp
chr3 53837571 53837571 1 + G C LGG 53837570 + 53837550 53837590 41 TTCAGTAGTGAGGAATGCTACGAGGATGACAGCTCGCCCAC TTCAGTAGTGAGGAATGCTACCAGGATGACAGCTCGCCCAC < 41bp 0.778988872628161 0.48960843490407 0.8985709 0.8602218 prediction 0.557977745256323 Functional Loss - CACNA1D ENSG00000157388 CDS Human protein_coding chr3:53837570 chr3:53837571 nonsynonymous SNV 0.896 2 22 hm5C_associated_SNPs_58112 0 0 0 0 1 CACNA1D chr3:53837599 5'GT 53837599 Upstream 29bp
chr3 11070485 11070485 1 + G T LUSC 11070482 + 11070462 11070502 41 CAGCTGCCTATCTCCCCACTCTGGGCCATCCTCTTCTTCTC CAGCTGCCTATCTCCCCACTCTGTGCCATCCTCTTCTTCTC < 41bp 0.778979293847988 0.378488084993527 0.8943141 0.36954412 prediction 0.557958587695975 Functional Loss - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11070482 chr3:11070485 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_58114 0 0 1 0 2 SLC6A1 chr3:11070421 3'AG 11070421 Downstream 65bp
chr3 11070485 11070485 1 + G T LUSC 11070482 + 11070462 11070502 41 CAGCTGCCTATCTCCCCACTCTGGGCCATCCTCTTCTTCTC CAGCTGCCTATCTCCCCACTCTGTGCCATCCTCTTCTTCTC < 41bp 0.778979293847988 0.378488084993527 0.8943141 0.36954412 prediction 0.557958587695975 Functional Loss - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11070482 chr3:11070485 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_58114 0 0 1 0 2 SLC6A1 chr3:11070533 5'GT 11070533 Upstream 49bp
chr2 113346512 113346512 1 + A C rs1047652 113346508 + 113346488 113346528 41 AACTGGACATGAATGACTGCCCCCACGCCCCTCCCCTGCAG AACTGGACATGAATGACTGCCCCCCCGCCCCTCCCCTGCAG < 41bp 0.778965230770798 0.433076162587371 0.08305931 0.032292217 prediction 0.557930461541596 Functional Loss - CHCHD5 ENSG00000125611 UTR3 Human protein_coding chr2:113346508 chr2:113346512 . . 0 25 hm5C_associated_SNPs_58116 0 0 1 0 1 CHCHD5 chr2:113346443 3'AG 113346443 Downstream 70bp
chr16 2577951 2577951 1 + G T LUSC 2577949 + 2577929 2577969 41 GGCCGTAGCCACGAAGTGATCCGGGCGCTGACGGCCCGTGG GGCCGTAGCCACGAAGTGATCCTGGCGCTGACGGCCCGTGG < 41bp 0.876188839807079 0.597227911934802 0.9384947 0.90051156 prediction 0.557921855744555 Functional Loss - AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human protein_coding chr16:2577949 chr16:2577951 nonsynonymous SNV 0.266 0 23 hm5C_associated_SNPs_58117 0 0 1 0 1 AMDHD2 chr16:2577986 5'GT 2577986 Upstream 36bp
chr16 84449126 84449126 1 + G T UCEC 84449123 + 84449103 84449143 41 AACTCCAGCACCTGCTTGCTCGAGAACTGGTTCCTGGTGAT AACTCCAGCACCTGCTTGCTCGATAACTGGTTCCTGGTGAT < 41bp 0.778957870002093 0.380693088686421 0.53298455 0.17638114 prediction 0.557915740004185 Functional Loss - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84449123 chr16:84449126 stopgain 0.668 0 24 hm5C_associated_SNPs_58118 0 0 0 0 2 ATP2C2 chr16:84449089 3'AG 84449089 Downstream 38bp
chr16 84449126 84449126 1 + G T UCEC 84449123 + 84449103 84449143 41 AACTCCAGCACCTGCTTGCTCGAGAACTGGTTCCTGGTGAT AACTCCAGCACCTGCTTGCTCGATAACTGGTTCCTGGTGAT < 41bp 0.778957870002093 0.380693088686421 0.53298455 0.17638114 prediction 0.557915740004185 Functional Loss - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84449123 chr16:84449126 stopgain 0.668 0 24 hm5C_associated_SNPs_58118 0 0 0 0 2 ATP2C2 chr16:84449197 5'GT 84449197 Upstream 72bp
chr1 32713983 32713983 1 + G T PRAD 32713981 + 32713961 32714001 41 CTCGGCCGCAGCGGGAGATGCAGGCGCAGGACAGGCAGCTG CTCGGCCGCAGCGGGAGATGCATGCGCAGGACAGGCAGCTG < 41bp 0.845316791355033 0.566364752719834 0.91580784 0.3429365 prediction 0.557904077270397 Functional Loss - FAM167B ENSG00000183615 CDS Human protein_coding chr1:32713981 chr1:32713983 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_58119 0 0 0 0 1 FAM167B chr1:32713972 3'AG 32713972 Downstream 12bp
chr13 24895231 24895231 1 + G T BLCA 24895228 + 24895208 24895248 41 CCCAAGGGGCTTGCAGGGCCCATGGGAGAGAAGGGCCTCCG CCCAAGGGGCTTGCAGGGCCCATTGGAGAGAAGGGCCTCCG < 41bp 0.778895907294273 0.394985003393928 0.4633753 0.21694395 prediction 0.557791814588547 Functional Loss - C1QTNF9 ENSG00000240654 CDS Human protein_coding chr13:24895228 chr13:24895231 nonsynonymous SNV 0.565 1 24 hm5C_associated_SNPs_58124 0 0 0 0 1 C1QTNF9 chr13:24895134 3'AG 24895134 Downstream 98bp
chr4 48835468 48835468 1 + G T UCEC 48835466 + 48835446 48835486 41 GGAAGAAAGGAGAGTCTTCGCAGAATGCAATGATGAAAGCT GGAAGAAAGGAGAGTCTTCGCATAATGCAATGATGAAAGCT < 41bp 0.840020522422998 0.561134241380421 0.2727723 0.32984513 prediction 0.557772562085153 Functional Loss - OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48835466 chr4:48835468 stopgain 0.977 1 23 hm5C_associated_SNPs_58127 0 0 1 6 2 OCIAD1 chr4:48835418 3'AG 48835418 Downstream 51bp
chr4 48835468 48835468 1 + G T UCEC 48835466 + 48835446 48835486 41 GGAAGAAAGGAGAGTCTTCGCAGAATGCAATGATGAAAGCT GGAAGAAAGGAGAGTCTTCGCATAATGCAATGATGAAAGCT < 41bp 0.840020522422998 0.561134241380421 0.2727723 0.32984513 prediction 0.557772562085153 Functional Loss - OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48835466 chr4:48835468 stopgain 0.977 1 23 hm5C_associated_SNPs_58127 0 0 1 6 2 OCIAD1 chr4:48835498 5'GT 48835498 Upstream 31bp
chr19 10398371 10398371 1 + G T SARC 10398369 + 10398349 10398389 41 GAAAGCCTGGAGCGCTTCACCGGCCTGGATCTGGCCAACGT GAAAGCCTGGAGCGCTTCACCGTCCTGGATCTGGCCAACGT < 41bp 0.842903099207272 0.564019539665117 0.30621055 0.2834432 prediction 0.55776711908431 Functional Loss - ICAM4 ENSG00000105371 CDS Human protein_coding chr19:10398369 chr19:10398371 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_58128 0 0 1 0 1 ICAM4 chr19:10398289 3'AG 10398289 Downstream 83bp
chr3 183899959 183899959 1 + G T CESC 183899957 + 183899937 183899977 41 AGGTGAGGATCCCAACCCCACTGAACACAAGCGGGGTGCAG AGGTGAGGATCCCAACCCCACTTAACACAAGCGGGGTGCAG < 41bp 0.778879307030566 0.444451060279219 0.4095892 0.10151988 prediction 0.557758614061131 Functional Loss - AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899957 chr3:183899959 synonymous SNV . 0 23 hm5C_associated_SNPs_58129 0 0 1 0 2 AP2M1 chr3:183899939 3'AG 183899939 Downstream 21bp
chr3 183899959 183899959 1 + G T CESC 183899957 + 183899937 183899977 41 AGGTGAGGATCCCAACCCCACTGAACACAAGCGGGGTGCAG AGGTGAGGATCCCAACCCCACTTAACACAAGCGGGGTGCAG < 41bp 0.778879307030566 0.444451060279219 0.4095892 0.10151988 prediction 0.557758614061131 Functional Loss - AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899957 chr3:183899959 synonymous SNV . 0 23 hm5C_associated_SNPs_58129 0 0 1 0 2 AP2M1 chr3:183900036 5'GT 183900036 Upstream 78bp
chr3 44409182 44409182 1 + G T SARC 44409179 + 44409159 44409199 41 TGAAGACCTTGAACAAGTCTCGAGAGTGGAAACAACTCTCA TGAAGACCTTGAACAAGTCTCGATAGTGGAAACAACTCTCA < 41bp 0.870386952242907 0.591513079780726 0.70086884 0.2436704 prediction 0.557747744924363 Functional Loss - TCAIM ENSG00000179152 CDS Human protein_coding chr3:44409179 chr3:44409182 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_58130 0 0 0 0 1 TCAIM chr3:44409200 5'GT 44409200 Upstream 19bp
chr19 50149816 50149816 1 + G T LUAD 50149814 + 50149794 50149834 41 GGCCACGGACAGCTTCCTCGCAGGGCTGGTGAGTGTCCTGG GGCCACGGACAGCTTCCTCGCATGGCTGGTGAGTGTCCTGG < 41bp 0.873865757098104 0.594995122710035 0.91893184 0.4074025 prediction 0.557741268776139 Functional Loss - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50149814 chr19:50149816 nonsynonymous SNV 0.572 3 23 hm5C_associated_SNPs_58131 0 0 1 0 2 SCAF1 chr19:50149783 3'AG 50149783 Downstream 34bp
chr19 50149816 50149816 1 + G T LUAD 50149814 + 50149794 50149834 41 GGCCACGGACAGCTTCCTCGCAGGGCTGGTGAGTGTCCTGG GGCCACGGACAGCTTCCTCGCATGGCTGGTGAGTGTCCTGG < 41bp 0.873865757098104 0.594995122710035 0.91893184 0.4074025 prediction 0.557741268776139 Functional Loss - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50149814 chr19:50149816 nonsynonymous SNV 0.572 3 23 hm5C_associated_SNPs_58131 0 0 1 0 2 SCAF1 chr19:50149883 5'GT 50149883 Upstream 68bp
chr19 1080311 1080311 1 + G C rs2074454 1080310 + 1080290 1080330 41 CGTGAGTGATGTGGCGCGGCCGGAGGCTGCCGGGAGCCCCC CGTGAGTGATGTGGCGCGGCCCGAGGCTGCCGGGAGCCCCC < 41bp 0.822792357971805 0.543927564965604 0.88540196 0.45934772 prediction 0.557729586012401 Functional Loss - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1080310 chr19:1080311 synonymous SNV . 0 22 hm5C_associated_SNPs_58132 0 0 1 0 2 ARHGAP45 chr19:1080254 3'AG 1080254 Downstream 58bp
chr19 1080311 1080311 1 + G C rs2074454 1080310 + 1080290 1080330 41 CGTGAGTGATGTGGCGCGGCCGGAGGCTGCCGGGAGCCCCC CGTGAGTGATGTGGCGCGGCCCGAGGCTGCCGGGAGCCCCC < 41bp 0.822792357971805 0.543927564965604 0.88540196 0.45934772 prediction 0.557729586012401 Functional Loss - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1080310 chr19:1080311 synonymous SNV . 0 22 hm5C_associated_SNPs_58132 0 0 1 0 2 ARHGAP45 chr19:1080378 5'GT 1080378 Upstream 68bp
chr6 161528980 161528980 1 + G T UCEC 161528977 + 161528957 161528997 41 ACCTGCATCAGCGTCGACACCGGGGAGCTGATGGCCATGAA ACCTGCATCAGCGTCGACACCGGTGAGCTGATGGCCATGAA < 41bp 0.898793125785105 0.619930733688639 0.89669347 0.7471621 prediction 0.557724784192932 Functional Loss - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161528977 chr6:161528980 synonymous SNV . 0 24 hm5C_associated_SNPs_58134 0 0 1 0 2 MAP3K4 chr6:161528931 3'AG 161528931 Downstream 50bp
chr6 161528980 161528980 1 + G T UCEC 161528977 + 161528957 161528997 41 ACCTGCATCAGCGTCGACACCGGGGAGCTGATGGCCATGAA ACCTGCATCAGCGTCGACACCGGTGAGCTGATGGCCATGAA < 41bp 0.898793125785105 0.619930733688639 0.89669347 0.7471621 prediction 0.557724784192932 Functional Loss - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161528977 chr6:161528980 synonymous SNV . 0 24 hm5C_associated_SNPs_58134 0 0 1 0 2 MAP3K4 chr6:161529001 5'GT 161529001 Upstream 22bp
chr15 75562501 75562501 1 + G T GBM 75562499 + 75562479 75562519 41 CCCATGACAACCCCCCGGTACAGCAGATCGTGCAGCTGTCT CCCATGACAACCCCCCGGTACATCAGATCGTGCAGCTGTCT < 41bp 0.778852961435172 0.453166792614528 0.17459619 0.050887853 prediction 0.557705922870344 Functional Loss - GOLGA6C ENSG00000167195 CDS Human protein_coding chr15:75562499 chr15:75562501 nonsynonymous SNV 0.010 3 23 hm5C_associated_SNPs_58139 0 0 0 0 1 GOLGA6C chr15:75562413 3'AG 75562413 Downstream 89bp
chr15 90138744 90138744 1 + A T CESC 90138740 + 90138720 90138760 41 AGTTACATCCAGATGGCAGTCCGGATGTGGCTGGGGAGAAA AGTTACATCCAGATGGCAGTCCGGTTGTGGCTGGGGAGAAA < 41bp 0.778850899309279 0.459140712109641 0.44388422 0.21362051 prediction 0.557701798618558 Functional Loss - TICRR ENSG00000140534 CDS Human protein_coding chr15:90138740 chr15:90138744 nonsynonymous SNV 0.021 2 25 hm5C_associated_SNPs_58140 0 0 1 0 1 TICRR chr15:90138842 5'GT 90138842 Upstream 99bp
chr5 172395551 172395551 1 + G T UCEC 172395549 + 172395529 172395569 41 TCATCTACATCGAGCGGGTGCAGCGTGAGAAGGCCAACGGC TCATCTACATCGAGCGGGTGCATCGTGAGAAGGCCAACGGC < 41bp 0.856326636348994 0.57747708343053 0.32948416 0.08386135 prediction 0.55769910583693 Functional Loss - RPL26L1 ENSG00000037241 CDS Human protein_coding chr5:172395549 chr5:172395551 nonsynonymous SNV 0.979 0 23 hm5C_associated_SNPs_58141 0 0 1 0 2 RPL26L1 chr5:172395462 3'AG 172395462 Downstream 90bp
chr5 172395551 172395551 1 + G T UCEC 172395549 + 172395529 172395569 41 TCATCTACATCGAGCGGGTGCAGCGTGAGAAGGCCAACGGC TCATCTACATCGAGCGGGTGCATCGTGAGAAGGCCAACGGC < 41bp 0.856326636348994 0.57747708343053 0.32948416 0.08386135 prediction 0.55769910583693 Functional Loss - RPL26L1 ENSG00000037241 CDS Human protein_coding chr5:172395549 chr5:172395551 nonsynonymous SNV 0.979 0 23 hm5C_associated_SNPs_58141 0 0 1 0 2 RPL26L1 chr5:172395602 5'GT 172395602 Upstream 52bp
chr5 131822308 131822308 1 - C A UCEC 131822310 - 131822290 131822330 41 TCCACTCTGCCTGATGACCACAGCAGCTACACAGTTCCAGG TCCACTCTGCCTGATGACCACATCAGCTACACAGTTCCAGG < 41bp 0.778835182366552 0.435758116787376 0.276928 0.06377062 prediction 0.557670364733105 Functional Loss - IRF1 ENSG00000125347 CDS Human protein_coding chr5:131822310 chr5:131822308 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_58142 0 0 1 0 2 IRF1 chr5:131822249 5'GT 131822249 Upstream 60bp
chr5 131822308 131822308 1 - C A UCEC 131822310 - 131822290 131822330 41 TCCACTCTGCCTGATGACCACAGCAGCTACACAGTTCCAGG TCCACTCTGCCTGATGACCACATCAGCTACACAGTTCCAGG < 41bp 0.778835182366552 0.435758116787376 0.276928 0.06377062 prediction 0.557670364733105 Functional Loss - IRF1 ENSG00000125347 CDS Human protein_coding chr5:131822310 chr5:131822308 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_58142 0 0 1 0 2 IRF1 chr5:131822378 3'AG 131822378 Downstream 71bp
chr10 45877968 45877968 1 + G C LUAD 45877964 + 45877944 45877984 41 ACGTGACTGTGGACGAGGAACTGGGCGAGATCCAGCTGGTC ACGTGACTGTGGACGAGGAACTGGCCGAGATCCAGCTGGTC < 41bp 0.798519400648009 0.519684475655573 0.888337 0.2641479 prediction 0.557669849984872 Functional Loss - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45877964 chr10:45877968 nonsynonymous SNV 0.976 4 25 hm5C_associated_SNPs_58143 0 0 1 0 1 ALOX5 chr10:45877931 3'AG 45877931 Downstream 38bp
chr12 124156113 124156113 1 + G C LUSC 124156109 + 124156089 124156129 41 GCGGTCAGCGCGTCCCTGGTCGGAGACACCGAGGGTGTGAC GCGGTCAGCGCGTCCCTGGTCGGACACACCGAGGGTGTGAC < 41bp 0.778812066839126 0.493744790282562 0.9035113 0.7332202 prediction 0.557624133678252 Functional Loss - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124156109 chr12:124156113 nonsynonymous SNV 0.126 1 25 hm5C_associated_SNPs_58145 0 0 1 0 2 TCTN2 chr12:124156054 3'AG 124156054 Downstream 60bp
chr12 124156113 124156113 1 + G C LUSC 124156109 + 124156089 124156129 41 GCGGTCAGCGCGTCCCTGGTCGGAGACACCGAGGGTGTGAC GCGGTCAGCGCGTCCCTGGTCGGACACACCGAGGGTGTGAC < 41bp 0.778812066839126 0.493744790282562 0.9035113 0.7332202 prediction 0.557624133678252 Functional Loss - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124156109 chr12:124156113 nonsynonymous SNV 0.126 1 25 hm5C_associated_SNPs_58145 0 0 1 0 2 TCTN2 chr12:124156161 5'GT 124156161 Upstream 49bp
chr17 27576179 27576179 1 + G T UCEC 27576176 + 27576156 27576196 41 CCAGAAACCCTTCCAACCACCAAGATGGCTCAGACCAACCC CCAGAAACCCTTCCAACCACCAATATGGCTCAGACCAACCC < 41bp 0.896252669186054 0.617440735078331 0.2872324 0.017783314 prediction 0.557623868215446 Functional Loss - CRYBA1 ENSG00000108255 CDS Human protein_coding chr17:27576176 chr17:27576179 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_58146 0 0 0 0 2 CRYBA1 chr17:27576160 3'AG 27576160 Downstream 20bp
chr17 27576179 27576179 1 + G T UCEC 27576176 + 27576156 27576196 41 CCAGAAACCCTTCCAACCACCAAGATGGCTCAGACCAACCC CCAGAAACCCTTCCAACCACCAATATGGCTCAGACCAACCC < 41bp 0.896252669186054 0.617440735078331 0.2872324 0.017783314 prediction 0.557623868215446 Functional Loss - CRYBA1 ENSG00000108255 CDS Human protein_coding chr17:27576176 chr17:27576179 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_58146 0 0 0 0 2 CRYBA1 chr17:27576224 5'GT 27576224 Upstream 46bp
chr19 54969154 54969154 1 + G T LUAD 54969151 + 54969131 54969171 41 GAGTTCACGGTGGAGGTGTACGAGACCCATGCCCGGATCGC GAGTTCACGGTGGAGGTGTACGATACCCATGCCCGGATCGC < 41bp 0.778804327619359 0.386518439094273 0.5261747 0.10301334 prediction 0.557608655238719 Functional Loss - LENG8 ENSG00000167615 CDS Human protein_coding chr19:54969151 chr19:54969154 nonsynonymous SNV 0.988 3 24 hm5C_associated_SNPs_58147 0 0 1 0 2 LENG8 chr19:54969113 3'AG 54969113 Downstream 42bp
chr19 54969154 54969154 1 + G T LUAD 54969151 + 54969131 54969171 41 GAGTTCACGGTGGAGGTGTACGAGACCCATGCCCGGATCGC GAGTTCACGGTGGAGGTGTACGATACCCATGCCCGGATCGC < 41bp 0.778804327619359 0.386518439094273 0.5261747 0.10301334 prediction 0.557608655238719 Functional Loss - LENG8 ENSG00000167615 CDS Human protein_coding chr19:54969151 chr19:54969154 nonsynonymous SNV 0.988 3 24 hm5C_associated_SNPs_58147 0 0 1 0 2 LENG8 chr19:54969181 5'GT 54969181 Upstream 28bp
chr19 54969155 54969155 1 + A T SKCM 54969151 + 54969131 54969171 41 GAGTTCACGGTGGAGGTGTACGAGACCCATGCCCGGATCGC GAGTTCACGGTGGAGGTGTACGAGTCCCATGCCCGGATCGC < 41bp 0.778804327619359 0.476574281023166 0.5261747 0.28107506 prediction 0.557608655238719 Functional Loss - LENG8 ENSG00000167615 CDS Human protein_coding chr19:54969151 chr19:54969155 nonsynonymous SNV 0.990 2 25 hm5C_associated_SNPs_58148 0 0 1 0 2 LENG8 chr19:54969113 3'AG 54969113 Downstream 43bp
chr19 54969155 54969155 1 + A T SKCM 54969151 + 54969131 54969171 41 GAGTTCACGGTGGAGGTGTACGAGACCCATGCCCGGATCGC GAGTTCACGGTGGAGGTGTACGAGTCCCATGCCCGGATCGC < 41bp 0.778804327619359 0.476574281023166 0.5261747 0.28107506 prediction 0.557608655238719 Functional Loss - LENG8 ENSG00000167615 CDS Human protein_coding chr19:54969151 chr19:54969155 nonsynonymous SNV 0.990 2 25 hm5C_associated_SNPs_58148 0 0 1 0 2 LENG8 chr19:54969181 5'GT 54969181 Upstream 27bp
chr6 41309558 41309558 1 + A T OV 41309554 + 41309534 41309574 41 TCTGCCTCCACACAGACCTCCTGGACTCCCCGCGACCTGGT TCTGCCTCCACACAGACCTCCTGGTCTCCCCGCGACCTGGT < 41bp 0.778776529449837 0.467036875965116 0.25099233 0.07689428 prediction 0.557553058899674 Functional Loss - NCR2 ENSG00000096264 CDS Human protein_coding chr6:41309554 chr6:41309558 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_58153 0 0 0 0 1 NCR2 chr6:41309532 3'AG 41309532 Downstream 27bp
chr16 55519238 55519238 1 + G T LUAD 55519236 + 55519216 55519256 41 GGCGATGGATACCCCTTTGACGGTAAGGACGGACTCCTGGC GGCGATGGATACCCCTTTGACGTTAAGGACGGACTCCTGGC < 41bp 0.778776132946487 0.442309661128488 0.25977945 0.12388456 prediction 0.557552265892974 Functional Loss - MMP2 ENSG00000087245 CDS Human protein_coding chr16:55519236 chr16:55519238 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_58154 0 0 0 0 1 MMP2 chr16:55519211 3'AG 55519211 Downstream 28bp
chr16 55519237 55519237 1 + G C LUAD 55519236 + 55519216 55519256 41 GGCGATGGATACCCCTTTGACGGTAAGGACGGACTCCTGGC GGCGATGGATACCCCTTTGACCGTAAGGACGGACTCCTGGC < 41bp 0.778776132946487 0.469232506058067 0.25977945 0.18142876 prediction 0.557552265892974 Functional Loss - MMP2 ENSG00000087245 CDS Human protein_coding chr16:55519236 chr16:55519237 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_58155 0 0 0 0 1 MMP2 chr16:55519211 3'AG 55519211 Downstream 27bp
chr14 52417389 52417389 1 + G T LUSC 52417387 + 52417367 52417407 41 GTGTTTCTGAAAGATCTATCCAGCACTCCGATGGCCAGCAA GTGTTTCTGAAAGATCTATCCATCACTCCGATGGCCAGCAA < 41bp 0.778771071295793 0.455878130667412 0.20014325 0.030628026 prediction 0.557542142591585 Functional Loss - GNG2 ENSG00000186469 CDS Human protein_coding chr14:52417387 chr14:52417389 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_58156 0 0 0 0 1 GNG2 chr14:52417483 5'GT 52417483 Upstream 95bp
chr5 150051936 150051936 1 + G C LUSC 150051932 + 150051912 150051952 41 GCCGCTGAAGGGCGTCCCGCCAGAGAAGTTCAACCACACCG GCCGCTGAAGGGCGTCCCGCCAGACAAGTTCAACCACACCG < 41bp 0.801869647208375 0.523102212365658 0.52163553 0.31380552 prediction 0.557534869685434 Functional Loss - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150051932 chr5:150051936 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_58158 0 0 0 0 1 MYOZ3 chr5:150051902 3'AG 150051902 Downstream 35bp
chr6 80750401 80750401 1 + C T SKCM 80750399 + 80750379 80750419 41 GTTGGTCTGAATTCTCCTAACTCCATTTTGAAAGCTGCTAA GTTGGTCTGAATTCTCCTAACTTCATTTTGAAAGCTGCTAA < 41bp 0.784747725776344 0.505992321048143 0.90876245 0.16109562 prediction 0.557510809456403 Functional Loss - TTK ENSG00000112742 CDS Human protein_coding chr6:80750399 chr6:80750401 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_58159 0 0 1 0 2 TTK chr6:80750323 3'AG 80750323 Downstream 79bp
chr6 80750401 80750401 1 + C T SKCM 80750399 + 80750379 80750419 41 GTTGGTCTGAATTCTCCTAACTCCATTTTGAAAGCTGCTAA GTTGGTCTGAATTCTCCTAACTTCATTTTGAAAGCTGCTAA < 41bp 0.784747725776344 0.505992321048143 0.90876245 0.16109562 prediction 0.557510809456403 Functional Loss - TTK ENSG00000112742 CDS Human protein_coding chr6:80750399 chr6:80750401 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_58159 0 0 1 0 2 TTK chr6:80750420 5'GT 80750420 Upstream 20bp
chr3 150299521 150299521 1 + G T UCEC 150299518 + 150299498 150299538 41 CCTGAGATAGACAAAAAAATCAAGAACCTAAAGAAGGTGAG CCTGAGATAGACAAAAAAATCAATAACCTAAAGAAGGTGAG < 41bp 0.778754573959487 0.469200737992775 0.8358984 0.8681756 prediction 0.557509147918974 Functional Loss - EIF2A ENSG00000144895 CDS Human protein_coding chr3:150299518 chr3:150299521 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_58160 0 0 1 0 1 EIF2A chr3:150299533 5'GT 150299533 Upstream 13bp
chr17 73258729 73258729 1 + G T ACC 73258727 + 73258707 73258747 41 TCAGCTCATCAAAGCTGCTCCAGCAGGGAAAACAAGTTCTG TCAGCTCATCAAAGCTGCTCCATCAGGGAAAACAAGTTCTG < 41bp 0.778737799887745 0.474210194975874 0.43848693 0.3336093 prediction 0.557475599775489 Functional Loss - MRPS7 ENSG00000125445 CDS Human protein_coding chr17:73258727 chr17:73258729 nonsynonymous SNV 0.583 0 23 hm5C_associated_SNPs_58163 0 0 1 0 1 MRPS7 chr17:73258769 5'GT 73258769 Upstream 41bp
chr16 46960881 46960881 1 + G T LIHC 46960879 + 46960859 46960899 41 TGTTCTACTGCATGAAGCTCCTGGAGGAGACTGGCATCTGT TGTTCTACTGCATGAAGCTCCTTGAGGAGACTGGCATCTGT < 41bp 0.85623294143328 0.577506560024884 0.4225504 0.30126137 prediction 0.557452762816792 Functional Loss - GPT2 ENSG00000166123 CDS Human protein_coding chr16:46960879 chr16:46960881 synonymous SNV . 0 23 hm5C_associated_SNPs_58164 0 0 1 0 2 GPT2 chr16:46960837 3'AG 46960837 Downstream 45bp
chr16 46960881 46960881 1 + G T LIHC 46960879 + 46960859 46960899 41 TGTTCTACTGCATGAAGCTCCTGGAGGAGACTGGCATCTGT TGTTCTACTGCATGAAGCTCCTTGAGGAGACTGGCATCTGT < 41bp 0.85623294143328 0.577506560024884 0.4225504 0.30126137 prediction 0.557452762816792 Functional Loss - GPT2 ENSG00000166123 CDS Human protein_coding chr16:46960879 chr16:46960881 synonymous SNV . 0 23 hm5C_associated_SNPs_58164 0 0 1 0 2 GPT2 chr16:46960949 5'GT 46960949 Upstream 69bp
chrX 118109537 118109537 1 + A T LUSC 118109533 + 118109513 118109553 41 GCCAGGTGGAGGCGGCACTGCTCAAGTACAACGAGGCAGTT GCCAGGTGGAGGCGGCACTGCTCATGTACAACGAGGCAGTT < 41bp 0.778718599071758 0.458148568620583 0.43379354 0.4066217 prediction 0.557437198143516 Functional Loss - LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118109533 chrX:118109537 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_58167 0 0 0 0 1 LONRF3 chrX:118109560 5'GT 118109560 Upstream 24bp
chr12 57858499 57858499 1 + G T UCEC 57858496 + 57858476 57858516 41 CGGAGTGCAGTCAAGTTGACCAAGAAGCGGGCACTGTCCAT CGGAGTGCAGTCAAGTTGACCAATAAGCGGGCACTGTCCAT < 41bp 0.778717676710407 0.383391165009154 0.08253032 0.02605021 prediction 0.557435353420814 Functional Loss - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57858496 chr12:57858499 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_58168 0 0 0 0 2 GLI1 chr12:57858456 3'AG 57858456 Downstream 44bp
chr12 57858499 57858499 1 + G T UCEC 57858496 + 57858476 57858516 41 CGGAGTGCAGTCAAGTTGACCAAGAAGCGGGCACTGTCCAT CGGAGTGCAGTCAAGTTGACCAATAAGCGGGCACTGTCCAT < 41bp 0.778717676710407 0.383391165009154 0.08253032 0.02605021 prediction 0.557435353420814 Functional Loss - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57858496 chr12:57858499 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_58168 0 0 0 0 2 GLI1 chr12:57858486 3'AG 57858486 Downstream 14bp
chr19 7712265 7712265 1 + A T KIRP 7712261 + 7712241 7712281 41 GCCCGCTTCGGTCACTGGCACAAGAACAAGGCTGGCATAGA GCCCGCTTCGGTCACTGGCACAAGTACAAGGCTGGCATAGA < 41bp 0.805076472769546 0.526374420893 0.85501504 0.7955595 prediction 0.557404103753092 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7712261 chr19:7712265 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_58171 0 0 1 0 1 STXBP2 chr19:7712240 3'AG 7712240 Downstream 26bp
chr3 122000956 122000956 1 + C T UCEC 122000954 + 122000934 122000974 41 TCACCTTTGTGCTGTCTGTCCTCCAGGTGCCCTTCTCCAAC TCACCTTTGTGCTGTCTGTCCTTCAGGTGCCCTTCTCCAAC < 41bp 0.790598921655475 0.511899407361844 0.9501918 0.26662013 prediction 0.557399028587262 Functional Loss - CASR ENSG00000036828 CDS Human protein_coding chr3:122000954 chr3:122000956 synonymous SNV . 0 23 hm5C_associated_SNPs_58172 0 0 0 0 1 CASR chr3:122000930 3'AG 122000930 Downstream 27bp
chr10 126523124 126523124 1 + G T LUSC 126523122 + 126523102 126523142 41 GCCGTCTGAAAGCTTGGACCCAGCGTTCAGTCCTCGGATGC GCCGTCTGAAAGCTTGGACCCATCGTTCAGTCCTCGGATGC < 41bp 0.778690088200423 0.451796746792009 0.5319506 0.088834256 prediction 0.557380176400846 Functional Loss - ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126523122 chr10:126523124 nonsynonymous SNV 0.036 0 23 hm5C_associated_SNPs_58173 0 0 1 0 1 ABRAXAS2 chr10:126523071 3'AG 126523071 Downstream 54bp
chr2 234072416 234072416 1 + G T THCA 234072413 + 234072393 234072433 41 CTCCAAGGGGCAGGGAAAGACGCGGGACGACTCTGCGGACT CTCCAAGGGGCAGGGAAAGACGCTGGACGACTCTGCGGACT < 41bp 0.900130850698191 0.621453312426473 0.36798322 0.21634033 prediction 0.557355076543437 Functional Loss - INPP5D ENSG00000168918 CDS Human protein_coding chr2:234072413 chr2:234072416 nonsynonymous SNV 0.989 3 24 hm5C_associated_SNPs_58175 0 0 1 0 1 INPP5D chr2:234072353 3'AG 234072353 Downstream 64bp
chr22 38211201 38211201 1 + G T CESC 38211199 + 38211179 38211219 41 ATGGCGACATCGCACCCCTGCAGGAGATCTGCTGCCTCGCC ATGGCGACATCGCACCCCTGCATGAGATCTGCTGCCTCGCC < 41bp 0.874601916531028 0.595930543432095 0.92426395 0.40904957 prediction 0.557342746197866 Functional Loss - GCAT ENSG00000100116 CDS Human protein_coding chr22:38211199 chr22:38211201 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_58176 0 0 0 0 2 GCAT chr22:38211133 3'AG 38211133 Downstream 69bp
chr22 38211201 38211201 1 + G T CESC 38211199 + 38211179 38211219 41 ATGGCGACATCGCACCCCTGCAGGAGATCTGCTGCCTCGCC ATGGCGACATCGCACCCCTGCATGAGATCTGCTGCCTCGCC < 41bp 0.874601916531028 0.595930543432095 0.92426395 0.40904957 prediction 0.557342746197866 Functional Loss - GCAT ENSG00000100116 CDS Human protein_coding chr22:38211199 chr22:38211201 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_58176 0 0 0 0 2 GCAT chr22:38211287 5'GT 38211287 Upstream 87bp
chr7 127326695 127326695 1 + G C LUSC 127326694 + 127326674 127326714 41 CAGGGTGCGCCATCATTGTCCGAGGTCAGCCTCGTGGTGGG CAGGGTGCGCCATCATTGTCCCAGGTCAGCCTCGTGGTGGG < 41bp 0.789523596413954 0.510872642373133 0.89710027 0.5539382 prediction 0.557301908081641 Functional Loss - SND1 ENSG00000197157 CDS Human protein_coding chr7:127326694 chr7:127326695 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_58179 0 0 1 0 1 SND1 chr7:127326667 3'AG 127326667 Downstream 29bp
chr17 61619699 61619699 1 + G T UCEC 61619696 + 61619676 61619716 41 CTGACCTACTGCGACCTGCACAAGATCCAGCGGGCAGATCT CTGACCTACTGCGACCTGCACAATATCCAGCGGGCAGATCT < 41bp 0.778644380702346 0.382325560072157 0.77317184 0.24653953 prediction 0.557288761404692 Functional Loss - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61619696 chr17:61619699 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_58181 0 0 0 0 2 KCNH6 chr17:61619602 3'AG 61619602 Downstream 98bp
chr17 61619699 61619699 1 + G T UCEC 61619696 + 61619676 61619716 41 CTGACCTACTGCGACCTGCACAAGATCCAGCGGGCAGATCT CTGACCTACTGCGACCTGCACAATATCCAGCGGGCAGATCT < 41bp 0.778644380702346 0.382325560072157 0.77317184 0.24653953 prediction 0.557288761404692 Functional Loss - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61619696 chr17:61619699 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_58181 0 0 0 0 2 KCNH6 chr17:61619795 5'GT 61619795 Upstream 97bp
chr2 136530108 136530108 1 + G T COAD 136530105 + 136530085 136530125 41 AGTCAAGAGGGAATCTTATGCAAGAGAAAGAAGGTACTATA AGTCAAGAGGGAATCTTATGCAATAGAAAGAAGGTACTATA < 41bp 0.885662418264707 0.607032170402357 0.8577396 0.36789304 prediction 0.557260495724701 Functional Loss - UBXN4 ENSG00000144224 CDS Human protein_coding chr2:136530105 chr2:136530108 nonsynonymous SNV 0.797 2 24 hm5C_associated_SNPs_58183 0 0 1 0 1 UBXN4 chr2:136530117 5'GT 136530117 Upstream 10bp
chr1 226027006 226027006 1 + G T STAD 226027003 + 226026983 226027023 41 TTCTACATTCAAGGAGGGGACTGGGGGTCCCTGATCTGCAC TTCTACATTCAAGGAGGGGACTGTGGGTCCCTGATCTGCAC < 41bp 0.901897934128598 0.623269458925605 0.9042113 0.485755 prediction 0.557256950405987 Functional Loss - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226027003 chr1:226027006 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_58184 0 0 1 0 1 EPHX1 chr1:226027047 5'GT 226027047 Upstream 42bp
chr17 46024064 46024064 1 + G T LUSC 46024062 + 46024042 46024082 41 ATGACCGGATAGTCTTTCGGCGGGGCCTACCCACAGGAGAT ATGACCGGATAGTCTTTCGGCGTGGCCTACCCACAGGAGAT < 41bp 0.846617793998483 0.568001791168312 0.9067888 0.17010045 prediction 0.557232005660342 Functional Loss - PNPO ENSG00000108439 CDS Human protein_coding chr17:46024062 chr17:46024064 synonymous SNV . 0 23 hm5C_associated_SNPs_58185 0 0 1 0 1 PNPO chr17:46023980 3'AG 46023980 Downstream 85bp
chr16 1555456 1555456 1 + G T LUAD 1555453 + 1555433 1555473 41 AGCTGTCTAGGCCTGGGTGCCTCGGGAGGACTCCCCAACCT AGCTGTCTAGGCCTGGGTGCCTCTGGAGGACTCCCCAACCT < 41bp 0.900795608008321 0.622186503364687 0.46829396 0.32852322 prediction 0.557218209287268 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1555453 chr16:1555456 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_58187 0 0 1 0 1 TELO2 chr16:1555411 3'AG 1555411 Downstream 46bp
chr17 40811931 40811931 1 + G T LGG 40811928 + 40811908 40811948 41 ATCGTGGAGGAATTCGCCACCGAGGGCACTGACCGCAAGGA ATCGTGGAGGAATTCGCCACCGATGGCACTGACCGCAAGGA < 41bp 0.778601472067946 0.463343770163307 0.89697343 0.40122366 prediction 0.557202944135893 Functional Loss - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40811928 chr17:40811931 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_58189 0 0 0 0 2 TUBG2 chr17:40811852 3'AG 40811852 Downstream 80bp
chr17 40811931 40811931 1 + G T LGG 40811928 + 40811908 40811948 41 ATCGTGGAGGAATTCGCCACCGAGGGCACTGACCGCAAGGA ATCGTGGAGGAATTCGCCACCGATGGCACTGACCGCAAGGA < 41bp 0.778601472067946 0.463343770163307 0.89697343 0.40122366 prediction 0.557202944135893 Functional Loss - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40811928 chr17:40811931 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_58189 0 0 0 0 2 TUBG2 chr17:40811964 5'GT 40811964 Upstream 34bp
chr2 206605345 206605345 1 + G T LGG 206605343 + 206605323 206605363 41 CCGCCCTCAGACCTGGCACTCAGGTATCGCCCTCCGGCTGG CCGCCCTCAGACCTGGCACTCATGTATCGCCCTCCGGCTGG < 41bp 0.778566622098155 0.432938303430969 0.89238787 0.19516852 prediction 0.557133244196311 Functional Loss - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206605343 chr2:206605345 nonsynonymous SNV 0.049 5 23 hm5C_associated_SNPs_58191 0 0 0 0 1 NRP2 chr2:206605387 5'GT 206605387 Upstream 43bp
chr6 29911113 29911113 1 - C G rs41540315 29911114 - 29911094 29911134 41 TGCCGTCGTAGGCGTCCTGCCGGTACCCGCGGAGGAAGCGC TGCCGTCGTAGGCGTCCTGCCCGTACCCGCGGAGGAAGCGC < 41bp 0.778557259815632 0.486437444853642 0.1633727 0.022889227 prediction 0.557114519631263 Functional Loss - HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911114 chr6:29911113 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_58193 0 0 0 0 1 HLA-A chr6:29911028 5'GT 29911028 Upstream 86bp
chr3 119013847 119013847 1 + G T COAD 119013845 + 119013825 119013865 41 AGTATCTGGAAAGCTCGGGACAGGATGGTAATGTGCCTTGG AGTATCTGGAAAGCTCGGGACATGATGGTAATGTGCCTTGG < 41bp 0.778533905189597 0.447098793033111 0.5405995 0.29631048 prediction 0.557067810379195 Functional Loss - ARHGAP31 ENSG00000031081 CDS Human protein_coding chr3:119013845 chr3:119013847 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_58198 0 0 0 0 1 ARHGAP31 chr3:119013851 5'GT 119013851 Upstream 5bp
chrX 49021349 49021349 1 + G T LUAD 49021347 + 49021327 49021367 41 GGCCTCACCTTAGGTGGGGGCCGGGATGTAGCTGGGGACAC GGCCTCACCTTAGGTGGGGGCCTGGATGTAGCTGGGGACAC < 41bp 0.77852018514922 0.429303636179955 0.897719 0.8732722 prediction 0.55704037029844 Functional Loss - MAGIX ENSG00000017621 CDS Human other chrX:49021347 chrX:49021349 nonsynonymous SNV 0.072 2 23 hm5C_associated_SNPs_58202 0 0 1 0 1 MAGIX chrX:49021428 5'GT 49021428 Upstream 80bp
chr9 139243213 139243213 1 + G T LUSC 139243211 + 139243191 139243231 41 GGGACCTGCTGAGACTCCCCCTGGAGCGGGTGAGCCAGGGA GGGACCTGCTGAGACTCCCCCTTGAGCGGGTGAGCCAGGGA < 41bp 0.848641548042981 0.570123569698268 0.8434857 0.20226595 prediction 0.557035956689425 Functional Loss - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139243211 chr9:139243213 synonymous SNV . 0 23 hm5C_associated_SNPs_58203 0 0 1 0 2 GPSM1 chr9:139243149 3'AG 139243149 Downstream 65bp
chr9 139243213 139243213 1 + G T LUSC 139243211 + 139243191 139243231 41 GGGACCTGCTGAGACTCCCCCTGGAGCGGGTGAGCCAGGGA GGGACCTGCTGAGACTCCCCCTTGAGCGGGTGAGCCAGGGA < 41bp 0.848641548042981 0.570123569698268 0.8434857 0.20226595 prediction 0.557035956689425 Functional Loss - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139243211 chr9:139243213 synonymous SNV . 0 23 hm5C_associated_SNPs_58203 0 0 1 0 2 GPSM1 chr9:139243219 5'GT 139243219 Upstream 7bp
chr9 137779063 137779063 1 + G T UCEC 137779061 + 137779041 137779081 41 AGTCCTTCTCCACCAAAGACCAGGACAATGATCTTAACACC AGTCCTTCTCCACCAAAGACCATGACAATGATCTTAACACC < 41bp 0.778513664162667 0.444231204305597 0.2656129 0.04921621 prediction 0.557027328325334 Functional Loss - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137779061 chr9:137779063 nonsynonymous SNV 0.877 0 23 hm5C_associated_SNPs_58204 0 0 0 0 1 FCN2 chr9:137779014 3'AG 137779014 Downstream 50bp
chr9 137779064 137779064 1 + G T UCEC 137779061 + 137779041 137779081 41 AGTCCTTCTCCACCAAAGACCAGGACAATGATCTTAACACC AGTCCTTCTCCACCAAAGACCAGTACAATGATCTTAACACC < 41bp 0.778513664162667 0.3858927488811 0.2656129 0.07947755 prediction 0.557027328325334 Functional Loss - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137779061 chr9:137779064 nonsynonymous SNV 0.874 5 24 hm5C_associated_SNPs_58205 0 0 0 0 1 FCN2 chr9:137779014 3'AG 137779014 Downstream 51bp
chr17 48827999 48827999 1 + G T GBM 48827997 + 48827977 48828017 41 GACCAGTGAAGACATTAAATCTGAAGGTGACACTCAGTCCA GACCAGTGAAGACATTAAATCTTAAGGTGACACTCAGTCCA < 41bp 0.778503929146307 0.494673475935886 0.21517342 0.15327299 prediction 0.557007858292615 Functional Loss - LUC7L3 ENSG00000108848 CDS Human protein_coding chr17:48827997 chr17:48827999 stopgain 1.000 1 23 hm5C_associated_SNPs_58206 0 0 1 0 2 LUC7L3 chr17:48828002 5'GT 48828002 Upstream 4bp
chr17 48827999 48827999 1 + G T GBM 48827997 + 48827977 48828017 41 GACCAGTGAAGACATTAAATCTGAAGGTGACACTCAGTCCA GACCAGTGAAGACATTAAATCTTAAGGTGACACTCAGTCCA < 41bp 0.778503929146307 0.494673475935886 0.21517342 0.15327299 prediction 0.557007858292615 Functional Loss - LUC7L3 ENSG00000108848 CDS Human protein_coding chr17:48827997 chr17:48827999 stopgain 1.000 1 23 hm5C_associated_SNPs_58206 0 0 1 0 2 LUC7L3 chr17:48828055 5'GT 48828055 Upstream 57bp
chr13 37014302 37014302 1 + G T LUAD 37014299 + 37014279 37014319 41 AGGCGACAAGGAGTGTGCGTCAGGACTGAGAACCTGGCTAA AGGCGACAAGGAGTGTGCGTCAGTACTGAGAACCTGGCTAA < 41bp 0.897061033072604 0.618561040344528 0.8976216 0.37944955 prediction 0.556999985456154 Functional Loss - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37014299 chr13:37014302 nonsynonymous SNV 0.934 1 24 hm5C_associated_SNPs_58208 0 0 0 0 1 CCNA1 chr13:37014320 5'GT 37014320 Upstream 19bp
chr1 158325357 158325357 1 + A C rs201875044 158325353 + 158325333 158325373 41 CAGGGGAGTCAGAACTGAAACGGAAAGGTGAGCCCAACTCT CAGGGGAGTCAGAACTGAAACGGACAGGTGAGCCCAACTCT < 41bp 0.867696143880041 0.58920033823382 0.78036064 0.43702784 prediction 0.556991611292442 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325353 chr1:158325357 nonsynonymous SNV 0.838 0 25 hm5C_associated_SNPs_58212 0 0 0 0 1 CD1E chr1:158325359 5'GT 158325359 Upstream 3bp
chr12 7014895 7014895 1 + G T UCEC 7014893 + 7014873 7014913 41 ACAGAGGAGGGGGAGGACTACAGAAAAGAGGGGGAAGAGTT ACAGAGGAGGGGGAGGACTACATAAAAGAGGGGGAAGAGTT < 41bp 0.846664209108441 0.568188246991391 0.42448586 0.34566578 prediction 0.556951924234099 Functional Loss - LRRC23 ENSG00000010626 CDS Human protein_coding chr12:7014893 chr12:7014895 nonsynonymous SNV 0.936 1 23 hm5C_associated_SNPs_58214 0 0 0 0 1 LRRC23 chr12:7014923 5'GT 7014923 Upstream 29bp
chr10 118215342 118215342 1 + G T LUAD 118215340 + 118215320 118215360 41 ACCAGGCCTTGGAAGAATAACTGGTAAGCATGCCCTGCAGT ACCAGGCCTTGGAAGAATAACTTGTAAGCATGCCCTGCAGT < 41bp 0.778473586003407 0.450880553282562 0.21051773 0.061878324 prediction 0.556947172006813 Functional Loss - PNLIPRP3 ENSG00000203837 CDS Human protein_coding chr10:118215340 chr10:118215342 nonsynonymous SNV 0.809 4 23 hm5C_associated_SNPs_58215 0 0 0 0 1 PNLIPRP3 chr10:118215342 5'GT 118215342 Upstream 1bp
chr16 27363941 27363941 1 + G T LUSC 27363938 + 27363918 27363958 41 CTGAAGTCTGGGATTTCCTACAGGGCACGGGTGAGGGCCTG CTGAAGTCTGGGATTTCCTACAGTGCACGGGTGAGGGCCTG < 41bp 0.778470515937678 0.375833031196369 0.62172395 0.20947552 prediction 0.556941031875356 Functional Loss - IL4R ENSG00000077238 CDS Human protein_coding chr16:27363938 chr16:27363941 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_58217 0 0 1 0 3 IL4R chr16:27363861 3'AG 27363861 Downstream 81bp
chr16 27363941 27363941 1 + G T LUSC 27363938 + 27363918 27363958 41 CTGAAGTCTGGGATTTCCTACAGGGCACGGGTGAGGGCCTG CTGAAGTCTGGGATTTCCTACAGTGCACGGGTGAGGGCCTG < 41bp 0.778470515937678 0.375833031196369 0.62172395 0.20947552 prediction 0.556941031875356 Functional Loss - IL4R ENSG00000077238 CDS Human protein_coding chr16:27363938 chr16:27363941 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_58217 0 0 1 0 3 IL4R chr16:27363866 3'AG 27363866 Downstream 76bp
chr16 27363941 27363941 1 + G T LUSC 27363938 + 27363918 27363958 41 CTGAAGTCTGGGATTTCCTACAGGGCACGGGTGAGGGCCTG CTGAAGTCTGGGATTTCCTACAGTGCACGGGTGAGGGCCTG < 41bp 0.778470515937678 0.375833031196369 0.62172395 0.20947552 prediction 0.556941031875356 Functional Loss - IL4R ENSG00000077238 CDS Human protein_coding chr16:27363938 chr16:27363941 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_58217 0 0 1 0 3 IL4R chr16:27364017 5'GT 27364017 Upstream 77bp
chr13 39613332 39613332 1 + G T BLCA 39613330 + 39613310 39613350 41 CTGAGAAAATTCTTTACCGGCTGGATGTGGGTTGGCCTAAG CTGAGAAAATTCTTTACCGGCTTGATGTGGGTTGGCCTAAG < 41bp 0.843072307700857 0.564619403262821 0.37975124 0.27459168 prediction 0.556905808876072 Functional Loss - NHLRC3 ENSG00000188811 CDS Human protein_coding chr13:39613330 chr13:39613332 synonymous SNV . 0 23 hm5C_associated_SNPs_58218 0 0 1 0 2 NHLRC3 chr13:39613273 3'AG 39613273 Downstream 60bp
chr13 39613332 39613332 1 + G T BLCA 39613330 + 39613310 39613350 41 CTGAGAAAATTCTTTACCGGCTGGATGTGGGTTGGCCTAAG CTGAGAAAATTCTTTACCGGCTTGATGTGGGTTGGCCTAAG < 41bp 0.843072307700857 0.564619403262821 0.37975124 0.27459168 prediction 0.556905808876072 Functional Loss - NHLRC3 ENSG00000188811 CDS Human protein_coding chr13:39613330 chr13:39613332 synonymous SNV . 0 23 hm5C_associated_SNPs_58218 0 0 1 0 2 NHLRC3 chr13:39613425 5'GT 39613425 Upstream 94bp
chr2 206587416 206587416 1 + G T LUSC 206587413 + 206587393 206587433 41 AAGTACGATTGGCTGGACATCTGGGATGGCATTCCACATGG AAGTACGATTGGCTGGACATCTGTGATGGCATTCCACATGG < 41bp 0.895587795502215 0.617152246515315 0.7822516 0.21238756 prediction 0.5568710979738 Functional Loss - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206587413 chr2:206587416 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_58221 0 0 0 0 1 NRP2 chr2:206587432 5'GT 206587432 Upstream 17bp
chr12 27109494 27109494 1 + G T UCEC 27109491 + 27109471 27109511 41 ATTAGTATCAGGAAGAAATTCAAGAACTTAATGAAGTCGCG ATTAGTATCAGGAAGAAATTCAATAACTTAATGAAGTCGCG < 41bp 0.886335054929579 0.607909283106458 0.28245875 0.20137233 prediction 0.556851543646242 Functional Loss - FGFR1OP2 ENSG00000111790 CDS Human protein_coding chr12:27109491 chr12:27109494 stopgain 1.000 0 24 hm5C_associated_SNPs_58222 0 0 1 0 2 FGFR1OP2 chr12:27109476 3'AG 27109476 Downstream 19bp
chr12 27109494 27109494 1 + G T UCEC 27109491 + 27109471 27109511 41 ATTAGTATCAGGAAGAAATTCAAGAACTTAATGAAGTCGCG ATTAGTATCAGGAAGAAATTCAATAACTTAATGAAGTCGCG < 41bp 0.886335054929579 0.607909283106458 0.28245875 0.20137233 prediction 0.556851543646242 Functional Loss - FGFR1OP2 ENSG00000111790 CDS Human protein_coding chr12:27109491 chr12:27109494 stopgain 1.000 0 24 hm5C_associated_SNPs_58222 0 0 1 0 2 FGFR1OP2 chr12:27109593 5'GT 27109593 Upstream 100bp
chr1 46806555 46806555 1 + G T UCEC 46806552 + 46806532 46806572 41 CTGCTGAAGCGTGTGGACCTCGCGACGGTCCCGCGGAGACA CTGCTGAAGCGTGTGGACCTCGCTACGGTCCCGCGGAGACA < 41bp 0.885376081558132 0.606952861946703 0.77399975 0.39663193 prediction 0.556846439222857 Functional Loss - NSUN4 ENSG00000117481 CDS Human protein_coding chr1:46806552 chr1:46806555 synonymous SNV . 0 24 hm5C_associated_SNPs_58223 0 0 1 0 1 NSUN4 chr1:46806591 5'GT 46806591 Upstream 37bp
chr22 26091109 26091109 1 + A T COAD 26091105 + 26091085 26091125 41 GGTACATGGCTCCCGAGGTGCTGCAGAAGGGGACGGCCTAT GGTACATGGCTCCCGAGGTGCTGCTGAAGGGGACGGCCTAT < 41bp 0.778421238956256 0.455766472322701 0.34186223 0.2628653 prediction 0.556842477912512 Functional Loss - GRK3 ENSG00000100077 CDS Human protein_coding chr22:26091105 chr22:26091109 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_58224 0 0 1 0 1 GRK3 chr22:26091074 3'AG 26091074 Downstream 36bp
chr3 197880166 197880166 1 + A T SARC 197880162 + 197880142 197880182 41 AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACTGGATTTG AGCAGCAGCAGCAGCAGCAGCAGCTGCAGCAACTGGATTTG < 41bp 0.794110480246407 0.515697386625146 0.26316562 0.3460354 prediction 0.556826187242524 Functional Loss - FAM157A;FAM157B ENSG00000236438 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:197880162 chr3:197880166 . . 0 25 hm5C_associated_SNPs_58225 0 0 0 0 1 FAM157A;FAM157B chr3:197880077 3'AG 197880077 Downstream 90bp
chr16 3454479 3454479 1 + G T SARC 3454477 + 3454457 3454497 41 TCTTGGAGAAAACTGGATCTCAGCTTGGAGAACAGGAACTG TCTTGGAGAAAACTGGATCTCATCTTGGAGAACAGGAACTG < 41bp 0.778409396597157 0.453913823228836 0.31940097 0.2301206 prediction 0.556818793194315 Functional Loss - ZNF174 ENSG00000103343;ENSG00000262621 CDS Human protein_coding chr16:3454477 chr16:3454479 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_58226 0 0 0 0 1 ZNF174 chr16:3454426 3'AG 3454426 Downstream 54bp
chr10 98078211 98078211 1 + C T rs143503401 98078209 + 98078189 98078229 41 TCAGCTCACAACCAGAGCTCCTCGATGTCTCCTGGCTGATC TCAGCTCACAACCAGAGCTCCTTGATGTCTCCTGGCTGATC < 41bp 0.787663206830582 0.50925969120064 0.5447586 0.12188396 prediction 0.556807031259884 Functional Loss - DNTT ENSG00000107447 CDS Human protein_coding chr10:98078209 chr10:98078211 synonymous SNV . 0 23 hm5C_associated_SNPs_58227 0 0 0 0 1 DNTT chr10:98078283 5'GT 98078283 Upstream 73bp
chrX 47041247 47041247 1 + G T LUAD 47041244 + 47041224 47041264 41 CGGCTACCAGCCCCACTGCCCAGGAATCCTACAGCCAGTAC CGGCTACCAGCCCCACTGCCCAGTAATCCTACAGCCAGTAC < 41bp 0.90205757340995 0.623659874206867 0.23277268 0.4086214 prediction 0.556795398406165 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47041244 chrX:47041247 stopgain 0.997 0 24 hm5C_associated_SNPs_58228 0 0 1 0 2 RBM10 chrX:47041148 3'AG 47041148 Downstream 100bp
chrX 47041247 47041247 1 + G T LUAD 47041244 + 47041224 47041264 41 CGGCTACCAGCCCCACTGCCCAGGAATCCTACAGCCAGTAC CGGCTACCAGCCCCACTGCCCAGTAATCCTACAGCCAGTAC < 41bp 0.90205757340995 0.623659874206867 0.23277268 0.4086214 prediction 0.556795398406165 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47041244 chrX:47041247 stopgain 0.997 0 24 hm5C_associated_SNPs_58228 0 0 1 0 2 RBM10 chrX:47041265 5'GT 47041265 Upstream 19bp
chr1 185126245 185126245 1 + A C rs544628698 185126241 + 185126221 185126261 41 TGCGCAGTCTGGGGGCGGGGCCGGAGTTCAAGCCTCGGAGG TGCGCAGTCTGGGGGCGGGGCCGGCGTTCAAGCCTCGGAGG < 41bp 0.87841695415979 0.600019967011645 0.90837634 0.9027405 prediction 0.556793974296288 Functional Loss - SWT1 ENSG00000116668 UTR5 Human protein_coding chr1:185126241 chr1:185126245 . . 0 25 hm5C_associated_SNPs_58229 0 0 0 0 1 SWT1 chr1:185126296 5'GT 185126296 Upstream 52bp
chr16 1748833 1748833 1 + G T LUSC 1748830 + 1748810 1748850 41 AGCTGCAAGGAGCATCCCGGCTGGAGCAGAGCCAGGTGAGA AGCTGCAAGGAGCATCCCGGCTGTAGCAGAGCCAGGTGAGA < 41bp 0.897038983090803 0.618642544285142 0.5719251 0.22869784 prediction 0.556792877611323 Functional Loss - JPT2 ENSG00000206053 CDS Human protein_coding chr16:1748830 chr16:1748833 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_58230 0 0 1 0 1 JPT2 chr16:1748812 3'AG 1748812 Downstream 22bp
chr9 36671142 36671142 1 + A T COAD 36671138 + 36671118 36671158 41 GAGCAAAAGGAAGGGTTCTGCCAGAGACGGGCCCAGAAGAC GAGCAAAAGGAAGGGTTCTGCCAGTGACGGGCCCAGAAGAC < 41bp 0.778391991208638 0.482300676019529 0.8291464 0.62538236 prediction 0.556783982417275 Functional Loss - MELK ENSG00000165304 CDS Human protein_coding chr9:36671138 chr9:36671142 nonsynonymous SNV 0.205 1 25 hm5C_associated_SNPs_58231 0 0 1 0 1 MELK chr9:36671163 5'GT 36671163 Upstream 22bp
chr10 74990256 74990256 1 + G T UCEC 74990253 + 74990233 74990273 41 TCATGGAATGCCTCTACAGCCAAGAAATCTCTCCCTAATGG TCATGGAATGCCTCTACAGCCAATAAATCTCTCCCTAATGG < 41bp 0.778388304995418 0.408660362654147 0.28355828 0.04730794 prediction 0.556776609990836 Functional Loss - FAM149B1 ENSG00000138286 CDS Human protein_coding chr10:74990253 chr10:74990256 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_58233 0 0 1 0 2 FAM149B1 chr10:74990180 3'AG 74990180 Downstream 77bp
chr10 74990256 74990256 1 + G T UCEC 74990253 + 74990233 74990273 41 TCATGGAATGCCTCTACAGCCAAGAAATCTCTCCCTAATGG TCATGGAATGCCTCTACAGCCAATAAATCTCTCCCTAATGG < 41bp 0.778388304995418 0.408660362654147 0.28355828 0.04730794 prediction 0.556776609990836 Functional Loss - FAM149B1 ENSG00000138286 CDS Human protein_coding chr10:74990253 chr10:74990256 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_58233 0 0 1 0 2 FAM149B1 chr10:74990283 5'GT 74990283 Upstream 28bp
chr10 96484203 96484203 1 + G T UCEC 96484200 + 96484180 96484220 41 TACACAGATGCTGTGGTGCACGAGATCCAGAGATACATTGA TACACAGATGCTGTGGTGCACGATATCCAGAGATACATTGA < 41bp 0.785997263446017 0.507628603729945 0.88405347 0.106212825 prediction 0.556737319432143 Functional Loss - CYP2C18 ENSG00000108242 CDS Human protein_coding chr10:96484200 chr10:96484203 nonsynonymous SNV 0.135 4 24 hm5C_associated_SNPs_58235 0 0 0 0 1 CYP2C18 chr10:96484290 5'GT 96484290 Upstream 88bp
chr5 31317976 31317976 1 + G T SARC 31317973 + 31317953 31317993 41 GCGGAGGCGCTCATCCACCCCACGGGACTGAGCACGGGGGC GCGGAGGCGCTCATCCACCCCACTGGACTGAGCACGGGGGC < 41bp 0.778346693554436 0.401136883576331 0.099898666 0.1316871 prediction 0.556693387108872 Functional Loss - CDH6 ENSG00000113361 CDS Human protein_coding chr5:31317973 chr5:31317976 synonymous SNV . 0 24 hm5C_associated_SNPs_58237 0 0 0 0 1 CDH6 chr5:31318031 5'GT 31318031 Upstream 56bp
chr6 52053913 52053913 1 + G T LUAD 52053910 + 52053890 52053930 41 TGGGAGGCAAAGTGCCGCCACTTGGGCTGCATCAACGCTGA TGGGAGGCAAAGTGCCGCCACTTTGGCTGCATCAACGCTGA < 41bp 0.77834395051367 0.391994067024762 0.2594217 0.20004806 prediction 0.55668790102734 Functional Loss - IL17A ENSG00000112115 CDS Human protein_coding chr6:52053910 chr6:52053913 nonsynonymous SNV 0.086 0 24 hm5C_associated_SNPs_58239 0 0 0 0 1 IL17A chr6:52053853 3'AG 52053853 Downstream 61bp
chrX 155232571 155232571 1 + G T LUSC 155232568 + 155232548 155232588 41 GCCCTCAGCCCAGTCCCTTGCAGGCTGGACCTTGGAGAGTG GCCCTCAGCCCAGTCCCTTGCAGTCTGGACCTTGGAGAGTG < 41bp 0.778319998017879 0.3821966765198 0.89449704 0.08915296 prediction 0.556639996035758 Functional Loss - IL9R ENSG00000124334 CDS Human protein_coding chrX:155232568 chrX:155232571 nonsynonymous SNV 0.941 3 24 hm5C_associated_SNPs_58241 0 0 0 0 2 IL9R chrX:155232547 3'AG 155232547 Downstream 25bp
chrX 155232571 155232571 1 + G T LUSC 155232568 + 155232548 155232588 41 GCCCTCAGCCCAGTCCCTTGCAGGCTGGACCTTGGAGAGTG GCCCTCAGCCCAGTCCCTTGCAGTCTGGACCTTGGAGAGTG < 41bp 0.778319998017879 0.3821966765198 0.89449704 0.08915296 prediction 0.556639996035758 Functional Loss - IL9R ENSG00000124334 CDS Human protein_coding chrX:155232568 chrX:155232571 nonsynonymous SNV 0.941 3 24 hm5C_associated_SNPs_58241 0 0 0 0 2 IL9R chrX:155232571 3'AG 155232571 Downstream 1bp
chr1 97771826 97771826 1 + G C HNSC 97771825 + 97771805 97771845 41 GAACAGCTTGCCTAACCCAGCGGCAGATGTTCCGCACCAGC GAACAGCTTGCCTAACCCAGCCGCAGATGTTCCGCACCAGC < 41bp 0.778319233713161 0.487297943242951 0.87754834 0.39911833 prediction 0.556638467426321 Functional Loss - DPYD ENSG00000188641 CDS Human protein_coding chr1:97771825 chr1:97771826 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_58242 0 0 0 0 2 DPYD chr1:97771745 3'AG 97771745 Downstream 82bp
chr1 97771826 97771826 1 + G C HNSC 97771825 + 97771805 97771845 41 GAACAGCTTGCCTAACCCAGCGGCAGATGTTCCGCACCAGC GAACAGCTTGCCTAACCCAGCCGCAGATGTTCCGCACCAGC < 41bp 0.778319233713161 0.487297943242951 0.87754834 0.39911833 prediction 0.556638467426321 Functional Loss - DPYD ENSG00000188641 CDS Human antisense chr1:97771825 chr1:97771826 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_58242 0 0 0 0 2 DPYD-AS1 chr1:97771865 5'GT 97771865 Upstream 40bp
chr9 117405509 117405509 1 + G T LUAD 117405506 + 117405486 117405526 41 CAGGCAATGGGGACACGACACACGAACTCTCCGAGAATTCC CAGGCAATGGGGACACGACACACTAACTCTCCGAGAATTCC < 41bp 0.778318936117746 0.404056344485558 0.0684973 0.11081684 prediction 0.556637872235491 Functional Loss - TMEM268 ENSG00000157693 CDS Human protein_coding chr9:117405506 chr9:117405509 synonymous SNV . 0 24 hm5C_associated_SNPs_58243 0 0 1 0 1 TMEM268 chr9:117405414 3'AG 117405414 Downstream 96bp
chr7 134916773 134916773 1 + G T READ 134916770 + 134916750 134916790 41 ACAAGATCCTCTTTTTCAATCAAGAAATCAGGCTGTGGCAG ACAAGATCCTCTTTTTCAATCAATAAATCAGGCTGTGGCAG < 41bp 0.778315514343956 0.408525498272094 0.8103087 0.13387346 prediction 0.556631028687912 Functional Loss - STRA8 ENSG00000146857 CDS Human protein_coding chr7:134916770 chr7:134916773 stopgain 0.942 0 24 hm5C_associated_SNPs_58246 0 0 0 0 1 STRA8 chr7:134916790 5'GT 134916790 Upstream 18bp
chr2 71163154 71163154 1 + G T UCEC 71163151 + 71163131 71163171 41 GCTGCAACCTAGGTGCAGCCCGAGAACACATGCAGGCGGTC GCTGCAACCTAGGTGCAGCCCGATAACACATGCAGGCGGTC < 41bp 0.89778860807168 0.619487986129017 0.5429174 0.3761474 prediction 0.556601243885326 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71163151 chr2:71163154 stopgain 0.261 0 24 hm5C_associated_SNPs_58250 0 0 0 0 1 ATP6V1B1 chr2:71163202 5'GT 71163202 Upstream 49bp
chr17 8215878 8215878 1 + G T UCEC 8215875 + 8215855 8215895 41 GGATGCAGATGCCCCGGAGCCAGGTCTCCAAGCGAGAGCAG GGATGCAGATGCCCCGGAGCCAGTTCTCCAAGCGAGAGCAG < 41bp 0.778284948652534 0.381912468035979 0.8852463 0.09093839 prediction 0.556569897305067 Functional Loss - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8215875 chr17:8215878 nonsynonymous SNV 0.011 1 24 hm5C_associated_SNPs_58251 0 0 0 0 1 ARHGEF15 chr17:8215958 5'GT 8215958 Upstream 81bp
chr1 15783637 15783637 1 + G C HNSC 15783633 + 15783613 15783653 41 TATGTGACTAGGGTGGTTGGCGGTGAAGAAGCGAGGCCCAA TATGTGACTAGGGTGGTTGGCGGTCAAGAAGCGAGGCCCAA < 41bp 0.786845057628422 0.508566807350924 0.89391726 0.56297535 prediction 0.556556500554998 Functional Loss - CELA2A ENSG00000142615 CDS Human protein_coding chr1:15783633 chr1:15783637 nonsynonymous SNV 0.332 1 25 hm5C_associated_SNPs_58252 0 0 0 0 2 CELA2A chr1:15783581 3'AG 15783581 Downstream 57bp
chr1 15783637 15783637 1 + G C HNSC 15783633 + 15783613 15783653 41 TATGTGACTAGGGTGGTTGGCGGTGAAGAAGCGAGGCCCAA TATGTGACTAGGGTGGTTGGCGGTCAAGAAGCGAGGCCCAA < 41bp 0.786845057628422 0.508566807350924 0.89391726 0.56297535 prediction 0.556556500554998 Functional Loss - CELA2A ENSG00000142615 CDS Human protein_coding chr1:15783633 chr1:15783637 nonsynonymous SNV 0.332 1 25 hm5C_associated_SNPs_58252 0 0 0 0 2 CELA2A chr1:15783669 5'GT 15783669 Upstream 33bp
chr5 115423247 115423247 1 + G T GBM 115423244 + 115423224 115423264 41 AATAGATACAGGAAGATTTCCACGGTTGCTCACTCGGATTC AATAGATACAGGAAGATTTCCACTGTTGCTCACTCGGATTC < 41bp 0.882136429792477 0.603868185178077 0.8824458 0.24184018 prediction 0.556536489228801 Functional Loss - COMMD10 ENSG00000145781 CDS Human protein_coding chr5:115423244 chr5:115423247 nonsynonymous SNV 0.941 1 24 hm5C_associated_SNPs_58253 0 0 0 0 2 COMMD10 chr5:115423194 3'AG 115423194 Downstream 54bp
chr5 115423247 115423247 1 + G T GBM 115423244 + 115423224 115423264 41 AATAGATACAGGAAGATTTCCACGGTTGCTCACTCGGATTC AATAGATACAGGAAGATTTCCACTGTTGCTCACTCGGATTC < 41bp 0.882136429792477 0.603868185178077 0.8824458 0.24184018 prediction 0.556536489228801 Functional Loss - COMMD10 ENSG00000145781 CDS Human protein_coding chr5:115423244 chr5:115423247 nonsynonymous SNV 0.941 1 24 hm5C_associated_SNPs_58253 0 0 0 0 2 COMMD10 chr5:115423284 5'GT 115423284 Upstream 38bp
chr20 21367597 21367597 1 + G T BLCA 21367595 + 21367575 21367615 41 AAACCAGTACCAGATGCTAGCTGGGCCTGGTGGGTATCCAC AAACCAGTACCAGATGCTAGCTTGGCCTGGTGGGTATCCAC < 41bp 0.778254296129743 0.440398118769879 0.54527396 0.08464038 prediction 0.556508592259487 Functional Loss - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21367595 chr20:21367597 nonsynonymous SNV 0.049 4 23 hm5C_associated_SNPs_58254 0 0 1 0 2 XRN2 chr20:21367506 3'AG 21367506 Downstream 92bp
chr20 21367597 21367597 1 + G T BLCA 21367595 + 21367575 21367615 41 AAACCAGTACCAGATGCTAGCTGGGCCTGGTGGGTATCCAC AAACCAGTACCAGATGCTAGCTTGGCCTGGTGGGTATCCAC < 41bp 0.778254296129743 0.440398118769879 0.54527396 0.08464038 prediction 0.556508592259487 Functional Loss - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21367595 chr20:21367597 nonsynonymous SNV 0.049 4 23 hm5C_associated_SNPs_58254 0 0 1 0 2 XRN2 chr20:21367644 5'GT 21367644 Upstream 48bp
chr18 32407638 32407638 1 + G T LUAD 32407635 + 32407615 32407655 41 TCAGGAAGTCCTTTTATTACCAGGAGGTAAGTTCCAACCCT TCAGGAAGTCCTTTTATTACCAGTAGGTAAGTTCCAACCCT < 41bp 0.77825388964274 0.480047260460898 0.8972093 0.14792776 prediction 0.556507779285481 Functional Loss - DTNA ENSG00000134769 CDS Human protein_coding chr18:32407635 chr18:32407638 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_58255 0 0 1 0 2 DTNA chr18:32407557 3'AG 32407557 Downstream 82bp
chr18 32407638 32407638 1 + G T LUAD 32407635 + 32407615 32407655 41 TCAGGAAGTCCTTTTATTACCAGGAGGTAAGTTCCAACCCT TCAGGAAGTCCTTTTATTACCAGTAGGTAAGTTCCAACCCT < 41bp 0.77825388964274 0.480047260460898 0.8972093 0.14792776 prediction 0.556507779285481 Functional Loss - DTNA ENSG00000134769 CDS Human protein_coding chr18:32407635 chr18:32407638 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_58255 0 0 1 0 2 DTNA chr18:32407640 5'GT 32407640 Upstream 3bp
chr1 24112837 24112837 1 + C T LUSC 24112835 + 24112815 24112855 41 TTTTCAAATGTCTATCATCTCTCAATTCATATTTCAAAAAA TTTTCAAATGTCTATCATCTCTTAATTCATATTTCAAAAAA < 41bp 0.781721619092484 0.503484019911847 0.3496879 0.15876627 prediction 0.556475198361274 Functional Loss - PITHD1 ENSG00000057757 CDS Human protein_coding chr1:24112835 chr1:24112837 nonsynonymous SNV 0.940 4 23 hm5C_associated_SNPs_58259 0 0 1 0 2 PITHD1 chr1:24112805 3'AG 24112805 Downstream 33bp
chr1 24112837 24112837 1 + C T LUSC 24112835 + 24112815 24112855 41 TTTTCAAATGTCTATCATCTCTCAATTCATATTTCAAAAAA TTTTCAAATGTCTATCATCTCTTAATTCATATTTCAAAAAA < 41bp 0.781721619092484 0.503484019911847 0.3496879 0.15876627 prediction 0.556475198361274 Functional Loss - PITHD1 ENSG00000057757 CDS Human protein_coding chr1:24112835 chr1:24112837 nonsynonymous SNV 0.940 4 23 hm5C_associated_SNPs_58259 0 0 1 0 2 PITHD1 chr1:24112913 5'GT 24112913 Upstream 77bp
chr16 8870227 8870227 1 + G T THCA 8870225 + 8870205 8870245 41 ACCGGATCTTCAACACCTGGCTGGGGGACCCGTCCAAGAAC ACCGGATCTTCAACACCTGGCTTGGGGACCCGTCCAAGAAC < 41bp 0.77823732532705 0.432002886768934 0.224424 0.023704082 prediction 0.5564746506541 Functional Loss - ABAT ENSG00000183044 CDS Human protein_coding chr16:8870225 chr16:8870227 synonymous SNV . 0 23 hm5C_associated_SNPs_58260 0 0 1 0 1 ABAT chr16:8870201 3'AG 8870201 Downstream 27bp
chr14 24108149 24108149 1 + A T LUAD 24108145 + 24108125 24108165 41 AGGCTTTCTGTGAGGATGAGCAGCACCGGGATAGACAGGAA AGGCTTTCTGTGAGGATGAGCAGCTCCGGGATAGACAGGAA < 41bp 0.81468471821729 0.536449915087861 0.33685833 0.40138537 prediction 0.556469606258857 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24108145 chr14:24108149 nonsynonymous SNV 0.079 0 25 hm5C_associated_SNPs_58261 0 0 1 0 1 DHRS2 chr14:24108213 5'GT 24108213 Upstream 65bp
chr3 111732356 111732356 1 + G T COAD 111732354 + 111732334 111732374 41 GCAGCAACAAGGGAGCCTCCCAGGCGGGCATGACAGGGTAC GCAGCAACAAGGGAGCCTCCCATGCGGGCATGACAGGGTAC < 41bp 0.862468830923746 0.584248894801235 0.83207405 0.11922625 prediction 0.556439872245021 Functional Loss - TAGLN3 ENSG00000144834 CDS Human protein_coding chr3:111732354 chr3:111732356 nonsynonymous SNV 0.992 5 23 hm5C_associated_SNPs_58264 0 0 1 0 1 TAGLN3 chr3:111732257 3'AG 111732257 Downstream 100bp
chr7 45930178 45930178 1 + G T SKCM 45930175 + 45930155 45930195 41 AGCCCTGAAAGCCCAGAGAGCACGGAGATAACTGAGGAGGA AGCCCTGAAAGCCCAGAGAGCACTGAGATAACTGAGGAGGA < 41bp 0.778217887824616 0.38420847999717 0.44172913 0.46949083 prediction 0.556435775649231 Functional Loss - IGFBP1 ENSG00000146678 CDS Human protein_coding chr7:45930175 chr7:45930178 synonymous SNV . 0 24 hm5C_associated_SNPs_58265 0 0 1 0 1 IGFBP1 chr7:45930147 3'AG 45930147 Downstream 32bp
chr2 102632420 102632420 1 + A C UCEC 102632416 + 102632396 102632436 41 CCTGCCGTTCATCTCATACCCGCAAATTTTAACCTTGTCAA CCTGCCGTTCATCTCATACCCGCACATTTTAACCTTGTCAA < 41bp 0.77820829040814 0.356343131165497 0.15036258 0.10925549 prediction 0.55641658081628 Functional Loss - IL1R2 ENSG00000115590 CDS Human protein_coding chr2:102632416 chr2:102632420 nonsynonymous SNV 0.039 4 25 hm5C_associated_SNPs_58267 0 0 0 0 2 IL1R2 chr2:102632333 3'AG 102632333 Downstream 88bp
chr2 102632420 102632420 1 + A C UCEC 102632416 + 102632396 102632436 41 CCTGCCGTTCATCTCATACCCGCAAATTTTAACCTTGTCAA CCTGCCGTTCATCTCATACCCGCACATTTTAACCTTGTCAA < 41bp 0.77820829040814 0.356343131165497 0.15036258 0.10925549 prediction 0.55641658081628 Functional Loss - IL1R2 ENSG00000115590 CDS Human protein_coding chr2:102632416 chr2:102632420 nonsynonymous SNV 0.039 4 25 hm5C_associated_SNPs_58267 0 0 0 0 2 IL1R2 chr2:102632513 5'GT 102632513 Upstream 94bp
chr1 159802909 159802909 1 + C T BLCA 159802907 + 159802887 159802927 41 GTGGCCTATTCCTGCATTGTCTCCAACCCTGTCAGCTGGGA GTGGCCTATTCCTGCATTGTCTTCAACCCTGTCAGCTGGGA < 41bp 0.804487182786147 0.52628113494365 0.9481531 0.19729438 prediction 0.556412095684993 Functional Loss - SLAMF8 ENSG00000158714 CDS Human protein_coding chr1:159802907 chr1:159802909 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_58269 0 0 0 0 1 SLAMF8 chr1:159802971 5'GT 159802971 Upstream 63bp
chr1 220870050 220870050 1 + A T STAD 220870046 + 220870026 220870066 41 TCCGCCCCGTTTGCGGTAGCCACCAGCGTGGTATCCTTCGT TCCGCCCCGTTTGCGGTAGCCACCTGCGTGGTATCCTTCGT < 41bp 0.816858728915519 0.53865666927838 0.41403198 0.35513818 prediction 0.556404119274277 Functional Loss - C1orf115 ENSG00000162817 CDS Human protein_coding chr1:220870046 chr1:220870050 nonsynonymous SNV 0.549 2 25 hm5C_associated_SNPs_58271 0 0 1 0 1 C1orf115 chr1:220869954 3'AG 220869954 Downstream 97bp
chr3 113325912 113325912 1 + G T GBM 113325909 + 113325889 113325929 41 TGGTAAATGTCACTGGCAACCAGGACATCTGTTACTACAAC TGGTAAATGTCACTGGCAACCAGTACATCTGTTACTACAAC < 41bp 0.778193183209322 0.398496202118746 0.25822392 0.07756886 prediction 0.556386366418643 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113325909 chr3:113325912 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_58273 0 0 0 0 2 SIDT1 chr3:113325888 3'AG 113325888 Downstream 25bp
chr3 113325912 113325912 1 + G T GBM 113325909 + 113325889 113325929 41 TGGTAAATGTCACTGGCAACCAGGACATCTGTTACTACAAC TGGTAAATGTCACTGGCAACCAGTACATCTGTTACTACAAC < 41bp 0.778193183209322 0.398496202118746 0.25822392 0.07756886 prediction 0.556386366418643 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113325909 chr3:113325912 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_58273 0 0 0 0 2 SIDT1 chr3:113325961 5'GT 113325961 Upstream 50bp
chr16 1412897 1412897 1 + G T CESC 1412894 + 1412874 1412914 41 ACCCAGCACGGCATCCCCTACACGAGGCCCACAGGTGAGTC ACCCAGCACGGCATCCCCTACACTAGGCCCACAGGTGAGTC < 41bp 0.894284000011235 0.61609621020659 0.34980243 0.10549268 prediction 0.55637557960929 Functional Loss - GNPTG ENSG00000090581 CDS Human protein_coding chr16:1412894 chr16:1412897 synonymous SNV . 0 24 hm5C_associated_SNPs_58276 0 0 0 0 2 GNPTG chr16:1412826 3'AG 1412826 Downstream 72bp
chr16 1412897 1412897 1 + G T CESC 1412894 + 1412874 1412914 41 ACCCAGCACGGCATCCCCTACACGAGGCCCACAGGTGAGTC ACCCAGCACGGCATCCCCTACACTAGGCCCACAGGTGAGTC < 41bp 0.894284000011235 0.61609621020659 0.34980243 0.10549268 prediction 0.55637557960929 Functional Loss - GNPTG ENSG00000090581 CDS Human protein_coding chr16:1412894 chr16:1412897 synonymous SNV . 0 24 hm5C_associated_SNPs_58276 0 0 0 0 2 GNPTG chr16:1412907 5'GT 1412907 Upstream 11bp
chr9 125746965 125746965 1 + G T UCEC 125746963 + 125746943 125746983 41 ATTAGTAGGGCTCCAAAAACCAGAGATGAGCCTACCAGTGA ATTAGTAGGGCTCCAAAAACCATAGATGAGCCTACCAGTGA < 41bp 0.778184966907348 0.455922737155948 0.9060327 0.63363135 prediction 0.556369933814695 Functional Loss - RABGAP1 ENSG00000011454 CDS Human protein_coding chr9:125746963 chr9:125746965 stopgain 1.000 1 23 hm5C_associated_SNPs_58277 0 0 1 0 1 RABGAP1 chr9:125746998 5'GT 125746998 Upstream 34bp
chr20 36431321 36431321 1 + A T UCEC 36431317 + 36431297 36431337 41 CTGAAAGTGCTGGACCATGCCATGATTGGCCCCGAAGGCAC CTGAAAGTGCTGGACCATGCCATGTTTGGCCCCGAAGGCAC < 41bp 0.839723995148717 0.561549568889042 0.02331242 0.057679504 prediction 0.556348852519349 Functional Loss - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36431317 chr20:36431321 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_58279 0 0 0 0 1 CTNNBL1 chr20:36431269 3'AG 36431269 Downstream 53bp
chrX 48433596 48433596 1 + G C GBM 48433595 + 48433575 48433615 41 TCTGAAGAAGGAAAGCTCTTCGTGGGAGGGCTCAACTTTAA TCTGAAGAAGGAAAGCTCTTCCTGGGAGGGCTCAACTTTAA < 41bp 0.778173703399049 0.473129251766363 0.77949375 0.10917699 prediction 0.556347406798097 Functional Loss - RBM3 ENSG00000102317 CDS Human protein_coding chrX:48433595 chrX:48433596 nonsynonymous SNV 0.977 1 22 hm5C_associated_SNPs_58280 0 0 1 0 1 RBM3 chrX:48433556 3'AG 48433556 Downstream 41bp
chr10 94821918 94821918 1 + A C rs201284617 94821914 + 94821894 94821934 41 GCCTGGTGCGCAGCCAGTGGCCGCAGAGTGCGCACATCCTG GCCTGGTGCGCAGCCAGTGGCCGCCGAGTGCGCACATCCTG < 41bp 0.778164942949835 0.387499166976543 0.2458488 0.13615087 prediction 0.556329885899669 Functional Loss - CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94821914 chr10:94821918 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_58281 0 0 0 1 1 CYP26C1 chr10:94821991 5'GT 94821991 Upstream 74bp
chr3 185316311 185316311 1 + G T LUSC 185316308 + 185316288 185316328 41 AACTTCTGCTTGTAATGGAACACGGAATGTGGCCCCTTCAG AACTTCTGCTTGTAATGGAACACTGAATGTGGCCCCTTCAG < 41bp 0.778152541601684 0.387246189711917 0.14189169 0.0798212 prediction 0.556305083203369 Functional Loss - SENP2 ENSG00000163904 CDS Human protein_coding chr3:185316308 chr3:185316311 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_58283 0 0 1 0 1 SENP2 chr3:185316333 5'GT 185316333 Upstream 23bp
chr18 61621721 61621721 1 + G T COAD 61621719 + 61621699 61621739 41 TCACTTCTTGTTGCAATTAACAGAACTGACACTGAATATGT TCACTTCTTGTTGCAATTAACATAACTGACACTGAATATGT < 41bp 0.845688703895537 0.567539319991146 0.65287083 0.12520564 prediction 0.556298767808782 Functional Loss - HMSD ENSG00000221887 CDS Human protein_coding chr18:61621719 chr18:61621721 stopgain 0.006 3 23 hm5C_associated_SNPs_58285 0 0 0 0 2 HMSD chr18:61621642 3'AG 61621642 Downstream 80bp
chr18 61621721 61621721 1 + G T COAD 61621719 + 61621699 61621739 41 TCACTTCTTGTTGCAATTAACAGAACTGACACTGAATATGT TCACTTCTTGTTGCAATTAACATAACTGACACTGAATATGT < 41bp 0.845688703895537 0.567539319991146 0.65287083 0.12520564 prediction 0.556298767808782 Functional Loss - HMSD ENSG00000221887 CDS Human protein_coding chr18:61621719 chr18:61621721 stopgain 0.006 3 23 hm5C_associated_SNPs_58285 0 0 0 0 2 HMSD chr18:61621791 5'GT 61621791 Upstream 71bp
chr9 4844549 4844549 1 + G T rs77526515 4844547 + 4844527 4844567 41 CTCCGGGCTTTGGGTTGTCACTGGTTGCTGAGACCACCAGT CTCCGGGCTTTGGGTTGTCACTTGTTGCTGAGACCACCAGT < 41bp 0.778126366381259 0.448616231994451 0.73418397 0.49729136 prediction 0.556252732762517 Functional Loss - RCL1 ENSG00000120158 CDS Human protein_coding chr9:4844547 chr9:4844549 synonymous SNV . 0 23 hm5C_associated_SNPs_58288 0 0 1 0 1 RCL1 chr9:4844525 3'AG 4844525 Downstream 25bp
chr15 100214679 100214679 1 + G T UCEC 100214677 + 100214657 100214697 41 TGCTTTGTCCTACACTAACCCAGGGAGTTCACTGGTGTCCC TGCTTTGTCCTACACTAACCCATGGAGTTCACTGGTGTCCC < 41bp 0.856307821057445 0.578205811407375 0.9067824 0.6101737 prediction 0.556204019300141 Functional Loss - MEF2A ENSG00000068305 CDS Human protein_coding chr15:100214677 chr15:100214679 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_58292 0 0 1 0 1 MEF2A chr15:100214598 3'AG 100214598 Downstream 82bp
chr22 26886057 26886057 1 + C T UCEC 26886055 + 26886035 26886075 41 AGCCTACCATCTTTTACATGCTCCATTGTGGGACGGCCTTG AGCCTACCATCTTTTACATGCTTCATTGTGGGACGGCCTTG < 41bp 0.77810147083555 0.490539566406812 0.8926013 0.2089822 prediction 0.5562029416711 Functional Loss - SRRD ENSG00000100104 CDS Human protein_coding chr22:26886055 chr22:26886057 synonymous SNV . 0 23 hm5C_associated_SNPs_58293 0 0 1 0 1 SRRD chr22:26886010 3'AG 26886010 Downstream 48bp
chr1 173799882 173799882 1 + G T LUSC 173799880 + 173799860 173799900 41 TGGTACAGTCATTTCCCGTCCTGCAGGACAAGAGAATCCAG TGGTACAGTCATTTCCCGTCCTTCAGGACAAGAGAATCCAG < 41bp 0.778089237264786 0.456313657659053 0.29532844 0.22249341 prediction 0.556178474529573 Functional Loss - DARS2 ENSG00000117593 CDS Human protein_coding chr1:173799880 chr1:173799882 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_58294 0 0 1 0 2 DARS2 chr1:173799798 3'AG 173799798 Downstream 85bp
chr1 173799882 173799882 1 + G T LUSC 173799880 + 173799860 173799900 41 TGGTACAGTCATTTCCCGTCCTGCAGGACAAGAGAATCCAG TGGTACAGTCATTTCCCGTCCTTCAGGACAAGAGAATCCAG < 41bp 0.778089237264786 0.456313657659053 0.29532844 0.22249341 prediction 0.556178474529573 Functional Loss - DARS2 ENSG00000117593 CDS Human protein_coding chr1:173799880 chr1:173799882 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_58294 0 0 1 0 2 DARS2 chr1:173799899 5'GT 173799899 Upstream 18bp
chr3 1425008 1425008 1 + C T SKCM 1425006 + 1424986 1425026 41 TGGCCCCAAGGGGAACTTCTCTCCAGAGTTTTTCTGCTTCT TGGCCCCAAGGGGAACTTCTCTTCAGAGTTTTTCTGCTTCT < 41bp 0.778084134051934 0.487812647321188 0.9297215 0.07741007 prediction 0.556168268103868 Functional Loss - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1425006 chr3:1425008 synonymous SNV . 0 23 hm5C_associated_SNPs_58295 0 0 0 0 2 CNTN6 chr3:1424977 3'AG 1424977 Downstream 32bp
chr3 1425008 1425008 1 + C T SKCM 1425006 + 1424986 1425026 41 TGGCCCCAAGGGGAACTTCTCTCCAGAGTTTTTCTGCTTCT TGGCCCCAAGGGGAACTTCTCTTCAGAGTTTTTCTGCTTCT < 41bp 0.778084134051934 0.487812647321188 0.9297215 0.07741007 prediction 0.556168268103868 Functional Loss - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1425006 chr3:1425008 synonymous SNV . 0 23 hm5C_associated_SNPs_58295 0 0 0 0 2 CNTN6 chr3:1425092 5'GT 1425092 Upstream 85bp
chr19 14557291 14557291 1 + G T GBM 14557288 + 14557268 14557308 41 ATGTTGCAGGACAGTAAGACCAAGATTGACATCATCCGCAT ATGTTGCAGGACAGTAAGACCAATATTGACATCATCCGCAT < 41bp 0.887948574846645 0.60986457416293 0.41580576 0.15948635 prediction 0.55616800136743 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14557288 chr19:14557291 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_58296 0 0 1 0 2 PKN1 chr19:14557238 3'AG 14557238 Downstream 54bp
chr19 14557291 14557291 1 + G T GBM 14557288 + 14557268 14557308 41 ATGTTGCAGGACAGTAAGACCAAGATTGACATCATCCGCAT ATGTTGCAGGACAGTAAGACCAATATTGACATCATCCGCAT < 41bp 0.887948574846645 0.60986457416293 0.41580576 0.15948635 prediction 0.55616800136743 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14557288 chr19:14557291 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_58296 0 0 1 0 2 PKN1 chr19:14557373 5'GT 14557373 Upstream 83bp
chr20 2375901 2375901 1 + G T LUAD 2375899 + 2375879 2375919 41 TCCAGACATCGGAGCTGGAGCGGGGTGAGGGCTGGACAGCA TCCAGACATCGGAGCTGGAGCGTGGTGAGGGCTGGACAGCA < 41bp 0.867198031087135 0.589119334520172 0.9313251 0.8951533 prediction 0.556157393133925 Functional Loss - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2375899 chr20:2375901 synonymous SNV . 0 23 hm5C_associated_SNPs_58297 0 0 0 0 1 TGM6 chr20:2375840 3'AG 2375840 Downstream 62bp
chr17 41061435 41061435 1 + G T UCEC 41061433 + 41061413 41061453 41 AGTTGTTGCTGGAGTCCTGTCAGGTATGGGCTGATCTGACT AGTTGTTGCTGGAGTCCTGTCATGTATGGGCTGATCTGACT < 41bp 0.778065864166411 0.436203278043884 0.48921773 0.17213875 prediction 0.556131728332821 Functional Loss - G6PC ENSG00000131482 CDS Human protein_coding chr17:41061433 chr17:41061435 nonsynonymous SNV 0.864 5 23 hm5C_associated_SNPs_58299 0 0 0 0 1 G6PC chr17:41061435 5'GT 41061435 Upstream 1bp
chr7 157174993 157174993 1 + A T UCEC 157174989 + 157174969 157175009 41 CGAAGGGGTCCCCGAGGAAGCAGAAGCCGAGGGACGGGGTC CGAAGGGGTCCCCGAGGAAGCAGATGCCGAGGGACGGGGTC < 41bp 0.781587472494121 0.503537294761463 0.8507252 0.8928579 prediction 0.556100355465315 Functional Loss - DNAJB6 ENSG00000105993 CDS Human protein_coding chr7:157174989 chr7:157174993 nonsynonymous SNV 0.358 2 25 hm5C_associated_SNPs_58303 0 0 1 0 2 DNAJB6 chr7:157174940 3'AG 157174940 Downstream 54bp
chr7 157174993 157174993 1 + A T UCEC 157174989 + 157174969 157175009 41 CGAAGGGGTCCCCGAGGAAGCAGAAGCCGAGGGACGGGGTC CGAAGGGGTCCCCGAGGAAGCAGATGCCGAGGGACGGGGTC < 41bp 0.781587472494121 0.503537294761463 0.8507252 0.8928579 prediction 0.556100355465315 Functional Loss - DNAJB6 ENSG00000105993 CDS Human protein_coding chr7:157174989 chr7:157174993 nonsynonymous SNV 0.358 2 25 hm5C_associated_SNPs_58303 0 0 1 0 2 DNAJB6 chr7:157175071 5'GT 157175071 Upstream 79bp
chrX 134993362 134993362 1 + A T OV 134993358 + 134993338 134993378 41 ATTTTGTTTCCAGATGTCACCGCCACTCACAGTGTCCATGA ATTTTGTTTCCAGATGTCACCGCCTCTCACAGTGTCCATGA < 41bp 0.842107999205927 0.564064714397645 0.21700066 0.048741877 prediction 0.556086569616563 Functional Loss - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134993358 chrX:134993362 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_58305 0 0 0 0 1 SAGE1 chrX:134993351 3'AG 134993351 Downstream 12bp
chr20 9496977 9496977 1 + G C LUAD 9496976 + 9496956 9496996 41 GCAGTTTGTCTACGACTCCTCGGAGAAAACCCACTTCAAAG GCAGTTTGTCTACGACTCCTCCGAGAAAACCCACTTCAAAG < 41bp 0.778031573543055 0.469316953764383 0.5667236 0.14470175 prediction 0.55606314708611 Functional Loss - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9496976 chr20:9496977 synonymous SNV . 0 22 hm5C_associated_SNPs_58307 0 0 0 0 2 LAMP5 chr20:9496903 3'AG 9496903 Downstream 75bp
chr20 9496977 9496977 1 + G C LUAD 9496976 + 9496956 9496996 41 GCAGTTTGTCTACGACTCCTCGGAGAAAACCCACTTCAAAG GCAGTTTGTCTACGACTCCTCCGAGAAAACCCACTTCAAAG < 41bp 0.778031573543055 0.469316953764383 0.5667236 0.14470175 prediction 0.55606314708611 Functional Loss - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9496976 chr20:9496977 synonymous SNV . 0 22 hm5C_associated_SNPs_58307 0 0 0 0 2 LAMP5 chr20:9497008 5'GT 9497008 Upstream 32bp
chr19 9267424 9267424 1 + G T COAD 9267422 + 9267402 9267442 41 ACACACCCAGTGTTGGTTCCCAGGTGCACTAAGATCTCTGG ACACACCCAGTGTTGGTTCCCATGTGCACTAAGATCTCTGG < 41bp 0.778029100756642 0.423624791799991 0.91516566 0.8125614 prediction 0.556058201513285 Functional Loss - ZNF317 ENSG00000130803 CDS Human protein_coding chr19:9267422 chr19:9267424 nonsynonymous SNV 0.197 1 23 hm5C_associated_SNPs_58308 0 0 1 0 1 ZNF317 chr19:9267424 5'GT 9267424 Upstream 1bp
chr17 41152060 41152060 1 + G T UCEC 41152057 + 41152037 41152077 41 ATGGGCAAGAAGAAGATCGCCAAGAGATCAAAGATAAAATC ATGGGCAAGAAGAAGATCGCCAATAGATCAAAGATAAAATC < 41bp 0.890273521951087 0.612246953948538 0.80612946 0.11499184 prediction 0.556053136005098 Functional Loss - RPL27 ENSG00000131469 CDS Human protein_coding chr17:41152057 chr17:41152060 nonsynonymous SNV 0.987 2 24 hm5C_associated_SNPs_58309 0 0 1 0 1 RPL27 chr17:41152119 5'GT 41152119 Upstream 60bp
chrX 70443570 70443570 1 + G T UCEC 70443568 + 70443548 70443588 41 ATGAGGCAGGATGAACTGGACAGGTTTGTACACCTTGCTCA ATGAGGCAGGATGAACTGGACATGTTTGTACACCTTGCTCA < 41bp 0.77802622996482 0.438842518620458 0.5965776 0.32005632 prediction 0.556052459929639 Functional Loss - GJB1 ENSG00000169562 CDS Human protein_coding chrX:70443568 chrX:70443570 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_58310 0 0 1 0 1 BCYRN1 chrX:70443542 3'AG 70443542 Downstream 29bp
chr13 49039374 49039374 1 + C T CESC 49039372 + 49039352 49039392 41 GTCACCAATACCTCACATTCCTCGAAGCCCTTACAAGTTTC GTCACCAATACCTCACATTCCTTGAAGCCCTTACAAGTTTC < 41bp 0.797093517959416 0.519075383775323 0.5593939 0.087031275 prediction 0.556036268368185 Functional Loss - RB1 ENSG00000139687 CDS Human protein_coding chr13:49039372 chr13:49039374 stopgain 1.000 1 23 hm5C_associated_SNPs_58311 3 0 1 0 1 RB1 chr13:49039341 3'AG 49039341 Downstream 34bp
chr2 233321120 233321120 1 + G T UCEC 233321117 + 233321097 233321137 41 GCTGAGGCCCTGGATGCTGCCAAGAAGCTGCAGCCCATCCA GCTGAGGCCCTGGATGCTGCCAATAAGCTGCAGCCCATCCA < 41bp 0.853524613281518 0.575521338451338 0.4081101 0.20447594 prediction 0.556006549660361 Functional Loss - ALPI ENSG00000163295 CDS Human protein_coding chr2:233321117 chr2:233321120 nonsynonymous SNV 0.947 2 24 hm5C_associated_SNPs_58312 0 0 0 0 2 ALPI chr2:233321059 3'AG 233321059 Downstream 62bp
chr2 233321120 233321120 1 + G T UCEC 233321117 + 233321097 233321137 41 GCTGAGGCCCTGGATGCTGCCAAGAAGCTGCAGCCCATCCA GCTGAGGCCCTGGATGCTGCCAATAAGCTGCAGCCCATCCA < 41bp 0.853524613281518 0.575521338451338 0.4081101 0.20447594 prediction 0.556006549660361 Functional Loss - ALPI ENSG00000163295 CDS Human protein_coding chr2:233321117 chr2:233321120 nonsynonymous SNV 0.947 2 24 hm5C_associated_SNPs_58312 0 0 0 0 2 ALPI chr2:233321175 5'GT 233321175 Upstream 56bp
chr12 130827209 130827209 1 + A T GBM 130827205 + 130827185 130827225 41 GAGACAGCGCAGCTGGTGGGCTCCACTGCCGTGAGTGCTTC GAGACAGCGCAGCTGGTGGGCTCCTCTGCCGTGAGTGCTTC < 41bp 0.777998637101493 0.454593382527303 0.47150525 0.061318576 prediction 0.555997274202986 Functional Loss - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130827205 chr12:130827209 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_58313 0 0 0 0 2 PIWIL1 chr12:130827125 3'AG 130827125 Downstream 85bp
chr12 130827209 130827209 1 + A T GBM 130827205 + 130827185 130827225 41 GAGACAGCGCAGCTGGTGGGCTCCACTGCCGTGAGTGCTTC GAGACAGCGCAGCTGGTGGGCTCCTCTGCCGTGAGTGCTTC < 41bp 0.777998637101493 0.454593382527303 0.47150525 0.061318576 prediction 0.555997274202986 Functional Loss - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130827205 chr12:130827209 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_58313 0 0 0 0 2 PIWIL1 chr12:130827214 5'GT 130827214 Upstream 6bp
chr11 72554312 72554312 1 - G A UCEC 72554314 - 72554294 72554334 41 AAGTACCTACAGTTTCCCACCTCGAACAGCCTCCTGAGCAT AAGTACCTACAGTTTCCCACCTTGAACAGCCTCCTGAGCAT < 41bp 0.806507628518155 0.528516342900666 0.34921104 0.02592948 prediction 0.555982571234979 Functional Loss - FCHSD2 ENSG00000137478 CDS Human protein_coding chr11:72554314 chr11:72554312 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_58315 0 0 1 0 1 FCHSD2 chr11:72554373 3'AG 72554373 Downstream 62bp
chr5 115327891 115327891 1 + G T UCEC 115327889 + 115327869 115327909 41 ACTAATGATATTTGATGAATCAGGATTGTTGTTGGAACCAA ACTAATGATATTTGATGAATCATGATTGTTGTTGGAACCAA < 41bp 0.836781973138157 0.558791867829454 0.37925363 0.07406056 prediction 0.555980210617407 Functional Loss - LVRN ENSG00000172901 CDS Human protein_coding chr5:115327889 chr5:115327891 stopgain 0.066 0 23 hm5C_associated_SNPs_58316 0 0 1 0 1 LVRN chr5:115327820 3'AG 115327820 Downstream 72bp
chr2 231090571 231090571 1 + G T LUAD 231090569 + 231090549 231090589 41 AGGCCAAGCTCATGGCCCAGCAGGGCCAGCAGGGGCAGATG AGGCCAAGCTCATGGCCCAGCATGGCCAGCAGGGGCAGATG < 41bp 0.871129390634963 0.593148308843952 0.60048383 0.0719299 prediction 0.555962163582022 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231090569 chr2:231090571 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_58317 0 0 0 0 1 SP140 chr2:231090618 5'GT 231090618 Upstream 48bp
chr20 44050083 44050083 1 + A C LUSC 44050079 + 44050059 44050099 41 ACGTGAGTGGCTATGGGCTGCAGAAGGGGGAGCTGAGCACA ACGTGAGTGGCTATGGGCTGCAGACGGGGGAGCTGAGCACA < 41bp 0.777981014002846 0.443358778620027 0.7555717 0.45997095 prediction 0.555962028005692 Functional Loss - PIGT ENSG00000124155 CDS Human protein_coding chr20:44050079 chr20:44050083 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_58319 0 0 1 0 1 PIGT chr20:44050023 3'AG 44050023 Downstream 61bp
chr17 21203896 21203896 1 + G T COAD 21203894 + 21203874 21203914 41 TGATGACTTGGTGACCATCTCAGAACTGGGCCGTGGAGCCT TGATGACTTGGTGACCATCTCATAACTGGGCCGTGGAGCCT < 41bp 0.777967115950208 0.442688240817175 0.87841785 0.1571697 prediction 0.555934231900415 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21203894 chr17:21203896 stopgain 0.906 1 23 hm5C_associated_SNPs_58320 0 0 1 0 2 MAP2K3 chr17:21203857 3'AG 21203857 Downstream 40bp
chr17 21203896 21203896 1 + G T COAD 21203894 + 21203874 21203914 41 TGATGACTTGGTGACCATCTCAGAACTGGGCCGTGGAGCCT TGATGACTTGGTGACCATCTCATAACTGGGCCGTGGAGCCT < 41bp 0.777967115950208 0.442688240817175 0.87841785 0.1571697 prediction 0.555934231900415 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21203894 chr17:21203896 stopgain 0.906 1 23 hm5C_associated_SNPs_58320 0 0 1 0 2 MAP2K3 chr17:21203970 5'GT 21203970 Upstream 75bp
chr19 10822901 10822901 1 + G C STAD 10822900 + 10822880 10822920 41 GAGCGGGGGTGAGAGCAAGTCGCAGTTCTGGCGGATGGTGG GAGCGGGGGTGAGAGCAAGTCCCAGTTCTGGCGGATGGTGG < 41bp 0.813916104184673 0.535949119934681 0.7457664 0.5930537 prediction 0.555933968499985 Functional Loss - QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10822900 chr19:10822901 synonymous SNV . 0 22 hm5C_associated_SNPs_58321 0 0 1 0 2 QTRT1 chr19:10822837 3'AG 10822837 Downstream 65bp
chr19 10822901 10822901 1 + G C STAD 10822900 + 10822880 10822920 41 GAGCGGGGGTGAGAGCAAGTCGCAGTTCTGGCGGATGGTGG GAGCGGGGGTGAGAGCAAGTCCCAGTTCTGGCGGATGGTGG < 41bp 0.813916104184673 0.535949119934681 0.7457664 0.5930537 prediction 0.555933968499985 Functional Loss - QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10822900 chr19:10822901 synonymous SNV . 0 22 hm5C_associated_SNPs_58321 0 0 1 0 2 QTRT1 chr19:10822975 5'GT 10822975 Upstream 75bp
chr16 67262467 67262467 1 + G T SARC 67262465 + 67262445 67262485 41 TATGAGCTCGATGGCACGAGCAGCGTTCTCTGAGGATGGGG TATGAGCTCGATGGCACGAGCATCGTTCTCTGAGGATGGGG < 41bp 0.777936373580594 0.443995734344096 0.34498653 0.14780599 prediction 0.555872747161188 Functional Loss - TMEM208 ENSG00000168701 CDS Human protein_coding chr16:67262465 chr16:67262467 nonsynonymous SNV 0.971 0 23 hm5C_associated_SNPs_58325 0 0 1 0 2 TMEM208 chr16:67262398 3'AG 67262398 Downstream 70bp
chr16 67262467 67262467 1 + G T SARC 67262465 + 67262445 67262485 41 TATGAGCTCGATGGCACGAGCAGCGTTCTCTGAGGATGGGG TATGAGCTCGATGGCACGAGCATCGTTCTCTGAGGATGGGG < 41bp 0.777936373580594 0.443995734344096 0.34498653 0.14780599 prediction 0.555872747161188 Functional Loss - TMEM208 ENSG00000168701 CDS Human protein_coding chr16:67262465 chr16:67262467 nonsynonymous SNV 0.971 0 23 hm5C_associated_SNPs_58325 0 0 1 0 2 TMEM208 chr16:67262560 5'GT 67262560 Upstream 94bp
chr12 124103252 124103252 1 + G T SARC 124103250 + 124103230 124103270 41 GATGAAGCCCCAGAGAAACACAGCGGACCTTCTGCCAAAAC GATGAAGCCCCAGAGAAACACATCGGACCTTCTGCCAAAAC < 41bp 0.777924594633602 0.435187982587145 0.8983449 0.79551923 prediction 0.555849189267203 Functional Loss - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124103250 chr12:124103252 nonsynonymous SNV 0.063 0 23 hm5C_associated_SNPs_58328 0 0 1 0 1 DDX55 chr12:124103216 3'AG 124103216 Downstream 37bp
chr11 47178701 47178701 1 + G C LUSC 47178700 + 47178680 47178720 41 TGCCTTGGGCGGGGCCGGCACGCTGGAGGGCGTGGAGGCGT TGCCTTGGGCGGGGCCGGCACCCTGGAGGGCGTGGAGGCGT < 41bp 0.812326190430602 0.534431612569648 0.5110545 0.3692238 prediction 0.555789155721907 Functional Loss - C11orf49 ENSG00000149179 CDS Human protein_coding chr11:47178700 chr11:47178701 synonymous SNV . 0 22 hm5C_associated_SNPs_58331 0 0 1 0 1 C11orf49 chr11:47178769 5'GT 47178769 Upstream 69bp
chr12 113448195 113448195 1 + G T LUAD 113448192 + 113448172 113448212 41 TTTTTAGACAATGCAGACACCAGGAAGTTGTGGAGCTAGGA TTTTTAGACAATGCAGACACCAGTAAGTTGTGGAGCTAGGA < 41bp 0.849105397255633 0.571212465368082 0.40840447 0.12672547 prediction 0.555785863775101 Functional Loss - OAS2 ENSG00000111335 CDS Human protein_coding chr12:113448192 chr12:113448195 nonsynonymous SNV 0.003 2 24 hm5C_associated_SNPs_58332 0 0 0 0 1 OAS2 chr12:113448179 3'AG 113448179 Downstream 17bp
chr20 57875877 57875877 1 + G T CESC 57875874 + 57875854 57875894 41 CCTGATCTAGGTTCATGGAGCCGGGGCTGTGGCTCCTTTTC CCTGATCTAGGTTCATGGAGCCGTGGCTGTGGCTCCTTTTC < 41bp 0.777878107041575 0.388033960318063 0.9132811 0.42950088 prediction 0.555756214083149 Functional Loss - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57875874 chr20:57875877 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_58334 0 0 0 0 1 EDN3 chr20:57875919 5'GT 57875919 Upstream 43bp
chr14 74531566 74531566 1 - G A UCEC 74531568 - 74531548 74531588 41 AATGTTCTCATTCACCGGCTCTCGATCCTCCTTCAGGGGAG AATGTTCTCATTCACCGGCTCTTGATCCTCCTTCAGGGGAG < 41bp 0.803822468684002 0.525952952609179 0.7001427 0.11330423 prediction 0.555739032149647 Functional Loss - ALDH6A1 ENSG00000119711 CDS Human protein_coding chr14:74531568 chr14:74531566 stopgain 1.000 1 23 hm5C_associated_SNPs_58335 0 0 1 0 2 ALDH6A1 chr14:74531525 5'GT 74531525 Upstream 42bp
chr14 74531566 74531566 1 - G A UCEC 74531568 - 74531548 74531588 41 AATGTTCTCATTCACCGGCTCTCGATCCTCCTTCAGGGGAG AATGTTCTCATTCACCGGCTCTTGATCCTCCTTCAGGGGAG < 41bp 0.803822468684002 0.525952952609179 0.7001427 0.11330423 prediction 0.555739032149647 Functional Loss - ALDH6A1 ENSG00000119711 CDS Human protein_coding chr14:74531568 chr14:74531566 stopgain 1.000 1 23 hm5C_associated_SNPs_58335 0 0 1 0 2 ALDH6A1 chr14:74531623 3'AG 74531623 Downstream 58bp
chr3 35780974 35780974 1 + G T LUAD 35780972 + 35780952 35780992 41 TACAGGCCAGCAGCTTCCTACAGGAGGATTCTCAGGCTCTG TACAGGCCAGCAGCTTCCTACATGAGGATTCTCAGGCTCTG < 41bp 0.851685631050375 0.573863849406042 0.74953073 0.23877382 prediction 0.555643563288666 Functional Loss - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35780972 chr3:35780974 stopgain 0.769 1 23 hm5C_associated_SNPs_58340 0 0 0 0 1 ARPP21 chr3:35781069 5'GT 35781069 Upstream 96bp
chr3 111797706 111797706 1 + G T UCEC 111797703 + 111797683 111797723 41 GCTCTGTGCAGGCATAATGTCAGGCAAGAGAGATGCCTGCA GCTCTGTGCAGGCATAATGTCAGTCAAGAGAGATGCCTGCA < 41bp 0.777802123568991 0.394710960911535 0.78408444 0.10699099 prediction 0.555604247137981 Functional Loss - TMPRSS7 ENSG00000176040 CDS Human protein_coding chr3:111797703 chr3:111797706 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_58343 0 0 0 0 1 TMPRSS7 chr3:111797725 5'GT 111797725 Upstream 20bp
chr9 35793036 35793036 1 + G T LUSC 35793033 + 35793013 35793053 41 ATGCCCGAGAGCCAGGGGGCCCCGAGCAGGCCACCCACTTC ATGCCCGAGAGCCAGGGGGCCCCTAGCAGGCCACCCACTTC < 41bp 0.777800218685169 0.399346796244571 0.8718511 0.36177796 prediction 0.555600437370338 Functional Loss - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35793033 chr9:35793036 stopgain 0.843 1 24 hm5C_associated_SNPs_58344 0 0 0 0 1 NPR2 chr9:35793072 5'GT 35793072 Upstream 37bp
chr1 149755655 149755655 1 + G T LUSC 149755652 + 149755632 149755672 41 CTGTGAGGTGCTCCATCTGCCTGGGAGCAGCTCTACACAGT CTGTGAGGTGCTCCATCTGCCTGTGAGCAGCTCTACACAGT < 41bp 0.901588882075028 0.623812964600002 0.7765802 0.15404686 prediction 0.555551834950053 Functional Loss - FCGR1A ENSG00000150337 CDS Human protein_coding chr1:149755652 chr1:149755655 nonsynonymous SNV 0.051 1 24 hm5C_associated_SNPs_58348 0 0 0 0 1 FCGR1A chr1:149755559 3'AG 149755559 Downstream 97bp
chr1 1421543 1421543 1 + G T UCEC 1421540 + 1421520 1421560 41 GCCATAGCAACCAGGAACACCAAGAAGAACCGGGGCCTGTA GCCATAGCAACCAGGAACACCAATAAGAACCGGGGCCTGTA < 41bp 0.777766530182752 0.383800562307312 0.8593281 0.7676775 prediction 0.555533060365504 Functional Loss - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1421540 chr1:1421543 nonsynonymous SNV 0.145 5 24 hm5C_associated_SNPs_58352 0 0 1 0 2 ATAD3B chr1:1421490 3'AG 1421490 Downstream 54bp
chr1 1421543 1421543 1 + G T UCEC 1421540 + 1421520 1421560 41 GCCATAGCAACCAGGAACACCAAGAAGAACCGGGGCCTGTA GCCATAGCAACCAGGAACACCAATAAGAACCGGGGCCTGTA < 41bp 0.777766530182752 0.383800562307312 0.8593281 0.7676775 prediction 0.555533060365504 Functional Loss - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1421540 chr1:1421543 nonsynonymous SNV 0.145 5 24 hm5C_associated_SNPs_58352 0 0 1 0 2 ATAD3B chr1:1421615 5'GT 1421615 Upstream 73bp
chr1 38478481 38478481 1 + G T LUSC 38478479 + 38478459 38478499 41 CCAAGGCTGTACAGACATGGCGGCGGCTTTTCGGAAGGCGG CCAAGGCTGTACAGACATGGCGTCGGCTTTTCGGAAGGCGG < 41bp 0.777764845128155 0.44774213673404 0.26590723 0.06976214 prediction 0.55552969025631 Functional Loss - UTP11 ENSG00000183520 CDS Human protein_coding chr1:38478479 chr1:38478481 nonsynonymous SNV 0.987 1 23 hm5C_associated_SNPs_58353 0 0 1 0 1 UTP11 chr1:38478537 5'GT 38478537 Upstream 57bp
chr20 30070205 30070205 1 + G C OV 30070201 + 30070181 30070221 41 CCTCTGAGCTCCGCATCCAGCTGCGGCGCACACATCAGGCA CCTCTGAGCTCCGCATCCAGCTGCCGCGCACACATCAGGCA < 41bp 0.77776213791395 0.495315763813758 0.124738574 0.16133726 prediction 0.5555242758279 Functional Loss - REM1 ENSG00000088320 CDS Human protein_coding chr20:30070201 chr20:30070205 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_58354 0 0 0 0 1 REM1 chr20:30070291 5'GT 30070291 Upstream 87bp
chr16 31138587 31138587 1 + C T LIHC 31138585 + 31138565 31138605 41 CCTGGTATTTCTCACCATTCCCCGAAGACTATGGGAAACAG CCTGGTATTTCTCACCATTCCCTGAAGACTATGGGAAACAG < 41bp 0.784171801182334 0.506421289687546 0.010991037 0.0189417 prediction 0.555501022989576 Functional Loss - KAT8 ENSG00000103510 CDS Human protein_coding chr16:31138585 chr16:31138587 synonymous SNV . 0 23 hm5C_associated_SNPs_58355 0 0 1 0 1 KAT8 chr16:31138674 5'GT 31138674 Upstream 88bp
chr19 51628912 51628912 1 + G T GBM 51628910 + 51628890 51628930 41 CCCTGGAGTCCGGCTGCCCCCAGAATCTGACCTGCTCTGTG CCCTGGAGTCCGGCTGCCCCCATAATCTGACCTGCTCTGTG < 41bp 0.868357881534748 0.590620353475339 0.9189755 0.38629997 prediction 0.555475056118817 Functional Loss - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51628910 chr19:51628912 nonsynonymous SNV 0.014 0 23 hm5C_associated_SNPs_58356 0 0 0 0 1 SIGLEC9 chr19:51628854 3'AG 51628854 Downstream 59bp
chr5 240581 240581 1 + G T LUSC 240579 + 240559 240599 41 AGAACATCGGAACTGCGACTCAGCATGCAGAAGGTAAGAGC AGAACATCGGAACTGCGACTCATCATGCAGAAGGTAAGAGC < 41bp 0.777731775223131 0.45382284635114 0.38836515 0.1890231 prediction 0.555463550446262 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:240579 chr5:240581 nonsynonymous SNV 0.315 1 23 hm5C_associated_SNPs_58357 0 0 1 0 1 SDHA chr5:240591 5'GT 240591 Upstream 11bp
chr10 119003520 119003520 1 + G T KIRP 119003517 + 119003497 119003537 41 GTTATCTGTACAGCATTAAGCATGAGAAGAATGCTACAGAA GTTATCTGTACAGCATTAAGCATTAGAAGAATGCTACAGAA < 41bp 0.777719361554328 0.414223560850529 0.3439492 0.11885035 prediction 0.555438723108655 Functional Loss - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119003517 chr10:119003520 stopgain 0.663 1 24 hm5C_associated_SNPs_58358 0 0 0 0 1 SLC18A2 chr10:119003482 3'AG 119003482 Downstream 39bp
chr7 99987602 99987602 1 + G T UCEC 99987600 + 99987580 99987620 41 CAACCGGCCTCAGGGTCACACAGGGCAAACGACGCTCAGAC CAACCGGCCTCAGGGTCACACATGGCAAACGACGCTCAGAC < 41bp 0.876068524913859 0.598379915148304 0.9087682 0.22330081 prediction 0.555377219531109 Functional Loss - PILRA ENSG00000085514 CDS Human protein_coding chr7:99987600 chr7:99987602 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_58361 0 0 0 0 1 PILRA chr7:99987511 3'AG 99987511 Downstream 92bp
chr6 74189761 74189761 1 + G T COAD 74189759 + 74189739 74189779 41 ATTCTGACCTTATCTACCCACAGGGGTTATCTATGACGCTA ATTCTGACCTTATCTACCCACATGGGTTATCTATGACGCTA < 41bp 0.859864208892471 0.582178168361313 0.9030877 0.7575181 prediction 0.555372081062315 Functional Loss - MTO1 ENSG00000135297 CDS Human protein_coding chr6:74189759 chr6:74189761 nonsynonymous SNV 0.969 4 23 hm5C_associated_SNPs_58362 0 0 1 0 1 MTO1 chr6:74189849 5'GT 74189849 Upstream 89bp
chrX 99854538 99854538 1 + G T rs369386345 99854535 + 99854515 99854555 41 GAATAGAATTTGATCCCATGCTGGATGAGAGAGGTTATTGT GAATAGAATTTGATCCCATGCTGTATGAGAGAGGTTATTGT < 41bp 0.827415913673156 0.549742377928955 0.1854609 0.065181434 prediction 0.555347071488402 Functional Loss - TNMD ENSG00000000005 CDS Human protein_coding chrX:99854535 chrX:99854538 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_58363 0 0 0 0 1 TNMD chrX:99854505 3'AG 99854505 Downstream 34bp
chr5 169023621 169023621 1 + G T LUSC 169023619 + 169023599 169023639 41 CTCAAACTGAATTTGAGCAGCAGGAACGGTTGCTTGCCATG CTCAAACTGAATTTGAGCAGCATGAACGGTTGCTTGCCATG < 41bp 0.777668597463856 0.447699273843429 0.72185326 0.31432816 prediction 0.555337194927711 Functional Loss - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169023619 chr5:169023621 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_58367 0 0 1 0 2 SPDL1 chr5:169023565 3'AG 169023565 Downstream 57bp
chr5 169023621 169023621 1 + G T LUSC 169023619 + 169023599 169023639 41 CTCAAACTGAATTTGAGCAGCAGGAACGGTTGCTTGCCATG CTCAAACTGAATTTGAGCAGCATGAACGGTTGCTTGCCATG < 41bp 0.777668597463856 0.447699273843429 0.72185326 0.31432816 prediction 0.555337194927711 Functional Loss - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169023619 chr5:169023621 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_58367 0 0 1 0 2 SPDL1 chr5:169023705 5'GT 169023705 Upstream 85bp
chr3 122811274 122811274 1 + G T COAD 122811272 + 122811252 122811292 41 GTGAAAGGACAAGGGACCATCTGCTGGGTGGACTGTGGGTA GTGAAAGGACAAGGGACCATCTTCTGGGTGGACTGTGGGTA < 41bp 0.777657833775619 0.445058699346268 0.14013192 0.10976541 prediction 0.555315667551237 Functional Loss - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122811272 chr3:122811274 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_58371 0 0 1 1 2 PDIA5 chr3:122811202 3'AG 122811202 Downstream 73bp
chr3 122811274 122811274 1 + G T COAD 122811272 + 122811252 122811292 41 GTGAAAGGACAAGGGACCATCTGCTGGGTGGACTGTGGGTA GTGAAAGGACAAGGGACCATCTTCTGGGTGGACTGTGGGTA < 41bp 0.777657833775619 0.445058699346268 0.14013192 0.10976541 prediction 0.555315667551237 Functional Loss - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122811272 chr3:122811274 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_58371 0 0 1 1 2 PDIA5 chr3:122811289 5'GT 122811289 Upstream 16bp
chr11 69063147 69063147 1 + G T LUSC 69063145 + 69063125 69063165 41 GGCTCCAAAGCCGGCAGATCCCGGGGCCGCCTCTGTCTCTC GGCTCCAAAGCCGGCAGATCCCTGGGCCGCCTCTGTCTCTC < 41bp 0.865830497152333 0.588177427220976 0.941289 0.2957618 prediction 0.555306139862715 Functional Loss - MYEOV ENSG00000172927 CDS Human protein_coding chr11:69063145 chr11:69063147 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_58373 0 0 0 0 1 MYEOV chr11:69063059 3'AG 69063059 Downstream 89bp
chr16 20787204 20787204 1 + G T UCEC 20787202 + 20787182 20787222 41 CCAGCCTTCTGGTGGATCAACAGAAATGGAGAAGAGATGCG CCAGCCTTCTGGTGGATCAACATAAATGGAGAAGAGATGCG < 41bp 0.777618945333083 0.440808966280328 0.36104906 0.21145678 prediction 0.555237890666165 Functional Loss - ACSM3 ENSG00000005187 CDS Human protein_coding chr16:20787202 chr16:20787204 nonsynonymous SNV 0.966 1 23 hm5C_associated_SNPs_58376 0 0 1 0 1 ACSM3 chr16:20787161 3'AG 20787161 Downstream 44bp
chr8 55534729 55534729 1 + G T COAD 55534726 + 55534706 55534746 41 CTCTGGAGCTGTGGTGGCGGCAGGAAGGGAGCCATTTAAAC CTCTGGAGCTGTGGTGGCGGCAGTAAGGGAGCCATTTAAAC < 41bp 0.77755011887569 0.404909805390465 0.45701754 0.3597628 prediction 0.555100237751381 Functional Loss - RP1 ENSG00000104237 CDS Human protein_coding chr8:55534726 chr8:55534729 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_58381 0 0 0 0 1 RP1 chr8:55534677 3'AG 55534677 Downstream 53bp
chr5 36680530 36680530 1 + G T SARC 36680528 + 36680508 36680548 41 TACCCATCACCTTCAAGTGCCTGGAAGAGAACAATGGCGTG TACCCATCACCTTCAAGTGCCTTGAAGAGAACAATGGCGTG < 41bp 0.777527854133693 0.461465134970142 0.16135061 0.08596632 prediction 0.555055708267385 Functional Loss - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36680528 chr5:36680530 synonymous SNV . 0 23 hm5C_associated_SNPs_58384 0 0 0 0 1 SLC1A3 chr5:36680497 3'AG 36680497 Downstream 34bp
chr10 124339329 124339329 1 + A C rs554773674 124339325 + 124339305 124339345 41 CCTGGATGATGTGCGCTGCTCAGGACATGAGTCCTACCTGT CCTGGATGATGTGCGCTGCTCAGGCCATGAGTCCTACCTGT < 41bp 0.879146353030511 0.601633865288796 0.83146274 0.6229052 prediction 0.555024975483432 Functional Loss - DMBT1 ENSG00000187908 CDS Human protein_coding chr10:124339325 chr10:124339329 synonymous SNV . 0 25 hm5C_associated_SNPs_58385 0 0 0 0 1 DMBT1 chr10:124339417 5'GT 124339417 Upstream 89bp
chr20 34459613 34459613 1 + G T SARC 34459611 + 34459591 34459631 41 GGAAGCTGGCCAGGTCTCATCTGCACTGACTTGCCACTCCT GGAAGCTGGCCAGGTCTCATCTTCACTGACTTGCCACTCCT < 41bp 0.843888735344605 0.56637825609549 0.8375484 0.4878105 prediction 0.555020958498229 Functional Loss - PHF20 ENSG00000025293 CDS Human protein_coding chr20:34459611 chr20:34459613 nonsynonymous SNV 0.925 0 23 hm5C_associated_SNPs_58386 0 0 1 0 1 PHF20 chr20:34459572 3'AG 34459572 Downstream 42bp
chr2 109429113 109429113 1 + G T UCEC 109429110 + 109429090 109429130 41 AATGAAGCAAGTGAAGAAAACAGGAAGATAGACATTCAGGC AATGAAGCAAGTGAAGAAAACAGTAAGATAGACATTCAGGC < 41bp 0.777505968745229 0.421331777603038 0.5886996 0.1797832 prediction 0.555011937490457 Functional Loss - CCDC138 ENSG00000163006 CDS Human protein_coding chr2:109429110 chr2:109429113 nonsynonymous SNV 0.985 2 24 hm5C_associated_SNPs_58389 0 0 1 0 2 CCDC138 chr2:109429087 3'AG 109429087 Downstream 27bp
chr2 109429113 109429113 1 + G T UCEC 109429110 + 109429090 109429130 41 AATGAAGCAAGTGAAGAAAACAGGAAGATAGACATTCAGGC AATGAAGCAAGTGAAGAAAACAGTAAGATAGACATTCAGGC < 41bp 0.777505968745229 0.421331777603038 0.5886996 0.1797832 prediction 0.555011937490457 Functional Loss - CCDC138 ENSG00000163006 CDS Human protein_coding chr2:109429110 chr2:109429113 nonsynonymous SNV 0.985 2 24 hm5C_associated_SNPs_58389 0 0 1 0 2 CCDC138 chr2:109429164 5'GT 109429164 Upstream 52bp
chr11 64128624 64128624 1 + G T COAD 64128621 + 64128601 64128641 41 ACCAGCTCGGCATCATTTACCGAGACCTGAAACTGGAGAAT ACCAGCTCGGCATCATTTACCGATACCTGAAACTGGAGAAT < 41bp 0.777502618061272 0.385254022965436 0.8903444 0.35185316 prediction 0.555005236122543 Functional Loss - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64128621 chr11:64128624 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_58390 0 0 1 0 2 RPS6KA4 chr11:64128606 3'AG 64128606 Downstream 19bp
chr11 64128624 64128624 1 + G T COAD 64128621 + 64128601 64128641 41 ACCAGCTCGGCATCATTTACCGAGACCTGAAACTGGAGAAT ACCAGCTCGGCATCATTTACCGATACCTGAAACTGGAGAAT < 41bp 0.777502618061272 0.385254022965436 0.8903444 0.35185316 prediction 0.555005236122543 Functional Loss - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64128621 chr11:64128624 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_58390 0 0 1 0 2 RPS6KA4 chr11:64128713 5'GT 64128713 Upstream 90bp
chrX 151081014 151081014 1 + G T UCEC 151081011 + 151080991 151081031 41 GCGCAGGCTCTGTGAGGAGGCAAGGTGGGGGCAGGCTGTGC GCGCAGGCTCTGTGAGGAGGCAATGTGGGGGCAGGCTGTGC < 41bp 0.893645384010302 0.616147535713456 0.89944255 0.87772685 prediction 0.554995696593691 Functional Loss - MAGEA4 ENSG00000229967 ncRNA_intronic Human antisense chrX:151081011 chrX:151081014 . . 0 24 hm5C_associated_SNPs_58392 0 0 0 0 1 MAGEA4 chrX:151081014 5'GT 151081014 Upstream 1bp
chr19 45284288 45284288 1 + G T LUSC 45284285 + 45284265 45284305 41 AAGGCCCCCGCCCACACCTTCTGGAGGGAAAGTTGCGGAGC AAGGCCCCCGCCCACACCTTCTGTAGGGAAAGTTGCGGAGC < 41bp 0.903046709435644 0.625550499269012 0.8425479 0.2584234 prediction 0.554992420333265 Functional Loss - CBLC ENSG00000142273 CDS Human protein_coding chr19:45284285 chr19:45284288 nonsynonymous SNV 0.859 5 24 hm5C_associated_SNPs_58393 0 0 0 0 1 CBLC chr19:45284308 5'GT 45284308 Upstream 21bp
chr14 89305829 89305829 1 + G T COAD 89305827 + 89305807 89305847 41 CTTAAAAGCAAGAGCGCTAACAGAAATGGTATACATAGATG CTTAAAAGCAAGAGCGCTAACATAAATGGTATACATAGATG < 41bp 0.777492455174454 0.464765431457649 0.22796118 0.122280896 prediction 0.554984910348907 Functional Loss - TTC8 ENSG00000165533 CDS Human protein_coding chr14:89305827 chr14:89305829 stopgain 0.969 1 23 hm5C_associated_SNPs_58395 0 0 0 0 2 TTC8 chr14:89305796 3'AG 89305796 Downstream 34bp
chr14 89305829 89305829 1 + G T COAD 89305827 + 89305807 89305847 41 CTTAAAAGCAAGAGCGCTAACAGAAATGGTATACATAGATG CTTAAAAGCAAGAGCGCTAACATAAATGGTATACATAGATG < 41bp 0.777492455174454 0.464765431457649 0.22796118 0.122280896 prediction 0.554984910348907 Functional Loss - TTC8 ENSG00000165533 CDS Human protein_coding chr14:89305827 chr14:89305829 stopgain 0.969 1 23 hm5C_associated_SNPs_58395 0 0 0 0 2 TTC8 chr14:89305916 5'GT 89305916 Upstream 88bp
chr10 43659419 43659419 1 + G T ACC 43659416 + 43659396 43659436 41 GCTTGGGACAAGGGAGAGGTCTTGATGTTTTTCTGTGATGT GCTTGGGACAAGGGAGAGGTCTTTATGTTTTTCTGTGATGT < 41bp 0.777489764386331 0.410819859745956 0.32312995 0.24966073 prediction 0.554979528772663 Functional Loss - CSGALNACT2 ENSG00000169826 CDS Human protein_coding chr10:43659416 chr10:43659419 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_58396 0 0 0 0 1 CSGALNACT2 chr10:43659492 5'GT 43659492 Upstream 74bp
chr20 42887240 42887240 1 + G T UCEC 42887237 + 42887217 42887257 41 ATCCCCAAGTACGCCACGGCCGAGATCCGCAGTGAGTGCCA ATCCCCAAGTACGCCACGGCCGATATCCGCAGTGAGTGCCA < 41bp 0.894723065659935 0.617236245755405 0.6109134 0.14078155 prediction 0.55497363980906 Functional Loss - GDAP1L1 ENSG00000124194 CDS Human protein_coding chr20:42887237 chr20:42887240 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_58397 0 0 0 0 1 GDAP1L1 chr20:42887247 5'GT 42887247 Upstream 8bp
chr7 134253073 134253073 1 + G T LUSC 134253071 + 134253051 134253091 41 CGGGAGGACCTGTTCATCGTCAGCAAGGTGCACATGGCGCA CGGGAGGACCTGTTCATCGTCATCAAGGTGCACATGGCGCA < 41bp 0.863491074386917 0.586006275409512 0.2048899 0.066373765 prediction 0.55496959795481 Functional Loss - AKR1B15 ENSG00000227471 CDS Human protein_coding chr7:134253071 chr7:134253073 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_58398 0 0 0 0 1 AKR1B15 chr7:134253077 5'GT 134253077 Upstream 5bp
chr20 17446037 17446037 1 + C T rs146324303 17446035 + 17446015 17446055 41 CCTCCAAACGGAACCAGCTTCACGACGAGGTCCATCAGTGG CCTCCAAACGGAACCAGCTTCATGACGAGGTCCATCAGTGG < 41bp 0.777964116990893 0.50049099868724 0.078011006 0.053763032 prediction 0.554946236607307 Functional Loss - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17446035 chr20:17446037 synonymous SNV . 0 23 hm5C_associated_SNPs_58400 0 0 0 0 1 PCSK2 chr20:17445971 3'AG 17445971 Downstream 67bp
chr22 39440973 39440973 1 + G T UCEC 39440971 + 39440951 39440991 41 TTCCCAGCCTGAGCACCACGCAGAAATGTGCTTCCTCTCTT TTCCCAGCCTGAGCACCACGCATAAATGTGCTTCCTCTCTT < 41bp 0.777471141895345 0.429300043472879 0.5376232 0.12860626 prediction 0.554942283790691 Functional Loss - APOBEC3F ENSG00000128394 CDS Human protein_coding chr22:39440971 chr22:39440973 stopgain 0.047 0 23 hm5C_associated_SNPs_58401 0 0 0 0 1 APOBEC3F chr22:39440946 3'AG 39440946 Downstream 28bp
chr1 86048260 86048260 1 + A T CESC 86048256 + 86048236 86048276 41 TGCCGCCTTGTGAAAGAAACCCGGATTTGTGAGGTGCGGCC TGCCGCCTTGTGAAAGAAACCCGGTTTTGTGAGGTGCGGCC < 41bp 0.827011252656575 0.54955175797778 0.7984889 0.40974346 prediction 0.554918989357591 Functional Loss - CYR61 ENSG00000142871 CDS Human protein_coding chr1:86048256 chr1:86048260 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_58403 0 0 1 0 1 CYR61 chr1:86048307 5'GT 86048307 Upstream 48bp
chr1 175049519 175049519 1 + G T LUAD 175049516 + 175049496 175049536 41 ATAGTCACCCTGCGTAACGTCAAGAATGAAGTTTCTAGCAG ATAGTCACCCTGCGTAACGTCAATAATGAAGTTTCTAGCAG < 41bp 0.777452914518192 0.389733070145445 0.21429858 0.040825576 prediction 0.554905829036384 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175049516 chr1:175049519 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_58404 0 0 0 0 1 TNN chr1:175049562 5'GT 175049562 Upstream 44bp
chr1 24113792 24113792 1 + A C OV 24113788 + 24113768 24113808 41 CGCCGACACGAGGTGACCATCTGCAATTACGAAGCATCTGC CGCCGACACGAGGTGACCATCTGCCATTACGAAGCATCTGC < 41bp 0.912341061867778 0.634905240214479 0.2665973 0.056128412 prediction 0.554871643306597 Functional Loss - PITHD1 ENSG00000057757 CDS Human protein_coding chr1:24113788 chr1:24113792 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_58407 0 0 1 0 1 PITHD1 chr1:24113765 3'AG 24113765 Downstream 28bp
chr1 2328573 2328573 1 + G T GBM 2328570 + 2328550 2328590 41 TCTAGATTTATCAGTCCTGGCTAGACAAGTCCACACCCTAC TCTAGATTTATCAGTCCTGGCTATACAAGTCCACACCCTAC < 41bp 0.777425131923417 0.393157991017719 0.09280959 0.19117144 prediction 0.554850263846835 Functional Loss - RER1 ENSG00000157916 CDS Human protein_coding chr1:2328570 chr1:2328573 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_58408 0 0 1 0 2 RER1 chr1:2328555 3'AG 2328555 Downstream 19bp
chr1 2328573 2328573 1 + G T GBM 2328570 + 2328550 2328590 41 TCTAGATTTATCAGTCCTGGCTAGACAAGTCCACACCCTAC TCTAGATTTATCAGTCCTGGCTATACAAGTCCACACCCTAC < 41bp 0.777425131923417 0.393157991017719 0.09280959 0.19117144 prediction 0.554850263846835 Functional Loss - RER1 ENSG00000157916 CDS Human protein_coding chr1:2328570 chr1:2328573 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_58408 0 0 1 0 2 RER1 chr1:2328659 5'GT 2328659 Upstream 87bp
chr10 94452135 94452135 1 + A C BRCA 94452131 + 94452111 94452151 41 CTTCCCGCTCGCAGGCAAACCTCTACTCTGGAGCCCCTTCT CTTCCCGCTCGCAGGCAAACCTCTCCTCTGGAGCCCCTTCT < 41bp 0.777395875790261 0.355522607528817 0.89830863 0.28777808 prediction 0.554791751580523 Functional Loss - HHEX ENSG00000152804 CDS Human protein_coding chr10:94452131 chr10:94452135 synonymous SNV . 0 25 hm5C_associated_SNPs_58412 0 0 1 0 1 HHEX chr10:94452125 3'AG 94452125 Downstream 11bp
chr15 92987900 92987900 1 + G C BLCA 92987896 + 92987876 92987916 41 GCCCCAGTACAGGAGTATGCCCGGGATGTGGGGCTCAAGAC GCCCCAGTACAGGAGTATGCCCGGCATGTGGGGCTCAAGAC < 41bp 0.796367445589098 0.518993224346766 0.76375747 0.4489242 prediction 0.554748442484663 Functional Loss - ST8SIA2 ENSG00000140557 CDS Human protein_coding chr15:92987896 chr15:92987900 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_58415 0 0 0 0 1 ST8SIA2 chr15:92987866 3'AG 92987866 Downstream 35bp
chr17 17380526 17380526 1 + G C CESC 17380525 + 17380505 17380545 41 GCCTCAGTCACCTGCCCGCGCGAGGGAGGAAGAGAACTACT GCCTCAGTCACCTGCCCGCGCCAGGGAGGAAGAGAACTACT < 41bp 0.777361922985618 0.468153312725616 0.89460856 0.6945094 prediction 0.554723845971235 Functional Loss - MED9 ENSG00000141026 CDS Human protein_coding chr17:17380525 chr17:17380526 synonymous SNV . 0 22 hm5C_associated_SNPs_58416 0 0 0 0 1 MED9 chr17:17380579 5'GT 17380579 Upstream 54bp
chr4 148441086 148441086 1 + G T COAD 148441083 + 148441063 148441103 41 TTCCCCTTTTTGCAGAAGTCCTCGGTGGGGATCACCGTCCT TTCCCCTTTTTGCAGAAGTCCTCTGTGGGGATCACCGTCCT < 41bp 0.777360667326688 0.396578308451251 0.2841177 0.063040525 prediction 0.554721334653375 Functional Loss - EDNRA ENSG00000151617 CDS Human protein_coding chr4:148441083 chr4:148441086 synonymous SNV . 0 24 hm5C_associated_SNPs_58417 0 0 0 0 2 EDNRA chr4:148441003 3'AG 148441003 Downstream 84bp
chr4 148441086 148441086 1 + G T COAD 148441083 + 148441063 148441103 41 TTCCCCTTTTTGCAGAAGTCCTCGGTGGGGATCACCGTCCT TTCCCCTTTTTGCAGAAGTCCTCTGTGGGGATCACCGTCCT < 41bp 0.777360667326688 0.396578308451251 0.2841177 0.063040525 prediction 0.554721334653375 Functional Loss - EDNRA ENSG00000151617 CDS Human protein_coding chr4:148441083 chr4:148441086 synonymous SNV . 0 24 hm5C_associated_SNPs_58417 0 0 0 0 2 EDNRA chr4:148441130 5'GT 148441130 Upstream 45bp
chr2 231264874 231264874 1 + G T LUAD 231264872 + 231264852 231264892 41 TGGATGAGTGTGAGGTGTGCCGGGACGGAGGGGAGCTGTTC TGGATGAGTGTGAGGTGTGCCGTGACGGAGGGGAGCTGTTC < 41bp 0.861879835821255 0.584531320000541 0.8966458 0.28251117 prediction 0.554697031641429 Functional Loss - SP140L ENSG00000185404 CDS Human protein_coding chr2:231264872 chr2:231264874 synonymous SNV . 0 23 hm5C_associated_SNPs_58420 0 0 0 0 2 SP140L chr2:231264842 3'AG 231264842 Downstream 33bp
chr2 231264874 231264874 1 + G T LUAD 231264872 + 231264852 231264892 41 TGGATGAGTGTGAGGTGTGCCGGGACGGAGGGGAGCTGTTC TGGATGAGTGTGAGGTGTGCCGTGACGGAGGGGAGCTGTTC < 41bp 0.861879835821255 0.584531320000541 0.8966458 0.28251117 prediction 0.554697031641429 Functional Loss - SP140L ENSG00000185404 CDS Human protein_coding chr2:231264872 chr2:231264874 synonymous SNV . 0 23 hm5C_associated_SNPs_58420 0 0 0 0 2 SP140L chr2:231264957 5'GT 231264957 Upstream 84bp
chr19 14065218 14065218 1 + A T CESC 14065214 + 14065194 14065234 41 CCCCGGGTGTGCGTGTCCCTCAAGAACATTGTGGATGAGGA CCCCGGGTGTGCGTGTCCCTCAAGTACATTGTGGATGAGGA < 41bp 0.84238691193146 0.565039872057125 0.6705514 0.48416957 prediction 0.554694079748669 Functional Loss - DCAF15 ENSG00000132017 CDS Human protein_coding chr19:14065214 chr19:14065218 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_58421 0 0 1 0 1 DCAF15 chr19:14065152 3'AG 14065152 Downstream 67bp
chr10 7773905 7773905 1 + A T SKCM 7773901 + 7773881 7773921 41 AGGCTCAGAGATTGTGGTGGCAGGAAAATTTGACCCTGCTA AGGCTCAGAGATTGTGGTGGCAGGTAAATTTGACCCTGCTA < 41bp 0.777318845230847 0.473796531377276 0.54970056 0.73787147 prediction 0.554637690461693 Functional Loss - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7773901 chr10:7773905 synonymous SNV . 0 25 hm5C_associated_SNPs_58424 0 0 1 0 1 ITIH2 chr10:7773959 5'GT 7773959 Upstream 55bp
chr18 6868208 6868208 1 + A T COAD 6868204 + 6868184 6868224 41 TTCCAATGGATCACCGGAGCCTGGACAGCCAGTTCAGAATG TTCCAATGGATCACCGGAGCCTGGTCAGCCAGTTCAGAATG < 41bp 0.834156442888028 0.556844091601409 0.06279245 0.042947263 prediction 0.554624702573237 Functional Loss - ARHGAP28 ENSG00000088756 CDS Human protein_coding chr18:6868204 chr18:6868208 synonymous SNV . 0 25 hm5C_associated_SNPs_58425 0 0 0 0 2 ARHGAP28 chr18:6868149 3'AG 6868149 Downstream 60bp
chr18 6868208 6868208 1 + A T COAD 6868204 + 6868184 6868224 41 TTCCAATGGATCACCGGAGCCTGGACAGCCAGTTCAGAATG TTCCAATGGATCACCGGAGCCTGGTCAGCCAGTTCAGAATG < 41bp 0.834156442888028 0.556844091601409 0.06279245 0.042947263 prediction 0.554624702573237 Functional Loss - ARHGAP28 ENSG00000088756 CDS Human protein_coding chr18:6868204 chr18:6868208 synonymous SNV . 0 25 hm5C_associated_SNPs_58425 0 0 0 0 2 ARHGAP28 chr18:6868233 5'GT 6868233 Upstream 26bp
chr10 106976816 106976816 1 + G T LUAD 106976814 + 106976794 106976834 41 ATAAGAGTGCGGGGATCTTCCAGGTGACAGCCTATGCAGAG ATAAGAGTGCGGGGATCTTCCATGTGACAGCCTATGCAGAG < 41bp 0.777277539941281 0.460874160102507 0.86225224 0.15618125 prediction 0.554555079882563 Functional Loss - SORCS3 ENSG00000156395 CDS Human protein_coding chr10:106976814 chr10:106976816 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_58428 0 0 0 1 1 SORCS3 chr10:106976880 5'GT 106976880 Upstream 65bp
chr14 69727161 69727161 1 + G C CESC 69727160 + 69727140 69727180 41 AGGAGGTCGGAGCAGCTCCGCGAGGACCGCACCATCCCGCT AGGAGGTCGGAGCAGCTCCGCCAGGACCGCACCATCCCGCT < 41bp 0.811816190868015 0.534558655023941 0.55880654 0.20969209 prediction 0.554515071688148 Functional Loss - GALNT16 ENSG00000100626 CDS Human protein_coding chr14:69727160 chr14:69727161 nonsynonymous SNV 0.999 0 22 hm5C_associated_SNPs_58429 0 0 0 0 1 GALNT16 chr14:69727184 5'GT 69727184 Upstream 24bp
chr7 63721307 63721307 1 + G T UCEC 63721305 + 63721285 63721325 41 TGAGATGGTAACCAAACACCCAGGTAAGTGAGAGTGGATGA TGAGATGGTAACCAAACACCCATGTAAGTGAGAGTGGATGA < 41bp 0.777255483425995 0.45616274677531 0.7945918 0.13432997 prediction 0.554510966851991 Functional Loss - ZNF679 ENSG00000197123 CDS Human protein_coding chr7:63721305 chr7:63721307 nonsynonymous SNV 0.077 2 23 hm5C_associated_SNPs_58430 0 0 0 0 2 ZNF679 chr7:63721212 3'AG 63721212 Downstream 96bp
chr7 63721307 63721307 1 + G T UCEC 63721305 + 63721285 63721325 41 TGAGATGGTAACCAAACACCCAGGTAAGTGAGAGTGGATGA TGAGATGGTAACCAAACACCCATGTAAGTGAGAGTGGATGA < 41bp 0.777255483425995 0.45616274677531 0.7945918 0.13432997 prediction 0.554510966851991 Functional Loss - ZNF679 ENSG00000197123 CDS Human protein_coding chr7:63721305 chr7:63721307 nonsynonymous SNV 0.077 2 23 hm5C_associated_SNPs_58430 0 0 0 0 2 ZNF679 chr7:63721307 5'GT 63721307 Upstream 1bp
chr18 61649024 61649024 1 + G T STAD 61649022 + 61649002 61649042 41 GTTGTCCTTTGCTGAAGACACTGAAGAGTGCAGGAAGCATA GTTGTCCTTTGCTGAAGACACTTAAGAGTGCAGGAAGCATA < 41bp 0.840893022226867 0.563637834883002 0.16108462 0.13540477 prediction 0.55451037468773 Functional Loss - SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61649022 chr18:61649024 stopgain 0.027 1 23 hm5C_associated_SNPs_58431 0 0 0 0 1 SERPINB8 chr18:61648955 3'AG 61648955 Downstream 70bp
chr10 60562907 60562907 1 + C T SKCM 60562905 + 60562885 60562925 41 CCCTTTGGCTGACAAGAAGGCTCCAGGGAGTGAGCGCGCTG CCCTTTGGCTGACAAGAAGGCTTCAGGGAGTGAGCGCGCTG < 41bp 0.777236921800451 0.484047030858898 0.5229199 0.08929011 prediction 0.554473843600902 Functional Loss - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60562905 chr10:60562907 nonsynonymous SNV 0.965 4 23 hm5C_associated_SNPs_58433 0 0 1 0 2 BICC1 chr10:60562837 3'AG 60562837 Downstream 71bp
chr10 60562907 60562907 1 + C T SKCM 60562905 + 60562885 60562925 41 CCCTTTGGCTGACAAGAAGGCTCCAGGGAGTGAGCGCGCTG CCCTTTGGCTGACAAGAAGGCTTCAGGGAGTGAGCGCGCTG < 41bp 0.777236921800451 0.484047030858898 0.5229199 0.08929011 prediction 0.554473843600902 Functional Loss - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60562905 chr10:60562907 nonsynonymous SNV 0.965 4 23 hm5C_associated_SNPs_58433 0 0 1 0 2 BICC1 chr10:60563002 5'GT 60563002 Upstream 96bp
chr20 30408011 30408011 1 + G C LUAD 30408007 + 30407987 30408027 41 CCCCCCAGACCCAAAGAAAGCTCCGGATCCACCCACCCTGA CCCCCCAGACCCAAAGAAAGCTCCCGATCCACCCACCCTGA < 41bp 0.777234764059674 0.479735582248388 0.20466018 0.08672461 prediction 0.554469528119349 Functional Loss - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30408007 chr20:30408011 synonymous SNV . 0 25 hm5C_associated_SNPs_58434 0 0 0 0 1 MYLK2 chr20:30407929 3'AG 30407929 Downstream 83bp
chr17 18387216 18387216 1 + G T LUAD 18387213 + 18387193 18387233 41 TCCCCTTTTCTGGGACTATCCAAGGGGGTCTCCAGGACGGA TCCCCTTTTCTGGGACTATCCAATGGGGTCTCCAGGACGGA < 41bp 0.777232078734391 0.381273467723421 0.9294282 0.74279106 prediction 0.554464157468782 Functional Loss - LGALS9C ENSG00000171916 CDS Human protein_coding chr17:18387213 chr17:18387216 nonsynonymous SNV 0.023 4 24 hm5C_associated_SNPs_58435 0 0 0 0 2 LGALS9C chr17:18387189 3'AG 18387189 Downstream 28bp
chr17 18387216 18387216 1 + G T LUAD 18387213 + 18387193 18387233 41 TCCCCTTTTCTGGGACTATCCAAGGGGGTCTCCAGGACGGA TCCCCTTTTCTGGGACTATCCAATGGGGTCTCCAGGACGGA < 41bp 0.777232078734391 0.381273467723421 0.9294282 0.74279106 prediction 0.554464157468782 Functional Loss - LGALS9C ENSG00000171916 CDS Human protein_coding chr17:18387213 chr17:18387216 nonsynonymous SNV 0.023 4 24 hm5C_associated_SNPs_58435 0 0 0 0 2 LGALS9C chr17:18387280 5'GT 18387280 Upstream 65bp
chr19 1421160 1421160 1 + G T UCEC 1421158 + 1421138 1421178 41 CTTCAACAGCAGAAAGGACCCAGGAGCGATAACAGTAAATC CTTCAACAGCAGAAAGGACCCATGAGCGATAACAGTAAATC < 41bp 0.860474026786613 0.583259954570221 0.6083866 0.09818494 prediction 0.554428144432785 Functional Loss - DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1421158 chr19:1421160 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_58436 0 0 1 0 3 DAZAP1 chr19:1421147 3'AG 1421147 Downstream 14bp
chr19 1421160 1421160 1 + G T UCEC 1421158 + 1421138 1421178 41 CTTCAACAGCAGAAAGGACCCAGGAGCGATAACAGTAAATC CTTCAACAGCAGAAAGGACCCATGAGCGATAACAGTAAATC < 41bp 0.860474026786613 0.583259954570221 0.6083866 0.09818494 prediction 0.554428144432785 Functional Loss - DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1421158 chr19:1421160 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_58436 0 0 1 0 3 DAZAP1 chr19:1421150 3'AG 1421150 Downstream 11bp
chr19 1421160 1421160 1 + G T UCEC 1421158 + 1421138 1421178 41 CTTCAACAGCAGAAAGGACCCAGGAGCGATAACAGTAAATC CTTCAACAGCAGAAAGGACCCATGAGCGATAACAGTAAATC < 41bp 0.860474026786613 0.583259954570221 0.6083866 0.09818494 prediction 0.554428144432785 Functional Loss - DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1421158 chr19:1421160 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_58436 0 0 1 0 3 DAZAP1 chr19:1421257 5'GT 1421257 Upstream 98bp
chr1 193091432 193091432 1 + G T UCEC 193091429 + 193091409 193091449 41 TTCGGGGAGTTCTCCTGGCCCAAGAATGTGAAGACCAACTA TTCGGGGAGTTCTCCTGGCCCAATAATGTGAAGACCAACTA < 41bp 0.874084982063424 0.596872502629105 0.2662046 0.536264 prediction 0.554424958868638 Functional Loss - CDC73 ENSG00000134371 CDS Human protein_coding chr1:193091429 chr1:193091432 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_58437 0 0 1 0 1 CDC73 chr1:193091461 5'GT 193091461 Upstream 30bp
chr3 15475961 15475961 1 + C T BLCA 15475959 + 15475939 15475979 41 ACCACCTATGCCATTCAGAGCTCCAACGAAGCCTCCAGTTG ACCACCTATGCCATTCAGAGCTTCAACGAAGCCTCCAGTTG < 41bp 0.777202585784983 0.49483108471388 0.4233127 0.03434229 prediction 0.554405171569965 Functional Loss - EAF1 ENSG00000144597 CDS Human protein_coding chr3:15475959 chr3:15475961 nonsynonymous SNV 0.981 3 23 hm5C_associated_SNPs_58438 0 0 1 0 1 EAF1 chr3:15476045 5'GT 15476045 Upstream 85bp
chr19 6829812 6829812 1 + C T UCEC 6829810 + 6829790 6829830 41 CTTCCAGGTATGCCTTCCTGCTCGACAAAGCTCTACTCATC CTTCCAGGTATGCCTTCCTGCTTGACAAAGCTCTACTCATC < 41bp 0.783414634772683 0.506220471109626 0.11364859 0.10535738 prediction 0.554388327326113 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6829810 chr19:6829812 synonymous SNV . 0 23 hm5C_associated_SNPs_58441 0 0 0 0 1 VAV1 chr19:6829797 3'AG 6829797 Downstream 16bp
chr7 23221774 23221774 1 + G C STAD 23221773 + 23221753 23221793 41 CGGTGCTGGAACGAACATCCCGGTGCTAGGGGTGCAGGAGG CGGTGCTGGAACGAACATCCCCGTGCTAGGGGTGCAGGAGG < 41bp 0.810753590040101 0.533566628561121 0.78800267 0.31664824 prediction 0.554373922957961 Functional Loss - NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221773 chr7:23221774 nonsynonymous SNV 0.441 0 22 hm5C_associated_SNPs_58443 0 0 1 0 1 NUPL2 chr7:23221825 5'GT 23221825 Upstream 52bp
chr19 10904445 10904445 1 + G T LGG 10904443 + 10904423 10904463 41 TGAGAAGAGGATCGAGGGCTCAGGAGATCAGGTGGACACTC TGAGAAGAGGATCGAGGGCTCATGAGATCAGGTGGACACTC < 41bp 0.839242282899412 0.562058652486686 0.92817557 0.8865572 prediction 0.554367260825453 Functional Loss - DNM2 ENSG00000079805 CDS Human protein_coding chr19:10904443 chr19:10904445 stopgain 0.992 1 23 hm5C_associated_SNPs_58445 0 0 1 0 2 DNM2 chr19:10904396 3'AG 10904396 Downstream 50bp
chr19 10904445 10904445 1 + G T LGG 10904443 + 10904423 10904463 41 TGAGAAGAGGATCGAGGGCTCAGGAGATCAGGTGGACACTC TGAGAAGAGGATCGAGGGCTCATGAGATCAGGTGGACACTC < 41bp 0.839242282899412 0.562058652486686 0.92817557 0.8865572 prediction 0.554367260825453 Functional Loss - DNM2 ENSG00000079805 CDS Human protein_coding chr19:10904443 chr19:10904445 stopgain 0.992 1 23 hm5C_associated_SNPs_58445 0 0 1 0 2 DNM2 chr19:10904531 5'GT 10904531 Upstream 87bp
chr1 46736385 46736385 1 + A T LUAD 46736381 + 46736361 46736401 41 AATTGCCAATTTTGAAGGGTCGAGACGCTGCTGCTAGTGAG AATTGCCAATTTTGAAGGGTCGAGTCGCTGCTGCTAGTGAG < 41bp 0.777177219759698 0.465749191317474 0.43817958 0.15079084 prediction 0.554354439519395 Functional Loss - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46736381 chr1:46736385 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_58447 0 0 1 0 2 RAD54L chr1:46736331 3'AG 46736331 Downstream 55bp
chr1 46736385 46736385 1 + A T LUAD 46736381 + 46736361 46736401 41 AATTGCCAATTTTGAAGGGTCGAGACGCTGCTGCTAGTGAG AATTGCCAATTTTGAAGGGTCGAGTCGCTGCTGCTAGTGAG < 41bp 0.777177219759698 0.465749191317474 0.43817958 0.15079084 prediction 0.554354439519395 Functional Loss - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46736381 chr1:46736385 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_58447 0 0 1 0 2 RAD54L chr1:46736457 5'GT 46736457 Upstream 73bp
chr1 1223365 1223365 1 + G T LIHC 1223363 + 1223343 1223383 41 CCCTACGGCCACTGCACCGCCGGCGGGGAAGGCGTGGAGGT CCCTACGGCCACTGCACCGCCGTCGGGGAAGGCGTGGAGGT < 41bp 0.77715313719115 0.441287809615548 0.75754786 0.5840434 prediction 0.5543062743823 Functional Loss - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1223363 chr1:1223365 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_58453 0 0 1 0 2 SCNN1D chr1:1223319 3'AG 1223319 Downstream 47bp
chr1 1223365 1223365 1 + G T LIHC 1223363 + 1223343 1223383 41 CCCTACGGCCACTGCACCGCCGGCGGGGAAGGCGTGGAGGT CCCTACGGCCACTGCACCGCCGTCGGGGAAGGCGTGGAGGT < 41bp 0.77715313719115 0.441287809615548 0.75754786 0.5840434 prediction 0.5543062743823 Functional Loss - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1223363 chr1:1223365 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_58453 0 0 1 0 2 SCNN1D chr1:1223417 5'GT 1223417 Upstream 53bp
chr18 10549030 10549030 1 + G T UCEC 10549028 + 10549008 10549048 41 AGCTTCTTGAAGGTTATGACCAGCAAGACCAAGATCAGGTG AGCTTCTTGAAGGTTATGACCATCAAGACCAAGATCAGGTG < 41bp 0.847008056722117 0.569859196793866 0.16376638 0.054290414 prediction 0.554297719856503 Functional Loss - NAPG ENSG00000134265 CDS Human protein_coding chr18:10549028 chr18:10549030 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_58455 0 0 1 0 2 NAPG chr18:10548964 3'AG 10548964 Downstream 67bp
chr18 10549030 10549030 1 + G T UCEC 10549028 + 10549008 10549048 41 AGCTTCTTGAAGGTTATGACCAGCAAGACCAAGATCAGGTG AGCTTCTTGAAGGTTATGACCATCAAGACCAAGATCAGGTG < 41bp 0.847008056722117 0.569859196793866 0.16376638 0.054290414 prediction 0.554297719856503 Functional Loss - NAPG ENSG00000134265 CDS Human protein_coding chr18:10549028 chr18:10549030 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_58455 0 0 1 0 2 NAPG chr18:10549093 5'GT 10549093 Upstream 64bp
chr1 89849742 89849742 1 + A C rs959460 89849738 + 89849718 89849758 41 AGCAGCAACAGATGGAGGCTCAAGATAAGAGTCGCAAGGAA AGCAGCAACAGATGGAGGCTCAAGCTAAGAGTCGCAAGGAA < 41bp 0.777148104818333 0.374289161591415 0.5829964 0.60420734 prediction 0.554296209636665 Functional Loss - GBP6 ENSG00000183347 CDS Human protein_coding chr1:89849738 chr1:89849742 nonsynonymous SNV 0.014 1 25 hm5C_associated_SNPs_58456 0 0 0 0 1 GBP6 chr1:89849652 3'AG 89849652 Downstream 91bp
chr22 24323150 24323150 1 + A C UCEC 24323146 + 24323126 24323166 41 TCTTCCTCTTCAGGGCAGCACAAGAGCAAGGAGTTCTTGCA TCTTCCTCTTCAGGGCAGCACAAGCGCAAGGAGTTCTTGCA < 41bp 0.777148046687644 0.381992940177908 0.45468313 0.34005368 prediction 0.554296093375288 Functional Loss - GSTT2;GSTT2B ENSG00000099984 CDS Human polymorphic_pseudogene chr22:24323146 chr22:24323150 nonsynonymous SNV 0.065 1 25 hm5C_associated_SNPs_58457 0 0 0 0 2 GSTT2;GSTT2B chr22:24323139 3'AG 24323139 Downstream 12bp
chr22 24323150 24323150 1 + A C UCEC 24323146 + 24323126 24323166 41 TCTTCCTCTTCAGGGCAGCACAAGAGCAAGGAGTTCTTGCA TCTTCCTCTTCAGGGCAGCACAAGCGCAAGGAGTTCTTGCA < 41bp 0.777148046687644 0.381992940177908 0.45468313 0.34005368 prediction 0.554296093375288 Functional Loss - GSTT2;GSTT2B ENSG00000099984 CDS Human polymorphic_pseudogene chr22:24323146 chr22:24323150 nonsynonymous SNV 0.065 1 25 hm5C_associated_SNPs_58457 0 0 0 0 2 GSTT2;GSTT2B chr22:24323226 5'GT 24323226 Upstream 77bp
chr17 48557111 48557111 1 + G T SARC 48557109 + 48557089 48557129 41 GCTCAGACGCTGCTGCGGCTCAGCGGGGTGCAACGGTGGGT GCTCAGACGCTGCTGCGGCTCATCGGGGTGCAACGGTGGGT < 41bp 0.868804938695288 0.591674546447146 0.7608798 0.44141614 prediction 0.554260784496284 Functional Loss - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48557109 chr17:48557111 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_58459 0 0 1 0 1 RSAD1 chr17:48557123 5'GT 48557123 Upstream 13bp
chr14 100793541 100793541 1 + G T SKCM 100793539 + 100793519 100793559 41 TGCTAGGTGTGGGGCTTCTACCGGGGCCTCTCGCTGCCCGT TGCTAGGTGTGGGGCTTCTACCTGGGCCTCTCGCTGCCCGT < 41bp 0.851304203462517 0.574192381519375 0.9503819 0.8921857 prediction 0.554223643886283 Functional Loss - SLC25A47 ENSG00000140107 CDS Human protein_coding chr14:100793539 chr14:100793541 nonsynonymous SNV 0.853 3 23 hm5C_associated_SNPs_58461 0 0 1 0 1 SLC25A47 chr14:100793525 3'AG 100793525 Downstream 17bp
chr1 115455750 115455750 1 + G T UCEC 115455747 + 115455727 115455767 41 AGTGATATGACCCTAGAACTCAAGAATCAGCAAGAAGATAT AGTGATATGACCCTAGAACTCAATAATCAGCAAGAAGATAT < 41bp 0.835586887369827 0.558497613540535 0.36017236 0.1649574 prediction 0.554178547658584 Functional Loss - SYCP1 ENSG00000198765 CDS Human protein_coding chr1:115455747 chr1:115455750 nonsynonymous SNV 0.964 2 24 hm5C_associated_SNPs_58462 0 0 0 0 2 SYCP1 chr1:115455654 3'AG 115455654 Downstream 97bp
chr1 115455750 115455750 1 + G T UCEC 115455747 + 115455727 115455767 41 AGTGATATGACCCTAGAACTCAAGAATCAGCAAGAAGATAT AGTGATATGACCCTAGAACTCAATAATCAGCAAGAAGATAT < 41bp 0.835586887369827 0.558497613540535 0.36017236 0.1649574 prediction 0.554178547658584 Functional Loss - SYCP1 ENSG00000198765 CDS Human protein_coding chr1:115455747 chr1:115455750 nonsynonymous SNV 0.964 2 24 hm5C_associated_SNPs_58462 0 0 0 0 2 SYCP1 chr1:115455771 5'GT 115455771 Upstream 22bp
chr6 151939095 151939095 1 + G T LIHC 151939093 + 151939073 151939113 41 ATATTGCAGCTGGCAGACTTCAGGGAGGTGGTGTCGCAGAT ATATTGCAGCTGGCAGACTTCATGGAGGTGGTGTCGCAGAT < 41bp 0.854281506831043 0.577234563670175 0.89311576 0.5379439 prediction 0.554093886321736 Functional Loss - CCDC170 ENSG00000120262 CDS Human protein_coding chr6:151939093 chr6:151939095 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_58467 0 0 0 0 1 CCDC170 chr6:151939082 3'AG 151939082 Downstream 14bp
chr19 58563899 58563899 1 + A T OV 58563895 + 58563875 58563915 41 GGATGCAGTGGCAGCAGCCCCAGCACTCCCCGAGGAAAGTG GGATGCAGTGGCAGCAGCCCCAGCTCTCCCCGAGGAAAGTG < 41bp 0.777041772576557 0.46952999723973 0.4151455 0.25531048 prediction 0.554083545153115 Functional Loss - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58563895 chr19:58563899 synonymous SNV . 0 25 hm5C_associated_SNPs_58468 0 0 0 0 2 ZSCAN1 chr19:58563858 3'AG 58563858 Downstream 42bp
chr19 58563899 58563899 1 + A T OV 58563895 + 58563875 58563915 41 GGATGCAGTGGCAGCAGCCCCAGCACTCCCCGAGGAAAGTG GGATGCAGTGGCAGCAGCCCCAGCTCTCCCCGAGGAAAGTG < 41bp 0.777041772576557 0.46952999723973 0.4151455 0.25531048 prediction 0.554083545153115 Functional Loss - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58563895 chr19:58563899 synonymous SNV . 0 25 hm5C_associated_SNPs_58468 0 0 0 0 2 ZSCAN1 chr19:58563996 5'GT 58563996 Upstream 98bp
chr19 37966894 37966894 1 + A T LUSC 37966890 + 37966870 37966910 41 AATGTGATGCTAGAGAACTACAGGATCTTGGTATCACTGGG AATGTGATGCTAGAGAACTACAGGTTCTTGGTATCACTGGG < 41bp 0.820499070839468 0.54346543643647 0.3382514 0.27913558 prediction 0.554067268805994 Functional Loss - ZNF570 ENSG00000171827 CDS Human protein_coding chr19:37966890 chr19:37966894 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_58472 0 0 1 0 1 ZNF570 chr19:37966909 5'GT 37966909 Upstream 16bp
chr7 2565089 2565089 1 + G C SKCM 2565085 + 2565065 2565105 41 ACGATGACAACTACGTCAACCTGCGGGCCCTGCTGCGGCTG ACGATGACAACTACGTCAACCTGCCGGCCCTGCTGCGGCTG < 41bp 0.789423573735902 0.512398221996449 0.085390925 0.05019936 prediction 0.554050703478905 Functional Loss - LFNG ENSG00000106003 CDS Human protein_coding chr7:2565085 chr7:2565089 nonsynonymous SNV 0.332 0 25 hm5C_associated_SNPs_58473 0 0 0 0 1 LFNG chr7:2565048 3'AG 2565048 Downstream 42bp
chr17 36909499 36909499 1 + A T rs4907 36909495 + 36909475 36909515 41 AGGCGCTTCGGGATCCAGGCCCAGATGGTGACCACGGACTT AGGCGCTTCGGGATCCAGGCCCAGTTGGTGACCACGGACTT < 41bp 0.77702498298886 0.455759321103 0.35050032 0.31807604 prediction 0.55404996597772 Functional Loss - PSMB3 ENSG00000108294 CDS Human other chr17:36909495 chr17:36909499 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_58474 0 0 1 0 1 PSMB3 chr17:36909403 3'AG 36909403 Downstream 97bp
chr15 40657052 40657052 1 + G C HNSC 40657051 + 40657031 40657071 41 CCCTGCAGGGCTTTGAGCCACGGGACACAGACATTGGGAGC CCCTGCAGGGCTTTGAGCCACCGGACACAGACATTGGGAGC < 41bp 0.835682526537653 0.558658249610428 0.5729311 0.29720098 prediction 0.55404855385445 Functional Loss - DISP2 ENSG00000140323 CDS Human protein_coding chr15:40657051 chr15:40657052 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_58475 0 0 1 0 1 DISP2 chr15:40657039 3'AG 40657039 Downstream 14bp
chr1 22417994 22417994 1 + G T CESC 22417992 + 22417972 22418012 41 CCAGAACCGAAGAAGAGCCGCAGGTGTGTGCTGCTATGAAC CCAGAACCGAAGAAGAGCCGCATGTGTGTGCTGCTATGAAC < 41bp 0.777007659424592 0.458440259080926 0.9269049 0.7915389 prediction 0.554015318849185 Functional Loss - CDC42 ENSG00000070831 CDS Human protein_coding chr1:22417992 chr1:22417994 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_58477 0 0 1 0 1 CDC42 chr1:22417921 3'AG 22417921 Downstream 74bp
chr1 22986092 22986092 1 + G T GBM 22986089 + 22986069 22986109 41 CCCGGGTATCCCTGGGACACCTGGCCCCGATGGCCAACCTG CCCGGGTATCCCTGGGACACCTGTCCCCGATGGCCAACCTG < 41bp 0.776985265385626 0.379661099414502 0.6001383 0.50384265 prediction 0.553970530771251 Functional Loss - C1QB ENSG00000173369 CDS Human protein_coding chr1:22986089 chr1:22986092 nonsynonymous SNV 0.137 5 24 hm5C_associated_SNPs_58480 0 0 0 0 1 C1QB chr1:22986136 5'GT 22986136 Upstream 45bp
chr19 7742605 7742605 1 + G T LUAD 7742602 + 7742582 7742622 41 AAGGGTGGTCATTCACGACCCACGAGCCAAGGTGAGCAGAC AAGGGTGGTCATTCACGACCCACTAGCCAAGGTGAGCAGAC < 41bp 0.896758175881986 0.619775756424463 0.03685856 0.009299725 prediction 0.553964838915047 Functional Loss - MCEMP1 ENSG00000183019 CDS Human protein_coding chr19:7742602 chr19:7742605 synonymous SNV . 0 24 hm5C_associated_SNPs_58481 0 0 0 0 2 MCEMP1 chr19:7742523 3'AG 7742523 Downstream 83bp
chr19 7742605 7742605 1 + G T LUAD 7742602 + 7742582 7742622 41 AAGGGTGGTCATTCACGACCCACGAGCCAAGGTGAGCAGAC AAGGGTGGTCATTCACGACCCACTAGCCAAGGTGAGCAGAC < 41bp 0.896758175881986 0.619775756424463 0.03685856 0.009299725 prediction 0.553964838915047 Functional Loss - MCEMP1 ENSG00000183019 CDS Human protein_coding chr19:7742602 chr19:7742605 synonymous SNV . 0 24 hm5C_associated_SNPs_58481 0 0 0 0 2 MCEMP1 chr19:7742612 5'GT 7742612 Upstream 8bp
chr1 155288031 155288031 1 + C T DLBC 155288029 + 155288009 155288049 41 GTATCTACCGCCTGCTGAAGCTCTATTGCCGGGAGCAGCCC GTATCTACCGCCTGCTGAAGCTTTATTGCCGGGAGCAGCCC < 41bp 0.782708736772665 0.505732243313388 0.37069649 0.051750034 prediction 0.553952986918555 Functional Loss - FDPS ENSG00000160752 CDS Human protein_coding chr1:155288029 chr1:155288031 synonymous SNV . 0 23 hm5C_associated_SNPs_58484 0 0 1 0 2 FDPS chr1:155287960 3'AG 155287960 Downstream 72bp
chr1 155288031 155288031 1 + C T DLBC 155288029 + 155288009 155288049 41 GTATCTACCGCCTGCTGAAGCTCTATTGCCGGGAGCAGCCC GTATCTACCGCCTGCTGAAGCTTTATTGCCGGGAGCAGCCC < 41bp 0.782708736772665 0.505732243313388 0.37069649 0.051750034 prediction 0.553952986918555 Functional Loss - FDPS ENSG00000160752 CDS Human protein_coding chr1:155288029 chr1:155288031 synonymous SNV . 0 23 hm5C_associated_SNPs_58484 0 0 1 0 2 FDPS chr1:155288082 5'GT 155288082 Upstream 52bp
chr15 25477432 25477432 1 + G T LUAD 25477430 + 25477410 25477450 41 GGTTCCCAGCCCCCGATGCGCTGAAGCTCAAGCCTTTCCTG GGTTCCCAGCCCCCGATGCGCTTAAGCTCAAGCCTTTCCTG < 41bp 0.776970400080149 0.452510636458525 0.345005 0.120835125 prediction 0.553940800160298 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25477430 chr15:25477432 . . 0 23 hm5C_associated_SNPs_58486 0 0 0 0 2 SNHG14 chr15:25477347 3'AG 25477347 Downstream 86bp
chr15 25477432 25477432 1 + G T LUAD 25477430 + 25477410 25477450 41 GGTTCCCAGCCCCCGATGCGCTGAAGCTCAAGCCTTTCCTG GGTTCCCAGCCCCCGATGCGCTTAAGCTCAAGCCTTTCCTG < 41bp 0.776970400080149 0.452510636458525 0.345005 0.120835125 prediction 0.553940800160298 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25477430 chr15:25477432 . . 0 23 hm5C_associated_SNPs_58486 0 0 0 0 2 SNHG14 chr15:25477478 5'GT 25477478 Upstream 47bp
chr12 10132045 10132045 1 + A T KIRC 10132041 + 10132021 10132061 41 CTGATGAGTAACATGAATATCTCCAACAAGATCAGGAACCT CTGATGAGTAACATGAATATCTCCTACAAGATCAGGAACCT < 41bp 0.853140042585324 0.5761854092096 0.96899533 0.074837595 prediction 0.553909266751449 Functional Loss - CLEC12A ENSG00000172322 CDS Human protein_coding chr12:10132041 chr12:10132045 nonsynonymous SNV 0.147 2 25 hm5C_associated_SNPs_58488 0 0 0 0 1 CLEC12A chr12:10132123 5'GT 10132123 Upstream 79bp
chr9 95381800 95381800 1 - C A UCEC 95381803 - 95381783 95381823 41 ACTGCCAAGGACTGCTCCATCATGATTGCACTGTCTCCCTG ACTGCCAAGGACTGCTCCATCATTATTGCACTGTCTCCCTG < 41bp 0.904067358346798 0.627131950394907 0.36811298 0.06961173 prediction 0.553870815903782 Functional Loss - IPPK ENSG00000127080 CDS Human protein_coding chr9:95381803 chr9:95381800 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_58490 0 0 1 0 2 IPPK chr9:95381768 5'GT 95381768 Upstream 33bp
chr9 95381800 95381800 1 - C A UCEC 95381803 - 95381783 95381823 41 ACTGCCAAGGACTGCTCCATCATGATTGCACTGTCTCCCTG ACTGCCAAGGACTGCTCCATCATTATTGCACTGTCTCCCTG < 41bp 0.904067358346798 0.627131950394907 0.36811298 0.06961173 prediction 0.553870815903782 Functional Loss - IPPK ENSG00000127080 CDS Human protein_coding chr9:95381803 chr9:95381800 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_58490 0 0 1 0 2 IPPK chr9:95381847 3'AG 95381847 Downstream 48bp
chr6 168442690 168442690 1 + G T UCEC 168442688 + 168442668 168442708 41 CACCCTCCCCAGGGAGCAAACAGAGGCAGGAAGGGCAGGAA CACCCTCCCCAGGGAGCAAACATAGGCAGGAAGGGCAGGAA < 41bp 0.88095852092322 0.604028529077287 0.93396556 0.8754351 prediction 0.553859983691866 Functional Loss - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168442688 chr6:168442690 stopgain 0.001 0 23 hm5C_associated_SNPs_58492 0 0 0 0 1 KIF25 chr6:168442649 3'AG 168442649 Downstream 42bp
chr17 2280078 2280078 1 + G T ACC 2280076 + 2280056 2280096 41 ATGTGCAGGGCATGTGCGATCTGCTGGCGCCTCTCCTGGTC ATGTGCAGGGCATGTGCGATCTTCTGGCGCCTCTCCTGGTC < 41bp 0.776928488505729 0.440204182634475 0.21512142 0.20372313 prediction 0.553856977011459 Functional Loss - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2280076 chr17:2280078 synonymous SNV . 0 23 hm5C_associated_SNPs_58493 0 0 1 0 2 SGSM2 chr17:2280027 3'AG 2280027 Downstream 52bp
chr17 2280078 2280078 1 + G T ACC 2280076 + 2280056 2280096 41 ATGTGCAGGGCATGTGCGATCTGCTGGCGCCTCTCCTGGTC ATGTGCAGGGCATGTGCGATCTTCTGGCGCCTCTCCTGGTC < 41bp 0.776928488505729 0.440204182634475 0.21512142 0.20372313 prediction 0.553856977011459 Functional Loss - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2280076 chr17:2280078 synonymous SNV . 0 23 hm5C_associated_SNPs_58493 0 0 1 0 2 SGSM2 chr17:2280109 5'GT 2280109 Upstream 32bp
chr19 51649338 51649338 1 + G T SARC 51649336 + 51649316 51649356 41 CTCAGAACTCTCTGGGTTCCCAGCACGTTTCCCTGAACCTC CTCAGAACTCTCTGGGTTCCCATCACGTTTCCCTGAACCTC < 41bp 0.86030078637263 0.583375882822787 0.45113647 0.121285945 prediction 0.553849807099687 Functional Loss - SIGLEC7 ENSG00000168995 CDS Human protein_coding chr19:51649336 chr19:51649338 nonsynonymous SNV 0.169 1 23 hm5C_associated_SNPs_58495 0 0 0 0 1 SIGLEC7 chr19:51649378 5'GT 51649378 Upstream 41bp
chr3 157288986 157288986 1 + G T UCEC 157288984 + 157288964 157289004 41 AGTCAGCTCTTTGTAGCCTACAGAAATGGAAGAGTGGATGA AGTCAGCTCTTTGTAGCCTACATAAATGGAAGAGTGGATGA < 41bp 0.776923466428782 0.456027999927205 0.13381293 0.07589391 prediction 0.553846932857564 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157288984 chr3:157288986 nonsynonymous SNV 0.066 2 23 hm5C_associated_SNPs_58496 0 0 0 0 1 PQLC2L chr3:157288966 3'AG 157288966 Downstream 21bp
chr12 57963926 57963926 1 + A T SKCM 57963922 + 57963902 57963942 41 ACGAGGAGGAGATCCGCCGTCTCTATAAGCAGCTTGACGAC ACGAGGAGGAGATCCGCCGTCTCTTTAAGCAGCTTGACGAC < 41bp 0.776899101739961 0.430950546870542 0.9248642 0.32823783 prediction 0.553798203479922 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57963922 chr12:57963926 nonsynonymous SNV 0.981 3 25 hm5C_associated_SNPs_58499 0 0 1 0 1 KIF5A chr12:57963945 5'GT 57963945 Upstream 20bp
chr2 113404703 113404703 1 + G T GBM 113404700 + 113404680 113404720 41 TGGAGATGTACAACTCGACTCAAGGGCTGCTGATGGCCGGC TGGAGATGTACAACTCGACTCAATGGCTGCTGATGGCCGGC < 41bp 0.77689596707879 0.383742953336884 0.47165325 0.05256632 prediction 0.553791934157579 Functional Loss - SLC20A1 ENSG00000144136 CDS Human protein_coding chr2:113404700 chr2:113404703 nonsynonymous SNV 0.007 2 24 hm5C_associated_SNPs_58500 0 0 1 0 1 SLC20A1 chr2:113404739 5'GT 113404739 Upstream 37bp
chr19 36352134 36352134 1 + G T LUSC 36352131 + 36352111 36352151 41 TCGGGCCTGCGGGGCGGCGCCGCGGAGGCTCGGCTGACTGT TCGGGCCTGCGGGGCGGCGCCGCTGAGGCTCGGCTGACTGT < 41bp 0.906034058742817 0.629141004283628 0.8367277 0.16091534 prediction 0.553786108918379 Functional Loss - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36352131 chr19:36352134 synonymous SNV . 0 24 hm5C_associated_SNPs_58501 0 0 0 0 1 KIRREL2 chr19:36352156 5'GT 36352156 Upstream 23bp
chr17 42254125 42254125 1 + G T BLCA 42254122 + 42254102 42254142 41 CCAGGTGCGCCAAGTTGCTGCTGGAAGCAGGAGCGACGGTG CCAGGTGCGCCAAGTTGCTGCTGTAAGCAGGAGCGACGGTG < 41bp 0.776888624615943 0.391212297536263 0.29787534 0.16279352 prediction 0.553777249231887 Functional Loss - ASB16 ENSG00000161664 CDS Human protein_coding chr17:42254122 chr17:42254125 stopgain 0.965 0 24 hm5C_associated_SNPs_58502 0 0 0 0 1 ASB16 chr17:42254106 3'AG 42254106 Downstream 20bp
chr1 243579084 243579084 1 + A T UCEC 243579080 + 243579060 243579100 41 TTCAGGCCCAGCAAAGAGAGCAGGAGCTGACACAGAAGATA TTCAGGCCCAGCAAAGAGAGCAGGTGCTGACACAGAAGATA < 41bp 0.823658228682794 0.546773324726232 0.6003484 0.7750958 prediction 0.553769807913123 Functional Loss - SDCCAG8 ENSG00000054282 CDS Human protein_coding chr1:243579080 chr1:243579084 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_58504 0 0 1 0 2 SDCCAG8 chr1:243579004 3'AG 243579004 Downstream 81bp
chr1 243579084 243579084 1 + A T UCEC 243579080 + 243579060 243579100 41 TTCAGGCCCAGCAAAGAGAGCAGGAGCTGACACAGAAGATA TTCAGGCCCAGCAAAGAGAGCAGGTGCTGACACAGAAGATA < 41bp 0.823658228682794 0.546773324726232 0.6003484 0.7750958 prediction 0.553769807913123 Functional Loss - SDCCAG8 ENSG00000054282 CDS Human protein_coding chr1:243579080 chr1:243579084 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_58504 0 0 1 0 2 SDCCAG8 chr1:243579131 5'GT 243579131 Upstream 48bp
chr19 36145572 36145572 1 + G T LUSC 36145570 + 36145550 36145590 41 CAGTCCCTCTGCCCCACATCCTGGGTATGTGCCTCCTGCCA CAGTCCCTCTGCCCCACATCCTTGGTATGTGCCTCCTGCCA < 41bp 0.86438828298278 0.587504360544602 0.82247055 0.13577944 prediction 0.553767844876354 Functional Loss - COX6B1 ENSG00000126267 CDS Human protein_coding chr19:36145570 chr19:36145572 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_58505 0 0 1 0 2 COX6B1 chr19:36145473 3'AG 36145473 Downstream 100bp
chr19 36145572 36145572 1 + G T LUSC 36145570 + 36145550 36145590 41 CAGTCCCTCTGCCCCACATCCTGGGTATGTGCCTCCTGCCA CAGTCCCTCTGCCCCACATCCTTGGTATGTGCCTCCTGCCA < 41bp 0.86438828298278 0.587504360544602 0.82247055 0.13577944 prediction 0.553767844876354 Functional Loss - COX6B1 ENSG00000126267 CDS Human protein_coding chr19:36145570 chr19:36145572 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_58505 0 0 1 0 2 COX6B1 chr19:36145573 5'GT 36145573 Upstream 2bp
chr1 175046954 175046954 1 + G T UCEC 175046951 + 175046931 175046971 41 GTAGTGCCCAGCGCTGCTGCCAGGGAGTCACTGGTGAGCTC GTAGTGCCCAGCGCTGCTGCCAGTGAGTCACTGGTGAGCTC < 41bp 0.776876274552825 0.380955302202383 0.88979197 0.32952026 prediction 0.553752549105651 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175046951 chr1:175046954 stopgain 0.781 1 24 hm5C_associated_SNPs_58506 0 0 0 0 1 TNN chr1:175046963 5'GT 175046963 Upstream 10bp
chr9 131277857 131277857 1 + G T LIHC 131277854 + 131277834 131277874 41 ATCTATGGTACTTCAGTCCTCACGGGGGATCAAAGTGGAAG ATCTATGGTACTTCAGTCCTCACTGGGGATCAAAGTGGAAG < 41bp 0.776872925686633 0.38885533473707 0.31494176 0.068252206 prediction 0.553745851373267 Functional Loss - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131277854 chr9:131277857 nonsynonymous SNV 0.931 2 24 hm5C_associated_SNPs_58507 0 0 1 0 2 GLE1 chr9:131277808 3'AG 131277808 Downstream 50bp
chr9 131277857 131277857 1 + G T LIHC 131277854 + 131277834 131277874 41 ATCTATGGTACTTCAGTCCTCACGGGGGATCAAAGTGGAAG ATCTATGGTACTTCAGTCCTCACTGGGGATCAAAGTGGAAG < 41bp 0.776872925686633 0.38885533473707 0.31494176 0.068252206 prediction 0.553745851373267 Functional Loss - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131277854 chr9:131277857 nonsynonymous SNV 0.931 2 24 hm5C_associated_SNPs_58507 0 0 1 0 2 GLE1 chr9:131277918 5'GT 131277918 Upstream 62bp
chr17 40766390 40766390 1 + C T UCEC 40766388 + 40766368 40766408 41 CAGACCAACCACTGCTACATCGCCATCCTCAACATCATCCA CAGACCAACCACTGCTACATCGTCATCCTCAACATCATCCA < 41bp 0.776863146490784 0.496654549753698 0.24652669 0.06381869 prediction 0.553726292981569 Functional Loss - TUBG1 ENSG00000131462 CDS Human protein_coding chr17:40766388 chr17:40766390 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_58508 0 0 0 0 1 TUBG1 chr17:40766430 5'GT 40766430 Upstream 41bp
chr17 66036862 66036862 1 + C T SKCM 66036860 + 66036840 66036880 41 GCAGCAATGTGGAAAATCAGCTCCAAGCTACTCAAGCTGCC GCAGCAATGTGGAAAATCAGCTTCAAGCTACTCAAGCTGCC < 41bp 0.787777262763676 0.510918585599565 0.31932113 0.029382229 prediction 0.553717354328223 Functional Loss - KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66036860 chr17:66036862 synonymous SNV . 0 23 hm5C_associated_SNPs_58509 0 0 1 0 2 KPNA2 chr17:66036794 3'AG 66036794 Downstream 69bp
chr17 66036862 66036862 1 + C T SKCM 66036860 + 66036840 66036880 41 GCAGCAATGTGGAAAATCAGCTCCAAGCTACTCAAGCTGCC GCAGCAATGTGGAAAATCAGCTTCAAGCTACTCAAGCTGCC < 41bp 0.787777262763676 0.510918585599565 0.31932113 0.029382229 prediction 0.553717354328223 Functional Loss - KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66036860 chr17:66036862 synonymous SNV . 0 23 hm5C_associated_SNPs_58509 0 0 1 0 2 KPNA2 chr17:66036882 5'GT 66036882 Upstream 21bp
chrX 103432767 103432767 1 + G T UCEC 103432764 + 103432744 103432784 41 TAGCCCTCGCCAACGGCCTGCAAGAGAGGCCTGGAAGAGAA TAGCCCTCGCCAACGGCCTGCAATAGAGGCCTGGAAGAGAA < 41bp 0.776844916582785 0.407573766518052 0.5310349 0.22917253 prediction 0.553689833165571 Functional Loss - FAM199X ENSG00000123575 CDS Human protein_coding chrX:103432764 chrX:103432767 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_58512 0 0 1 0 2 FAM199X chrX:103432721 3'AG 103432721 Downstream 47bp
chrX 103432767 103432767 1 + G T UCEC 103432764 + 103432744 103432784 41 TAGCCCTCGCCAACGGCCTGCAAGAGAGGCCTGGAAGAGAA TAGCCCTCGCCAACGGCCTGCAATAGAGGCCTGGAAGAGAA < 41bp 0.776844916582785 0.407573766518052 0.5310349 0.22917253 prediction 0.553689833165571 Functional Loss - FAM199X ENSG00000123575 CDS Human protein_coding chrX:103432764 chrX:103432767 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_58512 0 0 1 0 2 FAM199X chrX:103432858 5'GT 103432858 Upstream 92bp
chr9 132640669 132640669 1 + G T UCEC 132640667 + 132640647 132640687 41 CCGGGCGTCATCTACTGCATCAGCATGCAGTGGTTCCGGGA CCGGGCGTCATCTACTGCATCATCATGCAGTGGTTCCGGGA < 41bp 0.776836810421928 0.44380110225214 0.1480731 0.08470622 prediction 0.553673620843856 Functional Loss - USP20 ENSG00000136878 CDS Human protein_coding chr9:132640667 chr9:132640669 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_58514 0 0 1 0 2 USP20 chr9:132640617 3'AG 132640617 Downstream 53bp
chr9 132640669 132640669 1 + G T UCEC 132640667 + 132640647 132640687 41 CCGGGCGTCATCTACTGCATCAGCATGCAGTGGTTCCGGGA CCGGGCGTCATCTACTGCATCATCATGCAGTGGTTCCGGGA < 41bp 0.776836810421928 0.44380110225214 0.1480731 0.08470622 prediction 0.553673620843856 Functional Loss - USP20 ENSG00000136878 CDS Human protein_coding chr9:132640667 chr9:132640669 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_58514 0 0 1 0 2 USP20 chr9:132640719 5'GT 132640719 Upstream 51bp
chr16 675940 675940 1 + G T SKCM 675938 + 675918 675958 41 GGATCTTGGTTGGAAACCGGCTGCACCTGGCCTTCAAGCGG GGATCTTGGTTGGAAACCGGCTTCACCTGGCCTTCAAGCGG < 41bp 0.776836068321003 0.446064128435228 0.14611572 0.11106965 prediction 0.553672136642006 Functional Loss - RAB40C ENSG00000197562 CDS Human protein_coding chr16:675938 chr16:675940 synonymous SNV . 0 23 hm5C_associated_SNPs_58516 0 0 1 0 1 RAB40C chr16:675899 3'AG 675899 Downstream 42bp
chr11 47377022 47377022 1 - C A HNSC 47377024 - 47377004 47377044 41 GGCGACATGAAGGACAGCATCTGGTGGGTGGACAAGGACAA GGCGACATGAAGGACAGCATCTTGTGGGTGGACAAGGACAA < 41bp 0.776831684313154 0.457200816712831 0.2453635 0.10944399 prediction 0.553663368626307 Functional Loss - SPI1 ENSG00000066336 CDS Human protein_coding chr11:47377024 chr11:47377022 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_58517 0 0 1 0 1 SPI1 chr11:47377097 3'AG 47377097 Downstream 76bp
chr19 52877655 52877655 1 + G T LUSC 52877652 + 52877632 52877672 41 ATAGCAAACAATCCAGGTGGCAGGGAGTGCATCAAAGGTGT ATAGCAAACAATCCAGGTGGCAGTGAGTGCATCAAAGGTGT < 41bp 0.899505943408639 0.622687742068821 0.81084776 0.19516072 prediction 0.553636402679636 Functional Loss - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52877652 chr19:52877655 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_58519 0 0 1 0 2 ZNF880 chr19:52877680 5'GT 52877680 Upstream 26bp
chr19 52877655 52877655 1 + G T LUSC 52877652 + 52877632 52877672 41 ATAGCAAACAATCCAGGTGGCAGGGAGTGCATCAAAGGTGT ATAGCAAACAATCCAGGTGGCAGTGAGTGCATCAAAGGTGT < 41bp 0.899505943408639 0.622687742068821 0.81084776 0.19516072 prediction 0.553636402679636 Functional Loss - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52877652 chr19:52877655 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_58519 0 0 1 0 2 ZNF880 chr19:52877737 5'GT 52877737 Upstream 83bp
chr2 204255850 204255850 1 + G T ESCA 204255848 + 204255828 204255868 41 GCCCCCTAGTCCCCCTATGTCAGGGAAAGGGACACTTGGGT GCCCCCTAGTCCCCCTATGTCATGGAAAGGGACACTTGGGT < 41bp 0.776791798592553 0.44705219600171 0.9337112 0.3526222 prediction 0.553583597185105 Functional Loss - ABI2 ENSG00000138443 CDS Human protein_coding chr2:204255848 chr2:204255850 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_58522 0 0 1 2 2 ABI2 chr2:204255769 3'AG 204255769 Downstream 82bp
chr2 204255850 204255850 1 + G T ESCA 204255848 + 204255828 204255868 41 GCCCCCTAGTCCCCCTATGTCAGGGAAAGGGACACTTGGGT GCCCCCTAGTCCCCCTATGTCATGGAAAGGGACACTTGGGT < 41bp 0.776791798592553 0.44705219600171 0.9337112 0.3526222 prediction 0.553583597185105 Functional Loss - ABI2 ENSG00000138443 CDS Human protein_coding chr2:204255848 chr2:204255850 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_58522 0 0 1 2 2 ABI2 chr2:204255866 5'GT 204255866 Upstream 17bp
chr14 59819300 59819300 1 + C T COAD 59819298 + 59819278 59819318 41 ACCTATTGGAGGAACATAAACACGAACTGGATCGGATGGCC ACCTATTGGAGGAACATAAACATGAACTGGATCGGATGGCC < 41bp 0.786088792315685 0.509298668563631 0.10242197 0.14982182 prediction 0.553580247504107 Functional Loss - DAAM1 ENSG00000100592 CDS Human protein_coding chr14:59819298 chr14:59819300 synonymous SNV . 0 23 hm5C_associated_SNPs_58523 0 0 0 0 2 DAAM1 chr14:59819244 3'AG 59819244 Downstream 57bp
chr14 59819300 59819300 1 + C T COAD 59819298 + 59819278 59819318 41 ACCTATTGGAGGAACATAAACACGAACTGGATCGGATGGCC ACCTATTGGAGGAACATAAACATGAACTGGATCGGATGGCC < 41bp 0.786088792315685 0.509298668563631 0.10242197 0.14982182 prediction 0.553580247504107 Functional Loss - DAAM1 ENSG00000100592 CDS Human protein_coding chr14:59819298 chr14:59819300 synonymous SNV . 0 23 hm5C_associated_SNPs_58523 0 0 0 0 2 DAAM1 chr14:59819350 5'GT 59819350 Upstream 51bp
chr12 6560479 6560479 1 + G T SARC 6560477 + 6560457 6560497 41 CCTGCAGAGCCTTGTCATTACAGCTGCCCCAGGGAGGAGGA CCTGCAGAGCCTTGTCATTACATCTGCCCCAGGGAGGAGGA < 41bp 0.776783920334842 0.438817561210667 0.39054206 0.35390902 prediction 0.553567840669685 Functional Loss - CD27 ENSG00000139193 CDS Human protein_coding chr12:6560477 chr12:6560479 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_58525 0 0 0 0 1 CD27 chr12:6560434 3'AG 6560434 Downstream 46bp
chr2 121736077 121736077 1 + G T LUSC 121736074 + 121736054 121736094 41 GTGCCGCTGGCAGGCCTGCACGCGGGAGCAGAAGCCCTTCA GTGCCGCTGGCAGGCCTGCACGCTGGAGCAGAAGCCCTTCA < 41bp 0.88979492731835 0.613012063857939 0.835392 0.14693856 prediction 0.553565726920822 Functional Loss - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121736074 chr2:121736077 nonsynonymous SNV 0.988 5 24 hm5C_associated_SNPs_58526 0 0 0 0 2 GLI2 chr2:121736010 3'AG 121736010 Downstream 68bp
chr2 121736077 121736077 1 + G T LUSC 121736074 + 121736054 121736094 41 GTGCCGCTGGCAGGCCTGCACGCGGGAGCAGAAGCCCTTCA GTGCCGCTGGCAGGCCTGCACGCTGGAGCAGAAGCCCTTCA < 41bp 0.88979492731835 0.613012063857939 0.835392 0.14693856 prediction 0.553565726920822 Functional Loss - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121736074 chr2:121736077 nonsynonymous SNV 0.988 5 24 hm5C_associated_SNPs_58526 0 0 0 0 2 GLI2 chr2:121736159 5'GT 121736159 Upstream 83bp
chr8 75263638 75263638 1 + G T UCEC 75263635 + 75263615 75263655 41 GAGAAGTGCCTGTCCTTATCCACGGGGAAAACATAATTTGT GAGAAGTGCCTGTCCTTATCCACTGGGAAAACATAATTTGT < 41bp 0.776780446041231 0.402695545632067 0.68092155 0.1667124 prediction 0.553560892082462 Functional Loss - GDAP1 ENSG00000104381 CDS Human protein_coding chr8:75263635 chr8:75263638 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_58528 0 0 0 0 1 GDAP1 chr8:75263701 5'GT 75263701 Upstream 64bp
chr16 3573224 3573224 1 + G T UCEC 3573222 + 3573202 3573242 41 AAAAGCAGTATGACACTTATCTGGAGAAATTTCAAAATCTG AAAAGCAGTATGACACTTATCTTGAGAAATTTCAAAATCTG < 41bp 0.776773239348977 0.463365006126194 0.32397243 0.10897717 prediction 0.553546478697954 Functional Loss - CLUAP1 ENSG00000103351 CDS Human protein_coding chr16:3573222 chr16:3573224 synonymous SNV . 0 23 hm5C_associated_SNPs_58529 0 0 1 0 2 CLUAP1 chr16:3573158 3'AG 3573158 Downstream 67bp
chr16 3573224 3573224 1 + G T UCEC 3573222 + 3573202 3573242 41 AAAAGCAGTATGACACTTATCTGGAGAAATTTCAAAATCTG AAAAGCAGTATGACACTTATCTTGAGAAATTTCAAAATCTG < 41bp 0.776773239348977 0.463365006126194 0.32397243 0.10897717 prediction 0.553546478697954 Functional Loss - CLUAP1 ENSG00000103351 CDS Human protein_coding chr16:3573222 chr16:3573224 synonymous SNV . 0 23 hm5C_associated_SNPs_58529 0 0 1 0 2 CLUAP1 chr16:3573299 5'GT 3573299 Upstream 76bp
chr19 45543500 45543500 1 + G T CESC 45543498 + 45543478 45543518 41 ACGAGGCTCGGAAGCATGAGCGGAAGCTTCGAGGCATGATG ACGAGGCTCGGAAGCATGAGCGTAAGCTTCGAGGCATGATG < 41bp 0.77676869929567 0.439191649150563 0.82140934 0.2852468 prediction 0.553537398591341 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45543498 chr19:45543500 synonymous SNV . 0 23 hm5C_associated_SNPs_58531 0 0 1 0 1 CLASRP chr19:45543569 5'GT 45543569 Upstream 70bp
chr1 84544018 84544018 1 + G C LUSC 84544017 + 84543997 84544037 41 ATCGCCCCAGACATGGGGAACGCGGCGACCGCCAAGAAAGG ATCGCCCCAGACATGGGGAACCCGGCGACCGCCAAGAAAGG < 41bp 0.776768632464972 0.495705653818286 0.3302229 0.29358432 prediction 0.553537264929944 Functional Loss - PRKACB ENSG00000142875 CDS Human protein_coding chr1:84544017 chr1:84544018 nonsynonymous SNV 0.977 1 22 hm5C_associated_SNPs_58532 0 0 0 0 1 PRKACB chr1:84544054 5'GT 84544054 Upstream 37bp
chr10 118310654 118310654 1 + G T COAD 118310651 + 118310631 118310671 41 GTGAACTGTATCTGTGTGGACTGGAAAGGTGGCTCCCGAAC GTGAACTGTATCTGTGTGGACTGTAAAGGTGGCTCCCGAAC < 41bp 0.898847977118053 0.622095212304388 0.2597974 0.0866158 prediction 0.553505529627331 Functional Loss - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118310651 chr10:118310654 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_58536 0 0 0 0 2 PNLIP chr10:118310610 3'AG 118310610 Downstream 45bp
chr10 118310654 118310654 1 + G T COAD 118310651 + 118310631 118310671 41 GTGAACTGTATCTGTGTGGACTGGAAAGGTGGCTCCCGAAC GTGAACTGTATCTGTGTGGACTGTAAAGGTGGCTCCCGAAC < 41bp 0.898847977118053 0.622095212304388 0.2597974 0.0866158 prediction 0.553505529627331 Functional Loss - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118310651 chr10:118310654 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_58536 0 0 0 0 2 PNLIP chr10:118310744 5'GT 118310744 Upstream 91bp
chr18 31322919 31322919 1 + G T LUAD 31322916 + 31322896 31322936 41 ACCAGTCTCCAAACCTGAGTCTCGAGCATCCACTAGCACAT ACCAGTCTCCAAACCTGAGTCTCTAGCATCCACTAGCACAT < 41bp 0.776749967677166 0.40889529000567 0.1498844 0.65395224 prediction 0.553499935354333 Functional Loss - ASXL3 ENSG00000141431 CDS Human protein_coding chr18:31322916 chr18:31322919 nonsynonymous SNV 0.217 2 24 hm5C_associated_SNPs_58537 0 0 0 0 1 ASXL3 chr18:31322852 3'AG 31322852 Downstream 68bp
chr8 86356352 86356352 1 + G T LUSC 86356350 + 86356330 86356370 41 TCGCTGTGATTGGCATTTTTCTGAAGGTAAAGTAAAAATTG TCGCTGTGATTGGCATTTTTCTTAAGGTAAAGTAAAAATTG < 41bp 0.776749571585006 0.465660779658365 0.30094418 0.086458 prediction 0.553499143170011 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86356350 chr8:86356352 synonymous SNV . 0 23 hm5C_associated_SNPs_58538 0 0 0 0 2 CA3 chr8:86356263 3'AG 86356263 Downstream 90bp
chr8 86356352 86356352 1 + G T LUSC 86356350 + 86356330 86356370 41 TCGCTGTGATTGGCATTTTTCTGAAGGTAAAGTAAAAATTG TCGCTGTGATTGGCATTTTTCTTAAGGTAAAGTAAAAATTG < 41bp 0.776749571585006 0.465660779658365 0.30094418 0.086458 prediction 0.553499143170011 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86356350 chr8:86356352 synonymous SNV . 0 23 hm5C_associated_SNPs_58538 0 0 0 0 2 CA3 chr8:86356355 5'GT 86356355 Upstream 4bp
chr19 2991962 2991962 1 + G T BLCA 2991959 + 2991939 2991979 41 AGAGGACCATCATGAAACCTCTGGAGTACCAATTCAAGTCT AGAGGACCATCATGAAACCTCTGTAGTACCAATTCAAGTCT < 41bp 0.902997039986941 0.626250365007804 0.26441985 0.19735384 prediction 0.553493349958273 Functional Loss - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2991959 chr19:2991962 stopgain 0.006 0 24 hm5C_associated_SNPs_58539 0 0 0 0 1 TLE6 chr19:2991982 5'GT 2991982 Upstream 21bp
chr22 42262934 42262934 1 + G T UCEC 42262932 + 42262912 42262952 41 GGCAGTGGTGGTAGTGGTAGCAGCAGCGGCAGCAGTGGCAG GGCAGTGGTGGTAGTGGTAGCATCAGCGGCAGCAGTGGCAG < 41bp 0.867433844338938 0.590697708837467 0.8730168 0.7229438 prediction 0.553472271002943 Functional Loss - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42262932 chr22:42262934 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_58542 0 0 1 0 1 SREBF2 chr22:42262835 3'AG 42262835 Downstream 100bp
chr16 23691520 23691520 1 + G C BLCA 23691519 + 23691499 23691539 41 ACCGAAACCGAGTTATTCATCGAGACCTCAAGCTGGGCAAC ACCGAAACCGAGTTATTCATCCAGACCTCAAGCTGGGCAAC < 41bp 0.830774540139154 0.554044163870627 0.8260057 0.2367478 prediction 0.553460752537055 Functional Loss - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23691519 chr16:23691520 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_58543 0 0 1 0 1 PLK1 chr16:23691573 5'GT 23691573 Upstream 54bp
chr11 117975456 117975456 1 + G T STAD 117975454 + 117975434 117975474 41 GCAGGTGCTGGACTCGGCCACAGGGAACTGGTTCTCTGCCT GCAGGTGCTGGACTCGGCCACATGGAACTGGTTCTCTGCCT < 41bp 0.874434497975556 0.597716302119135 0.91893184 0.26839602 prediction 0.553436391712841 Functional Loss - TMPRSS4 ENSG00000137648 CDS Human protein_coding chr11:117975454 chr11:117975456 nonsynonymous SNV 0.652 1 23 hm5C_associated_SNPs_58547 0 0 0 0 2 TMPRSS4 chr11:117975406 3'AG 117975406 Downstream 51bp
chr11 117975456 117975456 1 + G T STAD 117975454 + 117975434 117975474 41 GCAGGTGCTGGACTCGGCCACAGGGAACTGGTTCTCTGCCT GCAGGTGCTGGACTCGGCCACATGGAACTGGTTCTCTGCCT < 41bp 0.874434497975556 0.597716302119135 0.91893184 0.26839602 prediction 0.553436391712841 Functional Loss - TMPRSS4 ENSG00000137648 CDS Human protein_coding chr11:117975454 chr11:117975456 nonsynonymous SNV 0.652 1 23 hm5C_associated_SNPs_58547 0 0 0 0 2 TMPRSS4 chr11:117975535 5'GT 117975535 Upstream 80bp
chr4 71099825 71099825 1 + G T UCEC 71099822 + 71099802 71099842 41 ACTTCCACCAATTCCATTTCCAAGATTTCCATGGTTTAGAC ACTTCCACCAATTCCATTTCCAATATTTCCATGGTTTAGAC < 41bp 0.878515131603923 0.601798783866926 0.11856982 0.06647509 prediction 0.553432695473995 Functional Loss - FDCSP ENSG00000181617 CDS Human protein_coding chr4:71099822 chr4:71099825 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_58548 0 0 0 0 1 FDCSP chr4:71099737 3'AG 71099737 Downstream 89bp
chr2 46803290 46803290 1 + C T UCEC 46803288 + 46803268 46803308 41 GATGTCTTCCTTATATGCTTCTCGGTGGTAAATCCAGCCTC GATGTCTTCCTTATATGCTTCTTGGTGGTAAATCCAGCCTC < 41bp 0.781227858802201 0.504513562463899 0.43542373 0.3953636 prediction 0.553428592676604 Functional Loss - RHOQ ENSG00000119729 CDS Human protein_coding chr2:46803288 chr2:46803290 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_58549 0 0 1 0 1 RHOQ chr2:46803226 3'AG 46803226 Downstream 65bp
chr8 48874738 48874738 1 + G T rs569961103 48874736 + 48874716 48874756 41 ACAGAGGCCTGACCTGGGCTCTGCACAGAAGGGCCTGCAAG ACAGAGGCCTGACCTGGGCTCTTCACAGAAGGGCCTGCAAG < 41bp 0.776712526510401 0.444054370914249 0.10570389 0.3256964 prediction 0.553425053020803 Functional Loss - MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874736 chr8:48874738 nonsynonymous SNV 0.772 1 23 hm5C_associated_SNPs_58550 0 0 1 0 3 MCM4 chr8:48874676 3'AG 48874676 Downstream 63bp
chr8 48874738 48874738 1 + G T rs569961103 48874736 + 48874716 48874756 41 ACAGAGGCCTGACCTGGGCTCTGCACAGAAGGGCCTGCAAG ACAGAGGCCTGACCTGGGCTCTTCACAGAAGGGCCTGCAAG < 41bp 0.776712526510401 0.444054370914249 0.10570389 0.3256964 prediction 0.553425053020803 Functional Loss - MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874736 chr8:48874738 nonsynonymous SNV 0.772 1 23 hm5C_associated_SNPs_58550 0 0 1 0 3 MCM4 chr8:48874722 3'AG 48874722 Downstream 17bp
chr8 48874738 48874738 1 + G T rs569961103 48874736 + 48874716 48874756 41 ACAGAGGCCTGACCTGGGCTCTGCACAGAAGGGCCTGCAAG ACAGAGGCCTGACCTGGGCTCTTCACAGAAGGGCCTGCAAG < 41bp 0.776712526510401 0.444054370914249 0.10570389 0.3256964 prediction 0.553425053020803 Functional Loss - MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874736 chr8:48874738 nonsynonymous SNV 0.772 1 23 hm5C_associated_SNPs_58550 0 0 1 0 3 MCM4 chr8:48874776 5'GT 48874776 Upstream 39bp
chr5 176306485 176306485 1 + G T LUSC 176306482 + 176306462 176306502 41 CTCTGGCCCAGAAACTCCACCTGGACAGGTGGGCGGGAGAG CTCTGGCCCAGAAACTCCACCTGTACAGGTGGGCGGGAGAG < 41bp 0.776700546016184 0.398604936114327 0.29567468 0.17139888 prediction 0.553401092032368 Functional Loss - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176306482 chr5:176306485 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_58552 0 0 0 0 1 UNC5A chr5:176306489 5'GT 176306489 Upstream 5bp
chr12 117178869 117178869 1 + G T COAD 117178867 + 117178847 117178887 41 AGGAAGATGCAGAGACGCCACAGCAGCAACACGGATAACAT AGGAAGATGCAGAGACGCCACATCAGCAACACGGATAACAT < 41bp 0.776672336936432 0.440169457466065 0.14489463 0.070522755 prediction 0.553344673872864 Functional Loss - RNFT2 ENSG00000135119 CDS Human protein_coding chr12:117178867 chr12:117178869 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_58557 0 0 0 0 2 RNFT2 chr12:117178841 3'AG 117178841 Downstream 29bp
chr12 117178869 117178869 1 + G T COAD 117178867 + 117178847 117178887 41 AGGAAGATGCAGAGACGCCACAGCAGCAACACGGATAACAT AGGAAGATGCAGAGACGCCACATCAGCAACACGGATAACAT < 41bp 0.776672336936432 0.440169457466065 0.14489463 0.070522755 prediction 0.553344673872864 Functional Loss - RNFT2 ENSG00000135119 CDS Human protein_coding chr12:117178867 chr12:117178869 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_58557 0 0 0 0 2 RNFT2 chr12:117178899 5'GT 117178899 Upstream 31bp
chr15 85681082 85681082 1 + G T LIHC 85681080 + 85681060 85681100 41 CTTGACAACAACTTTAAATACTGGAAAGGACTGGACGAAAT CTTGACAACAACTTTAAATACTTGAAAGGACTGGACGAAAT < 41bp 0.787138540887806 0.510482113755257 0.36863008 0.32218403 prediction 0.553312854265097 Functional Loss - PDE8A ENSG00000073417 CDS Human protein_coding chr15:85681080 chr15:85681082 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_58561 0 0 1 0 1 PDE8A chr15:85681028 3'AG 85681028 Downstream 55bp
chr11 10327535 10327535 1 + G T LUAD 10327533 + 10327513 10327553 41 TGAGTCGTGGGAAGAGGGAACTGCGGATGTCCAGCAGCTAC TGAGTCGTGGGAAGAGGGAACTTCGGATGTCCAGCAGCTAC < 41bp 0.776631546048718 0.437621517852668 0.8079833 0.78178716 prediction 0.553263092097436 Functional Loss - ADM ENSG00000148926 CDS Human protein_coding chr11:10327533 chr11:10327535 synonymous SNV . 0 23 hm5C_associated_SNPs_58563 0 0 1 0 1 ADM chr11:10327496 3'AG 10327496 Downstream 40bp
chr11 12245040 12245040 1 + C T SKCM 12245038 + 12245018 12245058 41 GTGAGGAGATCTGTCAACCTCTCCAGGAAGGGTAAGCGGCC GTGAGGAGATCTGTCAACCTCTTCAGGAAGGGTAAGCGGCC < 41bp 0.776620238138408 0.495383385532376 0.94750965 0.084721744 prediction 0.553240476276815 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12245038 chr11:12245040 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_58564 0 0 1 0 1 MICAL2 chr11:12244958 3'AG 12244958 Downstream 83bp
chr16 29086413 29086413 1 + A C DLBC 29086409 + 29086389 29086429 41 AGATGCGGCCGCTTCGCCCTCTGCAGTCAAGATGCTGGGCG AGATGCGGCCGCTTCGCCCTCTGCCGTCAAGATGCTGGGCG < 41bp 0.893786129368136 0.617168481430122 0.54009277 0.60849106 prediction 0.553235295876028 Functional Loss - RRN3P2 ENSG00000103472 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:29086409 chr16:29086413 . . 0 25 hm5C_associated_SNPs_58565 0 0 0 0 1 RRN3P2 chr16:29086442 5'GT 29086442 Upstream 30bp
chr19 1220400 1220400 1 + G T LUAD 1220397 + 1220377 1220417 41 TCTGTCAGCTGATTGACGGCCTGGAGTACCTGCATAGCCAG TCTGTCAGCTGATTGACGGCCTGTAGTACCTGCATAGCCAG < 41bp 0.900478806162789 0.62387637430033 0.7721895 0.34959742 prediction 0.553204863724916 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1220397 chr19:1220400 stopgain 0.996 1 24 hm5C_associated_SNPs_58568 0 0 1 0 1 STK11 chr19:1220372 3'AG 1220372 Downstream 29bp
chr6 133138645 133138645 1 + G T LAML 133138642 + 133138622 133138662 41 TATGGCAAGGAGTCTCAGGCCAAGGATGTCATTGAAGAGTA TATGGCAAGGAGTCTCAGGCCAATGATGTCATTGAAGAGTA < 41bp 0.776592736791077 0.408993129029254 0.21998838 0.14650014 prediction 0.553185473582154 Functional Loss - RPS12 ENSG00000112306 CDS Human protein_coding chr6:133138642 chr6:133138645 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_58570 0 0 1 0 1 RPS12 chr6:133138619 3'AG 133138619 Downstream 27bp
chr6 31556310 31556310 1 + G T COAD 31556308 + 31556288 31556328 41 GTCCCAGGCCCAGGGCTCCTCAGAGCAGGAACTCCACTATG GTCCCAGGCCCAGGGCTCCTCATAGCAGGAACTCCACTATG < 41bp 0.776584774126863 0.487276806351316 0.9045615 0.38831687 prediction 0.553169548253726 Functional Loss - LST1 ENSG00000204482 CDS Human protein_coding chr6:31556308 chr6:31556310 stopgain 0.911 1 23 hm5C_associated_SNPs_58571 0 0 0 1 2 LST1 chr6:31556274 3'AG 31556274 Downstream 37bp
chr6 31556310 31556310 1 + G T COAD 31556308 + 31556288 31556328 41 GTCCCAGGCCCAGGGCTCCTCAGAGCAGGAACTCCACTATG GTCCCAGGCCCAGGGCTCCTCATAGCAGGAACTCCACTATG < 41bp 0.776584774126863 0.487276806351316 0.9045615 0.38831687 prediction 0.553169548253726 Functional Loss - LST1 ENSG00000204482 CDS Human protein_coding chr6:31556308 chr6:31556310 stopgain 0.911 1 23 hm5C_associated_SNPs_58571 0 0 0 1 2 LST1 chr6:31556295 3'AG 31556295 Downstream 16bp
chr2 127451461 127451461 1 + G T STAD 127451458 + 127451438 127451478 41 AGAGCCTGATCCAGGGATGTCTGGATGGCCGGATGGCAGAA AGAGCCTGATCCAGGGATGTCTGTATGGCCGGATGGCAGAA < 41bp 0.898158652570122 0.621582125162452 0.5478065 0.2548197 prediction 0.55315305481534 Functional Loss - GYPC ENSG00000136732 CDS Human protein_coding chr2:127451458 chr2:127451461 nonsynonymous SNV 0.003 2 24 hm5C_associated_SNPs_58573 0 0 1 0 2 GYPC chr2:127451440 3'AG 127451440 Downstream 22bp
chr2 127451461 127451461 1 + G T STAD 127451458 + 127451438 127451478 41 AGAGCCTGATCCAGGGATGTCTGGATGGCCGGATGGCAGAA AGAGCCTGATCCAGGGATGTCTGTATGGCCGGATGGCAGAA < 41bp 0.898158652570122 0.621582125162452 0.5478065 0.2548197 prediction 0.55315305481534 Functional Loss - GYPC ENSG00000136732 CDS Human protein_coding chr2:127451458 chr2:127451461 nonsynonymous SNV 0.003 2 24 hm5C_associated_SNPs_58573 0 0 1 0 2 GYPC chr2:127451523 5'GT 127451523 Upstream 63bp
chr16 81348827 81348827 1 + G C CESC 81348826 + 81348806 81348846 41 TGCGACGCGCACCTGGTCCTCGACGGGGAGGAGATCCCGGT TGCGACGCGCACCTGGTCCTCCACGGGGAGGAGATCCCGGT < 41bp 0.8200864320173 0.54352024227048 0.84416986 0.847889 prediction 0.55313237949364 Functional Loss - GAN ENSG00000261609 CDS Human protein_coding chr16:81348826 chr16:81348827 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_58574 0 0 1 0 1 GAN chr16:81348885 5'GT 81348885 Upstream 59bp
chr2 103380807 103380807 1 + G T UCEC 103380804 + 103380784 103380824 41 CTAGCCAATCAGCCACCGTCCAAGAACTGCACACATGCTTA CTAGCCAATCAGCCACCGTCCAATAACTGCACACATGCTTA < 41bp 0.77653598305712 0.391791363505962 0.32911772 0.16377574 prediction 0.55307196611424 Functional Loss - TMEM182 ENSG00000170417 CDS Human protein_coding chr2:103380804 chr2:103380807 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_58575 0 0 1 0 2 TMEM182 chr2:103380788 3'AG 103380788 Downstream 20bp
chr2 103380807 103380807 1 + G T UCEC 103380804 + 103380784 103380824 41 CTAGCCAATCAGCCACCGTCCAAGAACTGCACACATGCTTA CTAGCCAATCAGCCACCGTCCAATAACTGCACACATGCTTA < 41bp 0.77653598305712 0.391791363505962 0.32911772 0.16377574 prediction 0.55307196611424 Functional Loss - TMEM182 ENSG00000170417 CDS Human protein_coding chr2:103380804 chr2:103380807 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_58575 0 0 1 0 2 TMEM182 chr2:103380886 5'GT 103380886 Upstream 80bp
chr1 210012319 210012319 1 + C T rs114160793 210012317 + 210012297 210012337 41 TGCAGCTCTTCATCAGCCTCCTCGAGGGTGACAGCAAGAAG TGCAGCTCTTCATCAGCCTCCTTGAGGGTGACAGCAAGAAG < 41bp 0.785982018104259 0.509448883748325 0.10979831 0.10077241 prediction 0.553066268711868 Functional Loss - DIEXF ENSG00000117597 CDS Human protein_coding chr1:210012317 chr1:210012319 synonymous SNV . 0 23 hm5C_associated_SNPs_58576 0 0 1 0 1 DIEXF chr1:210012254 3'AG 210012254 Downstream 66bp
chr20 61869820 61869820 1 + G T ACC 61869818 + 61869798 61869838 41 AGGAGACTCACTCCCAGCTGCTGGGCTCCTGGGTGAGCGCC AGGAGACTCACTCCCAGCTGCTTGGCTCCTGGGTGAGCGCC < 41bp 0.776509711149277 0.43097831146058 0.2812259 0.10337728 prediction 0.553019422298555 Functional Loss - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61869818 chr20:61869820 synonymous SNV . 0 23 hm5C_associated_SNPs_58578 0 0 0 0 2 BIRC7 chr20:61869748 3'AG 61869748 Downstream 73bp
chr20 61869820 61869820 1 + G T ACC 61869818 + 61869798 61869838 41 AGGAGACTCACTCCCAGCTGCTGGGCTCCTGGGTGAGCGCC AGGAGACTCACTCCCAGCTGCTTGGCTCCTGGGTGAGCGCC < 41bp 0.776509711149277 0.43097831146058 0.2812259 0.10337728 prediction 0.553019422298555 Functional Loss - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61869818 chr20:61869820 synonymous SNV . 0 23 hm5C_associated_SNPs_58578 0 0 0 0 2 BIRC7 chr20:61869829 5'GT 61869829 Upstream 10bp
chr1 76272741 76272741 1 + G T UCEC 76272738 + 76272718 76272758 41 TGTAGAAGGGAGAGGACTTGCCAGAGGTGAAATAGGAATGG TGTAGAAGGGAGAGGACTTGCCATAGGTGAAATAGGAATGG < 41bp 0.776506634566415 0.41225940823931 0.79190934 0.5283854 prediction 0.553013269132829 Functional Loss - MSH4 ENSG00000057468 CDS Human protein_coding chr1:76272738 chr1:76272741 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_58579 0 0 0 0 2 MSH4 chr1:76272666 3'AG 76272666 Downstream 76bp
chr1 76272741 76272741 1 + G T UCEC 76272738 + 76272718 76272758 41 TGTAGAAGGGAGAGGACTTGCCAGAGGTGAAATAGGAATGG TGTAGAAGGGAGAGGACTTGCCATAGGTGAAATAGGAATGG < 41bp 0.776506634566415 0.41225940823931 0.79190934 0.5283854 prediction 0.553013269132829 Functional Loss - MSH4 ENSG00000057468 CDS Human protein_coding chr1:76272738 chr1:76272741 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_58579 0 0 0 0 2 MSH4 chr1:76272826 5'GT 76272826 Upstream 86bp
chr2 176983704 176983704 1 + A C rs61740491 176983700 + 176983680 176983720 41 AGAGGAAATCAAGTCTGATACACCAACCAGCAATTGGCTCA AGAGGAAATCAAGTCTGATACACCCACCAGCAATTGGCTCA < 41bp 0.776505931187205 0.375233639677474 0.033984333 0.017760694 prediction 0.55301186237441 Functional Loss - HOXD10 ENSG00000128710 CDS Human protein_coding chr2:176983700 chr2:176983704 synonymous SNV . 0 25 hm5C_associated_SNPs_58580 0 0 1 0 1 HOXD10 chr2:176983682 3'AG 176983682 Downstream 23bp
chr21 35304004 35304004 1 + A T rs560388366 35304000 + 35303980 35304020 41 TGGGAAATGGTTATTGTCAACGCCAGCCCCATTTTGGAGGC TGGGAAATGGTTATTGTCAACGCCTGCCCCATTTTGGAGGC < 41bp 0.782122929112553 0.505619008431329 0.3923377 0.18921083 prediction 0.553007841362448 Functional Loss - LINC00649 ENSG00000237945 ncRNA_exonic Human antisense chr21:35304000 chr21:35304004 . . 0 25 hm5C_associated_SNPs_58581 0 0 1 0 1 LINC00649 chr21:35304046 5'GT 35304046 Upstream 43bp
chr18 3277822 3277822 1 + G T KIRC 3277820 + 3277800 3277840 41 AACCATGGGGGATCGGTTTACAGATGAGGAAGTGGATGAGC AACCATGGGGGATCGGTTTACATATGAGGAAGTGGATGAGC < 41bp 0.776501491154389 0.456191970208687 0.8274058 0.32708755 prediction 0.553002982308779 Functional Loss - MYL12B ENSG00000118680 CDS Human protein_coding chr18:3277820 chr18:3277822 nonsynonymous SNV 0.815 3 23 hm5C_associated_SNPs_58582 0 0 1 0 1 MYL12B chr18:3277763 3'AG 3277763 Downstream 60bp
chr19 39963967 39963967 1 + G T LUSC 39963964 + 39963944 39963984 41 ACGGCTCACAGACACCCCTCCAGGATGGTGAGTGCCCGCAG ACGGCTCACAGACACCCCTCCAGTATGGTGAGTGCCCGCAG < 41bp 0.895065826367699 0.6185720913481 0.45173147 0.052779198 prediction 0.5529874700392 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39963964 chr19:39963967 nonsynonymous SNV 0.977 3 24 hm5C_associated_SNPs_58584 0 0 1 0 1 SUPT5H chr19:39963970 5'GT 39963970 Upstream 4bp
chr1 182852725 182852725 1 + C T LGG 182852723 + 182852703 182852743 41 CTGCAGTTGCTTCTCTTTGCCTCCAAGAAAGTCCAATCTGA CTGCAGTTGCTTCTCTTTGCCTTCAAGAAAGTCCAATCTGA < 41bp 0.776479513088542 0.476965642990091 0.96040523 0.0947386 prediction 0.552959026177084 Functional Loss - DHX9 ENSG00000135829 CDS Human protein_coding chr1:182852723 chr1:182852725 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_58585 0 0 1 0 2 DHX9 chr1:182852655 3'AG 182852655 Downstream 71bp
chr1 182852725 182852725 1 + C T LGG 182852723 + 182852703 182852743 41 CTGCAGTTGCTTCTCTTTGCCTCCAAGAAAGTCCAATCTGA CTGCAGTTGCTTCTCTTTGCCTTCAAGAAAGTCCAATCTGA < 41bp 0.776479513088542 0.476965642990091 0.96040523 0.0947386 prediction 0.552959026177084 Functional Loss - DHX9 ENSG00000135829 CDS Human protein_coding chr1:182852723 chr1:182852725 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_58585 0 0 1 0 2 DHX9 chr1:182852770 5'GT 182852770 Upstream 46bp
chr12 130855826 130855826 1 + G T CESC 130855824 + 130855804 130855844 41 GCCTGAAGCCAGACCACATACAGCGCTTGACCTACAAGCTG GCCTGAAGCCAGACCACATACATCGCTTGACCTACAAGCTG < 41bp 0.776467377527611 0.444470756272525 0.21665028 0.021039873 prediction 0.552934755055222 Functional Loss - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130855824 chr12:130855826 nonsynonymous SNV 0.989 4 23 hm5C_associated_SNPs_58586 0 0 0 0 1 PIWIL1 chr12:130855868 5'GT 130855868 Upstream 43bp
chr9 131644456 131644456 1 + G C rs530650111 131644455 + 131644435 131644475 41 AAAAGGAGGCGCCGGAGCAGCGCTGCGGCCGGCGGCGGGAC AAAAGGAGGCGCCGGAGCAGCCCTGCGGCCGGCGGCGGGAC < 41bp 0.776450689859465 0.486133273700766 0.410566 0.25702637 prediction 0.552901379718931 Functional Loss - LRRC8A ENSG00000136802 UTR5 Human protein_coding chr9:131644455 chr9:131644456 . . 0 22 hm5C_associated_SNPs_58587 0 0 1 0 1 LRRC8A chr9:131644529 5'GT 131644529 Upstream 74bp
chr22 29706908 29706908 1 + G C LUSC 29706904 + 29706884 29706924 41 CCGCCCTGCTAGCCCAGTCCCTGGGAGTGAGCGCCGGGGCT CCGCCCTGCTAGCCCAGTCCCTGGCAGTGAGCGCCGGGGCT < 41bp 0.776444591780092 0.496098977874463 0.699282 0.28874087 prediction 0.552889183560184 Functional Loss - GAS2L1 ENSG00000185340 CDS Human protein_coding chr22:29706904 chr22:29706908 synonymous SNV . 0 25 hm5C_associated_SNPs_58589 0 0 0 0 2 GAS2L1 chr22:29706817 3'AG 29706817 Downstream 92bp
chr22 29706908 29706908 1 + G C LUSC 29706904 + 29706884 29706924 41 CCGCCCTGCTAGCCCAGTCCCTGGGAGTGAGCGCCGGGGCT CCGCCCTGCTAGCCCAGTCCCTGGCAGTGAGCGCCGGGGCT < 41bp 0.776444591780092 0.496098977874463 0.699282 0.28874087 prediction 0.552889183560184 Functional Loss - GAS2L1 ENSG00000185340 CDS Human protein_coding chr22:29706904 chr22:29706908 synonymous SNV . 0 25 hm5C_associated_SNPs_58589 0 0 0 0 2 GAS2L1 chr22:29706988 5'GT 29706988 Upstream 81bp
chr6 18200695 18200695 1 + G T GBM 18200693 + 18200673 18200713 41 ACTGTCCTGGAAGCCAAAGACAGAATTGGAGGCCGAGTCTG ACTGTCCTGGAAGCCAAAGACATAATTGGAGGCCGAGTCTG < 41bp 0.860088531316021 0.583644186950819 0.42522827 0.16463077 prediction 0.552888688730406 Functional Loss - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18200693 chr6:18200695 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_58590 0 0 1 0 1 KDM1B chr6:18200670 3'AG 18200670 Downstream 26bp
chr2 113082627 113082627 1 + A T HNSC 113082623 + 113082603 113082643 41 CATGGGAGTGGGTCTGATGGCAGCAGCACTAGGACAGGCCA CATGGGAGTGGGTCTGATGGCAGCTGCACTAGGACAGGCCA < 41bp 0.810108989825866 0.533673375830995 0.5945355 0.7353723 prediction 0.552871227989743 Functional Loss - ZC3H6 ENSG00000188177 CDS Human protein_coding chr2:113082623 chr2:113082627 nonsynonymous SNV 0.115 1 25 hm5C_associated_SNPs_58594 0 0 0 0 1 ZC3H6 chr2:113082541 3'AG 113082541 Downstream 87bp
chr9 43861068 43861068 1 + A C rs370614516 43861064 + 43861044 43861084 41 GCGGTGACCCTCCGAGGTGCCCCCAGCGGGCACCCGCTCTC GCGGTGACCCTCCGAGGTGCCCCCCGCGGGCACCCGCTCTC < 41bp 0.77643386475838 0.370384567594398 0.07533881 0.018324405 prediction 0.55286772951676 Functional Loss - CNTNAP3B ENSG00000154529 CDS Human protein_coding chr9:43861064 chr9:43861068 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_58595 0 0 0 0 2 CNTNAP3B chr9:43861003 3'AG 43861003 Downstream 66bp
chr9 43861068 43861068 1 + A C rs370614516 43861064 + 43861044 43861084 41 GCGGTGACCCTCCGAGGTGCCCCCAGCGGGCACCCGCTCTC GCGGTGACCCTCCGAGGTGCCCCCCGCGGGCACCCGCTCTC < 41bp 0.77643386475838 0.370384567594398 0.07533881 0.018324405 prediction 0.55286772951676 Functional Loss - CNTNAP3B ENSG00000154529 CDS Human protein_coding chr9:43861064 chr9:43861068 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_58595 0 0 0 0 2 CNTNAP3B chr9:43861006 3'AG 43861006 Downstream 63bp
chr11 6261363 6261363 1 + G T LUAD 6261360 + 6261340 6261380 41 TCGAGTCGCTACGTTCGCACCTGGAGTTTCTTCTTGGACCT TCGAGTCGCTACGTTCGCACCTGTAGTTTCTTCTTGGACCT < 41bp 0.905552399741855 0.62911981122711 0.55814797 0.2239683 prediction 0.552865177029489 Functional Loss - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6261360 chr11:6261363 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_58596 0 0 0 0 1 CNGA4 chr11:6261296 3'AG 6261296 Downstream 68bp
chr11 62554931 62554931 1 + G C BLCA 62554930 + 62554910 62554950 41 CTGTCCTGGCTGCAGCGCGTCGAGCTTGCGCTCTTTGCTGC CTGTCCTGGCTGCAGCGCGTCCAGCTTGCGCTCTTTGCTGC < 41bp 0.815592238963943 0.539161178720587 0.74213225 0.13855645 prediction 0.552862120486712 Functional Loss - TMEM179B ENSG00000185475 CDS Human protein_coding chr11:62554930 chr11:62554931 nonsynonymous SNV 0.687 2 22 hm5C_associated_SNPs_58597 0 0 1 0 1 TMEM179B chr11:62554999 5'GT 62554999 Upstream 69bp
chr2 178981053 178981053 1 + G T UCEC 178981050 + 178981030 178981070 41 TGTTGAAGATGAAGAACTTACAAGAATCTTTGTTATGATAC TGTTGAAGATGAAGAACTTACAATAATCTTTGTTATGATAC < 41bp 0.889995847229612 0.61359229091091 0.24543819 0.05709642 prediction 0.552807112637404 Functional Loss - RBM45 ENSG00000155636 CDS Human protein_coding chr2:178981050 chr2:178981053 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_58600 0 0 1 0 2 RBM45 chr2:178980989 3'AG 178980989 Downstream 65bp
chr2 178981053 178981053 1 + G T UCEC 178981050 + 178981030 178981070 41 TGTTGAAGATGAAGAACTTACAAGAATCTTTGTTATGATAC TGTTGAAGATGAAGAACTTACAATAATCTTTGTTATGATAC < 41bp 0.889995847229612 0.61359229091091 0.24543819 0.05709642 prediction 0.552807112637404 Functional Loss - RBM45 ENSG00000155636 CDS Human protein_coding chr2:178981050 chr2:178981053 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_58600 0 0 1 0 2 RBM45 chr2:178981111 5'GT 178981111 Upstream 59bp
chr12 27113558 27113558 1 + G T UCEC 27113556 + 27113536 27113576 41 GAAGGCACTTGGAAGCAAATCAGAATGTACACTAAATAAAC GAAGGCACTTGGAAGCAAATCATAATGTACACTAAATAAAC < 41bp 0.829502769346517 0.553108527193332 0.15475348 0.08142322 prediction 0.552788484306371 Functional Loss - FGFR1OP2 ENSG00000111790 CDS Human protein_coding chr12:27113556 chr12:27113558 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_58603 0 0 1 0 1 FGFR1OP2 chr12:27113561 5'GT 27113561 Upstream 4bp
chr18 31322918 31322918 1 + C T CESC 31322916 + 31322896 31322936 41 ACCAGTCTCCAAACCTGAGTCTCGAGCATCCACTAGCACAT ACCAGTCTCCAAACCTGAGTCTTGAGCATCCACTAGCACAT < 41bp 0.776749967677166 0.500361958549428 0.1498844 0.07931626 prediction 0.552776018255478 Functional Loss - ASXL3 ENSG00000141431 CDS Human protein_coding chr18:31322916 chr18:31322918 stopgain 0.260 0 23 hm5C_associated_SNPs_58605 1 0 0 0 1 ASXL3 chr18:31322852 3'AG 31322852 Downstream 67bp
chr16 21693116 21693116 1 + G T LUAD 21693114 + 21693094 21693134 41 TCCTGGCCTATCTGAATTCCCGGAATGTTGCCTTCACCATC TCCTGGCCTATCTGAATTCCCGTAATGTTGCCTTCACCATC < 41bp 0.77638655827918 0.438000708180063 0.37934467 0.11070979 prediction 0.552773116558361 Functional Loss - OTOA ENSG00000155719 CDS Human protein_coding chr16:21693114 chr16:21693116 synonymous SNV . 0 23 hm5C_associated_SNPs_58607 0 0 0 0 2 OTOA chr16:21693059 3'AG 21693059 Downstream 58bp
chr16 21693116 21693116 1 + G T LUAD 21693114 + 21693094 21693134 41 TCCTGGCCTATCTGAATTCCCGGAATGTTGCCTTCACCATC TCCTGGCCTATCTGAATTCCCGTAATGTTGCCTTCACCATC < 41bp 0.77638655827918 0.438000708180063 0.37934467 0.11070979 prediction 0.552773116558361 Functional Loss - OTOA ENSG00000155719 CDS Human protein_coding chr16:21693114 chr16:21693116 synonymous SNV . 0 23 hm5C_associated_SNPs_58607 0 0 0 0 2 OTOA chr16:21693146 5'GT 21693146 Upstream 31bp
chr12 7014918 7014918 1 + G T BLCA 7014916 + 7014896 7014936 41 AAAAGAGGGGGAAGAGTTCCCTGAGGAAGTGAGAGCCTGGA AAAAGAGGGGGAAGAGTTCCCTTAGGAAGTGAGAGCCTGGA < 41bp 0.776368638231825 0.448959291989015 0.30355895 0.08375946 prediction 0.55273727646365 Functional Loss - LRRC23 ENSG00000010626 CDS Human protein_coding chr12:7014916 chr12:7014918 stopgain 0.824 0 23 hm5C_associated_SNPs_58609 0 0 0 0 1 LRRC23 chr12:7014923 5'GT 7014923 Upstream 6bp
chr16 31422800 31422800 1 + G C LUSC 31422799 + 31422779 31422819 41 GGTGCTGTCTACCTGTTTCACGGAGCCTCAGAATCCGGCAT GGTGCTGTCTACCTGTTTCACCGAGCCTCAGAATCCGGCAT < 41bp 0.82608759743648 0.549730761294415 0.9417424 0.84986705 prediction 0.552713672284131 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422799 chr16:31422800 nonsynonymous SNV 0.492 3 22 hm5C_associated_SNPs_58611 0 0 0 0 1 ITGAD chr16:31422838 5'GT 31422838 Upstream 39bp
chr3 158384153 158384153 1 + G T BLCA 158384150 + 158384130 158384170 41 GAAAGCCAAAAGTTGCCTTTCGAGAGACCATTACTGCCCCT GAAAGCCAAAAGTTGCCTTTCGATAGACCATTACTGCCCCT < 41bp 0.883306279145293 0.606955654709225 0.908885 0.14852947 prediction 0.552701248872136 Functional Loss - GFM1 ENSG00000168827 CDS Human protein_coding chr3:158384150 chr3:158384153 stopgain 1.000 1 24 hm5C_associated_SNPs_58612 0 0 1 0 2 GFM1 chr3:158384093 3'AG 158384093 Downstream 61bp
chr3 158384153 158384153 1 + G T BLCA 158384150 + 158384130 158384170 41 GAAAGCCAAAAGTTGCCTTTCGAGAGACCATTACTGCCCCT GAAAGCCAAAAGTTGCCTTTCGATAGACCATTACTGCCCCT < 41bp 0.883306279145293 0.606955654709225 0.908885 0.14852947 prediction 0.552701248872136 Functional Loss - GFM1 ENSG00000168827 CDS Human protein_coding chr3:158384150 chr3:158384153 stopgain 1.000 1 24 hm5C_associated_SNPs_58612 0 0 1 0 2 GFM1 chr3:158384175 5'GT 158384175 Upstream 23bp
chr1 57347138 57347138 1 + A T PRAD 57347134 + 57347114 57347154 41 GTAGGTACAATATCCTGACCCAGGAAGATGCTCAGAGTGTG GTAGGTACAATATCCTGACCCAGGTAGATGCTCAGAGTGTG < 41bp 0.820721470605363 0.544372856670203 0.5693207 0.5470084 prediction 0.552697227870321 Functional Loss - C8A ENSG00000157131 CDS Human protein_coding chr1:57347134 chr1:57347138 nonsynonymous SNV 0.811 1 25 hm5C_associated_SNPs_58613 0 0 0 0 1 C8A chr1:57347118 3'AG 57347118 Downstream 21bp
chr17 4498463 4498463 1 + A C UCEC 4498459 + 4498439 4498479 41 GCCCACCGCTGGTGACACCACCCCAGTCGCCCGTGTCCCCG GCCCACCGCTGGTGACACCACCCCCGTCGCCCGTGTCCCCG < 41bp 0.776335499018041 0.35249797350076 0.047588736 0.018998235 prediction 0.552670998036081 Functional Loss - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4498459 chr17:4498463 nonsynonymous SNV 0.622 0 25 hm5C_associated_SNPs_58615 0 0 0 0 1 SMTNL2 chr17:4498440 3'AG 4498440 Downstream 24bp
chr15 74238834 74238834 1 + G T COAD 74238831 + 74238811 74238851 41 TCCCCCAGCGCGTGAAGAACCAGGGCACAGCAGACTTCCTC TCCCCCAGCGCGTGAAGAACCAGTGCACAGCAGACTTCCTC < 41bp 0.902523241206209 0.626190953143176 0.91925484 0.9067368 prediction 0.552664576126066 Functional Loss - LOXL1 ENSG00000129038 CDS Human protein_coding chr15:74238831 chr15:74238834 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_58617 0 0 0 0 2 LOXL1 chr15:74238758 3'AG 74238758 Downstream 77bp
chr15 74238834 74238834 1 + G T COAD 74238831 + 74238811 74238851 41 TCCCCCAGCGCGTGAAGAACCAGGGCACAGCAGACTTCCTC TCCCCCAGCGCGTGAAGAACCAGTGCACAGCAGACTTCCTC < 41bp 0.902523241206209 0.626190953143176 0.91925484 0.9067368 prediction 0.552664576126066 Functional Loss - LOXL1 ENSG00000129038 CDS Human protein_coding chr15:74238831 chr15:74238834 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_58617 0 0 0 0 2 LOXL1 chr15:74238895 5'GT 74238895 Upstream 62bp
chr22 35719569 35719569 1 + G T KIRC 35719567 + 35719547 35719587 41 AGGACCTGCGGAGGAAAGGCCTGGAGTTCCCCATGACTGAC AGGACCTGCGGAGGAAAGGCCTTGAGTTCCCCATGACTGAC < 41bp 0.841130895652438 0.564810307902179 0.30705622 0.11499122 prediction 0.552641175500519 Functional Loss - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35719567 chr22:35719569 synonymous SNV . 0 23 hm5C_associated_SNPs_58619 0 0 1 0 1 TOM1 chr22:35719489 3'AG 35719489 Downstream 81bp
chr3 436506 436506 1 + G T STAD 436504 + 436484 436524 41 ACTTGAGGGCTTGCACTTCACAGGGCTGTGGAAAACCGATC ACTTGAGGGCTTGCACTTCACATGGCTGTGGAAAACCGATC < 41bp 0.776315187460508 0.439660154027064 0.90934455 0.33415335 prediction 0.552630374921017 Functional Loss - CHL1 ENSG00000134121 CDS Human protein_coding chr3:436504 chr3:436506 nonsynonymous SNV 0.918 0 23 hm5C_associated_SNPs_58620 0 0 0 0 1 CHL1 chr3:436555 5'GT 436555 Upstream 50bp
chr8 49986810 49986810 1 + G T UCEC 49986808 + 49986788 49986828 41 AATAGGGTTGCCTGAAGTGGCAGAATCCACCTGGTGGTTTA AATAGGGTTGCCTGAAGTGGCATAATCCACCTGGTGGTTTA < 41bp 0.776288041701219 0.458182112258282 0.7838448 0.18097591 prediction 0.552576083402438 Functional Loss - C8orf22 ENSG00000168333 CDS Human protein_coding chr8:49986808 chr8:49986810 stopgain 0.981 0 23 hm5C_associated_SNPs_58622 0 0 0 0 1 C8orf22 chr8:49986892 5'GT 49986892 Upstream 83bp
chr1 28858745 28858745 1 + G T COAD 28858742 + 28858722 28858762 41 AGGGACACATCAGTGGAGGGCTCGGAGATGGTCCCTGGGAA AGGGACACATCAGTGGAGGGCTCTGAGATGGTCCCTGGGAA < 41bp 0.776285293391993 0.384192213137819 0.24415872 0.33056664 prediction 0.552570586783986 Functional Loss - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28858742 chr1:28858745 synonymous SNV . 0 24 hm5C_associated_SNPs_58623 0 0 1 0 1 RCC1 chr1:28858683 3'AG 28858683 Downstream 63bp
chr7 2395043 2395043 1 + G C rs78680793 2395042 + 2395022 2395062 41 CCCGAGGACTTCGTGGACGACGTGAGCGAGGAAGGTGAGGG CCCGAGGACTTCGTGGACGACCTGAGCGAGGAAGGTGAGGG < 41bp 0.803932661863007 0.527649989209882 0.3552248 0.43210924 prediction 0.55256534530625 Functional Loss - EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395042 chr7:2395043 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_58624 0 0 1 0 1 EIF3B chr7:2395055 5'GT 2395055 Upstream 13bp
chr19 19613159 19613159 1 + G T THYM 19613156 + 19613136 19613176 41 GCAGGCCTCCAGCCAGCTGTCCCGGGGTTCGGCCACGACGC GCAGGCCTCCAGCCAGCTGTCCCTGGGTTCGGCCACGACGC < 41bp 0.77628018052822 0.381772791158697 0.83690214 0.14717177 prediction 0.55256036105644 Functional Loss - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19613156 chr19:19613159 nonsynonymous SNV 0.818 2 24 hm5C_associated_SNPs_58625 0 0 1 0 1 GATAD2A chr19:19613140 3'AG 19613140 Downstream 20bp
chr18 44030681 44030681 1 + C T SKCM 44030679 + 44030659 44030699 41 CTTTCCAGGAGCTGCTGCAGCTCGAGGACAGGTTGGGTAAT CTTTCCAGGAGCTGCTGCAGCTTGAGGACAGGTTGGGTAAT < 41bp 0.795827088825265 0.519560328155318 0.1701968 0.20499036 prediction 0.552533521339893 Functional Loss - RNF165 ENSG00000141622 CDS Human protein_coding chr18:44030679 chr18:44030681 synonymous SNV . 0 23 hm5C_associated_SNPs_58626 0 0 0 0 2 RNF165 chr18:44030667 3'AG 44030667 Downstream 15bp
chr18 44030681 44030681 1 + C T SKCM 44030679 + 44030659 44030699 41 CTTTCCAGGAGCTGCTGCAGCTCGAGGACAGGTTGGGTAAT CTTTCCAGGAGCTGCTGCAGCTTGAGGACAGGTTGGGTAAT < 41bp 0.795827088825265 0.519560328155318 0.1701968 0.20499036 prediction 0.552533521339893 Functional Loss - RNF165 ENSG00000141622 CDS Human protein_coding chr18:44030679 chr18:44030681 synonymous SNV . 0 23 hm5C_associated_SNPs_58626 0 0 0 0 2 RNF165 chr18:44030762 5'GT 44030762 Upstream 82bp
chr22 30165745 30165745 1 + G T rs368747090 30165742 + 30165722 30165762 41 CCCATCCAGGCCAGAAGGACCAGGTCCACCCAGCAGCTGTT CCCATCCAGGCCAGAAGGACCAGTTCCACCCAGCAGCTGTT < 41bp 0.776241494326534 0.390073881154104 0.7756038 0.29155594 prediction 0.552482988653068 Functional Loss - UQCR10 ENSG00000184076 UTR3 Human protein_coding chr22:30165742 chr22:30165745 . 0.130 0 24 hm5C_associated_SNPs_58628 0 0 1 0 1 UQCR10 chr22:30165667 3'AG 30165667 Downstream 79bp
chr5 55202103 55202103 1 + G T LUAD 55202100 + 55202080 55202120 41 TCTGTGTCTCAGGCCACGAACTGGACGATCCAGCAAGGTAG TCTGTGTCTCAGGCCACGAACTGTACGATCCAGCAAGGTAG < 41bp 0.899088056639172 0.622848295565264 0.76531565 0.43111756 prediction 0.552479522147815 Functional Loss - IL31RA ENSG00000164509 CDS Human protein_coding chr5:55202100 chr5:55202103 nonsynonymous SNV 0.930 3 24 hm5C_associated_SNPs_58629 0 0 0 0 1 IL31RA chr5:55202116 5'GT 55202116 Upstream 14bp
chr20 30672297 30672297 1 + C T LUAD 30672295 + 30672275 30672315 41 GGGAGATCCCTCGGGAATCCCTCAAGCTGGAGAAGAAACTT GGGAGATCCCTCGGGAATCCCTTAAGCTGGAGAAGAAACTT < 41bp 0.801739766811749 0.525510132738544 0.53540134 0.34123975 prediction 0.55245926814641 Functional Loss - HCK ENSG00000101336 CDS Human protein_coding chr20:30672295 chr20:30672297 synonymous SNV . 0 23 hm5C_associated_SNPs_58630 0 0 0 0 1 HCK chr20:30672346 5'GT 30672346 Upstream 50bp
chr12 57970117 57970117 1 + G T LAML 57970115 + 57970095 57970135 41 ACCGGCAGCTGGCCCGGCTCCGGGACGAGATCAACGAGAAG ACCGGCAGCTGGCCCGGCTCCGTGACGAGATCAACGAGAAG < 41bp 0.865250169614964 0.589032921732778 0.72083116 0.15114352 prediction 0.552434495764371 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57970115 chr12:57970117 synonymous SNV . 0 23 hm5C_associated_SNPs_58631 0 0 1 0 1 KIF5A chr12:57970052 3'AG 57970052 Downstream 66bp
chr19 30018287 30018287 1 + G C ACC 30018286 + 30018266 30018306 41 CGAGCTGGCGCTCAGCGTGCCGGGCGCCCGGAGCAAGGTAA CGAGCTGGCGCTCAGCGTGCCCGGCGCCCGGAGCAAGGTAA < 41bp 0.810623237629215 0.534414935705833 0.91070116 0.8221073 prediction 0.552416603846764 Functional Loss - VSTM2B ENSG00000187135 CDS Human protein_coding chr19:30018286 chr19:30018287 synonymous SNV . 0 22 hm5C_associated_SNPs_58632 0 0 0 0 1 VSTM2B chr19:30018302 5'GT 30018302 Upstream 16bp
chr3 73016867 73016867 1 + G T HNSC 73016865 + 73016845 73016885 41 GAGCACTCTATGAAGCAATACGGGATGTAAGTGTGCCCTTG GAGCACTCTATGAAGCAATACGTGATGTAAGTGTGCCCTTG < 41bp 0.855532910889446 0.579340999793961 0.8583911 0.29648155 prediction 0.552383822190971 Functional Loss - GXYLT2 ENSG00000172986 CDS Human protein_coding chr3:73016865 chr3:73016867 synonymous SNV . 0 23 hm5C_associated_SNPs_58638 0 0 1 0 1 GXYLT2 chr3:73016870 5'GT 73016870 Upstream 4bp
chr7 48081045 48081045 1 + G T UCEC 48081042 + 48081022 48081062 41 CTCACACAGCGAGAACCTGCCTGGGACTCGGAGATACTGGA CTCACACAGCGAGAACCTGCCTGTGACTCGGAGATACTGGA < 41bp 0.776190831749654 0.389578223321128 0.31907254 0.11026403 prediction 0.552381663499309 Functional Loss - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48081042 chr7:48081045 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_58639 0 0 0 0 1 C7orf57 chr7:48081116 5'GT 48081116 Upstream 72bp
chr11 5013249 5013249 1 + G T PAAD 5013247 + 5013227 5013267 41 TTGGGCATTCTTTGGGCCTGCAGCACTCTGGGAATCAGAGC TTGGGCATTCTTTGGGCCTGCATCACTCTGGGAATCAGAGC < 41bp 0.776190054668859 0.441883716088369 0.28157026 0.12741649 prediction 0.552380109337719 Functional Loss - MMP26 ENSG00000167346 CDS Human protein_coding chr11:5013247 chr11:5013249 nonsynonymous SNV 0.368 0 23 hm5C_associated_SNPs_58640 0 0 0 0 1 MMP26 chr11:5013194 3'AG 5013194 Downstream 56bp
chr4 81188293 81188293 1 + G T HNSC 81188291 + 81188271 81188311 41 GTTTCCATCTGCAGATCTACCCGGATGGCAAAGTCAATGGA GTTTCCATCTGCAGATCTACCCTGATGGCAAAGTCAATGGA < 41bp 0.849148313414756 0.572967053508155 0.4834512 0.024016678 prediction 0.552362519813202 Functional Loss - FGF5 ENSG00000138675 CDS Human protein_coding chr4:81188291 chr4:81188293 synonymous SNV . 0 23 hm5C_associated_SNPs_58641 0 0 0 0 1 FGF5 chr4:81188333 5'GT 81188333 Upstream 41bp
chr8 24261532 24261532 1 + G T UCEC 24261530 + 24261510 24261550 41 TTGAAGGAGTGTACCAATCTCTGCTGTGAAGCCCTAACGTG TTGAAGGAGTGTACCAATCTCTTCTGTGAAGCCCTAACGTG < 41bp 0.776160336032221 0.459763557275003 0.037735492 0.050436288 prediction 0.552320672064443 Functional Loss - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24261530 chr8:24261532 nonsynonymous SNV 0.078 4 23 hm5C_associated_SNPs_58645 0 0 0 0 2 ADAMDEC1 chr8:24261516 3'AG 24261516 Downstream 17bp
chr8 24261532 24261532 1 + G T UCEC 24261530 + 24261510 24261550 41 TTGAAGGAGTGTACCAATCTCTGCTGTGAAGCCCTAACGTG TTGAAGGAGTGTACCAATCTCTTCTGTGAAGCCCTAACGTG < 41bp 0.776160336032221 0.459763557275003 0.037735492 0.050436288 prediction 0.552320672064443 Functional Loss - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24261530 chr8:24261532 nonsynonymous SNV 0.078 4 23 hm5C_associated_SNPs_58645 0 0 0 0 2 ADAMDEC1 chr8:24261601 5'GT 24261601 Upstream 70bp
chrX 130220601 130220601 1 + G T BLCA 130220598 + 130220578 130220618 41 AGTGGAAACCTCTGCTGAAGCCCGGGCTGCTGTCCTTGCTC AGTGGAAACCTCTGCTGAAGCCCTGGCTGCTGTCCTTGCTC < 41bp 0.776150030373825 0.37445734041899 0.6524055 0.2636618 prediction 0.55230006074765 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220598 chrX:130220601 nonsynonymous SNV 0.697 1 24 hm5C_associated_SNPs_58646 0 0 0 0 2 ARHGAP36 chrX:130220533 3'AG 130220533 Downstream 69bp
chrX 130220601 130220601 1 + G T BLCA 130220598 + 130220578 130220618 41 AGTGGAAACCTCTGCTGAAGCCCGGGCTGCTGTCCTTGCTC AGTGGAAACCTCTGCTGAAGCCCTGGCTGCTGTCCTTGCTC < 41bp 0.776150030373825 0.37445734041899 0.6524055 0.2636618 prediction 0.55230006074765 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220598 chrX:130220601 nonsynonymous SNV 0.697 1 24 hm5C_associated_SNPs_58646 0 0 0 0 2 ARHGAP36 chrX:130220639 5'GT 130220639 Upstream 39bp
chr15 65937975 65937975 1 + G C PAAD 65937971 + 65937951 65937991 41 GGAGGAGCCAGCCAAGCTCCCTGCGGTCACGGTCACACCAG GGAGGAGCCAGCCAAGCTCCCTGCCGTCACGGTCACACCAG < 41bp 0.776149211015719 0.482915306975593 0.37632266 0.10841605 prediction 0.552298422031438 Functional Loss - SLC24A1 ENSG00000074621 CDS Human protein_coding chr15:65937971 chr15:65937975 synonymous SNV . 0 25 hm5C_associated_SNPs_58647 0 0 0 0 2 SLC24A1 chr15:65937950 3'AG 65937950 Downstream 26bp
chr15 65937975 65937975 1 + G C PAAD 65937971 + 65937951 65937991 41 GGAGGAGCCAGCCAAGCTCCCTGCGGTCACGGTCACACCAG GGAGGAGCCAGCCAAGCTCCCTGCCGTCACGGTCACACCAG < 41bp 0.776149211015719 0.482915306975593 0.37632266 0.10841605 prediction 0.552298422031438 Functional Loss - SLC24A1 ENSG00000074621 CDS Human protein_coding chr15:65937971 chr15:65937975 synonymous SNV . 0 25 hm5C_associated_SNPs_58647 0 0 0 0 2 SLC24A1 chr15:65938041 5'GT 65938041 Upstream 67bp
chr1 21771694 21771694 1 + G T UCEC 21771691 + 21771671 21771711 41 CACATGGTGTGGGCCGACATCAAGAGCTGCGAGATCCAACA CACATGGTGTGGGCCGACATCAATAGCTGCGAGATCCAACA < 41bp 0.876745630739908 0.600598400772605 0.8925221 0.36991096 prediction 0.552294459934606 Functional Loss - NBPF3 ENSG00000142794 CDS Human protein_coding chr1:21771691 chr1:21771694 stopgain 0.013 0 24 hm5C_associated_SNPs_58648 0 0 0 0 1 NBPF3 chr1:21771712 5'GT 21771712 Upstream 19bp
chrX 205453 205453 1 + G T LUSC 205450 + 205430 205470 41 ACAAGAAGTCCCCCATTTCGCACGAGGAGTCCCGGCTGCTG ACAAGAAGTCCCCCATTTCGCACTAGGAGTCCCGGCTGCTG < 41bp 0.902436017563285 0.626332745503472 0.1982907 0.06984055 prediction 0.552206544119627 Functional Loss - PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:205450 chrX:205453 stopgain 0.017 0 24 hm5C_associated_SNPs_58652 0 0 1 0 2 PLCXD1 chrX:205400 3'AG 205400 Downstream 54bp
chrX 205453 205453 1 + G T LUSC 205450 + 205430 205470 41 ACAAGAAGTCCCCCATTTCGCACGAGGAGTCCCGGCTGCTG ACAAGAAGTCCCCCATTTCGCACTAGGAGTCCCGGCTGCTG < 41bp 0.902436017563285 0.626332745503472 0.1982907 0.06984055 prediction 0.552206544119627 Functional Loss - PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:205450 chrX:205453 stopgain 0.017 0 24 hm5C_associated_SNPs_58652 0 0 1 0 2 PLCXD1 chrX:205536 5'GT 205536 Upstream 84bp
chr6 52052535 52052535 1 + G T LUAD 52052532 + 52052512 52052552 41 GTCAACCTGAACATCCATAACCGGAATACCAATACCAATCC GTCAACCTGAACATCCATAACCGTAATACCAATACCAATCC < 41bp 0.897988170606002 0.621896830057147 0.66476464 0.20057398 prediction 0.55218268109771 Functional Loss - IL17A ENSG00000112115 CDS Human protein_coding chr6:52052532 chr6:52052535 synonymous SNV . 0 24 hm5C_associated_SNPs_58654 0 0 0 0 1 IL17A chr6:52052603 5'GT 52052603 Upstream 69bp
chr11 63670616 63670616 1 + G T LUSC 63670614 + 63670594 63670634 41 GCCTCGGCCAGGCCTCCATCCAGAATGGCAAAGACAGGTGA GCCTCGGCCAGGCCTCCATCCATAATGGCAAAGACAGGTGA < 41bp 0.776089296423403 0.433410152097709 0.21347436 0.15792605 prediction 0.552178592846805 Functional Loss - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63670614 chr11:63670616 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_58655 0 0 1 0 2 MARK2 chr11:63670533 3'AG 63670533 Downstream 84bp
chr11 63670616 63670616 1 + G T LUSC 63670614 + 63670594 63670634 41 GCCTCGGCCAGGCCTCCATCCAGAATGGCAAAGACAGGTGA GCCTCGGCCAGGCCTCCATCCATAATGGCAAAGACAGGTGA < 41bp 0.776089296423403 0.433410152097709 0.21347436 0.15792605 prediction 0.552178592846805 Functional Loss - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63670614 chr11:63670616 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_58655 0 0 1 0 2 MARK2 chr11:63670630 5'GT 63670630 Upstream 15bp
chr14 93299613 93299613 1 + C T rs533608285 93299611 + 93299591 93299631 41 TGGTCTTTCAACTGGAGCGCCTCGAACAGCAGATGAACTCC TGGTCTTTCAACTGGAGCGCCTTGAACAGCAGATGAACTCC < 41bp 0.776078510754468 0.485933308026589 0.9235791 0.1810152 prediction 0.552157021508936 Functional Loss - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93299611 chr14:93299613 synonymous SNV . 0 23 hm5C_associated_SNPs_58656 0 0 1 0 1 GOLGA5 chr14:93299692 5'GT 93299692 Upstream 80bp
chr7 116830916 116830916 1 + G T LUAD 116830913 + 116830893 116830933 41 CTCCTGAGGCTGCATCTCGGCGGGGGCTGAGCACAGCAGAG CTCCTGAGGCTGCATCTCGGCGGTGGCTGAGCACAGCAGAG < 41bp 0.90118717896943 0.625115068416994 0.90117526 0.42890495 prediction 0.552144221104873 Functional Loss - ST7 ENSG00000004866 CDS Human protein_coding chr7:116830913 chr7:116830916 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_58658 0 0 1 0 2 ST7 chr7:116830888 3'AG 116830888 Downstream 29bp
chr7 116830916 116830916 1 + G T LUAD 116830913 + 116830893 116830933 41 CTCCTGAGGCTGCATCTCGGCGGGGGCTGAGCACAGCAGAG CTCCTGAGGCTGCATCTCGGCGGTGGCTGAGCACAGCAGAG < 41bp 0.90118717896943 0.625115068416994 0.90117526 0.42890495 prediction 0.552144221104873 Functional Loss - ST7 ENSG00000004866 CDS Human protein_coding chr7:116830913 chr7:116830916 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_58658 0 0 1 0 2 ST7 chr7:116830990 5'GT 116830990 Upstream 75bp
chr17 4437100 4437100 1 + G T LUSC 4437097 + 4437077 4437117 41 CGGCAGATCTGTATCTTCGTCGGGGAGACGCTGCTGTTTTC CGGCAGATCTGTATCTTCGTCGGTGAGACGCTGCTGTTTTC < 41bp 0.77603093571573 0.381420949132419 0.9257699 0.51734567 prediction 0.55206187143146 Functional Loss - SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4437097 chr17:4437100 synonymous SNV . 0 24 hm5C_associated_SNPs_58665 0 0 1 0 2 SPNS2 chr17:4437083 3'AG 4437083 Downstream 18bp
chr17 4437100 4437100 1 + G T LUSC 4437097 + 4437077 4437117 41 CGGCAGATCTGTATCTTCGTCGGGGAGACGCTGCTGTTTTC CGGCAGATCTGTATCTTCGTCGGTGAGACGCTGCTGTTTTC < 41bp 0.77603093571573 0.381420949132419 0.9257699 0.51734567 prediction 0.55206187143146 Functional Loss - SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4437097 chr17:4437100 synonymous SNV . 0 24 hm5C_associated_SNPs_58665 0 0 1 0 2 SPNS2 chr17:4437148 5'GT 4437148 Upstream 49bp
chr5 82554470 82554470 1 + G T LUAD 82554468 + 82554448 82554488 41 CAGAACCTAAAATGGCTCCTCAGGAGAATCAGCTTCAAGAA CAGAACCTAAAATGGCTCCTCATGAGAATCAGCTTCAAGAA < 41bp 0.841170895498036 0.565150324072357 0.8966359 0.1242761 prediction 0.552041142851358 Functional Loss - XRCC4 ENSG00000152422 CDS Human protein_coding chr5:82554468 chr5:82554470 nonsynonymous SNV 0.975 1 23 hm5C_associated_SNPs_58668 0 0 0 4 1 XRCC4 chr5:82554496 5'GT 82554496 Upstream 27bp
chr12 22814072 22814072 1 + G T SARC 22814070 + 22814050 22814090 41 TGAAGGAGATTCTTTCCAACCTGGGCTCACCTGTTGTGCTT TGAAGGAGATTCTTTCCAACCTTGGCTCACCTGTTGTGCTT < 41bp 0.836411750185561 0.56042046670511 0.22087073 0.023289025 prediction 0.551982566960902 Functional Loss - ETNK1 ENSG00000139163 CDS Human protein_coding chr12:22814070 chr12:22814072 synonymous SNV . 0 23 hm5C_associated_SNPs_58672 0 0 1 0 2 ETNK1 chr12:22813997 3'AG 22813997 Downstream 76bp
chr12 22814072 22814072 1 + G T SARC 22814070 + 22814050 22814090 41 TGAAGGAGATTCTTTCCAACCTGGGCTCACCTGTTGTGCTT TGAAGGAGATTCTTTCCAACCTTGGCTCACCTGTTGTGCTT < 41bp 0.836411750185561 0.56042046670511 0.22087073 0.023289025 prediction 0.551982566960902 Functional Loss - ETNK1 ENSG00000139163 CDS Human protein_coding chr12:22814070 chr12:22814072 synonymous SNV . 0 23 hm5C_associated_SNPs_58672 0 0 1 0 2 ETNK1 chr12:22814139 5'GT 22814139 Upstream 68bp
chr17 58711271 58711271 1 + C T GBM 58711269 + 58711249 58711289 41 GGAAACGACCTCGACTCACTCACAATGGACCTGTTAGAAGG GGAAACGACCTCGACTCACTCATAATGGACCTGTTAGAAGG < 41bp 0.776362401436704 0.500371755686948 0.07500565 0.23100099 prediction 0.551981291499511 Functional Loss - PPM1D ENSG00000170836 CDS Human protein_coding chr17:58711269 chr17:58711271 synonymous SNV . 0 23 hm5C_associated_SNPs_58673 0 0 1 0 1 PPM1D chr17:58711338 5'GT 58711338 Upstream 68bp
chr19 41627926 41627926 1 + A T rs186744518 41627922 + 41627902 41627942 41 GGCCGCACCAACGCATCTTCCAGAACTTCAAGTGCCTGAGA GGCCGCACCAACGCATCTTCCAGATCTTCAAGTGCCTGAGA < 41bp 0.828812862698156 0.552826379060668 0.82428855 0.4555673 prediction 0.551972967274978 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41627922 chr19:41627926 nonsynonymous SNV 0.194 2 25 hm5C_associated_SNPs_58674 0 0 0 0 1 CYP2F1 chr19:41627862 3'AG 41627862 Downstream 65bp
chr19 5686478 5686478 1 + G T SARC 5686476 + 5686456 5686496 41 CCCCAAGGTCTTCTACATCGCGGCGGACATGGCCTCCCCTG CCCCAAGGTCTTCTACATCGCGTCGGACATGGCCTCCCCTG < 41bp 0.861434130235076 0.585448508527384 0.9259082 0.3381384 prediction 0.551971243415383 Functional Loss - HSD11B1L ENSG00000167733 CDS Human protein_coding chr19:5686476 chr19:5686478 nonsynonymous SNV 0.753 1 23 hm5C_associated_SNPs_58675 0 0 1 0 2 HSD11B1L chr19:5686427 3'AG 5686427 Downstream 52bp
chr19 5686478 5686478 1 + G T SARC 5686476 + 5686456 5686496 41 CCCCAAGGTCTTCTACATCGCGGCGGACATGGCCTCCCCTG CCCCAAGGTCTTCTACATCGCGTCGGACATGGCCTCCCCTG < 41bp 0.861434130235076 0.585448508527384 0.9259082 0.3381384 prediction 0.551971243415383 Functional Loss - HSD11B1L ENSG00000167733 CDS Human protein_coding chr19:5686476 chr19:5686478 nonsynonymous SNV 0.753 1 23 hm5C_associated_SNPs_58675 0 0 1 0 2 HSD11B1L chr19:5686538 5'GT 5686538 Upstream 61bp
chr5 41904475 41904475 1 + G C UCS 41904474 + 41904454 41904494 41 CCCGCCGATTGTGGCCATGGCGGCCGCAGTCTCTAGTGTGG CCCGCCGATTGTGGCCATGGCCGCCGCAGTCTCTAGTGTGG < 41bp 0.775977135963746 0.497834923942843 0.54772615 0.35433733 prediction 0.551954271927493 Functional Loss - C5orf51 ENSG00000205765 CDS Human protein_coding chr5:41904474 chr5:41904475 synonymous SNV . 0 22 hm5C_associated_SNPs_58676 0 0 1 0 1 C5orf51 chr5:41904569 5'GT 41904569 Upstream 95bp
chr13 19920094 19920094 1 + A T rs143266749 19920090 + 19920070 19920110 41 GCCTGCCTCTGCCAAGAGACCAGCATCTCGGCCTGAGCACT GCCTGCCTCTGCCAAGAGACCAGCTTCTCGGCCTGAGCACT < 41bp 0.775967179248094 0.495060026612573 0.09569514 0.07956836 prediction 0.551934358496187 Functional Loss - LINC00421 ENSG00000236834 ncRNA_exonic Human lincRNA chr13:19920090 chr13:19920094 . . 0 25 hm5C_associated_SNPs_58678 0 0 0 0 1 LINC00421 chr13:19920005 3'AG 19920005 Downstream 90bp
chr8 102656453 102656453 1 + G T LUAD 102656450 + 102656430 102656470 41 TGAAAGAAGAAGGGACAAAGCGAGGTATCTCTCCTGCTGGG TGAAAGAAGAAGGGACAAAGCGATGTATCTCTCCTGCTGGG < 41bp 0.775953496093861 0.417534703990196 0.93365085 0.43798944 prediction 0.551906992187721 Functional Loss - GRHL2 ENSG00000083307 CDS Human protein_coding chr8:102656450 chr8:102656453 nonsynonymous SNV 0.871 2 24 hm5C_associated_SNPs_58680 0 0 0 0 2 GRHL2 chr8:102656359 3'AG 102656359 Downstream 95bp
chr8 102656453 102656453 1 + G T LUAD 102656450 + 102656430 102656470 41 TGAAAGAAGAAGGGACAAAGCGAGGTATCTCTCCTGCTGGG TGAAAGAAGAAGGGACAAAGCGATGTATCTCTCCTGCTGGG < 41bp 0.775953496093861 0.417534703990196 0.93365085 0.43798944 prediction 0.551906992187721 Functional Loss - GRHL2 ENSG00000083307 CDS Human protein_coding chr8:102656450 chr8:102656453 nonsynonymous SNV 0.871 2 24 hm5C_associated_SNPs_58680 0 0 0 0 2 GRHL2 chr8:102656453 5'GT 102656453 Upstream 1bp
chr11 67378885 67378885 1 + G T UCEC 67378883 + 67378863 67378903 41 TGGGGCCCCAGGGGGTGTCACGGGCGGCTGGGACAACCTCC TGGGGCCCCAGGGGGTGTCACGTGCGGCTGGGACAACCTCC < 41bp 0.872212603737536 0.596262187262882 0.9299475 0.9089164 prediction 0.551900832949306 Functional Loss - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67378883 chr11:67378885 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_58681 0 0 1 0 1 NDUFV1 chr11:67378874 3'AG 67378874 Downstream 12bp
chr14 77294667 77294667 1 + G T SARC 77294665 + 77294645 77294685 41 ATTGAGCCAGTACGACAGAGCAGCGATAAAATGCTCTACTG ATTGAGCCAGTACGACAGAGCATCGATAAAATGCTCTACTG < 41bp 0.775938869478332 0.437762567727332 0.7878788 0.13011956 prediction 0.551877738956664 Functional Loss - LRRC74A ENSG00000100565 CDS Human protein_coding chr14:77294665 chr14:77294667 nonsynonymous SNV 0.007 3 23 hm5C_associated_SNPs_58682 0 0 0 0 1 LRRC74A chr14:77294634 3'AG 77294634 Downstream 34bp
chr3 189028214 189028214 1 + G T LUAD 189028212 + 189028192 189028232 41 TTAGGATCTACTGGGGGAGTCCGGAGGAGCAGTCTCTTCTG TTAGGATCTACTGGGGGAGTCCTGAGGAGCAGTCTCTTCTG < 41bp 0.866028379598141 0.590099596617094 0.92698765 0.6818903 prediction 0.551857565962094 Functional Loss - TPRG1 ENSG00000188001 CDS Human protein_coding chr3:189028212 chr3:189028214 synonymous SNV . 0 23 hm5C_associated_SNPs_58684 0 0 0 0 1 TPRG1 chr3:189028175 3'AG 189028175 Downstream 40bp
chr2 109463278 109463278 1 + C T SKCM 109463276 + 109463256 109463296 41 TAAAGGAATTCAGGATAATTCTCCACAGCATTCTGTGGAGA TAAAGGAATTCAGGATAATTCTTCACAGCATTCTGTGGAGA < 41bp 0.794921336860229 0.518994252141041 0.9229177 0.05780825 prediction 0.551854169438375 Functional Loss - CCDC138 ENSG00000163006 CDS Human protein_coding chr2:109463276 chr2:109463278 nonsynonymous SNV 0.579 0 23 hm5C_associated_SNPs_58685 0 0 1 0 1 CCDC138 chr2:109463194 3'AG 109463194 Downstream 85bp
chr1 159169615 159169615 1 - C A LUSC 159169617 - 159169597 159169637 41 AAGATGAGCATGATGAGCAGCAGGAAGACAATGAAAGCCAC AAGATGAGCATGATGAGCAGCATGAAGACAATGAAAGCCAC < 41bp 0.862081125488085 0.586162025353112 0.25063822 0.10377839 prediction 0.551838200269946 Functional Loss - CADM3 ENSG00000162706 CDS Human protein_coding chr1:159169617 chr1:159169615 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_58688 0 0 0 0 2 CADM3 chr1:159169576 5'GT 159169576 Upstream 40bp
chr1 159169615 159169615 1 - C A LUSC 159169617 - 159169597 159169637 41 AAGATGAGCATGATGAGCAGCAGGAAGACAATGAAAGCCAC AAGATGAGCATGATGAGCAGCATGAAGACAATGAAAGCCAC < 41bp 0.862081125488085 0.586162025353112 0.25063822 0.10377839 prediction 0.551838200269946 Functional Loss - CADM3 ENSG00000162706 CDS Human protein_coding chr1:159169617 chr1:159169615 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_58688 0 0 0 0 2 CADM3 chr1:159169649 3'AG 159169649 Downstream 35bp
chr1 228335351 228335351 1 + G T UCEC 228335348 + 228335328 228335368 41 CGGCAGCGCAACACTGAAACCGAGGAGAGCCTGGTGAAGCG CGGCAGCGCAACACTGAAACCGATGAGAGCCTGGTGAAGCG < 41bp 0.904256995526652 0.628339199192773 0.8880428 0.5271757 prediction 0.551835592667757 Functional Loss - GUK1 ENSG00000143774 CDS Human protein_coding chr1:228335348 chr1:228335351 nonsynonymous SNV 0.970 1 24 hm5C_associated_SNPs_58689 0 0 1 0 2 GUK1 chr1:228335316 3'AG 228335316 Downstream 36bp
chr1 228335351 228335351 1 + G T UCEC 228335348 + 228335328 228335368 41 CGGCAGCGCAACACTGAAACCGAGGAGAGCCTGGTGAAGCG CGGCAGCGCAACACTGAAACCGATGAGAGCCTGGTGAAGCG < 41bp 0.904256995526652 0.628339199192773 0.8880428 0.5271757 prediction 0.551835592667757 Functional Loss - GUK1 ENSG00000143774 CDS Human protein_coding chr1:228335348 chr1:228335351 nonsynonymous SNV 0.970 1 24 hm5C_associated_SNPs_58689 0 0 1 0 2 GUK1 chr1:228335400 5'GT 228335400 Upstream 50bp
chr19 39390757 39390757 1 + G T SARC 39390755 + 39390735 39390775 41 GGGCTCCCTGGGTCCGGACGCAGCGGCCCCCGGAGGACCTG GGGCTCCCTGGGTCCGGACGCATCGGCCCCCGGAGGACCTG < 41bp 0.875988536096498 0.6000958610873 0.79953426 0.16689584 prediction 0.551785350018394 Functional Loss - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39390755 chr19:39390757 nonsynonymous SNV 0.990 0 23 hm5C_associated_SNPs_58693 0 0 0 0 1 NFKBIB chr19:39390851 5'GT 39390851 Upstream 95bp
chr7 142961652 142961652 1 + C T SKCM 142961650 + 142961630 142961670 41 TCTCCTGGCAGGAAACAAGCCTCCAGGTCTGCTTCCCCGCA TCTCCTGGCAGGAAACAAGCCTTCAGGTCTGCTTCCCCGCA < 41bp 0.794789944148014 0.518901311263344 0.9337709 0.09697366 prediction 0.55177726576934 Functional Loss - GSTK1 ENSG00000197448 CDS Human protein_coding chr7:142961650 chr7:142961652 nonsynonymous SNV 0.103 4 23 hm5C_associated_SNPs_58695 0 0 1 0 1 GSTK1 chr7:142961641 3'AG 142961641 Downstream 12bp
chr9 131262412 131262412 1 + A C LUAD 131262408 + 131262388 131262428 41 CGCCTGGAGCAGTCCGAGAGCACCAACCGCAGCATGCAGAA CGCCTGGAGCAGTCCGAGAGCACCCACCGCAGCATGCAGAA < 41bp 0.775885976860282 0.388658048913485 0.20917442 0.11441037 prediction 0.551771953720565 Functional Loss - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131262408 chr9:131262412 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_58696 0 0 1 0 1 ODF2 chr9:131262346 3'AG 131262346 Downstream 67bp
chr3 152163159 152163159 1 + C T STAD 152163157 + 152163137 152163177 41 GCTGACAGCACAATGATTGACACCAATGACAACACAGTCAC GCTGACAGCACAATGATTGACATCAATGACAACACAGTCAC < 41bp 0.77588193435317 0.495794141854427 0.02383864 0.018570632 prediction 0.551763868706341 Functional Loss - MBNL1 ENSG00000152601 CDS Human protein_coding chr3:152163157 chr3:152163159 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_58697 0 0 1 0 1 MBNL1 chr3:152163071 3'AG 152163071 Downstream 89bp
chr16 20788842 20788842 1 + C T BRCA 20788840 + 20788820 20788860 41 TCCAAATGTGAAAATCTGCACTCCAAGCTGATTGTATCAGA TCCAAATGTGAAAATCTGCACTTCAAGCTGATTGTATCAGA < 41bp 0.775880562413201 0.483383722709923 0.9123194 0.025108725 prediction 0.551761124826402 Functional Loss - ACSM3 ENSG00000005187 CDS Human protein_coding chr16:20788840 chr16:20788842 nonsynonymous SNV 0.994 0 23 hm5C_associated_SNPs_58698 0 0 1 0 1 ACSM3 chr16:20788902 5'GT 20788902 Upstream 61bp
chr14 54878228 54878228 1 + G T UCEC 54878225 + 54878205 54878245 41 AACTAAAGAGCTGTGGTATACAAGACATATTTGTTTTCTGC AACTAAAGAGCTGTGGTATACAATACATATTTGTTTTCTGC < 41bp 0.775868907321556 0.408841313101752 0.3866509 0.11556783 prediction 0.551737814643112 Functional Loss - CDKN3 ENSG00000100526 CDS Human protein_coding chr14:54878225 chr14:54878228 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_58702 0 0 1 0 1 CDKN3 chr14:54878202 3'AG 54878202 Downstream 27bp
chr3 129249874 129249874 1 + G C HNSC 129249873 + 129249853 129249893 41 GCCTGCGCCGCACCCCCACTCGCCGGCTGGTCCAGGTAATG GCCTGCGCCGCACCCCCACTCCCCGGCTGGTCCAGGTAATG < 41bp 0.775845281112123 0.471619433991316 0.37846497 0.057123363 prediction 0.551690562224247 Functional Loss - RHO ENSG00000163914 CDS Human protein_coding chr3:129249873 chr3:129249874 nonsynonymous SNV 0.029 1 22 hm5C_associated_SNPs_58708 0 0 0 0 1 RHO chr3:129249887 5'GT 129249887 Upstream 14bp
chr4 89425666 89425666 1 + A T UCEC 89425662 + 89425642 89425682 41 CTAGAATGCACGTTATGAACCAGGATATAACAGTTCACATC CTAGAATGCACGTTATGAACCAGGTTATAACAGTTCACATC < 41bp 0.775839084375017 0.476660679329227 0.66824245 0.42345405 prediction 0.551678168750034 Functional Loss - HERC5 ENSG00000138646 CDS Human protein_coding chr4:89425662 chr4:89425666 synonymous SNV . 0 25 hm5C_associated_SNPs_58709 0 0 0 0 2 HERC5 chr4:89425646 3'AG 89425646 Downstream 21bp
chr4 89425666 89425666 1 + A T UCEC 89425662 + 89425642 89425682 41 CTAGAATGCACGTTATGAACCAGGATATAACAGTTCACATC CTAGAATGCACGTTATGAACCAGGTTATAACAGTTCACATC < 41bp 0.775839084375017 0.476660679329227 0.66824245 0.42345405 prediction 0.551678168750034 Functional Loss - HERC5 ENSG00000138646 CDS Human protein_coding chr4:89425662 chr4:89425666 synonymous SNV . 0 25 hm5C_associated_SNPs_58709 0 0 0 0 2 HERC5 chr4:89425748 5'GT 89425748 Upstream 83bp
chr16 24909316 24909316 1 + G T LUSC 24909313 + 24909293 24909333 41 AGGTGATTGTCCAGCGGACTCTGGCTGCCAAGAACCTGTCC AGGTGATTGTCCAGCGGACTCTGTCTGCCAAGAACCTGTCC < 41bp 0.775832924474627 0.382375106633828 0.121659696 0.05381462 prediction 0.551665848949253 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24909313 chr16:24909316 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_58710 0 0 0 0 1 SLC5A11 chr16:24909295 3'AG 24909295 Downstream 22bp
chr5 34863043 34863043 1 + G T GBM 34863040 + 34863020 34863060 41 AAGAAACATGCTACATCAGCCAAGAATACACTGTTGACCTG AAGAAACATGCTACATCAGCCAATAATACACTGTTGACCTG < 41bp 0.775825571256481 0.413008984823308 0.09543997 0.32027215 prediction 0.551651142512961 Functional Loss - TTC23L ENSG00000205838 CDS Human protein_coding chr5:34863040 chr5:34863043 stopgain 0.618 2 24 hm5C_associated_SNPs_58712 0 0 0 0 1 TTC23L chr5:34863003 3'AG 34863003 Downstream 41bp
chr17 41020181 41020181 1 + G T rs145088470 41020179 + 41020159 41020199 41 GCTGATCCCAGACAATGGCACAGGTGGGTCCTGGTCCCTGA GCTGATCCCAGACAATGGCACATGTGGGTCCTGGTCCCTGA < 41bp 0.85632081788882 0.580498337343966 0.8236475 0.43279186 prediction 0.551644961089708 Functional Loss - AOC4P ENSG00000260105 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:41020179 chr17:41020181 . . 0 23 hm5C_associated_SNPs_58714 0 0 0 0 1 AOC4P chr17:41020181 5'GT 41020181 Upstream 1bp
chr8 6301970 6301970 1 + G T THYM 6301968 + 6301948 6301988 41 TGATGATCTTTGTGGAAACTCAGGATGTGGAAATCAGGAAA TGATGATCTTTGTGGAAACTCATGATGTGGAAATCAGGAAA < 41bp 0.825152083101505 0.549345751222401 0.74898535 0.17365646 prediction 0.551612663758207 Functional Loss - MCPH1 ENSG00000147316 CDS Human protein_coding chr8:6301968 chr8:6301970 stopgain 0.566 0 23 hm5C_associated_SNPs_58715 0 0 1 0 1 MCPH1 chr8:6301914 3'AG 6301914 Downstream 57bp
chr15 78764260 78764260 1 + G T LUAD 78764257 + 78764237 78764277 41 TGGTGAATGGTTTAGGGATTCTGGGGTGGGGTAAGTAAATG TGGTGAATGGTTTAGGGATTCTGTGGTGGGGTAAGTAAATG < 41bp 0.775785873558276 0.413178913134165 0.8801953 0.27860266 prediction 0.551571747116551 Functional Loss - IREB2 ENSG00000136381 CDS Human protein_coding chr15:78764257 chr15:78764260 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_58719 0 0 1 0 1 IREB2 chr15:78764266 5'GT 78764266 Upstream 7bp
chrX 64955277 64955277 1 + A T UCEC 64955273 + 64955253 64955293 41 CACAGGCCCGGGAGGAGAAGCACCAGAAGCAGATGGAGCGG CACAGGCCCGGGAGGAGAAGCACCTGAAGCAGATGGAGCGG < 41bp 0.863422217480731 0.58763682693533 0.26843607 0.36761564 prediction 0.551570781090802 Functional Loss - MSN ENSG00000147065 CDS Human protein_coding chrX:64955273 chrX:64955277 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_58720 0 0 1 0 1 MSN chrX:64955292 5'GT 64955292 Upstream 16bp
chr17 20156834 20156834 1 + G T PAAD 20156832 + 20156812 20156852 41 TTACAGAGGCATTCGACTTACAGCAGTGTGCGGCCAGCCAG TTACAGAGGCATTCGACTTACATCAGTGTGCGGCCAGCCAG < 41bp 0.851812677314947 0.576040453331239 0.45824233 0.39677614 prediction 0.551544447967415 Functional Loss - SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20156832 chr17:20156834 nonsynonymous SNV 0.229 1 23 hm5C_associated_SNPs_58721 0 0 1 0 2 SPECC1 chr17:20156818 3'AG 20156818 Downstream 17bp
chr17 20156834 20156834 1 + G T PAAD 20156832 + 20156812 20156852 41 TTACAGAGGCATTCGACTTACAGCAGTGTGCGGCCAGCCAG TTACAGAGGCATTCGACTTACATCAGTGTGCGGCCAGCCAG < 41bp 0.851812677314947 0.576040453331239 0.45824233 0.39677614 prediction 0.551544447967415 Functional Loss - SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20156832 chr17:20156834 nonsynonymous SNV 0.229 1 23 hm5C_associated_SNPs_58721 0 0 1 0 2 SPECC1 chr17:20156899 5'GT 20156899 Upstream 66bp
chr8 21840253 21840253 1 + G T ESCA 21840250 + 21840230 21840270 41 AAGCCACAGAGCCCCACATGCTGGAAACTTACACTCCTGAG AAGCCACAGAGCCCCACATGCTGTAAACTTACACTCCTGAG < 41bp 0.899428195593719 0.623659649902401 0.32592052 0.14429325 prediction 0.551537091382637 Functional Loss - XPO7 ENSG00000130227 CDS Human protein_coding chr8:21840250 chr8:21840253 stopgain 0.999 1 24 hm5C_associated_SNPs_58723 0 0 1 0 1 XPO7 chr8:21840323 5'GT 21840323 Upstream 71bp
chr11 124013231 124013231 1 + G T COAD 124013228 + 124013208 124013248 41 GATCTGAATGAAGATCTAGCCAAGATCCTAGGTATGAGTTT GATCTGAATGAAGATCTAGCCAATATCCTAGGTATGAGTTT < 41bp 0.775762439726689 0.408213178633614 0.22055814 0.031051368 prediction 0.551524879453377 Functional Loss - VWA5A ENSG00000110002 CDS Human protein_coding chr11:124013228 chr11:124013231 nonsynonymous SNV 0.014 0 24 hm5C_associated_SNPs_58725 0 0 0 0 2 VWA5A chr11:124013149 3'AG 124013149 Downstream 83bp
chr11 124013231 124013231 1 + G T COAD 124013228 + 124013208 124013248 41 GATCTGAATGAAGATCTAGCCAAGATCCTAGGTATGAGTTT GATCTGAATGAAGATCTAGCCAATATCCTAGGTATGAGTTT < 41bp 0.775762439726689 0.408213178633614 0.22055814 0.031051368 prediction 0.551524879453377 Functional Loss - VWA5A ENSG00000110002 CDS Human protein_coding chr11:124013228 chr11:124013231 nonsynonymous SNV 0.014 0 24 hm5C_associated_SNPs_58725 0 0 0 0 2 VWA5A chr11:124013279 5'GT 124013279 Upstream 49bp
chr9 12708981 12708981 1 + G T CHOL 12708979 + 12708959 12708999 41 ATCTTCCTTTCCAAATAGGTCGGGAGTTTAGTGTACCTGAG ATCTTCCTTTCCAAATAGGTCGTGAGTTTAGTGTACCTGAG < 41bp 0.775725985004379 0.470491645860147 0.8563552 0.2970096 prediction 0.551451970008757 Functional Loss - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12708979 chr9:12708981 synonymous SNV . 0 23 hm5C_associated_SNPs_58730 0 0 0 0 1 TYRP1 chr9:12708977 3'AG 12708977 Downstream 5bp
chr12 52284409 52284409 1 + G T HNSC 52284407 + 52284387 52284427 41 GGACCCTGTTCGGGGCAAGACGGCCCTGGAATGGGCAGTGC GGACCCTGTTCGGGGCAAGACGTCCCTGGAATGGGCAGTGC < 41bp 0.825312308886543 0.549592274107691 0.36012334 0.1950359 prediction 0.551440069557704 Functional Loss - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52284407 chr12:52284409 nonsynonymous SNV 0.986 2 23 hm5C_associated_SNPs_58731 0 0 0 0 1 ANKRD33 chr12:52284368 3'AG 52284368 Downstream 42bp
chr19 15223231 15223231 1 + G T COAD 15223229 + 15223209 15223249 41 CCTACAACCGCATGACCCCACAGAACTTGGCCGTGTGCTTC CCTACAACCGCATGACCCCACATAACTTGGCCGTGTGCTTC < 41bp 0.77568955051072 0.428894613205345 0.19717744 0.097444504 prediction 0.551379101021441 Functional Loss - SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15223229 chr19:15223231 nonsynonymous SNV 0.970 3 23 hm5C_associated_SNPs_58734 0 0 1 0 1 SYDE1 chr19:15223157 3'AG 15223157 Downstream 75bp
chr6 50803961 50803961 1 + C T HNSC 50803959 + 50803939 50803979 41 GGCTGTCGCCCCCTGAATGCCTCAATGCATCTCTCCTCGGC GGCTGTCGCCCCCTGAATGCCTTAATGCATCTCTCCTCGGC < 41bp 0.793497234144341 0.517815724180159 0.76531327 0.1355387 prediction 0.551363019928365 Functional Loss - TFAP2B ENSG00000008196 CDS Human protein_coding chr6:50803959 chr6:50803961 synonymous SNV . 0 23 hm5C_associated_SNPs_58736 0 0 0 0 1 TFAP2B chr6:50803993 5'GT 50803993 Upstream 33bp
chr16 28944245 28944245 1 + G T UCEC 28944243 + 28944223 28944263 41 TCTTCCCAGGGGAGCTGTTCCGGTGGAATGTTTCGGACCTA TCTTCCCAGGGGAGCTGTTCCGTTGGAATGTTTCGGACCTA < 41bp 0.775680203408332 0.429801250170402 0.91685915 0.67493176 prediction 0.551360406816664 Functional Loss - CD19 ENSG00000177455 CDS Human protein_coding chr16:28944243 chr16:28944245 synonymous SNV . 0 23 hm5C_associated_SNPs_58737 0 0 0 0 1 CD19 chr16:28944232 3'AG 28944232 Downstream 14bp
chr18 662237 662237 1 + C T SKCM 662235 + 662215 662255 41 TTTTTGGACAGCCTGGGATTCTCCACCAGAGAAGAAGGGGA TTTTTGGACAGCCTGGGATTCTTCACCAGAGAAGAAGGGGA < 41bp 0.775679520801785 0.489848052937736 0.9496877 0.30069387 prediction 0.551359041603571 Functional Loss - TYMS ENSG00000176890 CDS Human protein_coding chr18:662235 chr18:662237 nonsynonymous SNV 0.530 0 23 hm5C_associated_SNPs_58738 0 0 1 0 2 TYMS chr18:662146 3'AG 662146 Downstream 92bp
chr18 662237 662237 1 + C T SKCM 662235 + 662215 662255 41 TTTTTGGACAGCCTGGGATTCTCCACCAGAGAAGAAGGGGA TTTTTGGACAGCCTGGGATTCTTCACCAGAGAAGAAGGGGA < 41bp 0.775679520801785 0.489848052937736 0.9496877 0.30069387 prediction 0.551359041603571 Functional Loss - TYMS ENSG00000176890 CDS Human protein_coding chr18:662235 chr18:662237 nonsynonymous SNV 0.530 0 23 hm5C_associated_SNPs_58738 0 0 1 0 2 TYMS chr18:662320 5'GT 662320 Upstream 84bp
chr1 172437625 172437625 1 + G T COAD 172437623 + 172437603 172437643 41 AGACTGCCCATTCTGGGCCCCAGGACAGCTGTCTTCCACGG AGACTGCCCATTCTGGGCCCCATGACAGCTGTCTTCCACGG < 41bp 0.855845486303954 0.580168792996465 0.14478415 0.018024087 prediction 0.551353386614978 Functional Loss - C1orf105 ENSG00000180999 CDS Human protein_coding chr1:172437623 chr1:172437625 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_58739 0 0 0 0 1 C1orf105 chr1:172437589 3'AG 172437589 Downstream 37bp
chr4 123301251 123301251 1 + G T LUSC 123301249 + 123301229 123301269 41 CTAGCAACAATCATTGGTTTCAGAGTTCGCAGGTCCCCAGC CTAGCAACAATCATTGGTTTCATAGTTCGCAGGTCCCCAGC < 41bp 0.775675218635584 0.426793846104911 0.8441402 0.06081915 prediction 0.551350437271167 Functional Loss - ADAD1;ADAD1 ENSG00000164113;ENSG00000164113 exonic;splicing Human protein_coding chr4:123301249 chr4:123301251 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_58740 0 0 0 0 1 ADAD1 chr4:123301217 3'AG 123301217 Downstream 35bp
chr12 20876168 20876168 1 + C T rs144285413 20876166 + 20876146 20876186 41 CAGCAGTATGGACAGTCATCCTCCAGGGCCAACTTTGTGAT CAGCAGTATGGACAGTCATCCTTCAGGGCCAACTTTGTGAT < 41bp 0.803672839426992 0.52801695715738 0.9244906 0.0709379 prediction 0.551311764539225 Functional Loss - SLCO1C1 ENSG00000139155 CDS Human protein_coding chr12:20876166 chr12:20876168 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_58743 0 0 0 0 1 SLCO1C1 chr12:20876188 5'GT 20876188 Upstream 21bp
chr7 99048393 99048393 1 + G C LUSC 99048389 + 99048369 99048409 41 AATTACCTCGTGGGATTCTGCCCGGAGGGGCCCTCGTGTAA AATTACCTCGTGGGATTCTGCCCGCAGGGGCCCTCGTGTAA < 41bp 0.77772100579412 0.502100384460664 0.15815735 0.09146762 prediction 0.551241242666912 Functional Loss - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99048389 chr7:99048393 nonsynonymous SNV 0.845 2 25 hm5C_associated_SNPs_58744 0 0 1 0 2 CPSF4 chr7:99048325 3'AG 99048325 Downstream 69bp
chr7 99048393 99048393 1 + G C LUSC 99048389 + 99048369 99048409 41 AATTACCTCGTGGGATTCTGCCCGGAGGGGCCCTCGTGTAA AATTACCTCGTGGGATTCTGCCCGCAGGGGCCCTCGTGTAA < 41bp 0.77772100579412 0.502100384460664 0.15815735 0.09146762 prediction 0.551241242666912 Functional Loss - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99048389 chr7:99048393 nonsynonymous SNV 0.845 2 25 hm5C_associated_SNPs_58744 0 0 1 0 2 CPSF4 chr7:99048418 5'GT 99048418 Upstream 26bp
chr6 35436793 35436793 1 + G T LUSC 35436790 + 35436770 35436810 41 CCCCAGAAGGACAAGCGCTTCTCGGGCACCGTCAGGTTGGC CCCCAGAAGGACAAGCGCTTCTCTGGCACCGTCAGGTTGGC < 41bp 0.775615250987188 0.404920143809123 0.0826247 0.067682475 prediction 0.551230501974377 Functional Loss - RPL10A ENSG00000198755 CDS Human protein_coding chr6:35436790 chr6:35436793 synonymous SNV . 0 24 hm5C_associated_SNPs_58745 0 0 1 0 2 RPL10A chr6:35436724 3'AG 35436724 Downstream 70bp
chr6 35436793 35436793 1 + G T LUSC 35436790 + 35436770 35436810 41 CCCCAGAAGGACAAGCGCTTCTCGGGCACCGTCAGGTTGGC CCCCAGAAGGACAAGCGCTTCTCTGGCACCGTCAGGTTGGC < 41bp 0.775615250987188 0.404920143809123 0.0826247 0.067682475 prediction 0.551230501974377 Functional Loss - RPL10A ENSG00000198755 CDS Human protein_coding chr6:35436790 chr6:35436793 synonymous SNV . 0 24 hm5C_associated_SNPs_58745 0 0 1 0 2 RPL10A chr6:35436804 5'GT 35436804 Upstream 12bp
chr3 42949532 42949532 1 + G C rs557003841 42949528 + 42949508 42949548 41 TTTCAGGAGTCAGTGACCTTCGAGGATGTGGCCGTCTACTT TTTCAGGAGTCAGTGACCTTCGAGCATGTGGCCGTCTACTT < 41bp 0.796132781338911 0.520517542502317 0.8832134 0.2620198 prediction 0.551230477673188 Functional Loss - ZNF662 ENSG00000182983 CDS Human protein_coding chr3:42949528 chr3:42949532 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_58746 0 0 0 0 1 ZNF662 chr3:42949514 3'AG 42949514 Downstream 19bp
chr21 17203752 17203752 1 + C T rs143731450 17203750 + 17203730 17203770 41 GATTACATGCCGTTTTAGTTCACGAAGGCCAAGCTAATGCT GATTACATGCCGTTTTAGTTCATGAAGGCCAAGCTAATGCT < 41bp 0.786513401383683 0.510903213070665 0.19479403 0.12630284 prediction 0.551220376626034 Functional Loss - USP25 ENSG00000155313 CDS Human protein_coding chr21:17203750 chr21:17203752 synonymous SNV . 0 23 hm5C_associated_SNPs_58748 0 0 1 0 1 USP25 chr21:17203720 3'AG 17203720 Downstream 33bp
chr10 129350776 129350776 1 + G T UCEC 129350773 + 129350753 129350793 41 TCTGCTGAACAGCTGCCCAACCAGATTGGACAGGAGCAAAG TCTGCTGAACAGCTGCCCAACCATATTGGACAGGAGCAAAG < 41bp 0.775607895353973 0.401059088308613 0.030414611 0.017631292 prediction 0.551215790707945 Functional Loss - NPS ENSG00000214285 CDS Human protein_coding chr10:129350773 chr10:129350776 nonsynonymous SNV 0.251 2 24 hm5C_associated_SNPs_58749 0 0 0 0 1 NPS chr10:129350724 3'AG 129350724 Downstream 53bp
chr12 21377670 21377670 1 + C T COAD 21377668 + 21377648 21377688 41 TATTACAGGAGGAATTCTAGCTCCAATATATTTTGGGGCTC TATTACAGGAGGAATTCTAGCTTCAATATATTTTGGGGCTC < 41bp 0.784215272045898 0.508620026607399 0.70949054 0.22176191 prediction 0.551190490876999 Functional Loss - SLCO1B1 ENSG00000134538 CDS Human protein_coding chr12:21377668 chr12:21377670 nonsynonymous SNV 0.954 4 23 hm5C_associated_SNPs_58755 0 0 0 0 1 SLCO1B1 chr12:21377656 3'AG 21377656 Downstream 15bp
chr10 90580014 90580014 1 + G T ESCA 90580012 + 90579992 90580032 41 ACTCCTGTAAGGTACAGAGTCAGAGATATGACGGTCCCTAC ACTCCTGTAAGGTACAGAGTCATAGATATGACGGTCCCTAC < 41bp 0.866501735943656 0.590906783462498 0.89802665 0.35587883 prediction 0.551189904962316 Functional Loss - LIPM ENSG00000173239 CDS Human protein_coding chr10:90580012 chr10:90580014 nonsynonymous SNV 0.979 1 23 hm5C_associated_SNPs_58756 0 0 0 0 1 LIPM chr10:90579989 3'AG 90579989 Downstream 26bp
chr13 114294517 114294517 1 + G T LUAD 114294514 + 114294494 114294534 41 GCGGCTCCAGGGTGGAGACTCCGGTGTCCTACGTCGGGGAG GCGGCTCCAGGGTGGAGACTCCGTTGTCCTACGTCGGGGAG < 41bp 0.775588481930501 0.393025775781893 0.9010394 0.2926041 prediction 0.551176963861002 Functional Loss - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114294514 chr13:114294517 nonsynonymous SNV 0.986 3 24 hm5C_associated_SNPs_58758 0 0 1 0 1 TFDP1 chr13:114294435 3'AG 114294435 Downstream 83bp
chr1 11716154 11716154 1 + G T BLCA 11716152 + 11716132 11716172 41 CCTCCTGCACAACCCGTGCGCTGAAGGTGGGGTACAGGCCG CCTCCTGCACAACCCGTGCGCTTAAGGTGGGGTACAGGCCG < 41bp 0.775566008928805 0.443486091355775 0.12801757 0.05823204 prediction 0.551132017857611 Functional Loss - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11716152 chr1:11716154 stopgain 0.944 1 23 hm5C_associated_SNPs_58763 0 0 1 0 1 FBXO44 chr1:11716157 5'GT 11716157 Upstream 4bp
chr17 61564064 61564064 1 + G T UCEC 61564062 + 61564042 61564082 41 AACGGGCAGCACTGCCTGCCCAGGAGCTGGAGGAGGTGTGT AACGGGCAGCACTGCCTGCCCATGAGCTGGAGGAGGTGTGT < 41bp 0.858607833305064 0.583058158529386 0.8305584 0.24610677 prediction 0.551099349551356 Functional Loss - ACE ENSG00000159640;ENSG00000264813 CDS Human other chr17:61564062 chr17:61564064 nonsynonymous SNV 0.099 1 23 hm5C_associated_SNPs_58765 0 0 0 0 1 ACE chr17:61564076 5'GT 61564076 Upstream 13bp
chr19 45975914 45975914 1 + G T STAD 45975911 + 45975891 45975931 41 TTGTGCTGGTGGCCCACAAACCGGGCTGCAAGATCCCCTAC TTGTGCTGGTGGCCCACAAACCGTGCTGCAAGATCCCCTAC < 41bp 0.899218539911371 0.623677291857112 0.9063016 0.40282983 prediction 0.551082496108518 Functional Loss - FOSB ENSG00000125740 CDS Human protein_coding chr19:45975911 chr19:45975914 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_58766 0 0 0 0 1 FOSB chr19:45975964 5'GT 45975964 Upstream 51bp
chr11 67376963 67376963 1 + G T STAD 67376961 + 67376941 67376981 41 GAACGCAGACGAGGGGGAGCCGGGCACCTGCAAGGACCGGG GAACGCAGACGAGGGGGAGCCGTGCACCTGCAAGGACCGGG < 41bp 0.775519772251554 0.428767330607297 0.8276087 0.29976463 prediction 0.551039544503109 Functional Loss - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67376961 chr11:67376963 nonsynonymous SNV 0.987 5 23 hm5C_associated_SNPs_58768 0 0 1 0 1 NDUFV1 chr11:67376923 3'AG 67376923 Downstream 41bp
chr8 145066735 145066735 1 + G T THYM 145066732 + 145066712 145066752 41 TCTTCATCCGGAACCGCATCCTGGAGATCGTGTACGCCTCA TCTTCATCCGGAACCGCATCCTGTAGATCGTGTACGCCTCA < 41bp 0.897734308407227 0.622217320015648 0.3217647 0.14192787 prediction 0.551033976783159 Functional Loss - GRINA ENSG00000178719 CDS Human protein_coding chr8:145066732 chr8:145066735 stopgain 0.997 1 24 hm5C_associated_SNPs_58769 0 0 1 0 1 GRINA chr8:145066776 5'GT 145066776 Upstream 42bp
chr1 109756738 109756738 1 + G C BLCA 109756737 + 109756717 109756757 41 CAGCTGGTGAAGGCAGACAGCGAGTGGCGACGATGTAAGTA CAGCTGGTGAAGGCAGACAGCCAGTGGCGACGATGTAAGTA < 41bp 0.775506870574237 0.492504563888064 0.69245464 0.35281897 prediction 0.551013741148473 Functional Loss - SARS ENSG00000031698 CDS Human protein_coding chr1:109756737 chr1:109756738 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_58774 0 0 1 0 1 SARS chr1:109756750 5'GT 109756750 Upstream 13bp
chr12 111082930 111082930 1 + G T UCEC 111082928 + 111082908 111082948 41 TTCATCACCCAGTCATTCAACAGGAAGGTAAAGGGGAGAAG TTCATCACCCAGTCATTCAACATGAAGGTAAAGGGGAGAAG < 41bp 0.850608672123774 0.57514547653958 0.25846666 0.07251018 prediction 0.550926391168388 Functional Loss - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111082928 chr12:111082930 nonsynonymous SNV 0.242 0 23 hm5C_associated_SNPs_58778 0 0 0 1 1 TCTN1 chr12:111082934 5'GT 111082934 Upstream 5bp
chr10 129868053 129868053 1 + C T UCEC 129868051 + 129868031 129868071 41 GGATGTGTTTGAATTTGTGTCTCGAATCCGTAATCAGCGCC GGATGTGTTTGAATTTGTGTCTTGAATCCGTAATCAGCGCC < 41bp 0.775457743329943 0.49853076961856 0.612267 0.103889614 prediction 0.550915486659886 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129868051 chr10:129868053 stopgain 0.658 1 23 hm5C_associated_SNPs_58779 0 0 0 0 2 PTPRE chr10:129867956 3'AG 129867956 Downstream 98bp
chr10 129868053 129868053 1 + C T UCEC 129868051 + 129868031 129868071 41 GGATGTGTTTGAATTTGTGTCTCGAATCCGTAATCAGCGCC GGATGTGTTTGAATTTGTGTCTTGAATCCGTAATCAGCGCC < 41bp 0.775457743329943 0.49853076961856 0.612267 0.103889614 prediction 0.550915486659886 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129868051 chr10:129868053 stopgain 0.658 1 23 hm5C_associated_SNPs_58779 0 0 0 0 2 PTPRE chr10:129868091 5'GT 129868091 Upstream 39bp
chr4 651194 651194 1 + A C SKCM 651190 + 651170 651210 41 ATGAACACCGACACCTACGACAAGATGAACAAGCTGGAGAA ATGAACACCGACACCTACGACAAGCTGAACAAGCTGGAGAA < 41bp 0.775426290509935 0.363514366954834 0.81411064 0.8543836 prediction 0.550852581019871 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:651190 chr4:651194 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_58783 0 0 0 0 2 PDE6B chr4:651140 3'AG 651140 Downstream 55bp
chr4 651194 651194 1 + A C SKCM 651190 + 651170 651210 41 ATGAACACCGACACCTACGACAAGATGAACAAGCTGGAGAA ATGAACACCGACACCTACGACAAGCTGAACAAGCTGGAGAA < 41bp 0.775426290509935 0.363514366954834 0.81411064 0.8543836 prediction 0.550852581019871 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:651190 chr4:651194 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_58783 0 0 0 0 2 PDE6B chr4:651283 5'GT 651283 Upstream 90bp
chr16 55608556 55608556 1 + G T LUAD 55608554 + 55608534 55608574 41 CTTTCACAGAACCATGATGGCAGCATTGACTTCCGAGAGTA CTTTCACAGAACCATGATGGCATCATTGACTTCCGAGAGTA < 41bp 0.852202360633929 0.576794061064648 0.16350955 0.1314894 prediction 0.550816599138562 Functional Loss - LPCAT2 ENSG00000087253 CDS Human protein_coding chr16:55608554 chr16:55608556 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_58786 0 0 0 0 2 LPCAT2 chr16:55608543 3'AG 55608543 Downstream 14bp
chr16 55608556 55608556 1 + G T LUAD 55608554 + 55608534 55608574 41 CTTTCACAGAACCATGATGGCAGCATTGACTTCCGAGAGTA CTTTCACAGAACCATGATGGCATCATTGACTTCCGAGAGTA < 41bp 0.852202360633929 0.576794061064648 0.16350955 0.1314894 prediction 0.550816599138562 Functional Loss - LPCAT2 ENSG00000087253 CDS Human protein_coding chr16:55608554 chr16:55608556 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_58786 0 0 0 0 2 LPCAT2 chr16:55608641 5'GT 55608641 Upstream 86bp
chr9 138439045 138439045 1 + G T UCEC 138439042 + 138439022 138439062 41 AGGAGGGAGGATCGGTGCATCCAGAAGAAAATCCTGATGCG AGGAGGGAGGATCGGTGCATCCATAAGAAAATCCTGATGCG < 41bp 0.775405283796286 0.394375459832701 0.43858144 0.095422 prediction 0.550810567592571 Functional Loss - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138439042 chr9:138439045 stopgain 0.000 3 24 hm5C_associated_SNPs_58787 0 0 0 0 2 OBP2A chr9:138439024 3'AG 138439024 Downstream 22bp
chr9 138439045 138439045 1 + G T UCEC 138439042 + 138439022 138439062 41 AGGAGGGAGGATCGGTGCATCCAGAAGAAAATCCTGATGCG AGGAGGGAGGATCGGTGCATCCATAAGAAAATCCTGATGCG < 41bp 0.775405283796286 0.394375459832701 0.43858144 0.095422 prediction 0.550810567592571 Functional Loss - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138439042 chr9:138439045 stopgain 0.000 3 24 hm5C_associated_SNPs_58787 0 0 0 0 2 OBP2A chr9:138439094 5'GT 138439094 Upstream 50bp
chr17 78091470 78091470 1 + G T UCEC 78091467 + 78091447 78091487 41 CGTGAGCCAGCCATCCACAGCGAGGGGCAGTGGGTGACGCT CGTGAGCCAGCCATCCACAGCGATGGGCAGTGGGTGACGCT < 41bp 0.775404647535568 0.381582474603962 0.9016042 0.3979305 prediction 0.550809295071136 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78091467 chr17:78091470 nonsynonymous SNV 0.950 1 24 hm5C_associated_SNPs_58788 0 0 1 0 2 GAA chr17:78091399 3'AG 78091399 Downstream 72bp
chr17 78091470 78091470 1 + G T UCEC 78091467 + 78091447 78091487 41 CGTGAGCCAGCCATCCACAGCGAGGGGCAGTGGGTGACGCT CGTGAGCCAGCCATCCACAGCGATGGGCAGTGGGTGACGCT < 41bp 0.775404647535568 0.381582474603962 0.9016042 0.3979305 prediction 0.550809295071136 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78091467 chr17:78091470 nonsynonymous SNV 0.950 1 24 hm5C_associated_SNPs_58788 0 0 1 0 2 GAA chr17:78091548 5'GT 78091548 Upstream 79bp
chr12 64173835 64173835 1 + G C LUAD 64173834 + 64173814 64173854 41 ACCACGTCTTCTTCGGGCGCCGCCGCCAGGCGCCGGCCGGG ACCACGTCTTCTTCGGGCGCCCCCGCCAGGCGCCGGCCGGG < 41bp 0.775404636213418 0.481641224882419 0.8530375 0.34437448 prediction 0.550809272426835 Functional Loss - TMEM5 ENSG00000118600 CDS Human protein_coding chr12:64173834 chr12:64173835 nonsynonymous SNV 0.882 2 22 hm5C_associated_SNPs_58789 0 0 1 0 1 TMEM5 chr12:64173909 5'GT 64173909 Upstream 75bp
chr7 150747659 150747659 1 + G T UCEC 150747657 + 150747637 150747677 41 AGCTGGGCTTGGGGGTGTCCCCGGGCTACCAGACCTTTGTT AGCTGGGCTTGGGGGTGTCCCCTGGCTACCAGACCTTTGTT < 41bp 0.775399616176857 0.423880959926455 0.9112483 0.30119812 prediction 0.550799232353715 Functional Loss - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150747657 chr7:150747659 synonymous SNV . 0 23 hm5C_associated_SNPs_58790 0 0 0 0 2 ASIC3 chr7:150747568 3'AG 150747568 Downstream 92bp
chr7 150747659 150747659 1 + G T UCEC 150747657 + 150747637 150747677 41 AGCTGGGCTTGGGGGTGTCCCCGGGCTACCAGACCTTTGTT AGCTGGGCTTGGGGGTGTCCCCTGGCTACCAGACCTTTGTT < 41bp 0.775399616176857 0.423880959926455 0.9112483 0.30119812 prediction 0.550799232353715 Functional Loss - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150747657 chr7:150747659 synonymous SNV . 0 23 hm5C_associated_SNPs_58790 0 0 0 0 2 ASIC3 chr7:150747695 5'GT 150747695 Upstream 37bp
chr8 1624761 1624761 1 + G T LUAD 1624758 + 1624738 1624778 41 CTGCGGGAATACCACTCTGTCGGGGTGCAAGTGGAAGATGA CTGCGGGAATACCACTCTGTCGGTGTGCAAGTGGAAGATGA < 41bp 0.775386362707563 0.388137669042597 0.92173046 0.49589816 prediction 0.550772725415125 Functional Loss - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1624758 chr8:1624761 synonymous SNV . 0 24 hm5C_associated_SNPs_58792 0 0 0 0 2 DLGAP2 chr8:1624699 3'AG 1624699 Downstream 63bp
chr8 1624761 1624761 1 + G T LUAD 1624758 + 1624738 1624778 41 CTGCGGGAATACCACTCTGTCGGGGTGCAAGTGGAAGATGA CTGCGGGAATACCACTCTGTCGGTGTGCAAGTGGAAGATGA < 41bp 0.775386362707563 0.388137669042597 0.92173046 0.49589816 prediction 0.550772725415125 Functional Loss - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1624758 chr8:1624761 synonymous SNV . 0 24 hm5C_associated_SNPs_58792 0 0 0 0 2 DLGAP2 chr8:1624784 5'GT 1624784 Upstream 24bp
chr10 127429072 127429072 1 + A C STAD 127429068 + 127429048 127429088 41 GGGCAATTATTCCAGTCAATCTGGAATGATCCCTGGCTCTT GGGCAATTATTCCAGTCAATCTGGCATGATCCCTGGCTCTT < 41bp 0.911739563916066 0.63636222017685 0.8989236 0.4002204 prediction 0.550754687478433 Functional Loss - EDRF1 ENSG00000107938 CDS Human protein_coding chr10:127429068 chr10:127429072 synonymous SNV . 0 25 hm5C_associated_SNPs_58793 0 0 1 0 1 EDRF1 chr10:127429032 3'AG 127429032 Downstream 41bp
chr22 31672785 31672785 1 + G C STAD 31672784 + 31672764 31672804 41 TCTACTTTCAGAGCCCCCCCCGGGGCCGCAGGAGAGGGCCC TCTACTTTCAGAGCCCCCCCCCGGGCCGCAGGAGAGGGCCC < 41bp 0.829972808012811 0.554596721971307 0.9097697 0.26914936 prediction 0.550752172083009 Functional Loss - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31672784 chr22:31672785 nonsynonymous SNV 0.011 2 22 hm5C_associated_SNPs_58794 0 0 1 0 1 LIMK2 chr22:31672775 3'AG 31672775 Downstream 11bp
chr19 1226530 1226530 1 + G T ESCA 1226528 + 1226508 1226548 41 GGCCGTGTGTATGAACGGCACAGAGGCGGCGCAGCTGAGCA GGCCGTGTGTATGAACGGCACATAGGCGGCGCAGCTGAGCA < 41bp 0.775372482472308 0.43514888667096 0.15708572 0.08410421 prediction 0.550744964944617 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1226528 chr19:1226530 stopgain 0.163 1 23 hm5C_associated_SNPs_58795 0 0 1 0 1 STK11 chr19:1226453 3'AG 1226453 Downstream 78bp
chr1 201263122 201263122 1 + G T LUAD 201263119 + 201263099 201263139 41 TACAACTATGGGACCACCAGCAGGAGCAGCTACTACTCCAA TACAACTATGGGACCACCAGCAGTAGCAGCTACTACTCCAA < 41bp 0.775370311484436 0.376220346535069 0.93276095 0.44598934 prediction 0.550740622968872 Functional Loss - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201263119 chr1:201263122 nonsynonymous SNV 0.955 2 24 hm5C_associated_SNPs_58796 0 0 0 0 2 PKP1 chr1:201263070 3'AG 201263070 Downstream 53bp
chr1 201263122 201263122 1 + G T LUAD 201263119 + 201263099 201263139 41 TACAACTATGGGACCACCAGCAGGAGCAGCTACTACTCCAA TACAACTATGGGACCACCAGCAGTAGCAGCTACTACTCCAA < 41bp 0.775370311484436 0.376220346535069 0.93276095 0.44598934 prediction 0.550740622968872 Functional Loss - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201263119 chr1:201263122 nonsynonymous SNV 0.955 2 24 hm5C_associated_SNPs_58796 0 0 0 0 2 PKP1 chr1:201263173 5'GT 201263173 Upstream 52bp
chr10 104161572 104161572 1 + G T COAD 104161570 + 104161550 104161590 41 TGCTAGACGGGCCAGAAGCCCAGGGCAGCTGGGCAGAGCTG TGCTAGACGGGCCAGAAGCCCATGGCAGCTGGGCAGAGCTG < 41bp 0.775369498776361 0.433065728813308 0.89591455 0.4994537 prediction 0.550738997552722 Functional Loss - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104161570 chr10:104161572 nonsynonymous SNV 0.987 1 23 hm5C_associated_SNPs_58797 0 0 0 0 1 NFKB2 chr10:104161502 3'AG 104161502 Downstream 71bp
chr1 26510958 26510958 1 + G T LUAD 26510955 + 26510935 26510975 41 ACCCCCAGCCATACTCCCAGCAGGGGTAGCAGGGACTCCAG ACCCCCAGCCATACTCCCAGCAGTGGTAGCAGGGACTCCAG < 41bp 0.907445379020197 0.632076563471242 0.9210961 0.39634782 prediction 0.55073763109791 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26510955 chr1:26510958 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_58798 0 0 0 0 2 CNKSR1 chr1:26510892 3'AG 26510892 Downstream 67bp
chr1 26510958 26510958 1 + G T LUAD 26510955 + 26510935 26510975 41 ACCCCCAGCCATACTCCCAGCAGGGGTAGCAGGGACTCCAG ACCCCCAGCCATACTCCCAGCAGTGGTAGCAGGGACTCCAG < 41bp 0.907445379020197 0.632076563471242 0.9210961 0.39634782 prediction 0.55073763109791 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26510955 chr1:26510958 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_58798 0 0 0 0 2 CNKSR1 chr1:26510998 5'GT 26510998 Upstream 41bp
chrX 101381408 101381408 1 + A C rs12008002 101381404 + 101381384 101381424 41 AAAAGGAAGAGCAACCTGTCCAGAATCCCCGCAGGTCCGTG AAAAGGAAGAGCAACCTGTCCAGACTCCCCGCAGGTCCGTG < 41bp 0.775366889797139 0.477924448869622 0.15831068 0.13664535 prediction 0.550733779594278 Functional Loss - TCEAL2 ENSG00000184905 UTR5 Human protein_coding chrX:101381404 chrX:101381408 . . 0 25 hm5C_associated_SNPs_58799 0 0 0 0 2 TCEAL2 chrX:101381345 3'AG 101381345 Downstream 64bp
chrX 101381408 101381408 1 + A C rs12008002 101381404 + 101381384 101381424 41 AAAAGGAAGAGCAACCTGTCCAGAATCCCCGCAGGTCCGTG AAAAGGAAGAGCAACCTGTCCAGACTCCCCGCAGGTCCGTG < 41bp 0.775366889797139 0.477924448869622 0.15831068 0.13664535 prediction 0.550733779594278 Functional Loss - TCEAL2 ENSG00000184905 UTR5 Human protein_coding chrX:101381404 chrX:101381408 . . 0 25 hm5C_associated_SNPs_58799 0 0 0 0 2 TCEAL2 chrX:101381417 5'GT 101381417 Upstream 10bp
chr9 40702713 40702713 1 + G T PAAD 40702711 + 40702691 40702731 41 GCTCTCCGGTCCAGACCCCCCAGGTGAGGTGGGCGAAAGAG GCTCTCCGGTCCAGACCCCCCATGTGAGGTGGGCGAAAGAG < 41bp 0.775363606433468 0.434826249383903 0.5101457 0.1516603 prediction 0.550727212866936 Functional Loss - SPATA31A3 ENSG00000147926 CDS Human other chr9:40702711 chr9:40702713 nonsynonymous SNV 0.057 2 23 hm5C_associated_SNPs_58800 0 0 0 0 1 SPATA31A3 chr9:40702652 3'AG 40702652 Downstream 62bp
chr17 32647919 32647919 1 + A C STAD 32647915 + 32647895 32647935 41 TGGACCAAATATTTCAAAATCTGAAGCCATGAGCCTTCATA TGGACCAAATATTTCAAAATCTGACGCCATGAGCCTTCATA < 41bp 0.775302445910772 0.394594468060867 0.04828027 0.014623582 prediction 0.550604891821543 Functional Loss - CCL8 ENSG00000108700 CDS Human protein_coding chr17:32647915 chr17:32647919 nonsynonymous SNV 0.011 1 25 hm5C_associated_SNPs_58808 0 0 0 0 1 CCL8 chr17:32647821 3'AG 32647821 Downstream 99bp
chr1 32092400 32092400 1 + G T LIHC 32092398 + 32092378 32092418 41 TCTCCCAACCAAGGCAAATTCCGGGAGCAGTTTAAGGCTGC TCTCCCAACCAAGGCAAATTCCTGGAGCAGTTTAAGGCTGC < 41bp 0.775296069315496 0.451070888270345 0.9142282 0.3812735 prediction 0.550592138630992 Functional Loss - HCRTR1 ENSG00000121764 CDS Human protein_coding chr1:32092398 chr1:32092400 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_58809 0 0 0 0 1 HCRTR1 chr1:32092391 3'AG 32092391 Downstream 10bp
chr11 125300002 125300002 1 + A T STAD 125299998 + 125299978 125300018 41 ACTCCATCGCTGCGGGGGTGCTGCAGCAGCAGGGCGGTGCC ACTCCATCGCTGCGGGGGTGCTGCTGCAGCAGGGCGGTGCC < 41bp 0.857737932131212 0.582465836462187 0.89832795 0.8492186 prediction 0.550544191338052 Functional Loss - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125299998 chr11:125300002 nonsynonymous SNV 0.970 4 25 hm5C_associated_SNPs_58813 0 0 0 0 1 PKNOX2 chr11:125300037 5'GT 125300037 Upstream 36bp
chr9 15846800 15846800 1 + A T UCEC 15846796 + 15846776 15846816 41 TGGAGCAGGACAAGCGTCGACTGGAGGAGAACATCCATGAT TGGAGCAGGACAAGCGTCGACTGGTGGAGAACATCCATGAT < 41bp 0.826680344109674 0.551409809829804 0.5370783 0.36677876 prediction 0.550541068559739 Functional Loss - CCDC171 ENSG00000164989 CDS Human protein_coding chr9:15846796 chr9:15846800 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_58814 0 0 0 0 1 CCDC171 chr9:15846845 5'GT 15846845 Upstream 46bp
chr9 117086070 117086070 1 + G C CESC 117086066 + 117086046 117086086 41 AGACAGAGGACACGATCTTTCTCAGAGAGTACCAGACCCGG AGACAGAGGACACGATCTTTCTCACAGAGTACCAGACCCGG < 41bp 0.801481585594186 0.526212093478831 0.10658339 0.14524993 prediction 0.550538984230711 Functional Loss - ORM1 ENSG00000229314 CDS Human protein_coding chr9:117086066 chr9:117086070 nonsynonymous SNV 0.003 3 25 hm5C_associated_SNPs_58815 0 0 1 0 1 ORM1 chr9:117086085 5'GT 117086085 Upstream 16bp
chr5 148687115 148687115 1 + G C LIHC 148687114 + 148687094 148687134 41 GGATATGTGCCTTCCTGCTGCGGAAAAAGCGTTTCGGGCAG GGATATGTGCCTTCCTGCTGCCGAAAAAGCGTTTCGGGCAG < 41bp 0.83026808615027 0.555003029449296 0.5951015 0.21600652 prediction 0.550530113401947 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148687114 chr5:148687115 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_58816 0 0 0 0 1 AFAP1L1 chr5:148687176 5'GT 148687176 Upstream 62bp
chr8 67047258 67047258 1 + G T LUSC 67047255 + 67047235 67047275 41 AAATCCGACCAGCCCATGTGCGAGGAACATGAAGAGGAGCG AAATCCGACCAGCCCATGTGCGATGAACATGAAGAGGAGCG < 41bp 0.775237074401808 0.380318455846449 0.74223685 0.2090528 prediction 0.550474148803616 Functional Loss - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67047255 chr8:67047258 nonsynonymous SNV 0.978 1 24 hm5C_associated_SNPs_58821 0 0 0 0 1 TRIM55 chr8:67047225 3'AG 67047225 Downstream 34bp
chr3 32200390 32200390 1 + G T LUSC 32200387 + 32200367 32200407 41 GAACATCGTAGCTGTGGGAGCTGGGTTCTGCGACGGCCTCC GAACATCGTAGCTGTGGGAGCTGTGTTCTGCGACGGCCTCC < 41bp 0.907444863318088 0.632214911092525 0.77072513 0.24305317 prediction 0.550459904451127 Functional Loss - GPD1L ENSG00000152642 CDS Human protein_coding chr3:32200387 chr3:32200390 nonsynonymous SNV 0.934 5 24 hm5C_associated_SNPs_58822 0 0 0 0 1 GPD1L chr3:32200368 3'AG 32200368 Downstream 23bp
chr1 150235700 150235700 1 + G T SKCM 150235698 + 150235678 150235718 41 CCCACGCTTCTGCTCCTCAGCTGGAAAAGCTTCAGGGGACA CCCACGCTTCTGCTCCTCAGCTTGAAAAGCTTCAGGGGACA < 41bp 0.85398204001299 0.578752953089076 0.20038298 0.09026086 prediction 0.550458173847827 Functional Loss - CA14 ENSG00000118298 CDS Human protein_coding chr1:150235698 chr1:150235700 synonymous SNV . 0 23 hm5C_associated_SNPs_58823 0 0 0 0 1 CA14 chr1:150235698 3'AG 150235698 Downstream 3bp
chr8 68049816 68049816 1 + G T LUSC 68049813 + 68049793 68049833 41 GGTGGAGGTGGTGCTCCTCTCAGGGATGCAAAAGGAAATCT GGTGGAGGTGGTGCTCCTCTCAGTGATGCAAAAGGAAATCT < 41bp 0.893869654839372 0.618641926850934 0.91493213 0.6384464 prediction 0.550455455976876 Functional Loss - CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68049813 chr8:68049816 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_58824 0 0 1 3 1 CSPP1 chr8:68049838 5'GT 68049838 Upstream 23bp
chrX 118540486 118540486 1 + G C LUSC 118540482 + 118540462 118540502 41 CCAGTGGAGCTCCATCATGGCTGGGAGTCTCGCAGGCATGG CCAGTGGAGCTCCATCATGGCTGGCAGTCTCGCAGGCATGG < 41bp 0.775227202514793 0.487636623249825 0.32792938 0.085751146 prediction 0.550454405029586 Functional Loss - SLC25A43 ENSG00000077713 CDS Human protein_coding chrX:118540482 chrX:118540486 synonymous SNV . 0 25 hm5C_associated_SNPs_58825 0 0 0 0 1 SLC25A43 chrX:118540423 3'AG 118540423 Downstream 64bp
chr8 120429171 120429171 1 + G C KIRP 120429170 + 120429150 120429190 41 GCAGTGGCCTCTACTGTGATCGCAGCGCGGACCCCAGCAAC GCAGTGGCCTCTACTGTGATCCCAGCGCGGACCCCAGCAAC < 41bp 0.837061825179799 0.561866055509558 0.370872 0.19045877 prediction 0.550391539340482 Functional Loss - NOV ENSG00000136999 CDS Human protein_coding chr8:120429170 chr8:120429171 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_58828 0 0 0 0 1 NOV chr8:120429209 5'GT 120429209 Upstream 39bp
chr17 31323950 31323950 1 + A C STAD 31323946 + 31323926 31323966 41 AGCACCAACAACGGGATCTTCCAGATCAACAGCCGGAGGTG AGCACCAACAACGGGATCTTCCAGCTCAACAGCCGGAGGTG < 41bp 0.775194117765611 0.373913401514748 0.44723156 0.4233861 prediction 0.550388235531221 Functional Loss - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31323946 chr17:31323950 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_58829 0 0 0 0 2 SPACA3 chr17:31323861 3'AG 31323861 Downstream 90bp
chr17 31323950 31323950 1 + A C STAD 31323946 + 31323926 31323966 41 AGCACCAACAACGGGATCTTCCAGATCAACAGCCGGAGGTG AGCACCAACAACGGGATCTTCCAGCTCAACAGCCGGAGGTG < 41bp 0.775194117765611 0.373913401514748 0.44723156 0.4233861 prediction 0.550388235531221 Functional Loss - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31323946 chr17:31323950 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_58829 0 0 0 0 2 SPACA3 chr17:31324019 5'GT 31324019 Upstream 70bp
chr1 10035759 10035759 1 + G T COAD 10035756 + 10035736 10035776 41 ATCATGGCAGAACTTGCTACCAAGAATTCTAAATGGGTGGA ATCATGGCAGAACTTGCTACCAATAATTCTAAATGGGTGGA < 41bp 0.77517419627252 0.397415437836737 0.6763652 0.22313985 prediction 0.550348392545039 Functional Loss - NMNAT1 ENSG00000173614 CDS Human protein_coding chr1:10035756 chr1:10035759 nonsynonymous SNV 0.035 1 24 hm5C_associated_SNPs_58834 0 0 0 0 1 NMNAT1 chr1:10035833 5'GT 10035833 Upstream 75bp
chr19 47861194 47861194 1 + G T LUSC 47861192 + 47861172 47861212 41 AGCTGGACCCGCGGCCTTTCCTGAGGGTGCTGGAGTCCATT AGCTGGACCCGCGGCCTTTCCTTAGGGTGCTGGAGTCCATT < 41bp 0.775165631471583 0.42946132389137 0.89812416 0.24942467 prediction 0.550331262943166 Functional Loss - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47861192 chr19:47861194 synonymous SNV . 0 23 hm5C_associated_SNPs_58836 0 0 1 0 1 DHX34 chr19:47861123 3'AG 47861123 Downstream 72bp
chr1 87040429 87040429 1 + A T SKCM 87040425 + 87040405 87040445 41 AATGGCCTATCTCAGTATTCCAGGAACTGCAAAGGTAAGCA AATGGCCTATCTCAGTATTCCAGGTACTGCAAAGGTAAGCA < 41bp 0.822085819787936 0.546949869009854 0.8290202 0.45667046 prediction 0.550271901556163 Functional Loss - CLCA4 ENSG00000016602 CDS Human protein_coding chr1:87040425 chr1:87040429 synonymous SNV . 0 25 hm5C_associated_SNPs_58839 0 0 0 0 1 CLCA4 chr1:87040438 5'GT 87040438 Upstream 10bp
chr2 12858703 12858703 1 + G T SARC 12858700 + 12858680 12858720 41 AGCGGAGAGGAGCTGGTGTGCAAGGTAAAGGGCCAGTGGGT AGCGGAGAGGAGCTGGTGTGCAATGTAAAGGGCCAGTGGGT < 41bp 0.775133272161131 0.385110915386715 0.8839698 0.27352425 prediction 0.550266544322263 Functional Loss - TRIB2 ENSG00000071575 CDS Human protein_coding chr2:12858700 chr2:12858703 nonsynonymous SNV 0.965 2 24 hm5C_associated_SNPs_58840 0 0 1 0 1 TRIB2 chr2:12858703 5'GT 12858703 Upstream 1bp
chr9 34647934 34647934 1 + G T LUSC 34647932 + 34647912 34647952 41 GGGCCTCAGTCACAGAGGAGCTGGGTGCCCAGTACCCTTGG GGGCCTCAGTCACAGAGGAGCTTGGTGCCCAGTACCCTTGG < 41bp 0.874606253462711 0.599493570158595 0.88706124 0.41499782 prediction 0.550225366608233 Functional Loss - GALT ENSG00000213930 CDS Human protein_coding chr9:34647932 chr9:34647934 synonymous SNV . 0 23 hm5C_associated_SNPs_58841 0 0 1 0 1 GALT chr9:34647958 5'GT 34647958 Upstream 25bp
chrX 153669987 153669987 1 + G T SARC 153669985 + 153669965 153670005 41 CTCAGGTGGCCCGCTGCAAGCAGCTGATCTGTGACCCCAGC CTCAGGTGGCCCGCTGCAAGCATCTGATCTGTGACCCCAGC < 41bp 0.782867065405144 0.507758791414336 0.8904219 0.10773912 prediction 0.550216547981617 Functional Loss - GDI1 ENSG00000203879 CDS Human protein_coding chrX:153669985 chrX:153669987 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_58842 0 0 1 0 1 GDI1 chrX:153669970 3'AG 153669970 Downstream 18bp
chr8 62212786 62212786 1 + G T UCEC 62212783 + 62212763 62212803 41 TCCCCGGGGTGCTGGAAAACCGAGACCATTACGGCAGGAAG TCCCCGGGGTGCTGGAAAACCGATACCATTACGGCAGGAAG < 41bp 0.892453430437738 0.617345169253757 0.6774921 0.11758688 prediction 0.550216522367963 Functional Loss - CLVS1 ENSG00000177182 CDS Human protein_coding chr8:62212783 chr8:62212786 nonsynonymous SNV 0.993 5 24 hm5C_associated_SNPs_58843 0 0 0 0 1 CLVS1 chr8:62212841 5'GT 62212841 Upstream 56bp
chr3 37070325 37070325 1 + G T LUSC 37070322 + 37070302 37070342 41 GGAAATGGTGGAAGATGATTCCCGAAAGGAAATGACTGCAG GGAAATGGTGGAAGATGATTCCCTAAAGGAAATGACTGCAG < 41bp 0.847161679495299 0.572077766919323 0.15869623 0.10781926 prediction 0.550167825151952 Functional Loss - MLH1 ENSG00000076242 CDS Human protein_coding chr3:37070322 chr3:37070325 nonsynonymous SNV 0.955 1 24 hm5C_associated_SNPs_58847 1 0 1 0 1 MLH1 chr3:37070275 3'AG 37070275 Downstream 51bp
chr1 116939235 116939235 1 + G T COAD 116939233 + 116939213 116939253 41 ATTACAGGTCATCATGGTCACAGGAGACCATCCAATCACAG ATTACAGGTCATCATGGTCACATGAGACCATCCAATCACAG < 41bp 0.775083887416529 0.433807895358462 0.22768065 0.03804809 prediction 0.550167774833058 Functional Loss - ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116939233 chr1:116939235 stopgain 0.995 1 23 hm5C_associated_SNPs_58848 0 0 1 0 1 ATP1A1 chr1:116939220 3'AG 116939220 Downstream 16bp
chr6 41751967 41751967 1 + G T UCEC 41751965 + 41751945 41751985 41 TCCTGCAGCAACTCCCTCCGCAGGACATTGATGTGGGTCTC TCCTGCAGCAACTCCCTCCGCATGACATTGATGTGGGTCTC < 41bp 0.863665453161041 0.588598364789679 0.41664854 0.17300665 prediction 0.550134176742724 Functional Loss - PRICKLE4 ENSG00000124593 CDS Human protein_coding chr6:41751965 chr6:41751967 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_58856 0 0 1 0 2 PRICKLE4 chr6:41751869 3'AG 41751869 Downstream 99bp
chr6 41751967 41751967 1 + G T UCEC 41751965 + 41751945 41751985 41 TCCTGCAGCAACTCCCTCCGCAGGACATTGATGTGGGTCTC TCCTGCAGCAACTCCCTCCGCATGACATTGATGTGGGTCTC < 41bp 0.863665453161041 0.588598364789679 0.41664854 0.17300665 prediction 0.550134176742724 Functional Loss - PRICKLE4 ENSG00000124593 CDS Human protein_coding chr6:41751965 chr6:41751967 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_58856 0 0 1 0 2 PRICKLE4 chr6:41751976 5'GT 41751976 Upstream 10bp
chr22 31669471 31669471 1 + C T SKCM 31669469 + 31669449 31669489 41 GATGAGACGGTGGATATCTTCTCCTTTGGGATCGTTCTCTG GATGAGACGGTGGATATCTTCTTCTTTGGGATCGTTCTCTG < 41bp 0.775056380063158 0.480273775696557 0.21748233 0.15126282 prediction 0.550112760126316 Functional Loss - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31669469 chr22:31669471 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_58860 0 0 1 0 2 LIMK2 chr22:31669438 3'AG 31669438 Downstream 34bp
chr22 31669471 31669471 1 + C T SKCM 31669469 + 31669449 31669489 41 GATGAGACGGTGGATATCTTCTCCTTTGGGATCGTTCTCTG GATGAGACGGTGGATATCTTCTTCTTTGGGATCGTTCTCTG < 41bp 0.775056380063158 0.480273775696557 0.21748233 0.15126282 prediction 0.550112760126316 Functional Loss - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31669469 chr22:31669471 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_58860 0 0 1 0 2 LIMK2 chr22:31669493 5'GT 31669493 Upstream 23bp
chr3 121836935 121836935 1 + G T UCEC 121836932 + 121836912 121836952 41 AGGGAAGAGAGTGAACAGACCAAGAAAAGGTAAATCCTGAC AGGGAAGAGAGTGAACAGACCAATAAAAGGTAAATCCTGAC < 41bp 0.775052513575747 0.413898676866197 0.4647891 0.3653283 prediction 0.550105027151494 Functional Loss - CD86 ENSG00000114013 CDS Human protein_coding chr3:121836932 chr3:121836935 nonsynonymous SNV 0.010 0 24 hm5C_associated_SNPs_58861 0 0 0 0 2 CD86 chr3:121836895 3'AG 121836895 Downstream 41bp
chr3 121836935 121836935 1 + G T UCEC 121836932 + 121836912 121836952 41 AGGGAAGAGAGTGAACAGACCAAGAAAAGGTAAATCCTGAC AGGGAAGAGAGTGAACAGACCAATAAAAGGTAAATCCTGAC < 41bp 0.775052513575747 0.413898676866197 0.4647891 0.3653283 prediction 0.550105027151494 Functional Loss - CD86 ENSG00000114013 CDS Human protein_coding chr3:121836932 chr3:121836935 nonsynonymous SNV 0.010 0 24 hm5C_associated_SNPs_58861 0 0 0 0 2 CD86 chr3:121836940 5'GT 121836940 Upstream 6bp
chr14 73412678 73412678 1 + G T HNSC 73412676 + 73412656 73412696 41 GTATCATCAACCTGCAAAGTCTGAAGACCCCTACGCTCAAG GTATCATCAACCTGCAAAGTCTTAAGACCCCTACGCTCAAG < 41bp 0.775045104214693 0.444074501431013 0.047234446 0.040531665 prediction 0.550090208429385 Functional Loss - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73412676 chr14:73412678 synonymous SNV . 0 23 hm5C_associated_SNPs_58862 0 0 1 0 3 DCAF4 chr14:73412592 3'AG 73412592 Downstream 87bp
chr14 73412678 73412678 1 + G T HNSC 73412676 + 73412656 73412696 41 GTATCATCAACCTGCAAAGTCTGAAGACCCCTACGCTCAAG GTATCATCAACCTGCAAAGTCTTAAGACCCCTACGCTCAAG < 41bp 0.775045104214693 0.444074501431013 0.047234446 0.040531665 prediction 0.550090208429385 Functional Loss - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73412676 chr14:73412678 synonymous SNV . 0 23 hm5C_associated_SNPs_58862 0 0 1 0 3 DCAF4 chr14:73412596 3'AG 73412596 Downstream 83bp
chr14 73412678 73412678 1 + G T HNSC 73412676 + 73412656 73412696 41 GTATCATCAACCTGCAAAGTCTGAAGACCCCTACGCTCAAG GTATCATCAACCTGCAAAGTCTTAAGACCCCTACGCTCAAG < 41bp 0.775045104214693 0.444074501431013 0.047234446 0.040531665 prediction 0.550090208429385 Functional Loss - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73412676 chr14:73412678 synonymous SNV . 0 23 hm5C_associated_SNPs_58862 0 0 1 0 3 DCAF4 chr14:73412735 5'GT 73412735 Upstream 58bp
chr12 75875685 75875685 1 + G T LUAD 75875683 + 75875663 75875703 41 GCCAGTTTTCACATAATACACGGCTGAAGCCACCCCACAAG GCCAGTTTTCACATAATACACGTCTGAAGCCACCCCACAAG < 41bp 0.850609345752865 0.575565275228461 0.35989767 0.077739924 prediction 0.550088141048809 Functional Loss - GLIPR1 ENSG00000139278 CDS Human protein_coding chr12:75875683 chr12:75875685 synonymous SNV . 0 23 hm5C_associated_SNPs_58863 0 0 0 0 1 GLIPR1 chr12:75875614 3'AG 75875614 Downstream 72bp
chr4 59340 59340 1 + G T COAD 59337 + 59317 59357 41 TTTCAGGAACTCGTAACATTCAGGGATGTGGCCATAGAATT TTTCAGGAACTCGTAACATTCAGTGATGTGGCCATAGAATT < 41bp 0.775028653236477 0.400570830345713 0.8985194 0.25677907 prediction 0.550057306472954 Functional Loss - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:59337 chr4:59340 nonsynonymous SNV 0.507 1 24 hm5C_associated_SNPs_58865 0 0 1 0 1 ZNF595;ZNF718 chr4:59323 3'AG 59323 Downstream 18bp
chr1 228033666 228033666 1 + G C LUAD 228033662 + 228033642 228033682 41 TCTTCCTTTCTAGGGCGACTCCGGGGGCCCACTTGTCTGTG TCTTCCTTTCTAGGGCGACTCCGGCGGCCCACTTGTCTGTG < 41bp 0.785309931722308 0.510282405737035 0.92785436 0.42189556 prediction 0.550055051970546 Functional Loss - PRSS38 ENSG00000185888 CDS Human protein_coding chr1:228033662 chr1:228033666 synonymous SNV . 0 25 hm5C_associated_SNPs_58866 0 0 0 0 1 PRSS38 chr1:228033655 3'AG 228033655 Downstream 12bp
chr19 54967589 54967589 1 + G T LUAD 54967586 + 54967566 54967606 41 GGAACCCGCCCCCTAAGGGCCGGGGCGGTCGAGGGGCCCAT GGAACCCGCCCCCTAAGGGCCGGTGCGGTCGAGGGGCCCAT < 41bp 0.77500980499309 0.37797797647859 0.7756684 0.23128638 prediction 0.550019609986179 Functional Loss - LENG8 ENSG00000167615 CDS Human protein_coding chr19:54967586 chr19:54967589 nonsynonymous SNV 0.430 3 24 hm5C_associated_SNPs_58871 0 0 1 0 2 LENG8 chr19:54967504 3'AG 54967504 Downstream 86bp
chr19 54967589 54967589 1 + G T LUAD 54967586 + 54967566 54967606 41 GGAACCCGCCCCCTAAGGGCCGGGGCGGTCGAGGGGCCCAT GGAACCCGCCCCCTAAGGGCCGGTGCGGTCGAGGGGCCCAT < 41bp 0.77500980499309 0.37797797647859 0.7756684 0.23128638 prediction 0.550019609986179 Functional Loss - LENG8 ENSG00000167615 CDS Human protein_coding chr19:54967586 chr19:54967589 nonsynonymous SNV 0.430 3 24 hm5C_associated_SNPs_58871 0 0 1 0 2 LENG8 chr19:54967644 5'GT 54967644 Upstream 56bp
chrX 53454999 53454999 1 + G T BLCA 53454996 + 53454976 53455016 41 AGGTGGGAGACCGAAAGCGTCGGGAAGCAGCAGAAAGAAGC AGGTGGGAGACCGAAAGCGTCGGTAAGCAGCAGAAAGAAGC < 41bp 0.900720679514035 0.625711906417399 0.8893188 0.79256696 prediction 0.550017546193271 Functional Loss - RIBC1 ENSG00000158423 CDS Human protein_coding chrX:53454996 chrX:53454999 stopgain 0.651 1 24 hm5C_associated_SNPs_58872 0 0 0 0 2 RIBC1 chrX:53454951 3'AG 53454951 Downstream 49bp
chrX 53454999 53454999 1 + G T BLCA 53454996 + 53454976 53455016 41 AGGTGGGAGACCGAAAGCGTCGGGAAGCAGCAGAAAGAAGC AGGTGGGAGACCGAAAGCGTCGGTAAGCAGCAGAAAGAAGC < 41bp 0.900720679514035 0.625711906417399 0.8893188 0.79256696 prediction 0.550017546193271 Functional Loss - RIBC1 ENSG00000158423 CDS Human protein_coding chrX:53454996 chrX:53454999 stopgain 0.651 1 24 hm5C_associated_SNPs_58872 0 0 0 0 2 RIBC1 chrX:53455032 5'GT 53455032 Upstream 34bp
chr8 11414275 11414275 1 + A C COAD 11414271 + 11414251 11414291 41 ACGTGATGAAGGCTCTGCAGCACGAGCGGCTGGTCCGACTC ACGTGATGAAGGCTCTGCAGCACGCGCGGCTGGTCCGACTC < 41bp 0.918908186222073 0.643905166320114 0.20106375 0.13035834 prediction 0.550006039803918 Functional Loss - BLK ENSG00000136573 CDS Human protein_coding chr8:11414271 chr8:11414275 nonsynonymous SNV 0.526 1 25 hm5C_associated_SNPs_58873 0 0 0 0 1 BLK chr8:11414346 5'GT 11414346 Upstream 72bp
chr12 11905465 11905465 1 + C T UCEC 11905463 + 11905443 11905483 41 GCCACTTCATGTTCCAGTGCCTCGAGCGCTCAGGATGGAGG GCCACTTCATGTTCCAGTGCCTTGAGCGCTCAGGATGGAGG < 41bp 0.783402400843999 0.508404725657392 0.15144771 0.108979285 prediction 0.549995350373214 Functional Loss - ETV6 ENSG00000139083 CDS Human protein_coding chr12:11905463 chr12:11905465 stopgain 1.000 0 23 hm5C_associated_SNPs_58875 0 0 0 0 2 ETV6 chr12:11905384 3'AG 11905384 Downstream 82bp
chr12 11905465 11905465 1 + C T UCEC 11905463 + 11905443 11905483 41 GCCACTTCATGTTCCAGTGCCTCGAGCGCTCAGGATGGAGG GCCACTTCATGTTCCAGTGCCTTGAGCGCTCAGGATGGAGG < 41bp 0.783402400843999 0.508404725657392 0.15144771 0.108979285 prediction 0.549995350373214 Functional Loss - ETV6 ENSG00000139083 CDS Human protein_coding chr12:11905463 chr12:11905465 stopgain 1.000 0 23 hm5C_associated_SNPs_58875 0 0 0 0 2 ETV6 chr12:11905513 5'GT 11905513 Upstream 49bp
chr5 14713736 14713736 1 - C A HNSC 14713738 - 14713718 14713758 41 TCACCGGGTGGCTGATGACACTGAAGAAAACCTTCGTCCTT TCACCGGGTGGCTGATGACACTTAAGAAAACCTTCGTCCTT < 41bp 0.858628108130719 0.583639363025965 0.09900504 0.04079956 prediction 0.549977490209508 Functional Loss - ANKH ENSG00000154122 CDS Human protein_coding chr5:14713738 chr5:14713736 synonymous SNV . 0 23 hm5C_associated_SNPs_58877 0 0 0 0 2 ANKH chr5:14713653 5'GT 14713653 Upstream 84bp
chr5 14713736 14713736 1 - C A HNSC 14713738 - 14713718 14713758 41 TCACCGGGTGGCTGATGACACTGAAGAAAACCTTCGTCCTT TCACCGGGTGGCTGATGACACTTAAGAAAACCTTCGTCCTT < 41bp 0.858628108130719 0.583639363025965 0.09900504 0.04079956 prediction 0.549977490209508 Functional Loss - ANKH ENSG00000154122 CDS Human protein_coding chr5:14713738 chr5:14713736 synonymous SNV . 0 23 hm5C_associated_SNPs_58877 0 0 0 0 2 ANKH chr5:14713776 3'AG 14713776 Downstream 41bp
chr2 113737665 113737665 1 + G T UCEC 113737663 + 113737643 113737683 41 ATCCCATTTATTTGGGAATCCAGAATCCAGAAATGTGTTTG ATCCCATTTATTTGGGAATCCATAATCCAGAAATGTGTTTG < 41bp 0.774988743699741 0.439658078434688 0.2834546 0.23693281 prediction 0.549977487399482 Functional Loss - IL36G ENSG00000136688 CDS Human protein_coding chr2:113737663 chr2:113737665 nonsynonymous SNV 0.387 1 23 hm5C_associated_SNPs_58878 0 0 0 0 2 IL36G chr2:113737586 3'AG 113737586 Downstream 80bp
chr2 113737665 113737665 1 + G T UCEC 113737663 + 113737643 113737683 41 ATCCCATTTATTTGGGAATCCAGAATCCAGAAATGTGTTTG ATCCCATTTATTTGGGAATCCATAATCCAGAAATGTGTTTG < 41bp 0.774988743699741 0.439658078434688 0.2834546 0.23693281 prediction 0.549977487399482 Functional Loss - IL36G ENSG00000136688 CDS Human protein_coding chr2:113737663 chr2:113737665 nonsynonymous SNV 0.387 1 23 hm5C_associated_SNPs_58878 0 0 0 0 2 IL36G chr2:113737725 5'GT 113737725 Upstream 61bp
chr3 133494394 133494394 1 + C T UCEC 133494392 + 133494372 133494412 41 AACTGCCACCTGGCCAGAGCCCCGAATCACGCTGTGGTCAC AACTGCCACCTGGCCAGAGCCCTGAATCACGCTGTGGTCAC < 41bp 0.785176247966711 0.510190622287037 0.30187893 0.24110767 prediction 0.549971251359349 Functional Loss - TF ENSG00000091513 CDS Human protein_coding chr3:133494392 chr3:133494394 nonsynonymous SNV 0.818 4 23 hm5C_associated_SNPs_58879 0 0 1 0 2 TF chr3:133494391 3'AG 133494391 Downstream 4bp
chr3 133494394 133494394 1 + C T UCEC 133494392 + 133494372 133494412 41 AACTGCCACCTGGCCAGAGCCCCGAATCACGCTGTGGTCAC AACTGCCACCTGGCCAGAGCCCTGAATCACGCTGTGGTCAC < 41bp 0.785176247966711 0.510190622287037 0.30187893 0.24110767 prediction 0.549971251359349 Functional Loss - TF ENSG00000091513 CDS Human protein_coding chr3:133494392 chr3:133494394 nonsynonymous SNV 0.818 4 23 hm5C_associated_SNPs_58879 0 0 1 0 2 TF chr3:133494461 5'GT 133494461 Upstream 68bp
chr1 203830805 203830805 1 + G T LUAD 203830802 + 203830782 203830822 41 TCCACCATGGCGTACCGTGGCCAGGGTCAGAAAGTGCAGAA TCCACCATGGCGTACCGTGGCCATGGTCAGAAAGTGCAGAA < 41bp 0.774964533903078 0.464175265097015 0.88557804 0.3329206 prediction 0.549929067806156 Functional Loss - SNRPE ENSG00000182004 CDS Human protein_coding chr1:203830802 chr1:203830805 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_58881 0 0 1 2 2 SNRPE chr1:203830841 5'GT 203830841 Upstream 37bp
chr1 203830805 203830805 1 + G T LUAD 203830802 + 203830782 203830822 41 TCCACCATGGCGTACCGTGGCCAGGGTCAGAAAGTGCAGAA TCCACCATGGCGTACCGTGGCCATGGTCAGAAAGTGCAGAA < 41bp 0.774964533903078 0.464175265097015 0.88557804 0.3329206 prediction 0.549929067806156 Functional Loss - SNRPE ENSG00000182004 CDS Human protein_coding chr1:203830802 chr1:203830805 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_58881 0 0 1 2 2 SNRPE chr1:203830871 5'GT 203830871 Upstream 67bp
chr4 71659508 71659508 1 + C T UCEC 71659506 + 71659486 71659526 41 TGTGGCTCACATCCAGATTGCGCCAGGCTGAGCGAAGCCGC TGTGGCTCACATCCAGATTGCGTCAGGCTGAGCGAAGCCGC < 41bp 0.796562406803626 0.521600536564241 0.2213608 0.2106055 prediction 0.54992374047877 Functional Loss - RUFY3 ENSG00000018189 CDS Human protein_coding chr4:71659506 chr4:71659508 synonymous SNV . 0 23 hm5C_associated_SNPs_58883 0 0 0 0 1 RUFY3 chr4:71659502 3'AG 71659502 Downstream 7bp
chr2 28841253 28841253 1 + G C UCEC 28841249 + 28841229 28841269 41 ACATCAAAGTGGTGGCCGCCCTGGGTGACTCTCTGACTGTG ACATCAAAGTGGTGGCCGCCCTGGCTGACTCTCTGACTGTG < 41bp 0.774958971834227 0.489565670675879 0.82994896 0.43381095 prediction 0.549917943668453 Functional Loss - PLB1 ENSG00000163803 CDS Human protein_coding chr2:28841249 chr2:28841253 nonsynonymous SNV 0.351 5 25 hm5C_associated_SNPs_58884 0 0 0 1 2 PLB1 chr2:28841208 3'AG 28841208 Downstream 46bp
chr2 28841253 28841253 1 + G C UCEC 28841249 + 28841229 28841269 41 ACATCAAAGTGGTGGCCGCCCTGGGTGACTCTCTGACTGTG ACATCAAAGTGGTGGCCGCCCTGGCTGACTCTCTGACTGTG < 41bp 0.774958971834227 0.489565670675879 0.82994896 0.43381095 prediction 0.549917943668453 Functional Loss - PLB1 ENSG00000163803 CDS Human protein_coding chr2:28841249 chr2:28841253 nonsynonymous SNV 0.351 5 25 hm5C_associated_SNPs_58884 0 0 0 1 2 PLB1 chr2:28841266 5'GT 28841266 Upstream 14bp
chr20 43940931 43940931 1 + G C OV 43940927 + 43940907 43940947 41 GGAAGCACTTTCGGCTGGTGCTGCGGCTGGTGCTGCGCGGG GGAAGCACTTTCGGCTGGTGCTGCCGCTGGTGCTGCGCGGG < 41bp 0.774940144389182 0.482318692804336 0.5223225 0.40992227 prediction 0.549880288778365 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43940927 chr20:43940931 nonsynonymous SNV 0.975 3 25 hm5C_associated_SNPs_58887 0 0 0 0 1 RBPJL chr20:43940861 3'AG 43940861 Downstream 71bp
chr1 43779579 43779579 1 + G T LUAD 43779577 + 43779557 43779597 41 TCCTGGCTGCCCTTTTAACCCTGGTGTGCATCCGCAGAAGC TCCTGGCTGCCCTTTTAACCCTTGTGTGCATCCGCAGAAGC < 41bp 0.844743993251366 0.569815803433303 0.2761919 0.07137823 prediction 0.549856379636126 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43779577 chr1:43779579 synonymous SNV . 0 23 hm5C_associated_SNPs_58889 0 0 0 0 1 TIE1 chr1:43779639 5'GT 43779639 Upstream 61bp
chr10 75557153 75557153 1 + G T UCEC 75557151 + 75557131 75557171 41 TTAGGCATGGCCAGCATTGACAGCAGTGCCCCTGAAACAAC TTAGGCATGGCCAGCATTGACATCAGTGCCCCTGAAACAAC < 41bp 0.832182108363148 0.557258683788139 0.31704646 0.11128187 prediction 0.549846849150018 Functional Loss - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75557151 chr10:75557153 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_58890 0 0 1 0 1 ZSWIM8 chr10:75557135 3'AG 75557135 Downstream 19bp
chr3 10953792 10953792 1 + A T UCEC 10953788 + 10953768 10953808 41 CCTACAGGTCTGGGTAGATGCTGGAACGCAGATCTTTTTCT CCTACAGGTCTGGGTAGATGCTGGTACGCAGATCTTTTTCT < 41bp 0.819847027858918 0.544929767184203 0.5619292 0.3097564 prediction 0.549834521349428 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10953788 chr3:10953792 synonymous SNV . 0 25 hm5C_associated_SNPs_58891 0 0 1 0 2 SLC6A11 chr3:10953775 3'AG 10953775 Downstream 18bp
chr3 10953792 10953792 1 + A T UCEC 10953788 + 10953768 10953808 41 CCTACAGGTCTGGGTAGATGCTGGAACGCAGATCTTTTTCT CCTACAGGTCTGGGTAGATGCTGGTACGCAGATCTTTTTCT < 41bp 0.819847027858918 0.544929767184203 0.5619292 0.3097564 prediction 0.549834521349428 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10953788 chr3:10953792 synonymous SNV . 0 25 hm5C_associated_SNPs_58891 0 0 1 0 2 SLC6A11 chr3:10953878 5'GT 10953878 Upstream 87bp
chr20 48500447 48500447 1 + G T BLCA 48500445 + 48500425 48500465 41 ACCTGGAGCCCATGGAGAAGCGGCAGCTCATCGGCACCACC ACCTGGAGCCCATGGAGAAGCGTCAGCTCATCGGCACCACC < 41bp 0.868104660465834 0.593190191312337 0.57556033 0.17237619 prediction 0.549828938306994 Functional Loss - SLC9A8 ENSG00000197818 CDS Human protein_coding chr20:48500445 chr20:48500447 synonymous SNV . 0 23 hm5C_associated_SNPs_58893 0 0 1 0 1 SLC9A8 chr20:48500383 3'AG 48500383 Downstream 65bp
chr1 109261651 109261651 1 + C T SARC 109261649 + 109261629 109261669 41 AACAGAATCCCTGGGGATGACTCCACCTGCAATCAGAGAAC AACAGAATCCCTGGGGATGACTTCACCTGCAATCAGAGAAC < 41bp 0.78509082473337 0.510192703675501 0.9270122 0.1282041 prediction 0.549796242115737 Functional Loss - FNDC7 ENSG00000143107 CDS Human protein_coding chr1:109261649 chr1:109261651 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_58900 0 0 0 0 1 FNDC7 chr1:109261671 5'GT 109261671 Upstream 21bp
chr10 96540285 96540285 1 + G T LUAD 96540282 + 96540262 96540302 41 CCTGTGATCCCACTTTCATCCTGGGCTGTGCTCCCTGCAAT CCTGTGATCCCACTTTCATCCTGTGCTGTGCTCCCTGCAAT < 41bp 0.774892433729589 0.385278270631135 0.24566442 0.018529981 prediction 0.549784867459178 Functional Loss - CYP2C19 ENSG00000165841 CDS Human protein_coding chr10:96540282 chr10:96540285 nonsynonymous SNV 0.939 1 24 hm5C_associated_SNPs_58902 0 0 0 0 1 CYP2C19 chr10:96540256 3'AG 96540256 Downstream 30bp
chr8 91031391 91031391 1 + A T STAD 91031387 + 91031367 91031407 41 GTCAGAACTGATCAAAGTTGCAGGACATCCTAATGTAAGTG GTCAGAACTGATCAAAGTTGCAGGTCATCCTAATGTAAGTG < 41bp 0.774889781688672 0.46173936843259 0.38679588 0.3160656 prediction 0.549779563377343 Functional Loss - DECR1 ENSG00000104325 CDS Human protein_coding chr8:91031387 chr8:91031391 synonymous SNV . 0 25 hm5C_associated_SNPs_58904 0 0 0 0 2 DECR1 chr8:91031314 3'AG 91031314 Downstream 78bp
chr8 91031391 91031391 1 + A T STAD 91031387 + 91031367 91031407 41 GTCAGAACTGATCAAAGTTGCAGGACATCCTAATGTAAGTG GTCAGAACTGATCAAAGTTGCAGGTCATCCTAATGTAAGTG < 41bp 0.774889781688672 0.46173936843259 0.38679588 0.3160656 prediction 0.549779563377343 Functional Loss - DECR1 ENSG00000104325 CDS Human protein_coding chr8:91031387 chr8:91031391 synonymous SNV . 0 25 hm5C_associated_SNPs_58904 0 0 0 0 2 DECR1 chr8:91031400 5'GT 91031400 Upstream 10bp
chr1 215298027 215298027 1 + A C UCEC 215298023 + 215298003 215298043 41 ATTATACCGTTAGGAAACACCTCCAATCAAATCAGTCACTG ATTATACCGTTAGGAAACACCTCCCATCAAATCAGTCACTG < 41bp 0.774877686466948 0.352694409659274 0.9467883 0.08948514 prediction 0.549755372933897 Functional Loss - KCNK2 ENSG00000082482 CDS Human protein_coding chr1:215298023 chr1:215298027 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_58906 0 0 0 2 2 KCNK2 chr1:215297976 3'AG 215297976 Downstream 52bp
chr1 215298027 215298027 1 + A C UCEC 215298023 + 215298003 215298043 41 ATTATACCGTTAGGAAACACCTCCAATCAAATCAGTCACTG ATTATACCGTTAGGAAACACCTCCCATCAAATCAGTCACTG < 41bp 0.774877686466948 0.352694409659274 0.9467883 0.08948514 prediction 0.549755372933897 Functional Loss - KCNK2 ENSG00000082482 CDS Human protein_coding chr1:215298023 chr1:215298027 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_58906 0 0 0 2 2 KCNK2 chr1:215298093 5'GT 215298093 Upstream 67bp
chr2 101591324 101591324 1 + G T STAD 101591321 + 101591301 101591341 41 AACACACTCGACGTGGGTGCCTCGGGCCTTAATACCAGTCA AACACACTCGACGTGGGTGCCTCTGGCCTTAATACCAGTCA < 41bp 0.774872008162256 0.392403757541069 0.31085104 0.21912438 prediction 0.549744016324512 Functional Loss - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101591321 chr2:101591324 synonymous SNV . 0 24 hm5C_associated_SNPs_58908 0 0 1 0 1 NPAS2 chr2:101591406 5'GT 101591406 Upstream 83bp
chr1 43240973 43240973 1 + G T UCEC 43240970 + 43240950 43240990 41 CGTATGAGGACATTGAGAAGCAAGATGCTAAAATCAGCATG CGTATGAGGACATTGAGAAGCAATATGCTAAAATCAGCATG < 41bp 0.871004462665657 0.596138623957179 0.70044446 0.31593764 prediction 0.549731677416957 Functional Loss - C1orf50 ENSG00000164008 CDS Human protein_coding chr1:43240970 chr1:43240973 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_58909 0 0 1 0 1 C1orf50 chr1:43240880 3'AG 43240880 Downstream 94bp
chr10 131964859 131964859 1 + G T LUAD 131964857 + 131964837 131964877 41 TCTCAGATGAAGAGGTTCGACAGGGACTCAAAGCCTATTCC TCTCAGATGAAGAGGTTCGACATGGACTCAAAGCCTATTCC < 41bp 0.861013364037791 0.586153954647738 0.8975557 0.34593964 prediction 0.549718818780107 Functional Loss - GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131964857 chr10:131964859 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_58910 0 0 1 5 2 GLRX3 chr10:131964771 3'AG 131964771 Downstream 89bp
chr10 131964859 131964859 1 + G T LUAD 131964857 + 131964837 131964877 41 TCTCAGATGAAGAGGTTCGACAGGGACTCAAAGCCTATTCC TCTCAGATGAAGAGGTTCGACATGGACTCAAAGCCTATTCC < 41bp 0.861013364037791 0.586153954647738 0.8975557 0.34593964 prediction 0.549718818780107 Functional Loss - GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131964857 chr10:131964859 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_58910 0 0 1 5 2 GLRX3 chr10:131964943 5'GT 131964943 Upstream 85bp
chr19 3286018 3286018 1 + G C LUSC 3286017 + 3285997 3286037 41 CCCTCCTGCAGCAGCAGCAGCGAGAAGGTGAGGCGGCCGCA CCCTCCTGCAGCAGCAGCAGCCAGAAGGTGAGGCGGCCGCA < 41bp 0.817561593795676 0.542703189235999 0.9200415 0.9133798 prediction 0.549716809119354 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3286017 chr19:3286018 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_58912 0 0 0 0 2 CELF5 chr19:3285940 3'AG 3285940 Downstream 79bp
chr19 3286018 3286018 1 + G C LUSC 3286017 + 3285997 3286037 41 CCCTCCTGCAGCAGCAGCAGCGAGAAGGTGAGGCGGCCGCA CCCTCCTGCAGCAGCAGCAGCCAGAAGGTGAGGCGGCCGCA < 41bp 0.817561593795676 0.542703189235999 0.9200415 0.9133798 prediction 0.549716809119354 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3286017 chr19:3286018 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_58912 0 0 0 0 2 CELF5 chr19:3286023 5'GT 3286023 Upstream 6bp
chr19 35512502 35512502 1 + C T HNSC 35512500 + 35512480 35512520 41 GCGGCATTGAAGACTATTTCCACCATCTGGGTAGGGACAGA GCGGCATTGAAGACTATTTCCATCATCTGGGTAGGGACAGA < 41bp 0.774855055449797 0.498580813103799 0.028029263 0.10767847 prediction 0.549710110899595 Functional Loss - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35512500 chr19:35512502 synonymous SNV . 0 23 hm5C_associated_SNPs_58914 0 0 1 0 1 GRAMD1A chr19:35512509 5'GT 35512509 Upstream 8bp
chr7 18624936 18624936 1 + G T HNSC 18624933 + 18624913 18624953 41 AGTCAGAAGTTCCTGTGGGCCTGGAGCCCATCTCACCTTTA AGTCAGAAGTTCCTGTGGGCCTGTAGCCCATCTCACCTTTA < 41bp 0.793761072206823 0.5189070344369 0.32323274 0.0914512 prediction 0.549708075539846 Functional Loss - HDAC9 ENSG00000048052 CDS Human protein_coding chr7:18624933 chr7:18624936 stopgain 1.000 1 24 hm5C_associated_SNPs_58915 0 0 0 0 1 HDAC9 chr7:18624904 3'AG 18624904 Downstream 33bp
chr5 134002605 134002605 1 + C T SKCM 134002603 + 134002583 134002623 41 CCCTCCAGCTGGAGGCCCACCCCCAGTGAGGGCCCTCACGC CCCTCCAGCTGGAGGCCCACCCTCAGTGAGGGCCCTCACGC < 41bp 0.792346191653985 0.517499313998146 0.061843216 0.04385695 prediction 0.549693755311678 Functional Loss - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134002603 chr5:134002605 nonsynonymous SNV 0.098 0 23 hm5C_associated_SNPs_58917 0 0 1 0 2 SEC24A chr5:134002513 3'AG 134002513 Downstream 93bp
chr5 134002605 134002605 1 + C T SKCM 134002603 + 134002583 134002623 41 CCCTCCAGCTGGAGGCCCACCCCCAGTGAGGGCCCTCACGC CCCTCCAGCTGGAGGCCCACCCTCAGTGAGGGCCCTCACGC < 41bp 0.792346191653985 0.517499313998146 0.061843216 0.04385695 prediction 0.549693755311678 Functional Loss - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134002603 chr5:134002605 nonsynonymous SNV 0.098 0 23 hm5C_associated_SNPs_58917 0 0 1 0 2 SEC24A chr5:134002686 5'GT 134002686 Upstream 82bp
chr1 158152875 158152875 1 + G T BLCA 158152872 + 158152852 158152892 41 AGCAACCCTGGATGTGGTGGCTGGGGAGGCAGCTGGCCTGT AGCAACCCTGGATGTGGTGGCTGTGGAGGCAGCTGGCCTGT < 41bp 0.909079172907355 0.634238392539352 0.89205515 0.4468006 prediction 0.549681560736006 Functional Loss - CD1D ENSG00000158473 CDS Human protein_coding chr1:158152872 chr1:158152875 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_58918 0 0 0 0 1 CD1D chr1:158152946 5'GT 158152946 Upstream 72bp
chr14 75359643 75359643 1 + G C BLCA 75359639 + 75359619 75359659 41 CCCTGCAGCACCCATACCCACTCAGATGCCACCGGTGCCCT CCCTGCAGCACCCATACCCACTCACATGCCACCGGTGCCCT < 41bp 0.774826753738544 0.494614964524815 0.016706973 0.019357264 prediction 0.549653507477089 Functional Loss - DLST ENSG00000119689 CDS Human protein_coding chr14:75359639 chr14:75359643 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_58921 0 0 1 0 1 DLST chr14:75359689 5'GT 75359689 Upstream 47bp
chr11 130010312 130010312 1 + G T LUAD 130010310 + 130010290 130010330 41 CAGGATCTGGAGTGGGAGAGCAGGATGGGGGACTGATCGGT CAGGATCTGGAGTGGGAGAGCATGATGGGGGACTGATCGGT < 41bp 0.86098673983345 0.586184088894669 0.91509664 0.63030064 prediction 0.549605301877562 Functional Loss - APLP2 ENSG00000084234 CDS Human protein_coding chr11:130010310 chr11:130010312 nonsynonymous SNV 0.978 2 23 hm5C_associated_SNPs_58924 0 0 1 0 2 APLP2 chr11:130010293 3'AG 130010293 Downstream 20bp
chr11 130010312 130010312 1 + G T LUAD 130010310 + 130010290 130010330 41 CAGGATCTGGAGTGGGAGAGCAGGATGGGGGACTGATCGGT CAGGATCTGGAGTGGGAGAGCATGATGGGGGACTGATCGGT < 41bp 0.86098673983345 0.586184088894669 0.91509664 0.63030064 prediction 0.549605301877562 Functional Loss - APLP2 ENSG00000084234 CDS Human protein_coding chr11:130010310 chr11:130010312 nonsynonymous SNV 0.978 2 23 hm5C_associated_SNPs_58924 0 0 1 0 2 APLP2 chr11:130010378 5'GT 130010378 Upstream 67bp
chr6 41757003 41757003 1 + G C UCEC 41757002 + 41756982 41757022 41 AAATTTGGGACTCTTTGCTGCGGGAGTTTGGCTGGCCAGGA AAATTTGGGACTCTTTGCTGCCGGAGTTTGGCTGGCCAGGA < 41bp 0.793753634133799 0.518956293862987 0.9326743 0.90784836 prediction 0.549594680541625 Functional Loss - TOMM6 ENSG00000214736 CDS Human protein_coding chr6:41757002 chr6:41757003 synonymous SNV . 0 22 hm5C_associated_SNPs_58926 0 0 1 0 2 TOMM6 chr6:41756970 3'AG 41756970 Downstream 34bp
chr6 41757003 41757003 1 + G C UCEC 41757002 + 41756982 41757022 41 AAATTTGGGACTCTTTGCTGCGGGAGTTTGGCTGGCCAGGA AAATTTGGGACTCTTTGCTGCCGGAGTTTGGCTGGCCAGGA < 41bp 0.793753634133799 0.518956293862987 0.9326743 0.90784836 prediction 0.549594680541625 Functional Loss - TOMM6 ENSG00000214736 CDS Human other chr6:41757002 chr6:41757003 synonymous SNV . 0 22 hm5C_associated_SNPs_58926 0 0 1 0 2 TOMM6 chr6:41757074 5'GT 41757074 Upstream 72bp
chr16 77918564 77918564 1 + G C LUAD 77918563 + 77918543 77918583 41 TGAGGAGAACAAAGTCATCGCGGGGTTTTCCCTTTTAAATC TGAGGAGAACAAAGTCATCGCCGGGTTTTCCCTTTTAAATC < 41bp 0.829641279126855 0.554883980309718 0.91480225 0.87783587 prediction 0.549514597634274 Functional Loss - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77918563 chr16:77918564 synonymous SNV . 0 22 hm5C_associated_SNPs_58936 0 0 0 0 1 VAT1L chr16:77918505 3'AG 77918505 Downstream 60bp
chr3 154886336 154886336 1 + A T LUAD 154886332 + 154886312 154886352 41 TGACTGGTGGACTCAACAGTCTGCAAGTAACTTTAAGGAGC TGACTGGTGGACTCAACAGTCTGCTAGTAACTTTAAGGAGC < 41bp 0.774754172573488 0.457597522664583 0.14091292 0.078363925 prediction 0.549508345146976 Functional Loss - MME ENSG00000196549 CDS Human protein_coding chr3:154886332 chr3:154886336 synonymous SNV . 0 25 hm5C_associated_SNPs_58937 0 0 0 0 2 MME chr3:154886281 3'AG 154886281 Downstream 56bp
chr3 154886336 154886336 1 + A T LUAD 154886332 + 154886312 154886352 41 TGACTGGTGGACTCAACAGTCTGCAAGTAACTTTAAGGAGC TGACTGGTGGACTCAACAGTCTGCTAGTAACTTTAAGGAGC < 41bp 0.774754172573488 0.457597522664583 0.14091292 0.078363925 prediction 0.549508345146976 Functional Loss - MME ENSG00000196549 CDS Human protein_coding chr3:154886332 chr3:154886336 synonymous SNV . 0 25 hm5C_associated_SNPs_58937 0 0 0 0 2 MME chr3:154886414 5'GT 154886414 Upstream 79bp
chr18 48591909 48591909 1 + G T LUAD 48591907 + 48591887 48591927 41 TGATGGATACGTGGACCCTTCTGGAGGAGATCGCTTTTGTT TGATGGATACGTGGACCCTTCTTGAGGAGATCGCTTTTGTT < 41bp 0.847658773278537 0.572905005957577 0.29544157 0.10508853 prediction 0.54950753464192 Functional Loss - SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48591907 chr18:48591909 stopgain 0.998 1 23 hm5C_associated_SNPs_58938 1 0 1 0 1 SMAD4 chr18:48591976 5'GT 48591976 Upstream 68bp
chr2 27293055 27293055 1 + G T UCEC 27293053 + 27293033 27293073 41 TCCCCATCCTGGAATTGTTACAGCAGGGGTCCCTTGGGCCA TCCCCATCCTGGAATTGTTACATCAGGGGTCCCTTGGGCCA < 41bp 0.774749409269047 0.443077990305639 0.6076038 0.3944951 prediction 0.549498818538095 Functional Loss - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27293053 chr2:27293055 nonsynonymous SNV 0.970 0 23 hm5C_associated_SNPs_58939 0 0 1 0 1 AGBL5 chr2:27292960 3'AG 27292960 Downstream 96bp
chr17 61769725 61769725 1 + G T LUAD 61769723 + 61769703 61769743 41 TCCGTCACTGGCACACCCTACTGGATGAGCCCTGAGGTGAT TCCGTCACTGGCACACCCTACTTGATGAGCCCTGAGGTGAT < 41bp 0.854204143823421 0.579465881561673 0.17863446 0.034627676 prediction 0.549476524523496 Functional Loss - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61769723 chr17:61769725 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_58940 0 0 1 0 1 MAP3K3 chr17:61769779 5'GT 61769779 Upstream 55bp
chr3 36485054 36485054 1 + G T UCEC 36485052 + 36485032 36485072 41 CGCCAGGGCTGGTCTGCATCCAGGTGGCAAGGCTCATGCCT CGCCAGGGCTGGTCTGCATCCATGTGGCAAGGCTCATGCCT < 41bp 0.877880040302421 0.603142804860664 0.9111745 0.20906687 prediction 0.549474470883513 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36485052 chr3:36485054 nonsynonymous SNV 0.120 0 23 hm5C_associated_SNPs_58941 0 0 0 0 1 STAC chr3:36485132 5'GT 36485132 Upstream 79bp
chr3 101572494 101572494 1 + G T ESCA 101572492 + 101572472 101572512 41 GATGCTCACTTGCACAGCTTCAGCATGATGCCCAGCAGCGC GATGCTCACTTGCACAGCTTCATCATGATGCCCAGCAGCGC < 41bp 0.863837177717779 0.589111972348763 0.06936765 0.0059660673 prediction 0.549450410738031 Functional Loss - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101572492 chr3:101572494 nonsynonymous SNV 0.134 2 23 hm5C_associated_SNPs_58942 0 0 0 0 1 NFKBIZ chr3:101572445 3'AG 101572445 Downstream 50bp
chr20 25257937 25257937 1 + C T PRAD 25257935 + 25257915 25257955 41 CGGAACTTGGCTGAGAACATCTCCAGGGTCCTGTATCCAAA CGGAACTTGGCTGAGAACATCTTCAGGGTCCTGTATCCAAA < 41bp 0.774719596175047 0.481601847215072 0.9398562 0.10985941 prediction 0.549439192350093 Functional Loss - PYGB ENSG00000100994 CDS Human protein_coding chr20:25257935 chr20:25257937 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_58943 0 0 1 0 2 PYGB chr20:25257880 3'AG 25257880 Downstream 58bp
chr20 25257937 25257937 1 + C T PRAD 25257935 + 25257915 25257955 41 CGGAACTTGGCTGAGAACATCTCCAGGGTCCTGTATCCAAA CGGAACTTGGCTGAGAACATCTTCAGGGTCCTGTATCCAAA < 41bp 0.774719596175047 0.481601847215072 0.9398562 0.10985941 prediction 0.549439192350093 Functional Loss - PYGB ENSG00000100994 CDS Human protein_coding chr20:25257935 chr20:25257937 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_58943 0 0 1 0 2 PYGB chr20:25257962 5'GT 25257962 Upstream 26bp
chr2 207457381 207457381 1 + C T BLCA 207457379 + 207457359 207457399 41 CTTACTCTGTACCAATCTTACTCGAGCTCCACGTATTGGTC CTTACTCTGTACCAATCTTACTTGAGCTCCACGTATTGGTC < 41bp 0.774718594967483 0.487135971247239 0.3322956 0.2227082 prediction 0.549437189934967 Functional Loss - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207457379 chr2:207457381 stopgain 0.996 0 23 hm5C_associated_SNPs_58944 0 0 0 1 2 ADAM23 chr2:207457341 3'AG 207457341 Downstream 41bp
chr2 207457381 207457381 1 + C T BLCA 207457379 + 207457359 207457399 41 CTTACTCTGTACCAATCTTACTCGAGCTCCACGTATTGGTC CTTACTCTGTACCAATCTTACTTGAGCTCCACGTATTGGTC < 41bp 0.774718594967483 0.487135971247239 0.3322956 0.2227082 prediction 0.549437189934967 Functional Loss - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207457379 chr2:207457381 stopgain 0.996 0 23 hm5C_associated_SNPs_58944 0 0 0 1 2 ADAM23 chr2:207457460 5'GT 207457460 Upstream 80bp
chr1 113197226 113197226 1 + G T PRAD 113197223 + 113197203 113197243 41 AGCAGATGGAGGTCTGAAGTCTTGGAGAGAATCCTGTGACA AGCAGATGGAGGTCTGAAGTCTTTGAGAGAATCCTGTGACA < 41bp 0.774708735619797 0.402691280440141 0.15399265 0.13755253 prediction 0.549417471239593 Functional Loss - CAPZA1 ENSG00000116489 CDS Human protein_coding chr1:113197223 chr1:113197226 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_58946 0 0 1 0 1 CAPZA1 chr1:113197293 5'GT 113197293 Upstream 68bp
chr11 2610084 2610084 1 + G T LUAD 2610082 + 2610062 2610102 41 TGTCGACGGCTATGACAGTTCTGGTGAGAACCCCTCAGGCA TGTCGACGGCTATGACAGTTCTTGTGAGAACCCCTCAGGCA < 41bp 0.774691273727701 0.453046237164284 0.46091807 0.3529606 prediction 0.549382547455401 Functional Loss - KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2610082 chr11:2610084 nonsynonymous SNV 0.816 1 23 hm5C_associated_SNPs_58948 0 0 0 0 1 KCNQ1 chr11:2610084 5'GT 2610084 Upstream 1bp
chr15 72862610 72862610 1 + G T GBM 72862607 + 72862587 72862627 41 AATTGTAAAGCAGAGTTTTGCTGGGTGTGTCTTGGCCCATG AATTGTAAAGCAGAGTTTTGCTGTGTGTGTCTTGGCCCATG < 41bp 0.896099215123548 0.621412636963279 0.89631975 0.27806282 prediction 0.549373156320538 Functional Loss - ARIH1 ENSG00000166233 CDS Human protein_coding chr15:72862607 chr15:72862610 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_58949 0 0 1 0 2 ARIH1 chr15:72862518 3'AG 72862518 Downstream 93bp
chr15 72862610 72862610 1 + G T GBM 72862607 + 72862587 72862627 41 AATTGTAAAGCAGAGTTTTGCTGGGTGTGTCTTGGCCCATG AATTGTAAAGCAGAGTTTTGCTGTGTGTGTCTTGGCCCATG < 41bp 0.896099215123548 0.621412636963279 0.89631975 0.27806282 prediction 0.549373156320538 Functional Loss - ARIH1 ENSG00000166233 CDS Human protein_coding chr15:72862607 chr15:72862610 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_58949 0 0 1 0 2 ARIH1 chr15:72862648 5'GT 72862648 Upstream 39bp
chr21 45108104 45108104 1 + G T SARC 45108102 + 45108082 45108122 41 CGGGGTGCTGGAGTCCGAAGCTGGGCAACCCCAGGCTCTGG CGGGGTGCTGGAGTCCGAAGCTTGGCAACCCCAGGCTCTGG < 41bp 0.774683976977251 0.42847128804588 0.70449233 0.11115843 prediction 0.549367953954503 Functional Loss - RRP1B ENSG00000160208 CDS Human protein_coding chr21:45108102 chr21:45108104 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_58950 0 0 1 0 1 RRP1B chr21:45108121 5'GT 45108121 Upstream 18bp
chr19 17643158 17643158 1 + G T SARC 17643156 + 17643136 17643176 41 GGCAGCCGATCTTCTGTGTTCTGCGTGGGGACGGCCGCCTA GGCAGCCGATCTTCTGTGTTCTTCGTGGGGACGGCCGCCTA < 41bp 0.848062338954409 0.573383633614006 0.29674733 0.2722991 prediction 0.549357410680805 Functional Loss - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17643156 chr19:17643158 synonymous SNV . 0 23 hm5C_associated_SNPs_58951 0 0 0 0 2 FAM129C chr19:17643072 3'AG 17643072 Downstream 87bp
chr19 17643158 17643158 1 + G T SARC 17643156 + 17643136 17643176 41 GGCAGCCGATCTTCTGTGTTCTGCGTGGGGACGGCCGCCTA GGCAGCCGATCTTCTGTGTTCTTCGTGGGGACGGCCGCCTA < 41bp 0.848062338954409 0.573383633614006 0.29674733 0.2722991 prediction 0.549357410680805 Functional Loss - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17643156 chr19:17643158 synonymous SNV . 0 23 hm5C_associated_SNPs_58951 0 0 0 0 2 FAM129C chr19:17643197 5'GT 17643197 Upstream 40bp
chr11 74329805 74329805 1 + G T UCEC 74329802 + 74329782 74329822 41 CCAAAGCTGCTGCTAAAACCCAAGAAACCAACAAGGAAACG CCAAAGCTGCTGCTAAAACCCAATAAACCAACAAGGAAACG < 41bp 0.774678494359412 0.401746272903321 0.8332721 0.922202 prediction 0.549356988718825 Functional Loss - POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329802 chr11:74329805 stopgain 0.933 0 24 hm5C_associated_SNPs_58952 0 0 0 0 1 POLD3 chr11:74329849 5'GT 74329849 Upstream 45bp
chr19 15754728 15754728 1 + G T UCEC 15754725 + 15754705 15754745 41 CCTTGCTTGCAGGTCACCCCCACGGAGCAGGGCATGAGGGT CCTTGCTTGCAGGTCACCCCCACTGAGCAGGGCATGAGGGT < 41bp 0.774660874170512 0.417095216788969 0.19660291 0.1210973 prediction 0.549321748341024 Functional Loss - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15754725 chr19:15754728 synonymous SNV . 0 24 hm5C_associated_SNPs_58955 0 0 0 0 1 CYP4F3 chr19:15754717 3'AG 15754717 Downstream 12bp
chr12 57957930 57957930 1 + C T UCEC 57957928 + 57957908 57957948 41 TCAGCTGATGGGAATCATTCCTCGAATTGCCCGAGACATCT TCAGCTGATGGGAATCATTCCTTGAATTGCCCGAGACATCT < 41bp 0.788120717160058 0.513463112115094 0.50482607 0.047360033 prediction 0.549315210089929 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57957928 chr12:57957930 stopgain 0.998 1 23 hm5C_associated_SNPs_58956 0 0 1 0 2 KIF5A chr12:57957891 3'AG 57957891 Downstream 40bp
chr12 57957930 57957930 1 + C T UCEC 57957928 + 57957908 57957948 41 TCAGCTGATGGGAATCATTCCTCGAATTGCCCGAGACATCT TCAGCTGATGGGAATCATTCCTTGAATTGCCCGAGACATCT < 41bp 0.788120717160058 0.513463112115094 0.50482607 0.047360033 prediction 0.549315210089929 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57957928 chr12:57957930 stopgain 0.998 1 23 hm5C_associated_SNPs_58956 0 0 1 0 2 KIF5A chr12:57957995 5'GT 57957995 Upstream 66bp
chr14 100173937 100173937 1 + G T LUSC 100173935 + 100173915 100173955 41 GGATGGAGACCAGTATGCTGCTGGGTGCCCAGAAGCCTCTG GGATGGAGACCAGTATGCTGCTTGGTGCCCAGAAGCCTCTG < 41bp 0.864551280188733 0.589902821719362 0.77037466 0.24756482 prediction 0.549296916938742 Functional Loss - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100173935 chr14:100173937 synonymous SNV . 0 23 hm5C_associated_SNPs_58957 0 0 1 0 2 CYP46A1 chr14:100173905 3'AG 100173905 Downstream 33bp
chr14 100173937 100173937 1 + G T LUSC 100173935 + 100173915 100173955 41 GGATGGAGACCAGTATGCTGCTGGGTGCCCAGAAGCCTCTG GGATGGAGACCAGTATGCTGCTTGGTGCCCAGAAGCCTCTG < 41bp 0.864551280188733 0.589902821719362 0.77037466 0.24756482 prediction 0.549296916938742 Functional Loss - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100173935 chr14:100173937 synonymous SNV . 0 23 hm5C_associated_SNPs_58957 0 0 1 0 2 CYP46A1 chr14:100174015 5'GT 100174015 Upstream 79bp
chr3 101476690 101476690 1 + C T SKCM 101476688 + 101476668 101476708 41 GCCAGTTGCATCAGGACTGTCTCCACTATCACCTACAGTTG GCCAGTTGCATCAGGACTGTCTTCACTATCACCTACAGTTG < 41bp 0.806034103366228 0.531388474950554 0.9267229 0.09398326 prediction 0.549291256831348 Functional Loss - CEP97 ENSG00000182504 CDS Human protein_coding chr3:101476688 chr3:101476690 nonsynonymous SNV 0.760 4 23 hm5C_associated_SNPs_58958 0 0 1 0 1 CEP97 chr3:101476655 3'AG 101476655 Downstream 36bp
chrX 15555263 15555263 1 + G T HNSC 15555261 + 15555241 15555281 41 CGTCTTGCCTTGTTAGGAATCTGGGAACTGAAAAGAGAAGA CGTCTTGCCTTGTTAGGAATCTTGGAACTGAAAAGAGAAGA < 41bp 0.77463300152166 0.436879140780924 0.41563508 0.19947684 prediction 0.54926600304332 Functional Loss - BMX ENSG00000102010 CDS Human protein_coding chrX:15555261 chrX:15555263 nonsynonymous SNV 0.963 4 23 hm5C_associated_SNPs_58961 0 0 0 0 1 BMX chrX:15555257 3'AG 15555257 Downstream 7bp
chr7 139655295 139655295 1 + G C LUAD 139655291 + 139655271 139655311 41 TACACCACAGATGTGGTTGCCAGCGTCGCCTTTGGCACCCC TACACCACAGATGTGGTTGCCAGCCTCGCCTTTGGCACCCC < 41bp 0.797594070076436 0.522970376014583 0.7572899 0.382697 prediction 0.549247388123707 Functional Loss - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139655291 chr7:139655295 nonsynonymous SNV 0.751 0 25 hm5C_associated_SNPs_58963 0 0 0 0 1 TBXAS1 chr7:139655258 3'AG 139655258 Downstream 38bp
chr15 40226472 40226472 1 + G T LUAD 40226469 + 40226449 40226489 41 GCTACCCGCAACGACAGGACCACGAGCTACAGGCCCTGGAG GCTACCCGCAACGACAGGACCACTAGCTACAGGCCCTGGAG < 41bp 0.888754834852551 0.614148414472568 0.24203664 0.09818521 prediction 0.549212840759966 Functional Loss - EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40226469 chr15:40226472 stopgain 1.000 1 24 hm5C_associated_SNPs_58968 0 0 1 0 1 EIF2AK4 chr15:40226540 5'GT 40226540 Upstream 69bp
chr20 46256410 46256410 1 + C T SKCM 46256408 + 46256388 46256428 41 GATATTCTGGAAGACATAAACGCCAGTCCTGAAATGCGCCA GATATTCTGGAAGACATAAACGTCAGTCCTGAAATGCGCCA < 41bp 0.774604127883565 0.494272137391142 0.45894325 0.31577185 prediction 0.549208255767129 Functional Loss - NCOA3 ENSG00000124151 CDS Human protein_coding chr20:46256408 chr20:46256410 nonsynonymous SNV 0.671 0 23 hm5C_associated_SNPs_58969 0 0 1 0 1 NCOA3 chr20:46256493 5'GT 46256493 Upstream 84bp
chr22 29439389 29439389 1 + C T COAD 29439387 + 29439367 29439407 41 CGTCAACAAGCAGAAAGTGGCTCGAGCAAGGATCCAGCACC CGTCAACAAGCAGAAAGTGGCTTGAGCAAGGATCCAGCACC < 41bp 0.781250299406646 0.506648875341579 0.120559275 0.05418983 prediction 0.549202848130135 Functional Loss - ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29439387 chr22:29439389 stopgain 0.996 1 23 hm5C_associated_SNPs_58970 0 0 1 0 1 ZNRF3 chr22:29439418 5'GT 29439418 Upstream 30bp
chr16 847886 847886 1 + G T UCEC 847884 + 847864 847904 41 AGTGGAGCGGCGCATGGGCACAGCGGTGGGCAGGAGCGAGG AGTGGAGCGGCGCATGGGCACATCGGTGGGCAGGAGCGAGG < 41bp 0.857749464275804 0.583162478507885 0.64115584 0.39043167 prediction 0.549173971535838 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:847884 chr16:847886 nonsynonymous SNV 0.002 4 23 hm5C_associated_SNPs_58971 0 0 1 0 1 CHTF18 chr16:847839 3'AG 847839 Downstream 48bp
chr11 47008816 47008816 1 + G T UCEC 47008814 + 47008794 47008834 41 GTGTGCCAGCTGCTAGAAAACAGGGAAGATATTAGCCAATA GTGTGCCAGCTGCTAGAAAACATGGAAGATATTAGCCAATA < 41bp 0.849967970746083 0.575390868220054 0.8801623 0.30279112 prediction 0.549154205052058 Functional Loss - C11orf49 ENSG00000149179 CDS Human protein_coding chr11:47008814 chr11:47008816 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_58974 0 0 1 0 2 C11orf49 chr11:47008759 3'AG 47008759 Downstream 58bp
chr11 47008816 47008816 1 + G T UCEC 47008814 + 47008794 47008834 41 GTGTGCCAGCTGCTAGAAAACAGGGAAGATATTAGCCAATA GTGTGCCAGCTGCTAGAAAACATGGAAGATATTAGCCAATA < 41bp 0.849967970746083 0.575390868220054 0.8801623 0.30279112 prediction 0.549154205052058 Functional Loss - C11orf49 ENSG00000149179 CDS Human protein_coding chr11:47008814 chr11:47008816 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_58974 0 0 1 0 2 C11orf49 chr11:47008861 5'GT 47008861 Upstream 46bp
chr1 26737905 26737905 1 + G C rs376056373 26737904 + 26737884 26737924 41 CGCCAAGGCGGCAGAAGAGGCGCCCGAGGAGGCGCCGGAGG CGCCAAGGCGGCAGAAGAGGCCCCCGAGGAGGCGCCGGAGG < 41bp 0.815166278748413 0.540597553855529 0.74625725 0.4495142 prediction 0.549137449785767 Functional Loss - LIN28A ENSG00000131914 CDS Human protein_coding chr1:26737904 chr1:26737905 synonymous SNV . 0 22 hm5C_associated_SNPs_58977 0 0 0 0 1 LIN28A chr1:26737877 3'AG 26737877 Downstream 29bp
chr15 67665742 67665742 1 + G T PAAD 67665740 + 67665720 67665760 41 TGGAATCGCATCAGGACCTCCAGGAGGACTATTATCCATAT TGGAATCGCATCAGGACCTCCATGAGGACTATTATCCATAT < 41bp 0.774560457877047 0.445033345830088 0.5096752 0.13791668 prediction 0.549120915754093 Functional Loss - IQCH ENSG00000103599 CDS Human protein_coding chr15:67665740 chr15:67665742 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_58980 0 0 0 0 2 IQCH chr15:67665705 3'AG 67665705 Downstream 38bp
chr15 67665742 67665742 1 + G T PAAD 67665740 + 67665720 67665760 41 TGGAATCGCATCAGGACCTCCAGGAGGACTATTATCCATAT TGGAATCGCATCAGGACCTCCATGAGGACTATTATCCATAT < 41bp 0.774560457877047 0.445033345830088 0.5096752 0.13791668 prediction 0.549120915754093 Functional Loss - IQCH ENSG00000103599 CDS Human protein_coding chr15:67665740 chr15:67665742 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_58980 0 0 0 0 2 IQCH chr15:67665771 5'GT 67665771 Upstream 30bp
chr1 168037639 168037639 1 + C T UCEC 168037637 + 168037617 168037657 41 ATGCTGGAAGAAACTAGAAACACCATTACAGTTCCAGCCTC ATGCTGGAAGAAACTAGAAACATCATTACAGTTCCAGCCTC < 41bp 0.774550965713579 0.491631657974776 0.05503151 0.086678594 prediction 0.549101931427159 Functional Loss - DCAF6 ENSG00000143164 CDS Human protein_coding chr1:168037637 chr1:168037639 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_58981 0 0 1 0 2 DCAF6 chr1:168037596 3'AG 168037596 Downstream 44bp
chr1 168037639 168037639 1 + C T UCEC 168037637 + 168037617 168037657 41 ATGCTGGAAGAAACTAGAAACACCATTACAGTTCCAGCCTC ATGCTGGAAGAAACTAGAAACATCATTACAGTTCCAGCCTC < 41bp 0.774550965713579 0.491631657974776 0.05503151 0.086678594 prediction 0.549101931427159 Functional Loss - DCAF6 ENSG00000143164 CDS Human protein_coding chr1:168037637 chr1:168037639 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_58981 0 0 1 0 2 DCAF6 chr1:168037701 5'GT 168037701 Upstream 63bp
chr15 43692416 43692416 1 + C T PAAD 43692414 + 43692394 43692434 41 TGGATAATCTTCAGTACTATCTCCAGGTCTGTGCTAAGAGA TGGATAATCTTCAGTACTATCTTCAGGTCTGTGCTAAGAGA < 41bp 0.79950028110868 0.524949884769614 0.92552507 0.25911695 prediction 0.549100792678132 Functional Loss - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43692414 chr15:43692416 synonymous SNV . 0 23 hm5C_associated_SNPs_58982 0 0 1 0 1 TUBGCP4 chr15:43692419 5'GT 43692419 Upstream 4bp
chr11 113846067 113846067 1 + A C STAD 113846063 + 113846043 113846083 41 TCGCTATGCTGCTGTGGGTCCAGCAGGCGCTGCTCGCCTTG TCGCTATGCTGCTGTGGGTCCAGCCGGCGCTGCTCGCCTTG < 41bp 0.902944779165584 0.628413117138773 0.6220109 0.534191 prediction 0.549063324053622 Functional Loss - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113846063 chr11:113846067 nonsynonymous SNV 0.012 0 25 hm5C_associated_SNPs_58984 0 0 0 0 1 HTR3A chr11:113846114 5'GT 113846114 Upstream 48bp
chr22 18978303 18978303 1 + G T rs61736230 18978300 + 18978280 18978320 41 ACACGCCCAGGGCCTGGCACCGAGGGGGAGGCCCCGATCAG ACACGCCCAGGGCCTGGCACCGATGGGGAGGCCCCGATCAG < 41bp 0.910386465189878 0.635868607345427 0.9127922 0.26836446 prediction 0.549035715688901 Functional Loss - DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18978300 chr22:18978303 . . 0 24 hm5C_associated_SNPs_58987 0 0 0 0 1 DGCR5 chr22:18978233 3'AG 18978233 Downstream 71bp
chr17 4442824 4442824 1 - T A KIRC 4442828 - 4442808 4442848 41 AAAGGGGGTCTTGGGCAAATCACCACTGTCCGCGCTGGCAC AAAGGGGGTCTTGGGCAAATCACCTCTGTCCGCGCTGGCAC < 41bp 0.840974655975783 0.566464383810174 0.79279315 0.28884056 prediction 0.549020544331218 Functional Loss - MYBBP1A ENSG00000132382 CDS Human protein_coding chr17:4442828 chr17:4442824 synonymous SNV . 0 25 hm5C_associated_SNPs_58988 0 0 1 0 1 MYBBP1A chr17:4442734 5'GT 4442734 Upstream 91bp
chr2 25355881 25355881 1 + G C rs2304571 25355880 + 25355860 25355900 41 GGCGGTGGACACAGGCAGGACGGGGTGAGCCACCAATCTCC GGCGGTGGACACAGGCAGGACCGGGTGAGCCACCAATCTCC < 41bp 0.825695231636679 0.551218148939641 0.8928511 0.878865 prediction 0.548954165394077 Functional Loss - EFR3B ENSG00000084710 CDS Human protein_coding chr2:25355880 chr2:25355881 synonymous SNV . 0 22 hm5C_associated_SNPs_58995 0 0 0 0 1 EFR3B chr2:25355883 5'GT 25355883 Upstream 3bp
chr17 72350665 72350665 1 + G T CESC 72350663 + 72350643 72350683 41 TGGAGGCAAAGAGAAGGAAGCGGAGGTCCCGATCCTTCGAG TGGAGGCAAAGAGAAGGAAGCGTAGGTCCCGATCCTTCGAG < 41bp 0.774467732950059 0.424331671362749 0.9164055 0.8448219 prediction 0.548935465900118 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72350663 chr17:72350665 synonymous SNV . 0 23 hm5C_associated_SNPs_58996 0 0 0 0 1 KIF19 chr17:72350698 5'GT 72350698 Upstream 34bp
chr17 45730222 45730222 1 + C T UCEC 45730220 + 45730200 45730240 41 GCTTGCTATTGATGCTAATGCTCGACGAGAAGTCAAGAACT GCTTGCTATTGATGCTAATGCTTGACGAGAAGTCAAGAACT < 41bp 0.780272364842283 0.505809868235716 0.21958753 0.24896395 prediction 0.548924993213136 Functional Loss - KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45730220 chr17:45730222 stopgain 1.000 1 23 hm5C_associated_SNPs_58997 0 0 1 0 1 KPNB1 chr17:45730242 5'GT 45730242 Upstream 21bp
chr1 38158437 38158437 1 + G T THYM 38158435 + 38158415 38158455 41 GGCGGAAGCTCGCCTCCTTTCTGAAAGACTTCGACCGTGAA GGCGGAAGCTCGCCTCCTTTCTTAAAGACTTCGACCGTGAA < 41bp 0.863728266976454 0.589266457245724 0.64612496 0.15992215 prediction 0.54892361946146 Functional Loss - CDCA8 ENSG00000134690 CDS Human protein_coding chr1:38158435 chr1:38158437 synonymous SNV . 0 23 hm5C_associated_SNPs_58998 0 0 1 0 2 CDCA8 chr1:38158348 3'AG 38158348 Downstream 90bp
chr1 38158437 38158437 1 + G T THYM 38158435 + 38158415 38158455 41 GGCGGAAGCTCGCCTCCTTTCTGAAAGACTTCGACCGTGAA GGCGGAAGCTCGCCTCCTTTCTTAAAGACTTCGACCGTGAA < 41bp 0.863728266976454 0.589266457245724 0.64612496 0.15992215 prediction 0.54892361946146 Functional Loss - CDCA8 ENSG00000134690 CDS Human protein_coding chr1:38158435 chr1:38158437 synonymous SNV . 0 23 hm5C_associated_SNPs_58998 0 0 1 0 2 CDCA8 chr1:38158456 5'GT 38158456 Upstream 20bp
chr17 61621389 61621389 1 + G T LUAD 61621387 + 61621367 61621407 41 TGCCAGGGTCTCCCCATGAGCTGGGGCCCCAGTTCCCCTCT TGCCAGGGTCTCCCCATGAGCTTGGGCCCCAGTTCCCCTCT < 41bp 0.877010667927139 0.602557173570246 0.87571955 0.18210065 prediction 0.548906988713785 Functional Loss - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61621387 chr17:61621389 synonymous SNV . 0 23 hm5C_associated_SNPs_59000 0 0 0 0 1 KCNH6 chr17:61621480 5'GT 61621480 Upstream 92bp
chr7 105645021 105645021 1 + G T BLCA 105645018 + 105644998 105645038 41 GACAAAATCCCACCATTTCCCTGGAAGTTCTAGTGAAGGAC GACAAAATCCCACCATTTCCCTGTAAGTTCTAGTGAAGGAC < 41bp 0.774450522775072 0.398078424184009 0.10077444 0.08031678 prediction 0.548901045550144 Functional Loss - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105645018 chr7:105645021 stopgain 0.953 0 24 hm5C_associated_SNPs_59001 0 0 0 1 1 CDHR3 chr7:105644944 3'AG 105644944 Downstream 78bp
chr19 56487536 56487536 1 + G T LGG 56487533 + 56487513 56487553 41 ACTTGACCTTTAATTGCTGTCAGGATATGATCTCTGCGCTC ACTTGACCTTTAATTGCTGTCAGTATATGATCTCTGCGCTC < 41bp 0.774439858607657 0.395772302987389 0.9174298 0.16046634 prediction 0.548879717215314 Functional Loss - NLRP8 ENSG00000179709 CDS Human protein_coding chr19:56487533 chr19:56487536 nonsynonymous SNV 0.037 0 24 hm5C_associated_SNPs_59002 0 0 0 0 1 NLRP8 chr19:56487499 3'AG 56487499 Downstream 38bp
chr20 31630656 31630656 1 + C T UCEC 31630654 + 31630634 31630674 41 CTGGCTTCATCACCAGCTATCTCGAAGAAGCCTACATCCCA CTGGCTTCATCACCAGCTATCTTGAAGAAGCCTACATCCCA < 41bp 0.777281519990063 0.502848693933775 0.4374227 0.1722013 prediction 0.548865652112576 Functional Loss - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31630654 chr20:31630656 synonymous SNV . 0 23 hm5C_associated_SNPs_59005 0 0 0 0 2 BPIFB6 chr20:31630621 3'AG 31630621 Downstream 36bp
chr20 31630656 31630656 1 + C T UCEC 31630654 + 31630634 31630674 41 CTGGCTTCATCACCAGCTATCTCGAAGAAGCCTACATCCCA CTGGCTTCATCACCAGCTATCTTGAAGAAGCCTACATCCCA < 41bp 0.777281519990063 0.502848693933775 0.4374227 0.1722013 prediction 0.548865652112576 Functional Loss - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31630654 chr20:31630656 synonymous SNV . 0 23 hm5C_associated_SNPs_59005 0 0 0 0 2 BPIFB6 chr20:31630684 5'GT 31630684 Upstream 29bp
chr7 50175711 50175711 1 + G T UCEC 50175708 + 50175688 50175728 41 TTTTAGATGGTTGGTGAGCTCTGGGACAGATTTCAAACAAG TTTTAGATGGTTGGTGAGCTCTGTGACAGATTTCAAACAAG < 41bp 0.774422352171879 0.400764789341911 0.07868174 0.014829248 prediction 0.548844704343758 Functional Loss - C7orf72 ENSG00000164500 CDS Human protein_coding chr7:50175708 chr7:50175711 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_59006 0 0 0 0 2 C7orf72 chr7:50175694 3'AG 50175694 Downstream 18bp
chr7 50175711 50175711 1 + G T UCEC 50175708 + 50175688 50175728 41 TTTTAGATGGTTGGTGAGCTCTGGGACAGATTTCAAACAAG TTTTAGATGGTTGGTGAGCTCTGTGACAGATTTCAAACAAG < 41bp 0.774422352171879 0.400764789341911 0.07868174 0.014829248 prediction 0.548844704343758 Functional Loss - C7orf72 ENSG00000164500 CDS Human protein_coding chr7:50175708 chr7:50175711 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_59006 0 0 0 0 2 C7orf72 chr7:50175761 5'GT 50175761 Upstream 51bp
chr13 25276123 25276123 1 + G T UCEC 25276120 + 25276100 25276140 41 ATCACAGCCAAAGCTATTGCCAAGAGTGTGGGGATCATTTC ATCACAGCCAAAGCTATTGCCAATAGTGTGGGGATCATTTC < 41bp 0.774404081174549 0.385669363044972 0.6840934 0.13434649 prediction 0.548808162349099 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25276120 chr13:25276123 nonsynonymous SNV 0.045 3 24 hm5C_associated_SNPs_59007 0 0 0 0 2 ATP12A chr13:25276073 3'AG 25276073 Downstream 51bp
chr13 25276123 25276123 1 + G T UCEC 25276120 + 25276100 25276140 41 ATCACAGCCAAAGCTATTGCCAAGAGTGTGGGGATCATTTC ATCACAGCCAAAGCTATTGCCAATAGTGTGGGGATCATTTC < 41bp 0.774404081174549 0.385669363044972 0.6840934 0.13434649 prediction 0.548808162349099 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25276120 chr13:25276123 nonsynonymous SNV 0.045 3 24 hm5C_associated_SNPs_59007 0 0 0 0 2 ATP12A chr13:25276209 5'GT 25276209 Upstream 87bp
chr16 19710899 19710899 1 + A C SKCM 19710895 + 19710875 19710915 41 GCCCATGGGGACCTACGCAACAACAAGCTCAACCAGCTCTC GCCCATGGGGACCTACGCAACAACCAGCTCAACCAGCTCTC < 41bp 0.774393143565048 0.355348525862241 0.027056038 0.04026586 prediction 0.548786287130095 Functional Loss - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19710895 chr16:19710899 nonsynonymous SNV 0.980 1 25 hm5C_associated_SNPs_59011 0 0 1 0 2 C16orf62 chr16:19710824 3'AG 19710824 Downstream 76bp
chr16 19710899 19710899 1 + A C SKCM 19710895 + 19710875 19710915 41 GCCCATGGGGACCTACGCAACAACAAGCTCAACCAGCTCTC GCCCATGGGGACCTACGCAACAACCAGCTCAACCAGCTCTC < 41bp 0.774393143565048 0.355348525862241 0.027056038 0.04026586 prediction 0.548786287130095 Functional Loss - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19710895 chr16:19710899 nonsynonymous SNV 0.980 1 25 hm5C_associated_SNPs_59011 0 0 1 0 2 C16orf62 chr16:19710970 5'GT 19710970 Upstream 72bp
chr14 68114822 68114822 1 + C T BLCA 68114820 + 68114800 68114840 41 TGCATTTGACCCTACACTGGCTCCAGCCACAGGAACTCCTG TGCATTTGACCCTACACTGGCTTCAGCCACAGGAACTCCTG < 41bp 0.774385458489179 0.478708686299395 0.47139105 0.18550172 prediction 0.548770916978359 Functional Loss - ARG2 ENSG00000081181 CDS Human protein_coding chr14:68114820 chr14:68114822 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_59012 0 0 1 0 2 ARG2 chr14:68114764 3'AG 68114764 Downstream 59bp
chr14 68114822 68114822 1 + C T BLCA 68114820 + 68114800 68114840 41 TGCATTTGACCCTACACTGGCTCCAGCCACAGGAACTCCTG TGCATTTGACCCTACACTGGCTTCAGCCACAGGAACTCCTG < 41bp 0.774385458489179 0.478708686299395 0.47139105 0.18550172 prediction 0.548770916978359 Functional Loss - ARG2 ENSG00000081181 CDS Human protein_coding chr14:68114820 chr14:68114822 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_59012 0 0 1 0 2 ARG2 chr14:68114900 5'GT 68114900 Upstream 79bp
chrX 55248257 55248257 1 + G T GBM 55248254 + 55248234 55248274 41 AGGAACCACCAACTGATAATCAGGGTATTGCACCTAGTGGG AGGAACCACCAACTGATAATCAGTGTATTGCACCTAGTGGG < 41bp 0.908032014109299 0.63364806884588 0.9386727 0.77380747 prediction 0.548767890526837 Functional Loss - PAGE5 ENSG00000158639 CDS Human protein_coding chrX:55248254 chrX:55248257 nonsynonymous SNV 0.005 3 24 hm5C_associated_SNPs_59013 0 0 0 0 2 PAGE5 chrX:55248200 3'AG 55248200 Downstream 58bp
chrX 55248257 55248257 1 + G T GBM 55248254 + 55248234 55248274 41 AGGAACCACCAACTGATAATCAGGGTATTGCACCTAGTGGG AGGAACCACCAACTGATAATCAGTGTATTGCACCTAGTGGG < 41bp 0.908032014109299 0.63364806884588 0.9386727 0.77380747 prediction 0.548767890526837 Functional Loss - PAGE5 ENSG00000158639 CDS Human protein_coding chrX:55248254 chrX:55248257 nonsynonymous SNV 0.005 3 24 hm5C_associated_SNPs_59013 0 0 0 0 2 PAGE5 chrX:55248308 5'GT 55248308 Upstream 52bp
chr6 160212129 160212129 1 + G C OV 160212128 + 160212108 160212148 41 GAAAGAGCGGGGCTGGCGGACGGTGTTTCCCTCCCGTGAGT GAAAGAGCGGGGCTGGCGGACCGTGTTTCCCTCCCGTGAGT < 41bp 0.774377215134916 0.472642533191599 0.5784615 0.22932291 prediction 0.548754430269832 Functional Loss - MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160212128 chr6:160212129 synonymous SNV . 0 22 hm5C_associated_SNPs_59014 0 0 1 0 1 MRPL18 chr6:160212158 5'GT 160212158 Upstream 30bp
chr7 2638184 2638184 1 + G T LUAD 2638181 + 2638161 2638201 41 TTCCAGCGAGGAGGGGCTCCCGCGGCCCCGCTCCCCCTGCT TTCCAGCGAGGAGGGGCTCCCGCTGCCCCGCTCCCCCTGCT < 41bp 0.901999154764935 0.627655416862011 0.89745545 0.3788188 prediction 0.548687475805848 Functional Loss - IQCE ENSG00000106012 CDS Human protein_coding chr7:2638181 chr7:2638184 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_59019 0 0 0 0 2 IQCE chr7:2638099 3'AG 2638099 Downstream 86bp
chr7 2638184 2638184 1 + G T LUAD 2638181 + 2638161 2638201 41 TTCCAGCGAGGAGGGGCTCCCGCGGCCCCGCTCCCCCTGCT TTCCAGCGAGGAGGGGCTCCCGCTGCCCCGCTCCCCCTGCT < 41bp 0.901999154764935 0.627655416862011 0.89745545 0.3788188 prediction 0.548687475805848 Functional Loss - IQCE ENSG00000106012 CDS Human protein_coding chr7:2638181 chr7:2638184 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_59019 0 0 0 0 2 IQCE chr7:2638266 5'GT 2638266 Upstream 83bp
chr22 41969746 41969746 1 + G T UCEC 41969743 + 41969723 41969763 41 GGCCATGGCTTCATCACCCCCGAGAACGGGTCCGAGGACAT GGCCATGGCTTCATCACCCCCGATAACGGGTCCGAGGACAT < 41bp 0.774337447716302 0.384307989558055 0.35548592 0.049804896 prediction 0.548674895432603 Functional Loss - CSDC2 ENSG00000172346 CDS Human protein_coding chr22:41969743 chr22:41969746 nonsynonymous SNV 0.890 1 24 hm5C_associated_SNPs_59021 0 0 0 0 2 CSDC2 chr22:41969659 3'AG 41969659 Downstream 88bp
chr22 41969746 41969746 1 + G T UCEC 41969743 + 41969723 41969763 41 GGCCATGGCTTCATCACCCCCGAGAACGGGTCCGAGGACAT GGCCATGGCTTCATCACCCCCGATAACGGGTCCGAGGACAT < 41bp 0.774337447716302 0.384307989558055 0.35548592 0.049804896 prediction 0.548674895432603 Functional Loss - CSDC2 ENSG00000172346 CDS Human protein_coding chr22:41969743 chr22:41969746 nonsynonymous SNV 0.890 1 24 hm5C_associated_SNPs_59021 0 0 0 0 2 CSDC2 chr22:41969781 5'GT 41969781 Upstream 36bp
chr4 71068479 71068479 1 + G T LUSC 71068477 + 71068457 71068497 41 TTCTCATTCTCTGTAGTCAACAGGAGAAGAGATACCATATT TTCTCATTCTCTGTAGTCAACATGAGAAGAGATACCATATT < 41bp 0.774324208660335 0.458136456874315 0.8595737 0.23225328 prediction 0.54864841732067 Functional Loss - ODAM ENSG00000109205 CDS Human protein_coding chr4:71068477 chr4:71068479 stopgain 0.005 0 23 hm5C_associated_SNPs_59023 0 0 0 0 1 ODAM chr4:71068473 3'AG 71068473 Downstream 7bp
chr18 77102294 77102294 1 + C T SKCM 77102292 + 77102272 77102312 41 GGATGCTAACAGGCGATAAACTCGAGACAGCTACCTGCATT GGATGCTAACAGGCGATAAACTTGAGACAGCTACCTGCATT < 41bp 0.77431656823212 0.4974466717436 0.9092891 0.8505726 prediction 0.548633136464241 Functional Loss - ATP9B ENSG00000166377 CDS Human protein_coding chr18:77102292 chr18:77102294 synonymous SNV . 0 23 hm5C_associated_SNPs_59025 0 0 0 0 2 ATP9B chr18:77102268 3'AG 77102268 Downstream 27bp
chr18 77102294 77102294 1 + C T SKCM 77102292 + 77102272 77102312 41 GGATGCTAACAGGCGATAAACTCGAGACAGCTACCTGCATT GGATGCTAACAGGCGATAAACTTGAGACAGCTACCTGCATT < 41bp 0.77431656823212 0.4974466717436 0.9092891 0.8505726 prediction 0.548633136464241 Functional Loss - ATP9B ENSG00000166377 CDS Human protein_coding chr18:77102292 chr18:77102294 synonymous SNV . 0 23 hm5C_associated_SNPs_59025 0 0 0 0 2 ATP9B chr18:77102366 5'GT 77102366 Upstream 73bp
chr11 279846 279846 1 + G C rs148036504 279842 + 279822 279862 41 TTTCCCTTCCAGGGCTCGGGCTCGGCTCCGGGACGCTGCTC TTTCCCTTCCAGGGCTCGGGCTCGCCTCCGGGACGCTGCTC < 41bp 0.785436414853737 0.511156027765357 0.11187807 0.089033574 prediction 0.548560774176761 Functional Loss - NLRP6 ENSG00000174885 CDS Human protein_coding chr11:279842 chr11:279846 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_59029 0 0 0 0 2 NLRP6 chr11:279834 3'AG 279834 Downstream 13bp
chr11 279846 279846 1 + G C rs148036504 279842 + 279822 279862 41 TTTCCCTTCCAGGGCTCGGGCTCGGCTCCGGGACGCTGCTC TTTCCCTTCCAGGGCTCGGGCTCGCCTCCGGGACGCTGCTC < 41bp 0.785436414853737 0.511156027765357 0.11187807 0.089033574 prediction 0.548560774176761 Functional Loss - NLRP6 ENSG00000174885 CDS Human protein_coding chr11:279842 chr11:279846 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_59029 0 0 0 0 2 NLRP6 chr11:279872 5'GT 279872 Upstream 27bp
chr3 50252882 50252882 1 + G T LGG 50252880 + 50252860 50252900 41 CCACCTGCTACTCAAGTCCTCAGGGGTCGTGGGTGAGCCTC CCACCTGCTACTCAAGTCCTCATGGGTCGTGGGTGAGCCTC < 41bp 0.8814664859656 0.607197446185755 0.95002687 0.8477266 prediction 0.54853807955969 Functional Loss - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50252880 chr3:50252882 . 0.995 2 23 hm5C_associated_SNPs_59030 0 0 1 0 2 SLC38A3 chr3:50252818 3'AG 50252818 Downstream 65bp
chr3 50252882 50252882 1 + G T LGG 50252880 + 50252860 50252900 41 CCACCTGCTACTCAAGTCCTCAGGGGTCGTGGGTGAGCCTC CCACCTGCTACTCAAGTCCTCATGGGTCGTGGGTGAGCCTC < 41bp 0.8814664859656 0.607197446185755 0.95002687 0.8477266 prediction 0.54853807955969 Functional Loss - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50252880 chr3:50252882 . 0.995 2 23 hm5C_associated_SNPs_59030 0 0 1 0 2 SLC38A3 chr3:50252891 5'GT 50252891 Upstream 10bp
chr6 100056707 100056707 1 + G T UCEC 100056704 + 100056684 100056724 41 TCCGGGCAGCCAGAAACTCCCAGGAACAGACTCTGGAAGCT TCCGGGCAGCCAGAAACTCCCAGTAACAGACTCTGGAAGCT < 41bp 0.902757675566832 0.628510938758718 0.90049565 0.5308751 prediction 0.548493473616227 Functional Loss - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100056704 chr6:100056707 stopgain 1.000 0 24 hm5C_associated_SNPs_59033 0 0 0 0 2 PRDM13 chr6:100056617 3'AG 100056617 Downstream 91bp
chr6 100056707 100056707 1 + G T UCEC 100056704 + 100056684 100056724 41 TCCGGGCAGCCAGAAACTCCCAGGAACAGACTCTGGAAGCT TCCGGGCAGCCAGAAACTCCCAGTAACAGACTCTGGAAGCT < 41bp 0.902757675566832 0.628510938758718 0.90049565 0.5308751 prediction 0.548493473616227 Functional Loss - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100056704 chr6:100056707 stopgain 1.000 0 24 hm5C_associated_SNPs_59033 0 0 0 0 2 PRDM13 chr6:100056748 5'GT 100056748 Upstream 42bp
chr9 37486042 37486042 1 + G C rs147983938 37486041 + 37486021 37486061 41 GTGCTTGGCGGACAGACAGGCGAGATGGCGGCGGAGGTGTT GTGCTTGGCGGACAGACAGGCCAGATGGCGGCGGAGGTGTT < 41bp 0.806726621675233 0.532484746279692 0.7341372 0.3802246 prediction 0.548483750791082 Functional Loss - POLR1E ENSG00000137054 UTR5 Human protein_coding chr9:37486041 chr9:37486042 . . 0 22 hm5C_associated_SNPs_59034 0 0 1 0 1 POLR1E chr9:37486120 5'GT 37486120 Upstream 79bp
chr1 60294516 60294516 1 + A C CESC 60294512 + 60294492 60294532 41 AAAGAGGATGTTGGGGACAACTGGAGAATAAAGGTATGCAG AAAGAGGATGTTGGGGACAACTGGCGAATAAAGGTATGCAG < 41bp 0.90643484462129 0.632195981735809 0.8387997 0.7721791 prediction 0.548477725770961 Functional Loss - HOOK1 ENSG00000134709 CDS Human protein_coding chr1:60294512 chr1:60294516 synonymous SNV . 0 25 hm5C_associated_SNPs_59035 0 0 1 3 2 HOOK1 chr1:60294452 3'AG 60294452 Downstream 65bp
chr1 60294516 60294516 1 + A C CESC 60294512 + 60294492 60294532 41 AAAGAGGATGTTGGGGACAACTGGAGAATAAAGGTATGCAG AAAGAGGATGTTGGGGACAACTGGCGAATAAAGGTATGCAG < 41bp 0.90643484462129 0.632195981735809 0.8387997 0.7721791 prediction 0.548477725770961 Functional Loss - HOOK1 ENSG00000134709 CDS Human protein_coding chr1:60294512 chr1:60294516 synonymous SNV . 0 25 hm5C_associated_SNPs_59035 0 0 1 3 2 HOOK1 chr1:60294524 5'GT 60294524 Upstream 9bp
chr2 107002773 107002773 1 + G T STAD 107002771 + 107002751 107002791 41 TGGATGACTATGTAAATGCCCAGGGGGCTTCACTGTTCAGT TGGATGACTATGTAAATGCCCATGGGGCTTCACTGTTCAGT < 41bp 0.774231747469581 0.464516424023425 0.72448575 0.039571375 prediction 0.548463494939163 Functional Loss - PLGLA ENSG00000240935 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:107002771 chr2:107002773 . . 0 23 hm5C_associated_SNPs_59037 0 0 0 0 2 PLGLA chr2:107002736 3'AG 107002736 Downstream 38bp
chr2 107002773 107002773 1 + G T STAD 107002771 + 107002751 107002791 41 TGGATGACTATGTAAATGCCCAGGGGGCTTCACTGTTCAGT TGGATGACTATGTAAATGCCCATGGGGCTTCACTGTTCAGT < 41bp 0.774231747469581 0.464516424023425 0.72448575 0.039571375 prediction 0.548463494939163 Functional Loss - PLGLA ENSG00000240935 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:107002771 chr2:107002773 . . 0 23 hm5C_associated_SNPs_59037 0 0 0 0 2 PLGLA chr2:107002871 5'GT 107002871 Upstream 99bp
chr15 90996086 90996086 1 + C T COAD 90996084 + 90996064 90996104 41 CTGTTTTGGAACTGATGAATCCCGAAGCCCAGCTGCCCCAG CTGTTTTGGAACTGATGAATCCTGAAGCCCAGCTGCCCCAG < 41bp 0.774231446908977 0.496064751009625 0.78281754 0.22559652 prediction 0.548462893817954 Functional Loss - IQGAP1 ENSG00000140575 CDS Human protein_coding chr15:90996084 chr15:90996086 synonymous SNV . 0 23 hm5C_associated_SNPs_59038 0 0 1 0 2 IQGAP1 chr15:90996007 3'AG 90996007 Downstream 80bp
chr15 90996086 90996086 1 + C T COAD 90996084 + 90996064 90996104 41 CTGTTTTGGAACTGATGAATCCCGAAGCCCAGCTGCCCCAG CTGTTTTGGAACTGATGAATCCTGAAGCCCAGCTGCCCCAG < 41bp 0.774231446908977 0.496064751009625 0.78281754 0.22559652 prediction 0.548462893817954 Functional Loss - IQGAP1 ENSG00000140575 CDS Human protein_coding chr15:90996084 chr15:90996086 synonymous SNV . 0 23 hm5C_associated_SNPs_59038 0 0 1 0 2 IQGAP1 chr15:90996170 5'GT 90996170 Upstream 85bp
chr18 14179557 14179557 1 + G C rs142779176 14179556 + 14179536 14179576 41 AGATGGAGCGCTGTCTGGCGCGCAGGAGCGGAGACCTTGAC AGATGGAGCGCTGTCTGGCGCCCAGGAGCGGAGACCTTGAC < 41bp 0.793003177431183 0.518782346060041 0.33193073 0.08007446 prediction 0.548441662742282 Functional Loss - ANKRD20A5P ENSG00000186481 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr18:14179556 chr18:14179557 . . 0 22 hm5C_associated_SNPs_59040 0 0 1 0 1 ANKRD20A5P chr18:14179596 5'GT 14179596 Upstream 40bp
chr5 173337558 173337558 1 + G T OV 173337556 + 173337536 173337576 41 GGACATTCGACATGCACTCACTGGAGAGTTCACTCATTGAC GGACATTCGACATGCACTCACTTGAGAGTTCACTCATTGAC < 41bp 0.77421893348855 0.452112839382537 0.13441634 0.06319043 prediction 0.5484378669771 Functional Loss - CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173337556 chr5:173337558 synonymous SNV . 0 23 hm5C_associated_SNPs_59041 0 0 0 0 2 CPEB4 chr5:173337526 3'AG 173337526 Downstream 33bp
chr5 173337558 173337558 1 + G T OV 173337556 + 173337536 173337576 41 GGACATTCGACATGCACTCACTGGAGAGTTCACTCATTGAC GGACATTCGACATGCACTCACTTGAGAGTTCACTCATTGAC < 41bp 0.77421893348855 0.452112839382537 0.13441634 0.06319043 prediction 0.5484378669771 Functional Loss - CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173337556 chr5:173337558 synonymous SNV . 0 23 hm5C_associated_SNPs_59041 0 0 0 0 2 CPEB4 chr5:173337607 5'GT 173337607 Upstream 50bp
chr1 20669102 20669102 1 + G T CESC 20669099 + 20669079 20669119 41 ACAGCCGAAGCCCTGGAGATCTGGGTAAGTGACCACAGGGT ACAGCCGAAGCCCTGGAGATCTGTGTAAGTGACCACAGGGT < 41bp 0.77419734720512 0.384739063522822 0.7474743 0.23553458 prediction 0.54839469441024 Functional Loss - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20669099 chr1:20669102 stopgain 0.230 0 24 hm5C_associated_SNPs_59043 0 0 0 0 1 VWA5B1 chr1:20669102 5'GT 20669102 Upstream 1bp
chr16 55690875 55690875 1 + G T SARC 55690873 + 55690853 55690893 41 CCCTACCTCTGCTACAAGAACGGCGGCGGTGAGCGTGGGGT CCCTACCTCTGCTACAAGAACGTCGGCGGTGAGCGTGGGGT < 41bp 0.774191436291519 0.424290676140718 0.69353324 0.40724647 prediction 0.548382872583039 Functional Loss - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55690873 chr16:55690875 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_59044 0 0 0 0 1 SLC6A2 chr16:55690880 5'GT 55690880 Upstream 6bp
chr9 116021039 116021039 1 + C T UCEC 116021037 + 116021017 116021057 41 CTATGAAGGACTCAAGATAGCCCGAGAGAGCCTGCTGCGTA CTATGAAGGACTCAAGATAGCCTGAGAGAGCCTGCTGCGTA < 41bp 0.774180613840751 0.496340453516357 0.12616563 0.23803228 prediction 0.548361227681502 Functional Loss - SLC31A1 ENSG00000136868 CDS Human protein_coding chr9:116021037 chr9:116021039 stopgain 1.000 1 23 hm5C_associated_SNPs_59045 0 0 1 0 1 SLC31A1 chr9:116020974 3'AG 116020974 Downstream 66bp
chr19 57796025 57796025 1 + G T HNSC 57796023 + 57796003 57796043 41 GTGGAGGTGATGCTGGAGACCTGTGGGCTTCTGGTCGCACT GTGGAGGTGATGCTGGAGACCTTTGGGCTTCTGGTCGCACT < 41bp 0.77417418521794 0.432477346084866 0.2779048 0.2629731 prediction 0.54834837043588 Functional Loss - ZNF460 ENSG00000197714 CDS Human protein_coding chr19:57796023 chr19:57796025 nonsynonymous SNV 0.789 0 23 hm5C_associated_SNPs_59046 0 0 1 0 1 ZNF460 chr19:57796045 5'GT 57796045 Upstream 21bp
chr5 256514 256514 1 + G C THCA 256513 + 256493 256533 41 GGCTGACTGTGCCACCGTCCCGCCAGCCATTCGCTCCTACT GGCTGACTGTGCCACCGTCCCCCCAGCCATTCGCTCCTACT < 41bp 0.818473258624184 0.544312394664949 0.17957914 0.119767725 prediction 0.54832172791847 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:256513 chr5:256514 synonymous SNV . 0 22 hm5C_associated_SNPs_59049 3 0 1 0 1 SDHA chr5:256449 3'AG 256449 Downstream 66bp
chr3 39431045 39431045 1 + C T SKCM 39431043 + 39431023 39431063 41 TCAGTGGGACCTGCTCTACCCTCCTTTTCCAACCTCTGGAT TCAGTGGGACCTGCTCTACCCTTCTTTTCCAACCTCTGGAT < 41bp 0.780261037570359 0.506134730631641 0.028642178 0.049603254 prediction 0.548252613877436 Functional Loss - SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431043 chr3:39431045 synonymous SNV . 0 23 hm5C_associated_SNPs_59051 0 0 1 0 2 SLC25A38 chr3:39430986 3'AG 39430986 Downstream 60bp
chr3 39431045 39431045 1 + C T SKCM 39431043 + 39431023 39431063 41 TCAGTGGGACCTGCTCTACCCTCCTTTTCCAACCTCTGGAT TCAGTGGGACCTGCTCTACCCTTCTTTTCCAACCTCTGGAT < 41bp 0.780261037570359 0.506134730631641 0.028642178 0.049603254 prediction 0.548252613877436 Functional Loss - SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431043 chr3:39431045 synonymous SNV . 0 23 hm5C_associated_SNPs_59051 0 0 1 0 2 SLC25A38 chr3:39431107 5'GT 39431107 Upstream 63bp
chr12 107349810 107349810 1 + G T rs11837205 107349807 + 107349787 107349827 41 GCGCCGGCCCGCTCACTCCGCCCGGCCCCAGCCCTAGCGCT GCGCCGGCCCGCTCACTCCGCCCTGCCCCAGCCCTAGCGCT < 41bp 0.801505911520591 0.52738434988283 0.1908103 0.07560751 prediction 0.548243123275522 Functional Loss - TMEM263 ENSG00000151135 UTR5 Human protein_coding chr12:107349807 chr12:107349810 . . 0 24 hm5C_associated_SNPs_59052 0 0 1 0 1 TMEM263 chr12:107349843 5'GT 107349843 Upstream 34bp
chr11 57235562 57235562 1 + A T UCEC 57235558 + 57235538 57235578 41 AGGAGAACAGCCTGCTCCACCTACAGGTGAGCCTGCCCTGC AGGAGAACAGCCTGCTCCACCTACTGGTGAGCCTGCCCTGC < 41bp 0.774113816630236 0.453436664649208 0.3402561 0.20138326 prediction 0.548227633260472 Functional Loss - RTN4RL2 ENSG00000186907 CDS Human protein_coding chr11:57235558 chr11:57235562 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_59056 0 0 0 0 1 RTN4RL2 chr11:57235563 5'GT 57235563 Upstream 2bp
chr19 3527673 3527673 1 + C T SKCM 3527671 + 3527651 3527691 41 CGGAAACCCACCCGCAAGATCTCCAAGATCCCCTTCAAGGT CGGAAACCCACCCGCAAGATCTTCAAGATCCCCTTCAAGGT < 41bp 0.774233169245279 0.500123188840033 0.96218514 0.12781179 prediction 0.548219960810493 Functional Loss - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3527671 chr19:3527673 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_59058 0 0 1 0 1 FZR1 chr19:3527629 3'AG 3527629 Downstream 45bp
chr17 76235340 76235340 1 + G T COAD 76235338 + 76235318 76235358 41 TCTGTGGTCATCTGAGTCCCCAGCAGGTGGGAGGGAGGTAA TCTGTGGTCATCTGAGTCCCCATCAGGTGGGAGGGAGGTAA < 41bp 0.854406463962865 0.5803046849323 0.7338691 0.37763405 prediction 0.548203558061129 Functional Loss - TMEM235 ENSG00000204278 CDS Human protein_coding chr17:76235338 chr17:76235340 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_59059 0 0 0 0 1 TMEM235 chr17:76235354 5'GT 76235354 Upstream 15bp
chr1 177242650 177242650 1 + G T SARC 177242648 + 177242628 177242668 41 CCGAGACCAGGACCGGTCCTCTGGGCTGCAGCAACTATGAC CCGAGACCAGGACCGGTCCTCTTGGCTGCAGCAACTATGAC < 41bp 0.774075053606108 0.432982497188794 0.4221868 0.049781114 prediction 0.548150107212215 Functional Loss - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177242648 chr1:177242650 synonymous SNV . 0 23 hm5C_associated_SNPs_59062 0 0 0 0 2 BRINP2 chr1:177242624 3'AG 177242624 Downstream 27bp
chr1 177242650 177242650 1 + G T SARC 177242648 + 177242628 177242668 41 CCGAGACCAGGACCGGTCCTCTGGGCTGCAGCAACTATGAC CCGAGACCAGGACCGGTCCTCTTGGCTGCAGCAACTATGAC < 41bp 0.774075053606108 0.432982497188794 0.4221868 0.049781114 prediction 0.548150107212215 Functional Loss - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177242648 chr1:177242650 synonymous SNV . 0 23 hm5C_associated_SNPs_59062 0 0 0 0 2 BRINP2 chr1:177242729 5'GT 177242729 Upstream 80bp
chr3 127379981 127379981 1 + G T LUAD 127379978 + 127379958 127379998 41 CAGGCAGCTGAAGCTCAATCCAGGATACCCTGGGATTCTAC CAGGCAGCTGAAGCTCAATCCAGTATACCCTGGGATTCTAC < 41bp 0.774073444805674 0.386870470402437 0.8311873 0.29542732 prediction 0.548146889611349 Functional Loss - PODXL2 ENSG00000114631 CDS Human protein_coding chr3:127379978 chr3:127379981 nonsynonymous SNV 0.106 0 24 hm5C_associated_SNPs_59063 0 0 1 0 1 PODXL2 chr3:127380002 5'GT 127380002 Upstream 22bp
chr11 117988654 117988654 1 + G C rs7123209 117988650 + 117988630 117988670 41 GCTGCTGCCCCTTTGCAGTGCTGGGAGCCGCTTCCTTCCTG GCTGCTGCCCCTTTGCAGTGCTGGCAGCCGCTTCCTTCCTG < 41bp 0.813631495636758 0.539566982729055 0.8229356 0.17674512 prediction 0.548129025815406 Functional Loss - TMPRSS4 ENSG00000137648 UTR3 Human protein_coding chr11:117988650 chr11:117988654 . . 0 25 hm5C_associated_SNPs_59067 0 0 0 0 1 TMPRSS4 chr11:117988617 3'AG 117988617 Downstream 38bp
chr1 161697121 161697121 1 + G T COAD 161697119 + 161697099 161697139 41 GGTAATAGGCCGCTTTCCTTCAGAAAGCCCCCGGTGTCCAG GGTAATAGGCCGCTTTCCTTCATAAAGCCCCCGGTGTCCAG < 41bp 0.861439051784046 0.587379311458836 0.37112752 0.11610243 prediction 0.548119480650419 Functional Loss - FCRLB ENSG00000162746 CDS Human protein_coding chr1:161697119 chr1:161697121 stopgain 0.971 5 23 hm5C_associated_SNPs_59068 0 0 0 0 1 FCRLB chr1:161697037 3'AG 161697037 Downstream 85bp
chr7 140374437 140374437 1 + G T UCEC 140374435 + 140374415 140374455 41 TGCACCCTGGCCTGCTCGCTCAGGTGCATATGGACCTGCTG TGCACCCTGGCCTGCTCGCTCATGTGCATATGGACCTGCTG < 41bp 0.774059357405765 0.419839302962686 0.92446446 0.42484558 prediction 0.54811871481153 Functional Loss - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140374435 chr7:140374437 nonsynonymous SNV 0.927 1 23 hm5C_associated_SNPs_59069 0 0 0 0 1 ADCK2 chr7:140374411 3'AG 140374411 Downstream 27bp
chr1 63991310 63991310 1 + C T UCEC 63991308 + 63991288 63991328 41 ATCAACACCTTCAGAGAGTCCTCGAACAAAGAAATTTCCAC ATCAACACCTTCAGAGAGTCCTTGAACAAAGAAATTTCCAC < 41bp 0.787543652471681 0.513485697146823 0.54710656 0.053153604 prediction 0.548115910649716 Functional Loss - EFCAB7 ENSG00000203965 CDS Human protein_coding chr1:63991308 chr1:63991310 stopgain 0.996 0 23 hm5C_associated_SNPs_59070 0 0 1 0 1 EFCAB7 chr1:63991243 3'AG 63991243 Downstream 68bp
chr6 126243897 126243897 1 + G C BRCA 126243896 + 126243876 126243916 41 GCCTATAGCACGTTAGAGCACGGGACCAGCTTAAAGACGCT GCCTATAGCACGTTAGAGCACCGGACCAGCTTAAAGACGCT < 41bp 0.774055052121199 0.481574596216431 0.67692655 0.21783528 prediction 0.548110104242397 Functional Loss - NCOA7 ENSG00000111912 CDS Human protein_coding chr6:126243896 chr6:126243897 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_59072 0 0 1 0 2 NCOA7 chr6:126243828 3'AG 126243828 Downstream 70bp
chr6 126243897 126243897 1 + G C BRCA 126243896 + 126243876 126243916 41 GCCTATAGCACGTTAGAGCACGGGACCAGCTTAAAGACGCT GCCTATAGCACGTTAGAGCACCGGACCAGCTTAAAGACGCT < 41bp 0.774055052121199 0.481574596216431 0.67692655 0.21783528 prediction 0.548110104242397 Functional Loss - NCOA7 ENSG00000111912 CDS Human protein_coding chr6:126243896 chr6:126243897 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_59072 0 0 1 0 2 NCOA7 chr6:126243980 5'GT 126243980 Upstream 84bp
chr3 101576282 101576282 1 + C T SKCM 101576280 + 101576260 101576300 41 AACAGCCAGTGCATTTGGTTCCCGATGGCCCTGTGGGAGAA AACAGCCAGTGCATTTGGTTCCTGATGGCCCTGTGGGAGAA < 41bp 0.790623068791338 0.516586828954128 0.24194449 0.23100242 prediction 0.548072479674419 Functional Loss - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101576280 chr3:101576282 synonymous SNV . 0 23 hm5C_associated_SNPs_59075 0 0 1 0 1 NFKBIZ chr3:101576303 5'GT 101576303 Upstream 22bp
chr4 100532356 100532356 1 + C T SKCM 100532354 + 100532334 100532374 41 GCTCACAATTATGACCGTTTCTCCAGGAGTGGATCTTCTTC GCTCACAATTATGACCGTTTCTTCAGGAGTGGATCTTCTTC < 41bp 0.812788971604264 0.53876820480673 0.9528699 0.09695926 prediction 0.548041533595068 Functional Loss - MTTP ENSG00000138823 CDS Human protein_coding chr4:100532354 chr4:100532356 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_59076 0 0 1 0 2 MTTP chr4:100532300 3'AG 100532300 Downstream 57bp
chr4 100532356 100532356 1 + C T SKCM 100532354 + 100532334 100532374 41 GCTCACAATTATGACCGTTTCTCCAGGAGTGGATCTTCTTC GCTCACAATTATGACCGTTTCTTCAGGAGTGGATCTTCTTC < 41bp 0.812788971604264 0.53876820480673 0.9528699 0.09695926 prediction 0.548041533595068 Functional Loss - MTTP ENSG00000138823 CDS Human protein_coding chr4:100532354 chr4:100532356 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_59076 0 0 1 0 2 MTTP chr4:100532397 5'GT 100532397 Upstream 42bp
chr16 72045969 72045969 1 + G C LUSC 72045965 + 72045945 72045985 41 GCAGAAGCGGGCCCAGGATGCTGTGATCATCCTGGGGGGAG GCAGAAGCGGGCCCAGGATGCTGTCATCATCCTGGGGGGAG < 41bp 0.77401590777849 0.489823292500182 0.23960611 0.1468823 prediction 0.548031815556981 Functional Loss - DHODH ENSG00000102967 CDS Human protein_coding chr16:72045965 chr16:72045969 synonymous SNV . 0 25 hm5C_associated_SNPs_59078 0 0 1 0 1 DHODH chr16:72045949 3'AG 72045949 Downstream 21bp
chr14 101198417 101198417 1 + A C rs6575799 101198413 + 101198393 101198433 41 TCCTCGGCCCCCTGTGCCAACAACAGGACCTGCGTGAGCCT TCCTCGGCCCCCTGTGCCAACAACCGGACCTGCGTGAGCCT < 41bp 0.774007304484162 0.360371183218193 0.34828138 0.20555335 prediction 0.548014608968325 Functional Loss - DLK1 ENSG00000185559 CDS Human protein_coding chr14:101198413 chr14:101198417 synonymous SNV . 0 25 hm5C_associated_SNPs_59080 0 0 1 0 1 DLK1 chr14:101198379 3'AG 101198379 Downstream 39bp
chr11 120322392 120322392 1 + G T UCEC 120322389 + 120322369 120322409 41 TTCCATGTCTTCTGTAGCTTCAGGGGCCTCTTTTTCCCAGG TTCCATGTCTTCTGTAGCTTCAGTGGCCTCTTTTTCCCAGG < 41bp 0.773992725522571 0.390737543354586 0.90924066 0.20697337 prediction 0.547985451045142 Functional Loss - ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120322389 chr11:120322392 nonsynonymous SNV 0.604 2 24 hm5C_associated_SNPs_59081 0 0 1 0 1 ARHGEF12 chr11:120322433 5'GT 120322433 Upstream 42bp
chr19 44564659 44564659 1 + G T LUAD 44564656 + 44564636 44564676 41 TGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCTTGCC TGGTCTTCACTGAGGAGGAGCTGTGGCTGCTGGACCTTGCC < 41bp 0.773983564244459 0.373150763583613 0.85780895 0.6411807 prediction 0.547967128488918 Functional Loss - ZNF223 ENSG00000178386;ENSG00000267022 CDS Human other chr19:44564656 chr19:44564659 nonsynonymous SNV 0.984 3 24 hm5C_associated_SNPs_59083 0 0 1 0 2 ZNF223 chr19:44564608 3'AG 44564608 Downstream 52bp
chr19 44564659 44564659 1 + G T LUAD 44564656 + 44564636 44564676 41 TGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCTTGCC TGGTCTTCACTGAGGAGGAGCTGTGGCTGCTGGACCTTGCC < 41bp 0.773983564244459 0.373150763583613 0.85780895 0.6411807 prediction 0.547967128488918 Functional Loss - ZNF223 ENSG00000178386;ENSG00000267022 CDS Human other chr19:44564656 chr19:44564659 nonsynonymous SNV 0.984 3 24 hm5C_associated_SNPs_59083 0 0 1 0 2 ZNF223 chr19:44564734 5'GT 44564734 Upstream 76bp
chr19 44564658 44564658 1 + G T SKCM 44564656 + 44564636 44564676 41 TGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCTTGCC TGGTCTTCACTGAGGAGGAGCTTGGGCTGCTGGACCTTGCC < 41bp 0.773983564244459 0.42933411373267 0.85780895 0.7746448 prediction 0.547967128488918 Functional Loss - ZNF223 ENSG00000178386;ENSG00000267022 CDS Human other chr19:44564656 chr19:44564658 synonymous SNV . 0 23 hm5C_associated_SNPs_59084 0 0 1 0 2 ZNF223 chr19:44564608 3'AG 44564608 Downstream 51bp
chr19 44564658 44564658 1 + G T SKCM 44564656 + 44564636 44564676 41 TGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCTTGCC TGGTCTTCACTGAGGAGGAGCTTGGGCTGCTGGACCTTGCC < 41bp 0.773983564244459 0.42933411373267 0.85780895 0.7746448 prediction 0.547967128488918 Functional Loss - ZNF223 ENSG00000178386;ENSG00000267022 CDS Human other chr19:44564656 chr19:44564658 synonymous SNV . 0 23 hm5C_associated_SNPs_59084 0 0 1 0 2 ZNF223 chr19:44564734 5'GT 44564734 Upstream 77bp
chr17 57682819 57682819 1 + G T SKCM 57682816 + 57682796 57682836 41 GTTTTGTATAGCTTCATGAACAGGAAACCAAACTTGAATGG GTTTTGTATAGCTTCATGAACAGTAAACCAAACTTGAATGG < 41bp 0.773980814980984 0.403141511512961 0.6125197 0.24736318 prediction 0.547961629961969 Functional Loss - DHX40 ENSG00000108406 CDS Human protein_coding chr17:57682816 chr17:57682819 stopgain 1.000 1 24 hm5C_associated_SNPs_59087 0 0 1 0 1 DHX40 chr17:57682807 3'AG 57682807 Downstream 13bp
chr7 63720670 63720670 1 + G T PAAD 63720668 + 63720648 63720688 41 GGCAATGCCTGGATCACGCTCAGCAGAATTTATATAGAGAT GGCAATGCCTGGATCACGCTCATCAGAATTTATATAGAGAT < 41bp 0.773969461941287 0.44962235736913 0.83136547 0.39751264 prediction 0.547938923882575 Functional Loss - ZNF679 ENSG00000197123 CDS Human protein_coding chr7:63720668 chr7:63720670 nonsynonymous SNV 0.095 3 23 hm5C_associated_SNPs_59091 0 0 0 0 2 ZNF679 chr7:63720599 3'AG 63720599 Downstream 72bp
chr7 63720670 63720670 1 + G T PAAD 63720668 + 63720648 63720688 41 GGCAATGCCTGGATCACGCTCAGCAGAATTTATATAGAGAT GGCAATGCCTGGATCACGCTCATCAGAATTTATATAGAGAT < 41bp 0.773969461941287 0.44962235736913 0.83136547 0.39751264 prediction 0.547938923882575 Functional Loss - ZNF679 ENSG00000197123 CDS Human protein_coding chr7:63720668 chr7:63720670 nonsynonymous SNV 0.095 3 23 hm5C_associated_SNPs_59091 0 0 0 0 2 ZNF679 chr7:63720725 5'GT 63720725 Upstream 56bp
chr19 51295594 51295594 1 + G T THYM 51295592 + 51295572 51295612 41 TTCTGGACACCCTCATGTGCCAGGTGAGCCCTGCCCCTTCC TTCTGGACACCCTCATGTGCCATGTGAGCCCTGCCCCTTCC < 41bp 0.773966208876355 0.430738027382725 0.74489486 0.1340133 prediction 0.54793241775271 Functional Loss - ACPT ENSG00000142513 CDS Human protein_coding chr19:51295592 chr19:51295594 nonsynonymous SNV 0.833 4 23 hm5C_associated_SNPs_59092 0 0 0 0 2 ACPT chr19:51295499 3'AG 51295499 Downstream 96bp
chr19 51295594 51295594 1 + G T THYM 51295592 + 51295572 51295612 41 TTCTGGACACCCTCATGTGCCAGGTGAGCCCTGCCCCTTCC TTCTGGACACCCTCATGTGCCATGTGAGCCCTGCCCCTTCC < 41bp 0.773966208876355 0.430738027382725 0.74489486 0.1340133 prediction 0.54793241775271 Functional Loss - ACPT ENSG00000142513 CDS Human protein_coding chr19:51295592 chr19:51295594 nonsynonymous SNV 0.833 4 23 hm5C_associated_SNPs_59092 0 0 0 0 2 ACPT chr19:51295594 5'GT 51295594 Upstream 1bp
chr5 230999 230999 1 + G T COAD 230997 + 230977 231017 41 TCTATTGTTTCCAGAGGCTACGGGCGCACCTACTTCAGCTG TCTATTGTTTCCAGAGGCTACGTGCGCACCTACTTCAGCTG < 41bp 0.773965044419052 0.423567633636576 0.846591 0.1061258 prediction 0.547930088838104 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:230997 chr5:230999 nonsynonymous SNV 0.968 3 23 hm5C_associated_SNPs_59093 0 0 1 0 1 SDHA chr5:230991 3'AG 230991 Downstream 9bp
chr9 123921207 123921207 1 + C T SKCM 123921205 + 123921185 123921225 41 AAAAGGAGGAGCTGCATCTACTCCAAGGAAGCATGGTCCAG AAAAGGAGGAGCTGCATCTACTTCAAGGAAGCATGGTCCAG < 41bp 0.773958051375837 0.491280948387574 0.9565666 0.20510116 prediction 0.547916102751673 Functional Loss - CNTRL ENSG00000119397 CDS Human protein_coding chr9:123921205 chr9:123921207 synonymous SNV . 0 23 hm5C_associated_SNPs_59094 0 0 1 0 2 CNTRL chr9:123921133 3'AG 123921133 Downstream 75bp
chr9 123921207 123921207 1 + C T SKCM 123921205 + 123921185 123921225 41 AAAAGGAGGAGCTGCATCTACTCCAAGGAAGCATGGTCCAG AAAAGGAGGAGCTGCATCTACTTCAAGGAAGCATGGTCCAG < 41bp 0.773958051375837 0.491280948387574 0.9565666 0.20510116 prediction 0.547916102751673 Functional Loss - CNTRL ENSG00000119397 CDS Human protein_coding chr9:123921205 chr9:123921207 synonymous SNV . 0 23 hm5C_associated_SNPs_59094 0 0 1 0 2 CNTRL chr9:123921171 3'AG 123921171 Downstream 37bp
chr4 15707200 15707200 1 + C T ESCA 15707198 + 15707178 15707218 41 GCGCTGGACAAGGATCCCTGCTCCGTGCTGCCCTCAGACTA GCGCTGGACAAGGATCCCTGCTTCGTGCTGCCCTCAGACTA < 41bp 0.773950451618617 0.499287397773942 0.072341114 0.066505104 prediction 0.547900903237234 Functional Loss - BST1 ENSG00000109743 CDS Human protein_coding chr4:15707198 chr4:15707200 nonsynonymous SNV 0.007 2 23 hm5C_associated_SNPs_59097 0 0 0 0 2 BST1 chr4:15707138 3'AG 15707138 Downstream 63bp
chr4 15707200 15707200 1 + C T ESCA 15707198 + 15707178 15707218 41 GCGCTGGACAAGGATCCCTGCTCCGTGCTGCCCTCAGACTA GCGCTGGACAAGGATCCCTGCTTCGTGCTGCCCTCAGACTA < 41bp 0.773950451618617 0.499287397773942 0.072341114 0.066505104 prediction 0.547900903237234 Functional Loss - BST1 ENSG00000109743 CDS Human protein_coding chr4:15707198 chr4:15707200 nonsynonymous SNV 0.007 2 23 hm5C_associated_SNPs_59097 0 0 0 0 2 BST1 chr4:15707264 5'GT 15707264 Upstream 65bp
chr21 43838718 43838718 1 + G T THCA 43838716 + 43838696 43838736 41 TCTGACACGTGGGTGAAGCACAGGTGAGTGCTGCCTCTGGC TCTGACACGTGGGTGAAGCACATGTGAGTGCTGCCTCTGGC < 41bp 0.872700849172977 0.598760550383545 0.7574935 0.3638195 prediction 0.547880597578864 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43838716 chr21:43838718 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_59099 0 0 0 1 1 UBASH3A chr21:43838718 5'GT 43838718 Upstream 1bp
chr17 79009096 79009096 1 + A C UCEC 79009092 + 79009072 79009112 41 AGAGGAGATGCACCGGCTCACGGAAAATGTCTATAAGGTGA AGAGGAGATGCACCGGCTCACGGACAATGTCTATAAGGTGA < 41bp 0.773928843390548 0.414496450439202 0.8126714 0.3013336 prediction 0.547857686781096 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79009092 chr17:79009096 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_59102 0 0 1 0 1 BAIAP2 chr17:79009108 5'GT 79009108 Upstream 13bp
chr2 231248247 231248247 1 + G T HNSC 231248244 + 231248224 231248264 41 GGAAAAAAGAAGGGGCATGGCTGGAGCAGAATGGGAACGAG GGAAAAAAGAAGGGGCATGGCTGTAGCAGAATGGGAACGAG < 41bp 0.898329783019353 0.624422771967245 0.28124106 0.1131151 prediction 0.547814022104215 Functional Loss - SP140L ENSG00000185404 CDS Human protein_coding chr2:231248244 chr2:231248247 nonsynonymous SNV 0.008 2 24 hm5C_associated_SNPs_59104 0 0 1 0 2 SP140L chr2:231248225 3'AG 231248225 Downstream 23bp
chr2 231248247 231248247 1 + G T HNSC 231248244 + 231248224 231248264 41 GGAAAAAAGAAGGGGCATGGCTGGAGCAGAATGGGAACGAG GGAAAAAAGAAGGGGCATGGCTGTAGCAGAATGGGAACGAG < 41bp 0.898329783019353 0.624422771967245 0.28124106 0.1131151 prediction 0.547814022104215 Functional Loss - SP140L ENSG00000185404 CDS Human protein_coding chr2:231248244 chr2:231248247 nonsynonymous SNV 0.008 2 24 hm5C_associated_SNPs_59104 0 0 1 0 2 SP140L chr2:231248290 5'GT 231248290 Upstream 44bp
chr17 2224706 2224706 1 + A C UCEC 2224702 + 2224682 2224722 41 CTGGACAAGGGACAATTGCCCTGGAAGTGCTGAACCAGGTA CTGGACAAGGGACAATTGCCCTGGCAGTGCTGAACCAGGTA < 41bp 0.914637149863257 0.64073074399042 0.22229093 0.34339035 prediction 0.547812811745674 Functional Loss - SRR ENSG00000167720 CDS Human protein_coding chr17:2224702 chr17:2224706 nonsynonymous SNV 0.992 5 25 hm5C_associated_SNPs_59105 0 0 0 0 1 SRR chr17:2224719 5'GT 2224719 Upstream 14bp
chr17 41338374 41338374 1 + G T COAD 41338371 + 41338351 41338391 41 GGAGCAAAACGACTAGCTGCCAGGGCAGGGAAGAAGCCACT GGAGCAAAACGACTAGCTGCCAGTGCAGGGAAGAAGCCACT < 41bp 0.773902569682947 0.381873893458317 0.7948062 0.069105595 prediction 0.547805139365894 Functional Loss - NBR1 ENSG00000188554 CDS Human protein_coding chr17:41338371 chr17:41338374 nonsynonymous SNV 0.895 1 24 hm5C_associated_SNPs_59106 0 0 1 0 1 NBR1 chr17:41338461 5'GT 41338461 Upstream 88bp
chr20 25259060 25259060 1 + G T BLCA 25259057 + 25259037 25259077 41 AGTCGTCCAAGTTCGGCTGCCGGGACCCTGTGAGAACCTGT AGTCGTCCAAGTTCGGCTGCCGGTACCCTGTGAGAACCTGT < 41bp 0.773898517592834 0.380840740009787 0.55470496 0.13067415 prediction 0.547797035185669 Functional Loss - PYGB ENSG00000100994 CDS Human protein_coding chr20:25259057 chr20:25259060 nonsynonymous SNV 0.957 3 24 hm5C_associated_SNPs_59107 0 0 1 0 1 PYGB chr20:25259098 5'GT 25259098 Upstream 39bp
chr8 99162816 99162816 1 + G T GBM 99162814 + 99162794 99162834 41 GATTTTCCAGACTGCCCTGCCGGGATGCTGTTTGCGGAAGA GATTTTCCAGACTGCCCTGCCGTGATGCTGTTTGCGGAAGA < 41bp 0.860328883775915 0.586434885464412 0.8649756 0.18782705 prediction 0.547787996623007 Functional Loss - POP1 ENSG00000104356 CDS Human protein_coding chr8:99162814 chr8:99162816 nonsynonymous SNV 0.931 3 23 hm5C_associated_SNPs_59108 0 0 0 0 1 POP1 chr8:99162867 5'GT 99162867 Upstream 52bp
chr17 29281564 29281564 1 + G T UCEC 29281561 + 29281541 29281581 41 GAGCGGAGGCTGCTCTATTACAAGAACCCACTGGTAAGAGC GAGCGGAGGCTGCTCTATTACAATAACCCACTGGTAAGAGC < 41bp 0.900034219895904 0.626144652399216 0.69384277 0.22674781 prediction 0.547779134993376 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29281561 chr17:29281564 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_59111 0 0 1 0 3 ADAP2 chr17:29281496 3'AG 29281496 Downstream 69bp
chr17 29281564 29281564 1 + G T UCEC 29281561 + 29281541 29281581 41 GAGCGGAGGCTGCTCTATTACAAGAACCCACTGGTAAGAGC GAGCGGAGGCTGCTCTATTACAATAACCCACTGGTAAGAGC < 41bp 0.900034219895904 0.626144652399216 0.69384277 0.22674781 prediction 0.547779134993376 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29281561 chr17:29281564 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_59111 0 0 1 0 3 ADAP2 chr17:29281499 3'AG 29281499 Downstream 66bp
chr17 29281564 29281564 1 + G T UCEC 29281561 + 29281541 29281581 41 GAGCGGAGGCTGCTCTATTACAAGAACCCACTGGTAAGAGC GAGCGGAGGCTGCTCTATTACAATAACCCACTGGTAAGAGC < 41bp 0.900034219895904 0.626144652399216 0.69384277 0.22674781 prediction 0.547779134993376 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29281561 chr17:29281564 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_59111 0 0 1 0 3 ADAP2 chr17:29281573 5'GT 29281573 Upstream 10bp
chr20 61944526 61944526 1 + G T UCEC 61944524 + 61944504 61944544 41 GCCTGGCCTAGGGAGGCACACAGAGTACGACGTCACCATCT GCCTGGCCTAGGGAGGCACACATAGTACGACGTCACCATCT < 41bp 0.773887113836876 0.425952479131277 0.87976635 0.063912004 prediction 0.547774227673753 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61944524 chr20:61944526 stopgain 0.014 0 23 hm5C_associated_SNPs_59112 0 0 0 0 2 COL20A1 chr20:61944469 3'AG 61944469 Downstream 58bp
chr20 61944526 61944526 1 + G T UCEC 61944524 + 61944504 61944544 41 GCCTGGCCTAGGGAGGCACACAGAGTACGACGTCACCATCT GCCTGGCCTAGGGAGGCACACATAGTACGACGTCACCATCT < 41bp 0.773887113836876 0.425952479131277 0.87976635 0.063912004 prediction 0.547774227673753 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61944524 chr20:61944526 stopgain 0.014 0 23 hm5C_associated_SNPs_59112 0 0 0 0 2 COL20A1 chr20:61944601 5'GT 61944601 Upstream 76bp
chr3 52525405 52525405 1 + G T LGG 52525403 + 52525383 52525423 41 AGGTGGTCACGTGCTTGACGCGGGACAGCTACCTGACGCAC AGGTGGTCACGTGCTTGACGCGTGACAGCTACCTGACGCAC < 41bp 0.865937610541186 0.592067782489716 0.9017761 0.34729826 prediction 0.54773965610294 Functional Loss - NISCH ENSG00000010322 CDS Human protein_coding chr3:52525403 chr3:52525405 synonymous SNV . 0 23 hm5C_associated_SNPs_59115 0 0 1 0 1 NISCH chr3:52525368 3'AG 52525368 Downstream 38bp
chr16 19083370 19083370 1 + G T LUAD 19083368 + 19083348 19083388 41 GCAGGCGAATATGGAGCAAACCGCATCTATGCCGGGCAGAT GCAGGCGAATATGGAGCAAACCTCATCTATGCCGGGCAGAT < 41bp 0.77385953485414 0.4387146889169 0.24879685 0.1758509 prediction 0.547719069708279 Functional Loss - COQ7 ENSG00000167186 CDS Human protein_coding chr16:19083368 chr16:19083370 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_59117 0 0 1 0 1 COQ7 chr16:19083428 5'GT 19083428 Upstream 59bp
chr10 60996319 60996319 1 + G T UCEC 60996316 + 60996296 60996336 41 TGGACACTGGTTTTTAAGCCCAAGAACTGAATATACAGTAG TGGACACTGGTTTTTAAGCCCAATAACTGAATATACAGTAG < 41bp 0.773853803685341 0.400115643140193 0.18907595 0.21649298 prediction 0.547707607370682 Functional Loss - PHYHIPL ENSG00000165443 CDS Human protein_coding chr10:60996316 chr10:60996319 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_59119 0 0 0 0 2 PHYHIPL chr10:60996243 3'AG 60996243 Downstream 77bp
chr10 60996319 60996319 1 + G T UCEC 60996316 + 60996296 60996336 41 TGGACACTGGTTTTTAAGCCCAAGAACTGAATATACAGTAG TGGACACTGGTTTTTAAGCCCAATAACTGAATATACAGTAG < 41bp 0.773853803685341 0.400115643140193 0.18907595 0.21649298 prediction 0.547707607370682 Functional Loss - PHYHIPL ENSG00000165443 CDS Human protein_coding chr10:60996316 chr10:60996319 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_59119 0 0 0 0 2 PHYHIPL chr10:60996417 5'GT 60996417 Upstream 99bp
chr12 122690928 122690928 1 + G T UCEC 122690925 + 122690905 122690945 41 ACAGCTTGGCTGTGCTGTTGCTCGGCTGCCTGCTCTTCCTG ACAGCTTGGCTGTGCTGTTGCTCTGCTGCCTGCTCTTCCTG < 41bp 0.907851308656096 0.634006806647958 0.2458699 0.13500708 prediction 0.547689004016276 Functional Loss - B3GNT4 ENSG00000176383 CDS Human protein_coding chr12:122690925 chr12:122690928 nonsynonymous SNV 0.346 2 24 hm5C_associated_SNPs_59122 0 0 0 0 1 B3GNT4 chr12:122690865 3'AG 122690865 Downstream 64bp
chr16 84940208 84940208 1 + G T LUSC 84940205 + 84940185 84940225 41 TTTTTTCAGCCTGGGGACTCCTCGGGATGGAAAGGCCTTCC TTTTTTCAGCCTGGGGACTCCTCTGGATGGAAAGGCCTTCC < 41bp 0.773820649714513 0.400580932533179 0.17480257 0.12518701 prediction 0.547641299429026 Functional Loss - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84940205 chr16:84940208 nonsynonymous SNV 0.015 1 24 hm5C_associated_SNPs_59123 0 0 0 0 1 CRISPLD2 chr16:84940194 3'AG 84940194 Downstream 15bp
chr6 43144302 43144302 1 + G T OV 43144300 + 43144280 43144320 41 TTGCAGGTGGGGCAGTGGCCCAGCAGGTCCCAGTGCAGGCC TTGCAGGTGGGGCAGTGGCCCATCAGGTCCCAGTGCAGGCC < 41bp 0.858689480237006 0.584884108450456 0.14041072 0.04840699 prediction 0.5476107435731 Functional Loss - SRF ENSG00000112658 CDS Human protein_coding chr6:43144300 chr6:43144302 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_59128 0 0 1 0 1 SRF chr6:43144286 3'AG 43144286 Downstream 17bp
chr16 1544301 1544301 1 + G C rs2667660 1544297 + 1544277 1544317 41 TGCAGGATGGAGCCAGCACCCTCAGAGGTTCGACTCGCCGT TGCAGGATGGAGCCAGCACCCTCACAGGTTCGACTCGCCGT < 41bp 0.784532754707568 0.510738359040618 0.050945163 0.05950862 prediction 0.5475887913339 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1544297 chr16:1544301 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_59130 0 0 1 0 2 TELO2 chr16:1544247 3'AG 1544247 Downstream 55bp
chr16 1544301 1544301 1 + G C rs2667660 1544297 + 1544277 1544317 41 TGCAGGATGGAGCCAGCACCCTCAGAGGTTCGACTCGCCGT TGCAGGATGGAGCCAGCACCCTCACAGGTTCGACTCGCCGT < 41bp 0.784532754707568 0.510738359040618 0.050945163 0.05950862 prediction 0.5475887913339 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1544297 chr16:1544301 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_59130 0 0 1 0 2 TELO2 chr16:1544282 3'AG 1544282 Downstream 20bp
chr6 44376337 44376337 1 + C T STAD 44376335 + 44376315 44376355 41 CAGCGTTGCTCTTAGAACACCACGAACACCAGCTTCCCAGG CAGCGTTGCTCTTAGAACACCATGAACACCAGCTTCCCAGG < 41bp 0.788342350409641 0.514554501508928 0.11997229 0.044275254 prediction 0.547575697801426 Functional Loss - CDC5L ENSG00000096401 CDS Human protein_coding chr6:44376335 chr6:44376337 stopgain 0.957 1 23 hm5C_associated_SNPs_59131 0 0 1 0 1 CDC5L chr6:44376369 5'GT 44376369 Upstream 33bp
chr17 7158024 7158024 1 + C T COAD 7158022 + 7158002 7158042 41 AGGACAGATCCTGTTCCTGTCACCATTGCTCTCGATTCACT AGGACAGATCCTGTTCCTGTCATCATTGCTCTCGATTCACT < 41bp 0.781519502190619 0.507743137686115 0.2930243 0.39281422 prediction 0.547552729009008 Functional Loss - ELP5 ENSG00000170291 CDS Human protein_coding chr17:7158022 chr17:7158024 nonsynonymous SNV 0.987 3 23 hm5C_associated_SNPs_59132 0 0 1 0 1 ELP5 chr17:7158122 5'GT 7158122 Upstream 99bp
chr1 110020593 110020593 1 + G C KIRC 110020592 + 110020572 110020612 41 GAGGAAGCAGTGTGCAGTGCCGGGGCCACGCCCTCTATGGG GAGGAAGCAGTGTGCAGTGCCCGGGCCACGCCCTCTATGGG < 41bp 0.830575789531022 0.556805718174717 0.9061826 0.8669771 prediction 0.547540142712609 Functional Loss - SYPL2 ENSG00000143028 CDS Human protein_coding chr1:110020592 chr1:110020593 nonsynonymous SNV 0.969 3 22 hm5C_associated_SNPs_59133 0 0 0 0 1 SYPL2 chr1:110020631 5'GT 110020631 Upstream 39bp
chr19 11018765 11018765 1 + G T BLCA 11018762 + 11018742 11018782 41 AAACCTGCCGGGGCCACACCCTGGAGCGGTCTGTGTTCAGC AAACCTGCCGGGGCCACACCCTGTAGCGGTCTGTGTTCAGC < 41bp 0.902341303606469 0.628584753441197 0.87249374 0.2505848 prediction 0.547513100330543 Functional Loss - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11018762 chr19:11018765 stopgain 0.981 1 24 hm5C_associated_SNPs_59138 0 0 1 0 2 CARM1 chr19:11018715 3'AG 11018715 Downstream 51bp
chr19 11018765 11018765 1 + G T BLCA 11018762 + 11018742 11018782 41 AAACCTGCCGGGGCCACACCCTGGAGCGGTCTGTGTTCAGC AAACCTGCCGGGGCCACACCCTGTAGCGGTCTGTGTTCAGC < 41bp 0.902341303606469 0.628584753441197 0.87249374 0.2505848 prediction 0.547513100330543 Functional Loss - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11018762 chr19:11018765 stopgain 0.981 1 24 hm5C_associated_SNPs_59138 0 0 1 0 2 CARM1 chr19:11018821 5'GT 11018821 Upstream 57bp
chr2 85818961 85818961 1 + G T SARC 85818959 + 85818939 85818979 41 TGAAGCTGGCCGAACTGCAGCAGCGTTCAGACCAACTCCTG TGAAGCTGGCCGAACTGCAGCATCGTTCAGACCAACTCCTG < 41bp 0.773749558122831 0.442164761291131 0.50082815 0.07527149 prediction 0.547499116245662 Functional Loss - VAMP5 ENSG00000168899 CDS Human protein_coding chr2:85818959 chr2:85818961 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_59139 0 0 0 0 1 VAMP5 chr2:85818985 5'GT 85818985 Upstream 25bp
chr5 6583739 6583739 1 + G C rs114498008 6583738 + 6583718 6583758 41 GGCAGAGGAGAGGGAAGGGTCGCGCCTGGTGGGGGCCTGAG GGCAGAGGAGAGGGAAGGGTCCCGCCTGGTGGGGGCCTGAG < 41bp 0.773741210439338 0.48791884698081 0.6243395 0.565089 prediction 0.547482420878676 Functional Loss - LINC01018 ENSG00000250056 ncRNA_exonic Human lincRNA chr5:6583738 chr5:6583739 . . 0 22 hm5C_associated_SNPs_59142 0 0 0 0 1 LINC01018 chr5:6583716 3'AG 6583716 Downstream 24bp
chr9 131468080 131468080 1 + G T COAD 131468077 + 131468057 131468097 41 GCTCGGCACCTAGAGGCTCTCCGGAGGCAGCTGCATGTGGA GCTCGGCACCTAGAGGCTCTCCGTAGGCAGCTGCATGTGGA < 41bp 0.900131366412661 0.626406960866741 0.91614854 0.7621147 prediction 0.547448811091841 Functional Loss - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131468077 chr9:131468080 synonymous SNV . 0 24 hm5C_associated_SNPs_59146 0 0 1 0 2 PKN3 chr9:131468013 3'AG 131468013 Downstream 68bp
chr9 131468080 131468080 1 + G T COAD 131468077 + 131468057 131468097 41 GCTCGGCACCTAGAGGCTCTCCGGAGGCAGCTGCATGTGGA GCTCGGCACCTAGAGGCTCTCCGTAGGCAGCTGCATGTGGA < 41bp 0.900131366412661 0.626406960866741 0.91614854 0.7621147 prediction 0.547448811091841 Functional Loss - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131468077 chr9:131468080 synonymous SNV . 0 24 hm5C_associated_SNPs_59146 0 0 1 0 2 PKN3 chr9:131468158 5'GT 131468158 Upstream 79bp
chr7 36445887 36445887 1 + A T LUAD 36445883 + 36445863 36445903 41 GCTTTCAAATGCCTCGGCAACTCCAGTTGGCAGAAGGGGCC GCTTTCAAATGCCTCGGCAACTCCTGTTGGCAGAAGGGGCC < 41bp 0.8790224351568 0.60531061203836 0.9130757 0.24566182 prediction 0.547423646236879 Functional Loss - ANLN ENSG00000011426 CDS Human protein_coding chr7:36445883 chr7:36445887 synonymous SNV . 0 25 hm5C_associated_SNPs_59149 0 0 1 0 1 ANLN chr7:36445790 3'AG 36445790 Downstream 98bp
chr17 78166396 78166396 1 + G T SARC 78166394 + 78166374 78166414 41 TGCCCCAGAGACGACAGCGACTGCAGCCTCGTCAGCTCCAC TGCCCCAGAGACGACAGCGACTTCAGCCTCGTCAGCTCCAC < 41bp 0.773710609793413 0.43545741922448 0.55608 0.21364313 prediction 0.547421219586825 Functional Loss - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78166394 chr17:78166396 nonsynonymous SNV 0.013 0 23 hm5C_associated_SNPs_59150 0 0 0 0 2 CARD14 chr17:78166302 3'AG 78166302 Downstream 95bp
chr17 78166396 78166396 1 + G T SARC 78166394 + 78166374 78166414 41 TGCCCCAGAGACGACAGCGACTGCAGCCTCGTCAGCTCCAC TGCCCCAGAGACGACAGCGACTTCAGCCTCGTCAGCTCCAC < 41bp 0.773710609793413 0.43545741922448 0.55608 0.21364313 prediction 0.547421219586825 Functional Loss - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78166394 chr17:78166396 nonsynonymous SNV 0.013 0 23 hm5C_associated_SNPs_59150 0 0 0 0 2 CARD14 chr17:78166418 5'GT 78166418 Upstream 23bp
chrX 134993755 134993755 1 + G T LUSC 134993752 + 134993732 134993772 41 TTCCAGATGCTACTGTCATTCACGATATCCAGGAGGAGGAG TTCCAGATGCTACTGTCATTCACTATATCCAGGAGGAGGAG < 41bp 0.890409573850837 0.616707338798323 0.17514795 0.14784274 prediction 0.547404470105028 Functional Loss - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134993752 chrX:134993755 nonsynonymous SNV 0.000 3 24 hm5C_associated_SNPs_59151 0 0 0 0 1 SAGE1 chrX:134993738 3'AG 134993738 Downstream 18bp
chr1 36772024 36772024 1 + G T LIHC 36772021 + 36772001 36772041 41 CTGGAGGGCGCCCCGGAAACCATGGGTAAGTGCGGAGGCTT CTGGAGGGCGCCCCGGAAACCATTGGTAAGTGCGGAGGCTT < 41bp 0.773696169329402 0.39422608673057 0.8339902 0.23330727 prediction 0.547392338658804 Functional Loss - SH3D21 ENSG00000214193 CDS Human protein_coding chr1:36772021 chr1:36772024 nonsynonymous SNV 0.944 0 24 hm5C_associated_SNPs_59152 0 0 0 0 1 SH3D21 chr1:36772025 5'GT 36772025 Upstream 2bp
chr4 106861718 106861718 1 + C T COAD 106861716 + 106861696 106861736 41 GTATCAGTGCAGCAGCTTTGCTCGATGTTATAACATACGTG GTATCAGTGCAGCAGCTTTGCTTGATGTTATAACATACGTG < 41bp 0.797714437481882 0.524024515739333 0.27010715 0.11585727 prediction 0.547379843485098 Functional Loss - NPNT ENSG00000168743 CDS Human protein_coding chr4:106861716 chr4:106861718 stopgain 0.980 0 23 hm5C_associated_SNPs_59154 0 0 0 0 2 NPNT chr4:106861671 3'AG 106861671 Downstream 48bp
chr4 106861718 106861718 1 + C T COAD 106861716 + 106861696 106861736 41 GTATCAGTGCAGCAGCTTTGCTCGATGTTATAACATACGTG GTATCAGTGCAGCAGCTTTGCTTGATGTTATAACATACGTG < 41bp 0.797714437481882 0.524024515739333 0.27010715 0.11585727 prediction 0.547379843485098 Functional Loss - NPNT ENSG00000168743 CDS Human protein_coding chr4:106861716 chr4:106861718 stopgain 0.980 0 23 hm5C_associated_SNPs_59154 0 0 0 0 2 NPNT chr4:106861793 5'GT 106861793 Upstream 76bp
chr15 64717779 64717779 1 + G T LUAD 64717777 + 64717757 64717797 41 ACTATCCGTCAGGTTGTCTTCTGGGCTGTGTGGACCTAATT ACTATCCGTCAGGTTGTCTTCTTGGCTGTGTGGACCTAATT < 41bp 0.773689837121849 0.445324206540195 0.6606574 0.09894958 prediction 0.547379674243699 Functional Loss - TRIP4 ENSG00000103671 CDS Human protein_coding chr15:64717777 chr15:64717779 synonymous SNV . 0 23 hm5C_associated_SNPs_59155 0 0 1 0 2 TRIP4 chr15:64717739 3'AG 64717739 Downstream 41bp
chr15 64717779 64717779 1 + G T LUAD 64717777 + 64717757 64717797 41 ACTATCCGTCAGGTTGTCTTCTGGGCTGTGTGGACCTAATT ACTATCCGTCAGGTTGTCTTCTTGGCTGTGTGGACCTAATT < 41bp 0.773689837121849 0.445324206540195 0.6606574 0.09894958 prediction 0.547379674243699 Functional Loss - TRIP4 ENSG00000103671 CDS Human protein_coding chr15:64717777 chr15:64717779 synonymous SNV . 0 23 hm5C_associated_SNPs_59155 0 0 1 0 2 TRIP4 chr15:64717830 5'GT 64717830 Upstream 52bp
chr13 31540478 31540478 1 + G T COAD 31540475 + 31540455 31540495 41 CAGCTAAAATTCCTGAGCTTCAAGATTTCAGTTTCAAATAT CAGCTAAAATTCCTGAGCTTCAATATTTCAGTTTCAAATAT < 41bp 0.773670677897329 0.407312289679191 0.13704139 0.06045276 prediction 0.547341355794658 Functional Loss - TEX26 ENSG00000175664 CDS Human protein_coding chr13:31540475 chr13:31540478 nonsynonymous SNV 0.931 3 24 hm5C_associated_SNPs_59159 0 0 0 0 1 TEX26 chr13:31540535 5'GT 31540535 Upstream 58bp
chr1 45101302 45101302 1 + G T UCEC 45101300 + 45101280 45101320 41 GCCCCCTGGCAGGATCGGAGCAGGAGATGAGTAGGCATGTG GCCCCCTGGCAGGATCGGAGCATGAGATGAGTAGGCATGTG < 41bp 0.860830070183327 0.587166574569491 0.8960843 0.49042526 prediction 0.547326991227672 Functional Loss - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45101300 chr1:45101302 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_59162 0 0 1 0 2 RNF220 chr1:45101217 3'AG 45101217 Downstream 86bp
chr1 45101302 45101302 1 + G T UCEC 45101300 + 45101280 45101320 41 GCCCCCTGGCAGGATCGGAGCAGGAGATGAGTAGGCATGTG GCCCCCTGGCAGGATCGGAGCATGAGATGAGTAGGCATGTG < 41bp 0.860830070183327 0.587166574569491 0.8960843 0.49042526 prediction 0.547326991227672 Functional Loss - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45101300 chr1:45101302 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_59162 0 0 1 0 2 RNF220 chr1:45101338 5'GT 45101338 Upstream 37bp
chr18 9533742 9533742 1 + C T SKCM 9533740 + 9533720 9533760 41 AGTGAGACTGAGGAGTACTCCTCCGAGAGCGAGAGCGAGAG AGTGAGACTGAGGAGTACTCCTTCGAGAGCGAGAGCGAGAG < 41bp 0.793088719323056 0.519427785158507 0.33477718 0.1783688 prediction 0.547321868329098 Functional Loss - RALBP1 ENSG00000017797 CDS Human protein_coding chr18:9533740 chr18:9533742 nonsynonymous SNV 0.413 4 23 hm5C_associated_SNPs_59163 0 0 1 0 2 RALBP1 chr18:9533701 3'AG 9533701 Downstream 42bp
chr18 9533742 9533742 1 + C T SKCM 9533740 + 9533720 9533760 41 AGTGAGACTGAGGAGTACTCCTCCGAGAGCGAGAGCGAGAG AGTGAGACTGAGGAGTACTCCTTCGAGAGCGAGAGCGAGAG < 41bp 0.793088719323056 0.519427785158507 0.33477718 0.1783688 prediction 0.547321868329098 Functional Loss - RALBP1 ENSG00000017797 CDS Human protein_coding chr18:9533740 chr18:9533742 nonsynonymous SNV 0.413 4 23 hm5C_associated_SNPs_59163 0 0 1 0 2 RALBP1 chr18:9533824 5'GT 9533824 Upstream 83bp
chr2 241500794 241500794 1 + G T HNSC 241500791 + 241500771 241500811 41 GCAGAACCGAACCCGGGCTTCTGGTCTCAGCTCCAGAAGTA GCAGAACCGAACCCGGGCTTCTGTTCTCAGCTCCAGAAGTA < 41bp 0.773656453368637 0.389192357177485 0.27044427 0.26085454 prediction 0.547312906737275 Functional Loss - DUSP28 ENSG00000188542 CDS Human protein_coding chr2:241500791 chr2:241500794 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_59164 0 0 1 0 1 DUSP28 chr2:241500747 3'AG 241500747 Downstream 48bp
chr22 24034361 24034361 1 + G T KIRC 24034359 + 24034339 24034379 41 GTACAGCCCTGCTGTATGGCCAGGTCTGCCCCTTCCAGGAC GTACAGCCCTGCTGTATGGCCATGTCTGCCCCTTCCAGGAC < 41bp 0.773620987643499 0.42952485985386 0.87196493 0.32789516 prediction 0.547241975286999 Functional Loss - RGL4 ENSG00000159496 CDS Human protein_coding chr22:24034359 chr22:24034361 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_59167 0 0 0 0 1 RGL4 chr22:24034396 5'GT 24034396 Upstream 36bp
chr3 188933139 188933139 1 + G T LUSC 188933136 + 188933116 188933156 41 AGGTCACGTAGCTGAGACTTCTGGAGAGACCATTCAAGGCT AGGTCACGTAGCTGAGACTTCTGTAGAGACCATTCAAGGCT < 41bp 0.885388827998061 0.611771376622273 0.37978315 0.19749084 prediction 0.547234902751577 Functional Loss - TPRG1 ENSG00000188001 CDS Human protein_coding chr3:188933136 chr3:188933139 nonsynonymous SNV 0.992 2 24 hm5C_associated_SNPs_59168 0 0 0 0 2 TPRG1 chr3:188933081 3'AG 188933081 Downstream 59bp
chr3 188933139 188933139 1 + G T LUSC 188933136 + 188933116 188933156 41 AGGTCACGTAGCTGAGACTTCTGGAGAGACCATTCAAGGCT AGGTCACGTAGCTGAGACTTCTGTAGAGACCATTCAAGGCT < 41bp 0.885388827998061 0.611771376622273 0.37978315 0.19749084 prediction 0.547234902751577 Functional Loss - TPRG1 ENSG00000188001 CDS Human protein_coding chr3:188933136 chr3:188933139 nonsynonymous SNV 0.992 2 24 hm5C_associated_SNPs_59168 0 0 0 0 2 TPRG1 chr3:188933172 5'GT 188933172 Upstream 34bp
chr19 2813150 2813150 1 + G T LUAD 2813148 + 2813128 2813168 41 AGAAGCTGCATCCTGAGACCCGGCGGTTCCGAGGATGCCAG AGAAGCTGCATCCTGAGACCCGTCGGTTCCGAGGATGCCAG < 41bp 0.860604729142623 0.587000544568353 0.8513961 0.19938019 prediction 0.547208369148539 Functional Loss - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2813148 chr19:2813150 nonsynonymous SNV 0.626 4 23 hm5C_associated_SNPs_59170 0 0 1 0 1 THOP1 chr19:2813113 3'AG 2813113 Downstream 38bp
chr20 19870273 19870273 1 + G T OV 19870270 + 19870250 19870290 41 CAGCTTGGACCATGGGCGCCCGCGGTCTGGACAAGCGAGGA CAGCTTGGACCATGGGCGCCCGCTGTCTGGACAAGCGAGGA < 41bp 0.773602368987937 0.38331578869688 0.18469322 0.068861455 prediction 0.547204737975874 Functional Loss - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19870270 chr20:19870273 nonsynonymous SNV 0.982 0 24 hm5C_associated_SNPs_59171 0 0 1 0 1 RIN2 chr20:19870302 5'GT 19870302 Upstream 30bp
chr10 90429698 90429698 1 + C T UCEC 90429696 + 90429676 90429716 41 GTTGGCCATTCCCAGGGCACCACCATTGGTAAGTAATGGCA GTTGGCCATTCCCAGGGCACCATCATTGGTAAGTAATGGCA < 41bp 0.779770970520429 0.506173076819648 0.26007676 0.13763958 prediction 0.547195787401562 Functional Loss - LIPF ENSG00000182333 CDS Human protein_coding chr10:90429696 chr10:90429698 nonsynonymous SNV 0.930 4 23 hm5C_associated_SNPs_59172 0 0 0 0 1 LIPF chr10:90429703 5'GT 90429703 Upstream 6bp
chr9 82334988 82334988 1 + A T OV 82334984 + 82334964 82335004 41 AGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGG AGGGATAACTACATCCGTTCCTGCTGATTGCTCCCTGATGG < 41bp 0.773583829204175 0.441034813791212 0.42355484 0.24805033 prediction 0.547167658408349 Functional Loss - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82334984 chr9:82334988 stopgain 1.000 1 25 hm5C_associated_SNPs_59176 0 0 1 0 1 TLE4 chr9:82334961 3'AG 82334961 Downstream 28bp
chr1 22903298 22903298 1 + G C CESC 22903294 + 22903274 22903314 41 ACACCCAAGATGTACTGCAGCGCGGAGGGCGAGTGGCTCGT ACACCCAAGATGTACTGCAGCGCGCAGGGCGAGTGGCTCGT < 41bp 0.773579489132939 0.499215034156093 0.2651288 0.17019653 prediction 0.547158978265877 Functional Loss - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22903294 chr1:22903298 nonsynonymous SNV 0.990 4 25 hm5C_associated_SNPs_59177 0 0 1 0 1 EPHA8 chr1:22903373 5'GT 22903373 Upstream 76bp
chrX 40440283 40440283 1 + G C rs111632930 40440282 + 40440262 40440302 41 CGTGTCCCGCCGGCCCGTTCCGTGTCGCCCCGCAGTGCTGC CGTGTCCCGCCGGCCCGTTCCCTGTCGCCCCGCAGTGCTGC < 41bp 0.773577397993055 0.488550156344442 0.17520678 0.025587678 prediction 0.54715479598611 Functional Loss - ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40440282 chrX:40440283 nonsynonymous SNV 0.040 0 22 hm5C_associated_SNPs_59178 1 0 1 0 1 ATP6AP2 chrX:40440354 5'GT 40440354 Upstream 72bp
chr1 183155505 183155505 1 + G T SKCM 183155503 + 183155483 183155523 41 CCGCCATGCCTGCGCTCTGGCTGGGCTGCTGCCTCTGCTTC CCGCCATGCCTGCGCTCTGGCTTGGCTGCTGCCTCTGCTTC < 41bp 0.773577238644279 0.436583385030875 0.6050976 0.10004273 prediction 0.547154477288558 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183155503 chr1:183155505 synonymous SNV . 0 23 hm5C_associated_SNPs_59179 0 0 0 0 1 LAMC2 chr1:183155566 5'GT 183155566 Upstream 62bp
chr7 98984412 98984412 1 + G T UCEC 98984410 + 98984390 98984430 41 GGAGCACAACGGGCAGGTGACAGGTATGTCAGGGTGGCTGG GGAGCACAACGGGCAGGTGACATGTATGTCAGGGTGGCTGG < 41bp 0.880369064551692 0.606792058872678 0.75685394 0.40163618 prediction 0.547154011358029 Functional Loss - ARPC1B ENSG00000130429 CDS Human protein_coding chr7:98984410 chr7:98984412 nonsynonymous SNV 0.916 3 23 hm5C_associated_SNPs_59180 0 0 1 0 1 ARPC1B chr7:98984412 5'GT 98984412 Upstream 1bp
chr4 84457883 84457883 1 + G T UCEC 84457880 + 84457860 84457900 41 GGAGTGTCTCTGGGCATCTCCGAGATCTACATGAAGATCCT GGAGTGTCTCTGGGCATCTCCGATATCTACATGAAGATCCT < 41bp 0.773575798279583 0.392089469470653 0.63500386 0.048543572 prediction 0.547151596559166 Functional Loss - GPAT3 ENSG00000138678 CDS Human protein_coding chr4:84457880 chr4:84457883 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_59181 0 0 0 0 1 GPAT3 chr4:84457916 5'GT 84457916 Upstream 34bp
chr2 234527191 234527191 1 + G T PRAD 234527188 + 234527168 234527208 41 TTGGTGGTATCAACTGCCATCAGGGAAAGCCATTGCCTATG TTGGTGGTATCAACTGCCATCAGTGAAAGCCATTGCCTATG < 41bp 0.773572435692318 0.392098860665833 0.9314132 0.1650806 prediction 0.547144871384636 Functional Loss - UGT1A8 ENSG00000241635 CDS Human protein_coding chr2:234527188 chr2:234527191 stopgain 0.000 0 24 hm5C_associated_SNPs_59183 0 0 0 0 1 UGT1A8 chr2:234527208 5'GT 234527208 Upstream 18bp
chr19 6937361 6937361 1 + C T SKCM 6937359 + 6937339 6937379 41 GGTGTCATGGCTTACCTGTTCACCATCATCAACAGCCTGCA GGTGTCATGGCTTACCTGTTCATCATCATCAACAGCCTGCA < 41bp 0.792301026591059 0.51873141080833 0.03328401 0.019054681 prediction 0.547139231565459 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6937359 chr19:6937361 nonsynonymous SNV 0.981 3 23 hm5C_associated_SNPs_59185 0 0 0 0 1 ADGRE1 chr19:6937422 5'GT 6937422 Upstream 62bp
chr12 57180950 57180950 1 + A C COAD 57180946 + 57180926 57180966 41 GAAGGGCTGTTGAATTGTAGCACAAACCTGAACCTGGTCAC GAAGGGCTGTTGAATTGTAGCACACACCTGAACCTGGTCAC < 41bp 0.773564214506557 0.384406034356691 0.01853329 0.01644504 prediction 0.547128429013114 Functional Loss - HSD17B6 ENSG00000025423 CDS Human protein_coding chr12:57180946 chr12:57180950 nonsynonymous SNV 0.962 2 25 hm5C_associated_SNPs_59188 0 0 1 0 1 HSD17B6 chr12:57180909 3'AG 57180909 Downstream 42bp
chr3 49060541 49060541 1 + G T BLCA 49060538 + 49060518 49060558 41 GTGTCATGAAGGCCGAGTAACTGGAGCTGCTCTCATCCCTC GTGTCATGAAGGCCGAGTAACTGTAGCTGCTCTCATCCCTC < 41bp 0.861455463240619 0.58790695436534 0.90144974 0.4731363 prediction 0.547097017750558 Functional Loss - NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060538 chr3:49060541 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_59189 0 0 1 0 1 NDUFAF3 chr3:49060489 3'AG 49060489 Downstream 53bp
chr16 78062008 78062008 1 + G T ESCA 78062005 + 78061985 78062025 41 ACCCTAAAATTTTCCCCAGACAAGGATGGAGATCTGAAGAC ACCCTAAAATTTTCCCCAGACAATGATGGAGATCTGAAGAC < 41bp 0.773542999098804 0.401510792583846 0.12041223 0.15707958 prediction 0.547085998197607 Functional Loss - CLEC3A ENSG00000166509 CDS Human protein_coding chr16:78062005 chr16:78062008 nonsynonymous SNV 0.930 1 24 hm5C_associated_SNPs_59192 0 0 0 0 2 CLEC3A chr16:78062004 3'AG 78062004 Downstream 5bp
chr16 78062008 78062008 1 + G T ESCA 78062005 + 78061985 78062025 41 ACCCTAAAATTTTCCCCAGACAAGGATGGAGATCTGAAGAC ACCCTAAAATTTTCCCCAGACAATGATGGAGATCTGAAGAC < 41bp 0.773542999098804 0.401510792583846 0.12041223 0.15707958 prediction 0.547085998197607 Functional Loss - CLEC3A ENSG00000166509 CDS Human protein_coding chr16:78062005 chr16:78062008 nonsynonymous SNV 0.930 1 24 hm5C_associated_SNPs_59192 0 0 0 0 2 CLEC3A chr16:78062087 5'GT 78062087 Upstream 80bp
chr13 99992707 99992707 1 + G T UCEC 99992705 + 99992685 99992725 41 TCAGAACCCACCAGCGAAGCCAGAATTGGGATGGGAGCCAC TCAGAACCCACCAGCGAAGCCATAATTGGGATGGGAGCCAC < 41bp 0.852556587511587 0.57903056970049 0.3445113 0.22727722 prediction 0.547052035622193 Functional Loss - UBAC2 ENSG00000134882 CDS Human protein_coding chr13:99992705 chr13:99992707 nonsynonymous SNV 0.988 2 23 hm5C_associated_SNPs_59194 0 0 1 0 1 UBAC2 chr13:99992689 3'AG 99992689 Downstream 19bp
chr11 7335113 7335113 1 + G T LUSC 7335110 + 7335090 7335130 41 AAGTGGTGGTGGATCACTTCCTAGACTTGGCTGATTTCCCC AAGTGGTGGTGGATCACTTCCTATACTTGGCTGATTTCCCC < 41bp 0.773524524662224 0.412563105410577 0.23724559 0.1837543 prediction 0.547049049324448 Functional Loss - SYT9 ENSG00000170743 CDS Human protein_coding chr11:7335110 chr11:7335113 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_59196 0 0 1 0 1 SYT9 chr11:7335172 5'GT 7335172 Upstream 60bp
chr11 18723194 18723194 1 + G T UCEC 18723192 + 18723172 18723212 41 GCAGCCACTGGCTCTTCGGACAGGTCTGGTGATGGCAGCGC GCAGCCACTGGCTCTTCGGACATGTCTGGTGATGGCAGCGC < 41bp 0.773486935515815 0.42976604665598 0.47904316 0.30439064 prediction 0.546973871031629 Functional Loss - TMEM86A ENSG00000151117 CDS Human protein_coding chr11:18723192 chr11:18723194 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_59202 0 0 0 0 1 TMEM86A chr11:18723120 3'AG 18723120 Downstream 75bp
chr5 138160275 138160275 1 + G T STAD 138160273 + 138160253 138160293 41 CTGCAGCTAGAGGAATCCTGCAGAAGAACGTTCCGATCCTC CTGCAGCTAGAGGAATCCTGCATAAGAACGTTCCGATCCTC < 41bp 0.773465026514351 0.437967729361555 0.6386059 0.16153124 prediction 0.546930053028702 Functional Loss - CTNNA1 ENSG00000044115 CDS Human protein_coding chr5:138160273 chr5:138160275 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_59206 0 0 1 0 1 CTNNA1 chr5:138160219 3'AG 138160219 Downstream 57bp
chr1 150266814 150266814 1 + A T LIHC 150266810 + 150266790 150266830 41 GCAAAACATCTGAAGTTCATCGCCAGGACTGTGATGGTACA GCAAAACATCTGAAGTTCATCGCCTGGACTGTGATGGTACA < 41bp 0.846217316678936 0.572752342645506 0.33557504 0.21858352 prediction 0.54692994806686 Functional Loss - MRPS21 ENSG00000187145 CDS Human other chr1:150266810 chr1:150266814 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_59207 0 0 1 0 2 MRPS21 chr1:150266755 3'AG 150266755 Downstream 60bp
chr1 150266814 150266814 1 + A T LIHC 150266810 + 150266790 150266830 41 GCAAAACATCTGAAGTTCATCGCCAGGACTGTGATGGTACA GCAAAACATCTGAAGTTCATCGCCTGGACTGTGATGGTACA < 41bp 0.846217316678936 0.572752342645506 0.33557504 0.21858352 prediction 0.54692994806686 Functional Loss - MRPS21 ENSG00000187145 CDS Human other chr1:150266810 chr1:150266814 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_59207 0 0 1 0 2 MRPS21 chr1:150266869 5'GT 150266869 Upstream 56bp
chr6 35260388 35260388 1 + C T LUSC 35260386 + 35260366 35260406 41 GGGAAACGCTTCACCGAGTACTCGAGCTTGTATAAGCACCA GGGAAACGCTTCACCGAGTACTTGAGCTTGTATAAGCACCA < 41bp 0.78809452923659 0.514631301688422 0.23484164 0.15177116 prediction 0.546926455096338 Functional Loss - ZNF76 ENSG00000065029 CDS Human protein_coding chr6:35260386 chr6:35260388 nonsynonymous SNV 0.861 3 23 hm5C_associated_SNPs_59208 0 0 1 0 1 ZNF76 chr6:35260331 3'AG 35260331 Downstream 58bp
chr8 69020417 69020417 1 + G T UCEC 69020415 + 69020395 69020435 41 TCTAAAATCTCCCCACTGCACAGCAGTGATTTCTGCCCTAC TCTAAAATCTCCCCACTGCACATCAGTGATTTCTGCCCTAC < 41bp 0.84865590818412 0.575204882648616 0.2211841 0.11276317 prediction 0.546902051071009 Functional Loss - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69020415 chr8:69020417 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_59211 0 0 0 0 1 PREX2 chr8:69020344 3'AG 69020344 Downstream 74bp
chr7 44802527 44802527 1 + G T LUAD 44802524 + 44802504 44802544 41 GTGCACCGCCCATCCGTCCGCTCGGTGCTGCAGGGCCTCCT GTGCACCGCCCATCCGTCCGCTCTGTGCTGCAGGGCCTCCT < 41bp 0.773450346614255 0.385455319549504 0.20371452 0.20215428 prediction 0.546900693228511 Functional Loss - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44802524 chr7:44802527 synonymous SNV . 0 24 hm5C_associated_SNPs_59212 0 0 1 0 1 ZMIZ2 chr7:44802480 3'AG 44802480 Downstream 48bp
chr4 56883874 56883874 1 + C T BRCA 56883872 + 56883852 56883892 41 ATCAATGGCAAAAGCCATGTCTCGATTAGAAGAAGAGCTGA ATCAATGGCAAAAGCCATGTCTTGATTAGAAGAAGAGCTGA < 41bp 0.773446348918573 0.486641354407686 0.9086353 0.14098829 prediction 0.546892697837146 Functional Loss - CEP135 ENSG00000174799 CDS Human protein_coding chr4:56883872 chr4:56883874 stopgain 0.985 1 23 hm5C_associated_SNPs_59213 0 0 1 0 1 CEP135 chr4:56883814 3'AG 56883814 Downstream 61bp
chr20 52835595 52835595 1 + G T KIRC 52835592 + 52835572 52835612 41 AGAAATTGACGCCTTAGAATCCAGAGTGGAATCAATTCAGC AGAAATTGACGCCTTAGAATCCATAGTGGAATCAATTCAGC < 41bp 0.773426447740872 0.427388703744899 0.1805827 0.06004873 prediction 0.546852895481744 Functional Loss - PFDN4 ENSG00000101132 CDS Human protein_coding chr20:52835592 chr20:52835595 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_59217 0 0 1 0 1 PFDN4 chr20:52835558 3'AG 52835558 Downstream 38bp
chr1 221054572 221054572 1 + G T LUAD 221054569 + 221054549 221054589 41 GCTAACCGGTGGGCGGCCCGCCGGGGTGCACCTCTCAGGCC GCTAACCGGTGGGCGGCCCGCCGTGGTGCACCTCTCAGGCC < 41bp 0.909314100821285 0.635891139125093 0.9140153 0.14775023 prediction 0.546845923392384 Functional Loss - HLX ENSG00000136630 CDS Human protein_coding chr1:221054569 chr1:221054572 nonsynonymous SNV 0.264 4 24 hm5C_associated_SNPs_59218 0 0 0 0 1 HLX chr1:221054536 3'AG 221054536 Downstream 37bp
chr10 1034450 1034450 1 + G T HNSC 1034448 + 1034428 1034468 41 TTACAACTTCAAGAAAATTACGGTGGTGCCGTCCGCCAAGG TTACAACTTCAAGAAAATTACGTTGGTGCCGTCCGCCAAGG < 41bp 0.867216984530501 0.593819415562473 0.7726488 0.272767 prediction 0.546795137936058 Functional Loss - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1034448 chr10:1034450 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_59225 0 0 1 0 1 GTPBP4 chr10:1034467 5'GT 1034467 Upstream 18bp
chr11 1101072 1101072 1 + A T UCEC 1101068 + 1101048 1101088 41 AGTGGCATCATCTGCCAACCCAAGAGGTGCAGCCAGAAGCC AGTGGCATCATCTGCCAACCCAAGTGGTGCAGCCAGAAGCC < 41bp 0.773365040951156 0.486642954854911 0.73127395 0.721468 prediction 0.546730081902312 Functional Loss - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1101068 chr11:1101072 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_59227 0 0 0 0 2 MUC2 chr11:1100994 3'AG 1100994 Downstream 79bp
chr11 1101072 1101072 1 + A T UCEC 1101068 + 1101048 1101088 41 AGTGGCATCATCTGCCAACCCAAGAGGTGCAGCCAGAAGCC AGTGGCATCATCTGCCAACCCAAGTGGTGCAGCCAGAAGCC < 41bp 0.773365040951156 0.486642954854911 0.73127395 0.721468 prediction 0.546730081902312 Functional Loss - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1101068 chr11:1101072 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_59227 0 0 0 0 2 MUC2 chr11:1101171 5'GT 1101171 Upstream 100bp
chr8 27361252 27361252 1 + C T BLCA 27361250 + 27361230 27361270 41 GAAAGATCAACCGCCCCATGCTCCAGGCAGCTCTCATGCTC GAAAGATCAACCGCCCCATGCTTCAGGCAGCTCTCATGCTC < 41bp 0.773357673205226 0.480824069064664 0.54384553 0.038994133 prediction 0.546715346410452 Functional Loss - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27361250 chr8:27361252 synonymous SNV . 0 23 hm5C_associated_SNPs_59229 0 0 1 0 1 EPHX2 chr8:27361280 5'GT 27361280 Upstream 29bp
chr6 53660212 53660212 1 + A T KIRP 53660208 + 53660188 53660228 41 CCAACCAGCTCCGCGAGCTGCCCGAGGTAAGGGTCCGGCCT CCAACCAGCTCCGCGAGCTGCCCGTGGTAAGGGTCCGGCCT < 41bp 0.836659422002894 0.563308494046054 0.7690696 0.2269536 prediction 0.546701855913681 Functional Loss - LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53660208 chr6:53660212 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_59231 0 0 0 0 1 LRRC1 chr6:53660213 5'GT 53660213 Upstream 2bp
chr14 103571084 103571084 1 + G C CESC 103571083 + 103571063 103571103 41 CTTCGCTCGCAGCTCGTGGCCGAGCACGTGAAGGCGGCCGG CTTCGCTCGCAGCTCGTGGCCCAGCACGTGAAGGCGGCCGG < 41bp 0.814199925583761 0.540850998639295 0.80755824 0.40681827 prediction 0.546697853888932 Functional Loss - EXOC3L4 ENSG00000205436 CDS Human protein_coding chr14:103571083 chr14:103571084 nonsynonymous SNV 0.729 0 22 hm5C_associated_SNPs_59233 0 0 1 0 2 EXOC3L4 chr14:103571075 3'AG 103571075 Downstream 10bp
chr14 103571084 103571084 1 + G C CESC 103571083 + 103571063 103571103 41 CTTCGCTCGCAGCTCGTGGCCGAGCACGTGAAGGCGGCCGG CTTCGCTCGCAGCTCGTGGCCCAGCACGTGAAGGCGGCCGG < 41bp 0.814199925583761 0.540850998639295 0.80755824 0.40681827 prediction 0.546697853888932 Functional Loss - EXOC3L4 ENSG00000205436 CDS Human protein_coding chr14:103571083 chr14:103571084 nonsynonymous SNV 0.729 0 22 hm5C_associated_SNPs_59233 0 0 1 0 2 EXOC3L4 chr14:103571175 5'GT 103571175 Upstream 92bp
chr19 36128426 36128426 1 + G T UCEC 36128424 + 36128404 36128444 41 TGGACGTGGTCCGCAAGAAGCAGAAGGAAAAGAAGAAGCTG TGGACGTGGTCCGCAAGAAGCATAAGGAAAAGAAGAAGCTG < 41bp 0.857805645120258 0.584458014668413 0.8437059 0.36170664 prediction 0.54669526090369 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36128424 chr19:36128426 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_59234 0 0 1 0 1 RBM42 chr19:36128344 3'AG 36128344 Downstream 83bp
chr9 34996857 34996857 1 + C T COAD 34996855 + 34996835 34996875 41 TCTACAGTGCCCTGATCAGCCTCAAGGAGGTGGGGCCTAGT TCTACAGTGCCCTGATCAGCCTTAAGGAGGTGGGGCCTAGT < 41bp 0.777040900225684 0.50369441938687 0.17580974 0.16569787 prediction 0.546692961677628 Functional Loss - DNAJB5 ENSG00000137094 CDS Human protein_coding chr9:34996855 chr9:34996857 synonymous SNV . 0 23 hm5C_associated_SNPs_59235 0 0 0 0 1 DNAJB5 chr9:34996863 5'GT 34996863 Upstream 7bp
chr11 33566864 33566864 1 + A T ESCA 33566860 + 33566840 33566880 41 GCTGCATCGGCTGCAGTGGTCACGACTGGCAAAATGGCATC GCTGCATCGGCTGCAGTGGTCACGTCTGGCAAAATGGCATC < 41bp 0.773338951622345 0.456850952153574 0.33568788 0.5945851 prediction 0.546677903244689 Functional Loss - KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33566860 chr11:33566864 nonsynonymous SNV 0.012 0 25 hm5C_associated_SNPs_59236 0 0 0 0 1 KIAA1549L chr11:33566924 5'GT 33566924 Upstream 61bp
chr10 135369148 135369148 1 - G A rs547962258 135369150 - 135369130 135369170 41 TAGCAGCTGCTGCCCAGCGCCACCAGCAGCTGCAGCAGAAG TAGCAGCTGCTGCCCAGCGCCATCAGCAGCTGCAGCAGAAG < 41bp 0.773335642052656 0.491681563899693 0.12172875 0.02896744 prediction 0.546671284105311 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135369150 chr10:135369148 synonymous SNV . 0 23 hm5C_associated_SNPs_59237 0 0 0 0 2 SYCE1 chr10:135369101 5'GT 135369101 Upstream 48bp
chr10 135369148 135369148 1 - G A rs547962258 135369150 - 135369130 135369170 41 TAGCAGCTGCTGCCCAGCGCCACCAGCAGCTGCAGCAGAAG TAGCAGCTGCTGCCCAGCGCCATCAGCAGCTGCAGCAGAAG < 41bp 0.773335642052656 0.491681563899693 0.12172875 0.02896744 prediction 0.546671284105311 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135369150 chr10:135369148 synonymous SNV . 0 23 hm5C_associated_SNPs_59237 0 0 0 0 2 SYCE1 chr10:135369211 3'AG 135369211 Downstream 64bp
chr2 120362359 120362359 1 + G T PAAD 120362357 + 120362337 120362377 41 CGCCAGCGAAGCCGAAGCCTCAGAAGGTGAAGGTACGGTGG CGCCAGCGAAGCCGAAGCCTCATAAGGTGAAGGTACGGTGG < 41bp 0.864789663976534 0.591454257918347 0.7838333 0.26183486 prediction 0.546670812116374 Functional Loss - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120362357 chr2:120362359 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_59238 0 0 0 0 1 CFAP221 chr2:120362368 5'GT 120362368 Upstream 10bp
chr19 55047027 55047027 1 + G T COAD 55047024 + 55047004 55047044 41 TCCTGTAACGCCTGCCCATGCAGGAGCCTACAGATGCTGTG TCCTGTAACGCCTGCCCATGCAGTAGCCTACAGATGCTGTG < 41bp 0.89888628028902 0.62556051090977 0.89835024 0.260809 prediction 0.5466515387585 Functional Loss - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55047024 chr19:55047027 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_59239 0 0 0 0 1 KIR3DX1 chr19:55047110 5'GT 55047110 Upstream 84bp
chr16 50136288 50136288 1 + C T LGG 50136286 + 50136266 50136306 41 GGTAAAGAAGCCGAAAGAGCCTCGATTCAAATTAAATTATT GGTAAAGAAGCCGAAAGAGCCTTGATTCAAATTAAATTATT < 41bp 0.789923141388505 0.51663964867979 0.724085 0.04184103 prediction 0.54656698541743 Functional Loss - HEATR3 ENSG00000155393 CDS Human protein_coding chr16:50136286 chr16:50136288 nonsynonymous SNV 0.980 2 23 hm5C_associated_SNPs_59246 0 0 0 0 1 HEATR3 chr16:50136346 5'GT 50136346 Upstream 59bp
chr2 191233942 191233942 1 + G T LUAD 191233940 + 191233920 191233960 41 TGGTGTCTATGACATACAGACAGGGGTTCCCCTGATGGGAG TGGTGTCTATGACATACAGACATGGGTTCCCCTGATGGGAG < 41bp 0.77327981047203 0.431366825165947 0.91804284 0.32865512 prediction 0.54655962094406 Functional Loss - INPP1 ENSG00000151689 CDS Human protein_coding chr2:191233940 chr2:191233942 nonsynonymous SNV 0.958 4 23 hm5C_associated_SNPs_59247 0 0 0 0 1 INPP1 chr2:191234003 5'GT 191234003 Upstream 62bp
chr3 183755932 183755932 1 + C T SKCM 183755930 + 183755910 183755950 41 ACTGGAAAGTGGGAATTGTGCCCCATTCAAGATGACTGTTC ACTGGAAAGTGGGAATTGTGCCTCATTCAAGATGACTGTTC < 41bp 0.77760132812433 0.504322425935939 0.117571235 0.17584103 prediction 0.546557804376783 Functional Loss - HTR3D ENSG00000186090 CDS Human protein_coding chr3:183755930 chr3:183755932 nonsynonymous SNV 0.020 2 23 hm5C_associated_SNPs_59248 0 0 0 0 1 HTR3D chr3:183756027 5'GT 183756027 Upstream 96bp
chr1 40432312 40432312 1 + A C COAD 40432308 + 40432288 40432328 41 CTGGCAGCGGGGGTCATTGTCTGTATCTATATAATCTGTGC CTGGCAGCGGGGGTCATTGTCTGTCTCTATATAATCTGTGC < 41bp 0.773278565619098 0.357351549782399 0.18762955 0.021392584 prediction 0.546557131238196 Functional Loss - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40432308 chr1:40432312 nonsynonymous SNV 0.673 1 25 hm5C_associated_SNPs_59249 0 0 0 1 3 MFSD2A chr1:40432273 3'AG 40432273 Downstream 40bp
chr1 40432312 40432312 1 + A C COAD 40432308 + 40432288 40432328 41 CTGGCAGCGGGGGTCATTGTCTGTATCTATATAATCTGTGC CTGGCAGCGGGGGTCATTGTCTGTCTCTATATAATCTGTGC < 41bp 0.773278565619098 0.357351549782399 0.18762955 0.021392584 prediction 0.546557131238196 Functional Loss - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40432308 chr1:40432312 nonsynonymous SNV 0.673 1 25 hm5C_associated_SNPs_59249 0 0 0 1 3 MFSD2A chr1:40432279 3'AG 40432279 Downstream 34bp
chr1 40432312 40432312 1 + A C COAD 40432308 + 40432288 40432328 41 CTGGCAGCGGGGGTCATTGTCTGTATCTATATAATCTGTGC CTGGCAGCGGGGGTCATTGTCTGTCTCTATATAATCTGTGC < 41bp 0.773278565619098 0.357351549782399 0.18762955 0.021392584 prediction 0.546557131238196 Functional Loss - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40432308 chr1:40432312 nonsynonymous SNV 0.673 1 25 hm5C_associated_SNPs_59249 0 0 0 1 3 MFSD2A chr1:40432363 5'GT 40432363 Upstream 52bp
chr3 169985788 169985788 1 + G T ESCA 169985785 + 169985765 169985805 41 TTCCAAGCCAAGCGTTTCAACAGGGTAAACATAGTTTGTTG TTCCAAGCCAAGCGTTTCAACAGTGTAAACATAGTTTGTTG < 41bp 0.773265082767084 0.418179723880382 0.90689206 0.062146038 prediction 0.546530165534167 Functional Loss - PRKCI ENSG00000163558 CDS Human protein_coding chr3:169985785 chr3:169985788 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_59250 0 0 1 0 2 PRKCI chr3:169985703 3'AG 169985703 Downstream 86bp
chr3 169985788 169985788 1 + G T ESCA 169985785 + 169985765 169985805 41 TTCCAAGCCAAGCGTTTCAACAGGGTAAACATAGTTTGTTG TTCCAAGCCAAGCGTTTCAACAGTGTAAACATAGTTTGTTG < 41bp 0.773265082767084 0.418179723880382 0.90689206 0.062146038 prediction 0.546530165534167 Functional Loss - PRKCI ENSG00000163558 CDS Human protein_coding chr3:169985785 chr3:169985788 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_59250 0 0 1 0 2 PRKCI chr3:169985788 3'AG 169985788 Downstream 1bp
chr11 119155697 119155697 1 + C T LUSC 119155695 + 119155675 119155715 41 CTAGGTGGAACGGCCGCCTTCTCCATTCTCCATGGCCCCAC CTAGGTGGAACGGCCGCCTTCTTCATTCTCCATGGCCCCAC < 41bp 0.803472594140821 0.530208576425718 0.96010333 0.2001921 prediction 0.546528035430207 Functional Loss - CBL ENSG00000110395 CDS Human protein_coding chr11:119155695 chr11:119155697 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_59251 0 0 1 0 1 CBL chr11:119155679 3'AG 119155679 Downstream 19bp
chr6 25701473 25701473 1 + G T COAD 25701470 + 25701450 25701490 41 GTGGACCTTGATAAGTTCCGCGAGATTCTCCTGCGTCACTG GTGGACCTTGATAAGTTCCGCGATATTCTCCTGCGTCACTG < 41bp 0.897832351032535 0.624571067228189 0.83042306 0.38661352 prediction 0.546522567608692 Functional Loss - SCGN ENSG00000079689 CDS Human protein_coding chr6:25701470 chr6:25701473 nonsynonymous SNV 0.977 0 24 hm5C_associated_SNPs_59252 0 0 0 0 1 SCGN chr6:25701435 3'AG 25701435 Downstream 39bp
chr22 45923784 45923784 1 + G C LUAD 45923780 + 45923760 45923800 41 GCCCAGGCCCAGGGCCAGAGCTGCGAGTACAGCCTCATGGT GCCCAGGCCCAGGGCCAGAGCTGCCAGTACAGCCTCATGGT < 41bp 0.810563753496399 0.537311426479187 0.51792985 0.2976827 prediction 0.546504654034423 Functional Loss - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45923780 chr22:45923784 nonsynonymous SNV 0.129 4 25 hm5C_associated_SNPs_59254 0 0 1 0 1 FBLN1 chr22:45923727 3'AG 45923727 Downstream 58bp
chr11 43918868 43918868 1 + G T UCEC 43918865 + 43918845 43918885 41 CCCAGGCCCAGCCATTCTGACAAGAACTAGACTTTGGGCTC CCCAGGCCCAGCCATTCTGACAATAACTAGACTTTGGGCTC < 41bp 0.773237527892741 0.392215597730421 0.71461326 0.20248446 prediction 0.546475055785482 Functional Loss - SEC14L1P1 ENSG00000166199 CDS Human protein_coding chr11:43918865 chr11:43918868 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_59256 0 0 1 1 1 SEC14L1P1 chr11:43918904 5'GT 43918904 Upstream 37bp
chr19 38573722 38573722 1 + A T STAD 38573718 + 38573698 38573738 41 ACCTGGGCGCCCGCTACTACCAGGATTACTTCGTGGGCAAA ACCTGGGCGCCCGCTACTACCAGGTTTACTTCGTGGGCAAA < 41bp 0.773221561900528 0.476387900202554 0.9259673 0.9067379 prediction 0.546443123801055 Functional Loss - SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38573718 chr19:38573722 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_59257 0 0 0 0 1 SIPA1L3 chr19:38573739 5'GT 38573739 Upstream 18bp
chr14 74036534 74036534 1 + G C LUAD 74036533 + 74036513 74036553 41 ACTTCCTCCCGCCCGGGGTGCGGCGCGAGCCGGTGCGCGTG ACTTCCTCCCGCCCGGGGTGCCGCGCGAGCCGGTGCGCGTG < 41bp 0.812706182503727 0.539498192898514 0.84999824 0.58512944 prediction 0.546415979210426 Functional Loss - ACOT2 ENSG00000119673 CDS Human protein_coding chr14:74036533 chr14:74036534 nonsynonymous SNV 0.021 2 22 hm5C_associated_SNPs_59259 0 0 1 0 1 ACOT2 chr14:74036587 5'GT 74036587 Upstream 54bp
chr14 31091521 31091521 1 + G T SARC 31091519 + 31091499 31091539 41 CCCCCCGCTCCGCTCCCCAGCCGGGCAGTGGCTCGTGGGAG CCCCCCGCTCCGCTCCCCAGCCTGGCAGTGGCTCGTGGGAG < 41bp 0.812275137767235 0.539078447339394 0.8009377 0.022955477 prediction 0.546393380855683 Functional Loss - SCFD1 ENSG00000092108 UTR5 Human protein_coding chr14:31091519 chr14:31091521 . . 0 23 hm5C_associated_SNPs_59261 0 0 1 0 1 SCFD1 chr14:31091605 5'GT 31091605 Upstream 85bp
chr12 3649865 3649865 1 + G T STAD 3649863 + 3649843 3649883 41 GTCCACTCAACCCAGCTGCCCAGGACGGGGCAAGATGTCCA GTCCACTCAACCCAGCTGCCCATGACGGGGCAAGATGTCCA < 41bp 0.773180397961881 0.420262155261299 0.2176024 0.047717243 prediction 0.546360795923762 Functional Loss - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3649863 chr12:3649865 stopgain 0.984 1 23 hm5C_associated_SNPs_59266 0 0 0 0 2 PRMT8 chr12:3649772 3'AG 3649772 Downstream 94bp
chr12 3649865 3649865 1 + G T STAD 3649863 + 3649843 3649883 41 GTCCACTCAACCCAGCTGCCCAGGACGGGGCAAGATGTCCA GTCCACTCAACCCAGCTGCCCATGACGGGGCAAGATGTCCA < 41bp 0.773180397961881 0.420262155261299 0.2176024 0.047717243 prediction 0.546360795923762 Functional Loss - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3649863 chr12:3649865 stopgain 0.984 1 23 hm5C_associated_SNPs_59266 0 0 0 0 2 PRMT8 chr12:3649957 5'GT 3649957 Upstream 93bp
chr15 66621357 66621357 1 + G T UCEC 66621354 + 66621334 66621374 41 TGGATAATGCGAACGACCCCCACGATCCCATTGTGAACAGG TGGATAATGCGAACGACCCCCACTATCCCATTGTGAACAGG < 41bp 0.773168550781986 0.389286109109629 0.1415788 0.05446744 prediction 0.546337101563972 Functional Loss - DIS3L ENSG00000166938 CDS Human protein_coding chr15:66621354 chr15:66621357 nonsynonymous SNV 0.060 4 24 hm5C_associated_SNPs_59270 0 0 0 0 1 DIS3L chr15:66621308 3'AG 66621308 Downstream 50bp
chr1 198711064 198711064 1 + G C LGG 198711060 + 198711040 198711080 41 TTCACCAGCTGGCCAGACCACGGGGTGCCTGAGGATCCTCA TTCACCAGCTGGCCAGACCACGGGCTGCCTGAGGATCCTCA < 41bp 0.773156180011575 0.498561599863771 0.9037093 0.61793435 prediction 0.54631236002315 Functional Loss - PTPRC ENSG00000081237 CDS Human protein_coding chr1:198711060 chr1:198711064 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_59273 0 0 1 0 2 PTPRC chr1:198710998 3'AG 198710998 Downstream 67bp
chr1 198711064 198711064 1 + G C LGG 198711060 + 198711040 198711080 41 TTCACCAGCTGGCCAGACCACGGGGTGCCTGAGGATCCTCA TTCACCAGCTGGCCAGACCACGGGCTGCCTGAGGATCCTCA < 41bp 0.773156180011575 0.498561599863771 0.9037093 0.61793435 prediction 0.54631236002315 Functional Loss - PTPRC ENSG00000081237 CDS Human protein_coding chr1:198711060 chr1:198711064 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_59273 0 0 1 0 2 PTPRC chr1:198711155 5'GT 198711155 Upstream 92bp
chr22 40757339 40757339 1 + G T SARC 40757337 + 40757317 40757357 41 TGGAGGAACCCTTTGAAAAACAGCAGATTGGTGAGTGCTGT TGGAGGAACCCTTTGAAAAACATCAGATTGGTGAGTGCTGT < 41bp 0.857934865999246 0.584786513586724 0.29927793 0.17042536 prediction 0.546296704825044 Functional Loss - ADSL ENSG00000239900 CDS Human protein_coding chr22:40757337 chr22:40757339 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_59274 0 0 1 0 2 ADSL chr22:40757277 3'AG 40757277 Downstream 63bp
chr22 40757339 40757339 1 + G T SARC 40757337 + 40757317 40757357 41 TGGAGGAACCCTTTGAAAAACAGCAGATTGGTGAGTGCTGT TGGAGGAACCCTTTGAAAAACATCAGATTGGTGAGTGCTGT < 41bp 0.857934865999246 0.584786513586724 0.29927793 0.17042536 prediction 0.546296704825044 Functional Loss - ADSL ENSG00000239900 CDS Human protein_coding chr22:40757337 chr22:40757339 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_59274 0 0 1 0 2 ADSL chr22:40757346 5'GT 40757346 Upstream 8bp
chr19 55086935 55086935 1 + G T LUAD 55086932 + 55086912 55086952 41 TGGGCCCTGTGAGCCCCTCCCACGGGGGCCAGTACAGATGC TGGGCCCTGTGAGCCCCTCCCACTGGGGCCAGTACAGATGC < 41bp 0.905775281981427 0.632638105810425 0.49633786 0.10547486 prediction 0.546274352342004 Functional Loss - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55086932 chr19:55086935 nonsynonymous SNV 0.000 3 24 hm5C_associated_SNPs_59276 0 0 0 0 1 LILRA2 chr19:55087019 5'GT 55087019 Upstream 85bp
chr2 47637473 47637473 1 + G T LUAD 47637471 + 47637451 47637491 41 ACCAAAGGAATGTGTTTTACCCGGAGGAGAGACTGCTGGAG ACCAAAGGAATGTGTTTTACCCTGAGGAGAGACTGCTGGAG < 41bp 0.837806138569236 0.564677190289751 0.8777044 0.17158669 prediction 0.54625789655897 Functional Loss - MSH2 ENSG00000095002 CDS Human protein_coding chr2:47637471 chr2:47637473 stopgain 0.998 0 23 hm5C_associated_SNPs_59279 0 0 1 0 1 MSH2 chr2:47637511 5'GT 47637511 Upstream 39bp
chrX 54837309 54837309 1 + G T LUSC 54837306 + 54837286 54837326 41 CAGTGATCAGAGTCAGGCTTCTGGAACCACAGGTGGCCGAA CAGTGATCAGAGTCAGGCTTCTGTAACCACAGGTGGCCGAA < 41bp 0.901639483880639 0.628517707609589 0.82851046 0.39404953 prediction 0.546243552542099 Functional Loss - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54837306 chrX:54837309 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_59280 0 0 1 0 1 MAGED2 chrX:54837254 3'AG 54837254 Downstream 56bp
chr12 56487586 56487586 1 + G T LIHC 56487584 + 56487564 56487604 41 GTGTGACCCACTGTGCTCCTCTGGGGGATGCTGGGGCCCAG GTGTGACCCACTGTGCTCCTCTTGGGGATGCTGGGGCCCAG < 41bp 0.870395170847005 0.597281805464437 0.87920725 0.40572876 prediction 0.546226730765136 Functional Loss - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56487584 chr12:56487586 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_59282 0 0 0 0 1 ERBB3 chr12:56487680 5'GT 56487680 Upstream 95bp
chr6 42993784 42993784 1 + G T BLCA 42993781 + 42993761 42993801 41 TCTTCTCTCCAAAGGTAGCCCGGGACCCTCGCTTTGATGAT TCTTCTCTCCAAAGGTAGCCCGGTACCCTCGCTTTGATGAT < 41bp 0.773111986960561 0.383542008293058 0.80283374 0.3047951 prediction 0.546223973921122 Functional Loss - RRP36 ENSG00000124541 CDS Human protein_coding chr6:42993781 chr6:42993784 nonsynonymous SNV 0.975 5 24 hm5C_associated_SNPs_59283 0 0 1 0 2 RRP36 chr6:42993775 3'AG 42993775 Downstream 10bp
chr6 42993784 42993784 1 + G T BLCA 42993781 + 42993761 42993801 41 TCTTCTCTCCAAAGGTAGCCCGGGACCCTCGCTTTGATGAT TCTTCTCTCCAAAGGTAGCCCGGTACCCTCGCTTTGATGAT < 41bp 0.773111986960561 0.383542008293058 0.80283374 0.3047951 prediction 0.546223973921122 Functional Loss - RRP36 ENSG00000124541 CDS Human protein_coding chr6:42993781 chr6:42993784 nonsynonymous SNV 0.975 5 24 hm5C_associated_SNPs_59283 0 0 1 0 2 RRP36 chr6:42993879 5'GT 42993879 Upstream 96bp
chr7 148427288 148427288 1 + G T LUAD 148427286 + 148427266 148427306 41 GACCAGATCTGGGACGACCTCAGAGCCGGCATCCAGCAGGT GACCAGATCTGGGACGACCTCATAGCCGGCATCCAGCAGGT < 41bp 0.872453931440387 0.599353688674934 0.71738267 0.06496894 prediction 0.546200485530907 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148427286 chr7:148427288 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_59284 0 0 1 0 1 CUL1 chr7:148427354 5'GT 148427354 Upstream 67bp
chr11 124743686 124743686 1 + G T SARC 124743684 + 124743664 124743704 41 GTCACTGAGATCACCAAGAACAGCATTACCCTGACCTGGAA GTCACTGAGATCACCAAGAACATCATTACCCTGACCTGGAA < 41bp 0.773082633646626 0.444078837140821 0.28496835 0.12754288 prediction 0.546165267293251 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124743684 chr11:124743686 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_59285 0 0 0 0 2 ROBO3 chr11:124743593 3'AG 124743593 Downstream 94bp
chr11 124743686 124743686 1 + G T SARC 124743684 + 124743664 124743704 41 GTCACTGAGATCACCAAGAACAGCATTACCCTGACCTGGAA GTCACTGAGATCACCAAGAACATCATTACCCTGACCTGGAA < 41bp 0.773082633646626 0.444078837140821 0.28496835 0.12754288 prediction 0.546165267293251 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124743684 chr11:124743686 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_59285 0 0 0 0 2 ROBO3 chr11:124743758 5'GT 124743758 Upstream 73bp
chr11 60635223 60635223 1 + G T UCEC 60635220 + 60635200 60635240 41 CCAGGCCAGACTCTCCGCTTCAAGGTGGTGGGTGAGTGCTG CCAGGCCAGACTCTCCGCTTCAATGTGGTGGGTGAGTGCTG < 41bp 0.773063075108781 0.381839523675692 0.658712 0.24316111 prediction 0.546126150217562 Functional Loss - ZP1 ENSG00000149506 CDS Human protein_coding chr11:60635220 chr11:60635223 nonsynonymous SNV 0.877 3 24 hm5C_associated_SNPs_59287 0 0 0 0 1 ZP1 chr11:60635230 5'GT 60635230 Upstream 8bp
chr1 31194488 31194488 1 + C T CESC 31194486 + 31194466 31194506 41 TTGGGCCCCACGTCCAGCGACTCGATGACCTGGGACAGGAA TTGGGCCCCACGTCCAGCGACTTGATGACCTGGGACAGGAA < 41bp 0.774189235823907 0.50112840044931 0.260809 0.10437763 prediction 0.546121670749194 Functional Loss - MATN1 ENSG00000162510 CDS Human protein_coding chr1:31194486 chr1:31194488 nonsynonymous SNV 0.520 0 23 hm5C_associated_SNPs_59289 0 0 1 0 1 MATN1 chr1:31194569 5'GT 31194569 Upstream 82bp
chr1 171173121 171173121 1 + C T rs2020866 171173119 + 171173099 171173139 41 TATGCTCCGCAATGTACTGCCACGAACAGCTGTAAAATGGA TATGCTCCGCAATGTACTGCCATGAACAGCTGTAAAATGGA < 41bp 0.775753823160231 0.502701837693191 0.3638957 0.24002904 prediction 0.54610397093408 Functional Loss - FMO2 ENSG00000094963 CDS Human protein_coding chr1:171173119 chr1:171173121 stopgain 0.001 0 23 hm5C_associated_SNPs_59290 0 0 0 0 1 FMO2 chr1:171173203 5'GT 171173203 Upstream 83bp
chr9 125047485 125047485 1 + G T LUAD 125047482 + 125047462 125047502 41 ATTGCTGTGGTAACTGCTGACGGGAAGCTTGCTTTAAACCA ATTGCTGTGGTAACTGCTGACGGTAAGCTTGCTTTAAACCA < 41bp 0.897801713966541 0.62475611403771 0.42327225 0.16857344 prediction 0.546091199857661 Functional Loss - MRRF ENSG00000148187 CDS Human protein_coding chr9:125047482 chr9:125047485 synonymous SNV . 0 24 hm5C_associated_SNPs_59291 0 0 1 0 2 MRRF chr9:125047448 3'AG 125047448 Downstream 38bp
chr9 125047485 125047485 1 + G T LUAD 125047482 + 125047462 125047502 41 ATTGCTGTGGTAACTGCTGACGGGAAGCTTGCTTTAAACCA ATTGCTGTGGTAACTGCTGACGGTAAGCTTGCTTTAAACCA < 41bp 0.897801713966541 0.62475611403771 0.42327225 0.16857344 prediction 0.546091199857661 Functional Loss - MRRF ENSG00000148187 CDS Human protein_coding chr9:125047482 chr9:125047485 synonymous SNV . 0 24 hm5C_associated_SNPs_59291 0 0 1 0 2 MRRF chr9:125047566 5'GT 125047566 Upstream 82bp
chr4 38023260 38023260 1 + G T PAAD 38023258 + 38023238 38023278 41 CCTTCACGGTGGCCGCAGTGCAGCAGACAGCTAAGGCGCCA CCTTCACGGTGGCCGCAGTGCATCAGACAGCTAAGGCGCCA < 41bp 0.860082650149205 0.587052001485694 0.37576848 0.22481906 prediction 0.546061297327021 Functional Loss - TBC1D1 ENSG00000065882 CDS Human protein_coding chr4:38023258 chr4:38023260 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_59293 0 0 1 0 1 TBC1D1 chr4:38023207 3'AG 38023207 Downstream 54bp
chr9 95846863 95846863 1 + G T SARC 95846861 + 95846841 95846881 41 AAGCTGGCCAGTGTGACCCGCAGCGTGGACAAGGACCCTGG AAGCTGGCCAGTGTGACCCGCATCGTGGACAAGGACCCTGG < 41bp 0.773028510560721 0.440805470581306 0.46700478 0.18840474 prediction 0.546057021121442 Functional Loss - SUSD3 ENSG00000157303 CDS Human protein_coding chr9:95846861 chr9:95846863 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_59294 0 0 0 0 1 SUSD3 chr9:95846819 3'AG 95846819 Downstream 45bp
chr5 161569272 161569272 1 + G T LUSC 161569270 + 161569250 161569290 41 ACACTCATTGTCGTCCTATCCTGGGTGTCTTTCTGGATCAA ACACTCATTGTCGTCCTATCCTTGGTGTCTTTCTGGATCAA < 41bp 0.862263243604607 0.589242336359058 0.7637377 0.06469157 prediction 0.546041814491097 Functional Loss - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161569270 chr5:161569272 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_59295 0 0 0 0 1 GABRG2 chr5:161569322 5'GT 161569322 Upstream 51bp
chr22 45258238 45258238 1 + G T LUSC 45258236 + 45258216 45258256 41 TGAATTTGATCTGGCCATCCCAGGGGGTCTCCTCCCTGAGT TGAATTTGATCTGGCCATCCCATGGGGTCTCCTCCCTGAGT < 41bp 0.862846157546187 0.589858828304746 0.9563409 0.6032394 prediction 0.545974658482883 Functional Loss - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45258236 chr22:45258238 nonsynonymous SNV 0.266 0 23 hm5C_associated_SNPs_59301 0 0 0 0 1 ARHGAP8;PRR5-ARHGAP8 chr22:45258155 3'AG 45258155 Downstream 84bp
chr5 55083782 55083782 1 + G T UCEC 55083779 + 55083759 55083799 41 GTATTATTGTAGCACCAACTCGAGAATTGGTCAACCAGATT GTATTATTGTAGCACCAACTCGATAATTGGTCAACCAGATT < 41bp 0.772929541518261 0.410027649597738 0.47917604 0.17410228 prediction 0.545859083036522 Functional Loss - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55083779 chr5:55083782 stopgain 1.000 1 24 hm5C_associated_SNPs_59308 0 0 0 0 1 DDX4 chr5:55083828 5'GT 55083828 Upstream 47bp
chr1 40881913 40881913 1 + G T LUAD 40881911 + 40881891 40881931 41 CTGAAAATCTGAACCTGTTTCCGGAGCCAGGGAGCAAATCA CTGAAAATCTGAACCTGTTTCCTGAGCCAGGGAGCAAATCA < 41bp 0.772917448472128 0.441353261120223 0.85101676 0.061647117 prediction 0.545834896944255 Functional Loss - SMAP2 ENSG00000084070 CDS Human protein_coding chr1:40881911 chr1:40881913 synonymous SNV . 0 23 hm5C_associated_SNPs_59310 0 0 1 0 1 SMAP2 chr1:40881848 3'AG 40881848 Downstream 66bp
chr1 47610065 47610065 1 + A C rs6661132 47610061 + 47610041 47610081 41 AACTGAGGAAGGCTCAACTACAGAAGGAGGGGGAGCTGGAG AACTGAGGAAGGCTCAACTACAGACGGAGGGGGAGCTGGAG < 41bp 0.772900654710566 0.367036218317009 0.63653684 0.73121595 prediction 0.545801309421131 Functional Loss - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47610061 chr1:47610065 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_59311 0 0 0 0 2 CYP4A22 chr1:47610029 3'AG 47610029 Downstream 37bp
chr1 47610065 47610065 1 + A C rs6661132 47610061 + 47610041 47610081 41 AACTGAGGAAGGCTCAACTACAGAAGGAGGGGGAGCTGGAG AACTGAGGAAGGCTCAACTACAGACGGAGGGGGAGCTGGAG < 41bp 0.772900654710566 0.367036218317009 0.63653684 0.73121595 prediction 0.545801309421131 Functional Loss - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47610061 chr1:47610065 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_59311 0 0 0 0 2 CYP4A22 chr1:47610135 5'GT 47610135 Upstream 71bp
chr19 50926214 50926214 1 + G T COAD 50926212 + 50926192 50926232 41 ACCCCCCACCTACAGCCCTGCAGGGAACCTCGAACTGGCCC ACCCCCCACCTACAGCCCTGCATGGAACCTCGAACTGGCCC < 41bp 0.772895324525145 0.410416687196654 0.899275 0.18583813 prediction 0.54579064905029 Functional Loss - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50926212 chr19:50926214 nonsynonymous SNV 0.012 2 23 hm5C_associated_SNPs_59314 0 0 0 0 1 SPIB chr19:50926294 5'GT 50926294 Upstream 81bp
chr1 113657094 113657094 1 + G C LUSC 113657093 + 113657073 113657113 41 TGGAGGATAAGACAGTAACACGAGGTGAAACTGCGGTGTTA TGGAGGATAAGACAGTAACACCAGGTGAAACTGCGGTGTTA < 41bp 0.772892773281259 0.47524135941685 0.93813765 0.93243337 prediction 0.545785546562518 Functional Loss - LRIG2 ENSG00000198799 CDS Human protein_coding chr1:113657093 chr1:113657094 nonsynonymous SNV 0.931 1 22 hm5C_associated_SNPs_59316 0 0 1 0 1 LRIG2 chr1:113657049 3'AG 113657049 Downstream 46bp
chr13 41373280 41373280 1 + C T UCEC 41373278 + 41373258 41373298 41 CCTGACCTGTACCGGGGCCTCACCGACTGCTGCCTGAAGAC CCTGACCTGTACCGGGGCCTCATCGACTGCTGCCTGAAGAC < 41bp 0.780092496219741 0.507206971743236 0.29370713 0.27952543 prediction 0.54577104895301 Functional Loss - SLC25A15 ENSG00000102743 CDS Human protein_coding chr13:41373278 chr13:41373280 nonsynonymous SNV 0.884 0 23 hm5C_associated_SNPs_59317 0 0 1 0 1 SLC25A15 chr13:41373193 3'AG 41373193 Downstream 88bp
chr11 281741 281741 1 + A C LUSC 281737 + 281717 281757 41 CTGCGTGAGGTGCTGCCCTGCTGGACAGGCACTGCGGCTGA CTGCGTGAGGTGCTGCCCTGCTGGCCAGGCACTGCGGCTGA < 41bp 0.905159909176353 0.632276620370061 0.26581553 0.15176913 prediction 0.545766577612582 Functional Loss - NLRP6 ENSG00000174885 CDS Human protein_coding chr11:281737 chr11:281741 synonymous SNV . 0 25 hm5C_associated_SNPs_59318 0 0 0 0 1 NLRP6 chr11:281839 5'GT 281839 Upstream 99bp
chr11 15212360 15212360 1 + G T LUSC 15212357 + 15212337 15212377 41 CCCTTGTGCCGCATCATAGCCAAGGTGAGCTTCATGGTTAG CCCTTGTGCCGCATCATAGCCAATGTGAGCTTCATGGTTAG < 41bp 0.772882792708641 0.377702689555704 0.8831977 0.23308343 prediction 0.545765585417282 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15212357 chr11:15212360 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_59319 0 0 0 0 1 INSC chr11:15212360 5'GT 15212360 Upstream 1bp
chr15 43483198 43483198 1 + G T UCEC 43483195 + 43483175 43483215 41 GCAGCTCTTTTGATGCTGACCAAGAATGTGGATTTTGTGAA GCAGCTCTTTTGATGCTGACCAATAATGTGGATTTTGTGAA < 41bp 0.772882349371424 0.405992618587669 0.14189026 0.08397004 prediction 0.545764698742847 Functional Loss - CCNDBP1 ENSG00000166946 CDS Human protein_coding chr15:43483195 chr15:43483198 nonsynonymous SNV 0.965 0 24 hm5C_associated_SNPs_59320 0 0 1 0 2 CCNDBP1 chr15:43483164 3'AG 43483164 Downstream 35bp
chr15 43483198 43483198 1 + G T UCEC 43483195 + 43483175 43483215 41 GCAGCTCTTTTGATGCTGACCAAGAATGTGGATTTTGTGAA GCAGCTCTTTTGATGCTGACCAATAATGTGGATTTTGTGAA < 41bp 0.772882349371424 0.405992618587669 0.14189026 0.08397004 prediction 0.545764698742847 Functional Loss - CCNDBP1 ENSG00000166946 CDS Human protein_coding chr15:43483195 chr15:43483198 nonsynonymous SNV 0.965 0 24 hm5C_associated_SNPs_59320 0 0 1 0 2 CCNDBP1 chr15:43483240 5'GT 43483240 Upstream 43bp
chr2 201488678 201488678 1 + A T LUSC 201488674 + 201488654 201488694 41 AGCGAGTGAAGATTGTCTATCAAGACTTGGAGCCGCTGATA AGCGAGTGAAGATTGTCTATCAAGTCTTGGAGCCGCTGATA < 41bp 0.772878708451743 0.460613212661727 0.9026935 0.7681663 prediction 0.545757416903486 Functional Loss - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201488674 chr2:201488678 nonsynonymous SNV 0.941 2 25 hm5C_associated_SNPs_59321 0 0 0 0 2 AOX1 chr2:201488584 3'AG 201488584 Downstream 95bp
chr2 201488678 201488678 1 + A T LUSC 201488674 + 201488654 201488694 41 AGCGAGTGAAGATTGTCTATCAAGACTTGGAGCCGCTGATA AGCGAGTGAAGATTGTCTATCAAGTCTTGGAGCCGCTGATA < 41bp 0.772878708451743 0.460613212661727 0.9026935 0.7681663 prediction 0.545757416903486 Functional Loss - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201488674 chr2:201488678 nonsynonymous SNV 0.941 2 25 hm5C_associated_SNPs_59321 0 0 0 0 2 AOX1 chr2:201488706 5'GT 201488706 Upstream 29bp
chr15 91500925 91500925 1 + G T rs149096037 91500923 + 91500903 91500943 41 CCTAGTCATGGCTGAGGTGGCCGCGGGGGGCTGGCATTCTG CCTAGTCATGGCTGAGGTGGCCTCGGGGGGCTGGCATTCTG < 41bp 0.772875388263323 0.426850636724396 0.88994306 0.8094263 prediction 0.545750776526646 Functional Loss - RCCD1 ENSG00000166965 CDS Human protein_coding chr15:91500923 chr15:91500925 nonsynonymous SNV 0.907 5 23 hm5C_associated_SNPs_59322 0 0 1 0 2 RCCD1 chr15:91500834 3'AG 91500834 Downstream 92bp
chr15 91500925 91500925 1 + G T rs149096037 91500923 + 91500903 91500943 41 CCTAGTCATGGCTGAGGTGGCCGCGGGGGGCTGGCATTCTG CCTAGTCATGGCTGAGGTGGCCTCGGGGGGCTGGCATTCTG < 41bp 0.772875388263323 0.426850636724396 0.88994306 0.8094263 prediction 0.545750776526646 Functional Loss - RCCD1 ENSG00000166965 CDS Human protein_coding chr15:91500923 chr15:91500925 nonsynonymous SNV 0.907 5 23 hm5C_associated_SNPs_59322 0 0 1 0 2 RCCD1 chr15:91500955 5'GT 91500955 Upstream 31bp
chr1 76256985 76256985 1 + G T UCEC 76256982 + 76256962 76257002 41 TATTGTAGGAGAAATTGACACAAGATTCTCTTTTTGTGCGG TATTGTAGGAGAAATTGACACAATATTCTCTTTTTGTGCGG < 41bp 0.883742991256277 0.610872892667624 0.33391717 0.15119082 prediction 0.545740197177305 Functional Loss - RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76256982 chr1:76256985 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_59324 0 0 1 1 2 RABGGTB chr1:76256970 3'AG 76256970 Downstream 16bp
chr1 76256985 76256985 1 + G T UCEC 76256982 + 76256962 76257002 41 TATTGTAGGAGAAATTGACACAAGATTCTCTTTTTGTGCGG TATTGTAGGAGAAATTGACACAATATTCTCTTTTTGTGCGG < 41bp 0.883742991256277 0.610872892667624 0.33391717 0.15119082 prediction 0.545740197177305 Functional Loss - RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76256982 chr1:76256985 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_59324 0 0 1 1 2 RABGGTB chr1:76257022 5'GT 76257022 Upstream 38bp
chr7 63529967 63529967 1 + A C STAD 63529963 + 63529943 63529983 41 AGCCTTGGAATGCGAGGAGACAGAAGACAGTAGCCAAACAC AGCCTTGGAATGCGAGGAGACAGACGACAGTAGCCAAACAC < 41bp 0.899746070713635 0.626881808430731 0.8661976 0.8098151 prediction 0.545728524565807 Functional Loss - ZNF727 ENSG00000257482 CDS Human other chr7:63529963 chr7:63529967 nonsynonymous SNV 0.039 0 25 hm5C_associated_SNPs_59325 0 0 0 0 2 ZNF727 chr7:63529892 3'AG 63529892 Downstream 76bp
chr7 63529967 63529967 1 + A C STAD 63529963 + 63529943 63529983 41 AGCCTTGGAATGCGAGGAGACAGAAGACAGTAGCCAAACAC AGCCTTGGAATGCGAGGAGACAGACGACAGTAGCCAAACAC < 41bp 0.899746070713635 0.626881808430731 0.8661976 0.8098151 prediction 0.545728524565807 Functional Loss - ZNF727 ENSG00000257482 CDS Human other chr7:63529963 chr7:63529967 nonsynonymous SNV 0.039 0 25 hm5C_associated_SNPs_59325 0 0 0 0 2 ZNF727 chr7:63529987 5'GT 63529987 Upstream 21bp
chr7 100189522 100189522 1 + G T COAD 100189519 + 100189499 100189539 41 GTTGTGTTGTGTCGTGGAGCCAAGGATGTGAGTAGCAGAAC GTTGTGTTGTGTCGTGGAGCCAATGATGTGAGTAGCAGAAC < 41bp 0.772854132992705 0.385525007182362 0.54764754 0.27310795 prediction 0.545708265985411 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100189519 chr7:100189522 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_59328 0 0 0 0 1 FBXO24 chr7:100189525 5'GT 100189525 Upstream 4bp
chr16 50828335 50828335 1 + G T LUSC 50828333 + 50828313 50828353 41 TCTTTGACAGCATGGCCGATCGGGATGGTACTGAAAACGCC TCTTTGACAGCATGGCCGATCGTGATGGTACTGAAAACGCC < 41bp 0.834713557555186 0.56185970627027 0.8902214 0.38278866 prediction 0.545707702569832 Functional Loss - CYLD ENSG00000083799 CDS Human protein_coding chr16:50828333 chr16:50828335 synonymous SNV . 0 23 hm5C_associated_SNPs_59329 0 0 1 0 1 CYLD chr16:50828339 5'GT 50828339 Upstream 5bp
chr17 4608583 4608583 1 + G T rs73973606 4608581 + 4608561 4608601 41 GCCTCCGCGCAACTCGGCAGCGGCAGGGAAAGAGAAGGAAT GCCTCCGCGCAACTCGGCAGCGTCAGGGAAAGAGAAGGAAT < 41bp 0.772852697730199 0.464709833733267 0.45825058 0.24449742 prediction 0.545705395460397 Functional Loss - LOC101559451 ENSG00000244184 ncRNA_exonic Human other chr17:4608581 chr17:4608583 . . 0 23 hm5C_associated_SNPs_59330 0 0 0 0 1 LOC101559451 chr17:4608494 3'AG 4608494 Downstream 90bp
chr7 91981884 91981884 1 + G T BLCA 91981881 + 91981861 91981901 41 GAAACAAGGGTCAAATACATCTGGATCTGATACACTCAGCT GAAACAAGGGTCAAATACATCTGTATCTGATACACTCAGCT < 41bp 0.772844715939091 0.399156484395691 0.18694526 0.2003291 prediction 0.545689431878181 Functional Loss - ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:91981881 chr7:91981884 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_59331 0 0 1 0 2 ANKIB1 chr7:91981790 3'AG 91981790 Downstream 95bp
chr7 91981884 91981884 1 + G T BLCA 91981881 + 91981861 91981901 41 GAAACAAGGGTCAAATACATCTGGATCTGATACACTCAGCT GAAACAAGGGTCAAATACATCTGTATCTGATACACTCAGCT < 41bp 0.772844715939091 0.399156484395691 0.18694526 0.2003291 prediction 0.545689431878181 Functional Loss - ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:91981881 chr7:91981884 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_59331 0 0 1 0 2 ANKIB1 chr7:91981956 5'GT 91981956 Upstream 73bp
chr7 21521652 21521652 1 + G T LUAD 21521649 + 21521629 21521669 41 AGCACATCTTCGCTGGCATACTGGAGAAAGACCTTTTATAT AGCACATCTTCGCTGGCATACTGTAGAAAGACCTTTTATAT < 41bp 0.772841965497037 0.412220345254171 0.27906048 0.043141007 prediction 0.545683930994074 Functional Loss - SP4 ENSG00000105866 CDS Human protein_coding chr7:21521649 chr7:21521652 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_59332 0 0 0 0 1 SP4 chr7:21521741 5'GT 21521741 Upstream 90bp
chr12 110451051 110451051 1 + C T UCS 110451049 + 110451029 110451069 41 CTGAGCTGCTCCAAAAAATTCTCGAGGTATCCATGAAAATG CTGAGCTGCTCCAAAAAATTCTTGAGGTATCCATGAAAATG < 41bp 0.783424472655503 0.510583830766872 0.2508099 0.27150062 prediction 0.545681283777262 Functional Loss - ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110451049 chr12:110451051 synonymous SNV . 0 23 hm5C_associated_SNPs_59333 0 0 1 0 1 ANKRD13A chr12:110451054 5'GT 110451054 Upstream 4bp
chr1 151502571 151502571 1 + G T LUAD 151502568 + 151502548 151502588 41 AAGCGGTGGAGGCACGACTACGGGACAAGCTGCAGCGGCTG AAGCGGTGGAGGCACGACTACGGTACAAGCTGCAGCGGCTG < 41bp 0.903967325606717 0.631131962142422 0.8788819 0.75384986 prediction 0.545670726928591 Functional Loss - CGN ENSG00000143375 CDS Human protein_coding chr1:151502568 chr1:151502571 nonsynonymous SNV 0.952 4 24 hm5C_associated_SNPs_59334 0 0 0 0 1 CGN chr1:151502591 5'GT 151502591 Upstream 21bp
chr19 55175000 55175000 1 + G T LUAD 55174998 + 55174978 55175018 41 ACTCTCTTCCAGGGCTGAGTCTGGGCCCCAGGACCCACATG ACTCTCTTCCAGGGCTGAGTCTTGGCCCCAGGACCCACATG < 41bp 0.877399604176406 0.604623517586798 0.8965388 0.610452 prediction 0.545552173179218 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55174998 chr19:55175000 synonymous SNV . 0 23 hm5C_associated_SNPs_59340 0 0 0 0 2 LILRB4 chr19:55174990 3'AG 55174990 Downstream 11bp
chr19 55175000 55175000 1 + G T LUAD 55174998 + 55174978 55175018 41 ACTCTCTTCCAGGGCTGAGTCTGGGCCCCAGGACCCACATG ACTCTCTTCCAGGGCTGAGTCTTGGCCCCAGGACCCACATG < 41bp 0.877399604176406 0.604623517586798 0.8965388 0.610452 prediction 0.545552173179218 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55174998 chr19:55175000 synonymous SNV . 0 23 hm5C_associated_SNPs_59340 0 0 0 0 2 LILRB4 chr19:55175025 5'GT 55175025 Upstream 26bp
chr7 66410044 66410044 1 + G C OV 66410043 + 66410023 66410063 41 ACCCTCAAGCATCTCACAAACGACACCACAACTCCGGAAAG ACCCTCAAGCATCTCACAAACCACACCACAACTCCGGAAAG < 41bp 0.824924598084654 0.552166679366482 0.056083202 0.020857245 prediction 0.545515837436344 Functional Loss - TMEM248 ENSG00000106609 CDS Human protein_coding chr7:66410043 chr7:66410044 nonsynonymous SNV 0.963 1 22 hm5C_associated_SNPs_59344 0 0 1 0 1 TMEM248 chr7:66409963 3'AG 66409963 Downstream 82bp
chr7 128317797 128317797 1 + C T rs201533178 128317795 + 128317775 128317815 41 CAGAAAGGCCTGTCCATCACCACCAAAGACCCGAGAATCAA CAGAAAGGCCTGTCCATCACCATCAAAGACCCGAGAATCAA < 41bp 0.788605737291341 0.515856295765704 0.10441393 0.07992986 prediction 0.545498883051275 Functional Loss - FAM71F2 ENSG00000205085 CDS Human protein_coding chr7:128317795 chr7:128317797 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_59345 0 0 0 1 1 FAM71F2 chr7:128317867 5'GT 128317867 Upstream 71bp
chr2 101185428 101185428 1 + G T LUSC 101185425 + 101185405 101185445 41 AAGATATGACTTTGGAAGAGCTGGAGGATCATGAAGACGAG AAGATATGACTTTGGAAGAGCTGTAGGATCATGAAGACGAG < 41bp 0.772744712710967 0.404906746940895 0.31027597 0.13969505 prediction 0.545489425421934 Functional Loss - PDCL3 ENSG00000115539 CDS Human protein_coding chr2:101185425 chr2:101185428 stopgain 0.997 1 24 hm5C_associated_SNPs_59346 0 0 1 0 2 PDCL3 chr2:101185393 3'AG 101185393 Downstream 36bp
chr2 101185428 101185428 1 + G T LUSC 101185425 + 101185405 101185445 41 AAGATATGACTTTGGAAGAGCTGGAGGATCATGAAGACGAG AAGATATGACTTTGGAAGAGCTGTAGGATCATGAAGACGAG < 41bp 0.772744712710967 0.404906746940895 0.31027597 0.13969505 prediction 0.545489425421934 Functional Loss - PDCL3 ENSG00000115539 CDS Human protein_coding chr2:101185425 chr2:101185428 stopgain 0.997 1 24 hm5C_associated_SNPs_59346 0 0 1 0 2 PDCL3 chr2:101185483 5'GT 101185483 Upstream 56bp
chr2 101185427 101185427 1 + G T LUSC 101185425 + 101185405 101185445 41 AAGATATGACTTTGGAAGAGCTGGAGGATCATGAAGACGAG AAGATATGACTTTGGAAGAGCTTGAGGATCATGAAGACGAG < 41bp 0.772744712710967 0.459297998993442 0.31027597 0.11294073 prediction 0.545489425421934 Functional Loss - PDCL3 ENSG00000115539 CDS Human protein_coding chr2:101185425 chr2:101185427 synonymous SNV . 0 23 hm5C_associated_SNPs_59347 0 0 1 0 2 PDCL3 chr2:101185393 3'AG 101185393 Downstream 35bp
chr2 101185427 101185427 1 + G T LUSC 101185425 + 101185405 101185445 41 AAGATATGACTTTGGAAGAGCTGGAGGATCATGAAGACGAG AAGATATGACTTTGGAAGAGCTTGAGGATCATGAAGACGAG < 41bp 0.772744712710967 0.459297998993442 0.31027597 0.11294073 prediction 0.545489425421934 Functional Loss - PDCL3 ENSG00000115539 CDS Human protein_coding chr2:101185425 chr2:101185427 synonymous SNV . 0 23 hm5C_associated_SNPs_59347 0 0 1 0 2 PDCL3 chr2:101185483 5'GT 101185483 Upstream 57bp
chr8 33357860 33357860 1 - G A HNSC 33357862 - 33357842 33357882 41 GATTCTCCTGGACCGCTGTTCTCAAGGACGGGTAAAGGTAA GATTCTCCTGGACCGCTGTTCTTAAGGACGGGTAAAGGTAA < 41bp 0.79624949710852 0.523511403778071 0.13123056 0.083619565 prediction 0.545476186660899 Functional Loss - TTI2 ENSG00000129696 CDS Human protein_coding chr8:33357862 chr8:33357860 stopgain 0.943 0 23 hm5C_associated_SNPs_59350 0 0 0 0 1 TTI2 chr8:33357846 5'GT 33357846 Upstream 15bp
chr12 50500638 50500638 1 + C T SKCM 50500636 + 50500616 50500656 41 CCTGAAAGAGCTGATGCAGACACCAAACTTCCGTATCACAG CCTGAAAGAGCTGATGCAGACATCAAACTTCCGTATCACAG < 41bp 0.772732467326307 0.488628974743355 0.19149378 0.21287754 prediction 0.545464934652614 Functional Loss - GPD1 ENSG00000167588 CDS Human protein_coding chr12:50500636 chr12:50500638 nonsynonymous SNV 0.991 0 23 hm5C_associated_SNPs_59352 0 0 0 0 2 GPD1 chr12:50500588 3'AG 50500588 Downstream 51bp
chr12 50500638 50500638 1 + C T SKCM 50500636 + 50500616 50500656 41 CCTGAAAGAGCTGATGCAGACACCAAACTTCCGTATCACAG CCTGAAAGAGCTGATGCAGACATCAAACTTCCGTATCACAG < 41bp 0.772732467326307 0.488628974743355 0.19149378 0.21287754 prediction 0.545464934652614 Functional Loss - GPD1 ENSG00000167588 CDS Human protein_coding chr12:50500636 chr12:50500638 nonsynonymous SNV 0.991 0 23 hm5C_associated_SNPs_59352 0 0 0 0 2 GPD1 chr12:50500700 5'GT 50500700 Upstream 63bp
chr14 90455387 90455387 1 + G T COAD 90455384 + 90455364 90455404 41 TTAAAGAGAGCATGCTGACACTGGGGAAGGAAAGCAAGACT TTAAAGAGAGCATGCTGACACTGTGGAAGGAAAGCAAGACT < 41bp 0.772718320431093 0.394887465172974 0.29814866 0.061280698 prediction 0.545436640862187 Functional Loss - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90455384 chr14:90455387 nonsynonymous SNV 0.568 1 24 hm5C_associated_SNPs_59354 0 0 1 1 1 TDP1 chr14:90455434 5'GT 90455434 Upstream 48bp
chr1 10473273 10473273 1 + C T SKCM 10473271 + 10473251 10473291 41 ACAGGGAAGTGGACCGCCATCTCCGCCCTGGAATACGGCGT ACAGGGAAGTGGACCGCCATCTTCGCCCTGGAATACGGCGT < 41bp 0.772715151225968 0.497206218219723 0.32409748 0.22795257 prediction 0.545430302451936 Functional Loss - PGD ENSG00000142657 CDS Human protein_coding chr1:10473271 chr1:10473273 nonsynonymous SNV 0.532 4 23 hm5C_associated_SNPs_59356 0 0 1 0 1 PGD chr1:10473308 5'GT 10473308 Upstream 36bp
chr21 47320984 47320984 1 + C T UCEC 47320982 + 47320962 47321002 41 ACCATCACAGGCCCCACAGACGCCATCTTCAAGGCCTTTGC ACCATCACAGGCCCCACAGACGTCATCTTCAAGGCCTTTGC < 41bp 0.772703493639652 0.49578051060668 0.071041584 0.044246227 prediction 0.545406987279303 Functional Loss - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47320982 chr21:47320984 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_59357 0 0 0 0 1 PCBP3 chr21:47321027 5'GT 47321027 Upstream 44bp
chr2 3729244 3729244 1 + G T UCEC 3729242 + 3729222 3729262 41 AGATAAACTACCAGAAATCCCAGAAAGAGGAACCAGGACAG AGATAAACTACCAGAAATCCCATAAAGAGGAACCAGGACAG < 41bp 0.772700033719061 0.448978207848496 0.21903014 0.11414912 prediction 0.545400067438122 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3729242 chr2:3729244 stopgain 0.002 0 23 hm5C_associated_SNPs_59358 0 0 0 0 2 ALLC chr2:3729224 3'AG 3729224 Downstream 21bp
chr2 3729244 3729244 1 + G T UCEC 3729242 + 3729222 3729262 41 AGATAAACTACCAGAAATCCCAGAAAGAGGAACCAGGACAG AGATAAACTACCAGAAATCCCATAAAGAGGAACCAGGACAG < 41bp 0.772700033719061 0.448978207848496 0.21903014 0.11414912 prediction 0.545400067438122 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3729242 chr2:3729244 stopgain 0.002 0 23 hm5C_associated_SNPs_59358 0 0 0 0 2 ALLC chr2:3729303 5'GT 3729303 Upstream 60bp
chr19 46201945 46201945 1 + G T UCEC 46201942 + 46201922 46201962 41 CCTCACAGCCCCGGCCCCACCAGGATCCAGGCTATTGTAAG CCTCACAGCCCCGGCCCCACCAGTATCCAGGCTATTGTAAG < 41bp 0.905948801962621 0.633251587926052 0.46353716 0.1327348 prediction 0.545394428073138 Functional Loss - QPCTL ENSG00000011478 CDS Human protein_coding chr19:46201942 chr19:46201945 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_59360 0 0 1 0 1 QPCTL chr19:46201957 5'GT 46201957 Upstream 13bp
chr1 44442888 44442888 1 + G T STAD 44442886 + 44442866 44442906 41 GGGTCATCGTCGCAATTCTTCAGGTGATGAATCCCCTTGGG GGGTCATCGTCGCAATTCTTCATGTGATGAATCCCCTTGGG < 41bp 0.871579769953979 0.598891380584461 0.9095219 0.5227533 prediction 0.545376778739035 Functional Loss - ATP6V0B ENSG00000117410 CDS Human protein_coding chr1:44442886 chr1:44442888 nonsynonymous SNV 0.975 4 23 hm5C_associated_SNPs_59362 0 0 1 0 1 ATP6V0B chr1:44442888 5'GT 44442888 Upstream 1bp
chr8 11420545 11420545 1 + C T UCEC 11420543 + 11420523 11420563 41 GCCATCCACTTCGGGGTCTTCACCATCAAAGCAGACGTGTG GCCATCCACTTCGGGGTCTTCATCATCAAAGCAGACGTGTG < 41bp 0.772686876936685 0.49453999526812 0.37149173 0.059803396 prediction 0.545373753873371 Functional Loss - BLK ENSG00000136573 CDS Human protein_coding chr8:11420543 chr8:11420545 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_59363 0 0 0 0 2 BLK chr8:11420488 3'AG 11420488 Downstream 58bp
chr8 11420545 11420545 1 + C T UCEC 11420543 + 11420523 11420563 41 GCCATCCACTTCGGGGTCTTCACCATCAAAGCAGACGTGTG GCCATCCACTTCGGGGTCTTCATCATCAAAGCAGACGTGTG < 41bp 0.772686876936685 0.49453999526812 0.37149173 0.059803396 prediction 0.545373753873371 Functional Loss - BLK ENSG00000136573 CDS Human protein_coding chr8:11420543 chr8:11420545 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_59363 0 0 0 0 2 BLK chr8:11420619 5'GT 11420619 Upstream 75bp
chr1 99767365 99767365 1 + G T LUAD 99767363 + 99767343 99767383 41 TTTATCATCTGTGGAATAATCTGCGGGCTAACACGGATAAC TTTATCATCTGTGGAATAATCTTCGGGCTAACACGGATAAC < 41bp 0.772678338937886 0.450215637078345 0.6651939 0.18071851 prediction 0.545356677875772 Functional Loss - PLPPR4 ENSG00000117600 CDS Human protein_coding chr1:99767363 chr1:99767365 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_59365 0 0 0 0 2 PLPPR4 chr1:99767280 3'AG 99767280 Downstream 86bp
chr1 99767365 99767365 1 + G T LUAD 99767363 + 99767343 99767383 41 TTTATCATCTGTGGAATAATCTGCGGGCTAACACGGATAAC TTTATCATCTGTGGAATAATCTTCGGGCTAACACGGATAAC < 41bp 0.772678338937886 0.450215637078345 0.6651939 0.18071851 prediction 0.545356677875772 Functional Loss - PLPPR4 ENSG00000117600 CDS Human protein_coding chr1:99767363 chr1:99767365 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_59365 0 0 0 0 2 PLPPR4 chr1:99767453 5'GT 99767453 Upstream 89bp
chr6 4130794 4130794 1 - C A PRAD 4130797 - 4130777 4130817 41 GTTGTTTGTCATCGTCCGTTCAGGAAGCTGCCAGGCAGAAC GTTGTTTGTCATCGTCCGTTCAGTAAGCTGCCAGGCAGAAC < 41bp 0.835596815293394 0.562922529682217 0.6099291 0.19963336 prediction 0.545348571222352 Functional Loss - ECI2 ENSG00000198721 CDS Human protein_coding chr6:4130797 chr6:4130794 stopgain 0.987 0 24 hm5C_associated_SNPs_59367 0 0 0 0 2 ECI2 chr6:4130794 3'AG 4130794 Downstream 1bp
chr6 4130794 4130794 1 - C A PRAD 4130797 - 4130777 4130817 41 GTTGTTTGTCATCGTCCGTTCAGGAAGCTGCCAGGCAGAAC GTTGTTTGTCATCGTCCGTTCAGTAAGCTGCCAGGCAGAAC < 41bp 0.835596815293394 0.562922529682217 0.6099291 0.19963336 prediction 0.545348571222352 Functional Loss - ECI2 ENSG00000198721 CDS Human protein_coding chr6:4130797 chr6:4130794 stopgain 0.987 0 24 hm5C_associated_SNPs_59367 0 0 0 0 2 C6orf201 chr6:4130876 3'AG 4130876 Downstream 83bp
chr12 72416245 72416245 1 + G T STAD 72416243 + 72416223 72416263 41 GCAACTGCGGGCATATGGAGCAGGACTCCTTTCCTCCATTG GCAACTGCGGGCATATGGAGCATGACTCCTTTCCTCCATTG < 41bp 0.869960098022129 0.597288332973672 0.8286249 0.08432755 prediction 0.545343530096913 Functional Loss - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72416243 chr12:72416245 stopgain 0.987 1 23 hm5C_associated_SNPs_59368 0 0 0 0 2 TPH2 chr12:72416179 3'AG 72416179 Downstream 67bp
chr12 72416245 72416245 1 + G T STAD 72416243 + 72416223 72416263 41 GCAACTGCGGGCATATGGAGCAGGACTCCTTTCCTCCATTG GCAACTGCGGGCATATGGAGCATGACTCCTTTCCTCCATTG < 41bp 0.869960098022129 0.597288332973672 0.8286249 0.08432755 prediction 0.545343530096913 Functional Loss - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72416243 chr12:72416245 stopgain 0.987 1 23 hm5C_associated_SNPs_59368 0 0 0 0 2 TPH2 chr12:72416274 5'GT 72416274 Upstream 30bp
chr17 21215510 21215510 1 + G T SARC 21215508 + 21215488 21215528 41 CCTGGGGGACCCCGTTCCAGCAGCTGAAGCAGGTGGTGGAG CCTGGGGGACCCCGTTCCAGCATCTGAAGCAGGTGGTGGAG < 41bp 0.77266236044666 0.429433784684467 0.9174341 0.40793306 prediction 0.545324720893319 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21215508 chr17:21215510 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_59370 0 0 1 0 2 MAP2K3 chr17:21215454 3'AG 21215454 Downstream 57bp
chr17 21215510 21215510 1 + G T SARC 21215508 + 21215488 21215528 41 CCTGGGGGACCCCGTTCCAGCAGCTGAAGCAGGTGGTGGAG CCTGGGGGACCCCGTTCCAGCATCTGAAGCAGGTGGTGGAG < 41bp 0.77266236044666 0.429433784684467 0.9174341 0.40793306 prediction 0.545324720893319 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21215508 chr17:21215510 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_59370 0 0 1 0 2 MAP2K3 chr17:21215593 5'GT 21215593 Upstream 84bp
chr1 241959637 241959637 1 + G T CESC 241959635 + 241959615 241959655 41 GGACTCTTCAGATGGCATTACAGGAAAGAAGAAGGGAGGTC GGACTCTTCAGATGGCATTACATGAAAGAAGAAGGGAGGTC < 41bp 0.7726350930979 0.446808429615294 0.31084377 0.24164763 prediction 0.545270186195801 Functional Loss - WDR64 ENSG00000162843 CDS Human protein_coding chr1:241959635 chr1:241959637 stopgain 0.002 0 23 hm5C_associated_SNPs_59372 0 0 0 0 1 WDR64 chr1:241959559 3'AG 241959559 Downstream 79bp
chr2 9614683 9614683 1 + G C rs376507579 9614682 + 9614662 9614702 41 CTGGCGGCCCCGCCCCGCCCCGCCCGGCTGCTCCATGGCGC CTGGCGGCCCCGCCCCGCCCCCCCCGGCTGCTCCATGGCGC < 41bp 0.772609302048874 0.497843333071031 0.0442259 0.014726162 prediction 0.545218604097748 Functional Loss - IAH1 ENSG00000134330 UTR5 Human protein_coding chr2:9614682 chr2:9614683 . . 0 22 hm5C_associated_SNPs_59373 0 0 1 0 1 IAH1 chr2:9614776 5'GT 9614776 Upstream 94bp
chr2 27322557 27322557 1 + G C CESC 27322553 + 27322533 27322573 41 GGAGGAGCGTGCAGGAAGCACTGAGATTCGGGTGCCAGGTG GGAGGAGCGTGCAGGAAGCACTGACATTCGGGTGCCAGGTG < 41bp 0.791681649561222 0.51908036480283 0.2884506 0.20622832 prediction 0.545202569516784 Functional Loss - KHK ENSG00000138030 CDS Human protein_coding chr2:27322553 chr2:27322557 nonsynonymous SNV 0.144 0 25 hm5C_associated_SNPs_59375 0 0 1 0 1 KHK chr2:27322533 3'AG 27322533 Downstream 25bp
chr15 59752198 59752198 1 + C T UCEC 59752196 + 59752176 59752216 41 CACCATACTCATCTGTAAGCCTCGTGGAGCAGCTGGAAGAC CACCATACTCATCTGTAAGCCTTGTGGAGCAGCTGGAAGAC < 41bp 0.795068298538557 0.522476270629973 0.10672587 0.104657054 prediction 0.545184055817169 Functional Loss - FAM81A ENSG00000157470 CDS Human protein_coding chr15:59752196 chr15:59752198 synonymous SNV . 0 23 hm5C_associated_SNPs_59376 0 0 0 0 1 FAM81A chr15:59752132 3'AG 59752132 Downstream 67bp
chr17 30520218 30520218 1 + A T UCEC 30520214 + 30520194 30520234 41 GAGGATGTCAAGAATGTAGTCAGAAAACATATAAGTGATGG GAGGATGTCAAGAATGTAGTCAGATAACATATAAGTGATGG < 41bp 0.772556105412735 0.471725283292247 0.26623964 0.35762137 prediction 0.54511221082547 Functional Loss - RHOT1 ENSG00000126858 CDS Human protein_coding chr17:30520214 chr17:30520218 stopgain 0.929 1 25 hm5C_associated_SNPs_59381 0 0 1 0 2 RHOT1 chr17:30520155 3'AG 30520155 Downstream 64bp
chr17 30520218 30520218 1 + A T UCEC 30520214 + 30520194 30520234 41 GAGGATGTCAAGAATGTAGTCAGAAAACATATAAGTGATGG GAGGATGTCAAGAATGTAGTCAGATAACATATAAGTGATGG < 41bp 0.772556105412735 0.471725283292247 0.26623964 0.35762137 prediction 0.54511221082547 Functional Loss - RHOT1 ENSG00000126858 CDS Human protein_coding chr17:30520214 chr17:30520218 stopgain 0.929 1 25 hm5C_associated_SNPs_59381 0 0 1 0 2 RHOT1 chr17:30520263 5'GT 30520263 Upstream 46bp
chr6 155569292 155569292 1 + G C LUAD 155569291 + 155569271 155569311 41 TCCCTGACGGACCAGGAGAGCGAGGAGCACTACCACCTGAC TCCCTGACGGACCAGGAGAGCCAGGAGCACTACCACCTGAC < 41bp 0.772531684852389 0.475445464720595 0.8994607 0.899969 prediction 0.545063369704778 Functional Loss - TIAM2 ENSG00000146426 CDS Human protein_coding chr6:155569291 chr6:155569292 nonsynonymous SNV 0.948 4 22 hm5C_associated_SNPs_59382 0 0 1 0 1 TIAM2 chr6:155569313 5'GT 155569313 Upstream 22bp
chr11 75480139 75480139 1 + G C CESC 75480138 + 75480118 75480158 41 GGAGGACCTGCGCTGTCGCGCGAGGGGTCTGGGAGATGGGG GGAGGACCTGCGCTGTCGCGCCAGGGGTCTGGGAGATGGGG < 41bp 0.772522839860865 0.475809979667148 0.9189191 0.89821786 prediction 0.545045679721731 Functional Loss - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75480138 chr11:75480139 nonsynonymous SNV 0.880 0 22 hm5C_associated_SNPs_59383 0 0 1 0 1 DGAT2 chr11:75480157 5'GT 75480157 Upstream 19bp
chr4 146651069 146651069 1 + G T UCEC 146651067 + 146651047 146651087 41 TGAGACCTAAAAAGCCAGCACAGGAGGCCCTGATAAACTAC TGAGACCTAAAAAGCCAGCACATGAGGCCCTGATAAACTAC < 41bp 0.859441096574021 0.586919227885234 0.63201416 0.33610708 prediction 0.545043737377574 Functional Loss - C4orf51 ENSG00000237136 CDS Human protein_coding chr4:146651067 chr4:146651069 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_59384 0 0 0 0 2 C4orf51 chr4:146651044 3'AG 146651044 Downstream 26bp
chr4 146651069 146651069 1 + G T UCEC 146651067 + 146651047 146651087 41 TGAGACCTAAAAAGCCAGCACAGGAGGCCCTGATAAACTAC TGAGACCTAAAAAGCCAGCACATGAGGCCCTGATAAACTAC < 41bp 0.859441096574021 0.586919227885234 0.63201416 0.33610708 prediction 0.545043737377574 Functional Loss - C4orf51 ENSG00000237136 CDS Human protein_coding chr4:146651067 chr4:146651069 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_59384 0 0 0 0 2 C4orf51 chr4:146651117 5'GT 146651117 Upstream 49bp
chr1 109103096 109103096 1 + G C LUAD 109103095 + 109103075 109103115 41 TTTAAGGTGGACTTCGAGCTCGAGGAGCTCTCCTCAGTGCC TTTAAGGTGGACTTCGAGCTCCAGGAGCTCTCCTCAGTGCC < 41bp 0.810088930787884 0.537568886368279 0.9242573 0.89688456 prediction 0.54504008883921 Functional Loss - FAM102B ENSG00000162636 CDS Human protein_coding chr1:109103095 chr1:109103096 nonsynonymous SNV 0.999 0 22 hm5C_associated_SNPs_59385 0 0 1 0 1 FAM102B chr1:109103187 5'GT 109103187 Upstream 92bp
chr1 231488418 231488418 1 + G T UCEC 231488415 + 231488395 231488435 41 TTAGTGGGAAAGGATATGTTCTAGGAGAAACAAGCAATTTA TTAGTGGGAAAGGATATGTTCTATGAGAAACAAGCAATTTA < 41bp 0.772516143111208 0.408529534108363 0.13831097 0.07114205 prediction 0.545032286222415 Functional Loss - SPRTN ENSG00000010072 CDS Human protein_coding chr1:231488415 chr1:231488418 stopgain 0.919 1 24 hm5C_associated_SNPs_59386 0 0 1 0 1 SPRTN chr1:231488356 3'AG 231488356 Downstream 63bp
chr12 113722554 113722554 1 + G T UCEC 113722551 + 113722531 113722571 41 TTCTTCTCCAAGCACGTGCCCTGGAGTTACCTCGTCTTTCT TTCTTCTCCAAGCACGTGCCCTGTAGTTACCTCGTCTTTCT < 41bp 0.772514486777522 0.380344552169943 0.56104136 0.18460941 prediction 0.545028973555043 Functional Loss - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113722551 chr12:113722554 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_59387 0 0 1 0 2 TPCN1 chr12:113722523 3'AG 113722523 Downstream 32bp
chr12 113722554 113722554 1 + G T UCEC 113722551 + 113722531 113722571 41 TTCTTCTCCAAGCACGTGCCCTGGAGTTACCTCGTCTTTCT TTCTTCTCCAAGCACGTGCCCTGTAGTTACCTCGTCTTTCT < 41bp 0.772514486777522 0.380344552169943 0.56104136 0.18460941 prediction 0.545028973555043 Functional Loss - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113722551 chr12:113722554 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_59387 0 0 1 0 2 TPCN1 chr12:113722576 5'GT 113722576 Upstream 23bp
chr9 74764518 74764518 1 + G T UCEC 74764515 + 74764495 74764535 41 CGCCCCTGGCGCACATCTTCCGAGGGACGTTCGTCCACTCC CGCCCCTGGCGCACATCTTCCGATGGACGTTCGTCCACTCC < 41bp 0.863898287705752 0.591394303768617 0.9190364 0.6840909 prediction 0.54500796787427 Functional Loss - GDA ENSG00000119125 CDS Human protein_coding chr9:74764515 chr9:74764518 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_59390 0 0 0 0 1 GDA chr9:74764598 5'GT 74764598 Upstream 81bp
chr1 156626837 156626837 1 + G C OV 156626836 + 156626816 156626856 41 GAGACCCAGTGCCGGATGTACGGCGCGCATCTGGCCAGCAT GAGACCCAGTGCCGGATGTACCGCGCGCATCTGGCCAGCAT < 41bp 0.772496564564376 0.465368683396691 0.5600965 0.32856268 prediction 0.544993129128751 Functional Loss - BCAN ENSG00000132692 CDS Human protein_coding chr1:156626836 chr1:156626837 nonsynonymous SNV 0.970 4 22 hm5C_associated_SNPs_59394 0 0 0 0 1 BCAN chr1:156626888 5'GT 156626888 Upstream 52bp
chr1 17674503 17674503 1 + G T UCEC 17674500 + 17674480 17674520 41 GCCCGTGGTCTTCGACTCTCCAAGGAACAGAGGCCTGAAGG GCCCGTGGTCTTCGACTCTCCAATGAACAGAGGCCTGAAGG < 41bp 0.772490460465725 0.368516226905807 0.734672 0.060688347 prediction 0.54498092093145 Functional Loss - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17674500 chr1:17674503 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_59397 0 0 0 0 2 PADI4 chr1:17674436 3'AG 17674436 Downstream 68bp
chr1 17674503 17674503 1 + G T UCEC 17674500 + 17674480 17674520 41 GCCCGTGGTCTTCGACTCTCCAAGGAACAGAGGCCTGAAGG GCCCGTGGTCTTCGACTCTCCAATGAACAGAGGCCTGAAGG < 41bp 0.772490460465725 0.368516226905807 0.734672 0.060688347 prediction 0.54498092093145 Functional Loss - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17674500 chr1:17674503 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_59397 0 0 0 0 2 PADI4 chr1:17674543 5'GT 17674543 Upstream 41bp
chr9 95766312 95766312 1 + G C LUAD 95766308 + 95766288 95766328 41 CTGCACCAGGCTGACGGATGCGGGGATCCCTCCAGAAGTCA CTGCACCAGGCTGACGGATGCGGGCATCCCTCCAGAAGTCA < 41bp 0.772487086221749 0.475708440079255 0.9462239 0.908869 prediction 0.544974172443498 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95766308 chr9:95766312 synonymous SNV . 0 25 hm5C_associated_SNPs_59398 0 0 0 0 1 FGD3 chr9:95766283 3'AG 95766283 Downstream 30bp
chr10 114044372 114044372 1 + G T SARC 114044370 + 114044350 114044390 41 CCTATGGATGGGAAGTTCATCAGCTGGCCCTCGGAGGGCTG CCTATGGATGGGAAGTTCATCATCTGGCCCTCGGAGGGCTG < 41bp 0.772486461116929 0.425530394207237 0.73303163 0.18267033 prediction 0.544972922233858 Functional Loss - TECTB ENSG00000119913 CDS Human protein_coding chr10:114044370 chr10:114044372 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_59399 0 0 0 0 1 TECTB chr10:114044293 3'AG 114044293 Downstream 80bp
chr17 12493990 12493990 1 + G T CESC 12493988 + 12493968 12494008 41 GGTGAAATTCGGACATTTGTCTGGACGGAGTAGAACCAAGA GGTGAAATTCGGACATTTGTCTTGACGGAGTAGAACCAAGA < 41bp 0.820527464655408 0.548041172739026 0.1829147 0.06635955 prediction 0.544972583832764 Functional Loss - LINC00670 ENSG00000179136 ncRNA_exonic Human lincRNA chr17:12493988 chr17:12493990 . . 0 23 hm5C_associated_SNPs_59400 0 0 0 0 1 LINC00670 chr17:12494065 5'GT 12494065 Upstream 76bp
chr16 1383653 1383653 1 + G C rs540777982 1383652 + 1383632 1383672 41 CCCAGCAGTTGCTCAGTCGTCGGCGCGCGCGGCTGGGAGCG CCCAGCAGTTGCTCAGTCGTCCGCGCGCGCGGCTGGGAGCG < 41bp 0.796055441285075 0.523575759738873 0.8911979 0.4638511 prediction 0.544959363092404 Functional Loss - BAIAP3 ENSG00000007516 UTR5 Human protein_coding chr16:1383652 chr16:1383653 . . 0 22 hm5C_associated_SNPs_59402 0 0 0 0 1 BAIAP3 chr16:1383750 5'GT 1383750 Upstream 98bp
chrX 55117791 55117791 1 + G T OV 55117788 + 55117768 55117808 41 CTGACATGGAAGCTTTTCAACAGGAACTGGCTCTGCTTAAG CTGACATGGAAGCTTTTCAACAGTAACTGGCTCTGCTTAAG < 41bp 0.897492317857755 0.625023800957882 0.466751 0.14491037 prediction 0.544937033799745 Functional Loss - PAGE2 ENSG00000234068 CDS Human protein_coding chrX:55117788 chrX:55117791 stopgain 0.009 0 24 hm5C_associated_SNPs_59405 0 0 0 0 2 PAGE2 chrX:55117765 3'AG 55117765 Downstream 27bp
chrX 55117791 55117791 1 + G T OV 55117788 + 55117768 55117808 41 CTGACATGGAAGCTTTTCAACAGGAACTGGCTCTGCTTAAG CTGACATGGAAGCTTTTCAACAGTAACTGGCTCTGCTTAAG < 41bp 0.897492317857755 0.625023800957882 0.466751 0.14491037 prediction 0.544937033799745 Functional Loss - PAGE2 ENSG00000234068 CDS Human protein_coding chrX:55117788 chrX:55117791 stopgain 0.009 0 24 hm5C_associated_SNPs_59405 0 0 0 0 2 PAGE2 chrX:55117890 5'GT 55117890 Upstream 100bp
chr16 66998292 66998292 1 + G C SKCM 66998288 + 66998268 66998308 41 ATGAGCATGCACCTGGCAACCAGGGCTTCCTAGATGTGGTA ATGAGCATGCACCTGGCAACCAGGCCTTCCTAGATGTGGTA < 41bp 0.813869734024001 0.541420010099391 0.9030161 0.6499767 prediction 0.54489944784922 Functional Loss - CES3 ENSG00000172828 CDS Human protein_coding chr16:66998288 chr16:66998292 nonsynonymous SNV 0.143 2 25 hm5C_associated_SNPs_59407 0 0 0 0 1 CES3 chr16:66998260 3'AG 66998260 Downstream 33bp
chr7 101091051 101091051 1 + G T STAD 101091049 + 101091029 101091069 41 AGATGCTGCCCTGGCTTCACCGGGAGCAACTGTGATGAGGG AGATGCTGCCCTGGCTTCACCGTGAGCAACTGTGATGAGGG < 41bp 0.874281394429328 0.601849297920783 0.90633094 0.14855114 prediction 0.544864193017088 Functional Loss - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101091049 chr7:101091051 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_59411 0 0 0 0 2 COL26A1 chr7:101090965 3'AG 101090965 Downstream 87bp
chr7 101091051 101091051 1 + G T STAD 101091049 + 101091029 101091069 41 AGATGCTGCCCTGGCTTCACCGGGAGCAACTGTGATGAGGG AGATGCTGCCCTGGCTTCACCGTGAGCAACTGTGATGAGGG < 41bp 0.874281394429328 0.601849297920783 0.90633094 0.14855114 prediction 0.544864193017088 Functional Loss - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101091049 chr7:101091051 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_59411 0 0 0 0 2 COL26A1 chr7:101090971 3'AG 101090971 Downstream 81bp
chr1 109260477 109260477 1 + G C rs141252453 109260473 + 109260453 109260493 41 CTGTAGAATGGGCTACAGTGCCGGGTGCCACCAGTTACCTC CTGTAGAATGGGCTACAGTGCCGGCTGCCACCAGTTACCTC < 41bp 0.792093158546506 0.519666097388181 0.7524145 0.32316256 prediction 0.54485412231665 Functional Loss - FNDC7 ENSG00000143107 CDS Human protein_coding chr1:109260473 chr1:109260477 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_59412 0 0 0 0 1 FNDC7 chr1:109260399 3'AG 109260399 Downstream 79bp
chr14 24624871 24624871 1 + C T LUAD 24624869 + 24624849 24624889 41 AGGCAACTTGTCCCCAGTGTCACCAGACCTTCTGTGTGCGC AGGCAACTTGTCCCCAGTGTCATCAGACCTTCTGTGTGCGC < 41bp 0.788697504028147 0.516272948176203 0.26085454 0.27264428 prediction 0.544849111703889 Functional Loss - RNF31 ENSG00000092098;ENSG00000259529 CDS Human other chr14:24624869 chr14:24624871 synonymous SNV . 0 23 hm5C_associated_SNPs_59413 0 0 1 0 1 RNF31 chr14:24624901 5'GT 24624901 Upstream 31bp
chr10 121207642 121207642 1 + C T rs77323445 121207640 + 121207620 121207660 41 GGCTCTCTGTTTCAGCTGCTCACGAAAGATGCGAAGCAGAG GGCTCTCTGTTTCAGCTGCTCATGAAAGATGCGAAGCAGAG < 41bp 0.775459724095651 0.503036254424627 0.18539414 0.15117937 prediction 0.544846939342049 Functional Loss - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121207640 chr10:121207642 nonsynonymous SNV 0.870 1 23 hm5C_associated_SNPs_59414 0 0 0 0 1 GRK5 chr10:121207635 3'AG 121207635 Downstream 8bp
chr4 39739088 39739088 1 + G T UCEC 39739086 + 39739066 39739106 41 TCTTGTAGATGAGAATTTTACAGAATTAAGAGGAGAAATAG TCTTGTAGATGAGAATTTTACATAATTAAGAGGAGAAATAG < 41bp 0.818333629401622 0.545917313833274 0.10824737 0.025185347 prediction 0.544832631136696 Functional Loss - UBE2K ENSG00000078140 CDS Human protein_coding chr4:39739086 chr4:39739088 stopgain 1.000 1 23 hm5C_associated_SNPs_59415 0 0 1 0 1 UBE2K chr4:39739040 3'AG 39739040 Downstream 49bp
chr8 39080726 39080726 1 + C T SKCM 39080724 + 39080704 39080744 41 ATGACGGAGACTGCCATGATCTCGATGCACGTTGTGAGAGT ATGACGGAGACTGCCATGATCTTGATGCACGTTGTGAGAGT < 41bp 0.772407098812362 0.493809883712701 0.8741867 0.16448587 prediction 0.544814197624724 Functional Loss - ADAM32 ENSG00000197140 CDS Human protein_coding chr8:39080724 chr8:39080726 synonymous SNV . 0 23 hm5C_associated_SNPs_59419 0 0 0 0 1 ADAM32 chr8:39080757 5'GT 39080757 Upstream 32bp
chr12 21661416 21661416 1 + G T UCEC 21661413 + 21661393 21661433 41 TGAAAGCTACAGGTTTTTTTCTGGGTGGTGTATTTGTAGTC TGAAAGCTACAGGTTTTTTTCTGTGTGGTGTATTTGTAGTC < 41bp 0.879591592817443 0.60718517229984 0.8746495 0.10219303 prediction 0.544812841035207 Functional Loss - GOLT1B ENSG00000111711 CDS Human protein_coding chr12:21661413 chr12:21661416 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_59420 0 0 1 1 2 GOLT1B chr12:21661317 3'AG 21661317 Downstream 100bp
chr12 21661416 21661416 1 + G T UCEC 21661413 + 21661393 21661433 41 TGAAAGCTACAGGTTTTTTTCTGGGTGGTGTATTTGTAGTC TGAAAGCTACAGGTTTTTTTCTGTGTGGTGTATTTGTAGTC < 41bp 0.879591592817443 0.60718517229984 0.8746495 0.10219303 prediction 0.544812841035207 Functional Loss - GOLT1B ENSG00000111711 CDS Human protein_coding chr12:21661413 chr12:21661416 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_59420 0 0 1 1 2 GOLT1B chr12:21661495 5'GT 21661495 Upstream 80bp
chr18 29102147 29102147 1 + C T GBM 29102145 + 29102125 29102165 41 ATCTCTGGAGCCTGCTTATCCTCCAGTGTTCTACCTAAATA ATCTCTGGAGCCTGCTTATCCTTCAGTGTTCTACCTAAATA < 41bp 0.794328739607378 0.52193168302336 0.934671 0.04353845 prediction 0.544794113168036 Functional Loss - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29102145 chr18:29102147 nonsynonymous SNV 0.028 0 23 hm5C_associated_SNPs_59421 0 0 1 0 1 DSG2 chr18:29102212 5'GT 29102212 Upstream 66bp
chr20 31022332 31022332 1 + G T LUSC 31022330 + 31022310 31022350 41 CCCACCACGGAGTCCTCCTGCCGGGGTTGGACTGGCGCCAG CCCACCACGGAGTCCTCCTGCCTGGGTTGGACTGGCGCCAG < 41bp 0.772362687786814 0.433200437611746 0.92459136 0.3438793 prediction 0.544725375573628 Functional Loss - ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31022330 chr20:31022332 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_59424 0 0 1 0 1 ASXL1 chr20:31022235 3'AG 31022235 Downstream 98bp
chr20 31022333 31022333 1 + G T LUSC 31022330 + 31022310 31022350 41 CCCACCACGGAGTCCTCCTGCCGGGGTTGGACTGGCGCCAG CCCACCACGGAGTCCTCCTGCCGTGGTTGGACTGGCGCCAG < 41bp 0.772362687786814 0.383057594768461 0.92459136 0.5566043 prediction 0.544725375573628 Functional Loss - ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31022330 chr20:31022333 synonymous SNV . 0 24 hm5C_associated_SNPs_59425 0 0 1 0 1 ASXL1 chr20:31022235 3'AG 31022235 Downstream 99bp
chr8 22020107 22020107 1 + G T UCEC 22020104 + 22020084 22020124 41 CAGGACTACTCCGCAGCTCCCCGGGGCCGATTTGGCATTCC CAGGACTACTCCGCAGCTCCCCGTGGCCGATTTGGCATTCC < 41bp 0.772355940728863 0.370621533479855 0.9337275 0.49289837 prediction 0.544711881457727 Functional Loss - SFTPC ENSG00000168484 CDS Human protein_coding chr8:22020104 chr8:22020107 synonymous SNV . 0 24 hm5C_associated_SNPs_59427 0 0 0 0 1 SFTPC chr8:22020087 3'AG 22020087 Downstream 21bp
chr7 133059665 133059665 1 + A T LUSC 133059661 + 133059641 133059681 41 ACTCTGTGGTCCTGGGATACCTGCAGGACACTGTAGTGACT ACTCTGTGGTCCTGGGATACCTGCTGGACACTGTAGTGACT < 41bp 0.806356273047352 0.534008521701114 0.2887563 0.096782684 prediction 0.544695502692477 Functional Loss - EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133059661 chr7:133059665 nonsynonymous SNV 0.878 2 25 hm5C_associated_SNPs_59429 0 0 1 0 2 EXOC4 chr7:133059582 3'AG 133059582 Downstream 84bp
chr7 133059665 133059665 1 + A T LUSC 133059661 + 133059641 133059681 41 ACTCTGTGGTCCTGGGATACCTGCAGGACACTGTAGTGACT ACTCTGTGGTCCTGGGATACCTGCTGGACACTGTAGTGACT < 41bp 0.806356273047352 0.534008521701114 0.2887563 0.096782684 prediction 0.544695502692477 Functional Loss - EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133059661 chr7:133059665 nonsynonymous SNV 0.878 2 25 hm5C_associated_SNPs_59429 0 0 1 0 2 EXOC4 chr7:133059756 5'GT 133059756 Upstream 92bp
chr14 31144232 31144232 1 + C T PAAD 31144230 + 31144210 31144250 41 AGAAAAAAAGACTTATTGATCTCCATACAAATGTTGCCACT AGAAAAAAAGACTTATTGATCTTCATACAAATGTTGCCACT < 41bp 0.77233866653828 0.486943042801716 0.94391376 0.64573294 prediction 0.54467733307656 Functional Loss - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31144230 chr14:31144232 synonymous SNV . 0 23 hm5C_associated_SNPs_59434 0 0 1 0 2 SCFD1 chr14:31144190 3'AG 31144190 Downstream 43bp
chr14 31144232 31144232 1 + C T PAAD 31144230 + 31144210 31144250 41 AGAAAAAAAGACTTATTGATCTCCATACAAATGTTGCCACT AGAAAAAAAGACTTATTGATCTTCATACAAATGTTGCCACT < 41bp 0.77233866653828 0.486943042801716 0.94391376 0.64573294 prediction 0.54467733307656 Functional Loss - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31144230 chr14:31144232 synonymous SNV . 0 23 hm5C_associated_SNPs_59434 0 0 1 0 2 SCFD1 chr14:31144271 5'GT 31144271 Upstream 40bp
chr19 56372827 56372827 1 + G T UCEC 56372825 + 56372805 56372845 41 GCGGGCACCTCAGAGAGCTCCAGGTGCAGGACAGCACCCTC GCGGGCACCTCAGAGAGCTCCATGTGCAGGACAGCACCCTC < 41bp 0.772324381219696 0.417730675804733 0.8244788 0.29382026 prediction 0.544648762439391 Functional Loss - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56372825 chr19:56372827 nonsynonymous SNV 0.000 3 23 hm5C_associated_SNPs_59435 0 0 0 0 2 NLRP4 chr19:56372752 3'AG 56372752 Downstream 76bp
chr19 56372827 56372827 1 + G T UCEC 56372825 + 56372805 56372845 41 GCGGGCACCTCAGAGAGCTCCAGGTGCAGGACAGCACCCTC GCGGGCACCTCAGAGAGCTCCATGTGCAGGACAGCACCCTC < 41bp 0.772324381219696 0.417730675804733 0.8244788 0.29382026 prediction 0.544648762439391 Functional Loss - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56372825 chr19:56372827 nonsynonymous SNV 0.000 3 23 hm5C_associated_SNPs_59435 0 0 0 0 2 NLRP4 chr19:56372913 5'GT 56372913 Upstream 87bp
chr10 99343409 99343409 1 + G C KIRC 99343405 + 99343385 99343425 41 ACGCCCTGGAGCATCCTGAGCCGGGGGCTGAGCATAACGGG ACGCCCTGGAGCATCCTGAGCCGGCGGCTGAGCATAACGGG < 41bp 0.800568597826891 0.528249790234228 0.9155544 0.8280934 prediction 0.544637615185327 Functional Loss - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99343405 chr10:99343409 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_59438 0 0 0 0 1 ANKRD2 chr10:99343333 3'AG 99343333 Downstream 77bp
chr7 100468075 100468075 1 + G T UCEC 100468072 + 100468052 100468092 41 GACATGAACCACCCGCCCAGCGGGGAGTACTTTGGTGAGCT GACATGAACCACCCGCCCAGCGGTGAGTACTTTGGTGAGCT < 41bp 0.77231260064447 0.375083257769993 0.8928311 0.30035648 prediction 0.54462520128894 Functional Loss - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100468072 chr7:100468075 synonymous SNV . 0 24 hm5C_associated_SNPs_59439 0 0 0 2 2 TRIP6 chr7:100467992 3'AG 100467992 Downstream 84bp
chr7 100468075 100468075 1 + G T UCEC 100468072 + 100468052 100468092 41 GACATGAACCACCCGCCCAGCGGGGAGTACTTTGGTGAGCT GACATGAACCACCCGCCCAGCGGTGAGTACTTTGGTGAGCT < 41bp 0.77231260064447 0.375083257769993 0.8928311 0.30035648 prediction 0.54462520128894 Functional Loss - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100468072 chr7:100468075 synonymous SNV . 0 24 hm5C_associated_SNPs_59439 0 0 0 2 2 TRIP6 chr7:100468085 5'GT 100468085 Upstream 11bp
chr12 9147879 9147879 1 + G T BLCA 9147876 + 9147856 9147896 41 TCCTTGTGATAACGGACAATCAGGAAATGGTAAATGCAAAC TCCTTGTGATAACGGACAATCAGTAAATGGTAAATGCAAAC < 41bp 0.886941020900448 0.614635311685501 0.8886312 0.26568538 prediction 0.544611418429894 Functional Loss - KLRG1 ENSG00000139187 CDS Human protein_coding chr12:9147876 chr12:9147879 stopgain 0.580 0 24 hm5C_associated_SNPs_59441 0 0 0 0 1 KLRG1 chr12:9147884 5'GT 9147884 Upstream 6bp
chr20 34596376 34596376 1 + G T UCEC 34596373 + 34596353 34596393 41 ACCTCAGGAGACACTCTCCCCAAGATGCTGGGCCCGAAGAT ACCTCAGGAGACACTCTCCCCAATATGCTGGGCCCGAAGAT < 41bp 0.772304332492319 0.386565697709581 0.12482807 0.026270837 prediction 0.544608664984638 Functional Loss - CNBD2 ENSG00000149646 CDS Human protein_coding chr20:34596373 chr20:34596376 nonsynonymous SNV 0.085 2 24 hm5C_associated_SNPs_59442 0 0 0 0 1 CNBD2 chr20:34596396 5'GT 34596396 Upstream 21bp
chr3 142403153 142403153 1 + C T COAD 142403151 + 142403131 142403171 41 AGGAGCTGATGAAGCTTTCTCCCGAGGAATTACTGCTGCGA AGGAGCTGATGAAGCTTTCTCCTGAGGAATTACTGCTGCGA < 41bp 0.794158238476811 0.521891523326302 0.5187281 0.37118012 prediction 0.544533430301017 Functional Loss - PLS1 ENSG00000120756 CDS Human protein_coding chr3:142403151 chr3:142403153 synonymous SNV . 0 23 hm5C_associated_SNPs_59445 0 0 1 0 2 PLS1 chr3:142403095 3'AG 142403095 Downstream 59bp
chr3 142403153 142403153 1 + C T COAD 142403151 + 142403131 142403171 41 AGGAGCTGATGAAGCTTTCTCCCGAGGAATTACTGCTGCGA AGGAGCTGATGAAGCTTTCTCCTGAGGAATTACTGCTGCGA < 41bp 0.794158238476811 0.521891523326302 0.5187281 0.37118012 prediction 0.544533430301017 Functional Loss - PLS1 ENSG00000120756 CDS Human protein_coding chr3:142403151 chr3:142403153 synonymous SNV . 0 23 hm5C_associated_SNPs_59445 0 0 1 0 2 PLS1 chr3:142403237 5'GT 142403237 Upstream 85bp
chr11 12245002 12245002 1 + C T STAD 12245000 + 12244980 12245020 41 AGGAGCTGGAGCACTACCCTCTCGAGAGACTGGGCTCGGTG AGGAGCTGGAGCACTACCCTCTTGAGAGACTGGGCTCGGTG < 41bp 0.804483090492704 0.532218919023386 0.9205688 0.19626659 prediction 0.544528342938636 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12245000 chr11:12245002 synonymous SNV . 0 23 hm5C_associated_SNPs_59446 0 0 1 0 1 MICAL2 chr11:12244958 3'AG 12244958 Downstream 45bp
chr19 44331594 44331594 1 + A C rs17712224 44331590 + 44331570 44331610 41 GTCCTTAAGGTTCTTGGACTCTGCATGGTGAGTTGGTCGTG GTCCTTAAGGTTCTTGGACTCTGCCTGGTGAGTTGGTCGTG < 41bp 0.772262285402343 0.431721358655263 0.2534245 0.13770783 prediction 0.544524570804687 Functional Loss - ZNF283 ENSG00000167637 UTR5 Human protein_coding chr19:44331590 chr19:44331594 . . 0 25 hm5C_associated_SNPs_59447 0 0 1 0 1 ZNF283 chr19:44331596 5'GT 44331596 Upstream 3bp
chr8 27373306 27373306 1 + G T BLCA 27373303 + 27373283 27373323 41 TGCCTCTGCCATGGATTTCCCGAGAGTTGGTATTCTTGGAG TGCCTCTGCCATGGATTTCCCGATAGTTGGTATTCTTGGAG < 41bp 0.905807661224594 0.633549310829297 0.930603 0.43460205 prediction 0.544516700790594 Functional Loss - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27373303 chr8:27373306 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_59449 0 0 0 0 2 EPHX2 chr8:27373235 3'AG 27373235 Downstream 72bp
chr8 27373306 27373306 1 + G T BLCA 27373303 + 27373283 27373323 41 TGCCTCTGCCATGGATTTCCCGAGAGTTGGTATTCTTGGAG TGCCTCTGCCATGGATTTCCCGATAGTTGGTATTCTTGGAG < 41bp 0.905807661224594 0.633549310829297 0.930603 0.43460205 prediction 0.544516700790594 Functional Loss - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27373303 chr8:27373306 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_59449 0 0 0 0 2 EPHX2 chr8:27373330 5'GT 27373330 Upstream 25bp
chr1 201291216 201291216 1 + G T UCEC 201291213 + 201291193 201291233 41 AACGCCCGCAACGCCTACACCGAGAAGTCCTCCACTGGCTG AACGCCCGCAACGCCTACACCGATAAGTCCTCCACTGGCTG < 41bp 0.772239404691325 0.37257494577798 0.43947145 0.014813632 prediction 0.544478809382649 Functional Loss - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201291213 chr1:201291216 nonsynonymous SNV 0.983 0 24 hm5C_associated_SNPs_59453 0 0 0 0 1 PKP1 chr1:201291261 5'GT 201291261 Upstream 46bp
chr17 42427687 42427687 1 + G T LUAD 42427684 + 42427664 42427704 41 TGTGTTATGGTCGATGGCTCCTGGGGGTGCTGCCCCATGCC TGTGTTATGGTCGATGGCTCCTGTGGGTGCTGCCCCATGCC < 41bp 0.911251523284437 0.639020875208896 0.9165306 0.43020707 prediction 0.544461296151082 Functional Loss - GRN ENSG00000030582 CDS Human protein_coding chr17:42427684 chr17:42427687 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_59458 0 0 1 0 2 GRN chr17:42427596 3'AG 42427596 Downstream 92bp
chr17 42427687 42427687 1 + G T LUAD 42427684 + 42427664 42427704 41 TGTGTTATGGTCGATGGCTCCTGGGGGTGCTGCCCCATGCC TGTGTTATGGTCGATGGCTCCTGTGGGTGCTGCCCCATGCC < 41bp 0.911251523284437 0.639020875208896 0.9165306 0.43020707 prediction 0.544461296151082 Functional Loss - GRN ENSG00000030582 CDS Human protein_coding chr17:42427684 chr17:42427687 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_59458 0 0 1 0 2 GRN chr17:42427708 5'GT 42427708 Upstream 22bp
chr15 40568155 40568155 1 + G T BLCA 40568152 + 40568132 40568172 41 CCCCAGTGCTGCGAGACTTCCTGGAGCGGATGCTGGTGCGG CCCCAGTGCTGCGAGACTTCCTGTAGCGGATGCTGGTGCGG < 41bp 0.902196598739176 0.629971433312094 0.7724043 0.19668272 prediction 0.544450330854162 Functional Loss - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40568152 chr15:40568155 stopgain 1.000 1 24 hm5C_associated_SNPs_59459 0 0 0 0 1 BUB1B-PAK6;PAK6 chr15:40568128 3'AG 40568128 Downstream 28bp
chr16 18602570 18602570 1 + G T LUAD 18602568 + 18602548 18602588 41 TGTTCCATTCTACCTTCCTCCTGGGGACCCTCAGCCTCGTC TGTTCCATTCTACCTTCCTCCTTGGGACCCTCAGCCTCGTC < 41bp 0.863220920915753 0.59100311628362 0.3546429 0.10169366 prediction 0.544435609264265 Functional Loss - ABCC6P1 ENSG00000256340 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:18602568 chr16:18602570 . . 0 23 hm5C_associated_SNPs_59460 0 0 0 0 1 ABCC6P1 chr16:18602629 5'GT 18602629 Upstream 60bp
chr17 56332227 56332227 1 + C T CESC 56332225 + 56332205 56332245 41 CCACATCCCACACCCTCTTTCTCCGCGAGCATAACCGGCTG CCACATCCCACACCCTCTTTCTTCGCGAGCATAACCGGCTG < 41bp 0.772205664667668 0.499915252897071 0.4477711 0.18556699 prediction 0.544411329335336 Functional Loss - LPO ENSG00000167419 CDS Human protein_coding chr17:56332225 chr17:56332227 synonymous SNV . 0 23 hm5C_associated_SNPs_59462 0 0 0 0 1 LPO chr17:56332172 3'AG 56332172 Downstream 56bp
chr2 27528685 27528685 1 + G T PAAD 27528682 + 27528662 27528702 41 CCACAAATGGCGCTGTATCTCCAGGTGGGCTCTAGGGGAGG CCACAAATGGCGCTGTATCTCCATGTGGGCTCTAGGGGAGG < 41bp 0.772200948107337 0.386866022714789 0.9414817 0.90705144 prediction 0.544401896214673 Functional Loss - TRIM54 ENSG00000138100 CDS Human protein_coding chr2:27528682 chr2:27528685 nonsynonymous SNV 0.955 2 24 hm5C_associated_SNPs_59464 0 0 0 0 1 TRIM54 chr2:27528685 5'GT 27528685 Upstream 1bp
chr2 98349367 98349367 1 + G T LUAD 98349365 + 98349345 98349385 41 GGCTGAGGCCGCGGAAGGAGCAGGGCACATACGCCCTGTCC GGCTGAGGCCGCGGAAGGAGCATGGCACATACGCCCTGTCC < 41bp 0.886437180321211 0.614243878136246 0.93617153 0.40288472 prediction 0.54438660436993 Functional Loss - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98349365 chr2:98349367 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_59466 0 0 0 0 1 ZAP70 chr2:98349346 3'AG 98349346 Downstream 22bp
chr11 118942398 118942398 1 + G T STAD 118942396 + 118942376 118942416 41 CAGCCCTAAGTGACCCTTCTCAGGACCTGCAGTTCATTGTG CAGCCCTAAGTGACCCTTCTCATGACCTGCAGTTCATTGTG < 41bp 0.879488638083426 0.60729967240569 0.94298327 0.546104 prediction 0.544377931355473 Functional Loss - VPS11 ENSG00000160695 CDS Human protein_coding chr11:118942396 chr11:118942398 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_59467 0 0 1 0 1 VPS11 chr11:118942306 3'AG 118942306 Downstream 93bp
chr2 223386549 223386549 1 + C T BLCA 223386547 + 223386527 223386567 41 GTGGCCCCGTCCCTCCTCCCCTCCAGTTGTAAAACTGGAAA GTGGCCCCGTCCCTCCTCCCCTTCAGTTGTAAAACTGGAAA < 41bp 0.813695360313787 0.541514907459249 0.91749936 0.06667933 prediction 0.544360905709075 Functional Loss - SGPP2 ENSG00000163082 CDS Human protein_coding chr2:223386547 chr2:223386549 nonsynonymous SNV 0.560 4 23 hm5C_associated_SNPs_59469 0 0 0 0 1 SGPP2 chr2:223386486 3'AG 223386486 Downstream 64bp
chr17 40462540 40462540 1 + C T rs2230135 40462538 + 40462518 40462558 41 TTACCAGCCCTGACCATGTACTCGATCAGGATGGAGAATTC TTACCAGCCCTGACCATGTACTTGATCAGGATGGAGAATTC < 41bp 0.772178891282892 0.495907935746107 0.21941975 0.047801763 prediction 0.544357782565784 Functional Loss - STAT5A ENSG00000126561 CDS Human protein_coding chr17:40462538 chr17:40462540 synonymous SNV . 0 23 hm5C_associated_SNPs_59470 0 0 1 0 1 STAT5A chr17:40462525 3'AG 40462525 Downstream 16bp
chr19 14024096 14024096 1 + G C HNSC 14024092 + 14024072 14024112 41 CTGGAGACAGCGCCAAGATGCGGCGCTACGATCGGGGGCTT CTGGAGACAGCGCCAAGATGCGGCCCTACGATCGGGGGCTT < 41bp 0.772171976780656 0.490213871501963 0.83709204 0.2510609 prediction 0.544343953561312 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14024092 chr19:14024096 nonsynonymous SNV 0.975 4 25 hm5C_associated_SNPs_59472 0 0 1 0 1 CC2D1A chr19:14024115 5'GT 14024115 Upstream 20bp
chr2 160050866 160050866 1 + C T rs114578876 160050864 + 160050844 160050884 41 GCGTCCAGTCTCACCTTGGCCACGAGGAAGTTGTCACTCTG GCGTCCAGTCTCACCTTGGCCATGAGGAAGTTGTCACTCTG < 41bp 0.786704632516843 0.514535804118354 0.23246977 0.248696 prediction 0.544337656796977 Functional Loss - TANC1 ENSG00000115183 CDS Human protein_coding chr2:160050864 chr2:160050866 synonymous SNV . 0 23 hm5C_associated_SNPs_59474 0 0 0 0 1 TANC1 chr2:160050768 3'AG 160050768 Downstream 99bp
chr19 55418134 55418134 1 + G C OV 55418130 + 55418110 55418150 41 TCGGGTTGGGGAGCTCTGGTCAGAGCCCAGCAACTTGCTGG TCGGGTTGGGGAGCTCTGGTCAGACCCCAGCAACTTGCTGG < 41bp 0.796490177740188 0.524330471097206 0.9071208 0.59269524 prediction 0.544319413285964 Functional Loss - NCR1 ENSG00000189430 CDS Human protein_coding chr19:55418130 chr19:55418134 nonsynonymous SNV 0.245 1 25 hm5C_associated_SNPs_59476 0 0 0 0 1 NCR1 chr19:55418165 5'GT 55418165 Upstream 32bp
chr20 36993330 36993330 1 + C T UCEC 36993328 + 36993308 36993348 41 AAAATGGTCTACTTTGCCATCTCGGATTATGTCTTCAACAC AAAATGGTCTACTTTGCCATCTTGGATTATGTCTTCAACAC < 41bp 0.772813962032582 0.500655584651017 0.15580195 0.14197156 prediction 0.544316754763129 Functional Loss - LBP ENSG00000129988 CDS Human protein_coding chr20:36993328 chr20:36993330 nonsynonymous SNV 0.009 4 23 hm5C_associated_SNPs_59477 0 0 0 0 1 LBP chr20:36993406 5'GT 36993406 Upstream 77bp
chr1 16355339 16355339 1 + G C SKCM 16355338 + 16355318 16355358 41 TGGGCCACTTCCTAGCTTCTCGGGTAAGGGGTCCTGAGCGG TGGGCCACTTCCTAGCTTCTCCGGTAAGGGGTCCTGAGCGG < 41bp 0.817936042986844 0.545782348058232 0.9122222 0.30516428 prediction 0.544307389857223 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16355338 chr1:16355339 nonsynonymous SNV 0.979 5 22 hm5C_associated_SNPs_59478 0 0 0 0 2 CLCNKA chr1:16355256 3'AG 16355256 Downstream 84bp
chr1 16355339 16355339 1 + G C SKCM 16355338 + 16355318 16355358 41 TGGGCCACTTCCTAGCTTCTCGGGTAAGGGGTCCTGAGCGG TGGGCCACTTCCTAGCTTCTCCGGTAAGGGGTCCTGAGCGG < 41bp 0.817936042986844 0.545782348058232 0.9122222 0.30516428 prediction 0.544307389857223 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16355338 chr1:16355339 nonsynonymous SNV 0.979 5 22 hm5C_associated_SNPs_59478 0 0 0 0 2 CLCNKA chr1:16355340 5'GT 16355340 Upstream 2bp
chr3 35780863 35780863 1 + G C LUSC 35780859 + 35780839 35780879 41 ATGACCCTGAGCCGGCAGTCCTCGGGGGAGACTCCTGAACC ATGACCCTGAGCCGGCAGTCCTCGCGGGAGACTCCTGAACC < 41bp 0.789003263401131 0.516858903975271 0.6790863 0.37359062 prediction 0.544288718851721 Functional Loss - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35780859 chr3:35780863 nonsynonymous SNV 0.950 4 25 hm5C_associated_SNPs_59479 0 0 0 0 1 ARPP21 chr3:35780809 3'AG 35780809 Downstream 55bp
chr1 151196730 151196730 1 + G T LUSC 151196727 + 151196707 151196747 41 TTTTTCCCCCCTAGCAGCATCTGGAATCAAGAGACCCATGG TTTTTCCCCCCTAGCAGCATCTGTAATCAAGAGACCCATGG < 41bp 0.772132845804477 0.40127938676451 0.086084485 0.027790487 prediction 0.544265691608954 Functional Loss - PIP5K1A ENSG00000143398 CDS Human protein_coding chr1:151196727 chr1:151196730 nonsynonymous SNV 0.709 1 24 hm5C_associated_SNPs_59480 0 0 1 0 3 PIP5K1A chr1:151196721 3'AG 151196721 Downstream 10bp
chr1 151196730 151196730 1 + G T LUSC 151196727 + 151196707 151196747 41 TTTTTCCCCCCTAGCAGCATCTGGAATCAAGAGACCCATGG TTTTTCCCCCCTAGCAGCATCTGTAATCAAGAGACCCATGG < 41bp 0.772132845804477 0.40127938676451 0.086084485 0.027790487 prediction 0.544265691608954 Functional Loss - PIP5K1A ENSG00000143398 CDS Human protein_coding chr1:151196727 chr1:151196730 nonsynonymous SNV 0.709 1 24 hm5C_associated_SNPs_59480 0 0 1 0 3 PIP5K1A chr1:151196724 3'AG 151196724 Downstream 7bp
chr1 151196730 151196730 1 + G T LUSC 151196727 + 151196707 151196747 41 TTTTTCCCCCCTAGCAGCATCTGGAATCAAGAGACCCATGG TTTTTCCCCCCTAGCAGCATCTGTAATCAAGAGACCCATGG < 41bp 0.772132845804477 0.40127938676451 0.086084485 0.027790487 prediction 0.544265691608954 Functional Loss - PIP5K1A ENSG00000143398 CDS Human protein_coding chr1:151196727 chr1:151196730 nonsynonymous SNV 0.709 1 24 hm5C_associated_SNPs_59480 0 0 1 0 3 PIP5K1A chr1:151196755 5'GT 151196755 Upstream 26bp
chr1 149376906 149376906 1 + G T UCEC 149376904 + 149376884 149376924 41 ATACTGGTGCGAGGCTGCCACAGAGGATGGAAATGTCCTTA ATACTGGTGCGAGGCTGCCACATAGGATGGAAATGTCCTTA < 41bp 0.772131732730914 0.453076171466643 0.8188193 0.644315 prediction 0.544263465461828 Functional Loss - FCGR1CP ENSG00000253193 ncRNA_exonic Human other chr1:149376904 chr1:149376906 . . 0 23 hm5C_associated_SNPs_59481 0 0 0 1 1 FCGR1CP chr1:149376957 5'GT 149376957 Upstream 52bp
chr20 62505056 62505056 1 + G T LUSC 62505054 + 62505034 62505074 41 TTGTCACTCTGCGCCAGGTCCTGGCAGCCAAGGAGAGGCAC TTGTCACTCTGCGCCAGGTCCTTGCAGCCAAGGAGAGGCAC < 41bp 0.772126115422824 0.446984118271097 0.3523919 0.07134578 prediction 0.544252230845648 Functional Loss - TPD52L2 ENSG00000101150 CDS Human protein_coding chr20:62505054 chr20:62505056 synonymous SNV . 0 23 hm5C_associated_SNPs_59482 0 0 1 0 1 TPD52L2 chr20:62505021 3'AG 62505021 Downstream 36bp
chr19 34869895 34869895 1 + C T SKCM 34869893 + 34869873 34869913 41 AGACGGCGAAGGAGTGGTTTCTCCAGGCGGCCAAGGATGTG AGACGGCGAAGGAGTGGTTTCTTCAGGCGGCCAAGGATGTG < 41bp 0.807157520456088 0.535061569734413 0.95544195 0.26496282 prediction 0.544191901443351 Functional Loss - GPI ENSG00000105220 CDS Human protein_coding chr19:34869893 chr19:34869895 synonymous SNV . 0 23 hm5C_associated_SNPs_59484 0 0 1 0 2 GPI chr19:34869839 3'AG 34869839 Downstream 57bp
chr19 34869895 34869895 1 + C T SKCM 34869893 + 34869873 34869913 41 AGACGGCGAAGGAGTGGTTTCTCCAGGCGGCCAAGGATGTG AGACGGCGAAGGAGTGGTTTCTTCAGGCGGCCAAGGATGTG < 41bp 0.807157520456088 0.535061569734413 0.95544195 0.26496282 prediction 0.544191901443351 Functional Loss - GPI ENSG00000105220 CDS Human protein_coding chr19:34869893 chr19:34869895 synonymous SNV . 0 23 hm5C_associated_SNPs_59484 0 0 1 0 2 GPI chr19:34869910 5'GT 34869910 Upstream 16bp
chr12 58017821 58017821 1 + C T UCEC 58017819 + 58017799 58017839 41 GCATCAACATCTCCAGCATGCGCCAGGTGTTCTGCCAGATG GCATCAACATCTCCAGCATGCGTCAGGTGTTCTGCCAGATG < 41bp 0.778796290560647 0.506720859309004 0.11673373 0.17573062 prediction 0.544150862503287 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58017819 chr12:58017821 synonymous SNV . 0 23 hm5C_associated_SNPs_59485 0 0 0 0 2 SLC26A10 chr12:58017786 3'AG 58017786 Downstream 36bp
chr12 58017821 58017821 1 + C T UCEC 58017819 + 58017799 58017839 41 GCATCAACATCTCCAGCATGCGCCAGGTGTTCTGCCAGATG GCATCAACATCTCCAGCATGCGTCAGGTGTTCTGCCAGATG < 41bp 0.778796290560647 0.506720859309004 0.11673373 0.17573062 prediction 0.544150862503287 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58017819 chr12:58017821 synonymous SNV . 0 23 hm5C_associated_SNPs_59485 0 0 0 0 2 SLC26A10 chr12:58017881 5'GT 58017881 Upstream 61bp
chr13 32348793 32348793 1 + G T LGG 32348790 + 32348770 32348810 41 AATTGCATTAGACACATATCCAGGAAAGCATTTTTTGGATT AATTGCATTAGACACATATCCAGTAAAGCATTTTTTGGATT < 41bp 0.772058954118087 0.413267267292684 0.80774724 0.09884283 prediction 0.544117908236174 Functional Loss - RXFP2 ENSG00000133105 CDS Human protein_coding chr13:32348790 chr13:32348793 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_59488 0 0 0 0 2 RXFP2 chr13:32348757 3'AG 32348757 Downstream 37bp
chr13 32348793 32348793 1 + G T LGG 32348790 + 32348770 32348810 41 AATTGCATTAGACACATATCCAGGAAAGCATTTTTTGGATT AATTGCATTAGACACATATCCAGTAAAGCATTTTTTGGATT < 41bp 0.772058954118087 0.413267267292684 0.80774724 0.09884283 prediction 0.544117908236174 Functional Loss - RXFP2 ENSG00000133105 CDS Human protein_coding chr13:32348790 chr13:32348793 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_59488 0 0 0 0 2 RXFP2 chr13:32348828 5'GT 32348828 Upstream 36bp
chr13 26828866 26828866 1 + G T BLCA 26828863 + 26828843 26828883 41 ACGAGGGCTGCAAAGTTGGCCGAGGCACTTATGGTCACGTC ACGAGGGCTGCAAAGTTGGCCGATGCACTTATGGTCACGTC < 41bp 0.772042928026519 0.397038540032743 0.39154115 0.08691138 prediction 0.544085856053038 Functional Loss - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26828863 chr13:26828866 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_59493 0 0 1 0 1 CDK8 chr13:26828906 5'GT 26828906 Upstream 41bp
chr20 31811740 31811740 1 + G T COAD 31811738 + 31811718 31811758 41 GTGGGCTGGCTAATCAGCGGCAGGAAACACCAGCAGCAGCA GTGGGCTGGCTAATCAGCGGCATGAAACACCAGCAGCAGCA < 41bp 0.873694087224301 0.601655335726507 0.89664245 0.40219322 prediction 0.544077502995588 Functional Loss - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31811738 chr20:31811740 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_59494 0 0 0 0 1 BPIFA3 chr20:31811767 5'GT 31811767 Upstream 28bp
chr5 118407331 118407331 1 + A C SKCM 118407327 + 118407307 118407347 41 GACCACTGCTTCTCCGTGGGCAGCATTGGCGACCAGCGCTT GACCACTGCTTCTCCGTGGGCAGCCTTGGCGACCAGCGCTT < 41bp 0.771987207870944 0.412716011398728 0.09798792 0.10512656 prediction 0.543974415741887 Functional Loss - DMXL1 ENSG00000172869 CDS Human protein_coding chr5:118407327 chr5:118407331 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_59498 0 0 1 0 2 DMXL1 chr5:118407250 3'AG 118407250 Downstream 82bp
chr5 118407331 118407331 1 + A C SKCM 118407327 + 118407307 118407347 41 GACCACTGCTTCTCCGTGGGCAGCATTGGCGACCAGCGCTT GACCACTGCTTCTCCGTGGGCAGCCTTGGCGACCAGCGCTT < 41bp 0.771987207870944 0.412716011398728 0.09798792 0.10512656 prediction 0.543974415741887 Functional Loss - DMXL1 ENSG00000172869 CDS Human protein_coding chr5:118407327 chr5:118407331 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_59498 0 0 1 0 2 DMXL1 chr5:118407351 5'GT 118407351 Upstream 21bp
chr11 55655737 55655737 1 + A T COAD 55655733 + 55655713 55655753 41 ATAAAGCAGATGTGGAGCTACTCCAGGTATGGACTGACCAT ATAAAGCAGATGTGGAGCTACTCCTGGTATGGACTGACCAT < 41bp 0.771967830340481 0.445141153227185 0.93576455 0.038490415 prediction 0.543935660680962 Functional Loss - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55655733 chr11:55655737 nonsynonymous SNV 0.011 1 25 hm5C_associated_SNPs_59499 0 0 0 0 1 TRIM51 chr11:55655738 5'GT 55655738 Upstream 2bp
chr8 24261565 24261565 1 + G T ESCA 24261562 + 24261542 24261582 41 CCTAACGTGTAAACTGAAGCCTGGAACTGATTGCGGAGGAG CCTAACGTGTAAACTGAAGCCTGTAACTGATTGCGGAGGAG < 41bp 0.89647177803066 0.624522315375035 0.42031854 0.32157132 prediction 0.543898925311252 Functional Loss - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24261562 chr8:24261565 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_59500 0 0 0 0 2 ADAMDEC1 chr8:24261516 3'AG 24261516 Downstream 50bp
chr8 24261565 24261565 1 + G T ESCA 24261562 + 24261542 24261582 41 CCTAACGTGTAAACTGAAGCCTGGAACTGATTGCGGAGGAG CCTAACGTGTAAACTGAAGCCTGTAACTGATTGCGGAGGAG < 41bp 0.89647177803066 0.624522315375035 0.42031854 0.32157132 prediction 0.543898925311252 Functional Loss - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24261562 chr8:24261565 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_59500 0 0 0 0 2 ADAMDEC1 chr8:24261601 5'GT 24261601 Upstream 37bp
chr22 25264356 25264356 1 + G T UCEC 25264353 + 25264333 25264373 41 GTGGCGGCAGTTGACAGCGGCGGGACAGTGGTATTGGTCAG GTGGCGGCAGTTGACAGCGGCGGTACAGTGGTATTGGTCAG < 41bp 0.771946590431456 0.383696554595771 0.8788721 0.7996021 prediction 0.543893180862913 Functional Loss - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25264353 chr22:25264356 synonymous SNV . 0 24 hm5C_associated_SNPs_59501 0 0 0 0 1 SGSM1 chr22:25264343 3'AG 25264343 Downstream 14bp
chr20 19977394 19977394 1 + C T UCEC 19977392 + 19977372 19977412 41 TTTCCAAGAAGAACAAGCAGCGCGACTGCTCAGCTCAGAAA TTTCCAAGAAGAACAAGCAGCGTGACTGCTCAGCTCAGAAA < 41bp 0.789667475875443 0.517725027713305 0.34957165 0.34012645 prediction 0.543884896324276 Functional Loss - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19977392 chr20:19977394 stopgain 0.032 0 23 hm5C_associated_SNPs_59502 0 0 0 0 2 RIN2 chr20:19977323 3'AG 19977323 Downstream 72bp
chr20 19977394 19977394 1 + C T UCEC 19977392 + 19977372 19977412 41 TTTCCAAGAAGAACAAGCAGCGCGACTGCTCAGCTCAGAAA TTTCCAAGAAGAACAAGCAGCGTGACTGCTCAGCTCAGAAA < 41bp 0.789667475875443 0.517725027713305 0.34957165 0.34012645 prediction 0.543884896324276 Functional Loss - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19977392 chr20:19977394 stopgain 0.032 0 23 hm5C_associated_SNPs_59502 0 0 0 0 2 RIN2 chr20:19977486 5'GT 19977486 Upstream 93bp
chrX 18748380 18748380 1 + C T HNSC 18748378 + 18748358 18748398 41 GCCAGACAACACTATGCCCTCACCATCTTCCAGTCCATCGA GCCAGACAACACTATGCCCTCATCATCTTCCAGTCCATCGA < 41bp 0.771941863788581 0.494608197213177 0.012726188 0.013575375 prediction 0.543883727577162 Functional Loss - PPEF1 ENSG00000086717 CDS Human protein_coding chrX:18748378 chrX:18748380 nonsynonymous SNV 0.428 1 23 hm5C_associated_SNPs_59503 0 0 0 0 2 PPEF1 chrX:18748299 3'AG 18748299 Downstream 82bp
chrX 18748380 18748380 1 + C T HNSC 18748378 + 18748358 18748398 41 GCCAGACAACACTATGCCCTCACCATCTTCCAGTCCATCGA GCCAGACAACACTATGCCCTCATCATCTTCCAGTCCATCGA < 41bp 0.771941863788581 0.494608197213177 0.012726188 0.013575375 prediction 0.543883727577162 Functional Loss - PPEF1 ENSG00000086717 CDS Human protein_coding chrX:18748378 chrX:18748380 nonsynonymous SNV 0.428 1 23 hm5C_associated_SNPs_59503 0 0 0 0 2 PPEF1 chrX:18748426 5'GT 18748426 Upstream 47bp
chr1 146766124 146766124 1 + C T UCEC 146766122 + 146766102 146766142 41 CTTCCACGTATTGGACATGCCACGAAAGGTTTTAACTGGTA CTTCCACGTATTGGACATGCCATGAAAGGTTTTAACTGGTA < 41bp 0.778944461155065 0.507002739782806 0.041867286 0.072003365 prediction 0.543883442744519 Functional Loss - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146766122 chr1:146766124 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_59504 0 0 1 0 2 CHD1L chr1:146766091 3'AG 146766091 Downstream 34bp
chr1 146766124 146766124 1 + C T UCEC 146766122 + 146766102 146766142 41 CTTCCACGTATTGGACATGCCACGAAAGGTTTTAACTGGTA CTTCCACGTATTGGACATGCCATGAAAGGTTTTAACTGGTA < 41bp 0.778944461155065 0.507002739782806 0.041867286 0.072003365 prediction 0.543883442744519 Functional Loss - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146766122 chr1:146766124 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_59504 0 0 1 0 2 CHD1L chr1:146766199 5'GT 146766199 Upstream 76bp
chr18 28923546 28923546 1 + G T UCEC 28923543 + 28923523 28923563 41 GAAGGACCACAGCCTGAACCCAGGGTAAGTGCCACATTCTA GAAGGACCACAGCCTGAACCCAGTGTAAGTGCCACATTCTA < 41bp 0.771939710959094 0.387202256365755 0.89354444 0.35510713 prediction 0.543879421918188 Functional Loss - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28923543 chr18:28923546 nonsynonymous SNV 0.025 0 24 hm5C_associated_SNPs_59506 0 0 0 0 1 DSG1 chr18:28923546 3'AG 28923546 Downstream 1bp
chr6 47541867 47541867 1 + A T UCEC 47541863 + 47541843 47541883 41 AAATGTGAGTGAAACTGCATCTGGATCAGTTACACAGCCAA AAATGTGAGTGAAACTGCATCTGGTTCAGTTACACAGCCAA < 41bp 0.771937170891085 0.459868205756622 0.3232885 0.2301453 prediction 0.543874341782171 Functional Loss - CD2AP ENSG00000198087 CDS Human protein_coding chr6:47541863 chr6:47541867 synonymous SNV . 0 25 hm5C_associated_SNPs_59507 0 0 1 0 1 CD2AP chr6:47541800 3'AG 47541800 Downstream 68bp
chrX 21627711 21627711 1 + G T LUSC 21627709 + 21627689 21627729 41 GGAGGAGGAGGAAGGGGAGGCAGCAGGGGAAAACATAGGAG GGAGGAGGAGGAAGGGGAGGCATCAGGGGAAAACATAGGAG < 41bp 0.771928580968594 0.453311872140334 0.893924 0.87985283 prediction 0.543857161937187 Functional Loss - CNKSR2 ENSG00000149970 CDS Human protein_coding chrX:21627709 chrX:21627711 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_59508 0 0 0 0 1 CNKSR2 chrX:21627735 5'GT 21627735 Upstream 25bp
chr12 130841562 130841562 1 + C T LUAD 130841560 + 130841540 130841580 41 TAACTGGCTGTTGATCTATACGCGAAGAAATTATGAAGCAG TAACTGGCTGTTGATCTATACGTGAAGAAATTATGAAGCAG < 41bp 0.772729795811105 0.50082575575802 0.13143674 0.09288031 prediction 0.543808080106169 Functional Loss - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130841560 chr12:130841562 stopgain 0.375 1 23 hm5C_associated_SNPs_59511 0 0 0 0 2 PIWIL1 chr12:130841463 3'AG 130841463 Downstream 100bp
chr12 130841562 130841562 1 + C T LUAD 130841560 + 130841540 130841580 41 TAACTGGCTGTTGATCTATACGCGAAGAAATTATGAAGCAG TAACTGGCTGTTGATCTATACGTGAAGAAATTATGAAGCAG < 41bp 0.772729795811105 0.50082575575802 0.13143674 0.09288031 prediction 0.543808080106169 Functional Loss - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130841560 chr12:130841562 stopgain 0.375 1 23 hm5C_associated_SNPs_59511 0 0 0 0 2 PIWIL1 chr12:130841650 5'GT 130841650 Upstream 89bp
chr15 91184414 91184414 1 + C T rs200743244 91184412 + 91184392 91184432 41 TATTCCAACTGCGGGAGTCTCCCGAACACCATCCTGCCAGG TATTCCAACTGCGGGAGTCTCCTGAACACCATCCTGCCAGG < 41bp 0.771903415933606 0.492072626849191 0.4279181 0.30495018 prediction 0.543806831867212 Functional Loss - CRTC3 ENSG00000140577 CDS Human protein_coding chr15:91184412 chr15:91184414 nonsynonymous SNV 0.006 4 23 hm5C_associated_SNPs_59512 0 0 1 0 2 CRTC3 chr15:91184329 3'AG 91184329 Downstream 86bp
chr15 91184414 91184414 1 + C T rs200743244 91184412 + 91184392 91184432 41 TATTCCAACTGCGGGAGTCTCCCGAACACCATCCTGCCAGG TATTCCAACTGCGGGAGTCTCCTGAACACCATCCTGCCAGG < 41bp 0.771903415933606 0.492072626849191 0.4279181 0.30495018 prediction 0.543806831867212 Functional Loss - CRTC3 ENSG00000140577 CDS Human protein_coding chr15:91184412 chr15:91184414 nonsynonymous SNV 0.006 4 23 hm5C_associated_SNPs_59512 0 0 1 0 2 CRTC3 chr15:91184431 5'GT 91184431 Upstream 18bp
chr1 153615741 153615741 1 + C T LUSC 153615739 + 153615719 153615759 41 AGGTGGACGAGCCGTAGCTCCCCGAATGGGCTTAAGAAGAG AGGTGGACGAGCCGTAGCTCCCTGAATGGGCTTAAGAAGAG < 41bp 0.774868194901109 0.502991660451612 0.055083454 0.029596955 prediction 0.543753068898994 Functional Loss - CHTOP ENSG00000160679 CDS Human protein_coding chr1:153615739 chr1:153615741 stopgain 1.000 1 23 hm5C_associated_SNPs_59513 0 0 1 0 2 CHTOP chr1:153615703 3'AG 153615703 Downstream 39bp
chr1 153615741 153615741 1 + C T LUSC 153615739 + 153615719 153615759 41 AGGTGGACGAGCCGTAGCTCCCCGAATGGGCTTAAGAAGAG AGGTGGACGAGCCGTAGCTCCCTGAATGGGCTTAAGAAGAG < 41bp 0.774868194901109 0.502991660451612 0.055083454 0.029596955 prediction 0.543753068898994 Functional Loss - CHTOP ENSG00000160679 CDS Human protein_coding chr1:153615739 chr1:153615741 stopgain 1.000 1 23 hm5C_associated_SNPs_59513 0 0 1 0 2 CHTOP chr1:153615840 5'GT 153615840 Upstream 100bp
chr17 65936603 65936603 1 + C T SKCM 65936601 + 65936581 65936621 41 ATCATCAGGGGGCAGCCTGTCTCCACTGCAGTCTCCGCCCC ATCATCAGGGGGCAGCCTGTCTTCACTGCAGTCTCCGCCCC < 41bp 0.781749450403465 0.509882321115536 0.939026 0.04878354 prediction 0.543734258575857 Functional Loss - BPTF ENSG00000171634 CDS Human protein_coding chr17:65936601 chr17:65936603 nonsynonymous SNV 0.674 3 23 hm5C_associated_SNPs_59515 0 0 1 0 1 BPTF chr17:65936555 3'AG 65936555 Downstream 49bp
chr3 10268066 10268066 1 + G T STAD 10268063 + 10268043 10268083 41 TGTTCTCTCCAGGTGTTGGCCGAGGTCCTCACGGGCATCCC TGTTCTCTCCAGGTGTTGGCCGATGTCCTCACGGGCATCCC < 41bp 0.771856529719357 0.366562522327123 0.88324344 0.36759737 prediction 0.543713059438714 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10268063 chr3:10268066 nonsynonymous SNV 0.958 3 24 hm5C_associated_SNPs_59518 0 0 1 0 2 IRAK2 chr3:10268055 3'AG 10268055 Downstream 12bp
chr3 10268066 10268066 1 + G T STAD 10268063 + 10268043 10268083 41 TGTTCTCTCCAGGTGTTGGCCGAGGTCCTCACGGGCATCCC TGTTCTCTCCAGGTGTTGGCCGATGTCCTCACGGGCATCCC < 41bp 0.771856529719357 0.366562522327123 0.88324344 0.36759737 prediction 0.543713059438714 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10268063 chr3:10268066 nonsynonymous SNV 0.958 3 24 hm5C_associated_SNPs_59518 0 0 1 0 2 IRAK2 chr3:10268117 5'GT 10268117 Upstream 52bp
chr7 55223600 55223600 1 + G C KIRC 55223596 + 55223576 55223616 41 AGCTATGAGATGGAGGAAGACGGCGTCCGCAAGTGTAAGAA AGCTATGAGATGGAGGAAGACGGCCTCCGCAAGTGTAAGAA < 41bp 0.800672167271528 0.528826331349462 0.8306669 0.3698317 prediction 0.543691671844132 Functional Loss - EGFR ENSG00000146648 CDS Human protein_coding chr7:55223596 chr7:55223600 nonsynonymous SNV 0.274 0 25 hm5C_associated_SNPs_59521 0 0 0 0 2 EGFR chr7:55223523 3'AG 55223523 Downstream 78bp
chr7 55223600 55223600 1 + G C KIRC 55223596 + 55223576 55223616 41 AGCTATGAGATGGAGGAAGACGGCGTCCGCAAGTGTAAGAA AGCTATGAGATGGAGGAAGACGGCCTCCGCAAGTGTAAGAA < 41bp 0.800672167271528 0.528826331349462 0.8306669 0.3698317 prediction 0.543691671844132 Functional Loss - EGFR ENSG00000146648 CDS Human protein_coding chr7:55223596 chr7:55223600 nonsynonymous SNV 0.274 0 25 hm5C_associated_SNPs_59521 0 0 0 0 2 EGFR chr7:55223639 5'GT 55223639 Upstream 40bp
chr7 36320782 36320782 1 + G C SKCM 36320781 + 36320761 36320801 41 TCCGCAAGTGGAAGGGGCCCCGGGGATGCTGGAAGGCTGTT TCCGCAAGTGGAAGGGGCCCCCGGGATGCTGGAAGGCTGTT < 41bp 0.840595124113169 0.568751273486522 0.8945001 0.8800893 prediction 0.543687701253294 Functional Loss - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36320781 chr7:36320782 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_59523 0 0 0 0 2 EEPD1 chr7:36320724 3'AG 36320724 Downstream 59bp
chr7 36320782 36320782 1 + G C SKCM 36320781 + 36320761 36320801 41 TCCGCAAGTGGAAGGGGCCCCGGGGATGCTGGAAGGCTGTT TCCGCAAGTGGAAGGGGCCCCCGGGATGCTGGAAGGCTGTT < 41bp 0.840595124113169 0.568751273486522 0.8945001 0.8800893 prediction 0.543687701253294 Functional Loss - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36320781 chr7:36320782 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_59523 0 0 0 0 2 EEPD1 chr7:36320834 5'GT 36320834 Upstream 53bp
chr8 85799883 85799883 1 + G T COAD 85799880 + 85799860 85799900 41 AAGAGAGTCTAGTGCTGATCCAAGAGGAATGTGTGTCAGAG AAGAGAGTCTAGTGCTGATCCAATAGGAATGTGTGTCAGAG < 41bp 0.771840451376246 0.467887440379062 0.5608019 0.17342716 prediction 0.543680902752491 Functional Loss - RALYL ENSG00000184672 CDS Human protein_coding chr8:85799880 chr8:85799883 stopgain 0.987 0 24 hm5C_associated_SNPs_59524 0 0 0 0 1 RALYL chr8:85799839 3'AG 85799839 Downstream 45bp
chr19 7595248 7595248 1 + C T THCA 7595246 + 7595226 7595266 41 GACATGTTTGTGACGTTCGCCGCCATGCAGGCGCAGCAGGG GACATGTTTGTGACGTTCGCCGTCATGCAGGCGCAGCAGGG < 41bp 0.774109290008788 0.502281394399585 0.7625977 0.42376724 prediction 0.543655791218405 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7595246 chr19:7595248 nonsynonymous SNV 0.976 2 23 hm5C_associated_SNPs_59528 0 0 0 0 1 MCOLN1 chr19:7595172 3'AG 7595172 Downstream 77bp
chr17 73258639 73258639 1 + G C KIRC 73258635 + 73258615 73258655 41 TTCAAGGATCCCTTGATTGACAAGGAATATTATCGCAAGCC TTCAAGGATCCCTTGATTGACAAGCAATATTATCGCAAGCC < 41bp 0.771824707650958 0.496552691575279 0.4608238 0.11720666 prediction 0.543649415301916 Functional Loss - MRPS7 ENSG00000125445 CDS Human protein_coding chr17:73258635 chr17:73258639 nonsynonymous SNV 0.460 0 25 hm5C_associated_SNPs_59529 0 0 1 0 1 MRPS7 chr17:73258578 3'AG 73258578 Downstream 62bp
chr12 124181004 124181004 1 + G T LAML 124181002 + 124180982 124181022 41 GTCCGAGCTCTAAATATCAACAGGATGAATAATGTCACGAC GTCCGAGCTCTAAATATCAACATGATGAATAATGTCACGAC < 41bp 0.867210128492176 0.595392966009579 0.42210713 0.08531058 prediction 0.543634324965192 Functional Loss - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124181002 chr12:124181004 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_59531 0 0 1 0 2 TCTN2 chr12:124180962 3'AG 124180962 Downstream 43bp
chr12 124181004 124181004 1 + G T LAML 124181002 + 124180982 124181022 41 GTCCGAGCTCTAAATATCAACAGGATGAATAATGTCACGAC GTCCGAGCTCTAAATATCAACATGATGAATAATGTCACGAC < 41bp 0.867210128492176 0.595392966009579 0.42210713 0.08531058 prediction 0.543634324965192 Functional Loss - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124181002 chr12:124181004 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_59531 0 0 1 0 2 TCTN2 chr12:124181042 5'GT 124181042 Upstream 39bp
chr2 113763617 113763617 1 + A C UCEC 113763613 + 113763593 113763633 41 TCAATCATCGGGTGTGGGTTCTTCAGGACCAGACGCTCATA TCAATCATCGGGTGTGGGTTCTTCCGGACCAGACGCTCATA < 41bp 0.771793572737433 0.352111843027419 0.17043832 0.17669606 prediction 0.543587145474866 Functional Loss - IL36A ENSG00000136694 CDS Human protein_coding chr2:113763613 chr2:113763617 nonsynonymous SNV 0.029 3 25 hm5C_associated_SNPs_59533 0 0 0 0 2 IL36A chr2:113763551 3'AG 113763551 Downstream 67bp
chr2 113763617 113763617 1 + A C UCEC 113763613 + 113763593 113763633 41 TCAATCATCGGGTGTGGGTTCTTCAGGACCAGACGCTCATA TCAATCATCGGGTGTGGGTTCTTCCGGACCAGACGCTCATA < 41bp 0.771793572737433 0.352111843027419 0.17043832 0.17669606 prediction 0.543587145474866 Functional Loss - IL36A ENSG00000136694 CDS Human protein_coding chr2:113763613 chr2:113763617 nonsynonymous SNV 0.029 3 25 hm5C_associated_SNPs_59533 0 0 0 0 2 IL36A chr2:113763664 5'GT 113763664 Upstream 48bp
chr2 149511697 149511697 1 + C T SKCM 149511695 + 149511675 149511715 41 AAGAACAGAGAAAATGCAAACTCGAAAGGTAATGTGCAAAT AAGAACAGAGAAAATGCAAACTTGAAAGGTAATGTGCAAAT < 41bp 0.799501506856223 0.527709387521813 0.873968 0.50266737 prediction 0.543584238668819 Functional Loss - EPC2 ENSG00000135999 CDS Human protein_coding chr2:149511695 chr2:149511697 stopgain 1.000 1 23 hm5C_associated_SNPs_59534 0 0 0 0 1 EPC2 chr2:149511702 5'GT 149511702 Upstream 6bp
chr7 99689334 99689334 1 + G T UCEC 99689331 + 99689311 99689351 41 ATCACCAAAACGTGCAACACCATGAACCAGTTTGTGAACAA ATCACCAAAACGTGCAACACCATTAACCAGTTTGTGAACAA < 41bp 0.77178605521442 0.400521198927185 0.03978145 0.06789446 prediction 0.54357211042884 Functional Loss - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99689331 chr7:99689334 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_59536 0 0 1 0 1 COPS6 chr7:99689272 3'AG 99689272 Downstream 63bp
chr10 23408279 23408279 1 + G T LUAD 23408277 + 23408257 23408297 41 CACTGGGTGGCCTTCGTTTTCCGAGGCTCATGGTACGTCTG CACTGGGTGGCCTTCGTTTTCCTAGGCTCATGGTACGTCTG < 41bp 0.771775895815892 0.421789932043122 0.92313486 0.7568048 prediction 0.543551791631783 Functional Loss - MSRB2 ENSG00000148450 CDS Human protein_coding chr10:23408277 chr10:23408279 stopgain 0.942 1 23 hm5C_associated_SNPs_59538 0 0 1 0 1 MSRB2 chr10:23408233 3'AG 23408233 Downstream 47bp
chr4 84377256 84377256 1 + G T BLCA 84377254 + 84377234 84377274 41 GCCGCTGTGGTTGCTGTTTGCGGTGGTCTAGGGAGGAAGAA GCCGCTGTGGTTGCTGTTTGCGTTGGTCTAGGGAGGAAGAA < 41bp 0.865871231564502 0.594102913785115 0.89500034 0.1578834 prediction 0.543536635558773 Functional Loss - MRPS18C ENSG00000163319 CDS Human protein_coding chr4:84377254 chr4:84377256 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_59539 0 0 1 0 1 MRPS18C chr4:84377330 5'GT 84377330 Upstream 75bp
chr11 22364891 22364891 1 + G T LUSC 22364888 + 22364868 22364908 41 CAGATTCCGGGAGGCTACATCGCGTCTCGGCTGGCAGCCAA CAGATTCCGGGAGGCTACATCGCTTCTCGGCTGGCAGCCAA < 41bp 0.902345528146541 0.630582024056806 0.560586 0.17622119 prediction 0.543527008179469 Functional Loss - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22364888 chr11:22364891 synonymous SNV . 0 24 hm5C_associated_SNPs_59540 0 0 0 0 2 SLC17A6 chr11:22364793 3'AG 22364793 Downstream 99bp
chr11 22364891 22364891 1 + G T LUSC 22364888 + 22364868 22364908 41 CAGATTCCGGGAGGCTACATCGCGTCTCGGCTGGCAGCCAA CAGATTCCGGGAGGCTACATCGCTTCTCGGCTGGCAGCCAA < 41bp 0.902345528146541 0.630582024056806 0.560586 0.17622119 prediction 0.543527008179469 Functional Loss - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22364888 chr11:22364891 synonymous SNV . 0 24 hm5C_associated_SNPs_59540 0 0 0 0 2 SLC17A6 chr11:22364911 5'GT 22364911 Upstream 21bp
chr7 137776586 137776586 1 + G T BLCA 137776583 + 137776563 137776603 41 GGACACTCAGGGTCCTCCAGCTAGATTATGTGGATCTTTAC GGACACTCAGGGTCCTCCAGCTATATTATGTGGATCTTTAC < 41bp 0.771757527460263 0.396395365071697 0.11368409 0.11207205 prediction 0.543515054920527 Functional Loss - AKR1D1 ENSG00000122787 CDS Human protein_coding chr7:137776583 chr7:137776586 nonsynonymous SNV 0.014 4 24 hm5C_associated_SNPs_59542 0 0 1 0 1 AKR1D1 chr7:137776630 5'GT 137776630 Upstream 45bp
chr17 60501347 60501347 1 + G T HNSC 60501345 + 60501325 60501365 41 GAAGCCGGTTCCTGAGAGATCCGGCGCGCGTCTTCCACCAC GAAGCCGGTTCCTGAGAGATCCTGCGCGCGTCTTCCACCAC < 41bp 0.771750793284072 0.42336951041633 0.8061563 0.20429465 prediction 0.543501586568144 Functional Loss - METTL2A ENSG00000087995 CDS Human protein_coding chr17:60501345 chr17:60501347 synonymous SNV . 0 23 hm5C_associated_SNPs_59543 0 0 1 0 1 METTL2A chr17:60501373 5'GT 60501373 Upstream 27bp
chr15 42821936 42821936 1 + G T THCA 42821934 + 42821914 42821954 41 TGACTCAAGTGGGCAGTATCCTGGGAAATCTAAAAGACATG TGACTCAAGTGGGCAGTATCCTTGGAAATCTAAAAGACATG < 41bp 0.84358559228187 0.571835220380089 0.72293407 0.057338238 prediction 0.543500743803563 Functional Loss - SNAP23 ENSG00000092531 CDS Human protein_coding chr15:42821934 chr15:42821936 synonymous SNV . 0 23 hm5C_associated_SNPs_59544 0 0 1 0 2 SNAP23 chr15:42821873 3'AG 42821873 Downstream 64bp
chr15 42821936 42821936 1 + G T THCA 42821934 + 42821914 42821954 41 TGACTCAAGTGGGCAGTATCCTGGGAAATCTAAAAGACATG TGACTCAAGTGGGCAGTATCCTTGGAAATCTAAAAGACATG < 41bp 0.84358559228187 0.571835220380089 0.72293407 0.057338238 prediction 0.543500743803563 Functional Loss - SNAP23 ENSG00000092531 CDS Human protein_coding chr15:42821934 chr15:42821936 synonymous SNV . 0 23 hm5C_associated_SNPs_59544 0 0 1 0 2 SNAP23 chr15:42822017 5'GT 42822017 Upstream 82bp
chr8 42586855 42586855 1 + G T UCEC 42586852 + 42586832 42586872 41 TCCCTGATGACCAAGGTCATCGTGAAATCAAACGGAACTGT TCCCTGATGACCAAGGTCATCGTTAAATCAAACGGAACTGT < 41bp 0.77174808465764 0.394512420332068 0.33550978 0.10712668 prediction 0.54349616931528 Functional Loss - CHRNB3 ENSG00000147432 CDS Human protein_coding chr8:42586852 chr8:42586855 synonymous SNV . 0 24 hm5C_associated_SNPs_59545 0 0 0 0 1 CHRNB3 chr8:42586810 3'AG 42586810 Downstream 46bp
chr12 58121178 58121178 1 - C G LIHC 58121179 - 58121159 58121199 41 CCGCGTGTGGGAAAGCGACACGCGAGGCCGTGCCAAGCCCT CCGCGTGTGGGAAAGCGACACCCGAGGCCGTGCCAAGCCCT < 41bp 0.827625692489377 0.555900924187357 0.30637833 0.13104922 prediction 0.54344953660404 Functional Loss - AGAP2 ENSG00000135439;ENSG00000255737 CDS Human other chr12:58121179 chr12:58121178 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_59551 0 0 0 0 1 AGAP2 chr12:58121143 5'GT 58121143 Upstream 36bp
chr16 30096341 30096341 1 + G T COAD 30096339 + 30096319 30096359 41 AGGCTGCTCCCCAAGAGACACGGGGCATCCCCTCCAAGAAG AGGCTGCTCCCCAAGAGACACGTGGCATCCCCTCCAAGAAG < 41bp 0.86407466884232 0.592359007203752 0.87651706 0.21386048 prediction 0.543431323277135 Functional Loss - PPP4C ENSG00000149923 CDS Human protein_coding chr16:30096339 chr16:30096341 synonymous SNV . 0 23 hm5C_associated_SNPs_59554 0 0 1 1 1 PPP4C chr16:30096254 3'AG 30096254 Downstream 88bp
chr11 117864106 117864106 1 + A C STAD 117864102 + 117864082 117864122 41 GAGAGTATGAGATTGCCATTCGCAAGGTGCCGGGAAACTTC GAGAGTATGAGATTGCCATTCGCACGGTGCCGGGAAACTTC < 41bp 0.771715629950878 0.353504484415507 0.24434975 0.16627276 prediction 0.543431259901756 Functional Loss - IL10RA ENSG00000110324 CDS Human protein_coding chr11:117864102 chr11:117864106 nonsynonymous SNV 0.243 2 25 hm5C_associated_SNPs_59555 0 0 0 0 1 IL10RA chr11:117864125 5'GT 117864125 Upstream 20bp
chr3 183897982 183897982 1 + G T UCEC 183897980 + 183897960 183898000 41 TTCTAGACTTTGGCTACCCACAGAATTCCGAGACAGGCGCG TTCTAGACTTTGGCTACCCACATAATTCCGAGACAGGCGCG < 41bp 0.803787390198473 0.532078941111263 0.43305147 0.13697445 prediction 0.543416898174419 Functional Loss - AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183897980 chr3:183897982 nonsynonymous SNV 0.990 4 23 hm5C_associated_SNPs_59556 0 0 1 0 2 AP2M1 chr3:183897957 3'AG 183897957 Downstream 26bp
chr3 183897982 183897982 1 + G T UCEC 183897980 + 183897960 183898000 41 TTCTAGACTTTGGCTACCCACAGAATTCCGAGACAGGCGCG TTCTAGACTTTGGCTACCCACATAATTCCGAGACAGGCGCG < 41bp 0.803787390198473 0.532078941111263 0.43305147 0.13697445 prediction 0.543416898174419 Functional Loss - AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183897980 chr3:183897982 nonsynonymous SNV 0.990 4 23 hm5C_associated_SNPs_59556 0 0 1 0 2 AP2M1 chr3:183898039 5'GT 183898039 Upstream 58bp
chr16 30939106 30939106 1 + G T SARC 30939104 + 30939084 30939124 41 GGCCGCCGTAGGGCCGACAACGGCGAGGAGGGCGCCAGCTT GGCCGCCGTAGGGCCGACAACGTCGAGGAGGGCGCCAGCTT < 41bp 0.870921466859919 0.599216145283199 0.87615114 0.52698314 prediction 0.543410643153438 Functional Loss - FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30939104 chr16:30939106 nonsynonymous SNV 0.921 1 23 hm5C_associated_SNPs_59558 0 0 1 0 1 FBXL19 chr16:30939066 3'AG 30939066 Downstream 41bp
chr2 29383260 29383260 1 + C T KIRC 29383258 + 29383238 29383278 41 GTTGCGAGGGGGAACTCCGCCTCGGAGAGAGAGTGTTAGTG GTTGCGAGGGGGAACTCCGCCTTGGAGAGAGAGTGTTAGTG < 41bp 0.783080879578807 0.511383800986642 0.11957887 0.029154718 prediction 0.543394157184329 Functional Loss - CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29383258 chr2:29383260 synonymous SNV . 0 23 hm5C_associated_SNPs_59560 0 0 1 0 1 CLIP4 chr2:29383199 3'AG 29383199 Downstream 62bp
chr11 123480966 123480966 1 + C T HNSC 123480964 + 123480944 123480984 41 TAGATGCCGAAGTCCTCACCCACGACGTGCCCTACCATGAC TAGATGCCGAAGTCCTCACCCATGACGTGCCCTACCATGAC < 41bp 0.804297103828256 0.532600211883472 0.051762283 0.10647398 prediction 0.543393783889568 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123480964 chr11:123480966 synonymous SNV . 0 23 hm5C_associated_SNPs_59561 0 0 1 0 2 GRAMD1B chr11:123480904 3'AG 123480904 Downstream 63bp
chr11 123480966 123480966 1 + C T HNSC 123480964 + 123480944 123480984 41 TAGATGCCGAAGTCCTCACCCACGACGTGCCCTACCATGAC TAGATGCCGAAGTCCTCACCCATGACGTGCCCTACCATGAC < 41bp 0.804297103828256 0.532600211883472 0.051762283 0.10647398 prediction 0.543393783889568 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123480964 chr11:123480966 synonymous SNV . 0 23 hm5C_associated_SNPs_59561 0 0 1 0 2 GRAMD1B chr11:123481046 5'GT 123481046 Upstream 81bp
chr12 51173961 51173961 1 + G C HNSC 51173957 + 51173937 51173977 41 TTCCCACAAGAGTACCACGTCAGAGACAGCACCTCAACCTG TTCCCACAAGAGTACCACGTCAGACACAGCACCTCAACCTG < 41bp 0.771694897975919 0.491551522989873 0.37443805 0.03286606 prediction 0.543389795951839 Functional Loss - ATF1 ENSG00000123268 CDS Human protein_coding chr12:51173957 chr12:51173961 nonsynonymous SNV 0.982 2 25 hm5C_associated_SNPs_59562 0 0 1 0 2 ATF1 chr12:51173923 3'AG 51173923 Downstream 39bp
chr12 51173961 51173961 1 + G C HNSC 51173957 + 51173937 51173977 41 TTCCCACAAGAGTACCACGTCAGAGACAGCACCTCAACCTG TTCCCACAAGAGTACCACGTCAGACACAGCACCTCAACCTG < 41bp 0.771694897975919 0.491551522989873 0.37443805 0.03286606 prediction 0.543389795951839 Functional Loss - ATF1 ENSG00000123268 CDS Human protein_coding chr12:51173957 chr12:51173961 nonsynonymous SNV 0.982 2 25 hm5C_associated_SNPs_59562 0 0 1 0 2 ATF1 chr12:51174021 5'GT 51174021 Upstream 61bp
chr19 39963709 39963709 1 + C T SKCM 39963707 + 39963687 39963727 41 ACGGCCCGTGTGGAGCTGCACTCCACCTGCCAGACCATCTC ACGGCCCGTGTGGAGCTGCACTTCACCTGCCAGACCATCTC < 41bp 0.803157773665745 0.531463585474721 0.8749319 0.12663811 prediction 0.543388376382049 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39963707 chr19:39963709 nonsynonymous SNV 0.835 4 23 hm5C_associated_SNPs_59563 0 0 1 0 3 SUPT5H chr19:39963652 3'AG 39963652 Downstream 58bp
chr19 39963709 39963709 1 + C T SKCM 39963707 + 39963687 39963727 41 ACGGCCCGTGTGGAGCTGCACTCCACCTGCCAGACCATCTC ACGGCCCGTGTGGAGCTGCACTTCACCTGCCAGACCATCTC < 41bp 0.803157773665745 0.531463585474721 0.8749319 0.12663811 prediction 0.543388376382049 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39963707 chr19:39963709 nonsynonymous SNV 0.835 4 23 hm5C_associated_SNPs_59563 0 0 1 0 3 SUPT5H chr19:39963752 5'GT 39963752 Upstream 44bp
chr19 39963709 39963709 1 + C T SKCM 39963707 + 39963687 39963727 41 ACGGCCCGTGTGGAGCTGCACTCCACCTGCCAGACCATCTC ACGGCCCGTGTGGAGCTGCACTTCACCTGCCAGACCATCTC < 41bp 0.803157773665745 0.531463585474721 0.8749319 0.12663811 prediction 0.543388376382049 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39963707 chr19:39963709 nonsynonymous SNV 0.835 4 23 hm5C_associated_SNPs_59563 0 0 1 0 3 SUPT5H chr19:39963754 5'GT 39963754 Upstream 46bp
chr13 25275010 25275010 1 + C T HNSC 25275008 + 25274988 25275028 41 CTTGTCAATGATCGATCCCCCTCGGTCCACCGTGCCAGATG CTTGTCAATGATCGATCCCCCTTGGTCCACCGTGCCAGATG < 41bp 0.775151215953134 0.503457896100074 0.15671182 0.08497736 prediction 0.543386639706119 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25275008 chr13:25275010 nonsynonymous SNV 0.755 4 23 hm5C_associated_SNPs_59564 0 0 0 0 1 ATP12A chr13:25275060 5'GT 25275060 Upstream 51bp
chr13 113052428 113052428 1 + G T STAD 113052426 + 113052406 113052446 41 ACCGAGCGAAATGCCAAGTACAGCATCAACATTATCAACAC ACCGAGCGAAATGCCAAGTACATCATCAACATTATCAACAC < 41bp 0.853688758856533 0.581996718680092 0.061493278 0.03220731 prediction 0.543384080352882 Functional Loss - SPACA7 ENSG00000153498 CDS Human protein_coding chr13:113052426 chr13:113052428 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_59565 0 0 0 0 2 SPACA7 chr13:113052363 3'AG 113052363 Downstream 66bp
chr13 113052428 113052428 1 + G T STAD 113052426 + 113052406 113052446 41 ACCGAGCGAAATGCCAAGTACAGCATCAACATTATCAACAC ACCGAGCGAAATGCCAAGTACATCATCAACATTATCAACAC < 41bp 0.853688758856533 0.581996718680092 0.061493278 0.03220731 prediction 0.543384080352882 Functional Loss - SPACA7 ENSG00000153498 CDS Human protein_coding chr13:113052426 chr13:113052428 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_59565 0 0 0 0 2 SPACA7 chr13:113052452 5'GT 113052452 Upstream 25bp
chr1 11576218 11576218 1 + G T LUAD 11576216 + 11576196 11576236 41 ACGCAGCTAACGTCTTCTCCCAGGTGCGGACCTGTCCTCCA ACGCAGCTAACGTCTTCTCCCATGTGCGGACCTGTCCTCCA < 41bp 0.771690797192053 0.418951796114418 0.92855453 0.29052866 prediction 0.543381594384105 Functional Loss - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11576216 chr1:11576218 nonsynonymous SNV 0.980 5 23 hm5C_associated_SNPs_59566 0 0 0 0 1 DISP3 chr1:11576218 5'GT 11576218 Upstream 1bp
chr4 56737333 56737333 1 + G C LGG 56737329 + 56737309 56737349 41 GAAGGAGATCTTGCTTCTTCCAGAGGCATTGAGGCCTGCAC GAAGGAGATCTTGCTTCTTCCAGACGCATTGAGGCCTGCAC < 41bp 0.771687509528385 0.498988700376499 0.90017426 0.84367883 prediction 0.543375019056771 Functional Loss - EXOC1 ENSG00000090989 CDS Human protein_coding chr4:56737329 chr4:56737333 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_59567 0 0 1 0 2 EXOC1 chr4:56737267 3'AG 56737267 Downstream 67bp
chr4 56737333 56737333 1 + G C LGG 56737329 + 56737309 56737349 41 GAAGGAGATCTTGCTTCTTCCAGAGGCATTGAGGCCTGCAC GAAGGAGATCTTGCTTCTTCCAGACGCATTGAGGCCTGCAC < 41bp 0.771687509528385 0.498988700376499 0.90017426 0.84367883 prediction 0.543375019056771 Functional Loss - EXOC1 ENSG00000090989 CDS Human protein_coding chr4:56737329 chr4:56737333 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_59567 0 0 1 0 2 EXOC1 chr4:56737399 5'GT 56737399 Upstream 67bp
chr3 51978223 51978223 1 + G T LUAD 51978221 + 51978201 51978241 41 TTCTTCACCTGCTGGAACCACTGGGGCCGTGTGGTGAGTGC TTCTTCACCTGCTGGAACCACTTGGGCCGTGTGGTGAGTGC < 41bp 0.864788457629049 0.593106991197126 0.244122 0.0708051 prediction 0.543362932863846 Functional Loss - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51978221 chr3:51978223 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_59568 0 0 0 0 1 PARP3 chr3:51978233 5'GT 51978233 Upstream 11bp
chr6 83880136 83880136 1 - C A UCEC 83880139 - 83880119 83880159 41 AAGACAAGCAGTTACACCCCCAGGATTACAGGAGGCAATCA AAGACAAGCAGTTACACCCCCAGTATTACAGGAGGCAATCA < 41bp 0.771678460545225 0.393620835534693 0.85869265 0.58098453 prediction 0.543356921090451 Functional Loss - PGM3 ENSG00000013375 CDS Human protein_coding chr6:83880139 chr6:83880136 nonsynonymous SNV 0.483 3 24 hm5C_associated_SNPs_59570 0 0 0 0 1 PGM3 chr6:83880197 3'AG 83880197 Downstream 62bp
chr7 63720641 63720641 1 + G T LUAD 63720638 + 63720618 63720658 41 ATGTAGTCATAGAATTCTCTCTGGAGGAGTGGCAATGCCTG ATGTAGTCATAGAATTCTCTCTGTAGGAGTGGCAATGCCTG < 41bp 0.896819431587887 0.625151247194338 0.27496475 0.07000989 prediction 0.543336368787097 Functional Loss - ZNF679 ENSG00000197123 CDS Human protein_coding chr7:63720638 chr7:63720641 stopgain 0.003 0 24 hm5C_associated_SNPs_59571 0 0 0 0 2 ZNF679 chr7:63720599 3'AG 63720599 Downstream 43bp
chr7 63720641 63720641 1 + G T LUAD 63720638 + 63720618 63720658 41 ATGTAGTCATAGAATTCTCTCTGGAGGAGTGGCAATGCCTG ATGTAGTCATAGAATTCTCTCTGTAGGAGTGGCAATGCCTG < 41bp 0.896819431587887 0.625151247194338 0.27496475 0.07000989 prediction 0.543336368787097 Functional Loss - ZNF679 ENSG00000197123 CDS Human protein_coding chr7:63720638 chr7:63720641 stopgain 0.003 0 24 hm5C_associated_SNPs_59571 0 0 0 0 2 ZNF679 chr7:63720725 5'GT 63720725 Upstream 85bp
chr7 98254269 98254269 1 + G C HNSC 98254265 + 98254245 98254285 41 TTTAAGTCACCAGATGCGTTCAAGGTGTCCCTCCCACTCCG TTTAAGTCACCAGATGCGTTCAAGCTGTCCCTCCCACTCCG < 41bp 0.786251468058458 0.514589062133715 0.8541846 0.33279413 prediction 0.543324811849486 Functional Loss - NPTX2 ENSG00000106236 CDS Human protein_coding chr7:98254265 chr7:98254269 nonsynonymous SNV 0.871 1 25 hm5C_associated_SNPs_59572 0 0 0 0 1 NPTX2 chr7:98254234 3'AG 98254234 Downstream 36bp
chr5 139574218 139574218 1 + G T STAD 139574216 + 139574196 139574236 41 ACGGCTGGCAGGGTGGACCTCAGGAGCCTCCTAAAACCACA ACGGCTGGCAGGGTGGACCTCATGAGCCTCCTAAAACCACA < 41bp 0.868399955708751 0.596739514377979 0.8290022 0.3376392 prediction 0.543320882661543 Functional Loss - CYSTM1 ENSG00000120306 CDS Human protein_coding chr5:139574216 chr5:139574218 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_59573 0 0 1 0 1 CYSTM1 chr5:139574237 5'GT 139574237 Upstream 20bp
chr12 100904587 100904587 1 + G T LIHC 100904585 + 100904565 100904605 41 CAGAACAAGTGGCAGGTCCTCTGGGACAGAACCTGGAAGTG CAGAACAAGTGGCAGGTCCTCTTGGACAGAACCTGGAAGTG < 41bp 0.860055878901466 0.588398471549988 0.7014774 0.05968365 prediction 0.543314814702955 Functional Loss - NR1H4 ENSG00000012504 CDS Human protein_coding chr12:100904585 chr12:100904587 synonymous SNV . 0 23 hm5C_associated_SNPs_59575 0 0 1 0 1 NR1H4 chr12:100904556 3'AG 100904556 Downstream 32bp
chr16 31121091 31121091 1 + C T SKCM 31121089 + 31121069 31121109 41 TTCATCATTGGCTGCAACCCCACCATACTGCACGTGGTAAG TTCATCATTGGCTGCAACCCCATCATACTGCACGTGGTAAG < 41bp 0.771642920427561 0.498900389711928 0.07742825 0.11112434 prediction 0.543285840855121 Functional Loss - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31121089 chr16:31121091 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_59576 0 0 1 0 2 BCKDK chr16:31120994 3'AG 31120994 Downstream 98bp
chr16 31121091 31121091 1 + C T SKCM 31121089 + 31121069 31121109 41 TTCATCATTGGCTGCAACCCCACCATACTGCACGTGGTAAG TTCATCATTGGCTGCAACCCCATCATACTGCACGTGGTAAG < 41bp 0.771642920427561 0.498900389711928 0.07742825 0.11112434 prediction 0.543285840855121 Functional Loss - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31121089 chr16:31121091 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_59576 0 0 1 0 2 BCKDK chr16:31121104 5'GT 31121104 Upstream 14bp
chr2 36764578 36764578 1 + A T LUSC 36764574 + 36764554 36764594 41 GAGCGGTGGGACCTTGACAGCTGCACCCACTGCTACTGCCT GAGCGGTGGGACCTTGACAGCTGCTCCCACTGCTACTGCCT < 41bp 0.771629154477247 0.436568167706645 0.26893908 0.42222333 prediction 0.543258308954494 Functional Loss - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36764574 chr2:36764578 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_59579 0 0 1 0 1 CRIM1 chr2:36764495 3'AG 36764495 Downstream 84bp
chr12 21680708 21680708 1 + G C UCEC 21680704 + 21680684 21680724 41 CAGAGCCGGAGAAAGGACCTCTCCGACCGGCCACTGCCGGG CAGAGCCGGAGAAAGGACCTCTCCCACCGGCCACTGCCGGG < 41bp 0.793873783683148 0.52226728216358 0.55729234 0.1348691 prediction 0.543213003039135 Functional Loss - SPX ENSG00000134548 CDS Human protein_coding chr12:21680704 chr12:21680708 nonsynonymous SNV 0.110 3 25 hm5C_associated_SNPs_59583 0 0 1 4 2 SPX chr12:21680661 3'AG 21680661 Downstream 48bp
chr12 21680708 21680708 1 + G C UCEC 21680704 + 21680684 21680724 41 CAGAGCCGGAGAAAGGACCTCTCCGACCGGCCACTGCCGGG CAGAGCCGGAGAAAGGACCTCTCCCACCGGCCACTGCCGGG < 41bp 0.793873783683148 0.52226728216358 0.55729234 0.1348691 prediction 0.543213003039135 Functional Loss - SPX ENSG00000134548 CDS Human protein_coding chr12:21680704 chr12:21680708 nonsynonymous SNV 0.110 3 25 hm5C_associated_SNPs_59583 0 0 1 4 2 SPX chr12:21680723 5'GT 21680723 Upstream 16bp
chr12 7476894 7476894 1 + C T rs185904781 7476892 + 7476872 7476912 41 AATCCACAGAAAACTGCTGCCACGATAAGAGGAGATTTTTA AATCCACAGAAAACTGCTGCCATGATAAGAGGAGATTTTTA < 41bp 0.772411380327294 0.500806294205348 0.06810415 0.09604788 prediction 0.543210172243892 Functional Loss - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7476892 chr12:7476894 nonsynonymous SNV 0.993 3 23 hm5C_associated_SNPs_59584 0 0 0 0 1 ACSM4 chr12:7476869 3'AG 7476869 Downstream 26bp
chr17 48539889 48539889 1 + C T SKCM 48539887 + 48539867 48539907 41 CACGGCAGCATCTGGACCAGCTCCAATACAACCAGCAGTTC CACGGCAGCATCTGGACCAGCTTCAATACAACCAGCAGTTC < 41bp 0.771603192909927 0.483348545640964 0.8352867 0.09371871 prediction 0.543206385819853 Functional Loss - ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48539887 chr17:48539889 synonymous SNV . 0 23 hm5C_associated_SNPs_59585 0 0 1 0 1 ACSF2 chr17:48539946 5'GT 48539946 Upstream 58bp
chr12 14591145 14591145 1 + C T UCEC 14591143 + 14591123 14591163 41 GACTTTGGCAGAATTGAAAACACGAGTGGAAAAGATTGAAT GACTTTGGCAGAATTGAAAACATGAGTGGAAAAGATTGAAT < 41bp 0.779937598522392 0.508349015855751 0.088590086 0.11912736 prediction 0.543177165333283 Functional Loss - ATF7IP ENSG00000171681 CDS Human protein_coding chr12:14591143 chr12:14591145 stopgain 0.998 1 23 hm5C_associated_SNPs_59586 0 0 1 0 2 ATF7IP chr12:14591064 3'AG 14591064 Downstream 82bp
chr12 14591145 14591145 1 + C T UCEC 14591143 + 14591123 14591163 41 GACTTTGGCAGAATTGAAAACACGAGTGGAAAAGATTGAAT GACTTTGGCAGAATTGAAAACATGAGTGGAAAAGATTGAAT < 41bp 0.779937598522392 0.508349015855751 0.088590086 0.11912736 prediction 0.543177165333283 Functional Loss - ATF7IP ENSG00000171681 CDS Human protein_coding chr12:14591143 chr12:14591145 stopgain 0.998 1 23 hm5C_associated_SNPs_59586 0 0 1 0 2 ATF7IP chr12:14591201 5'GT 14591201 Upstream 57bp
chr14 24771456 24771456 1 + C T SKCM 24771454 + 24771434 24771474 41 CTAGTCCCCTACTGCTATTTCTCCGAGATCAGACGAGTTCC CTAGTCCCCTACTGCTATTTCTTCGAGATCAGACGAGTTCC < 41bp 0.771577522725795 0.494496941570011 0.119693905 0.07237771 prediction 0.54315504545159 Functional Loss - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24771454 chr14:24771456 synonymous SNV . 0 23 hm5C_associated_SNPs_59587 0 0 1 0 1 NOP9 chr14:24771438 3'AG 24771438 Downstream 19bp
chr10 3143132 3143132 1 + G T LUAD 3143129 + 3143109 3143149 41 GCAGGTGCTGTAAGGGGTGACTGGAGGGAGAAGCCTGGCTG GCAGGTGCTGTAAGGGGTGACTGTAGGGAGAAGCCTGGCTG < 41bp 0.892537667227269 0.620965850317503 0.8509176 0.21877551 prediction 0.543143633819531 Functional Loss - PFKP ENSG00000067057 CDS Human protein_coding chr10:3143129 chr10:3143132 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_59590 0 0 1 0 2 PFKP chr10:3143113 3'AG 3143113 Downstream 20bp
chr10 3143132 3143132 1 + G T LUAD 3143129 + 3143109 3143149 41 GCAGGTGCTGTAAGGGGTGACTGGAGGGAGAAGCCTGGCTG GCAGGTGCTGTAAGGGGTGACTGTAGGGAGAAGCCTGGCTG < 41bp 0.892537667227269 0.620965850317503 0.8509176 0.21877551 prediction 0.543143633819531 Functional Loss - PFKP ENSG00000067057 CDS Human protein_coding chr10:3143129 chr10:3143132 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_59590 0 0 1 0 2 PFKP chr10:3143192 5'GT 3143192 Upstream 61bp
chr1 37941130 37941130 1 + G T COAD 37941128 + 37941108 37941148 41 CCTGTGGAGAGAAGCCTGTCCTGGAAGCCAGCCCCACCATG CCTGTGGAGAGAAGCCTGTCCTTGAAGCCAGCCCCACCATG < 41bp 0.867136953171646 0.595566998380335 0.24229622 0.10435921 prediction 0.543139909582623 Functional Loss - ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37941128 chr1:37941130 synonymous SNV . 0 23 hm5C_associated_SNPs_59591 0 0 0 0 1 ZC3H12A chr1:37941060 3'AG 37941060 Downstream 71bp
chr19 54483242 54483242 1 + G C LUSC 54483238 + 54483218 54483258 41 GAGGAACATCATTCTGGGCGCAGGGATCCTGTTCGTGGCAG GAGGAACATCATTCTGGGCGCAGGCATCCTGTTCGTGGCAG < 41bp 0.771565628021901 0.488902677574574 0.69632655 0.31745285 prediction 0.543131256043802 Functional Loss - CACNG8 ENSG00000142408 CDS Human protein_coding chr19:54483238 chr19:54483242 synonymous SNV . 0 25 hm5C_associated_SNPs_59592 0 0 0 0 1 CACNG8 chr19:54483261 5'GT 54483261 Upstream 20bp
chr9 141107528 141107528 1 + G T SARC 141107526 + 141107506 141107546 41 GTGAGGACATTTACAAGAACCGGCAGCGGCGGCAGCAGCAG GTGAGGACATTTACAAGAACCGTCAGCGGCGGCAGCAGCAG < 41bp 0.850054461038785 0.578489975800597 0.8009282 0.37081316 prediction 0.543128970476375 Functional Loss - LOC101928932;NONE ENSG00000233013 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:141107526 chr9:141107528 . . 0 23 hm5C_associated_SNPs_59593 0 0 0 0 1 LOC101928932;NONE chr9:141107474 3'AG 141107474 Downstream 55bp
chr15 44776530 44776530 1 + C T HNSC 44776528 + 44776508 44776548 41 AAAACCTAACAAACAGATATCTCGAGTAAGACGGAAAAGTC AAAACCTAACAAACAGATATCTTGAGTAAGACGGAAAAGTC < 41bp 0.794071558485223 0.522514097788034 0.20893836 0.09383345 prediction 0.543114921394378 Functional Loss - CTDSPL2 ENSG00000137770 CDS Human protein_coding chr15:44776528 chr15:44776530 stopgain 1.000 1 23 hm5C_associated_SNPs_59595 0 0 1 0 1 CTDSPL2 chr15:44776560 5'GT 44776560 Upstream 31bp
chr1 156845906 156845906 1 + C T SKCM 156845904 + 156845884 156845924 41 TCAAGCGCCGGGACATCGTGCTCAAGTGGGAGCTGGGGGAG TCAAGCGCCGGGACATCGTGCTTAAGTGGGAGCTGGGGGAG < 41bp 0.784770614454174 0.513222109368092 0.14930949 0.20373434 prediction 0.543097010172164 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845904 chr1:156845906 synonymous SNV . 0 23 hm5C_associated_SNPs_59597 0 0 1 0 3 NTRK1 chr1:156845863 3'AG 156845863 Downstream 44bp
chr1 156845906 156845906 1 + C T SKCM 156845904 + 156845884 156845924 41 TCAAGCGCCGGGACATCGTGCTCAAGTGGGAGCTGGGGGAG TCAAGCGCCGGGACATCGTGCTTAAGTGGGAGCTGGGGGAG < 41bp 0.784770614454174 0.513222109368092 0.14930949 0.20373434 prediction 0.543097010172164 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845904 chr1:156845906 synonymous SNV . 0 23 hm5C_associated_SNPs_59597 0 0 1 0 3 NTRK1 chr1:156845872 3'AG 156845872 Downstream 35bp
chr1 156845906 156845906 1 + C T SKCM 156845904 + 156845884 156845924 41 TCAAGCGCCGGGACATCGTGCTCAAGTGGGAGCTGGGGGAG TCAAGCGCCGGGACATCGTGCTTAAGTGGGAGCTGGGGGAG < 41bp 0.784770614454174 0.513222109368092 0.14930949 0.20373434 prediction 0.543097010172164 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845904 chr1:156845906 synonymous SNV . 0 23 hm5C_associated_SNPs_59597 0 0 1 0 3 NTRK1 chr1:156846002 5'GT 156846002 Upstream 97bp
chr19 17986870 17986870 1 + A T HNSC 17986866 + 17986846 17986886 41 TCATGCTTGTGGGCGGGCCCCGCCAGGTGCTCACGCTGGCC TCATGCTTGTGGGCGGGCCCCGCCTGGTGCTCACGCTGGCC < 41bp 0.865410295279811 0.593876821708199 0.826983 0.1756903 prediction 0.543066947143225 Functional Loss - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17986866 chr19:17986870 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_59601 0 0 0 0 1 SLC5A5 chr19:17986915 5'GT 17986915 Upstream 46bp
chr3 172046847 172046847 1 + C T COAD 172046845 + 172046825 172046865 41 GTACACATTCAGGCTGGCCGCTCGAAACGACATTGGTACCA GTACACATTCAGGCTGGCCGCTTGAAACGACATTGGTACCA < 41bp 0.771524617212583 0.492175374354389 0.32335117 0.23358536 prediction 0.543049234425165 Functional Loss - FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172046845 chr3:172046847 stopgain 0.884 1 23 hm5C_associated_SNPs_59603 0 0 1 0 1 FNDC3B chr3:172046866 5'GT 172046866 Upstream 20bp
chr20 57769774 57769774 1 + A T rs76525136 57769770 + 57769750 57769790 41 GGGAGCAATGGAGGATGGACCTGGACAAGCCCTGGAGAAGG GGGAGCAATGGAGGATGGACCTGGTCAAGCCCTGGAGAAGG < 41bp 0.821388641820957 0.549891918432464 0.4133348 0.28267756 prediction 0.542993446776987 Functional Loss - ZNF831 ENSG00000124203 CDS Human protein_coding chr20:57769770 chr20:57769774 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_59610 0 0 0 0 1 ZNF831 chr20:57769812 5'GT 57769812 Upstream 39bp
chr17 7478559 7478559 1 + C T CESC 7478557 + 7478537 7478577 41 GGCCTTGGTCCTAGCACCCACTCGAGAATTGGCTCAGCAGG GGCCTTGGTCCTAGCACCCACTTGAGAATTGGCTCAGCAGG < 41bp 0.786544623146671 0.515053308439217 0.6563983 0.15957057 prediction 0.542982629414908 Functional Loss - EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7478557 chr17:7478559 stopgain 0.962 1 23 hm5C_associated_SNPs_59611 0 0 1 0 1 EIF4A1 chr17:7478576 5'GT 7478576 Upstream 18bp
chr7 127230187 127230187 1 + A T BLCA 127230183 + 127230163 127230203 41 AAGAATCTGCTGATGAACTCCAGAAGATGGTGAGTACCCAG AAGAATCTGCTGATGAACTCCAGATGATGGTGAGTACCCAG < 41bp 0.83932078917023 0.567830053792651 0.53035265 0.880185 prediction 0.542981470755159 Functional Loss - ARF5 ENSG00000004059 CDS Human protein_coding chr7:127230183 chr7:127230187 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_59612 0 0 1 0 1 ARF5 chr7:127230120 3'AG 127230120 Downstream 68bp
chr9 100075583 100075583 1 + A C BRCA 100075579 + 100075559 100075599 41 GAACACAAGAGGAAGAGCTACGAGAGCGCTCTGGCCAGCTT GAACACAAGAGGAAGAGCTACGAGCGCGCTCTGGCCAGCTT < 41bp 0.771483581806074 0.376333145083366 0.9060974 0.8887886 prediction 0.542967163612149 Functional Loss - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100075579 chr9:100075583 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_59613 0 0 0 0 3 CCDC180 chr9:100075518 3'AG 100075518 Downstream 66bp
chr9 100075583 100075583 1 + A C BRCA 100075579 + 100075559 100075599 41 GAACACAAGAGGAAGAGCTACGAGAGCGCTCTGGCCAGCTT GAACACAAGAGGAAGAGCTACGAGCGCGCTCTGGCCAGCTT < 41bp 0.771483581806074 0.376333145083366 0.9060974 0.8887886 prediction 0.542967163612149 Functional Loss - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100075579 chr9:100075583 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_59613 0 0 0 0 3 CCDC180 chr9:100075618 5'GT 100075618 Upstream 36bp
chr9 100075583 100075583 1 + A C BRCA 100075579 + 100075559 100075599 41 GAACACAAGAGGAAGAGCTACGAGAGCGCTCTGGCCAGCTT GAACACAAGAGGAAGAGCTACGAGCGCGCTCTGGCCAGCTT < 41bp 0.771483581806074 0.376333145083366 0.9060974 0.8887886 prediction 0.542967163612149 Functional Loss - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100075579 chr9:100075583 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_59613 0 0 0 0 3 CCDC180 chr9:100075627 5'GT 100075627 Upstream 45bp
chr12 49312138 49312138 1 + C T CESC 49312136 + 49312116 49312156 41 GGAGAAAGTTCCAGGATGTACTCAAGAATTACACTGATGCC GGAGAAAGTTCCAGGATGTACTTAAGAATTACACTGATGCC < 41bp 0.796399489310161 0.524925870490299 0.32234612 0.12142399 prediction 0.542947237639724 Functional Loss - CCDC65 ENSG00000139537 CDS Human protein_coding chr12:49312136 chr12:49312138 synonymous SNV . 0 23 hm5C_associated_SNPs_59615 0 0 0 0 1 CCDC65 chr12:49312058 3'AG 49312058 Downstream 81bp
chr19 10221020 10221020 1 + G T rs149310564 10221018 + 10220998 10221038 41 AGATCGGCCCGCGGATGACACTGCAGCTCATCAAGGTCCAG AGATCGGCCCGCGGATGACACTTCAGCTCATCAAGGTCCAG < 41bp 0.870675407676015 0.599229167643998 0.25464666 0.07725403 prediction 0.542892480064033 Functional Loss - PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10221018 chr19:10221020 synonymous SNV . 0 23 hm5C_associated_SNPs_59617 0 0 1 0 2 PPAN;PPAN-P2RY11 chr19:10221000 3'AG 10221000 Downstream 21bp
chr19 10221020 10221020 1 + G T rs149310564 10221018 + 10220998 10221038 41 AGATCGGCCCGCGGATGACACTGCAGCTCATCAAGGTCCAG AGATCGGCCCGCGGATGACACTTCAGCTCATCAAGGTCCAG < 41bp 0.870675407676015 0.599229167643998 0.25464666 0.07725403 prediction 0.542892480064033 Functional Loss - PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10221018 chr19:10221020 synonymous SNV . 0 23 hm5C_associated_SNPs_59617 0 0 1 0 2 PPAN;PPAN-P2RY11 chr19:10221078 5'GT 10221078 Upstream 59bp
chr18 48252451 48252451 1 + C T HNSC 48252449 + 48252429 48252469 41 CCCTGAGGACGAGCCCACCTCACAACACCCCTTCCGCATTG CCCTGAGGACGAGCCCACCTCATAACACCCCTTCCGCATTG < 41bp 0.771440148077951 0.495142573812446 0.03860593 0.015687227 prediction 0.542880296155901 Functional Loss - MAPK4 ENSG00000141639 CDS Human protein_coding chr18:48252449 chr18:48252451 stopgain 0.947 1 23 hm5C_associated_SNPs_59618 0 0 1 0 1 MAPK4 chr18:48252545 5'GT 48252545 Upstream 95bp
chr10 101458321 101458321 1 + C T rs193135919 101458319 + 101458299 101458339 41 GTCAGAAGACAGGTCTGAGTCCCGACAATCCATTTCTGGAT GTCAGAAGACAGGTCTGAGTCCTGACAATCCATTTCTGGAT < 41bp 0.788248923595541 0.516811194773535 0.11024651 0.07439837 prediction 0.542875457644011 Functional Loss - ENTPD7 ENSG00000198018 CDS Human protein_coding chr10:101458319 chr10:101458321 synonymous SNV . 0 23 hm5C_associated_SNPs_59619 0 0 1 0 1 ENTPD7 chr10:101458291 3'AG 101458291 Downstream 31bp
chr16 29001322 29001322 1 + G T UCEC 29001319 + 29001299 29001339 41 CTCCAGATTACGAGAATCTGCAGGAGCTGAACTGAGGGCCT CTCCAGATTACGAGAATCTGCAGTAGCTGAACTGAGGGCCT < 41bp 0.900277964253182 0.62884086382912 0.9087311 0.5947654 prediction 0.542874200848125 Functional Loss - LAT ENSG00000213658 CDS Human protein_coding chr16:29001319 chr16:29001322 stopgain 0.986 0 24 hm5C_associated_SNPs_59620 0 0 1 0 1 LAT chr16:29001254 3'AG 29001254 Downstream 69bp
chr17 37872035 37872035 1 + G T rs4252633 37872032 + 37872012 37872052 41 CTGCAAGGGCTGGGCATCAGCTGGCTGGGGCTGCGCTCACT CTGCAAGGGCTGGGCATCAGCTGTCTGGGGCTGCGCTCACT < 41bp 0.7714297419189 0.378446473663889 0.7091031 0.3177763 prediction 0.5428594838378 Functional Loss - ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37872032 chr17:37872035 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_59623 1 0 1 0 1 ERBB2 chr17:37871993 3'AG 37871993 Downstream 43bp
chr15 79614395 79614395 1 + G T LUAD 79614392 + 79614372 79614412 41 CCCAGACGCATTACCGGCTGCGGGAGGCCCAGGACCGGGCC CCCAGACGCATTACCGGCTGCGGTAGGCCCAGGACCGGGCC < 41bp 0.899730134617134 0.628306754792742 0.9347445 0.78240806 prediction 0.542846759648784 Functional Loss - TMED3 ENSG00000166557 CDS Human protein_coding chr15:79614392 chr15:79614395 stopgain 0.978 1 24 hm5C_associated_SNPs_59625 0 0 1 0 1 TMED3 chr15:79614320 3'AG 79614320 Downstream 76bp
chr4 48852092 48852092 1 + C T GBM 48852090 + 48852070 48852110 41 AGGACAAGCACGACGATCTTCACCACCTGGGTAGGCCAGAT AGGACAAGCACGACGATCTTCATCACCTGGGTAGGCCAGAT < 41bp 0.784084758184786 0.512667365915933 0.14602837 0.19661248 prediction 0.542834784537705 Functional Loss - OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48852090 chr4:48852092 nonsynonymous SNV 0.657 0 23 hm5C_associated_SNPs_59627 0 0 1 0 1 OCIAD1 chr4:48852099 5'GT 48852099 Upstream 8bp
chr14 76455293 76455293 1 + G T UCEC 76455290 + 76455270 76455310 41 GCCGAGAATCACCTCAATGGCAAGAATTCCTCTTTGACTCT GCCGAGAATCACCTCAATGGCAATAATTCCTCTTTGACTCT < 41bp 0.77141050830918 0.427242023318461 0.4602763 0.08454502 prediction 0.54282101661836 Functional Loss - IFT43 ENSG00000119650 CDS Human protein_coding chr14:76455290 chr14:76455293 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_59629 0 0 1 0 2 IFT43 chr14:76455228 3'AG 76455228 Downstream 66bp
chr14 76455293 76455293 1 + G T UCEC 76455290 + 76455270 76455310 41 GCCGAGAATCACCTCAATGGCAAGAATTCCTCTTTGACTCT GCCGAGAATCACCTCAATGGCAATAATTCCTCTTTGACTCT < 41bp 0.77141050830918 0.427242023318461 0.4602763 0.08454502 prediction 0.54282101661836 Functional Loss - IFT43 ENSG00000119650 CDS Human protein_coding chr14:76455290 chr14:76455293 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_59629 0 0 1 0 2 IFT43 chr14:76455320 5'GT 76455320 Upstream 28bp
chr16 318797 318797 1 + G C CESC 318793 + 318773 318813 41 AGGCTCACACTGGGCGACAGCGGAGAGGCTCTTGGACGGGG AGGCTCACACTGGGCGACAGCGGACAGGCTCTTGGACGGGG < 41bp 0.771406854844039 0.478626447203357 0.9012197 0.384808 prediction 0.542813709688078 Functional Loss - RGS11 ENSG00000167930;ENSG00000269881 CDS Human other chr16:318793 chr16:318797 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_59630 0 0 0 0 1 RGS11 chr16:318775 3'AG 318775 Downstream 23bp
chr9 101797359 101797359 1 + G T LUSC 101797357 + 101797337 101797377 41 AAAGGGACAAGCTGGCCCTCCTGGGGTCATGGGACCCCCAG AAAGGGACAAGCTGGCCCTCCTTGGGTCATGGGACCCCCAG < 41bp 0.86747342061922 0.596091997181909 0.91789883 0.37844884 prediction 0.542762846874623 Functional Loss - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101797357 chr9:101797359 nonsynonymous SNV 0.600 5 23 hm5C_associated_SNPs_59634 0 0 0 0 1 COL15A1 chr9:101797436 5'GT 101797436 Upstream 78bp
chr3 44945479 44945479 1 + G T UCEC 44945476 + 44945456 44945496 41 CAACGCCGCAGGAGCGAAGCCAGGGTGAGTGGGTGGCAGGA CAACGCCGCAGGAGCGAAGCCAGTGTGAGTGGGTGGCAGGA < 41bp 0.89415112744646 0.622776291565566 0.8994989 0.3253345 prediction 0.542749671761789 Functional Loss - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44945476 chr3:44945479 nonsynonymous SNV 0.013 3 24 hm5C_associated_SNPs_59635 0 0 0 0 1 TGM4 chr3:44945479 3'AG 44945479 Downstream 1bp
chr17 73089849 73089849 1 + G T UCEC 73089847 + 73089827 73089867 41 GTGTATCGGCATCTTCTTCACTGAATTGCAATGGGAGTTCC GTGTATCGGCATCTTCTTCACTTAATTGCAATGGGAGTTCC < 41bp 0.862403895764641 0.59103627244539 0.24159688 0.22352287 prediction 0.542735246638502 Functional Loss - SLC16A5 ENSG00000170190 CDS Human protein_coding chr17:73089847 chr17:73089849 stopgain 0.513 0 23 hm5C_associated_SNPs_59636 0 0 0 0 1 SLC16A5 chr17:73089930 5'GT 73089930 Upstream 82bp
chr12 21679861 21679861 1 + G T LUAD 21679859 + 21679839 21679879 41 CAACAACCTTGGCTCTTTTCCTGGTGTTTGTTTTCCTGGGA CAACAACCTTGGCTCTTTTCCTTGTGTTTGTTTTCCTGGGA < 41bp 0.771367327926716 0.432017768154556 0.7454177 0.10340476 prediction 0.542734655853432 Functional Loss - SPX ENSG00000134548 CDS Human protein_coding chr12:21679859 chr12:21679861 synonymous SNV . 0 23 hm5C_associated_SNPs_59637 0 0 0 0 2 SPX chr12:21679820 3'AG 21679820 Downstream 42bp
chr12 21679861 21679861 1 + G T LUAD 21679859 + 21679839 21679879 41 CAACAACCTTGGCTCTTTTCCTGGTGTTTGTTTTCCTGGGA CAACAACCTTGGCTCTTTTCCTTGTGTTTGTTTTCCTGGGA < 41bp 0.771367327926716 0.432017768154556 0.7454177 0.10340476 prediction 0.542734655853432 Functional Loss - SPX ENSG00000134548 CDS Human protein_coding chr12:21679859 chr12:21679861 synonymous SNV . 0 23 hm5C_associated_SNPs_59637 0 0 0 0 2 SPX chr12:21679900 5'GT 21679900 Upstream 40bp
chr10 101567916 101567916 1 + C T SKCM 101567914 + 101567894 101567934 41 GATGCACAAAAGGCCTTCACCTCCATTACCCTCTTCAATAT GATGCACAAAAGGCCTTCACCTTCATTACCCTCTTCAATAT < 41bp 0.811352479698189 0.539985808191281 0.9478152 0.061826468 prediction 0.542733343013816 Functional Loss - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101567914 chr10:101567916 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_59638 0 0 1 0 2 ABCC2 chr10:101567840 3'AG 101567840 Downstream 77bp
chr10 101567916 101567916 1 + C T SKCM 101567914 + 101567894 101567934 41 GATGCACAAAAGGCCTTCACCTCCATTACCCTCTTCAATAT GATGCACAAAAGGCCTTCACCTTCATTACCCTCTTCAATAT < 41bp 0.811352479698189 0.539985808191281 0.9478152 0.061826468 prediction 0.542733343013816 Functional Loss - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101567914 chr10:101567916 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_59638 0 0 1 0 2 ABCC2 chr10:101567986 5'GT 101567986 Upstream 71bp
chr19 16874747 16874747 1 + G T COAD 16874744 + 16874724 16874764 41 GCCGCCTGGAGGAGCTGAAACAGGAGGTTCTGGGTAAGGGC GCCGCCTGGAGGAGCTGAAACAGTAGGTTCTGGGTAAGGGC < 41bp 0.908771461992006 0.637405527539327 0.9262654 0.75190663 prediction 0.542731868905359 Functional Loss - NWD1 ENSG00000188039 CDS Human protein_coding chr19:16874744 chr19:16874747 stopgain 0.992 0 24 hm5C_associated_SNPs_59639 0 0 0 0 1 NWD1 chr19:16874756 5'GT 16874756 Upstream 10bp
chr12 57970638 57970638 1 + G T LUAD 57970635 + 57970615 57970655 41 ACGAGAAGAGCACCAAGCTGCAGGAGCTGACGTGAGTGGCA ACGAGAAGAGCACCAAGCTGCAGTAGCTGACGTGAGTGGCA < 41bp 0.771364945509894 0.393244588097974 0.7879598 0.23610285 prediction 0.542729891019788 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57970635 chr12:57970638 stopgain 0.984 1 24 hm5C_associated_SNPs_59640 0 0 0 0 2 KIF5A chr12:57970544 3'AG 57970544 Downstream 95bp
chr12 57970638 57970638 1 + G T LUAD 57970635 + 57970615 57970655 41 ACGAGAAGAGCACCAAGCTGCAGGAGCTGACGTGAGTGGCA ACGAGAAGAGCACCAAGCTGCAGTAGCTGACGTGAGTGGCA < 41bp 0.771364945509894 0.393244588097974 0.7879598 0.23610285 prediction 0.542729891019788 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57970635 chr12:57970638 stopgain 0.984 1 24 hm5C_associated_SNPs_59640 0 0 0 0 2 KIF5A chr12:57970645 5'GT 57970645 Upstream 8bp
chr12 57970637 57970637 1 + G T LUAD 57970635 + 57970615 57970655 41 ACGAGAAGAGCACCAAGCTGCAGGAGCTGACGTGAGTGGCA ACGAGAAGAGCACCAAGCTGCATGAGCTGACGTGAGTGGCA < 41bp 0.771364945509894 0.436131952827751 0.7879598 0.09134179 prediction 0.542729891019788 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57970635 chr12:57970637 nonsynonymous SNV 0.963 1 23 hm5C_associated_SNPs_59641 0 0 0 0 2 KIF5A chr12:57970544 3'AG 57970544 Downstream 94bp
chr12 57970637 57970637 1 + G T LUAD 57970635 + 57970615 57970655 41 ACGAGAAGAGCACCAAGCTGCAGGAGCTGACGTGAGTGGCA ACGAGAAGAGCACCAAGCTGCATGAGCTGACGTGAGTGGCA < 41bp 0.771364945509894 0.436131952827751 0.7879598 0.09134179 prediction 0.542729891019788 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57970635 chr12:57970637 nonsynonymous SNV 0.963 1 23 hm5C_associated_SNPs_59641 0 0 0 0 2 KIF5A chr12:57970645 5'GT 57970645 Upstream 9bp
chr19 48342621 48342621 1 + G T PAAD 48342619 + 48342599 48342639 41 CTAAATGCAGGCAGCAGCGACAGCAGCAGAAACAGCAGCAG CTAAATGCAGGCAGCAGCGACATCAGCAGAAACAGCAGCAG < 41bp 0.869836810160738 0.598477521199715 0.7430128 0.16895592 prediction 0.542718577922046 Functional Loss - CRX ENSG00000105392 CDS Human protein_coding chr19:48342619 chr19:48342621 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_59642 0 0 0 0 1 CRX chr19:48342577 3'AG 48342577 Downstream 45bp
chr5 131993967 131993967 1 + G T SARC 131993965 + 131993945 131993985 41 ATTGCTCTCACTTGCCTTGGCGGCTTTGCCTCCCCAGGCCC ATTGCTCTCACTTGCCTTGGCGTCTTTGCCTCCCCAGGCCC < 41bp 0.77135427214305 0.425662643395616 0.70732826 0.24957874 prediction 0.542708544286099 Functional Loss - IL13 ENSG00000169194 CDS Human protein_coding chr5:131993965 chr5:131993967 nonsynonymous SNV 0.076 3 23 hm5C_associated_SNPs_59646 0 0 0 0 1 IL13 chr5:131994052 5'GT 131994052 Upstream 86bp
chrX 47069479 47069479 1 + C T UCEC 47069477 + 47069457 47069497 41 CACCACTGGCACACCCAGTACTCGAACAACATCCGGCAGCT CACCACTGGCACACCCAGTACTTGAACAACATCCGGCAGCT < 41bp 0.801723993084495 0.530382673525814 0.9018315 0.11258298 prediction 0.542682639117363 Functional Loss - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47069477 chrX:47069479 nonsynonymous SNV 0.991 0 23 hm5C_associated_SNPs_59648 0 0 1 0 1 UBA1 chrX:47069522 5'GT 47069522 Upstream 44bp
chr5 110819772 110819772 1 + A C LUSC 110819768 + 110819748 110819788 41 TCTTCGCGCCTGGGAAGTGCCAGCAGCAGCCATGGCAGCAT TCTTCGCGCCTGGGAAGTGCCAGCCGCAGCCATGGCAGCAT < 41bp 0.909951660371051 0.63861215751806 0.7392681 0.4815596 prediction 0.542679005705982 Functional Loss - CAMK4 ENSG00000152495 CDS Human protein_coding chr5:110819768 chr5:110819772 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_59650 0 0 0 0 1 CAMK4 chr5:110819724 3'AG 110819724 Downstream 49bp
chr1 158224908 158224908 1 + G T LUSC 158224905 + 158224885 158224925 41 CCTCTCTCCTTCCATGTCACCTGGATCGCATCCTTTTACAA CCTCTCTCCTTCCATGTCACCTGTATCGCATCCTTTTACAA < 41bp 0.771327502475013 0.393049401226318 0.02630961 0.007885367 prediction 0.542655004950026 Functional Loss - CD1A ENSG00000158477 CDS Human protein_coding chr1:158224905 chr1:158224908 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_59651 0 0 0 0 1 CD1A chr1:158224874 3'AG 158224874 Downstream 35bp
chr15 91016196 91016196 1 + G T UCEC 91016194 + 91016174 91016214 41 GTTCGACAGGAATTCCGATCCAGGATGAATTTCCTGAAGAA GTTCGACAGGAATTCCGATCCATGATGAATTTCCTGAAGAA < 41bp 0.848565064938105 0.577239214294524 0.76872754 0.24551865 prediction 0.542651701287163 Functional Loss - IQGAP1 ENSG00000140575 CDS Human protein_coding chr15:91016194 chr15:91016196 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_59652 0 0 1 0 1 IQGAP1 chr15:91016242 5'GT 91016242 Upstream 47bp
chrX 49355830 49355830 1 + G T LUAD 49355828 + 49355808 49355848 41 GTTCAGTGATGAAGTGGAACCAGCAACACCTGAAGAAGGGG GTTCAGTGATGAAGTGGAACCATCAACACCTGAAGAAGGGG < 41bp 0.7713210197444 0.44087486850228 0.39175308 0.1569821 prediction 0.542642039488801 Functional Loss - GAGE2A ENSG00000189064 CDS Human protein_coding chrX:49355828 chrX:49355830 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_59653 0 0 0 0 2 GAGE2A chrX:49355800 3'AG 49355800 Downstream 31bp
chrX 49355830 49355830 1 + G T LUAD 49355828 + 49355808 49355848 41 GTTCAGTGATGAAGTGGAACCAGCAACACCTGAAGAAGGGG GTTCAGTGATGAAGTGGAACCATCAACACCTGAAGAAGGGG < 41bp 0.7713210197444 0.44087486850228 0.39175308 0.1569821 prediction 0.542642039488801 Functional Loss - GAGE2A ENSG00000189064 CDS Human protein_coding chrX:49355828 chrX:49355830 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_59653 0 0 0 0 2 GAGE2A chrX:49355920 5'GT 49355920 Upstream 91bp
chr17 53392612 53392612 1 + A T SKCM 53392608 + 53392588 53392628 41 GTCAGCTGTTGCCAGCAAACCGCAATACACCAAGTCCCATT GTCAGCTGTTGCCAGCAAACCGCATTACACCAAGTCCCATT < 41bp 0.771316379610074 0.438883801383742 0.10697809 0.22628939 prediction 0.542632759220148 Functional Loss - HLF ENSG00000108924 CDS Human protein_coding chr17:53392608 chr17:53392612 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_59654 0 0 1 0 2 HLF chr17:53392588 3'AG 53392588 Downstream 25bp
chr17 53392612 53392612 1 + A T SKCM 53392608 + 53392588 53392628 41 GTCAGCTGTTGCCAGCAAACCGCAATACACCAAGTCCCATT GTCAGCTGTTGCCAGCAAACCGCATTACACCAAGTCCCATT < 41bp 0.771316379610074 0.438883801383742 0.10697809 0.22628939 prediction 0.542632759220148 Functional Loss - HLF ENSG00000108924 CDS Human protein_coding chr17:53392608 chr17:53392612 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_59654 0 0 1 0 2 HLF chr17:53392593 3'AG 53392593 Downstream 20bp
chr6 32138254 32138254 1 - C A LUAD 32138257 - 32138237 32138277 41 CTTCATCGACCGGAAGCGCACGGGGGATGCCATCAGTGTCA CTTCATCGACCGGAAGCGCACGGTGGATGCCATCAGTGTCA < 41bp 0.771311287612788 0.476639998883779 0.93653077 0.27453816 prediction 0.542622575225577 Functional Loss - AGPAT1 ENSG00000204310 CDS Human protein_coding chr6:32138257 chr6:32138254 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_59656 0 0 1 0 1 AGPAT1 chr6:32138202 5'GT 32138202 Upstream 53bp
chr9 115600817 115600817 1 + C T rs192545589 115600815 + 115600795 115600835 41 AGAGAATACGGGCCTGTGTACTCCACATGGAGCGCCTTGGA AGAGAATACGGGCCTGTGTACTTCACATGGAGCGCCTTGGA < 41bp 0.771311245160807 0.472504617757905 0.74923605 0.13526651 prediction 0.542622490321613 Functional Loss - SNX30 ENSG00000148158 CDS Human protein_coding chr9:115600815 chr9:115600817 nonsynonymous SNV 0.917 4 23 hm5C_associated_SNPs_59657 0 0 1 0 1 SNX30 chr9:115600778 3'AG 115600778 Downstream 40bp
chr13 42769041 42769041 1 + C T SKCM 42769039 + 42769019 42769059 41 AGTTAAAACTGCACCTCGGTCTCCAGATGCCCGGGCAAGTT AGTTAAAACTGCACCTCGGTCTTCAGATGCCCGGGCAAGTT < 41bp 0.771307841707053 0.486507699315156 0.93788695 0.8535856 prediction 0.542615683414106 Functional Loss - DGKH ENSG00000102780 CDS Human protein_coding chr13:42769039 chr13:42769041 nonsynonymous SNV 0.863 1 23 hm5C_associated_SNPs_59658 0 0 0 0 1 DGKH chr13:42769021 3'AG 42769021 Downstream 21bp
chr12 644344 644344 1 + G T LUSC 644342 + 644322 644362 41 CCTTCCACAGGGTACGGCAGCTGGAGAGAACTGGCCAAGGC CCTTCCACAGGGTACGGCAGCTTGAGAGAACTGGCCAAGGC < 41bp 0.869714641040171 0.598410650233362 0.7547892 0.31574333 prediction 0.542607981613617 Functional Loss - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:644342 chr12:644344 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_59659 0 0 0 0 1 B4GALNT3 chr12:644435 5'GT 644435 Upstream 92bp
chr19 50302915 50302915 1 + G T PRAD 50302913 + 50302893 50302933 41 GGGACGTCAGCGTGCGGCAGCGGGCGGCTGACCTCCTCTAC GGGACGTCAGCGTGCGGCAGCGTGCGGCTGACCTCCTCTAC < 41bp 0.771292264030535 0.4196459001349 0.9269043 0.8610051 prediction 0.54258452806107 Functional Loss - AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50302913 chr19:50302915 synonymous SNV . 0 23 hm5C_associated_SNPs_59660 0 0 1 0 1 AP2A1 chr19:50302886 3'AG 50302886 Downstream 30bp
chr16 814999 814999 1 + A T LUAD 814995 + 814975 815015 41 ACCTGCTCCCGAGGGGGGCTCCCGAGCGACAGCGGCTGCTG ACCTGCTCCCGAGGGGGGCTCCCGTGCGACAGCGGCTGCTG < 41bp 0.825571939186055 0.554286816278538 0.9048574 0.8860817 prediction 0.542570245815035 Functional Loss - MSLN ENSG00000102854 CDS Human protein_coding chr16:814995 chr16:814999 nonsynonymous SNV 0.022 1 25 hm5C_associated_SNPs_59663 0 0 0 0 2 MSLN chr16:814907 3'AG 814907 Downstream 93bp
chr16 814999 814999 1 + A T LUAD 814995 + 814975 815015 41 ACCTGCTCCCGAGGGGGGCTCCCGAGCGACAGCGGCTGCTG ACCTGCTCCCGAGGGGGGCTCCCGTGCGACAGCGGCTGCTG < 41bp 0.825571939186055 0.554286816278538 0.9048574 0.8860817 prediction 0.542570245815035 Functional Loss - MSLN ENSG00000102854 CDS Human protein_coding chr16:814995 chr16:814999 nonsynonymous SNV 0.022 1 25 hm5C_associated_SNPs_59663 0 0 0 0 2 MSLN chr16:815036 5'GT 815036 Upstream 38bp
chr16 47694709 47694709 1 + C T LGG 47694707 + 47694687 47694727 41 AATGGAAGGACAAACCCACCCACGAAATTCTTCAAAAACTG AATGGAAGGACAAACCCACCCATGAAATTCTTCAAAAACTG < 41bp 0.774063267800672 0.502784474240486 0.03515911 0.056148887 prediction 0.542557587120372 Functional Loss - PHKB ENSG00000102893 CDS Human protein_coding chr16:47694707 chr16:47694709 synonymous SNV . 0 23 hm5C_associated_SNPs_59664 0 0 1 0 1 PHKB chr16:47694730 5'GT 47694730 Upstream 22bp
chr19 42818673 42818673 1 + G T SKCM 42818670 + 42818650 42818690 41 GTGGCCAGCCGTGTACAAGGCAGGGGACAAGGTGAGGGCTG GTGGCCAGCCGTGTACAAGGCAGTGGACAAGGTGAGGGCTG < 41bp 0.910878014170765 0.639619379413942 0.8809546 0.39412928 prediction 0.542517269513644 Functional Loss - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42818670 chr19:42818673 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_59667 0 0 1 0 2 TMEM145 chr19:42818603 3'AG 42818603 Downstream 71bp
chr19 42818673 42818673 1 + G T SKCM 42818670 + 42818650 42818690 41 GTGGCCAGCCGTGTACAAGGCAGGGGACAAGGTGAGGGCTG GTGGCCAGCCGTGTACAAGGCAGTGGACAAGGTGAGGGCTG < 41bp 0.910878014170765 0.639619379413942 0.8809546 0.39412928 prediction 0.542517269513644 Functional Loss - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42818670 chr19:42818673 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_59667 0 0 1 0 2 TMEM145 chr19:42818680 5'GT 42818680 Upstream 8bp
chr1 26524879 26524879 1 + G T LUAD 26524876 + 26524856 26524896 41 CCCTCTTCATCTGCATCACCCAGGACGGCTGGGTGGACATC CCCTCTTCATCTGCATCACCCAGTACGGCTGGGTGGACATC < 41bp 0.771238182321711 0.374742030871466 0.398363 0.06643844 prediction 0.542476364643423 Functional Loss - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26524876 chr1:26524879 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_59672 0 0 0 0 2 CATSPER4 chr1:26524825 3'AG 26524825 Downstream 55bp
chr1 26524879 26524879 1 + G T LUAD 26524876 + 26524856 26524896 41 CCCTCTTCATCTGCATCACCCAGGACGGCTGGGTGGACATC CCCTCTTCATCTGCATCACCCAGTACGGCTGGGTGGACATC < 41bp 0.771238182321711 0.374742030871466 0.398363 0.06643844 prediction 0.542476364643423 Functional Loss - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26524876 chr1:26524879 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_59672 0 0 0 0 2 CATSPER4 chr1:26524910 5'GT 26524910 Upstream 32bp
chr10 114044383 114044383 1 + G T BLCA 114044381 + 114044361 114044401 41 GAAGTTCATCAGCTGGCCCTCGGAGGGCTGTGTTACAATGG GAAGTTCATCAGCTGGCCCTCGTAGGGCTGTGTTACAATGG < 41bp 0.771230416098215 0.423304325198736 0.92422444 0.7402567 prediction 0.54246083219643 Functional Loss - TECTB ENSG00000119913 CDS Human protein_coding chr10:114044381 chr10:114044383 nonsynonymous SNV 0.908 4 23 hm5C_associated_SNPs_59676 0 0 0 0 1 TECTB chr10:114044293 3'AG 114044293 Downstream 91bp
chr5 131606680 131606680 1 + G T UCEC 131606677 + 131606657 131606697 41 CAGAAGATGGCAGACCAAGCCTGGGATCTCCATATGGACAA CAGAAGATGGCAGACCAAGCCTGTGATCTCCATATGGACAA < 41bp 0.908311322655271 0.637084617078054 0.39601505 0.048375845 prediction 0.542453411154434 Functional Loss - PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131606677 chr5:131606680 stopgain 0.993 0 24 hm5C_associated_SNPs_59678 0 0 0 0 1 PDLIM4 chr5:131606608 3'AG 131606608 Downstream 73bp
chr16 19485563 19485563 1 + G T UCEC 19485560 + 19485540 19485580 41 TTCAGGCTTGTGGAGAGGTACGAGATGCCACGGCACGAAGT TTCAGGCTTGTGGAGAGGTACGATATGCCACGGCACGAAGT < 41bp 0.771223923630808 0.39267485243265 0.68238395 0.07714352 prediction 0.542447847261617 Functional Loss - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19485560 chr16:19485563 nonsynonymous SNV 0.971 0 24 hm5C_associated_SNPs_59679 0 0 0 0 1 TMC5 chr16:19485598 5'GT 19485598 Upstream 36bp
chr4 113333108 113333108 1 + C T SKCM 113333106 + 113333086 113333126 41 TTCTGCAGGTCGCCAAAGGTCTCCACAAGTTGCAGCCAGCC TTCTGCAGGTCGCCAAAGGTCTTCACAAGTTGCAGCCAGCC < 41bp 0.771222551910814 0.492049188400837 0.9436548 0.1714916 prediction 0.542445103821628 Functional Loss - ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113333106 chr4:113333108 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_59680 0 0 0 0 1 ALPK1 chr4:113333181 5'GT 113333181 Upstream 74bp
chr1 61848989 61848989 1 + G T UCEC 61848986 + 61848966 61849006 41 CCCCTTCACAGACCTCCTCCCTGGGAACGGCGTTCACACAG CCCCTTCACAGACCTCCTCCCTGTGAACGGCGTTCACACAG < 41bp 0.771218892359506 0.409690917115056 0.2699939 0.025360972 prediction 0.542437784719012 Functional Loss - NFIA ENSG00000162599 CDS Human protein_coding chr1:61848986 chr1:61848989 stopgain 0.999 1 24 hm5C_associated_SNPs_59681 0 0 0 0 2 NFIA chr1:61848909 3'AG 61848909 Downstream 81bp
chr1 61848989 61848989 1 + G T UCEC 61848986 + 61848966 61849006 41 CCCCTTCACAGACCTCCTCCCTGGGAACGGCGTTCACACAG CCCCTTCACAGACCTCCTCCCTGTGAACGGCGTTCACACAG < 41bp 0.771218892359506 0.409690917115056 0.2699939 0.025360972 prediction 0.542437784719012 Functional Loss - NFIA ENSG00000162599 CDS Human protein_coding chr1:61848986 chr1:61848989 stopgain 0.999 1 24 hm5C_associated_SNPs_59681 0 0 0 0 2 NFIA chr1:61849037 5'GT 61849037 Upstream 49bp
chr10 102242085 102242085 1 + A C SKCM 102242081 + 102242061 102242101 41 TGCCACGGCGTGTCTGGCAGCTGCACCACGCAGACCTGTTG TGCCACGGCGTGTCTGGCAGCTGCCCCACGCAGACCTGTTG < 41bp 0.771206543625078 0.371874730695206 0.2094638 0.12263724 prediction 0.542413087250157 Functional Loss - WNT8B ENSG00000075290 CDS Human protein_coding chr10:102242081 chr10:102242085 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_59682 0 0 0 0 1 WNT8B chr10:102242028 3'AG 102242028 Downstream 58bp
chr8 24349579 24349579 1 + G C LUAD 24349578 + 24349558 24349598 41 TCATGGGGAAATGTCCAACTCGTGAGGATCAGTGCTCTGAA TCATGGGGAAATGTCCAACTCCTGAGGATCAGTGCTCTGAA < 41bp 0.826236190190598 0.555043144344138 0.618119 0.25980145 prediction 0.54238609169292 Functional Loss - ADAM7 ENSG00000069206 CDS Human protein_coding chr8:24349578 chr8:24349579 nonsynonymous SNV 0.894 3 22 hm5C_associated_SNPs_59684 0 0 0 0 1 ADAM7 chr8:24349611 5'GT 24349611 Upstream 33bp
chr15 45427436 45427436 1 + A C STAD 45427432 + 45427412 45427452 41 GGGGACGTGGTGCTGCCCTTCCAGAGAAGCCGCTGGGACCC GGGGACGTGGTGCTGCCCTTCCAGCGAAGCCGCTGGGACCC < 41bp 0.771149859660358 0.37138931656881 0.8992172 0.6874453 prediction 0.542299719320715 Functional Loss - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45427432 chr15:45427436 synonymous SNV . 0 25 hm5C_associated_SNPs_59688 0 0 0 0 1 DUOX1 chr15:45427489 5'GT 45427489 Upstream 54bp
chr10 90699427 90699427 1 - C A UCEC 90699430 - 90699410 90699450 41 CGTGAGATTGTCCGGGACATCAAGGAGAAACTGTGTTATGT CGTGAGATTGTCCGGGACATCAATGAGAAACTGTGTTATGT < 41bp 0.771149795794512 0.38040618315684 0.8888551 0.2716313 prediction 0.542299591589024 Functional Loss - ACTA2 ENSG00000107796 CDS Human protein_coding chr10:90699430 chr10:90699427 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_59689 0 0 0 0 1 ACTA2 chr10:90699455 3'AG 90699455 Downstream 29bp
chr1 78481780 78481780 1 + G T LUAD 78481778 + 78481758 78481798 41 GTAAATGATATTGTGAAACCCGGAATGAGGAGAAGAATTAT GTAAATGATATTGTGAAACCCGTAATGAGGAGAAGAATTAT < 41bp 0.81341722477198 0.542273307700393 0.24835217 0.10834527 prediction 0.542287834143174 Functional Loss - DNAJB4 ENSG00000162616 CDS Human protein_coding chr1:78481778 chr1:78481780 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_59691 0 0 1 0 1 DNAJB4 chr1:78481698 3'AG 78481698 Downstream 83bp
chr22 20008711 20008711 1 + G T rs737986 20008708 + 20008688 20008728 41 CCGCTAGTGGCCCGGCCGGCCTGGGCTCGGGGGCTCCGGGC CCGCTAGTGGCCCGGCCGGCCTGTGCTCGGGGGCTCCGGGC < 41bp 0.876980556814805 0.60586434153519 0.73503006 0.115343004 prediction 0.542232430559229 Functional Loss - TANGO2 ENSG00000183597 UTR5 Human protein_coding chr22:20008708 chr22:20008711 . . 0 24 hm5C_associated_SNPs_59698 0 0 1 0 1 TANGO2 chr22:20008769 5'GT 20008769 Upstream 59bp
chr13 114174959 114174959 1 + C T COAD 114174957 + 114174937 114174977 41 TTGACTACAGCACCGTGCTCCTCGGCATGCTGGTGACGCAG TTGACTACAGCACCGTGCTCCTTGGCATGCTGGTGACGCAG < 41bp 0.77257165753314 0.501458459719257 0.17090142 0.107868075 prediction 0.542226395627766 Functional Loss - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114174957 chr13:114174959 synonymous SNV . 0 23 hm5C_associated_SNPs_59699 0 0 1 0 2 TMCO3 chr13:114174931 3'AG 114174931 Downstream 29bp
chr13 114174959 114174959 1 + C T COAD 114174957 + 114174937 114174977 41 TTGACTACAGCACCGTGCTCCTCGGCATGCTGGTGACGCAG TTGACTACAGCACCGTGCTCCTTGGCATGCTGGTGACGCAG < 41bp 0.77257165753314 0.501458459719257 0.17090142 0.107868075 prediction 0.542226395627766 Functional Loss - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114174957 chr13:114174959 synonymous SNV . 0 23 hm5C_associated_SNPs_59699 0 0 1 0 2 TMCO3 chr13:114175048 5'GT 114175048 Upstream 90bp
chr6 348244 348244 1 + C T SKCM 348242 + 348222 348262 41 ACGTGGGCTTCCAGAGACAGCTCCAGGAGTTTGAGAAGCAT ACGTGGGCTTCCAGAGACAGCTTCAGGAGTTTGAGAAGCAT < 41bp 0.771109709934535 0.485611421262664 0.43782306 0.049076676 prediction 0.542219419869071 Functional Loss - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348242 chr6:348244 synonymous SNV . 0 23 hm5C_associated_SNPs_59700 0 0 1 0 1 DUSP22 chr6:348274 5'GT 348274 Upstream 31bp
chr3 50254864 50254864 1 + A C UCEC 50254860 + 50254840 50254880 41 TTTGCAGGCTACCTGGGCTACTCCAGCGGCTTCTCTCTTAG TTTGCAGGCTACCTGGGCTACTCCCGCGGCTTCTCTCTTAG < 41bp 0.771104619674434 0.37538541454019 0.96455854 0.13196653 prediction 0.542209239348867 Functional Loss - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50254860 chr3:50254864 . 0.998 2 25 hm5C_associated_SNPs_59701 0 0 0 0 2 SLC38A3 chr3:50254847 3'AG 50254847 Downstream 18bp
chr3 50254864 50254864 1 + A C UCEC 50254860 + 50254840 50254880 41 TTTGCAGGCTACCTGGGCTACTCCAGCGGCTTCTCTCTTAG TTTGCAGGCTACCTGGGCTACTCCCGCGGCTTCTCTCTTAG < 41bp 0.771104619674434 0.37538541454019 0.96455854 0.13196653 prediction 0.542209239348867 Functional Loss - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50254860 chr3:50254864 . 0.998 2 25 hm5C_associated_SNPs_59701 0 0 0 0 2 SLC38A3 chr3:50254905 5'GT 50254905 Upstream 42bp
chr16 2079600 2079600 1 + G T ACC 2079597 + 2079577 2079617 41 CCCCAGGTGGTGCAAAGGATCAAGGCTGTGGAGGGGCAGAC CCCCAGGTGGTGCAAAGGATCAATGCTGTGGAGGGGCAGAC < 41bp 0.771100912943244 0.378196520028571 0.86936885 0.25434488 prediction 0.542201825886488 Functional Loss - SLC9A3R2 ENSG00000065054 CDS Human protein_coding chr16:2079597 chr16:2079600 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_59702 0 0 1 0 1 SLC9A3R2 chr16:2079583 3'AG 2079583 Downstream 18bp
chr2 113765493 113765493 1 + A C COAD 113765489 + 113765469 113765509 41 CACAGCCAGAGTGGCAGGAACTCCACCTTCGAGTCTGTGGC CACAGCCAGAGTGGCAGGAACTCCCCCTTCGAGTCTGTGGC < 41bp 0.771099882355654 0.343287227050884 0.91141427 0.17370322 prediction 0.542199764711308 Functional Loss - IL36A ENSG00000136694 CDS Human protein_coding chr2:113765489 chr2:113765493 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_59703 0 0 0 0 1 IL36A chr2:113765409 3'AG 113765409 Downstream 85bp
chr3 45533239 45533239 1 + G T UCEC 45533236 + 45533216 45533256 41 AACATCGCGTCTTTCACTGGCAAGGGAGGCCCCCCACTGGC AACATCGCGTCTTTCACTGGCAATGGAGGCCCCCCACTGGC < 41bp 0.771082583401929 0.367142537937568 0.9227145 0.28818715 prediction 0.542165166803859 Functional Loss - LARS2 ENSG00000011376 CDS Human protein_coding chr3:45533236 chr3:45533239 nonsynonymous SNV 0.854 1 24 hm5C_associated_SNPs_59705 0 0 1 0 1 LARS2 chr3:45533292 5'GT 45533292 Upstream 54bp
chr4 71468348 71468348 1 + G T KIRC 71468345 + 71468325 71468365 41 TTTATCTGTGATATAGCTCCCAGGAGTAGATTTTGCTGATC TTTATCTGTGATATAGCTCCCAGTAGTAGATTTTGCTGATC < 41bp 0.771071446261691 0.411505224987989 0.9088128 0.482923 prediction 0.542142892523382 Functional Loss - AMBN ENSG00000178522 CDS Human protein_coding chr4:71468345 chr4:71468348 nonsynonymous SNV 0.015 0 24 hm5C_associated_SNPs_59710 0 0 0 0 2 AMBN chr4:71468341 3'AG 71468341 Downstream 8bp
chr4 71468348 71468348 1 + G T KIRC 71468345 + 71468325 71468365 41 TTTATCTGTGATATAGCTCCCAGGAGTAGATTTTGCTGATC TTTATCTGTGATATAGCTCCCAGTAGTAGATTTTGCTGATC < 41bp 0.771071446261691 0.411505224987989 0.9088128 0.482923 prediction 0.542142892523382 Functional Loss - AMBN ENSG00000178522 CDS Human protein_coding chr4:71468345 chr4:71468348 nonsynonymous SNV 0.015 0 24 hm5C_associated_SNPs_59710 0 0 0 0 2 AMBN chr4:71468379 5'GT 71468379 Upstream 32bp
chr10 81904679 81904679 1 + G T SARC 81904676 + 81904656 81904696 41 ATGGCTTCTGAGCCCTGGAGCTGGAGCCCAGCAGTTGGAGG ATGGCTTCTGAGCCCTGGAGCTGTAGCCCAGCAGTTGGAGG < 41bp 0.899756641156214 0.628688404285002 0.31040043 0.24645385 prediction 0.542136473742425 Functional Loss - PLAC9 ENSG00000189129 CDS Human protein_coding chr10:81904676 chr10:81904679 nonsynonymous SNV 0.010 1 24 hm5C_associated_SNPs_59711 0 0 0 1 1 PLAC9 chr10:81904656 3'AG 81904656 Downstream 24bp
chr6 161135904 161135904 1 + G T LUAD 161135902 + 161135882 161135922 41 TCTGGACTGGAATGCCAGGCCTGGGACTCTCAGAGCCCACA TCTGGACTGGAATGCCAGGCCTTGGACTCTCAGAGCCCACA < 41bp 0.771059149409746 0.425875591561592 0.17651677 0.055204958 prediction 0.542118298819491 Functional Loss - PLG ENSG00000122194 CDS Human protein_coding chr6:161135902 chr6:161135904 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_59712 0 0 0 0 2 PLG chr6:161135826 3'AG 161135826 Downstream 79bp
chr6 161135904 161135904 1 + G T LUAD 161135902 + 161135882 161135922 41 TCTGGACTGGAATGCCAGGCCTGGGACTCTCAGAGCCCACA TCTGGACTGGAATGCCAGGCCTTGGACTCTCAGAGCCCACA < 41bp 0.771059149409746 0.425875591561592 0.17651677 0.055204958 prediction 0.542118298819491 Functional Loss - PLG ENSG00000122194 CDS Human protein_coding chr6:161135902 chr6:161135904 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_59712 0 0 0 0 2 PLG chr6:161135946 5'GT 161135946 Upstream 43bp
chr15 57836782 57836782 1 + G T SKCM 57836779 + 57836759 57836799 41 TCGCGGAGCTGGAGGACCGCCTGGAGAGTGAGGAGAGGTGA TCGCGGAGCTGGAGGACCGCCTGTAGAGTGAGGAGAGGTGA < 41bp 0.893194533331699 0.622135920397596 0.75910914 0.3793849 prediction 0.542117225868206 Functional Loss - CGNL1 ENSG00000128849 CDS Human protein_coding chr15:57836779 chr15:57836782 stopgain 0.984 0 24 hm5C_associated_SNPs_59713 0 0 1 0 1 CGNL1 chr15:57836795 5'GT 57836795 Upstream 14bp
chr10 88730307 88730307 1 + G T SKCM 88730305 + 88730285 88730325 41 CCAGGCCTCTGACACCTTCTCTGGGATTGGGAAAAAATTCG CCAGGCCTCTGACACCTTCTCTTGGATTGGGAAAAAATTCG < 41bp 0.771021942951642 0.484720128865823 0.8041104 0.1883035 prediction 0.542043885903284 Functional Loss - ADIRF ENSG00000148671 CDS Human protein_coding chr10:88730305 chr10:88730307 nonsynonymous SNV 0.017 3 23 hm5C_associated_SNPs_59715 0 0 0 0 1 ADIRF chr10:88730233 3'AG 88730233 Downstream 75bp
chr9 131475465 131475465 1 + G T LUAD 131475462 + 131475442 131475482 41 AGGCCAAGCACCAGCGTGGCCGAGGCGAGCTTGCCAGTGAG AGGCCAAGCACCAGCGTGGCCGATGCGAGCTTGCCAGTGAG < 41bp 0.771011521528603 0.370632579227185 0.6589793 0.122146994 prediction 0.542023043057206 Functional Loss - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131475462 chr9:131475465 nonsynonymous SNV 0.630 2 24 hm5C_associated_SNPs_59716 0 0 1 0 2 PKN3 chr9:131475477 5'GT 131475477 Upstream 13bp
chr9 131475465 131475465 1 + G T LUAD 131475462 + 131475442 131475482 41 AGGCCAAGCACCAGCGTGGCCGAGGCGAGCTTGCCAGTGAG AGGCCAAGCACCAGCGTGGCCGATGCGAGCTTGCCAGTGAG < 41bp 0.771011521528603 0.370632579227185 0.6589793 0.122146994 prediction 0.542023043057206 Functional Loss - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131475462 chr9:131475465 nonsynonymous SNV 0.630 2 24 hm5C_associated_SNPs_59716 0 0 1 0 2 PKN3 chr9:131475481 5'GT 131475481 Upstream 17bp
chr15 45965982 45965982 1 + G T UCEC 45965980 + 45965960 45966000 41 TCAGAAGATCATGTACTTATCAGAAGCCTACTTCAGGAAGG TCAGAAGATCATGTACTTATCATAAGCCTACTTCAGGAAGG < 41bp 0.869681123430095 0.598672202854234 0.91724753 0.4053275 prediction 0.542017841151722 Functional Loss - SQOR ENSG00000137767;ENSG00000260170 CDS Human other chr15:45965980 chr15:45965982 stopgain 0.985 1 23 hm5C_associated_SNPs_59717 0 0 0 0 1 SQOR chr15:45965999 5'GT 45965999 Upstream 18bp
chr8 145736245 145736245 1 + G T SARC 145736243 + 145736223 145736263 41 GGTCACCACAGTCACCTTCACTGGGATGATGCGCTGCAGCC GGTCACCACAGTCACCTTCACTTGGATGATGCGCTGCAGCC < 41bp 0.866056511686647 0.595056467577455 0.9205717 0.8487421 prediction 0.542000088218384 Functional Loss - MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145736243 chr8:145736245 nonsynonymous SNV 0.742 1 23 hm5C_associated_SNPs_59720 0 0 1 0 1 MFSD3 chr8:145736286 5'GT 145736286 Upstream 42bp
chr1 45806997 45806997 1 + G T PAAD 45806995 + 45806975 45807015 41 GAGCTGAGTGGGCTTGGGGACAGGAAGAGTTTGCTGAACCA GAGCTGAGTGGGCTTGGGGACATGAAGAGTTTGCTGAACCA < 41bp 0.867111446472715 0.596114482273749 0.35536236 0.26423585 prediction 0.541993928397932 Functional Loss - TOE1 ENSG00000132773 CDS Human protein_coding chr1:45806995 chr1:45806997 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_59721 0 0 1 0 2 TOE1 chr1:45806975 3'AG 45806975 Downstream 23bp
chr1 45806997 45806997 1 + G T PAAD 45806995 + 45806975 45807015 41 GAGCTGAGTGGGCTTGGGGACAGGAAGAGTTTGCTGAACCA GAGCTGAGTGGGCTTGGGGACATGAAGAGTTTGCTGAACCA < 41bp 0.867111446472715 0.596114482273749 0.35536236 0.26423585 prediction 0.541993928397932 Functional Loss - TOE1 ENSG00000132773 CDS Human protein_coding chr1:45806995 chr1:45806997 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_59721 0 0 1 0 2 TOE1 chr1:45807015 5'GT 45807015 Upstream 19bp
chr4 186263248 186263248 1 + A C COAD 186263244 + 186263224 186263264 41 CCAGAAGGCTCAGCGAGTTTCAGAATTTACACCGGAAACTC CCAGAAGGCTCAGCGAGTTTCAGACTTTACACCGGAAACTC < 41bp 0.91332554911392 0.642330866688129 0.28622365 0.3022167 prediction 0.541989364851583 Functional Loss - SNX25 ENSG00000109762 CDS Human protein_coding chr4:186263244 chr4:186263248 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_59722 0 0 0 0 1 SNX25 chr4:186263270 5'GT 186263270 Upstream 23bp
chr16 31374570 31374570 1 + G T LUAD 31374567 + 31374547 31374587 41 TTGGGGCGGCTCTGACAGTGCTGGGGGATGTGAATGGGGAC TTGGGGCGGCTCTGACAGTGCTGTGGGATGTGAATGGGGAC < 41bp 0.907933874562303 0.636940095607706 0.49985847 0.28192177 prediction 0.541987557909193 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31374567 chr16:31374570 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_59723 0 0 0 0 1 ITGAX chr16:31374486 3'AG 31374486 Downstream 85bp
chr3 10916719 10916719 1 + G T LUSC 10916717 + 10916697 10916737 41 ATACGAGGGGTCACGTTGCCCGGGGCCTCAGAGGGCATCAA ATACGAGGGGTCACGTTGCCCGTGGCCTCAGAGGGCATCAA < 41bp 0.87428585741912 0.603305134103864 0.88027126 0.14883304 prediction 0.541961446630512 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10916717 chr3:10916719 nonsynonymous SNV 0.559 5 23 hm5C_associated_SNPs_59725 0 0 1 0 2 SLC6A11 chr3:10916646 3'AG 10916646 Downstream 74bp
chr3 10916719 10916719 1 + G T LUSC 10916717 + 10916697 10916737 41 ATACGAGGGGTCACGTTGCCCGGGGCCTCAGAGGGCATCAA ATACGAGGGGTCACGTTGCCCGTGGCCTCAGAGGGCATCAA < 41bp 0.87428585741912 0.603305134103864 0.88027126 0.14883304 prediction 0.541961446630512 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10916717 chr3:10916719 nonsynonymous SNV 0.559 5 23 hm5C_associated_SNPs_59725 0 0 1 0 2 SLC6A11 chr3:10916780 5'GT 10916780 Upstream 62bp
chr19 11352177 11352177 1 + G T THYM 11352175 + 11352155 11352195 41 CCCTCACAGGCCACGTGCAGCGGCAGAGGCGGGAGATGGTG CCCTCACAGGCCACGTGCAGCGTCAGAGGCGGGAGATGGTG < 41bp 0.869639839257468 0.598665474092789 0.77001476 0.37226662 prediction 0.541948730329358 Functional Loss - ANGPTL8 ENSG00000130173 CDS Human protein_coding chr19:11352175 chr19:11352177 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_59727 0 0 1 0 2 ANGPTL8 chr19:11352121 3'AG 11352121 Downstream 57bp
chr19 11352177 11352177 1 + G T THYM 11352175 + 11352155 11352195 41 CCCTCACAGGCCACGTGCAGCGGCAGAGGCGGGAGATGGTG CCCTCACAGGCCACGTGCAGCGTCAGAGGCGGGAGATGGTG < 41bp 0.869639839257468 0.598665474092789 0.77001476 0.37226662 prediction 0.541948730329358 Functional Loss - ANGPTL8 ENSG00000130173 CDS Human protein_coding chr19:11352175 chr19:11352177 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_59727 0 0 1 0 2 ANGPTL8 chr19:11352230 5'GT 11352230 Upstream 54bp
chr16 68217182 68217182 1 + G T ESCA 68217180 + 68217160 68217200 41 AGTTCCTCCATATCATAACCCAGCAGTTACAGCTGCAGTGC AGTTCCTCCATATCATAACCCATCAGTTACAGCTGCAGTGC < 41bp 0.770968602257465 0.493979237428773 0.3608166 0.071671784 prediction 0.54193720451493 Functional Loss - NFATC3 ENSG00000072736 CDS Human protein_coding chr16:68217180 chr16:68217182 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_59729 0 0 1 0 2 NFATC3 chr16:68217143 3'AG 68217143 Downstream 40bp
chr16 68217182 68217182 1 + G T ESCA 68217180 + 68217160 68217200 41 AGTTCCTCCATATCATAACCCAGCAGTTACAGCTGCAGTGC AGTTCCTCCATATCATAACCCATCAGTTACAGCTGCAGTGC < 41bp 0.770968602257465 0.493979237428773 0.3608166 0.071671784 prediction 0.54193720451493 Functional Loss - NFATC3 ENSG00000072736 CDS Human protein_coding chr16:68217180 chr16:68217182 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_59729 0 0 1 0 2 NFATC3 chr16:68217269 5'GT 68217269 Upstream 88bp
chr16 58312454 58312454 1 + G T UCEC 58312452 + 58312432 58312472 41 TGGCCGAGTTCCGGGCACCACAGGTGATGACTTACGTCCGG TGGCCGAGTTCCGGGCACCACATGTGATGACTTACGTCCGG < 41bp 0.8811170526891 0.610148813449786 0.89787465 0.4168271 prediction 0.541936478478628 Functional Loss - CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58312452 chr16:58312454 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_59730 0 0 0 0 2 CCDC113 chr16:58312386 3'AG 58312386 Downstream 69bp
chr16 58312454 58312454 1 + G T UCEC 58312452 + 58312432 58312472 41 TGGCCGAGTTCCGGGCACCACAGGTGATGACTTACGTCCGG TGGCCGAGTTCCGGGCACCACATGTGATGACTTACGTCCGG < 41bp 0.8811170526891 0.610148813449786 0.89787465 0.4168271 prediction 0.541936478478628 Functional Loss - CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58312452 chr16:58312454 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_59730 0 0 0 0 2 CCDC113 chr16:58312541 5'GT 58312541 Upstream 88bp
chr12 247568 247568 1 - C A COAD 247570 - 247550 247590 41 CGCAGGGAGATCCGCCGTGGCAGGCGGCTCTCCAGAAGCGA CGCAGGGAGATCCGCCGTGGCATGCGGCTCTCCAGAAGCGA < 41bp 0.770961039020228 0.420853226082884 0.888899 0.40982047 prediction 0.541922078040455 Functional Loss - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:247570 chr12:247568 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_59734 0 0 0 0 1 IQSEC3 chr12:247618 3'AG 247618 Downstream 51bp
chrX 47101874 47101874 1 + G C BLCA 47101870 + 47101850 47101890 41 GTCCCCAAGAAAGGCAAGATCTCGGATCTATGTGTGGCTCT GTCCCCAAGAAAGGCAAGATCTCGCATCTATGTGTGGCTCT < 41bp 0.814659301011169 0.543702418826815 0.3333459 0.106250614 prediction 0.541913764368708 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47101870 chrX:47101874 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_59735 0 0 1 0 1 USP11 chrX:47101838 3'AG 47101838 Downstream 37bp
chr20 2841419 2841419 1 + G T LUAD 2841416 + 2841396 2841436 41 CTGCAAAGTGCACCCTCCTGCTGGACTGTGCTGTGCCAGGA CTGCAAAGTGCACCCTCCTGCTGTACTGTGCTGTGCCAGGA < 41bp 0.90107633442327 0.630119624868742 0.69536227 0.26722583 prediction 0.541913419109056 Functional Loss - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2841416 chr20:2841419 nonsynonymous SNV 0.970 4 24 hm5C_associated_SNPs_59736 0 0 0 1 2 VPS16 chr20:2841394 3'AG 2841394 Downstream 26bp
chr20 2841419 2841419 1 + G T LUAD 2841416 + 2841396 2841436 41 CTGCAAAGTGCACCCTCCTGCTGGACTGTGCTGTGCCAGGA CTGCAAAGTGCACCCTCCTGCTGTACTGTGCTGTGCCAGGA < 41bp 0.90107633442327 0.630119624868742 0.69536227 0.26722583 prediction 0.541913419109056 Functional Loss - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2841416 chr20:2841419 nonsynonymous SNV 0.970 4 24 hm5C_associated_SNPs_59736 0 0 0 1 2 VPS16 chr20:2841509 5'GT 2841509 Upstream 91bp
chr3 33906912 33906912 1 + G T UCEC 33906910 + 33906890 33906930 41 ACCACCCTATCCCACCTATCCAGGATATCCTGGGTAAGGCT ACCACCCTATCCCACCTATCCATGATATCCTGGGTAAGGCT < 41bp 0.862258958385622 0.591307823645554 0.39649045 0.036379278 prediction 0.541902269480136 Functional Loss - PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906910 chr3:33906912 stopgain 1.000 1 23 hm5C_associated_SNPs_59738 0 0 1 0 1 PDCD6IP chr3:33906922 5'GT 33906922 Upstream 11bp
chr19 39116734 39116734 1 + G T LUSC 39116731 + 39116711 39116751 41 TGCTGGAGACCTGCCATTTCCAGGCCTTCTGGGTAACTTCC TGCTGGAGACCTGCCATTTCCAGTCCTTCTGGGTAACTTCC < 41bp 0.770929195923161 0.372980955281327 0.9105625 0.63079643 prediction 0.541858391846322 Functional Loss - EIF3K ENSG00000178982 CDS Human protein_coding chr19:39116731 chr19:39116734 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_59741 0 0 1 0 2 EIF3K chr19:39116668 3'AG 39116668 Downstream 67bp
chr19 39116734 39116734 1 + G T LUSC 39116731 + 39116711 39116751 41 TGCTGGAGACCTGCCATTTCCAGGCCTTCTGGGTAACTTCC TGCTGGAGACCTGCCATTTCCAGTCCTTCTGGGTAACTTCC < 41bp 0.770929195923161 0.372980955281327 0.9105625 0.63079643 prediction 0.541858391846322 Functional Loss - EIF3K ENSG00000178982 CDS Human protein_coding chr19:39116731 chr19:39116734 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_59741 0 0 1 0 2 EIF3K chr19:39116742 5'GT 39116742 Upstream 9bp
chr22 46693310 46693310 1 + G C COAD 46693309 + 46693289 46693329 41 GCTCTCTCCATGGAAGGAGGCGGCGGCCGCGATGAGCCTTC GCTCTCTCCATGGAAGGAGGCCGCGGCCGCGATGAGCCTTC < 41bp 0.770903212843743 0.468630010564712 0.90074635 0.8311187 prediction 0.541806425687486 Functional Loss - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46693309 chr22:46693310 nonsynonymous SNV 0.080 0 22 hm5C_associated_SNPs_59745 0 0 1 0 1 GTSE1 chr22:46693277 3'AG 46693277 Downstream 34bp
chr3 41274909 41274909 1 + A T LIHC 41274905 + 41274885 41274925 41 CAGAACTGTCTTTGGACTCTCAGGAATCTTTCAGATGCTGC CAGAACTGTCTTTGGACTCTCAGGTATCTTTCAGATGCTGC < 41bp 0.770889603137971 0.464791378257975 0.40641546 0.39763916 prediction 0.541779206275942 Functional Loss - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41274905 chr3:41274909 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_59747 0 0 1 0 2 CTNNB1 chr3:41274832 3'AG 41274832 Downstream 78bp
chr3 41274909 41274909 1 + A T LIHC 41274905 + 41274885 41274925 41 CAGAACTGTCTTTGGACTCTCAGGAATCTTTCAGATGCTGC CAGAACTGTCTTTGGACTCTCAGGTATCTTTCAGATGCTGC < 41bp 0.770889603137971 0.464791378257975 0.40641546 0.39763916 prediction 0.541779206275942 Functional Loss - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41274905 chr3:41274909 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_59747 0 0 1 0 2 CTNNB1 chr3:41274935 5'GT 41274935 Upstream 27bp
chr12 56362617 56362617 1 + T C STAD 56362616 + 56362596 56362636 41 TCTGCCATTCTCATCGGGTCCTCCACCGAGACCTTAAACCT TCTGCCATTCTCATCGGGTCCCCCACCGAGACCTTAAACCT < 41bp 0.77088770207528 0.497626048940173 0.76929367 0.016547292 prediction 0.541775404150559 Functional Loss - CDK2 ENSG00000123374 CDS Human protein_coding chr12:56362616 chr12:56362617 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_59748 0 0 1 0 1 CDK2 chr12:56362562 3'AG 56362562 Downstream 56bp
chr14 102916036 102916036 1 + C T UCEC 102916034 + 102916014 102916054 41 ACGATAATCCATGCCACTCACTCGGTGGCCACAGCAGCCCA ACGATAATCCATGCCACTCACTTGGTGGCCACAGCAGCCCA < 41bp 0.785008931019119 0.514142155321135 0.097949415 0.15768212 prediction 0.541733551395969 Functional Loss - TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102916034 chr14:102916036 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_59750 0 0 0 0 1 TECPR2 chr14:102915966 3'AG 102915966 Downstream 71bp
chr19 41826288 41826288 1 + C T STAD 41826286 + 41826266 41826306 41 TCGGAGGCCTGGGTTCCCGACTCGGAGGAGAGGCTGATCCT TCGGAGGCCTGGGTTCCCGACTTGGAGGAGAGGCTGATCCT < 41bp 0.770865437911424 0.49656825724457 0.33837914 0.30583775 prediction 0.541730875822848 Functional Loss - CCDC97 ENSG00000142039 CDS Human protein_coding chr19:41826286 chr19:41826288 nonsynonymous SNV 0.912 1 23 hm5C_associated_SNPs_59751 0 0 1 0 2 CCDC97 chr19:41826246 3'AG 41826246 Downstream 43bp
chr19 41826288 41826288 1 + C T STAD 41826286 + 41826266 41826306 41 TCGGAGGCCTGGGTTCCCGACTCGGAGGAGAGGCTGATCCT TCGGAGGCCTGGGTTCCCGACTTGGAGGAGAGGCTGATCCT < 41bp 0.770865437911424 0.49656825724457 0.33837914 0.30583775 prediction 0.541730875822848 Functional Loss - CCDC97 ENSG00000142039 CDS Human protein_coding chr19:41826286 chr19:41826288 nonsynonymous SNV 0.912 1 23 hm5C_associated_SNPs_59751 0 0 1 0 2 CCDC97 chr19:41826375 5'GT 41826375 Upstream 88bp
chr16 68573295 68573295 1 + G C rs1170443 68573291 + 68573271 68573311 41 AGATCAGAATTGGAGATAACCGAGGCTTCGGCGGGGGCGGG AGATCAGAATTGGAGATAACCGAGCCTTCGGCGGGGGCGGG < 41bp 0.774178601925344 0.503320097550492 0.90054655 0.8794195 prediction 0.541717008749705 Functional Loss - ZFP90 ENSG00000184939 UTR5 Human protein_coding chr16:68573291 chr16:68573295 . . 0 25 hm5C_associated_SNPs_59753 0 0 1 0 2 ZFP90 chr16:68573372 5'GT 68573372 Upstream 78bp
chr16 68573295 68573295 1 + G C rs1170443 68573291 + 68573271 68573311 41 AGATCAGAATTGGAGATAACCGAGGCTTCGGCGGGGGCGGG AGATCAGAATTGGAGATAACCGAGCCTTCGGCGGGGGCGGG < 41bp 0.774178601925344 0.503320097550492 0.90054655 0.8794195 prediction 0.541717008749705 Functional Loss - ZFP90 ENSG00000184939 UTR5 Human protein_coding chr16:68573291 chr16:68573295 . . 0 25 hm5C_associated_SNPs_59753 0 0 1 0 2 ZFP90 chr16:68573382 5'GT 68573382 Upstream 88bp
chr9 133932444 133932444 1 + G T LUAD 133932442 + 133932422 133932462 41 GTTCTGTGAATCCTGTGCTCCGGGATACAAGAGGGAGATGC GTTCTGTGAATCCTGTGCTCCGTGATACAAGAGGGAGATGC < 41bp 0.770849390763603 0.430898639761918 0.8722382 0.3173759 prediction 0.541698781527206 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133932442 chr9:133932444 stopgain 0.988 1 23 hm5C_associated_SNPs_59756 0 0 0 0 1 LAMC3 chr9:133932534 5'GT 133932534 Upstream 91bp
chr20 30381768 30381768 1 + C T SKCM 30381766 + 30381746 30381786 41 ATGCCCTTTCTCGTTTGATTCTCGAGACAAAGAACGTCAGT ATGCCCTTTCTCGTTTGATTCTTGAGACAAAGAACGTCAGT < 41bp 0.809255310197079 0.538419859096367 0.63027656 0.17071185 prediction 0.541670902201425 Functional Loss - TPX2 ENSG00000088325 CDS Human protein_coding chr20:30381766 chr20:30381768 stopgain 0.998 1 23 hm5C_associated_SNPs_59760 0 0 1 0 1 TPX2 chr20:30381827 5'GT 30381827 Upstream 60bp
chr3 124449455 124449455 1 + G T LGG 124449452 + 124449432 124449472 41 CGATCTGCGGGGCATCGTGTCTCGACCGCGTCTTCTGAGTC CGATCTGCGGGGCATCGTGTCTCTACCGCGTCTTCTGAGTC < 41bp 0.770819555786165 0.39688238020448 0.37690824 0.9125051 prediction 0.54163911157233 Functional Loss - UMPS ENSG00000114491 CDS Human protein_coding chr3:124449452 chr3:124449455 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_59762 0 0 1 1 1 UMPS chr3:124449474 5'GT 124449474 Upstream 20bp
chrX 149642015 149642015 1 + G T LUSC 149642012 + 149641992 149642032 41 CGGTGAAGCCCCAGCATCAACACGGGAACTCTTTCACTAGC CGGTGAAGCCCCAGCATCAACACTGGAACTCTTTCACTAGC < 41bp 0.770817466843865 0.373662712692274 0.7567868 0.10170889 prediction 0.541634933687731 Functional Loss - MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149642012 chrX:149642015 nonsynonymous SNV 0.317 0 24 hm5C_associated_SNPs_59763 0 0 1 0 2 MAMLD1 chrX:149641952 3'AG 149641952 Downstream 64bp
chrX 149642015 149642015 1 + G T LUSC 149642012 + 149641992 149642032 41 CGGTGAAGCCCCAGCATCAACACGGGAACTCTTTCACTAGC CGGTGAAGCCCCAGCATCAACACTGGAACTCTTTCACTAGC < 41bp 0.770817466843865 0.373662712692274 0.7567868 0.10170889 prediction 0.541634933687731 Functional Loss - MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149642012 chrX:149642015 nonsynonymous SNV 0.317 0 24 hm5C_associated_SNPs_59763 0 0 1 0 2 MAMLD1 chrX:149642074 5'GT 149642074 Upstream 60bp
chr12 27841309 27841309 1 + G T UCEC 27841307 + 27841287 27841327 41 GCTGCGCTCCGTGGACTTGGCAGAATATGCGCCCAATCTCA GCTGCGCTCCGTGGACTTGGCATAATATGCGCCCAATCTCA < 41bp 0.770798063742213 0.43629725308694 0.3389326 0.08354059 prediction 0.541596127484425 Functional Loss - PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27841307 chr12:27841309 stopgain 0.996 0 23 hm5C_associated_SNPs_59767 0 0 1 0 2 PPFIBP1 chr12:27841231 3'AG 27841231 Downstream 79bp
chr12 27841309 27841309 1 + G T UCEC 27841307 + 27841287 27841327 41 GCTGCGCTCCGTGGACTTGGCAGAATATGCGCCCAATCTCA GCTGCGCTCCGTGGACTTGGCATAATATGCGCCCAATCTCA < 41bp 0.770798063742213 0.43629725308694 0.3389326 0.08354059 prediction 0.541596127484425 Functional Loss - PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27841307 chr12:27841309 stopgain 0.996 0 23 hm5C_associated_SNPs_59767 0 0 1 0 2 PPFIBP1 chr12:27841356 5'GT 27841356 Upstream 48bp
chr9 132988695 132988695 1 + G T LUAD 132988692 + 132988672 132988712 41 CCGACGGGAAGCTGACCCTGCAGGAGTTCCAGGAGGGTTCC CCGACGGGAAGCTGACCCTGCAGTAGTTCCAGGAGGGTTCC < 41bp 0.907221449719853 0.636433059931741 0.8601017 0.40792817 prediction 0.541576779576225 Functional Loss - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132988692 chr9:132988695 stopgain 1.000 1 24 hm5C_associated_SNPs_59769 0 0 1 0 2 NCS1 chr9:132988668 3'AG 132988668 Downstream 28bp
chr9 132988695 132988695 1 + G T LUAD 132988692 + 132988672 132988712 41 CCGACGGGAAGCTGACCCTGCAGGAGTTCCAGGAGGGTTCC CCGACGGGAAGCTGACCCTGCAGTAGTTCCAGGAGGGTTCC < 41bp 0.907221449719853 0.636433059931741 0.8601017 0.40792817 prediction 0.541576779576225 Functional Loss - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132988692 chr9:132988695 stopgain 1.000 1 24 hm5C_associated_SNPs_59769 0 0 1 0 2 NCS1 chr9:132988783 5'GT 132988783 Upstream 89bp
chr12 97301074 97301074 1 + G T rs531209713 97301072 + 97301052 97301092 41 GGCCCCCTGTTGTGTTGCTGCGGAGAGGTGAGGTTCCGGAG GGCCCCCTGTTGTGTTGCTGCGTAGAGGTGAGGTTCCGGAG < 41bp 0.848913954347289 0.578131693347059 0.7851049 0.37796524 prediction 0.54156452200046 Functional Loss - NEDD1 ENSG00000139350 UTR5 Human protein_coding chr12:97301072 chr12:97301074 . . 0 23 hm5C_associated_SNPs_59771 0 0 1 0 1 NEDD1 chr12:97301078 5'GT 97301078 Upstream 5bp
chr4 184606267 184606267 1 + G T LUAD 184606264 + 184606244 184606284 41 TCTGAAAGATGACCAGAAGTCTCGGATAGAAAAGAACCTCA TCTGAAAGATGACCAGAAGTCTCTGATAGAAAAGAACCTCA < 41bp 0.770781671601413 0.4103795891226 0.11440769 0.04993567 prediction 0.541563343202825 Functional Loss - TRAPPC11 ENSG00000168538 CDS Human protein_coding chr4:184606264 chr4:184606267 nonsynonymous SNV 0.983 2 24 hm5C_associated_SNPs_59773 0 0 1 0 2 TRAPPC11 chr4:184606237 3'AG 184606237 Downstream 31bp
chr4 184606267 184606267 1 + G T LUAD 184606264 + 184606244 184606284 41 TCTGAAAGATGACCAGAAGTCTCGGATAGAAAAGAACCTCA TCTGAAAGATGACCAGAAGTCTCTGATAGAAAAGAACCTCA < 41bp 0.770781671601413 0.4103795891226 0.11440769 0.04993567 prediction 0.541563343202825 Functional Loss - TRAPPC11 ENSG00000168538 CDS Human protein_coding chr4:184606264 chr4:184606267 nonsynonymous SNV 0.983 2 24 hm5C_associated_SNPs_59773 0 0 1 0 2 TRAPPC11 chr4:184606298 5'GT 184606298 Upstream 32bp
chr12 48174054 48174054 1 + G T UCEC 48174052 + 48174032 48174072 41 TTTGCTGACATCAGCATCCTCAGCGATTTCTGACCCAGGGG TTTGCTGACATCAGCATCCTCATCGATTTCTGACCCAGGGG < 41bp 0.770776302367673 0.443065117390999 0.80548835 0.27079087 prediction 0.541552604735347 Functional Loss - SLC48A1 ENSG00000211584 CDS Human protein_coding chr12:48174052 chr12:48174054 nonsynonymous SNV 0.985 1 23 hm5C_associated_SNPs_59776 0 0 1 0 1 SLC48A1 chr12:48174072 5'GT 48174072 Upstream 19bp
chr1 196757479 196757479 1 + A T LAML 196757475 + 196757455 196757495 41 AACAGCAGATGGAAATTCTTCAGGATCAATTACATGTTTGC AACAGCAGATGGAAATTCTTCAGGTTCAATTACATGTTTGC < 41bp 0.8013375187041 0.530578424561431 0.6763364 0.7482312 prediction 0.541518188285339 Functional Loss - CFHR3 ENSG00000116785 CDS Human protein_coding chr1:196757475 chr1:196757479 synonymous SNV 0.149 0 25 hm5C_associated_SNPs_59781 0 0 0 0 1 CFHR3 chr1:196757528 5'GT 196757528 Upstream 50bp
chr17 28770866 28770866 1 + G T UCEC 28770864 + 28770844 28770884 41 GTTCTAGATGCCACAGATGGCAGGGGTATATTAAATGCCAC GTTCTAGATGCCACAGATGGCATGGGTATATTAAATGCCAC < 41bp 0.770757867396179 0.430135526088224 0.88319534 0.29986563 prediction 0.541515734792358 Functional Loss - CPD ENSG00000108582 CDS Human protein_coding chr17:28770864 chr17:28770866 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_59783 0 0 1 0 1 CPD chr17:28770820 3'AG 28770820 Downstream 47bp
chr21 37717283 37717283 1 + G T UCEC 37717281 + 37717261 37717301 41 TATGGGATAATGATGTATCACAGAAATAGACTCATCAAAGC TATGGGATAATGATGTATCACATAAATAGACTCATCAAAGC < 41bp 0.770724139773148 0.464844255475129 0.06699103 0.02214104 prediction 0.541448279546296 Functional Loss - MORC3 ENSG00000159256 CDS Human protein_coding chr21:37717281 chr21:37717283 nonsynonymous SNV 0.975 2 23 hm5C_associated_SNPs_59786 0 0 1 0 1 MORC3 chr21:37717210 3'AG 37717210 Downstream 74bp
chr9 95797636 95797636 1 + G T LUAD 95797634 + 95797614 95797654 41 CTGCAGGACGGCCGGCTGCCCCGCACCATCCCTCTCCCCAG CTGCAGGACGGCCGGCTGCCCCTCACCATCCCTCTCCCCAG < 41bp 0.770710571869885 0.433492933441312 0.06619233 0.023737788 prediction 0.541421143739769 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95797634 chr9:95797636 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_59789 0 0 0 0 1 FGD3 chr9:95797620 3'AG 95797620 Downstream 17bp
chr2 29160860 29160860 1 + G T LUSC 29160857 + 29160837 29160877 41 GTTCATGCATCATACCTGTCCACGGTGAGTCTTTTCAGCTT GTTCATGCATCATACCTGTCCACTGTGAGTCTTTTCAGCTT < 41bp 0.770708680043477 0.396855731566634 0.27522364 0.035226226 prediction 0.541417360086954 Functional Loss - WDR43 ENSG00000163811 CDS Human protein_coding chr2:29160857 chr2:29160860 synonymous SNV . 0 24 hm5C_associated_SNPs_59790 0 0 1 0 2 WDR43 chr2:29160797 3'AG 29160797 Downstream 64bp
chr2 29160860 29160860 1 + G T LUSC 29160857 + 29160837 29160877 41 GTTCATGCATCATACCTGTCCACGGTGAGTCTTTTCAGCTT GTTCATGCATCATACCTGTCCACTGTGAGTCTTTTCAGCTT < 41bp 0.770708680043477 0.396855731566634 0.27522364 0.035226226 prediction 0.541417360086954 Functional Loss - WDR43 ENSG00000163811 CDS Human protein_coding chr2:29160857 chr2:29160860 synonymous SNV . 0 24 hm5C_associated_SNPs_59790 0 0 1 0 2 WDR43 chr2:29160860 5'GT 29160860 Upstream 1bp
chr12 75874770 75874770 1 + G T SARC 75874768 + 75874748 75874788 41 AATGAAGATTTCATCAAAGACTGCGTTCGAATCCATAACAA AATGAAGATTTCATCAAAGACTTCGTTCGAATCCATAACAA < 41bp 0.770692053166655 0.459956392023146 0.06023425 0.013465196 prediction 0.54138410633331 Functional Loss - GLIPR1 ENSG00000139278 CDS Human protein_coding chr12:75874768 chr12:75874770 nonsynonymous SNV 0.285 2 23 hm5C_associated_SNPs_59793 0 0 0 0 1 GLIPR1 chr12:75874834 5'GT 75874834 Upstream 65bp
chr14 100996232 100996232 1 + G T KIRC 100996229 + 100996209 100996249 41 TGACGGGCAGCGCCGATGGCCGGGTCCTGATGTACAGCTTC TGACGGGCAGCGCCGATGGCCGGTTCCTGATGTACAGCTTC < 41bp 0.770687516473833 0.385972565868942 0.7550897 0.17516702 prediction 0.541375032947665 Functional Loss - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100996229 chr14:100996232 nonsynonymous SNV 0.952 1 24 hm5C_associated_SNPs_59794 0 0 1 0 1 WDR25 chr14:100996157 3'AG 100996157 Downstream 76bp
chr14 100996231 100996231 1 + G T LUAD 100996229 + 100996209 100996249 41 TGACGGGCAGCGCCGATGGCCGGGTCCTGATGTACAGCTTC TGACGGGCAGCGCCGATGGCCGTGTCCTGATGTACAGCTTC < 41bp 0.770687516473833 0.440747459454262 0.7550897 0.24845383 prediction 0.541375032947665 Functional Loss - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100996229 chr14:100996231 synonymous SNV . 0 23 hm5C_associated_SNPs_59795 0 0 1 0 1 WDR25 chr14:100996157 3'AG 100996157 Downstream 75bp
chr16 14989410 14989410 1 + G T ESCA 14989407 + 14989387 14989427 41 TGCAGTTGACAAGCCGGCTACAGGGAGTCCGCGCGCTCGGC TGCAGTTGACAAGCCGGCTACAGTGAGTCCGCGCGCTCGGC < 41bp 0.770666873172554 0.379082997864224 0.90245605 0.4442859 prediction 0.541333746345109 Functional Loss - NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14989407 chr16:14989410 stopgain 0.433 1 24 hm5C_associated_SNPs_59799 0 0 1 0 1 NOMO1 chr16:14989371 3'AG 14989371 Downstream 40bp
chr5 50685526 50685526 1 + C T SKCM 50685524 + 50685504 50685544 41 CAGCCCTGCGGCCCCACGTCCACAAGCAGCCGGAGAAGACC CAGCCCTGCGGCCCCACGTCCATAAGCAGCCGGAGAAGACC < 41bp 0.770643099200868 0.499359253763035 0.13253757 0.19183436 prediction 0.541286198401737 Functional Loss - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50685524 chr5:50685526 synonymous SNV . 0 23 hm5C_associated_SNPs_59801 0 0 0 0 1 ISL1 chr5:50685480 3'AG 50685480 Downstream 47bp
chr15 72956803 72956803 1 + G T UCEC 72956801 + 72956781 72956821 41 ACCTAGAAGCTGCCAGCCAGCAGAACCAACAGCTAGAGACC ACCTAGAAGCTGCCAGCCAGCATAACCAACAGCTAGAGACC < 41bp 0.770640114788548 0.413122468215427 0.5772105 0.13715899 prediction 0.541280229577096 Functional Loss - GOLGA6B ENSG00000215186 CDS Human protein_coding chr15:72956801 chr15:72956803 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_59802 0 0 0 0 2 GOLGA6B chr15:72956777 3'AG 72956777 Downstream 27bp
chr15 72956803 72956803 1 + G T UCEC 72956801 + 72956781 72956821 41 ACCTAGAAGCTGCCAGCCAGCAGAACCAACAGCTAGAGACC ACCTAGAAGCTGCCAGCCAGCATAACCAACAGCTAGAGACC < 41bp 0.770640114788548 0.413122468215427 0.5772105 0.13715899 prediction 0.541280229577096 Functional Loss - GOLGA6B ENSG00000215186 CDS Human protein_coding chr15:72956801 chr15:72956803 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_59802 0 0 0 0 2 GOLGA6B chr15:72956852 5'GT 72956852 Upstream 50bp
chr3 14172381 14172381 1 + C T rs34099410 14172379 + 14172359 14172399 41 GGCTCTCGCTTGTGGTGTCTCCCGACAGCATCCACAGTGTG GGCTCTCGCTTGTGGTGTCTCCTGACAGCATCCACAGTGTG < 41bp 0.773966222103046 0.503331252870221 0.15574938 0.16790521 prediction 0.54126993846565 Functional Loss - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14172379 chr3:14172381 synonymous SNV . 0 23 hm5C_associated_SNPs_59804 4 0 1 0 1 TMEM43 chr3:14172456 5'GT 14172456 Upstream 76bp
chr12 56112932 56112932 1 + G T STAD 56112930 + 56112910 56112950 41 ACCATGAGGTGAAGACCCTACAGGTCCAGGCTGCCCAATTT ACCATGAGGTGAAGACCCTACATGTCCAGGCTGCCCAATTT < 41bp 0.770628911508632 0.442914079643731 0.21446994 0.03622222 prediction 0.541257823017264 Functional Loss - BLOC1S1 ENSG00000135441;ENSG00000258311 CDS Human other chr12:56112930 chr12:56112932 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_59805 0 0 1 0 1 BLOC1S1 chr12:56113007 5'GT 56113007 Upstream 76bp
chr22 29837551 29837551 1 + G C ACC 29837550 + 29837530 29837570 41 GTGGATATGACCTTGGATGCCGACACAGCCAACAACTTCCT GTGGATATGACCTTGGATGCCCACACAGCCAACAACTTCCT < 41bp 0.770603243025169 0.466026170741531 0.010408133 0.0070828497 prediction 0.541206486050338 Functional Loss - RFPL1 ENSG00000128250 CDS Human protein_coding chr22:29837550 chr22:29837551 nonsynonymous SNV 0.025 3 22 hm5C_associated_SNPs_59812 0 0 0 0 1 RFPL1 chr22:29837531 3'AG 29837531 Downstream 21bp
chr7 12665407 12665407 1 + G T UCEC 12665404 + 12665384 12665424 41 TAGGTAAAGATGCTAATCCCCAAGAGAGGAAGGCTGCAATG TAGGTAAAGATGCTAATCCCCAATAGAGGAAGGCTGCAATG < 41bp 0.770583201559392 0.391280209664988 0.41118792 0.021646291 prediction 0.541166403118784 Functional Loss - SCIN ENSG00000006747 CDS Human protein_coding chr7:12665404 chr7:12665407 stopgain 1.000 1 24 hm5C_associated_SNPs_59815 0 0 1 2 2 SCIN chr7:12665387 3'AG 12665387 Downstream 21bp
chr7 12665407 12665407 1 + G T UCEC 12665404 + 12665384 12665424 41 TAGGTAAAGATGCTAATCCCCAAGAGAGGAAGGCTGCAATG TAGGTAAAGATGCTAATCCCCAATAGAGGAAGGCTGCAATG < 41bp 0.770583201559392 0.391280209664988 0.41118792 0.021646291 prediction 0.541166403118784 Functional Loss - SCIN ENSG00000006747 CDS Human protein_coding chr7:12665404 chr7:12665407 stopgain 1.000 1 24 hm5C_associated_SNPs_59815 0 0 1 2 2 SCIN chr7:12665475 5'GT 12665475 Upstream 69bp
chrX 70517735 70517735 1 + G T UCEC 70517732 + 70517712 70517752 41 AAGAAGAGATGCGGCGGCAGCAAGAAGAAATGATGCGGCGA AAGAAGAGATGCGGCGGCAGCAATAAGAAATGATGCGGCGA < 41bp 0.903420734322903 0.632846144992872 0.8913538 0.69623965 prediction 0.541149178660061 Functional Loss - NONO ENSG00000147140 CDS Human protein_coding chrX:70517732 chrX:70517735 stopgain 0.952 1 24 hm5C_associated_SNPs_59816 0 0 1 0 2 NONO chrX:70517686 3'AG 70517686 Downstream 50bp
chrX 70517735 70517735 1 + G T UCEC 70517732 + 70517712 70517752 41 AAGAAGAGATGCGGCGGCAGCAAGAAGAAATGATGCGGCGA AAGAAGAGATGCGGCGGCAGCAATAAGAAATGATGCGGCGA < 41bp 0.903420734322903 0.632846144992872 0.8913538 0.69623965 prediction 0.541149178660061 Functional Loss - NONO ENSG00000147140 CDS Human protein_coding chrX:70517732 chrX:70517735 stopgain 0.952 1 24 hm5C_associated_SNPs_59816 0 0 1 0 2 NONO chrX:70517788 5'GT 70517788 Upstream 54bp
chr17 54230891 54230891 1 + G T LUSC 54230888 + 54230868 54230908 41 CTCATGGAGGCGTCTCTAACCAGGGTAGGAAAACAATAGTT CTCATGGAGGCGTCTCTAACCAGTGTAGGAAAACAATAGTT < 41bp 0.770570205556481 0.418819536859839 0.91066253 0.8610203 prediction 0.541140411112963 Functional Loss - ANKFN1 ENSG00000153930 CDS Human protein_coding chr17:54230888 chr17:54230891 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_59818 0 0 0 0 1 ANKFN1 chr17:54230891 3'AG 54230891 Downstream 1bp
chr2 66775122 66775122 1 + G T ESCA 66775119 + 66775099 66775139 41 AAAAAGCAGTTGGCACAAGACACGGGACTCACCATCCTTCA AAAAAGCAGTTGGCACAAGACACTGGACTCACCATCCTTCA < 41bp 0.77056873219673 0.402594531715386 0.31060582 0.15942666 prediction 0.541137464393459 Functional Loss - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66775119 chr2:66775122 synonymous SNV . 0 24 hm5C_associated_SNPs_59820 0 0 0 1 2 MEIS1 chr2:66775075 3'AG 66775075 Downstream 48bp
chr2 66775122 66775122 1 + G T ESCA 66775119 + 66775099 66775139 41 AAAAAGCAGTTGGCACAAGACACGGGACTCACCATCCTTCA AAAAAGCAGTTGGCACAAGACACTGGACTCACCATCCTTCA < 41bp 0.77056873219673 0.402594531715386 0.31060582 0.15942666 prediction 0.541137464393459 Functional Loss - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66775119 chr2:66775122 synonymous SNV . 0 24 hm5C_associated_SNPs_59820 0 0 0 1 2 MEIS1 chr2:66775151 5'GT 66775151 Upstream 30bp
chr5 176815174 176815174 1 + C T GBM 176815172 + 176815152 176815192 41 AAGATCATCACAGAGCCCTTCACGAAGCTCATCATCCAGGT AAGATCATCACAGAGCCCTTCATGAAGCTCATCATCCAGGT < 41bp 0.772292758294449 0.501736162838755 0.78765106 0.3871464 prediction 0.541113190911388 Functional Loss - SLC34A1 ENSG00000131183 CDS Human protein_coding chr5:176815172 chr5:176815174 nonsynonymous SNV 0.842 4 23 hm5C_associated_SNPs_59822 0 0 0 0 1 SLC34A1 chr5:176815190 5'GT 176815190 Upstream 17bp
chrX 595519 595519 1 + G T LUAD 595516 + 595496 595536 41 TACCCCGACGCCTTCATGCGCGAGGAGCTCAGCCAGCGCCT TACCCCGACGCCTTCATGCGCGATGAGCTCAGCCAGCGCCT < 41bp 0.77054832135483 0.368618616967177 0.90997297 0.21995586 prediction 0.54109664270966 Functional Loss - SHOX ENSG00000185960 CDS Human protein_coding chrX:595516 chrX:595519 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_59823 0 0 0 0 1 SHOX chrX:595561 5'GT 595561 Upstream 43bp
chr20 2591193 2591193 1 + G T LUSC 2591191 + 2591171 2591211 41 GACGCATCTTTGCACTCTTCCTGGGGAACCTCTACACATTT GACGCATCTTTGCACTCTTCCTTGGGAACCTCTACACATTT < 41bp 0.770543583276995 0.42339156653006 0.39730027 0.026890218 prediction 0.54108716655399 Functional Loss - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2591191 chr20:2591193 synonymous SNV . 0 23 hm5C_associated_SNPs_59826 0 0 0 0 1 TMC2 chr20:2591244 5'GT 2591244 Upstream 52bp
chr15 22382661 22382661 1 + G T LUAD 22382659 + 22382639 22382679 41 CAGCCCCCCTCTATTTATTTCTGGGCAACTTGGCCTTCCTG CAGCCCCCCTCTATTTATTTCTTGGCAACTTGGCCTTCCTG < 41bp 0.77051003685957 0.423283609037596 0.75605655 0.27352732 prediction 0.54102007371914 Functional Loss - OR4N4 ENSG00000183706 CDS Human protein_coding chr15:22382659 chr15:22382661 synonymous SNV . 0 23 hm5C_associated_SNPs_59831 0 0 0 0 1 OR4N4 chr15:22382742 5'GT 22382742 Upstream 82bp
chr15 22382662 22382662 1 + G T LUSC 22382659 + 22382639 22382679 41 CAGCCCCCCTCTATTTATTTCTGGGCAACTTGGCCTTCCTG CAGCCCCCCTCTATTTATTTCTGTGCAACTTGGCCTTCCTG < 41bp 0.77051003685957 0.373447741546159 0.75605655 0.10134894 prediction 0.54102007371914 Functional Loss - OR4N4 ENSG00000183706 CDS Human protein_coding chr15:22382659 chr15:22382662 nonsynonymous SNV 0.923 1 24 hm5C_associated_SNPs_59832 0 0 0 0 1 OR4N4 chr15:22382742 5'GT 22382742 Upstream 81bp
chr19 7590046 7590046 1 + G T LUSC 7590043 + 7590023 7590063 41 GTGGTCAAGATCCTGGTGGTCACGGTGCAGGTGAGGCCAGC GTGGTCAAGATCCTGGTGGTCACTGTGCAGGTGAGGCCAGC < 41bp 0.825335228443779 0.554827877650761 0.3942134 0.11501014 prediction 0.541014701586037 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7590043 chr19:7590046 synonymous SNV . 0 24 hm5C_associated_SNPs_59834 0 0 0 0 1 MCOLN1 chr19:7590052 5'GT 7590052 Upstream 7bp
chr1 55452105 55452105 1 + G C BLCA 55452101 + 55452081 55452121 41 CTACCTCACTGTGGAGTCCTCAGAGAAGGAGAGCTGCAGGT CTACCTCACTGTGGAGTCCTCAGACAAGGAGAGCTGCAGGT < 41bp 0.770505966419613 0.486280514352082 0.7514631 0.2741061 prediction 0.541011932839226 Functional Loss - TMEM61 ENSG00000143001 CDS Human protein_coding chr1:55452101 chr1:55452105 nonsynonymous SNV 0.552 0 25 hm5C_associated_SNPs_59836 0 0 0 0 1 TMEM61 chr1:55452119 5'GT 55452119 Upstream 15bp
chr7 138862971 138862971 1 + G T LUAD 138862969 + 138862949 138862989 41 CTCCGTTTCAGATACAATACCAGGGAGGCAGTGCATGGCTT CTCCGTTTCAGATACAATACCATGGAGGCAGTGCATGGCTT < 41bp 0.770497774595082 0.434180000886146 0.87448084 0.1884602 prediction 0.540995549190163 Functional Loss - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138862969 chr7:138862971 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_59838 0 0 0 0 2 TTC26 chr7:138862960 3'AG 138862960 Downstream 12bp
chr7 138862971 138862971 1 + G T LUAD 138862969 + 138862949 138862989 41 CTCCGTTTCAGATACAATACCAGGGAGGCAGTGCATGGCTT CTCCGTTTCAGATACAATACCATGGAGGCAGTGCATGGCTT < 41bp 0.770497774595082 0.434180000886146 0.87448084 0.1884602 prediction 0.540995549190163 Functional Loss - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138862969 chr7:138862971 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_59838 0 0 0 0 2 TTC26 chr7:138863048 5'GT 138863048 Upstream 78bp
chr1 171765635 171765635 1 + C T BRCA 171765633 + 171765613 171765653 41 ACCCTATAGGTGTTTTTATTCTCAACCTTGTGTGCCGAGAC ACCCTATAGGTGTTTTTATTCTTAACCTTGTGTGCCGAGAC < 41bp 0.77492776961027 0.504431116381056 0.2071228 0.24510401 prediction 0.540993306458429 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171765633 chr1:171765635 synonymous SNV . 0 23 hm5C_associated_SNPs_59839 0 0 1 0 1 METTL13 chr1:171765622 3'AG 171765622 Downstream 14bp
chr7 150174248 150174248 1 + G T LUAD 150174245 + 150174225 150174265 41 GTGCGACCGGGAACTCTATCCTGGGGAGCCTCGTCTTCACC GTGCGACCGGGAACTCTATCCTGTGGAGCCTCGTCTTCACC < 41bp 0.901231848322876 0.630750281811205 0.92014414 0.35876063 prediction 0.540963133023342 Functional Loss - GIMAP8 ENSG00000171115 CDS Human protein_coding chr7:150174245 chr7:150174248 nonsynonymous SNV 0.054 3 24 hm5C_associated_SNPs_59845 0 0 0 0 1 GIMAP8 chr7:150174180 3'AG 150174180 Downstream 69bp
chr14 52186819 52186819 1 + C T UCEC 52186817 + 52186797 52186837 41 ACATCAGTGACAACCTGGACCTCGACATGGACCAGCTGGAA ACATCAGTGACAACCTGGACCTTGACATGGACCAGCTGGAA < 41bp 0.793379083474825 0.522906911650574 0.09656727 0.024860382 prediction 0.540944343648502 Functional Loss - FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52186817 chr14:52186819 synonymous SNV . 0 23 hm5C_associated_SNPs_59848 0 0 0 0 1 FRMD6 chr14:52186773 3'AG 52186773 Downstream 47bp
chr7 63709510 63709510 1 + G T LUSC 63709508 + 63709488 63709528 41 GCAGATTTATGGCTAAAAGACCGGGATCCCCTGGAAGCCGA GCAGATTTATGGCTAAAAGACCTGGATCCCCTGGAAGCCGA < 41bp 0.868165442308919 0.597695504169988 0.8259956 0.2994214 prediction 0.540939876277863 Functional Loss - ZNF679 ENSG00000197123 CDS Human protein_coding chr7:63709508 chr7:63709510 synonymous SNV . 0 23 hm5C_associated_SNPs_59850 0 0 0 0 1 ZNF679 chr7:63709534 5'GT 63709534 Upstream 25bp
chr3 179103475 179103475 1 + G T UCEC 179103472 + 179103452 179103492 41 AGGATTGGCGTCCGTTACATCTAGAACTTCTATGGGCATCA AGGATTGGCGTCCGTTACATCTATAACTTCTATGGGCATCA < 41bp 0.770464687107904 0.403838033764608 0.21013436 0.11940846 prediction 0.540929374215807 Functional Loss - MFN1 ENSG00000171109 CDS Human protein_coding chr3:179103472 chr3:179103475 nonsynonymous SNV 0.739 5 24 hm5C_associated_SNPs_59851 0 0 1 0 1 MFN1 chr3:179103509 5'GT 179103509 Upstream 35bp
chrX 48545265 48545265 1 + G T UCEC 48545263 + 48545243 48545283 41 ATACCGTGGGCTCCCAGCACCTGGACCTAGCCCAGCTGATA ATACCGTGGGCTCCCAGCACCTTGACCTAGCCCAGCTGATA < 41bp 0.77045785463055 0.42544892138222 0.38609308 0.15970808 prediction 0.540915709261099 Functional Loss - WAS ENSG00000015285 CDS Human protein_coding chrX:48545263 chrX:48545265 stopgain 0.928 0 23 hm5C_associated_SNPs_59853 0 0 0 0 2 WAS chrX:48545170 3'AG 48545170 Downstream 96bp
chrX 48545265 48545265 1 + G T UCEC 48545263 + 48545243 48545283 41 ATACCGTGGGCTCCCAGCACCTGGACCTAGCCCAGCTGATA ATACCGTGGGCTCCCAGCACCTTGACCTAGCCCAGCTGATA < 41bp 0.77045785463055 0.42544892138222 0.38609308 0.15970808 prediction 0.540915709261099 Functional Loss - WAS ENSG00000015285 CDS Human protein_coding chrX:48545263 chrX:48545265 stopgain 0.928 0 23 hm5C_associated_SNPs_59853 0 0 0 0 2 WAS chrX:48545344 5'GT 48545344 Upstream 80bp
chr6 155451515 155451515 1 + G T LUAD 155451512 + 155451492 155451532 41 AGGATGCGACGGATCAGTGACTGGACGGGAAGCCTCTCAAG AGGATGCGACGGATCAGTGACTGTACGGGAAGCCTCTCAAG < 41bp 0.770435723625697 0.406998512537326 0.7941054 0.3856111 prediction 0.540871447251394 Functional Loss - TIAM2 ENSG00000146426 CDS Human protein_coding chr6:155451512 chr6:155451515 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_59855 0 0 0 0 1 TIAM2 chr6:155451551 5'GT 155451551 Upstream 37bp
chr1 181018381 181018381 1 + G T LUSC 181018379 + 181018359 181018399 41 ACTGGGAGAGGTACACTCAGCTGCTGAGGGGCTGGCAGCAG ACTGGGAGAGGTACACTCAGCTTCTGAGGGGCTGGCAGCAG < 41bp 0.770435501100563 0.433623663932102 0.5349847 0.3761626 prediction 0.540871002201126 Functional Loss - MR1 ENSG00000153029 CDS Human protein_coding chr1:181018379 chr1:181018381 synonymous SNV . 0 23 hm5C_associated_SNPs_59856 0 0 1 0 1 MR1 chr1:181018448 5'GT 181018448 Upstream 68bp
chr12 29617532 29617532 1 - G A COAD 29617534 - 29617514 29617554 41 AGCTCTCCTCTGGAGTACAACTCGGTGGTGAGGCCAGTATG AGCTCTCCTCTGGAGTACAACTTGGTGGTGAGGCCAGTATG < 41bp 0.776585550842722 0.506161194317611 0.3774682 0.22396842 prediction 0.540848713050221 Functional Loss - OVCH1 ENSG00000187950 CDS Human protein_coding chr12:29617534 chr12:29617532 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_59857 0 0 0 0 1 OVCH1 chr12:29617440 5'GT 29617440 Upstream 93bp
chrX 136651151 136651151 1 + C T COAD 136651149 + 136651129 136651169 41 AAGCACATGCATGTGCATACCTCGGACAAGCCCTATATCTG AAGCACATGCATGTGCATACCTTGGACAAGCCCTATATCTG < 41bp 0.770396352446335 0.49340125002384 0.07966381 0.08928493 prediction 0.540792704892669 Functional Loss - ZIC3 ENSG00000156925 CDS Human protein_coding chrX:136651149 chrX:136651151 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_59860 0 0 1 0 2 ZIC3 chrX:136651061 3'AG 136651061 Downstream 91bp
chrX 136651151 136651151 1 + C T COAD 136651149 + 136651129 136651169 41 AAGCACATGCATGTGCATACCTCGGACAAGCCCTATATCTG AAGCACATGCATGTGCATACCTTGGACAAGCCCTATATCTG < 41bp 0.770396352446335 0.49340125002384 0.07966381 0.08928493 prediction 0.540792704892669 Functional Loss - ZIC3 ENSG00000156925 CDS Human protein_coding chrX:136651149 chrX:136651151 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_59860 0 0 1 0 2 ZIC3 chrX:136651224 5'GT 136651224 Upstream 74bp
chr15 45249150 45249150 1 + G C GBM 45249146 + 45249126 45249166 41 GCCGCCGACTTCTTGTTCAGCTGTGATGCCTCGCACCCAGA GCCGCCGACTTCTTGTTCAGCTGTCATGCCTCGCACCCAGA < 41bp 0.770391539473957 0.485492558044313 0.18290275 0.09913698 prediction 0.540783078947913 Functional Loss - TERB2 ENSG00000167014 CDS Human protein_coding chr15:45249146 chr15:45249150 nonsynonymous SNV 0.982 4 25 hm5C_associated_SNPs_59863 0 0 0 0 2 TERB2 chr15:45249094 3'AG 45249094 Downstream 57bp
chr15 45249150 45249150 1 + G C GBM 45249146 + 45249126 45249166 41 GCCGCCGACTTCTTGTTCAGCTGTGATGCCTCGCACCCAGA GCCGCCGACTTCTTGTTCAGCTGTCATGCCTCGCACCCAGA < 41bp 0.770391539473957 0.485492558044313 0.18290275 0.09913698 prediction 0.540783078947913 Functional Loss - TERB2 ENSG00000167014 CDS Human protein_coding chr15:45249146 chr15:45249150 nonsynonymous SNV 0.982 4 25 hm5C_associated_SNPs_59863 0 0 0 0 2 TERB2 chr15:45249175 5'GT 45249175 Upstream 26bp
chr10 22605389 22605389 1 + G T SARC 22605386 + 22605366 22605406 41 TGCAGAAAGGCTTCCAGATGCTGGCGGATCCCCGCTCCTTC TGCAGAAAGGCTTCCAGATGCTGTCGGATCCCCGCTCCTTC < 41bp 0.893540731877993 0.623149846608617 0.72779924 0.14474773 prediction 0.540781770538752 Functional Loss - COMMD3;COMMD3-BMI1 ENSG00000148444;ENSG00000269897 CDS Human other chr10:22605386 chr10:22605389 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_59864 0 0 1 0 1 COMMD3;COMMD3-BMI1 chr10:22605485 5'GT 22605485 Upstream 97bp
chr6 126278260 126278260 1 + G T COAD 126278258 + 126278238 126278278 41 CCAGAGCCCAAGGACTACGACAGCACCTGCGTGTTCTGCCG CCAGAGCCCAAGGACTACGACATCACCTGCGTGTTCTGCCG < 41bp 0.865021001860866 0.594636597917291 0.23745024 0.106484145 prediction 0.540768807887151 Functional Loss - HINT3 ENSG00000111911 CDS Human protein_coding chr6:126278258 chr6:126278260 nonsynonymous SNV 0.802 1 23 hm5C_associated_SNPs_59866 0 0 1 0 1 HINT3 chr6:126278324 5'GT 126278324 Upstream 65bp
chr20 19677526 19677526 1 + G T THCA 19677524 + 19677504 19677544 41 GCTGGGACCAGCGTGCCTGACTGCATGGCCAGCCTCATTGT GCTGGGACCAGCGTGCCTGACTTCATGGCCAGCCTCATTGT < 41bp 0.837226465354151 0.566855713622045 0.4861671 0.28039593 prediction 0.540741503464213 Functional Loss - SLC24A3 ENSG00000185052 CDS Human protein_coding chr20:19677524 chr20:19677526 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_59868 0 0 0 0 2 SLC24A3 chr20:19677441 3'AG 19677441 Downstream 86bp
chr20 19677526 19677526 1 + G T THCA 19677524 + 19677504 19677544 41 GCTGGGACCAGCGTGCCTGACTGCATGGCCAGCCTCATTGT GCTGGGACCAGCGTGCCTGACTTCATGGCCAGCCTCATTGT < 41bp 0.837226465354151 0.566855713622045 0.4861671 0.28039593 prediction 0.540741503464213 Functional Loss - SLC24A3 ENSG00000185052 CDS Human protein_coding chr20:19677524 chr20:19677526 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_59868 0 0 0 0 2 SLC24A3 chr20:19677555 5'GT 19677555 Upstream 30bp
chr11 118948776 118948776 1 + G T LUAD 118948773 + 118948753 118948793 41 GATAGGGAGGCCCCAGGCTGCAGGGTGAGGCTGCAGGGAAA GATAGGGAGGCCCCAGGCTGCAGTGTGAGGCTGCAGGGAAA < 41bp 0.902079463607679 0.63170876822352 0.90066135 0.7672575 prediction 0.540741390768319 Functional Loss - VPS11 ENSG00000160695 CDS Human protein_coding chr11:118948773 chr11:118948776 nonsynonymous SNV 0.591 0 24 hm5C_associated_SNPs_59869 0 0 0 0 1 VPS11 chr11:118948776 3'AG 118948776 Downstream 1bp
chr17 27186093 27186093 1 + G T UCEC 27186090 + 27186070 27186110 41 ACATTATCCGAGAGAAGCTCCTAGAACACCTGCCCCAGGAG ACATTATCCGAGAGAAGCTCCTATAACACCTGCCCCAGGAG < 41bp 0.770367586209765 0.38110755775687 0.28908074 0.69807535 prediction 0.54073517241953 Functional Loss - ERAL1 ENSG00000132591 CDS Human protein_coding chr17:27186090 chr17:27186093 stopgain 0.951 1 24 hm5C_associated_SNPs_59870 0 0 1 3 1 ERAL1 chr17:27186131 5'GT 27186131 Upstream 39bp
chr3 184008621 184008621 1 + G T HNSC 184008618 + 184008598 184008638 41 GCATCGGTGTGGTCATGGGCCATGAGTTGACGCATGCCTTT GCATCGGTGTGGTCATGGGCCATTAGTTGACGCATGCCTTT < 41bp 0.770364793213896 0.387133712584145 0.025116771 0.022759736 prediction 0.540729586427793 Functional Loss - ECE2 ENSG00000145194 CDS Human protein_coding chr3:184008618 chr3:184008621 stopgain 0.972 1 24 hm5C_associated_SNPs_59871 0 0 0 0 2 ECE2 chr3:184008581 3'AG 184008581 Downstream 41bp
chr3 184008621 184008621 1 + G T HNSC 184008618 + 184008598 184008638 41 GCATCGGTGTGGTCATGGGCCATGAGTTGACGCATGCCTTT GCATCGGTGTGGTCATGGGCCATTAGTTGACGCATGCCTTT < 41bp 0.770364793213896 0.387133712584145 0.025116771 0.022759736 prediction 0.540729586427793 Functional Loss - ECE2 ENSG00000145194 CDS Human protein_coding chr3:184008618 chr3:184008621 stopgain 0.972 1 24 hm5C_associated_SNPs_59871 0 0 0 0 2 ECE2 chr3:184008648 5'GT 184008648 Upstream 28bp
chr17 73689542 73689542 1 + G C LUAD 73689541 + 73689521 73689561 41 ATAATACAGAAGCAGAAAAGCGAGACCCCCAGGAACTCGTG ATAATACAGAAGCAGAAAAGCCAGACCCCCAGGAACTCGTG < 41bp 0.840915720258806 0.570550952236368 0.4086811 0.28025395 prediction 0.540729536044877 Functional Loss - SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73689541 chr17:73689542 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_59872 0 0 1 0 2 SAP30BP chr17:73689520 3'AG 73689520 Downstream 23bp
chr17 73689542 73689542 1 + G C LUAD 73689541 + 73689521 73689561 41 ATAATACAGAAGCAGAAAAGCGAGACCCCCAGGAACTCGTG ATAATACAGAAGCAGAAAAGCCAGACCCCCAGGAACTCGTG < 41bp 0.840915720258806 0.570550952236368 0.4086811 0.28025395 prediction 0.540729536044877 Functional Loss - SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73689541 chr17:73689542 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_59872 0 0 1 0 2 SAP30BP chr17:73689562 5'GT 73689562 Upstream 21bp
chr7 74004202 74004202 1 + C T READ 74004200 + 74004180 74004220 41 ATGAAGATGACGCCAACAGACTCGGGGAGAAGGTGATCCTG ATGAAGATGACGCCAACAGACTTGGGGAGAAGGTGATCCTG < 41bp 0.780371715566334 0.510008677643541 0.24482393 0.4575354 prediction 0.540726075845585 Functional Loss - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:74004200 chr7:74004202 synonymous SNV . 0 23 hm5C_associated_SNPs_59873 0 0 1 0 2 GTF2IRD1 chr7:74004180 3'AG 74004180 Downstream 23bp
chr7 74004202 74004202 1 + C T READ 74004200 + 74004180 74004220 41 ATGAAGATGACGCCAACAGACTCGGGGAGAAGGTGATCCTG ATGAAGATGACGCCAACAGACTTGGGGAGAAGGTGATCCTG < 41bp 0.780371715566334 0.510008677643541 0.24482393 0.4575354 prediction 0.540726075845585 Functional Loss - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:74004200 chr7:74004202 synonymous SNV . 0 23 hm5C_associated_SNPs_59873 0 0 1 0 2 GTF2IRD1 chr7:74004257 5'GT 74004257 Upstream 56bp
chr6 148664279 148664279 1 + G T LUSC 148664276 + 148664256 148664296 41 AGCCGGAGCCCGAGCCCGCGCCGGAGCCGGAACCGGAGCCC AGCCGGAGCCCGAGCCCGCGCCGTAGCCGGAACCGGAGCCC < 41bp 0.898879165368488 0.628528432312581 0.9035027 0.85194516 prediction 0.540701466111814 Functional Loss - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148664276 chr6:148664279 stopgain 0.002 0 24 hm5C_associated_SNPs_59878 0 0 0 0 1 SASH1 chr6:148664359 5'GT 148664359 Upstream 81bp
chr2 203560705 203560705 1 + C T STAD 203560703 + 203560683 203560723 41 GTATCTTGCTGGACACTGGCCTCGGGATAGCCATGGGCAAG GTATCTTGCTGGACACTGGCCTTGGGATAGCCATGGGCAAG < 41bp 0.770298935442545 0.493223952017398 0.046455204 0.08134207 prediction 0.540597870885091 Functional Loss - FAM117B ENSG00000138439 CDS Human protein_coding chr2:203560703 chr2:203560705 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_59884 0 0 1 0 1 FAM117B chr2:203560755 5'GT 203560755 Upstream 51bp
chr19 38689097 38689097 1 + G T CHOL 38689095 + 38689075 38689115 41 CCCCCTGCGGCGCCTGGACCCTGGGCTGATGCCCCTGCCTG CCCCCTGCGGCGCCTGGACCCTTGGCTGATGCCCCTGCCTG < 41bp 0.869054691051591 0.598756931223523 0.9010874 0.23740491 prediction 0.540595519656137 Functional Loss - SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38689095 chr19:38689097 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_59885 0 0 1 0 2 SIPA1L3 chr19:38689029 3'AG 38689029 Downstream 69bp
chr19 38689097 38689097 1 + G T CHOL 38689095 + 38689075 38689115 41 CCCCCTGCGGCGCCTGGACCCTGGGCTGATGCCCCTGCCTG CCCCCTGCGGCGCCTGGACCCTTGGCTGATGCCCCTGCCTG < 41bp 0.869054691051591 0.598756931223523 0.9010874 0.23740491 prediction 0.540595519656137 Functional Loss - SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38689095 chr19:38689097 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_59885 0 0 1 0 2 SIPA1L3 chr19:38689172 5'GT 38689172 Upstream 76bp
chr19 7743422 7743422 1 + G T LUAD 7743420 + 7743400 7743440 41 GAAGAGAGACAGAAGAGAGGCTGGGATTCCGTTCAGCAGAG GAAGAGAGACAGAAGAGAGGCTTGGATTCCGTTCAGCAGAG < 41bp 0.868518677663816 0.598246891772034 0.27639925 0.055564016 prediction 0.540543571783563 Functional Loss - MCEMP1 ENSG00000183019;ENSG00000269711 CDS Human protein_coding chr19:7743420 chr19:7743422 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_59887 0 0 0 0 2 MCEMP1 chr19:7743377 3'AG 7743377 Downstream 46bp
chr19 7743422 7743422 1 + G T LUAD 7743420 + 7743400 7743440 41 GAAGAGAGACAGAAGAGAGGCTGGGATTCCGTTCAGCAGAG GAAGAGAGACAGAAGAGAGGCTTGGATTCCGTTCAGCAGAG < 41bp 0.868518677663816 0.598246891772034 0.27639925 0.055564016 prediction 0.540543571783563 Functional Loss - MCEMP1 ENSG00000183019;ENSG00000269711 CDS Human other chr19:7743420 chr19:7743422 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_59887 0 0 0 0 2 MCEMP1 chr19:7743490 5'GT 7743490 Upstream 69bp
chr9 124538629 124538629 1 + G T UCEC 124538627 + 124538607 124538647 41 GCGAGGAGCGGCTGCGGCGGCAGCAGGAGGACAAGGACATC GCGAGGAGCGGCTGCGGCGGCATCAGGAGGACAAGGACATC < 41bp 0.770262672189089 0.437118994802922 0.87708926 0.84092474 prediction 0.540525344378177 Functional Loss - DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124538627 chr9:124538629 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_59889 0 0 0 0 1 DAB2IP chr9:124538670 5'GT 124538670 Upstream 42bp
chr5 79351785 79351785 1 + C T SKCM 79351783 + 79351763 79351803 41 GTGGATTCCGTTCACAATCTCCCCAGGGCCTTTGCTGGCCC GTGGATTCCGTTCACAATCTCCTCAGGGCCTTTGCTGGCCC < 41bp 0.770250573095517 0.485564289504634 0.3134457 0.07893023 prediction 0.540501146191034 Functional Loss - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79351783 chr5:79351785 nonsynonymous SNV 0.974 4 23 hm5C_associated_SNPs_59890 0 0 0 0 1 THBS4 chr5:79351855 5'GT 79351855 Upstream 71bp
chr17 46002389 46002389 1 + G C CESC 46002385 + 46002365 46002405 41 CAAATGGAACAAGCCCTGGCCGGAGAGACCCAGCCCGGGGA CAAATGGAACAAGCCCTGGCCGGACAGACCCAGCCCGGGGA < 41bp 0.770241745115046 0.496154299282703 0.8764559 0.30178452 prediction 0.540483490230091 Functional Loss - SP2 ENSG00000167182 CDS Human protein_coding chr17:46002385 chr17:46002389 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_59893 0 0 0 0 1 SP2 chr17:46002459 5'GT 46002459 Upstream 71bp
chrX 134991884 134991884 1 + G T UCEC 134991882 + 134991862 134991902 41 TGACTTGTCAACTGTTCTACCAGGACTTACTTATTTGACAG TGACTTGTCAACTGTTCTACCATGACTTACTTATTTGACAG < 41bp 0.865616908036144 0.595385726751971 0.8710285 0.22153407 prediction 0.540462362568345 Functional Loss - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134991882 chrX:134991884 stopgain 0.001 0 23 hm5C_associated_SNPs_59895 0 0 0 0 1 SAGE1 chrX:134991798 3'AG 134991798 Downstream 87bp
chr4 42895590 42895590 1 + A T SKCM 42895586 + 42895566 42895606 41 AGAAGAGTCAACATTTTAAGCAAAAATGGCACAGTCAGAGG AGAAGAGTCAACATTTTAAGCAAATATGGCACAGTCAGAGG < 41bp 0.770228061230921 0.461355296322129 0.06788123 0.05860555 prediction 0.540456122461842 Functional Loss - GRXCR1 ENSG00000215203 CDS Human protein_coding chr4:42895586 chr4:42895590 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_59896 0 0 0 0 1 GRXCR1 chr4:42895667 5'GT 42895667 Upstream 78bp
chr8 43046701 43046701 1 + G T ESCA 43046698 + 43046678 43046718 41 TGGTGCTGGAAGGCCTGTGGCTGGGCTTGACATTCCTCCTG TGGTGCTGGAAGGCCTGTGGCTGTGCTTGACATTCCTCCTG < 41bp 0.911590835110807 0.64139009484213 0.9013792 0.37728977 prediction 0.540401480537355 Functional Loss - HGSNAT ENSG00000165102 CDS Human protein_coding chr8:43046698 chr8:43046701 nonsynonymous SNV 0.694 0 24 hm5C_associated_SNPs_59897 0 0 1 0 2 HGSNAT chr8:43046617 3'AG 43046617 Downstream 85bp
chr8 43046701 43046701 1 + G T ESCA 43046698 + 43046678 43046718 41 TGGTGCTGGAAGGCCTGTGGCTGGGCTTGACATTCCTCCTG TGGTGCTGGAAGGCCTGTGGCTGTGCTTGACATTCCTCCTG < 41bp 0.911590835110807 0.64139009484213 0.9013792 0.37728977 prediction 0.540401480537355 Functional Loss - HGSNAT ENSG00000165102 CDS Human protein_coding chr8:43046698 chr8:43046701 nonsynonymous SNV 0.694 0 24 hm5C_associated_SNPs_59897 0 0 1 0 2 HGSNAT chr8:43046738 5'GT 43046738 Upstream 38bp
chr6 19838366 19838366 1 + G T LUAD 19838363 + 19838343 19838383 41 CCGCCCGCGCCGCCACACCACCCGGCCGGGACCTGTCCAGC CCGCCCGCGCCGCCACACCACCCTGCCGGGACCTGTCCAGC < 41bp 0.770189467783314 0.39822257697943 0.10140443 0.023642063 prediction 0.540378935566628 Functional Loss - ID4 ENSG00000172201 CDS Human protein_coding chr6:19838363 chr6:19838366 synonymous SNV . 0 24 hm5C_associated_SNPs_59899 0 0 0 0 1 ID4 chr6:19838426 5'GT 19838426 Upstream 61bp
chr1 43688613 43688613 1 + A C rs138121612 43688609 + 43688589 43688629 41 CCAAGTATGAGAAAAAGCTTCGGGATGAAAAGGAATCAAAC CCAAGTATGAGAAAAAGCTTCGGGCTGAAAAGGAATCAAAC < 41bp 0.770173435754597 0.365930805187668 0.87037605 0.7857611 prediction 0.540346871509195 Functional Loss - CFAP57 ENSG00000243710 CDS Human protein_coding chr1:43688609 chr1:43688613 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_59902 0 0 0 0 1 CFAP57 chr1:43688668 5'GT 43688668 Upstream 56bp
chr3 184293708 184293708 1 + G T UCEC 184293706 + 184293686 184293726 41 CGTACCACCTCCCCAGCCGCCAGCATCTGCACCTGCCACAA CGTACCACCTCCCCAGCCGCCATCATCTGCACCTGCCACAA < 41bp 0.770171170146376 0.41757085198996 0.06380856 0.012530625 prediction 0.540342340292752 Functional Loss - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184293706 chr3:184293708 nonsynonymous SNV 0.986 3 23 hm5C_associated_SNPs_59904 0 0 0 0 2 EPHB3 chr3:184293618 3'AG 184293618 Downstream 91bp
chr3 184293708 184293708 1 + G T UCEC 184293706 + 184293686 184293726 41 CGTACCACCTCCCCAGCCGCCAGCATCTGCACCTGCCACAA CGTACCACCTCCCCAGCCGCCATCATCTGCACCTGCCACAA < 41bp 0.770171170146376 0.41757085198996 0.06380856 0.012530625 prediction 0.540342340292752 Functional Loss - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184293706 chr3:184293708 nonsynonymous SNV 0.986 3 23 hm5C_associated_SNPs_59904 0 0 0 0 2 EPHB3 chr3:184293773 5'GT 184293773 Upstream 66bp
chr1 52747475 52747475 1 + G T LUSC 52747473 + 52747453 52747493 41 ATCACTTTGTGCAGCTTTATCGGGATGCTCTGGCAGGTAGG ATCACTTTGTGCAGCTTTATCGTGATGCTCTGGCAGGTAGG < 41bp 0.857880698728339 0.587718983645174 0.940065 0.73966885 prediction 0.540323430166331 Functional Loss - ZFYVE9 ENSG00000157077 CDS Human protein_coding chr1:52747473 chr1:52747475 synonymous SNV . 0 23 hm5C_associated_SNPs_59906 0 0 1 0 1 ZFYVE9 chr1:52747488 5'GT 52747488 Upstream 14bp
chrX 53457867 53457867 1 + G T UCEC 53457865 + 53457845 53457885 41 TCTTTCACAGGCAGGATTACCTGAATTCAGTAATCTACACC TCTTTCACAGGCAGGATTACCTTAATTCAGTAATCTACACC < 41bp 0.770154068577893 0.447490287393839 0.11635843 0.06003502 prediction 0.540308137155787 Functional Loss - RIBC1 ENSG00000158423 CDS Human protein_coding chrX:53457865 chrX:53457867 synonymous SNV . 0 23 hm5C_associated_SNPs_59907 0 0 0 0 1 RIBC1 chrX:53457855 3'AG 53457855 Downstream 13bp
chr3 153958329 153958329 1 + C T UCEC 153958327 + 153958307 153958347 41 CTGACAGTCCTTAGTAACCACGCGAATGAGAAAGTGGAGAT CTGACAGTCCTTAGTAACCACGTGAATGAGAAAGTGGAGAT < 41bp 0.796507227143704 0.526353479301882 0.4858367 0.401478 prediction 0.540307495683643 Functional Loss - ARHGEF26 ENSG00000114790 CDS Human protein_coding chr3:153958327 chr3:153958329 nonsynonymous SNV 0.819 1 23 hm5C_associated_SNPs_59908 0 0 1 0 1 ARHGEF26 chr3:153958368 5'GT 153958368 Upstream 40bp
chr18 2610781 2610781 1 + C T KICH 2610779 + 2610759 2610799 41 TACCAACTAGTTGTGCAAACCACGACTGAAGAAAGACGAAA TACCAACTAGTTGTGCAAACCATGACTGAAGAAAGACGAAA < 41bp 0.784514125497845 0.514404627117467 0.06983009 0.085433155 prediction 0.540218996760755 Functional Loss - NDC80 ENSG00000080986 CDS Human protein_coding chr18:2610779 chr18:2610781 nonsynonymous SNV 0.700 3 23 hm5C_associated_SNPs_59912 0 0 1 0 2 NDC80 chr18:2610758 3'AG 2610758 Downstream 24bp
chr18 2610781 2610781 1 + C T KICH 2610779 + 2610759 2610799 41 TACCAACTAGTTGTGCAAACCACGACTGAAGAAAGACGAAA TACCAACTAGTTGTGCAAACCATGACTGAAGAAAGACGAAA < 41bp 0.784514125497845 0.514404627117467 0.06983009 0.085433155 prediction 0.540218996760755 Functional Loss - NDC80 ENSG00000080986 CDS Human protein_coding chr18:2610779 chr18:2610781 nonsynonymous SNV 0.700 3 23 hm5C_associated_SNPs_59912 0 0 1 0 2 NDC80 chr18:2610860 5'GT 2610860 Upstream 80bp
chr8 30032666 30032666 1 + G C LUAD 30032665 + 30032645 30032685 41 GCCGGGCCAATAGTGATTGGCGAAGGGAACCTAATAGAAGA GCCGGGCCAATAGTGATTGGCCAAGGGAACCTAATAGAAGA < 41bp 0.770107265689185 0.481880434208171 0.61008185 0.31476977 prediction 0.540214531378371 Functional Loss - DCTN6 ENSG00000104671 CDS Human protein_coding chr8:30032665 chr8:30032666 nonsynonymous SNV 0.990 2 22 hm5C_associated_SNPs_59914 0 0 1 0 2 DCTN6 chr8:30032601 3'AG 30032601 Downstream 66bp
chr8 30032666 30032666 1 + G C LUAD 30032665 + 30032645 30032685 41 GCCGGGCCAATAGTGATTGGCGAAGGGAACCTAATAGAAGA GCCGGGCCAATAGTGATTGGCCAAGGGAACCTAATAGAAGA < 41bp 0.770107265689185 0.481880434208171 0.61008185 0.31476977 prediction 0.540214531378371 Functional Loss - DCTN6 ENSG00000104671 CDS Human protein_coding chr8:30032665 chr8:30032666 nonsynonymous SNV 0.990 2 22 hm5C_associated_SNPs_59914 0 0 1 0 2 DCTN6 chr8:30032706 5'GT 30032706 Upstream 41bp
chr8 96044275 96044275 1 + C T STAD 96044273 + 96044253 96044293 41 CCTGCTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCAC CCTGCTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCAC < 41bp 0.773224144333249 0.503140793984422 0.3201416 0.25765988 prediction 0.540166700697656 Functional Loss - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044273 chr8:96044275 stopgain 0.994 0 23 hm5C_associated_SNPs_59916 0 0 1 8 2 NDUFAF6 chr8:96044223 3'AG 96044223 Downstream 53bp
chr8 96044275 96044275 1 + C T STAD 96044273 + 96044253 96044293 41 CCTGCTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCAC CCTGCTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCAC < 41bp 0.773224144333249 0.503140793984422 0.3201416 0.25765988 prediction 0.540166700697656 Functional Loss - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044273 chr8:96044275 stopgain 0.994 0 23 hm5C_associated_SNPs_59916 0 0 1 8 2 NDUFAF6 chr8:96044326 5'GT 96044326 Upstream 52bp
chr15 69327745 69327745 1 + C T BLCA 69327743 + 69327723 69327763 41 GCTGCGGGCCACGTGGCTGGCTCAAGTCCTACCACTGGACC GCTGCGGGCCACGTGGCTGGCTTAAGTCCTACCACTGGACC < 41bp 0.78583871172878 0.515784852200241 0.14914104 0.15323931 prediction 0.540107719057078 Functional Loss - NOX5 ENSG00000255346 CDS Human protein_coding chr15:69327743 chr15:69327745 stopgain 0.992 1 23 hm5C_associated_SNPs_59923 0 0 0 0 1 NOX5 chr15:69327694 3'AG 69327694 Downstream 52bp
chr11 69957819 69957819 1 + C T LGG 69957817 + 69957797 69957837 41 TGCCTCTGTTTTTAAGGCATCACGAGCCTGCTGGCCAATGG TGCCTCTGTTTTTAAGGCATCATGAGCCTGCTGGCCAATGG < 41bp 0.770052435546238 0.499616217534925 0.07013035 0.09292868 prediction 0.540104871092475 Functional Loss - ANO1 ENSG00000131620 CDS Human protein_coding chr11:69957817 chr11:69957819 nonsynonymous SNV 0.962 3 23 hm5C_associated_SNPs_59925 0 0 0 0 2 ANO1 chr11:69957813 3'AG 69957813 Downstream 7bp
chr11 69957819 69957819 1 + C T LGG 69957817 + 69957797 69957837 41 TGCCTCTGTTTTTAAGGCATCACGAGCCTGCTGGCCAATGG TGCCTCTGTTTTTAAGGCATCATGAGCCTGCTGGCCAATGG < 41bp 0.770052435546238 0.499616217534925 0.07013035 0.09292868 prediction 0.540104871092475 Functional Loss - ANO1 ENSG00000131620 CDS Human protein_coding chr11:69957817 chr11:69957819 nonsynonymous SNV 0.962 3 23 hm5C_associated_SNPs_59925 0 0 0 0 2 ANO1 chr11:69957868 5'GT 69957868 Upstream 50bp
chr22 40746003 40746003 1 + C T SKCM 40746001 + 40745981 40746021 41 CAAAAGCTGCAGGCATTATTCACCTTGGTGCTACTTCTTGC CAAAAGCTGCAGGCATTATTCATCTTGGTGCTACTTCTTGC < 41bp 0.770042177140544 0.498262888250225 0.06276795 0.059859008 prediction 0.540084354281088 Functional Loss - ADSL ENSG00000239900 CDS Human protein_coding chr22:40746001 chr22:40746003 synonymous SNV . 0 23 hm5C_associated_SNPs_59930 0 0 1 0 1 ADSL chr22:40746039 5'GT 40746039 Upstream 37bp
chr7 98935878 98935878 1 + G T READ 98935875 + 98935855 98935895 41 GGAGCCAGTGGGTGAAAGCTCATGAACTCAAGGAGCACAAC GGAGCCAGTGGGTGAAAGCTCATTAACTCAAGGAGCACAAC < 41bp 0.77004162272207 0.379948231310643 0.08677682 0.08296463 prediction 0.54008324544414 Functional Loss - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98935875 chr7:98935878 stopgain 0.998 1 24 hm5C_associated_SNPs_59931 0 0 1 0 3 ARPC1A;ARPC1A chr7:98935804 3'AG 98935804 Downstream 75bp
chr7 98935878 98935878 1 + G T READ 98935875 + 98935855 98935895 41 GGAGCCAGTGGGTGAAAGCTCATGAACTCAAGGAGCACAAC GGAGCCAGTGGGTGAAAGCTCATTAACTCAAGGAGCACAAC < 41bp 0.77004162272207 0.379948231310643 0.08677682 0.08296463 prediction 0.54008324544414 Functional Loss - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98935875 chr7:98935878 stopgain 0.998 1 24 hm5C_associated_SNPs_59931 0 0 1 0 3 ARPC1A chr7:98935806 3'AG 98935806 Downstream 73bp
chr7 98935878 98935878 1 + G T READ 98935875 + 98935855 98935895 41 GGAGCCAGTGGGTGAAAGCTCATGAACTCAAGGAGCACAAC GGAGCCAGTGGGTGAAAGCTCATTAACTCAAGGAGCACAAC < 41bp 0.77004162272207 0.379948231310643 0.08677682 0.08296463 prediction 0.54008324544414 Functional Loss - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98935875 chr7:98935878 stopgain 0.998 1 24 hm5C_associated_SNPs_59931 0 0 1 0 3 ARPC1A chr7:98935908 5'GT 98935908 Upstream 31bp
chr9 130472919 130472919 1 + A C UCEC 130472915 + 130472895 130472935 41 CCCTGGAGGAGTTCCGGCTGCAGAAAGAGGAGGTCACGGAC CCCTGGAGGAGTTCCGGCTGCAGACAGAGGAGGTCACGGAC < 41bp 0.770036776774633 0.373370495812462 0.7360101 0.64450246 prediction 0.540073553549266 Functional Loss - CFAP157 ENSG00000160401 CDS Human protein_coding chr9:130472915 chr9:130472919 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_59932 0 0 0 1 1 CFAP157 chr9:130472880 3'AG 130472880 Downstream 40bp
chr12 111885521 111885521 1 + C T BLCA 111885519 + 111885499 111885539 41 GTGCAGCACCTCCACTTTCCCTCGGTCGTGGACATGCTCCA GTGCAGCACCTCCACTTTCCCTTGGTCGTGGACATGCTCCA < 41bp 0.787725003453039 0.517703368404474 0.08194935 0.08657092 prediction 0.54004327009713 Functional Loss - SH2B3 ENSG00000111252 CDS Human protein_coding chr12:111885519 chr12:111885521 nonsynonymous SNV 0.718 4 23 hm5C_associated_SNPs_59933 0 0 1 0 1 SH2B3 chr12:111885460 3'AG 111885460 Downstream 62bp
chr1 246730090 246730090 1 + G C rs3120714 246730086 + 246730066 246730106 41 CCAGCCGCGCAGCCTCTGCCCTCCGGGTGAGGTGTAGCCCG CCAGCCGCGCAGCCTCTGCCCTCCCGGTGAGGTGTAGCCCG < 41bp 0.770019674985036 0.49700467896328 0.7654574 0.28182325 prediction 0.540039349970072 Functional Loss - CNST ENSG00000162852 UTR5 Human protein_coding chr1:246730086 chr1:246730090 . . 0 25 hm5C_associated_SNPs_59934 0 0 0 0 1 CNST chr1:246730091 5'GT 246730091 Upstream 2bp
chr1 33560248 33560248 1 + G T UCEC 33560245 + 33560225 33560265 41 ATGGGCACCGAGCTGGGTCACAAGATGCACGTTCTGGACCT ATGGGCACCGAGCTGGGTCACAATATGCACGTTCTGGACCT < 41bp 0.896879497149993 0.626871144128993 0.87187994 0.36153528 prediction 0.540016706041999 Functional Loss - AZIN2 ENSG00000142920 CDS Human protein_coding chr1:33560245 chr1:33560248 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_59936 0 0 1 0 2 AZIN2 chr1:33560149 3'AG 33560149 Downstream 100bp
chr1 33560248 33560248 1 + G T UCEC 33560245 + 33560225 33560265 41 ATGGGCACCGAGCTGGGTCACAAGATGCACGTTCTGGACCT ATGGGCACCGAGCTGGGTCACAATATGCACGTTCTGGACCT < 41bp 0.896879497149993 0.626871144128993 0.87187994 0.36153528 prediction 0.540016706041999 Functional Loss - AZIN2 ENSG00000142920 CDS Human protein_coding chr1:33560245 chr1:33560248 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_59936 0 0 1 0 2 AZIN2 chr1:33560314 5'GT 33560314 Upstream 67bp
chr20 34526674 34526674 1 + G T LUAD 34526672 + 34526652 34526692 41 CCAGCCTTGGAAACAGCACTCAGGGGAGGGGAGATCTCATT CCAGCCTTGGAAACAGCACTCATGGGAGGGGAGATCTCATT < 41bp 0.769992250045397 0.423152182317528 0.9264718 0.7036177 prediction 0.539984500090794 Functional Loss - PHF20 ENSG00000025293 CDS Human protein_coding chr20:34526672 chr20:34526674 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_59937 0 0 1 0 1 PHF20 chr20:34526619 3'AG 34526619 Downstream 56bp
chr6 44144383 44144383 1 + G T LUAD 44144381 + 44144361 44144401 41 CTGCTGCACAAGACGGAGGACGGGGAGTTCTGGTCAGTGTG CTGCTGCACAAGACGGAGGACGTGGAGTTCTGGTCAGTGTG < 41bp 0.769982369536994 0.415957834698635 0.8774575 0.41187364 prediction 0.539964739073988 Functional Loss - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44144381 chr6:44144383 nonsynonymous SNV 0.062 4 23 hm5C_associated_SNPs_59938 0 0 0 0 1 CAPN11 chr6:44144392 5'GT 44144392 Upstream 10bp
chr1 161132177 161132177 1 + G T CESC 161132175 + 161132155 161132195 41 AGGCCGAGCCCAAGAGCTCACTGAAGGTGGGGCAACAACTC AGGCCGAGCCCAAGAGCTCACTTAAGGTGGGGCAACAACTC < 41bp 0.870147831322897 0.60016915948558 0.33461905 0.56390977 prediction 0.539957343674634 Functional Loss - USP21 ENSG00000143258 CDS Human protein_coding chr1:161132175 chr1:161132177 stopgain 0.987 0 23 hm5C_associated_SNPs_59939 0 0 1 0 1 USP21 chr1:161132180 5'GT 161132180 Upstream 4bp
chrX 99854027 99854027 1 + G T COAD 99854024 + 99854004 99854044 41 TTATCTTAGTTTCTGAGTTACAAGACTTTGAGGAGGAGGGA TTATCTTAGTTTCTGAGTTACAATACTTTGAGGAGGAGGGA < 41bp 0.76997408647949 0.424436308610514 0.14199921 0.12941349 prediction 0.53994817295898 Functional Loss - TNMD ENSG00000000005 CDS Human protein_coding chrX:99854024 chrX:99854027 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_59940 0 0 0 0 1 TNMD chrX:99854013 3'AG 99854013 Downstream 15bp
chr12 113416552 113416552 1 + G T BLCA 113416549 + 113416529 113416569 41 ACACCATCTGTGACGTCCTGCAGGAACCCGAACAGTTCCCC ACACCATCTGTGACGTCCTGCAGTAACCCGAACAGTTCCCC < 41bp 0.769966221566288 0.384082672449241 0.31769207 0.12659109 prediction 0.539932443132575 Functional Loss - OAS2 ENSG00000111335 CDS Human protein_coding chr12:113416549 chr12:113416552 stopgain 0.000 0 24 hm5C_associated_SNPs_59942 0 0 0 0 1 OAS2 chr12:113416590 5'GT 113416590 Upstream 39bp
chr8 25337499 25337499 1 + A C LUAD 25337495 + 25337475 25337515 41 CGTTTCGCCTGACACGTTCACAGCAGAAGTGAGCTCAGACG CGTTTCGCCTGACACGTTCACAGCCGAAGTGAGCTCAGACG < 41bp 0.769965922399345 0.382445782739405 0.76768553 0.69051397 prediction 0.53993184479869 Functional Loss - CDCA2 ENSG00000184661 CDS Human protein_coding chr8:25337495 chr8:25337499 synonymous SNV . 0 25 hm5C_associated_SNPs_59943 0 0 1 0 1 CDCA2 chr8:25337429 3'AG 25337429 Downstream 71bp
chr12 110641728 110641728 1 + C T CESC 110641726 + 110641706 110641746 41 ATGATAGCTGTGCAGCAGGCCTCGAAAGCAATCGGTCCAAA ATGATAGCTGTGCAGCAGGCCTTGAAAGCAATCGGTCCAAA < 41bp 0.769964577415267 0.470600352035255 0.8236784 0.108522415 prediction 0.539929154830535 Functional Loss - IFT81 ENSG00000122970 CDS Human protein_coding chr12:110641726 chr12:110641728 synonymous SNV . 0 23 hm5C_associated_SNPs_59944 0 0 0 0 2 IFT81 chr12:110641669 3'AG 110641669 Downstream 60bp
chr12 110641728 110641728 1 + C T CESC 110641726 + 110641706 110641746 41 ATGATAGCTGTGCAGCAGGCCTCGAAAGCAATCGGTCCAAA ATGATAGCTGTGCAGCAGGCCTTGAAAGCAATCGGTCCAAA < 41bp 0.769964577415267 0.470600352035255 0.8236784 0.108522415 prediction 0.539929154830535 Functional Loss - IFT81 ENSG00000122970 CDS Human protein_coding chr12:110641726 chr12:110641728 synonymous SNV . 0 23 hm5C_associated_SNPs_59944 0 0 0 0 2 IFT81 chr12:110641755 5'GT 110641755 Upstream 28bp
chr17 4846555 4846555 1 + G T STAD 4846553 + 4846533 4846573 41 TCACAGGGATTGTGGGACTGCTGGTTTTGGCCATGGGAGCA TCACAGGGATTGTGGGACTGCTTGTTTTGGCCATGGGAGCA < 41bp 0.769963760791068 0.43627204662751 0.3546201 0.17443314 prediction 0.539927521582136 Functional Loss - RNF167 ENSG00000108523 CDS Human protein_coding chr17:4846553 chr17:4846555 synonymous SNV . 0 23 hm5C_associated_SNPs_59945 0 0 1 0 2 RNF167 chr17:4846474 3'AG 4846474 Downstream 82bp
chr17 4846555 4846555 1 + G T STAD 4846553 + 4846533 4846573 41 TCACAGGGATTGTGGGACTGCTGGTTTTGGCCATGGGAGCA TCACAGGGATTGTGGGACTGCTTGTTTTGGCCATGGGAGCA < 41bp 0.769963760791068 0.43627204662751 0.3546201 0.17443314 prediction 0.539927521582136 Functional Loss - RNF167 ENSG00000108523 CDS Human protein_coding chr17:4846553 chr17:4846555 synonymous SNV . 0 23 hm5C_associated_SNPs_59945 0 0 1 0 2 RNF167 chr17:4846579 5'GT 4846579 Upstream 25bp
chr5 134223831 134223831 1 + G T PRAD 134223829 + 134223809 134223849 41 CTGTGAGGAGAGAAACATTACAGGATTAGAAAATTTCACTC CTGTGAGGAGAGAAACATTACATGATTAGAAAATTTCACTC < 41bp 0.799596359769157 0.52965824021236 0.6681686 0.09581414 prediction 0.539876239113595 Functional Loss - TXNDC15 ENSG00000113621 CDS Human protein_coding chr5:134223829 chr5:134223831 stopgain 0.012 1 23 hm5C_associated_SNPs_59948 0 0 1 0 1 TXNDC15 chr5:134223872 5'GT 134223872 Upstream 42bp
chr2 74742968 74742968 1 + G C BLCA 74742967 + 74742947 74742987 41 GACCGACGCACAGGTCAAAACGTGGTTCCAGAACCGACGCA GACCGACGCACAGGTCAAAACCTGGTTCCAGAACCGACGCA < 41bp 0.837238015812173 0.567322404093884 0.87890846 0.30315685 prediction 0.539831223436578 Functional Loss - TLX2 ENSG00000115297 CDS Human protein_coding chr2:74742967 chr2:74742968 synonymous SNV 0.996 0 22 hm5C_associated_SNPs_59952 0 0 0 0 1 TLX2 chr2:74742997 5'GT 74742997 Upstream 30bp
chr1 45232525 45232525 1 + G T LUAD 45232523 + 45232503 45232543 41 ACCAGACTGGCTTGAGCTCTCTGAGATGACCGAGCAGCCAG ACCAGACTGGCTTGAGCTCTCTTAGATGACCGAGCAGCCAG < 41bp 0.838555349960194 0.568643403112177 0.10916087 0.063427866 prediction 0.539823893696035 Functional Loss - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45232523 chr1:45232525 stopgain 0.996 0 23 hm5C_associated_SNPs_59953 0 0 1 0 2 KIF2C chr1:45232498 3'AG 45232498 Downstream 28bp
chr1 45232525 45232525 1 + G T LUAD 45232523 + 45232503 45232543 41 ACCAGACTGGCTTGAGCTCTCTGAGATGACCGAGCAGCCAG ACCAGACTGGCTTGAGCTCTCTTAGATGACCGAGCAGCCAG < 41bp 0.838555349960194 0.568643403112177 0.10916087 0.063427866 prediction 0.539823893696035 Functional Loss - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45232523 chr1:45232525 stopgain 0.996 0 23 hm5C_associated_SNPs_59953 0 0 1 0 2 KIF2C chr1:45232621 5'GT 45232621 Upstream 97bp
chr17 72443058 72443058 1 + C T SKCM 72443056 + 72443036 72443076 41 CAGGTGATGGGCAGTGCCAACTCGACCCTGCGGGCTGAAGA CAGGTGATGGGCAGTGCCAACTTGACCCTGCGGGCTGAAGA < 41bp 0.791687866637959 0.5217825037813 0.19449377 0.07093176 prediction 0.539810725713318 Functional Loss - GPRC5C ENSG00000170412 CDS Human protein_coding chr17:72443056 chr17:72443058 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_59956 0 0 1 0 2 GPRC5C chr17:72442988 3'AG 72442988 Downstream 71bp
chr17 72443058 72443058 1 + C T SKCM 72443056 + 72443036 72443076 41 CAGGTGATGGGCAGTGCCAACTCGACCCTGCGGGCTGAAGA CAGGTGATGGGCAGTGCCAACTTGACCCTGCGGGCTGAAGA < 41bp 0.791687866637959 0.5217825037813 0.19449377 0.07093176 prediction 0.539810725713318 Functional Loss - GPRC5C ENSG00000170412 CDS Human protein_coding chr17:72443056 chr17:72443058 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_59956 0 0 1 0 2 GPRC5C chr17:72443137 5'GT 72443137 Upstream 80bp
chr6 43415131 43415131 1 + G T THYM 43415129 + 43415109 43415149 41 GTGACCTGCCCCAGGAACCCCAGGGCCAGCCACTGCAGGTG GTGACCTGCCCCAGGAACCCCATGGCCAGCCACTGCAGGTG < 41bp 0.769889016852457 0.413791643128483 0.90964454 0.17719191 prediction 0.539778033704914 Functional Loss - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43415129 chr6:43415131 nonsynonymous SNV 0.744 1 23 hm5C_associated_SNPs_59959 0 0 1 0 1 ABCC10 chr6:43415146 5'GT 43415146 Upstream 16bp
chr1 117552761 117552761 1 + C T SKCM 117552759 + 117552739 117552779 41 TCTTGTTGCACATCTCAAAACTCCAGATGAAGGATGCTGGC TCTTGTTGCACATCTCAAAACTTCAGATGAAGGATGCTGGC < 41bp 0.80871441920094 0.538834462576613 0.9099836 0.23644733 prediction 0.539759913248653 Functional Loss - CD101 ENSG00000134256 CDS Human protein_coding chr1:117552759 chr1:117552761 synonymous SNV . 0 23 hm5C_associated_SNPs_59960 0 0 0 0 1 CD101 chr1:117552852 5'GT 117552852 Upstream 92bp
chr8 17137583 17137583 1 + G T BRCA 17137580 + 17137560 17137600 41 ATGAACAAGAGGAGGTATTACTAGAACAGTTTCTGACTTTG ATGAACAAGAGGAGGTATTACTATAACAGTTTCTGACTTTG < 41bp 0.769874807074156 0.429101746177116 0.88003194 0.91523427 prediction 0.539749614148313 Functional Loss - VPS37A ENSG00000155975 CDS Human protein_coding chr8:17137580 chr8:17137583 stopgain 1.000 1 24 hm5C_associated_SNPs_59962 0 0 1 0 1 VPS37A chr8:17137664 5'GT 17137664 Upstream 82bp
chr6 42883782 42883782 1 + G T SARC 42883780 + 42883760 42883800 41 GCCGCAACTCAGGTCTGCAGCTGGGTCCTGCCTCCTTCCGA GCCGCAACTCAGGTCTGCAGCTTGGTCCTGCCTCCTTCCGA < 41bp 0.769869709410472 0.485345325554589 0.7883543 0.35640508 prediction 0.539739418820944 Functional Loss - PTCRA ENSG00000171611 UTR5 Human protein_coding chr6:42883780 chr6:42883782 . . 0 23 hm5C_associated_SNPs_59963 0 0 0 0 1 PTCRA chr6:42883865 5'GT 42883865 Upstream 84bp
chr11 27078840 27078840 1 + C T UCEC 27078838 + 27078818 27078858 41 CCAAGCAGGCCAGAGCAAAGCTCCAAAGAGAATTGTTTTTT CCAAGCAGGCCAGAGCAAAGCTTCAAAGAGAATTGTTTTTT < 41bp 0.801908442042576 0.532069566692782 0.8827648 0.1054109 prediction 0.539677750699588 Functional Loss - BBOX1 ENSG00000129151 CDS Human protein_coding chr11:27078838 chr11:27078840 synonymous SNV . 0 23 hm5C_associated_SNPs_59970 0 0 0 0 2 BBOX1 chr11:27078748 3'AG 27078748 Downstream 93bp
chr11 27078840 27078840 1 + C T UCEC 27078838 + 27078818 27078858 41 CCAAGCAGGCCAGAGCAAAGCTCCAAAGAGAATTGTTTTTT CCAAGCAGGCCAGAGCAAAGCTTCAAAGAGAATTGTTTTTT < 41bp 0.801908442042576 0.532069566692782 0.8827648 0.1054109 prediction 0.539677750699588 Functional Loss - BBOX1 ENSG00000129151 CDS Human protein_coding chr11:27078838 chr11:27078840 synonymous SNV . 0 23 hm5C_associated_SNPs_59970 0 0 0 0 2 BBOX1 chr11:27078862 5'GT 27078862 Upstream 23bp
chr12 57969018 57969018 1 + G T LUAD 57969016 + 57968996 57969036 41 CACCGCAAGATGGAAGTGACCGGGCGGGAGCTCTCATCCTG CACCGCAAGATGGAAGTGACCGTGCGGGAGCTCTCATCCTG < 41bp 0.882364040358265 0.612535003118668 0.92978007 0.49938354 prediction 0.539658074479194 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57969016 chr12:57969018 nonsynonymous SNV 0.928 2 23 hm5C_associated_SNPs_59972 0 0 1 0 1 KIF5A chr12:57969055 5'GT 57969055 Upstream 38bp
chr2 47044023 47044023 1 + G T UCEC 47044021 + 47044001 47044041 41 AAGAGGAGAGGGGAAACCCACAGGTGGAGCTGACCATGAGG AAGAGGAGAGGGGAAACCCACATGTGGAGCTGACCATGAGG < 41bp 0.855709027903873 0.585882658836405 0.8945943 0.48189643 prediction 0.539652738134935 Functional Loss - LINC01118 ENSG00000222005;ENSG00000239332 CDS Human other chr2:47044021 chr2:47044023 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_59974 0 0 0 0 1 LINC01118 chr2:47044051 5'GT 47044051 Upstream 29bp
chr19 41758269 41758269 1 + G T LIHC 41758266 + 41758246 41758286 41 CTCCCTCAAGTTGCCATCTGCACGAGGTCAGAGCTGGAGGA CTCCCTCAAGTTGCCATCTGCACTAGGTCAGAGCTGGAGGA < 41bp 0.769822303556379 0.376834075619999 0.54004925 0.22036561 prediction 0.539644607112757 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41758266 chr19:41758269 synonymous SNV . 0 24 hm5C_associated_SNPs_59975 0 0 0 0 2 AXL chr19:41758256 3'AG 41758256 Downstream 14bp
chr19 41758269 41758269 1 + G T LIHC 41758266 + 41758246 41758286 41 CTCCCTCAAGTTGCCATCTGCACGAGGTCAGAGCTGGAGGA CTCCCTCAAGTTGCCATCTGCACTAGGTCAGAGCTGGAGGA < 41bp 0.769822303556379 0.376834075619999 0.54004925 0.22036561 prediction 0.539644607112757 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41758266 chr19:41758269 synonymous SNV . 0 24 hm5C_associated_SNPs_59975 0 0 0 0 2 AXL chr19:41758348 5'GT 41758348 Upstream 80bp
chr11 8119342 8119342 1 + C T UCEC 8119340 + 8119320 8119360 41 TGTGGACCCAACAGACTTGTCTCGAGGAGGGGACAGCTATA TGTGGACCCAACAGACTTGTCTTGAGGAGGGGACAGCTATA < 41bp 0.819483563957751 0.549672135088892 0.8422056 0.21086949 prediction 0.539622857737717 Functional Loss - TUB ENSG00000166402 CDS Human protein_coding chr11:8119340 chr11:8119342 stopgain 1.000 1 23 hm5C_associated_SNPs_59977 0 0 1 0 2 TUB chr11:8119261 3'AG 8119261 Downstream 82bp
chr11 8119342 8119342 1 + C T UCEC 8119340 + 8119320 8119360 41 TGTGGACCCAACAGACTTGTCTCGAGGAGGGGACAGCTATA TGTGGACCCAACAGACTTGTCTTGAGGAGGGGACAGCTATA < 41bp 0.819483563957751 0.549672135088892 0.8422056 0.21086949 prediction 0.539622857737717 Functional Loss - TUB ENSG00000166402 CDS Human protein_coding chr11:8119340 chr11:8119342 stopgain 1.000 1 23 hm5C_associated_SNPs_59977 0 0 1 0 2 TUB chr11:8119373 5'GT 8119373 Upstream 32bp
chr19 49259640 49259640 1 + C T COAD 49259638 + 49259618 49259658 41 GCCAAGTCCGGCAGCGGTACCTCTACACAGATGATGCCCAG GCCAAGTCCGGCAGCGGTACCTTTACACAGATGATGCCCAG < 41bp 0.778409235136028 0.508604773982513 0.81152034 0.02867484 prediction 0.539608922307031 Functional Loss - FGF21 ENSG00000105550 CDS Human protein_coding chr19:49259638 chr19:49259640 synonymous SNV . 0 23 hm5C_associated_SNPs_59978 0 0 0 0 1 FGF21 chr19:49259728 5'GT 49259728 Upstream 89bp
chr5 139197092 139197092 1 + G T STAD 139197090 + 139197070 139197110 41 GAGTTTAGCAGGCTGGTGGCCGGGGAGTACCTCAGTTTCTT GAGTTTAGCAGGCTGGTGGCCGTGGAGTACCTCAGTTTCTT < 41bp 0.769801561896361 0.414621994577913 0.905999 0.36449152 prediction 0.539603123792723 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139197090 chr5:139197092 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_59979 0 0 0 0 2 PSD2 chr5:139197066 3'AG 139197066 Downstream 27bp
chr5 139197092 139197092 1 + G T STAD 139197090 + 139197070 139197110 41 GAGTTTAGCAGGCTGGTGGCCGGGGAGTACCTCAGTTTCTT GAGTTTAGCAGGCTGGTGGCCGTGGAGTACCTCAGTTTCTT < 41bp 0.769801561896361 0.414621994577913 0.905999 0.36449152 prediction 0.539603123792723 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139197090 chr5:139197092 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_59979 0 0 0 0 2 PSD2 chr5:139197146 5'GT 139197146 Upstream 55bp
chr17 38126776 38126776 1 + A C STAD 38126772 + 38126752 38126792 41 ACCCATTCCTGAAGGAGATGCAAGATCAAGGGGAGAACCTG ACCCATTCCTGAAGGAGATGCAAGCTCAAGGGGAGAACCTG < 41bp 0.769779404854743 0.365767204698912 0.1528478 0.2531207 prediction 0.539558809709486 Functional Loss - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38126772 chr17:38126776 nonsynonymous SNV 0.313 0 25 hm5C_associated_SNPs_59984 0 0 0 0 1 GSDMA chr17:38126735 3'AG 38126735 Downstream 42bp
chr20 31607499 31607499 1 + G T LUAD 31607496 + 31607476 31607516 41 ACCCTGCGGCTGCAGCCCTTCGTGGAGGTCCTGGCCACAGC ACCCTGCGGCTGCAGCCCTTCGTTGAGGTCCTGGCCACAGC < 41bp 0.769773380146241 0.372050218518159 0.5995285 0.11819139 prediction 0.539546760292481 Functional Loss - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31607496 chr20:31607499 synonymous SNV . 0 24 hm5C_associated_SNPs_59985 0 0 0 0 1 BPIFB2 chr20:31607556 5'GT 31607556 Upstream 58bp
chr9 133327632 133327632 1 + C T BLCA 133327630 + 133327610 133327650 41 GACGCTATGTCCAGCAAAGGCTCCGTGGTTCTGGCCTACAG GACGCTATGTCCAGCAAAGGCTTCGTGGTTCTGGCCTACAG < 41bp 0.7697711932547 0.497968778941955 0.16270334 0.04971713 prediction 0.5395423865094 Functional Loss - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133327630 chr9:133327632 nonsynonymous SNV 0.986 2 23 hm5C_associated_SNPs_59986 0 0 1 0 2 ASS1 chr9:133327611 3'AG 133327611 Downstream 22bp
chr9 133327632 133327632 1 + C T BLCA 133327630 + 133327610 133327650 41 GACGCTATGTCCAGCAAAGGCTCCGTGGTTCTGGCCTACAG GACGCTATGTCCAGCAAAGGCTTCGTGGTTCTGGCCTACAG < 41bp 0.7697711932547 0.497968778941955 0.16270334 0.04971713 prediction 0.5395423865094 Functional Loss - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133327630 chr9:133327632 nonsynonymous SNV 0.986 2 23 hm5C_associated_SNPs_59986 0 0 1 0 2 ASS1 chr9:133327720 5'GT 133327720 Upstream 89bp
chr1 67154887 67154887 1 + C T LUSC 67154885 + 67154865 67154905 41 GGTTCCTTGCAGAAGTACCACTCCACCTCCACCTCCTCCCC GGTTCCTTGCAGAAGTACCACTTCACCTCCACCTCCTCCCC < 41bp 0.807157256107251 0.537390407558639 0.8817005 0.051337212 prediction 0.539533697097225 Functional Loss - SGIP1 ENSG00000118473 CDS Human protein_coding chr1:67154885 chr1:67154887 nonsynonymous SNV 0.964 3 23 hm5C_associated_SNPs_59987 0 0 0 0 2 SGIP1 chr1:67154831 3'AG 67154831 Downstream 57bp
chr1 67154887 67154887 1 + C T LUSC 67154885 + 67154865 67154905 41 GGTTCCTTGCAGAAGTACCACTCCACCTCCACCTCCTCCCC GGTTCCTTGCAGAAGTACCACTTCACCTCCACCTCCTCCCC < 41bp 0.807157256107251 0.537390407558639 0.8817005 0.051337212 prediction 0.539533697097225 Functional Loss - SGIP1 ENSG00000118473 CDS Human protein_coding chr1:67154885 chr1:67154887 nonsynonymous SNV 0.964 3 23 hm5C_associated_SNPs_59987 0 0 0 0 2 SGIP1 chr1:67154958 5'GT 67154958 Upstream 72bp
chr12 7869650 7869650 1 + G T UCEC 7869647 + 7869627 7869667 41 AGAATGCTAGAATAGGGAATCAAGACACCAAGCCACTTCAG AGAATGCTAGAATAGGGAATCAATACACCAAGCCACTTCAG < 41bp 0.886741405730717 0.616975588474548 0.37172115 0.111245304 prediction 0.539531634512337 Functional Loss - DPPA3 ENSG00000187569 CDS Human protein_coding chr12:7869647 chr12:7869650 nonsynonymous SNV 0.000 3 24 hm5C_associated_SNPs_59988 0 0 0 0 1 DPPA3 chr12:7869563 3'AG 7869563 Downstream 88bp
chr15 44120487 44120487 1 + G T STAD 44120485 + 44120465 44120505 41 CAAGCTACAACCCAAGAGAACGGCAGATGCGATGAATCTCA CAAGCTACAACCCAAGAGAACGTCAGATGCGATGAATCTCA < 41bp 0.769758682973512 0.434520856565368 0.40006146 0.3861687 prediction 0.539517365947024 Functional Loss - WDR76 ENSG00000092470 CDS Human protein_coding chr15:44120485 chr15:44120487 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_59990 0 0 1 0 1 WDR76 chr15:44120564 5'GT 44120564 Upstream 78bp
chr2 1520727 1520727 1 + G T LIHC 1520724 + 1520704 1520744 41 TCTGCTGATCGGAGGCTTCGCAGGTCTCACCTCGACGGTGA TCTGCTGATCGGAGGCTTCGCAGTTCTCACCTCGACGGTGA < 41bp 0.769749612359896 0.380481944001095 0.87466866 0.2093642 prediction 0.539499224719792 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1520724 chr2:1520727 nonsynonymous SNV 0.116 0 24 hm5C_associated_SNPs_59991 0 0 0 0 2 TPO chr2:1520655 3'AG 1520655 Downstream 73bp
chr2 1520727 1520727 1 + G T LIHC 1520724 + 1520704 1520744 41 TCTGCTGATCGGAGGCTTCGCAGGTCTCACCTCGACGGTGA TCTGCTGATCGGAGGCTTCGCAGTTCTCACCTCGACGGTGA < 41bp 0.769749612359896 0.380481944001095 0.87466866 0.2093642 prediction 0.539499224719792 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1520724 chr2:1520727 nonsynonymous SNV 0.116 0 24 hm5C_associated_SNPs_59991 0 0 0 0 2 TPO chr2:1520754 5'GT 1520754 Upstream 28bp
chr5 140038573 140038573 1 + C T BLCA 140038571 + 140038551 140038591 41 ACCCTCCACAACCAAGACACCTCGGGACAAGGAGCGGGAGA ACCCTCCACAACCAAGACACCTTGGGACAAGGAGCGGGAGA < 41bp 0.786018322129937 0.516278956533433 0.035303414 0.044947833 prediction 0.539478731193008 Functional Loss - IK ENSG00000113141 CDS Human protein_coding chr5:140038571 chr5:140038573 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_59993 0 0 1 0 1 IK chr5:140038524 3'AG 140038524 Downstream 50bp
chr1 230338943 230338943 1 + C T SKCM 230338941 + 230338921 230338961 41 GTTGGAGGGACGATGGTCCGCTCCGGGCAGGACCCTTACGC GTTGGAGGGACGATGGTCCGCTTCGGGCAGGACCCTTACGC < 41bp 0.769738473300395 0.490879492411032 0.24645448 0.18108666 prediction 0.53947694660079 Functional Loss - GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230338941 chr1:230338943 nonsynonymous SNV 0.993 1 23 hm5C_associated_SNPs_59994 0 0 1 0 2 GALNT2 chr1:230338883 3'AG 230338883 Downstream 61bp
chr1 230338943 230338943 1 + C T SKCM 230338941 + 230338921 230338961 41 GTTGGAGGGACGATGGTCCGCTCCGGGCAGGACCCTTACGC GTTGGAGGGACGATGGTCCGCTTCGGGCAGGACCCTTACGC < 41bp 0.769738473300395 0.490879492411032 0.24645448 0.18108666 prediction 0.53947694660079 Functional Loss - GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230338941 chr1:230338943 nonsynonymous SNV 0.993 1 23 hm5C_associated_SNPs_59994 0 0 1 0 2 GALNT2 chr1:230339036 5'GT 230339036 Upstream 94bp
chr1 184023900 184023900 1 + G T READ 184023897 + 184023877 184023917 41 AAGTAAACTGTGTAGGATTACCAGAACTCCAGCTCATCTGC AAGTAAACTGTGTAGGATTACCATAACTCCAGCTCATCTGC < 41bp 0.769731325563105 0.397119856207165 0.113768876 0.04597357 prediction 0.539462651126211 Functional Loss - TSEN15 ENSG00000198860 CDS Human protein_coding chr1:184023897 chr1:184023900 stopgain 0.999 1 24 hm5C_associated_SNPs_59996 0 0 1 0 2 TSEN15 chr1:184023862 3'AG 184023862 Downstream 39bp
chr1 184023900 184023900 1 + G T READ 184023897 + 184023877 184023917 41 AAGTAAACTGTGTAGGATTACCAGAACTCCAGCTCATCTGC AAGTAAACTGTGTAGGATTACCATAACTCCAGCTCATCTGC < 41bp 0.769731325563105 0.397119856207165 0.113768876 0.04597357 prediction 0.539462651126211 Functional Loss - TSEN15 ENSG00000198860 CDS Human protein_coding chr1:184023897 chr1:184023900 stopgain 0.999 1 24 hm5C_associated_SNPs_59996 0 0 1 0 2 TSEN15 chr1:184023997 5'GT 184023997 Upstream 98bp
chr2 32865407 32865407 1 + C T UCEC 32865405 + 32865385 32865425 41 GAATCAATCTACAGCCTGACCTCGAAGCCTATACTACTGTT GAATCAATCTACAGCCTGACCTTGAAGCCTATACTACTGTT < 41bp 0.808513710940968 0.538783224114211 0.87860924 0.0795019 prediction 0.539460973653513 Functional Loss - TTC27 ENSG00000018699 CDS Human protein_coding chr2:32865405 chr2:32865407 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_59998 0 0 1 0 2 TTC27 chr2:32865337 3'AG 32865337 Downstream 71bp
chr2 32865407 32865407 1 + C T UCEC 32865405 + 32865385 32865425 41 GAATCAATCTACAGCCTGACCTCGAAGCCTATACTACTGTT GAATCAATCTACAGCCTGACCTTGAAGCCTATACTACTGTT < 41bp 0.808513710940968 0.538783224114211 0.87860924 0.0795019 prediction 0.539460973653513 Functional Loss - TTC27 ENSG00000018699 CDS Human protein_coding chr2:32865405 chr2:32865407 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_59998 0 0 1 0 2 TTC27 chr2:32865477 5'GT 32865477 Upstream 71bp
chr8 85441776 85441776 1 + G T LUSC 85441774 + 85441754 85441794 41 ACATGCAAGAGCTGCAGTGGCTGGAGAAAATGCCAGAGTCA ACATGCAAGAGCTGCAGTGGCTTGAGAAAATGCCAGAGTCA < 41bp 0.772004517617213 0.502277292281659 0.78974193 0.49073714 prediction 0.539454450671108 Functional Loss - RALYL ENSG00000184672 CDS Human protein_coding chr8:85441774 chr8:85441776 stopgain 1.000 1 23 hm5C_associated_SNPs_60002 0 0 0 0 1 RALYL chr8:85441812 5'GT 85441812 Upstream 37bp
chr13 114288278 114288278 1 + C T SKCM 114288276 + 114288256 114288296 41 CTAATGGCCATGAACATCATCTCCAAGGAGAAGAAGGAGAT CTAATGGCCATGAACATCATCTTCAAGGAGAAGAAGGAGAT < 41bp 0.769725509100314 0.466507271520454 0.9354595 0.045671374 prediction 0.539451018200628 Functional Loss - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114288276 chr13:114288278 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_60003 0 0 1 0 2 TFDP1 chr13:114288205 3'AG 114288205 Downstream 74bp
chr13 114288278 114288278 1 + C T SKCM 114288276 + 114288256 114288296 41 CTAATGGCCATGAACATCATCTCCAAGGAGAAGAAGGAGAT CTAATGGCCATGAACATCATCTTCAAGGAGAAGAAGGAGAT < 41bp 0.769725509100314 0.466507271520454 0.9354595 0.045671374 prediction 0.539451018200628 Functional Loss - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114288276 chr13:114288278 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_60003 0 0 1 0 2 TFDP1 chr13:114288348 5'GT 114288348 Upstream 71bp
chr14 23846561 23846561 1 + A T LUAD 23846557 + 23846537 23846577 41 ACAAGGCCTTCCTCACCTCCCACAAGGGCATCCTGCTGGAA ACAAGGCCTTCCTCACCTCCCACATGGGCATCCTGCTGGAA < 41bp 0.769723530126374 0.446468265598179 0.19378889 0.2639019 prediction 0.539447060252747 Functional Loss - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23846557 chr14:23846561 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_60004 0 0 0 1 1 CMTM5 chr14:23846586 5'GT 23846586 Upstream 26bp
chr2 99226258 99226258 1 + G T UCEC 99226256 + 99226236 99226276 41 CTTCAGTGAATTCCTTAGTGCAGGGGAACGGAGTCTTGAAT CTTCAGTGAATTCCTTAGTGCATGGGAACGGAGTCTTGAAT < 41bp 0.769720551049734 0.436843236123313 0.8992234 0.41930085 prediction 0.539441102099468 Functional Loss - UNC50 ENSG00000115446 CDS Human protein_coding chr2:99226256 chr2:99226258 nonsynonymous SNV 0.717 0 23 hm5C_associated_SNPs_60005 0 0 1 0 1 UNC50 chr2:99226219 3'AG 99226219 Downstream 40bp
chr20 31763343 31763343 1 + A C rs142661634 31763339 + 31763319 31763359 41 GAATGCGCCAGTGACCCAACCAGCATCTCACTTTCCTTGCT GAATGCGCCAGTGACCCAACCAGCCTCTCACTTTCCTTGCT < 41bp 0.769658044840359 0.363233722345521 0.3514731 0.28361607 prediction 0.539316089680718 Functional Loss - BPIFA2 ENSG00000131050 CDS Human protein_coding chr20:31763339 chr20:31763343 nonsynonymous SNV 0.012 1 25 hm5C_associated_SNPs_60012 0 0 0 0 1 BPIFA2 chr20:31763365 5'GT 31763365 Upstream 23bp
chr2 241631679 241631679 1 + G C LUAD 241631678 + 241631658 241631698 41 TGGCACGCTGTTGAAGCTGGCGGCACAGGGGCTGGGCATGC TGGCACGCTGTTGAAGCTGGCCGCACAGGGGCTGGGCATGC < 41bp 0.832613294773823 0.562960323479703 0.8180373 0.060643524 prediction 0.53930594258824 Functional Loss - AQP12A ENSG00000184945 CDS Human protein_coding chr2:241631678 chr2:241631679 synonymous SNV . 0 22 hm5C_associated_SNPs_60013 0 0 0 0 1 AQP12A chr2:241631629 3'AG 241631629 Downstream 51bp
chr4 187177230 187177230 1 + C T COAD 187177228 + 187177208 187177248 41 TGGGTAACCGGATGGGGCTTCTCGAAGGAGAAAGGTAAGCA TGGGTAACCGGATGGGGCTTCTTGAAGGAGAAAGGTAAGCA < 41bp 0.769640373222498 0.486850402783004 0.9077059 0.3148461 prediction 0.539280746444996 Functional Loss - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187177228 chr4:187177230 nonsynonymous SNV 0.773 1 23 hm5C_associated_SNPs_60014 0 0 0 0 2 KLKB1 chr4:187177146 3'AG 187177146 Downstream 85bp
chr4 187177230 187177230 1 + C T COAD 187177228 + 187177208 187177248 41 TGGGTAACCGGATGGGGCTTCTCGAAGGAGAAAGGTAAGCA TGGGTAACCGGATGGGGCTTCTTGAAGGAGAAAGGTAAGCA < 41bp 0.769640373222498 0.486850402783004 0.9077059 0.3148461 prediction 0.539280746444996 Functional Loss - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187177228 chr4:187177230 nonsynonymous SNV 0.773 1 23 hm5C_associated_SNPs_60014 0 0 0 0 2 KLKB1 chr4:187177241 5'GT 187177241 Upstream 12bp
chr1 11254941 11254941 1 + C T SKCM 11254939 + 11254919 11254959 41 TGGTACAACTGCTGCACAGACTCCAACCTCAATGGAGTGTA TGGTACAACTGCTGCACAGACTTCAACCTCAATGGAGTGTA < 41bp 0.790841971941352 0.521202004547802 0.9417812 0.16815147 prediction 0.5392799347871 Functional Loss - ANGPTL7 ENSG00000171819 CDS Human protein_coding chr1:11254939 chr1:11254941 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_60015 0 0 0 0 1 ANGPTL7 chr1:11254911 3'AG 11254911 Downstream 31bp
chr17 8170432 8170432 1 + G T UCEC 8170430 + 8170410 8170450 41 GGGAGGAGACGAGTTTCCAGCTGGACCGGCTACAGGCAGAG GGGAGGAGACGAGTTTCCAGCTTGACCGGCTACAGGCAGAG < 41bp 0.866856391576251 0.597241054856807 0.42887086 0.24070841 prediction 0.539230673438888 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8170430 chr17:8170432 synonymous SNV . 0 23 hm5C_associated_SNPs_60021 0 0 1 0 1 PFAS chr17:8170346 3'AG 8170346 Downstream 87bp
chr20 61941827 61941827 1 + G T BLCA 61941825 + 61941805 61941845 41 GTGTTCCCCATCTATGAGGGCGGGGTTGGCGAAGGCCTGCG GTGTTCCCCATCTATGAGGGCGTGGTTGGCGAAGGCCTGCG < 41bp 0.769614054203006 0.417225087447941 0.88973784 0.35048592 prediction 0.539228108406012 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61941825 chr20:61941827 nonsynonymous SNV 0.014 1 23 hm5C_associated_SNPs_60022 0 0 0 0 2 COL20A1 chr20:61941733 3'AG 61941733 Downstream 95bp
chr20 61941827 61941827 1 + G T BLCA 61941825 + 61941805 61941845 41 GTGTTCCCCATCTATGAGGGCGGGGTTGGCGAAGGCCTGCG GTGTTCCCCATCTATGAGGGCGTGGTTGGCGAAGGCCTGCG < 41bp 0.769614054203006 0.417225087447941 0.88973784 0.35048592 prediction 0.539228108406012 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61941825 chr20:61941827 nonsynonymous SNV 0.014 1 23 hm5C_associated_SNPs_60022 0 0 0 0 2 COL20A1 chr20:61941862 5'GT 61941862 Upstream 36bp
chrX 135290072 135290072 1 + G T LUAD 135290069 + 135290049 135290089 41 AAAGGGGAGGACTTCTACTGCGTGACTTGCCATGAGACCAA AAAGGGGAGGACTTCTACTGCGTTACTTGCCATGAGACCAA < 41bp 0.769608266408447 0.413317039054032 0.16713905 0.114833176 prediction 0.539216532816893 Functional Loss - FHL1 ENSG00000022267 CDS Human protein_coding chrX:135290069 chrX:135290072 synonymous SNV . 0 24 hm5C_associated_SNPs_60023 0 0 1 0 1 FHL1 chrX:135290120 5'GT 135290120 Upstream 49bp
chr11 65048613 65048613 1 + G T GBM 65048611 + 65048591 65048631 41 TAAGGAATATTCTCTGTTTCCTGGACAGGTGAGATTGGAGG TAAGGAATATTCTCTGTTTCCTTGACAGGTGAGATTGGAGG < 41bp 0.769605792869598 0.442491785369634 0.23643464 0.20050085 prediction 0.539211585739196 Functional Loss - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65048611 chr11:65048613 stopgain 0.995 1 23 hm5C_associated_SNPs_60024 0 0 1 0 1 POLA2 chr11:65048618 5'GT 65048618 Upstream 6bp
chr11 65048614 65048614 1 + G T SARC 65048611 + 65048591 65048631 41 TAAGGAATATTCTCTGTTTCCTGGACAGGTGAGATTGGAGG TAAGGAATATTCTCTGTTTCCTGTACAGGTGAGATTGGAGG < 41bp 0.769605792869598 0.392552889347332 0.23643464 0.14138213 prediction 0.539211585739196 Functional Loss - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65048611 chr11:65048614 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_60025 0 0 1 0 1 POLA2 chr11:65048618 5'GT 65048618 Upstream 5bp
chr17 53345192 53345192 1 + G T LUSC 53345189 + 53345169 53345209 41 CGGTCCCCCAGTCGGCATTCCTGGGGCCTACCTTATGGGAC CGGTCCCCCAGTCGGCATTCCTGTGGCCTACCTTATGGGAC < 41bp 0.769602739293715 0.370300710320724 0.9072173 0.29194087 prediction 0.53920547858743 Functional Loss - HLF ENSG00000108924 CDS Human protein_coding chr17:53345189 chr17:53345192 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_60026 0 0 0 0 1 HLF chr17:53345112 3'AG 53345112 Downstream 81bp
chr14 94582203 94582203 1 + G T PAAD 94582200 + 94582180 94582220 41 GCCTCGTCCTCCATAGCAGCCAAGATGATGTCCGCGGCGGC GCCTCGTCCTCCATAGCAGCCAATATGATGTCCGCGGCGGC < 41bp 0.905684296479977 0.636089539450337 0.78101695 0.2118243 prediction 0.539189514059281 Functional Loss - IFI27 ENSG00000165949 CDS Human protein_coding chr14:94582200 chr14:94582203 nonsynonymous SNV 0.018 2 24 hm5C_associated_SNPs_60029 0 0 0 0 1 IFI27 chr14:94582127 3'AG 94582127 Downstream 77bp
chr9 129975264 129975264 1 + G T LUAD 129975261 + 129975241 129975281 41 AAAAAGGTTTCCATCGTGGGCTGGATGGTGCAGCTGCCCGA AAAAAGGTTTCCATCGTGGGCTGTATGGTGCAGCTGCCCGA < 41bp 0.769586580013532 0.394515212692671 0.037954748 0.031804055 prediction 0.539173160027064 Functional Loss - RALGPS1 ENSG00000136828 CDS Human protein_coding chr9:129975261 chr9:129975264 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_60030 0 0 0 0 3 RALGPS1 chr9:129975223 3'AG 129975223 Downstream 42bp
chr9 129975264 129975264 1 + G T LUAD 129975261 + 129975241 129975281 41 AAAAAGGTTTCCATCGTGGGCTGGATGGTGCAGCTGCCCGA AAAAAGGTTTCCATCGTGGGCTGTATGGTGCAGCTGCCCGA < 41bp 0.769586580013532 0.394515212692671 0.037954748 0.031804055 prediction 0.539173160027064 Functional Loss - RALGPS1 ENSG00000136828 CDS Human protein_coding chr9:129975261 chr9:129975264 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_60030 0 0 0 0 3 RALGPS1 chr9:129975247 3'AG 129975247 Downstream 18bp
chr9 129975264 129975264 1 + G T LUAD 129975261 + 129975241 129975281 41 AAAAAGGTTTCCATCGTGGGCTGGATGGTGCAGCTGCCCGA AAAAAGGTTTCCATCGTGGGCTGTATGGTGCAGCTGCCCGA < 41bp 0.769586580013532 0.394515212692671 0.037954748 0.031804055 prediction 0.539173160027064 Functional Loss - RALGPS1 ENSG00000136828 CDS Human protein_coding chr9:129975261 chr9:129975264 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_60030 0 0 0 0 3 RALGPS1 chr9:129975328 5'GT 129975328 Upstream 65bp
chr6 129204407 129204407 1 + G T OV 129204405 + 129204385 129204425 41 ACTACGATGCCGGGAGCCGCCGGGGTCCTCCTCCTTCTGCT ACTACGATGCCGGGAGCCGCCGTGGTCCTCCTCCTTCTGCT < 41bp 0.795613702337241 0.526027464492808 0.94230735 0.9012033 prediction 0.539172475688865 Functional Loss - LAMA2 ENSG00000196569 CDS Human protein_coding chr6:129204405 chr6:129204407 nonsynonymous SNV 0.031 0 23 hm5C_associated_SNPs_60032 0 0 0 0 1 LAMA2 chr6:129204502 5'GT 129204502 Upstream 96bp
chr3 119328400 119328400 1 + G T LGG 119328398 + 119328378 119328418 41 GGCATGGTGGGACAGCTCTTCGGAGGCCAGCTGGGACAGAT GGCATGGTGGGACAGCTCTTCGTAGGCCAGCTGGGACAGAT < 41bp 0.877272063309212 0.607693598995424 0.90827584 0.8293227 prediction 0.539156928627576 Functional Loss - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119328398 chr3:119328400 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_60036 0 0 0 0 2 PLA1A chr3:119328315 3'AG 119328315 Downstream 86bp
chr3 119328400 119328400 1 + G T LGG 119328398 + 119328378 119328418 41 GGCATGGTGGGACAGCTCTTCGGAGGCCAGCTGGGACAGAT GGCATGGTGGGACAGCTCTTCGTAGGCCAGCTGGGACAGAT < 41bp 0.877272063309212 0.607693598995424 0.90827584 0.8293227 prediction 0.539156928627576 Functional Loss - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119328398 chr3:119328400 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_60036 0 0 0 0 2 PLA1A chr3:119328423 5'GT 119328423 Upstream 24bp
chr17 80010250 80010250 1 + G T SARC 80010248 + 80010228 80010268 41 GATCTGTACTGCACCCCTCACAGCAGTAGGTCAGACCTCGT GATCTGTACTGCACCCCTCACATCAGTAGGTCAGACCTCGT < 41bp 0.854539354146499 0.584972980493873 0.85499907 0.3279616 prediction 0.539132747305251 Functional Loss - GPS1;GPS1 ENSG00000169727;ENSG00000169727 exonic;splicing Human protein_coding chr17:80010248 chr17:80010250 nonsynonymous SNV 0.282 1 23 hm5C_associated_SNPs_60038 0 0 1 0 1 GPS1 chr17:80010335 5'GT 80010335 Upstream 86bp
chrX 10174530 10174530 1 + G T LUSC 10174527 + 10174507 10174547 41 GGAAGGAAGGGCCGCTAGTGCACGTGGCTTGTTGCTGTGGC GGAAGGAAGGGCCGCTAGTGCACTTGGCTTGTTGCTGTGGC < 41bp 0.769563548964237 0.3728900534709 0.6506387 0.08578092 prediction 0.539127097928474 Functional Loss - CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10174527 chrX:10174530 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_60040 0 0 0 0 1 CLCN4 chrX:10174604 5'GT 10174604 Upstream 75bp
chrX 48759277 48759277 1 + G C BLCA 48759276 + 48759256 48759296 41 TCCCCACATGACCCCAACTCCGTGGTTACCAAATCGGCCAA TCCCCACATGACCCCAACTCCCTGGTTACCAAATCGGCCAA < 41bp 0.769548753686886 0.484382510908325 0.8613395 0.26710618 prediction 0.539097507373773 Functional Loss - PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759276 chrX:48759277 nonsynonymous SNV 0.747 1 22 hm5C_associated_SNPs_60042 0 0 1 0 2 PQBP1 chrX:48759207 3'AG 48759207 Downstream 71bp
chrX 48759277 48759277 1 + G C BLCA 48759276 + 48759256 48759296 41 TCCCCACATGACCCCAACTCCGTGGTTACCAAATCGGCCAA TCCCCACATGACCCCAACTCCCTGGTTACCAAATCGGCCAA < 41bp 0.769548753686886 0.484382510908325 0.8613395 0.26710618 prediction 0.539097507373773 Functional Loss - PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759276 chrX:48759277 nonsynonymous SNV 0.747 1 22 hm5C_associated_SNPs_60042 0 0 1 0 2 PQBP1 chrX:48759319 5'GT 48759319 Upstream 43bp
chr1 160165267 160165267 1 + G T COAD 160165264 + 160165244 160165284 41 CCCCCAGATTACAAAGCCTTCGAGGATGCAGCTGAGGAGTT CCCCCAGATTACAAAGCCTTCGATGATGCAGCTGAGGAGTT < 41bp 0.769538654437282 0.378526773731785 0.21937534 0.016170055 prediction 0.539077308874564 Functional Loss - CASQ1 ENSG00000143318 CDS Human protein_coding chr1:160165264 chr1:160165267 nonsynonymous SNV 0.948 1 24 hm5C_associated_SNPs_60043 0 0 0 0 2 CASQ1 chr1:160165251 3'AG 160165251 Downstream 17bp
chr1 160165267 160165267 1 + G T COAD 160165264 + 160165244 160165284 41 CCCCCAGATTACAAAGCCTTCGAGGATGCAGCTGAGGAGTT CCCCCAGATTACAAAGCCTTCGATGATGCAGCTGAGGAGTT < 41bp 0.769538654437282 0.378526773731785 0.21937534 0.016170055 prediction 0.539077308874564 Functional Loss - CASQ1 ENSG00000143318 CDS Human protein_coding chr1:160165264 chr1:160165267 nonsynonymous SNV 0.948 1 24 hm5C_associated_SNPs_60043 0 0 0 0 2 CASQ1 chr1:160165324 5'GT 160165324 Upstream 58bp
chr1 170521193 170521193 1 + G T LUAD 170521191 + 170521171 170521211 41 GGCTGAAGCAGAGTACATTGCAGCAAAGCTAGATATACAGC GGCTGAAGCAGAGTACATTGCATCAAAGCTAGATATACAGC < 41bp 0.846012954361427 0.576477354295261 0.11288983 0.08120236 prediction 0.539071200132331 Functional Loss - GORAB ENSG00000120370 CDS Human protein_coding chr1:170521191 chr1:170521193 nonsynonymous SNV 0.758 3 23 hm5C_associated_SNPs_60045 0 0 0 0 1 GORAB chr1:170521156 3'AG 170521156 Downstream 38bp
chr19 17883333 17883333 1 + C T STAD 17883331 + 17883311 17883351 41 CTGCTGGGCTCATATGCTCACTCGGTGGAGGACACGCACGT CTGCTGGGCTCATATGCTCACTTGGTGGAGGACACGCACGT < 41bp 0.776040567162979 0.506512354290654 0.044840127 0.04857993 prediction 0.53905642574465 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17883331 chr19:17883333 nonsynonymous SNV 0.263 3 23 hm5C_associated_SNPs_60048 0 0 0 0 2 FCHO1 chr19:17883266 3'AG 17883266 Downstream 68bp
chr19 17883333 17883333 1 + C T STAD 17883331 + 17883311 17883351 41 CTGCTGGGCTCATATGCTCACTCGGTGGAGGACACGCACGT CTGCTGGGCTCATATGCTCACTTGGTGGAGGACACGCACGT < 41bp 0.776040567162979 0.506512354290654 0.044840127 0.04857993 prediction 0.53905642574465 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17883331 chr19:17883333 nonsynonymous SNV 0.263 3 23 hm5C_associated_SNPs_60048 0 0 0 0 2 FCHO1 chr19:17883364 5'GT 17883364 Upstream 32bp
chr16 73127108 73127108 1 + G T UCEC 73127106 + 73127086 73127126 41 TCTGGACGACCACGCGCATGCAGAGGTAAGGGAATGATCCG TCTGGACGACCACGCGCATGCATAGGTAAGGGAATGATCCG < 41bp 0.858909624899119 0.589392146715299 0.92610705 0.7267445 prediction 0.539034956367641 Functional Loss - HCCAT5 ENSG00000260880 ncRNA_exonic Human lincRNA chr16:73127106 chr16:73127108 . . 0 23 hm5C_associated_SNPs_60049 0 0 0 0 1 HCCAT5 chr16:73127110 5'GT 73127110 Upstream 3bp
chr1 228003884 228003884 1 + G T LUAD 228003881 + 228003861 228003901 41 GCAGGTCAGCGTGCACTACGCAGGCCTCCACGTCTGCGGCG GCAGGTCAGCGTGCACTACGCAGTCCTCCACGTCTGCGGCG < 41bp 0.909785998849713 0.640273631312753 0.853517 0.28048867 prediction 0.539024735073919 Functional Loss - PRSS38 ENSG00000185888 CDS Human protein_coding chr1:228003881 chr1:228003884 nonsynonymous SNV 0.027 4 24 hm5C_associated_SNPs_60051 0 0 0 0 2 PRSS38 chr1:228003791 3'AG 228003791 Downstream 94bp
chr1 228003884 228003884 1 + G T LUAD 228003881 + 228003861 228003901 41 GCAGGTCAGCGTGCACTACGCAGGCCTCCACGTCTGCGGCG GCAGGTCAGCGTGCACTACGCAGTCCTCCACGTCTGCGGCG < 41bp 0.909785998849713 0.640273631312753 0.853517 0.28048867 prediction 0.539024735073919 Functional Loss - PRSS38 ENSG00000185888 CDS Human protein_coding chr1:228003881 chr1:228003884 nonsynonymous SNV 0.027 4 24 hm5C_associated_SNPs_60051 0 0 0 0 2 PRSS38 chr1:228003953 5'GT 228003953 Upstream 70bp
chr7 114563533 114563533 1 + G T rs114914901 114563530 + 114563510 114563550 41 CTAGGTCTCTTCAGCAGATCCAGGACTGCCGCAGCTCTCTG CTAGGTCTCTTCAGCAGATCCAGTACTGCCGCAGCTCTCTG < 41bp 0.769493070002782 0.386235434376229 0.72264504 0.31450057 prediction 0.538986140005564 Functional Loss - MDFIC ENSG00000135272 CDS Human protein_coding chr7:114563530 chr7:114563533 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_60054 0 0 0 0 1 MDFIC chr7:114563514 3'AG 114563514 Downstream 20bp
chr10 127442353 127442353 1 + C T PAAD 127442351 + 127442331 127442371 41 ACTCCTCAGTATATTTGAGTCTCGGTTGTCATTTCTTCTCC ACTCCTCAGTATATTTGAGTCTTGGTTGTCATTTCTTCTCC < 41bp 0.769487058888918 0.498791796886977 0.31003922 0.3462572 prediction 0.538974117777836 Functional Loss - EDRF1 ENSG00000107938 CDS Human protein_coding chr10:127442351 chr10:127442353 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_60055 0 0 1 0 2 EDRF1 chr10:127442263 3'AG 127442263 Downstream 91bp
chr10 127442353 127442353 1 + C T PAAD 127442351 + 127442331 127442371 41 ACTCCTCAGTATATTTGAGTCTCGGTTGTCATTTCTTCTCC ACTCCTCAGTATATTTGAGTCTTGGTTGTCATTTCTTCTCC < 41bp 0.769487058888918 0.498791796886977 0.31003922 0.3462572 prediction 0.538974117777836 Functional Loss - EDRF1 ENSG00000107938 CDS Human protein_coding chr10:127442351 chr10:127442353 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_60055 0 0 1 0 2 EDRF1 chr10:127442414 5'GT 127442414 Upstream 62bp
chr16 31092997 31092997 1 + G T COAD 31092995 + 31092975 31093015 41 TGCAGCACCAGCAGCAGCACCAGGAGGAGTGGACGGTGGCC TGCAGCACCAGCAGCAGCACCATGAGGAGTGGACGGTGGCC < 41bp 0.769476008515836 0.442648319647302 0.90660477 0.3645267 prediction 0.538952017031672 Functional Loss - ZNF646 ENSG00000167395 CDS Human protein_coding chr16:31092995 chr16:31092997 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_60056 0 0 0 0 1 ZNF646 chr16:31093022 5'GT 31093022 Upstream 26bp
chr1 154516451 154516451 1 + G T OV 154516449 + 154516429 154516469 41 CTTCCCGCAGAGGGTCCTTCCTGGTGCTGCTCCTGAGGGAA CTTCCCGCAGAGGGTCCTTCCTTGTGCTGCTCCTGAGGGAA < 41bp 0.76946371933316 0.418935135696725 0.3018053 0.09067273 prediction 0.538927438666321 Functional Loss - TDRD10 ENSG00000163239 CDS Human protein_coding chr1:154516449 chr1:154516451 synonymous SNV . 0 23 hm5C_associated_SNPs_60058 0 0 0 0 1 TDRD10 chr1:154516439 3'AG 154516439 Downstream 13bp
chr22 20113863 20113863 1 + G T COAD 20113860 + 20113840 20113880 41 AAAACAAAGTTTGAAGAATGCAGGAAAGAGATCGAAGAGAG AAAACAAAGTTTGAAGAATGCAGTAAAGAGATCGAAGAGAG < 41bp 0.895777553173049 0.626315088114902 0.2630693 0.07192859 prediction 0.538924930116293 Functional Loss - RANBP1 ENSG00000099901 CDS Human protein_coding chr22:20113860 chr22:20113863 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_60060 0 0 1 0 1 RANBP1 chr22:20113826 3'AG 20113826 Downstream 38bp
chr7 87436725 87436725 1 + G T UCEC 87436722 + 87436702 87436742 41 ATAATGATTTAAGATCGAGACAAGAGTTAACTGCCCATCTC ATAATGATTTAAGATCGAGACAATAGTTAACTGCCCATCTC < 41bp 0.769451698683607 0.409936190015035 0.17970753 0.049259752 prediction 0.538903397367215 Functional Loss - RUNDC3B ENSG00000105784 CDS Human protein_coding chr7:87436722 chr7:87436725 stopgain 1.000 1 24 hm5C_associated_SNPs_60061 0 0 0 0 1 RUNDC3B chr7:87436688 3'AG 87436688 Downstream 38bp
chrX 37670135 37670135 1 + G T LUAD 37670132 + 37670112 37670152 41 CCAACTCTGAGTCTGGCCCTCGGGGAGTGCATTTCATTTTC CCAACTCTGAGTCTGGCCCTCGGTGAGTGCATTTCATTTTC < 41bp 0.769450593730604 0.388550064801125 0.9479673 0.3169816 prediction 0.538901187461208 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37670132 chrX:37670135 stopgain 1.000 1 24 hm5C_associated_SNPs_60062 0 0 0 0 1 CYBB chrX:37670044 3'AG 37670044 Downstream 92bp
chr2 131103658 131103658 1 + C T PRAD 131103656 + 131103636 131103676 41 AGCCACCGGGTCATCACCTTCGCAAACCAGGACGACTACAT AGCCACCGGGTCATCACCTTCGTAAACCAGGACGACTACAT < 41bp 0.785215179083669 0.515766445554539 0.2733139 0.35922468 prediction 0.538897467058259 Functional Loss - IMP4 ENSG00000136718 CDS Human protein_coding chr2:131103656 chr2:131103658 nonsynonymous SNV 0.956 1 23 hm5C_associated_SNPs_60063 0 0 1 0 2 IMP4 chr2:131103591 3'AG 131103591 Downstream 68bp
chr2 131103658 131103658 1 + C T PRAD 131103656 + 131103636 131103676 41 AGCCACCGGGTCATCACCTTCGCAAACCAGGACGACTACAT AGCCACCGGGTCATCACCTTCGTAAACCAGGACGACTACAT < 41bp 0.785215179083669 0.515766445554539 0.2733139 0.35922468 prediction 0.538897467058259 Functional Loss - IMP4 ENSG00000136718 CDS Human protein_coding chr2:131103656 chr2:131103658 nonsynonymous SNV 0.956 1 23 hm5C_associated_SNPs_60063 0 0 1 0 2 IMP4 chr2:131103685 5'GT 131103685 Upstream 28bp
chr10 95395343 95395343 1 + G T UCEC 95395341 + 95395321 95395361 41 AAAACAGAAAGGACATTGCTCAGGAAATGCTCATGAACCAA AAAACAGAAAGGACATTGCTCATGAAATGCTCATGAACCAA < 41bp 0.769439004176137 0.452577707493954 0.44193333 0.09098986 prediction 0.538878008352274 Functional Loss - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95395341 chr10:95395343 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_60065 0 0 0 0 2 PDE6C chr10:95395254 3'AG 95395254 Downstream 90bp
chr10 95395343 95395343 1 + G T UCEC 95395341 + 95395321 95395361 41 AAAACAGAAAGGACATTGCTCAGGAAATGCTCATGAACCAA AAAACAGAAAGGACATTGCTCATGAAATGCTCATGAACCAA < 41bp 0.769439004176137 0.452577707493954 0.44193333 0.09098986 prediction 0.538878008352274 Functional Loss - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95395341 chr10:95395343 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_60065 0 0 0 0 2 PDE6C chr10:95395397 5'GT 95395397 Upstream 55bp
chr1 229438699 229438699 1 + C T HNSC 229438697 + 229438677 229438717 41 TCACCGCGGCGCGCACAGGCCCCGAACGCTCAGGAGTGTGG TCACCGCGGCGCGCACAGGCCCTGAACGCTCAGGAGTGTGG < 41bp 0.76943575848047 0.495190654637682 0.01740256 0.023478627 prediction 0.538871516960939 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229438697 chr1:229438699 nonsynonymous SNV 0.187 1 23 hm5C_associated_SNPs_60066 0 0 1 0 2 RAB4A chr1:229438609 3'AG 229438609 Downstream 91bp
chr1 229438699 229438699 1 + C T HNSC 229438697 + 229438677 229438717 41 TCACCGCGGCGCGCACAGGCCCCGAACGCTCAGGAGTGTGG TCACCGCGGCGCGCACAGGCCCTGAACGCTCAGGAGTGTGG < 41bp 0.76943575848047 0.495190654637682 0.01740256 0.023478627 prediction 0.538871516960939 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229438697 chr1:229438699 nonsynonymous SNV 0.187 1 23 hm5C_associated_SNPs_60066 0 0 1 0 2 RAB4A chr1:229438736 5'GT 229438736 Upstream 38bp
chr17 7577143 7577143 1 - C A HNSC 7577145 - 7577125 7577165 41 TCCTGAGTAGTGGTAATCTACTGGGACGGAACAGCTTTGAG TCCTGAGTAGTGGTAATCTACTTGGACGGAACAGCTTTGAG < 41bp 0.822440274171148 0.553020149810722 0.15240294 0.07381025 prediction 0.538840248720853 Functional Loss - TP53 ENSG00000141510 CDS Human protein_coding chr17:7577145 chr17:7577143 synonymous SNV . 0 23 hm5C_associated_SNPs_60069 0 0 1 0 1 TP53 chr17:7577155 3'AG 7577155 Downstream 13bp
chr1 41285134 41285134 1 + G T LUSC 41285132 + 41285112 41285152 41 TCCTCCTACGCCGACTCGCTCTGGTGGGGGACGGTGCGTGA TCCTCCTACGCCGACTCGCTCTTGTGGGGGACGGTGCGTGA < 41bp 0.769416925211555 0.424556621611807 0.35579798 0.106837034 prediction 0.538833850423109 Functional Loss - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41285132 chr1:41285134 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_60070 0 0 0 0 1 KCNQ4 chr1:41285144 5'GT 41285144 Upstream 11bp
chr10 70967668 70967668 1 + C T UCEC 70967666 + 70967646 70967686 41 TCATGGATCTTGAAGCTGTCCACGATGTCTTGGATCTTTAC TCATGGATCTTGAAGCTGTCCATGATGTCTTGGATCTTTAC < 41bp 0.791730478603958 0.522316986355272 0.03987041 0.025459975 prediction 0.538826984497372 Functional Loss - SUPV3L1 ENSG00000156502 CDS Human protein_coding chr10:70967666 chr10:70967668 synonymous SNV . 0 23 hm5C_associated_SNPs_60071 0 0 1 0 1 SUPV3L1 chr10:70967697 5'GT 70967697 Upstream 30bp
chr15 81595960 81595960 1 + G T COAD 81595957 + 81595937 81595977 41 TGGTCTTGGGTTCAGCTTGGCAGGAGGAGCAGATCTAGAAA TGGTCTTGGGTTCAGCTTGGCAGTAGGAGCAGATCTAGAAA < 41bp 0.769406874153496 0.399714721727007 0.8747699 0.33499715 prediction 0.538813748306991 Functional Loss - IL16 ENSG00000172349 CDS Human protein_coding chr15:81595957 chr15:81595960 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_60072 0 0 0 0 2 IL16 chr15:81595890 3'AG 81595890 Downstream 71bp
chr15 81595960 81595960 1 + G T COAD 81595957 + 81595937 81595977 41 TGGTCTTGGGTTCAGCTTGGCAGGAGGAGCAGATCTAGAAA TGGTCTTGGGTTCAGCTTGGCAGTAGGAGCAGATCTAGAAA < 41bp 0.769406874153496 0.399714721727007 0.8747699 0.33499715 prediction 0.538813748306991 Functional Loss - IL16 ENSG00000172349 CDS Human protein_coding chr15:81595957 chr15:81595960 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_60072 0 0 0 0 2 IL16 chr15:81595991 5'GT 81595991 Upstream 32bp
chr11 379949 379949 1 + G C rs201943669 379945 + 379925 379965 41 CGCACCGGGGACTCGCGTTTCAGCGTCGTCCTGGTGGATTT CGCACCGGGGACTCGCGTTTCAGCCTCGTCCTGGTGGATTT < 41bp 0.791481736070342 0.522081197049553 0.8816493 0.2851869 prediction 0.538801078041579 Functional Loss - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:379945 chr11:379949 nonsynonymous SNV 0.830 0 25 hm5C_associated_SNPs_60074 0 0 0 0 2 B4GALNT4 chr11:379866 3'AG 379866 Downstream 84bp
chr11 379949 379949 1 + G C rs201943669 379945 + 379925 379965 41 CGCACCGGGGACTCGCGTTTCAGCGTCGTCCTGGTGGATTT CGCACCGGGGACTCGCGTTTCAGCCTCGTCCTGGTGGATTT < 41bp 0.791481736070342 0.522081197049553 0.8816493 0.2851869 prediction 0.538801078041579 Functional Loss - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:379945 chr11:379949 nonsynonymous SNV 0.830 0 25 hm5C_associated_SNPs_60074 0 0 0 0 2 B4GALNT4 chr11:380019 5'GT 380019 Upstream 71bp
chr6 4937869 4937869 1 + C T UCEC 4937867 + 4937847 4937887 41 AGCAAGCTGGTACTGCTCAGCGCCGTTGGCAGCGTCTTCTG AGCAAGCTGGTACTGCTCAGCGTCGTTGGCAGCGTCTTCTG < 41bp 0.78756195361621 0.518169189227001 0.17420712 0.16331062 prediction 0.538785528778418 Functional Loss - CDYL ENSG00000153046 CDS Human protein_coding chr6:4937867 chr6:4937869 nonsynonymous SNV 0.803 3 23 hm5C_associated_SNPs_60076 0 0 1 0 1 CDYL chr6:4937799 3'AG 4937799 Downstream 71bp
chr20 61870819 61870819 1 + G T LUAD 61870816 + 61870796 61870836 41 CTGCAGGAGGAGAGGACGTGCAAGGTGTGCCTGGACCGCGC CTGCAGGAGGAGAGGACGTGCAATGTGTGCCTGGACCGCGC < 41bp 0.907765262173136 0.638406129940988 0.89971435 0.61150813 prediction 0.538718264464297 Functional Loss - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61870816 chr20:61870819 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_60079 0 0 0 0 1 BIRC7 chr20:61870764 3'AG 61870764 Downstream 56bp
chr3 160964132 160964132 1 + C T STAD 160964130 + 160964110 160964150 41 TCTTTCCTCTTAAGCATACCCTCGGGGAAGTCTGGGTACAG TCTTTCCTCTTAAGCATACCCTTGGGGAAGTCTGGGTACAG < 41bp 0.76934437023031 0.496565329249039 0.03392622 0.033126354 prediction 0.53868874046062 Functional Loss - NMD3 ENSG00000169251 CDS Human protein_coding chr3:160964130 chr3:160964132 synonymous SNV . 0 23 hm5C_associated_SNPs_60082 0 0 1 0 1 NMD3 chr3:160964124 3'AG 160964124 Downstream 9bp
chr17 62462612 62462612 1 + G T UCEC 62462609 + 62462589 62462629 41 GGCCGTGTGTTTCCACAGCCCAAGATGGTGAGCATGTTCTG GGCCGTGTGTTTCCACAGCCCAATATGGTGAGCATGTTCTG < 41bp 0.892413118676123 0.623068938743159 0.19573277 0.22240874 prediction 0.538688359865926 Functional Loss - MILR1 ENSG00000271605 CDS Human protein_coding chr17:62462609 chr17:62462612 unknown 0.006 0 24 hm5C_associated_SNPs_60083 0 0 0 0 2 MILR1 chr17:62462559 3'AG 62462559 Downstream 54bp
chr17 62462612 62462612 1 + G T UCEC 62462609 + 62462589 62462629 41 GGCCGTGTGTTTCCACAGCCCAAGATGGTGAGCATGTTCTG GGCCGTGTGTTTCCACAGCCCAATATGGTGAGCATGTTCTG < 41bp 0.892413118676123 0.623068938743159 0.19573277 0.22240874 prediction 0.538688359865926 Functional Loss - MILR1 ENSG00000271605 CDS Human protein_coding chr17:62462609 chr17:62462612 unknown 0.006 0 24 hm5C_associated_SNPs_60083 0 0 0 0 2 MILR1 chr17:62462615 5'GT 62462615 Upstream 4bp
chr15 40707145 40707145 1 + A T KIRC 40707141 + 40707121 40707161 41 TCTACGTGCTGATGAGTGGGCTGGACCTGGAGCGGCTGGTG TCTACGTGCTGATGAGTGGGCTGGTCCTGGAGCGGCTGGTG < 41bp 0.859128386141533 0.589816676640572 0.84582937 0.51387566 prediction 0.538623419001921 Functional Loss - IVD ENSG00000128928 CDS Human protein_coding chr15:40707141 chr15:40707145 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_60087 0 0 1 0 2 IVD chr15:40707088 3'AG 40707088 Downstream 58bp
chr15 40707145 40707145 1 + A T KIRC 40707141 + 40707121 40707161 41 TCTACGTGCTGATGAGTGGGCTGGACCTGGAGCGGCTGGTG TCTACGTGCTGATGAGTGGGCTGGTCCTGGAGCGGCTGGTG < 41bp 0.859128386141533 0.589816676640572 0.84582937 0.51387566 prediction 0.538623419001921 Functional Loss - IVD ENSG00000128928 CDS Human protein_coding chr15:40707141 chr15:40707145 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_60087 0 0 1 0 2 IVD chr15:40707181 5'GT 40707181 Upstream 37bp
chr13 21141324 21141324 1 + G C rs140349726 21141320 + 21141300 21141340 41 GATTCCGCGCTTGGCAACGGCTCGGCGTCGCGCTTTGGCCA GATTCCGCGCTTGGCAACGGCTCGCCGTCGCGCTTTGGCCA < 41bp 0.787405269488175 0.518098610361165 0.29803193 0.17581579 prediction 0.53861331825402 Functional Loss - IFT88 ENSG00000032742 UTR5 Human protein_coding chr13:21141320 chr13:21141324 . . 0 25 hm5C_associated_SNPs_60089 0 0 1 0 1 IFT88 chr13:21141395 5'GT 21141395 Upstream 72bp
chr19 48342627 48342627 1 + G T UCEC 48342625 + 48342605 48342645 41 GCAGGCAGCAGCGACAGCAGCAGAAACAGCAGCAGCAGCCC GCAGGCAGCAGCGACAGCAGCATAAACAGCAGCAGCAGCCC < 41bp 0.8818027848913 0.612513159040259 0.8880811 0.21330747 prediction 0.538579251702082 Functional Loss - CRX ENSG00000105392 CDS Human protein_coding chr19:48342625 chr19:48342627 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_60091 0 0 0 0 1 CRX chr19:48342577 3'AG 48342577 Downstream 51bp
chr15 45430172 45430172 1 + C T UCEC 45430170 + 45430150 45430190 41 ATCAATCGGAACTCAAGTGTCTCCAGAGCTCTCCGGGTCTG ATCAATCGGAACTCAAGTGTCTTCAGAGCTCTCCGGGTCTG < 41bp 0.796323982385288 0.527037261947146 0.9444804 0.4721198 prediction 0.538573440876285 Functional Loss - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45430170 chr15:45430172 nonsynonymous SNV 0.963 1 23 hm5C_associated_SNPs_60092 0 0 0 0 2 DUOX1 chr15:45430122 3'AG 45430122 Downstream 51bp
chr15 45430172 45430172 1 + C T UCEC 45430170 + 45430150 45430190 41 ATCAATCGGAACTCAAGTGTCTCCAGAGCTCTCCGGGTCTG ATCAATCGGAACTCAAGTGTCTTCAGAGCTCTCCGGGTCTG < 41bp 0.796323982385288 0.527037261947146 0.9444804 0.4721198 prediction 0.538573440876285 Functional Loss - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45430170 chr15:45430172 nonsynonymous SNV 0.963 1 23 hm5C_associated_SNPs_60092 0 0 0 0 2 DUOX1 chr15:45430212 5'GT 45430212 Upstream 41bp
chr19 55294964 55294964 1 + G T HNSC 55294962 + 55294942 55294982 41 TGCGGTAATGGACCAAGAGTCTGCAGGAAACAGAACAGCGA TGCGGTAATGGACCAAGAGTCTTCAGGAAACAGAACAGCGA < 41bp 0.769269541750783 0.449814171144891 0.3059618 0.21402311 prediction 0.538539083501566 Functional Loss - KIR2DL1 ENSG00000125498;ENSG00000243772 CDS Human other chr19:55294962 chr19:55294964 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_60097 0 0 0 0 2 KIR2DL1 chr19:55294938 3'AG 55294938 Downstream 27bp
chr19 55294964 55294964 1 + G T HNSC 55294962 + 55294942 55294982 41 TGCGGTAATGGACCAAGAGTCTGCAGGAAACAGAACAGCGA TGCGGTAATGGACCAAGAGTCTTCAGGAAACAGAACAGCGA < 41bp 0.769269541750783 0.449814171144891 0.3059618 0.21402311 prediction 0.538539083501566 Functional Loss - KIR2DL1 ENSG00000125498;ENSG00000243772 CDS Human other chr19:55294962 chr19:55294964 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_60097 0 0 0 0 2 KIR2DL1 chr19:55294990 5'GT 55294990 Upstream 27bp
chr12 65633992 65633992 1 + C T STAD 65633990 + 65633970 65634010 41 ACATGCCTATTCCACATGTACGCGATTCCTTAATACAGCCT ACATGCCTATTCCACATGTACGTGATTCCTTAATACAGCCT < 41bp 0.769262521797989 0.493195623026991 0.09255102 0.13006729 prediction 0.538525043595978 Functional Loss - LEMD3 ENSG00000174106 CDS Human protein_coding chr12:65633990 chr12:65633992 synonymous SNV . 0 23 hm5C_associated_SNPs_60098 0 0 0 0 2 LEMD3 chr12:65633916 3'AG 65633916 Downstream 77bp
chr12 65633992 65633992 1 + C T STAD 65633990 + 65633970 65634010 41 ACATGCCTATTCCACATGTACGCGATTCCTTAATACAGCCT ACATGCCTATTCCACATGTACGTGATTCCTTAATACAGCCT < 41bp 0.769262521797989 0.493195623026991 0.09255102 0.13006729 prediction 0.538525043595978 Functional Loss - LEMD3 ENSG00000174106 CDS Human protein_coding chr12:65633990 chr12:65633992 synonymous SNV . 0 23 hm5C_associated_SNPs_60098 0 0 0 0 2 LEMD3 chr12:65634018 5'GT 65634018 Upstream 27bp
chr6 121768579 121768579 1 + G T HNSC 121768576 + 121768556 121768596 41 AAAGAGATCCCTGCCCACATCAGGTGGACTGTTTCCTCTCT AAAGAGATCCCTGCCCACATCAGTTGGACTGTTTCCTCTCT < 41bp 0.769257259018246 0.371469402960055 0.9045218 0.118232995 prediction 0.538514518036493 Functional Loss - GJA1 ENSG00000152661 CDS Human protein_coding chr6:121768576 chr6:121768579 nonsynonymous SNV 0.975 4 24 hm5C_associated_SNPs_60100 0 0 0 0 1 GJA1 chr6:121768480 3'AG 121768480 Downstream 100bp
chr7 76069623 76069623 1 + C T UCEC 76069621 + 76069601 76069641 41 CTGAGCAGGACCCAGATGAACTCAACAAGGCCTGTTCCTTC CTGAGCAGGACCCAGATGAACTTAACAAGGCCTGTTCCTTC < 41bp 0.791439307795582 0.522182624350642 0.26918635 0.18992674 prediction 0.538513366889881 Functional Loss - ZP3 ENSG00000188372 CDS Human protein_coding chr7:76069621 chr7:76069623 synonymous SNV . 0 23 hm5C_associated_SNPs_60101 0 0 0 0 2 ZP3 chr7:76069567 3'AG 76069567 Downstream 57bp
chr7 76069623 76069623 1 + C T UCEC 76069621 + 76069601 76069641 41 CTGAGCAGGACCCAGATGAACTCAACAAGGCCTGTTCCTTC CTGAGCAGGACCCAGATGAACTTAACAAGGCCTGTTCCTTC < 41bp 0.791439307795582 0.522182624350642 0.26918635 0.18992674 prediction 0.538513366889881 Functional Loss - ZP3 ENSG00000188372 CDS Human protein_coding chr7:76069621 chr7:76069623 synonymous SNV . 0 23 hm5C_associated_SNPs_60101 0 0 0 0 2 ZP3 chr7:76069658 5'GT 76069658 Upstream 36bp
chr1 158943456 158943456 1 + G T LUAD 158943453 + 158943433 158943473 41 CCAGAAGGATGAAACCCACCCAGGAGCACAGTCATCGCCTG CCAGAAGGATGAAACCCACCCAGTAGCACAGTCATCGCCTG < 41bp 0.893512100253741 0.624268888182777 0.6412984 0.052926928 prediction 0.538486424141928 Functional Loss - PYHIN1 ENSG00000163564 CDS Human protein_coding chr1:158943453 chr1:158943456 nonsynonymous SNV 0.016 2 24 hm5C_associated_SNPs_60105 0 0 0 0 1 PYHIN1 chr1:158943437 3'AG 158943437 Downstream 20bp
chr4 25351147 25351147 1 + G T LUAD 25351144 + 25351124 25351164 41 AAGTATGCAGAGCATTTTTACAGGAAGATAAAGGCGAAGGA AAGTATGCAGAGCATTTTTACAGTAAGATAAAGGCGAAGGA < 41bp 0.809443933121422 0.540231880319032 0.56120205 0.31644636 prediction 0.53842410560478 Functional Loss - ZCCHC4 ENSG00000168228 CDS Human protein_coding chr4:25351144 chr4:25351147 stopgain 1.000 1 24 hm5C_associated_SNPs_60107 0 0 1 3 1 ZCCHC4 chr4:25351114 3'AG 25351114 Downstream 34bp
chr5 63803606 63803606 1 + G T HNSC 63803603 + 63803583 63803623 41 GTCATTTCTATTGGGGATGTCTCGGTCAGCTGCCCCTCACT GTCATTTCTATTGGGGATGTCTCTGTCAGCTGCCCCTCACT < 41bp 0.769210367392416 0.375161566770129 0.90051967 0.3937468 prediction 0.538420734784832 Functional Loss - RGS7BP ENSG00000186479 CDS Human protein_coding chr5:63803603 chr5:63803606 synonymous SNV . 0 24 hm5C_associated_SNPs_60109 0 0 0 0 1 RGS7BP chr5:63803538 3'AG 63803538 Downstream 69bp
chr5 63803605 63803605 1 + C T LUAD 63803603 + 63803583 63803623 41 GTCATTTCTATTGGGGATGTCTCGGTCAGCTGCCCCTCACT GTCATTTCTATTGGGGATGTCTTGGTCAGCTGCCCCTCACT < 41bp 0.769210367392416 0.490546157707696 0.90051967 0.6462561 prediction 0.538420734784832 Functional Loss - RGS7BP ENSG00000186479 CDS Human protein_coding chr5:63803603 chr5:63803605 nonsynonymous SNV 0.985 3 23 hm5C_associated_SNPs_60110 0 0 0 0 1 RGS7BP chr5:63803538 3'AG 63803538 Downstream 68bp
chr17 46973046 46973046 1 + C T SKCM 46973044 + 46973024 46973064 41 TCTCTCAAGCAGCAGCTCTTCTCCTATGCCATTCTTGGCTT TCTCTCAAGCAGCAGCTCTTCTTCTATGCCATTCTTGGCTT < 41bp 0.769201660227871 0.498884128176733 0.34139323 0.13115981 prediction 0.538403320455741 Functional Loss - ATP5G1 ENSG00000159199 CDS Human protein_coding chr17:46973044 chr17:46973046 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_60111 0 0 1 0 1 ATP5G1 chr17:46973017 3'AG 46973017 Downstream 30bp
chr18 10468517 10468517 1 + G T UCEC 10468514 + 10468494 10468534 41 TCCAGACAGCAGGTCTCATCCTAGGTCCTTAGAGAAAAGTG TCCAGACAGCAGGTCTCATCCTATGTCCTTAGAGAAAAGTG < 41bp 0.769200791484616 0.380368484258348 0.27314243 0.06586504 prediction 0.538401582969233 Functional Loss - APCDD1 ENSG00000154856 CDS Human protein_coding chr18:10468514 chr18:10468517 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_60112 0 0 0 0 1 APCDD1 chr18:10468466 3'AG 10468466 Downstream 52bp
chr12 65847524 65847524 1 + C T LGG 65847522 + 65847502 65847542 41 TCCCAGGTTGGCCTTCATTCCACGATGTGATCAATTCTGAG TCCCAGGTTGGCCTTCATTCCATGATGTGATCAATTCTGAG < 41bp 0.792270113184987 0.523071010185638 0.121840626 0.20740184 prediction 0.538398205998697 Functional Loss - MSRB3 ENSG00000174099 CDS Human protein_coding chr12:65847522 chr12:65847524 synonymous SNV . 0 23 hm5C_associated_SNPs_60113 0 0 0 0 2 MSRB3 chr12:65847508 3'AG 65847508 Downstream 17bp
chr12 65847524 65847524 1 + C T LGG 65847522 + 65847502 65847542 41 TCCCAGGTTGGCCTTCATTCCACGATGTGATCAATTCTGAG TCCCAGGTTGGCCTTCATTCCATGATGTGATCAATTCTGAG < 41bp 0.792270113184987 0.523071010185638 0.121840626 0.20740184 prediction 0.538398205998697 Functional Loss - MSRB3 ENSG00000174099 CDS Human protein_coding chr12:65847522 chr12:65847524 synonymous SNV . 0 23 hm5C_associated_SNPs_60113 0 0 0 0 2 MSRB3 chr12:65847605 5'GT 65847605 Upstream 82bp
chr10 28970967 28970967 1 + G T GBM 28970965 + 28970945 28970985 41 GAAACCTTATCACCAAGGTGCAGGAGCTGACTTCTTCCAAA GAAACCTTATCACCAAGGTGCATGAGCTGACTTCTTCCAAA < 41bp 0.769179499201292 0.439707138158042 0.49029392 0.087150335 prediction 0.538358998402583 Functional Loss - BAMBI ENSG00000095739 CDS Human protein_coding chr10:28970965 chr10:28970967 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_60115 0 0 1 0 1 BAMBI chr10:28970912 3'AG 28970912 Downstream 56bp
chr16 69922032 69922032 1 + C T rs78426175 69922030 + 69922010 69922050 41 GCTGCACCCTTGAGTGTGACCCCGAATCCCAACACGACTTC GCTGCACCCTTGAGTGTGACCCTGAATCCCAACACGACTTC < 41bp 0.775895427663131 0.506738811760028 0.10168207 0.07809949 prediction 0.538313231806206 Functional Loss - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69922030 chr16:69922032 nonsynonymous SNV 0.124 0 23 hm5C_associated_SNPs_60120 0 0 1 0 1 WWP2 chr16:69921942 3'AG 69921942 Downstream 91bp
chr1 9780880 9780880 1 + G T SARC 9780878 + 9780858 9780898 41 AGAAGGACCTGGTGTGGAAGCTGCGGCATGAAGTCCAGGAG AGAAGGACCTGGTGTGGAAGCTTCGGCATGAAGTCCAGGAG < 41bp 0.769147636771618 0.427519087142709 0.75856864 0.42695984 prediction 0.538295273543237 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9780878 chr1:9780880 synonymous SNV . 0 23 hm5C_associated_SNPs_60121 0 0 1 0 3 PIK3CD chr1:9780800 3'AG 9780800 Downstream 81bp
chr1 9780880 9780880 1 + G T SARC 9780878 + 9780858 9780898 41 AGAAGGACCTGGTGTGGAAGCTGCGGCATGAAGTCCAGGAG AGAAGGACCTGGTGTGGAAGCTTCGGCATGAAGTCCAGGAG < 41bp 0.769147636771618 0.427519087142709 0.75856864 0.42695984 prediction 0.538295273543237 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9780878 chr1:9780880 synonymous SNV . 0 23 hm5C_associated_SNPs_60121 0 0 1 0 3 PIK3CD chr1:9780803 3'AG 9780803 Downstream 78bp
chr1 9780880 9780880 1 + G T SARC 9780878 + 9780858 9780898 41 AGAAGGACCTGGTGTGGAAGCTGCGGCATGAAGTCCAGGAG AGAAGGACCTGGTGTGGAAGCTTCGGCATGAAGTCCAGGAG < 41bp 0.769147636771618 0.427519087142709 0.75856864 0.42695984 prediction 0.538295273543237 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9780878 chr1:9780880 synonymous SNV . 0 23 hm5C_associated_SNPs_60121 0 0 1 0 3 PIK3CD chr1:9780967 5'GT 9780967 Upstream 88bp
chr1 203029443 203029443 1 + G T LUAD 203029441 + 203029421 203029461 41 TGTCGGACACAGAGATCCAGCGGGAGATCGGCATCAGCAAT TGTCGGACACAGAGATCCAGCGTGAGATCGGCATCAGCAAT < 41bp 0.868082401031209 0.598949533453618 0.9028596 0.39013648 prediction 0.538265735155181 Functional Loss - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203029441 chr1:203029443 synonymous SNV . 0 23 hm5C_associated_SNPs_60125 0 0 0 0 1 PPFIA4 chr1:203029345 3'AG 203029345 Downstream 99bp
chr10 131334605 131334605 1 + A T SKCM 131334601 + 131334581 131334621 41 CTGGTTGTGAGCAGGGTCTGCACGAAATAAAGCTCCTGGGC CTGGTTGTGAGCAGGGTCTGCACGTAATAAAGCTCCTGGGC < 41bp 0.847168944405715 0.578044360096891 0.5081984 0.4097209 prediction 0.538249168617649 Functional Loss - MGMT ENSG00000170430 CDS Human protein_coding chr10:131334601 chr10:131334605 nonsynonymous SNV 0.050 0 25 hm5C_associated_SNPs_60126 0 0 0 0 1 MGMT chr10:131334641 5'GT 131334641 Upstream 37bp
chr12 58019389 58019389 1 + G T SARC 58019387 + 58019367 58019407 41 TTGGTGCAGGGGACACTGACCCGGGTAGGACTCCTGGACAG TTGGTGCAGGGGACACTGACCCTGGTAGGACTCCTGGACAG < 41bp 0.769123406492104 0.455030586502876 0.94343793 0.38317782 prediction 0.538246812984208 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58019387 chr12:58019389 nonsynonymous SNV 0.971 2 23 hm5C_associated_SNPs_60127 0 0 0 0 1 SLC26A10 chr12:58019365 3'AG 58019365 Downstream 25bp
chr15 55632859 55632859 1 + G T rs678892 55632857 + 55632837 55632877 41 AAATTTAACGTGCTGCAGAACTGGGGAACATTTTATGGTTC AAATTTAACGTGCTGCAGAACTTGGGAACATTTTATGGTTC < 41bp 0.769122142691664 0.447470933024458 0.537414 0.040157914 prediction 0.538244285383329 Functional Loss - PIGB ENSG00000069943 CDS Human protein_coding chr15:55632857 chr15:55632859 nonsynonymous SNV 0.912 0 23 hm5C_associated_SNPs_60128 0 0 0 0 1 PIGB chr15:55632810 3'AG 55632810 Downstream 50bp
chrX 13332661 13332661 1 + G T rs139971712 13332658 + 13332638 13332678 41 CATGGGTCCCTATCAGGAAGCAGGGCTGCTCTGCAGGTCAA CATGGGTCCCTATCAGGAAGCAGTGCTGCTCTGCAGGTCAA < 41bp 0.769114456157767 0.400719539717305 0.89216197 0.13578933 prediction 0.538228912315533 Functional Loss - GS1-600G8.3 ENSG00000231216 ncRNA_exonic Human antisense chrX:13332658 chrX:13332661 . . 0 24 hm5C_associated_SNPs_60130 0 0 0 0 2 GS1-600G8.3 chrX:13332608 3'AG 13332608 Downstream 54bp
chrX 13332661 13332661 1 + G T rs139971712 13332658 + 13332638 13332678 41 CATGGGTCCCTATCAGGAAGCAGGGCTGCTCTGCAGGTCAA CATGGGTCCCTATCAGGAAGCAGTGCTGCTCTGCAGGTCAA < 41bp 0.769114456157767 0.400719539717305 0.89216197 0.13578933 prediction 0.538228912315533 Functional Loss - GS1-600G8.3 ENSG00000231216 ncRNA_exonic Human antisense chrX:13332658 chrX:13332661 . . 0 24 hm5C_associated_SNPs_60130 0 0 0 0 2 GS1-600G8.3 chrX:13332732 5'GT 13332732 Upstream 72bp
chr1 241936168 241936168 1 + G T COAD 241936166 + 241936146 241936186 41 CCCTGGAATTGCCAATTTACCAGAAGCCCAGCCACCTATCC CCCTGGAATTGCCAATTTACCATAAGCCCAGCCACCTATCC < 41bp 0.867080546167168 0.597981828692164 0.3908671 0.03827256 prediction 0.538197434950009 Functional Loss - WDR64 ENSG00000162843 CDS Human protein_coding chr1:241936166 chr1:241936168 stopgain 0.002 0 23 hm5C_associated_SNPs_60135 0 0 0 0 2 WDR64 chr1:241936094 3'AG 241936094 Downstream 75bp
chr1 241936168 241936168 1 + G T COAD 241936166 + 241936146 241936186 41 CCCTGGAATTGCCAATTTACCAGAAGCCCAGCCACCTATCC CCCTGGAATTGCCAATTTACCATAAGCCCAGCCACCTATCC < 41bp 0.867080546167168 0.597981828692164 0.3908671 0.03827256 prediction 0.538197434950009 Functional Loss - WDR64 ENSG00000162843 CDS Human protein_coding chr1:241936166 chr1:241936168 stopgain 0.002 0 23 hm5C_associated_SNPs_60135 0 0 0 0 2 WDR64 chr1:241936233 5'GT 241936233 Upstream 66bp
chr3 52522553 52522553 1 + G T UCEC 52522550 + 52522530 52522570 41 CTGAAGACTGTGGTCATCGCCAAGACCCCCGGGACGGGAGG CTGAAGACTGTGGTCATCGCCAATACCCCCGGGACGGGAGG < 41bp 0.769090223622658 0.391495655624773 0.43484062 0.120833576 prediction 0.538180447245316 Functional Loss - NISCH ENSG00000010322 CDS Human protein_coding chr3:52522550 chr3:52522553 nonsynonymous SNV 0.885 4 24 hm5C_associated_SNPs_60136 0 0 1 0 1 NISCH chr3:52522621 5'GT 52522621 Upstream 69bp
chr1 114449713 114449713 1 + C T rs547539348 114449711 + 114449691 114449731 41 AGACCATGACCGTAACCCTCCTCGATGCCAATCACTGTCCT AGACCATGACCGTAACCCTCCTTGATGCCAATCACTGTCCT < 41bp 0.769078341948064 0.479387960183059 0.5273662 0.10277295 prediction 0.538156683896128 Functional Loss - DCLRE1B ENSG00000118655 CDS Human protein_coding chr1:114449711 chr1:114449713 synonymous SNV . 0 23 hm5C_associated_SNPs_60139 0 0 1 0 2 DCLRE1B chr1:114449618 3'AG 114449618 Downstream 96bp
chr1 114449713 114449713 1 + C T rs547539348 114449711 + 114449691 114449731 41 AGACCATGACCGTAACCCTCCTCGATGCCAATCACTGTCCT AGACCATGACCGTAACCCTCCTTGATGCCAATCACTGTCCT < 41bp 0.769078341948064 0.479387960183059 0.5273662 0.10277295 prediction 0.538156683896128 Functional Loss - DCLRE1B ENSG00000118655 CDS Human protein_coding chr1:114449711 chr1:114449713 synonymous SNV . 0 23 hm5C_associated_SNPs_60139 0 0 1 0 2 DCLRE1B chr1:114449783 5'GT 114449783 Upstream 71bp
chr1 114449714 114449714 1 + G T MESO 114449711 + 114449691 114449731 41 AGACCATGACCGTAACCCTCCTCGATGCCAATCACTGTCCT AGACCATGACCGTAACCCTCCTCTATGCCAATCACTGTCCT < 41bp 0.769078341948064 0.401807393472375 0.5273662 0.8983357 prediction 0.538156683896128 Functional Loss - DCLRE1B ENSG00000118655 CDS Human protein_coding chr1:114449711 chr1:114449714 nonsynonymous SNV 0.966 4 24 hm5C_associated_SNPs_60140 0 0 1 0 2 DCLRE1B chr1:114449618 3'AG 114449618 Downstream 97bp
chr1 114449714 114449714 1 + G T MESO 114449711 + 114449691 114449731 41 AGACCATGACCGTAACCCTCCTCGATGCCAATCACTGTCCT AGACCATGACCGTAACCCTCCTCTATGCCAATCACTGTCCT < 41bp 0.769078341948064 0.401807393472375 0.5273662 0.8983357 prediction 0.538156683896128 Functional Loss - DCLRE1B ENSG00000118655 CDS Human protein_coding chr1:114449711 chr1:114449714 nonsynonymous SNV 0.966 4 24 hm5C_associated_SNPs_60140 0 0 1 0 2 DCLRE1B chr1:114449783 5'GT 114449783 Upstream 70bp
chr1 28208528 28208528 1 + G T SKCM 28208525 + 28208505 28208545 41 CCTTCTACCCTGGAGGTCGACGTGGAGGACGTCACCGCCTC CCTTCTACCCTGGAGGTCGACGTTGAGGACGTCACCGCCTC < 41bp 0.769060045332558 0.369628571121481 0.510874 0.1969795 prediction 0.538120090665117 Functional Loss - THEMIS2 ENSG00000130775 CDS Human protein_coding chr1:28208525 chr1:28208528 synonymous SNV . 0 24 hm5C_associated_SNPs_60142 0 0 0 0 1 THEMIS2 chr1:28208482 3'AG 28208482 Downstream 47bp
chr14 75359641 75359641 1 + C T HNSC 75359639 + 75359619 75359659 41 CCCTGCAGCACCCATACCCACTCAGATGCCACCGGTGCCCT CCCTGCAGCACCCATACCCACTTAGATGCCACCGGTGCCCT < 41bp 0.774826753738544 0.505767387130458 0.016706973 0.044695407 prediction 0.538118733216173 Functional Loss - DLST ENSG00000119689 CDS Human protein_coding chr14:75359639 chr14:75359641 stopgain 0.985 0 23 hm5C_associated_SNPs_60143 0 0 1 0 1 DLST chr14:75359689 5'GT 75359689 Upstream 49bp
chr2 226516204 226516204 1 + C T LUAD 226516202 + 226516182 226516222 41 GTCGACGTCAGGTGTGCCTCCTCCATCAGTCACTCCCCTCA GTCGACGTCAGGTGTGCCTCCTTCATCAGTCACTCCCCTCA < 41bp 0.769034135112937 0.487138404478074 0.9510297 0.40374497 prediction 0.538068270225875 Functional Loss - NYAP2 ENSG00000144460 CDS Human protein_coding chr2:226516202 chr2:226516204 nonsynonymous SNV 0.779 3 23 hm5C_associated_SNPs_60145 0 0 0 1 2 NYAP2 chr2:226516148 3'AG 226516148 Downstream 57bp
chr2 226516204 226516204 1 + C T LUAD 226516202 + 226516182 226516222 41 GTCGACGTCAGGTGTGCCTCCTCCATCAGTCACTCCCCTCA GTCGACGTCAGGTGTGCCTCCTTCATCAGTCACTCCCCTCA < 41bp 0.769034135112937 0.487138404478074 0.9510297 0.40374497 prediction 0.538068270225875 Functional Loss - NYAP2 ENSG00000144460 CDS Human protein_coding chr2:226516202 chr2:226516204 nonsynonymous SNV 0.779 3 23 hm5C_associated_SNPs_60145 0 0 0 1 2 NYAP2 chr2:226516251 5'GT 226516251 Upstream 48bp
chr5 38438498 38438498 1 + G T COAD 38438496 + 38438476 38438516 41 CATGGGGGCAGCTGCCGGCCCAGGAAGGAGGGCTATGACTG CATGGGGGCAGCTGCCGGCCCATGAAGGAGGGCTATGACTG < 41bp 0.868261073761271 0.59923626655195 0.7558645 0.25898987 prediction 0.538049614418642 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38438496 chr5:38438498 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_60147 0 0 0 0 1 EGFLAM chr5:38438557 5'GT 38438557 Upstream 60bp
chr11 114133634 114133634 1 + G T rs10891639 114133632 + 114133612 114133652 41 GAGGGAAAGAGGAAGTGCATCAGGACGGCTCGTCCAATGGA GAGGGAAAGAGGAAGTGCATCATGACGGCTCGTCCAATGGA < 41bp 0.769021951361016 0.450985600310691 0.8451481 0.20518884 prediction 0.538043902722033 Functional Loss - ZBTB16;NNMT ENSG00000256947 ncRNA_intronic Human antisense chr11:114133632 chr11:114133634 . . 0 23 hm5C_associated_SNPs_60150 0 0 0 0 1 ZBTB16;NNMT chr11:114133656 5'GT 114133656 Upstream 23bp
chr10 4877928 4877928 1 + G T LUAD 4877925 + 4877905 4877945 41 TTCCTTCTGCCTCTCACATCCTCGAGTGCAGGACTTGCCTC TTCCTTCTGCCTCTCACATCCTCTAGTGCAGGACTTGCCTC < 41bp 0.898755932445543 0.62977455908216 0.42084908 0.85722494 prediction 0.537962746726767 Functional Loss - AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4877925 chr10:4877928 nonsynonymous SNV 0.004 1 24 hm5C_associated_SNPs_60151 0 0 0 0 2 AKR1E2 chr10:4877867 3'AG 4877867 Downstream 62bp
chr10 4877928 4877928 1 + G T LUAD 4877925 + 4877905 4877945 41 TTCCTTCTGCCTCTCACATCCTCGAGTGCAGGACTTGCCTC TTCCTTCTGCCTCTCACATCCTCTAGTGCAGGACTTGCCTC < 41bp 0.898755932445543 0.62977455908216 0.42084908 0.85722494 prediction 0.537962746726767 Functional Loss - AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4877925 chr10:4877928 nonsynonymous SNV 0.004 1 24 hm5C_associated_SNPs_60151 0 0 0 0 2 AKR1E2 chr10:4878001 5'GT 4878001 Upstream 74bp
chr20 18464161 18464161 1 + C T HNSC 18464159 + 18464139 18464179 41 CCACGAAGGTGGTGAGATTTCACCATCTAACTGTATTTACA CCACGAAGGTGGTGAGATTTCATCATCTAACTGTATTTACA < 41bp 0.773197136540439 0.504216014540599 0.10161233 0.09017047 prediction 0.537962243999678 Functional Loss - POLR3F ENSG00000132664 CDS Human protein_coding chr20:18464159 chr20:18464161 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_60152 0 0 1 0 1 POLR3F chr20:18464125 3'AG 18464125 Downstream 37bp
chr2 85846412 85846412 1 + G T UCEC 85846410 + 85846390 85846430 41 CCGTACCTGGACACCATTAACAGGTCAGTAGGACAGAGATG CCGTACCTGGACACCATTAACATGTCAGTAGGACAGAGATG < 41bp 0.768975234773419 0.446114617180474 0.91560286 0.6814921 prediction 0.537950469546838 Functional Loss - USP39 ENSG00000168883 CDS Human protein_coding chr2:85846410 chr2:85846412 nonsynonymous SNV 0.614 4 23 hm5C_associated_SNPs_60153 0 0 1 0 2 USP39 chr2:85846343 3'AG 85846343 Downstream 70bp
chr2 85846412 85846412 1 + G T UCEC 85846410 + 85846390 85846430 41 CCGTACCTGGACACCATTAACAGGTCAGTAGGACAGAGATG CCGTACCTGGACACCATTAACATGTCAGTAGGACAGAGATG < 41bp 0.768975234773419 0.446114617180474 0.91560286 0.6814921 prediction 0.537950469546838 Functional Loss - USP39 ENSG00000168883 CDS Human protein_coding chr2:85846410 chr2:85846412 nonsynonymous SNV 0.614 4 23 hm5C_associated_SNPs_60153 0 0 1 0 2 USP39 chr2:85846412 5'GT 85846412 Upstream 1bp
chr17 60501649 60501649 1 + G T BLCA 60501647 + 60501627 60501667 41 AAGTCCAGGAGAACAGTATCCAGCGGGTGTGCCAGGAGAAA AAGTCCAGGAGAACAGTATCCATCGGGTGTGCCAGGAGAAA < 41bp 0.768973803080496 0.4652849981427 0.8753067 0.41029486 prediction 0.537947606160991 Functional Loss - METTL2A ENSG00000087995 CDS Human protein_coding chr17:60501647 chr17:60501649 nonsynonymous SNV 0.305 1 23 hm5C_associated_SNPs_60154 0 0 0 0 2 METTL2A chr17:60501580 3'AG 60501580 Downstream 70bp
chr17 60501649 60501649 1 + G T BLCA 60501647 + 60501627 60501667 41 AAGTCCAGGAGAACAGTATCCAGCGGGTGTGCCAGGAGAAA AAGTCCAGGAGAACAGTATCCATCGGGTGTGCCAGGAGAAA < 41bp 0.768973803080496 0.4652849981427 0.8753067 0.41029486 prediction 0.537947606160991 Functional Loss - METTL2A ENSG00000087995 CDS Human protein_coding chr17:60501647 chr17:60501649 nonsynonymous SNV 0.305 1 23 hm5C_associated_SNPs_60154 0 0 0 0 2 METTL2A chr17:60501671 5'GT 60501671 Upstream 23bp
chr13 37007342 37007342 1 + G T COAD 37007340 + 37007320 37007360 41 CTAACTGCAAATGGGCAGTACAGGAGGACCTGTGGCCAGGT CTAACTGCAAATGGGCAGTACATGAGGACCTGTGGCCAGGT < 41bp 0.869945210291453 0.600988744580138 0.9096321 0.5858683 prediction 0.537912931422631 Functional Loss - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37007340 chr13:37007342 nonsynonymous SNV 0.879 2 23 hm5C_associated_SNPs_60158 0 0 0 1 1 CCNA1 chr13:37007358 5'GT 37007358 Upstream 17bp
chr9 35853193 35853193 1 + A C UCEC 35853189 + 35853169 35853209 41 CCATGGCTCTGCAGCTTGACCGACATGGACTCTGGAACCTG CCATGGCTCTGCAGCTTGACCGACCTGGACTCTGGAACCTG < 41bp 0.76895344612421 0.343668437782887 0.13042372 0.19395542 prediction 0.53790689224842 Functional Loss - TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35853189 chr9:35853193 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_60159 0 0 0 0 2 TMEM8B chr9:35853138 3'AG 35853138 Downstream 56bp
chr9 35853193 35853193 1 + A C UCEC 35853189 + 35853169 35853209 41 CCATGGCTCTGCAGCTTGACCGACATGGACTCTGGAACCTG CCATGGCTCTGCAGCTTGACCGACCTGGACTCTGGAACCTG < 41bp 0.76895344612421 0.343668437782887 0.13042372 0.19395542 prediction 0.53790689224842 Functional Loss - TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35853189 chr9:35853193 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_60159 0 0 0 0 2 TMEM8B chr9:35853254 5'GT 35853254 Upstream 62bp
chr1 20412623 20412623 1 + G C BLCA 20412622 + 20412602 20412642 41 CTGGACCTAAAATCAATGATCGAGAAGGTGACAGGGAAGAA CTGGACCTAAAATCAATGATCCAGAAGGTGACAGGGAAGAA < 41bp 0.840432667377769 0.57148055179783 0.47413757 0.2965351 prediction 0.537904231159878 Functional Loss - PLA2G5 ENSG00000127472 CDS Human protein_coding chr1:20412622 chr1:20412623 nonsynonymous SNV 0.542 0 22 hm5C_associated_SNPs_60160 0 0 0 1 2 PLA2G5 chr1:20412576 3'AG 20412576 Downstream 48bp
chr1 20412623 20412623 1 + G C BLCA 20412622 + 20412602 20412642 41 CTGGACCTAAAATCAATGATCGAGAAGGTGACAGGGAAGAA CTGGACCTAAAATCAATGATCCAGAAGGTGACAGGGAAGAA < 41bp 0.840432667377769 0.57148055179783 0.47413757 0.2965351 prediction 0.537904231159878 Functional Loss - PLA2G5 ENSG00000127472 CDS Human protein_coding chr1:20412622 chr1:20412623 nonsynonymous SNV 0.542 0 22 hm5C_associated_SNPs_60160 0 0 0 1 2 PLA2G5 chr1:20412720 5'GT 20412720 Upstream 98bp
chr8 11683626 11683626 1 + G T GBM 11683624 + 11683604 11683644 41 CCCCTTAGTTGGTGAAGATACAGAACGTGCCAACTCTATGG CCCCTTAGTTGGTGAAGATACATAACGTGCCAACTCTATGG < 41bp 0.851598485485299 0.582654576254117 0.07065469 0.03715557 prediction 0.537887818462364 Functional Loss - FDFT1 ENSG00000079459 CDS Human protein_coding chr8:11683624 chr8:11683626 stopgain 0.182 1 23 hm5C_associated_SNPs_60162 0 0 1 2 3 FDFT1 chr8:11683533 3'AG 11683533 Downstream 94bp
chr8 11683626 11683626 1 + G T GBM 11683624 + 11683604 11683644 41 CCCCTTAGTTGGTGAAGATACAGAACGTGCCAACTCTATGG CCCCTTAGTTGGTGAAGATACATAACGTGCCAACTCTATGG < 41bp 0.851598485485299 0.582654576254117 0.07065469 0.03715557 prediction 0.537887818462364 Functional Loss - FDFT1 ENSG00000079459 CDS Human protein_coding chr8:11683624 chr8:11683626 stopgain 0.182 1 23 hm5C_associated_SNPs_60162 0 0 1 2 3 FDFT1 chr8:11683588 3'AG 11683588 Downstream 39bp
chr8 11683626 11683626 1 + G T GBM 11683624 + 11683604 11683644 41 CCCCTTAGTTGGTGAAGATACAGAACGTGCCAACTCTATGG CCCCTTAGTTGGTGAAGATACATAACGTGCCAACTCTATGG < 41bp 0.851598485485299 0.582654576254117 0.07065469 0.03715557 prediction 0.537887818462364 Functional Loss - FDFT1 ENSG00000079459 CDS Human protein_coding chr8:11683624 chr8:11683626 stopgain 0.182 1 23 hm5C_associated_SNPs_60162 0 0 1 2 3 FDFT1 chr8:11683724 5'GT 11683724 Upstream 99bp
chr19 34935998 34935998 1 + G T COAD 34935995 + 34935975 34936015 41 TAAGGAATGGGCTAAATCAACTGGATATGATCCAGTTAAAC TAAGGAATGGGCTAAATCAACTGTATATGATCCAGTTAAAC < 41bp 0.768938978998744 0.40618275984223 0.30586556 0.15298611 prediction 0.537877957997487 Functional Loss - UBA2 ENSG00000126261 CDS Human protein_coding chr19:34935995 chr19:34935998 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_60163 0 0 1 0 2 UBA2 chr19:34935905 3'AG 34935905 Downstream 94bp
chr19 34935998 34935998 1 + G T COAD 34935995 + 34935975 34936015 41 TAAGGAATGGGCTAAATCAACTGGATATGATCCAGTTAAAC TAAGGAATGGGCTAAATCAACTGTATATGATCCAGTTAAAC < 41bp 0.768938978998744 0.40618275984223 0.30586556 0.15298611 prediction 0.537877957997487 Functional Loss - UBA2 ENSG00000126261 CDS Human protein_coding chr19:34935995 chr19:34935998 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_60163 0 0 1 0 2 UBA2 chr19:34936026 5'GT 34936026 Upstream 29bp
chr3 8590280 8590280 1 + C T SKCM 8590278 + 8590258 8590298 41 TGCAGTACATGGAGCTCATCCCCAAGGAGAAGCAGCCAGTG TGCAGTACATGGAGCTCATCCCTAAGGAGAAGCAGCCAGTG < 41bp 0.768937336178571 0.487189133970363 0.065606356 0.042689174 prediction 0.537874672357142 Functional Loss - LMCD1 ENSG00000071282 CDS Human protein_coding chr3:8590278 chr3:8590280 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_60164 0 0 0 0 1 LMCD1 chr3:8590254 3'AG 8590254 Downstream 27bp
chr5 52778823 52778823 1 + G C BLCA 52778822 + 52778802 52778842 41 CGGCTGAGCACCTCGTGGACCGAGGAGGACGTGAATGACAA CGGCTGAGCACCTCGTGGACCCAGGAGGACGTGAATGACAA < 41bp 0.82335610159731 0.554424166355134 0.48075876 0.2679416 prediction 0.537863870484352 Functional Loss - FST ENSG00000134363 CDS Human protein_coding chr5:52778822 chr5:52778823 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_60166 0 0 1 0 1 FST chr5:52778901 5'GT 52778901 Upstream 79bp
chr16 14738401 14738401 1 + G C BLCA 14738397 + 14738377 14738417 41 TGCTTTATGGTGGGCATCTTCAAAGAAAACAGAATGTCCAG TGCTTTATGGTGGGCATCTTCAAACAAAACAGAATGTCCAG < 41bp 0.782125922874257 0.51320444937455 0.40037748 0.35164753 prediction 0.537842946999414 Functional Loss - BFAR ENSG00000103429 CDS Human protein_coding chr16:14738397 chr16:14738401 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_60168 0 0 1 0 1 BFAR chr16:14738466 5'GT 14738466 Upstream 66bp
chrX 110924985 110924985 1 + G T rs765306736 110924983 + 110924963 110925003 41 TCCTTCCCCTCAGCACTTGGCCGGAGCCCGCGCGGTTCCTC TCCTTCCCCTCAGCACTTGGCCTGAGCCCGCGCGGTTCCTC < 41bp 0.768913672090322 0.441621490890589 0.7319384 0.12818202 prediction 0.537827344180645 Functional Loss - ALG13 ENSG00000101901 intronic Human protein_coding chrX:110924983 chrX:110924985 . . 0 23 hm5C_associated_SNPs_60169 0 0 0 0 1 ALG13 chrX:110925054 5'GT 110925054 Upstream 70bp
chr1 23107970 23107970 1 + C T LUSC 23107968 + 23107948 23107988 41 GCTGGGCTGGATGGTGCATCCTCCATCAGGGGTGAGTCAGT GCTGGGCTGGATGGTGCATCCTTCATCAGGGGTGAGTCAGT < 41bp 0.811276455759942 0.54236429800912 0.9682703 0.07986781 prediction 0.537824315501643 Functional Loss - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23107968 chr1:23107970 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_60171 0 0 0 0 2 EPHB2 chr1:23107914 3'AG 23107914 Downstream 57bp
chr1 23107970 23107970 1 + C T LUSC 23107968 + 23107948 23107988 41 GCTGGGCTGGATGGTGCATCCTCCATCAGGGGTGAGTCAGT GCTGGGCTGGATGGTGCATCCTTCATCAGGGGTGAGTCAGT < 41bp 0.811276455759942 0.54236429800912 0.9682703 0.07986781 prediction 0.537824315501643 Functional Loss - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23107968 chr1:23107970 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_60171 0 0 0 0 2 EPHB2 chr1:23107978 5'GT 23107978 Upstream 9bp
chr16 1394511 1394511 1 + G T UCEC 1394508 + 1394488 1394528 41 TACGACAGGATCCTGAATGACAAGAGTCCCCGAGAGCAGGT TACGACAGGATCCTGAATGACAATAGTCCCCGAGAGCAGGT < 41bp 0.768908962897162 0.382873817882542 0.27569568 0.10530615 prediction 0.537817925794325 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1394508 chr16:1394511 nonsynonymous SNV 0.287 0 24 hm5C_associated_SNPs_60172 0 0 0 0 2 BAIAP3 chr16:1394470 3'AG 1394470 Downstream 42bp
chr16 1394511 1394511 1 + G T UCEC 1394508 + 1394488 1394528 41 TACGACAGGATCCTGAATGACAAGAGTCCCCGAGAGCAGGT TACGACAGGATCCTGAATGACAATAGTCCCCGAGAGCAGGT < 41bp 0.768908962897162 0.382873817882542 0.27569568 0.10530615 prediction 0.537817925794325 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1394508 chr16:1394511 nonsynonymous SNV 0.287 0 24 hm5C_associated_SNPs_60172 0 0 0 0 2 BAIAP3 chr16:1394526 5'GT 1394526 Upstream 16bp
chr5 162944664 162944664 1 + G T SARC 162944662 + 162944642 162944682 41 GCAGATGCCTTCAACCTCCCCAGCAGTCACTTAAGACCTGT GCAGATGCCTTCAACCTCCCCATCAGTCACTTAAGACCTGT < 41bp 0.835520911532874 0.56661696401956 0.20051968 0.052256405 prediction 0.537807895026629 Functional Loss - MAT2B ENSG00000038274 CDS Human protein_coding chr5:162944662 chr5:162944664 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_60174 0 0 1 1 2 MAT2B chr5:162944567 3'AG 162944567 Downstream 98bp
chr5 162944664 162944664 1 + G T SARC 162944662 + 162944642 162944682 41 GCAGATGCCTTCAACCTCCCCAGCAGTCACTTAAGACCTGT GCAGATGCCTTCAACCTCCCCATCAGTCACTTAAGACCTGT < 41bp 0.835520911532874 0.56661696401956 0.20051968 0.052256405 prediction 0.537807895026629 Functional Loss - MAT2B ENSG00000038274 CDS Human protein_coding chr5:162944662 chr5:162944664 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_60174 0 0 1 1 2 MAT2B chr5:162944680 5'GT 162944680 Upstream 17bp
chr19 13059912 13059912 1 + C T SKCM 13059910 + 13059890 13059930 41 GACAGGGAATTCCTGGGAGCCCCGAGCCGGAACACGGTTCT GACAGGGAATTCCTGGGAGCCCTGAGCCGGAACACGGTTCT < 41bp 0.776821132179272 0.50792007980381 0.15286595 0.11430627 prediction 0.537802104750924 Functional Loss - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13059910 chr19:13059912 synonymous SNV . 0 23 hm5C_associated_SNPs_60175 0 0 1 0 2 RAD23A chr19:13059895 3'AG 13059895 Downstream 18bp
chr19 13059912 13059912 1 + C T SKCM 13059910 + 13059890 13059930 41 GACAGGGAATTCCTGGGAGCCCCGAGCCGGAACACGGTTCT GACAGGGAATTCCTGGGAGCCCTGAGCCGGAACACGGTTCT < 41bp 0.776821132179272 0.50792007980381 0.15286595 0.11430627 prediction 0.537802104750924 Functional Loss - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13059910 chr19:13059912 synonymous SNV . 0 23 hm5C_associated_SNPs_60175 0 0 1 0 2 RAD23A chr19:13059973 5'GT 13059973 Upstream 62bp
chr17 74464902 74464902 1 + G T UCEC 74464899 + 74464879 74464919 41 ACCTGGGATCCCCGAGTCCCCGAGCTGTCAGCGGCGCCACA ACCTGGGATCCCCGAGTCCCCGATCTGTCAGCGGCGCCACA < 41bp 0.768893060227199 0.368012154688423 0.3727256 0.010084897 prediction 0.537786120454399 Functional Loss - AANAT ENSG00000129673 CDS Human protein_coding chr17:74464899 chr17:74464902 nonsynonymous SNV 0.171 0 24 hm5C_associated_SNPs_60177 0 0 0 0 1 AANAT chr17:74464991 5'GT 74464991 Upstream 90bp
chr10 20436753 20436753 1 + G T STAD 20436751 + 20436731 20436771 41 AGTGGGACCATGTACATCTCCAGGATAATTATAACCTGGGA AGTGGGACCATGTACATCTCCATGATAATTATAACCTGGGA < 41bp 0.768884847432766 0.44780477011292 0.50192857 0.115753114 prediction 0.537769694865531 Functional Loss - PLXDC2 ENSG00000120594 CDS Human protein_coding chr10:20436751 chr10:20436753 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_60178 0 0 1 2 2 PLXDC2 chr10:20436713 3'AG 20436713 Downstream 41bp
chr10 20436753 20436753 1 + G T STAD 20436751 + 20436731 20436771 41 AGTGGGACCATGTACATCTCCAGGATAATTATAACCTGGGA AGTGGGACCATGTACATCTCCATGATAATTATAACCTGGGA < 41bp 0.768884847432766 0.44780477011292 0.50192857 0.115753114 prediction 0.537769694865531 Functional Loss - PLXDC2 ENSG00000120594 CDS Human protein_coding chr10:20436751 chr10:20436753 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_60178 0 0 1 2 2 PLXDC2 chr10:20436831 5'GT 20436831 Upstream 79bp
chr3 38316550 38316550 1 + G T LUAD 38316547 + 38316527 38316567 41 GCCCAGTGCAACTTCTCCCTCGGGCAGATGGTGCTTGCGGG GCCCAGTGCAACTTCTCCCTCGGTCAGATGGTGCTTGCGGG < 41bp 0.768880501632501 0.359718756255366 0.858438 0.1890131 prediction 0.537761003265002 Functional Loss - SLC22A13 ENSG00000172940 CDS Human protein_coding chr3:38316547 chr3:38316550 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_60179 0 0 0 3 2 SLC22A13 chr3:38316480 3'AG 38316480 Downstream 71bp
chr3 38316550 38316550 1 + G T LUAD 38316547 + 38316527 38316567 41 GCCCAGTGCAACTTCTCCCTCGGGCAGATGGTGCTTGCGGG GCCCAGTGCAACTTCTCCCTCGGTCAGATGGTGCTTGCGGG < 41bp 0.768880501632501 0.359718756255366 0.858438 0.1890131 prediction 0.537761003265002 Functional Loss - SLC22A13 ENSG00000172940 CDS Human protein_coding chr3:38316547 chr3:38316550 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_60179 0 0 0 3 2 SLC22A13 chr3:38316648 5'GT 38316648 Upstream 99bp
chr17 54925355 54925355 1 + C T SKCM 54925353 + 54925333 54925373 41 TCTTCTCCCATATTATTCAGCTCGAGTACTTGTTTGTGGAG TCTTCTCCCATATTATTCAGCTTGAGTACTTGTTTGTGGAG < 41bp 0.768854909489787 0.478978702480194 0.067977875 0.02626267 prediction 0.537709818979574 Functional Loss - DGKE ENSG00000153933 CDS Human protein_coding chr17:54925353 chr17:54925355 stopgain 0.999 1 23 hm5C_associated_SNPs_60181 0 0 1 0 2 DGKE chr17:54925283 3'AG 54925283 Downstream 73bp
chr17 54925355 54925355 1 + C T SKCM 54925353 + 54925333 54925373 41 TCTTCTCCCATATTATTCAGCTCGAGTACTTGTTTGTGGAG TCTTCTCCCATATTATTCAGCTTGAGTACTTGTTTGTGGAG < 41bp 0.768854909489787 0.478978702480194 0.067977875 0.02626267 prediction 0.537709818979574 Functional Loss - DGKE ENSG00000153933 CDS Human protein_coding chr17:54925353 chr17:54925355 stopgain 0.999 1 23 hm5C_associated_SNPs_60181 0 0 1 0 2 DGKE chr17:54925426 5'GT 54925426 Upstream 72bp
chr19 54634744 54634744 1 + G T LUAD 54634741 + 54634721 54634761 41 CTCCCTCACCTGCCCAGGGCCTGGAGATTGTGAACCCACAG CTCCCTCACCTGCCCAGGGCCTGTAGATTGTGAACCCACAG < 41bp 0.900621710508543 0.631775143692543 0.20586276 0.056529194 prediction 0.537693133632001 Functional Loss - PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54634741 chr19:54634744 stopgain 0.950 1 24 hm5C_associated_SNPs_60182 0 0 1 0 1 PRPF31 chr19:54634738 3'AG 54634738 Downstream 7bp
chr15 90164725 90164725 1 + C T COAD 90164723 + 90164703 90164743 41 CCCCTCAGAAAAGGGTTCAGCTCGAATGAAAAAGCGTTCAA CCCCTCAGAAAAGGGTTCAGCTTGAATGAAAAAGCGTTCAA < 41bp 0.792453786722516 0.523608400355096 0.2842341 0.11843857 prediction 0.53769077273484 Functional Loss - TICRR ENSG00000140534 CDS Human protein_coding chr15:90164723 chr15:90164725 stopgain 0.047 0 23 hm5C_associated_SNPs_60183 0 0 1 0 1 TICRR chr15:90164781 5'GT 90164781 Upstream 57bp
chr1 3645929 3645929 1 + G T CESC 3645927 + 3645907 3645947 41 ACTTTGAGATCCTGATGAAGCTGAAAGAGAGCCTGGAGCTG ACTTTGAGATCCTGATGAAGCTTAAAGAGAGCCTGGAGCTG < 41bp 0.821733958421794 0.552897948895006 0.18986493 0.07525748 prediction 0.537672019053576 Functional Loss - TP73 ENSG00000078900 CDS Human protein_coding chr1:3645927 chr1:3645929 synonymous SNV . 0 23 hm5C_associated_SNPs_60185 0 0 0 0 2 TP73 chr1:3645891 3'AG 3645891 Downstream 39bp
chr1 3645929 3645929 1 + G T CESC 3645927 + 3645907 3645947 41 ACTTTGAGATCCTGATGAAGCTGAAAGAGAGCCTGGAGCTG ACTTTGAGATCCTGATGAAGCTTAAAGAGAGCCTGGAGCTG < 41bp 0.821733958421794 0.552897948895006 0.18986493 0.07525748 prediction 0.537672019053576 Functional Loss - TP73 ENSG00000078900 CDS Human protein_coding chr1:3645927 chr1:3645929 synonymous SNV . 0 23 hm5C_associated_SNPs_60185 0 0 0 0 2 TP73 chr1:3646012 5'GT 3646012 Upstream 84bp
chr17 4646642 4646642 1 + C T COAD 4646640 + 4646620 4646660 41 CAAAGAGGCCTTCCTGGCCTCTCGGGGCCTCACTCGTGGCT CAAAGAGGCCTTCCTGGCCTCTTGGGGCCTCACTCGTGGCT < 41bp 0.785287803323729 0.516453487189969 0.40971905 0.32805657 prediction 0.537668632267521 Functional Loss - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4646640 chr17:4646642 nonsynonymous SNV 0.979 4 23 hm5C_associated_SNPs_60186 0 0 0 0 1 ZMYND15 chr17:4646598 3'AG 4646598 Downstream 45bp
chr1 2493124 2493124 1 + G T LIHC 2493122 + 2493102 2493142 41 ACTCCCGCAGGTGCAGCTGGCTGGTGACGAAGGCCGGAGCT ACTCCCGCAGGTGCAGCTGGCTTGTGACGAAGGCCGGAGCT < 41bp 0.866400792690024 0.597574095515613 0.88228905 0.27609742 prediction 0.537653394348822 Functional Loss - TNFRSF14 ENSG00000157873 CDS Human protein_coding chr1:2493122 chr1:2493124 synonymous SNV . 0 23 hm5C_associated_SNPs_60190 0 0 1 0 1 TNFRSF14 chr1:2493112 3'AG 2493112 Downstream 13bp
chr3 133185734 133185734 1 + G T rs146972354 133185731 + 133185711 133185751 41 GAGAAGCTGGCAGCTGCCCTCAGGGTGGAGTTACACAACAC GAGAAGCTGGCAGCTGCCCTCAGTGTGGAGTTACACAACAC < 41bp 0.906364158039923 0.637560133860836 0.9484438 0.6641029 prediction 0.537608048358174 Functional Loss - BFSP2 ENSG00000170819 CDS Human protein_coding chr3:133185731 chr3:133185734 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_60193 0 0 0 0 2 BFSP2 chr3:133185672 3'AG 133185672 Downstream 63bp
chr3 133185734 133185734 1 + G T rs146972354 133185731 + 133185711 133185751 41 GAGAAGCTGGCAGCTGCCCTCAGGGTGGAGTTACACAACAC GAGAAGCTGGCAGCTGCCCTCAGTGTGGAGTTACACAACAC < 41bp 0.906364158039923 0.637560133860836 0.9484438 0.6641029 prediction 0.537608048358174 Functional Loss - BFSP2 ENSG00000170819 CDS Human protein_coding chr3:133185731 chr3:133185734 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_60193 0 0 0 0 2 BFSP2 chr3:133185803 5'GT 133185803 Upstream 70bp
chr11 82917163 82917163 1 + G T GBM 82917161 + 82917141 82917181 41 CGTAACAACGAGAGGTTGGACAGCATCTCACATAGCTGCAA CGTAACAACGAGAGGTTGGACATCATCTCACATAGCTGCAA < 41bp 0.857196084207296 0.588393300053474 0.46654624 0.40696055 prediction 0.537605568307644 Functional Loss - ANKRD42 ENSG00000137494 CDS Human protein_coding chr11:82917161 chr11:82917163 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_60194 0 0 1 0 1 ANKRD42 chr11:82917207 5'GT 82917207 Upstream 45bp
chr3 11059622 11059622 1 + G T LUAD 11059620 + 11059600 11059640 41 CTGGGCCAGTACACCTCCATCGGGGGGCTAGGGGTATGGAA CTGGGCCAGTACACCTCCATCGTGGGGCTAGGGGTATGGAA < 41bp 0.883458343691724 0.614657399062056 0.9754857 0.9566744 prediction 0.537601889259335 Functional Loss - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11059620 chr3:11059622 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_60195 0 0 0 0 1 SLC6A1 chr3:11059529 3'AG 11059529 Downstream 94bp
chr22 42950004 42950004 1 + A C rs140910717 42950000 + 42949980 42950020 41 AGCCAGGCGTGAGGGAGTGACAGCAGCGCATTCGCGGGACG AGCCAGGCGTGAGGGAGTGACAGCCGCGCATTCGCGGGACG < 41bp 0.891705971730602 0.622907428827678 0.8323398 0.73509336 prediction 0.537597085805847 Functional Loss - SERHL2 ENSG00000183569 UTR5 Human protein_coding chr22:42950000 chr22:42950004 . . 0 25 hm5C_associated_SNPs_60196 0 0 1 0 1 SERHL2 chr22:42950048 5'GT 42950048 Upstream 45bp
chr4 146031360 146031360 1 + C T SKCM 146031358 + 146031338 146031378 41 CCTAAAAGCCATCATCAAACCTCAATATGTAGACCAGATTC CCTAAAAGCCATCATCAAACCTTAATATGTAGACCAGATTC < 41bp 0.77412864683755 0.505340949157553 0.104439735 0.05728677 prediction 0.537575395359993 Functional Loss - ABCE1 ENSG00000164163 CDS Human protein_coding chr4:146031358 chr4:146031360 stopgain 0.998 1 23 hm5C_associated_SNPs_60198 0 0 1 0 1 ABCE1 chr4:146031392 5'GT 146031392 Upstream 33bp
chr16 71423712 71423712 1 + G T LUAD 71423710 + 71423690 71423730 41 CGTCATGTCCTTGGCAGAGGCAGGGAAGCTCTACCGCAAGG CGTCATGTCCTTGGCAGAGGCATGGAAGCTCTACCGCAAGG < 41bp 0.863368798959321 0.594582688576369 0.93224 0.17486876 prediction 0.537572220765905 Functional Loss - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71423710 chr16:71423712 nonsynonymous SNV 0.889 5 23 hm5C_associated_SNPs_60199 0 0 0 0 1 CALB2 chr16:71423652 3'AG 71423652 Downstream 61bp
chrX 15540482 15540482 1 + G T THCA 15540479 + 15540459 15540499 41 CCCTCCAAAGCTGAAGATACCTCGGGCAGTTCCTGTTCTCA CCCTCCAAAGCTGAAGATACCTCTGGCAGTTCCTGTTCTCA < 41bp 0.768746798730809 0.382036444271085 0.05710405 0.06925222 prediction 0.537493597461619 Functional Loss - BMX ENSG00000102010 CDS Human protein_coding chrX:15540479 chrX:15540482 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_60203 0 0 0 0 1 BMX chrX:15540469 3'AG 15540469 Downstream 14bp
chr3 158363451 158363451 1 + G T COAD 158363449 + 158363429 158363469 41 GGCCTGCCGATGGTCTTCATCAGGGGTGATTCCTAATGAAA GGCCTGCCGATGGTCTTCATCATGGGTGATTCCTAATGAAA < 41bp 0.848112928220077 0.579367547934578 0.96896917 0.92666537 prediction 0.537490760570996 Functional Loss - GFM1 ENSG00000168827 CDS Human protein_coding chr3:158363449 chr3:158363451 nonsynonymous SNV 0.986 3 23 hm5C_associated_SNPs_60204 0 0 1 0 1 GFM1 chr3:158363418 3'AG 158363418 Downstream 34bp
chr5 7690871 7690871 1 + G C BLCA 7690867 + 7690847 7690887 41 AGATGAAAGCGGAGATCATCCAGAGGCTGCAGGGCCCCAAG AGATGAAAGCGGAGATCATCCAGACGCTGCAGGGCCCCAAG < 41bp 0.768741395946941 0.485146425178662 0.91192377 0.89376926 prediction 0.537482791893882 Functional Loss - ADCY2 ENSG00000078295 CDS Human protein_coding chr5:7690867 chr5:7690871 nonsynonymous SNV 0.986 2 25 hm5C_associated_SNPs_60205 0 0 0 0 2 ADCY2 chr5:7690804 3'AG 7690804 Downstream 68bp
chr5 7690871 7690871 1 + G C BLCA 7690867 + 7690847 7690887 41 AGATGAAAGCGGAGATCATCCAGAGGCTGCAGGGCCCCAAG AGATGAAAGCGGAGATCATCCAGACGCTGCAGGGCCCCAAG < 41bp 0.768741395946941 0.485146425178662 0.91192377 0.89376926 prediction 0.537482791893882 Functional Loss - ADCY2 ENSG00000078295 CDS Human protein_coding chr5:7690867 chr5:7690871 nonsynonymous SNV 0.986 2 25 hm5C_associated_SNPs_60205 0 0 0 0 2 ADCY2 chr5:7690952 5'GT 7690952 Upstream 82bp
chr21 46624492 46624492 1 + G T LUAD 46624489 + 46624469 46624509 41 GCTGGAACGTGGTGGGCATCCAGGGATCCCTGCTCAGCATT GCTGGAACGTGGTGGGCATCCAGTGATCCCTGCTCAGCATT < 41bp 0.901323821167089 0.632590869810578 0.9383199 0.20892447 prediction 0.537465902713023 Functional Loss - ADARB1 ENSG00000197381 CDS Human protein_coding chr21:46624489 chr21:46624492 stopgain 0.989 1 24 hm5C_associated_SNPs_60208 0 0 1 0 1 ADARB1 chr21:46624470 3'AG 46624470 Downstream 23bp
chr16 841339 841339 1 + G T STAD 841336 + 841316 841356 41 GCTGGAGGAGATGCTGGAGGCTGGGCTGGACCCGAGCCAGC GCTGGAGGAGATGCTGGAGGCTGTGCTGGACCCGAGCCAGC < 41bp 0.768728951320218 0.466182956980431 0.88171256 0.6384535 prediction 0.537457902640436 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:841336 chr16:841339 nonsynonymous SNV 0.630 2 24 hm5C_associated_SNPs_60209 0 0 1 0 1 CHTF18 chr16:841370 5'GT 841370 Upstream 32bp
chr20 330327 330327 1 + G T HNSC 330324 + 330304 330344 41 ATCGTTCCTGCAGCTGCAGCCGCGGCCCCAGCGTGGAGGAT ATCGTTCCTGCAGCTGCAGCCGCTGCCCCAGCGTGGAGGAT < 41bp 0.768715360808922 0.378100332172828 0.866611 0.46497905 prediction 0.537430721617844 Functional Loss - NRSN2 ENSG00000125841 CDS Human protein_coding chr20:330324 chr20:330327 nonsynonymous SNV 0.254 3 24 hm5C_associated_SNPs_60210 0 0 1 0 1 NRSN2 chr20:330282 3'AG 330282 Downstream 46bp
chr19 41268853 41268853 1 + G T LUAD 41268851 + 41268831 41268871 41 CCCGCATTATGCACCACATGCCGGGCCAGCCGCCCTACATG CCCGCATTATGCACCACATGCCTGGCCAGCCGCCCTACATG < 41bp 0.768711952127746 0.41227278310489 0.8742756 0.13522652 prediction 0.537423904255492 Functional Loss - SNRPA ENSG00000077312 CDS Human protein_coding chr19:41268851 chr19:41268853 synonymous SNV . 0 23 hm5C_associated_SNPs_60212 0 0 1 0 1 SNRPA chr19:41268806 3'AG 41268806 Downstream 48bp
chr15 45436256 45436256 1 + G T UCEC 45436253 + 45436233 45436273 41 GCTTTGGAATGGCAAGGCCACAAGGAGCCCTGCCGGCCCGT GCTTTGGAATGGCAAGGCCACAATGAGCCCTGCCGGCCCGT < 41bp 0.768708667470336 0.374896176715964 0.9313796 0.26003927 prediction 0.537417334940672 Functional Loss - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45436253 chr15:45436256 nonsynonymous SNV 0.936 1 24 hm5C_associated_SNPs_60213 0 0 0 0 1 DUOX1 chr15:45436234 3'AG 45436234 Downstream 23bp
chr1 227947142 227947142 1 + G T GBM 227947139 + 227947119 227947159 41 TGCATTGGTGCTCAGAAGCGCAAGAACCTCTTCCCCCGCAG TGCATTGGTGCTCAGAAGCGCAATAACCTCTTCCCCCGCAG < 41bp 0.768678392442732 0.369830571690862 0.7798575 0.22951561 prediction 0.537356784885464 Functional Loss - SNAP47 ENSG00000143740 CDS Human protein_coding chr1:227947139 chr1:227947142 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_60215 0 0 1 0 1 SNAP47 chr1:227947186 5'GT 227947186 Upstream 45bp
chr11 118245671 118245671 1 + C T SKCM 118245669 + 118245649 118245689 41 GAAGAACTTACTCCAGCTCTCTCCAGAAACCAAACACTGTA GAAGAACTTACTCCAGCTCTCTTCAGAAACCAAACACTGTA < 41bp 0.768668229572105 0.472831836483028 0.9353024 0.023954183 prediction 0.537336459144209 Functional Loss - UBE4A ENSG00000110344 CDS Human protein_coding chr11:118245669 chr11:118245671 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_60217 0 0 1 0 1 UBE4A chr11:118245611 3'AG 118245611 Downstream 61bp
chr8 69104700 69104700 1 + C T SKCM 69104698 + 69104678 69104718 41 GTTGGACTGCTGTCAGTTTCCTCGGAGCTGTGCAACAGGCT GTTGGACTGCTGTCAGTTTCCTTGGAGCTGTGCAACAGGCT < 41bp 0.781892704350853 0.513226070033347 0.1614038 0.12697387 prediction 0.537333268635011 Functional Loss - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69104698 chr8:69104700 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_60218 0 0 0 0 1 PREX2 chr8:69104760 5'GT 69104760 Upstream 61bp
chr14 102391575 102391575 1 + G T UCEC 102391573 + 102391553 102391593 41 AAAGCCTTGGAAGCTCACTGCAGGGCCGATGAGCTGGCCTC AAAGCCTTGGAAGCTCACTGCATGGCCGATGAGCTGGCCTC < 41bp 0.862382679965439 0.593722566843043 0.9004691 0.84262 prediction 0.537320226244792 Functional Loss - PPP2R5C ENSG00000078304 CDS Human protein_coding chr14:102391573 chr14:102391575 nonsynonymous SNV 0.976 4 23 hm5C_associated_SNPs_60220 0 0 1 0 1 PPP2R5C chr14:102391478 3'AG 102391478 Downstream 98bp
chr3 183975448 183975448 1 + C T SKCM 183975446 + 183975426 183975466 41 GTGCTTCTTTTGATGTGGTGCTCGAGAAGGGCACGCTGGAT GTGCTTCTTTTGATGTGGTGCTTGAGAAGGGCACGCTGGAT < 41bp 0.776342813189874 0.507683776106241 0.15466696 0.15361157 prediction 0.537318074167267 Functional Loss - ECE2 ENSG00000145194 CDS Human protein_coding chr3:183975446 chr3:183975448 synonymous SNV . 0 23 hm5C_associated_SNPs_60221 0 0 1 0 1 ECE2 chr3:183975544 5'GT 183975544 Upstream 97bp
chr14 99183486 99183486 1 + G T BLCA 99183483 + 99183463 99183503 41 AGAAATCAGAATGCCAGAGACATGAAGAAACTTCTCCAGGG AGAAATCAGAATGCCAGAGACATTAAGAAACTTCTCCAGGG < 41bp 0.768647032093858 0.390259030621029 0.168224 0.48100412 prediction 0.537294064187716 Functional Loss - C14orf177 ENSG00000176605 CDS Human protein_coding chr14:99183483 chr14:99183486 stopgain 0.002 0 24 hm5C_associated_SNPs_60225 0 0 0 0 1 C14orf177 chr14:99183433 3'AG 99183433 Downstream 54bp
chr14 32295907 32295907 1 + G C CESC 32295903 + 32295883 32295923 41 ACAAGGGTGCTGAGATGTTTCGCAGAGTCCACGTGCCCGTA ACAAGGGTGCTGAGATGTTTCGCACAGTCCACGTGCCCGTA < 41bp 0.768645500887721 0.49017875955511 0.31230497 0.123719424 prediction 0.537291001775443 Functional Loss - NUBPL ENSG00000151413 CDS Human protein_coding chr14:32295903 chr14:32295907 nonsynonymous SNV 0.994 2 25 hm5C_associated_SNPs_60226 0 0 1 0 2 NUBPL chr14:32295835 3'AG 32295835 Downstream 73bp
chr14 32295907 32295907 1 + G C CESC 32295903 + 32295883 32295923 41 ACAAGGGTGCTGAGATGTTTCGCAGAGTCCACGTGCCCGTA ACAAGGGTGCTGAGATGTTTCGCACAGTCCACGTGCCCGTA < 41bp 0.768645500887721 0.49017875955511 0.31230497 0.123719424 prediction 0.537291001775443 Functional Loss - NUBPL ENSG00000151413 CDS Human protein_coding chr14:32295903 chr14:32295907 nonsynonymous SNV 0.994 2 25 hm5C_associated_SNPs_60226 0 0 1 0 2 NUBPL chr14:32295920 5'GT 32295920 Upstream 14bp
chr16 30095999 30095999 1 + G T BLCA 30095997 + 30095977 30096017 41 TCCGCATCAGACACCACAGGCTGGGGCGTGAGCCCCCGAGG TCCGCATCAGACACCACAGGCTTGGGCGTGAGCCCCCGAGG < 41bp 0.87982263217557 0.611177633131528 0.9018322 0.15602097 prediction 0.537289998088085 Functional Loss - PPP4C ENSG00000149923 CDS Human protein_coding chr16:30095997 chr16:30095999 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_60227 0 0 1 0 1 PPP4C chr16:30095987 3'AG 30095987 Downstream 13bp
chr17 34956134 34956134 1 + C T UCEC 34956132 + 34956112 34956152 41 GGTGTGGTGGAGACACAATTCGCCTTCAAACTCCACGACAA GGTGTGGTGGAGACACAATTCGTCTTCAAACTCCACGACAA < 41bp 0.775062584416389 0.506430121888119 0.054480284 0.058095664 prediction 0.53726492505654 Functional Loss - DHRS11 ENSG00000108272 CDS Human other chr17:34956132 chr17:34956134 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_60228 0 0 1 0 2 DHRS11 chr17:34956100 3'AG 34956100 Downstream 35bp
chr17 34956134 34956134 1 + C T UCEC 34956132 + 34956112 34956152 41 GGTGTGGTGGAGACACAATTCGCCTTCAAACTCCACGACAA GGTGTGGTGGAGACACAATTCGTCTTCAAACTCCACGACAA < 41bp 0.775062584416389 0.506430121888119 0.054480284 0.058095664 prediction 0.53726492505654 Functional Loss - DHRS11 ENSG00000108272 CDS Human other chr17:34956132 chr17:34956134 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_60228 0 0 1 0 2 DHRS11 chr17:34956192 5'GT 34956192 Upstream 59bp
chr14 62259546 62259546 1 + A C COAD 62259542 + 62259522 62259562 41 TAGGCAATGTGCAGAATATACACAAGGAAGATAAACCTTTA TAGGCAATGTGCAGAATATACACACGGAAGATAAACCTTTA < 41bp 0.768613307989335 0.379255828178538 0.05264443 0.026103586 prediction 0.537226615978671 Functional Loss - SNAPC1 ENSG00000023608 CDS Human protein_coding chr14:62259542 chr14:62259546 nonsynonymous SNV 0.440 1 25 hm5C_associated_SNPs_60230 0 0 1 0 2 SNAPC1 chr14:62259525 3'AG 62259525 Downstream 22bp
chr14 62259546 62259546 1 + A C COAD 62259542 + 62259522 62259562 41 TAGGCAATGTGCAGAATATACACAAGGAAGATAAACCTTTA TAGGCAATGTGCAGAATATACACACGGAAGATAAACCTTTA < 41bp 0.768613307989335 0.379255828178538 0.05264443 0.026103586 prediction 0.537226615978671 Functional Loss - SNAPC1 ENSG00000023608 CDS Human protein_coding chr14:62259542 chr14:62259546 nonsynonymous SNV 0.440 1 25 hm5C_associated_SNPs_60230 0 0 1 0 2 SNAPC1 chr14:62259620 5'GT 62259620 Upstream 75bp
chr6 7404697 7404697 1 + C T PAAD 7404695 + 7404675 7404715 41 CCAGTTATCAGAATCCAAGGCTCGGGAGTTGTACCTGCAGG CCAGTTATCAGAATCCAAGGCTTGGGAGTTGTACCTGCAGG < 41bp 0.774344103408211 0.505736866598206 0.15904987 0.23161376 prediction 0.537214473620011 Functional Loss - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7404695 chr6:7404697 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_60231 0 0 1 0 2 RIOK1 chr6:7404651 3'AG 7404651 Downstream 47bp
chr6 7404697 7404697 1 + C T PAAD 7404695 + 7404675 7404715 41 CCAGTTATCAGAATCCAAGGCTCGGGAGTTGTACCTGCAGG CCAGTTATCAGAATCCAAGGCTTGGGAGTTGTACCTGCAGG < 41bp 0.774344103408211 0.505736866598206 0.15904987 0.23161376 prediction 0.537214473620011 Functional Loss - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7404695 chr6:7404697 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_60231 0 0 1 0 2 RIOK1 chr6:7404788 5'GT 7404788 Upstream 92bp
chr2 207814364 207814364 1 + A T LUSC 207814360 + 207814340 207814380 41 GATCCTTAGCCCAACACAGACAAGAGATTGTGGACAAGTCA GATCCTTAGCCCAACACAGACAAGTGATTGTGGACAAGTCA < 41bp 0.768602424167828 0.473011864367001 0.25928324 0.19958648 prediction 0.537204848335656 Functional Loss - CPO ENSG00000144410 CDS Human protein_coding chr2:207814360 chr2:207814364 nonsynonymous SNV 0.444 1 25 hm5C_associated_SNPs_60233 0 0 0 0 2 CPO chr2:207814341 3'AG 207814341 Downstream 24bp
chr2 207814364 207814364 1 + A T LUSC 207814360 + 207814340 207814380 41 GATCCTTAGCCCAACACAGACAAGAGATTGTGGACAAGTCA GATCCTTAGCCCAACACAGACAAGTGATTGTGGACAAGTCA < 41bp 0.768602424167828 0.473011864367001 0.25928324 0.19958648 prediction 0.537204848335656 Functional Loss - CPO ENSG00000144410 CDS Human protein_coding chr2:207814360 chr2:207814364 nonsynonymous SNV 0.444 1 25 hm5C_associated_SNPs_60233 0 0 0 0 2 CPO chr2:207814437 5'GT 207814437 Upstream 74bp
chr5 176733505 176733505 1 + G C LUSC 176733501 + 176733481 176733521 41 GGAGACGGCACTGGCAGCTACAGAGAAGGCCAAGGACCTCG GGAGACGGCACTGGCAGCTACAGACAAGGCCAAGGACCTCG < 41bp 0.787339834534427 0.518750724545598 0.3510651 0.08460373 prediction 0.537178219977657 Functional Loss - PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176733501 chr5:176733505 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_60237 0 0 0 0 2 PRELID1 chr5:176733423 3'AG 176733423 Downstream 83bp
chr5 176733505 176733505 1 + G C LUSC 176733501 + 176733481 176733521 41 GGAGACGGCACTGGCAGCTACAGAGAAGGCCAAGGACCTCG GGAGACGGCACTGGCAGCTACAGACAAGGCCAAGGACCTCG < 41bp 0.787339834534427 0.518750724545598 0.3510651 0.08460373 prediction 0.537178219977657 Functional Loss - PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176733501 chr5:176733505 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_60237 0 0 0 0 2 PRELID1 chr5:176733456 3'AG 176733456 Downstream 50bp
chr7 31125030 31125030 1 + G T UCEC 31125028 + 31125008 31125048 41 ACTGGATTCTGTATGCGGAGCAGGACAGCAACCACTGCTTC ACTGGATTCTGTATGCGGAGCATGACAGCAACCACTGCTTC < 41bp 0.768576039490055 0.41779851524387 0.43258643 0.12102303 prediction 0.53715207898011 Functional Loss - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31125028 chr7:31125030 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_60240 0 0 1 0 1 ADCYAP1R1 chr7:31125057 5'GT 31125057 Upstream 28bp
chr20 62858781 62858781 1 + G C LUAD 62858780 + 62858760 62858800 41 CTCTGCAGGTGCCCCACGCCCGGCTGTGACGGCTCTGGCCA CTCTGCAGGTGCCCCACGCCCCGCTGTGACGGCTCTGGCCA < 41bp 0.768573976153114 0.449584587767337 0.6720089 0.22064763 prediction 0.537147952306227 Functional Loss - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62858780 chr20:62858781 nonsynonymous SNV 0.925 4 22 hm5C_associated_SNPs_60241 0 0 0 0 2 MYT1 chr20:62858768 3'AG 62858768 Downstream 14bp
chr20 62858781 62858781 1 + G C LUAD 62858780 + 62858760 62858800 41 CTCTGCAGGTGCCCCACGCCCGGCTGTGACGGCTCTGGCCA CTCTGCAGGTGCCCCACGCCCCGCTGTGACGGCTCTGGCCA < 41bp 0.768573976153114 0.449584587767337 0.6720089 0.22064763 prediction 0.537147952306227 Functional Loss - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62858780 chr20:62858781 nonsynonymous SNV 0.925 4 22 hm5C_associated_SNPs_60241 0 0 0 0 2 MYT1 chr20:62858830 5'GT 62858830 Upstream 50bp
chr20 62587639 62587639 1 - C G HNSC 62587643 - 62587623 62587663 41 AGACACACCAGGCCGGCAGGCTGAGAAAAGCGAGACCGCGT AGACACACCAGGCCGGCAGGCTGACAAAAGCGAGACCGCGT < 41bp 0.808575225033463 0.540006980909468 0.8811506 0.67353344 prediction 0.537136488247991 Functional Loss - UCKL1 ENSG00000198276 CDS Human protein_coding chr20:62587643 chr20:62587639 nonsynonymous SNV 0.014 0 25 hm5C_associated_SNPs_60243 0 0 1 0 1 UCKL1 chr20:62587613 5'GT 62587613 Upstream 27bp
chr1 158325832 158325832 1 + G T CESC 158325830 + 158325810 158325850 41 GGATGTGGCGGCTGGGGAGGCAGCTGGCCTGTCCTGTCGGG GGATGTGGCGGCTGGGGAGGCATCTGGCCTGTCCTGTCGGG < 41bp 0.839612325878932 0.571047768250015 0.8768635 0.62470096 prediction 0.537129115257833 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325830 chr1:158325832 nonsynonymous SNV 0.160 0 23 hm5C_associated_SNPs_60244 0 0 0 0 1 CD1E chr1:158325895 5'GT 158325895 Upstream 64bp
chr5 96350769 96350769 1 + G T LUAD 96350767 + 96350747 96350787 41 TCTATAACCTCCTTGAAAAACTGGGATACATGGATCTGGCC TCTATAACCTCCTTGAAAAACTTGGATACATGGATCTGGCC < 41bp 0.768563483712277 0.435598166288602 0.44768107 0.08502841 prediction 0.537126967424554 Functional Loss - LNPEP ENSG00000113441 CDS Human protein_coding chr5:96350767 chr5:96350769 synonymous SNV . 0 23 hm5C_associated_SNPs_60245 0 0 1 0 1 LNPEP chr5:96350799 5'GT 96350799 Upstream 31bp
chr16 67035233 67035233 1 + G T STAD 67035230 + 67035210 67035250 41 GCACGGACGACAGCCACGCGCGCGGGAACTGGGGGCTGCTG GCACGGACGACAGCCACGCGCGCTGGAACTGGGGGCTGCTG < 41bp 0.907764307942486 0.639215054237792 0.8261781 0.23888007 prediction 0.537098507409388 Functional Loss - CES4A ENSG00000172824 CDS Human protein_coding chr16:67035230 chr16:67035233 nonsynonymous SNV 0.027 3 24 hm5C_associated_SNPs_60247 0 0 0 0 1 CES4A chr16:67035211 3'AG 67035211 Downstream 23bp
chr3 50214233 50214233 1 + C T rs150956613 50214231 + 50214211 50214251 41 TCTACCTGGAGCCTGAGCGACTCGAGTCAGGGAAGGGCAAG TCTACCTGGAGCCTGAGCGACTTGAGTCAGGGAAGGGCAAG < 41bp 0.803537728898519 0.534993973155427 0.360657 0.24365649 prediction 0.537087511486183 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50214231 chr3:50214233 synonymous SNV . 0 23 hm5C_associated_SNPs_60249 0 0 0 0 2 SEMA3F chr3:50214201 3'AG 50214201 Downstream 33bp
chr3 50214233 50214233 1 + C T rs150956613 50214231 + 50214211 50214251 41 TCTACCTGGAGCCTGAGCGACTCGAGTCAGGGAAGGGCAAG TCTACCTGGAGCCTGAGCGACTTGAGTCAGGGAAGGGCAAG < 41bp 0.803537728898519 0.534993973155427 0.360657 0.24365649 prediction 0.537087511486183 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50214231 chr3:50214233 synonymous SNV . 0 23 hm5C_associated_SNPs_60249 0 0 0 0 2 SEMA3F chr3:50214294 5'GT 50214294 Upstream 62bp
chr1 158324373 158324373 1 + G T LUAD 158324370 + 158324350 158324390 41 CCCATGGAAACTTCAGCAAGCAGGAGCTGAAAAACTTACAG CCCATGGAAACTTCAGCAAGCAGTAGCTGAAAAACTTACAG < 41bp 0.865845460678752 0.597313884917996 0.8235893 0.15635976 prediction 0.537063151521513 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158324370 chr1:158324373 stopgain 0.070 0 24 hm5C_associated_SNPs_60251 0 0 0 0 1 CD1E chr1:158324463 5'GT 158324463 Upstream 91bp
chr2 242135202 242135202 1 + G T STAD 242135200 + 242135180 242135220 41 CGGGACAGAACAGACATGCACAGGACCTGGCGGGAGACTTT CGGGACAGAACAGACATGCACATGACCTGGCGGGAGACTTT < 41bp 0.768505946771594 0.435958387332067 0.741454 0.18241087 prediction 0.537011893543189 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242135200 chr2:242135202 nonsynonymous SNV 0.107 2 23 hm5C_associated_SNPs_60254 0 0 0 0 3 ANO7 chr2:242135118 3'AG 242135118 Downstream 85bp
chr2 242135202 242135202 1 + G T STAD 242135200 + 242135180 242135220 41 CGGGACAGAACAGACATGCACAGGACCTGGCGGGAGACTTT CGGGACAGAACAGACATGCACATGACCTGGCGGGAGACTTT < 41bp 0.768505946771594 0.435958387332067 0.741454 0.18241087 prediction 0.537011893543189 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242135200 chr2:242135202 nonsynonymous SNV 0.107 2 23 hm5C_associated_SNPs_60254 0 0 0 0 3 ANO7 chr2:242135121 3'AG 242135121 Downstream 82bp
chr2 242135202 242135202 1 + G T STAD 242135200 + 242135180 242135220 41 CGGGACAGAACAGACATGCACAGGACCTGGCGGGAGACTTT CGGGACAGAACAGACATGCACATGACCTGGCGGGAGACTTT < 41bp 0.768505946771594 0.435958387332067 0.741454 0.18241087 prediction 0.537011893543189 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242135200 chr2:242135202 nonsynonymous SNV 0.107 2 23 hm5C_associated_SNPs_60254 0 0 0 0 3 ANO7 chr2:242135260 5'GT 242135260 Upstream 59bp
chr12 125626689 125626689 1 + G T LUAD 125626687 + 125626667 125626707 41 TGCCGTCAAACAGATCATCGCTGGAAAAGCCGTGGAGCAAG TGCCGTCAAACAGATCATCGCTTGAAAAGCCGTGGAGCAAG < 41bp 0.849148725867847 0.580644404278052 0.3427869 0.11921093 prediction 0.53700864317959 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125626687 chr12:125626689 stopgain 0.019 1 23 hm5C_associated_SNPs_60255 0 0 1 0 1 AACS chr12:125626638 3'AG 125626638 Downstream 52bp
chr5 131670540 131670540 1 - G A COAD 131670542 - 131670522 131670562 41 TATAACGCCTGGGCAGGGTTCGCAATAGCAGCCAGGCTGTA TATAACGCCTGGGCAGGGTTCGTAATAGCAGCCAGGCTGTA < 41bp 0.768497082871611 0.492343535645832 0.19399282 0.19526684 prediction 0.536994165743222 Functional Loss - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131670542 chr5:131670540 synonymous SNV . 0 23 hm5C_associated_SNPs_60256 0 0 0 0 2 SLC22A4 chr5:131670478 5'GT 131670478 Upstream 63bp
chr5 131670540 131670540 1 - G A COAD 131670542 - 131670522 131670562 41 TATAACGCCTGGGCAGGGTTCGCAATAGCAGCCAGGCTGTA TATAACGCCTGGGCAGGGTTCGTAATAGCAGCCAGGCTGTA < 41bp 0.768497082871611 0.492343535645832 0.19399282 0.19526684 prediction 0.536994165743222 Functional Loss - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131670542 chr5:131670540 synonymous SNV . 0 23 hm5C_associated_SNPs_60256 0 0 0 0 2 SLC22A4 chr5:131670619 3'AG 131670619 Downstream 80bp
chr8 126445584 126445584 1 + A T LUAD 126445580 + 126445560 126445600 41 TGTTTCCCATTAAACACTACCAGGACAAAATCAGGCCTTAC TGTTTCCCATTAAACACTACCAGGTCAAAATCAGGCCTTAC < 41bp 0.768491799787839 0.453933652515761 0.88282824 0.915787 prediction 0.536983599575679 Functional Loss - TRIB1 ENSG00000173334 CDS Human protein_coding chr8:126445580 chr8:126445584 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_60257 0 0 1 0 1 TRIB1 chr8:126445559 3'AG 126445559 Downstream 26bp
chr6 47759675 47759675 1 + G T LUAD 47759672 + 47759652 47759692 41 TCACCATGACTGCTGTCAGCCTGGATCGATATTTGAAAATC TCACCATGACTGCTGTCAGCCTGTATCGATATTTGAAAATC < 41bp 0.76848911620138 0.460362863725218 0.20810783 0.018632203 prediction 0.53697823240276 Functional Loss - OPN5 ENSG00000124818 CDS Human protein_coding chr6:47759672 chr6:47759675 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_60258 0 0 0 0 1 OPN5 chr6:47759708 5'GT 47759708 Upstream 34bp
chr1 43663269 43663269 1 + G T SARC 43663267 + 43663247 43663287 41 TTTGATGTATCCATTGCACTCAGCACCCATCACCGGTCTAG TTTGATGTATCCATTGCACTCATCACCCATCACCGGTCTAG < 41bp 0.768481755988713 0.430132539825227 0.32442075 0.07390332 prediction 0.536963511977426 Functional Loss - CFAP57 ENSG00000243710 CDS Human protein_coding chr1:43663267 chr1:43663269 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_60259 0 0 0 0 2 CFAP57 chr1:43663224 3'AG 43663224 Downstream 46bp
chr1 43663269 43663269 1 + G T SARC 43663267 + 43663247 43663287 41 TTTGATGTATCCATTGCACTCAGCACCCATCACCGGTCTAG TTTGATGTATCCATTGCACTCATCACCCATCACCGGTCTAG < 41bp 0.768481755988713 0.430132539825227 0.32442075 0.07390332 prediction 0.536963511977426 Functional Loss - CFAP57 ENSG00000243710 CDS Human protein_coding chr1:43663267 chr1:43663269 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_60259 0 0 0 0 2 CFAP57 chr1:43663363 5'GT 43663363 Upstream 95bp
chr21 45786654 45786654 1 + G T DLBC 45786652 + 45786632 45786672 41 CGCAGTACGTCCGAGTCTCCCAGGACACGCCCTCCAGCGTG CGCAGTACGTCCGAGTCTCCCATGACACGCCCTCCAGCGTG < 41bp 0.871928566537784 0.603448610156908 0.51698154 0.05964291 prediction 0.536959912761752 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45786652 chr21:45786654 nonsynonymous SNV 0.122 0 23 hm5C_associated_SNPs_60261 0 0 0 0 1 TRPM2 chr21:45786637 3'AG 45786637 Downstream 18bp
chr17 8166274 8166274 1 + G T LUAD 8166272 + 8166252 8166292 41 AAGGTTGGAGGTCCCGTCTACAGGATTGGAGTTGGAGGTGG AAGGTTGGAGGTCCCGTCTACATGATTGGAGTTGGAGGTGG < 41bp 0.873873079003733 0.605404160879659 0.3526298 0.123386085 prediction 0.536937836248147 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8166272 chr17:8166274 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_60262 0 0 1 0 1 PFAS chr17:8166311 5'GT 8166311 Upstream 38bp
chr21 33318447 33318447 1 + G T UCEC 33318445 + 33318425 33318465 41 GCTGCACCTGAACTGCTCGCCAGGAAGAAATACGGCCCCAA GCTGCACCTGAACTGCTCGCCATGAAGAAATACGGCCCCAA < 41bp 0.768451134004356 0.418975947927158 0.88814336 0.13707197 prediction 0.536902268008713 Functional Loss - HUNK ENSG00000142149 CDS Human protein_coding chr21:33318445 chr21:33318447 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_60264 0 0 0 0 2 HUNK chr21:33318348 3'AG 33318348 Downstream 100bp
chr21 33318447 33318447 1 + G T UCEC 33318445 + 33318425 33318465 41 GCTGCACCTGAACTGCTCGCCAGGAAGAAATACGGCCCCAA GCTGCACCTGAACTGCTCGCCATGAAGAAATACGGCCCCAA < 41bp 0.768451134004356 0.418975947927158 0.88814336 0.13707197 prediction 0.536902268008713 Functional Loss - HUNK ENSG00000142149 CDS Human protein_coding chr21:33318445 chr21:33318447 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_60264 0 0 0 0 2 HUNK chr21:33318483 5'GT 33318483 Upstream 37bp
chr12 124236880 124236880 1 + G T LUSC 124236878 + 124236858 124236898 41 GTGAGGAAGAAGTTTCATTGCTGGGAAGCCAAGATATAGAA GTGAGGAAGAAGTTTCATTGCTTGGAAGCCAAGATATAGAA < 41bp 0.768451051011954 0.441287021376295 0.21059576 0.05935365 prediction 0.536902102023908 Functional Loss - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124236878 chr12:124236880 synonymous SNV . 0 23 hm5C_associated_SNPs_60265 0 0 1 0 1 ATP6V0A2 chr12:124236949 5'GT 124236949 Upstream 70bp
chr12 31244783 31244783 1 + G T HNSC 31244781 + 31244761 31244801 41 GACACCATCACGGGCATGCACAGCGTGGAGGTCAGCGGCTC GACACCATCACGGGCATGCACATCGTGGAGGTCAGCGGCTC < 41bp 0.870267683800132 0.601830984428444 0.7935685 0.38183206 prediction 0.536873398743375 Functional Loss - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244781 chr12:31244783 nonsynonymous SNV 0.339 4 23 hm5C_associated_SNPs_60268 0 0 0 0 1 DDX11 chr12:31244805 5'GT 31244805 Upstream 23bp
chr17 20200371 20200371 1 + A T COAD 20200367 + 20200347 20200387 41 TGCCTGCCCACATCCCCTACCAGGAGCTGAATAGTCAGGAG TGCCTGCCCACATCCCCTACCAGGTGCTGAATAGTCAGGAG < 41bp 0.806761153773043 0.538345644183975 0.866632 0.91766065 prediction 0.536831019178136 Functional Loss - SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20200367 chr17:20200371 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_60273 0 0 0 0 2 SPECC1 chr17:20200274 3'AG 20200274 Downstream 98bp
chr17 20200371 20200371 1 + A T COAD 20200367 + 20200347 20200387 41 TGCCTGCCCACATCCCCTACCAGGAGCTGAATAGTCAGGAG TGCCTGCCCACATCCCCTACCAGGTGCTGAATAGTCAGGAG < 41bp 0.806761153773043 0.538345644183975 0.866632 0.91766065 prediction 0.536831019178136 Functional Loss - SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20200367 chr17:20200371 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_60273 0 0 0 0 2 SPECC1 chr17:20200390 5'GT 20200390 Upstream 20bp
chr7 77265139 77265139 1 + G T UCEC 77265137 + 77265117 77265157 41 AATGGAGTGAACTTCAAAGTCAGGAACGATCTGAACAAAAA AATGGAGTGAACTTCAAAGTCATGAACGATCTGAACAAAAA < 41bp 0.838438401896329 0.570041393575312 0.31982154 0.11399758 prediction 0.536794016642035 Functional Loss - PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77265137 chr7:77265139 nonsynonymous SNV 0.768 2 23 hm5C_associated_SNPs_60274 0 0 1 0 2 PTPN12 chr7:77265099 3'AG 77265099 Downstream 41bp
chr7 77265139 77265139 1 + G T UCEC 77265137 + 77265117 77265157 41 AATGGAGTGAACTTCAAAGTCAGGAACGATCTGAACAAAAA AATGGAGTGAACTTCAAAGTCATGAACGATCTGAACAAAAA < 41bp 0.838438401896329 0.570041393575312 0.31982154 0.11399758 prediction 0.536794016642035 Functional Loss - PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77265137 chr7:77265139 nonsynonymous SNV 0.768 2 23 hm5C_associated_SNPs_60274 0 0 1 0 2 PTPN12 chr7:77265166 5'GT 77265166 Upstream 28bp
chr3 193855564 193855564 1 + G C BLCA 193855563 + 193855543 193855583 41 ACCCGCTTCCTGTCCACGTGCGAGGGCGTTAATACCGAGGT ACCCGCTTCCTGTCCACGTGCCAGGGCGTTAATACCGAGGT < 41bp 0.839917624935893 0.571546916339292 0.9155406 0.19877243 prediction 0.536741417193202 Functional Loss - HES1 ENSG00000114315 CDS Human protein_coding chr3:193855563 chr3:193855564 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_60277 0 0 1 0 1 HES1 chr3:193855472 3'AG 193855472 Downstream 93bp
chr13 29855930 29855930 1 + C T SKCM 29855928 + 29855908 29855948 41 GGGGGCCGGCCGGGTGGCCCCTCCAGCATCCTCCAGTGTGA GGGGGCCGGCCGGGTGGCCCCTTCAGCATCCTCCAGTGTGA < 41bp 0.76836582731231 0.494262735050664 0.94581115 0.08097851 prediction 0.53673165462462 Functional Loss - MTUS2 ENSG00000132938 CDS Human protein_coding chr13:29855928 chr13:29855930 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_60278 0 0 0 0 2 MTUS2 chr13:29855841 3'AG 29855841 Downstream 90bp
chr13 29855930 29855930 1 + C T SKCM 29855928 + 29855908 29855948 41 GGGGGCCGGCCGGGTGGCCCCTCCAGCATCCTCCAGTGTGA GGGGGCCGGCCGGGTGGCCCCTTCAGCATCCTCCAGTGTGA < 41bp 0.76836582731231 0.494262735050664 0.94581115 0.08097851 prediction 0.53673165462462 Functional Loss - MTUS2 ENSG00000132938 CDS Human protein_coding chr13:29855928 chr13:29855930 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_60278 0 0 0 0 2 MTUS2 chr13:29856002 5'GT 29856002 Upstream 73bp
chr11 6503023 6503023 1 + G T BLCA 6503021 + 6503001 6503041 41 GTTGGTCTACAATCGGATGACAGAACTCTGCTTCCAGCGCT GTTGGTCTACAATCGGATGACATAACTCTGCTTCCAGCGCT < 41bp 0.868480884896552 0.60011603122846 0.42566052 0.33137345 prediction 0.536729707336183 Functional Loss - TIMM10B ENSG00000132286;ENSG00000265264 CDS Human other chr11:6503021 chr11:6503023 stopgain 1.000 1 23 hm5C_associated_SNPs_60279 0 0 1 0 2 TIMM10B chr11:6502987 3'AG 6502987 Downstream 37bp
chr11 6503023 6503023 1 + G T BLCA 6503021 + 6503001 6503041 41 GTTGGTCTACAATCGGATGACAGAACTCTGCTTCCAGCGCT GTTGGTCTACAATCGGATGACATAACTCTGCTTCCAGCGCT < 41bp 0.868480884896552 0.60011603122846 0.42566052 0.33137345 prediction 0.536729707336183 Functional Loss - TIMM10B ENSG00000132286;ENSG00000265264 CDS Human other chr11:6503021 chr11:6503023 stopgain 1.000 1 23 hm5C_associated_SNPs_60279 0 0 1 0 2 TIMM10B chr11:6503082 5'GT 6503082 Upstream 60bp
chr1 168274382 168274382 1 + C T SKCM 168274380 + 168274360 168274400 41 ACTATTCGGGTCTCCGAGGACACCGGCAGGCTCCCTACCCT ACTATTCGGGTCTCCGAGGACATCGGCAGGCTCCCTACCCT < 41bp 0.779400883928676 0.511044803881656 0.43145725 0.7655889 prediction 0.536712160094041 Functional Loss - TBX19 ENSG00000143178 CDS Human protein_coding chr1:168274380 chr1:168274382 synonymous SNV . 0 23 hm5C_associated_SNPs_60280 0 0 1 0 1 TBX19 chr1:168274434 5'GT 168274434 Upstream 53bp
chr11 86048553 86048553 1 + C T BLCA 86048551 + 86048531 86048571 41 GTAGGTAATGCTGCTGTATCCTCAGTTGACTCATTCACTCA GTAGGTAATGCTGCTGTATCCTTAGTTGACTCATTCACTCA < 41bp 0.768355415812165 0.496881336104035 0.19723529 0.14253724 prediction 0.536710831624331 Functional Loss - HIKESHI ENSG00000149196 CDS Human protein_coding chr11:86048551 chr11:86048553 nonsynonymous SNV 0.959 2 23 hm5C_associated_SNPs_60281 0 0 1 0 1 HIKESHI chr11:86048572 5'GT 86048572 Upstream 20bp
chr10 70998834 70998834 1 + C T COAD 70998832 + 70998812 70998852 41 GTGGACAAAAAAGTTTAAGGCACGAGGAGTTCAGGACACGG GTGGACAAAAAAGTTTAAGGCATGAGGAGTTCAGGACACGG < 41bp 0.768346877511845 0.499522053495088 0.1118401 0.13538897 prediction 0.53669375502369 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:70998832 chr10:70998834 stopgain 0.557 1 23 hm5C_associated_SNPs_60284 0 0 0 0 1 HKDC1 chr10:70998893 5'GT 70998893 Upstream 60bp
chr2 97007481 97007481 1 + A C STAD 97007477 + 97007457 97007497 41 GTGTTCCCGATGCCCCTGCCCAGGAAGGCGCCTCTCAATAT GTGTTCCCGATGCCCCTGCCCAGGCAGGCGCCTCTCAATAT < 41bp 0.911007452304711 0.642665537519999 0.8909795 0.790182 prediction 0.536683829569423 Functional Loss - NCAPH ENSG00000121152 CDS Human protein_coding chr2:97007477 chr2:97007481 nonsynonymous SNV 0.670 0 25 hm5C_associated_SNPs_60285 0 0 1 0 2 NCAPH chr2:97007413 3'AG 97007413 Downstream 69bp
chr2 97007481 97007481 1 + A C STAD 97007477 + 97007457 97007497 41 GTGTTCCCGATGCCCCTGCCCAGGAAGGCGCCTCTCAATAT GTGTTCCCGATGCCCCTGCCCAGGCAGGCGCCTCTCAATAT < 41bp 0.911007452304711 0.642665537519999 0.8909795 0.790182 prediction 0.536683829569423 Functional Loss - NCAPH ENSG00000121152 CDS Human protein_coding chr2:97007477 chr2:97007481 nonsynonymous SNV 0.670 0 25 hm5C_associated_SNPs_60285 0 0 1 0 2 NCAPH chr2:97007452 3'AG 97007452 Downstream 30bp
chr2 95539278 95539278 1 - T A HNSC 95539282 - 95539262 95539302 41 TTCAGCAGCTCCTGAATGTTCCGGATGAGCTCGGCTTCCTG TTCAGCAGCTCCTGAATGTTCCGGTTGAGCTCGGCTTCCTG < 41bp 0.825653969675626 0.557313833910023 0.8600713 0.4103366 prediction 0.536680271531206 Functional Loss - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95539282 chr2:95539278 nonsynonymous SNV 0.303 4 25 hm5C_associated_SNPs_60286 0 0 1 0 2 TEKT4 chr2:95539294 3'AG 95539294 Downstream 17bp
chr2 95539278 95539278 1 - T A HNSC 95539282 - 95539262 95539302 41 TTCAGCAGCTCCTGAATGTTCCGGATGAGCTCGGCTTCCTG TTCAGCAGCTCCTGAATGTTCCGGTTGAGCTCGGCTTCCTG < 41bp 0.825653969675626 0.557313833910023 0.8600713 0.4103366 prediction 0.536680271531206 Functional Loss - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95539282 chr2:95539278 nonsynonymous SNV 0.303 4 25 hm5C_associated_SNPs_60286 0 0 1 0 2 TEKT4 chr2:95539297 3'AG 95539297 Downstream 20bp
chr2 233409166 233409166 1 + G T UCEC 233409164 + 233409144 233409184 41 AGGACACCCAGTCCCGGCTACAGAATGGCTCCTCGGGATGG AGGACACCCAGTCCCGGCTACATAATGGCTCCTCGGGATGG < 41bp 0.768337350785919 0.414076713341556 0.5890879 0.25397402 prediction 0.536674701571839 Functional Loss - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233409164 chr2:233409166 nonsynonymous SNV 0.912 2 23 hm5C_associated_SNPs_60287 0 0 0 0 1 CHRNG chr2:233409077 3'AG 233409077 Downstream 90bp
chr20 25205950 25205950 1 + G T HNSC 25205948 + 25205928 25205968 41 GCTTTCCCAGGAGCAAAGTGCTGAAGGTAAGGGTGCCCTCA GCTTTCCCAGGAGCAAAGTGCTTAAGGTAAGGGTGCCCTCA < 41bp 0.768313774032848 0.464435727484782 0.25404608 0.1288307 prediction 0.536627548065697 Functional Loss - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25205948 chr20:25205950 stopgain 0.855 0 23 hm5C_associated_SNPs_60290 0 0 1 0 1 ENTPD6 chr20:25205953 5'GT 25205953 Upstream 4bp
chr12 6640140 6640140 1 + C T UCEC 6640138 + 6640118 6640158 41 CTCAGACAATGACTTTGTCACACCAGAGCCCCGCCGTACTA CTCAGACAATGACTTTGTCACATCAGAGCCCCGCCGTACTA < 41bp 0.785829450312945 0.517520994617218 0.24239352 0.22135574 prediction 0.536616911391454 Functional Loss - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6640138 chr12:6640140 nonsynonymous SNV 0.322 2 23 hm5C_associated_SNPs_60291 0 0 1 0 1 NCAPD2 chr12:6640087 3'AG 6640087 Downstream 54bp
chr2 178990865 178990865 1 + C T LUAD 178990863 + 178990843 178990883 41 TAAAGTTATGCTGGCAGATTCGCCAAGAGAAGAATCTAACA TAAAGTTATGCTGGCAGATTCGTCAAGAGAAGAATCTAACA < 41bp 0.796951118337257 0.52865083121274 0.5427232 0.077326834 prediction 0.536600574249034 Functional Loss - RBM45 ENSG00000155636 CDS Human protein_coding chr2:178990863 chr2:178990865 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_60294 0 0 1 0 1 RBM45 chr2:178990911 5'GT 178990911 Upstream 47bp
chr3 52818467 52818467 1 + G C OV 52818463 + 52818443 52818483 41 GGACGGGCCCAGAGAATCTACGAGGACCATGATGCCACCCA GGACGGGCCCAGAGAATCTACGAGCACCATGATGCCACCCA < 41bp 0.822546155621288 0.554251984326408 0.88271624 0.39537263 prediction 0.536588342589758 Functional Loss - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52818463 chr3:52818467 nonsynonymous SNV 0.540 3 25 hm5C_associated_SNPs_60295 0 0 0 0 1 ITIH1 chr3:52818493 5'GT 52818493 Upstream 27bp
chr10 43609994 43609994 1 + C T UCEC 43609992 + 43609972 43610012 41 GTCCTCTTCTCCTTCATCGTCTCGGTGCTGCTGTCTGCCTT GTCCTCTTCTCCTTCATCGTCTTGGTGCTGCTGTCTGCCTT < 41bp 0.768279677935971 0.493104118859858 0.12376264 0.19631547 prediction 0.536559355871941 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43609992 chr10:43609994 nonsynonymous SNV 0.897 4 23 hm5C_associated_SNPs_60297 6 0 0 0 1 RET chr10:43609928 3'AG 43609928 Downstream 67bp
chr19 2810340 2810340 1 + G T LUSC 2810338 + 2810318 2810358 41 TCAGCGGGACCCACGTGGAGCGGGACTTTGTGGAGGCGCCG TCAGCGGGACCCACGTGGAGCGTGACTTTGTGGAGGCGCCG < 41bp 0.87480281944976 0.606527310749154 0.6119958 0.059560865 prediction 0.536551017401211 Functional Loss - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2810338 chr19:2810340 synonymous SNV . 0 23 hm5C_associated_SNPs_60298 0 0 1 0 1 THOP1 chr19:2810302 3'AG 2810302 Downstream 39bp
chr4 4411407 4411407 1 + C T SKCM 4411405 + 4411385 4411425 41 CCTGCCCCGATGGGTTCGTCCTCAAGGTAAAACTCCGTTTT CCTGCCCCGATGGGTTCGTCCTTAAGGTAAAACTCCGTTTT < 41bp 0.793939694734565 0.525666278704939 0.06423795 0.052324653 prediction 0.536546832059253 Functional Loss - NSG1 ENSG00000168824 CDS Human protein_coding chr4:4411405 chr4:4411407 synonymous SNV . 0 23 hm5C_associated_SNPs_60299 0 0 0 0 1 NSG1 chr4:4411410 5'GT 4411410 Upstream 4bp
chr19 44622397 44622397 1 + G T LUSC 44622395 + 44622375 44622415 41 TCACTGAGGAAGAGCTGAGGCTGCTGGACCTTGCCCAGAGG TCACTGAGGAAGAGCTGAGGCTTCTGGACCTTGCCCAGAGG < 41bp 0.768267233703223 0.439706393535988 0.107388705 0.07107338 prediction 0.536534467406447 Functional Loss - ZNF225 ENSG00000256294 CDS Human protein_coding chr19:44622395 chr19:44622397 synonymous SNV . 0 23 hm5C_associated_SNPs_60300 0 0 1 0 2 ZNF225 chr19:44622341 3'AG 44622341 Downstream 57bp
chr19 44622397 44622397 1 + G T LUSC 44622395 + 44622375 44622415 41 TCACTGAGGAAGAGCTGAGGCTGCTGGACCTTGCCCAGAGG TCACTGAGGAAGAGCTGAGGCTTCTGGACCTTGCCCAGAGG < 41bp 0.768267233703223 0.439706393535988 0.107388705 0.07107338 prediction 0.536534467406447 Functional Loss - ZNF225 ENSG00000256294 CDS Human protein_coding chr19:44622395 chr19:44622397 synonymous SNV . 0 23 hm5C_associated_SNPs_60300 0 0 1 0 2 ZNF225 chr19:44622467 5'GT 44622467 Upstream 71bp
chr19 7570314 7570314 1 + G T SARC 7570312 + 7570292 7570332 41 AAGGCCGAGCACTTCTATGCCAGGGAGCCAGGTGAGAGCCT AAGGCCGAGCACTTCTATGCCATGGAGCCAGGTGAGAGCCT < 41bp 0.877576398800144 0.609311271626226 0.80259997 0.114171475 prediction 0.536530254347835 Functional Loss - TEX45 ENSG00000198723 CDS Human protein_coding chr19:7570312 chr19:7570314 nonsynonymous SNV 0.034 2 23 hm5C_associated_SNPs_60301 0 0 0 0 1 TEX45 chr19:7570322 5'GT 7570322 Upstream 9bp
chr9 990075 990075 1 + G C LUSC 990074 + 990054 990094 41 ACGACTTGGAGACGGCAAGTCGGCAGACAATACAGAGGTCT ACGACTTGGAGACGGCAAGTCCGCAGACAATACAGAGGTCT < 41bp 0.835747453285697 0.56749874683418 0.46387228 0.20743424 prediction 0.536497412903033 Functional Loss - DMRT3 ENSG00000064218 CDS Human protein_coding chr9:990074 chr9:990075 synonymous SNV . 0 22 hm5C_associated_SNPs_60304 0 0 0 0 1 DMRT3 chr9:990041 3'AG 990041 Downstream 35bp
chr2 10126358 10126358 1 + G T UCEC 10126356 + 10126336 10126376 41 ACCTATAGTTACAACAACCGCAGCAACAAGCCTGTGCACCG ACCTATAGTTACAACAACCGCATCAACAAGCCTGTGCACCG < 41bp 0.768248456202743 0.432986921568147 0.32884878 0.12544423 prediction 0.536496912405485 Functional Loss - GRHL1 ENSG00000134317 CDS Human protein_coding chr2:10126356 chr2:10126358 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_60305 0 0 1 0 1 GRHL1 chr2:10126410 5'GT 10126410 Upstream 53bp
chr1 53073986 53073986 1 + A T LUSC 53073982 + 53073962 53074002 41 CTTCTGGAAGTACCTAGTAGCCCCAGATGGAAAGGTGGTAG CTTCTGGAAGTACCTAGTAGCCCCTGATGGAAAGGTGGTAG < 41bp 0.768243503505351 0.448216187079146 0.55380696 0.13592684 prediction 0.536487007010702 Functional Loss - GPX7 ENSG00000116157 CDS Human protein_coding chr1:53073982 chr1:53073986 synonymous SNV . 0 25 hm5C_associated_SNPs_60307 0 0 0 0 1 GPX7 chr1:53073934 3'AG 53073934 Downstream 53bp
chr12 110350842 110350842 1 + C T ESCA 110350840 + 110350820 110350860 41 AAAGAGAGAGGCAGAGTGGGCCCGAGAGCGCAGCGCACGGG AAAGAGAGAGGCAGAGTGGGCCTGAGAGCGCAGCGCACGGG < 41bp 0.77317892620082 0.504935799969274 0.15444821 0.107117355 prediction 0.536486252463093 Functional Loss - TCHP ENSG00000139437 CDS Human protein_coding chr12:110350840 chr12:110350842 stopgain 0.945 0 23 hm5C_associated_SNPs_60308 0 0 1 0 2 TCHP chr12:110350796 3'AG 110350796 Downstream 47bp
chr12 110350842 110350842 1 + C T ESCA 110350840 + 110350820 110350860 41 AAAGAGAGAGGCAGAGTGGGCCCGAGAGCGCAGCGCACGGG AAAGAGAGAGGCAGAGTGGGCCTGAGAGCGCAGCGCACGGG < 41bp 0.77317892620082 0.504935799969274 0.15444821 0.107117355 prediction 0.536486252463093 Functional Loss - TCHP ENSG00000139437 CDS Human protein_coding chr12:110350840 chr12:110350842 stopgain 0.945 0 23 hm5C_associated_SNPs_60308 0 0 1 0 2 TCHP chr12:110350877 5'GT 110350877 Upstream 36bp
chrX 69639541 69639541 1 + G T UCEC 69639538 + 69639518 69639558 41 TGGGCACTGTTGAACGGACCCAGGATTCCGAAGGCTCCTTC TGGGCACTGTTGAACGGACCCAGTATTCCGAAGGCTCCTTC < 41bp 0.902588318742671 0.634345922963141 0.92328584 0.9249024 prediction 0.536484791559061 Functional Loss - KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639538 chrX:69639541 nonsynonymous SNV 0.981 2 24 hm5C_associated_SNPs_60309 0 0 1 0 2 KIF4A chrX:69639511 3'AG 69639511 Downstream 31bp
chrX 69639541 69639541 1 + G T UCEC 69639538 + 69639518 69639558 41 TGGGCACTGTTGAACGGACCCAGGATTCCGAAGGCTCCTTC TGGGCACTGTTGAACGGACCCAGTATTCCGAAGGCTCCTTC < 41bp 0.902588318742671 0.634345922963141 0.92328584 0.9249024 prediction 0.536484791559061 Functional Loss - KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639538 chrX:69639541 nonsynonymous SNV 0.981 2 24 hm5C_associated_SNPs_60309 0 0 1 0 2 KIF4A chrX:69639633 5'GT 69639633 Upstream 93bp
chr10 124050648 124050648 1 + G C rs149699378 124050644 + 124050624 124050664 41 ATGAGTGAGGTGGAGATTAACTTGGAAGACCTACTGGGAGT ATGAGTGAGGTGGAGATTAACTTGCAAGACCTACTGGGAGT < 41bp 0.816387971589758 0.548148393806796 0.2686135 0.118318975 prediction 0.536479155565925 Functional Loss - BTBD16 ENSG00000138152 CDS Human protein_coding chr10:124050644 chr10:124050648 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_60311 0 0 0 0 2 BTBD16 chr10:124050595 3'AG 124050595 Downstream 54bp
chr10 124050648 124050648 1 + G C rs149699378 124050644 + 124050624 124050664 41 ATGAGTGAGGTGGAGATTAACTTGGAAGACCTACTGGGAGT ATGAGTGAGGTGGAGATTAACTTGCAAGACCTACTGGGAGT < 41bp 0.816387971589758 0.548148393806796 0.2686135 0.118318975 prediction 0.536479155565925 Functional Loss - BTBD16 ENSG00000138152 CDS Human protein_coding chr10:124050644 chr10:124050648 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_60311 0 0 0 0 2 BTBD16 chr10:124050709 5'GT 124050709 Upstream 62bp
chr2 202141634 202141634 1 + G T BRCA 202141631 + 202141611 202141651 41 ATCACAATTTTGCAAAAGCACGGGAGAAAGTGCCCAAACTT ATCACAATTTTGCAAAAGCACGGTAGAAAGTGCCCAAACTT < 41bp 0.854570298173907 0.586331020369358 0.8741473 0.18086159 prediction 0.536478555609098 Functional Loss - CASP8 ENSG00000064012 CDS Human protein_coding chr2:202141631 chr2:202141634 stopgain 0.001 0 24 hm5C_associated_SNPs_60312 0 0 1 0 1 CASP8 chr2:202141550 3'AG 202141550 Downstream 85bp
chrX 208264 208264 1 + C T LUAD 208262 + 208242 208282 41 AGGGGCTGAGCGAGGACCTGCACGAGTACCTGGTCGCCTGT AGGGGCTGAGCGAGGACCTGCATGAGTACCTGGTCGCCTGT < 41bp 0.784953090158934 0.516717349686245 0.8625503 0.5318031 prediction 0.536471480945377 Functional Loss - PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:208262 chrX:208264 synonymous SNV . 0 23 hm5C_associated_SNPs_60313 0 0 1 0 2 PLCXD1 chrX:208166 3'AG 208166 Downstream 99bp
chrX 208264 208264 1 + C T LUAD 208262 + 208242 208282 41 AGGGGCTGAGCGAGGACCTGCACGAGTACCTGGTCGCCTGT AGGGGCTGAGCGAGGACCTGCATGAGTACCTGGTCGCCTGT < 41bp 0.784953090158934 0.516717349686245 0.8625503 0.5318031 prediction 0.536471480945377 Functional Loss - PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:208262 chrX:208264 synonymous SNV . 0 23 hm5C_associated_SNPs_60313 0 0 1 0 2 PLCXD1 chrX:208321 5'GT 208321 Upstream 58bp
chr20 2844651 2844651 1 + G T UCS 2844649 + 2844629 2844669 41 CTCGAGCCATTAACCAGAAGCTGGGGGACACGCCTGGTGTC CTCGAGCCATTAACCAGAAGCTTGGGGACACGCCTGGTGTC < 41bp 0.873532134574366 0.60530215764012 0.8449895 0.27600452 prediction 0.536459953868492 Functional Loss - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2844649 chr20:2844651 synonymous SNV . 0 23 hm5C_associated_SNPs_60314 0 0 0 0 2 VPS16 chr20:2844595 3'AG 2844595 Downstream 57bp
chr20 2844651 2844651 1 + G T UCS 2844649 + 2844629 2844669 41 CTCGAGCCATTAACCAGAAGCTGGGGGACACGCCTGGTGTC CTCGAGCCATTAACCAGAAGCTTGGGGACACGCCTGGTGTC < 41bp 0.873532134574366 0.60530215764012 0.8449895 0.27600452 prediction 0.536459953868492 Functional Loss - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2844649 chr20:2844651 synonymous SNV . 0 23 hm5C_associated_SNPs_60314 0 0 0 0 2 VPS16 chr20:2844729 5'GT 2844729 Upstream 79bp
chr1 210267704 210267704 1 + G T UCEC 210267702 + 210267682 210267722 41 GAATGAGAAGAACACCCCCGCTGGATGAATTGCAGCCACCA GAATGAGAAGAACACCCCCGCTTGATGAATTGCAGCCACCA < 41bp 0.768220932604445 0.456790940465013 0.847502 0.08358419 prediction 0.53644186520889 Functional Loss - SYT14 ENSG00000143469 CDS Human protein_coding chr1:210267702 chr1:210267704 synonymous SNV . 0 23 hm5C_associated_SNPs_60315 0 0 0 0 1 SYT14 chr1:210267667 3'AG 210267667 Downstream 38bp
chr11 82874804 82874804 1 + G T SARC 82874802 + 82874782 82874822 41 CTTTGAAGAAACTTTATGCCCTGGATGTCAGAGTCAATTCA CTTTGAAGAAACTTTATGCCCTTGATGTCAGAGTCAATTCA < 41bp 0.848450509618856 0.580229750887372 0.013187826 0.008996308 prediction 0.536441517462968 Functional Loss - PCF11 ENSG00000165494 CDS Human protein_coding chr11:82874802 chr11:82874804 synonymous SNV . 0 23 hm5C_associated_SNPs_60316 0 0 1 0 1 PCF11 chr11:82874721 3'AG 82874721 Downstream 84bp
chr5 140027504 140027504 1 + G C SKCM 140027503 + 140027483 140027523 41 ACGATAACAAAATGCCGGAGCGAGATAGTAAGGCTCAGGCC ACGATAACAAAATGCCGGAGCCAGATAGTAAGGCTCAGGCC < 41bp 0.81904156771462 0.550825472297632 0.54498 0.3635103 prediction 0.536432190833977 Functional Loss - IK ENSG00000113141 CDS Human protein_coding chr5:140027503 chr5:140027504 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_60317 0 0 1 0 1 IK chr5:140027509 5'GT 140027509 Upstream 6bp
chr5 122154644 122154644 1 + G T UCEC 122154641 + 122154621 122154661 41 AGAAGATAGACCAGTTACATCAAGAACAAGCTTTTGCTGAC AGAAGATAGACCAGTTACATCAATAACAAGCTTTTGCTGAC < 41bp 0.768215913353687 0.399654694394479 0.24273583 0.07146934 prediction 0.536431826707374 Functional Loss - SNX2 ENSG00000205302 CDS Human protein_coding chr5:122154641 chr5:122154644 stopgain 1.000 1 24 hm5C_associated_SNPs_60318 0 0 1 0 1 SNX2 chr5:122154718 5'GT 122154718 Upstream 75bp
chr3 52823866 52823866 1 + G T UCEC 52823863 + 52823843 52823883 41 GGGACCAAGCTGTGCTGCGGCAGGACGGGTAACCTGCCAGG GGGACCAAGCTGTGCTGCGGCAGTACGGGTAACCTGCCAGG < 41bp 0.901374520388114 0.633169920073805 0.7821345 0.4197101 prediction 0.536409200628617 Functional Loss - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52823863 chr3:52823866 nonsynonymous SNV 0.629 1 24 hm5C_associated_SNPs_60321 0 0 1 0 1 ITIH1 chr3:52823870 5'GT 52823870 Upstream 5bp
chr16 58296315 58296315 1 + C T BLCA 58296313 + 58296293 58296333 41 AAGAGGTGAGTGAGGCCCTTCACGATGTTGATTTTCAGCAG AAGAGGTGAGTGAGGCCCTTCATGATGTTGATTTTCAGCAG < 41bp 0.804126213609432 0.535929715426438 0.4566411 0.48174894 prediction 0.536392996365986 Functional Loss - CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58296313 chr16:58296315 synonymous SNV . 0 23 hm5C_associated_SNPs_60323 0 0 1 0 1 CCDC113 chr16:58296289 3'AG 58296289 Downstream 27bp
chr9 82333723 82333723 1 + G C LAML 82333722 + 82333702 82333742 41 TCATCGGACCTGGAATCCCCCGGCATGCTCGCCAGATCAAC TCATCGGACCTGGAATCCCCCCGCATGCTCGCCAGATCAAC < 41bp 0.844120088451927 0.575944159581109 0.2445836 0.02494514 prediction 0.536351857741636 Functional Loss - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82333722 chr9:82333723 nonsynonymous SNV 0.529 4 22 hm5C_associated_SNPs_60326 0 0 1 0 1 TLE4 chr9:82333637 3'AG 82333637 Downstream 87bp
chr6 350830 350830 1 + G T LUSC 350828 + 350808 350848 41 TTCTTTCTTCACAGCCGCTCCGGGAATTCTGAAGTTCTGGG TTCTTTCTTCACAGCCGCTCCGTGAATTCTGAAGTTCTGGG < 41bp 0.778238295478477 0.510066204295147 0.2996706 0.070343554 prediction 0.536344182366659 Functional Loss - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:350828 chr6:350830 stopgain 0.593 0 23 hm5C_associated_SNPs_60327 0 0 1 0 1 DUSP22 chr6:350822 3'AG 350822 Downstream 9bp
chr20 60348088 60348088 1 + G T LIHC 60348086 + 60348066 60348106 41 AAGGAAAGAAGGTCGTGGCTCTGGACCCCTCTCCGCCTCCG AAGGAAAGAAGGTCGTGGCTCTTGACCCCTCTCCGCCTCCG < 41bp 0.768162057781263 0.454088252759669 0.46478522 0.12203276 prediction 0.536324115562526 Functional Loss - CDH4 ENSG00000179242 CDS Human protein_coding chr20:60348086 chr20:60348088 synonymous SNV . 0 23 hm5C_associated_SNPs_60331 0 0 0 0 1 CDH4 chr20:60348059 3'AG 60348059 Downstream 30bp
chr4 15826559 15826559 1 + G C LUSC 15826558 + 15826538 15826578 41 ATCAGTTCACACAGGTCCAGCGGGACATGTTCACCCTGGAG ATCAGTTCACACAGGTCCAGCCGGACATGTTCACCCTGGAG < 41bp 0.827777071071161 0.559619311803801 0.63367695 0.120560795 prediction 0.53631551853472 Functional Loss - CD38 ENSG00000004468 CDS Human protein_coding chr4:15826558 chr4:15826559 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_60333 0 0 0 0 2 CD38 chr4:15826504 3'AG 15826504 Downstream 56bp
chr4 15826559 15826559 1 + G C LUSC 15826558 + 15826538 15826578 41 ATCAGTTCACACAGGTCCAGCGGGACATGTTCACCCTGGAG ATCAGTTCACACAGGTCCAGCCGGACATGTTCACCCTGGAG < 41bp 0.827777071071161 0.559619311803801 0.63367695 0.120560795 prediction 0.53631551853472 Functional Loss - CD38 ENSG00000004468 CDS Human protein_coding chr4:15826558 chr4:15826559 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_60333 0 0 0 0 2 CD38 chr4:15826639 5'GT 15826639 Upstream 81bp
chr1 44596402 44596402 1 + G T KIRC 44596399 + 44596379 44596419 41 CCAACAACAACAATGGAGAGCAGGACAGTCCTCCTGCTGCT CCAACAACAACAATGGAGAGCAGTACAGTCCTCCTGCTGCT < 41bp 0.768152982823793 0.38410195145361 0.8445691 0.31635442 prediction 0.536305965647585 Functional Loss - KLF17 ENSG00000171872 CDS Human protein_coding chr1:44596399 chr1:44596402 nonsynonymous SNV 0.012 2 24 hm5C_associated_SNPs_60336 0 0 0 0 1 KLF17 chr1:44596428 5'GT 44596428 Upstream 27bp
chr17 7460486 7460486 1 + G C PRAD 7460482 + 7460462 7460502 41 TGGTGGATGGTGTGCTGGCCCTGCGCTGCCTGGAGGAATTC TGGTGGATGGTGTGCTGGCCCTGCCCTGCCTGGAGGAATTC < 41bp 0.76813633730675 0.496779928358296 0.07914966 0.07214373 prediction 0.5362726746135 Functional Loss - TNFSF12 ENSG00000239697 CDS Human protein_coding chr17:7460482 chr17:7460486 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_60339 0 0 0 0 1 TNFSF12 chr17:7460416 3'AG 7460416 Downstream 71bp
chr1 111889655 111889655 1 + G T STAD 111889652 + 111889632 111889672 41 GGGATCACCCCACAGAGGGCCTGGGTGTTATTTTTCAGATG GGGATCACCCCACAGAGGGCCTGTGTGTTATTTTTCAGATG < 41bp 0.768132256614725 0.384753015474883 0.18616396 0.021538377 prediction 0.536264513229449 Functional Loss - PIFO ENSG00000173947 CDS Human protein_coding chr1:111889652 chr1:111889655 nonsynonymous SNV 0.956 4 24 hm5C_associated_SNPs_60340 0 0 0 0 1 PIFO chr1:111889671 5'GT 111889671 Upstream 17bp
chr14 31139478 31139478 1 + G T LGG 31139476 + 31139456 31139496 41 TCCTAGGATTTCCATTTAAACAGGGTTAATTTGGAAGAATC TCCTAGGATTTCCATTTAAACATGGTTAATTTGGAAGAATC < 41bp 0.768112713790868 0.465538585788853 0.9214386 0.84664834 prediction 0.536225427581737 Functional Loss - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31139476 chr14:31139478 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_60347 0 0 1 0 1 SCFD1 chr14:31139462 3'AG 31139462 Downstream 17bp
chrX 67941446 67941446 1 + G T CESC 67941443 + 67941423 67941463 41 TGCTGCTCCCCGATGAGAACCGAGAGGTGCTACAGACCCTG TGCTGCTCCCCGATGAGAACCGATAGGTGCTACAGACCCTG < 41bp 0.768108633045684 0.369279419878872 0.8359455 0.11013457 prediction 0.536217266091367 Functional Loss - STARD8 ENSG00000130052 CDS Human protein_coding chrX:67941443 chrX:67941446 stopgain 1.000 1 24 hm5C_associated_SNPs_60348 0 0 1 0 1 STARD8 chrX:67941378 3'AG 67941378 Downstream 69bp
chrX 67941447 67941447 1 + A T OV 67941443 + 67941423 67941463 41 TGCTGCTCCCCGATGAGAACCGAGAGGTGCTACAGACCCTG TGCTGCTCCCCGATGAGAACCGAGTGGTGCTACAGACCCTG < 41bp 0.768108633045684 0.446262514167957 0.8359455 0.30327892 prediction 0.536217266091367 Functional Loss - STARD8 ENSG00000130052 CDS Human protein_coding chrX:67941443 chrX:67941447 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_60349 0 0 1 0 1 STARD8 chrX:67941378 3'AG 67941378 Downstream 70bp
chr11 44626732 44626732 1 + G T LUAD 44626730 + 44626710 44626750 41 AGGTCCGCTGCCTGCTGGGGCTGGTGAGTACGGATCCCTCC AGGTCCGCTGCCTGCTGGGGCTTGTGAGTACGGATCCCTCC < 41bp 0.768095580726626 0.416570215271596 0.36889255 0.121673256 prediction 0.536191161453252 Functional Loss - CD82 ENSG00000085117 CDS Human protein_coding chr11:44626730 chr11:44626732 synonymous SNV . 0 23 hm5C_associated_SNPs_60351 0 0 1 0 1 CD82 chr11:44626732 5'GT 44626732 Upstream 1bp
chr12 117271710 117271710 1 + G T COAD 117271708 + 117271688 117271728 41 ACTCCTCCAACAGCTACTTCCTGGGCGGGGTCCTGATCGTT ACTCCTCCAACAGCTACTTCCTTGGCGGGGTCCTGATCGTT < 41bp 0.768093132226196 0.425757652291387 0.16852635 0.012019515 prediction 0.536186264452392 Functional Loss - RNFT2 ENSG00000135119 CDS Human protein_coding chr12:117271708 chr12:117271710 synonymous SNV . 0 23 hm5C_associated_SNPs_60352 0 0 0 0 1 RNFT2 chr12:117271746 5'GT 117271746 Upstream 37bp
chr8 11640782 11640782 1 + C T SKCM 11640780 + 11640760 11640800 41 TCAGTTGTCTTGGAGCTCTTCCCCAGTGGTCACACCCACCT TCAGTTGTCTTGGAGCTCTTCCTCAGTGGTCACACCCACCT < 41bp 0.768082321944624 0.482319848920022 0.18093553 0.098998934 prediction 0.536164643889247 Functional Loss - NEIL2 ENSG00000154328 CDS Human protein_coding chr8:11640780 chr8:11640782 nonsynonymous SNV 0.068 1 23 hm5C_associated_SNPs_60355 0 0 1 0 1 NEIL2 chr8:11640712 3'AG 11640712 Downstream 71bp
chr5 53815321 53815321 1 + G T UCEC 53815319 + 53815299 53815339 41 TCTTCGCGGAGCAGCCCAGGCAGGACCTGGATCCCGTCATG TCTTCGCGGAGCAGCCCAGGCATGACCTGGATCCCGTCATG < 41bp 0.86902008031591 0.600940239176622 0.91254187 0.37407407 prediction 0.536159682278577 Functional Loss - SNX18 ENSG00000178996 CDS Human protein_coding chr5:53815319 chr5:53815321 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_60357 0 0 1 0 1 SNX18 chr5:53815403 5'GT 53815403 Upstream 83bp
chr4 25674816 25674816 1 + A T STAD 25674812 + 25674792 25674832 41 GGTTGCCTGATCATGATTGTCAAGATCCTGGGCTCTGTGCT GGTTGCCTGATCATGATTGTCAAGTTCCTGGGCTCTGTGCT < 41bp 0.847794881773162 0.579720934099204 0.50764036 0.72979754 prediction 0.536147895347917 Functional Loss - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25674812 chr4:25674816 nonsynonymous SNV 0.405 2 25 hm5C_associated_SNPs_60358 0 0 0 0 1 SLC34A2 chr4:25674876 5'GT 25674876 Upstream 61bp
chrX 150840747 150840747 1 + G T UCEC 150840745 + 150840725 150840765 41 TGAGAGAGCAAAGGAAGGTGCAGAAGCAGAAGAAGATGCAG TGAGAGAGCAAAGGAAGGTGCATAAGCAGAAGAAGATGCAG < 41bp 0.768065872227019 0.419730847189279 0.5040489 0.23375446 prediction 0.536131744454039 Functional Loss - PASD1 ENSG00000166049 CDS Human protein_coding chrX:150840745 chrX:150840747 nonsynonymous SNV 0.003 3 23 hm5C_associated_SNPs_60359 0 0 0 0 1 PASD1 chrX:150840655 3'AG 150840655 Downstream 93bp
chr17 45299788 45299788 1 + G T LUAD 45299785 + 45299765 45299805 41 TGAAGTGGAGCAGCTGTTAGCTGGGCAAGAGGATGCCAATG TGAAGTGGAGCAGCTGTTAGCTGTGCAAGAGGATGCCAATG < 41bp 0.909337234254246 0.641276644978299 0.8859254 0.24430153 prediction 0.536121178551893 Functional Loss - MYL4 ENSG00000198336 CDS Human protein_coding chr17:45299785 chr17:45299788 nonsynonymous SNV 0.941 4 24 hm5C_associated_SNPs_60361 0 0 1 0 2 MYL4 chr17:45299746 3'AG 45299746 Downstream 43bp
chr17 45299788 45299788 1 + G T LUAD 45299785 + 45299765 45299805 41 TGAAGTGGAGCAGCTGTTAGCTGGGCAAGAGGATGCCAATG TGAAGTGGAGCAGCTGTTAGCTGTGCAAGAGGATGCCAATG < 41bp 0.909337234254246 0.641276644978299 0.8859254 0.24430153 prediction 0.536121178551893 Functional Loss - MYL4 ENSG00000198336 CDS Human protein_coding chr17:45299785 chr17:45299788 nonsynonymous SNV 0.941 4 24 hm5C_associated_SNPs_60361 0 0 1 0 2 MYL4 chr17:45299823 5'GT 45299823 Upstream 36bp
chr17 79152853 79152853 1 + G T UCEC 79152850 + 79152830 79152870 41 GGCGAGGACAGCTGCAGCCCCGAGATGTAAACAGGCTTGCA GGCGAGGACAGCTGCAGCCCCGATATGTAAACAGGCTTGCA < 41bp 0.768037809559194 0.406912955903111 0.59333664 0.097194046 prediction 0.536075619118388 Functional Loss - AATK-AS1 ENSG00000225180 ncRNA_exonic Human protein_coding chr17:79152850 chr17:79152853 . . 0 24 hm5C_associated_SNPs_60365 0 0 0 0 1 AATK-AS1 chr17:79152952 5'GT 79152952 Upstream 100bp
chr19 110702 110702 1 + G T LUAD 110700 + 110680 110720 41 TGGTGACTGAATTCATTTTTCTGGGTCTCTCTGATTCTCAG TGGTGACTGAATTCATTTTTCTTGGTCTCTCTGATTCTCAG < 41bp 0.836630462962164 0.568595234535614 0.8914088 0.42066312 prediction 0.5360704568531 Functional Loss - OR4F17 ENSG00000176695 CDS Human protein_coding chr19:110700 chr19:110702 synonymous SNV . 0 23 hm5C_associated_SNPs_60367 0 0 0 0 1 OR4F17 chr19:110625 3'AG 110625 Downstream 78bp
chr6 26408132 26408132 1 + A T ACC 26408128 + 26408108 26408148 41 GGGGAGGGTGTATCCTGTACCATCAGAAGTTCCCTCCTCGG GGGGAGGGTGTATCCTGTACCATCTGAAGTTCCCTCCTCGG < 41bp 0.768034773375672 0.462746876013344 0.118057996 0.27540487 prediction 0.536069546751344 Functional Loss - BTN3A1 ENSG00000026950 CDS Human protein_coding chr6:26408128 chr6:26408132 stopgain 0.013 0 25 hm5C_associated_SNPs_60368 0 0 1 0 2 BTN3A1 chr6:26408055 3'AG 26408055 Downstream 78bp
chr6 26408132 26408132 1 + A T ACC 26408128 + 26408108 26408148 41 GGGGAGGGTGTATCCTGTACCATCAGAAGTTCCCTCCTCGG GGGGAGGGTGTATCCTGTACCATCTGAAGTTCCCTCCTCGG < 41bp 0.768034773375672 0.462746876013344 0.118057996 0.27540487 prediction 0.536069546751344 Functional Loss - BTN3A1 ENSG00000026950 CDS Human protein_coding chr6:26408128 chr6:26408132 stopgain 0.013 0 25 hm5C_associated_SNPs_60368 0 0 1 0 2 BTN3A1 chr6:26408180 5'GT 26408180 Upstream 49bp
chr16 47621611 47621611 1 + C T SKCM 47621609 + 47621589 47621629 41 GGTCAGTTATATTTGTGGATCTCGATGCTCACAATCGCAAC GGTCAGTTATATTTGTGGATCTTGATGCTCACAATCGCAAC < 41bp 0.803105415832156 0.535083383140048 0.53174824 0.18231985 prediction 0.536044065384215 Functional Loss - PHKB ENSG00000102893 CDS Human protein_coding chr16:47621609 chr16:47621611 synonymous SNV . 0 23 hm5C_associated_SNPs_60369 0 0 1 0 2 PHKB chr16:47621579 3'AG 47621579 Downstream 33bp
chr16 47621611 47621611 1 + C T SKCM 47621609 + 47621589 47621629 41 GGTCAGTTATATTTGTGGATCTCGATGCTCACAATCGCAAC GGTCAGTTATATTTGTGGATCTTGATGCTCACAATCGCAAC < 41bp 0.803105415832156 0.535083383140048 0.53174824 0.18231985 prediction 0.536044065384215 Functional Loss - PHKB ENSG00000102893 CDS Human protein_coding chr16:47621609 chr16:47621611 synonymous SNV . 0 23 hm5C_associated_SNPs_60369 0 0 1 0 2 PHKB chr16:47621674 5'GT 47621674 Upstream 64bp
chr17 12488005 12488005 1 + G T UCEC 12488002 + 12487982 12488022 41 ATCAAAGTGGTGGCAAATATCAAGAGTGAATATACTCCACG ATCAAAGTGGTGGCAAATATCAATAGTGAATATACTCCACG < 41bp 0.76801067438517 0.488420659836633 0.93014824 0.267771 prediction 0.536021348770341 Functional Loss - LINC00670 ENSG00000179136 ncRNA_exonic Human lincRNA chr17:12488002 chr17:12488005 . . 0 24 hm5C_associated_SNPs_60372 0 0 0 0 1 LINC00670 chr17:12488038 5'GT 12488038 Upstream 34bp
chr8 80553695 80553695 1 + A T SKCM 80553691 + 80553671 80553711 41 GAAGCCACCATCTCCTATCTCAGAAGCCCCACGAACTTTAG GAAGCCACCATCTCCTATCTCAGATGCCCCACGAACTTTAG < 41bp 0.847754270366363 0.579759201338929 0.9237058 0.91511875 prediction 0.535990138054867 Functional Loss - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80553691 chr8:80553695 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_60375 0 0 0 1 2 STMN2 chr8:80553613 3'AG 80553613 Downstream 83bp
chr8 80553695 80553695 1 + A T SKCM 80553691 + 80553671 80553711 41 GAAGCCACCATCTCCTATCTCAGAAGCCCCACGAACTTTAG GAAGCCACCATCTCCTATCTCAGATGCCCCACGAACTTTAG < 41bp 0.847754270366363 0.579759201338929 0.9237058 0.91511875 prediction 0.535990138054867 Functional Loss - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80553691 chr8:80553695 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_60375 0 0 0 1 2 STMN2 chr8:80553785 5'GT 80553785 Upstream 91bp
chr11 112084477 112084477 1 + C T BLCA 112084475 + 112084455 112084495 41 TTCAGCAGCCAAATCTTTCCCTCGAAGGTTTGTTTTGCCTT TTCAGCAGCCAAATCTTTCCCTTGAAGGTTTGTTTTGCCTT < 41bp 0.817059710593972 0.549069433004092 0.077564746 0.0028708577 prediction 0.53598055517976 Functional Loss - BCO2 ENSG00000197580 CDS Human protein_coding chr11:112084475 chr11:112084477 stopgain 0.990 1 23 hm5C_associated_SNPs_60376 0 0 0 0 1 BCO2 chr11:112084447 3'AG 112084447 Downstream 31bp
chr7 44796084 44796084 1 + A T UCEC 44796080 + 44796060 44796100 41 ACAAAGCGCCACTCAGCCGGCTGGATCGCTGTCTGTGGTCA ACAAAGCGCCACTCAGCCGGCTGGTTCGCTGTCTGTGGTCA < 41bp 0.767981941075635 0.438014481895833 0.17904148 0.07212561 prediction 0.53596388215127 Functional Loss - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44796080 chr7:44796084 synonymous SNV . 0 25 hm5C_associated_SNPs_60377 0 0 1 0 2 ZMIZ2 chr7:44796024 3'AG 44796024 Downstream 61bp
chr7 44796084 44796084 1 + A T UCEC 44796080 + 44796060 44796100 41 ACAAAGCGCCACTCAGCCGGCTGGATCGCTGTCTGTGGTCA ACAAAGCGCCACTCAGCCGGCTGGTTCGCTGTCTGTGGTCA < 41bp 0.767981941075635 0.438014481895833 0.17904148 0.07212561 prediction 0.53596388215127 Functional Loss - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44796080 chr7:44796084 synonymous SNV . 0 25 hm5C_associated_SNPs_60377 0 0 1 0 2 ZMIZ2 chr7:44796138 5'GT 44796138 Upstream 55bp
chrX 151909178 151909178 1 + G T COAD 151909175 + 151909155 151909195 41 AAAAGGGAAAAGGGACCCGTCAAGGAAGTTCCAGGAACAAA AAAAGGGAAAAGGGACCCGTCAATGAAGTTCCAGGAACAAA < 41bp 0.888193518857021 0.62024897063586 0.14585322 0.0254367 prediction 0.535889096442322 Functional Loss - CSAG1 ENSG00000198930 CDS Human protein_coding chrX:151909175 chrX:151909178 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_60379 0 0 0 0 1 CSAG1 chrX:151909139 3'AG 151909139 Downstream 40bp
chr1 65690488 65690488 1 + C T UCEC 65690486 + 65690466 65690506 41 TCCAGCAGGAGGATGATAAACCCGAAGCAGTTGCTGCCAGG TCCAGCAGGAGGATGATAAACCTGAAGCAGTTGCTGCCAGG < 41bp 0.767939783114868 0.48132553242764 0.23585606 0.20245123 prediction 0.535879566229736 Functional Loss - AK4 ENSG00000162433 CDS Human protein_coding chr1:65690486 chr1:65690488 synonymous SNV . 0 23 hm5C_associated_SNPs_60382 0 0 1 0 1 AK4 chr1:65690553 5'GT 65690553 Upstream 66bp
chr2 128180872 128180872 1 + G T rs5936 128180869 + 128180849 128180889 41 GAGGTGAGCTTCCTCAATTGCTCGCTGGACAACGGCGGCTG GAGGTGAGCTTCCTCAATTGCTCTCTGGACAACGGCGGCTG < 41bp 0.767933559796205 0.377188608210657 0.32301736 0.24469233 prediction 0.53586711959241 Functional Loss - PROC ENSG00000115718 CDS Human protein_coding chr2:128180869 chr2:128180872 synonymous SNV . 0 24 hm5C_associated_SNPs_60383 2 0 1 0 1 PROC chr2:128180850 3'AG 128180850 Downstream 23bp
chr22 40803806 40803806 1 + A C KIRP 40803802 + 40803782 40803822 41 CTCCTGTGCAGATCGTGTCTCAGAAGGACGAGCACTGCTGG CTCCTGTGCAGATCGTGTCTCAGACGGACGAGCACTGCTGG < 41bp 0.767927683555244 0.374789473988321 0.90380347 0.85490924 prediction 0.535855367110488 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40803802 chr22:40803806 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_60384 0 0 1 0 2 SGSM3 chr22:40803793 3'AG 40803793 Downstream 14bp
chr22 40803806 40803806 1 + A C KIRP 40803802 + 40803782 40803822 41 CTCCTGTGCAGATCGTGTCTCAGAAGGACGAGCACTGCTGG CTCCTGTGCAGATCGTGTCTCAGACGGACGAGCACTGCTGG < 41bp 0.767927683555244 0.374789473988321 0.90380347 0.85490924 prediction 0.535855367110488 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40803802 chr22:40803806 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_60384 0 0 1 0 2 SGSM3 chr22:40803847 5'GT 40803847 Upstream 42bp
chrX 11316747 11316747 1 + C T GBM 11316745 + 11316725 11316765 41 GTGCTGTCCCAACAGCACCCCCCGACTCACACCCTGCAGCC GTGCTGTCCCAACAGCACCCCCTGACTCACACCCTGCAGCC < 41bp 0.76790821189449 0.499467204519792 0.013151526 0.060307294 prediction 0.53581642378898 Functional Loss - AMELX ENSG00000125363 CDS Human protein_coding chrX:11316745 chrX:11316747 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_60385 0 0 0 0 1 AMELX chrX:11316668 3'AG 11316668 Downstream 80bp
chr8 118184853 118184853 1 + C T STAD 118184851 + 118184831 118184871 41 AGCTTTACGATGCACTCACTCACCATTCAGATGGAATCTCC AGCTTTACGATGCACTCACTCATCATTCAGATGGAATCTCC < 41bp 0.789003911224504 0.52111317037511 0.041871488 0.105250776 prediction 0.535781481698788 Functional Loss - SLC30A8 ENSG00000164756 CDS Human protein_coding chr8:118184851 chr8:118184853 nonsynonymous SNV 0.977 4 23 hm5C_associated_SNPs_60386 0 0 0 0 1 SLC30A8 chr8:118184775 3'AG 118184775 Downstream 79bp
chr20 2840965 2840965 1 + G T BRCA 2840963 + 2840943 2840983 41 TGCAGGAAGATGGTGCTGTACTGGTTTATGGGCTTCATGGT TGCAGGAAGATGGTGCTGTACTTGTTTATGGGCTTCATGGT < 41bp 0.767879497598044 0.433381670114493 0.14232677 0.087656856 prediction 0.535758995196088 Functional Loss - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2840963 chr20:2840965 synonymous SNV . 0 23 hm5C_associated_SNPs_60389 0 0 1 0 2 VPS16 chr20:2840885 3'AG 2840885 Downstream 81bp
chr20 2840965 2840965 1 + G T BRCA 2840963 + 2840943 2840983 41 TGCAGGAAGATGGTGCTGTACTGGTTTATGGGCTTCATGGT TGCAGGAAGATGGTGCTGTACTTGTTTATGGGCTTCATGGT < 41bp 0.767879497598044 0.433381670114493 0.14232677 0.087656856 prediction 0.535758995196088 Functional Loss - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2840963 chr20:2840965 synonymous SNV . 0 23 hm5C_associated_SNPs_60389 0 0 1 0 2 VPS16 chr20:2841013 5'GT 2841013 Upstream 49bp
chr1 221054587 221054587 1 + G T ESCA 221054584 + 221054564 221054604 41 GCCCGCCGGGGTGCACCTCTCAGGCCTGCAGCCCTCGGCCG GCCCGCCGGGGTGCACCTCTCAGTCCTGCAGCCCTCGGCCG < 41bp 0.914396141064583 0.646524580397188 0.931759 0.6760191 prediction 0.535743121334789 Functional Loss - HLX ENSG00000136630 CDS Human protein_coding chr1:221054584 chr1:221054587 nonsynonymous SNV 0.703 1 24 hm5C_associated_SNPs_60390 0 0 0 0 1 HLX chr1:221054536 3'AG 221054536 Downstream 52bp
chr6 44114611 44114611 1 + C T rs142029936 44114609 + 44114589 44114629 41 CCTACCCCAACTGCACAGTTCTCGAAGCCCGCCCGTGTTAC CCTACCCCAACTGCACAGTTCTTGAAGCCCGCCCGTGTTAC < 41bp 0.81241601459487 0.544554624747181 0.94347405 0.36083162 prediction 0.535722779695378 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44114609 chr6:44114611 synonymous SNV . 0 23 hm5C_associated_SNPs_60392 0 0 1 2 2 TMEM63B chr6:44114584 3'AG 44114584 Downstream 28bp
chr6 44114611 44114611 1 + C T rs142029936 44114609 + 44114589 44114629 41 CCTACCCCAACTGCACAGTTCTCGAAGCCCGCCCGTGTTAC CCTACCCCAACTGCACAGTTCTTGAAGCCCGCCCGTGTTAC < 41bp 0.81241601459487 0.544554624747181 0.94347405 0.36083162 prediction 0.535722779695378 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44114609 chr6:44114611 synonymous SNV . 0 23 hm5C_associated_SNPs_60392 0 0 1 2 2 TMEM63B chr6:44114664 5'GT 44114664 Upstream 54bp
chr12 58140029 58140029 1 + G C GBM 58140028 + 58140008 58140048 41 GCTCATGTCTGGCTATTAACCGAAGCAAACAGGTAAGACAG GCTCATGTCTGGCTATTAACCCAAGCAAACAGGTAAGACAG < 41bp 0.767856937528615 0.479955044769022 0.91691047 0.8749393 prediction 0.53571387505723 Functional Loss - TSPAN31 ENSG00000135452 CDS Human protein_coding chr12:58140028 chr12:58140029 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_60393 0 0 1 0 2 TSPAN31 chr12:58139959 3'AG 58139959 Downstream 71bp
chr12 58140029 58140029 1 + G C GBM 58140028 + 58140008 58140048 41 GCTCATGTCTGGCTATTAACCGAAGCAAACAGGTAAGACAG GCTCATGTCTGGCTATTAACCCAAGCAAACAGGTAAGACAG < 41bp 0.767856937528615 0.479955044769022 0.91691047 0.8749393 prediction 0.53571387505723 Functional Loss - TSPAN31 ENSG00000135452 CDS Human protein_coding chr12:58140028 chr12:58140029 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_60393 0 0 1 0 2 TSPAN31 chr12:58140039 5'GT 58140039 Upstream 11bp
chr4 156828925 156828925 1 + A C THCA 156828921 + 156828901 156828941 41 TCTGGGAGTTGGATTCTGTTCGAGAGATCTTTCAGAATGGC TCTGGGAGTTGGATTCTGTTCGAGCGATCTTTCAGAATGGC < 41bp 0.90772985854058 0.639889976071064 0.53977656 0.24139681 prediction 0.535679764939031 Functional Loss - TDO2 ENSG00000151790 CDS Human protein_coding chr4:156828921 chr4:156828925 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_60395 0 0 0 0 2 TDO2 chr4:156828874 3'AG 156828874 Downstream 52bp
chr4 156828925 156828925 1 + A C THCA 156828921 + 156828901 156828941 41 TCTGGGAGTTGGATTCTGTTCGAGAGATCTTTCAGAATGGC TCTGGGAGTTGGATTCTGTTCGAGCGATCTTTCAGAATGGC < 41bp 0.90772985854058 0.639889976071064 0.53977656 0.24139681 prediction 0.535679764939031 Functional Loss - TDO2 ENSG00000151790 CDS Human protein_coding chr4:156828921 chr4:156828925 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_60395 0 0 0 0 2 TDO2 chr4:156828944 5'GT 156828944 Upstream 20bp
chr2 96040934 96040934 1 + G T LUSC 96040932 + 96040912 96040952 41 TTCAACGCCTTTGATGCGGACGGGAACGGGGCCATCCACTT TTCAACGCCTTTGATGCGGACGTGAACGGGGCCATCCACTT < 41bp 0.767837120185668 0.42562922819843 0.5957212 0.25721198 prediction 0.535674240371336 Functional Loss - KCNIP3 ENSG00000115041 CDS Human protein_coding chr2:96040932 chr2:96040934 nonsynonymous SNV 0.919 1 23 hm5C_associated_SNPs_60398 0 0 1 0 2 KCNIP3 chr2:96040886 3'AG 96040886 Downstream 49bp
chr2 96040934 96040934 1 + G T LUSC 96040932 + 96040912 96040952 41 TTCAACGCCTTTGATGCGGACGGGAACGGGGCCATCCACTT TTCAACGCCTTTGATGCGGACGTGAACGGGGCCATCCACTT < 41bp 0.767837120185668 0.42562922819843 0.5957212 0.25721198 prediction 0.535674240371336 Functional Loss - KCNIP3 ENSG00000115041 CDS Human protein_coding chr2:96040932 chr2:96040934 nonsynonymous SNV 0.919 1 23 hm5C_associated_SNPs_60398 0 0 1 0 2 KCNIP3 chr2:96040956 5'GT 96040956 Upstream 23bp
chr6 88117723 88117723 1 + G C rs538728543 88117722 + 88117702 88117742 41 TGGTTACGCGGCGGTGGCTGCGAGCGCCCAACTGCTCCGAC TGGTTACGCGGCGGTGGCTGCCAGCGCCCAACTGCTCCGAC < 41bp 0.803351547514138 0.53552837614432 0.91983306 0.6967988 prediction 0.535646342739637 Functional Loss - CFAP206 ENSG00000272514 UTR5 Human other chr6:88117722 chr6:88117723 . . 0 22 hm5C_associated_SNPs_60400 0 0 0 0 1 CFAP206 chr6:88117807 5'GT 88117807 Upstream 85bp
chrY 6938313 6938313 1 + C T HNSC 6938311 + 6938291 6938331 41 AAGCCACAGTCCTTCGGGGCCACGAGTCTGAGGTGTTCATT AAGCCACAGTCCTTCGGGGCCATGAGTCTGAGGTGTTCATT < 41bp 0.779490375972649 0.511667687261735 0.07755506 0.061390072 prediction 0.535645377421828 Functional Loss - TBL1Y ENSG00000092377 CDS Human protein_coding chrY:6938311 chrY:6938313 synonymous SNV . 0 23 hm5C_associated_SNPs_60401 0 0 0 0 2 TBL1Y chrY:6938237 3'AG 6938237 Downstream 77bp
chrY 6938313 6938313 1 + C T HNSC 6938311 + 6938291 6938331 41 AAGCCACAGTCCTTCGGGGCCACGAGTCTGAGGTGTTCATT AAGCCACAGTCCTTCGGGGCCATGAGTCTGAGGTGTTCATT < 41bp 0.779490375972649 0.511667687261735 0.07755506 0.061390072 prediction 0.535645377421828 Functional Loss - TBL1Y ENSG00000092377 CDS Human protein_coding chrY:6938311 chrY:6938313 synonymous SNV . 0 23 hm5C_associated_SNPs_60401 0 0 0 0 2 TBL1Y chrY:6938369 5'GT 6938369 Upstream 57bp
chr7 38259194 38259194 1 + G C ESCA 38259190 + 38259170 38259210 41 CCTGATAGTTCAGGATGCTTCAGAGAGGGCAGCACTTATAC CCTGATAGTTCAGGATGCTTCAGACAGGGCAGCACTTATAC < 41bp 0.789404431893982 0.521583973842774 0.7826898 0.14872584 prediction 0.535640916102416 Functional Loss - STARD3NL ENSG00000010270 CDS Human protein_coding chr7:38259190 chr7:38259194 nonsynonymous SNV 0.957 1 25 hm5C_associated_SNPs_60402 0 0 1 0 2 STARD3NL chr7:38259166 3'AG 38259166 Downstream 29bp
chr7 38259194 38259194 1 + G C ESCA 38259190 + 38259170 38259210 41 CCTGATAGTTCAGGATGCTTCAGAGAGGGCAGCACTTATAC CCTGATAGTTCAGGATGCTTCAGACAGGGCAGCACTTATAC < 41bp 0.789404431893982 0.521583973842774 0.7826898 0.14872584 prediction 0.535640916102416 Functional Loss - STARD3NL ENSG00000010270 CDS Human protein_coding chr7:38259190 chr7:38259194 nonsynonymous SNV 0.957 1 25 hm5C_associated_SNPs_60402 0 0 1 0 2 STARD3NL chr7:38259261 5'GT 38259261 Upstream 68bp
chr2 32396412 32396412 1 + G T UCEC 32396410 + 32396390 32396430 41 CCTTTTTTGGCAAGTTGTTACGGGAATTTAGACTTGTAGCA CCTTTTTTGGCAAGTTGTTACGTGAATTTAGACTTGTAGCA < 41bp 0.76779550417691 0.458758025314029 0.9030285 0.33623376 prediction 0.53559100835382 Functional Loss - SLC30A6 ENSG00000152683 CDS Human protein_coding chr2:32396410 chr2:32396412 synonymous SNV . 0 23 hm5C_associated_SNPs_60406 0 0 1 0 1 SLC30A6 chr2:32396356 3'AG 32396356 Downstream 57bp
chr17 45820496 45820496 1 + G T OV 45820493 + 45820473 45820513 41 CAGGAGCGCACTGGATGCGCCAGGAAGTTTCATTTGGGAAA CAGGAGCGCACTGGATGCGCCAGTAAGTTTCATTTGGGAAA < 41bp 0.767794216427623 0.379072818385876 0.49674365 0.15396899 prediction 0.535588432855245 Functional Loss - TBX21 ENSG00000073861 CDS Human protein_coding chr17:45820493 chr17:45820496 stopgain 1.000 1 24 hm5C_associated_SNPs_60407 0 0 0 0 2 TBX21 chr17:45820437 3'AG 45820437 Downstream 60bp
chr17 45820496 45820496 1 + G T OV 45820493 + 45820473 45820513 41 CAGGAGCGCACTGGATGCGCCAGGAAGTTTCATTTGGGAAA CAGGAGCGCACTGGATGCGCCAGTAAGTTTCATTTGGGAAA < 41bp 0.767794216427623 0.379072818385876 0.49674365 0.15396899 prediction 0.535588432855245 Functional Loss - TBX21 ENSG00000073861 CDS Human protein_coding chr17:45820493 chr17:45820496 stopgain 1.000 1 24 hm5C_associated_SNPs_60407 0 0 0 0 2 TBX21 chr17:45820558 5'GT 45820558 Upstream 63bp
chr17 45820495 45820495 1 + G T OV 45820493 + 45820473 45820513 41 CAGGAGCGCACTGGATGCGCCAGGAAGTTTCATTTGGGAAA CAGGAGCGCACTGGATGCGCCATGAAGTTTCATTTGGGAAA < 41bp 0.767794216427623 0.427285012247552 0.49674365 0.11296195 prediction 0.535588432855245 Functional Loss - TBX21 ENSG00000073861 CDS Human protein_coding chr17:45820493 chr17:45820495 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_60408 0 0 0 0 2 TBX21 chr17:45820437 3'AG 45820437 Downstream 59bp
chr17 45820495 45820495 1 + G T OV 45820493 + 45820473 45820513 41 CAGGAGCGCACTGGATGCGCCAGGAAGTTTCATTTGGGAAA CAGGAGCGCACTGGATGCGCCATGAAGTTTCATTTGGGAAA < 41bp 0.767794216427623 0.427285012247552 0.49674365 0.11296195 prediction 0.535588432855245 Functional Loss - TBX21 ENSG00000073861 CDS Human protein_coding chr17:45820493 chr17:45820495 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_60408 0 0 0 0 2 TBX21 chr17:45820558 5'GT 45820558 Upstream 64bp
chr12 3149415 3149415 1 + C T SKCM 3149413 + 3149393 3149433 41 AACAGCGTGCTGGAGAACTTCACCATCCTGCAGGTGTGCGG AACAGCGTGCTGGAGAACTTCATCATCCTGCAGGTGTGCGG < 41bp 0.7782504395763 0.510466734587478 0.10541704 0.07866794 prediction 0.535567409977645 Functional Loss - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3149413 chr12:3149415 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_60410 0 0 1 0 1 TEAD4 chr12:3149425 5'GT 3149425 Upstream 11bp
chr13 102344970 102344970 1 + C T CESC 102344968 + 102344948 102344988 41 TGGCAAATGCACCTGCTATCCTCCAGGAGATCGCCGGGTGT TGGCAAATGCACCTGCTATCCTTCAGGAGATCGCCGGGTGT < 41bp 0.829013608070828 0.561232665795332 0.9300132 0.22404966 prediction 0.535561884550992 Functional Loss - ITGBL1 ENSG00000198542 CDS Human protein_coding chr13:102344968 chr13:102344970 nonsynonymous SNV 0.923 2 23 hm5C_associated_SNPs_60411 0 0 0 0 2 ITGBL1 chr13:102344935 3'AG 102344935 Downstream 36bp
chr13 102344970 102344970 1 + C T CESC 102344968 + 102344948 102344988 41 TGGCAAATGCACCTGCTATCCTCCAGGAGATCGCCGGGTGT TGGCAAATGCACCTGCTATCCTTCAGGAGATCGCCGGGTGT < 41bp 0.829013608070828 0.561232665795332 0.9300132 0.22404966 prediction 0.535561884550992 Functional Loss - ITGBL1 ENSG00000198542 CDS Human protein_coding chr13:102344968 chr13:102344970 nonsynonymous SNV 0.923 2 23 hm5C_associated_SNPs_60411 0 0 0 0 2 ITGBL1 chr13:102345051 5'GT 102345051 Upstream 82bp
chr19 41515264 41515264 1 + G T UCEC 41515261 + 41515241 41515281 41 ACCCTGGACCCCAGCGCCCCCAAGGACCTCATCGACACCTA ACCCTGGACCCCAGCGCCCCCAATGACCTCATCGACACCTA < 41bp 0.767764698816305 0.366398973313024 0.21053928 0.07210979 prediction 0.53552939763261 Functional Loss - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41515261 chr19:41515264 nonsynonymous SNV 0.019 2 24 hm5C_associated_SNPs_60414 0 0 0 0 1 CYP2B6 chr19:41515300 5'GT 41515300 Upstream 37bp
chr12 7867870 7867870 1 + A C STAD 7867866 + 7867846 7867886 41 CGAATCTGTTTCCCCTCTATCGGAAGCTTTACTCCGTCGAG CGAATCTGTTTCCCCTCTATCGGACGCTTTACTCCGTCGAG < 41bp 0.906404832104121 0.638643884249822 0.9578048 0.9513817 prediction 0.535521895708598 Functional Loss - DPPA3 ENSG00000187569 CDS Human protein_coding chr12:7867866 chr12:7867870 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_60415 0 0 0 0 1 DPPA3 chr12:7867779 3'AG 7867779 Downstream 92bp
chr7 142494957 142494957 1 + A T LUAD 142494953 + 142494933 142494973 41 AACGTCCTGACTTTCGGGGCCGGCAGCAGGCTGACCGTGCT AACGTCCTGACTTTCGGGGCCGGCTGCAGGCTGACCGTGCT < 41bp 0.774163714099863 0.506403517187812 0.80539745 0.7953547 prediction 0.535520393824101 Functional Loss - PRSS3P2;EPHB6 ENSG00000211770 CDS Human TR_J_gene chr7:142494953 chr7:142494957 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_60416 0 0 0 0 1 PRSS3P2;EPHB6 chr7:142494975 5'GT 142494975 Upstream 19bp
chr22 21990750 21990750 1 + G C rs568639577 21990746 + 21990726 21990766 41 CTGCAGCAGCAGCAGGTTCACGAAGAAGAAGCCGCTGCCCT CTGCAGCAGCAGCAGGTTCACGAACAAGAAGCCGCTGCCCT < 41bp 0.767760155926452 0.481215129535595 0.7534114 0.12777263 prediction 0.535520311852903 Functional Loss - CCDC116 ENSG00000161180 CDS Human protein_coding chr22:21990746 chr22:21990750 nonsynonymous SNV 0.366 0 25 hm5C_associated_SNPs_60417 0 0 0 0 1 CCDC116 chr22:21990721 3'AG 21990721 Downstream 30bp
chr20 61943786 61943786 1 + G C SKCM 61943782 + 61943762 61943802 41 CCTGCTGCAGACAGAGGCTCCTGGGAACGCCACCTCGGCCA CCTGCTGCAGACAGAGGCTCCTGGCAACGCCACCTCGGCCA < 41bp 0.813061640236813 0.545308013322536 0.94495904 0.933259 prediction 0.535507253828554 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61943782 chr20:61943786 synonymous SNV . 0 25 hm5C_associated_SNPs_60418 0 0 0 0 1 COL20A1 chr20:61943772 3'AG 61943772 Downstream 15bp
chr2 102851677 102851677 1 + A T OV 102851673 + 102851653 102851693 41 GTGAGATACCACATGCCGCCCAGAAGGTGTCGGCCGTTTCC GTGAGATACCACATGCCGCCCAGATGGTGTCGGCCGTTTCC < 41bp 0.767731842371202 0.459672719953896 0.32142836 0.24953994 prediction 0.535463684742405 Functional Loss - IL1RL2 ENSG00000115598 CDS Human protein_coding chr2:102851673 chr2:102851677 nonsynonymous SNV 0.002 3 25 hm5C_associated_SNPs_60419 0 0 0 0 1 IL1RL2 chr2:102851737 5'GT 102851737 Upstream 61bp
chr6 30297538 30297538 1 + G T UCEC 30297536 + 30297516 30297556 41 TGCCACTGGACGATGCTACACAGGAGTACAAGGTGGGGAAG TGCCACTGGACGATGCTACACATGAGTACAAGGTGGGGAAG < 41bp 0.831917476965029 0.564194728371531 0.6692823 0.03342545 prediction 0.535445497186996 Functional Loss - TRIM39;TRIM39-RPP21 ENSG00000204599;ENSG00000248167 CDS Human other chr6:30297536 chr6:30297538 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_60420 0 0 1 0 1 TRIM39;TRIM39-RPP21 chr6:30297547 5'GT 30297547 Upstream 10bp
chrX 122387172 122387172 1 + G T LUAD 122387169 + 122387149 122387189 41 TGCAGTCTGCTCCCAGTTCTCGAGAGGGGTGTATGCCATCT TGCAGTCTGCTCCCAGTTCTCGATAGGGGTGTATGCCATCT < 41bp 0.888022766842322 0.620304301753226 0.9207537 0.37960762 prediction 0.535436930178191 Functional Loss - GRIA3 ENSG00000125675 CDS Human protein_coding chrX:122387169 chrX:122387172 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_60422 0 0 0 0 1 GRIA3 chrX:122387154 3'AG 122387154 Downstream 19bp
chr1 150922974 150922974 1 + G T UCEC 150922972 + 150922952 150922992 41 AGCCTCTGCCCCAGCACCCTCAGCACTCCCGGCCCCTCCAG AGCCTCTGCCCCAGCACCCTCATCACTCCCGGCCCCTCCAG < 41bp 0.881067849574317 0.613350244875452 0.18219063 0.039938927 prediction 0.53543520939773 Functional Loss - SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150922972 chr1:150922974 nonsynonymous SNV 0.024 0 23 hm5C_associated_SNPs_60423 0 0 1 0 1 SETDB1 chr1:150922934 3'AG 150922934 Downstream 41bp
chr1 29639093 29639093 1 + C T UCEC 29639091 + 29639071 29639111 41 ACTCTGCCCGGCACGAGGTCCGCCAGTTCCACTTCACAGCG ACTCTGCCCGGCACGAGGTCCGTCAGTTCCACTTCACAGCG < 41bp 0.781770615694242 0.514053626620751 0.4481394 0.38933045 prediction 0.535433978146981 Functional Loss - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29639091 chr1:29639093 synonymous SNV . 0 23 hm5C_associated_SNPs_60424 0 0 1 0 1 PTPRU chr1:29639064 3'AG 29639064 Downstream 30bp
chr17 38450670 38450670 1 + G T CESC 38450667 + 38450647 38450687 41 AATTCTACCTAGGCTTCAAGCTAGAGAAAAATGTAAGCCAC AATTCTACCTAGGCTTCAAGCTATAGAAAAATGTAAGCCAC < 41bp 0.896261842518954 0.628549400650511 0.06957433 0.041579157 prediction 0.535424883736884 Functional Loss - CDC6 ENSG00000094804 CDS Human protein_coding chr17:38450667 chr17:38450670 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_60426 0 0 1 0 2 CDC6 chr17:38450616 3'AG 38450616 Downstream 55bp
chr17 38450670 38450670 1 + G T CESC 38450667 + 38450647 38450687 41 AATTCTACCTAGGCTTCAAGCTAGAGAAAAATGTAAGCCAC AATTCTACCTAGGCTTCAAGCTATAGAAAAATGTAAGCCAC < 41bp 0.896261842518954 0.628549400650511 0.06957433 0.041579157 prediction 0.535424883736884 Functional Loss - CDC6 ENSG00000094804 CDS Human protein_coding chr17:38450667 chr17:38450670 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_60426 0 0 1 0 2 CDC6 chr17:38450755 5'GT 38450755 Upstream 86bp
chr17 30521050 30521050 1 + G T UCEC 30521047 + 30521027 30521067 41 TTTTTATCCAGAGAGGGAGACACGAAACTACTTGGACTGTG TTTTTATCCAGAGAGGGAGACACTAAACTACTTGGACTGTG < 41bp 0.767707562670065 0.412029318632785 0.9159324 0.88258886 prediction 0.53541512534013 Functional Loss - RHOT1 ENSG00000126858 CDS Human protein_coding chr17:30521047 chr17:30521050 stopgain 1.000 1 24 hm5C_associated_SNPs_60429 0 0 1 1 2 RHOT1 chr17:30521006 3'AG 30521006 Downstream 45bp
chr17 30521050 30521050 1 + G T UCEC 30521047 + 30521027 30521067 41 TTTTTATCCAGAGAGGGAGACACGAAACTACTTGGACTGTG TTTTTATCCAGAGAGGGAGACACTAAACTACTTGGACTGTG < 41bp 0.767707562670065 0.412029318632785 0.9159324 0.88258886 prediction 0.53541512534013 Functional Loss - RHOT1 ENSG00000126858 CDS Human protein_coding chr17:30521047 chr17:30521050 stopgain 1.000 1 24 hm5C_associated_SNPs_60429 0 0 1 1 2 RHOT1 chr17:30521126 5'GT 30521126 Upstream 77bp
chr4 15443809 15443809 1 + G T UCEC 15443807 + 15443787 15443827 41 TGAAGGTTTGAGAGGTAAGACTGGACCGCTAGGTCTTGCCG TGAAGGTTTGAGAGGTAAGACTTGACCGCTAGGTCTTGCCG < 41bp 0.833109396893898 0.565402293010488 0.5820162 0.2681226 prediction 0.53541420776682 Functional Loss - C1QTNF7 ENSG00000163145 CDS Human protein_coding chr4:15443807 chr4:15443809 stopgain 0.995 1 23 hm5C_associated_SNPs_60430 0 0 0 0 1 C1QTNF7 chr4:15443792 3'AG 15443792 Downstream 18bp
chr17 78039309 78039309 1 + G T rs61739354 78039307 + 78039287 78039327 41 TGCACCGAGATCGACGCCATCAGCGTGGAGAAGAGGCGCAT TGCACCGAGATCGACGCCATCATCGTGGAGAAGAGGCGCAT < 41bp 0.767706506361891 0.413952166979999 0.85572135 0.27595943 prediction 0.535413012723782 Functional Loss - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78039307 chr17:78039309 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_60431 2 0 0 0 2 CCDC40 chr17:78039284 3'AG 78039284 Downstream 26bp
chr17 78039309 78039309 1 + G T rs61739354 78039307 + 78039287 78039327 41 TGCACCGAGATCGACGCCATCAGCGTGGAGAAGAGGCGCAT TGCACCGAGATCGACGCCATCATCGTGGAGAAGAGGCGCAT < 41bp 0.767706506361891 0.413952166979999 0.85572135 0.27595943 prediction 0.535413012723782 Functional Loss - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78039307 chr17:78039309 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_60431 2 0 0 0 2 CCDC40 chr17:78039405 5'GT 78039405 Upstream 97bp
chr1 24120404 24120404 1 + G T UCEC 24120401 + 24120381 24120421 41 CCAGAGGACGAGGCTGGCATCAAGAAGGCAGCAGAGAACAG CCAGAGGACGAGGCTGGCATCAATAAGGCAGCAGAGAACAG < 41bp 0.907333762382547 0.639628646320084 0.5879195 0.33969665 prediction 0.535410232124926 Functional Loss - LYPLA2 ENSG00000011009 CDS Human protein_coding chr1:24120401 chr1:24120404 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_60433 0 0 0 0 2 LYPLA2 chr1:24120350 3'AG 24120350 Downstream 55bp
chr1 24120404 24120404 1 + G T UCEC 24120401 + 24120381 24120421 41 CCAGAGGACGAGGCTGGCATCAAGAAGGCAGCAGAGAACAG CCAGAGGACGAGGCTGGCATCAATAAGGCAGCAGAGAACAG < 41bp 0.907333762382547 0.639628646320084 0.5879195 0.33969665 prediction 0.535410232124926 Functional Loss - LYPLA2 ENSG00000011009 CDS Human protein_coding chr1:24120401 chr1:24120404 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_60433 0 0 0 0 2 LYPLA2 chr1:24120420 5'GT 24120420 Upstream 17bp
chr15 74177364 74177364 1 + G T BRCA 74177361 + 74177341 74177381 41 CAGAGTACCAGCAGGGCTTCCATGAGATGATGATGCTCTTC CAGAGTACCAGCAGGGCTTCCATTAGATGATGATGCTCTTC < 41bp 0.76767866971793 0.377831171688859 0.23452729 0.10815948 prediction 0.53535733943586 Functional Loss - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74177361 chr15:74177364 stopgain 0.996 1 24 hm5C_associated_SNPs_60437 0 0 0 0 1 TBC1D21 chr15:74177444 5'GT 74177444 Upstream 81bp
chrX 100490865 100490865 1 + C T SKCM 100490863 + 100490843 100490883 41 GTCCAGGTTAGAGCTGCTGTCACCAGCCCTGCACCTCCTCA GTCCAGGTTAGAGCTGCTGTCATCAGCCCTGCACCTCCTCA < 41bp 0.77814703036433 0.510477170692266 0.33152428 0.16662404 prediction 0.535339719344127 Functional Loss - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100490863 chrX:100490865 nonsynonymous SNV 0.223 1 23 hm5C_associated_SNPs_60438 0 0 0 0 1 DRP2 chrX:100490849 3'AG 100490849 Downstream 17bp
chr7 142997095 142997095 1 + C T UCEC 142997093 + 142997073 142997113 41 TCCTGCATCGTGGCACTCCTCTCGCATGGTGTGGAGGGCGC TCCTGCATCGTGGCACTCCTCTTGCATGGTGTGGAGGGCGC < 41bp 0.809854939209063 0.54218886404221 0.13376835 0.047670513 prediction 0.535332150333706 Functional Loss - CASP2 ENSG00000106144 CDS Human protein_coding chr7:142997093 chr7:142997095 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_60439 0 0 1 0 2 CASP2 chr7:142997016 3'AG 142997016 Downstream 80bp
chr7 142997095 142997095 1 + C T UCEC 142997093 + 142997073 142997113 41 TCCTGCATCGTGGCACTCCTCTCGCATGGTGTGGAGGGCGC TCCTGCATCGTGGCACTCCTCTTGCATGGTGTGGAGGGCGC < 41bp 0.809854939209063 0.54218886404221 0.13376835 0.047670513 prediction 0.535332150333706 Functional Loss - CASP2 ENSG00000106144 CDS Human protein_coding chr7:142997093 chr7:142997095 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_60439 0 0 1 0 2 CASP2 chr7:142997144 5'GT 142997144 Upstream 50bp
chr6 36982477 36982477 1 + G C rs147148066 36982473 + 36982453 36982493 41 GCACTCCAATGCAGCCATCACTGAGATGGTAAGCAGCCCGC GCACTCCAATGCAGCCATCACTGACATGGTAAGCAGCCCGC < 41bp 0.767645648466291 0.470586176182354 0.3144698 0.14325342 prediction 0.535291296932582 Functional Loss - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36982473 chr6:36982477 nonsynonymous SNV 0.922 4 25 hm5C_associated_SNPs_60443 0 0 0 0 2 FGD2 chr6:36982422 3'AG 36982422 Downstream 56bp
chr6 36982477 36982477 1 + G C rs147148066 36982473 + 36982453 36982493 41 GCACTCCAATGCAGCCATCACTGAGATGGTAAGCAGCCCGC GCACTCCAATGCAGCCATCACTGACATGGTAAGCAGCCCGC < 41bp 0.767645648466291 0.470586176182354 0.3144698 0.14325342 prediction 0.535291296932582 Functional Loss - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36982473 chr6:36982477 nonsynonymous SNV 0.922 4 25 hm5C_associated_SNPs_60443 0 0 0 0 2 FGD2 chr6:36982480 5'GT 36982480 Upstream 4bp
chr1 156883815 156883815 1 + G T UCEC 156883813 + 156883793 156883833 41 CCCAGGCAGCCTCCTCAGTTCTGGGACAGCCAGAGGCGGCG CCCAGGCAGCCTCCTCAGTTCTTGGACAGCCAGAGGCGGCG < 41bp 0.767628312342185 0.422593973795067 0.324695 0.07584825 prediction 0.53525662468437 Functional Loss - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156883813 chr1:156883815 nonsynonymous SNV 0.495 1 23 hm5C_associated_SNPs_60445 0 0 0 0 1 PEAR1 chr1:156883892 5'GT 156883892 Upstream 78bp
chr2 101096990 101096990 1 + G T UCEC 101096987 + 101096967 101097007 41 ACTGCTGCAGTGGACTTCACCAAGAAGGTACACAAGAGCCT ACTGCTGCAGTGGACTTCACCAATAAGGTACACAAGAGCCT < 41bp 0.896099341845327 0.62847517274659 0.44732687 0.18184099 prediction 0.535248338197474 Functional Loss - NMS ENSG00000204640 CDS Human protein_coding chr2:101096987 chr2:101096990 nonsynonymous SNV 0.319 0 24 hm5C_associated_SNPs_60446 0 0 0 0 2 NMS chr2:101096958 3'AG 101096958 Downstream 33bp
chr2 101096990 101096990 1 + G T UCEC 101096987 + 101096967 101097007 41 ACTGCTGCAGTGGACTTCACCAAGAAGGTACACAAGAGCCT ACTGCTGCAGTGGACTTCACCAATAAGGTACACAAGAGCCT < 41bp 0.896099341845327 0.62847517274659 0.44732687 0.18184099 prediction 0.535248338197474 Functional Loss - NMS ENSG00000204640 CDS Human protein_coding chr2:101096987 chr2:101096990 nonsynonymous SNV 0.319 0 24 hm5C_associated_SNPs_60446 0 0 0 0 2 NMS chr2:101096993 5'GT 101096993 Upstream 4bp
chr4 70155434 70155434 1 + C T SKCM 70155432 + 70155412 70155452 41 AGATGCCTTAGGTCTCAATACTCGGCTGTATAAGTGGATAC AGATGCCTTAGGTCTCAATACTTGGCTGTATAAGTGGATAC < 41bp 0.772659358191484 0.505036121447836 0.48122326 0.29601297 prediction 0.535246473487295 Functional Loss - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70155432 chr4:70155434 nonsynonymous SNV 0.008 1 23 hm5C_associated_SNPs_60447 0 0 0 0 2 UGT2B28 chr4:70155383 3'AG 70155383 Downstream 52bp
chr4 70155434 70155434 1 + C T SKCM 70155432 + 70155412 70155452 41 AGATGCCTTAGGTCTCAATACTCGGCTGTATAAGTGGATAC AGATGCCTTAGGTCTCAATACTTGGCTGTATAAGTGGATAC < 41bp 0.772659358191484 0.505036121447836 0.48122326 0.29601297 prediction 0.535246473487295 Functional Loss - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70155432 chr4:70155434 nonsynonymous SNV 0.008 1 23 hm5C_associated_SNPs_60447 0 0 0 0 2 UGT2B28 chr4:70155470 5'GT 70155470 Upstream 37bp
chrX 155169401 155169401 1 + C T HNSC 155169399 + 155169379 155169419 41 AACTACCAGCAGAAATCTTGCTCGAGCCATGTGTATGAAGA AACTACCAGCAGAAATCTTGCTTGAGCCATGTGTATGAAGA < 41bp 0.781495757232881 0.513875695641042 0.12630358 0.041962147 prediction 0.535240123183678 Functional Loss - VAMP7 ENSG00000124333 CDS Human protein_coding chrX:155169399 chrX:155169401 stopgain 0.986 0 23 hm5C_associated_SNPs_60448 0 0 1 0 2 VAMP7 chrX:155169365 3'AG 155169365 Downstream 37bp
chrX 155169401 155169401 1 + C T HNSC 155169399 + 155169379 155169419 41 AACTACCAGCAGAAATCTTGCTCGAGCCATGTGTATGAAGA AACTACCAGCAGAAATCTTGCTTGAGCCATGTGTATGAAGA < 41bp 0.781495757232881 0.513875695641042 0.12630358 0.041962147 prediction 0.535240123183678 Functional Loss - VAMP7 ENSG00000124333 CDS Human protein_coding chrX:155169399 chrX:155169401 stopgain 0.986 0 23 hm5C_associated_SNPs_60448 0 0 1 0 2 VAMP7 chrX:155169457 5'GT 155169457 Upstream 57bp
chr2 241973264 241973264 1 + C T BLCA 241973262 + 241973242 241973282 41 CACGCCAGCAGCGGGGGCAACGCCACTGGCCTCGGGGGCAT CACGCCAGCAGCGGGGGCAACGTCACTGGCCTCGGGGGCAT < 41bp 0.769397607297172 0.50178874340382 0.90323794 0.84512913 prediction 0.535217727786704 Functional Loss - SNED1 ENSG00000162804 CDS Human protein_coding chr2:241973262 chr2:241973264 nonsynonymous SNV 0.059 0 23 hm5C_associated_SNPs_60450 0 0 0 0 1 SNED1 chr2:241973292 5'GT 241973292 Upstream 29bp
chr5 133725924 133725924 1 + G T LGG 133725922 + 133725902 133725942 41 TTCTTTCCTCCTAGTCTCTGCTGGATGAACCGAATCCTAAC TTCTTTCCTCCTAGTCTCTGCTTGATGAACCGAATCCTAAC < 41bp 0.767598337206756 0.463757402542876 0.78663754 0.26697105 prediction 0.535196674413512 Functional Loss - UBE2B ENSG00000119048 CDS Human protein_coding chr5:133725922 chr5:133725924 stopgain 1.000 0 23 hm5C_associated_SNPs_60452 0 0 1 0 1 UBE2B chr5:133725916 3'AG 133725916 Downstream 9bp
chr5 133725925 133725925 1 + G T LIHC 133725922 + 133725902 133725942 41 TTCTTTCCTCCTAGTCTCTGCTGGATGAACCGAATCCTAAC TTCTTTCCTCCTAGTCTCTGCTGTATGAACCGAATCCTAAC < 41bp 0.767598337206756 0.404384352125372 0.78663754 0.29724476 prediction 0.535196674413512 Functional Loss - UBE2B ENSG00000119048 CDS Human protein_coding chr5:133725922 chr5:133725925 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_60453 0 0 1 0 1 UBE2B chr5:133725916 3'AG 133725916 Downstream 10bp
chr20 53208300 53208300 1 + G T HNSC 53208298 + 53208278 53208318 41 CTTGGCCGCTAAGCGCCCTGCGGCGGTATGGACGTGATACT CTTGGCCGCTAAGCGCCCTGCGTCGGTATGGACGTGATACT < 41bp 0.767575210793535 0.422211662936945 0.7499446 0.027686924 prediction 0.53515042158707 Functional Loss - DOK5 ENSG00000101134 CDS Human protein_coding chr20:53208298 chr20:53208300 synonymous SNV . 0 23 hm5C_associated_SNPs_60454 0 0 0 0 1 DOK5 chr20:53208344 5'GT 53208344 Upstream 45bp
chr5 148999961 148999961 1 + C T rs199573763 148999959 + 148999939 148999979 41 ACGAATACAATCTGGACATCCCCGAGGGGCCTGCAGTGCAG ACGAATACAATCTGGACATCCCTGAGGGGCCTGCAGTGCAG < 41bp 0.767570680726253 0.486665037013981 0.12101737 0.12828982 prediction 0.535141361452506 Functional Loss - ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:148999959 chr5:148999961 synonymous SNV . 0 23 hm5C_associated_SNPs_60456 0 0 0 0 2 ARHGEF37 chr5:148999917 3'AG 148999917 Downstream 45bp
chr5 148999961 148999961 1 + C T rs199573763 148999959 + 148999939 148999979 41 ACGAATACAATCTGGACATCCCCGAGGGGCCTGCAGTGCAG ACGAATACAATCTGGACATCCCTGAGGGGCCTGCAGTGCAG < 41bp 0.767570680726253 0.486665037013981 0.12101737 0.12828982 prediction 0.535141361452506 Functional Loss - ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:148999959 chr5:148999961 synonymous SNV . 0 23 hm5C_associated_SNPs_60456 0 0 0 0 2 ARHGEF37 chr5:149000027 5'GT 149000027 Upstream 67bp
chr4 174216642 174216642 1 + C T BRCA 174216640 + 174216620 174216660 41 AAGGGAAGGTTTAATTCAAGCACGAAGTATTGGTGCTCAGA AAGGGAAGGTTTAATTCAAGCATGAAGTATTGGTGCTCAGA < 41bp 0.767530764067683 0.491402565037885 0.24719116 0.17773655 prediction 0.535061528135366 Functional Loss - GALNT7 ENSG00000109586 CDS Human protein_coding chr4:174216640 chr4:174216642 stopgain 0.996 1 23 hm5C_associated_SNPs_60462 0 0 1 0 2 GALNT7 chr4:174216547 3'AG 174216547 Downstream 96bp
chr4 174216642 174216642 1 + C T BRCA 174216640 + 174216620 174216660 41 AAGGGAAGGTTTAATTCAAGCACGAAGTATTGGTGCTCAGA AAGGGAAGGTTTAATTCAAGCATGAAGTATTGGTGCTCAGA < 41bp 0.767530764067683 0.491402565037885 0.24719116 0.17773655 prediction 0.535061528135366 Functional Loss - GALNT7 ENSG00000109586 CDS Human protein_coding chr4:174216640 chr4:174216642 stopgain 0.996 1 23 hm5C_associated_SNPs_60462 0 0 1 0 2 GALNT7 chr4:174216677 5'GT 174216677 Upstream 36bp
chr3 32860341 32860341 1 + G T LUSC 32860338 + 32860318 32860358 41 CAGCGGCGCAGCAGCTCGGGCTCGGGCCGCCCTTTCCCGGC CAGCGGCGCAGCAGCTCGGGCTCTGGCCGCCCTTTCCCGGC < 41bp 0.89767374209356 0.630146397832819 0.2983535 0.26427662 prediction 0.535054688521482 Functional Loss - TRIM71 ENSG00000206557 CDS Human protein_coding chr3:32860338 chr3:32860341 nonsynonymous SNV 0.698 2 24 hm5C_associated_SNPs_60465 0 0 0 0 1 TRIM71 chr3:32860424 5'GT 32860424 Upstream 84bp
chr7 128865277 128865277 1 + G T UCEC 128865274 + 128865254 128865294 41 ACCGAGGCGCCGCGCACAGTCAAGAAGGTACTGGGGCCGGG ACCGAGGCGCCGCGCACAGTCAATAAGGTACTGGGGCCGGG < 41bp 0.887721033929846 0.62021977173666 0.51375586 0.13881606 prediction 0.535002524386371 Functional Loss - AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:128865274 chr7:128865277 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_60469 0 0 1 0 1 AHCYL2 chr7:128865280 5'GT 128865280 Upstream 4bp
chr19 15791312 15791312 1 + A T LUAD 15791308 + 15791288 15791328 41 TCCTATATAACGATCTTCAACAAGAGTGCAAACATCATGCT TCCTATATAACGATCTTCAACAAGTGTGCAAACATCATGCT < 41bp 0.846169691298937 0.578673300403738 0.017198801 0.08281726 prediction 0.5349927817904 Functional Loss - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15791308 chr19:15791312 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_60470 0 0 1 0 1 CYP4F12 chr19:15791329 5'GT 15791329 Upstream 18bp
chr2 220402671 220402671 1 + G T rs11689281 220402669 + 220402649 220402689 41 CTGCAGAGTCCCTGCCCGAGCCGGGGCCGAGTGGAGGGTGG CTGCAGAGTCCCTGCCCGAGCCTGGGCCGAGTGGAGGGTGG < 41bp 0.767470896559454 0.413649499938635 0.89583373 0.5616106 prediction 0.534941793118909 Functional Loss - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220402669 chr2:220402671 nonsynonymous SNV 0.631 0 23 hm5C_associated_SNPs_60473 0 0 1 0 1 ASIC4 chr2:220402655 3'AG 220402655 Downstream 17bp
chr1 144014034 144014034 1 + G T LUAD 144014032 + 144014012 144014052 41 AGATGGACTACTCCCGCAACCTGGAGAAGCTGGCAGAACGC AGATGGACTACTCCCGCAACCTTGAGAAGCTGGCAGAACGC < 41bp 0.844280165540132 0.576814915213613 0.8072372 0.303223 prediction 0.534930500653039 Functional Loss - FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014032 chr1:144014034 . . 0 23 hm5C_associated_SNPs_60474 0 0 1 0 1 FAM72C;NBPF20 chr1:144014093 5'GT 144014093 Upstream 60bp
chr3 119526124 119526124 1 + G T LUAD 119526121 + 119526101 119526141 41 GAGGTGAGACCCAAAGAAAGCTGGAACCATGCTGACTTTGT GAGGTGAGACCCAAAGAAAGCTGTAACCATGCTGACTTTGT < 41bp 0.76746394156756 0.381106294418747 0.40409854 0.25903106 prediction 0.534927883135119 Functional Loss - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119526121 chr3:119526124 nonsynonymous SNV 0.054 2 24 hm5C_associated_SNPs_60475 0 0 1 0 1 NR1I2 chr3:119526076 3'AG 119526076 Downstream 49bp
chr8 99139910 99139910 1 + C T SKCM 99139908 + 99139888 99139928 41 GAAGTGAATGAGCAGTCTTCCTCCAAAGGGATGTTTAGAAA GAAGTGAATGAGCAGTCTTCCTTCAAAGGGATGTTTAGAAA < 41bp 0.829411950970022 0.561953616357747 0.9595642 0.18887287 prediction 0.53491666922455 Functional Loss - POP1 ENSG00000104356 CDS Human protein_coding chr8:99139908 chr8:99139910 nonsynonymous SNV 0.926 1 23 hm5C_associated_SNPs_60477 0 0 1 0 2 POP1 chr8:99139823 3'AG 99139823 Downstream 88bp
chr8 99139910 99139910 1 + C T SKCM 99139908 + 99139888 99139928 41 GAAGTGAATGAGCAGTCTTCCTCCAAAGGGATGTTTAGAAA GAAGTGAATGAGCAGTCTTCCTTCAAAGGGATGTTTAGAAA < 41bp 0.829411950970022 0.561953616357747 0.9595642 0.18887287 prediction 0.53491666922455 Functional Loss - POP1 ENSG00000104356 CDS Human protein_coding chr8:99139908 chr8:99139910 nonsynonymous SNV 0.926 1 23 hm5C_associated_SNPs_60477 0 0 1 0 2 POP1 chr8:99139990 5'GT 99139990 Upstream 81bp
chrX 114082667 114082667 1 + G T UCEC 114082664 + 114082644 114082684 41 TGCACCTCTGCGCTATATCGCTGGATCGGTATGTAGCAATA TGCACCTCTGCGCTATATCGCTGTATCGGTATGTAGCAATA < 41bp 0.767456495825621 0.404916212378977 0.3675703 0.08652049 prediction 0.534912991651242 Functional Loss - HTR2C ENSG00000147246 CDS Human protein_coding chrX:114082664 chrX:114082667 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_60479 0 0 0 0 2 HTR2C chrX:114082671 5'GT 114082671 Upstream 5bp
chrX 114082667 114082667 1 + G T UCEC 114082664 + 114082644 114082684 41 TGCACCTCTGCGCTATATCGCTGGATCGGTATGTAGCAATA TGCACCTCTGCGCTATATCGCTGTATCGGTATGTAGCAATA < 41bp 0.767456495825621 0.404916212378977 0.3675703 0.08652049 prediction 0.534912991651242 Functional Loss - HTR2C ENSG00000147246 CDS Human protein_coding chrX:114082664 chrX:114082667 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_60479 0 0 0 0 2 HTR2C chrX:114082766 5'GT 114082766 Upstream 100bp
chrX 2712644 2712644 1 + G T LUAD 2712642 + 2712622 2712662 41 GCCCAGGCCACGGCCGCCTGCAGGTAGGTGCCGAGCCTCCC GCCCAGGCCACGGCCGCCTGCATGTAGGTGCCGAGCCTCCC < 41bp 0.886048352206356 0.618597839308744 0.43999112 0.20739847 prediction 0.534901025795223 Functional Loss - XG ENSG00000124343 CDS Human protein_coding chrX:2712642 chrX:2712644 stopgain 0.300 0 23 hm5C_associated_SNPs_60480 0 0 0 0 2 XG chrX:2712576 3'AG 2712576 Downstream 69bp
chrX 2712644 2712644 1 + G T LUAD 2712642 + 2712622 2712662 41 GCCCAGGCCACGGCCGCCTGCAGGTAGGTGCCGAGCCTCCC GCCCAGGCCACGGCCGCCTGCATGTAGGTGCCGAGCCTCCC < 41bp 0.886048352206356 0.618597839308744 0.43999112 0.20739847 prediction 0.534901025795223 Functional Loss - XG ENSG00000124343 CDS Human protein_coding chrX:2712642 chrX:2712644 stopgain 0.300 0 23 hm5C_associated_SNPs_60480 0 0 0 0 2 XG chrX:2712644 5'GT 2712644 Upstream 1bp
chr11 20639323 20639323 1 + G T HNSC 20639321 + 20639301 20639341 41 CTTTGTGCTGAAGATTTCTGCAGGGATTGAATATCCTGGCG CTTTGTGCTGAAGATTTCTGCATGGATTGAATATCCTGGCG < 41bp 0.882752262874056 0.615312467552355 0.8880707 0.08857912 prediction 0.534879590643401 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20639321 chr11:20639323 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_60485 0 0 0 0 1 SLC6A5 chr11:20639298 3'AG 20639298 Downstream 26bp
chr12 125621346 125621346 1 + C T LUAD 125621344 + 125621324 125621364 41 TTGGTTAAGAGGATCCGTGACGCCATCCGCATGGGCTTGTC TTGGTTAAGAGGATCCGTGACGTCATCCGCATGGGCTTGTC < 41bp 0.792850606522263 0.525414914420717 0.5495995 0.30782753 prediction 0.534871384203093 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125621344 chr12:125621346 nonsynonymous SNV 0.292 1 23 hm5C_associated_SNPs_60487 0 0 0 0 1 AACS chr12:125621410 5'GT 125621410 Upstream 65bp
chr5 74650486 74650486 1 + C T LGG 74650484 + 74650464 74650504 41 AGCTTTCAGAACCTTCTTCTCTCCAGTACCTACCTTACAGG AGCTTTCAGAACCTTCTTCTCTTCAGTACCTACCTTACAGG < 41bp 0.767435498350057 0.484043231337489 0.9581746 0.13633421 prediction 0.534870996700113 Functional Loss - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74650484 chr5:74650486 synonymous SNV . 0 23 hm5C_associated_SNPs_60488 0 0 1 0 1 HMGCR chr5:74650522 5'GT 74650522 Upstream 37bp
chr10 129839198 129839198 1 + G T COAD 129839196 + 129839176 129839216 41 GGTTTTAGCTTGCCGCTCGCCAGGGCTCTCAGGGGCAACGA GGTTTTAGCTTGCCGCTCGCCATGGCTCTCAGGGGCAACGA < 41bp 0.886215277947182 0.618782253983921 0.92510945 0.15079892 prediction 0.534866047926523 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129839196 chr10:129839198 nonsynonymous SNV 0.993 1 23 hm5C_associated_SNPs_60489 0 0 0 2 2 PTPRE chr10:129839139 3'AG 129839139 Downstream 60bp
chr10 129839198 129839198 1 + G T COAD 129839196 + 129839176 129839216 41 GGTTTTAGCTTGCCGCTCGCCAGGGCTCTCAGGGGCAACGA GGTTTTAGCTTGCCGCTCGCCATGGCTCTCAGGGGCAACGA < 41bp 0.886215277947182 0.618782253983921 0.92510945 0.15079892 prediction 0.534866047926523 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129839196 chr10:129839198 nonsynonymous SNV 0.993 1 23 hm5C_associated_SNPs_60489 0 0 0 2 2 PTPRE chr10:129839254 5'GT 129839254 Upstream 57bp
chr1 19584361 19584361 1 + C T BLCA 19584359 + 19584339 19584379 41 ATACACAGAAATGGACTACGCCCGAGCTGGTAACAAAGCAG ATACACAGAAATGGACTACGCCTGAGCTGGTAACAAAGCAG < 41bp 0.767421591394773 0.498529106173682 0.017429024 0.005596429 prediction 0.534843182789546 Functional Loss - MRTO4 ENSG00000053372 CDS Human protein_coding chr1:19584359 chr1:19584361 stopgain 0.209 1 23 hm5C_associated_SNPs_60490 0 0 1 0 1 MRTO4 chr1:19584327 3'AG 19584327 Downstream 35bp
chrX 129053189 129053189 1 + C T SKCM 129053187 + 129053167 129053207 41 AGCAGGAAATTTTCAACCTCCTCCATAAGAACAAGCAGCCA AGCAGGAAATTTTCAACCTCCTTCATAAGAACAAGCAGCCA < 41bp 0.767413843412806 0.469963723072419 0.95725644 0.08521113 prediction 0.534827686825611 Functional Loss - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129053187 chrX:129053189 synonymous SNV . 0 23 hm5C_associated_SNPs_60494 0 0 1 0 2 UTP14A chrX:129053151 3'AG 129053151 Downstream 39bp
chrX 129053189 129053189 1 + C T SKCM 129053187 + 129053167 129053207 41 AGCAGGAAATTTTCAACCTCCTCCATAAGAACAAGCAGCCA AGCAGGAAATTTTCAACCTCCTTCATAAGAACAAGCAGCCA < 41bp 0.767413843412806 0.469963723072419 0.95725644 0.08521113 prediction 0.534827686825611 Functional Loss - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129053187 chrX:129053189 synonymous SNV . 0 23 hm5C_associated_SNPs_60494 0 0 1 0 2 UTP14A chrX:129053270 5'GT 129053270 Upstream 82bp
chr6 26459792 26459792 1 + G C LUAD 26459791 + 26459771 26459811 41 TTACGCTGCCATCTGTCACCCGAGAAAAATGCTGAGGACAT TTACGCTGCCATCTGTCACCCCAGAAAAATGCTGAGGACAT < 41bp 0.841040261543868 0.573629143851775 0.8344355 0.35426292 prediction 0.534822235384186 Functional Loss - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26459791 chr6:26459792 nonsynonymous SNV 0.808 2 22 hm5C_associated_SNPs_60495 0 0 1 0 1 BTN2A1 chr6:26459709 3'AG 26459709 Downstream 84bp
chr17 34091340 34091340 1 + G C rs145033564 34091336 + 34091316 34091356 41 CTGGGCGGCCTAACAGCTCCCACCGACAGGTGCCTGCGCGC CTGGGCGGCCTAACAGCTCCCACCCACAGGTGCCTGCGCGC < 41bp 0.789619787628853 0.52221941905814 0.07347971 0.014951736 prediction 0.534800737141425 Functional Loss - C17orf50 ENSG00000154768 CDS Human other chr17:34091336 chr17:34091340 nonsynonymous SNV 0.491 2 25 hm5C_associated_SNPs_60497 0 0 0 0 1 C17orf50 chr17:34091344 5'GT 34091344 Upstream 5bp
chrX 49093593 49093593 1 + A T LUAD 49093589 + 49093569 49093609 41 GTGCAGACCTTGCGCGCCTTCACCACTGAGCTGGTTGTAGA GTGCAGACCTTGCGCGCCTTCACCTCTGAGCTGGTTGTAGA < 41bp 0.868896307319647 0.601498591147762 0.11902526 0.18752137 prediction 0.53479543234377 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49093589 chrX:49093593 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_60498 0 0 1 0 1 CCDC22 chrX:49093553 3'AG 49093553 Downstream 41bp
chr1 178489889 178489889 1 + G T LUSC 178489886 + 178489866 178489906 41 AGAGAACCACAGCTCAGGCCCAAGAAAATGGATGGAGCCAG AGAGAACCACAGCTCAGGCCCAATAAAATGGATGGAGCCAG < 41bp 0.767386613447396 0.378914111605155 0.3153736 0.17679045 prediction 0.534773226894792 Functional Loss - TEX35 ENSG00000240021 CDS Human protein_coding chr1:178489886 chr1:178489889 nonsynonymous SNV 0.033 1 24 hm5C_associated_SNPs_60500 0 0 0 0 1 TEX35 chr1:178489808 3'AG 178489808 Downstream 82bp
chr3 108549627 108549627 1 + G T GBM 108549624 + 108549604 108549644 41 ACTATGTGGAAAAGCAACGACAAGGTAAGACATTTTGACAA ACTATGTGGAAAAGCAACGACAATGTAAGACATTTTGACAA < 41bp 0.767385668286852 0.4096442131007 0.8458662 0.12176776 prediction 0.534771336573703 Functional Loss - TRAT1 ENSG00000163519 CDS Human protein_coding chr3:108549624 chr3:108549627 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_60501 0 0 0 0 1 TRAT1 chr3:108549627 5'GT 108549627 Upstream 1bp
chr11 94301961 94301961 1 + G T SARC 94301958 + 94301938 94301978 41 AATGGCTTCTTGGGAACAAGCAGGATCTCAACCAACGGTAA AATGGCTTCTTGGGAACAAGCAGTATCTCAACCAACGGTAA < 41bp 0.905722507922309 0.638343773822895 0.792873 0.26123634 prediction 0.534757468198829 Functional Loss - PIWIL4 ENSG00000134627 CDS Human protein_coding chr11:94301958 chr11:94301961 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_60503 0 0 0 0 2 PIWIL4 chr11:94301896 3'AG 94301896 Downstream 66bp
chr11 94301961 94301961 1 + G T SARC 94301958 + 94301938 94301978 41 AATGGCTTCTTGGGAACAAGCAGGATCTCAACCAACGGTAA AATGGCTTCTTGGGAACAAGCAGTATCTCAACCAACGGTAA < 41bp 0.905722507922309 0.638343773822895 0.792873 0.26123634 prediction 0.534757468198829 Functional Loss - PIWIL4 ENSG00000134627 CDS Human protein_coding chr11:94301958 chr11:94301961 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_60503 0 0 0 0 2 PIWIL4 chr11:94301974 5'GT 94301974 Upstream 14bp
chr19 22785676 22785676 1 + G T COAD 22785674 + 22785654 22785694 41 AGCACATCCACAGGCTAGCCCAGGACAAGGAGGAGATGAAG AGCACATCCACAGGCTAGCCCATGACAAGGAGGAGATGAAG < 41bp 0.862932529484566 0.59555833392304 0.7786051 0.16473398 prediction 0.534748391123051 Functional Loss - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human other chr19:22785674 chr19:22785676 . . 0 23 hm5C_associated_SNPs_60504 0 0 0 0 1 GOLGA2P9 chr19:22785590 3'AG 22785590 Downstream 87bp
chr7 31126150 31126150 1 + G T UCEC 31126147 + 31126127 31126167 41 TACTGGTACACCATCATTGGCTGGGGTAGGTTCCTGGCTGT TACTGGTACACCATCATTGGCTGTGGTAGGTTCCTGGCTGT < 41bp 0.767359219710419 0.370309868573709 0.8986772 0.34483927 prediction 0.534718439420839 Functional Loss - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31126147 chr7:31126150 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_60507 0 0 0 0 1 ADCYAP1R1 chr7:31126151 5'GT 31126151 Upstream 2bp
chr16 68714935 68714935 1 + C T STAD 68714933 + 68714913 68714953 41 GATGGGGACGGCTCCACCACCACGGCAGTGGCAGTAGTGGA GATGGGGACGGCTCCACCACCATGGCAGTGGCAGTAGTGGA < 41bp 0.768237213460041 0.500889886835237 0.44787627 0.31818596 prediction 0.534694653249606 Functional Loss - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68714933 chr16:68714935 nonsynonymous SNV 0.270 4 23 hm5C_associated_SNPs_60509 0 0 0 0 2 CDH3 chr16:68714871 3'AG 68714871 Downstream 65bp
chr16 68714935 68714935 1 + C T STAD 68714933 + 68714913 68714953 41 GATGGGGACGGCTCCACCACCACGGCAGTGGCAGTAGTGGA GATGGGGACGGCTCCACCACCATGGCAGTGGCAGTAGTGGA < 41bp 0.768237213460041 0.500889886835237 0.44787627 0.31818596 prediction 0.534694653249606 Functional Loss - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68714933 chr16:68714935 nonsynonymous SNV 0.270 4 23 hm5C_associated_SNPs_60509 0 0 0 0 2 CDH3 chr16:68714999 5'GT 68714999 Upstream 65bp
chr2 179400468 179400468 1 + G T PRAD 179400466 + 179400446 179400486 41 TCCTTTCTGCCAGGTGATCACAGGATCTGGTTTGCCACTGA TCCTTTCTGCCAGGTGATCACATGATCTGGTTTGCCACTGA < 41bp 0.824848418549709 0.557503039766077 0.8889893 0.40682948 prediction 0.534690757567264 Functional Loss - TTN ENSG00000155657 CDS Human protein_coding chr2:179400466 chr2:179400468 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_60510 0 0 0 0 2 TTN chr2:179400459 3'AG 179400459 Downstream 10bp
chr2 179400468 179400468 1 + G T PRAD 179400466 + 179400446 179400486 41 TCCTTTCTGCCAGGTGATCACAGGATCTGGTTTGCCACTGA TCCTTTCTGCCAGGTGATCACATGATCTGGTTTGCCACTGA < 41bp 0.824848418549709 0.557503039766077 0.8889893 0.40682948 prediction 0.534690757567264 Functional Loss - TTN ENSG00000155657 CDS Human protein_coding chr2:179400466 chr2:179400468 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_60510 0 0 0 0 2 TTN chr2:179400555 5'GT 179400555 Upstream 88bp
chr16 30016612 30016612 1 + G T UCEC 30016609 + 30016589 30016629 41 CCCTGGCCGGGGTTCTGGGGCTGGGGTCGGGACAACCCTGA CCCTGGCCGGGGTTCTGGGGCTGTGGTCGGGACAACCCTGA < 41bp 0.87375562934492 0.606414171550689 0.9083338 0.8416113 prediction 0.534682915588461 Functional Loss - INO80E ENSG00000169592 CDS Human protein_coding chr16:30016609 chr16:30016612 nonsynonymous SNV 0.021 0 24 hm5C_associated_SNPs_60511 0 0 1 1 1 INO80E chr16:30016542 3'AG 30016542 Downstream 71bp
chr15 63363340 63363340 1 + A T LUAD 63363336 + 63363316 63363356 41 ACCTTAGTATGCATCAGATGCTGGATCAGACTTTACTGGAG ACCTTAGTATGCATCAGATGCTGGTTCAGACTTTACTGGAG < 41bp 0.817039454860504 0.549713341690598 0.2453753 0.12837178 prediction 0.534652226339813 Functional Loss - TPM1 ENSG00000140416 CDS Human protein_coding chr15:63363336 chr15:63363340 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_60512 0 0 1 2 1 TPM1 chr15:63363289 3'AG 63363289 Downstream 52bp
chr20 48568649 48568649 1 + G T LIHC 48568646 + 48568626 48568666 41 ATGAAGAGGACATGATGAATCAGGTGTTGCAGCGCTCCATC ATGAAGAGGACATGATGAATCAGTTGTTGCAGCGCTCCATC < 41bp 0.905049053766264 0.637731338278459 0.92162836 0.3276084 prediction 0.534635430975611 Functional Loss - RNF114 ENSG00000124226 CDS Human protein_coding chr20:48568646 chr20:48568649 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_60514 0 0 1 0 1 RNF114 chr20:48568613 3'AG 48568613 Downstream 37bp
chr1 1455631 1455631 1 + G C STAD 1455627 + 1455607 1455647 41 CGGGAGAATGCAGACATCATCCGCGAGCAGATCCGCCTGAA CGGGAGAATGCAGACATCATCCGCCAGCAGATCCGCCTGAA < 41bp 0.78121321846289 0.513900369478269 0.40916935 0.14811027 prediction 0.534625697969242 Functional Loss - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1455627 chr1:1455631 nonsynonymous SNV 0.322 4 25 hm5C_associated_SNPs_60516 0 0 1 0 1 ATAD3A chr1:1455686 5'GT 1455686 Upstream 56bp
chr12 72338118 72338118 1 + G C BRCA 72338114 + 72338094 72338134 41 TCATATTGAATCCAGGAAATCTCGGCGAAGAAGTTCTGAGG TCATATTGAATCCAGGAAATCTCGCCGAAGAAGTTCTGAGG < 41bp 0.772670996166844 0.505369819680561 0.53301597 0.19964758 prediction 0.534602352972567 Functional Loss - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72338114 chr12:72338118 synonymous SNV . 0 25 hm5C_associated_SNPs_60518 0 0 0 0 1 TPH2 chr12:72338074 3'AG 72338074 Downstream 45bp
chr3 195955067 195955067 1 + G T HNSC 195955065 + 195955045 195955085 41 AGGAGGCAGTGCTGAGGACGCTGAGGGACACCCCGATGATG AGGAGGCAGTGCTGAGGACGCTTAGGGACACCCCGATGATG < 41bp 0.879450265856517 0.612150309071845 0.5275244 0.2530775 prediction 0.534599913569345 Functional Loss - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195955065 chr3:195955067 synonymous SNV . 0 23 hm5C_associated_SNPs_60519 0 0 1 0 2 SLC51A chr3:195954986 3'AG 195954986 Downstream 82bp
chr3 195955067 195955067 1 + G T HNSC 195955065 + 195955045 195955085 41 AGGAGGCAGTGCTGAGGACGCTGAGGGACACCCCGATGATG AGGAGGCAGTGCTGAGGACGCTTAGGGACACCCCGATGATG < 41bp 0.879450265856517 0.612150309071845 0.5275244 0.2530775 prediction 0.534599913569345 Functional Loss - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195955065 chr3:195955067 synonymous SNV . 0 23 hm5C_associated_SNPs_60519 0 0 1 0 2 SLC51A chr3:195955144 5'GT 195955144 Upstream 78bp
chr5 64859323 64859323 1 + G T UCEC 64859320 + 64859300 64859340 41 CCTGTGGAGGCAACACTGGCCAAGAAGAGGAAAGGTAGCTG CCTGTGGAGGCAACACTGGCCAATAAGAGGAAAGGTAGCTG < 41bp 0.890627007705508 0.623339032341403 0.09584841 0.14204302 prediction 0.534575950728211 Functional Loss - PPWD1 ENSG00000113593 CDS Human protein_coding chr5:64859320 chr5:64859323 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_60520 0 0 1 0 1 PPWD1 chr5:64859333 5'GT 64859333 Upstream 11bp
chr3 33419603 33419603 1 + C T UCEC 33419601 + 33419581 33419621 41 GTGGACTCTTCCAGAATTGCCACGAATTGGAGAAGATGGAT GTGGACTCTTCCAGAATTGCCATGAATTGGAGAAGATGGAT < 41bp 0.767283809089705 0.490509231746135 0.12062284 0.16249108 prediction 0.53456761817941 Functional Loss - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33419601 chr3:33419603 synonymous SNV . 0 23 hm5C_associated_SNPs_60523 0 0 0 0 2 FBXL2 chr3:33419595 3'AG 33419595 Downstream 9bp
chr3 33419603 33419603 1 + C T UCEC 33419601 + 33419581 33419621 41 GTGGACTCTTCCAGAATTGCCACGAATTGGAGAAGATGGAT GTGGACTCTTCCAGAATTGCCATGAATTGGAGAAGATGGAT < 41bp 0.767283809089705 0.490509231746135 0.12062284 0.16249108 prediction 0.53456761817941 Functional Loss - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33419601 chr3:33419603 synonymous SNV . 0 23 hm5C_associated_SNPs_60523 0 0 0 0 2 FBXL2 chr3:33419639 5'GT 33419639 Upstream 37bp
chr17 37900352 37900352 1 + G C BLCA 37900348 + 37900328 37900368 41 CCTGAATGCTGGCAGCTTTCCTGAGATCCAGGGCTTTCTGC CCTGAATGCTGGCAGCTTTCCTGACATCCAGGGCTTTCTGC < 41bp 0.81869494200497 0.551418315319409 0.89311826 0.41337886 prediction 0.534553253371122 Functional Loss - GRB7 ENSG00000141738 CDS Human protein_coding chr17:37900348 chr17:37900352 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_60524 0 0 1 0 1 GRB7 chr17:37900323 3'AG 37900323 Downstream 30bp
chr5 176732934 176732934 1 + C T SKCM 176732932 + 176732912 176732952 41 ACAGTGGCTGGACTGAAATCCGCCGGGAAGCCTGGGTCTCC ACAGTGGCTGGACTGAAATCCGTCGGGAAGCCTGGGTCTCC < 41bp 0.775093417811913 0.507823634846704 0.54313874 0.42581674 prediction 0.534539565930418 Functional Loss - PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176732932 chr5:176732934 synonymous SNV . 0 23 hm5C_associated_SNPs_60526 0 0 1 0 2 PRELID1 chr5:176732872 3'AG 176732872 Downstream 63bp
chr5 176732934 176732934 1 + C T SKCM 176732932 + 176732912 176732952 41 ACAGTGGCTGGACTGAAATCCGCCGGGAAGCCTGGGTCTCC ACAGTGGCTGGACTGAAATCCGTCGGGAAGCCTGGGTCTCC < 41bp 0.775093417811913 0.507823634846704 0.54313874 0.42581674 prediction 0.534539565930418 Functional Loss - PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176732932 chr5:176732934 synonymous SNV . 0 23 hm5C_associated_SNPs_60526 0 0 1 0 2 PRELID1 chr5:176732985 5'GT 176732985 Upstream 52bp
chr20 42694707 42694707 1 + A T LUSC 42694703 + 42694683 42694723 41 TCCTGCCCACCCCCATGGCACTCCAGGTGCAGCTGGCGATG TCCTGCCCACCCCCATGGCACTCCTGGTGCAGCTGGCGATG < 41bp 0.767262833127036 0.42047655057367 0.92060584 0.06667295 prediction 0.534525666254073 Functional Loss - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42694703 chr20:42694707 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_60528 0 0 0 0 1 TOX2 chr20:42694747 5'GT 42694747 Upstream 41bp
chr17 52991168 52991168 1 + C T LUSC 52991166 + 52991146 52991186 41 GCGAAGTCAAAGAAGTATACCTCGACCTGGTTAAGAAAGGC GCGAAGTCAAAGAAGTATACCTTGACCTGGTTAAGAAAGGC < 41bp 0.807357265460563 0.540103952635993 0.32240212 0.14735347 prediction 0.53450662564914 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52991166 chr17:52991168 synonymous SNV . 0 23 hm5C_associated_SNPs_60529 0 0 1 2 1 TOM1L1 chr17:52991234 5'GT 52991234 Upstream 67bp
chr4 52938224 52938224 1 + G T SARC 52938222 + 52938202 52938242 41 CACTCAAGCAGAATGCAGACCAGCAGGACACAGAAGCCATG CACTCAAGCAGAATGCAGACCATCAGGACACAGAAGCCATG < 41bp 0.767251285262323 0.422528770531429 0.2080639 0.045050085 prediction 0.534502570524645 Functional Loss - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52938222 chr4:52938224 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_60530 0 0 0 3 1 SPATA18 chr4:52938322 5'GT 52938322 Upstream 99bp
chr4 53731537 53731537 1 + G T GBM 53731535 + 53731515 53731555 41 GCCTGAGCTGCAGTGAACAGCTGAATAGGTGCATTCGCTGG GCCTGAGCTGCAGTGAACAGCTTAATAGGTGCATTCGCTGG < 41bp 0.839541207561732 0.572290645428987 0.17126995 0.071956664 prediction 0.534501124265491 Functional Loss - RASL11B ENSG00000128045 CDS Human protein_coding chr4:53731535 chr4:53731537 synonymous SNV . 0 23 hm5C_associated_SNPs_60531 0 0 0 0 1 RASL11B chr4:53731502 3'AG 53731502 Downstream 36bp
chr7 75513130 75513130 1 + G T UCEC 75513127 + 75513107 75513147 41 ATCCGTGTTCAAGTACGTCTCAGGGTCTTCAGCCGAGAGGA ATCCGTGTTCAAGTACGTCTCAGTGTCTTCAGCCGAGAGGA < 41bp 0.915919627547295 0.648670348688571 0.9080535 0.17047334 prediction 0.534498557717446 Functional Loss - RHBDD2 ENSG00000005486 CDS Human protein_coding chr7:75513127 chr7:75513130 nonsynonymous SNV 0.598 3 24 hm5C_associated_SNPs_60532 0 0 1 0 1 RHBDD2 chr7:75513166 5'GT 75513166 Upstream 37bp
chr16 24921747 24921747 1 + A T LUSC 24921743 + 24921723 24921763 41 GGGATGCCAGAGGCCAGCAGCAGCAGCAGCGTCCAGTTCGA GGGATGCCAGAGGCCAGCAGCAGCTGCAGCGTCCAGTTCGA < 41bp 0.7672479827304 0.452948840934957 0.6725516 0.70565933 prediction 0.534495965460799 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24921743 chr16:24921747 nonsynonymous SNV 0.172 0 25 hm5C_associated_SNPs_60533 0 0 0 0 1 SLC5A11 chr16:24921798 5'GT 24921798 Upstream 52bp
chr12 7293876 7293876 1 + C T BLCA 7293874 + 7293854 7293894 41 GGCACCACTACGCTCTGAACCTCGAGTTCCCCACAGTCACA GGCACCACTACGCTCTGAACCTTGAGTTCCCCACAGTCACA < 41bp 0.802140622920762 0.534895234934073 0.1628688 0.054174185 prediction 0.534490775973377 Functional Loss - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7293874 chr12:7293876 synonymous SNV . 0 23 hm5C_associated_SNPs_60534 0 0 0 0 1 CLSTN3 chr12:7293838 3'AG 7293838 Downstream 39bp
chr9 35845993 35845993 1 + G C LUSC 35845992 + 35845972 35846012 41 AGCTCCGTGCGCCAGGAAAACGTGACGGTGTTTGGATGCTT AGCTCCGTGCGCCAGGAAAACCTGACGGTGTTTGGATGCTT < 41bp 0.767239470626752 0.448924942888451 0.18178183 0.084703505 prediction 0.534478941253504 Functional Loss - TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35845992 chr9:35845993 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_60535 0 0 1 0 2 TMEM8B chr9:35845972 3'AG 35845972 Downstream 22bp
chr9 35845993 35845993 1 + G C LUSC 35845992 + 35845972 35846012 41 AGCTCCGTGCGCCAGGAAAACGTGACGGTGTTTGGATGCTT AGCTCCGTGCGCCAGGAAAACCTGACGGTGTTTGGATGCTT < 41bp 0.767239470626752 0.448924942888451 0.18178183 0.084703505 prediction 0.534478941253504 Functional Loss - TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35845992 chr9:35845993 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_60535 0 0 1 0 2 TMEM8B chr9:35846065 5'GT 35846065 Upstream 73bp
chr2 88825981 88825981 1 + G T UCEC 88825979 + 88825959 88825999 41 ATGGTCGACTATCAGCCCTACAGGAAGCACAAATACTCCAG ATGGTCGACTATCAGCCCTACATGAAGCACAAATACTCCAG < 41bp 0.879458471522685 0.61222176989344 0.59651023 0.3032871 prediction 0.53447340325849 Functional Loss - TEX37 ENSG00000172073 CDS Human protein_coding chr2:88825979 chr2:88825981 nonsynonymous SNV 0.248 1 23 hm5C_associated_SNPs_60536 0 0 0 0 2 TEX37 chr2:88825923 3'AG 88825923 Downstream 59bp
chr2 88825981 88825981 1 + G T UCEC 88825979 + 88825959 88825999 41 ATGGTCGACTATCAGCCCTACAGGAAGCACAAATACTCCAG ATGGTCGACTATCAGCCCTACATGAAGCACAAATACTCCAG < 41bp 0.879458471522685 0.61222176989344 0.59651023 0.3032871 prediction 0.53447340325849 Functional Loss - TEX37 ENSG00000172073 CDS Human protein_coding chr2:88825979 chr2:88825981 nonsynonymous SNV 0.248 1 23 hm5C_associated_SNPs_60536 0 0 0 0 2 TEX37 chr2:88826015 5'GT 88826015 Upstream 35bp
chr22 29176964 29176964 1 + G T BLCA 29176962 + 29176942 29176982 41 AGTAAGAAAGAAAAGGATAACTGAAGCAGAGCTCTGTGCTG AGTAAGAAAGAAAAGGATAACTTAAGCAGAGCTCTGTGCTG < 41bp 0.767230330467784 0.450059131819956 0.26153284 0.12541276 prediction 0.534460660935568 Functional Loss - CCDC117 ENSG00000159873 CDS Human protein_coding chr22:29176962 chr22:29176964 stopgain 0.999 0 23 hm5C_associated_SNPs_60538 0 0 1 0 1 CCDC117 chr22:29176936 3'AG 29176936 Downstream 29bp
chr11 6281223 6281223 1 + G C PRAD 6281219 + 6281199 6281239 41 GACCCGGGCCGGGGGCTTCCCTGTGCCGCCCGGGGGCGCCT GACCCGGGCCGGGGGCTTCCCTGTCCCGCCCGGGGGCGCCT < 41bp 0.798734299640925 0.531506378480664 0.29072034 0.21675587 prediction 0.534455842320522 Functional Loss - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6281219 chr11:6281223 nonsynonymous SNV 0.973 2 25 hm5C_associated_SNPs_60540 0 0 0 0 1 CCKBR chr11:6281309 5'GT 6281309 Upstream 87bp
chr1 93676478 93676478 1 + A C rs76148185 93676474 + 93676454 93676494 41 GGCAAATAAATTGGTGATTTCGGAATTGAGGTACAATTTTC GGCAAATAAATTGGTGATTTCGGACTTGAGGTACAATTTTC < 41bp 0.767218344502036 0.382627710876819 0.6789296 0.5390468 prediction 0.534436689004071 Functional Loss - CCDC18 ENSG00000122483 CDS Human protein_coding chr1:93676474 chr1:93676478 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_60541 0 0 0 0 1 CCDC18 chr1:93676483 5'GT 93676483 Upstream 6bp
chr2 29225458 29225458 1 + C T rs183676260 29225456 + 29225436 29225476 41 TCCCCTGCACAGCACCATCCCCCGAGCCACCTCTCAGAGGC TCCCCTGCACAGCACCATCCCCTGAGCCACCTCTCAGAGGC < 41bp 0.771214760791304 0.50401065640847 0.050870985 0.071032405 prediction 0.534408208765668 Functional Loss - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29225456 chr2:29225458 stopgain 0.018 0 23 hm5C_associated_SNPs_60543 0 0 0 0 1 TOGARAM2 chr2:29225402 3'AG 29225402 Downstream 57bp
chr16 3085406 3085406 1 + A T LIHC 3085402 + 3085382 3085422 41 CCCAGGAATGAGTCCCGCCGCTCCAGCACAAAGGGGAAGAA CCCAGGAATGAGTCCCGCCGCTCCTGCACAAAGGGGAAGAA < 41bp 0.858461415564655 0.591263519843342 0.2785796 0.078830004 prediction 0.534395791442625 Functional Loss - BICDL2 ENSG00000162069 CDS Human protein_coding chr16:3085402 chr16:3085406 nonsynonymous SNV 0.993 3 25 hm5C_associated_SNPs_60544 0 0 0 0 1 BICDL2 chr16:3085339 3'AG 3085339 Downstream 68bp
chr1 114440547 114440547 1 + C T UCEC 114440545 + 114440525 114440565 41 AGGACACAACCAAACCAGGTCTCGGAAAGTCTGCACCACCA AGGACACAACCAAACCAGGTCTTGGAAAGTCTGCACCACCA < 41bp 0.789804078136353 0.522606575111811 0.12999305 0.07927638 prediction 0.534395006049086 Functional Loss - AP4B1 ENSG00000134262 CDS Human protein_coding chr1:114440545 chr1:114440547 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_60546 0 0 0 0 2 AP4B1 chr1:114440490 3'AG 114440490 Downstream 58bp
chr1 114440547 114440547 1 + C T UCEC 114440545 + 114440525 114440565 41 AGGACACAACCAAACCAGGTCTCGGAAAGTCTGCACCACCA AGGACACAACCAAACCAGGTCTTGGAAAGTCTGCACCACCA < 41bp 0.789804078136353 0.522606575111811 0.12999305 0.07927638 prediction 0.534395006049086 Functional Loss - AP4B1 ENSG00000134262 CDS Human antisense chr1:114440545 chr1:114440547 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_60546 0 0 0 0 2 AP4B1-AS1 chr1:114440611 5'GT 114440611 Upstream 65bp
chr11 125617652 125617652 1 + C T COAD 125617650 + 125617630 125617670 41 CAGTTCCCAGGAGAAAAGTGCTCCAGAGGAAGAGGAATATG CAGTTCCCAGGAGAAAAGTGCTTCAGAGGAAGAGGAATATG < 41bp 0.781691621298673 0.514524583812618 0.7785939 0.29343835 prediction 0.534334074972109 Functional Loss - PATE1 ENSG00000171053 CDS Human protein_coding chr11:125617650 chr11:125617652 nonsynonymous SNV 0.693 1 23 hm5C_associated_SNPs_60549 0 0 0 0 2 PATE1 chr11:125617595 3'AG 125617595 Downstream 58bp
chr11 125617652 125617652 1 + C T COAD 125617650 + 125617630 125617670 41 CAGTTCCCAGGAGAAAAGTGCTCCAGAGGAAGAGGAATATG CAGTTCCCAGGAGAAAAGTGCTTCAGAGGAAGAGGAATATG < 41bp 0.781691621298673 0.514524583812618 0.7785939 0.29343835 prediction 0.534334074972109 Functional Loss - PATE1 ENSG00000171053 CDS Human protein_coding chr11:125617650 chr11:125617652 nonsynonymous SNV 0.693 1 23 hm5C_associated_SNPs_60549 0 0 0 0 2 PATE1 chr11:125617717 5'GT 125617717 Upstream 66bp
chr10 85899347 85899347 1 + G T rs1136944 85899345 + 85899325 85899365 41 GAGGCGAAGGTGACCGGGGACCGAGGTACTGCTCCGGCTGG GAGGCGAAGGTGACCGGGGACCTAGGTACTGCTCCGGCTGG < 41bp 0.772455468200231 0.505288467166772 0.8492119 0.687639 prediction 0.534334002066917 Functional Loss - GHITM ENSG00000271933 ncRNA_exonic Human antisense chr10:85899345 chr10:85899347 . . 0 23 hm5C_associated_SNPs_60550 0 0 1 0 1 GHITM chr10:85899349 5'GT 85899349 Upstream 3bp
chr4 38945103 38945103 1 + G T UCEC 38945101 + 38945081 38945121 41 GCAACAGTACAACGTACATACAGGATGCCTTCCAGCTGCTG GCAACAGTACAACGTACATACATGATGCCTTCCAGCTGCTG < 41bp 0.85367178672166 0.586506994587634 0.90696144 0.29324633 prediction 0.534329584268052 Functional Loss - FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38945101 chr4:38945103 nonsynonymous SNV 0.693 2 23 hm5C_associated_SNPs_60551 0 0 0 0 1 FAM114A1 chr4:38945077 3'AG 38945077 Downstream 27bp
chr11 118401410 118401410 1 + G C rs552582178 118401409 + 118401389 118401429 41 CGCGCGGTGGAGCTGAGCGGCGGCCGGGGCCGCGCCGCCCG CGCGCGGTGGAGCTGAGCGGCCGCCGGGGCCGCGCCGCCCG < 41bp 0.767155381380037 0.453299955108129 0.8944114 0.7376756 prediction 0.534310762760075 Functional Loss - TTC36 ENSG00000172425 CDS Human protein_coding chr11:118401409 chr11:118401410 nonsynonymous SNV 0.852 2 22 hm5C_associated_SNPs_60552 0 0 0 0 1 TTC36 chr11:118401369 3'AG 118401369 Downstream 42bp
chr8 106811145 106811145 1 + A C OV 106811141 + 106811121 106811161 41 CACCAAGAGCTTTTCAAATGCTCGAGCTCTAGAAATGCACC CACCAAGAGCTTTTCAAATGCTCGCGCTCTAGAAATGCACC < 41bp 0.767142948026832 0.359803364131453 0.11445513 0.034094453 prediction 0.534285896053663 Functional Loss - ZFPM2 ENSG00000169946 CDS Human protein_coding chr8:106811141 chr8:106811145 synonymous SNV . 0 25 hm5C_associated_SNPs_60556 0 0 0 0 1 ZFPM2 chr8:106811176 5'GT 106811176 Upstream 32bp
chr8 106811143 106811143 1 + C T UCEC 106811141 + 106811121 106811161 41 CACCAAGAGCTTTTCAAATGCTCGAGCTCTAGAAATGCACC CACCAAGAGCTTTTCAAATGCTTGAGCTCTAGAAATGCACC < 41bp 0.767142948026832 0.491291855142363 0.11445513 0.0639447 prediction 0.534285896053663 Functional Loss - ZFPM2 ENSG00000169946 CDS Human protein_coding chr8:106811141 chr8:106811143 stopgain 0.998 1 23 hm5C_associated_SNPs_60557 0 0 0 0 1 ZFPM2 chr8:106811176 5'GT 106811176 Upstream 34bp
chr1 1117125 1117125 1 + G T GBM 1117122 + 1117102 1117142 41 TCTGTCCCCTGGGCTGCAGGCTGGAAAAGGACGCAGCAGCG TCTGTCCCCTGGGCTGCAGGCTGTAAAAGGACGCAGCAGCG < 41bp 0.904233996023068 0.637123237105322 0.82878995 0.2885224 prediction 0.534221517835492 Functional Loss - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1117122 chr1:1117125 stopgain 0.002 0 24 hm5C_associated_SNPs_60563 0 0 0 0 2 TTLL10 chr1:1117121 3'AG 1117121 Downstream 5bp
chr1 1117125 1117125 1 + G T GBM 1117122 + 1117102 1117142 41 TCTGTCCCCTGGGCTGCAGGCTGGAAAAGGACGCAGCAGCG TCTGTCCCCTGGGCTGCAGGCTGTAAAAGGACGCAGCAGCG < 41bp 0.904233996023068 0.637123237105322 0.82878995 0.2885224 prediction 0.534221517835492 Functional Loss - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1117122 chr1:1117125 stopgain 0.002 0 24 hm5C_associated_SNPs_60563 0 0 0 0 2 TTLL10 chr1:1117195 5'GT 1117195 Upstream 71bp
chr16 2511793 2511793 1 + G T UCEC 2511791 + 2511771 2511811 41 CATTCAGGAAAGCAGCTTCCCAGAACTCGAGGTGAGGCTGA CATTCAGGAAAGCAGCTTCCCATAACTCGAGGTGAGGCTGA < 41bp 0.767106435571396 0.464513788348644 0.19559726 0.04759884 prediction 0.534212871142793 Functional Loss - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2511791 chr16:2511793 nonsynonymous SNV 0.023 2 23 hm5C_associated_SNPs_60564 0 0 1 0 2 C16orf59 chr16:2511748 3'AG 2511748 Downstream 46bp
chr16 2511793 2511793 1 + G T UCEC 2511791 + 2511771 2511811 41 CATTCAGGAAAGCAGCTTCCCAGAACTCGAGGTGAGGCTGA CATTCAGGAAAGCAGCTTCCCATAACTCGAGGTGAGGCTGA < 41bp 0.767106435571396 0.464513788348644 0.19559726 0.04759884 prediction 0.534212871142793 Functional Loss - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2511791 chr16:2511793 nonsynonymous SNV 0.023 2 23 hm5C_associated_SNPs_60564 0 0 1 0 2 C16orf59 chr16:2511801 5'GT 2511801 Upstream 9bp
chr2 15753381 15753381 1 + G T LUAD 15753379 + 15753359 15753399 41 TAATTGGAGGTGTTGCAGCCCGGGATCAGCTCTCTGTTTTG TAATTGGAGGTGTTGCAGCCCGTGATCAGCTCTCTGTTTTG < 41bp 0.856894985298721 0.589806449948135 0.88954395 0.32965797 prediction 0.534177070701171 Functional Loss - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15753379 chr2:15753381 synonymous SNV . 0 23 hm5C_associated_SNPs_60567 0 0 1 0 2 DDX1 chr2:15753348 3'AG 15753348 Downstream 34bp
chr2 15753381 15753381 1 + G T LUAD 15753379 + 15753359 15753399 41 TAATTGGAGGTGTTGCAGCCCGGGATCAGCTCTCTGTTTTG TAATTGGAGGTGTTGCAGCCCGTGATCAGCTCTCTGTTTTG < 41bp 0.856894985298721 0.589806449948135 0.88954395 0.32965797 prediction 0.534177070701171 Functional Loss - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15753379 chr2:15753381 synonymous SNV . 0 23 hm5C_associated_SNPs_60567 0 0 1 0 2 DDX1 chr2:15753408 5'GT 15753408 Upstream 28bp
chr1 186909157 186909157 1 + G T LIHC 186909155 + 186909135 186909175 41 TTTGAAGGAAAAAGTTAATACTGCACAATGCCCTTTACCTC TTTGAAGGAAAAAGTTAATACTTCACAATGCCCTTTACCTC < 41bp 0.767086817291596 0.451346676229008 0.1806592 0.2893808 prediction 0.534173634583192 Functional Loss - PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186909155 chr1:186909157 nonsynonymous SNV 0.005 2 23 hm5C_associated_SNPs_60568 0 0 0 0 2 PLA2G4A chr1:186909112 3'AG 186909112 Downstream 46bp
chr1 186909157 186909157 1 + G T LIHC 186909155 + 186909135 186909175 41 TTTGAAGGAAAAAGTTAATACTGCACAATGCCCTTTACCTC TTTGAAGGAAAAAGTTAATACTTCACAATGCCCTTTACCTC < 41bp 0.767086817291596 0.451346676229008 0.1806592 0.2893808 prediction 0.534173634583192 Functional Loss - PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186909155 chr1:186909157 nonsynonymous SNV 0.005 2 23 hm5C_associated_SNPs_60568 0 0 0 0 2 PLA2G4A chr1:186909226 5'GT 186909226 Upstream 70bp
chrX 70316525 70316525 1 + G T UCEC 70316522 + 70316502 70316542 41 AACCAGCCGTCCGAGCCGCCCGAGGTGGAGCCAGATCTGGG AACCAGCCGTCCGAGCCGCCCGATGTGGAGCCAGATCTGGG < 41bp 0.767073616050341 0.370081725512957 0.90246665 0.6265917 prediction 0.534147232100681 Functional Loss - FOXO4 ENSG00000184481 CDS Human protein_coding chrX:70316522 chrX:70316525 nonsynonymous SNV 0.955 1 24 hm5C_associated_SNPs_60570 0 0 0 0 1 FOXO4 chrX:70316549 5'GT 70316549 Upstream 25bp
chr6 46721632 46721632 1 + C T UCEC 46721630 + 46721610 46721650 41 CCCTGACTTCTTTGGAGACACACCGAAGAGGATTGCACAGA CCCTGACTTCTTTGGAGACACATCGAAGAGGATTGCACAGA < 41bp 0.77072894343418 0.503659026958635 0.042901665 0.1287443 prediction 0.534139832951089 Functional Loss - ANKRD66 ENSG00000230062 CDS Human protein_coding chr6:46721630 chr6:46721632 nonsynonymous SNV 0.946 3 23 hm5C_associated_SNPs_60572 0 0 0 0 1 ANKRD66 chr6:46721687 5'GT 46721687 Upstream 56bp
chr11 93913381 93913381 1 + G T UCEC 93913379 + 93913359 93913399 41 TGGCAAAACTCCCATGTCTGCAGAGATGAGAGAGGAGCAGG TGGCAAAACTCCCATGTCTGCATAGATGAGAGAGGAGCAGG < 41bp 0.767065726793334 0.42419104380447 0.79819596 0.38428134 prediction 0.534131453586668 Functional Loss - PANX1 ENSG00000110218 CDS Human protein_coding chr11:93913379 chr11:93913381 stopgain 0.001 0 23 hm5C_associated_SNPs_60574 0 0 1 0 1 PANX1 chr11:93913423 5'GT 93913423 Upstream 43bp
chr6 24780944 24780944 1 + A C rs2307300 24780940 + 24780920 24780960 41 GATGATTCAGCCTTCTGCATCTGGATCTCTTGTTGGAAGAG GATGATTCAGCCTTCTGCATCTGGCTCTCTTGTTGGAAGAG < 41bp 0.767061457194671 0.353608143157125 0.50623864 0.39207214 prediction 0.534122914389342 Functional Loss - GMNN ENSG00000112312 CDS Human protein_coding chr6:24780940 chr6:24780944 synonymous SNV . 0 25 hm5C_associated_SNPs_60575 0 0 1 0 2 GMNN chr6:24780891 3'AG 24780891 Downstream 54bp
chr6 24780944 24780944 1 + A C rs2307300 24780940 + 24780920 24780960 41 GATGATTCAGCCTTCTGCATCTGGATCTCTTGTTGGAAGAG GATGATTCAGCCTTCTGCATCTGGCTCTCTTGTTGGAAGAG < 41bp 0.767061457194671 0.353608143157125 0.50623864 0.39207214 prediction 0.534122914389342 Functional Loss - GMNN ENSG00000112312 CDS Human protein_coding chr6:24780940 chr6:24780944 synonymous SNV . 0 25 hm5C_associated_SNPs_60575 0 0 1 0 2 GMNN chr6:24780968 5'GT 24780968 Upstream 25bp
chr9 100071830 100071830 1 + G T COAD 100071828 + 100071808 100071848 41 AGGTGATGTCTCCCCGACAGCAGAAGTGGATGCACAGCCTC AGGTGATGTCTCCCCGACAGCATAAGTGGATGCACAGCCTC < 41bp 0.76705824868691 0.424270397101141 0.5141622 0.15149799 prediction 0.534116497373821 Functional Loss - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100071828 chr9:100071830 nonsynonymous SNV 0.620 0 23 hm5C_associated_SNPs_60576 0 0 0 1 1 CCDC180 chr9:100071886 5'GT 100071886 Upstream 57bp
chr17 4389556 4389556 1 + G T UCEC 4389554 + 4389534 4389574 41 GCCCAGATGCCGGGGGACGGCAGAGGCACTTCAGATCACGG GCCCAGATGCCGGGGGACGGCATAGGCACTTCAGATCACGG < 41bp 0.767040962516096 0.404833123255884 0.89757633 0.6197191 prediction 0.534081925032191 Functional Loss - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4389554 chr17:4389556 stopgain 0.990 0 23 hm5C_associated_SNPs_60577 0 0 0 0 2 SPNS3 chr17:4389523 3'AG 4389523 Downstream 34bp
chr17 4389556 4389556 1 + G T UCEC 4389554 + 4389534 4389574 41 GCCCAGATGCCGGGGGACGGCAGAGGCACTTCAGATCACGG GCCCAGATGCCGGGGGACGGCATAGGCACTTCAGATCACGG < 41bp 0.767040962516096 0.404833123255884 0.89757633 0.6197191 prediction 0.534081925032191 Functional Loss - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4389554 chr17:4389556 stopgain 0.990 0 23 hm5C_associated_SNPs_60577 0 0 0 0 2 SPNS3 chr17:4389621 5'GT 4389621 Upstream 66bp
chr8 145151057 145151057 1 + G T COAD 145151055 + 145151035 145151075 41 GGGGTTTCCAGGTATATAAGCAGGTGTGCGCCTCCTGCCAC GGGGTTTCCAGGTATATAAGCATGTGTGCGCCTCCTGCCAC < 41bp 0.883533295886212 0.61650193451726 0.91803837 0.5454223 prediction 0.534062722737903 Functional Loss - CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151055 chr8:145151057 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_60578 0 0 1 0 2 CYC1 chr8:145151027 3'AG 145151027 Downstream 31bp
chr8 145151057 145151057 1 + G T COAD 145151055 + 145151035 145151075 41 GGGGTTTCCAGGTATATAAGCAGGTGTGCGCCTCCTGCCAC GGGGTTTCCAGGTATATAAGCATGTGTGCGCCTCCTGCCAC < 41bp 0.883533295886212 0.61650193451726 0.91803837 0.5454223 prediction 0.534062722737903 Functional Loss - CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151055 chr8:145151057 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_60578 0 0 1 0 2 CYC1 chr8:145151153 5'GT 145151153 Upstream 97bp
chr19 4491785 4491785 1 + G T SARC 4491783 + 4491763 4491803 41 CTTCACACCTGAGAAGAAAGCAGCGGTCCGGGCGCCACGGA CTTCACACCTGAGAAGAAAGCATCGGTCCGGGCGCCACGGA < 41bp 0.885349541163857 0.618322918101618 0.882709 0.24422166 prediction 0.534053246124478 Functional Loss - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4491783 chr19:4491785 nonsynonymous SNV 0.426 0 23 hm5C_associated_SNPs_60579 0 0 1 0 2 HDGFL2 chr19:4491761 3'AG 4491761 Downstream 25bp
chr19 4491785 4491785 1 + G T SARC 4491783 + 4491763 4491803 41 CTTCACACCTGAGAAGAAAGCAGCGGTCCGGGCGCCACGGA CTTCACACCTGAGAAGAAAGCATCGGTCCGGGCGCCACGGA < 41bp 0.885349541163857 0.618322918101618 0.882709 0.24422166 prediction 0.534053246124478 Functional Loss - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4491783 chr19:4491785 nonsynonymous SNV 0.426 0 23 hm5C_associated_SNPs_60579 0 0 1 0 2 HDGFL2 chr19:4491832 5'GT 4491832 Upstream 48bp
chr11 812594 812594 1 + G T STAD 812592 + 812572 812612 41 TGTAGCCGTCTCTGCTGCCCCAGGCTCTGCAGCCCCTGCTG TGTAGCCGTCTCTGCTGCCCCATGCTCTGCAGCCCCTGCTG < 41bp 0.874502202364365 0.607476629584627 0.87630314 0.31045067 prediction 0.534051145559477 Functional Loss - RPLP2 ENSG00000177600 CDS Human protein_coding chr11:812592 chr11:812594 nonsynonymous SNV 0.267 3 23 hm5C_associated_SNPs_60580 0 0 1 0 2 RPLP2 chr11:812535 3'AG 812535 Downstream 60bp
chr11 812594 812594 1 + G T STAD 812592 + 812572 812612 41 TGTAGCCGTCTCTGCTGCCCCAGGCTCTGCAGCCCCTGCTG TGTAGCCGTCTCTGCTGCCCCATGCTCTGCAGCCCCTGCTG < 41bp 0.874502202364365 0.607476629584627 0.87630314 0.31045067 prediction 0.534051145559477 Functional Loss - RPLP2 ENSG00000177600 CDS Human protein_coding chr11:812592 chr11:812594 nonsynonymous SNV 0.267 3 23 hm5C_associated_SNPs_60580 0 0 1 0 2 RPLP2 chr11:812633 5'GT 812633 Upstream 40bp
chr1 32557320 32557320 1 + G C LUAD 32557316 + 32557296 32557336 41 TCCTGCAGCTGAATTGCGACCTCCGCAAGACAAGCCTCTTC TCCTGCAGCTGAATTGCGACCTCCCCAAGACAAGCCTCTTC < 41bp 0.794015548521046 0.526997246666081 0.08774927 0.0386512 prediction 0.53403660370993 Functional Loss - TMEM39B ENSG00000121775 CDS Human protein_coding chr1:32557316 chr1:32557320 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_60583 0 0 1 2 2 TMEM39B chr1:32557273 3'AG 32557273 Downstream 48bp
chr1 32557320 32557320 1 + G C LUAD 32557316 + 32557296 32557336 41 TCCTGCAGCTGAATTGCGACCTCCGCAAGACAAGCCTCTTC TCCTGCAGCTGAATTGCGACCTCCCCAAGACAAGCCTCTTC < 41bp 0.794015548521046 0.526997246666081 0.08774927 0.0386512 prediction 0.53403660370993 Functional Loss - TMEM39B ENSG00000121775 CDS Human protein_coding chr1:32557316 chr1:32557320 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_60583 0 0 1 2 2 TMEM39B chr1:32557276 3'AG 32557276 Downstream 45bp
chr12 120878267 120878267 1 + G T LIHC 120878265 + 120878245 120878285 41 TTCACTCCACAGCCGTTTCCCTGGGGAGATGGTAACCATAC TTCACTCCACAGCCGTTTCCCTTGGGAGATGGTAACCATAC < 41bp 0.856262908805862 0.589246149630073 0.39999336 0.015047938 prediction 0.534033518351579 Functional Loss - COX6A1 ENSG00000111775 CDS Human protein_coding chr12:120878265 chr12:120878267 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_60584 0 0 1 0 1 COX6A1 chr12:120878257 3'AG 120878257 Downstream 11bp
chr19 50001265 50001265 1 + C T COAD 50001263 + 50001243 50001283 41 AGTACAACCGCTTCGAGAAGCGCCACAAGAACATGTCTGTA AGTACAACCGCTTCGAGAAGCGTCACAAGAACATGTCTGTA < 41bp 0.78704354180251 0.52003903356945 0.24124739 0.2623429 prediction 0.534009016466121 Functional Loss - RPS11 ENSG00000142534 CDS Human protein_coding chr19:50001263 chr19:50001265 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_60587 0 0 1 0 2 RPS11 chr19:50001174 3'AG 50001174 Downstream 92bp
chr19 50001265 50001265 1 + C T COAD 50001263 + 50001243 50001283 41 AGTACAACCGCTTCGAGAAGCGCCACAAGAACATGTCTGTA AGTACAACCGCTTCGAGAAGCGTCACAAGAACATGTCTGTA < 41bp 0.78704354180251 0.52003903356945 0.24124739 0.2623429 prediction 0.534009016466121 Functional Loss - RPS11 ENSG00000142534 CDS Human protein_coding chr19:50001263 chr19:50001265 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_60587 0 0 1 0 2 RPS11 chr19:50001303 5'GT 50001303 Upstream 39bp
chr1 160147389 160147389 1 + G T LUAD 160147386 + 160147366 160147406 41 GTTTTAGGCCTGTTGATCTGCTGGGCATCCGCCTCCACTGG GTTTTAGGCCTGTTGATCTGCTGTGCATCCGCCTCCACTGG < 41bp 0.766991806095183 0.362487527681754 0.18872705 0.017712206 prediction 0.533983612190365 Functional Loss - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160147386 chr1:160147389 nonsynonymous SNV 0.860 5 24 hm5C_associated_SNPs_60590 0 0 0 0 2 ATP1A4 chr1:160147309 3'AG 160147309 Downstream 81bp
chr1 160147389 160147389 1 + G T LUAD 160147386 + 160147366 160147406 41 GTTTTAGGCCTGTTGATCTGCTGGGCATCCGCCTCCACTGG GTTTTAGGCCTGTTGATCTGCTGTGCATCCGCCTCCACTGG < 41bp 0.766991806095183 0.362487527681754 0.18872705 0.017712206 prediction 0.533983612190365 Functional Loss - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160147386 chr1:160147389 nonsynonymous SNV 0.860 5 24 hm5C_associated_SNPs_60590 0 0 0 0 2 ATP1A4 chr1:160147454 5'GT 160147454 Upstream 66bp
chr15 41145959 41145959 1 + C T PRAD 41145957 + 41145937 41145977 41 TCGCTGCCGGGGCTCTTTCCCACGCTGGTACTATGACCCCA TCGCTGCCGGGGCTCTTTCCCATGCTGGTACTATGACCCCA < 41bp 0.768867493252619 0.501881507460936 0.84074306 0.85198295 prediction 0.533971971583367 Functional Loss - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41145957 chr15:41145959 nonsynonymous SNV 0.967 4 23 hm5C_associated_SNPs_60591 0 0 0 0 1 SPINT1 chr15:41145909 3'AG 41145909 Downstream 51bp
chr1 168262507 168262507 1 + G T GBM 168262505 + 168262485 168262525 41 TCATAGCCGTGACTGCCTATCAGAATGAGGAGGTAAGAGTG TCATAGCCGTGACTGCCTATCATAATGAGGAGGTAAGAGTG < 41bp 0.766980300384953 0.431569216023944 0.90830773 0.317644 prediction 0.533960600769906 Functional Loss - TBX19 ENSG00000143178 CDS Human protein_coding chr1:168262505 chr1:168262507 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_60593 0 0 1 0 1 TBX19 chr1:168262516 5'GT 168262516 Upstream 10bp
chr20 37621023 37621023 1 + C T LIHC 37621021 + 37621001 37621041 41 TCATCATGCTGGATGAAGCCCACGAGAGGACCTTGTACACT TCATCATGCTGGATGAAGCCCATGAGAGGACCTTGTACACT < 41bp 0.785723562142018 0.518748277900499 0.12646759 0.16092798 prediction 0.533950568483037 Functional Loss - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37621021 chr20:37621023 synonymous SNV . 0 23 hm5C_associated_SNPs_60596 0 0 1 0 1 DHX35 chr20:37621068 5'GT 37621068 Upstream 46bp
chr3 58067448 58067448 1 + G C GBM 58067447 + 58067427 58067467 41 CCCCAAAGCCAAGCTCAAGCCGGGGGCTCCTCTCAAACCCA CCCCAAAGCCAAGCTCAAGCCCGGGGCTCCTCTCAAACCCA < 41bp 0.766972751986701 0.476173081140852 0.88329387 0.82982457 prediction 0.533945503973403 Functional Loss - FLNB ENSG00000136068 CDS Human protein_coding chr3:58067447 chr3:58067448 synonymous SNV . 0 22 hm5C_associated_SNPs_60598 0 0 1 0 2 FLNB chr3:58067356 3'AG 58067356 Downstream 93bp
chr3 58067448 58067448 1 + G C GBM 58067447 + 58067427 58067467 41 CCCCAAAGCCAAGCTCAAGCCGGGGGCTCCTCTCAAACCCA CCCCAAAGCCAAGCTCAAGCCCGGGGCTCCTCTCAAACCCA < 41bp 0.766972751986701 0.476173081140852 0.88329387 0.82982457 prediction 0.533945503973403 Functional Loss - FLNB ENSG00000136068 CDS Human protein_coding chr3:58067447 chr3:58067448 synonymous SNV . 0 22 hm5C_associated_SNPs_60598 0 0 1 0 2 FLNB chr3:58067503 5'GT 58067503 Upstream 56bp
chr15 40944268 40944268 1 + C T KICH 40944266 + 40944246 40944286 41 GTATTCACCTTTGTTTATGACACGATACAACTCACCATCAC GTATTCACCTTTGTTTATGACATGATACAACTCACCATCAC < 41bp 0.774362999028179 0.507391909707739 0.136183 0.17414525 prediction 0.53394217864088 Functional Loss - KNL1 ENSG00000137812 CDS Human protein_coding chr15:40944266 chr15:40944268 nonsynonymous SNV 0.808 4 23 hm5C_associated_SNPs_60599 0 0 1 0 2 KNL1 chr15:40944203 3'AG 40944203 Downstream 66bp
chr15 40944268 40944268 1 + C T KICH 40944266 + 40944246 40944286 41 GTATTCACCTTTGTTTATGACACGATACAACTCACCATCAC GTATTCACCTTTGTTTATGACATGATACAACTCACCATCAC < 41bp 0.774362999028179 0.507391909707739 0.136183 0.17414525 prediction 0.53394217864088 Functional Loss - KNL1 ENSG00000137812 CDS Human protein_coding chr15:40944266 chr15:40944268 nonsynonymous SNV 0.808 4 23 hm5C_associated_SNPs_60599 0 0 1 0 2 KNL1 chr15:40944303 5'GT 40944303 Upstream 36bp
chr1 156901765 156901765 1 + G T COAD 156901762 + 156901742 156901782 41 TCCTGGAGCCTGTGGAGCACCGAGATGGGAAAGTTTTCATG TCCTGGAGCCTGTGGAGCACCGATATGGGAAAGTTTTCATG < 41bp 0.9060598808927 0.639101021715268 0.38710934 0.0729709 prediction 0.533917718354864 Functional Loss - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156901762 chr1:156901765 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_60600 0 0 0 0 3 LRRC71 chr1:156901705 3'AG 156901705 Downstream 61bp
chr1 156901765 156901765 1 + G T COAD 156901762 + 156901742 156901782 41 TCCTGGAGCCTGTGGAGCACCGAGATGGGAAAGTTTTCATG TCCTGGAGCCTGTGGAGCACCGATATGGGAAAGTTTTCATG < 41bp 0.9060598808927 0.639101021715268 0.38710934 0.0729709 prediction 0.533917718354864 Functional Loss - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156901762 chr1:156901765 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_60600 0 0 0 0 3 LRRC71 chr1:156901708 3'AG 156901708 Downstream 58bp
chr1 156901765 156901765 1 + G T COAD 156901762 + 156901742 156901782 41 TCCTGGAGCCTGTGGAGCACCGAGATGGGAAAGTTTTCATG TCCTGGAGCCTGTGGAGCACCGATATGGGAAAGTTTTCATG < 41bp 0.9060598808927 0.639101021715268 0.38710934 0.0729709 prediction 0.533917718354864 Functional Loss - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156901762 chr1:156901765 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_60600 0 0 0 0 3 LRRC71 chr1:156901819 5'GT 156901819 Upstream 55bp
chr16 2282245 2282245 1 + G T LUSC 2282242 + 2282222 2282262 41 GACGGTGAGATGGCCGAGGCCCCGGGCAGCCCCCGCCAGCA GACGGTGAGATGGCCGAGGCCCCTGGCAGCCCCCGCCAGCA < 41bp 0.766949462736452 0.374430222857246 0.6824349 0.38109022 prediction 0.533898925472903 Functional Loss - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2282242 chr16:2282245 synonymous SNV . 0 24 hm5C_associated_SNPs_60601 0 0 1 0 1 E4F1 chr16:2282172 3'AG 2282172 Downstream 74bp
chr11 65108998 65108998 1 + G T STAD 65108995 + 65108975 65109015 41 CCCGAGTTGATGATGACAGCCTGGGCGAGTTTCCTGTGACC CCCGAGTTGATGATGACAGCCTGTGCGAGTTTCCTGTGACC < 41bp 0.766938969413774 0.365586238846138 0.7505287 0.09993404 prediction 0.533877938827549 Functional Loss - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65108995 chr11:65108998 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_60602 0 0 1 0 1 DPF2 chr11:65109033 5'GT 65109033 Upstream 36bp
chr11 36467855 36467855 1 + G T UCEC 36467853 + 36467833 36467873 41 TCCTCTGTCCCCTCTAGGGCCAGGAGCTGACTATCCGCCAG TCCTCTGTCCCCTCTAGGGCCATGAGCTGACTATCCGCCAG < 41bp 0.87977476194063 0.61283686071621 0.9091829 0.8393405 prediction 0.533875802448839 Functional Loss - PRR5L ENSG00000135362 CDS Human protein_coding chr11:36467853 chr11:36467855 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_60603 0 0 0 0 1 PRR5L chr11:36467850 3'AG 36467850 Downstream 6bp
chr16 3108273 3108273 1 + G T UCEC 3108271 + 3108251 3108291 41 TCTGGGAGGGGCTGCCCGCCCAGGTGAGGGTGGTGCAGGCC TCTGGGAGGGGCTGCCCGCCCATGTGAGGGTGGTGCAGGCC < 41bp 0.873391765466613 0.606468042710319 0.9379442 0.3197909 prediction 0.533847445512589 Functional Loss - MMP25 ENSG00000008516 CDS Human protein_coding chr16:3108271 chr16:3108273 nonsynonymous SNV 0.009 0 23 hm5C_associated_SNPs_60605 0 0 0 0 2 MMP25 chr16:3108182 3'AG 3108182 Downstream 92bp
chr16 3108273 3108273 1 + G T UCEC 3108271 + 3108251 3108291 41 TCTGGGAGGGGCTGCCCGCCCAGGTGAGGGTGGTGCAGGCC TCTGGGAGGGGCTGCCCGCCCATGTGAGGGTGGTGCAGGCC < 41bp 0.873391765466613 0.606468042710319 0.9379442 0.3197909 prediction 0.533847445512589 Functional Loss - MMP25 ENSG00000008516 CDS Human protein_coding chr16:3108271 chr16:3108273 nonsynonymous SNV 0.009 0 23 hm5C_associated_SNPs_60605 0 0 0 0 2 MMP25 chr16:3108334 5'GT 3108334 Upstream 62bp
chr2 172563838 172563838 1 + C T SKCM 172563836 + 172563816 172563856 41 ATCCTCCAAATCTGTGAGCACTCCAAGTGAAGCTGGAAGCC ATCCTCCAAATCTGTGAGCACTTCAAGTGAAGCTGGAAGCC < 41bp 0.812100254400324 0.54518041435243 0.9486879 0.4542629 prediction 0.533839680095789 Functional Loss - DYNC1I2 ENSG00000077380 CDS Human protein_coding chr2:172563836 chr2:172563838 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_60606 0 0 1 0 3 DYNC1I2 chr2:172563743 3'AG 172563743 Downstream 96bp
chr2 172563838 172563838 1 + C T SKCM 172563836 + 172563816 172563856 41 ATCCTCCAAATCTGTGAGCACTCCAAGTGAAGCTGGAAGCC ATCCTCCAAATCTGTGAGCACTTCAAGTGAAGCTGGAAGCC < 41bp 0.812100254400324 0.54518041435243 0.9486879 0.4542629 prediction 0.533839680095789 Functional Loss - DYNC1I2 ENSG00000077380 CDS Human protein_coding chr2:172563836 chr2:172563838 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_60606 0 0 1 0 3 DYNC1I2 chr2:172563797 3'AG 172563797 Downstream 42bp
chr2 172563838 172563838 1 + C T SKCM 172563836 + 172563816 172563856 41 ATCCTCCAAATCTGTGAGCACTCCAAGTGAAGCTGGAAGCC ATCCTCCAAATCTGTGAGCACTTCAAGTGAAGCTGGAAGCC < 41bp 0.812100254400324 0.54518041435243 0.9486879 0.4542629 prediction 0.533839680095789 Functional Loss - DYNC1I2 ENSG00000077380 CDS Human protein_coding chr2:172563836 chr2:172563838 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_60606 0 0 1 0 3 DYNC1I2 chr2:172563887 5'GT 172563887 Upstream 50bp
chr4 3425331 3425331 1 + G T UCEC 3425328 + 3425308 3425348 41 GGTGCTGCGGCCCGTGGTGGCCAGATACGGCCTGGACCTCA GGTGCTGCGGCCCGTGGTGGCCATATACGGCCTGGACCTCA < 41bp 0.766904774164557 0.406508971331216 0.88277256 0.92254317 prediction 0.533809548329114 Functional Loss - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3425328 chr4:3425331 nonsynonymous SNV 0.620 2 24 hm5C_associated_SNPs_60611 0 0 0 0 2 RGS12 chr4:3425242 3'AG 3425242 Downstream 90bp
chr4 3425331 3425331 1 + G T UCEC 3425328 + 3425308 3425348 41 GGTGCTGCGGCCCGTGGTGGCCAGATACGGCCTGGACCTCA GGTGCTGCGGCCCGTGGTGGCCATATACGGCCTGGACCTCA < 41bp 0.766904774164557 0.406508971331216 0.88277256 0.92254317 prediction 0.533809548329114 Functional Loss - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3425328 chr4:3425331 nonsynonymous SNV 0.620 2 24 hm5C_associated_SNPs_60611 0 0 0 0 2 RGS12 chr4:3425368 5'GT 3425368 Upstream 38bp
chr16 81279173 81279173 1 + G T LUAD 81279171 + 81279151 81279191 41 AGATACAACCATTGGTTCGACGGCCTTGCCCTGCTCCACAG AGATACAACCATTGGTTCGACGTCCTTGCCCTGCTCCACAG < 41bp 0.766901529890257 0.416903012275534 0.21369636 0.11455575 prediction 0.533803059780513 Functional Loss - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81279171 chr16:81279173 nonsynonymous SNV 0.831 5 23 hm5C_associated_SNPs_60612 0 0 0 0 2 BCO1 chr16:81279080 3'AG 81279080 Downstream 94bp
chr16 81279173 81279173 1 + G T LUAD 81279171 + 81279151 81279191 41 AGATACAACCATTGGTTCGACGGCCTTGCCCTGCTCCACAG AGATACAACCATTGGTTCGACGTCCTTGCCCTGCTCCACAG < 41bp 0.766901529890257 0.416903012275534 0.21369636 0.11455575 prediction 0.533803059780513 Functional Loss - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81279171 chr16:81279173 nonsynonymous SNV 0.831 5 23 hm5C_associated_SNPs_60612 0 0 0 0 2 BCO1 chr16:81279208 5'GT 81279208 Upstream 36bp
chr9 131105460 131105460 1 + G T LUAD 131105457 + 131105437 131105477 41 GGGTGCTGCTGTTCTCCAAGCTGGTGCTGAAACTGCCCTGG GGGTGCTGCTGTTCTCCAAGCTGTTGCTGAAACTGCCCTGG < 41bp 0.766900832947265 0.366515933971102 0.60129195 0.32194227 prediction 0.53380166589453 Functional Loss - SLC27A4 ENSG00000167114 CDS Human protein_coding chr9:131105457 chr9:131105460 nonsynonymous SNV 0.883 0 24 hm5C_associated_SNPs_60613 0 0 1 0 1 SLC27A4 chr9:131105406 3'AG 131105406 Downstream 55bp
chr7 43503371 43503371 1 + G T COAD 43503369 + 43503349 43503389 41 CGGAGGTGGAGGGAGTGACTCAGAAGCCGAATCTTCCCAGT CGGAGGTGGAGGGAGTGACTCATAAGCCGAATCTTCCCAGT < 41bp 0.766888488334521 0.43470550028752 0.90164953 0.32556722 prediction 0.533776976669042 Functional Loss - HECW1 ENSG00000002746 CDS Human protein_coding chr7:43503369 chr7:43503371 stopgain 0.986 0 23 hm5C_associated_SNPs_60614 0 0 0 0 1 HECW1 chr7:43503398 5'GT 43503398 Upstream 28bp
chr1 113232098 113232098 1 + C T UCEC 113232096 + 113232076 113232116 41 AGTCCAGGGGCCCCATGAAGCCCGAGATGGGCAGCTCCTTA AGTCCAGGGGCCCCATGAAGCCTGAGATGGGCAGCTCCTTA < 41bp 0.771559720152164 0.504685331641736 0.1520305 0.07696062 prediction 0.533748777020856 Functional Loss - MOV10 ENSG00000155363 CDS Human protein_coding chr1:113232096 chr1:113232098 stopgain 1.000 0 23 hm5C_associated_SNPs_60617 0 0 1 0 1 MOV10 chr1:113232037 3'AG 113232037 Downstream 62bp
chr3 32409463 32409463 1 + A C UCEC 32409459 + 32409439 32409479 41 GAGAGGGACAGTCACAACTTCAACAGCTGGGCGGCCTCATC GAGAGGGACAGTCACAACTTCAACCGCTGGGCGGCCTCATC < 41bp 0.766871874778851 0.356217437705412 0.17123708 0.19341359 prediction 0.533743749557703 Functional Loss - CMTM8 ENSG00000170293 CDS Human protein_coding chr3:32409459 chr3:32409463 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_60618 0 0 1 0 2 CMTM8 chr3:32409364 3'AG 32409364 Downstream 100bp
chr3 32409463 32409463 1 + A C UCEC 32409459 + 32409439 32409479 41 GAGAGGGACAGTCACAACTTCAACAGCTGGGCGGCCTCATC GAGAGGGACAGTCACAACTTCAACCGCTGGGCGGCCTCATC < 41bp 0.766871874778851 0.356217437705412 0.17123708 0.19341359 prediction 0.533743749557703 Functional Loss - CMTM8 ENSG00000170293 CDS Human protein_coding chr3:32409459 chr3:32409463 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_60618 0 0 1 0 2 CMTM8 chr3:32409480 5'GT 32409480 Upstream 18bp
chr17 27577230 27577230 1 + G T COAD 27577227 + 27577207 27577247 41 TCTATGATCAGGAGAACTTTCAGGGCAAGAGGATGGAGTTC TCTATGATCAGGAGAACTTTCAGTGCAAGAGGATGGAGTTC < 41bp 0.905676108449231 0.638814700985028 0.94438046 0.53049946 prediction 0.533722814928405 Functional Loss - CRYBA1 ENSG00000108255 CDS Human protein_coding chr17:27577227 chr17:27577230 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_60620 0 0 0 0 2 CRYBA1 chr17:27577200 3'AG 27577200 Downstream 31bp
chr17 27577230 27577230 1 + G T COAD 27577227 + 27577207 27577247 41 TCTATGATCAGGAGAACTTTCAGGGCAAGAGGATGGAGTTC TCTATGATCAGGAGAACTTTCAGTGCAAGAGGATGGAGTTC < 41bp 0.905676108449231 0.638814700985028 0.94438046 0.53049946 prediction 0.533722814928405 Functional Loss - CRYBA1 ENSG00000108255 CDS Human protein_coding chr17:27577227 chr17:27577230 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_60620 0 0 0 0 2 CRYBA1 chr17:27577318 5'GT 27577318 Upstream 89bp
chr6 43042368 43042368 1 + G T KIRP 43042366 + 43042346 43042386 41 GTTGTCTGTTTCAGGTCTCCCGGGGCCTCAGTGCCAGCACC GTTGTCTGTTTCAGGTCTCCCGTGGCCTCAGTGCCAGCACC < 41bp 0.873884614219697 0.607024520212122 0.92593396 0.85946596 prediction 0.533720188015149 Functional Loss - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43042366 chr6:43042368 synonymous SNV . 0 23 hm5C_associated_SNPs_60621 0 0 1 0 1 KLC4 chr6:43042360 3'AG 43042360 Downstream 9bp
chr17 77709420 77709420 1 + G T LUAD 77709417 + 77709397 77709437 41 TTCCACTACGCCAACAACCCCAGGGTCACACCCCTGCTGAT TTCCACTACGCCAACAACCCCAGTGTCACACCCCTGCTGAT < 41bp 0.766858322882355 0.366519308709089 0.94508266 0.6906401 prediction 0.53371664576471 Functional Loss - ENPP7 ENSG00000182156 CDS Human protein_coding chr17:77709417 chr17:77709420 nonsynonymous SNV 0.897 4 24 hm5C_associated_SNPs_60623 0 0 1 0 1 ENPP7 chr17:77709468 5'GT 77709468 Upstream 49bp
chr5 52780903 52780903 1 + G T LUAD 52780901 + 52780881 52780921 41 ATTTCAAGGTTGGGAGAGGCCGGTGTTCCCTCTGTGATGAG ATTTCAAGGTTGGGAGAGGCCGTTGTTCCCTCTGTGATGAG < 41bp 0.766849623701708 0.44713728136543 0.56150347 0.20904636 prediction 0.533699247403415 Functional Loss - FST ENSG00000134363 CDS Human protein_coding chr5:52780901 chr5:52780903 synonymous SNV . 0 23 hm5C_associated_SNPs_60624 0 0 1 0 1 FST chr5:52780827 3'AG 52780827 Downstream 77bp
chr6 90333241 90333241 1 + G T UCEC 90333239 + 90333219 90333259 41 GAACCCAGAGCAAAGGATGACAGGAGGAGAAAGTCAAGGCC GAACCCAGAGCAAAGGATGACATGAGGAGAAAGTCAAGGCC < 41bp 0.877378810824619 0.610533207328409 0.90597594 0.6941831 prediction 0.53369120699242 Functional Loss - ANKRD6 ENSG00000135299 CDS Human protein_coding chr6:90333239 chr6:90333241 nonsynonymous SNV 0.584 1 23 hm5C_associated_SNPs_60625 0 0 0 0 1 ANKRD6 chr6:90333263 5'GT 90333263 Upstream 23bp
chr6 150464574 150464574 1 + G T THCA 150464572 + 150464552 150464592 41 AATACGATCGTAAGGAGCTTCGGAAGCGGCTGGTGCTGGAG AATACGATCGTAAGGAGCTTCGTAAGCGGCTGGTGCTGGAG < 41bp 0.866376764876188 0.599532854152593 0.2997035 0.07749003 prediction 0.533687821447191 Functional Loss - PPP1R14C ENSG00000198729 CDS Human protein_coding chr6:150464572 chr6:150464574 synonymous SNV . 0 23 hm5C_associated_SNPs_60626 0 0 1 0 1 PPP1R14C chr6:150464634 5'GT 150464634 Upstream 61bp
chr16 2636802 2636802 1 + C T rs532663585 2636800 + 2636780 2636820 41 GCAACATAGAGCAGTACATTCACGATCTGGACTCGAACTCC GCAACATAGAGCAGTACATTCATGATCTGGACTCGAACTCC < 41bp 0.782951828805772 0.516109231775157 0.15880552 0.227687 prediction 0.533685194061231 Functional Loss - PDPK1 ENSG00000140992 CDS Human protein_coding chr16:2636800 chr16:2636802 synonymous SNV . 0 23 hm5C_associated_SNPs_60627 0 0 1 0 1 PDPK1 chr16:2636894 5'GT 2636894 Upstream 93bp
chr9 116038943 116038943 1 + G T UCEC 116038940 + 116038920 116038960 41 GCGTCTGGCCAAAGGAGAGTCTGGGATTTTGGGGAAAGACG GCGTCTGGCCAAAGGAGAGTCTGTGATTTTGGGGAAAGACG < 41bp 0.76683617719699 0.371181599063493 0.5871687 0.14396378 prediction 0.53367235439398 Functional Loss - PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116038940 chr9:116038943 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_60629 0 0 1 0 1 PRPF4 chr9:116039005 5'GT 116039005 Upstream 63bp
chr1 63282307 63282307 1 + A T COAD 63282303 + 63282283 63282323 41 AATAGAGGATCACGTAATTGCAGGAAATGTAGAAGAATTTC AATAGAGGATCACGTAATTGCAGGTAATGTAGAAGAATTTC < 41bp 0.836677790269452 0.569875667504453 0.6963786 0.5653693 prediction 0.533604245529997 Functional Loss - ATG4C ENSG00000125703 CDS Human protein_coding chr1:63282303 chr1:63282307 synonymous SNV . 0 25 hm5C_associated_SNPs_60631 0 0 1 0 1 ATG4C chr1:63282246 3'AG 63282246 Downstream 62bp
chr3 101573954 101573954 1 + G T BLCA 101573951 + 101573931 101573971 41 CCAATCAGCATCTCATTGTGCAGGATCTGGTGAACATCGGG CCAATCAGCATCTCATTGTGCAGTATCTGGTGAACATCGGG < 41bp 0.766787097618714 0.37539476992501 0.35711372 0.24346766 prediction 0.533574195237428 Functional Loss - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101573951 chr3:101573954 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_60634 0 0 1 0 1 NFKBIZ chr3:101574052 5'GT 101574052 Upstream 99bp
chr19 55597479 55597479 1 + G T STAD 55597477 + 55597457 55597497 41 AGGTTCGGGACCCAGCGGGGCAGGAGGGATATGTGCCCTAC AGGTTCGGGACCCAGCGGGGCATGAGGGATATGTGCCCTAC < 41bp 0.870670290323545 0.603889143560082 0.8832104 0.6830181 prediction 0.533562293526924 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55597477 chr19:55597479 nonsynonymous SNV 0.358 3 23 hm5C_associated_SNPs_60637 0 0 0 0 1 EPS8L1 chr19:55597429 3'AG 55597429 Downstream 51bp
chr9 34512171 34512171 1 + G T UCEC 34512169 + 34512149 34512189 41 TTCTCTGTGTCATCTGACGGCAGGATTGTGTCTTGGACTCT TTCTCTGTGTCATCTGACGGCATGATTGTGTCTTGGACTCT < 41bp 0.766777245169187 0.428599711644231 0.6985402 0.3107624 prediction 0.533554490338373 Functional Loss - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34512169 chr9:34512171 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_60638 0 0 0 0 2 DNAI1 chr9:34512107 3'AG 34512107 Downstream 65bp
chr9 34512171 34512171 1 + G T UCEC 34512169 + 34512149 34512189 41 TTCTCTGTGTCATCTGACGGCAGGATTGTGTCTTGGACTCT TTCTCTGTGTCATCTGACGGCATGATTGTGTCTTGGACTCT < 41bp 0.766777245169187 0.428599711644231 0.6985402 0.3107624 prediction 0.533554490338373 Functional Loss - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34512169 chr9:34512171 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_60638 0 0 0 0 2 DNAI1 chr9:34512196 5'GT 34512196 Upstream 26bp
chr10 75676214 75676214 1 + G T COAD 75676212 + 75676192 75676232 41 ACTTTGACTGGAATTGTGAGCTGGGGCCGTGGATGTGCCCT ACTTTGACTGGAATTGTGAGCTTGGGCCGTGGATGTGCCCT < 41bp 0.866250381316254 0.5994752348128 0.39799917 0.20638716 prediction 0.533550293006908 Functional Loss - PLAU ENSG00000122861 CDS Human protein_coding chr10:75676212 chr10:75676214 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_60639 0 0 0 0 1 PLAU chr10:75676147 3'AG 75676147 Downstream 68bp
chr1 6676846 6676846 1 + G T UCEC 6676843 + 6676823 6676863 41 TCCCCCAGTTGCAAGAGGCGCAGGACCGTGGAAGACTTCAA TCCCCCAGTTGCAAGAGGCGCAGTACCGTGGAAGACTTCAA < 41bp 0.766772464775558 0.374039400755486 0.80386513 0.34952563 prediction 0.533544929551117 Functional Loss - PHF13 ENSG00000116273 CDS Human protein_coding chr1:6676843 chr1:6676846 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_60640 0 0 1 0 2 PHF13 chr1:6676817 3'AG 6676817 Downstream 30bp
chr1 6676846 6676846 1 + G T UCEC 6676843 + 6676823 6676863 41 TCCCCCAGTTGCAAGAGGCGCAGGACCGTGGAAGACTTCAA TCCCCCAGTTGCAAGAGGCGCAGTACCGTGGAAGACTTCAA < 41bp 0.766772464775558 0.374039400755486 0.80386513 0.34952563 prediction 0.533544929551117 Functional Loss - PHF13 ENSG00000116273 CDS Human protein_coding chr1:6676843 chr1:6676846 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_60640 0 0 1 0 2 PHF13 chr1:6676918 5'GT 6676918 Upstream 73bp
chr3 40085735 40085735 1 + G T COAD 40085733 + 40085713 40085753 41 TACCAGAAGCACGAAAAGGCCTGGGTCTGCTGCGTCTGCCA TACCAGAAGCACGAAAAGGCCTTGGTCTGCTGCGTCTGCCA < 41bp 0.766765747728949 0.441607088226791 0.7470282 0.59399134 prediction 0.533531495457899 Functional Loss - MYRIP ENSG00000170011 CDS Human protein_coding chr3:40085733 chr3:40085735 nonsynonymous SNV 0.879 4 23 hm5C_associated_SNPs_60643 0 0 0 0 1 MYRIP chr3:40085762 5'GT 40085762 Upstream 28bp
chrX 107169377 107169377 1 + A T LUAD 107169373 + 107169353 107169393 41 ACTCACAAGAAGTTGAAGATCTCCAATGATGGATTGCAGAT ACTCACAAGAAGTTGAAGATCTCCTATGATGGATTGCAGAT < 41bp 0.766756940601525 0.416801613154842 0.9688989 0.30877322 prediction 0.53351388120305 Functional Loss - MID2 ENSG00000080561 CDS Human protein_coding chrX:107169373 chrX:107169377 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_60644 0 0 0 0 1 MID2 chrX:107169324 3'AG 107169324 Downstream 54bp
chr11 12495373 12495373 1 + C T COAD 12495371 + 12495351 12495391 41 TTTGAGCTGGACCCCGAGGACACGATGCTGGGTAACTGTGC TTTGAGCTGGACCCCGAGGACATGATGCTGGGTAACTGTGC < 41bp 0.780031036892265 0.513280415909812 0.11396718 0.070221335 prediction 0.533501241964905 Functional Loss - PARVA ENSG00000197702 CDS Human protein_coding chr11:12495371 chr11:12495373 nonsynonymous SNV 0.796 2 23 hm5C_associated_SNPs_60645 0 0 0 0 1 PARVA chr11:12495381 5'GT 12495381 Upstream 9bp
chr12 122372208 122372208 1 + C T GBM 122372206 + 122372186 122372226 41 AGTGAAGACAGGCGGTGGATCGCCACAGCAGACAAAGGGCC AGTGAAGACAGGCGGTGGATCGTCACAGCAGACAAAGGGCC < 41bp 0.794488094648474 0.527752685949582 0.3312058 0.1287956 prediction 0.533470817397784 Functional Loss - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122372206 chr12:122372208 nonsynonymous SNV 0.925 1 23 hm5C_associated_SNPs_60648 0 0 1 0 1 WDR66 chr12:122372153 3'AG 122372153 Downstream 56bp
chr2 241631685 241631685 1 + G T UCEC 241631683 + 241631663 241631703 41 CGCTGTTGAAGCTGGCGGCACAGGGGCTGGGCATGCAGGCC CGCTGTTGAAGCTGGCGGCACATGGGCTGGGCATGCAGGCC < 41bp 0.880408035268688 0.613681855138987 0.71855175 0.41570252 prediction 0.533452360259402 Functional Loss - AQP12A ENSG00000184945 CDS Human protein_coding chr2:241631683 chr2:241631685 nonsynonymous SNV 0.564 1 23 hm5C_associated_SNPs_60651 0 0 0 0 1 AQP12A chr2:241631629 3'AG 241631629 Downstream 57bp
chr13 113487266 113487266 1 + G C LUSC 113487262 + 113487242 113487282 41 CGTAGACGGCCCCAGGAAATCGCCGGACGGGGGGAAATCCT CGTAGACGGCCCCAGGAAATCGCCCGACGGGGGGAAATCCT < 41bp 0.766710915509067 0.483323518480795 0.81175363 0.10027498 prediction 0.533421831018135 Functional Loss - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113487262 chr13:113487266 synonymous SNV . 0 25 hm5C_associated_SNPs_60654 0 0 1 0 2 ATP11A chr13:113487174 3'AG 113487174 Downstream 93bp
chr13 113487266 113487266 1 + G C LUSC 113487262 + 113487242 113487282 41 CGTAGACGGCCCCAGGAAATCGCCGGACGGGGGGAAATCCT CGTAGACGGCCCCAGGAAATCGCCCGACGGGGGGAAATCCT < 41bp 0.766710915509067 0.483323518480795 0.81175363 0.10027498 prediction 0.533421831018135 Functional Loss - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113487262 chr13:113487266 synonymous SNV . 0 25 hm5C_associated_SNPs_60654 0 0 1 0 2 ATP11A chr13:113487337 5'GT 113487337 Upstream 72bp
chrX 72667507 72667507 1 + G T ACC 72667505 + 72667485 72667525 41 TGGCGGGTCGCTTGTCCCGACGGACGCAGGCGCCGCCAAGG TGGCGGGTCGCTTGTCCCGACGTACGCAGGCGCCGCCAAGG < 41bp 0.766694336346538 0.41810357557319 0.609948 0.18556929 prediction 0.533388672693075 Functional Loss - CDX4 ENSG00000131264 CDS Human protein_coding chrX:72667505 chrX:72667507 nonsynonymous SNV 0.008 3 23 hm5C_associated_SNPs_60655 0 0 0 0 1 CDX4 chrX:72667591 5'GT 72667591 Upstream 85bp
chr4 83375965 83375965 1 + G T UCEC 83375963 + 83375943 83375983 41 CCTCAGGGAGTGTGGAGGCACAGAAACTGTTATTCGGGCAT CCTCAGGGAGTGTGGAGGCACATAAACTGTTATTCGGGCAT < 41bp 0.86217253325052 0.59548411969071 0.4228378 0.23977348 prediction 0.533376827119619 Functional Loss - ENOPH1 ENSG00000145293 CDS Human protein_coding chr4:83375963 chr4:83375965 nonsynonymous SNV 0.901 4 23 hm5C_associated_SNPs_60656 0 0 1 0 2 ENOPH1 chr4:83375875 3'AG 83375875 Downstream 91bp
chr4 83375965 83375965 1 + G T UCEC 83375963 + 83375943 83375983 41 CCTCAGGGAGTGTGGAGGCACAGAAACTGTTATTCGGGCAT CCTCAGGGAGTGTGGAGGCACATAAACTGTTATTCGGGCAT < 41bp 0.86217253325052 0.59548411969071 0.4228378 0.23977348 prediction 0.533376827119619 Functional Loss - ENOPH1 ENSG00000145293 CDS Human protein_coding chr4:83375963 chr4:83375965 nonsynonymous SNV 0.901 4 23 hm5C_associated_SNPs_60656 0 0 1 0 2 ENOPH1 chr4:83376007 5'GT 83376007 Upstream 43bp
chr7 148851380 148851380 1 + G T PAAD 148851378 + 148851358 148851398 41 TTGGAGAACCTGCTGCGCAACAGGAACTTCTGGATCCTGCG TTGGAGAACCTGCTGCGCAACATGAACTTCTGGATCCTGCG < 41bp 0.777997247077995 0.511320762241945 0.87007654 0.2981456 prediction 0.533352969672102 Functional Loss - ZNF398 ENSG00000197024 CDS Human protein_coding chr7:148851378 chr7:148851380 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_60657 0 0 0 0 1 ZNF398 chr7:148851432 5'GT 148851432 Upstream 53bp
chr20 39741563 39741563 1 + A T SKCM 39741559 + 39741539 39741579 41 GCTGTAGCCCTGTACTTCATCGACAAGGTGAGAGCATCTTC GCTGTAGCCCTGTACTTCATCGACTAGGTGAGAGCATCTTC < 41bp 0.766672366549801 0.437346594775001 0.14619645 0.04484743 prediction 0.533344733099602 Functional Loss - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39741559 chr20:39741563 stopgain 0.995 1 25 hm5C_associated_SNPs_60658 0 0 1 0 1 TOP1 chr20:39741565 5'GT 39741565 Upstream 3bp
chr19 51729309 51729309 1 + G C LUSC 51729305 + 51729285 51729325 41 GTTCGCTGGAGCTGGTGTGACTACGGAGAGAACCATCCAGC GTTCGCTGGAGCTGGTGTGACTACCGAGAGAACCATCCAGC < 41bp 0.798468106911501 0.531803671849288 0.35098115 0.11724684 prediction 0.533328870124427 Functional Loss - CD33 ENSG00000105383 CDS Human protein_coding chr19:51729305 chr19:51729309 synonymous SNV . 0 25 hm5C_associated_SNPs_60659 0 0 0 0 1 CD33 chr19:51729337 5'GT 51729337 Upstream 29bp
chr6 4041049 4041049 1 + C T UCEC 4041047 + 4041027 4041067 41 ATCACGCTTGCGAAGGCGGTCTCGATCACGCGGTGGTCGTA ATCACGCTTGCGAAGGCGGTCTTGATCACGCGGTGGTCGTA < 41bp 0.807661847473918 0.54099788348367 0.52617985 0.28774396 prediction 0.533327927980497 Functional Loss - PRPF4B ENSG00000112739 CDS Human protein_coding chr6:4041047 chr6:4041049 stopgain 0.996 0 23 hm5C_associated_SNPs_60661 0 0 1 0 1 PRPF4B chr6:4041006 3'AG 4041006 Downstream 44bp
chr1 230807386 230807386 1 + G T UCEC 230807384 + 230807364 230807404 41 GTCACAGGAGGTGCCATCTCCAGGTAATTTAAACAACCCTG GTCACAGGAGGTGCCATCTCCATGTAATTTAAACAACCCTG < 41bp 0.766662526517946 0.424727577987208 0.78084165 0.34584484 prediction 0.533325053035892 Functional Loss - COG2 ENSG00000135775 CDS Human protein_coding chr1:230807384 chr1:230807386 nonsynonymous SNV 0.127 4 23 hm5C_associated_SNPs_60662 0 0 1 0 1 COG2 chr1:230807386 5'GT 230807386 Upstream 1bp
chr1 77876709 77876709 1 + G T LUSC 77876707 + 77876687 77876727 41 GATGAGGTGTTCTATGACATCAGCATGGCAGTTGACAACAA GATGAGGTGTTCTATGACATCATCATGGCAGTTGACAACAA < 41bp 0.843485678512507 0.576824123138555 0.1231696 0.065912336 prediction 0.533323110747903 Functional Loss - AK5 ENSG00000154027 CDS Human protein_coding chr1:77876707 chr1:77876709 nonsynonymous SNV 0.950 2 23 hm5C_associated_SNPs_60663 0 0 0 0 2 AK5 chr1:77876666 3'AG 77876666 Downstream 44bp
chr1 77876709 77876709 1 + G T LUSC 77876707 + 77876687 77876727 41 GATGAGGTGTTCTATGACATCAGCATGGCAGTTGACAACAA GATGAGGTGTTCTATGACATCATCATGGCAGTTGACAACAA < 41bp 0.843485678512507 0.576824123138555 0.1231696 0.065912336 prediction 0.533323110747903 Functional Loss - AK5 ENSG00000154027 CDS Human protein_coding chr1:77876707 chr1:77876709 nonsynonymous SNV 0.950 2 23 hm5C_associated_SNPs_60663 0 0 0 0 2 AK5 chr1:77876756 5'GT 77876756 Upstream 48bp
chr19 1207120 1207120 1 + G T LUAD 1207118 + 1207098 1207138 41 GGTGAAGGAGGTGCTGGACTCGGAGACGCTGTGCAGGAGGG GGTGAAGGAGGTGCTGGACTCGTAGACGCTGTGCAGGAGGG < 41bp 0.766660763372708 0.427126357605341 0.9195821 0.5794803 prediction 0.533321526745417 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1207118 chr19:1207120 stopgain 0.820 1 23 hm5C_associated_SNPs_60664 0 0 1 0 1 STK11 chr19:1207202 5'GT 1207202 Upstream 83bp
chr5 55202077 55202077 1 + G C LIHC 55202073 + 55202053 55202093 41 TCAGAGCCCACCACCCTTTCCTGGGAATCTGTGTCTCAGGC TCAGAGCCCACCACCCTTTCCTGGCAATCTGTGTCTCAGGC < 41bp 0.816550671847981 0.54989586985555 0.6850027 0.20947969 prediction 0.533309603984862 Functional Loss - IL31RA ENSG00000164509 CDS Human protein_coding chr5:55202073 chr5:55202077 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_60666 0 0 0 0 1 IL31RA chr5:55202116 5'GT 55202116 Upstream 40bp
chr5 7878394 7878394 1 + C T rs114053717 7878392 + 7878372 7878412 41 TCTGAATATTCCTGGTTTACCCCCAGAATATTTACAGGTAC TCTGAATATTCCTGGTTTACCCTCAGAATATTTACAGGTAC < 41bp 0.766623851076525 0.497416736462132 0.12942484 0.13040534 prediction 0.53324770215305 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7878392 chr5:7878394 nonsynonymous SNV 0.185 0 23 hm5C_associated_SNPs_60670 1 0 1 0 1 MTRR chr5:7878435 5'GT 7878435 Upstream 42bp
chr7 127230165 127230165 1 + G T UCEC 127230162 + 127230142 127230182 41 GTAATGACCGGGAGCGGGTCCAAGAATCTGCTGATGAACTC GTAATGACCGGGAGCGGGTCCAATAATCTGCTGATGAACTC < 41bp 0.905332410717615 0.638724798591248 0.58238965 0.24834073 prediction 0.533215224252734 Functional Loss - ARF5 ENSG00000004059 CDS Human protein_coding chr7:127230162 chr7:127230165 stopgain 0.999 1 24 hm5C_associated_SNPs_60673 0 0 1 1 1 ARF5 chr7:127230120 3'AG 127230120 Downstream 46bp
chr16 55703550 55703550 1 + G T LUAD 55703548 + 55703528 55703568 41 TGTTCTACATGGAGCTGGCTCTGGGACAGTACAACCGGGAG TGTTCTACATGGAGCTGGCTCTTGGACAGTACAACCGGGAG < 41bp 0.880432183232917 0.613842216742309 0.39464986 0.13386455 prediction 0.533179932981215 Functional Loss - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55703548 chr16:55703550 synonymous SNV . 0 23 hm5C_associated_SNPs_60675 0 0 0 0 2 SLC6A2 chr16:55703477 3'AG 55703477 Downstream 74bp
chr16 55703550 55703550 1 + G T LUAD 55703548 + 55703528 55703568 41 TGTTCTACATGGAGCTGGCTCTGGGACAGTACAACCGGGAG TGTTCTACATGGAGCTGGCTCTTGGACAGTACAACCGGGAG < 41bp 0.880432183232917 0.613842216742309 0.39464986 0.13386455 prediction 0.533179932981215 Functional Loss - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55703548 chr16:55703550 synonymous SNV . 0 23 hm5C_associated_SNPs_60675 0 0 0 0 2 SLC6A2 chr16:55703608 5'GT 55703608 Upstream 59bp
chr12 62931931 62931931 1 + G T SARC 62931928 + 62931908 62931948 41 TAGTGGCGGTGCCTTGAAACCTGGGAGAGCTGTAGAAGGAC TAGTGGCGGTGCCTTGAAACCTGTGAGAGCTGTAGAAGGAC < 41bp 0.766588367372068 0.401964237865924 0.83799255 0.3967933 prediction 0.533176734744136 Functional Loss - MON2 ENSG00000061987 CDS Human protein_coding chr12:62931928 chr12:62931931 nonsynonymous SNV 0.978 1 24 hm5C_associated_SNPs_60676 0 0 1 0 2 MON2 chr12:62931876 3'AG 62931876 Downstream 56bp
chr12 62931931 62931931 1 + G T SARC 62931928 + 62931908 62931948 41 TAGTGGCGGTGCCTTGAAACCTGGGAGAGCTGTAGAAGGAC TAGTGGCGGTGCCTTGAAACCTGTGAGAGCTGTAGAAGGAC < 41bp 0.766588367372068 0.401964237865924 0.83799255 0.3967933 prediction 0.533176734744136 Functional Loss - MON2 ENSG00000061987 CDS Human protein_coding chr12:62931928 chr12:62931931 nonsynonymous SNV 0.978 1 24 hm5C_associated_SNPs_60676 0 0 1 0 2 MON2 chr12:62931956 5'GT 62931956 Upstream 26bp
chr15 90805316 90805316 1 + G T THYM 90805314 + 90805294 90805334 41 ATTCTCACCTGGGAAAATACCGGCGGATCTACCCTGGGCCT ATTCTCACCTGGGAAAATACCGTCGGATCTACCCTGGGCCT < 41bp 0.886525974775762 0.61995720314345 0.90377724 0.43431392 prediction 0.533137543264623 Functional Loss - TTLL13P;NGRN ENSG00000213471 CDS Human protein_coding chr15:90805314 chr15:90805316 synonymous SNV . 0 23 hm5C_associated_SNPs_60681 0 0 0 0 1 TTLL13P;NGRN chr15:90805238 3'AG 90805238 Downstream 79bp
chr11 107965624 107965624 1 + G T LIHC 107965622 + 107965602 107965642 41 TTGTCTCACTTCCTACTGAACTGGAGGACTTGATACCGGAA TTGTCTCACTTCCTACTGAACTTGAGGACTTGATACCGGAA < 41bp 0.766563384722202 0.445507976094402 0.16929936 0.027952582 prediction 0.533126769444405 Functional Loss - CUL5 ENSG00000166266 CDS Human protein_coding chr11:107965622 chr11:107965624 synonymous SNV . 0 23 hm5C_associated_SNPs_60682 0 0 1 0 2 CUL5 chr11:107965539 3'AG 107965539 Downstream 86bp
chr11 107965624 107965624 1 + G T LIHC 107965622 + 107965602 107965642 41 TTGTCTCACTTCCTACTGAACTGGAGGACTTGATACCGGAA TTGTCTCACTTCCTACTGAACTTGAGGACTTGATACCGGAA < 41bp 0.766563384722202 0.445507976094402 0.16929936 0.027952582 prediction 0.533126769444405 Functional Loss - CUL5 ENSG00000166266 CDS Human protein_coding chr11:107965622 chr11:107965624 synonymous SNV . 0 23 hm5C_associated_SNPs_60682 0 0 1 0 2 CUL5 chr11:107965714 5'GT 107965714 Upstream 91bp
chr3 10167347 10167347 1 + G T UCEC 10167344 + 10167324 10167364 41 TCAAGACTTGCAACACTAAACGAGAAATTGACAGCCCTTGA TCAAGACTTGCAACACTAAACGATAAATTGACAGCCCTTGA < 41bp 0.880358517542651 0.613805289199012 0.42697594 0.118124455 prediction 0.533106456687278 Functional Loss - BRK1 ENSG00000254999 CDS Human protein_coding chr3:10167344 chr3:10167347 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_60683 0 0 1 0 2 BRK1 chr3:10167310 3'AG 10167310 Downstream 38bp
chr3 10167347 10167347 1 + G T UCEC 10167344 + 10167324 10167364 41 TCAAGACTTGCAACACTAAACGAGAAATTGACAGCCCTTGA TCAAGACTTGCAACACTAAACGATAAATTGACAGCCCTTGA < 41bp 0.880358517542651 0.613805289199012 0.42697594 0.118124455 prediction 0.533106456687278 Functional Loss - BRK1 ENSG00000254999 CDS Human protein_coding chr3:10167344 chr3:10167347 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_60683 0 0 1 0 2 BRK1 chr3:10167392 5'GT 10167392 Upstream 46bp
chr6 35199555 35199555 1 + A C SKCM 35199551 + 35199531 35199571 41 GGCTGTCAGCAGAGCTGTGTCAACATGATGGGCAGCTATGA GGCTGTCAGCAGAGCTGTGTCAACCTGATGGGCAGCTATGA < 41bp 0.766535077008632 0.349667316827965 0.1692549 0.21947697 prediction 0.533070154017265 Functional Loss - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35199551 chr6:35199555 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_60685 0 0 0 0 2 SCUBE3 chr6:35199502 3'AG 35199502 Downstream 54bp
chr6 35199555 35199555 1 + A C SKCM 35199551 + 35199531 35199571 41 GGCTGTCAGCAGAGCTGTGTCAACATGATGGGCAGCTATGA GGCTGTCAGCAGAGCTGTGTCAACCTGATGGGCAGCTATGA < 41bp 0.766535077008632 0.349667316827965 0.1692549 0.21947697 prediction 0.533070154017265 Functional Loss - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35199551 chr6:35199555 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_60685 0 0 0 0 2 SCUBE3 chr6:35199636 5'GT 35199636 Upstream 82bp
chr10 96454702 96454702 1 + G T LUSC 96454700 + 96454680 96454720 41 CCTGTGATCCCACTTTCATCCTGGGCTGTGCTCCCTGCAAT CCTGTGATCCCACTTTCATCCTTGGCTGTGCTCCCTGCAAT < 41bp 0.766525551456146 0.425651159170695 0.4650064 0.09103361 prediction 0.533051102912291 Functional Loss - CYP2C18 ENSG00000108242 CDS Human protein_coding chr10:96454700 chr10:96454702 synonymous SNV . 0 23 hm5C_associated_SNPs_60688 0 0 0 0 1 CYP2C18 chr10:96454674 3'AG 96454674 Downstream 29bp
chr19 16952596 16952596 1 + C T COAD 16952594 + 16952574 16952614 41 GTCAGGAGAATTCGCACAACCACGGGGACGGTGCAGAGGAC GTCAGGAGAATTCGCACAACCATGGGGACGGTGCAGAGGAC < 41bp 0.766728356173943 0.500206778472046 0.6555408 0.5970486 prediction 0.533043155403794 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16952594 chr19:16952596 synonymous SNV . 0 23 hm5C_associated_SNPs_60689 0 0 1 0 1 SIN3B chr19:16952579 3'AG 16952579 Downstream 18bp
chr3 17051565 17051565 1 + G C BRCA 17051561 + 17051541 17051581 41 TCCGCAGATGTTGCAAACATCTGGGTTACAGGACTGCGGTA TCCGCAGATGTTGCAAACATCTGGCTTACAGGACTGCGGTA < 41bp 0.787987706169263 0.52146939399915 0.8864448 0.6013142 prediction 0.533036624340225 Functional Loss - PLCL2 ENSG00000154822 CDS Human protein_coding chr3:17051561 chr3:17051565 nonsynonymous SNV 0.979 3 25 hm5C_associated_SNPs_60690 0 0 1 0 1 PLCL2 chr3:17051578 5'GT 17051578 Upstream 14bp
chr20 42087030 42087030 1 + G T HNSC 42087028 + 42087008 42087048 41 TTCGTGGAGTTCGAGGACTCCCGCGACGCCGACGACGCCGT TTCGTGGAGTTCGAGGACTCCCTCGACGCCGACGACGCCGT < 41bp 0.766488517385385 0.426299151331369 0.19582376 0.114271134 prediction 0.53297703477077 Functional Loss - SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42087028 chr20:42087030 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_60696 0 0 1 0 1 SRSF6 chr20:42087001 3'AG 42087001 Downstream 30bp
chr16 14755867 14755867 1 + C T UCEC 14755865 + 14755845 14755885 41 ACCTTCCTACCTTTCATCCACACCATCTGCCCTCTGCAAGA ACCTTCCTACCTTTCATCCACATCATCTGCCCTCTGCAAGA < 41bp 0.766483794443006 0.480669485839134 0.010303587 0.025467157 prediction 0.532967588886011 Functional Loss - BFAR ENSG00000103429 CDS Human protein_coding chr16:14755865 chr16:14755867 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_60699 0 0 1 0 1 BFAR chr16:14755922 5'GT 14755922 Upstream 56bp
chr19 58757774 58757774 1 + G T COAD 58757771 + 58757751 58757791 41 CGAGAGGTGACACTGGAGACCTGGGAGCATATTGTCTCCCT CGAGAGGTGACACTGGAGACCTGTGAGCATATTGTCTCCCT < 41bp 0.847502446721144 0.581034315057218 0.3295455 0.09118885 prediction 0.532936263327853 Functional Loss - ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58757771 chr19:58757774 nonsynonymous SNV 0.062 0 24 hm5C_associated_SNPs_60700 0 0 1 0 1 ZNF544 chr19:58757793 5'GT 58757793 Upstream 20bp
chr3 50145675 50145675 1 + A T UCEC 50145671 + 50145651 50145691 41 GGACTTTTCTTCAGTATTCACAGGATTATCAGCAGTTTTAT GGACTTTTCTTCAGTATTCACAGGTTTATCAGCAGTTTTAT < 41bp 0.766455214374313 0.464175236480563 0.41383323 0.5066863 prediction 0.532910428748625 Functional Loss - RBM5 ENSG00000003756 CDS Human protein_coding chr3:50145671 chr3:50145675 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_60701 0 0 1 0 2 RBM5 chr3:50145665 3'AG 50145665 Downstream 11bp
chr3 50145675 50145675 1 + A T UCEC 50145671 + 50145651 50145691 41 GGACTTTTCTTCAGTATTCACAGGATTATCAGCAGTTTTAT GGACTTTTCTTCAGTATTCACAGGTTTATCAGCAGTTTTAT < 41bp 0.766455214374313 0.464175236480563 0.41383323 0.5066863 prediction 0.532910428748625 Functional Loss - RBM5 ENSG00000003756 CDS Human protein_coding chr3:50145671 chr3:50145675 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_60701 0 0 1 0 2 RBM5 chr3:50145737 5'GT 50145737 Upstream 63bp
chr2 103148809 103148809 1 + G T LUAD 103148807 + 103148787 103148827 41 AGATGATGACAGCAGTGATCCAGGATCCCCATCCATCACGT AGATGATGACAGCAGTGATCCATGATCCCCATCCATCACGT < 41bp 0.863923608420093 0.597470524950245 0.5094865 0.03566003 prediction 0.532906166939695 Functional Loss - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103148807 chr2:103148809 stopgain 0.058 0 23 hm5C_associated_SNPs_60703 0 0 0 0 1 SLC9A4 chr2:103148789 3'AG 103148789 Downstream 21bp
chr16 67070607 67070607 1 + G T OV 67070605 + 67070585 67070625 41 CGGCCAGCTGGCAGGGAGAACAGCGACAAACACCTAGCCGA CGGCCAGCTGGCAGGGAGAACATCGACAAACACCTAGCCGA < 41bp 0.766449067764565 0.420265568546839 0.83333504 0.34442353 prediction 0.532898135529129 Functional Loss - CBFB ENSG00000067955 CDS Human protein_coding chr16:67070605 chr16:67070607 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_60704 0 0 1 0 2 CBFB chr16:67070542 3'AG 67070542 Downstream 66bp
chr16 67070607 67070607 1 + G T OV 67070605 + 67070585 67070625 41 CGGCCAGCTGGCAGGGAGAACAGCGACAAACACCTAGCCGA CGGCCAGCTGGCAGGGAGAACATCGACAAACACCTAGCCGA < 41bp 0.766449067764565 0.420265568546839 0.83333504 0.34442353 prediction 0.532898135529129 Functional Loss - CBFB ENSG00000067955 CDS Human protein_coding chr16:67070605 chr16:67070607 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_60704 0 0 1 0 2 CBFB chr16:67070658 5'GT 67070658 Upstream 52bp
chr5 40681108 40681108 1 + G T UCEC 40681105 + 40681085 40681125 41 CAGCCACTATCATGTCCACTCCCGGGGTCAATTCGTCCGCC CAGCCACTATCATGTCCACTCCCTGGGTCAATTCGTCCGCC < 41bp 0.766434598262895 0.377007075334766 0.77076244 0.3080375 prediction 0.53286919652579 Functional Loss - PTGER4 ENSG00000171522 CDS Human protein_coding chr5:40681105 chr5:40681108 nonsynonymous SNV 0.286 1 24 hm5C_associated_SNPs_60708 0 0 0 0 1 PTGER4 chr5:40681053 3'AG 40681053 Downstream 56bp
chr5 156670710 156670710 1 + G T LUAD 156670707 + 156670687 156670727 41 GGCAATTTGGGTTGGTGCATCTGGGCTACTGGCTCAACAAG GGCAATTTGGGTTGGTGCATCTGTGCTACTGGCTCAACAAG < 41bp 0.766433737974884 0.36840339615018 0.8810327 0.25651184 prediction 0.532867475949769 Functional Loss - ITK ENSG00000113263 CDS Human protein_coding chr5:156670707 chr5:156670710 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_60709 0 0 0 0 2 ITK chr5:156670633 3'AG 156670633 Downstream 78bp
chr5 156670710 156670710 1 + G T LUAD 156670707 + 156670687 156670727 41 GGCAATTTGGGTTGGTGCATCTGGGCTACTGGCTCAACAAG GGCAATTTGGGTTGGTGCATCTGTGCTACTGGCTCAACAAG < 41bp 0.766433737974884 0.36840339615018 0.8810327 0.25651184 prediction 0.532867475949769 Functional Loss - ITK ENSG00000113263 CDS Human protein_coding chr5:156670707 chr5:156670710 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_60709 0 0 0 0 2 ITK chr5:156670804 5'GT 156670804 Upstream 95bp
chr2 238647924 238647924 1 + G T UCEC 238647921 + 238647901 238647941 41 CTCCAGCTCCCGCGCCTCCTCCAGGGCCAGCTCGGCCCGGG CTCCAGCTCCCGCGCCTCCTCCATGGCCAGCTCGGCCCGGG < 41bp 0.766428199972383 0.389543763050127 0.9320284 0.34117347 prediction 0.532856399944766 Functional Loss - LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238647921 chr2:238647924 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_60711 0 0 0 0 2 LRRFIP1 chr2:238647875 3'AG 238647875 Downstream 50bp
chr2 238647924 238647924 1 + G T UCEC 238647921 + 238647901 238647941 41 CTCCAGCTCCCGCGCCTCCTCCAGGGCCAGCTCGGCCCGGG CTCCAGCTCCCGCGCCTCCTCCATGGCCAGCTCGGCCCGGG < 41bp 0.766428199972383 0.389543763050127 0.9320284 0.34117347 prediction 0.532856399944766 Functional Loss - LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238647921 chr2:238647924 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_60711 0 0 0 0 2 LRRFIP1 chr2:238647952 5'GT 238647952 Upstream 29bp
chrX 99920572 99920572 1 + C T CESC 99920570 + 99920550 99920590 41 CTGAGCCTGGCTCTCACTTTCCCGAAGGAGAGCATGTGATT CTGAGCCTGGCTCTCACTTTCCTGAAGGAGAGCATGTGATT < 41bp 0.766427614549405 0.481220867121582 0.6272939 0.119324 prediction 0.53285522909881 Functional Loss - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99920570 chrX:99920572 synonymous SNV . 0 23 hm5C_associated_SNPs_60712 0 0 0 0 1 SRPX2 chrX:99920654 5'GT 99920654 Upstream 83bp
chr17 79496338 79496338 1 + G T PRAD 79496335 + 79496315 79496355 41 ATCTGGAGGAGAGTCACCCACAGGTGGTGCTGGTGGCTGCC ATCTGGAGGAGAGTCACCCACAGTTGGTGCTGGTGGCTGCC < 41bp 0.766423921095983 0.375401415190926 0.84393114 0.28523818 prediction 0.532847842191966 Functional Loss - FSCN2 ENSG00000186765 CDS Human protein_coding chr17:79496335 chr17:79496338 nonsynonymous SNV 0.970 3 24 hm5C_associated_SNPs_60713 0 0 0 0 1 FSCN2 chr17:79496383 5'GT 79496383 Upstream 46bp
chr3 52741778 52741778 1 + G C LUAD 52741777 + 52741757 52741797 41 GTTCAAGAATCAAGCACAGACGACAAGAAACCAGGGGAAAG GTTCAAGAATCAAGCACAGACCACAAGAAACCAGGGGAAAG < 41bp 0.808328901959945 0.541905464571055 0.3250445 0.19979915 prediction 0.532846874777779 Functional Loss - SPCS1 ENSG00000114902 CDS Human protein_coding chr3:52741777 chr3:52741778 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_60714 0 0 1 0 1 SPCS1 chr3:52741703 3'AG 52741703 Downstream 76bp
chr11 34153038 34153038 1 + C T OV 34153036 + 34153016 34153056 41 CCTGGATTGCCTCAACATCACTCGGATAGTCTCAGGCTGCC CCTGGATTGCCTCAACATCACTTGGATAGTCTCAGGCTGCC < 41bp 0.76642218410488 0.496608291552493 0.3097099 0.4103406 prediction 0.532844368209759 Functional Loss - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34153036 chr11:34153038 nonsynonymous SNV 0.800 2 23 hm5C_associated_SNPs_60716 0 0 1 0 1 NAT10 chr11:34153078 5'GT 34153078 Upstream 41bp
chr5 115469851 115469851 1 + C T UCEC 115469849 + 115469829 115469869 41 CTCCTCAAGCTGTGTTACAACTCGGAGTGAACAATGAAGAT CTCCTCAAGCTGTGTTACAACTTGGAGTGAACAATGAAGAT < 41bp 0.766418493355936 0.490314348701461 0.051384896 0.06339517 prediction 0.532836986711871 Functional Loss - COMMD10 ENSG00000145781 CDS Human protein_coding chr5:115469849 chr5:115469851 synonymous SNV . 0 23 hm5C_associated_SNPs_60717 0 0 1 0 2 COMMD10 chr5:115469765 3'AG 115469765 Downstream 87bp
chr5 115469851 115469851 1 + C T UCEC 115469849 + 115469829 115469869 41 CTCCTCAAGCTGTGTTACAACTCGGAGTGAACAATGAAGAT CTCCTCAAGCTGTGTTACAACTTGGAGTGAACAATGAAGAT < 41bp 0.766418493355936 0.490314348701461 0.051384896 0.06339517 prediction 0.532836986711871 Functional Loss - COMMD10 ENSG00000145781 CDS Human protein_coding chr5:115469849 chr5:115469851 synonymous SNV . 0 23 hm5C_associated_SNPs_60717 0 0 1 0 2 COMMD10 chr5:115469875 5'GT 115469875 Upstream 25bp
chr18 33750155 33750155 1 + C T CESC 33750153 + 33750133 33750173 41 CTGCCCAGTGCTCCACCCTTCTCAACGGTCAGTCTCTGTGT CTGCCCAGTGCTCCACCCTTCTTAACGGTCAGTCTCTGTGT < 41bp 0.766416505358438 0.491438380495591 0.2788625 0.07292053 prediction 0.532833010716875 Functional Loss - ELP2 ENSG00000134759 CDS Human protein_coding chr18:33750153 chr18:33750155 stopgain 0.077 0 23 hm5C_associated_SNPs_60718 0 0 1 0 1 ELP2 chr18:33750159 5'GT 33750159 Upstream 5bp
chr20 44444364 44444364 1 + C T SKCM 44444362 + 44444342 44444382 41 GATGTCAGGACCATTCTGCTCTCCATCCAGAGCCTTCTAGG GATGTCAGGACCATTCTGCTCTTCATCCAGAGCCTTCTAGG < 41bp 0.801561923926461 0.535145740244708 0.94086236 0.047245234 prediction 0.532832367363506 Functional Loss - UBE2C ENSG00000175063 CDS Human protein_coding chr20:44444362 chr20:44444364 nonsynonymous SNV 0.973 4 23 hm5C_associated_SNPs_60719 0 0 1 0 1 UBE2C chr20:44444384 5'GT 44444384 Upstream 21bp
chr7 7636009 7636009 1 + C T STAD 7636007 + 7635987 7636027 41 TCACCAACGAAATCTAAAGTCACAAGTTGTCCTGGCTGTCG TCACCAACGAAATCTAAAGTCATAAGTTGTCCTGGCTGTCG < 41bp 0.78253524781174 0.516126948041885 0.12514144 0.17332715 prediction 0.53281659953971 Functional Loss - MIOS ENSG00000164654 CDS Human protein_coding chr7:7636007 chr7:7636009 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_60721 0 0 0 0 1 MIOS chr7:7636092 5'GT 7636092 Upstream 84bp
chr10 105883512 105883512 1 + G T UCEC 105883509 + 105883489 105883529 41 TAGAGAAAGATTAAGGAAAACAAGATTTTCATTTAATTCCT TAGAGAAAGATTAAGGAAAACAATATTTTCATTTAATTCCT < 41bp 0.766382582510155 0.404352532029279 0.15966189 0.09215233 prediction 0.53276516502031 Functional Loss - SFR1 ENSG00000156384 CDS Human protein_coding chr10:105883509 chr10:105883512 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_60726 0 0 1 0 1 SFR1 chr10:105883472 3'AG 105883472 Downstream 41bp
chr5 131714157 131714157 1 + G T UVM 131714155 + 131714135 131714175 41 GCTGTTGGGCTCCTTCATTTCAGGGCAGCTGTCAGACAGGT GCTGTTGGGCTCCTTCATTTCATGGCAGCTGTCAGACAGGT < 41bp 0.881978210201017 0.615607816481258 0.88174796 0.17387775 prediction 0.532740787439517 Functional Loss - SLC22A5 ENSG00000197375 CDS Human protein_coding chr5:131714155 chr5:131714157 nonsynonymous SNV 0.977 4 23 hm5C_associated_SNPs_60729 0 0 1 0 2 SLC22A5 chr5:131714070 3'AG 131714070 Downstream 88bp
chr5 131714157 131714157 1 + G T UVM 131714155 + 131714135 131714175 41 GCTGTTGGGCTCCTTCATTTCAGGGCAGCTGTCAGACAGGT GCTGTTGGGCTCCTTCATTTCATGGCAGCTGTCAGACAGGT < 41bp 0.881978210201017 0.615607816481258 0.88174796 0.17387775 prediction 0.532740787439517 Functional Loss - SLC22A5 ENSG00000197375 CDS Human protein_coding chr5:131714155 chr5:131714157 nonsynonymous SNV 0.977 4 23 hm5C_associated_SNPs_60729 0 0 1 0 2 SLC22A5 chr5:131714173 5'GT 131714173 Upstream 17bp
chr5 1242871 1242871 1 + T C LUAD 1242870 + 1242850 1242890 41 GACTTCCCAGAGCAGAGCATCTCCAGGGACGACTACCCAGC GACTTCCCAGAGCAGAGCATCCCCAGGGACGACTACCCAGC < 41bp 0.76636747774239 0.497798167124129 0.9475782 0.075532615 prediction 0.532734955484779 Functional Loss - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1242870 chr5:1242871 nonsynonymous SNV 0.943 1 22 hm5C_associated_SNPs_60731 0 0 0 0 1 SLC6A18 chr5:1242822 3'AG 1242822 Downstream 50bp
chr5 161292763 161292763 1 + C T GBM 161292761 + 161292741 161292781 41 GTGAAGACTGATATCTTCGTCACCAGTTTCGGACCCGTTTC GTGAAGACTGATATCTTCGTCATCAGTTTCGGACCCGTTTC < 41bp 0.798455279807001 0.53209626609517 0.08650184 0.082842976 prediction 0.532718027423661 Functional Loss - GABRA1 ENSG00000022355 CDS Human protein_coding chr5:161292761 chr5:161292763 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_60733 0 0 0 0 2 GABRA1 chr5:161292727 3'AG 161292727 Downstream 37bp
chr5 161292763 161292763 1 + C T GBM 161292761 + 161292741 161292781 41 GTGAAGACTGATATCTTCGTCACCAGTTTCGGACCCGTTTC GTGAAGACTGATATCTTCGTCATCAGTTTCGGACCCGTTTC < 41bp 0.798455279807001 0.53209626609517 0.08650184 0.082842976 prediction 0.532718027423661 Functional Loss - GABRA1 ENSG00000022355 CDS Human protein_coding chr5:161292761 chr5:161292763 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_60733 0 0 0 0 2 GABRA1 chr5:161292794 5'GT 161292794 Upstream 32bp
chr12 101005850 101005850 1 + G C ACC 101005849 + 101005829 101005869 41 TTCTTTGCTCGGGACAATACCGCAAACTTCCTTCACTGGTG TTCTTTGCTCGGGACAATACCCCAAACTTCCTTCACTGGTG < 41bp 0.835227966238243 0.568872602909932 0.03733042 0.120176464 prediction 0.532710726656621 Functional Loss - GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:101005849 chr12:101005850 nonsynonymous SNV 0.986 4 22 hm5C_associated_SNPs_60734 0 0 1 0 2 GAS2L3 chr12:101005778 3'AG 101005778 Downstream 73bp
chr12 101005850 101005850 1 + G C ACC 101005849 + 101005829 101005869 41 TTCTTTGCTCGGGACAATACCGCAAACTTCCTTCACTGGTG TTCTTTGCTCGGGACAATACCCCAAACTTCCTTCACTGGTG < 41bp 0.835227966238243 0.568872602909932 0.03733042 0.120176464 prediction 0.532710726656621 Functional Loss - GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:101005849 chr12:101005850 nonsynonymous SNV 0.986 4 22 hm5C_associated_SNPs_60734 0 0 1 0 2 GAS2L3 chr12:101005919 5'GT 101005919 Upstream 70bp
chr12 6884443 6884443 1 + G T SKCM 6884441 + 6884421 6884461 41 GTTTTCTTTTCTCTTCAGGTCTGGAGCCCCCAACTCCCTTG GTTTTCTTTTCTCTTCAGGTCTTGAGCCCCCAACTCCCTTG < 41bp 0.872956847551273 0.606602672653434 0.0409171 0.059592158 prediction 0.532708349795678 Functional Loss - LAG3 ENSG00000089692 CDS Human protein_coding chr12:6884441 chr12:6884443 synonymous SNV . 0 23 hm5C_associated_SNPs_60735 0 0 0 0 1 LAG3 chr12:6884439 3'AG 6884439 Downstream 5bp
chr5 176813532 176813532 1 + C T UCEC 176813530 + 176813510 176813550 41 CTGGTGCAGAGCTCCAGCACCTCCACATCCATCATCGTCAG CTGGTGCAGAGCTCCAGCACCTTCACATCCATCATCGTCAG < 41bp 0.766348370914268 0.487254427041235 0.91925466 0.044528723 prediction 0.532696741828537 Functional Loss - SLC34A1 ENSG00000131183 CDS Human protein_coding chr5:176813530 chr5:176813532 nonsynonymous SNV 0.860 5 23 hm5C_associated_SNPs_60737 0 0 0 0 1 SLC34A1 chr5:176813567 5'GT 176813567 Upstream 36bp
chr5 428000 428000 1 + C T BRCA 427998 + 427978 428018 41 GTCAGGAGCCATGCTCCCGCCGCGGCTGTCGCTGTTCTGCA GTCAGGAGCCATGCTCCCGCCGTGGCTGTCGCTGTTCTGCA < 41bp 0.781059433156152 0.51472651159675 0.5955089 0.5316217 prediction 0.532665843118804 Functional Loss - AHRR ENSG00000063438 CDS Human protein_coding chr5:427998 chr5:428000 nonsynonymous SNV 0.002 4 23 hm5C_associated_SNPs_60739 0 0 0 0 1 AHRR chr5:427922 3'AG 427922 Downstream 79bp
chr3 127395161 127395161 1 + G T COAD 127395158 + 127395138 127395178 41 GTGACGTGGTCTTTGTAGTACACGGGAAGCCATTCCGGGTG GTGACGTGGTCTTTGTAGTACACTGGAAGCCATTCCGGGTG < 41bp 0.794722399802362 0.52839021889566 0.49685267 0.31817997 prediction 0.532664361813403 Functional Loss - ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127395158 chr3:127395161 nonsynonymous SNV 0.224 4 24 hm5C_associated_SNPs_60740 0 0 1 0 1 ABTB1 chr3:127395115 3'AG 127395115 Downstream 47bp
chr3 148563225 148563225 1 + C T UCEC 148563223 + 148563203 148563243 41 TTTTCCAGAAATTGGAGCCTCTCGAAACCCCTGTGATGAAA TTTTCCAGAAATTGGAGCCTCTTGAAACCCCTGTGATGAAA < 41bp 0.766327093409666 0.487301919318154 0.92734814 0.2817127 prediction 0.532654186819332 Functional Loss - CPB1 ENSG00000153002 CDS Human protein_coding chr3:148563223 chr3:148563225 stopgain 0.215 0 23 hm5C_associated_SNPs_60741 0 0 0 0 1 CPB1 chr3:148563211 3'AG 148563211 Downstream 15bp
chr19 13865136 13865136 1 + C T SKCM 13865134 + 13865114 13865154 41 AGGGGTCAACAAGTACTATCCTCCAGACTTCAACCCTGAGA AGGGGTCAACAAGTACTATCCTTCAGACTTCAACCCTGAGA < 41bp 0.797001421066 0.530691274267091 0.9415566 0.14744872 prediction 0.532620293597818 Functional Loss - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13865134 chr19:13865136 nonsynonymous SNV 0.855 4 23 hm5C_associated_SNPs_60743 0 0 1 0 1 CCDC130 chr19:13865156 5'GT 13865156 Upstream 21bp
chr8 96060700 96060700 1 + G T GBM 96060697 + 96060677 96060717 41 CCACACAGCATGGTGTTTCACAAGAGGACTTTCTACGGAGG CCACACAGCATGGTGTTTCACAATAGGACTTTCTACGGAGG < 41bp 0.766302167723445 0.388690932532133 0.78895026 0.119002014 prediction 0.532604335446891 Functional Loss - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96060697 chr8:96060700 stopgain 0.998 0 24 hm5C_associated_SNPs_60745 0 0 1 0 2 NDUFAF6 chr8:96060685 3'AG 96060685 Downstream 16bp
chr8 96060700 96060700 1 + G T GBM 96060697 + 96060677 96060717 41 CCACACAGCATGGTGTTTCACAAGAGGACTTTCTACGGAGG CCACACAGCATGGTGTTTCACAATAGGACTTTCTACGGAGG < 41bp 0.766302167723445 0.388690932532133 0.78895026 0.119002014 prediction 0.532604335446891 Functional Loss - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96060697 chr8:96060700 stopgain 0.998 0 24 hm5C_associated_SNPs_60745 0 0 1 0 2 NDUFAF6 chr8:96060786 5'GT 96060786 Upstream 87bp
chr1 53073984 53073984 1 + C T BLCA 53073982 + 53073962 53074002 41 CTTCTGGAAGTACCTAGTAGCCCCAGATGGAAAGGTGGTAG CTTCTGGAAGTACCTAGTAGCCTCAGATGGAAAGGTGGTAG < 41bp 0.768243503505351 0.501943259236923 0.55380696 0.15588728 prediction 0.532600488536855 Functional Loss - GPX7 ENSG00000116157 CDS Human protein_coding chr1:53073982 chr1:53073984 nonsynonymous SNV 0.949 1 23 hm5C_associated_SNPs_60747 0 0 0 0 1 GPX7 chr1:53073934 3'AG 53073934 Downstream 51bp
chr6 26373298 26373298 1 + G T SARC 26373296 + 26373276 26373316 41 GATGAAAGAAATGGGATATGCTGCAACAGAGCGGGAAATAA GATGAAAGAAATGGGATATGCTTCAACAGAGCGGGAAATAA < 41bp 0.766298832630716 0.450020065902706 0.08435857 0.084501535 prediction 0.532597665261433 Functional Loss - BTN3A2 ENSG00000186470 CDS Human protein_coding chr6:26373296 chr6:26373298 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_60748 0 0 1 0 1 BTN3A2 chr6:26373325 5'GT 26373325 Upstream 28bp
chr8 97614732 97614732 1 + G T STAD 97614730 + 97614710 97614750 41 AAACCACGACGCTGAATATACAGAACAAGATACCTGCTCAG AAACCACGACGCTGAATATACATAACAAGATACCTGCTCAG < 41bp 0.766248877025376 0.431893575559576 0.12082207 0.026030868 prediction 0.532497754050752 Functional Loss - SDC2 ENSG00000169439 CDS Human protein_coding chr8:97614730 chr8:97614732 nonsynonymous SNV 0.036 0 23 hm5C_associated_SNPs_60752 0 0 1 0 1 SDC2 chr8:97614756 5'GT 97614756 Upstream 25bp
chr9 93637019 93637019 1 + G C ACC 93637015 + 93636995 93637035 41 GAGAGCCCCTACGCGGACCCCGAGGAGATCAGGCCCAAGGA GAGAGCCCCTACGCGGACCCCGAGCAGATCAGGCCCAAGGA < 41bp 0.766240752850826 0.476979386361531 0.8966557 0.23491934 prediction 0.532481505701653 Functional Loss - SYK ENSG00000165025 CDS Human protein_coding chr9:93637015 chr9:93637019 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_60753 0 0 0 0 1 SYK chr9:93636954 3'AG 93636954 Downstream 66bp
chr10 133955458 133955458 1 + G C ESCA 133955457 + 133955437 133955477 41 AGGAGACGGAGCTGAGGTTCCGGCAGCTGACCATGGAGTAC AGGAGACGGAGCTGAGGTTCCCGCAGCTGACCATGGAGTAC < 41bp 0.846211592058508 0.579970889265644 0.84378034 0.73854077 prediction 0.532481405585728 Functional Loss - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133955457 chr10:133955458 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_60754 0 0 0 0 2 JAKMIP3 chr10:133955424 3'AG 133955424 Downstream 35bp
chr10 133955458 133955458 1 + G C ESCA 133955457 + 133955437 133955477 41 AGGAGACGGAGCTGAGGTTCCGGCAGCTGACCATGGAGTAC AGGAGACGGAGCTGAGGTTCCCGCAGCTGACCATGGAGTAC < 41bp 0.846211592058508 0.579970889265644 0.84378034 0.73854077 prediction 0.532481405585728 Functional Loss - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133955457 chr10:133955458 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_60754 0 0 0 0 2 JAKMIP3 chr10:133955552 5'GT 133955552 Upstream 95bp
chrX 107381072 107381072 1 + G T SARC 107381070 + 107381050 107381090 41 CCTTCCCTTGAGTGCTGACACAGCTGGTGACAGGCCTCCCG CCTTCCCTTGAGTGCTGACACATCTGGTGACAGGCCTCCCG < 41bp 0.766236798085676 0.421736655488807 0.3783843 0.1793617 prediction 0.532473596171352 Functional Loss - ATG4A ENSG00000101844 CDS Human protein_coding chrX:107381070 chrX:107381072 nonsynonymous SNV 0.046 0 23 hm5C_associated_SNPs_60755 0 0 1 0 1 ATG4A chrX:107381034 3'AG 107381034 Downstream 39bp
chr16 67859866 67859866 1 + A C UCEC 67859862 + 67859842 67859882 41 ACGAGGAGGTTCGCAAGGAGCATGAGATCCTCATGCAGCTG ACGAGGAGGTTCGCAAGGAGCATGCGATCCTCATGCAGCTG < 41bp 0.766233428767877 0.368382308843109 0.34743002 0.28337702 prediction 0.532466857535754 Functional Loss - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67859862 chr16:67859866 nonsynonymous SNV 0.179 0 25 hm5C_associated_SNPs_60756 0 0 0 0 1 TSNAXIP1 chr16:67859820 3'AG 67859820 Downstream 47bp
chr12 80645556 80645556 1 + G T LUSC 80645554 + 80645534 80645574 41 GCTGGCTACCCTATTCAAGACTGGAGAGATGACTTTCCAGC GCTGGCTACCCTATTCAAGACTTGAGAGATGACTTTCCAGC < 41bp 0.766231685224865 0.462335527880998 0.117075294 0.08911717 prediction 0.53246337044973 Functional Loss - OTOGL ENSG00000165899 CDS Human protein_coding chr12:80645554 chr12:80645556 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_60757 0 0 0 0 2 OTOGL chr12:80645473 3'AG 80645473 Downstream 84bp
chr12 80645556 80645556 1 + G T LUSC 80645554 + 80645534 80645574 41 GCTGGCTACCCTATTCAAGACTGGAGAGATGACTTTCCAGC GCTGGCTACCCTATTCAAGACTTGAGAGATGACTTTCCAGC < 41bp 0.766231685224865 0.462335527880998 0.117075294 0.08911717 prediction 0.53246337044973 Functional Loss - OTOGL ENSG00000165899 CDS Human protein_coding chr12:80645554 chr12:80645556 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_60757 0 0 0 0 2 OTOGL chr12:80645579 5'GT 80645579 Upstream 24bp
chr12 80645557 80645557 1 + G T LUSC 80645554 + 80645534 80645574 41 GCTGGCTACCCTATTCAAGACTGGAGAGATGACTTTCCAGC GCTGGCTACCCTATTCAAGACTGTAGAGATGACTTTCCAGC < 41bp 0.766231685224865 0.417749931658357 0.117075294 0.056504965 prediction 0.53246337044973 Functional Loss - OTOGL ENSG00000165899 CDS Human protein_coding chr12:80645554 chr12:80645557 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_60758 0 0 0 0 2 OTOGL chr12:80645473 3'AG 80645473 Downstream 85bp
chr12 80645557 80645557 1 + G T LUSC 80645554 + 80645534 80645574 41 GCTGGCTACCCTATTCAAGACTGGAGAGATGACTTTCCAGC GCTGGCTACCCTATTCAAGACTGTAGAGATGACTTTCCAGC < 41bp 0.766231685224865 0.417749931658357 0.117075294 0.056504965 prediction 0.53246337044973 Functional Loss - OTOGL ENSG00000165899 CDS Human protein_coding chr12:80645554 chr12:80645557 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_60758 0 0 0 0 2 OTOGL chr12:80645579 5'GT 80645579 Upstream 23bp
chr19 58905907 58905907 1 + G C LUAD 58905906 + 58905886 58905926 41 GCGCTCGTGAGGCTGCCTTCCGGAACATTAAGACCATTGCT GCGCTCGTGAGGCTGCCTTCCCGAACATTAAGACCATTGCT < 41bp 0.838328715301714 0.572098441744718 0.9138601 0.822386 prediction 0.532460547113993 Functional Loss - RPS5 ENSG00000083845 CDS Human protein_coding chr19:58905906 chr19:58905907 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_60760 0 0 1 0 2 RPS5 chr19:58905864 3'AG 58905864 Downstream 44bp
chr19 58905907 58905907 1 + G C LUAD 58905906 + 58905886 58905926 41 GCGCTCGTGAGGCTGCCTTCCGGAACATTAAGACCATTGCT GCGCTCGTGAGGCTGCCTTCCCGAACATTAAGACCATTGCT < 41bp 0.838328715301714 0.572098441744718 0.9138601 0.822386 prediction 0.532460547113993 Functional Loss - RPS5 ENSG00000083845 CDS Human protein_coding chr19:58905906 chr19:58905907 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_60760 0 0 1 0 2 RPS5 chr19:58905962 5'GT 58905962 Upstream 56bp
chr16 67410677 67410677 1 + C T CESC 67410675 + 67410655 67410695 41 TTTGGTAGTCCCGGCTCCTTCTCAGCCGAGGTGTTGCTCAC TTTGGTAGTCCCGGCTCCTTCTTAGCCGAGGTGTTGCTCAC < 41bp 0.766224003663637 0.482488857987645 0.123827666 0.08607665 prediction 0.532448007327273 Functional Loss - LRRC36 ENSG00000159708 CDS Human protein_coding chr16:67410675 chr16:67410677 stopgain 0.877 0 23 hm5C_associated_SNPs_60761 0 0 0 0 2 LRRC36 chr16:67410630 3'AG 67410630 Downstream 48bp
chr16 67410677 67410677 1 + C T CESC 67410675 + 67410655 67410695 41 TTTGGTAGTCCCGGCTCCTTCTCAGCCGAGGTGTTGCTCAC TTTGGTAGTCCCGGCTCCTTCTTAGCCGAGGTGTTGCTCAC < 41bp 0.766224003663637 0.482488857987645 0.123827666 0.08607665 prediction 0.532448007327273 Functional Loss - LRRC36 ENSG00000159708 CDS Human protein_coding chr16:67410675 chr16:67410677 stopgain 0.877 0 23 hm5C_associated_SNPs_60761 0 0 0 0 2 LRRC36 chr16:67410775 5'GT 67410775 Upstream 99bp
chr12 51237795 51237795 1 + G T SARC 51237793 + 51237773 51237813 41 GAGAGAGAGGTGGGTCCTCACAGCTGCCCACTGCACTAAAG GAGAGAGAGGTGGGTCCTCACATCTGCCCACTGCACTAAAG < 41bp 0.766215272093006 0.422852829263674 0.77468634 0.61381453 prediction 0.532430544186011 Functional Loss - TMPRSS12 ENSG00000186452 CDS Human protein_coding chr12:51237793 chr12:51237795 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_60763 0 0 0 0 1 TMPRSS12 chr12:51237820 5'GT 51237820 Upstream 26bp
chr17 9538823 9538823 1 + G T COAD 9538820 + 9538800 9538840 41 ATTAGGGTGAAGAGGAACAACGAGGAGTGTGTCACCGCCAG ATTAGGGTGAAGAGGAACAACGATGAGTGTGTCACCGCCAG < 41bp 0.910272633047329 0.644064162232294 0.9245815 0.7562723 prediction 0.53241694163007 Functional Loss - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9538820 chr17:9538823 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_60765 0 0 0 0 1 CFAP52 chr17:9538873 5'GT 9538873 Upstream 51bp
chr11 88961012 88961012 1 + G T LUAD 88961009 + 88960989 88961029 41 AGGATTTGCTAGTCCACTTACTGGGATAGCGGATGCCTCTC AGGATTTGCTAGTCCACTTACTGTGATAGCGGATGCCTCTC < 41bp 0.766205565853076 0.381984186099587 0.44597942 0.06478292 prediction 0.532411131706152 Functional Loss - TYR ENSG00000077498 CDS Human protein_coding chr11:88961009 chr11:88961012 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_60767 0 0 0 0 1 TYR chr11:88960991 3'AG 88960991 Downstream 22bp
chrX 65428052 65428052 1 + G T UCEC 65428049 + 65428029 65428069 41 CTGTGCATGCTCATGGAGTGCTAGAATCTACTACTGTCTGG CTGTGCATGCTCATGGAGTGCTATAATCTACTACTGTCTGG < 41bp 0.766193806704093 0.3827967633638 0.34308004 0.24575052 prediction 0.532387613408186 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65428049 chrX:65428052 stopgain 0.910 0 24 hm5C_associated_SNPs_60770 0 0 1 0 2 HEPH chrX:65427957 3'AG 65427957 Downstream 96bp
chrX 65428052 65428052 1 + G T UCEC 65428049 + 65428029 65428069 41 CTGTGCATGCTCATGGAGTGCTAGAATCTACTACTGTCTGG CTGTGCATGCTCATGGAGTGCTATAATCTACTACTGTCTGG < 41bp 0.766193806704093 0.3827967633638 0.34308004 0.24575052 prediction 0.532387613408186 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65428049 chrX:65428052 stopgain 0.910 0 24 hm5C_associated_SNPs_60770 0 0 1 0 2 HEPH chrX:65428088 5'GT 65428088 Upstream 37bp
chrX 11130219 11130219 1 + G T LUAD 11130217 + 11130197 11130237 41 CTGCTCCTGCTGTTGCAGTTCAGGCCTCAAATGCTTCAGCG CTGCTCCTGCTGTTGCAGTTCATGCCTCAAATGCTTCAGCG < 41bp 0.766157096496934 0.41070463447881 0.27631828 0.22291932 prediction 0.532314192993867 Functional Loss - HCCS ENSG00000004961 CDS Human protein_coding chrX:11130217 chrX:11130219 nonsynonymous SNV 0.909 2 23 hm5C_associated_SNPs_60772 0 0 1 0 2 HCCS chrX:11130139 3'AG 11130139 Downstream 81bp
chrX 11130219 11130219 1 + G T LUAD 11130217 + 11130197 11130237 41 CTGCTCCTGCTGTTGCAGTTCAGGCCTCAAATGCTTCAGCG CTGCTCCTGCTGTTGCAGTTCATGCCTCAAATGCTTCAGCG < 41bp 0.766157096496934 0.41070463447881 0.27631828 0.22291932 prediction 0.532314192993867 Functional Loss - HCCS ENSG00000004961 CDS Human protein_coding chrX:11130217 chrX:11130219 nonsynonymous SNV 0.909 2 23 hm5C_associated_SNPs_60772 0 0 1 0 2 HCCS chrX:11130280 5'GT 11130280 Upstream 62bp
chr1 93575797 93575797 1 + G T UCEC 93575795 + 93575775 93575815 41 TTCTCTAAACAGAGACTCTACAGGGGCAGGTAATTCACTGG TTCTCTAAACAGAGACTCTACATGGGCAGGTAATTCACTGG < 41bp 0.766148274063052 0.44831468922581 0.9084445 0.37584132 prediction 0.532296548126104 Functional Loss - MTF2 ENSG00000143033 CDS Human protein_coding chr1:93575795 chr1:93575797 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_60775 0 0 1 0 1 MTF2 chr1:93575803 5'GT 93575803 Upstream 7bp
chr2 220396815 220396815 1 + G T UCEC 220396812 + 220396792 220396832 41 AGCTGGGGTTCGGGGTGTCCCCAGGCTTCCAGACCTTTGTG AGCTGGGGTTCGGGGTGTCCCCATGCTTCCAGACCTTTGTG < 41bp 0.766143694354578 0.377557871038261 0.90543854 0.7087482 prediction 0.532287388709156 Functional Loss - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220396812 chr2:220396815 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_60776 0 0 1 0 2 ASIC4 chr2:220396723 3'AG 220396723 Downstream 93bp
chr2 220396815 220396815 1 + G T UCEC 220396812 + 220396792 220396832 41 AGCTGGGGTTCGGGGTGTCCCCAGGCTTCCAGACCTTTGTG AGCTGGGGTTCGGGGTGTCCCCATGCTTCCAGACCTTTGTG < 41bp 0.766143694354578 0.377557871038261 0.90543854 0.7087482 prediction 0.532287388709156 Functional Loss - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220396812 chr2:220396815 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_60776 0 0 1 0 2 ASIC4 chr2:220396850 5'GT 220396850 Upstream 36bp
chr9 126776374 126776374 1 + C T BLCA 126776372 + 126776352 126776392 41 TCAAGTGCTGCGAGTGCAAGCTCAACCTGGAGTCGGAGCTC TCAAGTGCTGCGAGTGCAAGCTTAACCTGGAGTCGGAGCTC < 41bp 0.78290979862034 0.516766320966269 0.09326002 0.050932974 prediction 0.532286955308142 Functional Loss - LHX2 ENSG00000106689 CDS Human protein_coding chr9:126776372 chr9:126776374 synonymous SNV . 0 23 hm5C_associated_SNPs_60777 0 0 0 0 1 LHX2 chr9:126776442 5'GT 126776442 Upstream 69bp
chr2 3392433 3392433 1 + A T LUSC 3392429 + 3392409 3392449 41 ACCATGCCGGGCCTCAGGTTCGACAACATCCAGGTGAGCCC ACCATGCCGGGCCTCAGGTTCGACTACATCCAGGTGAGCCC < 41bp 0.766134591461958 0.431336922537725 0.2982872 0.19972754 prediction 0.532269182923916 Functional Loss - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3392429 chr2:3392433 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_60779 0 0 1 0 1 TRAPPC12 chr2:3392441 5'GT 3392441 Upstream 9bp
chr17 18918396 18918396 1 + G C rs2074279 18918395 + 18918375 18918415 41 GATGATCGCAGTGATGCTGGCGGCGCTCATGTCGTCGCTGA GATGATCGCAGTGATGCTGGCCGCGCTCATGTCGTCGCTGA < 41bp 0.850063641124251 0.583933814520236 0.49459174 0.16517639 prediction 0.532259653208031 Functional Loss - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18918395 chr17:18918396 synonymous SNV . 0 22 hm5C_associated_SNPs_60780 0 0 0 0 1 SLC5A10 chr17:18918362 3'AG 18918362 Downstream 35bp
chr3 102196358 102196358 1 + G T LUSC 102196355 + 102196335 102196375 41 TGATATCAGGAATGGTCATTCTGGGAGTTACGAGCTTTTCT TGATATCAGGAATGGTCATTCTGTGAGTTACGAGCTTTTCT < 41bp 0.766128188542918 0.396590720784416 0.7591554 0.44582045 prediction 0.532256377085836 Functional Loss - ZPLD1 ENSG00000170044 CDS Human protein_coding chr3:102196355 chr3:102196358 stopgain 0.990 1 24 hm5C_associated_SNPs_60781 0 0 0 0 1 ZPLD1 chr3:102196287 3'AG 102196287 Downstream 72bp
chr5 5262857 5262857 1 + C T CESC 5262855 + 5262835 5262875 41 AATCCCAAGACACGACCTGTCACGGGGCTGGTGCCTTGCAA AATCCCAAGACACGACCTGTCATGGGGCTGGTGCCTTGCAA < 41bp 0.767952976917611 0.501825291934707 0.56778735 0.8747189 prediction 0.532255369965807 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5262855 chr5:5262857 nonsynonymous SNV 0.264 3 23 hm5C_associated_SNPs_60782 0 0 0 0 2 ADAMTS16 chr5:5262770 3'AG 5262770 Downstream 88bp
chr5 5262857 5262857 1 + C T CESC 5262855 + 5262835 5262875 41 AATCCCAAGACACGACCTGTCACGGGGCTGGTGCCTTGCAA AATCCCAAGACACGACCTGTCATGGGGCTGGTGCCTTGCAA < 41bp 0.767952976917611 0.501825291934707 0.56778735 0.8747189 prediction 0.532255369965807 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5262855 chr5:5262857 nonsynonymous SNV 0.264 3 23 hm5C_associated_SNPs_60782 0 0 0 0 2 ADAMTS16 chr5:5262896 5'GT 5262896 Upstream 40bp
chr7 139715553 139715553 1 + G T LGG 139715550 + 139715530 139715570 41 CGGGAGGCAGCTCAGGACTGCGAGGTGCTGGGGCAGCGCAT CGGGAGGCAGCTCAGGACTGCGATGTGCTGGGGCAGCGCAT < 41bp 0.766119913451096 0.372785743033222 0.92868507 0.90847194 prediction 0.532239826902193 Functional Loss - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139715550 chr7:139715553 nonsynonymous SNV 0.692 0 24 hm5C_associated_SNPs_60783 0 0 0 0 1 TBXAS1 chr7:139715523 3'AG 139715523 Downstream 31bp
chr1 233091399 233091399 1 + G C BLCA 233091395 + 233091375 233091415 41 TTTATACCGAAGAAGTCAGACAGGGAGGGAGAAGAATAGGA TTTATACCGAAGAAGTCAGACAGGCAGGGAGAAGAATAGGA < 41bp 0.766555709338971 0.500438844829248 0.436389 0.1682817 prediction 0.532233729019444 Functional Loss - NTPCR ENSG00000135778 CDS Human protein_coding chr1:233091395 chr1:233091399 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_60785 0 0 1 0 2 NTPCR chr1:233091303 3'AG 233091303 Downstream 97bp
chr1 233091399 233091399 1 + G C BLCA 233091395 + 233091375 233091415 41 TTTATACCGAAGAAGTCAGACAGGGAGGGAGAAGAATAGGA TTTATACCGAAGAAGTCAGACAGGCAGGGAGAAGAATAGGA < 41bp 0.766555709338971 0.500438844829248 0.436389 0.1682817 prediction 0.532233729019444 Functional Loss - NTPCR ENSG00000135778 CDS Human protein_coding chr1:233091395 chr1:233091399 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_60785 0 0 1 0 2 NTPCR chr1:233091465 5'GT 233091465 Upstream 67bp
chr8 101237520 101237520 1 + C T LIHC 101237518 + 101237498 101237538 41 CATCCGGCAAAAGAGATGATCTCAAAACAAGCAGGAGACTC CATCCGGCAAAAGAGATGATCTTAAAACAAGCAGGAGACTC < 41bp 0.783996264951182 0.517882930693536 0.84052473 0.4737234 prediction 0.532226668515293 Functional Loss - SPAG1 ENSG00000104450 CDS Human protein_coding chr8:101237518 chr8:101237520 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_60786 0 0 0 0 1 SPAG1 chr8:101237567 5'GT 101237567 Upstream 48bp
chr1 206650076 206650076 1 + G T LUAD 206650074 + 206650054 206650094 41 AAGCCCCAGCAAAAAGCGTTCGGGGTGACTGTGGATCTCTG AAGCCCCAGCAAAAAGCGTTCGTGGTGACTGTGGATCTCTG < 41bp 0.766113100951976 0.409070557795592 0.9043176 0.7187855 prediction 0.532226201903951 Functional Loss - IKBKE ENSG00000143466 CDS Human other chr1:206650074 chr1:206650076 nonsynonymous SNV 0.983 3 23 hm5C_associated_SNPs_60787 0 0 0 0 1 IKBKE chr1:206650021 3'AG 206650021 Downstream 56bp
chr5 78379065 78379065 1 + A C GBM 78379061 + 78379041 78379081 41 CGCTTTGGGCCCGACACCAGCTTGAAGACGATGGAGCTCAT CGCTTTGGGCCCGACACCAGCTTGCAGACGATGGAGCTCAT < 41bp 0.766107940262662 0.344027357434643 0.18191841 0.3718403 prediction 0.532215880525325 Functional Loss - BHMT2 ENSG00000132840 CDS Human protein_coding chr5:78379061 chr5:78379065 nonsynonymous SNV 0.497 0 25 hm5C_associated_SNPs_60789 0 0 0 0 1 BHMT2 chr5:78379015 3'AG 78379015 Downstream 51bp
chr18 29795160 29795160 1 + C T rs16962851 29795158 + 29795138 29795178 41 GAACCAGTGCCTTTATAACCCACGAAAGGCTGAAAAGCAGA GAACCAGTGCCTTTATAACCCATGAAAGGCTGAAAAGCAGA < 41bp 0.77737540561604 0.51127345725843 0.09171769 0.07359195 prediction 0.532203896715219 Functional Loss - MEP1B ENSG00000141434 CDS Human protein_coding chr18:29795158 chr18:29795160 synonymous SNV . 0 23 hm5C_associated_SNPs_60790 0 0 0 0 1 MEP1B chr18:29795224 5'GT 29795224 Upstream 65bp
chr6 32139163 32139163 1 - C A LUSC 32139166 - 32139146 32139186 41 CCCAGTGCCAAGTACTTCTTCAAGATGGCCTTCTACAATGG CCCAGTGCCAAGTACTTCTTCAATATGGCCTTCTACAATGG < 41bp 0.766100038149201 0.472869545989977 0.10853845 0.07198727 prediction 0.532200076298402 Functional Loss - AGPAT1 ENSG00000204310 CDS Human protein_coding chr6:32139166 chr6:32139163 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_60792 0 0 1 0 1 AGPAT1 chr6:32139074 5'GT 32139074 Upstream 90bp
chr22 39483104 39483104 1 + G T BLCA 39483101 + 39483081 39483121 41 CTAGATGAGCACAGCCAAGACCTGAGTGGGAGGCTGCGGGC CTAGATGAGCACAGCCAAGACCTTAGTGGGAGGCTGCGGGC < 41bp 0.766091347559793 0.372156837115594 0.36156553 0.27045342 prediction 0.532182695119587 Functional Loss - APOBEC3G ENSG00000239713 CDS Human protein_coding chr22:39483101 chr22:39483104 synonymous SNV . 0 24 hm5C_associated_SNPs_60795 0 0 0 0 2 APOBEC3G chr22:39483016 3'AG 39483016 Downstream 89bp
chr22 39483104 39483104 1 + G T BLCA 39483101 + 39483081 39483121 41 CTAGATGAGCACAGCCAAGACCTGAGTGGGAGGCTGCGGGC CTAGATGAGCACAGCCAAGACCTTAGTGGGAGGCTGCGGGC < 41bp 0.766091347559793 0.372156837115594 0.36156553 0.27045342 prediction 0.532182695119587 Functional Loss - APOBEC3G ENSG00000239713 CDS Human protein_coding chr22:39483101 chr22:39483104 synonymous SNV . 0 24 hm5C_associated_SNPs_60795 0 0 0 0 2 APOBEC3G chr22:39483131 5'GT 39483131 Upstream 28bp
chr19 55046888 55046888 1 + G T UCEC 55046886 + 55046866 55046906 41 GGTGAGCCTGCGCTGTCACTCAGAACTGGCCTTTGATGAAT GGTGAGCCTGCGCTGTCACTCATAACTGGCCTTTGATGAAT < 41bp 0.766090182944417 0.435672263181299 0.8929739 0.1233328 prediction 0.532180365888834 Functional Loss - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55046886 chr19:55046888 stopgain 0.001 0 23 hm5C_associated_SNPs_60796 0 0 0 0 1 KIR3DX1 chr19:55046805 3'AG 55046805 Downstream 84bp
chr9 136217511 136217511 1 + G T COAD 136217508 + 136217488 136217528 41 GGGGTCCCTTACTGCATTATCAAGGGAAAGGCAAGACTGGG GGGGTCCCTTACTGCATTATCAATGGAAAGGCAAGACTGGG < 41bp 0.766064396969155 0.414417139218795 0.93979293 0.43128252 prediction 0.53212879393831 Functional Loss - RPL7A ENSG00000148303 CDS Human protein_coding chr9:136217508 chr9:136217511 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_60799 0 0 1 0 2 RPL7A chr9:136217452 3'AG 136217452 Downstream 60bp
chr9 136217511 136217511 1 + G T COAD 136217508 + 136217488 136217528 41 GGGGTCCCTTACTGCATTATCAAGGGAAAGGCAAGACTGGG GGGGTCCCTTACTGCATTATCAATGGAAAGGCAAGACTGGG < 41bp 0.766064396969155 0.414417139218795 0.93979293 0.43128252 prediction 0.53212879393831 Functional Loss - RPL7A ENSG00000148303 CDS Human protein_coding chr9:136217508 chr9:136217511 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_60799 0 0 1 0 2 RPL7A chr9:136217582 5'GT 136217582 Upstream 72bp
chr1 160147329 160147329 1 + G T STAD 160147327 + 160147307 160147347 41 AGGGATGATCCAGGCTCTGGCTGGATTCTTTACCTACTTTG AGGGATGATCCAGGCTCTGGCTTGATTCTTTACCTACTTTG < 41bp 0.766063525271454 0.430353666219211 0.40894666 0.124607205 prediction 0.532127050542909 Functional Loss - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160147327 chr1:160147329 stopgain 0.998 1 23 hm5C_associated_SNPs_60800 0 0 0 0 1 ATP1A4 chr1:160147309 3'AG 160147309 Downstream 21bp
chr15 23609550 23609550 1 + G T rs140059935 23609547 + 23609527 23609567 41 TGAGTGAGCTGGTGAAGAAACAAGAACTTCGCTTCATTCAA TGAGTGAGCTGGTGAAGAAACAATAACTTCGCTTCATTCAA < 41bp 0.902965899297891 0.636904877778268 0.28726602 0.12680778 prediction 0.532122043039246 Functional Loss - GOLGA8S ENSG00000261739 CDS Human protein_coding chr15:23609547 chr15:23609550 stopgain 0.001 0 24 hm5C_associated_SNPs_60801 0 0 0 0 2 GOLGA8S chr15:23609490 3'AG 23609490 Downstream 61bp
chr15 23609550 23609550 1 + G T rs140059935 23609547 + 23609527 23609567 41 TGAGTGAGCTGGTGAAGAAACAAGAACTTCGCTTCATTCAA TGAGTGAGCTGGTGAAGAAACAATAACTTCGCTTCATTCAA < 41bp 0.902965899297891 0.636904877778268 0.28726602 0.12680778 prediction 0.532122043039246 Functional Loss - GOLGA8S ENSG00000261739 CDS Human protein_coding chr15:23609547 chr15:23609550 stopgain 0.001 0 24 hm5C_associated_SNPs_60801 0 0 0 0 2 GOLGA8S chr15:23609590 5'GT 23609590 Upstream 41bp
chr19 22785639 22785639 1 + A T GBM 22785635 + 22785615 22785655 41 AGGGGGCAGCGCTGAAGGAGCAGCACCGAGAGGAGGAGGAG AGGGGGCAGCGCTGAAGGAGCAGCTCCGAGAGGAGGAGGAG < 41bp 0.808214267230235 0.54215396389515 0.31207505 0.29287577 prediction 0.53212060667017 Functional Loss - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human other chr19:22785635 chr19:22785639 . . 0 25 hm5C_associated_SNPs_60802 0 0 0 0 1 GOLGA2P9 chr19:22785590 3'AG 22785590 Downstream 50bp
chr1 11766388 11766388 1 + G T SARC 11766385 + 11766365 11766405 41 TGCTGCCCCTGGAGCTGAGCCTGGCAGGCGCCCTTGCACCT TGCTGCCCCTGGAGCTGAGCCTGTCAGGCGCCCTTGCACCT < 41bp 0.766056139082505 0.366137557034232 0.22230953 0.02782619 prediction 0.532112278165011 Functional Loss - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11766385 chr1:11766388 nonsynonymous SNV 0.008 1 24 hm5C_associated_SNPs_60803 0 0 0 0 1 DRAXIN chr1:11766306 3'AG 11766306 Downstream 83bp
chr1 32696724 32696724 1 + G T SARC 32696722 + 32696702 32696742 41 CTATCTTTTTCCAGCTACAGCAGCGGCGGCGAAGATGGTTA CTATCTTTTTCCAGCTACAGCATCGGCGGCGAAGATGGTTA < 41bp 0.766048135896776 0.442034556645185 0.380636 0.19025946 prediction 0.532096271793553 Functional Loss - EIF3I ENSG00000084623 CDS Human protein_coding chr1:32696722 chr1:32696724 nonsynonymous SNV 0.719 4 23 hm5C_associated_SNPs_60806 0 0 1 0 1 EIF3I chr1:32696716 3'AG 32696716 Downstream 9bp
chr1 54427995 54427995 1 + C T rs35818146 54427993 + 54427973 54428013 41 TCAAAACCGTCAAGCACAAGCTCCAGACCCACATAGGCCTT TCAAAACCGTCAAGCACAAGCTTCAGACCCACATAGGCCTT < 41bp 0.818434237912186 0.552400256215175 0.6916459 0.30259988 prediction 0.532067963394022 Functional Loss - LRRC42 ENSG00000116212 CDS Human protein_coding chr1:54427993 chr1:54427995 synonymous SNV . 0 23 hm5C_associated_SNPs_60810 0 0 1 0 2 LRRC42 chr1:54427969 3'AG 54427969 Downstream 27bp
chr1 54427995 54427995 1 + C T rs35818146 54427993 + 54427973 54428013 41 TCAAAACCGTCAAGCACAAGCTCCAGACCCACATAGGCCTT TCAAAACCGTCAAGCACAAGCTTCAGACCCACATAGGCCTT < 41bp 0.818434237912186 0.552400256215175 0.6916459 0.30259988 prediction 0.532067963394022 Functional Loss - LRRC42 ENSG00000116212 CDS Human protein_coding chr1:54427993 chr1:54427995 synonymous SNV . 0 23 hm5C_associated_SNPs_60810 0 0 1 0 2 LRRC42 chr1:54428082 5'GT 54428082 Upstream 88bp
chr12 56625289 56625289 1 + G T SARC 56625287 + 56625267 56625307 41 TTCAGGGGCTTCGCCTGGGACAGCATGGGCCTCTGACTGGA TTCAGGGGCTTCGCCTGGGACATCATGGGCCTCTGACTGGA < 41bp 0.869827006451649 0.60379682532993 0.5032389 0.39006042 prediction 0.532060362243439 Functional Loss - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56625287 chr12:56625289 nonsynonymous SNV 0.945 0 23 hm5C_associated_SNPs_60811 0 0 1 0 2 SLC39A5 chr12:56625250 3'AG 56625250 Downstream 40bp
chr12 56625289 56625289 1 + G T SARC 56625287 + 56625267 56625307 41 TTCAGGGGCTTCGCCTGGGACAGCATGGGCCTCTGACTGGA TTCAGGGGCTTCGCCTGGGACATCATGGGCCTCTGACTGGA < 41bp 0.869827006451649 0.60379682532993 0.5032389 0.39006042 prediction 0.532060362243439 Functional Loss - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56625287 chr12:56625289 nonsynonymous SNV 0.945 0 23 hm5C_associated_SNPs_60811 0 0 1 0 2 SLC39A5 chr12:56625345 5'GT 56625345 Upstream 57bp
chr11 2943376 2943376 1 + G T SKCM 2943373 + 2943353 2943393 41 GGGCAGCTGAGCAGCCACTTCTCGGAGGAGGTGCTGCTCCG GGGCAGCTGAGCAGCCACTTCTCTGAGGAGGTGCTGCTCCG < 41bp 0.910290242892932 0.644285842483932 0.76304334 0.42479432 prediction 0.532008800818 Functional Loss - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2943373 chr11:2943376 synonymous SNV . 0 24 hm5C_associated_SNPs_60812 0 0 1 0 2 SLC22A18 chr11:2943332 3'AG 2943332 Downstream 45bp
chr11 2943376 2943376 1 + G T SKCM 2943373 + 2943353 2943393 41 GGGCAGCTGAGCAGCCACTTCTCGGAGGAGGTGCTGCTCCG GGGCAGCTGAGCAGCCACTTCTCTGAGGAGGTGCTGCTCCG < 41bp 0.910290242892932 0.644285842483932 0.76304334 0.42479432 prediction 0.532008800818 Functional Loss - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2943373 chr11:2943376 synonymous SNV . 0 24 hm5C_associated_SNPs_60812 0 0 1 0 2 SLC22A18 chr11:2943433 5'GT 2943433 Upstream 58bp
chr10 99625436 99625436 1 - T G LUSC 99625440 - 99625420 99625460 41 CAGTCACCGGGCCCCCGCCCCACCACCCCCACCGCTGCTGC CAGTCACCGGGCCCCCGCCCCACCCCCCCCACCGCTGCTGC < 41bp 0.765998906750161 0.362462855372945 0.18513507 0.07538268 prediction 0.531997813500322 Functional Loss - CRTAC1;GOLGA7B ENSG00000095713;ENSG00000155265 CDS Human protein_coding chr10:99625440 chr10:99625436 nonsynonymous SNV 0.685 0 25 hm5C_associated_SNPs_60813 0 0 0 0 1 CRTAC1 chr10:99625471 3'AG 99625471 Downstream 36bp
chr8 120233914 120233914 1 + A T COAD 120233910 + 120233890 120233930 41 GGATGGGTCATGTTTGTGTCCGTGACAGCGTTTTTCTTTTC GGATGGGTCATGTTTGTGTCCGTGTCAGCGTTTTTCTTTTC < 41bp 0.765998376871752 0.458179375142693 0.10646477 0.058523625 prediction 0.531996753743504 Functional Loss - MAL2 ENSG00000147676 CDS Human protein_coding chr8:120233910 chr8:120233914 nonsynonymous SNV 0.949 0 25 hm5C_associated_SNPs_60814 0 0 1 0 2 MAL2 chr8:120233827 3'AG 120233827 Downstream 88bp
chr8 120233914 120233914 1 + A T COAD 120233910 + 120233890 120233930 41 GGATGGGTCATGTTTGTGTCCGTGACAGCGTTTTTCTTTTC GGATGGGTCATGTTTGTGTCCGTGTCAGCGTTTTTCTTTTC < 41bp 0.765998376871752 0.458179375142693 0.10646477 0.058523625 prediction 0.531996753743504 Functional Loss - MAL2 ENSG00000147676 CDS Human protein_coding chr8:120233910 chr8:120233914 nonsynonymous SNV 0.949 0 25 hm5C_associated_SNPs_60814 0 0 1 0 2 MAL2 chr8:120233997 5'GT 120233997 Upstream 84bp
chr9 21931113 21931113 1 + G T UCEC 21931111 + 21931091 21931131 41 TTCCCATCAGTGGGACATGGCAGAGGTGAAATCCTGCCCCT TTCCCATCAGTGGGACATGGCATAGGTGAAATCCTGCCCCT < 41bp 0.76599426348064 0.441622332580869 0.92008555 0.35022682 prediction 0.531988526961281 Functional Loss - MTAP;CDKN2A-AS1 ENSG00000099810 CDS Human protein_coding chr9:21931111 chr9:21931113 nonsynonymous SNV 0.909 1 23 hm5C_associated_SNPs_60815 0 0 0 0 1 MTAP;CDKN2A-AS1 chr9:21931115 5'GT 21931115 Upstream 3bp
chr17 1675246 1675246 1 + C T BLCA 1675244 + 1675224 1675264 41 CAGAGTCCTGACGGGCAACCCTCGCTTGGACCTGCAAGAGA CAGAGTCCTGACGGGCAACCCTTGCTTGGACCTGCAAGAGA < 41bp 0.784176663775795 0.518189858152786 0.12844792 0.04451877 prediction 0.531973611246018 Functional Loss - SERPINF1 ENSG00000132386 CDS Human protein_coding chr17:1675244 chr17:1675246 nonsynonymous SNV 0.289 5 23 hm5C_associated_SNPs_60817 0 0 1 0 1 SERPINF1 chr17:1675166 3'AG 1675166 Downstream 81bp
chr12 520947 520947 1 + A C rs4980895 520943 + 520923 520963 41 GTCTCCAAACGTGGTGTTGCCGTCAGTGGTCCCACCAAGAG GTCTCCAAACGTGGTGTTGCCGTCCGTGGTCCCACCAAGAG < 41bp 0.765979169150762 0.360680419850453 0.42838928 0.4070196 prediction 0.531958338301524 Functional Loss - CCDC77 ENSG00000120647 CDS Human protein_coding chr12:520943 chr12:520947 nonsynonymous SNV 0.013 1 25 hm5C_associated_SNPs_60819 0 0 1 0 1 CCDC77 chr12:520913 3'AG 520913 Downstream 35bp
chr1 219366582 219366582 1 + G T GBM 219366580 + 219366560 219366600 41 AAAAGTGGCATCAAGAAGAACAGGATATTAATAGGTAAGAC AAAAGTGGCATCAAGAAGAACATGATATTAATAGGTAAGAC < 41bp 0.765968965217414 0.471517625561045 0.479704 0.26109233 prediction 0.531937930434828 Functional Loss - LYPLAL1 ENSG00000143353 CDS Human protein_coding chr1:219366580 chr1:219366582 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_60821 0 0 1 0 1 LYPLAL1 chr1:219366593 5'GT 219366593 Upstream 12bp
chr14 69908877 69908877 1 + C T LGG 69908875 + 69908855 69908895 41 TCCATGAACATGAGCACAGCCACGACCACACACAGCTGCAT TCCATGAACATGAGCACAGCCATGACCACACACAGCTGCAT < 41bp 0.808098215114859 0.542130180314489 0.05035329 0.04230681 prediction 0.53193606960074 Functional Loss - SLC39A9 ENSG00000029364 CDS Human protein_coding chr14:69908875 chr14:69908877 synonymous SNV . 0 23 hm5C_associated_SNPs_60822 0 0 1 0 1 SLC39A9 chr14:69908786 3'AG 69908786 Downstream 92bp
chr12 85674217 85674217 1 + G C BLCA 85674213 + 85674193 85674233 41 GCCTTCGGACCCCTGCCCCGCGCCGAGCATCACGTGCGCTT GCCTTCGGACCCCTGCCCCGCGCCCAGCATCACGTGCGCTT < 41bp 0.779250400498215 0.513288177902776 0.62109023 0.17562395 prediction 0.531924445190878 Functional Loss - ALX1 ENSG00000180318 CDS Human protein_coding chr12:85674213 chr12:85674217 nonsynonymous SNV 0.986 3 25 hm5C_associated_SNPs_60824 0 0 0 0 1 ALX1 chr12:85674265 5'GT 85674265 Upstream 49bp
chr9 125273111 125273111 1 + G C CESC 125273110 + 125273090 125273130 41 GAGAACCAGAGCAGCGTGTCCGAGTTCCTCCTTCTGGGCCT GAGAACCAGAGCAGCGTGTCCCAGTTCCTCCTTCTGGGCCT < 41bp 0.818664088282996 0.552705325316912 0.7724619 0.3064688 prediction 0.531917525932168 Functional Loss - OR1J2 ENSG00000197233 CDS Human protein_coding chr9:125273110 chr9:125273111 nonsynonymous SNV 0.394 0 22 hm5C_associated_SNPs_60825 0 0 0 0 1 OR1J2 chr9:125273068 3'AG 125273068 Downstream 44bp
chr6 100056647 100056647 1 + G C LUSC 100056646 + 100056626 100056666 41 GTGAGAGGGGAGCTGGTGGACGAGTCGGGGGGCTCCCCTCT GTGAGAGGGGAGCTGGTGGACCAGTCGGGGGGCTCCCCTCT < 41bp 0.840005267962176 0.574061945536714 0.6736246 0.63370913 prediction 0.531886644850925 Functional Loss - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100056646 chr6:100056647 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_60829 0 0 0 0 1 PRDM13 chr6:100056617 3'AG 100056617 Downstream 31bp
chr9 137777099 137777099 1 + A T SKCM 137777095 + 137777075 137777115 41 CCCTTCCCAGGCCCGCGTACCTGCAAGGACCTGCTAGACCG CCCTTCCCAGGCCCGCGTACCTGCTAGGACCTGCTAGACCG < 41bp 0.858712048268016 0.592770131563121 0.8163445 0.24303761 prediction 0.531883833409789 Functional Loss - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137777095 chr9:137777099 stopgain 0.062 0 25 hm5C_associated_SNPs_60830 0 0 0 0 1 FCN2 chr9:137777085 3'AG 137777085 Downstream 15bp
chr10 94822506 94822506 1 + G T rs114084223 94822503 + 94822483 94822523 41 GCGCGCGTGTTCAGCCGCGCCGCGCTGGAGCGCTACGTGCC GCGCGCGTGTTCAGCCGCGCCGCTCTGGAGCGCTACGTGCC < 41bp 0.765938471348804 0.388170749125371 0.28684515 0.06797314 prediction 0.531876942697608 Functional Loss - CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94822503 chr10:94822506 synonymous SNV . 0 24 hm5C_associated_SNPs_60831 0 0 0 0 1 CYP26C1 chr10:94822477 3'AG 94822477 Downstream 30bp
chr12 69080776 69080776 1 + G C BRCA 69080772 + 69080752 69080792 41 CGGGTCGAAGGGCTTGCTTCCGGAGAGCGGGAAGGCTAAAA CGGGTCGAAGGGCTTGCTTCCGGACAGCGGGAAGGCTAAAA < 41bp 0.792737766668313 0.526801202414394 0.889017 0.47415423 prediction 0.531873128507838 Functional Loss - NUP107 ENSG00000247363 ncRNA_exonic Human protein_coding chr12:69080772 chr12:69080776 . . 0 25 hm5C_associated_SNPs_60832 0 0 1 0 1 NUP107 chr12:69080853 5'GT 69080853 Upstream 78bp
chr16 56875739 56875739 1 + C T HNSC 56875737 + 56875717 56875757 41 CCCAGCGAGTCATCGAGGACCGCGACTCTGTAAGATCCCAG CCCAGCGAGTCATCGAGGACCGTGACTCTGTAAGATCCCAG < 41bp 0.778589627844655 0.512660745871194 0.18391031 0.26388562 prediction 0.531857763946922 Functional Loss - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56875737 chr16:56875739 synonymous SNV . 0 23 hm5C_associated_SNPs_60834 0 0 1 0 1 NUP93 chr16:56875745 5'GT 56875745 Upstream 7bp
chr11 63963214 63963214 1 + C T HNSC 63963212 + 63963192 63963232 41 GGAAGAGATTGCAACACCTCCACCACCACCCCCTCCCAAAA GGAAGAGATTGCAACACCTCCATCACCACCCCCTCCCAAAA < 41bp 0.765921057964805 0.480804035808993 0.026782423 0.012126803 prediction 0.53184211592961 Functional Loss - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63963212 chr11:63963214 nonsynonymous SNV 0.024 1 23 hm5C_associated_SNPs_60835 0 0 1 0 2 STIP1 chr11:63963117 3'AG 63963117 Downstream 98bp
chr11 63963214 63963214 1 + C T HNSC 63963212 + 63963192 63963232 41 GGAAGAGATTGCAACACCTCCACCACCACCCCCTCCCAAAA GGAAGAGATTGCAACACCTCCATCACCACCCCCTCCCAAAA < 41bp 0.765921057964805 0.480804035808993 0.026782423 0.012126803 prediction 0.53184211592961 Functional Loss - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63963212 chr11:63963214 nonsynonymous SNV 0.024 1 23 hm5C_associated_SNPs_60835 0 0 1 0 2 STIP1 chr11:63963285 5'GT 63963285 Upstream 72bp
chr16 31339510 31339510 1 + G T LUAD 31339508 + 31339488 31339528 41 CCAACAAAACCGAATTCCAACTGGAGCTGCCGGTGAAATAT CCAACAAAACCGAATTCCAACTTGAGCTGCCGGTGAAATAT < 41bp 0.765917057454933 0.433738552805366 0.3996311 0.086403936 prediction 0.531834114909866 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31339508 chr16:31339510 synonymous SNV . 0 23 hm5C_associated_SNPs_60836 0 0 0 0 2 ITGAM chr16:31339468 3'AG 31339468 Downstream 43bp
chr16 31339510 31339510 1 + G T LUAD 31339508 + 31339488 31339528 41 CCAACAAAACCGAATTCCAACTGGAGCTGCCGGTGAAATAT CCAACAAAACCGAATTCCAACTTGAGCTGCCGGTGAAATAT < 41bp 0.765917057454933 0.433738552805366 0.3996311 0.086403936 prediction 0.531834114909866 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31339508 chr16:31339510 synonymous SNV . 0 23 hm5C_associated_SNPs_60836 0 0 0 0 2 ITGAM chr16:31339551 5'GT 31339551 Upstream 42bp
chr8 55049839 55049839 1 + A C PRAD 55049835 + 55049815 55049855 41 TCTTGTTTTACAGTTTCAGACGCCAGTATAAGCCTTTGAGT TCTTGTTTTACAGTTTCAGACGCCCGTATAAGCCTTTGAGT < 41bp 0.76590997592811 0.3551833208704 0.08665615 0.089167416 prediction 0.531819951856219 Functional Loss - MRPL15 ENSG00000137547 CDS Human protein_coding chr8:55049835 chr8:55049839 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_60838 0 0 0 0 1 MRPL15 chr8:55049828 3'AG 55049828 Downstream 12bp
chr3 167510405 167510405 1 + G T UCEC 167510402 + 167510382 167510422 41 GGTGAAAGATTTGGTATCCCCAAGGGATTTTGATGCTGCCA GGTGAAAGATTTGGTATCCCCAATGGATTTTGATGCTGCCA < 41bp 0.765903677712568 0.380762277353273 0.864584 0.26720524 prediction 0.531807355425135 Functional Loss - SERPINI1 ENSG00000163536 CDS Human protein_coding chr3:167510402 chr3:167510405 nonsynonymous SNV 0.524 2 24 hm5C_associated_SNPs_60839 0 0 0 0 1 SERPINI1 chr3:167510378 3'AG 167510378 Downstream 28bp
chr14 73572603 73572603 1 + G T rs556945481 73572601 + 73572581 73572621 41 ATCGTGAAAGGGAACGAGAGCGGGAAAGAGAGAGAGAGAGA ATCGTGAAAGGGAACGAGAGCGTGAAAGAGAGAGAGAGAGA < 41bp 0.866073345866373 0.600175523807178 0.66681445 0.14616862 prediction 0.53179564411839 Functional Loss - RBM25 ENSG00000119707 CDS Human protein_coding chr14:73572601 chr14:73572603 synonymous SNV . 0 23 hm5C_associated_SNPs_60840 0 0 1 0 1 RBM25 chr14:73572567 3'AG 73572567 Downstream 37bp
chr1 22924215 22924215 1 + G T SARC 22924213 + 22924193 22924233 41 GGAGGCTGCGGGTGCCAGGGCAGCGGGATGTGCCCGTGGCC GGAGGCTGCGGGTGCCAGGGCATCGGGATGTGCCCGTGGCC < 41bp 0.765893670341933 0.414598046240368 0.87822324 0.7510209 prediction 0.531787340683865 Functional Loss - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22924213 chr1:22924215 nonsynonymous SNV 0.970 3 23 hm5C_associated_SNPs_60844 0 0 0 0 1 EPHA8 chr1:22924169 3'AG 22924169 Downstream 47bp
chr1 156770252 156770252 1 + G T UCEC 156770249 + 156770229 156770269 41 ACCCAAGCCAAATATGGATTCTAGGGCTCTGGAACTGATTG ACCCAAGCCAAATATGGATTCTATGGCTCTGGAACTGATTG < 41bp 0.7658874217495 0.386991479558486 0.40728742 0.24778661 prediction 0.531774843499001 Functional Loss - PRCC ENSG00000143294 CDS Human protein_coding chr1:156770249 chr1:156770252 stoploss 0.971 0 24 hm5C_associated_SNPs_60846 0 0 1 0 1 PRCC chr1:156770166 3'AG 156770166 Downstream 87bp
chr3 111795816 111795816 1 + C T STAD 111795814 + 111795794 111795834 41 CGGTGAGAAGAATTGTGGTCCACGAGTACTATAACAGTCAG CGGTGAGAAGAATTGTGGTCCATGAGTACTATAACAGTCAG < 41bp 0.791739864995463 0.525856867784838 0.14613214 0.104530275 prediction 0.53176599442125 Functional Loss - TMPRSS7 ENSG00000176040 CDS Human protein_coding chr3:111795814 chr3:111795816 synonymous SNV . 0 23 hm5C_associated_SNPs_60847 0 0 0 0 1 TMPRSS7 chr3:111795723 3'AG 111795723 Downstream 94bp
chr11 33667501 33667501 1 + G C LUAD 33667497 + 33667477 33667517 41 GGAGGTGGTGACCAGCGCTCCGGGGACCATGACGCGGCCCA GGAGGTGGTGACCAGCGCTCCGGGCACCATGACGCGGCCCA < 41bp 0.771736168858812 0.505853195902933 0.9252752 0.8900999 prediction 0.531765945911759 Functional Loss - KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33667497 chr11:33667501 synonymous SNV . 0 25 hm5C_associated_SNPs_60848 0 0 0 0 1 KIAA1549L chr11:33667582 5'GT 33667582 Upstream 82bp
chr19 55106867 55106867 1 + G T ESCA 55106864 + 55106844 55106884 41 ATCTCCTGGAGCTCCTGGTCCTAGGTGAGAAATTCACAGCA ATCTCCTGGAGCTCCTGGTCCTATGTGAGAAATTCACAGCA < 41bp 0.765848820292154 0.37878678343648 0.7319858 0.19440979 prediction 0.531697640584307 Functional Loss - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55106864 chr19:55106867 stopgain 0.241 3 24 hm5C_associated_SNPs_60850 0 0 0 0 1 LILRA1 chr19:55106867 5'GT 55106867 Upstream 1bp
chr12 64814179 64814179 1 + G T LUAD 64814176 + 64814156 64814196 41 ATATGTCAATAGAAGTTCTACGGGAAGAAGCATGTGACTGT ATATGTCAATAGAAGTTCTACGGTAAGAAGCATGTGACTGT < 41bp 0.765844167583886 0.396899584392373 0.2751329 0.1373918 prediction 0.531688335167771 Functional Loss - XPOT ENSG00000184575 CDS Human protein_coding chr12:64814176 chr12:64814179 stopgain 0.997 1 24 hm5C_associated_SNPs_60851 0 0 0 0 1 XPOT chr12:64814133 3'AG 64814133 Downstream 47bp
chr17 78166339 78166339 1 + G T BLCA 78166336 + 78166316 78166356 41 CAGGACCAGGGAGCCCTGTCCACGGGAGAAGCAGCGGCTGG CAGGACCAGGGAGCCCTGTCCACTGGAGAAGCAGCGGCTGG < 41bp 0.76584411343929 0.366585555674766 0.86508614 0.3880906 prediction 0.531688226878581 Functional Loss - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78166336 chr17:78166339 nonsynonymous SNV 0.271 0 24 hm5C_associated_SNPs_60852 0 0 0 0 2 CARD14 chr17:78166302 3'AG 78166302 Downstream 38bp
chr17 78166339 78166339 1 + G T BLCA 78166336 + 78166316 78166356 41 CAGGACCAGGGAGCCCTGTCCACGGGAGAAGCAGCGGCTGG CAGGACCAGGGAGCCCTGTCCACTGGAGAAGCAGCGGCTGG < 41bp 0.76584411343929 0.366585555674766 0.86508614 0.3880906 prediction 0.531688226878581 Functional Loss - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78166336 chr17:78166339 nonsynonymous SNV 0.271 0 24 hm5C_associated_SNPs_60852 0 0 0 0 2 CARD14 chr17:78166418 5'GT 78166418 Upstream 80bp
chr16 4556944 4556944 1 + C T UCEC 4556942 + 4556922 4556962 41 AGGAAGGGACCAAGGAAGCACACGACCGGGCAGAAAACACC AGGAAGGGACCAAGGAAGCACATGACCGGGCAGAAAACACC < 41bp 0.784850894824432 0.519010054126362 0.10893986 0.14147627 prediction 0.531681681396139 Functional Loss - HMOX2 ENSG00000103415 CDS Human protein_coding chr16:4556942 chr16:4556944 synonymous SNV . 0 23 hm5C_associated_SNPs_60855 0 0 0 0 2 HMOX2 chr16:4556896 3'AG 4556896 Downstream 49bp
chr16 4556944 4556944 1 + C T UCEC 4556942 + 4556922 4556962 41 AGGAAGGGACCAAGGAAGCACACGACCGGGCAGAAAACACC AGGAAGGGACCAAGGAAGCACATGACCGGGCAGAAAACACC < 41bp 0.784850894824432 0.519010054126362 0.10893986 0.14147627 prediction 0.531681681396139 Functional Loss - HMOX2 ENSG00000103415 CDS Human protein_coding chr16:4556942 chr16:4556944 synonymous SNV . 0 23 hm5C_associated_SNPs_60855 0 0 0 0 2 HMOX2 chr16:4557013 5'GT 4557013 Upstream 70bp
chr12 27521311 27521311 1 + C T GBM 27521309 + 27521289 27521329 41 CTCACACATGACAGAGTTTCCACGAAAACGCAAAGGAAGTG CTCACACATGACAGAGTTTCCATGAAAACGCAAAGGAAGTG < 41bp 0.789960384348724 0.524143487627472 0.11479196 0.13168186 prediction 0.531633793442505 Functional Loss - ARNTL2 ENSG00000029153 CDS Human protein_coding chr12:27521309 chr12:27521311 stopgain 0.501 0 23 hm5C_associated_SNPs_60859 0 0 0 0 1 ARNTL2 chr12:27521345 5'GT 27521345 Upstream 35bp
chr18 33780235 33780235 1 + G T LUSC 33780233 + 33780213 33780253 41 CTTTGGAGGAGGGACAGCCTCTGCGTACCTAGCAGGAGAAG CTTTGGAGGAGGGACAGCCTCTTCGTACCTAGCAGGAGAAG < 41bp 0.765810389120845 0.424003039601123 0.08033019 0.02372685 prediction 0.531620778241689 Functional Loss - MOCOS ENSG00000075643 CDS Human protein_coding chr18:33780233 chr18:33780235 nonsynonymous SNV 0.634 2 23 hm5C_associated_SNPs_60861 0 0 0 0 1 MOCOS chr18:33780287 5'GT 33780287 Upstream 53bp
chr3 38317409 38317409 1 + C T SKCM 38317407 + 38317387 38317427 41 TGGGGTACTACGGCCTGAGCCTCCAAGTGGGGGACTTCGGC TGGGGTACTACGGCCTGAGCCTTCAAGTGGGGGACTTCGGC < 41bp 0.765807031092869 0.463544768566521 0.9689363 0.9080372 prediction 0.531614062185737 Functional Loss - SLC22A13 ENSG00000172940 CDS Human protein_coding chr3:38317407 chr3:38317409 synonymous SNV . 0 23 hm5C_associated_SNPs_60862 0 0 0 0 1 SLC22A13 chr3:38317373 3'AG 38317373 Downstream 37bp
chr21 44151921 44151921 1 + G T STAD 44151919 + 44151899 44151939 41 AACCACAAGCCGTGGCCAGTCTGCTGAGAGACCACTGAGGG AACCACAAGCCGTGGCCAGTCTTCTGAGAGACCACTGAGGG < 41bp 0.768926791584197 0.503132743907807 0.17787471 0.0833697 prediction 0.531588095352779 Functional Loss - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44151919 chr21:44151921 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_60865 0 0 1 0 1 PDE9A chr21:44151880 3'AG 44151880 Downstream 42bp
chr11 134244612 134244612 1 + G T UCEC 134244610 + 134244590 134244630 41 GGTTGAGCAGCGGAATCAACCAGGTGGGAGCTTCCAGCCCC GGTTGAGCAGCGGAATCAACCATGTGGGAGCTTCCAGCCCC < 41bp 0.876334885270811 0.610562829786837 0.9191296 0.35239995 prediction 0.531544110967948 Functional Loss - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134244610 chr11:134244612 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_60866 0 0 0 0 1 GLB1L2 chr11:134244612 5'GT 134244612 Upstream 1bp
chr11 65650785 65650785 1 + G T UCEC 65650783 + 65650763 65650803 41 GGGTTTTGGCAGCGTCAAGTCAGAGGAGGGGATATGGGCAG GGGTTTTGGCAGCGTCAAGTCATAGGAGGGGATATGGGCAG < 41bp 0.881868675858823 0.616100711055778 0.84183997 0.40878522 prediction 0.531535929606089 Functional Loss - CTSW ENSG00000172543 CDS Human protein_coding chr11:65650783 chr11:65650785 stopgain 0.002 0 23 hm5C_associated_SNPs_60867 0 0 0 0 1 CTSW chr11:65650686 3'AG 65650686 Downstream 100bp
chr16 68842726 68842726 1 + A T OV 68842722 + 68842702 68842742 41 GGCTGAAGGTGACAGAGCCTCTGGATAGAGAACGCATTGCC GGCTGAAGGTGACAGAGCCTCTGGTTAGAGAACGCATTGCC < 41bp 0.87236717309511 0.606604558804885 0.14005443 0.09010354 prediction 0.531525228580452 Functional Loss - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68842722 chr16:68842726 nonsynonymous SNV 0.991 4 25 hm5C_associated_SNPs_60868 0 0 1 0 1 CDH1 chr16:68842751 5'GT 68842751 Upstream 26bp
chr1 3390034 3390034 1 + C T BLCA 3390032 + 3390012 3390052 41 TGCGGGGGCCTGCCCATGCTCTCCTTCCTGATCCTCCCCAT TGCGGGGGCCTGCCCATGCTCTTCTTCCTGATCCTCCCCAT < 41bp 0.76627367629468 0.500513785862667 0.054116726 0.06615102 prediction 0.531519780864026 Functional Loss - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3390032 chr1:3390034 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_60869 0 0 1 0 2 ARHGEF16 chr1:3389957 3'AG 3389957 Downstream 78bp
chr1 3390034 3390034 1 + C T BLCA 3390032 + 3390012 3390052 41 TGCGGGGGCCTGCCCATGCTCTCCTTCCTGATCCTCCCCAT TGCGGGGGCCTGCCCATGCTCTTCTTCCTGATCCTCCCCAT < 41bp 0.76627367629468 0.500513785862667 0.054116726 0.06615102 prediction 0.531519780864026 Functional Loss - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3390032 chr1:3390034 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_60869 0 0 1 0 2 ARHGEF16 chr1:3390086 5'GT 3390086 Upstream 53bp
chr17 686416 686416 1 + G T UCEC 686413 + 686393 686433 41 AGGCTCATTTCAGACGCTCTCAAGGCTGGAGCTGTGCCAAA AGGCTCATTTCAGACGCTCTCAATGCTGGAGCTGTGCCAAA < 41bp 0.765754296373907 0.368615846253494 0.9188653 0.34590477 prediction 0.531508592747814 Functional Loss - MRM3 ENSG00000171861 CDS Human protein_coding chr17:686413 chr17:686416 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_60871 0 0 1 0 1 MRM3 chr17:686323 3'AG 686323 Downstream 94bp
chr2 183993129 183993129 1 + G T BLCA 183993126 + 183993106 183993146 41 AGCTCCGGTGACTCCACAACCTCGATCAATTAGTGGCCCTT AGCTCCGGTGACTCCACAACCTCTATCAATTAGTGGCCCTT < 41bp 0.876784607300543 0.611055723080268 0.7619211 0.92279375 prediction 0.53145776844055 Functional Loss - NUP35 ENSG00000163002 CDS Human protein_coding chr2:183993126 chr2:183993129 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_60872 0 0 1 0 1 NUP35 chr2:183993185 5'GT 183993185 Upstream 57bp
chr3 32180158 32180158 1 + G T UCEC 32180156 + 32180136 32180176 41 ATTCCCCACCAGTTCATTCACAGAATCTGTGATGAGATCAC ATTCCCCACCAGTTCATTCACATAATCTGTGATGAGATCAC < 41bp 0.765727353110121 0.419989006514156 0.41698325 0.26613778 prediction 0.531454706220241 Functional Loss - GPD1L ENSG00000152642 CDS Human protein_coding chr3:32180156 chr3:32180158 stopgain 0.946 1 23 hm5C_associated_SNPs_60873 0 0 1 0 2 GPD1L chr3:32180079 3'AG 32180079 Downstream 80bp
chr3 32180158 32180158 1 + G T UCEC 32180156 + 32180136 32180176 41 ATTCCCCACCAGTTCATTCACAGAATCTGTGATGAGATCAC ATTCCCCACCAGTTCATTCACATAATCTGTGATGAGATCAC < 41bp 0.765727353110121 0.419989006514156 0.41698325 0.26613778 prediction 0.531454706220241 Functional Loss - GPD1L ENSG00000152642 CDS Human protein_coding chr3:32180156 chr3:32180158 stopgain 0.946 1 23 hm5C_associated_SNPs_60873 0 0 1 0 2 GPD1L chr3:32180219 5'GT 32180219 Upstream 62bp
chr12 49937975 49937975 1 + G T LGG 49937973 + 49937953 49937993 41 CTCAGTACTTCGGGGCCCATCTGCTGAAGACGGTGCGCCTG CTCAGTACTTCGGGGCCCATCTTCTGAAGACGGTGCGCCTG < 41bp 0.765724645909525 0.417783985948827 0.9052794 0.8041705 prediction 0.531449291819049 Functional Loss - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49937973 chr12:49937975 synonymous SNV . 0 23 hm5C_associated_SNPs_60874 0 0 0 0 1 KCNH3 chr12:49937958 3'AG 49937958 Downstream 18bp
chr15 89011240 89011240 1 + G T SARC 89011238 + 89011218 89011258 41 GTTGAACAGAACGCGGCTCCCAGCCACACCAAGTTCAGGTG GTTGAACAGAACGCGGCTCCCATCCACACCAAGTTCAGGTG < 41bp 0.765722104551589 0.426238816469088 0.06881884 0.086474806 prediction 0.531444209103177 Functional Loss - MRPS11 ENSG00000181991 CDS Human protein_coding chr15:89011238 chr15:89011240 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_60875 0 0 1 0 2 MRPS11 chr15:89011142 3'AG 89011142 Downstream 99bp
chr15 89011240 89011240 1 + G T SARC 89011238 + 89011218 89011258 41 GTTGAACAGAACGCGGCTCCCAGCCACACCAAGTTCAGGTG GTTGAACAGAACGCGGCTCCCATCCACACCAAGTTCAGGTG < 41bp 0.765722104551589 0.426238816469088 0.06881884 0.086474806 prediction 0.531444209103177 Functional Loss - MRPS11 ENSG00000181991 CDS Human protein_coding chr15:89011238 chr15:89011240 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_60875 0 0 1 0 2 MRPS11 chr15:89011255 5'GT 89011255 Upstream 16bp
chr1 197890484 197890484 1 + C T UCEC 197890482 + 197890462 197890502 41 TGCCACCTTGGCATTTCCGCCTCGGAGATGGTCATGCGCGC TGCCACCTTGGCATTTCCGCCTTGGAGATGGTCATGCGCGC < 41bp 0.791536405357371 0.525818904427981 0.31064808 0.15583661 prediction 0.531435001858781 Functional Loss - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197890482 chr1:197890484 nonsynonymous SNV 0.982 3 23 hm5C_associated_SNPs_60877 0 0 0 0 1 LHX9 chr1:197890434 3'AG 197890434 Downstream 51bp
chr12 52309042 52309042 1 + C T SKCM 52309040 + 52309020 52309060 41 TCAGACATGACCTCCCGCAACTCGAGCACGCAGCTGTGGCT TCAGACATGACCTCCCGCAACTTGAGCACGCAGCTGTGGCT < 41bp 0.810423394183704 0.54470618981218 0.14897862 0.045327246 prediction 0.531434408743049 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309040 chr12:52309042 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_60878 0 0 0 0 1 ACVRL1 chr12:52309009 3'AG 52309009 Downstream 34bp
chr19 806421 806421 1 + G T UCEC 806419 + 806399 806439 41 CTTTTCCAGGCCTTTCCGTTCCGAACGTCCACGGCGCCCTG CTTTTCCAGGCCTTTCCGTTCCTAACGTCCACGGCGCCCTG < 41bp 0.765712053182086 0.416891177902785 0.8283755 0.3416933 prediction 0.531424106364172 Functional Loss - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806419 chr19:806421 synonymous SNV . 0 23 hm5C_associated_SNPs_60879 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 14bp
chr21 33331199 33331199 1 + C T BLCA 33331197 + 33331177 33331217 41 TTGACCGGGACGCTGCCTTTCACGGTGGAGCCTTTCAGCCT TTGACCGGGACGCTGCCTTTCATGGTGGAGCCTTTCAGCCT < 41bp 0.792448819351039 0.526746718157498 0.8778147 0.90568125 prediction 0.531404202387081 Functional Loss - HUNK ENSG00000142149 CDS Human protein_coding chr21:33331197 chr21:33331199 nonsynonymous SNV 0.969 4 23 hm5C_associated_SNPs_60881 0 0 0 0 2 HUNK chr21:33331155 3'AG 33331155 Downstream 45bp
chr21 33331199 33331199 1 + C T BLCA 33331197 + 33331177 33331217 41 TTGACCGGGACGCTGCCTTTCACGGTGGAGCCTTTCAGCCT TTGACCGGGACGCTGCCTTTCATGGTGGAGCCTTTCAGCCT < 41bp 0.792448819351039 0.526746718157498 0.8778147 0.90568125 prediction 0.531404202387081 Functional Loss - HUNK ENSG00000142149 CDS Human protein_coding chr21:33331197 chr21:33331199 nonsynonymous SNV 0.969 4 23 hm5C_associated_SNPs_60881 0 0 0 0 2 HUNK chr21:33331282 5'GT 33331282 Upstream 84bp
chr2 27741783 27741783 1 + G T rs146285804 27741780 + 27741760 27741800 41 ATTAGCAACTCCAAGCTCTTCTGGCGGGCGCTGGCCATGCT ATTAGCAACTCCAAGCTCTTCTGTCGGGCGCTGGCCATGCT < 41bp 0.7656828856423 0.376109127722 0.15728024 0.04619637 prediction 0.5313657712846 Functional Loss - GCKR ENSG00000084734 CDS Human protein_coding chr2:27741780 chr2:27741783 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_60882 0 0 0 0 1 GCKR chr2:27741804 5'GT 27741804 Upstream 22bp
chr19 14516692 14516692 1 + A T KIRC 14516688 + 14516668 14516708 41 ACCACCATACACCTGCACCTCTGCATCTGCCTCTTCGTGGG ACCACCATACACCTGCACCTCTGCTTCTGCCTCTTCGTGGG < 41bp 0.882042080054039 0.61636038748851 0.09231806 0.03491199 prediction 0.531363385131059 Functional Loss - ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14516688 chr19:14516692 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_60884 0 0 1 0 1 ADGRE5 chr19:14516751 5'GT 14516751 Upstream 60bp
chr8 22105999 22105999 1 + C T STAD 22105997 + 22105977 22106017 41 CAGACTCTCTTTGGCAGTTCCTCGATGACCCCGGCCTGAGG CAGACTCTCTTTGGCAGTTCCTTGATGACCCCGGCCTGAGG < 41bp 0.813485122049553 0.547813626283531 0.90209323 0.08821282 prediction 0.531342991532044 Functional Loss - POLR3D ENSG00000168495 CDS Human protein_coding chr8:22105997 chr8:22105999 stopgain . 0 23 hm5C_associated_SNPs_60886 0 0 1 1 1 POLR3D chr8:22105994 3'AG 22105994 Downstream 6bp
chr5 60825903 60825903 1 + C T UCEC 60825901 + 60825881 60825921 41 CTACCCCATAAAAACATAACCTCGATAACCAATCTGGAGGG CTACCCCATAAAAACATAACCTTGATAACCAATCTGGAGGG < 41bp 0.765662029183579 0.470347615366576 0.5711955 0.05182311 prediction 0.531324058367157 Functional Loss - ZSWIM6 ENSG00000130449 CDS Human protein_coding chr5:60825901 chr5:60825903 nonsynonymous SNV 0.988 0 23 hm5C_associated_SNPs_60887 0 0 0 0 1 ZSWIM6 chr5:60825879 3'AG 60825879 Downstream 25bp
chr15 43669260 43669260 1 + G T LUSC 43669257 + 43669237 43669277 41 TATCACATGTCAACTACTTCCTAGACCAGGTATGCTGCCCA TATCACATGTCAACTACTTCCTATACCAGGTATGCTGCCCA < 41bp 0.765661990538553 0.387358344610887 0.10480353 0.074255526 prediction 0.531323981077106 Functional Loss - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43669257 chr15:43669260 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_60888 0 0 1 0 2 TUBGCP4 chr15:43669212 3'AG 43669212 Downstream 49bp
chr15 43669260 43669260 1 + G T LUSC 43669257 + 43669237 43669277 41 TATCACATGTCAACTACTTCCTAGACCAGGTATGCTGCCCA TATCACATGTCAACTACTTCCTATACCAGGTATGCTGCCCA < 41bp 0.765661990538553 0.387358344610887 0.10480353 0.074255526 prediction 0.531323981077106 Functional Loss - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43669257 chr15:43669260 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_60888 0 0 1 0 2 TUBGCP4 chr15:43669265 5'GT 43669265 Upstream 6bp
chr16 29851519 29851519 1 + C T LUSC 29851517 + 29851497 29851537 41 AGGGAGAGAAGTCTTTTTTCCTCCAGCCAGGAGAGCAGCTG AGGGAGAGAAGTCTTTTTTCCTTCAGCCAGGAGAGCAGCTG < 41bp 0.765661464365738 0.472275596230591 0.92455924 0.14553452 prediction 0.531322928731476 Functional Loss - MVP ENSG00000013364 CDS Human protein_coding chr16:29851517 chr16:29851519 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_60889 0 0 1 1 2 MVP chr16:29851499 3'AG 29851499 Downstream 21bp
chr16 29851519 29851519 1 + C T LUSC 29851517 + 29851497 29851537 41 AGGGAGAGAAGTCTTTTTTCCTCCAGCCAGGAGAGCAGCTG AGGGAGAGAAGTCTTTTTTCCTTCAGCCAGGAGAGCAGCTG < 41bp 0.765661464365738 0.472275596230591 0.92455924 0.14553452 prediction 0.531322928731476 Functional Loss - MVP ENSG00000013364 CDS Human protein_coding chr16:29851517 chr16:29851519 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_60889 0 0 1 1 2 MVP chr16:29851508 3'AG 29851508 Downstream 12bp
chr5 76326364 76326364 1 + G T rs144102562 76326361 + 76326341 76326381 41 CAGGAAAGTTTTCCGGTTTGCAGGCCGCGCACATCGGGCAG CAGGAAAGTTTTCCGGTTTGCAGTCCGCGCACATCGGGCAG < 41bp 0.765655802265279 0.422927154860318 0.4888935 0.09776971 prediction 0.531311604530559 Functional Loss - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76326361 chr5:76326364 unknown . 0 24 hm5C_associated_SNPs_60892 0 0 1 0 1 AGGF1 chr5:76326432 5'GT 76326432 Upstream 69bp
chr10 116046213 116046213 1 + G T UCEC 116046210 + 116046190 116046230 41 TGATGGTCTACTCGGATCCTCAGGATCTGTTCAACCAAATC TGATGGTCTACTCGGATCCTCAGTATCTGTTCAACCAAATC < 41bp 0.765654983783485 0.363958007031615 0.8818058 0.07902166 prediction 0.531309967566969 Functional Loss - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116046210 chr10:116046213 nonsynonymous SNV 0.199 3 24 hm5C_associated_SNPs_60893 0 0 0 0 1 VWA2 chr10:116046270 5'GT 116046270 Upstream 58bp
chr19 10794629 10794629 1 + C T UCEC 10794627 + 10794607 10794647 41 AGCTATGGGTACGGAGGCAACTCGGCGACAGCAGGCTACAG AGCTATGGGTACGGAGGCAACTTGGCGACAGCAGGCTACAG < 41bp 0.765644408532037 0.499440669631074 0.5843768 0.3991009 prediction 0.531288817064074 Functional Loss - ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794627 chr19:10794629 nonsynonymous SNV 0.958 1 23 hm5C_associated_SNPs_60894 0 0 1 0 2 ILF3 chr19:10794593 3'AG 10794593 Downstream 37bp
chr19 10794629 10794629 1 + C T UCEC 10794627 + 10794607 10794647 41 AGCTATGGGTACGGAGGCAACTCGGCGACAGCAGGCTACAG AGCTATGGGTACGGAGGCAACTTGGCGACAGCAGGCTACAG < 41bp 0.765644408532037 0.499440669631074 0.5843768 0.3991009 prediction 0.531288817064074 Functional Loss - ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794627 chr19:10794629 nonsynonymous SNV 0.958 1 23 hm5C_associated_SNPs_60894 0 0 1 0 2 ILF3 chr19:10794646 5'GT 10794646 Upstream 18bp
chrX 18668608 18668608 1 + C T SKCM 18668606 + 18668586 18668626 41 CGAGCCCTTCATCGTCCAATCTCCAGTCCTGCTCCCTATCC CGAGCCCTTCATCGTCCAATCTTCAGTCCTGCTCCCTATCC < 41bp 0.779349109410937 0.513715354857595 0.9502846 0.5471253 prediction 0.531267509106684 Functional Loss - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18668606 chrX:18668608 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_60896 0 0 0 0 1 CDKL5 chrX:18668530 3'AG 18668530 Downstream 79bp
chr5 176306367 176306367 1 + G T LUAD 176306365 + 176306345 176306385 41 GTGAAGCGGGGGTCCCAGCCCTGGTGGGCCCCAGTGCCTTC GTGAAGCGGGGGTCCCAGCCCTTGTGGGCCCCAGTGCCTTC < 41bp 0.87015625563755 0.604524598656034 0.123366445 0.059808403 prediction 0.531263313963032 Functional Loss - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176306365 chr5:176306367 synonymous SNV . 0 23 hm5C_associated_SNPs_60898 0 0 0 0 1 UNC5A chr5:176306311 3'AG 176306311 Downstream 57bp
chr12 21205160 21205160 1 + G T UCEC 21205158 + 21205138 21205178 41 TTACCTGTCACCTTGTCTAGCAGGATGCAAATCTTCAAGTG TTACCTGTCACCTTGTCTAGCATGATGCAAATCTTCAAGTG < 41bp 0.861795652488126 0.596166303047776 0.86793876 0.19733292 prediction 0.531258698880699 Functional Loss - SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21205158 chr12:21205160 stopgain 0.996 1 23 hm5C_associated_SNPs_60899 0 0 0 0 1 SLCO1B7 chr12:21205195 5'GT 21205195 Upstream 36bp
chr5 68558047 68558047 1 + C T SKCM 68558045 + 68558025 68558065 41 TCTTTAGGTGGTATCGGGCCCCCGAGTTACTATTTGGAGCT TCTTTAGGTGGTATCGGGCCCCTGAGTTACTATTTGGAGCT < 41bp 0.765629013490709 0.485759665717322 0.059788316 0.040904462 prediction 0.531258026981418 Functional Loss - CDK7 ENSG00000134058 CDS Human protein_coding chr5:68558045 chr5:68558047 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_60900 0 0 1 0 1 CDK7 chr5:68558032 3'AG 68558032 Downstream 16bp
chr9 132481562 132481562 1 + G T SARC 132481560 + 132481540 132481580 41 CCGCCAAGCGGAAGAAGAAGCAGCGGCGGAACCGCACCACG CCGCCAAGCGGAAGAAGAAGCATCGGCGGAACCGCACCACG < 41bp 0.882564427962036 0.616949241025661 0.7961763 0.38226837 prediction 0.53123037387275 Functional Loss - PRRX2 ENSG00000167157 CDS Human protein_coding chr9:132481560 chr9:132481562 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_60905 0 0 0 0 1 PRRX2 chr9:132481510 3'AG 132481510 Downstream 53bp
chr3 185347616 185347616 1 + A T LUAD 185347612 + 185347592 185347632 41 AGAAGATGGTGTGGGAAATCCTTCATCAGCAGTTGCTGTGA AGAAGATGGTGTGGGAAATCCTTCTTCAGCAGTTGCTGTGA < 41bp 0.765612029952947 0.435779424388876 0.6127944 0.13111696 prediction 0.531224059905893 Functional Loss - SENP2 ENSG00000163904 CDS Human protein_coding chr3:185347612 chr3:185347616 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_60906 0 0 1 0 1 SENP2 chr3:185347570 3'AG 185347570 Downstream 47bp
chr20 32371563 32371563 1 + G C HNSC 32371559 + 32371539 32371579 41 TGTTTCCTTGTGAACGCTACCTGCGGCGTCATCTGCCCACC TGTTTCCTTGTGAACGCTACCTGCCGCGTCATCTGCCCACC < 41bp 0.819785007805223 0.554205579859007 0.19623947 0.09821278 prediction 0.531158855892433 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32371559 chr20:32371563 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_60908 0 0 0 0 1 ZNF341 chr20:32371538 3'AG 32371538 Downstream 26bp
chr6 44198149 44198149 1 + G C COAD 44198145 + 44198125 44198165 41 GGCCTTCTGCCTGCCAGCTACACGGCCCCCATCATGAGTGG GGCCTTCTGCCTGCCAGCTACACGCCCCCCATCATGAGTGG < 41bp 0.790067649875633 0.524492642768535 0.49962533 0.21813992 prediction 0.531150014214195 Functional Loss - SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44198145 chr6:44198149 nonsynonymous SNV 0.946 3 25 hm5C_associated_SNPs_60909 0 0 1 1 1 SLC29A1 chr6:44198084 3'AG 44198084 Downstream 66bp
chr8 22106630 22106630 1 + A T LUAD 22106626 + 22106606 22106646 41 TCCCAAAGCAGCCAGGAAGACTCCAGGCCTCCCGAAGGATG TCCCAAAGCAGCCAGGAAGACTCCTGGCCTCCCGAAGGATG < 41bp 0.76556147997047 0.421063086510385 0.90744877 0.30384734 prediction 0.53112295994094 Functional Loss - POLR3D ENSG00000168495 CDS Human protein_coding chr8:22106626 chr8:22106630 synonymous SNV . 0 25 hm5C_associated_SNPs_60914 0 0 1 0 1 POLR3D chr8:22106557 3'AG 22106557 Downstream 74bp
chr8 22106628 22106628 1 + C T SKCM 22106626 + 22106606 22106646 41 TCCCAAAGCAGCCAGGAAGACTCCAGGCCTCCCGAAGGATG TCCCAAAGCAGCCAGGAAGACTTCAGGCCTCCCGAAGGATG < 41bp 0.76556147997047 0.478887755230597 0.90744877 0.18020537 prediction 0.53112295994094 Functional Loss - POLR3D ENSG00000168495 CDS Human protein_coding chr8:22106626 chr8:22106628 nonsynonymous SNV 0.732 1 23 hm5C_associated_SNPs_60915 0 0 1 0 1 POLR3D chr8:22106557 3'AG 22106557 Downstream 72bp
chr7 141311018 141311018 1 + G T UCEC 141311015 + 141310995 141311035 41 ACAGATTATGAGGGACAAGCCAAGAAACTCCTGGAACTGAT ACAGATTATGAGGGACAAGCCAATAAACTCCTGGAACTGAT < 41bp 0.765552714003713 0.403264230758788 0.22466686 0.34435844 prediction 0.531105428007426 Functional Loss - AGK ENSG00000006530 CDS Human protein_coding chr7:141311015 chr7:141311018 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_60917 0 0 1 1 2 AGK chr7:141310995 3'AG 141310995 Downstream 24bp
chr7 141311018 141311018 1 + G T UCEC 141311015 + 141310995 141311035 41 ACAGATTATGAGGGACAAGCCAAGAAACTCCTGGAACTGAT ACAGATTATGAGGGACAAGCCAATAAACTCCTGGAACTGAT < 41bp 0.765552714003713 0.403264230758788 0.22466686 0.34435844 prediction 0.531105428007426 Functional Loss - AGK ENSG00000006530 CDS Human protein_coding chr7:141311015 chr7:141311018 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_60917 0 0 1 1 2 AGK chr7:141311087 5'GT 141311087 Upstream 70bp
chr16 2514567 2514567 1 + G T CESC 2514565 + 2514545 2514585 41 CCCTGGTAAGCGCTGCACAGCCGCAGGGGCCGCCCTGGCTG CCCTGGTAAGCGCTGCACAGCCTCAGGGGCCGCCCTGGCTG < 41bp 0.854564806449729 0.589013288572799 0.28274995 0.12859762 prediction 0.53110303575386 Functional Loss - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2514565 chr16:2514567 synonymous SNV . 0 23 hm5C_associated_SNPs_60918 0 0 1 0 1 C16orf59 chr16:2514523 3'AG 2514523 Downstream 45bp
chr4 155718052 155718052 1 + C T SKCM 155718050 + 155718030 155718070 41 AAGGAAATTTGGCGGTCCTCCTCCAGGTGTGGATTTGTTTA AAGGAAATTTGGCGGTCCTCCTTCAGGTGTGGATTTGTTTA < 41bp 0.807199569411635 0.541650994643242 0.94493866 0.053767174 prediction 0.531097149536785 Functional Loss - RBM46 ENSG00000151962 CDS Human protein_coding chr4:155718050 chr4:155718052 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_60919 0 0 0 0 1 RBM46 chr4:155718055 5'GT 155718055 Upstream 4bp
chr11 76830153 76830153 1 + G T BLCA 76830151 + 76830131 76830171 41 GGCCAAAGCGGTCTACGCGCCGGGAGGGCAAGGGTGAGAAC GGCCAAAGCGGTCTACGCGCCGTGAGGGCAAGGGTGAGAAC < 41bp 0.881425382017037 0.615884202886109 0.74267936 0.16569644 prediction 0.531082358261856 Functional Loss - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76830151 chr11:76830153 synonymous SNV . 0 23 hm5C_associated_SNPs_60920 0 0 0 0 2 CAPN5 chr11:76830076 3'AG 76830076 Downstream 78bp
chr11 76830153 76830153 1 + G T BLCA 76830151 + 76830131 76830171 41 GGCCAAAGCGGTCTACGCGCCGGGAGGGCAAGGGTGAGAAC GGCCAAAGCGGTCTACGCGCCGTGAGGGCAAGGGTGAGAAC < 41bp 0.881425382017037 0.615884202886109 0.74267936 0.16569644 prediction 0.531082358261856 Functional Loss - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76830151 chr11:76830153 synonymous SNV . 0 23 hm5C_associated_SNPs_60920 0 0 0 0 2 CAPN5 chr11:76830198 5'GT 76830198 Upstream 46bp
chr4 166935601 166935601 1 + G T LUSC 166935598 + 166935578 166935618 41 TTTTTTTCAGGGGGATGTTTCTGGATACCATTCTCCCCTCC TTTTTTTCAGGGGGATGTTTCTGTATACCATTCTCCCCTCC < 41bp 0.897555734687538 0.632033892202613 0.75714314 0.26582298 prediction 0.53104368496985 Functional Loss - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166935598 chr4:166935601 nonsynonymous SNV 0.983 3 24 hm5C_associated_SNPs_60927 0 0 0 0 1 TLL1 chr4:166935588 3'AG 166935588 Downstream 14bp
chr2 173825907 173825907 1 + C T LGG 173825905 + 173825885 173825925 41 TTTACGAAATGCCATTCTCTCTCGAGCACCTCACATGATAA TTTACGAAATGCCATTCTCTCTTGAGCACCTCACATGATAA < 41bp 0.780695037113997 0.515202329350471 0.19846624 0.054746926 prediction 0.530985415527053 Functional Loss - RAPGEF4 ENSG00000091428 CDS Human protein_coding chr2:173825905 chr2:173825907 stopgain 1.000 0 23 hm5C_associated_SNPs_60931 0 0 0 0 2 RAPGEF4 chr2:173825850 3'AG 173825850 Downstream 58bp
chr2 173825907 173825907 1 + C T LGG 173825905 + 173825885 173825925 41 TTTACGAAATGCCATTCTCTCTCGAGCACCTCACATGATAA TTTACGAAATGCCATTCTCTCTTGAGCACCTCACATGATAA < 41bp 0.780695037113997 0.515202329350471 0.19846624 0.054746926 prediction 0.530985415527053 Functional Loss - RAPGEF4 ENSG00000091428 CDS Human protein_coding chr2:173825905 chr2:173825907 stopgain 1.000 0 23 hm5C_associated_SNPs_60931 0 0 0 0 2 RAPGEF4 chr2:173825956 5'GT 173825956 Upstream 50bp
chr11 129993557 129993557 1 + C T OV 129993555 + 129993535 129993575 41 GCCCTGCCGGGCCGTGATGCCTCGTTGGTACTTCGACCTCT GCCCTGCCGGGCCGTGATGCCTTGTTGGTACTTCGACCTCT < 41bp 0.785776381656036 0.520288009908544 0.144862 0.13388774 prediction 0.530976743494983 Functional Loss - APLP2 ENSG00000084234 CDS Human protein_coding chr11:129993555 chr11:129993557 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_60933 0 0 1 0 1 APLP2 chr11:129993507 3'AG 129993507 Downstream 51bp
chr21 33038808 33038808 1 + C T UCEC 33038806 + 33038786 33038826 41 TTAATCCTCTATCCAGAAAACACGGTGGGCCAAAGGATGAA TTAATCCTCTATCCAGAAAACATGGTGGGCCAAAGGATGAA < 41bp 0.768792275658014 0.503313343607358 0.28175473 0.2941347 prediction 0.530957864101312 Functional Loss - SOD1 ENSG00000142168 CDS Human protein_coding chr21:33038806 chr21:33038808 synonymous SNV . 0 23 hm5C_associated_SNPs_60935 0 0 1 0 2 SOD1 chr21:33038762 3'AG 33038762 Downstream 47bp
chr21 33038808 33038808 1 + C T UCEC 33038806 + 33038786 33038826 41 TTAATCCTCTATCCAGAAAACACGGTGGGCCAAAGGATGAA TTAATCCTCTATCCAGAAAACATGGTGGGCCAAAGGATGAA < 41bp 0.768792275658014 0.503313343607358 0.28175473 0.2941347 prediction 0.530957864101312 Functional Loss - SOD1 ENSG00000142168 CDS Human protein_coding chr21:33038806 chr21:33038808 synonymous SNV . 0 23 hm5C_associated_SNPs_60935 0 0 1 0 2 SOD1 chr21:33038831 5'GT 33038831 Upstream 24bp
chr22 21369492 21369492 1 + G T UCEC 21369490 + 21369470 21369510 41 CCGCAGCTAGCAGGAGCTGGCAGCATGGGCTCCCCAGGGGC CCGCAGCTAGCAGGAGCTGGCATCATGGGCTCCCCAGGGGC < 41bp 0.877273071645971 0.611817671250408 0.9194883 0.81428 prediction 0.530910800791127 Functional Loss - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21369490 chr22:21369492 nonsynonymous SNV 0.107 1 23 hm5C_associated_SNPs_60940 0 0 0 0 1 P2RX6 chr22:21369549 5'GT 21369549 Upstream 58bp
chr15 42127420 42127420 1 + G T rs75094146 42127418 + 42127398 42127438 41 TGCCCTGGGCCTCCGAAGCCCTGGGTGAGTGGAGGTGGGGT TGCCCTGGGCCTCCGAAGCCCTTGGTGAGTGGAGGTGGGGT < 41bp 0.765454759180944 0.422142964696525 0.23244378 0.15258601 prediction 0.530909518361887 Functional Loss - JMJD7;JMJD7-PLA2G4B ENSG00000168970;ENSG00000243708;ENSG00000243789 CDS Human other chr15:42127418 chr15:42127420 synonymous SNV . 0 23 hm5C_associated_SNPs_60941 0 0 1 0 1 JMJD7;JMJD7-PLA2G4B chr15:42127421 5'GT 42127421 Upstream 2bp
chr19 35831832 35831832 1 + G C HNSC 35831831 + 35831811 35831851 41 TTCAAAACCCCATGCCGATTCGAGAAGGAGACACAGTGACC TTCAAAACCCCATGCCGATTCCAGAAGGAGACACAGTGACC < 41bp 0.765452309824805 0.46071279130485 0.12449852 0.10406557 prediction 0.530904619649611 Functional Loss - CD22 ENSG00000012124 CDS Human protein_coding chr19:35831831 chr19:35831832 nonsynonymous SNV 0.822 2 22 hm5C_associated_SNPs_60942 0 0 0 0 1 CD22 chr19:35831784 3'AG 35831784 Downstream 49bp
chr5 94903724 94903724 1 + G T LUAD 94903722 + 94903702 94903742 41 GAACACAGAAATTTGGGAAACTGGACTATACTTCAGGACAT GAACACAGAAATTTGGGAAACTTGACTATACTTCAGGACAT < 41bp 0.835266916819239 0.569820929580554 0.84695685 0.4460369 prediction 0.530891974477371 Functional Loss - ARSK ENSG00000164291 CDS Human protein_coding chr5:94903722 chr5:94903724 synonymous SNV . 0 23 hm5C_associated_SNPs_60945 0 0 1 1 1 ARSK chr5:94903753 5'GT 94903753 Upstream 30bp
chr19 15164702 15164702 1 + G T BLCA 15164700 + 15164680 15164720 41 TGGAGAATCTCTTCGAGGCCCTGAACAACAAGAACTGCCAG TGGAGAATCTCTTCGAGGCCCTTAACAACAAGAACTGCCAG < 41bp 0.765437160792277 0.417228430836614 0.09423965 0.13165954 prediction 0.530874321584554 Functional Loss - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15164700 chr19:15164702 synonymous SNV . 0 23 hm5C_associated_SNPs_60947 0 0 0 0 1 CASP14 chr19:15164769 5'GT 15164769 Upstream 68bp
chr4 69688070 69688070 1 + G T UCEC 69688068 + 69688048 69688088 41 GTCAATGGTCAGTAACATGACAGAAGAAAGGGCCAACGTAA GTCAATGGTCAGTAACATGACATAAGAAAGGGCCAACGTAA < 41bp 0.765434496925688 0.438123279992797 0.15230858 0.069639325 prediction 0.530868993851376 Functional Loss - UGT2B10 ENSG00000109181 CDS Human protein_coding chr4:69688068 chr4:69688070 stopgain 0.009 0 23 hm5C_associated_SNPs_60948 0 0 1 0 1 UGT2B10 chr4:69688120 5'GT 69688120 Upstream 51bp
chr2 95542340 95542340 1 + A T SKCM 95542336 + 95542316 95542356 41 GGAGCTGAACATGTCCCTCACAGCACTGCGAGAGAAGCTTC GGAGCTGAACATGTCCCTCACAGCTCTGCGAGAGAAGCTTC < 41bp 0.836646268881576 0.571230194928179 0.5002431 0.31389767 prediction 0.530832147906794 Functional Loss - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95542336 chr2:95542340 synonymous SNV . 0 25 hm5C_associated_SNPs_60950 0 0 0 0 1 TEKT4 chr2:95542298 3'AG 95542298 Downstream 43bp
chr6 17426833 17426833 1 + C T SKCM 17426831 + 17426811 17426851 41 TTTCCCCAAGGTGTGGCACCCTCCGTGGAAGCCTTTGACAA TTTCCCCAAGGTGTGGCACCCTTCGTGGAAGCCTTTGACAA < 41bp 0.76540892489074 0.47623385965106 0.10672948 0.047539502 prediction 0.530817849781481 Functional Loss - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17426831 chr6:17426833 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_60951 0 0 0 0 2 CAP2 chr6:17426821 3'AG 17426821 Downstream 13bp
chr6 17426833 17426833 1 + C T SKCM 17426831 + 17426811 17426851 41 TTTCCCCAAGGTGTGGCACCCTCCGTGGAAGCCTTTGACAA TTTCCCCAAGGTGTGGCACCCTTCGTGGAAGCCTTTGACAA < 41bp 0.76540892489074 0.47623385965106 0.10672948 0.047539502 prediction 0.530817849781481 Functional Loss - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17426831 chr6:17426833 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_60951 0 0 0 0 2 CAP2 chr6:17426921 5'GT 17426921 Upstream 89bp
chr2 119726837 119726837 1 + G T GBM 119726834 + 119726814 119726854 41 GCGCTGGGCTGCTGGTGGTCCAAGGTAAAGCAGGCTTGGTC GCGCTGGGCTGCTGGTGGTCCAATGTAAAGCAGGCTTGGTC < 41bp 0.765406093513209 0.492151834428917 0.6311053 0.40999877 prediction 0.530812187026418 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119726834 chr2:119726837 nonsynonymous SNV 0.226 5 24 hm5C_associated_SNPs_60953 0 0 0 0 1 MARCO chr2:119726837 5'GT 119726837 Upstream 1bp
chr18 77097441 77097441 1 + G T STAD 77097439 + 77097419 77097459 41 GCTGGAGATGCTGCGCAACGCCGGGATCAAGGTACTGCAGG GCTGGAGATGCTGCGCAACGCCTGGATCAAGGTACTGCAGG < 41bp 0.765403247619376 0.431010536250233 0.86149657 0.22256017 prediction 0.530806495238752 Functional Loss - ATP9B ENSG00000166377 CDS Human protein_coding chr18:77097439 chr18:77097441 nonsynonymous SNV 0.387 5 23 hm5C_associated_SNPs_60954 0 0 1 0 1 ATP9B chr18:77097449 5'GT 77097449 Upstream 9bp
chr3 39433056 39433056 1 + G T LUSC 39433053 + 39433033 39433073 41 AGTCATGCTGGGGGTGGGCTCTCGCTCTGTTGCAGGGGTCT AGTCATGCTGGGGGTGGGCTCTCTCTCTGTTGCAGGGGTCT < 41bp 0.765398918166627 0.373535298267997 0.3166001 0.25712585 prediction 0.530797836333254 Functional Loss - SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39433053 chr3:39433056 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_60955 0 0 1 0 1 SLC25A38 chr3:39433111 5'GT 39433111 Upstream 56bp
chr20 3556571 3556571 1 + G T SARC 3556568 + 3556548 3556588 41 TGCAATGACCATTGTGTCCCCAGGAACCACAGCTGCTCAGA TGCAATGACCATTGTGTCCCCAGTAACCACAGCTGCTCAGA < 41bp 0.765392331863307 0.376830078406311 0.89466035 0.3801354 prediction 0.530784663726614 Functional Loss - ATRN ENSG00000088812 CDS Human protein_coding chr20:3556568 chr20:3556571 nonsynonymous SNV 0.952 0 24 hm5C_associated_SNPs_60958 0 0 1 0 2 ATRN chr20:3556474 3'AG 3556474 Downstream 98bp
chr20 3556571 3556571 1 + G T SARC 3556568 + 3556548 3556588 41 TGCAATGACCATTGTGTCCCCAGGAACCACAGCTGCTCAGA TGCAATGACCATTGTGTCCCCAGTAACCACAGCTGCTCAGA < 41bp 0.765392331863307 0.376830078406311 0.89466035 0.3801354 prediction 0.530784663726614 Functional Loss - ATRN ENSG00000088812 CDS Human protein_coding chr20:3556568 chr20:3556571 nonsynonymous SNV 0.952 0 24 hm5C_associated_SNPs_60958 0 0 1 0 2 ATRN chr20:3556595 5'GT 3556595 Upstream 25bp
chr2 99995567 99995567 1 + G T UCEC 99995564 + 99995544 99995584 41 CGTACTTGGGCATGTGGACACAGGGAAGACAAAAATTCTAG CGTACTTGGGCATGTGGACACAGTGAAGACAAAAATTCTAG < 41bp 0.765386008390109 0.394105830588292 0.42855668 0.31005168 prediction 0.530772016780217 Functional Loss - EIF5B ENSG00000158417 CDS Human protein_coding chr2:99995564 chr2:99995567 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_60960 0 0 1 0 2 EIF5B chr2:99995482 3'AG 99995482 Downstream 86bp
chr2 99995567 99995567 1 + G T UCEC 99995564 + 99995544 99995584 41 CGTACTTGGGCATGTGGACACAGGGAAGACAAAAATTCTAG CGTACTTGGGCATGTGGACACAGTGAAGACAAAAATTCTAG < 41bp 0.765386008390109 0.394105830588292 0.42855668 0.31005168 prediction 0.530772016780217 Functional Loss - EIF5B ENSG00000158417 CDS Human protein_coding chr2:99995564 chr2:99995567 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_60960 0 0 1 0 2 EIF5B chr2:99995589 5'GT 99995589 Upstream 23bp
chr21 35742812 35742812 1 + A C UCEC 35742808 + 35742788 35742828 41 TATCCAATTTCACACAGACGCTGGAAGACGTCTTCCGAAGG TATCCAATTTCACACAGACGCTGGCAGACGTCTTCCGAAGG < 41bp 0.90923586048287 0.643856175719554 0.31790376 0.10732031 prediction 0.530759369526633 Functional Loss - KCNE2 ENSG00000159197 CDS Human protein_coding chr21:35742808 chr21:35742812 nonsynonymous SNV 0.660 5 25 hm5C_associated_SNPs_60962 0 0 0 0 1 KCNE2 chr21:35742766 3'AG 35742766 Downstream 47bp
chr8 38834180 38834180 1 + G T UCEC 38834178 + 38834158 38834198 41 AGTGGATTGAGGTGGTGCTCCAGAATGGGGCCCGTTATGAA AGTGGATTGAGGTGGTGCTCCATAATGGGGCCCGTTATGAA < 41bp 0.7653691012406 0.423135383455543 0.29765314 0.13155141 prediction 0.5307382024812 Functional Loss - HTRA4 ENSG00000169495 CDS Human protein_coding chr8:38834178 chr8:38834180 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_60963 0 0 0 0 1 HTRA4 chr8:38834258 5'GT 38834258 Upstream 79bp
chr22 20936960 20936960 1 + G T LUSC 20936958 + 20936938 20936978 41 CGGGCCAGCAGGTGCAGACCCCGCAGTCGATGCCCCCTCCC CGGGCCAGCAGGTGCAGACCCCTCAGTCGATGCCCCCTCCC < 41bp 0.860760700489559 0.59540578707699 0.578247 0.34898037 prediction 0.530709826825137 Functional Loss - MED15 ENSG00000099917 CDS Human protein_coding chr22:20936958 chr22:20936960 synonymous SNV . 0 23 hm5C_associated_SNPs_60966 0 0 1 0 4 MED15 chr22:20936898 3'AG 20936898 Downstream 63bp
chr22 20936960 20936960 1 + G T LUSC 20936958 + 20936938 20936978 41 CGGGCCAGCAGGTGCAGACCCCGCAGTCGATGCCCCCTCCC CGGGCCAGCAGGTGCAGACCCCTCAGTCGATGCCCCCTCCC < 41bp 0.860760700489559 0.59540578707699 0.578247 0.34898037 prediction 0.530709826825137 Functional Loss - MED15 ENSG00000099917 CDS Human protein_coding chr22:20936958 chr22:20936960 synonymous SNV . 0 23 hm5C_associated_SNPs_60966 0 0 1 0 4 MED15 chr22:20936946 3'AG 20936946 Downstream 15bp
chr22 20936960 20936960 1 + G T LUSC 20936958 + 20936938 20936978 41 CGGGCCAGCAGGTGCAGACCCCGCAGTCGATGCCCCCTCCC CGGGCCAGCAGGTGCAGACCCCTCAGTCGATGCCCCCTCCC < 41bp 0.860760700489559 0.59540578707699 0.578247 0.34898037 prediction 0.530709826825137 Functional Loss - MED15 ENSG00000099917 CDS Human protein_coding chr22:20936958 chr22:20936960 synonymous SNV . 0 23 hm5C_associated_SNPs_60966 0 0 1 0 4 MED15 chr22:20936949 3'AG 20936949 Downstream 12bp
chr22 20936960 20936960 1 + G T LUSC 20936958 + 20936938 20936978 41 CGGGCCAGCAGGTGCAGACCCCGCAGTCGATGCCCCCTCCC CGGGCCAGCAGGTGCAGACCCCTCAGTCGATGCCCCCTCCC < 41bp 0.860760700489559 0.59540578707699 0.578247 0.34898037 prediction 0.530709826825137 Functional Loss - MED15 ENSG00000099917 CDS Human protein_coding chr22:20936958 chr22:20936960 synonymous SNV . 0 23 hm5C_associated_SNPs_60966 0 0 1 0 4 MED15 chr22:20937034 5'GT 20937034 Upstream 75bp
chr15 99901668 99901668 1 + G T LUSC 99901665 + 99901645 99901685 41 ATGATCACGTCCTCCCTCTGCAGGAATTGGCTATGAGAGGG ATGATCACGTCCTCCCTCTGCAGTAATTGGCTATGAGAGGG < 41bp 0.902114691041822 0.636767735270859 0.47615618 0.05778262 prediction 0.530693911541926 Functional Loss - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99901665 chr15:99901668 stopgain 0.965 1 24 hm5C_associated_SNPs_60970 0 0 1 0 1 LRRC28 chr15:99901716 5'GT 99901716 Upstream 49bp
chr12 68043620 68043620 1 + G T LUAD 68043618 + 68043598 68043638 41 TTCGTCAGCTTCAGGCTTCCCCGGGGCTCGGTGCAGGGGCC TTCGTCAGCTTCAGGCTTCCCCTGGGCTCGGTGCAGGGGCC < 41bp 0.881574256408846 0.616230195035748 0.9080435 0.35327727 prediction 0.530688122746195 Functional Loss - DYRK2 ENSG00000127334 CDS Human protein_coding chr12:68043618 chr12:68043620 synonymous SNV . 0 23 hm5C_associated_SNPs_60971 0 0 1 0 1 DYRK2 chr12:68043577 3'AG 68043577 Downstream 44bp
chr15 42109920 42109920 1 + G T UCEC 42109917 + 42109897 42109937 41 AGTACACGGCTATCGGCTGCCAGGACCGAAATATTCGGTGG AGTACACGGCTATCGGCTGCCAGTACCGAAATATTCGGTGG < 41bp 0.811019011505532 0.5456887366111 0.8968638 0.31538242 prediction 0.530660549788864 Functional Loss - MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42109917 chr15:42109920 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_60973 0 0 0 0 1 MAPKBP1 chr15:42109933 5'GT 42109933 Upstream 14bp
chr19 57931022 57931022 1 + G T UCEC 57931019 + 57930999 57931039 41 TTAGGTTGTTGGCATGGAGCCAAGGATGAGGAGGCACCTTC TTAGGTTGTTGGCATGGAGCCAATGATGAGGAGGCACCTTC < 41bp 0.765318171534527 0.383109680696242 0.621816 0.39617047 prediction 0.530636343069054 Functional Loss - ZNF17 ENSG00000186272;ENSG00000269533 CDS Human other chr19:57931019 chr19:57931022 nonsynonymous SNV 0.230 0 24 hm5C_associated_SNPs_60975 0 0 1 0 1 ZNF17 chr19:57931003 3'AG 57931003 Downstream 20bp
chr17 21206544 21206544 1 + G T UCEC 21206542 + 21206522 21206562 41 AGCAAGCTGTCGGTGATCCACAGAGGTCAGTGCCCGGCAGC AGCAAGCTGTCGGTGATCCACATAGGTCAGTGCCCGGCAGC < 41bp 0.88597019864759 0.620667335023061 0.895937 0.17492169 prediction 0.530605727249058 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21206542 chr17:21206544 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_60977 0 0 1 0 2 MAP2K3 chr17:21206495 3'AG 21206495 Downstream 50bp
chr17 21206544 21206544 1 + G T UCEC 21206542 + 21206522 21206562 41 AGCAAGCTGTCGGTGATCCACAGAGGTCAGTGCCCGGCAGC AGCAAGCTGTCGGTGATCCACATAGGTCAGTGCCCGGCAGC < 41bp 0.88597019864759 0.620667335023061 0.895937 0.17492169 prediction 0.530605727249058 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21206542 chr17:21206544 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_60977 0 0 1 0 2 MAP2K3 chr17:21206546 5'GT 21206546 Upstream 3bp
chr13 114201633 114201633 1 + C T COAD 114201631 + 114201611 114201651 41 ACAGGGCTCCACGTGTTCCCCACGTTTGTGGCGTACGAGCT ACAGGGCTCCACGTGTTCCCCATGTTTGTGGCGTACGAGCT < 41bp 0.765295130439711 0.499928701078423 0.12663442 0.18530211 prediction 0.530590260879423 Functional Loss - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114201631 chr13:114201633 nonsynonymous SNV 0.385 2 23 hm5C_associated_SNPs_60979 0 0 0 0 2 TMCO3 chr13:114201615 3'AG 114201615 Downstream 19bp
chr13 114201633 114201633 1 + C T COAD 114201631 + 114201611 114201651 41 ACAGGGCTCCACGTGTTCCCCACGTTTGTGGCGTACGAGCT ACAGGGCTCCACGTGTTCCCCATGTTTGTGGCGTACGAGCT < 41bp 0.765295130439711 0.499928701078423 0.12663442 0.18530211 prediction 0.530590260879423 Functional Loss - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114201631 chr13:114201633 nonsynonymous SNV 0.385 2 23 hm5C_associated_SNPs_60979 0 0 0 0 2 TMCO3 chr13:114201694 5'GT 114201694 Upstream 62bp
chr1 160720137 160720137 1 + C T SKCM 160720135 + 160720115 160720155 41 CCTCCATGGTCCTCCTGTGTCTCCTGTTGGTGCCCCTCCTG CCTCCATGGTCCTCCTGTGTCTTCTGTTGGTGCCCCTCCTG < 41bp 0.768043418598177 0.502753349270971 0.1423505 0.3073542 prediction 0.53058013865441 Functional Loss - SLAMF7 ENSG00000026751 CDS Human protein_coding chr1:160720135 chr1:160720137 synonymous SNV . 0 23 hm5C_associated_SNPs_60982 0 0 0 0 2 SLAMF7 chr1:160720094 3'AG 160720094 Downstream 44bp
chr1 160720137 160720137 1 + C T SKCM 160720135 + 160720115 160720155 41 CCTCCATGGTCCTCCTGTGTCTCCTGTTGGTGCCCCTCCTG CCTCCATGGTCCTCCTGTGTCTTCTGTTGGTGCCCCTCCTG < 41bp 0.768043418598177 0.502753349270971 0.1423505 0.3073542 prediction 0.53058013865441 Functional Loss - SLAMF7 ENSG00000026751 CDS Human protein_coding chr1:160720135 chr1:160720137 synonymous SNV . 0 23 hm5C_associated_SNPs_60982 0 0 0 0 2 SLAMF7 chr1:160720213 5'GT 160720213 Upstream 77bp
chr3 9768870 9768870 1 + G T UCEC 9768868 + 9768848 9768888 41 ACGCAGAGCGGGACATCGTTCAGGTAGACCTGACGTGGGAG ACGCAGAGCGGGACATCGTTCATGTAGACCTGACGTGGGAG < 41bp 0.765277368866838 0.41954121266834 0.44356543 0.14632517 prediction 0.530554737733675 Functional Loss - CPNE9 ENSG00000144550 CDS Human protein_coding chr3:9768868 chr3:9768870 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_60984 0 0 0 0 2 CPNE9 chr3:9768797 3'AG 9768797 Downstream 74bp
chr3 9768870 9768870 1 + G T UCEC 9768868 + 9768848 9768888 41 ACGCAGAGCGGGACATCGTTCAGGTAGACCTGACGTGGGAG ACGCAGAGCGGGACATCGTTCATGTAGACCTGACGTGGGAG < 41bp 0.765277368866838 0.41954121266834 0.44356543 0.14632517 prediction 0.530554737733675 Functional Loss - CPNE9 ENSG00000144550 CDS Human protein_coding chr3:9768868 chr3:9768870 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_60984 0 0 0 0 2 CPNE9 chr3:9768870 5'GT 9768870 Upstream 1bp
chr20 9318701 9318701 1 + G T KIRC 9318698 + 9318678 9318718 41 CCTCATCAACAGTATTCGGTCGGGAGCCATACCAAAGGTAC CCTCATCAACAGTATTCGGTCGGTAGCCATACCAAAGGTAC < 41bp 0.765270812777069 0.404837645160112 0.6707116 0.14841172 prediction 0.530541625554137 Functional Loss - PLCB4 ENSG00000101333 CDS Human protein_coding chr20:9318698 chr20:9318701 nonsynonymous SNV 0.830 5 24 hm5C_associated_SNPs_60985 0 0 0 0 2 PLCB4 chr20:9318655 3'AG 9318655 Downstream 47bp
chr20 9318701 9318701 1 + G T KIRC 9318698 + 9318678 9318718 41 CCTCATCAACAGTATTCGGTCGGGAGCCATACCAAAGGTAC CCTCATCAACAGTATTCGGTCGGTAGCCATACCAAAGGTAC < 41bp 0.765270812777069 0.404837645160112 0.6707116 0.14841172 prediction 0.530541625554137 Functional Loss - PLCB4 ENSG00000101333 CDS Human protein_coding chr20:9318698 chr20:9318701 nonsynonymous SNV 0.830 5 24 hm5C_associated_SNPs_60985 0 0 0 0 2 PLCB4 chr20:9318714 5'GT 9318714 Upstream 14bp
chr17 7942598 7942598 1 + G T HNSC 7942596 + 7942576 7942616 41 CCACTGCCCCTGGACAATCTCGGCAAGGAGTTCACTGCGGG CCACTGCCCCTGGACAATCTCGTCAAGGAGTTCACTGCGGG < 41bp 0.868843979313501 0.603574609492771 0.88699436 0.16866261 prediction 0.530538739641461 Functional Loss - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7942596 chr17:7942598 nonsynonymous SNV 0.983 4 23 hm5C_associated_SNPs_60987 0 0 0 0 1 ALOX15B chr17:7942620 5'GT 7942620 Upstream 23bp
chr16 4383398 4383398 1 + G T rs72766563 4383396 + 4383376 4383416 41 GAAGGTGGAGGGACGCTTTTCAGCAGCCCCTCTCGTGGACC GAAGGTGGAGGGACGCTTTTCATCAGCCCCTCTCGTGGACC < 41bp 0.874966500960851 0.609699275827987 0.65520084 0.16792434 prediction 0.53053445026573 Functional Loss - GLIS2 ENSG00000126603 CDS Human protein_coding chr16:4383396 chr16:4383398 nonsynonymous SNV 0.974 0 23 hm5C_associated_SNPs_60989 2 0 0 0 1 GLIS2 chr16:4383348 3'AG 4383348 Downstream 51bp
chr2 96071494 96071494 1 + C T STAD 96071492 + 96071472 96071512 41 AATGCCTTTGACCCCACACTCCCGAAGACGATGACGCAGTT AATGCCTTTGACCCCACACTCCTGAAGACGATGACGCAGTT < 41bp 0.765259227622564 0.488792229990911 0.3917293 0.26004374 prediction 0.530518455245127 Functional Loss - FAHD2A ENSG00000115042 CDS Human protein_coding chr2:96071492 chr2:96071494 nonsynonymous SNV 0.594 4 23 hm5C_associated_SNPs_60991 0 0 0 0 1 FAHD2A chr2:96071551 5'GT 96071551 Upstream 58bp
chr19 38085982 38085982 1 + G T rs16974142 38085980 + 38085960 38086000 41 GTCATCCCGGGCTAGAAGAGCTGCAAAAGGCTGTCAGGTAA GTCATCCCGGGCTAGAAGAGCTTCAAAAGGCTGTCAGGTAA < 41bp 0.765253605558349 0.451869509339326 0.8692315 0.38503623 prediction 0.530507211116698 Functional Loss - ZNF540 ENSG00000171817 UTR5 Human protein_coding chr19:38085980 chr19:38085982 . . 0 23 hm5C_associated_SNPs_60992 0 0 0 0 1 ZNF540 chr19:38085996 5'GT 38085996 Upstream 15bp
chr8 38884270 38884270 1 + C T rs61753674 38884268 + 38884248 38884288 41 GTCATAATCTTGGAATGAATCACGATGATGGGAGAGATTGT GTCATAATCTTGGAATGAATCATGATGATGGGAGAGATTGT < 41bp 0.811803055957075 0.546558736892375 0.2513063 0.20368972 prediction 0.530488638129401 Functional Loss - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38884268 chr8:38884270 synonymous SNV . 0 23 hm5C_associated_SNPs_60995 1 0 1 0 2 ADAM9 chr8:38884196 3'AG 38884196 Downstream 75bp
chr8 38884270 38884270 1 + C T rs61753674 38884268 + 38884248 38884288 41 GTCATAATCTTGGAATGAATCACGATGATGGGAGAGATTGT GTCATAATCTTGGAATGAATCATGATGATGGGAGAGATTGT < 41bp 0.811803055957075 0.546558736892375 0.2513063 0.20368972 prediction 0.530488638129401 Functional Loss - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38884268 chr8:38884270 synonymous SNV . 0 23 hm5C_associated_SNPs_60995 1 0 1 0 2 ADAM9 chr8:38884329 5'GT 38884329 Upstream 60bp
chr12 109972414 109972414 1 + G T HNSC 109972411 + 109972391 109972431 41 TTCAGGACACCGGGGACACTCTGGGCAGCGTCCTCCGGGGC TTCAGGACACCGGGGACACTCTGTGCAGCGTCCTCCGGGGC < 41bp 0.898408401985251 0.633190837560003 0.9496087 0.50225955 prediction 0.530435128850497 Functional Loss - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109972411 chr12:109972414 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_60997 0 0 0 0 1 UBE3B chr12:109972396 3'AG 109972396 Downstream 19bp
chr14 75201644 75201644 1 + A T rs141595537 75201640 + 75201620 75201660 41 CCCCTCGATTCTAATTCTTACAAGACACAGTTCCTCTGCCT CCCCTCGATTCTAATTCTTACAAGTCACAGTTCCTCTGCCT < 41bp 0.80872934247099 0.543521586941636 0.24165282 0.13091418 prediction 0.530415511058707 Functional Loss - FCF1 ENSG00000119616 UTR3 Human protein_coding chr14:75201640 chr14:75201644 . . 0 25 hm5C_associated_SNPs_60999 0 0 1 1 1 FCF1 chr14:75201585 3'AG 75201585 Downstream 60bp
chr10 103587660 103587660 1 - C G BLCA 103587664 - 103587644 103587684 41 GAGGAGGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAGGT GAGGAGGCCCCAAGGGAACACGTGCAGAGCTTCTTCCAGGT < 41bp 0.765207437313487 0.487841377657201 0.58227074 0.3004677 prediction 0.530414874626974 Functional Loss - KCNIP2 ENSG00000120049 CDS Human protein_coding chr10:103587664 chr10:103587660 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_61000 0 0 1 0 2 KCNIP2 chr10:103587646 5'GT 103587646 Upstream 15bp
chr10 103587660 103587660 1 - C G BLCA 103587664 - 103587644 103587684 41 GAGGAGGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAGGT GAGGAGGCCCCAAGGGAACACGTGCAGAGCTTCTTCCAGGT < 41bp 0.765207437313487 0.487841377657201 0.58227074 0.3004677 prediction 0.530414874626974 Functional Loss - KCNIP2 ENSG00000120049 CDS Human protein_coding chr10:103587664 chr10:103587660 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_61000 0 0 1 0 2 KCNIP2 chr10:103587750 3'AG 103587750 Downstream 91bp
chr5 34929996 34929996 1 + G T UCEC 34929994 + 34929974 34930014 41 AGGAGCTCAAGAAGGCCTATCGGAAGCTGGCCCTGAAATGG AGGAGCTCAAGAAGGCCTATCGTAAGCTGGCCCTGAAATGG < 41bp 0.864466091671693 0.599260181780197 0.89140433 0.5071647 prediction 0.530411819782992 Functional Loss - DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34929994 chr5:34929996 synonymous SNV . 0 23 hm5C_associated_SNPs_61001 0 0 1 0 1 DNAJC21 chr5:34930021 5'GT 34930021 Upstream 26bp
chr20 37536802 37536802 1 + G T LUSC 37536800 + 37536780 37536820 41 TCCACCTACAACGGGGACATCAGGGAGACCAGGACAGACCA TCCACCTACAACGGGGACATCATGGAGACCAGGACAGACCA < 41bp 0.765166776356958 0.419008426831241 0.93134445 0.45508963 prediction 0.530333552713915 Functional Loss - PPP1R16B ENSG00000101445 CDS Human protein_coding chr20:37536800 chr20:37536802 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_61005 0 0 0 0 1 PPP1R16B chr20:37536836 5'GT 37536836 Upstream 35bp
chr20 37536803 37536803 1 + G T UCEC 37536800 + 37536780 37536820 41 TCCACCTACAACGGGGACATCAGGGAGACCAGGACAGACCA TCCACCTACAACGGGGACATCAGTGAGACCAGGACAGACCA < 41bp 0.765166776356958 0.375008198897101 0.93134445 0.40616566 prediction 0.530333552713915 Functional Loss - PPP1R16B ENSG00000101445 CDS Human protein_coding chr20:37536800 chr20:37536803 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_61006 0 0 0 0 1 PPP1R16B chr20:37536836 5'GT 37536836 Upstream 34bp
chr15 78457364 78457364 1 + C T LUSC 78457362 + 78457342 78457382 41 GTGCAGGATTGATCGGAGGTCTCGGTGTGACACCAAGTGGC GTGCAGGATTGATCGGAGGTCTTGGTGTGACACCAAGTGGC < 41bp 0.769242933679679 0.504086424914899 0.85297495 0.71448815 prediction 0.53031301752956 Functional Loss - IDH3A ENSG00000166411 CDS Human protein_coding chr15:78457362 chr15:78457364 synonymous SNV . 0 23 hm5C_associated_SNPs_61008 0 0 1 0 2 IDH3A chr15:78457334 3'AG 78457334 Downstream 31bp
chr15 78457364 78457364 1 + C T LUSC 78457362 + 78457342 78457382 41 GTGCAGGATTGATCGGAGGTCTCGGTGTGACACCAAGTGGC GTGCAGGATTGATCGGAGGTCTTGGTGTGACACCAAGTGGC < 41bp 0.769242933679679 0.504086424914899 0.85297495 0.71448815 prediction 0.53031301752956 Functional Loss - IDH3A ENSG00000166411 CDS Human protein_coding chr15:78457362 chr15:78457364 synonymous SNV . 0 23 hm5C_associated_SNPs_61008 0 0 1 0 2 IDH3A chr15:78457418 5'GT 78457418 Upstream 55bp
chr11 73962063 73962063 1 + G T UCEC 73962060 + 73962040 73962080 41 GTCCATGAGGATGCCCCTGACAAGGTGAGTCTGGTGCTCAG GTCCATGAGGATGCCCCTGACAATGTGAGTCTGGTGCTCAG < 41bp 0.765153096192478 0.38611583752594 0.8707285 0.14129713 prediction 0.530306192384956 Functional Loss - PPME1 ENSG00000214517 CDS Human protein_coding chr11:73962060 chr11:73962063 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_61009 0 0 1 0 2 PPME1 chr11:73961999 3'AG 73961999 Downstream 65bp
chr11 73962063 73962063 1 + G T UCEC 73962060 + 73962040 73962080 41 GTCCATGAGGATGCCCCTGACAAGGTGAGTCTGGTGCTCAG GTCCATGAGGATGCCCCTGACAATGTGAGTCTGGTGCTCAG < 41bp 0.765153096192478 0.38611583752594 0.8707285 0.14129713 prediction 0.530306192384956 Functional Loss - PPME1 ENSG00000214517 CDS Human protein_coding chr11:73962060 chr11:73962063 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_61009 0 0 1 0 2 PPME1 chr11:73962063 5'GT 73962063 Upstream 1bp
chr7 150269231 150269231 1 + G T UCEC 150269228 + 150269208 150269248 41 ATGTCCCAGGGCCTGGAAGGCAAGAGCCCAGAAATTCCCAA ATGTCCCAGGGCCTGGAAGGCAATAGCCCAGAAATTCCCAA < 41bp 0.901123909869858 0.635973392296805 0.29610366 0.2274344 prediction 0.530301035146106 Functional Loss - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150269228 chr7:150269231 stopgain 0.041 0 24 hm5C_associated_SNPs_61010 0 0 0 0 1 GIMAP4 chr7:150269217 3'AG 150269217 Downstream 15bp
chr5 161318041 161318041 1 + G T LUAD 161318039 + 161318019 161318059 41 GCTCAACAGAGAGTCTGTACCAGCAAGAACTGTCTTTGGTA GCTCAACAGAGAGTCTGTACCATCAAGAACTGTCTTTGGTA < 41bp 0.858533085980223 0.593389157603808 0.17126355 0.06788027 prediction 0.530287856752831 Functional Loss - GABRA1 ENSG00000022355 CDS Human protein_coding chr5:161318039 chr5:161318041 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_61011 0 0 0 0 1 GABRA1 chr5:161318056 5'GT 161318056 Upstream 16bp
chr17 40913878 40913878 1 + G T LUSC 40913875 + 40913855 40913895 41 TCCTGAATCCCCACGAGGCCCTGGCTCAGCCTCTTCCCACC TCCTGAATCCCCACGAGGCCCTGTCTCAGCCTCTTCCCACC < 41bp 0.765140226803178 0.373061144488786 0.058029234 0.017310292 prediction 0.530280453606357 Functional Loss - RAMP2 ENSG00000131477 CDS Human protein_coding chr17:40913875 chr17:40913878 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_61012 0 0 0 0 1 RAMP2 chr17:40913917 5'GT 40913917 Upstream 40bp
chr4 95539315 95539315 1 + C T UCEC 95539313 + 95539293 95539333 41 ATCCACTGGCGTCATCAAGTCACCAAGCTGGCAACGGCCAA ATCCACTGGCGTCATCAAGTCATCAAGCTGGCAACGGCCAA < 41bp 0.783646580978616 0.518532190349199 0.24362996 0.12307808 prediction 0.530228781258834 Functional Loss - PDLIM5 ENSG00000163110 CDS Human protein_coding chr4:95539313 chr4:95539315 nonsynonymous SNV 0.989 1 23 hm5C_associated_SNPs_61013 0 0 1 0 1 PDLIM5 chr4:95539342 5'GT 95539342 Upstream 28bp
chr12 9013783 9013783 1 + C T rs7959680 9013781 + 9013761 9013801 41 CTCAAGAATTCGGCCACCTCCACGACCAACCTCTACACACA CTCAAGAATTCGGCCACCTCCATGACCAACCTCTACACACA < 41bp 0.781918439445426 0.5168111673778 0.10436994 0.105636925 prediction 0.530214544135253 Functional Loss - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9013781 chr12:9013783 nonsynonymous SNV 0.047 1 23 hm5C_associated_SNPs_61016 1 0 0 0 1 A2ML1 chr12:9013731 3'AG 9013731 Downstream 53bp
chr1 43812204 43812204 1 + C T COAD 43812202 + 43812182 43812222 41 CTCTCGCTGCCACTTCAAGTCACGAAATGACAGCATTATTC CTCTCGCTGCCACTTCAAGTCATGAAATGACAGCATTATTC < 41bp 0.794147493161559 0.529041293525054 0.07681173 0.1132032 prediction 0.530212399273009 Functional Loss - MPL ENSG00000117400 CDS Human protein_coding chr1:43812202 chr1:43812204 stopgain 0.998 0 23 hm5C_associated_SNPs_61017 0 0 0 0 2 MPL chr1:43812116 3'AG 43812116 Downstream 89bp
chr1 43812204 43812204 1 + C T COAD 43812202 + 43812182 43812222 41 CTCTCGCTGCCACTTCAAGTCACGAAATGACAGCATTATTC CTCTCGCTGCCACTTCAAGTCATGAAATGACAGCATTATTC < 41bp 0.794147493161559 0.529041293525054 0.07681173 0.1132032 prediction 0.530212399273009 Functional Loss - MPL ENSG00000117400 CDS Human protein_coding chr1:43812202 chr1:43812204 stopgain 0.998 0 23 hm5C_associated_SNPs_61017 0 0 0 0 2 MPL chr1:43812300 5'GT 43812300 Upstream 97bp
chr2 136409574 136409574 1 + A C rs2305165 136409570 + 136409550 136409590 41 TCAGCCAGCCTGTGCTCCAGCAGCAGGGATATATTCAGCAG TCAGCCAGCCTGTGCTCCAGCAGCCGGGATATATTCAGCAG < 41bp 0.765098814283765 0.353186255055474 0.29731137 0.2187883 prediction 0.530197628567529 Functional Loss - R3HDM1 ENSG00000048991 CDS Human protein_coding chr2:136409570 chr2:136409574 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_61019 0 0 1 0 1 R3HDM1 chr2:136409602 5'GT 136409602 Upstream 29bp
chr10 120867528 120867528 1 + C T UCEC 120867526 + 120867506 120867546 41 TGGGTGTGGTGTTATCCTTCCACGACAGCCACATTAAGGAA TGGGTGTGGTGTTATCCTTCCATGACAGCCACATTAAGGAA < 41bp 0.804176399407737 0.539079654578664 0.12056705 0.10848573 prediction 0.530193489658145 Functional Loss - FAM45A ENSG00000119979 CDS Human protein_coding chr10:120867526 chr10:120867528 nonsynonymous SNV 0.992 2 23 hm5C_associated_SNPs_61021 0 0 0 0 3 FAM45A chr10:120867460 3'AG 120867460 Downstream 69bp
chr10 120867528 120867528 1 + C T UCEC 120867526 + 120867506 120867546 41 TGGGTGTGGTGTTATCCTTCCACGACAGCCACATTAAGGAA TGGGTGTGGTGTTATCCTTCCATGACAGCCACATTAAGGAA < 41bp 0.804176399407737 0.539079654578664 0.12056705 0.10848573 prediction 0.530193489658145 Functional Loss - FAM45A ENSG00000119979 CDS Human protein_coding chr10:120867526 chr10:120867528 nonsynonymous SNV 0.992 2 23 hm5C_associated_SNPs_61021 0 0 0 0 3 FAM45A chr10:120867480 3'AG 120867480 Downstream 49bp
chr10 120867528 120867528 1 + C T UCEC 120867526 + 120867506 120867546 41 TGGGTGTGGTGTTATCCTTCCACGACAGCCACATTAAGGAA TGGGTGTGGTGTTATCCTTCCATGACAGCCACATTAAGGAA < 41bp 0.804176399407737 0.539079654578664 0.12056705 0.10848573 prediction 0.530193489658145 Functional Loss - FAM45A ENSG00000119979 CDS Human protein_coding chr10:120867526 chr10:120867528 nonsynonymous SNV 0.992 2 23 hm5C_associated_SNPs_61021 0 0 0 0 3 FAM45A chr10:120867608 5'GT 120867608 Upstream 81bp
chr22 25625531 25625531 1 + G T LUAD 25625529 + 25625509 25625549 41 AGGAGAAGGTGTCATCTGTGCGGGTGCAGAGTGGCACGTAA AGGAGAAGGTGTCATCTGTGCGTGTGCAGAGTGGCACGTAA < 41bp 0.880544349905537 0.615462143996823 0.88208526 0.534747 prediction 0.530164411817427 Functional Loss - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25625529 chr22:25625531 synonymous SNV . 0 23 hm5C_associated_SNPs_61023 0 0 0 0 1 CRYBB2 chr22:25625545 5'GT 25625545 Upstream 15bp
chr1 231125922 231125922 1 + G T COAD 231125919 + 231125899 231125939 41 ACCTGAGGTGGTGGCAGCTTCAAGATTCCAACCAGAATACT ACCTGAGGTGGTGGCAGCTTCAATATTCCAACCAGAATACT < 41bp 0.898191206959001 0.633117893683339 0.34358758 0.17879668 prediction 0.530146626551325 Functional Loss - ARV1 ENSG00000173409 CDS Human protein_coding chr1:231125919 chr1:231125922 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_61024 0 0 1 0 2 ARV1 chr1:231125856 3'AG 231125856 Downstream 67bp
chr1 231125922 231125922 1 + G T COAD 231125919 + 231125899 231125939 41 ACCTGAGGTGGTGGCAGCTTCAAGATTCCAACCAGAATACT ACCTGAGGTGGTGGCAGCTTCAATATTCCAACCAGAATACT < 41bp 0.898191206959001 0.633117893683339 0.34358758 0.17879668 prediction 0.530146626551325 Functional Loss - ARV1 ENSG00000173409 CDS Human protein_coding chr1:231125919 chr1:231125922 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_61024 0 0 1 0 2 ARV1 chr1:231126009 5'GT 231126009 Upstream 88bp
chr4 647749 647749 1 + T C STAD 647748 + 647728 647768 41 TACCTCAACTGCGAGCGGTACTCCGTGGGCCTCCTGGACAT TACCTCAACTGCGAGCGGTACCCCGTGGGCCTCCTGGACAT < 41bp 0.768717349671108 0.503652714418042 0.20160809 0.079466105 prediction 0.530129270506132 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:647748 chr4:647749 nonsynonymous SNV 0.019 4 22 hm5C_associated_SNPs_61025 0 0 0 0 1 PDE6B chr4:647781 5'GT 647781 Upstream 33bp
chr7 88389380 88389380 1 + G T UCS 88389377 + 88389357 88389397 41 GTCTTCAGGGGACCCCTGTGCAAGAACGGATCTCCCTCTCC GTCTTCAGGGGACCCCTGTGCAATAACGGATCTCCCTCTCC < 41bp 0.765058732442475 0.427600816528929 0.41999426 0.14274254 prediction 0.530117464884951 Functional Loss - ZNF804B ENSG00000182348 CDS Human protein_coding chr7:88389377 chr7:88389380 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_61027 0 0 0 0 1 ZNF804B chr7:88389398 5'GT 88389398 Upstream 19bp
chr2 239342304 239342304 1 + C T HNSC 239342302 + 239342282 239342322 41 ACGTCGGGGACCTCCAGACCCTCAGGAGCCTATTGCAAGAG ACGTCGGGGACCTCCAGACCCTTAGGAGCCTATTGCAAGAG < 41bp 0.765045703136844 0.499969448142958 0.24385083 0.2904423 prediction 0.530091406273688 Functional Loss - ASB1 ENSG00000065802 CDS Human protein_coding chr2:239342302 chr2:239342304 synonymous SNV . 0 23 hm5C_associated_SNPs_61029 0 0 1 0 1 ASB1 chr2:239342336 5'GT 239342336 Upstream 33bp
chr11 2168848 2168848 1 - C A UCEC 2168850 - 2168830 2168870 41 CCAGGCGACCCCAGCGCTCCCAGAACTGAGGCTGGCAGCCA CCAGGCGACCCCAGCGCTCCCATAACTGAGGCTGGCAGCCA < 41bp 0.879364190611302 0.614340218782912 0.4629583 0.17434326 prediction 0.530047943656781 Functional Loss - INS-IGF2 ENSG00000129965 CDS Human antisense chr11:2168850 chr11:2168848 nonsynonymous SNV 0.418 5 23 hm5C_associated_SNPs_61032 0 0 0 0 1 IGF2-AS chr11:2168796 5'GT 2168796 Upstream 53bp
chr12 54396247 54396247 1 + C T CESC 54396245 + 54396225 54396265 41 GCCAACTGGATTCACGCCCGCTCCACGAGGAAGAAGCGCTG GCCAACTGGATTCACGCCCGCTTCACGAGGAAGAAGCGCTG < 41bp 0.779871225450488 0.5148496620833 0.27294803 0.048054636 prediction 0.530043126734376 Functional Loss - HOXC9 ENSG00000180806 CDS Human protein_coding chr12:54396245 chr12:54396247 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_61033 0 0 1 0 1 HOXC9 chr12:54396214 3'AG 54396214 Downstream 34bp
chr10 1151180 1151180 1 + C T UCEC 1151178 + 1151158 1151198 41 TTCAGGGACCCCTCCATCCACTCGGTGAATGTTTTCCAGGG TTCAGGGACCCCTCCATCCACTTGGTGAATGTTTTCCAGGG < 41bp 0.771066467201362 0.506055721952472 0.54700655 0.6125531 prediction 0.530021490497779 Functional Loss - WDR37 ENSG00000047056 CDS Human protein_coding chr10:1151178 chr10:1151180 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_61034 0 0 1 1 2 WDR37 chr10:1151181 5'GT 1151181 Upstream 2bp
chr10 1151180 1151180 1 + C T UCEC 1151178 + 1151158 1151198 41 TTCAGGGACCCCTCCATCCACTCGGTGAATGTTTTCCAGGG TTCAGGGACCCCTCCATCCACTTGGTGAATGTTTTCCAGGG < 41bp 0.771066467201362 0.506055721952472 0.54700655 0.6125531 prediction 0.530021490497779 Functional Loss - WDR37 ENSG00000047056 CDS Human protein_coding chr10:1151178 chr10:1151180 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_61034 0 0 1 1 2 WDR37 chr10:1151207 5'GT 1151207 Upstream 28bp
chrX 118604355 118604355 1 + G T CESC 118604352 + 118604332 118604372 41 CCAGGAATGCTTCCGGATCCCAAGAACACTCACATCGTCAT CCAGGAATGCTTCCGGATCCCAATAACACTCACATCGTCAT < 41bp 0.90410638458401 0.639100528310414 0.32038528 0.13566154 prediction 0.530011712547192 Functional Loss - SLC25A5 ENSG00000005022 CDS Human protein_coding chrX:118604352 chrX:118604355 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_61035 0 0 1 0 1 SLC25A5 chrX:118604336 3'AG 118604336 Downstream 20bp
chr1 200017918 200017918 1 + G T UCEC 200017916 + 200017896 200017936 41 TTCTCCATTGTCGAGTGGGCCAGGAGTAGTATCTTCTTCAG TTCTCCATTGTCGAGTGGGCCATGAGTAGTATCTTCTTCAG < 41bp 0.868182675389739 0.603179859928474 0.80337596 0.049378425 prediction 0.53000563092253 Functional Loss - NR5A2 ENSG00000116833 CDS Human protein_coding chr1:200017916 chr1:200017918 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_61036 0 0 1 0 1 NR5A2 chr1:200017946 5'GT 200017946 Upstream 29bp
chr7 99045873 99045873 1 + A T KIRC 99045869 + 99045849 99045889 41 AGTATGACATGACCAAGATGCCCGAGTGCTACTTCTACTCC AGTATGACATGACCAAGATGCCCGTGTGCTACTTCTACTCC < 41bp 0.765000299706331 0.43350588848084 0.35227674 0.21525642 prediction 0.530000599412663 Functional Loss - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99045869 chr7:99045873 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_61037 0 0 1 0 1 CPSF4 chr7:99045896 5'GT 99045896 Upstream 24bp
chr21 15399913 15399913 1 + G T UCEC 15399910 + 15399890 15399930 41 CTCCAGGACACCCCTGAAGCCGAGAAATGGTGAGTGTGGGG CTCCAGGACACCCCTGAAGCCGATAAATGGTGAGTGTGGGG < 41bp 0.764989572008762 0.400005040058102 0.28337544 0.119894505 prediction 0.529979144017524 Functional Loss - ANKRD20A11P;LIPI ENSG00000224905 ncRNA_exonic Human antisense chr21:15399910 chr21:15399913 . . 0 24 hm5C_associated_SNPs_61038 0 0 1 0 1 ANKRD20A11P;LIPI chr21:15399918 5'GT 15399918 Upstream 6bp
chr16 2199962 2199962 1 + G T SARC 2199959 + 2199939 2199979 41 TAGGTCATGCTGGTGGGGGACTCGGGTGTGGGGAAGACCTG TAGGTCATGCTGGTGGGGGACTCTGGTGTGGGGAAGACCTG < 41bp 0.76497597559634 0.382310612358214 0.9034312 0.75918794 prediction 0.529951951192679 Functional Loss - RAB26 ENSG00000167964 CDS Human protein_coding chr16:2199959 chr16:2199962 synonymous SNV . 0 24 hm5C_associated_SNPs_61039 0 0 0 0 2 RAB26 chr16:2199942 3'AG 2199942 Downstream 21bp
chr16 2199962 2199962 1 + G T SARC 2199959 + 2199939 2199979 41 TAGGTCATGCTGGTGGGGGACTCGGGTGTGGGGAAGACCTG TAGGTCATGCTGGTGGGGGACTCTGGTGTGGGGAAGACCTG < 41bp 0.76497597559634 0.382310612358214 0.9034312 0.75918794 prediction 0.529951951192679 Functional Loss - RAB26 ENSG00000167964 CDS Human protein_coding chr16:2199959 chr16:2199962 synonymous SNV . 0 24 hm5C_associated_SNPs_61039 0 0 0 0 2 RAB26 chr16:2200052 5'GT 2200052 Upstream 91bp
chr16 21964713 21964713 1 + G T rs201397873 21964711 + 21964691 21964731 41 CATCTTGCTTTCCTTTAATCCGGCAGTGACCGTGTGTCAGA CATCTTGCTTTCCTTTAATCCGTCAGTGACCGTGTGTCAGA < 41bp 0.843670059395996 0.578703578431188 0.30844074 0.07223442 prediction 0.529932961929614 Functional Loss - UQCRC2 ENSG00000140740 UTR5 Human protein_coding chr16:21964711 chr16:21964713 . . 0 23 hm5C_associated_SNPs_61040 1 0 1 0 1 UQCRC2 chr16:21964777 5'GT 21964777 Upstream 65bp
chr15 45409411 45409411 1 + C T SARC 45409409 + 45409389 45409429 41 TTCGGGGTCTTCGCCTTGGCCTCCATCTCTAGCGTGCCGCT TTCGGGGTCTTCGCCTTGGCCTTCATCTCTAGCGTGCCGCT < 41bp 0.782016083846549 0.517051118464023 0.92542183 0.18057579 prediction 0.529929930765053 Functional Loss - DUOXA2 ENSG00000140274 CDS Human protein_coding chr15:45409409 chr15:45409411 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_61041 0 0 0 0 1 DUOXA2 chr15:45409503 5'GT 45409503 Upstream 93bp
chr19 49378083 49378083 1 + G T LUAD 49378081 + 49378061 49378101 41 CTCCTAGGCTGCCCCTCCGACTGCAAAGGCGGCTCAAGCGC CTCCTAGGCTGCCCCTCCGACTTCAAAGGCGGCTCAAGCGC < 41bp 0.861035759526375 0.596077958693809 0.5299194 0.6663187 prediction 0.529915601665134 Functional Loss - PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49378081 chr19:49378083 synonymous SNV . 0 23 hm5C_associated_SNPs_61043 0 0 1 0 1 PPP1R15A chr19:49378155 5'GT 49378155 Upstream 73bp
chr13 111973270 111973270 1 + G T SARC 111973268 + 111973248 111973288 41 TGCTGGAAGTGAAGAACTCTCCGCGGCACCTCCTGAAGCAA TGCTGGAAGTGAAGAACTCTCCTCGGCACCTCCTGAAGCAA < 41bp 0.764952745518962 0.416518785419835 0.44732597 0.07164854 prediction 0.529905491037924 Functional Loss - TEX29 ENSG00000153495 CDS Human protein_coding chr13:111973268 chr13:111973270 synonymous SNV . 0 23 hm5C_associated_SNPs_61045 0 0 0 0 2 TEX29 chr13:111973204 3'AG 111973204 Downstream 67bp
chr13 111973270 111973270 1 + G T SARC 111973268 + 111973248 111973288 41 TGCTGGAAGTGAAGAACTCTCCGCGGCACCTCCTGAAGCAA TGCTGGAAGTGAAGAACTCTCCTCGGCACCTCCTGAAGCAA < 41bp 0.764952745518962 0.416518785419835 0.44732597 0.07164854 prediction 0.529905491037924 Functional Loss - TEX29 ENSG00000153495 CDS Human protein_coding chr13:111973268 chr13:111973270 synonymous SNV . 0 23 hm5C_associated_SNPs_61045 0 0 0 0 2 TEX29 chr13:111973295 5'GT 111973295 Upstream 26bp
chr19 17291808 17291808 1 + C T HNSC 17291806 + 17291786 17291826 41 GCGAGGACCCCCGTAGCCTTCTCCAGTCCCTCAGTCGGCTC GCGAGGACCCCCGTAGCCTTCTTCAGTCCCTCAGTCGGCTC < 41bp 0.803655865101225 0.538717375483316 0.9314395 0.14762974 prediction 0.52987697923582 Functional Loss - MYO9B ENSG00000099331 CDS Human protein_coding chr19:17291806 chr19:17291808 synonymous SNV . 0 23 hm5C_associated_SNPs_61048 0 0 1 0 2 MYO9B chr19:17291736 3'AG 17291736 Downstream 73bp
chr19 17291808 17291808 1 + C T HNSC 17291806 + 17291786 17291826 41 GCGAGGACCCCCGTAGCCTTCTCCAGTCCCTCAGTCGGCTC GCGAGGACCCCCGTAGCCTTCTTCAGTCCCTCAGTCGGCTC < 41bp 0.803655865101225 0.538717375483316 0.9314395 0.14762974 prediction 0.52987697923582 Functional Loss - MYO9B ENSG00000099331 CDS Human protein_coding chr19:17291806 chr19:17291808 synonymous SNV . 0 23 hm5C_associated_SNPs_61048 0 0 1 0 2 MYO9B chr19:17291849 5'GT 17291849 Upstream 42bp
chr9 119106912 119106912 1 + C T rs142033727 119106910 + 119106890 119106930 41 GCTCCAGCAGCGACCGCTACCACGGTGCCCAGTGTACTGTG GCTCCAGCAGCGACCGCTACCATGGTGCCCAGTGTACTGTG < 41bp 0.771251814011244 0.506314378218361 0.5145161 0.5443093 prediction 0.529874871585766 Functional Loss - PAPPA ENSG00000182752 CDS Human protein_coding chr9:119106910 chr9:119106912 synonymous SNV . 0 23 hm5C_associated_SNPs_61049 0 0 0 0 2 PAPPA chr9:119106822 3'AG 119106822 Downstream 91bp
chr9 119106912 119106912 1 + C T rs142033727 119106910 + 119106890 119106930 41 GCTCCAGCAGCGACCGCTACCACGGTGCCCAGTGTACTGTG GCTCCAGCAGCGACCGCTACCATGGTGCCCAGTGTACTGTG < 41bp 0.771251814011244 0.506314378218361 0.5145161 0.5443093 prediction 0.529874871585766 Functional Loss - PAPPA ENSG00000182752 CDS Human protein_coding chr9:119106910 chr9:119106912 synonymous SNV . 0 23 hm5C_associated_SNPs_61049 0 0 0 0 2 PAPPA chr9:119106990 5'GT 119106990 Upstream 79bp
chr11 65305782 65305782 1 + C T UCEC 65305780 + 65305760 65305800 41 GTGAGGACAACTGGGAGGGCCTCGAGACTGACAGTCGTAAG GTGAGGACAACTGGGAGGGCCTTGAGACTGACAGTCGTAAG < 41bp 0.764934948991441 0.494566927569732 0.7488265 0.26770437 prediction 0.529869897982882 Functional Loss - SCYL1 ENSG00000142186 CDS Human protein_coding chr11:65305780 chr11:65305782 nonsynonymous SNV 0.375 0 23 hm5C_associated_SNPs_61050 0 0 1 0 2 SCYL1 chr11:65305741 3'AG 65305741 Downstream 42bp
chr11 65305782 65305782 1 + C T UCEC 65305780 + 65305760 65305800 41 GTGAGGACAACTGGGAGGGCCTCGAGACTGACAGTCGTAAG GTGAGGACAACTGGGAGGGCCTTGAGACTGACAGTCGTAAG < 41bp 0.764934948991441 0.494566927569732 0.7488265 0.26770437 prediction 0.529869897982882 Functional Loss - SCYL1 ENSG00000142186 CDS Human protein_coding chr11:65305780 chr11:65305782 nonsynonymous SNV 0.375 0 23 hm5C_associated_SNPs_61050 0 0 1 0 2 SCYL1 chr11:65305795 5'GT 65305795 Upstream 14bp
chr11 43511894 43511894 1 + C T COAD 43511892 + 43511872 43511912 41 CCGCCAGGCTCTGCACTATGCGCCACACCAGATGAAGGTGA CCGCCAGGCTCTGCACTATGCGTCACACCAGATGAAGGTGA < 41bp 0.764925637397725 0.48328143404926 0.14636138 0.20854262 prediction 0.529851274795449 Functional Loss - TTC17 ENSG00000052841 CDS Human protein_coding chr11:43511892 chr11:43511894 nonsynonymous SNV 0.820 3 23 hm5C_associated_SNPs_61051 0 0 1 0 1 TTC17 chr11:43511908 5'GT 43511908 Upstream 15bp
chr16 81398616 81398616 1 + C T UCEC 81398614 + 81398594 81398634 41 GCTATGAAAAAGAAAATCTACGCCATGGGTGGAGGCTCCTA GCTATGAAAAAGAAAATCTACGTCATGGGTGGAGGCTCCTA < 41bp 0.820565167842313 0.555640358644785 0.090577036 0.06191331 prediction 0.529849618395056 Functional Loss - GAN ENSG00000261609 CDS Human protein_coding chr16:81398614 chr16:81398616 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_61052 0 0 1 0 2 GAN chr16:81398579 3'AG 81398579 Downstream 38bp
chr16 81398616 81398616 1 + C T UCEC 81398614 + 81398594 81398634 41 GCTATGAAAAAGAAAATCTACGCCATGGGTGGAGGCTCCTA GCTATGAAAAAGAAAATCTACGTCATGGGTGGAGGCTCCTA < 41bp 0.820565167842313 0.555640358644785 0.090577036 0.06191331 prediction 0.529849618395056 Functional Loss - GAN ENSG00000261609 CDS Human protein_coding chr16:81398614 chr16:81398616 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_61052 0 0 1 0 2 GAN chr16:81398715 5'GT 81398715 Upstream 100bp
chr22 42191844 42191844 1 + G T rs75338000 42191841 + 42191821 42191861 41 CCTCAGGCCAGCCACCCCTGCAGGACATGCTGTATCCTTTC CCTCAGGCCAGCCACCCCTGCAGTACATGCTGTATCCTTTC < 41bp 0.764919345918424 0.392570194838133 0.5060879 0.16953957 prediction 0.529838691836847 Functional Loss - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42191841 chr22:42191844 nonsynonymous SNV 0.936 4 24 hm5C_associated_SNPs_61053 0 0 0 0 1 MEI1 chr22:42191851 5'GT 42191851 Upstream 8bp
chr18 59217418 59217418 1 + G C LUSC 59217417 + 59217397 59217437 41 TGCTCCCAGTCAGTTTGAGCCGGGGCGCCCTCATTGCCATC TGCTCCCAGTCAGTTTGAGCCCGGGCGCCCTCATTGCCATC < 41bp 0.844692907877175 0.579787402663142 0.81706077 0.33582288 prediction 0.529811010428066 Functional Loss - CDH20 ENSG00000101542 CDS Human protein_coding chr18:59217417 chr18:59217418 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_61056 0 0 0 0 1 CDH20 chr18:59217462 5'GT 59217462 Upstream 45bp
chr14 72152321 72152321 1 + C T SKCM 72152319 + 72152299 72152339 41 GCCAACATCCCTCGAAGCATCTCCAGTGACGGGCGCCCACT GCCAACATCCCTCGAAGCATCTTCAGTGACGGGCGCCCACT < 41bp 0.764886657751716 0.475004342804605 0.951257 0.30569762 prediction 0.529773315503431 Functional Loss - SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72152319 chr14:72152321 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_61060 0 0 0 0 1 SIPA1L1 chr14:72152348 5'GT 72152348 Upstream 28bp
chr19 5131990 5131990 1 + G C rs73529623 5131986 + 5131966 5132006 41 GCCCACCCGGTCCCCACTGTCGGTGGTGAAGCAGGAGGCCT GCCCACCCGGTCCCCACTGTCGGTCGTGAAGCAGGAGGCCT < 41bp 0.783949936566859 0.519065662228537 0.90114033 0.7425764 prediction 0.529768548676645 Functional Loss - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5131986 chr19:5131990 synonymous SNV . 0 25 hm5C_associated_SNPs_61061 0 0 1 0 1 KDM4B chr19:5131898 3'AG 5131898 Downstream 93bp
chr19 42901331 42901331 1 + G C rs539812598 42901327 + 42901307 42901347 41 CGGAATCCTGGTCCACTCCGCAGAGGCCCGAGCGGGCTCGC CGGAATCCTGGTCCACTCCGCAGACGCCCGAGCGGGCTCGC < 41bp 0.764883647367143 0.491195879090057 0.8969703 0.8200275 prediction 0.529767294734286 Functional Loss - LIPE-AS1;LOC101930071 ENSG00000213904 ncRNA_exonic Human antisense chr19:42901327 chr19:42901331 . . 0 25 hm5C_associated_SNPs_61062 0 0 0 0 1 LIPE-AS1;LOC101930071 chr19:42901376 5'GT 42901376 Upstream 46bp
chr3 183882952 183882952 1 + C T LUSC 183882950 + 183882930 183882970 41 CCTCACGCCTGATGAGAAGACACAAGCGGCGGCGGCGGAAG CCTCACGCCTGATGAGAAGACATAAGCGGCGGCGGCGGAAG < 41bp 0.781140353849817 0.51625820388775 0.18761837 0.18989456 prediction 0.529764299924133 Functional Loss - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183882950 chr3:183882952 synonymous SNV . 0 23 hm5C_associated_SNPs_61064 0 0 1 0 2 DVL3 chr3:183882901 3'AG 183882901 Downstream 52bp
chr3 183882952 183882952 1 + C T LUSC 183882950 + 183882930 183882970 41 CCTCACGCCTGATGAGAAGACACAAGCGGCGGCGGCGGAAG CCTCACGCCTGATGAGAAGACATAAGCGGCGGCGGCGGAAG < 41bp 0.781140353849817 0.51625820388775 0.18761837 0.18989456 prediction 0.529764299924133 Functional Loss - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183882950 chr3:183882952 synonymous SNV . 0 23 hm5C_associated_SNPs_61064 0 0 1 0 2 DVL3 chr3:183882994 5'GT 183882994 Upstream 43bp
chr13 34403987 34403987 1 + G T UCEC 34403985 + 34403965 34404005 41 TGACTCAGTGGTATTATTGACAGAAGTTGACAAACTCACCA TGACTCAGTGGTATTATTGACATAAGTTGACAAACTCACCA < 41bp 0.764873758508547 0.442605019903632 0.4702912 0.14762557 prediction 0.529747517017093 Functional Loss - RFC3 ENSG00000133119 CDS Human protein_coding chr13:34403985 chr13:34403987 stopgain 0.999 1 23 hm5C_associated_SNPs_61067 0 0 1 0 1 RFC3 chr13:34403973 3'AG 34403973 Downstream 15bp
chr10 35626047 35626047 1 + G T SARC 35626045 + 35626025 35626065 41 TCCGGAGGAATGCCCACTCCCGGCTGGAGTCCTACCGGCCA TCCGGAGGAATGCCCACTCCCGTCTGGAGTCCTACCGGCCA < 41bp 0.764830788945661 0.47033651414185 0.89873827 0.41268802 prediction 0.529661577891323 Functional Loss - CCNY ENSG00000108100 CDS Human protein_coding chr10:35626045 chr10:35626047 synonymous SNV . 0 23 hm5C_associated_SNPs_61069 0 0 1 0 1 CCNY chr10:35626135 5'GT 35626135 Upstream 89bp
chr7 39247173 39247173 1 + A C rs544859176 39247169 + 39247149 39247189 41 CAACATCCAAGGGCTGGTGGCAGCAGCTGCAGCCGGAGGCA CAACATCCAAGGGCTGGTGGCAGCCGCTGCAGCCGGAGGCA < 41bp 0.764825416579035 0.373037237787638 0.5974705 0.40190962 prediction 0.52965083315807 Functional Loss - POU6F2 ENSG00000106536 CDS Human protein_coding chr7:39247169 chr7:39247173 synonymous SNV . 0 25 hm5C_associated_SNPs_61070 0 0 0 0 1 POU6F2 chr7:39247219 5'GT 39247219 Upstream 47bp
chr19 7591725 7591725 1 + G T LUAD 7591723 + 7591703 7591743 41 TGACCCTTGGACCAATGGCTCAGGGCTTGCTCTCTGCCAGC TGACCCTTGGACCAATGGCTCATGGCTTGCTCTCTGCCAGC < 41bp 0.886823616846296 0.622003458524919 0.9422531 0.717356 prediction 0.529640316642755 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7591723 chr19:7591725 nonsynonymous SNV 0.026 2 23 hm5C_associated_SNPs_61071 0 0 1 0 2 MCOLN1 chr19:7591647 3'AG 7591647 Downstream 79bp
chr19 7591725 7591725 1 + G T LUAD 7591723 + 7591703 7591743 41 TGACCCTTGGACCAATGGCTCAGGGCTTGCTCTCTGCCAGC TGACCCTTGGACCAATGGCTCATGGCTTGCTCTCTGCCAGC < 41bp 0.886823616846296 0.622003458524919 0.9422531 0.717356 prediction 0.529640316642755 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7591723 chr19:7591725 nonsynonymous SNV 0.026 2 23 hm5C_associated_SNPs_61071 0 0 1 0 2 MCOLN1 chr19:7591812 5'GT 7591812 Upstream 88bp
chr9 34250662 34250662 1 + G T LGG 34250659 + 34250639 34250679 41 CTTGTTTCTTTTCTTAGATTCTCGACTATCTCTTTGCACAT CTTGTTTCTTTTCTTAGATTCTCTACTATCTCTTTGCACAT < 41bp 0.764817375304023 0.389760199468788 0.55634844 0.90544784 prediction 0.529634750608047 Functional Loss - UBAP1 ENSG00000165006 CDS Human protein_coding chr9:34250659 chr9:34250662 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_61072 0 0 1 0 2 UBAP1 chr9:34250656 3'AG 34250656 Downstream 7bp
chr9 34250662 34250662 1 + G T LGG 34250659 + 34250639 34250679 41 CTTGTTTCTTTTCTTAGATTCTCGACTATCTCTTTGCACAT CTTGTTTCTTTTCTTAGATTCTCTACTATCTCTTTGCACAT < 41bp 0.764817375304023 0.389760199468788 0.55634844 0.90544784 prediction 0.529634750608047 Functional Loss - UBAP1 ENSG00000165006 CDS Human protein_coding chr9:34250659 chr9:34250662 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_61072 0 0 1 0 2 UBAP1 chr9:34250757 5'GT 34250757 Upstream 96bp
chr19 13873196 13873196 1 + C T SKCM 13873194 + 13873174 13873214 41 GCCTGACCATCCCGCTGGTGCCCGAGACGGAAGATGACCGC GCCTGACCATCCCGCTGGTGCCTGAGACGGAAGATGACCGC < 41bp 0.764816934663675 0.496134410368635 0.23246819 0.41808227 prediction 0.52963386932735 Functional Loss - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13873194 chr19:13873196 synonymous SNV . 0 23 hm5C_associated_SNPs_61073 0 0 1 0 2 CCDC130 chr19:13873113 3'AG 13873113 Downstream 84bp
chr19 13873196 13873196 1 + C T SKCM 13873194 + 13873174 13873214 41 GCCTGACCATCCCGCTGGTGCCCGAGACGGAAGATGACCGC GCCTGACCATCCCGCTGGTGCCTGAGACGGAAGATGACCGC < 41bp 0.764816934663675 0.496134410368635 0.23246819 0.41808227 prediction 0.52963386932735 Functional Loss - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13873194 chr19:13873196 synonymous SNV . 0 23 hm5C_associated_SNPs_61073 0 0 1 0 2 CCDC130 chr19:13873251 5'GT 13873251 Upstream 56bp
chr11 61897307 61897307 1 + G T UCEC 61897305 + 61897285 61897325 41 CTGAGCTCCCGACGCCTCCGCAGCAAGGACAGTGTAGAGAA CTGAGCTCCCGACGCCTCCGCATCAAGGACAGTGTAGAGAA < 41bp 0.764815855008411 0.420334516734269 0.1590673 0.10649645 prediction 0.529631710016822 Functional Loss - INCENP ENSG00000149503 CDS Human protein_coding chr11:61897305 chr11:61897307 nonsynonymous SNV 0.919 3 23 hm5C_associated_SNPs_61074 0 0 1 0 1 INCENP chr11:61897254 3'AG 61897254 Downstream 54bp
chr19 55857972 55857972 1 + G C BLCA 55857968 + 55857948 55857988 41 AGACCAAGCGGCGGCTGCAGCAAGGCCTGGACAGTGGCAGC AGACCAAGCGGCGGCTGCAGCAAGCCCTGGACAGTGGCAGC < 41bp 0.764814197934328 0.485447495338729 0.8941314 0.8336001 prediction 0.529628395868655 Functional Loss - KMT5C ENSG00000133247 CDS Human protein_coding chr19:55857968 chr19:55857972 nonsynonymous SNV 0.824 1 25 hm5C_associated_SNPs_61075 0 0 1 0 1 KMT5C chr19:55858055 5'GT 55858055 Upstream 84bp
chr3 47361241 47361241 1 + G T STAD 47361239 + 47361219 47361259 41 ATGACATGATGGAGTGCAAGCAGGATGAGATTGTAATGCAA ATGACATGATGGAGTGCAAGCATGATGAGATTGTAATGCAA < 41bp 0.764801338829602 0.428974671357733 0.7075602 0.09421739 prediction 0.529602677659205 Functional Loss - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47361239 chr3:47361241 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_61077 0 0 1 0 2 KLHL18 chr3:47361143 3'AG 47361143 Downstream 99bp
chr3 47361241 47361241 1 + G T STAD 47361239 + 47361219 47361259 41 ATGACATGATGGAGTGCAAGCAGGATGAGATTGTAATGCAA ATGACATGATGGAGTGCAAGCATGATGAGATTGTAATGCAA < 41bp 0.764801338829602 0.428974671357733 0.7075602 0.09421739 prediction 0.529602677659205 Functional Loss - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47361239 chr3:47361241 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_61077 0 0 1 0 2 KLHL18 chr3:47361273 5'GT 47361273 Upstream 33bp
chr1 95311020 95311020 1 + G T LUAD 95311018 + 95310998 95311038 41 GCTGCTGAGCCTGGGAACTGCAGGTAAGGGACAGTGGGTGT GCTGCTGAGCCTGGGAACTGCATGTAAGGGACAGTGGGTGT < 41bp 0.764795126688144 0.436889213923214 0.7029186 0.20595726 prediction 0.529590253376287 Functional Loss - SLC44A3 ENSG00000143036 CDS Human protein_coding chr1:95311018 chr1:95311020 stopgain 0.985 1 23 hm5C_associated_SNPs_61078 0 0 0 1 1 SLC44A3 chr1:95311020 5'GT 95311020 Upstream 1bp
chr6 33373371 33373371 1 + C T SKCM 33373369 + 33373349 33373389 41 GGGAGTGAGGAGCTCACTGTCACCAATGCTCGATATGTCCC GGGAGTGAGGAGCTCACTGTCATCAATGCTCGATATGTCCC < 41bp 0.793733562653933 0.528955715101786 0.2328685 0.15329939 prediction 0.529555695104294 Functional Loss - KIFC1 ENSG00000237649 CDS Human protein_coding chr6:33373369 chr6:33373371 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_61079 0 0 1 0 1 KIFC1 chr6:33373408 5'GT 33373408 Upstream 38bp
chr6 26385328 26385328 1 + G T COAD 26385325 + 26385305 26385345 41 TTACGCTGCCATCTGTCACCCGAGAAAAATGCTGAGGACAT TTACGCTGCCATCTGTCACCCGATAAAAATGCTGAGGACAT < 41bp 0.76477469686642 0.383045271669404 0.8141318 0.87628275 prediction 0.529549393732839 Functional Loss - BTN2A2 ENSG00000124508 CDS Human protein_coding chr6:26385325 chr6:26385328 nonsynonymous SNV 0.940 1 24 hm5C_associated_SNPs_61081 0 0 0 0 1 BTN2A2 chr6:26385243 3'AG 26385243 Downstream 86bp
chrX 118374394 118374394 1 + G T LUSC 118374391 + 118374371 118374411 41 CTGACCTCACTGCTGCCCAGCAGGAGACTCTGAGTGACTGG CTGACCTCACTGCTGCCCAGCAGTAGACTCTGAGTGACTGG < 41bp 0.764734728669059 0.378195976366181 0.7764339 0.2903043 prediction 0.529469457338118 Functional Loss - PGRMC1 ENSG00000101856 CDS Human protein_coding chrX:118374391 chrX:118374394 stopgain 0.947 1 24 hm5C_associated_SNPs_61084 0 0 1 0 1 PGRMC1 chrX:118374427 5'GT 118374427 Upstream 34bp
chr9 35607349 35607349 1 + G C LUAD 35607348 + 35607328 35607368 41 GTCTAGTCCGACGGGAAGATCGAGGCTTCACCGCTGTCGTG GTCTAGTCCGACGGGAAGATCCAGGCTTCACCGCTGTCGTG < 41bp 0.764727562765572 0.453632507367145 0.93633157 0.92210305 prediction 0.529455125531143 Functional Loss - TESK1 ENSG00000107140 CDS Human protein_coding chr9:35607348 chr9:35607349 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_61086 0 0 1 0 2 TESK1 chr9:35607324 3'AG 35607324 Downstream 26bp
chr9 35607349 35607349 1 + G C LUAD 35607348 + 35607328 35607368 41 GTCTAGTCCGACGGGAAGATCGAGGCTTCACCGCTGTCGTG GTCTAGTCCGACGGGAAGATCCAGGCTTCACCGCTGTCGTG < 41bp 0.764727562765572 0.453632507367145 0.93633157 0.92210305 prediction 0.529455125531143 Functional Loss - TESK1 ENSG00000107140 CDS Human protein_coding chr9:35607348 chr9:35607349 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_61086 0 0 1 0 2 TESK1 chr9:35607406 5'GT 35607406 Upstream 58bp
chr6 46111108 46111108 1 + A T SARC 46111104 + 46111084 46111124 41 CACAAAGGCTACAAGCATAGCACAATTAACATTGTGGATAT CACAAAGGCTACAAGCATAGCACATTTAACATTGTGGATAT < 41bp 0.764717919956892 0.45909246339931 0.020688564 0.036000162 prediction 0.529435839913784 Functional Loss - ENPP4 ENSG00000001561 CDS Human protein_coding chr6:46111104 chr6:46111108 nonsynonymous SNV 0.993 1 25 hm5C_associated_SNPs_61087 0 0 1 0 1 ENPP4 chr6:46111013 3'AG 46111013 Downstream 96bp
chr19 47706943 47706943 1 + G T LUAD 47706940 + 47706920 47706960 41 TCTTTTAGGTACTGCTTCTCCGAGATGGCCCCAGTGTGTGC TCTTTTAGGTACTGCTTCTCCGATATGGCCCCAGTGTGTGC < 41bp 0.903825039286958 0.639109986966451 0.64002526 0.047578424 prediction 0.529430104641014 Functional Loss - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47706940 chr19:47706943 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_61089 0 0 1 0 2 SAE1 chr19:47706928 3'AG 47706928 Downstream 16bp
chr19 47706943 47706943 1 + G T LUAD 47706940 + 47706920 47706960 41 TCTTTTAGGTACTGCTTCTCCGAGATGGCCCCAGTGTGTGC TCTTTTAGGTACTGCTTCTCCGATATGGCCCCAGTGTGTGC < 41bp 0.903825039286958 0.639109986966451 0.64002526 0.047578424 prediction 0.529430104641014 Functional Loss - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47706940 chr19:47706943 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_61089 0 0 1 0 2 SAE1 chr19:47706997 5'GT 47706997 Upstream 55bp
chr1 149376724 149376724 1 + G T OV 149376721 + 149376701 149376741 41 CATCTGTGACATCCCCACTCCTGGGGGGAATCTGGTCACCC CATCTGTGACATCCCCACTCCTGTGGGGAATCTGGTCACCC < 41bp 0.764712184044793 0.401087749446731 0.40496743 0.06596476 prediction 0.529424368089587 Functional Loss - FCGR1CP ENSG00000253193 ncRNA_exonic Human other chr1:149376721 chr1:149376724 . . 0 24 hm5C_associated_SNPs_61090 0 0 0 0 1 FCGR1CP chr1:149376674 3'AG 149376674 Downstream 51bp
chr22 41609982 41609982 1 + G T UCEC 41609979 + 41609959 41609999 41 TTCTGCAGCGTCTCCTGCTCCAGGAGCTACTCCTCCAACTC TTCTGCAGCGTCTCCTGCTCCAGTAGCTACTCCTCCAACTC < 41bp 0.90912931565573 0.644429631585649 0.71062213 0.03336537 prediction 0.529399368140163 Functional Loss - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41609979 chr22:41609982 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_61094 0 0 1 0 2 L3MBTL2 chr22:41609897 3'AG 41609897 Downstream 86bp
chr22 41609982 41609982 1 + G T UCEC 41609979 + 41609959 41609999 41 TTCTGCAGCGTCTCCTGCTCCAGGAGCTACTCCTCCAACTC TTCTGCAGCGTCTCCTGCTCCAGTAGCTACTCCTCCAACTC < 41bp 0.90912931565573 0.644429631585649 0.71062213 0.03336537 prediction 0.529399368140163 Functional Loss - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41609979 chr22:41609982 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_61094 0 0 1 0 2 L3MBTL2 chr22:41610030 5'GT 41610030 Upstream 49bp
chr17 32583280 32583280 1 + C T SKCM 32583278 + 32583258 32583298 41 GTCACCTGCTGTTATAACTTCACCAATAGGAAGATCTCAGT GTCACCTGCTGTTATAACTTCATCAATAGGAAGATCTCAGT < 41bp 0.764694541528381 0.489545946583616 0.035272002 0.019984633 prediction 0.529389083056762 Functional Loss - CCL2 ENSG00000108691 CDS Human protein_coding chr17:32583278 chr17:32583280 nonsynonymous SNV 0.041 0 23 hm5C_associated_SNPs_61095 0 0 1 0 2 CCL2 chr17:32583241 3'AG 32583241 Downstream 40bp
chr17 32583280 32583280 1 + C T SKCM 32583278 + 32583258 32583298 41 GTCACCTGCTGTTATAACTTCACCAATAGGAAGATCTCAGT GTCACCTGCTGTTATAACTTCATCAATAGGAAGATCTCAGT < 41bp 0.764694541528381 0.489545946583616 0.035272002 0.019984633 prediction 0.529389083056762 Functional Loss - CCL2 ENSG00000108691 CDS Human protein_coding chr17:32583278 chr17:32583280 nonsynonymous SNV 0.041 0 23 hm5C_associated_SNPs_61095 0 0 1 0 2 CCL2 chr17:32583358 5'GT 32583358 Upstream 79bp
chr7 142564291 142564291 1 + G T LUAD 142564288 + 142564268 142564308 41 AGCCGGGCATCCAACAGCATCACGGTGTCCTGGCCGCAGCC AGCCGGGCATCCAACAGCATCACTGTGTCCTGGCCGCAGCC < 41bp 0.764691435104242 0.360993376367514 0.8758793 0.27382308 prediction 0.529382870208484 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142564288 chr7:142564291 synonymous SNV . 0 24 hm5C_associated_SNPs_61096 0 0 0 0 2 EPHB6 chr7:142564236 3'AG 142564236 Downstream 56bp
chr7 142564291 142564291 1 + G T LUAD 142564288 + 142564268 142564308 41 AGCCGGGCATCCAACAGCATCACGGTGTCCTGGCCGCAGCC AGCCGGGCATCCAACAGCATCACTGTGTCCTGGCCGCAGCC < 41bp 0.764691435104242 0.360993376367514 0.8758793 0.27382308 prediction 0.529382870208484 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142564288 chr7:142564291 synonymous SNV . 0 24 hm5C_associated_SNPs_61096 0 0 0 0 2 EPHB6 chr7:142564360 5'GT 142564360 Upstream 70bp
chr7 141831876 141831876 1 + G T UCEC 141831874 + 141831854 141831894 41 AAAATAATGAGGACAAGCAACAGAAGAGTCTTGTGAGCTTT AAAATAATGAGGACAAGCAACATAAGAGTCTTGTGAGCTTT < 41bp 0.764687631832332 0.431437223231235 0.5442465 0.23052117 prediction 0.529375263664664 Functional Loss - MGAM2 ENSG00000257743 CDS Human protein_coding chr7:141831874 chr7:141831876 nonsynonymous SNV 0.837 2 23 hm5C_associated_SNPs_61097 0 0 0 0 1 MGAM2 chr7:141831885 5'GT 141831885 Upstream 10bp
chr7 128441556 128441556 1 + G C rs3816886 128441552 + 128441532 128441572 41 TTTAGGTCTCTCAGATTACTCTGGGTTACAAGGTATGAGAG TTTAGGTCTCTCAGATTACTCTGGCTTACAAGGTATGAGAG < 41bp 0.815992860670011 0.551322589481313 0.90976524 0.9021318 prediction 0.529340542377395 Functional Loss - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128441552 chr7:128441556 synonymous SNV . 0 25 hm5C_associated_SNPs_61101 0 0 0 0 1 CCDC136 chr7:128441563 5'GT 128441563 Upstream 8bp
chr7 139706914 139706914 1 + C T UCEC 139706912 + 139706892 139706932 41 TGGCCCCTGAGTTCTGCAGCCTCGAGGAAGGCCTGCCCTAT TGGCCCCTGAGTTCTGCAGCCTTGAGGAAGGCCTGCCCTAT < 41bp 0.814794565057841 0.550124497738495 0.6139324 0.42318743 prediction 0.529340134638693 Functional Loss - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139706912 chr7:139706914 synonymous SNV . 0 23 hm5C_associated_SNPs_61102 0 0 0 0 2 TBXAS1 chr7:139706891 3'AG 139706891 Downstream 24bp
chr7 139706914 139706914 1 + C T UCEC 139706912 + 139706892 139706932 41 TGGCCCCTGAGTTCTGCAGCCTCGAGGAAGGCCTGCCCTAT TGGCCCCTGAGTTCTGCAGCCTTGAGGAAGGCCTGCCCTAT < 41bp 0.814794565057841 0.550124497738495 0.6139324 0.42318743 prediction 0.529340134638693 Functional Loss - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139706912 chr7:139706914 synonymous SNV . 0 23 hm5C_associated_SNPs_61102 0 0 0 0 2 TBXAS1 chr7:139706982 5'GT 139706982 Upstream 69bp
chr1 214488167 214488167 1 + G T LUAD 214488164 + 214488144 214488184 41 ATGGTTGTTTTTGGGGAAAACTGGAATCCCTCGGAGACTGT ATGGTTGTTTTTGGGGAAAACTGTAATCCCTCGGAGACTGT < 41bp 0.89292220618776 0.628256722760544 0.89185834 0.3256753 prediction 0.529330966854433 Functional Loss - SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214488164 chr1:214488167 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_61104 0 0 1 1 2 SMYD2 chr1:214488105 3'AG 214488105 Downstream 63bp
chr1 214488167 214488167 1 + G T LUAD 214488164 + 214488144 214488184 41 ATGGTTGTTTTTGGGGAAAACTGGAATCCCTCGGAGACTGT ATGGTTGTTTTTGGGGAAAACTGTAATCCCTCGGAGACTGT < 41bp 0.89292220618776 0.628256722760544 0.89185834 0.3256753 prediction 0.529330966854433 Functional Loss - SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214488164 chr1:214488167 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_61104 0 0 1 1 2 SMYD2 chr1:214488215 5'GT 214488215 Upstream 49bp
chr6 25665221 25665221 1 + C T STAD 25665219 + 25665199 25665239 41 AAAACTTTCTTCTGCTCTTTCGCCGGGAAAACCCACTGGAC AAAACTTTCTTCTGCTCTTTCGTCGGGAAAACCCACTGGAC < 41bp 0.782609145091327 0.51794439798406 0.8923968 0.89120126 prediction 0.529329494214534 Functional Loss - SCGN ENSG00000079689 CDS Human protein_coding chr6:25665219 chr6:25665221 synonymous SNV . 0 23 hm5C_associated_SNPs_61105 0 0 0 0 2 SCGN chr6:25665171 3'AG 25665171 Downstream 51bp
chr6 25665221 25665221 1 + C T STAD 25665219 + 25665199 25665239 41 AAAACTTTCTTCTGCTCTTTCGCCGGGAAAACCCACTGGAC AAAACTTTCTTCTGCTCTTTCGTCGGGAAAACCCACTGGAC < 41bp 0.782609145091327 0.51794439798406 0.8923968 0.89120126 prediction 0.529329494214534 Functional Loss - SCGN ENSG00000079689 CDS Human protein_coding chr6:25665219 chr6:25665221 synonymous SNV . 0 23 hm5C_associated_SNPs_61105 0 0 0 0 2 SCGN chr6:25665260 5'GT 25665260 Upstream 40bp
chr1 28858744 28858744 1 + C T STAD 28858742 + 28858722 28858762 41 AGGGACACATCAGTGGAGGGCTCGGAGATGGTCCCTGGGAA AGGGACACATCAGTGGAGGGCTTGGAGATGGTCCCTGGGAA < 41bp 0.776285293391993 0.511621111350836 0.24415872 0.28155595 prediction 0.529328364082313 Functional Loss - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28858742 chr1:28858744 nonsynonymous SNV 0.930 4 23 hm5C_associated_SNPs_61106 0 0 1 0 1 RCC1 chr1:28858683 3'AG 28858683 Downstream 62bp
chr5 147040551 147040551 1 - G A KIRC 147040553 - 147040533 147040573 41 CAGTCCCACCAAGAAGCCATCTCGAAGATCAAGTGGGAGTC CAGTCCCACCAAGAAGCCATCTTGAAGATCAAGTGGGAGTC < 41bp 0.764662613055633 0.477338084505162 0.63223064 0.116095245 prediction 0.529325226111266 Functional Loss - JAKMIP2 ENSG00000176049 CDS Human protein_coding chr5:147040553 chr5:147040551 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_61109 0 0 0 0 1 JAKMIP2 chr5:147040511 5'GT 147040511 Upstream 41bp
chr5 161524819 161524819 1 + G T UCEC 161524817 + 161524797 161524837 41 CACTGGATCACCACCCCCAACAGGATGCTGAGAATTTGGAA CACTGGATCACCACCCCCAACATGATGCTGAGAATTTGGAA < 41bp 0.869621281641475 0.604959562431238 0.37385005 0.09181151 prediction 0.529323438420475 Functional Loss - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161524817 chr5:161524819 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_61110 0 0 0 0 1 GABRG2 chr5:161524864 5'GT 161524864 Upstream 46bp
chr10 135370284 135370284 1 - G A UCEC 135370286 - 135370266 135370306 41 TGGAAGATCTGATGGGCCAGCACAAGGACCTCTGGGACTTC TGGAAGATCTGATGGGCCAGCATAAGGACCTCTGGGACTTC < 41bp 0.764658377056316 0.496822452182887 0.24458548 0.29201326 prediction 0.529316754112632 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135370286 chr10:135370284 synonymous SNV . 0 23 hm5C_associated_SNPs_61111 0 0 0 0 2 SYCE1 chr10:135370263 5'GT 135370263 Upstream 22bp
chr10 135370284 135370284 1 - G A UCEC 135370286 - 135370266 135370306 41 TGGAAGATCTGATGGGCCAGCACAAGGACCTCTGGGACTTC TGGAAGATCTGATGGGCCAGCATAAGGACCTCTGGGACTTC < 41bp 0.764658377056316 0.496822452182887 0.24458548 0.29201326 prediction 0.529316754112632 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135370286 chr10:135370284 synonymous SNV . 0 23 hm5C_associated_SNPs_61111 0 0 0 0 2 SYCE1 chr10:135370326 3'AG 135370326 Downstream 43bp
chr17 48541605 48541605 1 + C T SKCM 48541603 + 48541583 48541623 41 CATTGCTGGGTCCCCTGCACCTCCAGAGTTGATCCGAGCCA CATTGCTGGGTCCCCTGCACCTTCAGAGTTGATCCGAGCCA < 41bp 0.833745127220539 0.569087417888426 0.9455066 0.124914944 prediction 0.529315418664225 Functional Loss - ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48541603 chr17:48541605 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_61112 0 0 1 0 2 ACSF2 chr17:48541579 3'AG 48541579 Downstream 27bp
chr17 48541605 48541605 1 + C T SKCM 48541603 + 48541583 48541623 41 CATTGCTGGGTCCCCTGCACCTCCAGAGTTGATCCGAGCCA CATTGCTGGGTCCCCTGCACCTTCAGAGTTGATCCGAGCCA < 41bp 0.833745127220539 0.569087417888426 0.9455066 0.124914944 prediction 0.529315418664225 Functional Loss - ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48541603 chr17:48541605 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_61112 0 0 1 0 2 ACSF2 chr17:48541655 5'GT 48541655 Upstream 51bp
chr7 94052415 94052415 1 + A T HNSC 94052411 + 94052391 94052431 41 CGCTGGTGAGAAGGGTCCCTCTGGAGAGGCTGGTACTGCTG CGCTGGTGAGAAGGGTCCCTCTGGTGAGGCTGGTACTGCTG < 41bp 0.847502654076977 0.582846366691039 0.4176241 0.42119983 prediction 0.529312574771875 Functional Loss - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94052411 chr7:94052415 synonymous SNV . 0 25 hm5C_associated_SNPs_61113 0 0 0 0 1 COL1A2 chr7:94052430 5'GT 94052430 Upstream 16bp
chr3 100058674 100058674 1 + C T HNSC 100058672 + 100058652 100058692 41 TTTCTAGGAATGCTTTAATTCTCCATATGGAGCGAAATATT TTTCTAGGAATGCTTTAATTCTTCATATGGAGCGAAATATT < 41bp 0.764647472621108 0.474038983463046 0.92877513 0.2229684 prediction 0.529294945242217 Functional Loss - NIT2 ENSG00000114021 CDS Human protein_coding chr3:100058672 chr3:100058674 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_61114 0 0 1 0 1 NIT2 chr3:100058659 3'AG 100058659 Downstream 16bp
chr17 72363819 72363819 1 + C T SKCM 72363817 + 72363797 72363837 41 CCATTCCAGGTGGCTGAGGTCTCCACAGGTCACAGGGGGAA CCATTCCAGGTGGCTGAGGTCTTCACAGGTCACAGGGGGAA < 41bp 0.785855591305348 0.521211864484297 0.9194608 0.5417551 prediction 0.529287453642103 Functional Loss - GPR142 ENSG00000257008 CDS Human protein_coding chr17:72363817 chr17:72363819 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_61115 0 0 0 0 1 GPR142 chr17:72363887 5'GT 72363887 Upstream 69bp
chr3 127339608 127339608 1 + C T KICH 127339606 + 127339586 127339626 41 ATCCGCATGGCGGAGGCCCACGCGCGCATCCATCTGCGGGA ATCCGCATGGCGGAGGCCCACGTGCGCATCCATCTGCGGGA < 41bp 0.769515922787706 0.504876979560609 0.8825756 0.6703819 prediction 0.529277886454194 Functional Loss - MCM2 ENSG00000073111 CDS Human protein_coding chr3:127339606 chr3:127339608 nonsynonymous SNV 0.440 2 23 hm5C_associated_SNPs_61116 0 0 1 0 1 MCM2 chr3:127339541 3'AG 127339541 Downstream 68bp
chr7 16705117 16705117 1 + C T OV 16705115 + 16705095 16705135 41 AACAGGCCAGCGGTTCAAAACTCGGAAAAGGGGTAGGTTGT AACAGGCCAGCGGTTCAAAACTTGGAAAAGGGGTAGGTTGT < 41bp 0.785455154619437 0.520819693139306 0.09821886 0.06540117 prediction 0.529270922960261 Functional Loss - BZW2 ENSG00000136261 CDS Human protein_coding chr7:16705115 chr7:16705117 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_61118 0 0 1 0 2 BZW2 chr7:16705062 3'AG 16705062 Downstream 56bp
chr7 16705117 16705117 1 + C T OV 16705115 + 16705095 16705135 41 AACAGGCCAGCGGTTCAAAACTCGGAAAAGGGGTAGGTTGT AACAGGCCAGCGGTTCAAAACTTGGAAAAGGGGTAGGTTGT < 41bp 0.785455154619437 0.520819693139306 0.09821886 0.06540117 prediction 0.529270922960261 Functional Loss - BZW2 ENSG00000136261 CDS Human protein_coding chr7:16705115 chr7:16705117 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_61118 0 0 1 0 2 BZW2 chr7:16705126 5'GT 16705126 Upstream 10bp
chr12 6630171 6630171 1 + C T ESCA 6630169 + 6630149 6630189 41 CAGAAAGGCCATCATTCTCACTCGAGAAGCCACAGGCCACT CAGAAAGGCCATCATTCTCACTTGAGAAGCCACAGGCCACT < 41bp 0.802572477540613 0.537957313311062 0.61991936 0.31922638 prediction 0.529230328459102 Functional Loss - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6630169 chr12:6630171 stopgain 0.867 0 23 hm5C_associated_SNPs_61119 0 0 1 0 1 NCAPD2 chr12:6630152 3'AG 6630152 Downstream 20bp
chr20 47679815 47679815 1 + G T UCEC 47679813 + 47679793 47679833 41 TGACATTACTGGAGAAGTCCCAGGATAATGTTATCAAAGTA TGACATTACTGGAGAAGTCCCATGATAATGTTATCAAAGTA < 41bp 0.764610589527753 0.455340826113364 0.6618692 0.20212796 prediction 0.529221179055505 Functional Loss - CSE1L ENSG00000124207 CDS Human protein_coding chr20:47679813 chr20:47679815 nonsynonymous SNV 0.986 2 23 hm5C_associated_SNPs_61122 0 0 1 0 3 CSE1L chr20:47679739 3'AG 47679739 Downstream 77bp
chr20 47679815 47679815 1 + G T UCEC 47679813 + 47679793 47679833 41 TGACATTACTGGAGAAGTCCCAGGATAATGTTATCAAAGTA TGACATTACTGGAGAAGTCCCATGATAATGTTATCAAAGTA < 41bp 0.764610589527753 0.455340826113364 0.6618692 0.20212796 prediction 0.529221179055505 Functional Loss - CSE1L ENSG00000124207 CDS Human protein_coding chr20:47679813 chr20:47679815 nonsynonymous SNV 0.986 2 23 hm5C_associated_SNPs_61122 0 0 1 0 3 CSE1L chr20:47679830 5'GT 47679830 Upstream 16bp
chr20 47679815 47679815 1 + G T UCEC 47679813 + 47679793 47679833 41 TGACATTACTGGAGAAGTCCCAGGATAATGTTATCAAAGTA TGACATTACTGGAGAAGTCCCATGATAATGTTATCAAAGTA < 41bp 0.764610589527753 0.455340826113364 0.6618692 0.20212796 prediction 0.529221179055505 Functional Loss - CSE1L ENSG00000124207 CDS Human protein_coding chr20:47679813 chr20:47679815 nonsynonymous SNV 0.986 2 23 hm5C_associated_SNPs_61122 0 0 1 0 3 CSE1L chr20:47679881 5'GT 47679881 Upstream 67bp
chr17 65021073 65021073 1 + G T UCEC 65021070 + 65021050 65021090 41 GCTGGCAGGATCTACAGCCGCAAGAACAACATCGTCCTCAG GCTGGCAGGATCTACAGCCGCAATAACAACATCGTCCTCAG < 41bp 0.912280029629608 0.647674753011315 0.42809975 0.4407325 prediction 0.529210553236584 Functional Loss - CACNG4 ENSG00000075461 CDS Human protein_coding chr17:65021070 chr17:65021073 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_61125 0 0 0 0 2 CACNG4 chr17:65020976 3'AG 65020976 Downstream 98bp
chr17 65021073 65021073 1 + G T UCEC 65021070 + 65021050 65021090 41 GCTGGCAGGATCTACAGCCGCAAGAACAACATCGTCCTCAG GCTGGCAGGATCTACAGCCGCAATAACAACATCGTCCTCAG < 41bp 0.912280029629608 0.647674753011315 0.42809975 0.4407325 prediction 0.529210553236584 Functional Loss - CACNG4 ENSG00000075461 CDS Human protein_coding chr17:65021070 chr17:65021073 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_61125 0 0 0 0 2 CACNG4 chr17:65021116 5'GT 65021116 Upstream 44bp
chr3 9985140 9985140 1 + G T SARC 9985138 + 9985118 9985158 41 AACACCGAGGGCGGTTATCGCTGCATCTGTGCCGAGGGCTA AACACCGAGGGCGGTTATCGCTTCATCTGTGCCGAGGGCTA < 41bp 0.862341631893291 0.597744355744235 0.31777674 0.21621025 prediction 0.529194552298112 Functional Loss - CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9985138 chr3:9985140 nonsynonymous SNV 0.672 5 23 hm5C_associated_SNPs_61127 0 0 1 0 2 CRELD1 chr3:9985065 3'AG 9985065 Downstream 76bp
chr3 9985140 9985140 1 + G T SARC 9985138 + 9985118 9985158 41 AACACCGAGGGCGGTTATCGCTGCATCTGTGCCGAGGGCTA AACACCGAGGGCGGTTATCGCTTCATCTGTGCCGAGGGCTA < 41bp 0.862341631893291 0.597744355744235 0.31777674 0.21621025 prediction 0.529194552298112 Functional Loss - CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9985138 chr3:9985140 nonsynonymous SNV 0.672 5 23 hm5C_associated_SNPs_61127 0 0 1 0 2 CRELD1 chr3:9985199 5'GT 9985199 Upstream 60bp
chr12 83358817 83358817 1 + A T LUAD 83358813 + 83358793 83358833 41 CCTCATGCAGAGGGCTACTTCTCCAGGAGAACAGCAGGTTT CCTCATGCAGAGGGCTACTTCTCCTGGAGAACAGCAGGTTT < 41bp 0.764572255089473 0.428790842537141 0.9584356 0.10106143 prediction 0.529144510178946 Functional Loss - TMTC2 ENSG00000179104 CDS Human protein_coding chr12:83358813 chr12:83358817 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_61130 0 0 0 0 2 TMTC2 chr12:83358803 3'AG 83358803 Downstream 15bp
chr12 83358817 83358817 1 + A T LUAD 83358813 + 83358793 83358833 41 CCTCATGCAGAGGGCTACTTCTCCAGGAGAACAGCAGGTTT CCTCATGCAGAGGGCTACTTCTCCTGGAGAACAGCAGGTTT < 41bp 0.764572255089473 0.428790842537141 0.9584356 0.10106143 prediction 0.529144510178946 Functional Loss - TMTC2 ENSG00000179104 CDS Human protein_coding chr12:83358813 chr12:83358817 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_61130 0 0 0 0 2 TMTC2 chr12:83358888 5'GT 83358888 Upstream 72bp
chr3 40457427 40457427 1 + G T OV 40457425 + 40457405 40457445 41 CACCCAAATATCCTTCGTGGCAGGAGAGAAGATGGATCTGA CACCCAAATATCCTTCGTGGCATGAGAGAAGATGGATCTGA < 41bp 0.88451322999004 0.619941266941367 0.48575735 0.29286042 prediction 0.529143926097347 Functional Loss - ENTPD3 ENSG00000168032 CDS Human protein_coding chr3:40457425 chr3:40457427 stopgain 0.849 0 23 hm5C_associated_SNPs_61131 0 0 0 0 1 ENTPD3 chr3:40457331 3'AG 40457331 Downstream 97bp
chr7 20795083 20795083 1 + G T LUAD 20795081 + 20795061 20795101 41 TGCCCTTGATAAAGCCAGGACGGGAAGGACATGCCTAGTGG TGCCCTTGATAAAGCCAGGACGTGAAGGACATGCCTAGTGG < 41bp 0.764558550099036 0.450806250587981 0.30880743 0.2020106 prediction 0.529117100198071 Functional Loss - ABCB5 ENSG00000004846 CDS Human protein_coding chr7:20795081 chr7:20795083 stopgain 0.458 1 23 hm5C_associated_SNPs_61134 0 0 0 0 1 ABCB5 chr7:20795050 3'AG 20795050 Downstream 34bp
chr1 210001421 210001421 1 + G T MESO 210001418 + 210001398 210001438 41 ACGTTTTCGCTATGGGCAAACGCGGGAGCCGGAGCCAGAGC ACGTTTTCGCTATGGGCAAACGCTGGAGCCGGAGCCAGAGC < 41bp 0.764554188222653 0.389592637011562 0.9035915 0.31552088 prediction 0.529108376445306 Functional Loss - DIEXF ENSG00000117597 CDS Human protein_coding chr1:210001418 chr1:210001421 nonsynonymous SNV 0.534 2 24 hm5C_associated_SNPs_61137 0 0 1 0 1 DIEXF chr1:210001515 5'GT 210001515 Upstream 95bp
chr19 50957377 50957377 1 + C T SKCM 50957375 + 50957355 50957395 41 CGGGAAGACGAGGGCCGCTACACCATCAAGGTCACCAACCC CGGGAAGACGAGGGCCGCTACATCATCAAGGTCACCAACCC < 41bp 0.80471560098718 0.540175878673644 0.26906452 0.02229178 prediction 0.529079444627072 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957375 chr19:50957377 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_61139 0 0 0 0 1 MYBPC2 chr19:50957436 5'GT 50957436 Upstream 60bp
chr21 33346916 33346916 1 + A T HNSC 33346912 + 33346892 33346932 41 AGCGTCGTGCTGCACATGACCGAGAAGCTGGGTTACAAGAA AGCGTCGTGCTGCACATGACCGAGTAGCTGGGTTACAAGAA < 41bp 0.764532152455255 0.438794250239557 0.31628188 0.24533594 prediction 0.52906430491051 Functional Loss - HUNK ENSG00000142149 CDS Human protein_coding chr21:33346912 chr21:33346916 stopgain 0.979 0 25 hm5C_associated_SNPs_61140 0 0 0 0 1 HUNK chr21:33346867 3'AG 33346867 Downstream 50bp
chrX 54841738 54841738 1 + G T LUAD 54841736 + 54841716 54841756 41 GTACCGAGAGGCGATGGAAGCGGATTTGAAGGCTGCAGCTG GTACCGAGAGGCGATGGAAGCGTATTTGAAGGCTGCAGCTG < 41bp 0.878473314594983 0.613961079766162 0.8708308 0.39101708 prediction 0.529024469657642 Functional Loss - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54841736 chrX:54841738 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_61143 0 0 1 0 1 MAGED2 chrX:54841681 3'AG 54841681 Downstream 58bp
chr11 65046351 65046351 1 + G C LUSC 65046347 + 65046327 65046367 41 GGGATGTCCAGAGGCACTAACTGGGAGCTACAAATCCATGT GGGATGTCCAGAGGCACTAACTGGCAGCTACAAATCCATGT < 41bp 0.81754175902287 0.553032234728507 0.83423007 0.785895 prediction 0.529019048588725 Functional Loss - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65046347 chr11:65046351 synonymous SNV . 0 25 hm5C_associated_SNPs_61144 0 0 1 0 1 POLA2 chr11:65046394 5'GT 65046394 Upstream 44bp
chr7 99689352 99689352 1 + G T GBM 99689349 + 99689329 99689369 41 ACCATGAACCAGTTTGTGAACAAGTTCAATGTCCTCTACGA ACCATGAACCAGTTTGTGAACAATTTCAATGTCCTCTACGA < 41bp 0.764505930206044 0.381181075039263 0.36035332 0.13920262 prediction 0.529011860412087 Functional Loss - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99689349 chr7:99689352 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_61146 0 0 1 0 1 COPS6 chr7:99689272 3'AG 99689272 Downstream 81bp
chr12 57858542 57858542 1 + G T UCEC 57858539 + 57858519 57858559 41 CACCTCTGTCGGATGCCAGCCTGGACCTGCAGACGGTTATC CACCTCTGTCGGATGCCAGCCTGTACCTGCAGACGGTTATC < 41bp 0.764505314911222 0.371008858546512 0.27512068 0.10090464 prediction 0.529010629822444 Functional Loss - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57858539 chr12:57858542 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_61147 0 0 0 0 2 GLI1 chr12:57858456 3'AG 57858456 Downstream 87bp
chr12 57858542 57858542 1 + G T UCEC 57858539 + 57858519 57858559 41 CACCTCTGTCGGATGCCAGCCTGGACCTGCAGACGGTTATC CACCTCTGTCGGATGCCAGCCTGTACCTGCAGACGGTTATC < 41bp 0.764505314911222 0.371008858546512 0.27512068 0.10090464 prediction 0.529010629822444 Functional Loss - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57858539 chr12:57858542 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_61147 0 0 0 0 2 GLI1 chr12:57858486 3'AG 57858486 Downstream 57bp
chr11 117988126 117988126 1 + C T UCEC 117988124 + 117988104 117988144 41 CCGAGCACCCCAGGAGTATACACCAAGGTCTCAGCCTATCT CCGAGCACCCCAGGAGTATACATCAAGGTCTCAGCCTATCT < 41bp 0.796715096694004 0.532236948045038 0.32273826 0.18493524 prediction 0.528956297297931 Functional Loss - TMPRSS4 ENSG00000137648 CDS Human protein_coding chr11:117988124 chr11:117988126 nonsynonymous SNV 0.904 4 23 hm5C_associated_SNPs_61153 0 0 0 0 1 TMPRSS4 chr11:117988169 5'GT 117988169 Upstream 44bp
chr8 21955777 21955777 1 + G C UCEC 21955773 + 21955753 21955793 41 GAGGAGCTGGACGGTGGGACCACAGAGAGCAACCTGATTAC GAGGAGCTGGACGGTGGGACCACACAGAGCAACCTGATTAC < 41bp 0.764472814475565 0.475399358614112 0.19516516 0.074929625 prediction 0.528945628951131 Functional Loss - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21955773 chr8:21955777 nonsynonymous SNV 0.470 0 25 hm5C_associated_SNPs_61154 0 0 1 0 1 FAM160B2 chr8:21955821 5'GT 21955821 Upstream 45bp
chr5 156668715 156668715 1 + G T OV 156668713 + 156668693 156668733 41 GAGGCAGAAAGCCCCAGTTACAGCAGGGCTGAGATACGGTG GAGGCAGAAAGCCCCAGTTACATCAGGGCTGAGATACGGTG < 41bp 0.764472612041502 0.419461604257289 0.45097414 0.22077057 prediction 0.528945224083004 Functional Loss - ITK ENSG00000113263 CDS Human protein_coding chr5:156668713 chr5:156668715 nonsynonymous SNV 0.122 1 23 hm5C_associated_SNPs_61155 0 0 0 0 2 ITK chr5:156668656 3'AG 156668656 Downstream 60bp
chr5 156668715 156668715 1 + G T OV 156668713 + 156668693 156668733 41 GAGGCAGAAAGCCCCAGTTACAGCAGGGCTGAGATACGGTG GAGGCAGAAAGCCCCAGTTACATCAGGGCTGAGATACGGTG < 41bp 0.764472612041502 0.419461604257289 0.45097414 0.22077057 prediction 0.528945224083004 Functional Loss - ITK ENSG00000113263 CDS Human protein_coding chr5:156668713 chr5:156668715 nonsynonymous SNV 0.122 1 23 hm5C_associated_SNPs_61155 0 0 0 0 2 ITK chr5:156668730 5'GT 156668730 Upstream 16bp
chr20 62655977 62655977 1 + G T COAD 62655974 + 62655954 62655994 41 AAAGCAGAGGTGCTGTGGCTCATGGGCGCCAAGTCCAAGTG AAAGCAGAGGTGCTGTGGCTCATTGGCGCCAAGTCCAAGTG < 41bp 0.764457826519714 0.365724337739967 0.77196956 0.22727624 prediction 0.528915653039428 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62655974 chr20:62655977 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_61158 0 0 1 0 2 PRPF6 chr20:62655908 3'AG 62655908 Downstream 70bp
chr20 62655977 62655977 1 + G T COAD 62655974 + 62655954 62655994 41 AAAGCAGAGGTGCTGTGGCTCATGGGCGCCAAGTCCAAGTG AAAGCAGAGGTGCTGTGGCTCATTGGCGCCAAGTCCAAGTG < 41bp 0.764457826519714 0.365724337739967 0.77196956 0.22727624 prediction 0.528915653039428 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62655974 chr20:62655977 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_61158 0 0 1 0 2 PRPF6 chr20:62656046 5'GT 62656046 Upstream 70bp
chr14 105394135 105394135 1 + G T UCEC 105394132 + 105394112 105394152 41 CCCAAGGACGTGCCCAGGTCCTGGGAGCATGGCTCCAGCCC CCCAAGGACGTGCCCAGGTCCTGTGAGCATGGCTCCAGCCC < 41bp 0.909183357732047 0.644727867195431 0.87155783 0.45447195 prediction 0.528910981073232 Functional Loss - PLD4 ENSG00000166428 CDS Human protein_coding chr14:105394132 chr14:105394135 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_61161 0 0 0 0 1 PLD4 chr14:105394203 5'GT 105394203 Upstream 69bp
chr1 152944426 152944426 1 + G T LIHC 152944424 + 152944404 152944444 41 GCCCACCCCAGAGGGCCCAGCAGCAGCAAGTGAAGCAGCCT GCCCACCCCAGAGGGCCCAGCATCAGCAAGTGAAGCAGCCT < 41bp 0.872770909715373 0.608324210590101 0.55684394 0.08280888 prediction 0.528893398250544 Functional Loss - SPRR4 ENSG00000184148 CDS Human protein_coding chr1:152944424 chr1:152944426 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_61162 0 0 0 0 1 SPRR4 chr1:152944347 3'AG 152944347 Downstream 80bp
chr2 223559872 223559872 1 + G T LUAD 223559870 + 223559850 223559890 41 GTTTAAACAAACTGACAACCCTGAAGGATCATGGATTAGAA GTTTAAACAAACTGACAACCCTTAAGGATCATGGATTAGAA < 41bp 0.764437979504798 0.448823944801605 0.051392704 0.022595823 prediction 0.528875959009597 Functional Loss - MOGAT1 ENSG00000124003 CDS Human protein_coding chr2:223559870 chr2:223559872 stopgain 0.678 0 23 hm5C_associated_SNPs_61164 0 0 0 0 1 MOGAT1 chr2:223559808 3'AG 223559808 Downstream 65bp
chr7 133749104 133749104 1 + G T LUAD 133749102 + 133749082 133749122 41 TCCTGAACCTGGTGGTGGACCAGGGTGTGAAGTACACGGAG TCCTGAACCTGGTGGTGGACCATGGTGTGAAGTACACGGAG < 41bp 0.779622956477013 0.515197435131577 0.8878456 0.37892812 prediction 0.528851042690873 Functional Loss - EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133749102 chr7:133749104 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_61166 0 0 1 0 1 EXOC4 chr7:133749044 3'AG 133749044 Downstream 61bp
chr1 1115066 1115066 1 + G T UCEC 1115064 + 1115044 1115084 41 CCCTGCGTCACGTCTGCACCCAGCACCGGCCTCACAGCCCG CCCTGCGTCACGTCTGCACCCATCACCGGCCTCACAGCCCG < 41bp 0.878630650632611 0.614219015888997 0.11876258 0.04282233 prediction 0.528823269487229 Functional Loss - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1115064 chr1:1115066 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_61169 0 0 0 0 2 TTLL10 chr1:1115037 3'AG 1115037 Downstream 30bp
chr1 1115066 1115066 1 + G T UCEC 1115064 + 1115044 1115084 41 CCCTGCGTCACGTCTGCACCCAGCACCGGCCTCACAGCCCG CCCTGCGTCACGTCTGCACCCATCACCGGCCTCACAGCCCG < 41bp 0.878630650632611 0.614219015888997 0.11876258 0.04282233 prediction 0.528823269487229 Functional Loss - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1115064 chr1:1115066 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_61169 0 0 0 0 2 TTLL10 chr1:1115117 5'GT 1115117 Upstream 52bp
chr12 121615214 121615214 1 + A T LUSC 121615210 + 121615190 121615230 41 TGTGTGGTCAACGAATACTACTACAGGAAGAAGTGCGAGTC TGTGTGGTCAACGAATACTACTACTGGAAGAAGTGCGAGTC < 41bp 0.764404602765469 0.41166557991223 0.19797555 0.1048556 prediction 0.528809205530939 Functional Loss - P2RX7 ENSG00000089041 CDS Human protein_coding chr12:121615210 chr12:121615214 nonsynonymous SNV 0.989 2 25 hm5C_associated_SNPs_61171 0 0 0 0 1 P2RX7 chr12:121615249 5'GT 121615249 Upstream 36bp
chr1 214503600 214503600 1 + G T GBM 214503598 + 214503578 214503618 41 ATTTCTTTACCTGTGAGTGCCAGGAGTGTACCACCAAGGAC ATTTCTTTACCTGTGAGTGCCATGAGTGTACCACCAAGGAC < 41bp 0.856545185264365 0.592150701410627 0.89650965 0.38922572 prediction 0.528788967707476 Functional Loss - SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214503598 chr1:214503600 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_61172 0 0 1 1 2 SMYD2 chr1:214503511 3'AG 214503511 Downstream 90bp
chr1 214503600 214503600 1 + G T GBM 214503598 + 214503578 214503618 41 ATTTCTTTACCTGTGAGTGCCAGGAGTGTACCACCAAGGAC ATTTCTTTACCTGTGAGTGCCATGAGTGTACCACCAAGGAC < 41bp 0.856545185264365 0.592150701410627 0.89650965 0.38922572 prediction 0.528788967707476 Functional Loss - SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214503598 chr1:214503600 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_61172 0 0 1 1 2 SMYD2 chr1:214503621 5'GT 214503621 Upstream 22bp
chr3 119236139 119236139 1 + C T SKCM 119236137 + 119236117 119236157 41 AACAGAAGGATCGAAAGGCACTCCATGAGCTAAAACTGGAA AACAGAAGGATCGAAAGGCACTTCATGAGCTAAAACTGGAA < 41bp 0.81717532871816 0.552783424086008 0.9250574 0.12436974 prediction 0.528783809264304 Functional Loss - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119236137 chr3:119236139 synonymous SNV . 0 23 hm5C_associated_SNPs_61173 0 0 1 1 2 TIMMDC1 chr3:119236052 3'AG 119236052 Downstream 88bp
chr3 119236139 119236139 1 + C T SKCM 119236137 + 119236117 119236157 41 AACAGAAGGATCGAAAGGCACTCCATGAGCTAAAACTGGAA AACAGAAGGATCGAAAGGCACTTCATGAGCTAAAACTGGAA < 41bp 0.81717532871816 0.552783424086008 0.9250574 0.12436974 prediction 0.528783809264304 Functional Loss - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119236137 chr3:119236139 synonymous SNV . 0 23 hm5C_associated_SNPs_61173 0 0 1 1 2 TIMMDC1 chr3:119236162 5'GT 119236162 Upstream 24bp
chr12 50453734 50453734 1 + G T UCEC 50453731 + 50453711 50453751 41 GTCTGCAGCGCTGAAGACTTCAAGGTGGTGAGTCCCCTCGT GTCTGCAGCGCTGAAGACTTCAATGTGGTGAGTCCCCTCGT < 41bp 0.911079095323609 0.646691134012502 0.9169879 0.79943717 prediction 0.528775922622214 Functional Loss - ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50453731 chr12:50453734 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_61174 0 0 0 0 1 ASIC1 chr12:50453737 5'GT 50453737 Upstream 4bp
chr19 7975657 7975657 1 + C T SARC 7975655 + 7975635 7975675 41 AAGCGGATGCAGGGCCCCATCCCCGAGCGCATTCTGGGCAA AAGCGGATGCAGGGCCCCATCCTCGAGCGCATTCTGGGCAA < 41bp 0.764377651916524 0.491592375275341 0.333399 0.14363867 prediction 0.528755303833048 Functional Loss - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7975655 chr19:7975657 nonsynonymous SNV 0.934 4 23 hm5C_associated_SNPs_61175 0 0 1 0 2 MAP2K7 chr19:7975581 3'AG 7975581 Downstream 77bp
chr19 7975657 7975657 1 + C T SARC 7975655 + 7975635 7975675 41 AAGCGGATGCAGGGCCCCATCCCCGAGCGCATTCTGGGCAA AAGCGGATGCAGGGCCCCATCCTCGAGCGCATTCTGGGCAA < 41bp 0.764377651916524 0.491592375275341 0.333399 0.14363867 prediction 0.528755303833048 Functional Loss - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7975655 chr19:7975657 nonsynonymous SNV 0.934 4 23 hm5C_associated_SNPs_61175 0 0 1 0 2 MAP2K7 chr19:7975688 5'GT 7975688 Upstream 32bp
chr5 1244406 1244406 1 + G C CESC 1244405 + 1244385 1244425 41 AACTACTGGCTGGAGATTTTCGACAATTTTGCCGCTTCCCC AACTACTGGCTGGAGATTTTCCACAATTTTGCCGCTTCCCC < 41bp 0.843991502305729 0.579615348202998 0.29825452 0.03324449 prediction 0.528752308205463 Functional Loss - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1244405 chr5:1244406 nonsynonymous SNV 0.157 5 22 hm5C_associated_SNPs_61176 0 0 0 0 2 SLC6A18 chr5:1244329 3'AG 1244329 Downstream 78bp
chr5 1244406 1244406 1 + G C CESC 1244405 + 1244385 1244425 41 AACTACTGGCTGGAGATTTTCGACAATTTTGCCGCTTCCCC AACTACTGGCTGGAGATTTTCCACAATTTTGCCGCTTCCCC < 41bp 0.843991502305729 0.579615348202998 0.29825452 0.03324449 prediction 0.528752308205463 Functional Loss - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1244405 chr5:1244406 nonsynonymous SNV 0.157 5 22 hm5C_associated_SNPs_61176 0 0 0 0 2 SLC6A18 chr5:1244488 5'GT 1244488 Upstream 83bp
chr1 174973881 174973881 1 + G T GBM 174973879 + 174973859 174973899 41 ACAAGATGCAACAGAAATCACAGAAGAAAGCAGAACTTCTT ACAAGATGCAACAGAAATCACATAAGAAAGCAGAACTTCTT < 41bp 0.764373765464333 0.441245644615843 0.30055296 0.1393049 prediction 0.528747530928666 Functional Loss - CACYBP ENSG00000116161 CDS Human protein_coding chr1:174973879 chr1:174973881 nonsynonymous SNV 0.980 3 23 hm5C_associated_SNPs_61177 0 0 1 0 1 CACYBP chr1:174973969 5'GT 174973969 Upstream 89bp
chr11 2417894 2417894 1 + G C SARC 2417890 + 2417870 2417910 41 CAGAAGATCGATGACCTCTTCTCCGGGAAGCTGTACCTCAT CAGAAGATCGATGACCTCTTCTCCCGGAAGCTGTACCTCAT < 41bp 0.764367083191654 0.49601204485497 0.3723849 0.41581553 prediction 0.528734166383309 Functional Loss - CD81 ENSG00000110651 CDS Human protein_coding chr11:2417890 chr11:2417894 nonsynonymous SNV 0.932 3 25 hm5C_associated_SNPs_61179 0 0 1 0 2 CD81 chr11:2417858 3'AG 2417858 Downstream 37bp
chr11 2417894 2417894 1 + G C SARC 2417890 + 2417870 2417910 41 CAGAAGATCGATGACCTCTTCTCCGGGAAGCTGTACCTCAT CAGAAGATCGATGACCTCTTCTCCCGGAAGCTGTACCTCAT < 41bp 0.764367083191654 0.49601204485497 0.3723849 0.41581553 prediction 0.528734166383309 Functional Loss - CD81 ENSG00000110651 CDS Human protein_coding chr11:2417890 chr11:2417894 nonsynonymous SNV 0.932 3 25 hm5C_associated_SNPs_61179 0 0 1 0 2 CD81 chr11:2417944 5'GT 2417944 Upstream 51bp
chr1 26156121 26156121 1 + G T COAD 26156118 + 26156098 26156138 41 TTTGTCATTAGTGACATCACCGAGGAGACAGAGGTGGAGGT TTTGTCATTAGTGACATCACCGATGAGACAGAGGTGGAGGT < 41bp 0.764364432082716 0.374094507570342 0.39326802 0.10442108 prediction 0.528728864165432 Functional Loss - MTFR1L ENSG00000117640 CDS Human protein_coding chr1:26156118 chr1:26156121 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_61181 0 0 1 0 2 MTFR1L chr1:26156036 3'AG 26156036 Downstream 86bp
chr1 26156121 26156121 1 + G T COAD 26156118 + 26156098 26156138 41 TTTGTCATTAGTGACATCACCGAGGAGACAGAGGTGGAGGT TTTGTCATTAGTGACATCACCGATGAGACAGAGGTGGAGGT < 41bp 0.764364432082716 0.374094507570342 0.39326802 0.10442108 prediction 0.528728864165432 Functional Loss - MTFR1L ENSG00000117640 CDS Human protein_coding chr1:26156118 chr1:26156121 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_61181 0 0 1 0 2 MTFR1L chr1:26156109 3'AG 26156109 Downstream 13bp
chr3 129195555 129195555 1 + G T ESCA 129195553 + 129195533 129195573 41 TCCTTCTACCAGCTTATTTTCAGCACAGTCCATGGGCTTTA TCCTTCTACCAGCTTATTTTCATCACAGTCCATGGGCTTTA < 41bp 0.844982495452514 0.580622200150139 0.77678806 0.21146092 prediction 0.528720590604751 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129195553 chr3:129195555 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_61182 0 0 1 0 2 IFT122 chr3:129195506 3'AG 129195506 Downstream 50bp
chr3 129195555 129195555 1 + G T ESCA 129195553 + 129195533 129195573 41 TCCTTCTACCAGCTTATTTTCAGCACAGTCCATGGGCTTTA TCCTTCTACCAGCTTATTTTCATCACAGTCCATGGGCTTTA < 41bp 0.844982495452514 0.580622200150139 0.77678806 0.21146092 prediction 0.528720590604751 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129195553 chr3:129195555 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_61182 0 0 1 0 2 IFT122 chr3:129195644 5'GT 129195644 Upstream 90bp
chr1 231830497 231830497 1 + G T UCEC 231830494 + 231830474 231830514 41 CACTCTTGGGACACCCTGCTCAGGAAATGGGAGCCAGTGCT CACTCTTGGGACACCCTGCTCAGTAAATGGGAGCCAGTGCT < 41bp 0.764337311665004 0.414390340856443 0.93000555 0.25508437 prediction 0.528674623330007 Functional Loss - DISC1 ENSG00000162946 CDS Human protein_coding chr1:231830494 chr1:231830497 nonsynonymous SNV 0.054 0 24 hm5C_associated_SNPs_61185 0 0 0 0 1 DISC1 chr1:231830551 5'GT 231830551 Upstream 55bp
chr19 49671542 49671542 1 + G T UCS 49671540 + 49671520 49671560 41 CCTGGATTGTCACTGGGGGTCTGCACACGGGCATCGGCCGG CCTGGATTGTCACTGGGGGTCTTCACACGGGCATCGGCCGG < 41bp 0.764325167187649 0.4273503129413 0.5507152 0.7234388 prediction 0.528650334375298 Functional Loss - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49671540 chr19:49671542 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_61187 0 0 1 0 1 TRPM4 chr19:49671517 3'AG 49671517 Downstream 26bp
chr21 45563136 45563136 1 + G C HNSC 45563132 + 45563112 45563152 41 GCGGCCAAGGTGCTCAGAGGCGTCGAGGTGACTGTGGGCCA GCGGCCAAGGTGCTCAGAGGCGTCCAGGTGACTGTGGGCCA < 41bp 0.764312616634339 0.481515782579339 0.6829891 0.7480245 prediction 0.528625233268679 Functional Loss - C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45563132 chr21:45563136 nonsynonymous SNV 0.495 2 25 hm5C_associated_SNPs_61188 0 0 1 0 1 C21orf33 chr21:45563087 3'AG 45563087 Downstream 50bp
chr2 85806263 85806263 1 + C T UCEC 85806261 + 85806241 85806281 41 GGGAAAACTTGGAACATCTCCGCAACAAGACAGAGGATCTG GGGAAAACTTGGAACATCTCCGTAACAAGACAGAGGATCTG < 41bp 0.783904870006149 0.519607618486655 0.11856079 0.11661214 prediction 0.528594503038988 Functional Loss - VAMP8 ENSG00000118640 CDS Human protein_coding chr2:85806261 chr2:85806263 synonymous SNV . 0 23 hm5C_associated_SNPs_61189 0 0 1 0 1 VAMP8 chr2:85806290 5'GT 85806290 Upstream 28bp
chr2 158974404 158974404 1 + G C LUSC 158974400 + 158974380 158974420 41 CATCAAATTACTCCACCATGCACGGTGCTGCGATGTCACCA CATCAAATTACTCCACCATGCACGCTGCTGCGATGTCACCA < 41bp 0.764296522258703 0.485656986084126 0.07084802 0.036397427 prediction 0.528593044517405 Functional Loss - UPP2 ENSG00000007001 CDS Human protein_coding chr2:158974400 chr2:158974404 synonymous SNV . 0 25 hm5C_associated_SNPs_61190 0 0 0 0 2 UPP2 chr2:158974336 3'AG 158974336 Downstream 69bp
chr2 158974404 158974404 1 + G C LUSC 158974400 + 158974380 158974420 41 CATCAAATTACTCCACCATGCACGGTGCTGCGATGTCACCA CATCAAATTACTCCACCATGCACGCTGCTGCGATGTCACCA < 41bp 0.764296522258703 0.485656986084126 0.07084802 0.036397427 prediction 0.528593044517405 Functional Loss - UPP2 ENSG00000007001 CDS Human protein_coding chr2:158974400 chr2:158974404 synonymous SNV . 0 25 hm5C_associated_SNPs_61190 0 0 0 0 2 UPP2 chr2:158974450 5'GT 158974450 Upstream 47bp
chr17 40721585 40721585 1 + C T STAD 40721583 + 40721563 40721603 41 AAGCAGGAGGAGGAGGTGTCCACGTTACGCAAGGATGTCAC AAGCAGGAGGAGGAGGTGTCCATGTTACGCAAGGATGTCAC < 41bp 0.78642825850559 0.522133293650139 0.15120015 0.24784005 prediction 0.528589929710902 Functional Loss - MLX ENSG00000108788 CDS Human protein_coding chr17:40721583 chr17:40721585 nonsynonymous SNV 0.898 2 23 hm5C_associated_SNPs_61191 0 0 1 0 1 MLX chr17:40721525 3'AG 40721525 Downstream 61bp
chr1 156618374 156618374 1 + G T UCEC 156618371 + 156618351 156618391 41 TCCACCCAGGAGAACTGTTCCTGGGTGACCCTCCAGAGAAG TCCACCCAGGAGAACTGTTCCTGTGTGACCCTCCAGAGAAG < 41bp 0.764292752093146 0.365072642194419 0.91406 0.07064772 prediction 0.528585504186293 Functional Loss - BCAN ENSG00000132692 CDS Human protein_coding chr1:156618371 chr1:156618374 nonsynonymous SNV 0.159 2 24 hm5C_associated_SNPs_61192 0 0 0 0 1 BCAN chr1:156618360 3'AG 156618360 Downstream 15bp
chr9 104075207 104075207 1 + C T UCEC 104075205 + 104075185 104075225 41 TCTGAGTATCGGAACCACTGCTCGGACGTGATTGCTGGTTT TCTGAGTATCGGAACCACTGCTTGGACGTGATTGCTGGTTT < 41bp 0.795251828298422 0.530963838200318 0.37478507 0.22095835 prediction 0.528575980196209 Functional Loss - PLPPR1 ENSG00000148123 CDS Human protein_coding chr9:104075205 chr9:104075207 nonsynonymous SNV 0.963 3 23 hm5C_associated_SNPs_61194 0 0 1 0 1 PLPPR1 chr9:104075256 5'GT 104075256 Upstream 50bp
chr10 60562921 60562921 1 + C T COAD 60562919 + 60562899 60562939 41 AGAAGGCTCCAGGGAGTGAGCGCGCTGCAGAGAGGGCAGCA AGAAGGCTCCAGGGAGTGAGCGTGCTGCAGAGAGGGCAGCA < 41bp 0.777497817823272 0.513219407516672 0.46522206 0.65427345 prediction 0.528556820613199 Functional Loss - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60562919 chr10:60562921 synonymous SNV . 0 23 hm5C_associated_SNPs_61195 0 0 1 0 2 BICC1 chr10:60562837 3'AG 60562837 Downstream 85bp
chr10 60562921 60562921 1 + C T COAD 60562919 + 60562899 60562939 41 AGAAGGCTCCAGGGAGTGAGCGCGCTGCAGAGAGGGCAGCA AGAAGGCTCCAGGGAGTGAGCGTGCTGCAGAGAGGGCAGCA < 41bp 0.777497817823272 0.513219407516672 0.46522206 0.65427345 prediction 0.528556820613199 Functional Loss - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60562919 chr10:60562921 synonymous SNV . 0 23 hm5C_associated_SNPs_61195 0 0 1 0 2 BICC1 chr10:60563002 5'GT 60563002 Upstream 82bp
chr21 44427698 44427698 1 + C T UCEC 44427696 + 44427676 44427716 41 CCCCCTGTGGAGTCTCAGACCCCGATGGATGTGGACAAGCA CCCCCTGTGGAGTCTCAGACCCTGATGGATGTGGACAAGCA < 41bp 0.76426903681033 0.487995986198114 0.21426034 0.2206994 prediction 0.52853807362066 Functional Loss - PKNOX1 ENSG00000160199 CDS Human protein_coding chr21:44427696 chr21:44427698 nonsynonymous SNV 0.975 1 23 hm5C_associated_SNPs_61197 0 0 1 0 2 PKNOX1 chr21:44427601 3'AG 44427601 Downstream 98bp
chr21 44427698 44427698 1 + C T UCEC 44427696 + 44427676 44427716 41 CCCCCTGTGGAGTCTCAGACCCCGATGGATGTGGACAAGCA CCCCCTGTGGAGTCTCAGACCCTGATGGATGTGGACAAGCA < 41bp 0.76426903681033 0.487995986198114 0.21426034 0.2206994 prediction 0.52853807362066 Functional Loss - PKNOX1 ENSG00000160199 CDS Human protein_coding chr21:44427696 chr21:44427698 nonsynonymous SNV 0.975 1 23 hm5C_associated_SNPs_61197 0 0 1 0 2 PKNOX1 chr21:44427728 5'GT 44427728 Upstream 31bp
chr12 57922286 57922286 1 + A T SARC 57922282 + 57922262 57922302 41 GCAGCATAATGGGGAGCTGGCTGAAGGGGGTGCTGAGCCCA GCAGCATAATGGGGAGCTGGCTGATGGGGGTGCTGAGCCCA < 41bp 0.764252316223992 0.444737193789285 0.8916732 0.88254 prediction 0.528504632447984 Functional Loss - MBD6 ENSG00000166987 CDS Human protein_coding chr12:57922282 chr12:57922286 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_61201 0 0 1 0 1 MBD6 chr12:57922343 5'GT 57922343 Upstream 58bp
chr22 39411728 39411728 1 + C T SKCM 39411726 + 39411706 39411746 41 ATAAAGCGCCGCTCAGTTGTCTCCTGGAAGACGGGCGTCTT ATAAAGCGCCGCTCAGTTGTCTTCTGGAAGACGGGCGTCTT < 41bp 0.764248910032349 0.4994272517311 0.15213144 0.18483165 prediction 0.528497820064698 Functional Loss - APOBEC3C ENSG00000244509 CDS Human protein_coding chr22:39411726 chr22:39411728 nonsynonymous SNV 0.008 1 23 hm5C_associated_SNPs_61202 0 0 1 0 1 APOBEC3C chr22:39411756 5'GT 39411756 Upstream 29bp
chr11 12883835 12883835 1 + A T OV 12883831 + 12883811 12883851 41 ATAGCCAGATACATCAAACTCAGGACAGGCAAGACGAGGAC ATAGCCAGATACATCAAACTCAGGTCAGGCAAGACGAGGAC < 41bp 0.764246672913841 0.441199871887201 0.74008316 0.37164032 prediction 0.528493345827682 Functional Loss - TEAD1 ENSG00000187079 CDS Human protein_coding chr11:12883831 chr11:12883835 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_61205 0 0 1 0 2 TEAD1 chr11:12883797 3'AG 12883797 Downstream 39bp
chr11 12883835 12883835 1 + A T OV 12883831 + 12883811 12883851 41 ATAGCCAGATACATCAAACTCAGGACAGGCAAGACGAGGAC ATAGCCAGATACATCAAACTCAGGTCAGGCAAGACGAGGAC < 41bp 0.764246672913841 0.441199871887201 0.74008316 0.37164032 prediction 0.528493345827682 Functional Loss - TEAD1 ENSG00000187079 CDS Human protein_coding chr11:12883831 chr11:12883835 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_61205 0 0 1 0 2 TEAD1 chr11:12883861 5'GT 12883861 Upstream 27bp
chr1 153750269 153750269 1 + G C LIHC 153750265 + 153750245 153750285 41 GTGGTGCTGAAATCCAAGTTCTCGGCTGGTCAGTTCTGGGA GTGGTGCTGAAATCCAAGTTCTCGCCTGGTCAGTTCTGGGA < 41bp 0.794304634946483 0.530060689769059 0.24187204 0.116149604 prediction 0.528487890354848 Functional Loss - SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750265 chr1:153750269 nonsynonymous SNV 0.953 4 25 hm5C_associated_SNPs_61207 0 0 0 0 2 SLC27A3 chr1:153750237 3'AG 153750237 Downstream 33bp
chr1 153750269 153750269 1 + G C LIHC 153750265 + 153750245 153750285 41 GTGGTGCTGAAATCCAAGTTCTCGGCTGGTCAGTTCTGGGA GTGGTGCTGAAATCCAAGTTCTCGCCTGGTCAGTTCTGGGA < 41bp 0.794304634946483 0.530060689769059 0.24187204 0.116149604 prediction 0.528487890354848 Functional Loss - SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750265 chr1:153750269 nonsynonymous SNV 0.953 4 25 hm5C_associated_SNPs_61207 0 0 0 0 2 SLC27A3 chr1:153750361 5'GT 153750361 Upstream 93bp
chr17 7558868 7558868 1 + C T SKCM 7558866 + 7558846 7558886 41 GAGATGAAGATGCTGAGAATCTCGGCAACTTCGTCATGTTC GAGATGAAGATGCTGAGAATCTTGGCAACTTCGTCATGTTC < 41bp 0.769018192370622 0.504780250337755 0.19957957 0.11882216 prediction 0.528475884065735 Functional Loss - ATP1B2 ENSG00000129244 CDS Human protein_coding chr17:7558866 chr17:7558868 synonymous SNV . 0 23 hm5C_associated_SNPs_61209 0 0 1 0 2 ATP1B2 chr17:7558845 3'AG 7558845 Downstream 24bp
chr17 7558868 7558868 1 + C T SKCM 7558866 + 7558846 7558886 41 GAGATGAAGATGCTGAGAATCTCGGCAACTTCGTCATGTTC GAGATGAAGATGCTGAGAATCTTGGCAACTTCGTCATGTTC < 41bp 0.769018192370622 0.504780250337755 0.19957957 0.11882216 prediction 0.528475884065735 Functional Loss - ATP1B2 ENSG00000129244 CDS Human protein_coding chr17:7558866 chr17:7558868 synonymous SNV . 0 23 hm5C_associated_SNPs_61209 0 0 1 0 2 ATP1B2 chr17:7558943 5'GT 7558943 Upstream 76bp
chr15 91029315 91029315 1 + C T rs145573380 91029313 + 91029293 91029333 41 CGGAGCACAATGATCCAATCCACGAACTGCTGGACGACCTC CGGAGCACAATGATCCAATCCATGAACTGCTGGACGACCTC < 41bp 0.764234490804386 0.477832995930578 0.11740914 0.06789136 prediction 0.528468981608772 Functional Loss - IQGAP1 ENSG00000140575 CDS Human protein_coding chr15:91029313 chr15:91029315 synonymous SNV . 0 23 hm5C_associated_SNPs_61210 0 0 1 0 2 IQGAP1 chr15:91029262 3'AG 91029262 Downstream 54bp
chr15 91029315 91029315 1 + C T rs145573380 91029313 + 91029293 91029333 41 CGGAGCACAATGATCCAATCCACGAACTGCTGGACGACCTC CGGAGCACAATGATCCAATCCATGAACTGCTGGACGACCTC < 41bp 0.764234490804386 0.477832995930578 0.11740914 0.06789136 prediction 0.528468981608772 Functional Loss - IQGAP1 ENSG00000140575 CDS Human protein_coding chr15:91029313 chr15:91029315 synonymous SNV . 0 23 hm5C_associated_SNPs_61210 0 0 1 0 2 IQGAP1 chr15:91029364 5'GT 91029364 Upstream 50bp
chr17 16285314 16285314 1 + G T UCEC 16285311 + 16285291 16285331 41 GAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCC GAAAATGTGAAGGCCAAGATCCATGATAAGGAAGGCATTCC < 41bp 0.764219576796306 0.37573364483445 0.7986506 0.1935896 prediction 0.528439153592612 Functional Loss - UBB ENSG00000170315 CDS Human protein_coding chr17:16285311 chr17:16285314 nonsynonymous SNV 0.818 0 24 hm5C_associated_SNPs_61212 0 0 1 0 1 UBB chr17:16285216 3'AG 16285216 Downstream 99bp
chr5 7802344 7802344 1 + A T LUSC 7802340 + 7802320 7802360 41 CTCCCAAGCAGGAGCTATACCACCAGTCCTATGACTGCGTC CTCCCAAGCAGGAGCTATACCACCTGTCCTATGACTGCGTC < 41bp 0.764173284002117 0.43522706426953 0.19561055 0.09571463 prediction 0.528346568004234 Functional Loss - ADCY2 ENSG00000078295 CDS Human protein_coding chr5:7802340 chr5:7802344 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_61218 0 0 0 0 1 ADCY2 chr5:7802331 3'AG 7802331 Downstream 14bp
chr4 103422917 103422917 1 + A T rs570219373 103422913 + 103422893 103422933 41 TAGGAGGGAGAGCCCACCCGCGCCAGGAGGCCGAACGCGGA TAGGAGGGAGAGCCCACCCGCGCCTGGAGGCCGAACGCGGA < 41bp 0.821787979316248 0.557619336679883 0.44170967 0.30364704 prediction 0.528337285272731 Functional Loss - LOC105377621 ENSG00000109320 UTR5 Human protein_coding chr4:103422913 chr4:103422917 . . 0 25 hm5C_associated_SNPs_61220 0 0 1 0 1 LOC105377621 chr4:103422945 5'GT 103422945 Upstream 29bp
chr10 106960929 106960929 1 + G T UCEC 106960927 + 106960907 106960947 41 AATATTCAAGAAACGTAAGCCAGGAGCTCAGTGTGCCCTGG AATATTCAAGAAACGTAAGCCATGAGCTCAGTGTGCCCTGG < 41bp 0.764147457971502 0.440304387684322 0.9128803 0.65075874 prediction 0.528294915943004 Functional Loss - SORCS3 ENSG00000156395 CDS Human protein_coding chr10:106960927 chr10:106960929 stopgain 0.999 1 23 hm5C_associated_SNPs_61223 0 0 0 0 2 SORCS3 chr10:106960878 3'AG 106960878 Downstream 52bp
chr10 106960929 106960929 1 + G T UCEC 106960927 + 106960907 106960947 41 AATATTCAAGAAACGTAAGCCAGGAGCTCAGTGTGCCCTGG AATATTCAAGAAACGTAAGCCATGAGCTCAGTGTGCCCTGG < 41bp 0.764147457971502 0.440304387684322 0.9128803 0.65075874 prediction 0.528294915943004 Functional Loss - SORCS3 ENSG00000156395 CDS Human protein_coding chr10:106960927 chr10:106960929 stopgain 0.999 1 23 hm5C_associated_SNPs_61223 0 0 0 0 2 SORCS3 chr10:106961011 5'GT 106961011 Upstream 83bp
chr18 29044158 29044158 1 + C T LUAD 29044156 + 29044136 29044176 41 ATTTCACCAATCAGTTATCTCTCGATACCGAGTTCAGTCAA ATTTCACCAATCAGTTATCTCTTGATACCGAGTTCAGTCAA < 41bp 0.811425731017555 0.547287062656153 0.9166648 0.13235295 prediction 0.528277336722803 Functional Loss - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29044156 chr18:29044158 stopgain 0.235 0 23 hm5C_associated_SNPs_61224 0 0 0 0 1 DSG3 chr18:29044074 3'AG 29044074 Downstream 85bp
chr4 170625244 170625244 1 + C T COAD 170625242 + 170625222 170625262 41 AGCAGCTTGCCTACTATCACCACGACTGGTTTATCTTTAAG AGCAGCTTGCCTACTATCACCATGACTGGTTTATCTTTAAG < 41bp 0.764130524338632 0.49318987900626 0.07502812 0.111505 prediction 0.528261048677263 Functional Loss - CLCN3 ENSG00000109572 CDS Human protein_coding chr4:170625242 chr4:170625244 synonymous SNV . 0 23 hm5C_associated_SNPs_61226 0 0 1 0 2 CLCN3 chr4:170625149 3'AG 170625149 Downstream 96bp
chr4 170625244 170625244 1 + C T COAD 170625242 + 170625222 170625262 41 AGCAGCTTGCCTACTATCACCACGACTGGTTTATCTTTAAG AGCAGCTTGCCTACTATCACCATGACTGGTTTATCTTTAAG < 41bp 0.764130524338632 0.49318987900626 0.07502812 0.111505 prediction 0.528261048677263 Functional Loss - CLCN3 ENSG00000109572 CDS Human protein_coding chr4:170625242 chr4:170625244 synonymous SNV . 0 23 hm5C_associated_SNPs_61226 0 0 1 0 2 CLCN3 chr4:170625335 5'GT 170625335 Upstream 92bp
chr4 170625245 170625245 1 + G T UCEC 170625242 + 170625222 170625262 41 AGCAGCTTGCCTACTATCACCACGACTGGTTTATCTTTAAG AGCAGCTTGCCTACTATCACCACTACTGGTTTATCTTTAAG < 41bp 0.764130524338632 0.396431085659622 0.07502812 0.07196888 prediction 0.528261048677263 Functional Loss - CLCN3 ENSG00000109572 CDS Human protein_coding chr4:170625242 chr4:170625245 nonsynonymous SNV 0.974 2 24 hm5C_associated_SNPs_61227 0 0 1 0 2 CLCN3 chr4:170625149 3'AG 170625149 Downstream 97bp
chr4 170625245 170625245 1 + G T UCEC 170625242 + 170625222 170625262 41 AGCAGCTTGCCTACTATCACCACGACTGGTTTATCTTTAAG AGCAGCTTGCCTACTATCACCACTACTGGTTTATCTTTAAG < 41bp 0.764130524338632 0.396431085659622 0.07502812 0.07196888 prediction 0.528261048677263 Functional Loss - CLCN3 ENSG00000109572 CDS Human protein_coding chr4:170625242 chr4:170625245 nonsynonymous SNV 0.974 2 24 hm5C_associated_SNPs_61227 0 0 1 0 2 CLCN3 chr4:170625335 5'GT 170625335 Upstream 91bp
chr10 12129723 12129723 1 + C T SKCM 12129721 + 12129701 12129741 41 GACAGGCCTTCTGCAGTTCCCTCCAGAGGTAAGGTTACTCG GACAGGCCTTCTGCAGTTCCCTTCAGAGGTAAGGTTACTCG < 41bp 0.764128115409776 0.471879294824426 0.9322041 0.1642322 prediction 0.528256230819552 Functional Loss - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12129721 chr10:12129723 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_61228 0 0 0 0 1 DHTKD1 chr10:12129728 5'GT 12129728 Upstream 6bp
chr1 4832546 4832546 1 + C T BRCA 4832544 + 4832524 4832564 41 TACACCGATGAGACGCTGCACTCGACGACGGGGGAGTACAA TACACCGATGAGACGCTGCACTTGACGACGGGGGAGTACAA < 41bp 0.764115233583369 0.472379270672512 0.09720492 0.038086087 prediction 0.528230467166739 Functional Loss - AJAP1 ENSG00000196581 CDS Human protein_coding chr1:4832544 chr1:4832546 nonsynonymous SNV 0.251 0 23 hm5C_associated_SNPs_61229 0 0 0 0 1 AJAP1 chr1:4832585 5'GT 4832585 Upstream 40bp
chr12 81536919 81536919 1 + G T OV 81536916 + 81536896 81536936 41 CTTTGGCTCCCGGTCGTGACCTTGATTGGGATGAAGAGATG CTTTGGCTCCCGGTCGTGACCTTTATTGGGATGAAGAGATG < 41bp 0.764111463962579 0.381927059341843 0.077833354 0.008312315 prediction 0.528222927925158 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81536916 chr12:81536919 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_61230 0 0 1 0 1 ACSS3 chr12:81536886 3'AG 81536886 Downstream 34bp
chr1 28562758 28562758 1 + G T COAD 28562755 + 28562735 28562775 41 TGTGGGGCGTGAGGACCATGCAAGCCCGAGGCTTCGGCTCG TGTGGGGCGTGAGGACCATGCAATCCCGAGGCTTCGGCTCG < 41bp 0.764108577379811 0.391568976539594 0.5959345 0.19182351 prediction 0.528217154759621 Functional Loss - ATPIF1 ENSG00000130770 CDS Human protein_coding chr1:28562755 chr1:28562758 nonsynonymous SNV 0.278 0 24 hm5C_associated_SNPs_61232 0 0 1 0 1 ATPIF1 chr1:28562781 5'GT 28562781 Upstream 24bp
chr19 4157247 4157247 1 + G T LUAD 4157245 + 4157225 4157265 41 CTCTTGCTCCACCACAACCCCAGGGCCAGTGATCCAAGTAC CTCTTGCTCCACCACAACCCCATGGCCAGTGATCCAAGTAC < 41bp 0.764086806090222 0.409052941900855 0.8666514 0.14993483 prediction 0.528173612180444 Functional Loss - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4157245 chr19:4157247 nonsynonymous SNV 0.001 4 23 hm5C_associated_SNPs_61235 0 0 1 0 1 CREB3L3 chr19:4157292 5'GT 4157292 Upstream 46bp
chr10 23297813 23297813 1 + A C CESC 23297809 + 23297789 23297829 41 AGACAAATCAGAGCCAGCTTCTGGACGAAATACTGTTCTCA AGACAAATCAGAGCCAGCTTCTGGCCGAAATACTGTTCTCA < 41bp 0.764078233138724 0.347066935677442 0.35762382 0.31057292 prediction 0.528156466277447 Functional Loss - ARMC3 ENSG00000165309 CDS Human protein_coding chr10:23297809 chr10:23297813 synonymous SNV . 0 25 hm5C_associated_SNPs_61238 0 0 0 0 3 ARMC3 chr10:23297744 3'AG 23297744 Downstream 70bp
chr10 23297813 23297813 1 + A C CESC 23297809 + 23297789 23297829 41 AGACAAATCAGAGCCAGCTTCTGGACGAAATACTGTTCTCA AGACAAATCAGAGCCAGCTTCTGGCCGAAATACTGTTCTCA < 41bp 0.764078233138724 0.347066935677442 0.35762382 0.31057292 prediction 0.528156466277447 Functional Loss - ARMC3 ENSG00000165309 CDS Human protein_coding chr10:23297809 chr10:23297813 synonymous SNV . 0 25 hm5C_associated_SNPs_61238 0 0 0 0 3 ARMC3 chr10:23297765 3'AG 23297765 Downstream 49bp
chr10 23297813 23297813 1 + A C CESC 23297809 + 23297789 23297829 41 AGACAAATCAGAGCCAGCTTCTGGACGAAATACTGTTCTCA AGACAAATCAGAGCCAGCTTCTGGCCGAAATACTGTTCTCA < 41bp 0.764078233138724 0.347066935677442 0.35762382 0.31057292 prediction 0.528156466277447 Functional Loss - ARMC3 ENSG00000165309 CDS Human protein_coding chr10:23297809 chr10:23297813 synonymous SNV . 0 25 hm5C_associated_SNPs_61238 0 0 0 0 3 ARMC3 chr10:23297860 5'GT 23297860 Upstream 48bp
chrX 105421316 105421316 1 + G T rs149705907 105421314 + 105421294 105421334 41 GGCCAGTATTGGGGGAGGGGCAGCATTTCAAGAGGCTGCAG GGCCAGTATTGGGGGAGGGGCATCATTTCAAGAGGCTGCAG < 41bp 0.85259723323108 0.588520972865789 0.90685177 0.90225524 prediction 0.528152520730582 Functional Loss - MUM1L1 ENSG00000157502 UTR5 Human protein_coding chrX:105421314 chrX:105421316 . . 0 23 hm5C_associated_SNPs_61239 0 0 0 0 2 MUM1L1 chrX:105421217 3'AG 105421217 Downstream 100bp
chrX 105421316 105421316 1 + G T rs149705907 105421314 + 105421294 105421334 41 GGCCAGTATTGGGGGAGGGGCAGCATTTCAAGAGGCTGCAG GGCCAGTATTGGGGGAGGGGCATCATTTCAAGAGGCTGCAG < 41bp 0.85259723323108 0.588520972865789 0.90685177 0.90225524 prediction 0.528152520730582 Functional Loss - MUM1L1 ENSG00000157502 UTR5 Human protein_coding chrX:105421314 chrX:105421316 . . 0 23 hm5C_associated_SNPs_61239 0 0 0 0 2 MUM1L1 chrX:105421352 5'GT 105421352 Upstream 37bp
chr15 22997854 22997854 1 + C T STAD 22997852 + 22997832 22997872 41 TCCTTTCCAGAACATCTTGCCGCGAGTCCATGTGAAAGGTG TCCTTTCCAGAACATCTTGCCGTGAGTCCATGTGAAAGGTG < 41bp 0.790559283657117 0.526487014524066 0.24020952 0.19186255 prediction 0.528144538266102 Functional Loss - CYFIP1 ENSG00000068793 CDS Human other chr15:22997852 chr15:22997854 stopgain . 0 23 hm5C_associated_SNPs_61240 0 0 1 0 2 CYFIP1 chr15:22997797 3'AG 22997797 Downstream 58bp
chr15 22997854 22997854 1 + C T STAD 22997852 + 22997832 22997872 41 TCCTTTCCAGAACATCTTGCCGCGAGTCCATGTGAAAGGTG TCCTTTCCAGAACATCTTGCCGTGAGTCCATGTGAAAGGTG < 41bp 0.790559283657117 0.526487014524066 0.24020952 0.19186255 prediction 0.528144538266102 Functional Loss - CYFIP1 ENSG00000068793 CDS Human other chr15:22997852 chr15:22997854 stopgain . 0 23 hm5C_associated_SNPs_61240 0 0 1 0 2 CYFIP1 chr15:22997869 5'GT 22997869 Upstream 16bp
chr2 220144615 220144615 1 + G T UCEC 220144612 + 220144592 220144632 41 AGTGCGTCCGCTGATGACATCAAGAAGGCGTAAGTGCCTCC AGTGCGTCCGCTGATGACATCAATAAGGCGTAAGTGCCTCC < 41bp 0.764066896348864 0.377135453997155 0.2925135 0.0646362 prediction 0.528133792697728 Functional Loss - DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220144612 chr2:220144615 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_61241 0 0 1 0 2 DNAJB2 chr2:220144520 3'AG 220144520 Downstream 96bp
chr2 220144615 220144615 1 + G T UCEC 220144612 + 220144592 220144632 41 AGTGCGTCCGCTGATGACATCAAGAAGGCGTAAGTGCCTCC AGTGCGTCCGCTGATGACATCAATAAGGCGTAAGTGCCTCC < 41bp 0.764066896348864 0.377135453997155 0.2925135 0.0646362 prediction 0.528133792697728 Functional Loss - DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220144612 chr2:220144615 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_61241 0 0 1 0 2 DNAJB2 chr2:220144620 5'GT 220144620 Upstream 6bp
chr2 228217244 228217244 1 + G C OV 228217240 + 228217220 228217260 41 CCTGCCTTAGACCTGTGTTGCGTGGTGGGTCTGCTGCCGCC CCTGCCTTAGACCTGTGTTGCGTGCTGGGTCTGCTGCCGCC < 41bp 0.76406339235343 0.491533221945871 0.918791 0.38900757 prediction 0.528126784706861 Functional Loss - MFF ENSG00000168958 CDS Human protein_coding chr2:228217240 chr2:228217244 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_61242 0 0 1 0 2 MFF chr2:228217230 3'AG 228217230 Downstream 15bp
chr2 228217244 228217244 1 + G C OV 228217240 + 228217220 228217260 41 CCTGCCTTAGACCTGTGTTGCGTGGTGGGTCTGCTGCCGCC CCTGCCTTAGACCTGTGTTGCGTGCTGGGTCTGCTGCCGCC < 41bp 0.76406339235343 0.491533221945871 0.918791 0.38900757 prediction 0.528126784706861 Functional Loss - MFF ENSG00000168958 CDS Human protein_coding chr2:228217240 chr2:228217244 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_61242 0 0 1 0 2 MFF chr2:228217289 5'GT 228217289 Upstream 46bp
chr4 76489606 76489606 1 + C T SKCM 76489604 + 76489584 76489624 41 TACCTTACTTATAGGTATTTCCCCAGAAGAAGACTCCAGAG TACCTTACTTATAGGTATTTCCTCAGAAGAAGACTCCAGAG < 41bp 0.766793246378206 0.502745549358095 0.056642234 0.04446879 prediction 0.528095394040222 Functional Loss - C4orf26 ENSG00000174792 CDS Human protein_coding chr4:76489604 chr4:76489606 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_61244 0 0 0 0 1 C4orf26 chr4:76489598 3'AG 76489598 Downstream 9bp
chr19 11134277 11134277 1 + G T GBM 11134274 + 11134254 11134294 41 CCCTTCTTGCTCCGACGACTCAAGAAGGAAGTCGAGGCCCA CCCTTCTTGCTCCGACGACTCAATAAGGAAGTCGAGGCCCA < 41bp 0.764039151902384 0.392999668186484 0.28182825 0.059080094 prediction 0.528078303804768 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11134274 chr19:11134277 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_61245 0 0 1 0 2 SMARCA4 chr19:11134194 3'AG 11134194 Downstream 84bp
chr19 11134277 11134277 1 + G T GBM 11134274 + 11134254 11134294 41 CCCTTCTTGCTCCGACGACTCAAGAAGGAAGTCGAGGCCCA CCCTTCTTGCTCCGACGACTCAATAAGGAAGTCGAGGCCCA < 41bp 0.764039151902384 0.392999668186484 0.28182825 0.059080094 prediction 0.528078303804768 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11134274 chr19:11134277 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_61245 0 0 1 0 2 SMARCA4 chr19:11134307 5'GT 11134307 Upstream 31bp
chrX 54578402 54578402 1 + G T HNSC 54578399 + 54578379 54578419 41 GCCAAAGCTGTCCTAGCTGACTGGGTGAGGTGAGGAGGGGG GCCAAAGCTGTCCTAGCTGACTGTGTGAGGTGAGGAGGGGG < 41bp 0.76403663844174 0.375907824172231 0.84295523 0.1793907 prediction 0.528073276883479 Functional Loss - GNL3L ENSG00000130119 CDS Human protein_coding chrX:54578399 chrX:54578402 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_61246 0 0 1 0 1 GNL3L chrX:54578407 5'GT 54578407 Upstream 6bp
chr21 39528417 39528417 1 + A T rs539680301 39528413 + 39528393 39528433 41 TTCAGACAAACCTTGGAAATCAAGAAAGTTCTGGAATGATG TTCAGACAAACCTTGGAAATCAAGTAAGTTCTGGAATGATG < 41bp 0.796388264778151 0.532363234267767 0.27482706 0.35120046 prediction 0.528050061020769 Functional Loss - DSCR8 ENSG00000198054 CDS Human protein_coding chr21:39528413 chr21:39528417 nonsynonymous SNV 0.746 1 25 hm5C_associated_SNPs_61247 0 0 1 2 1 DSCR8 chr21:39528398 3'AG 39528398 Downstream 20bp
chr7 135312778 135312778 1 + C T GBM 135312776 + 135312756 135312796 41 CTACCCCAGTGGATCGCTACCGCCAGATTCTCCTCCCAGCT CTACCCCAGTGGATCGCTACCGTCAGATTCTCCTCCCAGCT < 41bp 0.798118594719025 0.534100476634117 0.8481515 0.49220377 prediction 0.528036236169816 Functional Loss - NUP205 ENSG00000155561 CDS Human protein_coding chr7:135312776 chr7:135312778 synonymous SNV . 0 23 hm5C_associated_SNPs_61248 0 0 1 0 2 NUP205 chr7:135312721 3'AG 135312721 Downstream 58bp
chr7 135312778 135312778 1 + C T GBM 135312776 + 135312756 135312796 41 CTACCCCAGTGGATCGCTACCGCCAGATTCTCCTCCCAGCT CTACCCCAGTGGATCGCTACCGTCAGATTCTCCTCCCAGCT < 41bp 0.798118594719025 0.534100476634117 0.8481515 0.49220377 prediction 0.528036236169816 Functional Loss - NUP205 ENSG00000155561 CDS Human protein_coding chr7:135312776 chr7:135312778 synonymous SNV . 0 23 hm5C_associated_SNPs_61248 0 0 1 0 2 NUP205 chr7:135312859 5'GT 135312859 Upstream 82bp
chr8 48885589 48885589 1 + C T LGG 48885587 + 48885567 48885607 41 CGCGCACAGCACCATCATGCCGCGGCTAAGTGAGGAAGCCA CGCGCACAGCACCATCATGCCGTGGCTAAGTGAGGAAGCCA < 41bp 0.770461988344649 0.506457942812213 0.4173219 0.30978024 prediction 0.528008091064872 Functional Loss - MCM4 ENSG00000104738 CDS Human protein_coding chr8:48885587 chr8:48885589 nonsynonymous SNV 0.025 3 23 hm5C_associated_SNPs_61249 0 0 1 0 1 MCM4 chr8:48885624 5'GT 48885624 Upstream 36bp
chr8 68074105 68074105 1 + C T LUAD 68074103 + 68074083 68074123 41 AGAACAAAATTGCAAGCAAACTCCAAAGACCTCCTTCAGTT AGAACAAAATTGCAAGCAAACTTCAAAGACCTCCTTCAGTT < 41bp 0.763982349094984 0.463386346620521 0.9603877 0.07203674 prediction 0.527964698189968 Functional Loss - CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68074103 chr8:68074105 synonymous SNV . 0 23 hm5C_associated_SNPs_61252 0 0 1 0 2 CSPP1 chr8:68074046 3'AG 68074046 Downstream 60bp
chr8 68074105 68074105 1 + C T LUAD 68074103 + 68074083 68074123 41 AGAACAAAATTGCAAGCAAACTCCAAAGACCTCCTTCAGTT AGAACAAAATTGCAAGCAAACTTCAAAGACCTCCTTCAGTT < 41bp 0.763982349094984 0.463386346620521 0.9603877 0.07203674 prediction 0.527964698189968 Functional Loss - CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68074103 chr8:68074105 synonymous SNV . 0 23 hm5C_associated_SNPs_61252 0 0 1 0 2 CSPP1 chr8:68074150 5'GT 68074150 Upstream 46bp
chr11 68701288 68701288 1 + G T COAD 68701286 + 68701266 68701306 41 CCTCCCAGGTGTGGCTGCCACAGAAGAGACGGGTGTGCCCC CCTCCCAGGTGTGGCTGCCACATAAGAGACGGGTGTGCCCC < 41bp 0.890152770723656 0.626171651312923 0.5628609 0.2977388 prediction 0.527962238821466 Functional Loss - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68701286 chr11:68701288 stopgain 0.124 0 23 hm5C_associated_SNPs_61253 0 0 0 0 2 IGHMBP2 chr11:68701263 3'AG 68701263 Downstream 26bp
chr11 68701288 68701288 1 + G T COAD 68701286 + 68701266 68701306 41 CCTCCCAGGTGTGGCTGCCACAGAAGAGACGGGTGTGCCCC CCTCCCAGGTGTGGCTGCCACATAAGAGACGGGTGTGCCCC < 41bp 0.890152770723656 0.626171651312923 0.5628609 0.2977388 prediction 0.527962238821466 Functional Loss - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68701286 chr11:68701288 stopgain 0.124 0 23 hm5C_associated_SNPs_61253 0 0 0 0 2 IGHMBP2 chr11:68701381 5'GT 68701381 Upstream 94bp
chr21 42824641 42824641 1 + G T UCEC 42824638 + 42824618 42824658 41 TGGAACAGATTGTCTACTGCCAGGACCAGGTATACAGGGGT TGGAACAGATTGTCTACTGCCAGTACCAGGTATACAGGGGT < 41bp 0.763977182726011 0.371325443361084 0.85578203 0.24054223 prediction 0.527954365452022 Functional Loss - MX1 ENSG00000157601 CDS Human protein_coding chr21:42824638 chr21:42824641 nonsynonymous SNV 0.980 4 24 hm5C_associated_SNPs_61255 0 0 0 0 1 MX1 chr21:42824548 3'AG 42824548 Downstream 94bp
chr5 137206399 137206399 1 + G T LUSC 137206396 + 137206376 137206416 41 GTCCCAAAACCCATGTGGCTCCAGATTGCAGCCTCCTGGAC GTCCCAAAACCCATGTGGCTCCATATTGCAGCCTCCTGGAC < 41bp 0.763969440363045 0.385803421278046 0.16472387 0.045357317 prediction 0.527938880726089 Functional Loss - MYOT ENSG00000120729 CDS Human antisense chr5:137206396 chr5:137206399 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_61256 0 0 0 0 1 MYOT chr5:137206340 3'AG 137206340 Downstream 60bp
chr12 72255232 72255232 1 + G T UCEC 72255230 + 72255210 72255250 41 CTTGATAAGTAGTATGTGTCCAGGACTTTATCCATACTCCA CTTGATAAGTAGTATGTGTCCATGACTTTATCCATACTCCA < 41bp 0.763965115265093 0.436526086241783 0.20078936 0.10475248 prediction 0.527930230530186 Functional Loss - TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72255230 chr12:72255232 stopgain 0.460 0 23 hm5C_associated_SNPs_61258 0 0 1 0 2 TBC1D15 chr12:72255185 3'AG 72255185 Downstream 48bp
chr12 72255232 72255232 1 + G T UCEC 72255230 + 72255210 72255250 41 CTTGATAAGTAGTATGTGTCCAGGACTTTATCCATACTCCA CTTGATAAGTAGTATGTGTCCATGACTTTATCCATACTCCA < 41bp 0.763965115265093 0.436526086241783 0.20078936 0.10475248 prediction 0.527930230530186 Functional Loss - TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72255230 chr12:72255232 stopgain 0.460 0 23 hm5C_associated_SNPs_61258 0 0 1 0 2 TBC1D15 chr12:72255276 5'GT 72255276 Upstream 45bp
chr7 130023569 130023569 1 + C T GBM 130023567 + 130023547 130023587 41 ATGCAGCTTTCACCGCCATTCTCGACACCTTGGACATCTTC ATGCAGCTTTCACCGCCATTCTTGACACCTTGGACATCTTC < 41bp 0.803539817534614 0.539597755219934 0.6478673 0.046113193 prediction 0.527884124629359 Functional Loss - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130023567 chr7:130023569 synonymous SNV . 0 23 hm5C_associated_SNPs_61260 0 0 0 0 2 CPA1 chr7:130023525 3'AG 130023525 Downstream 45bp
chr7 130023569 130023569 1 + C T GBM 130023567 + 130023547 130023587 41 ATGCAGCTTTCACCGCCATTCTCGACACCTTGGACATCTTC ATGCAGCTTTCACCGCCATTCTTGACACCTTGGACATCTTC < 41bp 0.803539817534614 0.539597755219934 0.6478673 0.046113193 prediction 0.527884124629359 Functional Loss - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130023567 chr7:130023569 synonymous SNV . 0 23 hm5C_associated_SNPs_61260 0 0 0 0 2 CPA1 chr7:130023635 5'GT 130023635 Upstream 67bp
chr1 33585663 33585663 1 + G T LUSC 33585661 + 33585641 33585681 41 CTAGGGAAGCGCTGCGAAGGCAGCTGATGGCTGCAGAACAG CTAGGGAAGCGCTGCGAAGGCATCTGATGGCTGCAGAACAG < 41bp 0.779151884252387 0.515211310592341 0.33280498 0.12153563 prediction 0.527881147320093 Functional Loss - AZIN2 ENSG00000142920 CDS Human protein_coding chr1:33585661 chr1:33585663 nonsynonymous SNV 0.982 2 23 hm5C_associated_SNPs_61261 0 0 0 1 1 AZIN2 chr1:33585645 3'AG 33585645 Downstream 19bp
chr4 88731888 88731888 1 + G T COAD 88731885 + 88731865 88731905 41 CACGCCTGGCACAGGGTATACAGGGTTAGCTGCAATCCAGC CACGCCTGGCACAGGGTATACAGTGTTAGCTGCAATCCAGC < 41bp 0.912568084897281 0.648630785430325 0.84611315 0.092395544 prediction 0.527874598933911 Functional Loss - IBSP ENSG00000029559 CDS Human protein_coding chr4:88731885 chr4:88731888 nonsynonymous SNV 0.013 2 24 hm5C_associated_SNPs_61262 0 0 0 0 1 IBSP chr4:88731916 5'GT 88731916 Upstream 29bp
chr2 109988100 109988100 1 + G C READ 109988096 + 109988076 109988116 41 AGAACTGGGCGGAAGGCATGCTGGGAGACAAGATCGGGATC AGAACTGGGCGGAAGGCATGCTGGCAGACAAGATCGGGATC < 41bp 0.77077815916287 0.506846118734985 0.69394505 0.4836244 prediction 0.52786408085577 Functional Loss - SH3RF3 ENSG00000172985 CDS Human protein_coding chr2:109988096 chr2:109988100 nonsynonymous SNV 0.991 0 25 hm5C_associated_SNPs_61264 0 0 1 0 2 SH3RF3 chr2:109988042 3'AG 109988042 Downstream 59bp
chr2 109988100 109988100 1 + G C READ 109988096 + 109988076 109988116 41 AGAACTGGGCGGAAGGCATGCTGGGAGACAAGATCGGGATC AGAACTGGGCGGAAGGCATGCTGGCAGACAAGATCGGGATC < 41bp 0.77077815916287 0.506846118734985 0.69394505 0.4836244 prediction 0.52786408085577 Functional Loss - SH3RF3 ENSG00000172985 CDS Human protein_coding chr2:109988096 chr2:109988100 nonsynonymous SNV 0.991 0 25 hm5C_associated_SNPs_61264 0 0 1 0 2 SH3RF3 chr2:109988137 5'GT 109988137 Upstream 38bp
chr6 25972185 25972185 1 + G T LUSC 25972183 + 25972163 25972203 41 GAGGAAGAGAAGTCTTATCTCTGGAGGCTGGAGAAAGAAGA GAGGAAGAGAAGTCTTATCTCTTGAGGCTGGAGAAAGAAGA < 41bp 0.820728284164797 0.55681169465233 0.063981354 0.022919774 prediction 0.527833179024934 Functional Loss - TRIM38 ENSG00000112343 CDS Human protein_coding chr6:25972183 chr6:25972185 nonsynonymous SNV 0.490 2 23 hm5C_associated_SNPs_61270 0 0 1 0 1 TRIM38 chr6:25972097 3'AG 25972097 Downstream 89bp
chr9 92220395 92220395 1 + G T SARC 92220393 + 92220373 92220413 41 ATGAGTTGCTGCTGTCGGCGCAGCGTCAGGGCTGCCTCACT ATGAGTTGCTGCTGTCGGCGCATCGTCAGGGCTGCCTCACT < 41bp 0.763916155062131 0.417224638582963 0.4581515 0.057060182 prediction 0.527832310124263 Functional Loss - GADD45G ENSG00000130222 CDS Human protein_coding chr9:92220393 chr9:92220395 nonsynonymous SNV 0.991 1 23 hm5C_associated_SNPs_61271 0 0 0 0 2 GADD45G chr9:92220347 3'AG 92220347 Downstream 49bp
chr9 92220395 92220395 1 + G T SARC 92220393 + 92220373 92220413 41 ATGAGTTGCTGCTGTCGGCGCAGCGTCAGGGCTGCCTCACT ATGAGTTGCTGCTGTCGGCGCATCGTCAGGGCTGCCTCACT < 41bp 0.763916155062131 0.417224638582963 0.4581515 0.057060182 prediction 0.527832310124263 Functional Loss - GADD45G ENSG00000130222 CDS Human protein_coding chr9:92220393 chr9:92220395 nonsynonymous SNV 0.991 1 23 hm5C_associated_SNPs_61271 0 0 0 0 2 GADD45G chr9:92220448 5'GT 92220448 Upstream 54bp
chr8 121357802 121357802 1 + G T LUSC 121357799 + 121357779 121357819 41 TGCCAGGGACCCCAGGAGAACGAGGTAAGCTGGGCCCCTTC TGCCAGGGACCCCAGGAGAACGATGTAAGCTGGGCCCCTTC < 41bp 0.763915315327107 0.389046103171398 0.94700444 0.9237426 prediction 0.527830630654214 Functional Loss - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121357799 chr8:121357802 nonsynonymous SNV 0.983 5 24 hm5C_associated_SNPs_61272 0 0 0 0 1 COL14A1 chr8:121357802 5'GT 121357802 Upstream 1bp
chr2 136403032 136403032 1 + G T LUAD 136403030 + 136403010 136403050 41 ACCAGTTAGATCCCAAGTGCCTGGACCTCCACAGCCACCTC ACCAGTTAGATCCCAAGTGCCTTGACCTCCACAGCCACCTC < 41bp 0.870902860182287 0.606991244464009 0.050921112 0.016205013 prediction 0.527823231436556 Functional Loss - R3HDM1 ENSG00000048991 CDS Human protein_coding chr2:136403030 chr2:136403032 stopgain 1.000 0 23 hm5C_associated_SNPs_61273 0 0 1 0 2 R3HDM1 chr2:136402949 3'AG 136402949 Downstream 84bp
chr2 136403032 136403032 1 + G T LUAD 136403030 + 136403010 136403050 41 ACCAGTTAGATCCCAAGTGCCTGGACCTCCACAGCCACCTC ACCAGTTAGATCCCAAGTGCCTTGACCTCCACAGCCACCTC < 41bp 0.870902860182287 0.606991244464009 0.050921112 0.016205013 prediction 0.527823231436556 Functional Loss - R3HDM1 ENSG00000048991 CDS Human protein_coding chr2:136403030 chr2:136403032 stopgain 1.000 0 23 hm5C_associated_SNPs_61273 0 0 1 0 2 R3HDM1 chr2:136403097 5'GT 136403097 Upstream 66bp
chr3 44609898 44609898 1 + G T UCEC 44609896 + 44609876 44609916 41 CCTGCAGTGGAACATGATGCCAGAAAATCACCATAGCATGG CCTGCAGTGGAACATGATGCCATAAAATCACCATAGCATGG < 41bp 0.763908585290214 0.426172922831719 0.32907546 0.27177793 prediction 0.527817170580429 Functional Loss - ZKSCAN7 ENSG00000196345;ENSG00000273303 CDS Human other chr3:44609896 chr3:44609898 stopgain 0.000 0 23 hm5C_associated_SNPs_61274 0 0 0 1 2 ZKSCAN7 chr3:44609799 3'AG 44609799 Downstream 100bp
chr3 44609898 44609898 1 + G T UCEC 44609896 + 44609876 44609916 41 CCTGCAGTGGAACATGATGCCAGAAAATCACCATAGCATGG CCTGCAGTGGAACATGATGCCATAAAATCACCATAGCATGG < 41bp 0.763908585290214 0.426172922831719 0.32907546 0.27177793 prediction 0.527817170580429 Functional Loss - ZKSCAN7 ENSG00000196345;ENSG00000273303 CDS Human other chr3:44609896 chr3:44609898 stopgain 0.000 0 23 hm5C_associated_SNPs_61274 0 0 0 1 2 ZKSCAN7 chr3:44609925 5'GT 44609925 Upstream 28bp
chr12 104335647 104335647 1 + A T HNSC 104335643 + 104335623 104335663 41 ATCTCCCCTTGAATGTTTCCCGCGAGACTCTTCAGCAACAT ATCTCCCCTTGAATGTTTCCCGCGTGACTCTTCAGCAACAT < 41bp 0.857578187055038 0.593670307971991 0.058148563 0.03979513 prediction 0.527815758166095 Functional Loss - HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104335643 chr12:104335647 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_61275 0 0 1 0 2 HSP90B1 chr12:104335610 3'AG 104335610 Downstream 38bp
chr12 104335647 104335647 1 + A T HNSC 104335643 + 104335623 104335663 41 ATCTCCCCTTGAATGTTTCCCGCGAGACTCTTCAGCAACAT ATCTCCCCTTGAATGTTTCCCGCGTGACTCTTCAGCAACAT < 41bp 0.857578187055038 0.593670307971991 0.058148563 0.03979513 prediction 0.527815758166095 Functional Loss - HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104335643 chr12:104335647 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_61275 0 0 1 0 2 HSP90B1 chr12:104335675 5'GT 104335675 Upstream 29bp
chrX 53455477 53455477 1 + G T UCEC 53455475 + 53455455 53455495 41 TTCTCTGGGGAAGACCTAGACAGGGACACACGGCTGAGAAT TTCTCTGGGGAAGACCTAGACATGGACACACGGCTGAGAAT < 41bp 0.882376411376416 0.618475276808769 0.90167934 0.28897953 prediction 0.527802269135294 Functional Loss - RIBC1 ENSG00000158423 CDS Human protein_coding chrX:53455475 chrX:53455477 nonsynonymous SNV 0.396 1 23 hm5C_associated_SNPs_61277 0 0 0 0 1 RIBC1 chrX:53455575 5'GT 53455575 Upstream 99bp
chr1 171080040 171080040 1 + C T SKCM 171080038 + 171080018 171080058 41 TCACTCGATTTGGAACCTTCCTCAAGAACAATTTACCGACA TCACTCGATTTGGAACCTTCCTTAAGAACAATTTACCGACA < 41bp 0.763889021833239 0.483289465895712 0.010830402 0.006548047 prediction 0.527778043666478 Functional Loss - FMO3 ENSG00000007933 CDS Human protein_coding chr1:171080038 chr1:171080040 synonymous SNV . 0 23 hm5C_associated_SNPs_61280 0 0 0 0 1 FMO3 chr1:171080138 5'GT 171080138 Upstream 99bp
chr19 804535 804535 1 + G T LUSC 804532 + 804512 804552 41 CACGGCTGTGCCTCCCACAGCGGGCCCAGGCGGCCCTGCAG CACGGCTGTGCCTCCCACAGCGGTCCCAGGCGGCCCTGCAG < 41bp 0.763887471162312 0.35717781280084 0.9107885 0.42297348 prediction 0.527774942324623 Functional Loss - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804532 chr19:804535 nonsynonymous SNV 0.834 1 24 hm5C_associated_SNPs_61281 0 0 1 0 1 PTBP1 chr19:804532 3'AG 804532 Downstream 4bp
chr10 104629931 104629931 1 + G T SKCM 104629928 + 104629908 104629948 41 GGCCGGTCCCCAAGCACATCCGGGAAGCCTTGCAAAATGTA GGCCGGTCCCCAAGCACATCCGGTAAGCCTTGCAAAATGTA < 41bp 0.909415224103444 0.645533161386025 0.8418564 0.23440593 prediction 0.527764125434837 Functional Loss - AS3MT ENSG00000214435 CDS Human protein_coding chr10:104629928 chr10:104629931 stopgain 0.965 0 24 hm5C_associated_SNPs_61283 0 0 0 0 2 AS3MT chr10:104629841 3'AG 104629841 Downstream 91bp
chr10 104629931 104629931 1 + G T SKCM 104629928 + 104629908 104629948 41 GGCCGGTCCCCAAGCACATCCGGGAAGCCTTGCAAAATGTA GGCCGGTCCCCAAGCACATCCGGTAAGCCTTGCAAAATGTA < 41bp 0.909415224103444 0.645533161386025 0.8418564 0.23440593 prediction 0.527764125434837 Functional Loss - AS3MT ENSG00000214435 CDS Human protein_coding chr10:104629928 chr10:104629931 stopgain 0.965 0 24 hm5C_associated_SNPs_61283 0 0 0 0 2 AS3MT chr10:104629968 5'GT 104629968 Upstream 38bp
chr4 122737961 122737961 1 + C T BRCA 122737959 + 122737939 122737979 41 CAGTGCAAAACAAGAAAAAGCACCAAGTAAAAAGCCAGTGA CAGTGCAAAACAAGAAAAAGCATCAAGTAAAAAGCCAGTGA < 41bp 0.763870069169489 0.498089142070692 0.8025647 0.35653988 prediction 0.527740138338977 Functional Loss - EXOSC9 ENSG00000123737 CDS Human protein_coding chr4:122737959 chr4:122737961 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_61286 0 0 1 0 1 EXOSC9 chr4:122737927 3'AG 122737927 Downstream 35bp
chr22 24656954 24656954 1 + G T UCEC 24656952 + 24656932 24656972 41 CTGTGCCGTGCTAGAGTCCTCAGGGAGGGAGTGACCTCGAC CTGTGCCGTGCTAGAGTCCTCATGGAGGGAGTGACCTCGAC < 41bp 0.869552881976179 0.605690218678545 0.902262 0.5511195 prediction 0.527725326595268 Functional Loss - POM121L9P ENSG00000128262 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:24656952 chr22:24656954 . . 0 23 hm5C_associated_SNPs_61287 0 0 0 0 2 POM121L9P chr22:24656876 3'AG 24656876 Downstream 79bp
chr22 24656954 24656954 1 + G T UCEC 24656952 + 24656932 24656972 41 CTGTGCCGTGCTAGAGTCCTCAGGGAGGGAGTGACCTCGAC CTGTGCCGTGCTAGAGTCCTCATGGAGGGAGTGACCTCGAC < 41bp 0.869552881976179 0.605690218678545 0.902262 0.5511195 prediction 0.527725326595268 Functional Loss - POM121L9P ENSG00000128262 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:24656952 chr22:24656954 . . 0 23 hm5C_associated_SNPs_61287 0 0 0 0 2 POM121L9P chr22:24657004 5'GT 24657004 Upstream 51bp
chr4 37848659 37848659 1 + C T UCEC 37848657 + 37848637 37848677 41 GATCGCAGTGCTCTCAAAGACACGTACATGTTGTCCAGCAC GATCGCAGTGCTCTCAAAGACATGTACATGTTGTCCAGCAC < 41bp 0.771735593740057 0.507879044265115 0.1203374 0.12093109 prediction 0.527713098949884 Functional Loss - PGM2 ENSG00000169299 CDS Human protein_coding chr4:37848657 chr4:37848659 nonsynonymous SNV 0.141 1 23 hm5C_associated_SNPs_61288 0 0 1 0 1 PGM2 chr4:37848732 5'GT 37848732 Upstream 74bp
chr11 65111510 65111510 1 + G T LUAD 65111507 + 65111487 65111527 41 AGAAGCTGGATGCTTCCATCCTGGAGGACCGGGATAAGCCC AGAAGCTGGATGCTTCCATCCTGTAGGACCGGGATAAGCCC < 41bp 0.907415927287493 0.643564040351118 0.6992278 0.18892607 prediction 0.52770377387275 Functional Loss - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65111507 chr11:65111510 stopgain 1.000 0 24 hm5C_associated_SNPs_61290 0 0 1 0 1 DPF2 chr11:65111540 5'GT 65111540 Upstream 31bp
chr5 131649388 131649388 1 + G T SARC 131649385 + 131649365 131649405 41 CTGCAGATTTTCTCCATCAGCTGGGAGATGTTCACTGTGTT CTGCAGATTTTCTCCATCAGCTGTGAGATGTTCACTGTGTT < 41bp 0.763842339120693 0.361207664776888 0.71073455 0.21662483 prediction 0.527684678241385 Functional Loss - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131649385 chr5:131649388 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_61291 0 0 0 1 2 SLC22A4 chr5:131649307 3'AG 131649307 Downstream 82bp
chr5 131649388 131649388 1 + G T SARC 131649385 + 131649365 131649405 41 CTGCAGATTTTCTCCATCAGCTGGGAGATGTTCACTGTGTT CTGCAGATTTTCTCCATCAGCTGTGAGATGTTCACTGTGTT < 41bp 0.763842339120693 0.361207664776888 0.71073455 0.21662483 prediction 0.527684678241385 Functional Loss - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131649385 chr5:131649388 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_61291 0 0 0 1 2 SLC22A4 chr5:131649461 5'GT 131649461 Upstream 74bp
chr1 20945011 20945011 1 + G T BLCA 20945008 + 20944988 20945028 41 CGTATATTGTCATGACGGTCCAGGAGCTGCTGCCCTCCTCC CGTATATTGTCATGACGGTCCAGTAGCTGCTGCCCTCCTCC < 41bp 0.909896948462043 0.646054677566642 0.89923805 0.22144991 prediction 0.527684541790803 Functional Loss - CDA ENSG00000158825 CDS Human protein_coding chr1:20945008 chr1:20945011 stopgain 0.901 1 24 hm5C_associated_SNPs_61292 0 0 0 0 1 CDA chr1:20944945 3'AG 20944945 Downstream 67bp
chr17 48618909 48618909 1 + G C rs138924150 48618905 + 48618885 48618925 41 ATGCCCTGGACCTGGGCATACTAGGGGAAGCACTAACCCAG ATGCCCTGGACCTGGGCATACTAGCGGAAGCACTAACCCAG < 41bp 0.813362583569507 0.549528700630434 0.589139 0.15999106 prediction 0.527667765878146 Functional Loss - EPN3 ENSG00000049283 CDS Human protein_coding chr17:48618905 chr17:48618909 nonsynonymous SNV 0.011 0 25 hm5C_associated_SNPs_61293 0 0 0 0 1 EPN3 chr17:48618825 3'AG 48618825 Downstream 85bp
chr2 220098074 220098074 1 + G T COAD 220098071 + 220098051 220098091 41 CGGGCCAAGCGGGGCACAGCCCAGGGGCTTCGGGATGCCCG CGGGCCAAGCGGGGCACAGCCCATGGGCTTCGGGATGCCCG < 41bp 0.763820419364763 0.356505505322091 0.90098596 0.19151756 prediction 0.527640838729526 Functional Loss - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220098071 chr2:220098074 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_61294 0 0 1 0 2 ANKZF1 chr2:220098008 3'AG 220098008 Downstream 67bp
chr2 220098074 220098074 1 + G T COAD 220098071 + 220098051 220098091 41 CGGGCCAAGCGGGGCACAGCCCAGGGGCTTCGGGATGCCCG CGGGCCAAGCGGGGCACAGCCCATGGGCTTCGGGATGCCCG < 41bp 0.763820419364763 0.356505505322091 0.90098596 0.19151756 prediction 0.527640838729526 Functional Loss - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220098071 chr2:220098074 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_61294 0 0 1 0 2 ANKZF1 chr2:220098155 5'GT 220098155 Upstream 82bp
chr3 147130393 147130393 1 + G T SARC 147130390 + 147130370 147130410 41 AAGAAGCACATGCACGTGCACACGAGCGACAAGCCCTATCT AAGAAGCACATGCACGTGCACACTAGCGACAAGCCCTATCT < 41bp 0.90829398449798 0.644475744722699 0.21022674 0.10183284 prediction 0.527636479550563 Functional Loss - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147130390 chr3:147130393 synonymous SNV . 0 24 hm5C_associated_SNPs_61296 0 0 0 0 2 ZIC1 chr3:147130305 3'AG 147130305 Downstream 89bp
chr3 147130393 147130393 1 + G T SARC 147130390 + 147130370 147130410 41 AAGAAGCACATGCACGTGCACACGAGCGACAAGCCCTATCT AAGAAGCACATGCACGTGCACACTAGCGACAAGCCCTATCT < 41bp 0.90829398449798 0.644475744722699 0.21022674 0.10183284 prediction 0.527636479550563 Functional Loss - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147130390 chr3:147130393 synonymous SNV . 0 24 hm5C_associated_SNPs_61296 0 0 0 0 2 ZIC1 chr3:147130468 5'GT 147130468 Upstream 76bp
chr19 42791010 42791010 1 + C T SKCM 42791008 + 42790988 42791028 41 GCACCCAGCCAGCCTGACCCCTCCGTGCAGCCGAGCGAGGC GCACCCAGCCAGCCTGACCCCTTCGTGCAGCCGAGCGAGGC < 41bp 0.770725726784512 0.506909764867928 0.25631016 0.17362571 prediction 0.527631923833167 Functional Loss - CIC ENSG00000079432 CDS Human protein_coding chr19:42791008 chr19:42791010 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_61297 0 0 1 0 1 CIC chr19:42791072 5'GT 42791072 Upstream 63bp
chr19 7831066 7831066 1 + G T UCEC 7831063 + 7831043 7831083 41 CCAAGCAGCAGCAAATCTATCAAGAACTGACCGATTTGAAG CCAAGCAGCAGCAAATCTATCAATAACTGACCGATTTGAAG < 41bp 0.763815284146411 0.389261929165037 0.34327027 0.12768787 prediction 0.527630568292822 Functional Loss - CLEC4M ENSG00000104938 CDS Human protein_coding chr19:7831063 chr19:7831066 stopgain 0.000 0 24 hm5C_associated_SNPs_61298 0 0 0 0 1 CLEC4M chr19:7831093 5'GT 7831093 Upstream 28bp
chr14 23312518 23312518 1 + C T rs150962356 23312516 + 23312496 23312536 41 AGCTGGGCCATGCCCTGGGGCTCGAGCATTCCAGTGACCCC AGCTGGGCCATGCCCTGGGGCTTGAGCATTCCAGTGACCCC < 41bp 0.806609204539014 0.54279632303849 0.031133235 0.024643302 prediction 0.527625763001047 Functional Loss - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23312516 chr14:23312518 synonymous SNV . 0 23 hm5C_associated_SNPs_61300 0 0 0 0 1 MMP14 chr14:23312466 3'AG 23312466 Downstream 53bp
chr1 210012391 210012391 1 + C T UCEC 210012389 + 210012369 210012409 41 AGGGAGAATATGGATCAGATCCCGAGGAGAGACCACCCAAC AGGGAGAATATGGATCAGATCCTGAGGAGAGACCACCCAAC < 41bp 0.791667769477859 0.527859629540632 0.31197262 0.358316 prediction 0.527616279874454 Functional Loss - DIEXF ENSG00000117597 CDS Human protein_coding chr1:210012389 chr1:210012391 synonymous SNV . 0 23 hm5C_associated_SNPs_61301 0 0 1 0 1 DIEXF chr1:210012473 5'GT 210012473 Upstream 83bp
chr16 71663299 71663299 1 + C T BLCA 71663297 + 71663277 71663317 41 CCTTCGGAGAGATATCTGCCCTCGACCCCCAGGCCTGGACG CCTTCGGAGAGATATCTGCCCTTGACCCCCAGGCCTGGACG < 41bp 0.794633210916524 0.53083858279972 0.18430161 0.090970725 prediction 0.527589256233608 Functional Loss - MARVELD3 ENSG00000140832 CDS Human protein_coding chr16:71663297 chr16:71663299 stopgain 0.001 1 23 hm5C_associated_SNPs_61302 0 0 0 0 2 MARVELD3 chr16:71663270 3'AG 71663270 Downstream 30bp
chr16 71663299 71663299 1 + C T BLCA 71663297 + 71663277 71663317 41 CCTTCGGAGAGATATCTGCCCTCGACCCCCAGGCCTGGACG CCTTCGGAGAGATATCTGCCCTTGACCCCCAGGCCTGGACG < 41bp 0.794633210916524 0.53083858279972 0.18430161 0.090970725 prediction 0.527589256233608 Functional Loss - MARVELD3 ENSG00000140832 CDS Human protein_coding chr16:71663297 chr16:71663299 stopgain 0.001 1 23 hm5C_associated_SNPs_61302 0 0 0 0 2 MARVELD3 chr16:71663397 5'GT 71663397 Upstream 99bp
chr11 550143 550143 1 + G T LUSC 550141 + 550121 550161 41 TGCTGGAACAATTGGAGGTGCTGGACCTGGAGGGCAACAGC TGCTGGAACAATTGGAGGTGCTTGACCTGGAGGGCAACAGC < 41bp 0.763788794961946 0.424359582904959 0.8774388 0.5978111 prediction 0.527577589923891 Functional Loss - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:550141 chr11:550143 synonymous SNV . 0 23 hm5C_associated_SNPs_61303 0 0 0 0 1 LRRC56 chr11:550072 3'AG 550072 Downstream 72bp
chr20 36954724 36954724 1 + C T rs5743523 36954722 + 36954702 36954742 41 CCATGTCTCAGCCTCCACCCCGCCACACCTGTCTGTGCAGC CCATGTCTCAGCCTCCACCCCGTCACACCTGTCTGTGCAGC < 41bp 0.780135371916868 0.516348282121276 0.2438209 0.048438936 prediction 0.527574179591183 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36954722 chr20:36954724 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_61304 0 0 0 0 1 BPI chr20:36954667 3'AG 36954667 Downstream 58bp
chr20 3452154 3452154 1 + G C KIRP 3452150 + 3452130 3452170 41 GGCGAGCAATGCCAGCACTGCGGGGGCCGCTTCAGGTGAGT GGCGAGCAATGCCAGCACTGCGGGCGCCGCTTCAGGTGAGT < 41bp 0.777312071340319 0.513535449852622 0.8591583 0.7905522 prediction 0.527553242975395 Functional Loss - ATRN ENSG00000088812 CDS Human protein_coding chr20:3452150 chr20:3452154 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_61307 0 0 1 0 1 ATRN chr20:3452164 5'GT 3452164 Upstream 11bp
chr16 31383063 31383063 1 + C T LUAD 31383061 + 31383041 31383081 41 GTCTGAGCCGAGTCCGAGTCCTCGGGCTGAAGGCACACTGT GTCTGAGCCGAGTCCGAGTCCTTGGGCTGAAGGCACACTGT < 41bp 0.764094936121527 0.500345204722527 0.112068504 0.13357139 prediction 0.527499462798 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31383061 chr16:31383063 synonymous SNV . 0 23 hm5C_associated_SNPs_61312 0 0 0 0 1 ITGAX chr16:31383105 5'GT 31383105 Upstream 43bp
chr9 138453683 138453683 1 + G T SARC 138453681 + 138453661 138453701 41 TGCTCACCCTGGGCGTGGCCCTGGTCTGTGGTGTCCCGGCC TGCTCACCCTGGGCGTGGCCCTTGTCTGTGGTGTCCCGGCC < 41bp 0.763744189599409 0.424193313705188 0.37588087 0.12037721 prediction 0.527488379198819 Functional Loss - PAEP ENSG00000122133 CDS Human protein_coding chr9:138453681 chr9:138453683 synonymous SNV . 0 23 hm5C_associated_SNPs_61313 0 0 0 0 1 PAEP chr9:138453743 5'GT 138453743 Upstream 61bp
chr5 176304658 176304658 1 + G T PCPG 176304656 + 176304636 176304676 41 TGTGGGGAGCCCAGCCCTGACAGCTGGAGCCTGCGCCTCAA TGTGGGGAGCCCAGCCCTGACATCTGGAGCCTGCGCCTCAA < 41bp 0.76374315114733 0.42908957878137 0.47566053 0.27143204 prediction 0.527486302294661 Functional Loss - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176304656 chr5:176304658 nonsynonymous SNV 0.963 2 23 hm5C_associated_SNPs_61314 0 0 0 0 1 UNC5A chr5:176304704 5'GT 176304704 Upstream 47bp
chr15 90768989 90768989 1 + G T ESCA 90768986 + 90768966 90769006 41 GTGGGGACTGCCTCCTCGCCCGGGACCCCTACTGTGCTTGG GTGGGGACTGCCTCCTCGCCCGGTACCCCTACTGTGCTTGG < 41bp 0.914403050111629 0.650673879867381 0.8589196 0.39097655 prediction 0.527458340488496 Functional Loss - SEMA4B ENSG00000185033 CDS Human protein_coding chr15:90768986 chr15:90768989 nonsynonymous SNV 0.446 4 24 hm5C_associated_SNPs_61316 0 0 1 0 2 SEMA4B chr15:90768893 3'AG 90768893 Downstream 97bp
chr15 90768989 90768989 1 + G T ESCA 90768986 + 90768966 90769006 41 GTGGGGACTGCCTCCTCGCCCGGGACCCCTACTGTGCTTGG GTGGGGACTGCCTCCTCGCCCGGTACCCCTACTGTGCTTGG < 41bp 0.914403050111629 0.650673879867381 0.8589196 0.39097655 prediction 0.527458340488496 Functional Loss - SEMA4B ENSG00000185033 CDS Human protein_coding chr15:90768986 chr15:90768989 nonsynonymous SNV 0.446 4 24 hm5C_associated_SNPs_61316 0 0 1 0 2 SEMA4B chr15:90769059 5'GT 90769059 Upstream 71bp
chr4 109088713 109088713 1 - C G rs141061981 109088714 - 109088694 109088734 41 ATCCCGGCCAGCAACGGACACGAGGTGAGCGGGCCGCTGCC ATCCCGGCCAGCAACGGACACCAGGTGAGCGGGCCGCTGCC < 41bp 0.842531373120676 0.578806934976681 0.93396425 0.93179333 prediction 0.527448876287991 Functional Loss - LEF1 ENSG00000138795 CDS Human protein_coding chr4:109088714 chr4:109088713 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_61317 0 0 0 0 1 LEF1 chr4:109088711 5'GT 109088711 Upstream 3bp
chr18 23724589 23724589 1 + G T LUSC 23724586 + 23724566 23724606 41 AAAAATCTGTTGCCAAGCTTCAAGATGAAAGAACTGTGAGG AAAAATCTGTTGCCAAGCTTCAATATGAAAGAACTGTGAGG < 41bp 0.763719014860827 0.396618318211766 0.22607991 0.1040436 prediction 0.527438029721654 Functional Loss - PSMA8 ENSG00000154611 CDS Human protein_coding chr18:23724586 chr18:23724589 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_61318 0 0 0 0 2 PSMA8 chr18:23724523 3'AG 23724523 Downstream 67bp
chr18 23724589 23724589 1 + G T LUSC 23724586 + 23724566 23724606 41 AAAAATCTGTTGCCAAGCTTCAAGATGAAAGAACTGTGAGG AAAAATCTGTTGCCAAGCTTCAATATGAAAGAACTGTGAGG < 41bp 0.763719014860827 0.396618318211766 0.22607991 0.1040436 prediction 0.527438029721654 Functional Loss - PSMA8 ENSG00000154611 CDS Human protein_coding chr18:23724586 chr18:23724589 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_61318 0 0 0 0 2 PSMA8 chr18:23724649 5'GT 23724649 Upstream 61bp
chr11 61545282 61545282 1 + C T UCEC 61545280 + 61545260 61545300 41 AGATACAAGCCCGAGTTCGCCGCCAGCGCGGGCATCGAGGC AGATACAAGCCCGAGTTCGCCGTCAGCGCGGGCATCGAGGC < 41bp 0.763712891310175 0.489263854666863 0.30271754 0.26045722 prediction 0.527425782620349 Functional Loss - MYRF ENSG00000124920 CDS Human protein_coding chr11:61545280 chr11:61545282 nonsynonymous SNV 0.673 1 23 hm5C_associated_SNPs_61319 0 0 1 0 2 MYRF chr11:61545206 3'AG 61545206 Downstream 77bp
chr11 61545282 61545282 1 + C T UCEC 61545280 + 61545260 61545300 41 AGATACAAGCCCGAGTTCGCCGCCAGCGCGGGCATCGAGGC AGATACAAGCCCGAGTTCGCCGTCAGCGCGGGCATCGAGGC < 41bp 0.763712891310175 0.489263854666863 0.30271754 0.26045722 prediction 0.527425782620349 Functional Loss - MYRF ENSG00000124920 CDS Human protein_coding chr11:61545280 chr11:61545282 nonsynonymous SNV 0.673 1 23 hm5C_associated_SNPs_61319 0 0 1 0 2 MYRF chr11:61545317 5'GT 61545317 Upstream 36bp
chr17 40647107 40647107 1 + C T SKCM 40647105 + 40647085 40647125 41 ATTTTATTGATGGGTGTGTTCTCCATGTACACTGGCCTCAT ATTTTATTGATGGGTGTGTTCTTCATGTACACTGGCCTCAT < 41bp 0.815374939648979 0.551666869952209 0.94807947 0.21437109 prediction 0.527416139393541 Functional Loss - ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40647105 chr17:40647107 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_61320 0 0 1 0 2 ATP6V0A1 chr17:40647052 3'AG 40647052 Downstream 56bp
chr17 40647107 40647107 1 + C T SKCM 40647105 + 40647085 40647125 41 ATTTTATTGATGGGTGTGTTCTCCATGTACACTGGCCTCAT ATTTTATTGATGGGTGTGTTCTTCATGTACACTGGCCTCAT < 41bp 0.815374939648979 0.551666869952209 0.94807947 0.21437109 prediction 0.527416139393541 Functional Loss - ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40647105 chr17:40647107 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_61320 0 0 1 0 2 ATP6V0A1 chr17:40647206 5'GT 40647206 Upstream 100bp
chr17 34935839 34935839 1 + A T LUSC 34935835 + 34935815 34935855 41 ATCTTGGTGTTGATGCTTTACGCAAGAGTTTTGAGGTAAGA ATCTTGGTGTTGATGCTTTACGCATGAGTTTTGAGGTAAGA < 41bp 0.763706367707989 0.43633744813045 0.14312536 0.088438034 prediction 0.527412735415977 Functional Loss - GGNBP2 ENSG00000005955 CDS Human other chr17:34935835 chr17:34935839 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_61321 0 0 1 0 1 GGNBP2 chr17:34935849 5'GT 34935849 Upstream 11bp
chr14 24617561 24617561 1 + A C ACC 24617557 + 24617537 24617577 41 GGCAGGAGGAGCCAGATGAGCACCAGGTTGCTACAGTCACA GGCAGGAGGAGCCAGATGAGCACCCGGTTGCTACAGTCACA < 41bp 0.763699939561095 0.34821615010587 0.58453774 0.3910851 prediction 0.527399879122189 Functional Loss - RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617557 chr14:24617561 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_61324 0 0 1 0 2 RNF31 chr14:24617467 3'AG 24617467 Downstream 95bp
chr14 24617561 24617561 1 + A C ACC 24617557 + 24617537 24617577 41 GGCAGGAGGAGCCAGATGAGCACCAGGTTGCTACAGTCACA GGCAGGAGGAGCCAGATGAGCACCCGGTTGCTACAGTCACA < 41bp 0.763699939561095 0.34821615010587 0.58453774 0.3910851 prediction 0.527399879122189 Functional Loss - RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617557 chr14:24617561 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_61324 0 0 1 0 2 RNF31 chr14:24617622 5'GT 24617622 Upstream 62bp
chr13 26273408 26273408 1 + A C COAD 26273404 + 26273384 26273424 41 TGATCATCGATGGCCACACCCTGAAGTACGCGCTCTCCTTC TGATCATCGATGGCCACACCCTGACGTACGCGCTCTCCTTC < 41bp 0.763699405263781 0.384719265189615 0.6085713 0.5205432 prediction 0.527398810527563 Functional Loss - ATP8A2 ENSG00000132932 CDS Human protein_coding chr13:26273404 chr13:26273408 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_61325 0 0 0 0 2 ATP8A2 chr13:26273311 3'AG 26273311 Downstream 98bp
chr13 26273408 26273408 1 + A C COAD 26273404 + 26273384 26273424 41 TGATCATCGATGGCCACACCCTGAAGTACGCGCTCTCCTTC TGATCATCGATGGCCACACCCTGACGTACGCGCTCTCCTTC < 41bp 0.763699405263781 0.384719265189615 0.6085713 0.5205432 prediction 0.527398810527563 Functional Loss - ATP8A2 ENSG00000132932 CDS Human protein_coding chr13:26273404 chr13:26273408 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_61325 0 0 0 0 2 ATP8A2 chr13:26273483 5'GT 26273483 Upstream 76bp
chr8 10159135 10159135 1 + C T UCEC 10159133 + 10159113 10159153 41 TCAAGGTCTTCTGGGAGAATCACGACCCGACCCAAGGTAGA TCAAGGTCTTCTGGGAGAATCATGACCCGACCCAAGGTAGA < 41bp 0.763696826388591 0.496613698575559 0.36300647 0.33937296 prediction 0.527393652777182 Functional Loss - MSRA ENSG00000175806 CDS Human protein_coding chr8:10159133 chr8:10159135 synonymous SNV . 0 23 hm5C_associated_SNPs_61326 0 0 0 0 2 MSRA chr8:10159044 3'AG 10159044 Downstream 92bp
chr8 10159135 10159135 1 + C T UCEC 10159133 + 10159113 10159153 41 TCAAGGTCTTCTGGGAGAATCACGACCCGACCCAAGGTAGA TCAAGGTCTTCTGGGAGAATCATGACCCGACCCAAGGTAGA < 41bp 0.763696826388591 0.496613698575559 0.36300647 0.33937296 prediction 0.527393652777182 Functional Loss - MSRA ENSG00000175806 CDS Human protein_coding chr8:10159133 chr8:10159135 synonymous SNV . 0 23 hm5C_associated_SNPs_61326 0 0 0 0 2 MSRA chr8:10159148 5'GT 10159148 Upstream 14bp
chr20 39986652 39986652 1 + A C ESCA 39986648 + 39986628 39986668 41 GGCCCCATCCTTCTGTCTCCCAGCAGCCTCTTCTCTGCCCT GGCCCCATCCTTCTGTCTCCCAGCCGCCTCTTCTCTGCCCT < 41bp 0.763689863989447 0.346368137382843 0.29964817 0.16926152 prediction 0.527379727978895 Functional Loss - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39986648 chr20:39986652 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_61327 0 0 0 0 1 LPIN3 chr20:39986674 5'GT 39986674 Upstream 23bp
chr16 67679452 67679452 1 + C T LIHC 67679450 + 67679430 67679470 41 TGCCCTTCCACAGGCGAGATCACCAGGTTCCTGTGGCCCAA TGCCCTTCCACAGGCGAGATCATCAGGTTCCTGTGGCCCAA < 41bp 0.769553414118206 0.505863657184584 0.10707539 0.08402941 prediction 0.527379513867243 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67679450 chr16:67679452 nonsynonymous SNV 0.985 0 23 hm5C_associated_SNPs_61328 0 0 0 0 2 CARMIL2 chr16:67679443 3'AG 67679443 Downstream 10bp
chr16 67679452 67679452 1 + C T LIHC 67679450 + 67679430 67679470 41 TGCCCTTCCACAGGCGAGATCACCAGGTTCCTGTGGCCCAA TGCCCTTCCACAGGCGAGATCATCAGGTTCCTGTGGCCCAA < 41bp 0.769553414118206 0.505863657184584 0.10707539 0.08402941 prediction 0.527379513867243 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67679450 chr16:67679452 nonsynonymous SNV 0.985 0 23 hm5C_associated_SNPs_61328 0 0 0 0 2 CARMIL2 chr16:67679534 5'GT 67679534 Upstream 83bp
chr19 47673146 47673146 1 + G T SARC 47673144 + 47673124 47673164 41 GTGAGAAAGCAAAGGCTGCTCTGAAGCGCACGACCTCCGAC GTGAGAAAGCAAAGGCTGCTCTTAAGCGCACGACCTCCGAC < 41bp 0.86756512307563 0.603885217934246 0.22004417 0.18466073 prediction 0.52735981028277 Functional Loss - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47673144 chr19:47673146 synonymous SNV . 0 23 hm5C_associated_SNPs_61330 0 0 1 0 2 SAE1 chr19:47673075 3'AG 47673075 Downstream 72bp
chr19 47673146 47673146 1 + G T SARC 47673144 + 47673124 47673164 41 GTGAGAAAGCAAAGGCTGCTCTGAAGCGCACGACCTCCGAC GTGAGAAAGCAAAGGCTGCTCTTAAGCGCACGACCTCCGAC < 41bp 0.86756512307563 0.603885217934246 0.22004417 0.18466073 prediction 0.52735981028277 Functional Loss - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47673144 chr19:47673146 synonymous SNV . 0 23 hm5C_associated_SNPs_61330 0 0 1 0 2 SAE1 chr19:47673180 5'GT 47673180 Upstream 35bp
chr7 73118101 73118101 1 - G A COAD 73118103 - 73118083 73118123 41 ATGCTGGAGAGTGGGAACCCCGCCATCTTTGCCTCTGGGGT ATGCTGGAGAGTGGGAACCCCGTCATCTTTGCCTCTGGGGT < 41bp 0.780950452740512 0.517290163893527 0.8546759 0.2720003 prediction 0.527320577693969 Functional Loss - STX1A ENSG00000106089 CDS Human protein_coding chr7:73118103 chr7:73118101 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_61332 0 0 0 0 2 STX1A chr7:73118085 5'GT 73118085 Upstream 17bp
chr7 73118101 73118101 1 - G A COAD 73118103 - 73118083 73118123 41 ATGCTGGAGAGTGGGAACCCCGCCATCTTTGCCTCTGGGGT ATGCTGGAGAGTGGGAACCCCGTCATCTTTGCCTCTGGGGT < 41bp 0.780950452740512 0.517290163893527 0.8546759 0.2720003 prediction 0.527320577693969 Functional Loss - STX1A ENSG00000106089 CDS Human protein_coding chr7:73118103 chr7:73118101 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_61332 0 0 0 0 2 STX1A chr7:73118158 3'AG 73118158 Downstream 58bp
chr11 15243085 15243085 1 + G T LUAD 15243083 + 15243063 15243103 41 ACAGCCACTCAGAGGCCACACGGGCTGAGGCTGCGGCTGTG ACAGCCACTCAGAGGCCACACGTGCTGAGGCTGCGGCTGTG < 41bp 0.885468535939109 0.621810491454788 0.8288362 0.3616473 prediction 0.527316088968643 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15243083 chr11:15243085 synonymous SNV . 0 23 hm5C_associated_SNPs_61333 0 0 0 0 1 INSC chr11:15243023 3'AG 15243023 Downstream 63bp
chr5 36686187 36686187 1 + C T UCEC 36686185 + 36686165 36686205 41 AGGGATCGCCTCCGGACCACCACCAACGTACTGGGAGACTC AGGGATCGCCTCCGGACCACCATCAACGTACTGGGAGACTC < 41bp 0.763651398314892 0.491490863070342 0.7588072 0.38240218 prediction 0.527302796629784 Functional Loss - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36686185 chr5:36686187 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_61336 0 0 1 0 1 SLC1A3 chr5:36686167 3'AG 36686167 Downstream 21bp
chr8 9588486 9588486 1 + C T SKCM 9588484 + 9588464 9588504 41 ACTTCGCAGCAGGCTACAACCGCGTGTCTGTTGTAGAGTAC ACTTCGCAGCAGGCTACAACCGTGTGTCTGTTGTAGAGTAC < 41bp 0.773003765617128 0.50935826477257 0.6931753 0.46170378 prediction 0.527291001689116 Functional Loss - TNKS ENSG00000173273 CDS Human protein_coding chr8:9588484 chr8:9588486 synonymous SNV . 0 23 hm5C_associated_SNPs_61338 0 0 1 0 1 TNKS chr8:9588400 3'AG 9588400 Downstream 87bp
chr1 148932853 148932853 1 + G T LUAD 148932851 + 148932831 148932871 41 CTGCCCAGCATGGCTGCATCCAGTACCAAGAGTTGGTGGGA CTGCCCAGCATGGCTGCATCCATTACCAAGAGTTGGTGGGA < 41bp 0.763625715036964 0.41093758120207 0.19035223 0.04147178 prediction 0.527251430073927 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932851 chr1:148932853 . . 0 23 hm5C_associated_SNPs_61341 0 0 1 0 2 LOC645166 chr1:148932786 3'AG 148932786 Downstream 68bp
chr1 148932853 148932853 1 + G T LUAD 148932851 + 148932831 148932871 41 CTGCCCAGCATGGCTGCATCCAGTACCAAGAGTTGGTGGGA CTGCCCAGCATGGCTGCATCCATTACCAAGAGTTGGTGGGA < 41bp 0.763625715036964 0.41093758120207 0.19035223 0.04147178 prediction 0.527251430073927 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932851 chr1:148932853 . . 0 23 hm5C_associated_SNPs_61341 0 0 1 0 2 LOC645166 chr1:148932920 5'GT 148932920 Upstream 68bp
chr12 121666827 121666827 1 + G T LUSC 121666825 + 121666805 121666845 41 CTGGACAGAGCCGCCTCCCTCTGCTTGCCCAGGTACTCCTT CTGGACAGAGCCGCCTCCCTCTTCTTGCCCAGGTACTCCTT < 41bp 0.763622084675684 0.419999308780292 0.36301386 0.10931641 prediction 0.527244169351368 Functional Loss - P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121666825 chr12:121666827 nonsynonymous SNV 0.873 4 23 hm5C_associated_SNPs_61343 0 0 0 0 2 P2RX4 chr12:121666766 3'AG 121666766 Downstream 62bp
chr12 121666827 121666827 1 + G T LUSC 121666825 + 121666805 121666845 41 CTGGACAGAGCCGCCTCCCTCTGCTTGCCCAGGTACTCCTT CTGGACAGAGCCGCCTCCCTCTTCTTGCCCAGGTACTCCTT < 41bp 0.763622084675684 0.419999308780292 0.36301386 0.10931641 prediction 0.527244169351368 Functional Loss - P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121666825 chr12:121666827 nonsynonymous SNV 0.873 4 23 hm5C_associated_SNPs_61343 0 0 0 0 2 P2RX4 chr12:121666902 5'GT 121666902 Upstream 76bp
chr17 4435864 4435864 1 + G T UCEC 4435862 + 4435842 4435882 41 CCCTGTCCTGGGCATGATCACAGGAACACTCATCCTCATTC CCCTGTCCTGGGCATGATCACATGAACACTCATCCTCATTC < 41bp 0.88596037519245 0.622345379727942 0.9267827 0.4329779 prediction 0.527229990929015 Functional Loss - SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4435862 chr17:4435864 stopgain 1.000 1 23 hm5C_associated_SNPs_61346 0 0 0 0 1 SPNS2 chr17:4435837 3'AG 4435837 Downstream 28bp
chr7 100609822 100609822 1 + G T CESC 100609820 + 100609800 100609840 41 CCTAGGTCCTGGGACCAGGACAGGAAATGGTTCGAGACCTG CCTAGGTCCTGGGACCAGGACATGAAATGGTTCGAGACCTG < 41bp 0.867197364127669 0.603587450999887 0.8245336 0.42937338 prediction 0.527219826255565 Functional Loss - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100609820 chr7:100609822 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_61347 0 0 0 0 2 MUC3A chr7:100609805 3'AG 100609805 Downstream 18bp
chr7 100609822 100609822 1 + G T CESC 100609820 + 100609800 100609840 41 CCTAGGTCCTGGGACCAGGACAGGAAATGGTTCGAGACCTG CCTAGGTCCTGGGACCAGGACATGAAATGGTTCGAGACCTG < 41bp 0.867197364127669 0.603587450999887 0.8245336 0.42937338 prediction 0.527219826255565 Functional Loss - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100609820 chr7:100609822 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_61347 0 0 0 0 2 MUC3A chr7:100609896 5'GT 100609896 Upstream 75bp
chr17 53014508 53014508 1 + C T UCEC 53014506 + 53014486 53014526 41 CTGCCCCATCTCAAGATCTCCTCGACCTAAGTCCCAGTCCC CTGCCCCATCTCAAGATCTCCTTGACCTAAGTCCCAGTCCC < 41bp 0.764976243931925 0.501383965274766 0.4739076 0.1441167 prediction 0.527184557314318 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014506 chr17:53014508 synonymous SNV . 0 23 hm5C_associated_SNPs_61351 0 0 1 2 2 TOM1L1 chr17:53014470 3'AG 53014470 Downstream 39bp
chr17 53014508 53014508 1 + C T UCEC 53014506 + 53014486 53014526 41 CTGCCCCATCTCAAGATCTCCTCGACCTAAGTCCCAGTCCC CTGCCCCATCTCAAGATCTCCTTGACCTAAGTCCCAGTCCC < 41bp 0.764976243931925 0.501383965274766 0.4739076 0.1441167 prediction 0.527184557314318 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014506 chr17:53014508 synonymous SNV . 0 23 hm5C_associated_SNPs_61351 0 0 1 2 2 TOM1L1 chr17:53014587 5'GT 53014587 Upstream 80bp
chr1 32669915 32669915 1 + G T BLCA 32669913 + 32669893 32669933 41 AGAGGAAGAGGATGGGGTCACTGAGGGGCTGCCAGAGGAGC AGAGGAAGAGGATGGGGTCACTTAGGGGCTGCCAGAGGAGC < 41bp 0.763591700034768 0.429940907246134 0.76778984 0.757067 prediction 0.527183400069536 Functional Loss - CCDC28B ENSG00000160050 CDS Human protein_coding chr1:32669913 chr1:32669915 stopgain 0.984 1 23 hm5C_associated_SNPs_61352 0 0 1 0 1 CCDC28B chr1:32669980 5'GT 32669980 Upstream 66bp
chr11 112101363 112101363 1 + G C HNSC 112101362 + 112101342 112101382 41 TCTTTAGATTGACCCTGCTACGGGAATGGTTATGAATCTGG TCTTTAGATTGACCCTGCTACCGGAATGGTTATGAATCTGG < 41bp 0.822981247061676 0.559399721662051 0.6189986 0.37748387 prediction 0.527163050799249 Functional Loss - PTS ENSG00000150787 CDS Human protein_coding chr11:112101362 chr11:112101363 synonymous SNV . 0 22 hm5C_associated_SNPs_61353 0 0 1 0 2 PTS chr11:112101349 3'AG 112101349 Downstream 15bp
chr11 112101363 112101363 1 + G C HNSC 112101362 + 112101342 112101382 41 TCTTTAGATTGACCCTGCTACGGGAATGGTTATGAATCTGG TCTTTAGATTGACCCTGCTACCGGAATGGTTATGAATCTGG < 41bp 0.822981247061676 0.559399721662051 0.6189986 0.37748387 prediction 0.527163050799249 Functional Loss - PTS ENSG00000150787 CDS Human protein_coding chr11:112101362 chr11:112101363 synonymous SNV . 0 22 hm5C_associated_SNPs_61353 0 0 1 0 2 PTS chr11:112101405 5'GT 112101405 Upstream 43bp
chr2 219301924 219301924 1 + G T UCEC 219301921 + 219301901 219301941 41 ACCACTGCACAGGAATACCTCAAGACCCATCCCAGCGGGCG ACCACTGCACAGGAATACCTCAATACCCATCCCAGCGGGCG < 41bp 0.763572204376358 0.365946488015558 0.4126402 0.32264525 prediction 0.527144408752715 Functional Loss - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219301921 chr2:219301924 nonsynonymous SNV 0.919 1 24 hm5C_associated_SNPs_61356 0 0 1 0 1 VIL1 chr2:219301847 3'AG 219301847 Downstream 78bp
chr8 134203402 134203402 1 + G T SARC 134203400 + 134203380 134203420 41 GTCCAGGCATGAGGTGGTTCCTGCCCTGGACGCTGGCAGCA GTCCAGGCATGAGGTGGTTCCTTCCCTGGACGCTGGCAGCA < 41bp 0.763571831101649 0.425720406704019 0.11317599 0.06800714 prediction 0.527143662203298 Functional Loss - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134203400 chr8:134203402 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_61357 0 0 0 0 1 WISP1 chr8:134203456 5'GT 134203456 Upstream 55bp
chr22 45132680 45132680 1 + G T BLCA 45132677 + 45132657 45132697 41 CGCCTCCTCCGCCGCTCCCGCTCGGGGGACGTGCTGGCCAA CGCCTCCTCCGCCGCTCCCGCTCTGGGGACGTGCTGGCCAA < 41bp 0.763556947331273 0.371745067402702 0.40382373 0.26797134 prediction 0.527113894662545 Functional Loss - PRR5 ENSG00000186654 CDS Human protein_coding chr22:45132677 chr22:45132680 synonymous SNV . 0 24 hm5C_associated_SNPs_61358 0 0 1 0 1 PRR5 chr22:45132652 3'AG 45132652 Downstream 29bp
chr17 47587860 47587860 1 + C T SKCM 47587858 + 47587838 47587878 41 CACCCAGGAGCCTGAGGCACCTCCAGAACAAGACCTCATAG CACCCAGGAGCCTGAGGCACCTTCAGAACAAGACCTCATAG < 41bp 0.804984154981725 0.541441540459598 0.92906046 0.3735137 prediction 0.527085229044254 Functional Loss - NGFR ENSG00000064300 CDS Human protein_coding chr17:47587858 chr17:47587860 nonsynonymous SNV 0.096 1 23 hm5C_associated_SNPs_61362 0 0 0 0 1 NGFR chr17:47587774 3'AG 47587774 Downstream 87bp
chrX 21995231 21995231 1 + G C TGCT 21995227 + 21995207 21995247 41 ATCGACAGATACTGGCCCACCGCCGACGGGCGCCTGGTTGA ATCGACAGATACTGGCCCACCGCCCACGGGCGCCTGGTTGA < 41bp 0.820742670494258 0.557206407554802 0.089398295 0.05560741 prediction 0.527072525878913 Functional Loss - SMS ENSG00000102172 CDS Human protein_coding chrX:21995227 chrX:21995231 nonsynonymous SNV 0.813 4 25 hm5C_associated_SNPs_61364 0 0 1 0 1 SMS chrX:21995179 3'AG 21995179 Downstream 53bp
chr3 112064109 112064109 1 + C T BLCA 112064107 + 112064087 112064127 41 ACCTTTGGTTTTGGGAAGATCTCAGGAACGGCCTGCCTCAC ACCTTTGGTTTTGGGAAGATCTTAGGAACGGCCTGCCTCAC < 41bp 0.7758421037519 0.512307429913309 0.1578517 0.23017615 prediction 0.527069347677182 Functional Loss - CD200 ENSG00000091972 CDS Human protein_coding chr3:112064107 chr3:112064109 nonsynonymous SNV 0.964 4 23 hm5C_associated_SNPs_61365 0 0 0 0 1 CD200 chr3:112064135 5'GT 112064135 Upstream 27bp
chr16 23200925 23200925 1 + G T rs569006664 23200923 + 23200903 23200943 41 GGGAGGAAGCGGAAAGTCGGCGGTAGCATCATTCACAAGGC GGGAGGAAGCGGAAAGTCGGCGTTAGCATCATTCACAAGGC < 41bp 0.763525071354582 0.41405503749753 0.0931561 0.07705742 prediction 0.527050142709165 Functional Loss - SCNN1G ENSG00000166828 CDS Human protein_coding chr16:23200923 chr16:23200925 nonsynonymous SNV 0.018 2 23 hm5C_associated_SNPs_61366 0 0 0 0 1 SCNN1G chr16:23200992 5'GT 23200992 Upstream 68bp
chrX 107381089 107381089 1 + C T UCEC 107381087 + 107381067 107381107 41 ACACAGCTGGTGACAGGCCTCCCGATTCTTTAACTGCTTCA ACACAGCTGGTGACAGGCCTCCTGATTCTTTAACTGCTTCA < 41bp 0.788482107486169 0.524966266075633 0.32798004 0.28625304 prediction 0.527031682821072 Functional Loss - ATG4A ENSG00000101844 CDS Human protein_coding chrX:107381087 chrX:107381089 synonymous SNV . 0 23 hm5C_associated_SNPs_61367 0 0 1 1 1 ATG4A chrX:107381034 3'AG 107381034 Downstream 56bp
chr19 42352862 42352862 1 + G T UCS 42352860 + 42352840 42352880 41 GCCTGTGCCCTCTGCCCCTGCAGAACTCCTGTGGGCCTCTG GCCTGTGCCCTCTGCCCCTGCATAACTCCTGTGGGCCTCTG < 41bp 0.763506917377706 0.407040610393397 0.06137508 0.047012955 prediction 0.527013834755412 Functional Loss - DMRTC2 ENSG00000142025;ENSG00000142025 exonic;splicing Human protein_coding chr19:42352860 chr19:42352862 stopgain 0.124 0 23 hm5C_associated_SNPs_61370 0 0 0 0 1 DMRTC2 chr19:42352823 3'AG 42352823 Downstream 40bp
chr7 7645667 7645667 1 + C T rs138085974 7645665 + 7645645 7645685 41 CATGGTGTCATAATTGCAGGCACGGTGGACATGCTGGACAT CATGGTGTCATAATTGCAGGCATGGTGGACATGCTGGACAT < 41bp 0.771515794729672 0.508018444368854 0.26980966 0.20417988 prediction 0.526994700721636 Functional Loss - MIOS ENSG00000164654 CDS Human protein_coding chr7:7645665 chr7:7645667 synonymous SNV . 0 23 hm5C_associated_SNPs_61372 0 0 1 0 2 MIOS chr7:7645573 3'AG 7645573 Downstream 95bp
chr7 7645667 7645667 1 + C T rs138085974 7645665 + 7645645 7645685 41 CATGGTGTCATAATTGCAGGCACGGTGGACATGCTGGACAT CATGGTGTCATAATTGCAGGCATGGTGGACATGCTGGACAT < 41bp 0.771515794729672 0.508018444368854 0.26980966 0.20417988 prediction 0.526994700721636 Functional Loss - MIOS ENSG00000164654 CDS Human protein_coding chr7:7645665 chr7:7645667 synonymous SNV . 0 23 hm5C_associated_SNPs_61372 0 0 1 0 2 MIOS chr7:7645702 5'GT 7645702 Upstream 36bp
chr2 239025609 239025609 1 + G C LUAD 239025605 + 239025585 239025625 41 GCGGGATGAAGATGGTTACACGGCGGCAGACCTGGCGGAGT GCGGGATGAAGATGGTTACACGGCCGCAGACCTGGCGGAGT < 41bp 0.763487757723748 0.47297382074441 0.9068752 0.58728 prediction 0.526975515447497 Functional Loss - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239025605 chr2:239025609 synonymous SNV . 0 25 hm5C_associated_SNPs_61374 0 0 0 0 2 ESPNL chr2:239025544 3'AG 239025544 Downstream 66bp
chr2 239025609 239025609 1 + G C LUAD 239025605 + 239025585 239025625 41 GCGGGATGAAGATGGTTACACGGCGGCAGACCTGGCGGAGT GCGGGATGAAGATGGTTACACGGCCGCAGACCTGGCGGAGT < 41bp 0.763487757723748 0.47297382074441 0.9068752 0.58728 prediction 0.526975515447497 Functional Loss - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239025605 chr2:239025609 synonymous SNV . 0 25 hm5C_associated_SNPs_61374 0 0 0 0 2 ESPNL chr2:239025675 5'GT 239025675 Upstream 67bp
chr10 121541174 121541174 1 + G C HNSC 121541173 + 121541153 121541193 41 CATGGTGGCTTATTCTAATTCGGCAGAAAGCATTGGTGGGC CATGGTGGCTTATTCTAATTCCGCAGAAAGCATTGGTGGGC < 41bp 0.841342038595673 0.577855986701912 0.68881387 0.40534568 prediction 0.526972103787522 Functional Loss - INPP5F ENSG00000198825 CDS Human protein_coding chr10:121541173 chr10:121541174 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_61375 0 0 1 0 1 INPP5F chr10:121541147 3'AG 121541147 Downstream 28bp
chr12 122473294 122473294 1 + C T SKCM 122473292 + 122473272 122473312 41 GTGTGGCTCAGAGGTGACCACTCCGGAGAACAGTTCCTCCC GTGTGGCTCAGAGGTGACCACTTCGGAGAACAGTTCCTCCC < 41bp 0.816327417331326 0.552853537615635 0.14722389 0.13940012 prediction 0.526947759431383 Functional Loss - BCL7A ENSG00000110987 CDS Human protein_coding chr12:122473292 chr12:122473294 nonsynonymous SNV 0.960 3 23 hm5C_associated_SNPs_61379 0 0 1 0 2 BCL7A chr12:122473237 3'AG 122473237 Downstream 58bp
chr12 122473294 122473294 1 + C T SKCM 122473292 + 122473272 122473312 41 GTGTGGCTCAGAGGTGACCACTCCGGAGAACAGTTCCTCCC GTGTGGCTCAGAGGTGACCACTTCGGAGAACAGTTCCTCCC < 41bp 0.816327417331326 0.552853537615635 0.14722389 0.13940012 prediction 0.526947759431383 Functional Loss - BCL7A ENSG00000110987 CDS Human protein_coding chr12:122473292 chr12:122473294 nonsynonymous SNV 0.960 3 23 hm5C_associated_SNPs_61379 0 0 1 0 2 BCL7A chr12:122473333 5'GT 122473333 Upstream 40bp
chr2 31489099 31489099 1 + G T STAD 31489097 + 31489077 31489117 41 AGCCGCTGAAGAGCAAGCTGCTGGAGGTAGTGGACGACATG AGCCGCTGAAGAGCAAGCTGCTTGAGGTAGTGGACGACATG < 41bp 0.76346795639534 0.429158737509678 0.43600863 0.26940382 prediction 0.526935912790679 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489097 chr2:31489099 synonymous SNV . 0 23 hm5C_associated_SNPs_61381 0 0 0 0 1 EHD3 chr2:31489043 3'AG 31489043 Downstream 57bp
chr5 167812239 167812239 1 + C T BLCA 167812237 + 167812217 167812257 41 AACCACTCAGATTGAGGATCCTCGAGTACAATGGCGGCGGG AACCACTCAGATTGAGGATCCTTGAGTACAATGGCGGCGGG < 41bp 0.805977248041379 0.542511257932631 0.68587744 0.31094435 prediction 0.526931980217497 Functional Loss - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167812237 chr5:167812239 stopgain 0.317 1 23 hm5C_associated_SNPs_61384 0 0 1 0 1 WWC1 chr5:167812216 3'AG 167812216 Downstream 24bp
chr19 41744449 41744449 1 + C T PRAD 41744447 + 41744427 41744467 41 CTTCGTGCATTGGCAAGAGCCCCGGGCGCCCCTGCAGGGTA CTTCGTGCATTGGCAAGAGCCCTGGGCGCCCCTGCAGGGTA < 41bp 0.763456966471281 0.49416357549232 0.13032123 0.1303457 prediction 0.526913932942562 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41744447 chr19:41744449 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_61386 0 0 0 0 2 AXL chr19:41744375 3'AG 41744375 Downstream 75bp
chr19 41744449 41744449 1 + C T PRAD 41744447 + 41744427 41744467 41 CTTCGTGCATTGGCAAGAGCCCCGGGCGCCCCTGCAGGGTA CTTCGTGCATTGGCAAGAGCCCTGGGCGCCCCTGCAGGGTA < 41bp 0.763456966471281 0.49416357549232 0.13032123 0.1303457 prediction 0.526913932942562 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41744447 chr19:41744449 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_61386 0 0 0 0 2 AXL chr19:41744514 5'GT 41744514 Upstream 66bp
chr4 656323 656323 1 + C T GBM 656321 + 656301 656341 41 GGCAAACTGAAGAGCTACTACACGGACCTGGAGGCCTTCGC GGCAAACTGAAGAGCTACTACATGGACCTGGAGGCCTTCGC < 41bp 0.763450177732938 0.494160345423249 0.9194602 0.9199157 prediction 0.526900355465875 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:656321 chr4:656323 nonsynonymous SNV 0.974 4 23 hm5C_associated_SNPs_61388 0 0 0 0 2 PDE6B chr4:656298 3'AG 656298 Downstream 26bp
chr4 656323 656323 1 + C T GBM 656321 + 656301 656341 41 GGCAAACTGAAGAGCTACTACACGGACCTGGAGGCCTTCGC GGCAAACTGAAGAGCTACTACATGGACCTGGAGGCCTTCGC < 41bp 0.763450177732938 0.494160345423249 0.9194602 0.9199157 prediction 0.526900355465875 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:656321 chr4:656323 nonsynonymous SNV 0.974 4 23 hm5C_associated_SNPs_61388 0 0 0 0 2 PDE6B chr4:656407 5'GT 656407 Upstream 85bp
chr2 74184338 74184338 1 + C T UCEC 74184336 + 74184316 74184356 41 TAGAGCAGCTGCATGGCCAACACGAAGCCTGGCTTATTCAC TAGAGCAGCTGCATGGCCAACATGAAGCCTGGCTTATTCAC < 41bp 0.806082898384028 0.542643408681916 0.09589669 0.07400277 prediction 0.526878979404225 Functional Loss - DGUOK ENSG00000114956 CDS Human protein_coding chr2:74184336 chr2:74184338 synonymous SNV . 0 23 hm5C_associated_SNPs_61391 0 0 1 0 2 DGUOK chr2:74184252 3'AG 74184252 Downstream 87bp
chr2 74184338 74184338 1 + C T UCEC 74184336 + 74184316 74184356 41 TAGAGCAGCTGCATGGCCAACACGAAGCCTGGCTTATTCAC TAGAGCAGCTGCATGGCCAACATGAAGCCTGGCTTATTCAC < 41bp 0.806082898384028 0.542643408681916 0.09589669 0.07400277 prediction 0.526878979404225 Functional Loss - DGUOK ENSG00000114956 CDS Human protein_coding chr2:74184336 chr2:74184338 synonymous SNV . 0 23 hm5C_associated_SNPs_61391 0 0 1 0 2 DGUOK chr2:74184367 5'GT 74184367 Upstream 30bp
chr1 179638503 179638503 1 + G T COAD 179638501 + 179638481 179638521 41 AGCAGCACCCTGTTCAACAACTGCAGTGGATGATTCCGCAG AGCAGCACCCTGTTCAACAACTTCAGTGGATGATTCCGCAG < 41bp 0.860245937325928 0.596812995623406 0.114958614 0.052321345 prediction 0.526865883405045 Functional Loss - TDRD5 ENSG00000162782 CDS Human protein_coding chr1:179638501 chr1:179638503 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_61394 0 0 0 0 1 TDRD5 chr1:179638539 5'GT 179638539 Upstream 37bp
chr15 90802159 90802159 1 + G T ESCA 90802156 + 90802136 90802176 41 CTACCGACAGCCACGAGAATCTAGGTGTGCTAGGTGTCTGG CTACCGACAGCCACGAGAATCTATGTGTGCTAGGTGTCTGG < 41bp 0.763418806963486 0.372093805080848 0.42982683 0.123379886 prediction 0.526837613926972 Functional Loss - TTLL13P ENSG00000213471 CDS Human protein_coding chr15:90802156 chr15:90802159 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_61396 0 0 0 0 1 TTLL13P chr15:90802159 5'GT 90802159 Upstream 1bp
chrX 150841116 150841116 1 + G T UCEC 150841114 + 150841094 150841134 41 AAGATGAAAACTGTGGGCAACAGGAAGATGAGAGTCAAAGG AAGATGAAAACTGTGGGCAACATGAAGATGAGAGTCAAAGG < 41bp 0.76341009239919 0.426930143413109 0.5461556 0.26535755 prediction 0.52682018479838 Functional Loss - PASD1 ENSG00000166049 CDS Human protein_coding chrX:150841114 chrX:150841116 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_61397 0 0 0 0 1 PASD1 chrX:150841133 5'GT 150841133 Upstream 18bp
chr19 18468380 18468380 1 + C T BLCA 18468378 + 18468358 18468398 41 GCTGTGTGCAAGCGAGTCACCACGTTGGGCCTGGATGTGTC GCTGTGTGCAAGCGAGTCACCATGTTGGGCCTGGATGTGTC < 41bp 0.763405358117946 0.495836699630685 0.02901426 0.046314895 prediction 0.526810716235892 Functional Loss - PGPEP1 ENSG00000130517 CDS Human protein_coding chr19:18468378 chr19:18468380 nonsynonymous SNV 0.845 0 23 hm5C_associated_SNPs_61400 0 0 1 0 1 PGPEP1 chr19:18468425 5'GT 18468425 Upstream 46bp
chr12 109509480 109509480 1 + C T HNSC 109509478 + 109509458 109509498 41 AGATGAGCGAGACCGCCAGCCTCGGGTCACACATTTGTTTG AGATGAGCGAGACCGCCAGCCTTGGGTCACACATTTGTTTG < 41bp 0.793751016076858 0.530350066653326 0.16816452 0.17665845 prediction 0.526801898847063 Functional Loss - USP30 ENSG00000135093 CDS Human protein_coding chr12:109509478 chr12:109509480 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_61401 0 0 0 0 2 USP30 chr12:109509417 3'AG 109509417 Downstream 64bp
chr12 109509480 109509480 1 + C T HNSC 109509478 + 109509458 109509498 41 AGATGAGCGAGACCGCCAGCCTCGGGTCACACATTTGTTTG AGATGAGCGAGACCGCCAGCCTTGGGTCACACATTTGTTTG < 41bp 0.793751016076858 0.530350066653326 0.16816452 0.17665845 prediction 0.526801898847063 Functional Loss - USP30 ENSG00000135093 CDS Human protein_coding chr12:109509478 chr12:109509480 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_61401 0 0 0 0 2 USP30 chr12:109509515 5'GT 109509515 Upstream 36bp
chrX 117700568 117700568 1 + G T UCEC 117700565 + 117700545 117700585 41 ACTAGCAGCCAAGGAAAAGCCGAGAACATCATGGCAAGTTT ACTAGCAGCCAAGGAAAAGCCGATAACATCATGGCAAGTTT < 41bp 0.763398809545919 0.406768094474768 0.35766453 0.15311807 prediction 0.526797619091838 Functional Loss - DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117700565 chrX:117700568 nonsynonymous SNV 0.957 1 24 hm5C_associated_SNPs_61402 0 0 1 0 2 DOCK11 chrX:117700537 3'AG 117700537 Downstream 32bp
chrX 117700568 117700568 1 + G T UCEC 117700565 + 117700545 117700585 41 ACTAGCAGCCAAGGAAAAGCCGAGAACATCATGGCAAGTTT ACTAGCAGCCAAGGAAAAGCCGATAACATCATGGCAAGTTT < 41bp 0.763398809545919 0.406768094474768 0.35766453 0.15311807 prediction 0.526797619091838 Functional Loss - DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117700565 chrX:117700568 nonsynonymous SNV 0.957 1 24 hm5C_associated_SNPs_61402 0 0 1 0 2 DOCK11 chrX:117700616 5'GT 117700616 Upstream 49bp
chr19 56160591 56160591 1 + G C BLCA 56160590 + 56160570 56160610 41 GTGAAGGACGATGAGACCTTCGAGATCTCCATTCCCTTCGA GTGAAGGACGATGAGACCTTCCAGATCTCCATTCCCTTCGA < 41bp 0.847870341685966 0.584484693072106 0.118133545 0.032970935 prediction 0.526771297227719 Functional Loss - CCDC106 ENSG00000173581 CDS Human protein_coding chr19:56160590 chr19:56160591 nonsynonymous SNV 0.971 2 22 hm5C_associated_SNPs_61403 0 0 0 0 1 CCDC106 chr19:56160571 3'AG 56160571 Downstream 21bp
chr16 31122082 31122082 1 + G T THCA 31122080 + 31122060 31122100 41 GAGAAGTGGGTGGACTTTGCCAGGTGAGGCAAGAATGGCTC GAGAAGTGGGTGGACTTTGCCATGTGAGGCAAGAATGGCTC < 41bp 0.763371453986377 0.422294772971672 0.90372527 0.728912 prediction 0.526742907972753 Functional Loss - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31122080 chr16:31122082 nonsynonymous SNV 0.986 3 23 hm5C_associated_SNPs_61407 0 0 1 0 2 BCKDK chr16:31122009 3'AG 31122009 Downstream 74bp
chr16 31122082 31122082 1 + G T THCA 31122080 + 31122060 31122100 41 GAGAAGTGGGTGGACTTTGCCAGGTGAGGCAAGAATGGCTC GAGAAGTGGGTGGACTTTGCCATGTGAGGCAAGAATGGCTC < 41bp 0.763371453986377 0.422294772971672 0.90372527 0.728912 prediction 0.526742907972753 Functional Loss - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31122080 chr16:31122082 nonsynonymous SNV 0.986 3 23 hm5C_associated_SNPs_61407 0 0 1 0 2 BCKDK chr16:31122082 5'GT 31122082 Upstream 1bp
chr6 44102451 44102451 1 + G C SKCM 44102447 + 44102427 44102467 41 CTGCCCTTTGGGGGCGTCCCCACCGTGCTGGCTCTCGACTT CTGCCCTTTGGGGGCGTCCCCACCCTGCTGGCTCTCGACTT < 41bp 0.763366055517873 0.48322387883085 0.24492535 0.15261146 prediction 0.526732111035746 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44102447 chr6:44102451 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_61408 0 0 1 0 1 TMEM63B chr6:44102480 5'GT 44102480 Upstream 30bp
chrX 2779704 2779704 1 + G T LUSC 2779701 + 2779681 2779721 41 ACCAGCCTGCTCAGGGCCTTCCGGAGCCGACCCAGATAGTG ACCAGCCTGCTCAGGGCCTTCCGTAGCCGACCCAGATAGTG < 41bp 0.763356134255846 0.374881074687712 0.8777058 0.2904374 prediction 0.526712268511692 Functional Loss - GYG2 ENSG00000056998 CDS Human protein_coding chrX:2779701 chrX:2779704 stopgain 0.001 0 24 hm5C_associated_SNPs_61410 0 0 1 0 1 GYG2 chrX:2779763 5'GT 2779763 Upstream 60bp
chr11 64023034 64023034 1 + A T LIHC 64023030 + 64023010 64023050 41 CAGCATCCTGAAGATGTTCTCAGCAGACAAGAAGCGGGTGG CAGCATCCTGAAGATGTTCTCAGCTGACAAGAAGCGGGTGG < 41bp 0.763352199881301 0.455268070188973 0.6382363 0.57559353 prediction 0.526704399762601 Functional Loss - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64023030 chr11:64023034 synonymous SNV . 0 25 hm5C_associated_SNPs_61411 0 0 1 0 2 PLCB3 chr11:64023013 3'AG 64023013 Downstream 22bp
chr11 64023034 64023034 1 + A T LIHC 64023030 + 64023010 64023050 41 CAGCATCCTGAAGATGTTCTCAGCAGACAAGAAGCGGGTGG CAGCATCCTGAAGATGTTCTCAGCTGACAAGAAGCGGGTGG < 41bp 0.763352199881301 0.455268070188973 0.6382363 0.57559353 prediction 0.526704399762601 Functional Loss - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64023030 chr11:64023034 synonymous SNV . 0 25 hm5C_associated_SNPs_61411 0 0 1 0 2 PLCB3 chr11:64023088 5'GT 64023088 Upstream 55bp
chr22 45929694 45929694 1 + A C rs140981949 45929690 + 45929670 45929710 41 AGCTGCCGGCTTGGAGAATCCTGCATCAACACAGTGGGCTC AGCTGCCGGCTTGGAGAATCCTGCCTCAACACAGTGGGCTC < 41bp 0.928660703381613 0.665310942608932 0.4913226 0.15698189 prediction 0.526699521545363 Functional Loss - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45929690 chr22:45929694 nonsynonymous SNV 0.859 1 25 hm5C_associated_SNPs_61412 0 0 0 0 2 FBLN1 chr22:45929641 3'AG 45929641 Downstream 54bp
chr22 45929694 45929694 1 + A C rs140981949 45929690 + 45929670 45929710 41 AGCTGCCGGCTTGGAGAATCCTGCATCAACACAGTGGGCTC AGCTGCCGGCTTGGAGAATCCTGCCTCAACACAGTGGGCTC < 41bp 0.928660703381613 0.665310942608932 0.4913226 0.15698189 prediction 0.526699521545363 Functional Loss - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45929690 chr22:45929694 nonsynonymous SNV 0.859 1 25 hm5C_associated_SNPs_61412 0 0 0 0 2 FBLN1 chr22:45929778 5'GT 45929778 Upstream 85bp
chr6 50712840 50712840 1 + C T GBM 50712838 + 50712818 50712858 41 AGGGGAGGCTTTGCACTTGGCTCGGGATTTTGGCTACACTT AGGGGAGGCTTTGCACTTGGCTTGGGATTTTGGCTACACTT < 41bp 0.764056244938032 0.500706921587422 0.09564692 0.17709413 prediction 0.526698646701218 Functional Loss - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50712838 chr6:50712840 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_61413 0 0 0 3 1 TFAP2D chr6:50712820 3'AG 50712820 Downstream 21bp
chr10 98711924 98711924 1 + T C rs139119919 98711923 + 98711903 98711943 41 CAGCACTTCCCTGAGCCACTCTCCAGGCTGCTCCAGTACTC CAGCACTTCCCTGAGCCACTCCCCAGGCTGCTCCAGTACTC < 41bp 0.763341916566201 0.499519647696625 0.91126454 0.18543163 prediction 0.526683833132402 Functional Loss - LCOR ENSG00000196233 CDS Human protein_coding chr10:98711923 chr10:98711924 synonymous SNV . 0 22 hm5C_associated_SNPs_61415 0 0 1 0 2 LCOR chr10:98711860 3'AG 98711860 Downstream 65bp
chr10 98711924 98711924 1 + T C rs139119919 98711923 + 98711903 98711943 41 CAGCACTTCCCTGAGCCACTCTCCAGGCTGCTCCAGTACTC CAGCACTTCCCTGAGCCACTCCCCAGGCTGCTCCAGTACTC < 41bp 0.763341916566201 0.499519647696625 0.91126454 0.18543163 prediction 0.526683833132402 Functional Loss - LCOR ENSG00000196233 CDS Human protein_coding chr10:98711923 chr10:98711924 synonymous SNV . 0 22 hm5C_associated_SNPs_61415 0 0 1 0 2 LCOR chr10:98711953 5'GT 98711953 Upstream 30bp
chr17 72363805 72363805 1 + G T LUAD 72363803 + 72363783 72363823 41 CATTCTTGTCTCAGCCATTCCAGGTGGCTGAGGTCTCCACA CATTCTTGTCTCAGCCATTCCATGTGGCTGAGGTCTCCACA < 41bp 0.763337242872995 0.415337083521142 0.8711643 0.4455095 prediction 0.52667448574599 Functional Loss - GPR142 ENSG00000257008 CDS Human protein_coding chr17:72363803 chr17:72363805 nonsynonymous SNV 0.011 1 23 hm5C_associated_SNPs_61416 0 0 0 0 1 GPR142 chr17:72363887 5'GT 72363887 Upstream 83bp
chr6 32138255 32138255 1 - C A BLCA 32138257 - 32138237 32138277 41 CTTCATCGACCGGAAGCGCACGGGGGATGCCATCAGTGTCA CTTCATCGACCGGAAGCGCACGTGGGATGCCATCAGTGTCA < 41bp 0.771311287612788 0.507983891247394 0.93653077 0.4866266 prediction 0.526654792730789 Functional Loss - AGPAT1 ENSG00000204310 CDS Human protein_coding chr6:32138257 chr6:32138255 nonsynonymous SNV 0.987 5 23 hm5C_associated_SNPs_61418 0 0 1 0 1 AGPAT1 chr6:32138202 5'GT 32138202 Upstream 54bp
chr19 49459574 49459574 1 + G T LUAD 49459572 + 49459552 49459592 41 GTCGCCCTTTTCTACTTTGCCAGCAAACTGGTGCTCAAGGT GTCGCCCTTTTCTACTTTGCCATCAAACTGGTGCTCAAGGT < 41bp 0.763325269544736 0.436643694307065 0.34972203 0.16279513 prediction 0.526650539089472 Functional Loss - BAX ENSG00000087088 CDS Human protein_coding chr19:49459572 chr19:49459574 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_61420 0 0 1 3 1 BAX chr19:49459590 5'GT 49459590 Upstream 17bp
chr3 180686015 180686015 1 + C T ESCA 180686013 + 180685993 180686033 41 GGGTCGAGGTCGTGGTGGACCACGTGGTGGCAAATCCTCCA GGGTCGAGGTCGTGGTGGACCATGTGGTGGCAAATCCTCCA < 41bp 0.772468807882873 0.509144451232268 0.34856537 0.27021927 prediction 0.52664871330121 Functional Loss - FXR1 ENSG00000114416 CDS Human protein_coding chr3:180686013 chr3:180686015 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_61422 0 0 1 0 1 FXR1 chr3:180686042 5'GT 180686042 Upstream 28bp
chr10 94109496 94109496 1 + C T UCEC 94109494 + 94109474 94109514 41 AGCAGATCATGTCTCTGCTACTCGAATCTTGTGTGGAGCCC AGCAGATCATGTCTCTGCTACTTGAATCTTGTGTGGAGCCC < 41bp 0.822339413159267 0.559020228849165 0.7926185 0.09892213 prediction 0.526638368620202 Functional Loss - MARCH5 ENSG00000198060 CDS Human protein_coding chr10:94109494 chr10:94109496 stopgain 0.997 1 23 hm5C_associated_SNPs_61423 0 0 1 0 2 MARCH5 chr10:94109428 3'AG 94109428 Downstream 69bp
chr10 94109496 94109496 1 + C T UCEC 94109494 + 94109474 94109514 41 AGCAGATCATGTCTCTGCTACTCGAATCTTGTGTGGAGCCC AGCAGATCATGTCTCTGCTACTTGAATCTTGTGTGGAGCCC < 41bp 0.822339413159267 0.559020228849165 0.7926185 0.09892213 prediction 0.526638368620202 Functional Loss - MARCH5 ENSG00000198060 CDS Human protein_coding chr10:94109494 chr10:94109496 stopgain 0.997 1 23 hm5C_associated_SNPs_61423 0 0 1 0 2 MARCH5 chr10:94109594 5'GT 94109594 Upstream 99bp
chr10 94396952 94396952 1 + G T UCEC 94396949 + 94396929 94396969 41 TTCTGAAACCAGAATGTACTCAAGACTGATCTTCTAAGTTC TTCTGAAACCAGAATGTACTCAATACTGATCTTCTAAGTTC < 41bp 0.76329035441947 0.403847961749824 0.25735247 0.08789542 prediction 0.526580708838939 Functional Loss - KIF11 ENSG00000138160 CDS Human protein_coding chr10:94396949 chr10:94396952 nonsynonymous SNV 0.967 0 24 hm5C_associated_SNPs_61426 0 0 1 0 1 KIF11 chr10:94396941 3'AG 94396941 Downstream 12bp
chr8 22862018 22862018 1 + C T SKCM 22862016 + 22861996 22862036 41 TGCGTTGTGGTGGGGGACAACGCCGTGGGTAAGACCAGGCT TGCGTTGTGGTGGGGGACAACGTCGTGGGTAAGACCAGGCT < 41bp 0.781909238436228 0.518622249071234 0.77373236 0.3466798 prediction 0.526573978729988 Functional Loss - RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22862016 chr8:22862018 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_61427 0 0 0 0 1 RHOBTB2 chr8:22861938 3'AG 22861938 Downstream 81bp
chr4 17528502 17528502 1 + G T LUAD 17528500 + 17528480 17528520 41 GGTGAAATTTCACGACCTGACGGAACGAATCGCCAACTTTC GGTGAAATTTCACGACCTGACGTAACGAATCGCCAACTTTC < 41bp 0.872914453266247 0.609632939189575 0.26278716 0.07295936 prediction 0.526563028153344 Functional Loss - CLRN2 ENSG00000249581 CDS Human protein_coding chr4:17528500 chr4:17528502 stopgain 0.231 1 23 hm5C_associated_SNPs_61430 0 0 0 0 1 CLRN2 chr4:17528440 3'AG 17528440 Downstream 63bp
chr14 96010321 96010321 1 + A T LUSC 96010317 + 96010297 96010337 41 TTCCAACTGGCCCACCATCCCGCAAGTGTACCTCAATGGCG TTCCAACTGGCCCACCATCCCGCATGTGTACCTCAATGGCG < 41bp 0.856355555300069 0.59309663858825 0.041784465 0.008539289 prediction 0.526517833423638 Functional Loss - GLRX5 ENSG00000182512 CDS Human protein_coding chr14:96010317 chr14:96010321 nonsynonymous SNV 0.944 4 25 hm5C_associated_SNPs_61434 0 0 1 0 1 GLRX5 chr14:96010284 3'AG 96010284 Downstream 38bp
chr10 5493826 5493826 1 + C T STAD 5493824 + 5493804 5493844 41 TAAAAGAGTTCGACCTCTGGCTCGTGTCACGTCCTTGGCAA TAAAAGAGTTCGACCTCTGGCTTGTGTCACGTCCTTGGCAA < 41bp 0.763258560751999 0.483596915691448 0.050006628 0.04846075 prediction 0.526517121503999 Functional Loss - NET1 ENSG00000173848 CDS Human protein_coding chr10:5493824 chr10:5493826 nonsynonymous SNV 0.992 3 23 hm5C_associated_SNPs_61435 0 0 1 0 2 NET1 chr10:5493793 3'AG 5493793 Downstream 34bp
chr10 5493826 5493826 1 + C T STAD 5493824 + 5493804 5493844 41 TAAAAGAGTTCGACCTCTGGCTCGTGTCACGTCCTTGGCAA TAAAAGAGTTCGACCTCTGGCTTGTGTCACGTCCTTGGCAA < 41bp 0.763258560751999 0.483596915691448 0.050006628 0.04846075 prediction 0.526517121503999 Functional Loss - NET1 ENSG00000173848 CDS Human protein_coding chr10:5493824 chr10:5493826 nonsynonymous SNV 0.992 3 23 hm5C_associated_SNPs_61435 0 0 1 0 2 NET1 chr10:5493900 5'GT 5493900 Upstream 75bp
chr3 160945052 160945052 1 + G T OV 160945049 + 160945029 160945069 41 TTTTAGGTATTTTCAACCACCAGGAACTTGGATACAGTGTG TTTTAGGTATTTTCAACCACCAGTAACTTGGATACAGTGTG < 41bp 0.763254126538716 0.391537380260106 0.6255867 0.2736277 prediction 0.526508253077433 Functional Loss - NMD3 ENSG00000169251 CDS Human protein_coding chr3:160945049 chr3:160945052 nonsynonymous SNV 0.993 0 24 hm5C_associated_SNPs_61436 0 0 1 0 2 NMD3 chr3:160945035 3'AG 160945035 Downstream 18bp
chr3 160945052 160945052 1 + G T OV 160945049 + 160945029 160945069 41 TTTTAGGTATTTTCAACCACCAGGAACTTGGATACAGTGTG TTTTAGGTATTTTCAACCACCAGTAACTTGGATACAGTGTG < 41bp 0.763254126538716 0.391537380260106 0.6255867 0.2736277 prediction 0.526508253077433 Functional Loss - NMD3 ENSG00000169251 CDS Human protein_coding chr3:160945049 chr3:160945052 nonsynonymous SNV 0.993 0 24 hm5C_associated_SNPs_61436 0 0 1 0 2 NMD3 chr3:160945131 5'GT 160945131 Upstream 80bp
chr4 37440978 37440978 1 + G T UCEC 37440975 + 37440955 37440995 41 TATATATGGTGGGCCATGCACTGGGAAGACCCTTCTGCTAG TATATATGGTGGGCCATGCACTGTGAAGACCCTTCTGCTAG < 41bp 0.763240144752325 0.390939625929438 0.81101817 0.15922776 prediction 0.526480289504651 Functional Loss - NWD2 ENSG00000174145 CDS Human protein_coding chr4:37440975 chr4:37440978 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_61437 0 0 0 0 1 NWD2 chr4:37441012 5'GT 37441012 Upstream 35bp
chr1 227954727 227954727 1 + G T LUAD 227954725 + 227954705 227954745 41 GAGACCAGGAGGGCACAGCACTGCACCTGCAGACAAGCCTG GAGACCAGGAGGGCACAGCACTTCACCTGCAGACAAGCCTG < 41bp 0.872084482760819 0.608850284097405 0.18560627 0.13123292 prediction 0.526468397326827 Functional Loss - SNAP47 ENSG00000143740 CDS Human protein_coding chr1:227954725 chr1:227954727 synonymous SNV . 0 23 hm5C_associated_SNPs_61439 0 0 1 0 2 SNAP47 chr1:227954660 3'AG 227954660 Downstream 68bp
chr1 227954727 227954727 1 + G T LUAD 227954725 + 227954705 227954745 41 GAGACCAGGAGGGCACAGCACTGCACCTGCAGACAAGCCTG GAGACCAGGAGGGCACAGCACTTCACCTGCAGACAAGCCTG < 41bp 0.872084482760819 0.608850284097405 0.18560627 0.13123292 prediction 0.526468397326827 Functional Loss - SNAP47 ENSG00000143740 CDS Human protein_coding chr1:227954725 chr1:227954727 synonymous SNV . 0 23 hm5C_associated_SNPs_61439 0 0 1 0 2 SNAP47 chr1:227954784 5'GT 227954784 Upstream 58bp
chr20 368924 368924 1 + A T LUSC 368920 + 368900 368940 41 CTACCAGGCCCTGCACTGCCCTACAGGCACTGAGTATACCT CTACCAGGCCCTGCACTGCCCTACTGGCACTGAGTATACCT < 41bp 0.763226865626002 0.436756850884325 0.84204096 0.14649215 prediction 0.526453731252004 Functional Loss - TRIB3 ENSG00000101255 CDS Human protein_coding chr20:368920 chr20:368924 synonymous SNV . 0 25 hm5C_associated_SNPs_61442 0 0 1 0 1 TRIB3 chr20:368945 5'GT 368945 Upstream 22bp
chr9 108397407 108397407 1 + C T STAD 108397405 + 108397385 108397425 41 TCCATGTACCCTGTGAAACCCTCGAATACATTGAAGCCAAC TCCATGTACCCTGTGAAACCCTTGAATACATTGAAGCCAAC < 41bp 0.793529805072636 0.530306392981747 0.9397265 0.16897115 prediction 0.526446824181778 Functional Loss - FKTN ENSG00000106692 CDS Human protein_coding chr9:108397405 chr9:108397407 synonymous SNV . 0 23 hm5C_associated_SNPs_61443 1 0 1 2 2 FKTN chr9:108397332 3'AG 108397332 Downstream 76bp
chr9 108397407 108397407 1 + C T STAD 108397405 + 108397385 108397425 41 TCCATGTACCCTGTGAAACCCTCGAATACATTGAAGCCAAC TCCATGTACCCTGTGAAACCCTTGAATACATTGAAGCCAAC < 41bp 0.793529805072636 0.530306392981747 0.9397265 0.16897115 prediction 0.526446824181778 Functional Loss - FKTN ENSG00000106692 CDS Human protein_coding chr9:108397405 chr9:108397407 synonymous SNV . 0 23 hm5C_associated_SNPs_61443 1 0 1 2 2 FKTN chr9:108397429 5'GT 108397429 Upstream 23bp
chr11 65046229 65046229 1 + C T LUSC 65046227 + 65046207 65046247 41 TCCCTCCCAGAAATACAACTCACGAAGTAACCGAGGAGAAG TCCCTCCCAGAAATACAACTCATGAAGTAACCGAGGAGAAG < 41bp 0.763213696872963 0.483706060100015 0.06153956 0.1046851 prediction 0.526427393745926 Functional Loss - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65046227 chr11:65046229 stopgain 0.284 1 23 hm5C_associated_SNPs_61446 0 0 1 0 1 POLA2 chr11:65046201 3'AG 65046201 Downstream 29bp
chr8 11412914 11412914 1 + G T COAD 11412912 + 11412892 11412932 41 CCCCGCAGAATCCCTGGGCCCAGGATGAATGGGAGATCCCC CCCCGCAGAATCCCTGGGCCCATGATGAATGGGAGATCCCC < 41bp 0.891365579708187 0.628162334955658 0.71985245 0.17227423 prediction 0.526406489505059 Functional Loss - BLK ENSG00000136573 CDS Human protein_coding chr8:11412912 chr8:11412914 nonsynonymous SNV 0.864 1 23 hm5C_associated_SNPs_61447 0 0 0 0 2 BLK chr8:11412841 3'AG 11412841 Downstream 74bp
chr8 11412914 11412914 1 + G T COAD 11412912 + 11412892 11412932 41 CCCCGCAGAATCCCTGGGCCCAGGATGAATGGGAGATCCCC CCCCGCAGAATCCCTGGGCCCATGATGAATGGGAGATCCCC < 41bp 0.891365579708187 0.628162334955658 0.71985245 0.17227423 prediction 0.526406489505059 Functional Loss - BLK ENSG00000136573 CDS Human protein_coding chr8:11412912 chr8:11412914 nonsynonymous SNV 0.864 1 23 hm5C_associated_SNPs_61447 0 0 0 0 2 BLK chr8:11412993 5'GT 11412993 Upstream 80bp
chr17 53068288 53068288 1 + G T LUAD 53068286 + 53068266 53068306 41 AAGGCCCATTGGTATATATTCAGGAAATTATTCCTGGAGGA AAGGCCCATTGGTATATATTCATGAAATTATTCCTGGAGGA < 41bp 0.763200529030172 0.437006580024694 0.9102032 0.31399116 prediction 0.526401058060344 Functional Loss - STXBP4 ENSG00000166263 CDS Human protein_coding chr17:53068286 chr17:53068288 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_61448 0 0 1 0 1 STXBP4 chr17:53068318 5'GT 53068318 Upstream 31bp
chr5 147661765 147661765 1 + G T OV 147661763 + 147661743 147661783 41 CCTCAAATGGCCACACTTTCCAGAATGAGTGTTTCTTTTGT CCTCAAATGGCCACACTTTCCATAATGAGTGTTTCTTTTGT < 41bp 0.857624165092624 0.594435867884546 0.25339285 0.07423675 prediction 0.526376594416156 Functional Loss - SPINK13 ENSG00000214510 CDS Human protein_coding chr5:147661763 chr5:147661765 nonsynonymous SNV 0.834 2 23 hm5C_associated_SNPs_61450 0 0 1 0 2 SPINK13 chr5:147661667 3'AG 147661667 Downstream 99bp
chr5 147661765 147661765 1 + G T OV 147661763 + 147661743 147661783 41 CCTCAAATGGCCACACTTTCCAGAATGAGTGTTTCTTTTGT CCTCAAATGGCCACACTTTCCATAATGAGTGTTTCTTTTGT < 41bp 0.857624165092624 0.594435867884546 0.25339285 0.07423675 prediction 0.526376594416156 Functional Loss - SPINK13 ENSG00000214510 CDS Human protein_coding chr5:147661763 chr5:147661765 nonsynonymous SNV 0.834 2 23 hm5C_associated_SNPs_61450 0 0 1 0 2 SPINK13 chr5:147661794 5'GT 147661794 Upstream 30bp
chr2 136467055 136467055 1 + C T CESC 136467053 + 136467033 136467073 41 ATCAGAACAAGTACAATTTCCTCGAACCACTTCACCATGCA ATCAGAACAAGTACAATTTCCTTGAACCACTTCACCATGCA < 41bp 0.763183389942458 0.469761469779998 0.90934396 0.3455317 prediction 0.526366779884916 Functional Loss - R3HDM1 ENSG00000048991 CDS Human protein_coding chr2:136467053 chr2:136467055 stopgain 0.999 0 23 hm5C_associated_SNPs_61451 0 0 1 0 2 R3HDM1 chr2:136467003 3'AG 136467003 Downstream 53bp
chr2 136467055 136467055 1 + C T CESC 136467053 + 136467033 136467073 41 ATCAGAACAAGTACAATTTCCTCGAACCACTTCACCATGCA ATCAGAACAAGTACAATTTCCTTGAACCACTTCACCATGCA < 41bp 0.763183389942458 0.469761469779998 0.90934396 0.3455317 prediction 0.526366779884916 Functional Loss - R3HDM1 ENSG00000048991 CDS Human protein_coding chr2:136467053 chr2:136467055 stopgain 0.999 0 23 hm5C_associated_SNPs_61451 0 0 1 0 2 R3HDM1 chr2:136467106 5'GT 136467106 Upstream 52bp
chr19 17653043 17653043 1 + A T KIRC 17653039 + 17653019 17653059 41 GGGGCGCTTGGGGCAGCTGGCAGCACCGTTTGGCTTTCTGG GGGGCGCTTGGGGCAGCTGGCAGCTCCGTTTGGCTTTCTGG < 41bp 0.7631824794084 0.470065969570034 0.47892043 0.5652323 prediction 0.526364958816799 Functional Loss - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17653039 chr19:17653043 synonymous SNV . 0 25 hm5C_associated_SNPs_61452 0 0 0 0 2 FAM129C chr19:17652945 3'AG 17652945 Downstream 99bp
chr19 17653043 17653043 1 + A T KIRC 17653039 + 17653019 17653059 41 GGGGCGCTTGGGGCAGCTGGCAGCACCGTTTGGCTTTCTGG GGGGCGCTTGGGGCAGCTGGCAGCTCCGTTTGGCTTTCTGG < 41bp 0.7631824794084 0.470065969570034 0.47892043 0.5652323 prediction 0.526364958816799 Functional Loss - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17653039 chr19:17653043 synonymous SNV . 0 25 hm5C_associated_SNPs_61452 0 0 0 0 2 FAM129C chr19:17653103 5'GT 17653103 Upstream 61bp
chrX 37518857 37518857 1 + C T UCEC 37518855 + 37518835 37518875 41 ACTGCAACTGGCCACCTGAGCTCGGCGAGACCATCGAGAGA ACTGCAACTGGCCACCTGAGCTTGGCGAGACCATCGAGAGA < 41bp 0.777458554641186 0.514276337106443 0.16721949 0.16492304 prediction 0.526364435069487 Functional Loss - LANCL3 ENSG00000147036 CDS Human protein_coding chrX:37518855 chrX:37518857 synonymous SNV . 0 23 hm5C_associated_SNPs_61453 0 0 1 0 1 LANCL3 chrX:37518912 5'GT 37518912 Upstream 56bp
chr1 228335335 228335335 1 + G C LUSC 228335334 + 228335314 228335354 41 AGGAGCAGCGGCTGCGGCAGCGCAACACTGAAACCGAGGAG AGGAGCAGCGGCTGCGGCAGCCCAACACTGAAACCGAGGAG < 41bp 0.845959948779047 0.582782565445565 0.5009197 0.7596673 prediction 0.526354766666964 Functional Loss - GUK1 ENSG00000143774 CDS Human protein_coding chr1:228335334 chr1:228335335 nonsynonymous SNV 0.946 4 22 hm5C_associated_SNPs_61455 0 0 1 0 2 GUK1 chr1:228335316 3'AG 228335316 Downstream 20bp
chr1 228335335 228335335 1 + G C LUSC 228335334 + 228335314 228335354 41 AGGAGCAGCGGCTGCGGCAGCGCAACACTGAAACCGAGGAG AGGAGCAGCGGCTGCGGCAGCCCAACACTGAAACCGAGGAG < 41bp 0.845959948779047 0.582782565445565 0.5009197 0.7596673 prediction 0.526354766666964 Functional Loss - GUK1 ENSG00000143774 CDS Human protein_coding chr1:228335334 chr1:228335335 nonsynonymous SNV 0.946 4 22 hm5C_associated_SNPs_61455 0 0 1 0 2 GUK1 chr1:228335400 5'GT 228335400 Upstream 66bp
chr1 16174571 16174571 1 + G T ACC 16174569 + 16174549 16174589 41 GCACGCCGCCCAGCATGGTCCGGGAAACCAGGCATCTCTGG GCACGCCGCCCAGCATGGTCCGTGAAACCAGGCATCTCTGG < 41bp 0.863456044530619 0.600280301645599 0.9160397 0.4098714 prediction 0.526351485770038 Functional Loss - SPEN ENSG00000065526 CDS Human protein_coding chr1:16174569 chr1:16174571 synonymous SNV . 0 23 hm5C_associated_SNPs_61457 0 0 1 0 1 SPEN chr1:16174645 5'GT 16174645 Upstream 75bp
chr8 56864629 56864629 1 + C T UCEC 56864627 + 56864607 56864647 41 TGGGGGCTATTACATCTCTCCACGAATCACTTTTCCCTGTA TGGGGGCTATTACATCTCTCCATGAATCACTTTTCCCTGTA < 41bp 0.763167956646723 0.473410873817397 0.16651347 0.10385388 prediction 0.526335913293446 Functional Loss - LYN ENSG00000254087 CDS Human protein_coding chr8:56864627 chr8:56864629 stopgain 0.997 1 23 hm5C_associated_SNPs_61458 0 0 1 0 1 LYN chr8:56864674 5'GT 56864674 Upstream 46bp
chrX 11139756 11139756 1 + C T COAD 11139754 + 11139734 11139774 41 ATGAGTTGCCTTTTGATAGGCACGATTGGATCATAAACCGT ATGAGTTGCCTTTTGATAGGCATGATTGGATCATAAACCGT < 41bp 0.763157521846239 0.497376876287313 0.028808266 0.15160862 prediction 0.526315043692477 Functional Loss - HCCS ENSG00000004961 CDS Human protein_coding chrX:11139754 chrX:11139756 synonymous SNV . 0 23 hm5C_associated_SNPs_61459 0 0 1 0 1 HCCS chrX:11139732 3'AG 11139732 Downstream 25bp
chr19 10363088 10363088 1 + G T SARC 10363085 + 10363065 10363105 41 CCTTGCAGGGCCTGAGTTCCCTGGCGGAAGAGGCAGCGCGT CCTTGCAGGGCCTGAGTTCCCTGTCGGAAGAGGCAGCGCGT < 41bp 0.907418429037438 0.644265733058391 0.79630864 0.13070565 prediction 0.526305391958093 Functional Loss - MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10363085 chr19:10363088 nonsynonymous SNV 0.065 1 24 hm5C_associated_SNPs_61460 0 0 1 0 1 MRPL4 chr19:10363073 3'AG 10363073 Downstream 16bp
chr19 14581662 14581662 1 + G T COAD 14581660 + 14581640 14581680 41 GTGAAGAAACAGCCCTTCTTCAGGGTGAGATTCCCCACAAG GTGAAGAAACAGCCCTTCTTCATGGTGAGATTCCCCACAAG < 41bp 0.871308017254378 0.608180078199958 0.9217421 0.3742744 prediction 0.52625587810884 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14581660 chr19:14581662 nonsynonymous SNV 0.791 2 23 hm5C_associated_SNPs_61462 0 0 1 0 1 PKN1 chr19:14581583 3'AG 14581583 Downstream 80bp
chr12 53687096 53687096 1 + C T STAD 53687094 + 53687074 53687114 41 ATCTCTGGGATGTGACTGACCGCGACATTGACCGCTACACG ATCTCTGGGATGTGACTGACCGTGACATTGACCGCTACACG < 41bp 0.763127721654903 0.499420208495052 0.17465195 0.14124072 prediction 0.526255443309805 Functional Loss - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53687094 chr12:53687096 synonymous SNV . 0 23 hm5C_associated_SNPs_61463 0 0 1 0 1 ESPL1 chr12:53687057 3'AG 53687057 Downstream 40bp
chr7 150733680 150733680 1 + G T LIHC 150733678 + 150733658 150733698 41 GGGGCTCCCTTGTGGCCGGACAGCAGCTGACAGGGGGAGAC GGGGCTCCCTTGTGGCCGGACATCAGCTGACAGGGGGAGAC < 41bp 0.763125795898026 0.417430368457678 0.25252378 0.21616387 prediction 0.526251591796052 Functional Loss - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150733678 chr7:150733680 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_61465 0 0 1 0 1 ABCB8 chr7:150733631 3'AG 150733631 Downstream 50bp
chr5 139742048 139742048 1 + G T LUAD 139742046 + 139742026 139742066 41 TCAGGTTTTTCTGCCTTCTCCTGGGCCCCTGTATGCTGGGA TCAGGTTTTTCTGCCTTCTCCTTGGCCCCTGTATGCTGGGA < 41bp 0.763111462895403 0.411280978982549 0.7810695 0.19404408 prediction 0.526222925790807 Functional Loss - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139742046 chr5:139742048 synonymous SNV . 0 23 hm5C_associated_SNPs_61468 0 0 0 0 2 SLC4A9 chr5:139742030 3'AG 139742030 Downstream 19bp
chr5 139742048 139742048 1 + G T LUAD 139742046 + 139742026 139742066 41 TCAGGTTTTTCTGCCTTCTCCTGGGCCCCTGTATGCTGGGA TCAGGTTTTTCTGCCTTCTCCTTGGCCCCTGTATGCTGGGA < 41bp 0.763111462895403 0.411280978982549 0.7810695 0.19404408 prediction 0.526222925790807 Functional Loss - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139742046 chr5:139742048 synonymous SNV . 0 23 hm5C_associated_SNPs_61468 0 0 0 0 2 SLC4A9 chr5:139742117 5'GT 139742117 Upstream 70bp
chr1 155015887 155015887 1 + G T GBM 155015884 + 155015864 155015904 41 AGCTGGGAGCGCGTGAGCACCGAGGTGCGGGACTACGTGTA AGCTGGGAGCGCGTGAGCACCGATGTGCGGGACTACGTGTA < 41bp 0.914731836077261 0.651625312809474 0.89193404 0.26560506 prediction 0.526213046535575 Functional Loss - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155015884 chr1:155015887 nonsynonymous SNV 0.980 0 24 hm5C_associated_SNPs_61470 0 0 0 0 2 DCST1 chr1:155015828 3'AG 155015828 Downstream 60bp
chr1 155015887 155015887 1 + G T GBM 155015884 + 155015864 155015904 41 AGCTGGGAGCGCGTGAGCACCGAGGTGCGGGACTACGTGTA AGCTGGGAGCGCGTGAGCACCGATGTGCGGGACTACGTGTA < 41bp 0.914731836077261 0.651625312809474 0.89193404 0.26560506 prediction 0.526213046535575 Functional Loss - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155015884 chr1:155015887 nonsynonymous SNV 0.980 0 24 hm5C_associated_SNPs_61470 0 0 0 0 2 DCST1 chr1:155015985 5'GT 155015985 Upstream 99bp
chr22 20939447 20939447 1 + C T PRAD 20939445 + 20939425 20939465 41 GATGATGAGCGGCAGAGCATCCCCAGTGTGCTCCAGGGTGA GATGATGAGCGGCAGAGCATCCTCAGTGTGCTCCAGGGTGA < 41bp 0.779121656679516 0.516030387001524 0.11780825 0.1278109 prediction 0.526182539355986 Functional Loss - MED15 ENSG00000099917 CDS Human protein_coding chr22:20939445 chr22:20939447 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_61473 0 0 1 0 1 MED15 chr22:20939388 3'AG 20939388 Downstream 60bp
chr3 122289445 122289445 1 + C T LGG 122289443 + 122289423 122289463 41 TTTTTACAGTGGGGTACTCTCGCGTATTAGGAGTCTCAGAT TTTTTACAGTGGGGTACTCTCGTGTATTAGGAGTCTCAGAT < 41bp 0.763088923379885 0.491857926965443 0.8787052 0.9032942 prediction 0.52617784675977 Functional Loss - DTX3L ENSG00000163840 CDS Human protein_coding chr3:122289443 chr3:122289445 synonymous SNV . 0 23 hm5C_associated_SNPs_61474 0 0 0 0 1 DTX3L chr3:122289519 5'GT 122289519 Upstream 75bp
chr1 119683237 119683237 1 - C A BRCA 119683240 - 119683220 119683260 41 TGCACTCAATGCGGAAAGCGCGTGAGCGCTGGAGCTTCATC TGCACTCAATGCGGAAAGCGCGTTAGCGCTGGAGCTTCATC < 41bp 0.763087165076161 0.388959184152312 0.3523861 0.27962914 prediction 0.526174330152323 Functional Loss - WARS2 ENSG00000116874 CDS Human protein_coding chr1:119683240 chr1:119683237 stopgain 0.978 0 24 hm5C_associated_SNPs_61475 0 0 0 0 1 WARS2 chr1:119683178 5'GT 119683178 Upstream 60bp
chr6 168443303 168443303 1 + G T THCA 168443301 + 168443281 168443321 41 GTGCATCAGCCGCAGCCTTGCGGCCCTGGCAGGCGTCCTGG GTGCATCAGCCGCAGCCTTGCGTCCCTGGCAGGCGTCCTGG < 41bp 0.763080908724421 0.408965058628174 0.8749063 0.5195877 prediction 0.526161817448842 Functional Loss - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168443301 chr6:168443303 nonsynonymous SNV 0.006 3 23 hm5C_associated_SNPs_61476 0 0 0 0 2 KIF25 chr6:168443241 3'AG 168443241 Downstream 63bp
chr6 168443303 168443303 1 + G T THCA 168443301 + 168443281 168443321 41 GTGCATCAGCCGCAGCCTTGCGGCCCTGGCAGGCGTCCTGG GTGCATCAGCCGCAGCCTTGCGTCCCTGGCAGGCGTCCTGG < 41bp 0.763080908724421 0.408965058628174 0.8749063 0.5195877 prediction 0.526161817448842 Functional Loss - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168443301 chr6:168443303 nonsynonymous SNV 0.006 3 23 hm5C_associated_SNPs_61476 0 0 0 0 2 KIF25 chr6:168443396 5'GT 168443396 Upstream 94bp
chrX 129499580 129499580 1 + G T LUSC 129499577 + 129499557 129499597 41 CCCGGTTGATGTGGTTCGAACTCGCATGATGAACCAGAGGG CCCGGTTGATGTGGTTCGAACTCTCATGATGAACCAGAGGG < 41bp 0.763060088155597 0.44660556564635 0.20278043 0.06388229 prediction 0.526120176311195 Functional Loss - SLC25A14 ENSG00000102078 CDS Human protein_coding chrX:129499577 chrX:129499580 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_61479 0 0 1 0 1 SLC25A14 chrX:129499515 3'AG 129499515 Downstream 66bp
chr16 21973829 21973829 1 + G T LUAD 21973827 + 21973807 21973847 41 CTTATACTGTGGAATGCCTGCGGGGTGATGTGTAAGTACCT CTTATACTGTGGAATGCCTGCGTGGTGATGTGTAAGTACCT < 41bp 0.763059237578954 0.45013010588927 0.9047651 0.29119337 prediction 0.526118475157908 Functional Loss - UQCRC2 ENSG00000140740 CDS Human protein_coding chr16:21973827 chr16:21973829 synonymous SNV . 0 23 hm5C_associated_SNPs_61480 0 0 1 0 2 UQCRC2 chr16:21973781 3'AG 21973781 Downstream 49bp
chr16 21973829 21973829 1 + G T LUAD 21973827 + 21973807 21973847 41 CTTATACTGTGGAATGCCTGCGGGGTGATGTGTAAGTACCT CTTATACTGTGGAATGCCTGCGTGGTGATGTGTAAGTACCT < 41bp 0.763059237578954 0.45013010588927 0.9047651 0.29119337 prediction 0.526118475157908 Functional Loss - UQCRC2 ENSG00000140740 CDS Human protein_coding chr16:21973827 chr16:21973829 synonymous SNV . 0 23 hm5C_associated_SNPs_61480 0 0 1 0 2 UQCRC2 chr16:21973837 5'GT 21973837 Upstream 9bp
chr19 50957312 50957312 1 + G T COAD 50957309 + 50957289 50957329 41 ACCGAGGGCAGGACCCGCATCGAGAAGCGGGTGGACTGCAG ACCGAGGGCAGGACCCGCATCGATAAGCGGGTGGACTGCAG < 41bp 0.912914834139187 0.649864463674579 0.8784932 0.7975163 prediction 0.526100740929217 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957309 chr19:50957312 nonsynonymous SNV 0.006 1 24 hm5C_associated_SNPs_61481 0 0 0 0 1 MYBPC2 chr19:50957277 3'AG 50957277 Downstream 36bp
chr7 100192164 100192164 1 + G T UCEC 100192162 + 100192142 100192182 41 GAGCAGCACCCTCTACGTCACAGGTATGGACCACCTCCCCC GAGCAGCACCCTCTACGTCACATGTATGGACCACCTCCCCC < 41bp 0.763044962921151 0.412154038455476 0.41953892 0.36369085 prediction 0.526089925842303 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100192162 chr7:100192164 nonsynonymous SNV 0.589 3 23 hm5C_associated_SNPs_61483 0 0 0 0 1 FBXO24 chr7:100192164 5'GT 100192164 Upstream 1bp
chr20 5897521 5897521 1 + G T LUAD 5897519 + 5897499 5897539 41 TCAAATGCCTTGTCGAAGTCCAGCGCTCCACCCATCACCCC TCAAATGCCTTGTCGAAGTCCATCGCTCCACCCATCACCCC < 41bp 0.763029603092996 0.409067890001414 0.060655862 0.0857918 prediction 0.526059206185991 Functional Loss - CHGB ENSG00000089199 CDS Human protein_coding chr20:5897519 chr20:5897521 nonsynonymous SNV 0.050 1 23 hm5C_associated_SNPs_61485 0 0 0 0 3 CHGB chr20:5897472 3'AG 5897472 Downstream 50bp
chr20 5897521 5897521 1 + G T LUAD 5897519 + 5897499 5897539 41 TCAAATGCCTTGTCGAAGTCCAGCGCTCCACCCATCACCCC TCAAATGCCTTGTCGAAGTCCATCGCTCCACCCATCACCCC < 41bp 0.763029603092996 0.409067890001414 0.060655862 0.0857918 prediction 0.526059206185991 Functional Loss - CHGB ENSG00000089199 CDS Human protein_coding chr20:5897519 chr20:5897521 nonsynonymous SNV 0.050 1 23 hm5C_associated_SNPs_61485 0 0 0 0 3 CHGB chr20:5897552 5'GT 5897552 Upstream 32bp
chr20 5897521 5897521 1 + G T LUAD 5897519 + 5897499 5897539 41 TCAAATGCCTTGTCGAAGTCCAGCGCTCCACCCATCACCCC TCAAATGCCTTGTCGAAGTCCATCGCTCCACCCATCACCCC < 41bp 0.763029603092996 0.409067890001414 0.060655862 0.0857918 prediction 0.526059206185991 Functional Loss - CHGB ENSG00000089199 CDS Human protein_coding chr20:5897519 chr20:5897521 nonsynonymous SNV 0.050 1 23 hm5C_associated_SNPs_61485 0 0 0 0 3 CHGB chr20:5897565 5'GT 5897565 Upstream 45bp
chr8 35425736 35425736 1 + G T COAD 35425734 + 35425714 35425754 41 CACCTGGGTACCTCCAAGAGCAGGAAGGCCTCTGTGCGCAT CACCTGGGTACCTCCAAGAGCATGAAGGCCTCTGTGCGCAT < 41bp 0.763018046990143 0.442343439176157 0.91686237 0.5631085 prediction 0.526036093980286 Functional Loss - UNC5D ENSG00000156687 CDS Human protein_coding chr8:35425734 chr8:35425736 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_61491 0 0 0 0 1 UNC5D chr8:35425759 5'GT 35425759 Upstream 24bp
chrX 54837530 54837530 1 + C T UCEC 54837528 + 54837508 54837548 41 ATCCCAAGAGCCTGAAGCACCACCACCTCGGGATGTGGCCC ATCCCAAGAGCCTGAAGCACCATCACCTCGGGATGTGGCCC < 41bp 0.772638816598851 0.509633868276243 0.06051469 0.10209167 prediction 0.526009896645217 Functional Loss - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54837528 chrX:54837530 nonsynonymous SNV 0.951 1 23 hm5C_associated_SNPs_61493 0 0 1 0 1 MAGED2 chrX:54837479 3'AG 54837479 Downstream 52bp
chr7 856276 856276 1 + G T MESO 856274 + 856254 856294 41 AGCGTCTTCTCGGGCCTGGGCGGCGCAGACGAGGCCTGAGG AGCGTCTTCTCGGGCCTGGGCGTCGCAGACGAGGCCTGAGG < 41bp 0.762985604051185 0.432375223435389 0.77862453 0.39067936 prediction 0.525971208102369 Functional Loss - SUN1 ENSG00000164828 CDS Human protein_coding chr7:856274 chr7:856276 synonymous SNV . 0 23 hm5C_associated_SNPs_61496 0 0 1 0 1 SUN1 chr7:856310 5'GT 856310 Upstream 35bp
chr14 56757051 56757051 1 + G T KIRC 56757049 + 56757029 56757069 41 GGCTCACTACTAATGGCGTCCTGGTGATGCATCCACGAGGG GGCTCACTACTAATGGCGTCCTTGTGATGCATCCACGAGGG < 41bp 0.762985494246847 0.419861944591177 0.32304952 0.24560502 prediction 0.525970988493694 Functional Loss - PELI2 ENSG00000139946 CDS Human protein_coding chr14:56757049 chr14:56757051 synonymous SNV . 0 23 hm5C_associated_SNPs_61497 0 0 1 0 1 PELI2 chr14:56756986 3'AG 56756986 Downstream 66bp
chr14 56757052 56757052 1 + G T KIRC 56757049 + 56757029 56757069 41 GGCTCACTACTAATGGCGTCCTGGTGATGCATCCACGAGGG GGCTCACTACTAATGGCGTCCTGTTGATGCATCCACGAGGG < 41bp 0.762985494246847 0.371781287979084 0.32304952 0.28182757 prediction 0.525970988493694 Functional Loss - PELI2 ENSG00000139946 CDS Human protein_coding chr14:56757049 chr14:56757052 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_61498 0 0 1 0 1 PELI2 chr14:56756986 3'AG 56756986 Downstream 67bp
chr17 1650337 1650337 1 + G C rs554698763 1650333 + 1650313 1650353 41 GTGCTCAGAACCACACGTTGCAGAGGCTGCAACAGGTGCTG GTGCTCAGAACCACACGTTGCAGACGCTGCAACAGGTGCTG < 41bp 0.762982843323169 0.469086594115043 0.7342747 0.28648183 prediction 0.525965686646338 Functional Loss - SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1650333 chr17:1650337 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_61499 0 0 0 0 1 SERPINF2 chr17:1650313 3'AG 1650313 Downstream 25bp
chr1 207870875 207870875 1 + A T LUSC 207870871 + 207870851 207870891 41 GTCAGCCACCTCCAGATGTCCTGCATGCTGAGCGTACCCAA GTCAGCCACCTCCAGATGTCCTGCTTGCTGAGCGTACCCAA < 41bp 0.850376482628332 0.587400187320442 0.19125846 0.1523386 prediction 0.52595259061578 Functional Loss - CR1L ENSG00000197721 CDS Human protein_coding chr1:207870871 chr1:207870875 nonsynonymous SNV 0.019 2 25 hm5C_associated_SNPs_61501 0 0 0 0 1 CR1L chr1:207870848 3'AG 207870848 Downstream 28bp
chr2 187366132 187366132 1 + G T UCEC 187366129 + 187366109 187366149 41 GCGAAGTGTTTACATTGATGCAAGAGATGAAGAACTTGAAA GCGAAGTGTTTACATTGATGCAATAGATGAAGAACTTGAAA < 41bp 0.762964363711395 0.405484259641973 0.44553944 0.12779173 prediction 0.525928727422789 Functional Loss - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187366129 chr2:187366132 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_61503 0 0 1 0 1 ZC3H15 chr2:187366152 5'GT 187366152 Upstream 21bp
chr1 173726268 173726268 1 + A T LGG 173726264 + 173726244 173726284 41 TGTTATATGCAGTAGGAGGCCATGATGGATCCTCTTATCTC TGTTATATGCAGTAGGAGGCCATGTTGGATCCTCTTATCTC < 41bp 0.762959038249015 0.44532814987057 0.13333222 0.12611774 prediction 0.525918076498031 Functional Loss - KLHL20 ENSG00000076321 CDS Human protein_coding chr1:173726264 chr1:173726268 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_61504 0 0 0 0 1 KLHL20 chr1:173726298 5'GT 173726298 Upstream 31bp
chr16 31391090 31391090 1 + G T LUSC 31391087 + 31391067 31391107 41 CCTCTGTGCAGGTCAATAACCTGGGACAGAGGGACCTGCCT CCTCTGTGCAGGTCAATAACCTGTGACAGAGGGACCTGCCT < 41bp 0.762955450758307 0.366213311138817 0.9103194 0.296129 prediction 0.525910901516614 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31391087 chr16:31391090 stopgain 0.976 0 24 hm5C_associated_SNPs_61505 0 0 0 0 2 ITGAX chr16:31391078 3'AG 31391078 Downstream 13bp
chr16 31391090 31391090 1 + G T LUSC 31391087 + 31391067 31391107 41 CCTCTGTGCAGGTCAATAACCTGGGACAGAGGGACCTGCCT CCTCTGTGCAGGTCAATAACCTGTGACAGAGGGACCTGCCT < 41bp 0.762955450758307 0.366213311138817 0.9103194 0.296129 prediction 0.525910901516614 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31391087 chr16:31391090 stopgain 0.976 0 24 hm5C_associated_SNPs_61505 0 0 0 0 2 ITGAX chr16:31391185 5'GT 31391185 Upstream 96bp
chr19 50040399 50040399 1 + A C LUSC 50040395 + 50040375 50040415 41 GGATGGGGACTCGATGGCCACTCGAGAGGAGCTGACAGCCT GGATGGGGACTCGATGGCCACTCGCGAGGAGCTGACAGCCT < 41bp 0.92593473858887 0.662992309370738 0.857248 0.06953797 prediction 0.525884858436262 Functional Loss - RCN3 ENSG00000142552 CDS Human protein_coding chr19:50040395 chr19:50040399 synonymous SNV . 0 25 hm5C_associated_SNPs_61507 0 0 1 0 1 RCN3 chr19:50040462 5'GT 50040462 Upstream 64bp
chr9 131008720 131008720 1 + G T LUAD 131008718 + 131008698 131008738 41 CTGTGGACAACCTCAAGCTGCGGGACGTGGAGAAGGGCTTT CTGTGGACAACCTCAAGCTGCGTGACGTGGAGAAGGGCTTT < 41bp 0.762937006002681 0.424638932202242 0.55714095 0.2149308 prediction 0.525874012005362 Functional Loss - DNM1 ENSG00000106976 CDS Human protein_coding chr9:131008718 chr9:131008720 synonymous SNV . 0 23 hm5C_associated_SNPs_61509 0 0 1 0 2 DNM1 chr9:131008673 3'AG 131008673 Downstream 48bp
chr9 131008720 131008720 1 + G T LUAD 131008718 + 131008698 131008738 41 CTGTGGACAACCTCAAGCTGCGGGACGTGGAGAAGGGCTTT CTGTGGACAACCTCAAGCTGCGTGACGTGGAGAAGGGCTTT < 41bp 0.762937006002681 0.424638932202242 0.55714095 0.2149308 prediction 0.525874012005362 Functional Loss - DNM1 ENSG00000106976 CDS Human protein_coding chr9:131008718 chr9:131008720 synonymous SNV . 0 23 hm5C_associated_SNPs_61509 0 0 1 0 2 DNM1 chr9:131008782 5'GT 131008782 Upstream 63bp
chr7 148451124 148451124 1 + G T UCEC 148451121 + 148451101 148451141 41 GTCAAACCAAGCACGAGGAGCTGGAGTTCCTCCTTCTAAGT GTCAAACCAAGCACGAGGAGCTGTAGTTCCTCCTTCTAAGT < 41bp 0.762923999312183 0.375743339804019 0.3631547 0.070988536 prediction 0.525847998624366 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148451121 chr7:148451124 nonsynonymous SNV 0.981 2 24 hm5C_associated_SNPs_61511 0 0 1 0 1 CUL1 chr7:148451068 3'AG 148451068 Downstream 57bp
chr10 114057835 114057835 1 + C T SKCM 114057833 + 114057813 114057853 41 CCCATCTGCCTCAGCTGCCCCACGGATGAAACCGTCCTCGT CCCATCTGCCTCAGCTGCCCCATGGATGAAACCGTCCTCGT < 41bp 0.766036350465195 0.503114073638516 0.39314052 0.4105247 prediction 0.525844553653358 Functional Loss - TECTB ENSG00000119913 CDS Human protein_coding chr10:114057833 chr10:114057835 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_61513 0 0 0 0 1 TECTB chr10:114057827 3'AG 114057827 Downstream 9bp
chr6 148841011 148841011 1 + C T rs13196292 148841009 + 148840989 148841029 41 AGGGGGAGATGAAGAAGGGTCTCGGGTCCCTAAGCCACGGG AGGGGGAGATGAAGAAGGGTCTTGGGTCCCTAAGCCACGGG < 41bp 0.767904437332486 0.504984855816609 0.6395493 0.66792935 prediction 0.525839163031754 Functional Loss - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148841009 chr6:148841011 synonymous SNV . 0 23 hm5C_associated_SNPs_61514 0 0 1 0 1 SASH1 chr6:148841029 5'GT 148841029 Upstream 19bp
chr12 57884345 57884345 1 + G T THYM 57884343 + 57884323 57884363 41 GGAGGAGCTGGCTACCCTATCTGAGGAGGAGATTGCTATGG GGAGGAGCTGGCTACCCTATCTTAGGAGGAGATTGCTATGG < 41bp 0.762912036481102 0.424487419708495 0.33026454 0.04656434 prediction 0.525824072962203 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57884343 chr12:57884345 stopgain 0.993 0 23 hm5C_associated_SNPs_61515 0 0 1 0 1 MARS chr12:57884321 3'AG 57884321 Downstream 25bp
chr10 105778609 105778609 1 + G T UCEC 105778607 + 105778587 105778627 41 AAAAACACCAGCTGCTCAAACAGCAGCTTAAAGATCAGTAT AAAAACACCAGCTGCTCAAACATCAGCTTAAAGATCAGTAT < 41bp 0.762903572030201 0.443455810105035 0.3887851 0.11230439 prediction 0.525807144060403 Functional Loss - SLK ENSG00000065613 CDS Human protein_coding chr10:105778607 chr10:105778609 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_61518 0 0 1 0 2 SLK chr10:105778542 3'AG 105778542 Downstream 68bp
chr10 105778609 105778609 1 + G T UCEC 105778607 + 105778587 105778627 41 AAAAACACCAGCTGCTCAAACAGCAGCTTAAAGATCAGTAT AAAAACACCAGCTGCTCAAACATCAGCTTAAAGATCAGTAT < 41bp 0.762903572030201 0.443455810105035 0.3887851 0.11230439 prediction 0.525807144060403 Functional Loss - SLK ENSG00000065613 CDS Human protein_coding chr10:105778607 chr10:105778609 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_61518 0 0 1 0 2 SLK chr10:105778666 5'GT 105778666 Upstream 58bp
chr15 67479715 67479715 1 + A C COAD 67479711 + 67479691 67479731 41 TGTTTTTGGCAGGATGCAACCTGAAGATCTTCAACAACCAG TGTTTTTGGCAGGATGCAACCTGACGATCTTCAACAACCAG < 41bp 0.762902503855422 0.348013774209879 0.17056343 0.2226246 prediction 0.525805007710844 Functional Loss - SMAD3 ENSG00000166949 CDS Human protein_coding chr15:67479711 chr15:67479715 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_61519 0 0 1 0 1 SMAD3 chr15:67479703 3'AG 67479703 Downstream 13bp
chr11 60156936 60156936 1 + G T UCEC 60156934 + 60156914 60156954 41 GGCCTCTTCCTCCTTGCTGACAGCATGGTAGCCCTGAGGAC GGCCTCTTCCTCCTTGCTGACATCATGGTAGCCCTGAGGAC < 41bp 0.762890954683164 0.430484042893315 0.6712971 0.3006193 prediction 0.525781909366327 Functional Loss - MS4A7 ENSG00000166927 CDS Human protein_coding chr11:60156934 chr11:60156936 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_61522 0 0 0 0 1 MS4A7 chr11:60156863 3'AG 60156863 Downstream 74bp
chr12 32491758 32491758 1 + G T ESCA 32491756 + 32491736 32491776 41 CTTTGTGATCAGAGCCGTCCCAGGACTTCAGGGGCTTCCTA CTTTGTGATCAGAGCCGTCCCATGACTTCAGGGGCTTCCTA < 41bp 0.865794114066631 0.602905011351686 0.89581424 0.11109719 prediction 0.52577820542989 Functional Loss - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32491756 chr12:32491758 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_61523 0 0 0 0 1 BICD1 chr12:32491720 3'AG 32491720 Downstream 39bp
chr1 86964339 86964339 1 + C T STAD 86964337 + 86964317 86964357 41 GTGTGTTTCAGCAGAACATCCTCGGGAGGCTCATTTGTGGC GTGTGTTTCAGCAGAACATCCTTGGGAGGCTCATTTGTGGC < 41bp 0.762888422403275 0.490417997976477 0.14626747 0.23534441 prediction 0.525776844806551 Functional Loss - CLCA1 ENSG00000016490 CDS Human protein_coding chr1:86964337 chr1:86964339 nonsynonymous SNV 0.703 1 23 hm5C_associated_SNPs_61524 0 0 0 0 1 CLCA1 chr1:86964255 3'AG 86964255 Downstream 85bp
chr10 88419067 88419067 1 + C T STAD 88419065 + 88419045 88419085 41 GGCTCCCAGGCGCCTACGTGCCCGAGGGGTTGCTGACATCC GGCTCCCAGGCGCCTACGTGCCTGAGGGGTTGCTGACATCC < 41bp 0.766054842708611 0.503193450115781 0.14414671 0.19295135 prediction 0.525722785185661 Functional Loss - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88419065 chr10:88419067 synonymous SNV . 0 23 hm5C_associated_SNPs_61528 0 0 0 0 1 OPN4 chr10:88419054 3'AG 88419054 Downstream 14bp
chr7 130024398 130024398 1 + C T UCEC 130024396 + 130024376 130024416 41 GAATCGCATGTGGCGCAAGACTCGGTCCCACACAGCAGGCT GAATCGCATGTGGCGCAAGACTTGGTCCCACACAGCAGGCT < 41bp 0.762850738314787 0.495326452139695 0.24120322 0.11518207 prediction 0.525701476629575 Functional Loss - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130024396 chr7:130024398 nonsynonymous SNV 0.571 4 23 hm5C_associated_SNPs_61531 0 0 0 0 2 CPA1 chr7:130024377 3'AG 130024377 Downstream 22bp
chr7 130024398 130024398 1 + C T UCEC 130024396 + 130024376 130024416 41 GAATCGCATGTGGCGCAAGACTCGGTCCCACACAGCAGGCT GAATCGCATGTGGCGCAAGACTTGGTCCCACACAGCAGGCT < 41bp 0.762850738314787 0.495326452139695 0.24120322 0.11518207 prediction 0.525701476629575 Functional Loss - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130024396 chr7:130024398 nonsynonymous SNV 0.571 4 23 hm5C_associated_SNPs_61531 0 0 0 0 2 CPA1 chr7:130024467 5'GT 130024467 Upstream 70bp
chr7 75610443 75610443 1 + C T ESCA 75610441 + 75610421 75610461 41 TGGACAAGCGGCTGGAGCAGCTCGGCGCCCAGCGCATCTTT TGGACAAGCGGCTGGAGCAGCTTGGCGCCCAGCGCATCTTT < 41bp 0.766454947049231 0.503605154312661 0.37006187 0.28411368 prediction 0.52569958547314 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75610441 chr7:75610443 synonymous SNV . 0 23 hm5C_associated_SNPs_61532 0 0 1 0 2 POR chr7:75610366 3'AG 75610366 Downstream 78bp
chr7 75610443 75610443 1 + C T ESCA 75610441 + 75610421 75610461 41 TGGACAAGCGGCTGGAGCAGCTCGGCGCCCAGCGCATCTTT TGGACAAGCGGCTGGAGCAGCTTGGCGCCCAGCGCATCTTT < 41bp 0.766454947049231 0.503605154312661 0.37006187 0.28411368 prediction 0.52569958547314 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75610441 chr7:75610443 synonymous SNV . 0 23 hm5C_associated_SNPs_61532 0 0 1 0 2 POR chr7:75610490 5'GT 75610490 Upstream 48bp
chr16 68379639 68379639 1 + G C LUAD 68379635 + 68379615 68379655 41 CACAAGAGGAGCCTGTGGTGCAGGGCTCAGCGCTCTATCTG CACAAGAGGAGCCTGTGGTGCAGGCCTCAGCGCTCTATCTG < 41bp 0.824802878414942 0.561953937031516 0.8886348 0.8430407 prediction 0.525697882766852 Functional Loss - PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68379635 chr16:68379639 nonsynonymous SNV 0.857 4 25 hm5C_associated_SNPs_61533 0 0 1 0 2 PRMT7 chr16:68379578 3'AG 68379578 Downstream 62bp
chr16 68379639 68379639 1 + G C LUAD 68379635 + 68379615 68379655 41 CACAAGAGGAGCCTGTGGTGCAGGGCTCAGCGCTCTATCTG CACAAGAGGAGCCTGTGGTGCAGGCCTCAGCGCTCTATCTG < 41bp 0.824802878414942 0.561953937031516 0.8886348 0.8430407 prediction 0.525697882766852 Functional Loss - PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68379635 chr16:68379639 nonsynonymous SNV 0.857 4 25 hm5C_associated_SNPs_61533 0 0 1 0 2 PRMT7 chr16:68379705 5'GT 68379705 Upstream 67bp
chr5 128302237 128302237 1 + A T LUSC 128302233 + 128302213 128302253 41 TGGGCTGCGTGGTGGCCTTTCTCAACACCAACATTCGCTCC TGGGCTGCGTGGTGGCCTTTCTCATCACCAACATTCGCTCC < 41bp 0.872512703163002 0.609674130826039 0.44485012 0.2858756 prediction 0.525677144673926 Functional Loss - SLC27A6 ENSG00000113396 CDS Human protein_coding chr5:128302233 chr5:128302237 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_61537 0 0 0 0 1 SLC27A6 chr5:128302311 5'GT 128302311 Upstream 75bp
chr3 37583973 37583973 1 + G T LUAD 37583971 + 37583951 37583991 41 AAGGAGAAGGGCCAGATGCCCAGGGTCTACTTTGTGCTGCT AAGGAGAAGGGCCAGATGCCCATGGTCTACTTTGTGCTGCT < 41bp 0.762836789312282 0.416979802297346 0.8922437 0.742463 prediction 0.525673578624565 Functional Loss - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37583971 chr3:37583973 nonsynonymous SNV 0.951 4 23 hm5C_associated_SNPs_61538 0 0 0 0 1 ITGA9 chr3:37583916 3'AG 37583916 Downstream 58bp
chr4 88356221 88356221 1 + C T BLCA 88356219 + 88356199 88356239 41 AGAAAATTCTCACAATAAGGCTCGGACGTCTCCTTACCCAG AGAAAATTCTCACAATAAGGCTTGGACGTCTCCTTACCCAG < 41bp 0.771985382587649 0.509149058676491 0.048243046 0.027271628 prediction 0.525672647822317 Functional Loss - NUDT9 ENSG00000170502 CDS Human protein_coding chr4:88356219 chr4:88356221 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_61539 0 0 0 0 1 NUDT9 chr4:88356133 3'AG 88356133 Downstream 89bp
chr16 2287441 2287441 1 + G T HNSC 2287438 + 2287418 2287458 41 ACCCCGAGGACGTCTTCAGCCGCGAGCCCTTCGTGGTCAAG ACCCCGAGGACGTCTTCAGCCGCTAGCCCTTCGTGGTCAAG < 41bp 0.906333718445508 0.643499607550502 0.2965876 0.100526005 prediction 0.525668221790012 Functional Loss - DNASE1L2 ENSG00000167968 CDS Human protein_coding chr16:2287438 chr16:2287441 stopgain 0.941 1 24 hm5C_associated_SNPs_61540 0 0 1 0 2 DNASE1L2 chr16:2287377 3'AG 2287377 Downstream 65bp
chr16 2287441 2287441 1 + G T HNSC 2287438 + 2287418 2287458 41 ACCCCGAGGACGTCTTCAGCCGCGAGCCCTTCGTGGTCAAG ACCCCGAGGACGTCTTCAGCCGCTAGCCCTTCGTGGTCAAG < 41bp 0.906333718445508 0.643499607550502 0.2965876 0.100526005 prediction 0.525668221790012 Functional Loss - DNASE1L2 ENSG00000167968 CDS Human protein_coding chr16:2287438 chr16:2287441 stopgain 0.941 1 24 hm5C_associated_SNPs_61540 0 0 1 0 2 DNASE1L2 chr16:2287477 5'GT 2287477 Upstream 37bp
chr5 175793522 175793522 1 + C T SKCM 175793520 + 175793500 175793540 41 CCACCGCTGGAAGGCCACATCCCCACCTGGGGCTTCAACTC CCACCGCTGGAAGGCCACATCCTCACCTGGGGCTTCAACTC < 41bp 0.762829131334932 0.479678278284946 0.41100532 0.27410495 prediction 0.525658262669865 Functional Loss - ARL10 ENSG00000175414 CDS Human protein_coding chr5:175793520 chr5:175793522 nonsynonymous SNV 0.986 5 23 hm5C_associated_SNPs_61543 0 0 0 0 1 ARL10 chr5:175793584 5'GT 175793584 Upstream 63bp
chr2 201758064 201758064 1 + G T READ 201758061 + 201758041 201758081 41 AATTCAACGTTAACTACACCCAAGACCTGGACAAAGTCATG AATTCAACGTTAACTACACCCAATACCTGGACAAAGTCATG < 41bp 0.762825472976326 0.374290378501905 0.088850975 0.01753351 prediction 0.525650945952652 Functional Loss - NIF3L1 ENSG00000196290 CDS Human protein_coding chr2:201758061 chr2:201758064 nonsynonymous SNV 0.831 2 24 hm5C_associated_SNPs_61544 0 0 1 0 2 NIF3L1 chr2:201757969 3'AG 201757969 Downstream 96bp
chr2 201758064 201758064 1 + G T READ 201758061 + 201758041 201758081 41 AATTCAACGTTAACTACACCCAAGACCTGGACAAAGTCATG AATTCAACGTTAACTACACCCAATACCTGGACAAAGTCATG < 41bp 0.762825472976326 0.374290378501905 0.088850975 0.01753351 prediction 0.525650945952652 Functional Loss - NIF3L1 ENSG00000196290 CDS Human protein_coding chr2:201758061 chr2:201758064 nonsynonymous SNV 0.831 2 24 hm5C_associated_SNPs_61544 0 0 1 0 2 NIF3L1 chr2:201758131 5'GT 201758131 Upstream 68bp
chr1 211451575 211451575 1 + G T LUAD 211451573 + 211451553 211451593 41 AACTAGCTAATAGACATAATCAGGGTGACAGGTAGGTTGGT AACTAGCTAATAGACATAATCATGGTGACAGGTAGGTTGGT < 41bp 0.762821896037553 0.431724485796824 0.95832926 0.91711533 prediction 0.525643792075106 Functional Loss - RCOR3 ENSG00000117625 CDS Human protein_coding chr1:211451573 chr1:211451575 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_61545 0 0 1 1 1 RCOR3 chr1:211451583 5'GT 211451583 Upstream 9bp
chr19 12296976 12296976 1 + G T UCEC 12296973 + 12296953 12296993 41 TTAAAGATCACTACAAACACCGAGGGAGAAATCTAAGGTAA TTAAAGATCACTACAAACACCGATGGAGAAATCTAAGGTAA < 41bp 0.762803065778682 0.397963173897999 0.8974167 0.073500216 prediction 0.525606131557365 Functional Loss - ZNF136 ENSG00000196646 CDS Human protein_coding chr19:12296973 chr19:12296976 nonsynonymous SNV 0.874 1 24 hm5C_associated_SNPs_61547 0 0 1 0 2 ZNF136 chr19:12296929 3'AG 12296929 Downstream 48bp
chr19 12296976 12296976 1 + G T UCEC 12296973 + 12296953 12296993 41 TTAAAGATCACTACAAACACCGAGGGAGAAATCTAAGGTAA TTAAAGATCACTACAAACACCGATGGAGAAATCTAAGGTAA < 41bp 0.762803065778682 0.397963173897999 0.8974167 0.073500216 prediction 0.525606131557365 Functional Loss - ZNF136 ENSG00000196646 CDS Human protein_coding chr19:12296973 chr19:12296976 nonsynonymous SNV 0.874 1 24 hm5C_associated_SNPs_61547 0 0 1 0 2 ZNF136 chr19:12296989 5'GT 12296989 Upstream 14bp
chr1 33959142 33959142 1 + G T STAD 33959140 + 33959120 33959160 41 GTAGTGCTGAGACTGATGCCCAGGAGGCCTGGGGTGAAGTG GTAGTGCTGAGACTGATGCCCATGAGGCCTGGGGTGAAGTG < 41bp 0.880757704866238 0.617960401303906 0.8806058 0.13320544 prediction 0.525594607124664 Functional Loss - ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33959140 chr1:33959142 nonsynonymous SNV 0.011 0 23 hm5C_associated_SNPs_61550 0 0 1 0 1 ZSCAN20 chr1:33959215 5'GT 33959215 Upstream 74bp
chr1 36551473 36551473 1 + A T LIHC 36551469 + 36551449 36551489 41 GCAGAGCAAAACCTGCAGGCCAAGAACCTGCCTCTGGATGT GCAGAGCAAAACCTGCAGGCCAAGTACCTGCCTCTGGATGT < 41bp 0.762792688678439 0.446256735448024 0.16415551 0.106069714 prediction 0.525585377356877 Functional Loss - TEKT2 ENSG00000092850 CDS Human protein_coding chr1:36551469 chr1:36551473 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_61551 0 0 0 0 1 TEKT2 chr1:36551437 3'AG 36551437 Downstream 37bp
chr2 63280181 63280181 1 + G T LUSC 63280179 + 63280159 63280199 41 ATGAACGGGCTGGGCCTGGCCGGGCCCGCCATGGACCTCCT ATGAACGGGCTGGGCCTGGCCGTGCCCGCCATGGACCTCCT < 41bp 0.762777353191473 0.437153879204267 0.3479301 0.04333794 prediction 0.525554706382947 Functional Loss - OTX1 ENSG00000115507 CDS Human protein_coding chr2:63280179 chr2:63280181 nonsynonymous SNV 0.350 3 23 hm5C_associated_SNPs_61554 0 0 0 0 1 OTX1 chr2:63280222 5'GT 63280222 Upstream 42bp
chr10 12142226 12142226 1 + C T LGG 12142224 + 12142204 12142244 41 ATCAAGCTAGACTGGGCCACCGCGGAAGCTCTTGCCTTGGG ATCAAGCTAGACTGGGCCACCGTGGAAGCTCTTGCCTTGGG < 41bp 0.772007660508423 0.509241379501598 0.82941186 0.7552448 prediction 0.525532562013649 Functional Loss - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12142224 chr10:12142226 nonsynonymous SNV 0.668 5 23 hm5C_associated_SNPs_61555 0 0 1 0 2 DHTKD1 chr10:12142177 3'AG 12142177 Downstream 50bp
chr10 12142226 12142226 1 + C T LGG 12142224 + 12142204 12142244 41 ATCAAGCTAGACTGGGCCACCGCGGAAGCTCTTGCCTTGGG ATCAAGCTAGACTGGGCCACCGTGGAAGCTCTTGCCTTGGG < 41bp 0.772007660508423 0.509241379501598 0.82941186 0.7552448 prediction 0.525532562013649 Functional Loss - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12142224 chr10:12142226 nonsynonymous SNV 0.668 5 23 hm5C_associated_SNPs_61555 0 0 1 0 2 DHTKD1 chr10:12142261 5'GT 12142261 Upstream 36bp
chr16 20926975 20926975 1 + C T rs531105424 20926973 + 20926953 20926993 41 ACATCAGGGCAGATGGAAGACACCATCAAAGAAAAACAGTA ACATCAGGGCAGATGGAAGACATCATCAAAGAAAAACAGTA < 41bp 0.797653371930948 0.534891840427491 0.21623564 0.07705513 prediction 0.525523063006913 Functional Loss - LYRM1 ENSG00000102897 CDS Human protein_coding chr16:20926973 chr16:20926975 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_61556 0 0 1 0 2 LYRM1 chr16:20926878 3'AG 20926878 Downstream 98bp
chr16 20926975 20926975 1 + C T rs531105424 20926973 + 20926953 20926993 41 ACATCAGGGCAGATGGAAGACACCATCAAAGAAAAACAGTA ACATCAGGGCAGATGGAAGACATCATCAAAGAAAAACAGTA < 41bp 0.797653371930948 0.534891840427491 0.21623564 0.07705513 prediction 0.525523063006913 Functional Loss - LYRM1 ENSG00000102897 CDS Human protein_coding chr16:20926973 chr16:20926975 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_61556 0 0 1 0 2 LYRM1 chr16:20927036 5'GT 20927036 Upstream 62bp
chr1 154246017 154246017 1 + G T COAD 154246014 + 154245994 154246034 41 TCGGCTTTGATGACCTAGTACGAGATTTCAATAGCATCTTC TCGGCTTTGATGACCTAGTACGATATTTCAATAGCATCTTC < 41bp 0.84693819611476 0.584177295314376 0.6319413 0.0919953 prediction 0.525521801600769 Functional Loss - HAX1 ENSG00000143575 CDS Human protein_coding chr1:154246014 chr1:154246017 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_61557 0 0 1 0 2 HAX1 chr1:154245956 3'AG 154245956 Downstream 62bp
chr1 154246017 154246017 1 + G T COAD 154246014 + 154245994 154246034 41 TCGGCTTTGATGACCTAGTACGAGATTTCAATAGCATCTTC TCGGCTTTGATGACCTAGTACGATATTTCAATAGCATCTTC < 41bp 0.84693819611476 0.584177295314376 0.6319413 0.0919953 prediction 0.525521801600769 Functional Loss - HAX1 ENSG00000143575 CDS Human protein_coding chr1:154246014 chr1:154246017 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_61557 0 0 1 0 2 HAX1 chr1:154246074 5'GT 154246074 Upstream 58bp
chr1 201958062 201958062 1 + G T BLCA 201958060 + 201958040 201958080 41 GTTGGCTCCCGAGCAGACAGCAGGAAAGAAGAAGCCCTTCG GTTGGCTCCCGAGCAGACAGCATGAAAGAAGAAGCCCTTCG < 41bp 0.879480826928867 0.61672937386955 0.781476 0.15341267 prediction 0.525502906118634 Functional Loss - RNPEP ENSG00000176393 CDS Human protein_coding chr1:201958060 chr1:201958062 stopgain 1.000 1 23 hm5C_associated_SNPs_61560 0 0 1 0 1 RNPEP chr1:201958032 3'AG 201958032 Downstream 31bp
chr2 109399276 109399276 1 + G T UCEC 109399273 + 109399253 109399293 41 GGAGAGAAAGGCTTTGGTTTCAAGAATTCCATTTTTCACAG GGAGAGAAAGGCTTTGGTTTCAATAATTCCATTTTTCACAG < 41bp 0.762737213344102 0.420185004540755 0.4323018 0.26993698 prediction 0.525474426688205 Functional Loss - RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109399273 chr2:109399276 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_61562 0 0 1 0 1 RANBP2 chr2:109399318 5'GT 109399318 Upstream 43bp
chr1 198703553 198703553 1 + G T UCEC 198703551 + 198703531 198703571 41 ACTCGATGTGAAGAAGGAAACAGGGTAAGAACCAAGAAGAT ACTCGATGTGAAGAAGGAAACATGGTAAGAACCAAGAAGAT < 41bp 0.762731517567348 0.447356026658905 0.891569 0.2731251 prediction 0.525463035134696 Functional Loss - PTPRC ENSG00000081237 CDS Human protein_coding chr1:198703551 chr1:198703553 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_61565 0 0 0 0 1 PTPRC chr1:198703457 3'AG 198703457 Downstream 97bp
chr19 35655093 35655093 1 + G C BLCA 35655089 + 35655069 35655109 41 TGATGACACCACGACGCTCTCTGAGAGACCATCCCCAAGCA TGATGACACCACGACGCTCTCTGACAGACCATCCCCAAGCA < 41bp 0.815010838496548 0.552295818269943 0.5133938 0.14386687 prediction 0.52543004045321 Functional Loss - FXYD5 ENSG00000089327 CDS Human protein_coding chr19:35655089 chr19:35655093 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_61567 0 0 1 0 2 FXYD5 chr19:35655059 3'AG 35655059 Downstream 35bp
chr19 35655093 35655093 1 + G C BLCA 35655089 + 35655069 35655109 41 TGATGACACCACGACGCTCTCTGAGAGACCATCCCCAAGCA TGATGACACCACGACGCTCTCTGACAGACCATCCCCAAGCA < 41bp 0.815010838496548 0.552295818269943 0.5133938 0.14386687 prediction 0.52543004045321 Functional Loss - FXYD5 ENSG00000089327 CDS Human protein_coding chr19:35655089 chr19:35655093 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_61567 0 0 1 0 2 FXYD5 chr19:35655148 5'GT 35655148 Upstream 56bp
chr8 121463274 121463274 1 + G T UCEC 121463271 + 121463251 121463291 41 GTGGGAGGTATACCTGGTTCCAAGAAGTGGTTCTTTGCAGT GTGGGAGGTATACCTGGTTCCAATAAGTGGTTCTTTGCAGT < 41bp 0.762711923523959 0.397939496040125 0.41188318 0.21630079 prediction 0.525423847047917 Functional Loss - MTBP ENSG00000172167 CDS Human protein_coding chr8:121463271 chr8:121463274 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_61569 0 0 1 0 2 MTBP chr8:121463243 3'AG 121463243 Downstream 32bp
chr8 121463274 121463274 1 + G T UCEC 121463271 + 121463251 121463291 41 GTGGGAGGTATACCTGGTTCCAAGAAGTGGTTCTTTGCAGT GTGGGAGGTATACCTGGTTCCAATAAGTGGTTCTTTGCAGT < 41bp 0.762711923523959 0.397939496040125 0.41188318 0.21630079 prediction 0.525423847047917 Functional Loss - MTBP ENSG00000172167 CDS Human protein_coding chr8:121463271 chr8:121463274 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_61569 0 0 1 0 2 MTBP chr8:121463316 5'GT 121463316 Upstream 43bp
chr8 76472634 76472634 1 + A T rs139324425 76472630 + 76472610 76472650 41 TCCAATGCATCCACATTTGTCTCAAGACCCATTAACTGGAC TCCAATGCATCCACATTTGTCTCATGACCCATTAACTGGAC < 41bp 0.762695232275142 0.42935473042433 0.21017984 0.107966095 prediction 0.525390464550285 Functional Loss - HNF4G ENSG00000164749 CDS Human protein_coding chr8:76472630 chr8:76472634 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_61573 0 0 1 0 2 HNF4G chr8:76472579 3'AG 76472579 Downstream 56bp
chr8 76472634 76472634 1 + A T rs139324425 76472630 + 76472610 76472650 41 TCCAATGCATCCACATTTGTCTCAAGACCCATTAACTGGAC TCCAATGCATCCACATTTGTCTCATGACCCATTAACTGGAC < 41bp 0.762695232275142 0.42935473042433 0.21017984 0.107966095 prediction 0.525390464550285 Functional Loss - HNF4G ENSG00000164749 CDS Human protein_coding chr8:76472630 chr8:76472634 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_61573 0 0 1 0 2 HNF4G chr8:76472701 5'GT 76472701 Upstream 68bp
chr14 24423031 24423031 1 - C A rs1043438 24423033 - 24423013 24423053 41 ATCCGCACCGAATTCCAAGCCCGGGCACAGAGGCCTAGCAG ATCCGCACCGAATTCCAAGCCCTGGCACAGAGGCCTAGCAG < 41bp 0.762691414912157 0.414112233640114 0.3213362 0.04383409 prediction 0.525382829824313 Functional Loss - DHRS4 ENSG00000157326 CDS Human antisense chr14:24423033 chr14:24423031 synonymous SNV . 0 23 hm5C_associated_SNPs_61574 0 0 0 0 1 DHRS4-AS1 chr14:24422983 5'GT 24422983 Upstream 49bp
chr16 89702959 89702959 1 + G T BLCA 89702957 + 89702937 89702977 41 GCAGGCATTCGGCAGGCCTTCCGGGAAGGGAAGGTGGCCAG GCAGGCATTCGGCAGGCCTTCCTGGAAGGGAAGGTGGCCAG < 41bp 0.890769857228148 0.628088014000078 0.85306984 0.19756502 prediction 0.52536368645614 Functional Loss - DPEP1 ENSG00000015413 CDS Human protein_coding chr16:89702957 chr16:89702959 nonsynonymous SNV 0.738 1 23 hm5C_associated_SNPs_61577 0 0 0 0 1 DPEP1 chr16:89702941 3'AG 89702941 Downstream 19bp
chr15 22933765 22933765 1 + C T UCEC 22933763 + 22933743 22933783 41 TTCAGTCTCTGCAGCAGCAGCTCGAAGTGATTTCTGGCTAC TTCAGTCTCTGCAGCAGCAGCTTGAAGTGATTTCTGGCTAC < 41bp 0.762669229805171 0.478255707443533 0.5688276 0.39733112 prediction 0.525338459610342 Functional Loss - CYFIP1 ENSG00000068793 CDS Human other chr15:22933763 chr15:22933765 synonymous SNV . 0 23 hm5C_associated_SNPs_61582 0 0 1 0 1 CYFIP1 chr15:22933748 3'AG 22933748 Downstream 18bp
chr16 68387414 68387414 1 + G C LAML 68387410 + 68387390 68387430 41 CACAGGACCTGTGGCGGATCCGGAGCCCCTGTGGTGACTGC CACAGGACCTGTGGCGGATCCGGACCCCCTGTGGTGACTGC < 41bp 0.80638530286801 0.54371729271764 0.8381698 0.37234646 prediction 0.525336020300739 Functional Loss - PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68387410 chr16:68387414 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_61583 0 0 1 0 2 PRMT7 chr16:68387395 3'AG 68387395 Downstream 20bp
chr16 68387414 68387414 1 + G C LAML 68387410 + 68387390 68387430 41 CACAGGACCTGTGGCGGATCCGGAGCCCCTGTGGTGACTGC CACAGGACCTGTGGCGGATCCGGACCCCCTGTGGTGACTGC < 41bp 0.80638530286801 0.54371729271764 0.8381698 0.37234646 prediction 0.525336020300739 Functional Loss - PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68387410 chr16:68387414 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_61583 0 0 1 0 2 PRMT7 chr16:68387469 5'GT 68387469 Upstream 56bp
chr2 74683363 74683363 1 + G T COAD 74683360 + 74683340 74683380 41 CTGGATGACAATGGAGACCTCAAGAAGGAGATCAATGAGCG CTGGATGACAATGGAGACCTCAATAAGGAGATCAATGAGCG < 41bp 0.762666293655591 0.378388048005406 0.760686 0.3239553 prediction 0.525332587311183 Functional Loss - INO80B ENSG00000115274 CDS Human protein_coding chr2:74683360 chr2:74683363 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_61584 0 0 1 0 2 INO80B chr2:74683275 3'AG 74683275 Downstream 89bp
chr2 74683363 74683363 1 + G T COAD 74683360 + 74683340 74683380 41 CTGGATGACAATGGAGACCTCAAGAAGGAGATCAATGAGCG CTGGATGACAATGGAGACCTCAATAAGGAGATCAATGAGCG < 41bp 0.762666293655591 0.378388048005406 0.760686 0.3239553 prediction 0.525332587311183 Functional Loss - INO80B ENSG00000115274 CDS Human protein_coding chr2:74683360 chr2:74683363 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_61584 0 0 1 0 2 INO80B chr2:74683399 5'GT 74683399 Upstream 37bp
chr12 29464069 29464069 1 + G T BRCA 29464067 + 29464047 29464087 41 GCTAGCTGTAGGATGGTATACTGCAGTTCACAGGTGTGGAT GCTAGCTGTAGGATGGTATACTTCAGTTCACAGGTGTGGAT < 41bp 0.861544807457827 0.598879869663039 0.24139756 0.19674793 prediction 0.525329875589575 Functional Loss - FAR2 ENSG00000064763 CDS Human protein_coding chr12:29464067 chr12:29464069 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_61585 0 0 0 0 1 FAR2 chr12:29464079 5'GT 29464079 Upstream 11bp
chr5 147593512 147593512 1 + A T LUSC 147593508 + 147593488 147593528 41 TTCCAGGACCCCAAGGTCTACTGCACTCGGGAATCTAACCC TTCCAGGACCCCAAGGTCTACTGCTCTCGGGAATCTAACCC < 41bp 0.87105485374628 0.608392896600384 0.23113972 0.1542491 prediction 0.525323914291792 Functional Loss - SPINK6 ENSG00000178172 CDS Human protein_coding chr5:147593508 chr5:147593512 nonsynonymous SNV 0.988 3 25 hm5C_associated_SNPs_61586 0 0 1 0 1 SPINK6 chr5:147593473 3'AG 147593473 Downstream 40bp
chr3 128627045 128627045 1 + C T CESC 128627043 + 128627023 128627063 41 CACAGGGAACCAATGAGATTCTCCGGATGTACATCGCCCTG CACAGGGAACCAATGAGATTCTTCGGATGTACATCGCCCTG < 41bp 0.762637365167854 0.486748944135155 0.13765118 0.12227845 prediction 0.525274730335709 Functional Loss - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128627043 chr3:128627045 synonymous SNV . 0 23 hm5C_associated_SNPs_61589 0 0 1 0 2 ACAD9 chr3:128627028 3'AG 128627028 Downstream 18bp
chr3 128627045 128627045 1 + C T CESC 128627043 + 128627023 128627063 41 CACAGGGAACCAATGAGATTCTCCGGATGTACATCGCCCTG CACAGGGAACCAATGAGATTCTTCGGATGTACATCGCCCTG < 41bp 0.762637365167854 0.486748944135155 0.13765118 0.12227845 prediction 0.525274730335709 Functional Loss - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128627043 chr3:128627045 synonymous SNV . 0 23 hm5C_associated_SNPs_61589 0 0 1 0 2 ACAD9 chr3:128627107 5'GT 128627107 Upstream 63bp
chr16 57269076 57269076 1 + G T UCEC 57269073 + 57269053 57269093 41 TGTTGAAGCAAGTCAGTATCCGAGAAAACTGCTGTTCCCTT TGTTGAAGCAAGTCAGTATCCGATAAAACTGCTGTTCCCTT < 41bp 0.901610293156477 0.638975616535595 0.6470242 0.16816401 prediction 0.525269353241764 Functional Loss - RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57269073 chr16:57269076 stopgain 0.999 1 24 hm5C_associated_SNPs_61590 0 0 1 0 2 RSPRY1 chr16:57269036 3'AG 57269036 Downstream 41bp
chr16 57269076 57269076 1 + G T UCEC 57269073 + 57269053 57269093 41 TGTTGAAGCAAGTCAGTATCCGAGAAAACTGCTGTTCCCTT TGTTGAAGCAAGTCAGTATCCGATAAAACTGCTGTTCCCTT < 41bp 0.901610293156477 0.638975616535595 0.6470242 0.16816401 prediction 0.525269353241764 Functional Loss - RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57269073 chr16:57269076 stopgain 0.999 1 24 hm5C_associated_SNPs_61590 0 0 1 0 2 RSPRY1 chr16:57269140 5'GT 57269140 Upstream 65bp
chr10 26942082 26942082 1 + G C rs147906002 26942078 + 26942058 26942098 41 AGTCCAGCCTGCCCCACCCCCTCCGGTGCAGAGGTCCTGTG AGTCCAGCCTGCCCCACCCCCTCCCGTGCAGAGGTCCTGTG < 41bp 0.762627655273927 0.488834982414618 0.29058152 0.320498 prediction 0.525255310547854 Functional Loss - FAM238B ENSG00000231976 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:26942078 chr10:26942082 . . 0 25 hm5C_associated_SNPs_61592 0 0 0 0 1 FAM238B chr10:26941994 3'AG 26941994 Downstream 89bp
chr19 17888985 17888985 1 + G T UCEC 17888982 + 17888962 17889002 41 CAGTCAGAGGAGCAGGTGTCCAAGAACCTCTTTGGGCCGCC CAGTCAGAGGAGCAGGTGTCCAATAACCTCTTTGGGCCGCC < 41bp 0.762605892492818 0.367788960206055 0.87900376 0.18079585 prediction 0.525211784985637 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17888982 chr19:17888985 nonsynonymous SNV 0.974 0 24 hm5C_associated_SNPs_61597 0 0 1 0 2 FCHO1 chr19:17888946 3'AG 17888946 Downstream 40bp
chr19 17888985 17888985 1 + G T UCEC 17888982 + 17888962 17889002 41 CAGTCAGAGGAGCAGGTGTCCAAGAACCTCTTTGGGCCGCC CAGTCAGAGGAGCAGGTGTCCAATAACCTCTTTGGGCCGCC < 41bp 0.762605892492818 0.367788960206055 0.87900376 0.18079585 prediction 0.525211784985637 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17888982 chr19:17888985 nonsynonymous SNV 0.974 0 24 hm5C_associated_SNPs_61597 0 0 1 0 2 FCHO1 chr19:17889037 5'GT 17889037 Upstream 53bp
chr8 19682462 19682462 1 + A T LUAD 19682458 + 19682438 19682478 41 AATGCATTCCAGTATGTCAACAGCATACAGCCATCTCTCTT AATGCATTCCAGTATGTCAACAGCTTACAGCCATCTCTCTT < 41bp 0.762604277611408 0.431443399022252 0.09033641 0.14635167 prediction 0.525208555222817 Functional Loss - INTS10 ENSG00000104613 CDS Human protein_coding chr8:19682458 chr8:19682462 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_61598 0 0 0 0 1 INTS10 chr8:19682483 5'GT 19682483 Upstream 22bp
chr12 40894964 40894964 1 + G T rs719228 40894961 + 40894941 40894981 41 TCTTGGTGTTTCAGCTACGACTGGGGTGGCTCCTGGCACAA TCTTGGTGTTTCAGCTACGACTGTGGTGGCTCCTGGCACAA < 41bp 0.762598953448172 0.408478955486556 0.840992 0.2865747 prediction 0.525197906896343 Functional Loss - MUC19 ENSG00000205592 intronic Human processed_transcript chr12:40894961 chr12:40894964 . . 0 24 hm5C_associated_SNPs_61600 0 0 0 0 2 MUC19 chr12:40894955 3'AG 40894955 Downstream 10bp
chr12 40894964 40894964 1 + G T rs719228 40894961 + 40894941 40894981 41 TCTTGGTGTTTCAGCTACGACTGGGGTGGCTCCTGGCACAA TCTTGGTGTTTCAGCTACGACTGTGGTGGCTCCTGGCACAA < 41bp 0.762598953448172 0.408478955486556 0.840992 0.2865747 prediction 0.525197906896343 Functional Loss - MUC19 ENSG00000205592 intronic Human processed_transcript chr12:40894961 chr12:40894964 . . 0 24 hm5C_associated_SNPs_61600 0 0 0 0 2 MUC19 chr12:40895008 5'GT 40895008 Upstream 45bp
chr21 33318387 33318387 1 + C T PRAD 33318385 + 33318365 33318405 41 TGCGCAGGGATCCTGGGTTACTCGGATCCGTTCAGCACACA TGCGCAGGGATCCTGGGTTACTTGGATCCGTTCAGCACACA < 41bp 0.791425529217112 0.528833306755946 0.29458705 0.21675459 prediction 0.525184444922332 Functional Loss - HUNK ENSG00000142149 CDS Human protein_coding chr21:33318385 chr21:33318387 nonsynonymous SNV 0.878 2 23 hm5C_associated_SNPs_61601 0 0 0 0 2 HUNK chr21:33318348 3'AG 33318348 Downstream 40bp
chr21 33318387 33318387 1 + C T PRAD 33318385 + 33318365 33318405 41 TGCGCAGGGATCCTGGGTTACTCGGATCCGTTCAGCACACA TGCGCAGGGATCCTGGGTTACTTGGATCCGTTCAGCACACA < 41bp 0.791425529217112 0.528833306755946 0.29458705 0.21675459 prediction 0.525184444922332 Functional Loss - HUNK ENSG00000142149 CDS Human protein_coding chr21:33318385 chr21:33318387 nonsynonymous SNV 0.878 2 23 hm5C_associated_SNPs_61601 0 0 0 0 2 HUNK chr21:33318483 5'GT 33318483 Upstream 97bp
chr22 20909296 20909296 1 + G C THCA 20909292 + 20909272 20909312 41 CGCTGGAATTGGCATGCCTCCTCGGGGCCCGGGACAGTCTC CGCTGGAATTGGCATGCCTCCTCGCGGCCCGGGACAGTCTC < 41bp 0.77392397163427 0.511338659289658 0.37925777 0.2367903 prediction 0.525170624689224 Functional Loss - MED15 ENSG00000099917 CDS Human protein_coding chr22:20909292 chr22:20909296 synonymous SNV . 0 25 hm5C_associated_SNPs_61602 0 0 1 0 1 MED15 chr22:20909223 3'AG 20909223 Downstream 74bp
chr2 114391783 114391783 1 + C T COAD 114391781 + 114391761 114391801 41 ACCCTGTACAAGCACACAGCCACGGTAGATGGCAAGACCAT ACCCTGTACAAGCACACAGCCATGGTAGATGGCAAGACCAT < 41bp 0.781490289045609 0.518907070023683 0.049664587 0.1027146 prediction 0.525166438043851 Functional Loss - RABL2A ENSG00000144134 CDS Human protein_coding chr2:114391781 chr2:114391783 nonsynonymous SNV 0.935 2 23 hm5C_associated_SNPs_61603 0 0 1 0 2 RABL2A chr2:114391730 3'AG 114391730 Downstream 54bp
chr2 114391783 114391783 1 + C T COAD 114391781 + 114391761 114391801 41 ACCCTGTACAAGCACACAGCCACGGTAGATGGCAAGACCAT ACCCTGTACAAGCACACAGCCATGGTAGATGGCAAGACCAT < 41bp 0.781490289045609 0.518907070023683 0.049664587 0.1027146 prediction 0.525166438043851 Functional Loss - RABL2A ENSG00000144134 CDS Human protein_coding chr2:114391781 chr2:114391783 nonsynonymous SNV 0.935 2 23 hm5C_associated_SNPs_61603 0 0 1 0 2 RABL2A chr2:114391809 5'GT 114391809 Upstream 27bp
chr19 1063580 1063580 1 + G T COAD 1063577 + 1063557 1063597 41 CCTGGCGCGTCTGGGACTCTCATGGTACGCAGACCGGCCTG CCTGGCGCGTCTGGGACTCTCATTGTACGCAGACCGGCCTG < 41bp 0.762558576563539 0.37536216188663 0.8274286 0.24989492 prediction 0.525117153127077 Functional Loss - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1063577 chr19:1063580 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_61604 0 0 0 0 2 ABCA7 chr19:1063543 3'AG 1063543 Downstream 38bp
chr19 1063580 1063580 1 + G T COAD 1063577 + 1063557 1063597 41 CCTGGCGCGTCTGGGACTCTCATGGTACGCAGACCGGCCTG CCTGGCGCGTCTGGGACTCTCATTGTACGCAGACCGGCCTG < 41bp 0.762558576563539 0.37536216188663 0.8274286 0.24989492 prediction 0.525117153127077 Functional Loss - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1063577 chr19:1063580 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_61604 0 0 0 0 2 ABCA7 chr19:1063677 5'GT 1063677 Upstream 98bp
chr3 148600343 148600343 1 + G C LUAD 148600342 + 148600322 148600362 41 AACCAAAACTCCAAATGCATCGGCACTGACCTCAACAGGAA AACCAAAACTCCAAATGCATCCGCACTGACCTCAACAGGAA < 41bp 0.808798374647679 0.546242410373889 0.17408472 0.068869054 prediction 0.52511192854758 Functional Loss - CPA3 ENSG00000163751 CDS Human protein_coding chr3:148600342 chr3:148600343 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_61605 0 0 0 0 2 CPA3 chr3:148600292 3'AG 148600292 Downstream 52bp
chr3 148600343 148600343 1 + G C LUAD 148600342 + 148600322 148600362 41 AACCAAAACTCCAAATGCATCGGCACTGACCTCAACAGGAA AACCAAAACTCCAAATGCATCCGCACTGACCTCAACAGGAA < 41bp 0.808798374647679 0.546242410373889 0.17408472 0.068869054 prediction 0.52511192854758 Functional Loss - CPA3 ENSG00000163751 CDS Human protein_coding chr3:148600342 chr3:148600343 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_61605 0 0 0 0 2 CPA3 chr3:148600382 5'GT 148600382 Upstream 40bp
chr1 44440769 44440769 1 + G C rs2286241 44440768 + 44440748 44440788 41 CGTGGCCTTCTGGGCCTGCGCGCTGGCCGTGGGTGAGGCCG CGTGGCCTTCTGGGCCTGCGCCCTGGCCGTGGGTGAGGCCG < 41bp 0.762544778044916 0.461988108021756 0.80244875 0.40858442 prediction 0.525089556089833 Functional Loss - ATP6V0B ENSG00000117410 CDS Human protein_coding chr1:44440768 chr1:44440769 synonymous SNV . 0 22 hm5C_associated_SNPs_61608 0 1 1 0 1 ATP6V0B chr1:44440779 5'GT 44440779 Upstream 11bp
chr19 5047543 5047543 1 + C T READ 5047541 + 5047521 5047561 41 CCATCCTGGACATGGTGGAGCGCGAGTGCGGCACCATCATC CCATCCTGGACATGGTGGAGCGTGAGTGCGGCACCATCATC < 41bp 0.767216122023906 0.504677661514803 0.42930686 0.40158045 prediction 0.525076921018207 Functional Loss - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5047541 chr19:5047543 synonymous SNV . 0 23 hm5C_associated_SNPs_61610 0 0 1 0 1 KDM4B chr19:5047487 3'AG 5047487 Downstream 57bp
chr1 32692093 32692093 1 + G T LAML 32692091 + 32692071 32692111 41 CCTGGGGGAGTGCATCATCGCTGGCCATGAGAGTGGAGAGC CCTGGGGGAGTGCATCATCGCTTGCCATGAGAGTGGAGAGC < 41bp 0.762529357621233 0.426314832743626 0.238974 0.061349064 prediction 0.525058715242466 Functional Loss - EIF3I ENSG00000084623 CDS Human protein_coding chr1:32692091 chr1:32692093 nonsynonymous SNV 0.880 5 23 hm5C_associated_SNPs_61611 0 0 1 0 2 EIF3I chr1:32692004 3'AG 32692004 Downstream 90bp
chr1 32692093 32692093 1 + G T LAML 32692091 + 32692071 32692111 41 CCTGGGGGAGTGCATCATCGCTGGCCATGAGAGTGGAGAGC CCTGGGGGAGTGCATCATCGCTTGCCATGAGAGTGGAGAGC < 41bp 0.762529357621233 0.426314832743626 0.238974 0.061349064 prediction 0.525058715242466 Functional Loss - EIF3I ENSG00000084623 CDS Human protein_coding chr1:32692091 chr1:32692093 nonsynonymous SNV 0.880 5 23 hm5C_associated_SNPs_61611 0 0 1 0 2 EIF3I chr1:32692131 5'GT 32692131 Upstream 39bp
chr6 167719461 167719461 1 + C T UCEC 167719459 + 167719439 167719479 41 GGCTACGTGATGATCTGCTTCTCGGCCACTGACGCGCTGTG GGCTACGTGATGATCTGCTTCTTGGCCACTGACGCGCTGTG < 41bp 0.778439089204936 0.515931426640528 0.22812423 0.22231299 prediction 0.525015325128816 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167719459 chr6:167719461 nonsynonymous SNV 0.426 1 23 hm5C_associated_SNPs_61614 0 0 0 0 2 UNC93A chr6:167719403 3'AG 167719403 Downstream 59bp
chr6 167719461 167719461 1 + C T UCEC 167719459 + 167719439 167719479 41 GGCTACGTGATGATCTGCTTCTCGGCCACTGACGCGCTGTG GGCTACGTGATGATCTGCTTCTTGGCCACTGACGCGCTGTG < 41bp 0.778439089204936 0.515931426640528 0.22812423 0.22231299 prediction 0.525015325128816 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167719459 chr6:167719461 nonsynonymous SNV 0.426 1 23 hm5C_associated_SNPs_61614 0 0 0 0 2 UNC93A chr6:167719538 5'GT 167719538 Upstream 78bp
chr9 136890589 136890589 1 + G C rs433994 136890588 + 136890568 136890608 41 TGGAGACACGGCCCAGCGGCCGCCGGCCCCGCCCTGGGAGC TGGAGACACGGCCCAGCGGCCCCCGGCCCCGCCCTGGGAGC < 41bp 0.821726912581479 0.55922295957681 0.18125805 0.08968389 prediction 0.525007906009339 Functional Loss - LINC00094 ENSG00000235106 ncRNA_exonic Human protein_coding chr9:136890588 chr9:136890589 . . 0 22 hm5C_associated_SNPs_61615 0 0 0 0 1 LINC00094 chr9:136890658 5'GT 136890658 Upstream 70bp
chr20 60847245 60847245 1 + C T COAD 60847243 + 60847223 60847263 41 CTGAGCTTCTTGCAGCGGATCACGGAGTACATGGAGCACGT CTGAGCTTCTTGCAGCGGATCATGGAGTACATGGAGCACGT < 41bp 0.767931291911607 0.505439805128201 0.8106741 0.49418083 prediction 0.524982973566813 Functional Loss - OSBPL2 ENSG00000130703 CDS Human protein_coding chr20:60847243 chr20:60847245 nonsynonymous SNV 0.989 4 23 hm5C_associated_SNPs_61617 0 0 1 0 2 OSBPL2 chr20:60847181 3'AG 60847181 Downstream 65bp
chr20 60847245 60847245 1 + C T COAD 60847243 + 60847223 60847263 41 CTGAGCTTCTTGCAGCGGATCACGGAGTACATGGAGCACGT CTGAGCTTCTTGCAGCGGATCATGGAGTACATGGAGCACGT < 41bp 0.767931291911607 0.505439805128201 0.8106741 0.49418083 prediction 0.524982973566813 Functional Loss - OSBPL2 ENSG00000130703 CDS Human protein_coding chr20:60847243 chr20:60847245 nonsynonymous SNV 0.989 4 23 hm5C_associated_SNPs_61617 0 0 1 0 2 OSBPL2 chr20:60847315 5'GT 60847315 Upstream 71bp
chr1 16070673 16070673 1 + G C BLCA 16070669 + 16070649 16070689 41 CCGCAGGGCTCCCAGGGTGCCGCCGAGAGGCTGCAGCTCTA CCGCAGGGCTCCCAGGGTGCCGCCCAGAGGCTGCAGCTCTA < 41bp 0.808136840448387 0.545666871043947 0.85452724 0.40580013 prediction 0.524939938808881 Functional Loss - TMEM82 ENSG00000162460 CDS Human protein_coding chr1:16070669 chr1:16070673 nonsynonymous SNV 0.236 0 25 hm5C_associated_SNPs_61621 0 0 0 0 1 TMEM82 chr1:16070655 3'AG 16070655 Downstream 19bp
chr15 43641179 43641179 1 + C T LUAD 43641177 + 43641157 43641197 41 GAATCGGGCATGGAACATTTCTCAACTCCGGTGAGGGAGGA GAATCGGGCATGGAACATTTCTTAACTCCGGTGAGGGAGGA < 41bp 0.834864900633552 0.572401367451083 0.10723752 0.08354366 prediction 0.524927066364938 Functional Loss - ADAL ENSG00000168803 CDS Human protein_coding chr15:43641177 chr15:43641179 synonymous SNV . 0 23 hm5C_associated_SNPs_61622 0 0 1 0 2 ADAL chr15:43641105 3'AG 43641105 Downstream 75bp
chr15 43641179 43641179 1 + C T LUAD 43641177 + 43641157 43641197 41 GAATCGGGCATGGAACATTTCTCAACTCCGGTGAGGGAGGA GAATCGGGCATGGAACATTTCTTAACTCCGGTGAGGGAGGA < 41bp 0.834864900633552 0.572401367451083 0.10723752 0.08354366 prediction 0.524927066364938 Functional Loss - ADAL ENSG00000168803 CDS Human protein_coding chr15:43641177 chr15:43641179 synonymous SNV . 0 23 hm5C_associated_SNPs_61622 0 0 1 0 2 ADAL chr15:43641243 5'GT 43641243 Upstream 65bp
chr10 21823681 21823681 1 + G T UCEC 21823678 + 21823658 21823698 41 TCAGACGAGAGAGGCTGGGCCGAGAACCCGCTGGTTTATTG TCAGACGAGAGAGGCTGGGCCGATAACCCGCTGGTTTATTG < 41bp 0.881623045284098 0.619168190200833 0.81595194 0.37245256 prediction 0.52490971016653 Functional Loss - MLLT10 ENSG00000078403 CDS Human protein_coding chr10:21823678 chr10:21823681 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_61625 0 0 1 0 1 MLLT10 chr10:21823733 5'GT 21823733 Upstream 53bp
chrX 149828946 149828946 1 + C T UCEC 149828944 + 149828924 149828964 41 CTTATTCAACTGTGAATCTGCTCGAGAAAGACAGGTGAGTT CTTATTCAACTGTGAATCTGCTTGAGAAAGACAGGTGAGTT < 41bp 0.762451096610481 0.488142403142735 0.20600474 0.15704128 prediction 0.524902193220963 Functional Loss - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149828944 chrX:149828946 stopgain 1.000 1 23 hm5C_associated_SNPs_61626 1 0 0 0 1 MTM1 chrX:149828957 5'GT 149828957 Upstream 12bp
chr10 29578106 29578106 1 + A T LUSC 29578102 + 29578082 29578122 41 TAAGTGGAGCAGTGTTTCTTCCGCAGACTCAACTGAGAAGT TAAGTGGAGCAGTGTTTCTTCCGCTGACTCAACTGAGAAGT < 41bp 0.762447895436401 0.459611978288993 0.26606363 0.16804978 prediction 0.524895790872801 Functional Loss - LYZL1 ENSG00000120563 CDS Human protein_coding chr10:29578102 chr10:29578106 synonymous SNV . 0 25 hm5C_associated_SNPs_61627 0 0 0 0 1 LYZL1 chr10:29578159 5'GT 29578159 Upstream 54bp
chr3 111732311 111732311 1 + G T UCEC 111732309 + 111732289 111732329 41 AGGAGCAGCTTCGCCAGGGACAGAACGTAATAGGCCTGCAG AGGAGCAGCTTCGCCAGGGACATAACGTAATAGGCCTGCAG < 41bp 0.866853873016306 0.604409951674621 0.20198229 0.21741953 prediction 0.52488784268337 Functional Loss - TAGLN3 ENSG00000144834 CDS Human protein_coding chr3:111732309 chr3:111732311 stopgain 1.000 1 23 hm5C_associated_SNPs_61628 0 0 1 0 1 TAGLN3 chr3:111732257 3'AG 111732257 Downstream 55bp
chr7 143001855 143001855 1 + C T STAD 143001853 + 143001833 143001873 41 CTGAGCGGGCTTGTGATATGCACGTGGCCGACATGCTGGTT CTGAGCGGGCTTGTGATATGCATGTGGCCGACATGCTGGTT < 41bp 0.767341026358345 0.504902324364126 0.52246296 0.41923168 prediction 0.52487740398844 Functional Loss - CASP2 ENSG00000106144 CDS Human protein_coding chr7:143001853 chr7:143001855 synonymous SNV . 0 23 hm5C_associated_SNPs_61629 0 0 1 0 2 CASP2 chr7:143001767 3'AG 143001767 Downstream 89bp
chr7 143001855 143001855 1 + C T STAD 143001853 + 143001833 143001873 41 CTGAGCGGGCTTGTGATATGCACGTGGCCGACATGCTGGTT CTGAGCGGGCTTGTGATATGCATGTGGCCGACATGCTGGTT < 41bp 0.767341026358345 0.504902324364126 0.52246296 0.41923168 prediction 0.52487740398844 Functional Loss - CASP2 ENSG00000106144 CDS Human protein_coding chr7:143001853 chr7:143001855 synonymous SNV . 0 23 hm5C_associated_SNPs_61629 0 0 1 0 2 CASP2 chr7:143001876 5'GT 143001876 Upstream 22bp
chr1 32084904 32084904 1 + C T rs1056526 32084902 + 32084882 32084922 41 AGTTTCTCCGCTATCTGTGGCGCGATTATCTGTACCCAAAA AGTTTCTCCGCTATCTGTGGCGTGATTATCTGTACCCAAAA < 41bp 0.763233096180324 0.50079450748415 0.1323945 0.09468794 prediction 0.524877177392347 Functional Loss - HCRTR1 ENSG00000121764 CDS Human protein_coding chr1:32084902 chr1:32084904 synonymous SNV . 0 23 hm5C_associated_SNPs_61630 0 0 0 0 1 HCRTR1 chr1:32084992 5'GT 32084992 Upstream 89bp
chr19 43910665 43910665 1 + G C BLCA 43910664 + 43910644 43910684 41 CTTCAGTTCCCGCATGGGGGCGAGGCAGGTACATGGGCCTT CTTCAGTTCCCGCATGGGGGCCAGGCAGGTACATGGGCCTT < 41bp 0.827706317820923 0.56527763031954 0.91450167 0.56436217 prediction 0.524857375002767 Functional Loss - TEX101 ENSG00000131126 CDS Human protein_coding chr19:43910664 chr19:43910665 synonymous SNV . 0 22 hm5C_associated_SNPs_61631 0 0 0 0 1 TEX101 chr19:43910671 5'GT 43910671 Upstream 7bp
chr9 117020836 117020836 1 + C T GBM 117020834 + 117020814 117020854 41 TTCCCAGGGTCCTCCAGGATCTCGAGGCCCACCAGGCATGA TTCCCAGGGTCCTCCAGGATCTTGAGGCCCACCAGGCATGA < 41bp 0.770150025350667 0.507734278887331 0.7226463 0.26983172 prediction 0.524831492926672 Functional Loss - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117020834 chr9:117020836 stopgain 1.000 0 23 hm5C_associated_SNPs_61633 0 0 1 0 1 COL27A1 chr9:117020874 5'GT 117020874 Upstream 39bp
chr2 125204389 125204389 1 + G T UCEC 125204386 + 125204366 125204406 41 CTGCCACCCTGGGCAGCCTCCTGGATGACCAGCACTGGCAC CTGCCACCCTGGGCAGCCTCCTGTATGACCAGCACTGGCAC < 41bp 0.762406131361356 0.482687017392347 0.90499675 0.19576368 prediction 0.524812262722712 Functional Loss - CNTNAP5 ENSG00000155052 CDS Human protein_coding chr2:125204386 chr2:125204389 nonsynonymous SNV 0.956 4 24 hm5C_associated_SNPs_61634 0 0 0 0 1 CNTNAP5 chr2:125204330 3'AG 125204330 Downstream 60bp
chr17 40452852 40452852 1 + C T HNSC 40452850 + 40452830 40452870 41 GAGATGCTGGCCGAGGTCAACGCCACCATCACGGACATTAT GAGATGCTGGCCGAGGTCAACGTCACCATCACGGACATTAT < 41bp 0.762404152897033 0.490177570260774 0.6475488 0.3395649 prediction 0.524808305794067 Functional Loss - STAT5A ENSG00000126561 CDS Human protein_coding chr17:40452850 chr17:40452852 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_61635 0 0 0 0 1 STAT5A chr17:40452888 5'GT 40452888 Upstream 37bp
chr3 44700284 44700284 1 + G T UCEC 44700282 + 44700262 44700302 41 TCATCATATCAGAAAGAATCCAGAAAGCTGATCCTCAAGGA TCATCATATCAGAAAGAATCCATAAAGCTGATCCTCAAGGA < 41bp 0.762396063895457 0.4476288567099 0.33677447 0.057943255 prediction 0.524792127790914 Functional Loss - ZNF35 ENSG00000169981 CDS Human protein_coding chr3:44700282 chr3:44700284 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_61637 0 0 1 0 1 ZNF35 chr3:44700193 3'AG 44700193 Downstream 92bp
chr4 57883784 57883784 1 + C T UCEC 57883782 + 57883762 57883802 41 CAGGCTATGGGAGTTTACATCACCAACTTCCATGTTCGCAT CAGGCTATGGGAGTTTACATCATCAACTTCCATGTTCGCAT < 41bp 0.821485120251844 0.559096812298158 0.11934438 0.05575469 prediction 0.524776615907371 Functional Loss - POLR2B ENSG00000047315 CDS Human protein_coding chr4:57883782 chr4:57883784 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_61639 0 0 1 0 1 POLR2B chr4:57883726 3'AG 57883726 Downstream 59bp
chr1 109635586 109635586 1 + C T BLCA 109635584 + 109635564 109635604 41 TGCCTACTTCAAGAAAGTACCTCGTCTCAAAACCTGGCTGC TGCCTACTTCAAGAAAGTACCTTGTCTCAAAACCTGGCTGC < 41bp 0.774373653842182 0.511991032503935 0.43573135 0.36796454 prediction 0.524765242676494 Functional Loss - TMEM167B ENSG00000215717 CDS Human protein_coding chr1:109635584 chr1:109635586 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_61641 0 0 1 0 1 TMEM167B chr1:109635643 5'GT 109635643 Upstream 58bp
chr1 995136 995136 1 + G C rs182487714 995135 + 995115 995155 41 GAGCGCACCCCGAGCGCCGGCGAGCGGCGCGGTGAGACCCT GAGCGCACCCCGAGCGCCGGCCAGCGGCGCGGTGAGACCCT < 41bp 0.793324942493106 0.530944180564732 0.8385591 0.4756988 prediction 0.524761523856747 Functional Loss - AGRN;RNF223 ENSG00000217801 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:995135 chr1:995136 . . 0 22 hm5C_associated_SNPs_61642 0 0 0 0 2 AGRN;RNF223 chr1:995162 5'GT 995162 Upstream 27bp
chr1 995136 995136 1 + G C rs182487714 995135 + 995115 995155 41 GAGCGCACCCCGAGCGCCGGCGAGCGGCGCGGTGAGACCCT GAGCGCACCCCGAGCGCCGGCCAGCGGCGCGGTGAGACCCT < 41bp 0.793324942493106 0.530944180564732 0.8385591 0.4756988 prediction 0.524761523856747 Functional Loss - AGRN;RNF223 ENSG00000217801 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:995135 chr1:995136 . . 0 22 hm5C_associated_SNPs_61642 0 0 0 0 2 AGRN;RNF223 chr1:995226 5'GT 995226 Upstream 91bp
chr3 10268074 10268074 1 + C T PRAD 10268072 + 10268052 10268092 41 CAGGTGTTGGCCGAGGTCCTCACGGGCATCCCTGCAATGGA CAGGTGTTGGCCGAGGTCCTCATGGGCATCCCTGCAATGGA < 41bp 0.782878725486713 0.520507063464991 0.92113286 0.91793305 prediction 0.524743324043442 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10268072 chr3:10268074 nonsynonymous SNV 0.422 4 23 hm5C_associated_SNPs_61645 0 0 0 0 2 IRAK2 chr3:10268055 3'AG 10268055 Downstream 20bp
chr3 10268074 10268074 1 + C T PRAD 10268072 + 10268052 10268092 41 CAGGTGTTGGCCGAGGTCCTCACGGGCATCCCTGCAATGGA CAGGTGTTGGCCGAGGTCCTCATGGGCATCCCTGCAATGGA < 41bp 0.782878725486713 0.520507063464991 0.92113286 0.91793305 prediction 0.524743324043442 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10268072 chr3:10268074 nonsynonymous SNV 0.422 4 23 hm5C_associated_SNPs_61645 0 0 0 0 2 IRAK2 chr3:10268117 5'GT 10268117 Upstream 44bp
chr2 39934217 39934217 1 + C T LUSC 39934215 + 39934195 39934235 41 GAAGAATCACTGCTGGCTTCCTCGGCATGGCCGTAGCCGTC GAAGAATCACTGCTGGCTTCCTTGGCATGGCCGTAGCCGTC < 41bp 0.762371523058238 0.484078093501198 0.07399964 0.06524584 prediction 0.524743046116476 Functional Loss - TMEM178A ENSG00000152154 CDS Human protein_coding chr2:39934215 chr2:39934217 synonymous SNV . 0 23 hm5C_associated_SNPs_61646 0 0 0 0 1 TMEM178A chr2:39934189 3'AG 39934189 Downstream 29bp
chr15 41228483 41228483 1 + C T LUSC 41228481 + 41228461 41228501 41 TGCCGCTGCCGTCCTGGATTCACGGGCACCTACTGTGAACT TGCCGCTGCCGTCCTGGATTCATGGGCACCTACTGTGAACT < 41bp 0.762742650093988 0.500383831142386 0.35512513 0.21530214 prediction 0.524717637903205 Functional Loss - DLL4 ENSG00000128917 CDS Human protein_coding chr15:41228481 chr15:41228483 nonsynonymous SNV 0.842 4 23 hm5C_associated_SNPs_61653 0 0 0 0 1 DLL4 chr15:41228426 3'AG 41228426 Downstream 58bp
chr2 228786166 228786166 1 + A C UCEC 228786162 + 228786142 228786182 41 CTTCTAACTGGCAGCTCTGACAAAACGGCTAGAATCTGGGA CTTCTAACTGGCAGCTCTGACAAACCGGCTAGAATCTGGGA < 41bp 0.762354047719052 0.356881727509173 0.38159293 0.54167616 prediction 0.524708095438104 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228786162 chr2:228786166 nonsynonymous SNV 0.891 4 25 hm5C_associated_SNPs_61654 0 0 0 1 1 DAW1 chr2:228786115 3'AG 228786115 Downstream 52bp
chr7 150267073 150267073 1 + G T UCEC 150267070 + 150267050 150267090 41 GAGAGGGCATTCAGTGCTCCCCAGACCAGGCTGCAGGGAGG GAGAGGGCATTCAGTGCTCCCCATACCAGGCTGCAGGGAGG < 41bp 0.762353274366424 0.38423546887992 0.122333705 0.04959035 prediction 0.524706548732847 Functional Loss - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150267070 chr7:150267073 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_61655 0 0 0 0 2 GIMAP4 chr7:150266976 3'AG 150266976 Downstream 98bp
chr7 150267073 150267073 1 + G T UCEC 150267070 + 150267050 150267090 41 GAGAGGGCATTCAGTGCTCCCCAGACCAGGCTGCAGGGAGG GAGAGGGCATTCAGTGCTCCCCATACCAGGCTGCAGGGAGG < 41bp 0.762353274366424 0.38423546887992 0.122333705 0.04959035 prediction 0.524706548732847 Functional Loss - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150267070 chr7:150267073 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_61655 0 0 0 0 2 GIMAP4 chr7:150267089 5'GT 150267089 Upstream 17bp
chr3 186570860 186570860 1 + G T LUAD 186570857 + 186570837 186570877 41 CAGGGCTCAGGATGCTGTTGCTGGGAGCTGTTCTACTGCTA CAGGGCTCAGGATGCTGTTGCTGTGAGCTGTTCTACTGCTA < 41bp 0.762350585693078 0.401713672810393 0.8927071 0.32904533 prediction 0.524701171386155 Functional Loss - ADIPOQ ENSG00000181092 CDS Human antisense chr3:186570857 chr3:186570860 stopgain 0.074 0 24 hm5C_associated_SNPs_61656 0 0 0 0 1 ADIPOQ-AS1 chr3:186570840 3'AG 186570840 Downstream 21bp
chr17 48551331 48551331 1 + C T UCEC 48551329 + 48551309 48551349 41 CTGAAGGACGGGGAGGAGACCACGGTGGAGGAGATAAAAGC CTGAAGGACGGGGAGGAGACCATGGTGGAGGAGATAAAAGC < 41bp 0.76371061868604 0.501363267108477 0.8333997 0.5194246 prediction 0.524694703155127 Functional Loss - ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48551329 chr17:48551331 nonsynonymous SNV 0.004 4 23 hm5C_associated_SNPs_61657 0 0 1 0 2 ACSF2 chr17:48551255 3'AG 48551255 Downstream 77bp
chr17 48551331 48551331 1 + C T UCEC 48551329 + 48551309 48551349 41 CTGAAGGACGGGGAGGAGACCACGGTGGAGGAGATAAAAGC CTGAAGGACGGGGAGGAGACCATGGTGGAGGAGATAAAAGC < 41bp 0.76371061868604 0.501363267108477 0.8333997 0.5194246 prediction 0.524694703155127 Functional Loss - ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48551329 chr17:48551331 nonsynonymous SNV 0.004 4 23 hm5C_associated_SNPs_61657 0 0 1 0 2 ACSF2 chr17:48551365 5'GT 48551365 Upstream 35bp
chr12 130831057 130831057 1 + C T STAD 130831055 + 130831035 130831075 41 GTTCAGCTCTTCTTTTTCAACACGAAGATCTAATTGGAAAG GTTCAGCTCTTCTTTTTCAACATGAAGATCTAATTGGAAAG < 41bp 0.762346723599429 0.479860196985763 0.14237472 0.112784415 prediction 0.524693447198858 Functional Loss - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130831055 chr12:130831057 synonymous SNV . 0 23 hm5C_associated_SNPs_61658 0 0 0 0 1 PIWIL1 chr12:130831129 5'GT 130831129 Upstream 73bp
chr15 81041869 81041869 1 + C T rs114503157 81041867 + 81041847 81041887 41 TCTCCAGGTATGGCGTGAGTCCCGAGAACATTATCCTCTAT TCTCCAGGTATGGCGTGAGTCCTGAGAACATTATCCTCTAT < 41bp 0.803384115355283 0.541041870632943 0.2371121 0.29534924 prediction 0.524684489444679 Functional Loss - ABHD17C ENSG00000136379 CDS Human protein_coding chr15:81041867 chr15:81041869 synonymous SNV . 0 23 hm5C_associated_SNPs_61659 0 0 1 0 2 ABHD17C chr15:81041854 3'AG 81041854 Downstream 16bp
chr15 81041869 81041869 1 + C T rs114503157 81041867 + 81041847 81041887 41 TCTCCAGGTATGGCGTGAGTCCCGAGAACATTATCCTCTAT TCTCCAGGTATGGCGTGAGTCCTGAGAACATTATCCTCTAT < 41bp 0.803384115355283 0.541041870632943 0.2371121 0.29534924 prediction 0.524684489444679 Functional Loss - ABHD17C ENSG00000136379 CDS Human protein_coding chr15:81041867 chr15:81041869 synonymous SNV . 0 23 hm5C_associated_SNPs_61659 0 0 1 0 2 ABHD17C chr15:81041931 5'GT 81041931 Upstream 63bp
chr8 97307406 97307406 1 + G T LUAD 97307403 + 97307383 97307423 41 ATTTTTGCATTTGGACATTTCTGGGGCTGGGCCATGAAGGC ATTTTTGCATTTGGACATTTCTGTGGCTGGGCCATGAAGGC < 41bp 0.913288236157064 0.650963691461379 0.8185142 0.3085277 prediction 0.52464908939137 Functional Loss - PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97307403 chr8:97307406 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_61660 0 0 1 0 2 PTDSS1 chr8:97307326 3'AG 97307326 Downstream 81bp
chr8 97307406 97307406 1 + G T LUAD 97307403 + 97307383 97307423 41 ATTTTTGCATTTGGACATTTCTGGGGCTGGGCCATGAAGGC ATTTTTGCATTTGGACATTTCTGTGGCTGGGCCATGAAGGC < 41bp 0.913288236157064 0.650963691461379 0.8185142 0.3085277 prediction 0.52464908939137 Functional Loss - PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97307403 chr8:97307406 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_61660 0 0 1 0 2 PTDSS1 chr8:97307484 5'GT 97307484 Upstream 79bp
chr3 128621412 128621412 1 + T C LIHC 128621411 + 128621391 128621431 41 TGCAGGTGGCCATGAACATCCTCAACAGCGGCCGGTTCAGC TGCAGGTGGCCATGAACATCCCCAACAGCGGCCGGTTCAGC < 41bp 0.768958734832921 0.506634338711031 0.17876858 0.12414691 prediction 0.524648792243781 Functional Loss - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128621411 chr3:128621412 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_61661 0 0 1 0 3 ACAD9 chr3:128621396 3'AG 128621396 Downstream 17bp
chr3 128621412 128621412 1 + T C LIHC 128621411 + 128621391 128621431 41 TGCAGGTGGCCATGAACATCCTCAACAGCGGCCGGTTCAGC TGCAGGTGGCCATGAACATCCCCAACAGCGGCCGGTTCAGC < 41bp 0.768958734832921 0.506634338711031 0.17876858 0.12414691 prediction 0.524648792243781 Functional Loss - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128621411 chr3:128621412 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_61661 0 0 1 0 3 ACAD9 chr3:128621471 5'GT 128621471 Upstream 60bp
chr3 128621412 128621412 1 + T C LIHC 128621411 + 128621391 128621431 41 TGCAGGTGGCCATGAACATCCTCAACAGCGGCCGGTTCAGC TGCAGGTGGCCATGAACATCCCCAACAGCGGCCGGTTCAGC < 41bp 0.768958734832921 0.506634338711031 0.17876858 0.12414691 prediction 0.524648792243781 Functional Loss - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128621411 chr3:128621412 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_61661 0 0 1 0 3 ACAD9 chr3:128621475 5'GT 128621475 Upstream 64bp
chr9 847104 847104 1 + C T BRCA 847102 + 847082 847122 41 GACTGAGTGCAGTGGCACCTCTCAGCCACCGCCGGCCAGTG GACTGAGTGCAGTGGCACCTCTTAGCCACCGCCGGCCAGTG < 41bp 0.764628367545632 0.502306507633895 0.026885957 0.020073295 prediction 0.524643719823474 Functional Loss - DMRT1 ENSG00000137090 CDS Human protein_coding chr9:847102 chr9:847104 stopgain 0.055 0 23 hm5C_associated_SNPs_61662 0 0 0 0 1 DMRT1 chr9:847143 5'GT 847143 Upstream 40bp
chr19 55086414 55086414 1 + G C LUAD 55086410 + 55086390 55086430 41 TGGGCCCCGTGAGCCCGAGTCGCAGGTGGTCGTACAGGTGC TGGGCCCCGTGAGCCCGAGTCGCACGTGGTCGTACAGGTGC < 41bp 0.762310668890203 0.462463672785461 0.7475223 0.12462109 prediction 0.524621337780405 Functional Loss - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55086410 chr19:55086414 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_61664 0 0 0 0 1 LILRA2 chr19:55086500 5'GT 55086500 Upstream 87bp
chr6 30879923 30879923 1 + G T UCEC 30879921 + 30879901 30879941 41 TTACCGACTGTATGCCTACACGGGTGAGGCGGGACAGAGGG TTACCGACTGTATGCCTACACGTGTGAGGCGGGACAGAGGG < 41bp 0.762309230508624 0.476975194634307 0.5097128 0.1923072 prediction 0.524618461017248 Functional Loss - GTF2H4 ENSG00000213780 CDS Human protein_coding chr6:30879921 chr6:30879923 stopgain 0.246 0 23 hm5C_associated_SNPs_61665 0 0 0 0 1 GTF2H4 chr6:30879923 5'GT 30879923 Upstream 1bp
chr17 79204451 79204451 1 - C A LUSC 79204454 - 79204434 79204474 41 CGCTGTGTGCCATCGCCTCCCTGGGGAGCAGCGACCTCCTC CGCTGTGTGCCATCGCCTCCCTGTGGAGCAGCGACCTCCTC < 41bp 0.915778104302175 0.653472061330338 0.36924648 0.06681362 prediction 0.524612085943676 Functional Loss - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79204454 chr17:79204451 nonsynonymous SNV 0.000 3 24 hm5C_associated_SNPs_61666 0 0 0 0 1 TEPSIN chr17:79204478 3'AG 79204478 Downstream 28bp
chr17 57289759 57289759 1 + G T ESCA 57289756 + 57289736 57289776 41 GCTATATCACAATAGCCGAGCTCGATCTACTGGTGCTTGCA GCTATATCACAATAGCCGAGCTCTATCTACTGGTGCTTGCA < 41bp 0.762305740851376 0.381417113073246 0.24417916 0.593288 prediction 0.524611481702752 Functional Loss - SMG8 ENSG00000167447 CDS Human protein_coding chr17:57289756 chr17:57289759 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_61667 0 0 1 0 2 SMG8 chr17:57289702 3'AG 57289702 Downstream 58bp
chr17 57289759 57289759 1 + G T ESCA 57289756 + 57289736 57289776 41 GCTATATCACAATAGCCGAGCTCGATCTACTGGTGCTTGCA GCTATATCACAATAGCCGAGCTCTATCTACTGGTGCTTGCA < 41bp 0.762305740851376 0.381417113073246 0.24417916 0.593288 prediction 0.524611481702752 Functional Loss - SMG8 ENSG00000167447 CDS Human protein_coding chr17:57289756 chr17:57289759 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_61667 0 0 1 0 2 SMG8 chr17:57289847 5'GT 57289847 Upstream 89bp
chr9 34656778 34656778 1 + C T SKCM 34656776 + 34656756 34656796 41 GGGATGGGGAGCCAAAGCTGCTCCAGGGACCTGACTCTGGG GGGATGGGGAGCCAAAGCTGCTTCAGGGACCTGACTCTGGG < 41bp 0.816960976924684 0.554656185667488 0.9306354 0.40609592 prediction 0.524609582514392 Functional Loss - IL11RA ENSG00000137070;ENSG00000258728 CDS Human other chr9:34656776 chr9:34656778 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_61668 0 0 1 0 1 IL11RA chr9:34656736 3'AG 34656736 Downstream 43bp
chr19 42791806 42791806 1 + G T LGG 42791804 + 42791784 42791824 41 AACCAGGACAACCGGACCGTCAGCAAGATCCTGGGCGAGTG AACCAGGACAACCGGACCGTCATCAAGATCCTGGGCGAGTG < 41bp 0.762303967744698 0.42174478921424 0.10954979 0.019826442 prediction 0.524607935489397 Functional Loss - CIC ENSG00000079432 CDS Human protein_coding chr19:42791804 chr19:42791806 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_61669 0 0 1 0 1 CIC chr19:42791879 5'GT 42791879 Upstream 74bp
chr7 40488938 40488938 1 + A T COAD 40488934 + 40488914 40488954 41 TAGTTGGAGCAGGAAATAACCAGCAGTTTGCCACCGTCTGC TAGTTGGAGCAGGAAATAACCAGCTGTTTGCCACCGTCTGC < 41bp 0.762287726436513 0.497273526671389 0.44887325 0.54387796 prediction 0.524575452873026 Functional Loss - SUGCT ENSG00000175600 CDS Human protein_coding chr7:40488934 chr7:40488938 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_61670 0 0 0 0 2 SUGCT chr7:40488886 3'AG 40488886 Downstream 53bp
chr7 40488938 40488938 1 + A T COAD 40488934 + 40488914 40488954 41 TAGTTGGAGCAGGAAATAACCAGCAGTTTGCCACCGTCTGC TAGTTGGAGCAGGAAATAACCAGCTGTTTGCCACCGTCTGC < 41bp 0.762287726436513 0.497273526671389 0.44887325 0.54387796 prediction 0.524575452873026 Functional Loss - SUGCT ENSG00000175600 CDS Human protein_coding chr7:40488934 chr7:40488938 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_61670 0 0 0 0 2 SUGCT chr7:40488957 5'GT 40488957 Upstream 20bp
chr10 103917203 103917203 1 + G C UCEC 103917202 + 103917182 103917222 41 GTTCAGCTGTACCTGCCAAGCGAGTCGGTCTGCCTCCTGGG GTTCAGCTGTACCTGCCAAGCCAGTCGGTCTGCCTCCTGGG < 41bp 0.762286830038971 0.447955179883203 0.26878494 0.2541129 prediction 0.524573660077943 Functional Loss - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103917202 chr10:103917203 nonsynonymous SNV 0.206 1 22 hm5C_associated_SNPs_61671 0 0 1 0 1 NOLC1 chr10:103917188 3'AG 103917188 Downstream 16bp
chr9 136401833 136401833 1 + G T SARC 136401830 + 136401810 136401850 41 GGTGACAGTGGCCTTGCTTCCTAGGATGGATGGCAGATGGC GGTGACAGTGGCCTTGCTTCCTATGATGGATGGCAGATGGC < 41bp 0.766070679281905 0.503785618193854 0.331868 0.12301323 prediction 0.524570122176102 Functional Loss - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136401830 chr9:136401833 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_61672 0 0 0 0 1 ADAMTSL2 chr9:136401924 5'GT 136401924 Upstream 92bp
chrX 149814177 149814177 1 + G T UCEC 149814175 + 149814155 149814195 41 GGTGCTGTCATGGATTCATCCAGAAAATAAGACGGTCATTG GGTGCTGTCATGGATTCATCCATAAAATAAGACGGTCATTG < 41bp 0.762284608494009 0.427295671779153 0.16922686 0.03642291 prediction 0.524569216988019 Functional Loss - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149814175 chrX:149814177 stopgain 1.000 1 23 hm5C_associated_SNPs_61673 0 0 0 0 1 MTM1 chrX:149814156 3'AG 149814156 Downstream 22bp
chr19 36606535 36606535 1 + G C BLCA 36606534 + 36606514 36606554 41 TCCCTCAACACCTTCCGCTCCGAGAAGCGATACAGCCGCAG TCCCTCAACACCTTCCGCTCCCAGAAGCGATACAGCCGCAG < 41bp 0.834977379680586 0.572702391488616 0.66618407 0.20783645 prediction 0.524549976383941 Functional Loss - TBCB ENSG00000105254 CDS Human protein_coding chr19:36606534 chr19:36606535 nonsynonymous SNV 0.730 1 22 hm5C_associated_SNPs_61674 0 0 1 0 1 TBCB chr19:36606576 5'GT 36606576 Upstream 42bp
chr9 137007159 137007159 1 + C T GBM 137007157 + 137007137 137007177 41 TTGAAGATATGGGACGTGAGCTCGGTAAGTGACACTCAGTG TTGAAGATATGGGACGTGAGCTTGGTAAGTGACACTCAGTG < 41bp 0.762266932081966 0.492144208024185 0.12498909 0.22265431 prediction 0.524533864163931 Functional Loss - WDR5 ENSG00000196363 CDS Human protein_coding chr9:137007157 chr9:137007159 nonsynonymous SNV 0.883 3 23 hm5C_associated_SNPs_61676 0 0 1 0 2 WDR5 chr9:137007071 3'AG 137007071 Downstream 89bp
chr9 137007159 137007159 1 + C T GBM 137007157 + 137007137 137007177 41 TTGAAGATATGGGACGTGAGCTCGGTAAGTGACACTCAGTG TTGAAGATATGGGACGTGAGCTTGGTAAGTGACACTCAGTG < 41bp 0.762266932081966 0.492144208024185 0.12498909 0.22265431 prediction 0.524533864163931 Functional Loss - WDR5 ENSG00000196363 CDS Human protein_coding chr9:137007157 chr9:137007159 nonsynonymous SNV 0.883 3 23 hm5C_associated_SNPs_61676 0 0 1 0 2 WDR5 chr9:137007160 5'GT 137007160 Upstream 2bp
chr21 43945944 43945944 1 + C T LUSC 43945942 + 43945922 43945962 41 GTATGCAAGTTTTCACTTATCTCGAAAGCCTATCAGCATAG GTATGCAAGTTTTCACTTATCTTGAAAGCCTATCAGCATAG < 41bp 0.801705832572216 0.539451918535249 0.8834619 0.2564662 prediction 0.524507828073933 Functional Loss - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43945942 chr21:43945944 stopgain 0.999 1 23 hm5C_associated_SNPs_61680 0 0 0 0 2 SLC37A1 chr21:43945886 3'AG 43945886 Downstream 59bp
chr21 43945944 43945944 1 + C T LUSC 43945942 + 43945922 43945962 41 GTATGCAAGTTTTCACTTATCTCGAAAGCCTATCAGCATAG GTATGCAAGTTTTCACTTATCTTGAAAGCCTATCAGCATAG < 41bp 0.801705832572216 0.539451918535249 0.8834619 0.2564662 prediction 0.524507828073933 Functional Loss - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43945942 chr21:43945944 stopgain 0.999 1 23 hm5C_associated_SNPs_61680 0 0 0 0 2 SLC37A1 chr21:43945967 5'GT 43945967 Upstream 24bp
chr11 20648340 20648340 1 + G C HNSC 20648336 + 20648316 20648356 41 CACCCTGCCTGGAGCTGGAGCTGGGATCTGGTACTTCATCA CACCCTGCCTGGAGCTGGAGCTGGCATCTGGTACTTCATCA < 41bp 0.762249500127539 0.46080786534134 0.8825979 0.5646819 prediction 0.524499000255078 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20648336 chr11:20648340 synonymous SNV . 0 25 hm5C_associated_SNPs_61681 0 0 0 0 2 SLC6A5 chr11:20648254 3'AG 20648254 Downstream 87bp
chr11 20648340 20648340 1 + G C HNSC 20648336 + 20648316 20648356 41 CACCCTGCCTGGAGCTGGAGCTGGGATCTGGTACTTCATCA CACCCTGCCTGGAGCTGGAGCTGGCATCTGGTACTTCATCA < 41bp 0.762249500127539 0.46080786534134 0.8825979 0.5646819 prediction 0.524499000255078 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20648336 chr11:20648340 synonymous SNV . 0 25 hm5C_associated_SNPs_61681 0 0 0 0 2 SLC6A5 chr11:20648388 5'GT 20648388 Upstream 49bp
chr19 51649378 51649378 1 + G T UCEC 51649376 + 51649356 51649396 41 CTCCCTGCAACAGGAGTACACAGGTGGGTAAGGGAGGGGCT CTCCCTGCAACAGGAGTACACATGTGGGTAAGGGAGGGGCT < 41bp 0.762242952945947 0.411498314019451 0.89291966 0.6225728 prediction 0.524485905891895 Functional Loss - SIGLEC7 ENSG00000168995 CDS Human protein_coding chr19:51649376 chr19:51649378 nonsynonymous SNV 0.006 0 23 hm5C_associated_SNPs_61684 0 0 0 0 1 SIGLEC7 chr19:51649378 5'GT 51649378 Upstream 1bp
chr20 48431694 48431694 1 + G T UCEC 48431692 + 48431672 48431712 41 CAGCAAGAGGAGCAGTCCAGCGGCATGACCATTTTCTTCAG CAGCAAGAGGAGCAGTCCAGCGTCATGACCATTTTCTTCAG < 41bp 0.873794342279414 0.611558415056512 0.5466258 0.1926969 prediction 0.524471854445804 Functional Loss - SLC9A8 ENSG00000197818 CDS Human protein_coding chr20:48431692 chr20:48431694 nonsynonymous SNV 0.951 3 23 hm5C_associated_SNPs_61686 0 0 1 0 1 SLC9A8 chr20:48431726 5'GT 48431726 Upstream 33bp
chr20 31022333 31022333 1 + G T LUSC 31022331 + 31022311 31022351 41 CCACCACGGAGTCCTCCTGCCGGGGTTGGACTGGCGCCAGG CCACCACGGAGTCCTCCTGCCGTGGTTGGACTGGCGCCAGG < 41bp 0.87625664250225 0.61402106843914 0.9189429 0.8022084 prediction 0.52447114812622 Functional Loss - ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31022331 chr20:31022333 synonymous SNV . 0 23 hm5C_associated_SNPs_61687 0 0 1 0 1 ASXL1 chr20:31022235 3'AG 31022235 Downstream 99bp
chr13 113487241 113487241 1 + G T SARC 113487239 + 113487219 113487259 41 GTCCAGGTGAAAGACGATGACAGCGTAGACGGCCCCAGGAA GTCCAGGTGAAAGACGATGACATCGTAGACGGCCCCAGGAA < 41bp 0.762233102530561 0.414934144941963 0.5692624 0.30813366 prediction 0.524466205061123 Functional Loss - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113487239 chr13:113487241 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_61688 0 0 1 0 2 ATP11A chr13:113487174 3'AG 113487174 Downstream 68bp
chr13 113487241 113487241 1 + G T SARC 113487239 + 113487219 113487259 41 GTCCAGGTGAAAGACGATGACAGCGTAGACGGCCCCAGGAA GTCCAGGTGAAAGACGATGACATCGTAGACGGCCCCAGGAA < 41bp 0.762233102530561 0.414934144941963 0.5692624 0.30813366 prediction 0.524466205061123 Functional Loss - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113487239 chr13:113487241 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_61688 0 0 1 0 2 ATP11A chr13:113487337 5'GT 113487337 Upstream 97bp
chr19 36120441 36120441 1 + G T SARC 36120438 + 36120418 36120458 41 CCAGGTTTGAGCAGGAAGTTCTGGGGGCTCCAGTACCTGGA CCAGGTTTGAGCAGGAAGTTCTGTGGGCTCCAGTACCTGGA < 41bp 0.911911787227831 0.649685836532951 0.9194739 0.79370904 prediction 0.52445190138976 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36120438 chr19:36120441 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_61689 0 0 1 0 1 RBM42 chr19:36120422 3'AG 36120422 Downstream 20bp
chr3 179322657 179322657 1 + G C LUSC 179322653 + 179322633 179322673 41 TTCGGTTACTGCGGTGGCAGCTCTGTCTGGCCGGCCCCTTG TTCGGTTACTGCGGTGGCAGCTCTCTCTGGCCGGCCCCTTG < 41bp 0.763043354846531 0.500819783310736 0.31633997 0.1996941 prediction 0.52444714307159 Functional Loss - NDUFB5 ENSG00000136521 CDS Human protein_coding chr3:179322653 chr3:179322657 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_61690 0 0 1 0 1 NDUFB5 chr3:179322727 5'GT 179322727 Upstream 71bp
chr15 41794639 41794639 1 + C T UCEC 41794637 + 41794617 41794657 41 CAGCACCGACTTCAAGACTACGCGAAGCCGAGAGCAGGTGC CAGCACCGACTTCAAGACTACGTGAAGCCGAGAGCAGGTGC < 41bp 0.787443651174107 0.525221053648038 0.3115903 0.31934977 prediction 0.524445195052138 Functional Loss - ITPKA ENSG00000137825 CDS Human protein_coding chr15:41794637 chr15:41794639 stopgain 0.944 1 23 hm5C_associated_SNPs_61691 0 0 0 0 2 ITPKA chr15:41794600 3'AG 41794600 Downstream 40bp
chr15 41794639 41794639 1 + C T UCEC 41794637 + 41794617 41794657 41 CAGCACCGACTTCAAGACTACGCGAAGCCGAGAGCAGGTGC CAGCACCGACTTCAAGACTACGTGAAGCCGAGAGCAGGTGC < 41bp 0.787443651174107 0.525221053648038 0.3115903 0.31934977 prediction 0.524445195052138 Functional Loss - ITPKA ENSG00000137825 CDS Human protein_coding chr15:41794637 chr15:41794639 stopgain 0.944 1 23 hm5C_associated_SNPs_61691 0 0 0 0 2 ITPKA chr15:41794701 5'GT 41794701 Upstream 63bp
chr3 52544058 52544058 1 + G T LUAD 52544056 + 52544036 52544076 41 TGCATGCCCGCTGTGTTAGCCAGGAGGGTGTTGCCAGGTGA TGCATGCCCGCTGTGTTAGCCATGAGGGTGTTGCCAGGTGA < 41bp 0.762212110416153 0.441921255813405 0.9282948 0.56488246 prediction 0.524424220832306 Functional Loss - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52544056 chr3:52544058 nonsynonymous SNV 0.020 1 23 hm5C_associated_SNPs_61692 0 0 0 0 1 STAB1 chr3:52544072 5'GT 52544072 Upstream 15bp
chr10 5248339 5248339 1 + G T OV 5248336 + 5248316 5248356 41 ATCCTCAACAAGCCAGGACTCAAGTACAAGCCTGTCTGCAA ATCCTCAACAAGCCAGGACTCAATTACAAGCCTGTCTGCAA < 41bp 0.762202223469405 0.376056263506023 0.63967264 0.26685956 prediction 0.524404446938811 Functional Loss - AKR1C4 ENSG00000198610 CDS Human protein_coding chr10:5248336 chr10:5248339 nonsynonymous SNV 0.956 4 24 hm5C_associated_SNPs_61694 0 0 0 0 1 AKR1C4 chr10:5248360 5'GT 5248360 Upstream 22bp
chr2 202698648 202698648 1 + G T UCEC 202698646 + 202698626 202698666 41 TTCACAGGGACCTGAAACCTCAGAACTTACTCATCAGTCAC TTCACAGGGACCTGAAACCTCATAACTTACTCATCAGTCAC < 41bp 0.762192480518497 0.426215399204409 0.47387594 0.22916767 prediction 0.524384961036994 Functional Loss - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202698646 chr2:202698648 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_61696 0 0 0 0 2 CDK15 chr2:202698571 3'AG 202698571 Downstream 78bp
chr2 202698648 202698648 1 + G T UCEC 202698646 + 202698626 202698666 41 TTCACAGGGACCTGAAACCTCAGAACTTACTCATCAGTCAC TTCACAGGGACCTGAAACCTCATAACTTACTCATCAGTCAC < 41bp 0.762192480518497 0.426215399204409 0.47387594 0.22916767 prediction 0.524384961036994 Functional Loss - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202698646 chr2:202698648 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_61696 0 0 0 0 2 CDK15 chr2:202698694 5'GT 202698694 Upstream 47bp
chr17 17957509 17957509 1 + C T LUSC 17957507 + 17957487 17957527 41 AAAAACACCCTTTCTTAACTCGCAAGTGGGATGCAGATGAA AAAAACACCCTTTCTTAACTCGTAAGTGGGATGCAGATGAA < 41bp 0.762185036878125 0.477416707441421 0.22990277 0.19587839 prediction 0.52437007375625 Functional Loss - GID4 ENSG00000141034 CDS Human protein_coding chr17:17957507 chr17:17957509 synonymous SNV . 0 23 hm5C_associated_SNPs_61698 0 0 1 0 2 GID4 chr17:17957441 3'AG 17957441 Downstream 69bp
chr17 17957509 17957509 1 + C T LUSC 17957507 + 17957487 17957527 41 AAAAACACCCTTTCTTAACTCGCAAGTGGGATGCAGATGAA AAAAACACCCTTTCTTAACTCGTAAGTGGGATGCAGATGAA < 41bp 0.762185036878125 0.477416707441421 0.22990277 0.19587839 prediction 0.52437007375625 Functional Loss - GID4 ENSG00000141034 CDS Human protein_coding chr17:17957507 chr17:17957509 synonymous SNV . 0 23 hm5C_associated_SNPs_61698 0 0 1 0 2 GID4 chr17:17957548 5'GT 17957548 Upstream 40bp
chr19 15640566 15640566 1 + A C UCEC 15640562 + 15640542 15640582 41 TTCAAGATGAGAAGAAGGTACTGGACAACATGCACCATGTA TTCAAGATGAGAAGAAGGTACTGGCCAACATGCACCATGTA < 41bp 0.762170601838899 0.345109322020026 0.27607816 0.30926332 prediction 0.524341203677798 Functional Loss - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15640562 chr19:15640566 nonsynonymous SNV 0.858 0 25 hm5C_associated_SNPs_61700 0 0 0 0 2 CYP4F22 chr19:15640520 3'AG 15640520 Downstream 47bp
chr19 15640566 15640566 1 + A C UCEC 15640562 + 15640542 15640582 41 TTCAAGATGAGAAGAAGGTACTGGACAACATGCACCATGTA TTCAAGATGAGAAGAAGGTACTGGCCAACATGCACCATGTA < 41bp 0.762170601838899 0.345109322020026 0.27607816 0.30926332 prediction 0.524341203677798 Functional Loss - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15640562 chr19:15640566 nonsynonymous SNV 0.858 0 25 hm5C_associated_SNPs_61700 0 0 0 0 2 CYP4F22 chr19:15640664 5'GT 15640664 Upstream 99bp
chr17 79991387 79991387 1 + C T UCEC 79991385 + 79991365 79991405 41 TGGGCACCAAGCTGGACCTCCGCGACGACAAGGACACCATT TGGGCACCAAGCTGGACCTCCGTGACGACAAGGACACCATT < 41bp 0.763017584516985 0.500854599744647 0.3367547 0.1540451 prediction 0.524325969544677 Functional Loss - RAC3 ENSG00000169750 CDS Human protein_coding chr17:79991385 chr17:79991387 synonymous SNV . 0 23 hm5C_associated_SNPs_61702 0 0 1 0 2 RAC3 chr17:79991316 3'AG 79991316 Downstream 72bp
chr17 79991387 79991387 1 + C T UCEC 79991385 + 79991365 79991405 41 TGGGCACCAAGCTGGACCTCCGCGACGACAAGGACACCATT TGGGCACCAAGCTGGACCTCCGTGACGACAAGGACACCATT < 41bp 0.763017584516985 0.500854599744647 0.3367547 0.1540451 prediction 0.524325969544677 Functional Loss - RAC3 ENSG00000169750 CDS Human protein_coding chr17:79991385 chr17:79991387 synonymous SNV . 0 23 hm5C_associated_SNPs_61702 0 0 1 0 2 RAC3 chr17:79991475 5'GT 79991475 Upstream 89bp
chr17 79503966 79503966 1 + G C BLCA 79503965 + 79503945 79503985 41 TGCAGCGACGGCGAACGCGCCGAGGACTTCGTCTTCGAGTT TGCAGCGACGGCGAACGCGCCCAGGACTTCGTCTTCGAGTT < 41bp 0.834459846727482 0.57229867534018 0.727177 0.29089463 prediction 0.524322342774604 Functional Loss - FSCN2 ENSG00000186765 CDS Human protein_coding chr17:79503965 chr17:79503966 nonsynonymous SNV 0.284 3 22 hm5C_associated_SNPs_61703 0 0 0 0 1 FSCN2 chr17:79503901 3'AG 79503901 Downstream 66bp
chr1 170135711 170135711 1 + C T UCEC 170135709 + 170135689 170135729 41 GGATAGGAAGGGTCAGCAAACACGTCTTATTGCCTGTTTTC GGATAGGAAGGGTCAGCAAACATGTCTTATTGCCTGTTTTC < 41bp 0.764425528390016 0.502282535887027 0.25472173 0.18643004 prediction 0.524285985005977 Functional Loss - METTL11B ENSG00000203740 CDS Human protein_coding chr1:170135709 chr1:170135711 synonymous SNV . 0 23 hm5C_associated_SNPs_61706 0 0 0 0 1 METTL11B chr1:170135643 3'AG 170135643 Downstream 69bp
chr6 37418062 37418062 1 + A T UCEC 37418058 + 37418038 37418078 41 TGAGCAGGTGTCATGGTTTCCAGAATGTACCACTGAAATTC TGAGCAGGTGTCATGGTTTCCAGATTGTACCACTGAAATTC < 41bp 0.762137159596623 0.442826001843133 0.22423822 0.3048926 prediction 0.524274319193246 Functional Loss - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37418058 chr6:37418062 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_61710 0 0 1 0 2 CMTR1 chr6:37418027 3'AG 37418027 Downstream 36bp
chr6 37418062 37418062 1 + A T UCEC 37418058 + 37418038 37418078 41 TGAGCAGGTGTCATGGTTTCCAGAATGTACCACTGAAATTC TGAGCAGGTGTCATGGTTTCCAGATTGTACCACTGAAATTC < 41bp 0.762137159596623 0.442826001843133 0.22423822 0.3048926 prediction 0.524274319193246 Functional Loss - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37418058 chr6:37418062 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_61710 0 0 1 0 2 CMTR1 chr6:37418119 5'GT 37418119 Upstream 58bp
chr12 54914932 54914932 1 + C T rs12423227 54914930 + 54914910 54914950 41 ACCTCAAGAACCATGGTCTTCACCACTGCAACTCCTTCCTG ACCTCAAGAACCATGGTCTTCATCACTGCAACTCCTTCCTG < 41bp 0.808240148324246 0.546116047100368 0.026591241 0.13433123 prediction 0.524248202447755 Functional Loss - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54914930 chr12:54914932 synonymous SNV . 0 23 hm5C_associated_SNPs_61712 0 0 0 0 2 NCKAP1L chr12:54914903 3'AG 54914903 Downstream 30bp
chr12 54914932 54914932 1 + C T rs12423227 54914930 + 54914910 54914950 41 ACCTCAAGAACCATGGTCTTCACCACTGCAACTCCTTCCTG ACCTCAAGAACCATGGTCTTCATCACTGCAACTCCTTCCTG < 41bp 0.808240148324246 0.546116047100368 0.026591241 0.13433123 prediction 0.524248202447755 Functional Loss - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54914930 chr12:54914932 synonymous SNV . 0 23 hm5C_associated_SNPs_61712 0 0 0 0 2 NCKAP1L chr12:54915022 5'GT 54915022 Upstream 91bp
chr12 100926246 100926246 1 + G T LUSC 100926243 + 100926223 100926263 41 GTTTCTCCCACAGGTTTCTTCAGGAGAAGCATTACCAAAAA GTTTCTCCCACAGGTTTCTTCAGTAGAAGCATTACCAAAAA < 41bp 0.899543812195077 0.637435024836991 0.5650809 0.08227819 prediction 0.524217574716172 Functional Loss - NR1H4 ENSG00000012504 CDS Human protein_coding chr12:100926243 chr12:100926246 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_61714 0 0 0 1 1 NR1H4 chr12:100926236 3'AG 100926236 Downstream 11bp
chrX 134990652 134990652 1 + C T SKCM 134990650 + 134990630 134990670 41 TTCTAGATGCTACCGTCAATCACCATGTCCATGAAGCAAGG TTCTAGATGCTACCGTCAATCATCATGTCCATGAAGCAAGG < 41bp 0.782458781145386 0.520359737716755 0.05783844 0.032688826 prediction 0.524198086857262 Functional Loss - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134990650 chrX:134990652 synonymous SNV . 0 23 hm5C_associated_SNPs_61715 0 0 0 0 1 SAGE1 chrX:134990636 3'AG 134990636 Downstream 17bp
chr7 150731630 150731630 1 + C T rs114212581 150731628 + 150731608 150731648 41 GGTACCTGGTGCTGCTGTCCCACGTTGGCGAGCGCATGGCT GGTACCTGGTGCTGCTGTCCCATGTTGGCGAGCGCATGGCT < 41bp 0.769197379695026 0.507107170024909 0.026459366 0.02959764 prediction 0.524180419340234 Functional Loss - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150731628 chr7:150731630 synonymous SNV . 0 23 hm5C_associated_SNPs_61716 0 0 1 0 2 ABCB8 chr7:150731592 3'AG 150731592 Downstream 39bp
chr7 150731630 150731630 1 + C T rs114212581 150731628 + 150731608 150731648 41 GGTACCTGGTGCTGCTGTCCCACGTTGGCGAGCGCATGGCT GGTACCTGGTGCTGCTGTCCCATGTTGGCGAGCGCATGGCT < 41bp 0.769197379695026 0.507107170024909 0.026459366 0.02959764 prediction 0.524180419340234 Functional Loss - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150731628 chr7:150731630 synonymous SNV . 0 23 hm5C_associated_SNPs_61716 0 0 1 0 2 ABCB8 chr7:150731686 5'GT 150731686 Upstream 57bp
chr19 1220699 1220699 1 + G T LUAD 1220696 + 1220676 1220716 41 TCCGGCTTCAAGGTGGACATCTGGTCGGCTGGGGTCACCCT TCCGGCTTCAAGGTGGACATCTGTTCGGCTGGGGTCACCCT < 41bp 0.762076355007274 0.367488597292287 0.31122488 0.29827273 prediction 0.524152710014548 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1220696 chr19:1220699 nonsynonymous SNV 0.983 5 24 hm5C_associated_SNPs_61719 0 0 1 0 1 STK11 chr19:1220716 5'GT 1220716 Upstream 18bp
chr20 30419617 30419617 1 + G T LUSC 30419614 + 30419594 30419634 41 ACCTTTGAGGCCGTATCAGACGAGGCCAAAGACTTTGTCTC ACCTTTGAGGCCGTATCAGACGATGCCAAAGACTTTGTCTC < 41bp 0.762076018398999 0.37343653211849 0.9312004 0.3397587 prediction 0.524152036797998 Functional Loss - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30419614 chr20:30419617 nonsynonymous SNV 0.894 0 24 hm5C_associated_SNPs_61720 0 0 0 0 1 MYLK2 chr20:30419658 5'GT 30419658 Upstream 42bp
chr3 12046364 12046364 1 + G C rs2923857 12046360 + 12046340 12046380 41 GCTGGCCTGGTGGACGCGCCCGGTGCCGCGCCGGCAGCCGC GCTGGCCTGGTGGACGCGCCCGGTCCCGCGCCGGCAGCCGC < 41bp 0.788734759558419 0.526659705067206 0.5790955 0.34362525 prediction 0.524150108982427 Functional Loss - SYN2 ENSG00000157152 ncRNA_exonic Human protein_coding chr3:12046360 chr3:12046364 . . 0 25 hm5C_associated_SNPs_61721 0 0 0 0 1 SYN2 chr3:12046428 5'GT 12046428 Upstream 65bp
chr18 77891008 77891008 1 + G T GBM 77891005 + 77890985 77891025 41 GGACCTTAAAGGCTTTGATCCAGGAGAGAAATACTTTCATA GGACCTTAAAGGCTTTGATCCAGTAGAGAAATACTTTCATA < 41bp 0.76207032027904 0.380874320723404 0.6449653 0.17825496 prediction 0.524140640558081 Functional Loss - ADNP2 ENSG00000101544 CDS Human protein_coding chr18:77891005 chr18:77891008 nonsynonymous SNV 0.947 4 24 hm5C_associated_SNPs_61723 0 0 1 0 2 ADNP2 chr18:77890986 3'AG 77890986 Downstream 23bp
chr18 77891008 77891008 1 + G T GBM 77891005 + 77890985 77891025 41 GGACCTTAAAGGCTTTGATCCAGGAGAGAAATACTTTCATA GGACCTTAAAGGCTTTGATCCAGTAGAGAAATACTTTCATA < 41bp 0.76207032027904 0.380874320723404 0.6449653 0.17825496 prediction 0.524140640558081 Functional Loss - ADNP2 ENSG00000101544 CDS Human protein_coding chr18:77891005 chr18:77891008 nonsynonymous SNV 0.947 4 24 hm5C_associated_SNPs_61723 0 0 1 0 2 ADNP2 chr18:77891075 5'GT 77891075 Upstream 68bp
chr5 148637907 148637907 1 + G C GBM 148637903 + 148637883 148637923 41 AGTCTTTGGCATGACCATCTCTGAGTTTGACCGGCTGGCCC AGTCTTTGGCATGACCATCTCTGACTTTGACCGGCTGGCCC < 41bp 0.782273760727157 0.520210443307257 0.20603251 0.19930771 prediction 0.5241266348398 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148637903 chr5:148637907 nonsynonymous SNV 0.994 3 25 hm5C_associated_SNPs_61724 0 0 1 0 1 ABLIM3 chr5:148637854 3'AG 148637854 Downstream 54bp
chr9 95773513 95773513 1 + T C UCEC 95773512 + 95773492 95773532 41 GCAGGGTCCTTGGAGCTCATCTCCACAGCCGCCAACCACTC GCAGGGTCCTTGGAGCTCATCCCCACAGCCGCCAACCACTC < 41bp 0.790877826178568 0.528817105301877 0.97085273 0.15718794 prediction 0.524121441753384 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95773512 chr9:95773513 nonsynonymous SNV 0.985 3 22 hm5C_associated_SNPs_61726 0 0 0 0 1 FGD3 chr9:95773554 5'GT 95773554 Upstream 42bp
chr19 11130284 11130284 1 + A T SKCM 11130280 + 11130260 11130300 41 CTTGCAGGGATCCCCAGCAGCAAGACGGGCCTTTGTCCCCC CTTGCAGGGATCCCCAGCAGCAAGTCGGGCCTTTGTCCCCC < 41bp 0.762056323095074 0.467933851894451 0.7522077 0.30991375 prediction 0.524112646190148 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11130280 chr19:11130284 nonsynonymous SNV 0.726 5 25 hm5C_associated_SNPs_61727 0 0 1 0 2 SMARCA4 chr19:11130267 3'AG 11130267 Downstream 18bp
chr19 11130284 11130284 1 + A T SKCM 11130280 + 11130260 11130300 41 CTTGCAGGGATCCCCAGCAGCAAGACGGGCCTTTGTCCCCC CTTGCAGGGATCCCCAGCAGCAAGTCGGGCCTTTGTCCCCC < 41bp 0.762056323095074 0.467933851894451 0.7522077 0.30991375 prediction 0.524112646190148 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11130280 chr19:11130284 nonsynonymous SNV 0.726 5 25 hm5C_associated_SNPs_61727 0 0 1 0 2 SMARCA4 chr19:11130377 5'GT 11130377 Upstream 94bp
chr3 38401858 38401858 1 + G C rs148604148 38401854 + 38401834 38401874 41 CAGGGTGGTGTTCATGTGCACAAGGATGGGCTGACGGTCAC CAGGGTGGTGTTCATGTGCACAAGCATGGGCTGACGGTCAC < 41bp 0.762052971409982 0.472548103552098 0.44401547 0.21664825 prediction 0.524105942819963 Functional Loss - XYLB ENSG00000093217 CDS Human protein_coding chr3:38401854 chr3:38401858 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_61731 0 0 1 0 1 XYLB chr3:38401899 5'GT 38401899 Upstream 42bp
chr9 117087381 117087381 1 + C T SKCM 117087379 + 117087359 117087399 41 TGGGAGAGTTCTACGAAGCTCTCGACTGCTTGCGCATTCCC TGGGAGAGTTCTACGAAGCTCTTGACTGCTTGCGCATTCCC < 41bp 0.762047191253638 0.493441336030057 0.7765126 0.21431902 prediction 0.524094382507276 Functional Loss - ORM1 ENSG00000229314 CDS Human protein_coding chr9:117087379 chr9:117087381 synonymous SNV . 0 23 hm5C_associated_SNPs_61732 0 0 1 0 2 ORM1 chr9:117087329 3'AG 117087329 Downstream 53bp
chr9 117087381 117087381 1 + C T SKCM 117087379 + 117087359 117087399 41 TGGGAGAGTTCTACGAAGCTCTCGACTGCTTGCGCATTCCC TGGGAGAGTTCTACGAAGCTCTTGACTGCTTGCGCATTCCC < 41bp 0.762047191253638 0.493441336030057 0.7765126 0.21431902 prediction 0.524094382507276 Functional Loss - ORM1 ENSG00000229314 CDS Human protein_coding chr9:117087379 chr9:117087381 synonymous SNV . 0 23 hm5C_associated_SNPs_61732 0 0 1 0 2 ORM1 chr9:117087432 5'GT 117087432 Upstream 52bp
chr15 80452195 80452195 1 + G T READ 80452193 + 80452173 80452213 41 TCTGTGAGCCAAGCCAGGCTCAGAGATGACACCGAACTTCG TCTGTGAGCCAAGCCAGGCTCATAGATGACACCGAACTTCG < 41bp 0.762037675275049 0.410193711068121 0.6998673 0.063958526 prediction 0.524075350550097 Functional Loss - FAH ENSG00000103876 CDS Human protein_coding chr15:80452193 chr15:80452195 nonsynonymous SNV 0.816 3 23 hm5C_associated_SNPs_61734 0 0 0 0 2 FAH chr15:80452098 3'AG 80452098 Downstream 98bp
chr15 80452195 80452195 1 + G T READ 80452193 + 80452173 80452213 41 TCTGTGAGCCAAGCCAGGCTCAGAGATGACACCGAACTTCG TCTGTGAGCCAAGCCAGGCTCATAGATGACACCGAACTTCG < 41bp 0.762037675275049 0.410193711068121 0.6998673 0.063958526 prediction 0.524075350550097 Functional Loss - FAH ENSG00000103876 CDS Human protein_coding chr15:80452193 chr15:80452195 nonsynonymous SNV 0.816 3 23 hm5C_associated_SNPs_61734 0 0 0 0 2 FAH chr15:80452219 5'GT 80452219 Upstream 25bp
chr3 49049535 49049535 1 + G T UCEC 49049533 + 49049513 49049553 41 CCAGCTCTTGGTCTGGTACCCAGCAACTGCCTTAGCAGACA CCAGCTCTTGGTCTGGTACCCATCAACTGCCTTAGCAGACA < 41bp 0.762029619889748 0.426729993421 0.48479587 0.15130737 prediction 0.524059239779497 Functional Loss - WDR6 ENSG00000178252 CDS Human protein_coding chr3:49049533 chr3:49049535 nonsynonymous SNV 0.870 1 23 hm5C_associated_SNPs_61736 0 0 1 0 1 WDR6 chr3:49049455 3'AG 49049455 Downstream 81bp
chr12 32145333 32145333 1 + C T COAD 32145331 + 32145311 32145351 41 GATAATGTTAATTCAAGACTCTCGAAGAGAAGCTTCAGTGC GATAATGTTAATTCAAGACTCTTGAAGAGAAGCTTCAGTGC < 41bp 0.763138955988581 0.501111468981101 0.58736014 0.1827732 prediction 0.524054974014959 Functional Loss - KIAA1551 ENSG00000174718 CDS Human protein_coding chr12:32145331 chr12:32145333 nonsynonymous SNV 0.048 0 23 hm5C_associated_SNPs_61737 0 0 1 0 1 KIAA1551 chr12:32145312 3'AG 32145312 Downstream 22bp
chr1 101702546 101702546 1 + G C rs4987248 101702545 + 101702525 101702565 41 GGAGGGAGGGGACCCCGACTCGAGTAAGTTTGCGAGAGCAC GGAGGGAGGGGACCCCGACTCCAGTAAGTTTGCGAGAGCAC < 41bp 0.793101733697362 0.531094529751748 0.81002474 0.24529564 prediction 0.524014407891229 Functional Loss - S1PR1 ENSG00000170989 UTR5 Human protein_coding chr1:101702545 chr1:101702546 . . 0 22 hm5C_associated_SNPs_61742 0 0 0 0 1 S1PR1 chr1:101702547 5'GT 101702547 Upstream 2bp
chr13 37582916 37582916 1 + G T PAAD 37582913 + 37582893 37582933 41 AGAGGAGGAACATCTGGCAACAGGAACCTTAACAATAGTAA AGAGGAGGAACATCTGGCAACAGTAACCTTAACAATAGTAA < 41bp 0.761998449869553 0.399593908141998 0.109128624 0.069087535 prediction 0.523996899739106 Functional Loss - EXOSC8 ENSG00000120699 CDS Human protein_coding chr13:37582913 chr13:37582916 nonsynonymous SNV 0.955 4 24 hm5C_associated_SNPs_61746 0 0 1 0 1 EXOSC8 chr13:37582866 3'AG 37582866 Downstream 51bp
chr6 46797120 46797120 1 + C T COAD 46797118 + 46797098 46797138 41 GGCTACTTCATGCAGTTCAGCACCAGCTCGGGGTCCGCGGA GGCTACTTCATGCAGTTCAGCATCAGCTCGGGGTCCGCGGA < 41bp 0.761995932720693 0.485973860981273 0.21963319 0.14242813 prediction 0.523991865441385 Functional Loss - MEP1A ENSG00000112818 CDS Human protein_coding chr6:46797118 chr6:46797120 nonsynonymous SNV 0.149 4 23 hm5C_associated_SNPs_61748 0 0 0 0 1 MEP1A chr6:46797093 3'AG 46797093 Downstream 28bp
chr10 134941918 134941918 1 + G T LUAD 134941915 + 134941895 134941935 41 TGGTCACCTGTGTGTACTTCCTGGGCACCTACGTGCAGCTG TGGTCACCTGTGTGTACTTCCTGTGCACCTACGTGCAGCTG < 41bp 0.761976054700071 0.380625968037432 0.27657998 0.01577884 prediction 0.523952109400142 Functional Loss - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134941915 chr10:134941918 nonsynonymous SNV 0.844 0 24 hm5C_associated_SNPs_61752 0 0 0 0 1 ADGRA1 chr10:134941833 3'AG 134941833 Downstream 86bp
chr4 83956394 83956394 1 + G C LUSC 83956393 + 83956373 83956413 41 GAAAGATGGCGGCAGCCGTGCGACAGGATTTGGCCCAGCTC GAAAGATGGCGGCAGCCGTGCCACAGGATTTGGCCCAGCTC < 41bp 0.829840811784096 0.567884075243846 0.41775894 0.3663656 prediction 0.5239134730805 Functional Loss - COPS4 ENSG00000138663 CDS Human protein_coding chr4:83956393 chr4:83956394 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_61758 0 0 1 0 1 COPS4 chr4:83956451 5'GT 83956451 Upstream 58bp
chr14 90730172 90730172 1 + C T UCEC 90730170 + 90730150 90730190 41 GATCTGCTGGAACCTGGCTGCTCGGTCCTGCTCAACCACAA GATCTGCTGGAACCTGGCTGCTTGGTCCTGCTCAACCACAA < 41bp 0.799825780942928 0.537876271396518 0.15825036 0.106633306 prediction 0.52389901909282 Functional Loss - PSMC1 ENSG00000100764 CDS Human protein_coding chr14:90730170 chr14:90730172 nonsynonymous SNV 0.645 1 23 hm5C_associated_SNPs_61759 0 0 0 0 1 PSMC1 chr14:90730191 5'GT 90730191 Upstream 20bp
chr20 34207148 34207148 1 + C T rs199561262 34207146 + 34207126 34207166 41 TCGACCTGCAGAAGACATCCCACGATTACGCAGACAGGAAC TCGACCTGCAGAAGACATCCCATGATTACGCAGACAGGAAC < 41bp 0.800540449940877 0.538602283678775 0.09543297 0.10349715 prediction 0.523876332524204 Functional Loss - SPAG4 ENSG00000061656 CDS Human protein_coding chr20:34207146 chr20:34207148 synonymous SNV . 0 23 hm5C_associated_SNPs_61761 0 0 1 0 2 SPAG4 chr20:34207117 3'AG 34207117 Downstream 32bp
chr20 34207148 34207148 1 + C T rs199561262 34207146 + 34207126 34207166 41 TCGACCTGCAGAAGACATCCCACGATTACGCAGACAGGAAC TCGACCTGCAGAAGACATCCCATGATTACGCAGACAGGAAC < 41bp 0.800540449940877 0.538602283678775 0.09543297 0.10349715 prediction 0.523876332524204 Functional Loss - SPAG4 ENSG00000061656 CDS Human protein_coding chr20:34207146 chr20:34207148 synonymous SNV . 0 23 hm5C_associated_SNPs_61761 0 0 1 0 2 SPAG4 chr20:34207232 5'GT 34207232 Upstream 85bp
chr4 148453732 148453732 1 + C T SKCM 148453730 + 148453710 148453750 41 GTAACTGCCATTGAAATTGTCTCCATCTGGATCCTGTCCTT GTAACTGCCATTGAAATTGTCTTCATCTGGATCCTGTCCTT < 41bp 0.761937719249644 0.456507518292923 0.95009315 0.1644594 prediction 0.523875438499289 Functional Loss - EDNRA ENSG00000151617 CDS Human protein_coding chr4:148453730 chr4:148453732 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_61762 0 0 0 1 1 EDNRA chr4:148453658 3'AG 148453658 Downstream 75bp
chr17 33510451 33510451 1 + G T UCEC 33510449 + 33510429 33510469 41 GTTCCTGCCTCCCACAGGTACAGGAAAGGTTCTTGGCTGAC GTTCCTGCCTCCCACAGGTACATGAAAGGTTCTTGGCTGAC < 41bp 0.761936209409687 0.416675936386367 0.89261186 0.3271867 prediction 0.523872418819374 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33510449 chr17:33510451 nonsynonymous SNV 0.977 3 23 hm5C_associated_SNPs_61763 0 0 0 0 1 UNC45B chr17:33510446 3'AG 33510446 Downstream 6bp
chr12 95869859 95869859 1 + A T rs200823558 95869855 + 95869835 95869875 41 TATTTTGATCAGCAGGGGAACAGGAACCTGATAAAGAATCA TATTTTGATCAGCAGGGGAACAGGTACCTGATAAAGAATCA < 41bp 0.761923682120663 0.457069687565448 0.4744586 0.42233637 prediction 0.523847364241327 Functional Loss - METAP2 ENSG00000111142 CDS Human protein_coding chr12:95869855 chr12:95869859 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_61764 0 0 1 0 3 METAP2 chr12:95869847 3'AG 95869847 Downstream 13bp
chr12 95869859 95869859 1 + A T rs200823558 95869855 + 95869835 95869875 41 TATTTTGATCAGCAGGGGAACAGGAACCTGATAAAGAATCA TATTTTGATCAGCAGGGGAACAGGTACCTGATAAAGAATCA < 41bp 0.761923682120663 0.457069687565448 0.4744586 0.42233637 prediction 0.523847364241327 Functional Loss - METAP2 ENSG00000111142 CDS Human protein_coding chr12:95869855 chr12:95869859 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_61764 0 0 1 0 3 METAP2 chr12:95869850 3'AG 95869850 Downstream 10bp
chr12 95869859 95869859 1 + A T rs200823558 95869855 + 95869835 95869875 41 TATTTTGATCAGCAGGGGAACAGGAACCTGATAAAGAATCA TATTTTGATCAGCAGGGGAACAGGTACCTGATAAAGAATCA < 41bp 0.761923682120663 0.457069687565448 0.4744586 0.42233637 prediction 0.523847364241327 Functional Loss - METAP2 ENSG00000111142 CDS Human protein_coding chr12:95869855 chr12:95869859 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_61764 0 0 1 0 3 METAP2 chr12:95869954 5'GT 95869954 Upstream 96bp
chr20 1210585 1210585 1 + G T UCEC 1210583 + 1210563 1210603 41 GGAGTTGTTCGAATCTATAACAGGAAGGCAAAATATCTTTT GGAGTTGTTCGAATCTATAACATGAAGGCAAAATATCTTTT < 41bp 0.854598306929718 0.592677517822895 0.48879266 0.1732992 prediction 0.523841578213647 Functional Loss - RAD21L1 ENSG00000244588 CDS Human protein_coding chr20:1210583 chr20:1210585 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_61765 0 0 0 0 2 RAD21L1 chr20:1210524 3'AG 1210524 Downstream 62bp
chr20 1210585 1210585 1 + G T UCEC 1210583 + 1210563 1210603 41 GGAGTTGTTCGAATCTATAACAGGAAGGCAAAATATCTTTT GGAGTTGTTCGAATCTATAACATGAAGGCAAAATATCTTTT < 41bp 0.854598306929718 0.592677517822895 0.48879266 0.1732992 prediction 0.523841578213647 Functional Loss - RAD21L1 ENSG00000244588 CDS Human protein_coding chr20:1210583 chr20:1210585 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_61765 0 0 0 0 2 RAD21L1 chr20:1210653 5'GT 1210653 Upstream 69bp
chr21 42629179 42629179 1 + C T UCEC 42629177 + 42629157 42629197 41 AATGCGCTGGTGATCGGTGCCACGGTGATGGAGGGCTTCTA AATGCGCTGGTGATCGGTGCCATGGTGATGGAGGGCTTCTA < 41bp 0.761920115308855 0.489908078995062 0.20655066 0.13274744 prediction 0.52384023061771 Functional Loss - BACE2 ENSG00000182240 CDS Human protein_coding chr21:42629177 chr21:42629179 nonsynonymous SNV 0.598 4 23 hm5C_associated_SNPs_61766 0 0 1 0 2 BACE2 chr21:42629085 3'AG 42629085 Downstream 95bp
chr21 42629179 42629179 1 + C T UCEC 42629177 + 42629157 42629197 41 AATGCGCTGGTGATCGGTGCCACGGTGATGGAGGGCTTCTA AATGCGCTGGTGATCGGTGCCATGGTGATGGAGGGCTTCTA < 41bp 0.761920115308855 0.489908078995062 0.20655066 0.13274744 prediction 0.52384023061771 Functional Loss - BACE2 ENSG00000182240 CDS Human protein_coding chr21:42629177 chr21:42629179 nonsynonymous SNV 0.598 4 23 hm5C_associated_SNPs_61766 0 0 1 0 2 BACE2 chr21:42629253 5'GT 42629253 Upstream 75bp
chr3 179082112 179082112 1 + G T LUSC 179082110 + 179082090 179082130 41 GCACAGATGTCACTACAGAGCTGGATAGCTGGATTGATAAG GCACAGATGTCACTACAGAGCTTGATAGCTGGATTGATAAG < 41bp 0.858434260757203 0.596523222850233 0.095722884 0.018594742 prediction 0.52382207581394 Functional Loss - MFN1 ENSG00000171109 CDS Human protein_coding chr3:179082110 chr3:179082112 synonymous SNV . 0 23 hm5C_associated_SNPs_61768 0 0 1 0 2 MFN1 chr3:179082085 3'AG 179082085 Downstream 28bp
chr3 179082112 179082112 1 + G T LUSC 179082110 + 179082090 179082130 41 GCACAGATGTCACTACAGAGCTGGATAGCTGGATTGATAAG GCACAGATGTCACTACAGAGCTTGATAGCTGGATTGATAAG < 41bp 0.858434260757203 0.596523222850233 0.095722884 0.018594742 prediction 0.52382207581394 Functional Loss - MFN1 ENSG00000171109 CDS Human protein_coding chr3:179082110 chr3:179082112 synonymous SNV . 0 23 hm5C_associated_SNPs_61768 0 0 1 0 2 MFN1 chr3:179082193 5'GT 179082193 Upstream 82bp
chr20 57875877 57875877 1 + G T CESC 57875875 + 57875855 57875895 41 CTGATCTAGGTTCATGGAGCCGGGGCTGTGGCTCCTTTTCG CTGATCTAGGTTCATGGAGCCGTGGCTGTGGCTCCTTTTCG < 41bp 0.883250415144299 0.621357109035747 0.92732537 0.39970395 prediction 0.523786612217103 Functional Loss - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57875875 chr20:57875877 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_61770 0 0 0 0 1 EDN3 chr20:57875919 5'GT 57875919 Upstream 43bp
chr7 6806439 6806439 1 + C T rs561811778 6806437 + 6806417 6806457 41 AGTGGGAAGACAACATGCGCCACGGGGAGGGGAGGATGAGG AGTGGGAAGACAACATGCGCCATGGGGAGGGGAGGATGAGG < 41bp 0.761891072132764 0.497688387831075 0.30699414 0.26539865 prediction 0.523782144265528 Functional Loss - RSPH10B;RSPH10B2 ENSG00000169402 CDS Human protein_coding chr7:6806437 chr7:6806439 synonymous SNV . 0 23 hm5C_associated_SNPs_61771 0 0 0 0 2 RSPH10B;RSPH10B2 chr7:6806388 3'AG 6806388 Downstream 52bp
chr7 6806439 6806439 1 + C T rs561811778 6806437 + 6806417 6806457 41 AGTGGGAAGACAACATGCGCCACGGGGAGGGGAGGATGAGG AGTGGGAAGACAACATGCGCCATGGGGAGGGGAGGATGAGG < 41bp 0.761891072132764 0.497688387831075 0.30699414 0.26539865 prediction 0.523782144265528 Functional Loss - RSPH10B;RSPH10B2 ENSG00000169402 CDS Human protein_coding chr7:6806437 chr7:6806439 synonymous SNV . 0 23 hm5C_associated_SNPs_61771 0 0 0 0 2 RSPH10B;RSPH10B2 chr7:6806508 5'GT 6806508 Upstream 70bp
chr1 110766455 110766455 1 + G T LUAD 110766453 + 110766433 110766473 41 AGTCTGAGGAGACTTCCCCCCGGGACAGCACCTGCAGTGAT AGTCTGAGGAGACTTCCCCCCGTGACAGCACCTGCAGTGAT < 41bp 0.868392134704001 0.606505157302823 0.8748932 0.3205939 prediction 0.523773954802355 Functional Loss - KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110766453 chr1:110766455 synonymous SNV . 0 23 hm5C_associated_SNPs_61772 0 0 1 0 1 KCNC4 chr1:110766522 5'GT 110766522 Upstream 68bp
chr6 159692369 159692369 1 + C T COAD 159692367 + 159692347 159692387 41 TTGCCCTTCCAGGCTACTATCGCCAGTATCGTCAGGAGCCT TTGCCCTTCCAGGCTACTATCGTCAGTATCGTCAGGAGCCT < 41bp 0.761870134087201 0.499218880663005 0.86932796 0.6380446 prediction 0.523740268174401 Functional Loss - FNDC1 ENSG00000164694 CDS Human protein_coding chr6:159692367 chr6:159692369 synonymous SNV . 0 23 hm5C_associated_SNPs_61776 0 0 0 0 1 FNDC1 chr6:159692359 3'AG 159692359 Downstream 11bp
chr11 77911745 77911745 1 + C T rs147270370 77911743 + 77911723 77911763 41 GCCTCTCTGGTCAAGGAGGACTCGAACTCGGGGACCAGCTG GCCTCTCTGGTCAAGGAGGACTTGAACTCGGGGACCAGCTG < 41bp 0.80012350999095 0.538257921466069 0.9235722 0.7088356 prediction 0.523731177049761 Functional Loss - USP35 ENSG00000118369 CDS Human protein_coding chr11:77911743 chr11:77911745 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_61778 0 0 1 0 1 USP35 chr11:77911696 3'AG 77911696 Downstream 50bp
chr1 67242971 67242971 1 + G T LUAD 67242968 + 67242948 67242988 41 GGTCAAGGACTTGATGATTCCACGGTATAAACTAATTGTGA GGTCAAGGACTTGATGATTCCACTGTATAAACTAATTGTGA < 41bp 0.761852445764129 0.406942581484215 0.042161733 0.03889239 prediction 0.523704891528258 Functional Loss - TCTEX1D1 ENSG00000152760 CDS Human protein_coding chr1:67242968 chr1:67242971 nonsynonymous SNV 0.684 3 24 hm5C_associated_SNPs_61780 0 0 0 0 1 TCTEX1D1 chr1:67242934 3'AG 67242934 Downstream 38bp
chr12 122481907 122481907 1 + G T LUSC 122481904 + 122481884 122481924 41 GCTGTGCCCAGCGACGGCACCGAGGCCAAGGTGGATGAGGC GCTGTGCCCAGCGACGGCACCGATGCCAAGGTGGATGAGGC < 41bp 0.761828862780353 0.359707336317509 0.3288176 0.04064712 prediction 0.523657725560707 Functional Loss - BCL7A ENSG00000110987 CDS Human protein_coding chr12:122481904 chr12:122481907 nonsynonymous SNV 0.423 0 24 hm5C_associated_SNPs_61782 0 0 1 0 1 BCL7A chr12:122481959 5'GT 122481959 Upstream 53bp
chr2 3660962 3660962 1 + G T COAD 3660959 + 3660939 3660979 41 CGGCCTGGAAGAGTCGGCCCCACGGGAGAAAAAGGTACCTG CGGCCTGGAAGAGTCGGCCCCACTGGAGAAAAAGGTACCTG < 41bp 0.76180996776601 0.474703539611671 0.33634853 0.2890322 prediction 0.52361993553202 Functional Loss - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3660959 chr2:3660962 nonsynonymous SNV 0.926 1 24 hm5C_associated_SNPs_61785 0 0 0 0 2 COLEC11 chr2:3660901 3'AG 3660901 Downstream 62bp
chr2 3660962 3660962 1 + G T COAD 3660959 + 3660939 3660979 41 CGGCCTGGAAGAGTCGGCCCCACGGGAGAAAAAGGTACCTG CGGCCTGGAAGAGTCGGCCCCACTGGAGAAAAAGGTACCTG < 41bp 0.76180996776601 0.474703539611671 0.33634853 0.2890322 prediction 0.52361993553202 Functional Loss - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3660959 chr2:3660962 nonsynonymous SNV 0.926 1 24 hm5C_associated_SNPs_61785 0 0 0 0 2 COLEC11 chr2:3660972 5'GT 3660972 Upstream 11bp
chr9 72785543 72785543 1 + G C STAD 72785539 + 72785519 72785559 41 ACCAAAGGGAGATCACACTACTGGGGTAGGTGAGTTATGCC ACCAAAGGGAGATCACACTACTGGCGTAGGTGAGTTATGCC < 41bp 0.804443765593356 0.542648859590939 0.4304187 0.22167358 prediction 0.523589812004835 Functional Loss - MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72785539 chr9:72785543 synonymous SNV . 0 25 hm5C_associated_SNPs_61790 0 0 0 1 2 MAMDC2 chr9:72785543 5'GT 72785543 Upstream 1bp
chr9 72785543 72785543 1 + G C STAD 72785539 + 72785519 72785559 41 ACCAAAGGGAGATCACACTACTGGGGTAGGTGAGTTATGCC ACCAAAGGGAGATCACACTACTGGCGTAGGTGAGTTATGCC < 41bp 0.804443765593356 0.542648859590939 0.4304187 0.22167358 prediction 0.523589812004835 Functional Loss - MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72785539 chr9:72785543 synonymous SNV . 0 25 hm5C_associated_SNPs_61790 0 0 0 1 2 MAMDC2 chr9:72785547 5'GT 72785547 Upstream 5bp
chr1 15771158 15771158 1 + C T UCEC 15771156 + 15771136 15771176 41 CTGCAGCCCGTGGTGGATCACGCCACGTGCTCCAGGATTGA CTGCAGCCCGTGGTGGATCACGTCACGTGCTCCAGGATTGA < 41bp 0.781660412499794 0.519880006489287 0.23406991 0.15053102 prediction 0.523560812021015 Functional Loss - CTRC ENSG00000162438 CDS Human protein_coding chr1:15771156 chr1:15771158 nonsynonymous SNV 0.479 2 23 hm5C_associated_SNPs_61793 0 0 0 0 2 CTRC chr1:15771101 3'AG 15771101 Downstream 58bp
chr1 15771158 15771158 1 + C T UCEC 15771156 + 15771136 15771176 41 CTGCAGCCCGTGGTGGATCACGCCACGTGCTCCAGGATTGA CTGCAGCCCGTGGTGGATCACGTCACGTGCTCCAGGATTGA < 41bp 0.781660412499794 0.519880006489287 0.23406991 0.15053102 prediction 0.523560812021015 Functional Loss - CTRC ENSG00000162438 CDS Human protein_coding chr1:15771156 chr1:15771158 nonsynonymous SNV 0.479 2 23 hm5C_associated_SNPs_61793 0 0 0 0 2 CTRC chr1:15771246 5'GT 15771246 Upstream 89bp
chr14 62536515 62536515 1 + G T UCEC 62536513 + 62536493 62536533 41 GACACACGGAGAAGATGGCACAGAAGTATCTGCCTGCGAAG GACACACGGAGAAGATGGCACATAAGTATCTGCCTGCGAAG < 41bp 0.761770559652004 0.414181646993515 0.33284324 0.17278695 prediction 0.523541119304008 Functional Loss - SYT16 ENSG00000139973 CDS Human protein_coding chr14:62536513 chr14:62536515 stopgain 0.338 0 23 hm5C_associated_SNPs_61795 0 0 0 0 1 SYT16 chr14:62536533 5'GT 62536533 Upstream 19bp
chr8 6264130 6264130 1 + G C rs2305023 6264126 + 6264106 6264146 41 ACCCCGCGCATGCCCAGTGCCCGCGCGCGCCGCCAGGCTCG ACCCCGCGCATGCCCAGTGCCCGCCCGCGCCGCCAGGCTCG < 41bp 0.761768658353943 0.487932314072635 0.39818814 0.23953807 prediction 0.523537316707886 Functional Loss - MCPH1 ENSG00000246089 ncRNA_exonic Human protein_coding chr8:6264126 chr8:6264130 . . 0 25 hm5C_associated_SNPs_61796 1 0 0 0 1 MCPH1 chr8:6264210 5'GT 6264210 Upstream 81bp
chr15 43444012 43444012 1 + C T UCEC 43444010 + 43443990 43444030 41 ACCGGATTTTTGCTTTTGATCACGACCTCTTTAGCTTTGCA ACCGGATTTTTGCTTTTGATCATGACCTCTTTAGCTTTGCA < 41bp 0.792067260360772 0.530299415274786 0.06210482 0.056376547 prediction 0.523535690171972 Functional Loss - TMEM62 ENSG00000137842 CDS Human protein_coding chr15:43444010 chr15:43444012 synonymous SNV . 0 23 hm5C_associated_SNPs_61797 0 0 0 0 1 TMEM62 chr15:43443988 3'AG 43443988 Downstream 25bp
chr19 4944462 4944462 1 + G T COAD 4944460 + 4944440 4944480 41 CCATGTGGCGGTTCCGAGTCCAGGTACCTGCAGCGTCCCGG CCATGTGGCGGTTCCGAGTCCATGTACCTGCAGCGTCCCGG < 41bp 0.761766345368595 0.415629384570554 0.48660773 0.20635235 prediction 0.523532690737189 Functional Loss - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4944460 chr19:4944462 . 0.981 3 23 hm5C_associated_SNPs_61798 0 0 1 0 1 UHRF1 chr19:4944462 5'GT 4944462 Upstream 1bp
chr21 38114099 38114099 1 + C T UCEC 38114097 + 38114077 38114117 41 TGGGTGTGGGTGCAGAGCTACGCCACCGTGGTGCACAACAG TGGGTGTGGGTGCAGAGCTACGTCACCGTGGTGCACAACAG < 41bp 0.761763895785553 0.487495133688299 0.118590534 0.1377396 prediction 0.523527791571106 Functional Loss - SIM2 ENSG00000159263 CDS Human protein_coding chr21:38114097 chr21:38114099 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_61800 0 0 0 0 1 SIM2 chr21:38114165 5'GT 38114165 Upstream 67bp
chrX 47106583 47106583 1 + C T UCEC 47106581 + 47106561 47106601 41 CTTTTCCTACACCAAGTTCTCCCGAGAGAAGCTGGACACCC CTTTTCCTACACCAAGTTCTCCTGAGAGAAGCTGGACACCC < 41bp 0.788490191964427 0.526726395145167 0.25576258 0.32389265 prediction 0.52352759363852 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47106581 chrX:47106583 stopgain 0.994 0 23 hm5C_associated_SNPs_61801 0 0 1 0 1 USP11 chrX:47106620 5'GT 47106620 Upstream 38bp
chr11 22381014 22381014 1 + G T SKCM 22381012 + 22380992 22381032 41 CCTAAATATGCTAATTCCATCAGCAGCCAGAGTGCATTATG CCTAAATATGCTAATTCCATCATCAGCCAGAGTGCATTATG < 41bp 0.761746904389317 0.428020673055366 0.22100845 0.02870801 prediction 0.523493808778635 Functional Loss - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22381012 chr11:22381014 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_61802 0 0 0 0 1 SLC17A6 chr11:22381073 5'GT 22381073 Upstream 60bp
chr4 90830523 90830523 1 + G T LUAD 90830520 + 90830500 90830540 41 GGTGGGAAAGGACCTTGTGGCTGGACCGGTGGATCCTGTCC GGTGGGAAAGGACCTTGTGGCTGTACCGGTGGATCCTGTCC < 41bp 0.907604556726769 0.645860191381339 0.43949485 0.3795899 prediction 0.52348873069086 Functional Loss - MMRN1 ENSG00000138722 CDS Human protein_coding chr4:90830520 chr4:90830523 nonsynonymous SNV 0.978 4 24 hm5C_associated_SNPs_61804 0 0 0 0 2 MMRN1 chr4:90830427 3'AG 90830427 Downstream 97bp
chr4 90830523 90830523 1 + G T LUAD 90830520 + 90830500 90830540 41 GGTGGGAAAGGACCTTGTGGCTGGACCGGTGGATCCTGTCC GGTGGGAAAGGACCTTGTGGCTGTACCGGTGGATCCTGTCC < 41bp 0.907604556726769 0.645860191381339 0.43949485 0.3795899 prediction 0.52348873069086 Functional Loss - MMRN1 ENSG00000138722 CDS Human protein_coding chr4:90830520 chr4:90830523 nonsynonymous SNV 0.978 4 24 hm5C_associated_SNPs_61804 0 0 0 0 2 MMRN1 chr4:90830546 5'GT 90830546 Upstream 24bp
chr16 29820883 29820883 1 + G T SARC 29820881 + 29820861 29820901 41 GCTTCACCACGGCAGCATACCTGCGCATCCACGCGGTGAAG GCTTCACCACGGCAGCATACCTTCGCATCCACGCGGTGAAG < 41bp 0.761743774233487 0.426547671928639 0.100559026 0.019068003 prediction 0.523487548466975 Functional Loss - MAZ ENSG00000103495 CDS Human protein_coding chr16:29820881 chr16:29820883 synonymous SNV . 0 23 hm5C_associated_SNPs_61805 0 0 1 0 1 MAZ chr16:29820861 3'AG 29820861 Downstream 23bp
chr19 3730413 3730413 1 + G T LUSC 3730411 + 3730391 3730431 41 CAAAGCCAGCCCCTCCAGCCCAGGGCGCCAGGACTCGGATG CAAAGCCAGCCCCTCCAGCCCATGGCGCCAGGACTCGGATG < 41bp 0.885895991989936 0.624154506343414 0.84301543 0.2705414 prediction 0.523482971293044 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3730411 chr19:3730413 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_61806 0 0 0 0 1 TJP3 chr19:3730353 3'AG 3730353 Downstream 61bp
chrX 115584287 115584287 1 + A C UCEC 115584283 + 115584263 115584303 41 TCATGCTTTTAACTTTGGGTCTCGATTCTCAGTTTGCTTCG TCATGCTTTTAACTTTGGGTCTCGCTTCTCAGTTTGCTTCG < 41bp 0.761739842262394 0.350161485284083 0.8709067 0.04947117 prediction 0.523479684524789 Functional Loss - SLC6A14 ENSG00000087916 CDS Human other chrX:115584283 chrX:115584287 nonsynonymous SNV 0.986 3 25 hm5C_associated_SNPs_61807 0 0 1 0 1 SLC6A14 chrX:115584307 5'GT 115584307 Upstream 21bp
chr21 43716300 43716300 1 + C T SARC 43716298 + 43716278 43716318 41 GGGTTCGAAGGGGTCATCCTCTCCATCTATGGCTTAGACCG GGGTTCGAAGGGGTCATCCTCTTCATCTATGGCTTAGACCG < 41bp 0.80849275821562 0.546753765684524 0.9575794 0.06338057 prediction 0.523477985062192 Functional Loss - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43716298 chr21:43716300 nonsynonymous SNV 0.994 5 23 hm5C_associated_SNPs_61808 0 0 0 0 1 ABCG1 chr21:43716274 3'AG 43716274 Downstream 27bp
chr17 55752349 55752349 1 + G C BLCA 55752345 + 55752325 55752365 41 CCCGGCAGGCTCCAACCCGGCGCGGCCCGGAGGCTTCCCGG CCCGGCAGGCTCCAACCCGGCGCGCCCCGGAGGCTTCCCGG < 41bp 0.770287758952053 0.508548841342951 0.34604472 0.10725269 prediction 0.523477835218206 Functional Loss - MSI2 ENSG00000153944 CDS Human protein_coding chr17:55752345 chr17:55752349 synonymous SNV . 0 25 hm5C_associated_SNPs_61809 0 0 1 0 2 MSI2 chr17:55752279 3'AG 55752279 Downstream 71bp
chr17 55752349 55752349 1 + G C BLCA 55752345 + 55752325 55752365 41 CCCGGCAGGCTCCAACCCGGCGCGGCCCGGAGGCTTCCCGG CCCGGCAGGCTCCAACCCGGCGCGCCCCGGAGGCTTCCCGG < 41bp 0.770287758952053 0.508548841342951 0.34604472 0.10725269 prediction 0.523477835218206 Functional Loss - MSI2 ENSG00000153944 CDS Human protein_coding chr17:55752345 chr17:55752349 synonymous SNV . 0 25 hm5C_associated_SNPs_61809 0 0 1 0 2 MSI2 chr17:55752333 3'AG 55752333 Downstream 17bp
chr11 124564263 124564263 1 + G C SKCM 124564262 + 124564242 124564282 41 TCAAAATCCAAGCTGCCTTCCGGGGACACATAGCCAGAGAG TCAAAATCCAAGCTGCCTTCCCGGGACACATAGCCAGAGAG < 41bp 0.833992197274277 0.572260106392933 0.90887564 0.8243336 prediction 0.523464181762689 Functional Loss - SPA17 ENSG00000064199 CDS Human protein_coding chr11:124564262 chr11:124564263 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_61810 0 0 1 0 1 SPA17 chr11:124564199 3'AG 124564199 Downstream 65bp
chr14 36304117 36304117 1 + C T SARC 36304115 + 36304095 36304135 41 AATGTGAAATTCAAGCTTCTCGCCAGCATTGTGAGGTACTG AATGTGAAATTCAAGCTTCTCGTCAGCATTGTGAGGTACTG < 41bp 0.806992272389626 0.545271199568977 0.06429592 0.043693513 prediction 0.523442145641299 Functional Loss - BRMS1L ENSG00000100916 CDS Human protein_coding chr14:36304115 chr14:36304117 synonymous SNV . 0 23 hm5C_associated_SNPs_61812 0 0 0 0 2 BRMS1L chr14:36304050 3'AG 36304050 Downstream 68bp
chr14 36304117 36304117 1 + C T SARC 36304115 + 36304095 36304135 41 AATGTGAAATTCAAGCTTCTCGCCAGCATTGTGAGGTACTG AATGTGAAATTCAAGCTTCTCGTCAGCATTGTGAGGTACTG < 41bp 0.806992272389626 0.545271199568977 0.06429592 0.043693513 prediction 0.523442145641299 Functional Loss - BRMS1L ENSG00000100916 CDS Human protein_coding chr14:36304115 chr14:36304117 synonymous SNV . 0 23 hm5C_associated_SNPs_61812 0 0 0 0 2 BRMS1L chr14:36304129 5'GT 36304129 Upstream 13bp
chr15 99486166 99486166 1 + C T COAD 99486164 + 99486144 99486184 41 CCTTACAGATTTTGGTATGACGCGAGATATCTATGAGACAG CCTTACAGATTTTGGTATGACGTGAGATATCTATGAGACAG < 41bp 0.761712190858972 0.486890180727664 0.34726286 0.35197616 prediction 0.523424381717945 Functional Loss - IGF1R ENSG00000140443 CDS Human protein_coding chr15:99486164 chr15:99486166 stopgain 0.940 1 23 hm5C_associated_SNPs_61813 0 0 1 0 1 IGF1R chr15:99486152 3'AG 99486152 Downstream 15bp
chr4 100208046 100208046 1 + C T GBM 100208044 + 100208024 100208064 41 ACCCCTTCTCCAACACTCTCCACGATGCCGGCTGCCTCATG ACCCCTTCTCCAACACTCTCCATGATGCCGGCTGCCTCATG < 41bp 0.775949438001738 0.514237253623705 0.14617494 0.13421023 prediction 0.523424368756065 Functional Loss - ADH1A ENSG00000187758 CDS Human antisense chr4:100208044 chr4:100208046 nonsynonymous SNV 0.326 4 23 hm5C_associated_SNPs_61814 0 0 0 0 1 LOC100507053 chr4:100207952 3'AG 100207952 Downstream 95bp
chr10 12129567 12129567 1 + A T UCEC 12129563 + 12129543 12129583 41 CACTTTCTGGCCACCAAGTTCTCGACAGTGAAGCGATATGG CACTTTCTGGCCACCAAGTTCTCGTCAGTGAAGCGATATGG < 41bp 0.761670850300009 0.411187357769602 0.32193238 0.18743008 prediction 0.523341700600018 Functional Loss - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12129563 chr10:12129567 nonsynonymous SNV 0.855 1 25 hm5C_associated_SNPs_61818 0 0 1 0 1 DHTKD1 chr10:12129534 3'AG 12129534 Downstream 34bp
chr19 17447903 17447903 1 + A T rs139197632 17447899 + 17447879 17447919 41 CCTGGATCAGGGCGTGGGTTCTCCAGTACTCGTCCCTCCCG CCTGGATCAGGGCGTGGGTTCTCCTGTACTCGTCCCTCCCG < 41bp 0.821924581009821 0.560266225691787 0.94618976 0.23602274 prediction 0.523316710636068 Functional Loss - GTPBP3 ENSG00000130299 intronic Human protein_coding chr19:17447899 chr19:17447903 . . 0 25 hm5C_associated_SNPs_61820 0 0 0 0 1 GTPBP3 chr19:17447966 5'GT 17447966 Upstream 64bp
chr17 55078352 55078352 1 + G T UCEC 55078349 + 55078329 55078369 41 CTGGATCTCATCGTAGATACCATGGGTAGGAATTGACTCTG CTGGATCTCATCGTAGATACCATTGGTAGGAATTGACTCTG < 41bp 0.761653933724926 0.376850080249598 0.66590226 0.17312571 prediction 0.523307867449853 Functional Loss - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55078349 chr17:55078352 nonsynonymous SNV 0.979 1 24 hm5C_associated_SNPs_61821 0 0 1 1 1 SCPEP1 chr17:55078353 5'GT 55078353 Upstream 2bp
chr17 4684105 4684105 1 + G T SARC 4684103 + 4684083 4684123 41 GGTACTGTGTCCGGGGATTGCAGCCGTTCGGGCAGGGGGCA GGTACTGTGTCCGGGGATTGCATCCGTTCGGGCAGGGGGCA < 41bp 0.761642915838918 0.402486095420211 0.8897409 0.5449036 prediction 0.523285831677837 Functional Loss - TM4SF5 ENSG00000142484 CDS Human protein_coding chr17:4684103 chr17:4684105 nonsynonymous SNV 0.061 4 23 hm5C_associated_SNPs_61823 0 0 1 0 1 TM4SF5 chr17:4684084 3'AG 4684084 Downstream 22bp
chr6 100055033 100055033 1 + G T SKCM 100055030 + 100055010 100055050 41 GGCAAGTACCTGTCAGACCGCAGGGAGCCCGGGCCTAAGAA GGCAAGTACCTGTCAGACCGCAGTGAGCCCGGGCCTAAGAA < 41bp 0.761624006877025 0.368338172483825 0.6950182 0.21707126 prediction 0.52324801375405 Functional Loss - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100055030 chr6:100055033 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_61825 0 0 0 0 1 PRDM13 chr6:100055054 5'GT 100055054 Upstream 22bp
chr19 50902284 50902284 1 + A T CESC 50902280 + 50902260 50902300 41 AGGAGCAGGAGGAGGAGGAGCTGCAGTCAGTCCTGGAGGGG AGGAGCAGGAGGAGGAGGAGCTGCTGTCAGTCCTGGAGGGG < 41bp 0.761600865438623 0.437853739905189 0.8738819 0.84993935 prediction 0.523201730877246 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50902280 chr19:50902284 nonsynonymous SNV 0.510 0 25 hm5C_associated_SNPs_61830 0 0 1 0 1 POLD1 chr19:50902310 5'GT 50902310 Upstream 27bp
chr1 94014886 94014886 1 + C T LUAD 94014884 + 94014864 94014904 41 ACCAGGAAGTCCGTGGGCCACCCCAGCAGCATGGTCACCAC ACCAGGAAGTCCGTGGGCCACCTCAGCAGCATGGTCACCAC < 41bp 0.813778004884763 0.552185207497132 0.17388022 0.123405606 prediction 0.523185594775263 Functional Loss - FNBP1L ENSG00000137942 CDS Human protein_coding chr1:94014884 chr1:94014886 synonymous SNV . 0 23 hm5C_associated_SNPs_61832 0 0 1 0 2 FNBP1L chr1:94014835 3'AG 94014835 Downstream 52bp
chr1 94014886 94014886 1 + C T LUAD 94014884 + 94014864 94014904 41 ACCAGGAAGTCCGTGGGCCACCCCAGCAGCATGGTCACCAC ACCAGGAAGTCCGTGGGCCACCTCAGCAGCATGGTCACCAC < 41bp 0.813778004884763 0.552185207497132 0.17388022 0.123405606 prediction 0.523185594775263 Functional Loss - FNBP1L ENSG00000137942 CDS Human protein_coding chr1:94014884 chr1:94014886 synonymous SNV . 0 23 hm5C_associated_SNPs_61832 0 0 1 0 2 FNBP1L chr1:94014983 5'GT 94014983 Upstream 98bp
chrX 69255287 69255287 1 + G T KIRC 69255285 + 69255265 69255305 41 CCCTTCCTGCAGTGCACACGCAGCATCGAGACGGGCAAGAC CCCTTCCTGCAGTGCACACGCATCATCGAGACGGGCAAGAC < 41bp 0.761589013765474 0.450907989102555 0.24359497 0.11703375 prediction 0.523178027530948 Functional Loss - EDA ENSG00000158813 CDS Human protein_coding chrX:69255285 chrX:69255287 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_61833 0 0 0 0 1 EDA chrX:69255208 3'AG 69255208 Downstream 80bp
chr6 33383646 33383646 1 + C T LUAD 33383644 + 33383624 33383664 41 ATCCCTAAAAGTGCCCCCCACTCGATGACTGCCTCATCTTC ATCCCTAAAAGTGCCCCCCACTTGATGACTGCCTCATCTTC < 41bp 0.786502268418742 0.524913437102066 0.76243824 0.10039261 prediction 0.523177662633353 Functional Loss - PHF1 ENSG00000112511 CDS Human protein_coding chr6:33383644 chr6:33383646 stopgain 0.995 0 23 hm5C_associated_SNPs_61834 0 0 1 0 1 PHF1 chr6:33383587 3'AG 33383587 Downstream 60bp
chr11 92703026 92703026 1 + G C LUAD 92703025 + 92703005 92703045 41 GGTGGCTCCAGCGCTGTCCGCGGTGCTCATCGTCACCACCG GGTGGCTCCAGCGCTGTCCGCCGTGCTCATCGTCACCACCG < 41bp 0.839262119111878 0.577681105451391 0.74129 0.33223534 prediction 0.523162027320974 Functional Loss - MTNR1B ENSG00000134640 CDS Human protein_coding chr11:92703025 chr11:92703026 synonymous SNV . 0 22 hm5C_associated_SNPs_61837 0 0 0 0 1 MTNR1B chr11:92703114 5'GT 92703114 Upstream 89bp
chr1 154295777 154295777 1 + C T SKCM 154295775 + 154295755 154295795 41 ACTGGCCCCAAGGAGACAGCCTCCATTTTTGCCACCTATCC ACTGGCCCCAAGGAGACAGCCTTCATTTTTGCCACCTATCC < 41bp 0.761580802668289 0.476312185825026 0.96605706 0.15685445 prediction 0.523161605336579 Functional Loss - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154295775 chr1:154295777 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_61838 0 0 0 0 2 AQP10 chr1:154295717 3'AG 154295717 Downstream 61bp
chr1 154295777 154295777 1 + C T SKCM 154295775 + 154295755 154295795 41 ACTGGCCCCAAGGAGACAGCCTCCATTTTTGCCACCTATCC ACTGGCCCCAAGGAGACAGCCTTCATTTTTGCCACCTATCC < 41bp 0.761580802668289 0.476312185825026 0.96605706 0.15685445 prediction 0.523161605336579 Functional Loss - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154295775 chr1:154295777 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_61838 0 0 0 0 2 AQP10 chr1:154295835 5'GT 154295835 Upstream 59bp
chr2 106690478 106690478 1 + C T CESC 106690476 + 106690456 106690496 41 AGCAGTGGTACCAGCAGTTTCTCTACATGGGCTTTGACGAA AGCAGTGGTACCAGCAGTTTCTTTACATGGGCTTTGACGAA < 41bp 0.798433722010949 0.536853024648734 0.93587947 0.2675299 prediction 0.52316139472443 Functional Loss - C2orf40 ENSG00000119147 CDS Human protein_coding chr2:106690476 chr2:106690478 synonymous SNV . 0 23 hm5C_associated_SNPs_61839 0 0 0 0 1 C2orf40 chr2:106690499 5'GT 106690499 Upstream 22bp
chr1 1417552 1417552 1 + G T GBM 1417549 + 1417529 1417569 41 CGGGAGATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGT CGGGAGATGGAGCTGCGGCACAATAATGAGATGCTGCGAGT < 41bp 0.911852996728617 0.650277029038278 0.41761285 0.54681075 prediction 0.523151935380676 Functional Loss - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1417549 chr1:1417552 nonsynonymous SNV 0.011 4 24 hm5C_associated_SNPs_61841 0 0 1 0 1 ATAD3B chr1:1417518 3'AG 1417518 Downstream 35bp
chr7 6803581 6803581 1 + C T STAD 6803579 + 6803559 6803599 41 GGCGACTTTGTGAAGAATGTCCCGATGAACCACGGCGTGTA GGCGACTTTGTGAAGAATGTCCTGATGAACCACGGCGTGTA < 41bp 0.787237656965968 0.525676993145641 0.14372635 0.22222319 prediction 0.523121327640654 Functional Loss - RSPH10B;RSPH10B2 ENSG00000169402 CDS Human protein_coding chr7:6803579 chr7:6803581 nonsynonymous SNV 0.757 1 23 hm5C_associated_SNPs_61842 0 0 0 0 1 RSPH10B;RSPH10B2 chr7:6803559 3'AG 6803559 Downstream 23bp
chr9 130569504 130569504 1 + C T BLCA 130569502 + 130569482 130569522 41 CCACAGGATGGCAGCTGTGTCTCCATGCCCCCCTACTTCCG CCACAGGATGGCAGCTGTGTCTTCATGCCCCCCTACTTCCG < 41bp 0.805084876632275 0.543533613029126 0.9801322 0.84126854 prediction 0.523102527206297 Functional Loss - FPGS ENSG00000136877 CDS Human protein_coding chr9:130569502 chr9:130569504 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_61844 0 0 1 0 2 FPGS chr9:130569488 3'AG 130569488 Downstream 17bp
chr9 130569504 130569504 1 + C T BLCA 130569502 + 130569482 130569522 41 CCACAGGATGGCAGCTGTGTCTCCATGCCCCCCTACTTCCG CCACAGGATGGCAGCTGTGTCTTCATGCCCCCCTACTTCCG < 41bp 0.805084876632275 0.543533613029126 0.9801322 0.84126854 prediction 0.523102527206297 Functional Loss - FPGS ENSG00000136877 CDS Human protein_coding chr9:130569502 chr9:130569504 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_61844 0 0 1 0 2 FPGS chr9:130569565 5'GT 130569565 Upstream 62bp
chr19 41743962 41743962 1 + C T GBM 41743960 + 41743940 41743980 41 ATCAGCTTCGGCTAGGCAGCCTCCATCCTCACACCCCTTAT ATCAGCTTCGGCTAGGCAGCCTTCATCCTCACACCCCTTAT < 41bp 0.761542237004739 0.470688747137002 0.94304407 0.07637259 prediction 0.523084474009479 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41743960 chr19:41743962 synonymous SNV . 0 23 hm5C_associated_SNPs_61846 0 0 1 0 1 AXL chr19:41744059 5'GT 41744059 Upstream 98bp
chr20 31814762 31814762 1 + C T rs200838072 31814760 + 31814740 31814780 41 GTCCTCTGATCGGTGAAATCCTCGGGCAGCTGGATGTGAAA GTCCTCTGATCGGTGAAATCCTTGGGCAGCTGGATGTGAAA < 41bp 0.80165211115953 0.54014322706925 0.6919099 0.42123884 prediction 0.523017768180559 Functional Loss - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31814760 chr20:31814762 synonymous SNV . 0 23 hm5C_associated_SNPs_61854 0 0 0 0 2 BPIFA3 chr20:31814736 3'AG 31814736 Downstream 27bp
chr20 31814762 31814762 1 + C T rs200838072 31814760 + 31814740 31814780 41 GTCCTCTGATCGGTGAAATCCTCGGGCAGCTGGATGTGAAA GTCCTCTGATCGGTGAAATCCTTGGGCAGCTGGATGTGAAA < 41bp 0.80165211115953 0.54014322706925 0.6919099 0.42123884 prediction 0.523017768180559 Functional Loss - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31814760 chr20:31814762 synonymous SNV . 0 23 hm5C_associated_SNPs_61854 0 0 0 0 2 BPIFA3 chr20:31814799 5'GT 31814799 Upstream 38bp
chr6 18215342 18215342 1 + G T PAAD 18215340 + 18215320 18215360 41 AGCAGTGCATGGCCACGCTCCGGGAGCTGTTCAAGGAGCAG AGCAGTGCATGGCCACGCTCCGTGAGCTGTTCAAGGAGCAG < 41bp 0.875839004427424 0.614330245737198 0.90152895 0.2603393 prediction 0.523017517380451 Functional Loss - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18215340 chr6:18215342 synonymous SNV . 0 23 hm5C_associated_SNPs_61855 0 0 1 0 1 KDM1B chr6:18215360 5'GT 18215360 Upstream 19bp
chr19 1221228 1221228 1 + G C LUAD 1221224 + 1221204 1221244 41 AAATGAAGCTACAACATCACCACGGGTCTGTACCCCTTCGA AAATGAAGCTACAACATCACCACGCGTCTGTACCCCTTCGA < 41bp 0.761498671490343 0.48281424432688 0.4648389 0.14962801 prediction 0.522997342980686 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1221224 chr19:1221228 nonsynonymous SNV 0.951 5 25 hm5C_associated_SNPs_61858 0 0 1 0 1 STK11 chr19:1221212 3'AG 1221212 Downstream 17bp
chr9 116130573 116130573 1 + G T OV 116130570 + 116130550 116130590 41 CAGAGGGCATTTTGGATCCCCAGGAGTCGGAAATGTTAAAC CAGAGGGCATTTTGGATCCCCAGTAGTCGGAAATGTTAAAC < 41bp 0.761496841373657 0.373917102866575 0.81478095 0.08802208 prediction 0.522993682747314 Functional Loss - BSPRY ENSG00000119411 CDS Human protein_coding chr9:116130570 chr9:116130573 stopgain 0.996 1 24 hm5C_associated_SNPs_61859 0 0 0 0 2 BSPRY chr9:116130539 3'AG 116130539 Downstream 35bp
chr9 116130573 116130573 1 + G T OV 116130570 + 116130550 116130590 41 CAGAGGGCATTTTGGATCCCCAGGAGTCGGAAATGTTAAAC CAGAGGGCATTTTGGATCCCCAGTAGTCGGAAATGTTAAAC < 41bp 0.761496841373657 0.373917102866575 0.81478095 0.08802208 prediction 0.522993682747314 Functional Loss - BSPRY ENSG00000119411 CDS Human protein_coding chr9:116130570 chr9:116130573 stopgain 0.996 1 24 hm5C_associated_SNPs_61859 0 0 0 0 2 BSPRY chr9:116130663 5'GT 116130663 Upstream 91bp
chr16 21982917 21982917 1 + G T UCEC 21982915 + 21982895 21982935 41 GAGGGGTGGGCTTGGTTTATCTGGTGCAAAGGCCAACTACC GAGGGGTGGGCTTGGTTTATCTTGTGCAAAGGCCAACTACC < 41bp 0.87521758980001 0.613726537212964 0.7765741 0.3370728 prediction 0.522982105174093 Functional Loss - UQCRC2 ENSG00000140740 CDS Human protein_coding chr16:21982915 chr16:21982917 nonsynonymous SNV 0.987 4 23 hm5C_associated_SNPs_61861 0 0 1 0 2 UQCRC2 chr16:21982846 3'AG 21982846 Downstream 72bp
chr16 21982917 21982917 1 + G T UCEC 21982915 + 21982895 21982935 41 GAGGGGTGGGCTTGGTTTATCTGGTGCAAAGGCCAACTACC GAGGGGTGGGCTTGGTTTATCTTGTGCAAAGGCCAACTACC < 41bp 0.87521758980001 0.613726537212964 0.7765741 0.3370728 prediction 0.522982105174093 Functional Loss - UQCRC2 ENSG00000140740 CDS Human protein_coding chr16:21982915 chr16:21982917 nonsynonymous SNV 0.987 4 23 hm5C_associated_SNPs_61861 0 0 1 0 2 UQCRC2 chr16:21982941 5'GT 21982941 Upstream 25bp
chr20 18534972 18534972 1 + G T UCEC 18534969 + 18534949 18534989 41 AGGCACCACTGGATGATGCTCAAGAAATTCTGCAAGCACGC AGGCACCACTGGATGATGCTCAATAAATTCTGCAAGCACGC < 41bp 0.761484506720961 0.368939793299701 0.2783004 0.102817744 prediction 0.522969013441922 Functional Loss - SEC23B ENSG00000101310 CDS Human protein_coding chr20:18534969 chr20:18534972 stopgain 1.000 1 24 hm5C_associated_SNPs_61862 0 0 1 0 2 SEC23B chr20:18534879 3'AG 18534879 Downstream 94bp
chr20 18534972 18534972 1 + G T UCEC 18534969 + 18534949 18534989 41 AGGCACCACTGGATGATGCTCAAGAAATTCTGCAAGCACGC AGGCACCACTGGATGATGCTCAATAAATTCTGCAAGCACGC < 41bp 0.761484506720961 0.368939793299701 0.2783004 0.102817744 prediction 0.522969013441922 Functional Loss - SEC23B ENSG00000101310 CDS Human protein_coding chr20:18534969 chr20:18534972 stopgain 1.000 1 24 hm5C_associated_SNPs_61862 0 0 1 0 2 SEC23B chr20:18535034 5'GT 18535034 Upstream 63bp
chr14 97319244 97319244 1 + C T SKCM 97319242 + 97319222 97319262 41 AGCAAATGCCAAAAGGTTTTCTCGGAAAACTGTCTTGCAGC AGCAAATGCCAAAAGGTTTTCTTGGAAAACTGTCTTGCAGC < 41bp 0.76148012136927 0.49173841623473 0.112372786 0.14515728 prediction 0.522960242738541 Functional Loss - VRK1 ENSG00000100749 CDS Human protein_coding chr14:97319242 chr14:97319244 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_61864 0 0 1 0 2 VRK1 chr14:97319168 3'AG 97319168 Downstream 77bp
chr14 97319244 97319244 1 + C T SKCM 97319242 + 97319222 97319262 41 AGCAAATGCCAAAAGGTTTTCTCGGAAAACTGTCTTGCAGC AGCAAATGCCAAAAGGTTTTCTTGGAAAACTGTCTTGCAGC < 41bp 0.76148012136927 0.49173841623473 0.112372786 0.14515728 prediction 0.522960242738541 Functional Loss - VRK1 ENSG00000100749 CDS Human protein_coding chr14:97319242 chr14:97319244 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_61864 0 0 1 0 2 VRK1 chr14:97319276 5'GT 97319276 Upstream 33bp
chr3 42632421 42632421 1 + G C BLCA 42632417 + 42632397 42632437 41 TGGCCTTCGTACCGGACTGGCTGAGGGGCAAGGCGGAAGTC TGGCCTTCGTACCGGACTGGCTGACGGGCAAGGCGGAAGTC < 41bp 0.761477420525706 0.497881802240038 0.35331154 0.37192404 prediction 0.522954841051411 Functional Loss - SS18L2 ENSG00000008324 CDS Human protein_coding chr3:42632417 chr3:42632421 nonsynonymous SNV 0.858 1 25 hm5C_associated_SNPs_61865 0 0 1 0 1 SS18L2 chr3:42632458 5'GT 42632458 Upstream 38bp
chr3 122044184 122044184 1 + A C SKCM 122044180 + 122044160 122044200 41 TGAGGCCAAACCCGCCACTCCAGAAATCCAGGAGATTGTTG TGAGGCCAAACCCGCCACTCCAGACATCCAGGAGATTGTTG < 41bp 0.761469555661248 0.375924784332579 0.20402604 0.14694566 prediction 0.522939111322495 Functional Loss - CSTA ENSG00000121552 CDS Human protein_coding chr3:122044180 chr3:122044184 nonsynonymous SNV 0.990 4 25 hm5C_associated_SNPs_61868 0 0 0 0 1 CSTA chr3:122044205 5'GT 122044205 Upstream 22bp
chr12 52306962 52306962 1 + G T COAD 52306959 + 52306939 52306979 41 CATTGCAAGGGGCCTACCTGCCGGGGGGCCTGGTGCACAGT CATTGCAAGGGGCCTACCTGCCGTGGGGCCTGGTGCACAGT < 41bp 0.761454974440177 0.358082327073104 0.92964643 0.20059028 prediction 0.522909948880354 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52306959 chr12:52306962 synonymous SNV . 0 24 hm5C_associated_SNPs_61870 0 0 0 0 1 ACVRL1 chr12:52306883 3'AG 52306883 Downstream 80bp
chr19 50208359 50208359 1 + G T LUAD 50208357 + 50208337 50208377 41 ACCGCCACCGCCTGAACCGCCAGGAGATACCCCCGGTGAGA ACCGCCACCGCCTGAACCGCCATGAGATACCCCCGGTGAGA < 41bp 0.889079613163612 0.627626790840716 0.9084406 0.49548644 prediction 0.522905644645793 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50208357 chr19:50208359 nonsynonymous SNV 0.839 4 23 hm5C_associated_SNPs_61871 0 0 1 0 3 CPT1C chr19:50208264 3'AG 50208264 Downstream 96bp
chr19 50208359 50208359 1 + G T LUAD 50208357 + 50208337 50208377 41 ACCGCCACCGCCTGAACCGCCAGGAGATACCCCCGGTGAGA ACCGCCACCGCCTGAACCGCCATGAGATACCCCCGGTGAGA < 41bp 0.889079613163612 0.627626790840716 0.9084406 0.49548644 prediction 0.522905644645793 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50208357 chr19:50208359 nonsynonymous SNV 0.839 4 23 hm5C_associated_SNPs_61871 0 0 1 0 3 CPT1C chr19:50208297 3'AG 50208297 Downstream 63bp
chr19 50208359 50208359 1 + G T LUAD 50208357 + 50208337 50208377 41 ACCGCCACCGCCTGAACCGCCAGGAGATACCCCCGGTGAGA ACCGCCACCGCCTGAACCGCCATGAGATACCCCCGGTGAGA < 41bp 0.889079613163612 0.627626790840716 0.9084406 0.49548644 prediction 0.522905644645793 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50208357 chr19:50208359 nonsynonymous SNV 0.839 4 23 hm5C_associated_SNPs_61871 0 0 1 0 3 CPT1C chr19:50208371 5'GT 50208371 Upstream 13bp
chr4 83378094 83378094 1 + G T SARC 83378091 + 83378071 83378111 41 GTTGATGGTCACTTTGATACCAAGATTGGACACAAAGTAGA GTTGATGGTCACTTTGATACCAATATTGGACACAAAGTAGA < 41bp 0.902137765827473 0.640686827200304 0.06286776 0.05021748 prediction 0.522901877254337 Functional Loss - ENOPH1 ENSG00000145293 CDS Human protein_coding chr4:83378091 chr4:83378094 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_61872 0 0 1 0 2 ENOPH1 chr4:83378068 3'AG 83378068 Downstream 27bp
chr4 83378094 83378094 1 + G T SARC 83378091 + 83378071 83378111 41 GTTGATGGTCACTTTGATACCAAGATTGGACACAAAGTAGA GTTGATGGTCACTTTGATACCAATATTGGACACAAAGTAGA < 41bp 0.902137765827473 0.640686827200304 0.06286776 0.05021748 prediction 0.522901877254337 Functional Loss - ENOPH1 ENSG00000145293 CDS Human protein_coding chr4:83378091 chr4:83378094 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_61872 0 0 1 0 2 ENOPH1 chr4:83378191 5'GT 83378191 Upstream 98bp
chr11 74680673 74680673 1 + C T rs372017116 74680671 + 74680651 74680691 41 ATAAGGAGAAGAGCATCTTTCTCGTGGCCCACAGGAAAGAT ATAAGGAGAAGAGCATCTTTCTTGTGGCCCACAGGAAAGAT < 41bp 0.810252830352233 0.548811844600339 0.08750424 0.09240538 prediction 0.522881971503789 Functional Loss - SPCS2 ENSG00000118363 CDS Human protein_coding chr11:74680671 chr11:74680673 synonymous SNV . 0 23 hm5C_associated_SNPs_61873 0 0 0 0 1 SPCS2 chr11:74680744 5'GT 74680744 Upstream 72bp
chr13 115002357 115002357 1 + C T COAD 115002355 + 115002335 115002375 41 AGCCGCCCATGCACTTCGGTCACGAAAACTGGACAAAGTAA AGCCGCCCATGCACTTCGGTCATGAAAACTGGACAAAGTAA < 41bp 0.761440162608989 0.483883342778122 0.06031567 0.103862464 prediction 0.522880325217978 Functional Loss - CDC16 ENSG00000130177 CDS Human protein_coding chr13:115002355 chr13:115002357 stopgain 0.989 1 23 hm5C_associated_SNPs_61874 0 0 1 0 3 CDC16 chr13:115002274 3'AG 115002274 Downstream 84bp
chr13 115002357 115002357 1 + C T COAD 115002355 + 115002335 115002375 41 AGCCGCCCATGCACTTCGGTCACGAAAACTGGACAAAGTAA AGCCGCCCATGCACTTCGGTCATGAAAACTGGACAAAGTAA < 41bp 0.761440162608989 0.483883342778122 0.06031567 0.103862464 prediction 0.522880325217978 Functional Loss - CDC16 ENSG00000130177 CDS Human protein_coding chr13:115002355 chr13:115002357 stopgain 0.989 1 23 hm5C_associated_SNPs_61874 0 0 1 0 3 CDC16 chr13:115002277 3'AG 115002277 Downstream 81bp
chr13 115002357 115002357 1 + C T COAD 115002355 + 115002335 115002375 41 AGCCGCCCATGCACTTCGGTCACGAAAACTGGACAAAGTAA AGCCGCCCATGCACTTCGGTCATGAAAACTGGACAAAGTAA < 41bp 0.761440162608989 0.483883342778122 0.06031567 0.103862464 prediction 0.522880325217978 Functional Loss - CDC16 ENSG00000130177 CDS Human protein_coding chr13:115002355 chr13:115002357 stopgain 0.989 1 23 hm5C_associated_SNPs_61874 0 0 1 0 3 CDC16 chr13:115002371 5'GT 115002371 Upstream 15bp
chr17 42429721 42429721 1 + G C BLCA 42429720 + 42429700 42429740 41 CCCCGCCAGGCTGTGTGCTGCGAGGATCGCCAGCACTGCTG CCCCGCCAGGCTGTGTGCTGCCAGGATCGCCAGCACTGCTG < 41bp 0.761411268000655 0.439291840244001 0.92009056 0.901294 prediction 0.52282253600131 Functional Loss - GRN ENSG00000030582 CDS Human protein_coding chr17:42429720 chr17:42429721 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_61878 0 0 1 0 1 GRN chr17:42429709 3'AG 42429709 Downstream 13bp
chr3 20167474 20167474 1 + C T BLCA 20167472 + 20167452 20167492 41 GCAGGGGTGTAATTGAATTTCACGTGGTTGGCAATTCCCTC GCAGGGGTGTAATTGAATTTCATGTGGTTGGCAATTCCCTC < 41bp 0.784011343749102 0.522615693071311 0.07693139 0.093251646 prediction 0.522791301355583 Functional Loss - KAT2B ENSG00000114166 CDS Human protein_coding chr3:20167472 chr3:20167474 synonymous SNV . 0 23 hm5C_associated_SNPs_61881 0 0 0 0 1 KAT2B chr3:20167397 3'AG 20167397 Downstream 78bp
chr4 74351593 74351593 1 + G T rs187546247 74351591 + 74351571 74351611 41 TTGTATAGAATAATGTTTTACAGGAAAAAATATGTGCTATG TTGTATAGAATAATGTTTTACATGAAAAAATATGTGCTATG < 41bp 0.761381968580345 0.442016457097301 0.24986371 0.11096683 prediction 0.522763937160689 Functional Loss - AFM ENSG00000079557 CDS Human protein_coding chr4:74351591 chr4:74351593 nonsynonymous SNV 0.033 3 23 hm5C_associated_SNPs_61889 0 0 0 0 1 AFM chr4:74351579 3'AG 74351579 Downstream 15bp
chr1 86961245 86961245 1 + C T COAD 86961243 + 86961223 86961263 41 AGGTATTTCACAACTTATGACACGAATGGTAGATACAGTGT AGGTATTTCACAACTTATGACATGAATGGTAGATACAGTGT < 41bp 0.778432671288069 0.517061591711325 0.058745027 0.108641535 prediction 0.522742159153488 Functional Loss - CLCA1 ENSG00000016490 CDS Human protein_coding chr1:86961243 chr1:86961245 nonsynonymous SNV 0.956 0 23 hm5C_associated_SNPs_61893 0 0 0 0 1 CLCA1 chr1:86961188 3'AG 86961188 Downstream 58bp
chr2 190332311 190332311 1 + C T UCEC 190332309 + 190332289 190332329 41 GTTAGTTTTGAGGAAATAGTCACAATATGGGATTCTGTAAC GTTAGTTTTGAGGAAATAGTCATAATATGGGATTCTGTAAC < 41bp 0.809667384584173 0.54829829341366 0.11326775 0.13469976 prediction 0.522738182341027 Functional Loss - WDR75 ENSG00000115368 CDS Human protein_coding chr2:190332309 chr2:190332311 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_61894 0 0 1 0 1 WDR75 chr2:190332374 5'GT 190332374 Upstream 64bp
chr1 11896113 11896113 1 + C T PAAD 11896111 + 11896091 11896131 41 CTGGTGAGCATCCTGCGCACCACGGTCCACCATGCCTTCCC CTGGTGAGCATCCTGCGCACCATGGTCCACCATGCCTTCCC < 41bp 0.761369013747868 0.494574637980869 0.03539124 0.03310117 prediction 0.522738027495735 Functional Loss - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11896111 chr1:11896113 nonsynonymous SNV 0.979 5 23 hm5C_associated_SNPs_61895 0 0 1 0 2 CLCN6 chr1:11896024 3'AG 11896024 Downstream 90bp
chr1 11896113 11896113 1 + C T PAAD 11896111 + 11896091 11896131 41 CTGGTGAGCATCCTGCGCACCACGGTCCACCATGCCTTCCC CTGGTGAGCATCCTGCGCACCATGGTCCACCATGCCTTCCC < 41bp 0.761369013747868 0.494574637980869 0.03539124 0.03310117 prediction 0.522738027495735 Functional Loss - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11896111 chr1:11896113 nonsynonymous SNV 0.979 5 23 hm5C_associated_SNPs_61895 0 0 1 0 2 CLCN6 chr1:11896210 5'GT 11896210 Upstream 98bp
chr1 23695932 23695932 1 - C A HNSC 23695934 - 23695914 23695954 41 ACGCCAGGTCTGAGAGAACGCTGCGGCTCTGGAACCCGTTC ACGCCAGGTCTGAGAGAACGCTTCGGCTCTGGAACCCGTTC < 41bp 0.810926279090241 0.549559876491581 0.79221827 0.25715792 prediction 0.522732805197319 Functional Loss - ZNF436-AS1 ENSG00000249087 CDS Human antisense chr1:23695934 chr1:23695932 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_61897 0 0 1 0 1 ZNF436-AS1 chr1:23695859 5'GT 23695859 Upstream 74bp
chr10 133962951 133962951 1 + C T DLBC 133962949 + 133962929 133962969 41 AGTCACCCGCCATCAGCTTCCACCACACGCCCTTCGTGGAC AGTCACCCGCCATCAGCTTCCATCACACGCCCTTCGTGGAC < 41bp 0.781535182391159 0.520171251070098 0.1267454 0.259991 prediction 0.522727862642122 Functional Loss - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133962949 chr10:133962951 synonymous SNV . 0 23 hm5C_associated_SNPs_61898 0 0 0 0 2 JAKMIP3 chr10:133962916 3'AG 133962916 Downstream 36bp
chr10 133962951 133962951 1 + C T DLBC 133962949 + 133962929 133962969 41 AGTCACCCGCCATCAGCTTCCACCACACGCCCTTCGTGGAC AGTCACCCGCCATCAGCTTCCATCACACGCCCTTCGTGGAC < 41bp 0.781535182391159 0.520171251070098 0.1267454 0.259991 prediction 0.522727862642122 Functional Loss - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133962949 chr10:133962951 synonymous SNV . 0 23 hm5C_associated_SNPs_61898 0 0 0 0 2 JAKMIP3 chr10:133963014 5'GT 133963014 Upstream 64bp
chr1 99771309 99771309 1 + G T LUAD 99771306 + 99771286 99771326 41 TTTCAGCACAGAGACGCCCTCAGGTCTCTGACAGACCTCAA TTTCAGCACAGAGACGCCCTCAGTTCTCTGACAGACCTCAA < 41bp 0.76135867408048 0.378398635984918 0.5056596 0.15461501 prediction 0.522717348160961 Functional Loss - PLPPR4 ENSG00000117600 CDS Human protein_coding chr1:99771306 chr1:99771309 nonsynonymous SNV 0.923 0 24 hm5C_associated_SNPs_61899 0 0 0 0 1 PLPPR4 chr1:99771241 3'AG 99771241 Downstream 69bp
chr8 124812082 124812082 1 + C T UCEC 124812080 + 124812060 124812100 41 GTTCCTACCTCAAATGTGCTCACGATGTTGAATGATGCTTT GTTCCTACCTCAAATGTGCTCATGATGTTGAATGATGCTTT < 41bp 0.761357672010029 0.480934890322129 0.086217284 0.087844044 prediction 0.522715344020058 Functional Loss - FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124812080 chr8:124812082 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_61900 0 0 0 0 1 FAM91A1 chr8:124812125 5'GT 124812125 Upstream 44bp
chr1 231474322 231474322 1 + G C BLCA 231474321 + 231474301 231474341 41 TGGGGCCAGCTGGAGGCCGTCGAGGTGAAGTGGAGCGTGCG TGGGGCCAGCTGGAGGCCGTCCAGGTGAAGTGGAGCGTGCG < 41bp 0.761316853887028 0.455671608823311 0.9074346 0.90147066 prediction 0.522633707774055 Functional Loss - SPRTN ENSG00000010072 CDS Human protein_coding chr1:231474321 chr1:231474322 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_61904 0 0 1 0 1 SPRTN chr1:231474350 5'GT 231474350 Upstream 29bp
chr11 26663532 26663532 1 + A T SKCM 26663528 + 26663508 26663548 41 AGTGGGAAAATGATTGGAATCTGCAGCCCATGAACCTTCAT AGTGGGAAAATGATTGGAATCTGCTGCCCATGAACCTTCAT < 41bp 0.761309281386799 0.438920779304616 0.14727706 0.07708493 prediction 0.522618562773597 Functional Loss - ANO3 ENSG00000134343 CDS Human protein_coding chr11:26663528 chr11:26663532 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_61905 0 0 0 0 2 ANO3 chr11:26663443 3'AG 26663443 Downstream 90bp
chr11 26663532 26663532 1 + A T SKCM 26663528 + 26663508 26663548 41 AGTGGGAAAATGATTGGAATCTGCAGCCCATGAACCTTCAT AGTGGGAAAATGATTGGAATCTGCTGCCCATGAACCTTCAT < 41bp 0.761309281386799 0.438920779304616 0.14727706 0.07708493 prediction 0.522618562773597 Functional Loss - ANO3 ENSG00000134343 CDS Human protein_coding chr11:26663528 chr11:26663532 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_61905 0 0 0 0 2 ANO3 chr11:26663576 5'GT 26663576 Upstream 45bp
chr11 60637083 60637083 1 + C T OV 60637081 + 60637061 60637101 41 CGTGTGGATGTGGCACAAGACGCTACTCTGATCTGTCCCAA CGTGTGGATGTGGCACAAGACGTTACTCTGATCTGTCCCAA < 41bp 0.76130781741736 0.495095555517674 0.092012435 0.10732722 prediction 0.52261563483472 Functional Loss - ZP1 ENSG00000149506 CDS Human protein_coding chr11:60637081 chr11:60637083 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_61908 0 0 0 0 1 ZP1 chr11:60637010 3'AG 60637010 Downstream 74bp
chr3 49751254 49751254 1 + G C CESC 49751250 + 49751230 49751270 41 CGGGCTGTGGAGCGAATCCCCGAGGAGCAGTGAGTGGGGCC CGGGCTGTGGAGCGAATCCCCGAGCAGCAGTGAGTGGGGCC < 41bp 0.761302936318956 0.482756635937519 0.9117017 0.86095697 prediction 0.522605872637912 Functional Loss - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49751250 chr3:49751254 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_61909 0 0 1 0 2 RNF123 chr3:49751171 3'AG 49751171 Downstream 84bp
chr3 49751254 49751254 1 + G C CESC 49751250 + 49751230 49751270 41 CGGGCTGTGGAGCGAATCCCCGAGGAGCAGTGAGTGGGGCC CGGGCTGTGGAGCGAATCCCCGAGCAGCAGTGAGTGGGGCC < 41bp 0.761302936318956 0.482756635937519 0.9117017 0.86095697 prediction 0.522605872637912 Functional Loss - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49751250 chr3:49751254 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_61909 0 0 1 0 2 RNF123 chr3:49751258 5'GT 49751258 Upstream 5bp
chr2 9570054 9570054 1 + C T COAD 9570052 + 9570032 9570072 41 TCTTTTCCTGTTTCTTTCAGCTCGACTGTGGGATCCACCCT TCTTTTCCTGTTTCTTTCAGCTTGACTGTGGGATCCACCCT < 41bp 0.788889128563228 0.527586379855731 0.12567845 0.1290623 prediction 0.522605497414993 Functional Loss - CPSF3 ENSG00000119203 CDS Human protein_coding chr2:9570052 chr2:9570054 synonymous SNV . 0 23 hm5C_associated_SNPs_61910 0 0 0 0 2 CPSF3 chr2:9570052 3'AG 9570052 Downstream 3bp
chr2 9570054 9570054 1 + C T COAD 9570052 + 9570032 9570072 41 TCTTTTCCTGTTTCTTTCAGCTCGACTGTGGGATCCACCCT TCTTTTCCTGTTTCTTTCAGCTTGACTGTGGGATCCACCCT < 41bp 0.788889128563228 0.527586379855731 0.12567845 0.1290623 prediction 0.522605497414993 Functional Loss - CPSF3 ENSG00000119203 CDS Human protein_coding chr2:9570052 chr2:9570054 synonymous SNV . 0 23 hm5C_associated_SNPs_61910 0 0 0 0 2 CPSF3 chr2:9570149 5'GT 9570149 Upstream 96bp
chr7 127544871 127544871 1 + G T LUSC 127544868 + 127544848 127544888 41 CCACCGTGTTGCAGATATATCTGGGGTGAGTCGAGTCCCTG CCACCGTGTTGCAGATATATCTGTGGTGAGTCGAGTCCCTG < 41bp 0.761301208710389 0.498848718974364 0.9345193 0.6030391 prediction 0.522602417420778 Functional Loss - SND1 ENSG00000197157 CDS Human protein_coding chr7:127544868 chr7:127544871 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_61911 0 0 1 0 2 SND1 chr7:127544800 3'AG 127544800 Downstream 72bp
chr7 127544871 127544871 1 + G T LUSC 127544868 + 127544848 127544888 41 CCACCGTGTTGCAGATATATCTGGGGTGAGTCGAGTCCCTG CCACCGTGTTGCAGATATATCTGTGGTGAGTCGAGTCCCTG < 41bp 0.761301208710389 0.498848718974364 0.9345193 0.6030391 prediction 0.522602417420778 Functional Loss - SND1 ENSG00000197157 CDS Human protein_coding chr7:127544868 chr7:127544871 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_61911 0 0 1 0 2 SND1 chr7:127544872 5'GT 127544872 Upstream 2bp
chr15 57545466 57545466 1 + C T COAD 57545464 + 57545444 57545484 41 TTTTTAATCCATACAGCAGTCTCGAATGGAGGATCGTTTAG TTTTTAATCCATACAGCAGTCTTGAATGGAGGATCGTTTAG < 41bp 0.761297954975266 0.485083018480183 0.90908706 0.14246747 prediction 0.522595909950532 Functional Loss - TCF12 ENSG00000140262 CDS Human protein_coding chr15:57545464 chr15:57545466 stopgain 1.000 1 23 hm5C_associated_SNPs_61912 0 0 1 0 1 TCF12 chr15:57545460 3'AG 57545460 Downstream 7bp
chrX 55117825 55117825 1 + G T UCEC 55117822 + 55117802 55117842 41 GCTTAAGATAGAGGATGAGCCTGGAGATGGTCCTGATGTCA GCTTAAGATAGAGGATGAGCCTGTAGATGGTCCTGATGTCA < 41bp 0.900802647556183 0.63951368197235 0.30684006 0.12065536 prediction 0.522577931167667 Functional Loss - PAGE2 ENSG00000234068 CDS Human protein_coding chrX:55117822 chrX:55117825 nonsynonymous SNV 0.003 3 24 hm5C_associated_SNPs_61913 0 0 0 0 2 PAGE2 chrX:55117765 3'AG 55117765 Downstream 61bp
chrX 55117825 55117825 1 + G T UCEC 55117822 + 55117802 55117842 41 GCTTAAGATAGAGGATGAGCCTGGAGATGGTCCTGATGTCA GCTTAAGATAGAGGATGAGCCTGTAGATGGTCCTGATGTCA < 41bp 0.900802647556183 0.63951368197235 0.30684006 0.12065536 prediction 0.522577931167667 Functional Loss - PAGE2 ENSG00000234068 CDS Human protein_coding chrX:55117822 chrX:55117825 nonsynonymous SNV 0.003 3 24 hm5C_associated_SNPs_61913 0 0 0 0 2 PAGE2 chrX:55117890 5'GT 55117890 Upstream 66bp
chr12 52312898 52312898 1 + C T PRAD 52312896 + 52312876 52312916 41 CCTAACCGGCTGGCTGCAGACCCGGTGAGGCCTCTGCTGGG CCTAACCGGCTGGCTGCAGACCTGGTGAGGCCTCTGCTGGG < 41bp 0.763798239272842 0.50251709606441 0.90630364 0.6604943 prediction 0.522562286416863 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52312896 chr12:52312898 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_61916 0 0 0 0 1 ACVRL1 chr12:52312899 5'GT 52312899 Upstream 2bp
chr2 169940013 169940013 1 + C T SKCM 169940011 + 169939991 169940031 41 CAAGGGAGAGTTATTAATGTCTCCAGTGTTGGAGGTCGCCT CAAGGGAGAGTTATTAATGTCTTCAGTGTTGGAGGTCGCCT < 41bp 0.833010204633875 0.571729290697108 0.93874884 0.04004854 prediction 0.522561827873534 Functional Loss - DHRS9 ENSG00000073737 CDS Human protein_coding chr2:169940011 chr2:169940013 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_61917 0 0 0 0 1 DHRS9 chr2:169940097 5'GT 169940097 Upstream 85bp
chr4 107237689 107237689 1 + G C rs115186370 107237688 + 107237668 107237708 41 TTTCTCACTGCTATAGTACGCGGGTGGCTGGACCTACATGC TTTCTCACTGCTATAGTACGCCGGTGGCTGGACCTACATGC < 41bp 0.830119509993631 0.568852503471389 0.91980875 0.8114603 prediction 0.522534013044486 Functional Loss - AIMP1 ENSG00000164022 UTR5 Human protein_coding chr4:107237688 chr4:107237689 . . 0 22 hm5C_associated_SNPs_61919 0 0 0 0 1 AIMP1 chr4:107237751 5'GT 107237751 Upstream 63bp
chr1 229779310 229779310 1 + A T LUAD 229779306 + 229779286 229779326 41 AAATTCCTGTTCAGGTCACTCAGGATATTGAGCCTCATTTG AAATTCCTGTTCAGGTCACTCAGGTTATTGAGCCTCATTTG < 41bp 0.834663916913658 0.573406180831676 0.90848285 0.9032465 prediction 0.522515472163964 Functional Loss - URB2 ENSG00000135763 CDS Human protein_coding chr1:229779306 chr1:229779310 nonsynonymous SNV 0.797 1 25 hm5C_associated_SNPs_61922 0 0 1 0 1 URB2 chr1:229779280 3'AG 229779280 Downstream 31bp
chr17 75209484 75209484 1 + G T LUSC 75209481 + 75209461 75209501 41 GTGCGCCGCCAGCAGCCTTCCCCGGGTGGACGACGTGCTTG GTGCGCCGCCAGCAGCCTTCCCCTGGTGGACGACGTGCTTG < 41bp 0.761250396520319 0.381049204757333 0.07615563 0.06586355 prediction 0.522500793040638 Functional Loss - SEC14L1 ENSG00000129657 CDS Human protein_coding chr17:75209481 chr17:75209484 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_61923 0 0 0 0 1 SEC14L1 chr17:75209574 5'GT 75209574 Upstream 91bp
chr7 66260570 66260570 1 + C T UCEC 66260568 + 66260548 66260588 41 TGTGGCCGAAAGGATGCAAACTCGTGGGAAAGGTAACACTG TGTGGCCGAAAGGATGCAAACTTGTGGGAAAGGTAACACTG < 41bp 0.761247938249937 0.478604448351767 0.106960356 0.1424497 prediction 0.522495876499873 Functional Loss - RABGEF1 ENSG00000154710;ENSG00000243335 CDS Human other chr7:66260568 chr7:66260570 nonsynonymous SNV 0.980 2 23 hm5C_associated_SNPs_61925 0 0 1 0 2 RABGEF1 chr7:66260498 3'AG 66260498 Downstream 73bp
chr7 66260570 66260570 1 + C T UCEC 66260568 + 66260548 66260588 41 TGTGGCCGAAAGGATGCAAACTCGTGGGAAAGGTAACACTG TGTGGCCGAAAGGATGCAAACTTGTGGGAAAGGTAACACTG < 41bp 0.761247938249937 0.478604448351767 0.106960356 0.1424497 prediction 0.522495876499873 Functional Loss - RABGEF1 ENSG00000154710;ENSG00000243335 CDS Human other chr7:66260568 chr7:66260570 nonsynonymous SNV 0.980 2 23 hm5C_associated_SNPs_61925 0 0 1 0 2 RABGEF1 chr7:66260579 5'GT 66260579 Upstream 10bp
chr20 43936878 43936878 1 + G T GBM 43936876 + 43936856 43936896 41 AGCCGACAGGCGGAGCCTCCCGGGCACTTGGACCAGGTAAC AGCCGACAGGCGGAGCCTCCCGTGCACTTGGACCAGGTAAC < 41bp 0.761240266409499 0.406740388564426 0.8765836 0.08477017 prediction 0.522480532818999 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43936876 chr20:43936878 nonsynonymous SNV 0.083 2 23 hm5C_associated_SNPs_61926 0 0 0 0 2 RBPJL chr20:43936783 3'AG 43936783 Downstream 96bp
chr20 43936878 43936878 1 + G T GBM 43936876 + 43936856 43936896 41 AGCCGACAGGCGGAGCCTCCCGGGCACTTGGACCAGGTAAC AGCCGACAGGCGGAGCCTCCCGTGCACTTGGACCAGGTAAC < 41bp 0.761240266409499 0.406740388564426 0.8765836 0.08477017 prediction 0.522480532818999 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43936876 chr20:43936878 nonsynonymous SNV 0.083 2 23 hm5C_associated_SNPs_61926 0 0 0 0 2 RBPJL chr20:43936891 5'GT 43936891 Upstream 14bp
chr2 219299296 219299296 1 + G T GBM 219299294 + 219299274 219299314 41 TGGAGACCGGGCCCTCCACACGGCTGTTCCAGGTCCAGGGA TGGAGACCGGGCCCTCCACACGTCTGTTCCAGGTCCAGGGA < 41bp 0.761224338946909 0.409422076657033 0.81608117 0.057686448 prediction 0.522448677893818 Functional Loss - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219299294 chr2:219299296 synonymous SNV . 0 23 hm5C_associated_SNPs_61929 0 0 0 0 1 VIL1 chr2:219299249 3'AG 219299249 Downstream 48bp
chr2 47044405 47044405 1 + G T UCEC 47044402 + 47044382 47044422 41 TCCAGCTTTGAGAGGCAAATCCAGAAATCAGCCCTCCAGCT TCCAGCTTTGAGAGGCAAATCCATAAATCAGCCCTCCAGCT < 41bp 0.761218217640924 0.373284790781497 0.44136113 0.18769264 prediction 0.522436435281849 Functional Loss - LINC01118 ENSG00000222005 CDS Human lincRNA chr2:47044402 chr2:47044405 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_61931 0 0 0 0 1 LINC01118 chr2:47044387 3'AG 47044387 Downstream 19bp
chr2 113955427 113955427 1 + C T SKCM 113955425 + 113955405 113955445 41 GCCACCCCCGCCACGCATTACACCAAGAAGCCGCACGTCTT GCCACCCCCGCCACGCATTACATCAAGAAGCCGCACGTCTT < 41bp 0.761206834608493 0.484478195018966 0.76463985 0.12028739 prediction 0.522413669216985 Functional Loss - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113955425 chr2:113955427 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_61932 0 0 0 0 1 PSD4 chr2:113955490 5'GT 113955490 Upstream 64bp
chr11 21594927 21594927 1 + G T LUAD 21594924 + 21594904 21594944 41 TGGCTCAGTGTGGACGATGGCTGGATCTCCCTGCACAACCT TGGCTCAGTGTGGACGATGGCTGTATCTCCCTGCACAACCT < 41bp 0.79187619552526 0.530673855314466 0.5079349 0.13937002 prediction 0.52240468042159 Functional Loss - NELL1 ENSG00000165973 CDS Human protein_coding chr11:21594924 chr11:21594927 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_61935 0 0 0 0 1 NELL1 chr11:21594955 5'GT 21594955 Upstream 29bp
chr19 10745526 10745526 1 + G T LUSC 10745524 + 10745504 10745544 41 TCGGCTTTCAGACGGATTTCCGGGTGTACCTGCACTTACGG TCGGCTTTCAGACGGATTTCCGTGTGTACCTGCACTTACGG < 41bp 0.761200831439613 0.400218687707402 0.94083524 0.89408857 prediction 0.522401662879227 Functional Loss - SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10745524 chr19:10745526 synonymous SNV . 0 23 hm5C_associated_SNPs_61936 0 0 0 0 1 SLC44A2 chr19:10745563 5'GT 10745563 Upstream 38bp
chr2 239237413 239237413 1 + G T UCEC 239237411 + 239237391 239237431 41 CCTCACTGACCTCAAGATCTCAGGAATTGGATAATAAGAAT CCTCACTGACCTCAAGATCTCATGAATTGGATAATAAGAAT < 41bp 0.869570291195376 0.608382589775498 0.8977485 0.3050204 prediction 0.522375402839756 Functional Loss - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239237411 chr2:239237413 nonsynonymous SNV 0.012 0 23 hm5C_associated_SNPs_61939 0 0 1 0 2 TRAF3IP1 chr2:239237327 3'AG 239237327 Downstream 87bp
chr2 239237413 239237413 1 + G T UCEC 239237411 + 239237391 239237431 41 CCTCACTGACCTCAAGATCTCAGGAATTGGATAATAAGAAT CCTCACTGACCTCAAGATCTCATGAATTGGATAATAAGAAT < 41bp 0.869570291195376 0.608382589775498 0.8977485 0.3050204 prediction 0.522375402839756 Functional Loss - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239237411 chr2:239237413 nonsynonymous SNV 0.012 0 23 hm5C_associated_SNPs_61939 0 0 1 0 2 TRAF3IP1 chr2:239237470 5'GT 239237470 Upstream 58bp
chr17 37864584 37864584 1 + A C rs61737968 37864580 + 37864560 37864600 41 CTTCCCCCTCCCAGGATATCCAGGAGGTGCAGGGCTACGTG CTTCCCCCTCCCAGGATATCCAGGCGGTGCAGGGCTACGTG < 41bp 0.79241578125374 0.531234233299666 0.9282954 0.9339242 prediction 0.522363095908149 Functional Loss - ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37864580 chr17:37864584 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_61940 1 0 1 0 1 ERBB2 chr17:37864574 3'AG 37864574 Downstream 11bp
chr9 35660428 35660428 1 + G C LUAD 35660424 + 35660404 35660444 41 GATGAAACTGCGGTTCTCCACGAGGAGGCAAGCAAGCAGCA GATGAAACTGCGGTTCTCCACGAGCAGGCAAGCAAGCAGCA < 41bp 0.818860721587209 0.557686896236143 0.8524369 0.34385443 prediction 0.522347650702131 Functional Loss - CCDC107 ENSG00000159884 CDS Human protein_coding chr9:35660424 chr9:35660428 nonsynonymous SNV 0.907 2 25 hm5C_associated_SNPs_61944 0 0 0 0 2 CCDC107 chr9:35660398 3'AG 35660398 Downstream 31bp
chr9 35660428 35660428 1 + G C LUAD 35660424 + 35660404 35660444 41 GATGAAACTGCGGTTCTCCACGAGGAGGCAAGCAAGCAGCA GATGAAACTGCGGTTCTCCACGAGCAGGCAAGCAAGCAGCA < 41bp 0.818860721587209 0.557686896236143 0.8524369 0.34385443 prediction 0.522347650702131 Functional Loss - CCDC107 ENSG00000159884 CDS Human protein_coding chr9:35660424 chr9:35660428 nonsynonymous SNV 0.907 2 25 hm5C_associated_SNPs_61944 0 0 0 0 2 CCDC107 chr9:35660458 5'GT 35660458 Upstream 31bp
chr10 45488754 45488754 1 + G T UCEC 45488751 + 45488731 45488771 41 GTCTGACGATGCTGCAGCGCCTGGAGCAGCTGGTGGAGGCC GTCTGACGATGCTGCAGCGCCTGTAGCAGCTGGTGGAGGCC < 41bp 0.905889353738577 0.644715765543012 0.25843865 0.048728853 prediction 0.52234717639113 Functional Loss - RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45488751 chr10:45488754 stopgain 0.995 0 24 hm5C_associated_SNPs_61945 0 0 1 0 1 RASSF4 chr10:45488717 3'AG 45488717 Downstream 38bp
chr5 118970427 118970427 1 + G T LUSC 118970424 + 118970404 118970444 41 GTGTTTCATTCTCCAAAGGACAGGAAGTGAGCAAAGCCTGG GTGTTTCATTCTCCAAAGGACAGTAAGTGAGCAAAGCCTGG < 41bp 0.76117334248895 0.381647734628428 0.110197425 0.025054604 prediction 0.5223466849779 Functional Loss - FAM170A ENSG00000164334 CDS Human protein_coding chr5:118970424 chr5:118970427 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_61946 0 0 0 0 1 FAM170A chr5:118970429 5'GT 118970429 Upstream 3bp
chr17 73221237 73221237 1 + C T UCEC 73221235 + 73221215 73221255 41 GCAGGGCCGGCTGGATGAGGCCCGACAGATGCTCTCCAAGG GCAGGGCCGGCTGGATGAGGCCTGACAGATGCTCTCCAAGG < 41bp 0.777671573279361 0.516516896595853 0.16516188 0.08771914 prediction 0.522309353367016 Functional Loss - NUP85 ENSG00000125450 CDS Human protein_coding chr17:73221235 chr17:73221237 stopgain 0.997 1 23 hm5C_associated_SNPs_61948 0 0 1 0 1 NUP85 chr17:73221198 3'AG 73221198 Downstream 40bp
chr9 130866023 130866023 1 + G T LUSC 130866021 + 130866001 130866041 41 CACAGTGGAGGAGAGGCAGACGGGGATGTGGTGGAGACACC CACAGTGGAGGAGAGGCAGACGTGGATGTGGTGGAGACACC < 41bp 0.76115235849522 0.425075436084959 0.900628 0.7166792 prediction 0.52230471699044 Functional Loss - SLC25A25 ENSG00000148339 CDS Human protein_coding chr9:130866021 chr9:130866023 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_61949 0 0 1 0 2 SLC25A25 chr9:130865960 3'AG 130865960 Downstream 64bp
chr9 130866023 130866023 1 + G T LUSC 130866021 + 130866001 130866041 41 CACAGTGGAGGAGAGGCAGACGGGGATGTGGTGGAGACACC CACAGTGGAGGAGAGGCAGACGTGGATGTGGTGGAGACACC < 41bp 0.76115235849522 0.425075436084959 0.900628 0.7166792 prediction 0.52230471699044 Functional Loss - SLC25A25 ENSG00000148339 CDS Human protein_coding chr9:130866021 chr9:130866023 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_61949 0 0 1 0 2 SLC25A25 chr9:130866118 5'GT 130866118 Upstream 96bp
chr2 155566184 155566184 1 + G T LUSC 155566182 + 155566162 155566202 41 ACTGGATGTAGGTTTTAGTACAGGGGCAGATCAACTTTTTC ACTGGATGTAGGTTTTAGTACATGGGCAGATCAACTTTTTC < 41bp 0.761151620486204 0.418446901484499 0.6682967 0.19833818 prediction 0.522303240972408 Functional Loss - KCNJ3 ENSG00000162989 CDS Human protein_coding chr2:155566182 chr2:155566184 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_61950 0 0 0 0 1 KCNJ3 chr2:155566115 3'AG 155566115 Downstream 70bp
chr8 75263639 75263639 1 + G C LUAD 75263635 + 75263615 75263655 41 GAGAAGTGCCTGTCCTTATCCACGGGGAAAACATAATTTGT GAGAAGTGCCTGTCCTTATCCACGCGGAAAACATAATTTGT < 41bp 0.776780446041231 0.515630337722267 0.68092155 0.43987864 prediction 0.522300216637928 Functional Loss - GDAP1 ENSG00000104381 CDS Human protein_coding chr8:75263635 chr8:75263639 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_61952 2 0 0 0 1 GDAP1 chr8:75263701 5'GT 75263701 Upstream 63bp
chr17 64880696 64880696 1 + G T LUAD 64880694 + 64880674 64880714 41 ATCAACGATGAGATGCTCAACAGGACCAAGGATGCAGAGAC ATCAACGATGAGATGCTCAACATGACCAAGGATGCAGAGAC < 41bp 0.877961389275537 0.616823919045235 0.21499562 0.016436815 prediction 0.522274940460604 Functional Loss - CACNG5 ENSG00000075429 CDS Human protein_coding chr17:64880694 chr17:64880696 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_61953 0 0 0 0 1 CACNG5 chr17:64880778 5'GT 64880778 Upstream 83bp
chr5 145641315 145641315 1 + G T LUSC 145641313 + 145641293 145641333 41 TGCCACAGCATCTACATCAGCAGCAGGTGCTAGTGGCCCAG TGCCACAGCATCTACATCAGCATCAGGTGCTAGTGGCCCAG < 41bp 0.875780750564762 0.614644170080466 0.28063926 0.087697774 prediction 0.52227316096859 Functional Loss - RBM27 ENSG00000091009 CDS Human protein_coding chr5:145641313 chr5:145641315 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_61954 0 0 1 0 1 RBM27 chr5:145641369 5'GT 145641369 Upstream 55bp
chr12 9009912 9009912 1 + C T LUAD 9009910 + 9009890 9009930 41 GCTGACGGAGGAGATCAGGTCTCGGGCAGTGGGTTTCCTGG GCTGACGGAGGAGATCAGGTCTTGGGCAGTGGGTTTCCTGG < 41bp 0.77649753525981 0.515365822493171 0.48002797 0.431296 prediction 0.522263425533277 Functional Loss - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9009910 chr12:9009912 nonsynonymous SNV 0.544 2 23 hm5C_associated_SNPs_61955 1 0 0 0 1 A2ML1 chr12:9009936 5'GT 9009936 Upstream 25bp
chr5 74647091 74647091 1 + G T UCEC 74647089 + 74647069 74647109 41 CTATGCTGGTCAGAAATAACCAGAAATGTGATTCAGTAGAG CTATGCTGGTCAGAAATAACCATAAATGTGATTCAGTAGAG < 41bp 0.761129030606882 0.450061012590424 0.56632507 0.12494674 prediction 0.522258061213764 Functional Loss - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74647089 chr5:74647091 nonsynonymous SNV 0.572 0 23 hm5C_associated_SNPs_61956 0 0 1 0 1 HMGCR chr5:74647140 5'GT 74647140 Upstream 50bp
chr11 7060995 7060995 1 + G T UCEC 7060992 + 7060972 7061012 41 ATGCCAAGGCTGGAGAGACACAAGAAGATCAGGAGGCAGTG ATGCCAAGGCTGGAGAGACACAATAAGATCAGGAGGCAGTG < 41bp 0.906238680536553 0.645110267647848 0.8606307 0.2471194 prediction 0.52225682577741 Functional Loss - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7060992 chr11:7060995 stopgain 0.000 0 24 hm5C_associated_SNPs_61958 0 0 0 0 1 NLRP14 chr11:7061016 5'GT 7061016 Upstream 22bp
chr11 541582 541582 1 + G T SKCM 541579 + 541559 541599 41 ACCTTCGGCTGGTGAGGACGCTGGAGATGTGTGTGGACACT ACCTTCGGCTGGTGAGGACGCTGTAGATGTGTGTGGACACT < 41bp 0.909336237227683 0.648218276849242 0.7511511 0.24219951 prediction 0.522235920756883 Functional Loss - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:541579 chr11:541582 stopgain 0.832 1 24 hm5C_associated_SNPs_61962 0 0 0 0 2 LRRC56 chr11:541537 3'AG 541537 Downstream 46bp
chr11 541582 541582 1 + G T SKCM 541579 + 541559 541599 41 ACCTTCGGCTGGTGAGGACGCTGGAGATGTGTGTGGACACT ACCTTCGGCTGGTGAGGACGCTGTAGATGTGTGTGGACACT < 41bp 0.909336237227683 0.648218276849242 0.7511511 0.24219951 prediction 0.522235920756883 Functional Loss - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:541579 chr11:541582 stopgain 0.832 1 24 hm5C_associated_SNPs_61962 0 0 0 0 2 LRRC56 chr11:541624 5'GT 541624 Upstream 43bp
chr12 132636742 132636742 1 + G T BRCA 132636739 + 132636719 132636759 41 CTGCTGGAGCTCACGGCCTACGAGGTGCGGAACTGGGCCAG CTGCTGGAGCTCACGGCCTACGATGTGCGGAACTGGGCCAG < 41bp 0.902475082754415 0.641357797233839 0.8990505 0.73545355 prediction 0.522234571041151 Functional Loss - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132636739 chr12:132636742 nonsynonymous SNV 0.038 2 24 hm5C_associated_SNPs_61964 0 0 0 0 1 NOC4L chr12:132636742 5'GT 132636742 Upstream 1bp
chr2 241500167 241500167 1 - C G LUAD 241500168 - 241500148 241500188 41 CCCGAGGAAGAGTGAGGGCGCGACGCGCACCAACGGTGGAG CCCGAGGAAGAGTGAGGGCGCCACGCGCACCAACGGTGGAG < 41bp 0.761117006272411 0.472628833728044 0.6639525 0.7405156 prediction 0.522234012544822 Functional Loss - ANKMY1;DUSP28 ENSG00000144504;ENSG00000188542 CDS Human other chr2:241500168 chr2:241500167 synonymous SNV . 0 22 hm5C_associated_SNPs_61965 0 0 1 0 1 ANKMY1;DUSP28 chr2:241500148 5'GT 241500148 Upstream 20bp
chr11 8060537 8060537 1 + G T LUAD 8060534 + 8060514 8060554 41 TCTCAGCATTCAAAGCAGCACAGGAAACCTGGGCCCCTGAA TCTCAGCATTCAAAGCAGCACAGTAAACCTGGGCCCCTGAA < 41bp 0.761114282046752 0.377696618048591 0.87537384 0.93097603 prediction 0.522228564093505 Functional Loss - TUB ENSG00000166402 CDS Human protein_coding chr11:8060534 chr11:8060537 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_61966 0 0 1 0 1 TUB chr11:8060575 5'GT 8060575 Upstream 39bp
chr2 220045846 220045846 1 + C T UCEC 220045844 + 220045824 220045864 41 GCTGATCCAGAGGATGTACACTCGCCTGGAGCCCCTGCTCA GCTGATCCAGAGGATGTACACTTGCCTGGAGCCCCTGCTCA < 41bp 0.79062744929598 0.529520584180234 0.16287646 0.16533083 prediction 0.522213730231491 Functional Loss - RETREG2 ENSG00000144567 CDS Human protein_coding chr2:220045844 chr2:220045846 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_61969 0 0 1 0 1 RETREG2 chr2:220045927 5'GT 220045927 Upstream 82bp
chr1 155582849 155582849 1 + G T LGG 155582847 + 155582827 155582867 41 TCCATCTCTTTAGGTGGTGACAGCAGGAGCAATCATCCCTT TCCATCTCTTTAGGTGGTGACATCAGGAGCAATCATCCCTT < 41bp 0.761101810693984 0.42930164081702 0.41500315 0.3307454 prediction 0.522203621387968 Functional Loss - MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582847 chr1:155582849 nonsynonymous SNV 0.736 3 23 hm5C_associated_SNPs_61971 0 0 1 0 1 MSTO1 chr1:155582840 3'AG 155582840 Downstream 10bp
chr3 10960043 10960043 1 + G T SARC 10960041 + 10960021 10960061 41 ATCATGCTCTGTTGCCTGAACAGCGGCACCAGCTTCGTGGC ATCATGCTCTGTTGCCTGAACATCGGCACCAGCTTCGTGGC < 41bp 0.76108867212189 0.409024691816373 0.5846733 0.17208189 prediction 0.522177344243779 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10960041 chr3:10960043 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_61973 0 0 1 0 2 SLC6A11 chr3:10960014 3'AG 10960014 Downstream 30bp
chr3 10960043 10960043 1 + G T SARC 10960041 + 10960021 10960061 41 ATCATGCTCTGTTGCCTGAACAGCGGCACCAGCTTCGTGGC ATCATGCTCTGTTGCCTGAACATCGGCACCAGCTTCGTGGC < 41bp 0.76108867212189 0.409024691816373 0.5846733 0.17208189 prediction 0.522177344243779 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10960041 chr3:10960043 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_61973 0 0 1 0 2 SLC6A11 chr3:10960138 5'GT 10960138 Upstream 96bp
chr19 47880460 47880460 1 + C T SKCM 47880458 + 47880438 47880478 41 ACTGCGTCCGCATCCCTGCCCTCCAGGTGGGCCTCTGCCCC ACTGCGTCCGCATCCCTGCCCTTCAGGTGGGCCTCTGCCCC < 41bp 0.804883661100613 0.543802916066902 0.9274205 0.35510653 prediction 0.522161490067423 Functional Loss - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47880458 chr19:47880460 synonymous SNV . 0 23 hm5C_associated_SNPs_61975 0 0 1 0 1 DHX34 chr19:47880463 5'GT 47880463 Upstream 4bp
chr1 155582325 155582325 1 + C T READ 155582323 + 155582303 155582343 41 GTGGGAGCCTGGGCCTGCGACCCGAGCCACCTGTCAGCTTC GTGGGAGCCTGGGCCTGCGACCTGAGCCACCTGTCAGCTTC < 41bp 0.783302354919099 0.522228116979877 0.4810602 0.33445996 prediction 0.522148475878444 Functional Loss - MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582323 chr1:155582325 synonymous SNV . 0 23 hm5C_associated_SNPs_61976 0 0 1 0 1 MSTO1 chr1:155582361 5'GT 155582361 Upstream 37bp
chr9 128094292 128094292 1 + G T LUAD 128094290 + 128094270 128094310 41 ACATCTGATGATACGGATGTCAGGGAGGTCAGTTCCCGCCC ACATCTGATGATACGGATGTCATGGAGGTCAGTTCCCGCCC < 41bp 0.872002882890065 0.610942544278132 0.9020808 0.8553089 prediction 0.522120677223866 Functional Loss - GAPVD1 ENSG00000165219 CDS Human protein_coding chr9:128094290 chr9:128094292 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_61979 0 0 1 0 2 GAPVD1 chr9:128094205 3'AG 128094205 Downstream 88bp
chr9 128094292 128094292 1 + G T LUAD 128094290 + 128094270 128094310 41 ACATCTGATGATACGGATGTCAGGGAGGTCAGTTCCCGCCC ACATCTGATGATACGGATGTCATGGAGGTCAGTTCCCGCCC < 41bp 0.872002882890065 0.610942544278132 0.9020808 0.8553089 prediction 0.522120677223866 Functional Loss - GAPVD1 ENSG00000165219 CDS Human protein_coding chr9:128094290 chr9:128094292 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_61979 0 0 1 0 2 GAPVD1 chr9:128094339 5'GT 128094339 Upstream 48bp
chr10 43607557 43607557 1 + G T UCEC 43607554 + 43607534 43607574 41 CTGCCACCTGCAGATGTGGCCGAGGAGGCGGGCTGCCCCCT CTGCCACCTGCAGATGTGGCCGATGAGGCGGGCTGCCCCCT < 41bp 0.761055763378648 0.357630605341913 0.91297424 0.7753087 prediction 0.522111526757297 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43607554 chr10:43607557 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_61982 0 0 0 0 1 RET chr10:43607547 3'AG 43607547 Downstream 11bp
chr6 348820 348820 1 + G T UCEC 348818 + 348798 348838 41 AGAGAGCCCTTTGCAGGATGCAGAAGAAGCCAAAAACATTC AGAGAGCCCTTTGCAGGATGCATAAGAAGCCAAAAACATTC < 41bp 0.761049664759218 0.430632652945185 0.4354079 0.1258145 prediction 0.522099329518436 Functional Loss - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348818 chr6:348820 stopgain 0.998 1 23 hm5C_associated_SNPs_61983 0 0 1 0 2 DUSP22 chr6:348769 3'AG 348769 Downstream 52bp
chr6 348820 348820 1 + G T UCEC 348818 + 348798 348838 41 AGAGAGCCCTTTGCAGGATGCAGAAGAAGCCAAAAACATTC AGAGAGCCCTTTGCAGGATGCATAAGAAGCCAAAAACATTC < 41bp 0.761049664759218 0.430632652945185 0.4354079 0.1258145 prediction 0.522099329518436 Functional Loss - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348818 chr6:348820 stopgain 0.998 1 23 hm5C_associated_SNPs_61983 0 0 1 0 2 DUSP22 chr6:348841 5'GT 348841 Upstream 22bp
chr12 56528198 56528198 1 + G T CESC 56528195 + 56528175 56528215 41 TCCTACAAGACCCTCAAAGCCAGGAGCTCGATGTGCAAGTG TCCTACAAGACCCTCAAAGCCAGTAGCTCGATGTGCAAGTG < 41bp 0.912980206880482 0.651932493984013 0.8289281 0.19392723 prediction 0.522095425792938 Functional Loss - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56528195 chr12:56528198 stopgain 0.975 1 24 hm5C_associated_SNPs_61984 0 0 1 0 2 ESYT1 chr12:56528126 3'AG 56528126 Downstream 73bp
chr12 56528198 56528198 1 + G T CESC 56528195 + 56528175 56528215 41 TCCTACAAGACCCTCAAAGCCAGGAGCTCGATGTGCAAGTG TCCTACAAGACCCTCAAAGCCAGTAGCTCGATGTGCAAGTG < 41bp 0.912980206880482 0.651932493984013 0.8289281 0.19392723 prediction 0.522095425792938 Functional Loss - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56528195 chr12:56528198 stopgain 0.975 1 24 hm5C_associated_SNPs_61984 0 0 1 0 2 ESYT1 chr12:56528212 5'GT 56528212 Upstream 15bp
chr1 156873781 156873781 1 + C T HNSC 156873779 + 156873759 156873799 41 GCCTGCGGCTGGCTGGAACTCTCAACCCCAGTGATCCCAAT GCCTGCGGCTGGCTGGAACTCTTAACCCCAGTGATCCCAAT < 41bp 0.762921224606426 0.501877953481856 0.5673549 0.2153672 prediction 0.522086542249139 Functional Loss - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156873779 chr1:156873781 synonymous SNV . 0 23 hm5C_associated_SNPs_61985 0 0 0 0 2 PEAR1 chr1:156873710 3'AG 156873710 Downstream 72bp
chr1 156873781 156873781 1 + C T HNSC 156873779 + 156873759 156873799 41 GCCTGCGGCTGGCTGGAACTCTCAACCCCAGTGATCCCAAT GCCTGCGGCTGGCTGGAACTCTTAACCCCAGTGATCCCAAT < 41bp 0.762921224606426 0.501877953481856 0.5673549 0.2153672 prediction 0.522086542249139 Functional Loss - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156873779 chr1:156873781 synonymous SNV . 0 23 hm5C_associated_SNPs_61985 0 0 0 0 2 PEAR1 chr1:156873819 5'GT 156873819 Upstream 39bp
chr6 42986291 42986291 1 + G T COAD 42986289 + 42986269 42986309 41 TGAGGGGCGCCGGAGCCACTCGGCCTGTGAGTGTTTGTTAC TGAGGGGCGCCGGAGCCACTCGTCCTGTGAGTGTTTGTTAC < 41bp 0.761040714599946 0.420423444161079 0.42060706 0.2212654 prediction 0.522081429199893 Functional Loss - KLHDC3 ENSG00000124702 CDS Human protein_coding chr6:42986289 chr6:42986291 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_61987 0 0 0 0 1 KLHDC3 chr6:42986294 5'GT 42986294 Upstream 4bp
chr1 11080565 11080565 1 + G C LUAD 11080561 + 11080541 11080581 41 AGGACATGACTGAGGATGAGCTGCGGGAGTTCTTCTCTCAG AGGACATGACTGAGGATGAGCTGCCGGAGTTCTTCTCTCAG < 41bp 0.761022531402428 0.485594845817058 0.53204167 0.21064276 prediction 0.522045062804856 Functional Loss - TARDBP ENSG00000120948 CDS Human protein_coding chr1:11080561 chr1:11080565 nonsynonymous SNV 0.967 4 25 hm5C_associated_SNPs_61991 0 0 1 0 2 TARDBP chr1:11080486 3'AG 11080486 Downstream 80bp
chr1 11080565 11080565 1 + G C LUAD 11080561 + 11080541 11080581 41 AGGACATGACTGAGGATGAGCTGCGGGAGTTCTTCTCTCAG AGGACATGACTGAGGATGAGCTGCCGGAGTTCTTCTCTCAG < 41bp 0.761022531402428 0.485594845817058 0.53204167 0.21064276 prediction 0.522045062804856 Functional Loss - TARDBP ENSG00000120948 CDS Human protein_coding chr1:11080561 chr1:11080565 nonsynonymous SNV 0.967 4 25 hm5C_associated_SNPs_61991 0 0 1 0 2 TARDBP chr1:11080656 5'GT 11080656 Upstream 92bp
chr7 36445877 36445877 1 + C T CESC 36445875 + 36445855 36445895 41 AGACCTCTGCTTTCAAATGCCTCGGCAACTCCAGTTGGCAG AGACCTCTGCTTTCAAATGCCTTGGCAACTCCAGTTGGCAG < 41bp 0.788995267107118 0.527973132952727 0.12510389 0.10646683 prediction 0.522044268308783 Functional Loss - ANLN ENSG00000011426 CDS Human protein_coding chr7:36445875 chr7:36445877 nonsynonymous SNV 0.122 1 23 hm5C_associated_SNPs_61992 0 0 1 0 1 ANLN chr7:36445790 3'AG 36445790 Downstream 88bp
chr12 16042925 16042925 1 + G T UCEC 16042922 + 16042902 16042942 41 CTGGCTCATAAACACATTGTCAAGACTGTGGATTTCACGCA CTGGCTCATAAACACATTGTCAATACTGTGGATTTCACGCA < 41bp 0.761010897796921 0.402135335435769 0.10614148 0.040778577 prediction 0.522021795593842 Functional Loss - STRAP ENSG00000023734 CDS Human protein_coding chr12:16042922 chr12:16042925 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_61997 0 0 1 0 2 STRAP chr12:16042862 3'AG 16042862 Downstream 64bp
chr12 16042925 16042925 1 + G T UCEC 16042922 + 16042902 16042942 41 CTGGCTCATAAACACATTGTCAAGACTGTGGATTTCACGCA CTGGCTCATAAACACATTGTCAATACTGTGGATTTCACGCA < 41bp 0.761010897796921 0.402135335435769 0.10614148 0.040778577 prediction 0.522021795593842 Functional Loss - STRAP ENSG00000023734 CDS Human protein_coding chr12:16042922 chr12:16042925 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_61997 0 0 1 0 2 STRAP chr12:16042943 5'GT 16042943 Upstream 19bp
chr8 42218836 42218836 1 + G C COAD 42218832 + 42218812 42218852 41 GGTGCAGAGTCCAGTGGTGACATGGATGTTCTCCTGACCCA GGTGCAGAGTCCAGTGGTGACATGCATGTTCTCCTGACCCA < 41bp 0.761005122017812 0.467511257620168 0.33987308 0.28759325 prediction 0.522010244035624 Functional Loss - POLB ENSG00000070501 CDS Human protein_coding chr8:42218832 chr8:42218836 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_62001 0 0 1 0 2 POLB chr8:42218813 3'AG 42218813 Downstream 24bp
chr8 42218836 42218836 1 + G C COAD 42218832 + 42218812 42218852 41 GGTGCAGAGTCCAGTGGTGACATGGATGTTCTCCTGACCCA GGTGCAGAGTCCAGTGGTGACATGCATGTTCTCCTGACCCA < 41bp 0.761005122017812 0.467511257620168 0.33987308 0.28759325 prediction 0.522010244035624 Functional Loss - POLB ENSG00000070501 CDS Human protein_coding chr8:42218832 chr8:42218836 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_62001 0 0 1 0 2 POLB chr8:42218883 5'GT 42218883 Upstream 48bp
chr19 6854109 6854109 1 + G T HNSC 6854106 + 6854086 6854126 41 TGGCGAGGGGAGATCTATGGCCGGGTGAGGCAGGCAGGGCT TGGCGAGGGGAGATCTATGGCCGTGTGAGGCAGGCAGGGCT < 41bp 0.760996368459207 0.377747963752168 0.90899885 0.8490797 prediction 0.521992736918415 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6854106 chr19:6854109 synonymous SNV . 0 24 hm5C_associated_SNPs_62004 0 0 0 0 1 VAV1 chr19:6854109 5'GT 6854109 Upstream 1bp
chr19 6854108 6854108 1 + G T SKCM 6854106 + 6854086 6854126 41 TGGCGAGGGGAGATCTATGGCCGGGTGAGGCAGGCAGGGCT TGGCGAGGGGAGATCTATGGCCTGGTGAGGCAGGCAGGGCT < 41bp 0.760996368459207 0.429273041379254 0.90899885 0.471106 prediction 0.521992736918415 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6854106 chr19:6854108 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_62005 0 0 0 0 1 VAV1 chr19:6854109 5'GT 6854109 Upstream 2bp
chr19 16791334 16791334 1 + C T UCEC 16791332 + 16791312 16791352 41 AGATCGCGGTGGGCATCCATCACGCCCATCACCACTACCAC AGATCGCGGTGGGCATCCATCATGCCCATCACCACTACCAC < 41bp 0.761027691470062 0.50003451656148 0.80148804 0.49730307 prediction 0.521986349817164 Functional Loss - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16791332 chr19:16791334 synonymous SNV . 0 23 hm5C_associated_SNPs_62007 0 0 1 0 1 TMEM38A chr19:16791392 5'GT 16791392 Upstream 59bp
chr1 210591627 210591627 1 + A T LIHC 210591623 + 210591603 210591643 41 CTGATGTACATGCATGCCATCTACAGCAGCATCCCCCTCCT CTGATGTACATGCATGCCATCTACTGCAGCATCCCCCTCCT < 41bp 0.760988415127614 0.436774039361531 0.3045466 0.062820554 prediction 0.521976830255228 Functional Loss - HHAT ENSG00000054392 CDS Human protein_coding chr1:210591623 chr1:210591627 nonsynonymous SNV 0.869 2 25 hm5C_associated_SNPs_62008 0 0 1 0 1 HHAT chr1:210591669 5'GT 210591669 Upstream 43bp
chr20 31894731 31894731 1 + G T LUSC 31894729 + 31894709 31894749 41 TATTTCAGGCAAATTAAGATCTGGGGTCCCAGTGTCATTGG TATTTCAGGCAAATTAAGATCTTGGGTCCCAGTGTCATTGG < 41bp 0.875756270694013 0.614781111185793 0.48295075 0.07340649 prediction 0.52195031901644 Functional Loss - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31894729 chr20:31894731 nonsynonymous SNV 0.009 4 23 hm5C_associated_SNPs_62011 0 0 0 1 2 BPIFB1 chr20:31894717 3'AG 31894717 Downstream 15bp
chr20 31894731 31894731 1 + G T LUSC 31894729 + 31894709 31894749 41 TATTTCAGGCAAATTAAGATCTGGGGTCCCAGTGTCATTGG TATTTCAGGCAAATTAAGATCTTGGGTCCCAGTGTCATTGG < 41bp 0.875756270694013 0.614781111185793 0.48295075 0.07340649 prediction 0.52195031901644 Functional Loss - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31894729 chr20:31894731 nonsynonymous SNV 0.009 4 23 hm5C_associated_SNPs_62011 0 0 0 1 2 BPIFB1 chr20:31894793 5'GT 31894793 Upstream 63bp
chr2 183581160 183581160 1 + A T rs530674162 183581156 + 183581136 183581176 41 CTCGGCCAGGCGGGGTCCGCCGCCAGGGTTTGAGGATGGGG CTCGGCCAGGCGGGGTCCGCCGCCTGGGTTTGAGGATGGGG < 41bp 0.781927993170549 0.520953363608359 0.1697138 0.07372218 prediction 0.52194925912438 Functional Loss - DNAJC10 ENSG00000077232 UTR5 Human protein_coding chr2:183581156 chr2:183581160 . . 0 25 hm5C_associated_SNPs_62012 0 0 1 0 1 DNAJC10 chr2:183581210 5'GT 183581210 Upstream 51bp
chr17 2577537 2577537 1 + T C STAD 2577536 + 2577516 2577556 41 GGTAGAATGCATTTCCTGGGCTCCAGAAAGCTCATATTCCT GGTAGAATGCATTTCCTGGGCCCCAGAAAGCTCATATTCCT < 41bp 0.773889820549078 0.512920063154747 0.2455633 0.049592465 prediction 0.521939514788662 Functional Loss - PAFAH1B1 ENSG00000007168 CDS Human protein_coding chr17:2577536 chr17:2577537 synonymous SNV . 0 22 hm5C_associated_SNPs_62013 0 0 1 0 1 PAFAH1B1 chr17:2577582 5'GT 2577582 Upstream 46bp
chr12 50500130 50500130 1 + C T HNSC 50500128 + 50500108 50500148 41 CGGAAGTGATTGGGGAGCGCCTCGGCATCCCCATGAGTGTG CGGAAGTGATTGGGGAGCGCCTTGGCATCCCCATGAGTGTG < 41bp 0.760969528005604 0.488199133864666 0.15149873 0.17552131 prediction 0.521939056011208 Functional Loss - GPD1 ENSG00000167588 CDS Human protein_coding chr12:50500128 chr12:50500130 synonymous SNV . 0 23 hm5C_associated_SNPs_62014 0 0 0 0 2 GPD1 chr12:50500071 3'AG 50500071 Downstream 60bp
chr12 50500130 50500130 1 + C T HNSC 50500128 + 50500108 50500148 41 CGGAAGTGATTGGGGAGCGCCTCGGCATCCCCATGAGTGTG CGGAAGTGATTGGGGAGCGCCTTGGCATCCCCATGAGTGTG < 41bp 0.760969528005604 0.488199133864666 0.15149873 0.17552131 prediction 0.521939056011208 Functional Loss - GPD1 ENSG00000167588 CDS Human protein_coding chr12:50500128 chr12:50500130 synonymous SNV . 0 23 hm5C_associated_SNPs_62014 0 0 0 0 2 GPD1 chr12:50500209 5'GT 50500209 Upstream 80bp
chr1 204093828 204093828 1 + C T READ 204093826 + 204093806 204093846 41 GCCCTACTATGAGGAACAGGCGCGGCTGAGCCGGCAGCACC GCCCTACTATGAGGAACAGGCGTGGCTGAGCCGGCAGCACC < 41bp 0.760965017062476 0.495022747900922 0.89048374 0.90004826 prediction 0.521930034124951 Functional Loss - SOX13 ENSG00000143842 CDS Human protein_coding chr1:204093826 chr1:204093828 nonsynonymous SNV 0.906 5 23 hm5C_associated_SNPs_62018 0 0 0 0 1 SOX13 chr1:204093769 3'AG 204093769 Downstream 60bp
chr2 70165331 70165331 1 + G C UCS 70165327 + 70165307 70165347 41 CTGACGAGCGGGGCAGCATGCAGAGCCTCGGCAGTGATGAG CTGACGAGCGGGGCAGCATGCAGACCCTCGGCAGTGATGAG < 41bp 0.760957348146753 0.478608299892087 0.87994355 0.5252894 prediction 0.521914696293506 Functional Loss - MXD1 ENSG00000059728 CDS Human protein_coding chr2:70165327 chr2:70165331 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_62020 0 0 1 0 1 MXD1 chr2:70165232 3'AG 70165232 Downstream 100bp
chr14 77710781 77710781 1 + C T STAD 77710779 + 77710759 77710799 41 TTGTCTACTTCTCCGCCTTCCTCGAGGCCCACTGGACCAGG TTGTCTACTTCTCCGCCTTCCTTGAGGCCCACTGGACCAGG < 41bp 0.814772202558871 0.553819761020993 0.41511652 0.096093 prediction 0.521904883075757 Functional Loss - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77710779 chr14:77710781 synonymous SNV . 0 23 hm5C_associated_SNPs_62022 0 0 0 0 2 TMEM63C chr14:77710692 3'AG 77710692 Downstream 90bp
chr14 77710781 77710781 1 + C T STAD 77710779 + 77710759 77710799 41 TTGTCTACTTCTCCGCCTTCCTCGAGGCCCACTGGACCAGG TTGTCTACTTCTCCGCCTTCCTTGAGGCCCACTGGACCAGG < 41bp 0.814772202558871 0.553819761020993 0.41511652 0.096093 prediction 0.521904883075757 Functional Loss - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77710779 chr14:77710781 synonymous SNV . 0 23 hm5C_associated_SNPs_62022 0 0 0 0 2 TMEM63C chr14:77710798 5'GT 77710798 Upstream 18bp
chr6 146625812 146625812 1 + C T UCEC 146625810 + 146625790 146625830 41 GTGGAAGCCAACGGGGGAATCACGATAAAGCTGCAGTCTCC GTGGAAGCCAACGGGGGAATCATGATAAAGCTGCAGTCTCC < 41bp 0.791897249871294 0.530946412996088 0.7837355 0.80597115 prediction 0.521901673750413 Functional Loss - GRM1 ENSG00000152822 CDS Human protein_coding chr6:146625810 chr6:146625812 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_62023 0 0 0 0 1 GRM1 chr6:146625747 3'AG 146625747 Downstream 66bp
chr15 59409033 59409033 1 + G T UCEC 59409030 + 59409010 59409050 41 CTTATACCAGTTCCCAAATCCGAGAAATGGAAACTCTAATT CTTATACCAGTTCCCAAATCCGATAAATGGAAACTCTAATT < 41bp 0.760950168460994 0.387485836878826 0.23070577 0.026056737 prediction 0.521900336921987 Functional Loss - CCNB2 ENSG00000157456 CDS Human protein_coding chr15:59409030 chr15:59409033 stopgain 1.000 1 24 hm5C_associated_SNPs_62025 0 0 1 0 1 CCNB2 chr15:59409125 5'GT 59409125 Upstream 93bp
chr5 35871293 35871293 1 + A C LUAD 35871289 + 35871269 35871309 41 TGCACGATGTAGCTTACCGCCAGGAAAAGGATGAAAACAAA TGCACGATGTAGCTTACCGCCAGGCAAAGGATGAAAACAAA < 41bp 0.760950124341663 0.356249714434225 0.43213812 0.43796068 prediction 0.521900248683326 Functional Loss - IL7R ENSG00000168685 CDS Human protein_coding chr5:35871289 chr5:35871293 nonsynonymous SNV 0.401 0 25 hm5C_associated_SNPs_62026 0 0 0 0 1 IL7R chr5:35871315 5'GT 35871315 Upstream 23bp
chr16 27445722 27445722 1 + G T LUAD 27445720 + 27445700 27445740 41 GATTACCTCCAGACGGTCATCTGCATCCTGGAAATGTGGAA GATTACCTCCAGACGGTCATCTTCATCCTGGAAATGTGGAA < 41bp 0.760947121434366 0.417915621888675 0.2180902 0.351336 prediction 0.521894242868731 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27445720 chr16:27445722 nonsynonymous SNV 0.021 5 23 hm5C_associated_SNPs_62028 0 0 0 0 2 IL21R chr16:27445668 3'AG 27445668 Downstream 55bp
chr16 27445722 27445722 1 + G T LUAD 27445720 + 27445700 27445740 41 GATTACCTCCAGACGGTCATCTGCATCCTGGAAATGTGGAA GATTACCTCCAGACGGTCATCTTCATCCTGGAAATGTGGAA < 41bp 0.760947121434366 0.417915621888675 0.2180902 0.351336 prediction 0.521894242868731 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27445720 chr16:27445722 nonsynonymous SNV 0.021 5 23 hm5C_associated_SNPs_62028 0 0 0 0 2 IL21R chr16:27445770 5'GT 27445770 Upstream 49bp
chr17 7907470 7907470 1 + A C STAD 7907466 + 7907446 7907486 41 AGCTGCCCTCTGACCTCAATCTGCAGCAGGTAGACGGTCCC AGCTGCCCTCTGACCTCAATCTGCCGCAGGTAGACGGTCCC < 41bp 0.760939266088673 0.342484448018487 0.24377385 0.23935935 prediction 0.521878532177346 Functional Loss - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7907466 chr17:7907470 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_62032 0 0 0 0 1 GUCY2D chr17:7907474 5'GT 7907474 Upstream 5bp
chr20 60697816 60697816 1 + G C LUSC 60697815 + 60697795 60697835 41 GAGGGCATTCTCTACACCATCGACACCGACAACTCCACCGT GAGGGCATTCTCTACACCATCCACACCGACAACTCCACCGT < 41bp 0.832617406896297 0.571681251925887 0.047907293 0.009117216 prediction 0.521872309940819 Functional Loss - LSM14B ENSG00000149657 CDS Human protein_coding chr20:60697815 chr20:60697816 nonsynonymous SNV 0.781 3 22 hm5C_associated_SNPs_62035 0 0 1 0 1 LSM14B chr20:60697849 5'GT 60697849 Upstream 34bp
chr11 126176543 126176543 1 + G T LUSC 126176540 + 126176520 126176560 41 AGACGCCATTTCAGGTGGAACAGGTGGCTCAGCTCCTGACG AGACGCCATTTCAGGTGGAACAGTTGGCTCAGCTCCTGACG < 41bp 0.760934531059933 0.354109060197063 0.903834 0.39659977 prediction 0.521869062119866 Functional Loss - DCPS ENSG00000110063 CDS Human protein_coding chr11:126176540 chr11:126176543 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_62036 0 0 1 0 2 DCPS chr11:126176465 3'AG 126176465 Downstream 79bp
chr11 126176543 126176543 1 + G T LUSC 126176540 + 126176520 126176560 41 AGACGCCATTTCAGGTGGAACAGGTGGCTCAGCTCCTGACG AGACGCCATTTCAGGTGGAACAGTTGGCTCAGCTCCTGACG < 41bp 0.760934531059933 0.354109060197063 0.903834 0.39659977 prediction 0.521869062119866 Functional Loss - DCPS ENSG00000110063 CDS Human protein_coding chr11:126176540 chr11:126176543 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_62036 0 0 1 0 2 DCPS chr11:126176639 5'GT 126176639 Upstream 97bp
chr16 57778405 57778405 1 + G C BLCA 57778401 + 57778381 57778421 41 CAGTCGGGCTCCATCCGTGTCTGGGACCTGGAAGCTGCCAA CAGTCGGGCTCCATCCGTGTCTGGCACCTGGAAGCTGCCAA < 41bp 0.817004426946361 0.556070061299255 0.14854237 0.07490829 prediction 0.521868731294212 Functional Loss - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57778401 chr16:57778405 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_62037 0 0 1 0 2 KATNB1 chr16:57778306 3'AG 57778306 Downstream 100bp
chr16 57778405 57778405 1 + G C BLCA 57778401 + 57778381 57778421 41 CAGTCGGGCTCCATCCGTGTCTGGGACCTGGAAGCTGCCAA CAGTCGGGCTCCATCCGTGTCTGGCACCTGGAAGCTGCCAA < 41bp 0.817004426946361 0.556070061299255 0.14854237 0.07490829 prediction 0.521868731294212 Functional Loss - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57778401 chr16:57778405 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_62037 0 0 1 0 2 KATNB1 chr16:57778423 5'GT 57778423 Upstream 19bp
chr9 130151397 130151397 1 + G T UCEC 130151395 + 130151375 130151415 41 GCAGGACCCGCAGGGAACTACTGGGTAATGGTTCTCAATCC GCAGGACCCGCAGGGAACTACTTGGTAATGGTTCTCAATCC < 41bp 0.76090957442595 0.432709781566943 0.5917708 0.14052117 prediction 0.5218191488519 Functional Loss - GARNL3 ENSG00000136895 CDS Human protein_coding chr9:130151395 chr9:130151397 synonymous SNV . 0 23 hm5C_associated_SNPs_62041 0 0 0 0 1 GARNL3 chr9:130151398 5'GT 130151398 Upstream 2bp
chr1 196884211 196884211 1 + G T LUSC 196884208 + 196884188 196884228 41 GCCAGTCCTACTATGAACTTCAGGGTTCTAATTATGTAACA GCCAGTCCTACTATGAACTTCAGTGTTCTAATTATGTAACA < 41bp 0.76090741758087 0.385164962849379 0.3157856 0.077831596 prediction 0.52181483516174 Functional Loss - CFHR4 ENSG00000134365 CDS Human protein_coding chr1:196884208 chr1:196884211 nonsynonymous SNV 0.003 3 24 hm5C_associated_SNPs_62043 0 0 0 0 1 CFHR4 chr1:196884268 5'GT 196884268 Upstream 58bp
chr4 57883833 57883833 1 + T C LIHC 57883832 + 57883812 57883852 41 GGCCCATGTTCTCTATTATCCTCAAAAGCCACTTGTGACTA GGCCCATGTTCTCTATTATCCCCAAAAGCCACTTGTGACTA < 41bp 0.767988570244169 0.507083661196865 0.23110881 0.32802093 prediction 0.521809818094608 Functional Loss - POLR2B ENSG00000047315 CDS Human protein_coding chr4:57883832 chr4:57883833 synonymous SNV . 0 22 hm5C_associated_SNPs_62045 0 0 1 0 1 POLR2B chr4:57883894 5'GT 57883894 Upstream 62bp
chr4 88379074 88379074 1 + G T SARC 88379072 + 88379052 88379092 41 GGGTGGACATCAATGATAAACTGAAGCTTTATGCCAGTCAC GGGTGGACATCAATGATAAACTTAAGCTTTATGCCAGTCAC < 41bp 0.838740455554457 0.577836154987119 0.18464506 0.18729618 prediction 0.521808601134677 Functional Loss - NUDT9 ENSG00000170502 CDS Human protein_coding chr4:88379072 chr4:88379074 synonymous SNV . 0 23 hm5C_associated_SNPs_62046 0 0 1 0 1 NUDT9 chr4:88378995 3'AG 88378995 Downstream 80bp
chr6 43488482 43488482 1 + C T GBM 43488480 + 43488460 43488500 41 GGAGTTGAGCAGGTGCTTCTCACCTGGTGTTATTGAGGTGC GGAGTTGAGCAGGTGCTTCTCATCTGGTGTTATTGAGGTGC < 41bp 0.786725095846026 0.525823132037677 0.41272402 0.3573486 prediction 0.521803927616697 Functional Loss - POLR1C ENSG00000171453 CDS Human protein_coding chr6:43488480 chr6:43488482 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_62048 0 0 1 0 1 POLR1C chr6:43488512 5'GT 43488512 Upstream 31bp
chr9 133945164 133945164 1 + A T COAD 133945160 + 133945140 133945180 41 GCTACAAATGTGACCGCTGCCACGACAACTTCTTCCTCACG GCTACAAATGTGACCGCTGCCACGTCAACTTCTTCCTCACG < 41bp 0.760882515731133 0.434716433401455 0.16037351 0.087075055 prediction 0.521765031462265 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133945160 chr9:133945164 nonsynonymous SNV 0.970 1 25 hm5C_associated_SNPs_62051 0 0 0 0 1 LAMC3 chr9:133945237 5'GT 133945237 Upstream 74bp
chr17 79769393 79769393 1 + A C UCEC 79769389 + 79769369 79769409 41 TGCTCAGGACCCGCTACAGCCAGAAAATTGGCGACGACCTC TGCTCAGGACCCGCTACAGCCAGACAATTGGCGACGACCTC < 41bp 0.760878348282056 0.347809812441188 0.86616915 0.8561655 prediction 0.521756696564112 Functional Loss - GCGR ENSG00000215644 CDS Human protein_coding chr17:79769389 chr17:79769393 nonsynonymous SNV 0.958 0 25 hm5C_associated_SNPs_62052 0 0 0 0 1 GCGR chr17:79769436 5'GT 79769436 Upstream 44bp
chr7 5331444 5331444 1 + G T LUAD 5331442 + 5331422 5331462 41 GCTGTGGGCACCGTGGCCTTCGGCTGCACAGGTAGGAACCG GCTGTGGGCACCGTGGCCTTCGTCTGCACAGGTAGGAACCG < 41bp 0.760851194560936 0.407056920805548 0.90458256 0.31283134 prediction 0.521702389121872 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5331442 chr7:5331444 nonsynonymous SNV 0.994 5 23 hm5C_associated_SNPs_62056 0 0 1 0 2 SLC29A4 chr7:5331361 3'AG 5331361 Downstream 84bp
chr7 5331444 5331444 1 + G T LUAD 5331442 + 5331422 5331462 41 GCTGTGGGCACCGTGGCCTTCGGCTGCACAGGTAGGAACCG GCTGTGGGCACCGTGGCCTTCGTCTGCACAGGTAGGAACCG < 41bp 0.760851194560936 0.407056920805548 0.90458256 0.31283134 prediction 0.521702389121872 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5331442 chr7:5331444 nonsynonymous SNV 0.994 5 23 hm5C_associated_SNPs_62056 0 0 1 0 2 SLC29A4 chr7:5331452 5'GT 5331452 Upstream 9bp
chr6 24145811 24145811 1 + C T LAML 24145809 + 24145789 24145829 41 CAGGTACAGTTTTTGTGATCCTCGGATTGACTGTTCTGGCA CAGGTACAGTTTTTGTGATCCTTGGATTGACTGTTCTGGCA < 41bp 0.760850604663087 0.497127143615072 0.32827622 0.2635513 prediction 0.521701209326174 Functional Loss - NRSN1 ENSG00000152954 CDS Human protein_coding chr6:24145809 chr6:24145811 synonymous SNV . 0 23 hm5C_associated_SNPs_62057 0 0 0 0 1 NRSN1 chr6:24145776 3'AG 24145776 Downstream 36bp
chr8 126021463 126021463 1 + C T LUSC 126021461 + 126021441 126021481 41 GCTGAACTTATTTTAGCTAACCCGAGTCCAGTTCTCATCTA GCTGAACTTATTTTAGCTAACCTGAGTCCAGTTCTCATCTA < 41bp 0.806649757724579 0.545802740463949 0.13547924 0.21410236 prediction 0.52169403452126 Functional Loss - SQLE ENSG00000104549 CDS Human protein_coding chr8:126021461 chr8:126021463 nonsynonymous SNV 0.720 2 23 hm5C_associated_SNPs_62058 0 0 1 0 1 SQLE chr8:126021414 3'AG 126021414 Downstream 50bp
chr5 148687115 148687115 1 + G C LIHC 148687111 + 148687091 148687131 41 GCAGGATATGTGCCTTCCTGCTGCGGAAAAAGCGTTTCGGG GCAGGATATGTGCCTTCCTGCTGCCGAAAAAGCGTTTCGGG < 41bp 0.76083062161206 0.472237376750771 0.30536723 0.2089501 prediction 0.521661243224119 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148687111 chr5:148687115 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_62062 0 0 0 0 1 AFAP1L1 chr5:148687176 5'GT 148687176 Upstream 62bp
chr22 32241152 32241152 1 + G T UCEC 32241149 + 32241129 32241169 41 ACGAGGACGAGTGGCAACTCCTGGATGGTTTTGTCCGCTTT ACGAGGACGAGTGGCAACTCCTGTATGGTTTTGTCCGCTTT < 41bp 0.885955485522862 0.625158321250265 0.58782315 0.10297787 prediction 0.521594328545194 Functional Loss - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32241149 chr22:32241152 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_62064 0 0 0 0 1 DEPDC5 chr22:32241223 5'GT 32241223 Upstream 72bp
chr1 79102785 79102785 1 + G T SARC 79102782 + 79102762 79102802 41 ACCTCTCCATCTCTGAAGGACAGGATTCACTGTGTGGCTTA ACCTCTCCATCTCTGAAGGACAGTATTCACTGTGTGGCTTA < 41bp 0.760793832933517 0.376991960255331 0.11042914 0.04156658 prediction 0.521587665867034 Functional Loss - IFI44L ENSG00000137959 CDS Human protein_coding chr1:79102782 chr1:79102785 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_62065 0 0 0 0 1 IFI44L chr1:79102717 3'AG 79102717 Downstream 69bp
chr1 79102784 79102784 1 + G T UCEC 79102782 + 79102762 79102802 41 ACCTCTCCATCTCTGAAGGACAGGATTCACTGTGTGGCTTA ACCTCTCCATCTCTGAAGGACATGATTCACTGTGTGGCTTA < 41bp 0.760793832933517 0.432621841592475 0.11042914 0.03913924 prediction 0.521587665867034 Functional Loss - IFI44L ENSG00000137959 CDS Human protein_coding chr1:79102782 chr1:79102784 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_62066 0 0 0 0 1 IFI44L chr1:79102717 3'AG 79102717 Downstream 68bp
chr2 79253893 79253893 1 + C T CESC 79253891 + 79253871 79253911 41 CGGATCAGCTGTCCCAAAGGCTCCAAGGCCTATGGCTCCCC CGGATCAGCTGTCCCAAAGGCTTCAAGGCCTATGGCTCCCC < 41bp 0.816618362076284 0.555826302073817 0.94183683 0.16606385 prediction 0.521584120004933 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79253891 chr2:79253893 nonsynonymous SNV 0.181 3 23 hm5C_associated_SNPs_62067 0 0 0 0 2 REG3G chr2:79253839 3'AG 79253839 Downstream 55bp
chr2 79253893 79253893 1 + C T CESC 79253891 + 79253871 79253911 41 CGGATCAGCTGTCCCAAAGGCTCCAAGGCCTATGGCTCCCC CGGATCAGCTGTCCCAAAGGCTTCAAGGCCTATGGCTCCCC < 41bp 0.816618362076284 0.555826302073817 0.94183683 0.16606385 prediction 0.521584120004933 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79253891 chr2:79253893 nonsynonymous SNV 0.181 3 23 hm5C_associated_SNPs_62067 0 0 0 0 2 REG3G chr2:79253957 5'GT 79253957 Upstream 65bp
chr1 161198097 161198097 1 + G C rs61731576 161198096 + 161198076 161198116 41 GACACTGGCTGGGAAGTACTCGGGTATGGGGCGAAGTGAAG GACACTGGCTGGGAAGTACTCCGGTATGGGGCGAAGTGAAG < 41bp 0.839538293608539 0.578750463316703 0.8826611 0.3126312 prediction 0.521575660583672 Functional Loss - TOMM40L ENSG00000158882 CDS Human protein_coding chr1:161198096 chr1:161198097 synonymous SNV . 0 22 hm5C_associated_SNPs_62069 0 0 1 2 1 TOMM40L chr1:161198098 5'GT 161198098 Upstream 2bp
chr6 44148528 44148528 1 + G T ESCA 44148526 + 44148506 44148546 41 GAGCTCCAGAGGCTGCTCAACAGGATGGCCATCAAATGTGA GAGCTCCAGAGGCTGCTCAACATGATGGCCATCAAATGTGA < 41bp 0.882780295464868 0.621996637673408 0.26341978 0.033652037 prediction 0.521567315582921 Functional Loss - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44148526 chr6:44148528 nonsynonymous SNV 0.153 2 23 hm5C_associated_SNPs_62070 0 0 0 0 2 CAPN11 chr6:44148485 3'AG 44148485 Downstream 44bp
chr6 44148528 44148528 1 + G T ESCA 44148526 + 44148506 44148546 41 GAGCTCCAGAGGCTGCTCAACAGGATGGCCATCAAATGTGA GAGCTCCAGAGGCTGCTCAACATGATGGCCATCAAATGTGA < 41bp 0.882780295464868 0.621996637673408 0.26341978 0.033652037 prediction 0.521567315582921 Functional Loss - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44148526 chr6:44148528 nonsynonymous SNV 0.153 2 23 hm5C_associated_SNPs_62070 0 0 0 0 2 CAPN11 chr6:44148542 5'GT 44148542 Upstream 15bp
chr8 72966087 72966087 1 - C A LUAD 72966090 - 72966070 72966110 41 TTTACCAGTGACCACAATGGCTGGACAGCTTTGCATCATGC TTTACCAGTGACCACAATGGCTGTACAGCTTTGCATCATGC < 41bp 0.760771778304145 0.38192330416319 0.5451456 0.16537711 prediction 0.521543556608289 Functional Loss - TRPA1 ENSG00000104321 CDS Human protein_coding chr8:72966090 chr8:72966087 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_62074 0 0 0 0 2 TRPA1 chr8:72965988 5'GT 72965988 Upstream 100bp
chr8 72966087 72966087 1 - C A LUAD 72966090 - 72966070 72966110 41 TTTACCAGTGACCACAATGGCTGGACAGCTTTGCATCATGC TTTACCAGTGACCACAATGGCTGTACAGCTTTGCATCATGC < 41bp 0.760771778304145 0.38192330416319 0.5451456 0.16537711 prediction 0.521543556608289 Functional Loss - TRPA1 ENSG00000104321 CDS Human protein_coding chr8:72966090 chr8:72966087 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_62074 0 0 0 0 2 TRPA1 chr8:72966102 3'AG 72966102 Downstream 16bp
chr18 47110073 47110073 1 + T C LIHC 47110072 + 47110052 47110092 41 GGAGTTTCGCAGCTACCTGTCTCAACCCCGCAACCCCGGAC GGAGTTTCGCAGCTACCTGTCCCAACCCCGCAACCCCGGAC < 41bp 0.760765490052545 0.493652642778707 0.18918726 0.14509472 prediction 0.52153098010509 Functional Loss - LIPG ENSG00000101670 CDS Human protein_coding chr18:47110072 chr18:47110073 synonymous SNV . 0 22 hm5C_associated_SNPs_62075 0 0 1 0 1 LIPG chr18:47110144 5'GT 47110144 Upstream 72bp
chr17 48560723 48560723 1 + C T SARC 48560721 + 48560701 48560741 41 GGGCCCATGGACGATTTATGCCCCAGGGGGCTGGAGGCCAC GGGCCCATGGACGATTTATGCCTCAGGGGGCTGGAGGCCAC < 41bp 0.817076932366585 0.556316060535729 0.30057016 0.16450664 prediction 0.521521743661712 Functional Loss - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48560721 chr17:48560723 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_62076 0 0 1 0 1 RSAD1 chr17:48560701 3'AG 48560701 Downstream 23bp
chrX 153050816 153050816 1 + C T UCEC 153050814 + 153050794 153050834 41 AGCTGCGGCACATCCACAATCTCAAGCACTGGGGCCTGTAC AGCTGCGGCACATCCACAATCTTAAGCACTGGGGCCTGTAC < 41bp 0.766234837941047 0.505481304735441 0.22887346 0.35004008 prediction 0.521507066411212 Functional Loss - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153050814 chrX:153050816 synonymous SNV . 0 23 hm5C_associated_SNPs_62079 0 0 0 0 1 SRPK3 chrX:153050791 3'AG 153050791 Downstream 26bp
chr10 103908157 103908157 1 + C T COAD 103908155 + 103908135 103908175 41 CTGTAGTTCCTCTGGACGTTCTCGAAGATGCTCTTCCTCTT CTGTAGTTCCTCTGGACGTTCTTGAAGATGCTCTTCCTCTT < 41bp 0.821667611967252 0.560915042464327 0.42387003 0.11237773 prediction 0.52150513900585 Functional Loss - PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103908155 chr10:103908157 stopgain 0.956 0 23 hm5C_associated_SNPs_62080 0 0 1 0 1 PPRC1 chr10:103908129 3'AG 103908129 Downstream 29bp
chr4 15713434 15713434 1 + C T UCEC 15713432 + 15713412 15713452 41 TGTCTACTTACCCCTTAGGACTCGATTACCAATCCTGCCCT TGTCTACTTACCCCTTAGGACTTGATTACCAATCCTGCCCT < 41bp 0.799541028843882 0.538795391302991 0.41368604 0.14533645 prediction 0.521491275081782 Functional Loss - BST1 ENSG00000109743 CDS Human protein_coding chr4:15713432 chr4:15713434 synonymous SNV . 0 23 hm5C_associated_SNPs_62082 0 0 0 0 2 BST1 chr4:15713430 3'AG 15713430 Downstream 5bp
chr4 15713434 15713434 1 + C T UCEC 15713432 + 15713412 15713452 41 TGTCTACTTACCCCTTAGGACTCGATTACCAATCCTGCCCT TGTCTACTTACCCCTTAGGACTTGATTACCAATCCTGCCCT < 41bp 0.799541028843882 0.538795391302991 0.41368604 0.14533645 prediction 0.521491275081782 Functional Loss - BST1 ENSG00000109743 CDS Human protein_coding chr4:15713432 chr4:15713434 synonymous SNV . 0 23 hm5C_associated_SNPs_62082 0 0 0 0 2 BST1 chr4:15713512 5'GT 15713512 Upstream 79bp
chr19 36166745 36166745 1 + G T UCEC 36166742 + 36166722 36166762 41 CCCCCTGCTTTTCACTCTAGCAAGAATGCTGTGGCACATCT CCCCCTGCTTTTCACTCTAGCAATAATGCTGTGGCACATCT < 41bp 0.76074126206314 0.369369343061797 0.49012226 0.17716822 prediction 0.521482524126281 Functional Loss - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36166742 chr19:36166745 stopgain 0.984 0 24 hm5C_associated_SNPs_62084 0 0 0 0 1 UPK1A chr19:36166742 3'AG 36166742 Downstream 4bp
chr20 58567483 58567483 1 + C T SKCM 58567481 + 58567461 58567501 41 TGGGTCAGCGTCGACAAAAACTCCGGAGTGGTCATCACCGT TGGGTCAGCGTCGACAAAAACTTCGGAGTGGTCATCACCGT < 41bp 0.798488216418326 0.537748001318322 0.31047717 0.18456137 prediction 0.521480430200008 Functional Loss - CDH26 ENSG00000124215 CDS Human protein_coding chr20:58567481 chr20:58567483 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_62085 0 0 0 0 2 CDH26 chr20:58567433 3'AG 58567433 Downstream 51bp
chr20 58567483 58567483 1 + C T SKCM 58567481 + 58567461 58567501 41 TGGGTCAGCGTCGACAAAAACTCCGGAGTGGTCATCACCGT TGGGTCAGCGTCGACAAAAACTTCGGAGTGGTCATCACCGT < 41bp 0.798488216418326 0.537748001318322 0.31047717 0.18456137 prediction 0.521480430200008 Functional Loss - CDH26 ENSG00000124215 CDS Human protein_coding chr20:58567481 chr20:58567483 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_62085 0 0 0 0 2 CDH26 chr20:58567575 5'GT 58567575 Upstream 93bp
chr2 47044405 47044405 1 + G T UCEC 47044403 + 47044383 47044423 41 CCAGCTTTGAGAGGCAAATCCAGAAATCAGCCCTCCAGCTT CCAGCTTTGAGAGGCAAATCCATAAATCAGCCCTCCAGCTT < 41bp 0.87573432070582 0.615011482983825 0.6267937 0.15078747 prediction 0.52144567544399 Functional Loss - LINC01118 ENSG00000222005 CDS Human lincRNA chr2:47044403 chr2:47044405 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_62087 0 0 0 0 1 LINC01118 chr2:47044387 3'AG 47044387 Downstream 19bp
chr20 33514942 33514942 1 + C T UCEC 33514940 + 33514920 33514960 41 TTGCTCAGAATGACCATGACCTCGGGGACATGTCTACTGTG TTGCTCAGAATGACCATGACCTTGGGGACATGTCTACTGTG < 41bp 0.760718739160513 0.48932121072988 0.10824004 0.1423442 prediction 0.521437478321026 Functional Loss - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33514940 chr20:33514942 synonymous SNV . 0 23 hm5C_associated_SNPs_62089 0 0 1 1 1 ACSS2 chr20:33514890 3'AG 33514890 Downstream 53bp
chr16 69143365 69143365 1 + G T LUSC 69143362 + 69143342 69143382 41 GCCTGTTTGCCCTGGCAGTGCTGGGTGGCATCCTGGCAGCC GCCTGTTTGCCCTGGCAGTGCTGTGTGGCATCCTGGCAGCC < 41bp 0.915993787690629 0.655287877269946 0.8701335 0.19973063 prediction 0.521411820841365 Functional Loss - HAS3 ENSG00000103044 CDS Human protein_coding chr16:69143362 chr16:69143365 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_62092 0 0 0 0 1 HAS3 chr16:69143299 3'AG 69143299 Downstream 67bp
chr14 100995439 100995439 1 + C T UCEC 100995437 + 100995417 100995457 41 TGCCCCAGCCTCGCCTTGCACCCGAGAGAGCCCGTGTTCCT TGCCCCAGCCTCGCCTTGCACCTGAGAGAGCCCGTGTTCCT < 41bp 0.806165045870274 0.545471390594246 0.083761305 0.084270775 prediction 0.521387310552057 Functional Loss - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100995437 chr14:100995439 nonsynonymous SNV 0.522 3 23 hm5C_associated_SNPs_62095 0 0 0 0 1 WDR25 chr14:100995405 3'AG 100995405 Downstream 35bp
chr19 57705329 57705329 1 + G T UCEC 57705327 + 57705307 57705347 41 TAGCTCAGCGGACCCTGTACCAGGAGGTGATGCTGGAAAAC TAGCTCAGCGGACCCTGTACCATGAGGTGATGCTGGAAAAC < 41bp 0.868049220342054 0.607366928954493 0.9397155 0.83119774 prediction 0.521364582775123 Functional Loss - ZNF264 ENSG00000083844 CDS Human protein_coding chr19:57705327 chr19:57705329 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_62097 0 0 1 0 2 ZNF264 chr19:57705243 3'AG 57705243 Downstream 87bp
chr19 57705329 57705329 1 + G T UCEC 57705327 + 57705307 57705347 41 TAGCTCAGCGGACCCTGTACCAGGAGGTGATGCTGGAAAAC TAGCTCAGCGGACCCTGTACCATGAGGTGATGCTGGAAAAC < 41bp 0.868049220342054 0.607366928954493 0.9397155 0.83119774 prediction 0.521364582775123 Functional Loss - ZNF264 ENSG00000083844 CDS Human protein_coding chr19:57705327 chr19:57705329 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_62097 0 0 1 0 2 ZNF264 chr19:57705369 5'GT 57705369 Upstream 41bp
chr10 95552643 95552643 1 + C T SKCM 95552641 + 95552621 95552661 41 CGCAAAATCAATAGTCTCTCCTCGAAGGATTTTGATTGCAT CGCAAAATCAATAGTCTCTCCTTGAAGGATTTTGATTGCAT < 41bp 0.760672050735175 0.477449782044597 0.907918 0.055055946 prediction 0.521344101470349 Functional Loss - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95552641 chr10:95552643 nonsynonymous SNV 0.987 0 23 hm5C_associated_SNPs_62101 0 0 0 0 1 LGI1 chr10:95552669 5'GT 95552669 Upstream 27bp
chr1 2333730 2333730 1 + G T UCEC 2333728 + 2333708 2333748 41 TCCCGGTGTTCTGGCCGATTCTGGTGATGTACTTCATCATG TCCCGGTGTTCTGGCCGATTCTTGTGATGTACTTCATCATG < 41bp 0.760666906836916 0.434611644616404 0.18484175 0.042188495 prediction 0.521333813673831 Functional Loss - RER1 ENSG00000157916 CDS Human protein_coding chr1:2333728 chr1:2333730 nonsynonymous SNV 0.976 1 23 hm5C_associated_SNPs_62102 0 0 1 0 2 RER1 chr1:2333646 3'AG 2333646 Downstream 85bp
chr1 2333730 2333730 1 + G T UCEC 2333728 + 2333708 2333748 41 TCCCGGTGTTCTGGCCGATTCTGGTGATGTACTTCATCATG TCCCGGTGTTCTGGCCGATTCTTGTGATGTACTTCATCATG < 41bp 0.760666906836916 0.434611644616404 0.18484175 0.042188495 prediction 0.521333813673831 Functional Loss - RER1 ENSG00000157916 CDS Human protein_coding chr1:2333728 chr1:2333730 nonsynonymous SNV 0.976 1 23 hm5C_associated_SNPs_62102 0 0 1 0 2 RER1 chr1:2333781 5'GT 2333781 Upstream 52bp
chr6 163735933 163735933 1 + G T STAD 163735930 + 163735910 163735950 41 GGGACTTGATCCAGGAGACACTGGAGGCCTTCGAGCGCTAC GGGACTTGATCCAGGAGACACTGTAGGCCTTCGAGCGCTAC < 41bp 0.76066208631448 0.437603580196893 0.67538613 0.16991317 prediction 0.52132417262896 Functional Loss - PACRG ENSG00000112530 CDS Human protein_coding chr6:163735930 chr6:163735933 stopgain 0.992 1 24 hm5C_associated_SNPs_62104 0 0 0 0 1 PACRG chr6:163735859 3'AG 163735859 Downstream 75bp
chr5 137518142 137518142 1 + C T GBM 137518140 + 137518120 137518160 41 ACTAACTCAGGGAAAACCCACACGATTCAAGGTGAGTAGTA ACTAACTCAGGGAAAACCCACATGATTCAAGGTGAGTAGTA < 41bp 0.798266885739293 0.537617104554887 0.18700305 0.21007586 prediction 0.521299562368812 Functional Loss - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137518140 chr5:137518142 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_62108 0 0 1 0 1 KIF20A chr5:137518150 5'GT 137518150 Upstream 9bp
chr19 13867076 13867076 1 + G T UCEC 13867074 + 13867054 13867094 41 AGCGGGCTCGGAAGCTGTCACAGGGCATCCTCATCATCCGG AGCGGGCTCGGAAGCTGTCACATGGCATCCTCATCATCCGG < 41bp 0.885643914299472 0.62499869014658 0.4994723 0.08392182 prediction 0.521290448305784 Functional Loss - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13867074 chr19:13867076 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_62110 0 0 0 0 2 CCDC130 chr19:13867011 3'AG 13867011 Downstream 66bp
chr19 13867076 13867076 1 + G T UCEC 13867074 + 13867054 13867094 41 AGCGGGCTCGGAAGCTGTCACAGGGCATCCTCATCATCCGG AGCGGGCTCGGAAGCTGTCACATGGCATCCTCATCATCCGG < 41bp 0.885643914299472 0.62499869014658 0.4994723 0.08392182 prediction 0.521290448305784 Functional Loss - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13867074 chr19:13867076 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_62110 0 0 0 0 2 CCDC130 chr19:13867093 5'GT 13867093 Upstream 18bp
chr17 48559752 48559752 1 + A C UCEC 48559748 + 48559728 48559768 41 GAGCTCGCAGCTGAGATGTACCAGAGGGGCCGGGCTGTCCT GAGCTCGCAGCTGAGATGTACCAGCGGGGCCGGGCTGTCCT < 41bp 0.760641101721032 0.357206647315232 0.9156257 0.8443621 prediction 0.521282203442064 Functional Loss - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48559748 chr17:48559752 synonymous SNV . 0 25 hm5C_associated_SNPs_62111 0 0 1 0 1 RSAD1 chr17:48559817 5'GT 48559817 Upstream 66bp
chr9 27209162 27209162 1 + G T UCEC 27209160 + 27209140 27209180 41 ACAGGGACTTTGCAGGAGAACTGGAAGTTCTTTGTAAACTT ACAGGGACTTTGCAGGAGAACTTGAAGTTCTTTGTAAACTT < 41bp 0.760624852589578 0.459939416898308 0.24088386 0.13482317 prediction 0.521249705179156 Functional Loss - TEK ENSG00000120156 CDS Human protein_coding chr9:27209160 chr9:27209162 synonymous SNV . 0 23 hm5C_associated_SNPs_62114 0 0 0 0 1 TEK chr9:27209119 3'AG 27209119 Downstream 44bp
chr3 157271104 157271104 1 + G T STAD 157271102 + 157271082 157271122 41 AAACTCAAGCACTGATACGTCCGGAGAGCACTTGACCTGCC AAACTCAAGCACTGATACGTCCTGAGAGCACTTGACCTGCC < 41bp 0.857613365703964 0.597008522848373 0.13627401 0.07459262 prediction 0.521209685711183 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271102 chr3:157271104 stopgain 0.000 0 23 hm5C_associated_SNPs_62116 0 0 0 12 1 PQLC2L chr3:157271129 5'GT 157271129 Upstream 26bp
chr19 41622398 41622398 1 + G T SKCM 41622396 + 41622376 41622416 41 GCTCCATGTACACAGTGCACCTGGGACCCAGGCGGGTGGTG GCTCCATGTACACAGTGCACCTTGGACCCAGGCGGGTGGTG < 41bp 0.760586947959816 0.395663476664002 0.24494794 0.026332825 prediction 0.521173895919631 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41622396 chr19:41622398 synonymous SNV . 0 23 hm5C_associated_SNPs_62120 0 0 0 0 1 CYP2F1 chr19:41622360 3'AG 41622360 Downstream 39bp
chr19 30308132 30308132 1 + C T UCEC 30308130 + 30308110 30308150 41 GATGACCGGGTTTACCCAAACTCAACGTGCAAGCCTCGGAT GATGACCGGGTTTACCCAAACTTAACGTGCAAGCCTCGGAT < 41bp 0.80948425682717 0.548902755645769 0.7954172 0.24767572 prediction 0.521163002362802 Functional Loss - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30308130 chr19:30308132 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_62121 0 0 1 0 2 CCNE1 chr19:30308044 3'AG 30308044 Downstream 89bp
chr19 30308132 30308132 1 + C T UCEC 30308130 + 30308110 30308150 41 GATGACCGGGTTTACCCAAACTCAACGTGCAAGCCTCGGAT GATGACCGGGTTTACCCAAACTTAACGTGCAAGCCTCGGAT < 41bp 0.80948425682717 0.548902755645769 0.7954172 0.24767572 prediction 0.521163002362802 Functional Loss - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30308130 chr19:30308132 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_62121 0 0 1 0 2 CCNE1 chr19:30308189 5'GT 30308189 Upstream 58bp
chrX 135290787 135290787 1 + G T UCEC 135290784 + 135290764 135290804 41 GCCAAGAAGTGTGCTGGATGCAAGAACCCCATCACTGGTAG GCCAAGAAGTGTGCTGGATGCAATAACCCCATCACTGGTAG < 41bp 0.891181212087167 0.630601974879507 0.17163044 0.08347967 prediction 0.521158474415321 Functional Loss - FHL1 ENSG00000022267 CDS Human protein_coding chrX:135290784 chrX:135290787 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_62122 0 0 1 0 1 FHL1 chrX:135290800 5'GT 135290800 Upstream 14bp
chr11 44146380 44146380 1 + A C PRAD 44146376 + 44146356 44146396 41 TCCTGTCATCTCAGGTGGGTCTCCATCCTGAGTACAGAGAG TCCTGTCATCTCAGGTGGGTCTCCCTCCTGAGTACAGAGAG < 41bp 0.760574768807516 0.323465113894851 0.9339206 0.19843891 prediction 0.521149537615033 Functional Loss - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44146376 chr11:44146380 nonsynonymous SNV 0.380 4 25 hm5C_associated_SNPs_62123 0 0 1 0 1 EXT2 chr11:44146339 3'AG 44146339 Downstream 42bp
chr2 27663717 27663717 1 + G T UCEC 27663715 + 27663695 27663735 41 CCTTTGGGCTGCCTCGGCCCCAGCAGCCACAGCAGGAGGAG CCTTTGGGCTGCCTCGGCCCCATCAGCCACAGCAGGAGGAG < 41bp 0.873214995633907 0.612649230888254 0.14825222 0.057067394 prediction 0.521131529491304 Functional Loss - NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663715 chr2:27663717 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_62125 0 0 1 0 2 NRBP1 chr2:27663672 3'AG 27663672 Downstream 46bp
chr2 27663717 27663717 1 + G T UCEC 27663715 + 27663695 27663735 41 CCTTTGGGCTGCCTCGGCCCCAGCAGCCACAGCAGGAGGAG CCTTTGGGCTGCCTCGGCCCCATCAGCCACAGCAGGAGGAG < 41bp 0.873214995633907 0.612649230888254 0.14825222 0.057067394 prediction 0.521131529491304 Functional Loss - NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663715 chr2:27663717 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_62125 0 0 1 0 2 NRBP1 chr2:27663807 5'GT 27663807 Upstream 91bp
chr6 16144010 16144010 1 + G T UCEC 16144008 + 16143988 16144028 41 GTCACCAAGGAATCTGGGAACAGCATCGTGCTCTTGTTTAA GTCACCAAGGAATCTGGGAACATCATCGTGCTCTTGTTTAA < 41bp 0.760552870986395 0.425644208541452 0.049116343 0.020332932 prediction 0.52110574197279 Functional Loss - MYLIP ENSG00000007944 CDS Human protein_coding chr6:16144008 chr6:16144010 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_62127 0 0 1 0 1 MYLIP chr6:16143930 3'AG 16143930 Downstream 81bp
chr1 57378109 57378109 1 + A T LGG 57378105 + 57378085 57378125 41 ATCCACGAGGTGCTGCGGCACACAAGCCTGGGGCCTCTGGA ATCCACGAGGTGCTGCGGCACACATGCCTGGGGCCTCTGGA < 41bp 0.760551175702127 0.451565586624442 0.3357427 0.33909392 prediction 0.521102351404254 Functional Loss - C8A ENSG00000157131 CDS Human protein_coding chr1:57378105 chr1:57378109 nonsynonymous SNV 0.253 3 25 hm5C_associated_SNPs_62128 0 0 1 0 1 C8A chr1:57378076 3'AG 57378076 Downstream 34bp
chr2 187541957 187541957 1 + G T UCEC 187541954 + 187541934 187541974 41 TTAAACGGGTCCGGCCACCTCAAGAAGAACAAGAAAGGGAG TTAAACGGGTCCGGCCACCTCAATAAGAACAAGAAAGGGAG < 41bp 0.760547805956066 0.400359582430682 0.5760111 0.17724574 prediction 0.521095611912132 Functional Loss - ITGAV ENSG00000138448 CDS Human protein_coding chr2:187541954 chr2:187541957 stopgain 0.999 1 24 hm5C_associated_SNPs_62129 0 0 1 0 1 ITGAV chr2:187541924 3'AG 187541924 Downstream 34bp
chr5 3600760 3600760 1 + G T LUAD 3600758 + 3600738 3600778 41 CCAGGCCAGATTCGCCGGCACAGCAGTTAAAGTCGCCCTTC CCAGGCCAGATTCGCCGGCACATCAGTTAAAGTCGCCCTTC < 41bp 0.871185378781579 0.610645949693981 0.12797916 0.16178915 prediction 0.521078858175196 Functional Loss - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3600758 chr5:3600760 nonsynonymous SNV 0.977 1 23 hm5C_associated_SNPs_62133 0 0 0 0 2 IRX1 chr5:3600723 3'AG 3600723 Downstream 38bp
chr5 3600760 3600760 1 + G T LUAD 3600758 + 3600738 3600778 41 CCAGGCCAGATTCGCCGGCACAGCAGTTAAAGTCGCCCTTC CCAGGCCAGATTCGCCGGCACATCAGTTAAAGTCGCCCTTC < 41bp 0.871185378781579 0.610645949693981 0.12797916 0.16178915 prediction 0.521078858175196 Functional Loss - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3600758 chr5:3600760 nonsynonymous SNV 0.977 1 23 hm5C_associated_SNPs_62133 0 0 0 0 2 IRX1 chr5:3600795 5'GT 3600795 Upstream 36bp
chr11 60640684 60640684 1 + G T UCEC 60640681 + 60640661 60640701 41 CCAGTGACTTCCTGCCCATTCAGGCATCCATTTTCCCACCC CCAGTGACTTCCTGCCCATTCAGTCATCCATTTTCCCACCC < 41bp 0.760517585483448 0.351408059004692 0.35771453 0.09013283 prediction 0.521035170966897 Functional Loss - ZP1 ENSG00000149506 CDS Human protein_coding chr11:60640681 chr11:60640684 nonsynonymous SNV 0.004 2 24 hm5C_associated_SNPs_62136 0 0 0 0 2 ZP1 chr11:60640635 3'AG 60640635 Downstream 50bp
chr11 60640684 60640684 1 + G T UCEC 60640681 + 60640661 60640701 41 CCAGTGACTTCCTGCCCATTCAGGCATCCATTTTCCCACCC CCAGTGACTTCCTGCCCATTCAGTCATCCATTTTCCCACCC < 41bp 0.760517585483448 0.351408059004692 0.35771453 0.09013283 prediction 0.521035170966897 Functional Loss - ZP1 ENSG00000149506 CDS Human protein_coding chr11:60640681 chr11:60640684 nonsynonymous SNV 0.004 2 24 hm5C_associated_SNPs_62136 0 0 0 0 2 ZP1 chr11:60640762 5'GT 60640762 Upstream 79bp
chr11 62433930 62433930 1 + C T rs547965574 62433928 + 62433908 62433948 41 GGATCGGCTGCATGCCCAGCCTCGTTTGGGCACTGTCCCCA GGATCGGCTGCATGCCCAGCCTTGTTTGGGCACTGTCCCCA < 41bp 0.76834372952612 0.507829060534775 0.010422498 0.022162199 prediction 0.521029337982689 Functional Loss - METTL12 ENSG00000214756 CDS Human protein_coding chr11:62433928 chr11:62433930 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_62137 0 0 0 0 1 METTL12 chr11:62433868 3'AG 62433868 Downstream 63bp
chr7 112090830 112090830 1 + G C LUAD 112090829 + 112090809 112090849 41 AGCAGCCGCAGCGACGGCGGCGACAGCAGGTAAGGGGTATC AGCAGCCGCAGCGACGGCGGCCACAGCAGGTAAGGGGTATC < 41bp 0.760514356466127 0.469719572218714 0.87210464 0.805723 prediction 0.521028712932253 Functional Loss - IFRD1 ENSG00000006652 CDS Human protein_coding chr7:112090829 chr7:112090830 synonymous SNV . 0 22 hm5C_associated_SNPs_62138 0 0 1 0 1 IFRD1 chr7:112090837 5'GT 112090837 Upstream 8bp
chr9 95841858 95841858 1 + G T rs41313323 95841856 + 95841836 95841876 41 AACCCGTGAGCGGGCCCAGCCAGGCGCACGACAACCACAGC AACCCGTGAGCGGGCCCAGCCATGCGCACGACAACCACAGC < 41bp 0.760513603585174 0.39772465920968 0.87643254 0.09004602 prediction 0.521027207170348 Functional Loss - SUSD3 ENSG00000157303 CDS Human protein_coding chr9:95841856 chr9:95841858 nonsynonymous SNV 0.458 2 23 hm5C_associated_SNPs_62139 0 0 0 0 1 SUSD3 chr9:95841884 5'GT 95841884 Upstream 27bp
chr6 7402922 7402922 1 + G T SARC 7402920 + 7402900 7402940 41 CTATTTTGGTGTTCAAAGATCGGGATAAATATGTAAGTGGA CTATTTTGGTGTTCAAAGATCGTGATAAATATGTAAGTGGA < 41bp 0.851585618879035 0.591079296142516 0.8816389 0.35057497 prediction 0.521012645473037 Functional Loss - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7402920 chr6:7402922 synonymous SNV . 0 23 hm5C_associated_SNPs_62141 0 0 0 0 2 RIOK1 chr6:7402836 3'AG 7402836 Downstream 87bp
chr6 7402922 7402922 1 + G T SARC 7402920 + 7402900 7402940 41 CTATTTTGGTGTTCAAAGATCGGGATAAATATGTAAGTGGA CTATTTTGGTGTTCAAAGATCGTGATAAATATGTAAGTGGA < 41bp 0.851585618879035 0.591079296142516 0.8816389 0.35057497 prediction 0.521012645473037 Functional Loss - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7402920 chr6:7402922 synonymous SNV . 0 23 hm5C_associated_SNPs_62141 0 0 0 0 2 RIOK1 chr6:7402948 5'GT 7402948 Upstream 27bp
chr6 153077379 153077379 1 + C T SKCM 153077377 + 153077357 153077397 41 GCTGTAAAGAAATATTTGAACTCAATTCTGAATGGAAAGAG GCTGTAAAGAAATATTTGAACTTAATTCTGAATGGAAAGAG < 41bp 0.785387497365838 0.524882130797787 0.082775354 0.07100502 prediction 0.521010733136103 Functional Loss - VIP ENSG00000146469 CDS Human protein_coding chr6:153077377 chr6:153077379 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_62142 0 0 0 0 1 VIP chr6:153077400 5'GT 153077400 Upstream 22bp
chr1 231339757 231339757 1 + G C LUAD 231339756 + 231339736 231339776 41 ACGGTGCCGGGGGACAGTTCCGGGTGAGGCCTTGCTGCTTA ACGGTGCCGGGGGACAGTTCCCGGTGAGGCCTTGCTGCTTA < 41bp 0.849504704054453 0.58902183279668 0.9322313 0.47619173 prediction 0.520965742515547 Functional Loss - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231339756 chr1:231339757 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_62145 0 0 0 0 1 TRIM67 chr1:231339758 5'GT 231339758 Upstream 2bp
chr20 21349172 21349172 1 + G C SKCM 21349168 + 21349148 21349188 41 CACCACCACCTGTGACTTACCAGGGAAACTTATACAGGCCG CACCACCACCTGTGACTTACCAGGCAAACTTATACAGGCCG < 41bp 0.803182904945079 0.542701761225437 0.9500103 0.6478064 prediction 0.520962287439284 Functional Loss - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21349168 chr20:21349172 nonsynonymous SNV 0.657 1 25 hm5C_associated_SNPs_62147 0 0 1 0 2 XRN2 chr20:21349101 3'AG 21349101 Downstream 72bp
chr20 21349172 21349172 1 + G C SKCM 21349168 + 21349148 21349188 41 CACCACCACCTGTGACTTACCAGGGAAACTTATACAGGCCG CACCACCACCTGTGACTTACCAGGCAAACTTATACAGGCCG < 41bp 0.803182904945079 0.542701761225437 0.9500103 0.6478064 prediction 0.520962287439284 Functional Loss - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21349168 chr20:21349172 nonsynonymous SNV 0.657 1 25 hm5C_associated_SNPs_62147 0 0 1 0 2 XRN2 chr20:21349228 5'GT 21349228 Upstream 57bp
chr13 53227190 53227190 1 + G T GBM 53227188 + 53227168 53227208 41 GTTTTCCTGACAGGTTTTTCCAGAGCTTCTCGGATGCCCTA GTTTTCCTGACAGGTTTTTCCATAGCTTCTCGGATGCCCTA < 41bp 0.864937333781829 0.604467975925091 0.8895314 0.35620165 prediction 0.520938715713475 Functional Loss - SUGT1 ENSG00000165416 CDS Human protein_coding chr13:53227188 chr13:53227190 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_62150 0 0 1 0 2 SUGT1 chr13:53227181 3'AG 53227181 Downstream 10bp
chr13 53227190 53227190 1 + G T GBM 53227188 + 53227168 53227208 41 GTTTTCCTGACAGGTTTTTCCAGAGCTTCTCGGATGCCCTA GTTTTCCTGACAGGTTTTTCCATAGCTTCTCGGATGCCCTA < 41bp 0.864937333781829 0.604467975925091 0.8895314 0.35620165 prediction 0.520938715713475 Functional Loss - SUGT1 ENSG00000165416 CDS Human protein_coding chr13:53227188 chr13:53227190 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_62150 0 0 1 0 2 SUGT1 chr13:53227238 5'GT 53227238 Upstream 49bp
chr12 81472119 81472119 1 + G T HNSC 81472116 + 81472096 81472136 41 TCGCAGCCTCGGTGACCGACCCCGAGAGGTTCTGGGGCAAA TCGCAGCCTCGGTGACCGACCCCTAGAGGTTCTGGGGCAAA < 41bp 0.760468406629314 0.380038755901439 0.2775825 0.05231139 prediction 0.520936813258629 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81472116 chr12:81472119 stopgain 0.925 1 24 hm5C_associated_SNPs_62151 0 0 1 0 2 ACSS3 chr12:81472207 5'GT 81472207 Upstream 89bp
chr12 81472119 81472119 1 + G T HNSC 81472116 + 81472096 81472136 41 TCGCAGCCTCGGTGACCGACCCCGAGAGGTTCTGGGGCAAA TCGCAGCCTCGGTGACCGACCCCTAGAGGTTCTGGGGCAAA < 41bp 0.760468406629314 0.380038755901439 0.2775825 0.05231139 prediction 0.520936813258629 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81472116 chr12:81472119 stopgain 0.925 1 24 hm5C_associated_SNPs_62151 0 0 1 0 2 ACSS3 chr12:81472210 5'GT 81472210 Upstream 92bp
chr2 27157527 27157527 1 + C T SKCM 27157525 + 27157505 27157545 41 TACCACCAGGACTGGTCCCACGCGGCTGCCTATGTCACGGT TACCACCAGGACTGGTCCCACGTGGCTGCCTATGTCACGGT < 41bp 0.771663410420203 0.511207439129106 0.6255429 0.5558617 prediction 0.520911942582194 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157525 chr2:27157527 nonsynonymous SNV 0.682 5 23 hm5C_associated_SNPs_62155 0 0 0 0 2 DPYSL5 chr2:27157446 3'AG 27157446 Downstream 82bp
chr2 27157527 27157527 1 + C T SKCM 27157525 + 27157505 27157545 41 TACCACCAGGACTGGTCCCACGCGGCTGCCTATGTCACGGT TACCACCAGGACTGGTCCCACGTGGCTGCCTATGTCACGGT < 41bp 0.771663410420203 0.511207439129106 0.6255429 0.5558617 prediction 0.520911942582194 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157525 chr2:27157527 nonsynonymous SNV 0.682 5 23 hm5C_associated_SNPs_62155 0 0 0 0 2 DPYSL5 chr2:27157602 5'GT 27157602 Upstream 76bp
chr14 95108162 95108162 1 + G T STAD 95108159 + 95108139 95108179 41 AATATACAGAGCAGCAGACCCAGGGGAAGCTCGGGGCCTGG AATATACAGAGCAGCAGACCCAGTGGAAGCTCGGGGCCTGG < 41bp 0.899828194390354 0.63938048778745 0.9107927 0.88856864 prediction 0.520895413205807 Functional Loss - SERPINA13P ENSG00000187483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr14:95108159 chr14:95108162 . . 0 24 hm5C_associated_SNPs_62157 0 0 0 0 1 SERPINA13P chr14:95108237 5'GT 95108237 Upstream 76bp
chr6 31783376 31783376 1 - C A rs33934112 31783378 - 31783358 31783398 41 TCTGGGAAGCCTTGGGACAACGGGAGTCACTCTCGAAAAAG TCTGGGAAGCCTTGGGACAACGTGAGTCACTCTCGAAAAAG < 41bp 0.833664453329971 0.573227533124967 0.8955415 0.6569178 prediction 0.520873840410007 Functional Loss - HSPA1A ENSG00000204389;ENSG00000204390 UTR5 Human other chr6:31783378 chr6:31783376 . . 0 23 hm5C_associated_SNPs_62159 0 0 0 0 1 HSPA1A chr6:31783358 5'GT 31783358 Upstream 19bp
chr14 56645145 56645145 1 + G T ESCA 56645143 + 56645123 56645163 41 AAGGCAAATGGTGTCAAACCCAGCACCGTCCATGTGATATC AAGGCAAATGGTGTCAAACCCATCACCGTCCATGTGATATC < 41bp 0.760424491431685 0.421082349858537 0.19760889 0.057254106 prediction 0.520848982863369 Functional Loss - PELI2 ENSG00000139946 CDS Human protein_coding chr14:56645143 chr14:56645145 nonsynonymous SNV 0.943 2 23 hm5C_associated_SNPs_62160 0 0 1 0 2 PELI2 chr14:56645053 3'AG 56645053 Downstream 93bp
chr14 56645145 56645145 1 + G T ESCA 56645143 + 56645123 56645163 41 AAGGCAAATGGTGTCAAACCCAGCACCGTCCATGTGATATC AAGGCAAATGGTGTCAAACCCATCACCGTCCATGTGATATC < 41bp 0.760424491431685 0.421082349858537 0.19760889 0.057254106 prediction 0.520848982863369 Functional Loss - PELI2 ENSG00000139946 CDS Human protein_coding chr14:56645143 chr14:56645145 nonsynonymous SNV 0.943 2 23 hm5C_associated_SNPs_62160 0 0 1 0 2 PELI2 chr14:56645182 5'GT 56645182 Upstream 38bp
chr15 75189921 75189921 1 + G T UCEC 75189919 + 75189899 75189939 41 CCAGCATCCTCCTGATGGTACAGGGGACAGTAATAGCCAGC CCAGCATCCTCCTGATGGTACATGGGACAGTAATAGCCAGC < 41bp 0.760413518833215 0.417385542023998 0.56045157 0.12461129 prediction 0.52082703766643 Functional Loss - MPI ENSG00000178802 CDS Human protein_coding chr15:75189919 chr15:75189921 nonsynonymous SNV 0.516 1 23 hm5C_associated_SNPs_62162 0 0 1 2 1 MPI chr15:75189853 3'AG 75189853 Downstream 69bp
chr1 112533767 112533767 1 + G T UCEC 112533765 + 112533745 112533785 41 GCTCCGTGCCCCAGCAGGGACGGGGAACGCTTGGCTTGAGA GCTCCGTGCCCCAGCAGGGACGTGGAACGCTTGGCTTGAGA < 41bp 0.86914203450554 0.608741252049171 0.9042785 0.6784452 prediction 0.520801564912738 Functional Loss - LINC01750 ENSG00000231437 ncRNA_exonic Human lincRNA chr1:112533765 chr1:112533767 . . 0 23 hm5C_associated_SNPs_62164 0 0 0 0 1 LINC01750 chr1:112533809 5'GT 112533809 Upstream 43bp
chr12 102056286 102056286 1 + C T UCEC 102056284 + 102056264 102056304 41 GCAGTCAATGCCATTGGCATCTCCAAGCCCAGTATGCCCTC GCAGTCAATGCCATTGGCATCTTCAAGCCCAGTATGCCCTC < 41bp 0.807639276009099 0.547240885956222 0.96946216 0.46744016 prediction 0.520796780105753 Functional Loss - MYBPC1 ENSG00000196091 CDS Human protein_coding chr12:102056284 chr12:102056286 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_62166 0 0 0 0 1 MYBPC1 chr12:102056324 5'GT 102056324 Upstream 39bp
chr6 168440828 168440828 1 + C T HNSC 168440826 + 168440806 168440846 41 AAGCACCCCACCCTGGTGCACGCGGATTCCTCCAGGTCTCA AAGCACCCCACCCTGGTGCACGTGGATTCCTCCAGGTCTCA < 41bp 0.765462661276094 0.505065126230491 0.36767268 0.28773415 prediction 0.520795070091207 Functional Loss - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168440826 chr6:168440828 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_62167 0 0 0 0 2 KIF25 chr6:168440745 3'AG 168440745 Downstream 84bp
chr6 168440828 168440828 1 + C T HNSC 168440826 + 168440806 168440846 41 AAGCACCCCACCCTGGTGCACGCGGATTCCTCCAGGTCTCA AAGCACCCCACCCTGGTGCACGTGGATTCCTCCAGGTCTCA < 41bp 0.765462661276094 0.505065126230491 0.36767268 0.28773415 prediction 0.520795070091207 Functional Loss - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168440826 chr6:168440828 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_62167 0 0 0 0 2 KIF25 chr6:168440896 5'GT 168440896 Upstream 69bp
chr13 25265129 25265129 1 + C T SKCM 25265127 + 25265107 25265147 41 ACTTCCCCTGTAGGCACTGTCACCGGCATGGTTATCAACAC ACTTCCCCTGTAGGCACTGTCATCGGCATGGTTATCAACAC < 41bp 0.770787573161643 0.510399505899041 0.24789727 0.27910495 prediction 0.520776134525203 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25265127 chr13:25265129 nonsynonymous SNV 0.697 3 23 hm5C_associated_SNPs_62169 0 0 0 0 2 ATP12A chr13:25265102 3'AG 25265102 Downstream 28bp
chr13 25265129 25265129 1 + C T SKCM 25265127 + 25265107 25265147 41 ACTTCCCCTGTAGGCACTGTCACCGGCATGGTTATCAACAC ACTTCCCCTGTAGGCACTGTCATCGGCATGGTTATCAACAC < 41bp 0.770787573161643 0.510399505899041 0.24789727 0.27910495 prediction 0.520776134525203 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25265127 chr13:25265129 nonsynonymous SNV 0.697 3 23 hm5C_associated_SNPs_62169 0 0 0 0 2 ATP12A chr13:25265120 3'AG 25265120 Downstream 10bp
chr6 43271910 43271910 1 + G T rs70953693 43271908 + 43271888 43271928 41 GGGATCGCCCTGCTGGCTGCCGGCACCGCCCTCCTGCTGCC GGGATCGCCCTGCTGGCTGCCGTCACCGCCCTCCTGCTGCC < 41bp 0.88708116760338 0.62669933046122 0.326792 0.041041017 prediction 0.52076367428432 Functional Loss - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43271908 chr6:43271910 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_62173 0 0 1 0 1 SLC22A7 chr6:43271982 5'GT 43271982 Upstream 73bp
chr19 52817523 52817523 1 + G T THCA 52817520 + 52817500 52817540 41 TGTTGGAGAACTACAGGAACCTGGTCTCCCTGGGTGAGGAT TGTTGGAGAACTACAGGAACCTGTTCTCCCTGGGTGAGGAT < 41bp 0.760373372046963 0.385687389744362 0.68302727 0.21547028 prediction 0.520746744093926 Functional Loss - ZNF480 ENSG00000198464 CDS Human protein_coding chr19:52817520 chr19:52817523 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_62176 0 0 1 0 1 ZNF480 chr19:52817532 5'GT 52817532 Upstream 10bp
chr1 27121660 27121660 1 + G T BLCA 27121657 + 27121637 27121677 41 ATCTTGGATTCCTCAGTCCTCAGGTGTTTGTGTACGTGGTC ATCTTGGATTCCTCAGTCCTCAGTTGTTTGTGTACGTGGTC < 41bp 0.760368110249815 0.366545382167517 0.85113555 0.18595776 prediction 0.52073622049963 Functional Loss - PIGV ENSG00000060642 CDS Human protein_coding chr1:27121657 chr1:27121660 nonsynonymous SNV 0.976 3 24 hm5C_associated_SNPs_62177 0 0 1 0 1 PIGV chr1:27121725 5'GT 27121725 Upstream 66bp
chr12 122439464 122439464 1 + C T STAD 122439462 + 122439442 122439482 41 CTTCACTGTTTGGCCTGAATCCCGAGGGATGGAAATCCGAG CTTCACTGTTTGGCCTGAATCCTGAGGGATGGAAATCCGAG < 41bp 0.760351579075464 0.474091036925225 0.4668659 0.50108767 prediction 0.520703158150928 Functional Loss - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122439462 chr12:122439464 synonymous SNV . 0 23 hm5C_associated_SNPs_62180 0 0 0 0 2 WDR66 chr12:122439403 3'AG 122439403 Downstream 62bp
chr12 122439464 122439464 1 + C T STAD 122439462 + 122439442 122439482 41 CTTCACTGTTTGGCCTGAATCCCGAGGGATGGAAATCCGAG CTTCACTGTTTGGCCTGAATCCTGAGGGATGGAAATCCGAG < 41bp 0.760351579075464 0.474091036925225 0.4668659 0.50108767 prediction 0.520703158150928 Functional Loss - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122439462 chr12:122439464 synonymous SNV . 0 23 hm5C_associated_SNPs_62180 0 0 0 0 2 WDR66 chr12:122439504 5'GT 122439504 Upstream 41bp
chr16 57732894 57732894 1 + C T rs138069429 57732892 + 57732872 57732912 41 ACAGCCATCTGTGCCCGGACCGCGTGCCCCTCTTCCTGCAC ACAGCCATCTGTGCCCGGACCGTGTGCCCCTCTTCCTGCAC < 41bp 0.761196797818167 0.500847870652596 0.29386672 0.2742378 prediction 0.520697854331142 Functional Loss - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57732892 chr16:57732894 synonymous SNV . 0 23 hm5C_associated_SNPs_62181 0 0 0 0 1 DRC7 chr16:57732936 5'GT 57732936 Upstream 43bp
chr3 11070502 11070502 1 + C T SKCM 11070500 + 11070480 11070520 41 CTCTGGGCCATCCTCTTCTTCTCCATGCTGTTGATGCTGGG CTCTGGGCCATCCTCTTCTTCTTCATGCTGTTGATGCTGGG < 41bp 0.760346971016505 0.460604534797637 0.956553 0.04750493 prediction 0.520693942033009 Functional Loss - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11070500 chr3:11070502 nonsynonymous SNV 0.980 3 23 hm5C_associated_SNPs_62183 0 0 0 0 2 SLC6A1 chr3:11070421 3'AG 11070421 Downstream 82bp
chr3 11070502 11070502 1 + C T SKCM 11070500 + 11070480 11070520 41 CTCTGGGCCATCCTCTTCTTCTCCATGCTGTTGATGCTGGG CTCTGGGCCATCCTCTTCTTCTTCATGCTGTTGATGCTGGG < 41bp 0.760346971016505 0.460604534797637 0.956553 0.04750493 prediction 0.520693942033009 Functional Loss - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11070500 chr3:11070502 nonsynonymous SNV 0.980 3 23 hm5C_associated_SNPs_62183 0 0 0 0 2 SLC6A1 chr3:11070533 5'GT 11070533 Upstream 32bp
chr17 79213403 79213403 1 + G T rs374420845 79213400 + 79213380 79213420 41 GGCAGGTGCGTGCAGGCCTCCACGGCCCCGGGCGGCCGCCT GGCAGGTGCGTGCAGGCCTCCACTGCCCCGGGCGGCCGCCT < 41bp 0.907843155882752 0.647497956331391 0.4343689 0.32797873 prediction 0.520690399102723 Functional Loss - NDUFAF8 ENSG00000224877 CDS Human protein_coding chr17:79213400 chr17:79213403 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_62184 0 0 1 0 3 NDUFAF8 chr17:79213368 3'AG 79213368 Downstream 36bp
chr17 79213403 79213403 1 + G T rs374420845 79213400 + 79213380 79213420 41 GGCAGGTGCGTGCAGGCCTCCACGGCCCCGGGCGGCCGCCT GGCAGGTGCGTGCAGGCCTCCACTGCCCCGGGCGGCCGCCT < 41bp 0.907843155882752 0.647497956331391 0.4343689 0.32797873 prediction 0.520690399102723 Functional Loss - NDUFAF8 ENSG00000224877 CDS Human protein_coding chr17:79213400 chr17:79213403 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_62184 0 0 1 0 3 NDUFAF8 chr17:79213395 3'AG 79213395 Downstream 9bp
chr17 79213403 79213403 1 + G T rs374420845 79213400 + 79213380 79213420 41 GGCAGGTGCGTGCAGGCCTCCACGGCCCCGGGCGGCCGCCT GGCAGGTGCGTGCAGGCCTCCACTGCCCCGGGCGGCCGCCT < 41bp 0.907843155882752 0.647497956331391 0.4343689 0.32797873 prediction 0.520690399102723 Functional Loss - NDUFAF8 ENSG00000224877 CDS Human protein_coding chr17:79213400 chr17:79213403 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_62184 0 0 1 0 3 NDUFAF8 chr17:79213478 5'GT 79213478 Upstream 76bp
chr17 4700737 4700737 1 + T C HNSC 4700736 + 4700716 4700756 41 ATTCTGCCATCCTGCAGGTCCTACATCGCCAATCGAGTGAC ATTCTGCCATCCTGCAGGTCCCACATCGCCAATCGAGTGAC < 41bp 0.761362231880611 0.501021174440688 0.20506456 0.0029869378 prediction 0.520682114879845 Functional Loss - PSMB6 ENSG00000142507 CDS Human protein_coding chr17:4700736 chr17:4700737 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_62185 0 0 1 0 1 PSMB6 chr17:4700733 3'AG 4700733 Downstream 5bp
chr19 20215090 20215090 1 + G T BLCA 20215087 + 20215067 20215107 41 ATGTGGCCATAGAATTCTCTCTGGAGGAGTGGCATTGCCTG ATGTGGCCATAGAATTCTCTCTGTAGGAGTGGCATTGCCTG < 41bp 0.90021989898704 0.639894885174164 0.09956336 0.025786042 prediction 0.520650027625752 Functional Loss - ZNF90 ENSG00000213988 CDS Human protein_coding chr19:20215087 chr19:20215090 stopgain 0.155 0 24 hm5C_associated_SNPs_62188 0 0 0 0 2 ZNF90 chr19:20215048 3'AG 20215048 Downstream 43bp
chr19 20215090 20215090 1 + G T BLCA 20215087 + 20215067 20215107 41 ATGTGGCCATAGAATTCTCTCTGGAGGAGTGGCATTGCCTG ATGTGGCCATAGAATTCTCTCTGTAGGAGTGGCATTGCCTG < 41bp 0.90021989898704 0.639894885174164 0.09956336 0.025786042 prediction 0.520650027625752 Functional Loss - ZNF90 ENSG00000213988 CDS Human protein_coding chr19:20215087 chr19:20215090 stopgain 0.155 0 24 hm5C_associated_SNPs_62188 0 0 0 0 2 ZNF90 chr19:20215174 5'GT 20215174 Upstream 85bp
chr1 228005158 228005158 1 + G T UCEC 228005155 + 228005135 228005175 41 CAGTGCCAATTGCTGGGCTACGGGATGGGGACTAGTCTCAA CAGTGCCAATTGCTGGGCTACGGTATGGGGACTAGTCTCAA < 41bp 0.905913302188984 0.645602611418637 0.89714074 0.23082045 prediction 0.520621381540693 Functional Loss - PRSS38 ENSG00000185888 CDS Human protein_coding chr1:228005155 chr1:228005158 nonsynonymous SNV 0.462 5 24 hm5C_associated_SNPs_62191 0 0 0 0 1 PRSS38 chr1:228005181 5'GT 228005181 Upstream 24bp
chr13 113783854 113783854 1 + C T BLCA 113783852 + 113783832 113783872 41 AAGAGATGAAGAAAGGACACCTCGAAAGAGAGTGCATGGAA AAGAGATGAAGAAAGGACACCTTGAAAGAGAGTGCATGGAA < 41bp 0.817368281824668 0.557057913902438 0.2649337 0.011082411 prediction 0.520620735844459 Functional Loss - F10 ENSG00000126218 CDS Human protein_coding chr13:113783852 chr13:113783854 synonymous SNV . 0 23 hm5C_associated_SNPs_62192 0 0 1 0 1 F10 chr13:113783926 5'GT 113783926 Upstream 73bp
chr16 1291238 1291238 1 + G C BLCA 1291234 + 1291214 1291254 41 AGTGGCCCTGGCAGGTGAGCCTGAGAGTCCACGGCCCATAC AGTGGCCCTGGCAGGTGAGCCTGACAGTCCACGGCCCATAC < 41bp 0.830765327614986 0.570455528118396 0.894702 0.4123133 prediction 0.52061959899318 Functional Loss - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291234 chr16:1291238 nonsynonymous SNV 0.599 5 25 hm5C_associated_SNPs_62193 0 0 0 0 1 TPSAB1 chr16:1291325 5'GT 1291325 Upstream 88bp
chr1 26527385 26527385 1 + C T SKCM 26527383 + 26527363 26527403 41 GTGCATTGTGTGGTCGCCCGCTCGGAGAAATCTGGTCTCCT GTGCATTGTGTGGTCGCCCGCTTGGAGAAATCTGGTCTCCT < 41bp 0.770004850509319 0.509709507771146 0.25527573 0.11927959 prediction 0.520590685476346 Functional Loss - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26527383 chr1:26527385 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_62195 0 0 0 0 1 CATSPER4 chr1:26527321 3'AG 26527321 Downstream 65bp
chr3 184005662 184005662 1 + C T STAD 184005660 + 184005640 184005680 41 TGGCAGACCTGCATCTCCAACACGGATGACGCCCTTGGCTT TGGCAGACCTGCATCTCCAACATGGATGACGCCCTTGGCTT < 41bp 0.760292030670682 0.495119246141811 0.9354044 0.9457158 prediction 0.520584061341363 Functional Loss - ECE2 ENSG00000145194 CDS Human protein_coding chr3:184005660 chr3:184005662 nonsynonymous SNV 0.956 4 23 hm5C_associated_SNPs_62196 0 0 0 0 2 ECE2 chr3:184005625 3'AG 184005625 Downstream 38bp
chr3 184005662 184005662 1 + C T STAD 184005660 + 184005640 184005680 41 TGGCAGACCTGCATCTCCAACACGGATGACGCCCTTGGCTT TGGCAGACCTGCATCTCCAACATGGATGACGCCCTTGGCTT < 41bp 0.760292030670682 0.495119246141811 0.9354044 0.9457158 prediction 0.520584061341363 Functional Loss - ECE2 ENSG00000145194 CDS Human protein_coding chr3:184005660 chr3:184005662 nonsynonymous SNV 0.956 4 23 hm5C_associated_SNPs_62196 0 0 0 0 2 ECE2 chr3:184005735 5'GT 184005735 Upstream 74bp
chr10 75529721 75529721 1 + C T rs76327331 75529719 + 75529699 75529739 41 TATGTCCGACAGCTAGTTACCTCCATGGATGTGACTGAGAC TATGTCCGACAGCTAGTTACCTTCATGGATGTGACTGAGAC < 41bp 0.837313365508364 0.577032041031651 0.96357965 0.12602353 prediction 0.520562648953426 Functional Loss - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529719 chr10:75529721 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_62200 0 0 1 0 1 SEC24C chr10:75529773 5'GT 75529773 Upstream 53bp
chr4 170634271 170634271 1 + C T UCEC 170634269 + 170634249 170634289 41 AGAAGGTATCGTTGGCAGTTCTCGGGTGTGTTTTGCACAGC AGAAGGTATCGTTGGCAGTTCTTGGGTGTGTTTTGCACAGC < 41bp 0.802344184150058 0.542075724754436 0.19273698 0.19214326 prediction 0.520536918791243 Functional Loss - CLCN3 ENSG00000109572 CDS Human protein_coding chr4:170634269 chr4:170634271 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_62202 0 0 1 0 1 CLCN3 chr4:170634230 3'AG 170634230 Downstream 42bp
chr22 38046671 38046671 1 - C A CESC 38046674 - 38046654 38046694 41 AGCTGGAGCTGGAGCCGGAGCCGGAGCCGGGGTGGTGGCTG AGCTGGAGCTGGAGCCGGAGCCGTAGCCGGGGTGGTGGCTG < 41bp 0.904844503374521 0.644586274889766 0.9192674 0.9097402 prediction 0.52051645696951 Functional Loss - SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38046674 chr22:38046671 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_62203 0 0 0 0 1 SH3BP1 chr22:38046719 3'AG 38046719 Downstream 49bp
chr4 71255442 71255442 1 + A C LUAD 71255438 + 71255418 71255458 41 ACCTGGACCGCTGGCTCCTCCTCAACCTTTTGGCCCAGGAT ACCTGGACCGCTGGCTCCTCCTCACCCTTTTGGCCCAGGAT < 41bp 0.760257969790787 0.349503359545509 0.053726614 0.034159064 prediction 0.520515939581574 Functional Loss - SMR3B ENSG00000171201 CDS Human protein_coding chr4:71255438 chr4:71255442 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_62204 0 0 0 0 1 SMR3B chr4:71255380 3'AG 71255380 Downstream 63bp
chr8 86041560 86041560 1 + C T UCEC 86041558 + 86041538 86041578 41 ACCTTAAACACTTAAGAACCCTCGAAAAAACATTAGAAAAA ACCTTAAACACTTAAGAACCCTTGAAAAAACATTAGAAAAA < 41bp 0.760257546634977 0.478974547768894 0.18453231 0.025338024 prediction 0.520515093269955 Functional Loss - LRRCC1 ENSG00000133739 CDS Human protein_coding chr8:86041558 chr8:86041560 synonymous SNV . 0 23 hm5C_associated_SNPs_62205 0 0 1 0 1 LRRCC1 chr8:86041614 5'GT 86041614 Upstream 55bp
chr15 52074960 52074960 1 + G T UCEC 52074957 + 52074937 52074977 41 TGAGGGAATTTGCAAAGGCTCTGGAGACCAACACTCACGTG TGAGGGAATTTGCAAAGGCTCTGTAGACCAACACTCACGTG < 41bp 0.90643618291746 0.646183164441852 0.22936004 0.065591425 prediction 0.520506036951216 Functional Loss - TMOD2 ENSG00000128872 CDS Human protein_coding chr15:52074957 chr15:52074960 stopgain 0.995 1 24 hm5C_associated_SNPs_62207 0 0 1 0 2 TMOD2 chr15:52074918 3'AG 52074918 Downstream 43bp
chr15 52074960 52074960 1 + G T UCEC 52074957 + 52074937 52074977 41 TGAGGGAATTTGCAAAGGCTCTGGAGACCAACACTCACGTG TGAGGGAATTTGCAAAGGCTCTGTAGACCAACACTCACGTG < 41bp 0.90643618291746 0.646183164441852 0.22936004 0.065591425 prediction 0.520506036951216 Functional Loss - TMOD2 ENSG00000128872 CDS Human protein_coding chr15:52074957 chr15:52074960 stopgain 0.995 1 24 hm5C_associated_SNPs_62207 0 0 1 0 2 TMOD2 chr15:52075025 5'GT 52075025 Upstream 66bp
chr3 100455521 100455521 1 + C T UCEC 100455519 + 100455499 100455539 41 AGGCGTTCAGCCACAGCAGCCACCATATACAGGAGCTCAGA AGGCGTTCAGCCACAGCAGCCATCATATACAGGAGCTCAGA < 41bp 0.760252684106187 0.471854320382722 0.16195735 0.11819297 prediction 0.520505368212373 Functional Loss - TFG ENSG00000114354 CDS Human protein_coding chr3:100455519 chr3:100455521 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_62208 0 0 1 0 2 TFG chr3:100455548 5'GT 100455548 Upstream 28bp
chr3 100455521 100455521 1 + C T UCEC 100455519 + 100455499 100455539 41 AGGCGTTCAGCCACAGCAGCCACCATATACAGGAGCTCAGA AGGCGTTCAGCCACAGCAGCCATCATATACAGGAGCTCAGA < 41bp 0.760252684106187 0.471854320382722 0.16195735 0.11819297 prediction 0.520505368212373 Functional Loss - TFG ENSG00000114354 CDS Human protein_coding chr3:100455519 chr3:100455521 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_62208 0 0 1 0 2 TFG chr3:100455560 5'GT 100455560 Upstream 40bp
chr7 56020994 56020994 1 + G T UCEC 56020991 + 56020971 56021011 41 TGAGAGTGACCAGGCTTGTTCTGGATCCCTATTTATTAAAG TGAGAGTGACCAGGCTTGTTCTGTATCCCTATTTATTAAAG < 41bp 0.898774675414683 0.638530578457388 0.5275835 0.07258439 prediction 0.52048819391459 Functional Loss - MRPS17 ENSG00000239789;ENSG00000249773 CDS Human other chr7:56020991 chr7:56020994 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_62211 0 0 1 0 1 MRPS17 chr7:56021011 5'GT 56021011 Upstream 18bp
chr19 6820817 6820817 1 + G T UCEC 6820815 + 6820795 6820835 41 CCTTTGACCTCTTCGATGTGCAGGATTTTGGCAAGGTGAGC CCTTTGACCTCTTCGATGTGCATGATTTTGGCAAGGTGAGC < 41bp 0.760235738555792 0.417911955935317 0.19319993 0.06710693 prediction 0.520471477111585 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6820815 chr19:6820817 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_62215 0 0 0 0 1 VAV1 chr19:6820829 5'GT 6820829 Upstream 13bp
chr6 166756575 166756575 1 + G C rs76401108 166756571 + 166756551 166756591 41 CACCTGCCTCAGGATTAAAGCGAGGAGCTGTATTTCAGACC CACCTGCCTCAGGATTAAAGCGAGCAGCTGTATTTCAGACC < 41bp 0.800536709017166 0.540303075464104 0.90920556 0.7974965 prediction 0.520467267106123 Functional Loss - LOC100289495 ENSG00000198818 upstream Human protein_coding chr6:166756571 chr6:166756575 . . 0 25 hm5C_associated_SNPs_62217 0 0 0 0 1 LOC100289495 chr6:166756635 5'GT 166756635 Upstream 61bp
chr9 37692733 37692733 1 + C T SKCM 37692731 + 37692711 37692751 41 CTTCGGCGCTCCCGGGACAGCTCGGCCCGGTAAGCCTCCTG CTTCGGCGCTCCCGGGACAGCTTGGCCCGGTAAGCCTCCTG < 41bp 0.773517051388796 0.513283577243778 0.27350968 0.17699152 prediction 0.520466948290035 Functional Loss - FRMPD1 ENSG00000070601 CDS Human protein_coding chr9:37692731 chr9:37692733 nonsynonymous SNV 0.978 1 23 hm5C_associated_SNPs_62218 0 0 0 0 2 FRMPD1 chr9:37692635 3'AG 37692635 Downstream 99bp
chr9 37692733 37692733 1 + C T SKCM 37692731 + 37692711 37692751 41 CTTCGGCGCTCCCGGGACAGCTCGGCCCGGTAAGCCTCCTG CTTCGGCGCTCCCGGGACAGCTTGGCCCGGTAAGCCTCCTG < 41bp 0.773517051388796 0.513283577243778 0.27350968 0.17699152 prediction 0.520466948290035 Functional Loss - FRMPD1 ENSG00000070601 CDS Human protein_coding chr9:37692731 chr9:37692733 nonsynonymous SNV 0.978 1 23 hm5C_associated_SNPs_62218 0 0 0 0 2 FRMPD1 chr9:37692739 5'GT 37692739 Upstream 7bp
chr1 3396428 3396428 1 + G T UCEC 3396425 + 3396405 3396445 41 TTCTTCGCGAAGCAAGCAGACGAGGTCACACTGCAGCAGGC TTCTTCGCGAAGCAAGCAGACGATGTCACACTGCAGCAGGC < 41bp 0.760227822245402 0.367768351627824 0.55030787 0.09167686 prediction 0.520455644490804 Functional Loss - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3396425 chr1:3396428 nonsynonymous SNV 0.184 4 24 hm5C_associated_SNPs_62222 0 0 1 0 2 ARHGEF16 chr1:3396376 3'AG 3396376 Downstream 53bp
chr1 3396428 3396428 1 + G T UCEC 3396425 + 3396405 3396445 41 TTCTTCGCGAAGCAAGCAGACGAGGTCACACTGCAGCAGGC TTCTTCGCGAAGCAAGCAGACGATGTCACACTGCAGCAGGC < 41bp 0.760227822245402 0.367768351627824 0.55030787 0.09167686 prediction 0.520455644490804 Functional Loss - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3396425 chr1:3396428 nonsynonymous SNV 0.184 4 24 hm5C_associated_SNPs_62222 0 0 1 0 2 ARHGEF16 chr1:3396477 5'GT 3396477 Upstream 50bp
chr2 44016845 44016845 1 + C T LUSC 44016843 + 44016823 44016863 41 GACTTAATCAGCATACCCATCACAGGTGACACCTTACGGTA GACTTAATCAGCATACCCATCATAGGTGACACCTTACGGTA < 41bp 0.775535298476986 0.515310241277424 0.3998677 0.3644116 prediction 0.520450114399123 Functional Loss - DYNC2LI1 ENSG00000138036 CDS Human protein_coding chr2:44016843 chr2:44016845 nonsynonymous SNV 0.958 3 23 hm5C_associated_SNPs_62225 0 0 1 0 2 DYNC2LI1 chr2:44016772 3'AG 44016772 Downstream 74bp
chr2 44016845 44016845 1 + C T LUSC 44016843 + 44016823 44016863 41 GACTTAATCAGCATACCCATCACAGGTGACACCTTACGGTA GACTTAATCAGCATACCCATCATAGGTGACACCTTACGGTA < 41bp 0.775535298476986 0.515310241277424 0.3998677 0.3644116 prediction 0.520450114399123 Functional Loss - DYNC2LI1 ENSG00000138036 CDS Human protein_coding chr2:44016843 chr2:44016845 nonsynonymous SNV 0.958 3 23 hm5C_associated_SNPs_62225 0 0 1 0 2 DYNC2LI1 chr2:44016860 5'GT 44016860 Upstream 16bp
chr15 22969226 22969226 1 + C T GBM 22969224 + 22969204 22969244 41 GCTGCTGAGCCGGTACCTGACGCTGGACGGCTTCGACGCCA GCTGCTGAGCCGGTACCTGACGTTGGACGGCTTCGACGCCA < 41bp 0.77243009114942 0.512209615098177 0.52335435 0.6942339 prediction 0.520440952102485 Functional Loss - CYFIP1 ENSG00000068793 CDS Human other chr15:22969224 chr15:22969226 synonymous SNV . 0 23 hm5C_associated_SNPs_62226 0 0 1 0 1 CYFIP1 chr15:22969163 3'AG 22969163 Downstream 64bp
chr10 75542190 75542190 1 + G C HNSC 75542189 + 75542169 75542209 41 GGGCTTCCTCGATTGTGCCGCGAGGGCTCAGGTGACCGATG GGGCTTCCTCGATTGTGCCGCCAGGGCTCAGGTGACCGATG < 41bp 0.841869649716853 0.581676435730873 0.91940767 0.88854027 prediction 0.52038642797196 Functional Loss - CHCHD1 ENSG00000172586 CDS Human protein_coding chr10:75542189 chr10:75542190 synonymous SNV . 0 22 hm5C_associated_SNPs_62229 0 0 1 0 1 CHCHD1 chr10:75542199 5'GT 75542199 Upstream 10bp
chr11 810306 810306 1 + G T UCEC 810303 + 810283 810323 41 TCCCCCAGCGCCAAGGACATCAAGAAGATCTTGGACAGCGT TCCCCCAGCGCCAAGGACATCAATAAGATCTTGGACAGCGT < 41bp 0.908120698569665 0.647933665969856 0.20550823 0.14202604 prediction 0.520374065199619 Functional Loss - RPLP2 ENSG00000177600 CDS Human protein_coding chr11:810303 chr11:810306 nonsynonymous SNV 0.967 4 24 hm5C_associated_SNPs_62231 0 0 1 0 2 RPLP2 chr11:810234 3'AG 810234 Downstream 73bp
chr11 810306 810306 1 + G T UCEC 810303 + 810283 810323 41 TCCCCCAGCGCCAAGGACATCAAGAAGATCTTGGACAGCGT TCCCCCAGCGCCAAGGACATCAATAAGATCTTGGACAGCGT < 41bp 0.908120698569665 0.647933665969856 0.20550823 0.14202604 prediction 0.520374065199619 Functional Loss - RPLP2 ENSG00000177600 CDS Human protein_coding chr11:810303 chr11:810306 nonsynonymous SNV 0.967 4 24 hm5C_associated_SNPs_62231 0 0 1 0 2 RPLP2 chr11:810357 5'GT 810357 Upstream 52bp
chr2 54844783 54844783 1 + G T LUAD 54844781 + 54844761 54844801 41 ATTCACAATTTCACCACTAGCTGGAGGGACGGCATGGCCTT ATTCACAATTTCACCACTAGCTTGAGGGACGGCATGGCCTT < 41bp 0.76017954964724 0.436520001642869 0.30829826 0.12730396 prediction 0.520359099294481 Functional Loss - SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54844781 chr2:54844783 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_62235 0 0 1 0 2 SPTBN1 chr2:54844745 3'AG 54844745 Downstream 39bp
chr2 54844783 54844783 1 + G T LUAD 54844781 + 54844761 54844801 41 ATTCACAATTTCACCACTAGCTGGAGGGACGGCATGGCCTT ATTCACAATTTCACCACTAGCTTGAGGGACGGCATGGCCTT < 41bp 0.76017954964724 0.436520001642869 0.30829826 0.12730396 prediction 0.520359099294481 Functional Loss - SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54844781 chr2:54844783 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_62235 0 0 1 0 2 SPTBN1 chr2:54844825 5'GT 54844825 Upstream 43bp
chr19 40199934 40199934 1 + G T LUAD 40199931 + 40199911 40199951 41 CTTCAGAGATATCTCCCTGACCAGAGTGCTTATCAGCGATT CTTCAGAGATATCTCCCTGACCATAGTGCTTATCAGCGATT < 41bp 0.760172793219682 0.379120660884176 0.15561014 0.02633521 prediction 0.520345586439365 Functional Loss - LGALS14 ENSG00000006659 CDS Human protein_coding chr19:40199931 chr19:40199934 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_62236 0 0 0 0 1 LGALS14 chr19:40199837 3'AG 40199837 Downstream 98bp
chr7 64649492 64649492 1 + G T UCEC 64649490 + 64649470 64649510 41 ACTTGGACCCTCAGGGAGCCCAGGAGCTGCTGGAATTCACC ACTTGGACCCTCAGGGAGCCCATGAGCTGCTGGAATTCACC < 41bp 0.760168492453152 0.435603009095861 0.89089847 0.22296432 prediction 0.520336984906304 Functional Loss - INTS4P1 ENSG00000164669 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64649490 chr7:64649492 . . 0 23 hm5C_associated_SNPs_62239 0 0 0 0 1 INTS4P1 chr7:64649515 5'GT 64649515 Upstream 24bp
chr19 10220370 10220370 1 + G T LUAD 10220367 + 10220347 10220387 41 ACAACCCCGACTCCCAGGAGCTGGACTTCCGCCACTAGTGA ACAACCCCGACTCCCAGGAGCTGTACTTCCGCCACTAGTGA < 41bp 0.76016043763332 0.359940965858975 0.1857715 0.05353865 prediction 0.52032087526664 Functional Loss - PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10220367 chr19:10220370 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_62240 0 0 1 0 2 PPAN;PPAN-P2RY11 chr19:10220307 3'AG 10220307 Downstream 64bp
chr19 10220370 10220370 1 + G T LUAD 10220367 + 10220347 10220387 41 ACAACCCCGACTCCCAGGAGCTGGACTTCCGCCACTAGTGA ACAACCCCGACTCCCAGGAGCTGTACTTCCGCCACTAGTGA < 41bp 0.76016043763332 0.359940965858975 0.1857715 0.05353865 prediction 0.52032087526664 Functional Loss - PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10220367 chr19:10220370 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_62240 0 0 1 0 2 PPAN;PPAN-P2RY11 chr19:10220383 5'GT 10220383 Upstream 14bp
chr12 2907949 2907949 1 + C T BLCA 2907947 + 2907927 2907967 41 TCATTCGCAGAATACAGACTCGCGGTGAAGGCTATGCTAAG TCATTCGCAGAATACAGACTCGTGGTGAAGGCTATGCTAAG < 41bp 0.769929145412514 0.509768915083457 0.67111963 0.83867395 prediction 0.520320460658113 Functional Loss - FKBP4 ENSG00000004478 CDS Human protein_coding chr12:2907947 chr12:2907949 synonymous SNV . 0 23 hm5C_associated_SNPs_62241 0 0 1 0 1 FKBP4 chr12:2907872 3'AG 2907872 Downstream 78bp
chr19 50979855 50979855 1 + G C rs371934738 50979854 + 50979834 50979874 41 GCTCCTGCTCTTGCTGATGGCGGTAGCAGCGCCCAGTCGAG GCTCCTGCTCTTGCTGATGGCCGTAGCAGCGCCCAGTCGAG < 41bp 0.773675443979364 0.513518431823767 0.9008621 0.6107827 prediction 0.520314024311194 Functional Loss - EMC10 ENSG00000161671 CDS Human protein_coding chr19:50979854 chr19:50979855 synonymous SNV . 0 22 hm5C_associated_SNPs_62242 0 0 1 0 1 EMC10 chr19:50979915 5'GT 50979915 Upstream 61bp
chr2 220400033 220400033 1 + G C BLCA 220400032 + 220400012 220400052 41 GCGAGGAAGTACAACCGCAACGAGACCTACATACGGTATGT GCGAGGAAGTACAACCGCAACCAGACCTACATACGGTATGT < 41bp 0.760148999771751 0.460172988870367 0.4501191 0.35125023 prediction 0.520297999543502 Functional Loss - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220400032 chr2:220400033 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_62243 0 0 1 0 1 ASIC4 chr2:220400046 5'GT 220400046 Upstream 14bp
chr8 21890671 21890671 1 + C T LUAD 21890669 + 21890649 21890689 41 GGTAGGAGTGCAGCTTTCTCCCCCAGTTACTTTCCAGCTCC GGTAGGAGTGCAGCTTTCTCCCTCAGTTACTTTCCAGCTCC < 41bp 0.768870584609483 0.508732502695899 0.40990603 0.26503432 prediction 0.520276163827168 Functional Loss - NPM2 ENSG00000158806 CDS Human protein_coding chr8:21890669 chr8:21890671 nonsynonymous SNV 0.977 2 23 hm5C_associated_SNPs_62245 0 0 1 0 2 NPM2 chr8:21890641 3'AG 21890641 Downstream 31bp
chr8 21890671 21890671 1 + C T LUAD 21890669 + 21890649 21890689 41 GGTAGGAGTGCAGCTTTCTCCCCCAGTTACTTTCCAGCTCC GGTAGGAGTGCAGCTTTCTCCCTCAGTTACTTTCCAGCTCC < 41bp 0.768870584609483 0.508732502695899 0.40990603 0.26503432 prediction 0.520276163827168 Functional Loss - NPM2 ENSG00000158806 CDS Human protein_coding chr8:21890669 chr8:21890671 nonsynonymous SNV 0.977 2 23 hm5C_associated_SNPs_62245 0 0 1 0 2 NPM2 chr8:21890734 5'GT 21890734 Upstream 64bp
chr17 72764365 72764365 1 + C T PAAD 72764363 + 72764343 72764383 41 GTGAGATCCGCCTCCAGTGACACCAGCGAGGAGGTAGGCCA GTGAGATCCGCCTCCAGTGACATCAGCGAGGAGGTAGGCCA < 41bp 0.764882069553557 0.504745534116428 0.64640987 0.5872954 prediction 0.52027307087426 Functional Loss - SLC9A3R1 ENSG00000109062 CDS Human protein_coding chr17:72764363 chr17:72764365 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_62246 0 0 1 0 2 SLC9A3R1 chr17:72764286 3'AG 72764286 Downstream 80bp
chr17 72764365 72764365 1 + C T PAAD 72764363 + 72764343 72764383 41 GTGAGATCCGCCTCCAGTGACACCAGCGAGGAGGTAGGCCA GTGAGATCCGCCTCCAGTGACATCAGCGAGGAGGTAGGCCA < 41bp 0.764882069553557 0.504745534116428 0.64640987 0.5872954 prediction 0.52027307087426 Functional Loss - SLC9A3R1 ENSG00000109062 CDS Human protein_coding chr17:72764363 chr17:72764365 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_62246 0 0 1 0 2 SLC9A3R1 chr17:72764375 5'GT 72764375 Upstream 11bp
chr20 19565644 19565644 1 + G C rs547086925 19565640 + 19565620 19565660 41 GCACCTCAGTGAAGATGTGGCTGGGGCCACATTCATGGCAG GCACCTCAGTGAAGATGTGGCTGGCGCCACATTCATGGCAG < 41bp 0.793066928454026 0.532936515345248 0.8844837 0.7205466 prediction 0.520260826217557 Functional Loss - SLC24A3 ENSG00000185052 CDS Human protein_coding chr20:19565640 chr20:19565644 synonymous SNV . 0 25 hm5C_associated_SNPs_62247 0 0 0 0 2 SLC24A3 chr20:19565615 3'AG 19565615 Downstream 30bp
chr20 19565644 19565644 1 + G C rs547086925 19565640 + 19565620 19565660 41 GCACCTCAGTGAAGATGTGGCTGGGGCCACATTCATGGCAG GCACCTCAGTGAAGATGTGGCTGGCGCCACATTCATGGCAG < 41bp 0.793066928454026 0.532936515345248 0.8844837 0.7205466 prediction 0.520260826217557 Functional Loss - SLC24A3 ENSG00000185052 CDS Human protein_coding chr20:19565640 chr20:19565644 synonymous SNV . 0 25 hm5C_associated_SNPs_62247 0 0 0 0 2 SLC24A3 chr20:19565699 5'GT 19565699 Upstream 56bp
chr12 7310217 7310217 1 + C T BLCA 7310215 + 7310195 7310235 41 GCCGGCGGGCCTCCAGGGGCCTCCAGTGACCCCAAGGACCC GCCGGCGGGCCTCCAGGGGCCTTCAGTGACCCCAAGGACCC < 41bp 0.815271521118311 0.555146697987552 0.9523562 0.43748474 prediction 0.52024964626152 Functional Loss - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7310215 chr12:7310217 nonsynonymous SNV 0.796 3 23 hm5C_associated_SNPs_62248 0 0 1 0 1 CLSTN3 chr12:7310287 5'GT 7310287 Upstream 71bp
chr1 113197139 113197139 1 + G T LIHC 113197136 + 113197116 113197156 41 TAATAGCAGATTTTTAGATCCAAGAAACAAAATTTCCTTTA TAATAGCAGATTTTTAGATCCAATAAACAAAATTTCCTTTA < 41bp 0.760123781609946 0.400353898276083 0.27550614 0.38808396 prediction 0.520247563219892 Functional Loss - CAPZA1 ENSG00000116489 CDS Human protein_coding chr1:113197136 chr1:113197139 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_62250 0 0 1 0 1 CAPZA1 chr1:113197087 3'AG 113197087 Downstream 53bp
chr15 81585195 81585195 1 + G T rs200974943 81585193 + 81585173 81585213 41 GCCCACCCCTCCCAGAGAGCCGGGACAGCCACCCGCCGCTG GCCCACCCCTCCCAGAGAGCCGTGACAGCCACCCGCCGCTG < 41bp 0.877948092255362 0.617839595585027 0.93035454 0.6424971 prediction 0.52021699334067 Functional Loss - IL16 ENSG00000172349 CDS Human protein_coding chr15:81585193 chr15:81585195 synonymous SNV . 0 23 hm5C_associated_SNPs_62254 0 0 0 0 1 IL16 chr15:81585240 5'GT 81585240 Upstream 46bp
chr7 143027884 143027884 1 + G T LUAD 143027881 + 143027861 143027901 41 GCAGGAGTGCTATTTAGCATCGAGGTCACCTCCACCTACTT GCAGGAGTGCTATTTAGCATCGATGTCACCTCCACCTACTT < 41bp 0.760107302880804 0.357017027509095 0.92592216 0.038419485 prediction 0.520214605761608 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143027881 chr7:143027884 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_62255 0 0 0 0 1 CLCN1 chr7:143027865 3'AG 143027865 Downstream 20bp
chr16 77245149 77245149 1 + G T UCEC 77245147 + 77245127 77245167 41 AGCTGGAGGATCTGATGGGCCAGCACAAGGACCTCTGGGAA AGCTGGAGGATCTGATGGGCCATCACAAGGACCTCTGGGAA < 41bp 0.760107194671178 0.413889816914203 0.45386815 0.17669317 prediction 0.520214389342355 Functional Loss - SYCE1L ENSG00000205078 CDS Human protein_coding chr16:77245147 chr16:77245149 nonsynonymous SNV 0.810 2 23 hm5C_associated_SNPs_62256 0 0 0 0 2 SYCE1L chr16:77245110 3'AG 77245110 Downstream 40bp
chr16 77245149 77245149 1 + G T UCEC 77245147 + 77245127 77245167 41 AGCTGGAGGATCTGATGGGCCAGCACAAGGACCTCTGGGAA AGCTGGAGGATCTGATGGGCCATCACAAGGACCTCTGGGAA < 41bp 0.760107194671178 0.413889816914203 0.45386815 0.17669317 prediction 0.520214389342355 Functional Loss - SYCE1L ENSG00000205078 CDS Human protein_coding chr16:77245147 chr16:77245149 nonsynonymous SNV 0.810 2 23 hm5C_associated_SNPs_62256 0 0 0 0 2 SYCE1L chr16:77245173 5'GT 77245173 Upstream 25bp
chr5 159476548 159476548 1 + G T UCEC 159476546 + 159476526 159476566 41 CAATTAAACCCCAGCTATATCAGGGCAATATTGAGGAGAGC CAATTAAACCCCAGCTATATCATGGCAATATTGAGGAGAGC < 41bp 0.760101335541583 0.431036067324218 0.92403543 0.82101476 prediction 0.520202671083166 Functional Loss - TTC1 ENSG00000113312 CDS Human protein_coding chr5:159476546 chr5:159476548 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_62257 0 0 1 0 1 TTC1 chr5:159476521 3'AG 159476521 Downstream 28bp
chr9 108127879 108127879 1 + C T UCEC 108127877 + 108127857 108127897 41 TATCACATTAGTCAAAATTCCGCGAATGATCCTTATGTATA TATCACATTAGTCAAAATTCCGTGAATGATCCTTATGTATA < 41bp 0.760097855460094 0.477951208057422 0.12611449 0.0932931 prediction 0.520195710920188 Functional Loss - SLC44A1 ENSG00000070214 CDS Human protein_coding chr9:108127877 chr9:108127879 stopgain 0.964 1 23 hm5C_associated_SNPs_62258 0 0 0 0 1 SLC44A1 chr9:108127920 5'GT 108127920 Upstream 42bp
chr6 130370949 130370949 1 + G T LIHC 130370947 + 130370927 130370967 41 CCCGTATTTCCACCTGCCTACTGGACATCTCCACCTGGATG CCCGTATTTCCACCTGCCTACTTGACATCTCCACCTGGATG < 41bp 0.760096092359935 0.42416877205077 0.0933153 0.025782317 prediction 0.52019218471987 Functional Loss - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130370947 chr6:130370949 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_62259 0 0 0 0 2 L3MBTL3 chr6:130370901 3'AG 130370901 Downstream 49bp
chr6 130370949 130370949 1 + G T LIHC 130370947 + 130370927 130370967 41 CCCGTATTTCCACCTGCCTACTGGACATCTCCACCTGGATG CCCGTATTTCCACCTGCCTACTTGACATCTCCACCTGGATG < 41bp 0.760096092359935 0.42416877205077 0.0933153 0.025782317 prediction 0.52019218471987 Functional Loss - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130370947 chr6:130370949 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_62259 0 0 0 0 2 L3MBTL3 chr6:130370975 5'GT 130370975 Upstream 27bp
chrX 130220617 130220617 1 + T C LIHC 130220616 + 130220596 130220636 41 AGCCCGGGCTGCTGTCCTTGCTCAAAGCAAGCCTTCTGATG AGCCCGGGCTGCTGTCCTTGCCCAAAGCAAGCCTTCTGATG < 41bp 0.765886222493998 0.505816402008447 0.4130956 0.23675475 prediction 0.520139640971101 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220616 chrX:130220617 synonymous SNV . 0 22 hm5C_associated_SNPs_62265 0 0 0 0 2 ARHGAP36 chrX:130220533 3'AG 130220533 Downstream 85bp
chrX 130220617 130220617 1 + T C LIHC 130220616 + 130220596 130220636 41 AGCCCGGGCTGCTGTCCTTGCTCAAAGCAAGCCTTCTGATG AGCCCGGGCTGCTGTCCTTGCCCAAAGCAAGCCTTCTGATG < 41bp 0.765886222493998 0.505816402008447 0.4130956 0.23675475 prediction 0.520139640971101 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220616 chrX:130220617 synonymous SNV . 0 22 hm5C_associated_SNPs_62265 0 0 0 0 2 ARHGAP36 chrX:130220639 5'GT 130220639 Upstream 23bp
chr1 160719844 160719844 1 + A T SKCM 160719840 + 160719820 160719860 41 GTTGCCAGGAACCCTGTCAGCAGAAACTTCTCAAGCCCCAT GTTGCCAGGAACCCTGTCAGCAGATACTTCTCAAGCCCCAT < 41bp 0.834568080061402 0.574509095073256 0.40475133 0.7100119 prediction 0.520117969976292 Functional Loss - SLAMF7 ENSG00000026751 CDS Human protein_coding chr1:160719840 chr1:160719844 nonsynonymous SNV 0.002 3 25 hm5C_associated_SNPs_62266 0 0 0 0 2 SLAMF7 chr1:160719883 5'GT 160719883 Upstream 40bp
chr1 160719844 160719844 1 + A T SKCM 160719840 + 160719820 160719860 41 GTTGCCAGGAACCCTGTCAGCAGAAACTTCTCAAGCCCCAT GTTGCCAGGAACCCTGTCAGCAGATACTTCTCAAGCCCCAT < 41bp 0.834568080061402 0.574509095073256 0.40475133 0.7100119 prediction 0.520117969976292 Functional Loss - SLAMF7 ENSG00000026751 CDS Human protein_coding chr1:160719840 chr1:160719844 nonsynonymous SNV 0.002 3 25 hm5C_associated_SNPs_62266 0 0 0 0 2 SLAMF7 chr1:160719922 5'GT 160719922 Upstream 79bp
chr1 89843714 89843714 1 + G T UCEC 89843712 + 89843692 89843732 41 GCCCTGGCTGTGCTCCTGTGCAGCACCTTTGTCTACAACAG GCCCTGGCTGTGCTCCTGTGCATCACCTTTGTCTACAACAG < 41bp 0.760041434257489 0.424204328296087 0.022532701 0.02206567 prediction 0.520082868514978 Functional Loss - GBP6 ENSG00000183347 CDS Human protein_coding chr1:89843712 chr1:89843714 nonsynonymous SNV 0.984 5 23 hm5C_associated_SNPs_62269 0 0 0 0 1 GBP6 chr1:89843771 5'GT 89843771 Upstream 58bp
chr1 84948636 84948636 1 + G T SARC 84948634 + 84948614 84948654 41 TACCCAAGACCATTGACAACCAGCGAGTGTATGATGAAACC TACCCAAGACCATTGACAACCATCGAGTGTATGATGAAACC < 41bp 0.760036141865135 0.426608556757257 0.18479714 0.04757905 prediction 0.52007228373027 Functional Loss - RPF1 ENSG00000117133 CDS Human protein_coding chr1:84948634 chr1:84948636 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_62270 0 0 1 0 2 RPF1 chr1:84948598 3'AG 84948598 Downstream 39bp
chr1 84948636 84948636 1 + G T SARC 84948634 + 84948614 84948654 41 TACCCAAGACCATTGACAACCAGCGAGTGTATGATGAAACC TACCCAAGACCATTGACAACCATCGAGTGTATGATGAAACC < 41bp 0.760036141865135 0.426608556757257 0.18479714 0.04757905 prediction 0.52007228373027 Functional Loss - RPF1 ENSG00000117133 CDS Human protein_coding chr1:84948634 chr1:84948636 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_62270 0 0 1 0 2 RPF1 chr1:84948678 5'GT 84948678 Upstream 43bp
chr12 66731874 66731874 1 + G T UCEC 66731871 + 66731851 66731891 41 TTTTCAAGCCCACCGATAATCAAGAAACTTAGTTTTATTTC TTTTCAAGCCCACCGATAATCAATAAACTTAGTTTTATTTC < 41bp 0.760031888108838 0.402429088421461 0.88102037 0.20497045 prediction 0.520063776217677 Functional Loss - HELB ENSG00000127311 CDS Human protein_coding chr12:66731871 chr12:66731874 stopgain 0.890 0 24 hm5C_associated_SNPs_62271 0 0 1 0 1 HELB chr12:66731781 3'AG 66731781 Downstream 94bp
chr21 22746235 22746235 1 + A T LUSC 22746231 + 22746211 22746251 41 GGCAGCATGGAAGCTCATCACTGCATATTAAAGATGTGAAG GGCAGCATGGAAGCTCATCACTGCTTATTAAAGATGTGAAG < 41bp 0.760015408081581 0.4417562728815 0.27694726 0.09396094 prediction 0.520030816163162 Functional Loss - NCAM2 ENSG00000154654 CDS Human protein_coding chr21:22746231 chr21:22746235 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_62273 0 0 1 0 2 NCAM2 chr21:22746183 3'AG 22746183 Downstream 53bp
chr21 22746235 22746235 1 + A T LUSC 22746231 + 22746211 22746251 41 GGCAGCATGGAAGCTCATCACTGCATATTAAAGATGTGAAG GGCAGCATGGAAGCTCATCACTGCTTATTAAAGATGTGAAG < 41bp 0.760015408081581 0.4417562728815 0.27694726 0.09396094 prediction 0.520030816163162 Functional Loss - NCAM2 ENSG00000154654 CDS Human protein_coding chr21:22746231 chr21:22746235 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_62273 0 0 1 0 2 NCAM2 chr21:22746333 5'GT 22746333 Upstream 99bp
chr7 121684608 121684608 1 + G T UCEC 121684605 + 121684585 121684625 41 GACCAGCAGGCAAAACAAAGCTAGAGAAACAATTCCAGGTG GACCAGCAGGCAAAACAAAGCTATAGAAACAATTCCAGGTG < 41bp 0.76001111263312 0.410435104853784 0.7192253 0.35838175 prediction 0.52002222526624 Functional Loss - PTPRZ1 ENSG00000106278 CDS Human protein_coding chr7:121684605 chr7:121684608 stopgain 0.998 1 24 hm5C_associated_SNPs_62276 0 0 0 0 1 PTPRZ1 chr7:121684622 5'GT 121684622 Upstream 15bp
chr1 207297310 207297310 1 + G T GBM 207297307 + 207297287 207297327 41 CCACTAGTCGTTGTGAAGTCCAAGATAGAGGAGTTGGCTGG CCACTAGTCGTTGTGAAGTCCAATATAGAGGAGTTGGCTGG < 41bp 0.760006471350662 0.37279212372748 0.09452969 0.08353779 prediction 0.520012942701325 Functional Loss - C4BPA ENSG00000123838 CDS Human protein_coding chr1:207297307 chr1:207297310 nonsynonymous SNV 0.437 3 24 hm5C_associated_SNPs_62278 0 0 1 0 2 C4BPA chr1:207297267 3'AG 207297267 Downstream 44bp
chr1 207297310 207297310 1 + G T GBM 207297307 + 207297287 207297327 41 CCACTAGTCGTTGTGAAGTCCAAGATAGAGGAGTTGGCTGG CCACTAGTCGTTGTGAAGTCCAATATAGAGGAGTTGGCTGG < 41bp 0.760006471350662 0.37279212372748 0.09452969 0.08353779 prediction 0.520012942701325 Functional Loss - C4BPA ENSG00000123838 CDS Human protein_coding chr1:207297307 chr1:207297310 nonsynonymous SNV 0.437 3 24 hm5C_associated_SNPs_62278 0 0 1 0 2 C4BPA chr1:207297352 5'GT 207297352 Upstream 43bp
chr11 15260550 15260550 1 + G T BLCA 15260548 + 15260528 15260568 41 CAGCCTGTGAGCGAGTCCAGCAGAAAGCTGCAGTGACCCTG CAGCCTGTGAGCGAGTCCAGCATAAAGCTGCAGTGACCCTG < 41bp 0.759993111458393 0.404321254275975 0.656303 0.34356946 prediction 0.519986222916786 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15260548 chr11:15260550 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_62279 0 0 0 0 2 INSC chr11:15260465 3'AG 15260465 Downstream 86bp
chr11 15260550 15260550 1 + G T BLCA 15260548 + 15260528 15260568 41 CAGCCTGTGAGCGAGTCCAGCAGAAAGCTGCAGTGACCCTG CAGCCTGTGAGCGAGTCCAGCATAAAGCTGCAGTGACCCTG < 41bp 0.759993111458393 0.404321254275975 0.656303 0.34356946 prediction 0.519986222916786 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15260548 chr11:15260550 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_62279 0 0 0 0 2 INSC chr11:15260620 5'GT 15260620 Upstream 71bp
chr1 213124953 213124953 1 + G C CESC 213124949 + 213124929 213124969 41 AGGCGCCAAAGGCACCCGGTCCCGGAGCAGCCACGCGCGGC AGGCGCCAAAGGCACCCGGTCCCGCAGCAGCCACGCGCGGC < 41bp 0.759991923746748 0.4860223309896 0.21643016 0.2572173 prediction 0.519983847493497 Functional Loss - VASH2 ENSG00000143494 CDS Human protein_coding chr1:213124949 chr1:213124953 synonymous SNV . 0 25 hm5C_associated_SNPs_62282 0 0 0 0 1 VASH2 chr1:213124931 3'AG 213124931 Downstream 23bp
chr16 31120644 31120644 1 + G T BRCA 31120642 + 31120622 31120662 41 GCTCCGGGCCCGCTCGACGTCGGCCACCGACACACACCACG GCTCCGGGCCCGCTCGACGTCGTCCACCGACACACACCACG < 41bp 0.759981355118212 0.41410572060246 0.16588762 0.05439645 prediction 0.519962710236425 Functional Loss - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31120642 chr16:31120644 nonsynonymous SNV 0.153 1 23 hm5C_associated_SNPs_62284 0 0 1 0 1 BCKDK chr16:31120739 5'GT 31120739 Upstream 96bp
chr11 1951052 1951052 1 + G T COAD 1951049 + 1951029 1951069 41 GTGTGGACCAGAGGAGAAACCGAGACCCAAGTGAGTGTGGG GTGTGGACCAGAGGAGAAACCGATACCCAAGTGAGTGTGGG < 41bp 0.894253170138426 0.63427452748763 0.70165473 0.3123117 prediction 0.519957285301593 Functional Loss - TNNT3 ENSG00000130595 CDS Human other chr11:1951049 chr11:1951052 nonsynonymous SNV 0.976 3 24 hm5C_associated_SNPs_62285 0 0 0 0 2 TNNT3 chr11:1951040 3'AG 1951040 Downstream 13bp
chr11 1951052 1951052 1 + G T COAD 1951049 + 1951029 1951069 41 GTGTGGACCAGAGGAGAAACCGAGACCCAAGTGAGTGTGGG GTGTGGACCAGAGGAGAAACCGATACCCAAGTGAGTGTGGG < 41bp 0.894253170138426 0.63427452748763 0.70165473 0.3123117 prediction 0.519957285301593 Functional Loss - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1951049 chr11:1951052 nonsynonymous SNV 0.976 3 24 hm5C_associated_SNPs_62285 0 0 0 0 2 TNNT3 chr11:1951058 5'GT 1951058 Upstream 7bp
chr19 17835951 17835951 1 + G T LUSC 17835949 + 17835929 17835969 41 GGGGGAGCTGCTGCTACAGACAGGGGGCTTCTCGCCTCACC GGGGGAGCTGCTGCTACAGACATGGGGCTTCTCGCCTCACC < 41bp 0.888675742346222 0.628699672131972 0.94842744 0.8664323 prediction 0.5199521404285 Functional Loss - MAP1S ENSG00000130479 CDS Human protein_coding chr19:17835949 chr19:17835951 nonsynonymous SNV 0.254 4 23 hm5C_associated_SNPs_62286 0 0 1 1 2 MAP1S chr19:17835858 3'AG 17835858 Downstream 94bp
chr19 17835951 17835951 1 + G T LUSC 17835949 + 17835929 17835969 41 GGGGGAGCTGCTGCTACAGACAGGGGGCTTCTCGCCTCACC GGGGGAGCTGCTGCTACAGACATGGGGCTTCTCGCCTCACC < 41bp 0.888675742346222 0.628699672131972 0.94842744 0.8664323 prediction 0.5199521404285 Functional Loss - MAP1S ENSG00000130479 CDS Human protein_coding chr19:17835949 chr19:17835951 nonsynonymous SNV 0.254 4 23 hm5C_associated_SNPs_62286 0 0 1 1 2 MAP1S chr19:17835998 5'GT 17835998 Upstream 48bp
chr14 76107326 76107326 1 + G T UCEC 76107323 + 76107303 76107343 41 TTATGACTGGCTATCTCCCACTGGGATTTGAGTTTGCTGTG TTATGACTGGCTATCTCCCACTGTGATTTGAGTTTGCTGTG < 41bp 0.759970517213115 0.36218384612929 0.42005894 0.08150029 prediction 0.519941034426229 Functional Loss - FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76107323 chr14:76107326 stopgain 0.960 1 24 hm5C_associated_SNPs_62287 0 0 0 0 2 FLVCR2 chr14:76107298 3'AG 76107298 Downstream 29bp
chr14 76107326 76107326 1 + G T UCEC 76107323 + 76107303 76107343 41 TTATGACTGGCTATCTCCCACTGGGATTTGAGTTTGCTGTG TTATGACTGGCTATCTCCCACTGTGATTTGAGTTTGCTGTG < 41bp 0.759970517213115 0.36218384612929 0.42005894 0.08150029 prediction 0.519941034426229 Functional Loss - FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76107323 chr14:76107326 stopgain 0.960 1 24 hm5C_associated_SNPs_62287 0 0 0 0 2 FLVCR2 chr14:76107403 5'GT 76107403 Upstream 78bp
chr10 6262820 6262820 1 + G T LUAD 6262817 + 6262797 6262837 41 GCGACTCAGGCCTGTCCAGCCGGGGCAAGAAGGTGCGGGGT GCGACTCAGGCCTGTCCAGCCGGTGCAAGAAGGTGCGGGGT < 41bp 0.909405323197598 0.64944249682269 0.9368105 0.91845953 prediction 0.519925652749816 Functional Loss - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6262817 chr10:6262820 nonsynonymous SNV 0.971 5 24 hm5C_associated_SNPs_62292 0 0 1 0 1 PFKFB3 chr10:6262828 5'GT 6262828 Upstream 9bp
chr1 16356570 16356570 1 + G T UCEC 16356568 + 16356548 16356588 41 GCCCGGGGGGTATGCTCTGGCAGGTGAGTGGGTCACGGCCC GCCCGGGGGGTATGCTCTGGCATGTGAGTGGGTCACGGCCC < 41bp 0.883127392969981 0.62316755234054 0.9332714 0.56125516 prediction 0.519919681258882 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16356568 chr1:16356570 nonsynonymous SNV 0.240 5 23 hm5C_associated_SNPs_62294 0 0 0 0 1 CLCNKA chr1:16356570 5'GT 16356570 Upstream 1bp
chr11 32605475 32605475 1 + G T UCEC 32605473 + 32605453 32605493 41 TCGACATCAGTGAAGAAGATCAGGTGTGCTTCGGTCTACGG TCGACATCAGTGAAGAAGATCATGTGTGCTTCGGTCTACGG < 41bp 0.876564833883433 0.616623343341299 0.9024071 0.27810058 prediction 0.519882981084267 Functional Loss - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32605473 chr11:32605475 nonsynonymous SNV 0.957 3 23 hm5C_associated_SNPs_62298 0 0 1 0 1 EIF3M chr11:32605475 5'GT 32605475 Upstream 1bp
chr3 155652795 155652795 1 + C T LUSC 155652793 + 155652773 155652813 41 CAGGGGTGCTCAGTACTTTACGCCAAGCTGATTTTGAGGCC CAGGGGTGCTCAGTACTTTACGTCAAGCTGATTTTGAGGCC < 41bp 0.830708562011833 0.570770764357041 0.18692827 0.12453571 prediction 0.519875595309585 Functional Loss - GMPS ENSG00000163655 CDS Human protein_coding chr3:155652793 chr3:155652795 synonymous SNV . 0 23 hm5C_associated_SNPs_62299 0 0 0 0 1 GMPS chr3:155652835 5'GT 155652835 Upstream 41bp
chr10 12291674 12291674 1 + C T BRCA 12291672 + 12291652 12291692 41 CCCAAGGACTTTGTAGACCTCTCTACTGGGGAGGACGCTCA CCCAAGGACTTTGTAGACCTCTTTACTGGGGAGGACGCTCA < 41bp 0.759933911153184 0.466457829142794 0.9134936 0.16930714 prediction 0.519867822306367 Functional Loss - CDC123 ENSG00000151465 CDS Human protein_coding chr10:12291672 chr10:12291674 nonsynonymous SNV 0.423 4 23 hm5C_associated_SNPs_62300 0 0 1 0 2 CDC123 chr10:12291580 3'AG 12291580 Downstream 95bp
chr10 12291674 12291674 1 + C T BRCA 12291672 + 12291652 12291692 41 CCCAAGGACTTTGTAGACCTCTCTACTGGGGAGGACGCTCA CCCAAGGACTTTGTAGACCTCTTTACTGGGGAGGACGCTCA < 41bp 0.759933911153184 0.466457829142794 0.9134936 0.16930714 prediction 0.519867822306367 Functional Loss - CDC123 ENSG00000151465 CDS Human protein_coding chr10:12291672 chr10:12291674 nonsynonymous SNV 0.423 4 23 hm5C_associated_SNPs_62300 0 0 1 0 2 CDC123 chr10:12291717 5'GT 12291717 Upstream 44bp
chr5 31317975 31317975 1 + C T BRCA 31317973 + 31317953 31317993 41 GCGGAGGCGCTCATCCACCCCACGGGACTGAGCACGGGGGC GCGGAGGCGCTCATCCACCCCATGGGACTGAGCACGGGGGC < 41bp 0.778346693554436 0.518412785499331 0.099898666 0.09358442 prediction 0.51986781611021 Functional Loss - CDH6 ENSG00000113361 CDS Human protein_coding chr5:31317973 chr5:31317975 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_62301 0 0 0 0 1 CDH6 chr5:31318031 5'GT 31318031 Upstream 57bp
chr2 74154148 74154148 1 + G T LUSC 74154145 + 74154125 74154165 41 AGAGGCCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCAT AGAGGCCTGCACGCGGGGCGCGGTCCCCGAAGGCTCTCCAT < 41bp 0.910527896256905 0.650613269115836 0.9079871 0.85082734 prediction 0.519829254282138 Functional Loss - DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154145 chr2:74154148 synonymous SNV . 0 24 hm5C_associated_SNPs_62308 0 0 1 0 1 DGUOK chr2:74154179 5'GT 74154179 Upstream 32bp
chr1 150997258 150997258 1 + A T LUAD 150997254 + 150997234 150997274 41 AGAGATCTTGGACAGGCAAACTGCAGCCCTTCTGCATGGTA AGAGATCTTGGACAGGCAAACTGCTGCCCTTCTGCATGGTA < 41bp 0.759898675416272 0.430969046826603 0.17261136 0.19731978 prediction 0.519797350832545 Functional Loss - PRUNE1 ENSG00000143363 CDS Human protein_coding chr1:150997254 chr1:150997258 synonymous SNV . 0 25 hm5C_associated_SNPs_62313 0 0 0 0 1 PRUNE1 chr1:150997271 5'GT 150997271 Upstream 14bp
chr2 95954325 95954325 1 + G T BLCA 95954323 + 95954303 95954343 41 TCCAAATACTTCCGTCCTATCCGGAAACGCCTCAGGTGAGG TCCAAATACTTCCGTCCTATCCTGAAACGCCTCAGGTGAGG < 41bp 0.759893031318881 0.416338127271838 0.27728242 0.03649953 prediction 0.519786062637762 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95954323 chr2:95954325 nonsynonymous SNV 0.958 1 23 hm5C_associated_SNPs_62315 0 0 0 0 2 PROM2 chr2:95954231 3'AG 95954231 Downstream 95bp
chr2 95954325 95954325 1 + G T BLCA 95954323 + 95954303 95954343 41 TCCAAATACTTCCGTCCTATCCGGAAACGCCTCAGGTGAGG TCCAAATACTTCCGTCCTATCCTGAAACGCCTCAGGTGAGG < 41bp 0.759893031318881 0.416338127271838 0.27728242 0.03649953 prediction 0.519786062637762 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95954323 chr2:95954325 nonsynonymous SNV 0.958 1 23 hm5C_associated_SNPs_62315 0 0 0 0 2 PROM2 chr2:95954337 5'GT 95954337 Upstream 13bp
chr19 17972963 17972963 1 + C T UCEC 17972961 + 17972941 17972981 41 GATCTGGCTGCGCTATGACTCCCGGAGCGGCACCCACAACA GATCTGGCTGCGCTATGACTCCTGGAGCGGCACCCACAACA < 41bp 0.763403006724958 0.503519022521372 0.1087293 0.109375566 prediction 0.519767968407172 Functional Loss - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17972961 chr19:17972963 nonsynonymous SNV 0.907 3 23 hm5C_associated_SNPs_62317 0 0 1 0 2 RPL18A chr19:17972903 3'AG 17972903 Downstream 61bp
chr19 17972963 17972963 1 + C T UCEC 17972961 + 17972941 17972981 41 GATCTGGCTGCGCTATGACTCCCGGAGCGGCACCCACAACA GATCTGGCTGCGCTATGACTCCTGGAGCGGCACCCACAACA < 41bp 0.763403006724958 0.503519022521372 0.1087293 0.109375566 prediction 0.519767968407172 Functional Loss - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17972961 chr19:17972963 nonsynonymous SNV 0.907 3 23 hm5C_associated_SNPs_62317 0 0 1 0 2 RPL18A chr19:17973032 5'GT 17973032 Upstream 70bp
chr3 189526227 189526227 1 + C T PRAD 189526225 + 189526205 189526245 41 GATGCTCTCTCTCCATCACCCGCCATCCCCTCCAACACCGA GATGCTCTCTCTCCATCACCCGTCATCCCCTCCAACACCGA < 41bp 0.777803510699234 0.517924791816165 0.010735184 0.0025550425 prediction 0.51975743776614 Functional Loss - TP63 ENSG00000073282 CDS Human protein_coding chr3:189526225 chr3:189526227 nonsynonymous SNV 0.732 2 23 hm5C_associated_SNPs_62319 0 0 0 0 1 TP63 chr3:189526315 5'GT 189526315 Upstream 89bp
chr1 92459751 92459751 1 + G T UCEC 92459748 + 92459728 92459768 41 ACCAATTAGCATTTAATTATCAAGAATTAGAACATTTACAG ACCAATTAGCATTTAATTATCAATAATTAGAACATTTACAG < 41bp 0.759878053916184 0.405718245358745 0.2030499 0.054679334 prediction 0.519756107832369 Functional Loss - BRDT ENSG00000137948 CDS Human protein_coding chr1:92459748 chr1:92459751 stopgain 0.147 0 24 hm5C_associated_SNPs_62320 0 0 0 0 1 BRDT chr1:92459811 5'GT 92459811 Upstream 61bp
chr2 73901017 73901017 1 + G T COAD 73901015 + 73900995 73901035 41 AGCGTCTGAAGTTAATAGTCCAGGAGAGAAAGCTGCAGAGC AGCGTCTGAAGTTAATAGTCCATGAGAGAAAGCTGCAGAGC < 41bp 0.862847059168757 0.602974687880745 0.54547286 0.16968828 prediction 0.519744742576023 Functional Loss - ALMS1P1 ENSG00000163016 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:73901015 chr2:73901017 . . 0 23 hm5C_associated_SNPs_62321 0 0 0 0 1 ALMS1P1 chr2:73900940 3'AG 73900940 Downstream 78bp
chr9 72785518 72785518 1 + G T GBM 72785515 + 72785495 72785535 41 AGAAACTCCCACTTCCTACACAGGACCAAAGGGAGATCACA AGAAACTCCCACTTCCTACACAGTACCAAAGGGAGATCACA < 41bp 0.759869074809767 0.366013073050864 0.11210987 0.024314106 prediction 0.519738149619533 Functional Loss - MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72785515 chr9:72785518 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_62322 0 0 0 2 2 MAMDC2 chr9:72785543 5'GT 72785543 Upstream 26bp
chr9 72785518 72785518 1 + G T GBM 72785515 + 72785495 72785535 41 AGAAACTCCCACTTCCTACACAGGACCAAAGGGAGATCACA AGAAACTCCCACTTCCTACACAGTACCAAAGGGAGATCACA < 41bp 0.759869074809767 0.366013073050864 0.11210987 0.024314106 prediction 0.519738149619533 Functional Loss - MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72785515 chr9:72785518 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_62322 0 0 0 2 2 MAMDC2 chr9:72785547 5'GT 72785547 Upstream 30bp
chr11 15243120 15243120 1 + C T UCEC 15243118 + 15243098 15243138 41 GCTGTGGTGGCCCAGGTCACCTCCCCACACCTGCCCGTCAC GCTGTGGTGGCCCAGGTCACCTTCCCACACCTGCCCGTCAC < 41bp 0.791248937287831 0.531387276828343 0.12503931 0.024323761 prediction 0.519723320918975 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15243118 chr11:15243120 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_62325 0 0 0 0 2 INSC chr11:15243023 3'AG 15243023 Downstream 98bp
chr11 15243120 15243120 1 + C T UCEC 15243118 + 15243098 15243138 41 GCTGTGGTGGCCCAGGTCACCTCCCCACACCTGCCCGTCAC GCTGTGGTGGCCCAGGTCACCTTCCCACACCTGCCCGTCAC < 41bp 0.791248937287831 0.531387276828343 0.12503931 0.024323761 prediction 0.519723320918975 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15243118 chr11:15243120 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_62325 0 0 0 0 2 INSC chr11:15243194 5'GT 15243194 Upstream 75bp
chr20 30193954 30193954 1 + G C rs8116155 30193953 + 30193933 30193973 41 CCAGGGGGCAAGAGGAATTACGTGCTCTGTGGGTCTCCCCC CCAGGGGGCAAGAGGAATTACCTGCTCTGTGGGTCTCCCCC < 41bp 0.759858519537473 0.488936136852185 0.30447054 0.23767367 prediction 0.519717039074947 Functional Loss - ID1 ENSG00000125968 UTR3 Human protein_coding chr20:30193953 chr20:30193954 . . 0 22 hm5C_associated_SNPs_62326 0 0 1 0 1 ID1 chr20:30193856 3'AG 30193856 Downstream 99bp
chr20 3802911 3802911 1 + C T LUAD 3802909 + 3802889 3802929 41 GTGCCGAGAGGGACAGGCTTCTCCGGAAGGAACAGATTTTA GTGCCGAGAGGGACAGGCTTCTTCGGAAGGAACAGATTTTA < 41bp 0.759853834346151 0.479575042979943 0.41090554 0.42789286 prediction 0.519707668692302 Functional Loss - AP5S1 ENSG00000125843 CDS Human protein_coding chr20:3802909 chr20:3802911 synonymous SNV . 0 23 hm5C_associated_SNPs_62328 0 0 1 0 1 AP5S1 chr20:3802940 5'GT 3802940 Upstream 30bp
chr2 29150518 29150518 1 + T C LAML 29150517 + 29150497 29150537 41 TGCAGCTATCAAGCCCGCTCCTCCACAAACCGAGCAAGTAG TGCAGCTATCAAGCCCGCTCCCCCACAAACCGAGCAAGTAG < 41bp 0.787364801587689 0.52752924738857 0.941259 0.03227982 prediction 0.519671108398238 Functional Loss - WDR43 ENSG00000163811 CDS Human protein_coding chr2:29150517 chr2:29150518 synonymous SNV . 0 22 hm5C_associated_SNPs_62330 0 0 1 0 2 WDR43 chr2:29150435 3'AG 29150435 Downstream 84bp
chr2 29150518 29150518 1 + T C LAML 29150517 + 29150497 29150537 41 TGCAGCTATCAAGCCCGCTCCTCCACAAACCGAGCAAGTAG TGCAGCTATCAAGCCCGCTCCCCCACAAACCGAGCAAGTAG < 41bp 0.787364801587689 0.52752924738857 0.941259 0.03227982 prediction 0.519671108398238 Functional Loss - WDR43 ENSG00000163811 CDS Human protein_coding chr2:29150517 chr2:29150518 synonymous SNV . 0 22 hm5C_associated_SNPs_62330 0 0 1 0 2 WDR43 chr2:29150566 5'GT 29150566 Upstream 49bp
chr5 132015484 132015484 1 + C T COAD 132015482 + 132015462 132015502 41 CAGCCACCATGAGAAGGACACTCGCTGCCTGGGTGCGACTG CAGCCACCATGAGAAGGACACTTGCTGCCTGGGTGCGACTG < 41bp 0.776455006085866 0.516628037858822 0.2270926 0.1659227 prediction 0.519653936454087 Functional Loss - IL4 ENSG00000113520 CDS Human protein_coding chr5:132015482 chr5:132015484 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_62332 0 0 0 0 2 IL4 chr5:132015406 3'AG 132015406 Downstream 79bp
chr5 132015484 132015484 1 + C T COAD 132015482 + 132015462 132015502 41 CAGCCACCATGAGAAGGACACTCGCTGCCTGGGTGCGACTG CAGCCACCATGAGAAGGACACTTGCTGCCTGGGTGCGACTG < 41bp 0.776455006085866 0.516628037858822 0.2270926 0.1659227 prediction 0.519653936454087 Functional Loss - IL4 ENSG00000113520 CDS Human protein_coding chr5:132015482 chr5:132015484 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_62332 0 0 0 0 2 IL4 chr5:132015582 5'GT 132015582 Upstream 99bp
chr6 39047386 39047386 1 + G T COAD 39047383 + 39047363 39047403 41 TCATCCCCCTGCTGGGGACTCATGAGGTCATCTTTGCCTTT TCATCCCCCTGCTGGGGACTCATTAGGTCATCTTTGCCTTT < 41bp 0.759826496064947 0.361091515116392 0.39423788 0.16058302 prediction 0.519652992129895 Functional Loss - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39047383 chr6:39047386 stopgain 0.998 1 24 hm5C_associated_SNPs_62333 0 0 0 3 2 GLP1R chr6:39047340 3'AG 39047340 Downstream 47bp
chr6 39047386 39047386 1 + G T COAD 39047383 + 39047363 39047403 41 TCATCCCCCTGCTGGGGACTCATGAGGTCATCTTTGCCTTT TCATCCCCCTGCTGGGGACTCATTAGGTCATCTTTGCCTTT < 41bp 0.759826496064947 0.361091515116392 0.39423788 0.16058302 prediction 0.519652992129895 Functional Loss - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39047383 chr6:39047386 stopgain 0.998 1 24 hm5C_associated_SNPs_62333 0 0 0 3 2 GLP1R chr6:39047478 5'GT 39047478 Upstream 93bp
chr11 118452014 118452014 1 + A T UCEC 118452010 + 118451990 118452030 41 AGCAGGAAAGGCTATTGTTTCTCGACAGTTTGTGGAAATGA AGCAGGAAAGGCTATTGTTTCTCGTCAGTTTGTGGAAATGA < 41bp 0.869952653464412 0.610132729375669 0.079740256 0.026432127 prediction 0.519639848177486 Functional Loss - ARCN1 ENSG00000095139 CDS Human protein_coding chr11:118452010 chr11:118452014 synonymous SNV . 0 25 hm5C_associated_SNPs_62334 0 0 1 0 1 ARCN1 chr11:118451961 3'AG 118451961 Downstream 54bp
chr1 232144620 232144620 1 + G T STAD 232144618 + 232144598 232144638 41 AGCCTACAGCTCCAGGAAGCCAGGGGAAGCCTGTCTGTAGA AGCCTACAGCTCCAGGAAGCCATGGGAAGCCTGTCTGTAGA < 41bp 0.759815974862429 0.450472623549349 0.91037405 0.3437463 prediction 0.519631949724859 Functional Loss - DISC1 ENSG00000162946 CDS Human protein_coding chr1:232144618 chr1:232144620 nonsynonymous SNV 0.062 1 23 hm5C_associated_SNPs_62335 0 0 1 0 1 DISC1 chr1:232144531 3'AG 232144531 Downstream 90bp
chr2 102476325 102476325 1 + A T LUAD 102476321 + 102476301 102476341 41 ACGAGCCTGCTGACCGAGCGCGAGAGGTATCCTCTTTCCTT ACGAGCCTGCTGACCGAGCGCGAGTGGTATCCTCTTTCCTT < 41bp 0.759815129729037 0.470579074522893 0.87002075 0.29531193 prediction 0.519630259458075 Functional Loss - MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102476321 chr2:102476325 nonsynonymous SNV 0.838 3 25 hm5C_associated_SNPs_62336 0 0 1 0 1 MAP4K4 chr2:102476326 5'GT 102476326 Upstream 2bp
chr2 97017715 97017715 1 + C T SKCM 97017713 + 97017693 97017733 41 CTCTCTCCACGGGAGAACCTCTCGAGTTGCCAGAGTTAGGT CTCTCTCCACGGGAGAACCTCTTGAGTTGCCAGAGTTAGGT < 41bp 0.823250198998752 0.563438178653196 0.6165887 0.059800416 prediction 0.519624040691113 Functional Loss - NCAPH ENSG00000121152 CDS Human protein_coding chr2:97017713 chr2:97017715 synonymous SNV . 0 23 hm5C_associated_SNPs_62338 0 0 1 0 1 NCAPH chr2:97017758 5'GT 97017758 Upstream 44bp
chr20 61943892 61943892 1 + G T ESCA 61943889 + 61943869 61943909 41 GCTCCTCTACGCTGACTGGCCGGGTGACCACCAGTGAGTGG GCTCCTCTACGCTGACTGGCCGGTTGACCACCAGTGAGTGG < 41bp 0.759801599239199 0.370686070564169 0.9050654 0.2636869 prediction 0.519603198478398 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61943889 chr20:61943892 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_62341 0 0 0 0 1 COL20A1 chr20:61943901 5'GT 61943901 Upstream 10bp
chr12 58016868 58016868 1 + C T SKCM 58016866 + 58016846 58016886 41 CTCTTCTCTTGCTTTCCCAACTCGGCTACGCTGGCCACCAC CTCTTCTCTTGCTTTCCCAACTTGGCTACGCTGGCCACCAC < 41bp 0.78693114410109 0.527129582926058 0.1444329 0.12478271 prediction 0.519603122350065 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58016866 chr12:58016868 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_62342 0 0 0 0 2 SLC26A10 chr12:58016807 3'AG 58016807 Downstream 62bp
chr12 58016868 58016868 1 + C T SKCM 58016866 + 58016846 58016886 41 CTCTTCTCTTGCTTTCCCAACTCGGCTACGCTGGCCACCAC CTCTTCTCTTGCTTTCCCAACTTGGCTACGCTGGCCACCAC < 41bp 0.78693114410109 0.527129582926058 0.1444329 0.12478271 prediction 0.519603122350065 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58016866 chr12:58016868 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_62342 0 0 0 0 2 SLC26A10 chr12:58016920 5'GT 58016920 Upstream 53bp
chr22 41918884 41918884 1 + G T HNSC 41918882 + 41918862 41918902 41 CTATGAAGATATGGGGCGCTCAGCAGCTGTGGCCAAGCAGG CTATGAAGATATGGGGCGCTCATCAGCTGTGGCCAAGCAGG < 41bp 0.883127123464728 0.623328821703115 0.54611236 0.05954215 prediction 0.519596603523227 Functional Loss - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41918882 chr22:41918884 nonsynonymous SNV 0.983 5 23 hm5C_associated_SNPs_62343 0 0 1 0 1 ACO2 chr22:41918834 3'AG 41918834 Downstream 51bp
chr17 38349977 38349977 1 + G T LGG 38349975 + 38349955 38349995 41 AGGCCTATGTGCGCCAGTTTCAGGTCATCGACAACCAGAAC AGGCCTATGTGCGCCAGTTTCATGTCATCGACAACCAGAAC < 41bp 0.7597851856069 0.429257557562121 0.85281086 0.060887516 prediction 0.519570371213799 Functional Loss - RAPGEFL1 ENSG00000108352 CDS Human protein_coding chr17:38349975 chr17:38349977 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_62346 0 0 1 0 1 RAPGEFL1 chr17:38349916 3'AG 38349916 Downstream 62bp
chr10 70987072 70987072 1 + C T HNSC 70987070 + 70987050 70987090 41 CTGGCAAAGGACACCAACCCCACGGCTGCAGTGAAGATGTT CTGGCAAAGGACACCAACCCCATGGCTGCAGTGAAGATGTT < 41bp 0.759783892423107 0.496381556603442 0.15997386 0.076704055 prediction 0.519567784846214 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:70987070 chr10:70987072 nonsynonymous SNV 0.908 4 23 hm5C_associated_SNPs_62347 0 0 0 0 1 HKDC1 chr10:70987125 5'GT 70987125 Upstream 54bp
chr12 112888149 112888149 1 + G T UCEC 112888146 + 112888126 112888166 41 AATGGAGCTGTCACCCACATCAAGATTCAGAACACTGGTGA AATGGAGCTGTCACCCACATCAATATTCAGAACACTGGTGA < 41bp 0.7597778858772 0.38060442989002 0.15339261 0.122713655 prediction 0.519555771754399 Functional Loss - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112888146 chr12:112888149 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_62349 0 0 1 0 1 PTPN11 chr12:112888122 3'AG 112888122 Downstream 28bp
chr22 21141179 21141179 1 + C T rs5904 21141177 + 21141157 21141197 41 AAACAGTTCAAGCACCAAGGCACGATCACAGTGAACGAGGA AAACAGTTCAAGCACCAAGGCATGATCACAGTGAACGAGGA < 41bp 0.784636516686545 0.524862610339437 0.02364391 0.026086897 prediction 0.519547812694217 Functional Loss - SERPIND1 ENSG00000099937 CDS Human protein_coding chr22:21141177 chr22:21141179 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_62350 0 0 1 0 1 SERPIND1 chr22:21141163 3'AG 21141163 Downstream 17bp
chr3 56647651 56647651 1 + G T UCEC 56647649 + 56647629 56647669 41 GCCCAGGTAGAAGAGAAGCGCAGGAAGAAACAACTGGAGGA GCCCAGGTAGAAGAGAAGCGCATGAAGAAACAACTGGAGGA < 41bp 0.861525241909386 0.601788233228651 0.8412328 0.35783693 prediction 0.51947401736147 Functional Loss - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56647649 chr3:56647651 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_62355 0 0 1 2 2 CCDC66 chr3:56647617 3'AG 56647617 Downstream 35bp
chr3 56647651 56647651 1 + G T UCEC 56647649 + 56647629 56647669 41 GCCCAGGTAGAAGAGAAGCGCAGGAAGAAACAACTGGAGGA GCCCAGGTAGAAGAGAAGCGCATGAAGAAACAACTGGAGGA < 41bp 0.861525241909386 0.601788233228651 0.8412328 0.35783693 prediction 0.51947401736147 Functional Loss - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56647649 chr3:56647651 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_62355 0 0 1 2 2 CCDC66 chr3:56647639 3'AG 56647639 Downstream 13bp
chr8 26441374 26441374 1 + G T LUAD 26441371 + 26441351 26441391 41 GAAGACCATCGAGGCCCACTCCCGGATGGTGATCCCCGGAG GAAGACCATCGAGGCCCACTCCCTGATGGTGATCCCCGGAG < 41bp 0.759715490250266 0.356902359340465 0.38718075 0.24602082 prediction 0.519430980500533 Functional Loss - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26441371 chr8:26441374 nonsynonymous SNV 0.985 2 24 hm5C_associated_SNPs_62361 0 0 1 0 1 DPYSL2 chr8:26441315 3'AG 26441315 Downstream 60bp
chr19 3532599 3532599 1 + C T LUAD 3532597 + 3532577 3532617 41 CAACCACTGCAGTGTATCGACACGGGCTCCCAAGTGTGCAA CAACCACTGCAGTGTATCGACATGGGCTCCCAAGTGTGCAA < 41bp 0.759694314448723 0.497516432864358 0.47090507 0.4348221 prediction 0.519388628897447 Functional Loss - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3532597 chr19:3532599 nonsynonymous SNV 0.949 4 23 hm5C_associated_SNPs_62364 0 0 1 0 1 FZR1 chr19:3532648 5'GT 3532648 Upstream 50bp
chr10 131565118 131565118 1 + G C ACC 131565114 + 131565094 131565134 41 GGAGCCGTGGGCAACTACTCCGGAGGACTGGCCGTGAAGGA GGAGCCGTGGGCAACTACTCCGGACGACTGGCCGTGAAGGA < 41bp 0.778280837120705 0.518587808299707 0.9029565 0.88672197 prediction 0.519386057641995 Functional Loss - MGMT ENSG00000170430 CDS Human protein_coding chr10:131565114 chr10:131565118 nonsynonymous SNV 0.921 4 25 hm5C_associated_SNPs_62365 0 0 0 0 1 MGMT chr10:131565052 3'AG 131565052 Downstream 67bp
chr2 157435456 157435456 1 + G T UCEC 157435453 + 157435433 157435473 41 TTATGAAATGGGCTATAAATCTCGATCAGAACAGTTAACAG TTATGAAATGGGCTATAAATCTCTATCAGAACAGTTAACAG < 41bp 0.888771591481147 0.629094367219182 0.3795318 0.82686555 prediction 0.519354448523931 Functional Loss - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157435453 chr2:157435456 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_62371 0 0 1 0 2 GPD2 chr2:157435401 3'AG 157435401 Downstream 56bp
chr2 157435456 157435456 1 + G T UCEC 157435453 + 157435433 157435473 41 TTATGAAATGGGCTATAAATCTCGATCAGAACAGTTAACAG TTATGAAATGGGCTATAAATCTCTATCAGAACAGTTAACAG < 41bp 0.888771591481147 0.629094367219182 0.3795318 0.82686555 prediction 0.519354448523931 Functional Loss - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157435453 chr2:157435456 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_62371 0 0 1 0 2 GPD2 chr2:157435513 5'GT 157435513 Upstream 58bp
chr19 10568620 10568620 1 + C T UCEC 10568618 + 10568598 10568638 41 ACGAGAAAAACAGCAAGCGCCGCGACCAAGACCCTCCCAGC ACGAGAAAAACAGCAAGCGCCGTGACCAAGACCCTCCCAGC < 41bp 0.759675299827592 0.494460460751907 0.3799219 0.31720334 prediction 0.519350599655183 Functional Loss - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10568618 chr19:10568620 stopgain 0.005 0 23 hm5C_associated_SNPs_62372 0 0 1 0 1 PDE4A chr19:10568555 3'AG 10568555 Downstream 66bp
chrX 154327609 154327609 1 + G T UCEC 154327606 + 154327586 154327626 41 TAAGGTCCCTTCATGGTCCACGAGACTTCTGGAGCTCCAGC TAAGGTCCCTTCATGGTCCACGATACTTCTGGAGCTCCAGC < 41bp 0.759671868792499 0.373898152063221 0.29849464 0.08822465 prediction 0.519343737584998 Functional Loss - BRCC3 ENSG00000185515 CDS Human protein_coding chrX:154327606 chrX:154327609 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_62373 0 0 1 0 2 BRCC3 chrX:154327590 3'AG 154327590 Downstream 20bp
chrX 154327609 154327609 1 + G T UCEC 154327606 + 154327586 154327626 41 TAAGGTCCCTTCATGGTCCACGAGACTTCTGGAGCTCCAGC TAAGGTCCCTTCATGGTCCACGATACTTCTGGAGCTCCAGC < 41bp 0.759671868792499 0.373898152063221 0.29849464 0.08822465 prediction 0.519343737584998 Functional Loss - BRCC3 ENSG00000185515 CDS Human protein_coding chrX:154327606 chrX:154327609 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_62373 0 0 1 0 2 BRCC3 chrX:154327664 5'GT 154327664 Upstream 56bp
chr1 41288008 41288008 1 + C T GBM 41288006 + 41287986 41288026 41 GCTGCCTGGCGCCTGTACTCCACCGATATGAGCCGGGCCTA GCTGCCTGGCGCCTGTACTCCATCGATATGAGCCGGGCCTA < 41bp 0.776186427129694 0.516515430072248 0.1072894 0.117203414 prediction 0.519341994114893 Functional Loss - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41288006 chr1:41288008 nonsynonymous SNV 0.987 5 23 hm5C_associated_SNPs_62374 0 0 0 0 2 KCNQ4 chr1:41287986 3'AG 41287986 Downstream 23bp
chr1 41288008 41288008 1 + C T GBM 41288006 + 41287986 41288026 41 GCTGCCTGGCGCCTGTACTCCACCGATATGAGCCGGGCCTA GCTGCCTGGCGCCTGTACTCCATCGATATGAGCCGGGCCTA < 41bp 0.776186427129694 0.516515430072248 0.1072894 0.117203414 prediction 0.519341994114893 Functional Loss - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41288006 chr1:41288008 nonsynonymous SNV 0.987 5 23 hm5C_associated_SNPs_62374 0 0 0 0 2 KCNQ4 chr1:41288074 5'GT 41288074 Upstream 67bp
chr15 43476511 43476511 1 + G T SARC 43476509 + 43476489 43476529 41 ACATGTGTTGGAGCTTGCTGCAGCGGTGCTTTGGTCACAAC ACATGTGTTGGAGCTTGCTGCATCGGTGCTTTGGTCACAAC < 41bp 0.759649415769352 0.430572362707316 0.44534975 0.12375489 prediction 0.519298831538704 Functional Loss - TMEM62 ENSG00000137842 CDS Human protein_coding chr15:43476509 chr15:43476511 nonsynonymous SNV 0.992 0 23 hm5C_associated_SNPs_62380 0 0 1 0 1 TMEM62 chr15:43476458 3'AG 43476458 Downstream 54bp
chr10 85909883 85909883 1 + C T UCEC 85909881 + 85909861 85909901 41 CTCATCAGAGCTGCATGGTACACAGCTGGCATTGTGGGAGG CTCATCAGAGCTGCATGGTACATAGCTGGCATTGTGGGAGG < 41bp 0.759646560686842 0.491318618861472 0.28579655 0.32676572 prediction 0.519293121373684 Functional Loss - GHITM ENSG00000165678 CDS Human protein_coding chr10:85909881 chr10:85909883 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_62382 0 0 1 0 1 GHITM chr10:85909811 3'AG 85909811 Downstream 73bp
chr19 15734834 15734834 1 + G T UCEC 15734832 + 15734812 15734852 41 GTACAACCTCGCGAGGCACCCAGAATACCAAGAACGCTGCC GTACAACCTCGCGAGGCACCCATAATACCAAGAACGCTGCC < 41bp 0.759642163398416 0.426633088062218 0.9005788 0.3224676 prediction 0.519284326796832 Functional Loss - CYP4F8 ENSG00000186526 ncRNA_exonic Human protein_coding chr19:15734832 chr19:15734834 . 0.754 0 23 hm5C_associated_SNPs_62383 0 0 0 0 2 CYP4F8 chr19:15734775 3'AG 15734775 Downstream 60bp
chr19 15734834 15734834 1 + G T UCEC 15734832 + 15734812 15734852 41 GTACAACCTCGCGAGGCACCCAGAATACCAAGAACGCTGCC GTACAACCTCGCGAGGCACCCATAATACCAAGAACGCTGCC < 41bp 0.759642163398416 0.426633088062218 0.9005788 0.3224676 prediction 0.519284326796832 Functional Loss - CYP4F8 ENSG00000186526 ncRNA_exonic Human protein_coding chr19:15734832 chr19:15734834 . 0.754 0 23 hm5C_associated_SNPs_62383 0 0 0 0 2 CYP4F8 chr19:15734904 5'GT 15734904 Upstream 71bp
chr19 39207810 39207810 1 + G T LUSC 39207807 + 39207787 39207827 41 TCCAGGAGATGCAGCAGAAGCTGGAGGACTTCCGCGACTAC TCCAGGAGATGCAGCAGAAGCTGTAGGACTTCCGCGACTAC < 41bp 0.913360675918304 0.653720466590072 0.89646655 0.39793718 prediction 0.519280418656463 Functional Loss - ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39207807 chr19:39207810 stopgain 1.000 1 24 hm5C_associated_SNPs_62386 0 0 1 0 1 ACTN4 chr19:39207726 3'AG 39207726 Downstream 85bp
chr14 50176462 50176462 1 + C T UCEC 50176460 + 50176440 50176480 41 ATGGAAGGAGAACTCCCAGCCTCCATGTCAGGAAGCTGTGG ATGGAAGGAGAACTCCCAGCCTTCATGTCAGGAAGCTGTGG < 41bp 0.815981027298889 0.556355253360678 0.94634974 0.2018897 prediction 0.519251547876421 Functional Loss - KLHDC1 ENSG00000197776 CDS Human protein_coding chr14:50176460 chr14:50176462 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_62389 0 0 0 0 2 KLHDC1 chr14:50176427 3'AG 50176427 Downstream 36bp
chr14 50176462 50176462 1 + C T UCEC 50176460 + 50176440 50176480 41 ATGGAAGGAGAACTCCCAGCCTCCATGTCAGGAAGCTGTGG ATGGAAGGAGAACTCCCAGCCTTCATGTCAGGAAGCTGTGG < 41bp 0.815981027298889 0.556355253360678 0.94634974 0.2018897 prediction 0.519251547876421 Functional Loss - KLHDC1 ENSG00000197776 CDS Human protein_coding chr14:50176460 chr14:50176462 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_62389 0 0 0 0 2 KLHDC1 chr14:50176544 5'GT 50176544 Upstream 83bp
chr16 72143406 72143406 1 + G C rs111734496 72143402 + 72143382 72143422 41 CGTGAAACAGGCGGGCAAGTCACGGCAGGTGAGGATTCTGT CGTGAAACAGGCGGGCAAGTCACGCCAGGTGAGGATTCTGT < 41bp 0.791918489724074 0.532294654019409 0.7650378 0.7393916 prediction 0.519247671409331 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72143402 chr16:72143406 synonymous SNV . 0 25 hm5C_associated_SNPs_62390 0 0 1 0 2 DHX38 chr16:72143314 3'AG 72143314 Downstream 93bp
chr16 72143406 72143406 1 + G C rs111734496 72143402 + 72143382 72143422 41 CGTGAAACAGGCGGGCAAGTCACGGCAGGTGAGGATTCTGT CGTGAAACAGGCGGGCAAGTCACGCCAGGTGAGGATTCTGT < 41bp 0.791918489724074 0.532294654019409 0.7650378 0.7393916 prediction 0.519247671409331 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72143402 chr16:72143406 synonymous SNV . 0 25 hm5C_associated_SNPs_62390 0 0 1 0 2 DHX38 chr16:72143409 5'GT 72143409 Upstream 4bp
chr19 51827009 51827009 1 + G T LUAD 51827007 + 51826987 51827027 41 ACCGCTGGACCAGCGACCCGCGGGTGCGGCTGCTCATCAAC ACCGCTGGACCAGCGACCCGCGTGTGCGGCTGCTCATCAAC < 41bp 0.759617381717873 0.399218500782321 0.81028885 0.36075062 prediction 0.519234763435746 Functional Loss - IGLON5 ENSG00000142549 CDS Human protein_coding chr19:51827007 chr19:51827009 synonymous SNV . 0 23 hm5C_associated_SNPs_62392 0 0 0 0 1 IGLON5 chr19:51826916 3'AG 51826916 Downstream 94bp
chr22 26838471 26838471 1 + C T UCEC 26838469 + 26838449 26838489 41 AGCTGGTGGTGGGGGGAGAGCCCCAGTGCTGGGCAGAAGGG AGCTGGTGGTGGGGGGAGAGCCTCAGTGCTGGGCAGAAGGG < 41bp 0.759594378707484 0.478273581001564 0.79675597 0.37950867 prediction 0.519188757414969 Functional Loss - ASPHD2 ENSG00000128203 CDS Human protein_coding chr22:26838469 chr22:26838471 synonymous SNV . 0 23 hm5C_associated_SNPs_62394 0 0 0 0 2 ASPHD2 chr22:26838425 3'AG 26838425 Downstream 47bp
chr22 26838471 26838471 1 + C T UCEC 26838469 + 26838449 26838489 41 AGCTGGTGGTGGGGGGAGAGCCCCAGTGCTGGGCAGAAGGG AGCTGGTGGTGGGGGGAGAGCCTCAGTGCTGGGCAGAAGGG < 41bp 0.759594378707484 0.478273581001564 0.79675597 0.37950867 prediction 0.519188757414969 Functional Loss - ASPHD2 ENSG00000128203 CDS Human protein_coding chr22:26838469 chr22:26838471 synonymous SNV . 0 23 hm5C_associated_SNPs_62394 0 0 0 0 2 ASPHD2 chr22:26838538 5'GT 26838538 Upstream 68bp
chr17 41179306 41179306 1 + G T UCEC 41179303 + 41179283 41179323 41 GAAACACTGGACAGTGTTCTCAAGAAGGTGGGAGCCTGGGG GAAACACTGGACAGTGTTCTCAATAAGGTGGGAGCCTGGGG < 41bp 0.908769738549675 0.649179188783145 0.8745147 0.23459077 prediction 0.519181099533059 Functional Loss - RND2 ENSG00000108830 CDS Human protein_coding chr17:41179303 chr17:41179306 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_62395 0 0 0 0 1 RND2 chr17:41179309 5'GT 41179309 Upstream 4bp
chr19 50148305 50148305 1 + C T SKCM 50148303 + 50148283 50148323 41 CATGGAGGAAGAAGATGAGTCTCGAGGGAAGACAGAGGAGT CATGGAGGAAGAAGATGAGTCTTGAGGGAAGACAGAGGAGT < 41bp 0.774118822681886 0.514542671453589 0.5061849 0.46131685 prediction 0.519152302456594 Functional Loss - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50148303 chr19:50148305 stopgain 1.000 0 23 hm5C_associated_SNPs_62396 0 0 1 0 2 SCAF1 chr19:50148278 3'AG 50148278 Downstream 28bp
chr19 50148305 50148305 1 + C T SKCM 50148303 + 50148283 50148323 41 CATGGAGGAAGAAGATGAGTCTCGAGGGAAGACAGAGGAGT CATGGAGGAAGAAGATGAGTCTTGAGGGAAGACAGAGGAGT < 41bp 0.774118822681886 0.514542671453589 0.5061849 0.46131685 prediction 0.519152302456594 Functional Loss - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50148303 chr19:50148305 stopgain 1.000 0 23 hm5C_associated_SNPs_62396 0 0 1 0 2 SCAF1 chr19:50148391 5'GT 50148391 Upstream 87bp
chr3 48421003 48421003 1 + G T UCEC 48421000 + 48420980 48421020 41 CTTCTACACTGCTCTCCTGACAAGAAATGGGTATTTGCATG CTTCTACACTGCTCTCCTGACAATAAATGGGTATTTGCATG < 41bp 0.759564034915096 0.373163782310111 0.25073838 0.07848853 prediction 0.519128069830192 Functional Loss - FBXW12 ENSG00000164049 CDS Human protein_coding chr3:48421000 chr3:48421003 nonsynonymous SNV 0.979 0 24 hm5C_associated_SNPs_62397 0 0 0 0 1 FBXW12 chr3:48421048 5'GT 48421048 Upstream 46bp
chrX 35985763 35985763 1 + C T GBM 35985761 + 35985741 35985781 41 TTGCCTTCGATCCGTAATCCCACGGGAAAGTTTGTGGTCAA TTGCCTTCGATCCGTAATCCCATGGGAAAGTTTGTGGTCAA < 41bp 0.759555178025548 0.490798211897464 0.41099966 0.44248188 prediction 0.519110356051095 Functional Loss - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35985761 chrX:35985763 nonsynonymous SNV 0.000 4 23 hm5C_associated_SNPs_62398 0 0 0 0 1 CFAP47 chrX:35985736 3'AG 35985736 Downstream 28bp
chr17 30362634 30362634 1 + C T STAD 30362632 + 30362612 30362652 41 ACAACACTTAAGAACATTCTCACGATGACTGTTGAACTGGA ACAACACTTAAGAACATTCTCATGATGACTGTTGAACTGGA < 41bp 0.759527168603174 0.482240499165597 0.1897105 0.3080586 prediction 0.519054337206349 Functional Loss - LRRC37B ENSG00000185158 CDS Human protein_coding chr17:30362632 chr17:30362634 nonsynonymous SNV 0.008 0 23 hm5C_associated_SNPs_62404 0 0 1 0 2 LRRC37B chr17:30362584 3'AG 30362584 Downstream 51bp
chr17 30362634 30362634 1 + C T STAD 30362632 + 30362612 30362652 41 ACAACACTTAAGAACATTCTCACGATGACTGTTGAACTGGA ACAACACTTAAGAACATTCTCATGATGACTGTTGAACTGGA < 41bp 0.759527168603174 0.482240499165597 0.1897105 0.3080586 prediction 0.519054337206349 Functional Loss - LRRC37B ENSG00000185158 CDS Human protein_coding chr17:30362632 chr17:30362634 nonsynonymous SNV 0.008 0 23 hm5C_associated_SNPs_62404 0 0 1 0 2 LRRC37B chr17:30362658 5'GT 30362658 Upstream 25bp
chr17 34391718 34391718 1 + G T LUAD 34391716 + 34391696 34391736 41 CAGCATCATGAAGGGCCTTGCAGCTGCCCTCCTTGTCCTCG CAGCATCATGAAGGGCCTTGCATCTGCCCTCCTTGTCCTCG < 41bp 0.759518819183356 0.410653168112447 0.6648945 0.1948036 prediction 0.519037638366711 Functional Loss - CCL18 ENSG00000006074 CDS Human other chr17:34391716 chr17:34391718 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_62405 0 0 0 0 1 CCL18 chr17:34391769 5'GT 34391769 Upstream 52bp
chr10 99416117 99416117 1 + C T BLCA 99416115 + 99416095 99416135 41 GTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAG GTCCAGGGGCAAGCGGCTTGCATTAGAGAAAGTGCCAAAAG < 41bp 0.759501762738582 0.479177208559864 0.10032213 0.099850416 prediction 0.519003525477164 Functional Loss - PI4K2A ENSG00000155252;ENSG00000249967 CDS Human other chr10:99416115 chr10:99416117 synonymous SNV . 0 23 hm5C_associated_SNPs_62408 0 0 0 0 2 PI4K2A chr10:99416042 3'AG 99416042 Downstream 76bp
chr10 99416117 99416117 1 + C T BLCA 99416115 + 99416095 99416135 41 GTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAG GTCCAGGGGCAAGCGGCTTGCATTAGAGAAAGTGCCAAAAG < 41bp 0.759501762738582 0.479177208559864 0.10032213 0.099850416 prediction 0.519003525477164 Functional Loss - PI4K2A ENSG00000155252;ENSG00000249967 CDS Human other chr10:99416115 chr10:99416117 synonymous SNV . 0 23 hm5C_associated_SNPs_62408 0 0 0 0 2 PI4K2A chr10:99416173 5'GT 99416173 Upstream 57bp
chr6 42985916 42985916 1 + G T OV 42985913 + 42985893 42985933 41 TTTCCAATGACATTCACAAGCTAGATACCAGCACCATGACA TTTCCAATGACATTCACAAGCTATATACCAGCACCATGACA < 41bp 0.759488461624197 0.371507065710575 0.13412902 0.19235477 prediction 0.518976923248395 Functional Loss - KLHDC3 ENSG00000124702 CDS Human protein_coding chr6:42985913 chr6:42985916 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_62409 0 0 1 0 2 KLHDC3 chr6:42985883 3'AG 42985883 Downstream 34bp
chr6 42985916 42985916 1 + G T OV 42985913 + 42985893 42985933 41 TTTCCAATGACATTCACAAGCTAGATACCAGCACCATGACA TTTCCAATGACATTCACAAGCTATATACCAGCACCATGACA < 41bp 0.759488461624197 0.371507065710575 0.13412902 0.19235477 prediction 0.518976923248395 Functional Loss - KLHDC3 ENSG00000124702 CDS Human protein_coding chr6:42985913 chr6:42985916 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_62409 0 0 1 0 2 KLHDC3 chr6:42985954 5'GT 42985954 Upstream 39bp
chr11 63978862 63978862 1 + C T BLCA 63978860 + 63978840 63978880 41 CGCCACCCGACCCCCTCCTGCTCCAGCGTCTGCCACGGCCC CGCCACCCGACCCCCTCCTGCTTCAGCGTCTGCCACGGCCC < 41bp 0.808713042894793 0.54923262990469 0.55826616 0.14979535 prediction 0.518960825980205 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63978860 chr11:63978862 synonymous SNV . 0 23 hm5C_associated_SNPs_62412 0 0 1 0 1 FERMT3 chr11:63978915 5'GT 63978915 Upstream 54bp
chr4 128565128 128565128 1 + G T SKCM 128565126 + 128565106 128565146 41 AAGTGGAGCTGGAGAAGAACCGGAAAGCAGGGTGATGGAGA AAGTGGAGCTGGAGAAGAACCGTAAAGCAGGGTGATGGAGA < 41bp 0.873716463740597 0.614243599836608 0.8681313 0.28336442 prediction 0.518945727807977 Functional Loss - INTU ENSG00000164066 CDS Human protein_coding chr4:128565126 chr4:128565128 nonsynonymous SNV 0.062 0 23 hm5C_associated_SNPs_62414 0 0 1 0 1 INTU chr4:128565211 5'GT 128565211 Upstream 84bp
chr7 73609171 73609171 1 + C T CESC 73609169 + 73609149 73609189 41 GCTTCAGAGATGGCCCTCCCCTCCGTGGATCCAACATGGAT GCTTCAGAGATGGCCCTCCCCTTCGTGGATCCAACATGGAT < 41bp 0.802612579859009 0.543165918298871 0.14750695 0.08873588 prediction 0.518893323120277 Functional Loss - EIF4H ENSG00000106682 CDS Human protein_coding chr7:73609169 chr7:73609171 synonymous SNV . 0 23 hm5C_associated_SNPs_62418 0 0 1 0 1 EIF4H chr7:73609208 5'GT 73609208 Upstream 38bp
chr19 14580606 14580606 1 + C T LUSC 14580604 + 14580584 14580624 41 TGCTGGGCCTACAGTTTCTTCACGAACACAAGATCGTCTAC TGCTGGGCCTACAGTTTCTTCATGAACACAAGATCGTCTAC < 41bp 0.792751802199271 0.533324810570873 0.07614043 0.058395654 prediction 0.518853983256795 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580604 chr19:14580606 synonymous SNV . 0 23 hm5C_associated_SNPs_62420 0 0 1 0 2 PKN1 chr19:14580564 3'AG 14580564 Downstream 43bp
chr19 14580606 14580606 1 + C T LUSC 14580604 + 14580584 14580624 41 TGCTGGGCCTACAGTTTCTTCACGAACACAAGATCGTCTAC TGCTGGGCCTACAGTTTCTTCATGAACACAAGATCGTCTAC < 41bp 0.792751802199271 0.533324810570873 0.07614043 0.058395654 prediction 0.518853983256795 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580604 chr19:14580606 synonymous SNV . 0 23 hm5C_associated_SNPs_62420 0 0 1 0 2 PKN1 chr19:14580626 5'GT 14580626 Upstream 21bp
chr14 76452154 76452154 1 + G C ACC 76452153 + 76452133 76452173 41 GAGGATTTGCTCGACTTGGACGAGGAGCTTCGCTACAGCTT GAGGATTTGCTCGACTTGGACCAGGAGCTTCGCTACAGCTT < 41bp 0.759421824164982 0.452485301445797 0.76655316 0.2896101 prediction 0.518843648329963 Functional Loss - IFT43 ENSG00000119650 CDS Human protein_coding chr14:76452153 chr14:76452154 nonsynonymous SNV 0.085 2 22 hm5C_associated_SNPs_62421 0 0 1 0 1 IFT43 chr14:76452183 5'GT 76452183 Upstream 30bp
chr4 48422152 48422152 1 + A T LUAD 48422148 + 48422128 48422168 41 TTGCCATCCCACAGTACCTTCTCCAGGCAAATTCCGTTCCC TTGCCATCCCACAGTACCTTCTCCTGGCAAATTCCGTTCCC < 41bp 0.759420300955504 0.418097129522737 0.9457129 0.06552985 prediction 0.518840601911008 Functional Loss - SLAIN2 ENSG00000109171 CDS Human protein_coding chr4:48422148 chr4:48422152 synonymous SNV . 0 25 hm5C_associated_SNPs_62422 0 0 0 0 1 SLAIN2 chr4:48422142 3'AG 48422142 Downstream 11bp
chr19 15164422 15164422 1 + A C UCEC 15164418 + 15164398 15164438 41 CAGCTGAGATTCGAAAGCACCATGAAAAGAGACCCCACTGC CAGCTGAGATTCGAAAGCACCATGCAAAGAGACCCCACTGC < 41bp 0.759419586476183 0.348066495576804 0.17853153 0.098308116 prediction 0.518839172952366 Functional Loss - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15164418 chr19:15164422 nonsynonymous SNV 0.956 1 25 hm5C_associated_SNPs_62423 0 0 0 0 1 CASP14 chr19:15164442 5'GT 15164442 Upstream 21bp
chr2 26647236 26647236 1 + G T COAD 26647233 + 26647213 26647253 41 GCAAGCAGAAGAGAATTCCCCAAGAGCTGTGGGAAATGCTC GCAAGCAGAAGAGAATTCCCCAATAGCTGTGGGAAATGCTC < 41bp 0.759417612812371 0.367326620773592 0.67455906 0.14892179 prediction 0.518835225624741 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26647233 chr2:26647236 stopgain 0.865 0 24 hm5C_associated_SNPs_62425 0 0 0 0 1 DRC1 chr2:26647139 3'AG 26647139 Downstream 98bp
chr7 139108081 139108081 1 - T G rs191541492 139108085 - 139108065 139108105 41 TACAAACAACCCTGAAGTGGCTGGAATATAGTCAGCAAGGG TACAAACAACCCTGAAGTGGCTGGCATATAGTCAGCAAGGG < 41bp 0.784617738195296 0.525202083115635 0.09172496 0.18304953 prediction 0.518831310159322 Functional Loss - LOC100129148 ENSG00000146963 UTR3 Human protein_coding chr7:139108085 chr7:139108081 . . 0 25 hm5C_associated_SNPs_62426 0 0 0 0 2 LOC100129148 chr7:139108031 5'GT 139108031 Upstream 51bp
chr7 139108081 139108081 1 - T G rs191541492 139108085 - 139108065 139108105 41 TACAAACAACCCTGAAGTGGCTGGAATATAGTCAGCAAGGG TACAAACAACCCTGAAGTGGCTGGCATATAGTCAGCAAGGG < 41bp 0.784617738195296 0.525202083115635 0.09172496 0.18304953 prediction 0.518831310159322 Functional Loss - LOC100129148 ENSG00000146963 UTR3 Human protein_coding chr7:139108085 chr7:139108081 . . 0 25 hm5C_associated_SNPs_62426 0 0 0 0 2 LOC100129148 chr7:139108131 3'AG 139108131 Downstream 51bp
chr8 76472606 76472606 1 + A T LUSC 76472602 + 76472582 76472622 41 CTTCCAATGATGGCAGTCATCTCCATCATCCAATGCATCCA CTTCCAATGATGGCAGTCATCTCCTTCATCCAATGCATCCA < 41bp 0.876783968387805 0.617368820522862 0.9472774 0.07107329 prediction 0.518830295729886 Functional Loss - HNF4G ENSG00000164749 CDS Human protein_coding chr8:76472602 chr8:76472606 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_62427 0 0 0 0 2 HNF4G chr8:76472579 3'AG 76472579 Downstream 28bp
chr8 76472606 76472606 1 + A T LUSC 76472602 + 76472582 76472622 41 CTTCCAATGATGGCAGTCATCTCCATCATCCAATGCATCCA CTTCCAATGATGGCAGTCATCTCCTTCATCCAATGCATCCA < 41bp 0.876783968387805 0.617368820522862 0.9472774 0.07107329 prediction 0.518830295729886 Functional Loss - HNF4G ENSG00000164749 CDS Human protein_coding chr8:76472602 chr8:76472606 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_62427 0 0 0 0 2 HNF4G chr8:76472701 5'GT 76472701 Upstream 96bp
chr12 58016619 58016619 1 + G T LUAD 58016616 + 58016596 58016636 41 TGGCTGAGCTGCCCAGGATTCTGGCTGACTCGCTGCCCATT TGGCTGAGCTGCCCAGGATTCTGTCTGACTCGCTGCCCATT < 41bp 0.759399922265648 0.356651837544062 0.90760493 0.6557188 prediction 0.518799844531295 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58016616 chr12:58016619 nonsynonymous SNV 0.942 1 24 hm5C_associated_SNPs_62430 0 0 0 1 2 SLC26A10 chr12:58016570 3'AG 58016570 Downstream 50bp
chr12 58016619 58016619 1 + G T LUAD 58016616 + 58016596 58016636 41 TGGCTGAGCTGCCCAGGATTCTGGCTGACTCGCTGCCCATT TGGCTGAGCTGCCCAGGATTCTGTCTGACTCGCTGCCCATT < 41bp 0.759399922265648 0.356651837544062 0.90760493 0.6557188 prediction 0.518799844531295 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58016616 chr12:58016619 nonsynonymous SNV 0.942 1 24 hm5C_associated_SNPs_62430 0 0 0 1 2 SLC26A10 chr12:58016717 5'GT 58016717 Upstream 99bp
chr13 37394092 37394092 1 + G T OV 37394089 + 37394069 37394109 41 GCAGCGCGGGAAACGTCAAACTCGAGGTATCAGACTTAGCT GCAGCGCGGGAAACGTCAAACTCTAGGTATCAGACTTAGCT < 41bp 0.893423539081957 0.634027221862037 0.5305466 0.45201808 prediction 0.518792634439839 Functional Loss - RFXAP ENSG00000133111 CDS Human protein_coding chr13:37394089 chr13:37394092 stopgain 0.978 1 24 hm5C_associated_SNPs_62432 0 0 1 0 1 RFXAP chr13:37394094 5'GT 37394094 Upstream 3bp
chr2 219229429 219229429 1 + G T SKCM 219229427 + 219229407 219229447 41 CGTGGAGCAGACTGTCCACGCGGAGGAGGGCATCCCCATGT CGTGGAGCAGACTGTCCACGCGTAGGAGGGCATCCCCATGT < 41bp 0.884327056087306 0.624939941093741 0.88682204 0.153732 prediction 0.518774229987131 Functional Loss - CATIP ENSG00000158428 CDS Human protein_coding chr2:219229427 chr2:219229429 stopgain 0.865 0 23 hm5C_associated_SNPs_62434 0 0 0 0 2 CATIP chr2:219229351 3'AG 219229351 Downstream 79bp
chr2 219229429 219229429 1 + G T SKCM 219229427 + 219229407 219229447 41 CGTGGAGCAGACTGTCCACGCGGAGGAGGGCATCCCCATGT CGTGGAGCAGACTGTCCACGCGTAGGAGGGCATCCCCATGT < 41bp 0.884327056087306 0.624939941093741 0.88682204 0.153732 prediction 0.518774229987131 Functional Loss - CATIP ENSG00000158428 CDS Human protein_coding chr2:219229427 chr2:219229429 stopgain 0.865 0 23 hm5C_associated_SNPs_62434 0 0 0 0 2 CATIP chr2:219229475 5'GT 219229475 Upstream 47bp
chr12 93162793 93162793 1 + C T COAD 93162791 + 93162771 93162811 41 GAAATGCTTTTCTTATACAACACGAAAACAGATATCGACAG GAAATGCTTTTCTTATACAACATGAAAACAGATATCGACAG < 41bp 0.759375289596992 0.486172076731172 0.019360721 0.021843672 prediction 0.518750579193984 Functional Loss - PLEKHG7 ENSG00000187510 CDS Human protein_coding chr12:93162791 chr12:93162793 synonymous SNV . 0 23 hm5C_associated_SNPs_62441 0 0 0 0 2 PLEKHG7 chr12:93162759 3'AG 93162759 Downstream 35bp
chr12 93162793 93162793 1 + C T COAD 93162791 + 93162771 93162811 41 GAAATGCTTTTCTTATACAACACGAAAACAGATATCGACAG GAAATGCTTTTCTTATACAACATGAAAACAGATATCGACAG < 41bp 0.759375289596992 0.486172076731172 0.019360721 0.021843672 prediction 0.518750579193984 Functional Loss - PLEKHG7 ENSG00000187510 CDS Human protein_coding chr12:93162791 chr12:93162793 synonymous SNV . 0 23 hm5C_associated_SNPs_62441 0 0 0 0 2 PLEKHG7 chr12:93162856 5'GT 93162856 Upstream 64bp
chr3 46943342 46943342 1 + G T SARC 46943340 + 46943320 46943360 41 CCGGCCGGTGTGACACACGGCAGCAGTACCGGTGAGCCCAC CCGGCCGGTGTGACACACGGCATCAGTACCGGTGAGCCCAC < 41bp 0.885574037180478 0.626200642363907 0.3242713 0.09249899 prediction 0.518746789633142 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46943340 chr3:46943342 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_62442 0 0 0 0 2 PTH1R chr3:46943256 3'AG 46943256 Downstream 87bp
chr3 46943342 46943342 1 + G T SARC 46943340 + 46943320 46943360 41 CCGGCCGGTGTGACACACGGCAGCAGTACCGGTGAGCCCAC CCGGCCGGTGTGACACACGGCATCAGTACCGGTGAGCCCAC < 41bp 0.885574037180478 0.626200642363907 0.3242713 0.09249899 prediction 0.518746789633142 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46943340 chr3:46943342 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_62442 0 0 0 0 2 PTH1R chr3:46943350 5'GT 46943350 Upstream 9bp
chr8 70515465 70515465 1 + C T ESCA 70515463 + 70515443 70515483 41 CTCAACATTGACTTGGCCCCCACGATCCTGGATATTGCTGG CTCAACATTGACTTGGCCCCCATGATCCTGGATATTGCTGG < 41bp 0.79751513857467 0.538144038748896 0.05558759 0.0452649 prediction 0.518742199651547 Functional Loss - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70515463 chr8:70515465 nonsynonymous SNV 0.987 5 23 hm5C_associated_SNPs_62443 0 0 0 0 1 SULF1 chr8:70515555 5'GT 70515555 Upstream 91bp
chr5 67591077 67591077 1 + G C CESC 67591076 + 67591056 67591096 41 AGAAGCAGGCAGCTGAGTATCGAGAAATTGACAAACGTATG AGAAGCAGGCAGCTGAGTATCCAGAAATTGACAAACGTATG < 41bp 0.810885634158216 0.551517468813243 0.644149 0.15050566 prediction 0.518736330689946 Functional Loss - PIK3R1 ENSG00000145675 CDS Human protein_coding chr5:67591076 chr5:67591077 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_62445 0 0 0 0 1 PIK3R1 chr5:67591152 5'GT 67591152 Upstream 76bp
chr6 170176580 170176580 1 + G T UCEC 170176578 + 170176558 170176598 41 CAGCTTCTCCGTGAGCTCTGCAGCACACCTGTTCCCACCCT CAGCTTCTCCGTGAGCTCTGCATCACACCTGTTCCCACCCT < 41bp 0.75936460354003 0.411036993946578 0.20123065 0.08080506 prediction 0.518729207080061 Functional Loss - ERMARD ENSG00000130023 CDS Human protein_coding chr6:170176578 chr6:170176580 nonsynonymous SNV 0.017 0 23 hm5C_associated_SNPs_62446 0 0 0 0 1 ERMARD chr6:170176551 3'AG 170176551 Downstream 30bp
chr5 139175480 139175480 1 + G T rs184780274 139175478 + 139175458 139175498 41 GCGCGGGCAGCTCCGACCGGCGGCGGCGGGGCGGGACAGGC GCGCGGGCAGCTCCGACCGGCGTCGGCGGGGCGGGACAGGC < 41bp 0.858680104885697 0.599316340294793 0.90641665 0.8898467 prediction 0.518727529181807 Functional Loss - PSD2 ENSG00000146005 UTR5 Human protein_coding chr5:139175478 chr5:139175480 . . 0 23 hm5C_associated_SNPs_62448 0 0 0 0 1 PSD2 chr5:139175560 5'GT 139175560 Upstream 81bp
chr9 12695801 12695801 1 + C T rs147425437 12695799 + 12695779 12695819 41 GACCAGCTTTTCTCACATGGCACAGGTACCACCTCCTGCGT GACCAGCTTTTCTCACATGGCATAGGTACCACCTCCTGCGT < 41bp 0.759357788148039 0.496489749668438 0.115927964 0.10008255 prediction 0.518715576296078 Functional Loss - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12695799 chr9:12695801 stopgain 0.996 0 23 hm5C_associated_SNPs_62449 0 0 0 0 1 TYRP1 chr9:12695837 5'GT 12695837 Upstream 37bp
chr6 16143302 16143302 1 + A C GBM 16143298 + 16143278 16143318 41 GGGGACCAGCCAGGCTTCAGCTGAATACCAAGTTTTGCAGA GGGGACCAGCCAGGCTTCAGCTGACTACCAAGTTTTGCAGA < 41bp 0.759355276194349 0.34111379666582 0.4416155 0.42621163 prediction 0.518710552388699 Functional Loss - MYLIP ENSG00000007944 CDS Human protein_coding chr6:16143298 chr6:16143302 nonsynonymous SNV 0.980 4 25 hm5C_associated_SNPs_62450 0 0 1 0 1 MYLIP chr6:16143251 3'AG 16143251 Downstream 52bp
chr20 19870272 19870272 1 + C T UCEC 19870270 + 19870250 19870290 41 CAGCTTGGACCATGGGCGCCCGCGGTCTGGACAAGCGAGGA CAGCTTGGACCATGGGCGCCCGTGGTCTGGACAAGCGAGGA < 41bp 0.773602368987937 0.514251516455167 0.18469322 0.21196797 prediction 0.518701705065541 Functional Loss - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19870270 chr20:19870272 synonymous SNV . 0 23 hm5C_associated_SNPs_62452 0 0 1 0 1 RIN2 chr20:19870302 5'GT 19870302 Upstream 31bp
chr12 113440753 113440753 1 + C T LUSC 113440751 + 113440731 113440771 41 CCCCAGCCTGCACCACTCTTCACGACCCCAGGCCACCTTCT CCCCAGCCTGCACCACTCTTCATGACCCCAGGCCACCTTCT < 41bp 0.781343632075025 0.521996429000526 0.080485374 0.022937298 prediction 0.518694406148999 Functional Loss - OAS2 ENSG00000111335 CDS Human protein_coding chr12:113440751 chr12:113440753 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_62453 0 0 0 0 1 OAS2 chr12:113440737 3'AG 113440737 Downstream 17bp
chr19 14676048 14676048 1 + G T UCEC 14676045 + 14676025 14676065 41 CGGAAGATCCCATACCCCACCAAGAACCCCTTCACGTGGCT CGGAAGATCCCATACCCCACCAATAACCCCTTCACGTGGCT < 41bp 0.759321355663717 0.364092782113958 0.12054849 0.037350804 prediction 0.518642711327434 Functional Loss - TECR ENSG00000099797 CDS Human protein_coding chr19:14676045 chr19:14676048 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_62456 0 0 0 0 1 TECR chr19:14676102 5'GT 14676102 Upstream 55bp
chr1 152732105 152732105 1 + A C rs113343037 152732101 + 152732081 152732121 41 AGATCCAGTGCCGCCTGCCGCTCCAACAGTGCTGCGTCAAG AGATCCAGTGCCGCCTGCCGCTCCCACAGTGCTGCGTCAAG < 41bp 0.759320466981136 0.337041787037623 0.941911 0.0883674 prediction 0.518640933962271 Functional Loss - KPRP ENSG00000203786 CDS Human protein_coding chr1:152732101 chr1:152732105 nonsynonymous SNV 0.231 0 25 hm5C_associated_SNPs_62457 0 0 0 0 1 KPRP chr1:152732037 3'AG 152732037 Downstream 69bp
chr2 88474290 88474290 1 + G T BLCA 88474288 + 88474268 88474308 41 TTTAAGGACCTGTCCCTGTCCTGCACAACACAGTTCCTGCA TTTAAGGACCTGTCCCTGTCCTTCACAACACAGTTCCTGCA < 41bp 0.759314954904957 0.434016289547423 0.08792713 0.06036511 prediction 0.518629909809914 Functional Loss - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88474288 chr2:88474290 nonsynonymous SNV 0.979 1 23 hm5C_associated_SNPs_62458 0 0 0 1 1 THNSL2 chr2:88474352 5'GT 88474352 Upstream 63bp
chr4 187192871 187192871 1 + G T UCEC 187192868 + 187192848 187192888 41 GGTAGTCTGCACTTACCACCCAAGATGTTTACTCTTCACTT GGTAGTCTGCACTTACCACCCAATATGTTTACTCTTCACTT < 41bp 0.910902391943732 0.651598582065363 0.6658251 0.103767246 prediction 0.518607619756738 Functional Loss - F11 ENSG00000088926 CDS Human protein_coding chr4:187192868 chr4:187192871 nonsynonymous SNV 0.003 3 24 hm5C_associated_SNPs_62459 0 0 0 0 1 F11 chr4:187192925 5'GT 187192925 Upstream 55bp
chr19 39395717 39395717 1 + C T CESC 39395715 + 39395695 39395735 41 CTGGATTTTCTTCTAGGCTTCTCGGCCGGCACTGAGTACAT CTGGATTTTCTTCTAGGCTTCTTGGCCGGCACTGAGTACAT < 41bp 0.759276158190116 0.488505150922027 0.1974369 0.12405753 prediction 0.518552316380231 Functional Loss - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39395715 chr19:39395717 nonsynonymous SNV 0.437 0 23 hm5C_associated_SNPs_62466 0 0 1 0 3 NFKBIB chr19:39395655 3'AG 39395655 Downstream 63bp
chr19 39395717 39395717 1 + C T CESC 39395715 + 39395695 39395735 41 CTGGATTTTCTTCTAGGCTTCTCGGCCGGCACTGAGTACAT CTGGATTTTCTTCTAGGCTTCTTGGCCGGCACTGAGTACAT < 41bp 0.759276158190116 0.488505150922027 0.1974369 0.12405753 prediction 0.518552316380231 Functional Loss - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39395715 chr19:39395717 nonsynonymous SNV 0.437 0 23 hm5C_associated_SNPs_62466 0 0 1 0 3 NFKBIB chr19:39395711 3'AG 39395711 Downstream 7bp
chr19 39395717 39395717 1 + C T CESC 39395715 + 39395695 39395735 41 CTGGATTTTCTTCTAGGCTTCTCGGCCGGCACTGAGTACAT CTGGATTTTCTTCTAGGCTTCTTGGCCGGCACTGAGTACAT < 41bp 0.759276158190116 0.488505150922027 0.1974369 0.12405753 prediction 0.518552316380231 Functional Loss - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39395715 chr19:39395717 nonsynonymous SNV 0.437 0 23 hm5C_associated_SNPs_62466 0 0 1 0 3 NFKBIB chr19:39395760 5'GT 39395760 Upstream 44bp
chr9 133488373 133488373 1 + G T LUSC 133488370 + 133488350 133488390 41 CAGGGGAGGTGAGCAGATTTCACGGATTCAAGCAGAATCTG CAGGGGAGGTGAGCAGATTTCACTGATTCAAGCAGAATCTG < 41bp 0.909085012521232 0.649815260131658 0.8129134 0.4542043 prediction 0.518539504779148 Functional Loss - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133488370 chr9:133488373 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_62468 0 0 1 0 2 FUBP3 chr9:133488343 3'AG 133488343 Downstream 31bp
chr9 133488373 133488373 1 + G T LUSC 133488370 + 133488350 133488390 41 CAGGGGAGGTGAGCAGATTTCACGGATTCAAGCAGAATCTG CAGGGGAGGTGAGCAGATTTCACTGATTCAAGCAGAATCTG < 41bp 0.909085012521232 0.649815260131658 0.8129134 0.4542043 prediction 0.518539504779148 Functional Loss - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133488370 chr9:133488373 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_62468 0 0 1 0 2 FUBP3 chr9:133488414 5'GT 133488414 Upstream 42bp
chr8 99006736 99006736 1 + C T rs11559202 99006734 + 99006714 99006754 41 ACTACTGTGCCTCATCTAATCACGGATGTCAGCACGAGTGT ACTACTGTGCCTCATCTAATCATGGATGTCAGCACGAGTGT < 41bp 0.759267563630376 0.493993245036069 0.88167405 0.8328122 prediction 0.518535127260753 Functional Loss - MATN2 ENSG00000132561 CDS Human protein_coding chr8:99006734 chr8:99006736 synonymous SNV . 0 23 hm5C_associated_SNPs_62469 0 0 0 0 2 MATN2 chr8:99006708 3'AG 99006708 Downstream 29bp
chr8 99006736 99006736 1 + C T rs11559202 99006734 + 99006714 99006754 41 ACTACTGTGCCTCATCTAATCACGGATGTCAGCACGAGTGT ACTACTGTGCCTCATCTAATCATGGATGTCAGCACGAGTGT < 41bp 0.759267563630376 0.493993245036069 0.88167405 0.8328122 prediction 0.518535127260753 Functional Loss - MATN2 ENSG00000132561 CDS Human protein_coding chr8:99006734 chr8:99006736 synonymous SNV . 0 23 hm5C_associated_SNPs_62469 0 0 0 0 2 MATN2 chr8:99006830 5'GT 99006830 Upstream 95bp
chr2 95952241 95952241 1 + G T LUAD 95952239 + 95952219 95952259 41 CCTTTCAGGACAATTCTGTGCTGGGGCAGCGGCTGCAGGAG CCTTTCAGGACAATTCTGTGCTTGGGCAGCGGCTGCAGGAG < 41bp 0.759250642750542 0.406826990332575 0.52327865 0.25790364 prediction 0.518501285501085 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95952239 chr2:95952241 synonymous SNV . 0 23 hm5C_associated_SNPs_62470 0 0 0 0 2 PROM2 chr2:95952227 3'AG 95952227 Downstream 15bp
chr2 95952241 95952241 1 + G T LUAD 95952239 + 95952219 95952259 41 CCTTTCAGGACAATTCTGTGCTGGGGCAGCGGCTGCAGGAG CCTTTCAGGACAATTCTGTGCTTGGGCAGCGGCTGCAGGAG < 41bp 0.759250642750542 0.406826990332575 0.52327865 0.25790364 prediction 0.518501285501085 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95952239 chr2:95952241 synonymous SNV . 0 23 hm5C_associated_SNPs_62470 0 0 0 0 2 PROM2 chr2:95952319 5'GT 95952319 Upstream 79bp
chr15 32323151 32323151 1 + A T UCEC 32323147 + 32323127 32323167 41 AAGCTTTACAAGGAGCTGGTCAAGAACTACAATCCCTTGGA AAGCTTTACAAGGAGCTGGTCAAGTACTACAATCCCTTGGA < 41bp 0.759246472994597 0.457738272433609 0.38698635 0.53030616 prediction 0.518492945989194 Functional Loss - CHRNA7 ENSG00000175344 CDS Human protein_coding chr15:32323147 chr15:32323151 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_62471 0 0 0 0 1 CHRNA7 chr15:32323240 5'GT 32323240 Upstream 90bp
chr11 120702643 120702643 1 + G T LUAD 120702640 + 120702620 120702660 41 GTCCGCATGCTGGATGACACCCGGGACCCCACCCCGCTCCT GTCCGCATGCTGGATGACACCCGTGACCCCACCCCGCTCCT < 41bp 0.759245558849396 0.376058176837002 0.9395313 0.30793622 prediction 0.518491117698792 Functional Loss - GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120702640 chr11:120702643 synonymous SNV . 0 24 hm5C_associated_SNPs_62472 0 0 0 0 2 GRIK4 chr11:120702561 3'AG 120702561 Downstream 83bp
chr11 120702643 120702643 1 + G T LUAD 120702640 + 120702620 120702660 41 GTCCGCATGCTGGATGACACCCGGGACCCCACCCCGCTCCT GTCCGCATGCTGGATGACACCCGTGACCCCACCCCGCTCCT < 41bp 0.759245558849396 0.376058176837002 0.9395313 0.30793622 prediction 0.518491117698792 Functional Loss - GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120702640 chr11:120702643 synonymous SNV . 0 24 hm5C_associated_SNPs_62472 0 0 0 0 2 GRIK4 chr11:120702739 5'GT 120702739 Upstream 97bp
chr1 178427624 178427624 1 + C T SKCM 178427622 + 178427602 178427642 41 TCCCGGCAGCAGTCCTCTTCCTCCAGAGAGAGCCCTGTTCC TCCCGGCAGCAGTCCTCTTCCTTCAGAGAGAGCCCTGTTCC < 41bp 0.817987505686716 0.558742470729132 0.92953885 0.23220235 prediction 0.518490069915167 Functional Loss - RASAL2 ENSG00000075391 CDS Human protein_coding chr1:178427622 chr1:178427624 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_62473 0 0 0 0 1 RASAL2 chr1:178427679 5'GT 178427679 Upstream 56bp
chr16 67644819 67644819 1 + C T SKCM 67644817 + 67644797 67644837 41 AGAGAAAGACTTACCAGAGACGCCGGGAAGGGGGCCAGGAA AGAGAAAGACTTACCAGAGACGTCGGGAAGGGGGCCAGGAA < 41bp 0.759233792528998 0.486862690180658 0.3436951 0.3871448 prediction 0.518467585057995 Functional Loss - CTCF ENSG00000102974 CDS Human protein_coding chr16:67644817 chr16:67644819 synonymous SNV . 0 23 hm5C_associated_SNPs_62474 0 0 1 0 1 CTCF chr16:67644727 3'AG 67644727 Downstream 93bp
chr16 28993318 28993318 1 + C T STAD 28993316 + 28993296 28993336 41 CGGCATTCCTGCTGCGTTCCCGCGTGGTCCTTGGGGAGACC CGGCATTCCTGCTGCGTTCCCGTGTGGTCCTTGGGGAGACC < 41bp 0.759720034025159 0.500487589435587 0.65736836 0.38164586 prediction 0.518464889179143 Functional Loss - SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28993316 chr16:28993318 synonymous SNV . 0 23 hm5C_associated_SNPs_62475 0 0 1 0 2 SPNS1 chr16:28993222 3'AG 28993222 Downstream 97bp
chr16 28993318 28993318 1 + C T STAD 28993316 + 28993296 28993336 41 CGGCATTCCTGCTGCGTTCCCGCGTGGTCCTTGGGGAGACC CGGCATTCCTGCTGCGTTCCCGTGTGGTCCTTGGGGAGACC < 41bp 0.759720034025159 0.500487589435587 0.65736836 0.38164586 prediction 0.518464889179143 Functional Loss - SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28993316 chr16:28993318 synonymous SNV . 0 23 hm5C_associated_SNPs_62475 0 0 1 0 2 SPNS1 chr16:28993377 5'GT 28993377 Upstream 60bp
chr11 64329764 64329764 1 + G T LUAD 64329761 + 64329741 64329781 41 GTGGAGTGGACCACGACCAGCAGGAGGGCGGTCACCATGAC GTGGAGTGGACCACGACCAGCAGTAGGGCGGTCACCATGAC < 41bp 0.914595896915647 0.655364452176913 0.8644309 0.682565 prediction 0.518462889477467 Functional Loss - SLC22A11 ENSG00000168065 CDS Human protein_coding chr11:64329761 chr11:64329764 nonsynonymous SNV 0.029 0 24 hm5C_associated_SNPs_62477 0 0 0 0 1 SLC22A11 chr11:64329739 3'AG 64329739 Downstream 26bp
chr3 193336694 193336694 1 - G A LUAD 193336696 - 193336676 193336716 41 ATGCTTGTCACTTTCAGATCCACGATCTGTTGCTCTAAACG ATGCTTGTCACTTTCAGATCCATGATCTGTTGCTCTAAACG < 41bp 0.759227616807726 0.499001205637236 0.02776748 0.054326773 prediction 0.518455233615452 Functional Loss - OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336696 chr3:193336694 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_62479 0 0 0 0 1 OPA1 chr3:193336699 3'AG 193336699 Downstream 6bp
chr20 24565546 24565546 1 + C T PRAD 24565544 + 24565524 24565564 41 CAATTTCCTCATGATGCCCCCGCGGGACCACCTGGGCCTCA CAATTTCCTCATGATGCCCCCGTGGGACCACCTGGGCCTCA < 41bp 0.760394185318513 0.501173218623588 0.1001302 0.04257679 prediction 0.51844193338985 Functional Loss - SYNDIG1 ENSG00000101463 CDS Human protein_coding chr20:24565544 chr20:24565546 nonsynonymous SNV 0.779 5 23 hm5C_associated_SNPs_62480 0 0 0 0 2 SYNDIG1 chr20:24565492 3'AG 24565492 Downstream 55bp
chr20 24565546 24565546 1 + C T PRAD 24565544 + 24565524 24565564 41 CAATTTCCTCATGATGCCCCCGCGGGACCACCTGGGCCTCA CAATTTCCTCATGATGCCCCCGTGGGACCACCTGGGCCTCA < 41bp 0.760394185318513 0.501173218623588 0.1001302 0.04257679 prediction 0.51844193338985 Functional Loss - SYNDIG1 ENSG00000101463 CDS Human protein_coding chr20:24565544 chr20:24565546 nonsynonymous SNV 0.779 5 23 hm5C_associated_SNPs_62480 0 0 0 0 2 SYNDIG1 chr20:24565629 5'GT 24565629 Upstream 84bp
chr5 75581106 75581106 1 + C T UCEC 75581104 + 75581084 75581124 41 CACATTCATGCCTGAAAGCCCACGATTCTTGTTGGAGGTAA CACATTCATGCCTGAAAGCCCATGATTCTTGTTGGAGGTAA < 41bp 0.759213238910742 0.491828685844364 0.0841082 0.26180637 prediction 0.518426477821483 Functional Loss - SV2C ENSG00000122012 CDS Human protein_coding chr5:75581104 chr5:75581106 stopgain 0.998 1 23 hm5C_associated_SNPs_62481 0 0 0 0 1 SV2C chr5:75581120 5'GT 75581120 Upstream 15bp
chr8 11406606 11406606 1 + C T SKCM 11406604 + 11406584 11406624 41 TGTGCCCAGTAACTTTGTGGCCCGAGTGGAGAGCCTGGAAA TGTGCCCAGTAACTTTGTGGCCTGAGTGGAGAGCCTGGAAA < 41bp 0.759201820588277 0.485373345831668 0.23184669 0.34379947 prediction 0.518403641176554 Functional Loss - BLK ENSG00000136573 CDS Human protein_coding chr8:11406604 chr8:11406606 stopgain 0.984 0 23 hm5C_associated_SNPs_62483 0 0 0 0 2 BLK chr8:11406533 3'AG 11406533 Downstream 74bp
chr8 11406606 11406606 1 + C T SKCM 11406604 + 11406584 11406624 41 TGTGCCCAGTAACTTTGTGGCCCGAGTGGAGAGCCTGGAAA TGTGCCCAGTAACTTTGTGGCCTGAGTGGAGAGCCTGGAAA < 41bp 0.759201820588277 0.485373345831668 0.23184669 0.34379947 prediction 0.518403641176554 Functional Loss - BLK ENSG00000136573 CDS Human protein_coding chr8:11406604 chr8:11406606 stopgain 0.984 0 23 hm5C_associated_SNPs_62483 0 0 0 0 2 BLK chr8:11406631 5'GT 11406631 Upstream 26bp
chr14 39790183 39790183 1 + G T HNSC 39790180 + 39790160 39790200 41 GGGTTGGCCTTCATCTGAAACAAGAGCTTTTCTCTCTCCTC GGGTTGGCCTTCATCTGAAACAATAGCTTTTCTCTCTCCTC < 41bp 0.759192427888022 0.391637956815505 0.6514123 0.17580771 prediction 0.518384855776044 Functional Loss - MIA2 ENSG00000150527;ENSG00000258941 CDS Human other chr14:39790180 chr14:39790183 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_62485 0 0 0 0 2 MIA2 chr14:39790132 3'AG 39790132 Downstream 52bp
chr14 39790183 39790183 1 + G T HNSC 39790180 + 39790160 39790200 41 GGGTTGGCCTTCATCTGAAACAAGAGCTTTTCTCTCTCCTC GGGTTGGCCTTCATCTGAAACAATAGCTTTTCTCTCTCCTC < 41bp 0.759192427888022 0.391637956815505 0.6514123 0.17580771 prediction 0.518384855776044 Functional Loss - MIA2 ENSG00000150527;ENSG00000258941 CDS Human other chr14:39790180 chr14:39790183 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_62485 0 0 0 0 2 MIA2 chr14:39790260 5'GT 39790260 Upstream 78bp
chr17 1945928 1945928 1 + G T UCEC 1945925 + 1945905 1945945 41 GCCCTCCGGAGGAGCAGCCTCGAGGCTGGTGGTTTTCAGAG GCCCTCCGGAGGAGCAGCCTCGATGCTGGTGGTTTTCAGAG < 41bp 0.909936868397129 0.650747590106216 0.9338734 0.89330316 prediction 0.518378556581825 Functional Loss - OVCA2 ENSG00000262664 CDS Human protein_coding chr17:1945925 chr17:1945928 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_62486 0 0 1 0 1 OVCA2 chr17:1945899 3'AG 1945899 Downstream 30bp
chr16 67683380 67683380 1 + C T BLCA 67683378 + 67683358 67683398 41 GTCTCTGTCGGTGGCTGAGTCTCGGCTGAAGCTGGGTGCCA GTCTCTGTCGGTGGCTGAGTCTTGGCTGAAGCTGGGTGCCA < 41bp 0.783254495477672 0.524065606663479 0.7476501 0.5410979 prediction 0.518377777628386 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67683378 chr16:67683380 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_62487 0 0 0 0 1 CARMIL2 chr16:67683350 3'AG 67683350 Downstream 31bp
chr1 158815459 158815459 1 + A T BLCA 158815455 + 158815435 158815475 41 ACCCAGTGACAGTGGTGGTACTGAAAGCAACAGCGCCATTT ACCCAGTGACAGTGGTGGTACTGATAGCAACAGCGCCATTT < 41bp 0.850241625646338 0.591065585058728 0.11289564 0.08944991 prediction 0.51835208117522 Functional Loss - MNDA ENSG00000163563 CDS Human protein_coding chr1:158815455 chr1:158815459 nonsynonymous SNV 0.015 3 25 hm5C_associated_SNPs_62489 0 0 0 0 1 MNDA chr1:158815377 3'AG 158815377 Downstream 83bp
chr17 58013600 58013600 1 + C T STAD 58013598 + 58013578 58013618 41 GCTGAAAAGAAATGCTGCTTCTCGTCTGGGAGCTGGTCCTG GCTGAAAAGAAATGCTGCTTCTTGTCTGGGAGCTGGTCCTG < 41bp 0.809337188506184 0.55016785503165 0.13938627 0.09387964 prediction 0.518338666949067 Functional Loss - RPS6KB1 ENSG00000108443 CDS Human protein_coding chr17:58013598 chr17:58013600 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_62490 0 0 1 0 2 RPS6KB1 chr17:58013576 3'AG 58013576 Downstream 25bp
chr17 58013600 58013600 1 + C T STAD 58013598 + 58013578 58013618 41 GCTGAAAAGAAATGCTGCTTCTCGTCTGGGAGCTGGTCCTG GCTGAAAAGAAATGCTGCTTCTTGTCTGGGAGCTGGTCCTG < 41bp 0.809337188506184 0.55016785503165 0.13938627 0.09387964 prediction 0.518338666949067 Functional Loss - RPS6KB1 ENSG00000108443 CDS Human protein_coding chr17:58013598 chr17:58013600 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_62490 0 0 1 0 2 RPS6KB1 chr17:58013638 5'GT 58013638 Upstream 39bp
chr6 30114911 30114911 1 + G T LUAD 30114908 + 30114888 30114928 41 GCCAGAATCCTTGACATCTCCAGGGCAGTAACACAGCTCAG GCCAGAATCCTTGACATCTCCAGTGCAGTAACACAGCTCAG < 41bp 0.759162210580735 0.412761569486896 0.9005703 0.07749307 prediction 0.51832442116147 Functional Loss - TRIM40 ENSG00000204614 CDS Human protein_coding chr6:30114908 chr6:30114911 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_62491 0 0 0 0 2 TRIM40 chr6:30114849 3'AG 30114849 Downstream 63bp
chr6 30114911 30114911 1 + G T LUAD 30114908 + 30114888 30114928 41 GCCAGAATCCTTGACATCTCCAGGGCAGTAACACAGCTCAG GCCAGAATCCTTGACATCTCCAGTGCAGTAACACAGCTCAG < 41bp 0.759162210580735 0.412761569486896 0.9005703 0.07749307 prediction 0.51832442116147 Functional Loss - TRIM40 ENSG00000204614 CDS Human protein_coding chr6:30114908 chr6:30114911 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_62491 0 0 0 0 2 TRIM40 chr6:30114986 5'GT 30114986 Upstream 76bp
chr12 52369077 52369077 1 + C T UCEC 52369075 + 52369055 52369095 41 TGTGTGCGTGCACCAGCTGCCTCCAGGCCAACTACACGTGT TGTGTGCGTGCACCAGCTGCCTTCAGGCCAACTACACGTGT < 41bp 0.821784389312863 0.562627859008029 0.934384 0.5253122 prediction 0.518313060609668 Functional Loss - ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52369075 chr12:52369077 synonymous SNV . 0 23 hm5C_associated_SNPs_62492 0 0 1 0 1 ACVR1B chr12:52369049 3'AG 52369049 Downstream 29bp
chr2 139316692 139316692 1 + G T SKCM 139316690 + 139316670 139316710 41 GCAGAAGATTTAGGTAATCTCTGGGAAAACACAAGATTTAC GCAGAAGATTTAGGTAATCTCTTGGAAAACACAAGATTTAC < 41bp 0.856785443318367 0.597641538409852 0.35897046 0.18471637 prediction 0.518287809817029 Functional Loss - SPOPL ENSG00000144228 CDS Human protein_coding chr2:139316690 chr2:139316692 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_62494 0 0 1 0 1 SPOPL chr2:139316769 5'GT 139316769 Upstream 78bp
chr5 148577899 148577899 1 + C T UCEC 148577897 + 148577877 148577917 41 GACAGCTGCCGGGACTTCATCACAGGCGAAGTCATCTCGGC GACAGCTGCCGGGACTTCATCATAGGCGAAGTCATCTCGGC < 41bp 0.77684876142127 0.517706024755904 0.9201037 0.9032755 prediction 0.518285473330733 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148577897 chr5:148577899 nonsynonymous SNV 0.962 5 23 hm5C_associated_SNPs_62496 0 0 0 0 1 ABLIM3 chr5:148577965 5'GT 148577965 Upstream 67bp
chr10 94835632 94835632 1 + C T COAD 94835630 + 94835610 94835650 41 CTCTTTGGAGGACACGAAACCACGGCCAGTGCAGCCACATC CTCTTTGGAGGACACGAAACCATGGCCAGTGCAGCCACATC < 41bp 0.759115053997613 0.490616096948585 0.3871947 0.31864792 prediction 0.518230107995226 Functional Loss - CYP26A1 ENSG00000095596 CDS Human protein_coding chr10:94835630 chr10:94835632 nonsynonymous SNV 0.961 4 23 hm5C_associated_SNPs_62497 0 0 0 0 2 CYP26A1 chr10:94835583 3'AG 94835583 Downstream 50bp
chr10 94835632 94835632 1 + C T COAD 94835630 + 94835610 94835650 41 CTCTTTGGAGGACACGAAACCACGGCCAGTGCAGCCACATC CTCTTTGGAGGACACGAAACCATGGCCAGTGCAGCCACATC < 41bp 0.759115053997613 0.490616096948585 0.3871947 0.31864792 prediction 0.518230107995226 Functional Loss - CYP26A1 ENSG00000095596 CDS Human protein_coding chr10:94835630 chr10:94835632 nonsynonymous SNV 0.961 4 23 hm5C_associated_SNPs_62497 0 0 0 0 2 CYP26A1 chr10:94835717 5'GT 94835717 Upstream 86bp
chr1 78383348 78383348 1 + G T OV 78383346 + 78383326 78383366 41 TTTGAAGCCATGCAGAGAGCCAGGGAAGAAAGAAATCAAAG TTTGAAGCCATGCAGAGAGCCATGGAAGAAAGAAATCAAAG < 41bp 0.759106555625894 0.436472018273197 0.8365482 0.403961 prediction 0.518213111251788 Functional Loss - NEXN ENSG00000162614 CDS Human protein_coding chr1:78383346 chr1:78383348 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_62500 0 0 0 0 2 NEXN chr1:78383251 3'AG 78383251 Downstream 98bp
chr1 78383348 78383348 1 + G T OV 78383346 + 78383326 78383366 41 TTTGAAGCCATGCAGAGAGCCAGGGAAGAAAGAAATCAAAG TTTGAAGCCATGCAGAGAGCCATGGAAGAAAGAAATCAAAG < 41bp 0.759106555625894 0.436472018273197 0.8365482 0.403961 prediction 0.518213111251788 Functional Loss - NEXN ENSG00000162614 CDS Human protein_coding chr1:78383346 chr1:78383348 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_62500 0 0 0 0 2 NEXN chr1:78383442 5'GT 78383442 Upstream 95bp
chr2 74074811 74074811 1 + G T BLCA 74074809 + 74074789 74074829 41 GCCTTCAGACTGTCACACAACTGTAAGGCCAGCTAAGCCAC GCCTTCAGACTGTCACACAACTTTAAGGCCAGCTAAGCCAC < 41bp 0.759095329590841 0.425982801181499 0.14153245 0.1114831 prediction 0.518190659181683 Functional Loss - STAMBP ENSG00000124356 CDS Human protein_coding chr2:74074809 chr2:74074811 nonsynonymous SNV 0.805 0 23 hm5C_associated_SNPs_62503 0 0 1 0 1 STAMBP chr2:74074880 5'GT 74074880 Upstream 70bp
chr6 3155141 3155141 1 - C G rs188542181 3155145 - 3155125 3155165 41 TCTGGCAGGCCAGAGTGGAGCCGGGAATAACTGGGCCAAGG TCTGGCAGGCCAGAGTGGAGCCGGCAATAACTGGGCCAAGG < 41bp 0.759081485604453 0.470727234202683 0.9213706 0.8997958 prediction 0.518162971208907 Functional Loss - TUBB2A ENSG00000137267 CDS Human protein_coding chr6:3155145 chr6:3155141 synonymous SNV . 0 25 hm5C_associated_SNPs_62504 0 0 1 0 1 TUBB2A chr6:3155157 3'AG 3155157 Downstream 17bp
chr19 41442157 41442157 1 + G T UCEC 41442155 + 41442135 41442175 41 TCATCATGGACCCAGTCTACCAGGGATATGGTGAGGGCTTC TCATCATGGACCCAGTCTACCATGGATATGGTGAGGGCTTC < 41bp 0.870826217212083 0.611747056223132 0.90777946 0.20309782 prediction 0.518158321977904 Functional Loss - CYP2B7P ENSG00000256612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:41442155 chr19:41442157 . . 0 23 hm5C_associated_SNPs_62505 0 0 0 1 1 CYP2B7P chr19:41442164 5'GT 41442164 Upstream 8bp
chr1 45227595 45227595 1 + C T UCEC 45227593 + 45227573 45227613 41 ACCCCTCTTTTGCAGATTGCCACGATCTCACCAGGCATAAG ACCCCTCTTTTGCAGATTGCCATGATCTCACCAGGCATAAG < 41bp 0.800872772157728 0.541818243463891 0.047510773 0.10028419 prediction 0.518109057387674 Functional Loss - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45227593 chr1:45227595 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_62510 0 0 1 0 2 KIF2C chr1:45227588 3'AG 45227588 Downstream 8bp
chr1 45227595 45227595 1 + C T UCEC 45227593 + 45227573 45227613 41 ACCCCTCTTTTGCAGATTGCCACGATCTCACCAGGCATAAG ACCCCTCTTTTGCAGATTGCCATGATCTCACCAGGCATAAG < 41bp 0.800872772157728 0.541818243463891 0.047510773 0.10028419 prediction 0.518109057387674 Functional Loss - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45227593 chr1:45227595 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_62510 0 0 1 0 2 KIF2C chr1:45227655 5'GT 45227655 Upstream 61bp
chr12 58009379 58009379 1 - C A THCA 58009382 - 58009362 58009402 41 GAAGACGCGCCTCTCTCGACCTCGGGAAGACAGCAGCCCTC GAAGACGCGCCTCTCTCGACCTCTGGAAGACAGCAGCCCTC < 41bp 0.759048909785345 0.370250044796916 0.18295074 0.09499121 prediction 0.51809781957069 Functional Loss - ARHGEF25 ENSG00000240771 CDS Human protein_coding chr12:58009382 chr12:58009379 synonymous SNV . 0 24 hm5C_associated_SNPs_62511 0 0 0 0 1 ARHGEF25 chr12:58009435 3'AG 58009435 Downstream 57bp
chr6 53989606 53989606 1 + G T STAD 53989603 + 53989583 53989623 41 AAAACACAGGGGACTGATCTCAAGACCTCATCACATCCTGA AAAACACAGGGGACTGATCTCAATACCTCATCACATCCTGA < 41bp 0.759042349797204 0.375042658708401 0.40405518 0.14775357 prediction 0.518084699594407 Functional Loss - MLIP ENSG00000146147 CDS Human protein_coding chr6:53989603 chr6:53989606 nonsynonymous SNV 0.339 1 24 hm5C_associated_SNPs_62513 0 0 0 0 1 MLIP chr6:53989663 5'GT 53989663 Upstream 58bp
chr2 71191604 71191604 1 + C T UCEC 71191602 + 71191582 71191622 41 CAACGTGCTCCCTTCCCTGTCGCGGCTGATGAAGTCAGCCA CAACGTGCTCCCTTCCCTGTCGTGGCTGATGAAGTCAGCCA < 41bp 0.779915663852077 0.520875509731576 0.5343933 0.8482866 prediction 0.518080308241002 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71191602 chr2:71191604 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_62514 0 0 0 0 2 ATP6V1B1 chr2:71191568 3'AG 71191568 Downstream 37bp
chr2 71191604 71191604 1 + C T UCEC 71191602 + 71191582 71191622 41 CAACGTGCTCCCTTCCCTGTCGCGGCTGATGAAGTCAGCCA CAACGTGCTCCCTTCCCTGTCGTGGCTGATGAAGTCAGCCA < 41bp 0.779915663852077 0.520875509731576 0.5343933 0.8482866 prediction 0.518080308241002 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71191602 chr2:71191604 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_62514 0 0 0 0 2 ATP6V1B1 chr2:71191672 5'GT 71191672 Upstream 69bp
chr21 43697021 43697021 1 + A C UCEC 43697017 + 43696997 43697037 41 CCCTGCAGGTGTCGGCACATCTGAAGCTTCAGGAGAAGGAT CCCTGCAGGTGTCGGCACATCTGACGCTTCAGGAGAAGGAT < 41bp 0.759026671633872 0.347254979299658 0.29041415 0.18500698 prediction 0.518053343267743 Functional Loss - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43697017 chr21:43697021 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_62517 0 0 0 0 2 ABCG1 chr21:43697005 3'AG 43697005 Downstream 17bp
chr21 43697021 43697021 1 + A C UCEC 43697017 + 43696997 43697037 41 CCCTGCAGGTGTCGGCACATCTGAAGCTTCAGGAGAAGGAT CCCTGCAGGTGTCGGCACATCTGACGCTTCAGGAGAAGGAT < 41bp 0.759026671633872 0.347254979299658 0.29041415 0.18500698 prediction 0.518053343267743 Functional Loss - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43697017 chr21:43697021 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_62517 0 0 0 0 2 ABCG1 chr21:43697055 5'GT 43697055 Upstream 35bp
chr3 16344253 16344253 1 + C T COAD 16344251 + 16344231 16344271 41 GCGGAACTCAAGCCATACATCACGGGTGAGTCCCCTAAAGA GCGGAACTCAAGCCATACATCATGGGTGAGTCCCCTAAAGA < 41bp 0.765380762557209 0.506360757321349 0.94217145 0.94212604 prediction 0.518040010471721 Functional Loss - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16344251 chr3:16344253 nonsynonymous SNV 0.950 5 23 hm5C_associated_SNPs_62518 0 0 1 0 1 OXNAD1 chr3:16344255 5'GT 16344255 Upstream 3bp
chr4 71232411 71232411 1 + G T UCEC 71232409 + 71232389 71232429 41 GACCATATCCACCTGGACCACTGGCTCCTCCTCCTCCACCA GACCATATCCACCTGGACCACTTGCTCCTCCTCCTCCACCA < 41bp 0.759009254042666 0.420317404918372 0.19602883 0.05128002 prediction 0.518018508085331 Functional Loss - SMR3A ENSG00000109208 CDS Human protein_coding chr4:71232409 chr4:71232411 synonymous SNV . 0 23 hm5C_associated_SNPs_62520 0 0 0 0 1 SMR3A chr4:71232361 3'AG 71232361 Downstream 51bp
chr12 15131001 15131001 1 + C T LUSC 15130999 + 15130979 15131019 41 TTCAAACCAGGGTCCTACCACCCCACGCAAAGGCCCTCCCA TTCAAACCAGGGTCCTACCACCTCACGCAAAGGCCCTCCCA < 41bp 0.810392032344809 0.551387204866413 0.025215179 0.053337425 prediction 0.518009654956793 Functional Loss - PDE6H ENSG00000139053 CDS Human protein_coding chr12:15130999 chr12:15131001 nonsynonymous SNV 0.935 4 23 hm5C_associated_SNPs_62523 0 0 0 0 1 PDE6H chr12:15130906 3'AG 15130906 Downstream 96bp
chr3 45527224 45527224 1 + G T STAD 45527222 + 45527202 45527242 41 TGGCTGTGAACATGCTTACCCAGCAGGAGGTCCCTGTCGTT TGGCTGTGAACATGCTTACCCATCAGGAGGTCCCTGTCGTT < 41bp 0.759000774845667 0.419722173739659 0.05962342 0.034036547 prediction 0.518001549691334 Functional Loss - LARS2 ENSG00000011376 CDS Human protein_coding chr3:45527222 chr3:45527224 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_62524 0 0 1 0 2 LARS2 chr3:45527184 3'AG 45527184 Downstream 41bp
chr3 45527224 45527224 1 + G T STAD 45527222 + 45527202 45527242 41 TGGCTGTGAACATGCTTACCCAGCAGGAGGTCCCTGTCGTT TGGCTGTGAACATGCTTACCCATCAGGAGGTCCCTGTCGTT < 41bp 0.759000774845667 0.419722173739659 0.05962342 0.034036547 prediction 0.518001549691334 Functional Loss - LARS2 ENSG00000011376 CDS Human protein_coding chr3:45527222 chr3:45527224 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_62524 0 0 1 0 2 LARS2 chr3:45527288 5'GT 45527288 Upstream 65bp
chr21 45815355 45815355 1 + C T SKCM 45815353 + 45815333 45815373 41 TCCTCAGGCCATGTGACCTTCACCATGGACCCCATCCGTGA TCCTCAGGCCATGTGACCTTCATCATGGACCCCATCCGTGA < 41bp 0.75899110332466 0.480011371932452 0.10014725 0.0774796 prediction 0.517982206649319 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45815353 chr21:45815355 nonsynonymous SNV 0.987 2 23 hm5C_associated_SNPs_62528 0 0 0 0 2 TRPM2 chr21:45815297 3'AG 45815297 Downstream 59bp
chr21 45815355 45815355 1 + C T SKCM 45815353 + 45815333 45815373 41 TCCTCAGGCCATGTGACCTTCACCATGGACCCCATCCGTGA TCCTCAGGCCATGTGACCTTCATCATGGACCCCATCCGTGA < 41bp 0.75899110332466 0.480011371932452 0.10014725 0.0774796 prediction 0.517982206649319 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45815353 chr21:45815355 nonsynonymous SNV 0.987 2 23 hm5C_associated_SNPs_62528 0 0 0 0 2 TRPM2 chr21:45815434 5'GT 45815434 Upstream 80bp
chr1 220928441 220928441 1 + C T BLCA 220928439 + 220928419 220928459 41 TTGCCTAGCAAGCAGCCTTCCTCAAACAAACTCCACAACTG TTGCCTAGCAAGCAGCCTTCCTTAAACAAACTCCACAACTG < 41bp 0.802555245115133 0.543569636259567 0.27987742 0.15789822 prediction 0.517971217711131 Functional Loss - MARC2 ENSG00000117791 CDS Human protein_coding chr1:220928439 chr1:220928441 nonsynonymous SNV 0.077 0 23 hm5C_associated_SNPs_62530 0 0 1 0 1 MARC2 chr1:220928462 5'GT 220928462 Upstream 22bp
chr10 22678164 22678164 1 + C T BRCA 22678162 + 22678142 22678182 41 TGGGTCCTGCAAAGGGAACACACGGCTGCCTGGCATCATGA TGGGTCCTGCAAAGGGAACACATGGCTGCCTGGCATCATGA < 41bp 0.795087004890733 0.536101448901715 0.17199191 0.13039923 prediction 0.517971111978037 Functional Loss - SPAG6 ENSG00000077327 CDS Human protein_coding chr10:22678162 chr10:22678164 nonsynonymous SNV 0.929 4 23 hm5C_associated_SNPs_62531 0 0 0 0 2 SPAG6 chr10:22678089 3'AG 22678089 Downstream 76bp
chr10 22678164 22678164 1 + C T BRCA 22678162 + 22678142 22678182 41 TGGGTCCTGCAAAGGGAACACACGGCTGCCTGGCATCATGA TGGGTCCTGCAAAGGGAACACATGGCTGCCTGGCATCATGA < 41bp 0.795087004890733 0.536101448901715 0.17199191 0.13039923 prediction 0.517971111978037 Functional Loss - SPAG6 ENSG00000077327 CDS Human protein_coding chr10:22678162 chr10:22678164 nonsynonymous SNV 0.929 4 23 hm5C_associated_SNPs_62531 0 0 0 0 2 SPAG6 chr10:22678241 5'GT 22678241 Upstream 78bp
chr19 8503305 8503305 1 + G T OV 8503303 + 8503283 8503323 41 CTACCACTGCCAGCTGTACTCCGAGTGGAGAAAGACCAACC CTACCACTGCCAGCTGTACTCCTAGTGGAGAAAGACCAACC < 41bp 0.758981320338131 0.422634298933463 0.7801304 0.21826407 prediction 0.517962640676261 Functional Loss - MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8503303 chr19:8503305 stopgain 0.966 1 23 hm5C_associated_SNPs_62534 0 0 1 0 1 MARCH2 chr19:8503272 3'AG 8503272 Downstream 34bp
chr2 176958368 176958368 1 + G T LUAD 176958366 + 176958346 176958386 41 ACTGCACCAAGGACCAGCCACAGGGGTCCCACTTTTGGAAA ACTGCACCAAGGACCAGCCACATGGGTCCCACTTTTGGAAA < 41bp 0.888530794741289 0.629560072103935 0.93663824 0.2656301 prediction 0.517941445274708 Functional Loss - HOXD13 ENSG00000128714 CDS Human protein_coding chr2:176958366 chr2:176958368 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_62536 0 0 1 0 1 HOXD13 chr2:176958399 5'GT 176958399 Upstream 32bp
chr14 24030595 24030595 1 - C A OV 24030597 - 24030577 24030617 41 AGATCTCCTGGATGGGGCTTCTGGGGATGTCCAGCATCCTC AGATCTCCTGGATGGGGCTTCTTGGGATGTCCAGCATCCTC < 41bp 0.884185930626741 0.625222416426363 0.4047086 0.3409609 prediction 0.517927028400757 Functional Loss - AP1G2 ENSG00000213983 CDS Human protein_coding chr14:24030597 chr14:24030595 nonsynonymous SNV 0.802 2 23 hm5C_associated_SNPs_62539 0 0 1 0 1 AP1G2 chr14:24030640 3'AG 24030640 Downstream 46bp
chr2 29274706 29274706 1 + C T rs141739902 29274704 + 29274684 29274724 41 CTCTGGCACTTCCTGAACACCGCCACCAGGAATGGCACCCT CTCTGGCACTTCCTGAACACCGTCACCAGGAATGGCACCCT < 41bp 0.758959147597756 0.488384048102242 0.044162303 0.014346331 prediction 0.517918295195512 Functional Loss - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29274704 chr2:29274706 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_62541 0 0 0 0 1 TOGARAM2 chr2:29274622 3'AG 29274622 Downstream 85bp
chr12 120428048 120428048 1 + G T SARC 120428045 + 120428025 120428065 41 AGGCGCTGCTCGAGAGGAACCAGGACATGAGCCGGCAGTAC AGGCGCTGCTCGAGAGGAACCAGTACATGAGCCGGCAGTAC < 41bp 0.907072905029887 0.648116161329555 0.8895829 0.8202002 prediction 0.517913487400664 Functional Loss - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120428045 chr12:120428048 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_62543 0 0 1 1 1 BICDL1 chr12:120428101 5'GT 120428101 Upstream 54bp
chr1 230371813 230371813 1 + C T STAD 230371811 + 230371791 230371831 41 CCGGCCACCAGCGTGGTGATCACGTTTCACAATGAAGCCAG CCGGCCACCAGCGTGGTGATCATGTTTCACAATGAAGCCAG < 41bp 0.77577372499449 0.516821868268366 0.41311353 0.4655766 prediction 0.517903713452248 Functional Loss - GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230371811 chr1:230371813 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_62545 0 0 1 0 2 GALNT2 chr1:230371760 3'AG 230371760 Downstream 54bp
chr1 230371813 230371813 1 + C T STAD 230371811 + 230371791 230371831 41 CCGGCCACCAGCGTGGTGATCACGTTTCACAATGAAGCCAG CCGGCCACCAGCGTGGTGATCATGTTTCACAATGAAGCCAG < 41bp 0.77577372499449 0.516821868268366 0.41311353 0.4655766 prediction 0.517903713452248 Functional Loss - GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230371811 chr1:230371813 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_62545 0 0 1 0 2 GALNT2 chr1:230371858 5'GT 230371858 Upstream 46bp
chr7 143079962 143079962 1 + A T rs141742199 143079958 + 143079938 143079978 41 TTCCAAGTCCAGTACCAAGCCTGCAGCCGGGGGCACAGCAC TTCCAAGTCCAGTACCAAGCCTGCTGCCGGGGGCACAGCAC < 41bp 0.870671639751649 0.611728265141425 0.32523483 0.16149905 prediction 0.517886749220448 Functional Loss - ZYX ENSG00000159840 CDS Human protein_coding chr7:143079958 chr7:143079962 synonymous SNV . 0 25 hm5C_associated_SNPs_62546 0 0 1 0 1 ZYX chr7:143079894 3'AG 143079894 Downstream 69bp
chr6 13599303 13599303 1 + C T rs3757261 13599301 + 13599281 13599321 41 GCGGGGGCTTGCTGCGACCTCACGTCGTGTGGTTTGGAGAA GCGGGGGCTTGCTGCGACCTCATGTCGTGTGGTTTGGAGAA < 41bp 0.798480841110107 0.539542710113039 0.123336375 0.11527583 prediction 0.517876261994136 Functional Loss - SIRT5 ENSG00000124523 CDS Human protein_coding chr6:13599301 chr6:13599303 synonymous SNV . 0 23 hm5C_associated_SNPs_62549 0 0 1 0 2 SIRT5 chr6:13599264 3'AG 13599264 Downstream 40bp
chr6 13599303 13599303 1 + C T rs3757261 13599301 + 13599281 13599321 41 GCGGGGGCTTGCTGCGACCTCACGTCGTGTGGTTTGGAGAA GCGGGGGCTTGCTGCGACCTCATGTCGTGTGGTTTGGAGAA < 41bp 0.798480841110107 0.539542710113039 0.123336375 0.11527583 prediction 0.517876261994136 Functional Loss - SIRT5 ENSG00000124523 CDS Human protein_coding chr6:13599301 chr6:13599303 synonymous SNV . 0 23 hm5C_associated_SNPs_62549 0 0 1 0 2 SIRT5 chr6:13599387 5'GT 13599387 Upstream 85bp
chr11 66262860 66262860 1 + G C HNSC 66262856 + 66262836 66262876 41 ATTCAGAGCTGGTATCGGAGCGGGGAGACCTGGGATAGCAA ATTCAGAGCTGGTATCGGAGCGGGCAGACCTGGGATAGCAA < 41bp 0.824580164686391 0.565655689804472 0.91975 0.89349425 prediction 0.517848949763837 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66262856 chr11:66262860 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_62550 0 0 1 0 1 DPP3 chr11:66262836 3'AG 66262836 Downstream 25bp
chr17 59485475 59485475 1 + G T UCEC 59485473 + 59485453 59485493 41 CCCCTACACCTACATGGCAGCAGCAGCCGCAGCCGCCTCGG CCCCTACACCTACATGGCAGCATCAGCCGCAGCCGCCTCGG < 41bp 0.837761147758614 0.578845109839905 0.32071346 0.01876092 prediction 0.517832075837419 Functional Loss - TBX2 ENSG00000121068 CDS Human protein_coding chr17:59485473 chr17:59485475 nonsynonymous SNV 0.966 3 23 hm5C_associated_SNPs_62552 0 0 1 0 1 TBX2 chr17:59485415 3'AG 59485415 Downstream 61bp
chr4 128584715 128584715 1 + C T UCEC 128584713 + 128584693 128584733 41 TTATGTATCTCACACTACAGCTCGACTCAGAAACCTCAAAG TTATGTATCTCACACTACAGCTTGACTCAGAAACCTCAAAG < 41bp 0.790014512240564 0.531105986237367 0.008571714 0.014810413 prediction 0.517817052006393 Functional Loss - INTU ENSG00000164066 CDS Human protein_coding chr4:128584713 chr4:128584715 synonymous SNV . 0 23 hm5C_associated_SNPs_62553 0 0 1 0 1 INTU chr4:128584739 5'GT 128584739 Upstream 25bp
chr17 27185427 27185427 1 + C T SARC 27185425 + 27185405 27185445 41 GGATGTCTCAGACAAGTGGACACGGAACCAGCTCAGCCCCC GGATGTCTCAGACAAGTGGACATGGAACCAGCTCAGCCCCC < 41bp 0.778223196240635 0.519315995899632 0.4027379 0.40249678 prediction 0.517814400682007 Functional Loss - ERAL1 ENSG00000132591 CDS Human protein_coding chr17:27185425 chr17:27185427 nonsynonymous SNV 0.988 5 23 hm5C_associated_SNPs_62555 0 0 1 0 2 ERAL1 chr17:27185392 3'AG 27185392 Downstream 36bp
chr17 27185427 27185427 1 + C T SARC 27185425 + 27185405 27185445 41 GGATGTCTCAGACAAGTGGACACGGAACCAGCTCAGCCCCC GGATGTCTCAGACAAGTGGACATGGAACCAGCTCAGCCCCC < 41bp 0.778223196240635 0.519315995899632 0.4027379 0.40249678 prediction 0.517814400682007 Functional Loss - ERAL1 ENSG00000132591 CDS Human protein_coding chr17:27185425 chr17:27185427 nonsynonymous SNV 0.988 5 23 hm5C_associated_SNPs_62555 0 0 1 0 2 ERAL1 chr17:27185504 5'GT 27185504 Upstream 78bp
chr11 67254613 67254613 1 + C T LGG 67254611 + 67254591 67254631 41 GTGTGGGAGACCATCGTGTGCACCATGCGAGAAGGGGAGAT GTGTGGGAGACCATCGTGTGCATCATGCGAGAAGGGGAGAT < 41bp 0.7967039235947 0.537802660999671 0.099693954 0.16727746 prediction 0.517802525190058 Functional Loss - AIP ENSG00000110711 CDS Human protein_coding chr11:67254611 chr11:67254613 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_62556 0 0 0 0 1 AIP chr11:67254656 5'GT 67254656 Upstream 44bp
chr8 42010604 42010604 1 + G C rs144817752 42010603 + 42010583 42010623 41 CCGCGCCTAGGAGCAGTGGGCGCTGAGAGCAGCAAGGCCAG CCGCGCCTAGGAGCAGTGGGCCCTGAGAGCAGCAAGGCCAG < 41bp 0.762617047659203 0.503718244744434 0.79541314 0.2922736 prediction 0.517797605829538 Functional Loss - AP3M2 ENSG00000070718 UTR5 Human protein_coding chr8:42010603 chr8:42010604 . . 0 22 hm5C_associated_SNPs_62557 0 0 1 0 1 AP3M2 chr8:42010623 5'GT 42010623 Upstream 20bp
chr6 160517598 160517598 1 + C T STAD 160517596 + 160517576 160517616 41 ACGGGATCCCCGAGTTCAGTCACGAGACTGCCGACTGCCAG ACGGGATCCCCGAGTTCAGTCATGAGACTGCCGACTGCCAG < 41bp 0.776188608640175 0.517307961281421 0.33512992 0.34567705 prediction 0.517761294717508 Functional Loss - IGF2R ENSG00000197081 CDS Human protein_coding chr6:160517596 chr6:160517598 synonymous SNV . 0 23 hm5C_associated_SNPs_62563 0 0 1 0 1 IGF2R chr6:160517657 5'GT 160517657 Upstream 60bp
chrX 70832741 70832741 1 + C T rs2280962 70832739 + 70832719 70832759 41 TGCTACACCAAATCGTTGGACACCAGCCGCTTCATCTGTGC TGCTACACCAAATCGTTGGACATCAGCCGCTTCATCTGTGC < 41bp 0.758879696243989 0.487486722423855 0.18617615 0.2682045 prediction 0.517759392487977 Functional Loss - GCNA ENSG00000147174 CDS Human protein_coding chrX:70832739 chrX:70832741 nonsynonymous SNV 0.009 2 23 hm5C_associated_SNPs_62564 0 0 1 0 1 GCNA chrX:70832712 3'AG 70832712 Downstream 30bp
chr10 81372125 81372125 1 + G T LUAD 81372122 + 81372102 81372142 41 TCCTGGAAATGATGGGCTGCCTGGAGCCCCTGGTATCCCTG TCCTGGAAATGATGGGCTGCCTGTAGCCCCTGGTATCCCTG < 41bp 0.905729694229244 0.64685161851513 0.31126046 0.08107281 prediction 0.517756151428229 Functional Loss - SFTPA1 ENSG00000122852 CDS Human protein_coding chr10:81372122 chr10:81372125 nonsynonymous SNV 0.517 5 24 hm5C_associated_SNPs_62565 0 0 0 0 2 SFTPA1 chr10:81372068 3'AG 81372068 Downstream 58bp
chr10 81372125 81372125 1 + G T LUAD 81372122 + 81372102 81372142 41 TCCTGGAAATGATGGGCTGCCTGGAGCCCCTGGTATCCCTG TCCTGGAAATGATGGGCTGCCTGTAGCCCCTGGTATCCCTG < 41bp 0.905729694229244 0.64685161851513 0.31126046 0.08107281 prediction 0.517756151428229 Functional Loss - SFTPA1 ENSG00000122852 CDS Human protein_coding chr10:81372122 chr10:81372125 nonsynonymous SNV 0.517 5 24 hm5C_associated_SNPs_62565 0 0 0 0 2 SFTPA1 chr10:81372187 5'GT 81372187 Upstream 63bp
chr3 52813062 52813062 1 + G T UCEC 52813060 + 52813040 52813080 41 GGAGAGAATGCCGGCCTTGTCAGGTGAGTTCTGGGCCTGCT GGAGAGAATGCCGGCCTTGTCATGTGAGTTCTGGGCCTGCT < 41bp 0.883083264519838 0.624216720305567 0.94615036 0.9006474 prediction 0.517733088428542 Functional Loss - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52813060 chr3:52813062 nonsynonymous SNV 0.918 4 23 hm5C_associated_SNPs_62566 0 0 0 0 1 ITIH1 chr3:52813062 5'GT 52813062 Upstream 1bp
chr11 62503008 62503008 1 + C T SKCM 62503006 + 62502986 62503026 41 ATGACCAGGCCCGCCACTACCTCCTGGCTGCCGTGAATAGG ATGACCAGGCCCGCCACTACCTTCTGGCTGCCGTGAATAGG < 41bp 0.758854239309603 0.47582014768806 0.19513014 0.07710907 prediction 0.517708478619207 Functional Loss - TTC9C ENSG00000162222 CDS Human protein_coding chr11:62503006 chr11:62503008 synonymous SNV . 0 23 hm5C_associated_SNPs_62569 0 0 1 0 1 TTC9C chr11:62503036 5'GT 62503036 Upstream 29bp
chr1 201966627 201966627 1 + G T OV 201966624 + 201966604 201966644 41 AACGCCAACTGGGGTGAATTCTGGCTCAATGAAGGTTTCAC AACGCCAACTGGGGTGAATTCTGTCTCAATGAAGGTTTCAC < 41bp 0.758849093380058 0.365965755656779 0.35950005 0.11909363 prediction 0.517698186760116 Functional Loss - RNPEP ENSG00000176393 CDS Human protein_coding chr1:201966624 chr1:201966627 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_62570 0 0 1 0 1 RNPEP chr1:201966682 5'GT 201966682 Upstream 56bp
chrX 153663842 153663842 1 + G T UCEC 153663840 + 153663820 153663860 41 CTCCCTGGCAGATGATGCTTCAGGACTTCCAGGTATGGAGC CTCCCTGGCAGATGATGCTTCATGACTTCCAGGTATGGAGC < 41bp 0.889095219012371 0.630251127448317 0.7848286 0.10340631 prediction 0.517688183128109 Functional Loss - ATP6AP1 ENSG00000071553 CDS Human protein_coding chrX:153663840 chrX:153663842 nonsynonymous SNV 0.918 0 23 hm5C_associated_SNPs_62571 0 0 1 0 1 ATP6AP1 chrX:153663851 5'GT 153663851 Upstream 10bp
chr1 11579504 11579504 1 + G C rs2072993 11579500 + 11579480 11579520 41 AGGTTGGAGGCAGCCCTGCCCAGGGCCCCATACCCTACCTG AGGTTGGAGGCAGCCCTGCCCAGGCCCCCATACCCTACCTG < 41bp 0.836045775856842 0.577206549140015 0.90847474 0.7178388 prediction 0.517678453433655 Functional Loss - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11579500 chr1:11579504 nonsynonymous SNV 0.218 1 25 hm5C_associated_SNPs_62572 0 0 0 0 2 DISP3 chr1:11579412 3'AG 11579412 Downstream 93bp
chr1 11579504 11579504 1 + G C rs2072993 11579500 + 11579480 11579520 41 AGGTTGGAGGCAGCCCTGCCCAGGGCCCCATACCCTACCTG AGGTTGGAGGCAGCCCTGCCCAGGCCCCCATACCCTACCTG < 41bp 0.836045775856842 0.577206549140015 0.90847474 0.7178388 prediction 0.517678453433655 Functional Loss - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11579500 chr1:11579504 nonsynonymous SNV 0.218 1 25 hm5C_associated_SNPs_62572 0 0 0 0 2 DISP3 chr1:11579560 5'GT 11579560 Upstream 57bp
chr7 100468269 100468269 1 + C T UCEC 100468267 + 100468247 100468287 41 TGGCCCTTGATCGCGTCTTTCACGTGGGCTGCTTTGTATGT TGGCCCTTGATCGCGTCTTTCATGTGGGCTGCTTTGTATGT < 41bp 0.769765959911045 0.510926928867975 0.272927 0.4089864 prediction 0.517678062086141 Functional Loss - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100468267 chr7:100468269 synonymous SNV . 0 23 hm5C_associated_SNPs_62573 0 0 1 0 2 TRIP6 chr7:100468196 3'AG 100468196 Downstream 74bp
chr7 100468269 100468269 1 + C T UCEC 100468267 + 100468247 100468287 41 TGGCCCTTGATCGCGTCTTTCACGTGGGCTGCTTTGTATGT TGGCCCTTGATCGCGTCTTTCATGTGGGCTGCTTTGTATGT < 41bp 0.769765959911045 0.510926928867975 0.272927 0.4089864 prediction 0.517678062086141 Functional Loss - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100468267 chr7:100468269 synonymous SNV . 0 23 hm5C_associated_SNPs_62573 0 0 1 0 2 TRIP6 chr7:100468365 5'GT 100468365 Upstream 97bp
chr3 113003353 113003353 1 + C T BLCA 113003351 + 113003331 113003371 41 CACATGAATAGGGGCTGCCCCTCGGCTGCAGTGGGCTACCC CACATGAATAGGGGCTGCCCCTTGGCTGCAGTGGGCTACCC < 41bp 0.773417223222358 0.514580574224615 0.6677827 0.34515825 prediction 0.517673297995486 Functional Loss - BOC ENSG00000144857 CDS Human protein_coding chr3:113003351 chr3:113003353 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_62574 0 0 0 0 1 BOC chr3:113003414 5'GT 113003414 Upstream 62bp
chr4 187077213 187077213 1 + G T LUAD 187077211 + 187077191 187077231 41 GGTAGGAAATGGCGCAAACTCGGACTTCCTCCTGTTTCCCC GGTAGGAAATGGCGCAAACTCGTACTTCCTCCTGTTTCCCC < 41bp 0.758835259180648 0.426632032558564 0.9308671 0.68752694 prediction 0.517670518361297 Functional Loss - FAM149A ENSG00000109794 CDS Human protein_coding chr4:187077211 chr4:187077213 nonsynonymous SNV 0.051 4 23 hm5C_associated_SNPs_62575 0 0 0 0 1 FAM149A chr4:187077154 3'AG 187077154 Downstream 60bp
chr1 111435056 111435056 1 + G T HNSC 111435053 + 111435033 111435073 41 TTCCATAACCTCCCCTCCCTCACGCTGGGCAATGTGTTTGT TTCCATAACCTCCCCTCCCTCACTCTGGGCAATGTGTTTGT < 41bp 0.758831556721274 0.368932454566229 0.056881815 0.030412167 prediction 0.517663113442547 Functional Loss - CD53 ENSG00000143119 CDS Human protein_coding chr1:111435053 chr1:111435056 synonymous SNV . 0 24 hm5C_associated_SNPs_62577 0 0 1 0 2 CD53 chr1:111434967 3'AG 111434967 Downstream 90bp
chr1 111435056 111435056 1 + G T HNSC 111435053 + 111435033 111435073 41 TTCCATAACCTCCCCTCCCTCACGCTGGGCAATGTGTTTGT TTCCATAACCTCCCCTCCCTCACTCTGGGCAATGTGTTTGT < 41bp 0.758831556721274 0.368932454566229 0.056881815 0.030412167 prediction 0.517663113442547 Functional Loss - CD53 ENSG00000143119 CDS Human protein_coding chr1:111435053 chr1:111435056 synonymous SNV . 0 24 hm5C_associated_SNPs_62577 0 0 1 0 2 CD53 chr1:111435155 5'GT 111435155 Upstream 100bp
chr12 101510552 101510552 1 + C T UCEC 101510550 + 101510530 101510570 41 GAATCTGATGGCAGTGAGTTCTCGGGGACTCCTCTTAAGTA GAATCTGATGGCAGTGAGTTCTTGGGGACTCCTCTTAAGTA < 41bp 0.758826277724008 0.48583423286501 0.23980653 0.29176736 prediction 0.517652555448016 Functional Loss - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101510550 chr12:101510552 nonsynonymous SNV 0.690 0 23 hm5C_associated_SNPs_62578 0 0 0 0 2 ANO4 chr12:101510457 3'AG 101510457 Downstream 96bp
chr12 101510552 101510552 1 + C T UCEC 101510550 + 101510530 101510570 41 GAATCTGATGGCAGTGAGTTCTCGGGGACTCCTCTTAAGTA GAATCTGATGGCAGTGAGTTCTTGGGGACTCCTCTTAAGTA < 41bp 0.758826277724008 0.48583423286501 0.23980653 0.29176736 prediction 0.517652555448016 Functional Loss - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101510550 chr12:101510552 nonsynonymous SNV 0.690 0 23 hm5C_associated_SNPs_62578 0 0 0 0 2 ANO4 chr12:101510576 5'GT 101510576 Upstream 25bp
chr17 3560043 3560043 1 + C T COAD 3560041 + 3560021 3560061 41 GACGTCTTCTTCAGCCTGCACGCGGTTGTCCTCACGCTGAT GACGTCTTCTTCAGCCTGCACGTGGTTGTCCTCACGCTGAT < 41bp 0.776220789278358 0.51739681051621 0.29320848 0.25538778 prediction 0.517647957524295 Functional Loss - CTNS ENSG00000040531 CDS Human protein_coding chr17:3560041 chr17:3560043 nonsynonymous SNV 0.265 5 23 hm5C_associated_SNPs_62579 0 0 0 0 2 CTNS chr17:3559970 3'AG 3559970 Downstream 74bp
chr17 3560043 3560043 1 + C T COAD 3560041 + 3560021 3560061 41 GACGTCTTCTTCAGCCTGCACGCGGTTGTCCTCACGCTGAT GACGTCTTCTTCAGCCTGCACGTGGTTGTCCTCACGCTGAT < 41bp 0.776220789278358 0.51739681051621 0.29320848 0.25538778 prediction 0.517647957524295 Functional Loss - CTNS ENSG00000040531 CDS Human protein_coding chr17:3560041 chr17:3560043 nonsynonymous SNV 0.265 5 23 hm5C_associated_SNPs_62579 0 0 0 0 2 CTNS chr17:3560089 5'GT 3560089 Upstream 47bp
chr1 78585102 78585102 1 + A C UCEC 78585098 + 78585078 78585118 41 AATAGAGCTGAGGTCAAAGGCTGGAAAGTCATCAGGAGAAA AATAGAGCTGAGGTCAAAGGCTGGCAAGTCATCAGGAGAAA < 41bp 0.918163685209354 0.659346317438358 0.24632704 0.16416368 prediction 0.517634735541992 Functional Loss - GIPC2 ENSG00000137960 CDS Human protein_coding chr1:78585098 chr1:78585102 synonymous SNV . 0 25 hm5C_associated_SNPs_62580 0 0 0 0 2 GIPC2 chr1:78585077 3'AG 78585077 Downstream 26bp
chr1 78585102 78585102 1 + A C UCEC 78585098 + 78585078 78585118 41 AATAGAGCTGAGGTCAAAGGCTGGAAAGTCATCAGGAGAAA AATAGAGCTGAGGTCAAAGGCTGGCAAGTCATCAGGAGAAA < 41bp 0.918163685209354 0.659346317438358 0.24632704 0.16416368 prediction 0.517634735541992 Functional Loss - GIPC2 ENSG00000137960 CDS Human protein_coding chr1:78585098 chr1:78585102 synonymous SNV . 0 25 hm5C_associated_SNPs_62580 0 0 0 0 2 GIPC2 chr1:78585183 5'GT 78585183 Upstream 82bp
chr18 77624229 77624229 1 + G C LGG 77624225 + 77624205 77624245 41 GCCTGCGTGTCCGTGTCCTTCGTGGCCGTCACGGCCGTGGG GCCTGCGTGTCCGTGTCCTTCGTGCCCGTCACGGCCGTGGG < 41bp 0.789826148592551 0.531014674650031 0.9299916 0.4528777 prediction 0.517622947885039 Functional Loss - KCNG2 ENSG00000178342 CDS Human protein_coding chr18:77624225 chr18:77624229 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_62584 0 0 0 0 1 KCNG2 chr18:77624291 5'GT 77624291 Upstream 63bp
chr8 145731489 145731489 1 + T C COAD 145731488 + 145731468 145731508 41 CAGGAGCTTGCCTCCTTCCACTCCACCTCCAAGGGCTACAT CAGGAGCTTGCCTCCTTCCACCCCACCTCCAAGGGCTACAT < 41bp 0.761999742474377 0.503189571551112 0.096562 0.0068606734 prediction 0.517620341846531 Functional Loss - GPT ENSG00000167701 CDS Human protein_coding chr8:145731488 chr8:145731489 nonsynonymous SNV 0.892 5 22 hm5C_associated_SNPs_62585 0 0 0 0 1 GPT chr8:145731514 5'GT 145731514 Upstream 26bp
chr11 70281197 70281197 1 + G C LUSC 70281193 + 70281173 70281213 41 ACCAACATCGAGATGATTGACGACGGCTGGTGGCGCGGGGT ACCAACATCGAGATGATTGACGACCGCTGGTGGCGCGGGGT < 41bp 0.783656019409084 0.524847792699502 0.27547187 0.14202225 prediction 0.517616453419163 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70281193 chr11:70281197 nonsynonymous SNV 0.625 4 25 hm5C_associated_SNPs_62586 0 0 1 0 2 CTTN chr11:70281132 3'AG 70281132 Downstream 66bp
chr11 70281197 70281197 1 + G C LUSC 70281193 + 70281173 70281213 41 ACCAACATCGAGATGATTGACGACGGCTGGTGGCGCGGGGT ACCAACATCGAGATGATTGACGACCGCTGGTGGCGCGGGGT < 41bp 0.783656019409084 0.524847792699502 0.27547187 0.14202225 prediction 0.517616453419163 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70281193 chr11:70281197 nonsynonymous SNV 0.625 4 25 hm5C_associated_SNPs_62586 0 0 1 0 2 CTTN chr11:70281225 5'GT 70281225 Upstream 29bp
chr22 26707891 26707891 1 + G T LUSC 26707889 + 26707869 26707909 41 TCATCGAATGCATCAATGTGCGGGACCCATACTGGAATGAC TCATCGAATGCATCAATGTGCGTGACCCATACTGGAATGAC < 41bp 0.758795705742927 0.41945684573628 0.3833171 0.20946234 prediction 0.517591411485853 Functional Loss - SEZ6L ENSG00000100095 CDS Human protein_coding chr22:26707889 chr22:26707891 synonymous SNV . 0 23 hm5C_associated_SNPs_62588 0 0 0 0 1 SEZ6L chr22:26707928 5'GT 26707928 Upstream 38bp
chr1 100606565 100606565 1 + C T HNSC 100606563 + 100606543 100606583 41 ATCCTAGTGGAAAAGGTGACCACAAGATTCAAGGTAAGTGA ATCCTAGTGGAAAAGGTGACCATAAGATTCAAGGTAAGTGA < 41bp 0.758782966627647 0.491486154338946 0.0418638 0.03834337 prediction 0.517565933255295 Functional Loss - TRMT13 ENSG00000122435 CDS Human protein_coding chr1:100606563 chr1:100606565 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_62590 0 0 1 2 1 TRMT13 chr1:100606575 5'GT 100606575 Upstream 11bp
chr4 37831664 37831664 1 + C T STAD 37831662 + 37831642 37831682 41 ACTACGAAAATGTTTTGGGGCCCGAATGGAGTTTGGGACAG ACTACGAAAATGTTTTGGGGCCTGAATGGAGTTTGGGACAG < 41bp 0.807105594523574 0.54832454006625 0.2412439 0.40614417 prediction 0.517562108914648 Functional Loss - PGM2 ENSG00000169299 CDS Human protein_coding chr4:37831662 chr4:37831664 stopgain 0.988 1 23 hm5C_associated_SNPs_62591 0 0 1 0 2 PGM2 chr4:37831586 3'AG 37831586 Downstream 79bp
chr4 37831664 37831664 1 + C T STAD 37831662 + 37831642 37831682 41 ACTACGAAAATGTTTTGGGGCCCGAATGGAGTTTGGGACAG ACTACGAAAATGTTTTGGGGCCTGAATGGAGTTTGGGACAG < 41bp 0.807105594523574 0.54832454006625 0.2412439 0.40614417 prediction 0.517562108914648 Functional Loss - PGM2 ENSG00000169299 CDS Human protein_coding chr4:37831662 chr4:37831664 stopgain 0.988 1 23 hm5C_associated_SNPs_62591 0 0 1 0 2 PGM2 chr4:37831753 5'GT 37831753 Upstream 90bp
chr5 148629383 148629383 1 + C T BRCA 148629381 + 148629361 148629401 41 GCTTTTCTCTCCTGCAGCCCCTCGGTCGCACTACCTGGCTG GCTTTTCTCTCCTGCAGCCCCTTGGTCGCACTACCTGGCTG < 41bp 0.758768260501933 0.488334781952553 0.22753811 0.16274393 prediction 0.517536521003867 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148629381 chr5:148629383 nonsynonymous SNV 0.825 2 23 hm5C_associated_SNPs_62592 0 0 0 0 2 ABLIM3 chr5:148629378 3'AG 148629378 Downstream 6bp
chr5 148629383 148629383 1 + C T BRCA 148629381 + 148629361 148629401 41 GCTTTTCTCTCCTGCAGCCCCTCGGTCGCACTACCTGGCTG GCTTTTCTCTCCTGCAGCCCCTTGGTCGCACTACCTGGCTG < 41bp 0.758768260501933 0.488334781952553 0.22753811 0.16274393 prediction 0.517536521003867 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148629381 chr5:148629383 nonsynonymous SNV 0.825 2 23 hm5C_associated_SNPs_62592 0 0 0 0 2 ABLIM3 chr5:148629407 5'GT 148629407 Upstream 25bp
chr22 40073401 40073401 1 + G T HNSC 40073399 + 40073379 40073419 41 TTCTTCATCTATGCTGCTCTCGGGGTGGAGCTCTTTGGGAA TTCTTCATCTATGCTGCTCTCGTGGTGGAGCTCTTTGGGAA < 41bp 0.758767543999778 0.414883158530424 0.95748377 0.93197906 prediction 0.517535087999556 Functional Loss - CACNA1I ENSG00000100346 CDS Human protein_coding chr22:40073399 chr22:40073401 nonsynonymous SNV 0.198 4 23 hm5C_associated_SNPs_62593 0 0 0 0 2 CACNA1I chr22:40073346 3'AG 40073346 Downstream 56bp
chr22 40073401 40073401 1 + G T HNSC 40073399 + 40073379 40073419 41 TTCTTCATCTATGCTGCTCTCGGGGTGGAGCTCTTTGGGAA TTCTTCATCTATGCTGCTCTCGTGGTGGAGCTCTTTGGGAA < 41bp 0.758767543999778 0.414883158530424 0.95748377 0.93197906 prediction 0.517535087999556 Functional Loss - CACNA1I ENSG00000100346 CDS Human protein_coding chr22:40073399 chr22:40073401 nonsynonymous SNV 0.198 4 23 hm5C_associated_SNPs_62593 0 0 0 0 2 CACNA1I chr22:40073424 5'GT 40073424 Upstream 24bp
chr7 102575051 102575051 1 + C T SKCM 102575049 + 102575029 102575069 41 ACCCCAAGTGTCAGGGAGACCCCCAGTCATCAAGCCTGAGG ACCCCAAGTGTCAGGGAGACCCTCAGTCATCAAGCCTGAGG < 41bp 0.758766370276056 0.487118340295755 0.08314744 0.059206992 prediction 0.517532740552112 Functional Loss - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102575049 chr7:102575051 nonsynonymous SNV 0.976 0 23 hm5C_associated_SNPs_62594 0 0 0 0 1 LRRC17 chr7:102575132 5'GT 102575132 Upstream 82bp
chr6 167711490 167711490 1 + C T UCEC 167711488 + 167711468 167711508 41 GCCAGTGACTGCCTGATGGCCACCACAACCACCAACAGCAC GCCAGTGACTGCCTGATGGCCATCACAACCACCAACAGCAC < 41bp 0.758735097295659 0.491793556175215 0.08031124 0.16433948 prediction 0.517470194591317 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167711488 chr6:167711490 nonsynonymous SNV 0.075 0 23 hm5C_associated_SNPs_62597 0 0 1 0 2 UNC93A chr6:167711433 3'AG 167711433 Downstream 58bp
chr6 167711490 167711490 1 + C T UCEC 167711488 + 167711468 167711508 41 GCCAGTGACTGCCTGATGGCCACCACAACCACCAACAGCAC GCCAGTGACTGCCTGATGGCCATCACAACCACCAACAGCAC < 41bp 0.758735097295659 0.491793556175215 0.08031124 0.16433948 prediction 0.517470194591317 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167711488 chr6:167711490 nonsynonymous SNV 0.075 0 23 hm5C_associated_SNPs_62597 0 0 1 0 2 UNC93A chr6:167711558 5'GT 167711558 Upstream 69bp
chr17 74381706 74381706 1 + G C rs199677032 74381702 + 74381682 74381722 41 CAGCGCCAGGGACCCCCTGGCAGCGGGAGCCGCGGGTCGAG CAGCGCCAGGGACCCCCTGGCAGCCGGAGCCGCGGGTCGAG < 41bp 0.76453562679008 0.505821187433648 0.86324346 0.253789 prediction 0.517428878712864 Functional Loss - SPHK1 ENSG00000176170 CDS Human protein_coding chr17:74381702 chr17:74381706 nonsynonymous SNV 0.065 1 25 hm5C_associated_SNPs_62601 0 0 1 0 1 SPHK1 chr17:74381735 5'GT 74381735 Upstream 30bp
chr17 79031743 79031743 1 + G C BLCA 79031739 + 79031719 79031759 41 GTGAAGATGGGGGAGCTGGCCAGCGAGAGCCAGGGCTCCAA GTGAAGATGGGGGAGCTGGCCAGCCAGAGCCAGGGCTCCAA < 41bp 0.80914330542703 0.550438400207668 0.5635866 0.27416128 prediction 0.517409810438723 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79031739 chr17:79031743 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_62603 0 0 0 0 2 BAIAP2 chr17:79031681 3'AG 79031681 Downstream 63bp
chr17 79031743 79031743 1 + G C BLCA 79031739 + 79031719 79031759 41 GTGAAGATGGGGGAGCTGGCCAGCGAGAGCCAGGGCTCCAA GTGAAGATGGGGGAGCTGGCCAGCCAGAGCCAGGGCTCCAA < 41bp 0.80914330542703 0.550438400207668 0.5635866 0.27416128 prediction 0.517409810438723 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79031739 chr17:79031743 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_62603 0 0 0 0 2 BAIAP2 chr17:79031767 5'GT 79031767 Upstream 25bp
chr11 47603753 47603753 1 + G T LUAD 47603750 + 47603730 47603770 41 TCTGTGTTCAAGGCAGCCAACTGGTATGAAAGGGAGGTGAG TCTGTGTTCAAGGCAGCCAACTGTTATGAAAGGGAGGTGAG < 41bp 0.758691226773915 0.365451225137287 0.31675225 0.24410045 prediction 0.51738245354783 Functional Loss - NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47603750 chr11:47603753 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_62607 0 0 1 0 1 NDUFS3 chr11:47603765 5'GT 47603765 Upstream 13bp
chr13 24890263 24890263 1 + G T UCEC 24890260 + 24890240 24890280 41 CCCCGGTCACAATGGTCTGCCTGGAAGAGATGGACGAGACG CCCCGGTCACAATGGTCTGCCTGTAAGAGATGGACGAGACG < 41bp 0.758689948637248 0.373344477192408 0.33325613 0.24861076 prediction 0.517379897274497 Functional Loss - C1QTNF9 ENSG00000240654 CDS Human protein_coding chr13:24890260 chr13:24890263 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_62608 0 0 0 0 1 C1QTNF9 chr13:24890307 5'GT 24890307 Upstream 45bp
chr5 161116329 161116329 1 + C T BRCA 161116327 + 161116307 161116347 41 TGGATGGGCATGCTTGTCCACTCAAGTTTGGGAGCTGTAAG TGGATGGGCATGCTTGTCCACTTAAGTTTGGGAGCTGTAAG < 41bp 0.758685295106082 0.472564761222458 0.44746563 0.3480282 prediction 0.517370590212163 Functional Loss - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161116327 chr5:161116329 synonymous SNV . 0 23 hm5C_associated_SNPs_62610 0 0 0 0 2 GABRA6 chr5:161116260 3'AG 161116260 Downstream 70bp
chr5 161116329 161116329 1 + C T BRCA 161116327 + 161116307 161116347 41 TGGATGGGCATGCTTGTCCACTCAAGTTTGGGAGCTGTAAG TGGATGGGCATGCTTGTCCACTTAAGTTTGGGAGCTGTAAG < 41bp 0.758685295106082 0.472564761222458 0.44746563 0.3480282 prediction 0.517370590212163 Functional Loss - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161116327 chr5:161116329 synonymous SNV . 0 23 hm5C_associated_SNPs_62610 0 0 0 0 2 GABRA6 chr5:161116342 5'GT 161116342 Upstream 14bp
chr5 161116331 161116331 1 + A C COAD 161116327 + 161116307 161116347 41 TGGATGGGCATGCTTGTCCACTCAAGTTTGGGAGCTGTAAG TGGATGGGCATGCTTGTCCACTCACGTTTGGGAGCTGTAAG < 41bp 0.758685295106082 0.339347808682282 0.44746563 0.11953783 prediction 0.517370590212163 Functional Loss - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161116327 chr5:161116331 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_62611 0 0 0 0 2 GABRA6 chr5:161116260 3'AG 161116260 Downstream 72bp
chr5 161116331 161116331 1 + A C COAD 161116327 + 161116307 161116347 41 TGGATGGGCATGCTTGTCCACTCAAGTTTGGGAGCTGTAAG TGGATGGGCATGCTTGTCCACTCACGTTTGGGAGCTGTAAG < 41bp 0.758685295106082 0.339347808682282 0.44746563 0.11953783 prediction 0.517370590212163 Functional Loss - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161116327 chr5:161116331 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_62611 0 0 0 0 2 GABRA6 chr5:161116342 5'GT 161116342 Upstream 12bp
chr12 81102694 81102694 1 + G T LUSC 81102691 + 81102671 81102711 41 TCCATCGTGGACAGTATTTCCTCGGAGGAACGCAAACTCCC TCCATCGTGGACAGTATTTCCTCTGAGGAACGCAAACTCCC < 41bp 0.904170200183437 0.645486762025348 0.20084792 0.19153723 prediction 0.517366876316178 Functional Loss - MYF6 ENSG00000111046 CDS Human protein_coding chr12:81102691 chr12:81102694 synonymous SNV . 0 24 hm5C_associated_SNPs_62612 0 0 0 0 1 MYF6 chr12:81102621 3'AG 81102621 Downstream 74bp
chr17 34171487 34171487 1 + G T LIHC 34171485 + 34171465 34171505 41 CATTTCTACCTTGCAGATTTCCGGGGGAGAGGCTACGGTGG CATTTCTACCTTGCAGATTTCCTGGGGAGAGGCTACGGTGG < 41bp 0.758676753767503 0.405479713514812 0.93870056 0.84928 prediction 0.517353507535005 Functional Loss - TAF15 ENSG00000172660 CDS Human other chr17:34171485 chr17:34171487 nonsynonymous SNV 0.988 0 23 hm5C_associated_SNPs_62613 0 0 1 0 1 TAF15 chr17:34171481 3'AG 34171481 Downstream 7bp
chr19 50304245 50304245 1 + A C UCEC 50304241 + 50304221 50304261 41 CTCCAGGCCCCTGCCTGTCACGAGAACATGGTGAAGGTTGG CTCCAGGCCCCTGCCTGTCACGAGCACATGGTGAAGGTTGG < 41bp 0.758676555431317 0.350713845275485 0.8625854 0.3879189 prediction 0.517353110862633 Functional Loss - AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50304241 chr19:50304245 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_62614 0 0 1 0 3 AP2A1 chr19:50304218 3'AG 50304218 Downstream 28bp
chr19 50304245 50304245 1 + A C UCEC 50304241 + 50304221 50304261 41 CTCCAGGCCCCTGCCTGTCACGAGAACATGGTGAAGGTTGG CTCCAGGCCCCTGCCTGTCACGAGCACATGGTGAAGGTTGG < 41bp 0.758676555431317 0.350713845275485 0.8625854 0.3879189 prediction 0.517353110862633 Functional Loss - AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50304241 chr19:50304245 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_62614 0 0 1 0 3 AP2A1 chr19:50304256 5'GT 50304256 Upstream 12bp
chr19 50304245 50304245 1 + A C UCEC 50304241 + 50304221 50304261 41 CTCCAGGCCCCTGCCTGTCACGAGAACATGGTGAAGGTTGG CTCCAGGCCCCTGCCTGTCACGAGCACATGGTGAAGGTTGG < 41bp 0.758676555431317 0.350713845275485 0.8625854 0.3879189 prediction 0.517353110862633 Functional Loss - AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50304241 chr19:50304245 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_62614 0 0 1 0 3 AP2A1 chr19:50304315 5'GT 50304315 Upstream 71bp
chr7 2687177 2687177 1 + G C ESCA 2687176 + 2687156 2687196 41 GCTGCAGGGCCTGCTGGAGACGCTGCTGGGCTACACGGCCG GCTGCAGGGCCTGCTGGAGACCCTGCTGGGCTACACGGCCG < 41bp 0.758654689404338 0.451774642429086 0.4651674 0.17994985 prediction 0.517309378808675 Functional Loss - TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2687176 chr7:2687177 synonymous SNV . 0 22 hm5C_associated_SNPs_62622 0 0 0 0 1 TTYH3 chr7:2687272 5'GT 2687272 Upstream 96bp
chr5 147807450 147807450 1 + C T UCEC 147807448 + 147807428 147807468 41 GCAGTCTAATGAAGACTACCCTCGGAGGCCCCTAACCAGGG GCAGTCTAATGAAGACTACCCTTGGAGGCCCCTAACCAGGG < 41bp 0.78112084622501 0.522475472373332 0.2523566 0.16511267 prediction 0.517290747703357 Functional Loss - FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147807448 chr5:147807450 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_62625 0 0 0 0 1 FBXO38 chr5:147807510 5'GT 147807510 Upstream 61bp
chr8 92086139 92086139 1 + G T UCEC 92086137 + 92086117 92086157 41 TATCAAAAGCACAAAAGAGACGGGTATGAAAGTCATGTCAC TATCAAAAGCACAAAAGAGACGTGTATGAAAGTCATGTCAC < 41bp 0.769368053538859 0.51072527606809 0.31687373 0.20359725 prediction 0.517285554941538 Functional Loss - OTUD6B ENSG00000155100 CDS Human protein_coding chr8:92086137 chr8:92086139 synonymous SNV . 0 23 hm5C_associated_SNPs_62626 0 0 1 0 2 OTUD6B chr8:92086059 3'AG 92086059 Downstream 81bp
chr8 92086139 92086139 1 + G T UCEC 92086137 + 92086117 92086157 41 TATCAAAAGCACAAAAGAGACGGGTATGAAAGTCATGTCAC TATCAAAAGCACAAAAGAGACGTGTATGAAAGTCATGTCAC < 41bp 0.769368053538859 0.51072527606809 0.31687373 0.20359725 prediction 0.517285554941538 Functional Loss - OTUD6B ENSG00000155100 CDS Human protein_coding chr8:92086137 chr8:92086139 synonymous SNV . 0 23 hm5C_associated_SNPs_62626 0 0 1 0 2 OTUD6B chr8:92086139 5'GT 92086139 Upstream 1bp
chr19 55502020 55502020 1 + G T UCEC 55502017 + 55501997 55502037 41 TGTGAGGGCTTGAGGTACCCCGAGTGTAAACTGCAGACCTT TGTGAGGGCTTGAGGTACCCCGATTGTAAACTGCAGACCTT < 41bp 0.758642045579478 0.360586907725892 0.7765857 0.21457988 prediction 0.517284091158956 Functional Loss - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55502017 chr19:55502020 nonsynonymous SNV 0.037 0 24 hm5C_associated_SNPs_62627 0 0 0 0 1 NLRP2 chr19:55502040 5'GT 55502040 Upstream 21bp
chr2 12863597 12863597 1 + C T STAD 12863595 + 12863575 12863615 41 AGACTGTTCTACCAGATTGCCTCGGCAGTGGCCCACTGCCA AGACTGTTCTACCAGATTGCCTTGGCAGTGGCCCACTGCCA < 41bp 0.758638095161576 0.485908055397039 0.13794458 0.17222267 prediction 0.517276190323152 Functional Loss - TRIB2 ENSG00000071575 CDS Human protein_coding chr2:12863595 chr2:12863597 nonsynonymous SNV 0.960 1 23 hm5C_associated_SNPs_62629 0 0 1 0 1 TRIB2 chr2:12863678 5'GT 12863678 Upstream 82bp
chr17 40705280 40705280 1 + G C LUSC 40705279 + 40705259 40705299 41 CCGTGGCCGCTGCCCGGGAACGCGTGACTGAGGGCCGCGTG CCGTGGCCGCTGCCCGGGAACCCGTGACTGAGGGCCGCGTG < 41bp 0.857901410938996 0.599264712772238 0.4279114 0.21257055 prediction 0.517273396333517 Functional Loss - HSD17B1 ENSG00000108786 CDS Human protein_coding chr17:40705279 chr17:40705280 nonsynonymous SNV 0.053 2 22 hm5C_associated_SNPs_62630 0 0 0 0 1 HSD17B1 chr17:40705309 5'GT 40705309 Upstream 30bp
chr1 22336254 22336254 1 + C T STAD 22336252 + 22336232 22336272 41 AGGATGGTGGCTGGCAGGTCCACGGTGTGACCAGCTTTGTT AGGATGGTGGCTGGCAGGTCCATGGTGTGACCAGCTTTGTT < 41bp 0.769402003932025 0.510769373016151 0.21040404 0.1389387 prediction 0.517265261831748 Functional Loss - CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336252 chr1:22336254 synonymous SNV . 0 23 hm5C_associated_SNPs_62633 0 0 0 0 1 CELA3A chr1:22336350 5'GT 22336350 Upstream 97bp
chr22 46096203 46096203 1 + C T COAD 46096201 + 46096181 46096221 41 GTTTTTAGGCAACATTGCCTCACGGAATGAAGATTCCCAGT GTTTTTAGGCAACATTGCCTCATGGAATGAAGATTCCCAGT < 41bp 0.78818732021353 0.529555554415467 0.18280861 0.2378369 prediction 0.517263531596126 Functional Loss - ATXN10 ENSG00000130638 CDS Human protein_coding chr22:46096201 chr22:46096203 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_62634 0 0 1 0 2 ATXN10 chr22:46096162 3'AG 46096162 Downstream 42bp
chr22 46096203 46096203 1 + C T COAD 46096201 + 46096181 46096221 41 GTTTTTAGGCAACATTGCCTCACGGAATGAAGATTCCCAGT GTTTTTAGGCAACATTGCCTCATGGAATGAAGATTCCCAGT < 41bp 0.78818732021353 0.529555554415467 0.18280861 0.2378369 prediction 0.517263531596126 Functional Loss - ATXN10 ENSG00000130638 CDS Human protein_coding chr22:46096201 chr22:46096203 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_62634 0 0 1 0 2 ATXN10 chr22:46096258 5'GT 46096258 Upstream 56bp
chrX 152128356 152128356 1 + A T rs192167214 152128352 + 152128332 152128372 41 GAGACCCAGCTGTACCCACTCAGCAACCTGCAGATCCCAGT GAGACCCAGCTGTACCCACTCAGCTACCTGCAGATCCCAGT < 41bp 0.758631230434181 0.450032801349048 0.25255138 0.23099753 prediction 0.517262460868362 Functional Loss - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152128352 chrX:152128356 nonsynonymous SNV 0.025 3 25 hm5C_associated_SNPs_62635 0 0 0 0 1 ZNF185 chrX:152128440 5'GT 152128440 Upstream 85bp
chr22 27019252 27019252 1 + G C BLCA 27019251 + 27019231 27019271 41 CGGCGGCACGAGTTCACGGCCGAGTGCCCCAGCGTGCTGGA CGGCGGCACGAGTTCACGGCCCAGTGCCCCAGCGTGCTGGA < 41bp 0.758614388946331 0.437478521510411 0.60119313 0.1872741 prediction 0.517228777892662 Functional Loss - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27019251 chr22:27019252 nonsynonymous SNV 0.681 1 22 hm5C_associated_SNPs_62637 0 0 0 0 1 CRYBA4 chr22:27019198 3'AG 27019198 Downstream 55bp
chr6 167594182 167594182 1 + A C rs1537172 167594178 + 167594158 167594198 41 ATTTCTCAGCCGCGTTCAAGCTGAAGAGTTCGCCAGTTCTT ATTTCTCAGCCGCGTTCAAGCTGACGAGTTCGCCAGTTCTT < 41bp 0.758608206890014 0.368335181435417 0.24489924 0.15376991 prediction 0.517216413780028 Functional Loss - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167594178 chr6:167594182 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_62638 0 0 0 0 2 TCP10L2 chr6:167594121 3'AG 167594121 Downstream 62bp
chr6 167594182 167594182 1 + A C rs1537172 167594178 + 167594158 167594198 41 ATTTCTCAGCCGCGTTCAAGCTGAAGAGTTCGCCAGTTCTT ATTTCTCAGCCGCGTTCAAGCTGACGAGTTCGCCAGTTCTT < 41bp 0.758608206890014 0.368335181435417 0.24489924 0.15376991 prediction 0.517216413780028 Functional Loss - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167594178 chr6:167594182 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_62638 0 0 0 0 2 TCP10L2 chr6:167594221 5'GT 167594221 Upstream 40bp
chr19 8486873 8486873 1 + C T UCS 8486871 + 8486851 8486891 41 AGGGATGGCCGGCTCCTCTCCACCGTCATCCGTGCCTTGGA AGGGATGGCCGGCTCCTCTCCATCGTCATCCGTGCCTTGGA < 41bp 0.773524472868424 0.514927160644343 0.10386354 0.041635066 prediction 0.517194624448161 Functional Loss - MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8486871 chr19:8486873 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_62641 0 0 0 0 1 MARCH2 chr19:8486900 5'GT 8486900 Upstream 28bp
chr7 129066403 129066403 1 + A C UCEC 129066399 + 129066379 129066419 41 GGGCCCTTCAAGCCTAATTACTACAGGTGCCTTGGGCTCCC GGGCCCTTCAAGCCTAATTACTACCGGTGCCTTGGGCTCCC < 41bp 0.758587388035195 0.325749779737342 0.9410001 0.10345706 prediction 0.517174776070389 Functional Loss - AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129066399 chr7:129066403 synonymous SNV . 0 25 hm5C_associated_SNPs_62643 0 0 0 0 1 AHCYL2 chr7:129066404 5'GT 129066404 Upstream 2bp
chr20 47700588 47700588 1 + C T UCEC 47700586 + 47700566 47700606 41 CCAAAAGAACATCTTTTAGTCTCGATTCCTCTCTTGATTAA CCAAAAGAACATCTTTTAGTCTTGATTCCTCTCTTGATTAA < 41bp 0.816226133109602 0.557641259476438 0.289737 0.029349118 prediction 0.517169747266327 Functional Loss - CSE1L ENSG00000124207 CDS Human protein_coding chr20:47700586 chr20:47700588 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_62644 0 0 1 0 2 CSE1L chr20:47700563 3'AG 47700563 Downstream 26bp
chr20 47700588 47700588 1 + C T UCEC 47700586 + 47700566 47700606 41 CCAAAAGAACATCTTTTAGTCTCGATTCCTCTCTTGATTAA CCAAAAGAACATCTTTTAGTCTTGATTCCTCTCTTGATTAA < 41bp 0.816226133109602 0.557641259476438 0.289737 0.029349118 prediction 0.517169747266327 Functional Loss - CSE1L ENSG00000124207 CDS Human protein_coding chr20:47700586 chr20:47700588 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_62644 0 0 1 0 2 CSE1L chr20:47700623 5'GT 47700623 Upstream 36bp
chr12 53509339 53509339 1 + G T rs3219199 53509337 + 53509317 53509357 41 CGACGGGCCTGGGCTGTGCGCTGCTAGCCGCCCACGCCGTG CGACGGGCCTGGGCTGTGCGCTTCTAGCCGCCCACGCCGTG < 41bp 0.758582893554927 0.403815505263921 0.063766986 0.10691789 prediction 0.517165787109854 Functional Loss - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53509337 chr12:53509339 synonymous SNV . 0 23 hm5C_associated_SNPs_62645 0 0 0 0 1 SOAT2 chr12:53509438 5'GT 53509438 Upstream 100bp
chr16 53488672 53488672 1 + C T COAD 53488670 + 53488650 53488690 41 GAGGAGGAAATTGGGACTCTCTCAAGGTGTCTGAACGCTGG GAGGAGGAAATTGGGACTCTCTTAAGGTGTCTGAACGCTGG < 41bp 0.819480632746406 0.56089821499397 0.42009452 0.47664312 prediction 0.517164835504873 Functional Loss - RBL2 ENSG00000103479 CDS Human protein_coding chr16:53488670 chr16:53488672 nonsynonymous SNV 0.880 1 23 hm5C_associated_SNPs_62646 0 0 1 0 1 RBL2 chr16:53488754 5'GT 53488754 Upstream 83bp
chr19 36633865 36633865 1 + C T ACC 36633863 + 36633843 36633883 41 CATTCTCAATAAGGTTGTGACACGACGTAAGTGACCGGGGT CATTCTCAATAAGGTTGTGACATGACGTAAGTGACCGGGGT < 41bp 0.766223735549252 0.507642007042777 0.13858849 0.21658736 prediction 0.51716345701295 Functional Loss - CAPNS1 ENSG00000126247 CDS Human protein_coding chr19:36633863 chr19:36633865 stopgain 0.973 1 23 hm5C_associated_SNPs_62647 0 0 0 0 2 CAPNS1 chr19:36633811 3'AG 36633811 Downstream 55bp
chr19 36633865 36633865 1 + C T ACC 36633863 + 36633843 36633883 41 CATTCTCAATAAGGTTGTGACACGACGTAAGTGACCGGGGT CATTCTCAATAAGGTTGTGACATGACGTAAGTGACCGGGGT < 41bp 0.766223735549252 0.507642007042777 0.13858849 0.21658736 prediction 0.51716345701295 Functional Loss - CAPNS1 ENSG00000126247 CDS Human protein_coding chr19:36633863 chr19:36633865 stopgain 0.973 1 23 hm5C_associated_SNPs_62647 0 0 0 0 2 CAPNS1 chr19:36633868 5'GT 36633868 Upstream 4bp
chr7 86991139 86991139 1 + G T UCEC 86991136 + 86991116 86991156 41 CTGCAAGGTTCCAGGAATTACTAGAGACTCCATTATGAATT CTGCAAGGTTCCAGGAATTACTATAGACTCCATTATGAATT < 41bp 0.758578657181549 0.395902649176849 0.6249362 0.19116595 prediction 0.517157314363098 Functional Loss - CROT ENSG00000005469 CDS Human protein_coding chr7:86991136 chr7:86991139 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_62648 0 0 1 0 2 CROT chr7:86991044 3'AG 86991044 Downstream 96bp
chr7 86991139 86991139 1 + G T UCEC 86991136 + 86991116 86991156 41 CTGCAAGGTTCCAGGAATTACTAGAGACTCCATTATGAATT CTGCAAGGTTCCAGGAATTACTATAGACTCCATTATGAATT < 41bp 0.758578657181549 0.395902649176849 0.6249362 0.19116595 prediction 0.517157314363098 Functional Loss - CROT ENSG00000005469 CDS Human protein_coding chr7:86991136 chr7:86991139 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_62648 0 0 1 0 2 CROT chr7:86991168 5'GT 86991168 Upstream 30bp
chr5 137522065 137522065 1 + G T ESCA 137522062 + 137522042 137522082 41 GAGAGCTTGTTGCCACAGCACTGGGGCAGGAAAACTTCGTC GAGAGCTTGTTGCCACAGCACTGTGGCAGGAAAACTTCGTC < 41bp 0.758569419485032 0.374620597087068 0.23469141 0.03667438 prediction 0.517138838970064 Functional Loss - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137522062 chr5:137522065 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_62650 0 0 1 0 2 KIF20A chr5:137521983 3'AG 137521983 Downstream 83bp
chr5 137522065 137522065 1 + G T ESCA 137522062 + 137522042 137522082 41 GAGAGCTTGTTGCCACAGCACTGGGGCAGGAAAACTTCGTC GAGAGCTTGTTGCCACAGCACTGTGGCAGGAAAACTTCGTC < 41bp 0.758569419485032 0.374620597087068 0.23469141 0.03667438 prediction 0.517138838970064 Functional Loss - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137522062 chr5:137522065 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_62650 0 0 1 0 2 KIF20A chr5:137522120 5'GT 137522120 Upstream 56bp
chr18 59206373 59206373 1 + G T LUAD 59206371 + 59206351 59206391 41 TGTCTGTGAGAACGCCAAGGCAGGACAGGTAAGGTGGCCTG TGTCTGTGAGAACGCCAAGGCATGACAGGTAAGGTGGCCTG < 41bp 0.870905824871193 0.612348836292995 0.6731509 0.18836686 prediction 0.517113977156396 Functional Loss - CDH20 ENSG00000101542 CDS Human protein_coding chr18:59206371 chr18:59206373 stopgain 0.868 1 23 hm5C_associated_SNPs_62652 0 0 0 0 1 CDH20 chr18:59206378 5'GT 59206378 Upstream 6bp
chr19 12856282 12856282 1 + A C STAD 12856278 + 12856258 12856298 41 GCATGGGCAAGAAGATGATGCAGGAGGCCATGAGCGCATTT GCATGGGCAAGAAGATGATGCAGGCGGCCATGAGCGCATTT < 41bp 0.91522296923954 0.65666817396194 0.78807753 0.86050344 prediction 0.517109590555201 Functional Loss - ASNA1 ENSG00000198356 CDS Human protein_coding chr19:12856278 chr19:12856282 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_62655 0 0 1 0 2 ASNA1 chr19:12856191 3'AG 12856191 Downstream 92bp
chr19 12856282 12856282 1 + A C STAD 12856278 + 12856258 12856298 41 GCATGGGCAAGAAGATGATGCAGGAGGCCATGAGCGCATTT GCATGGGCAAGAAGATGATGCAGGCGGCCATGAGCGCATTT < 41bp 0.91522296923954 0.65666817396194 0.78807753 0.86050344 prediction 0.517109590555201 Functional Loss - ASNA1 ENSG00000198356 CDS Human protein_coding chr19:12856278 chr19:12856282 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_62655 0 0 1 0 2 ASNA1 chr19:12856339 5'GT 12856339 Upstream 58bp
chr3 16260957 16260957 1 + G T HNSC 16260955 + 16260935 16260975 41 GCTTGCAGCTGCAAAGGAGACTGGGTTGTCGGACATTCCAC GCTTGCAGCTGCAAAGGAGACTTGGTTGTCGGACATTCCAC < 41bp 0.879447765198587 0.620896001475709 0.45810056 0.18941578 prediction 0.517103527445756 Functional Loss - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16260955 chr3:16260957 synonymous SNV . 0 23 hm5C_associated_SNPs_62656 0 0 0 0 1 GALNT15 chr3:16260910 3'AG 16260910 Downstream 48bp
chr22 44585010 44585010 1 + C T HNSC 44585008 + 44584988 44585028 41 CTCCAGAGAGGCTGGCGGCGCTCAAGCTGGAAGCAGAGGAC CTCCAGAGAGGCTGGCGGCGCTTAAGCTGGAAGCAGAGGAC < 41bp 0.771623104930257 0.513079106843368 0.31697243 0.37319207 prediction 0.517087996173778 Functional Loss - PARVG ENSG00000138964 CDS Human protein_coding chr22:44585008 chr22:44585010 synonymous SNV . 0 23 hm5C_associated_SNPs_62660 0 0 0 0 1 PARVG chr22:44584994 3'AG 44584994 Downstream 17bp
chr10 102509561 102509561 1 + C T PAAD 102509559 + 102509539 102509579 41 TTGTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGC TTGTGAACGGCCGGCCCCTACCTGACGTGGTGAGGCAGCGC < 41bp 0.768760541186122 0.510219743998091 0.5310422 0.075442374 prediction 0.517081594376062 Functional Loss - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102509559 chr10:102509561 synonymous SNV . 0 23 hm5C_associated_SNPs_62661 0 0 0 0 2 PAX2 chr10:102509503 3'AG 102509503 Downstream 59bp
chr10 102509561 102509561 1 + C T PAAD 102509559 + 102509539 102509579 41 TTGTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGC TTGTGAACGGCCGGCCCCTACCTGACGTGGTGAGGCAGCGC < 41bp 0.768760541186122 0.510219743998091 0.5310422 0.075442374 prediction 0.517081594376062 Functional Loss - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102509559 chr10:102509561 synonymous SNV . 0 23 hm5C_associated_SNPs_62661 0 0 0 0 2 PAX2 chr10:102509506 3'AG 102509506 Downstream 56bp
chr17 4648601 4648601 1 + C T LUSC 4648599 + 4648579 4648619 41 GCGGTGGCCACTGGAGGGGGCACCAGCCCTCCCCAGCCCAA GCGGTGGCCACTGGAGGGGGCATCAGCCCTCCCCAGCCCAA < 41bp 0.7672037910365 0.508665404631415 0.4597999 0.6187899 prediction 0.517076772810169 Functional Loss - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4648599 chr17:4648601 nonsynonymous SNV 0.885 3 23 hm5C_associated_SNPs_62662 0 0 0 0 2 ZMYND15 chr17:4648510 3'AG 4648510 Downstream 92bp
chr17 4648601 4648601 1 + C T LUSC 4648599 + 4648579 4648619 41 GCGGTGGCCACTGGAGGGGGCACCAGCCCTCCCCAGCCCAA GCGGTGGCCACTGGAGGGGGCATCAGCCCTCCCCAGCCCAA < 41bp 0.7672037910365 0.508665404631415 0.4597999 0.6187899 prediction 0.517076772810169 Functional Loss - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4648599 chr17:4648601 nonsynonymous SNV 0.885 3 23 hm5C_associated_SNPs_62662 0 0 0 0 2 ZMYND15 chr17:4648670 5'GT 4648670 Upstream 70bp
chr16 84494379 84494379 1 + G T SARC 84494377 + 84494357 84494397 41 ATGTCCGCGGCCATCATCATCAGCGGGACCCTCTTTATCTT ATGTCCGCGGCCATCATCATCATCGGGACCCTCTTTATCTT < 41bp 0.758532270917724 0.402776542745365 0.85312474 0.14161232 prediction 0.517064541835448 Functional Loss - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84494377 chr16:84494379 nonsynonymous SNV 0.276 2 23 hm5C_associated_SNPs_62664 0 0 0 0 1 ATP2C2 chr16:84494407 5'GT 84494407 Upstream 29bp
chr19 49640002 49640002 1 + G T rs2303053 49640000 + 49639980 49640020 41 GGATTGGGAGCGGTCTGCCCCTGCGGGCTCCATACCACCCC GGATTGGGAGCGGTCTGCCCCTTCGGGCTCCATACCACCCC < 41bp 0.758525750370044 0.413015834790466 0.6996029 0.20180479 prediction 0.517051500740089 Functional Loss - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49640000 chr19:49640002 nonsynonymous SNV 0.875 0 23 hm5C_associated_SNPs_62666 0 0 0 0 1 PPFIA3 chr19:49639981 3'AG 49639981 Downstream 22bp
chr4 55139781 55139781 1 + G T UCEC 55139779 + 55139759 55139799 41 ACGGAGATCCACTCCCGAGACAGGAGTACCGTGGAGGGCCG ACGGAGATCCACTCCCGAGACATGAGTACCGTGGAGGGCCG < 41bp 0.758504773095026 0.459506644489353 0.428505 0.10312843 prediction 0.517009546190053 Functional Loss - PDGFRA ENSG00000134853 CDS Human protein_coding chr4:55139779 chr4:55139781 nonsynonymous SNV 0.680 0 23 hm5C_associated_SNPs_62669 0 0 0 0 1 PDGFRA chr4:55139704 3'AG 55139704 Downstream 78bp
chr11 119025013 119025013 1 + C T LGG 119025011 + 119024991 119025031 41 GATCCTGGTTAATGGAAGGCCACGGGAGCTGAGGACCTTCC GATCCTGGTTAATGGAAGGCCATGGGAGCTGAGGACCTTCC < 41bp 0.776887909111939 0.518392432818881 0.68751776 0.67073387 prediction 0.516990952586116 Functional Loss - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119025011 chr11:119025013 nonsynonymous SNV 0.685 5 23 hm5C_associated_SNPs_62670 0 0 0 0 2 ABCG4 chr11:119024970 3'AG 119024970 Downstream 44bp
chr11 119025013 119025013 1 + C T LGG 119025011 + 119024991 119025031 41 GATCCTGGTTAATGGAAGGCCACGGGAGCTGAGGACCTTCC GATCCTGGTTAATGGAAGGCCATGGGAGCTGAGGACCTTCC < 41bp 0.776887909111939 0.518392432818881 0.68751776 0.67073387 prediction 0.516990952586116 Functional Loss - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119025011 chr11:119025013 nonsynonymous SNV 0.685 5 23 hm5C_associated_SNPs_62670 0 0 0 0 2 ABCG4 chr11:119025102 5'GT 119025102 Upstream 90bp
chrX 155252871 155252871 1 + C T CESC 155252869 + 155252849 155252889 41 ACACTGAGGTAGCCGAGCCTCTCAAGGCAGGTGAGCTGGGT ACACTGAGGTAGCCGAGCCTCTTAAGGCAGGTGAGCTGGGT < 41bp 0.771090516708341 0.51260176978978 0.46787524 0.2463254 prediction 0.516977493837121 Functional Loss - WASIR1;DDX11L16 ENSG00000182484;ENSG00000270726 ncRNA_exonic Human other chrX:155252869 chrX:155252871 . . 0 23 hm5C_associated_SNPs_62671 0 0 1 0 1 WASIR1;DDX11L16 chrX:155252878 5'GT 155252878 Upstream 8bp
chr7 44152432 44152432 1 + C T LUAD 44152430 + 44152410 44152450 41 TCACCTTGACCGAGCCCTACCGCGGAGGCTGCCAAGCCCAG TCACCTTGACCGAGCCCTACCGTGGAGGCTGCCAAGCCCAG < 41bp 0.758480252159017 0.498831665734901 0.7010984 0.40003628 prediction 0.516960504318033 Functional Loss - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44152430 chr7:44152432 synonymous SNV . 0 23 hm5C_associated_SNPs_62673 0 0 0 0 1 AEBP1 chr7:44152508 5'GT 44152508 Upstream 77bp
chr4 106888415 106888415 1 + C T COAD 106888413 + 106888393 106888433 41 CTGCACGCTTGGTGCTACCTCTCGGCCGCCTCATGCATTCA CTGCACGCTTGGTGCTACCTCTTGGCCGCCTCATGCATTCA < 41bp 0.811063042984977 0.552588170133555 0.07520962 0.053498566 prediction 0.516949745702845 Functional Loss - NPNT ENSG00000168743 CDS Human protein_coding chr4:106888413 chr4:106888415 synonymous SNV . 0 23 hm5C_associated_SNPs_62674 0 0 1 0 1 NPNT chr4:106888345 3'AG 106888345 Downstream 71bp
chr7 28610154 28610154 1 + G C UCS 28610153 + 28610133 28610173 41 CCTTCCACCAACCGCCAGATCGGGTAAGGAGCCCTCCTTGG CCTTCCACCAACCGCCAGATCCGGTAAGGAGCCCTCCTTGG < 41bp 0.797881421924255 0.539406883280153 0.89094627 0.72661906 prediction 0.516949077288203 Functional Loss - CREB5 ENSG00000146592 CDS Human protein_coding chr7:28610153 chr7:28610154 nonsynonymous SNV 0.994 2 22 hm5C_associated_SNPs_62675 0 0 0 0 1 CREB5 chr7:28610155 5'GT 28610155 Upstream 2bp
chr11 47298301 47298301 1 + G T UCEC 47298298 + 47298278 47298318 41 GACAGGTGGTGCTACAGTCCCGAGACTACAATGCACTCTCC GACAGGTGGTGCTACAGTCCCGATACTACAATGCACTCTCC < 41bp 0.75846764805103 0.381547057787091 0.9315944 0.91275036 prediction 0.51693529610206 Functional Loss - MADD ENSG00000110514 CDS Human protein_coding chr11:47298298 chr11:47298301 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_62678 0 0 1 0 1 MADD chr11:47298283 3'AG 47298283 Downstream 19bp
chr2 105716151 105716151 1 + C T STAD 105716149 + 105716129 105716169 41 TGGACTACTTACTACTGATCCACGTGTGAGGGAACGGAAGA TGGACTACTTACTACTGATCCATGTGTGAGGGAACGGAAGA < 41bp 0.763381453400367 0.504916285437899 0.14555627 0.10252121 prediction 0.516930335924936 Functional Loss - MRPS9 ENSG00000135972 CDS Human protein_coding chr2:105716149 chr2:105716151 nonsynonymous SNV 0.007 4 23 hm5C_associated_SNPs_62679 0 0 1 0 1 MRPS9 chr2:105716128 3'AG 105716128 Downstream 24bp
chr2 71894573 71894573 1 + G T LUAD 71894571 + 71894551 71894591 41 GTCTGGCTCTGCATGTGCTTCAGCAGCAGGGCCTGGTCCCG GTCTGGCTCTGCATGTGCTTCATCAGCAGGGCCTGGTCCCG < 41bp 0.819422023173876 0.560957261636575 0.2553745 0.030668378 prediction 0.516929523074602 Functional Loss - DYSF ENSG00000135636 CDS Human protein_coding chr2:71894571 chr2:71894573 nonsynonymous SNV 0.970 2 23 hm5C_associated_SNPs_62680 0 0 0 0 2 DYSF chr2:71894506 3'AG 71894506 Downstream 68bp
chr2 71894573 71894573 1 + G T LUAD 71894571 + 71894551 71894591 41 GTCTGGCTCTGCATGTGCTTCAGCAGCAGGGCCTGGTCCCG GTCTGGCTCTGCATGTGCTTCATCAGCAGGGCCTGGTCCCG < 41bp 0.819422023173876 0.560957261636575 0.2553745 0.030668378 prediction 0.516929523074602 Functional Loss - DYSF ENSG00000135636 CDS Human protein_coding chr2:71894571 chr2:71894573 nonsynonymous SNV 0.970 2 23 hm5C_associated_SNPs_62680 0 0 0 0 2 DYSF chr2:71894645 5'GT 71894645 Upstream 73bp
chr19 17972990 17972990 1 + G T THYM 17972987 + 17972967 17973007 41 GCGGCACCCACAACATGTACCGGGAATACCGGGACCTGACC GCGGCACCCACAACATGTACCGGTAATACCGGGACCTGACC < 41bp 0.911203521179256 0.652746312328402 0.884485 0.31087786 prediction 0.516914417701708 Functional Loss - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17972987 chr19:17972990 stopgain 0.990 1 24 hm5C_associated_SNPs_62682 0 0 0 0 2 RPL18A chr19:17972903 3'AG 17972903 Downstream 88bp
chr19 17972990 17972990 1 + G T THYM 17972987 + 17972967 17973007 41 GCGGCACCCACAACATGTACCGGGAATACCGGGACCTGACC GCGGCACCCACAACATGTACCGGTAATACCGGGACCTGACC < 41bp 0.911203521179256 0.652746312328402 0.884485 0.31087786 prediction 0.516914417701708 Functional Loss - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17972987 chr19:17972990 stopgain 0.990 1 24 hm5C_associated_SNPs_62682 0 0 0 0 2 RPL18A chr19:17973032 5'GT 17973032 Upstream 43bp
chr9 32784212 32784212 1 + G T LIHC 32784210 + 32784190 32784230 41 TGATGACATTAACCCGAGGACTGGGCTGGTGGTGGCCCTGG TGATGACATTAACCCGAGGACTTGGCTGGTGGTGGCCCTGG < 41bp 0.86022870319193 0.601776080385646 0.133434 0.12111664 prediction 0.516905245612568 Functional Loss - TMEM215 ENSG00000188133 CDS Human protein_coding chr9:32784210 chr9:32784212 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_62683 0 0 0 0 1 TMEM215 chr9:32784124 3'AG 32784124 Downstream 89bp
chr4 48994037 48994037 1 + G T LUSC 48994034 + 48994014 48994054 41 TATACTTCACTAAACCCAATCTGGAGTTATCAGATGTCCAA TATACTTCACTAAACCCAATCTGTAGTTATCAGATGTCCAA < 41bp 0.758446251312586 0.379159498989347 0.2657427 0.029829115 prediction 0.516892502625172 Functional Loss - CWH43 ENSG00000109182 CDS Human protein_coding chr4:48994034 chr4:48994037 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_62685 0 0 0 0 2 CWH43 chr4:48993953 3'AG 48993953 Downstream 85bp
chr4 48994037 48994037 1 + G T LUSC 48994034 + 48994014 48994054 41 TATACTTCACTAAACCCAATCTGGAGTTATCAGATGTCCAA TATACTTCACTAAACCCAATCTGTAGTTATCAGATGTCCAA < 41bp 0.758446251312586 0.379159498989347 0.2657427 0.029829115 prediction 0.516892502625172 Functional Loss - CWH43 ENSG00000109182 CDS Human protein_coding chr4:48994034 chr4:48994037 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_62685 0 0 0 0 2 CWH43 chr4:48994107 5'GT 48994107 Upstream 71bp
chr4 106888380 106888380 1 + C T STAD 106888378 + 106888358 106888398 41 GACAGTGTCGGCAGCCAAAGCCCCAGGGGGAAAAGCTGCAC GACAGTGTCGGCAGCCAAAGCCTCAGGGGGAAAAGCTGCAC < 41bp 0.820281907106903 0.561846153033817 0.3155794 0.3267719 prediction 0.516871508146172 Functional Loss - NPNT ENSG00000168743 CDS Human protein_coding chr4:106888378 chr4:106888380 nonsynonymous SNV 0.746 2 23 hm5C_associated_SNPs_62690 0 0 0 0 1 NPNT chr4:106888345 3'AG 106888345 Downstream 36bp
chr17 4621224 4621224 1 + C T LUAD 4621222 + 4621202 4621242 41 ATCCGAAAGGTGCAGTTCGCCCCGGAGAAACCCGGCCCCCA ATCCGAAAGGTGCAGTTCGCCCTGGAGAAACCCGGCCCCCA < 41bp 0.771207407198434 0.512775878216182 0.43328106 0.32882193 prediction 0.516863057964504 Functional Loss - ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4621222 chr17:4621224 nonsynonymous SNV 0.589 4 23 hm5C_associated_SNPs_62691 0 0 0 0 2 ARRB2 chr17:4621183 3'AG 4621183 Downstream 42bp
chr17 4621224 4621224 1 + C T LUAD 4621222 + 4621202 4621242 41 ATCCGAAAGGTGCAGTTCGCCCCGGAGAAACCCGGCCCCCA ATCCGAAAGGTGCAGTTCGCCCTGGAGAAACCCGGCCCCCA < 41bp 0.771207407198434 0.512775878216182 0.43328106 0.32882193 prediction 0.516863057964504 Functional Loss - ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4621222 chr17:4621224 nonsynonymous SNV 0.589 4 23 hm5C_associated_SNPs_62691 0 0 0 0 2 ARRB2 chr17:4621318 5'GT 4621318 Upstream 95bp
chr5 72383470 72383470 1 + C T LUAD 72383468 + 72383448 72383488 41 TCAGAAGGACCTAGTAAACCCACGACACTTGCAGTACAATT TCAGAAGGACCTAGTAAACCCATGACACTTGCAGTACAATT < 41bp 0.801003187894566 0.54257265035089 0.016959518 0.012858063 prediction 0.51686107508735 Functional Loss - FCHO2 ENSG00000157107 CDS Human protein_coding chr5:72383468 chr5:72383470 nonsynonymous SNV 0.532 0 23 hm5C_associated_SNPs_62692 0 0 1 0 1 FCHO2 chr5:72383416 3'AG 72383416 Downstream 55bp
chr20 43942215 43942215 1 + C T COAD 43942213 + 43942193 43942233 41 TGGGGCCTTTGTGGCCAGTGCACGACAGTGGGCTGCCTTCA TGGGGCCTTTGTGGCCAGTGCATGACAGTGGGCTGCCTTCA < 41bp 0.777347693916071 0.518919558934633 0.37543535 0.33351913 prediction 0.516856269962874 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43942213 chr20:43942215 stopgain 0.192 1 23 hm5C_associated_SNPs_62693 0 0 0 0 1 RBPJL chr20:43942245 5'GT 43942245 Upstream 31bp
chr3 129221700 129221700 1 + A T SKCM 129221696 + 129221676 129221716 41 ACCTCAAGTCCCTGGTGCAGCTGCACGTGGAGACCCAGCGC ACCTCAAGTCCCTGGTGCAGCTGCTCGTGGAGACCCAGCGC < 41bp 0.857033761299612 0.598617210565557 0.44230092 0.19427353 prediction 0.516833101468109 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129221696 chr3:129221700 nonsynonymous SNV 0.894 1 25 hm5C_associated_SNPs_62696 0 0 1 0 1 IFT122 chr3:129221725 5'GT 129221725 Upstream 26bp
chr18 29118843 29118843 1 + T C rs199681901 29118842 + 29118822 29118862 41 CACTCACAGTTTGTGAGTGTCTGCATGGCAGCGGCTGCAGG CACTCACAGTTTGTGAGTGTCCGCATGGCAGCGGCTGCAGG < 41bp 0.780819548201524 0.522416272649323 0.9107609 0.38302714 prediction 0.516806551104401 Functional Loss - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29118842 chr18:29118843 nonsynonymous SNV 0.789 0 22 hm5C_associated_SNPs_62702 3 0 1 0 1 DSG2 chr18:29118941 5'GT 29118941 Upstream 99bp
chr7 129950826 129950826 1 + C T rs147568416 129950824 + 129950804 129950844 41 AGGCCCCAGATGCCGAGGAACTCGTGAGTCACAGCTGCCTC AGGCCCCAGATGCCGAGGAACTTGTGAGTCACAGCTGCCTC < 41bp 0.758399915571443 0.493577117732444 0.35552397 0.15625554 prediction 0.516799831142886 Functional Loss - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950824 chr7:129950826 synonymous SNV . 0 23 hm5C_associated_SNPs_62705 0 0 0 0 1 CPA4 chr7:129950826 5'GT 129950826 Upstream 1bp
chr2 108998285 108998285 1 + G T LUAD 108998283 + 108998263 108998303 41 GTGATGTGGAGAAAAGTAAACGGGCACCGACTCATCAACGA GTGATGTGGAGAAAAGTAAACGTGCACCGACTCATCAACGA < 41bp 0.758399505088875 0.415764545652733 0.25644612 0.061184555 prediction 0.51679901017775 Functional Loss - SULT1C4 ENSG00000198075 CDS Human protein_coding chr2:108998283 chr2:108998285 synonymous SNV . 0 23 hm5C_associated_SNPs_62706 0 0 0 0 2 SULT1C4 chr2:108998218 3'AG 108998218 Downstream 68bp
chr2 108998285 108998285 1 + G T LUAD 108998283 + 108998263 108998303 41 GTGATGTGGAGAAAAGTAAACGGGCACCGACTCATCAACGA GTGATGTGGAGAAAAGTAAACGTGCACCGACTCATCAACGA < 41bp 0.758399505088875 0.415764545652733 0.25644612 0.061184555 prediction 0.51679901017775 Functional Loss - SULT1C4 ENSG00000198075 CDS Human protein_coding chr2:108998283 chr2:108998285 synonymous SNV . 0 23 hm5C_associated_SNPs_62706 0 0 0 0 2 SULT1C4 chr2:108998343 5'GT 108998343 Upstream 59bp
chr3 150301042 150301042 1 + A C UCEC 150301038 + 150301018 150301058 41 AAGCAGCAACTGGAAAACAGCTAGAAAAAAATCAGGTACTT AAGCAGCAACTGGAAAACAGCTAGCAAAAAATCAGGTACTT < 41bp 0.758399106829018 0.357622802191763 0.46363142 0.25906557 prediction 0.516798213658036 Functional Loss - EIF2A ENSG00000144895 CDS Human protein_coding chr3:150301038 chr3:150301042 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_62707 0 0 0 0 2 EIF2A chr3:150300987 3'AG 150300987 Downstream 56bp
chr3 150301042 150301042 1 + A C UCEC 150301038 + 150301018 150301058 41 AAGCAGCAACTGGAAAACAGCTAGAAAAAAATCAGGTACTT AAGCAGCAACTGGAAAACAGCTAGCAAAAAATCAGGTACTT < 41bp 0.758399106829018 0.357622802191763 0.46363142 0.25906557 prediction 0.516798213658036 Functional Loss - EIF2A ENSG00000144895 CDS Human protein_coding chr3:150301038 chr3:150301042 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_62707 0 0 0 0 2 EIF2A chr3:150301052 5'GT 150301052 Upstream 11bp
chr16 77228297 77228297 1 + C T CESC 77228295 + 77228275 77228315 41 CGTGGCCATGTCACGGACTTCTCAGTCAGCAGCCCAGCTGC CGTGGCCATGTCACGGACTTCTTAGTCAGCAGCCCAGCTGC < 41bp 0.758397558948464 0.492380980372972 0.22294831 0.07467729 prediction 0.516795117896928 Functional Loss - MON1B ENSG00000103111 CDS Human protein_coding chr16:77228295 chr16:77228297 stopgain 0.992 1 23 hm5C_associated_SNPs_62708 0 0 1 0 1 MON1B chr16:77228232 3'AG 77228232 Downstream 66bp
chr11 63743745 63743745 1 + G T UCEC 63743743 + 63743723 63743763 41 CTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCTGTCAC CTTCGTGACCTTCCTCCTGCCATCGGGCTGGATCCTGTCAC < 41bp 0.876666865665547 0.618285197572506 0.8705032 0.2759382 prediction 0.516763336186083 Functional Loss - COX8A ENSG00000176340 CDS Human protein_coding chr11:63743743 chr11:63743745 nonsynonymous SNV 0.504 0 23 hm5C_associated_SNPs_62709 0 0 1 0 1 COX8A chr11:63743697 3'AG 63743697 Downstream 49bp
chr17 40720956 40720956 1 + A T COAD 40720952 + 40720932 40720972 41 GCTGAGCAGAAGAGGAGGGACGCCATCAAGGTGAACAGGGA GCTGAGCAGAAGAGGAGGGACGCCTTCAAGGTGAACAGGGA < 41bp 0.879201339730129 0.620839375534011 0.684097 0.47478262 prediction 0.516723928392236 Functional Loss - MLX ENSG00000108788 CDS Human protein_coding chr17:40720952 chr17:40720956 nonsynonymous SNV 0.996 5 25 hm5C_associated_SNPs_62711 0 0 1 0 1 MLX chr17:40720961 5'GT 40720961 Upstream 6bp
chr5 115469813 115469813 1 + C T SKCM 115469811 + 115469791 115469831 41 CCTTCAGATGGCTCACTCTGCTCAAGCAAAACTAAAATCTC CCTTCAGATGGCTCACTCTGCTTAAGCAAAACTAAAATCTC < 41bp 0.80260203229152 0.544250837234039 0.044228613 0.019066513 prediction 0.516702390114962 Functional Loss - COMMD10 ENSG00000145781 CDS Human protein_coding chr5:115469811 chr5:115469813 stopgain 0.999 1 23 hm5C_associated_SNPs_62712 0 0 1 0 2 COMMD10 chr5:115469765 3'AG 115469765 Downstream 49bp
chr5 115469813 115469813 1 + C T SKCM 115469811 + 115469791 115469831 41 CCTTCAGATGGCTCACTCTGCTCAAGCAAAACTAAAATCTC CCTTCAGATGGCTCACTCTGCTTAAGCAAAACTAAAATCTC < 41bp 0.80260203229152 0.544250837234039 0.044228613 0.019066513 prediction 0.516702390114962 Functional Loss - COMMD10 ENSG00000145781 CDS Human protein_coding chr5:115469811 chr5:115469813 stopgain 0.999 1 23 hm5C_associated_SNPs_62712 0 0 1 0 2 COMMD10 chr5:115469875 5'GT 115469875 Upstream 63bp
chr1 32043028 32043028 1 + C T BLCA 32043026 + 32043006 32043046 41 CTGACTTCTGGGACTTCTGCCTCGGCGTGCCACCCCCTTTT CTGACTTCTGGGACTTCTGCCTTGGCGTGCCACCCCCTTTT < 41bp 0.758346401818722 0.494309097174084 0.2564517 0.098926455 prediction 0.516692803637444 Functional Loss - TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32043026 chr1:32043028 synonymous SNV . 0 23 hm5C_associated_SNPs_62715 0 0 0 0 1 TINAGL1 chr1:32043059 5'GT 32043059 Upstream 32bp
chr19 50881460 50881460 1 + C T SKCM 50881458 + 50881438 50881478 41 AAGCGAAAGAAGGGCCCAGCCCCGAAGATGCTGGGCCACGA AAGCGAAAGAAGGGCCCAGCCCTGAAGATGCTGGGCCACGA < 41bp 0.767574143199235 0.509242002565012 0.42572486 0.40789878 prediction 0.516664281268445 Functional Loss - NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50881458 chr19:50881460 nonsynonymous SNV 0.192 3 23 hm5C_associated_SNPs_62716 0 0 1 0 1 NR1H2 chr19:50881406 3'AG 50881406 Downstream 55bp
chr7 92015842 92015842 1 + G T LUAD 92015840 + 92015820 92015860 41 AAGTGCAAGTATGACTTTTGCTGGATTTGCCTTGAAGAGTG AAGTGCAAGTATGACTTTTGCTTGATTTGCCTTGAAGAGTG < 41bp 0.860663973262895 0.602334750034542 0.38209343 0.07324666 prediction 0.516658446456705 Functional Loss - ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:92015840 chr7:92015842 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_62717 0 0 1 0 1 ANKIB1 chr7:92015823 3'AG 92015823 Downstream 20bp
chr16 67943583 67943583 1 + A C LUAD 67943582 + 67943562 67943602 41 CGGCTGTACCGGCAGATCCTCAGGGGCAAGTACAGTTACTC CGGCTGTACCGGCAGATCCTCCGGGGCAAGTACAGTTACTC < 41bp 0.771570975467745 0.513242228248495 0.9368812 0.91467154 prediction 0.516657494438499 Functional Loss - PSKH1 ENSG00000159792 CDS Human protein_coding chr16:67943582 chr16:67943583 synonymous SNV . 0 22 hm5C_associated_SNPs_62718 0 0 0 0 1 PSKH1 chr16:67943609 5'GT 67943609 Upstream 27bp
chr2 239234519 239234519 1 + C T LUAD 239234517 + 239234497 239234537 41 TGTAATGGTGTCGGGAGAGCCACTGTTGGCCAAACCAGCCC TGTAATGGTGTCGGGAGAGCCATTGTTGGCCAAACCAGCCC < 41bp 0.758322897277658 0.49038994244385 0.51256996 0.53981394 prediction 0.516645794555316 Functional Loss - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239234517 chr2:239234519 synonymous SNV . 0 23 hm5C_associated_SNPs_62719 0 0 1 0 2 TRAF3IP1 chr2:239234450 3'AG 239234450 Downstream 70bp
chr2 239234519 239234519 1 + C T LUAD 239234517 + 239234497 239234537 41 TGTAATGGTGTCGGGAGAGCCACTGTTGGCCAAACCAGCCC TGTAATGGTGTCGGGAGAGCCATTGTTGGCCAAACCAGCCC < 41bp 0.758322897277658 0.49038994244385 0.51256996 0.53981394 prediction 0.516645794555316 Functional Loss - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239234517 chr2:239234519 synonymous SNV . 0 23 hm5C_associated_SNPs_62719 0 0 1 0 2 TRAF3IP1 chr2:239234611 5'GT 239234611 Upstream 93bp
chr6 17292073 17292073 1 + C T SKCM 17292071 + 17292051 17292091 41 CAGCCGACAGCAGCTGCCGCCTCCACCACCCCTTACATTGA CAGCCGACAGCAGCTGCCGCCTTCACCACCCCTTACATTGA < 41bp 0.758322057066514 0.477787285090366 0.9282235 0.015811116 prediction 0.516644114133027 Functional Loss - RBM24 ENSG00000112183 CDS Human protein_coding chr6:17292071 chr6:17292073 nonsynonymous SNV 0.988 1 23 hm5C_associated_SNPs_62720 0 0 0 0 1 RBM24 chr6:17291987 3'AG 17291987 Downstream 87bp
chr17 79671373 79671373 1 + G T LUSC 79671370 + 79671350 79671390 41 GCACCCCTGGATAACGCCCCCAAGGAGTACCCCCCCAAGAT GCACCCCTGGATAACGCCCCCAATGAGTACCCCCCCAAGAT < 41bp 0.75831943791682 0.351632933611394 0.4865538 0.056225628 prediction 0.51663887583364 Functional Loss - MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79671370 chr17:79671373 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_62722 0 0 1 0 2 MRPL12 chr17:79671274 3'AG 79671274 Downstream 100bp
chr17 79671373 79671373 1 + G T LUSC 79671370 + 79671350 79671390 41 GCACCCCTGGATAACGCCCCCAAGGAGTACCCCCCCAAGAT GCACCCCTGGATAACGCCCCCAATGAGTACCCCCCCAAGAT < 41bp 0.75831943791682 0.351632933611394 0.4865538 0.056225628 prediction 0.51663887583364 Functional Loss - MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79671370 chr17:79671373 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_62722 0 0 1 0 2 MRPL12 chr17:79671460 5'GT 79671460 Upstream 88bp
chr19 49513277 49513277 1 + G C SARC 49513273 + 49513253 49513293 41 CGACGGGCAAGATCTCCAAGCTGGGCCGCTCCTTCACACGC CGACGGGCAAGATCTCCAAGCTGGCCCGCTCCTTCACACGC < 41bp 0.823594337227665 0.565298783912653 0.28870112 0.09379223 prediction 0.516591106630024 Functional Loss - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49513273 chr19:49513277 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_62726 0 0 1 0 2 RUVBL2 chr19:49513230 3'AG 49513230 Downstream 48bp
chr19 49513277 49513277 1 + G C SARC 49513273 + 49513253 49513293 41 CGACGGGCAAGATCTCCAAGCTGGGCCGCTCCTTCACACGC CGACGGGCAAGATCTCCAAGCTGGCCCGCTCCTTCACACGC < 41bp 0.823594337227665 0.565298783912653 0.28870112 0.09379223 prediction 0.516591106630024 Functional Loss - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49513273 chr19:49513277 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_62726 0 0 1 0 2 RUVBL2 chr19:49513323 5'GT 49513323 Upstream 47bp
chr20 43043184 43043184 1 + G C BLCA 43043183 + 43043163 43043203 41 CCGGGATCAACGGCGACATTCGGGCGAAGAAGATTGCCAGC CCGGGATCAACGGCGACATTCCGGCGAAGAAGATTGCCAGC < 41bp 0.7582803775756 0.433846469709904 0.9489695 0.9200377 prediction 0.516560755151199 Functional Loss - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43043183 chr20:43043184 nonsynonymous SNV 0.911 2 22 hm5C_associated_SNPs_62728 0 0 1 0 1 HNF4A chr20:43043147 3'AG 43043147 Downstream 38bp
chr1 171761218 171761218 1 + C T rs2232823 171761216 + 171761196 171761236 41 GCAGCCTCCCCCTCTTTGTCCACGATCATTTTCCAAAGTCC GCAGCCTCCCCCTCTTTGTCCATGATCATTTTCCAAAGTCC < 41bp 0.798640113506852 0.540364533280953 0.25250477 0.27062106 prediction 0.516551160451797 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171761216 chr1:171761218 synonymous SNV . 0 23 hm5C_associated_SNPs_62729 0 0 1 0 1 METTL13 chr1:171761157 3'AG 171761157 Downstream 62bp
chr6 52319006 52319006 1 + C T UVM 52319004 + 52318984 52319024 41 CGGTGGAAATTCGAGAGGTCCACGAACGGAATGATGGGAGA CGGTGGAAATTCGAGAGGTCCATGAACGGAATGATGGGAGA < 41bp 0.758271284306093 0.467819798244612 0.14425275 0.19103298 prediction 0.516542568612186 Functional Loss - EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52319004 chr6:52319006 synonymous SNV . 0 23 hm5C_associated_SNPs_62731 0 0 0 0 1 EFHC1 chr6:52319085 5'GT 52319085 Upstream 80bp
chr17 6930392 6930392 1 + G C HNSC 6930388 + 6930368 6930408 41 AGCCACGTTCGCATCCACACCGGAGAGAAGCCTTACCACGT AGCCACGTTCGCATCCACACCGGACAGAAGCCTTACCACGT < 41bp 0.758267710142937 0.471740465220416 0.3942922 0.11210817 prediction 0.516535420285874 Functional Loss - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6930388 chr17:6930392 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_62732 0 0 0 0 1 BCL6B chr17:6930406 5'GT 6930406 Upstream 15bp
chr3 169706098 169706098 1 + C T BLCA 169706096 + 169706076 169706116 41 TGAGAGTAGGTGTTTATTACCTCAGTGTGGGTGCAGGCTGT TGAGAGTAGGTGTTTATTACCTTAGTGTGGGTGCAGGCTGT < 41bp 0.797618779895614 0.539352486570258 0.25794464 0.18818685 prediction 0.516532586650711 Functional Loss - SEC62 ENSG00000008952 CDS Human protein_coding chr3:169706096 chr3:169706098 synonymous SNV . 0 23 hm5C_associated_SNPs_62733 0 0 1 0 2 SEC62 chr3:169706028 3'AG 169706028 Downstream 71bp
chr3 169706098 169706098 1 + C T BLCA 169706096 + 169706076 169706116 41 TGAGAGTAGGTGTTTATTACCTCAGTGTGGGTGCAGGCTGT TGAGAGTAGGTGTTTATTACCTTAGTGTGGGTGCAGGCTGT < 41bp 0.797618779895614 0.539352486570258 0.25794464 0.18818685 prediction 0.516532586650711 Functional Loss - SEC62 ENSG00000008952 CDS Human protein_coding chr3:169706096 chr3:169706098 synonymous SNV . 0 23 hm5C_associated_SNPs_62733 0 0 1 0 2 SEC62 chr3:169706147 5'GT 169706147 Upstream 50bp
chr10 86014126 86014126 1 + C T STAD 86014124 + 86014104 86014144 41 ACCATGTCCTTCTTCAACTTCGCCATGCCCCTCTTCATCAC ACCATGTCCTTCTTCAACTTCGTCATGCCCCTCTTCATCAC < 41bp 0.82685946326385 0.568594103647912 0.016827792 0.0055841208 prediction 0.516530719231876 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86014124 chr10:86014126 nonsynonymous SNV 0.049 0 23 hm5C_associated_SNPs_62734 0 0 0 0 2 RGR chr10:86014082 3'AG 86014082 Downstream 45bp
chr10 86014126 86014126 1 + C T STAD 86014124 + 86014104 86014144 41 ACCATGTCCTTCTTCAACTTCGCCATGCCCCTCTTCATCAC ACCATGTCCTTCTTCAACTTCGTCATGCCCCTCTTCATCAC < 41bp 0.82685946326385 0.568594103647912 0.016827792 0.0055841208 prediction 0.516530719231876 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86014124 chr10:86014126 nonsynonymous SNV 0.049 0 23 hm5C_associated_SNPs_62734 0 0 0 0 2 RGR chr10:86014199 5'GT 86014199 Upstream 74bp
chr14 104493112 104493112 1 + C T rs150591179 104493110 + 104493090 104493130 41 GGCCAGCCAGTGGTTCGCCTCTCTGGTGAGCGGCTGCACCC GGCCAGCCAGTGGTTCGCCTCTTTGGTGAGCGGCTGCACCC < 41bp 0.758258833011446 0.486799310365037 0.5554628 0.17329952 prediction 0.516517666022892 Functional Loss - TDRD9 ENSG00000156414 CDS Human protein_coding chr14:104493110 chr14:104493112 synonymous SNV . 0 23 hm5C_associated_SNPs_62735 0 0 0 0 1 TDRD9 chr14:104493016 3'AG 104493016 Downstream 97bp
chr16 27325264 27325264 1 + G C rs35583025 27325263 + 27325243 27325283 41 CAGGAAAGCCCCGCGCGGCGCGGGCCAGGGAAGGGCCACCC CAGGAAAGCCCCGCGCGGCGCCGGCCAGGGAAGGGCCACCC < 41bp 0.82629024266324 0.568037037822506 0.647768 0.46800718 prediction 0.516506409681469 Functional Loss - IL4R ENSG00000077238 UTR5 Human protein_coding chr16:27325263 chr16:27325264 . . 0 22 hm5C_associated_SNPs_62737 0 0 1 0 1 IL4R chr16:27325341 5'GT 27325341 Upstream 78bp
chr2 99976953 99976953 1 + G T UCEC 99976950 + 99976930 99976970 41 AAGATGATATCCTGAAAGAACTGGAAGAATTGTCTTTGGAA AAGATGATATCCTGAAAGAACTGTAAGAATTGTCTTTGGAA < 41bp 0.758247993949727 0.398440401383323 0.13377324 0.07310417 prediction 0.516495987899454 Functional Loss - EIF5B ENSG00000158417 CDS Human protein_coding chr2:99976950 chr2:99976953 stopgain 1.000 0 24 hm5C_associated_SNPs_62740 0 0 1 0 2 EIF5B chr2:99976928 3'AG 99976928 Downstream 26bp
chr2 99976953 99976953 1 + G T UCEC 99976950 + 99976930 99976970 41 AAGATGATATCCTGAAAGAACTGGAAGAATTGTCTTTGGAA AAGATGATATCCTGAAAGAACTGTAAGAATTGTCTTTGGAA < 41bp 0.758247993949727 0.398440401383323 0.13377324 0.07310417 prediction 0.516495987899454 Functional Loss - EIF5B ENSG00000158417 CDS Human protein_coding chr2:99976950 chr2:99976953 stopgain 1.000 0 24 hm5C_associated_SNPs_62740 0 0 1 0 2 EIF5B chr2:99977012 5'GT 99977012 Upstream 60bp
chr17 47004417 47004417 1 + A T SKCM 47004413 + 47004393 47004433 41 GTCAGAAAGTGCTGGAGAGGCTCCATAATGAGAATGCAGAA GTCAGAAAGTGCTGGAGAGGCTCCTTAATGAGAATGCAGAA < 41bp 0.86992140040447 0.61168401488498 0.90330446 0.059365213 prediction 0.51647477103898 Functional Loss - UBE2Z ENSG00000159202 CDS Human protein_coding chr17:47004413 chr17:47004417 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_62742 0 0 1 0 1 UBE2Z chr17:47004326 3'AG 47004326 Downstream 92bp
chr10 103292777 103292777 1 + C T SKCM 103292775 + 103292755 103292795 41 ATACAGGTTCAGTCCTCTGTCTCCAGTATGATGAGAGAGTG ATACAGGTTCAGTCCTCTGTCTTCAGTATGATGAGAGAGTG < 41bp 0.842265548922759 0.584039583113939 0.9194063 0.20079601 prediction 0.516451931617638 Functional Loss - BTRC ENSG00000166167 CDS Human protein_coding chr10:103292775 chr10:103292777 synonymous SNV . 0 23 hm5C_associated_SNPs_62743 0 0 1 0 2 BTRC chr10:103292709 3'AG 103292709 Downstream 69bp
chr10 103292777 103292777 1 + C T SKCM 103292775 + 103292755 103292795 41 ATACAGGTTCAGTCCTCTGTCTCCAGTATGATGAGAGAGTG ATACAGGTTCAGTCCTCTGTCTTCAGTATGATGAGAGAGTG < 41bp 0.842265548922759 0.584039583113939 0.9194063 0.20079601 prediction 0.516451931617638 Functional Loss - BTRC ENSG00000166167 CDS Human protein_coding chr10:103292775 chr10:103292777 synonymous SNV . 0 23 hm5C_associated_SNPs_62743 0 0 1 0 2 BTRC chr10:103292827 5'GT 103292827 Upstream 51bp
chr16 31497523 31497523 1 + G T UCEC 31497521 + 31497501 31497541 41 TCTCCGGAGCTGTATTCATCCAGCAGGCTCTGGGCTGGAAC TCTCCGGAGCTGTATTCATCCATCAGGCTCTGGGCTGGAAC < 41bp 0.880949405272482 0.622727300721099 0.40575832 0.15151295 prediction 0.516444209102767 Functional Loss - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31497521 chr16:31497523 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_62744 0 0 0 1 2 SLC5A2 chr16:31497491 3'AG 31497491 Downstream 33bp
chr16 31497523 31497523 1 + G T UCEC 31497521 + 31497501 31497541 41 TCTCCGGAGCTGTATTCATCCAGCAGGCTCTGGGCTGGAAC TCTCCGGAGCTGTATTCATCCATCAGGCTCTGGGCTGGAAC < 41bp 0.880949405272482 0.622727300721099 0.40575832 0.15151295 prediction 0.516444209102767 Functional Loss - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31497521 chr16:31497523 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_62744 0 0 0 1 2 SLC5A2 chr16:31497596 5'GT 31497596 Upstream 74bp
chr19 30312702 30312702 1 + C T SKCM 30312700 + 30312680 30312720 41 TGTTCAGGAGATGAAATTCTCACCATGGAATTAATGATTAT TGTTCAGGAGATGAAATTCTCATCATGGAATTAATGATTAT < 41bp 0.789151186935648 0.530946309587065 0.18018216 0.10511434 prediction 0.516409754697167 Functional Loss - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30312700 chr19:30312702 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_62745 0 0 1 0 2 CCNE1 chr19:30312629 3'AG 30312629 Downstream 74bp
chr19 30312702 30312702 1 + C T SKCM 30312700 + 30312680 30312720 41 TGTTCAGGAGATGAAATTCTCACCATGGAATTAATGATTAT TGTTCAGGAGATGAAATTCTCATCATGGAATTAATGATTAT < 41bp 0.789151186935648 0.530946309587065 0.18018216 0.10511434 prediction 0.516409754697167 Functional Loss - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30312700 chr19:30312702 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_62745 0 0 1 0 2 CCNE1 chr19:30312724 5'GT 30312724 Upstream 23bp
chr19 10132290 10132290 1 + C T rs747574 10132288 + 10132268 10132308 41 GCTACTCGCCGCTGACCACGCTCAAAACCGTGGATTCCTCT GCTACTCGCCGCTGACCACGCTTAAAACCGTGGATTCCTCT < 41bp 0.781754744843846 0.523555442559077 0.18064901 0.10739979 prediction 0.516398604569537 Functional Loss - RDH8 ENSG00000080511 CDS Human protein_coding chr19:10132288 chr19:10132290 synonymous SNV . 0 23 hm5C_associated_SNPs_62746 0 0 0 0 1 RDH8 chr19:10132210 3'AG 10132210 Downstream 81bp
chr22 49042485 49042485 1 + G T LUAD 49042483 + 49042463 49042503 41 AGCCTCGGAGGACGATCGCCCGGCAGACCGCCCGCTGTGCG AGCCTCGGAGGACGATCGCCCGTCAGACCGCCCGCTGTGCG < 41bp 0.880451384970345 0.622254101609832 0.3225991 0.06539291 prediction 0.516394566721025 Functional Loss - FAM19A5 ENSG00000219438 CDS Human protein_coding chr22:49042483 chr22:49042485 synonymous SNV . 0 23 hm5C_associated_SNPs_62747 0 0 0 0 2 FAM19A5 chr22:49042409 3'AG 49042409 Downstream 77bp
chr22 49042485 49042485 1 + G T LUAD 49042483 + 49042463 49042503 41 AGCCTCGGAGGACGATCGCCCGGCAGACCGCCCGCTGTGCG AGCCTCGGAGGACGATCGCCCGTCAGACCGCCCGCTGTGCG < 41bp 0.880451384970345 0.622254101609832 0.3225991 0.06539291 prediction 0.516394566721025 Functional Loss - FAM19A5 ENSG00000219438 CDS Human protein_coding chr22:49042483 chr22:49042485 synonymous SNV . 0 23 hm5C_associated_SNPs_62747 0 0 0 0 2 FAM19A5 chr22:49042558 5'GT 49042558 Upstream 74bp
chr7 127230153 127230153 1 + G T OV 127230150 + 127230130 127230170 41 TTGTGGTGGACAGTAATGACCGGGAGCGGGTCCAAGAATCT TTGTGGTGGACAGTAATGACCGGTAGCGGGTCCAAGAATCT < 41bp 0.91496859476167 0.656792979672788 0.40655392 0.062831044 prediction 0.516351230177764 Functional Loss - ARF5 ENSG00000004059 CDS Human protein_coding chr7:127230150 chr7:127230153 stopgain 1.000 1 24 hm5C_associated_SNPs_62751 0 0 1 1 1 ARF5 chr7:127230120 3'AG 127230120 Downstream 34bp
chr21 34923567 34923567 1 + C T LGG 34923565 + 34923545 34923585 41 TCGCAGTCCCTGGAGGTGCCCTCGACGACAGCGCTGGAATC TCGCAGTCCCTGGAGGTGCCCTTGACGACAGCGCTGGAATC < 41bp 0.758172229436171 0.487013430269091 0.47328877 0.21814156 prediction 0.516344458872342 Functional Loss - SON ENSG00000159140 CDS Human protein_coding chr21:34923565 chr21:34923567 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_62753 0 0 1 0 1 SON chr21:34923595 5'GT 34923595 Upstream 29bp
chr20 42680009 42680009 1 + G T LUAD 42680006 + 42679986 42680026 41 CGGGCCGGCCCGGGCCCCTGCTGGGTCGCCCGGCAATGCTG CGGGCCGGCCCGGGCCCCTGCTGTGTCGCCCGGCAATGCTG < 41bp 0.918321472879241 0.6601495858142 0.59813863 0.14856902 prediction 0.516343774130083 Functional Loss - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42680006 chr20:42680009 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_62754 0 0 0 0 1 TOX2 chr20:42679946 3'AG 42679946 Downstream 64bp
chr1 57378102 57378102 1 + G T LUAD 57378100 + 57378080 57378120 41 AGCCTATCCACGAGGTGCTGCGGCACACAAGCCTGGGGCCT AGCCTATCCACGAGGTGCTGCGTCACACAAGCCTGGGGCCT < 41bp 0.75817177871085 0.40775479405483 0.9091991 0.54580003 prediction 0.516343557421701 Functional Loss - C8A ENSG00000157131 CDS Human protein_coding chr1:57378100 chr1:57378102 synonymous SNV . 0 23 hm5C_associated_SNPs_62755 0 0 1 0 1 C8A chr1:57378076 3'AG 57378076 Downstream 27bp
chrX 17047709 17047709 1 + G T STAD 17047706 + 17047686 17047726 41 GGGATCCTCATCAGGGGGCCCAGGAACCAAGCCCCTTCGGC GGGATCCTCATCAGGGGGCCCAGTAACCAAGCCCCTTCGGC < 41bp 0.758169546924179 0.359671643709579 0.91941214 0.7493543 prediction 0.516339093848359 Functional Loss - REPS2 ENSG00000169891 CDS Human protein_coding chrX:17047706 chrX:17047709 nonsynonymous SNV 0.890 3 24 hm5C_associated_SNPs_62757 0 0 0 0 2 REPS2 chrX:17047649 3'AG 17047649 Downstream 61bp
chrX 17047709 17047709 1 + G T STAD 17047706 + 17047686 17047726 41 GGGATCCTCATCAGGGGGCCCAGGAACCAAGCCCCTTCGGC GGGATCCTCATCAGGGGGCCCAGTAACCAAGCCCCTTCGGC < 41bp 0.758169546924179 0.359671643709579 0.91941214 0.7493543 prediction 0.516339093848359 Functional Loss - REPS2 ENSG00000169891 CDS Human protein_coding chrX:17047706 chrX:17047709 nonsynonymous SNV 0.890 3 24 hm5C_associated_SNPs_62757 0 0 0 0 2 REPS2 chrX:17047746 5'GT 17047746 Upstream 38bp
chr19 10368928 10368928 1 + C T UCEC 10368926 + 10368906 10368946 41 GCCCATGGCCCCCGGGGCCCCACAAGTTACTACTACATGCT GCCCATGGCCCCCGGGGCCCCATAAGTTACTACTACATGCT < 41bp 0.7854410915901 0.527272410461528 0.5931123 0.24232692 prediction 0.516337362257143 Functional Loss - MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10368926 chr19:10368928 stopgain 0.975 2 23 hm5C_associated_SNPs_62758 0 0 1 0 2 MRPL4 chr19:10368898 3'AG 10368898 Downstream 31bp
chr19 10368928 10368928 1 + C T UCEC 10368926 + 10368906 10368946 41 GCCCATGGCCCCCGGGGCCCCACAAGTTACTACTACATGCT GCCCATGGCCCCCGGGGCCCCATAAGTTACTACTACATGCT < 41bp 0.7854410915901 0.527272410461528 0.5931123 0.24232692 prediction 0.516337362257143 Functional Loss - MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10368926 chr19:10368928 stopgain 0.975 2 23 hm5C_associated_SNPs_62758 0 0 1 0 2 MRPL4 chr19:10369004 5'GT 10369004 Upstream 77bp
chr10 104158521 104158521 1 + G T GBM 104158519 + 104158499 104158539 41 AGGAAGAGGTGCAGCGGAAGCGGAGGAAGGCCTTGCCCACC AGGAAGAGGTGCAGCGGAAGCGTAGGAAGGCCTTGCCCACC < 41bp 0.889803350216688 0.631643059571497 0.91457343 0.8159896 prediction 0.516320581290382 Functional Loss - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104158519 chr10:104158521 synonymous SNV . 0 23 hm5C_associated_SNPs_62760 0 0 1 0 1 NFKB2 chr10:104158496 3'AG 104158496 Downstream 26bp
chr11 76825480 76825480 1 + G T UCEC 76825477 + 76825457 76825497 41 GGCCTCATCAGTGCCTCCATCAAGGTGAGAACACGGCAGTC GGCCTCATCAGTGCCTCCATCAATGTGAGAACACGGCAGTC < 41bp 0.758158905019351 0.36802077215787 0.971595 0.9208703 prediction 0.516317810038701 Functional Loss - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76825477 chr11:76825480 nonsynonymous SNV 0.974 4 24 hm5C_associated_SNPs_62761 0 0 0 0 1 CAPN5 chr11:76825480 5'GT 76825480 Upstream 1bp
chr8 19809333 19809333 1 + G T UCEC 19809330 + 19809310 19809350 41 AAACTTGTGGCCGCCCTGTACAAGAGAGAACCAGACTCCAA AAACTTGTGGCCGCCCTGTACAATAGAGAACCAGACTCCAA < 41bp 0.90378998795698 0.645634942261028 0.21724093 0.08161399 prediction 0.516310091391903 Functional Loss - LPL ENSG00000175445 CDS Human protein_coding chr8:19809330 chr8:19809333 nonsynonymous SNV 0.987 2 24 hm5C_associated_SNPs_62763 0 0 0 0 1 LPL chr8:19809280 3'AG 19809280 Downstream 54bp
chr17 79941448 79941448 1 + C T BLCA 79941446 + 79941426 79941466 41 GCAGGTTTCAGAGGAGCGTGCTCGACCTTTCTCTCCAGTGG GCAGGTTTCAGAGGAGCGTGCTTGACCTTTCTCTCCAGTGG < 41bp 0.765382708212726 0.507232583573507 0.31238133 0.29909885 prediction 0.516300249278439 Functional Loss - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79941446 chr17:79941448 synonymous SNV . 0 23 hm5C_associated_SNPs_62765 0 0 1 0 2 ASPSCR1 chr17:79941430 3'AG 79941430 Downstream 19bp
chr17 79941448 79941448 1 + C T BLCA 79941446 + 79941426 79941466 41 GCAGGTTTCAGAGGAGCGTGCTCGACCTTTCTCTCCAGTGG GCAGGTTTCAGAGGAGCGTGCTTGACCTTTCTCTCCAGTGG < 41bp 0.765382708212726 0.507232583573507 0.31238133 0.29909885 prediction 0.516300249278439 Functional Loss - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79941446 chr17:79941448 synonymous SNV . 0 23 hm5C_associated_SNPs_62765 0 0 1 0 2 ASPSCR1 chr17:79941544 5'GT 79941544 Upstream 97bp
chr6 158074606 158074606 1 + G T LUSC 158074604 + 158074584 158074624 41 GCCCGACACGCCGCAGCCAGCAGCACCCTCCAATGGCATCA GCCCGACACGCCGCAGCCAGCATCACCCTCCAATGGCATCA < 41bp 0.758136931557344 0.404221435110875 0.10989666 0.017487735 prediction 0.516273863114687 Functional Loss - ZDHHC14 ENSG00000175048 CDS Human protein_coding chr6:158074604 chr6:158074606 nonsynonymous SNV 0.321 0 23 hm5C_associated_SNPs_62768 0 0 0 0 2 ZDHHC14 chr6:158074557 3'AG 158074557 Downstream 50bp
chr6 158074606 158074606 1 + G T LUSC 158074604 + 158074584 158074624 41 GCCCGACACGCCGCAGCCAGCAGCACCCTCCAATGGCATCA GCCCGACACGCCGCAGCCAGCATCACCCTCCAATGGCATCA < 41bp 0.758136931557344 0.404221435110875 0.10989666 0.017487735 prediction 0.516273863114687 Functional Loss - ZDHHC14 ENSG00000175048 CDS Human protein_coding chr6:158074604 chr6:158074606 nonsynonymous SNV 0.321 0 23 hm5C_associated_SNPs_62768 0 0 0 0 2 ZDHHC14 chr6:158074659 5'GT 158074659 Upstream 54bp
chr1 171123302 171123302 1 + C T rs115841123 171123300 + 171123280 171123320 41 GACTCATGTACCCTGCCAACCACGAATGAAATGATGGATGA GACTCATGTACCCTGCCAACCATGAATGAAATGATGGATGA < 41bp 0.783925336686473 0.525791115389974 0.17498499 0.25458002 prediction 0.516268442592998 Functional Loss - FMO6P ENSG00000117507 CDS Human transcribed_unitary_pseudogene chr1:171123300 chr1:171123302 nonsynonymous SNV 0.257 0 23 hm5C_associated_SNPs_62769 0 0 0 0 2 FMO6P chr1:171123281 3'AG 171123281 Downstream 22bp
chr1 171123302 171123302 1 + C T rs115841123 171123300 + 171123280 171123320 41 GACTCATGTACCCTGCCAACCACGAATGAAATGATGGATGA GACTCATGTACCCTGCCAACCATGAATGAAATGATGGATGA < 41bp 0.783925336686473 0.525791115389974 0.17498499 0.25458002 prediction 0.516268442592998 Functional Loss - FMO6P ENSG00000117507 CDS Human transcribed_unitary_pseudogene chr1:171123300 chr1:171123302 nonsynonymous SNV 0.257 0 23 hm5C_associated_SNPs_62769 0 0 0 0 2 FMO6P chr1:171123353 5'GT 171123353 Upstream 52bp
chr1 32503572 32503572 1 + C T HNSC 32503570 + 32503550 32503590 41 GGGTGCTCCAGCACCAAGAGCACGGACAGCGGGCATCCAGA GGGTGCTCCAGCACCAAGAGCATGGACAGCGGGCATCCAGA < 41bp 0.758127477530445 0.496148394751162 0.19907165 0.17764372 prediction 0.51625495506089 Functional Loss - KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32503570 chr1:32503572 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_62770 0 0 1 0 1 KHDRBS1 chr1:32503637 5'GT 32503637 Upstream 66bp
chr20 42680100 42680100 1 + G C LUSC 42680096 + 42680076 42680116 41 GCATCCGGAGCAGCATCGCCCACAGCTCCCCATCACCGCCG GCATCCGGAGCAGCATCGCCCACACCTCCCCATCACCGCCG < 41bp 0.758125806660727 0.471233112258786 0.1118066 0.017586768 prediction 0.516251613321454 Functional Loss - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42680096 chr20:42680100 nonsynonymous SNV 0.783 0 25 hm5C_associated_SNPs_62771 0 0 0 0 1 TOX2 chr20:42680185 5'GT 42680185 Upstream 86bp
chr4 187130377 187130377 1 + C T BLCA 187130375 + 187130355 187130395 41 TCCCCGAGAATGCACAAGGGCGCCATCCATATGCCTACGTG TCCCCGAGAATGCACAAGGGCGTCATCCATATGCCTACGTG < 41bp 0.758121444230302 0.476196390253018 0.078385055 0.13146412 prediction 0.516242888460605 Functional Loss - CYP4V2 ENSG00000145476;ENSG00000164344 CDS Human other chr4:187130375 chr4:187130377 synonymous SNV . 0 23 hm5C_associated_SNPs_62772 0 0 1 0 1 CYP4V2 chr4:187130426 5'GT 187130426 Upstream 50bp
chr3 129810156 129810156 1 + G T UCEC 129810153 + 129810133 129810173 41 CTTTCTTTAAAGAGGCACCTCTGGACCTGCAGCACCGGCTC CTTTCTTTAAAGAGGCACCTCTGTACCTGCAGCACCGGCTC < 41bp 0.904657958773667 0.646543749384129 0.83498883 0.40966746 prediction 0.516228418779076 Functional Loss - ALG1L2 ENSG00000251287 ncRNA_exonic Human protein_coding chr3:129810153 chr3:129810156 . 0.086 0 24 hm5C_associated_SNPs_62775 0 0 0 0 3 LINC02014 chr3:129810082 3'AG 129810082 Downstream 75bp
chr3 129810156 129810156 1 + G T UCEC 129810153 + 129810133 129810173 41 CTTTCTTTAAAGAGGCACCTCTGGACCTGCAGCACCGGCTC CTTTCTTTAAAGAGGCACCTCTGTACCTGCAGCACCGGCTC < 41bp 0.904657958773667 0.646543749384129 0.83498883 0.40966746 prediction 0.516228418779076 Functional Loss - ALG1L2 ENSG00000251287 ncRNA_exonic Human protein_coding chr3:129810153 chr3:129810156 . 0.086 0 24 hm5C_associated_SNPs_62775 0 0 0 0 3 ALG1L2 chr3:129810104 3'AG 129810104 Downstream 53bp
chr3 129810156 129810156 1 + G T UCEC 129810153 + 129810133 129810173 41 CTTTCTTTAAAGAGGCACCTCTGGACCTGCAGCACCGGCTC CTTTCTTTAAAGAGGCACCTCTGTACCTGCAGCACCGGCTC < 41bp 0.904657958773667 0.646543749384129 0.83498883 0.40966746 prediction 0.516228418779076 Functional Loss - ALG1L2 ENSG00000251287 ncRNA_exonic Human protein_coding chr3:129810153 chr3:129810156 . 0.086 0 24 hm5C_associated_SNPs_62775 0 0 0 0 3 ALG1L2 chr3:129810214 5'GT 129810214 Upstream 59bp
chr21 45825814 45825814 1 + G T LUAD 45825811 + 45825791 45825831 41 CATCCCGGCGACGCTGTACCCCGGGCGCGTCATCCTCTCTC CATCCCGGCGACGCTGTACCCCGTGCGCGTCATCCTCTCTC < 41bp 0.758107192477786 0.359484592480853 0.8625624 0.10813326 prediction 0.516214384955571 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45825811 chr21:45825814 nonsynonymous SNV 0.773 4 24 hm5C_associated_SNPs_62776 0 0 0 0 1 TRPM2 chr21:45825788 3'AG 45825788 Downstream 27bp
chr21 45825813 45825813 1 + G T LUAD 45825811 + 45825791 45825831 41 CATCCCGGCGACGCTGTACCCCGGGCGCGTCATCCTCTCTC CATCCCGGCGACGCTGTACCCCTGGCGCGTCATCCTCTCTC < 41bp 0.758107192477786 0.398228271471565 0.8625624 0.06444445 prediction 0.516214384955571 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45825811 chr21:45825813 nonsynonymous SNV 0.657 4 23 hm5C_associated_SNPs_62777 0 0 0 0 1 TRPM2 chr21:45825788 3'AG 45825788 Downstream 26bp
chr3 185316310 185316310 1 + C T LUSC 185316308 + 185316288 185316328 41 AACTTCTGCTTGTAATGGAACACGGAATGTGGCCCCTTCAG AACTTCTGCTTGTAATGGAACATGGAATGTGGCCCCTTCAG < 41bp 0.778152541601684 0.520045574998458 0.14189169 0.1541197 prediction 0.516213933206452 Functional Loss - SENP2 ENSG00000163904 CDS Human protein_coding chr3:185316308 chr3:185316310 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_62778 0 0 1 0 1 SENP2 chr3:185316333 5'GT 185316333 Upstream 24bp
chr4 96073882 96073882 1 + G T UCEC 96073879 + 96073859 96073899 41 ATGAGGGAGATTGTGTGCATCAAGAAGTTACGCCCCTCATT ATGAGGGAGATTGTGTGCATCAATAAGTTACGCCCCTCATT < 41bp 0.758105506559811 0.403248565029152 0.19411531 0.02756381 prediction 0.516211013119623 Functional Loss - BMPR1B ENSG00000138696 CDS Human protein_coding chr4:96073879 chr4:96073882 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_62779 0 0 1 0 2 BMPR1B chr4:96073794 3'AG 96073794 Downstream 89bp
chr4 96073882 96073882 1 + G T UCEC 96073879 + 96073859 96073899 41 ATGAGGGAGATTGTGTGCATCAAGAAGTTACGCCCCTCATT ATGAGGGAGATTGTGTGCATCAATAAGTTACGCCCCTCATT < 41bp 0.758105506559811 0.403248565029152 0.19411531 0.02756381 prediction 0.516211013119623 Functional Loss - BMPR1B ENSG00000138696 CDS Human protein_coding chr4:96073879 chr4:96073882 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_62779 0 0 1 0 2 BMPR1B chr4:96073924 5'GT 96073924 Upstream 43bp
chr12 120876032 120876032 1 + G T COAD 120876030 + 120876010 120876050 41 CGCCCATGGCGAAGAGGGCTCAGGTACTGGGGCCGGGGTCG CGCCCATGGCGAAGAGGGCTCATGTACTGGGGCCGGGGTCG < 41bp 0.887854601191971 0.629749903727313 0.41583812 0.24364638 prediction 0.516209394929316 Functional Loss - COX6A1 ENSG00000111775;ENSG00000111780 CDS Human other chr12:120876030 chr12:120876032 nonsynonymous SNV 0.984 1 23 hm5C_associated_SNPs_62780 0 0 1 0 1 COX6A1 chr12:120876032 5'GT 120876032 Upstream 1bp
chrX 19369486 19369486 1 + C T COAD 19369484 + 19369464 19369504 41 GGCTCACGGCTTTACTTTCACCCGGGGCCTTTCCGTCCGAG GGCTCACGGCTTTACTTTCACCTGGGGCCTTTCCGTCCGAG < 41bp 0.766929349699994 0.508825749806515 0.23546809 0.51574844 prediction 0.516207199786958 Functional Loss - PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19369484 chrX:19369486 nonsynonymous SNV 0.972 4 23 hm5C_associated_SNPs_62781 0 0 1 0 2 PDHA1 chrX:19369399 3'AG 19369399 Downstream 88bp
chrX 19369486 19369486 1 + C T COAD 19369484 + 19369464 19369504 41 GGCTCACGGCTTTACTTTCACCCGGGGCCTTTCCGTCCGAG GGCTCACGGCTTTACTTTCACCTGGGGCCTTTCCGTCCGAG < 41bp 0.766929349699994 0.508825749806515 0.23546809 0.51574844 prediction 0.516207199786958 Functional Loss - PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19369484 chrX:19369486 nonsynonymous SNV 0.972 4 23 hm5C_associated_SNPs_62781 0 0 1 0 2 PDHA1 chrX:19369525 5'GT 19369525 Upstream 40bp
chr5 34803869 34803869 1 + G T PAAD 34803866 + 34803846 34803886 41 AACAGCCACCATGAATGCATCAGGAAGCTGCTTCAGGTAAG AACAGCCACCATGAATGCATCAGTAAGCTGCTTCAGGTAAG < 41bp 0.758094660425777 0.377040214888913 0.61708397 0.23191896 prediction 0.516189320851553 Functional Loss - RAI14 ENSG00000039560 CDS Human protein_coding chr5:34803866 chr5:34803869 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_62782 0 0 1 0 2 RAI14 chr5:34803817 3'AG 34803817 Downstream 53bp
chr5 34803869 34803869 1 + G T PAAD 34803866 + 34803846 34803886 41 AACAGCCACCATGAATGCATCAGGAAGCTGCTTCAGGTAAG AACAGCCACCATGAATGCATCAGTAAGCTGCTTCAGGTAAG < 41bp 0.758094660425777 0.377040214888913 0.61708397 0.23191896 prediction 0.516189320851553 Functional Loss - RAI14 ENSG00000039560 CDS Human protein_coding chr5:34803866 chr5:34803869 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_62782 0 0 1 0 2 RAI14 chr5:34803881 5'GT 34803881 Upstream 13bp
chr1 6637120 6637120 1 + C T CESC 6637118 + 6637098 6637138 41 CCTGTGGGGCTGGGACCTTCCTCAACAAGAGTGGTGAGTGG CCTGTGGGGCTGGGACCTTCCTTAACAAGAGTGGTGAGTGG < 41bp 0.789473140694149 0.531386005030922 0.13570288 0.10087398 prediction 0.516174271326454 Functional Loss - TAS1R1 ENSG00000173662 CDS Human protein_coding chr1:6637118 chr1:6637120 synonymous SNV . 0 23 hm5C_associated_SNPs_62785 0 0 0 0 1 TAS1R1 chr1:6637130 5'GT 6637130 Upstream 11bp
chr9 35675784 35675784 1 + C T UCEC 35675782 + 35675762 35675802 41 CCCGCCCTGGCCCCGGGTGTCCCCAGCCTGCGCGGGCCGCT CCCGCCCTGGCCCCGGGTGTCCTCAGCCTGCGCGGGCCGCT < 41bp 0.788774189029488 0.530688833405094 0.31130573 0.21543571 prediction 0.516170711248788 Functional Loss - CA9 ENSG00000107159 CDS Human protein_coding chr9:35675782 chr9:35675784 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_62786 0 0 1 0 1 CA9 chr9:35675758 3'AG 35675758 Downstream 27bp
chr19 33651378 33651378 1 + A C COAD 33651374 + 33651354 33651394 41 TGTGGCTATTTGGGATGTAGCAGAAGGCTACCGGAAGCTCT TGTGGCTATTTGGGATGTAGCAGACGGCTACCGGAAGCTCT < 41bp 0.758084312104545 0.355300307688049 0.88511664 0.8829596 prediction 0.51616862420909 Functional Loss - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33651374 chr19:33651378 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_62787 0 0 0 0 2 WDR88 chr19:33651320 3'AG 33651320 Downstream 59bp
chr19 33651378 33651378 1 + A C COAD 33651374 + 33651354 33651394 41 TGTGGCTATTTGGGATGTAGCAGAAGGCTACCGGAAGCTCT TGTGGCTATTTGGGATGTAGCAGACGGCTACCGGAAGCTCT < 41bp 0.758084312104545 0.355300307688049 0.88511664 0.8829596 prediction 0.51616862420909 Functional Loss - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33651374 chr19:33651378 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_62787 0 0 0 0 2 WDR88 chr19:33651402 5'GT 33651402 Upstream 25bp
chr6 16142016 16142016 1 + G C UCEC 16142012 + 16141992 16142032 41 AACTATGAGGAGCTCTGTGCCAAGGAGCTCTCCTCTGCCAC AACTATGAGGAGCTCTGTGCCAAGCAGCTCTCCTCTGCCAC < 41bp 0.808416302638359 0.550335340504586 0.84335065 0.38448086 prediction 0.516161924267546 Functional Loss - MYLIP ENSG00000007944 CDS Human protein_coding chr6:16142012 chr6:16142016 nonsynonymous SNV 0.982 1 25 hm5C_associated_SNPs_62788 0 0 0 0 1 MYLIP chr6:16142041 5'GT 16142041 Upstream 26bp
chr21 47918594 47918594 1 + A T STAD 47918590 + 47918570 47918610 41 ATTCCAGCGTCGAGCCCTGGCTCGACCGGGTCATTCAGGGC ATTCCAGCGTCGAGCCCTGGCTCGTCCGGGTCATTCAGGGC < 41bp 0.758075326758743 0.432255763503315 0.029890597 0.06505531 prediction 0.516150653517486 Functional Loss - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47918590 chr21:47918594 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_62790 0 0 1 0 1 DIP2A chr21:47918495 3'AG 47918495 Downstream 100bp
chr11 59857292 59857292 1 + G T rs371960706 59857289 + 59857269 59857309 41 TGAAAAAAGAGCAGGAGTTCCTGGGGGTGAGTGAGCCTCCT TGAAAAAAGAGCAGGAGTTCCTGTGGGTGAGTGAGCCTCCT < 41bp 0.905173949447189 0.647120307130806 0.9288944 0.7220684 prediction 0.516107284632767 Functional Loss - MS4A2 ENSG00000149534 CDS Human protein_coding chr11:59857289 chr11:59857292 nonsynonymous SNV 0.602 4 24 hm5C_associated_SNPs_62793 0 0 0 0 1 MS4A2 chr11:59857294 5'GT 59857294 Upstream 3bp
chr19 41707230 41707230 1 + C T UCEC 41707228 + 41707208 41707248 41 GGGACGATGACGGTCAGCACCACGGTCGGCTATACCCTCCT GGGACGATGACGGTCAGCACCATGGTCGGCTATACCCTCCT < 41bp 0.783849348082143 0.525800506243464 0.38460463 0.27164957 prediction 0.516097683677357 Functional Loss - CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41707228 chr19:41707230 nonsynonymous SNV 0.092 3 23 hm5C_associated_SNPs_62795 0 0 0 0 2 CYP2S1 chr19:41707136 3'AG 41707136 Downstream 95bp
chr19 41707230 41707230 1 + C T UCEC 41707228 + 41707208 41707248 41 GGGACGATGACGGTCAGCACCACGGTCGGCTATACCCTCCT GGGACGATGACGGTCAGCACCATGGTCGGCTATACCCTCCT < 41bp 0.783849348082143 0.525800506243464 0.38460463 0.27164957 prediction 0.516097683677357 Functional Loss - CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41707228 chr19:41707230 nonsynonymous SNV 0.092 3 23 hm5C_associated_SNPs_62795 0 0 0 0 2 CYP2S1 chr19:41707277 5'GT 41707277 Upstream 48bp
chr1 46083226 46083226 1 + C T rs72883665 46083224 + 46083204 46083244 41 GGAGGCAGTGGGGATGCTGTCCCCAGTGGAAATGAAGTTTC GGAGGCAGTGGGGATGCTGTCCTCAGTGGAAATGAAGTTTC < 41bp 0.758042821947627 0.493644507479368 0.11713293 0.059145957 prediction 0.516085643895254 Functional Loss - NASP ENSG00000132780 CDS Human protein_coding chr1:46083224 chr1:46083226 nonsynonymous SNV 0.976 0 23 hm5C_associated_SNPs_62797 0 0 1 0 2 NASP chr1:46083135 3'AG 46083135 Downstream 92bp
chr1 46083226 46083226 1 + C T rs72883665 46083224 + 46083204 46083244 41 GGAGGCAGTGGGGATGCTGTCCCCAGTGGAAATGAAGTTTC GGAGGCAGTGGGGATGCTGTCCTCAGTGGAAATGAAGTTTC < 41bp 0.758042821947627 0.493644507479368 0.11713293 0.059145957 prediction 0.516085643895254 Functional Loss - NASP ENSG00000132780 CDS Human protein_coding chr1:46083224 chr1:46083226 nonsynonymous SNV 0.976 0 23 hm5C_associated_SNPs_62797 0 0 1 0 2 NASP chr1:46083263 5'GT 46083263 Upstream 38bp
chr17 4685856 4685856 1 + C T CESC 4685854 + 4685834 4685874 41 CTTGGTGCCATCTACTGCCTCTCGGTGTCTGGAGCTGGGCT CTTGGTGCCATCTACTGCCTCTTGGTGTCTGGAGCTGGGCT < 41bp 0.758042590999846 0.496865364489188 0.20512891 0.37330467 prediction 0.516085181999693 Functional Loss - TM4SF5 ENSG00000142484 CDS Human protein_coding chr17:4685854 chr17:4685856 nonsynonymous SNV 0.956 0 23 hm5C_associated_SNPs_62798 0 0 1 0 2 TM4SF5 chr17:4685798 3'AG 4685798 Downstream 59bp
chr17 4685856 4685856 1 + C T CESC 4685854 + 4685834 4685874 41 CTTGGTGCCATCTACTGCCTCTCGGTGTCTGGAGCTGGGCT CTTGGTGCCATCTACTGCCTCTTGGTGTCTGGAGCTGGGCT < 41bp 0.758042590999846 0.496865364489188 0.20512891 0.37330467 prediction 0.516085181999693 Functional Loss - TM4SF5 ENSG00000142484 CDS Human protein_coding chr17:4685854 chr17:4685856 nonsynonymous SNV 0.956 0 23 hm5C_associated_SNPs_62798 0 0 1 0 2 TM4SF5 chr17:4685934 5'GT 4685934 Upstream 79bp
chr19 16980287 16980287 1 + C T CESC 16980285 + 16980265 16980305 41 CCACAGCACCAGGAGCAGCACTCGGAGGGCCGCAGTGCCCC CCACAGCACCAGGAGCAGCACTTGGAGGGCCGCAGTGCCCC < 41bp 0.758036290463837 0.490363912290162 0.22673175 0.29097158 prediction 0.516072580927673 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16980285 chr19:16980287 nonsynonymous SNV 0.987 2 23 hm5C_associated_SNPs_62799 0 0 1 0 1 SIN3B chr19:16980271 3'AG 16980271 Downstream 17bp
chr15 91493753 91493753 1 + C T SKCM 91493751 + 91493731 91493771 41 TCTATGAGGTGGTCCGGCCCCTCGTCTCCCTGTTGCACCTC TCTATGAGGTGGTCCGGCCCCTTGTCTCCCTGTTGCACCTC < 41bp 0.758033849670115 0.477512949278182 0.01042971 0.007415116 prediction 0.516067699340229 Functional Loss - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91493751 chr15:91493753 synonymous SNV . 0 23 hm5C_associated_SNPs_62800 0 0 1 0 2 UNC45A chr15:91493730 3'AG 91493730 Downstream 24bp
chr15 91493753 91493753 1 + C T SKCM 91493751 + 91493731 91493771 41 TCTATGAGGTGGTCCGGCCCCTCGTCTCCCTGTTGCACCTC TCTATGAGGTGGTCCGGCCCCTTGTCTCCCTGTTGCACCTC < 41bp 0.758033849670115 0.477512949278182 0.01042971 0.007415116 prediction 0.516067699340229 Functional Loss - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91493751 chr15:91493753 synonymous SNV . 0 23 hm5C_associated_SNPs_62800 0 0 1 0 2 UNC45A chr15:91493845 5'GT 91493845 Upstream 93bp
chr7 117171039 117171039 1 + G T LUSC 117171036 + 117171016 117171056 41 AACAAGGAGGAACGCTCTATCGCGATTTATCTAGGCATAGG AACAAGGAGGAACGCTCTATCGCTATTTATCTAGGCATAGG < 41bp 0.902654554404406 0.644629008561491 0.7854738 0.013522714 prediction 0.516051091685832 Functional Loss - CFTR ENSG00000001626 CDS Human protein_coding chr7:117171036 chr7:117171039 synonymous SNV . 0 24 hm5C_associated_SNPs_62802 0 0 0 0 1 CFTR chr7:117170953 3'AG 117170953 Downstream 87bp
chr14 96157137 96157137 1 + C T LUSC 96157135 + 96157115 96157155 41 CATACCCGGGAGCTACTCTCCTCCGGCCAGATGCCCTTCTC CATACCCGGGAGCTACTCTCCTTCGGCCAGATGCCCTTCTC < 41bp 0.760091084513839 0.502077040478606 0.2934149 0.10239419 prediction 0.516028088070467 Functional Loss - TCL1B ENSG00000213231 CDS Human protein_coding chr14:96157135 chr14:96157137 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_62804 0 0 0 0 1 TCL1B chr14:96157073 3'AG 96157073 Downstream 65bp
chr1 161127458 161127458 1 + G T LUAD 161127455 + 161127435 161127475 41 CAGAAATTGCAGTTCCTGAGCTGGATGGAAAGACAGCAAAG CAGAAATTGCAGTTCCTGAGCTGTATGGAAAGACAGCAAAG < 41bp 0.908694773267918 0.650685223638784 0.17869282 0.08095303 prediction 0.516019099258269 Functional Loss - UFC1 ENSG00000143222 CDS Human protein_coding chr1:161127455 chr1:161127458 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_62808 0 0 1 0 2 UFC1 chr1:161127407 3'AG 161127407 Downstream 52bp
chr1 161127458 161127458 1 + G T LUAD 161127455 + 161127435 161127475 41 CAGAAATTGCAGTTCCTGAGCTGGATGGAAAGACAGCAAAG CAGAAATTGCAGTTCCTGAGCTGTATGGAAAGACAGCAAAG < 41bp 0.908694773267918 0.650685223638784 0.17869282 0.08095303 prediction 0.516019099258269 Functional Loss - UFC1 ENSG00000143222 CDS Human protein_coding chr1:161127455 chr1:161127458 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_62808 0 0 1 0 2 UFC1 chr1:161127483 5'GT 161127483 Upstream 26bp
chr11 65617942 65617942 1 + G T COAD 65617939 + 65617919 65617959 41 TTAAGAAGACAGTTGCGATGCACGAAGTCTTTCTGCAGCGC TTAAGAAGACAGTTGCGATGCACTAAGTCTTTCTGCAGCGC < 41bp 0.913073439987427 0.655066578147508 0.06065771 0.04852307 prediction 0.516013723679839 Functional Loss - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65617939 chr11:65617942 stopgain 0.984 1 24 hm5C_associated_SNPs_62809 0 0 0 0 1 SNX32 chr11:65617902 3'AG 65617902 Downstream 41bp
chr22 31661949 31661949 1 + C T SKCM 31661947 + 31661927 31661967 41 TTCAGGCGCAGTAACAGTATCTCCAAGTCCCCTGGCCCCAG TTCAGGCGCAGTAACAGTATCTTCAAGTCCCCTGGCCCCAG < 41bp 0.833813700081432 0.575820136638322 0.9700103 0.39459592 prediction 0.51598712688622 Functional Loss - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31661947 chr22:31661949 nonsynonymous SNV 0.993 1 23 hm5C_associated_SNPs_62812 0 0 1 0 1 LIMK2 chr22:31661932 3'AG 31661932 Downstream 18bp
chr3 62317051 62317051 1 + C T LGG 62317049 + 62317029 62317069 41 GACCAGGATTCACCCACTTCCACGGCCTGAGGTGGTTTCTC GACCAGGATTCACCCACTTCCATGGCCTGAGGTGGTTTCTC < 41bp 0.776956782367846 0.518964393950481 0.71712005 0.87414366 prediction 0.515984776834731 Functional Loss - C3orf14 ENSG00000114405 CDS Human protein_coding chr3:62317049 chr3:62317051 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_62813 0 0 0 0 2 C3orf14 chr3:62317000 3'AG 62317000 Downstream 52bp
chr3 62317051 62317051 1 + C T LGG 62317049 + 62317029 62317069 41 GACCAGGATTCACCCACTTCCACGGCCTGAGGTGGTTTCTC GACCAGGATTCACCCACTTCCATGGCCTGAGGTGGTTTCTC < 41bp 0.776956782367846 0.518964393950481 0.71712005 0.87414366 prediction 0.515984776834731 Functional Loss - C3orf14 ENSG00000114405 CDS Human protein_coding chr3:62317049 chr3:62317051 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_62813 0 0 0 0 2 C3orf14 chr3:62317074 5'GT 62317074 Upstream 24bp
chr19 7711219 7711219 1 + G C GBM 7711215 + 7711195 7711235 41 TCCCGCTGGACCCCGGTCATCAAGGATGTAATGGAGGTACT TCCCGCTGGACCCCGGTCATCAAGCATGTAATGGAGGTACT < 41bp 0.813162038492823 0.55517865807432 0.8995801 0.36610135 prediction 0.515966760837005 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7711215 chr19:7711219 nonsynonymous SNV 0.991 4 25 hm5C_associated_SNPs_62814 0 0 1 1 2 STXBP2 chr19:7711135 3'AG 7711135 Downstream 85bp
chr19 7711219 7711219 1 + G C GBM 7711215 + 7711195 7711235 41 TCCCGCTGGACCCCGGTCATCAAGGATGTAATGGAGGTACT TCCCGCTGGACCCCGGTCATCAAGCATGTAATGGAGGTACT < 41bp 0.813162038492823 0.55517865807432 0.8995801 0.36610135 prediction 0.515966760837005 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7711215 chr19:7711219 nonsynonymous SNV 0.991 4 25 hm5C_associated_SNPs_62814 0 0 1 1 2 STXBP2 chr19:7711230 5'GT 7711230 Upstream 12bp
chr1 43166659 43166659 1 + C T LUSC 43166657 + 43166637 43166677 41 CAGCTGAGAATTCGTCCGCTCCCGAGGCTGAGCAGGGCGGG CAGCTGAGAATTCGTCCGCTCCTGAGGCTGAGCAGGGCGGG < 41bp 0.796475734923786 0.53849905356673 0.5657759 0.3605681 prediction 0.515953362714113 Functional Loss - YBX1 ENSG00000065978 CDS Human protein_coding chr1:43166657 chr1:43166659 synonymous SNV . 0 23 hm5C_associated_SNPs_62816 0 0 1 0 1 YBX1 chr1:43166717 5'GT 43166717 Upstream 59bp
chr17 73809265 73809265 1 + G T SARC 73809263 + 73809243 73809283 41 ACTACCACAACAGCAAGGACCGGCGGCGGAGCCCCCGGAAG ACTACCACAACAGCAAGGACCGTCGGCGGAGCCCCCGGAAG < 41bp 0.757969874911394 0.397487098788844 0.7630626 0.28562337 prediction 0.515939749822788 Functional Loss - UNK ENSG00000132478 CDS Human protein_coding chr17:73809263 chr17:73809265 synonymous SNV . 0 23 hm5C_associated_SNPs_62817 0 0 1 0 1 UNK chr17:73809294 5'GT 73809294 Upstream 30bp
chr8 11420536 11420536 1 + G T LUAD 11420534 + 11420514 11420554 41 GCCCCGGAAGCCATCCACTTCGGGGTCTTCACCATCAAAGC GCCCCGGAAGCCATCCACTTCGTGGTCTTCACCATCAAAGC < 41bp 0.888279239664677 0.630311844967978 0.9014398 0.10176775 prediction 0.515934789393397 Functional Loss - BLK ENSG00000136573 CDS Human protein_coding chr8:11420534 chr8:11420536 nonsynonymous SNV 0.920 5 23 hm5C_associated_SNPs_62818 0 0 0 0 2 BLK chr8:11420488 3'AG 11420488 Downstream 49bp
chr8 11420536 11420536 1 + G T LUAD 11420534 + 11420514 11420554 41 GCCCCGGAAGCCATCCACTTCGGGGTCTTCACCATCAAAGC GCCCCGGAAGCCATCCACTTCGTGGTCTTCACCATCAAAGC < 41bp 0.888279239664677 0.630311844967978 0.9014398 0.10176775 prediction 0.515934789393397 Functional Loss - BLK ENSG00000136573 CDS Human protein_coding chr8:11420534 chr8:11420536 nonsynonymous SNV 0.920 5 23 hm5C_associated_SNPs_62818 0 0 0 0 2 BLK chr8:11420619 5'GT 11420619 Upstream 84bp
chr2 71187160 71187160 1 + C T UCEC 71187158 + 71187138 71187178 41 ACGTCATGAACAGCATTGCCCGCGGCCAGAAGATCCCCATC ACGTCATGAACAGCATTGCCCGTGGCCAGAAGATCCCCATC < 41bp 0.758537161658463 0.500580796868833 0.26897502 0.07838419 prediction 0.51591272957926 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71187158 chr2:71187160 synonymous SNV . 0 23 hm5C_associated_SNPs_62819 0 0 0 0 2 ATP6V1B1 chr2:71187069 3'AG 71187069 Downstream 92bp
chr2 71187160 71187160 1 + C T UCEC 71187158 + 71187138 71187178 41 ACGTCATGAACAGCATTGCCCGCGGCCAGAAGATCCCCATC ACGTCATGAACAGCATTGCCCGTGGCCAGAAGATCCCCATC < 41bp 0.758537161658463 0.500580796868833 0.26897502 0.07838419 prediction 0.51591272957926 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71187158 chr2:71187160 synonymous SNV . 0 23 hm5C_associated_SNPs_62819 0 0 0 0 2 ATP6V1B1 chr2:71187208 5'GT 71187208 Upstream 49bp
chr18 29054134 29054134 1 + G T UCEC 29054132 + 29054112 29054152 41 CACAGCGGTGGAAGGCACTTCAGGAATGGAAATGACCACTA CACAGCGGTGGAAGGCACTTCATGAATGGAAATGACCACTA < 41bp 0.877437801274417 0.61948494768767 0.6621727 0.21421483 prediction 0.515905707173494 Functional Loss - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29054132 chr18:29054134 stopgain 0.859 1 23 hm5C_associated_SNPs_62822 0 0 0 0 1 DSG3 chr18:29054084 3'AG 29054084 Downstream 51bp
chr19 36035879 36035879 1 + C T BRCA 36035877 + 36035857 36035897 41 ATGCTAAGGCCGGCATTGCGCTCAATGACAATTTCGTGAAG ATGCTAAGGCCGGCATTGCGCTTAATGACAATTTCGTGAAG < 41bp 0.807785938592523 0.5498381739493 0.0051785707 0.0065790713 prediction 0.515895529286448 Functional Loss - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36035877 chr19:36035879 synonymous SNV . 0 23 hm5C_associated_SNPs_62823 0 0 0 0 2 GAPDHS chr19:36035811 3'AG 36035811 Downstream 69bp
chr19 36035879 36035879 1 + C T BRCA 36035877 + 36035857 36035897 41 ATGCTAAGGCCGGCATTGCGCTCAATGACAATTTCGTGAAG ATGCTAAGGCCGGCATTGCGCTTAATGACAATTTCGTGAAG < 41bp 0.807785938592523 0.5498381739493 0.0051785707 0.0065790713 prediction 0.515895529286448 Functional Loss - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36035877 chr19:36035879 synonymous SNV . 0 23 hm5C_associated_SNPs_62823 0 0 0 0 2 GAPDHS chr19:36035908 5'GT 36035908 Upstream 30bp
chr22 39483104 39483104 1 + G T BLCA 39483102 + 39483082 39483122 41 TAGATGAGCACAGCCAAGACCTGAGTGGGAGGCTGCGGGCC TAGATGAGCACAGCCAAGACCTTAGTGGGAGGCTGCGGGCC < 41bp 0.757946225543243 0.41607175835362 0.5582852 0.37227526 prediction 0.515892451086486 Functional Loss - APOBEC3G ENSG00000239713 CDS Human protein_coding chr22:39483102 chr22:39483104 synonymous SNV . 0 23 hm5C_associated_SNPs_62824 0 0 0 0 2 APOBEC3G chr22:39483016 3'AG 39483016 Downstream 89bp
chr22 39483104 39483104 1 + G T BLCA 39483102 + 39483082 39483122 41 TAGATGAGCACAGCCAAGACCTGAGTGGGAGGCTGCGGGCC TAGATGAGCACAGCCAAGACCTTAGTGGGAGGCTGCGGGCC < 41bp 0.757946225543243 0.41607175835362 0.5582852 0.37227526 prediction 0.515892451086486 Functional Loss - APOBEC3G ENSG00000239713 CDS Human protein_coding chr22:39483102 chr22:39483104 synonymous SNV . 0 23 hm5C_associated_SNPs_62824 0 0 0 0 2 APOBEC3G chr22:39483131 5'GT 39483131 Upstream 28bp
chr11 33680365 33680365 1 + C T COAD 33680363 + 33680343 33680383 41 GGCCCGAGCCGGCCCAGCTGCACGACAGCGCCTCCTTCACG GGCCCGAGCCGGCCCAGCTGCATGACAGCGCCTCCTTCACG < 41bp 0.75793381824101 0.486789267389458 0.27688843 0.36809367 prediction 0.515867636482021 Functional Loss - KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33680363 chr11:33680365 synonymous SNV . 0 23 hm5C_associated_SNPs_62829 0 0 0 0 2 KIAA1549L chr11:33680296 3'AG 33680296 Downstream 70bp
chr11 33680365 33680365 1 + C T COAD 33680363 + 33680343 33680383 41 GGCCCGAGCCGGCCCAGCTGCACGACAGCGCCTCCTTCACG GGCCCGAGCCGGCCCAGCTGCATGACAGCGCCTCCTTCACG < 41bp 0.75793381824101 0.486789267389458 0.27688843 0.36809367 prediction 0.515867636482021 Functional Loss - KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33680363 chr11:33680365 synonymous SNV . 0 23 hm5C_associated_SNPs_62829 0 0 0 0 2 KIAA1549L chr11:33680444 5'GT 33680444 Upstream 80bp
chr3 14803078 14803078 1 + G T UCEC 14803076 + 14803056 14803096 41 AACAGATCTTCCGGTCTCAACAGGATTACAAGATGGGCTAC AACAGATCTTCCGGTCTCAACATGATTACAAGATGGGCTAC < 41bp 0.880724457481311 0.622799219994108 0.77190524 0.17730382 prediction 0.515850474974405 Functional Loss - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14803076 chr3:14803078 nonsynonymous SNV 0.759 0 23 hm5C_associated_SNPs_62830 0 0 0 0 2 C3orf20 chr3:14802980 3'AG 14802980 Downstream 99bp
chr3 14803078 14803078 1 + G T UCEC 14803076 + 14803056 14803096 41 AACAGATCTTCCGGTCTCAACAGGATTACAAGATGGGCTAC AACAGATCTTCCGGTCTCAACATGATTACAAGATGGGCTAC < 41bp 0.880724457481311 0.622799219994108 0.77190524 0.17730382 prediction 0.515850474974405 Functional Loss - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14803076 chr3:14803078 nonsynonymous SNV 0.759 0 23 hm5C_associated_SNPs_62830 0 0 0 0 2 C3orf20 chr3:14803122 5'GT 14803122 Upstream 45bp
chrX 152685761 152685761 1 + G T ACC 152685759 + 152685739 152685779 41 CCCTGGGTAGCAGACATCCCCAGAACCTGGGCCACCGCAGG CCCTGGGTAGCAGACATCCCCATAACCTGGGCCACCGCAGG < 41bp 0.757921864878792 0.40647883485771 0.8717489 0.20419109 prediction 0.515843729757584 Functional Loss - ZFP92 ENSG00000189420 CDS Human protein_coding chrX:152685759 chrX:152685761 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_62831 0 0 0 0 2 ZFP92 chrX:152685686 3'AG 152685686 Downstream 76bp
chrX 152685761 152685761 1 + G T ACC 152685759 + 152685739 152685779 41 CCCTGGGTAGCAGACATCCCCAGAACCTGGGCCACCGCAGG CCCTGGGTAGCAGACATCCCCATAACCTGGGCCACCGCAGG < 41bp 0.757921864878792 0.40647883485771 0.8717489 0.20419109 prediction 0.515843729757584 Functional Loss - ZFP92 ENSG00000189420 CDS Human protein_coding chrX:152685759 chrX:152685761 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_62831 0 0 0 0 2 ZFP92 chrX:152685790 5'GT 152685790 Upstream 30bp
chr1 182828207 182828207 1 + G T STAD 182828204 + 182828184 182828224 41 GAGCAAATAAGCATGGACCTCAAGAATGAATTGATGTACCA GAGCAAATAAGCATGGACCTCAATAATGAATTGATGTACCA < 41bp 0.757917609327299 0.38271167561143 0.1800057 0.20731732 prediction 0.515835218654598 Functional Loss - DHX9 ENSG00000135829 CDS Human protein_coding chr1:182828204 chr1:182828207 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_62832 0 0 1 0 2 DHX9 chr1:182828175 3'AG 182828175 Downstream 33bp
chr1 182828207 182828207 1 + G T STAD 182828204 + 182828184 182828224 41 GAGCAAATAAGCATGGACCTCAAGAATGAATTGATGTACCA GAGCAAATAAGCATGGACCTCAATAATGAATTGATGTACCA < 41bp 0.757917609327299 0.38271167561143 0.1800057 0.20731732 prediction 0.515835218654598 Functional Loss - DHX9 ENSG00000135829 CDS Human protein_coding chr1:182828204 chr1:182828207 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_62832 0 0 1 0 2 DHX9 chr1:182828252 5'GT 182828252 Upstream 46bp
chr20 61453155 61453155 1 + G C UCEC 61453151 + 61453131 61453171 41 CCCCAGGTGGGATCGGCCTCCGCGGCCCCCCGGTGAGTGGC CCCCAGGTGGGATCGGCCTCCGCGCCCCCCCGGTGAGTGGC < 41bp 0.805754679304862 0.5478453264149 0.88961816 0.8330183 prediction 0.515818705779924 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61453151 chr20:61453155 nonsynonymous SNV 0.892 2 25 hm5C_associated_SNPs_62833 0 0 1 0 2 COL9A3 chr20:61453109 3'AG 61453109 Downstream 47bp
chr20 61453155 61453155 1 + G C UCEC 61453151 + 61453131 61453171 41 CCCCAGGTGGGATCGGCCTCCGCGGCCCCCCGGTGAGTGGC CCCCAGGTGGGATCGGCCTCCGCGCCCCCCCGGTGAGTGGC < 41bp 0.805754679304862 0.5478453264149 0.88961816 0.8330183 prediction 0.515818705779924 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61453151 chr20:61453155 nonsynonymous SNV 0.892 2 25 hm5C_associated_SNPs_62833 0 0 1 0 2 COL9A3 chr20:61453162 5'GT 61453162 Upstream 8bp
chr5 65054608 65054608 1 + G C BLCA 65054607 + 65054587 65054627 41 GGTATTGAGGAAGTAACTTACGAGAACTGTCTGCAGGCACT GGTATTGAGGAAGTAACTTACCAGAACTGTCTGCAGGCACT < 41bp 0.757896617248127 0.468062008571542 0.8896871 0.5145788 prediction 0.515793234496254 Functional Loss - NLN ENSG00000123213 CDS Human protein_coding chr5:65054607 chr5:65054608 nonsynonymous SNV 0.920 4 22 hm5C_associated_SNPs_62835 0 0 1 0 1 NLN chr5:65054653 5'GT 65054653 Upstream 46bp
chrX 134679422 134679422 1 + C T COAD 134679420 + 134679400 134679440 41 AGGCTTCTGGACTGACTACTCTCGGTCAGGCTCTAAGATCC AGGCTTCTGGACTGACTACTCTTGGTCAGGCTCTAAGATCC < 41bp 0.807297264978039 0.549412278093859 0.17029268 0.131235 prediction 0.51576997376836 Functional Loss - INTS6L ENSG00000165359 CDS Human protein_coding chrX:134679420 chrX:134679422 synonymous SNV . 0 23 hm5C_associated_SNPs_62838 0 0 0 0 2 INTS6L chrX:134679348 3'AG 134679348 Downstream 75bp
chrX 134679422 134679422 1 + C T COAD 134679420 + 134679400 134679440 41 AGGCTTCTGGACTGACTACTCTCGGTCAGGCTCTAAGATCC AGGCTTCTGGACTGACTACTCTTGGTCAGGCTCTAAGATCC < 41bp 0.807297264978039 0.549412278093859 0.17029268 0.131235 prediction 0.51576997376836 Functional Loss - INTS6L ENSG00000165359 CDS Human protein_coding chrX:134679420 chrX:134679422 synonymous SNV . 0 23 hm5C_associated_SNPs_62838 0 0 0 0 2 INTS6L chrX:134679497 5'GT 134679497 Upstream 76bp
chr14 70459158 70459158 1 + C T UCEC 70459156 + 70459136 70459176 41 GACGGGTCTAAGCCGACACCCACGATGGAGACCCAGCCGGT GACGGGTCTAAGCCGACACCCATGATGGAGACCCAGCCGGT < 41bp 0.80920477989028 0.551346790295286 0.20821229 0.28748974 prediction 0.515715979189986 Functional Loss - SMOC1 ENSG00000198732 CDS Human protein_coding chr14:70459156 chr14:70459158 nonsynonymous SNV 0.972 4 23 hm5C_associated_SNPs_62840 0 0 1 0 2 SMOC1 chr14:70459134 3'AG 70459134 Downstream 25bp
chr14 70459158 70459158 1 + C T UCEC 70459156 + 70459136 70459176 41 GACGGGTCTAAGCCGACACCCACGATGGAGACCCAGCCGGT GACGGGTCTAAGCCGACACCCATGATGGAGACCCAGCCGGT < 41bp 0.80920477989028 0.551346790295286 0.20821229 0.28748974 prediction 0.515715979189986 Functional Loss - SMOC1 ENSG00000198732 CDS Human protein_coding chr14:70459156 chr14:70459158 nonsynonymous SNV 0.972 4 23 hm5C_associated_SNPs_62840 0 0 1 0 2 SMOC1 chr14:70459190 5'GT 70459190 Upstream 33bp
chr11 70194497 70194497 1 + G T BLCA 70194494 + 70194474 70194514 41 GGATCCCTCACAGCCCAGCTCGGGAAGTGGACAGACTGGGC GGATCCCTCACAGCCCAGCTCGGTAAGTGGACAGACTGGGC < 41bp 0.909653027218472 0.651796156436377 0.93425643 0.3507002 prediction 0.515713741564189 Functional Loss - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70194494 chr11:70194497 stopgain 0.991 1 24 hm5C_associated_SNPs_62841 0 0 1 0 1 PPFIA1 chr11:70194526 5'GT 70194526 Upstream 30bp
chr14 65054903 65054903 1 + C T LUAD 65054901 + 65054881 65054921 41 TGTCTACTCTGCTGCCATCTCTCAGAGAAAAAGCTCAAAAC TGTCTACTCTGCTGCCATCTCTTAGAGAAAAAGCTCAAAAC < 41bp 0.757844449787972 0.483650170154262 0.24055788 0.18589783 prediction 0.515688899575945 Functional Loss - PPP1R36 ENSG00000165807 CDS Human protein_coding chr14:65054901 chr14:65054903 synonymous SNV . 0 23 hm5C_associated_SNPs_62843 0 0 0 0 1 PPP1R36 chr14:65054822 3'AG 65054822 Downstream 82bp
chr5 80604490 80604490 1 + C T LGG 80604488 + 80604468 80604508 41 ACAGGTGTGGGTCCACAGAGCACGAAATAACCAAGTGTAAG ACAGGTGTGGGTCCACAGAGCATGAAATAACCAAGTGTAAG < 41bp 0.757832319922572 0.494343424490558 0.14442152 0.1786991 prediction 0.515664639845145 Functional Loss - ZCCHC9 ENSG00000131732 CDS Human protein_coding chr5:80604488 chr5:80604490 synonymous SNV . 0 23 hm5C_associated_SNPs_62846 0 0 1 0 1 ZCCHC9 chr5:80604530 5'GT 80604530 Upstream 41bp
chr19 51359545 51359545 1 + G T UCEC 51359542 + 51359522 51359562 41 ATTGTGGGAGGCTGGGAGTGCGAGAAGCATTCCCAACCCTG ATTGTGGGAGGCTGGGAGTGCGATAAGCATTCCCAACCCTG < 41bp 0.911302979629091 0.653470941200544 0.92470014 0.60622513 prediction 0.515664076857093 Functional Loss - KLK3 ENSG00000142515 CDS Human other chr19:51359542 chr19:51359545 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_62847 0 0 0 0 1 KLK3 chr19:51359496 3'AG 51359496 Downstream 50bp
chr16 67036992 67036992 1 + C T BLCA 67036990 + 67036970 67037010 41 CAGATGATGTCACCCCTAGCCTCGGGTCTCTTCCATCGGGC CAGATGATGTCACCCCTAGCCTTGGGTCTCTTCCATCGGGC < 41bp 0.792357342332548 0.534525801216428 0.3315786 0.21452197 prediction 0.515663082232241 Functional Loss - CES4A ENSG00000172824 CDS Human protein_coding chr16:67036990 chr16:67036992 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_62848 0 0 0 0 2 CES4A chr16:67036973 3'AG 67036973 Downstream 20bp
chr16 67036992 67036992 1 + C T BLCA 67036990 + 67036970 67037010 41 CAGATGATGTCACCCCTAGCCTCGGGTCTCTTCCATCGGGC CAGATGATGTCACCCCTAGCCTTGGGTCTCTTCCATCGGGC < 41bp 0.792357342332548 0.534525801216428 0.3315786 0.21452197 prediction 0.515663082232241 Functional Loss - CES4A ENSG00000172824 CDS Human protein_coding chr16:67036990 chr16:67036992 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_62848 0 0 0 0 2 CES4A chr16:67037077 5'GT 67037077 Upstream 86bp
chr16 66434680 66434680 1 + C T LUAD 66434678 + 66434658 66434698 41 GCCTTGGTGTTTCCAGATAACACGGCCAACATCACAGTCAA GCCTTGGTGTTTCCAGATAACATGGCCAACATCACAGTCAA < 41bp 0.757828799831201 0.494226117755943 0.47049868 0.48041573 prediction 0.515657599662402 Functional Loss - CDH5 ENSG00000179776 CDS Human protein_coding chr16:66434678 chr16:66434680 nonsynonymous SNV 0.988 3 23 hm5C_associated_SNPs_62849 0 0 0 0 1 CDH5 chr16:66434674 3'AG 66434674 Downstream 7bp
chr16 2577615 2577615 1 + C T COAD 2577613 + 2577593 2577633 41 GTCCCCATGGGGCAGGGGTCCTCGGTGAGTGGCTGACCTCC GTCCCCATGGGGCAGGGGTCCTTGGTGAGTGGCTGACCTCC < 41bp 0.764508425892413 0.50668344517512 0.870064 0.69977707 prediction 0.515649961434586 Functional Loss - AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2577613 chr16:2577615 synonymous SNV . 0 23 hm5C_associated_SNPs_62851 0 0 1 0 2 AMDHD2 chr16:2577562 3'AG 2577562 Downstream 54bp
chr16 2577615 2577615 1 + C T COAD 2577613 + 2577593 2577633 41 GTCCCCATGGGGCAGGGGTCCTCGGTGAGTGGCTGACCTCC GTCCCCATGGGGCAGGGGTCCTTGGTGAGTGGCTGACCTCC < 41bp 0.764508425892413 0.50668344517512 0.870064 0.69977707 prediction 0.515649961434586 Functional Loss - AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2577613 chr16:2577615 synonymous SNV . 0 23 hm5C_associated_SNPs_62851 0 0 1 0 2 AMDHD2 chr16:2577616 5'GT 2577616 Upstream 2bp
chr12 4854759 4854759 1 + G T LUAD 4854757 + 4854737 4854777 41 TACGATGCACTGCCACAAGCCTGGATTGATCTGCATGATGT TACGATGCACTGCCACAAGCCTTGATTGATCTGCATGATGT < 41bp 0.861160749742244 0.603336830036608 0.1746395 0.013675392 prediction 0.515647839411272 Functional Loss - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4854757 chr12:4854759 nonsynonymous SNV 0.246 4 23 hm5C_associated_SNPs_62852 0 0 0 0 1 GALNT8 chr12:4854792 5'GT 4854792 Upstream 34bp
chr17 74382142 74382142 1 + G T UCEC 74382139 + 74382119 74382159 41 AACCCGCGCGGCGGCAAGGGCAAGGCCTTGCAGCTCTTCCG AACCCGCGCGGCGGCAAGGGCAATGCCTTGCAGCTCTTCCG < 41bp 0.75781844345368 0.481426327725686 0.76501334 0.2443563 prediction 0.51563688690736 Functional Loss - SPHK1 ENSG00000176170 CDS Human protein_coding chr17:74382139 chr17:74382142 nonsynonymous SNV 0.992 0 24 hm5C_associated_SNPs_62854 0 0 1 0 2 SPHK1 chr17:74382066 3'AG 74382066 Downstream 77bp
chr17 74382142 74382142 1 + G T UCEC 74382139 + 74382119 74382159 41 AACCCGCGCGGCGGCAAGGGCAAGGCCTTGCAGCTCTTCCG AACCCGCGCGGCGGCAAGGGCAATGCCTTGCAGCTCTTCCG < 41bp 0.75781844345368 0.481426327725686 0.76501334 0.2443563 prediction 0.51563688690736 Functional Loss - SPHK1 ENSG00000176170 CDS Human protein_coding chr17:74382139 chr17:74382142 nonsynonymous SNV 0.992 0 24 hm5C_associated_SNPs_62854 0 0 1 0 2 SPHK1 chr17:74382218 5'GT 74382218 Upstream 77bp
chr9 66553466 66553466 1 + G C UCEC 66553465 + 66553445 66553485 41 GAGACTCAGGGCCAGCAACCCGGGTCCCAGCGGAGCGCCCG GAGACTCAGGGCCAGCAACCCCGGTCCCAGCGGAGCGCCCG < 41bp 0.822016463180815 0.56420185675779 0.9158182 0.85934687 prediction 0.51562921284605 Functional Loss - LOC403323;LOC728673 ENSG00000170161;ENSG00000234665 ncRNA_exonic Human other chr9:66553465 chr9:66553466 . . 0 22 hm5C_associated_SNPs_62855 0 0 0 0 1 LOC403323;LOC728673 chr9:66553558 5'GT 66553558 Upstream 93bp
chr20 44469372 44469372 1 + A C STAD 44469368 + 44469348 44469388 41 CGGACTTTGAGCGGCTGCACCGAAACCTGCAGCGGCAATTC CGGACTTTGAGCGGCTGCACCGAACCCTGCAGCGGCAATTC < 41bp 0.757805653515947 0.489054826992475 0.8657478 0.5246044 prediction 0.515611307031893 Functional Loss - SNX21 ENSG00000124104 CDS Human protein_coding chr20:44469368 chr20:44469372 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_62859 0 0 0 0 2 SNX21 chr20:44469278 3'AG 44469278 Downstream 95bp
chr20 44469372 44469372 1 + A C STAD 44469368 + 44469348 44469388 41 CGGACTTTGAGCGGCTGCACCGAAACCTGCAGCGGCAATTC CGGACTTTGAGCGGCTGCACCGAACCCTGCAGCGGCAATTC < 41bp 0.757805653515947 0.489054826992475 0.8657478 0.5246044 prediction 0.515611307031893 Functional Loss - SNX21 ENSG00000124104 CDS Human protein_coding chr20:44469368 chr20:44469372 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_62859 0 0 0 0 2 SNX21 chr20:44469419 5'GT 44469419 Upstream 48bp
chr16 1291318 1291318 1 + G C LIHC 1291314 + 1291294 1291334 41 TGGGTGCTGACCGCAGCGCACTGCGTGGGACCGTGAGTCTC TGGGTGCTGACCGCAGCGCACTGCCTGGGACCGTGAGTCTC < 41bp 0.801802500165321 0.54400068741796 0.41326466 0.21873513 prediction 0.515603625494722 Functional Loss - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291314 chr16:1291318 nonsynonymous SNV 0.644 0 25 hm5C_associated_SNPs_62861 0 0 0 0 1 TPSAB1 chr16:1291325 5'GT 1291325 Upstream 8bp
chr6 108496068 108496068 1 + G T COAD 108496066 + 108496046 108496086 41 TGTCCGGTGGACAAGACGCACAGAAACCAGTGCAGGGCGTG TGTCCGGTGGACAAGACGCACATAAACCAGTGCAGGGCGTG < 41bp 0.757788893728417 0.403805899567643 0.42367285 0.07221654 prediction 0.515577787456834 Functional Loss - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108496066 chr6:108496068 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_62863 0 0 0 0 2 NR2E1 chr6:108496040 3'AG 108496040 Downstream 29bp
chr6 108496068 108496068 1 + G T COAD 108496066 + 108496046 108496086 41 TGTCCGGTGGACAAGACGCACAGAAACCAGTGCAGGGCGTG TGTCCGGTGGACAAGACGCACATAAACCAGTGCAGGGCGTG < 41bp 0.757788893728417 0.403805899567643 0.42367285 0.07221654 prediction 0.515577787456834 Functional Loss - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108496066 chr6:108496068 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_62863 0 0 0 0 2 NR2E1 chr6:108496127 5'GT 108496127 Upstream 60bp
chr7 64498882 64498882 1 + G T LUAD 64498880 + 64498860 64498900 41 GAGGCAGAAGGAGCGGGACCCCGAGCACCGGGCCCTCTGCG GAGGCAGAAGGAGCGGGACCCCTAGCACCGGGCCCTCTGCG < 41bp 0.757785229948157 0.421254325215689 0.7046201 0.3519153 prediction 0.515570459896314 Functional Loss - CCT6P3 ENSG00000234585;ENSG00000239985 ncRNA_exonic Human other chr7:64498880 chr7:64498882 . . 0 23 hm5C_associated_SNPs_62864 0 0 1 0 1 CCT6P3 chr7:64498943 5'GT 64498943 Upstream 62bp
chr1 55457569 55457569 1 + G T UCEC 55457566 + 55457546 55457586 41 GCCGTGAGCTTCCCAGTGGCCGAGGGGCCCCCAACACCACC GCCGTGAGCTTCCCAGTGGCCGATGGGCCCCCAACACCACC < 41bp 0.914261312678702 0.656480894454441 0.8519446 0.17060101 prediction 0.515560836448523 Functional Loss - TMEM61 ENSG00000143001 CDS Human protein_coding chr1:55457566 chr1:55457569 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_62865 0 0 0 0 1 TMEM61 chr1:55457509 3'AG 55457509 Downstream 61bp
chr16 30997003 30997003 1 + G T UCEC 30997001 + 30996981 30997021 41 TGGCCGACTCTGCACAGGCCCAGAAGCTGGTGTACCTGGTC TGGCCGACTCTGCACAGGCCCATAAGCTGGTGTACCTGGTC < 41bp 0.757777446941914 0.405183808982128 0.7031827 0.19232509 prediction 0.515554893883827 Functional Loss - HSD3B7 ENSG00000099377;ENSG00000268863 CDS Human other chr16:30997001 chr16:30997003 nonsynonymous SNV 0.687 0 23 hm5C_associated_SNPs_62867 0 0 1 0 1 HSD3B7 chr16:30996974 3'AG 30996974 Downstream 30bp
chr17 78972194 78972194 1 + C T CESC 78972192 + 78972172 78972212 41 ATAGAGCTGCCAGAGGTTCCCTCCGAGCCCCTTCCTGAGAA ATAGAGCTGCCAGAGGTTCCCTTCGAGCCCCTTCCTGAGAA < 41bp 0.757771552992572 0.487492865786028 0.8423083 0.09339857 prediction 0.515543105985143 Functional Loss - CHMP6 ENSG00000176108 CDS Human protein_coding chr17:78972192 chr17:78972194 nonsynonymous SNV 0.951 1 23 hm5C_associated_SNPs_62868 0 0 1 0 2 CHMP6 chr17:78972166 3'AG 78972166 Downstream 29bp
chr17 78972194 78972194 1 + C T CESC 78972192 + 78972172 78972212 41 ATAGAGCTGCCAGAGGTTCCCTCCGAGCCCCTTCCTGAGAA ATAGAGCTGCCAGAGGTTCCCTTCGAGCCCCTTCCTGAGAA < 41bp 0.757771552992572 0.487492865786028 0.8423083 0.09339857 prediction 0.515543105985143 Functional Loss - CHMP6 ENSG00000176108 CDS Human protein_coding chr17:78972192 chr17:78972194 nonsynonymous SNV 0.951 1 23 hm5C_associated_SNPs_62868 0 0 1 0 2 CHMP6 chr17:78972220 5'GT 78972220 Upstream 27bp
chr17 36887606 36887606 1 + G C BRCA 36887605 + 36887585 36887625 41 CCTAGAACCCCAGCCAGGTCCGTGGTGGCCCTGAAGACCCC CCTAGAACCCCAGCCAGGTCCCTGGTGGCCCTGAAGACCCC < 41bp 0.757769902776206 0.434895245824602 0.4147608 0.20957488 prediction 0.515539805552412 Functional Loss - CISD3 ENSG00000230055 CDS Human other chr17:36887605 chr17:36887606 nonsynonymous SNV 0.868 0 22 hm5C_associated_SNPs_62869 0 0 1 0 2 CISD3 chr17:36887573 3'AG 36887573 Downstream 34bp
chr17 36887606 36887606 1 + G C BRCA 36887605 + 36887585 36887625 41 CCTAGAACCCCAGCCAGGTCCGTGGTGGCCCTGAAGACCCC CCTAGAACCCCAGCCAGGTCCCTGGTGGCCCTGAAGACCCC < 41bp 0.757769902776206 0.434895245824602 0.4147608 0.20957488 prediction 0.515539805552412 Functional Loss - CISD3 ENSG00000230055 CDS Human other chr17:36887605 chr17:36887606 nonsynonymous SNV 0.868 0 22 hm5C_associated_SNPs_62869 0 0 1 0 2 CISD3 chr17:36887692 5'GT 36887692 Upstream 87bp
chr3 133494350 133494350 1 + G T COAD 133494347 + 133494327 133494367 41 TTGCTGTGCCTTGATGGTACCAGGAAACCTGTGGAGGAGTA TTGCTGTGCCTTGATGGTACCAGTAAACCTGTGGAGGAGTA < 41bp 0.757765922384934 0.367861757265136 0.55094993 0.21657154 prediction 0.515531844769869 Functional Loss - TF ENSG00000091513 CDS Human protein_coding chr3:133494347 chr3:133494350 nonsynonymous SNV 0.045 4 24 hm5C_associated_SNPs_62870 0 0 1 0 1 TF chr3:133494277 3'AG 133494277 Downstream 74bp
chr10 115345664 115345664 1 + A T UCEC 115345660 + 115345640 115345680 41 TGATGACAGTATGATCTGTGCAGGAAATCTTCAGAAACCTG TGATGACAGTATGATCTGTGCAGGTAATCTTCAGAAACCTG < 41bp 0.757763511032632 0.440293859020823 0.16217124 0.22784436 prediction 0.515527022065263 Functional Loss - HABP2 ENSG00000148702 CDS Human protein_coding chr10:115345660 chr10:115345664 synonymous SNV . 0 25 hm5C_associated_SNPs_62872 0 0 0 0 1 HABP2 chr10:115345697 5'GT 115345697 Upstream 34bp
chr3 10106509 10106509 1 + G T GBM 10106507 + 10106487 10106527 41 TCCTGCCGCTGCTGTTTTCTCAGGACTTTGCAAAAGATGGG TCCTGCCGCTGCTGTTTTCTCATGACTTTGCAAAAGATGGG < 41bp 0.876703295974349 0.618939898648505 0.85476875 0.20890617 prediction 0.515526794651689 Functional Loss - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10106507 chr3:10106509 nonsynonymous SNV 0.349 0 23 hm5C_associated_SNPs_62873 0 0 1 0 2 FANCD2 chr3:10106413 3'AG 10106413 Downstream 97bp
chr3 10106509 10106509 1 + G T GBM 10106507 + 10106487 10106527 41 TCCTGCCGCTGCTGTTTTCTCAGGACTTTGCAAAAGATGGG TCCTGCCGCTGCTGTTTTCTCATGACTTTGCAAAAGATGGG < 41bp 0.876703295974349 0.618939898648505 0.85476875 0.20890617 prediction 0.515526794651689 Functional Loss - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10106507 chr3:10106509 nonsynonymous SNV 0.349 0 23 hm5C_associated_SNPs_62873 0 0 1 0 2 FANCD2 chr3:10106559 5'GT 10106559 Upstream 51bp
chr12 57958726 57958726 1 + C T HNSC 57958724 + 57958704 57958744 41 CCAAGACAAATCTGTCCGTGCACGAGGACAAGAACCGGGTG CCAAGACAAATCTGTCCGTGCATGAGGACAAGAACCGGGTG < 41bp 0.793768736357846 0.536020697936425 0.34738037 0.3096465 prediction 0.515496076842842 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57958724 chr12:57958726 synonymous SNV . 0 23 hm5C_associated_SNPs_62874 1 0 0 0 2 KIF5A chr12:57958701 3'AG 57958701 Downstream 26bp
chr12 57958726 57958726 1 + C T HNSC 57958724 + 57958704 57958744 41 CCAAGACAAATCTGTCCGTGCACGAGGACAAGAACCGGGTG CCAAGACAAATCTGTCCGTGCATGAGGACAAGAACCGGGTG < 41bp 0.793768736357846 0.536020697936425 0.34738037 0.3096465 prediction 0.515496076842842 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57958724 chr12:57958726 synonymous SNV . 0 23 hm5C_associated_SNPs_62874 1 0 0 0 2 KIF5A chr12:57958756 5'GT 57958756 Upstream 31bp
chr1 155581999 155581999 1 + C T PAAD 155581997 + 155581977 155582017 41 TCCAGATCCTGTGTGACCTGCACGATGGCTTCTCTGGGGTA TCCAGATCCTGTGTGACCTGCATGATGGCTTCTCTGGGGTA < 41bp 0.757742956075883 0.489745639239605 0.33313525 0.3309161 prediction 0.515485912151765 Functional Loss - MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155581997 chr1:155581999 synonymous SNV . 0 23 hm5C_associated_SNPs_62875 0 0 1 0 1 MSTO1 chr1:155581973 3'AG 155581973 Downstream 27bp
chr1 3649318 3649318 1 + G C BLCA 3649314 + 3649294 3649334 41 GCGCCGGCCTCTCGCAGGACCTGGGGGCCCTGAAGATCCCC GCGCCGGCCTCTCGCAGGACCTGGCGGCCCTGAAGATCCCC < 41bp 0.782836081024716 0.525102566621784 0.38797653 0.14777634 prediction 0.515467028805863 Functional Loss - TP73 ENSG00000078900 CDS Human protein_coding chr1:3649314 chr1:3649318 nonsynonymous SNV 0.876 3 25 hm5C_associated_SNPs_62878 0 0 0 0 1 TP73 chr1:3649311 3'AG 3649311 Downstream 8bp
chr17 43907866 43907866 1 + G T SARC 43907864 + 43907844 43907884 41 TGTTCGGCGAGGGCTGCTACCTGCACACAGCCATCGTGCTC TGTTCGGCGAGGGCTGCTACCTTCACACAGCCATCGTGCTC < 41bp 0.790750515115063 0.53301743786875 0.18260351 0.21799162 prediction 0.515466154492626 Functional Loss - CRHR1;LINC02210-CRHR1 ENSG00000120088 CDS Human protein_coding chr17:43907864 chr17:43907866 synonymous SNV 1.000 0 23 hm5C_associated_SNPs_62880 0 0 0 0 2 CRHR1;LINC02210-CRHR1 chr17:43907783 3'AG 43907783 Downstream 84bp
chr17 43907866 43907866 1 + G T SARC 43907864 + 43907844 43907884 41 TGTTCGGCGAGGGCTGCTACCTGCACACAGCCATCGTGCTC TGTTCGGCGAGGGCTGCTACCTTCACACAGCCATCGTGCTC < 41bp 0.790750515115063 0.53301743786875 0.18260351 0.21799162 prediction 0.515466154492626 Functional Loss - CRHR1;LINC02210-CRHR1 ENSG00000120088 CDS Human protein_coding chr17:43907864 chr17:43907866 synonymous SNV 1.000 0 23 hm5C_associated_SNPs_62880 0 0 0 0 2 CRHR1;LINC02210-CRHR1 chr17:43907936 5'GT 43907936 Upstream 71bp
chr21 40762734 40762734 1 + A T LUSC 40762730 + 40762710 40762750 41 CAACATGATGGACGAGTTTGCCAGATATGCCAGGCTGGAAA CAACATGATGGACGAGTTTGCCAGTTATGCCAGGCTGGAAA < 41bp 0.757731815036226 0.453967995810982 0.894971 0.2922039 prediction 0.515463630072453 Functional Loss - WRB;WRB-SH3BGR ENSG00000182093 CDS Human protein_coding chr21:40762730 chr21:40762734 nonsynonymous SNV 0.334 3 25 hm5C_associated_SNPs_62881 0 0 1 0 1 WRB;WRB-SH3BGR chr21:40762789 5'GT 40762789 Upstream 56bp
chr7 24324916 24324916 1 + C T CESC 24324914 + 24324894 24324934 41 TGACCCTCGCCCTGTCCCTGCTCGTGTGCCTGGGTGCGCTG TGACCCTCGCCCTGTCCCTGCTTGTGTGCCTGGGTGCGCTG < 41bp 0.757730750662049 0.486377499762453 0.31372052 0.12968609 prediction 0.515461501324098 Functional Loss - NPY ENSG00000122585 CDS Human protein_coding chr7:24324914 chr7:24324916 synonymous SNV . 0 23 hm5C_associated_SNPs_62882 0 0 0 0 1 NPY chr7:24324860 3'AG 24324860 Downstream 57bp
chr16 67201791 67201791 1 + C T CESC 67201789 + 67201769 67201809 41 AAGGGAAAGGGAGCTTCAGCCCCGAGGGGCCCAGGAATGCC AAGGGAAAGGGAGCTTCAGCCCTGAGGGGCCCAGGAATGCC < 41bp 0.790045852300549 0.532330126170554 0.25800723 0.23353645 prediction 0.51543145225999 Functional Loss - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67201789 chr16:67201791 stopgain . 0 23 hm5C_associated_SNPs_62885 0 0 1 0 2 HSF4 chr16:67201727 3'AG 67201727 Downstream 65bp
chr16 67201791 67201791 1 + C T CESC 67201789 + 67201769 67201809 41 AAGGGAAAGGGAGCTTCAGCCCCGAGGGGCCCAGGAATGCC AAGGGAAAGGGAGCTTCAGCCCTGAGGGGCCCAGGAATGCC < 41bp 0.790045852300549 0.532330126170554 0.25800723 0.23353645 prediction 0.51543145225999 Functional Loss - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67201789 chr16:67201791 stopgain . 0 23 hm5C_associated_SNPs_62885 0 0 1 0 2 HSF4 chr16:67201850 5'GT 67201850 Upstream 60bp
chr19 16976289 16976289 1 + T C rs2303091 16976288 + 16976268 16976308 41 AAGTGTGCAGAAGAAGCTATCTCGGATGGCGCCGGAAGACC AAGTGTGCAGAAGAAGCTATCCCGGATGGCGCCGGAAGACC < 41bp 0.757709239000007 0.497763133984104 0.6944169 0.36932224 prediction 0.515418478000014 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16976288 chr19:16976289 synonymous SNV . 0 22 hm5C_associated_SNPs_62887 0 0 1 0 1 SIN3B chr19:16976221 3'AG 16976221 Downstream 69bp
chr19 16976290 16976290 1 + C T SKCM 16976288 + 16976268 16976308 41 AAGTGTGCAGAAGAAGCTATCTCGGATGGCGCCGGAAGACC AAGTGTGCAGAAGAAGCTATCTTGGATGGCGCCGGAAGACC < 41bp 0.757709239000007 0.4837247759957 0.6944169 0.30061728 prediction 0.515418478000014 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16976288 chr19:16976290 nonsynonymous SNV 0.410 4 23 hm5C_associated_SNPs_62888 0 0 1 0 1 SIN3B chr19:16976221 3'AG 16976221 Downstream 70bp
chr10 51827690 51827690 1 + G T rs542796272 51827688 + 51827668 51827708 41 TCACGCCCCGGGCAGCTTGGCTGGGGCTAGGCTTCCGGGGC TCACGCCCCGGGCAGCTTGGCTTGGGCTAGGCTTCCGGGGC < 41bp 0.884450902487803 0.626750153887011 0.93278253 0.409684 prediction 0.515401497201585 Functional Loss - WASHC2A ENSG00000099290 UTR5 Human protein_coding chr10:51827688 chr10:51827690 . . 0 23 hm5C_associated_SNPs_62890 0 0 1 0 1 WASHC2A chr10:51827768 5'GT 51827768 Upstream 79bp
chr7 12683933 12683933 1 + G T UCEC 12683930 + 12683910 12683950 41 ACCTTAAGGATCCAAGAAGGCGAGGAGCCAGGTGTGTGCTC ACCTTAAGGATCCAAGAAGGCGATGAGCCAGGTGTGTGCTC < 41bp 0.757696777071118 0.371524046798648 0.83007634 0.3049596 prediction 0.515393554142237 Functional Loss - SCIN ENSG00000006747 CDS Human protein_coding chr7:12683930 chr7:12683933 nonsynonymous SNV 0.947 0 24 hm5C_associated_SNPs_62891 0 0 0 0 1 SCIN chr7:12683940 5'GT 12683940 Upstream 8bp
chr7 57522291 57522291 1 + G T LUSC 57522289 + 57522269 57522309 41 ACTACAGAAACCTGGTCTCCCTGGGTGAGGAAAACTTCAAT ACTACAGAAACCTGGTCTCCCTTGGTGAGGAAAACTTCAAT < 41bp 0.75768926244113 0.434443269400212 0.14631107 0.059958845 prediction 0.51537852488226 Functional Loss - ZNF716 ENSG00000182111 CDS Human protein_coding chr7:57522289 chr7:57522291 synonymous SNV . 0 23 hm5C_associated_SNPs_62894 0 0 0 0 1 ZNF716 chr7:57522292 5'GT 57522292 Upstream 2bp
chr19 39116703 39116703 1 + C T STAD 39116701 + 39116681 39116721 41 CAATCCGACAGATTTTGTACCTCGGGGACCTGCTGGAGACC CAATCCGACAGATTTTGTACCTTGGGGACCTGCTGGAGACC < 41bp 0.790106939724304 0.532426034969931 0.38180506 0.11659941 prediction 0.515361809508747 Functional Loss - EIF3K ENSG00000178982 CDS Human protein_coding chr19:39116701 chr19:39116703 synonymous SNV . 0 23 hm5C_associated_SNPs_62896 0 0 1 0 2 EIF3K chr19:39116668 3'AG 39116668 Downstream 36bp
chr19 39116703 39116703 1 + C T STAD 39116701 + 39116681 39116721 41 CAATCCGACAGATTTTGTACCTCGGGGACCTGCTGGAGACC CAATCCGACAGATTTTGTACCTTGGGGACCTGCTGGAGACC < 41bp 0.790106939724304 0.532426034969931 0.38180506 0.11659941 prediction 0.515361809508747 Functional Loss - EIF3K ENSG00000178982 CDS Human protein_coding chr19:39116701 chr19:39116703 synonymous SNV . 0 23 hm5C_associated_SNPs_62896 0 0 1 0 2 EIF3K chr19:39116742 5'GT 39116742 Upstream 40bp
chr8 145161325 145161325 1 + C T LGG 145161323 + 145161303 145161343 41 CTGAAACCACAGCTGTGGAACGCGGTGGACGAGGAGATCTG CTGAAACCACAGCTGTGGAACGTGGTGGACGAGGAGATCTG < 41bp 0.764866510182672 0.507198187257544 0.6430103 0.6197307 prediction 0.515336645850257 Functional Loss - MAF1 ENSG00000179632 CDS Human protein_coding chr8:145161323 chr8:145161325 nonsynonymous SNV 0.877 2 23 hm5C_associated_SNPs_62899 0 0 1 0 2 MAF1 chr8:145161246 3'AG 145161246 Downstream 80bp
chr8 145161325 145161325 1 + C T LGG 145161323 + 145161303 145161343 41 CTGAAACCACAGCTGTGGAACGCGGTGGACGAGGAGATCTG CTGAAACCACAGCTGTGGAACGTGGTGGACGAGGAGATCTG < 41bp 0.764866510182672 0.507198187257544 0.6430103 0.6197307 prediction 0.515336645850257 Functional Loss - MAF1 ENSG00000179632 CDS Human protein_coding chr8:145161323 chr8:145161325 nonsynonymous SNV 0.877 2 23 hm5C_associated_SNPs_62899 0 0 1 0 2 MAF1 chr8:145161367 5'GT 145161367 Upstream 43bp
chr20 2291762 2291762 1 + G T GBM 2291760 + 2291740 2291780 41 AACCGAATTGGCATGATTGGCTGGAACTTTGGACAGGTAAA AACCGAATTGGCATGATTGGCTTGAACTTTGGACAGGTAAA < 41bp 0.757663015417317 0.415178706355393 0.6096357 0.26848638 prediction 0.515326030834633 Functional Loss - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2291760 chr20:2291762 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_62900 0 0 0 0 1 TGM3 chr20:2291775 5'GT 2291775 Upstream 14bp
chr11 73915489 73915489 1 + C T COAD 73915487 + 73915467 73915507 41 GCCCTTTCTTGGGCTGTGTTCACGGTAAGTAGGTTGTTGAT GCCCTTTCTTGGGCTGTGTTCATGGTAAGTAGGTTGTTGAT < 41bp 0.757657658229988 0.486834182107783 0.8977998 0.8742157 prediction 0.515315316459976 Functional Loss - PPME1 ENSG00000214517 CDS Human protein_coding chr11:73915487 chr11:73915489 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_62903 0 0 1 0 1 PPME1 chr11:73915490 5'GT 73915490 Upstream 2bp
chr16 85689989 85689989 1 + G T LUAD 85689986 + 85689966 85690006 41 AGCTAAGGCGGGAGAGGGAGCGCGAGCGCGAGCGCGAGCGT AGCTAAGGCGGGAGAGGGAGCGCTAGCGCGAGCGCGAGCGT < 41bp 0.911937910750498 0.654292928929925 0.7214506 0.5464867 prediction 0.515289963641147 Functional Loss - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85689986 chr16:85689989 stopgain 0.013 1 24 hm5C_associated_SNPs_62906 0 0 1 0 1 GSE1 chr16:85689949 3'AG 85689949 Downstream 41bp
chr12 69050940 69050940 1 + C T LUSC 69050938 + 69050918 69050958 41 CTCCAGTGCCTGGGAAGGCTCGCAAAAAGTCATCATGTCAG CTCCAGTGCCTGGGAAGGCTCGTAAAAAGTCATCATGTCAG < 41bp 0.757634695555696 0.47599098342154 0.058108717 0.056342244 prediction 0.515269391111392 Functional Loss - RAP1B ENSG00000127314 CDS Human protein_coding chr12:69050938 chr12:69050940 synonymous SNV . 0 23 hm5C_associated_SNPs_62908 0 0 0 0 2 RAP1B chr12:69050881 3'AG 69050881 Downstream 60bp
chr12 69050940 69050940 1 + C T LUSC 69050938 + 69050918 69050958 41 CTCCAGTGCCTGGGAAGGCTCGCAAAAAGTCATCATGTCAG CTCCAGTGCCTGGGAAGGCTCGTAAAAAGTCATCATGTCAG < 41bp 0.757634695555696 0.47599098342154 0.058108717 0.056342244 prediction 0.515269391111392 Functional Loss - RAP1B ENSG00000127314 CDS Human protein_coding chr12:69050938 chr12:69050940 synonymous SNV . 0 23 hm5C_associated_SNPs_62908 0 0 0 0 2 RAP1B chr12:69050997 5'GT 69050997 Upstream 58bp
chr5 75893301 75893301 1 + G C LUAD 75893300 + 75893280 75893320 41 CCATATCAATGCTGTCATTCCGGAAGGTGACCCCGAGAATA CCATATCAATGCTGTCATTCCCGAAGGTGACCCCGAGAATA < 41bp 0.757626154261366 0.471213377033288 0.5253048 0.6218574 prediction 0.515252308522733 Functional Loss - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75893300 chr5:75893301 synonymous SNV . 0 22 hm5C_associated_SNPs_62909 0 0 1 0 1 IQGAP2 chr5:75893264 3'AG 75893264 Downstream 38bp
chr5 75893302 75893302 1 + G T LUAD 75893300 + 75893280 75893320 41 CCATATCAATGCTGTCATTCCGGAAGGTGACCCCGAGAATA CCATATCAATGCTGTCATTCCGTAAGGTGACCCCGAGAATA < 41bp 0.757626154261366 0.446560552483144 0.5253048 0.124418944 prediction 0.515252308522733 Functional Loss - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75893300 chr5:75893302 stopgain 0.992 0 23 hm5C_associated_SNPs_62910 0 0 1 0 1 IQGAP2 chr5:75893264 3'AG 75893264 Downstream 39bp
chr17 33475289 33475289 1 + G T LUSC 33475287 + 33475267 33475307 41 TCTCCTGTCCCAGCAGATGGCAGAGGTGGAAGCGGTACAGC TCTCCTGTCCCAGCAGATGGCATAGGTGGAAGCGGTACAGC < 41bp 0.757624600479848 0.400649792964698 0.8895453 0.5968883 prediction 0.515249200959697 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33475287 chr17:33475289 stopgain 0.939 1 23 hm5C_associated_SNPs_62911 0 0 0 0 1 UNC45B chr17:33475280 3'AG 33475280 Downstream 10bp
chr1 160104354 160104354 1 + G T UCEC 160104351 + 160104331 160104371 41 GGCATCATATCAGAGGGTAACGAGACTGTGGAGGACATTGC GGCATCATATCAGAGGGTAACGATACTGTGGAGGACATTGC < 41bp 0.757611744126661 0.367264384302217 0.9322963 0.6122927 prediction 0.515223488253322 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160104351 chr1:160104354 nonsynonymous SNV 0.983 3 24 hm5C_associated_SNPs_62912 0 0 0 0 2 ATP1A2 chr1:160104274 3'AG 160104274 Downstream 81bp
chr1 160104354 160104354 1 + G T UCEC 160104351 + 160104331 160104371 41 GGCATCATATCAGAGGGTAACGAGACTGTGGAGGACATTGC GGCATCATATCAGAGGGTAACGATACTGTGGAGGACATTGC < 41bp 0.757611744126661 0.367264384302217 0.9322963 0.6122927 prediction 0.515223488253322 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160104351 chr1:160104354 nonsynonymous SNV 0.983 3 24 hm5C_associated_SNPs_62912 0 0 0 0 2 ATP1A2 chr1:160104410 5'GT 160104410 Upstream 57bp
chr1 112018687 112018687 1 + G T OV 112018685 + 112018665 112018705 41 CTCCACATGTAAACCCGACACTGGTGAGTTTACGACAGGAA CTCCACATGTAAACCCGACACTTGTGAGTTTACGACAGGAA < 41bp 0.757608802307714 0.430624182657481 0.122306526 0.07698044 prediction 0.515217604615427 Functional Loss - C1orf162 ENSG00000143110 CDS Human protein_coding chr1:112018685 chr1:112018687 stopgain 0.063 0 23 hm5C_associated_SNPs_62913 0 0 1 0 2 C1orf162 chr1:112018640 3'AG 112018640 Downstream 48bp
chr1 112018687 112018687 1 + G T OV 112018685 + 112018665 112018705 41 CTCCACATGTAAACCCGACACTGGTGAGTTTACGACAGGAA CTCCACATGTAAACCCGACACTTGTGAGTTTACGACAGGAA < 41bp 0.757608802307714 0.430624182657481 0.122306526 0.07698044 prediction 0.515217604615427 Functional Loss - C1orf162 ENSG00000143110 CDS Human protein_coding chr1:112018685 chr1:112018687 stopgain 0.063 0 23 hm5C_associated_SNPs_62913 0 0 1 0 2 C1orf162 chr1:112018687 5'GT 112018687 Upstream 1bp
chr5 68425367 68425367 1 + G T OV 68425365 + 68425345 68425385 41 ACATATGTCTGGCCTAAGTACTGGATTTCATGATGTTCTGG ACATATGTCTGGCCTAAGTACTTGATTTCATGATGTTCTGG < 41bp 0.757607222564535 0.463235961203098 0.18632841 0.07327545 prediction 0.515214445129069 Functional Loss - SLC30A5 ENSG00000145740 CDS Human protein_coding chr5:68425365 chr5:68425367 stopgain 1.000 1 23 hm5C_associated_SNPs_62914 0 0 1 0 1 SLC30A5 chr5:68425274 3'AG 68425274 Downstream 94bp
chr15 67649700 67649700 1 + C T BLCA 67649698 + 67649678 67649718 41 CACAGCCACTTTCACTATACCTCGGGAACCACCTCCATCTC CACAGCCACTTTCACTATACCTTGGGAACCACCTCCATCTC < 41bp 0.781732353843927 0.524127383083512 0.011816412 0.014636636 prediction 0.51520994152083 Functional Loss - IQCH ENSG00000103599 CDS Human protein_coding chr15:67649698 chr15:67649700 nonsynonymous SNV 0.019 2 23 hm5C_associated_SNPs_62915 0 0 0 0 2 IQCH chr15:67649683 3'AG 67649683 Downstream 18bp
chr15 67649700 67649700 1 + C T BLCA 67649698 + 67649678 67649718 41 CACAGCCACTTTCACTATACCTCGGGAACCACCTCCATCTC CACAGCCACTTTCACTATACCTTGGGAACCACCTCCATCTC < 41bp 0.781732353843927 0.524127383083512 0.011816412 0.014636636 prediction 0.51520994152083 Functional Loss - IQCH ENSG00000103599 CDS Human protein_coding chr15:67649698 chr15:67649700 nonsynonymous SNV 0.019 2 23 hm5C_associated_SNPs_62915 0 0 0 0 2 IQCH chr15:67649759 5'GT 67649759 Upstream 60bp
chr2 241514487 241514487 1 + G T GBM 241514484 + 241514464 241514504 41 CTGATGAACCTGTTCACCTACGAGAAGGGCTACTGCTTCGT CTGATGAACCTGTTCACCTACGATAAGGGCTACTGCTTCGT < 41bp 0.75758802029041 0.363799245431177 0.303743 0.13235077 prediction 0.51517604058082 Functional Loss - RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241514484 chr2:241514487 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_62919 0 0 1 0 2 RNPEPL1 chr2:241514447 3'AG 241514447 Downstream 41bp
chr2 241514487 241514487 1 + G T GBM 241514484 + 241514464 241514504 41 CTGATGAACCTGTTCACCTACGAGAAGGGCTACTGCTTCGT CTGATGAACCTGTTCACCTACGATAAGGGCTACTGCTTCGT < 41bp 0.75758802029041 0.363799245431177 0.303743 0.13235077 prediction 0.51517604058082 Functional Loss - RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241514484 chr2:241514487 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_62919 0 0 1 0 2 RNPEPL1 chr2:241514559 5'GT 241514559 Upstream 73bp
chr10 74658713 74658713 1 + C T UCEC 74658711 + 74658691 74658731 41 AACTGCTGTCTCTGGAACACCACGGTGGAAGTCAAGGCTTG AACTGCTGTCTCTGGAACACCATGGTGGAAGTCAAGGCTTG < 41bp 0.77290708478014 0.515325364564105 0.29773402 0.27918047 prediction 0.515163440432069 Functional Loss - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74658711 chr10:74658713 nonsynonymous SNV 0.863 3 23 hm5C_associated_SNPs_62920 0 0 0 0 1 OIT3 chr10:74658796 5'GT 74658796 Upstream 84bp
chr1 66834589 66834589 1 + G T LUSC 66834587 + 66834567 66834607 41 TCCAGCAGGGAGACAAAGAGCGGGAGAGGGGAATGGAAATT TCCAGCAGGGAGACAAAGAGCGTGAGAGGGGAATGGAAATT < 41bp 0.847085005543451 0.589504629634702 0.60000604 0.20794886 prediction 0.515160751817498 Functional Loss - PDE4B ENSG00000184588 CDS Human protein_coding chr1:66834587 chr1:66834589 synonymous SNV . 0 23 hm5C_associated_SNPs_62921 0 0 0 0 1 PDE4B chr1:66834652 5'GT 66834652 Upstream 64bp
chr15 51975299 51975299 1 + G T UCEC 51975296 + 51975276 51975316 41 ATTGCTGAAGCAGAAGAAGACAAGATTAAAAAAACATATCC ATTGCTGAAGCAGAAGAAGACAATATTAAAAAAACATATCC < 41bp 0.757580023523255 0.390769591290581 0.32510966 0.4011986 prediction 0.51516004704651 Functional Loss - SCG3 ENSG00000104112 CDS Human protein_coding chr15:51975296 chr15:51975299 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_62922 0 0 0 0 2 SCG3 chr15:51975276 3'AG 51975276 Downstream 24bp
chr15 51975299 51975299 1 + G T UCEC 51975296 + 51975276 51975316 41 ATTGCTGAAGCAGAAGAAGACAAGATTAAAAAAACATATCC ATTGCTGAAGCAGAAGAAGACAATATTAAAAAAACATATCC < 41bp 0.757580023523255 0.390769591290581 0.32510966 0.4011986 prediction 0.51516004704651 Functional Loss - SCG3 ENSG00000104112 CDS Human protein_coding chr15:51975296 chr15:51975299 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_62922 0 0 0 0 2 SCG3 chr15:51975321 5'GT 51975321 Upstream 23bp
chr11 27679836 27679836 1 + G T LUAD 27679834 + 27679814 27679854 41 CTTGACTACTGAGCATCACCCTGGACGTGTACAAGTCTGCG CTTGACTACTGAGCATCACCCTTGACGTGTACAAGTCTGCG < 41bp 0.787369491733411 0.529792423786295 0.23556489 0.052619815 prediction 0.515154135894231 Functional Loss - BDNF ENSG00000176697 CDS Human protein_coding chr11:27679834 chr11:27679836 synonymous SNV . 0 23 hm5C_associated_SNPs_62923 0 0 0 0 1 BDNF chr11:27679788 3'AG 27679788 Downstream 49bp
chr5 176793252 176793252 1 + A T LIHC 176793248 + 176793228 176793268 41 TCTCTCAGCATCCACAGCCTCCCCAGTGGTCCCAGCAGCCC TCTCTCAGCATCCACAGCCTCCCCTGTGGTCCCAGCAGCCC < 41bp 0.757572432914771 0.412868976866243 0.04343459 0.04663986 prediction 0.515144865829543 Functional Loss - RGS14 ENSG00000169220 CDS Human protein_coding chr5:176793248 chr5:176793252 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_62925 0 0 0 0 1 RGS14 chr5:176793178 3'AG 176793178 Downstream 75bp
chr5 176793250 176793250 1 + C T PAAD 176793248 + 176793228 176793268 41 TCTCTCAGCATCCACAGCCTCCCCAGTGGTCCCAGCAGCCC TCTCTCAGCATCCACAGCCTCCTCAGTGGTCCCAGCAGCCC < 41bp 0.757572432914771 0.492181853235142 0.04343459 0.043367207 prediction 0.515144865829543 Functional Loss - RGS14 ENSG00000169220 CDS Human protein_coding chr5:176793248 chr5:176793250 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_62926 0 0 0 0 1 RGS14 chr5:176793178 3'AG 176793178 Downstream 73bp
chr12 2224480 2224480 1 + G T LUAD 2224477 + 2224457 2224497 41 CCCTGAGCACATCCCCACCCCGGGGGCTGCCCTGTCGTGGC CCCTGAGCACATCCCCACCCCGGTGGCTGCCCTGTCGTGGC < 41bp 0.757565724618372 0.498122278218095 0.9028202 0.35857013 prediction 0.515131449236744 Functional Loss - CACNA1C ENSG00000151067 CDS Human protein_coding chr12:2224477 chr12:2224480 nonsynonymous SNV 0.697 4 24 hm5C_associated_SNPs_62930 0 0 0 0 1 CACNA1C chr12:2224390 3'AG 2224390 Downstream 91bp
chr19 6828129 6828129 1 + G T LUAD 6828126 + 6828106 6828146 41 ACAACGGGAGGTTCACCCTGCGGGACCTGCTGATGGTGCCT ACAACGGGAGGTTCACCCTGCGGTACCTGCTGATGGTGCCT < 41bp 0.757561280699304 0.354656570159035 0.5193001 0.1636509 prediction 0.515122561398608 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6828126 chr19:6828129 nonsynonymous SNV 0.449 4 24 hm5C_associated_SNPs_62931 0 0 0 0 2 VAV1 chr19:6828087 3'AG 6828087 Downstream 43bp
chr19 6828129 6828129 1 + G T LUAD 6828126 + 6828106 6828146 41 ACAACGGGAGGTTCACCCTGCGGGACCTGCTGATGGTGCCT ACAACGGGAGGTTCACCCTGCGGTACCTGCTGATGGTGCCT < 41bp 0.757561280699304 0.354656570159035 0.5193001 0.1636509 prediction 0.515122561398608 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6828126 chr19:6828129 nonsynonymous SNV 0.449 4 24 hm5C_associated_SNPs_62931 0 0 0 0 2 VAV1 chr19:6828182 5'GT 6828182 Upstream 54bp
chr5 149927875 149927875 1 + C T SKCM 149927873 + 149927853 149927893 41 CATCCTCGAAGCTGCGTGCCCTCCAGAACCGCTGCCTGGTC CATCCTCGAAGCTGCGTGCCCTTCAGAACCGCTGCCTGGTC < 41bp 0.818023346859245 0.560478092620673 0.94872665 0.24629894 prediction 0.515090508477144 Functional Loss - NDST1 ENSG00000070614 CDS Human protein_coding chr5:149927873 chr5:149927875 synonymous SNV . 0 23 hm5C_associated_SNPs_62933 0 0 1 0 2 NDST1 chr5:149927780 3'AG 149927780 Downstream 96bp
chr5 149927875 149927875 1 + C T SKCM 149927873 + 149927853 149927893 41 CATCCTCGAAGCTGCGTGCCCTCCAGAACCGCTGCCTGGTC CATCCTCGAAGCTGCGTGCCCTTCAGAACCGCTGCCTGGTC < 41bp 0.818023346859245 0.560478092620673 0.94872665 0.24629894 prediction 0.515090508477144 Functional Loss - NDST1 ENSG00000070614 CDS Human protein_coding chr5:149927873 chr5:149927875 synonymous SNV . 0 23 hm5C_associated_SNPs_62933 0 0 1 0 2 NDST1 chr5:149927950 5'GT 149927950 Upstream 76bp
chr1 193104711 193104711 1 + C T UCEC 193104709 + 193104689 193104729 41 TTTAGCAGAAGCAAAGAAACCACGAATTGAGGTAAAGAAAC TTTAGCAGAAGCAAAGAAACCATGAATTGAGGTAAAGAAAC < 41bp 0.790331135354109 0.532793205254977 0.04715365 0.047450304 prediction 0.515075860198264 Functional Loss - CDC73 ENSG00000134371 CDS Human protein_coding chr1:193104709 chr1:193104711 stopgain 0.988 1 23 hm5C_associated_SNPs_62935 0 0 1 0 2 CDC73 chr1:193104667 3'AG 193104667 Downstream 45bp
chr1 193104711 193104711 1 + C T UCEC 193104709 + 193104689 193104729 41 TTTAGCAGAAGCAAAGAAACCACGAATTGAGGTAAAGAAAC TTTAGCAGAAGCAAAGAAACCATGAATTGAGGTAAAGAAAC < 41bp 0.790331135354109 0.532793205254977 0.04715365 0.047450304 prediction 0.515075860198264 Functional Loss - CDC73 ENSG00000134371 CDS Human protein_coding chr1:193104709 chr1:193104711 stopgain 0.988 1 23 hm5C_associated_SNPs_62935 0 0 1 0 2 CDC73 chr1:193104719 5'GT 193104719 Upstream 9bp
chr2 216182901 216182901 1 + A C UCEC 216182897 + 216182877 216182917 41 CAGAGATGTCTCTGAGTTGACGGGATTTCCTGAAATGTTGG CAGAGATGTCTCTGAGTTGACGGGCTTTCCTGAAATGTTGG < 41bp 0.777072695333045 0.519542274123047 0.5235159 0.57427114 prediction 0.515060842419994 Functional Loss - ATIC ENSG00000138363 CDS Human protein_coding chr2:216182897 chr2:216182901 synonymous SNV . 0 25 hm5C_associated_SNPs_62937 0 0 1 0 2 ATIC chr2:216182880 3'AG 216182880 Downstream 22bp
chr2 216182901 216182901 1 + A C UCEC 216182897 + 216182877 216182917 41 CAGAGATGTCTCTGAGTTGACGGGATTTCCTGAAATGTTGG CAGAGATGTCTCTGAGTTGACGGGCTTTCCTGAAATGTTGG < 41bp 0.777072695333045 0.519542274123047 0.5235159 0.57427114 prediction 0.515060842419994 Functional Loss - ATIC ENSG00000138363 CDS Human protein_coding chr2:216182897 chr2:216182901 synonymous SNV . 0 25 hm5C_associated_SNPs_62937 0 0 1 0 2 ATIC chr2:216182956 5'GT 216182956 Upstream 56bp
chr15 39880889 39880889 1 + A T UCEC 39880885 + 39880865 39880905 41 AAAACCAGATCTGCAACAAGCAGGACTGTCCAATTGGTGAG AAAACCAGATCTGCAACAAGCAGGTCTGTCCAATTGGTGAG < 41bp 0.85960157059149 0.602075672003358 0.87506294 0.7836884 prediction 0.515051797176263 Functional Loss - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39880885 chr15:39880889 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_62939 0 0 0 0 1 THBS1 chr15:39880900 5'GT 39880900 Upstream 12bp
chr20 34571931 34571931 1 + G T UCEC 34571928 + 34571908 34571948 41 GGTCGCAGGCGTGTGATCATCAAGAAGGGGCAGAAGGGCAA GGTCGCAGGCGTGTGATCATCAATAAGGGGCAGAAGGGCAA < 41bp 0.903108118935286 0.645582323455391 0.73955464 0.313622 prediction 0.515051590959789 Functional Loss - CNBD2 ENSG00000149646 CDS Human protein_coding chr20:34571928 chr20:34571931 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_62940 0 0 0 0 1 CNBD2 chr20:34571904 3'AG 34571904 Downstream 28bp
chr9 95768382 95768382 1 + A T rs569587664 95768378 + 95768358 95768398 41 AAGATGTACGGCGAGTATGTCAAGAACTTTGACCGAGCCGT AAGATGTACGGCGAGTATGTCAAGTACTTTGACCGAGCCGT < 41bp 0.757513684972969 0.438360913111292 0.874524 0.86888003 prediction 0.515027369945939 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95768378 chr9:95768382 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_62944 0 0 0 0 2 FGD3 chr9:95768306 3'AG 95768306 Downstream 77bp
chr9 95768382 95768382 1 + A T rs569587664 95768378 + 95768358 95768398 41 AAGATGTACGGCGAGTATGTCAAGAACTTTGACCGAGCCGT AAGATGTACGGCGAGTATGTCAAGTACTTTGACCGAGCCGT < 41bp 0.757513684972969 0.438360913111292 0.874524 0.86888003 prediction 0.515027369945939 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95768378 chr9:95768382 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_62944 0 0 0 0 2 FGD3 chr9:95768462 5'GT 95768462 Upstream 81bp
chr16 20486707 20486707 1 + G T UCEC 20486704 + 20486684 20486724 41 ACACTCTCCAGTTATCCAATCAAGAGTATGATGGGTGCCCC ACACTCTCCAGTTATCCAATCAATAGTATGATGGGTGCCCC < 41bp 0.757507670811911 0.370122193459057 0.54387134 0.12571251 prediction 0.515015341623822 Functional Loss - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20486704 chr16:20486707 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_62945 0 0 0 0 1 ACSM2A chr16:20486684 3'AG 20486684 Downstream 24bp
chrX 153171783 153171783 1 + G T LUAD 153171780 + 153171760 153171800 41 CCAAGACTGTGAGGATGACGCTAGTGATTGTGGTCGTCTAT CCAAGACTGTGAGGATGACGCTATTGATTGTGGTCGTCTAT < 41bp 0.75749561347609 0.36136235476826 0.02120319 0.010564297 prediction 0.514991226952179 Functional Loss - AVPR2 ENSG00000126895;ENSG00000126895 exonic;splicing Human protein_coding chrX:153171780 chrX:153171783 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_62946 0 0 0 0 1 AVPR2 chrX:153171870 5'GT 153171870 Upstream 88bp
chr4 25393993 25393993 1 + G T PRAD 25393991 + 25393971 25394011 41 TCTGTTGTACTCTTTCTTACCTGAAGTAACTCGGATGGCCA TCTGTTGTACTCTTTCTTACCTTAAGTAACTCGGATGGCCA < 41bp 0.757494302366959 0.443297154350092 0.30172712 0.14006528 prediction 0.514988604733918 Functional Loss - ANAPC4 ENSG00000053900 CDS Human protein_coding chr4:25393991 chr4:25393993 stopgain 1.000 1 23 hm5C_associated_SNPs_62948 0 0 1 0 2 ANAPC4 chr4:25393960 3'AG 25393960 Downstream 34bp
chr4 25393993 25393993 1 + G T PRAD 25393991 + 25393971 25394011 41 TCTGTTGTACTCTTTCTTACCTGAAGTAACTCGGATGGCCA TCTGTTGTACTCTTTCTTACCTTAAGTAACTCGGATGGCCA < 41bp 0.757494302366959 0.443297154350092 0.30172712 0.14006528 prediction 0.514988604733918 Functional Loss - ANAPC4 ENSG00000053900 CDS Human protein_coding chr4:25393991 chr4:25393993 stopgain 1.000 1 23 hm5C_associated_SNPs_62948 0 0 1 0 2 ANAPC4 chr4:25394043 5'GT 25394043 Upstream 51bp
chr19 7712288 7712288 1 + G T LUAD 7712286 + 7712266 7712306 41 ACAAGGCTGGCATAGAAGCCCGGGCGGGCCCCCGGCTCATC ACAAGGCTGGCATAGAAGCCCGTGCGGGCCCCCGGCTCATC < 41bp 0.84622389640595 0.58873303150966 0.83518183 0.36150962 prediction 0.51498172979258 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7712286 chr19:7712288 synonymous SNV . 0 23 hm5C_associated_SNPs_62949 0 0 1 0 1 STXBP2 chr19:7712240 3'AG 7712240 Downstream 49bp
chr17 691296 691296 1 + C T SKCM 691294 + 691274 691314 41 TATTATTGATTTGTGACAATCTCCGTGACCCTGGGAACCTG TATTATTGATTTGTGACAATCTTCGTGACCCTGGGAACCTG < 41bp 0.757490232822386 0.467145809937415 0.07785985 0.028594792 prediction 0.514980465644772 Functional Loss - MRM3 ENSG00000171861 CDS Human protein_coding chr17:691294 chr17:691296 synonymous SNV . 0 23 hm5C_associated_SNPs_62950 0 0 1 0 2 MRM3 chr17:691205 3'AG 691205 Downstream 92bp
chr17 691296 691296 1 + C T SKCM 691294 + 691274 691314 41 TATTATTGATTTGTGACAATCTCCGTGACCCTGGGAACCTG TATTATTGATTTGTGACAATCTTCGTGACCCTGGGAACCTG < 41bp 0.757490232822386 0.467145809937415 0.07785985 0.028594792 prediction 0.514980465644772 Functional Loss - MRM3 ENSG00000171861 CDS Human protein_coding chr17:691294 chr17:691296 synonymous SNV . 0 23 hm5C_associated_SNPs_62950 0 0 1 0 2 MRM3 chr17:691372 5'GT 691372 Upstream 77bp
chr22 30403266 30403266 1 + C T UCEC 30403264 + 30403244 30403284 41 GCTGTCAACTAGGAACACTTCTCGAGACTTTCCCAATGGGG GCTGTCAACTAGGAACACTTCTTGAGACTTTCCCAATGGGG < 41bp 0.812316248936245 0.554827579374446 0.37453693 0.07434508 prediction 0.514977339123598 Functional Loss - MTMR3 ENSG00000100330 CDS Human protein_coding chr22:30403264 chr22:30403266 stopgain 0.998 1 23 hm5C_associated_SNPs_62951 0 0 1 0 1 MTMR3 chr22:30403308 5'GT 30403308 Upstream 43bp
chr5 55195921 55195921 1 + C T HNSC 55195919 + 55195899 55195939 41 TTATAATTCTCTTGGGAAGTCTCCAGTGGCCACCCTGAGGA TTATAATTCTCTTGGGAAGTCTTCAGTGGCCACCCTGAGGA < 41bp 0.834355434911639 0.57686905651374 0.96098024 0.76046443 prediction 0.514972756795798 Functional Loss - IL31RA ENSG00000164509 CDS Human protein_coding chr5:55195919 chr5:55195921 nonsynonymous SNV 0.058 0 23 hm5C_associated_SNPs_62952 0 0 0 0 1 IL31RA chr5:55195960 5'GT 55195960 Upstream 40bp
chr17 40940389 40940389 1 + C T SKCM 40940387 + 40940367 40940407 41 GGAGACCCCCAGGGAGGAATCTCCGGCGCAGACCCCGATCC GGAGACCCCCAGGGAGGAATCTTCGGCGCAGACCCCGATCC < 41bp 0.805583053992311 0.548100050939138 0.8944633 0.84400856 prediction 0.514966006106346 Functional Loss - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40940387 chr17:40940389 synonymous SNV . 0 23 hm5C_associated_SNPs_62953 0 0 1 0 1 WNK4 chr17:40940308 3'AG 40940308 Downstream 82bp
chr3 133098661 133098661 1 + G C rs149345637 133098657 + 133098637 133098677 41 GCCATCCAGGAACCATCTCCCAGGGAATCTCTTCAGGTCCT GCCATCCAGGAACCATCTCCCAGGCAATCTCTTCAGGTCCT < 41bp 0.757471973864449 0.47537430700832 0.9179582 0.7080738 prediction 0.514943947728898 Functional Loss - TMEM108 ENSG00000144868 CDS Human protein_coding chr3:133098657 chr3:133098661 nonsynonymous SNV 0.992 3 25 hm5C_associated_SNPs_62956 0 0 0 0 1 TMEM108 chr3:133098596 3'AG 133098596 Downstream 66bp
chrX 153524338 153524338 1 + G T LUAD 153524335 + 153524315 153524355 41 TCCATCAGGGCCACATGCTCCACGAGCTCCGGGTAAGTTCT TCCATCAGGGCCACATGCTCCACTAGCTCCGGGTAAGTTCT < 41bp 0.75746585927505 0.379816548823873 0.20413527 0.040834755 prediction 0.514931718550099 Functional Loss - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153524335 chrX:153524338 synonymous SNV . 0 24 hm5C_associated_SNPs_62958 0 0 0 0 1 TKTL1 chrX:153524346 5'GT 153524346 Upstream 9bp
chr16 72058091 72058091 1 + G C LIHC 72058090 + 72058070 72058110 41 ATGCCATTGGAGCAGATCATCGGAGGTGAGGACAGCGTCTG ATGCCATTGGAGCAGATCATCCGAGGTGAGGACAGCGTCTG < 41bp 0.847002465461205 0.589537664022075 0.93274283 0.8991368 prediction 0.514929602878261 Functional Loss - DHODH ENSG00000102967 CDS Human protein_coding chr16:72058090 chr16:72058091 nonsynonymous SNV 0.991 3 22 hm5C_associated_SNPs_62960 0 0 0 0 1 DHODH chr16:72058044 3'AG 72058044 Downstream 48bp
chr16 21698949 21698949 1 + C T rs16972658 21698947 + 21698927 21698967 41 AGCGGCTCCCTCGGGACCTGCGCGAGGATGCCTTTAAGAAC AGCGGCTCCCTCGGGACCTGCGTGAGGATGCCTTTAAGAAC < 41bp 0.757451460086331 0.492103153075788 0.33182216 0.3787294 prediction 0.514902920172662 Functional Loss - OTOA ENSG00000155719 CDS Human protein_coding chr16:21698947 chr16:21698949 synonymous SNV . 0 23 hm5C_associated_SNPs_62962 1 0 0 0 1 OTOA chr16:21698969 5'GT 21698969 Upstream 21bp
chr7 8110646 8110646 1 + G T COAD 8110644 + 8110624 8110664 41 ACACTCAGACTCCTTCTGTCCAGGAGCGCAGCAGTAGCTGC ACACTCAGACTCCTTCTGTCCATGAGCGCAGCAGTAGCTGC < 41bp 0.887799684807806 0.630354621573578 0.5152492 0.24989232 prediction 0.514890126468455 Functional Loss - GLCCI1 ENSG00000106415 CDS Human protein_coding chr7:8110644 chr7:8110646 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_62964 0 0 0 0 1 GLCCI1 chr7:8110551 3'AG 8110551 Downstream 96bp
chr15 76463404 76463404 1 + G T UCEC 76463402 + 76463382 76463422 41 TCCACTGTGGCCAATGGACCCAGGAGCCCCTGGGACGCCAT TCCACTGTGGCCAATGGACCCATGAGCCCCTGGGACGCCAT < 41bp 0.890301890503526 0.632862792298426 0.91163146 0.16083291 prediction 0.5148781964102 Functional Loss - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76463402 chr15:76463404 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_62965 0 0 0 0 2 TMEM266 chr15:76463334 3'AG 76463334 Downstream 71bp
chr15 76463404 76463404 1 + G T UCEC 76463402 + 76463382 76463422 41 TCCACTGTGGCCAATGGACCCAGGAGCCCCTGGGACGCCAT TCCACTGTGGCCAATGGACCCATGAGCCCCTGGGACGCCAT < 41bp 0.890301890503526 0.632862792298426 0.91163146 0.16083291 prediction 0.5148781964102 Functional Loss - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76463402 chr15:76463404 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_62965 0 0 0 0 2 TMEM266 chr15:76463472 5'GT 76463472 Upstream 69bp
chr2 85770091 85770091 1 + A T KIRP 85770087 + 85770067 85770107 41 TTTTCCATTATGGTACCTCTCAGAAGAGTGAGAGAGAGCTA TTTTCCATTATGGTACCTCTCAGATGAGTGAGAGAGAGCTA < 41bp 0.845122428130706 0.587685037936952 0.82940185 0.8194748 prediction 0.514874780387506 Functional Loss - MAT2A ENSG00000168906 CDS Human protein_coding chr2:85770087 chr2:85770091 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_62966 0 0 1 0 2 MAT2A chr2:85770024 3'AG 85770024 Downstream 68bp
chr2 85770091 85770091 1 + A T KIRP 85770087 + 85770067 85770107 41 TTTTCCATTATGGTACCTCTCAGAAGAGTGAGAGAGAGCTA TTTTCCATTATGGTACCTCTCAGATGAGTGAGAGAGAGCTA < 41bp 0.845122428130706 0.587685037936952 0.82940185 0.8194748 prediction 0.514874780387506 Functional Loss - MAT2A ENSG00000168906 CDS Human protein_coding chr2:85770087 chr2:85770091 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_62966 0 0 1 0 2 MAT2A chr2:85770157 5'GT 85770157 Upstream 67bp
chr18 12407992 12407992 1 + G C rs116806842 12407991 + 12407971 12408011 41 GGCAATGAAGATCTGGAGCTCGGAGCACGTGTTTGGGTGAG GGCAATGAAGATCTGGAGCTCCGAGCACGTGTTTGGGTGAG < 41bp 0.836201997958132 0.578777980770792 0.890235 0.68052244 prediction 0.514848034374681 Functional Loss - PRELID3A ENSG00000141391 CDS Human protein_coding chr18:12407991 chr18:12407992 synonymous SNV . 0 22 hm5C_associated_SNPs_62969 0 0 1 0 1 PRELID3A chr18:12408006 5'GT 12408006 Upstream 15bp
chr17 37667858 37667858 1 + C T STAD 37667856 + 37667836 37667876 41 GCTAGGAGAGGAACGTTACACACCAGCCATAGATGTTTGGA GCTAGGAGAGGAACGTTACACATCAGCCATAGATGTTTGGA < 41bp 0.757416606405918 0.46440176313108 0.15491071 0.14440215 prediction 0.514833212811835 Functional Loss - CDK12 ENSG00000167258 CDS Human protein_coding chr17:37667856 chr17:37667858 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_62972 0 0 1 0 2 CDK12 chr17:37667782 3'AG 37667782 Downstream 77bp
chr17 37667858 37667858 1 + C T STAD 37667856 + 37667836 37667876 41 GCTAGGAGAGGAACGTTACACACCAGCCATAGATGTTTGGA GCTAGGAGAGGAACGTTACACATCAGCCATAGATGTTTGGA < 41bp 0.757416606405918 0.46440176313108 0.15491071 0.14440215 prediction 0.514833212811835 Functional Loss - CDK12 ENSG00000167258 CDS Human protein_coding chr17:37667856 chr17:37667858 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_62972 0 0 1 0 2 CDK12 chr17:37667883 5'GT 37667883 Upstream 26bp
chr14 24845725 24845725 1 + G T LUAD 24845722 + 24845702 24845742 41 GCCCCCACCATCCTACAGACCGGGCCTGCGGATGTTCCCTG GCCCCCACCATCCTACAGACCGGTCCTGCGGATGTTCCCTG < 41bp 0.757415001201145 0.421593419597322 0.5818865 0.10446191 prediction 0.51483000240229 Functional Loss - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24845722 chr14:24845725 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_62973 0 0 0 0 1 NFATC4 chr14:24845760 5'GT 24845760 Upstream 36bp
chr8 20068769 20068769 1 + G T UCEC 20068767 + 20068747 20068787 41 TCGGCCATCGATGGGATGAACAGTATTGCTAGGGGGCAGAA TCGGCCATCGATGGGATGAACATTATTGCTAGGGGGCAGAA < 41bp 0.757413424525914 0.413834093290143 0.25397265 0.20939296 prediction 0.514826849051828 Functional Loss - ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20068767 chr8:20068769 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_62974 0 0 1 0 2 ATP6V1B2 chr8:20068688 3'AG 20068688 Downstream 82bp
chr8 20068769 20068769 1 + G T UCEC 20068767 + 20068747 20068787 41 TCGGCCATCGATGGGATGAACAGTATTGCTAGGGGGCAGAA TCGGCCATCGATGGGATGAACATTATTGCTAGGGGGCAGAA < 41bp 0.757413424525914 0.413834093290143 0.25397265 0.20939296 prediction 0.514826849051828 Functional Loss - ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20068767 chr8:20068769 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_62974 0 0 1 0 2 ATP6V1B2 chr8:20068827 5'GT 20068827 Upstream 59bp
chr3 113344967 113344967 1 + C T GBM 113344965 + 113344945 113344985 41 CCAGGGAACTCCGGCCGAATCCCGGGAGAAGAACCGCGAGT CCAGGGAACTCCGGCCGAATCCTGGGAGAAGAACCGCGAGT < 41bp 0.757407517997149 0.491793719265446 0.8413553 0.88162905 prediction 0.514815035994299 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113344965 chr3:113344967 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_62976 0 0 0 0 2 SIDT1 chr3:113344949 3'AG 113344949 Downstream 19bp
chr3 113344967 113344967 1 + C T GBM 113344965 + 113344945 113344985 41 CCAGGGAACTCCGGCCGAATCCCGGGAGAAGAACCGCGAGT CCAGGGAACTCCGGCCGAATCCTGGGAGAAGAACCGCGAGT < 41bp 0.757407517997149 0.491793719265446 0.8413553 0.88162905 prediction 0.514815035994299 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113344965 chr3:113344967 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_62976 0 0 0 0 2 SIDT1 chr3:113345062 5'GT 113345062 Upstream 96bp
chr3 50131270 50131270 1 + A T SKCM 50131266 + 50131246 50131286 41 GACGAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCC GACGAGAGGGAGAGCAAGACCATCTTGCTGCGCGGCCTTCC < 41bp 0.757400123587229 0.426772983866494 0.0747557 0.14918545 prediction 0.514800247174458 Functional Loss - RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131266 chr3:50131270 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_62979 0 0 1 0 2 RBM5 chr3:50131254 3'AG 50131254 Downstream 17bp
chr3 50131270 50131270 1 + A T SKCM 50131266 + 50131246 50131286 41 GACGAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCC GACGAGAGGGAGAGCAAGACCATCTTGCTGCGCGGCCTTCC < 41bp 0.757400123587229 0.426772983866494 0.0747557 0.14918545 prediction 0.514800247174458 Functional Loss - RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131266 chr3:50131270 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_62979 0 0 1 0 2 RBM5 chr3:50131308 5'GT 50131308 Upstream 39bp
chr12 107048077 107048077 1 + A C UCEC 107048073 + 107048053 107048093 41 GTGCCCTCTATATGCATTACCTGGATTTCTGCGAGAAGAAT GTGCCCTCTATATGCATTACCTGGCTTTCTGCGAGAAGAAT < 41bp 0.757392854492582 0.346556061449706 0.18755654 0.07802653 prediction 0.514785708985164 Functional Loss - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107048073 chr12:107048077 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_62980 0 0 0 0 2 RFX4 chr12:107048006 3'AG 107048006 Downstream 72bp
chr12 107048077 107048077 1 + A C UCEC 107048073 + 107048053 107048093 41 GTGCCCTCTATATGCATTACCTGGATTTCTGCGAGAAGAAT GTGCCCTCTATATGCATTACCTGGCTTTCTGCGAGAAGAAT < 41bp 0.757392854492582 0.346556061449706 0.18755654 0.07802653 prediction 0.514785708985164 Functional Loss - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107048073 chr12:107048077 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_62980 0 0 0 0 2 RFX4 chr12:107048129 5'GT 107048129 Upstream 53bp
chr1 32688180 32688180 1 + G C BLCA 32688176 + 32688156 32688196 41 GGGCCATGAGCGGTCCATTACGCAGATTAAGTATAACCGCG GGGCCATGAGCGGTCCATTACGCACATTAAGTATAACCGCG < 41bp 0.816137525846763 0.558752840618521 0.20712525 0.026316196 prediction 0.514769370456485 Functional Loss - EIF3I ENSG00000084623 CDS Human protein_coding chr1:32688176 chr1:32688180 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_62983 0 0 1 0 2 EIF3I chr1:32688139 3'AG 32688139 Downstream 42bp
chr1 32688180 32688180 1 + G C BLCA 32688176 + 32688156 32688196 41 GGGCCATGAGCGGTCCATTACGCAGATTAAGTATAACCGCG GGGCCATGAGCGGTCCATTACGCACATTAAGTATAACCGCG < 41bp 0.816137525846763 0.558752840618521 0.20712525 0.026316196 prediction 0.514769370456485 Functional Loss - EIF3I ENSG00000084623 CDS Human protein_coding chr1:32688176 chr1:32688180 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_62983 0 0 1 0 2 EIF3I chr1:32688231 5'GT 32688231 Upstream 52bp
chr13 31513847 31513847 1 + G T LUAD 31513844 + 31513824 31513864 41 CTTTTAGCAGATGACCCCAACTGGGATTCCTATGCTACCAC CTTTTAGCAGATGACCCCAACTGTGATTCCTATGCTACCAC < 41bp 0.757382917657279 0.370385486862177 0.32130715 0.17757398 prediction 0.514765835314557 Functional Loss - TEX26 ENSG00000175664 CDS Human protein_coding chr13:31513844 chr13:31513847 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_62985 0 0 0 0 2 TEX26 chr13:31513831 3'AG 31513831 Downstream 17bp
chr13 31513847 31513847 1 + G T LUAD 31513844 + 31513824 31513864 41 CTTTTAGCAGATGACCCCAACTGGGATTCCTATGCTACCAC CTTTTAGCAGATGACCCCAACTGTGATTCCTATGCTACCAC < 41bp 0.757382917657279 0.370385486862177 0.32130715 0.17757398 prediction 0.514765835314557 Functional Loss - TEX26 ENSG00000175664 CDS Human protein_coding chr13:31513844 chr13:31513847 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_62985 0 0 0 0 2 TEX26 chr13:31513915 5'GT 31513915 Upstream 69bp
chr13 31513846 31513846 1 + G T LUAD 31513844 + 31513824 31513864 41 CTTTTAGCAGATGACCCCAACTGGGATTCCTATGCTACCAC CTTTTAGCAGATGACCCCAACTTGGATTCCTATGCTACCAC < 41bp 0.757382917657279 0.424512976163584 0.32130715 0.113203675 prediction 0.514765835314557 Functional Loss - TEX26 ENSG00000175664 CDS Human protein_coding chr13:31513844 chr13:31513846 nonsynonymous SNV 0.948 4 23 hm5C_associated_SNPs_62986 0 0 0 0 2 TEX26 chr13:31513831 3'AG 31513831 Downstream 16bp
chr13 31513846 31513846 1 + G T LUAD 31513844 + 31513824 31513864 41 CTTTTAGCAGATGACCCCAACTGGGATTCCTATGCTACCAC CTTTTAGCAGATGACCCCAACTTGGATTCCTATGCTACCAC < 41bp 0.757382917657279 0.424512976163584 0.32130715 0.113203675 prediction 0.514765835314557 Functional Loss - TEX26 ENSG00000175664 CDS Human protein_coding chr13:31513844 chr13:31513846 nonsynonymous SNV 0.948 4 23 hm5C_associated_SNPs_62986 0 0 0 0 2 TEX26 chr13:31513915 5'GT 31513915 Upstream 70bp
chr19 55495058 55495058 1 + G C STAD 55495054 + 55495034 55495074 41 GGTAATAAAGGAGAATCTCCCGGAGAATGTCACTGCGTCTG GGTAATAAAGGAGAATCTCCCGGACAATGTCACTGCGTCTG < 41bp 0.757382714803957 0.471040932354461 0.9154381 0.86720735 prediction 0.514765429607914 Functional Loss - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55495054 chr19:55495058 nonsynonymous SNV 0.030 0 25 hm5C_associated_SNPs_62987 0 0 0 0 1 NLRP2 chr19:55495096 5'GT 55495096 Upstream 39bp
chr17 33504573 33504573 1 + G T ACC 33504571 + 33504551 33504591 41 ACACACAGAGGGATGGGCTTCAGAACTATGAGGCTCTCCTA ACACACAGAGGGATGGGCTTCATAACTATGAGGCTCTCCTA < 41bp 0.757379661966303 0.416855847086243 0.556559 0.13997737 prediction 0.514759323932606 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33504571 chr17:33504573 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_62988 0 0 0 0 2 UNC45B chr17:33504514 3'AG 33504514 Downstream 60bp
chr17 33504573 33504573 1 + G T ACC 33504571 + 33504551 33504591 41 ACACACAGAGGGATGGGCTTCAGAACTATGAGGCTCTCCTA ACACACAGAGGGATGGGCTTCATAACTATGAGGCTCTCCTA < 41bp 0.757379661966303 0.416855847086243 0.556559 0.13997737 prediction 0.514759323932606 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33504571 chr17:33504573 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_62988 0 0 0 0 2 UNC45B chr17:33504629 5'GT 33504629 Upstream 57bp
chr9 2645616 2645616 1 + G T UCEC 2645614 + 2645594 2645634 41 TTCACTAATCGAAGAGACATCAGGAAGATTGGCTTAGAGAG TTCACTAATCGAAGAGACATCATGAAGATTGGCTTAGAGAG < 41bp 0.757365469289591 0.44523181334139 0.8487419 0.083456516 prediction 0.514730938579183 Functional Loss - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2645614 chr9:2645616 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_62994 0 0 0 0 1 VLDLR chr9:2645574 3'AG 2645574 Downstream 43bp
chr5 54624617 54624617 1 + G T SARC 54624615 + 54624595 54624635 41 TCTAGTATCTGCACATACCTCAGCGGGAAAAACAGTATGCG TCTAGTATCTGCACATACCTCATCGGGAAAAACAGTATGCG < 41bp 0.75736383737614 0.423341649478803 0.32806832 0.063846916 prediction 0.514727674752279 Functional Loss - SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54624615 chr5:54624617 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_62996 0 0 1 0 2 SKIV2L2 chr5:54624527 3'AG 54624527 Downstream 91bp
chr5 54624617 54624617 1 + G T SARC 54624615 + 54624595 54624635 41 TCTAGTATCTGCACATACCTCAGCGGGAAAAACAGTATGCG TCTAGTATCTGCACATACCTCATCGGGAAAAACAGTATGCG < 41bp 0.75736383737614 0.423341649478803 0.32806832 0.063846916 prediction 0.514727674752279 Functional Loss - SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54624615 chr5:54624617 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_62996 0 0 1 0 2 SKIV2L2 chr5:54624639 5'GT 54624639 Upstream 23bp
chr6 25665243 25665243 1 + A C LUSC 25665239 + 25665219 25665259 41 CGCCGGGAAAACCCACTGGACAGCAGCGTGGAGTTTATGCA CGCCGGGAAAACCCACTGGACAGCCGCGTGGAGTTTATGCA < 41bp 0.757362485717175 0.333387225657153 0.2991999 0.25148696 prediction 0.51472497143435 Functional Loss - SCGN ENSG00000079689 CDS Human protein_coding chr6:25665239 chr6:25665243 nonsynonymous SNV 0.961 4 25 hm5C_associated_SNPs_62998 0 0 1 0 2 SCGN chr6:25665171 3'AG 25665171 Downstream 73bp
chr6 25665243 25665243 1 + A C LUSC 25665239 + 25665219 25665259 41 CGCCGGGAAAACCCACTGGACAGCAGCGTGGAGTTTATGCA CGCCGGGAAAACCCACTGGACAGCCGCGTGGAGTTTATGCA < 41bp 0.757362485717175 0.333387225657153 0.2991999 0.25148696 prediction 0.51472497143435 Functional Loss - SCGN ENSG00000079689 CDS Human protein_coding chr6:25665239 chr6:25665243 nonsynonymous SNV 0.961 4 25 hm5C_associated_SNPs_62998 0 0 1 0 2 SCGN chr6:25665260 5'GT 25665260 Upstream 18bp
chr11 70224237 70224237 1 + A C rs144543406 70224233 + 70224213 70224253 41 TGGGTCAGCAGAGACTCTCCCTGCAAACTTCCGGGTGACTT TGGGTCAGCAGAGACTCTCCCTGCCAACTTCCGGGTGACTT < 41bp 0.757361548008822 0.332786679466536 0.35993987 0.16568482 prediction 0.514723096017644 Functional Loss - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70224233 chr11:70224237 synonymous SNV . 0 25 hm5C_associated_SNPs_62999 0 0 1 0 1 PPFIA1 chr11:70224301 5'GT 70224301 Upstream 65bp
chr15 85343188 85343188 1 + C T UCEC 85343186 + 85343166 85343206 41 CCAGACGTCCAAAGTGAAACCTCCGGGTGGACATTCCCCTC CCAGACGTCCAAAGTGAAACCTTCGGGTGGACATTCCCCTC < 41bp 0.757357249627359 0.481704856763414 0.3673662 0.20235047 prediction 0.514714499254718 Functional Loss - ZNF592 ENSG00000166716 CDS Human protein_coding chr15:85343186 chr15:85343188 nonsynonymous SNV 0.651 0 23 hm5C_associated_SNPs_63001 0 0 1 0 1 ZNF592 chr15:85343208 5'GT 85343208 Upstream 21bp
chr16 30676988 30676988 1 + G T THYM 30676986 + 30676966 30677006 41 ACCCTGAGCTGCCACCACGACTGGGGCCGGTGCCGAGCGGG ACCCTGAGCTGCCACCACGACTTGGGCCGGTGCCGAGCGGG < 41bp 0.757348503457635 0.411419348477113 0.5238805 0.15426731 prediction 0.51469700691527 Functional Loss - FBRS ENSG00000156860 CDS Human protein_coding chr16:30676986 chr16:30676988 synonymous SNV . 0 23 hm5C_associated_SNPs_63003 0 0 1 0 2 FBRS chr16:30676959 3'AG 30676959 Downstream 30bp
chr16 30676988 30676988 1 + G T THYM 30676986 + 30676966 30677006 41 ACCCTGAGCTGCCACCACGACTGGGGCCGGTGCCGAGCGGG ACCCTGAGCTGCCACCACGACTTGGGCCGGTGCCGAGCGGG < 41bp 0.757348503457635 0.411419348477113 0.5238805 0.15426731 prediction 0.51469700691527 Functional Loss - FBRS ENSG00000156860 CDS Human protein_coding chr16:30676986 chr16:30676988 synonymous SNV . 0 23 hm5C_associated_SNPs_63003 0 0 1 0 2 FBRS chr16:30677027 5'GT 30677027 Upstream 40bp
chr11 76171063 76171063 1 + C T SKCM 76171061 + 76171041 76171081 41 CAGCATAGCAACGGTTAAGTCTCCAAGACCTGCCAGTCCTG CAGCATAGCAACGGTTAAGTCTTCAAGACCTGCCAGTCCTG < 41bp 0.806676847864256 0.54933004106985 0.97263813 0.16417593 prediction 0.514693613588811 Functional Loss - EMSY ENSG00000158636 CDS Human protein_coding chr11:76171061 chr11:76171063 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_63004 0 0 1 0 3 EMSY chr11:76170977 3'AG 76170977 Downstream 87bp
chr11 76171063 76171063 1 + C T SKCM 76171061 + 76171041 76171081 41 CAGCATAGCAACGGTTAAGTCTCCAAGACCTGCCAGTCCTG CAGCATAGCAACGGTTAAGTCTTCAAGACCTGCCAGTCCTG < 41bp 0.806676847864256 0.54933004106985 0.97263813 0.16417593 prediction 0.514693613588811 Functional Loss - EMSY ENSG00000158636 CDS Human protein_coding chr11:76171061 chr11:76171063 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_63004 0 0 1 0 3 EMSY chr11:76170980 3'AG 76170980 Downstream 84bp
chr11 76171063 76171063 1 + C T SKCM 76171061 + 76171041 76171081 41 CAGCATAGCAACGGTTAAGTCTCCAAGACCTGCCAGTCCTG CAGCATAGCAACGGTTAAGTCTTCAAGACCTGCCAGTCCTG < 41bp 0.806676847864256 0.54933004106985 0.97263813 0.16417593 prediction 0.514693613588811 Functional Loss - EMSY ENSG00000158636 CDS Human protein_coding chr11:76171061 chr11:76171063 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_63004 0 0 1 0 3 EMSY chr11:76171129 5'GT 76171129 Upstream 67bp
chr3 119422028 119422028 1 + G T UCEC 119422025 + 119422005 119422045 41 GTACCGGGAGAGGTCGCGGGCTGGGAGCCACATCTCCTCCA GTACCGGGAGAGGTCGCGGGCTGTGAGCCACATCTCCTCCA < 41bp 0.81108942540777 0.553742859307127 0.6814452 0.20257741 prediction 0.514693132201286 Functional Loss - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119422025 chr3:119422028 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_63005 0 0 0 0 2 MAATS1 chr3:119422069 5'GT 119422069 Upstream 42bp
chr3 119422028 119422028 1 + G T UCEC 119422025 + 119422005 119422045 41 GTACCGGGAGAGGTCGCGGGCTGGGAGCCACATCTCCTCCA GTACCGGGAGAGGTCGCGGGCTGTGAGCCACATCTCCTCCA < 41bp 0.81108942540777 0.553742859307127 0.6814452 0.20257741 prediction 0.514693132201286 Functional Loss - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119422025 chr3:119422028 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_63005 0 0 0 0 2 MAATS1 chr3:119422118 5'GT 119422118 Upstream 91bp
chr7 127343360 127343360 1 + G T PRAD 127343357 + 127343337 127343377 41 GCTGCCACAACCAGAACATTCTGGGTACCATCCTTCATCCA GCTGCCACAACCAGAACATTCTGTGTACCATCCTTCATCCA < 41bp 0.757341879670854 0.383958403321205 0.24926534 0.036097586 prediction 0.514683759341707 Functional Loss - SND1 ENSG00000197157 CDS Human protein_coding chr7:127343357 chr7:127343360 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_63006 0 0 1 0 1 SND1 chr7:127343377 5'GT 127343377 Upstream 18bp
chr19 12087895 12087895 1 + G T LUAD 12087892 + 12087872 12087912 41 ATGTTGCTGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTG ATGTTGCTGTGAACTTCACCCAGTAGGAGTGGGCTTTGCTG < 41bp 0.908287746293892 0.650948795482095 0.92218626 0.15571344 prediction 0.514677901623593 Functional Loss - ZNF763 ENSG00000197054;ENSG00000267179 CDS Human other chr19:12087892 chr19:12087895 stopgain 0.008 0 24 hm5C_associated_SNPs_63008 0 0 0 0 3 ZNF763 chr19:12087844 3'AG 12087844 Downstream 52bp
chr19 12087895 12087895 1 + G T LUAD 12087892 + 12087872 12087912 41 ATGTTGCTGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTG ATGTTGCTGTGAACTTCACCCAGTAGGAGTGGGCTTTGCTG < 41bp 0.908287746293892 0.650948795482095 0.92218626 0.15571344 prediction 0.514677901623593 Functional Loss - ZNF763 ENSG00000197054;ENSG00000267179 CDS Human other chr19:12087892 chr19:12087895 stopgain 0.008 0 24 hm5C_associated_SNPs_63008 0 0 0 0 3 ZNF763 chr19:12087853 3'AG 12087853 Downstream 43bp
chr19 12087895 12087895 1 + G T LUAD 12087892 + 12087872 12087912 41 ATGTTGCTGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTG ATGTTGCTGTGAACTTCACCCAGTAGGAGTGGGCTTTGCTG < 41bp 0.908287746293892 0.650948795482095 0.92218626 0.15571344 prediction 0.514677901623593 Functional Loss - ZNF763 ENSG00000197054;ENSG00000267179 CDS Human other chr19:12087892 chr19:12087895 stopgain 0.008 0 24 hm5C_associated_SNPs_63008 0 0 0 0 3 ZNF763 chr19:12087979 5'GT 12087979 Upstream 85bp
chr3 140401335 140401335 1 + G C BLCA 140401331 + 140401311 140401351 41 ACTGCCCTGCGCACTGGGAGCAGCGATACCCAGGTGGATGA ACTGCCCTGCGCACTGGGAGCAGCCATACCCAGGTGGATGA < 41bp 0.757331150653389 0.455973522655189 0.4130047 0.4918303 prediction 0.514662301306777 Functional Loss - TRIM42 ENSG00000155890 CDS Human protein_coding chr3:140401331 chr3:140401335 nonsynonymous SNV 0.319 1 25 hm5C_associated_SNPs_63009 0 0 0 0 1 TRIM42 chr3:140401304 3'AG 140401304 Downstream 32bp
chr2 238402143 238402143 1 + A T PRAD 238402139 + 238402119 238402159 41 ATGTCTTGGAAGTTGTTCAACGAGATTTTGACCTCCGAAGG ATGTCTTGGAAGTTGTTCAACGAGTTTTTGACCTCCGAAGG < 41bp 0.856273929106111 0.598956345648989 0.7692739 0.4064424 prediction 0.514635166914245 Functional Loss - MLPH ENSG00000115648 CDS Human protein_coding chr2:238402139 chr2:238402143 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_63013 0 0 0 0 1 MLPH chr2:238402046 3'AG 238402046 Downstream 98bp
chr9 135864569 135864569 1 + C T UCEC 135864567 + 135864547 135864587 41 GCTGTGAGCCTGGAGCAGCACACGCACGTCCACTCCCAGGT GCTGTGAGCCTGGAGCAGCACATGCACGTCCACTCCCAGGT < 41bp 0.757315199340581 0.499878032289596 0.23009878 0.30408558 prediction 0.514630398681162 Functional Loss - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135864567 chr9:135864569 nonsynonymous SNV 0.855 0 23 hm5C_associated_SNPs_63014 0 0 1 0 1 GFI1B chr9:135864585 5'GT 135864585 Upstream 17bp
chr3 50219808 50219808 1 + G T LUSC 50219805 + 50219785 50219825 41 GGAAAGCAGACAGCCATGCGCACGGATCAGTACAACTCCCG GGAAAGCAGACAGCCATGCGCACTGATCAGTACAACTCCCG < 41bp 0.75729809404522 0.355092795549275 0.1961267 0.04866478 prediction 0.51459618809044 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50219805 chr3:50219808 synonymous SNV . 0 24 hm5C_associated_SNPs_63015 0 0 0 0 2 SEMA3F chr3:50219717 3'AG 50219717 Downstream 92bp
chr3 50219808 50219808 1 + G T LUSC 50219805 + 50219785 50219825 41 GGAAAGCAGACAGCCATGCGCACGGATCAGTACAACTCCCG GGAAAGCAGACAGCCATGCGCACTGATCAGTACAACTCCCG < 41bp 0.75729809404522 0.355092795549275 0.1961267 0.04866478 prediction 0.51459618809044 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50219805 chr3:50219808 synonymous SNV . 0 24 hm5C_associated_SNPs_63015 0 0 0 0 2 SEMA3F chr3:50219836 5'GT 50219836 Upstream 29bp
chr19 36244125 36244125 1 + C T CESC 36244123 + 36244103 36244143 41 GCGTGAATGCTCTCCCAGCTCACCCCTGCCCCCGCTGCCTG GCGTGAATGCTCTCCCAGCTCATCCCTGCCCCCGCTGCCTG < 41bp 0.769097304412231 0.511799857324663 0.05083689 0.036685675 prediction 0.514594894175136 Functional Loss - LIN37 ENSG00000267796 CDS Human protein_coding chr19:36244123 chr19:36244125 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_63016 0 0 1 0 1 LIN37 chr19:36244154 5'GT 36244154 Upstream 30bp
chr1 26514993 26514993 1 + C T BLCA 26514991 + 26514971 26515011 41 GAGGCTGGGTCCCACTCAGCCTCGGTGAGTGGGGGGCTGCC GAGGCTGGGTCCCACTCAGCCTTGGTGAGTGGGGGGCTGCC < 41bp 0.757289395581516 0.490028983498482 0.14122683 0.11609754 prediction 0.514578791163032 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26514991 chr1:26514993 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_63018 0 0 0 0 2 CNKSR1 chr1:26514933 3'AG 26514933 Downstream 61bp
chr1 26514993 26514993 1 + C T BLCA 26514991 + 26514971 26515011 41 GAGGCTGGGTCCCACTCAGCCTCGGTGAGTGGGGGGCTGCC GAGGCTGGGTCCCACTCAGCCTTGGTGAGTGGGGGGCTGCC < 41bp 0.757289395581516 0.490028983498482 0.14122683 0.11609754 prediction 0.514578791163032 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26514991 chr1:26514993 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_63018 0 0 0 0 2 CNKSR1 chr1:26514994 5'GT 26514994 Upstream 2bp
chr20 3204021 3204021 1 + G C BLCA 3204017 + 3203997 3204037 41 ACTGTCACCCCTCAGGTACGCAGAGATGCCTAAGGCGGAGA ACTGTCACCCCTCAGGTACGCAGACATGCCTAAGGCGGAGA < 41bp 0.757284178059583 0.480744675751317 0.65066797 0.2829101 prediction 0.514568356119166 Functional Loss - ITPA ENSG00000125877 CDS Human protein_coding chr20:3204017 chr20:3204021 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_63020 0 0 1 0 1 ITPA chr20:3204012 3'AG 3204012 Downstream 10bp
chr15 74180048 74180048 1 + G T THYM 74180045 + 74180025 74180065 41 TGGTGCGGGAGCAGGTGCTGCAGGAAAGCATGGGCGGGGAT TGGTGCGGGAGCAGGTGCTGCAGTAAAGCATGGGCGGGGAT < 41bp 0.914436486440338 0.657156120266077 0.8169664 0.36373308 prediction 0.514560732348522 Functional Loss - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74180045 chr15:74180048 stopgain 0.899 0 24 hm5C_associated_SNPs_63021 0 0 0 0 2 TBC1D21 chr15:74179961 3'AG 74179961 Downstream 88bp
chr15 74180048 74180048 1 + G T THYM 74180045 + 74180025 74180065 41 TGGTGCGGGAGCAGGTGCTGCAGGAAAGCATGGGCGGGGAT TGGTGCGGGAGCAGGTGCTGCAGTAAAGCATGGGCGGGGAT < 41bp 0.914436486440338 0.657156120266077 0.8169664 0.36373308 prediction 0.514560732348522 Functional Loss - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74180045 chr15:74180048 stopgain 0.899 0 24 hm5C_associated_SNPs_63021 0 0 0 0 2 TBC1D21 chr15:74180077 5'GT 74180077 Upstream 30bp
chr10 81372990 81372990 1 + A T LUSC 81372986 + 81372966 81373006 41 AGGAGCTCCAAGCCACACTCCACGACTTTAGACATCAAATC AGGAGCTCCAAGCCACACTCCACGTCTTTAGACATCAAATC < 41bp 0.75727803924788 0.437492101710363 0.02465105 0.03366849 prediction 0.514556078495761 Functional Loss - SFTPA1 ENSG00000122852 CDS Human protein_coding chr10:81372986 chr10:81372990 nonsynonymous SNV 0.677 3 25 hm5C_associated_SNPs_63022 0 0 0 0 3 SFTPA1 chr10:81372945 3'AG 81372945 Downstream 46bp
chr10 81372990 81372990 1 + A T LUSC 81372986 + 81372966 81373006 41 AGGAGCTCCAAGCCACACTCCACGACTTTAGACATCAAATC AGGAGCTCCAAGCCACACTCCACGTCTTTAGACATCAAATC < 41bp 0.75727803924788 0.437492101710363 0.02465105 0.03366849 prediction 0.514556078495761 Functional Loss - SFTPA1 ENSG00000122852 CDS Human protein_coding chr10:81372986 chr10:81372990 nonsynonymous SNV 0.677 3 25 hm5C_associated_SNPs_63022 0 0 0 0 3 SFTPA1 chr10:81372978 3'AG 81372978 Downstream 13bp
chr10 81372990 81372990 1 + A T LUSC 81372986 + 81372966 81373006 41 AGGAGCTCCAAGCCACACTCCACGACTTTAGACATCAAATC AGGAGCTCCAAGCCACACTCCACGTCTTTAGACATCAAATC < 41bp 0.75727803924788 0.437492101710363 0.02465105 0.03366849 prediction 0.514556078495761 Functional Loss - SFTPA1 ENSG00000122852 CDS Human protein_coding chr10:81372986 chr10:81372990 nonsynonymous SNV 0.677 3 25 hm5C_associated_SNPs_63022 0 0 0 0 3 SFTPA1 chr10:81373022 5'GT 81373022 Upstream 33bp
chrX 47101705 47101705 1 + G T LUSC 47101703 + 47101683 47101723 41 ATCCGCGCCGCAAGCCAGAGCAGGTGTGGGGCAGTGGGGGC ATCCGCGCCGCAAGCCAGAGCATGTGTGGGGCAGTGGGGGC < 41bp 0.757261477886468 0.397545530762445 0.867259 0.2911123 prediction 0.514522955772935 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47101703 chrX:47101705 nonsynonymous SNV 0.960 4 23 hm5C_associated_SNPs_63025 0 0 1 0 1 USP11 chrX:47101705 5'GT 47101705 Upstream 1bp
chr7 2742411 2742411 1 + A C rs61738701 2742410 + 2742390 2742430 41 GCACCAGCTGTGCAGCTGCACAGAGGCCTTCTTCCTGGGCC GCACCAGCTGTGCAGCTGCACCGAGGCCTTCTTCCTGGGCC < 41bp 0.757251077068066 0.495345007398419 0.51844066 0.32402304 prediction 0.514502154136132 Functional Loss - AMZ1 ENSG00000174945 CDS Human protein_coding chr7:2742410 chr7:2742411 synonymous SNV . 0 22 hm5C_associated_SNPs_63028 0 0 0 0 1 AMZ1 chr7:2742356 3'AG 2742356 Downstream 56bp
chr4 37848688 37848688 1 + A T LUAD 37848684 + 37848664 37848704 41 ATGTTGTCCAGCACCGTCTCCTCCAAAATCTTGCGGGCCAT ATGTTGTCCAGCACCGTCTCCTCCTAAATCTTGCGGGCCAT < 41bp 0.757247683513894 0.406998111292781 0.959708 0.02901563 prediction 0.514495367027788 Functional Loss - PGM2 ENSG00000169299 CDS Human protein_coding chr4:37848684 chr4:37848688 stopgain 1.000 1 25 hm5C_associated_SNPs_63030 0 0 0 0 1 PGM2 chr4:37848732 5'GT 37848732 Upstream 45bp
chr7 99219167 99219167 1 + G T BRCA 99219165 + 99219145 99219185 41 GGAGCAGCTCAGTCAGGACCCTGGAGATGAGACACGGGCCT GGAGCAGCTCAGTCAGGACCCTTGAGATGAGACACGGGCCT < 41bp 0.875353116698666 0.618106775939918 0.36498648 0.2963776 prediction 0.514492681517496 Functional Loss - ZSCAN25 ENSG00000197037 CDS Human protein_coding chr7:99219165 chr7:99219167 stopgain 0.482 0 23 hm5C_associated_SNPs_63031 0 0 1 0 1 ZSCAN25 chr7:99219197 5'GT 99219197 Upstream 31bp
chr20 43052756 43052756 1 + C T LGG 43052754 + 43052734 43052774 41 CAACGACCGCCAGTATGACTCGCGTGGCCGCTTTGGAGAGC CAACGACCGCCAGTATGACTCGTGTGGCCGCTTTGGAGAGC < 41bp 0.776275933412787 0.51903629852376 0.3292367 0.3404808 prediction 0.514479269778054 Functional Loss - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43052754 chr20:43052756 nonsynonymous SNV 0.172 3 23 hm5C_associated_SNPs_63034 2 0 1 0 1 HNF4A chr20:43052658 3'AG 43052658 Downstream 99bp
chr16 76501361 76501361 1 + G T LUSC 76501359 + 76501339 76501379 41 TGGTAGATCTGATTTCAGTTCAGCAGGGGTCCCTTGGGAAC TGGTAGATCTGATTTCAGTTCATCAGGGGTCCCTTGGGAAC < 41bp 0.757239548449418 0.43061290070481 0.34813416 0.32619852 prediction 0.514479096898836 Functional Loss - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76501359 chr16:76501361 nonsynonymous SNV 0.913 3 23 hm5C_associated_SNPs_63035 0 0 0 0 1 CNTNAP4 chr16:76501420 5'GT 76501420 Upstream 60bp
chr20 4680094 4680094 1 + C T rs112637437 4680092 + 4680072 4680112 41 ATGGTGGTGGCTGGGGGCAGCCCCATGGTGGTGGCTGGGGA ATGGTGGTGGCTGGGGGCAGCCTCATGGTGGTGGCTGGGGA < 41bp 0.783004675153133 0.525786230081855 0.86861664 0.45055985 prediction 0.514436890142556 Functional Loss - PRNP ENSG00000171867 CDS Human protein_coding chr20:4680092 chr20:4680094 synonymous SNV . 0 23 hm5C_associated_SNPs_63039 2 0 1 0 1 PRNP chr20:4680125 5'GT 4680125 Upstream 32bp
chr19 17394674 17394674 1 + G T LUAD 17394672 + 17394652 17394692 41 CTGTGTCTGACTTGGAGTTGCTGAAGGGACTCCGAGCACTT CTGTGTCTGACTTGGAGTTGCTTAAGGGACTCCGAGCACTT < 41bp 0.757216798597852 0.424816427627511 0.36911464 0.2134738 prediction 0.514433597195703 Functional Loss - ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17394672 chr19:17394674 synonymous SNV . 0 23 hm5C_associated_SNPs_63040 0 0 0 0 2 ANKLE1 chr19:17394693 5'GT 17394693 Upstream 20bp
chr19 17394674 17394674 1 + G T LUAD 17394672 + 17394652 17394692 41 CTGTGTCTGACTTGGAGTTGCTGAAGGGACTCCGAGCACTT CTGTGTCTGACTTGGAGTTGCTTAAGGGACTCCGAGCACTT < 41bp 0.757216798597852 0.424816427627511 0.36911464 0.2134738 prediction 0.514433597195703 Functional Loss - ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17394672 chr19:17394674 synonymous SNV . 0 23 hm5C_associated_SNPs_63040 0 0 0 0 2 ANKLE1 chr19:17394771 5'GT 17394771 Upstream 98bp
chr20 37631466 37631466 1 + C T SKCM 37631464 + 37631444 37631484 41 TCGAAACTGTGGTGAAAATTCACCAGACAGAGGGAGACGGA TCGAAACTGTGGTGAAAATTCATCAGACAGAGGGAGACGGA < 41bp 0.826645557173421 0.56943036507144 0.20338961 0.18904951 prediction 0.514430384203961 Functional Loss - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37631464 chr20:37631466 synonymous SNV . 0 23 hm5C_associated_SNPs_63041 0 0 1 0 2 DHX35 chr20:37631415 3'AG 37631415 Downstream 52bp
chr20 37631466 37631466 1 + C T SKCM 37631464 + 37631444 37631484 41 TCGAAACTGTGGTGAAAATTCACCAGACAGAGGGAGACGGA TCGAAACTGTGGTGAAAATTCATCAGACAGAGGGAGACGGA < 41bp 0.826645557173421 0.56943036507144 0.20338961 0.18904951 prediction 0.514430384203961 Functional Loss - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37631464 chr20:37631466 synonymous SNV . 0 23 hm5C_associated_SNPs_63041 0 0 1 0 2 DHX35 chr20:37631511 5'GT 37631511 Upstream 46bp
chr8 145732180 145732180 1 + G C rs147998249 145732176 + 145732156 145732196 41 CTGGAGGAGACCGGCATCTGCGTGGTGCCAGGGAGCGGCTT CTGGAGGAGACCGGCATCTGCGTGCTGCCAGGGAGCGGCTT < 41bp 0.801177759105698 0.543963126298276 0.3771099 0.2683092 prediction 0.514429265614845 Functional Loss - GPT ENSG00000167701 CDS Human protein_coding chr8:145732176 chr8:145732180 nonsynonymous SNV 0.950 2 25 hm5C_associated_SNPs_63042 0 0 1 0 2 GPT chr8:145732114 3'AG 145732114 Downstream 67bp
chr8 145732180 145732180 1 + G C rs147998249 145732176 + 145732156 145732196 41 CTGGAGGAGACCGGCATCTGCGTGGTGCCAGGGAGCGGCTT CTGGAGGAGACCGGCATCTGCGTGCTGCCAGGGAGCGGCTT < 41bp 0.801177759105698 0.543963126298276 0.3771099 0.2683092 prediction 0.514429265614845 Functional Loss - GPT ENSG00000167701 CDS Human protein_coding chr8:145732176 chr8:145732180 nonsynonymous SNV 0.950 2 25 hm5C_associated_SNPs_63042 0 0 1 0 2 GPT chr8:145732226 5'GT 145732226 Upstream 47bp
chr1 36319173 36319173 1 + C T UCEC 36319171 + 36319151 36319191 41 TGGCTAAGGCTGTGCAAATCCACCATGATACCCAGCACACG TGGCTAAGGCTGTGCAAATCCATCATGATACCCAGCACACG < 41bp 0.757212298477302 0.486195801198292 0.24230203 0.04018557 prediction 0.514424596954603 Functional Loss - AGO4 ENSG00000134698 CDS Human protein_coding chr1:36319171 chr1:36319173 synonymous SNV . 0 23 hm5C_associated_SNPs_63043 0 0 0 0 1 AGO4 chr1:36319098 3'AG 36319098 Downstream 76bp
chr2 27167672 27167672 1 + A C SKCM 27167668 + 27167648 27167688 41 ATGGGGGCATGAGGGACCTTCACGAATCCAGCTTCAGCCTC ATGGGGGCATGAGGGACCTTCACGCATCCAGCTTCAGCCTC < 41bp 0.925991752699295 0.668795563636291 0.16069382 0.1145702 prediction 0.514392378126008 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27167668 chr2:27167672 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_63045 0 0 1 0 1 DPYSL5 chr2:27167692 5'GT 27167692 Upstream 21bp
chr10 7763634 7763634 1 + C T UCEC 7763632 + 7763612 7763652 41 GCGCACGTCTCCTTCAAGCCCACGGTAGCACAGCAGAGAAT GCGCACGTCTCCTTCAAGCCCATGGTAGCACAGCAGAGAAT < 41bp 0.757193439170509 0.491653882862905 0.14714485 0.1536851 prediction 0.514386878341018 Functional Loss - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7763632 chr10:7763634 nonsynonymous SNV 0.361 3 23 hm5C_associated_SNPs_63046 0 0 1 0 1 ITIH2 chr10:7763612 3'AG 7763612 Downstream 23bp
chr1 41300770 41300770 1 + G C LUAD 41300769 + 41300749 41300789 41 GGATCAAGAGCCTGCAAACTCGGTGGGTGCACCGGGCCTGT GGATCAAGAGCCTGCAAACTCCGTGGGTGCACCGGGCCTGT < 41bp 0.839288614105773 0.582101576246569 0.8954102 0.8031898 prediction 0.514374075718407 Functional Loss - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41300769 chr1:41300770 nonsynonymous SNV 0.992 5 22 hm5C_associated_SNPs_63047 0 0 0 0 1 KCNQ4 chr1:41300770 5'GT 41300770 Upstream 1bp
chr12 109945424 109945424 1 + C T GBM 109945422 + 109945402 109945442 41 TGTGGGCATTTATCTGTGAGCTCGGGCCCCACGGAGGGTTA TGTGGGCATTTATCTGTGAGCTTGGGCCCCACGGAGGGTTA < 41bp 0.757175896995009 0.485530149251448 0.1460537 0.16550556 prediction 0.514351793990019 Functional Loss - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109945422 chr12:109945424 synonymous SNV . 0 23 hm5C_associated_SNPs_63048 0 0 1 0 1 UBE3B chr12:109945369 3'AG 109945369 Downstream 56bp
chrX 54578117 54578117 1 + A C STAD 54578113 + 54578093 54578133 41 TGCGTAACTGCGTCCACGTGCAGAAGCTGGCAGACCCTGTG TGCGTAACTGCGTCCACGTGCAGACGCTGGCAGACCCTGTG < 41bp 0.757174867101732 0.348043026098573 0.3082258 0.2616871 prediction 0.514349734203463 Functional Loss - GNL3L ENSG00000130119 CDS Human protein_coding chrX:54578113 chrX:54578117 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_63049 0 0 1 1 1 GNL3L chrX:54578175 5'GT 54578175 Upstream 59bp
chr4 154523459 154523459 1 + G T LUAD 154523456 + 154523436 154523476 41 TGGATTGTCATCAGTTTTCCCTGGACCCAAACACATCCCGC TGGATTGTCATCAGTTTTCCCTGTACCCAAACACATCCCGC < 41bp 0.757145147710656 0.384446828110327 0.20803967 0.10047728 prediction 0.514290295421312 Functional Loss - TMEM131L ENSG00000121210 CDS Human protein_coding chr4:154523456 chr4:154523459 nonsynonymous SNV 0.956 2 24 hm5C_associated_SNPs_63052 0 0 0 0 1 TMEM131L chr4:154523490 5'GT 154523490 Upstream 32bp
chrX 78216100 78216100 1 + C T CESC 78216098 + 78216078 78216118 41 GCTGAGATTTACTGTAATGTCACTAATGTGAAATTTCAATA GCTGAGATTTACTGTAATGTCATTAATGTGAAATTTCAATA < 41bp 0.75713354479364 0.495610518943316 0.13885689 0.14611995 prediction 0.51426708958728 Functional Loss - P2RY10 ENSG00000078589 CDS Human protein_coding chrX:78216098 chrX:78216100 nonsynonymous SNV 0.062 0 23 hm5C_associated_SNPs_63056 0 0 0 0 1 P2RY10 chrX:78216005 3'AG 78216005 Downstream 96bp
chr6 126080350 126080350 1 + C T SKCM 126080348 + 126080328 126080368 41 GAAGTTGCGCGGTACCTGAGCTCCGTGGAAGGCCTGGACTC GAAGTTGCGCGGTACCTGAGCTTCGTGGAAGGCCTGGACTC < 41bp 0.79258739720938 0.535460441974288 0.32261574 0.31553775 prediction 0.514253910470182 Functional Loss - HEY2 ENSG00000135547 CDS Human protein_coding chr6:126080348 chr6:126080350 nonsynonymous SNV 0.987 2 23 hm5C_associated_SNPs_63057 0 0 1 0 1 HEY2 chr6:126080263 3'AG 126080263 Downstream 88bp
chr2 27888132 27888132 1 + G T BLCA 27888129 + 27888109 27888149 41 GGAAGATAAATGCTGGTAGCCAAGATGATGAGATGGGTTGC GGAAGATAAATGCTGGTAGCCAATATGATGAGATGGGTTGC < 41bp 0.757125796785049 0.372947336724146 0.45762852 0.16430008 prediction 0.514251593570098 Functional Loss - SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27888129 chr2:27888132 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_63058 0 0 1 0 1 SLC4A1AP chr2:27888162 5'GT 27888162 Upstream 31bp
chr7 150417172 150417172 1 + C T rs75609333 150417170 + 150417150 150417190 41 GCTCAGTCCCGGCAGGAGTCCACGCGGAGGCTCATCCTTGT GCTCAGTCCCGGCAGGAGTCCATGCGGAGGCTCATCCTTGT < 41bp 0.758011538395834 0.500887118010166 0.58233863 0.41963622 prediction 0.514248840771335 Functional Loss - GIMAP1;GIMAP1-GIMAP5 ENSG00000213203 CDS Human protein_coding chr7:150417170 chr7:150417172 nonsynonymous SNV 0.003 2 23 hm5C_associated_SNPs_63059 0 0 0 0 1 GIMAP1;GIMAP1-GIMAP5 chr7:150417136 3'AG 150417136 Downstream 37bp
chrX 44949096 44949096 1 + G T BLCA 44949093 + 44949073 44949113 41 CAGCGACCTGGAGATTTGGTCTGGATAAATGCAGGCACTGT CAGCGACCTGGAGATTTGGTCTGTATAAATGCAGGCACTGT < 41bp 0.757117154311021 0.400007715619892 0.3938582 0.27416715 prediction 0.514234308622042 Functional Loss - KDM6A ENSG00000147050 CDS Human protein_coding chrX:44949093 chrX:44949096 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_63061 0 0 0 0 1 KDM6A chrX:44949175 5'GT 44949175 Upstream 80bp
chr1 168549321 168549321 1 + G C rs56148248 168549317 + 168549297 168549337 41 CCAGGTGTAGGGAGTGAAGTCTCAGATAAGAGGACCTGTGT CCAGGTGTAGGGAGTGAAGTCTCACATAAGAGGACCTGTGT < 41bp 0.809828843948789 0.552721924670233 0.31636977 0.22891545 prediction 0.514213838557113 Functional Loss - XCL1 ENSG00000143184 CDS Human protein_coding chr1:168549317 chr1:168549321 nonsynonymous SNV 0.713 0 25 hm5C_associated_SNPs_63064 0 0 1 0 2 XCL1 chr1:168549301 3'AG 168549301 Downstream 21bp
chr1 168549321 168549321 1 + G C rs56148248 168549317 + 168549297 168549337 41 CCAGGTGTAGGGAGTGAAGTCTCAGATAAGAGGACCTGTGT CCAGGTGTAGGGAGTGAAGTCTCACATAAGAGGACCTGTGT < 41bp 0.809828843948789 0.552721924670233 0.31636977 0.22891545 prediction 0.514213838557113 Functional Loss - XCL1 ENSG00000143184 CDS Human protein_coding chr1:168549317 chr1:168549321 nonsynonymous SNV 0.713 0 25 hm5C_associated_SNPs_63064 0 0 1 0 2 XCL1 chr1:168549415 5'GT 168549415 Upstream 95bp
chr8 27657189 27657189 1 + G T LUSC 27657187 + 27657167 27657207 41 GTAGAATCTGGGTTTTCAGACTGAAGAGAAGAAAGCGCATT GTAGAATCTGGGTTTTCAGACTTAAGAGAAGAAAGCGCATT < 41bp 0.757094474899356 0.43777055588536 0.24411082 0.27237788 prediction 0.514188949798712 Functional Loss - ESCO2 ENSG00000171320 CDS Human protein_coding chr8:27657187 chr8:27657189 synonymous SNV . 0 23 hm5C_associated_SNPs_63068 0 0 1 2 1 ESCO2 chr8:27657233 5'GT 27657233 Upstream 45bp
chr2 27247084 27247084 1 + C T CESC 27247082 + 27247062 27247102 41 GGATTACAACCCTCTGCTGGCGCGGCAGGGCCAGGACGTAG GGATTACAACCCTCTGCTGGCGTGGCAGGGCCAGGACGTAG < 41bp 0.765041785370305 0.50795381244175 0.36176604 0.39455497 prediction 0.51417594585711 Functional Loss - MAPRE3 ENSG00000084764 CDS Human protein_coding chr2:27247082 chr2:27247084 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_63071 0 0 1 0 1 MAPRE3 chr2:27247165 5'GT 27247165 Upstream 82bp
chr1 78481780 78481780 1 + G T LUAD 78481777 + 78481757 78481797 41 AGTAAATGATATTGTGAAACCCGGAATGAGGAGAAGAATTA AGTAAATGATATTGTGAAACCCGTAATGAGGAGAAGAATTA < 41bp 0.757081732406181 0.403199296446705 0.18237537 0.10782203 prediction 0.514163464812363 Functional Loss - DNAJB4 ENSG00000162616 CDS Human protein_coding chr1:78481777 chr1:78481780 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_63072 0 0 1 0 1 DNAJB4 chr1:78481698 3'AG 78481698 Downstream 83bp
chr1 156876505 156876505 1 + G T UCEC 156876502 + 156876482 156876522 41 AACAACAGCTCGTGTGATCCCAAGAGTGGGGTATGTTCTTG AACAACAGCTCGTGTGATCCCAATAGTGGGGTATGTTCTTG < 41bp 0.911770790859955 0.654692887296979 0.37818 0.024643868 prediction 0.514155807125951 Functional Loss - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156876502 chr1:156876505 nonsynonymous SNV 0.990 0 24 hm5C_associated_SNPs_63073 0 0 0 0 1 PEAR1 chr1:156876511 5'GT 156876511 Upstream 7bp
chr8 57127181 57127181 1 + G T LUSC 57127178 + 57127158 57127198 41 AAGAAGACTGTTAGAATGCCCTCGGTAACACAGAGGCTGAG AAGAAGACTGTTAGAATGCCCTCTGTAACACAGAGGCTGAG < 41bp 0.757075980365647 0.381094767229131 0.12783214 0.14688423 prediction 0.514151960731294 Functional Loss - CHCHD7 ENSG00000170791 CDS Human protein_coding chr8:57127178 chr8:57127181 synonymous SNV . 0 24 hm5C_associated_SNPs_63074 0 0 1 0 2 CHCHD7 chr8:57127157 3'AG 57127157 Downstream 25bp
chr8 57127181 57127181 1 + G T LUSC 57127178 + 57127158 57127198 41 AAGAAGACTGTTAGAATGCCCTCGGTAACACAGAGGCTGAG AAGAAGACTGTTAGAATGCCCTCTGTAACACAGAGGCTGAG < 41bp 0.757075980365647 0.381094767229131 0.12783214 0.14688423 prediction 0.514151960731294 Functional Loss - CHCHD7 ENSG00000170791 CDS Human protein_coding chr8:57127178 chr8:57127181 synonymous SNV . 0 24 hm5C_associated_SNPs_63074 0 0 1 0 2 CHCHD7 chr8:57127226 5'GT 57127226 Upstream 46bp
chr12 53668742 53668742 1 + G C GBM 53668738 + 53668718 53668758 41 ATGGCTGAGCCAGTCACTTTCTGGGTTCGGGTCAAGATGGA ATGGCTGAGCCAGTCACTTTCTGGCTTCGGGTCAAGATGGA < 41bp 0.828987717070844 0.571912605050117 0.86244 0.15332496 prediction 0.514150224041453 Functional Loss - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53668738 chr12:53668742 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_63075 0 0 1 0 1 ESPL1 chr12:53668794 5'GT 53668794 Upstream 53bp
chr8 39442834 39442834 1 + A C UCEC 39442830 + 39442810 39442850 41 TTCTGCATGTCACAGTTCCACGGAAGATTAAGTCAAATGAC TTCTGCATGTCACAGTTCCACGGACGATTAAGTCAAATGAC < 41bp 0.757071115455525 0.364694526041176 0.13045219 0.100480735 prediction 0.514142230911049 Functional Loss - ADAM18 ENSG00000168619 CDS Human protein_coding chr8:39442830 chr8:39442834 nonsynonymous SNV 0.004 3 25 hm5C_associated_SNPs_63076 0 0 0 0 2 ADAM18 chr8:39442795 3'AG 39442795 Downstream 40bp
chr8 39442834 39442834 1 + A C UCEC 39442830 + 39442810 39442850 41 TTCTGCATGTCACAGTTCCACGGAAGATTAAGTCAAATGAC TTCTGCATGTCACAGTTCCACGGACGATTAAGTCAAATGAC < 41bp 0.757071115455525 0.364694526041176 0.13045219 0.100480735 prediction 0.514142230911049 Functional Loss - ADAM18 ENSG00000168619 CDS Human protein_coding chr8:39442830 chr8:39442834 nonsynonymous SNV 0.004 3 25 hm5C_associated_SNPs_63076 0 0 0 0 2 ADAM18 chr8:39442871 5'GT 39442871 Upstream 38bp
chr14 106386988 106386988 1 + G T UCEC 106386985 + 106386965 106387005 41 AGGGAGCGGCTCTCAGGTCCCGAGAAAGACCTTCCTGGCCA AGGGAGCGGCTCTCAGGTCCCGATAAAGACCTTCCTGGCCA < 41bp 0.757054520517037 0.377583961977758 0.8796214 0.38258687 prediction 0.514109041034074 Functional Loss - FAM30A ENSG00000226777 CDS Human lincRNA chr14:106386985 chr14:106386988 stopgain . 0 24 hm5C_associated_SNPs_63078 0 0 0 0 1 FAM30A chr14:106386922 3'AG 106386922 Downstream 67bp
chr19 4290529 4290529 1 + A T HNSC 4290525 + 4290505 4290545 41 GGCCAACACAGCGGGCCCTTCCCCAGCGTGCCCGAGCTCGT GGCCAACACAGCGGGCCCTTCCCCTGCGTGCCCGAGCTCGT < 41bp 0.757053411730496 0.422828573392243 0.047118843 0.016292423 prediction 0.514106823460992 Functional Loss - SHD ENSG00000105251 CDS Human protein_coding chr19:4290525 chr19:4290529 nonsynonymous SNV 0.904 3 25 hm5C_associated_SNPs_63079 0 0 0 0 1 SHD chr19:4290444 3'AG 4290444 Downstream 86bp
chr3 23960920 23960920 1 + C T rs576343717 23960918 + 23960898 23960938 41 TTGGAAAGGGCCACAAGTTCCACCACACTATTGGTGGCTCT TTGGAAAGGGCCACAAGTTCCATCACACTATTGGTGGCTCT < 41bp 0.757042610917798 0.489004380192827 0.18039829 0.34786826 prediction 0.514085221835596 Functional Loss - RPL15 ENSG00000174748 CDS Human protein_coding chr3:23960918 chr3:23960920 synonymous SNV . 0 23 hm5C_associated_SNPs_63083 0 0 1 0 1 RPL15 chr3:23960841 3'AG 23960841 Downstream 80bp
chr16 76482755 76482755 1 + G T LUAD 76482753 + 76482733 76482773 41 ATTGGCATTCAGTGCTCATCCAGCGTTTGGGCAAACAAGTC ATTGGCATTCAGTGCTCATCCATCGTTTGGGCAAACAAGTC < 41bp 0.757042384430733 0.420059088642283 0.16111976 0.016316593 prediction 0.514084768861466 Functional Loss - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76482753 chr16:76482755 nonsynonymous SNV 0.772 1 23 hm5C_associated_SNPs_63084 0 0 0 0 2 CNTNAP4 chr16:76482664 3'AG 76482664 Downstream 92bp
chr16 76482755 76482755 1 + G T LUAD 76482753 + 76482733 76482773 41 ATTGGCATTCAGTGCTCATCCAGCGTTTGGGCAAACAAGTC ATTGGCATTCAGTGCTCATCCATCGTTTGGGCAAACAAGTC < 41bp 0.757042384430733 0.420059088642283 0.16111976 0.016316593 prediction 0.514084768861466 Functional Loss - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76482753 chr16:76482755 nonsynonymous SNV 0.772 1 23 hm5C_associated_SNPs_63084 0 0 0 0 2 CNTNAP4 chr16:76482848 5'GT 76482848 Upstream 94bp
chr16 81812956 81812956 1 + G C rs573256971 81812955 + 81812935 81812975 41 CTGAGTGACCCGAGTCGGGACGCGGGCTGCGCGCGCGGGAC CTGAGTGACCCGAGTCGGGACCCGGGCTGCGCGCGCGGGAC < 41bp 0.816032745002903 0.558998959296763 0.8788418 0.8262624 prediction 0.514067571412279 Functional Loss - PLCG2 ENSG00000197943 UTR5 Human protein_coding chr16:81812955 chr16:81812956 . . 0 22 hm5C_associated_SNPs_63085 0 0 0 0 1 PLCG2 chr16:81813029 5'GT 81813029 Upstream 74bp
chr7 5340091 5340091 1 + C T GBM 5340089 + 5340069 5340109 41 CCGTGGACTGGCGGGGCACCCACCTGCTGGCCTGCTCCTGC CCGTGGACTGGCGGGGCACCCATCTGCTGGCCTGCTCCTGC < 41bp 0.765392640473309 0.508368399764052 0.19291839 0.21207324 prediction 0.514048481418514 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5340089 chr7:5340091 synonymous SNV . 0 23 hm5C_associated_SNPs_63087 0 0 0 0 1 SLC29A4 chr7:5340053 3'AG 5340053 Downstream 39bp
chr5 235283 235283 1 + C T STAD 235281 + 235261 235301 41 GCTGTGGCCCTGAGAAAGATCACGTCTACCTGCAGCTGCAC GCTGTGGCCCTGAGAAAGATCATGTCTACCTGCAGCTGCAC < 41bp 0.766474605084815 0.509455402116517 0.32456976 0.23598483 prediction 0.514038405936595 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:235281 chr5:235283 synonymous SNV . 0 23 hm5C_associated_SNPs_63088 3 0 1 0 1 SDHA chr5:235259 3'AG 235259 Downstream 25bp
chr19 50161552 50161552 1 + A C KIRP 50161548 + 50161528 50161568 41 GTCCAGCGCTACCGCTACTTCCGCAAGCACGGTCGCAAGCC GTCCAGCGCTACCGCTACTTCCGCCAGCACGGTCGCAAGCC < 41bp 0.757010067856613 0.359137126117715 0.19234896 0.25858784 prediction 0.514020135713226 Functional Loss - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50161548 chr19:50161552 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_63089 0 0 1 0 1 SCAF1 chr19:50161465 3'AG 50161465 Downstream 88bp
chr1 151237343 151237343 1 + G T UCEC 151237340 + 151237320 151237360 41 CACCGACAAGGCAAGAATCACAAGATGCGCATCATTGCCTT CACCGACAAGGCAAGAATCACAATATGCGCATCATTGCCTT < 41bp 0.910644640804281 0.653648469613517 0.8489636 0.15433112 prediction 0.513992342381528 Functional Loss - PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151237340 chr1:151237343 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_63093 0 0 1 0 2 PSMD4 chr1:151237308 3'AG 151237308 Downstream 36bp
chr1 151237343 151237343 1 + G T UCEC 151237340 + 151237320 151237360 41 CACCGACAAGGCAAGAATCACAAGATGCGCATCATTGCCTT CACCGACAAGGCAAGAATCACAATATGCGCATCATTGCCTT < 41bp 0.910644640804281 0.653648469613517 0.8489636 0.15433112 prediction 0.513992342381528 Functional Loss - PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151237340 chr1:151237343 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_63093 0 0 1 0 2 PSMD4 chr1:151237394 5'GT 151237394 Upstream 52bp
chr17 65733721 65733721 1 + G T BLCA 65733718 + 65733698 65733738 41 TGTCATTGGGGACACAGTAACAGGACTTCTGGAAAGGTGTA TGTCATTGGGGACACAGTAACAGTACTTCTGGAAAGGTGTA < 41bp 0.904132690538633 0.647149470996222 0.71527076 0.29729939 prediction 0.513966439084822 Functional Loss - NOL11 ENSG00000130935 CDS Human protein_coding chr17:65733718 chr17:65733721 nonsynonymous SNV 0.544 0 24 hm5C_associated_SNPs_63095 0 0 1 0 2 NOL11 chr17:65733624 3'AG 65733624 Downstream 98bp
chr17 65733721 65733721 1 + G T BLCA 65733718 + 65733698 65733738 41 TGTCATTGGGGACACAGTAACAGGACTTCTGGAAAGGTGTA TGTCATTGGGGACACAGTAACAGTACTTCTGGAAAGGTGTA < 41bp 0.904132690538633 0.647149470996222 0.71527076 0.29729939 prediction 0.513966439084822 Functional Loss - NOL11 ENSG00000130935 CDS Human protein_coding chr17:65733718 chr17:65733721 nonsynonymous SNV 0.544 0 24 hm5C_associated_SNPs_63095 0 0 1 0 2 NOL11 chr17:65733808 5'GT 65733808 Upstream 88bp
chr22 18566266 18566266 1 + C T BLCA 18566264 + 18566244 18566284 41 TGGATGTGGTGGGTGCCTGGCTCCAAGACCCAGCCAATCAA TGGATGTGGTGGGTGCCTGGCTTCAAGACCCAGCCAATCAA < 41bp 0.756983173539938 0.453602362588078 0.93355095 0.041394323 prediction 0.513966347079877 Functional Loss - PEX26 ENSG00000215193 CDS Human protein_coding chr22:18566264 chr22:18566266 synonymous SNV . 0 23 hm5C_associated_SNPs_63096 0 0 1 0 1 PEX26 chr22:18566203 3'AG 18566203 Downstream 64bp
chr16 82101832 82101832 1 + C T BLCA 82101830 + 82101810 82101850 41 TATCTGGATGAGCTGGGCTTCACGGTATTTGCCGGAGTTTT TATCTGGATGAGCTGGGCTTCATGGTATTTGCCGGAGTTTT < 41bp 0.778536545042706 0.52158928397841 0.16435102 0.17878497 prediction 0.513894522128592 Functional Loss - HSD17B2 ENSG00000086696 CDS Human protein_coding chr16:82101830 chr16:82101832 nonsynonymous SNV 0.543 1 23 hm5C_associated_SNPs_63101 0 0 1 0 1 HSD17B2 chr16:82101775 3'AG 82101775 Downstream 58bp
chr22 32464012 32464012 1 + G T LUAD 32464009 + 32463989 32464029 41 TGTCCCCATCTATATTAAGGCTGGGGTAAGTATCTGCTCTG TGTCCCCATCTATATTAAGGCTGTGGTAAGTATCTGCTCTG < 41bp 0.756944410248302 0.371187089394725 0.8162368 0.16265741 prediction 0.513888820496604 Functional Loss - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32464009 chr22:32464012 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_63102 0 0 0 0 2 SLC5A1 chr22:32463954 3'AG 32463954 Downstream 59bp
chr22 32464012 32464012 1 + G T LUAD 32464009 + 32463989 32464029 41 TGTCCCCATCTATATTAAGGCTGGGGTAAGTATCTGCTCTG TGTCCCCATCTATATTAAGGCTGTGGTAAGTATCTGCTCTG < 41bp 0.756944410248302 0.371187089394725 0.8162368 0.16265741 prediction 0.513888820496604 Functional Loss - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32464009 chr22:32464012 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_63102 0 0 0 0 2 SLC5A1 chr22:32464013 5'GT 32464013 Upstream 2bp
chr12 57971840 57971840 1 + G T UCEC 57971837 + 57971817 57971857 41 ACCTTCGCAAGCTGTTCGTTCAAGACGTCACGACTCGAGTC ACCTTCGCAAGCTGTTCGTTCAATACGTCACGACTCGAGTC < 41bp 0.75694342087602 0.357516486345157 0.40358835 0.022193193 prediction 0.51388684175204 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57971837 chr12:57971840 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_63103 0 0 0 0 2 KIF5A chr12:57971792 3'AG 57971792 Downstream 49bp
chr12 57971840 57971840 1 + G T UCEC 57971837 + 57971817 57971857 41 ACCTTCGCAAGCTGTTCGTTCAAGACGTCACGACTCGAGTC ACCTTCGCAAGCTGTTCGTTCAATACGTCACGACTCGAGTC < 41bp 0.75694342087602 0.357516486345157 0.40358835 0.022193193 prediction 0.51388684175204 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57971837 chr12:57971840 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_63103 0 0 0 0 2 KIF5A chr12:57971863 5'GT 57971863 Upstream 24bp
chr17 76167080 76167080 1 + G C DLBC 76167076 + 76167056 76167096 41 GGTGGTCGACGCGTATTTCCCCCAGATCAGCAACGCCACTG GGTGGTCGACGCGTATTTCCCCCACATCAGCAACGCCACTG < 41bp 0.756943037307792 0.474784734805564 0.15974295 0.09690341 prediction 0.513886074615583 Functional Loss - SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167076 chr17:76167080 nonsynonymous SNV 0.970 3 25 hm5C_associated_SNPs_63104 0 0 0 0 1 SYNGR2 chr17:76167135 5'GT 76167135 Upstream 56bp
chr15 101436251 101436251 1 + G C COAD 101436247 + 101436227 101436267 41 GATCGCCTTCACCGGCTCCACAGAGGTAACCCTCCTCACAG GATCGCCTTCACCGGCTCCACAGACGTAACCCTCCTCACAG < 41bp 0.829300456034081 0.572359292664213 0.81134367 0.2797173 prediction 0.513882326739737 Functional Loss - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101436247 chr15:101436251 nonsynonymous SNV 0.423 1 25 hm5C_associated_SNPs_63105 0 0 0 0 1 ALDH1A3 chr15:101436251 5'GT 101436251 Upstream 1bp
chr9 99250498 99250498 1 + G T UCEC 99250496 + 99250476 99250516 41 CGTGGAGCCAGAGGAGGCACCCGGGGAGGCCGGGGAAGGAT CGTGGAGCCAGAGGAGGCACCCTGGGAGGCCGGGGAAGGAT < 41bp 0.75693937260889 0.403280320429426 0.9010457 0.775046 prediction 0.51387874521778 Functional Loss - HABP4 ENSG00000130956 CDS Human protein_coding chr9:99250496 chr9:99250498 nonsynonymous SNV 0.740 3 23 hm5C_associated_SNPs_63106 0 0 0 0 1 HABP4 chr9:99250556 5'GT 99250556 Upstream 59bp
chr11 128781258 128781258 1 + C T COAD 128781256 + 128781236 128781276 41 AGAAGATTCCAAAACAGGCCCGCGATTATGTCCCCATTGCC AGAAGATTCCAAAACAGGCCCGTGATTATGTCCCCATTGCC < 41bp 0.784523149768197 0.527585187908043 0.34171042 0.32001117 prediction 0.513875923720307 Functional Loss - KCNJ5 ENSG00000120457 CDS Human protein_coding chr11:128781256 chr11:128781258 synonymous SNV . 0 23 hm5C_associated_SNPs_63107 0 0 0 0 1 KCNJ5 chr11:128781159 3'AG 128781159 Downstream 100bp
chr1 43815030 43815030 1 + G T UCEC 43815028 + 43815008 43815048 41 TGGCAGTTTCCTGCACACTACAGGTACCGCCCCCGCCAGGC TGGCAGTTTCCTGCACACTACATGTACCGCCCCCGCCAGGC < 41bp 0.756935663772162 0.404938499785864 0.8271146 0.20501351 prediction 0.513871327544323 Functional Loss - MPL ENSG00000117400 CDS Human protein_coding chr1:43815028 chr1:43815030 nonsynonymous SNV 0.934 4 23 hm5C_associated_SNPs_63108 0 0 0 0 2 MPL chr1:43814934 3'AG 43814934 Downstream 97bp
chr1 43815030 43815030 1 + G T UCEC 43815028 + 43815008 43815048 41 TGGCAGTTTCCTGCACACTACAGGTACCGCCCCCGCCAGGC TGGCAGTTTCCTGCACACTACATGTACCGCCCCCGCCAGGC < 41bp 0.756935663772162 0.404938499785864 0.8271146 0.20501351 prediction 0.513871327544323 Functional Loss - MPL ENSG00000117400 CDS Human protein_coding chr1:43815028 chr1:43815030 nonsynonymous SNV 0.934 4 23 hm5C_associated_SNPs_63108 0 0 0 0 2 MPL chr1:43815030 5'GT 43815030 Upstream 1bp
chr19 40480313 40480313 1 + C T COAD 40480311 + 40480291 40480331 41 CACTGGTGGACGTGCTGCCCCCCGAAGCCGACAGCAGCATC CACTGGTGGACGTGCTGCCCCCTGAAGCCGACAGCAGCATC < 41bp 0.804202308455172 0.547267150878102 0.041030705 0.12159288 prediction 0.513870315154141 Functional Loss - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40480311 chr19:40480313 synonymous SNV . 0 23 hm5C_associated_SNPs_63109 0 0 1 0 1 PSMC4 chr19:40480347 5'GT 40480347 Upstream 35bp
chr6 160831795 160831795 1 + C T SKCM 160831793 + 160831773 160831813 41 GTCTCCCCGTTGGCTGATTACTCGGAAGAAAGGAGATAAAG GTCTCCCCGTTGGCTGATTACTTGGAAGAAAGGAGATAAAG < 41bp 0.820890518694159 0.563957491945882 0.11940879 0.14310575 prediction 0.513866053496555 Functional Loss - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160831793 chr6:160831795 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_63111 0 0 1 0 1 SLC22A3 chr6:160831878 5'GT 160831878 Upstream 84bp
chr20 62641574 62641574 1 + C T UCEC 62641572 + 62641552 62641592 41 GCCCTCGAGCATGTTCCAAACTCGGTTCGCTTGTGGAAAGC GCCCTCGAGCATGTTCCAAACTTGGTTCGCTTGTGGAAAGC < 41bp 0.809813139667382 0.552896739985889 0.27002093 0.21061459 prediction 0.513832799362986 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62641572 chr20:62641574 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_63113 0 0 1 0 2 PRPF6 chr20:62641553 3'AG 62641553 Downstream 22bp
chr20 62641574 62641574 1 + C T UCEC 62641572 + 62641552 62641592 41 GCCCTCGAGCATGTTCCAAACTCGGTTCGCTTGTGGAAAGC GCCCTCGAGCATGTTCCAAACTTGGTTCGCTTGTGGAAAGC < 41bp 0.809813139667382 0.552896739985889 0.27002093 0.21061459 prediction 0.513832799362986 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62641572 chr20:62641574 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_63113 0 0 1 0 2 PRPF6 chr20:62641671 5'GT 62641671 Upstream 98bp
chr17 25746877 25746877 1 + G T LUAD 25746875 + 25746855 25746895 41 GCACTGATCGCTTTGGGATTCTGCAGTGAGTCCTCTGTGCT GCACTGATCGCTTTGGGATTCTTCAGTGAGTCCTCTGTGCT < 41bp 0.756914597225634 0.438874548350785 0.8907399 0.888932 prediction 0.513829194451268 Functional Loss - TBC1D3P5 ENSG00000266433 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:25746875 chr17:25746877 . . 0 23 hm5C_associated_SNPs_63114 0 0 0 0 2 TBC1D3P5 chr17:25746796 3'AG 25746796 Downstream 82bp
chr17 25746877 25746877 1 + G T LUAD 25746875 + 25746855 25746895 41 GCACTGATCGCTTTGGGATTCTGCAGTGAGTCCTCTGTGCT GCACTGATCGCTTTGGGATTCTTCAGTGAGTCCTCTGTGCT < 41bp 0.756914597225634 0.438874548350785 0.8907399 0.888932 prediction 0.513829194451268 Functional Loss - TBC1D3P5 ENSG00000266433 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:25746875 chr17:25746877 . . 0 23 hm5C_associated_SNPs_63114 0 0 0 0 2 TBC1D3P5 chr17:25746879 5'GT 25746879 Upstream 3bp
chr6 160858112 160858112 1 + C T UCEC 160858110 + 160858090 160858130 41 CTCTATATAGACTTTTTCATCTCGGGCGTGGTGGAACTGCC CTCTATATAGACTTTTTCATCTTGGGCGTGGTGGAACTGCC < 41bp 0.818218818870071 0.561317822174339 0.24721447 0.12170154 prediction 0.513801993391463 Functional Loss - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160858110 chr6:160858112 nonsynonymous SNV 0.879 3 23 hm5C_associated_SNPs_63118 0 0 0 1 1 SLC22A3 chr6:160858029 3'AG 160858029 Downstream 84bp
chr20 17587722 17587722 1 + C T BLCA 17587720 + 17587700 17587740 41 AAGCAAATGGACCAGAAGATCTCAATCGGGCTTGTATTGCT AAGCAAATGGACCAGAAGATCTTAATCGGGCTTGTATTGCT < 41bp 0.756900425243897 0.476320612810571 0.053140253 0.0145435035 prediction 0.513800850487795 Functional Loss - DSTN ENSG00000125868 CDS Human protein_coding chr20:17587720 chr20:17587722 synonymous SNV . 0 23 hm5C_associated_SNPs_63119 0 0 1 0 1 DSTN chr20:17587682 3'AG 17587682 Downstream 41bp
chrX 35938098 35938098 1 + C T STAD 35938096 + 35938076 35938116 41 GCCGGGAGGGTGTACCGCCTCCCGATTACTGTGCATAATAT GCCGGGAGGGTGTACCGCCTCCTGATTACTGTGCATAATAT < 41bp 0.764050271958113 0.507169538419687 0.250435 0.22584727 prediction 0.513761467076852 Functional Loss - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35938096 chrX:35938098 nonsynonymous SNV 0.005 0 23 hm5C_associated_SNPs_63121 0 0 0 0 1 CFAP47 chrX:35938165 5'GT 35938165 Upstream 68bp
chrX 107301375 107301375 1 + G T LGG 107301372 + 107301352 107301392 41 ACACCACCACTGTGGCCTCCCGAGAACAGCTTTCCATCCAG ACACCACCACTGTGGCCTCCCGATAACAGCTTTCCATCCAG < 41bp 0.91296630657118 0.656085662577696 0.63569903 0.3392009 prediction 0.513761287986968 Functional Loss - VSIG1 ENSG00000101842 CDS Human protein_coding chrX:107301372 chrX:107301375 stopgain 0.003 0 24 hm5C_associated_SNPs_63122 0 0 0 0 1 VSIG1 chrX:107301431 5'GT 107301431 Upstream 57bp
chr15 40756212 40756212 1 + C T STAD 40756210 + 40756190 40756230 41 TCTCTGCCCTCTGGGAGAACCCCGAGTCAGGTACCTCTCCC TCTCTGCCCTCTGGGAGAACCCTGAGTCAGGTACCTCTCCC < 41bp 0.796715379267245 0.539839786799823 0.9008571 0.8177528 prediction 0.513751184934845 Functional Loss - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40756210 chr15:40756212 synonymous SNV . 0 23 hm5C_associated_SNPs_63123 0 0 1 0 1 BAHD1 chr15:40756219 5'GT 40756219 Upstream 8bp
chr12 75785088 75785088 1 + G T LUSC 75785086 + 75785066 75785106 41 ACGTGAACCTCCACAATGAGCTGCGGGGCGACGTCATTCCC ACGTGAACCTCCACAATGAGCTTCGGGGCGACGTCATTCCC < 41bp 0.862303665652337 0.605437575414948 0.5139917 0.29619277 prediction 0.513732180474779 Functional Loss - GLIPR1L2 ENSG00000180481 CDS Human protein_coding chr12:75785086 chr12:75785088 synonymous SNV . 0 23 hm5C_associated_SNPs_63127 0 0 0 0 1 GLIPR1L2 chr12:75785130 5'GT 75785130 Upstream 43bp
chr14 35482586 35482586 1 + C T LUAD 35482584 + 35482564 35482604 41 ATTGTTTATGTGATGGATGCCTCCATTGGGCAGGCTTGTGA ATTGTTTATGTGATGGATGCCTTCATTGGGCAGGCTTGTGA < 41bp 0.841954202298228 0.585103275247708 0.9556407 0.16958886 prediction 0.513701854101039 Functional Loss - SRP54 ENSG00000100883 CDS Human protein_coding chr14:35482584 chr14:35482586 nonsynonymous SNV 0.991 2 23 hm5C_associated_SNPs_63131 0 0 1 0 1 SRP54 chr14:35482552 3'AG 35482552 Downstream 35bp
chr2 11756809 11756809 1 + C T UCEC 11756807 + 11756787 11756827 41 AAAGGGAGAGGTCCCGCTCCCACGACTCAGCATCCTCATCC AAAGGGAGAGGTCCCGCTCCCATGACTCAGCATCCTCATCC < 41bp 0.783078510337663 0.526234389266579 0.06928775 0.080779165 prediction 0.513688242142169 Functional Loss - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11756807 chr2:11756809 synonymous SNV . 0 23 hm5C_associated_SNPs_63132 0 0 0 0 2 GREB1 chr2:11756757 3'AG 11756757 Downstream 53bp
chr2 11756809 11756809 1 + C T UCEC 11756807 + 11756787 11756827 41 AAAGGGAGAGGTCCCGCTCCCACGACTCAGCATCCTCATCC AAAGGGAGAGGTCCCGCTCCCATGACTCAGCATCCTCATCC < 41bp 0.783078510337663 0.526234389266579 0.06928775 0.080779165 prediction 0.513688242142169 Functional Loss - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11756807 chr2:11756809 synonymous SNV . 0 23 hm5C_associated_SNPs_63132 0 0 0 0 2 GREB1 chr2:11756846 5'GT 11756846 Upstream 38bp
chr11 120096498 120096498 1 + C T LUSC 120096496 + 120096476 120096516 41 CCAGTGAGGCCATGGCCAAGCTCCGGCAGGTAAGTGCCCCA CCAGTGAGGCCATGGCCAAGCTTCGGCAGGTAAGTGCCCCA < 41bp 0.775866389997718 0.519036999497211 0.30726147 0.22377038 prediction 0.513658781001012 Functional Loss - OAF ENSG00000184232 CDS Human protein_coding chr11:120096496 chr11:120096498 synonymous SNV . 0 23 hm5C_associated_SNPs_63136 0 0 1 0 1 OAF chr11:120096504 5'GT 120096504 Upstream 7bp
chr17 72791704 72791704 1 + C T SKCM 72791702 + 72791682 72791722 41 TCCTGCGGTGTGGAAGCAGACACCAAATACAATGACACTGA TCCTGCGGTGTGGAAGCAGACATCAAATACAATGACACTGA < 41bp 0.816909106799497 0.560089160668299 0.14576799 0.09201607 prediction 0.513639892262395 Functional Loss - TMEM104 ENSG00000109066 CDS Human protein_coding chr17:72791702 chr17:72791704 nonsynonymous SNV 0.712 0 23 hm5C_associated_SNPs_63137 0 0 1 0 2 TMEM104 chr17:72791663 3'AG 72791663 Downstream 42bp
chr17 72791704 72791704 1 + C T SKCM 72791702 + 72791682 72791722 41 TCCTGCGGTGTGGAAGCAGACACCAAATACAATGACACTGA TCCTGCGGTGTGGAAGCAGACATCAAATACAATGACACTGA < 41bp 0.816909106799497 0.560089160668299 0.14576799 0.09201607 prediction 0.513639892262395 Functional Loss - TMEM104 ENSG00000109066 CDS Human protein_coding chr17:72791702 chr17:72791704 nonsynonymous SNV 0.712 0 23 hm5C_associated_SNPs_63137 0 0 1 0 2 TMEM104 chr17:72791771 5'GT 72791771 Upstream 68bp
chr7 65160093 65160093 1 + A T HNSC 65160089 + 65160069 65160109 41 TTGAAAGAGTGTATAGTCTTCAGCACTTGGACCCTCAGGGA TTGAAAGAGTGTATAGTCTTCAGCTCTTGGACCCTCAGGGA < 41bp 0.841367885533392 0.584550173772051 0.47566602 0.387854 prediction 0.513635423522683 Functional Loss - INTS4P2 ENSG00000232270 ncRNA_exonic Human other chr7:65160089 chr7:65160093 . . 0 25 hm5C_associated_SNPs_63138 0 0 0 2 1 INTS4P2 chr7:65160138 5'GT 65160138 Upstream 46bp
chr3 9754512 9754512 1 + C T ACC 9754510 + 9754490 9754530 41 TACAGGAGCAATGAGGATGGCACGTGAGTCACTGCCATCAG TACAGGAGCAATGAGGATGGCATGTGAGTCACTGCCATCAG < 41bp 0.764996950438066 0.50818042975299 0.85217786 0.76412827 prediction 0.513633041370154 Functional Loss - CPNE9 ENSG00000144550 CDS Human protein_coding chr3:9754510 chr3:9754512 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_63139 0 0 0 0 1 CPNE9 chr3:9754512 5'GT 9754512 Upstream 1bp
chrX 55757893 55757893 1 + C T COAD 55757891 + 55757871 55757911 41 ATGTCTTTGATGTGGAGAGCCGCGAACTGGAAAAGGACATG ATGTCTTTGATGTGGAGAGCCGTGAACTGGAAAAGGACATG < 41bp 0.820836981128399 0.564021099680913 0.13104653 0.11885953 prediction 0.513631762894971 Functional Loss - RRAGB ENSG00000083750 CDS Human protein_coding chrX:55757891 chrX:55757893 synonymous SNV . 0 23 hm5C_associated_SNPs_63140 0 0 1 0 1 RRAGB chrX:55757797 3'AG 55757797 Downstream 97bp
chr7 75612939 75612939 1 + C T HNSC 75612937 + 75612917 75612957 41 ATGCACCTGGAATTGGACATCTCGGACTCCAAAATCAGGTA ATGCACCTGGAATTGGACATCTTGGACTCCAAAATCAGGTA < 41bp 0.791475933266147 0.534661269843003 0.251225 0.033901423 prediction 0.513629326846289 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75612937 chr7:75612939 nonsynonymous SNV 0.709 3 23 hm5C_associated_SNPs_63142 0 0 1 0 1 POR chr7:75612954 5'GT 75612954 Upstream 16bp
chr12 56619181 56619181 1 + G T GBM 56619179 + 56619159 56619199 41 CGAGTGACCAAGACAAAGGACGGGCATGAGGTTCGGACCTG CGAGTGACCAAGACAAAGGACGTGCATGAGGTTCGGACCTG < 41bp 0.756814002052857 0.416923339886773 0.33120733 0.091738105 prediction 0.513628004105714 Functional Loss - NABP2 ENSG00000139579 CDS Human protein_coding chr12:56619179 chr12:56619181 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_63143 0 0 1 0 1 NABP2 chr12:56619157 3'AG 56619157 Downstream 25bp
chr7 117307016 117307016 1 + G C BLCA 117307015 + 117306995 117307035 41 TCCATCCAGAAACTGCTGAACGAGAGGAGCCTCTTCCGGCA TCCATCCAGAAACTGCTGAACCAGAGGAGCCTCTTCCGGCA < 41bp 0.837128483950721 0.580322516278893 0.9208814 0.9180479 prediction 0.513611935343656 Functional Loss - CFTR ENSG00000001626 CDS Human protein_coding chr7:117307015 chr7:117307016 nonsynonymous SNV 0.870 5 22 hm5C_associated_SNPs_63144 0 0 0 0 1 CFTR chr7:117306962 3'AG 117306962 Downstream 55bp
chr5 50683546 50683546 1 + C T BLCA 50683544 + 50683524 50683564 41 GTCTAGGCGCTGGCGACCCGCTCAGTCCCCTGCATCCAGCG GTCTAGGCGCTGGCGACCCGCTTAGTCCCCTGCATCCAGCG < 41bp 0.756797857795158 0.492685457437687 0.32297704 0.27051517 prediction 0.513595715590316 Functional Loss - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50683544 chr5:50683546 synonymous SNV . 0 23 hm5C_associated_SNPs_63146 0 0 0 0 1 ISL1 chr5:50683583 5'GT 50683583 Upstream 38bp
chr4 71346569 71346569 1 + C T SKCM 71346567 + 71346547 71346587 41 TACGTCACAGAAGGCATCATCACCAATCACCCAAATCTCAC TACGTCACAGAAGGCATCATCATCAATCACCCAAATCTCAC < 41bp 0.76042172511279 0.5036306273479 0.0527232 0.0552164 prediction 0.513582195529782 Functional Loss - MUC7 ENSG00000171195 CDS Human protein_coding chr4:71346567 chr4:71346569 synonymous SNV . 0 23 hm5C_associated_SNPs_63147 0 0 0 0 1 MUC7 chr4:71346516 3'AG 71346516 Downstream 54bp
chr14 68008656 68008656 1 + G T SARC 68008654 + 68008634 68008674 41 GCTGCCTGACCCTGGAAACTCAGCTTTTCCGGTTCCGCCTA GCTGCCTGACCCTGGAAACTCATCTTTTCCGGTTCCGCCTA < 41bp 0.756779024639909 0.412398013180696 0.35230926 0.078151226 prediction 0.513558049279819 Functional Loss - PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68008654 chr14:68008656 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_63152 0 0 0 0 1 PLEKHH1 chr14:68008710 5'GT 68008710 Upstream 55bp
chr2 3447586 3447586 1 + C T CESC 3447584 + 3447564 3447604 41 TTCTCGATGCGCATCTTGCACGCGGAGCTTCAGCAGTACCT TTCTCGATGCGCATCTTGCACGTGGAGCTTCAGCAGTACCT < 41bp 0.788631149645801 0.531856286909633 0.20177838 0.25355136 prediction 0.513549725472336 Functional Loss - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3447584 chr2:3447586 nonsynonymous SNV 0.812 4 23 hm5C_associated_SNPs_63154 0 0 1 0 2 TRAPPC12 chr2:3447550 3'AG 3447550 Downstream 37bp
chr2 3447586 3447586 1 + C T CESC 3447584 + 3447564 3447604 41 TTCTCGATGCGCATCTTGCACGCGGAGCTTCAGCAGTACCT TTCTCGATGCGCATCTTGCACGTGGAGCTTCAGCAGTACCT < 41bp 0.788631149645801 0.531856286909633 0.20177838 0.25355136 prediction 0.513549725472336 Functional Loss - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3447584 chr2:3447586 nonsynonymous SNV 0.812 4 23 hm5C_associated_SNPs_63154 0 0 1 0 2 TRAPPC12 chr2:3447662 5'GT 3447662 Upstream 77bp
chr1 234040849 234040849 1 + G T SARC 234040847 + 234040827 234040867 41 GGGATTCGAGAGTTTCCCAGCGGCGCACCCAGGGGCAAGAG GGGATTCGAGAGTTTCCCAGCGTCGCACCCAGGGGCAAGAG < 41bp 0.756766335714402 0.430779814148479 0.74582106 0.15811539 prediction 0.513532671428804 Functional Loss - SLC35F3 ENSG00000183780 CDS Human protein_coding chr1:234040847 chr1:234040849 nonsynonymous SNV 0.973 1 23 hm5C_associated_SNPs_63158 0 0 0 0 1 SLC35F3 chr1:234040876 5'GT 234040876 Upstream 28bp
chr2 27726437 27726437 1 + A C rs147073127 27726436 + 27726416 27726456 41 GACAAGTAGCAGAGCGGATGCAGAAAATGCAGGAGAAACAG GACAAGTAGCAGAGCGGATGCCGAAAATGCAGGAGAAACAG < 41bp 0.756765591341881 0.497631528223111 0.87279403 0.47637197 prediction 0.513531182683762 Functional Loss - GCKR ENSG00000084734 CDS Human protein_coding chr2:27726436 chr2:27726437 nonsynonymous SNV 0.965 0 22 hm5C_associated_SNPs_63159 0 0 1 0 2 GCKR chr2:27726381 3'AG 27726381 Downstream 57bp
chr2 27726437 27726437 1 + A C rs147073127 27726436 + 27726416 27726456 41 GACAAGTAGCAGAGCGGATGCAGAAAATGCAGGAGAAACAG GACAAGTAGCAGAGCGGATGCCGAAAATGCAGGAGAAACAG < 41bp 0.756765591341881 0.497631528223111 0.87279403 0.47637197 prediction 0.513531182683762 Functional Loss - GCKR ENSG00000084734 CDS Human protein_coding chr2:27726436 chr2:27726437 nonsynonymous SNV 0.965 0 22 hm5C_associated_SNPs_63159 0 0 1 0 2 GCKR chr2:27726486 5'GT 27726486 Upstream 50bp
chr18 29617199 29617199 1 + A C UCEC 29617198 + 29617178 29617218 41 TGTAGCCAAAAGAATGAAATCAGAGTATAAGAACTGCGCTG TGTAGCCAAAAGAATGAAATCCGAGTATAAGAACTGCGCTG < 41bp 0.770084392003224 0.513319245830224 0.78256637 0.39029622 prediction 0.513530292345999 Functional Loss - RNF125 ENSG00000101695 CDS Human protein_coding chr18:29617198 chr18:29617199 synonymous SNV . 0 22 hm5C_associated_SNPs_63160 0 0 1 0 1 RNF125 chr18:29617232 5'GT 29617232 Upstream 34bp
chr17 38126781 38126781 1 + G T ESCA 38126778 + 38126758 38126798 41 TCCTGAAGGAGATGCAAGATCAAGGGGAGAACCTGTATGTG TCCTGAAGGAGATGCAAGATCAATGGGAGAACCTGTATGTG < 41bp 0.921797128291009 0.66504985921162 0.861264 0.3429484 prediction 0.513494538158778 Functional Loss - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38126778 chr17:38126781 nonsynonymous SNV 0.502 4 24 hm5C_associated_SNPs_63163 0 0 0 0 1 GSDMA chr17:38126735 3'AG 38126735 Downstream 47bp
chr17 58506739 58506739 1 + C T SKCM 58506737 + 58506717 58506757 41 TGGCAGGTGACATTCTGCGCCTCGGATGCGCCGGAGAGGTC TGGCAGGTGACATTCTGCGCCTTGGATGCGCCGGAGAGGTC < 41bp 0.772550897862528 0.515817250115833 0.19032389 0.2149106 prediction 0.513467295493389 Functional Loss - C17orf64 ENSG00000141371 CDS Human protein_coding chr17:58506737 chr17:58506739 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_63167 0 0 0 0 1 C17orf64 chr17:58506723 3'AG 58506723 Downstream 17bp
chr11 61250258 61250258 1 + G T rs575487688 61250256 + 61250236 61250276 41 GGCTATGGGCGGGAGAAGCCCAGTGCGGGTCCCCCCACCAA GGCTATGGGCGGGAGAAGCCCATTGCGGGTCCCCCCACCAA < 41bp 0.887943570449166 0.631213591048732 0.53273207 0.2053377 prediction 0.513459958800868 Functional Loss - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61250256 chr11:61250258 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_63170 0 0 0 0 1 PPP1R32 chr11:61250280 5'GT 61250280 Upstream 23bp
chr15 64747223 64747223 1 + G C BLCA 64747219 + 64747199 64747239 41 AATTGGATTCCAAGATCCATCAAGGAGCAAAGAAGGGGTTA AATTGGATTCCAAGATCCATCAAGCAGCAAAGAAGGGGTTA < 41bp 0.775898871177908 0.519170950377572 0.76742846 0.30668858 prediction 0.513455841600671 Functional Loss - TRIP4 ENSG00000103671 CDS Human protein_coding chr15:64747219 chr15:64747223 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_63171 0 0 1 0 1 TRIP4 chr15:64747196 3'AG 64747196 Downstream 28bp
chr3 38354509 38354509 1 + C T COAD 38354507 + 38354487 38354527 41 CAGGATTCTCCCGGAGTCCCCGCGGTGGCTGATGATGAAAG CAGGATTCTCCCGGAGTCCCCGTGGTGGCTGATGATGAAAG < 41bp 0.759946072700528 0.503225649168834 0.66587853 0.45643565 prediction 0.513440847063389 Functional Loss - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38354507 chr3:38354509 nonsynonymous SNV 0.253 4 23 hm5C_associated_SNPs_63173 0 0 0 2 1 SLC22A14 chr3:38354490 3'AG 38354490 Downstream 20bp
chr17 1679937 1679937 1 + G T BLCA 1679934 + 1679914 1679954 41 GCCTCACCTCCGAGTTCATTCATGACATAGACCGAGAACTG GCCTCACCTCCGAGTTCATTCATTACATAGACCGAGAACTG < 41bp 0.756707254574637 0.372200311499598 0.16869578 0.061071724 prediction 0.513414509149274 Functional Loss - SERPINF1 ENSG00000132386 CDS Human protein_coding chr17:1679934 chr17:1679937 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_63174 0 0 1 0 1 SERPINF1 chr17:1680036 5'GT 1680036 Upstream 100bp
chr19 50885782 50885782 1 + G T LUSC 50885780 + 50885760 50885800 41 CACGCTGAGCTCTGTGCACTCGGAGCAGGTCTTCGCCTTGC CACGCTGAGCTCTGTGCACTCGTAGCAGGTCTTCGCCTTGC < 41bp 0.874821387952491 0.618123032425344 0.9245223 0.54026634 prediction 0.513396711054294 Functional Loss - NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50885780 chr19:50885782 stopgain 1.000 0 23 hm5C_associated_SNPs_63178 0 0 1 0 1 NR1H2 chr19:50885713 3'AG 50885713 Downstream 70bp
chrX 7066097 7066097 1 + G T UCEC 7066095 + 7066075 7066115 41 GCGGCTGCACACTACCCACCCAGAAGAAGTCCGTCCATGTC GCGGCTGCACACTACCCACCCATAAGAAGTCCGTCCATGTC < 41bp 0.756690929490188 0.414220710994057 0.81194353 0.019546777 prediction 0.513381858980376 Functional Loss - PUDP ENSG00000130021 CDS Human protein_coding chrX:7066095 chrX:7066097 nonsynonymous SNV 0.972 2 23 hm5C_associated_SNPs_63179 0 0 0 1 1 PUDP chrX:7066124 5'GT 7066124 Upstream 28bp
chr2 173451074 173451074 1 + T C rs36014095 173451073 + 173451053 173451093 41 TTTCAACTACATGTATTCAACTGCACCAAGACCTCGTGTTG TTTCAACTACATGTATTCAACCGCACCAAGACCTCGTGTTG < 41bp 0.756679911147231 0.497318854650057 0.03684196 0.03725809 prediction 0.513359822294463 Functional Loss - PDK1 ENSG00000152256 CDS Human protein_coding chr2:173451073 chr2:173451074 synonymous SNV . 0 22 hm5C_associated_SNPs_63182 0 0 1 0 2 PDK1 chr2:173451006 3'AG 173451006 Downstream 69bp
chr2 173451074 173451074 1 + T C rs36014095 173451073 + 173451053 173451093 41 TTTCAACTACATGTATTCAACTGCACCAAGACCTCGTGTTG TTTCAACTACATGTATTCAACCGCACCAAGACCTCGTGTTG < 41bp 0.756679911147231 0.497318854650057 0.03684196 0.03725809 prediction 0.513359822294463 Functional Loss - PDK1 ENSG00000152256 CDS Human protein_coding chr2:173451073 chr2:173451074 synonymous SNV . 0 22 hm5C_associated_SNPs_63182 0 0 1 0 2 PDK1 chr2:173451116 5'GT 173451116 Upstream 43bp
chr11 212645 212645 1 + C T GBM 212643 + 212623 212663 41 CCCTCTGCGGGATGTGAGGACACGGCCTGAGGTTGGGGAGA CCCTCTGCGGGATGTGAGGACATGGCCTGAGGTTGGGGAGA < 41bp 0.771407735212137 0.514735734330484 0.19279325 0.24678305 prediction 0.513344001763305 Functional Loss - RIC8A ENSG00000177963 CDS Human protein_coding chr11:212643 chr11:212645 nonsynonymous SNV 0.974 4 23 hm5C_associated_SNPs_63184 0 0 1 0 2 RIC8A chr11:212597 3'AG 212597 Downstream 49bp
chr11 212645 212645 1 + C T GBM 212643 + 212623 212663 41 CCCTCTGCGGGATGTGAGGACACGGCCTGAGGTTGGGGAGA CCCTCTGCGGGATGTGAGGACATGGCCTGAGGTTGGGGAGA < 41bp 0.771407735212137 0.514735734330484 0.19279325 0.24678305 prediction 0.513344001763305 Functional Loss - RIC8A ENSG00000177963 CDS Human protein_coding chr11:212643 chr11:212645 nonsynonymous SNV 0.974 4 23 hm5C_associated_SNPs_63184 0 0 1 0 2 RIC8A chr11:212615 3'AG 212615 Downstream 31bp
chr2 108872086 108872086 1 + G T UCEC 108872084 + 108872064 108872104 41 GTGTCCTACTACCACTTTCACAGGATGGCTTCCTTTATGCC GTGTCCTACTACCACTTTCACATGATGGCTTCCTTTATGCC < 41bp 0.87999668390674 0.623346125265592 0.93100893 0.47417274 prediction 0.513301117282296 Functional Loss - SULT1C3 ENSG00000196228 CDS Human protein_coding chr2:108872084 chr2:108872086 nonsynonymous SNV 0.004 4 23 hm5C_associated_SNPs_63190 0 0 0 0 2 SULT1C3 chr2:108872028 3'AG 108872028 Downstream 59bp
chr2 108872086 108872086 1 + G T UCEC 108872084 + 108872064 108872104 41 GTGTCCTACTACCACTTTCACAGGATGGCTTCCTTTATGCC GTGTCCTACTACCACTTTCACATGATGGCTTCCTTTATGCC < 41bp 0.87999668390674 0.623346125265592 0.93100893 0.47417274 prediction 0.513301117282296 Functional Loss - SULT1C3 ENSG00000196228 CDS Human protein_coding chr2:108872084 chr2:108872086 nonsynonymous SNV 0.004 4 23 hm5C_associated_SNPs_63190 0 0 0 0 2 SULT1C3 chr2:108872154 5'GT 108872154 Upstream 69bp
chr2 219483332 219483332 1 + A C STAD 219483328 + 219483308 219483348 41 TCTCTGATGTGGAGACAATACGTAATGGCCATGATTCCGAG TCTCTGATGTGGAGACAATACGTACTGGCCATGATTCCGAG < 41bp 0.756626636257959 0.340498632058986 0.1743581 0.09502259 prediction 0.513253272515919 Functional Loss - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219483328 chr2:219483332 nonsynonymous SNV 0.687 0 25 hm5C_associated_SNPs_63192 0 0 0 0 1 PLCD4 chr2:219483302 3'AG 219483302 Downstream 31bp
chr4 128688324 128688324 1 + G T COAD 128688322 + 128688302 128688342 41 AAGGGTTTGGTGTTTCAGTACAGGGCATCATTGTGTACCGA AAGGGTTTGGTGTTTCAGTACATGGCATCATTGTGTACCGA < 41bp 0.756626301839371 0.42021785401533 0.28598046 0.10987118 prediction 0.513252603678742 Functional Loss - SLC25A31 ENSG00000151475 CDS Human protein_coding chr4:128688322 chr4:128688324 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_63193 0 0 0 0 1 SLC25A31 chr4:128688375 5'GT 128688375 Upstream 52bp
chr1 55279600 55279600 1 + T C UCEC 55279599 + 55279579 55279619 41 TCCCCGAAACCCGAAAACCCCTACAGAGAGGATTTACTGGG TCCCCGAAACCCGAAAACCCCCACAGAGAGGATTTACTGGG < 41bp 0.756625457847882 0.496892244997549 0.41982448 0.060204923 prediction 0.513250915695764 Functional Loss - LEXM ENSG00000162398 CDS Human protein_coding chr1:55279599 chr1:55279600 synonymous SNV . 0 22 hm5C_associated_SNPs_63194 0 0 0 0 1 LEXM chr1:55279648 5'GT 55279648 Upstream 49bp
chr11 73670671 73670671 1 + A T UCEC 73670667 + 73670647 73670687 41 GCAAACCTGAAAAGGTGTTCCACGAGTTCTTTGGTGGAAAC GCAAACCTGAAAAGGTGTTCCACGTGTTCTTTGGTGGAAAC < 41bp 0.868355791441651 0.61174104018566 0.4639162 0.37433165 prediction 0.513229502511983 Functional Loss - DNAJB13 ENSG00000187726 CDS Human protein_coding chr11:73670667 chr11:73670671 nonsynonymous SNV 0.855 2 25 hm5C_associated_SNPs_63196 0 0 0 0 1 DNAJB13 chr11:73670700 5'GT 73670700 Upstream 30bp
chr15 92647677 92647677 1 + C T SKCM 92647675 + 92647655 92647695 41 GAAAGCGAGCAGGCCATGCTCTCCGAAAGAGAATACGAGAG GAAAGCGAGCAGGCCATGCTCTTCGAAAGAGAATACGAGAG < 41bp 0.756613364188116 0.482071682247208 0.34647813 0.24987131 prediction 0.513226728376232 Functional Loss - SLCO3A1 ENSG00000176463 CDS Human protein_coding chr15:92647675 chr15:92647677 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_63198 0 0 0 0 1 SLCO3A1 chr15:92647772 5'GT 92647772 Upstream 96bp
chr12 75763878 75763878 1 + G T LIHC 75763876 + 75763856 75763896 41 TTTTGACAGAAAATCCATTTCTGAAGCCAACGGGGAGAGCA TTTTGACAGAAAATCCATTTCTTAAGCCAACGGGGAGAGCA < 41bp 0.849723133078098 0.593114749669405 0.28627294 0.1298267 prediction 0.513216766817385 Functional Loss - GLIPR1L1 ENSG00000173401 CDS Human protein_coding chr12:75763876 chr12:75763878 synonymous SNV 0.007 0 23 hm5C_associated_SNPs_63199 0 0 0 0 1 GLIPR1L1 chr12:75763865 3'AG 75763865 Downstream 14bp
chr7 156746931 156746931 1 + G T UCEC 156746929 + 156746909 156746949 41 GTCACTGCCTCGGCCATGCCCAGCAGACTGATGATGGAGCA GTCACTGCCTCGGCCATGCCCATCAGACTGATGATGGAGCA < 41bp 0.885179182638469 0.628574599036666 0.40764478 0.1814264 prediction 0.513209167203606 Functional Loss - NOM1 ENSG00000146909 CDS Human protein_coding chr7:156746929 chr7:156746931 nonsynonymous SNV 0.854 1 23 hm5C_associated_SNPs_63200 0 0 1 0 1 NOM1 chr7:156746992 5'GT 156746992 Upstream 62bp
chr5 126783372 126783372 1 + C T UCEC 126783370 + 126783350 126783390 41 AACAGGGACAGGATGACTGTCACGAAGGTGAGAGGAATTGG AACAGGGACAGGATGACTGTCATGAAGGTGAGAGGAATTGG < 41bp 0.787894487054552 0.531291508407112 0.28141302 0.2711861 prediction 0.51320595729488 Functional Loss - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126783370 chr5:126783372 nonsynonymous SNV 0.105 1 23 hm5C_associated_SNPs_63202 0 0 0 0 1 MEGF10 chr5:126783376 5'GT 126783376 Upstream 5bp
chr15 43627977 43627977 1 + C T STAD 43627975 + 43627955 43627995 41 AGAAGCCAGATCTTAAAATCCACGATCAGATGACTGTGATT AGAAGCCAGATCTTAAAATCCATGATCAGATGACTGTGATT < 41bp 0.809635932613088 0.553041837038486 0.01708594 0.017371178 prediction 0.513188191149202 Functional Loss - ADAL ENSG00000168803 CDS Human protein_coding chr15:43627975 chr15:43627977 synonymous SNV . 0 23 hm5C_associated_SNPs_63203 0 0 1 0 1 ADAL chr15:43627894 3'AG 43627894 Downstream 84bp
chrX 103411570 103411570 1 + G C LUAD 103411566 + 103411546 103411586 41 CTCGCGGGGTGGGCACCTGCCCGAGCGAGGAGCCGGGCTGC CTCGCGGGGTGGGCACCTGCCCGACCGAGGAGCCGGGCTGC < 41bp 0.797168946397012 0.54058066258349 0.5780346 0.06352556 prediction 0.513176567627043 Functional Loss - FAM199X ENSG00000123575 CDS Human protein_coding chrX:103411566 chrX:103411570 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_63207 0 0 1 0 1 FAM199X chrX:103411663 5'GT 103411663 Upstream 94bp
chr9 131233667 131233667 1 + C T COAD 131233665 + 131233645 131233685 41 AAGAGCTGGAGGAGGTGGCCCACGAACTGGCTGAGACTGAG AAGAGCTGGAGGAGGTGGCCCATGAACTGGCTGAGACTGAG < 41bp 0.765901512875002 0.509319269453801 0.10034785 0.2132506 prediction 0.513164486842401 Functional Loss - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131233665 chr9:131233667 synonymous SNV . 0 23 hm5C_associated_SNPs_63208 0 0 1 0 2 ODF2 chr9:131233587 3'AG 131233587 Downstream 81bp
chr9 131233667 131233667 1 + C T COAD 131233665 + 131233645 131233685 41 AAGAGCTGGAGGAGGTGGCCCACGAACTGGCTGAGACTGAG AAGAGCTGGAGGAGGTGGCCCATGAACTGGCTGAGACTGAG < 41bp 0.765901512875002 0.509319269453801 0.10034785 0.2132506 prediction 0.513164486842401 Functional Loss - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131233665 chr9:131233667 synonymous SNV . 0 23 hm5C_associated_SNPs_63208 0 0 1 0 2 ODF2 chr9:131233747 5'GT 131233747 Upstream 81bp
chr4 25419839 25419839 1 + C T COAD 25419837 + 25419817 25419857 41 ACATAGATGATGAATGGGAGCTCGATGAGTCTTCAGATGAA ACATAGATGATGAATGGGAGCTTGATGAGTCTTCAGATGAA < 41bp 0.799339170222178 0.542757137976108 0.15933126 0.21726507 prediction 0.51316406449214 Functional Loss - ANAPC4 ENSG00000053900 CDS Human protein_coding chr4:25419837 chr4:25419839 synonymous SNV . 0 23 hm5C_associated_SNPs_63209 0 0 1 0 1 ANAPC4 chr4:25419777 3'AG 25419777 Downstream 63bp
chr8 2020508 2020508 1 + G C KIRP 2020507 + 2020487 2020527 41 GTCACCTTCAGGAGGGAAGGCGAGACGGTCACTCTCAAGTG GTCACCTTCAGGAGGGAAGGCCAGACGGTCACTCTCAAGTG < 41bp 0.756570130742111 0.445254850015015 0.8838792 0.6728442 prediction 0.513140261484222 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2020507 chr8:2020508 nonsynonymous SNV 0.680 1 22 hm5C_associated_SNPs_63214 0 0 0 0 2 MYOM2 chr8:2020425 3'AG 2020425 Downstream 84bp
chr8 2020508 2020508 1 + G C KIRP 2020507 + 2020487 2020527 41 GTCACCTTCAGGAGGGAAGGCGAGACGGTCACTCTCAAGTG GTCACCTTCAGGAGGGAAGGCCAGACGGTCACTCTCAAGTG < 41bp 0.756570130742111 0.445254850015015 0.8838792 0.6728442 prediction 0.513140261484222 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2020507 chr8:2020508 nonsynonymous SNV 0.680 1 22 hm5C_associated_SNPs_63214 0 0 0 0 2 MYOM2 chr8:2020589 5'GT 2020589 Upstream 82bp
chr1 160141540 160141540 1 + G T BRCA 160141537 + 160141517 160141557 41 TGTGAGCAAGTGTCGCAGTGCAGGAATTAAGGTAAATACTT TGTGAGCAAGTGTCGCAGTGCAGTAATTAAGGTAAATACTT < 41bp 0.75656151822476 0.36877815103092 0.25698 0.17778128 prediction 0.513123036449521 Functional Loss - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160141537 chr1:160141540 nonsynonymous SNV 0.933 5 24 hm5C_associated_SNPs_63216 0 0 0 1 1 ATP1A4 chr1:160141547 5'GT 160141547 Upstream 8bp
chr18 77221353 77221353 1 + A T COAD 77221349 + 77221329 77221369 41 AGATGGAAGCGAAAACTGACCGGGACCTGTGCAAGCCGGTG AGATGGAAGCGAAAACTGACCGGGTCCTGTGCAAGCCGGTG < 41bp 0.75655728945157 0.453765988958067 0.36876643 0.4907597 prediction 0.513114578903141 Functional Loss - NFATC1 ENSG00000131196 CDS Human protein_coding chr18:77221349 chr18:77221353 nonsynonymous SNV 0.325 2 25 hm5C_associated_SNPs_63217 0 0 0 0 2 NFATC1 chr18:77221311 3'AG 77221311 Downstream 43bp
chr18 77221353 77221353 1 + A T COAD 77221349 + 77221329 77221369 41 AGATGGAAGCGAAAACTGACCGGGACCTGTGCAAGCCGGTG AGATGGAAGCGAAAACTGACCGGGTCCTGTGCAAGCCGGTG < 41bp 0.75655728945157 0.453765988958067 0.36876643 0.4907597 prediction 0.513114578903141 Functional Loss - NFATC1 ENSG00000131196 CDS Human protein_coding chr18:77221349 chr18:77221353 nonsynonymous SNV 0.325 2 25 hm5C_associated_SNPs_63217 0 0 0 0 2 NFATC1 chr18:77221366 5'GT 77221366 Upstream 14bp
chr19 38778554 38778554 1 + G T SARC 38778552 + 38778532 38778572 41 CCTGGCCACCAGCAGGAATGCAGCGGATTCCTCTGTCCCAA CCTGGCCACCAGCAGGAATGCATCGGATTCCTCTGTCCCAA < 41bp 0.892258141287394 0.635702145773721 0.83495355 0.48151562 prediction 0.513111991027345 Functional Loss - SPINT2 ENSG00000167642 CDS Human protein_coding chr19:38778552 chr19:38778554 nonsynonymous SNV 0.871 0 23 hm5C_associated_SNPs_63218 0 0 0 0 2 SPINT2 chr19:38778516 3'AG 38778516 Downstream 39bp
chr19 38778554 38778554 1 + G T SARC 38778552 + 38778532 38778572 41 CCTGGCCACCAGCAGGAATGCAGCGGATTCCTCTGTCCCAA CCTGGCCACCAGCAGGAATGCATCGGATTCCTCTGTCCCAA < 41bp 0.892258141287394 0.635702145773721 0.83495355 0.48151562 prediction 0.513111991027345 Functional Loss - SPINT2 ENSG00000167642 CDS Human protein_coding chr19:38778552 chr19:38778554 nonsynonymous SNV 0.871 0 23 hm5C_associated_SNPs_63218 0 0 0 0 2 SPINT2 chr19:38778575 5'GT 38778575 Upstream 22bp
chr4 110908942 110908942 1 + G T GBM 110908939 + 110908919 110908959 41 TGTGGGATGCAGCATGTATGCTCGGTGTATTTCAGAGGGAG TGTGGGATGCAGCATGTATGCTCTGTGTATTTCAGAGGGAG < 41bp 0.75655294430447 0.371523987356747 0.3054753 0.14001498 prediction 0.513105888608941 Functional Loss - EGF ENSG00000138798 CDS Human protein_coding chr4:110908939 chr4:110908942 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_63220 0 0 0 0 2 EGF chr4:110908900 3'AG 110908900 Downstream 43bp
chr4 110908942 110908942 1 + G T GBM 110908939 + 110908919 110908959 41 TGTGGGATGCAGCATGTATGCTCGGTGTATTTCAGAGGGAG TGTGGGATGCAGCATGTATGCTCTGTGTATTTCAGAGGGAG < 41bp 0.75655294430447 0.371523987356747 0.3054753 0.14001498 prediction 0.513105888608941 Functional Loss - EGF ENSG00000138798 CDS Human protein_coding chr4:110908939 chr4:110908942 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_63220 0 0 0 0 2 EGF chr4:110909016 5'GT 110909016 Upstream 75bp
chr4 110902111 110902111 1 + A T rs11569017 110902107 + 110902087 110902127 41 ATGGGAAAACGTGTCTGGCTCTGGATGGTCATCAGCTGTTG ATGGGAAAACGTGTCTGGCTCTGGTTGGTCATCAGCTGTTG < 41bp 0.862980764120708 0.606430265694939 0.34847444 0.14874083 prediction 0.513100996851539 Functional Loss - EGF ENSG00000138798 CDS Human protein_coding chr4:110902107 chr4:110902111 nonsynonymous SNV 0.170 2 25 hm5C_associated_SNPs_63221 1 0 0 0 1 EGF chr4:110902131 5'GT 110902131 Upstream 21bp
chr19 16982140 16982140 1 + C T LUSC 16982138 + 16982118 16982158 41 CGCAGTACGAGGACACCCTACGCGAGATGTTCACCATCCAT CGCAGTACGAGGACACCCTACGTGAGATGTTCACCATCCAT < 41bp 0.756542966588627 0.477656776729091 0.26500615 0.18869197 prediction 0.513085933177253 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16982138 chr19:16982140 synonymous SNV . 0 23 hm5C_associated_SNPs_63223 0 0 1 0 1 SIN3B chr19:16982209 5'GT 16982209 Upstream 70bp
chr20 29612334 29612334 1 + G T rs527831038 29612331 + 29612311 29612351 41 CTGGAAACAGGATAGACGGGCGGGTGACCCGTGGCCCCGTA CTGGAAACAGGATAGACGGGCGGTTGACCCGTGGCCCCGTA < 41bp 0.756539424794462 0.368293072607513 0.88333464 0.369336 prediction 0.513078849588924 Functional Loss - FRG1BP;FRG1DP ENSG00000149531 intronic Human unprocessed_pseudogene chr20:29612331 chr20:29612334 . . 0 24 hm5C_associated_SNPs_63224 0 0 1 0 1 FRG1BP;FRG1DP chr20:29612397 5'GT 29612397 Upstream 64bp
chr17 3379592 3379592 1 + G T LUAD 3379589 + 3379569 3379609 41 CTGAGATTCAGAGAACAGGGCTGGAGGTAAAACCATTTATT CTGAGATTCAGAGAACAGGGCTGTAGGTAAAACCATTTATT < 41bp 0.756532301495356 0.390343812557266 0.18988621 0.11563283 prediction 0.513064602990713 Functional Loss - ASPA ENSG00000108381 CDS Human protein_coding chr17:3379589 chr17:3379592 stopgain 0.998 1 24 hm5C_associated_SNPs_63225 0 0 0 0 1 ASPA chr17:3379689 5'GT 3379689 Upstream 98bp
chr5 78379147 78379147 1 + C T BLCA 78379145 + 78379125 78379165 41 GTGCAGCCTCTGGGGTTCCACGCGCCTGACTGTGGCAAAGA GTGCAGCCTCTGGGGTTCCACGTGCCTGACTGTGGCAAAGA < 41bp 0.789301631814912 0.532770655468402 0.3268635 0.66750836 prediction 0.51306195269302 Functional Loss - BHMT2 ENSG00000132840 CDS Human protein_coding chr5:78379145 chr5:78379147 nonsynonymous SNV 0.078 1 23 hm5C_associated_SNPs_63226 0 0 0 0 1 BHMT2 chr5:78379197 5'GT 78379197 Upstream 51bp
chr20 207987 207987 1 + G T UCEC 207985 + 207965 208005 41 GCTACAGTACCAGGTGAACACAGGTAATGTGGATTCCCAAG GCTACAGTACCAGGTGAACACATGTAATGTGGATTCCCAAG < 41bp 0.866853352373834 0.610335059889718 0.44087067 0.28425783 prediction 0.513036584968231 Functional Loss - DEFB129 ENSG00000125903 CDS Human protein_coding chr20:207985 chr20:207987 stopgain 0.972 0 23 hm5C_associated_SNPs_63230 0 0 0 0 1 DEFB129 chr20:207987 5'GT 207987 Upstream 1bp
chr20 42199368 42199368 1 + A C LUSC 42199367 + 42199347 42199387 41 CACTCCCTCAACATCATTTACAGGTGAGGCCTGCCTGTGGC CACTCCCTCAACATCATTTACCGGTGAGGCCTGCCTGTGGC < 41bp 0.78093336067369 0.524419670774436 0.4354547 0.2389107 prediction 0.513027379798508 Functional Loss - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42199367 chr20:42199368 synonymous SNV . 0 22 hm5C_associated_SNPs_63233 0 0 1 0 1 SGK2 chr20:42199369 5'GT 42199369 Upstream 2bp
chr20 21689954 21689954 1 + G T BLCA 21689952 + 21689932 21689972 41 GTGTACAGCGCCCCGGGCGGCGGCTACCTCGCCCCGGGCCC GTGTACAGCGCCCCGGGCGGCGTCTACCTCGCCCCGGGCCC < 41bp 0.756502092885286 0.391806089834105 0.89547145 0.38693747 prediction 0.513004185770573 Functional Loss - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21689952 chr20:21689954 nonsynonymous SNV 0.905 3 23 hm5C_associated_SNPs_63234 0 0 0 0 1 PAX1 chr20:21689860 3'AG 21689860 Downstream 95bp
chr16 90106791 90106791 1 + C T BLCA 90106789 + 90106769 90106809 41 AGAAGACAGGGTTCAAGAACCTCGTGCTAGAACGCAAGCTG AGAAGACAGGGTTCAAGAACCTTGTGCTAGAACGCAAGCTG < 41bp 0.786000184459495 0.529504127940179 0.39423418 0.34644645 prediction 0.512992113038634 Functional Loss - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90106789 chr16:90106791 synonymous SNV . 0 23 hm5C_associated_SNPs_63236 0 0 1 0 1 GAS8 chr16:90106708 3'AG 90106708 Downstream 84bp
chr3 50147061 50147061 1 + G C LUSC 50147057 + 50147037 50147077 41 CACAGCAGTGACCACCACCTCAGCGGCTGTAGTGTCCCAGA CACAGCAGTGACCACCACCTCAGCCGCTGTAGTGTCCCAGA < 41bp 0.75648953278677 0.47301620812458 0.42615137 0.23618934 prediction 0.51297906557354 Functional Loss - RBM5 ENSG00000003756 CDS Human protein_coding chr3:50147057 chr3:50147061 synonymous SNV . 0 25 hm5C_associated_SNPs_63238 0 0 1 0 2 RBM5 chr3:50147036 3'AG 50147036 Downstream 26bp
chr3 50147061 50147061 1 + G C LUSC 50147057 + 50147037 50147077 41 CACAGCAGTGACCACCACCTCAGCGGCTGTAGTGTCCCAGA CACAGCAGTGACCACCACCTCAGCCGCTGTAGTGTCCCAGA < 41bp 0.75648953278677 0.47301620812458 0.42615137 0.23618934 prediction 0.51297906557354 Functional Loss - RBM5 ENSG00000003756 CDS Human protein_coding chr3:50147057 chr3:50147061 synonymous SNV . 0 25 hm5C_associated_SNPs_63238 0 0 1 0 2 RBM5 chr3:50147121 5'GT 50147121 Upstream 61bp
chr12 104378584 104378584 1 + G T GBM 104378581 + 104378561 104378601 41 GTGCTCAGTTTCCTCGAGCCCAAGACAAAGTTCATTACTAC GTGCTCAGTTTCCTCGAGCCCAATACAAAGTTCATTACTAC < 41bp 0.756470684846947 0.383788116916428 0.32969606 0.1650973 prediction 0.512941369693894 Functional Loss - TDG ENSG00000139372 CDS Human protein_coding chr12:104378581 chr12:104378584 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_63243 0 0 1 0 1 TDG chr12:104378527 3'AG 104378527 Downstream 58bp
chr6 76623840 76623840 1 + A T LUAD 76623836 + 76623816 76623856 41 AGCGGGAGATTGAAATGAACCGACAGCAACGCTTCTTCCGC AGCGGGAGATTGAAATGAACCGACTGCAACGCTTCTTCCGC < 41bp 0.756469356784177 0.437879023567332 0.06689882 0.07979727 prediction 0.512938713568355 Functional Loss - MYO6 ENSG00000196586 CDS Human protein_coding chr6:76623836 chr6:76623840 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_63244 0 0 0 0 1 MYO6 chr6:76623780 3'AG 76623780 Downstream 61bp
chr1 244868943 244868943 1 + C T UCEC 244868941 + 244868921 244868961 41 CCCTTTCTACAGAGTTGCCTCCCGAAGGAGTGGCTCACGCC CCCTTTCTACAGAGTTGCCTCCTGAAGGAGTGGCTCACGCC < 41bp 0.793421903189095 0.536953644951968 0.32609984 0.09279421 prediction 0.512936516474254 Functional Loss - DESI2 ENSG00000121644 CDS Human protein_coding chr1:244868941 chr1:244868943 nonsynonymous SNV 0.938 3 23 hm5C_associated_SNPs_63245 0 0 1 0 1 DESI2 chr1:244868858 3'AG 244868858 Downstream 86bp
chr18 10540342 10540342 1 + G C HNSC 10540341 + 10540321 10540361 41 TTCAGAATGAAGAACGCTTACGACAGGCAGTTGAATTACTA TTCAGAATGAAGAACGCTTACCACAGGCAGTTGAATTACTA < 41bp 0.756462235330085 0.455203524856901 0.19687149 0.1622192 prediction 0.51292447066017 Functional Loss - NAPG ENSG00000134265 CDS Human protein_coding chr18:10540341 chr18:10540342 nonsynonymous SNV 0.987 4 22 hm5C_associated_SNPs_63246 0 0 1 0 2 NAPG chr18:10540326 3'AG 10540326 Downstream 17bp
chr18 10540342 10540342 1 + G C HNSC 10540341 + 10540321 10540361 41 TTCAGAATGAAGAACGCTTACGACAGGCAGTTGAATTACTA TTCAGAATGAAGAACGCTTACCACAGGCAGTTGAATTACTA < 41bp 0.756462235330085 0.455203524856901 0.19687149 0.1622192 prediction 0.51292447066017 Functional Loss - NAPG ENSG00000134265 CDS Human protein_coding chr18:10540341 chr18:10540342 nonsynonymous SNV 0.987 4 22 hm5C_associated_SNPs_63246 0 0 1 0 2 NAPG chr18:10540396 5'GT 10540396 Upstream 55bp
chr7 129950820 129950820 1 + G T STAD 129950817 + 129950797 129950837 41 GTCAAAAAGGCCCCAGATGCCGAGGAACTCGTGAGTCACAG GTCAAAAAGGCCCCAGATGCCGATGAACTCGTGAGTCACAG < 41bp 0.911505026063154 0.655047981546358 0.7048382 0.40290427 prediction 0.512914089033593 Functional Loss - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950817 chr7:129950820 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_63249 0 0 0 0 1 CPA4 chr7:129950826 5'GT 129950826 Upstream 7bp
chr4 164271496 164271496 1 + A C UCEC 164271492 + 164271472 164271512 41 AGAATAATACTGCTGCCACTCGGAATTCTGATTTCCCAGTC AGAATAATACTGCTGCCACTCGGACTTCTGATTTCCCAGTC < 41bp 0.908682036092819 0.652226742891555 0.88904774 0.8057064 prediction 0.512910586402529 Functional Loss - NPY5R ENSG00000164129 CDS Human protein_coding chr4:164271492 chr4:164271496 nonsynonymous SNV 0.095 1 25 hm5C_associated_SNPs_63251 0 0 0 0 1 NPY5R chr4:164271417 3'AG 164271417 Downstream 80bp
chr9 133957544 133957544 1 + G T HNSC 133957542 + 133957522 133957562 41 CCAGGACTCTGCTGGCTGATCTGGAAGGTACGTGAGTCCAG CCAGGACTCTGCTGGCTGATCTTGAAGGTACGTGAGTCCAG < 41bp 0.869537040198481 0.613098999189262 0.36907712 0.3866421 prediction 0.512876082018439 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133957542 chr9:133957544 synonymous SNV . 0 23 hm5C_associated_SNPs_63253 0 0 0 0 2 LAMC3 chr9:133957446 3'AG 133957446 Downstream 99bp
chr9 133957544 133957544 1 + G T HNSC 133957542 + 133957522 133957562 41 CCAGGACTCTGCTGGCTGATCTGGAAGGTACGTGAGTCCAG CCAGGACTCTGCTGGCTGATCTTGAAGGTACGTGAGTCCAG < 41bp 0.869537040198481 0.613098999189262 0.36907712 0.3866421 prediction 0.512876082018439 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133957542 chr9:133957544 synonymous SNV . 0 23 hm5C_associated_SNPs_63253 0 0 0 0 2 LAMC3 chr9:133957548 5'GT 133957548 Upstream 5bp
chr13 113783899 113783899 1 + C T STAD 113783897 + 113783877 113783917 41 CCTGCTCATACGAAGAGGCCCGCGAGGTCTTTGAGGACAGC CCTGCTCATACGAAGAGGCCCGTGAGGTCTTTGAGGACAGC < 41bp 0.786574146275446 0.530136796152924 0.35665125 0.28269565 prediction 0.512874700245043 Functional Loss - F10 ENSG00000126218 CDS Human protein_coding chr13:113783897 chr13:113783899 synonymous SNV . 0 23 hm5C_associated_SNPs_63255 0 0 1 0 1 F10 chr13:113783926 5'GT 113783926 Upstream 28bp
chr4 189065255 189065255 1 + C T GBM 189065253 + 189065233 189065273 41 GAGCTGAGTCTGTGCCGCATCACGGGAATGAAGGAGATGCT GAGCTGAGTCTGTGCCGCATCATGGGAATGAAGGAGATGCT < 41bp 0.786547556692356 0.530114982212542 0.31354025 0.34502536 prediction 0.512865148959627 Functional Loss - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189065253 chr4:189065255 nonsynonymous SNV 0.981 3 23 hm5C_associated_SNPs_63256 0 0 0 0 2 TRIML1 chr4:189065190 3'AG 189065190 Downstream 66bp
chr4 189065255 189065255 1 + C T GBM 189065253 + 189065233 189065273 41 GAGCTGAGTCTGTGCCGCATCACGGGAATGAAGGAGATGCT GAGCTGAGTCTGTGCCGCATCATGGGAATGAAGGAGATGCT < 41bp 0.786547556692356 0.530114982212542 0.31354025 0.34502536 prediction 0.512865148959627 Functional Loss - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189065253 chr4:189065255 nonsynonymous SNV 0.981 3 23 hm5C_associated_SNPs_63256 0 0 0 0 2 TRIML1 chr4:189065287 5'GT 189065287 Upstream 33bp
chr3 40502907 40502907 1 + G T SARC 40502905 + 40502885 40502925 41 TGGCTCGTTCTAGTGCCCACCAGAAGTATGTCCGACAAGCC TGGCTCGTTCTAGTGCCCACCATAAGTATGTCCGACAAGCC < 41bp 0.756422293727106 0.4164529445262 0.73651284 0.1154539 prediction 0.512844587454213 Functional Loss - RPL14 ENSG00000188846 CDS Human protein_coding chr3:40502905 chr3:40502907 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_63257 0 0 1 0 1 RPL14 chr3:40502898 3'AG 40502898 Downstream 10bp
chr20 4158178 4158178 1 + G T UCEC 4158176 + 4158156 4158196 41 TACCTTACCAACCACGGCCGCAGGATCCCCAAGGACGTGGT TACCTTACCAACCACGGCCGCATGATCCCCAAGGACGTGGT < 41bp 0.756408177546266 0.406510328786218 0.8412194 0.28140467 prediction 0.512816355092532 Functional Loss - SMOX ENSG00000088826 CDS Human protein_coding chr20:4158176 chr20:4158178 nonsynonymous SNV 0.972 4 23 hm5C_associated_SNPs_63259 0 0 0 0 1 SMOX chr20:4158224 5'GT 4158224 Upstream 47bp
chr10 13151183 13151183 1 + G C OV 13151179 + 13151159 13151199 41 GAGGACAGCCCCAGTGAAAGCACAGGAAATGGACCCCCCCA GAGGACAGCCCCAGTGAAAGCACACGAAATGGACCCCCCCA < 41bp 0.812754202231786 0.556370451237131 0.708565 0.22661936 prediction 0.512767501989309 Functional Loss - OPTN ENSG00000123240 CDS Human protein_coding chr10:13151179 chr10:13151183 nonsynonymous SNV 0.959 5 25 hm5C_associated_SNPs_63265 0 0 1 0 2 OPTN chr10:13151097 3'AG 13151097 Downstream 87bp
chr10 13151183 13151183 1 + G C OV 13151179 + 13151159 13151199 41 GAGGACAGCCCCAGTGAAAGCACAGGAAATGGACCCCCCCA GAGGACAGCCCCAGTGAAAGCACACGAAATGGACCCCCCCA < 41bp 0.812754202231786 0.556370451237131 0.708565 0.22661936 prediction 0.512767501989309 Functional Loss - OPTN ENSG00000123240 CDS Human protein_coding chr10:13151179 chr10:13151183 nonsynonymous SNV 0.959 5 25 hm5C_associated_SNPs_63265 0 0 1 0 2 OPTN chr10:13151112 3'AG 13151112 Downstream 72bp
chr2 122514890 122514890 1 + G T LUSC 122514888 + 122514868 122514908 41 CTCTACTGCAAGGGGTCCATCAGGGTGCTGGGTTTCAGGAC CTCTACTGCAAGGGGTCCATCATGGTGCTGGGTTTCAGGAC < 41bp 0.807092786307409 0.550709381137368 0.94487375 0.58643305 prediction 0.512766810340082 Functional Loss - TSN ENSG00000211460 CDS Human protein_coding chr2:122514888 chr2:122514890 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_63266 0 0 1 0 2 TSN chr2:122514816 3'AG 122514816 Downstream 75bp
chr2 122514890 122514890 1 + G T LUSC 122514888 + 122514868 122514908 41 CTCTACTGCAAGGGGTCCATCAGGGTGCTGGGTTTCAGGAC CTCTACTGCAAGGGGTCCATCATGGTGCTGGGTTTCAGGAC < 41bp 0.807092786307409 0.550709381137368 0.94487375 0.58643305 prediction 0.512766810340082 Functional Loss - TSN ENSG00000211460 CDS Human protein_coding chr2:122514888 chr2:122514890 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_63266 0 0 1 0 2 TSN chr2:122514909 5'GT 122514909 Upstream 20bp
chr20 2841211 2841211 1 + C T SKCM 2841209 + 2841189 2841229 41 TCAGTGCCAATGTGGGTGACCTCAAACTCCGCCGGATGCCA TCAGTGCCAATGTGGGTGACCTTAAACTCCGCCGGATGCCA < 41bp 0.756373711511839 0.470975319777563 0.43799463 0.20807546 prediction 0.512747423023678 Functional Loss - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2841209 chr20:2841211 synonymous SNV . 0 23 hm5C_associated_SNPs_63269 0 0 1 0 1 VPS16 chr20:2841239 5'GT 2841239 Upstream 29bp
chr5 904309 904309 1 + G T COAD 904307 + 904287 904327 41 CCCTGTGTAAAGCGTTAGCCCAGAAATTGACAATTAGACTT CCCTGTGTAAAGCGTTAGCCCATAAATTGACAATTAGACTT < 41bp 0.756363144175637 0.422464508053821 0.08311489 0.07450804 prediction 0.512726288351275 Functional Loss - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:904307 chr5:904309 nonsynonymous SNV 0.912 2 23 hm5C_associated_SNPs_63272 0 0 1 0 2 TRIP13 chr5:904263 3'AG 904263 Downstream 47bp
chr5 904309 904309 1 + G T COAD 904307 + 904287 904327 41 CCCTGTGTAAAGCGTTAGCCCAGAAATTGACAATTAGACTT CCCTGTGTAAAGCGTTAGCCCATAAATTGACAATTAGACTT < 41bp 0.756363144175637 0.422464508053821 0.08311489 0.07450804 prediction 0.512726288351275 Functional Loss - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:904307 chr5:904309 nonsynonymous SNV 0.912 2 23 hm5C_associated_SNPs_63272 0 0 1 0 2 TRIP13 chr5:904335 5'GT 904335 Upstream 27bp
chr6 111196351 111196351 1 + G T COAD 111196348 + 111196328 111196368 41 TCGAAGGGACCGAGAAGCTGCTGGAGGTTTGGTTCTCCCGG TCGAAGGGACCGAGAAGCTGCTGTAGGTTTGGTTCTCCCGG < 41bp 0.897837720101106 0.641476604423932 0.892251 0.35863593 prediction 0.512722231354348 Functional Loss - AMD1 ENSG00000123505 CDS Human protein_coding chr6:111196348 chr6:111196351 stopgain 1.000 1 24 hm5C_associated_SNPs_63275 0 0 1 0 1 AMD1 chr6:111196418 5'GT 111196418 Upstream 68bp
chr9 91083295 91083295 1 + C T COAD 91083293 + 91083273 91083313 41 TTTTTAATCCCCAGCGACATCTCGAATCAGCGATGCACACT TTTTTAATCCCCAGCGACATCTTGAATCAGCGATGCACACT < 41bp 0.831740729613386 0.575382413570137 0.8648747 0.089870155 prediction 0.512716632086498 Functional Loss - SPIN1 ENSG00000106723 CDS Human protein_coding chr9:91083293 chr9:91083295 stopgain 0.612 0 23 hm5C_associated_SNPs_63276 0 0 1 0 1 SPIN1 chr9:91083287 3'AG 91083287 Downstream 9bp
chr2 99172180 99172180 1 + G T ESCA 99172177 + 99172157 99172197 41 AACCCGGACAGCCACGCCTACTGGATCAGACCAGAAGACCC AACCCGGACAGCCACGCCTACTGTATCAGACCAGAAGACCC < 41bp 0.756357227779785 0.375020107349542 0.1286771 0.022242427 prediction 0.51271445555957 Functional Loss - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99172177 chr2:99172180 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_63277 0 0 1 0 1 INPP4A chr2:99172271 5'GT 99172271 Upstream 92bp
chr16 50750840 50750840 1 + C T PRAD 50750838 + 50750818 50750858 41 TTGACTGACGGCTGTGCACACTCCATGGCTAAGCTCCTTGC TTGACTGACGGCTGTGCACACTTCATGGCTAAGCTCCTTGC < 41bp 0.808958114015956 0.55260153245101 0.9360399 0.110174745 prediction 0.512713163129891 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50750838 chr16:50750840 nonsynonymous SNV 0.844 0 23 hm5C_associated_SNPs_63278 0 0 0 0 2 NOD2 chr16:50750802 3'AG 50750802 Downstream 39bp
chr16 50750840 50750840 1 + C T PRAD 50750838 + 50750818 50750858 41 TTGACTGACGGCTGTGCACACTCCATGGCTAAGCTCCTTGC TTGACTGACGGCTGTGCACACTTCATGGCTAAGCTCCTTGC < 41bp 0.808958114015956 0.55260153245101 0.9360399 0.110174745 prediction 0.512713163129891 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50750838 chr16:50750840 nonsynonymous SNV 0.844 0 23 hm5C_associated_SNPs_63278 0 0 0 0 2 NOD2 chr16:50750885 5'GT 50750885 Upstream 46bp
chr10 50887827 50887827 1 + G T rs144285786 50887825 + 50887805 50887845 41 TGGAGCACCACACCTTCCGCCTGCAGGGCCTGCAAGGTGGG TGGAGCACCACACCTTCCGCCTTCAGGGCCTGCAAGGTGGG < 41bp 0.756354514810395 0.424940199105974 0.26071036 0.2192784 prediction 0.512709029620791 Functional Loss - C10orf53 ENSG00000178645 CDS Human protein_coding chr10:50887825 chr10:50887827 synonymous SNV . 0 23 hm5C_associated_SNPs_63279 0 0 0 0 1 C10orf53 chr10:50887840 5'GT 50887840 Upstream 14bp
chr1 244538689 244538689 1 + C T OV 244538687 + 244538667 244538707 41 GCTCTAGTATATTCATCGCTCACCAAGGAAGAGACGTTCAA GCTCTAGTATATTCATCGCTCATCAAGGAAGAGACGTTCAA < 41bp 0.804033736390597 0.547696248449097 0.15891197 0.18067408 prediction 0.512674975883 Functional Loss - C1orf100 ENSG00000173728 CDS Human protein_coding chr1:244538687 chr1:244538689 synonymous SNV . 0 23 hm5C_associated_SNPs_63283 0 0 1 0 2 C1orf100 chr1:244538674 3'AG 244538674 Downstream 16bp
chr1 244538689 244538689 1 + C T OV 244538687 + 244538667 244538707 41 GCTCTAGTATATTCATCGCTCACCAAGGAAGAGACGTTCAA GCTCTAGTATATTCATCGCTCATCAAGGAAGAGACGTTCAA < 41bp 0.804033736390597 0.547696248449097 0.15891197 0.18067408 prediction 0.512674975883 Functional Loss - C1orf100 ENSG00000173728 CDS Human protein_coding chr1:244538687 chr1:244538689 synonymous SNV . 0 23 hm5C_associated_SNPs_63283 0 0 1 0 2 C1orf100 chr1:244538769 5'GT 244538769 Upstream 81bp
chr3 38139062 38139062 1 + G T PAAD 38139060 + 38139040 38139080 41 GTGTCCCTGGCCCCACAAGCCAGGACCTGCTGTGTGAAATC GTGTCCCTGGCCCCACAAGCCATGACCTGCTGTGTGAAATC < 41bp 0.756336098892066 0.405955676597412 0.74219614 0.112677306 prediction 0.512672197784132 Functional Loss - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38139060 chr3:38139062 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_63284 0 0 0 0 2 DLEC1 chr3:38138998 3'AG 38138998 Downstream 65bp
chr3 38139062 38139062 1 + G T PAAD 38139060 + 38139040 38139080 41 GTGTCCCTGGCCCCACAAGCCAGGACCTGCTGTGTGAAATC GTGTCCCTGGCCCCACAAGCCATGACCTGCTGTGTGAAATC < 41bp 0.756336098892066 0.405955676597412 0.74219614 0.112677306 prediction 0.512672197784132 Functional Loss - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38139060 chr3:38139062 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_63284 0 0 0 0 2 DLEC1 chr3:38139128 5'GT 38139128 Upstream 67bp
chr1 186862278 186862278 1 + A C STAD 186862274 + 186862254 186862294 41 AATTTATTTTGGATCCTAATCAGGAAAATGTTTTGGAGGTA AATTTATTTTGGATCCTAATCAGGCAAATGTTTTGGAGGTA < 41bp 0.756334099610058 0.393398664467781 0.88690376 0.8867921 prediction 0.512668199220115 Functional Loss - PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186862274 chr1:186862278 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_63286 0 0 0 0 1 PLA2G4A chr1:186862291 5'GT 186862291 Upstream 14bp
chr19 41265428 41265428 1 + C T SKCM 41265426 + 41265406 41265446 41 GCAAGCGGGAGAAGAGGAAGCCCAAGAGCCAGGAGACCCCG GCAAGCGGGAGAAGAGGAAGCCTAAGAGCCAGGAGACCCCG < 41bp 0.781951070440254 0.525617571896358 0.832585 0.45689616 prediction 0.512666997087793 Functional Loss - SNRPA ENSG00000077312 CDS Human protein_coding chr19:41265426 chr19:41265428 synonymous SNV . 0 23 hm5C_associated_SNPs_63287 0 0 1 0 1 SNRPA chr19:41265515 5'GT 41265515 Upstream 88bp
chr7 73731993 73731993 1 + G T UCEC 73731990 + 73731970 73732010 41 GCGGCGGTGGCCGCTAGCTCCAAGGAAGGTACGTGGCACAC GCGGCGGTGGCCGCTAGCTCCAATGAAGGTACGTGGCACAC < 41bp 0.756325546677012 0.357413257130723 0.7672372 0.060691148 prediction 0.512651093354023 Functional Loss - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731990 chr7:73731993 nonsynonymous SNV 0.975 2 24 hm5C_associated_SNPs_63290 0 0 1 0 1 CLIP2 chr7:73731997 5'GT 73731997 Upstream 5bp
chr2 70039823 70039823 1 + C T STAD 70039821 + 70039801 70039841 41 GAAATTATCTGGACGATGCTCTCGTGAGACAGGATGCCCAG GAAATTATCTGGACGATGCTCTTGTGAGACAGGATGCCCAG < 41bp 0.813641913206176 0.557322764086549 0.117729425 0.10557547 prediction 0.512638298239255 Functional Loss - ANXA4 ENSG00000196975 CDS Human protein_coding chr2:70039821 chr2:70039823 synonymous SNV . 0 23 hm5C_associated_SNPs_63291 0 0 1 0 1 ANXA4 chr2:70039841 5'GT 70039841 Upstream 19bp
chr3 100455497 100455497 1 + C T CESC 100455495 + 100455475 100455515 41 CTCCTCCTCAGCAGCTCACCCACCAGGCGTTCAGCCACAGC CTCCTCCTCAGCAGCTCACCCATCAGGCGTTCAGCCACAGC < 41bp 0.829347528137023 0.573029825526616 0.17939517 0.12709093 prediction 0.512635405220814 Functional Loss - TFG ENSG00000114354 CDS Human protein_coding chr3:100455495 chr3:100455497 nonsynonymous SNV 0.985 2 23 hm5C_associated_SNPs_63293 0 0 1 0 3 TFG chr3:100455420 3'AG 100455420 Downstream 78bp
chr3 100455497 100455497 1 + C T CESC 100455495 + 100455475 100455515 41 CTCCTCCTCAGCAGCTCACCCACCAGGCGTTCAGCCACAGC CTCCTCCTCAGCAGCTCACCCATCAGGCGTTCAGCCACAGC < 41bp 0.829347528137023 0.573029825526616 0.17939517 0.12709093 prediction 0.512635405220814 Functional Loss - TFG ENSG00000114354 CDS Human protein_coding chr3:100455495 chr3:100455497 nonsynonymous SNV 0.985 2 23 hm5C_associated_SNPs_63293 0 0 1 0 3 TFG chr3:100455548 5'GT 100455548 Upstream 52bp
chr3 100455497 100455497 1 + C T CESC 100455495 + 100455475 100455515 41 CTCCTCCTCAGCAGCTCACCCACCAGGCGTTCAGCCACAGC CTCCTCCTCAGCAGCTCACCCATCAGGCGTTCAGCCACAGC < 41bp 0.829347528137023 0.573029825526616 0.17939517 0.12709093 prediction 0.512635405220814 Functional Loss - TFG ENSG00000114354 CDS Human protein_coding chr3:100455495 chr3:100455497 nonsynonymous SNV 0.985 2 23 hm5C_associated_SNPs_63293 0 0 1 0 3 TFG chr3:100455560 5'GT 100455560 Upstream 64bp
chr21 17163920 17163920 1 + G T LUSC 17163918 + 17163898 17163938 41 ACCCTTATGATAGAAAAAGACAGGACAAAGCTCCCGTTGGG ACCCTTATGATAGAAAAAGACATGACAAAGCTCCCGTTGGG < 41bp 0.873129142578143 0.616813943927911 0.5598485 0.14760625 prediction 0.512630397300463 Functional Loss - USP25 ENSG00000155313 CDS Human protein_coding chr21:17163918 chr21:17163920 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_63294 0 0 1 0 1 USP25 chr21:17163983 5'GT 17163983 Upstream 64bp
chr16 19184765 19184765 1 + G T UCEC 19184762 + 19184742 19184782 41 ATGGCCTCAGGGTTTTCTTTCTAGAATCTCTGGTCTGCTGC ATGGCCTCAGGGTTTTCTTTCTATAATCTCTGGTCTGCTGC < 41bp 0.756314105259597 0.490708400749751 0.3078946 0.4076047 prediction 0.512628210519193 Functional Loss - SYT17 ENSG00000103528;ENSG00000103528 exonic;splicing Human protein_coding chr16:19184762 chr16:19184765 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_63295 0 0 0 0 1 SYT17 chr16:19184752 3'AG 19184752 Downstream 14bp
chr2 200820957 200820957 1 + G C BLCA 200820956 + 200820936 200820976 41 TTCAGCATCACAGAGTTCTCCGAGGGAGCGAAGCAGGTTTG TTCAGCATCACAGAGTTCTCCCAGGGAGCGAAGCAGGTTTG < 41bp 0.847867913686766 0.591554781386238 0.92078984 0.5543699 prediction 0.512626264601056 Functional Loss - MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200820956 chr2:200820957 nonsynonymous SNV 0.878 0 22 hm5C_associated_SNPs_63296 0 0 1 0 1 MAIP1 chr2:200820971 5'GT 200820971 Upstream 15bp
chr12 118574086 118574086 1 + G C BRCA 118574085 + 118574065 118574105 41 GGACGAGCAGCCGCAGCACCCGCTGCATGTCACCTACGCCG GGACGAGCAGCCGCAGCACCCCCTGCATGTCACCTACGCCG < 41bp 0.841207447640425 0.584895510664702 0.27802685 0.13473877 prediction 0.512623873951447 Functional Loss - PEBP1 ENSG00000089220 CDS Human protein_coding chr12:118574085 chr12:118574086 synonymous SNV . 0 22 hm5C_associated_SNPs_63297 0 0 1 0 1 PEBP1 chr12:118574149 5'GT 118574149 Upstream 64bp
chr19 7571041 7571041 1 + G T LUAD 7571039 + 7571019 7571059 41 TGCAGCAAAGCTACCTGCCGCGGGGCACGGGCGGTGAGCGC TGCAGCAAAGCTACCTGCCGCGTGGCACGGGCGGTGAGCGC < 41bp 0.883093606884979 0.626783246024387 0.901067 0.4490466 prediction 0.512620721721183 Functional Loss - TEX45 ENSG00000198723 CDS Human protein_coding chr19:7571039 chr19:7571041 synonymous SNV . 0 23 hm5C_associated_SNPs_63299 0 0 0 0 1 TEX45 chr19:7571051 5'GT 7571051 Upstream 11bp
chr1 212459602 212459602 1 + G T UCEC 212459600 + 212459580 212459620 41 AGTTTCGCAGCCAGGGCAGCCAGGCAGAGCTGCACCCGCTG AGTTTCGCAGCCAGGGCAGCCATGCAGAGCTGCACCCGCTG < 41bp 0.882046360120189 0.625736654786209 0.7839504 0.16732737 prediction 0.512619410667959 Functional Loss - PPP2R5A ENSG00000066027 CDS Human protein_coding chr1:212459600 chr1:212459602 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_63300 0 0 1 0 1 PPP2R5A chr1:212459633 5'GT 212459633 Upstream 32bp
chr20 53260054 53260054 1 + C T BLCA 53260052 + 53260032 53260072 41 GAGCACCATGGTGCCCCTGCCTCGCAGCGCCTACTGGCAGC GAGCACCATGGTGCCCCTGCCTTGCAGCGCCTACTGGCAGC < 41bp 0.801864485121638 0.545556074197081 0.4233268 0.07286063 prediction 0.512616821849115 Functional Loss - DOK5 ENSG00000101134 CDS Human protein_coding chr20:53260052 chr20:53260054 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_63301 0 0 0 0 2 DOK5 chr20:53259997 3'AG 53259997 Downstream 58bp
chr20 53260054 53260054 1 + C T BLCA 53260052 + 53260032 53260072 41 GAGCACCATGGTGCCCCTGCCTCGCAGCGCCTACTGGCAGC GAGCACCATGGTGCCCCTGCCTTGCAGCGCCTACTGGCAGC < 41bp 0.801864485121638 0.545556074197081 0.4233268 0.07286063 prediction 0.512616821849115 Functional Loss - DOK5 ENSG00000101134 CDS Human protein_coding chr20:53260052 chr20:53260054 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_63301 0 0 0 0 2 DOK5 chr20:53260117 5'GT 53260117 Upstream 64bp
chr1 148932887 148932887 1 + G T CESC 148932885 + 148932865 148932905 41 GGTGGGAGACGGGTGAGGTACAGGCTCAGTCTGCGGCCAAG GGTGGGAGACGGGTGAGGTACATGCTCAGTCTGCGGCCAAG < 41bp 0.886809670392722 0.630510349963767 0.7009043 0.2783722 prediction 0.512598640857908 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932885 chr1:148932887 . . 0 23 hm5C_associated_SNPs_63303 0 0 0 1 1 LOC645166 chr1:148932920 5'GT 148932920 Upstream 34bp
chrX 65390555 65390555 1 + C T rs145264543 65390553 + 65390533 65390573 41 CCCAAGGGAAGAAATGTCATCACGAACCAGCCTCTGGACAG CCCAAGGGAAGAAATGTCATCATGAACCAGCCTCTGGACAG < 41bp 0.756297928849507 0.498841163207032 0.047946185 0.022581339 prediction 0.512595857699015 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65390553 chrX:65390555 nonsynonymous SNV 0.966 1 23 hm5C_associated_SNPs_63305 0 0 0 0 1 HEPH chrX:65390579 5'GT 65390579 Upstream 25bp
chr10 71688730 71688730 1 + G T LUSC 71688727 + 71688707 71688747 41 TCCTGGGCAAATTGGCCCACCTGGAGCTCCAGGGATTCCAG TCCTGGGCAAATTGGCCCACCTGTAGCTCCAGGGATTCCAG < 41bp 0.756290837396934 0.380520023818249 0.38382748 0.1640062 prediction 0.512581674793869 Functional Loss - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71688727 chr10:71688730 nonsynonymous SNV 0.973 5 24 hm5C_associated_SNPs_63306 0 0 0 0 2 COL13A1 chr10:71688693 3'AG 71688693 Downstream 38bp
chr10 71688730 71688730 1 + G T LUSC 71688727 + 71688707 71688747 41 TCCTGGGCAAATTGGCCCACCTGGAGCTCCAGGGATTCCAG TCCTGGGCAAATTGGCCCACCTGTAGCTCCAGGGATTCCAG < 41bp 0.756290837396934 0.380520023818249 0.38382748 0.1640062 prediction 0.512581674793869 Functional Loss - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71688727 chr10:71688730 nonsynonymous SNV 0.973 5 24 hm5C_associated_SNPs_63306 0 0 0 0 2 COL13A1 chr10:71688755 5'GT 71688755 Upstream 26bp
chr11 44931308 44931308 1 + C T rs34282417 44931306 + 44931286 44931326 41 ATCTGGGTCATGGTGGACCCCACCGGCTTCCGGGAGATCGT ATCTGGGTCATGGTGGACCCCATCGGCTTCCGGGAGATCGT < 41bp 0.756287916229267 0.487169141464608 0.10423097 0.06296125 prediction 0.512575832458535 Functional Loss - TSPAN18 ENSG00000157570 CDS Human protein_coding chr11:44931306 chr11:44931308 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_63307 0 0 0 0 1 TSPAN18 chr11:44931256 3'AG 44931256 Downstream 53bp
chr12 6344713 6344713 1 + C T UCEC 6344711 + 6344691 6344731 41 TCTGCCCCAAGAAGGACGTACTCGAAACCTTCACCGTGAAG TCTGCCCCAAGAAGGACGTACTTGAAACCTTCACCGTGAAG < 41bp 0.756284122559254 0.482097564626859 0.5747899 0.08237168 prediction 0.512568245118508 Functional Loss - CD9 ENSG00000010278 CDS Human protein_coding chr12:6344711 chr12:6344713 synonymous SNV 0.000 0 23 hm5C_associated_SNPs_63309 0 0 1 0 2 CD9 chr12:6344642 3'AG 6344642 Downstream 72bp
chr12 6344713 6344713 1 + C T UCEC 6344711 + 6344691 6344731 41 TCTGCCCCAAGAAGGACGTACTCGAAACCTTCACCGTGAAG TCTGCCCCAAGAAGGACGTACTTGAAACCTTCACCGTGAAG < 41bp 0.756284122559254 0.482097564626859 0.5747899 0.08237168 prediction 0.512568245118508 Functional Loss - CD9 ENSG00000010278 CDS Human protein_coding chr12:6344711 chr12:6344713 synonymous SNV 0.000 0 23 hm5C_associated_SNPs_63309 0 0 1 0 2 CD9 chr12:6344731 5'GT 6344731 Upstream 19bp
chr12 93147901 93147901 1 + C T rs74784157 93147899 + 93147879 93147919 41 ATGAACAATGCAGACGGCTCCACGTGCCAGAGCTGCTAGTG ATGAACAATGCAGACGGCTCCATGTGCCAGAGCTGCTAGTG < 41bp 0.787887383265396 0.531606225045781 0.78957367 0.41514227 prediction 0.512562316439229 Functional Loss - PLEKHG7 ENSG00000187510 CDS Human protein_coding chr12:93147899 chr12:93147901 synonymous SNV . 0 23 hm5C_associated_SNPs_63312 0 0 0 0 1 PLEKHG7 chr12:93147866 3'AG 93147866 Downstream 36bp
chr13 115002321 115002321 1 + G T UCEC 115002319 + 115002299 115002339 41 GGCTCAGTGTCTTTACCTGACAGCACAATATCACAGAGCCG GGCTCAGTGTCTTTACCTGACATCACAATATCACAGAGCCG < 41bp 0.756274789784393 0.427658716302908 0.21333292 0.08127314 prediction 0.512549579568787 Functional Loss - CDC16 ENSG00000130177 CDS Human protein_coding chr13:115002319 chr13:115002321 nonsynonymous SNV 0.990 1 23 hm5C_associated_SNPs_63314 0 0 1 0 3 CDC16 chr13:115002274 3'AG 115002274 Downstream 48bp
chr13 115002321 115002321 1 + G T UCEC 115002319 + 115002299 115002339 41 GGCTCAGTGTCTTTACCTGACAGCACAATATCACAGAGCCG GGCTCAGTGTCTTTACCTGACATCACAATATCACAGAGCCG < 41bp 0.756274789784393 0.427658716302908 0.21333292 0.08127314 prediction 0.512549579568787 Functional Loss - CDC16 ENSG00000130177 CDS Human protein_coding chr13:115002319 chr13:115002321 nonsynonymous SNV 0.990 1 23 hm5C_associated_SNPs_63314 0 0 1 0 3 CDC16 chr13:115002277 3'AG 115002277 Downstream 45bp
chr13 115002321 115002321 1 + G T UCEC 115002319 + 115002299 115002339 41 GGCTCAGTGTCTTTACCTGACAGCACAATATCACAGAGCCG GGCTCAGTGTCTTTACCTGACATCACAATATCACAGAGCCG < 41bp 0.756274789784393 0.427658716302908 0.21333292 0.08127314 prediction 0.512549579568787 Functional Loss - CDC16 ENSG00000130177 CDS Human protein_coding chr13:115002319 chr13:115002321 nonsynonymous SNV 0.990 1 23 hm5C_associated_SNPs_63314 0 0 1 0 3 CDC16 chr13:115002371 5'GT 115002371 Upstream 51bp
chr4 38907405 38907405 1 + G T LUAD 38907403 + 38907383 38907423 41 TGCAGCCACAGATCAGGGCCCTGCAGAAAGCCCACCCACTT TGCAGCCACAGATCAGGGCCCTTCAGAAAGCCCACCCACTT < 41bp 0.756262383323535 0.412781086053687 0.32242405 0.27370983 prediction 0.512524766647069 Functional Loss - FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38907403 chr4:38907405 nonsynonymous SNV 0.413 0 23 hm5C_associated_SNPs_63317 0 0 1 0 2 FAM114A1 chr4:38907376 3'AG 38907376 Downstream 30bp
chr4 38907405 38907405 1 + G T LUAD 38907403 + 38907383 38907423 41 TGCAGCCACAGATCAGGGCCCTGCAGAAAGCCCACCCACTT TGCAGCCACAGATCAGGGCCCTTCAGAAAGCCCACCCACTT < 41bp 0.756262383323535 0.412781086053687 0.32242405 0.27370983 prediction 0.512524766647069 Functional Loss - FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38907403 chr4:38907405 nonsynonymous SNV 0.413 0 23 hm5C_associated_SNPs_63317 0 0 1 0 2 FAM114A1 chr4:38907482 5'GT 38907482 Upstream 78bp
chr1 152856973 152856973 1 + G T LUAD 152856971 + 152856951 152856991 41 GCTGCCCACCACAGCAGAACCAGTGCTGCCAGTCAAAAGGC GCTGCCCACCACAGCAGAACCATTGCTGCCAGTCAAAAGGC < 41bp 0.756259889700028 0.425101231762101 0.5867283 0.39637086 prediction 0.512519779400057 Functional Loss - SMCP ENSG00000163206 CDS Human protein_coding chr1:152856971 chr1:152856973 nonsynonymous SNV 0.015 0 23 hm5C_associated_SNPs_63318 0 0 0 0 1 SMCP chr1:152856879 3'AG 152856879 Downstream 95bp
chr19 4258319 4258319 1 + G T SARC 4258317 + 4258297 4258337 41 AGGAGCTGAAAGACCTGAACCAGCGGCAGGCGCACGTGGAC AGGAGCTGAAAGACCTGAACCATCGGCAGGCGCACGTGGAC < 41bp 0.756253513327839 0.421038576263805 0.9208095 0.28144407 prediction 0.512507026655678 Functional Loss - CCDC94 ENSG00000105248 CDS Human protein_coding chr19:4258317 chr19:4258319 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_63322 0 0 0 0 1 CCDC94 chr19:4258239 3'AG 4258239 Downstream 81bp
chr9 71789273 71789273 1 + G T rs199557806 71789270 + 71789250 71789290 41 GGTCCGGAGCTGCGCGCCTACGCGGGACCTGTGTCCGAAAT GGTCCGGAGCTGCGCGCCTACGCTGGACCTGTGTCCGAAAT < 41bp 0.76874999164307 0.512497973320881 0.40132564 0.1419462 prediction 0.512504036644376 Functional Loss - TJP2 ENSG00000119139 UTR5 Human protein_coding chr9:71789270 chr9:71789273 . . 0 24 hm5C_associated_SNPs_63323 1 0 1 0 1 TJP2 chr9:71789348 5'GT 71789348 Upstream 76bp
chr3 9743545 9743545 1 + G T SKCM 9743543 + 9743523 9743563 41 GCCTTCTTGGCTGCGTACAGCAGCACAGTGGGGCTTCGGGC GCCTTCTTGGCTGCGTACAGCATCACAGTGGGGCTTCGGGC < 41bp 0.87100769492602 0.614764645114468 0.79069835 0.2885652 prediction 0.512486099623104 Functional Loss - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9743543 chr3:9743545 nonsynonymous SNV 0.914 3 23 hm5C_associated_SNPs_63326 0 0 1 0 1 MTMR14 chr3:9743474 3'AG 9743474 Downstream 72bp
chr8 144822037 144822037 1 + G T rs7831467 144822034 + 144822014 144822054 41 GTCGTTTTCCCTTAGGGAAGCCCGGGGAGAACCGCCCGCCG GTCGTTTTCCCTTAGGGAAGCCCTGGGAGAACCGCCCGCCG < 41bp 0.756242409627892 0.357492720459342 0.8582256 0.26091373 prediction 0.512484819255784 Functional Loss - FAM83H-AS1 ENSG00000203499 ncRNA_exonic Human protein_coding chr8:144822034 chr8:144822037 . . 0 24 hm5C_associated_SNPs_63327 0 0 0 0 2 FAM83H-AS1 chr8:144822029 3'AG 144822029 Downstream 9bp
chr8 144822037 144822037 1 + G T rs7831467 144822034 + 144822014 144822054 41 GTCGTTTTCCCTTAGGGAAGCCCGGGGAGAACCGCCCGCCG GTCGTTTTCCCTTAGGGAAGCCCTGGGAGAACCGCCCGCCG < 41bp 0.756242409627892 0.357492720459342 0.8582256 0.26091373 prediction 0.512484819255784 Functional Loss - FAM83H-AS1 ENSG00000203499 ncRNA_exonic Human protein_coding chr8:144822034 chr8:144822037 . . 0 24 hm5C_associated_SNPs_63327 0 0 0 0 2 FAM83H-AS1 chr8:144822118 5'GT 144822118 Upstream 82bp
chr17 27371895 27371895 1 + C T COAD 27371893 + 27371873 27371913 41 CCAGTTCTTTCTACCACACTCCCGAGGAAGCTCCCATGGAC CCAGTTCTTTCTACCACACTCCTGAGGAAGCTCCCATGGAC < 41bp 0.756240697544956 0.47631446992748 0.16442713 0.22886902 prediction 0.512481395089913 Functional Loss - PIPOX ENSG00000179761 CDS Human protein_coding chr17:27371893 chr17:27371895 stopgain 1.000 1 23 hm5C_associated_SNPs_63328 0 0 1 0 1 PIPOX chr17:27371877 3'AG 27371877 Downstream 19bp
chrX 22051181 22051181 1 + C T CESC 22051179 + 22051159 22051199 41 AAAGAAGGCCAACAGAGGCACTCGAATTGCCCTGGTCGTGT AAAGAAGGCCAACAGAGGCACTTGAATTGCCCTGGTCGTGT < 41bp 0.756240169609422 0.495625765246964 0.5762664 0.47730348 prediction 0.512480339218843 Functional Loss - PHEX ENSG00000102174 CDS Human protein_coding chrX:22051179 chrX:22051181 stopgain 0.029 0 23 hm5C_associated_SNPs_63329 1 0 0 0 1 PHEX chrX:22051241 5'GT 22051241 Upstream 61bp
chr2 231118045 231118045 1 + G T LUSC 231118043 + 231118023 231118063 41 TCTGTCAGTTTCTTGTTTATCTGCAGAGACCTTTGATCTAA TCTGTCAGTTTCTTGTTTATCTTCAGAGACCTTTGATCTAA < 41bp 0.854367363629967 0.598129186173986 0.15032464 0.12659419 prediction 0.512476354911963 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231118043 chr2:231118045 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_63331 0 0 0 0 2 SP140 chr2:231118031 3'AG 231118031 Downstream 15bp
chr2 231118045 231118045 1 + G T LUSC 231118043 + 231118023 231118063 41 TCTGTCAGTTTCTTGTTTATCTGCAGAGACCTTTGATCTAA TCTGTCAGTTTCTTGTTTATCTTCAGAGACCTTTGATCTAA < 41bp 0.854367363629967 0.598129186173986 0.15032464 0.12659419 prediction 0.512476354911963 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231118043 chr2:231118045 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_63331 0 0 0 0 2 SP140 chr2:231118132 5'GT 231118132 Upstream 88bp
chr10 116719551 116719551 1 + G T UCEC 116719549 + 116719529 116719569 41 AGATTCTACGGGGAGGGTAACAGAAGAAAAACCTTACGGTA AGATTCTACGGGGAGGGTAACATAAGAAAAACCTTACGGTA < 41bp 0.874904132293648 0.618666687934364 0.77934235 0.13440332 prediction 0.512474888718567 Functional Loss - TRUB1 ENSG00000165832 CDS Human protein_coding chr10:116719549 chr10:116719551 stopgain 0.997 1 23 hm5C_associated_SNPs_63333 0 0 1 0 2 TRUB1 chr10:116719485 3'AG 116719485 Downstream 67bp
chr10 116719551 116719551 1 + G T UCEC 116719549 + 116719529 116719569 41 AGATTCTACGGGGAGGGTAACAGAAGAAAAACCTTACGGTA AGATTCTACGGGGAGGGTAACATAAGAAAAACCTTACGGTA < 41bp 0.874904132293648 0.618666687934364 0.77934235 0.13440332 prediction 0.512474888718567 Functional Loss - TRUB1 ENSG00000165832 CDS Human protein_coding chr10:116719549 chr10:116719551 stopgain 0.997 1 23 hm5C_associated_SNPs_63333 0 0 1 0 2 TRUB1 chr10:116719566 5'GT 116719566 Upstream 16bp
chr4 100784193 100784193 1 + G T ESCA 100784191 + 100784171 100784211 41 GGAAAACAAGATGGTTTACTCTGCACAGGAATGAACTGAAA GGAAAACAAGATGGTTTACTCTTCACAGGAATGAACTGAAA < 41bp 0.84418810189344 0.587951433611923 0.19285047 0.15249917 prediction 0.512473336563033 Functional Loss - DAPP1 ENSG00000070190 CDS Human protein_coding chr4:100784191 chr4:100784193 synonymous SNV . 0 23 hm5C_associated_SNPs_63335 0 0 0 0 2 DAPP1 chr4:100784167 3'AG 100784167 Downstream 27bp
chr4 100784193 100784193 1 + G T ESCA 100784191 + 100784171 100784211 41 GGAAAACAAGATGGTTTACTCTGCACAGGAATGAACTGAAA GGAAAACAAGATGGTTTACTCTTCACAGGAATGAACTGAAA < 41bp 0.84418810189344 0.587951433611923 0.19285047 0.15249917 prediction 0.512473336563033 Functional Loss - DAPP1 ENSG00000070190 CDS Human protein_coding chr4:100784191 chr4:100784193 synonymous SNV . 0 23 hm5C_associated_SNPs_63335 0 0 0 0 2 DAPP1 chr4:100784229 5'GT 100784229 Upstream 37bp
chr10 96988429 96988429 1 + G T UCEC 96988426 + 96988406 96988446 41 CTGGGAGGAATATGCTTCAGCAAGAGGCCACATGCTTTACC CTGGGAGGAATATGCTTCAGCAATAGGCCACATGCTTTACC < 41bp 0.756221732349838 0.37480714249582 0.8697815 0.22425193 prediction 0.512443464699676 Functional Loss - ACSM6 ENSG00000173124 CDS Human protein_coding chr10:96988426 chr10:96988429 nonsynonymous SNV 0.929 0 24 hm5C_associated_SNPs_63338 0 0 0 0 1 ACSM6 chr10:96988401 3'AG 96988401 Downstream 29bp
chr1 158815699 158815699 1 + G T UCEC 158815697 + 158815677 158815717 41 CAAAATTTTGAGGTCCCAAACAGAATTATCGAAATAGCAAA CAAAATTTTGAGGTCCCAAACATAATTATCGAAATAGCAAA < 41bp 0.756219742209044 0.44414016055181 0.15051532 0.041225463 prediction 0.512439484418088 Functional Loss - MNDA ENSG00000163563 CDS Human protein_coding chr1:158815697 chr1:158815699 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_63340 0 0 0 0 1 MNDA chr1:158815793 5'GT 158815793 Upstream 95bp
chr4 120072068 120072068 1 + A T UCEC 120072064 + 120072044 120072084 41 CTGGGCAAAAAGGTCAGCATCCCCAGAGACATCATGTTGGA CTGGGCAAAAAGGTCAGCATCCCCTGAGACATCATGTTGGA < 41bp 0.756214378453376 0.414081933962406 0.13510564 0.06368643 prediction 0.512428756906752 Functional Loss - MYOZ2 ENSG00000172399 CDS Human protein_coding chr4:120072064 chr4:120072068 stopgain 1.000 1 25 hm5C_associated_SNPs_63341 0 0 0 0 1 MYOZ2 chr4:120072027 3'AG 120072027 Downstream 42bp
chr12 122620095 122620095 1 + G T LUSC 122620092 + 122620072 122620112 41 GTGACAGATCTCGGCCATGGCACGAGCAGCCCGCCTGCCCC GTGACAGATCTCGGCCATGGCACTAGCAGCCCGCCTGCCCC < 41bp 0.918100278384305 0.661890985915624 0.5935119 0.2616703 prediction 0.512418584937361 Functional Loss - MLXIP ENSG00000175727 CDS Human protein_coding chr12:122620092 chr12:122620095 synonymous SNV . 0 24 hm5C_associated_SNPs_63343 0 0 1 0 1 MLXIP chr12:122620036 3'AG 122620036 Downstream 60bp
chr2 155555961 155555961 1 + C T SKCM 155555959 + 155555939 155555979 41 CTGCGCAACAGCCACATGGTCTCCGCGCAGATTCGCTGCAA CTGCGCAACAGCCACATGGTCTTCGCGCAGATTCGCTGCAA < 41bp 0.756208511022219 0.487954982981649 0.10707757 0.06344184 prediction 0.512417022044437 Functional Loss - KCNJ3 ENSG00000162989 CDS Human protein_coding chr2:155555959 chr2:155555961 nonsynonymous SNV 0.979 5 23 hm5C_associated_SNPs_63344 0 0 0 0 1 KCNJ3 chr2:155555989 5'GT 155555989 Upstream 29bp
chr9 131285001 131285001 1 + G C LUAD 131284997 + 131284977 131285017 41 GAGAGGAAGGTGCAAGCCCTCTCGGAGATGGCATCTGAACA GAGAGGAAGGTGCAAGCCCTCTCGCAGATGGCATCTGAACA < 41bp 0.811903245804436 0.55569698463644 0.32934445 0.35701853 prediction 0.512412522335992 Functional Loss - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131284997 chr9:131285001 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_63346 0 0 1 0 2 GLE1 chr9:131284947 3'AG 131284947 Downstream 55bp
chr9 131285001 131285001 1 + G C LUAD 131284997 + 131284977 131285017 41 GAGAGGAAGGTGCAAGCCCTCTCGGAGATGGCATCTGAACA GAGAGGAAGGTGCAAGCCCTCTCGCAGATGGCATCTGAACA < 41bp 0.811903245804436 0.55569698463644 0.32934445 0.35701853 prediction 0.512412522335992 Functional Loss - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131284997 chr9:131285001 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_63346 0 0 1 0 2 GLE1 chr9:131285095 5'GT 131285095 Upstream 95bp
chr3 131101103 131101103 1 + G C BLCA 131101102 + 131101082 131101122 41 TATGCCAAGCGTCTGACGCTCGAGGAGCTGTTGGCTGTGGA TATGCCAAGCGTCTGACGCTCCAGGAGCTGTTGGCTGTGGA < 41bp 0.756198662449858 0.444481873105138 0.9001186 0.4369545 prediction 0.512397324899717 Functional Loss - NUDT16 ENSG00000198585 CDS Human protein_coding chr3:131101102 chr3:131101103 nonsynonymous SNV 0.768 0 22 hm5C_associated_SNPs_63348 0 0 1 0 1 NUDT16 chr3:131101159 5'GT 131101159 Upstream 57bp
chr6 37414177 37414177 1 + C T SKCM 37414175 + 37414155 37414195 41 GAAGAGGCTTGGGTCTGACACTCCGGGGCTTTGACCAGGAG GAAGAGGCTTGGGTCTGACACTTCGGGGCTTTGACCAGGAG < 41bp 0.756195729336111 0.471573313309823 0.22629592 0.14332148 prediction 0.512391458672223 Functional Loss - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37414175 chr6:37414177 synonymous SNV . 0 23 hm5C_associated_SNPs_63349 0 0 1 0 1 CMTR1 chr6:37414225 5'GT 37414225 Upstream 49bp
chr2 29152512 29152512 1 + A T UCEC 29152508 + 29152488 29152528 41 ACAAAAAAGGAAAGGAAGACCTCCAGACGAATAGCTTTCCA ACAAAAAAGGAAAGGAAGACCTCCTGACGAATAGCTTTCCA < 41bp 0.888785164372312 0.632596305979999 0.95246613 0.09909582 prediction 0.512377716784626 Functional Loss - WDR43 ENSG00000163811 CDS Human protein_coding chr2:29152508 chr2:29152512 nonsynonymous SNV 0.892 2 25 hm5C_associated_SNPs_63350 0 0 1 0 2 WDR43 chr2:29152445 3'AG 29152445 Downstream 68bp
chr2 29152512 29152512 1 + A T UCEC 29152508 + 29152488 29152528 41 ACAAAAAAGGAAAGGAAGACCTCCAGACGAATAGCTTTCCA ACAAAAAAGGAAAGGAAGACCTCCTGACGAATAGCTTTCCA < 41bp 0.888785164372312 0.632596305979999 0.95246613 0.09909582 prediction 0.512377716784626 Functional Loss - WDR43 ENSG00000163811 CDS Human protein_coding chr2:29152508 chr2:29152512 nonsynonymous SNV 0.892 2 25 hm5C_associated_SNPs_63350 0 0 1 0 2 WDR43 chr2:29152576 5'GT 29152576 Upstream 65bp
chr7 92078113 92078113 1 + A T CHOL 92078109 + 92078089 92078129 41 GTCTGCTCGGCTCAGAAACACTAAATACAAATCTGCTCCGG GTCTGCTCGGCTCAGAAACACTAATTACAAATCTGCTCCGG < 41bp 0.756182001784514 0.41487647275903 0.28218493 0.10962698 prediction 0.512364003569027 Functional Loss - GATAD1 ENSG00000157259 CDS Human protein_coding chr7:92078109 chr7:92078113 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_63351 0 0 1 0 1 GATAD1 chr7:92078191 5'GT 92078191 Upstream 79bp
chrX 138619252 138619252 1 + G T GBM 138619249 + 138619229 138619269 41 GTAAATTGGAAGAGTTTGTTCAAGGGAACCTTGAGAGAGAA GTAAATTGGAAGAGTTTGTTCAATGGAACCTTGAGAGAGAA < 41bp 0.756177332284427 0.372623131842081 0.7240066 0.20977259 prediction 0.512354664568854 Functional Loss - F9 ENSG00000101981 CDS Human protein_coding chrX:138619249 chrX:138619252 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_63353 0 0 0 0 2 F9 chrX:138619169 3'AG 138619169 Downstream 84bp
chrX 138619252 138619252 1 + G T GBM 138619249 + 138619229 138619269 41 GTAAATTGGAAGAGTTTGTTCAAGGGAACCTTGAGAGAGAA GTAAATTGGAAGAGTTTGTTCAATGGAACCTTGAGAGAGAA < 41bp 0.756177332284427 0.372623131842081 0.7240066 0.20977259 prediction 0.512354664568854 Functional Loss - F9 ENSG00000101981 CDS Human protein_coding chrX:138619249 chrX:138619252 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_63353 0 0 0 0 2 F9 chrX:138619332 5'GT 138619332 Upstream 81bp
chr4 72313411 72313411 1 + C T rs34373561 72313409 + 72313389 72313429 41 AGGGGAAAGCCAAGTCCTACCACGAGATTGGCAGAGCCATT AGGGGAAAGCCAAGTCCTACCATGAGATTGGCAGAGCCATT < 41bp 0.756170960503937 0.493270371688862 0.31192985 0.22696921 prediction 0.512341921007874 Functional Loss - SLC4A4 ENSG00000080493 CDS Human protein_coding chr4:72313409 chr4:72313411 synonymous SNV . 0 23 hm5C_associated_SNPs_63354 1 0 0 0 1 SLC4A4 chr4:72313450 5'GT 72313450 Upstream 40bp
chr8 120114623 120114623 1 + G T PRAD 120114620 + 120114600 120114640 41 AAAAGGTTTGCTTGGAATACCTGGAGAAAAAGGCAAAGCAG AAAAGGTTTGCTTGGAATACCTGTAGAAAAAGGCAAAGCAG < 41bp 0.901271383850102 0.645111350844796 0.5642919 0.39062506 prediction 0.512320066010612 Functional Loss - COLEC10 ENSG00000184374 CDS Human protein_coding chr8:120114620 chr8:120114623 nonsynonymous SNV 0.818 5 24 hm5C_associated_SNPs_63356 0 0 0 0 2 COLEC10 chr8:120114587 3'AG 120114587 Downstream 37bp
chr8 120114623 120114623 1 + G T PRAD 120114620 + 120114600 120114640 41 AAAAGGTTTGCTTGGAATACCTGGAGAAAAAGGCAAAGCAG AAAAGGTTTGCTTGGAATACCTGTAGAAAAAGGCAAAGCAG < 41bp 0.901271383850102 0.645111350844796 0.5642919 0.39062506 prediction 0.512320066010612 Functional Loss - COLEC10 ENSG00000184374 CDS Human protein_coding chr8:120114620 chr8:120114623 nonsynonymous SNV 0.818 5 24 hm5C_associated_SNPs_63356 0 0 0 0 2 COLEC10 chr8:120114640 5'GT 120114640 Upstream 18bp
chr9 34977568 34977568 1 + G C CESC 34977564 + 34977544 34977584 41 ATCAGCCATGTGGGTCCCATCGCAGATAGCAGCCCAGCCAG ATCAGCCATGTGGGTCCCATCGCACATAGCAGCCCAGCCAG < 41bp 0.841146801736328 0.584989792853586 0.80238914 0.26755285 prediction 0.512314017765484 Functional Loss - PHF24 ENSG00000122733 CDS Human protein_coding chr9:34977564 chr9:34977568 nonsynonymous SNV 0.994 3 25 hm5C_associated_SNPs_63358 0 0 0 0 2 PHF24 chr9:34977543 3'AG 34977543 Downstream 26bp
chr9 34977568 34977568 1 + G C CESC 34977564 + 34977544 34977584 41 ATCAGCCATGTGGGTCCCATCGCAGATAGCAGCCCAGCCAG ATCAGCCATGTGGGTCCCATCGCACATAGCAGCCCAGCCAG < 41bp 0.841146801736328 0.584989792853586 0.80238914 0.26755285 prediction 0.512314017765484 Functional Loss - PHF24 ENSG00000122733 CDS Human protein_coding chr9:34977564 chr9:34977568 nonsynonymous SNV 0.994 3 25 hm5C_associated_SNPs_63358 0 0 0 0 2 PHF24 chr9:34977638 5'GT 34977638 Upstream 71bp
chr20 61468540 61468540 1 + C T SKCM 61468538 + 61468518 61468558 41 GGGCCCCCAGGACCCCCAGGCTCCATTGGTCACCCTGGCGC GGGCCCCCAGGACCCCCAGGCTTCATTGGTCACCCTGGCGC < 41bp 0.78856412499885 0.532413758504273 0.9355463 0.15589061 prediction 0.512300732989154 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61468538 chr20:61468540 nonsynonymous SNV 0.768 4 23 hm5C_associated_SNPs_63360 0 0 1 0 1 COL9A3 chr20:61468617 5'GT 61468617 Upstream 78bp
chr2 169713227 169713227 1 + C T UCEC 169713225 + 169713205 169713245 41 GAACGAATGCTTAAAACGTACTCCAGCACCTCCTCCTTCTC GAACGAATGCTTAAAACGTACTTCAGCACCTCCTCCTTCTC < 41bp 0.756146605268225 0.460037058122598 0.8599913 0.037787706 prediction 0.512293210536451 Functional Loss - NOSTRIN ENSG00000163072 CDS Human protein_coding chr2:169713225 chr2:169713227 nonsynonymous SNV 0.112 1 23 hm5C_associated_SNPs_63363 0 0 1 0 2 NOSTRIN chr2:169713200 3'AG 169713200 Downstream 28bp
chr2 169713227 169713227 1 + C T UCEC 169713225 + 169713205 169713245 41 GAACGAATGCTTAAAACGTACTCCAGCACCTCCTCCTTCTC GAACGAATGCTTAAAACGTACTTCAGCACCTCCTCCTTCTC < 41bp 0.756146605268225 0.460037058122598 0.8599913 0.037787706 prediction 0.512293210536451 Functional Loss - NOSTRIN ENSG00000163072 CDS Human protein_coding chr2:169713225 chr2:169713227 nonsynonymous SNV 0.112 1 23 hm5C_associated_SNPs_63363 0 0 1 0 2 NOSTRIN chr2:169713288 5'GT 169713288 Upstream 62bp
chr1 37947258 37947258 1 + C T UCEC 37947256 + 37947236 37947276 41 GATCCTGGTGTTCACACCATCACGACGCGTGGGTGGCAAGC GATCCTGGTGTTCACACCATCATGACGCGTGGGTGGCAAGC < 41bp 0.809735675440539 0.553595408087089 0.20206404 0.30421686 prediction 0.5122805347069 Functional Loss - ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947256 chr1:37947258 stopgain 0.034 1 23 hm5C_associated_SNPs_63366 0 0 1 0 1 ZC3H12A chr1:37947202 3'AG 37947202 Downstream 57bp
chr1 33760842 33760842 1 + C T LUAD 33760840 + 33760820 33760860 41 GCTTCTTTGCAGATCCACCTCTCGGCCCACGCCATCAAGCA GCTTCTTTGCAGATCCACCTCTTGGCCCACGCCATCAAGCA < 41bp 0.78788383248029 0.531746693202943 0.23946702 0.19051895 prediction 0.512274278554694 Functional Loss - ZNF362 ENSG00000160094 CDS Human protein_coding chr1:33760840 chr1:33760842 nonsynonymous SNV 0.985 1 23 hm5C_associated_SNPs_63367 0 0 0 0 2 ZNF362 chr1:33760748 3'AG 33760748 Downstream 95bp
chr1 33760842 33760842 1 + C T LUAD 33760840 + 33760820 33760860 41 GCTTCTTTGCAGATCCACCTCTCGGCCCACGCCATCAAGCA GCTTCTTTGCAGATCCACCTCTTGGCCCACGCCATCAAGCA < 41bp 0.78788383248029 0.531746693202943 0.23946702 0.19051895 prediction 0.512274278554694 Functional Loss - ZNF362 ENSG00000160094 CDS Human protein_coding chr1:33760840 chr1:33760842 nonsynonymous SNV 0.985 1 23 hm5C_associated_SNPs_63367 0 0 0 0 2 ZNF362 chr1:33760906 5'GT 33760906 Upstream 65bp
chr11 65721160 65721160 1 + G T BLCA 65721157 + 65721137 65721177 41 CTGCCTGGCAGCCTACGCACCCAGAGGGAGCCGGGGCCCTG CTGCCTGGCAGCCTACGCACCCATAGGGAGCCGGGGCCCTG < 41bp 0.756133638465476 0.362068085120253 0.3703593 0.03738621 prediction 0.512267276930952 Functional Loss - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65721157 chr11:65721160 unknown 0.025 0 24 hm5C_associated_SNPs_63370 0 0 0 0 1 TSGA10IP chr11:65721208 5'GT 65721208 Upstream 49bp
chr16 54965318 54965318 1 + G C HNSC 54965314 + 54965294 54965334 41 AACTCGCACCTCCAGTACGGCGCCGACCCCGCGGCCGCCGC AACTCGCACCTCCAGTACGGCGCCCACCCCGCGGCCGCCGC < 41bp 0.756129364564839 0.484886337022507 0.19364047 0.041229784 prediction 0.512258729129677 Functional Loss - IRX5 ENSG00000176842 CDS Human protein_coding chr16:54965314 chr16:54965318 nonsynonymous SNV 0.984 4 25 hm5C_associated_SNPs_63371 0 0 0 0 1 IRX5 chr16:54965359 5'GT 54965359 Upstream 42bp
chr1 167666424 167666424 1 + G T KIRC 167666422 + 167666402 167666442 41 TGTGGAGAACTTGGAGATTTCAGGGCGGTGGAGTCATCTCA TGTGGAGAACTTGGAGATTTCATGGCGGTGGAGTCATCTCA < 41bp 0.890410889797631 0.634282592775227 0.9015397 0.84843457 prediction 0.512256594044807 Functional Loss - RCSD1 ENSG00000198771 CDS Human protein_coding chr1:167666422 chr1:167666424 nonsynonymous SNV 0.861 2 23 hm5C_associated_SNPs_63372 0 0 0 0 1 RCSD1 chr1:167666336 3'AG 167666336 Downstream 89bp
chr20 36718149 36718149 1 + C T UCEC 36718147 + 36718127 36718167 41 GGAATACAAACAGAAGCTTGCACGAGTAACCCAGGTCCGCA GGAATACAAACAGAAGCTTGCATGAGTAACCCAGGTCCGCA < 41bp 0.779458744597042 0.523332884151957 0.2452986 0.35384816 prediction 0.512251720890171 Functional Loss - RPRD1B ENSG00000101413 CDS Human protein_coding chr20:36718147 chr20:36718149 stopgain 0.955 1 23 hm5C_associated_SNPs_63373 0 0 1 0 1 RPRD1B chr20:36718128 3'AG 36718128 Downstream 22bp
chr8 17419540 17419540 1 + C T UCEC 17419538 + 17419518 17419558 41 GCCTGGAGCCTCGCTCTCCTCGCGCTGTTTCTTGTTCTCTT GCCTGGAGCCTCGCTCTCCTCGTGCTGTTTCTTGTTCTCTT < 41bp 0.783052346039864 0.526931751995117 0.14624086 0.23922378 prediction 0.512241188089494 Functional Loss - SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17419538 chr8:17419540 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_63374 0 0 1 0 2 SLC7A2 chr8:17419453 3'AG 17419453 Downstream 88bp
chr8 17419540 17419540 1 + C T UCEC 17419538 + 17419518 17419558 41 GCCTGGAGCCTCGCTCTCCTCGCGCTGTTTCTTGTTCTCTT GCCTGGAGCCTCGCTCTCCTCGTGCTGTTTCTTGTTCTCTT < 41bp 0.783052346039864 0.526931751995117 0.14624086 0.23922378 prediction 0.512241188089494 Functional Loss - SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17419538 chr8:17419540 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_63374 0 0 1 0 2 SLC7A2 chr8:17419619 5'GT 17419619 Upstream 80bp
chr6 26598534 26598534 1 + C T BLCA 26598532 + 26598512 26598552 41 GGTCCCACCTCAGCGAGCACCTCGCCTTTGAGCGCCAGGTG GGTCCCACCTCAGCGAGCACCTTGCCTTTGAGCGCCAGGTG < 41bp 0.762593448687311 0.506481817832178 0.087521106 0.06455675 prediction 0.512223261710266 Functional Loss - ABT1 ENSG00000146109 CDS Human protein_coding chr6:26598532 chr6:26598534 synonymous SNV . 0 23 hm5C_associated_SNPs_63376 0 0 1 0 1 ABT1 chr6:26598493 3'AG 26598493 Downstream 42bp
chr17 37357472 37357472 1 + C T BLCA 37357470 + 37357450 37357490 41 TTTTCTGTGTGTCTAGTATGCTCAGGCTTCAGAAGAGGCTC TTTTCTGTGTGTCTAGTATGCTTAGGCTTCAGAAGAGGCTC < 41bp 0.772669468659671 0.516561025418832 0.106850386 0.1768497 prediction 0.512216886481677 Functional Loss - RPL19 ENSG00000108298 CDS Human protein_coding chr17:37357470 chr17:37357472 synonymous SNV . 0 23 hm5C_associated_SNPs_63378 0 0 1 0 1 RPL19 chr17:37357466 3'AG 37357466 Downstream 7bp
chr8 110573096 110573096 1 + G T GBM 110573094 + 110573074 110573114 41 TAGGTGACTTAGATACCTGGCAGGAAAATACCAATGCATGG TAGGTGACTTAGATACCTGGCATGAAAATACCAATGCATGG < 41bp 0.756095022312671 0.423034971040064 0.48562175 0.16615957 prediction 0.512190044625341 Functional Loss - EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110573094 chr8:110573096 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_63379 0 0 1 3 1 EBAG9 chr8:110573067 3'AG 110573067 Downstream 30bp
chr8 110573097 110573097 1 + G T OV 110573094 + 110573074 110573114 41 TAGGTGACTTAGATACCTGGCAGGAAAATACCAATGCATGG TAGGTGACTTAGATACCTGGCAGTAAAATACCAATGCATGG < 41bp 0.756095022312671 0.380139511095141 0.48562175 0.17596796 prediction 0.512190044625341 Functional Loss - EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110573094 chr8:110573097 stopgain 0.999 1 24 hm5C_associated_SNPs_63380 0 0 1 3 1 EBAG9 chr8:110573067 3'AG 110573067 Downstream 31bp
chr3 46942554 46942554 1 + G T COAD 46942552 + 46942532 46942572 41 GTGGCTGTGTGGGTCAGTGTCAGAGCTACCCTGGCCAACAC GTGGCTGTGTGGGTCAGTGTCATAGCTACCCTGGCCAACAC < 41bp 0.894702746250015 0.638612432156305 0.92863774 0.79652786 prediction 0.51218062818742 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46942552 chr3:46942554 nonsynonymous SNV 0.992 2 23 hm5C_associated_SNPs_63381 0 0 0 0 2 PTH1R chr3:46942515 3'AG 46942515 Downstream 40bp
chr3 46942554 46942554 1 + G T COAD 46942552 + 46942532 46942572 41 GTGGCTGTGTGGGTCAGTGTCAGAGCTACCCTGGCCAACAC GTGGCTGTGTGGGTCAGTGTCATAGCTACCCTGGCCAACAC < 41bp 0.894702746250015 0.638612432156305 0.92863774 0.79652786 prediction 0.51218062818742 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46942552 chr3:46942554 nonsynonymous SNV 0.992 2 23 hm5C_associated_SNPs_63381 0 0 0 0 2 PTH1R chr3:46942575 5'GT 46942575 Upstream 22bp
chr9 130913939 130913939 1 + A C UCEC 130913935 + 130913915 130913955 41 AGGAAAAAGAAGTGTGACTACTGGATCAGGACTTTTGTTCC AGGAAAAAGAAGTGTGACTACTGGCTCAGGACTTTTGTTCC < 41bp 0.914465963145773 0.658378131617111 0.19714963 0.17039561 prediction 0.512175663057323 Functional Loss - LCN2 ENSG00000148346 CDS Human protein_coding chr9:130913935 chr9:130913939 nonsynonymous SNV 0.719 0 25 hm5C_associated_SNPs_63383 0 0 0 0 1 LCN2 chr9:130913917 3'AG 130913917 Downstream 23bp
chr21 34619141 34619141 1 + A C PAAD 34619140 + 34619120 34619160 41 GTCACCGTCCTAGAAGGATTCAGCGGGAACACAACGTTGTT GTCACCGTCCTAGAAGGATTCCGCGGGAACACAACGTTGTT < 41bp 0.766353466560976 0.510278810140672 0.87983143 0.578395 prediction 0.512149312840609 Functional Loss - IFNAR2 ENSG00000159110;ENSG00000249624 CDS Human other chr21:34619140 chr21:34619141 nonsynonymous SNV 0.443 0 22 hm5C_associated_SNPs_63386 0 0 1 0 1 IFNAR2 chr21:34619195 5'GT 34619195 Upstream 55bp
chr17 2266381 2266381 1 + G T rs112097002 2266378 + 2266358 2266398 41 TGGTCCAGCGGCACCGCATCCGGGGTCCACCTACTCGCCAG TGGTCCAGCGGCACCGCATCCGGTGTCCACCTACTCGCCAG < 41bp 0.915760197048998 0.659691481757751 0.90779877 0.57851547 prediction 0.512137430582494 Functional Loss - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2266378 chr17:2266381 nonsynonymous SNV 0.914 4 24 hm5C_associated_SNPs_63387 0 0 1 0 2 SGSM2 chr17:2266283 3'AG 2266283 Downstream 99bp
chr17 2266381 2266381 1 + G T rs112097002 2266378 + 2266358 2266398 41 TGGTCCAGCGGCACCGCATCCGGGGTCCACCTACTCGCCAG TGGTCCAGCGGCACCGCATCCGGTGTCCACCTACTCGCCAG < 41bp 0.915760197048998 0.659691481757751 0.90779877 0.57851547 prediction 0.512137430582494 Functional Loss - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2266378 chr17:2266381 nonsynonymous SNV 0.914 4 24 hm5C_associated_SNPs_63387 0 0 1 0 2 SGSM2 chr17:2266428 5'GT 2266428 Upstream 48bp
chr19 6828446 6828446 1 + C T COAD 6828444 + 6828424 6828464 41 TCTCAGGAGCTGGTGAAACACACGCAGGAGGCGATGGAGAA TCTCAGGAGCTGGTGAAACACATGCAGGAGGCGATGGAGAA < 41bp 0.756067136255115 0.485741403114661 0.07020712 0.26386434 prediction 0.51213427251023 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6828444 chr19:6828446 nonsynonymous SNV 0.932 4 23 hm5C_associated_SNPs_63388 0 0 1 0 1 VAV1 chr19:6828430 3'AG 6828430 Downstream 17bp
chr11 34119305 34119305 1 + C T ESCA 34119303 + 34119283 34119323 41 GAGTGGACCACGGGGAGCCCCACGAGGTAATATTTTGTGGT GAGTGGACCACGGGGAGCCCCATGAGGTAATATTTTGTGGT < 41bp 0.806790493998456 0.550727020895145 0.5399655 0.50701255 prediction 0.512126946206622 Functional Loss - CAPRIN1 ENSG00000135387 CDS Human protein_coding chr11:34119303 chr11:34119305 stopgain 1.000 0 23 hm5C_associated_SNPs_63389 0 0 1 0 2 CAPRIN1 chr11:34119245 3'AG 34119245 Downstream 61bp
chr11 34119305 34119305 1 + C T ESCA 34119303 + 34119283 34119323 41 GAGTGGACCACGGGGAGCCCCACGAGGTAATATTTTGTGGT GAGTGGACCACGGGGAGCCCCATGAGGTAATATTTTGTGGT < 41bp 0.806790493998456 0.550727020895145 0.5399655 0.50701255 prediction 0.512126946206622 Functional Loss - CAPRIN1 ENSG00000135387 CDS Human protein_coding chr11:34119303 chr11:34119305 stopgain 1.000 0 23 hm5C_associated_SNPs_63389 0 0 1 0 2 CAPRIN1 chr11:34119308 5'GT 34119308 Upstream 4bp
chr17 40845455 40845455 1 + C T HNSC 40845453 + 40845433 40845473 41 CACAGGCCACTGTGCCCACCCTCGGCTCCCCTGTTTCCATG CACAGGCCACTGTGCCCACCCTTGGCTCCCCTGTTTCCATG < 41bp 0.803976390062155 0.547914198492957 0.026355654 0.011873275 prediction 0.512124383138397 Functional Loss - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40845453 chr17:40845455 nonsynonymous SNV 0.921 2 23 hm5C_associated_SNPs_63390 0 0 1 0 1 CNTNAP1 chr17:40845554 5'GT 40845554 Upstream 100bp
chr9 129455807 129455807 1 + G C BLCA 129455806 + 129455786 129455826 41 CCCTCTCTCTGAGCCAGGTCCGAGAGACACTGGCAGCTGAG CCCTCTCTCTGAGCCAGGTCCCAGAGACACTGGCAGCTGAG < 41bp 0.756057869209005 0.42883190260276 0.85914755 0.67802465 prediction 0.51211573841801 Functional Loss - LMX1B ENSG00000136944 CDS Human protein_coding chr9:129455806 chr9:129455807 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_63391 0 0 0 0 2 LMX1B chr9:129455803 3'AG 129455803 Downstream 5bp
chr9 129455807 129455807 1 + G C BLCA 129455806 + 129455786 129455826 41 CCCTCTCTCTGAGCCAGGTCCGAGAGACACTGGCAGCTGAG CCCTCTCTCTGAGCCAGGTCCCAGAGACACTGGCAGCTGAG < 41bp 0.756057869209005 0.42883190260276 0.85914755 0.67802465 prediction 0.51211573841801 Functional Loss - LMX1B ENSG00000136944 CDS Human protein_coding chr9:129455806 chr9:129455807 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_63391 0 0 0 0 2 LMX1B chr9:129455880 5'GT 129455880 Upstream 74bp
chr19 41597775 41597775 1 + C T GBM 41597773 + 41597753 41597793 41 CACGCTGGATCCCAATTCCCCACGGGACTTCATCGACTCCT CACGCTGGATCCCAATTCCCCATGGGACTTCATCGACTCCT < 41bp 0.761752628034961 0.505695579642921 0.34270495 0.17946053 prediction 0.51211409678408 Functional Loss - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41597773 chr19:41597775 nonsynonymous SNV 0.709 1 23 hm5C_associated_SNPs_63392 0 0 0 0 1 CYP2A13 chr19:41597813 5'GT 41597813 Upstream 39bp
chr2 29259485 29259485 1 + A T UCEC 29259481 + 29259461 29259501 41 TGGGCGCTGGAGTCCTTCGCCAAGATGATCCCCCTCCTCAG TGGGCGCTGGAGTCCTTCGCCAAGTTGATCCCCCTCCTCAG < 41bp 0.857744223326352 0.601690491739474 0.76401067 0.87719804 prediction 0.512107463173755 Functional Loss - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29259481 chr2:29259485 nonsynonymous SNV 0.637 1 25 hm5C_associated_SNPs_63393 0 0 0 0 1 TOGARAM2 chr2:29259407 3'AG 29259407 Downstream 79bp
chr19 39912892 39912892 1 + G T LUSC 39912890 + 39912870 39912910 41 CCTCAATCACTGAAGAAATCCTGGAACTGCTGAATCAGCGA CCTCAATCACTGAAGAAATCCTTGAACTGCTGAATCAGCGA < 41bp 0.756049166825666 0.420729778150277 0.40859163 0.17298222 prediction 0.512098333651333 Functional Loss - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39912890 chr19:39912892 synonymous SNV . 0 23 hm5C_associated_SNPs_63394 0 0 1 0 1 PLEKHG2 chr19:39912928 5'GT 39912928 Upstream 37bp
chr1 156851306 156851306 1 + G T COAD 156851303 + 156851283 156851323 41 AGCGGCCACGTGCCTGCCCACCAGAGGTCTACGCCATCATG AGCGGCCACGTGCCTGCCCACCATAGGTCTACGCCATCATG < 41bp 0.756048931355038 0.377139056521386 0.7848569 0.08196923 prediction 0.512097862710076 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156851303 chr1:156851306 stopgain 0.996 1 24 hm5C_associated_SNPs_63395 0 0 0 0 1 NTRK1 chr1:156851249 3'AG 156851249 Downstream 58bp
chr20 30065655 30065655 1 + C T COAD 30065653 + 30065633 30065673 41 GATGTATATGAGAGGACCCTCACGGTGGATGGAGAAGACAC GATGTATATGAGAGGACCCTCATGGTGGATGGAGAAGACAC < 41bp 0.778076558380721 0.522029667553804 0.24413964 0.31928545 prediction 0.512093781653836 Functional Loss - REM1 ENSG00000088320 CDS Human protein_coding chr20:30065653 chr20:30065655 nonsynonymous SNV 0.985 0 23 hm5C_associated_SNPs_63396 0 0 0 0 2 REM1 chr20:30065631 3'AG 30065631 Downstream 25bp
chr20 30065655 30065655 1 + C T COAD 30065653 + 30065633 30065673 41 GATGTATATGAGAGGACCCTCACGGTGGATGGAGAAGACAC GATGTATATGAGAGGACCCTCATGGTGGATGGAGAAGACAC < 41bp 0.778076558380721 0.522029667553804 0.24413964 0.31928545 prediction 0.512093781653836 Functional Loss - REM1 ENSG00000088320 CDS Human protein_coding chr20:30065653 chr20:30065655 nonsynonymous SNV 0.985 0 23 hm5C_associated_SNPs_63396 0 0 0 0 2 REM1 chr20:30065713 5'GT 30065713 Upstream 59bp
chr16 90106746 90106746 1 - C G rs61734731 90106750 - 90106730 90106770 41 CTGCTGCACCTCCTGGATGGCTGCGGTGAACTTCCGATAGA CTGCTGCACCTCCTGGATGGCTGCCGTGAACTTCCGATAGA < 41bp 0.756037480463561 0.476939065474632 0.26936656 0.12692198 prediction 0.512074960927122 Functional Loss - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90106750 chr16:90106746 synonymous SNV . 0 25 hm5C_associated_SNPs_63398 0 0 0 0 1 GAS8 chr16:90106825 3'AG 90106825 Downstream 80bp
chr4 189357923 189357923 1 + A C rs314044 189357919 + 189357899 189357939 41 ATATGAAAAGAGGAAATATGCATGAATGCCCGCACGGAGAA ATATGAAAAGAGGAAATATGCATGCATGCCCGCACGGAGAA < 41bp 0.756019600023143 0.416417656870315 0.26207656 0.3615045 prediction 0.512039200046287 Functional Loss - TRIML1;LINC01060 ENSG00000249378 ncRNA_exonic Human lincRNA chr4:189357919 chr4:189357923 . . 0 25 hm5C_associated_SNPs_63403 0 0 0 1 1 TRIML1;LINC01060 chr4:189357858 3'AG 189357858 Downstream 66bp
chr2 238990768 238990768 1 + C T UCEC 238990766 + 238990746 238990786 41 CTACCTCCCATCCTCGTGCACACGGATGCTGCACAGGCCTT CTACCTCCCATCCTCGTGCACATGGATGCTGCACAGGCCTT < 41bp 0.763272714252731 0.507254668081158 0.17732003 0.31424302 prediction 0.512036092343146 Functional Loss - SCLY ENSG00000132330 CDS Human protein_coding chr2:238990766 chr2:238990768 nonsynonymous SNV 0.461 5 23 hm5C_associated_SNPs_63404 0 0 1 0 2 SCLY chr2:238990686 3'AG 238990686 Downstream 83bp
chr2 238990768 238990768 1 + C T UCEC 238990766 + 238990746 238990786 41 CTACCTCCCATCCTCGTGCACACGGATGCTGCACAGGCCTT CTACCTCCCATCCTCGTGCACATGGATGCTGCACAGGCCTT < 41bp 0.763272714252731 0.507254668081158 0.17732003 0.31424302 prediction 0.512036092343146 Functional Loss - SCLY ENSG00000132330 CDS Human protein_coding chr2:238990766 chr2:238990768 nonsynonymous SNV 0.461 5 23 hm5C_associated_SNPs_63404 0 0 1 0 2 SCLY chr2:238990850 5'GT 238990850 Upstream 83bp
chr1 156169978 156169978 1 + G T LUAD 156169975 + 156169955 156169995 41 AGAGTAACACAGTCAAATCACTGGTGGCTGGTGGCTCAGCC AGAGTAACACAGTCAAATCACTGTTGGCTGGTGGCTCAGCC < 41bp 0.756012318563607 0.363359487965993 0.4489007 0.19357255 prediction 0.512024637127214 Functional Loss - SLC25A44 ENSG00000160785 CDS Human protein_coding chr1:156169975 chr1:156169978 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_63407 0 0 1 0 1 SLC25A44 chr1:156170019 5'GT 156170019 Upstream 42bp
chr6 44275060 44275060 1 - G A COAD 44275062 - 44275042 44275082 41 GGCGCACAGACACAGCGTACCGCGTGGTGGCTGACCACATC GGCGCACAGACACAGCGTACCGTGTGGTGGCTGACCACATC < 41bp 0.769573034264159 0.513562902101612 0.39202952 0.3227201 prediction 0.512020264325094 Functional Loss - AARS2 ENSG00000124608 CDS Human protein_coding chr6:44275062 chr6:44275060 synonymous SNV . 0 23 hm5C_associated_SNPs_63410 1 0 0 0 2 AARS2 chr6:44274986 5'GT 44274986 Upstream 75bp
chr6 44275060 44275060 1 - G A COAD 44275062 - 44275042 44275082 41 GGCGCACAGACACAGCGTACCGCGTGGTGGCTGACCACATC GGCGCACAGACACAGCGTACCGTGTGGTGGCTGACCACATC < 41bp 0.769573034264159 0.513562902101612 0.39202952 0.3227201 prediction 0.512020264325094 Functional Loss - AARS2 ENSG00000124608 CDS Human protein_coding chr6:44275062 chr6:44275060 synonymous SNV . 0 23 hm5C_associated_SNPs_63410 1 0 0 0 2 AARS2 chr6:44275131 3'AG 44275131 Downstream 72bp
chr18 31322891 31322891 1 + A T LUAD 31322887 + 31322867 31322907 41 ATTGGGCCACCTTTTATAATCAAGAGCCAACCAGTCTCCAA ATTGGGCCACCTTTTATAATCAAGTGCCAACCAGTCTCCAA < 41bp 0.756001303075934 0.452306490848324 0.5932455 0.5855679 prediction 0.512002606151867 Functional Loss - ASXL3 ENSG00000141431 CDS Human protein_coding chr18:31322887 chr18:31322891 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_63412 0 0 0 0 1 ASXL3 chr18:31322852 3'AG 31322852 Downstream 40bp
chr1 110018254 110018254 1 + G T UCEC 110018252 + 110018232 110018272 41 TGGCTCCTACAGCGGGGAGACAGGAGCAATGGTTCGCTGCA TGGCTCCTACAGCGGGGAGACATGAGCAATGGTTCGCTGCA < 41bp 0.890384868971311 0.634384914977711 0.9127914 0.82767904 prediction 0.511999907987198 Functional Loss - SYPL2 ENSG00000143028 CDS Human protein_coding chr1:110018252 chr1:110018254 stopgain 0.992 0 23 hm5C_associated_SNPs_63413 0 0 0 0 2 SYPL2 chr1:110018203 3'AG 110018203 Downstream 52bp
chr1 110018254 110018254 1 + G T UCEC 110018252 + 110018232 110018272 41 TGGCTCCTACAGCGGGGAGACAGGAGCAATGGTTCGCTGCA TGGCTCCTACAGCGGGGAGACATGAGCAATGGTTCGCTGCA < 41bp 0.890384868971311 0.634384914977711 0.9127914 0.82767904 prediction 0.511999907987198 Functional Loss - SYPL2 ENSG00000143028 CDS Human protein_coding chr1:110018252 chr1:110018254 stopgain 0.992 0 23 hm5C_associated_SNPs_63413 0 0 0 0 2 SYPL2 chr1:110018327 5'GT 110018327 Upstream 74bp
chr11 34162015 34162015 1 + C T COAD 34162013 + 34161993 34162033 41 GAAGCGGCTGGAGATGTATTCACGGAATATGGTGGACTATC GAAGCGGCTGGAGATGTATTCATGGAATATGGTGGACTATC < 41bp 0.791646937146942 0.535657389366272 0.8192729 0.83801407 prediction 0.511979095561338 Functional Loss - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34162013 chr11:34162015 nonsynonymous SNV 0.994 1 23 hm5C_associated_SNPs_63416 0 0 1 0 1 NAT10 chr11:34161947 3'AG 34161947 Downstream 69bp
chr1 52879660 52879660 1 + G T UCEC 52879657 + 52879637 52879677 41 GAGGAGTAGGAGCCGGTCTCCCAGAAGGTAAAGCCTAGTCA GAGGAGTAGGAGCCGGTCTCCCATAAGGTAAAGCCTAGTCA < 41bp 0.755988335858641 0.373180199169737 0.38656723 0.13803956 prediction 0.511976671717282 Functional Loss - PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52879657 chr1:52879660 nonsynonymous SNV 0.883 1 24 hm5C_associated_SNPs_63417 0 0 1 0 1 PRPF38A chr1:52879663 5'GT 52879663 Upstream 4bp
chr6 41303577 41303577 1 + A T LIHC 41303573 + 41303553 41303593 41 AATTCCCTCTCCCCAGTCTTCTCCAGGTGTCCCCTCCCATG AATTCCCTCTCCCCAGTCTTCTCCTGGTGTCCCCTCCCATG < 41bp 0.755984645511563 0.49874948689994 0.9164605 0.0660772 prediction 0.511969291023125 Functional Loss - NCR2 ENSG00000096264 UTR5 Human protein_coding chr6:41303573 chr6:41303577 . . 0 25 hm5C_associated_SNPs_63419 0 0 0 0 1 NCR2 chr6:41303666 5'GT 41303666 Upstream 90bp
chr15 41105093 41105093 1 + C T COAD 41105091 + 41105071 41105111 41 CCATGCTGCGGGGACAGGACCCCGAGAGAGGTGAAGGCTGG CCATGCTGCGGGGACAGGACCCTGAGAGAGGTGAAGGCTGG < 41bp 0.755976523463815 0.492524350192661 0.44623843 0.3206789 prediction 0.511953046927631 Functional Loss - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105091 chr15:41105093 synonymous SNV . 0 23 hm5C_associated_SNPs_63421 0 0 0 0 1 ZFYVE19 chr15:41105100 5'GT 41105100 Upstream 8bp
chr5 153830749 153830749 1 + C T UCEC 153830747 + 153830727 153830767 41 GTGACGATGGCGGAGATTCTCCCGAGCACGACACTGACATT GTGACGATGGCGGAGATTCTCCTGAGCACGACACTGACATT < 41bp 0.755974027999505 0.486336613697448 0.4352021 0.2960071 prediction 0.511948055999009 Functional Loss - SAP30L ENSG00000164576 CDS Human protein_coding chr5:153830747 chr5:153830749 synonymous SNV . 0 23 hm5C_associated_SNPs_63424 0 0 1 2 2 SAP30L chr5:153830651 3'AG 153830651 Downstream 99bp
chr5 153830749 153830749 1 + C T UCEC 153830747 + 153830727 153830767 41 GTGACGATGGCGGAGATTCTCCCGAGCACGACACTGACATT GTGACGATGGCGGAGATTCTCCTGAGCACGACACTGACATT < 41bp 0.755974027999505 0.486336613697448 0.4352021 0.2960071 prediction 0.511948055999009 Functional Loss - SAP30L ENSG00000164576 CDS Human protein_coding chr5:153830747 chr5:153830749 synonymous SNV . 0 23 hm5C_associated_SNPs_63424 0 0 1 2 2 SAP30L chr5:153830773 5'GT 153830773 Upstream 25bp
chrX 37665784 37665784 1 + C T BRCA 37665782 + 37665762 37665802 41 CCTCACTGGCTGGGATGAGTCTCAGGTAAGGACAAGACTCC CCTCACTGGCTGGGATGAGTCTTAGGTAAGGACAAGACTCC < 41bp 0.800609264244332 0.544638549185823 0.22629964 0.23793748 prediction 0.51194143011702 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37665782 chrX:37665784 stopgain 0.996 1 23 hm5C_associated_SNPs_63425 0 0 0 0 1 CYBB chrX:37665786 5'GT 37665786 Upstream 3bp
chr17 36288293 36288293 1 + A C ESCA 36288289 + 36288269 36288309 41 GAAATGAAGTTGAAAAACCCCGGAAGATACCAGGTACGCTC GAAATGAAGTTGAAAAACCCCGGACGATACCAGGTACGCTC < 41bp 0.755967121452434 0.372803817888141 0.36338872 0.26360533 prediction 0.511934242904868 Functional Loss - TBC1D3;TBC1D3C;TBC1D3D;TBC1D3E;TBC1D3F;TBC1D3G;TBC1D3H;TBC1D3I;TBC1D3K;TBC1D3L ENSG00000185128 CDS Human other chr17:36288289 chr17:36288293 synonymous SNV . 0 25 hm5C_associated_SNPs_63426 0 0 1 2 2 TBC1D3;TBC1D3C;TBC1D3D;TBC1D3E;TBC1D3F;TBC1D3G;TBC1D3H;TBC1D3I;TBC1D3K;TBC1D3L chr17:36288194 3'AG 36288194 Downstream 100bp
chr17 36288293 36288293 1 + A C ESCA 36288289 + 36288269 36288309 41 GAAATGAAGTTGAAAAACCCCGGAAGATACCAGGTACGCTC GAAATGAAGTTGAAAAACCCCGGACGATACCAGGTACGCTC < 41bp 0.755967121452434 0.372803817888141 0.36338872 0.26360533 prediction 0.511934242904868 Functional Loss - TBC1D3;TBC1D3C;TBC1D3D;TBC1D3E;TBC1D3F;TBC1D3G;TBC1D3H;TBC1D3I;TBC1D3K;TBC1D3L ENSG00000185128 CDS Human other chr17:36288289 chr17:36288293 synonymous SNV . 0 25 hm5C_associated_SNPs_63426 0 0 1 2 2 TBC1D3;TBC1D3C;TBC1D3D;TBC1D3E;TBC1D3F;TBC1D3G;TBC1D3H;TBC1D3I;TBC1D3K;TBC1D3L chr17:36288301 5'GT 36288301 Upstream 9bp
chr20 44333170 44333170 1 - T G UCEC 44333174 - 44333154 44333194 41 CCACAGAAGGAGGAACAGCACTGAAATCCTTTCTCGCAATC CCACAGAAGGAGGAACAGCACTGACATCCTTTCTCGCAATC < 41bp 0.755956611202723 0.385620036756102 0.22846836 0.15086329 prediction 0.511913222405446 Functional Loss - WFDC10B;WFDC13 ENSG00000168634;ENSG00000182931 CDS Human other chr20:44333174 chr20:44333170 nonsynonymous SNV 0.831 2 25 hm5C_associated_SNPs_63430 0 0 0 0 2 WFDC10B;WFDC13 chr20:44333136 5'GT 44333136 Upstream 35bp
chr20 44333170 44333170 1 - T G UCEC 44333174 - 44333154 44333194 41 CCACAGAAGGAGGAACAGCACTGAAATCCTTTCTCGCAATC CCACAGAAGGAGGAACAGCACTGACATCCTTTCTCGCAATC < 41bp 0.755956611202723 0.385620036756102 0.22846836 0.15086329 prediction 0.511913222405446 Functional Loss - WFDC10B;WFDC13 ENSG00000168634;ENSG00000182931 CDS Human other chr20:44333174 chr20:44333170 nonsynonymous SNV 0.831 2 25 hm5C_associated_SNPs_63430 0 0 0 0 2 WFDC10B;WFDC13 chr20:44333200 3'AG 44333200 Downstream 31bp
chr20 29960684 29960684 1 + G T LUSC 29960682 + 29960662 29960702 41 TATAGTGGTGAAAAAAAATGCTGGAACAGATCAGGGCACTG TATAGTGGTGAAAAAAAATGCTTGAACAGATCAGGGCACTG < 41bp 0.854121010465671 0.598181098541301 0.19334885 0.027345806 prediction 0.51187982384874 Functional Loss - DEFB118 ENSG00000131068 CDS Human protein_coding chr20:29960682 chr20:29960684 nonsynonymous SNV 0.049 0 23 hm5C_associated_SNPs_63435 0 0 0 0 1 DEFB118 chr20:29960660 3'AG 29960660 Downstream 25bp
chr7 100187844 100187844 1 + C T LUSC 100187842 + 100187822 100187862 41 CAGTCAGAGACCTTGTTGCCCTCGGCCAGACCTGCCGCTAC CAGTCAGAGACCTTGTTGCCCTTGGCCAGACCTGCCGCTAC < 41bp 0.771673278656523 0.51573354058207 0.2153194 0.17864975 prediction 0.511879476148906 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100187842 chr7:100187844 synonymous SNV . 0 23 hm5C_associated_SNPs_63436 0 0 0 0 1 FBXO24 chr7:100187797 3'AG 100187797 Downstream 48bp
chr4 75167443 75167443 1 + C T SKCM 75167441 + 75167421 75167461 41 AAAGAAAGCTGGCTTTATCACTCCAGTTCCAGGAGGTGTGG AAAGAAAGCTGGCTTTATCACTTCAGTTCCAGGAGGTGTGG < 41bp 0.755938848957459 0.485839483155281 0.90017337 0.13091546 prediction 0.511877697914918 Functional Loss - MTHFD2L ENSG00000163738 CDS Human protein_coding chr4:75167441 chr4:75167443 nonsynonymous SNV 0.956 5 23 hm5C_associated_SNPs_63437 0 0 1 0 1 MTHFD2L chr4:75167414 3'AG 75167414 Downstream 30bp
chr19 50547988 50547988 1 + G T LUAD 50547986 + 50547966 50548006 41 TCTTCGAAGAAGGATTCTCCCAGGAGATTATAGAGATGTTA TCTTCGAAGAAGGATTCTCCCATGAGATTATAGAGATGTTA < 41bp 0.865197533089442 0.609259341549259 0.86499965 0.20497042 prediction 0.511876383080365 Functional Loss - ZNF473 ENSG00000142528 CDS Human protein_coding chr19:50547986 chr19:50547988 nonsynonymous SNV 0.391 2 23 hm5C_associated_SNPs_63438 0 0 1 0 1 ZNF473 chr19:50547927 3'AG 50547927 Downstream 62bp
chr5 131647925 131647925 1 + C T rs11568511 131647923 + 131647903 131647943 41 TGTTCTTCGTAGGCGTGCTCCTCGGCTCCTTCGTGTCCGGG TGTTCTTCGTAGGCGTGCTCCTTGGCTCCTTCGTGTCCGGG < 41bp 0.788082747960109 0.53214466558907 0.08349842 0.030486375 prediction 0.511876164742078 Functional Loss - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131647923 chr5:131647925 synonymous SNV . 0 23 hm5C_associated_SNPs_63439 0 0 0 0 2 SLC22A4 chr5:131647854 3'AG 131647854 Downstream 72bp
chr5 131647925 131647925 1 + C T rs11568511 131647923 + 131647903 131647943 41 TGTTCTTCGTAGGCGTGCTCCTCGGCTCCTTCGTGTCCGGG TGTTCTTCGTAGGCGTGCTCCTTGGCTCCTTCGTGTCCGGG < 41bp 0.788082747960109 0.53214466558907 0.08349842 0.030486375 prediction 0.511876164742078 Functional Loss - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131647923 chr5:131647925 synonymous SNV . 0 23 hm5C_associated_SNPs_63439 0 0 0 0 2 SLC22A4 chr5:131647957 5'GT 131647957 Upstream 33bp
chr12 110566905 110566905 1 + G T HNSC 110566903 + 110566883 110566923 41 AGGTACCAAGTGAGTTTCTTCAGGATGAAACTGTGGCTGAC AGGTACCAAGTGAGTTTCTTCATGATGAAACTGTGGCTGAC < 41bp 0.848890986534755 0.592956401131239 0.8804722 0.07691249 prediction 0.511869170807031 Functional Loss - IFT81 ENSG00000122970 CDS Human protein_coding chr12:110566903 chr12:110566905 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_63440 0 0 1 0 1 IFT81 chr12:110566935 5'GT 110566935 Upstream 31bp
chr3 133167476 133167476 1 + G T LUSC 133167473 + 133167453 133167493 41 AGAAGAACTTGGCTCTCTATCAAGAAACTATGAAGAGGTAG AGAAGAACTTGGCTCTCTATCAATAAACTATGAAGAGGTAG < 41bp 0.755934210397067 0.395236665600143 0.9192933 0.27081117 prediction 0.511868420794134 Functional Loss - BFSP2 ENSG00000170819 CDS Human protein_coding chr3:133167473 chr3:133167476 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_63441 0 0 0 0 1 BFSP2 chr3:133167489 5'GT 133167489 Upstream 14bp
chr8 81426166 81426166 1 + C T LUSC 81426164 + 81426144 81426184 41 GATTTAGATGGTGCTCTACTCTCGGGGCCAGATGGTGATAG GATTTAGATGGTGCTCTACTCTTGGGGCCAGATGGTGATAG < 41bp 0.789012934204639 0.53308244625028 0.33825272 0.17849135 prediction 0.511860975908718 Functional Loss - ZBTB10 ENSG00000205189 CDS Human protein_coding chr8:81426164 chr8:81426166 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_63443 0 0 1 0 3 ZBTB10 chr8:81426145 3'AG 81426145 Downstream 22bp
chr8 81426166 81426166 1 + C T LUSC 81426164 + 81426144 81426184 41 GATTTAGATGGTGCTCTACTCTCGGGGCCAGATGGTGATAG GATTTAGATGGTGCTCTACTCTTGGGGCCAGATGGTGATAG < 41bp 0.789012934204639 0.53308244625028 0.33825272 0.17849135 prediction 0.511860975908718 Functional Loss - ZBTB10 ENSG00000205189 CDS Human protein_coding chr8:81426164 chr8:81426166 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_63443 0 0 1 0 3 ZBTB10 chr8:81426151 3'AG 81426151 Downstream 16bp
chr8 81426166 81426166 1 + C T LUSC 81426164 + 81426144 81426184 41 GATTTAGATGGTGCTCTACTCTCGGGGCCAGATGGTGATAG GATTTAGATGGTGCTCTACTCTTGGGGCCAGATGGTGATAG < 41bp 0.789012934204639 0.53308244625028 0.33825272 0.17849135 prediction 0.511860975908718 Functional Loss - ZBTB10 ENSG00000205189 CDS Human protein_coding chr8:81426164 chr8:81426166 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_63443 0 0 1 0 3 ZBTB10 chr8:81426243 5'GT 81426243 Upstream 78bp
chr17 73809956 73809956 1 + C T UCEC 73809954 + 73809934 73809974 41 GCACCGAGCAGCAGTTCCACCCCGAGGTGGGCCCCACAGCA GCACCGAGCAGCAGTTCCACCCTGAGGTGGGCCCCACAGCA < 41bp 0.755929723081894 0.48804331554431 0.34624302 0.27176046 prediction 0.511859446163788 Functional Loss - UNK ENSG00000132478 CDS Human protein_coding chr17:73809954 chr17:73809956 synonymous SNV . 0 23 hm5C_associated_SNPs_63444 0 0 1 0 1 UNK chr17:73809959 5'GT 73809959 Upstream 4bp
chr20 10032408 10032408 1 + G T UCEC 10032406 + 10032386 10032426 41 TGTTGAGCTTCTTGTTGAATCTGGAGCTTTAATAGATGCAG TGTTGAGCTTCTTGTTGAATCTTGAGCTTTAATAGATGCAG < 41bp 0.867122510222511 0.611197376618977 0.16282976 0.07350668 prediction 0.511850267207069 Functional Loss - ANKEF1 ENSG00000132623 CDS Human protein_coding chr20:10032406 chr20:10032408 stopgain 0.930 1 23 hm5C_associated_SNPs_63446 0 0 1 0 1 ANKEF1 chr20:10032311 3'AG 10032311 Downstream 98bp
chr17 8222389 8222389 1 + G T LUSC 8222386 + 8222366 8222406 41 TGGTCCAGGCCCAGCAGGTTCCGGATCCATCTGGACCCCCT TGGTCCAGGCCCAGCAGGTTCCGTATCCATCTGGACCCCCT < 41bp 0.755923543250596 0.355913010499165 0.893602 0.19714257 prediction 0.511847086501192 Functional Loss - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8222386 chr17:8222389 nonsynonymous SNV 0.957 5 24 hm5C_associated_SNPs_63448 0 0 0 0 2 ARHGEF15 chr17:8222325 3'AG 8222325 Downstream 65bp
chr17 8222389 8222389 1 + G T LUSC 8222386 + 8222366 8222406 41 TGGTCCAGGCCCAGCAGGTTCCGGATCCATCTGGACCCCCT TGGTCCAGGCCCAGCAGGTTCCGTATCCATCTGGACCCCCT < 41bp 0.755923543250596 0.355913010499165 0.893602 0.19714257 prediction 0.511847086501192 Functional Loss - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8222386 chr17:8222389 nonsynonymous SNV 0.957 5 24 hm5C_associated_SNPs_63448 0 0 0 0 2 ARHGEF15 chr17:8222477 5'GT 8222477 Upstream 89bp
chr15 91827399 91827399 1 + G T COAD 91827396 + 91827376 91827416 41 GGCAGCCTGTCTGTCTTACCCGGGAACATCATTTCTGCCCT GGCAGCCTGTCTGTCTTACCCGGTAACATCATTTCTGCCCT < 41bp 0.907591621859885 0.65168770279938 0.9100965 0.5566823 prediction 0.51180783812101 Functional Loss - SV2B ENSG00000185518 CDS Human protein_coding chr15:91827396 chr15:91827399 synonymous SNV . 0 24 hm5C_associated_SNPs_63450 0 0 0 0 1 SV2B chr15:91827451 5'GT 91827451 Upstream 53bp
chr13 113772770 113772770 1 + G T SARC 113772768 + 113772748 113772788 41 ACGACGGGGATGAGCAGAGCCGGCGGGTGGCGCAGGTCATC ACGACGGGGATGAGCAGAGCCGTCGGGTGGCGCAGGTCATC < 41bp 0.884798944594934 0.628895551700501 0.89783514 0.8174529 prediction 0.511806785788867 Functional Loss - F7 ENSG00000057593 CDS Human protein_coding chr13:113772768 chr13:113772770 synonymous SNV . 0 23 hm5C_associated_SNPs_63451 0 0 0 0 1 F7 chr13:113772727 3'AG 113772727 Downstream 44bp
chr11 117066565 117066565 1 + C T rs139635942 117066563 + 117066543 117066583 41 ACAACCGGGACTGCATCCTCCTCGACTTCTTTGACGACCAC ACAACCGGGACTGCATCCTCCTTGACTTCTTTGACGACCAC < 41bp 0.820868090510835 0.564965085854751 0.44461557 0.09646329 prediction 0.511806009312167 Functional Loss - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117066563 chr11:117066565 synonymous SNV . 0 23 hm5C_associated_SNPs_63452 0 0 1 0 2 SIDT2 chr11:117066518 3'AG 117066518 Downstream 48bp
chr11 117066565 117066565 1 + C T rs139635942 117066563 + 117066543 117066583 41 ACAACCGGGACTGCATCCTCCTCGACTTCTTTGACGACCAC ACAACCGGGACTGCATCCTCCTTGACTTCTTTGACGACCAC < 41bp 0.820868090510835 0.564965085854751 0.44461557 0.09646329 prediction 0.511806009312167 Functional Loss - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117066563 chr11:117066565 synonymous SNV . 0 23 hm5C_associated_SNPs_63452 0 0 1 0 2 SIDT2 chr11:117066631 5'GT 117066631 Upstream 67bp
chr8 56435862 56435862 1 + C T SKCM 56435860 + 56435840 56435880 41 GTTTCACAGCGGCAGCTTCCCTCGTGTCCCTGGCCTGGGCC GTTTCACAGCGGCAGCTTCCCTTGTGTCCCTGGCCTGGGCC < 41bp 0.755902934556242 0.49581470017633 0.23906618 0.14871189 prediction 0.511805869112484 Functional Loss - XKR4 ENSG00000206579 CDS Human protein_coding chr8:56435860 chr8:56435862 synonymous SNV . 0 23 hm5C_associated_SNPs_63453 0 0 0 0 1 XKR4 chr8:56435840 3'AG 56435840 Downstream 23bp
chr10 7763668 7763668 1 + G T LUSC 7763666 + 7763646 7763686 41 AGAGAATATGCCCTAACTGCCGGGAGACTGCGGTAGATGGG AGAGAATATGCCCTAACTGCCGTGAGACTGCGGTAGATGGG < 41bp 0.88678987686414 0.630893643769002 0.89606833 0.29252034 prediction 0.511792466190275 Functional Loss - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7763666 chr10:7763668 synonymous SNV . 0 23 hm5C_associated_SNPs_63457 0 0 1 0 2 ITIH2 chr10:7763612 3'AG 7763612 Downstream 57bp
chr10 7763668 7763668 1 + G T LUSC 7763666 + 7763646 7763686 41 AGAGAATATGCCCTAACTGCCGGGAGACTGCGGTAGATGGG AGAGAATATGCCCTAACTGCCGTGAGACTGCGGTAGATGGG < 41bp 0.88678987686414 0.630893643769002 0.89606833 0.29252034 prediction 0.511792466190275 Functional Loss - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7763666 chr10:7763668 synonymous SNV . 0 23 hm5C_associated_SNPs_63457 0 0 1 0 2 ITIH2 chr10:7763740 5'GT 7763740 Upstream 73bp
chr6 88136336 88136336 1 + G C BLCA 88136332 + 88136312 88136352 41 ACTAAAAATGACCATAAAATCAAAGATAGCGGTCCCAACAT ACTAAAAATGACCATAAAATCAAACATAGCGGTCCCAACAT < 41bp 0.755890503077075 0.481370970554186 0.4098372 0.14225158 prediction 0.511781006154151 Functional Loss - CFAP206 ENSG00000213204;ENSG00000272514 CDS Human other chr6:88136332 chr6:88136336 nonsynonymous SNV 0.955 4 25 hm5C_associated_SNPs_63458 0 0 0 0 2 CFAP206 chr6:88136244 3'AG 88136244 Downstream 93bp
chr6 88136336 88136336 1 + G C BLCA 88136332 + 88136312 88136352 41 ACTAAAAATGACCATAAAATCAAAGATAGCGGTCCCAACAT ACTAAAAATGACCATAAAATCAAACATAGCGGTCCCAACAT < 41bp 0.755890503077075 0.481370970554186 0.4098372 0.14225158 prediction 0.511781006154151 Functional Loss - CFAP206 ENSG00000213204;ENSG00000272514 CDS Human other chr6:88136332 chr6:88136336 nonsynonymous SNV 0.955 4 25 hm5C_associated_SNPs_63458 0 0 0 0 2 CFAP206 chr6:88136363 5'GT 88136363 Upstream 28bp
chr1 16101153 16101153 1 + G T THCA 16101151 + 16101131 16101171 41 GGCAAGTGTGGCGAGGTGGTCCGGGACCACATCATCAGGGC GGCAAGTGTGGCGAGGTGGTCCTGGACCACATCATCAGGGC < 41bp 0.755876572144417 0.393846310553478 0.90292346 0.39547545 prediction 0.511753144288835 Functional Loss - FBLIM1 ENSG00000162458 CDS Human protein_coding chr1:16101151 chr1:16101153 nonsynonymous SNV 0.969 1 23 hm5C_associated_SNPs_63461 0 0 0 0 1 FBLIM1 chr1:16101113 3'AG 16101113 Downstream 41bp
chr3 99979901 99979901 1 + G C BRCA 99979900 + 99979880 99979920 41 TGTGCCGCCGCTGCCAACGTCGAGCGGCGACGGCTGGTGAG TGTGCCGCCGCTGCCAACGTCCAGCGGCGACGGCTGGTGAG < 41bp 0.824088559456001 0.568228454892585 0.8499131 0.43007225 prediction 0.511720209126833 Functional Loss - TBC1D23 ENSG00000036054 CDS Human protein_coding chr3:99979900 chr3:99979901 synonymous SNV . 0 22 hm5C_associated_SNPs_63464 0 0 1 0 1 TBC1D23 chr3:99979915 5'GT 99979915 Upstream 15bp
chrX 115584233 115584233 1 + G T UCEC 115584230 + 115584210 115584250 41 AGAGGCTCTAGCCCAACTCCCAGGTGGTCCATTTTGGTCCA AGAGGCTCTAGCCCAACTCCCAGTTGGTCCATTTTGGTCCA < 41bp 0.755858236581653 0.363846269379721 0.8889822 0.08866462 prediction 0.511716473163305 Functional Loss - SLC6A14 ENSG00000087916 CDS Human other chrX:115584230 chrX:115584233 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_63466 0 0 1 0 2 SLC6A14 chrX:115584182 3'AG 115584182 Downstream 52bp
chrX 115584233 115584233 1 + G T UCEC 115584230 + 115584210 115584250 41 AGAGGCTCTAGCCCAACTCCCAGGTGGTCCATTTTGGTCCA AGAGGCTCTAGCCCAACTCCCAGTTGGTCCATTTTGGTCCA < 41bp 0.755858236581653 0.363846269379721 0.8889822 0.08866462 prediction 0.511716473163305 Functional Loss - SLC6A14 ENSG00000087916 CDS Human other chrX:115584230 chrX:115584233 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_63466 0 0 1 0 2 SLC6A14 chrX:115584307 5'GT 115584307 Upstream 75bp
chr10 99504646 99504646 1 + C T SKCM 99504644 + 99504624 99504664 41 AGAGAGGTCGCCTGTCTCGTCCCGAGGCCGTGGCTGAGGTG AGAGAGGTCGCCTGTCTCGTCCTGAGGCCGTGGCTGAGGTG < 41bp 0.770574433838504 0.514725317399426 0.28479016 0.13433227 prediction 0.511698232878156 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99504644 chr10:99504646 synonymous SNV . 0 23 hm5C_associated_SNPs_63469 0 0 1 0 1 ZFYVE27 chr10:99504672 5'GT 99504672 Upstream 27bp
chr5 148563152 148563152 1 + G T COAD 148563149 + 148563129 148563169 41 ACATCAGATGCTTCACCTGTCAAGGTAGGAGGCTCAGCTCC ACATCAGATGCTTCACCTGTCAATGTAGGAGGCTCAGCTCC < 41bp 0.755848248453674 0.363244185684464 0.8640518 0.1512891 prediction 0.511696496907348 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148563149 chr5:148563152 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_63470 0 0 0 0 1 ABLIM3 chr5:148563152 5'GT 148563152 Upstream 1bp
chr9 96278474 96278474 1 + C T rs77023914 96278472 + 96278452 96278492 41 CCCAGAGCGGCAGCCCCAACCACGTGGATTCCGCCTACTTC CCCAGAGCGGCAGCCCCAACCATGTGGATTCCGCCTACTTC < 41bp 0.761013788021551 0.50516561564433 0.5596257 0.36702168 prediction 0.511696344754443 Functional Loss - FAM120A ENSG00000048828 CDS Human protein_coding chr9:96278472 chr9:96278474 synonymous SNV . 0 23 hm5C_associated_SNPs_63471 0 0 0 0 1 FAM120A chr9:96278551 5'GT 96278551 Upstream 78bp
chr17 75209483 75209483 1 + C T STAD 75209481 + 75209461 75209501 41 GTGCGCCGCCAGCAGCCTTCCCCGGGTGGACGACGTGCTTG GTGCGCCGCCAGCAGCCTTCCCTGGGTGGACGACGTGCTTG < 41bp 0.761250396520319 0.505407765848198 0.07615563 0.08823693 prediction 0.511685261344243 Functional Loss - SEC14L1 ENSG00000129657 CDS Human protein_coding chr17:75209481 chr17:75209483 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_63472 0 0 0 0 1 SEC14L1 chr17:75209574 5'GT 75209574 Upstream 92bp
chrX 591812 591812 1 + G C LUAD 591811 + 591791 591831 41 TTCCAGCCTCCAGGACATCACGGAGGGCGGCGGCCACTGCC TTCCAGCCTCCAGGACATCACCGAGGGCGGCGGCCACTGCC < 41bp 0.860943575338108 0.60510495043516 0.92788196 0.57318413 prediction 0.511677249805896 Functional Loss - SHOX ENSG00000185960 CDS Human protein_coding chrX:591811 chrX:591812 synonymous SNV . 0 22 hm5C_associated_SNPs_63474 0 0 0 0 1 SHOX chrX:591909 5'GT 591909 Upstream 98bp
chr11 124500738 124500738 1 + C T CESC 124500736 + 124500716 124500756 41 GATCCAGAGCTGTCCAGGAGCTCGAAAATGCATCAAGTAAG GATCCAGAGCTGTCCAGGAGCTTGAAAATGCATCAAGTAAG < 41bp 0.822226405212397 0.566392549717155 0.021382302 0.021330804 prediction 0.511667710990483 Functional Loss - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124500736 chr11:124500738 stopgain 0.991 1 23 hm5C_associated_SNPs_63475 0 0 1 0 2 TBRG1 chr11:124500641 3'AG 124500641 Downstream 98bp
chr11 124500738 124500738 1 + C T CESC 124500736 + 124500716 124500756 41 GATCCAGAGCTGTCCAGGAGCTCGAAAATGCATCAAGTAAG GATCCAGAGCTGTCCAGGAGCTTGAAAATGCATCAAGTAAG < 41bp 0.822226405212397 0.566392549717155 0.021382302 0.021330804 prediction 0.511667710990483 Functional Loss - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124500736 chr11:124500738 stopgain 0.991 1 23 hm5C_associated_SNPs_63475 0 0 1 0 2 TBRG1 chr11:124500751 5'GT 124500751 Upstream 14bp
chr10 3189371 3189371 1 - C A UCEC 3189374 - 3189354 3189394 41 CTGAGGAAGCTCCCGCGTATCAAGAAACACTTGTTAAATGG CTGAGGAAGCTCCCGCGTATCAATAAACACTTGTTAAATGG < 41bp 0.755793200669506 0.373841385596555 0.5431864 0.13317624 prediction 0.511586401339013 Functional Loss - PITRM1 ENSG00000107959 CDS Human protein_coding chr10:3189374 chr10:3189371 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_63480 0 0 1 0 2 PITRM1 chr10:3189342 5'GT 3189342 Upstream 30bp
chr10 3189371 3189371 1 - C A UCEC 3189374 - 3189354 3189394 41 CTGAGGAAGCTCCCGCGTATCAAGAAACACTTGTTAAATGG CTGAGGAAGCTCCCGCGTATCAATAAACACTTGTTAAATGG < 41bp 0.755793200669506 0.373841385596555 0.5431864 0.13317624 prediction 0.511586401339013 Functional Loss - PITRM1 ENSG00000107959 CDS Human protein_coding chr10:3189374 chr10:3189371 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_63480 0 0 1 0 2 PITRM1 chr10:3189442 3'AG 3189442 Downstream 72bp
chr3 51708516 51708516 1 + G C HNSC 51708512 + 51708492 51708532 41 GGTGAGACTGGGCGGCTTTTCACTGAGAGCTGCAGCATCTC GGTGAGACTGGGCGGCTTTTCACTCAGAGCTGCAGCATCTC < 41bp 0.755784015467023 0.475791042553554 0.21327588 0.1030069 prediction 0.511568030934046 Functional Loss - TEX264 ENSG00000164081 CDS Human protein_coding chr3:51708512 chr3:51708516 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_63482 0 0 1 0 1 TEX264 chr3:51708578 5'GT 51708578 Upstream 63bp
chr8 145064280 145064280 1 + G C rs529442056 145064276 + 145064256 145064296 41 CGCAGGCCCAGCTGAGCGGCCGCCGAGCGGGTGCGGGTGCG CGCAGGCCCAGCTGAGCGGCCGCCCAGCGGGTGCGGGTGCG < 41bp 0.768425492507064 0.51265166638322 0.866281 0.26903346 prediction 0.511547652247688 Functional Loss - GRINA ENSG00000178719 UTR5 Human other chr8:145064276 chr8:145064280 . . 0 25 hm5C_associated_SNPs_63487 0 0 1 0 1 GRINA chr8:145064367 5'GT 145064367 Upstream 88bp
chr10 101514376 101514376 1 + C T COAD 101514374 + 101514354 101514394 41 TCTGCTCGGTCTACTAGAGACTCGGGAATGAAGTTTCGGTA TCTGCTCGGTCTACTAGAGACTTGGGAATGAAGTTTCGGTA < 41bp 0.811774209989725 0.556017566603284 0.10018778 0.1692957 prediction 0.511513286772882 Functional Loss - CUTC ENSG00000119929 CDS Human protein_coding chr10:101514374 chr10:101514376 nonsynonymous SNV 0.766 4 23 hm5C_associated_SNPs_63490 0 0 1 0 2 CUTC chr10:101514286 3'AG 101514286 Downstream 91bp
chr10 101514376 101514376 1 + C T COAD 101514374 + 101514354 101514394 41 TCTGCTCGGTCTACTAGAGACTCGGGAATGAAGTTTCGGTA TCTGCTCGGTCTACTAGAGACTTGGGAATGAAGTTTCGGTA < 41bp 0.811774209989725 0.556017566603284 0.10018778 0.1692957 prediction 0.511513286772882 Functional Loss - CUTC ENSG00000119929 CDS Human protein_coding chr10:101514374 chr10:101514376 nonsynonymous SNV 0.766 4 23 hm5C_associated_SNPs_63490 0 0 1 0 2 CUTC chr10:101514391 5'GT 101514391 Upstream 16bp
chr11 73101965 73101965 1 + G T HNSC 73101963 + 73101943 73101983 41 ACTCTGTGGAGACTGCTGGCCTGGGTAAGCCAAAGGGAGTG ACTCTGTGGAGACTGCTGGCCTTGGTAAGCCAAAGGGAGTG < 41bp 0.755751980173917 0.406932128203682 0.34795344 0.1062915 prediction 0.511503960347834 Functional Loss - RELT ENSG00000054967 CDS Human protein_coding chr11:73101963 chr11:73101965 nonsynonymous SNV 0.888 5 23 hm5C_associated_SNPs_63491 0 0 1 0 1 RELT chr11:73101966 5'GT 73101966 Upstream 2bp
chr11 73101966 73101966 1 + G T STAD 73101963 + 73101943 73101983 41 ACTCTGTGGAGACTGCTGGCCTGGGTAAGCCAAAGGGAGTG ACTCTGTGGAGACTGCTGGCCTGTGTAAGCCAAAGGGAGTG < 41bp 0.755751980173917 0.361843494112112 0.34795344 0.14746767 prediction 0.511503960347834 Functional Loss - RELT ENSG00000054967 CDS Human protein_coding chr11:73101963 chr11:73101966 nonsynonymous SNV 0.883 5 24 hm5C_associated_SNPs_63492 0 0 1 0 1 RELT chr11:73101966 5'GT 73101966 Upstream 1bp
chr12 56531129 56531129 1 + C T UCEC 56531127 + 56531107 56531147 41 GCCCCACCTCGACCCTGTCACACGACTCCTGATAGCCAGTT GCCCCACCTCGACCCTGTCACATGACTCCTGATAGCCAGTT < 41bp 0.755744198571818 0.478925820235781 0.35493195 0.41613728 prediction 0.511488397143635 Functional Loss - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56531127 chr12:56531129 nonsynonymous SNV 0.744 4 23 hm5C_associated_SNPs_63493 0 0 1 0 1 ESYT1 chr12:56531157 5'GT 56531157 Upstream 29bp
chr7 100377117 100377117 1 + G T OV 100377114 + 100377094 100377134 41 AGCAGATTCCAGCGGAACAGCAGGAGAACCCGAGTGGAAAC AGCAGATTCCAGCGGAACAGCAGTAGAACCCGAGTGGAAAC < 41bp 0.755734826114599 0.400445548406896 0.9127393 0.49189755 prediction 0.511469652229197 Functional Loss - ZAN ENSG00000146839 CDS Human protein_coding chr7:100377114 chr7:100377117 stopgain 0.002 0 24 hm5C_associated_SNPs_63496 0 0 0 0 1 ZAN chr7:100377068 3'AG 100377068 Downstream 50bp
chr2 63272232 63272232 1 + C T COAD 63272230 + 63272210 63272250 41 AGACCGAGGCCCAGAAGCGACGCGAACAGCTTCTGCTAGAT AGACCGAGGCCCAGAAGCGACGTGAACAGCTTCTGCTAGAT < 41bp 0.804929564242549 0.549194859201882 0.28151646 0.3511965 prediction 0.511469410081334 Functional Loss - EHBP1 ENSG00000115504 CDS Human protein_coding chr2:63272230 chr2:63272232 synonymous SNV . 0 23 hm5C_associated_SNPs_63497 0 0 0 0 2 EHBP1 chr2:63272201 3'AG 63272201 Downstream 32bp
chr2 63272232 63272232 1 + C T COAD 63272230 + 63272210 63272250 41 AGACCGAGGCCCAGAAGCGACGCGAACAGCTTCTGCTAGAT AGACCGAGGCCCAGAAGCGACGTGAACAGCTTCTGCTAGAT < 41bp 0.804929564242549 0.549194859201882 0.28151646 0.3511965 prediction 0.511469410081334 Functional Loss - EHBP1 ENSG00000115504 CDS Human protein_coding chr2:63272230 chr2:63272232 synonymous SNV . 0 23 hm5C_associated_SNPs_63497 0 0 0 0 2 EHBP1 chr2:63272315 5'GT 63272315 Upstream 84bp
chr14 24108409 24108409 1 + A T rs555965971 24108405 + 24108385 24108425 41 CAGGATCGGCTTTGCCATCGCCCGACGTCTGGCCCGGGACG CAGGATCGGCTTTGCCATCGCCCGTCGTCTGGCCCGGGACG < 41bp 0.755733614706891 0.439164171622224 0.35099483 0.110458225 prediction 0.511467229413781 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24108405 chr14:24108409 synonymous SNV . 0 25 hm5C_associated_SNPs_63498 0 0 1 0 1 DHRS2 chr14:24108388 3'AG 24108388 Downstream 22bp
chrX 48545241 48545241 1 + C T BRCA 48545239 + 48545219 48545259 41 GAACCCTGACATCACGAGTTCACGATACCGTGGGCTCCCAG GAACCCTGACATCACGAGTTCATGATACCGTGGGCTCCCAG < 41bp 0.805163016627176 0.549436290561173 0.094077826 0.13823533 prediction 0.511453452132005 Functional Loss - WAS ENSG00000015285 CDS Human protein_coding chrX:48545239 chrX:48545241 stopgain 1.000 1 23 hm5C_associated_SNPs_63503 0 0 0 0 1 WAS chrX:48545170 3'AG 48545170 Downstream 72bp
chr6 42890858 42890858 1 + A C rs200942121 42890854 + 42890834 42890874 41 TGGTGGTGGTCTGCCTGGTCCTTGATGTTGCACCCCCTGGC TGGTGGTGGTCTGCCTGGTCCTTGCTGTTGCACCCCCTGGC < 41bp 0.755721271145181 0.349734892588055 0.10654467 0.11651367 prediction 0.511442542290362 Functional Loss - PTCRA ENSG00000171611 CDS Human protein_coding chr6:42890854 chr6:42890858 nonsynonymous SNV 0.780 3 25 hm5C_associated_SNPs_63505 0 0 0 0 1 PTCRA chr6:42890765 3'AG 42890765 Downstream 94bp
chr3 52817048 52817048 1 + C T SKCM 52817046 + 52817026 52817066 41 TGACCTGGTTCTTTTTGGGACTCGAGTACAATCGTGGAAGG TGACCTGGTTCTTTTTGGGACTTGAGTACAATCGTGGAAGG < 41bp 0.806636957342951 0.550920549593269 0.35093802 0.2396161 prediction 0.511432815499364 Functional Loss - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52817046 chr3:52817048 stopgain 0.530 0 23 hm5C_associated_SNPs_63506 0 0 0 0 1 ITIH1 chr3:52816973 3'AG 52816973 Downstream 76bp
chr17 41006598 41006598 1 + C T SKCM 41006596 + 41006576 41006616 41 TGGAGGAGCAGGCCGCCTTCCTCGTGGGAAGCGCCACCCCT TGGAGGAGCAGGCCGCCTTCCTTGTGGGAAGCGCCACCCCT < 41bp 0.786235042795975 0.530528818344764 0.118638724 0.13878465 prediction 0.511412448902421 Functional Loss - AOC3 ENSG00000131471 CDS Human protein_coding chr17:41006596 chr17:41006598 synonymous SNV . 0 23 hm5C_associated_SNPs_63508 0 0 1 0 1 AOC3 chr17:41006554 3'AG 41006554 Downstream 45bp
chrX 101818654 101818654 1 + G T UCEC 101818651 + 101818631 101818671 41 ATAGAGAAGGCTCCCAAAGTCAAGACCCTGAATCTCTCCAA ATAGAGAAGGCTCCCAAAGTCAATACCCTGAATCTCTCCAA < 41bp 0.910836531399732 0.655142953549045 0.22539341 0.035007566 prediction 0.511387155701373 Functional Loss - NXF4 ENSG00000196970 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:101818651 chrX:101818654 . . 0 24 hm5C_associated_SNPs_63510 0 0 0 1 2 NXF4 chrX:101818571 3'AG 101818571 Downstream 84bp
chrX 101818654 101818654 1 + G T UCEC 101818651 + 101818631 101818671 41 ATAGAGAAGGCTCCCAAAGTCAAGACCCTGAATCTCTCCAA ATAGAGAAGGCTCCCAAAGTCAATACCCTGAATCTCTCCAA < 41bp 0.910836531399732 0.655142953549045 0.22539341 0.035007566 prediction 0.511387155701373 Functional Loss - NXF4 ENSG00000196970 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:101818651 chrX:101818654 . . 0 24 hm5C_associated_SNPs_63510 0 0 0 1 2 NXF4 chrX:101818678 5'GT 101818678 Upstream 25bp
chr8 145617842 145617842 1 + A T COAD 145617838 + 145617818 145617858 41 CCCATGCTGCTGGTGCTGCGCAACATCAACACCGTGCGCGC CCCATGCTGCTGGTGCTGCGCAACTTCAACACCGTGCGCGC < 41bp 0.861411264406818 0.605725122710255 0.182998 0.103587985 prediction 0.511372283393125 Functional Loss - ADCK5 ENSG00000173137 CDS Human protein_coding chr8:145617838 chr8:145617842 nonsynonymous SNV 0.994 2 25 hm5C_associated_SNPs_63511 0 0 0 0 1 ADCK5 chr8:145617912 5'GT 145617912 Upstream 71bp
chr2 121729566 121729566 1 + C T STAD 121729564 + 121729544 121729584 41 AGCAGCACCGTCAACCCTGTCGCCATTCACAAGCGCAGCAA AGCAGCACCGTCAACCCTGTCGTCATTCACAAGCGCAGCAA < 41bp 0.801117764582024 0.545440315289456 0.4338563 0.20930436 prediction 0.511354898585137 Functional Loss - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121729564 chr2:121729566 nonsynonymous SNV 0.359 0 23 hm5C_associated_SNPs_63512 0 0 0 0 2 GLI2 chr2:121729517 3'AG 121729517 Downstream 50bp
chr2 121729566 121729566 1 + C T STAD 121729564 + 121729544 121729584 41 AGCAGCACCGTCAACCCTGTCGCCATTCACAAGCGCAGCAA AGCAGCACCGTCAACCCTGTCGTCATTCACAAGCGCAGCAA < 41bp 0.801117764582024 0.545440315289456 0.4338563 0.20930436 prediction 0.511354898585137 Functional Loss - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121729564 chr2:121729566 nonsynonymous SNV 0.359 0 23 hm5C_associated_SNPs_63512 0 0 0 0 2 GLI2 chr2:121729639 5'GT 121729639 Upstream 74bp
chrX 140953391 140953391 1 + G T LUSC 140953388 + 140953368 140953408 41 GTCCTCTGCCCCACATACTTCAAGGTAAGGACTCTAAGGAA GTCCTCTGCCCCACATACTTCAATGTAAGGACTCTAAGGAA < 41bp 0.755676155576191 0.360200161146417 0.673634 0.110479146 prediction 0.511352311152382 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140953388 chrX:140953391 nonsynonymous SNV 0.004 2 24 hm5C_associated_SNPs_63513 0 0 0 0 1 MAGEC3 chrX:140953391 5'GT 140953391 Upstream 1bp
chr8 80553683 80553683 1 + T C UCEC 80553682 + 80553662 80553702 41 GCTGATCTTGAAGCCACCATCTCCTATCTCAGAAGCCCCAC GCTGATCTTGAAGCCACCATCCCCTATCTCAGAAGCCCCAC < 41bp 0.755661737780906 0.493510056622429 0.32393318 0.14283946 prediction 0.511323475561812 Functional Loss - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80553682 chr8:80553683 synonymous SNV . 0 22 hm5C_associated_SNPs_63515 0 0 0 1 1 STMN2 chr8:80553613 3'AG 80553613 Downstream 71bp
chr20 61938933 61938933 1 + G T LUAD 61938931 + 61938911 61938951 41 GCATTGGCCACAGTCACTTCCAGCAGGTCAAGGACTTCCTG GCATTGGCCACAGTCACTTCCATCAGGTCAAGGACTTCCTG < 41bp 0.75565093282078 0.404543905089607 0.6514468 0.0814687 prediction 0.51130186564156 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61938931 chr20:61938933 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_63519 0 0 1 0 2 COL20A1 chr20:61938842 3'AG 61938842 Downstream 92bp
chr20 61938933 61938933 1 + G T LUAD 61938931 + 61938911 61938951 41 GCATTGGCCACAGTCACTTCCAGCAGGTCAAGGACTTCCTG GCATTGGCCACAGTCACTTCCATCAGGTCAAGGACTTCCTG < 41bp 0.75565093282078 0.404543905089607 0.6514468 0.0814687 prediction 0.51130186564156 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61938931 chr20:61938933 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_63519 0 0 1 0 2 COL20A1 chr20:61939000 5'GT 61939000 Upstream 68bp
chr7 44247777 44247777 1 + G T LUSC 44247774 + 44247754 44247794 41 TGACTAAAGTGCAGGCCGAACTAGATGAGACCAAAATCATT TGACTAAAGTGCAGGCCGAACTATATGAGACCAAAATCATT < 41bp 0.755644116680995 0.372189634866532 0.19082919 0.3912654 prediction 0.511288233361989 Functional Loss - YKT6 ENSG00000106636 CDS Human protein_coding chr7:44247774 chr7:44247777 nonsynonymous SNV 0.685 4 24 hm5C_associated_SNPs_63522 0 0 1 0 2 YKT6 chr7:44247732 3'AG 44247732 Downstream 46bp
chr7 44247777 44247777 1 + G T LUSC 44247774 + 44247754 44247794 41 TGACTAAAGTGCAGGCCGAACTAGATGAGACCAAAATCATT TGACTAAAGTGCAGGCCGAACTATATGAGACCAAAATCATT < 41bp 0.755644116680995 0.372189634866532 0.19082919 0.3912654 prediction 0.511288233361989 Functional Loss - YKT6 ENSG00000106636 CDS Human protein_coding chr7:44247774 chr7:44247777 nonsynonymous SNV 0.685 4 24 hm5C_associated_SNPs_63522 0 0 1 0 2 YKT6 chr7:44247797 5'GT 44247797 Upstream 21bp
chr19 46180329 46180329 1 + G C rs76439420 46180325 + 46180305 46180345 41 CCTGGTGCTCGTGGGAGGCTCCGAGGAGGGCCACTTCCGCT CCTGGTGCTCGTGGGAGGCTCCGACGAGGGCCACTTCCGCT < 41bp 0.755643365336764 0.458247151727815 0.89746594 0.71252495 prediction 0.511286730673528 Functional Loss - GIPR ENSG00000010310 CDS Human protein_coding chr19:46180325 chr19:46180329 nonsynonymous SNV 0.955 4 25 hm5C_associated_SNPs_63523 0 0 1 1 1 GIPR chr19:46180366 5'GT 46180366 Upstream 38bp
chr5 10262622 10262622 1 + C T COAD 10262620 + 10262600 10262640 41 AGGAGGCGAAACGATCCCTTCACGATGCTTTGTGTGTCATC AGGAGGCGAAACGATCCCTTCATGATGCTTTGTGTGTCATC < 41bp 0.823081664521743 0.567442499530484 0.28049457 0.235941 prediction 0.511278329982518 Functional Loss - CCT5 ENSG00000150753 CDS Human protein_coding chr5:10262620 chr5:10262622 synonymous SNV . 0 23 hm5C_associated_SNPs_63526 0 0 1 0 1 CCT5 chr5:10262593 3'AG 10262593 Downstream 30bp
chr20 17417499 17417499 1 + C T STAD 17417497 + 17417477 17417517 41 GGATGGGCCCCGGGAGCTCACGCTGCAGGCCATGGCCGATG GGATGGGCCCCGGGAGCTCACGTTGCAGGCCATGGCCGATG < 41bp 0.755626971569591 0.495272909191959 0.41855094 0.51446676 prediction 0.511253943139181 Functional Loss - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17417497 chr20:17417499 synonymous SNV . 0 23 hm5C_associated_SNPs_63528 0 0 0 0 1 PCSK2 chr20:17417528 5'GT 17417528 Upstream 30bp
chr5 157178402 157178402 1 + C T UCEC 157178400 + 157178380 157178420 41 GTTCTTCTCTTGTTTCAGTGCACGAAGGCAGCCCTCTGGGT GTTCTTCTCTTGTTTCAGTGCATGAAGGCAGCCCTCTGGGT < 41bp 0.810348828184076 0.554724373086063 0.42539385 0.64948815 prediction 0.511248910196027 Functional Loss - LSM11 ENSG00000155858 CDS Human protein_coding chr5:157178400 chr5:157178402 synonymous SNV . 0 23 hm5C_associated_SNPs_63529 0 0 0 0 1 LSM11 chr5:157178398 3'AG 157178398 Downstream 5bp
chr9 111696783 111696783 1 + A C rs138701847 111696779 + 111696759 111696799 41 AGGTCGCCATGGCTACCGAGCCCGAAGCCGCGGAGCCGGTG AGGTCGCCATGGCTACCGAGCCCGCAGCCGCGGAGCCGGTG < 41bp 0.902213629842085 0.646589404446957 0.21242121 0.255633 prediction 0.511248450790256 Functional Loss - FAM206A ENSG00000119328 CDS Human protein_coding chr9:111696779 chr9:111696783 nonsynonymous SNV 0.081 1 25 hm5C_associated_SNPs_63530 0 0 1 0 1 FAM206A chr9:111696845 5'GT 111696845 Upstream 63bp
chr8 26265602 26265602 1 + C T COAD 26265600 + 26265580 26265620 41 TATCAGACTGGTCCAGTAGACCCGAAAACATTCCACCCAAG TATCAGACTGGTCCAGTAGACCTGAAAACATTCCACCCAAG < 41bp 0.803256550856279 0.547649701297434 0.0721654 0.12170684 prediction 0.51121369911769 Functional Loss - BNIP3L ENSG00000104765 CDS Human protein_coding chr8:26265600 chr8:26265602 synonymous SNV . 0 23 hm5C_associated_SNPs_63536 0 0 1 0 2 BNIP3L chr8:26265516 3'AG 26265516 Downstream 87bp
chr8 26265602 26265602 1 + C T COAD 26265600 + 26265580 26265620 41 TATCAGACTGGTCCAGTAGACCCGAAAACATTCCACCCAAG TATCAGACTGGTCCAGTAGACCTGAAAACATTCCACCCAAG < 41bp 0.803256550856279 0.547649701297434 0.0721654 0.12170684 prediction 0.51121369911769 Functional Loss - BNIP3L ENSG00000104765 CDS Human protein_coding chr8:26265600 chr8:26265602 synonymous SNV . 0 23 hm5C_associated_SNPs_63536 0 0 1 0 2 BNIP3L chr8:26265619 5'GT 26265619 Upstream 18bp
chr17 48548429 48548429 1 + C T HNSC 48548427 + 48548407 48548447 41 GAGAACAGTCCCGTGACATTCGCGCACTTCCCTGAGGACAC GAGAACAGTCCCGTGACATTCGTGCACTTCCCTGAGGACAC < 41bp 0.755597267143283 0.482005868288808 0.34499675 0.39026523 prediction 0.511194534286567 Functional Loss - ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48548427 chr17:48548429 nonsynonymous SNV 0.039 0 23 hm5C_associated_SNPs_63537 0 0 1 0 2 ACSF2 chr17:48548389 3'AG 48548389 Downstream 41bp
chr17 48548429 48548429 1 + C T HNSC 48548427 + 48548407 48548447 41 GAGAACAGTCCCGTGACATTCGCGCACTTCCCTGAGGACAC GAGAACAGTCCCGTGACATTCGTGCACTTCCCTGAGGACAC < 41bp 0.755597267143283 0.482005868288808 0.34499675 0.39026523 prediction 0.511194534286567 Functional Loss - ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48548427 chr17:48548429 nonsynonymous SNV 0.039 0 23 hm5C_associated_SNPs_63537 0 0 1 0 2 ACSF2 chr17:48548496 5'GT 48548496 Upstream 68bp
chr18 32459638 32459638 1 + G T KIRC 32459635 + 32459615 32459655 41 GCAAATCCATGCCCGAAAACCTGGGTACATTCACAGTGGAG GCAAATCCATGCCCGAAAACCTGTGTACATTCACAGTGGAG < 41bp 0.755584894545849 0.441664211931313 0.82169306 0.19020945 prediction 0.511169789091698 Functional Loss - DTNA ENSG00000134769 CDS Human protein_coding chr18:32459635 chr18:32459638 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_63539 0 0 0 0 1 DTNA chr18:32459683 5'GT 32459683 Upstream 46bp
chrX 30236712 30236712 1 + G T COAD 30236710 + 30236690 30236730 41 CAGCCATCATGCCTCGTGGTCAGAAGAGTAAGCTCCGTGCC CAGCCATCATGCCTCGTGGTCATAAGAGTAAGCTCCGTGCC < 41bp 0.884014680045101 0.628442081968228 0.87440187 0.51436096 prediction 0.511145196153746 Functional Loss - MAGEB2 ENSG00000099399 CDS Human protein_coding chrX:30236710 chrX:30236712 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_63541 0 0 1 0 1 MAGEB2 chrX:30236693 3'AG 30236693 Downstream 20bp
chr17 61908724 61908724 1 + C T UCEC 61908722 + 61908702 61908742 41 AATAGGATTGATATCCTGGACTCGGCACTGCTTCGCCCAGG AATAGGATTGATATCCTGGACTTGGCACTGCTTCGCCCAGG < 41bp 0.798757935816637 0.543198056459459 0.07453719 0.064040154 prediction 0.511119758714355 Functional Loss - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61908722 chr17:61908724 nonsynonymous SNV 0.800 2 23 hm5C_associated_SNPs_63543 0 0 1 0 2 PSMC5 chr17:61908687 3'AG 61908687 Downstream 38bp
chr17 61908724 61908724 1 + C T UCEC 61908722 + 61908702 61908742 41 AATAGGATTGATATCCTGGACTCGGCACTGCTTCGCCCAGG AATAGGATTGATATCCTGGACTTGGCACTGCTTCGCCCAGG < 41bp 0.798757935816637 0.543198056459459 0.07453719 0.064040154 prediction 0.511119758714355 Functional Loss - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61908722 chr17:61908724 nonsynonymous SNV 0.800 2 23 hm5C_associated_SNPs_63543 0 0 1 0 2 PSMC5 chr17:61908785 5'GT 61908785 Upstream 62bp
chr17 49340655 49340655 1 + G C BLCA 49340654 + 49340634 49340674 41 GGTTCAAGAACATGAAGACTCGGGTGACTCAGAAGTGGAGA GGTTCAAGAACATGAAGACTCCGGTGACTCAGAAGTGGAGA < 41bp 0.755543851890321 0.445022935162322 0.9134463 0.46039644 prediction 0.511087703780642 Functional Loss - UTP18 ENSG00000011260 CDS Human protein_coding chr17:49340654 chr17:49340655 synonymous SNV . 0 22 hm5C_associated_SNPs_63549 0 0 1 0 2 UTP18 chr17:49340635 3'AG 49340635 Downstream 21bp
chr17 49340655 49340655 1 + G C BLCA 49340654 + 49340634 49340674 41 GGTTCAAGAACATGAAGACTCGGGTGACTCAGAAGTGGAGA GGTTCAAGAACATGAAGACTCCGGTGACTCAGAAGTGGAGA < 41bp 0.755543851890321 0.445022935162322 0.9134463 0.46039644 prediction 0.511087703780642 Functional Loss - UTP18 ENSG00000011260 CDS Human protein_coding chr17:49340654 chr17:49340655 synonymous SNV . 0 22 hm5C_associated_SNPs_63549 0 0 1 0 2 UTP18 chr17:49340747 5'GT 49340747 Upstream 93bp
chr10 75528797 75528797 1 + T C LAML 75528796 + 75528776 75528816 41 GTAGATTTCTTTGGAGCTTTCTACATGAGCAACACGACAGA GTAGATTTCTTTGGAGCTTTCCACATGAGCAACACGACAGA < 41bp 0.787646820129876 0.532104525270855 0.9214884 0.51839876 prediction 0.511084589718042 Functional Loss - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75528796 chr10:75528797 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_63551 0 0 1 0 1 SEC24C chr10:75528765 3'AG 75528765 Downstream 33bp
chr5 32774840 32774840 1 + C T rs147308580 32774838 + 32774818 32774858 41 ACATGTTTGTTGAAGGATTCCACGATGCCATCCTCCTCTAC ACATGTTTGTTGAAGGATTCCATGATGCCATCCTCCTCTAC < 41bp 0.81636477220001 0.560822511241572 0.03669858 0.052580774 prediction 0.511084521916877 Functional Loss - NPR3 ENSG00000113389 CDS Human protein_coding chr5:32774838 chr5:32774840 synonymous SNV . 0 23 hm5C_associated_SNPs_63552 0 0 0 0 1 NPR3 chr5:32774814 3'AG 32774814 Downstream 27bp
chr2 118579637 118579637 1 + G T UCEC 118579635 + 118579615 118579655 41 GCCGTCTGCTGGACCATATGCAGGTAAGAGATGTAGTGCTT GCCGTCTGCTGGACCATATGCATGTAAGAGATGTAGTGCTT < 41bp 0.755536951164058 0.437127100191409 0.87397623 0.32798177 prediction 0.511073902328116 Functional Loss - DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579635 chr2:118579637 nonsynonymous SNV 0.955 2 23 hm5C_associated_SNPs_63553 0 0 1 0 1 DDX18 chr2:118579637 5'GT 118579637 Upstream 1bp
chr7 99045771 99045771 1 + G T LAML 99045769 + 99045749 99045789 41 ATGTGTCCGTTTCGCCACATCAGTGGTGAGAAGACAGTTGT ATGTGTCCGTTTCGCCACATCATTGGTGAGAAGACAGTTGT < 41bp 0.755532892881025 0.411918645857933 0.36041695 0.22719702 prediction 0.51106578576205 Functional Loss - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99045769 chr7:99045771 nonsynonymous SNV 0.761 1 23 hm5C_associated_SNPs_63554 0 0 1 0 1 CPSF4 chr7:99045744 3'AG 99045744 Downstream 28bp
chr5 82554407 82554407 1 + A T LUSC 82554403 + 82554383 82554423 41 TCTTGATGTCACTGATATTGCACCAAGTAGAAAAAGGAGAC TCTTGATGTCACTGATATTGCACCTAGTAGAAAAAGGAGAC < 41bp 0.755529653868617 0.4223598638266 0.12516671 0.056254834 prediction 0.511059307737233 Functional Loss - XRCC4 ENSG00000152422 CDS Human protein_coding chr5:82554403 chr5:82554407 synonymous SNV . 0 25 hm5C_associated_SNPs_63556 0 0 0 6 2 XRCC4 chr5:82554349 3'AG 82554349 Downstream 59bp
chr5 82554407 82554407 1 + A T LUSC 82554403 + 82554383 82554423 41 TCTTGATGTCACTGATATTGCACCAAGTAGAAAAAGGAGAC TCTTGATGTCACTGATATTGCACCTAGTAGAAAAAGGAGAC < 41bp 0.755529653868617 0.4223598638266 0.12516671 0.056254834 prediction 0.511059307737233 Functional Loss - XRCC4 ENSG00000152422 CDS Human protein_coding chr5:82554403 chr5:82554407 synonymous SNV . 0 25 hm5C_associated_SNPs_63556 0 0 0 6 2 XRCC4 chr5:82554496 5'GT 82554496 Upstream 90bp
chr19 36351440 36351440 1 + C T HNSC 36351438 + 36351418 36351458 41 CAGGTGGGCAAAAGGGGGCTCTCCGGTGCTCGGGGCCCGCG CAGGTGGGCAAAAGGGGGCTCTTCGGTGCTCGGGGCCCGCG < 41bp 0.755528106139912 0.476161585045078 0.5407059 0.398102 prediction 0.511056212279824 Functional Loss - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36351438 chr19:36351440 nonsynonymous SNV 0.930 1 23 hm5C_associated_SNPs_63557 0 0 0 0 1 KIRREL2 chr19:36351421 3'AG 36351421 Downstream 20bp
chr6 38120051 38120051 1 + C T STAD 38120049 + 38120029 38120069 41 TACATCGCCTCCCCGAGCAGCACGACTGCACATTCGACCAC TACATCGCCTCCCCGAGCAGCATGACTGCACATTCGACCAC < 41bp 0.755516466123506 0.495884511505913 0.21109483 0.20398289 prediction 0.511032932247013 Functional Loss - ZFAND3 ENSG00000156639 CDS Human protein_coding chr6:38120049 chr6:38120051 synonymous SNV . 0 23 hm5C_associated_SNPs_63559 0 0 1 0 1 ZFAND3 chr6:38120011 3'AG 38120011 Downstream 41bp
chr13 45602090 45602090 1 + A T UCEC 45602086 + 45602066 45602106 41 AAAAGCCCTAATAAAAAAATCTAGAGAACTAAACACCAGAT AAAAGCCCTAATAAAAAAATCTAGTGAACTAAACACCAGAT < 41bp 0.755506974229913 0.435617662743127 0.14974147 0.1019727 prediction 0.511013948459825 Functional Loss - GPALPP1 ENSG00000133114 CDS Human protein_coding chr13:45602086 chr13:45602090 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_63560 0 0 0 0 1 GPALPP1 chr13:45602138 5'GT 45602138 Upstream 49bp
chr10 26505791 26505791 1 + G T COAD 26505788 + 26505768 26505808 41 TTTCGGGTCGGAAGATGGCTCTGGGGATTCCGAGAATCCCG TTTCGGGTCGGAAGATGGCTCTGTGGATTCCGAGAATCCCG < 41bp 0.909946307767538 0.654440012734505 0.31229347 0.070756584 prediction 0.511012590066067 Functional Loss - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26505788 chr10:26505791 nonsynonymous SNV 0.988 2 24 hm5C_associated_SNPs_63562 0 0 0 0 1 GAD2 chr10:26505814 5'GT 26505814 Upstream 24bp
chr14 53178230 53178230 1 + G T LUAD 53178228 + 53178208 53178248 41 GAGGGCTATCAGAACAGATCCGGGAATTAAGAGAGGTTGGT GAGGGCTATCAGAACAGATCCGTGAATTAAGAGAGGTTGGT < 41bp 0.755500495814353 0.438251178676385 0.90074277 0.6504992 prediction 0.511000991628706 Functional Loss - PSMC6 ENSG00000100519 CDS Human protein_coding chr14:53178228 chr14:53178230 synonymous SNV . 0 23 hm5C_associated_SNPs_63563 0 0 1 0 1 PSMC6 chr14:53178242 5'GT 53178242 Upstream 13bp
chr21 47545731 47545731 1 + G C CESC 47545730 + 47545710 47545750 41 GGCGTGGTGCAGTACAGCCACGAGGGCACCTTTGAGGCCAT GGCGTGGTGCAGTACAGCCACCAGGGCACCTTTGAGGCCAT < 41bp 0.755497987707456 0.442035088719133 0.86180645 0.270011 prediction 0.510995975414912 Functional Loss - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47545730 chr21:47545731 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_63564 0 0 0 0 1 COL6A2 chr21:47545699 3'AG 47545699 Downstream 33bp
chr15 80465430 80465430 1 + C T HNSC 80465428 + 80465408 80465448 41 GAGTTTTGGGACCACTGTCTCTCCGTGGGTGGTGCCCATGG GAGTTTTGGGACCACTGTCTCTTCGTGGGTGGTGCCCATGG < 41bp 0.826634184819905 0.571145706847048 0.6107258 0.21195367 prediction 0.510976955945716 Functional Loss - FAH ENSG00000103876 CDS Human protein_coding chr15:80465428 chr15:80465430 nonsynonymous SNV 0.760 5 23 hm5C_associated_SNPs_63565 0 0 1 0 2 FAH chr15:80465356 3'AG 80465356 Downstream 75bp
chr15 80465430 80465430 1 + C T HNSC 80465428 + 80465408 80465448 41 GAGTTTTGGGACCACTGTCTCTCCGTGGGTGGTGCCCATGG GAGTTTTGGGACCACTGTCTCTTCGTGGGTGGTGCCCATGG < 41bp 0.826634184819905 0.571145706847048 0.6107258 0.21195367 prediction 0.510976955945716 Functional Loss - FAH ENSG00000103876 CDS Human protein_coding chr15:80465428 chr15:80465430 nonsynonymous SNV 0.760 5 23 hm5C_associated_SNPs_63565 0 0 1 0 2 FAH chr15:80465486 5'GT 80465486 Upstream 57bp
chr7 19184565 19184565 1 + C T BLCA 19184563 + 19184543 19184583 41 ACGATGGCCAGGCGGAGGGTCTCGATCCGGGACAGCCTTTT ACGATGGCCAGGCGGAGGGTCTTGATCCGGGACAGCCTTTT < 41bp 0.769895850561483 0.514408662442363 0.4239594 0.010060012 prediction 0.51097437623824 Functional Loss - FERD3L ENSG00000146618 CDS Human protein_coding chr7:19184563 chr7:19184565 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_63566 0 0 0 0 1 FERD3L chr7:19184510 3'AG 19184510 Downstream 56bp
chr7 99720002 99720002 1 + G T rs143557149 99720000 + 99719980 99720020 41 AGGAAGAGACACGTGCCTTACAGCGTTTCGTGAGTCCTTCG AGGAAGAGACACGTGCCTTACATCGTTTCGTGAGTCCTTCG < 41bp 0.887787938487025 0.632304271391761 0.28038 0.08807397 prediction 0.510967334190529 Functional Loss - CNPY4 ENSG00000166997 CDS Human protein_coding chr7:99720000 chr7:99720002 nonsynonymous SNV 0.936 1 23 hm5C_associated_SNPs_63567 0 0 0 0 1 CNPY4 chr7:99720008 5'GT 99720008 Upstream 7bp
chr18 47093864 47093864 1 + C T rs2000813 47093862 + 47093842 47093882 41 AAACTCGTGTCAGCCCTGCACACAAGAGAGAAAGACGCCAA AAACTCGTGTCAGCCCTGCACATAAGAGAGAAAGACGCCAA < 41bp 0.819192098670553 0.563718227016539 0.11683074 0.13962826 prediction 0.510947743308028 Functional Loss - LIPG ENSG00000101670 CDS Human protein_coding chr18:47093862 chr18:47093864 nonsynonymous SNV 0.037 1 23 hm5C_associated_SNPs_63570 0 1 0 0 1 LIPG chr18:47093812 3'AG 47093812 Downstream 53bp
chrX 154002935 154002935 1 + C T UCEC 154002933 + 154002913 154002953 41 CTGGACAAGCATGGGAAGCCCACAGACAGCACACCTGCCAC CTGGACAAGCATGGGAAGCCCATAGACAGCACACCTGCCAC < 41bp 0.783889330423978 0.528419006331511 0.1517092 0.24999979 prediction 0.510940648184934 Functional Loss - DKC1 ENSG00000130826 CDS Human protein_coding chrX:154002933 chrX:154002935 nonsynonymous SNV 0.420 2 23 hm5C_associated_SNPs_63571 0 0 1 0 3 DKC1 chrX:154002877 3'AG 154002877 Downstream 59bp
chrX 154002935 154002935 1 + C T UCEC 154002933 + 154002913 154002953 41 CTGGACAAGCATGGGAAGCCCACAGACAGCACACCTGCCAC CTGGACAAGCATGGGAAGCCCATAGACAGCACACCTGCCAC < 41bp 0.783889330423978 0.528419006331511 0.1517092 0.24999979 prediction 0.510940648184934 Functional Loss - DKC1 ENSG00000130826 CDS Human protein_coding chrX:154002933 chrX:154002935 nonsynonymous SNV 0.420 2 23 hm5C_associated_SNPs_63571 0 0 1 0 3 DKC1 chrX:154002965 5'GT 154002965 Upstream 31bp
chrX 154002935 154002935 1 + C T UCEC 154002933 + 154002913 154002953 41 CTGGACAAGCATGGGAAGCCCACAGACAGCACACCTGCCAC CTGGACAAGCATGGGAAGCCCATAGACAGCACACCTGCCAC < 41bp 0.783889330423978 0.528419006331511 0.1517092 0.24999979 prediction 0.510940648184934 Functional Loss - DKC1 ENSG00000130826 CDS Human protein_coding chrX:154002933 chrX:154002935 nonsynonymous SNV 0.420 2 23 hm5C_associated_SNPs_63571 0 0 1 0 3 DKC1 chrX:154002980 5'GT 154002980 Upstream 46bp
chr11 67378902 67378902 1 + C T SKCM 67378900 + 67378880 67378920 41 TCACGGGCGGCTGGGACAACCTCCTTGCTGTGATCCCTGGC TCACGGGCGGCTGGGACAACCTTCTTGCTGTGATCCCTGGC < 41bp 0.755468156326061 0.477973213503069 0.7167977 0.4973 prediction 0.510936312652122 Functional Loss - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67378900 chr11:67378902 synonymous SNV . 0 23 hm5C_associated_SNPs_63572 0 0 1 0 1 NDUFV1 chr11:67378874 3'AG 67378874 Downstream 29bp
chr8 24171051 24171051 1 + C T rs6996616 24171049 + 24171029 24171069 41 TGGATGGTGTGTTGTGGGCCCACGATTTGCAGCAGAACATT TGGATGGTGTGTTGTGGGCCCATGATTTGCAGCAGAACATT < 41bp 0.76757831786445 0.512112739170935 0.23826277 0.3300831 prediction 0.510931157387029 Functional Loss - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24171049 chr8:24171051 synonymous SNV . 0 23 hm5C_associated_SNPs_63573 0 0 0 0 1 ADAM28 chr8:24171093 5'GT 24171093 Upstream 43bp
chr8 28420373 28420373 1 + C T ESCA 28420371 + 28420351 28420391 41 ACTACCTCATGGCAGCATGTCACGACTAACAGATCACTCCA ACTACCTCATGGCAGCATGTCATGACTAACAGATCACTCCA < 41bp 0.782744880960011 0.527282734523853 0.098991245 0.12638912 prediction 0.510924292872316 Functional Loss - FZD3 ENSG00000104290 CDS Human protein_coding chr8:28420371 chr8:28420373 stopgain 0.999 0 23 hm5C_associated_SNPs_63574 0 0 1 0 1 FZD3 chr8:28420315 3'AG 28420315 Downstream 59bp
chr7 31011677 31011677 1 + C T rs740336 31011675 + 31011655 31011695 41 TGAAGGATGCTGCCCTTTTCCACAGCGACGACACTGACCAC TGAAGGATGCTGCCCTTTTCCATAGCGACGACACTGACCAC < 41bp 0.77817235525645 0.522710311998397 0.2698862 0.33279276 prediction 0.510924086516106 Functional Loss - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31011675 chr7:31011677 nonsynonymous SNV 0.052 0 23 hm5C_associated_SNPs_63575 2 0 0 0 2 GHRHR chr7:31011578 3'AG 31011578 Downstream 100bp
chr7 31011677 31011677 1 + C T rs740336 31011675 + 31011655 31011695 41 TGAAGGATGCTGCCCTTTTCCACAGCGACGACACTGACCAC TGAAGGATGCTGCCCTTTTCCATAGCGACGACACTGACCAC < 41bp 0.77817235525645 0.522710311998397 0.2698862 0.33279276 prediction 0.510924086516106 Functional Loss - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31011675 chr7:31011677 nonsynonymous SNV 0.052 0 23 hm5C_associated_SNPs_63575 2 0 0 0 2 GHRHR chr7:31011710 5'GT 31011710 Upstream 34bp
chr2 176982281 176982281 1 + C T UCEC 176982279 + 176982259 176982299 41 CTGAGGTCTCCGTGTCCAGTCCCGAAGTGCAGGAGAAGGAA CTGAGGTCTCCGTGTCCAGTCCTGAAGTGCAGGAGAAGGAA < 41bp 0.760925766344667 0.505465722908214 0.33622915 0.26506186 prediction 0.510920086872906 Functional Loss - HOXD10 ENSG00000128710 CDS Human protein_coding chr2:176982279 chr2:176982281 synonymous SNV . 0 23 hm5C_associated_SNPs_63577 0 0 1 0 1 HOXD10 chr2:176982306 5'GT 176982306 Upstream 26bp
chr19 3192504 3192504 1 + C T KIRC 3192502 + 3192482 3192522 41 GTGCTGAACACGGAGGCGCGCACGATGGCGGCGGAGGTGCT GTGCTGAACACGGAGGCGCGCATGATGGCGGCGGAGGTGCT < 41bp 0.779515968298164 0.524083578239188 0.779371 0.85705423 prediction 0.510864780117953 Functional Loss - NCLN ENSG00000125912 CDS Human protein_coding chr19:3192502 chr19:3192504 nonsynonymous SNV 0.459 4 23 hm5C_associated_SNPs_63581 0 0 0 0 1 NCLN chr19:3192468 3'AG 3192468 Downstream 37bp
chr9 71549884 71549884 1 + C T SKCM 71549882 + 71549862 71549902 41 ACTTCACAGGAGATTGTGTCCTCAATTAGCCAGGAATGGAA ACTTCACAGGAGATTGTGTCCTTAATTAGCCAGGAATGGAA < 41bp 0.755429979317001 0.467052331769297 0.34194744 0.11598316 prediction 0.510859958634001 Functional Loss - PIP5K1B ENSG00000107242 CDS Human protein_coding chr9:71549882 chr9:71549884 nonsynonymous SNV 0.561 1 23 hm5C_associated_SNPs_63582 0 0 0 0 2 PIP5K1B chr9:71549806 3'AG 71549806 Downstream 79bp
chr9 71549884 71549884 1 + C T SKCM 71549882 + 71549862 71549902 41 ACTTCACAGGAGATTGTGTCCTCAATTAGCCAGGAATGGAA ACTTCACAGGAGATTGTGTCCTTAATTAGCCAGGAATGGAA < 41bp 0.755429979317001 0.467052331769297 0.34194744 0.11598316 prediction 0.510859958634001 Functional Loss - PIP5K1B ENSG00000107242 CDS Human protein_coding chr9:71549882 chr9:71549884 nonsynonymous SNV 0.561 1 23 hm5C_associated_SNPs_63582 0 0 0 0 2 PIP5K1B chr9:71549961 5'GT 71549961 Upstream 78bp
chr22 37261113 37261113 1 + A C LUSC 37261112 + 37261092 37261132 41 CTGTACCCTGCCCACACTCCCAGGTAGGCGGCCACTCCCGT CTGTACCCTGCCCACACTCCCCGGTAGGCGGCCACTCCCGT < 41bp 0.755421988933621 0.487550534356666 0.9022803 0.42918146 prediction 0.510843977867242 Functional Loss - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37261112 chr22:37261113 synonymous SNV . 0 22 hm5C_associated_SNPs_63584 0 0 0 0 1 NCF4 chr22:37261114 5'GT 37261114 Upstream 2bp
chr3 129214396 129214396 1 + C T rs116819033 129214394 + 129214374 129214414 41 AACTGTACAAGAGGAGTGGGCACGAGAACCTCGCGCTTGAA AACTGTACAAGAGGAGTGGGCATGAGAACCTCGCGCTTGAA < 41bp 0.762528235013348 0.507109246963236 0.6155346 0.4362019 prediction 0.510837976100224 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129214394 chr3:129214396 synonymous SNV . 0 23 hm5C_associated_SNPs_63585 1 0 1 0 2 IFT122 chr3:129214352 3'AG 129214352 Downstream 45bp
chr3 129214396 129214396 1 + C T rs116819033 129214394 + 129214374 129214414 41 AACTGTACAAGAGGAGTGGGCACGAGAACCTCGCGCTTGAA AACTGTACAAGAGGAGTGGGCATGAGAACCTCGCGCTTGAA < 41bp 0.762528235013348 0.507109246963236 0.6155346 0.4362019 prediction 0.510837976100224 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129214394 chr3:129214396 synonymous SNV . 0 23 hm5C_associated_SNPs_63585 1 0 1 0 2 IFT122 chr3:129214450 5'GT 129214450 Upstream 55bp
chr9 134098265 134098265 1 + A T UCEC 134098261 + 134098241 134098281 41 ACCCACTGGCACTTTCAGCTCTGGAGGAGGAAGTGTGGCAT ACCCACTGGCACTTTCAGCTCTGGTGGAGGAAGTGTGGCAT < 41bp 0.861999655390395 0.606584598014521 0.8396356 0.30546165 prediction 0.510830114751749 Functional Loss - NUP214 ENSG00000126883 CDS Human protein_coding chr9:134098261 chr9:134098265 synonymous SNV . 0 25 hm5C_associated_SNPs_63586 0 0 1 0 1 NUP214 chr9:134098317 5'GT 134098317 Upstream 53bp
chrX 123480538 123480538 1 + G T LUAD 123480536 + 123480516 123480556 41 TGGCAAAATCAGCAGGGAAACCGGCGAGAAGCTCCTGCTTG TGGCAAAATCAGCAGGGAAACCTGCGAGAAGCTCCTGCTTG < 41bp 0.755411742719397 0.406610442566842 0.9104935 0.7159179 prediction 0.510823485438793 Functional Loss - SH2D1A ENSG00000183918 CDS Human protein_coding chrX:123480536 chrX:123480538 nonsynonymous SNV 0.958 3 23 hm5C_associated_SNPs_63587 0 0 0 2 1 SH2D1A chrX:123480629 5'GT 123480629 Upstream 92bp
chr14 93043733 93043733 1 + C T UCEC 93043731 + 93043711 93043751 41 CTGGTTCGCCGGGACAGCAGCTCGAAGCAGCTGGTGCTCTG CTGGTTCGCCGGGACAGCAGCTTGAAGCAGCTGGTGCTCTG < 41bp 0.755409871698495 0.467077326072823 0.5285837 0.2638297 prediction 0.51081974339699 Functional Loss - RIN3 ENSG00000100599 CDS Human protein_coding chr14:93043731 chr14:93043733 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_63588 0 0 0 0 2 RIN3 chr14:93043705 3'AG 93043705 Downstream 29bp
chr14 93043733 93043733 1 + C T UCEC 93043731 + 93043711 93043751 41 CTGGTTCGCCGGGACAGCAGCTCGAAGCAGCTGGTGCTCTG CTGGTTCGCCGGGACAGCAGCTTGAAGCAGCTGGTGCTCTG < 41bp 0.755409871698495 0.467077326072823 0.5285837 0.2638297 prediction 0.51081974339699 Functional Loss - RIN3 ENSG00000100599 CDS Human protein_coding chr14:93043731 chr14:93043733 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_63588 0 0 0 0 2 RIN3 chr14:93043822 5'GT 93043822 Upstream 90bp
chr2 158140834 158140834 1 + A T LUSC 158140830 + 158140810 158140850 41 GTTCACAATAACCTCCCAACCACCAGTGTCATCATGTGCTT GTTCACAATAACCTCCCAACCACCTGTGTCATCATGTGCTT < 41bp 0.868978453891782 0.613578624783622 0.03387159 0.043063313 prediction 0.51079965821632 Functional Loss - GALNT5 ENSG00000136542 CDS Human protein_coding chr2:158140830 chr2:158140834 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_63590 0 0 1 1 1 GALNT5 chr2:158140794 3'AG 158140794 Downstream 41bp
chr19 48830120 48830120 1 + G T LUAD 48830117 + 48830097 48830137 41 CAGCCATGTCACTCCTCTTGCTGGTGGTCTCAGCCCTTCAC CAGCCATGTCACTCCTCTTGCTGTTGGTCTCAGCCCTTCAC < 41bp 0.755396781479135 0.35757215300321 0.14967841 0.039102376 prediction 0.510793562958269 Functional Loss - EMP3 ENSG00000142227 CDS Human protein_coding chr19:48830117 chr19:48830120 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_63591 0 0 1 0 2 EMP3 chr19:48830087 3'AG 48830087 Downstream 34bp
chr19 48830120 48830120 1 + G T LUAD 48830117 + 48830097 48830137 41 CAGCCATGTCACTCCTCTTGCTGGTGGTCTCAGCCCTTCAC CAGCCATGTCACTCCTCTTGCTGTTGGTCTCAGCCCTTCAC < 41bp 0.755396781479135 0.35757215300321 0.14967841 0.039102376 prediction 0.510793562958269 Functional Loss - EMP3 ENSG00000142227 CDS Human protein_coding chr19:48830117 chr19:48830120 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_63591 0 0 1 0 2 EMP3 chr19:48830179 5'GT 48830179 Upstream 60bp
chr19 48830119 48830119 1 + G T LUAD 48830117 + 48830097 48830137 41 CAGCCATGTCACTCCTCTTGCTGGTGGTCTCAGCCCTTCAC CAGCCATGTCACTCCTCTTGCTTGTGGTCTCAGCCCTTCAC < 41bp 0.755396781479135 0.40317658291008 0.14967841 0.06591469 prediction 0.510793562958269 Functional Loss - EMP3 ENSG00000142227 CDS Human protein_coding chr19:48830117 chr19:48830119 synonymous SNV . 0 23 hm5C_associated_SNPs_63592 0 0 1 0 2 EMP3 chr19:48830087 3'AG 48830087 Downstream 33bp
chr19 48830119 48830119 1 + G T LUAD 48830117 + 48830097 48830137 41 CAGCCATGTCACTCCTCTTGCTGGTGGTCTCAGCCCTTCAC CAGCCATGTCACTCCTCTTGCTTGTGGTCTCAGCCCTTCAC < 41bp 0.755396781479135 0.40317658291008 0.14967841 0.06591469 prediction 0.510793562958269 Functional Loss - EMP3 ENSG00000142227 CDS Human protein_coding chr19:48830117 chr19:48830119 synonymous SNV . 0 23 hm5C_associated_SNPs_63592 0 0 1 0 2 EMP3 chr19:48830179 5'GT 48830179 Upstream 61bp
chr19 16918920 16918920 1 + C T UCEC 16918918 + 16918898 16918938 41 GTCTCTGGGACCTGCAGGCACGCAAGTGGAAATTCGAGATG GTCTCTGGGACCTGCAGGCACGTAAGTGGAAATTCGAGATG < 41bp 0.755387948594027 0.486474596582336 0.58275336 0.46551394 prediction 0.510775897188055 Functional Loss - NWD1 ENSG00000188039 CDS Human protein_coding chr19:16918918 chr19:16918920 synonymous SNV . 0 23 hm5C_associated_SNPs_63595 0 0 0 0 1 NWD1 chr19:16918947 5'GT 16918947 Upstream 28bp
chr22 26114243 26114243 1 + C T COAD 26114241 + 26114221 26114261 41 TGGGGAAGGACTGTATTATGCACGGGTACATGCTGAAACTG TGGGGAAGGACTGTATTATGCATGGGTACATGCTGAAACTG < 41bp 0.764589270000927 0.509202733266457 0.26717427 0.27910727 prediction 0.51077307346894 Functional Loss - GRK3 ENSG00000100077 CDS Human protein_coding chr22:26114241 chr22:26114243 synonymous SNV . 0 23 hm5C_associated_SNPs_63596 0 0 1 0 1 GRK3 chr22:26114212 3'AG 26114212 Downstream 32bp
chr3 129247901 129247901 1 + G T UCEC 129247899 + 129247879 129247919 41 ATACTTCGTCTTCGGGCCCACAGGATGCAATTTGGAGGGCT ATACTTCGTCTTCGGGCCCACATGATGCAATTTGGAGGGCT < 41bp 0.878568905146169 0.623189416276462 0.84269005 0.3585891 prediction 0.510758977739415 Functional Loss - RHO ENSG00000163914 CDS Human protein_coding chr3:129247899 chr3:129247901 stopgain 0.729 1 23 hm5C_associated_SNPs_63597 0 0 0 0 1 RHO chr3:129247937 5'GT 129247937 Upstream 37bp
chr1 162468011 162468011 1 + G T CHOL 162468009 + 162467989 162468029 41 TCTGCCGCCGAGTATGGTTTCCGCAAAGAGAGGGCGGCGCT TCTGCCGCCGAGTATGGTTTCCTCAAAGAGAGGGCGGCGCT < 41bp 0.755370977612197 0.417134012331889 0.28324646 0.7513337 prediction 0.510741955224393 Functional Loss - UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162468009 chr1:162468011 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_63601 0 0 1 0 1 UHMK1 chr1:162468058 5'GT 162468058 Upstream 48bp
chr12 72287041 72287041 1 + G T SARC 72287039 + 72287019 72287059 41 GAACACTTCTTGTGAATTGTCAGAATAAGAGTCTTTCACAG GAACACTTCTTGTGAATTGTCATAATAAGAGTCTTTCACAG < 41bp 0.755365553502253 0.434089745834482 0.41985932 0.09499344 prediction 0.510731107004505 Functional Loss - TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72287039 chr12:72287041 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_63603 0 0 1 0 2 TBC1D15 chr12:72287002 3'AG 72287002 Downstream 40bp
chr12 72287041 72287041 1 + G T SARC 72287039 + 72287019 72287059 41 GAACACTTCTTGTGAATTGTCAGAATAAGAGTCTTTCACAG GAACACTTCTTGTGAATTGTCATAATAAGAGTCTTTCACAG < 41bp 0.755365553502253 0.434089745834482 0.41985932 0.09499344 prediction 0.510731107004505 Functional Loss - TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72287039 chr12:72287041 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_63603 0 0 1 0 2 TBC1D15 chr12:72287104 5'GT 72287104 Upstream 64bp
chr5 147513428 147513428 1 + C T HNSC 147513426 + 147513406 147513446 41 GAGAGCAGCACCCCAGGAACCACCGCAGCCAGCATGCCCCC GAGAGCAGCACCCCAGGAACCATCGCAGCCAGCATGCCCCC < 41bp 0.772165344900831 0.516800764680445 0.16746134 0.19975615 prediction 0.510729160440771 Functional Loss - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147513426 chr5:147513428 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_63604 0 0 0 0 2 SPINK5 chr5:147513360 3'AG 147513360 Downstream 69bp
chr5 147513428 147513428 1 + C T HNSC 147513426 + 147513406 147513446 41 GAGAGCAGCACCCCAGGAACCACCGCAGCCAGCATGCCCCC GAGAGCAGCACCCCAGGAACCATCGCAGCCAGCATGCCCCC < 41bp 0.772165344900831 0.516800764680445 0.16746134 0.19975615 prediction 0.510729160440771 Functional Loss - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147513426 chr5:147513428 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_63604 0 0 0 0 2 SPINK5 chr5:147513450 5'GT 147513450 Upstream 23bp
chr1 22843876 22843876 1 + G C LUSC 22843872 + 22843852 22843892 41 CGCCACGTGAGGACCCACACCGGGGACAAGCCCTATGTCTG CGCCACGTGAGGACCCACACCGGGCACAAGCCCTATGTCTG < 41bp 0.821963477082707 0.566601251813998 0.89809227 0.6776204 prediction 0.510724450537419 Functional Loss - ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22843872 chr1:22843876 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_63605 0 0 1 0 2 ZBTB40 chr1:22843793 3'AG 22843793 Downstream 84bp
chr1 22843876 22843876 1 + G C LUSC 22843872 + 22843852 22843892 41 CGCCACGTGAGGACCCACACCGGGGACAAGCCCTATGTCTG CGCCACGTGAGGACCCACACCGGGCACAAGCCCTATGTCTG < 41bp 0.821963477082707 0.566601251813998 0.89809227 0.6776204 prediction 0.510724450537419 Functional Loss - ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22843872 chr1:22843876 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_63605 0 0 1 0 2 ZBTB40 chr1:22843957 5'GT 22843957 Upstream 82bp
chr1 67666558 67666558 1 + G T STAD 67666556 + 67666536 67666576 41 GCATGGAAGAGTCAAAACAACTGCAAATTCACCTGGATGAT GCATGGAAGAGTCAAAACAACTTCAAATTCACCTGGATGAT < 41bp 0.755350165905582 0.491210908026308 0.38408804 0.053148568 prediction 0.510700331811164 Functional Loss - IL23R ENSG00000162594 CDS Human protein_coding chr1:67666556 chr1:67666558 synonymous SNV . 0 23 hm5C_associated_SNPs_63609 0 0 0 2 2 IL23R chr1:67666491 3'AG 67666491 Downstream 68bp
chr1 67666558 67666558 1 + G T STAD 67666556 + 67666536 67666576 41 GCATGGAAGAGTCAAAACAACTGCAAATTCACCTGGATGAT GCATGGAAGAGTCAAAACAACTTCAAATTCACCTGGATGAT < 41bp 0.755350165905582 0.491210908026308 0.38408804 0.053148568 prediction 0.510700331811164 Functional Loss - IL23R ENSG00000162594 CDS Human protein_coding chr1:67666556 chr1:67666558 synonymous SNV . 0 23 hm5C_associated_SNPs_63609 0 0 0 2 2 IL23R chr1:67666580 5'GT 67666580 Upstream 23bp
chr1 60314090 60314090 1 + G T HNSC 60314087 + 60314067 60314107 41 GCAAGCAGGTGAAAACTTTACAGGAAACCAACATGATGTAT GCAAGCAGGTGAAAACTTTACAGTAAACCAACATGATGTAT < 41bp 0.755349916940433 0.407887345472168 0.7800214 0.37429908 prediction 0.510699833880867 Functional Loss - HOOK1 ENSG00000134709 CDS Human protein_coding chr1:60314087 chr1:60314090 stopgain 0.997 1 24 hm5C_associated_SNPs_63610 0 0 1 0 1 HOOK1 chr1:60314188 5'GT 60314188 Upstream 99bp
chr11 117060739 117060739 1 + C T SKCM 117060737 + 117060717 117060757 41 GCGCCCACCCACTGGGCAATCTCAGGTGGGGGTCATGCTGG GCGCCCACCCACTGGGCAATCTTAGGTGGGGGTCATGCTGG < 41bp 0.780023020227063 0.524674307784919 0.2038346 0.31899983 prediction 0.510697424884287 Functional Loss - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117060737 chr11:117060739 synonymous SNV . 0 23 hm5C_associated_SNPs_63611 0 0 1 0 2 SIDT2 chr11:117060668 3'AG 117060668 Downstream 72bp
chr11 117060739 117060739 1 + C T SKCM 117060737 + 117060717 117060757 41 GCGCCCACCCACTGGGCAATCTCAGGTGGGGGTCATGCTGG GCGCCCACCCACTGGGCAATCTTAGGTGGGGGTCATGCTGG < 41bp 0.780023020227063 0.524674307784919 0.2038346 0.31899983 prediction 0.510697424884287 Functional Loss - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117060737 chr11:117060739 synonymous SNV . 0 23 hm5C_associated_SNPs_63611 0 0 1 0 2 SIDT2 chr11:117060741 5'GT 117060741 Upstream 3bp
chr1 36748279 36748279 1 + C T BLCA 36748277 + 36748257 36748297 41 GTCCCGAAGCCGATCTCTCTCTCGTTCAAGGAAGCGCAGGC GTCCCGAAGCCGATCTCTCTCTTGTTCAAGGAAGCGCAGGC < 41bp 0.755344638224099 0.4725046872159 0.064372 0.06274748 prediction 0.510689276448199 Functional Loss - THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36748277 chr1:36748279 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_63612 0 0 1 0 1 THRAP3 chr1:36748301 5'GT 36748301 Upstream 23bp
chr16 66638408 66638408 1 + G C rs576030809 66638407 + 66638387 66638427 41 TGGGAGCTCCGAAGGGGTGCCGGGGCGGTGATCGGGAGGTC TGGGAGCTCCGAAGGGGTGCCCGGGCGGTGATCGGGAGGTC < 41bp 0.84011522977008 0.584774709663399 0.9217977 0.9075824 prediction 0.510681040213362 Functional Loss - CMTM3 ENSG00000140931 UTR5 Human protein_coding chr16:66638407 chr16:66638408 . . 0 22 hm5C_associated_SNPs_63615 0 0 1 0 1 CMTM3 chr16:66638458 5'GT 66638458 Upstream 51bp
chr16 3714414 3714414 1 - G A SKCM 3714416 - 3714396 3714436 41 TACGAGTCCTCGGCGCTGCCCTCCGGGCAGCTAACCAGCCT TACGAGTCCTCGGCGCTGCCCTTCGGGCAGCTAACCAGCCT < 41bp 0.755339623563441 0.478806178553266 0.52927816 0.30117023 prediction 0.510679247126882 Functional Loss - TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3714416 chr16:3714414 nonsynonymous SNV 0.038 2 23 hm5C_associated_SNPs_63616 0 0 1 0 1 TRAP1 chr16:3714460 3'AG 3714460 Downstream 47bp
chr19 2991913 2991913 1 + G T SKCM 2991911 + 2991891 2991931 41 ACAACATCTGGACTGGGGGTCCGGATGCCTGTCTGCGGTGC ACAACATCTGGACTGGGGGTCCTGATGCCTGTCTGCGGTGC < 41bp 0.755333639800372 0.403804866329401 0.6374743 0.17149436 prediction 0.510667279600744 Functional Loss - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2991911 chr19:2991913 synonymous SNV . 0 23 hm5C_associated_SNPs_63618 0 0 0 0 2 TLE6 chr19:2991841 3'AG 2991841 Downstream 73bp
chr19 2991913 2991913 1 + G T SKCM 2991911 + 2991891 2991931 41 ACAACATCTGGACTGGGGGTCCGGATGCCTGTCTGCGGTGC ACAACATCTGGACTGGGGGTCCTGATGCCTGTCTGCGGTGC < 41bp 0.755333639800372 0.403804866329401 0.6374743 0.17149436 prediction 0.510667279600744 Functional Loss - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2991911 chr19:2991913 synonymous SNV . 0 23 hm5C_associated_SNPs_63618 0 0 0 0 2 TLE6 chr19:2991982 5'GT 2991982 Upstream 70bp
chr19 36255943 36255943 1 + C T SKCM 36255941 + 36255921 36255961 41 CCTTCTCCCTGCAGCAAAGCCTCCATCTCCTCCTCCTCCTC CCTTCTCCCTGCAGCAAAGCCTTCATCTCCTCCTCCTCCTC < 41bp 0.821876232628027 0.56655357237422 0.96656716 0.058219343 prediction 0.510645320507615 Functional Loss - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36255941 chr19:36255943 nonsynonymous SNV 0.957 2 23 hm5C_associated_SNPs_63621 0 0 1 0 1 PROSER3 chr19:36255935 3'AG 36255935 Downstream 9bp
chr17 61568381 61568381 1 + C T COAD 61568379 + 61568359 61568399 41 GTGCCCTTCCCTTCAGCCCCCTCGATGGACACCACAGAGGC GTGCCCTTCCCTTCAGCCCCCTTGATGGACACCACAGAGGC < 41bp 0.755319513417464 0.474544054589473 0.54346484 0.07563844 prediction 0.510639026834928 Functional Loss - ACE ENSG00000159640;ENSG00000264813 CDS Human other chr17:61568379 chr17:61568381 nonsynonymous SNV 0.034 0 23 hm5C_associated_SNPs_63622 0 0 0 0 2 ACE chr17:61568315 3'AG 61568315 Downstream 67bp
chr17 61568381 61568381 1 + C T COAD 61568379 + 61568359 61568399 41 GTGCCCTTCCCTTCAGCCCCCTCGATGGACACCACAGAGGC GTGCCCTTCCCTTCAGCCCCCTTGATGGACACCACAGAGGC < 41bp 0.755319513417464 0.474544054589473 0.54346484 0.07563844 prediction 0.510639026834928 Functional Loss - ACE ENSG00000159640;ENSG00000264813 CDS Human other chr17:61568379 chr17:61568381 nonsynonymous SNV 0.034 0 23 hm5C_associated_SNPs_63622 0 0 0 0 2 ACE chr17:61568412 5'GT 61568412 Upstream 32bp
chr14 77323797 77323797 1 + G T SARC 77323794 + 77323774 77323814 41 ATCAAGAGGAACCCCAAATCCAGGATGGAAGAGCTTGATAT ATCAAGAGGAACCCCAAATCCAGTATGGAAGAGCTTGATAT < 41bp 0.906923955215547 0.651605755194493 0.35308397 0.08143765 prediction 0.510636400042109 Functional Loss - LRRC74A ENSG00000100565 CDS Human protein_coding chr14:77323794 chr14:77323797 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_63623 0 0 0 0 1 LRRC74A chr14:77323723 3'AG 77323723 Downstream 75bp
chrX 99905798 99905798 1 + G T UCEC 99905796 + 99905776 99905816 41 TTCTAGGTTCTGGCTACTATCCGGATGAAAGCTACAATGAA TTCTAGGTTCTGGCTACTATCCTGATGAAAGCTACAATGAA < 41bp 0.755312555858903 0.415607722947477 0.9078918 0.38791788 prediction 0.510625111717807 Functional Loss - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99905796 chrX:99905798 synonymous SNV . 0 23 hm5C_associated_SNPs_63625 0 0 0 0 2 SRPX2 chrX:99905782 3'AG 99905782 Downstream 17bp
chrX 99905798 99905798 1 + G T UCEC 99905796 + 99905776 99905816 41 TTCTAGGTTCTGGCTACTATCCGGATGAAAGCTACAATGAA TTCTAGGTTCTGGCTACTATCCTGATGAAAGCTACAATGAA < 41bp 0.755312555858903 0.415607722947477 0.9078918 0.38791788 prediction 0.510625111717807 Functional Loss - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99905796 chrX:99905798 synonymous SNV . 0 23 hm5C_associated_SNPs_63625 0 0 0 0 2 SRPX2 chrX:99905862 5'GT 99905862 Upstream 65bp
chr15 102516429 102516429 1 + A T SKCM 102516425 + 102516405 102516445 41 TCCCTCCTCTGCCGCCACCGCAGCAGCCACAGGCAGAGGAG TCCCTCCTCTGCCGCCACCGCAGCTGCCACAGGCAGAGGAG < 41bp 0.835577424220386 0.580267390711533 0.32238626 0.33174556 prediction 0.510620067017705 Functional Loss - WASH3P ENSG00000185596 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102516425 chr15:102516429 . . 0 25 hm5C_associated_SNPs_63626 0 0 0 0 1 WASH3P chr15:102516336 3'AG 102516336 Downstream 94bp
chr19 55048376 55048376 1 + C T UCEC 55048374 + 55048354 55048394 41 AGTGACCCGCTGCAACTTTACACCACAGGTGAGGAGCCCAT AGTGACCCGCTGCAACTTTACATCACAGGTGAGGAGCCCAT < 41bp 0.759098733426596 0.503792096557171 0.014070153 0.019241363 prediction 0.510613273738849 Functional Loss - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55048374 chr19:55048376 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_63627 0 0 0 0 1 KIR3DX1 chr19:55048381 5'GT 55048381 Upstream 6bp
chr12 49308297 49308297 1 + C T BLCA 49308295 + 49308275 49308315 41 TGCAGAGGCACCGGCTCAGTCTCCTGGAGGAAAGTTACAAC TGCAGAGGCACCGGCTCAGTCTTCTGGAGGAAAGTTACAAC < 41bp 0.755303099722715 0.46296329783513 0.15827805 0.12935409 prediction 0.51060619944543 Functional Loss - CCDC65 ENSG00000139537 CDS Human protein_coding chr12:49308295 chr12:49308297 synonymous SNV . 0 23 hm5C_associated_SNPs_63628 0 0 0 0 1 CCDC65 chr12:49308356 5'GT 49308356 Upstream 60bp
chr11 1082714 1082714 1 + A T LUSC 1082710 + 1082690 1082730 41 TGGGGCTGGCGGGAGCATGTCTGCAGTGAGTGCCGTCCCCG TGGGGCTGGCGGGAGCATGTCTGCTGTGAGTGCCGTCCCCG < 41bp 0.840879941881549 0.585577692322656 0.50935906 0.5013499 prediction 0.510604499117786 Functional Loss - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1082710 chr11:1082714 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_63629 0 0 0 0 1 MUC2 chr11:1082714 5'GT 1082714 Upstream 1bp
chr8 18257603 18257603 1 + C T COAD 18257601 + 18257581 18257621 41 CATTAACTGACATTCTTGAGCACCAGATCCGGGCTGTTCCC CATTAACTGACATTCTTGAGCATCAGATCCGGGCTGTTCCC < 41bp 0.769937305049756 0.514642835706895 0.15099528 0.107194364 prediction 0.510588938685721 Functional Loss - NAT2 ENSG00000156006 CDS Human protein_coding chr8:18257601 chr8:18257603 synonymous SNV . 0 23 hm5C_associated_SNPs_63631 0 0 0 0 1 NAT2 chr8:18257508 3'AG 18257508 Downstream 96bp
chr6 148664260 148664260 1 + G T BLCA 148664258 + 148664238 148664278 41 AGCCTGAGCCCGAGCCCGAGCCGGAGCCCGAGCCCGCGCCG AGCCTGAGCCCGAGCCCGAGCCTGAGCCCGAGCCCGCGCCG < 41bp 0.887686204677907 0.632394761992902 0.8705963 0.40778077 prediction 0.51058288537001 Functional Loss - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148664258 chr6:148664260 synonymous SNV . 0 23 hm5C_associated_SNPs_63632 0 0 1 0 1 SASH1 chr6:148664359 5'GT 148664359 Upstream 100bp
chr8 134225361 134225361 1 + G C BRCA 134225360 + 134225340 134225380 41 TGACTACAGCGGGGACCGCCCGAGGTACGCAATAGGAGTGT TGACTACAGCGGGGACCGCCCCAGGTACGCAATAGGAGTGT < 41bp 0.851805371513967 0.596529859175065 0.900671 0.7394512 prediction 0.510551024677805 Functional Loss - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134225360 chr8:134225361 synonymous SNV . 0 22 hm5C_associated_SNPs_63634 0 0 0 0 2 WISP1 chr8:134225363 5'GT 134225363 Upstream 3bp
chr8 134225361 134225361 1 + G C BRCA 134225360 + 134225340 134225380 41 TGACTACAGCGGGGACCGCCCGAGGTACGCAATAGGAGTGT TGACTACAGCGGGGACCGCCCCAGGTACGCAATAGGAGTGT < 41bp 0.851805371513967 0.596529859175065 0.900671 0.7394512 prediction 0.510551024677805 Functional Loss - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134225360 chr8:134225361 synonymous SNV . 0 22 hm5C_associated_SNPs_63634 0 0 0 0 2 WISP1 chr8:134225386 5'GT 134225386 Upstream 26bp
chr7 44797501 44797501 1 + G C LUSC 44797497 + 44797477 44797517 41 TTTCTGCAGCATGGAGGTCCCCGGGGGCCTAGTGTCCCCGC TTTCTGCAGCATGGAGGTCCCCGGCGGCCTAGTGTCCCCGC < 41bp 0.834623807894818 0.579349562610184 0.90711844 0.7757307 prediction 0.510548490569267 Functional Loss - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44797497 chr7:44797501 nonsynonymous SNV 0.335 4 25 hm5C_associated_SNPs_63636 0 0 1 0 1 ZMIZ2 chr7:44797447 3'AG 44797447 Downstream 55bp
chr1 204085774 204085774 1 + G T GBM 204085772 + 204085752 204085792 41 TGCTGTTTGAGAAGCAGCAGCAGCAGATGGAGCTTGCCCGG TGCTGTTTGAGAAGCAGCAGCATCAGATGGAGCTTGCCCGG < 41bp 0.755268953834597 0.406330687230041 0.53227055 0.2778824 prediction 0.510537907669194 Functional Loss - SOX13 ENSG00000143842 CDS Human protein_coding chr1:204085772 chr1:204085774 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_63637 0 0 0 0 1 SOX13 chr1:204085807 5'GT 204085807 Upstream 34bp
chr2 88485425 88485425 1 + G T ACC 88485423 + 88485403 88485443 41 CCCCATCCCCACAGCACTCCCCGGTGCTGCCTCGCCCCTGC CCCCATCCCCACAGCACTCCCCTGTGCTGCCTCGCCCCTGC < 41bp 0.755268905305063 0.403627771862904 0.9243947 0.33625463 prediction 0.510537810610125 Functional Loss - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88485423 chr2:88485425 nonsynonymous SNV 0.728 1 23 hm5C_associated_SNPs_63638 0 0 0 0 1 THNSL2 chr2:88485417 3'AG 88485417 Downstream 9bp
chr16 31046343 31046343 1 + A C LUAD 31046342 + 31046322 31046362 41 GAACTATAACTCCGTCAACACAAGAATGAGAAAAACCCAGG GAACTATAACTCCGTCAACACCAGAATGAGAAAAACCCAGG < 41bp 0.755255814573411 0.498927328901701 0.4442869 0.2798759 prediction 0.510511629146821 Functional Loss - STX4 ENSG00000103496 CDS Human protein_coding chr16:31046342 chr16:31046343 synonymous SNV . 0 22 hm5C_associated_SNPs_63641 0 0 1 0 2 STX4 chr16:31046291 3'AG 31046291 Downstream 53bp
chr16 31046343 31046343 1 + A C LUAD 31046342 + 31046322 31046362 41 GAACTATAACTCCGTCAACACAAGAATGAGAAAAACCCAGG GAACTATAACTCCGTCAACACCAGAATGAGAAAAACCCAGG < 41bp 0.755255814573411 0.498927328901701 0.4442869 0.2798759 prediction 0.510511629146821 Functional Loss - STX4 ENSG00000103496 CDS Human protein_coding chr16:31046342 chr16:31046343 synonymous SNV . 0 22 hm5C_associated_SNPs_63641 0 0 1 0 2 STX4 chr16:31046361 5'GT 31046361 Upstream 19bp
chr11 111385684 111385684 1 + G C LUAD 111385680 + 111385660 111385700 41 GAATCTCAGCTGGTGCTGCGCAGAGACAGCAGTCAGCGTCT GAATCTCAGCTGGTGCTGCGCAGACACAGCAGTCAGCGTCT < 41bp 0.833757373596023 0.578510043185179 0.8603816 0.33010066 prediction 0.510494660821686 Functional Loss - C11orf88 ENSG00000183644 CDS Human protein_coding chr11:111385680 chr11:111385684 nonsynonymous SNV 0.343 1 25 hm5C_associated_SNPs_63642 0 0 0 0 1 C11orf88 chr11:111385735 5'GT 111385735 Upstream 52bp
chr9 135906488 135906488 1 + G T CESC 135906485 + 135906465 135906505 41 CGCATGGTGTGCGTGGAGTACCCGGGAGTGGTGCGTGATGT CGCATGGTGTGCGTGGAGTACCCTGGAGTGGTGCGTGATGT < 41bp 0.755245846726982 0.378755232017232 0.43501925 0.22671708 prediction 0.510491693453964 Functional Loss - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135906485 chr9:135906488 synonymous SNV . 0 24 hm5C_associated_SNPs_63643 0 0 1 0 1 GTF3C5 chr9:135906551 5'GT 135906551 Upstream 64bp
chr5 169015579 169015579 1 + G C HNSC 169015575 + 169015555 169015595 41 TAATGAAATGATGACCATGACTGAGGTAGGACTCTGGACTC TAATGAAATGATGACCATGACTGACGTAGGACTCTGGACTC < 41bp 0.80066536600939 0.545420394985855 0.41462946 0.34202906 prediction 0.510489942047071 Functional Loss - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169015575 chr5:169015579 nonsynonymous SNV 0.774 4 25 hm5C_associated_SNPs_63644 0 0 1 0 1 SPDL1 chr5:169015579 5'GT 169015579 Upstream 1bp
chr19 4954466 4954466 1 + G T UCEC 4954463 + 4954443 4954483 41 GAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAAGTG GAGGGGGGCTTCGCGTCCCCCAGTACGGGCAAGGGCAAGTG < 41bp 0.90753960402982 0.652309895915832 0.828852 0.3908939 prediction 0.510459416227976 Functional Loss - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954463 chr19:4954466 . 0.009 0 24 hm5C_associated_SNPs_63648 0 0 0 0 1 UHRF1 chr19:4954500 5'GT 4954500 Upstream 35bp
chr9 2110307 2110307 1 + G T OV 2110305 + 2110285 2110325 41 GCTGAAGAAATTCAATGAACCTGGATCCCAGTATTTCATTT GCTGAAGAAATTCAATGAACCTTGATCCCAGTATTTCATTT < 41bp 0.755225126738113 0.42779127228386 0.10341841 0.021945924 prediction 0.510450253476227 Functional Loss - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2110305 chr9:2110307 stopgain 1.000 1 23 hm5C_associated_SNPs_63650 0 0 1 0 1 SMARCA2 chr9:2110254 3'AG 2110254 Downstream 54bp
chr12 66639013 66639013 1 + C T THCA 66639011 + 66638991 66639031 41 GGCAGGCCGGTGTGCTGCAACGCGGGCAAAGTTAAGACCAT GGCAGGCCGGTGTGCTGCAACGTGGGCAAAGTTAAGACCAT < 41bp 0.778937577627726 0.523713237941057 0.4011349 0.63294446 prediction 0.510448679373338 Functional Loss - IRAK3 ENSG00000090376 CDS Human protein_coding chr12:66639011 chr12:66639013 nonsynonymous SNV 0.003 3 23 hm5C_associated_SNPs_63651 0 0 0 0 1 IRAK3 chr12:66639042 5'GT 66639042 Upstream 30bp
chr13 101101515 101101515 1 + C T UCEC 101101513 + 101101493 101101533 41 GTTTGTTTTTTAGTGTCTTTCTCGAGAAGCAGGTGGAAACA GTTTGTTTTTTAGTGTCTTTCTTGAGAAGCAGGTGGAAACA < 41bp 0.755220368875955 0.474046264793969 0.8604242 0.2373293 prediction 0.510440737751911 Functional Loss - PCCA ENSG00000175198 CDS Human protein_coding chr13:101101513 chr13:101101515 stopgain 1.000 1 23 hm5C_associated_SNPs_63652 0 0 1 0 1 PCCA chr13:101101559 5'GT 101101559 Upstream 45bp
chr8 16956031 16956031 1 + C T HNSC 16956029 + 16956009 16956049 41 TGGGATACACTGAGACGTAACACAAGCCAAGCACTGTTTTC TGGGATACACTGAGACGTAACATAAGCCAAGCACTGTTTTC < 41bp 0.755219950675607 0.475123643574464 0.06928474 0.045304507 prediction 0.510439901351214 Functional Loss - MICU3 ENSG00000155970 CDS Human protein_coding chr8:16956029 chr8:16956031 nonsynonymous SNV 0.962 2 23 hm5C_associated_SNPs_63653 0 0 0 0 2 MICU3 chr8:16955967 3'AG 16955967 Downstream 65bp
chr8 16956031 16956031 1 + C T HNSC 16956029 + 16956009 16956049 41 TGGGATACACTGAGACGTAACACAAGCCAAGCACTGTTTTC TGGGATACACTGAGACGTAACATAAGCCAAGCACTGTTTTC < 41bp 0.755219950675607 0.475123643574464 0.06928474 0.045304507 prediction 0.510439901351214 Functional Loss - MICU3 ENSG00000155970 CDS Human protein_coding chr8:16956029 chr8:16956031 nonsynonymous SNV 0.962 2 23 hm5C_associated_SNPs_63653 0 0 0 0 2 MICU3 chr8:16956062 5'GT 16956062 Upstream 32bp
chr17 7907470 7907470 1 + A C STAD 7907469 + 7907449 7907489 41 TGCCCTCTGACCTCAATCTGCAGCAGGTAGACGGTCCCGGG TGCCCTCTGACCTCAATCTGCCGCAGGTAGACGGTCCCGGG < 41bp 0.767921631518309 0.512704750622754 0.3044697 0.30755213 prediction 0.510433761791109 Functional Loss - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7907469 chr17:7907470 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_63654 0 0 0 0 1 GUCY2D chr17:7907474 5'GT 7907474 Upstream 5bp
chr14 100996193 100996193 1 + G T UCEC 100996191 + 100996171 100996211 41 AGTGGGCTGCGAGTGCTCCCCAGGCGGTGACTTGCTGGTGA AGTGGGCTGCGAGTGCTCCCCATGCGGTGACTTGCTGGTGA < 41bp 0.873325063943196 0.618110882282589 0.90325993 0.5119781 prediction 0.510428363321213 Functional Loss - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100996191 chr14:100996193 nonsynonymous SNV 0.035 0 23 hm5C_associated_SNPs_63656 0 0 0 0 1 WDR25 chr14:100996157 3'AG 100996157 Downstream 37bp
chr1 47504418 47504418 1 + G T LUSC 47504415 + 47504395 47504435 41 AGAGGAAGTACCAGGATTTTCTGGATATTGTCCTTTCTGCC AGAGGAAGTACCAGGATTTTCTGTATATTGTCCTTTCTGCC < 41bp 0.912021560917698 0.656810547210336 0.2601382 0.16097182 prediction 0.510422027414725 Functional Loss - CYP4X1 ENSG00000186377 CDS Human protein_coding chr1:47504415 chr1:47504418 nonsynonymous SNV 0.979 4 24 hm5C_associated_SNPs_63657 0 0 0 0 2 CYP4X1 chr1:47504332 3'AG 47504332 Downstream 87bp
chr1 47504418 47504418 1 + G T LUSC 47504415 + 47504395 47504435 41 AGAGGAAGTACCAGGATTTTCTGGATATTGTCCTTTCTGCC AGAGGAAGTACCAGGATTTTCTGTATATTGTCCTTTCTGCC < 41bp 0.912021560917698 0.656810547210336 0.2601382 0.16097182 prediction 0.510422027414725 Functional Loss - CYP4X1 ENSG00000186377 CDS Human protein_coding chr1:47504415 chr1:47504418 nonsynonymous SNV 0.979 4 24 hm5C_associated_SNPs_63657 0 0 0 0 2 CYP4X1 chr1:47504438 5'GT 47504438 Upstream 21bp
chr1 12819343 12819343 1 + C T rs78632492 12819341 + 12819321 12819361 41 TACAACCGGCATGGTTACAACCCGGGGCTGCCTCCACTCCG TACAACCGGCATGGTTACAACCTGGGGCTGCCTCCACTCCG < 41bp 0.755206761029689 0.487907059937743 0.54385227 0.3700114 prediction 0.510413522059377 Functional Loss - C1orf158 ENSG00000157330 CDS Human protein_coding chr1:12819341 chr1:12819343 nonsynonymous SNV 0.087 3 23 hm5C_associated_SNPs_63658 0 0 0 0 1 C1orf158 chr1:12819420 5'GT 12819420 Upstream 78bp
chr5 52942083 52942083 1 + A C rs31304 52942079 + 52942059 52942099 41 GTAGGATATCACTACTTTAACTGGAGTTCCAGAAGAGCATA GTAGGATATCACTACTTTAACTGGCGTTCCAGAAGAGCATA < 41bp 0.895840106359214 0.640651828537693 0.41486698 0.42522717 prediction 0.510376555643042 Functional Loss - NDUFS4 ENSG00000164258 CDS Human protein_coding chr5:52942079 chr5:52942083 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_63665 3 0 1 0 1 NDUFS4 chr5:52942063 3'AG 52942063 Downstream 21bp
chr6 160239602 160239602 1 + C T BLCA 160239600 + 160239580 160239620 41 CTTGCAGCATCGACCCCGTGCCCGAGTCATCCTTTCCTCAG CTTGCAGCATCGACCCCGTGCCTGAGTCATCCTTTCCTCAG < 41bp 0.769573200291191 0.514400994083503 0.089870214 0.04232347 prediction 0.510344412415376 Functional Loss - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160239600 chr6:160239602 synonymous SNV . 0 23 hm5C_associated_SNPs_63666 0 0 0 0 2 PNLDC1 chr6:160239587 3'AG 160239587 Downstream 16bp
chr6 160239602 160239602 1 + C T BLCA 160239600 + 160239580 160239620 41 CTTGCAGCATCGACCCCGTGCCCGAGTCATCCTTTCCTCAG CTTGCAGCATCGACCCCGTGCCTGAGTCATCCTTTCCTCAG < 41bp 0.769573200291191 0.514400994083503 0.089870214 0.04232347 prediction 0.510344412415376 Functional Loss - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160239600 chr6:160239602 synonymous SNV . 0 23 hm5C_associated_SNPs_63666 0 0 0 0 2 PNLDC1 chr6:160239686 5'GT 160239686 Upstream 85bp
chr17 5271721 5271721 1 + G T UCEC 5271719 + 5271699 5271739 41 AGATCTTACTTGAAGAGTTACAGCAGGGGCTTTCCCAGGCA AGATCTTACTTGAAGAGTTACATCAGGGGCTTTCCCAGGCA < 41bp 0.755168462701835 0.432897464090611 0.27746624 0.27283877 prediction 0.510336925403669 Functional Loss - RABEP1 ENSG00000029725 CDS Human protein_coding chr17:5271719 chr17:5271721 nonsynonymous SNV 0.922 4 23 hm5C_associated_SNPs_63667 0 0 1 0 2 RABEP1 chr17:5271665 3'AG 5271665 Downstream 57bp
chr17 5271721 5271721 1 + G T UCEC 5271719 + 5271699 5271739 41 AGATCTTACTTGAAGAGTTACAGCAGGGGCTTTCCCAGGCA AGATCTTACTTGAAGAGTTACATCAGGGGCTTTCCCAGGCA < 41bp 0.755168462701835 0.432897464090611 0.27746624 0.27283877 prediction 0.510336925403669 Functional Loss - RABEP1 ENSG00000029725 CDS Human protein_coding chr17:5271719 chr17:5271721 nonsynonymous SNV 0.922 4 23 hm5C_associated_SNPs_63667 0 0 1 0 2 RABEP1 chr17:5271763 5'GT 5271763 Upstream 43bp
chr18 14763994 14763994 1 + G T CESC 14763991 + 14763971 14764011 41 TGTAAAGACTGAATGCGTGGCAGGAGTAACACCTAATAAAA TGTAAAGACTGAATGCGTGGCAGTAGTAACACCTAATAAAA < 41bp 0.75516620195079 0.388060404160982 0.35592794 0.025550455 prediction 0.510332403901581 Functional Loss - ANKRD30B ENSG00000180777 CDS Human protein_coding chr18:14763991 chr18:14763994 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_63668 0 0 0 0 1 ANKRD30B chr18:14764089 5'GT 14764089 Upstream 96bp
chr1 100960422 100960422 1 + G T LUAD 100960419 + 100960399 100960439 41 AAATGAAAAATGGTATAACCCAGGGAGACAAACTACGTGCC AAATGAAAAATGGTATAACCCAGTGAGACAAACTACGTGCC < 41bp 0.755155177306824 0.388205729370811 0.92777264 0.88810027 prediction 0.510310354613648 Functional Loss - CDC14A ENSG00000079335 CDS Human protein_coding chr1:100960419 chr1:100960422 stopgain 0.995 1 24 hm5C_associated_SNPs_63669 0 0 1 1 2 CDC14A chr1:100960374 3'AG 100960374 Downstream 49bp
chr1 100960422 100960422 1 + G T LUAD 100960419 + 100960399 100960439 41 AAATGAAAAATGGTATAACCCAGGGAGACAAACTACGTGCC AAATGAAAAATGGTATAACCCAGTGAGACAAACTACGTGCC < 41bp 0.755155177306824 0.388205729370811 0.92777264 0.88810027 prediction 0.510310354613648 Functional Loss - CDC14A ENSG00000079335 CDS Human protein_coding chr1:100960419 chr1:100960422 stopgain 0.995 1 24 hm5C_associated_SNPs_63669 0 0 1 1 2 CDC14A chr1:100960486 5'GT 100960486 Upstream 65bp
chr2 96072753 96072753 1 + C T COAD 96072751 + 96072731 96072771 41 AACCTTCCTGGCTCCAGTCACACGACCAGATAAGGTGGTGT AACCTTCCTGGCTCCAGTCACATGACCAGATAAGGTGGTGT < 41bp 0.793209195423028 0.538056214441782 0.3149432 0.44732907 prediction 0.510305961962493 Functional Loss - FAHD2A ENSG00000115042 CDS Human protein_coding chr2:96072751 chr2:96072753 stopgain 0.993 0 23 hm5C_associated_SNPs_63670 0 0 1 0 1 FAHD2A chr2:96072689 3'AG 96072689 Downstream 65bp
chr19 6531242 6531242 1 + G C rs201443100 6531238 + 6531218 6531258 41 GGCTCGCGCCTCGCCCGGCTCCGCGGCCAGCCCGAGACTCC GGCTCGCGCCTCGCCCGGCTCCGCCGCCAGCCCGAGACTCC < 41bp 0.813250440417908 0.558107427339672 0.67045784 0.26348323 prediction 0.510286026156472 Functional Loss - TNFSF9 ENSG00000125657 CDS Human protein_coding chr19:6531238 chr19:6531242 synonymous SNV . 0 25 hm5C_associated_SNPs_63671 0 0 0 0 1 TNFSF9 chr19:6531314 5'GT 6531314 Upstream 73bp
chr1 226026434 226026434 1 + C T OV 226026432 + 226026412 226026452 41 CGAAGCCCTTGCTGATGGTGCACGGCTGGCCCGGCTCTTTC CGAAGCCCTTGCTGATGGTGCATGGCTGGCCCGGCTCTTTC < 41bp 0.775372769093572 0.520241765308288 0.24335614 0.22102311 prediction 0.510262007570568 Functional Loss - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226026432 chr1:226026434 synonymous SNV . 0 23 hm5C_associated_SNPs_63674 0 0 1 0 1 EPHX1 chr1:226026355 3'AG 226026355 Downstream 80bp
chr8 43054619 43054619 1 + C T UCEC 43054617 + 43054597 43054637 41 AGCTGAAGGACAACCAGTCCCACAAGGAGCACCTGACTCAG AGCTGAAGGACAACCAGTCCCATAAGGAGCACCTGACTCAG < 41bp 0.786296462478806 0.531178125885162 0.16484052 0.19975281 prediction 0.510236673187288 Functional Loss - HGSNAT ENSG00000165102 CDS Human protein_coding chr8:43054617 chr8:43054619 synonymous SNV . 0 23 hm5C_associated_SNPs_63675 0 0 1 0 1 HGSNAT chr8:43054531 3'AG 43054531 Downstream 89bp
chr4 166986890 166986890 1 + T C GBM 166986889 + 166986869 166986909 41 GTCTTTCCTCTGAGTCTAAACTGCATGGCAAATTCTGTGGC GTCTTTCCTCTGAGTCTAAACCGCATGGCAAATTCTGTGGC < 41bp 0.764378346853604 0.509260920079797 0.41491088 0.25811228 prediction 0.510234853547615 Functional Loss - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166986889 chr4:166986890 nonsynonymous SNV 0.984 3 22 hm5C_associated_SNPs_63676 0 0 0 0 1 TLL1 chr4:166986835 3'AG 166986835 Downstream 56bp
chr9 130860974 130860974 1 + G T UCEC 130860972 + 130860952 130860992 41 TCAGTGTCTTCATCCCCTCCCAGGAATTCTCCACCTACCGC TCAGTGTCTTCATCCCCTCCCATGAATTCTCCACCTACCGC < 41bp 0.755085573324885 0.410744649644596 0.2457121 0.015481293 prediction 0.510171146649771 Functional Loss - SLC25A25 ENSG00000148339 CDS Human protein_coding chr9:130860972 chr9:130860974 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_63686 0 0 0 0 2 SLC25A25 chr9:130861004 5'GT 130861004 Upstream 31bp
chr9 130860974 130860974 1 + G T UCEC 130860972 + 130860952 130860992 41 TCAGTGTCTTCATCCCCTCCCAGGAATTCTCCACCTACCGC TCAGTGTCTTCATCCCCTCCCATGAATTCTCCACCTACCGC < 41bp 0.755085573324885 0.410744649644596 0.2457121 0.015481293 prediction 0.510171146649771 Functional Loss - SLC25A25 ENSG00000148339 CDS Human protein_coding chr9:130860972 chr9:130860974 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_63686 0 0 0 0 2 SLC25A25 chr9:130861047 5'GT 130861047 Upstream 74bp
chr21 45110303 45110303 1 + T C UCEC 45110302 + 45110282 45110322 41 GAGCAGCACTGCCACCCACCCTCCAGGCCCTGCCGTCCAGG GAGCAGCACTGCCACCCACCCCCCAGGCCCTGCCGTCCAGG < 41bp 0.792710861802115 0.537627500422117 0.9411277 0.19787529 prediction 0.510166722759997 Functional Loss - RRP1B ENSG00000160208 CDS Human protein_coding chr21:45110302 chr21:45110303 synonymous SNV . 0 22 hm5C_associated_SNPs_63688 0 0 1 0 1 RRP1B chr21:45110321 5'GT 45110321 Upstream 19bp
chr6 55264052 55264052 1 + G T LUSC 55264050 + 55264030 55264070 41 TGCAAACAAAATCACTTTAACTGGATTTCATTCCCCCTTCA TGCAAACAAAATCACTTTAACTTGATTTCATTCCCCCTTCA < 41bp 0.855691453099664 0.600625131155877 0.8148849 0.15647128 prediction 0.510132643887573 Functional Loss - GFRAL ENSG00000187871 CDS Human protein_coding chr6:55264050 chr6:55264052 stopgain 0.875 0 23 hm5C_associated_SNPs_63692 0 0 0 0 2 GFRAL chr6:55263978 3'AG 55263978 Downstream 75bp
chr6 55264052 55264052 1 + G T LUSC 55264050 + 55264030 55264070 41 TGCAAACAAAATCACTTTAACTGGATTTCATTCCCCCTTCA TGCAAACAAAATCACTTTAACTTGATTTCATTCCCCCTTCA < 41bp 0.855691453099664 0.600625131155877 0.8148849 0.15647128 prediction 0.510132643887573 Functional Loss - GFRAL ENSG00000187871 CDS Human protein_coding chr6:55264050 chr6:55264052 stopgain 0.875 0 23 hm5C_associated_SNPs_63692 0 0 0 0 2 GFRAL chr6:55264073 5'GT 55264073 Upstream 22bp
chr16 4846029 4846029 1 + A T rs549608680 4846025 + 4846005 4846045 41 CCCGGGCCCCGCAGGGAAAGCCCCAGGAAGGTGAGCCCCTG CCCGGGCCCCGCAGGGAAAGCCCCTGGAAGGTGAGCCCCTG < 41bp 0.855829256651744 0.60078107558008 0.18905503 0.12892863 prediction 0.510096362143327 Functional Loss - SMIM22 ENSG00000267795 CDS Human protein_coding chr16:4846025 chr16:4846029 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_63696 0 0 0 0 3 SMIM22 chr16:4845949 3'AG 4845949 Downstream 81bp
chr16 4846029 4846029 1 + A T rs549608680 4846025 + 4846005 4846045 41 CCCGGGCCCCGCAGGGAAAGCCCCAGGAAGGTGAGCCCCTG CCCGGGCCCCGCAGGGAAAGCCCCTGGAAGGTGAGCCCCTG < 41bp 0.855829256651744 0.60078107558008 0.18905503 0.12892863 prediction 0.510096362143327 Functional Loss - SMIM22 ENSG00000267795 CDS Human protein_coding chr16:4846025 chr16:4846029 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_63696 0 0 0 0 3 SMIM22 chr16:4846034 5'GT 4846034 Upstream 6bp
chr16 4846029 4846029 1 + A T rs549608680 4846025 + 4846005 4846045 41 CCCGGGCCCCGCAGGGAAAGCCCCAGGAAGGTGAGCCCCTG CCCGGGCCCCGCAGGGAAAGCCCCTGGAAGGTGAGCCCCTG < 41bp 0.855829256651744 0.60078107558008 0.18905503 0.12892863 prediction 0.510096362143327 Functional Loss - SMIM22 ENSG00000267795 CDS Human protein_coding chr16:4846025 chr16:4846029 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_63696 0 0 0 0 3 SMIM22 chr16:4846049 5'GT 4846049 Upstream 21bp
chr2 10559942 10559942 1 + C T HNSC 10559940 + 10559920 10559960 41 CTGCAGGACCTGCGGGAGAACACGGAGTTCACCGACCACGA CTGCAGGACCTGCGGGAGAACATGGAGTTCACCGACCACGA < 41bp 0.755382349812738 0.500336017876402 0.9215267 0.8019973 prediction 0.510092663872673 Functional Loss - HPCAL1 ENSG00000115756 CDS Human protein_coding chr2:10559940 chr2:10559942 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_63697 0 0 0 0 1 HPCAL1 chr2:10559860 3'AG 10559860 Downstream 83bp
chr2 233322729 233322729 1 + C T STAD 233322727 + 233322707 233322747 41 GGCCTCTTTGAGCCCGGAGACACGAAATATGAGATCCACCG GGCCTCTTTGAGCCCGGAGACATGAAATATGAGATCCACCG < 41bp 0.788132921285483 0.533100241914288 0.28246927 0.36858642 prediction 0.51006535874239 Functional Loss - ALPI ENSG00000163295 CDS Human protein_coding chr2:233322727 chr2:233322729 nonsynonymous SNV 0.766 1 23 hm5C_associated_SNPs_63698 0 0 0 0 1 ALPI chr2:233322708 3'AG 233322708 Downstream 22bp
chr17 38242991 38242991 1 + C T SKCM 38242989 + 38242969 38243009 41 ATTGGCCAGTCACCCATTGTCTCCATGCCGGACGGAGACAA ATTGGCCAGTCACCCATTGTCTTCATGCCGGACGGAGACAA < 41bp 0.836740549263061 0.581713295926406 0.9555136 0.32215714 prediction 0.510054506673312 Functional Loss - THRA ENSG00000126351 CDS Human protein_coding chr17:38242989 chr17:38242991 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_63701 0 0 1 0 1 THRA chr17:38242960 3'AG 38242960 Downstream 32bp
chr16 20435279 20435279 1 + C T LUAD 20435277 + 20435257 20435297 41 GAATCTGACATCTTCTGGAACACGACTGACACTGGCTGGGT GAATCTGACATCTTCTGGAACATGACTGACACTGGCTGGGT < 41bp 0.794867080921394 0.539880165732949 0.08206862 0.12668276 prediction 0.509973830376889 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20435277 chr16:20435279 nonsynonymous SNV 0.958 1 23 hm5C_associated_SNPs_63706 0 0 1 0 1 ACSM5 chr16:20435238 3'AG 20435238 Downstream 42bp
chr19 4491797 4491797 1 + C T SKCM 4491795 + 4491775 4491815 41 GAAGAAAGCAGCGGTCCGGGCGCCACGGAGGGGCCCTCTGG GAAGAAAGCAGCGGTCCGGGCGTCACGGAGGGGCCCTCTGG < 41bp 0.768222374886392 0.513236736976208 0.5279668 0.5457918 prediction 0.509971275820368 Functional Loss - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4491795 chr19:4491797 nonsynonymous SNV 0.430 2 23 hm5C_associated_SNPs_63707 0 0 1 0 2 HDGFL2 chr19:4491761 3'AG 4491761 Downstream 37bp
chr19 4491797 4491797 1 + C T SKCM 4491795 + 4491775 4491815 41 GAAGAAAGCAGCGGTCCGGGCGCCACGGAGGGGCCCTCTGG GAAGAAAGCAGCGGTCCGGGCGTCACGGAGGGGCCCTCTGG < 41bp 0.768222374886392 0.513236736976208 0.5279668 0.5457918 prediction 0.509971275820368 Functional Loss - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4491795 chr19:4491797 nonsynonymous SNV 0.430 2 23 hm5C_associated_SNPs_63707 0 0 1 0 2 HDGFL2 chr19:4491832 5'GT 4491832 Upstream 36bp
chr10 81373541 81373541 1 + C T COAD 81373539 + 81373519 81373559 41 ACAGTAGGAGAGAAGGTCTTCTCCAGCAATGGGCAGTCCAT ACAGTAGGAGAGAAGGTCTTCTTCAGCAATGGGCAGTCCAT < 41bp 0.754981790574098 0.48104102421764 0.9478184 0.39043877 prediction 0.509963581148196 Functional Loss - SFTPA1 ENSG00000122852 CDS Human protein_coding chr10:81373539 chr10:81373541 nonsynonymous SNV 0.505 1 23 hm5C_associated_SNPs_63708 0 0 0 0 1 SFTPA1 chr10:81373493 3'AG 81373493 Downstream 49bp
chr2 27320496 27320496 1 + G T LUSC 27320494 + 27320474 27320514 41 AGCCACGAGAGGAGCTCTTCCAGCTGTTTGGCTACGGAGAC AGCCACGAGAGGAGCTCTTCCATCTGTTTGGCTACGGAGAC < 41bp 0.75498160672722 0.408637776345652 0.45124966 0.25942427 prediction 0.50996321345444 Functional Loss - KHK ENSG00000138030 CDS Human protein_coding chr2:27320494 chr2:27320496 nonsynonymous SNV 0.870 2 23 hm5C_associated_SNPs_63709 0 0 1 0 1 KHK chr2:27320517 5'GT 27320517 Upstream 22bp
chr17 37667857 37667857 1 + A C BRCA 37667856 + 37667836 37667876 41 GCTAGGAGAGGAACGTTACACACCAGCCATAGATGTTTGGA GCTAGGAGAGGAACGTTACACCCCAGCCATAGATGTTTGGA < 41bp 0.757416606405918 0.502437302156564 0.15491071 0.04954198 prediction 0.509958608498708 Functional Loss - CDK12 ENSG00000167258 CDS Human protein_coding chr17:37667856 chr17:37667857 synonymous SNV . 0 22 hm5C_associated_SNPs_63710 0 0 1 0 2 CDK12 chr17:37667782 3'AG 37667782 Downstream 76bp
chr17 37667857 37667857 1 + A C BRCA 37667856 + 37667836 37667876 41 GCTAGGAGAGGAACGTTACACACCAGCCATAGATGTTTGGA GCTAGGAGAGGAACGTTACACCCCAGCCATAGATGTTTGGA < 41bp 0.757416606405918 0.502437302156564 0.15491071 0.04954198 prediction 0.509958608498708 Functional Loss - CDK12 ENSG00000167258 CDS Human protein_coding chr17:37667856 chr17:37667857 synonymous SNV . 0 22 hm5C_associated_SNPs_63710 0 0 1 0 2 CDK12 chr17:37667883 5'GT 37667883 Upstream 27bp
chr1 177247750 177247750 1 + C T SKCM 177247748 + 177247728 177247768 41 CCCGATGACCGGTTCCTGAACTCCACAGCTATCTCCCAGTT CCCGATGACCGGTTCCTGAACTTCACAGCTATCTCCCAGTT < 41bp 0.837723152375328 0.582745327221598 0.8649516 0.075858355 prediction 0.50995565030746 Functional Loss - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177247748 chr1:177247750 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_63711 0 0 0 0 1 BRINP2 chr1:177247699 3'AG 177247699 Downstream 52bp
chr13 53616150 53616150 1 + G T HNSC 53616147 + 53616127 53616167 41 ATACCATTTCTTACACTGAACTGGACTTCGAGCTGATCAAG ATACCATTTCTTACACTGAACTGTACTTCGAGCTGATCAAG < 41bp 0.754977487358229 0.376193901439743 0.26223373 0.12980932 prediction 0.509954974716459 Functional Loss - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53616147 chr13:53616150 nonsynonymous SNV 0.975 3 24 hm5C_associated_SNPs_63712 0 0 0 0 1 OLFM4 chr13:53616167 5'GT 53616167 Upstream 18bp
chr9 131847525 131847525 1 + C T SKCM 131847523 + 131847503 131847543 41 GGCACCAAGTACGGGATGCCCTCCAGCCATTCCCAGTTTAT GGCACCAAGTACGGGATGCCCTTCAGCCATTCCCAGTTTAT < 41bp 0.824970418064821 0.570006379948742 0.93659025 0.040289313 prediction 0.50992807623216 Functional Loss - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131847523 chr9:131847525 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_63714 0 0 0 0 2 DOLPP1 chr9:131847486 3'AG 131847486 Downstream 40bp
chr9 131847525 131847525 1 + C T SKCM 131847523 + 131847503 131847543 41 GGCACCAAGTACGGGATGCCCTCCAGCCATTCCCAGTTTAT GGCACCAAGTACGGGATGCCCTTCAGCCATTCCCAGTTTAT < 41bp 0.824970418064821 0.570006379948742 0.93659025 0.040289313 prediction 0.50992807623216 Functional Loss - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131847523 chr9:131847525 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_63714 0 0 0 0 2 DOLPP1 chr9:131847585 5'GT 131847585 Upstream 61bp
chr12 6647133 6647133 1 + C T LUAD 6647131 + 6647111 6647151 41 ACGCTGGGGCTGGCATTGCCCTCAACGACCACTTTGTCAAG ACGCTGGGGCTGGCATTGCCCTTAACGACCACTTTGTCAAG < 41bp 0.8077328991556 0.552768871602093 0.04043594 0.029714853 prediction 0.509928055107014 Functional Loss - GAPDH ENSG00000111640 CDS Human protein_coding chr12:6647131 chr12:6647133 synonymous SNV . 0 23 hm5C_associated_SNPs_63715 0 0 1 0 1 GAPDH chr12:6647162 5'GT 6647162 Upstream 30bp
chr1 115576117 115576117 1 + C T SKCM 115576115 + 115576095 115576135 41 TATTGCCTAACCATCAACACCACCATCTGTGCTGGATATTG TATTGCCTAACCATCAACACCATCATCTGTGCTGGATATTG < 41bp 0.754960710759118 0.479362173718768 0.014460057 0.012509108 prediction 0.509921421518236 Functional Loss - TSHB ENSG00000134200 CDS Human protein_coding chr1:115576115 chr1:115576117 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_63717 0 0 0 0 1 TSHB chr1:115576145 5'GT 115576145 Upstream 29bp
chr2 219679674 219679674 1 + G T CESC 219679671 + 219679651 219679691 41 GGTGGTCCTGGCCCCGGAGACGGGGGAGTTGAAGAGTGTGG GGTGGTCCTGGCCCCGGAGACGGTGGAGTTGAAGAGTGTGG < 41bp 0.916652852548902 0.661699872072942 0.9247284 0.46328786 prediction 0.50990596095192 Functional Loss - CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219679671 chr2:219679674 nonsynonymous SNV 0.027 1 24 hm5C_associated_SNPs_63718 0 0 1 0 1 CYP27A1 chr2:219679634 3'AG 219679634 Downstream 41bp
chr1 207263727 207263727 1 + G T GBM 207263724 + 207263704 207263744 41 AGGAGGTGGAAGGACAGATTCTGGGGACTTACGTTTGTATC AGGAGGTGGAAGGACAGATTCTGTGGACTTACGTTTGTATC < 41bp 0.914359764987789 0.659410760396928 0.899515 0.4331022 prediction 0.509898009181723 Functional Loss - C4BPB ENSG00000123843 CDS Human protein_coding chr1:207263724 chr1:207263727 nonsynonymous SNV 0.218 4 24 hm5C_associated_SNPs_63720 0 0 1 0 3 C4BPB chr1:207263653 3'AG 207263653 Downstream 75bp
chr1 207263727 207263727 1 + G T GBM 207263724 + 207263704 207263744 41 AGGAGGTGGAAGGACAGATTCTGGGGACTTACGTTTGTATC AGGAGGTGGAAGGACAGATTCTGTGGACTTACGTTTGTATC < 41bp 0.914359764987789 0.659410760396928 0.899515 0.4331022 prediction 0.509898009181723 Functional Loss - C4BPB ENSG00000123843 CDS Human protein_coding chr1:207263724 chr1:207263727 nonsynonymous SNV 0.218 4 24 hm5C_associated_SNPs_63720 0 0 1 0 3 C4BPB chr1:207263656 3'AG 207263656 Downstream 72bp
chr1 207263727 207263727 1 + G T GBM 207263724 + 207263704 207263744 41 AGGAGGTGGAAGGACAGATTCTGGGGACTTACGTTTGTATC AGGAGGTGGAAGGACAGATTCTGTGGACTTACGTTTGTATC < 41bp 0.914359764987789 0.659410760396928 0.899515 0.4331022 prediction 0.509898009181723 Functional Loss - C4BPB ENSG00000123843 CDS Human protein_coding chr1:207263724 chr1:207263727 nonsynonymous SNV 0.218 4 24 hm5C_associated_SNPs_63720 0 0 1 0 3 C4BPB chr1:207263826 5'GT 207263826 Upstream 100bp
chr8 107705019 107705019 1 + C T SKCM 107705017 + 107704997 107705037 41 TTTCACTGGTATTCGACCTGCACGAGTTGTATCTTCAACTT TTTCACTGGTATTCGACCTGCATGAGTTGTATCTTCAACTT < 41bp 0.782412531494577 0.527468453338427 0.06143099 0.20936033 prediction 0.5098881563123 Functional Loss - OXR1 ENSG00000164830 CDS Human protein_coding chr8:107705017 chr8:107705019 stopgain 0.859 1 23 hm5C_associated_SNPs_63723 0 0 1 0 2 OXR1 chr8:107704956 3'AG 107704956 Downstream 64bp
chr8 107705019 107705019 1 + C T SKCM 107705017 + 107704997 107705037 41 TTTCACTGGTATTCGACCTGCACGAGTTGTATCTTCAACTT TTTCACTGGTATTCGACCTGCATGAGTTGTATCTTCAACTT < 41bp 0.782412531494577 0.527468453338427 0.06143099 0.20936033 prediction 0.5098881563123 Functional Loss - OXR1 ENSG00000164830 CDS Human protein_coding chr8:107705017 chr8:107705019 stopgain 0.859 1 23 hm5C_associated_SNPs_63723 0 0 1 0 2 OXR1 chr8:107705105 5'GT 107705105 Upstream 87bp
chr5 5232579 5232579 1 + G T LUAD 5232576 + 5232556 5232596 41 TCTTCTTGGTCCCCATGCTCCAGGACCTGCGGAGGGGGAGT TCTTCTTGGTCCCCATGCTCCAGTACCTGCGGAGGGGGAGT < 41bp 0.75493849593604 0.353786410443498 0.7038834 0.20236978 prediction 0.509876991872081 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5232576 chr5:5232579 nonsynonymous SNV 0.982 4 24 hm5C_associated_SNPs_63724 0 0 0 0 2 ADAMTS16 chr5:5232481 3'AG 5232481 Downstream 99bp
chr5 5232579 5232579 1 + G T LUAD 5232576 + 5232556 5232596 41 TCTTCTTGGTCCCCATGCTCCAGGACCTGCGGAGGGGGAGT TCTTCTTGGTCCCCATGCTCCAGTACCTGCGGAGGGGGAGT < 41bp 0.75493849593604 0.353786410443498 0.7038834 0.20236978 prediction 0.509876991872081 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5232576 chr5:5232579 nonsynonymous SNV 0.982 4 24 hm5C_associated_SNPs_63724 0 0 0 0 2 ADAMTS16 chr5:5232629 5'GT 5232629 Upstream 51bp
chr1 207297592 207297592 1 + G T UCEC 207297590 + 207297570 207297610 41 GAAGAAAATTTCTACGCATACGGCTTTTCTGTCACCTACAG GAAGAAAATTTCTACGCATACGTCTTTTCTGTCACCTACAG < 41bp 0.754928264473949 0.409882016081149 0.13706207 0.037057936 prediction 0.509856528947898 Functional Loss - C4BPA ENSG00000123838 CDS Human protein_coding chr1:207297590 chr1:207297592 nonsynonymous SNV 0.000 3 23 hm5C_associated_SNPs_63725 0 0 0 0 1 C4BPA chr1:207297520 3'AG 207297520 Downstream 73bp
chr8 1513999 1513999 1 + G T LUAD 1513997 + 1513977 1514017 41 CCCCAAGACATCACCAAAGTCGGCAATCCTACCAGAGCCGC CCCCAAGACATCACCAAAGTCGTCAATCCTACCAGAGCCGC < 41bp 0.754920105954119 0.410610109410081 0.21582755 0.053901494 prediction 0.509840211908238 Functional Loss - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1513997 chr8:1513999 nonsynonymous SNV 0.005 1 23 hm5C_associated_SNPs_63727 0 0 0 0 1 DLGAP2 chr8:1514060 5'GT 1514060 Upstream 62bp
chr7 150171185 150171185 1 + C T LUAD 150171183 + 150171163 150171203 41 CAGTCCTCCTTGTGGGGAAACGCGGTGCTGGAAAAAGTGCA CAGTCCTCCTTGTGGGGAAACGTGGTGCTGGAAAAAGTGCA < 41bp 0.782195317468085 0.527277221166345 0.8884876 0.6944004 prediction 0.509836192603481 Functional Loss - GIMAP8 ENSG00000171115 CDS Human protein_coding chr7:150171183 chr7:150171185 synonymous SNV . 0 23 hm5C_associated_SNPs_63728 0 0 0 0 1 GIMAP8 chr7:150171100 3'AG 150171100 Downstream 86bp
chr18 76756931 76756931 1 + G T UCEC 76756928 + 76756908 76756948 41 CATGTGGAATAACGCCCCCGCGAGACGCGGCCGCCGCCTGT CATGTGGAATAACGCCCCCGCGATACGCGGCCGCCGCCTGT < 41bp 0.754916491249891 0.358659519666413 0.891182 0.2930745 prediction 0.509832982499782 Functional Loss - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76756928 chr18:76756931 nonsynonymous SNV 0.926 4 24 hm5C_associated_SNPs_63729 0 0 0 0 1 SALL3 chr18:76756891 3'AG 76756891 Downstream 41bp
chr2 157406137 157406137 1 + C T BLCA 157406135 + 157406115 157406155 41 TGCAGGACAACATAACGATGCACGGATGAACCTTGCCATTG TGCAGGACAACATAACGATGCATGGATGAACCTTGCCATTG < 41bp 0.77143616519133 0.516522425722086 0.1262773 0.17628244 prediction 0.509827478938487 Functional Loss - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157406135 chr2:157406137 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_63731 0 0 1 1 1 GPD2 chr2:157406120 3'AG 157406120 Downstream 18bp
chr12 64889308 64889308 1 + G C UCEC 64889307 + 64889287 64889327 41 GAAACCAGTCTTCAGGATATCGACAGCAGATTATCTCCAGG GAAACCAGTCTTCAGGATATCCACAGCAGATTATCTCCAGG < 41bp 0.833519146821316 0.578605847941736 0.34200403 0.13404045 prediction 0.50982659775916 Functional Loss - TBK1 ENSG00000183735 CDS Human protein_coding chr12:64889307 chr12:64889308 nonsynonymous SNV 0.099 0 22 hm5C_associated_SNPs_63732 0 0 1 0 2 TBK1 chr12:64889263 3'AG 64889263 Downstream 46bp
chr12 64889308 64889308 1 + G C UCEC 64889307 + 64889287 64889327 41 GAAACCAGTCTTCAGGATATCGACAGCAGATTATCTCCAGG GAAACCAGTCTTCAGGATATCCACAGCAGATTATCTCCAGG < 41bp 0.833519146821316 0.578605847941736 0.34200403 0.13404045 prediction 0.50982659775916 Functional Loss - TBK1 ENSG00000183735 CDS Human protein_coding chr12:64889307 chr12:64889308 nonsynonymous SNV 0.099 0 22 hm5C_associated_SNPs_63732 0 0 1 0 2 TBK1 chr12:64889384 5'GT 64889384 Upstream 77bp
chr22 24916417 24916417 1 + C T SKCM 24916415 + 24916395 24916435 41 GCCAATCACTGCTTCACCTGCGCCATCAATCGAGTGGGCAC GCCAATCACTGCTTCACCTGCGTCATCAATCGAGTGGGCAC < 41bp 0.795144830991936 0.540235001095625 0.10217559 0.11454737 prediction 0.509819659792622 Functional Loss - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24916415 chr22:24916417 nonsynonymous SNV 0.479 4 23 hm5C_associated_SNPs_63733 0 0 0 0 2 UPB1 chr22:24916355 3'AG 24916355 Downstream 63bp
chr22 24916417 24916417 1 + C T SKCM 24916415 + 24916395 24916435 41 GCCAATCACTGCTTCACCTGCGCCATCAATCGAGTGGGCAC GCCAATCACTGCTTCACCTGCGTCATCAATCGAGTGGGCAC < 41bp 0.795144830991936 0.540235001095625 0.10217559 0.11454737 prediction 0.509819659792622 Functional Loss - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24916415 chr22:24916417 nonsynonymous SNV 0.479 4 23 hm5C_associated_SNPs_63733 0 0 0 0 2 UPB1 chr22:24916436 5'GT 24916436 Upstream 20bp
chr20 47612370 47612370 1 + G T UCEC 47612367 + 47612347 47612387 41 AAAGACAGATGGCCAGCTTCCAAGAATCGGTTGGTGAGACC AAAGACAGATGGCCAGCTTCCAATAATCGGTTGGTGAGACC < 41bp 0.754909388171301 0.38240776906412 0.55947113 0.12237817 prediction 0.509818776342602 Functional Loss - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47612367 chr20:47612370 stopgain 0.998 1 24 hm5C_associated_SNPs_63735 0 0 1 0 2 ARFGEF2 chr20:47612320 3'AG 47612320 Downstream 51bp
chr20 47612370 47612370 1 + G T UCEC 47612367 + 47612347 47612387 41 AAAGACAGATGGCCAGCTTCCAAGAATCGGTTGGTGAGACC AAAGACAGATGGCCAGCTTCCAATAATCGGTTGGTGAGACC < 41bp 0.754909388171301 0.38240776906412 0.55947113 0.12237817 prediction 0.509818776342602 Functional Loss - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47612367 chr20:47612370 stopgain 0.998 1 24 hm5C_associated_SNPs_63735 0 0 1 0 2 ARFGEF2 chr20:47612419 5'GT 47612419 Upstream 50bp
chr20 47612371 47612371 1 + A C UCEC 47612367 + 47612347 47612387 41 AAAGACAGATGGCCAGCTTCCAAGAATCGGTTGGTGAGACC AAAGACAGATGGCCAGCTTCCAAGCATCGGTTGGTGAGACC < 41bp 0.754909388171301 0.34905811685596 0.55947113 0.4501803 prediction 0.509818776342602 Functional Loss - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47612367 chr20:47612371 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_63736 0 0 1 0 2 ARFGEF2 chr20:47612320 3'AG 47612320 Downstream 52bp
chr20 47612371 47612371 1 + A C UCEC 47612367 + 47612347 47612387 41 AAAGACAGATGGCCAGCTTCCAAGAATCGGTTGGTGAGACC AAAGACAGATGGCCAGCTTCCAAGCATCGGTTGGTGAGACC < 41bp 0.754909388171301 0.34905811685596 0.55947113 0.4501803 prediction 0.509818776342602 Functional Loss - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47612367 chr20:47612371 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_63736 0 0 1 0 2 ARFGEF2 chr20:47612419 5'GT 47612419 Upstream 49bp
chr19 7986363 7986363 1 + A C STAD 7986359 + 7986339 7986379 41 GCGTAGCCCGGGAGGCCATTCAGAAAGTGCATCCGGGTGGC GCGTAGCCCGGGAGGCCATTCAGACAGTGCATCCGGGTGGC < 41bp 0.920089315881648 0.665180241062133 0.7852731 0.30183804 prediction 0.509818149639029 Functional Loss - SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7986359 chr19:7986363 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_63737 0 0 1 0 2 SNAPC2 chr19:7986308 3'AG 7986308 Downstream 56bp
chr19 7986363 7986363 1 + A C STAD 7986359 + 7986339 7986379 41 GCGTAGCCCGGGAGGCCATTCAGAAAGTGCATCCGGGTGGC GCGTAGCCCGGGAGGCCATTCAGACAGTGCATCCGGGTGGC < 41bp 0.920089315881648 0.665180241062133 0.7852731 0.30183804 prediction 0.509818149639029 Functional Loss - SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7986359 chr19:7986363 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_63737 0 0 1 0 2 SNAPC2 chr19:7986427 5'GT 7986427 Upstream 65bp
chr6 153078250 153078250 1 + G T LUSC 153078247 + 153078227 153078267 41 GCAGCAGTGAGGGAGAATCTCCCGACTTTCCAGAAGAGTTA GCAGCAGTGAGGGAGAATCTCCCTACTTTCCAGAAGAGTTA < 41bp 0.754908413145798 0.39241565327884 0.13975415 0.091798544 prediction 0.509816826291596 Functional Loss - VIP ENSG00000146469 CDS Human protein_coding chr6:153078247 chr6:153078250 nonsynonymous SNV 0.972 2 24 hm5C_associated_SNPs_63738 0 0 0 0 3 VIP chr6:153078231 3'AG 153078231 Downstream 20bp
chr6 153078250 153078250 1 + G T LUSC 153078247 + 153078227 153078267 41 GCAGCAGTGAGGGAGAATCTCCCGACTTTCCAGAAGAGTTA GCAGCAGTGAGGGAGAATCTCCCTACTTTCCAGAAGAGTTA < 41bp 0.754908413145798 0.39241565327884 0.13975415 0.091798544 prediction 0.509816826291596 Functional Loss - VIP ENSG00000146469 CDS Human protein_coding chr6:153078247 chr6:153078250 nonsynonymous SNV 0.972 2 24 hm5C_associated_SNPs_63738 0 0 0 0 3 VIP chr6:153078234 3'AG 153078234 Downstream 17bp
chr6 153078250 153078250 1 + G T LUSC 153078247 + 153078227 153078267 41 GCAGCAGTGAGGGAGAATCTCCCGACTTTCCAGAAGAGTTA GCAGCAGTGAGGGAGAATCTCCCTACTTTCCAGAAGAGTTA < 41bp 0.754908413145798 0.39241565327884 0.13975415 0.091798544 prediction 0.509816826291596 Functional Loss - VIP ENSG00000146469 CDS Human protein_coding chr6:153078247 chr6:153078250 nonsynonymous SNV 0.972 2 24 hm5C_associated_SNPs_63738 0 0 0 0 3 VIP chr6:153078319 5'GT 153078319 Upstream 70bp
chr3 130698210 130698210 1 + G T UCEC 130698207 + 130698187 130698227 41 TGTTACAACACTCATTGCCTCAGGAGTATCAATAAAAATGA TGTTACAACACTCATTGCCTCAGTAGTATCAATAAAAATGA < 41bp 0.754901734273193 0.403871364779993 0.7988234 0.071787566 prediction 0.509803468546385 Functional Loss - ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130698207 chr3:130698210 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_63740 0 0 1 0 1 ATP2C1 chr3:130698263 5'GT 130698263 Upstream 54bp
chr1 176668660 176668660 1 + C T rs148565646 176668658 + 176668638 176668678 41 CTGTGAGGTACCAGGTTCTCCGCGATCCCCCATTTGCCAGT CTGTGAGGTACCAGGTTCTCCGTGATCCCCCATTTGCCAGT < 41bp 0.770553401246895 0.51565531764671 0.62544036 0.315839 prediction 0.509796167200369 Functional Loss - PAPPA2 ENSG00000116183 CDS Human protein_coding chr1:176668658 chr1:176668660 synonymous SNV . 0 23 hm5C_associated_SNPs_63742 0 0 0 0 1 PAPPA2 chr1:176668725 5'GT 176668725 Upstream 66bp
chr19 16620383 16620383 1 + C T UCEC 16620381 + 16620361 16620401 41 GCGTCCACTGGGCAGGATGCCCCGAGGCAGGCCCAGGCGAG GCGTCCACTGGGCAGGATGCCCTGAGGCAGGCCCAGGCGAG < 41bp 0.754886624751514 0.496610816679962 0.30381465 0.21936941 prediction 0.509773249503028 Functional Loss - C19orf44 ENSG00000105072 CDS Human protein_coding chr19:16620381 chr19:16620383 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_63744 0 0 1 0 1 C19orf44 chr19:16620310 3'AG 16620310 Downstream 74bp
chrX 70523745 70523745 1 + A C HNSC 70523744 + 70523724 70523764 41 CAGGGTGCAGAGTCGGTAGACATGACTGGGGGAAGCAGGTA CAGGGTGCAGAGTCGGTAGACCTGACTGGGGGAAGCAGGTA < 41bp 0.756866550492243 0.501980761620841 0.42223606 0.4283095 prediction 0.509771577742803 Functional Loss - ITGB1BP2 ENSG00000147166 CDS Human protein_coding chrX:70523744 chrX:70523745 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_63745 0 0 0 0 2 ITGB1BP2 chrX:70523662 3'AG 70523662 Downstream 84bp
chrX 70523745 70523745 1 + A C HNSC 70523744 + 70523724 70523764 41 CAGGGTGCAGAGTCGGTAGACATGACTGGGGGAAGCAGGTA CAGGGTGCAGAGTCGGTAGACCTGACTGGGGGAAGCAGGTA < 41bp 0.756866550492243 0.501980761620841 0.42223606 0.4283095 prediction 0.509771577742803 Functional Loss - ITGB1BP2 ENSG00000147166 CDS Human protein_coding chrX:70523744 chrX:70523745 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_63745 0 0 0 0 2 ITGB1BP2 chrX:70523761 5'GT 70523761 Upstream 17bp
chr19 50000835 50000835 1 + G C LUSC 50000834 + 50000814 50000854 41 TCACTGGTAATGTGTCCATTCGAGGGCGGATCCTCTCTGGT TCACTGGTAATGTGTCCATTCCAGGGCGGATCCTCTCTGGT < 41bp 0.862764874759248 0.607887864834422 0.9395223 0.9136267 prediction 0.509754019849652 Functional Loss - RPS11 ENSG00000142534 CDS Human protein_coding chr19:50000834 chr19:50000835 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_63748 0 0 1 0 2 RPS11 chr19:50000777 3'AG 50000777 Downstream 59bp
chr19 50000835 50000835 1 + G C LUSC 50000834 + 50000814 50000854 41 TCACTGGTAATGTGTCCATTCGAGGGCGGATCCTCTCTGGT TCACTGGTAATGTGTCCATTCCAGGGCGGATCCTCTCTGGT < 41bp 0.862764874759248 0.607887864834422 0.9395223 0.9136267 prediction 0.509754019849652 Functional Loss - RPS11 ENSG00000142534 CDS Human protein_coding chr19:50000834 chr19:50000835 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_63748 0 0 1 0 2 RPS11 chr19:50000852 5'GT 50000852 Upstream 18bp
chr1 241712984 241712984 1 + A T STAD 241712980 + 241712960 241713000 41 TGCTTCCAATGTCTCAGATACTCGAGTGGCTACCTTCACAC TGCTTCCAATGTCTCAGATACTCGTGTGGCTACCTTCACAC < 41bp 0.876931242694621 0.622055437524485 0.8593631 0.27159023 prediction 0.509751610340273 Functional Loss - KMO ENSG00000117009 CDS Human protein_coding chr1:241712980 chr1:241712984 synonymous SNV . 0 25 hm5C_associated_SNPs_63750 0 0 0 0 2 KMO chr1:241712977 3'AG 241712977 Downstream 8bp
chr1 241712984 241712984 1 + A T STAD 241712980 + 241712960 241713000 41 TGCTTCCAATGTCTCAGATACTCGAGTGGCTACCTTCACAC TGCTTCCAATGTCTCAGATACTCGTGTGGCTACCTTCACAC < 41bp 0.876931242694621 0.622055437524485 0.8593631 0.27159023 prediction 0.509751610340273 Functional Loss - KMO ENSG00000117009 CDS Human protein_coding chr1:241712980 chr1:241712984 synonymous SNV . 0 25 hm5C_associated_SNPs_63750 0 0 0 0 2 KMO chr1:241713074 5'GT 241713074 Upstream 91bp
chr1 40881966 40881966 1 + C T SKCM 40881964 + 40881944 40881984 41 AAGAAACAGCTCTCTAAAGACTCCATTCTTTCACTGTATGG AAGAAACAGCTCTCTAAAGACTTCATTCTTTCACTGTATGG < 41bp 0.754874670829291 0.455848340253591 0.9522227 0.09466514 prediction 0.509749341658582 Functional Loss - SMAP2 ENSG00000084070 CDS Human protein_coding chr1:40881964 chr1:40881966 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_63752 0 0 1 0 1 SMAP2 chr1:40882013 5'GT 40882013 Upstream 48bp
chrX 103173509 103173509 1 - C G rs182045417 103173510 - 103173490 103173530 41 TCGCTTAGCGGCCCAGGAGGCGCCAGCGATCCTGTTCCCCT TCGCTTAGCGGCCCAGGAGGCCCCAGCGATCCTGTTCCCCT < 41bp 0.835430721507319 0.580557055394139 0.6350984 0.4292131 prediction 0.509747332226361 Functional Loss - LOC100128594 ENSG00000231728 ncRNA_exonic Human antisense chrX:103173510 chrX:103173509 . . 0 22 hm5C_associated_SNPs_63753 0 0 0 0 1 LOC100128594 chrX:103173415 5'GT 103173415 Upstream 95bp
chr19 19153613 19153613 1 + C T UCEC 19153611 + 19153591 19153631 41 AGACCTTTGATGCAGCTGTGCGCGAGAACATCGAGGAGTTT AGACCTTTGATGCAGCTGTGCGTGAGAACATCGAGGAGTTT < 41bp 0.784883077280564 0.530012050064606 0.087685674 0.05987948 prediction 0.509742054431916 Functional Loss - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19153611 chr19:19153613 synonymous SNV . 0 23 hm5C_associated_SNPs_63754 0 0 1 0 2 ARMC6 chr19:19153520 3'AG 19153520 Downstream 94bp
chr19 19153613 19153613 1 + C T UCEC 19153611 + 19153591 19153631 41 AGACCTTTGATGCAGCTGTGCGCGAGAACATCGAGGAGTTT AGACCTTTGATGCAGCTGTGCGTGAGAACATCGAGGAGTTT < 41bp 0.784883077280564 0.530012050064606 0.087685674 0.05987948 prediction 0.509742054431916 Functional Loss - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19153611 chr19:19153613 synonymous SNV . 0 23 hm5C_associated_SNPs_63754 0 0 1 0 2 ARMC6 chr19:19153686 5'GT 19153686 Upstream 74bp
chr3 42234641 42234641 1 + G T BLCA 42234638 + 42234618 42234658 41 CGGAAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTG CGGAAGATGCTGCCCGCCAGCAATAGGAGATCACACACCTG < 41bp 0.754868053934995 0.379688492771727 0.8915061 0.53657085 prediction 0.509736107869991 Functional Loss - TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42234638 chr3:42234641 stopgain 0.994 1 24 hm5C_associated_SNPs_63755 0 0 1 0 2 TRAK1 chr3:42234567 3'AG 42234567 Downstream 75bp
chr3 42234641 42234641 1 + G T BLCA 42234638 + 42234618 42234658 41 CGGAAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTG CGGAAGATGCTGCCCGCCAGCAATAGGAGATCACACACCTG < 41bp 0.754868053934995 0.379688492771727 0.8915061 0.53657085 prediction 0.509736107869991 Functional Loss - TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42234638 chr3:42234641 stopgain 0.994 1 24 hm5C_associated_SNPs_63755 0 0 1 0 2 TRAK1 chr3:42234697 5'GT 42234697 Upstream 57bp
chr2 196581704 196581704 1 + C T UCEC 196581702 + 196581682 196581722 41 TGATCATGGGGGATGGCATCCACAACTTCAGTGATGGGCTC TGATCATGGGGGATGGCATCCATAACTTCAGTGATGGGCTC < 41bp 0.754864849294861 0.473381206565542 0.11738488 0.07242912 prediction 0.509729698589722 Functional Loss - SLC39A10 ENSG00000196950 CDS Human protein_coding chr2:196581702 chr2:196581704 synonymous SNV . 0 23 hm5C_associated_SNPs_63758 0 0 1 0 1 SLC39A10 chr2:196581729 5'GT 196581729 Upstream 26bp
chr1 244715699 244715699 1 + G T LUAD 244715697 + 244715677 244715717 41 GAGGAAACCAAGTTACTTTTCAGGATTGCTTTATTGCAGAT GAGGAAACCAAGTTACTTTTCATGATTGCTTTATTGCAGAT < 41bp 0.754862543471049 0.43387862840578 0.74186295 0.12861273 prediction 0.509725086942099 Functional Loss - CATSPERE ENSG00000179397 CDS Human protein_coding chr1:244715697 chr1:244715699 nonsynonymous SNV 0.041 3 23 hm5C_associated_SNPs_63759 0 0 0 0 1 CATSPERE chr1:244715624 3'AG 244715624 Downstream 76bp
chr1 27676231 27676231 1 + C T CESC 27676229 + 27676209 27676249 41 CGCATGCTCAGCAGCAGCTCCTCGGTGTCCAGCCTTAACTC CGCATGCTCAGCAGCAGCTCCTTGGTGTCCAGCCTTAACTC < 41bp 0.754859949727516 0.498596939069102 0.096407175 0.05796507 prediction 0.509719899455031 Functional Loss - SYTL1 ENSG00000142765 CDS Human protein_coding chr1:27676229 chr1:27676231 nonsynonymous SNV 0.975 2 23 hm5C_associated_SNPs_63761 0 0 1 0 2 SYTL1 chr1:27676143 3'AG 27676143 Downstream 89bp
chr1 27676231 27676231 1 + C T CESC 27676229 + 27676209 27676249 41 CGCATGCTCAGCAGCAGCTCCTCGGTGTCCAGCCTTAACTC CGCATGCTCAGCAGCAGCTCCTTGGTGTCCAGCCTTAACTC < 41bp 0.754859949727516 0.498596939069102 0.096407175 0.05796507 prediction 0.509719899455031 Functional Loss - SYTL1 ENSG00000142765 CDS Human protein_coding chr1:27676229 chr1:27676231 nonsynonymous SNV 0.975 2 23 hm5C_associated_SNPs_63761 0 0 1 0 2 SYTL1 chr1:27676256 5'GT 27676256 Upstream 26bp
chr2 73441463 73441463 1 + G T LUAD 73441460 + 73441440 73441480 41 GCGGGCCGCGCGCGGGTCTCCGTGGAAGTCCGTTTCGTGAG GCGGGCCGCGCGCGGGTCTCCGTTGAAGTCCGTTTCGTGAG < 41bp 0.906298902496677 0.651439076723813 0.74605596 0.30849752 prediction 0.509719651545729 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73441460 chr2:73441463 synonymous SNV . 0 24 hm5C_associated_SNPs_63762 0 0 1 0 1 SMYD5 chr2:73441490 5'GT 73441490 Upstream 28bp
chr19 17988568 17988568 1 + G T SKCM 17988565 + 17988545 17988585 41 CCGAGGAGCCGCTATACATTCTGGACTTTTGTGGTGGGTGG CCGAGGAGCCGCTATACATTCTGTACTTTTGTGGTGGGTGG < 41bp 0.914748939438974 0.659894923554575 0.36863476 0.16098732 prediction 0.509708031768797 Functional Loss - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17988565 chr19:17988568 nonsynonymous SNV 0.936 5 24 hm5C_associated_SNPs_63765 0 0 0 0 1 SLC5A5 chr19:17988532 3'AG 17988532 Downstream 37bp
chr22 44379823 44379823 1 + G T THYM 44379820 + 44379800 44379840 41 TGTTTTGTCCTAGGTTTTACCTTGGGGGACCCACAAGCATC TGTTTTGTCCTAGGTTTTACCTTTGGGGACCCACAAGCATC < 41bp 0.754852147474557 0.353571024060003 0.34467572 0.094827294 prediction 0.509704294949115 Functional Loss - SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44379820 chr22:44379823 nonsynonymous SNV 0.024 4 24 hm5C_associated_SNPs_63766 0 0 1 0 2 SAMM50 chr22:44379813 3'AG 44379813 Downstream 11bp
chr22 44379823 44379823 1 + G T THYM 44379820 + 44379800 44379840 41 TGTTTTGTCCTAGGTTTTACCTTGGGGGACCCACAAGCATC TGTTTTGTCCTAGGTTTTACCTTTGGGGACCCACAAGCATC < 41bp 0.754852147474557 0.353571024060003 0.34467572 0.094827294 prediction 0.509704294949115 Functional Loss - SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44379820 chr22:44379823 nonsynonymous SNV 0.024 4 24 hm5C_associated_SNPs_63766 0 0 1 0 2 SAMM50 chr22:44379880 5'GT 44379880 Upstream 58bp
chrX 142121865 142121865 1 + G T UCEC 142121863 + 142121843 142121883 41 TGAACAGAGTTTGAAAGAGACAGAAAAAGCAAAATATCCAA TGAACAGAGTTTGAAAGAGACATAAAAAGCAAAATATCCAA < 41bp 0.866851055649554 0.612000340433666 0.34177172 0.12598783 prediction 0.509701430431776 Functional Loss - SPANXN4 ENSG00000189326 CDS Human protein_coding chrX:142121863 chrX:142121865 stopgain 0.009 0 23 hm5C_associated_SNPs_63768 0 0 0 0 1 SPANXN4 chrX:142121811 3'AG 142121811 Downstream 55bp
chr10 114173031 114173031 1 + C T rs374513448 114173029 + 114173009 114173049 41 TTGAAGCCCACATTGTTTCCCGCGGTGCCTCGACTCCTTAA TTGAAGCCCACATTGTTTCCCGTGGTGCCTCGACTCCTTAA < 41bp 0.790209733558849 0.535361732375045 0.52763623 0.49161103 prediction 0.509696002367609 Functional Loss - ACSL5 ENSG00000197142 CDS Human protein_coding chr10:114173029 chr10:114173031 nonsynonymous SNV 0.087 0 23 hm5C_associated_SNPs_63769 0 0 1 0 1 ACSL5 chr10:114173065 5'GT 114173065 Upstream 35bp
chr4 17625401 17625401 1 + G T LIHC 17625399 + 17625379 17625419 41 GCAGGCATCTGCCAACATCCCTGCACCTCTGAAGCCAACGT GCAGGCATCTGCCAACATCCCTTCACCTCTGAAGCCAACGT < 41bp 0.864875770231235 0.610035015481927 0.16863558 0.097664446 prediction 0.509681509498615 Functional Loss - MED28 ENSG00000118579 CDS Human protein_coding chr4:17625399 chr4:17625401 nonsynonymous SNV 0.723 4 23 hm5C_associated_SNPs_63772 0 0 1 0 1 MED28 chr4:17625417 5'GT 17625417 Upstream 17bp
chr17 6913130 6913130 1 - G A rs139327883 6913132 - 6913112 6913152 41 TGGCGGCATGCTGGGCAGTGCACGTGAAGACGCACATGGTG TGGCGGCATGCTGGGCAGTGCATGTGAAGACGCACATGGTG < 41bp 0.778479772546848 0.523640007998201 0.47860244 0.42126176 prediction 0.509679529097294 Functional Loss - ALOX12 ENSG00000108839;ENSG00000215067 CDS Human other chr17:6913132 chr17:6913130 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_63774 0 0 0 0 2 ALOX12 chr17:6913115 5'GT 6913115 Upstream 16bp
chr17 6913130 6913130 1 - G A rs139327883 6913132 - 6913112 6913152 41 TGGCGGCATGCTGGGCAGTGCACGTGAAGACGCACATGGTG TGGCGGCATGCTGGGCAGTGCATGTGAAGACGCACATGGTG < 41bp 0.778479772546848 0.523640007998201 0.47860244 0.42126176 prediction 0.509679529097294 Functional Loss - ALOX12 ENSG00000108839;ENSG00000215067 CDS Human antisense chr17:6913132 chr17:6913130 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_63774 0 0 0 0 2 ALOX12-AS1 chr17:6913208 3'AG 6913208 Downstream 79bp
chr14 72152311 72152311 1 + C T UCEC 72152309 + 72152289 72152329 41 AGAAAGAGCCGCCAACATCCCTCGAAGCATCTCCAGTGACG AGAAAGAGCCGCCAACATCCCTTGAAGCATCTCCAGTGACG < 41bp 0.81993207065965 0.565108207017987 0.27038068 0.01792115 prediction 0.509647727283326 Functional Loss - SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72152309 chr14:72152311 stopgain 0.995 1 23 hm5C_associated_SNPs_63775 0 0 0 0 1 SIPA1L1 chr14:72152348 5'GT 72152348 Upstream 38bp
chr18 61465933 61465933 1 + G T UCEC 61465931 + 61465911 61465951 41 CTTCAAAGGCAAGTGGCAATCAGCCTTCACCAAGAGCGAAA CTTCAAAGGCAAGTGGCAATCATCCTTCACCAAGAGCGAAA < 41bp 0.754821189510414 0.407199443484519 0.29803342 0.10840815 prediction 0.509642379020827 Functional Loss - SERPINB7 ENSG00000166396 CDS Human protein_coding chr18:61465931 chr18:61465933 nonsynonymous SNV 0.668 2 23 hm5C_associated_SNPs_63776 0 0 0 0 2 SERPINB7 chr18:61465838 3'AG 61465838 Downstream 96bp
chr18 61465933 61465933 1 + G T UCEC 61465931 + 61465911 61465951 41 CTTCAAAGGCAAGTGGCAATCAGCCTTCACCAAGAGCGAAA CTTCAAAGGCAAGTGGCAATCATCCTTCACCAAGAGCGAAA < 41bp 0.754821189510414 0.407199443484519 0.29803342 0.10840815 prediction 0.509642379020827 Functional Loss - SERPINB7 ENSG00000166396 CDS Human protein_coding chr18:61465931 chr18:61465933 nonsynonymous SNV 0.668 2 23 hm5C_associated_SNPs_63776 0 0 0 0 2 SERPINB7 chr18:61465980 5'GT 61465980 Upstream 48bp
chr2 71741017 71741017 1 + G T UCEC 71741014 + 71740994 71741034 41 AAAGCGAAGTGCGCCTACATCTAGAAAGCTGCTGTCAGACA AAAGCGAAGTGCGCCTACATCTATAAAGCTGCTGTCAGACA < 41bp 0.754815380237594 0.430821767096163 0.22915944 0.4558968 prediction 0.509630760475188 Functional Loss - DYSF ENSG00000135636 CDS Human protein_coding chr2:71741014 chr2:71741017 nonsynonymous SNV 0.918 2 24 hm5C_associated_SNPs_63777 0 0 0 0 1 DYSF chr2:71741051 5'GT 71741051 Upstream 35bp
chr11 113815415 113815415 1 + G C LUAD 113815414 + 113815394 113815434 41 AGCAGCCCTTCTTGTGCCTTCGAGGGGACACCGATGCTGAC AGCAGCCCTTCTTGTGCCTTCCAGGGGACACCGATGCTGAC < 41bp 0.865656480827023 0.610846250252108 0.9309819 0.9129113 prediction 0.509620461149829 Functional Loss - HTR3B ENSG00000149305 CDS Human protein_coding chr11:113815414 chr11:113815415 nonsynonymous SNV 0.062 0 22 hm5C_associated_SNPs_63779 0 0 0 0 1 HTR3B chr11:113815477 5'GT 113815477 Upstream 63bp
chr1 200017899 200017899 1 + T C SKCM 200017898 + 200017878 200017918 41 ATGGCAGATCAAACTCTCTTCTCCATTGTCGAGTGGGCCAG ATGGCAGATCAAACTCTCTTCCCCATTGTCGAGTGGGCCAG < 41bp 0.754808317604771 0.487592939877686 0.95140594 0.05412358 prediction 0.509616635209543 Functional Loss - NR5A2 ENSG00000116833 CDS Human protein_coding chr1:200017898 chr1:200017899 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_63780 0 0 1 0 1 NR5A2 chr1:200017946 5'GT 200017946 Upstream 48bp
chr7 5959545 5959545 1 + G T COAD 5959543 + 5959523 5959563 41 CATCGTTGGGCCCCAGCTCACAGTGCTGGCCTCTGACATCT CATCGTTGGGCCCCAGCTCACATTGCTGGCCTCTGACATCT < 41bp 0.754806739218222 0.41276807742268 0.5555525 0.18415883 prediction 0.509613478436443 Functional Loss - CCZ1 ENSG00000122674 CDS Human protein_coding chr7:5959543 chr7:5959545 nonsynonymous SNV 0.954 1 23 hm5C_associated_SNPs_63781 0 0 1 0 2 CCZ1 chr7:5959480 3'AG 5959480 Downstream 66bp
chr7 5959545 5959545 1 + G T COAD 5959543 + 5959523 5959563 41 CATCGTTGGGCCCCAGCTCACAGTGCTGGCCTCTGACATCT CATCGTTGGGCCCCAGCTCACATTGCTGGCCTCTGACATCT < 41bp 0.754806739218222 0.41276807742268 0.5555525 0.18415883 prediction 0.509613478436443 Functional Loss - CCZ1 ENSG00000122674 CDS Human protein_coding chr7:5959543 chr7:5959545 nonsynonymous SNV 0.954 1 23 hm5C_associated_SNPs_63781 0 0 1 0 2 CCZ1 chr7:5959597 5'GT 5959597 Upstream 53bp
chr7 94163033 94163033 1 + C T BLCA 94163031 + 94163011 94163051 41 TGGTAGCAGTGAAGCGCTTTCTCAATATAAAATGAACATCA TGGTAGCAGTGAAGCGCTTTCTTAATATAAAATGAACATCA < 41bp 0.754802596940086 0.471139644829408 0.20016772 0.09557009 prediction 0.509605193880172 Functional Loss - CASD1 ENSG00000127995 CDS Human protein_coding chr7:94163031 chr7:94163033 stopgain 0.736 1 23 hm5C_associated_SNPs_63782 0 0 0 0 2 CASD1 chr7:94162991 3'AG 94162991 Downstream 43bp
chr7 94163033 94163033 1 + C T BLCA 94163031 + 94163011 94163051 41 TGGTAGCAGTGAAGCGCTTTCTCAATATAAAATGAACATCA TGGTAGCAGTGAAGCGCTTTCTTAATATAAAATGAACATCA < 41bp 0.754802596940086 0.471139644829408 0.20016772 0.09557009 prediction 0.509605193880172 Functional Loss - CASD1 ENSG00000127995 CDS Human protein_coding chr7:94163031 chr7:94163033 stopgain 0.736 1 23 hm5C_associated_SNPs_63782 0 0 0 0 2 CASD1 chr7:94163114 5'GT 94163114 Upstream 82bp
chr19 19153573 19153573 1 + C T HNSC 19153571 + 19153551 19153591 41 TCAACACAGGCGAAGATGGTCTCCAAGCGCATTGCCCAGGA TCAACACAGGCGAAGATGGTCTTCAAGCGCATTGCCCAGGA < 41bp 0.816260404272491 0.561458136271398 0.96423995 0.90466833 prediction 0.509604536002187 Functional Loss - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19153571 chr19:19153573 nonsynonymous SNV 0.279 1 23 hm5C_associated_SNPs_63783 0 0 1 0 1 ARMC6 chr19:19153520 3'AG 19153520 Downstream 54bp
chr10 129875960 129875960 1 + C T UCEC 129875958 + 129875938 129875978 41 TGGCCTGAGATCGGGATTCCCGCCGAGGGCAAAGGCATGAT TGGCCTGAGATCGGGATTCCCGTCGAGGGCAAAGGCATGAT < 41bp 0.802937599597003 0.548137911183466 0.3130665 0.35619992 prediction 0.509599376827073 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129875958 chr10:129875960 nonsynonymous SNV 0.301 1 23 hm5C_associated_SNPs_63784 0 0 0 0 2 PTPRE chr10:129875881 3'AG 129875881 Downstream 80bp
chr10 129875960 129875960 1 + C T UCEC 129875958 + 129875938 129875978 41 TGGCCTGAGATCGGGATTCCCGCCGAGGGCAAAGGCATGAT TGGCCTGAGATCGGGATTCCCGTCGAGGGCAAAGGCATGAT < 41bp 0.802937599597003 0.548137911183466 0.3130665 0.35619992 prediction 0.509599376827073 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129875958 chr10:129875960 nonsynonymous SNV 0.301 1 23 hm5C_associated_SNPs_63784 0 0 0 0 2 PTPRE chr10:129876047 5'GT 129876047 Upstream 88bp
chr2 74685760 74685760 1 + G C CESC 74685759 + 74685739 74685779 41 GCCAGCAGCGGGAACGGCAGCGAGGAGGCCTGGGGGGCACT GCCAGCAGCGGGAACGGCAGCCAGGAGGCCTGGGGGGCACT < 41bp 0.754787665329314 0.439812690674403 0.91769075 0.9183172 prediction 0.509575330658628 Functional Loss - WBP1 ENSG00000239779 CDS Human protein_coding chr2:74685759 chr2:74685760 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_63787 0 0 1 0 1 WBP1 chr2:74685798 5'GT 74685798 Upstream 39bp
chr1 156314471 156314471 1 + G T PAAD 156314469 + 156314449 156314489 41 GTTCCCCACCAGCCACTTTTCTGAACATCCAGACAACAAAG GTTCCCCACCAGCCACTTTTCTTAACATCCAGACAACAAAG < 41bp 0.883786843530732 0.629005807135274 0.21098918 0.105270684 prediction 0.509562072790916 Functional Loss - TSACC ENSG00000163467 CDS Human protein_coding chr1:156314469 chr1:156314471 synonymous SNV . 0 23 hm5C_associated_SNPs_63789 0 0 0 0 1 TSACC chr1:156314499 5'GT 156314499 Upstream 29bp
chr1 11766403 11766403 1 + C T HNSC 11766401 + 11766381 11766421 41 GAGCCTGGCAGGCGCCCTTGCACCTGGGACCCCTGCCCGGA GAGCCTGGCAGGCGCCCTTGCATCTGGGACCCCTGCCCGGA < 41bp 0.754777850065446 0.494861958809496 0.32735443 0.26306695 prediction 0.509555700130891 Functional Loss - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11766401 chr1:11766403 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_63792 0 0 0 0 1 DRAXIN chr1:11766306 3'AG 11766306 Downstream 98bp
chr3 183776319 183776319 1 + A C ESCA 183776315 + 183776295 183776335 41 GAGTGGGAGCTCTTGGGCATCAACAAGGCCACCCCAAAGAT GAGTGGGAGCTCTTGGGCATCAACCAGGCCACCCCAAAGAT < 41bp 0.754769636474769 0.329692694438633 0.29304725 0.12638009 prediction 0.509539272949538 Functional Loss - HTR3C ENSG00000178084 CDS Human protein_coding chr3:183776315 chr3:183776319 nonsynonymous SNV 0.991 0 25 hm5C_associated_SNPs_63795 0 0 0 0 1 HTR3C chr3:183776375 5'GT 183776375 Upstream 57bp
chr6 16274664 16274664 1 + G T UCEC 16274662 + 16274642 16274682 41 TCAGGCAGGGAACGTGGTGACAGGAGAAATGGTAGAAGAGC TCAGGCAGGGAACGTGGTGACATGAGAAATGGTAGAAGAGC < 41bp 0.882335109748219 0.627582478894124 0.6961403 0.25618666 prediction 0.509505261708191 Functional Loss - GMPR ENSG00000137198 CDS Human protein_coding chr6:16274662 chr6:16274664 stopgain 0.994 1 23 hm5C_associated_SNPs_63798 0 0 1 0 2 GMPR chr6:16274646 3'AG 16274646 Downstream 19bp
chr6 16274664 16274664 1 + G T UCEC 16274662 + 16274642 16274682 41 TCAGGCAGGGAACGTGGTGACAGGAGAAATGGTAGAAGAGC TCAGGCAGGGAACGTGGTGACATGAGAAATGGTAGAAGAGC < 41bp 0.882335109748219 0.627582478894124 0.6961403 0.25618666 prediction 0.509505261708191 Functional Loss - GMPR ENSG00000137198 CDS Human protein_coding chr6:16274662 chr6:16274664 stopgain 0.994 1 23 hm5C_associated_SNPs_63798 0 0 1 0 2 GMPR chr6:16274727 5'GT 16274727 Upstream 64bp
chr11 57457860 57457860 1 + C T UCEC 57457858 + 57457838 57457878 41 TTCATCCCTGTAGCTGGCCTCACGGGATTTCACGTGGTTCT TTCATCCCTGTAGCTGGCCTCATGGGATTTCACGTGGTTCT < 41bp 0.754751185090928 0.481527879443265 0.66469073 0.7345254 prediction 0.509502370181856 Functional Loss - ZDHHC5 ENSG00000156599 CDS Human protein_coding chr11:57457858 chr11:57457860 nonsynonymous SNV 0.988 4 23 hm5C_associated_SNPs_63799 0 0 1 0 2 ZDHHC5 chr11:57457807 3'AG 57457807 Downstream 54bp
chr11 57457860 57457860 1 + C T UCEC 57457858 + 57457838 57457878 41 TTCATCCCTGTAGCTGGCCTCACGGGATTTCACGTGGTTCT TTCATCCCTGTAGCTGGCCTCATGGGATTTCACGTGGTTCT < 41bp 0.754751185090928 0.481527879443265 0.66469073 0.7345254 prediction 0.509502370181856 Functional Loss - ZDHHC5 ENSG00000156599 CDS Human protein_coding chr11:57457858 chr11:57457860 nonsynonymous SNV 0.988 4 23 hm5C_associated_SNPs_63799 0 0 1 0 2 ZDHHC5 chr11:57457909 5'GT 57457909 Upstream 50bp
chr4 3419185 3419185 1 + G C LUAD 3419184 + 3419164 3419204 41 ATGAGGACAGCGAGAAGAAGCGGAAAGGCGCGTTTTTCTCG ATGAGGACAGCGAGAAGAAGCCGAAAGGCGCGTTTTTCTCG < 41bp 0.754747752912743 0.461838859031305 0.8329219 0.32644802 prediction 0.509495505825487 Functional Loss - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3419184 chr4:3419185 nonsynonymous SNV 0.057 3 22 hm5C_associated_SNPs_63800 0 0 0 0 2 RGS12 chr4:3419115 3'AG 3419115 Downstream 71bp
chr4 3419185 3419185 1 + G C LUAD 3419184 + 3419164 3419204 41 ATGAGGACAGCGAGAAGAAGCGGAAAGGCGCGTTTTTCTCG ATGAGGACAGCGAGAAGAAGCCGAAAGGCGCGTTTTTCTCG < 41bp 0.754747752912743 0.461838859031305 0.8329219 0.32644802 prediction 0.509495505825487 Functional Loss - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3419184 chr4:3419185 nonsynonymous SNV 0.057 3 22 hm5C_associated_SNPs_63800 0 0 0 0 2 RGS12 chr4:3419268 5'GT 3419268 Upstream 84bp
chr7 5334518 5334518 1 + C T UCEC 5334516 + 5334496 5334536 41 CAATCCAGCTTCTACGGGTACACGGGGATGCTGCCCAAGCG CAATCCAGCTTCTACGGGTACATGGGGATGCTGCCCAAGCG < 41bp 0.772312208404276 0.517571867935158 0.1928249 0.3717034 prediction 0.509480680938236 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5334516 chr7:5334518 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_63801 0 0 0 1 2 SLC29A4 chr7:5334491 3'AG 5334491 Downstream 28bp
chr7 5334518 5334518 1 + C T UCEC 5334516 + 5334496 5334536 41 CAATCCAGCTTCTACGGGTACACGGGGATGCTGCCCAAGCG CAATCCAGCTTCTACGGGTACATGGGGATGCTGCCCAAGCG < 41bp 0.772312208404276 0.517571867935158 0.1928249 0.3717034 prediction 0.509480680938236 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5334516 chr7:5334518 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_63801 0 0 0 1 2 SLC29A4 chr7:5334496 3'AG 5334496 Downstream 23bp
chrX 70373348 70373348 1 + G C GBM 70373344 + 70373324 70373364 41 CAGGATCCGGCGCTAAGAAACAGGGCGAGGACTTAGCGGAT CAGGATCCGGCGCTAAGAAACAGGCCGAGGACTTAGCGGAT < 41bp 0.832374301163717 0.5776351278125 0.92738366 0.8877677 prediction 0.509478346702435 Functional Loss - NLGN3 ENSG00000196338 CDS Human protein_coding chrX:70373344 chrX:70373348 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_63803 0 0 0 0 2 NLGN3 chrX:70373327 3'AG 70373327 Downstream 22bp
chrX 70373348 70373348 1 + G C GBM 70373344 + 70373324 70373364 41 CAGGATCCGGCGCTAAGAAACAGGGCGAGGACTTAGCGGAT CAGGATCCGGCGCTAAGAAACAGGCCGAGGACTTAGCGGAT < 41bp 0.832374301163717 0.5776351278125 0.92738366 0.8877677 prediction 0.509478346702435 Functional Loss - NLGN3 ENSG00000196338 CDS Human protein_coding chrX:70373344 chrX:70373348 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_63803 0 0 0 0 2 NLGN3 chrX:70373386 5'GT 70373386 Upstream 39bp
chr2 179320828 179320828 1 + C T CESC 179320826 + 179320806 179320846 41 CATGGAGAGCATCCGAACCACACGACAGTGCTCACTGTCTG CATGGAGAGCATCCGAACCACATGACAGTGCTCACTGTCTG < 41bp 0.809218683251618 0.554481591737196 0.058478743 0.11258516 prediction 0.509474183028845 Functional Loss - DFNB59 ENSG00000204311 CDS Human protein_coding chr2:179320826 chr2:179320828 stopgain 0.939 0 23 hm5C_associated_SNPs_63804 2 0 0 0 2 DFNB59 chr2:179320737 3'AG 179320737 Downstream 92bp
chr2 179320828 179320828 1 + C T CESC 179320826 + 179320806 179320846 41 CATGGAGAGCATCCGAACCACACGACAGTGCTCACTGTCTG CATGGAGAGCATCCGAACCACATGACAGTGCTCACTGTCTG < 41bp 0.809218683251618 0.554481591737196 0.058478743 0.11258516 prediction 0.509474183028845 Functional Loss - DFNB59 ENSG00000204311 CDS Human protein_coding chr2:179320826 chr2:179320828 stopgain 0.939 0 23 hm5C_associated_SNPs_63804 2 0 0 0 2 DFNB59 chr2:179320878 5'GT 179320878 Upstream 51bp
chr16 19693604 19693604 1 + G T STAD 19693601 + 19693581 19693621 41 GAGAGCTTCTCAACGTGATCCAGGACTACACCTGGGAGGAC GAGAGCTTCTCAACGTGATCCAGTACTACACCTGGGAGGAC < 41bp 0.754716333326485 0.371358824302211 0.7737127 0.3394282 prediction 0.509432666652971 Functional Loss - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19693601 chr16:19693604 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_63807 0 0 1 0 1 C16orf62 chr16:19693547 3'AG 19693547 Downstream 58bp
chr3 10091106 10091106 1 + G T ESCA 10091104 + 10091084 10091124 41 TATCTGCAGTGGGAATGAAGCTGAAGTTGATACTGCCTTAG TATCTGCAGTGGGAATGAAGCTTAAGTTGATACTGCCTTAG < 41bp 0.75471459776801 0.428876921663392 0.15856656 0.031837374 prediction 0.50942919553602 Functional Loss - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10091104 chr3:10091106 stopgain 0.991 1 23 hm5C_associated_SNPs_63808 0 0 1 0 1 FANCD2 chr3:10091189 5'GT 10091189 Upstream 84bp
chr19 46173962 46173962 1 + G T OV 46173959 + 46173939 46173979 41 AACGGTACCGCAGGGAGTGCCAGGAGACCTTGGCAGCCGCG AACGGTACCGCAGGGAGTGCCAGTAGACCTTGGCAGCCGCG < 41bp 0.918694757412633 0.663982801728592 0.9017732 0.37917924 prediction 0.509423911368082 Functional Loss - GIPR ENSG00000010310 CDS Human protein_coding chr19:46173959 chr19:46173962 stopgain 0.762 0 24 hm5C_associated_SNPs_63809 0 0 1 0 2 GIPR chr19:46173893 3'AG 46173893 Downstream 70bp
chr19 46173962 46173962 1 + G T OV 46173959 + 46173939 46173979 41 AACGGTACCGCAGGGAGTGCCAGGAGACCTTGGCAGCCGCG AACGGTACCGCAGGGAGTGCCAGTAGACCTTGGCAGCCGCG < 41bp 0.918694757412633 0.663982801728592 0.9017732 0.37917924 prediction 0.509423911368082 Functional Loss - GIPR ENSG00000010310 CDS Human protein_coding chr19:46173959 chr19:46173962 stopgain 0.762 0 24 hm5C_associated_SNPs_63809 0 0 1 0 2 GIPR chr19:46173992 5'GT 46173992 Upstream 31bp
chr16 67409305 67409305 1 + G T UCEC 67409302 + 67409282 67409322 41 TCCGGCTCCCTCCTCCTCAACAAGAAGTTTCTCGGTGAGTG TCCGGCTCCCTCCTCCTCAACAATAAGTTTCTCGGTGAGTG < 41bp 0.754711793875902 0.365716204639782 0.40100637 0.16558698 prediction 0.509423587751803 Functional Loss - LRRC36 ENSG00000159708 CDS Human protein_coding chr16:67409302 chr16:67409305 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_63810 0 0 0 0 2 LRRC36 chr16:67409218 3'AG 67409218 Downstream 88bp
chr16 67409305 67409305 1 + G T UCEC 67409302 + 67409282 67409322 41 TCCGGCTCCCTCCTCCTCAACAAGAAGTTTCTCGGTGAGTG TCCGGCTCCCTCCTCCTCAACAATAAGTTTCTCGGTGAGTG < 41bp 0.754711793875902 0.365716204639782 0.40100637 0.16558698 prediction 0.509423587751803 Functional Loss - LRRC36 ENSG00000159708 CDS Human protein_coding chr16:67409302 chr16:67409305 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_63810 0 0 0 0 2 LRRC36 chr16:67409315 5'GT 67409315 Upstream 11bp
chr6 31675858 31675858 1 + G T LUAD 31675855 + 31675835 31675875 41 TGAGCCCAGGAGCCGAAGACCAAGAATCATCCGCTGCCTCA TGAGCCCAGGAGCCGAAGACCAATAATCATCCGCTGCCTCA < 41bp 0.754708964456144 0.380932935700858 0.6171657 0.48578033 prediction 0.509417928912288 Functional Loss - LY6G6F ENSG00000204424;ENSG00000250641 CDS Human other chr6:31675855 chr6:31675858 nonsynonymous SNV 0.725 3 24 hm5C_associated_SNPs_63811 0 0 0 0 1 LY6G6F chr6:31675911 5'GT 31675911 Upstream 54bp
chr18 72178077 72178077 1 + C T UCEC 72178075 + 72178055 72178095 41 CTGTCAACGTCCGATTCTGCCTCGAAGGCATGGAGGAGTCA CTGTCAACGTCCGATTCTGCCTTGAAGGCATGGAGGAGTCA < 41bp 0.754703266005169 0.454991065749773 0.86414874 0.083560854 prediction 0.509406532010339 Functional Loss - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72178075 chr18:72178077 synonymous SNV . 0 23 hm5C_associated_SNPs_63812 0 0 1 0 1 CNDP2 chr18:72178048 3'AG 72178048 Downstream 30bp
chr12 123339495 123339495 1 + C T STAD 123339493 + 123339473 123339513 41 AAGGCCACAGGGACCGGTTCCACGAGCAGTTTCACAGGTAC AAGGCCACAGGGACCGGTTCCATGAGCAGTTTCACAGGTAC < 41bp 0.754701550320879 0.481343284667452 0.34339732 0.3182459 prediction 0.509403100641757 Functional Loss - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123339493 chr12:123339495 synonymous SNV . 0 23 hm5C_associated_SNPs_63813 0 0 0 0 2 HIP1R chr12:123339452 3'AG 123339452 Downstream 44bp
chr12 123339495 123339495 1 + C T STAD 123339493 + 123339473 123339513 41 AAGGCCACAGGGACCGGTTCCACGAGCAGTTTCACAGGTAC AAGGCCACAGGGACCGGTTCCATGAGCAGTTTCACAGGTAC < 41bp 0.754701550320879 0.481343284667452 0.34339732 0.3182459 prediction 0.509403100641757 Functional Loss - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123339493 chr12:123339495 synonymous SNV . 0 23 hm5C_associated_SNPs_63813 0 0 0 0 2 HIP1R chr12:123339509 5'GT 123339509 Upstream 15bp
chr19 49619582 49619582 1 + C T LUAD 49619580 + 49619560 49619600 41 ATCCCAGGGTAGTGGAGCTACCCAAGACGGATGAGGGCCTA ATCCCAGGGTAGTGGAGCTACCTAAGACGGATGAGGGCCTA < 41bp 0.801235135965883 0.54653519898512 0.3439424 0.3218261 prediction 0.509399873961524 Functional Loss - LIN7B ENSG00000104863 CDS Human protein_coding chr19:49619580 chr19:49619582 synonymous SNV . 0 23 hm5C_associated_SNPs_63814 0 0 0 0 1 LIN7B chr19:49619520 3'AG 49619520 Downstream 63bp
chr7 140380909 140380909 1 + G C HNSC 140380908 + 140380888 140380928 41 ACTTGAAAAGGAAGATTGCACGGCTGGGGATCAACATGCTC ACTTGAAAAGGAAGATTGCACCGCTGGGGATCAACATGCTC < 41bp 0.754696271275037 0.440515661270816 0.08803439 0.022794902 prediction 0.509392542550073 Functional Loss - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140380908 chr7:140380909 nonsynonymous SNV 0.352 0 22 hm5C_associated_SNPs_63815 0 0 1 0 2 ADCK2 chr7:140380842 3'AG 140380842 Downstream 68bp
chr7 140380909 140380909 1 + G C HNSC 140380908 + 140380888 140380928 41 ACTTGAAAAGGAAGATTGCACGGCTGGGGATCAACATGCTC ACTTGAAAAGGAAGATTGCACCGCTGGGGATCAACATGCTC < 41bp 0.754696271275037 0.440515661270816 0.08803439 0.022794902 prediction 0.509392542550073 Functional Loss - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140380908 chr7:140380909 nonsynonymous SNV 0.352 0 22 hm5C_associated_SNPs_63815 0 0 1 0 2 ADCK2 chr7:140380937 5'GT 140380937 Upstream 29bp
chr20 56728619 56728619 1 + G T ESCA 56728617 + 56728597 56728637 41 CAGGAAATACCGTCTGAAGGCTGAATCGGAAGCACGGCAGA CAGGAAATACCGTCTGAAGGCTTAATCGGAAGCACGGCAGA < 41bp 0.75469572971212 0.418518648969044 0.24439225 0.14411044 prediction 0.50939145942424 Functional Loss - C20orf85 ENSG00000124237 CDS Human protein_coding chr20:56728617 chr20:56728619 stopgain 0.904 1 23 hm5C_associated_SNPs_63816 0 0 0 0 2 C20orf85 chr20:56728600 3'AG 56728600 Downstream 20bp
chr20 56728619 56728619 1 + G T ESCA 56728617 + 56728597 56728637 41 CAGGAAATACCGTCTGAAGGCTGAATCGGAAGCACGGCAGA CAGGAAATACCGTCTGAAGGCTTAATCGGAAGCACGGCAGA < 41bp 0.75469572971212 0.418518648969044 0.24439225 0.14411044 prediction 0.50939145942424 Functional Loss - C20orf85 ENSG00000124237 CDS Human protein_coding chr20:56728617 chr20:56728619 stopgain 0.904 1 23 hm5C_associated_SNPs_63816 0 0 0 0 2 C20orf85 chr20:56728681 5'GT 56728681 Upstream 63bp
chr19 36135231 36135231 1 + G T SARC 36135229 + 36135209 36135249 41 CTGGCAACAGCCGCGAGTTCCAGCTGTGCGACCCCAAAGAG CTGGCAACAGCCGCGAGTTCCATCTGTGCGACCCCAAAGAG < 41bp 0.754692321002115 0.4053828475237 0.8065875 0.34978396 prediction 0.509384642004229 Functional Loss - ETV2 ENSG00000105672 CDS Human protein_coding chr19:36135229 chr19:36135231 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_63817 0 0 0 0 2 ETV2 chr19:36135137 3'AG 36135137 Downstream 95bp
chr19 36135231 36135231 1 + G T SARC 36135229 + 36135209 36135249 41 CTGGCAACAGCCGCGAGTTCCAGCTGTGCGACCCCAAAGAG CTGGCAACAGCCGCGAGTTCCATCTGTGCGACCCCAAAGAG < 41bp 0.754692321002115 0.4053828475237 0.8065875 0.34978396 prediction 0.509384642004229 Functional Loss - ETV2 ENSG00000105672 CDS Human protein_coding chr19:36135229 chr19:36135231 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_63817 0 0 0 0 2 ETV2 chr19:36135249 5'GT 36135249 Upstream 19bp
chr22 45579340 45579340 1 + G T OV 45579338 + 45579318 45579358 41 AAGAGAAAGGCATAGGTACTCTGCATTTAAAACCTACAGCA AAGAGAAAGGCATAGGTACTCTTCATTTAAAACCTACAGCA < 41bp 0.860106884085549 0.605420993461154 0.17505148 0.20569971 prediction 0.50937178124879 Functional Loss - NUP50 ENSG00000093000 CDS Human protein_coding chr22:45579338 chr22:45579340 synonymous SNV . 0 23 hm5C_associated_SNPs_63818 0 0 0 0 2 NUP50 chr22:45579283 3'AG 45579283 Downstream 58bp
chr22 45579340 45579340 1 + G T OV 45579338 + 45579318 45579358 41 AAGAGAAAGGCATAGGTACTCTGCATTTAAAACCTACAGCA AAGAGAAAGGCATAGGTACTCTTCATTTAAAACCTACAGCA < 41bp 0.860106884085549 0.605420993461154 0.17505148 0.20569971 prediction 0.50937178124879 Functional Loss - NUP50 ENSG00000093000 CDS Human protein_coding chr22:45579338 chr22:45579340 synonymous SNV . 0 23 hm5C_associated_SNPs_63818 0 0 0 0 2 NUP50 chr22:45579401 5'GT 45579401 Upstream 62bp
chr3 9984547 9984547 1 + T C HNSC 9984546 + 9984526 9984566 41 AACTGTGGAGCTGACCAATTCTGCGTGAACACTGAGGGCTC AACTGTGGAGCTGACCAATTCCGCGTGAACACTGAGGGCTC < 41bp 0.760246437274962 0.505566696167013 0.50379044 0.64090043 prediction 0.509359482215899 Functional Loss - CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9984546 chr3:9984547 nonsynonymous SNV 0.991 5 22 hm5C_associated_SNPs_63820 0 0 1 0 2 CRELD1 chr3:9984497 3'AG 9984497 Downstream 51bp
chr3 9984547 9984547 1 + T C HNSC 9984546 + 9984526 9984566 41 AACTGTGGAGCTGACCAATTCTGCGTGAACACTGAGGGCTC AACTGTGGAGCTGACCAATTCCGCGTGAACACTGAGGGCTC < 41bp 0.760246437274962 0.505566696167013 0.50379044 0.64090043 prediction 0.509359482215899 Functional Loss - CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9984546 chr3:9984547 nonsynonymous SNV 0.991 5 22 hm5C_associated_SNPs_63820 0 0 1 0 2 CRELD1 chr3:9984580 5'GT 9984580 Upstream 34bp
chr14 77576230 77576230 1 + G T UCEC 77576228 + 77576208 77576248 41 CTGAGCGCCTTAGGCTGGAGCAGAGAAGACAGGCCGAGGCA CTGAGCGCCTTAGGCTGGAGCATAGAAGACAGGCCGAGGCA < 41bp 0.754679367144305 0.40179358954049 0.8771739 0.49016425 prediction 0.509358734288609 Functional Loss - CIPC ENSG00000198894 CDS Human protein_coding chr14:77576228 chr14:77576230 nonsynonymous SNV 0.942 0 23 hm5C_associated_SNPs_63821 0 0 1 0 2 CIPC chr14:77576155 3'AG 77576155 Downstream 76bp
chr14 77576230 77576230 1 + G T UCEC 77576228 + 77576208 77576248 41 CTGAGCGCCTTAGGCTGGAGCAGAGAAGACAGGCCGAGGCA CTGAGCGCCTTAGGCTGGAGCATAGAAGACAGGCCGAGGCA < 41bp 0.754679367144305 0.40179358954049 0.8771739 0.49016425 prediction 0.509358734288609 Functional Loss - CIPC ENSG00000198894 CDS Human protein_coding chr14:77576228 chr14:77576230 nonsynonymous SNV 0.942 0 23 hm5C_associated_SNPs_63821 0 0 1 0 2 CIPC chr14:77576324 5'GT 77576324 Upstream 95bp
chr3 52811654 52811654 1 + G T THCA 52811651 + 52811631 52811671 41 CATGGACGGTGCCATGGGGCCTCGGGGGCTGCTGTTGTGCA CATGGACGGTGCCATGGGGCCTCTGGGGCTGCTGTTGTGCA < 41bp 0.754677079795624 0.37122230339147 0.41870236 0.29853678 prediction 0.509354159591248 Functional Loss - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52811651 chr3:52811654 nonsynonymous SNV 0.063 0 24 hm5C_associated_SNPs_63823 0 0 0 0 1 ITIH1 chr3:52811748 5'GT 52811748 Upstream 95bp
chr2 27157542 27157542 1 + C T rs151073506 27157540 + 27157520 27157560 41 TCCCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACT TCCCACGCGGCTGCCTATGTCATGGTGCCTCCCCTGAGACT < 41bp 0.79643621999513 0.541768444316425 0.87622714 0.8570673 prediction 0.50933555135741 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157540 chr2:27157542 nonsynonymous SNV 0.975 3 23 hm5C_associated_SNPs_63826 0 0 0 0 2 DPYSL5 chr2:27157446 3'AG 27157446 Downstream 97bp
chr2 27157542 27157542 1 + C T rs151073506 27157540 + 27157520 27157560 41 TCCCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACT TCCCACGCGGCTGCCTATGTCATGGTGCCTCCCCTGAGACT < 41bp 0.79643621999513 0.541768444316425 0.87622714 0.8570673 prediction 0.50933555135741 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157540 chr2:27157542 nonsynonymous SNV 0.975 3 23 hm5C_associated_SNPs_63826 0 0 0 0 2 DPYSL5 chr2:27157602 5'GT 27157602 Upstream 61bp
chr9 96289498 96289498 1 + C T COAD 96289496 + 96289476 96289516 41 AAGCCACTCAGAGCCTCAGGCACGAGGAGACCCAGGAGACC AAGCCACTCAGAGCCTCAGGCATGAGGAGACCCAGGAGACC < 41bp 0.81350725945936 0.558842630341753 0.5622616 0.82090247 prediction 0.509329258235215 Functional Loss - FAM120A ENSG00000048828 CDS Human protein_coding chr9:96289496 chr9:96289498 stopgain 1.000 0 23 hm5C_associated_SNPs_63827 0 0 1 0 2 FAM120A chr9:96289437 3'AG 96289437 Downstream 62bp
chr9 96289498 96289498 1 + C T COAD 96289496 + 96289476 96289516 41 AAGCCACTCAGAGCCTCAGGCACGAGGAGACCCAGGAGACC AAGCCACTCAGAGCCTCAGGCATGAGGAGACCCAGGAGACC < 41bp 0.81350725945936 0.558842630341753 0.5622616 0.82090247 prediction 0.509329258235215 Functional Loss - FAM120A ENSG00000048828 CDS Human protein_coding chr9:96289496 chr9:96289498 stopgain 1.000 0 23 hm5C_associated_SNPs_63827 0 0 1 0 2 FAM120A chr9:96289524 5'GT 96289524 Upstream 27bp
chr9 128103496 128103496 1 + G T UCEC 128103494 + 128103474 128103514 41 AGCGATGATGAGAAATCAGACAGGAACAGACCTTGGTGGAG AGCGATGATGAGAAATCAGACATGAACAGACCTTGGTGGAG < 41bp 0.754660327620051 0.432022131638747 0.38482243 0.07601765 prediction 0.509320655240102 Functional Loss - GAPVD1 ENSG00000165219 CDS Human protein_coding chr9:128103494 chr9:128103496 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_63828 0 0 1 0 2 GAPVD1 chr9:128103456 3'AG 128103456 Downstream 41bp
chr9 128103496 128103496 1 + G T UCEC 128103494 + 128103474 128103514 41 AGCGATGATGAGAAATCAGACAGGAACAGACCTTGGTGGAG AGCGATGATGAGAAATCAGACATGAACAGACCTTGGTGGAG < 41bp 0.754660327620051 0.432022131638747 0.38482243 0.07601765 prediction 0.509320655240102 Functional Loss - GAPVD1 ENSG00000165219 CDS Human protein_coding chr9:128103494 chr9:128103496 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_63828 0 0 1 0 2 GAPVD1 chr9:128103543 5'GT 128103543 Upstream 48bp
chr15 64687693 64687693 1 + C T UCEC 64687691 + 64687671 64687711 41 CCTGCATTTACTGAACCTGACACGACTGCAGAGGTTAAAAC CCTGCATTTACTGAACCTGACATGACTGCAGAGGTTAAAAC < 41bp 0.803187176853527 0.548528239759249 0.10273495 0.24174687 prediction 0.509317874188555 Functional Loss - TRIP4 ENSG00000103671 CDS Human protein_coding chr15:64687691 chr15:64687693 nonsynonymous SNV 0.162 0 23 hm5C_associated_SNPs_63829 0 0 1 0 2 TRIP4 chr15:64687597 3'AG 64687597 Downstream 97bp
chr15 64687693 64687693 1 + C T UCEC 64687691 + 64687671 64687711 41 CCTGCATTTACTGAACCTGACACGACTGCAGAGGTTAAAAC CCTGCATTTACTGAACCTGACATGACTGCAGAGGTTAAAAC < 41bp 0.803187176853527 0.548528239759249 0.10273495 0.24174687 prediction 0.509317874188555 Functional Loss - TRIP4 ENSG00000103671 CDS Human protein_coding chr15:64687691 chr15:64687693 nonsynonymous SNV 0.162 0 23 hm5C_associated_SNPs_63829 0 0 1 0 2 TRIP4 chr15:64687730 5'GT 64687730 Upstream 38bp
chr12 123889576 123889576 1 + C T UCEC 123889574 + 123889554 123889594 41 CTGTACGCACAGGACCCTTCCACGGGCTGCTACATGTACTA CTGTACGCACAGGACCCTTCCATGGGCTGCTACATGTACTA < 41bp 0.80512691340033 0.550469121335413 0.6975206 0.8153125 prediction 0.509315584129835 Functional Loss - KMT5A ENSG00000183955 CDS Human protein_coding chr12:123889574 chr12:123889576 nonsynonymous SNV 0.880 3 23 hm5C_associated_SNPs_63830 0 0 1 0 1 KMT5A chr12:123889621 5'GT 123889621 Upstream 46bp
chr4 160253698 160253698 1 + T C LIHC 160253697 + 160253677 160253717 41 ATTAAAAAGGCCAGTCGCTACTCCATTCCAGATCTTGCTGT ATTAAAAAGGCCAGTCGCTACCCCATTCCAGATCTTGCTGT < 41bp 0.754655965157988 0.48848887740204 0.96099675 0.31624228 prediction 0.509311930315976 Functional Loss - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160253697 chr4:160253698 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_63831 0 0 1 0 1 RAPGEF2 chr4:160253603 3'AG 160253603 Downstream 96bp
chr1 148932825 148932825 1 + A T LUSC 148932821 + 148932801 148932841 41 CCCAAGCTAGCCCGCCAGGCCTCCATAGAGCTGCCCAGCAT CCCAAGCTAGCCCGCCAGGCCTCCTTAGAGCTGCCCAGCAT < 41bp 0.873169819173872 0.61852168784611 0.9577625 0.046655357 prediction 0.509296262655523 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932821 chr1:148932825 . . 0 25 hm5C_associated_SNPs_63835 0 0 1 2 2 LOC645166 chr1:148932786 3'AG 148932786 Downstream 40bp
chr1 148932825 148932825 1 + A T LUSC 148932821 + 148932801 148932841 41 CCCAAGCTAGCCCGCCAGGCCTCCATAGAGCTGCCCAGCAT CCCAAGCTAGCCCGCCAGGCCTCCTTAGAGCTGCCCAGCAT < 41bp 0.873169819173872 0.61852168784611 0.9577625 0.046655357 prediction 0.509296262655523 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932821 chr1:148932825 . . 0 25 hm5C_associated_SNPs_63835 0 0 1 2 2 LOC645166 chr1:148932920 5'GT 148932920 Upstream 96bp
chr22 39427726 39427726 1 + G T LUSC 39427724 + 39427704 39427744 41 TCCTGAGACCCATTGTCATGCAGAAAGGTGCTTCCTCTCTT TCCTGAGACCCATTGTCATGCATAAAGGTGCTTCCTCTCTT < 41bp 0.754633259973118 0.407852013669013 0.25602862 0.18103331 prediction 0.509266519946237 Functional Loss - APOBEC3D ENSG00000243811 CDS Human protein_coding chr22:39427724 chr22:39427726 stopgain 0.020 0 23 hm5C_associated_SNPs_63837 0 0 0 0 1 APOBEC3D chr22:39427699 3'AG 39427699 Downstream 28bp
chr19 53848798 53848798 1 + C T CESC 53848796 + 53848776 53848816 41 GGATGTGGCCATAGAATTCTCTCAGGAAGAGTGGAAGTGCC GGATGTGGCCATAGAATTCTCTTAGGAAGAGTGGAAGTGCC < 41bp 0.754626132244709 0.488214230260672 0.05547473 0.124335945 prediction 0.509252264489417 Functional Loss - ZNF845 ENSG00000213799 CDS Human protein_coding chr19:53848796 chr19:53848798 stopgain 0.132 0 23 hm5C_associated_SNPs_63838 0 0 0 0 1 ZNF845 chr19:53848885 5'GT 53848885 Upstream 88bp
chr14 53237817 53237817 1 + A C UCEC 53237813 + 53237793 53237833 41 CCATGCAAGTGGCGACTGCACAGAATGGCTGACTTGAAGAG CCATGCAAGTGGCGACTGCACAGACTGGCTGACTTGAAGAG < 41bp 0.754622338721011 0.362219391864815 0.107316226 0.06394735 prediction 0.509244677442022 Functional Loss - STYX ENSG00000198252 CDS Human protein_coding chr14:53237813 chr14:53237817 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_63839 0 0 1 0 1 STYX chr14:53237751 3'AG 53237751 Downstream 67bp
chr12 3702273 3702273 1 + C T rs138690469 3702271 + 3702251 3702291 41 TCTCTGCCTTGCAGCGAGACCTCGATTTCACAGTAGACTTG TCTCTGCCTTGCAGCGAGACCTTGATTTCACAGTAGACTTG < 41bp 0.806362829297747 0.551740864256294 0.31786954 0.025477856 prediction 0.509243930082906 Functional Loss - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3702271 chr12:3702273 synonymous SNV . 0 23 hm5C_associated_SNPs_63840 0 0 0 0 1 PRMT8 chr12:3702265 3'AG 3702265 Downstream 9bp
chr16 69988301 69988301 1 + C T SKCM 69988299 + 69988279 69988319 41 GCCCTCTGTGGAACCCCAACCCCGAGCCTGGCGTCCGGCCT GCCCTCTGTGGAACCCCAACCCTGAGCCTGGCGTCCGGCCT < 41bp 0.772994236203172 0.518373921211202 0.7373115 0.3407844 prediction 0.50924062998394 Functional Loss - CLEC18A ENSG00000157322 CDS Human protein_coding chr16:69988299 chr16:69988301 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_63841 0 0 0 0 1 CLEC18A chr16:69988237 3'AG 69988237 Downstream 65bp
chr1 180217490 180217490 1 + C T UCEC 180217488 + 180217468 180217508 41 TCCTGAAGGTCCTGGACAGACACTGGCACAGCTCCTGCCTC TCCTGAAGGTCCTGGACAGACATTGGCACAGCTCCTGCCTC < 41bp 0.754601789248833 0.491852872107209 0.09168348 0.2292827 prediction 0.509203578497665 Functional Loss - LHX4 ENSG00000121454 CDS Human protein_coding chr1:180217488 chr1:180217490 synonymous SNV . 0 23 hm5C_associated_SNPs_63845 0 0 0 0 1 LHX4 chr1:180217420 3'AG 180217420 Downstream 71bp
chr20 31755968 31755968 1 + A C rs7262444 31755964 + 31755944 31755984 41 GCCACCATTCAGCAGAATCCCAGCAGACTGTGCAGTGGGGC GCCACCATTCAGCAGAATCCCAGCCGACTGTGCAGTGGGGC < 41bp 0.75458399217621 0.407986271365012 0.1505796 0.12062594 prediction 0.509167984352419 Functional Loss - BPIFA2 ENSG00000131050 UTR5 Human protein_coding chr20:31755964 chr20:31755968 . . 0 25 hm5C_associated_SNPs_63850 0 0 0 0 1 BPIFA2 chr20:31756015 5'GT 31756015 Upstream 48bp
chr6 405040 405040 1 + C T CESC 405038 + 405018 405058 41 AGCTGCAAGCGTTTGCTCACCACGGCCGCTCCCTGCCAAGA AGCTGCAAGCGTTTGCTCACCATGGCCGCTCCCTGCCAAGA < 41bp 0.765506236439078 0.510922470844279 0.8674977 0.7585154 prediction 0.509167531189597 Functional Loss - IRF4 ENSG00000137265 CDS Human protein_coding chr6:405038 chr6:405040 synonymous SNV . 0 23 hm5C_associated_SNPs_63851 0 0 0 0 2 IRF4 chr6:405018 3'AG 405018 Downstream 23bp
chr6 405040 405040 1 + C T CESC 405038 + 405018 405058 41 AGCTGCAAGCGTTTGCTCACCACGGCCGCTCCCTGCCAAGA AGCTGCAAGCGTTTGCTCACCATGGCCGCTCCCTGCCAAGA < 41bp 0.765506236439078 0.510922470844279 0.8674977 0.7585154 prediction 0.509167531189597 Functional Loss - IRF4 ENSG00000137265 CDS Human protein_coding chr6:405038 chr6:405040 synonymous SNV . 0 23 hm5C_associated_SNPs_63851 0 0 0 0 2 IRF4 chr6:405130 5'GT 405130 Upstream 91bp
chr14 39646650 39646650 1 + C T CESC 39646648 + 39646628 39646668 41 GCGTCGGACCAGAAGAGAATCACGCCAGGAAAGCGACCCGG GCGTCGGACCAGAAGAGAATCATGCCAGGAAAGCGACCCGG < 41bp 0.783281711641193 0.528702166718638 0.25266355 0.42419717 prediction 0.50915908984511 Functional Loss - PNN ENSG00000100941 CDS Human protein_coding chr14:39646648 chr14:39646650 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_63853 0 0 1 0 2 PNN chr14:39646616 3'AG 39646616 Downstream 35bp
chr14 39646650 39646650 1 + C T CESC 39646648 + 39646628 39646668 41 GCGTCGGACCAGAAGAGAATCACGCCAGGAAAGCGACCCGG GCGTCGGACCAGAAGAGAATCATGCCAGGAAAGCGACCCGG < 41bp 0.783281711641193 0.528702166718638 0.25266355 0.42419717 prediction 0.50915908984511 Functional Loss - PNN ENSG00000100941 CDS Human protein_coding chr14:39646648 chr14:39646650 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_63853 0 0 1 0 2 PNN chr14:39646688 5'GT 39646688 Upstream 39bp
chr1 6692883 6692883 1 + G T UCEC 6692881 + 6692861 6692901 41 GCCACGGAGGCCGCAAGCAACAGAGGCTGTTGGCCGGCCGA GCCACGGAGGCCGCAAGCAACATAGGCTGTTGGCCGGCCGA < 41bp 0.754577032356423 0.399184301531664 0.9060857 0.49616915 prediction 0.509154064712845 Functional Loss - THAP3 ENSG00000041988 CDS Human protein_coding chr1:6692881 chr1:6692883 stopgain 0.004 0 23 hm5C_associated_SNPs_63854 0 0 0 0 1 THAP3 chr1:6692856 3'AG 6692856 Downstream 28bp
chr6 116951637 116951637 1 + C T COAD 116951635 + 116951615 116951655 41 CCCTGGACAACACGGTTATCCTCAAATCTCATTCCACAATA CCCTGGACAACACGGTTATCCTTAAATCTCATTCCACAATA < 41bp 0.754552087972759 0.465165548671328 0.38445637 0.05967629 prediction 0.509104175945518 Functional Loss - RSPH4A ENSG00000111834 CDS Human protein_coding chr6:116951635 chr6:116951637 stopgain 0.521 4 23 hm5C_associated_SNPs_63855 0 0 0 0 2 RSPH4A chr6:116951598 3'AG 116951598 Downstream 40bp
chr6 116951637 116951637 1 + C T COAD 116951635 + 116951615 116951655 41 CCCTGGACAACACGGTTATCCTCAAATCTCATTCCACAATA CCCTGGACAACACGGTTATCCTTAAATCTCATTCCACAATA < 41bp 0.754552087972759 0.465165548671328 0.38445637 0.05967629 prediction 0.509104175945518 Functional Loss - RSPH4A ENSG00000111834 CDS Human protein_coding chr6:116951635 chr6:116951637 stopgain 0.521 4 23 hm5C_associated_SNPs_63855 0 0 0 0 2 RSPH4A chr6:116951715 5'GT 116951715 Upstream 79bp
chr4 3424270 3424270 1 + G T UCEC 3424267 + 3424247 3424287 41 CATGGCATCAACGGGGCGGCCGCGGACCTCTTCCTGGTGGG CATGGCATCAACGGGGCGGCCGCTGACCTCTTCCTGGTGGG < 41bp 0.754550406479708 0.385878394109203 0.8520906 0.19502616 prediction 0.509100812959417 Functional Loss - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3424267 chr4:3424270 synonymous SNV . 0 24 hm5C_associated_SNPs_63857 0 0 1 0 1 RGS12 chr4:3424297 5'GT 3424297 Upstream 28bp
chr9 137982073 137982073 1 + G T LUSC 137982071 + 137982051 137982091 41 CCAACCCTGAGGAGAGCTGGCAGGTGTACAGCTCTGCCCAG CCAACCCTGAGGAGAGCTGGCATGTGTACAGCTCTGCCCAG < 41bp 0.89302456341485 0.638480270383182 0.9184908 0.4155784 prediction 0.509088586063336 Functional Loss - OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137982071 chr9:137982073 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_63860 0 0 1 0 1 OLFM1 chr9:137982041 3'AG 137982041 Downstream 33bp
chr12 52450425 52450425 1 + C T UCEC 52450423 + 52450403 52450443 41 AGCACTGCCAAACTGGACTACTCCAAGGTGAGGTCCCACCC AGCACTGCCAAACTGGACTACTTCAAGGTGAGGTCCCACCC < 41bp 0.754542190722021 0.463600893050741 0.95905393 0.77687705 prediction 0.509084381444041 Functional Loss - NR4A1 ENSG00000123358 CDS Human protein_coding chr12:52450423 chr12:52450425 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_63861 0 0 1 0 1 NR4A1 chr12:52450429 5'GT 52450429 Upstream 5bp
chr10 75676154 75676154 1 + C T HNSC 75676152 + 75676132 75676172 41 TCTTTGGCGTCACAGGGAGACTCAGGGGGACCCCTCGTCTG TCTTTGGCGTCACAGGGAGACTTAGGGGGACCCCTCGTCTG < 41bp 0.771602787659463 0.51706789748261 0.56221884 0.79153335 prediction 0.509069780353706 Functional Loss - PLAU ENSG00000122861 CDS Human protein_coding chr10:75676152 chr10:75676154 nonsynonymous SNV 0.286 5 23 hm5C_associated_SNPs_63866 0 0 0 2 1 PLAU chr10:75676147 3'AG 75676147 Downstream 8bp
chr17 80011925 80011925 1 + G T UCEC 80011923 + 80011903 80011943 41 CGCAAGCTCTCAGAGGCCACCAGGTGAGGCCAGGGGCTTGG CGCAAGCTCTCAGAGGCCACCATGTGAGGCCAGGGGCTTGG < 41bp 0.754533505188305 0.400256131055486 0.9194449 0.3314251 prediction 0.50906701037661 Functional Loss - GPS1 ENSG00000169727 CDS Human protein_coding chr17:80011923 chr17:80011925 nonsynonymous SNV 0.894 1 23 hm5C_associated_SNPs_63867 0 0 1 0 1 GPS1 chr17:80011925 5'GT 80011925 Upstream 1bp
chr16 88871286 88871286 1 + G T CESC 88871283 + 88871263 88871303 41 GAGTCCTGCACCCCAGAGGCCGAGGGCCGCCCTGAGGAGCC GAGTCCTGCACCCCAGAGGCCGATGGCCGCCCTGAGGAGCC < 41bp 0.754531744271479 0.365348310146492 0.8672185 0.27823472 prediction 0.509063488542957 Functional Loss - CDT1 ENSG00000167513 CDS Human protein_coding chr16:88871283 chr16:88871286 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_63868 0 0 1 0 1 CDT1 chr16:88871306 5'GT 88871306 Upstream 21bp
chr5 23521184 23521184 1 + G T LUAD 23521181 + 23521161 23521201 41 ATCTAGTTTGAAAGAATTGTCAAGAACAGCAAATTTACTGA ATCTAGTTTGAAAGAATTGTCAATAACAGCAAATTTACTGA < 41bp 0.7545276987423 0.366967162176868 0.22090855 0.026417196 prediction 0.509055397484599 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23521181 chr5:23521184 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_63870 0 0 0 0 1 PRDM9 chr5:23521132 3'AG 23521132 Downstream 53bp
chr2 1418251 1418251 1 + C T LGG 1418249 + 1418229 1418269 41 GAAGCCTTCTTCCCCTTCATCTCGAGAGGGAAAGAACTCCT GAAGCCTTCTTCCCCTTCATCTTGAGAGGGAAAGAACTCCT < 41bp 0.754523093947792 0.48974453441521 0.24843028 0.086729586 prediction 0.509046187895584 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1418249 chr2:1418251 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_63872 0 0 0 0 1 TPO chr2:1418274 5'GT 1418274 Upstream 24bp
chr14 78392162 78392162 1 + G T UCEC 78392160 + 78392140 78392180 41 CACCTCTGGCAGTCTCTGATCTGGACTGACATGAAGAGAGT CACCTCTGGCAGTCTCTGATCTTGACTGACATGAAGAGAGT < 41bp 0.878616864880303 0.624094619498153 0.27738547 0.09965229 prediction 0.509044490764301 Functional Loss - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78392160 chr14:78392162 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_63873 0 0 0 0 1 ADCK1 chr14:78392107 3'AG 78392107 Downstream 56bp
chr2 27121530 27121530 1 + G T STAD 27121528 + 27121508 27121548 41 GGCCAAGGTGATTGATGCCACAGGAAAACTGGTGATCCCTG GGCCAAGGTGATTGATGCCACATGAAAACTGGTGATCCCTG < 41bp 0.885608513170598 0.631094252995789 0.54880995 0.32239562 prediction 0.509028520349619 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27121528 chr2:27121530 stopgain 0.928 1 23 hm5C_associated_SNPs_63876 0 0 1 0 1 DPYSL5 chr2:27121628 5'GT 27121628 Upstream 99bp
chr1 1459272 1459272 1 + G T UCEC 1459269 + 1459249 1459289 41 GCCATAGCAACAAGGAACACCAAGAAGAACCGCAGCCTGTA GCCATAGCAACAAGGAACACCAATAAGAACCGCAGCCTGTA < 41bp 0.754512919639848 0.361537075218337 0.3403659 0.34375045 prediction 0.509025839279696 Functional Loss - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1459269 chr1:1459272 nonsynonymous SNV 0.018 1 24 hm5C_associated_SNPs_63877 0 0 1 0 2 ATAD3A chr1:1459219 3'AG 1459219 Downstream 54bp
chr1 1459272 1459272 1 + G T UCEC 1459269 + 1459249 1459289 41 GCCATAGCAACAAGGAACACCAAGAAGAACCGCAGCCTGTA GCCATAGCAACAAGGAACACCAATAAGAACCGCAGCCTGTA < 41bp 0.754512919639848 0.361537075218337 0.3403659 0.34375045 prediction 0.509025839279696 Functional Loss - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1459269 chr1:1459272 nonsynonymous SNV 0.018 1 24 hm5C_associated_SNPs_63877 0 0 1 0 2 ATAD3A chr1:1459344 5'GT 1459344 Upstream 73bp
chr8 21832234 21832234 1 + C T READ 21832232 + 21832212 21832252 41 GAAAAATAGCCTCTTCTTTTCGCGATTCATCATTATTTGAT GAAAAATAGCCTCTTCTTTTCGTGATTCATCATTATTTGAT < 41bp 0.754506803525664 0.471807729287386 0.3055512 0.30856526 prediction 0.509013607051328 Functional Loss - XPO7 ENSG00000130227 CDS Human protein_coding chr8:21832232 chr8:21832234 synonymous SNV . 0 23 hm5C_associated_SNPs_63879 0 0 1 0 2 XPO7 chr8:21832181 3'AG 21832181 Downstream 54bp
chr8 21832234 21832234 1 + C T READ 21832232 + 21832212 21832252 41 GAAAAATAGCCTCTTCTTTTCGCGATTCATCATTATTTGAT GAAAAATAGCCTCTTCTTTTCGTGATTCATCATTATTTGAT < 41bp 0.754506803525664 0.471807729287386 0.3055512 0.30856526 prediction 0.509013607051328 Functional Loss - XPO7 ENSG00000130227 CDS Human protein_coding chr8:21832232 chr8:21832234 synonymous SNV . 0 23 hm5C_associated_SNPs_63879 0 0 1 0 2 XPO7 chr8:21832285 5'GT 21832285 Upstream 52bp
chr20 43942756 43942756 1 + C T rs200998587 43942754 + 43942734 43942774 41 TCCCTGGTGCAGCTCGTCTGCACGGTCACCGGCATCACACT TCCCTGGTGCAGCTCGTCTGCATGGTCACCGGCATCACACT < 41bp 0.75791643210144 0.50342240540988 0.27973765 0.34475762 prediction 0.50898805338312 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43942754 chr20:43942756 nonsynonymous SNV 0.386 4 23 hm5C_associated_SNPs_63881 0 0 0 0 2 RBPJL chr20:43942675 3'AG 43942675 Downstream 82bp
chr20 43942756 43942756 1 + C T rs200998587 43942754 + 43942734 43942774 41 TCCCTGGTGCAGCTCGTCTGCACGGTCACCGGCATCACACT TCCCTGGTGCAGCTCGTCTGCATGGTCACCGGCATCACACT < 41bp 0.75791643210144 0.50342240540988 0.27973765 0.34475762 prediction 0.50898805338312 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43942754 chr20:43942756 nonsynonymous SNV 0.386 4 23 hm5C_associated_SNPs_63881 0 0 0 0 2 RBPJL chr20:43942784 5'GT 43942784 Upstream 29bp
chr1 230907841 230907841 1 + G C BLCA 230907840 + 230907820 230907860 41 GAGTGGAACGGGTCGTGGAGCGACAGGTCAGTCACCCTATC GAGTGGAACGGGTCGTGGAGCCACAGGTCAGTCACCCTATC < 41bp 0.855955124410907 0.601463921050251 0.33800548 0.28068668 prediction 0.508982406721313 Functional Loss - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230907840 chr1:230907841 nonsynonymous SNV 0.973 5 22 hm5C_associated_SNPs_63882 0 0 0 0 2 CAPN9 chr1:230907760 3'AG 230907760 Downstream 82bp
chr1 230907841 230907841 1 + G C BLCA 230907840 + 230907820 230907860 41 GAGTGGAACGGGTCGTGGAGCGACAGGTCAGTCACCCTATC GAGTGGAACGGGTCGTGGAGCCACAGGTCAGTCACCCTATC < 41bp 0.855955124410907 0.601463921050251 0.33800548 0.28068668 prediction 0.508982406721313 Functional Loss - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230907840 chr1:230907841 nonsynonymous SNV 0.973 5 22 hm5C_associated_SNPs_63882 0 0 0 0 2 CAPN9 chr1:230907845 5'GT 230907845 Upstream 5bp
chr1 230910361 230910361 1 + G T CESC 230910358 + 230910338 230910378 41 AGCGTCTGTGTCACACTGCTCTGGATGATGGGGAATTCTGG AGCGTCTGTGTCACACTGCTCTGTATGATGGGGAATTCTGG < 41bp 0.75449005846929 0.358062535015048 0.23326114 0.16106778 prediction 0.508980116938579 Functional Loss - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230910358 chr1:230910361 nonsynonymous SNV 0.879 4 24 hm5C_associated_SNPs_63883 0 0 0 0 2 CAPN9 chr1:230910300 3'AG 230910300 Downstream 62bp
chr1 230910361 230910361 1 + G T CESC 230910358 + 230910338 230910378 41 AGCGTCTGTGTCACACTGCTCTGGATGATGGGGAATTCTGG AGCGTCTGTGTCACACTGCTCTGTATGATGGGGAATTCTGG < 41bp 0.75449005846929 0.358062535015048 0.23326114 0.16106778 prediction 0.508980116938579 Functional Loss - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230910358 chr1:230910361 nonsynonymous SNV 0.879 4 24 hm5C_associated_SNPs_63883 0 0 0 0 2 CAPN9 chr1:230910377 5'GT 230910377 Upstream 17bp
chr19 42223887 42223887 1 + A T GBM 42223883 + 42223863 42223903 41 CCCTCCATCTCCAGCAACAACTCCAAACCCGTGGAGGACAA CCCTCCATCTCCAGCAACAACTCCTAACCCGTGGAGGACAA < 41bp 0.754480292069764 0.403574668536447 0.96953833 0.33939523 prediction 0.508960584139527 Functional Loss - CEACAM5 ENSG00000105388 CDS Human protein_coding chr19:42223883 chr19:42223887 stopgain 0.416 0 25 hm5C_associated_SNPs_63886 0 0 0 0 1 CEACAM5 chr19:42223849 3'AG 42223849 Downstream 39bp
chr8 19701662 19701662 1 + C T UCEC 19701660 + 19701640 19701680 41 GTTGCTTCAGCAAGAGTGGCCACGGGGCGAGAATCTTTTCC GTTGCTTCAGCAAGAGTGGCCATGGGGCGAGAATCTTTTCC < 41bp 0.754476486480915 0.489523014494454 0.48637196 0.39359942 prediction 0.50895297296183 Functional Loss - INTS10 ENSG00000104613 CDS Human protein_coding chr8:19701660 chr8:19701662 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_63887 0 0 1 0 2 INTS10 chr8:19701587 3'AG 19701587 Downstream 76bp
chr8 19701662 19701662 1 + C T UCEC 19701660 + 19701640 19701680 41 GTTGCTTCAGCAAGAGTGGCCACGGGGCGAGAATCTTTTCC GTTGCTTCAGCAAGAGTGGCCATGGGGCGAGAATCTTTTCC < 41bp 0.754476486480915 0.489523014494454 0.48637196 0.39359942 prediction 0.50895297296183 Functional Loss - INTS10 ENSG00000104613 CDS Human protein_coding chr8:19701660 chr8:19701662 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_63887 0 0 1 0 2 INTS10 chr8:19701749 5'GT 19701749 Upstream 88bp
chr17 7259595 7259595 1 + G T UCEC 7259593 + 7259573 7259613 41 GCCCCGAAAGCGCTGCTTCCCAGGTCCTCACGCCCATCTTG GCCCCGAAAGCGCTGCTTCCCATGTCCTCACGCCCATCTTG < 41bp 0.892091065126564 0.637623061532892 0.9140755 0.13696402 prediction 0.508936007187343 Functional Loss - TMEM95 ENSG00000182896 CDS Human protein_coding chr17:7259593 chr17:7259595 stopgain 0.980 0 23 hm5C_associated_SNPs_63892 0 0 0 0 2 TMEM95 chr17:7259515 3'AG 7259515 Downstream 81bp
chr17 7259595 7259595 1 + G T UCEC 7259593 + 7259573 7259613 41 GCCCCGAAAGCGCTGCTTCCCAGGTCCTCACGCCCATCTTG GCCCCGAAAGCGCTGCTTCCCATGTCCTCACGCCCATCTTG < 41bp 0.892091065126564 0.637623061532892 0.9140755 0.13696402 prediction 0.508936007187343 Functional Loss - TMEM95 ENSG00000182896 CDS Human protein_coding chr17:7259593 chr17:7259595 stopgain 0.980 0 23 hm5C_associated_SNPs_63892 0 0 0 0 2 TMEM95 chr17:7259595 5'GT 7259595 Upstream 1bp
chr17 41006560 41006560 1 + C T BRCA 41006558 + 41006538 41006578 41 GCTGCAGAGGCTGCAGGTGACCCGGAAGCTGCTGGAGATGG GCTGCAGAGGCTGCAGGTGACCTGGAAGCTGCTGGAGATGG < 41bp 0.754458621601437 0.497732786451851 0.36787066 0.36995092 prediction 0.508917243202873 Functional Loss - AOC3 ENSG00000131471 CDS Human protein_coding chr17:41006558 chr17:41006560 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_63894 0 0 1 0 2 AOC3 chr17:41006465 3'AG 41006465 Downstream 96bp
chr17 41006560 41006560 1 + C T BRCA 41006558 + 41006538 41006578 41 GCTGCAGAGGCTGCAGGTGACCCGGAAGCTGCTGGAGATGG GCTGCAGAGGCTGCAGGTGACCTGGAAGCTGCTGGAGATGG < 41bp 0.754458621601437 0.497732786451851 0.36787066 0.36995092 prediction 0.508917243202873 Functional Loss - AOC3 ENSG00000131471 CDS Human protein_coding chr17:41006558 chr17:41006560 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_63894 0 0 1 0 2 AOC3 chr17:41006554 3'AG 41006554 Downstream 7bp
chrX 69497988 69497988 1 + C T LUSC 69497986 + 69497966 69498006 41 ACTGTGTTCATTCAGGAATTCACGTGAGCTGGTGCTGGGGC ACTGTGTTCATTCAGGAATTCATGTGAGCTGGTGCTGGGGC < 41bp 0.777310639393657 0.522860668218596 0.17207775 0.16264006 prediction 0.508899942350121 Functional Loss - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69497986 chrX:69497988 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_63896 0 0 0 0 2 ARR3 chrX:69497916 3'AG 69497916 Downstream 73bp
chrX 69497988 69497988 1 + C T LUSC 69497986 + 69497966 69498006 41 ACTGTGTTCATTCAGGAATTCACGTGAGCTGGTGCTGGGGC ACTGTGTTCATTCAGGAATTCATGTGAGCTGGTGCTGGGGC < 41bp 0.777310639393657 0.522860668218596 0.17207775 0.16264006 prediction 0.508899942350121 Functional Loss - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69497986 chrX:69497988 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_63896 0 0 0 0 2 ARR3 chrX:69497988 5'GT 69497988 Upstream 1bp
chr4 154237038 154237038 1 + C T LUSC 154237036 + 154237016 154237056 41 TTTTGGCATACGGGGACGCTCTCCGGGGCAGCTGCAGCGGC TTTTGGCATACGGGGACGCTCTTCGGGGCAGCTGCAGCGGC < 41bp 0.817454676856908 0.563012343448858 0.59054583 0.5125489 prediction 0.508884666816099 Functional Loss - TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154237036 chr4:154237038 nonsynonymous SNV 0.184 3 23 hm5C_associated_SNPs_63897 0 0 1 0 1 TRIM2 chr4:154236984 3'AG 154236984 Downstream 55bp
chr12 57944087 57944087 1 + G T LUSC 57944084 + 57944064 57944104 41 ACCAACAACGAATGTAGCATCAAGGTGCTCTGCCGATTCCG ACCAACAACGAATGTAGCATCAATGTGCTCTGCCGATTCCG < 41bp 0.754439177240532 0.360544336242327 0.7744533 0.13140255 prediction 0.508878354481064 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57944084 chr12:57944087 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_63898 0 0 0 0 1 KIF5A chr12:57944183 5'GT 57944183 Upstream 97bp
chr10 18690931 18690931 1 + G C BLCA 18690927 + 18690907 18690947 41 GAGGACCGGGAGGCAGTGCGCAGAGAAGCGGAGCGGCAGGC GAGGACCGGGAGGCAGTGCGCAGACAAGCGGAGCGGCAGGC < 41bp 0.754435872236781 0.486859961891757 0.8863541 0.6324918 prediction 0.508871744473561 Functional Loss - CACNB2 ENSG00000165995 CDS Human protein_coding chr10:18690927 chr10:18690931 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_63899 0 0 0 0 1 CACNB2 chr10:18690972 5'GT 18690972 Upstream 42bp
chr10 18690929 18690929 1 + G T LUAD 18690927 + 18690907 18690947 41 GAGGACCGGGAGGCAGTGCGCAGAGAAGCGGAGCGGCAGGC GAGGACCGGGAGGCAGTGCGCATAGAAGCGGAGCGGCAGGC < 41bp 0.754435872236781 0.43809592453469 0.8863541 0.18467912 prediction 0.508871744473561 Functional Loss - CACNB2 ENSG00000165995 CDS Human protein_coding chr10:18690927 chr10:18690929 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_63900 0 0 0 0 1 CACNB2 chr10:18690972 5'GT 18690972 Upstream 44bp
chr12 2929267 2929267 1 + G C LUSC 2929266 + 2929246 2929286 41 CCACAGATGGAGATGGGTGTCGTGAGCTGGTGGTGGGCTAC CCACAGATGGAGATGGGTGTCCTGAGCTGGTGGTGGGCTAC < 41bp 0.857939305547085 0.603506122459356 0.467168 0.288263 prediction 0.508866366175458 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2929266 chr12:2929267 nonsynonymous SNV 0.684 1 22 hm5C_associated_SNPs_63901 0 0 1 1 1 ITFG2 chr12:2929252 3'AG 2929252 Downstream 16bp
chr16 31371096 31371096 1 + C T COAD 31371094 + 31371074 31371114 41 ATCTCCTCCCGCAACTTTGCCACGATGATGAACTTCGTGAG ATCTCCTCCCGCAACTTTGCCATGATGATGAACTTCGTGAG < 41bp 0.800390005123656 0.54595943540724 0.27517968 0.103797674 prediction 0.508861139432832 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31371094 chr16:31371096 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_63903 0 0 0 0 1 ITGAX chr16:31371151 5'GT 31371151 Upstream 56bp
chr5 10261724 10261724 1 + C T BRCA 10261722 + 10261702 10261742 41 GTCCCCAGGTTCTCAGAGCTCACAGCCGAGAAGCTGGGCTT GTCCCCAGGTTCTCAGAGCTCATAGCCGAGAAGCTGGGCTT < 41bp 0.803884007216547 0.549469355461208 0.72443944 0.7995694 prediction 0.508829303510676 Functional Loss - CCT5 ENSG00000150753 CDS Human protein_coding chr5:10261722 chr5:10261724 nonsynonymous SNV 0.873 2 23 hm5C_associated_SNPs_63904 0 0 1 0 1 CCT5 chr5:10261672 3'AG 10261672 Downstream 53bp
chr7 73477984 73477984 1 + G C SKCM 73477980 + 73477960 73478000 41 GAGCCGCTGGGCTCGGAGGACTCGGAGTCGGAGGGCTTGGA GAGCCGCTGGGCTCGGAGGACTCGCAGTCGGAGGGCTTGGA < 41bp 0.7544047702708 0.491329280244372 0.9268058 0.85826796 prediction 0.5088095405416 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73477980 chr7:73477984 nonsynonymous SNV 0.010 3 25 hm5C_associated_SNPs_63907 0 0 0 0 2 ELN chr7:73477951 3'AG 73477951 Downstream 34bp
chr7 73477984 73477984 1 + G C SKCM 73477980 + 73477960 73478000 41 GAGCCGCTGGGCTCGGAGGACTCGGAGTCGGAGGGCTTGGA GAGCCGCTGGGCTCGGAGGACTCGCAGTCGGAGGGCTTGGA < 41bp 0.7544047702708 0.491329280244372 0.9268058 0.85826796 prediction 0.5088095405416 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73477980 chr7:73477984 nonsynonymous SNV 0.010 3 25 hm5C_associated_SNPs_63907 0 0 0 0 2 ELN chr7:73478025 5'GT 73478025 Upstream 42bp
chr8 145731495 145731495 1 + T C SKCM 145731494 + 145731474 145731514 41 CTTGCCTCCTTCCACTCCACCTCCAAGGGCTACATGGGCGA CTTGCCTCCTTCCACTCCACCCCCAAGGGCTACATGGGCGA < 41bp 0.768908253327181 0.514521732415844 0.9459044 0.022152364 prediction 0.508773041822674 Functional Loss - GPT ENSG00000167701 CDS Human protein_coding chr8:145731494 chr8:145731495 nonsynonymous SNV 0.869 5 22 hm5C_associated_SNPs_63910 0 0 0 0 1 GPT chr8:145731514 5'GT 145731514 Upstream 20bp
chr21 43710232 43710232 1 + G C SKCM 43710231 + 43710211 43710251 41 GGCCTGCTGTACTTGGGGATCGGGAACGAAGCCAAGAAGGT GGCCTGCTGTACTTGGGGATCCGGAACGAAGCCAAGAAGGT < 41bp 0.860391955189775 0.60600847634526 0.6584924 0.32178187 prediction 0.508766957689031 Functional Loss - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43710231 chr21:43710232 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_63911 0 0 0 0 2 ABCG1 chr21:43710160 3'AG 43710160 Downstream 73bp
chr21 43710232 43710232 1 + G C SKCM 43710231 + 43710211 43710251 41 GGCCTGCTGTACTTGGGGATCGGGAACGAAGCCAAGAAGGT GGCCTGCTGTACTTGGGGATCCGGAACGAAGCCAAGAAGGT < 41bp 0.860391955189775 0.60600847634526 0.6584924 0.32178187 prediction 0.508766957689031 Functional Loss - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43710231 chr21:43710232 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_63911 0 0 0 0 2 ABCG1 chr21:43710328 5'GT 43710328 Upstream 97bp
chr19 58152126 58152126 1 + G T LIHC 58152123 + 58152103 58152143 41 ACCTTCTGAACAGAGAATTTCTGGAGAAAGAGTGCCACAGT ACCTTCTGAACAGAGAATTTCTGTAGAAAGAGTGCCACAGT < 41bp 0.899404342924545 0.645025293670059 0.69673806 0.15914431 prediction 0.508758098508972 Functional Loss - ZNF211 ENSG00000121417 CDS Human protein_coding chr19:58152123 chr19:58152126 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_63913 0 0 1 0 1 ZNF211 chr19:58152072 3'AG 58152072 Downstream 55bp
chr4 90816463 90816463 1 + A T rs116306564 90816459 + 90816439 90816479 41 CAGAAGGAGTGGTCAAGTTACAGAATCTTACCCTCCCAACC CAGAAGGAGTGGTCAAGTTACAGATTCTTACCCTCCCAACC < 41bp 0.754376441178429 0.460497939122369 0.20134622 0.19130784 prediction 0.508752882356857 Functional Loss - MMRN1 ENSG00000138722 CDS Human protein_coding chr4:90816459 chr4:90816463 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_63914 0 0 0 0 1 MMRN1 chr4:90816435 3'AG 90816435 Downstream 29bp
chr2 231405666 231405666 1 + G T UCEC 231405664 + 231405644 231405684 41 CAGAAAGCCAATCAGGTCATCAGGAATCTGAAGTCCTGATG CAGAAAGCCAATCAGGTCATCATGAATCTGAAGTCCTGATG < 41bp 0.754376151773025 0.416569154131117 0.91025454 0.21638918 prediction 0.50875230354605 Functional Loss - SP100 ENSG00000067066 CDS Human protein_coding chr2:231405664 chr2:231405666 nonsynonymous SNV 0.815 2 23 hm5C_associated_SNPs_63915 0 0 0 0 2 SP100 chr2:231405591 3'AG 231405591 Downstream 76bp
chr2 231405666 231405666 1 + G T UCEC 231405664 + 231405644 231405684 41 CAGAAAGCCAATCAGGTCATCAGGAATCTGAAGTCCTGATG CAGAAAGCCAATCAGGTCATCATGAATCTGAAGTCCTGATG < 41bp 0.754376151773025 0.416569154131117 0.91025454 0.21638918 prediction 0.50875230354605 Functional Loss - SP100 ENSG00000067066 CDS Human protein_coding chr2:231405664 chr2:231405666 nonsynonymous SNV 0.815 2 23 hm5C_associated_SNPs_63915 0 0 0 0 2 SP100 chr2:231405711 5'GT 231405711 Upstream 46bp
chrX 134680807 134680807 1 + G T UCEC 134680805 + 134680785 134680825 41 CACACAGATGTGTGAAGTCACAGGAGGTATTGGCAATATTT CACACAGATGTGTGAAGTCACATGAGGTATTGGCAATATTT < 41bp 0.754374850148986 0.418540016483099 0.52527076 0.20268747 prediction 0.508749700297972 Functional Loss - INTS6L ENSG00000165359 CDS Human protein_coding chrX:134680805 chrX:134680807 stopgain 1.000 1 23 hm5C_associated_SNPs_63916 0 0 0 0 1 INTS6L chrX:134680810 5'GT 134680810 Upstream 4bp
chr15 65345338 65345338 1 + C T SKCM 65345336 + 65345316 65345356 41 GCAGCCACCAGAAAAAGAAACTCCAGAAGTCCTGCATTTGG GCAGCCACCAGAAAAAGAAACTTCAGAAGTCCTGCATTTGG < 41bp 0.778899322251113 0.524533311208479 0.9448948 0.8244666 prediction 0.508732022085268 Functional Loss - SLC51B ENSG00000186198 CDS Human protein_coding chr15:65345336 chr15:65345338 nonsynonymous SNV 0.235 0 23 hm5C_associated_SNPs_63917 0 0 0 0 1 SLC51B chr15:65345304 3'AG 65345304 Downstream 35bp
chr3 108074055 108074055 1 + C T LIHC 108074053 + 108074033 108074073 41 GTTTATCCTCGTCCAATTATCACGTGGAAAATGGACAACAC GTTTATCCTCGTCCAATTATCATGTGGAAAATGGACAACAC < 41bp 0.762570691578201 0.508216114571927 0.821489 0.6996494 prediction 0.508709154012548 Functional Loss - HHLA2 ENSG00000114455 CDS Human protein_coding chr3:108074053 chr3:108074055 nonsynonymous SNV 0.030 0 23 hm5C_associated_SNPs_63922 0 0 0 0 1 HHLA2 chr3:108073962 3'AG 108073962 Downstream 94bp
chr3 131068455 131068455 1 + C T GBM 131068453 + 131068433 131068473 41 TTGAAGAGGTCTATAATTACCTCAAGAGAGCAAGGCATCAG TTGAAGAGGTCTATAATTACCTTAAGAGAGCAAGGCATCAG < 41bp 0.754351634169424 0.477966507874047 0.12981969 0.11008686 prediction 0.508703268338848 Functional Loss - NEK11 ENSG00000114670 CDS Human protein_coding chr3:131068453 chr3:131068455 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_63923 0 0 0 0 1 NEK11 chr3:131068401 3'AG 131068401 Downstream 55bp
chr2 220098090 220098090 1 + C T COAD 220098088 + 220098068 220098108 41 AGCCCAGGGGCTTCGGGATGCCCGAGGTGGGCCATCACACT AGCCCAGGGGCTTCGGGATGCCTGAGGTGGGCCATCACACT < 41bp 0.79230358541191 0.537952600955907 0.7670964 0.8083192 prediction 0.508701968912007 Functional Loss - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220098088 chr2:220098090 stopgain 0.646 1 23 hm5C_associated_SNPs_63924 0 0 1 0 2 ANKZF1 chr2:220098008 3'AG 220098008 Downstream 83bp
chr2 220098090 220098090 1 + C T COAD 220098088 + 220098068 220098108 41 AGCCCAGGGGCTTCGGGATGCCCGAGGTGGGCCATCACACT AGCCCAGGGGCTTCGGGATGCCTGAGGTGGGCCATCACACT < 41bp 0.79230358541191 0.537952600955907 0.7670964 0.8083192 prediction 0.508701968912007 Functional Loss - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220098088 chr2:220098090 stopgain 0.646 1 23 hm5C_associated_SNPs_63924 0 0 1 0 2 ANKZF1 chr2:220098155 5'GT 220098155 Upstream 66bp
chr2 101097605 101097605 1 + G T LUSC 101097602 + 101097582 101097622 41 TTGCAGGATCACACTGCGACCTGGGGACGACCCTTTTTCCT TTGCAGGATCACACTGCGACCTGTGGACGACCCTTTTTCCT < 41bp 0.754348667801664 0.376745603771766 0.45289028 0.038538396 prediction 0.508697335603329 Functional Loss - NMS ENSG00000204640 CDS Human protein_coding chr2:101097602 chr2:101097605 nonsynonymous SNV 0.110 1 24 hm5C_associated_SNPs_63927 0 0 0 0 1 NMS chr2:101097588 3'AG 101097588 Downstream 18bp
chrX 149642014 149642014 1 + C T UCEC 149642012 + 149641992 149642032 41 CGGTGAAGCCCCAGCATCAACACGGGAACTCTTTCACTAGC CGGTGAAGCCCCAGCATCAACATGGGAACTCTTTCACTAGC < 41bp 0.770817466843865 0.516481817536028 0.7567868 0.64207166 prediction 0.508671298615676 Functional Loss - MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149642012 chrX:149642014 synonymous SNV . 0 23 hm5C_associated_SNPs_63929 0 0 1 0 2 MAMLD1 chrX:149641952 3'AG 149641952 Downstream 63bp
chrX 149642014 149642014 1 + C T UCEC 149642012 + 149641992 149642032 41 CGGTGAAGCCCCAGCATCAACACGGGAACTCTTTCACTAGC CGGTGAAGCCCCAGCATCAACATGGGAACTCTTTCACTAGC < 41bp 0.770817466843865 0.516481817536028 0.7567868 0.64207166 prediction 0.508671298615676 Functional Loss - MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149642012 chrX:149642014 synonymous SNV . 0 23 hm5C_associated_SNPs_63929 0 0 1 0 2 MAMLD1 chrX:149642074 5'GT 149642074 Upstream 61bp
chr20 3725612 3725612 1 + T C COAD 3725611 + 3725591 3725631 41 CCCGACCTGCCTGCTGCTGACTCCGGAGGGCGCCTTCCACA CCCGACCTGCCTGCTGCTGACCCCGGAGGGCGCCTTCCACA < 41bp 0.768566822057771 0.514238937970295 0.7910462 0.24241135 prediction 0.508655768174952 Functional Loss - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3725611 chr20:3725612 synonymous SNV . 0 22 hm5C_associated_SNPs_63933 0 0 0 0 1 HSPA12B chr20:3725549 3'AG 3725549 Downstream 64bp
chr10 99338352 99338352 1 + C T UCEC 99338350 + 99338330 99338370 41 GCTGACGGGGGGTCAGCCGACACGTGCGACCAGGTGATGCT GCTGACGGGGGGTCAGCCGACATGTGCGACCAGGTGATGCT < 41bp 0.770008146103216 0.515682902282881 0.36347234 0.40148893 prediction 0.508650487640671 Functional Loss - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99338350 chr10:99338352 nonsynonymous SNV 0.591 4 23 hm5C_associated_SNPs_63934 0 0 0 0 2 ANKRD2 chr10:99338255 3'AG 99338255 Downstream 98bp
chr10 99338352 99338352 1 + C T UCEC 99338350 + 99338330 99338370 41 GCTGACGGGGGGTCAGCCGACACGTGCGACCAGGTGATGCT GCTGACGGGGGGTCAGCCGACATGTGCGACCAGGTGATGCT < 41bp 0.770008146103216 0.515682902282881 0.36347234 0.40148893 prediction 0.508650487640671 Functional Loss - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99338350 chr10:99338352 nonsynonymous SNV 0.591 4 23 hm5C_associated_SNPs_63934 0 0 0 0 2 ANKRD2 chr10:99338362 5'GT 99338362 Upstream 11bp
chr6 33658852 33658852 1 + C T READ 33658850 + 33658830 33658870 41 TCCTCAAGGATGACTTCATTCTCGAGGTCGACCGGCTGCCC TCCTCAAGGATGACTTCATTCTTGAGGTCGACCGGCTGCCC < 41bp 0.793727099285564 0.539414756735042 0.07766625 0.008479893 prediction 0.508624685101044 Functional Loss - ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33658850 chr6:33658852 synonymous SNV . 0 23 hm5C_associated_SNPs_63937 0 0 1 0 1 ITPR3 chr6:33658886 5'GT 33658886 Upstream 35bp
chr19 55853326 55853326 1 + G T PAAD 55853324 + 55853304 55853344 41 CATGGGGCCCGACAGAGTGACAGCACGAGAACTGTGCGAGA CATGGGGCCCGACAGAGTGACATCACGAGAACTGTGCGAGA < 41bp 0.754311975044941 0.41065973438353 0.3356285 0.16785887 prediction 0.508623950089881 Functional Loss - KMT5C ENSG00000133247 CDS Human protein_coding chr19:55853324 chr19:55853326 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_63938 0 0 1 0 1 KMT5C chr19:55853414 5'GT 55853414 Upstream 89bp
chr3 157920940 157920940 1 + C T UCEC 157920938 + 157920918 157920958 41 CAGAAGAACGCGTAGTCGGTCTCGGGATAGAGAACGACGTA CAGAAGAACGCGTAGTCGGTCTTGGGATAGAGAACGACGTA < 41bp 0.754310392198014 0.482970141657018 0.04088798 0.085173875 prediction 0.508620784396028 Functional Loss - RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157920938 chr3:157920940 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_63939 0 0 1 0 2 RSRC1 chr3:157920861 3'AG 157920861 Downstream 80bp
chr3 157920940 157920940 1 + C T UCEC 157920938 + 157920918 157920958 41 CAGAAGAACGCGTAGTCGGTCTCGGGATAGAGAACGACGTA CAGAAGAACGCGTAGTCGGTCTTGGGATAGAGAACGACGTA < 41bp 0.754310392198014 0.482970141657018 0.04088798 0.085173875 prediction 0.508620784396028 Functional Loss - RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157920938 chr3:157920940 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_63939 0 0 1 0 2 RSRC1 chr3:157921034 5'GT 157921034 Upstream 95bp
chr18 48575104 48575104 1 + A T LUAD 48575100 + 48575080 48575120 41 CATGTGATCTATGCCCGTCTCTGGAGGTGGCCTGATCTTCA CATGTGATCTATGCCCGTCTCTGGTGGTGGCCTGATCTTCA < 41bp 0.754308487133326 0.447059977652628 0.3559867 0.16103607 prediction 0.508616974266653 Functional Loss - SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48575100 chr18:48575104 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_63940 0 0 1 1 1 SMAD4 chr18:48575056 3'AG 48575056 Downstream 49bp
chr3 127396078 127396078 1 + C T HNSC 127396076 + 127396056 127396096 41 CCCCACCTGCAGACCCCCGCCTCCGGGAGGACATGGCGCTG CCCCACCTGCAGACCCCCGCCTTCGGGAGGACATGGCGCTG < 41bp 0.8018467036681 0.547545488990899 0.21950978 0.21371922 prediction 0.508602429354402 Functional Loss - ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127396076 chr3:127396078 synonymous SNV . 0 23 hm5C_associated_SNPs_63942 0 0 1 0 2 ABTB1 chr3:127396011 3'AG 127396011 Downstream 68bp
chr3 127396078 127396078 1 + C T HNSC 127396076 + 127396056 127396096 41 CCCCACCTGCAGACCCCCGCCTCCGGGAGGACATGGCGCTG CCCCACCTGCAGACCCCCGCCTTCGGGAGGACATGGCGCTG < 41bp 0.8018467036681 0.547545488990899 0.21950978 0.21371922 prediction 0.508602429354402 Functional Loss - ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127396076 chr3:127396078 synonymous SNV . 0 23 hm5C_associated_SNPs_63942 0 0 1 0 2 ABTB1 chr3:127396129 5'GT 127396129 Upstream 52bp
chr14 95034604 95034604 1 + G T HNSC 95034602 + 95034582 95034622 41 ACTTATCCGGCATCACCAAACAGCAAAAACTGGAGGCATCC ACTTATCCGGCATCACCAAACATCAAAAACTGGAGGCATCC < 41bp 0.754297147134653 0.41370482726894 0.73055786 0.112425655 prediction 0.508594294269305 Functional Loss - SERPINA4 ENSG00000100665 CDS Human protein_coding chr14:95034602 chr14:95034604 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_63943 0 0 0 0 1 SERPINA4 chr14:95034625 5'GT 95034625 Upstream 22bp
chr14 95034606 95034606 1 + A C READ 95034602 + 95034582 95034622 41 ACTTATCCGGCATCACCAAACAGCAAAAACTGGAGGCATCC ACTTATCCGGCATCACCAAACAGCCAAAACTGGAGGCATCC < 41bp 0.754297147134653 0.340443788336435 0.73055786 0.5366418 prediction 0.508594294269305 Functional Loss - SERPINA4 ENSG00000100665 CDS Human protein_coding chr14:95034602 chr14:95034606 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_63944 0 0 0 0 1 SERPINA4 chr14:95034625 5'GT 95034625 Upstream 20bp
chr3 44952815 44952815 1 + G T COAD 44952812 + 44952792 44952832 41 CTTGTCTGCAATTGTATCTTCAAGAATACCCTGGCCATCCC CTTGTCTGCAATTGTATCTTCAATAATACCCTGGCCATCCC < 41bp 0.754296237027845 0.37080586117445 0.13684893 0.10587537 prediction 0.50859247405569 Functional Loss - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44952812 chr3:44952815 nonsynonymous SNV 0.006 1 24 hm5C_associated_SNPs_63945 0 0 0 0 2 TGM4 chr3:44952762 3'AG 44952762 Downstream 54bp
chr3 44952815 44952815 1 + G T COAD 44952812 + 44952792 44952832 41 CTTGTCTGCAATTGTATCTTCAAGAATACCCTGGCCATCCC CTTGTCTGCAATTGTATCTTCAATAATACCCTGGCCATCCC < 41bp 0.754296237027845 0.37080586117445 0.13684893 0.10587537 prediction 0.50859247405569 Functional Loss - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44952812 chr3:44952815 nonsynonymous SNV 0.006 1 24 hm5C_associated_SNPs_63945 0 0 0 0 2 TGM4 chr3:44952898 5'GT 44952898 Upstream 84bp
chr11 22391664 22391664 1 + G T LUSC 22391662 + 22391642 22391682 41 GTTGCAAACTTCTGCAGAAGCTGGACTTTTTATTTATTGCT GTTGCAAACTTCTGCAGAAGCTTGACTTTTTATTTATTGCT < 41bp 0.75427293694126 0.432773195244801 0.05885327 0.028211772 prediction 0.508545873882519 Functional Loss - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22391662 chr11:22391664 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_63948 0 0 0 0 2 SLC17A6 chr11:22391585 3'AG 22391585 Downstream 80bp
chr11 22391664 22391664 1 + G T LUSC 22391662 + 22391642 22391682 41 GTTGCAAACTTCTGCAGAAGCTGGACTTTTTATTTATTGCT GTTGCAAACTTCTGCAGAAGCTTGACTTTTTATTTATTGCT < 41bp 0.75427293694126 0.432773195244801 0.05885327 0.028211772 prediction 0.508545873882519 Functional Loss - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22391662 chr11:22391664 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_63948 0 0 0 0 2 SLC17A6 chr11:22391734 5'GT 22391734 Upstream 71bp
chr1 33562402 33562402 1 + C T BLCA 33562400 + 33562380 33562420 41 CTGGGGCGCTACTACGTGACCTCGGCCTTCACTGTGGCAGT CTGGGGCGCTACTACGTGACCTTGGCCTTCACTGTGGCAGT < 41bp 0.754262557006336 0.489310110309754 0.08113089 0.0380615 prediction 0.508525114012672 Functional Loss - AZIN2 ENSG00000142920 CDS Human protein_coding chr1:33562400 chr1:33562402 nonsynonymous SNV 0.873 4 23 hm5C_associated_SNPs_63949 0 0 0 0 1 AZIN2 chr1:33562308 3'AG 33562308 Downstream 95bp
chr11 59556354 59556354 1 + G C LUAD 59556350 + 59556330 59556370 41 GCCTTTATTTACCCAGAAACCAAGGATGACCTAGAGCAGCT GCCTTTATTTACCCAGAAACCAAGCATGACCTAGAGCAGCT < 41bp 0.754261932952753 0.465134491623717 0.6620052 0.27119273 prediction 0.508523865905506 Functional Loss - STX3 ENSG00000166900 CDS Human protein_coding chr11:59556350 chr11:59556354 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_63950 0 0 1 0 1 STX3 chr11:59556346 3'AG 59556346 Downstream 9bp
chr17 73818665 73818665 1 + C T SKCM 73818663 + 73818643 73818683 41 GCCAGGGGCTGCCGAGCTGGCCCGACTTCGGCAAGAGCTGG GCCAGGGGCTGCCGAGCTGGCCTGACTTCGGCAAGAGCTGG < 41bp 0.780692357278874 0.526436083550724 0.02919203 0.0344612 prediction 0.5085125474563 Functional Loss - UNK ENSG00000132478 CDS Human protein_coding chr17:73818663 chr17:73818665 stopgain 0.998 1 23 hm5C_associated_SNPs_63953 0 0 1 0 1 UNK chr17:73818739 5'GT 73818739 Upstream 75bp
chr1 47606460 47606460 1 + C T GBM 47606458 + 47606438 47606478 41 ACCCTCGTTGACAGTTCCAACACGACCAGGAGCTACAACGG ACCCTCGTTGACAGTTCCAACATGACCAGGAGCTACAACGG < 41bp 0.764698409606073 0.510444466210448 0.17891538 0.10876933 prediction 0.508507886791248 Functional Loss - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47606458 chr1:47606460 synonymous SNV . 0 23 hm5C_associated_SNPs_63954 0 0 0 0 1 CYP4A22 chr1:47606452 3'AG 47606452 Downstream 9bp
chr8 22432219 22432219 1 + G T LUSC 22432216 + 22432196 22432236 41 CCAGAAATTCGGAACGTTCCCTGGAAATTACGTTGCCCCGG CCAGAAATTCGGAACGTTCCCTGTAAATTACGTTGCCCCGG < 41bp 0.907791018726057 0.653541544251979 0.40676066 0.1431809 prediction 0.508498948948155 Functional Loss - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22432216 chr8:22432219 stopgain 0.995 3 24 hm5C_associated_SNPs_63955 0 0 1 0 1 SORBS3 chr8:22432180 3'AG 22432180 Downstream 40bp
chr2 74438944 74438944 1 + C T UCEC 74438942 + 74438922 74438962 41 ATGTGGGAATAAATAGAGTTCACGATCCTGTAACTGCCAAA ATGTGGGAATAAATAGAGTTCATGATCCTGTAACTGCCAAA < 41bp 0.801756769342777 0.547508985370617 0.04013455 0.035530716 prediction 0.50849556794432 Functional Loss - MTHFD2 ENSG00000065911 CDS Human protein_coding chr2:74438942 chr2:74438944 synonymous SNV . 0 23 hm5C_associated_SNPs_63956 0 0 1 0 2 MTHFD2 chr2:74438868 3'AG 74438868 Downstream 77bp
chr2 74438944 74438944 1 + C T UCEC 74438942 + 74438922 74438962 41 ATGTGGGAATAAATAGAGTTCACGATCCTGTAACTGCCAAA ATGTGGGAATAAATAGAGTTCATGATCCTGTAACTGCCAAA < 41bp 0.801756769342777 0.547508985370617 0.04013455 0.035530716 prediction 0.50849556794432 Functional Loss - MTHFD2 ENSG00000065911 CDS Human protein_coding chr2:74438942 chr2:74438944 synonymous SNV . 0 23 hm5C_associated_SNPs_63956 0 0 1 0 2 MTHFD2 chr2:74438993 5'GT 74438993 Upstream 50bp
chr4 110384718 110384718 1 + A T LUSC 110384714 + 110384694 110384734 41 CAGTACTCTAACGTGGTCATCTCCAGGCCTTCCATCGACTC CAGTACTCTAACGTGGTCATCTCCTGGCCTTCCATCGACTC < 41bp 0.754244246000301 0.405535383680573 0.9330604 0.16422337 prediction 0.508488492000602 Functional Loss - SEC24B ENSG00000138802 CDS Human protein_coding chr4:110384714 chr4:110384718 synonymous SNV . 0 25 hm5C_associated_SNPs_63957 0 0 1 0 1 SEC24B chr4:110384800 5'GT 110384800 Upstream 83bp
chrX 48652250 48652250 1 + C T ACC 48652248 + 48652228 48652268 41 ATGGTATTCAGACTCGAAACCGCAAGGCATCTGGAAAAGGG ATGGTATTCAGACTCGAAACCGTAAGGCATCTGGAAAAGGG < 41bp 0.754236344174887 0.490608021614694 0.21019962 0.1604476 prediction 0.508472688349773 Functional Loss - GATA1 ENSG00000102145 CDS Human protein_coding chrX:48652248 chrX:48652250 synonymous SNV . 0 23 hm5C_associated_SNPs_63958 0 0 0 0 1 GATA1 chrX:48652200 3'AG 48652200 Downstream 51bp
chr5 74651235 74651235 1 + C T COAD 74651233 + 74651213 74651253 41 AGTCCTTGCAGATGGGATGACTCGTGGCCCAGTTGTGCGTC AGTCCTTGCAGATGGGATGACTTGTGGCCCAGTTGTGCGTC < 41bp 0.754231560016776 0.464968790220286 0.19563967 0.20005056 prediction 0.508463120033553 Functional Loss - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74651233 chr5:74651235 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_63960 0 0 1 0 1 HMGCR chr5:74651190 3'AG 74651190 Downstream 46bp
chr10 114044344 114044344 1 + A T UCEC 114044340 + 114044320 114044360 41 AAACCATCATCACCAAAATCCCCGAGTGTCCCTATGGATGG AAACCATCATCACCAAAATCCCCGTGTGTCCCTATGGATGG < 41bp 0.754219495237172 0.421937015234995 0.07861814 0.07693502 prediction 0.508438990474345 Functional Loss - TECTB ENSG00000119913 CDS Human protein_coding chr10:114044340 chr10:114044344 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_63963 0 0 0 0 1 TECTB chr10:114044293 3'AG 114044293 Downstream 52bp
chr5 14681593 14681593 1 + G T rs147790160 14681591 + 14681571 14681611 41 AGGGCTATGAAGAGGTTTCTCAGAAGTTCACCTCCATACGG AGGGCTATGAAGAGGTTTCTCATAAGTTCACCTCCATACGG < 41bp 0.871265954308849 0.617071046241297 0.85536945 0.24377134 prediction 0.508389816135103 Functional Loss - OTULIN ENSG00000154124 CDS Human protein_coding chr5:14681591 chr5:14681593 nonsynonymous SNV 0.994 0 23 hm5C_associated_SNPs_63968 0 0 1 0 1 OTULIN chr5:14681573 3'AG 14681573 Downstream 21bp
chr19 16989177 16989177 1 + C T UCEC 16989175 + 16989155 16989195 41 CCGAGGACTACATGTACCGTCGCGGGACCCTCTGCCGGGCC CCGAGGACTACATGTACCGTCGTGGGACCCTCTGCCGGGCC < 41bp 0.7541637789484 0.496449698122747 0.782174 0.8409351 prediction 0.508327557896799 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16989175 chr19:16989177 synonymous SNV . 0 23 hm5C_associated_SNPs_63976 0 0 1 0 1 SIN3B chr19:16989201 5'GT 16989201 Upstream 25bp
chr5 138163321 138163321 1 + C T THYM 138163319 + 138163299 138163339 41 GATGGCCGACTCGTCCTGCACGCGTGATGACCGTCGTGAGC GATGGCCGACTCGTCCTGCACGTGTGATGACCGTCGTGAGC < 41bp 0.802115465057185 0.547956740318043 0.34201166 0.3559092 prediction 0.508317449478283 Functional Loss - CTNNA1 ENSG00000044115 CDS Human protein_coding chr5:138163319 chr5:138163321 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_63977 0 0 1 0 2 CTNNA1 chr5:138163278 3'AG 138163278 Downstream 44bp
chr5 138163321 138163321 1 + C T THYM 138163319 + 138163299 138163339 41 GATGGCCGACTCGTCCTGCACGCGTGATGACCGTCGTGAGC GATGGCCGACTCGTCCTGCACGTGTGATGACCGTCGTGAGC < 41bp 0.802115465057185 0.547956740318043 0.34201166 0.3559092 prediction 0.508317449478283 Functional Loss - CTNNA1 ENSG00000044115 CDS Human protein_coding chr5:138163319 chr5:138163321 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_63977 0 0 1 0 2 CTNNA1 chr5:138163407 5'GT 138163407 Upstream 87bp
chr16 24902287 24902287 1 + G T LUSC 24902284 + 24902264 24902304 41 AACAGCAGCTGCGGGCTGCCCCGGGAAGATGCCTTCCATAT AACAGCAGCTGCGGGCTGCCCCGTGAAGATGCCTTCCATAT < 41bp 0.754154276838558 0.348785498067002 0.85097927 0.37676936 prediction 0.508308553677116 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24902284 chr16:24902287 synonymous SNV . 0 24 hm5C_associated_SNPs_63979 0 0 0 0 1 SLC5A11 chr16:24902190 3'AG 24902190 Downstream 98bp
chr6 132172368 132172368 1 + A C rs1044498 132172367 + 132172347 132172387 41 TGTTCAGATGACTGCAAGGACAAGGGCGACTGCTGCATCAA TGTTCAGATGACTGCAAGGACCAGGGCGACTGCTGCATCAA < 41bp 0.754143627839451 0.496948404244501 0.53301775 0.4558395 prediction 0.508287255678902 Functional Loss - ENPP1 ENSG00000197594 CDS Human protein_coding chr6:132172367 chr6:132172368 nonsynonymous SNV 0.010 0 22 hm5C_associated_SNPs_63982 6 0 1 0 2 ENPP1 chr6:132172282 3'AG 132172282 Downstream 87bp
chr6 132172368 132172368 1 + A C rs1044498 132172367 + 132172347 132172387 41 TGTTCAGATGACTGCAAGGACAAGGGCGACTGCTGCATCAA TGTTCAGATGACTGCAAGGACCAGGGCGACTGCTGCATCAA < 41bp 0.754143627839451 0.496948404244501 0.53301775 0.4558395 prediction 0.508287255678902 Functional Loss - ENPP1 ENSG00000197594 CDS Human protein_coding chr6:132172367 chr6:132172368 nonsynonymous SNV 0.010 0 22 hm5C_associated_SNPs_63982 6 0 1 0 2 ENPP1 chr6:132172407 5'GT 132172407 Upstream 40bp
chr10 5496321 5496321 1 + G T LUAD 5496318 + 5496298 5496338 41 AGAAACAGGATCCAAGAGTCCAAGACTTCCTCCAGCGATGT AGAAACAGGATCCAAGAGTCCAATACTTCCTCCAGCGATGT < 41bp 0.754123364244964 0.363259197857348 0.054980963 0.020142794 prediction 0.508246728489928 Functional Loss - NET1 ENSG00000173848 CDS Human protein_coding chr10:5496318 chr10:5496321 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_63987 0 0 1 0 1 NET1 chr10:5496228 3'AG 5496228 Downstream 94bp
chr1 89843685 89843685 1 + G T BRCA 89843682 + 89843662 89843702 41 GGTGACCCTAAGAATGACTCCTGGATCTTTGCCCTGGCTGT GGTGACCCTAAGAATGACTCCTGTATCTTTGCCCTGGCTGT < 41bp 0.754101890747395 0.364157811014524 0.3817882 0.25070345 prediction 0.508203781494789 Functional Loss - GBP6 ENSG00000183347 CDS Human protein_coding chr1:89843682 chr1:89843685 nonsynonymous SNV 0.969 3 24 hm5C_associated_SNPs_63989 0 0 0 0 1 GBP6 chr1:89843771 5'GT 89843771 Upstream 87bp
chr19 33639783 33639783 1 + G C LUSC 33639782 + 33639762 33639802 41 CATGGAATCTGCATAATGGACGCCGAGAACATCACCACCGT CATGGAATCTGCATAATGGACCCCGAGAACATCACCACCGT < 41bp 0.754092014658676 0.436389451764765 0.15026239 0.043391377 prediction 0.508184029317352 Functional Loss - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33639782 chr19:33639783 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_63990 0 0 0 0 1 WDR88 chr19:33639816 5'GT 33639816 Upstream 34bp
chr15 89164573 89164573 1 + G C rs545680983 89164572 + 89164552 89164592 41 TGTGGGAGCTGCCGGCTTTCCGGACGCCACGTGCAGACCGG TGTGGGAGCTGCCGGCTTTCCCGACGCCACGTGCAGACCGG < 41bp 0.823360923020209 0.569270322975352 0.923237 0.8944127 prediction 0.508181200089714 Functional Loss - AEN ENSG00000181026 UTR5 Human protein_coding chr15:89164572 chr15:89164573 . . 0 22 hm5C_associated_SNPs_63992 0 0 1 0 1 AEN chr15:89164613 5'GT 89164613 Upstream 41bp
chr1 207243705 207243705 1 + C T SKCM 207243703 + 207243683 207243723 41 GCAATGTCCTCGTCATCTCCCACCAGGCTGTCATGCGCTGC GCAATGTCCTCGTCATCTCCCATCAGGCTGTCATGCGCTGC < 41bp 0.81780648045844 0.563718903577215 0.19046274 0.110601366 prediction 0.50817515376245 Functional Loss - PFKFB2 ENSG00000123836 CDS Human protein_coding chr1:207243703 chr1:207243705 synonymous SNV . 0 23 hm5C_associated_SNPs_63993 0 0 0 0 2 PFKFB2 chr1:207243625 3'AG 207243625 Downstream 81bp
chr1 207243705 207243705 1 + C T SKCM 207243703 + 207243683 207243723 41 GCAATGTCCTCGTCATCTCCCACCAGGCTGTCATGCGCTGC GCAATGTCCTCGTCATCTCCCATCAGGCTGTCATGCGCTGC < 41bp 0.81780648045844 0.563718903577215 0.19046274 0.110601366 prediction 0.50817515376245 Functional Loss - PFKFB2 ENSG00000123836 CDS Human protein_coding chr1:207243703 chr1:207243705 synonymous SNV . 0 23 hm5C_associated_SNPs_63993 0 0 0 0 2 PFKFB2 chr1:207243754 5'GT 207243754 Upstream 50bp
chr1 160098533 160098533 1 + C T SARC 160098531 + 160098511 160098551 41 GAGACGCTGGGCTCCACGTCCACCATCTGCTCGGACAAGAC GAGACGCTGGGCTCCACGTCCATCATCTGCTCGGACAAGAC < 41bp 0.754084399789604 0.463427378330894 0.21838897 0.29745328 prediction 0.508168799579207 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160098531 chr1:160098533 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_63994 0 0 1 0 1 ATP1A2 chr1:160098442 3'AG 160098442 Downstream 92bp
chr6 167728730 167728730 1 + C T UCEC 167728728 + 167728708 167728748 41 AAGCTGCCTTCGCCAATTACCGCCTGTGGGAGGCCCTGGGC AAGCTGCCTTCGCCAATTACCGTCTGTGGGAGGCCCTGGGC < 41bp 0.780623212257829 0.526542746307355 0.7182798 0.6912848 prediction 0.508160931900947 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167728728 chr6:167728730 synonymous SNV . 0 23 hm5C_associated_SNPs_63997 0 0 0 0 1 UNC93A chr6:167728675 3'AG 167728675 Downstream 56bp
chr6 123100984 123100984 1 + G T SARC 123100982 + 123100962 123101002 41 CCTGGAAGCTGACCAACAGTCAGAACTTTGATGAGTACATG CCTGGAAGCTGACCAACAGTCATAACTTTGATGAGTACATG < 41bp 0.876158583569871 0.622081368381033 0.46631533 0.3525375 prediction 0.508154430377675 Functional Loss - FABP7 ENSG00000164434 CDS Human protein_coding chr6:123100982 chr6:123100984 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_63998 0 0 0 0 1 FABP7 chr6:123101012 5'GT 123101012 Upstream 29bp
chr3 172048460 172048460 1 + C T LUSC 172048458 + 172048438 172048478 41 GTAAGCCAGAAGGCTGTTCACCCGAGGAAGTGATCACCTAC GTAAGCCAGAAGGCTGTTCACCTGAGGAAGTGATCACCTAC < 41bp 0.754073013445671 0.483501927223666 0.5653201 0.5807758 prediction 0.508146026891341 Functional Loss - FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172048458 chr3:172048460 synonymous SNV . 0 23 hm5C_associated_SNPs_63999 0 0 1 0 1 FNDC3B chr3:172048505 5'GT 172048505 Upstream 46bp
chr2 113736228 113736228 1 + C T SKCM 113736226 + 113736206 113736246 41 CAACCACACTATGAGAGGCACTCCAGGAGACGCTGATGGTG CAACCACACTATGAGAGGCACTTCAGGAGACGCTGATGGTG < 41bp 0.778375345881094 0.52430382218418 0.88936794 0.12310973 prediction 0.508143047393828 Functional Loss - IL36G ENSG00000136688 CDS Human protein_coding chr2:113736226 chr2:113736228 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_64000 0 0 0 0 2 IL36G chr2:113736197 3'AG 113736197 Downstream 32bp
chr2 113736228 113736228 1 + C T SKCM 113736226 + 113736206 113736246 41 CAACCACACTATGAGAGGCACTCCAGGAGACGCTGATGGTG CAACCACACTATGAGAGGCACTTCAGGAGACGCTGATGGTG < 41bp 0.778375345881094 0.52430382218418 0.88936794 0.12310973 prediction 0.508143047393828 Functional Loss - IL36G ENSG00000136688 CDS Human protein_coding chr2:113736226 chr2:113736228 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_64000 0 0 0 0 2 IL36G chr2:113736270 5'GT 113736270 Upstream 43bp
chr8 86356319 86356319 1 + G T SARC 86356317 + 86356297 86356337 41 CTTTTAAAGAAGCCCTGAAGCAGCGCGATGGGATCGCTGTG CTTTTAAAGAAGCCCTGAAGCATCGCGATGGGATCGCTGTG < 41bp 0.754069535525333 0.405859955107524 0.8579141 0.27564073 prediction 0.508139071050666 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86356317 chr8:86356319 nonsynonymous SNV 0.677 0 23 hm5C_associated_SNPs_64002 0 0 0 0 2 CA3 chr8:86356263 3'AG 86356263 Downstream 57bp
chr8 86356319 86356319 1 + G T SARC 86356317 + 86356297 86356337 41 CTTTTAAAGAAGCCCTGAAGCAGCGCGATGGGATCGCTGTG CTTTTAAAGAAGCCCTGAAGCATCGCGATGGGATCGCTGTG < 41bp 0.754069535525333 0.405859955107524 0.8579141 0.27564073 prediction 0.508139071050666 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86356317 chr8:86356319 nonsynonymous SNV 0.677 0 23 hm5C_associated_SNPs_64002 0 0 0 0 2 CA3 chr8:86356355 5'GT 86356355 Upstream 37bp
chr6 33179254 33179254 1 + G T LUAD 33179252 + 33179232 33179272 41 GGCCCCCAGCCCCCCAGAGCCAGGTGGAGAAATTGAGCTCG GGCCCCCAGCCCCCCAGAGCCATGTGGAGAAATTGAGCTCG < 41bp 0.814269034769257 0.560203571345882 0.9363682 0.6020586 prediction 0.508130926846749 Functional Loss - RING1 ENSG00000204227 CDS Human protein_coding chr6:33179252 chr6:33179254 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_64003 0 0 1 0 1 RING1 chr6:33179324 5'GT 33179324 Upstream 71bp
chr7 150269240 150269240 1 + A T SKCM 150269236 + 150269216 150269256 41 GGGCCTGGAAGGCAAGAGCCCAGAAATTCCCAATTGAGAAT GGGCCTGGAAGGCAAGAGCCCAGATATTCCCAATTGAGAAT < 41bp 0.75406527076532 0.453112216092812 0.5346654 0.76136637 prediction 0.508130541530641 Functional Loss - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150269236 chr7:150269240 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_64004 0 0 0 0 1 GIMAP4 chr7:150269217 3'AG 150269217 Downstream 24bp
chr3 113323796 113323796 1 + G T LUAD 113323793 + 113323773 113323813 41 GCTGTGTTTTACGCGCTGCCCGTGATCCAGCTGGTCATTAC GCTGTGTTTTACGCGCTGCCCGTTATCCAGCTGGTCATTAC < 41bp 0.75405937977921 0.362899896255841 0.13254303 0.023776561 prediction 0.50811875955842 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113323793 chr3:113323796 synonymous SNV . 0 24 hm5C_associated_SNPs_64006 0 0 0 0 1 SIDT1 chr3:113323823 5'GT 113323823 Upstream 28bp
chr3 127337955 127337955 1 + G T OV 127337953 + 127337933 127337973 41 GAGGAGGGGCTGGCCAATGGCAGCGCTGCTGAGCCCGCCAT GAGGAGGGGCTGGCCAATGGCATCGCTGCTGAGCCCGCCAT < 41bp 0.894525969375939 0.640491054080888 0.835803 0.34253448 prediction 0.508069830590103 Functional Loss - MCM2 ENSG00000073111 CDS Human protein_coding chr3:127337953 chr3:127337955 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_64016 0 0 1 0 1 MCM2 chr3:127337870 3'AG 127337870 Downstream 86bp
chr14 63747826 63747826 1 + C T rs35641601 63747824 + 63747804 63747844 41 AGCTCAAGGACTGCATGCCTCACGTGCCTTATGTCCTCATA AGCTCAAGGACTGCATGCCTCATGTGCCTTATGTCCTCATA < 41bp 0.754033205879259 0.481215990642478 0.050211787 0.04771918 prediction 0.508066411758519 Functional Loss - RHOJ ENSG00000126785 CDS Human protein_coding chr14:63747824 chr14:63747826 synonymous SNV . 0 23 hm5C_associated_SNPs_64017 0 0 0 0 1 RHOJ chr14:63747853 5'GT 63747853 Upstream 28bp
chr19 53879149 53879149 1 + G T LUSC 53879146 + 53879126 53879166 41 ATTATAGGAACCTGGTCTCCCTGGGTGAGGATAACTTCCCT ATTATAGGAACCTGGTCTCCCTGTGTGAGGATAACTTCCCT < 41bp 0.839087155543489 0.585074534425739 0.3794741 0.08651587 prediction 0.5080252422355 Functional Loss - ZNF525 ENSG00000203326 CDS Human protein_coding chr19:53879146 chr19:53879149 stopgain 0.293 1 24 hm5C_associated_SNPs_64021 0 0 0 2 1 ZNF525 chr19:53879149 5'GT 53879149 Upstream 1bp
chr14 78182137 78182137 1 + G T UCEC 78182135 + 78182115 78182155 41 GACAAGGAGACTGGCTTTCACAGAGGTTTGGGTTGGGTTCA GACAAGGAGACTGGCTTTCACATAGGTTTGGGTTGGGTTCA < 41bp 0.753974217816176 0.427072992420543 0.8875855 0.26224738 prediction 0.507948435632351 Functional Loss - SLIRP ENSG00000119705 CDS Human protein_coding chr14:78182135 chr14:78182137 stopgain 0.979 3 23 hm5C_associated_SNPs_64028 0 0 1 0 2 SLIRP chr14:78182115 3'AG 78182115 Downstream 23bp
chr14 78182137 78182137 1 + G T UCEC 78182135 + 78182115 78182155 41 GACAAGGAGACTGGCTTTCACAGAGGTTTGGGTTGGGTTCA GACAAGGAGACTGGCTTTCACATAGGTTTGGGTTGGGTTCA < 41bp 0.753974217816176 0.427072992420543 0.8875855 0.26224738 prediction 0.507948435632351 Functional Loss - SLIRP ENSG00000119705 CDS Human protein_coding chr14:78182135 chr14:78182137 stopgain 0.979 3 23 hm5C_associated_SNPs_64028 0 0 1 0 2 SLIRP chr14:78182222 5'GT 78182222 Upstream 86bp
chr6 144081763 144081763 1 + C T STAD 144081761 + 144081741 144081781 41 CCCAAGCCAGCAAGCCGAAACACGACCCGAGAGGCTGGTGA CCCAAGCCAGCAAGCCGAAACATGACCCGAGAGGCTGGTGA < 41bp 0.762269482566868 0.508300079086976 0.4095711 0.3782461 prediction 0.507938806959784 Functional Loss - PHACTR2 ENSG00000112419 CDS Human protein_coding chr6:144081761 chr6:144081763 nonsynonymous SNV 0.989 1 23 hm5C_associated_SNPs_64029 0 0 0 0 1 PHACTR2 chr6:144081777 5'GT 144081777 Upstream 15bp
chr10 51556792 51556792 1 + G C LUAD 51556788 + 51556768 51556808 41 GGAAACAAACACCCAATAAACTCGGAGTGGCAGACTGACAA GGAAACAAACACCCAATAAACTCGCAGTGGCAGACTGACAA < 41bp 0.78083678440244 0.52686765111078 0.34293717 0.25195837 prediction 0.507938266583319 Functional Loss - MSMB ENSG00000138294 CDS Human other chr10:51556788 chr10:51556792 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_64030 0 0 0 0 2 MSMB chr10:51556751 3'AG 51556751 Downstream 42bp
chr10 51556792 51556792 1 + G C LUAD 51556788 + 51556768 51556808 41 GGAAACAAACACCCAATAAACTCGGAGTGGCAGACTGACAA GGAAACAAACACCCAATAAACTCGCAGTGGCAGACTGACAA < 41bp 0.78083678440244 0.52686765111078 0.34293717 0.25195837 prediction 0.507938266583319 Functional Loss - MSMB ENSG00000138294 CDS Human other chr10:51556788 chr10:51556792 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_64030 0 0 0 0 2 MSMB chr10:51556856 5'GT 51556856 Upstream 65bp
chr1 166990920 166990920 1 + G T LUAD 166990917 + 166990897 166990937 41 TATCCTAGGTGACTACCCATCTAGGGCAAAAATTTCTGGCC TATCCTAGGTGACTACCCATCTATGGCAAAAATTTCTGGCC < 41bp 0.753965439247554 0.376061440505773 0.882192 0.4002894 prediction 0.507930878495109 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166990917 chr1:166990920 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_64031 0 0 0 1 1 MAEL chr1:166990905 3'AG 166990905 Downstream 16bp
chr13 75000493 75000493 1 + C T rs150063666 75000491 + 75000471 75000511 41 AGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGC AGATGGCCGAATAGGAACAGCTTCGGTCTACAGCTCCCAGC < 41bp 0.771081791072218 0.517121214363149 0.19598317 0.07255766 prediction 0.507921153418137 Functional Loss - LINC00381 ENSG00000226240 ncRNA_exonic Human lincRNA chr13:75000491 chr13:75000493 . . 0 23 hm5C_associated_SNPs_64033 0 0 0 0 1 LINC00381 chr13:75000555 5'GT 75000555 Upstream 63bp
chr9 34977167 34977167 1 + G C CESC 34977163 + 34977143 34977183 41 CGGGGCAGTGGGAGCACCGTCAGTGAGGCAGAGTGCCGCCG CGGGGCAGTGGGAGCACCGTCAGTCAGGCAGAGTGCCGCCG < 41bp 0.753958686266324 0.461665999715897 0.84616536 0.52186555 prediction 0.507917372532648 Functional Loss - PHF24 ENSG00000122733 CDS Human protein_coding chr9:34977163 chr9:34977167 nonsynonymous SNV 0.990 2 25 hm5C_associated_SNPs_64034 0 0 0 0 2 PHF24 chr9:34977080 3'AG 34977080 Downstream 88bp
chr9 34977167 34977167 1 + G C CESC 34977163 + 34977143 34977183 41 CGGGGCAGTGGGAGCACCGTCAGTGAGGCAGAGTGCCGCCG CGGGGCAGTGGGAGCACCGTCAGTCAGGCAGAGTGCCGCCG < 41bp 0.753958686266324 0.461665999715897 0.84616536 0.52186555 prediction 0.507917372532648 Functional Loss - PHF24 ENSG00000122733 CDS Human protein_coding chr9:34977163 chr9:34977167 nonsynonymous SNV 0.990 2 25 hm5C_associated_SNPs_64034 0 0 0 0 2 PHF24 chr9:34977240 5'GT 34977240 Upstream 74bp
chr9 101818644 101818644 1 + G T COAD 101818642 + 101818622 101818662 41 ACCTGGTGATCCTGGGCCACCGGGGCCCCCGGGGCCACCAG ACCTGGTGATCCTGGGCCACCGTGGCCCCCGGGGCCACCAG < 41bp 0.892816906888161 0.638866142667828 0.94745564 0.93125606 prediction 0.507901528440666 Functional Loss - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101818642 chr9:101818644 nonsynonymous SNV 0.835 5 23 hm5C_associated_SNPs_64035 0 0 0 0 1 COL15A1 chr9:101818686 5'GT 101818686 Upstream 43bp
chr19 54418632 54418632 1 + G T LUSC 54418629 + 54418609 54418649 41 CCCTCCCCAGAGACAGTGCGCACGGCCACCCCCTTCCCCAT CCCTCCCCAGAGACAGTGCGCACTGCCACCCCCTTCCCCAT < 41bp 0.753926386108974 0.343286239506972 0.8338925 0.15853447 prediction 0.507852772217947 Functional Loss - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54418629 chr19:54418632 synonymous SNV . 0 24 hm5C_associated_SNPs_64040 0 0 0 0 1 CACNG7 chr19:54418619 3'AG 54418619 Downstream 14bp
chr19 51831948 51831948 1 + G T UCEC 51831946 + 51831926 51831966 41 CCCAGGATCCCTGGAGAACTCAGCCCCGAGGCCCCCAGGGC CCCAGGATCCCTGGAGAACTCATCCCCGAGGCCCCCAGGGC < 41bp 0.753920544498726 0.41305964892256 0.2625388 0.3128422 prediction 0.507841088997453 Functional Loss - IGLON5 ENSG00000142549 CDS Human protein_coding chr19:51831946 chr19:51831948 nonsynonymous SNV 0.977 2 23 hm5C_associated_SNPs_64041 0 0 1 0 1 IGLON5 chr19:51831925 3'AG 51831925 Downstream 24bp
chr12 53682997 53682997 1 + G C LUAD 53682996 + 53682976 53683016 41 TGGCCTTGTGCCTGGGCCACCGGGATCCTTATGCCACTGCT TGGCCTTGTGCCTGGGCCACCCGGATCCTTATGCCACTGCT < 41bp 0.753917246707083 0.435754460761613 0.811537 0.5313941 prediction 0.507834493414165 Functional Loss - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53682996 chr12:53682997 nonsynonymous SNV 0.976 2 22 hm5C_associated_SNPs_64042 0 0 1 0 1 ESPL1 chr12:53683087 5'GT 53683087 Upstream 91bp
chr1 155152334 155152334 1 + G T SARC 155152332 + 155152312 155152352 41 ACACGGGCTCTGTGTATGTGCTGCGTGTCCGCGGCTGCAAC ACACGGGCTCTGTGTATGTGCTTCGTGTCCGCGGCTGCAAC < 41bp 0.753910214870057 0.429562660811296 0.091890365 0.057785183 prediction 0.507820429740113 Functional Loss - TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155152332 chr1:155152334 synonymous SNV . 0 23 hm5C_associated_SNPs_64045 0 0 0 0 1 TRIM46 chr1:155152410 5'GT 155152410 Upstream 77bp
chr5 128442739 128442739 1 + G T COAD 128442737 + 128442717 128442757 41 TCATCAAGAAGCATGATGGACAGGATGTTTGCCCTCGAGGT TCATCAAGAAGCATGATGGACATGATGTTTGCCCTCGAGGT < 41bp 0.876097419368371 0.622188383999494 0.2857933 0.05999744 prediction 0.507818070737754 Functional Loss - ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128442737 chr5:128442739 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_64046 0 0 1 0 1 ISOC1 chr5:128442755 5'GT 128442755 Upstream 17bp
chr14 52171541 52171541 1 + A T LUSC 52171537 + 52171517 52171557 41 TTCATTCTCAGTGTGTGCTCCGAGAGGAGGCCTACTTCCTG TTCATTCTCAGTGTGTGCTCCGAGTGGAGGCCTACTTCCTG < 41bp 0.753897747711969 0.456793566360952 0.92242277 0.88548 prediction 0.507795495423939 Functional Loss - FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52171537 chr14:52171541 nonsynonymous SNV 0.991 3 25 hm5C_associated_SNPs_64050 0 0 0 0 1 FRMD6 chr14:52171467 3'AG 52171467 Downstream 75bp
chrX 47040964 47040964 1 + C T STAD 47040962 + 47040942 47040982 41 TGTCGATGCAGGCTTTCTCTCGCGCCCAGCCTGGTGCTGCT TGTCGATGCAGGCTTTCTCTCGTGCCCAGCCTGGTGCTGCT < 41bp 0.754711478641433 0.500819264419377 0.8856449 0.8944487 prediction 0.507784428444112 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47040962 chrX:47040964 synonymous SNV . 0 23 hm5C_associated_SNPs_64051 0 0 1 0 2 RBM10 chrX:47040906 3'AG 47040906 Downstream 59bp
chrX 47040964 47040964 1 + C T STAD 47040962 + 47040942 47040982 41 TGTCGATGCAGGCTTTCTCTCGCGCCCAGCCTGGTGCTGCT TGTCGATGCAGGCTTTCTCTCGTGCCCAGCCTGGTGCTGCT < 41bp 0.754711478641433 0.500819264419377 0.8856449 0.8944487 prediction 0.507784428444112 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47040962 chrX:47040964 synonymous SNV . 0 23 hm5C_associated_SNPs_64051 0 0 1 0 2 RBM10 chrX:47041045 5'GT 47041045 Upstream 82bp
chr16 90102839 90102839 1 + G T LUAD 90102836 + 90102816 90102856 41 TGAAGATGCTGAGGGACGAACTCGACTTGCGGAGAAAGACT TGAAGATGCTGAGGGACGAACTCTACTTGCGGAGAAAGACT < 41bp 0.753881462314491 0.369960579554182 0.8920766 0.47694197 prediction 0.507762924628983 Functional Loss - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90102836 chr16:90102839 nonsynonymous SNV 0.963 4 24 hm5C_associated_SNPs_64052 0 0 1 1 1 GAS8 chr16:90102789 3'AG 90102789 Downstream 51bp
chr14 76965080 76965080 1 + G T LUSC 76965077 + 76965057 76965097 41 GACGGTGCGGAGGCCTGGGCCAGGGCTGACTCCCTTCAGGA GACGGTGCGGAGGCCTGGGCCAGTGCTGACTCCCTTCAGGA < 41bp 0.753881454239921 0.348234769636231 0.9358832 0.69902045 prediction 0.507762908479842 Functional Loss - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76965077 chr14:76965080 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_64053 0 0 1 0 1 ESRRB chr14:76965069 3'AG 76965069 Downstream 12bp
chr14 76965079 76965079 1 + G T LUSC 76965077 + 76965057 76965097 41 GACGGTGCGGAGGCCTGGGCCAGGGCTGACTCCCTTCAGGA GACGGTGCGGAGGCCTGGGCCATGGCTGACTCCCTTCAGGA < 41bp 0.753881454239921 0.396646631326833 0.9358832 0.4681787 prediction 0.507762908479842 Functional Loss - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76965077 chr14:76965079 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_64054 0 0 1 0 1 ESRRB chr14:76965069 3'AG 76965069 Downstream 11bp
chr2 37035677 37035677 1 + G T GBM 37035674 + 37035654 37035694 41 CAGAGCTGGTTTGGCCTCCACAAGACCCTGCAGCCTCTGGT CAGAGCTGGTTTGGCCTCCACAATACCCTGCAGCCTCTGGT < 41bp 0.753867403182304 0.362239443448808 0.0995284 0.070034534 prediction 0.507734806364608 Functional Loss - VIT ENSG00000205221 CDS Human protein_coding chr2:37035674 chr2:37035677 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_64056 0 0 0 0 1 VIT chr2:37035615 3'AG 37035615 Downstream 63bp
chr17 4858731 4858731 1 + G T STAD 4858728 + 4858708 4858748 41 AGCTGCTGAAGACGGCCATCCAGGCGGCTGGTTACCCAGAC AGCTGCTGAAGACGGCCATCCAGTCGGCTGGTTACCCAGAC < 41bp 0.753866282668812 0.349284558495388 0.8843744 0.2932922 prediction 0.507732565337623 Functional Loss - ENO3 ENSG00000108515 CDS Human protein_coding chr17:4858728 chr17:4858731 nonsynonymous SNV 0.797 1 24 hm5C_associated_SNPs_64058 0 0 1 0 1 ENO3 chr17:4858702 3'AG 4858702 Downstream 30bp
chr17 27187487 27187487 1 + G T UCEC 27187484 + 27187464 27187504 41 CCGAAGGGCCACGTGATCTCCCAGATAGCACAGGAGGCAGG CCGAAGGGCCACGTGATCTCCCATATAGCACAGGAGGCAGG < 41bp 0.75386448560701 0.377864178221737 0.0720782 0.025801986 prediction 0.50772897121402 Functional Loss - ERAL1 ENSG00000132591 CDS Human protein_coding chr17:27187484 chr17:27187487 nonsynonymous SNV 0.843 1 24 hm5C_associated_SNPs_64060 0 0 1 0 1 ERAL1 chr17:27187449 3'AG 27187449 Downstream 39bp
chr9 35846991 35846991 1 + C T BLCA 35846989 + 35846969 35847009 41 ACCTTCACCATGTTCTTCTCCACGGTATGCGGTGGTGTCTG ACCTTCACCATGTTCTTCTCCATGGTATGCGGTGGTGTCTG < 41bp 0.767365291683216 0.513501166796368 0.20066217 0.10230309 prediction 0.507728249773697 Functional Loss - TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35846989 chr9:35846991 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_64061 0 0 1 0 1 TMEM8B chr9:35846992 5'GT 35846992 Upstream 2bp
chr14 62536466 62536466 1 + G T UCEC 62536464 + 62536444 62536484 41 GAAAGCAGACAGGATTGGAGCAGAAACCAAAATTCAGCCGT GAAAGCAGACAGGATTGGAGCATAAACCAAAATTCAGCCGT < 41bp 0.753863597659171 0.408718217990659 0.25160587 0.061151415 prediction 0.507727195318343 Functional Loss - SYT16 ENSG00000139973 CDS Human protein_coding chr14:62536464 chr14:62536466 nonsynonymous SNV 0.697 0 23 hm5C_associated_SNPs_64063 0 0 0 0 1 SYT16 chr14:62536533 5'GT 62536533 Upstream 68bp
chr12 111885301 111885301 1 + C T STAD 111885299 + 111885279 111885319 41 CCTGGTGCGGCAGAGCGAGACGCGGCGTGGGGAATACGTGC CCTGGTGCGGCAGAGCGAGACGTGGCGTGGGGAATACGTGC < 41bp 0.772587636698644 0.518726529257333 0.8851507 0.8864759 prediction 0.507722214882622 Functional Loss - SH2B3 ENSG00000111252 CDS Human protein_coding chr12:111885299 chr12:111885301 nonsynonymous SNV 0.274 4 23 hm5C_associated_SNPs_64065 0 0 0 0 1 SH2B3 chr12:111885348 5'GT 111885348 Upstream 48bp
chr3 112998771 112998771 1 + C T STAD 112998769 + 112998749 112998789 41 TGGTGTCGGGCTACAGCGGTCGCGTGTACGAGAGGCCCGTG TGGTGTCGGGCTACAGCGGTCGTGTGTACGAGAGGCCCGTG < 41bp 0.771201865505057 0.517345721364388 0.9365419 0.93539405 prediction 0.507712288281337 Functional Loss - BOC ENSG00000144857 CDS Human protein_coding chr3:112998769 chr3:112998771 synonymous SNV . 0 23 hm5C_associated_SNPs_64066 0 0 0 0 1 BOC chr3:112998852 5'GT 112998852 Upstream 82bp
chr6 37250042 37250042 1 + C T SKCM 37250040 + 37250020 37250060 41 ATCCCCCTCGTTGCCCGGATCTCGGATCAGAACGCTTCTGG ATCCCCCTCGTTGCCCGGATCTTGGATCAGAACGCTTCTGG < 41bp 0.807480867240346 0.553626845776883 0.44969153 0.25929976 prediction 0.507708042926926 Functional Loss - TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37250040 chr6:37250042 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_64067 0 0 1 0 2 TBC1D22B chr6:37249961 3'AG 37249961 Downstream 82bp
chr6 37250042 37250042 1 + C T SKCM 37250040 + 37250020 37250060 41 ATCCCCCTCGTTGCCCGGATCTCGGATCAGAACGCTTCTGG ATCCCCCTCGTTGCCCGGATCTTGGATCAGAACGCTTCTGG < 41bp 0.807480867240346 0.553626845776883 0.44969153 0.25929976 prediction 0.507708042926926 Functional Loss - TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37250040 chr6:37250042 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_64067 0 0 1 0 2 TBC1D22B chr6:37250140 5'GT 37250140 Upstream 99bp
chr3 108403176 108403176 1 + T C DLBC 108403175 + 108403155 108403195 41 CGTCTCTGCAACTGGCCAACCTAGAGCCCCCCTGGTAAAAG CGTCTCTGCAACTGGCCAACCCAGAGCCCCCCTGGTAAAAG < 41bp 0.754903533614415 0.50105464887538 0.074322045 0.0711689 prediction 0.507697769478072 Functional Loss - DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108403175 chr3:108403176 synonymous SNV . 0 22 hm5C_associated_SNPs_64068 0 0 0 0 1 DZIP3 chr3:108403188 5'GT 108403188 Upstream 13bp
chr2 234368877 234368877 1 + A C LIHC 234368876 + 234368856 234368896 41 TGAAGTCCTGGGAAGACAAGCAGAAGTGCGAGCTGCCCCGC TGAAGTCCTGGGAAGACAAGCCGAAGTGCGAGCTGCCCCGC < 41bp 0.780996801846699 0.527153249776418 0.92153066 0.34323508 prediction 0.507687104140562 Functional Loss - DGKD ENSG00000077044 CDS Human protein_coding chr2:234368876 chr2:234368877 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_64069 0 0 1 0 1 DGKD chr2:234368840 3'AG 234368840 Downstream 38bp
chr20 56136665 56136665 1 + C T OV 56136663 + 56136643 56136683 41 AGATGGAGGAAGAGGGCATCCTCAGGCGGCTGAAGAAGTAT AGATGGAGGAAGAGGGCATCCTTAGGCGGCTGAAGAAGTAT < 41bp 0.769984455292532 0.516148855122382 0.2759927 0.7316943 prediction 0.507671200340298 Functional Loss - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56136663 chr20:56136665 synonymous SNV . 0 23 hm5C_associated_SNPs_64070 0 0 1 0 1 PCK1 chr20:56136691 5'GT 56136691 Upstream 27bp
chr2 233680442 233680442 1 + G T HNSC 233680440 + 233680420 233680460 41 GCAGCTAGAGAAGGCCAAAGCTGCAAAGGTCTGAAACTCAT GCAGCTAGAGAAGGCCAAAGCTTCAAAGGTCTGAAACTCAT < 41bp 0.753834493712516 0.448794501594168 0.27024138 0.17617232 prediction 0.507668987425031 Functional Loss - GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233680440 chr2:233680442 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_64071 0 0 1 0 2 GIGYF2 chr2:233680347 3'AG 233680347 Downstream 96bp
chr2 233680442 233680442 1 + G T HNSC 233680440 + 233680420 233680460 41 GCAGCTAGAGAAGGCCAAAGCTGCAAAGGTCTGAAACTCAT GCAGCTAGAGAAGGCCAAAGCTTCAAAGGTCTGAAACTCAT < 41bp 0.753834493712516 0.448794501594168 0.27024138 0.17617232 prediction 0.507668987425031 Functional Loss - GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233680440 chr2:233680442 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_64071 0 0 1 0 2 GIGYF2 chr2:233680447 5'GT 233680447 Upstream 6bp
chr3 41280713 41280713 1 + C T LUSC 41280711 + 41280691 41280731 41 TGGAACATGAGATGGGTGGCCACCACCCTGGTGCTGACTAT TGGAACATGAGATGGGTGGCCATCACCCTGGTGCTGACTAT < 41bp 0.808450614712116 0.554618818199057 0.16076896 0.23428744 prediction 0.507663593026118 Functional Loss - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41280711 chr3:41280713 synonymous SNV . 0 23 hm5C_associated_SNPs_64072 0 0 1 0 1 CTNNB1 chr3:41280625 3'AG 41280625 Downstream 89bp
chr12 111342522 111342522 1 + C T rs115334501 111342520 + 111342500 111342540 41 TCTGGGGTGGCTCTGCCCTCCTCAAGCCCCCAGAACCCATC TCTGGGGTGGCTCTGCCCTCCTTAAGCCCCCAGAACCCATC < 41bp 0.817821945175216 0.563993983445269 0.1431436 0.028946787 prediction 0.507655923459895 Functional Loss - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111342520 chr12:111342522 synonymous SNV . 0 23 hm5C_associated_SNPs_64073 0 0 0 0 1 CCDC63 chr12:111342595 5'GT 111342595 Upstream 74bp
chr11 43904227 43904227 1 + C T ESCA 43904225 + 43904205 43904245 41 GGAGGAAAAAAGACGGCGAGCCCGAGTTCAGGGAGCCTGGG GGAGGAAAAAAGACGGCGAGCCTGAGTTCAGGGAGCCTGGG < 41bp 0.78834863974038 0.534528045624226 0.20024928 0.21329093 prediction 0.507641188232308 Functional Loss - ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43904225 chr11:43904227 stopgain 0.993 1 23 hm5C_associated_SNPs_64077 0 0 1 0 1 ALKBH3 chr11:43904133 3'AG 43904133 Downstream 95bp
chr2 238978060 238978060 1 + G T LUSC 238978057 + 238978037 238978077 41 AAGCCCCATTTCATTACTTCCTCGGTGGAACACGACTCCAT AAGCCCCATTTCATTACTTCCTCTGTGGAACACGACTCCAT < 41bp 0.753815023544007 0.368059631319366 0.24344596 0.12928039 prediction 0.507630047088015 Functional Loss - SCLY ENSG00000132330 CDS Human protein_coding chr2:238978057 chr2:238978060 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_64078 0 0 1 0 1 SCLY chr2:238978118 5'GT 238978118 Upstream 59bp
chr1 84864322 84864322 1 + G T LUAD 84864320 + 84864300 84864340 41 TCCTTGGCCTCTTTGGGGTGCTGGGGGCAGCAACAATTTCA TCCTTGGCCTCTTTGGGGTGCTTGGGGCAGCAACAATTTCA < 41bp 0.753808241106793 0.413036389827232 0.86456406 0.87426114 prediction 0.507616482213586 Functional Loss - DNASE2B ENSG00000137976 CDS Human protein_coding chr1:84864320 chr1:84864322 synonymous SNV . 0 23 hm5C_associated_SNPs_64079 0 0 0 0 1 DNASE2B chr1:84864372 5'GT 84864372 Upstream 51bp
chr8 145161313 145161313 1 + A C STAD 145161312 + 145161292 145161332 41 ACTTCAAGGATCTGAAACCACAGCTGTGGAACGCGGTGGAC ACTTCAAGGATCTGAAACCACCGCTGTGGAACGCGGTGGAC < 41bp 0.765357930596908 0.51155072027456 0.3909058 0.20307603 prediction 0.507614420644696 Functional Loss - MAF1 ENSG00000179632 CDS Human protein_coding chr8:145161312 chr8:145161313 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_64080 0 0 1 0 2 MAF1 chr8:145161246 3'AG 145161246 Downstream 68bp
chr8 145161313 145161313 1 + A C STAD 145161312 + 145161292 145161332 41 ACTTCAAGGATCTGAAACCACAGCTGTGGAACGCGGTGGAC ACTTCAAGGATCTGAAACCACCGCTGTGGAACGCGGTGGAC < 41bp 0.765357930596908 0.51155072027456 0.3909058 0.20307603 prediction 0.507614420644696 Functional Loss - MAF1 ENSG00000179632 CDS Human protein_coding chr8:145161312 chr8:145161313 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_64080 0 0 1 0 2 MAF1 chr8:145161367 5'GT 145161367 Upstream 55bp
chr12 9070294 9070294 1 + G T UCEC 9070292 + 9070272 9070312 41 TCATGGAGACTGAGAGCGAGCAGAACTCCAATTCCACCAAT TCATGGAGACTGAGAGCGAGCATAACTCCAATTCCACCAAT < 41bp 0.753804660092987 0.409819774645205 0.32807207 0.19813591 prediction 0.507609320185974 Functional Loss - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9070292 chr12:9070294 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_64081 0 0 1 0 2 PHC1 chr12:9070226 3'AG 9070226 Downstream 69bp
chr12 9070294 9070294 1 + G T UCEC 9070292 + 9070272 9070312 41 TCATGGAGACTGAGAGCGAGCAGAACTCCAATTCCACCAAT TCATGGAGACTGAGAGCGAGCATAACTCCAATTCCACCAAT < 41bp 0.753804660092987 0.409819774645205 0.32807207 0.19813591 prediction 0.507609320185974 Functional Loss - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9070292 chr12:9070294 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_64081 0 0 1 0 2 PHC1 chr12:9070387 5'GT 9070387 Upstream 94bp
chr22 21377624 21377624 1 + A T rs142683110 21377620 + 21377600 21377640 41 TAAGCACTGCCGCTATGAACCACAATTCAGCCCCTACTGTC TAAGCACTGCCGCTATGAACCACATTTCAGCCCCTACTGTC < 41bp 0.753798870301452 0.430489156444008 0.033196896 0.059182435 prediction 0.507597740602903 Functional Loss - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21377620 chr22:21377624 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_64082 0 0 0 0 2 P2RX6 chr22:21377564 3'AG 21377564 Downstream 61bp
chr22 21377624 21377624 1 + A T rs142683110 21377620 + 21377600 21377640 41 TAAGCACTGCCGCTATGAACCACAATTCAGCCCCTACTGTC TAAGCACTGCCGCTATGAACCACATTTCAGCCCCTACTGTC < 41bp 0.753798870301452 0.430489156444008 0.033196896 0.059182435 prediction 0.507597740602903 Functional Loss - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21377620 chr22:21377624 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_64082 0 0 0 0 2 P2RX6 chr22:21377705 5'GT 21377705 Upstream 82bp
chr19 54606463 54606463 1 + G T UCEC 54606461 + 54606441 54606481 41 GAATGCCTGGGACAAGGAGCCAGTGCTGGTCGTGTCCTTCG GAATGCCTGGGACAAGGAGCCATTGCTGGTCGTGTCCTTCG < 41bp 0.753798272391418 0.404242041237106 0.44755733 0.22871816 prediction 0.507596544782836 Functional Loss - NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54606461 chr19:54606463 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_64083 0 0 1 1 2 NDUFA3 chr19:54606422 3'AG 54606422 Downstream 42bp
chr19 54606463 54606463 1 + G T UCEC 54606461 + 54606441 54606481 41 GAATGCCTGGGACAAGGAGCCAGTGCTGGTCGTGTCCTTCG GAATGCCTGGGACAAGGAGCCATTGCTGGTCGTGTCCTTCG < 41bp 0.753798272391418 0.404242041237106 0.44755733 0.22871816 prediction 0.507596544782836 Functional Loss - NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54606461 chr19:54606463 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_64083 0 0 1 1 2 NDUFA3 chr19:54606496 5'GT 54606496 Upstream 34bp
chr20 44640922 44640922 1 + G C SKCM 44640918 + 44640898 44640938 41 GCTACCACCTCGAACTTTGACAGCGACAAGAAGTGGGGCTT GCTACCACCTCGAACTTTGACAGCCACAAGAAGTGGGGCTT < 41bp 0.753791839752968 0.469912466576904 0.8918066 0.8288554 prediction 0.507583679505936 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44640918 chr20:44640922 nonsynonymous SNV 0.803 4 25 hm5C_associated_SNPs_64085 0 0 0 0 1 MMP9 chr20:44640952 5'GT 44640952 Upstream 31bp
chr20 29628283 29628283 1 + G C BLCA 29628279 + 29628259 29628299 41 CTTTATTAGATGCAATGAAGCAGGGGACATAGAAGCAAAAA CTTTATTAGATGCAATGAAGCAGGCGACATAGAAGCAAAAA < 41bp 0.753787855441794 0.481155453495947 0.92015815 0.8621941 prediction 0.507575710883589 Functional Loss - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29628279 chr20:29628283 synonymous SNV . 0 25 hm5C_associated_SNPs_64086 0 0 0 1 2 FRG1BP;FRG1DP chr20:29628227 3'AG 29628227 Downstream 57bp
chr20 29628283 29628283 1 + G C BLCA 29628279 + 29628259 29628299 41 CTTTATTAGATGCAATGAAGCAGGGGACATAGAAGCAAAAA CTTTATTAGATGCAATGAAGCAGGCGACATAGAAGCAAAAA < 41bp 0.753787855441794 0.481155453495947 0.92015815 0.8621941 prediction 0.507575710883589 Functional Loss - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29628279 chr20:29628283 synonymous SNV . 0 25 hm5C_associated_SNPs_64086 0 0 0 1 2 FRG1BP;FRG1DP chr20:29628331 5'GT 29628331 Upstream 49bp
chr19 2810443 2810443 1 + C T COAD 2810441 + 2810421 2810461 41 CCGCACAGGCAGCGCCGTGCCCCGGGAGCTCCTGGAGAAGC CCGCACAGGCAGCGCCGTGCCCTGGGAGCTCCTGGAGAAGC < 41bp 0.765903760928351 0.512123274818287 0.07004157 0.055924863 prediction 0.507560972220128 Functional Loss - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2810441 chr19:2810443 nonsynonymous SNV 0.045 2 23 hm5C_associated_SNPs_64088 0 0 1 0 1 THOP1 chr19:2810488 5'GT 2810488 Upstream 46bp
chr2 209167032 209167032 1 + C T COAD 209167030 + 209167010 209167050 41 GGCTGGATTGTGTTAGTCATCACGACCAGCTTTTCAGAGAT GGCTGGATTGTGTTAGTCATCATGACCAGCTTTTCAGAGAT < 41bp 0.805719082055007 0.551939871940693 0.26126978 0.1962964 prediction 0.507558420228627 Functional Loss - PIKFYVE ENSG00000115020 CDS Human protein_coding chr2:209167030 chr2:209167032 synonymous SNV . 0 23 hm5C_associated_SNPs_64089 0 0 1 0 2 PIKFYVE chr2:209166966 3'AG 209166966 Downstream 67bp
chr2 209167032 209167032 1 + C T COAD 209167030 + 209167010 209167050 41 GGCTGGATTGTGTTAGTCATCACGACCAGCTTTTCAGAGAT GGCTGGATTGTGTTAGTCATCATGACCAGCTTTTCAGAGAT < 41bp 0.805719082055007 0.551939871940693 0.26126978 0.1962964 prediction 0.507558420228627 Functional Loss - PIKFYVE ENSG00000115020 CDS Human protein_coding chr2:209167030 chr2:209167032 synonymous SNV . 0 23 hm5C_associated_SNPs_64089 0 0 1 0 2 PIKFYVE chr2:209167077 5'GT 209167077 Upstream 46bp
chr7 91570445 91570445 1 + A T STAD 91570441 + 91570421 91570461 41 ACGAGGAGAGACAGAAGAAGCTGGAGGCCGGCAAAGCCAAG ACGAGGAGAGACAGAAGAAGCTGGTGGCCGGCAAAGCCAAG < 41bp 0.757753698738268 0.503987063191776 0.4087186 0.35981432 prediction 0.507533271092984 Functional Loss - AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91570441 chr7:91570445 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_64091 0 0 1 0 1 AKAP9 chr7:91570461 5'GT 91570461 Upstream 17bp
chr1 154962880 154962880 1 + G T LUAD 154962877 + 154962857 154962897 41 GGCCCTGGGTGAACTGCAGGCACGGCACCCCCAGCTGGAGG GGCCCTGGGTGAACTGCAGGCACTGCACCCCCAGCTGGAGG < 41bp 0.913105212057022 0.659345223511754 0.12719843 0.07546386 prediction 0.507519977090537 Functional Loss - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962877 chr1:154962880 nonsynonymous SNV 0.828 0 24 hm5C_associated_SNPs_64093 0 0 1 0 1 FLAD1 chr1:154962815 3'AG 154962815 Downstream 66bp
chr16 28847370 28847370 1 + G T BLCA 28847367 + 28847347 28847387 41 CATGGGGGGCCCCCCCAAGGCGCGGTGCCCCAGAGTGGGGT CATGGGGGGCCCCCCCAAGGCGCTGTGCCCCAGAGTGGGGT < 41bp 0.902048620635421 0.648290394404688 0.3678686 0.12652728 prediction 0.507516452461465 Functional Loss - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28847367 chr16:28847370 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_64094 0 0 1 0 1 ATXN2L chr16:28847443 5'GT 28847443 Upstream 74bp
chr1 57320623 57320623 1 + G T LUAD 57320621 + 57320601 57320641 41 GTCTTTGATGACTTGTCAGCCTGGGGTAACTGCACAGGAGA GTCTTTGATGACTTGTCAGCCTTGGGTAACTGCACAGGAGA < 41bp 0.753752797747551 0.421834893939703 0.9083662 0.2866149 prediction 0.507505595495102 Functional Loss - C8A ENSG00000157131 CDS Human protein_coding chr1:57320621 chr1:57320623 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_64095 0 0 0 0 1 C8A chr1:57320651 5'GT 57320651 Upstream 29bp
chr14 24846882 24846882 1 + G T LAML 24846880 + 24846860 24846900 41 CCGAGACCTGAGTGGCTTCCCTGCACCTCCTGGAGAAGAGC CCGAGACCTGAGTGGCTTCCCTTCACCTCCTGGAGAAGAGC < 41bp 0.753752683535751 0.476228225588012 0.18926004 0.07643363 prediction 0.507505367071502 Functional Loss - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24846880 chr14:24846882 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_64096 0 0 1 0 1 NFATC4 chr14:24846844 3'AG 24846844 Downstream 39bp
chr17 7983170 7983170 1 + G T LUSC 7983168 + 7983148 7983188 41 ACGGGGAACTTGTCTGGGATCCGCGTGCAGCGGCGGATCAG ACGGGGAACTTGTCTGGGATCCTCGTGCAGCGGCGGATCAG < 41bp 0.753747857390289 0.413274816745375 0.8998731 0.37965736 prediction 0.507495714780579 Functional Loss - ALOX12B ENSG00000179477 CDS Human protein_coding chr17:7983168 chr17:7983170 synonymous SNV . 0 23 hm5C_associated_SNPs_64097 0 0 0 0 1 ALOX12B chr17:7983123 3'AG 7983123 Downstream 48bp
chr3 188956624 188956624 1 + G T LUSC 188956622 + 188956602 188956642 41 TCATGCTGAGTTGTGTGCAGCTGCAGCGGATTCCTCTGAGC TCATGCTGAGTTGTGTGCAGCTTCAGCGGATTCCTCTGAGC < 41bp 0.753747483733537 0.4250579806347 0.31620365 0.26471603 prediction 0.507494967467074 Functional Loss - TPRG1 ENSG00000188001 CDS Human protein_coding chr3:188956622 chr3:188956624 synonymous SNV . 0 23 hm5C_associated_SNPs_64098 0 0 0 0 1 TPRG1 chr3:188956698 5'GT 188956698 Upstream 75bp
chr14 100842813 100842813 1 + G C rs562483045 100842809 + 100842789 100842829 41 TAGTGTGCTGGCCGGTCTGCCTCCGGGAGAACCGAGCGCTT TAGTGTGCTGGCCGGTCTGCCTCCCGGAGAACCGAGCGCTT < 41bp 0.753746426471944 0.477230424105379 0.3628298 0.24441329 prediction 0.507492852943888 Functional Loss - WDR25 ENSG00000140105;ENSG00000176473 UTR5 Human other chr14:100842809 chr14:100842813 . . 0 25 hm5C_associated_SNPs_64099 0 0 0 0 1 WDR25 chr14:100842841 5'GT 100842841 Upstream 29bp
chr2 70015273 70015273 1 + G T LUSC 70015270 + 70015250 70015290 41 TGAGGAAGGCCATGAAAGGGCTCGGTATGTGTCCTGCTGGA TGAGGAAGGCCATGAAAGGGCTCTGTATGTGTCCTGCTGGA < 41bp 0.753739738058698 0.37216990297474 0.13584256 0.08235678 prediction 0.507479476117397 Functional Loss - ANXA4 ENSG00000196975 CDS Human protein_coding chr2:70015270 chr2:70015273 nonsynonymous SNV 0.112 4 24 hm5C_associated_SNPs_64100 0 0 1 1 2 ANXA4 chr2:70015186 3'AG 70015186 Downstream 88bp
chr2 70015273 70015273 1 + G T LUSC 70015270 + 70015250 70015290 41 TGAGGAAGGCCATGAAAGGGCTCGGTATGTGTCCTGCTGGA TGAGGAAGGCCATGAAAGGGCTCTGTATGTGTCCTGCTGGA < 41bp 0.753739738058698 0.37216990297474 0.13584256 0.08235678 prediction 0.507479476117397 Functional Loss - ANXA4 ENSG00000196975 CDS Human protein_coding chr2:70015270 chr2:70015273 nonsynonymous SNV 0.112 4 24 hm5C_associated_SNPs_64100 0 0 1 1 2 ANXA4 chr2:70015273 5'GT 70015273 Upstream 1bp
chr6 26506926 26506926 1 + G T COAD 26506923 + 26506903 26506943 41 TGTTTTAGCTTCCTCCCTCCCAAGGCTGACTCCCTGGATAG TGTTTTAGCTTCCTCCCTCCCAATGCTGACTCCCTGGATAG < 41bp 0.753730466611145 0.354338065604499 0.9049139 0.102899075 prediction 0.507460933222289 Functional Loss - BTN1A1 ENSG00000124557 CDS Human protein_coding chr6:26506923 chr6:26506926 nonsynonymous SNV 0.010 1 24 hm5C_associated_SNPs_64103 0 0 0 0 1 BTN1A1 chr6:26506911 3'AG 26506911 Downstream 16bp
chr6 168291648 168291648 1 + G T OV 168291645 + 168291625 168291665 41 AAGGGAAAGGAGAGAGCTGACGGGTCTGGCTATGGCTCCAC AAGGGAAAGGAGAGAGCTGACGGTTCTGGCTATGGCTCCAC < 41bp 0.753712690483327 0.372359646857692 0.83108735 0.2102339 prediction 0.507425380966654 Functional Loss - AFDN ENSG00000130396 CDS Human protein_coding chr6:168291645 chr6:168291648 synonymous SNV . 0 24 hm5C_associated_SNPs_64106 0 0 1 0 1 AFDN chr6:168291709 5'GT 168291709 Upstream 62bp
chr22 44532374 44532374 1 + C T BLCA 44532372 + 44532352 44532392 41 CTGCTGCATTCCAGCCACATCTCGGAGGAGCTGACCACAAC CTGCTGCATTCCAGCCACATCTTGGAGGAGCTGACCACAAC < 41bp 0.753711121201308 0.467292390198108 0.4901869 0.3721915 prediction 0.507422242402616 Functional Loss - PARVB ENSG00000188677 CDS Human protein_coding chr22:44532372 chr22:44532374 nonsynonymous SNV 0.622 1 23 hm5C_associated_SNPs_64108 0 0 0 0 1 PARVB chr22:44532340 3'AG 44532340 Downstream 35bp
chr21 47918713 47918713 1 + G T SARC 47918711 + 47918691 47918731 41 GCCGGGGGCCGCCGCTACCACTGCACTCGCAGGCCTCGAGG GCCGGGGGCCGCCGCTACCACTTCACTCGCAGGCCTCGAGG < 41bp 0.868048257865442 0.614339851579682 0.23324373 0.17091855 prediction 0.50741681257152 Functional Loss - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47918711 chr21:47918713 nonsynonymous SNV 0.012 0 23 hm5C_associated_SNPs_64109 0 0 1 0 1 DIP2A chr21:47918746 5'GT 47918746 Upstream 34bp
chr18 28986080 28986080 1 + A C UCEC 28986079 + 28986059 28986099 41 GGCTAAGCAGGTTTTATCTCCAGGATTTTATGAAATCCCAA GGCTAAGCAGGTTTTATCTCCCGGATTTTATGAAATCCCAA < 41bp 0.758168355378639 0.504463488234443 0.37589163 0.42347023 prediction 0.507409734288392 Functional Loss - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28986079 chr18:28986080 synonymous SNV . 0 22 hm5C_associated_SNPs_64110 0 0 0 0 1 DSG4 chr18:28986040 3'AG 28986040 Downstream 41bp
chr22 50649279 50649279 1 + G T COAD 50649277 + 50649257 50649297 41 GCAGGAAGCTGGGCCTCGTGCAGGTGGAGCTGGAGGAAGAC GCAGGAAGCTGGGCCTCGTGCATGTGGAGCTGGAGGAAGAC < 41bp 0.753703267007355 0.401261990536222 0.667686 0.22528306 prediction 0.507406534014711 Functional Loss - SELENOO ENSG00000073169 CDS Human protein_coding chr22:50649277 chr22:50649279 unknown 0.000 0 23 hm5C_associated_SNPs_64112 0 0 0 0 1 SELENOO chr22:50649340 5'GT 50649340 Upstream 62bp
chr18 56348505 56348505 1 + G T UCEC 56348503 + 56348483 56348523 41 TGAAAAAGGTTGCACAGTCACAGAATTGAGTGATTTCCTGC TGAAAAAGGTTGCACAGTCACATAATTGAGTGATTTCCTGC < 41bp 0.880571695801201 0.626875954873118 0.616681 0.5341495 prediction 0.507391481856168 Functional Loss - MALT1 ENSG00000172175 CDS Human protein_coding chr18:56348503 chr18:56348505 stopgain 0.990 0 23 hm5C_associated_SNPs_64114 0 0 1 0 1 MALT1 chr18:56348568 5'GT 56348568 Upstream 64bp
chr1 18688620 18688620 1 + T C LUSC 18688619 + 18688599 18688639 41 TTTGGGGCAGCTCCTCCCACCTCCATTGAAGTGGTGGCTGC TTTGGGGCAGCTCCTCCCACCCCCATTGAAGTGGTGGCTGC < 41bp 0.786430432589705 0.532736236065288 0.97265285 0.02955708 prediction 0.507388393048835 Functional Loss - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18688619 chr1:18688620 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_64115 0 0 0 0 1 IGSF21 chr1:18688609 3'AG 18688609 Downstream 12bp
chr6 42986281 42986281 1 + G T LUAD 42986278 + 42986258 42986298 41 CCAGTGCTGCCTGAGGGGCGCCGGAGCCACTCGGCCTGTGA CCAGTGCTGCCTGAGGGGCGCCGTAGCCACTCGGCCTGTGA < 41bp 0.753692736612118 0.35040806607591 0.93467844 0.6414513 prediction 0.507385473224237 Functional Loss - KLHDC3 ENSG00000124702 CDS Human protein_coding chr6:42986278 chr6:42986281 synonymous SNV . 0 24 hm5C_associated_SNPs_64116 0 0 0 0 1 KLHDC3 chr6:42986294 5'GT 42986294 Upstream 14bp
chr19 44513029 44513029 1 + G T UCEC 44513026 + 44513006 44513046 41 CTGCCCAGAGGAAGCTGTACCAAGACGTGATGCTTGAGAAC CTGCCCAGAGGAAGCTGTACCAATACGTGATGCTTGAGAAC < 41bp 0.912565669072943 0.658873716246132 0.48200122 0.07202086 prediction 0.507383905653622 Functional Loss - ZNF230 ENSG00000159882 CDS Human protein_coding chr19:44513026 chr19:44513029 nonsynonymous SNV 0.054 3 24 hm5C_associated_SNPs_64117 0 0 0 0 2 ZNF230 chr19:44512942 3'AG 44512942 Downstream 88bp
chr19 44513029 44513029 1 + G T UCEC 44513026 + 44513006 44513046 41 CTGCCCAGAGGAAGCTGTACCAAGACGTGATGCTTGAGAAC CTGCCCAGAGGAAGCTGTACCAATACGTGATGCTTGAGAAC < 41bp 0.912565669072943 0.658873716246132 0.48200122 0.07202086 prediction 0.507383905653622 Functional Loss - ZNF230 ENSG00000159882 CDS Human protein_coding chr19:44513026 chr19:44513029 nonsynonymous SNV 0.054 3 24 hm5C_associated_SNPs_64117 0 0 0 0 2 ZNF230 chr19:44513068 5'GT 44513068 Upstream 40bp
chr5 149412103 149412103 1 + A C rs149432121 149412099 + 149412079 149412119 41 CTACACCAACAGGCACAAACCTCGAATTTGTCCCAGCTGTG CTACACCAACAGGCACAAACCTCGCATTTGTCCCAGCTGTG < 41bp 0.753690599681368 0.317242476184566 0.8092682 0.29955128 prediction 0.507381199362736 Functional Loss - HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149412099 chr5:149412103 synonymous SNV . 0 25 hm5C_associated_SNPs_64118 0 0 0 0 2 HMGXB3 chr5:149412017 3'AG 149412017 Downstream 87bp
chr5 149412103 149412103 1 + A C rs149432121 149412099 + 149412079 149412119 41 CTACACCAACAGGCACAAACCTCGAATTTGTCCCAGCTGTG CTACACCAACAGGCACAAACCTCGCATTTGTCCCAGCTGTG < 41bp 0.753690599681368 0.317242476184566 0.8092682 0.29955128 prediction 0.507381199362736 Functional Loss - HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149412099 chr5:149412103 synonymous SNV . 0 25 hm5C_associated_SNPs_64118 0 0 0 0 2 HMGXB3 chr5:149412166 5'GT 149412166 Upstream 64bp
chr17 27015135 27015135 1 + C T UCEC 27015133 + 27015113 27015153 41 TGAAGCAGAACAACACCCGGCTCGAGAGCCGGACCCAGCTG TGAAGCAGAACAACACCCGGCTTGAGAGCCGGACCCAGCTG < 41bp 0.753689280588331 0.467233395717111 0.34329057 0.27539653 prediction 0.507378561176661 Functional Loss - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27015133 chr17:27015135 synonymous SNV . 0 23 hm5C_associated_SNPs_64119 0 0 1 0 1 SUPT6H chr17:27015109 3'AG 27015109 Downstream 27bp
chr6 74116144 74116144 1 + G T STAD 74116142 + 74116122 74116162 41 TCTTATAGGAGTAGCCCAGACTGGAACAGGAAAGACATTGT TCTTATAGGAGTAGCCCAGACTTGAACAGGAAAGACATTGT < 41bp 0.873102205846732 0.619423539766653 0.059939355 0.043441564 prediction 0.507357332160158 Functional Loss - DDX43 ENSG00000080007 CDS Human protein_coding chr6:74116142 chr6:74116144 stopgain 0.967 1 23 hm5C_associated_SNPs_64121 0 0 0 0 2 DDX43 chr6:74116087 3'AG 74116087 Downstream 58bp
chr6 74116144 74116144 1 + G T STAD 74116142 + 74116122 74116162 41 TCTTATAGGAGTAGCCCAGACTGGAACAGGAAAGACATTGT TCTTATAGGAGTAGCCCAGACTTGAACAGGAAAGACATTGT < 41bp 0.873102205846732 0.619423539766653 0.059939355 0.043441564 prediction 0.507357332160158 Functional Loss - DDX43 ENSG00000080007 CDS Human protein_coding chr6:74116142 chr6:74116144 stopgain 0.967 1 23 hm5C_associated_SNPs_64121 0 0 0 0 2 DDX43 chr6:74116205 5'GT 74116205 Upstream 62bp
chr5 43246079 43246079 1 + G T READ 43246076 + 43246056 43246096 41 AGGTGGTGAGGGAGATCACGCTGGGGAAACGGATAGGCTTC AGGTGGTGAGGGAGATCACGCTGTGGAAACGGATAGGCTTC < 41bp 0.915313881807144 0.661643347629917 0.9047792 0.49963623 prediction 0.507341068354453 Functional Loss - NIM1K ENSG00000177453 CDS Human protein_coding chr5:43246076 chr5:43246079 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_64122 0 0 0 0 1 NIM1K chr5:43246169 5'GT 43246169 Upstream 91bp
chr10 135165539 135165539 1 + C T rs145387630 135165537 + 135165517 135165557 41 GGGCGCCCGTGTGGTGGAGCCTCCGGAGAAGGACGACCAGC GGGCGCCCGTGTGGTGGAGCCTTCGGAGAAGGACGACCAGC < 41bp 0.7759616678978 0.522299544456591 0.7968328 0.75486267 prediction 0.507324246882418 Functional Loss - PRAP1 ENSG00000165828;ENSG00000198546 CDS Human protein_coding chr10:135165537 chr10:135165539 nonsynonymous SNV 0.004 1 23 hm5C_associated_SNPs_64124 0 0 1 0 3 PRAP1 chr10:135165508 3'AG 135165508 Downstream 32bp
chr10 135165539 135165539 1 + C T rs145387630 135165537 + 135165517 135165557 41 GGGCGCCCGTGTGGTGGAGCCTCCGGAGAAGGACGACCAGC GGGCGCCCGTGTGGTGGAGCCTTCGGAGAAGGACGACCAGC < 41bp 0.7759616678978 0.522299544456591 0.7968328 0.75486267 prediction 0.507324246882418 Functional Loss - PRAP1 ENSG00000165828;ENSG00000198546 CDS Human other chr10:135165537 chr10:135165539 nonsynonymous SNV 0.004 1 23 hm5C_associated_SNPs_64124 0 0 1 0 3 PRAP1 chr10:135165511 3'AG 135165511 Downstream 29bp
chr10 135165539 135165539 1 + C T rs145387630 135165537 + 135165517 135165557 41 GGGCGCCCGTGTGGTGGAGCCTCCGGAGAAGGACGACCAGC GGGCGCCCGTGTGGTGGAGCCTTCGGAGAAGGACGACCAGC < 41bp 0.7759616678978 0.522299544456591 0.7968328 0.75486267 prediction 0.507324246882418 Functional Loss - PRAP1 ENSG00000165828;ENSG00000198546 CDS Human other chr10:135165537 chr10:135165539 nonsynonymous SNV 0.004 1 23 hm5C_associated_SNPs_64124 0 0 1 0 3 PRAP1 chr10:135165617 5'GT 135165617 Upstream 79bp
chr6 41621154 41621154 1 + G C BLCA 41621153 + 41621133 41621173 41 CACCTGTGGCTCCTGCAGCTCGGAGGACTCGTGCCTCTGCT CACCTGTGGCTCCTGCAGCTCCGAGGACTCGTGCCTCTGCT < 41bp 0.753660160875989 0.434301098278303 0.903088 0.40805215 prediction 0.507320321751978 Functional Loss - MDFI ENSG00000112559 CDS Human protein_coding chr6:41621153 chr6:41621154 synonymous SNV . 0 22 hm5C_associated_SNPs_64125 0 0 0 0 1 MDFI chr6:41621057 3'AG 41621057 Downstream 98bp
chr7 141408808 141408808 1 + C T BLCA 141408806 + 141408786 141408826 41 TCCAGATCAGATTTTGAGGACTCCAGTGTCACACCCTCTCA TCCAGATCAGATTTTGAGGACTTCAGTGTCACACCCTCTCA < 41bp 0.771151787576609 0.517504517344872 0.92113113 0.2124832 prediction 0.507294540463474 Functional Loss - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141408806 chr7:141408808 nonsynonymous SNV 0.025 0 23 hm5C_associated_SNPs_64126 0 0 0 0 1 WEE2 chr7:141408900 5'GT 141408900 Upstream 93bp
chr2 176973654 176973654 1 + G T SKCM 176973652 + 176973632 176973672 41 CAGTTGCCCCCCAGCGGTCCCGGAAAAAGCGCTGTCCCTAT CAGTTGCCCCCCAGCGGTCCCGTAAAAAGCGCTGTCCCTAT < 41bp 0.753642977509811 0.424918576029903 0.7922407 0.1779382 prediction 0.507285955019623 Functional Loss - HOXD11 ENSG00000128713 CDS Human protein_coding chr2:176973652 chr2:176973654 synonymous SNV . 0 23 hm5C_associated_SNPs_64127 0 0 1 0 1 HOXD11 chr2:176973635 3'AG 176973635 Downstream 20bp
chrX 140993218 140993218 1 + G T LUAD 140993216 + 140993196 140993236 41 GGACAAGGATATGCCTACTGCTGGGATGCCGAGTCTTCTCC GGACAAGGATATGCCTACTGCTTGGATGCCGAGTCTTCTCC < 41bp 0.88326942426425 0.62962667647877 0.6777396 0.37159848 prediction 0.507285495570959 Functional Loss - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140993216 chrX:140993218 nonsynonymous SNV 0.020 2 23 hm5C_associated_SNPs_64128 0 0 1 0 1 MAGEC1 chrX:140993195 3'AG 140993195 Downstream 24bp
chr5 5239346 5239346 1 + C T COAD 5239344 + 5239324 5239364 41 AACGGGAATAACTCAGCCTGCACGATTCACAGGGGTCTCTA AACGGGAATAACTCAGCCTGCATGATTCACAGGGGTCTCTA < 41bp 0.753642435781286 0.468128389608152 0.2358352 0.4015806 prediction 0.507284871562572 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5239344 chr5:5239346 nonsynonymous SNV 0.088 0 23 hm5C_associated_SNPs_64129 0 0 0 0 1 ADAMTS16 chr5:5239264 3'AG 5239264 Downstream 83bp
chr11 33083215 33083215 1 + G T UCEC 33083212 + 33083192 33083232 41 AGGCTGAGCCCTGTTGCTGTCCAGAATTACGCTTACCTGAA AGGCTGAGCCCTGTTGCTGTCCATAATTACGCTTACCTGAA < 41bp 0.753626612854395 0.360110526930415 0.26157242 0.069107234 prediction 0.50725322570879 Functional Loss - TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33083212 chr11:33083215 nonsynonymous SNV 0.373 1 24 hm5C_associated_SNPs_64130 0 0 0 0 1 TCP11L1 chr11:33083272 5'GT 33083272 Upstream 58bp
chr3 135789364 135789364 1 + T C UCEC 135789363 + 135789343 135789383 41 TCTCACGTTCCTGAAAGATGCTCCAGAATTCCACTCCCGCT TCTCACGTTCCTGAAAGATGCCCCAGAATTCCACTCCCGCT < 41bp 0.773942004705714 0.520317359183814 0.87636465 0.10051748 prediction 0.5072492910438 Functional Loss - PPP2R3A ENSG00000073711 CDS Human protein_coding chr3:135789363 chr3:135789364 synonymous SNV . 0 22 hm5C_associated_SNPs_64131 0 0 0 0 2 PPP2R3A chr3:135789320 3'AG 135789320 Downstream 45bp
chr3 135789364 135789364 1 + T C UCEC 135789363 + 135789343 135789383 41 TCTCACGTTCCTGAAAGATGCTCCAGAATTCCACTCCCGCT TCTCACGTTCCTGAAAGATGCCCCAGAATTCCACTCCCGCT < 41bp 0.773942004705714 0.520317359183814 0.87636465 0.10051748 prediction 0.5072492910438 Functional Loss - PPP2R3A ENSG00000073711 CDS Human protein_coding chr3:135789363 chr3:135789364 synonymous SNV . 0 22 hm5C_associated_SNPs_64131 0 0 0 0 2 PPP2R3A chr3:135789394 5'GT 135789394 Upstream 31bp
chr12 54970460 54970460 1 + G T UCEC 54970458 + 54970438 54970478 41 AGCGCATTCAGGAGAATAAGCAGAAATGGAAGGAACGGGCA AGCGCATTCAGGAGAATAAGCATAAATGGAAGGAACGGGCA < 41bp 0.753624557742578 0.406720151797689 0.8671024 0.41275793 prediction 0.507249115485156 Functional Loss - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54970458 chr12:54970460 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_64132 0 0 0 0 1 PDE1B chr12:54970485 5'GT 54970485 Upstream 26bp
chrX 69397448 69397448 1 + C T GBM 69397446 + 69397426 69397466 41 CATAACCATGGCTTTCTTCTCCCGACTGAATCTCCAGGAGG CATAACCATGGCTTTCTTCTCCTGACTGAATCTCCAGGAGG < 41bp 0.75482962774066 0.501216850920202 0.31171393 0.22792786 prediction 0.507225553640916 Functional Loss - DGAT2L6 ENSG00000184210 CDS Human protein_coding chrX:69397446 chrX:69397448 stopgain 0.017 0 23 hm5C_associated_SNPs_64135 0 0 0 0 1 DGAT2L6 chrX:69397517 5'GT 69397517 Upstream 70bp
chr17 4647081 4647081 1 + C T SKCM 4647079 + 4647059 4647099 41 CAGGAGACCCCTACCAGCTTCTCCAGGGAGACGGGACTGCC CAGGAGACCCCTACCAGCTTCTTCAGGGAGACGGGACTGCC < 41bp 0.753604723689198 0.454662253163384 0.95996606 0.22622985 prediction 0.507209447378395 Functional Loss - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4647079 chr17:4647081 synonymous SNV . 0 23 hm5C_associated_SNPs_64136 0 0 0 0 2 ZMYND15 chr17:4647062 3'AG 4647062 Downstream 20bp
chr17 4647081 4647081 1 + C T SKCM 4647079 + 4647059 4647099 41 CAGGAGACCCCTACCAGCTTCTCCAGGGAGACGGGACTGCC CAGGAGACCCCTACCAGCTTCTTCAGGGAGACGGGACTGCC < 41bp 0.753604723689198 0.454662253163384 0.95996606 0.22622985 prediction 0.507209447378395 Functional Loss - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4647079 chr17:4647081 synonymous SNV . 0 23 hm5C_associated_SNPs_64136 0 0 0 0 2 ZMYND15 chr17:4647142 5'GT 4647142 Upstream 62bp
chr2 29249748 29249748 1 + C T rs75688672 29249746 + 29249726 29249766 41 AACCCCTTGATCCGGAAATACGCGGCTGAGCACCTCTCAGC AACCCCTTGATCCGGAAATACGTGGCTGAGCACCTCTCAGC < 41bp 0.793181275096995 0.539583324926746 0.77055764 0.8036496 prediction 0.507195900340498 Functional Loss - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29249746 chr2:29249748 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_64137 0 0 0 0 1 TOGARAM2 chr2:29249719 3'AG 29249719 Downstream 30bp
chrX 123504057 123504057 1 + G C OV 123504056 + 123504036 123504076 41 GGGTACATAAAAGATATTTCCGGAAAATAAAAAATCTCATT GGGTACATAAAAGATATTTCCCGAAAATAAAAAATCTCATT < 41bp 0.753596307329753 0.457155404864221 0.23638374 0.021797389 prediction 0.507192614659506 Functional Loss - SH2D1A ENSG00000183918 CDS Human protein_coding chrX:123504056 chrX:123504057 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_64138 0 0 0 0 1 SH2D1A chrX:123504026 3'AG 123504026 Downstream 32bp
chr22 18185123 18185123 1 + G T rs78160286 18185121 + 18185101 18185141 41 GACATACCTGGAGGACTATTCGGCAGAGTACATCATTCAGC GACATACCTGGAGGACTATTCGTCAGAGTACATCATTCAGC < 41bp 0.856507667126061 0.602913148937667 0.8010901 0.13275105 prediction 0.507189036376787 Functional Loss - BCL2L13 ENSG00000099968 CDS Human protein_coding chr22:18185121 chr22:18185123 nonsynonymous SNV 0.942 4 23 hm5C_associated_SNPs_64139 0 0 1 0 1 BCL2L13 chr22:18185152 5'GT 18185152 Upstream 30bp
chr10 95279536 95279536 1 + G T UCEC 95279533 + 95279513 95279553 41 TCTTAAGGAGCTCCGAAAAGCAAGAAATCAAATAACACAGT TCTTAAGGAGCTCCGAAAAGCAATAAATCAAATAACACAGT < 41bp 0.753593618043119 0.380004959078731 0.8965389 0.90881026 prediction 0.507187236086237 Functional Loss - CEP55 ENSG00000138180 CDS Human protein_coding chr10:95279533 chr10:95279536 nonsynonymous SNV 0.983 2 24 hm5C_associated_SNPs_64140 0 0 1 0 2 CEP55 chr10:95279439 3'AG 95279439 Downstream 98bp
chr10 95279536 95279536 1 + G T UCEC 95279533 + 95279513 95279553 41 TCTTAAGGAGCTCCGAAAAGCAAGAAATCAAATAACACAGT TCTTAAGGAGCTCCGAAAAGCAATAAATCAAATAACACAGT < 41bp 0.753593618043119 0.380004959078731 0.8965389 0.90881026 prediction 0.507187236086237 Functional Loss - CEP55 ENSG00000138180 CDS Human protein_coding chr10:95279533 chr10:95279536 nonsynonymous SNV 0.983 2 24 hm5C_associated_SNPs_64140 0 0 1 0 2 CEP55 chr10:95279564 5'GT 95279564 Upstream 29bp
chr6 138197249 138197249 1 + G T LUSC 138197246 + 138197226 138197266 41 GCTACAGATACCCCATTGTTCTCGGCTATGACAGCCATCAT GCTACAGATACCCCATTGTTCTCTGCTATGACAGCCATCAT < 41bp 0.753592071283999 0.367782411064329 0.061233163 0.01908195 prediction 0.507184142567997 Functional Loss - TNFAIP3 ENSG00000118503 CDS Human protein_coding chr6:138197246 chr6:138197249 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_64141 0 0 1 0 1 TNFAIP3 chr6:138197303 5'GT 138197303 Upstream 55bp
chr15 38591587 38591587 1 + C T HNSC 38591585 + 38591565 38591605 41 CTATTTTAGTAATAGTTATGCACGAGTGCGAGCTGTGGTGA CTATTTTAGTAATAGTTATGCATGAGTGCGAGCTGTGGTGA < 41bp 0.808163732219891 0.554578093432053 0.15850607 0.16492891 prediction 0.507171277575677 Functional Loss - SPRED1 ENSG00000166068 CDS Human protein_coding chr15:38591585 chr15:38591587 stopgain 1.000 1 23 hm5C_associated_SNPs_64143 1 0 1 0 1 SPRED1 chr15:38591574 3'AG 38591574 Downstream 14bp
chr7 65551821 65551821 1 + C T rs12536292 65551819 + 65551799 65551839 41 CCCTGGGGAGGTGGGTGAGGCTCCAGTGCCCCGAGGGCCTG CCCTGGGGAGGTGGGTGAGGCTTCAGTGCCCCGAGGGCCTG < 41bp 0.769594927783542 0.51601720086909 0.8940888 0.45427975 prediction 0.507155453828904 Functional Loss - ASL ENSG00000126522 intronic Human protein_coding chr7:65551819 chr7:65551821 . . 0 23 hm5C_associated_SNPs_64145 2 0 1 0 1 ASL chr7:65551731 3'AG 65551731 Downstream 91bp
chr12 124071422 124071422 1 + A T UCEC 124071418 + 124071398 124071438 41 TAACCGGATGTCCACCATGACTCCAAAAATAGTGATGTTCA TAACCGGATGTCCACCATGACTCCTAAAATAGTGATGTTCA < 41bp 0.753562033900714 0.396885529179713 0.9589765 0.02097696 prediction 0.507124067801428 Functional Loss - TMED2 ENSG00000086598 CDS Human protein_coding chr12:124071418 chr12:124071422 synonymous SNV . 0 25 hm5C_associated_SNPs_64148 0 0 1 0 1 TMED2 chr12:124071486 5'GT 124071486 Upstream 65bp
chr2 120414007 120414007 1 + G T SARC 120414005 + 120413985 120414025 41 TGCTCGAGGAGATGAGGAACCTGCGGGGCAAAGCACTCAAC TGCTCGAGGAGATGAGGAACCTTCGGGGCAAAGCACTCAAC < 41bp 0.875280246409148 0.621747863748913 0.84393984 0.7236214 prediction 0.507064765320471 Functional Loss - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120414005 chr2:120414007 synonymous SNV . 0 23 hm5C_associated_SNPs_64154 0 0 0 0 1 CFAP221 chr2:120413938 3'AG 120413938 Downstream 70bp
chr15 25427372 25427372 1 + G T OV 25427370 + 25427350 25427390 41 AGCCCAGAGGAAGACTTGCACTGGGCCCAATGGCCCCAGGT AGCCCAGAGGAAGACTTGCACTTGGCCCAATGGCCCCAGGT < 41bp 0.753531287338215 0.424204516013294 0.88905513 0.56710565 prediction 0.50706257467643 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25427370 chr15:25427372 . . 0 23 hm5C_associated_SNPs_64155 0 0 0 0 1 SNHG14 chr15:25427344 3'AG 25427344 Downstream 29bp
chr6 74072859 74072859 1 + C T BLCA 74072857 + 74072837 74072877 41 CCCGCACGTCCAGGGTATGTCCCAAATCTTGATTCACGTGA CCCGCACGTCCAGGGTATGTCCTAAATCTTGATTCACGTGA < 41bp 0.753530717695979 0.495881923200627 0.09621808 0.07064015 prediction 0.507061435391958 Functional Loss - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74072857 chr6:74072859 stopgain 0.003 0 23 hm5C_associated_SNPs_64156 0 0 0 0 1 KHDC3L chr6:74072818 3'AG 74072818 Downstream 42bp
chr12 72335436 72335436 1 + G C LUAD 72335435 + 72335415 72335455 41 AGCAAACGTGAAGCTGCTACCGAAAGTGGCAAGACAGCAGT AGCAAACGTGAAGCTGCTACCCAAAGTGGCAAGACAGCAGT < 41bp 0.862396423448633 0.608878923357448 0.862172 0.694107 prediction 0.50703500018237 Functional Loss - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72335435 chr12:72335436 nonsynonymous SNV 0.084 2 22 hm5C_associated_SNPs_64158 0 0 0 0 2 TPH2 chr12:72335364 3'AG 72335364 Downstream 73bp
chr12 72335436 72335436 1 + G C LUAD 72335435 + 72335415 72335455 41 AGCAAACGTGAAGCTGCTACCGAAAGTGGCAAGACAGCAGT AGCAAACGTGAAGCTGCTACCCAAAGTGGCAAGACAGCAGT < 41bp 0.862396423448633 0.608878923357448 0.862172 0.694107 prediction 0.50703500018237 Functional Loss - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72335435 chr12:72335436 nonsynonymous SNV 0.084 2 22 hm5C_associated_SNPs_64158 0 0 0 0 2 TPH2 chr12:72335513 5'GT 72335513 Upstream 78bp
chr17 63149573 63149573 1 + G T UCEC 63149571 + 63149551 63149591 41 CGTGAAGGACATGCAGAACCCAGAGACAGGGGTCCGAATGC CGTGAAGGACATGCAGAACCCATAGACAGGGGTCCGAATGC < 41bp 0.75351701086545 0.397793158008083 0.73692507 0.019542307 prediction 0.5070340217309 Functional Loss - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63149571 chr17:63149573 stopgain 0.969 1 23 hm5C_associated_SNPs_64159 0 0 0 3 2 RGS9 chr17:63149540 3'AG 63149540 Downstream 34bp
chr17 63149573 63149573 1 + G T UCEC 63149571 + 63149551 63149591 41 CGTGAAGGACATGCAGAACCCAGAGACAGGGGTCCGAATGC CGTGAAGGACATGCAGAACCCATAGACAGGGGTCCGAATGC < 41bp 0.75351701086545 0.397793158008083 0.73692507 0.019542307 prediction 0.5070340217309 Functional Loss - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63149571 chr17:63149573 stopgain 0.969 1 23 hm5C_associated_SNPs_64159 0 0 0 3 2 RGS9 chr17:63149636 5'GT 63149636 Upstream 64bp
chr4 100787260 100787260 1 + G T COAD 100787257 + 100787237 100787277 41 GTAGAAGCTGATGAGTGGATCAAGATATTACGCTGGAAATT GTAGAAGCTGATGAGTGGATCAATATATTACGCTGGAAATT < 41bp 0.753508505206623 0.37508997786416 0.55409855 0.18308252 prediction 0.507017010413247 Functional Loss - DAPP1 ENSG00000070190 CDS Human protein_coding chr4:100787257 chr4:100787260 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_64162 0 0 0 0 2 DAPP1 chr4:100787191 3'AG 100787191 Downstream 70bp
chr4 100787260 100787260 1 + G T COAD 100787257 + 100787237 100787277 41 GTAGAAGCTGATGAGTGGATCAAGATATTACGCTGGAAATT GTAGAAGCTGATGAGTGGATCAATATATTACGCTGGAAATT < 41bp 0.753508505206623 0.37508997786416 0.55409855 0.18308252 prediction 0.507017010413247 Functional Loss - DAPP1 ENSG00000070190 CDS Human protein_coding chr4:100787257 chr4:100787260 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_64162 0 0 0 0 2 DAPP1 chr4:100787278 5'GT 100787278 Upstream 19bp
chr20 61870935 61870935 1 + G C STAD 61870934 + 61870914 61870954 41 GCAGAGCCCCCGTCCGCAGCCGCGTGCGCACCTTCCTGTCC GCAGAGCCCCCGTCCGCAGCCCCGTGCGCACCTTCCTGTCC < 41bp 0.845884192589114 0.592375831632917 0.661935 0.16964218 prediction 0.507016721912395 Functional Loss - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61870934 chr20:61870935 nonsynonymous SNV 0.033 0 22 hm5C_associated_SNPs_64163 0 0 1 0 1 BIRC7 chr20:61870962 5'GT 61870962 Upstream 28bp
chr14 24620759 24620759 1 + C T rs111795824 24620757 + 24620737 24620777 41 CTCTCCAGGCATTGTTCCAGCACGGAGGTGATGTGTCACGG CTCTCCAGGCATTGTTCCAGCATGGAGGTGATGTGTCACGG < 41bp 0.773014088533899 0.519507744554176 0.8818617 0.83990526 prediction 0.507012687959446 Functional Loss - RNF31 ENSG00000092098;ENSG00000259529 CDS Human other chr14:24620757 chr14:24620759 synonymous SNV . 0 23 hm5C_associated_SNPs_64164 0 0 1 0 1 RNF31 chr14:24620694 3'AG 24620694 Downstream 66bp
chr12 124191372 124191372 1 + T C STAD 124191371 + 124191351 124191391 41 CGTCCAGTTTATTAAAATTCCTGCACAGTTACCCCACCCCC CGTCCAGTTTATTAAAATTCCCGCACAGTTACCCCACCCCC < 41bp 0.765769284037958 0.512270601493737 0.12530372 0.10281953 prediction 0.506997365088442 Functional Loss - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124191371 chr12:124191372 synonymous SNV . 0 22 hm5C_associated_SNPs_64165 0 0 0 0 2 TCTN2 chr12:124191273 3'AG 124191273 Downstream 100bp
chr12 124191372 124191372 1 + T C STAD 124191371 + 124191351 124191391 41 CGTCCAGTTTATTAAAATTCCTGCACAGTTACCCCACCCCC CGTCCAGTTTATTAAAATTCCCGCACAGTTACCCCACCCCC < 41bp 0.765769284037958 0.512270601493737 0.12530372 0.10281953 prediction 0.506997365088442 Functional Loss - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124191371 chr12:124191372 synonymous SNV . 0 22 hm5C_associated_SNPs_64165 0 0 0 0 2 TCTN2 chr12:124191398 5'GT 124191398 Upstream 27bp
chr7 5643549 5643549 1 + C T STAD 5643547 + 5643527 5643567 41 ACCGCCCCATCATCGTGTTCCGCGGGGAGCATGGCTTCATC ACCGCCCCATCATCGTGTTCCGTGGGGAGCATGGCTTCATC < 41bp 0.753489894601642 0.490135444675678 0.8779426 0.6682312 prediction 0.506979789203283 Functional Loss - FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5643547 chr7:5643549 synonymous SNV . 0 23 hm5C_associated_SNPs_64167 0 0 1 0 1 FSCN1 chr7:5643494 3'AG 5643494 Downstream 56bp
chr1 158150856 158150856 1 + G T rs538923031 158150853 + 158150833 158150873 41 GTGCGCAGGTCAGAGGGCGGCGCGCAGCGGCGCTCCGCGAG GTGCGCAGGTCAGAGGGCGGCGCTCAGCGGCGCTCCGCGAG < 41bp 0.753486636978598 0.492597307743323 0.4004535 0.2491833 prediction 0.506973273957196 Functional Loss - CD1D ENSG00000158473 UTR5 Human protein_coding chr1:158150853 chr1:158150856 . . 0 24 hm5C_associated_SNPs_64168 0 0 0 0 1 CD1D chr1:158150952 5'GT 158150952 Upstream 97bp
chr9 126134532 126134532 1 + C T UCEC 126134530 + 126134510 126134550 41 TGTACCTGCCCTGCCAATTTCACGGGGCCTACGTGTGCCCA TGTACCTGCCCTGCCAATTTCATGGGGCCTACGTGTGCCCA < 41bp 0.784369798680621 0.530892728811145 0.9430072 0.8938947 prediction 0.506954139738953 Functional Loss - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126134530 chr9:126134532 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_64172 0 0 0 0 2 CRB2 chr9:126134456 3'AG 126134456 Downstream 77bp
chr9 126134532 126134532 1 + C T UCEC 126134530 + 126134510 126134550 41 TGTACCTGCCCTGCCAATTTCACGGGGCCTACGTGTGCCCA TGTACCTGCCCTGCCAATTTCATGGGGCCTACGTGTGCCCA < 41bp 0.784369798680621 0.530892728811145 0.9430072 0.8938947 prediction 0.506954139738953 Functional Loss - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126134530 chr9:126134532 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_64172 0 0 0 0 2 CRB2 chr9:126134621 5'GT 126134621 Upstream 90bp
chr8 99140714 99140714 1 + G T LUSC 99140711 + 99140691 99140731 41 CGGCACATGCGACGAAGAGCCATGAGCCACAACGTCAAACG CGGCACATGCGACGAAGAGCCATTAGCCACAACGTCAAACG < 41bp 0.753464044852094 0.36088871804558 0.20071867 0.119912565 prediction 0.506928089704189 Functional Loss - POP1 ENSG00000104356 CDS Human protein_coding chr8:99140711 chr8:99140714 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_64178 0 0 0 0 1 POP1 chr8:99140768 5'GT 99140768 Upstream 55bp
chr11 45926079 45926079 1 + C T rs17847257 45926077 + 45926057 45926097 41 GCTCAGTCCAGGTTCCCTATCACAAGGGCAATGACGTCCTC GCTCAGTCCAGGTTCCCTATCATAAGGGCAATGACGTCCTC < 41bp 0.797046162663908 0.543582205276918 0.36610422 0.6001968 prediction 0.506927914773981 Functional Loss - MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926077 chr11:45926079 synonymous SNV . 0 23 hm5C_associated_SNPs_64179 0 0 0 0 2 MAPK8IP1 chr11:45926006 3'AG 45926006 Downstream 74bp
chr11 45926079 45926079 1 + C T rs17847257 45926077 + 45926057 45926097 41 GCTCAGTCCAGGTTCCCTATCACAAGGGCAATGACGTCCTC GCTCAGTCCAGGTTCCCTATCATAAGGGCAATGACGTCCTC < 41bp 0.797046162663908 0.543582205276918 0.36610422 0.6001968 prediction 0.506927914773981 Functional Loss - MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926077 chr11:45926079 synonymous SNV . 0 23 hm5C_associated_SNPs_64179 0 0 0 0 2 MAPK8IP1 chr11:45926115 5'GT 45926115 Upstream 37bp
chr17 78166351 78166351 1 + G C CESC 78166347 + 78166327 78166367 41 AGCCCTGTCCACGGGAGAAGCAGCGGCTGGTGCGGATGCAT AGCCCTGTCCACGGGAGAAGCAGCCGCTGGTGCGGATGCAT < 41bp 0.753431701835346 0.450804863716925 0.85638034 0.3351624 prediction 0.506863403670691 Functional Loss - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78166347 chr17:78166351 nonsynonymous SNV 0.911 1 25 hm5C_associated_SNPs_64185 0 0 0 0 2 CARD14 chr17:78166302 3'AG 78166302 Downstream 50bp
chr17 78166351 78166351 1 + G C CESC 78166347 + 78166327 78166367 41 AGCCCTGTCCACGGGAGAAGCAGCGGCTGGTGCGGATGCAT AGCCCTGTCCACGGGAGAAGCAGCCGCTGGTGCGGATGCAT < 41bp 0.753431701835346 0.450804863716925 0.85638034 0.3351624 prediction 0.506863403670691 Functional Loss - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78166347 chr17:78166351 nonsynonymous SNV 0.911 1 25 hm5C_associated_SNPs_64185 0 0 0 0 2 CARD14 chr17:78166418 5'GT 78166418 Upstream 68bp
chr16 89788983 89788983 1 + G C LUAD 89788982 + 89788962 89789002 41 GGTCACTGTCGCCTCTGCCACGGGAAGTTTTCCTCGAGAAG GGTCACTGTCGCCTCTGCCACCGGAAGTTTTCCTCGAGAAG < 41bp 0.852014099139498 0.598594652855598 0.9258263 0.9074259 prediction 0.5068388925678 Functional Loss - ZNF276 ENSG00000158805 CDS Human protein_coding chr16:89788982 chr16:89788983 nonsynonymous SNV 0.978 4 22 hm5C_associated_SNPs_64187 0 0 1 0 1 ZNF276 chr16:89788939 3'AG 89788939 Downstream 45bp
chr1 24076373 24076373 1 + C T UCEC 24076371 + 24076351 24076391 41 CAGTAAATAGCTTGCGAAAACACGAGCATGTTGGAAGCTTT CAGTAAATAGCTTGCGAAAACATGAGCATGTTGGAAGCTTT < 41bp 0.819759337390519 0.566355150594428 0.35769397 0.32681978 prediction 0.506808373592182 Functional Loss - ELOA ENSG00000011007 CDS Human protein_coding chr1:24076371 chr1:24076373 synonymous SNV . 0 23 hm5C_associated_SNPs_64189 0 0 1 0 2 ELOA chr1:24076332 3'AG 24076332 Downstream 42bp
chr1 24076373 24076373 1 + C T UCEC 24076371 + 24076351 24076391 41 CAGTAAATAGCTTGCGAAAACACGAGCATGTTGGAAGCTTT CAGTAAATAGCTTGCGAAAACATGAGCATGTTGGAAGCTTT < 41bp 0.819759337390519 0.566355150594428 0.35769397 0.32681978 prediction 0.506808373592182 Functional Loss - ELOA ENSG00000011007 CDS Human protein_coding chr1:24076371 chr1:24076373 synonymous SNV . 0 23 hm5C_associated_SNPs_64189 0 0 1 0 2 ELOA chr1:24076438 5'GT 24076438 Upstream 66bp
chr2 120395992 120395992 1 + C T UCEC 120395990 + 120395970 120396010 41 CAAAAGCAGTTTCTCCATCACACGGTAATGTCATCACCAGG CAAAAGCAGTTTCTCCATCACATGGTAATGTCATCACCAGG < 41bp 0.753546439946827 0.500157006106212 0.015736997 0.080402285 prediction 0.506778867681229 Functional Loss - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120395990 chr2:120395992 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_64191 0 0 0 0 1 CFAP221 chr2:120395993 5'GT 120395993 Upstream 2bp
chr1 150315916 150315916 1 + C T SKCM 150315914 + 150315894 150315934 41 CAGGCTGGGCCTGATGCCTCCTCCAGAACCCAAAGGTGCAT CAGGCTGGGCCTGATGCCTCCTTCAGAACCCAAAGGTGCAT < 41bp 0.753388198841594 0.453797062604088 0.9153675 0.021697849 prediction 0.506776397683188 Functional Loss - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150315914 chr1:150315916 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_64192 0 0 1 0 1 PRPF3 chr1:150315928 5'GT 150315928 Upstream 13bp
chr11 11976640 11976640 1 + G T SARC 11976637 + 11976617 11976657 41 GATATTCATCAGGATTTAGACTGGAATCCTAAAGTTTCTAC GATATTCATCAGGATTTAGACTGTAATCCTAAAGTTTCTAC < 41bp 0.753377674386362 0.396248039076363 0.008077174 0.014382541 prediction 0.506755348772725 Functional Loss - USP47 ENSG00000170242 CDS Human protein_coding chr11:11976637 chr11:11976640 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_64194 0 0 1 0 1 USP47 chr11:11976711 5'GT 11976711 Upstream 72bp
chr10 133976838 133976838 1 + C T UCEC 133976836 + 133976816 133976856 41 TGGCCGTGGAGCAGTGGAAGCGCCAGGTCATGAGTGAGCTG TGGCCGTGGAGCAGTGGAAGCGTCAGGTCATGAGTGAGCTG < 41bp 0.789024933031022 0.535647861382235 0.33450997 0.3028975 prediction 0.506754143297574 Functional Loss - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133976836 chr10:133976838 synonymous SNV . 0 23 hm5C_associated_SNPs_64196 0 0 0 0 1 JAKMIP3 chr10:133976916 5'GT 133976916 Upstream 79bp
chr19 50157994 50157994 1 + C T SKCM 50157992 + 50157972 50158012 41 TTGGGTCTGCCCCCTGGCCCCTCCAGCTACCTGCTTCCTGG TTGGGTCTGCCCCCTGGCCCCTTCAGCTACCTGCTTCCTGG < 41bp 0.793097591850229 0.539726435212298 0.95854765 0.2519194 prediction 0.506742313275863 Functional Loss - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50157992 chr19:50157994 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_64199 0 0 1 0 1 SCAF1 chr19:50157909 3'AG 50157909 Downstream 86bp
chrX 13588024 13588024 1 + G T LUAD 13588022 + 13588002 13588042 41 GCGCTCCCGCTGCTGCTCTCCTGGGTGGCAGGTGGTTTCGG GCGCTCCCGCTGCTGCTCTCCTTGGTGGCAGGTGGTTTCGG < 41bp 0.890145928496634 0.636775392994014 0.87960154 0.18733263 prediction 0.506741071005241 Functional Loss - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13588022 chrX:13588024 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_64200 0 0 0 0 1 EGFL6 chrX:13588054 5'GT 13588054 Upstream 31bp
chr6 107854764 107854764 1 + A T LUSC 107854760 + 107854740 107854780 41 GGAAGTGAGGTGAAAAGCTTCTGCAGCGAGAAGTGCTTTGC GGAAGTGAGGTGAAAAGCTTCTGCTGCGAGAAGTGCTTTGC < 41bp 0.753368177039421 0.410894011075705 0.40691385 0.2794494 prediction 0.506736354078842 Functional Loss - SOBP ENSG00000112320 CDS Human protein_coding chr6:107854760 chr6:107854764 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_64201 0 0 1 0 1 SOBP chr6:107854814 5'GT 107854814 Upstream 51bp
chr14 75469779 75469779 1 + G C LIHC 75469778 + 75469758 75469798 41 TGAAGCGGGGTGGTGGGCCGCGCAGCTCCGAGGAAATGGCT TGAAGCGGGGTGGTGGGCCGCCCAGCTCCGAGGAAATGGCT < 41bp 0.753368070855796 0.442304387171099 0.33006477 0.23495868 prediction 0.506736141711592 Functional Loss - EIF2B2 ENSG00000119718 CDS Human protein_coding chr14:75469778 chr14:75469779 nonsynonymous SNV 0.498 2 22 hm5C_associated_SNPs_64202 0 0 1 0 1 EIF2B2 chr14:75469856 5'GT 75469856 Upstream 78bp
chrX 105905286 105905286 1 + A T UCEC 105905282 + 105905262 105905302 41 GCTAATCTGCAAGGGAAAGCCAGAAAAACTATAAGTGATAG GCTAATCTGCAAGGGAAAGCCAGATAAACTATAAGTGATAG < 41bp 0.753358749197481 0.444294856230737 0.9203664 0.724769 prediction 0.506717498394961 Functional Loss - CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105905282 chrX:105905286 stopgain 0.612 0 25 hm5C_associated_SNPs_64204 0 0 1 0 1 CXorf57 chrX:105905245 3'AG 105905245 Downstream 42bp
chr10 12131171 12131171 1 + C T LIHC 12131169 + 12131149 12131189 41 CCCCGTGGCCGTGGGCAAAACTCGCGGCAGGCAGCAGTCTC CCCCGTGGCCGTGGGCAAAACTTGCGGCAGGCAGCAGTCTC < 41bp 0.81480173007947 0.561446103511049 0.40363735 0.15386108 prediction 0.506711253136842 Functional Loss - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12131169 chr10:12131171 nonsynonymous SNV 0.945 4 23 hm5C_associated_SNPs_64207 0 0 1 0 1 DHTKD1 chr10:12131254 5'GT 12131254 Upstream 84bp
chrX 147026500 147026500 1 + G C LUSC 147026496 + 147026476 147026516 41 AAGAGAGGGAGAGCTTCCTGCGCAGAGGAGACGGACGGCGG AAGAGAGGGAGAGCTTCCTGCGCACAGGAGACGGACGGCGG < 41bp 0.803615047621927 0.55025982697568 0.30006188 0.121825784 prediction 0.506710441292493 Functional Loss - FMR1 ENSG00000102081 CDS Human protein_coding chrX:147026496 chrX:147026500 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_64208 0 0 1 0 2 FMR1 chrX:147026464 3'AG 147026464 Downstream 37bp
chrX 147026500 147026500 1 + G C LUSC 147026496 + 147026476 147026516 41 AAGAGAGGGAGAGCTTCCTGCGCAGAGGAGACGGACGGCGG AAGAGAGGGAGAGCTTCCTGCGCACAGGAGACGGACGGCGG < 41bp 0.803615047621927 0.55025982697568 0.30006188 0.121825784 prediction 0.506710441292493 Functional Loss - FMR1 ENSG00000102081 CDS Human protein_coding chrX:147026496 chrX:147026500 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_64208 0 0 1 0 2 FMR1 chrX:147026571 5'GT 147026571 Upstream 72bp
chr7 87564431 87564431 1 + C T HNSC 87564429 + 87564409 87564449 41 CCACTGCGCCTCATCTACCGCTCGGGCGGCGAAGACGAAAG CCACTGCGCCTCATCTACCGCTTGGGCGGCGAAGACGAAAG < 41bp 0.753343383058923 0.498698624663794 0.038284093 0.08019766 prediction 0.506686766117846 Functional Loss - ADAM22 ENSG00000008277 CDS Human protein_coding chr7:87564429 chr7:87564431 nonsynonymous SNV 0.300 0 23 hm5C_associated_SNPs_64210 0 0 1 0 3 ADAM22 chr7:87564341 3'AG 87564341 Downstream 91bp
chr7 87564431 87564431 1 + C T HNSC 87564429 + 87564409 87564449 41 CCACTGCGCCTCATCTACCGCTCGGGCGGCGAAGACGAAAG CCACTGCGCCTCATCTACCGCTTGGGCGGCGAAGACGAAAG < 41bp 0.753343383058923 0.498698624663794 0.038284093 0.08019766 prediction 0.506686766117846 Functional Loss - ADAM22 ENSG00000008277 CDS Human protein_coding chr7:87564429 chr7:87564431 nonsynonymous SNV 0.300 0 23 hm5C_associated_SNPs_64210 0 0 1 0 3 ADAM22 chr7:87564344 3'AG 87564344 Downstream 88bp
chr7 87564431 87564431 1 + C T HNSC 87564429 + 87564409 87564449 41 CCACTGCGCCTCATCTACCGCTCGGGCGGCGAAGACGAAAG CCACTGCGCCTCATCTACCGCTTGGGCGGCGAAGACGAAAG < 41bp 0.753343383058923 0.498698624663794 0.038284093 0.08019766 prediction 0.506686766117846 Functional Loss - ADAM22 ENSG00000008277 CDS Human protein_coding chr7:87564429 chr7:87564431 nonsynonymous SNV 0.300 0 23 hm5C_associated_SNPs_64210 0 0 1 0 3 ADAM22 chr7:87564501 5'GT 87564501 Upstream 71bp
chr1 109238366 109238366 1 + G T SARC 109238364 + 109238344 109238384 41 GGAGAAAGGAAGCAGGAAAACAGCGGGCCAGACAGGGATGT GGAGAAAGGAAGCAGGAAAACATCGGGCCAGACAGGGATGT < 41bp 0.844289749040911 0.590957214613091 0.3739137 0.24903354 prediction 0.50666506885564 Functional Loss - PRPF38B ENSG00000134186 CDS Human protein_coding chr1:109238364 chr1:109238366 nonsynonymous SNV 0.880 1 23 hm5C_associated_SNPs_64212 0 0 1 0 3 PRPF38B chr1:109238324 3'AG 109238324 Downstream 43bp
chr1 109238366 109238366 1 + G T SARC 109238364 + 109238344 109238384 41 GGAGAAAGGAAGCAGGAAAACAGCGGGCCAGACAGGGATGT GGAGAAAGGAAGCAGGAAAACATCGGGCCAGACAGGGATGT < 41bp 0.844289749040911 0.590957214613091 0.3739137 0.24903354 prediction 0.50666506885564 Functional Loss - PRPF38B ENSG00000134186 CDS Human protein_coding chr1:109238364 chr1:109238366 nonsynonymous SNV 0.880 1 23 hm5C_associated_SNPs_64212 0 0 1 0 3 PRPF38B chr1:109238392 5'GT 109238392 Upstream 27bp
chr1 109238366 109238366 1 + G T SARC 109238364 + 109238344 109238384 41 GGAGAAAGGAAGCAGGAAAACAGCGGGCCAGACAGGGATGT GGAGAAAGGAAGCAGGAAAACATCGGGCCAGACAGGGATGT < 41bp 0.844289749040911 0.590957214613091 0.3739137 0.24903354 prediction 0.50666506885564 Functional Loss - PRPF38B ENSG00000134186 CDS Human protein_coding chr1:109238364 chr1:109238366 nonsynonymous SNV 0.880 1 23 hm5C_associated_SNPs_64212 0 0 1 0 3 PRPF38B chr1:109238402 5'GT 109238402 Upstream 37bp
chr5 76714062 76714062 1 + C T UCEC 76714060 + 76714040 76714080 41 TCCCCATATCCCAGGGAAGCCTCGATCAGTTGGATGAGGTG TCCCCATATCCCAGGGAAGCCTTGATCAGTTGGATGAGGTG < 41bp 0.75331972447748 0.464779894887597 0.9221424 0.188975 prediction 0.50663944895496 Functional Loss - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76714060 chr5:76714062 synonymous SNV . 0 23 hm5C_associated_SNPs_64213 0 0 0 0 1 PDE8B chr5:76714054 3'AG 76714054 Downstream 9bp
chr16 90030592 90030592 1 + G T CESC 90030590 + 90030570 90030610 41 CTTGGCAGCTCCAGGATCGGCAGCATTTTGTGGAGAACGAC CTTGGCAGCTCCAGGATCGGCATCATTTTGTGGAGAACGAC < 41bp 0.75329997788484 0.418230880316255 0.30814326 0.24963942 prediction 0.506599955769681 Functional Loss - DEF8 ENSG00000140995 CDS Human protein_coding chr16:90030590 chr16:90030592 nonsynonymous SNV 0.988 4 23 hm5C_associated_SNPs_64216 0 0 1 0 1 DEF8 chr16:90030578 3'AG 90030578 Downstream 15bp
chrX 153049639 153049639 1 + G C OV 153049635 + 153049615 153049655 41 TCCTCTCCGGCTCGTCCAATCAGCGAGAGACCGGGGGCCTC TCCTCTCCGGCTCGTCCAATCAGCCAGAGACCGGGGGCCTC < 41bp 0.83719348725804 0.583905844446207 0.84710485 0.23458794 prediction 0.506575285623664 Functional Loss - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153049635 chrX:153049639 nonsynonymous SNV 0.318 0 25 hm5C_associated_SNPs_64219 0 0 0 0 2 SRPK3 chrX:153049576 3'AG 153049576 Downstream 64bp
chrX 153049639 153049639 1 + G C OV 153049635 + 153049615 153049655 41 TCCTCTCCGGCTCGTCCAATCAGCGAGAGACCGGGGGCCTC TCCTCTCCGGCTCGTCCAATCAGCCAGAGACCGGGGGCCTC < 41bp 0.83719348725804 0.583905844446207 0.84710485 0.23458794 prediction 0.506575285623664 Functional Loss - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153049635 chrX:153049639 nonsynonymous SNV 0.318 0 25 hm5C_associated_SNPs_64219 0 0 0 0 2 SRPK3 chrX:153049668 5'GT 153049668 Upstream 30bp
chr4 656381 656381 1 + C T STAD 656379 + 656359 656399 41 TGTGCCATGACATCGACCACCGCGGCACCAACAACCTGTAC TGTGCCATGACATCGACCACCGTGGCACCAACAACCTGTAC < 41bp 0.770626779393055 0.517339157175619 0.349131 0.3843435 prediction 0.50657524443487 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:656379 chr4:656381 synonymous SNV . 0 23 hm5C_associated_SNPs_64220 0 0 0 0 2 PDE6B chr4:656298 3'AG 656298 Downstream 84bp
chr4 656381 656381 1 + C T STAD 656379 + 656359 656399 41 TGTGCCATGACATCGACCACCGCGGCACCAACAACCTGTAC TGTGCCATGACATCGACCACCGTGGCACCAACAACCTGTAC < 41bp 0.770626779393055 0.517339157175619 0.349131 0.3843435 prediction 0.50657524443487 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:656379 chr4:656381 synonymous SNV . 0 23 hm5C_associated_SNPs_64220 0 0 0 0 2 PDE6B chr4:656407 5'GT 656407 Upstream 27bp
chrX 152994707 152994707 1 + G T UCEC 152994705 + 152994685 152994725 41 AGGTGGAGCTGGCCCTGCTACAGCGCTCCTACCAGGACCTG AGGTGGAGCTGGCCCTGCTACATCGCTCCTACCAGGACCTG < 41bp 0.753283420758509 0.394903806491833 0.15707767 0.18575647 prediction 0.506566841517017 Functional Loss - ABCD1 ENSG00000101986 CDS Human protein_coding chrX:152994705 chrX:152994707 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_64222 0 0 0 0 1 ABCD1 chrX:152994687 3'AG 152994687 Downstream 21bp
chr1 236890981 236890981 1 + G T LUAD 236890978 + 236890958 236890998 41 TCTTCTCGACGGCTGTGAAGCTGGAAAGATGGCCTTGGACT TCTTCTCGACGGCTGTGAAGCTGTAAAGATGGCCTTGGACT < 41bp 0.753280736812531 0.447528370238682 0.30057168 0.10797185 prediction 0.506561473625062 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236890978 chr1:236890981 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_64223 0 0 0 0 2 ACTN2 chr1:236890978 3'AG 236890978 Downstream 4bp
chr1 236890981 236890981 1 + G T LUAD 236890978 + 236890958 236890998 41 TCTTCTCGACGGCTGTGAAGCTGGAAAGATGGCCTTGGACT TCTTCTCGACGGCTGTGAAGCTGTAAAGATGGCCTTGGACT < 41bp 0.753280736812531 0.447528370238682 0.30057168 0.10797185 prediction 0.506561473625062 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236890978 chr1:236890981 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_64223 0 0 0 0 2 ACTN2 chr1:236891056 5'GT 236891056 Upstream 76bp
chr20 32357950 32357950 1 + G T LUAD 32357947 + 32357927 32357967 41 TCCCAAAGCTCGACACATTTCTGGAGCACATCAAGAGCCAC TCCCAAAGCTCGACACATTTCTGTAGCACATCAAGAGCCAC < 41bp 0.910782454292857 0.657506477411303 0.429848 0.23522407 prediction 0.506551953763108 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32357947 chr20:32357950 stopgain 1.000 1 24 hm5C_associated_SNPs_64224 0 0 0 0 1 ZNF341 chr20:32357890 3'AG 32357890 Downstream 61bp
chrX 30738208 30738208 1 + G C LUSC 30738207 + 30738187 30738227 41 AAGCTGTTTGTTTCCAAACTCGAGAGGTAACAAATATGGGC AAGCTGTTTGTTTCCAAACTCCAGAGGTAACAAATATGGGC < 41bp 0.753275968088045 0.454929138054047 0.92434514 0.8737371 prediction 0.50655193617609 Functional Loss - GK ENSG00000198814 CDS Human protein_coding chrX:30738207 chrX:30738208 nonsynonymous SNV 0.994 5 22 hm5C_associated_SNPs_64225 0 0 1 0 2 GK chrX:30738128 3'AG 30738128 Downstream 81bp
chrX 30738208 30738208 1 + G C LUSC 30738207 + 30738187 30738227 41 AAGCTGTTTGTTTCCAAACTCGAGAGGTAACAAATATGGGC AAGCTGTTTGTTTCCAAACTCCAGAGGTAACAAATATGGGC < 41bp 0.753275968088045 0.454929138054047 0.92434514 0.8737371 prediction 0.50655193617609 Functional Loss - GK ENSG00000198814 CDS Human protein_coding chrX:30738207 chrX:30738208 nonsynonymous SNV 0.994 5 22 hm5C_associated_SNPs_64225 0 0 1 0 2 GK chrX:30738212 5'GT 30738212 Upstream 5bp
chr4 110754369 110754369 1 + A C UCEC 110754365 + 110754345 110754385 41 TACAAGGAACTTCGGACACCCACAAATGCAATTATTATTAA TACAAGGAACTTCGGACACCCACACATGCAATTATTATTAA < 41bp 0.753270688256703 0.338290308485723 0.16186228 0.0059925616 prediction 0.506541376513407 Functional Loss - RRH ENSG00000180245 CDS Human protein_coding chr4:110754365 chr4:110754369 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_64227 0 0 1 0 1 RRH chr4:110754295 3'AG 110754295 Downstream 75bp
chr6 74210321 74210321 1 + G T LUSC 74210319 + 74210299 74210339 41 CGGGGCTGCTAGTCGCATACCCGGAGTAACACCTGCCGCCA CGGGGCTGCTAGTCGCATACCCTGAGTAACACCTGCCGCCA < 41bp 0.871436252119816 0.618169599444157 0.9121828 0.10165578 prediction 0.506533305351318 Functional Loss - MTO1 ENSG00000135297 CDS Human protein_coding chr6:74210319 chr6:74210321 stopgain 0.997 1 23 hm5C_associated_SNPs_64229 0 0 1 0 1 MTO1 chr6:74210297 3'AG 74210297 Downstream 25bp
chr8 22429908 22429908 1 + G C COAD 22429907 + 22429887 22429927 41 GAAGACGAGCTGGAGCTGCGCGAGGGGGACAGGGTGGATGT GAAGACGAGCTGGAGCTGCGCCAGGGGGACAGGGTGGATGT < 41bp 0.84814842835236 0.594891043198179 0.89098984 0.84377265 prediction 0.506514770308363 Functional Loss - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22429907 chr8:22429908 nonsynonymous SNV 0.606 2 22 hm5C_associated_SNPs_64230 0 0 1 0 2 SORBS3 chr8:22429853 3'AG 22429853 Downstream 56bp
chr8 22429908 22429908 1 + G C COAD 22429907 + 22429887 22429927 41 GAAGACGAGCTGGAGCTGCGCGAGGGGGACAGGGTGGATGT GAAGACGAGCTGGAGCTGCGCCAGGGGGACAGGGTGGATGT < 41bp 0.84814842835236 0.594891043198179 0.89098984 0.84377265 prediction 0.506514770308363 Functional Loss - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22429907 chr8:22429908 nonsynonymous SNV 0.606 2 22 hm5C_associated_SNPs_64230 0 0 1 0 2 SORBS3 chr8:22429959 5'GT 22429959 Upstream 52bp
chr16 67902441 67902441 1 + C T BRCA 67902439 + 67902419 67902459 41 AAAATTCAGCACAGCATCACCGCGCAGGACCATCAGCCCAC AAAATTCAGCACAGCATCACCGTGCAGGACCATCAGCCCAC < 41bp 0.792521740938504 0.539264383756359 0.048690915 0.038517207 prediction 0.50651471436429 Functional Loss - NUTF2 ENSG00000102898 CDS Human protein_coding chr16:67902439 chr16:67902441 nonsynonymous SNV 0.785 1 23 hm5C_associated_SNPs_64231 0 0 1 0 2 NUTF2 chr16:67902404 3'AG 67902404 Downstream 38bp
chr16 67902441 67902441 1 + C T BRCA 67902439 + 67902419 67902459 41 AAAATTCAGCACAGCATCACCGCGCAGGACCATCAGCCCAC AAAATTCAGCACAGCATCACCGTGCAGGACCATCAGCCCAC < 41bp 0.792521740938504 0.539264383756359 0.048690915 0.038517207 prediction 0.50651471436429 Functional Loss - NUTF2 ENSG00000102898 CDS Human protein_coding chr16:67902439 chr16:67902441 nonsynonymous SNV 0.785 1 23 hm5C_associated_SNPs_64231 0 0 1 0 2 NUTF2 chr16:67902502 5'GT 67902502 Upstream 62bp
chr15 74536427 74536427 1 + C T SKCM 74536425 + 74536405 74536445 41 AGGAGACCATCATGGTCACCCTCCATGGGGCTACCAACCTG AGGAGACCATCATGGTCACCCTTCATGGGGCTACCAACCTG < 41bp 0.822472629357253 0.569219847765588 0.9723756 0.34474373 prediction 0.506505563183329 Functional Loss - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74536425 chr15:74536427 synonymous SNV . 0 23 hm5C_associated_SNPs_64233 0 0 0 0 1 CCDC33 chr15:74536489 5'GT 74536489 Upstream 63bp
chr11 582068 582068 1 + G T SARC 582066 + 582046 582086 41 GGGCGTCTGAGGAGGAAGACCTGGAAGACAGATCTGGTGAG GGGCGTCTGAGGAGGAAGACCTTGAAGACAGATCTGGTGAG < 41bp 0.869915082040254 0.616667408596282 0.7862823 0.3849569 prediction 0.506495346887945 Functional Loss - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:582066 chr11:582068 synonymous SNV . 0 23 hm5C_associated_SNPs_64236 0 0 1 0 1 PHRF1 chr11:582081 5'GT 582081 Upstream 14bp
chr7 120629922 120629922 1 + A T UCEC 120629918 + 120629898 120629938 41 TCTGGTAATGCCCAGGAAACCAGAAAGGTAAGACTCTCATA TCTGGTAATGCCCAGGAAACCAGATAGGTAAGACTCTCATA < 41bp 0.811486152044707 0.558239114981578 0.41060412 0.34300506 prediction 0.506494074126259 Functional Loss - CPED1 ENSG00000106034 CDS Human protein_coding chr7:120629918 chr7:120629922 stopgain 0.926 1 25 hm5C_associated_SNPs_64237 0 0 1 0 1 CPED1 chr7:120629924 5'GT 120629924 Upstream 3bp
chr1 203025990 203025990 1 + G T PRAD 203025987 + 203025967 203026007 41 CTGCACAAGGGCGCCAAGCGCAAGGGCATCAAGTCGTCCAT CTGCACAAGGGCGCCAAGCGCAATGGCATCAAGTCGTCCAT < 41bp 0.753235702182138 0.351685050232099 0.8739848 0.13569808 prediction 0.506471404364275 Functional Loss - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203025987 chr1:203025990 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_64240 0 0 0 0 1 PPFIA4 chr1:203026078 5'GT 203026078 Upstream 89bp
chr16 1398189 1398189 1 + G T LUAD 1398186 + 1398166 1398206 41 GCTGTCCACCAACGACTTCGCTGGGGAGGCGGCCCTCGGCC GCTGTCCACCAACGACTTCGCTGTGGAGGCGGCCCTCGGCC < 41bp 0.917461006619827 0.664230373277025 0.6971781 0.14832798 prediction 0.506461266685605 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1398186 chr16:1398189 nonsynonymous SNV 0.166 5 24 hm5C_associated_SNPs_64241 0 0 0 0 1 BAIAP3 chr16:1398097 3'AG 1398097 Downstream 93bp
chr6 33654203 33654203 1 + C T rs145776727 33654201 + 33654181 33654221 41 GCCAGACTTGCATTGTGACTCACGAGTCCAATGGCATAGAC GCCAGACTTGCATTGTGACTCATGAGTCCAATGGCATAGAC < 41bp 0.764940893280713 0.511713645064063 0.10219121 0.056111783 prediction 0.506454496433301 Functional Loss - ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33654201 chr6:33654203 synonymous SNV . 0 23 hm5C_associated_SNPs_64242 0 0 1 0 2 ITPR3 chr6:33654186 3'AG 33654186 Downstream 18bp
chr6 33654203 33654203 1 + C T rs145776727 33654201 + 33654181 33654221 41 GCCAGACTTGCATTGTGACTCACGAGTCCAATGGCATAGAC GCCAGACTTGCATTGTGACTCATGAGTCCAATGGCATAGAC < 41bp 0.764940893280713 0.511713645064063 0.10219121 0.056111783 prediction 0.506454496433301 Functional Loss - ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33654201 chr6:33654203 synonymous SNV . 0 23 hm5C_associated_SNPs_64242 0 0 1 0 2 ITPR3 chr6:33654296 5'GT 33654296 Upstream 94bp
chr2 79254206 79254206 1 + G T LUSC 79254204 + 79254184 79254224 41 GGAAAACTGGTGTCTGTGCTCAGTGGGGCTGAGGGATCCTT GGAAAACTGGTGTCTGTGCTCATTGGGGCTGAGGGATCCTT < 41bp 0.753226393075655 0.393983382564822 0.65172535 0.36851656 prediction 0.50645278615131 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79254204 chr2:79254206 nonsynonymous SNV 0.791 3 23 hm5C_associated_SNPs_64243 0 0 0 0 2 REG3G chr2:79254160 3'AG 79254160 Downstream 47bp
chr2 79254206 79254206 1 + G T LUSC 79254204 + 79254184 79254224 41 GGAAAACTGGTGTCTGTGCTCAGTGGGGCTGAGGGATCCTT GGAAAACTGGTGTCTGTGCTCATTGGGGCTGAGGGATCCTT < 41bp 0.753226393075655 0.393983382564822 0.65172535 0.36851656 prediction 0.50645278615131 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79254204 chr2:79254206 nonsynonymous SNV 0.791 3 23 hm5C_associated_SNPs_64243 0 0 0 0 2 REG3G chr2:79254297 5'GT 79254297 Upstream 92bp
chr19 34113183 34113183 1 + G T rs191155315 34113180 + 34113160 34113200 41 GGACTGGAGGCGCCCGCGGCCTCGGGTGCGTCCGCTGCGCC GGACTGGAGGCGCCCGCGGCCTCTGGTGCGTCCGCTGCGCC < 41bp 0.89778508824374 0.644571466038424 0.43277213 0.27018127 prediction 0.506427244410631 Functional Loss - CHST8 ENSG00000124302 UTR5 Human protein_coding chr19:34113180 chr19:34113183 . . 0 24 hm5C_associated_SNPs_64248 0 0 0 0 1 CHST8 chr19:34113202 5'GT 34113202 Upstream 20bp
chr7 100198386 100198386 1 - C G rs11768465 100198390 - 100198370 100198410 41 CCTACGATCTCCTTCATCTTCTCCGTGCGGTCCTGCAACGT CCTACGATCTCCTTCATCTTCTCCCTGCGGTCCTGCAACGT < 41bp 0.753211495185066 0.472248414989044 0.17691311 0.12782076 prediction 0.506422990370133 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100198390 chr7:100198386 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_64249 0 0 0 0 2 FBXO24 chr7:100198346 5'GT 100198346 Upstream 41bp
chr7 100198386 100198386 1 - C G rs11768465 100198390 - 100198370 100198410 41 CCTACGATCTCCTTCATCTTCTCCGTGCGGTCCTGCAACGT CCTACGATCTCCTTCATCTTCTCCCTGCGGTCCTGCAACGT < 41bp 0.753211495185066 0.472248414989044 0.17691311 0.12782076 prediction 0.506422990370133 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100198390 chr7:100198386 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_64249 0 0 0 0 2 FBXO24 chr7:100198475 3'AG 100198475 Downstream 90bp
chr1 76269499 76269499 1 + C T BRCA 76269497 + 76269477 76269517 41 TGGTGCAAGCTCATCTTCTGCACGAGATACTAATTATCCTC TGGTGCAAGCTCATCTTCTGCATGAGATACTAATTATCCTC < 41bp 0.793793709052503 0.540599516627975 0.06561911 0.029936641 prediction 0.506388384849055 Functional Loss - MSH4 ENSG00000057468 CDS Human protein_coding chr1:76269497 chr1:76269499 stopgain 0.996 0 23 hm5C_associated_SNPs_64253 0 0 0 0 2 MSH4 chr1:76269416 3'AG 76269416 Downstream 84bp
chr1 76269499 76269499 1 + C T BRCA 76269497 + 76269477 76269517 41 TGGTGCAAGCTCATCTTCTGCACGAGATACTAATTATCCTC TGGTGCAAGCTCATCTTCTGCATGAGATACTAATTATCCTC < 41bp 0.793793709052503 0.540599516627975 0.06561911 0.029936641 prediction 0.506388384849055 Functional Loss - MSH4 ENSG00000057468 CDS Human protein_coding chr1:76269497 chr1:76269499 stopgain 0.996 0 23 hm5C_associated_SNPs_64253 0 0 0 0 2 MSH4 chr1:76269598 5'GT 76269598 Upstream 100bp
chr12 102569424 102569424 1 + A C CESC 102569420 + 102569400 102569440 41 GAAGGTGTTGTAGCTCTTAGCACCACTGACATCAGTCCTGC GAAGGTGTTGTAGCTCTTAGCACCCCTGACATCAGTCCTGC < 41bp 0.753191538335508 0.364868300675671 0.16967183 0.113776535 prediction 0.506383076671016 Functional Loss - PARPBP ENSG00000185480 CDS Human protein_coding chr12:102569420 chr12:102569424 nonsynonymous SNV 0.959 0 25 hm5C_associated_SNPs_64255 0 0 1 0 1 PARPBP chr12:102569444 5'GT 102569444 Upstream 21bp
chrX 100081675 100081675 1 + G C rs138618143 100081671 + 100081651 100081691 41 CTCTGATGCAAGCTTCTATGCAGGGTGGAGTTCCAGCACCA CTCTGATGCAAGCTTCTATGCAGGCTGGAGTTCCAGCACCA < 41bp 0.79744451573433 0.544254412003925 0.89674807 0.4381203 prediction 0.506380207460811 Functional Loss - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100081671 chrX:100081675 nonsynonymous SNV 0.987 0 25 hm5C_associated_SNPs_64256 0 0 0 0 2 CSTF2 chrX:100081674 3'AG 100081674 Downstream 2bp
chrX 100081675 100081675 1 + G C rs138618143 100081671 + 100081651 100081691 41 CTCTGATGCAAGCTTCTATGCAGGGTGGAGTTCCAGCACCA CTCTGATGCAAGCTTCTATGCAGGCTGGAGTTCCAGCACCA < 41bp 0.79744451573433 0.544254412003925 0.89674807 0.4381203 prediction 0.506380207460811 Functional Loss - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100081671 chrX:100081675 nonsynonymous SNV 0.987 0 25 hm5C_associated_SNPs_64256 0 0 0 0 2 CSTF2 chrX:100081746 5'GT 100081746 Upstream 72bp
chr9 137712006 137712006 1 + G T KICH 137712004 + 137711984 137712024 41 TCATCGGTCCTCCGGGTGAACAGGGTGAGAAGGGCGACCGT TCATCGGTCCTCCGGGTGAACATGGTGAGAAGGGCGACCGT < 41bp 0.753189642210001 0.420082525219564 0.92291045 0.81298006 prediction 0.506379284420002 Functional Loss - COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137712004 chr9:137712006 nonsynonymous SNV 0.990 2 23 hm5C_associated_SNPs_64257 0 0 0 0 1 COL5A1 chr9:137712069 5'GT 137712069 Upstream 64bp
chr4 110885592 110885592 1 + G T UCEC 110885589 + 110885569 110885609 41 TTTTGCTGTTTGCCAATTCTCAAGATATTCGACACATGCAT TTTTGCTGTTTGCCAATTCTCAATATATTCGACACATGCAT < 41bp 0.753181925614943 0.372967671132014 0.55506176 0.075478554 prediction 0.506363851229886 Functional Loss - EGF ENSG00000138798 CDS Human protein_coding chr4:110885589 chr4:110885592 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_64260 0 0 0 0 1 EGF chr4:110885557 3'AG 110885557 Downstream 36bp
chr15 58834792 58834792 1 + C T UCEC 58834790 + 58834770 58834810 41 TTGGGTACAGCCTGGGTGCACACGTGTCAGGATTTGCCGGC TTGGGTACAGCCTGGGTGCACATGTGTCAGGATTTGCCGGC < 41bp 0.793991362850605 0.540810142379837 0.23187071 0.16450697 prediction 0.506362440941536 Functional Loss - LIPC ENSG00000166035 CDS Human protein_coding chr15:58834790 chr15:58834792 synonymous SNV . 0 23 hm5C_associated_SNPs_64261 0 0 1 0 2 LIPC chr15:58834733 3'AG 58834733 Downstream 60bp
chr15 58834792 58834792 1 + C T UCEC 58834790 + 58834770 58834810 41 TTGGGTACAGCCTGGGTGCACACGTGTCAGGATTTGCCGGC TTGGGTACAGCCTGGGTGCACATGTGTCAGGATTTGCCGGC < 41bp 0.793991362850605 0.540810142379837 0.23187071 0.16450697 prediction 0.506362440941536 Functional Loss - LIPC ENSG00000166035 CDS Human protein_coding chr15:58834790 chr15:58834792 synonymous SNV . 0 23 hm5C_associated_SNPs_64261 0 0 1 0 2 LIPC chr15:58834850 5'GT 58834850 Upstream 59bp
chr2 54365782 54365782 1 + G T STAD 54365780 + 54365760 54365800 41 TTTTTTCCTGAAACAGTATACAGAAGATGAAGCTAGGAAAA TTTTTTCCTGAAACAGTATACATAAGATGAAGCTAGGAAAA < 41bp 0.75317447574849 0.430212344996601 0.6569998 0.32559156 prediction 0.50634895149698 Functional Loss - ACYP2 ENSG00000170634 CDS Human protein_coding chr2:54365780 chr2:54365782 stopgain 0.941 1 23 hm5C_associated_SNPs_64262 0 0 1 0 1 ACYP2 chr2:54365776 3'AG 54365776 Downstream 7bp
chr10 71021022 71021022 1 + G C LUSC 71021021 + 71021001 71021041 41 CTCCGGACCAGGGGCATCTTCGAAACCAAGTTCCTGTCCCA CTCCGGACCAGGGGCATCTTCCAAACCAAGTTCCTGTCCCA < 41bp 0.753167962217121 0.433032692236048 0.84462285 0.8569573 prediction 0.506335924434243 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71021021 chr10:71021022 nonsynonymous SNV 0.939 2 22 hm5C_associated_SNPs_64265 0 0 0 1 1 HKDC1 chr10:71021050 5'GT 71021050 Upstream 29bp
chr19 4283143 4283143 1 + C T BLCA 4283141 + 4283121 4283161 41 ACCCCCTTCTGGGCAGAAGCCTCGGCAGAGCCGGATGCCCC ACCCCCTTCTGGGCAGAAGCCTTGGCAGAGCCGGATGCCCC < 41bp 0.787677290895712 0.534510908053834 0.30448702 0.23181319 prediction 0.506332765683756 Functional Loss - SHD ENSG00000105251 CDS Human protein_coding chr19:4283141 chr19:4283143 nonsynonymous SNV 0.571 2 23 hm5C_associated_SNPs_64266 0 0 0 0 2 SHD chr19:4283051 3'AG 4283051 Downstream 93bp
chr19 4283143 4283143 1 + C T BLCA 4283141 + 4283121 4283161 41 ACCCCCTTCTGGGCAGAAGCCTCGGCAGAGCCGGATGCCCC ACCCCCTTCTGGGCAGAAGCCTTGGCAGAGCCGGATGCCCC < 41bp 0.787677290895712 0.534510908053834 0.30448702 0.23181319 prediction 0.506332765683756 Functional Loss - SHD ENSG00000105251 CDS Human protein_coding chr19:4283141 chr19:4283143 nonsynonymous SNV 0.571 2 23 hm5C_associated_SNPs_64266 0 0 0 0 2 SHD chr19:4283239 5'GT 4283239 Upstream 97bp
chr16 81973536 81973536 1 + A T LUAD 81973532 + 81973512 81973552 41 GCCCTATCTGGGCTCCAACACAGGAGAAGGTGACATTTGAA GCCCTATCTGGGCTCCAACACAGGTGAAGGTGACATTTGAA < 41bp 0.753163478094351 0.429199754135021 0.65194476 0.8202815 prediction 0.506326956188702 Functional Loss - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81973532 chr16:81973536 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_64268 0 0 0 0 1 PLCG2 chr16:81973497 3'AG 81973497 Downstream 40bp
chr15 80465390 80465390 1 + C T BLCA 80465388 + 80465368 80465408 41 AGAAGTGGGAGTATGTCCCTCTCGGGCCATTCCTTGGGAAG AGAAGTGGGAGTATGTCCCTCTTGGGCCATTCCTTGGGAAG < 41bp 0.753161051897918 0.478798561167891 0.5119508 0.3889482 prediction 0.506322103795837 Functional Loss - FAH ENSG00000103876 CDS Human protein_coding chr15:80465388 chr15:80465390 synonymous SNV . 0 23 hm5C_associated_SNPs_64269 0 0 1 0 2 FAH chr15:80465356 3'AG 80465356 Downstream 35bp
chr15 80465390 80465390 1 + C T BLCA 80465388 + 80465368 80465408 41 AGAAGTGGGAGTATGTCCCTCTCGGGCCATTCCTTGGGAAG AGAAGTGGGAGTATGTCCCTCTTGGGCCATTCCTTGGGAAG < 41bp 0.753161051897918 0.478798561167891 0.5119508 0.3889482 prediction 0.506322103795837 Functional Loss - FAH ENSG00000103876 CDS Human protein_coding chr15:80465388 chr15:80465390 synonymous SNV . 0 23 hm5C_associated_SNPs_64269 0 0 1 0 2 FAH chr15:80465486 5'GT 80465486 Upstream 97bp
chr20 31877720 31877720 1 + A T LUSC 31877716 + 31877696 31877736 41 AGGTCATCACAGCTAACATCCTCCAGCTGCAGGTGAAGCCC AGGTCATCACAGCTAACATCCTCCTGCTGCAGGTGAAGCCC < 41bp 0.753154586914649 0.398673090263962 0.92833424 0.20121288 prediction 0.506309173829299 Functional Loss - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31877716 chr20:31877720 nonsynonymous SNV 0.940 2 25 hm5C_associated_SNPs_64271 0 0 0 0 2 BPIFB1 chr20:31877691 3'AG 31877691 Downstream 30bp
chr20 31877720 31877720 1 + A T LUSC 31877716 + 31877696 31877736 41 AGGTCATCACAGCTAACATCCTCCAGCTGCAGGTGAAGCCC AGGTCATCACAGCTAACATCCTCCTGCTGCAGGTGAAGCCC < 41bp 0.753154586914649 0.398673090263962 0.92833424 0.20121288 prediction 0.506309173829299 Functional Loss - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31877716 chr20:31877720 nonsynonymous SNV 0.940 2 25 hm5C_associated_SNPs_64271 0 0 0 0 2 BPIFB1 chr20:31877798 5'GT 31877798 Upstream 79bp
chr8 99146830 99146830 1 + G C SKCM 99146829 + 99146809 99146849 41 CTGGAAGTCCCAGAGGACCCCGGGTGACCCTTCTGAGAGCA CTGGAAGTCCCAGAGGACCCCCGGTGACCCTTCTGAGAGCA < 41bp 0.753150373098478 0.434006131834567 0.89441484 0.41189137 prediction 0.506300746196956 Functional Loss - POP1 ENSG00000104356 CDS Human protein_coding chr8:99146829 chr8:99146830 synonymous SNV . 0 22 hm5C_associated_SNPs_64272 0 0 0 0 1 POP1 chr8:99146887 5'GT 99146887 Upstream 58bp
chr1 150254974 150254974 1 + G C rs16835714 150254973 + 150254953 150254993 41 CGGAGGTGGGTAGATAGACCCGGAGAGACGGCGAAGGAGCT CGGAGGTGGGTAGATAGACCCCGAGAGACGGCGAAGGAGCT < 41bp 0.753139464177483 0.448843493774628 0.88136715 0.11260739 prediction 0.506278928354967 Functional Loss - CIART ENSG00000159208 UTR5 Human protein_coding chr1:150254973 chr1:150254974 . . 0 22 hm5C_associated_SNPs_64275 0 0 0 0 1 CIART chr1:150255028 5'GT 150255028 Upstream 55bp
chr19 46177957 46177957 1 + G T UCEC 46177954 + 46177934 46177974 41 CCCTAGGCGGCTACATTGCACTAGAAACTATATCCACATCA CCCTAGGCGGCTACATTGCACTATAAACTATATCCACATCA < 41bp 0.753137574735782 0.356768094084045 0.028107852 0.012956768 prediction 0.506275149471564 Functional Loss - GIPR ENSG00000010310 CDS Human protein_coding chr19:46177954 chr19:46177957 nonsynonymous SNV 0.945 4 24 hm5C_associated_SNPs_64278 0 0 1 0 1 GIPR chr19:46177940 3'AG 46177940 Downstream 18bp
chr11 64854471 64854471 1 + C T SKCM 64854469 + 64854449 64854489 41 AGCCTTCTACAGCCAGGCCCCCCGGCCCCCAGCTTCCCCAG AGCCTTCTACAGCCAGGCCCCCTGGCCCCCAGCTTCCCCAG < 41bp 0.753135250554837 0.497347228104961 0.5358523 0.23062912 prediction 0.506270501109674 Functional Loss - ZFPL1 ENSG00000162300 CDS Human protein_coding chr11:64854469 chr11:64854471 nonsynonymous SNV 0.024 2 23 hm5C_associated_SNPs_64279 0 0 1 0 2 ZFPL1 chr11:64854400 3'AG 64854400 Downstream 72bp
chr11 64854471 64854471 1 + C T SKCM 64854469 + 64854449 64854489 41 AGCCTTCTACAGCCAGGCCCCCCGGCCCCCAGCTTCCCCAG AGCCTTCTACAGCCAGGCCCCCTGGCCCCCAGCTTCCCCAG < 41bp 0.753135250554837 0.497347228104961 0.5358523 0.23062912 prediction 0.506270501109674 Functional Loss - ZFPL1 ENSG00000162300 CDS Human protein_coding chr11:64854469 chr11:64854471 nonsynonymous SNV 0.024 2 23 hm5C_associated_SNPs_64279 0 0 1 0 2 ZFPL1 chr11:64854546 5'GT 64854546 Upstream 76bp
chr14 105397112 105397112 1 + A T LUAD 105397108 + 105397088 105397128 41 CTTGGCGCTGTCATCTATAACTGCAGCCACCTGGCCCAAGA CTTGGCGCTGTCATCTATAACTGCTGCCACCTGGCCCAAGA < 41bp 0.875080679058557 0.621963976341024 0.34074885 0.35283768 prediction 0.506233405435068 Functional Loss - PLD4 ENSG00000166428 CDS Human protein_coding chr14:105397108 chr14:105397112 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_64282 0 0 0 0 1 PLD4 chr14:105397079 3'AG 105397079 Downstream 34bp
chr18 21396406 21396406 1 + G T BLCA 21396403 + 21396383 21396423 41 CTCCATGTGCAGTGGGCCCTCGGGAGTGTGCCAGTGCCGAG CTCCATGTGCAGTGGGCCCTCGGTAGTGTGCCAGTGCCGAG < 41bp 0.885804991247549 0.632690019916061 0.9048327 0.2248877 prediction 0.506229942662974 Functional Loss - LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21396403 chr18:21396406 nonsynonymous SNV 0.009 3 24 hm5C_associated_SNPs_64283 0 0 1 0 1 LAMA3 chr18:21396451 5'GT 21396451 Upstream 46bp
chr20 33296591 33296591 1 + C T UCEC 33296589 + 33296569 33296609 41 TCTTCAGCACCCCCTCGCCCCCCGAAGACCCCGACTGCCCC TCTTCAGCACCCCCTCGCCCCCTGAAGACCCCGACTGCCCC < 41bp 0.753102123320448 0.494093046934408 0.10061762 0.031144977 prediction 0.506204246640896 Functional Loss - TP53INP2 ENSG00000078804 CDS Human protein_coding chr20:33296589 chr20:33296591 synonymous SNV . 0 23 hm5C_associated_SNPs_64288 0 0 0 0 2 TP53INP2 chr20:33296495 3'AG 33296495 Downstream 97bp
chr20 33296591 33296591 1 + C T UCEC 33296589 + 33296569 33296609 41 TCTTCAGCACCCCCTCGCCCCCCGAAGACCCCGACTGCCCC TCTTCAGCACCCCCTCGCCCCCTGAAGACCCCGACTGCCCC < 41bp 0.753102123320448 0.494093046934408 0.10061762 0.031144977 prediction 0.506204246640896 Functional Loss - TP53INP2 ENSG00000078804 CDS Human protein_coding chr20:33296589 chr20:33296591 synonymous SNV . 0 23 hm5C_associated_SNPs_64288 0 0 0 0 2 TP53INP2 chr20:33296667 5'GT 33296667 Upstream 77bp
chr9 117405501 117405501 1 + C T STAD 117405499 + 117405479 117405519 41 GCTCCCTCAGGCAATGGGGACACGACACACGAACTCTCCGA GCTCCCTCAGGCAATGGGGACATGACACACGAACTCTCCGA < 41bp 0.772202861569647 0.519107773068869 0.2641312 0.35814998 prediction 0.506190177001555 Functional Loss - TMEM268 ENSG00000157693 CDS Human protein_coding chr9:117405499 chr9:117405501 stopgain 0.519 0 23 hm5C_associated_SNPs_64289 0 0 1 0 1 TMEM268 chr9:117405414 3'AG 117405414 Downstream 88bp
chr1 26878169 26878169 1 + G T LUSC 26878167 + 26878147 26878187 41 AGGGCAAGCTCTATCTCATTCTGGACTTCCTGCGTGGTGGG AGGGCAAGCTCTATCTCATTCTTGACTTCCTGCGTGGTGGG < 41bp 0.887863640706765 0.634768973344074 0.37541166 0.10978791 prediction 0.506189334725381 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26878167 chr1:26878169 synonymous SNV . 0 23 hm5C_associated_SNPs_64290 0 0 1 0 2 RPS6KA1 chr1:26878135 3'AG 26878135 Downstream 35bp
chr1 26878169 26878169 1 + G T LUSC 26878167 + 26878147 26878187 41 AGGGCAAGCTCTATCTCATTCTGGACTTCCTGCGTGGTGGG AGGGCAAGCTCTATCTCATTCTTGACTTCCTGCGTGGTGGG < 41bp 0.887863640706765 0.634768973344074 0.37541166 0.10978791 prediction 0.506189334725381 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26878167 chr1:26878169 synonymous SNV . 0 23 hm5C_associated_SNPs_64290 0 0 1 0 2 RPS6KA1 chr1:26878214 5'GT 26878214 Upstream 46bp
chr1 26152864 26152864 1 + G T UCEC 26152861 + 26152841 26152881 41 CCTACCCTGGCTGACATCGCCTGGATTGCTGCGGATGAAGA CCTACCCTGGCTGACATCGCCTGTATTGCTGCGGATGAAGA < 41bp 0.851555909963448 0.598472596463625 0.33500656 0.10864073 prediction 0.506166626999645 Functional Loss - MTFR1L ENSG00000117640 CDS Human protein_coding chr1:26152861 chr1:26152864 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_64291 0 0 1 0 2 MTFR1L chr1:26152793 3'AG 26152793 Downstream 72bp
chr1 26152864 26152864 1 + G T UCEC 26152861 + 26152841 26152881 41 CCTACCCTGGCTGACATCGCCTGGATTGCTGCGGATGAAGA CCTACCCTGGCTGACATCGCCTGTATTGCTGCGGATGAAGA < 41bp 0.851555909963448 0.598472596463625 0.33500656 0.10864073 prediction 0.506166626999645 Functional Loss - MTFR1L ENSG00000117640 CDS Human protein_coding chr1:26152861 chr1:26152864 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_64291 0 0 1 0 2 MTFR1L chr1:26152902 5'GT 26152902 Upstream 39bp
chr2 27246285 27246285 1 + C T rs10865456 27246283 + 27246263 27246303 41 AGTTCCAGGCCAAACTAGAGCACGAATACATCCACAACTTC AGTTCCAGGCCAAACTAGAGCATGAATACATCCACAACTTC < 41bp 0.79964936092069 0.546577353027341 0.10196558 0.080385685 prediction 0.506144015786696 Functional Loss - MAPRE3 ENSG00000084764 CDS Human protein_coding chr2:27246283 chr2:27246285 synonymous SNV . 0 23 hm5C_associated_SNPs_64295 0 0 0 0 2 MAPRE3 chr2:27246200 3'AG 27246200 Downstream 86bp
chr2 27246285 27246285 1 + C T rs10865456 27246283 + 27246263 27246303 41 AGTTCCAGGCCAAACTAGAGCACGAATACATCCACAACTTC AGTTCCAGGCCAAACTAGAGCATGAATACATCCACAACTTC < 41bp 0.79964936092069 0.546577353027341 0.10196558 0.080385685 prediction 0.506144015786696 Functional Loss - MAPRE3 ENSG00000084764 CDS Human protein_coding chr2:27246283 chr2:27246285 synonymous SNV . 0 23 hm5C_associated_SNPs_64295 0 0 0 0 2 MAPRE3 chr2:27246345 5'GT 27246345 Upstream 61bp
chr11 65835515 65835515 1 + C T LUSC 65835513 + 65835493 65835533 41 ACCCACATTTATGACATGTCCACGGTGAGTACTTGGAGGAT ACCCACATTTATGACATGTCCATGGTGAGTACTTGGAGGAT < 41bp 0.753071089764975 0.487300543824898 0.036758035 0.046400666 prediction 0.506142179529951 Functional Loss - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65835513 chr11:65835515 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_64296 0 0 1 0 2 SF3B2 chr11:65835417 3'AG 65835417 Downstream 99bp
chr11 65835515 65835515 1 + C T LUSC 65835513 + 65835493 65835533 41 ACCCACATTTATGACATGTCCACGGTGAGTACTTGGAGGAT ACCCACATTTATGACATGTCCATGGTGAGTACTTGGAGGAT < 41bp 0.753071089764975 0.487300543824898 0.036758035 0.046400666 prediction 0.506142179529951 Functional Loss - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65835513 chr11:65835515 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_64296 0 0 1 0 2 SF3B2 chr11:65835516 5'GT 65835516 Upstream 2bp
chr7 156450264 156450264 1 + C T KIRC 156450262 + 156450242 156450282 41 TTTCATGCTCCCATGTGTTCCACAAAGTAAGTCCACCCCTC TTTCATGCTCCCATGTGTTCCATAAAGTAAGTCCACCCCTC < 41bp 0.786145789193864 0.533076613191273 0.351615 0.636515 prediction 0.50613835200518 Functional Loss - RNF32 ENSG00000105982 CDS Human protein_coding chr7:156450262 chr7:156450264 synonymous SNV . 0 23 hm5C_associated_SNPs_64297 0 0 0 0 2 RNF32 chr7:156450235 3'AG 156450235 Downstream 30bp
chr7 156450264 156450264 1 + C T KIRC 156450262 + 156450242 156450282 41 TTTCATGCTCCCATGTGTTCCACAAAGTAAGTCCACCCCTC TTTCATGCTCCCATGTGTTCCATAAAGTAAGTCCACCCCTC < 41bp 0.786145789193864 0.533076613191273 0.351615 0.636515 prediction 0.50613835200518 Functional Loss - RNF32 ENSG00000105982 CDS Human protein_coding chr7:156450262 chr7:156450264 synonymous SNV . 0 23 hm5C_associated_SNPs_64297 0 0 0 0 2 RNF32 chr7:156450267 5'GT 156450267 Upstream 4bp
chr11 2411680 2411680 1 + C T HNSC 2411678 + 2411658 2411698 41 TCCTGGGTGTGGCCCTGTGGCTCCGCCATGACCCGCAGACC TCCTGGGTGTGGCCCTGTGGCTTCGCCATGACCCGCAGACC < 41bp 0.753050431937387 0.488607866764692 0.22533837 0.14377674 prediction 0.506100863874774 Functional Loss - CD81 ENSG00000110651 CDS Human protein_coding chr11:2411678 chr11:2411680 synonymous SNV . 0 23 hm5C_associated_SNPs_64298 0 0 1 0 2 CD81 chr11:2411642 3'AG 2411642 Downstream 39bp
chr11 2411680 2411680 1 + C T HNSC 2411678 + 2411658 2411698 41 TCCTGGGTGTGGCCCTGTGGCTCCGCCATGACCCGCAGACC TCCTGGGTGTGGCCCTGTGGCTTCGCCATGACCCGCAGACC < 41bp 0.753050431937387 0.488607866764692 0.22533837 0.14377674 prediction 0.506100863874774 Functional Loss - CD81 ENSG00000110651 CDS Human protein_coding chr11:2411678 chr11:2411680 synonymous SNV . 0 23 hm5C_associated_SNPs_64298 0 0 1 0 2 CD81 chr11:2411756 5'GT 2411756 Upstream 77bp
chr16 67916009 67916009 1 + C T SKCM 67916007 + 67915987 67916027 41 TGAGATCAAGAAGACAGTCCCTCCATGTGAGTTTTGCATGC TGAGATCAAGAAGACAGTCCCTTCATGTGAGTTTTGCATGC < 41bp 0.753049048683973 0.466277328946938 0.966082 0.12061167 prediction 0.506098097367946 Functional Loss - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67916007 chr16:67916009 nonsynonymous SNV 0.972 1 23 hm5C_associated_SNPs_64300 0 0 1 0 1 EDC4 chr16:67916012 5'GT 67916012 Upstream 4bp
chr8 118540982 118540982 1 + G T CESC 118540979 + 118540959 118540999 41 CGCCAACTTTCAGTTCTCTTCAGGAAGCTGAGATTGGTATA CGCCAACTTTCAGTTCTCTTCAGTAAGCTGAGATTGGTATA < 41bp 0.90868663041782 0.65563998898212 0.31558597 0.10577685 prediction 0.5060932828714 Functional Loss - MED30 ENSG00000164758 CDS Human protein_coding chr8:118540979 chr8:118540982 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_64302 0 0 1 0 2 MED30 chr8:118540890 3'AG 118540890 Downstream 93bp
chr8 118540982 118540982 1 + G T CESC 118540979 + 118540959 118540999 41 CGCCAACTTTCAGTTCTCTTCAGGAAGCTGAGATTGGTATA CGCCAACTTTCAGTTCTCTTCAGTAAGCTGAGATTGGTATA < 41bp 0.90868663041782 0.65563998898212 0.31558597 0.10577685 prediction 0.5060932828714 Functional Loss - MED30 ENSG00000164758 CDS Human protein_coding chr8:118540979 chr8:118540982 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_64302 0 0 1 0 2 MED30 chr8:118541048 5'GT 118541048 Upstream 67bp
chr7 100608822 100608822 1 - C A UCEC 100608825 - 100608805 100608845 41 AGTCGATGGCGTTGTCCACGCCCGACGTGCATTTGGTGACA AGTCGATGGCGTTGTCCACGCCCTACGTGCATTTGGTGACA < 41bp 0.753044663741359 0.36746393412285 0.31746185 0.08867535 prediction 0.506089327482718 Functional Loss - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100608825 chr7:100608822 stopgain . 0 24 hm5C_associated_SNPs_64303 0 0 0 0 1 MUC3A chr7:100608865 3'AG 100608865 Downstream 44bp
chr19 13867062 13867062 1 + C T UCEC 13867060 + 13867040 13867080 41 CCACCCGCTTCGGGAGCGGGCTCGGAAGCTGTCACAGGGCA CCACCCGCTTCGGGAGCGGGCTTGGAAGCTGTCACAGGGCA < 41bp 0.753042513117314 0.48897591469966 0.17742568 0.13946682 prediction 0.506085026234628 Functional Loss - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13867060 chr19:13867062 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_64304 0 0 1 0 2 CCDC130 chr19:13867011 3'AG 13867011 Downstream 52bp
chr19 13867062 13867062 1 + C T UCEC 13867060 + 13867040 13867080 41 CCACCCGCTTCGGGAGCGGGCTCGGAAGCTGTCACAGGGCA CCACCCGCTTCGGGAGCGGGCTTGGAAGCTGTCACAGGGCA < 41bp 0.753042513117314 0.48897591469966 0.17742568 0.13946682 prediction 0.506085026234628 Functional Loss - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13867060 chr19:13867062 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_64304 0 0 1 0 2 CCDC130 chr19:13867093 5'GT 13867093 Upstream 32bp
chr3 112993496 112993496 1 + G C LUSC 112993495 + 112993475 112993515 41 GCATGAGGGCAGTGGCCGGGCGCCAATCCTCTACTATGTGG GCATGAGGGCAGTGGCCGGGCCCCAATCCTCTACTATGTGG < 41bp 0.753037778505599 0.443888469150453 0.08585927 0.06409705 prediction 0.506075557011198 Functional Loss - BOC ENSG00000144857 CDS Human protein_coding chr3:112993495 chr3:112993496 synonymous SNV . 0 22 hm5C_associated_SNPs_64305 0 0 0 0 1 BOC chr3:112993529 5'GT 112993529 Upstream 34bp
chr1 55166843 55166843 1 + T C rs199663218 55166842 + 55166822 55166862 41 AAGGTGAAGGCCCTCCTGCCCTCCATGGTGAAGGGCCTGAA AAGGTGAAGGCCCTCCTGCCCCCCATGGTGAAGGGCCTGAA < 41bp 0.75303734772704 0.485294047817634 0.93395424 0.015906572 prediction 0.506074695454081 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55166842 chr1:55166843 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_64306 0 0 0 0 1 MROH7 chr1:55166816 3'AG 55166816 Downstream 28bp
chr13 113030779 113030779 1 + G T STAD 113030776 + 113030756 113030796 41 GCAAGAAACTGAGCTCCGGCCGAGAACCGTGATTCCAGGTA GCAAGAAACTGAGCTCCGGCCGATAACCGTGATTCCAGGTA < 41bp 0.906567647891941 0.65353057740849 0.6474644 0.29953557 prediction 0.506074140966903 Functional Loss - SPACA7 ENSG00000153498 CDS Human protein_coding chr13:113030776 chr13:113030779 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_64307 0 0 0 0 1 SPACA7 chr13:113030793 5'GT 113030793 Upstream 15bp
chr3 12611627 12611627 1 + C T KIRC 12611625 + 12611605 12611645 41 GTGCTGTGGGCACCATGGCCCACAGTGTGCCCTCCCCAGCT GTGCTGTGGGCACCATGGCCCATAGTGTGCCCTCCCCAGCT < 41bp 0.753035031740675 0.498717443235194 0.078588665 0.16117206 prediction 0.506070063481349 Functional Loss - MKRN2 ENSG00000075975 CDS Human protein_coding chr3:12611625 chr3:12611627 synonymous SNV . 0 23 hm5C_associated_SNPs_64308 0 0 0 0 1 MKRN2 chr3:12611570 3'AG 12611570 Downstream 58bp
chr2 220047026 220047026 1 + A C rs140249719 220047022 + 220047002 220047042 41 GACCAGTGGAGACACTGAGCCCCGAGACAGTGAGTGGTGGC GACCAGTGGAGACACTGAGCCCCGCGACAGTGAGTGGTGGC < 41bp 0.753031449142187 0.346623215804278 0.24615654 0.17800084 prediction 0.506062898284374 Functional Loss - RETREG2 ENSG00000144567 CDS Human protein_coding chr2:220047022 chr2:220047026 nonsynonymous SNV 0.791 1 25 hm5C_associated_SNPs_64309 0 0 1 0 1 RETREG2 chr2:220047030 5'GT 220047030 Upstream 5bp
chr5 7875450 7875450 1 + G T LUAD 7875448 + 7875428 7875468 41 GACTTCAAGAGCTTGGAGCCCGGCATTTCTATGACACTGGA GACTTCAAGAGCTTGGAGCCCGTCATTTCTATGACACTGGA < 41bp 0.871704939912212 0.618678567722043 0.16310084 0.027127355 prediction 0.506052744380338 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7875448 chr5:7875450 synonymous SNV . 0 23 hm5C_associated_SNPs_64311 0 0 1 4 1 MTRR chr5:7875371 3'AG 7875371 Downstream 80bp
chr3 186450367 186450367 1 + G T HNSC 186450365 + 186450345 186450385 41 TACCCACCAACAGCCCAGAGCTGGAGGAGACACTGACTCAC TACCCACCAACAGCCCAGAGCTTGAGGAGACACTGACTCAC < 41bp 0.88743435782586 0.634408807459252 0.58001536 0.26359582 prediction 0.506051100733217 Functional Loss - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186450365 chr3:186450367 synonymous SNV . 0 23 hm5C_associated_SNPs_64312 0 0 0 0 2 KNG1 chr3:186450291 3'AG 186450291 Downstream 77bp
chr3 186450367 186450367 1 + G T HNSC 186450365 + 186450345 186450385 41 TACCCACCAACAGCCCAGAGCTGGAGGAGACACTGACTCAC TACCCACCAACAGCCCAGAGCTTGAGGAGACACTGACTCAC < 41bp 0.88743435782586 0.634408807459252 0.58001536 0.26359582 prediction 0.506051100733217 Functional Loss - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186450365 chr3:186450367 synonymous SNV . 0 23 hm5C_associated_SNPs_64312 0 0 0 0 2 KNG1 chr3:186450463 5'GT 186450463 Upstream 97bp
chr19 41596459 41596459 1 + C T SKCM 41596457 + 41596437 41596477 41 AGCTTCCAGTTCACGGCAACCTCCACGGGGCAGGTAACTGG AGCTTCCAGTTCACGGCAACCTTCACGGGGCAGGTAACTGG < 41bp 0.807558070693554 0.554532765371695 0.9438913 0.084421724 prediction 0.506050610643719 Functional Loss - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41596457 chr19:41596459 nonsynonymous SNV 0.033 0 23 hm5C_associated_SNPs_64313 0 0 0 0 1 CYP2A13 chr19:41596469 5'GT 41596469 Upstream 11bp
chr12 117290473 117290473 1 + A C UCEC 117290472 + 117290452 117290492 41 CAGATGCTGTTGAAGGGGCACAAGAAATTGGAGCTGGAGAA CAGATGCTGTTGAAGGGGCACCAGAAATTGGAGCTGGAGAA < 41bp 0.753023176265655 0.496263128685917 0.21025413 0.13188702 prediction 0.506046352531309 Functional Loss - RNFT2 ENSG00000135119 CDS Human protein_coding chr12:117290472 chr12:117290473 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_64314 0 0 1 0 1 RNFT2 chr12:117290455 3'AG 117290455 Downstream 19bp
chr18 12014356 12014356 1 + G T LUSC 12014353 + 12014333 12014373 41 TTCTGCAATGGCCAGCGGCTCCGGGTCTCCGGGGAGACAGG TTCTGCAATGGCCAGCGGCTCCGTGTCTCCGGGGAGACAGG < 41bp 0.753015412913134 0.347280175253417 0.8906966 0.048534006 prediction 0.506030825826267 Functional Loss - IMPA2 ENSG00000141401 CDS Human protein_coding chr18:12014353 chr18:12014356 synonymous SNV . 0 24 hm5C_associated_SNPs_64316 0 0 1 0 2 IMPA2 chr18:12014264 3'AG 12014264 Downstream 93bp
chr18 12014356 12014356 1 + G T LUSC 12014353 + 12014333 12014373 41 TTCTGCAATGGCCAGCGGCTCCGGGTCTCCGGGGAGACAGG TTCTGCAATGGCCAGCGGCTCCGTGTCTCCGGGGAGACAGG < 41bp 0.753015412913134 0.347280175253417 0.8906966 0.048534006 prediction 0.506030825826267 Functional Loss - IMPA2 ENSG00000141401 CDS Human protein_coding chr18:12014353 chr18:12014356 synonymous SNV . 0 24 hm5C_associated_SNPs_64316 0 0 1 0 2 IMPA2 chr18:12014372 5'GT 12014372 Upstream 17bp
chr15 41857299 41857299 1 + G T LUAD 41857296 + 41857276 41857316 41 CGCTAGTGTGGCCTGGATGCCAGGTGCTGATGGCCGAGCTC CGCTAGTGTGGCCTGGATGCCAGTTGCTGATGGCCGAGCTC < 41bp 0.753012033716745 0.339062377377441 0.8164103 0.12869191 prediction 0.506024067433489 Functional Loss - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41857296 chr15:41857299 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_64318 0 0 1 0 2 TYRO3 chr15:41857224 3'AG 41857224 Downstream 76bp
chr15 41857299 41857299 1 + G T LUAD 41857296 + 41857276 41857316 41 CGCTAGTGTGGCCTGGATGCCAGGTGCTGATGGCCGAGCTC CGCTAGTGTGGCCTGGATGCCAGTTGCTGATGGCCGAGCTC < 41bp 0.753012033716745 0.339062377377441 0.8164103 0.12869191 prediction 0.506024067433489 Functional Loss - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41857296 chr15:41857299 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_64318 0 0 1 0 2 TYRO3 chr15:41857339 5'GT 41857339 Upstream 41bp
chr10 114044408 114044408 1 + C T HNSC 114044406 + 114044386 114044426 41 GGCTGTGTTACAATGGGGTCCACGAAGGAGGTTACTACCAA GGCTGTGTTACAATGGGGTCCATGAAGGAGGTTACTACCAA < 41bp 0.810603625010927 0.557594527219978 0.109424114 0.2517641 prediction 0.506018195581899 Functional Loss - TECTB ENSG00000119913 CDS Human protein_coding chr10:114044406 chr10:114044408 synonymous SNV . 0 23 hm5C_associated_SNPs_64319 0 0 0 0 1 TECTB chr10:114044483 5'GT 114044483 Upstream 76bp
chr1 158812131 158812131 1 + A T COAD 158812127 + 158812107 158812147 41 AGTTCCAAGGCGTTGCCTGTCTAGACAAACTAATAGAACTT AGTTCCAAGGCGTTGCCTGTCTAGTCAAACTAATAGAACTT < 41bp 0.843098498691011 0.590095911886559 0.112098485 0.04560259 prediction 0.506005173608904 Functional Loss - MNDA ENSG00000163563 CDS Human protein_coding chr1:158812127 chr1:158812131 nonsynonymous SNV 0.003 2 25 hm5C_associated_SNPs_64322 0 0 0 0 1 MNDA chr1:158812208 5'GT 158812208 Upstream 78bp
chr1 116932328 116932328 1 + C T COAD 116932326 + 116932306 116932346 41 GAAGGTTTGCTGGCCACTGTCACGGTAAGAGGCAGGTGATG GAAGGTTTGCTGGCCACTGTCATGGTAAGAGGCAGGTGATG < 41bp 0.770722423790665 0.517730980164136 0.80408007 0.8967782 prediction 0.50598288725306 Functional Loss - ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116932326 chr1:116932328 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_64323 0 0 1 0 1 ATP1A1 chr1:116932329 5'GT 116932329 Upstream 2bp
chr1 15753677 15753677 1 + G T LUSC 15753675 + 15753655 15753695 41 ATCTTCCGCAAGGCGGCGGCCGGGGAGCTTCAGGAGGACAG ATCTTCCGCAAGGCGGCGGCCGTGGAGCTTCAGGAGGACAG < 41bp 0.888750048353542 0.635781867627672 0.9133066 0.48105958 prediction 0.505936361451741 Functional Loss - EFHD2 ENSG00000142634 CDS Human protein_coding chr1:15753675 chr1:15753677 nonsynonymous SNV 0.672 3 23 hm5C_associated_SNPs_64328 0 0 1 0 1 EFHD2 chr1:15753646 3'AG 15753646 Downstream 32bp
chr14 77685232 77685232 1 + C T LUSC 77685230 + 77685210 77685250 41 AGTGGATGAATGCTTCCAGTCTCGGAACACCGTCCTCCAGG AGTGGATGAATGCTTCCAGTCTTGGAACACCGTCCTCCAGG < 41bp 0.786367178327205 0.533402036762582 0.45726728 0.094870955 prediction 0.505930283129246 Functional Loss - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77685230 chr14:77685232 nonsynonymous SNV 0.920 3 23 hm5C_associated_SNPs_64329 0 0 0 0 2 TMEM63C chr14:77685144 3'AG 77685144 Downstream 89bp
chr14 77685232 77685232 1 + C T LUSC 77685230 + 77685210 77685250 41 AGTGGATGAATGCTTCCAGTCTCGGAACACCGTCCTCCAGG AGTGGATGAATGCTTCCAGTCTTGGAACACCGTCCTCCAGG < 41bp 0.786367178327205 0.533402036762582 0.45726728 0.094870955 prediction 0.505930283129246 Functional Loss - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77685230 chr14:77685232 nonsynonymous SNV 0.920 3 23 hm5C_associated_SNPs_64329 0 0 0 0 2 TMEM63C chr14:77685306 5'GT 77685306 Upstream 75bp
chr17 16687037 16687037 1 + C T rs144335073 16687035 + 16687015 16687055 41 GCGTACTGACTTATTGCTGGCTCGAAAGTGCATGTAAGGAG GCGTACTGACTTATTGCTGGCTTGAAAGTGCATGTAAGGAG < 41bp 0.768954684348047 0.515992481514032 0.099490136 0.03241557 prediction 0.50592440566803 Functional Loss - CCDC144A;USP32P1 ENSG00000170160;ENSG00000266302 UTR3 Human other chr17:16687035 chr17:16687037 . . 0 23 hm5C_associated_SNPs_64331 0 0 0 0 1 CCDC144A;USP32P1 chr17:16687047 5'GT 16687047 Upstream 11bp
chr7 149556614 149556614 1 + A C rs149503580 149556610 + 149556590 149556630 41 AAAGTGGGGGAAAGGTCGTCCTCCAGGTGAGTGTAAACCTA AAAGTGGGGGAAAGGTCGTCCTCCCGGTGAGTGTAAACCTA < 41bp 0.752958846997882 0.318945242630704 0.92315286 0.07113719 prediction 0.505917693995764 Functional Loss - ZNF862 ENSG00000106479 CDS Human protein_coding chr7:149556610 chr7:149556614 synonymous SNV . 0 25 hm5C_associated_SNPs_64332 0 0 0 0 1 ZNF862 chr7:149556615 5'GT 149556615 Upstream 2bp
chr12 121098057 121098057 1 + G T LUSC 121098055 + 121098035 121098075 41 AGGATGGCTACATCAACTGCCGGGATCTGGGCAACTGCATG AGGATGGCTACATCAACTGCCGTGATCTGGGCAACTGCATG < 41bp 0.752958383973939 0.411726808276866 0.6730988 0.14670154 prediction 0.505916767947877 Functional Loss - CABP1 ENSG00000157782 CDS Human protein_coding chr12:121098055 chr12:121098057 synonymous SNV . 0 23 hm5C_associated_SNPs_64333 0 0 0 0 2 CABP1 chr12:121097999 3'AG 121097999 Downstream 59bp
chr12 121098057 121098057 1 + G T LUSC 121098055 + 121098035 121098075 41 AGGATGGCTACATCAACTGCCGGGATCTGGGCAACTGCATG AGGATGGCTACATCAACTGCCGTGATCTGGGCAACTGCATG < 41bp 0.752958383973939 0.411726808276866 0.6730988 0.14670154 prediction 0.505916767947877 Functional Loss - CABP1 ENSG00000157782 CDS Human protein_coding chr12:121098055 chr12:121098057 synonymous SNV . 0 23 hm5C_associated_SNPs_64333 0 0 0 0 2 CABP1 chr12:121098142 5'GT 121098142 Upstream 86bp
chr20 43034745 43034745 1 + G T LUAD 43034742 + 43034722 43034762 41 ACCTCAACGCGCCCAACAGCCTGGGTGTCAGCGCCCTGTGT ACCTCAACGCGCCCAACAGCCTGTGTGTCAGCGCCCTGTGT < 41bp 0.918009501786616 0.665058426575938 0.73359716 0.04967016 prediction 0.505902150421356 Functional Loss - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43034742 chr20:43034745 nonsynonymous SNV 0.962 5 24 hm5C_associated_SNPs_64334 0 0 0 0 1 HNF4A chr20:43034698 3'AG 43034698 Downstream 48bp
chr16 53504378 53504378 1 + A T LUSC 53504374 + 53504354 53504394 41 CAGGCACAAGCTGTGACAGGCTCCATCCAGCCCCTCAGTGC CAGGCACAAGCTGTGACAGGCTCCTTCCAGCCCCTCAGTGC < 41bp 0.752948841005175 0.401377243788257 0.8448528 0.09110671 prediction 0.50589768201035 Functional Loss - RBL2 ENSG00000103479 CDS Human protein_coding chr16:53504374 chr16:53504378 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_64335 0 0 1 0 1 RBL2 chr16:53504295 3'AG 53504295 Downstream 84bp
chr1 32690050 32690050 1 + G T SARC 32690048 + 32690028 32690068 41 CTCACTGGCTCAGCTGACAACAGCTGTCGTCTCTGGGACTG CTCACTGGCTCAGCTGACAACATCTGTCGTCTCTGGGACTG < 41bp 0.75294699628158 0.422837259686073 0.35676292 0.092094034 prediction 0.50589399256316 Functional Loss - EIF3I ENSG00000084623 CDS Human protein_coding chr1:32690048 chr1:32690050 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_64336 0 0 1 0 2 EIF3I chr1:32690011 3'AG 32690011 Downstream 40bp
chr1 32690050 32690050 1 + G T SARC 32690048 + 32690028 32690068 41 CTCACTGGCTCAGCTGACAACAGCTGTCGTCTCTGGGACTG CTCACTGGCTCAGCTGACAACATCTGTCGTCTCTGGGACTG < 41bp 0.75294699628158 0.422837259686073 0.35676292 0.092094034 prediction 0.50589399256316 Functional Loss - EIF3I ENSG00000084623 CDS Human protein_coding chr1:32690048 chr1:32690050 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_64336 0 0 1 0 2 EIF3I chr1:32690076 5'GT 32690076 Upstream 27bp
chr11 93821993 93821993 1 + G T SARC 93821991 + 93821971 93822011 41 GGTCAGATCTATGAGGTCAGCAGCTGTGACAACAGGGACCC GGTCAGATCTATGAGGTCAGCATCTGTGACAACAGGGACCC < 41bp 0.752943566467225 0.396453890937908 0.77648544 0.20244646 prediction 0.50588713293445 Functional Loss - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93821991 chr11:93821993 nonsynonymous SNV 0.968 1 23 hm5C_associated_SNPs_64339 0 0 0 0 1 HEPHL1 chr11:93821921 3'AG 93821921 Downstream 73bp
chr1 101186049 101186049 1 + G C HNSC 101186048 + 101186028 101186068 41 GCAGCTCAAGCTTTTAAAATCGAGACCACCCCAGAATCTAG GCAGCTCAAGCTTTTAAAATCCAGACCACCCCAGAATCTAG < 41bp 0.752934745834579 0.456071905458316 0.56706756 0.13418818 prediction 0.505869491669158 Functional Loss - VCAM1 ENSG00000162692 CDS Human protein_coding chr1:101186048 chr1:101186049 nonsynonymous SNV 0.364 1 22 hm5C_associated_SNPs_64342 0 0 0 0 2 VCAM1 chr1:101186032 3'AG 101186032 Downstream 18bp
chr1 101186049 101186049 1 + G C HNSC 101186048 + 101186028 101186068 41 GCAGCTCAAGCTTTTAAAATCGAGACCACCCCAGAATCTAG GCAGCTCAAGCTTTTAAAATCCAGACCACCCCAGAATCTAG < 41bp 0.752934745834579 0.456071905458316 0.56706756 0.13418818 prediction 0.505869491669158 Functional Loss - VCAM1 ENSG00000162692 CDS Human protein_coding chr1:101186048 chr1:101186049 nonsynonymous SNV 0.364 1 22 hm5C_associated_SNPs_64342 0 0 0 0 2 VCAM1 chr1:101186121 5'GT 101186121 Upstream 73bp
chr12 10133293 10133293 1 + G T UCEC 10133291 + 10133271 10133311 41 GTAAAATGGCCTGTGCTGCTCAGAATGCCAGCCTGTTGAAG GTAAAATGGCCTGTGCTGCTCATAATGCCAGCCTGTTGAAG < 41bp 0.752929404435139 0.41091128348447 0.3120764 0.08256072 prediction 0.505858808870277 Functional Loss - CLEC12A ENSG00000172322 CDS Human protein_coding chr12:10133291 chr12:10133293 nonsynonymous SNV 0.806 0 23 hm5C_associated_SNPs_64343 0 0 0 0 1 CLEC12A chr12:10133332 5'GT 10133332 Upstream 40bp
chr17 6927547 6927547 1 + C T UCEC 6927545 + 6927525 6927565 41 GCGCCTCTCTCCAGCCACTGCACCAGCAGTCCTAGCGGCCG GCGCCTCTCTCCAGCCACTGCATCAGCAGTCCTAGCGGCCG < 41bp 0.752916658239678 0.474734795043906 0.7881812 0.08068365 prediction 0.505833316479356 Functional Loss - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6927545 chr17:6927547 nonsynonymous SNV 0.894 1 23 hm5C_associated_SNPs_64346 0 0 0 0 1 BCL6B chr17:6927623 5'GT 6927623 Upstream 77bp
chr11 123476185 123476185 1 + C T CESC 123476183 + 123476163 123476203 41 GGGAGCAGTGAGGCCCCCGTCTCGGTATGGGCAGTCAGCCT GGGAGCAGTGAGGCCCCCGTCTTGGTATGGGCAGTCAGCCT < 41bp 0.803053429506395 0.550140592808903 0.119102776 0.043017447 prediction 0.505825673394984 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123476183 chr11:123476185 nonsynonymous SNV 0.982 1 23 hm5C_associated_SNPs_64347 0 0 0 0 1 GRAMD1B chr11:123476186 5'GT 123476186 Upstream 2bp
chr1 155582703 155582703 1 + C T UCEC 155582701 + 155582681 155582721 41 ACACAGTCACTGTTCCTTATCGCCTGTGTTCCTCTCCAGTT ACACAGTCACTGTTCCTTATCGTCTGTGTTCCTCTCCAGTT < 41bp 0.752902708868181 0.488675353858761 0.13007432 0.2407448 prediction 0.505805417736362 Functional Loss - MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582701 chr1:155582703 synonymous SNV . 0 23 hm5C_associated_SNPs_64348 0 0 0 0 2 MSTO1 chr1:155582635 3'AG 155582635 Downstream 69bp
chr1 155582703 155582703 1 + C T UCEC 155582701 + 155582681 155582721 41 ACACAGTCACTGTTCCTTATCGCCTGTGTTCCTCTCCAGTT ACACAGTCACTGTTCCTTATCGTCTGTGTTCCTCTCCAGTT < 41bp 0.752902708868181 0.488675353858761 0.13007432 0.2407448 prediction 0.505805417736362 Functional Loss - MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582701 chr1:155582703 synonymous SNV . 0 23 hm5C_associated_SNPs_64348 0 0 0 0 2 MSTO1;MSTO2P chr1:155582766 5'GT 155582766 Upstream 64bp
chr8 121326215 121326215 1 + G T UCEC 121326213 + 121326193 121326233 41 AAATTGGTCTGCCAGGACCTCAGGGTCCACCTGGACCTCAA AAATTGGTCTGCCAGGACCTCATGGTCCACCTGGACCTCAA < 41bp 0.752889696241775 0.412995760077561 0.92833126 0.6638313 prediction 0.505779392483551 Functional Loss - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121326213 chr8:121326215 nonsynonymous SNV 0.973 5 23 hm5C_associated_SNPs_64352 0 0 0 0 2 COL14A1 chr8:121326171 3'AG 121326171 Downstream 45bp
chr8 121326215 121326215 1 + G T UCEC 121326213 + 121326193 121326233 41 AAATTGGTCTGCCAGGACCTCAGGGTCCACCTGGACCTCAA AAATTGGTCTGCCAGGACCTCATGGTCCACCTGGACCTCAA < 41bp 0.752889696241775 0.412995760077561 0.92833126 0.6638313 prediction 0.505779392483551 Functional Loss - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121326213 chr8:121326215 nonsynonymous SNV 0.973 5 23 hm5C_associated_SNPs_64352 0 0 0 0 2 COL14A1 chr8:121326266 5'GT 121326266 Upstream 52bp
chr14 102368210 102368210 1 + C T SKCM 102368208 + 102368188 102368228 41 CGGCAGTTGGCCAAATGTGTCTCCAGCCCACACTTCCAGGT CGGCAGTTGGCCAAATGTGTCTTCAGCCCACACTTCCAGGT < 41bp 0.834102237546384 0.581226164379401 0.92534524 0.10315171 prediction 0.505752146333965 Functional Loss - PPP2R5C ENSG00000078304 CDS Human protein_coding chr14:102368208 chr14:102368210 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_64356 0 0 1 0 1 PPP2R5C chr14:102368226 5'GT 102368226 Upstream 17bp
chr16 4744305 4744305 1 + G C CESC 4744304 + 4744284 4744324 41 TCTGGCCCCGTGGAAGGCACCGATGGGTAACACGTCTCCTG TCTGGCCCCGTGGAAGGCACCCATGGGTAACACGTCTCCTG < 41bp 0.752869198217308 0.447133134431915 0.53459543 0.24747354 prediction 0.505738396434615 Functional Loss - NUDT16L1 ENSG00000168101 CDS Human protein_coding chr16:4744304 chr16:4744305 synonymous SNV . 0 22 hm5C_associated_SNPs_64358 0 0 0 0 1 NUDT16L1 chr16:4744309 5'GT 4744309 Upstream 5bp
chr13 113882348 113882348 1 + T C UCEC 113882347 + 113882327 113882367 41 AACACGTGCTGGCAGGACCACTGCAGACAAATGGTAAGCTT AACACGTGCTGGCAGGACCACCGCAGACAAATGGTAAGCTT < 41bp 0.755737854886766 0.502882603156025 0.33311325 0.09790522 prediction 0.505710503461481 Functional Loss - CUL4A ENSG00000139842 CDS Human protein_coding chr13:113882347 chr13:113882348 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_64362 0 0 1 1 1 CUL4A chr13:113882359 5'GT 113882359 Upstream 12bp
chr5 178293316 178293316 1 + G C LUSC 178293312 + 178293292 178293332 41 GTGGAGAAAGCTGGCTCCTTCTCAGAGAAACTTGTACCGGG GTGGAGAAAGCTGGCTCCTTCTCACAGAAACTTGTACCGGG < 41bp 0.821731437808596 0.568877766765921 0.3475998 0.24264124 prediction 0.505707342085349 Functional Loss - ZNF354B ENSG00000178338 CDS Human protein_coding chr5:178293312 chr5:178293316 nonsynonymous SNV 0.967 3 25 hm5C_associated_SNPs_64363 0 0 0 0 2 ZNF354B chr5:178293245 3'AG 178293245 Downstream 72bp
chr5 178293316 178293316 1 + G C LUSC 178293312 + 178293292 178293332 41 GTGGAGAAAGCTGGCTCCTTCTCAGAGAAACTTGTACCGGG GTGGAGAAAGCTGGCTCCTTCTCACAGAAACTTGTACCGGG < 41bp 0.821731437808596 0.568877766765921 0.3475998 0.24264124 prediction 0.505707342085349 Functional Loss - ZNF354B ENSG00000178338 CDS Human protein_coding chr5:178293312 chr5:178293316 nonsynonymous SNV 0.967 3 25 hm5C_associated_SNPs_64363 0 0 0 0 2 ZNF354B chr5:178293371 5'GT 178293371 Upstream 56bp
chr1 166958680 166958680 1 + C T UCEC 166958678 + 166958658 166958698 41 GCGACGAGGCCTGCCTGTGGCTCGCGTTGCTGATGCCATCC GCGACGAGGCCTGCCTGTGGCTTGCGTTGCTGATGCCATCC < 41bp 0.7561062792374 0.503253159940589 0.23413867 0.13475439 prediction 0.505706238593621 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166958678 chr1:166958680 nonsynonymous SNV 0.885 4 23 hm5C_associated_SNPs_64364 0 0 0 0 2 MAEL chr1:166958638 3'AG 166958638 Downstream 43bp
chr1 166958680 166958680 1 + C T UCEC 166958678 + 166958658 166958698 41 GCGACGAGGCCTGCCTGTGGCTCGCGTTGCTGATGCCATCC GCGACGAGGCCTGCCTGTGGCTTGCGTTGCTGATGCCATCC < 41bp 0.7561062792374 0.503253159940589 0.23413867 0.13475439 prediction 0.505706238593621 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166958678 chr1:166958680 nonsynonymous SNV 0.885 4 23 hm5C_associated_SNPs_64364 0 0 0 0 2 MAEL chr1:166958721 5'GT 166958721 Upstream 42bp
chr3 37514855 37514855 1 + G T LUSC 37514853 + 37514833 37514873 41 CTCTTTCTCCAGGGAAGAATCGGGGCACGTCCTGCGGAAAG CTCTTTCTCCAGGGAAGAATCGTGGCACGTCCTGCGGAAAG < 41bp 0.886078384719628 0.633225443031192 0.96430284 0.92337036 prediction 0.505705883376872 Functional Loss - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37514853 chr3:37514855 synonymous SNV . 0 23 hm5C_associated_SNPs_64365 0 0 0 0 2 ITGA9 chr3:37514845 3'AG 37514845 Downstream 11bp
chr3 37514855 37514855 1 + G T LUSC 37514853 + 37514833 37514873 41 CTCTTTCTCCAGGGAAGAATCGGGGCACGTCCTGCGGAAAG CTCTTTCTCCAGGGAAGAATCGTGGCACGTCCTGCGGAAAG < 41bp 0.886078384719628 0.633225443031192 0.96430284 0.92337036 prediction 0.505705883376872 Functional Loss - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37514853 chr3:37514855 synonymous SNV . 0 23 hm5C_associated_SNPs_64365 0 0 0 0 2 ITGA9 chr3:37514951 5'GT 37514951 Upstream 97bp
chr2 74684548 74684548 1 + G T READ 74684546 + 74684526 74684566 41 CTGCCCACCTCCCGCCCTCACAGAGGAGATGCTGCTGAAGC CTGCCCACCTCCCGCCCTCACATAGGAGATGCTGCTGAAGC < 41bp 0.75284469627039 0.395286690201843 0.90986246 0.14526296 prediction 0.505689392540779 Functional Loss - INO80B ENSG00000115274;ENSG00000115274 exonic;splicing Human protein_coding chr2:74684546 chr2:74684548 stopgain 0.998 1 23 hm5C_associated_SNPs_64367 0 0 1 0 1 INO80B chr2:74684461 3'AG 74684461 Downstream 88bp
chr19 55106616 55106616 1 + C T rs138781448 55106614 + 55106594 55106634 41 CTACCCAGCCCTGTGGTGACCTCAGGAGGGAACGTGACCCT CTACCCAGCCCTGTGGTGACCTTAGGAGGGAACGTGACCCT < 41bp 0.786302509028391 0.533468576001008 0.5702147 0.6891695 prediction 0.505667866054766 Functional Loss - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55106614 chr19:55106616 nonsynonymous SNV 0.016 0 23 hm5C_associated_SNPs_64371 0 0 0 0 1 LILRA1 chr19:55106565 3'AG 55106565 Downstream 52bp
chr6 109627314 109627314 1 + A C rs182173935 109627310 + 109627290 109627330 41 AGCCACTGGATCCACGGAGCCTCCAGGTGTGTTTCAGATGT AGCCACTGGATCCACGGAGCCTCCCGGTGTGTTTCAGATGT < 41bp 0.752825096122894 0.354331344975697 0.9416012 0.045478106 prediction 0.505650192245787 Functional Loss - CCDC162P ENSG00000203799 ncRNA_exonic Human transcribed_unitary_pseudogene chr6:109627310 chr6:109627314 . . 0 25 hm5C_associated_SNPs_64376 0 0 1 1 1 CCDC162P chr6:109627315 5'GT 109627315 Upstream 2bp
chr9 37708409 37708409 1 + C T PAAD 37708407 + 37708387 37708427 41 GTCCAACAGGAGGCTCTGCTCACGGCAAGCTTTTCCCTGGT GTCCAACAGGAGGCTCTGCTCATGGCAAGCTTTTCCCTGGT < 41bp 0.752818378386518 0.488676875164334 0.5609944 0.55330306 prediction 0.505636756773035 Functional Loss - FRMPD1 ENSG00000070601 CDS Human protein_coding chr9:37708407 chr9:37708409 synonymous SNV . 0 23 hm5C_associated_SNPs_64379 0 0 0 0 2 FRMPD1 chr9:37708396 3'AG 37708396 Downstream 14bp
chr9 37708409 37708409 1 + C T PAAD 37708407 + 37708387 37708427 41 GTCCAACAGGAGGCTCTGCTCACGGCAAGCTTTTCCCTGGT GTCCAACAGGAGGCTCTGCTCATGGCAAGCTTTTCCCTGGT < 41bp 0.752818378386518 0.488676875164334 0.5609944 0.55330306 prediction 0.505636756773035 Functional Loss - FRMPD1 ENSG00000070601 CDS Human protein_coding chr9:37708407 chr9:37708409 synonymous SNV . 0 23 hm5C_associated_SNPs_64379 0 0 0 0 2 FRMPD1 chr9:37708498 5'GT 37708498 Upstream 90bp
chr19 50926275 50926275 1 + C T UCEC 50926273 + 50926253 50926293 41 CCTGGCCTCCCTGCATACCCCACGGAGAACTTCGCTAGCCA CCTGGCCTCCCTGCATACCCCATGGAGAACTTCGCTAGCCA < 41bp 0.774147650889536 0.521329368601742 0.8988272 0.8117623 prediction 0.505636564575589 Functional Loss - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50926273 chr19:50926275 nonsynonymous SNV 0.312 0 23 hm5C_associated_SNPs_64380 0 0 0 0 1 SPIB chr19:50926294 5'GT 50926294 Upstream 20bp
chr19 33651387 33651387 1 + G T COAD 33651385 + 33651365 33651405 41 GGGATGTAGCAGAAGGCTACCGGAAGCTCTCTTTGAAGGTA GGGATGTAGCAGAAGGCTACCGTAAGCTCTCTTTGAAGGTA < 41bp 0.752816559849721 0.414860868683129 0.9005744 0.4805332 prediction 0.505633119699441 Functional Loss - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33651385 chr19:33651387 synonymous SNV . 0 23 hm5C_associated_SNPs_64381 0 0 0 0 2 WDR88 chr19:33651320 3'AG 33651320 Downstream 68bp
chr19 33651387 33651387 1 + G T COAD 33651385 + 33651365 33651405 41 GGGATGTAGCAGAAGGCTACCGGAAGCTCTCTTTGAAGGTA GGGATGTAGCAGAAGGCTACCGTAAGCTCTCTTTGAAGGTA < 41bp 0.752816559849721 0.414860868683129 0.9005744 0.4805332 prediction 0.505633119699441 Functional Loss - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33651385 chr19:33651387 synonymous SNV . 0 23 hm5C_associated_SNPs_64381 0 0 0 0 2 WDR88 chr19:33651402 5'GT 33651402 Upstream 16bp
chr11 64034914 64034914 1 + G C rs567001401 64034910 + 64034890 64034930 41 GAGCCTGCTGGGCGAGATGCCGGAGGGGCTGGGGGACGGGC GAGCCTGCTGGGCGAGATGCCGGACGGGCTGGGGGACGGGC < 41bp 0.783783755155427 0.530972668778662 0.9186115 0.41305125 prediction 0.50562217275353 Functional Loss - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64034910 chr11:64034914 nonsynonymous SNV 0.795 0 25 hm5C_associated_SNPs_64382 0 0 1 0 1 PLCB3 chr11:64034825 3'AG 64034825 Downstream 90bp
chr19 16793307 16793307 1 + T C rs373452388 16793306 + 16793286 16793326 41 AGCCAGAGACCAACGAGATCCTGCACATGTCTTTGTGAGTA AGCCAGAGACCAACGAGATCCCGCACATGTCTTTGTGAGTA < 41bp 0.766886567809367 0.514081622536442 0.042041212 0.030073434 prediction 0.505609890545849 Functional Loss - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16793306 chr19:16793307 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_64385 0 0 0 0 2 TMEM38A chr19:16793232 3'AG 16793232 Downstream 76bp
chr19 16793307 16793307 1 + T C rs373452388 16793306 + 16793286 16793326 41 AGCCAGAGACCAACGAGATCCTGCACATGTCTTTGTGAGTA AGCCAGAGACCAACGAGATCCCGCACATGTCTTTGTGAGTA < 41bp 0.766886567809367 0.514081622536442 0.042041212 0.030073434 prediction 0.505609890545849 Functional Loss - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16793306 chr19:16793307 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_64385 0 0 0 0 2 TMEM38A chr19:16793319 5'GT 16793319 Upstream 13bp
chr1 47282729 47282729 1 + G T LUAD 47282727 + 47282707 47282747 41 GTGTTGCTGGCAGGGATGATCTGGGCAAAATGACTTATCTG GTGTTGCTGGCAGGGATGATCTTGGCAAAATGACTTATCTG < 41bp 0.88060045835287 0.627800491740462 0.82080793 0.3235867 prediction 0.505599933224815 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47282727 chr1:47282729 synonymous SNV . 0 23 hm5C_associated_SNPs_64386 0 0 0 0 1 CYP4B1 chr1:47282720 3'AG 47282720 Downstream 10bp
chr2 24239075 24239075 1 + G T LUAD 24239072 + 24239052 24239092 41 TCTGTTTGGGGGAAAAGTGTCTGGGGCGGCTGCTGACCCTG TCTGTTTGGGGGAAAAGTGTCTGTGGCGGCTGCTGACCCTG < 41bp 0.921132166275519 0.668335374305 0.81522214 0.2614243 prediction 0.505593583941036 Functional Loss - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24239072 chr2:24239075 nonsynonymous SNV 0.955 2 24 hm5C_associated_SNPs_64388 0 0 0 0 2 MFSD2B chr2:24239026 3'AG 24239026 Downstream 50bp
chr2 24239075 24239075 1 + G T LUAD 24239072 + 24239052 24239092 41 TCTGTTTGGGGGAAAAGTGTCTGGGGCGGCTGCTGACCCTG TCTGTTTGGGGGAAAAGTGTCTGTGGCGGCTGCTGACCCTG < 41bp 0.921132166275519 0.668335374305 0.81522214 0.2614243 prediction 0.505593583941036 Functional Loss - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24239072 chr2:24239075 nonsynonymous SNV 0.955 2 24 hm5C_associated_SNPs_64388 0 0 0 0 2 MFSD2B chr2:24239150 5'GT 24239150 Upstream 76bp
chr19 17893836 17893836 1 + C T SKCM 17893834 + 17893814 17893854 41 CATCCTCCCTAGCTGCCTGGCTCGAGTAACTGGGGAGCTGA CATCCTCCCTAGCTGCCTGGCTTGAGTAACTGGGGAGCTGA < 41bp 0.814563368896943 0.561770065280706 0.07228035 0.055728137 prediction 0.505586607232474 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17893834 chr19:17893836 stopgain 0.951 0 23 hm5C_associated_SNPs_64390 0 0 0 0 1 FCHO1 chr19:17893826 3'AG 17893826 Downstream 11bp
chr3 183353482 183353482 1 + G C rs553318815 183353478 + 183353458 183353498 41 GGAGAGTGCGCTGCGCCGCCCGCCGCTGAGGGACCGCGGGG GGAGAGTGCGCTGCGCCGCCCGCCCCTGAGGGACCGCGGGG < 41bp 0.794737574626774 0.541952374162842 0.20025459 0.04320991 prediction 0.505570400927864 Functional Loss - KLHL24 ENSG00000114796 UTR5 Human protein_coding chr3:183353478 chr3:183353482 . . 0 25 hm5C_associated_SNPs_64395 0 0 1 0 1 KLHL24 chr3:183353581 5'GT 183353581 Upstream 100bp
chr13 24233225 24233225 1 + C T STAD 24233223 + 24233203 24233243 41 AACCTCGTGAAGATCGCGTCCACGGCCTCCAGCCCACGGGA AACCTCGTGAAGATCGCGTCCATGGCCTCCAGCCCACGGGA < 41bp 0.752784303162263 0.479736775447879 0.17197135 0.09334397 prediction 0.505568606324525 Functional Loss - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24233223 chr13:24233225 nonsynonymous SNV 0.899 4 23 hm5C_associated_SNPs_64396 0 0 1 0 1 TNFRSF19 chr13:24233189 3'AG 24233189 Downstream 37bp
chr1 13933760 13933760 1 + G T UCEC 13933758 + 13933738 13933778 41 CGAAGATGATGTGGTGACTCCAGGAACCAGCGAAGACCGCT CGAAGATGATGTGGTGACTCCATGAACCAGCGAAGACCGCT < 41bp 0.881092805518909 0.62831104851527 0.8451743 0.17731106 prediction 0.505563514007279 Functional Loss - PDPN ENSG00000162493 CDS Human protein_coding chr1:13933758 chr1:13933760 stopgain 0.002 0 23 hm5C_associated_SNPs_64397 0 0 0 0 2 PDPN chr1:13933668 3'AG 13933668 Downstream 93bp
chr1 13933760 13933760 1 + G T UCEC 13933758 + 13933738 13933778 41 CGAAGATGATGTGGTGACTCCAGGAACCAGCGAAGACCGCT CGAAGATGATGTGGTGACTCCATGAACCAGCGAAGACCGCT < 41bp 0.881092805518909 0.62831104851527 0.8451743 0.17731106 prediction 0.505563514007279 Functional Loss - PDPN ENSG00000162493 CDS Human protein_coding chr1:13933758 chr1:13933760 stopgain 0.002 0 23 hm5C_associated_SNPs_64397 0 0 0 0 2 PDPN chr1:13933801 5'GT 13933801 Upstream 42bp
chr12 120934286 120934286 1 + C T THCA 120934284 + 120934264 120934304 41 TCGGAAGAGATGCAACAGGACTCGGTGGAGTGCGCTACTCA TCGGAAGAGATGCAACAGGACTTGGTGGAGTGCGCTACTCA < 41bp 0.810999242762798 0.558221750704166 0.29181746 0.19528344 prediction 0.505554984117265 Functional Loss - DYNLL1 ENSG00000088986 CDS Human protein_coding chr12:120934284 chr12:120934286 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_64400 0 0 1 0 3 DYNLL1 chr12:120934205 3'AG 120934205 Downstream 82bp
chr12 120934286 120934286 1 + C T THCA 120934284 + 120934264 120934304 41 TCGGAAGAGATGCAACAGGACTCGGTGGAGTGCGCTACTCA TCGGAAGAGATGCAACAGGACTTGGTGGAGTGCGCTACTCA < 41bp 0.810999242762798 0.558221750704166 0.29181746 0.19528344 prediction 0.505554984117265 Functional Loss - DYNLL1 ENSG00000088986 CDS Human protein_coding chr12:120934284 chr12:120934286 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_64400 0 0 1 0 3 DYNLL1 chr12:120934219 3'AG 120934219 Downstream 68bp
chr12 120934286 120934286 1 + C T THCA 120934284 + 120934264 120934304 41 TCGGAAGAGATGCAACAGGACTCGGTGGAGTGCGCTACTCA TCGGAAGAGATGCAACAGGACTTGGTGGAGTGCGCTACTCA < 41bp 0.810999242762798 0.558221750704166 0.29181746 0.19528344 prediction 0.505554984117265 Functional Loss - DYNLL1 ENSG00000088986 CDS Human protein_coding chr12:120934284 chr12:120934286 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_64400 0 0 1 0 3 DYNLL1 chr12:120934356 5'GT 120934356 Upstream 71bp
chrX 153608125 153608125 1 + C T SKCM 153608123 + 153608103 153608143 41 CGGCGGCTCTCGCCCCCCAGCTCGTCCGCCGCCTCCTCTTA CGGCGGCTCTCGCCCCCCAGCTTGTCCGCCGCCTCCTCTTA < 41bp 0.765157992981208 0.512380826587726 0.24295989 0.21826664 prediction 0.505554332786964 Functional Loss - EMD ENSG00000102119 CDS Human protein_coding chrX:153608123 chrX:153608125 nonsynonymous SNV 0.079 3 23 hm5C_associated_SNPs_64401 0 0 1 0 2 EMD chrX:153608050 3'AG 153608050 Downstream 76bp
chrX 153608125 153608125 1 + C T SKCM 153608123 + 153608103 153608143 41 CGGCGGCTCTCGCCCCCCAGCTCGTCCGCCGCCTCCTCTTA CGGCGGCTCTCGCCCCCCAGCTTGTCCGCCGCCTCCTCTTA < 41bp 0.765157992981208 0.512380826587726 0.24295989 0.21826664 prediction 0.505554332786964 Functional Loss - EMD ENSG00000102119 CDS Human protein_coding chrX:153608123 chrX:153608125 nonsynonymous SNV 0.079 3 23 hm5C_associated_SNPs_64401 0 0 1 0 2 EMD chrX:153608154 5'GT 153608154 Upstream 30bp
chr7 102107893 102107893 1 + G T SARC 102107890 + 102107870 102107910 41 GCTGTCAGGGATGTCCGCTACGGGCCCGAGTCCCTCAGCGA GCTGTCAGGGATGTCCGCTACGGTCCCGAGTCCCTCAGCGA < 41bp 0.752774301563372 0.351524568270988 0.8148864 0.29235315 prediction 0.505548603126744 Functional Loss - LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102107890 chr7:102107893 synonymous SNV . 0 24 hm5C_associated_SNPs_64402 0 0 1 0 1 LRWD1 chr7:102107926 5'GT 102107926 Upstream 34bp
chr3 35723339 35723339 1 + A C UCEC 35723335 + 35723315 35723355 41 AGAGAACGGCATTGTTAAATCAGAAAGTCTGGATGAAGAGG AGAGAACGGCATTGTTAAATCAGACAGTCTGGATGAAGAGG < 41bp 0.752772380793626 0.351002121147434 0.6482096 0.33514854 prediction 0.505544761587251 Functional Loss - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35723335 chr3:35723339 nonsynonymous SNV 0.932 0 25 hm5C_associated_SNPs_64403 0 0 0 0 1 ARPP21 chr3:35723372 5'GT 35723372 Upstream 34bp
chr16 15528544 15528544 1 + G T UCEC 15528541 + 15528521 15528561 41 AGCAATCTTTGTCCACCCATCTGGAAGCCGAGAAGCCTCTG AGCAATCTTTGTCCACCCATCTGTAAGCCGAGAAGCCTCTG < 41bp 0.905046934687181 0.652280531222458 0.38967013 0.23455527 prediction 0.505532806929446 Functional Loss - C16orf45 ENSG00000166780 CDS Human protein_coding chr16:15528541 chr16:15528544 stopgain 0.982 1 24 hm5C_associated_SNPs_64404 0 0 0 0 1 C16orf45 chr16:15528616 5'GT 15528616 Upstream 73bp
chr7 33944696 33944696 1 + G T rs560596245 33944693 + 33944673 33944713 41 CGGGAGGCGCCCGGTGAGCCCACGTCTGTTGCGGCGGAGCG CGGGAGGCGCCCGGTGAGCCCACTTCTGTTGCGGCGGAGCG < 41bp 0.866951226934652 0.614187541521617 0.23202595 0.18291149 prediction 0.505527370826071 Functional Loss - BMPER ENSG00000164619 UTR5 Human protein_coding chr7:33944693 chr7:33944696 . . 0 24 hm5C_associated_SNPs_64408 0 0 0 0 1 BMPER chr7:33944756 5'GT 33944756 Upstream 61bp
chr1 205038964 205038964 1 + C T LUAD 205038962 + 205038942 205038982 41 TCTTGCCCCTCAGCCCATGTCACGGGAGTACCAGAACGGAG TCTTGCCCCTCAGCCCATGTCATGGGAGTACCAGAACGGAG < 41bp 0.760889758273319 0.50813360156445 0.8450083 0.8868455 prediction 0.505512313417737 Functional Loss - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205038962 chr1:205038964 nonsynonymous SNV 0.989 4 23 hm5C_associated_SNPs_64410 0 0 0 0 1 CNTN2 chr1:205038955 3'AG 205038955 Downstream 10bp
chr3 12560653 12560653 1 + G T STAD 12560650 + 12560630 12560670 41 GCCTACCATTACTTTCGAAGCAAGGGCTGGGTGCCCAAAGT GCCTACCATTACTTTCGAAGCAATGGCTGGGTGCCCAAAGT < 41bp 0.752753031938681 0.350560247502994 0.23668867 0.04978013 prediction 0.505506063877363 Functional Loss - TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12560650 chr3:12560653 nonsynonymous SNV 0.981 4 24 hm5C_associated_SNPs_64411 0 0 1 0 2 TSEN2 chr3:12560558 3'AG 12560558 Downstream 96bp
chr3 12560653 12560653 1 + G T STAD 12560650 + 12560630 12560670 41 GCCTACCATTACTTTCGAAGCAAGGGCTGGGTGCCCAAAGT GCCTACCATTACTTTCGAAGCAATGGCTGGGTGCCCAAAGT < 41bp 0.752753031938681 0.350560247502994 0.23668867 0.04978013 prediction 0.505506063877363 Functional Loss - TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12560650 chr3:12560653 nonsynonymous SNV 0.981 4 24 hm5C_associated_SNPs_64411 0 0 1 0 2 TSEN2 chr3:12560696 5'GT 12560696 Upstream 44bp
chr20 47706244 47706244 1 + C T PRAD 47706242 + 47706222 47706262 41 TTCTTCAAGCATTCTTAGAACGCGGTTCAAACACAATAGCA TTCTTCAAGCATTCTTAGAACGTGGTTCAAACACAATAGCA < 41bp 0.752749651719846 0.483958309313539 0.3788134 0.41339433 prediction 0.505499303439692 Functional Loss - CSE1L ENSG00000124207 CDS Human protein_coding chr20:47706242 chr20:47706244 synonymous SNV . 0 23 hm5C_associated_SNPs_64412 0 0 1 0 1 CSE1L chr20:47706283 5'GT 47706283 Upstream 40bp
chr15 89172601 89172601 1 + C T SKCM 89172599 + 89172579 89172619 41 CAGCGAGCCCGGCCTCCACACCCGGGCCCGGGTCTCTCTAA CAGCGAGCCCGGCCTCCACACCTGGGCCCGGGTCTCTCTAA < 41bp 0.773069462828065 0.520332802814306 0.81122375 0.6254485 prediction 0.505473320027519 Functional Loss - AEN ENSG00000181026 CDS Human protein_coding chr15:89172599 chr15:89172601 nonsynonymous SNV 0.045 3 23 hm5C_associated_SNPs_64415 0 0 1 0 1 AEN chr15:89172657 5'GT 89172657 Upstream 57bp
chrX 134994988 134994988 1 + G C ESCA 134994987 + 134994967 134995007 41 GTTGTCTTAATTCAGCAACTCGAGAAGGCGCTTAAAGAAAT GTTGTCTTAATTCAGCAACTCCAGAAGGCGCTTAAAGAAAT < 41bp 0.752722167683962 0.494631833972338 0.32729492 0.27376938 prediction 0.505444335367924 Functional Loss - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134994987 chrX:134994988 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_64417 0 0 0 0 1 SAGE1 chrX:134994957 3'AG 134994957 Downstream 32bp
chr20 2378619 2378619 1 + A C LUAD 2378618 + 2378598 2378638 41 TCCTGGATCGAAGCCCCGGTCACCAAAACAACCCAGCCACC TCCTGGATCGAAGCCCCGGTCCCCAAAACAACCCAGCCACC < 41bp 0.752716687216578 0.490164989347448 0.04862222 0.052105814 prediction 0.505433374433155 Functional Loss - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2378618 chr20:2378619 nonsynonymous SNV 0.531 3 22 hm5C_associated_SNPs_64418 0 0 1 0 2 TGM6 chr20:2378564 3'AG 2378564 Downstream 56bp
chr20 2378619 2378619 1 + A C LUAD 2378618 + 2378598 2378638 41 TCCTGGATCGAAGCCCCGGTCACCAAAACAACCCAGCCACC TCCTGGATCGAAGCCCCGGTCCCCAAAACAACCCAGCCACC < 41bp 0.752716687216578 0.490164989347448 0.04862222 0.052105814 prediction 0.505433374433155 Functional Loss - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2378618 chr20:2378619 nonsynonymous SNV 0.531 3 22 hm5C_associated_SNPs_64418 0 0 1 0 2 TGM6 chr20:2378692 5'GT 2378692 Upstream 74bp
chr19 58904420 58904420 1 + C T UCEC 58904418 + 58904398 58904438 41 GGTATGCCGCCAAACGCTTCCGCAAAGCTCAGTGTCCCATT GGTATGCCGCCAAACGCTTCCGTAAAGCTCAGTGTCCCATT < 41bp 0.812163059091538 0.559448058407991 0.6215104 0.58673865 prediction 0.505430001367094 Functional Loss - RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904418 chr19:58904420 synonymous SNV . 0 23 hm5C_associated_SNPs_64419 0 0 1 0 1 RPS5 chr19:58904343 3'AG 58904343 Downstream 78bp
chr17 30349794 30349794 1 + C T GBM 30349792 + 30349772 30349812 41 TCAGCCCAAAGCAGAGGCTCCGCCAAGTGCCTGTGCCAGAG TCAGCCCAAAGCAGAGGCTCCGTCAAGTGCCTGTGCCAGAG < 41bp 0.752696263879682 0.483841818996219 0.48803544 0.12696585 prediction 0.505392527759364 Functional Loss - LRRC37B ENSG00000185158 CDS Human protein_coding chr17:30349792 chr17:30349794 synonymous SNV . 0 23 hm5C_associated_SNPs_64420 0 0 0 0 1 LRRC37B chr17:30349844 5'GT 30349844 Upstream 51bp
chr19 42384974 42384974 1 + C T SKCM 42384972 + 42384952 42384992 41 TGCTCCATGTATGAGGACATCTCCCGGGGCCTCCAGGGCAC TGCTCCATGTATGAGGACATCTTCCGGGGCCTCCAGGGCAC < 41bp 0.75269121737052 0.485466494565037 0.15482387 0.19261014 prediction 0.50538243474104 Functional Loss - CD79A ENSG00000105369 CDS Human protein_coding chr19:42384972 chr19:42384974 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_64421 0 0 0 0 1 CD79A chr19:42384934 3'AG 42384934 Downstream 41bp
chr4 100451101 100451101 1 + G T LUAD 100451098 + 100451078 100451118 41 CCATTTGCATACCAAACTATCTGGATCAGGAAATAAAAGTA CCATTTGCATACCAAACTATCTGTATCAGGAAATAAAAGTA < 41bp 0.752684194520593 0.389929341475374 0.20660633 0.062512845 prediction 0.505368389041186 Functional Loss - C4orf17 ENSG00000138813 CDS Human protein_coding chr4:100451098 chr4:100451101 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_64423 0 0 0 0 1 C4orf17 chr4:100451115 5'GT 100451115 Upstream 15bp
chr2 233405354 233405354 1 + G C LUAD 233405353 + 233405333 233405373 41 CGCTGGGATCCGCGAGACTACGAAGGCCTGTGGGTGCTGAG CGCTGGGATCCGCGAGACTACCAAGGCCTGTGGGTGCTGAG < 41bp 0.752681442634724 0.434022548809556 0.4442068 0.37534392 prediction 0.505362885269448 Functional Loss - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233405353 chr2:233405354 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_64424 0 0 0 0 2 CHRNG chr2:233405312 3'AG 233405312 Downstream 43bp
chr2 233405354 233405354 1 + G C LUAD 233405353 + 233405333 233405373 41 CGCTGGGATCCGCGAGACTACGAAGGCCTGTGGGTGCTGAG CGCTGGGATCCGCGAGACTACCAAGGCCTGTGGGTGCTGAG < 41bp 0.752681442634724 0.434022548809556 0.4442068 0.37534392 prediction 0.505362885269448 Functional Loss - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233405353 chr2:233405354 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_64424 0 0 0 0 2 CHRNG chr2:233405421 5'GT 233405421 Upstream 68bp
chr10 106207500 106207500 1 + C T PAAD 106207498 + 106207478 106207518 41 AACTAAAGCACGTCTTGGCCCGCCAGCCTGGACCTGAGGCT AACTAAAGCACGTCTTGGCCCGTCAGCCTGGACCTGAGGCT < 41bp 0.752676010877181 0.457383189302767 0.29710606 0.21494538 prediction 0.505352021754362 Functional Loss - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106207498 chr10:106207500 synonymous SNV . 0 23 hm5C_associated_SNPs_64425 0 0 0 0 2 CFAP58 chr10:106207456 3'AG 106207456 Downstream 45bp
chr10 106207500 106207500 1 + C T PAAD 106207498 + 106207478 106207518 41 AACTAAAGCACGTCTTGGCCCGCCAGCCTGGACCTGAGGCT AACTAAAGCACGTCTTGGCCCGTCAGCCTGGACCTGAGGCT < 41bp 0.752676010877181 0.457383189302767 0.29710606 0.21494538 prediction 0.505352021754362 Functional Loss - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106207498 chr10:106207500 synonymous SNV . 0 23 hm5C_associated_SNPs_64425 0 0 0 0 2 CFAP58 chr10:106207575 5'GT 106207575 Upstream 76bp
chr10 114053774 114053774 1 + C T HNSC 114053772 + 114053752 114053792 41 AACAGCTGTTGGGCCACCCCCTCGGCTGACTTCATGTATCC AACAGCTGTTGGGCCACCCCCTTGGCTGACTTCATGTATCC < 41bp 0.810776620321758 0.558121270822967 0.024891376 0.020109653 prediction 0.505310698997583 Functional Loss - TECTB ENSG00000119913 CDS Human protein_coding chr10:114053772 chr10:114053774 nonsynonymous SNV 0.725 4 23 hm5C_associated_SNPs_64427 0 0 0 0 2 TECTB chr10:114053736 3'AG 114053736 Downstream 39bp
chr10 114053774 114053774 1 + C T HNSC 114053772 + 114053752 114053792 41 AACAGCTGTTGGGCCACCCCCTCGGCTGACTTCATGTATCC AACAGCTGTTGGGCCACCCCCTTGGCTGACTTCATGTATCC < 41bp 0.810776620321758 0.558121270822967 0.024891376 0.020109653 prediction 0.505310698997583 Functional Loss - TECTB ENSG00000119913 CDS Human protein_coding chr10:114053772 chr10:114053774 nonsynonymous SNV 0.725 4 23 hm5C_associated_SNPs_64427 0 0 0 0 2 TECTB chr10:114053819 5'GT 114053819 Upstream 46bp
chr16 4744305 4744305 1 + G C CESC 4744301 + 4744281 4744321 41 GGCTCTGGCCCCGTGGAAGGCACCGATGGGTAACACGTCTC GGCTCTGGCCCCGTGGAAGGCACCCATGGGTAACACGTCTC < 41bp 0.810272437107502 0.557621212865247 0.4209386 0.25288612 prediction 0.505302448484511 Functional Loss - NUDT16L1 ENSG00000168101 CDS Human protein_coding chr16:4744301 chr16:4744305 synonymous SNV . 0 25 hm5C_associated_SNPs_64428 0 0 0 0 1 NUDT16L1 chr16:4744309 5'GT 4744309 Upstream 5bp
chr20 62654230 62654230 1 + C T CESC 62654228 + 62654208 62654248 41 CTTCGAGAAGAACCATGGCACTCGGTATGTGGTGGGACCCG CTTCGAGAAGAACCATGGCACTTGGTATGTGGTGGGACCCG < 41bp 0.75264662485842 0.48788087610263 0.35073644 0.20445994 prediction 0.50529324971684 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62654228 chr20:62654230 nonsynonymous SNV 0.941 4 23 hm5C_associated_SNPs_64429 0 0 0 0 1 PRPF6 chr20:62654231 5'GT 62654231 Upstream 2bp
chr19 48908563 48908563 1 + C T UCEC 48908561 + 48908541 48908581 41 GTTTCCTTCCTGAGCTCGGCCACGACTGTCGCGCCCAGAAC GTTTCCTTCCTGAGCTCGGCCATGACTGTCGCGCCCAGAAC < 41bp 0.764518547842947 0.511873070400444 0.14179325 0.10860479 prediction 0.505290954885006 Functional Loss - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48908561 chr19:48908563 synonymous SNV . 0 23 hm5C_associated_SNPs_64430 0 0 0 0 1 GRIN2D chr19:48908610 5'GT 48908610 Upstream 48bp
chr11 118851386 118851386 1 + C T STAD 118851384 + 118851364 118851404 41 GCCGCTTTGCGGAGGAGGCCCGCGCCTTGGCTTCCACTCGG GCCGCTTTGCGGAGGAGGCCCGTGCCTTGGCTTCCACTCGG < 41bp 0.768195467412203 0.515552322185804 0.8094021 0.8208877 prediction 0.505286290452798 Functional Loss - FOXR1 ENSG00000176302 CDS Human protein_coding chr11:118851384 chr11:118851386 synonymous SNV . 0 23 hm5C_associated_SNPs_64432 0 0 0 0 1 FOXR1 chr11:118851438 5'GT 118851438 Upstream 53bp
chr22 25280032 25280032 1 + G T UCEC 25280030 + 25280010 25280050 41 CCCTCAACAGGGCTGGCCTACTGCAGACACCTGTCCACCGT CCCTCAACAGGGCTGGCCTACTTCAGACACCTGTCCACCGT < 41bp 0.752635920761975 0.428215278341905 0.367965 0.2326343 prediction 0.505271841523949 Functional Loss - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25280030 chr22:25280032 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_64435 0 0 0 0 1 SGSM1 chr22:25280020 3'AG 25280020 Downstream 13bp
chr11 65304188 65304188 1 + G T UCEC 65304186 + 65304166 65304206 41 GCACCCAACCACTGCCCCAACAGAAACCAACATTCCCCAAA GCACCCAACCACTGCCCCAACATAAACCAACATTCCCCAAA < 41bp 0.752632110730025 0.405815220352139 0.13356066 0.014164358 prediction 0.50526422146005 Functional Loss - SCYL1 ENSG00000142186 CDS Human protein_coding chr11:65304186 chr11:65304188 stopgain 0.005 0 23 hm5C_associated_SNPs_64436 0 0 0 0 1 SCYL1 chr11:65304221 5'GT 65304221 Upstream 34bp
chr14 99976540 99976540 1 + G C STAD 99976539 + 99976519 99976559 41 CTTAGGTGAGGCTGAGCCGCCGGGCCCTGTGGATGCCACTG CTTAGGTGAGGCTGAGCCGCCCGGCCCTGTGGATGCCACTG < 41bp 0.849498394786243 0.596868723688546 0.85329187 0.35732168 prediction 0.505259342195393 Functional Loss - CCNK ENSG00000090061 CDS Human protein_coding chr14:99976539 chr14:99976540 synonymous SNV . 0 22 hm5C_associated_SNPs_64437 0 0 1 0 1 CCNK chr14:99976494 3'AG 99976494 Downstream 47bp
chr7 100552960 100552960 1 + C T SKCM 100552958 + 100552938 100552978 41 TTTCTGGGGACCGCTGTCAGCTCCAGACCAGATGCCAGAAT TTTCTGGGGACCGCTGTCAGCTTCAGACCAGATGCCAGAAT < 41bp 0.762268593411235 0.50964239761941 0.86933595 0.4003793 prediction 0.50525239158365 Functional Loss - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100552958 chr7:100552960 synonymous SNV . 0 23 hm5C_associated_SNPs_64439 0 0 0 0 1 MUC3A chr7:100552881 3'AG 100552881 Downstream 80bp
chr9 35660955 35660955 1 - C A rs151243859 35660957 - 35660937 35660977 41 CTCCTTTAAACAGAAGTCCTCAGGAAGAGGTCTGCTGGCCT CTCCTTTAAACAGAAGTCCTCATGAAGAGGTCTGCTGGCCT < 41bp 0.752587949006644 0.409892301345625 0.8525231 0.14726365 prediction 0.505175898013288 Functional Loss - CCDC107 ENSG00000159884 CDS Human protein_coding chr9:35660957 chr9:35660955 nonsynonymous SNV 0.386 1 23 hm5C_associated_SNPs_64445 0 0 0 0 1 CCDC107 chr9:35660964 3'AG 35660964 Downstream 10bp
chr20 45355615 45355615 1 + C T BLCA 45355613 + 45355593 45355633 41 TCTTCATCAGCCTCTCCTTCCTCGATCTCATTGGTGAGTCC TCTTCATCAGCCTCTCCTTCCTTGATCTCATTGGTGAGTCC < 41bp 0.81900945161471 0.56642866168548 0.706805 0.1157662 prediction 0.50516157985846 Functional Loss - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45355613 chr20:45355615 synonymous SNV . 0 23 hm5C_associated_SNPs_64449 0 0 1 0 1 SLC2A10 chr20:45355625 5'GT 45355625 Upstream 11bp
chr16 56792513 56792513 1 + G T UCS 56792511 + 56792491 56792531 41 TCTCCCAGCGATTGGAGAGTCTGAGTGCAGCCACCACCTTT TCTCCCAGCGATTGGAGAGTCTTAGTGCAGCCACCACCTTT < 41bp 0.752576222201158 0.420358290899494 0.13360545 0.18014795 prediction 0.505152444402316 Functional Loss - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56792511 chr16:56792513 synonymous SNV . 0 23 hm5C_associated_SNPs_64453 0 0 1 0 2 NUP93 chr16:56792450 3'AG 56792450 Downstream 64bp
chr16 56792513 56792513 1 + G T UCS 56792511 + 56792491 56792531 41 TCTCCCAGCGATTGGAGAGTCTGAGTGCAGCCACCACCTTT TCTCCCAGCGATTGGAGAGTCTTAGTGCAGCCACCACCTTT < 41bp 0.752576222201158 0.420358290899494 0.13360545 0.18014795 prediction 0.505152444402316 Functional Loss - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56792511 chr16:56792513 synonymous SNV . 0 23 hm5C_associated_SNPs_64453 0 0 1 0 2 NUP93 chr16:56792567 5'GT 56792567 Upstream 55bp
chr16 84473062 84473062 1 + A T ACC 84473058 + 84473038 84473078 41 TGCAGCGTTCTCTGTTCTGACAAGACGGGGACTCTGACTGC TGCAGCGTTCTCTGTTCTGACAAGTCGGGGACTCTGACTGC < 41bp 0.7525758701047 0.431899532432895 0.7329144 0.48528817 prediction 0.505151740209399 Functional Loss - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84473058 chr16:84473062 nonsynonymous SNV 0.846 5 25 hm5C_associated_SNPs_64454 0 0 0 0 2 ATP2C2 chr16:84473033 3'AG 84473033 Downstream 30bp
chr16 84473062 84473062 1 + A T ACC 84473058 + 84473038 84473078 41 TGCAGCGTTCTCTGTTCTGACAAGACGGGGACTCTGACTGC TGCAGCGTTCTCTGTTCTGACAAGTCGGGGACTCTGACTGC < 41bp 0.7525758701047 0.431899532432895 0.7329144 0.48528817 prediction 0.505151740209399 Functional Loss - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84473058 chr16:84473062 nonsynonymous SNV 0.846 5 25 hm5C_associated_SNPs_64454 0 0 0 0 2 ATP2C2 chr16:84473130 5'GT 84473130 Upstream 69bp
chr1 52249953 52249953 1 + G T UCEC 52249950 + 52249930 52249970 41 CCACAGGCTGTGTCTCATGTCTAGACTATGATGAACATTAC CCACAGGCTGTGTCTCATGTCTATACTATGATGAACATTAC < 41bp 0.752568173192887 0.387147960517486 0.03323978 0.04088062 prediction 0.505136346385773 Functional Loss - OSBPL9 ENSG00000117859 CDS Human protein_coding chr1:52249950 chr1:52249953 nonsynonymous SNV 0.954 4 24 hm5C_associated_SNPs_64456 0 0 1 0 1 OSBPL9 chr1:52249936 3'AG 52249936 Downstream 18bp
chr12 109945527 109945527 1 + C T UCEC 109945525 + 109945505 109945545 41 GATGCTGTTCTGTGACTGTTCGCGGCACCTCATCACGTAGG GATGCTGTTCTGTGACTGTTCGTGGCACCTCATCACGTAGG < 41bp 0.771480658511933 0.51891896447528 0.9048358 0.8583173 prediction 0.505123388073307 Functional Loss - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109945525 chr12:109945527 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_64457 0 0 0 0 1 UBE3B chr12:109945540 5'GT 109945540 Upstream 14bp
chr15 85467327 85467327 1 + T C OV 85467326 + 85467306 85467346 41 GCTGGCAGCCTGCTGGGTGCCTACATCTCCTTTGGGGTAGG GCTGGCAGCCTGCTGGGTGCCCACATCTCCTTTGGGGTAGG < 41bp 0.766771912829199 0.514214431934012 0.9368831 0.10060784 prediction 0.505114961790374 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85467326 chr15:85467327 nonsynonymous SNV 0.935 4 22 hm5C_associated_SNPs_64458 0 0 0 0 1 SLC28A1 chr15:85467341 5'GT 85467341 Upstream 15bp
chr3 183882160 183882160 1 + C T UCEC 183882158 + 183882138 183882178 41 CACGGGAGGCATCGGGGACTCCCGACCCCCATCCTTCCAGT CACGGGAGGCATCGGGGACTCCTGACCCCCATCCTTCCAGT < 41bp 0.783902517817523 0.531366480391747 0.24521911 0.15419585 prediction 0.505072074851552 Functional Loss - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183882158 chr3:183882160 stopgain 1.000 1 23 hm5C_associated_SNPs_64460 0 0 1 0 1 DVL3 chr3:183882176 5'GT 183882176 Upstream 17bp
chr17 8219165 8219165 1 + C T UCEC 8219163 + 8219143 8219183 41 GCCCACGCTGTGGGGCCTTTCTCGGTGTATGTGGATTATGT GCCCACGCTGTGGGGCCTTTCTTGGTGTATGTGGATTATGT < 41bp 0.813325114819154 0.560797266948784 0.23754418 0.070761144 prediction 0.50505569574074 Functional Loss - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8219163 chr17:8219165 nonsynonymous SNV 0.680 1 23 hm5C_associated_SNPs_64462 0 0 0 0 2 ARHGEF15 chr17:8219073 3'AG 8219073 Downstream 93bp
chr17 8219165 8219165 1 + C T UCEC 8219163 + 8219143 8219183 41 GCCCACGCTGTGGGGCCTTTCTCGGTGTATGTGGATTATGT GCCCACGCTGTGGGGCCTTTCTTGGTGTATGTGGATTATGT < 41bp 0.813325114819154 0.560797266948784 0.23754418 0.070761144 prediction 0.50505569574074 Functional Loss - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8219163 chr17:8219165 nonsynonymous SNV 0.680 1 23 hm5C_associated_SNPs_64462 0 0 0 0 2 ARHGEF15 chr17:8219225 5'GT 8219225 Upstream 61bp
chr11 123477499 123477499 1 + C T UCEC 123477497 + 123477477 123477517 41 TCAGTGACTCTTCCGACACACACGATGAAGGTGGGCATTTG TCAGTGACTCTTCCGACACACATGATGAAGGTGGGCATTTG < 41bp 0.816503782013371 0.563993254236195 0.08327171 0.121661514 prediction 0.505021055554352 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123477497 chr11:123477499 synonymous SNV . 0 23 hm5C_associated_SNPs_64464 0 0 0 0 1 GRAMD1B chr11:123477506 5'GT 123477506 Upstream 8bp
chr21 35237568 35237568 1 + G C SKCM 35237567 + 35237547 35237587 41 CCTACATCCGCTTCTGCAGCCGCCAGCTCAACGGGGCTGCC CCTACATCCGCTTCTGCAGCCCCCAGCTCAACGGGGCTGCC < 41bp 0.775089590064259 0.522590077334182 0.5246684 0.16679993 prediction 0.504999025460152 Functional Loss - ITSN1 ENSG00000205726 CDS Human protein_coding chr21:35237567 chr21:35237568 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_64468 0 0 0 0 1 ITSN1 chr21:35237638 5'GT 35237638 Upstream 71bp
chr11 9499962 9499962 1 + G T SARC 9499960 + 9499940 9499980 41 GTTATGACCAGAGTGCATTACAGGCGGTTCAGCTGGAAGAT GTTATGACCAGAGTGCATTACATGCGGTTCAGCTGGAAGAT < 41bp 0.75248937288371 0.404449811683617 0.84447205 0.39516112 prediction 0.504978745767421 Functional Loss - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9499960 chr11:9499962 nonsynonymous SNV 0.992 2 23 hm5C_associated_SNPs_64470 0 0 1 0 1 ZNF143 chr11:9499937 3'AG 9499937 Downstream 26bp
chr10 28970473 28970473 1 + A C rs61729233 28970472 + 28970452 28970492 41 TCCTCCCAGGGGTGAGGCCTCAGGTAGGTGGAAGCCGTTTC TCCTCCCAGGGGTGAGGCCTCCGGTAGGTGGAAGCCGTTTC < 41bp 0.789786505820613 0.537310509934412 0.7849624 0.7770099 prediction 0.504951991772403 Functional Loss - BAMBI ENSG00000095739 CDS Human protein_coding chr10:28970472 chr10:28970473 synonymous SNV . 0 22 hm5C_associated_SNPs_64474 0 0 0 0 1 BAMBI chr10:28970474 5'GT 28970474 Upstream 2bp
chr17 74381722 74381722 1 + G T UCEC 74381719 + 74381699 74381739 41 TGGCAGCGGGAGCCGCGGGTCGAGGTTATGGATCCAGGTTT TGGCAGCGGGAGCCGCGGGTCGATGTTATGGATCCAGGTTT < 41bp 0.882014025521192 0.629540066174426 0.90675354 0.37507343 prediction 0.504947918693531 Functional Loss - SPHK1 ENSG00000176170 CDS Human protein_coding chr17:74381719 chr17:74381722 nonsynonymous SNV 0.419 0 24 hm5C_associated_SNPs_64475 0 0 1 0 1 SPHK1 chr17:74381735 5'GT 74381735 Upstream 14bp
chr16 67654694 67654694 1 + T C STAD 67654693 + 67654673 67654713 41 CCAGCAGGGACACATACAAGCTGAAAAGGCACATGAGAACC CCAGCAGGGACACATACAAGCCGAAAAGGCACATGAGAACC < 41bp 0.753987670506244 0.501522288903967 0.36112672 0.15444687 prediction 0.504930763204553 Functional Loss - CTCF ENSG00000102974 CDS Human protein_coding chr16:67654693 chr16:67654694 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_64476 0 0 1 0 2 CTCF chr16:67654600 3'AG 67654600 Downstream 95bp
chr16 67654694 67654694 1 + T C STAD 67654693 + 67654673 67654713 41 CCAGCAGGGACACATACAAGCTGAAAAGGCACATGAGAACC CCAGCAGGGACACATACAAGCCGAAAAGGCACATGAGAACC < 41bp 0.753987670506244 0.501522288903967 0.36112672 0.15444687 prediction 0.504930763204553 Functional Loss - CTCF ENSG00000102974 CDS Human protein_coding chr16:67654693 chr16:67654694 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_64476 0 0 1 0 2 CTCF chr16:67654720 5'GT 67654720 Upstream 27bp
chr4 120188591 120188591 1 + G T LUAD 120188588 + 120188568 120188608 41 GTTTCTACTGAGGATGCACTCAGGCAGGTCATCAGCTGGTC GTTTCTACTGAGGATGCACTCAGTCAGGTCATCAGCTGGTC < 41bp 0.752464931969438 0.369417984112917 0.8487244 0.11068961 prediction 0.504929863938876 Functional Loss - USP53 ENSG00000145390;ENSG00000145390 exonic;splicing Human protein_coding chr4:120188588 chr4:120188591 nonsynonymous SNV 0.980 1 24 hm5C_associated_SNPs_64477 0 0 1 0 1 USP53 chr4:120188637 5'GT 120188637 Upstream 47bp
chr1 158908926 158908926 1 + A T LUSC 158908922 + 158908902 158908942 41 AACCAAAAGGAGTAAGATGTCCAAAGAGCAGACTCGGCCTT AACCAAAAGGAGTAAGATGTCCAATGAGCAGACTCGGCCTT < 41bp 0.752454224479819 0.455272319953717 0.08643752 0.025433213 prediction 0.504908448959639 Functional Loss - PYHIN1 ENSG00000163564 CDS Human protein_coding chr1:158908922 chr1:158908926 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_64478 0 0 0 0 1 PYHIN1 chr1:158908870 3'AG 158908870 Downstream 57bp
chr4 187175753 187175753 1 + A C rs4253316 187175752 + 187175732 187175772 41 TCTCTCCTAGGCTTCCCCTGCAGGATGTTTGGCGCATCTAT TCTCTCCTAGGCTTCCCCTGCCGGATGTTTGGCGCATCTAT < 41bp 0.75245313069931 0.498831615509654 0.92229676 0.90632606 prediction 0.50490626139862 Functional Loss - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187175752 chr4:187175753 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_64479 0 0 0 0 1 KLKB1 chr4:187175742 3'AG 187175742 Downstream 12bp
chrX 130217917 130217917 1 + C T COAD 130217915 + 130217895 130217935 41 GCGGAATGAGCCCACCTTGCCCCGGGAGTTCACTCGCCGTG GCGGAATGAGCCCACCTTGCCCTGGGAGTTCACTCGCCGTG < 41bp 0.762758389529179 0.510316067737845 0.16246232 0.11114851 prediction 0.504884643582669 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130217915 chrX:130217917 nonsynonymous SNV 0.590 2 23 hm5C_associated_SNPs_64482 0 0 0 0 1 ARHGAP36 chrX:130217943 5'GT 130217943 Upstream 27bp
chr16 28838216 28838216 1 + C T COAD 28838214 + 28838194 28838234 41 GATTCAGCCATTGCCATGAACTCGAAAGTGAATGGGGAACA GATTCAGCCATTGCCATGAACTTGAAAGTGAATGGGGAACA < 41bp 0.819369595706326 0.566927330989842 0.31950665 0.08085838 prediction 0.504884529432968 Functional Loss - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28838214 chr16:28838216 nonsynonymous SNV 0.927 3 23 hm5C_associated_SNPs_64483 0 0 1 0 3 ATXN2L chr16:28838183 3'AG 28838183 Downstream 34bp
chr16 28838216 28838216 1 + C T COAD 28838214 + 28838194 28838234 41 GATTCAGCCATTGCCATGAACTCGAAAGTGAATGGGGAACA GATTCAGCCATTGCCATGAACTTGAAAGTGAATGGGGAACA < 41bp 0.819369595706326 0.566927330989842 0.31950665 0.08085838 prediction 0.504884529432968 Functional Loss - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28838214 chr16:28838216 nonsynonymous SNV 0.927 3 23 hm5C_associated_SNPs_64483 0 0 1 0 3 ATXN2L chr16:28838244 5'GT 28838244 Upstream 29bp
chr16 28838216 28838216 1 + C T COAD 28838214 + 28838194 28838234 41 GATTCAGCCATTGCCATGAACTCGAAAGTGAATGGGGAACA GATTCAGCCATTGCCATGAACTTGAAAGTGAATGGGGAACA < 41bp 0.819369595706326 0.566927330989842 0.31950665 0.08085838 prediction 0.504884529432968 Functional Loss - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28838214 chr16:28838216 nonsynonymous SNV 0.927 3 23 hm5C_associated_SNPs_64483 0 0 1 0 3 ATXN2L chr16:28838307 5'GT 28838307 Upstream 92bp
chr19 11657703 11657703 1 + C T COAD 11657701 + 11657681 11657721 41 CCAAGTATGGGGTGAAGCCCCACGACATTTTTGAGGCCAAC CCAAGTATGGGGTGAAGCCCCATGACATTTTTGAGGCCAAC < 41bp 0.798159478045574 0.545729090360115 0.26059133 0.5186697 prediction 0.504860775370917 Functional Loss - CNN1 ENSG00000130176 CDS Human protein_coding chr19:11657701 chr19:11657703 synonymous SNV . 0 23 hm5C_associated_SNPs_64484 0 0 0 0 2 CNN1 chr19:11657647 3'AG 11657647 Downstream 57bp
chr19 11657703 11657703 1 + C T COAD 11657701 + 11657681 11657721 41 CCAAGTATGGGGTGAAGCCCCACGACATTTTTGAGGCCAAC CCAAGTATGGGGTGAAGCCCCATGACATTTTTGAGGCCAAC < 41bp 0.798159478045574 0.545729090360115 0.26059133 0.5186697 prediction 0.504860775370917 Functional Loss - CNN1 ENSG00000130176 CDS Human protein_coding chr19:11657701 chr19:11657703 synonymous SNV . 0 23 hm5C_associated_SNPs_64484 0 0 0 0 2 CNN1 chr19:11657784 5'GT 11657784 Upstream 82bp
chrX 114871204 114871204 1 + C T SKCM 114871202 + 114871182 114871222 41 GGAGGAACTTATGAAATTGTCTCCAGAAGAGCTTCTGCTTA GGAGGAACTTATGAAATTGTCTTCAGAAGAGCTTCTGCTTA < 41bp 0.825192862298743 0.572770697632859 0.9513129 0.79990995 prediction 0.504844329331767 Functional Loss - PLS3 ENSG00000102024 CDS Human protein_coding chrX:114871202 chrX:114871204 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_64487 0 0 1 0 2 PLS3 chrX:114871148 3'AG 114871148 Downstream 57bp
chrX 114871204 114871204 1 + C T SKCM 114871202 + 114871182 114871222 41 GGAGGAACTTATGAAATTGTCTCCAGAAGAGCTTCTGCTTA GGAGGAACTTATGAAATTGTCTTCAGAAGAGCTTCTGCTTA < 41bp 0.825192862298743 0.572770697632859 0.9513129 0.79990995 prediction 0.504844329331767 Functional Loss - PLS3 ENSG00000102024 CDS Human protein_coding chrX:114871202 chrX:114871204 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_64487 0 0 1 0 2 PLS3 chrX:114871290 5'GT 114871290 Upstream 87bp
chr10 43604497 43604497 1 + A T GBM 43604493 + 43604473 43604513 41 CTGCAGGGCTGGTTCTCAACCGGAACCTCTCCATCTCGGAG CTGCAGGGCTGGTTCTCAACCGGATCCTCTCCATCTCGGAG < 41bp 0.752414720465568 0.430309465221263 0.10162982 0.05274403 prediction 0.504829440931135 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43604493 chr10:43604497 nonsynonymous SNV 0.257 2 25 hm5C_associated_SNPs_64488 0 0 1 0 1 RET chr10:43604479 3'AG 43604479 Downstream 19bp
chr15 45437157 45437157 1 + A T BRCA 45437153 + 45437133 45437173 41 TGGAAAATCTCCGGGGAGCTCTGAAGGAGAGCGGGTTGAGC TGGAAAATCTCCGGGGAGCTCTGATGGAGAGCGGGTTGAGC < 41bp 0.752407484469839 0.41958733792407 0.5908122 0.5136358 prediction 0.504814968939678 Functional Loss - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45437153 chr15:45437157 nonsynonymous SNV 0.985 1 25 hm5C_associated_SNPs_64489 0 0 0 0 1 DUOX1 chr15:45437093 3'AG 45437093 Downstream 65bp
chr16 1823777 1823777 1 + G C CESC 1823776 + 1823756 1823796 41 CTGGGCTGCGAGTGCCGCATCGAGCCCCAGCGCCCGGCCCG CTGGGCTGCGAGTGCCGCATCCAGCCCCAGCGCCCGGCCCG < 41bp 0.752404771201286 0.446618980666803 0.72799885 0.4088913 prediction 0.504809542402572 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1823776 chr16:1823777 nonsynonymous SNV 0.299 3 22 hm5C_associated_SNPs_64491 0 0 1 0 1 EME2 chr16:1823706 3'AG 1823706 Downstream 72bp
chr6 28264665 28264665 1 + C T rs139942981 28264663 + 28264643 28264683 41 GTGGTCACATCTGAGTCTGACTCGGAGGAACCTCTGTGGGA GTGGTCACATCTGAGTCTGACTTGGAGGAACCTCTGTGGGA < 41bp 0.787918891250775 0.535524407744687 0.17169964 0.24400273 prediction 0.504788967012176 Functional Loss - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28264663 chr6:28264665 nonsynonymous SNV 0.131 1 23 hm5C_associated_SNPs_64494 0 0 1 0 2 PGBD1 chr6:28264593 3'AG 28264593 Downstream 73bp
chr6 28264665 28264665 1 + C T rs139942981 28264663 + 28264643 28264683 41 GTGGTCACATCTGAGTCTGACTCGGAGGAACCTCTGTGGGA GTGGTCACATCTGAGTCTGACTTGGAGGAACCTCTGTGGGA < 41bp 0.787918891250775 0.535524407744687 0.17169964 0.24400273 prediction 0.504788967012176 Functional Loss - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28264663 chr6:28264665 nonsynonymous SNV 0.131 1 23 hm5C_associated_SNPs_64494 0 0 1 0 2 PGBD1 chr6:28264722 5'GT 28264722 Upstream 58bp
chr1 22915685 22915685 1 + C T LIHC 22915683 + 22915663 22915703 41 CGGGCCGCTGTGGTCAACATCACCACGAACCAGGCAGGTAG CGGGCCGCTGTGGTCAACATCATCACGAACCAGGCAGGTAG < 41bp 0.790437092971678 0.53804852040346 0.28776175 0.1556915 prediction 0.504777145136436 Functional Loss - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22915683 chr1:22915685 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_64495 0 0 0 0 1 EPHA8 chr1:22915699 5'GT 22915699 Upstream 15bp
chr8 38095662 38095662 1 + C T rs2306899 38095660 + 38095640 38095680 41 GATGATTGGGGTTCAACACCCACGGAGCAGGGTCGACCAAG GATGATTGGGGTTCAACACCCATGGAGCAGGGTCGACCAAG < 41bp 0.783845800452806 0.531459306350593 0.45886272 0.25622174 prediction 0.504772988204426 Functional Loss - DDHD2 ENSG00000085788 CDS Human protein_coding chr8:38095660 chr8:38095662 nonsynonymous SNV 0.287 0 23 hm5C_associated_SNPs_64496 1 0 1 0 2 DDHD2 chr8:38095607 3'AG 38095607 Downstream 56bp
chr8 38095662 38095662 1 + C T rs2306899 38095660 + 38095640 38095680 41 GATGATTGGGGTTCAACACCCACGGAGCAGGGTCGACCAAG GATGATTGGGGTTCAACACCCATGGAGCAGGGTCGACCAAG < 41bp 0.783845800452806 0.531459306350593 0.45886272 0.25622174 prediction 0.504772988204426 Functional Loss - DDHD2 ENSG00000085788 CDS Human protein_coding chr8:38095660 chr8:38095662 nonsynonymous SNV 0.287 0 23 hm5C_associated_SNPs_64496 1 0 1 0 2 DDHD2 chr8:38095727 5'GT 38095727 Upstream 66bp
chr9 96398721 96398721 1 + C T rs142682904 96398719 + 96398699 96398739 41 AGAAGCGGACCTGGCACAAACACGGCCCGGGGCAAGCGCCT AGAAGCGGACCTGGCACAAACATGGCCCGGGGCAAGCGCCT < 41bp 0.783439962315861 0.531059054948619 0.17555293 0.27000427 prediction 0.504761814734485 Functional Loss - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96398719 chr9:96398721 synonymous SNV . 0 23 hm5C_associated_SNPs_64497 0 0 0 0 2 PHF2 chr9:96398693 3'AG 96398693 Downstream 29bp
chr9 96398721 96398721 1 + C T rs142682904 96398719 + 96398699 96398739 41 AGAAGCGGACCTGGCACAAACACGGCCCGGGGCAAGCGCCT AGAAGCGGACCTGGCACAAACATGGCCCGGGGCAAGCGCCT < 41bp 0.783439962315861 0.531059054948619 0.17555293 0.27000427 prediction 0.504761814734485 Functional Loss - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96398719 chr9:96398721 synonymous SNV . 0 23 hm5C_associated_SNPs_64497 0 0 0 0 2 PHF2 chr9:96398807 5'GT 96398807 Upstream 87bp
chrX 7243484 7243484 1 + A T LUAD 7243480 + 7243460 7243500 41 AAGATTGATGAGCCCACTAGCAACATGGACATATTTCCTAC AAGATTGATGAGCCCACTAGCAACTTGGACATATTTCCTAC < 41bp 0.752364712790259 0.418813979392667 0.4807754 0.23458499 prediction 0.504729425580518 Functional Loss - STS ENSG00000101846 CDS Human protein_coding chrX:7243480 chrX:7243484 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_64501 0 0 0 0 1 STS chrX:7243539 5'GT 7243539 Upstream 56bp
chr1 52881036 52881036 1 + A T KIRC 52881032 + 52881012 52881052 41 CATCACCGTAGTCACAGACACAGGAGCCACTCAAAGTCTCC CATCACCGTAGTCACAGACACAGGTGCCACTCAAAGTCTCC < 41bp 0.752355934363145 0.435385795548379 0.8148658 0.4895522 prediction 0.50471186872629 Functional Loss - PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52881032 chr1:52881036 nonsynonymous SNV 0.974 3 25 hm5C_associated_SNPs_64503 0 0 1 0 2 PRPF38A chr1:52881010 3'AG 52881010 Downstream 27bp
chr1 52881036 52881036 1 + A T KIRC 52881032 + 52881012 52881052 41 CATCACCGTAGTCACAGACACAGGAGCCACTCAAAGTCTCC CATCACCGTAGTCACAGACACAGGTGCCACTCAAAGTCTCC < 41bp 0.752355934363145 0.435385795548379 0.8148658 0.4895522 prediction 0.50471186872629 Functional Loss - PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52881032 chr1:52881036 nonsynonymous SNV 0.974 3 25 hm5C_associated_SNPs_64503 0 0 1 0 2 PRPF38A chr1:52881058 5'GT 52881058 Upstream 23bp
chr3 133525492 133525492 1 + G C BLCA 133525488 + 133525468 133525508 41 TCCGGAGCAGAAGGAGCAGTCAGAGAGCTGTTCTTCTTGTT TCCGGAGCAGAAGGAGCAGTCAGACAGCTGTTCTTCTTGTT < 41bp 0.752350779697047 0.459325064146197 0.89229816 0.7262788 prediction 0.504701559394095 Functional Loss - SRPRB ENSG00000144867 CDS Human protein_coding chr3:133525488 chr3:133525492 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_64504 0 0 1 0 1 SRPRB chr3:133525453 3'AG 133525453 Downstream 40bp
chr1 186901983 186901983 1 + G T LUAD 186901980 + 186901960 186902000 41 GATGAAGGCATTATACGAATCAGGAATTCTGGATTGTGCTA GATGAAGGCATTATACGAATCAGTAATTCTGGATTGTGCTA < 41bp 0.903998681023382 0.651649007812638 0.884315 0.35242504 prediction 0.504699346421489 Functional Loss - PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186901980 chr1:186901983 nonsynonymous SNV 0.985 4 24 hm5C_associated_SNPs_64505 0 0 0 0 2 PLA2G4A chr1:186901895 3'AG 186901895 Downstream 89bp
chr1 186901983 186901983 1 + G T LUAD 186901980 + 186901960 186902000 41 GATGAAGGCATTATACGAATCAGGAATTCTGGATTGTGCTA GATGAAGGCATTATACGAATCAGTAATTCTGGATTGTGCTA < 41bp 0.903998681023382 0.651649007812638 0.884315 0.35242504 prediction 0.504699346421489 Functional Loss - PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186901980 chr1:186901983 nonsynonymous SNV 0.985 4 24 hm5C_associated_SNPs_64505 0 0 0 0 2 PLA2G4A chr1:186902031 5'GT 186902031 Upstream 49bp
chrX 149764986 149764986 1 + G T UCS 149764983 + 149764963 149765003 41 CGTCTCGAGATGGAGTCAATCGAGATCTCACTGAGGCTGTT CGTCTCGAGATGGAGTCAATCGATATCTCACTGAGGCTGTT < 41bp 0.909426483601574 0.657084024118877 0.9002285 0.20497385 prediction 0.504684918965394 Functional Loss - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149764983 chrX:149764986 nonsynonymous SNV 0.287 2 24 hm5C_associated_SNPs_64508 0 0 1 0 2 MTM1 chrX:149764962 3'AG 149764962 Downstream 25bp
chrX 149764986 149764986 1 + G T UCS 149764983 + 149764963 149765003 41 CGTCTCGAGATGGAGTCAATCGAGATCTCACTGAGGCTGTT CGTCTCGAGATGGAGTCAATCGATATCTCACTGAGGCTGTT < 41bp 0.909426483601574 0.657084024118877 0.9002285 0.20497385 prediction 0.504684918965394 Functional Loss - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149764983 chrX:149764986 nonsynonymous SNV 0.287 2 24 hm5C_associated_SNPs_64508 0 0 1 0 2 MTM1 chrX:149765034 5'GT 149765034 Upstream 49bp
chr4 178897011 178897011 1 + G T LUSC 178897009 + 178896989 178897029 41 GGATTGTCATCACTGGGGCACGGGAAAGGGGTTGAGCAAGT GGATTGTCATCACTGGGGCACGTGAAAGGGGTTGAGCAAGT < 41bp 0.752341371676999 0.4272830319211 0.47232908 0.24698102 prediction 0.504682743353997 Functional Loss - LINC01098 ENSG00000231171 CDS Human lincRNA chr4:178897009 chr4:178897011 stopgain . 0 23 hm5C_associated_SNPs_64509 0 0 0 0 2 LINC01098 chr4:178896958 3'AG 178896958 Downstream 54bp
chr4 178897011 178897011 1 + G T LUSC 178897009 + 178896989 178897029 41 GGATTGTCATCACTGGGGCACGGGAAAGGGGTTGAGCAAGT GGATTGTCATCACTGGGGCACGTGAAAGGGGTTGAGCAAGT < 41bp 0.752341371676999 0.4272830319211 0.47232908 0.24698102 prediction 0.504682743353997 Functional Loss - LINC01098 ENSG00000231171 CDS Human lincRNA chr4:178897009 chr4:178897011 stopgain . 0 23 hm5C_associated_SNPs_64509 0 0 0 0 2 LINC01098 chr4:178897097 5'GT 178897097 Upstream 87bp
chr6 24134674 24134674 1 + C T SKCM 24134672 + 24134652 24134692 41 TTTTATGAGGACTGTACAGCCTCAATTTGGGAGTATGAGGA TTTTATGAGGACTGTACAGCCTTAATTTGGGAGTATGAGGA < 41bp 0.8347622421143 0.582421962010212 0.48930964 0.34346402 prediction 0.504680560208175 Functional Loss - NRSN1 ENSG00000152954 CDS Human protein_coding chr6:24134672 chr6:24134674 nonsynonymous SNV 0.728 4 23 hm5C_associated_SNPs_64512 0 0 0 0 1 NRSN1 chr6:24134744 5'GT 24134744 Upstream 71bp
chr6 161160172 161160172 1 + G T UCEC 161160170 + 161160150 161160190 41 TGAATCTCGAACCGCATGTTCAGGAAATAGAAGTGTCTAGG TGAATCTCGAACCGCATGTTCATGAAATAGAAGTGTCTAGG < 41bp 0.752338381166886 0.405466014886408 0.8927328 0.43194816 prediction 0.504676762333772 Functional Loss - PLG ENSG00000122194 CDS Human protein_coding chr6:161160170 chr6:161160172 nonsynonymous SNV 0.040 4 23 hm5C_associated_SNPs_64513 0 0 0 0 2 PLG chr6:161160100 3'AG 161160100 Downstream 73bp
chr6 161160172 161160172 1 + G T UCEC 161160170 + 161160150 161160190 41 TGAATCTCGAACCGCATGTTCAGGAAATAGAAGTGTCTAGG TGAATCTCGAACCGCATGTTCATGAAATAGAAGTGTCTAGG < 41bp 0.752338381166886 0.405466014886408 0.8927328 0.43194816 prediction 0.504676762333772 Functional Loss - PLG ENSG00000122194 CDS Human protein_coding chr6:161160170 chr6:161160172 nonsynonymous SNV 0.040 4 23 hm5C_associated_SNPs_64513 0 0 0 0 2 PLG chr6:161160240 5'GT 161160240 Upstream 69bp
chr10 95552960 95552960 1 + G T UCEC 95552957 + 95552937 95552977 41 TTGCAGAATTTGCAAAGTCTCAAGACCTGCCTTATCAATCA TTGCAGAATTTGCAAAGTCTCAATACCTGCCTTATCAATCA < 41bp 0.752333042279569 0.385958652632274 0.3594675 0.06355688 prediction 0.504666084559137 Functional Loss - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95552957 chr10:95552960 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_64514 0 0 0 3 1 LGI1 chr10:95552943 3'AG 95552943 Downstream 18bp
chr22 38212289 38212289 1 + C T rs35749384 38212287 + 38212267 38212307 41 CCCTGTGATGCTGGGTGATGCCCGGCTGGCCTCTCGCATGG CCCTGTGATGCTGGGTGATGCCTGGCTGGCCTCTCGCATGG < 41bp 0.771987633353735 0.519655373870666 0.07468942 0.041813552 prediction 0.504664518966139 Functional Loss - GCAT ENSG00000100116 CDS Human protein_coding chr22:38212287 chr22:38212289 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_64515 0 0 0 0 2 GCAT chr22:38212207 3'AG 38212207 Downstream 83bp
chr22 38212289 38212289 1 + C T rs35749384 38212287 + 38212267 38212307 41 CCCTGTGATGCTGGGTGATGCCCGGCTGGCCTCTCGCATGG CCCTGTGATGCTGGGTGATGCCTGGCTGGCCTCTCGCATGG < 41bp 0.771987633353735 0.519655373870666 0.07468942 0.041813552 prediction 0.504664518966139 Functional Loss - GCAT ENSG00000100116 CDS Human protein_coding chr22:38212287 chr22:38212289 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_64515 0 0 0 0 2 GCAT chr22:38212328 5'GT 38212328 Upstream 40bp
chr7 89909173 89909173 1 + A T STAD 89909169 + 89909149 89909189 41 CATGTCATGCCAGGGAAATGCTCGAGTCCTTGCATTTCTAG CATGTCATGCCAGGGAAATGCTCGTGTCCTTGCATTTCTAG < 41bp 0.871338768385764 0.619006624407227 0.80879277 0.31839716 prediction 0.504664287957075 Functional Loss - CFAP69 ENSG00000105792 CDS Human protein_coding chr7:89909169 chr7:89909173 synonymous SNV . 0 25 hm5C_associated_SNPs_64516 0 0 1 0 1 CFAP69 chr7:89909207 5'GT 89909207 Upstream 35bp
chr3 129251103 129251103 1 + C T rs189018030 129251101 + 129251081 129251121 41 TGCCTGTCCTCAGGTACATCCCCGAGGGCCTGCAGTGCTCG TGCCTGTCCTCAGGTACATCCCTGAGGGCCTGCAGTGCTCG < 41bp 0.772995200572704 0.520668363516611 0.6652857 0.14271432 prediction 0.504653674112185 Functional Loss - RHO ENSG00000163914 CDS Human protein_coding chr3:129251101 chr3:129251103 synonymous SNV . 0 23 hm5C_associated_SNPs_64518 0 0 0 0 1 RHO chr3:129251094 3'AG 129251094 Downstream 10bp
chr1 38022605 38022605 1 + C T rs576586816 38022603 + 38022583 38022623 41 TCTCGCCTCCGCCATGATTCCGCCCGCAGACTCTTTGCTCA TCTCGCCTCCGCCATGATTCCGTCCGCAGACTCTTTGCTCA < 41bp 0.763336513073991 0.511011442096398 0.13148281 0.11722708 prediction 0.504650141955186 Functional Loss - DNALI1 ENSG00000163879 CDS Human protein_coding chr1:38022603 chr1:38022605 nonsynonymous SNV 0.620 1 23 hm5C_associated_SNPs_64519 0 0 0 0 1 DNALI1 chr1:38022676 5'GT 38022676 Upstream 72bp
chr10 7844286 7844286 1 + G T UCEC 7844283 + 7844263 7844303 41 CTGACGTGCTGCAAAATTACCAAGAATACAATCTGGCCAAC CTGACGTGCTGCAAAATTACCAATAATACAATCTGGCCAAC < 41bp 0.905153436299334 0.652828556291587 0.3221265 0.117453754 prediction 0.504649760015495 Functional Loss - ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7844283 chr10:7844286 stopgain 0.994 1 24 hm5C_associated_SNPs_64520 0 0 1 0 1 ATP5C1 chr10:7844233 3'AG 7844233 Downstream 54bp
chr9 916890 916890 1 + C T LUSC 916888 + 916868 916908 41 TTTGAGGATGCTCCCTCTTACCCGGAAGCCAGGGCGAGCGG TTTGAGGATGCTCCCTCTTACCTGGAAGCCAGGGCGAGCGG < 41bp 0.765691461107689 0.513367269526946 0.14640376 0.1057255 prediction 0.504648383161487 Functional Loss - DMRT1 ENSG00000137090 CDS Human protein_coding chr9:916888 chr9:916890 nonsynonymous SNV 0.017 1 23 hm5C_associated_SNPs_64521 0 0 0 0 1 DMRT1 chr9:916907 5'GT 916907 Upstream 18bp
chr21 45220445 45220445 1 + C T LUAD 45220443 + 45220423 45220463 41 GACTGTTTGAAATGGCCAGCCGCCAGAGCACCCCTTCTCAG GACTGTTTGAAATGGCCAGCCGTCAGAGCACCCCTTCTCAG < 41bp 0.817142584424279 0.564819592971729 0.19423077 0.059130162 prediction 0.5046459829051 Functional Loss - RRP1 ENSG00000160214 CDS Human protein_coding chr21:45220443 chr21:45220445 synonymous SNV . 0 23 hm5C_associated_SNPs_64522 0 0 1 0 2 RRP1 chr21:45220398 3'AG 45220398 Downstream 48bp
chr21 45220445 45220445 1 + C T LUAD 45220443 + 45220423 45220463 41 GACTGTTTGAAATGGCCAGCCGCCAGAGCACCCCTTCTCAG GACTGTTTGAAATGGCCAGCCGTCAGAGCACCCCTTCTCAG < 41bp 0.817142584424279 0.564819592971729 0.19423077 0.059130162 prediction 0.5046459829051 Functional Loss - RRP1 ENSG00000160214 CDS Human protein_coding chr21:45220443 chr21:45220445 synonymous SNV . 0 23 hm5C_associated_SNPs_64522 0 0 1 0 2 RRP1 chr21:45220495 5'GT 45220495 Upstream 51bp
chrX 153001631 153001631 1 + G T UCEC 153001629 + 153001609 153001649 41 GGAGCTGGTGAGCGAGCGCACAGAAGCCTTCACTATTGCCC GGAGCTGGTGAGCGAGCGCACATAAGCCTTCACTATTGCCC < 41bp 0.752319287745012 0.393208236776495 0.30023825 0.12536466 prediction 0.504638575490024 Functional Loss - ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153001629 chrX:153001631 stopgain 0.974 1 23 hm5C_associated_SNPs_64523 0 0 0 0 2 ABCD1 chrX:153001566 3'AG 153001566 Downstream 66bp
chrX 153001631 153001631 1 + G T UCEC 153001629 + 153001609 153001649 41 GGAGCTGGTGAGCGAGCGCACAGAAGCCTTCACTATTGCCC GGAGCTGGTGAGCGAGCGCACATAAGCCTTCACTATTGCCC < 41bp 0.752319287745012 0.393208236776495 0.30023825 0.12536466 prediction 0.504638575490024 Functional Loss - ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153001629 chrX:153001631 stopgain 0.974 1 23 hm5C_associated_SNPs_64523 0 0 0 0 2 ABCD1 chrX:153001708 5'GT 153001708 Upstream 78bp
chr22 46719109 46719109 1 + A C OV 46719105 + 46719085 46719125 41 AGGTGACTCCCCGGACAGCTCAACACCAAAGCTTTCGCGGG AGGTGACTCCCCGGACAGCTCAACCCCAAAGCTTTCGCGGG < 41bp 0.752313841038803 0.331337287119289 0.19427425 0.11869997 prediction 0.504627682077606 Functional Loss - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46719105 chr22:46719109 synonymous SNV . 0 25 hm5C_associated_SNPs_64524 0 0 1 0 2 GTSE1 chr22:46719087 3'AG 46719087 Downstream 23bp
chr22 46719109 46719109 1 + A C OV 46719105 + 46719085 46719125 41 AGGTGACTCCCCGGACAGCTCAACACCAAAGCTTTCGCGGG AGGTGACTCCCCGGACAGCTCAACCCCAAAGCTTTCGCGGG < 41bp 0.752313841038803 0.331337287119289 0.19427425 0.11869997 prediction 0.504627682077606 Functional Loss - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46719105 chr22:46719109 synonymous SNV . 0 25 hm5C_associated_SNPs_64524 0 0 1 0 2 GTSE1 chr22:46719159 5'GT 46719159 Upstream 51bp
chr11 67376948 67376948 1 + G C HNSC 67376944 + 67376924 67376964 41 CCCAAGTATCTGGTGGTGAACGCAGACGAGGGGGAGCCGGG CCCAAGTATCTGGTGGTGAACGCACACGAGGGGGAGCCGGG < 41bp 0.824631525773667 0.572319509346949 0.5217489 0.35626018 prediction 0.504624032853437 Functional Loss - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67376944 chr11:67376948 nonsynonymous SNV 0.935 5 25 hm5C_associated_SNPs_64525 0 0 1 0 1 NDUFV1 chr11:67376923 3'AG 67376923 Downstream 26bp
chr2 26677542 26677542 1 + G T CESC 26677540 + 26677520 26677560 41 CGCGGGCCCCGCTGAGGGTACAGAAGAATGTGCGTGACAAC CGCGGGCCCCGCTGAGGGTACATAAGAATGTGCGTGACAAC < 41bp 0.752307202443856 0.409353275991874 0.70513034 0.37155277 prediction 0.504614404887711 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26677540 chr2:26677542 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_64529 0 0 0 0 1 DRC1 chr2:26677515 3'AG 26677515 Downstream 28bp
chr3 50152983 50152983 1 + C T SKCM 50152981 + 50152961 50153001 41 TGGCCTGTCTGCTCTGCCGGCGCCAGTTCCCGAACAAAGAT TGGCCTGTCTGCTCTGCCGGCGTCAGTTCCCGAACAAAGAT < 41bp 0.752306958956278 0.459214373569092 0.23837677 0.20884752 prediction 0.504613917912556 Functional Loss - RBM5 ENSG00000003756 CDS Human protein_coding chr3:50152981 chr3:50152983 synonymous SNV . 0 23 hm5C_associated_SNPs_64530 0 0 1 0 1 RBM5 chr3:50153040 5'GT 50153040 Upstream 58bp
chr2 29259480 29259480 1 + C T BRCA 29259478 + 29259458 29259498 41 CAGTGGGCGCTGGAGTCCTTCGCCAAGATGATCCCCCTCCT CAGTGGGCGCTGGAGTCCTTCGTCAAGATGATCCCCCTCCT < 41bp 0.827214445611473 0.574911480371084 0.33700582 0.23055345 prediction 0.504605930480778 Functional Loss - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29259478 chr2:29259480 nonsynonymous SNV 0.201 0 23 hm5C_associated_SNPs_64531 0 0 0 0 1 TOGARAM2 chr2:29259407 3'AG 29259407 Downstream 74bp
chr11 6291949 6291949 1 + C T COAD 6291947 + 6291927 6291967 41 CGTGGCCTACGGGCTTATCTCTCGCGAGCTCTACTTAGGGC CGTGGCCTACGGGCTTATCTCTTGCGAGCTCTACTTAGGGC < 41bp 0.799691163316734 0.547402959283982 0.29369652 0.09721857 prediction 0.504576408065503 Functional Loss - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6291947 chr11:6291949 nonsynonymous SNV 0.992 3 23 hm5C_associated_SNPs_64534 0 0 0 0 3 CCKBR chr11:6291876 3'AG 6291876 Downstream 74bp
chr11 6291949 6291949 1 + C T COAD 6291947 + 6291927 6291967 41 CGTGGCCTACGGGCTTATCTCTCGCGAGCTCTACTTAGGGC CGTGGCCTACGGGCTTATCTCTTGCGAGCTCTACTTAGGGC < 41bp 0.799691163316734 0.547402959283982 0.29369652 0.09721857 prediction 0.504576408065503 Functional Loss - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6291947 chr11:6291949 nonsynonymous SNV 0.992 3 23 hm5C_associated_SNPs_64534 0 0 0 0 3 CCKBR chr11:6292033 5'GT 6292033 Upstream 85bp
chr11 6291949 6291949 1 + C T COAD 6291947 + 6291927 6291967 41 CGTGGCCTACGGGCTTATCTCTCGCGAGCTCTACTTAGGGC CGTGGCCTACGGGCTTATCTCTTGCGAGCTCTACTTAGGGC < 41bp 0.799691163316734 0.547402959283982 0.29369652 0.09721857 prediction 0.504576408065503 Functional Loss - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6291947 chr11:6291949 nonsynonymous SNV 0.992 3 23 hm5C_associated_SNPs_64534 0 0 0 0 3 CCKBR chr11:6292048 5'GT 6292048 Upstream 100bp
chr19 16962273 16962273 1 + C T rs149541599 16962271 + 16962251 16962291 41 ACAGCGTGCAGAAGAACGAGCACGACAAGACCCCGGAGCAC ACAGCGTGCAGAAGAACGAGCATGACAAGACCCCGGAGCAC < 41bp 0.771705772128292 0.519426671200604 0.30190235 0.3763346 prediction 0.504558201855377 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16962271 chr19:16962273 synonymous SNV . 0 23 hm5C_associated_SNPs_64537 0 0 1 0 2 SIN3B chr19:16962223 3'AG 16962223 Downstream 51bp
chr19 16962273 16962273 1 + C T rs149541599 16962271 + 16962251 16962291 41 ACAGCGTGCAGAAGAACGAGCACGACAAGACCCCGGAGCAC ACAGCGTGCAGAAGAACGAGCATGACAAGACCCCGGAGCAC < 41bp 0.771705772128292 0.519426671200604 0.30190235 0.3763346 prediction 0.504558201855377 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16962271 chr19:16962273 synonymous SNV . 0 23 hm5C_associated_SNPs_64537 0 0 1 0 2 SIN3B chr19:16962345 5'GT 16962345 Upstream 73bp
chr20 36977999 36977999 1 + C T UCEC 36977997 + 36977977 36978017 41 CAGAGTGAGCTGCTCAGGATCACGCTGCCTGACTTCACCGG CAGAGTGAGCTGCTCAGGATCATGCTGCCTGACTTCACCGG < 41bp 0.758303884854651 0.506029662290486 0.5718248 0.5303398 prediction 0.504548445128329 Functional Loss - LBP ENSG00000129988 CDS Human protein_coding chr20:36977997 chr20:36977999 nonsynonymous SNV 0.754 1 23 hm5C_associated_SNPs_64538 0 0 0 0 2 LBP chr20:36977951 3'AG 36977951 Downstream 49bp
chr20 36977999 36977999 1 + C T UCEC 36977997 + 36977977 36978017 41 CAGAGTGAGCTGCTCAGGATCACGCTGCCTGACTTCACCGG CAGAGTGAGCTGCTCAGGATCATGCTGCCTGACTTCACCGG < 41bp 0.758303884854651 0.506029662290486 0.5718248 0.5303398 prediction 0.504548445128329 Functional Loss - LBP ENSG00000129988 CDS Human protein_coding chr20:36977997 chr20:36977999 nonsynonymous SNV 0.754 1 23 hm5C_associated_SNPs_64538 0 0 0 0 2 LBP chr20:36978065 5'GT 36978065 Upstream 67bp
chr5 54624616 54624616 1 + A C LIHC 54624615 + 54624595 54624635 41 TCTAGTATCTGCACATACCTCAGCGGGAAAAACAGTATGCG TCTAGTATCTGCACATACCTCCGCGGGAAAAACAGTATGCG < 41bp 0.75736383737614 0.50509748828538 0.32806832 0.1749554 prediction 0.50453269818152 Functional Loss - SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54624615 chr5:54624616 synonymous SNV . 0 22 hm5C_associated_SNPs_64541 0 0 1 0 2 SKIV2L2 chr5:54624527 3'AG 54624527 Downstream 90bp
chr5 54624616 54624616 1 + A C LIHC 54624615 + 54624595 54624635 41 TCTAGTATCTGCACATACCTCAGCGGGAAAAACAGTATGCG TCTAGTATCTGCACATACCTCCGCGGGAAAAACAGTATGCG < 41bp 0.75736383737614 0.50509748828538 0.32806832 0.1749554 prediction 0.50453269818152 Functional Loss - SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54624615 chr5:54624616 synonymous SNV . 0 22 hm5C_associated_SNPs_64541 0 0 1 0 2 SKIV2L2 chr5:54624639 5'GT 54624639 Upstream 24bp
chr9 90264928 90264928 1 + G T STAD 90264925 + 90264905 90264945 41 GCCGGCTGTAACGTGAACATCAAGAACCGAGAAGGAGAGAC GCCGGCTGTAACGTGAACATCAATAACCGAGAAGGAGAGAC < 41bp 0.752261786629337 0.369672591686271 0.20799753 0.11539009 prediction 0.504523573258673 Functional Loss - DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90264925 chr9:90264928 nonsynonymous SNV 0.954 2 24 hm5C_associated_SNPs_64542 0 0 1 0 1 DAPK1 chr9:90264836 3'AG 90264836 Downstream 93bp
chr7 37923949 37923949 1 + G T LUSC 37923946 + 37923926 37923966 41 AAGATGAAGACTTCAAAATACTGGAGCAAAGACAAGTAGTA AAGATGAAGACTTCAAAATACTGTAGCAAAGACAAGTAGTA < 41bp 0.752248227231562 0.40343471861091 0.19580138 0.069538146 prediction 0.504496454463123 Functional Loss - NME8 ENSG00000086288 CDS Human protein_coding chr7:37923946 chr7:37923949 stopgain 0.814 0 24 hm5C_associated_SNPs_64545 0 0 0 0 1 NME8 chr7:37923905 3'AG 37923905 Downstream 45bp
chr12 50484057 50484057 1 + C T UCEC 50484055 + 50484035 50484075 41 TAAATTAGACCCCCGCCTAGCTCGACTCCTGGGCATCCATA TAAATTAGACCCCCGCCTAGCTTGACTCCTGGGCATCCATA < 41bp 0.752239607553943 0.455264374031133 0.08674082 0.06481156 prediction 0.504479215107886 Functional Loss - SMARCD1 ENSG00000066117 CDS Human protein_coding chr12:50484055 chr12:50484057 stopgain 0.998 1 23 hm5C_associated_SNPs_64546 0 0 1 0 1 SMARCD1 chr12:50484024 3'AG 50484024 Downstream 34bp
chr12 111284872 111284872 1 + G C rs2339635 111284871 + 111284851 111284891 41 GCAGCCGTCGGACAAGCGGCCGGAGCAGCCACGGACAAGCA GCAGCCGTCGGACAAGCGGCCCGAGCAGCCACGGACAAGCA < 41bp 0.75222328250054 0.466961297031358 0.77653 0.21357337 prediction 0.504446565001081 Functional Loss - CCDC63 ENSG00000173093 UTR5 Human protein_coding chr12:111284871 chr12:111284872 . . 0 22 hm5C_associated_SNPs_64551 0 0 0 0 1 CCDC63 chr12:111284909 5'GT 111284909 Upstream 38bp
chr7 128315858 128315858 1 + G T ACC 128315855 + 128315835 128315875 41 TGGCCAATGTTACCTGGCCCCAGGGTCCATTTACCACCTGG TGGCCAATGTTACCTGGCCCCAGTGTCCATTTACCACCTGG < 41bp 0.918460617894912 0.666238121238575 0.789245 0.048312902 prediction 0.504444993312673 Functional Loss - FAM71F2 ENSG00000205085 CDS Human protein_coding chr7:128315855 chr7:128315858 nonsynonymous SNV 0.124 2 24 hm5C_associated_SNPs_64552 0 0 0 1 1 FAM71F2 chr7:128315913 5'GT 128315913 Upstream 56bp
chr14 74040111 74040111 1 + G C rs118157277 74040107 + 74040087 74040127 41 CCAAGAACCTGGGCCCTTTCCTGGGATTGTGGACATGTTCG CCAAGAACCTGGGCCCTTTCCTGGCATTGTGGACATGTTCG < 41bp 0.752219027329403 0.45714566971564 0.8244701 0.45898017 prediction 0.504438054658805 Functional Loss - ACOT2 ENSG00000119673 CDS Human protein_coding chr14:74040107 chr14:74040111 synonymous SNV . 0 25 hm5C_associated_SNPs_64553 0 0 1 0 1 ACOT2 chr14:74040092 3'AG 74040092 Downstream 20bp
chr22 50649075 50649075 1 + C T GBM 50649073 + 50649053 50649093 41 GTGGCAGGTACGACCCCGACCACGTGTGCAATGCCTCCGAC GTGGCAGGTACGACCCCGACCATGTGTGCAATGCCTCCGAC < 41bp 0.754851705040366 0.502633693365569 0.4728973 0.37494618 prediction 0.504436023349594 Functional Loss - SELENOO ENSG00000073169 CDS Human protein_coding chr22:50649073 chr22:50649075 unknown . 0 23 hm5C_associated_SNPs_64554 0 0 1 0 1 SELENOO chr22:50649060 3'AG 50649060 Downstream 16bp
chr16 31382413 31382413 1 + G A PRAD 31382410 + 31382390 31382430 41 CTCTCCTCTGGCCAGCGGATCGCGGGCTCCCAGCTCTCCTC CTCTCCTCTGGCCAGCGGATCGCAGGCTCCCAGCTCTCCTC < 41bp 0.76149167994791 0.509279647348781 0.91985667 0.23576477 prediction 0.504424065198257 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31382410 chr16:31382413 synonymous SNV . 0 24 hm5C_associated_SNPs_64558 0 0 0 0 1 ITGAX chr16:31382405 3'AG 31382405 Downstream 9bp
chr17 57724940 57724940 1 + C T PRAD 57724938 + 57724918 57724958 41 AGCCAGTGAAAATGTTTGATCGCCATTCTAGCCTTGCAGGG AGCCAGTGAAAATGTTTGATCGTCATTCTAGCCTTGCAGGG < 41bp 0.752211292681632 0.468603107320258 0.829046 0.6083439 prediction 0.504422585363264 Functional Loss - CLTC ENSG00000141367 CDS Human protein_coding chr17:57724938 chr17:57724940 synonymous SNV . 0 23 hm5C_associated_SNPs_64559 0 0 1 0 1 CLTC chr17:57725027 5'GT 57725027 Upstream 88bp
chr16 11009480 11009480 1 + C T BRCA 11009478 + 11009458 11009498 41 CCCAAACTGGTGCGGATCCTCACGGCCTTTTCCTCCCTGCA CCCAAACTGGTGCGGATCCTCATGGCCTTTTCCTCCCTGCA < 41bp 0.770174261524459 0.517967633880872 0.68528086 0.31020167 prediction 0.504413255287174 Functional Loss - CIITA ENSG00000179583 CDS Human protein_coding chr16:11009478 chr16:11009480 nonsynonymous SNV 0.013 0 23 hm5C_associated_SNPs_64562 0 0 0 0 2 CIITA chr16:11009427 3'AG 11009427 Downstream 54bp
chr16 11009480 11009480 1 + C T BRCA 11009478 + 11009458 11009498 41 CCCAAACTGGTGCGGATCCTCACGGCCTTTTCCTCCCTGCA CCCAAACTGGTGCGGATCCTCATGGCCTTTTCCTCCCTGCA < 41bp 0.770174261524459 0.517967633880872 0.68528086 0.31020167 prediction 0.504413255287174 Functional Loss - CIITA ENSG00000179583 CDS Human protein_coding chr16:11009478 chr16:11009480 nonsynonymous SNV 0.013 0 23 hm5C_associated_SNPs_64562 0 0 0 0 2 CIITA chr16:11009507 5'GT 11009507 Upstream 28bp
chr3 11078627 11078627 1 + C T SKCM 11078625 + 11078605 11078645 41 GAGCAGCCCCAGGCGGGCAGCTCCACCAGCAAGGAGGCCTA GAGCAGCCCCAGGCGGGCAGCTTCACCAGCAAGGAGGCCTA < 41bp 0.752199161794892 0.476517768252191 0.89690244 0.26369852 prediction 0.504398323589785 Functional Loss - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11078625 chr3:11078627 nonsynonymous SNV 0.990 0 23 hm5C_associated_SNPs_64566 0 0 0 0 1 SLC6A1 chr3:11078548 3'AG 11078548 Downstream 80bp
chr11 70263125 70263125 1 + C T LUSC 70263123 + 70263103 70263143 41 TGCCCTGTCTCTCCAGACTACTCCAGTGGTTTTGGCGGCAA TGCCCTGTCTCTCCAGACTACTTCAGTGGTTTTGGCGGCAA < 41bp 0.84144722813468 0.589252940892204 0.9558762 0.4750118 prediction 0.504388574484951 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70263123 chr11:70263125 nonsynonymous SNV 0.910 4 23 hm5C_associated_SNPs_64568 0 0 1 0 1 CTTN chr11:70263119 3'AG 70263119 Downstream 7bp
chr16 1814128 1814128 1 + G C UCS 1814127 + 1814107 1814147 41 TCCCTGCAGCTGAGTCCCAACGGGGGCCAGGAGGACACGCG TCCCTGCAGCTGAGTCCCAACCGGGGCCAGGAGGACACGCG < 41bp 0.752191567254423 0.435029880724964 0.91039634 0.9188029 prediction 0.504383134508846 Functional Loss - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1814127 chr16:1814128 nonsynonymous SNV 0.829 3 22 hm5C_associated_SNPs_64569 0 0 1 0 2 MAPK8IP3 chr16:1814116 3'AG 1814116 Downstream 13bp
chr16 1814128 1814128 1 + G C UCS 1814127 + 1814107 1814147 41 TCCCTGCAGCTGAGTCCCAACGGGGGCCAGGAGGACACGCG TCCCTGCAGCTGAGTCCCAACCGGGGCCAGGAGGACACGCG < 41bp 0.752191567254423 0.435029880724964 0.91039634 0.9188029 prediction 0.504383134508846 Functional Loss - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1814127 chr16:1814128 nonsynonymous SNV 0.829 3 22 hm5C_associated_SNPs_64569 0 0 1 0 2 MAPK8IP3 chr16:1814211 5'GT 1814211 Upstream 84bp
chr14 74567910 74567910 1 + G T COAD 74567908 + 74567888 74567928 41 TGGAGAAGGTTCGAGGCCTACAGAACCTAGCCTATCAGCTG TGGAGAAGGTTCGAGGCCTACATAACCTAGCCTATCAGCTG < 41bp 0.752186431877742 0.411165718066668 0.19122693 0.08325902 prediction 0.504372863755484 Functional Loss - LIN52 ENSG00000205659 CDS Human protein_coding chr14:74567908 chr14:74567910 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_64571 0 0 1 0 1 LIN52 chr14:74567858 3'AG 74567858 Downstream 53bp
chr16 1705889 1705889 1 + C T UCEC 1705887 + 1705867 1705907 41 CGGGCACTCAGCGGAAGACACTCGAGGAGCGGCAGCTGCAG CGGGCACTCAGCGGAAGACACTTGAGGAGCGGCAGCTGCAG < 41bp 0.808630297472011 0.55644417658898 0.5245293 0.2621335 prediction 0.504372241766064 Functional Loss - CRAMP1 ENSG00000007545 CDS Human protein_coding chr16:1705887 chr16:1705889 synonymous SNV . 0 23 hm5C_associated_SNPs_64572 0 0 1 0 2 CRAMP1 chr16:1705878 3'AG 1705878 Downstream 12bp
chr16 1705889 1705889 1 + C T UCEC 1705887 + 1705867 1705907 41 CGGGCACTCAGCGGAAGACACTCGAGGAGCGGCAGCTGCAG CGGGCACTCAGCGGAAGACACTTGAGGAGCGGCAGCTGCAG < 41bp 0.808630297472011 0.55644417658898 0.5245293 0.2621335 prediction 0.504372241766064 Functional Loss - CRAMP1 ENSG00000007545 CDS Human protein_coding chr16:1705887 chr16:1705889 synonymous SNV . 0 23 hm5C_associated_SNPs_64572 0 0 1 0 2 CRAMP1 chr16:1705937 5'GT 1705937 Upstream 49bp
chr2 179188975 179188975 1 + G T UCEC 179188973 + 179188953 179188993 41 TAAGTCGGCAATTGCTAGAACCGGAGCCAGTCCCCCTCTCC TAAGTCGGCAATTGCTAGAACCTGAGCCAGTCCCCCTCTCC < 41bp 0.75218466249947 0.407167017061592 0.94235766 0.7891972 prediction 0.50436932499894 Functional Loss - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179188973 chr2:179188975 synonymous SNV . 0 23 hm5C_associated_SNPs_64573 0 0 0 0 1 OSBPL6 chr2:179188996 5'GT 179188996 Upstream 22bp
chr1 160321032 160321032 1 + G T OV 160321030 + 160321010 160321050 41 AGTGCTATCAAGATCACAACCTGAGTCAGAATGGCTCAGCA AGTGCTATCAAGATCACAACCTTAGTCAGAATGGCTCAGCA < 41bp 0.752178785311632 0.409892883745161 0.1266875 0.057914287 prediction 0.504357570623263 Functional Loss - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160321030 chr1:160321032 synonymous SNV . 0 23 hm5C_associated_SNPs_64577 0 0 1 0 1 NCSTN chr1:160321012 3'AG 160321012 Downstream 21bp
chr5 72370577 72370577 1 + C T COAD 72370575 + 72370555 72370595 41 TGTGTATATTCTAGGTGTGTCACGGGGTCCCAGCCCTGTCA TGTGTATATTCTAGGTGTGTCATGGGGTCCCAGCCCTGTCA < 41bp 0.752178750273689 0.484259918990785 0.89146847 0.8902749 prediction 0.504357500547378 Functional Loss - FCHO2 ENSG00000157107 CDS Human protein_coding chr5:72370575 chr5:72370577 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_64578 0 0 1 0 1 FCHO2 chr5:72370569 3'AG 72370569 Downstream 9bp
chrX 99917265 99917265 1 + C T UCEC 99917263 + 99917243 99917283 41 TTATCACAGCAGCCTGGGCACGCGTTGTGAGCTCTCCTGTG TTATCACAGCAGCCTGGGCACGTGTTGTGAGCTCTCCTGTG < 41bp 0.7801365384436 0.527958166175426 0.26717025 0.35302734 prediction 0.504356744536348 Functional Loss - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99917263 chrX:99917265 nonsynonymous SNV 0.939 3 23 hm5C_associated_SNPs_64579 1 0 0 0 2 SRPX2 chrX:99917173 3'AG 99917173 Downstream 93bp
chrX 99917265 99917265 1 + C T UCEC 99917263 + 99917243 99917283 41 TTATCACAGCAGCCTGGGCACGCGTTGTGAGCTCTCCTGTG TTATCACAGCAGCCTGGGCACGTGTTGTGAGCTCTCCTGTG < 41bp 0.7801365384436 0.527958166175426 0.26717025 0.35302734 prediction 0.504356744536348 Functional Loss - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99917263 chrX:99917265 nonsynonymous SNV 0.939 3 23 hm5C_associated_SNPs_64579 1 0 0 0 2 SRPX2 chrX:99917364 5'GT 99917364 Upstream 100bp
chrX 47101492 47101492 1 + G T GBM 47101490 + 47101470 47101510 41 ACTATCAACAGGAGGTGGCACAGGAGGCATGGCAAAACCAC ACTATCAACAGGAGGTGGCACATGAGGCATGGCAAAACCAC < 41bp 0.895021617313107 0.642848422072537 0.39962786 0.25966096 prediction 0.504346390481139 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47101490 chrX:47101492 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_64582 0 0 0 0 1 USP11 chrX:47101481 3'AG 47101481 Downstream 12bp
chr16 84884226 84884226 1 + A T UCEC 84884222 + 84884202 84884242 41 GTTGTGCTGTGAACACCTGCCGGAAGATGACTGTCTGGGGA GTTGTGCTGTGAACACCTGCCGGATGATGACTGTCTGGGGA < 41bp 0.752162715301198 0.436127081771102 0.7956202 0.79996395 prediction 0.504325430602396 Functional Loss - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84884222 chr16:84884226 nonsynonymous SNV 0.680 1 25 hm5C_associated_SNPs_64584 0 0 0 0 2 CRISPLD2 chr16:84884174 3'AG 84884174 Downstream 53bp
chr16 84884226 84884226 1 + A T UCEC 84884222 + 84884202 84884242 41 GTTGTGCTGTGAACACCTGCCGGAAGATGACTGTCTGGGGA GTTGTGCTGTGAACACCTGCCGGATGATGACTGTCTGGGGA < 41bp 0.752162715301198 0.436127081771102 0.7956202 0.79996395 prediction 0.504325430602396 Functional Loss - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84884222 chr16:84884226 nonsynonymous SNV 0.680 1 25 hm5C_associated_SNPs_64584 0 0 0 0 2 CRISPLD2 chr16:84884289 5'GT 84884289 Upstream 64bp
chr3 140178441 140178441 1 + G T GBM 140178439 + 140178419 140178459 41 ACTGCAGGACTGCTGGTGGACAGCAGTGAGATGATCTTCAA ACTGCAGGACTGCTGGTGGACATCAGTGAGATGATCTTCAA < 41bp 0.752161626619021 0.45245627433335 0.38654482 0.22863933 prediction 0.504323253238041 Functional Loss - CLSTN2 ENSG00000158258 CDS Human protein_coding chr3:140178439 chr3:140178441 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_64585 0 0 0 0 1 CLSTN2 chr3:140178363 3'AG 140178363 Downstream 79bp
chr2 3627721 3627721 1 + C T UCEC 3627719 + 3627699 3627739 41 GCCGTACTCTGACAGCTGTGCACGATGCCATCCTTGAGGAC GCCGTACTCTGACAGCTGTGCATGATGCCATCCTTGAGGAC < 41bp 0.764356543810145 0.512195280547981 0.0644362 0.15058663 prediction 0.504322526524327 Functional Loss - RPS7 ENSG00000171863 CDS Human protein_coding chr2:3627719 chr2:3627721 synonymous SNV . 0 23 hm5C_associated_SNPs_64586 0 0 1 0 1 RPS7 chr2:3627700 3'AG 3627700 Downstream 22bp
chr19 43866321 43866321 1 + G T BLCA 43866319 + 43866299 43866339 41 TTGAACCACACCAGACAAATCGGGATCTTCTCTGCGCGTGA TTGAACCACACCAGACAAATCGTGATCTTCTCTGCGCGTGA < 41bp 0.875807091052419 0.623652555216935 0.7678839 0.18562686 prediction 0.504309071670969 Functional Loss - CD177 ENSG00000204936 CDS Human protein_coding chr19:43866319 chr19:43866321 unknown 0.150 2 23 hm5C_associated_SNPs_64587 0 0 0 0 1 CD177 chr19:43866240 3'AG 43866240 Downstream 82bp
chr3 93768345 93768345 1 + C T UCEC 93768343 + 93768323 93768363 41 CTGTGCTCCTGAGAGTCCAACGCCACCCCCACCCCCTCCTC CTGTGCTCCTGAGAGTCCAACGTCACCCCCACCCCCTCCTC < 41bp 0.808527504901563 0.556377618039328 0.07411888 0.056340903 prediction 0.504299773724471 Functional Loss - ARL13B ENSG00000169379 CDS Human protein_coding chr3:93768343 chr3:93768345 nonsynonymous SNV 0.700 3 23 hm5C_associated_SNPs_64588 0 0 1 0 2 ARL13B chr3:93768250 3'AG 93768250 Downstream 96bp
chr3 93768345 93768345 1 + C T UCEC 93768343 + 93768323 93768363 41 CTGTGCTCCTGAGAGTCCAACGCCACCCCCACCCCCTCCTC CTGTGCTCCTGAGAGTCCAACGTCACCCCCACCCCCTCCTC < 41bp 0.808527504901563 0.556377618039328 0.07411888 0.056340903 prediction 0.504299773724471 Functional Loss - ARL13B ENSG00000169379 CDS Human protein_coding chr3:93768343 chr3:93768345 nonsynonymous SNV 0.700 3 23 hm5C_associated_SNPs_64588 0 0 1 0 2 ARL13B chr3:93768366 5'GT 93768366 Upstream 22bp
chr1 20417104 20417104 1 + G T HNSC 20417101 + 20417081 20417121 41 GTGAACCTCTGTGCCTGTGACCGGAAGCTCGTCTACTGCCT GTGAACCTCTGTGCCTGTGACCGTAAGCTCGTCTACTGCCT < 41bp 0.752138022323527 0.357189674617894 0.8536254 0.29718238 prediction 0.504276044647055 Functional Loss - PLA2G5 ENSG00000127472 CDS Human protein_coding chr1:20417101 chr1:20417104 synonymous SNV . 0 24 hm5C_associated_SNPs_64590 0 0 0 0 1 PLA2G5 chr1:20417061 3'AG 20417061 Downstream 44bp
chr1 164761883 164761883 1 + G T PAAD 164761881 + 164761861 164761901 41 GGCGGCGGCTTCTGGAGGGGCAGGTTCAGACAACTCAGTGG GGCGGCGGCTTCTGGAGGGGCATGTTCAGACAACTCAGTGG < 41bp 0.752129410407312 0.405262057735784 0.8321203 0.8388059 prediction 0.504258820814623 Functional Loss - PBX1 ENSG00000185630 CDS Human protein_coding chr1:164761881 chr1:164761883 nonsynonymous SNV 0.965 1 23 hm5C_associated_SNPs_64592 0 0 0 0 1 PBX1 chr1:164761975 5'GT 164761975 Upstream 93bp
chr17 4906118 4906118 1 + C T STAD 4906116 + 4906096 4906136 41 CAGCGCTGCCATGACCAGCTCACGGGGCTGGACTCGGAGAA CAGCGCTGCCATGACCAGCTCATGGGGCTGGACTCGGAGAA < 41bp 0.752127566010722 0.489856581379686 0.58354616 0.67709124 prediction 0.504255132021443 Functional Loss - KIF1C ENSG00000129250 CDS Human protein_coding chr17:4906116 chr17:4906118 nonsynonymous SNV 0.746 2 23 hm5C_associated_SNPs_64593 0 0 1 0 2 KIF1C chr17:4906026 3'AG 4906026 Downstream 93bp
chr17 4906118 4906118 1 + C T STAD 4906116 + 4906096 4906136 41 CAGCGCTGCCATGACCAGCTCACGGGGCTGGACTCGGAGAA CAGCGCTGCCATGACCAGCTCATGGGGCTGGACTCGGAGAA < 41bp 0.752127566010722 0.489856581379686 0.58354616 0.67709124 prediction 0.504255132021443 Functional Loss - KIF1C ENSG00000129250 CDS Human protein_coding chr17:4906116 chr17:4906118 nonsynonymous SNV 0.746 2 23 hm5C_associated_SNPs_64593 0 0 1 0 2 KIF1C chr17:4906137 5'GT 4906137 Upstream 20bp
chr1 151994969 151994969 1 + G T GBM 151994966 + 151994946 151994986 41 TTGAGGAGGCTGAGAAAGTGCGGGAATCACGTGCCCCCAGG TTGAGGAGGCTGAGAAAGTGCGGTAATCACGTGCCCCCAGG < 41bp 0.889550925912122 0.637429640681323 0.8827843 0.4332424 prediction 0.504242570461599 Functional Loss - NBPF18P ENSG00000229021;ENSG00000240667 ncRNA_exonic Human other chr1:151994966 chr1:151994969 . . 0 24 hm5C_associated_SNPs_64596 0 0 0 0 2 NBPF18P chr1:151994913 3'AG 151994913 Downstream 57bp
chr1 151994969 151994969 1 + G T GBM 151994966 + 151994946 151994986 41 TTGAGGAGGCTGAGAAAGTGCGGGAATCACGTGCCCCCAGG TTGAGGAGGCTGAGAAAGTGCGGTAATCACGTGCCCCCAGG < 41bp 0.889550925912122 0.637429640681323 0.8827843 0.4332424 prediction 0.504242570461599 Functional Loss - NBPF18P ENSG00000229021;ENSG00000240667 ncRNA_exonic Human antisense chr1:151994966 chr1:151994969 . . 0 24 hm5C_associated_SNPs_64596 0 0 0 0 2 NBPF18P chr1:151994985 5'GT 151994985 Upstream 17bp
chrX 134713730 134713730 1 + G T UCS 134713727 + 134713707 134713747 41 TTCCAGATGCTACTATCATTCACGATGGCCATGAGGAGAAG TTCCAGATGCTACTATCATTCACTATGGCCATGAGGAGAAG < 41bp 0.909254431376425 0.657139366922762 0.1616649 0.04019752 prediction 0.504230128907325 Functional Loss - INTS6L ENSG00000165359 CDS Human protein_coding chrX:134713727 chrX:134713730 nonsynonymous SNV 0.021 1 24 hm5C_associated_SNPs_64597 0 0 1 0 1 INTS6L chrX:134713713 3'AG 134713713 Downstream 18bp
chr17 40835877 40835877 1 + C T UCEC 40835875 + 40835855 40835895 41 GCTGGTGGGTCCCCTGTATGCACGCTCCCTGGGCGCCTCCT GCTGGTGGGTCCCCTGTATGCATGCTCCCTGGGCGCCTCCT < 41bp 0.752113860192611 0.496385313848876 0.15796936 0.11565706 prediction 0.504227720385223 Functional Loss - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40835875 chr17:40835877 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_64598 0 0 0 0 2 CNTNAP1 chr17:40835839 3'AG 40835839 Downstream 39bp
chr17 40835877 40835877 1 + C T UCEC 40835875 + 40835855 40835895 41 GCTGGTGGGTCCCCTGTATGCACGCTCCCTGGGCGCCTCCT GCTGGTGGGTCCCCTGTATGCATGCTCCCTGGGCGCCTCCT < 41bp 0.752113860192611 0.496385313848876 0.15796936 0.11565706 prediction 0.504227720385223 Functional Loss - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40835875 chr17:40835877 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_64598 0 0 0 0 2 CNTNAP1 chr17:40835940 5'GT 40835940 Upstream 64bp
chr19 56363726 56363726 1 + G T UCEC 56363724 + 56363704 56363744 41 GAAGGTCATGAGGGAGAGAACAGGTGAGGGAGTCTGGGAAG GAAGGTCATGAGGGAGAGAACATGTGAGGGAGTCTGGGAAG < 41bp 0.880977401580632 0.628866890185806 0.91316926 0.40609193 prediction 0.504221022789652 Functional Loss - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56363724 chr19:56363726 stopgain 0.045 0 23 hm5C_associated_SNPs_64599 0 0 0 0 1 NLRP4 chr19:56363726 5'GT 56363726 Upstream 1bp
chr7 150093692 150093692 1 + G T COAD 150093689 + 150093669 150093709 41 GCCATGCTTGTGGAGAAGGACAAGGAGAACATATTTCAGCA GCCATGCTTGTGGAGAAGGACAATGAGAACATATTTCAGCA < 41bp 0.752101673242727 0.370103620140852 0.83704376 0.36199814 prediction 0.504203346485454 Functional Loss - ZNF775 ENSG00000196456 CDS Human protein_coding chr7:150093689 chr7:150093692 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_64601 0 0 0 0 1 ZNF775 chr7:150093601 3'AG 150093601 Downstream 92bp
chr7 36460277 36460277 1 + A C LUAD 36460273 + 36460253 36460293 41 CAATAAAGCAGGTGATTGTTCGGAAGGAAGATGTTACTTCA CAATAAAGCAGGTGATTGTTCGGACGGAAGATGTTACTTCA < 41bp 0.752095878168624 0.34923804749338 0.4265925 0.80241513 prediction 0.504191756337248 Functional Loss - ANLN ENSG00000011426 CDS Human protein_coding chr7:36460273 chr7:36460277 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_64602 0 0 1 0 2 ANLN chr7:36460206 3'AG 36460206 Downstream 72bp
chr7 36460277 36460277 1 + A C LUAD 36460273 + 36460253 36460293 41 CAATAAAGCAGGTGATTGTTCGGAAGGAAGATGTTACTTCA CAATAAAGCAGGTGATTGTTCGGACGGAAGATGTTACTTCA < 41bp 0.752095878168624 0.34923804749338 0.4265925 0.80241513 prediction 0.504191756337248 Functional Loss - ANLN ENSG00000011426 CDS Human protein_coding chr7:36460273 chr7:36460277 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_64602 0 0 1 0 2 ANLN chr7:36460353 5'GT 36460353 Upstream 77bp
chr3 172482258 172482258 1 + C T LUSC 172482256 + 172482236 172482276 41 ATAGGGTCACTCCTAGATATCTCCAACACACCAGAGTCTAG ATAGGGTCACTCCTAGATATCTTCAACACACCAGAGTCTAG < 41bp 0.752090998401266 0.458330350563057 0.9228791 0.015128046 prediction 0.504181996802533 Functional Loss - ECT2 ENSG00000114346 CDS Human protein_coding chr3:172482256 chr3:172482258 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_64603 0 0 1 0 1 ECT2 chr3:172482290 5'GT 172482290 Upstream 33bp
chr10 71008426 71008426 1 + C T GBM 71008424 + 71008404 71008444 41 ATGGGCTGAAGAAGAAGAGCCACGGGCTGGCCACGGTCAGG ATGGGCTGAAGAAGAAGAGCCATGGGCTGGCCACGGTCAGG < 41bp 0.761317237387798 0.50922947303619 0.27491033 0.30065954 prediction 0.504175528703216 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71008424 chr10:71008426 synonymous SNV . 0 23 hm5C_associated_SNPs_64604 0 0 0 0 1 HKDC1 chr10:71008484 5'GT 71008484 Upstream 59bp
chr17 33319629 33319629 1 + C T UCEC 33319627 + 33319607 33319647 41 GTGGAGCGGGTCCTTCACAACGCGCAGGAGGTGGAGAAGGA GTGGAGCGGGTCCTTCACAACGTGCAGGAGGTGGAGAAGGA < 41bp 0.752082404675956 0.473425869720456 0.11043587 0.35519895 prediction 0.504164809351912 Functional Loss - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33319627 chr17:33319629 nonsynonymous SNV 0.637 1 23 hm5C_associated_SNPs_64605 0 0 1 0 2 LIG3 chr17:33319543 3'AG 33319543 Downstream 87bp
chr17 33319629 33319629 1 + C T UCEC 33319627 + 33319607 33319647 41 GTGGAGCGGGTCCTTCACAACGCGCAGGAGGTGGAGAAGGA GTGGAGCGGGTCCTTCACAACGTGCAGGAGGTGGAGAAGGA < 41bp 0.752082404675956 0.473425869720456 0.11043587 0.35519895 prediction 0.504164809351912 Functional Loss - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33319627 chr17:33319629 nonsynonymous SNV 0.637 1 23 hm5C_associated_SNPs_64605 0 0 1 0 2 LIG3 chr17:33319711 5'GT 33319711 Upstream 83bp
chr8 98078430 98078430 1 + G T LUAD 98078427 + 98078407 98078447 41 CATCAACTTTTGGATCCAAGCTGGAGTGCCTGGTAAGACCA CATCAACTTTTGGATCCAAGCTGTAGTGCCTGGTAAGACCA < 41bp 0.887359633334883 0.635281469330619 0.6518018 0.13588285 prediction 0.504156328008528 Functional Loss - CPQ ENSG00000104324 CDS Human protein_coding chr8:98078427 chr8:98078430 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_64606 0 0 1 0 1 CPQ chr8:98078438 5'GT 98078438 Upstream 9bp
chr12 118577336 118577336 1 + C T COAD 118577334 + 118577314 118577354 41 GTCCTCTCCGATTATGTGGGCTCGGGGCCTCCCAAGGGCAC GTCCTCTCCGATTATGTGGGCTTGGGGCCTCCCAAGGGCAC < 41bp 0.752073575230686 0.476102160408177 0.1804252 0.17430937 prediction 0.504147150461373 Functional Loss - PEBP1 ENSG00000089220 CDS Human protein_coding chr12:118577334 chr12:118577336 nonsynonymous SNV 0.968 2 23 hm5C_associated_SNPs_64607 0 0 1 0 2 PEBP1 chr12:118577256 3'AG 118577256 Downstream 81bp
chr12 118577336 118577336 1 + C T COAD 118577334 + 118577314 118577354 41 GTCCTCTCCGATTATGTGGGCTCGGGGCCTCCCAAGGGCAC GTCCTCTCCGATTATGTGGGCTTGGGGCCTCCCAAGGGCAC < 41bp 0.752073575230686 0.476102160408177 0.1804252 0.17430937 prediction 0.504147150461373 Functional Loss - PEBP1 ENSG00000089220 CDS Human protein_coding chr12:118577334 chr12:118577336 nonsynonymous SNV 0.968 2 23 hm5C_associated_SNPs_64607 0 0 1 0 2 PEBP1 chr12:118577356 5'GT 118577356 Upstream 21bp
chr11 15243190 15243190 1 + C T rs61742947 15243188 + 15243168 15243208 41 TGGAGGAGATCGTGACAGCCCTCGTCAGTGAGTCACCCTGG TGGAGGAGATCGTGACAGCCCTTGTCAGTGAGTCACCCTGG < 41bp 0.752046755460158 0.485058868197385 0.22221935 0.14651543 prediction 0.504093510920316 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15243188 chr11:15243190 synonymous SNV . 0 23 hm5C_associated_SNPs_64609 0 0 0 0 1 INSC chr11:15243194 5'GT 15243194 Upstream 5bp
chr5 135389707 135389707 1 + G T rs190842339 135389705 + 135389685 135389725 41 CTTTTCAGACAAGCCGGCCTCGGCAATCATCTCTCTGGAAG CTTTTCAGACAAGCCGGCCTCGTCAATCATCTCTCTGGAAG < 41bp 0.873888220535578 0.621846533485886 0.42621768 0.2384122 prediction 0.504083374099383 Functional Loss - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135389705 chr5:135389707 nonsynonymous SNV 0.010 2 23 hm5C_associated_SNPs_64611 0 0 1 0 2 TGFBI chr5:135389632 3'AG 135389632 Downstream 76bp
chr5 135389707 135389707 1 + G T rs190842339 135389705 + 135389685 135389725 41 CTTTTCAGACAAGCCGGCCTCGGCAATCATCTCTCTGGAAG CTTTTCAGACAAGCCGGCCTCGTCAATCATCTCTCTGGAAG < 41bp 0.873888220535578 0.621846533485886 0.42621768 0.2384122 prediction 0.504083374099383 Functional Loss - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135389705 chr5:135389707 nonsynonymous SNV 0.010 2 23 hm5C_associated_SNPs_64611 0 0 1 0 2 TGFBI chr5:135389769 5'GT 135389769 Upstream 63bp
chr16 5132575 5132575 1 + G C STAD 5132571 + 5132551 5132591 41 GCCTAGCAGGGTCGGCGGACCTGGGTGTCTGTCTGCACACG GCCTAGCAGGGTCGGCGGACCTGGCTGTCTGTCTGCACACG < 41bp 0.832214277569964 0.580172895384399 0.90587884 0.5884544 prediction 0.50408276437113 Functional Loss - ALG1 ENSG00000033011 CDS Human protein_coding chr16:5132571 chr16:5132575 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_64612 0 0 1 0 1 ALG1 chr16:5132674 5'GT 5132674 Upstream 100bp
chrX 83116205 83116205 1 + G C LUAD 83116201 + 83116181 83116221 41 GGCAGGGGAAATGTCTCTTCCAAGGTTGTAAGTCCTCTTTT GGCAGGGGAAATGTCTCTTCCAAGCTTGTAAGTCCTCTTTT < 41bp 0.789095261246487 0.537055280621205 0.88360286 0.40844786 prediction 0.504079961250564 Functional Loss - CYLC1;CYLC1 ENSG00000183035 CDS Human protein_coding chrX:83116201 chrX:83116205 nonsynonymous SNV 0.073 1 25 hm5C_associated_SNPs_64613 0 0 0 0 1 CYLC1 chrX:83116207 5'GT 83116207 Upstream 3bp
chr15 22332698 22332698 1 + G T LUAD 22332695 + 22332675 22332715 41 GGGCAAGAGCATCTCTTTTTCAGGATGCCTGGCCCAGATCT GGGCAAGAGCATCTCTTTTTCAGTATGCCTGGCCCAGATCT < 41bp 0.869582038689938 0.617546461785859 0.9435508 0.85677 prediction 0.504071153808157 Functional Loss - LINC02203 ENSG00000259176 ncRNA_exonic Human other chr15:22332695 chr15:22332698 . . 0 24 hm5C_associated_SNPs_64614 0 0 0 0 1 LINC02203 chr15:22332776 5'GT 22332776 Upstream 79bp
chrX 69458123 69458123 1 + C T HNSC 69458121 + 69458101 69458141 41 TGAGCCATGGCACTGGCAACCTCGTGGGCATTGTAGTGGGA TGAGCCATGGCACTGGCAACCTTGTGGGCATTGTAGTGGGA < 41bp 0.793782822615095 0.541750549499704 0.07182938 0.037126273 prediction 0.504064546230781 Functional Loss - AWAT1 ENSG00000204195 CDS Human protein_coding chrX:69458121 chrX:69458123 synonymous SNV . 0 23 hm5C_associated_SNPs_64616 0 0 0 0 1 AWAT1 chrX:69458062 3'AG 69458062 Downstream 62bp
chr11 120918293 120918293 1 + G T LUAD 120918291 + 120918271 120918311 41 CAGCTGTGGAATAACCTGTGCAGGAGATGAAAAAGAAATTG CAGCTGTGGAATAACCTGTGCATGAGATGAAAAAGAAATTG < 41bp 0.752029757839243 0.423737064017867 0.51480836 0.14253 prediction 0.504059515678486 Functional Loss - TBCEL ENSG00000154114 CDS Human protein_coding chr11:120918291 chr11:120918293 stopgain 0.998 1 23 hm5C_associated_SNPs_64617 0 0 1 0 2 TBCEL chr11:120918237 3'AG 120918237 Downstream 57bp
chr11 120918293 120918293 1 + G T LUAD 120918291 + 120918271 120918311 41 CAGCTGTGGAATAACCTGTGCAGGAGATGAAAAAGAAATTG CAGCTGTGGAATAACCTGTGCATGAGATGAAAAAGAAATTG < 41bp 0.752029757839243 0.423737064017867 0.51480836 0.14253 prediction 0.504059515678486 Functional Loss - TBCEL ENSG00000154114 CDS Human protein_coding chr11:120918291 chr11:120918293 stopgain 0.998 1 23 hm5C_associated_SNPs_64617 0 0 1 0 2 TBCEL chr11:120918376 5'GT 120918376 Upstream 84bp
chr17 72943475 72943475 1 + G A SKCM 72943472 + 72943452 72943492 41 AGCTGGGCCAGGGCCTGCAGCGGGCCTCACTGGCCTACATC AGCTGGGCCAGGGCCTGCAGCGGACCTCACTGGCCTACATC < 41bp 0.754423594639395 0.502395135769152 0.8940592 0.8402619 prediction 0.504056917740486 Functional Loss - OTOP3 ENSG00000182938 CDS Human protein_coding chr17:72943472 chr17:72943475 nonsynonymous SNV 0.580 2 24 hm5C_associated_SNPs_64618 0 0 0 0 1 OTOP3 chr17:72943570 5'GT 72943570 Upstream 96bp
chr17 72443085 72443085 1 + C T rs200804586 72443083 + 72443063 72443103 41 CTGCGGGCTGAAGACATGTACTCGGCCCAGAGCCACCAGGC CTGCGGGCTGAAGACATGTACTTGGCCCAGAGCCACCAGGC < 41bp 0.775831226712405 0.523809463785448 0.4484023 0.26737136 prediction 0.504043525853915 Functional Loss - GPRC5C ENSG00000170412 CDS Human protein_coding chr17:72443083 chr17:72443085 nonsynonymous SNV 0.976 0 23 hm5C_associated_SNPs_64619 0 0 1 0 2 GPRC5C chr17:72442988 3'AG 72442988 Downstream 98bp
chr17 72443085 72443085 1 + C T rs200804586 72443083 + 72443063 72443103 41 CTGCGGGCTGAAGACATGTACTCGGCCCAGAGCCACCAGGC CTGCGGGCTGAAGACATGTACTTGGCCCAGAGCCACCAGGC < 41bp 0.775831226712405 0.523809463785448 0.4484023 0.26737136 prediction 0.504043525853915 Functional Loss - GPRC5C ENSG00000170412 CDS Human protein_coding chr17:72443083 chr17:72443085 nonsynonymous SNV 0.976 0 23 hm5C_associated_SNPs_64619 0 0 1 0 2 GPRC5C chr17:72443137 5'GT 72443137 Upstream 53bp
chr19 56171896 56171896 1 + A C MESO 56171892 + 56171872 56171912 41 CCTCCCCCAGTCGTTCCCCCCGCCACGAGAAGAAGAAGAAG CCTCCCCCAGTCGTTCCCCCCGCCCCGAGAAGAAGAAGAAG < 41bp 0.752005313531111 0.328081861700456 0.3875264 0.2232717 prediction 0.504010627062222 Functional Loss - U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56171892 chr19:56171896 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_64623 0 0 1 0 2 U2AF2 chr19:56171882 3'AG 56171882 Downstream 15bp
chr19 56171896 56171896 1 + A C MESO 56171892 + 56171872 56171912 41 CCTCCCCCAGTCGTTCCCCCCGCCACGAGAAGAAGAAGAAG CCTCCCCCAGTCGTTCCCCCCGCCCCGAGAAGAAGAAGAAG < 41bp 0.752005313531111 0.328081861700456 0.3875264 0.2232717 prediction 0.504010627062222 Functional Loss - U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56171892 chr19:56171896 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_64623 0 0 1 0 2 U2AF2 chr19:56171985 5'GT 56171985 Upstream 90bp
chr1 86952306 86952306 1 + G T UCEC 86952304 + 86952284 86952324 41 GTTGGGATGGTGACATTTGACAGTGCTGCCCATGTACAAAA GTTGGGATGGTGACATTTGACATTGCTGCCCATGTACAAAA < 41bp 0.752003944764959 0.418224248522261 0.24631602 0.1765436 prediction 0.504007889529918 Functional Loss - CLCA1 ENSG00000016490 CDS Human protein_coding chr1:86952304 chr1:86952306 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_64624 0 0 0 0 1 CLCA1 chr1:86952209 3'AG 86952209 Downstream 98bp
chr1 157895794 157895794 1 + G T SARC 157895791 + 157895771 157895811 41 TCCTGTGAGGCCGACAATGGCTGGGGATCCCAGCGCAGTGA TCCTGTGAGGCCGACAATGGCTGTGGATCCCAGCGCAGTGA < 41bp 0.900688893453437 0.648685956087842 0.8900486 0.22294271 prediction 0.50400587473119 Functional Loss - LOC105371458 ENSG00000236957 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:157895791 chr1:157895794 . . 0 24 hm5C_associated_SNPs_64625 0 0 0 0 1 LOC105371458 chr1:157895834 5'GT 157895834 Upstream 41bp
chr20 43565290 43565290 1 + G T SARC 43565288 + 43565268 43565308 41 CACCATGCAGGTCCAGGAGCCGGCTGTGCACATCCCAGGAC CACCATGCAGGTCCAGGAGCCGTCTGTGCACATCCCAGGAC < 41bp 0.751992503749029 0.397450732512594 0.46183744 0.23418364 prediction 0.503985007498057 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43565288 chr20:43565290 nonsynonymous SNV 0.154 0 23 hm5C_associated_SNPs_64627 0 0 1 0 2 PABPC1L chr20:43565278 3'AG 43565278 Downstream 13bp
chr20 43565290 43565290 1 + G T SARC 43565288 + 43565268 43565308 41 CACCATGCAGGTCCAGGAGCCGGCTGTGCACATCCCAGGAC CACCATGCAGGTCCAGGAGCCGTCTGTGCACATCCCAGGAC < 41bp 0.751992503749029 0.397450732512594 0.46183744 0.23418364 prediction 0.503985007498057 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43565288 chr20:43565290 nonsynonymous SNV 0.154 0 23 hm5C_associated_SNPs_64627 0 0 1 0 2 PABPC1L chr20:43565371 5'GT 43565371 Upstream 82bp
chr14 65560472 65560472 1 - C A UCEC 65560474 - 65560454 65560494 41 CGTAGGGACCACATCAAAGACAGCTTTCACAGTTTGCGGGA CGTAGGGACCACATCAAAGACATCTTTCACAGTTTGCGGGA < 41bp 0.751982446614575 0.437827847830163 0.1649031 0.06474927 prediction 0.503964893229151 Functional Loss - MAX ENSG00000125952 CDS Human protein_coding chr14:65560474 chr14:65560472 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_64629 0 0 1 0 2 MAX chr14:65560426 5'GT 65560426 Upstream 47bp
chr14 65560472 65560472 1 - C A UCEC 65560474 - 65560454 65560494 41 CGTAGGGACCACATCAAAGACAGCTTTCACAGTTTGCGGGA CGTAGGGACCACATCAAAGACATCTTTCACAGTTTGCGGGA < 41bp 0.751982446614575 0.437827847830163 0.1649031 0.06474927 prediction 0.503964893229151 Functional Loss - MAX ENSG00000125952 CDS Human protein_coding chr14:65560474 chr14:65560472 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_64629 0 0 1 0 2 MAX chr14:65560533 3'AG 65560533 Downstream 62bp
chr19 41826375 41826375 1 + G T LUSC 41826373 + 41826353 41826393 41 AAGGACGGGGACTTTGACTACAGGTGCTCCTGTGCCTCCAC AAGGACGGGGACTTTGACTACATGTGCTCCTGTGCCTCCAC < 41bp 0.751945027762924 0.407322753855513 0.9463924 0.8036554 prediction 0.503890055525848 Functional Loss - CCDC97 ENSG00000142039 CDS Human protein_coding chr19:41826373 chr19:41826375 nonsynonymous SNV 0.979 3 23 hm5C_associated_SNPs_64635 0 0 0 0 1 CCDC97 chr19:41826375 5'GT 41826375 Upstream 1bp
chr15 79183876 79183876 1 + C T LUAD 79183874 + 79183854 79183894 41 CAGTGAGACCCCTCAGCCTCCTCGGAAGAAAAGGGCCCGGG CAGTGAGACCCCTCAGCCTCCTTGGAAGAAAAGGGCCCGGG < 41bp 0.815852621729291 0.56391349639589 0.120818496 0.105529964 prediction 0.503878250666801 Functional Loss - MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79183874 chr15:79183876 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_64636 0 0 1 0 2 MORF4L1 chr15:79183826 3'AG 79183826 Downstream 51bp
chr15 79183876 79183876 1 + C T LUAD 79183874 + 79183854 79183894 41 CAGTGAGACCCCTCAGCCTCCTCGGAAGAAAAGGGCCCGGG CAGTGAGACCCCTCAGCCTCCTTGGAAGAAAAGGGCCCGGG < 41bp 0.815852621729291 0.56391349639589 0.120818496 0.105529964 prediction 0.503878250666801 Functional Loss - MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79183874 chr15:79183876 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_64636 0 0 1 0 2 MORF4L1 chr15:79183914 5'GT 79183914 Upstream 39bp
chr1 151015554 151015554 1 + C T STAD 151015552 + 151015532 151015572 41 GAGGGTGTTCCGAATGGGACCACGGGAGCAGCGCGTAGACA GAGGGTGTTCCGAATGGGACCATGGGAGCAGCGCGTAGACA < 41bp 0.776948132326235 0.525020162162135 0.31470466 0.39655784 prediction 0.503855940328201 Functional Loss - BNIPL ENSG00000163141 CDS Human protein_coding chr1:151015552 chr1:151015554 nonsynonymous SNV 0.518 1 23 hm5C_associated_SNPs_64638 0 0 0 0 1 BNIPL chr1:151015614 5'GT 151015614 Upstream 61bp
chr1 26514789 26514789 1 + C T UCEC 26514787 + 26514767 26514807 41 TCCAGGCCGGGCCCCCCCACCCCGAGAGGAAGGTAGGTGTC TCCAGGCCGGGCCCCCCCACCCTGAGAGGAAGGTAGGTGTC < 41bp 0.795821762628095 0.543906512953896 0.55780035 0.572614 prediction 0.503830499348398 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26514787 chr1:26514789 stopgain 0.421 0 23 hm5C_associated_SNPs_64642 0 0 1 0 2 CNKSR1 chr1:26514725 3'AG 26514725 Downstream 65bp
chr1 26514789 26514789 1 + C T UCEC 26514787 + 26514767 26514807 41 TCCAGGCCGGGCCCCCCCACCCCGAGAGGAAGGTAGGTGTC TCCAGGCCGGGCCCCCCCACCCTGAGAGGAAGGTAGGTGTC < 41bp 0.795821762628095 0.543906512953896 0.55780035 0.572614 prediction 0.503830499348398 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26514787 chr1:26514789 stopgain 0.421 0 23 hm5C_associated_SNPs_64642 0 0 1 0 2 CNKSR1 chr1:26514798 5'GT 26514798 Upstream 10bp
chr6 29895958 29895958 1 - C A rs9259841 29895961 - 29895941 29895981 41 GGTCTCTAGAAGCTCCATGTCCCGAGTCTGGTCCTCTCCAT GGTCTCTAGAAGCTCCATGTCCCTAGTCTGGTCCTCTCCAT < 41bp 0.751913436130817 0.395121955431569 0.23337147 0.14242363 prediction 0.503826872261633 Functional Loss - HCG4B ENSG00000230795 ncRNA_exonic Human unprocessed_pseudogene chr6:29895961 chr6:29895958 . . 0 24 hm5C_associated_SNPs_64643 0 0 0 0 1 HCG4B;HLA-A chr6:29896033 3'AG 29896033 Downstream 76bp
chr6 345905 345905 1 + C T ESCA 345903 + 345883 345923 41 TCATTCACGAGTGCCGGCTCCGCGGTGAGAGCTGCCTTGTA TCATTCACGAGTGCCGGCTCCGTGGTGAGAGCTGCCTTGTA < 41bp 0.751910412282281 0.482335558747319 0.3498947 0.60562956 prediction 0.503820824564562 Functional Loss - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:345903 chr6:345905 synonymous SNV . 0 23 hm5C_associated_SNPs_64644 0 0 1 0 2 DUSP22 chr6:345854 3'AG 345854 Downstream 52bp
chr6 345905 345905 1 + C T ESCA 345903 + 345883 345923 41 TCATTCACGAGTGCCGGCTCCGCGGTGAGAGCTGCCTTGTA TCATTCACGAGTGCCGGCTCCGTGGTGAGAGCTGCCTTGTA < 41bp 0.751910412282281 0.482335558747319 0.3498947 0.60562956 prediction 0.503820824564562 Functional Loss - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:345903 chr6:345905 synonymous SNV . 0 23 hm5C_associated_SNPs_64644 0 0 1 0 2 DUSP22 chr6:345928 5'GT 345928 Upstream 24bp
chr17 26821521 26821521 1 + G T COAD 26821518 + 26821498 26821538 41 GGTGGTGGCTATGCCCTGGCCAAGGGCAGTGAGGTGAGAGG GGTGGTGGCTATGCCCTGGCCAATGGCAGTGAGGTGAGAGG < 41bp 0.751908462848707 0.346364456257641 0.62318903 0.31247565 prediction 0.503816925697413 Functional Loss - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26821518 chr17:26821521 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_64645 0 0 0 0 1 SLC13A2 chr17:26821530 5'GT 26821530 Upstream 10bp
chr6 135518126 135518126 1 + A T LUSC 135518122 + 135518102 135518142 41 TCTTCATCATGGTGTGATCTCAGCAGTTTTGAATTCTTTGA TCTTCATCATGGTGTGATCTCAGCTGTTTTGAATTCTTTGA < 41bp 0.763129013287996 0.511220868953815 0.35637164 0.3140592 prediction 0.503816288668361 Functional Loss - MYB ENSG00000118513 CDS Human protein_coding chr6:135518122 chr6:135518126 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_64646 0 0 0 1 1 MYB chr6:135518099 3'AG 135518099 Downstream 28bp
chrX 118109468 118109468 1 + G C OV 118109467 + 118109447 118109487 41 AGTTGTTTCCAGGCCCAGCGCGAGCGTCGCAACTCCGGCAC AGTTGTTTCCAGGCCCAGCGCCAGCGTCGCAACTCCGGCAC < 41bp 0.848665157251568 0.596757158974957 0.8150895 0.51167786 prediction 0.503815996553223 Functional Loss - LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118109467 chrX:118109468 nonsynonymous SNV 0.875 4 22 hm5C_associated_SNPs_64647 0 0 0 0 1 LONRF3 chrX:118109560 5'GT 118109560 Upstream 93bp
chr2 183943837 183943837 1 + A C UCEC 183943833 + 183943813 183943853 41 GGGGTGGTTGTGGTTATGTGCAGGACCTTAGCTCGGACCTG GGGGTGGTTGTGGTTATGTGCAGGCCCTTAGCTCGGACCTG < 41bp 0.907618759943493 0.655713316607912 0.883864 0.87402487 prediction 0.503810886671164 Functional Loss - DUSP19 ENSG00000162999 CDS Human protein_coding chr2:183943833 chr2:183943837 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_64648 0 0 1 0 1 DUSP19 chr2:183943887 5'GT 183943887 Upstream 51bp
chr2 47606971 47606971 1 + G T UCEC 47606968 + 47606948 47606988 41 TGACAGTAAATGGGGAACAACTGGATCTGGATCCTGGTCAA TGACAGTAAATGGGGAACAACTGTATCTGGATCCTGGTCAA < 41bp 0.909417757846089 0.657514591040858 0.7854998 0.1257045 prediction 0.503806333610462 Functional Loss - EPCAM ENSG00000119888 CDS Human protein_coding chr2:47606968 chr2:47606971 nonsynonymous SNV 0.947 2 24 hm5C_associated_SNPs_64649 0 0 1 0 1 EPCAM chr2:47606908 3'AG 47606908 Downstream 64bp
chr11 65827302 65827302 1 + A T STAD 65827298 + 65827278 65827318 41 AGATGCACGATGTGACAGCGCAGGACCCTAAGCTCTTGGTT AGATGCACGATGTGACAGCGCAGGTCCCTAAGCTCTTGGTT < 41bp 0.861072416850408 0.609175551768264 0.72179186 0.45671743 prediction 0.503793730164288 Functional Loss - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827298 chr11:65827302 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_64652 0 0 1 0 1 SF3B2 chr11:65827253 3'AG 65827253 Downstream 50bp
chr20 2637071 2637071 1 + T C rs8958 2637070 + 2637050 2637090 41 CCTGAAGACAAGGGGTAACACTCCAAAATATGGACTCATTT CCTGAAGACAAGGGGTAACACCCCAAAATATGGACTCATTT < 41bp 0.751889459589601 0.489989876594169 0.97541124 0.054619998 prediction 0.503778919179203 Functional Loss - NOP56 ENSG00000101361 CDS Human protein_coding chr20:2637070 chr20:2637071 synonymous SNV . 0 22 hm5C_associated_SNPs_64653 1 0 1 1 1 NOP56 chr20:2637047 3'AG 2637047 Downstream 25bp
chr2 73475003 73475003 1 + C T UCEC 73475001 + 73474981 73475021 41 TTGCCCTTTTGAATGTCGAGCTCGAGTTGAAAGCTGAGAAA TTGCCCTTTTGAATGTCGAGCTTGAGTTGAAAGCTGAGAAA < 41bp 0.817207970389121 0.565324555328119 0.1071915 0.07436177 prediction 0.503766830122005 Functional Loss - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73475001 chr2:73475003 synonymous SNV . 0 23 hm5C_associated_SNPs_64654 0 0 1 0 1 CCT7 chr2:73475054 5'GT 73475054 Upstream 52bp
chr6 155532416 155532416 1 + G T LGG 155532414 + 155532394 155532434 41 ACTCTGGATCAGGTTTCCCACAGGGAGAAAATGGAGCAGAC ACTCTGGATCAGGTTTCCCACATGGAGAAAATGGAGCAGAC < 41bp 0.751881296198582 0.415142236265422 0.91217214 0.549213 prediction 0.503762592397165 Functional Loss - TIAM2 ENSG00000146426 CDS Human protein_coding chr6:155532414 chr6:155532416 nonsynonymous SNV 0.044 0 23 hm5C_associated_SNPs_64657 0 0 0 0 1 TIAM2 chr6:155532338 3'AG 155532338 Downstream 79bp
chr10 95399875 95399875 1 + T C STAD 95399874 + 95399854 95399894 41 GCAGAACTGTACGAATTCCGCTTCAGTGACTTCCCCCTTAC GCAGAACTGTACGAATTCCGCCTCAGTGACTTCCCCCTTAC < 41bp 0.766427534858871 0.514552408511027 0.151369 0.11873177 prediction 0.503750252695687 Functional Loss - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95399874 chr10:95399875 nonsynonymous SNV 0.984 4 22 hm5C_associated_SNPs_64658 0 0 0 0 2 PDE6C chr10:95399827 3'AG 95399827 Downstream 49bp
chr10 95399875 95399875 1 + T C STAD 95399874 + 95399854 95399894 41 GCAGAACTGTACGAATTCCGCTTCAGTGACTTCCCCCTTAC GCAGAACTGTACGAATTCCGCCTCAGTGACTTCCCCCTTAC < 41bp 0.766427534858871 0.514552408511027 0.151369 0.11873177 prediction 0.503750252695687 Functional Loss - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95399874 chr10:95399875 nonsynonymous SNV 0.984 4 22 hm5C_associated_SNPs_64658 0 0 0 0 2 PDE6C chr10:95399973 5'GT 95399973 Upstream 99bp
chr7 140394547 140394547 1 + G T UCEC 140394544 + 140394524 140394564 41 GCCGCTCACTGGACCCCAAACTGGACATCCTGGAGGCAGCG GCCGCTCACTGGACCCCAAACTGTACATCCTGGAGGCAGCG < 41bp 0.910417337940354 0.658542465951756 0.2662983 0.3127916 prediction 0.503749743977197 Functional Loss - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140394544 chr7:140394547 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_64659 0 0 0 0 1 ADCK2 chr7:140394463 3'AG 140394463 Downstream 85bp
chr1 9780224 9780224 1 + C T rs368722127 9780222 + 9780202 9780242 41 ACTGTGCGCAGTAACCCCAACACGGATAGCGCCGCTGCCCT ACTGTGCGCAGTAACCCCAACATGGATAGCGCCGCTGCCCT < 41bp 0.768259070584986 0.5163851908481 0.38432407 0.5105321 prediction 0.503747759473772 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9780222 chr1:9780224 nonsynonymous SNV 0.431 1 23 hm5C_associated_SNPs_64661 0 0 1 0 2 PIK3CD chr1:9780170 3'AG 9780170 Downstream 55bp
chr1 9780224 9780224 1 + C T rs368722127 9780222 + 9780202 9780242 41 ACTGTGCGCAGTAACCCCAACACGGATAGCGCCGCTGCCCT ACTGTGCGCAGTAACCCCAACATGGATAGCGCCGCTGCCCT < 41bp 0.768259070584986 0.5163851908481 0.38432407 0.5105321 prediction 0.503747759473772 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9780222 chr1:9780224 nonsynonymous SNV 0.431 1 23 hm5C_associated_SNPs_64661 0 0 1 0 2 PIK3CD chr1:9780300 5'GT 9780300 Upstream 77bp
chr10 12199989 12199989 1 + C T BLCA 12199987 + 12199967 12200007 41 CCCATCAAACTCTTCTACACCTCCAACATCCCCATCATCCT CCCATCAAACTCTTCTACACCTTCAACATCCCCATCATCCT < 41bp 0.751871100495758 0.44836118284436 0.94866174 0.007327169 prediction 0.503742200991515 Functional Loss - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12199987 chr10:12199989 nonsynonymous SNV 0.984 4 23 hm5C_associated_SNPs_64664 0 0 1 0 1 SEC61A2 chr10:12199907 3'AG 12199907 Downstream 83bp
chr13 114290368 114290368 1 + C T UCEC 114290366 + 114290346 114290386 41 AGCCGGCCACCGCCACCCAACTCAGTCATCCACCTGCCCTT AGCCGGCCACCGCCACCCAACTTAGTCATCCACCTGCCCTT < 41bp 0.751864975818664 0.473233132912291 0.06854501 0.016508728 prediction 0.503729951637328 Functional Loss - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114290366 chr13:114290368 nonsynonymous SNV 0.952 2 23 hm5C_associated_SNPs_64665 0 0 1 0 2 TFDP1 chr13:114290292 3'AG 114290292 Downstream 77bp
chr13 114290368 114290368 1 + C T UCEC 114290366 + 114290346 114290386 41 AGCCGGCCACCGCCACCCAACTCAGTCATCCACCTGCCCTT AGCCGGCCACCGCCACCCAACTTAGTCATCCACCTGCCCTT < 41bp 0.751864975818664 0.473233132912291 0.06854501 0.016508728 prediction 0.503729951637328 Functional Loss - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114290366 chr13:114290368 nonsynonymous SNV 0.952 2 23 hm5C_associated_SNPs_64665 0 0 1 0 2 TFDP1 chr13:114290443 5'GT 114290443 Upstream 76bp
chr11 66249733 66249733 1 + A T LUAD 66249729 + 66249709 66249749 41 GCGTGTCTAGCCTGGACTGCCGTGAGGCCTTCCGCCTGCTG GCGTGTCTAGCCTGGACTGCCGTGTGGCCTTCCGCCTGCTG < 41bp 0.751845536286955 0.437766729417692 0.6573081 0.6145347 prediction 0.50369107257391 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66249729 chr11:66249733 nonsynonymous SNV 0.985 1 25 hm5C_associated_SNPs_64670 0 0 1 0 2 DPP3 chr11:66249664 3'AG 66249664 Downstream 70bp
chr11 66249733 66249733 1 + A T LUAD 66249729 + 66249709 66249749 41 GCGTGTCTAGCCTGGACTGCCGTGAGGCCTTCCGCCTGCTG GCGTGTCTAGCCTGGACTGCCGTGTGGCCTTCCGCCTGCTG < 41bp 0.751845536286955 0.437766729417692 0.6573081 0.6145347 prediction 0.50369107257391 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66249729 chr11:66249733 nonsynonymous SNV 0.985 1 25 hm5C_associated_SNPs_64670 0 0 1 0 2 DPP3 chr11:66249667 3'AG 66249667 Downstream 67bp
chr11 57509396 57509396 1 + G C HNSC 57509395 + 57509375 57509415 41 AAGCCCCGGAGGGGCAGCTTCGAGGTGACGCTGCTGCGCCC AAGCCCCGGAGGGGCAGCTTCCAGGTGACGCTGCTGCGCCC < 41bp 0.862449102398605 0.610603967737296 0.9262252 0.9094491 prediction 0.503690269322619 Functional Loss - SELENOH ENSG00000211450 CDS Human protein_coding chr11:57509395 chr11:57509396 unknown 1.000 4 22 hm5C_associated_SNPs_64671 0 0 1 0 1 SELENOH chr11:57509426 5'GT 57509426 Upstream 31bp
chr5 161128593 161128593 1 + G T UCS 161128590 + 161128570 161128610 41 TCCGAGGCCAATAAAGTGCTCACGAGAGCGCCCATCTTACA TCCGAGGCCAATAAAGTGCTCACTAGAGCGCCCATCTTACA < 41bp 0.908156962279747 0.656312175581537 0.25400198 0.0689252 prediction 0.50368957339642 Functional Loss - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161128590 chr5:161128593 synonymous SNV . 0 24 hm5C_associated_SNPs_64672 0 0 0 0 1 GABRA6 chr5:161128504 3'AG 161128504 Downstream 90bp
chr10 116037803 116037803 1 + C T SKCM 116037801 + 116037781 116037821 41 GGCCATCTGCTCCAGCGCCACGCCAGGTAAGATCTTCCAGC GGCCATCTGCTCCAGCGCCACGTCAGGTAAGATCTTCCAGC < 41bp 0.75182937700696 0.484906300697793 0.24319631 0.19495541 prediction 0.503658754013919 Functional Loss - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116037801 chr10:116037803 nonsynonymous SNV 0.174 0 23 hm5C_associated_SNPs_64676 0 0 0 0 1 VWA2 chr10:116037806 5'GT 116037806 Upstream 4bp
chr11 75438556 75438556 1 + G T LUAD 75438554 + 75438534 75438574 41 CCCCATGGAGTCCTGGCAGTCGGAGCCTTTGCCAACCTGTG CCCCATGGAGTCCTGGCAGTCGTAGCCTTTGCCAACCTGTG < 41bp 0.75182726847079 0.37985316641392 0.93716013 0.22306576 prediction 0.503654536941579 Functional Loss - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75438554 chr11:75438556 nonsynonymous SNV 0.571 4 23 hm5C_associated_SNPs_64677 0 0 1 0 1 MOGAT2 chr11:75438480 3'AG 75438480 Downstream 77bp
chr7 50467675 50467675 1 + G C BLCA 50467674 + 50467654 50467694 41 GCCAGCTACGAGAAGGAGAACGAAATGATGAAGTCCCACGT GCCAGCTACGAGAAGGAGAACCAAATGATGAAGTCCCACGT < 41bp 0.807735676146987 0.555910011959639 0.8400825 0.8869554 prediction 0.503651328374696 Functional Loss - IKZF1 ENSG00000185811 CDS Human protein_coding chr7:50467674 chr7:50467675 nonsynonymous SNV 0.944 2 22 hm5C_associated_SNPs_64678 0 0 0 0 1 IKZF1 chr7:50467616 3'AG 50467616 Downstream 60bp
chr17 7289947 7289947 1 + G T GBM 7289944 + 7289924 7289964 41 AGGCGCCCTGAGGATGGAGACTGGTGACCCCATCACAGTCA AGGCGCCCTGAGGATGGAGACTGTTGACCCCATCACAGTCA < 41bp 0.751819368196233 0.354463549639679 0.29854286 0.11100945 prediction 0.503638736392467 Functional Loss - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7289944 chr17:7289947 nonsynonymous SNV 0.739 1 24 hm5C_associated_SNPs_64679 0 0 0 0 2 TNK1 chr17:7289880 3'AG 7289880 Downstream 68bp
chr17 7289947 7289947 1 + G T GBM 7289944 + 7289924 7289964 41 AGGCGCCCTGAGGATGGAGACTGGTGACCCCATCACAGTCA AGGCGCCCTGAGGATGGAGACTGTTGACCCCATCACAGTCA < 41bp 0.751819368196233 0.354463549639679 0.29854286 0.11100945 prediction 0.503638736392467 Functional Loss - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7289944 chr17:7289947 nonsynonymous SNV 0.739 1 24 hm5C_associated_SNPs_64679 0 0 0 0 2 TNK1 chr17:7289974 5'GT 7289974 Upstream 28bp
chr9 34996295 34996295 1 + C T STAD 34996293 + 34996273 34996313 41 GGCGGTGGCACATCAGGTGGCTCCAGTGGCTCCTTTCACTA GGCGGTGGCACATCAGGTGGCTTCAGTGGCTCCTTTCACTA < 41bp 0.836746036887106 0.584927359496503 0.87149 0.30435196 prediction 0.503637354781207 Functional Loss - DNAJB5 ENSG00000137094 CDS Human protein_coding chr9:34996293 chr9:34996295 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_64680 0 0 0 0 1 DNAJB5 chr9:34996262 3'AG 34996262 Downstream 34bp
chr1 77093220 77093220 1 + G T LUSC 77093218 + 77093198 77093238 41 TGTTATGGCATTCACGTCTACGGGATGATAAATGACACCTA TGTTATGGCATTCACGTCTACGTGATGATAAATGACACCTA < 41bp 0.751812813066428 0.458277117281243 0.7580837 0.1973519 prediction 0.503625626132856 Functional Loss - ST6GALNAC3 ENSG00000184005 CDS Human protein_coding chr1:77093218 chr1:77093220 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_64681 0 0 0 0 1 ST6GALNAC3 chr1:77093244 5'GT 77093244 Upstream 25bp
chr4 123663115 123663115 1 + C T UCEC 123663113 + 123663093 123663133 41 CTTCAACAACTTTCATCATTCGCGGAAACAGGAAGAACTTT CTTCAACAACTTTCATCATTCGTGGAAACAGGAAGAACTTT < 41bp 0.752957632260316 0.501152266937974 0.41690063 0.41860038 prediction 0.503610730644685 Functional Loss - BBS12 ENSG00000181004 CDS Human protein_coding chr4:123663113 chr4:123663115 nonsynonymous SNV 0.991 5 23 hm5C_associated_SNPs_64684 0 0 0 0 1 BBS12 chr4:123663038 3'AG 123663038 Downstream 78bp
chr19 12921170 12921170 1 + G C KIRC 12921166 + 12921146 12921186 41 GCCGTGAAGAAATGGCAGTTCGTGGAGAAACTGCAGGACTT GCCGTGAAGAAATGGCAGTTCGTGCAGAAACTGCAGGACTT < 41bp 0.751800406416949 0.469362780541489 0.8207596 0.32783645 prediction 0.503600812833898 Functional Loss - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12921166 chr19:12921170 nonsynonymous SNV 0.730 5 25 hm5C_associated_SNPs_64686 0 0 1 0 2 RNASEH2A chr19:12921131 3'AG 12921131 Downstream 40bp
chr19 12921170 12921170 1 + G C KIRC 12921166 + 12921146 12921186 41 GCCGTGAAGAAATGGCAGTTCGTGGAGAAACTGCAGGACTT GCCGTGAAGAAATGGCAGTTCGTGCAGAAACTGCAGGACTT < 41bp 0.751800406416949 0.469362780541489 0.8207596 0.32783645 prediction 0.503600812833898 Functional Loss - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12921166 chr19:12921170 nonsynonymous SNV 0.730 5 25 hm5C_associated_SNPs_64686 0 0 1 0 2 RNASEH2A chr19:12921218 5'GT 12921218 Upstream 49bp
chr19 52085096 52085096 1 + C T UCEC 52085094 + 52085074 52085114 41 AATGCTAAAAGAAAAGGAGCCGCGTGTGGAGGAGGCTGAAG AATGCTAAAAGAAAAGGAGCCGTGTGTGGAGGAGGCTGAAG < 41bp 0.753678802371354 0.501879320388581 0.2527575 0.23382023 prediction 0.503598963965547 Functional Loss - ZNF175 ENSG00000105497 CDS Human protein_coding chr19:52085094 chr19:52085096 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_64687 0 0 1 0 1 ZNF175 chr19:52085135 5'GT 52085135 Upstream 40bp
chr2 178083870 178083870 1 + C T UCEC 178083868 + 178083848 178083888 41 GGCAGTTTTGGTGGAAGAAGCTCGGGCAGTCCCTATGGTGG GGCAGTTTTGGTGGAAGAAGCTTGGGCAGTCCCTATGGTGG < 41bp 0.751788976233562 0.482793431856944 0.38173747 0.33562714 prediction 0.503577952467124 Functional Loss - HNRNPA3 ENSG00000170144 CDS Human protein_coding chr2:178083868 chr2:178083870 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_64689 0 0 1 0 1 HNRNPA3 chr2:178083887 5'GT 178083887 Upstream 18bp
chr9 139700564 139700564 1 + C T CESC 139700562 + 139700542 139700582 41 CGCTTCCTGGCCCAGAGGAACACGGAGGAGAACCTGGAGCT CGCTTCCTGGCCCAGAGGAACATGGAGGAGAACCTGGAGCT < 41bp 0.768642069096948 0.516857313387779 0.7021871 0.48806444 prediction 0.503569511418339 Functional Loss - CCDC183 ENSG00000213213 CDS Human protein_coding chr9:139700562 chr9:139700564 nonsynonymous SNV 0.562 3 23 hm5C_associated_SNPs_64690 0 0 1 0 1 CCDC183 chr9:139700530 3'AG 139700530 Downstream 35bp
chr5 159463735 159463735 1 + C T COAD 159463733 + 159463713 159463753 41 AAAGTTCTTATAGTCGAGCCCTCGAAATGTGCCCATCCTGC AAAGTTCTTATAGTCGAGCCCTTGAAATGTGCCCATCCTGC < 41bp 0.751773595573943 0.458467863554367 0.310265 0.026696324 prediction 0.503547191147885 Functional Loss - TTC1 ENSG00000113312 CDS Human protein_coding chr5:159463733 chr5:159463735 synonymous SNV . 0 23 hm5C_associated_SNPs_64692 0 0 1 0 2 TTC1 chr5:159463698 3'AG 159463698 Downstream 38bp
chr5 159463735 159463735 1 + C T COAD 159463733 + 159463713 159463753 41 AAAGTTCTTATAGTCGAGCCCTCGAAATGTGCCCATCCTGC AAAGTTCTTATAGTCGAGCCCTTGAAATGTGCCCATCCTGC < 41bp 0.751773595573943 0.458467863554367 0.310265 0.026696324 prediction 0.503547191147885 Functional Loss - TTC1 ENSG00000113312 CDS Human protein_coding chr5:159463733 chr5:159463735 synonymous SNV . 0 23 hm5C_associated_SNPs_64692 0 0 1 0 2 TTC1 chr5:159463810 5'GT 159463810 Upstream 76bp
chr11 125474114 125474114 1 + A T LIHC 125474110 + 125474090 125474130 41 TGTAGTTCCTGGATATATCTCCCGATCTGTGGCTGGCTCCT TGTAGTTCCTGGATATATCTCCCGTTCTGTGGCTGGCTCCT < 41bp 0.751772974121061 0.414482970342781 0.26323706 0.30021495 prediction 0.503545948242121 Functional Loss - STT3A ENSG00000134910 CDS Human protein_coding chr11:125474110 chr11:125474114 synonymous SNV . 0 25 hm5C_associated_SNPs_64693 0 0 1 0 2 STT3A chr11:125474052 3'AG 125474052 Downstream 63bp
chr11 125474114 125474114 1 + A T LIHC 125474110 + 125474090 125474130 41 TGTAGTTCCTGGATATATCTCCCGATCTGTGGCTGGCTCCT TGTAGTTCCTGGATATATCTCCCGTTCTGTGGCTGGCTCCT < 41bp 0.751772974121061 0.414482970342781 0.26323706 0.30021495 prediction 0.503545948242121 Functional Loss - STT3A ENSG00000134910 CDS Human protein_coding chr11:125474110 chr11:125474114 synonymous SNV . 0 25 hm5C_associated_SNPs_64693 0 0 1 0 2 STT3A chr11:125474142 5'GT 125474142 Upstream 29bp
chr1 160318843 160318843 1 + T C STAD 160318842 + 160318822 160318862 41 TAGTAGAGAAAGAGGAGGACCTACAGTGGGTATTGACTGAT TAGTAGAGAAAGAGGAGGACCCACAGTGGGTATTGACTGAT < 41bp 0.767286872302888 0.515521528614778 0.90492415 0.10148391 prediction 0.503530687376219 Functional Loss - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160318842 chr1:160318843 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_64696 0 0 1 0 2 NCSTN chr1:160318789 3'AG 160318789 Downstream 55bp
chr1 160318843 160318843 1 + T C STAD 160318842 + 160318822 160318862 41 TAGTAGAGAAAGAGGAGGACCTACAGTGGGTATTGACTGAT TAGTAGAGAAAGAGGAGGACCCACAGTGGGTATTGACTGAT < 41bp 0.767286872302888 0.515521528614778 0.90492415 0.10148391 prediction 0.503530687376219 Functional Loss - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160318842 chr1:160318843 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_64696 0 0 1 0 2 NCSTN chr1:160318912 5'GT 160318912 Upstream 70bp
chr1 52878240 52878240 1 + G T LUAD 52878237 + 52878217 52878257 41 TGGAGCCTCGAGTTAGTGCTCTGGAAGAGGACATGGATGAT TGGAGCCTCGAGTTAGTGCTCTGTAAGAGGACATGGATGAT < 41bp 0.911163000587507 0.659433543891191 0.08501628 0.089248806 prediction 0.503458913392632 Functional Loss - PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52878237 chr1:52878240 stopgain 0.999 1 24 hm5C_associated_SNPs_64704 0 0 1 0 2 PRPF38A chr1:52878186 3'AG 52878186 Downstream 55bp
chr1 52878240 52878240 1 + G T LUAD 52878237 + 52878217 52878257 41 TGGAGCCTCGAGTTAGTGCTCTGGAAGAGGACATGGATGAT TGGAGCCTCGAGTTAGTGCTCTGTAAGAGGACATGGATGAT < 41bp 0.911163000587507 0.659433543891191 0.08501628 0.089248806 prediction 0.503458913392632 Functional Loss - PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52878237 chr1:52878240 stopgain 0.999 1 24 hm5C_associated_SNPs_64704 0 0 1 0 2 PRPF38A chr1:52878296 5'GT 52878296 Upstream 57bp
chr10 116049187 116049187 1 + C T ACC 116049185 + 116049165 116049205 41 GTCCCCGGGATTCCCTGATCCACGTGGCAGCTTACGCCGAC GTCCCCGGGATTCCCTGATCCATGTGGCAGCTTACGCCGAC < 41bp 0.751728550061043 0.487266372508712 0.88254845 0.7247104 prediction 0.503457100122085 Functional Loss - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116049185 chr10:116049187 synonymous SNV . 0 23 hm5C_associated_SNPs_64705 0 0 0 0 1 VWA2 chr10:116049248 5'GT 116049248 Upstream 62bp
chr5 10254914 10254914 1 + G T LUSC 10254911 + 10254891 10254931 41 TGGTGGAACTGTCCAAGTCTCAGGATGATGAAATTGGAGAT TGGTGGAACTGTCCAAGTCTCAGTATGATGAAATTGGAGAT < 41bp 0.900287718862119 0.648566546845685 0.87994266 0.25802842 prediction 0.503442344032868 Functional Loss - CCT5 ENSG00000150753 CDS Human protein_coding chr5:10254911 chr5:10254914 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_64706 0 0 1 0 1 CCT5 chr5:10254950 5'GT 10254950 Upstream 37bp
chr17 78195395 78195395 1 + G T HNSC 78195392 + 78195372 78195412 41 GTGACGGCGCTGGGTCAGGCCAGGTCCTCTGGCCCCGGGAT GTGACGGCGCTGGGTCAGGCCAGTTCCTCTGGCCCCGGGAT < 41bp 0.751715559430799 0.351158469971326 0.8741205 0.3393774 prediction 0.503431118861599 Functional Loss - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78195392 chr17:78195395 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_64707 0 0 0 0 1 SLC26A11 chr17:78195347 3'AG 78195347 Downstream 49bp
chr1 156552193 156552193 1 + C T COAD 156552191 + 156552171 156552211 41 CCTCGGCAACTATCAGGAAGCTCGGGAGTTTCACCAGAAGG CCTCGGCAACTATCAGGAAGCTTGGGAGTTTCACCAGAAGG < 41bp 0.770894636482104 0.519180651674584 0.31358248 0.21828446 prediction 0.50342796961504 Functional Loss - TTC24 ENSG00000187862 CDS Human protein_coding chr1:156552191 chr1:156552193 nonsynonymous SNV 0.409 3 23 hm5C_associated_SNPs_64708 0 0 0 0 1 TTC24 chr1:156552226 5'GT 156552226 Upstream 34bp
chr1 206317644 206317644 1 + G T UCEC 206317642 + 206317622 206317662 41 GAGGCCCAAGGATCCCTTCACAGGTGAGAAGACGTCCCCGC GAGGCCCAAGGATCCCTTCACATGTGAGAAGACGTCCCCGC < 41bp 0.892298264795865 0.64058741716658 0.9194963 0.87327796 prediction 0.50342169525857 Functional Loss - CTSE ENSG00000196188 CDS Human protein_coding chr1:206317642 chr1:206317644 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_64710 0 0 0 0 1 CTSE chr1:206317644 5'GT 206317644 Upstream 1bp
chr19 7529472 7529472 1 + A C COAD 7529471 + 7529451 7529491 41 AGTTTCAAGAAGAAAGTCAGCAGCACTGACCCCAGGCCCCG AGTTTCAAGAAGAAAGTCAGCCGCACTGACCCCAGGCCCCG < 41bp 0.756109423101313 0.50439949450935 0.3018159 0.11478582 prediction 0.503419857183926 Functional Loss - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7529471 chr19:7529472 nonsynonymous SNV 0.059 0 22 hm5C_associated_SNPs_64711 0 0 0 0 1 ARHGEF18 chr19:7529446 3'AG 7529446 Downstream 27bp
chr22 40364245 40364245 1 + A T HNSC 40364241 + 40364221 40364261 41 AGCAGCTGCAGCAGCCCCCACAGCAGCGATATCTGCAGCAC AGCAGCTGCAGCAGCCCCCACAGCTGCGATATCTGCAGCAC < 41bp 0.874788984086403 0.623080221685521 0.43296382 0.4781251 prediction 0.503417524801764 Functional Loss - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40364241 chr22:40364245 nonsynonymous SNV 0.629 0 25 hm5C_associated_SNPs_64712 0 0 1 0 1 GRAP2 chr22:40364276 5'GT 40364276 Upstream 32bp
chr5 176678794 176678794 1 + G T ESCA 176678791 + 176678771 176678811 41 AGTGCTGTGGGGCTTTCCACCTGGAGTGCCTTGGATTGACT AGTGCTGTGGGGCTTTCCACCTGTAGTGCCTTGGATTGACT < 41bp 0.751701898967539 0.385973956726159 0.7409323 0.15808386 prediction 0.503403797935078 Functional Loss - NSD1 ENSG00000165671 CDS Human protein_coding chr5:176678791 chr5:176678794 stopgain 1.000 1 24 hm5C_associated_SNPs_64713 0 0 1 0 2 NSD1 chr5:176678731 3'AG 176678731 Downstream 64bp
chr5 176678794 176678794 1 + G T ESCA 176678791 + 176678771 176678811 41 AGTGCTGTGGGGCTTTCCACCTGGAGTGCCTTGGATTGACT AGTGCTGTGGGGCTTTCCACCTGTAGTGCCTTGGATTGACT < 41bp 0.751701898967539 0.385973956726159 0.7409323 0.15808386 prediction 0.503403797935078 Functional Loss - NSD1 ENSG00000165671 CDS Human protein_coding chr5:176678791 chr5:176678794 stopgain 1.000 1 24 hm5C_associated_SNPs_64713 0 0 1 0 2 NSD1 chr5:176678854 5'GT 176678854 Upstream 61bp
chr19 48953993 48953993 1 + C T COAD 48953991 + 48953971 48954011 41 CTACGGACGGCGGCTCCTGGCACGTGGACCAGCGGCCATTC CTACGGACGGCGGCTCCTGGCATGTGGACCAGCGGCCATTC < 41bp 0.79283159413775 0.541137801333356 0.34273854 0.35266116 prediction 0.503387585608788 Functional Loss - GRWD1 ENSG00000105447 CDS Human protein_coding chr19:48953991 chr19:48953993 synonymous SNV . 0 23 hm5C_associated_SNPs_64717 0 0 1 0 2 GRWD1 chr19:48953923 3'AG 48953923 Downstream 71bp
chr19 48953993 48953993 1 + C T COAD 48953991 + 48953971 48954011 41 CTACGGACGGCGGCTCCTGGCACGTGGACCAGCGGCCATTC CTACGGACGGCGGCTCCTGGCATGTGGACCAGCGGCCATTC < 41bp 0.79283159413775 0.541137801333356 0.34273854 0.35266116 prediction 0.503387585608788 Functional Loss - GRWD1 ENSG00000105447 CDS Human protein_coding chr19:48953991 chr19:48953993 synonymous SNV . 0 23 hm5C_associated_SNPs_64717 0 0 1 0 2 GRWD1 chr19:48954065 5'GT 48954065 Upstream 73bp
chr14 64892864 64892864 1 + G T UCEC 64892861 + 64892841 64892881 41 CCAAAGTTCTGCTGTCAGCACTAGAACGCCTGAAGCACCGG CCAAAGTTCTGCTGTCAGCACTATAACGCCTGAAGCACCGG < 41bp 0.751692337535418 0.352630659198972 0.06126362 0.16552165 prediction 0.503384675070837 Functional Loss - MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64892861 chr14:64892864 stopgain 0.737 0 24 hm5C_associated_SNPs_64718 0 0 1 0 1 MTHFD1 chr14:64892910 5'GT 64892910 Upstream 47bp
chr5 156729888 156729888 1 + G T HNSC 156729886 + 156729866 156729906 41 ATGTTCCTGGCCAACCACAACAGGATCACCCAGGTGAGGGC ATGTTCCTGGCCAACCACAACATGATCACCCAGGTGAGGGC < 41bp 0.75167268320754 0.406473030790254 0.35203543 0.027689725 prediction 0.503345366415079 Functional Loss - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156729886 chr5:156729888 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_64722 0 0 1 0 2 CYFIP2 chr5:156729802 3'AG 156729802 Downstream 87bp
chr5 156729888 156729888 1 + G T HNSC 156729886 + 156729866 156729906 41 ATGTTCCTGGCCAACCACAACAGGATCACCCAGGTGAGGGC ATGTTCCTGGCCAACCACAACATGATCACCCAGGTGAGGGC < 41bp 0.75167268320754 0.406473030790254 0.35203543 0.027689725 prediction 0.503345366415079 Functional Loss - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156729886 chr5:156729888 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_64722 0 0 1 0 2 CYFIP2 chr5:156729898 5'GT 156729898 Upstream 11bp
chr9 135864465 135864465 1 + C T STAD 135864463 + 135864443 135864483 41 CCCAGGTCTTCTCCACCCCTCACGGGCTCGAAGTGCATGTG CCCAGGTCTTCTCCACCCCTCATGGGCTCGAAGTGCATGTG < 41bp 0.754549741299667 0.502880743632764 0.56741244 0.42601582 prediction 0.503337995333806 Functional Loss - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135864463 chr9:135864465 synonymous SNV . 0 23 hm5C_associated_SNPs_64723 0 0 0 0 1 GFI1B chr9:135864448 3'AG 135864448 Downstream 18bp
chr20 16730655 16730655 1 + G T UCEC 16730652 + 16730632 16730672 41 GCTACCAAGGAAGTTCCCACCACGGTAAGCATCTCAAAAGT GCTACCAAGGAAGTTCCCACCACTGTAAGCATCTCAAAAGT < 41bp 0.902184597167361 0.650516388871106 0.40646285 0.13469851 prediction 0.50333641659251 Functional Loss - OTOR ENSG00000125879 CDS Human protein_coding chr20:16730652 chr20:16730655 synonymous SNV . 0 24 hm5C_associated_SNPs_64724 0 0 0 0 1 OTOR chr20:16730655 5'GT 16730655 Upstream 1bp
chr11 63273900 63273900 1 + G C KIRP 63273899 + 63273879 63273919 41 TGGGGGCAGGGCTCCTGGAACGAGGATCTACAGTTGGAGTT TGGGGGCAGGGCTCCTGGAACCAGGATCTACAGTTGGAGTT < 41bp 0.846906677334648 0.595248375967477 0.8377454 0.48761362 prediction 0.503316602734343 Functional Loss - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63273899 chr11:63273900 synonymous SNV . 0 22 hm5C_associated_SNPs_64726 0 0 0 0 1 LGALS12 chr11:63273999 5'GT 63273999 Upstream 100bp
chr22 32257396 32257396 1 + G T SARC 32257394 + 32257374 32257414 41 GTTTGTCCGCAGCCCACGCACAGCATCGTCCGCCTTCTACC GTTTGTCCGCAGCCCACGCACATCATCGTCCGCCTTCTACC < 41bp 0.751656846813796 0.429924728749854 0.23826206 0.11097869 prediction 0.503313693627591 Functional Loss - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32257394 chr22:32257396 nonsynonymous SNV 0.965 0 23 hm5C_associated_SNPs_64727 0 0 0 1 2 DEPDC5 chr22:32257354 3'AG 32257354 Downstream 43bp
chr22 32257396 32257396 1 + G T SARC 32257394 + 32257374 32257414 41 GTTTGTCCGCAGCCCACGCACAGCATCGTCCGCCTTCTACC GTTTGTCCGCAGCCCACGCACATCATCGTCCGCCTTCTACC < 41bp 0.751656846813796 0.429924728749854 0.23826206 0.11097869 prediction 0.503313693627591 Functional Loss - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32257394 chr22:32257396 nonsynonymous SNV 0.965 0 23 hm5C_associated_SNPs_64727 0 0 0 1 2 DEPDC5 chr22:32257419 5'GT 32257419 Upstream 24bp
chr8 11222452 11222452 1 + G T CESC 11222450 + 11222430 11222470 41 AGGAGGTCCTCAAGCACGTGCCGGAATTCCAGATCACATAC AGGAGGTCCTCAAGCACGTGCCTGAATTCCAGATCACATAC < 41bp 0.75164955764619 0.407460765865542 0.6600279 0.3042754 prediction 0.503299115292379 Functional Loss - TDH ENSG00000154316 ncRNA_exonic Human transcribed_unitary_pseudogene chr8:11222450 chr8:11222452 . . 0 23 hm5C_associated_SNPs_64729 0 0 0 0 1 TDH chr8:11222498 5'GT 11222498 Upstream 47bp
chr15 25456783 25456783 1 + G T BLCA 25456781 + 25456761 25456801 41 GCCTGAAGGAAGACTTGCATCAGGACCAATGGACCCTGGCA GCCTGAAGGAAGACTTGCATCATGACCAATGGACCCTGGCA < 41bp 0.871179849816318 0.619533313999514 0.90218353 0.19685242 prediction 0.503293071633609 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25456781 chr15:25456783 . . 0 23 hm5C_associated_SNPs_64730 0 0 0 2 1 SNHG14 chr15:25456754 3'AG 25456754 Downstream 30bp
chr22 24919673 24919673 1 + G T LUAD 24919670 + 24919650 24919690 41 CTCCTGGGCTGTCCCGTAGCCGGGATGGACTGCTAGTTGCT CTCCTGGGCTGTCCCGTAGCCGGTATGGACTGCTAGTTGCT < 41bp 0.917441362952423 0.665799225370278 0.89308065 0.2160643 prediction 0.50328427516429 Functional Loss - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24919670 chr22:24919673 nonsynonymous SNV 0.112 5 24 hm5C_associated_SNPs_64731 0 0 1 0 2 UPB1 chr22:24919587 3'AG 24919587 Downstream 87bp
chr22 24919673 24919673 1 + G T LUAD 24919670 + 24919650 24919690 41 CTCCTGGGCTGTCCCGTAGCCGGGATGGACTGCTAGTTGCT CTCCTGGGCTGTCCCGTAGCCGGTATGGACTGCTAGTTGCT < 41bp 0.917441362952423 0.665799225370278 0.89308065 0.2160643 prediction 0.50328427516429 Functional Loss - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24919670 chr22:24919673 nonsynonymous SNV 0.112 5 24 hm5C_associated_SNPs_64731 0 0 1 0 2 UPB1 chr22:24919741 5'GT 24919741 Upstream 69bp
chr19 44470044 44470044 1 + A C rs151193849 44470043 + 44470023 44470063 41 GCAAATATGGGAACAAATTGCAAGTGACCTAACCAGGTCTC GCAAATATGGGAACAAATTGCCAGTGACCTAACCAGGTCTC < 41bp 0.760785720667331 0.509148548963229 0.41977137 0.29653898 prediction 0.503274343408204 Functional Loss - ZNF221 ENSG00000159905 CDS Human protein_coding chr19:44470043 chr19:44470044 synonymous SNV . 0 22 hm5C_associated_SNPs_64733 0 0 1 0 1 ZNF221 chr19:44469956 3'AG 44469956 Downstream 89bp
chr2 85531118 85531118 1 + A C LUAD 85531117 + 85531097 85531137 41 CCCCCTCGGCTGGCTCGTCCCACAGTAAGGAACCCACAGCC CCCCCTCGGCTGGCTCGTCCCCCAGTAAGGAACCCACAGCC < 41bp 0.751628046768267 0.490283760007725 0.092048824 0.032042533 prediction 0.503256093536534 Functional Loss - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85531117 chr2:85531118 synonymous SNV . 0 22 hm5C_associated_SNPs_64734 0 0 1 0 1 TCF7L1 chr2:85531120 5'GT 85531120 Upstream 3bp
chr19 42793230 42793230 1 + G T UCEC 42793228 + 42793208 42793248 41 AAGTAGACAGTCAGGCGCTACAGGAACTGACGCAGGTCTAG AAGTAGACAGTCAGGCGCTACATGAACTGACGCAGGTCTAG < 41bp 0.751625951632001 0.403972721745164 0.8172319 0.54804033 prediction 0.503251903264001 Functional Loss - CIC ENSG00000079432 CDS Human protein_coding chr19:42793228 chr19:42793230 nonsynonymous SNV 0.951 3 23 hm5C_associated_SNPs_64735 0 0 1 0 1 CIC chr19:42793242 5'GT 42793242 Upstream 13bp
chr3 9743521 9743521 1 + C T CESC 9743519 + 9743499 9743539 41 ACTCGGCTGCAGGAGGTGCGCTCAGCCTTCTTGGCTGCGTA ACTCGGCTGCAGGAGGTGCGCTTAGCCTTCTTGGCTGCGTA < 41bp 0.7549286455716 0.503318760928039 0.39981663 0.47399023 prediction 0.503219769287123 Functional Loss - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9743519 chr3:9743521 nonsynonymous SNV 0.971 2 23 hm5C_associated_SNPs_64739 0 0 1 0 1 MTMR14 chr3:9743474 3'AG 9743474 Downstream 48bp
chr12 7476893 7476893 1 + A C SKCM 7476892 + 7476872 7476912 41 AATCCACAGAAAACTGCTGCCACGATAAGAGGAGATTTTTA AATCCACAGAAAACTGCTGCCCCGATAAGAGGAGATTTTTA < 41bp 0.772411380327294 0.520803781797869 0.06810415 0.03238824 prediction 0.503215197058851 Functional Loss - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7476892 chr12:7476893 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_64740 0 0 0 0 1 ACSM4 chr12:7476869 3'AG 7476869 Downstream 25bp
chr19 17424890 17424890 1 + C T LGG 17424888 + 17424868 17424908 41 AGCAATTTTAGTCGATTTCACGCGGACTCCGTGTGCAAAGC AGCAATTTTAGTCGATTTCACGTGGACTCCGTGTGCAAAGC < 41bp 0.751600258537481 0.488142838128667 0.6561177 0.68252724 prediction 0.503200517074962 Functional Loss - DDA1 ENSG00000130311 CDS Human protein_coding chr19:17424888 chr19:17424890 nonsynonymous SNV 0.431 1 23 hm5C_associated_SNPs_64744 0 0 1 0 2 DDA1 chr19:17424832 3'AG 17424832 Downstream 59bp
chr19 17424890 17424890 1 + C T LGG 17424888 + 17424868 17424908 41 AGCAATTTTAGTCGATTTCACGCGGACTCCGTGTGCAAAGC AGCAATTTTAGTCGATTTCACGTGGACTCCGTGTGCAAAGC < 41bp 0.751600258537481 0.488142838128667 0.6561177 0.68252724 prediction 0.503200517074962 Functional Loss - DDA1 ENSG00000130311 CDS Human protein_coding chr19:17424888 chr19:17424890 nonsynonymous SNV 0.431 1 23 hm5C_associated_SNPs_64744 0 0 1 0 2 DDA1 chr19:17424912 5'GT 17424912 Upstream 23bp
chr2 98986519 98986519 1 + C T rs148593890 98986517 + 98986497 98986537 41 CCTCAGACCGAGATCTCAATCGCGCTGAAAATGGCCTCAGC CCTCAGACCGAGATCTCAATCGTGCTGAAAATGGCCTCAGC < 41bp 0.751587173638123 0.498533722469563 0.89759135 0.9030166 prediction 0.503174347276247 Functional Loss - CNGA3 ENSG00000144191 CDS Human protein_coding chr2:98986517 chr2:98986519 synonymous SNV . 0 23 hm5C_associated_SNPs_64749 0 0 0 0 1 CNGA3 chr2:98986539 5'GT 98986539 Upstream 21bp
chr11 73007627 73007627 1 + G C HNSC 73007626 + 73007606 73007646 41 CCCACCACCTGTGTCTACCGCGAGAACTTCAAGCAACTGCT CCCACCACCTGTGTCTACCGCCAGAACTTCAAGCAACTGCT < 41bp 0.751585125910438 0.438983095004481 0.36415994 0.16269523 prediction 0.503170251820876 Functional Loss - P2RY6 ENSG00000171631 CDS Human protein_coding chr11:73007626 chr11:73007627 nonsynonymous SNV 0.597 4 22 hm5C_associated_SNPs_64750 0 0 0 0 1 P2RY6 chr11:73007530 3'AG 73007530 Downstream 98bp
chr4 119621741 119621741 1 + C T UCS 119621739 + 119621719 119621759 41 AATTGATGAGATTGCAGCACCTCGATCATTTATTTTTCTCT AATTGATGAGATTGCAGCACCTTGATCATTTATTTTTCTCT < 41bp 0.751580002814271 0.460144922263896 0.78107476 0.155667 prediction 0.503160005628542 Functional Loss - METTL14 ENSG00000145388 CDS Human protein_coding chr4:119621739 chr4:119621741 stopgain 0.998 1 23 hm5C_associated_SNPs_64752 0 0 1 0 2 METTL14 chr4:119621705 3'AG 119621705 Downstream 37bp
chr4 119621741 119621741 1 + C T UCS 119621739 + 119621719 119621759 41 AATTGATGAGATTGCAGCACCTCGATCATTTATTTTTCTCT AATTGATGAGATTGCAGCACCTTGATCATTTATTTTTCTCT < 41bp 0.751580002814271 0.460144922263896 0.78107476 0.155667 prediction 0.503160005628542 Functional Loss - METTL14 ENSG00000145388 CDS Human protein_coding chr4:119621739 chr4:119621741 stopgain 0.998 1 23 hm5C_associated_SNPs_64752 0 0 1 0 2 METTL14 chr4:119621797 5'GT 119621797 Upstream 57bp
chr16 55806303 55806303 1 + G T ESCA 55806301 + 55806281 55806321 41 CACAGGGGATGAACACAGCCCGGGGAACTGGGGTCACCTGG CACAGGGGATGAACACAGCCCGTGGAACTGGGGTCACCTGG < 41bp 0.879533879182388 0.627958602853145 0.8836602 0.42538464 prediction 0.503150552658485 Functional Loss - CES1P1 ENSG00000228695 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:55806301 chr16:55806303 . . 0 23 hm5C_associated_SNPs_64755 0 0 0 0 1 CES1P1 chr16:55806281 3'AG 55806281 Downstream 23bp
chr18 29049078 29049078 1 + G T LUAD 29049075 + 29049055 29049095 41 CCTCGGCCCTCCTCAGAGCCCAGGAACAGATACCTCCTGGA CCTCGGCCCTCCTCAGAGCCCAGTAACAGATACCTCCTGGA < 41bp 0.751565999630182 0.359111941552779 0.61102283 0.20071802 prediction 0.503131999260365 Functional Loss - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29049075 chr18:29049078 stopgain 0.106 0 24 hm5C_associated_SNPs_64758 0 0 0 0 1 DSG3 chr18:29049052 3'AG 29049052 Downstream 27bp
chr9 35792993 35792993 1 + C T BLCA 35792991 + 35792971 35793011 41 AGGCCCTGCAGGGCAGCAACCTCAGTGTGCAGCACCAGGTG AGGCCCTGCAGGGCAGCAACCTTAGTGTGCAGCACCAGGTG < 41bp 0.763181143474972 0.511622687418331 0.6229897 0.32548106 prediction 0.503116912113283 Functional Loss - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35792991 chr9:35792993 synonymous SNV . 0 23 hm5C_associated_SNPs_64759 0 0 1 0 1 NPR2 chr9:35793072 5'GT 35793072 Upstream 80bp
chr7 139102330 139102330 1 + C T UCEC 139102328 + 139102308 139102348 41 ACATCGATCTCGCTCCATGTCACGTGAACGCAAGAGGAGAA ACATCGATCTCGCTCCATGTCATGTGAACGCAAGAGGAGAA < 41bp 0.814916046334509 0.563386369221733 0.1649254 0.14953607 prediction 0.503059354225551 Functional Loss - C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139102328 chr7:139102330 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_64762 0 0 1 0 1 C7orf55-LUC7L2;LUC7L2 chr7:139102284 3'AG 139102284 Downstream 47bp
chr16 20430755 20430755 1 + C T SKCM 20430753 + 20430733 20430773 41 GGTTGAACTTCAGGGAACTCCTCCGGTGAATTGGGGCTCTC GGTTGAACTTCAGGGAACTCCTTCGGTGAATTGGGGCTCTC < 41bp 0.797526753641003 0.546011307203028 0.9197437 0.71902066 prediction 0.503030892875951 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20430753 chr16:20430755 synonymous SNV . 0 23 hm5C_associated_SNPs_64766 0 0 0 0 1 ACSM5 chr16:20430757 5'GT 20430757 Upstream 3bp
chr1 215793486 215793486 1 + G C LUAD 215793482 + 215793462 215793502 41 CAGAGAAAGTCCTTTATTAGCAAGGGCAAGAAGGACTGAGA CAGAGAAAGTCCTTTATTAGCAAGCGCAAGAAGGACTGAGA < 41bp 0.775544531204811 0.524032367993605 0.9070349 0.7204711 prediction 0.503024326422413 Functional Loss - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215793482 chr1:215793486 nonsynonymous SNV 0.907 2 25 hm5C_associated_SNPs_64767 0 0 1 0 1 KCTD3 chr1:215793399 3'AG 215793399 Downstream 88bp
chr11 71929695 71929695 1 + G T LUAD 71929692 + 71929672 71929712 41 TAGCCACCATGTGCAGTGCCCAGGACAGGACTGATCTCCTC TAGCCACCATGTGCAGTGCCCAGTACAGGACTGATCTCCTC < 41bp 0.91425080459891 0.662741880655428 0.46508443 0.20645523 prediction 0.503017847886964 Functional Loss - FOLR2 ENSG00000165457 CDS Human protein_coding chr11:71929692 chr11:71929695 nonsynonymous SNV 0.023 1 24 hm5C_associated_SNPs_64768 0 0 0 0 3 FOLR2 chr11:71929605 3'AG 71929605 Downstream 91bp
chr11 71929695 71929695 1 + G T LUAD 71929692 + 71929672 71929712 41 TAGCCACCATGTGCAGTGCCCAGGACAGGACTGATCTCCTC TAGCCACCATGTGCAGTGCCCAGTACAGGACTGATCTCCTC < 41bp 0.91425080459891 0.662741880655428 0.46508443 0.20645523 prediction 0.503017847886964 Functional Loss - FOLR2 ENSG00000165457 CDS Human protein_coding chr11:71929692 chr11:71929695 nonsynonymous SNV 0.023 1 24 hm5C_associated_SNPs_64768 0 0 0 0 3 FOLR2 chr11:71929617 3'AG 71929617 Downstream 79bp
chr11 71929695 71929695 1 + G T LUAD 71929692 + 71929672 71929712 41 TAGCCACCATGTGCAGTGCCCAGGACAGGACTGATCTCCTC TAGCCACCATGTGCAGTGCCCAGTACAGGACTGATCTCCTC < 41bp 0.91425080459891 0.662741880655428 0.46508443 0.20645523 prediction 0.503017847886964 Functional Loss - FOLR2 ENSG00000165457 CDS Human protein_coding chr11:71929692 chr11:71929695 nonsynonymous SNV 0.023 1 24 hm5C_associated_SNPs_64768 0 0 0 0 3 FOLR2 chr11:71929778 5'GT 71929778 Upstream 84bp
chrX 152772381 152772381 1 + G T COAD 152772379 + 152772359 152772399 41 CTTCGCTACTCCAAGCTGTACAGGTGAGGCCAGCAGGGCAC CTTCGCTACTCCAAGCTGTACATGTGAGGCCAGCAGGGCAC < 41bp 0.75149599621141 0.398549936773544 0.80456614 0.34149843 prediction 0.502991992422821 Functional Loss - BGN ENSG00000182492 CDS Human protein_coding chrX:152772379 chrX:152772381 nonsynonymous SNV 0.951 3 23 hm5C_associated_SNPs_64771 0 0 0 1 2 BGN chrX:152772288 3'AG 152772288 Downstream 94bp
chrX 152772381 152772381 1 + G T COAD 152772379 + 152772359 152772399 41 CTTCGCTACTCCAAGCTGTACAGGTGAGGCCAGCAGGGCAC CTTCGCTACTCCAAGCTGTACATGTGAGGCCAGCAGGGCAC < 41bp 0.75149599621141 0.398549936773544 0.80456614 0.34149843 prediction 0.502991992422821 Functional Loss - BGN ENSG00000182492 CDS Human protein_coding chrX:152772379 chrX:152772381 nonsynonymous SNV 0.951 3 23 hm5C_associated_SNPs_64771 0 0 0 1 2 BGN chrX:152772381 5'GT 152772381 Upstream 1bp
chr15 69732770 69732770 1 + C T SKCM 69732768 + 69732748 69732788 41 TGAGAAGCCAGAGAGACCCTCTCGGGAGCGAGATCGAGAAA TGAGAAGCCAGAGAGACCCTCTTGGGAGCGAGATCGAGAAA < 41bp 0.751490890329426 0.46549917322953 0.27884537 0.17761377 prediction 0.502981780658852 Functional Loss - KIF23 ENSG00000137807 CDS Human protein_coding chr15:69732768 chr15:69732770 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_64773 0 0 1 0 1 KIF23 chr15:69732826 5'GT 69732826 Upstream 57bp
chr17 5126630 5126630 1 + C T UCEC 5126628 + 5126608 5126648 41 CTAGGTAAAATGGCCATTACCTCGTCTAAGCTGCCACTTAC CTAGGTAAAATGGCCATTACCTTGTCTAAGCTGCCACTTAC < 41bp 0.792942861294164 0.54147162431084 0.59013665 0.43352103 prediction 0.502942473966647 Functional Loss - SCIMP ENSG00000161929 CDS Human antisense chr17:5126628 chr17:5126630 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_64774 0 0 0 0 1 LOC100130950 chr17:5126612 3'AG 5126612 Downstream 19bp
chr10 12204226 12204226 1 + G T BLCA 12204224 + 12204204 12204244 41 CTCGGCAGGTAGCTAAACAGCTGAAAGAACAGCAGATGGTA CTCGGCAGGTAGCTAAACAGCTTAAAGAACAGCAGATGGTA < 41bp 0.751471185764932 0.416493347402295 0.57398087 0.10470453 prediction 0.502942371529864 Functional Loss - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12204224 chr10:12204226 synonymous SNV . 0 23 hm5C_associated_SNPs_64775 0 0 0 0 2 SEC61A2 chr10:12204212 3'AG 12204212 Downstream 15bp
chr10 12204226 12204226 1 + G T BLCA 12204224 + 12204204 12204244 41 CTCGGCAGGTAGCTAAACAGCTGAAAGAACAGCAGATGGTA CTCGGCAGGTAGCTAAACAGCTTAAAGAACAGCAGATGGTA < 41bp 0.751471185764932 0.416493347402295 0.57398087 0.10470453 prediction 0.502942371529864 Functional Loss - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12204224 chr10:12204226 synonymous SNV . 0 23 hm5C_associated_SNPs_64775 0 0 0 0 2 SEC61A2 chr10:12204288 5'GT 12204288 Upstream 63bp
chr10 103919289 103919289 1 + G C LUSC 103919285 + 103919265 103919305 41 AGTGAGGATTCCTCCAGTGACGAGGAAGAGGAGCAAAAAAA AGTGAGGATTCCTCCAGTGACGAGCAAGAGGAGCAAAAAAA < 41bp 0.751468062873688 0.467204776750352 0.8799348 0.31796545 prediction 0.502936125747377 Functional Loss - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919285 chr10:103919289 nonsynonymous SNV 0.977 3 25 hm5C_associated_SNPs_64776 0 0 1 0 2 NOLC1 chr10:103919190 3'AG 103919190 Downstream 100bp
chr10 103919289 103919289 1 + G C LUSC 103919285 + 103919265 103919305 41 AGTGAGGATTCCTCCAGTGACGAGGAAGAGGAGCAAAAAAA AGTGAGGATTCCTCCAGTGACGAGCAAGAGGAGCAAAAAAA < 41bp 0.751468062873688 0.467204776750352 0.8799348 0.31796545 prediction 0.502936125747377 Functional Loss - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919285 chr10:103919289 nonsynonymous SNV 0.977 3 25 hm5C_associated_SNPs_64776 0 0 1 0 2 NOLC1 chr10:103919325 5'GT 103919325 Upstream 37bp
chr19 56363700 56363700 1 + G T PRAD 56363698 + 56363678 56363718 41 AAGATGGATAGAAAGGATCTCTGCATGAAGGTCATGAGGGA AAGATGGATAGAAAGGATCTCTTCATGAAGGTCATGAGGGA < 41bp 0.751459996506685 0.431343505863939 0.36322033 0.27048057 prediction 0.50291999301337 Functional Loss - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56363698 chr19:56363700 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_64777 0 0 0 0 1 NLRP4 chr19:56363726 5'GT 56363726 Upstream 27bp
chr10 75550762 75550762 1 + C T COAD 75550760 + 75550740 75550780 41 AACTCCATGTATCTGTCTTCCACGGAGCCGCCAGCCGCTGC AACTCCATGTATCTGTCTTCCATGGAGCCGCCAGCCGCTGC < 41bp 0.766305950983458 0.514847802280718 0.37014887 0.41284692 prediction 0.502916297405479 Functional Loss - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75550760 chr10:75550762 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_64778 0 0 1 0 1 ZSWIM8 chr10:75550733 3'AG 75550733 Downstream 30bp
chr17 4799604 4799604 1 + G T THYM 4799601 + 4799581 4799621 41 TTCCATGCTGTGGATGTCGACTCGGGGAACAGCTATGACAT TTCCATGCTGTGGATGTCGACTCTGGGAACAGCTATGACAT < 41bp 0.751456440665033 0.368185022756212 0.28327018 0.10675183 prediction 0.502912881330067 Functional Loss - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799601 chr17:4799604 synonymous SNV . 0 24 hm5C_associated_SNPs_64779 0 0 1 0 1 MINK1 chr17:4799637 5'GT 4799637 Upstream 34bp
chr22 29695662 29695662 1 + C T COAD 29695660 + 29695640 29695680 41 GCCTCATGGATCGTGGTGGTCCCGGTGGAATGTTCAGAGGT GCCTCATGGATCGTGGTGGTCCTGGTGGAATGTTCAGAGGT < 41bp 0.751454286747961 0.480632301158423 0.42217118 0.4148305 prediction 0.502908573495921 Functional Loss - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695660 chr22:29695662 synonymous SNV . 0 23 hm5C_associated_SNPs_64782 0 0 1 0 1 EWSR1 chr22:29695589 3'AG 29695589 Downstream 74bp
chr1 76282155 76282155 1 + G T LIHC 76282152 + 76282132 76282172 41 AATCACTGAAGATTTGTTTCCAGGGTAGTGAACAGACAGCC AATCACTGAAGATTTGTTTCCAGTGTAGTGAACAGACAGCC < 41bp 0.751453776316883 0.376041679081881 0.79449296 0.08072066 prediction 0.502907552633766 Functional Loss - MSH4 ENSG00000057468 CDS Human protein_coding chr1:76282152 chr1:76282155 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_64783 0 0 0 0 2 MSH4 chr1:76282058 3'AG 76282058 Downstream 98bp
chr1 76282155 76282155 1 + G T LIHC 76282152 + 76282132 76282172 41 AATCACTGAAGATTTGTTTCCAGGGTAGTGAACAGACAGCC AATCACTGAAGATTTGTTTCCAGTGTAGTGAACAGACAGCC < 41bp 0.751453776316883 0.376041679081881 0.79449296 0.08072066 prediction 0.502907552633766 Functional Loss - MSH4 ENSG00000057468 CDS Human protein_coding chr1:76282152 chr1:76282155 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_64783 0 0 0 0 2 MSH4 chr1:76282231 5'GT 76282231 Upstream 77bp
chr17 8167621 8167621 1 + A T LUSC 8167617 + 8167597 8167637 41 CCCTGCCAACCCCTGTGGACCTGGAGCTCGAATGGGTGCTG CCCTGCCAACCCCTGTGGACCTGGTGCTCGAATGGGTGCTG < 41bp 0.871200834681932 0.619747472691799 0.12251982 0.065196574 prediction 0.502906723980266 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8167617 chr17:8167621 nonsynonymous SNV 0.986 2 25 hm5C_associated_SNPs_64784 0 0 1 0 1 PFAS chr17:8167530 3'AG 8167530 Downstream 92bp
chr12 25257341 25257341 1 + C T UCEC 25257339 + 25257319 25257359 41 TGAACACCGTCCCTCATTACCTCGATTTATTAGCACCTATT TGAACACCGTCCCTCATTACCTTGATTTATTAGCACCTATT < 41bp 0.832325929047581 0.580881671697574 0.8353778 0.17549539 prediction 0.502888514700014 Functional Loss - LRMP ENSG00000118308 CDS Human protein_coding chr12:25257339 chr12:25257341 stopgain 0.991 0 23 hm5C_associated_SNPs_64790 0 0 0 0 2 LRMP chr12:25257295 3'AG 25257295 Downstream 47bp
chr12 25257341 25257341 1 + C T UCEC 25257339 + 25257319 25257359 41 TGAACACCGTCCCTCATTACCTCGATTTATTAGCACCTATT TGAACACCGTCCCTCATTACCTTGATTTATTAGCACCTATT < 41bp 0.832325929047581 0.580881671697574 0.8353778 0.17549539 prediction 0.502888514700014 Functional Loss - LRMP ENSG00000118308 CDS Human protein_coding chr12:25257339 chr12:25257341 stopgain 0.991 0 23 hm5C_associated_SNPs_64790 0 0 0 0 2 LRMP chr12:25257396 5'GT 25257396 Upstream 56bp
chr17 79204427 79204427 1 - C A UCEC 79204430 - 79204410 79204450 41 GGAGCAGCGACCTCCTCCCCCAGGAGCACATCCTCCTCCGC GGAGCAGCGACCTCCTCCCCCAGTAGCACATCCTCCTCCGC < 41bp 0.922496802767779 0.671056174430854 0.92743397 0.2168501 prediction 0.502881256673851 Functional Loss - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79204430 chr17:79204427 stopgain 0.407 0 24 hm5C_associated_SNPs_64791 0 0 0 0 2 TEPSIN chr17:79204344 5'GT 79204344 Upstream 84bp
chr17 79204427 79204427 1 - C A UCEC 79204430 - 79204410 79204450 41 GGAGCAGCGACCTCCTCCCCCAGGAGCACATCCTCCTCCGC GGAGCAGCGACCTCCTCCCCCAGTAGCACATCCTCCTCCGC < 41bp 0.922496802767779 0.671056174430854 0.92743397 0.2168501 prediction 0.502881256673851 Functional Loss - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79204430 chr17:79204427 stopgain 0.407 0 24 hm5C_associated_SNPs_64791 0 0 0 0 2 TEPSIN chr17:79204478 3'AG 79204478 Downstream 52bp
chr19 39760455 39760455 1 + A C rs577518793 39760454 + 39760434 39760474 41 GTACCGGCTCCAGGAGGCCCCAAAAAAGGTGAGTGACCCGG GTACCGGCTCCAGGAGGCCCCCAAAAAGGTGAGTGACCCGG < 41bp 0.761188468613224 0.50977073437333 0.12791052 0.08532348 prediction 0.502835468479787 Functional Loss - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39760454 chr19:39760455 synonymous SNV . 0 22 hm5C_associated_SNPs_64796 0 0 0 0 2 IFNL2 chr19:39760378 3'AG 39760378 Downstream 78bp
chr19 39760455 39760455 1 + A C rs577518793 39760454 + 39760434 39760474 41 GTACCGGCTCCAGGAGGCCCCAAAAAAGGTGAGTGACCCGG GTACCGGCTCCAGGAGGCCCCCAAAAAGGTGAGTGACCCGG < 41bp 0.761188468613224 0.50977073437333 0.12791052 0.08532348 prediction 0.502835468479787 Functional Loss - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39760454 chr19:39760455 synonymous SNV . 0 22 hm5C_associated_SNPs_64796 0 0 0 0 2 IFNL2 chr19:39760461 5'GT 39760461 Upstream 7bp
chr14 39818103 39818103 1 + C T LUSC 39818101 + 39818081 39818121 41 ACCTCCTTTCCCCCCACCTCCTCCAGGAGCCATGTTTGGAG ACCTCCTTTCCCCCCACCTCCTTCAGGAGCCATGTTTGGAG < 41bp 0.823569363727255 0.572154243688595 0.94967663 0.09569341 prediction 0.50283024007732 Functional Loss - MIA2 ENSG00000150527;ENSG00000258941 CDS Human other chr14:39818101 chr14:39818103 nonsynonymous SNV 0.928 2 23 hm5C_associated_SNPs_64798 0 0 1 0 1 MIA2 chr14:39818181 5'GT 39818181 Upstream 79bp
chr1 47264932 47264932 1 + A T CESC 47264928 + 47264908 47264948 41 ACTGGCTTTTTGGACATGCCCTCGAGGTATGTGGAGGTCGG ACTGGCTTTTTGGACATGCCCTCGTGGTATGTGGAGGTCGG < 41bp 0.858284994743599 0.606872190964266 0.28542718 0.06870571 prediction 0.502825607558666 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47264928 chr1:47264932 nonsynonymous SNV 0.024 1 25 hm5C_associated_SNPs_64800 0 0 0 0 1 CYP4B1 chr1:47264933 5'GT 47264933 Upstream 2bp
chr2 231222655 231222655 1 + G T rs10498250 231222653 + 231222633 231222673 41 TCCTTGAGGGCCTCCGCGATCGGGAACTCATCACAAATAAA TCCTTGAGGGCCTCCGCGATCGTGAACTCATCACAAATAAA < 41bp 0.751401939619894 0.422790879866698 0.82758105 0.17058304 prediction 0.502803879239787 Functional Loss - SP140L ENSG00000185404 CDS Human protein_coding chr2:231222653 chr2:231222655 synonymous SNV . 0 23 hm5C_associated_SNPs_64801 0 0 1 0 1 SP140L chr2:231222682 5'GT 231222682 Upstream 28bp
chr12 122670825 122670825 1 + C T rs138068954 122670823 + 122670803 122670843 41 CGAATCAAGGAGGTGGATGCCACCAATCTGCCCCCCACACT CGAATCAAGGAGGTGGATGCCATCAATCTGCCCCCCACACT < 41bp 0.791201304498034 0.53980452973223 0.15870783 0.12824482 prediction 0.502793549531608 Functional Loss - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122670823 chr12:122670825 nonsynonymous SNV 0.048 0 23 hm5C_associated_SNPs_64802 0 0 0 0 2 LRRC43 chr12:122670737 3'AG 122670737 Downstream 89bp
chr12 122670825 122670825 1 + C T rs138068954 122670823 + 122670803 122670843 41 CGAATCAAGGAGGTGGATGCCACCAATCTGCCCCCCACACT CGAATCAAGGAGGTGGATGCCATCAATCTGCCCCCCACACT < 41bp 0.791201304498034 0.53980452973223 0.15870783 0.12824482 prediction 0.502793549531608 Functional Loss - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122670823 chr12:122670825 nonsynonymous SNV 0.048 0 23 hm5C_associated_SNPs_64802 0 0 0 0 2 LRRC43 chr12:122670847 5'GT 122670847 Upstream 23bp
chr7 55249005 55249005 1 + G T LUAD 55249003 + 55248983 55249023 41 CAGGAAGCCTACGTGATGGCCAGCGTGGACAACCCCCACGT CAGGAAGCCTACGTGATGGCCATCGTGGACAACCCCCACGT < 41bp 0.751395459510671 0.406916945994797 0.33462226 0.07835773 prediction 0.502790919021343 Functional Loss - EGFR ENSG00000146648 CDS Human protein_coding chr7:55249003 chr7:55249005 nonsynonymous SNV 0.992 5 23 hm5C_associated_SNPs_64803 3 0 1 0 1 EGFR chr7:55248986 3'AG 55248986 Downstream 20bp
chr20 37169730 37169730 1 + G T COAD 37169727 + 37169707 37169747 41 GATTGTGGAACTGGGTATCTCAGGAAGTAAGTCCAAGAACA GATTGTGGAACTGGGTATCTCAGTAAGTAAGTCCAAGAACA < 41bp 0.751386068746312 0.370209095773751 0.8979572 0.21513528 prediction 0.502772137492623 Functional Loss - RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37169727 chr20:37169730 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_64805 0 0 1 0 1 RALGAPB chr20:37169684 3'AG 37169684 Downstream 47bp
chr4 177241318 177241318 1 + G C LUSC 177241314 + 177241294 177241334 41 ACCTTCGGCTGCTTCATCACCACCGCCTTCAAAGACAGGAG ACCTTCGGCTGCTTCATCACCACCCCCTTCAAAGACAGGAG < 41bp 0.777148418497657 0.525767465383075 0.12534198 0.06275666 prediction 0.502761906229164 Functional Loss - SPCS3 ENSG00000129128 CDS Human protein_coding chr4:177241314 chr4:177241318 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_64807 0 0 1 0 1 SPCS3 chr4:177241370 5'GT 177241370 Upstream 53bp
chrX 99924271 99924271 1 + G T SARC 99924269 + 99924249 99924289 41 CCACCTGTGGACTGGATTTGCGGCATGTGACCATCATTGAA CCACCTGTGGACTGGATTTGCGTCATGTGACCATCATTGAA < 41bp 0.878194288593309 0.626832151082818 0.45883223 0.1444759 prediction 0.502724275020983 Functional Loss - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99924269 chrX:99924271 synonymous SNV . 0 23 hm5C_associated_SNPs_64813 0 0 0 0 2 SRPX2 chrX:99924245 3'AG 99924245 Downstream 27bp
chrX 99924271 99924271 1 + G T SARC 99924269 + 99924249 99924289 41 CCACCTGTGGACTGGATTTGCGGCATGTGACCATCATTGAA CCACCTGTGGACTGGATTTGCGTCATGTGACCATCATTGAA < 41bp 0.878194288593309 0.626832151082818 0.45883223 0.1444759 prediction 0.502724275020983 Functional Loss - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99924269 chrX:99924271 synonymous SNV . 0 23 hm5C_associated_SNPs_64813 0 0 0 0 2 SRPX2 chrX:99924366 5'GT 99924366 Upstream 96bp
chr16 81303956 81303956 1 + G C BLCA 81303952 + 81303932 81303972 41 GCCAACCTGAACCAGGACTTCAAGGAGAACTCCAGGCTCAC GCCAACCTGAACCAGGACTTCAAGCAGAACTCCAGGCTCAC < 41bp 0.833411429534465 0.58205854304357 0.9327079 0.8133944 prediction 0.502705772981789 Functional Loss - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81303952 chr16:81303956 nonsynonymous SNV 0.251 1 25 hm5C_associated_SNPs_64818 0 0 0 0 1 BCO1 chr16:81304021 5'GT 81304021 Upstream 66bp
chr11 35198159 35198159 1 + C T STAD 35198157 + 35198137 35198177 41 GCCGCTTTGCAGGTGTATTCCACGTGGAGAAAAATGGTCGC GCCGCTTTGCAGGTGTATTCCATGTGGAGAAAAATGGTCGC < 41bp 0.75134723149893 0.483355506519399 0.3870799 0.36388475 prediction 0.502694462997859 Functional Loss - CD44 ENSG00000026508 CDS Human protein_coding chr11:35198157 chr11:35198159 synonymous SNV . 0 23 hm5C_associated_SNPs_64819 0 0 1 1 1 CD44 chr11:35198122 3'AG 35198122 Downstream 38bp
chr22 35719502 35719502 1 + C T STAD 35719500 + 35719480 35719520 41 CCCTCTCAGTCCTGGGCTGACGCGTTCCGCAGCTCGCCCGA CCCTCTCAGTCCTGGGCTGACGTGTTCCGCAGCTCGCCCGA < 41bp 0.771611635157094 0.520267332809168 0.17627198 0.14497256 prediction 0.502688604695851 Functional Loss - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35719500 chr22:35719502 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_64821 0 0 1 0 1 TOM1 chr22:35719489 3'AG 35719489 Downstream 14bp
chr11 64138132 64138132 1 + C T SKCM 64138130 + 64138110 64138150 41 GCGCGCGCTCCTCGCCCCCGCTCCGGACGCCCGACGTGCTC GCGCGCGCTCCTCGCCCCCGCTTCGGACGCCCGACGTGCTC < 41bp 0.751343716610577 0.496607494290692 0.3633956 0.2902475 prediction 0.502687433221153 Functional Loss - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64138130 chr11:64138132 synonymous SNV . 0 23 hm5C_associated_SNPs_64822 0 0 0 0 2 RPS6KA4 chr11:64138035 3'AG 64138035 Downstream 98bp
chr11 64138132 64138132 1 + C T SKCM 64138130 + 64138110 64138150 41 GCGCGCGCTCCTCGCCCCCGCTCCGGACGCCCGACGTGCTC GCGCGCGCTCCTCGCCCCCGCTTCGGACGCCCGACGTGCTC < 41bp 0.751343716610577 0.496607494290692 0.3633956 0.2902475 prediction 0.502687433221153 Functional Loss - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64138130 chr11:64138132 synonymous SNV . 0 23 hm5C_associated_SNPs_64822 0 0 0 0 2 RPS6KA4 chr11:64138198 5'GT 64138198 Upstream 67bp
chr3 133191384 133191384 1 + G T LUAD 133191381 + 133191361 133191401 41 AGAAGGACGTGGCGTCCTACCACGCCCTGCTGGACAGGGAG AGAAGGACGTGGCGTCCTACCACTCCCTGCTGGACAGGGAG < 41bp 0.75134322088626 0.358037158836112 0.52194357 0.29659188 prediction 0.50268644177252 Functional Loss - BFSP2 ENSG00000170819 CDS Human protein_coding chr3:133191381 chr3:133191384 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_64823 0 0 0 0 1 BFSP2 chr3:133191409 5'GT 133191409 Upstream 26bp
chr1 6688639 6688639 1 + C T rs138429240 6688637 + 6688617 6688657 41 AACTTCAAGCCCAAGCAGCACACGGTCATCTGCTCCGAGCA AACTTCAAGCCCAAGCAGCACATGGTCATCTGCTCCGAGCA < 41bp 0.784650977661122 0.53331141201884 0.3821861 0.36438847 prediction 0.502679131284565 Functional Loss - THAP3 ENSG00000041988 CDS Human protein_coding chr1:6688637 chr1:6688639 nonsynonymous SNV 0.977 3 23 hm5C_associated_SNPs_64824 0 0 1 0 1 THAP3 chr1:6688559 3'AG 6688559 Downstream 81bp
chr7 127231142 127231142 1 + G T ESCA 127231139 + 127231119 127231159 41 CTACAGCACTTACGCAGCCGCACGGTAGGGGTCCTGCCCAC CTACAGCACTTACGCAGCCGCACTGTAGGGGTCCTGCCCAC < 41bp 0.919400123915958 0.668064018266863 0.14298692 0.013406843 prediction 0.502672211298189 Functional Loss - ARF5 ENSG00000004059 CDS Human protein_coding chr7:127231139 chr7:127231142 synonymous SNV . 0 24 hm5C_associated_SNPs_64825 0 0 1 0 1 ARF5 chr7:127231142 5'GT 127231142 Upstream 1bp
chr3 149205519 149205519 1 + A C rs571739504 149205518 + 149205498 149205538 41 ATGCCTCATGGCCAATAGTACATGGGGCTACCCCTTCCACG ATGCCTCATGGCCAATAGTACCTGGGGCTACCCCTTCCACG < 41bp 0.76256496621517 0.511231984862462 0.25488836 0.1499469 prediction 0.502665962705416 Functional Loss - TM4SF4 ENSG00000169903 CDS Human protein_coding chr3:149205518 chr3:149205519 synonymous SNV . 0 22 hm5C_associated_SNPs_64827 0 0 0 0 1 TM4SF4 chr3:149205542 5'GT 149205542 Upstream 24bp
chr15 65239695 65239695 1 + C T SKCM 65239693 + 65239673 65239713 41 ATCGGCAGGAAACACAGCAGCTCCGTTCTGTGCTGTGGCGG ATCGGCAGGAAACACAGCAGCTTCGTTCTGTGCTGTGGCGG < 41bp 0.751312664101496 0.468584213275981 0.1427984 0.20446855 prediction 0.502625328202992 Functional Loss - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65239693 chr15:65239695 synonymous SNV . 0 23 hm5C_associated_SNPs_64831 0 0 0 0 1 ANKDD1A chr15:65239624 3'AG 65239624 Downstream 72bp
chr15 59799490 59799490 1 + G T LUAD 59799488 + 59799468 59799508 41 TCCAGCACTTGAACAAAGAACAGCAGGCTGCCAAACTTATC TCCAGCACTTGAACAAAGAACATCAGGCTGCCAAACTTATC < 41bp 0.751296188939011 0.417864903234007 0.26228252 0.16639277 prediction 0.502592377878022 Functional Loss - FAM81A ENSG00000157470 CDS Human protein_coding chr15:59799488 chr15:59799490 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_64835 0 0 0 0 2 FAM81A chr15:59799412 3'AG 59799412 Downstream 79bp
chr15 59799490 59799490 1 + G T LUAD 59799488 + 59799468 59799508 41 TCCAGCACTTGAACAAAGAACAGCAGGCTGCCAAACTTATC TCCAGCACTTGAACAAAGAACATCAGGCTGCCAAACTTATC < 41bp 0.751296188939011 0.417864903234007 0.26228252 0.16639277 prediction 0.502592377878022 Functional Loss - FAM81A ENSG00000157470 CDS Human protein_coding chr15:59799488 chr15:59799490 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_64835 0 0 0 0 2 FAM81A chr15:59799541 5'GT 59799541 Upstream 52bp
chr10 5953002 5953002 1 + G T HNSC 5952999 + 5952979 5953019 41 TGCCTCCGGAGACCCAGCTCCACGGTGACCATGCCAGATGT TGCCTCCGGAGACCCAGCTCCACTGTGACCATGCCAGATGT < 41bp 0.751292178424434 0.346197701298418 0.83020496 0.17856961 prediction 0.502584356848868 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5952999 chr10:5953002 synonymous SNV . 0 24 hm5C_associated_SNPs_64836 0 0 1 0 1 FBXO18 chr10:5953091 5'GT 5953091 Upstream 90bp
chr4 42965098 42965098 1 + G T LIHC 42965095 + 42965075 42965115 41 AGTTAGACGAACGATGCCGACGAGTTTCTGAAGCTCCTTCC AGTTAGACGAACGATGCCGACGATTTTCTGAAGCTCCTTCC < 41bp 0.751290419853985 0.368905087866316 0.13780007 0.0757615 prediction 0.502580839707971 Functional Loss - GRXCR1 ENSG00000215203 CDS Human protein_coding chr4:42965095 chr4:42965098 nonsynonymous SNV 0.154 2 24 hm5C_associated_SNPs_64837 0 0 0 0 1 GRXCR1 chr4:42965151 5'GT 42965151 Upstream 54bp
chr9 75309494 75309494 1 + C T UCEC 75309492 + 75309472 75309512 41 GGAGGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGAC GGAGGTGGAAGATAAGCTACCTTGAAGAGAGAGCTTGAGAC < 41bp 0.75128988515483 0.462443624788756 0.3691743 0.1227141 prediction 0.50257977030966 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309492 chr9:75309494 stopgain 0.991 1 23 hm5C_associated_SNPs_64838 2 0 0 10 2 TMC1 chr9:75309447 3'AG 75309447 Downstream 48bp
chr9 75309494 75309494 1 + C T UCEC 75309492 + 75309472 75309512 41 GGAGGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGAC GGAGGTGGAAGATAAGCTACCTTGAAGAGAGAGCTTGAGAC < 41bp 0.75128988515483 0.462443624788756 0.3691743 0.1227141 prediction 0.50257977030966 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309492 chr9:75309494 stopgain 0.991 1 23 hm5C_associated_SNPs_64838 2 0 0 10 2 TMC1 chr9:75309459 3'AG 75309459 Downstream 36bp
chr6 155148320 155148320 1 + C T LUSC 155148318 + 155148298 155148338 41 CTGTCTAGGTTTCATGCCGCCTCCAGTTCCCCCACCTGTTG CTGTCTAGGTTTCATGCCGCCTTCAGTTCCCCCACCTGTTG < 41bp 0.75128277059542 0.457499030201723 0.9001068 0.10370651 prediction 0.502565541190841 Functional Loss - SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155148318 chr6:155148320 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_64839 0 0 1 0 2 SCAF8 chr6:155148306 3'AG 155148306 Downstream 15bp
chr6 155148320 155148320 1 + C T LUSC 155148318 + 155148298 155148338 41 CTGTCTAGGTTTCATGCCGCCTCCAGTTCCCCCACCTGTTG CTGTCTAGGTTTCATGCCGCCTTCAGTTCCCCCACCTGTTG < 41bp 0.75128277059542 0.457499030201723 0.9001068 0.10370651 prediction 0.502565541190841 Functional Loss - SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155148318 chr6:155148320 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_64839 0 0 1 0 2 SCAF8 chr6:155148374 5'GT 155148374 Upstream 55bp
chr3 10242114 10242114 1 + A C UCEC 10242110 + 10242090 10242130 41 CTTCCCTGACTCTGTGAAGCCAGAAAAGCCTTTGGCAGCTT CTTCCCTGACTCTGTGAAGCCAGACAAGCCTTTGGCAGCTT < 41bp 0.751277756132962 0.335676953692562 0.37301356 0.320961 prediction 0.502555512265924 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10242110 chr3:10242114 nonsynonymous SNV 0.395 0 25 hm5C_associated_SNPs_64840 0 0 1 0 2 IRAK2 chr3:10242053 3'AG 10242053 Downstream 62bp
chr3 10242114 10242114 1 + A C UCEC 10242110 + 10242090 10242130 41 CTTCCCTGACTCTGTGAAGCCAGAAAAGCCTTTGGCAGCTT CTTCCCTGACTCTGTGAAGCCAGACAAGCCTTTGGCAGCTT < 41bp 0.751277756132962 0.335676953692562 0.37301356 0.320961 prediction 0.502555512265924 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10242110 chr3:10242114 nonsynonymous SNV 0.395 0 25 hm5C_associated_SNPs_64840 0 0 1 0 2 IRAK2 chr3:10242199 5'GT 10242199 Upstream 86bp
chr3 10183846 10183846 1 + G T LUAD 10183843 + 10183823 10183863 41 TACCCAACGCTGCCGCCTGGCACGGGCCGCCGCATCCACAG TACCCAACGCTGCCGCCTGGCACTGGCCGCCGCATCCACAG < 41bp 0.904777353308 0.653499875841461 0.1347633 0.18823835 prediction 0.502554954933078 Functional Loss - VHL ENSG00000134086 CDS Human protein_coding chr3:10183843 chr3:10183846 synonymous SNV . 0 24 hm5C_associated_SNPs_64841 0 0 1 0 1 VHL chr3:10183871 5'GT 10183871 Upstream 26bp
chr17 72345451 72345451 1 + G T LUAD 72345449 + 72345429 72345469 41 AGACTGGGCGGGGCCAGGCCCGGGGCCGGCAGGATCGGGGT AGACTGGGCGGGGCCAGGCCCGTGGCCGGCAGGATCGGGGT < 41bp 0.901764096797113 0.650511578005819 0.93781227 0.5132151 prediction 0.502505037582588 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72345449 chr17:72345451 synonymous SNV . 0 23 hm5C_associated_SNPs_64844 0 0 0 0 1 KIF19 chr17:72345488 5'GT 72345488 Upstream 38bp
chr11 22384297 22384297 1 + G T LUAD 22384294 + 22384274 22384314 41 TTACACTTTAGGTTCCTATGCCGGAGCTGTGATTGCAATGC TTACACTTTAGGTTCCTATGCCGTAGCTGTGATTGCAATGC < 41bp 0.751249416720279 0.367854728436908 0.863479 0.22840399 prediction 0.502498833440558 Functional Loss - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22384294 chr11:22384297 nonsynonymous SNV 0.785 4 24 hm5C_associated_SNPs_64846 0 0 0 0 2 SLC17A6 chr11:22384285 3'AG 22384285 Downstream 13bp
chr11 22384297 22384297 1 + G T LUAD 22384294 + 22384274 22384314 41 TTACACTTTAGGTTCCTATGCCGGAGCTGTGATTGCAATGC TTACACTTTAGGTTCCTATGCCGTAGCTGTGATTGCAATGC < 41bp 0.751249416720279 0.367854728436908 0.863479 0.22840399 prediction 0.502498833440558 Functional Loss - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22384294 chr11:22384297 nonsynonymous SNV 0.785 4 24 hm5C_associated_SNPs_64846 0 0 0 0 2 SLC17A6 chr11:22384371 5'GT 22384371 Upstream 75bp
chr1 32542848 32542848 1 + G T LUAD 32542845 + 32542825 32542865 41 ACCGTTCTCACGGCAACAGGCTGGAGTCTGTGCCGATCCCT ACCGTTCTCACGGCAACAGGCTGTAGTCTGTGCCGATCCCT < 41bp 0.913365608314526 0.662120614027015 0.3706974 0.1468341 prediction 0.502489988575022 Functional Loss - TMEM39B ENSG00000121775 CDS Human protein_coding chr1:32542845 chr1:32542848 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_64849 0 0 0 0 2 TMEM39B chr1:32542765 3'AG 32542765 Downstream 84bp
chr1 32542848 32542848 1 + G T LUAD 32542845 + 32542825 32542865 41 ACCGTTCTCACGGCAACAGGCTGGAGTCTGTGCCGATCCCT ACCGTTCTCACGGCAACAGGCTGTAGTCTGTGCCGATCCCT < 41bp 0.913365608314526 0.662120614027015 0.3706974 0.1468341 prediction 0.502489988575022 Functional Loss - TMEM39B ENSG00000121775 CDS Human protein_coding chr1:32542845 chr1:32542848 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_64849 0 0 0 0 2 TMEM39B chr1:32542919 5'GT 32542919 Upstream 72bp
chr19 45854274 45854274 1 + A C rs201136879 45854273 + 45854253 45854293 41 CTCCAAGGGCTCCTGGGACTCAGGTGAGGGGGACATCTGGG CTCCAAGGGCTCCTGGGACTCCGGTGAGGGGGACATCTGGG < 41bp 0.751237012180803 0.489418282589385 0.94268703 0.8403699 prediction 0.502474024361605 Functional Loss - KLC3 ENSG00000104892 CDS Human protein_coding chr19:45854273 chr19:45854274 nonsynonymous SNV 0.687 3 22 hm5C_associated_SNPs_64850 0 0 1 0 2 KLC3 chr19:45854212 3'AG 45854212 Downstream 63bp
chr19 45854274 45854274 1 + A C rs201136879 45854273 + 45854253 45854293 41 CTCCAAGGGCTCCTGGGACTCAGGTGAGGGGGACATCTGGG CTCCAAGGGCTCCTGGGACTCCGGTGAGGGGGACATCTGGG < 41bp 0.751237012180803 0.489418282589385 0.94268703 0.8403699 prediction 0.502474024361605 Functional Loss - KLC3 ENSG00000104892 CDS Human protein_coding chr19:45854273 chr19:45854274 nonsynonymous SNV 0.687 3 22 hm5C_associated_SNPs_64850 0 0 1 0 2 KLC3 chr19:45854275 5'GT 45854275 Upstream 2bp
chr19 45854275 45854275 1 + G T STAD 45854273 + 45854253 45854293 41 CTCCAAGGGCTCCTGGGACTCAGGTGAGGGGGACATCTGGG CTCCAAGGGCTCCTGGGACTCATGTGAGGGGGACATCTGGG < 41bp 0.751237012180803 0.40645528346162 0.94268703 0.8248261 prediction 0.502474024361605 Functional Loss - KLC3 ENSG00000104892 CDS Human protein_coding chr19:45854273 chr19:45854275 nonsynonymous SNV 0.745 3 23 hm5C_associated_SNPs_64851 0 0 1 0 2 KLC3 chr19:45854212 3'AG 45854212 Downstream 64bp
chr19 45854275 45854275 1 + G T STAD 45854273 + 45854253 45854293 41 CTCCAAGGGCTCCTGGGACTCAGGTGAGGGGGACATCTGGG CTCCAAGGGCTCCTGGGACTCATGTGAGGGGGACATCTGGG < 41bp 0.751237012180803 0.40645528346162 0.94268703 0.8248261 prediction 0.502474024361605 Functional Loss - KLC3 ENSG00000104892 CDS Human protein_coding chr19:45854273 chr19:45854275 nonsynonymous SNV 0.745 3 23 hm5C_associated_SNPs_64851 0 0 1 0 2 KLC3 chr19:45854275 5'GT 45854275 Upstream 1bp
chr2 89028831 89028831 1 + C T LUSC 89028829 + 89028809 89028849 41 TCCTGCAGTATGGCTTGACCCTCAGTGATCTGGATCGACAC TCCTGCAGTATGGCTTGACCCTTAGTGATCTGGATCGACAC < 41bp 0.821811816838865 0.570598181646641 0.10225433 0.031655997 prediction 0.502427270384449 Functional Loss - RPIA ENSG00000153574 CDS Human protein_coding chr2:89028829 chr2:89028831 synonymous SNV . 0 23 hm5C_associated_SNPs_64856 0 0 1 0 2 RPIA chr2:89028796 3'AG 89028796 Downstream 36bp
chr2 89028831 89028831 1 + C T LUSC 89028829 + 89028809 89028849 41 TCCTGCAGTATGGCTTGACCCTCAGTGATCTGGATCGACAC TCCTGCAGTATGGCTTGACCCTTAGTGATCTGGATCGACAC < 41bp 0.821811816838865 0.570598181646641 0.10225433 0.031655997 prediction 0.502427270384449 Functional Loss - RPIA ENSG00000153574 CDS Human protein_coding chr2:89028829 chr2:89028831 synonymous SNV . 0 23 hm5C_associated_SNPs_64856 0 0 1 0 2 RPIA chr2:89028855 5'GT 89028855 Upstream 25bp
chr19 36166802 36166802 1 + G A STAD 36166799 + 36166779 36166819 41 TGAACTTCACGTCAGCCTTCCGGGCGGCCACTCCGGAGGTG TGAACTTCACGTCAGCCTTCCGGACGGCCACTCCGGAGGTG < 41bp 0.761015693854662 0.5098023776659 0.923153 0.76387835 prediction 0.502426632377525 Functional Loss - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36166799 chr19:36166802 nonsynonymous SNV 0.828 0 24 hm5C_associated_SNPs_64857 0 0 0 0 1 UPK1A chr19:36166742 3'AG 36166742 Downstream 61bp
chr12 119772991 119772991 1 + G C rs144785025 119772987 + 119772967 119773007 41 TGAAGGATTTTTAAGATGACCAAGGTTCCAGCCACCAAGAA TGAAGGATTTTTAAGATGACCAAGCTTCCAGCCACCAAGAA < 41bp 0.751211870291722 0.47355095871089 0.11119032 0.02961427 prediction 0.502423740583445 Functional Loss - CCDC60 ENSG00000183273 CDS Human protein_coding chr12:119772987 chr12:119772991 nonsynonymous SNV 0.260 0 25 hm5C_associated_SNPs_64858 0 0 0 0 1 CCDC60 chr12:119773071 5'GT 119773071 Upstream 81bp
chr9 96415638 96415638 1 + C T GBM 96415636 + 96415616 96415656 41 GGGGCGCCTCTGCCTGGTACCACGTGCTCAAGGTGAGCCAC GGGGCGCCTCTGCCTGGTACCATGTGCTCAAGGTGAGCCAC < 41bp 0.783534410803006 0.532325582908679 0.609834 0.3805865 prediction 0.502417655788653 Functional Loss - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96415636 chr9:96415638 synonymous SNV . 0 23 hm5C_associated_SNPs_64859 0 0 1 0 1 PHF2 chr9:96415647 5'GT 96415647 Upstream 10bp
chr1 85589872 85589872 1 + T C UCEC 85589871 + 85589851 85589891 41 ACTATTCAGAGATCACCTTTCTACAACGACATTATTCTCAC ACTATTCAGAGATCACCTTTCCACAACGACATTATTCTCAC < 41bp 0.789705711497841 0.538498983776187 0.9250177 0.16893867 prediction 0.502413455443308 Functional Loss - WDR63 ENSG00000162643 CDS Human protein_coding chr1:85589871 chr1:85589872 nonsynonymous SNV 0.318 2 22 hm5C_associated_SNPs_64861 0 0 0 0 2 WDR63 chr1:85589804 3'AG 85589804 Downstream 69bp
chr1 85589872 85589872 1 + T C UCEC 85589871 + 85589851 85589891 41 ACTATTCAGAGATCACCTTTCTACAACGACATTATTCTCAC ACTATTCAGAGATCACCTTTCCACAACGACATTATTCTCAC < 41bp 0.789705711497841 0.538498983776187 0.9250177 0.16893867 prediction 0.502413455443308 Functional Loss - WDR63 ENSG00000162643 CDS Human protein_coding chr1:85589871 chr1:85589872 nonsynonymous SNV 0.318 2 22 hm5C_associated_SNPs_64861 0 0 0 0 2 WDR63 chr1:85589934 5'GT 85589934 Upstream 63bp
chr16 2279646 2279646 1 + G T UCEC 2279644 + 2279624 2279664 41 GGTGGAGGCGGCCTCTCTGGCAGCAGACATCAGCCACGCAT GGTGGAGGCGGCCTCTCTGGCATCAGACATCAGCCACGCAT < 41bp 0.889265079115263 0.638076888967161 0.85726225 0.16165233 prediction 0.502376380296205 Functional Loss - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2279644 chr16:2279646 nonsynonymous SNV 0.941 0 23 hm5C_associated_SNPs_64863 0 0 1 0 2 E4F1 chr16:2279571 3'AG 2279571 Downstream 76bp
chr16 2279646 2279646 1 + G T UCEC 2279644 + 2279624 2279664 41 GGTGGAGGCGGCCTCTCTGGCAGCAGACATCAGCCACGCAT GGTGGAGGCGGCCTCTCTGGCATCAGACATCAGCCACGCAT < 41bp 0.889265079115263 0.638076888967161 0.85726225 0.16165233 prediction 0.502376380296205 Functional Loss - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2279644 chr16:2279646 nonsynonymous SNV 0.941 0 23 hm5C_associated_SNPs_64863 0 0 1 0 2 E4F1 chr16:2279676 5'GT 2279676 Upstream 31bp
chr10 38305807 38305807 1 + G T UCEC 38305805 + 38305785 38305825 41 TCTGAATGTTTCAGGTAGAACAGAAGTCCCAGGAGTCAGTA TCTGAATGTTTCAGGTAGAACATAAGTCCCAGGAGTCAGTA < 41bp 0.75118632739602 0.443289794237215 0.075820655 0.037440956 prediction 0.502372654792039 Functional Loss - ZNF33A ENSG00000189180 CDS Human protein_coding chr10:38305805 chr10:38305807 nonsynonymous SNV 0.169 3 23 hm5C_associated_SNPs_64865 0 0 1 3 2 ZNF33A chr10:38305799 3'AG 38305799 Downstream 9bp
chr10 38305807 38305807 1 + G T UCEC 38305805 + 38305785 38305825 41 TCTGAATGTTTCAGGTAGAACAGAAGTCCCAGGAGTCAGTA TCTGAATGTTTCAGGTAGAACATAAGTCCCAGGAGTCAGTA < 41bp 0.75118632739602 0.443289794237215 0.075820655 0.037440956 prediction 0.502372654792039 Functional Loss - ZNF33A ENSG00000189180 CDS Human protein_coding chr10:38305805 chr10:38305807 nonsynonymous SNV 0.169 3 23 hm5C_associated_SNPs_64865 0 0 1 3 2 ZNF33A chr10:38305803 3'AG 38305803 Downstream 5bp
chr1 93724375 93724375 1 + G T GBM 93724372 + 93724352 93724392 41 ACGTGAAGCTCATTTAGAAGCAAGAATGCAAGCAGAAATCA ACGTGAAGCTCATTTAGAAGCAATAATGCAAGCAGAAATCA < 41bp 0.751183812339562 0.395100394309986 0.16305998 0.57240754 prediction 0.502367624679125 Functional Loss - CCDC18 ENSG00000122483 CDS Human protein_coding chr1:93724372 chr1:93724375 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_64866 0 0 1 0 2 CCDC18 chr1:93724305 3'AG 93724305 Downstream 71bp
chr1 93724375 93724375 1 + G T GBM 93724372 + 93724352 93724392 41 ACGTGAAGCTCATTTAGAAGCAAGAATGCAAGCAGAAATCA ACGTGAAGCTCATTTAGAAGCAATAATGCAAGCAGAAATCA < 41bp 0.751183812339562 0.395100394309986 0.16305998 0.57240754 prediction 0.502367624679125 Functional Loss - CCDC18 ENSG00000122483 CDS Human protein_coding chr1:93724372 chr1:93724375 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_64866 0 0 1 0 2 CCDC18 chr1:93724442 5'GT 93724442 Upstream 68bp
chr7 102109080 102109080 1 + C T STAD 102109078 + 102109058 102109098 41 GCCAGACGGGCATCGTGCTCCACAAGTACAAGGCACCCGGC GCCAGACGGGCATCGTGCTCCATAAGTACAAGGCACCCGGC < 41bp 0.788635508139307 0.53745321802793 0.1955252 0.1039536 prediction 0.502364580222756 Functional Loss - LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102109078 chr7:102109080 synonymous SNV . 0 23 hm5C_associated_SNPs_64867 0 0 1 0 2 LRWD1 chr7:102109001 3'AG 102109001 Downstream 80bp
chr7 102109080 102109080 1 + C T STAD 102109078 + 102109058 102109098 41 GCCAGACGGGCATCGTGCTCCACAAGTACAAGGCACCCGGC GCCAGACGGGCATCGTGCTCCATAAGTACAAGGCACCCGGC < 41bp 0.788635508139307 0.53745321802793 0.1955252 0.1039536 prediction 0.502364580222756 Functional Loss - LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102109078 chr7:102109080 synonymous SNV . 0 23 hm5C_associated_SNPs_64867 0 0 1 0 2 LRWD1 chr7:102109101 5'GT 102109101 Upstream 22bp
chr10 75854054 75854054 1 + C T BRCA 75854052 + 75854032 75854072 41 GAAAGGAGATTCTCCAGAGGCTCGAGCCTTGGCCAAACAGG GAAAGGAGATTCTCCAGAGGCTTGAGCCTTGGCCAAACAGG < 41bp 0.751168719185839 0.460718646817026 0.8147821 0.67041874 prediction 0.502337438371678 Functional Loss - VCL ENSG00000035403 CDS Human protein_coding chr10:75854052 chr10:75854054 stopgain 1.000 1 23 hm5C_associated_SNPs_64870 0 0 1 0 1 VCL chr10:75854029 3'AG 75854029 Downstream 26bp
chr5 41911179 41911179 1 + G T HNSC 41911177 + 41911157 41911197 41 ATTTGCTTGGGGATGAGCTACTGGAATGTCTCTCTTGGAGA ATTTGCTTGGGGATGAGCTACTTGAATGTCTCTCTTGGAGA < 41bp 0.873343304203687 0.622178849098001 0.22737205 0.08853978 prediction 0.502328910211373 Functional Loss - C5orf51 ENSG00000205765 CDS Human protein_coding chr5:41911177 chr5:41911179 synonymous SNV . 0 23 hm5C_associated_SNPs_64871 0 0 1 0 1 C5orf51 chr5:41911150 3'AG 41911150 Downstream 30bp
chr12 69085781 69085781 1 + G T PRAD 69085779 + 69085759 69085799 41 GGATGACAGTAACTGGGCAGCTGCATTTTCATCACAGCGTT GGATGACAGTAACTGGGCAGCTTCATTTTCATCACAGCGTT < 41bp 0.751162108257607 0.436325169718674 0.21127635 0.15821749 prediction 0.502324216515214 Functional Loss - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69085779 chr12:69085781 nonsynonymous SNV 0.956 1 23 hm5C_associated_SNPs_64872 0 0 1 0 1 NUP107 chr12:69085748 3'AG 69085748 Downstream 34bp
chr1 45266592 45266592 1 + C T rs41311199 45266590 + 45266570 45266610 41 TCAAAGTCATCCCGCAGAGCCGCGTCGCCAAGCCGCATCAG TCAAAGTCATCCCGCAGAGCCGTGTCGCCAAGCCGCATCAG < 41bp 0.751153721664063 0.499670227525953 0.046819597 0.017293334 prediction 0.502307443328126 Functional Loss - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45266590 chr1:45266592 synonymous SNV . 0 23 hm5C_associated_SNPs_64874 0 0 0 0 2 PLK3 chr1:45266512 3'AG 45266512 Downstream 81bp
chr1 45266592 45266592 1 + C T rs41311199 45266590 + 45266570 45266610 41 TCAAAGTCATCCCGCAGAGCCGCGTCGCCAAGCCGCATCAG TCAAAGTCATCCCGCAGAGCCGTGTCGCCAAGCCGCATCAG < 41bp 0.751153721664063 0.499670227525953 0.046819597 0.017293334 prediction 0.502307443328126 Functional Loss - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45266590 chr1:45266592 synonymous SNV . 0 23 hm5C_associated_SNPs_64874 0 0 0 0 2 PLK3 chr1:45266619 5'GT 45266619 Upstream 28bp
chr2 9588429 9588429 1 + C T LUAD 9588427 + 9588407 9588447 41 TCACATAGAGGTTCATAATCCTCGGAATACAGAAGCAGTGA TCACATAGAGGTTCATAATCCTTGGAATACAGAAGCAGTGA < 41bp 0.751152849252847 0.472098889277665 0.29346174 0.14362863 prediction 0.502305698505694 Functional Loss - CPSF3 ENSG00000119203 CDS Human protein_coding chr2:9588427 chr2:9588429 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_64875 0 0 1 0 1 CPSF3 chr2:9588479 5'GT 9588479 Upstream 51bp
chr16 67680391 67680391 1 + C T PCPG 67680389 + 67680369 67680409 41 CGGCTGGAGAGAAGCAGCCCCTCGGAGTCCACTGACCCCTG CGGCTGGAGAGAAGCAGCCCCTTGGAGTCCACTGACCCCTG < 41bp 0.751147593166775 0.499896907022093 0.1521796 0.13669804 prediction 0.50229518633355 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67680389 chr16:67680391 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_64878 0 0 0 0 2 CARMIL2 chr16:67680329 3'AG 67680329 Downstream 63bp
chr16 67680391 67680391 1 + C T PCPG 67680389 + 67680369 67680409 41 CGGCTGGAGAGAAGCAGCCCCTCGGAGTCCACTGACCCCTG CGGCTGGAGAGAAGCAGCCCCTTGGAGTCCACTGACCCCTG < 41bp 0.751147593166775 0.499896907022093 0.1521796 0.13669804 prediction 0.50229518633355 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67680389 chr16:67680391 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_64878 0 0 0 0 2 CARMIL2 chr16:67680420 5'GT 67680420 Upstream 30bp
chr19 15662199 15662199 1 + A C rs7256787 15662198 + 15662178 15662218 41 CTGAGCGTGGACCGAACGCGCAAGGTGCGGCGGAAGCCGGA CTGAGCGTGGACCGAACGCGCCAGGTGCGGCGGAAGCCGGA < 41bp 0.751524035210665 0.500380056728468 0.7233768 0.56138444 prediction 0.502287956964395 Functional Loss - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15662198 chr19:15662199 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_64879 1 0 0 0 1 CYP4F22 chr19:15662105 3'AG 15662105 Downstream 95bp
chr17 18143931 18143931 1 + C T SKCM 18143929 + 18143909 18143949 41 ACCATGTGGGCTGGCACCAACTCAGGCTCTGTGTTCGCCTA ACCATGTGGGCTGGCACCAACTTAGGCTCTGTGTTCGCCTA < 41bp 0.751128664471726 0.484007920769154 0.4462965 0.3145336 prediction 0.502257328943452 Functional Loss - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18143929 chr17:18143931 nonsynonymous SNV 0.956 4 23 hm5C_associated_SNPs_64880 0 0 1 0 1 LLGL1 chr17:18143892 3'AG 18143892 Downstream 40bp
chr5 140044657 140044657 1 + G T SARC 140044654 + 140044634 140044674 41 TCCATCCGGCCCGTGACCTACTGGCTGCAGGGGACGTGGAC TCCATCCGGCCCGTGACCTACTGTCTGCAGGGGACGTGGAC < 41bp 0.751126204141713 0.368332354895348 0.5636392 0.26091903 prediction 0.502252408283426 Functional Loss - WDR55 ENSG00000120314 CDS Human protein_coding chr5:140044654 chr5:140044657 nonsynonymous SNV 0.727 3 24 hm5C_associated_SNPs_64881 0 0 1 0 1 WDR55 chr5:140044688 5'GT 140044688 Upstream 32bp
chr8 2044190 2044190 1 + G T HNSC 2044188 + 2044168 2044208 41 TCAGTGGTGGCTCGCCCATCCTGGGCTACTACCTGGACAAG TCAGTGGTGGCTCGCCCATCCTTGGCTACTACCTGGACAAG < 41bp 0.751124050288589 0.395669174278116 0.79085195 0.09742224 prediction 0.502248100577178 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2044188 chr8:2044190 synonymous SNV . 0 23 hm5C_associated_SNPs_64882 0 0 0 0 1 MYOM2 chr8:2044274 5'GT 2044274 Upstream 85bp
chr18 21736914 21736914 1 + A C UCEC 21736910 + 21736890 21736930 41 TCCAGAAGGCCTTACTGCACCAGAAATTGAACCAGAAGGGG TCCAGAAGGCCTTACTGCACCAGACATTGAACCAGAAGGGG < 41bp 0.751121533936425 0.351968797969508 0.42725947 0.23154151 prediction 0.502243067872849 Functional Loss - CABYR ENSG00000154040 CDS Human protein_coding chr18:21736910 chr18:21736914 nonsynonymous SNV 0.940 0 25 hm5C_associated_SNPs_64883 0 0 0 0 1 CABYR chr18:21736963 5'GT 21736963 Upstream 50bp
chr18 21736912 21736912 1 + G T UCEC 21736910 + 21736890 21736930 41 TCCAGAAGGCCTTACTGCACCAGAAATTGAACCAGAAGGGG TCCAGAAGGCCTTACTGCACCATAAATTGAACCAGAAGGGG < 41bp 0.751121533936425 0.42505430278362 0.42725947 0.07197696 prediction 0.502243067872849 Functional Loss - CABYR ENSG00000154040 CDS Human protein_coding chr18:21736910 chr18:21736912 stopgain 0.981 0 23 hm5C_associated_SNPs_64884 0 0 0 0 1 CABYR chr18:21736963 5'GT 21736963 Upstream 52bp
chr2 63832446 63832446 1 + G T STAD 63832443 + 63832423 63832463 41 CAGCGTGGCGCTGCTGTCATCAAGGCTCGAAAACTATCCAG CAGCGTGGCGCTGCTGTCATCAATGCTCGAAAACTATCCAG < 41bp 0.914614465565511 0.663493638761065 0.556533 0.10513565 prediction 0.502241653608893 Functional Loss - MDH1 ENSG00000014641 CDS Human protein_coding chr2:63832443 chr2:63832446 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_64885 0 0 1 0 2 MDH1 chr2:63832414 3'AG 63832414 Downstream 33bp
chr2 63832446 63832446 1 + G T STAD 63832443 + 63832423 63832463 41 CAGCGTGGCGCTGCTGTCATCAAGGCTCGAAAACTATCCAG CAGCGTGGCGCTGCTGTCATCAATGCTCGAAAACTATCCAG < 41bp 0.914614465565511 0.663493638761065 0.556533 0.10513565 prediction 0.502241653608893 Functional Loss - MDH1 ENSG00000014641 CDS Human protein_coding chr2:63832443 chr2:63832446 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_64885 0 0 1 0 2 MDH1 chr2:63832527 5'GT 63832527 Upstream 82bp
chr17 72349367 72349367 1 + G T LIHC 72349364 + 72349344 72349384 41 CCACGTGTTCAAGGCTGGTACTGGGGCCTGGCAGGCAAAAA CCACGTGTTCAAGGCTGGTACTGTGGCCTGGCAGGCAAAAA < 41bp 0.751114783404205 0.344520977283405 0.6820053 0.24744272 prediction 0.502229566808409 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72349364 chr17:72349367 nonsynonymous SNV 0.242 0 24 hm5C_associated_SNPs_64887 0 0 0 0 2 KIF19 chr17:72349335 3'AG 72349335 Downstream 33bp
chr17 72349367 72349367 1 + G T LIHC 72349364 + 72349344 72349384 41 CCACGTGTTCAAGGCTGGTACTGGGGCCTGGCAGGCAAAAA CCACGTGTTCAAGGCTGGTACTGTGGCCTGGCAGGCAAAAA < 41bp 0.751114783404205 0.344520977283405 0.6820053 0.24744272 prediction 0.502229566808409 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72349364 chr17:72349367 nonsynonymous SNV 0.242 0 24 hm5C_associated_SNPs_64887 0 0 0 0 2 KIF19 chr17:72349440 5'GT 72349440 Upstream 74bp
chr1 209773417 209773417 1 + G T SARC 209773415 + 209773395 209773435 41 ATCAAGAAGTCACCTGCCTTCCGGGACAGCAGCCTGGAGAA ATCAAGAAGTCACCTGCCTTCCTGGACAGCAGCCTGGAGAA < 41bp 0.751105709938689 0.389888995255079 0.7791636 0.075995 prediction 0.502211419877377 Functional Loss - CAMK1G ENSG00000008118 CDS Human protein_coding chr1:209773415 chr1:209773417 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_64889 0 0 0 0 2 CAMK1G chr1:209773328 3'AG 209773328 Downstream 90bp
chr1 209773417 209773417 1 + G T SARC 209773415 + 209773395 209773435 41 ATCAAGAAGTCACCTGCCTTCCGGGACAGCAGCCTGGAGAA ATCAAGAAGTCACCTGCCTTCCTGGACAGCAGCCTGGAGAA < 41bp 0.751105709938689 0.389888995255079 0.7791636 0.075995 prediction 0.502211419877377 Functional Loss - CAMK1G ENSG00000008118 CDS Human protein_coding chr1:209773415 chr1:209773417 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_64889 0 0 0 0 2 CAMK1G chr1:209773456 5'GT 209773456 Upstream 40bp
chr5 131822029 131822029 1 - T A STAD 131822033 - 131822013 131822053 41 GTGCTGTCAGCAGCACTCTCCCCGACTGGCACATCCCAGTG GTGCTGTCAGCAGCACTCTCCCCGTCTGGCACATCCCAGTG < 41bp 0.751104235911329 0.418024799708252 0.09286368 0.13554683 prediction 0.502208471822659 Functional Loss - IRF1 ENSG00000125347 CDS Human protein_coding chr5:131822033 chr5:131822029 nonsynonymous SNV 0.722 2 25 hm5C_associated_SNPs_64890 0 0 0 0 2 IRF1 chr5:131821943 5'GT 131821943 Upstream 87bp
chr5 131822029 131822029 1 - T A STAD 131822033 - 131822013 131822053 41 GTGCTGTCAGCAGCACTCTCCCCGACTGGCACATCCCAGTG GTGCTGTCAGCAGCACTCTCCCCGTCTGGCACATCCCAGTG < 41bp 0.751104235911329 0.418024799708252 0.09286368 0.13554683 prediction 0.502208471822659 Functional Loss - IRF1 ENSG00000125347 CDS Human protein_coding chr5:131822033 chr5:131822029 nonsynonymous SNV 0.722 2 25 hm5C_associated_SNPs_64890 0 0 0 0 2 IRF1 chr5:131822065 3'AG 131822065 Downstream 37bp
chr22 32239727 32239727 1 + C T rs140039884 32239725 + 32239705 32239745 41 CCTGCTGGGTGGAATTCTCCCACGAACGGCTGGAGGAGTAC CCTGCTGGGTGGAATTCTCCCATGAACGGCTGGAGGAGTAC < 41bp 0.77861020326534 0.527508181144087 0.18240109 0.14486325 prediction 0.502204044242507 Functional Loss - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32239725 chr22:32239727 synonymous SNV . 0 23 hm5C_associated_SNPs_64891 0 0 0 1 2 DEPDC5 chr22:32239631 3'AG 32239631 Downstream 97bp
chr22 32239727 32239727 1 + C T rs140039884 32239725 + 32239705 32239745 41 CCTGCTGGGTGGAATTCTCCCACGAACGGCTGGAGGAGTAC CCTGCTGGGTGGAATTCTCCCATGAACGGCTGGAGGAGTAC < 41bp 0.77861020326534 0.527508181144087 0.18240109 0.14486325 prediction 0.502204044242507 Functional Loss - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32239725 chr22:32239727 synonymous SNV . 0 23 hm5C_associated_SNPs_64891 0 0 0 1 2 DEPDC5 chr22:32239798 5'GT 32239798 Upstream 72bp
chr16 88039782 88039782 1 + C T UCEC 88039780 + 88039760 88039800 41 CACGAGGACGGGGAGAGCGGCTCGGAGGCCAGCGACTCTGT CACGAGGACGGGGAGAGCGGCTTGGAGGCCAGCGACTCTGT < 41bp 0.751101395075188 0.481794932494413 0.5246221 0.21109381 prediction 0.502202790150375 Functional Loss - BANP ENSG00000172530 CDS Human protein_coding chr16:88039780 chr16:88039782 nonsynonymous SNV 0.974 4 23 hm5C_associated_SNPs_64892 0 0 1 0 2 BANP chr16:88039696 3'AG 88039696 Downstream 87bp
chr16 88039782 88039782 1 + C T UCEC 88039780 + 88039760 88039800 41 CACGAGGACGGGGAGAGCGGCTCGGAGGCCAGCGACTCTGT CACGAGGACGGGGAGAGCGGCTTGGAGGCCAGCGACTCTGT < 41bp 0.751101395075188 0.481794932494413 0.5246221 0.21109381 prediction 0.502202790150375 Functional Loss - BANP ENSG00000172530 CDS Human protein_coding chr16:88039780 chr16:88039782 nonsynonymous SNV 0.974 4 23 hm5C_associated_SNPs_64892 0 0 1 0 2 BANP chr16:88039871 5'GT 88039871 Upstream 90bp
chr12 68043592 68043592 1 + G T UCEC 68043590 + 68043570 68043610 41 CTTCCAGGCCGAGGTGGGGACAGCGCCGTTCGTCAGCTTCA CTTCCAGGCCGAGGTGGGGACATCGCCGTTCGTCAGCTTCA < 41bp 0.751099924454804 0.391766856854285 0.7238007 0.5732479 prediction 0.502199848909609 Functional Loss - DYRK2 ENSG00000127334 CDS Human protein_coding chr12:68043590 chr12:68043592 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_64893 0 0 0 0 1 DYRK2 chr12:68043577 3'AG 68043577 Downstream 16bp
chr6 24412566 24412566 1 + C T STAD 24412564 + 24412544 24412584 41 AGTTGTCTGGAGAGGGTCAACTCGTTACATACCCTTTACCT AGTTGTCTGGAGAGGGTCAACTTGTTACATACCCTTTACCT < 41bp 0.819253630166659 0.568157068865716 0.025565058 0.021353304 prediction 0.502193122601885 Functional Loss - MRS2 ENSG00000124532 CDS Human protein_coding chr6:24412564 chr6:24412566 synonymous SNV . 0 23 hm5C_associated_SNPs_64894 0 0 1 0 2 MRS2 chr6:24412514 3'AG 24412514 Downstream 53bp
chr6 24412566 24412566 1 + C T STAD 24412564 + 24412544 24412584 41 AGTTGTCTGGAGAGGGTCAACTCGTTACATACCCTTTACCT AGTTGTCTGGAGAGGGTCAACTTGTTACATACCCTTTACCT < 41bp 0.819253630166659 0.568157068865716 0.025565058 0.021353304 prediction 0.502193122601885 Functional Loss - MRS2 ENSG00000124532 CDS Human protein_coding chr6:24412564 chr6:24412566 synonymous SNV . 0 23 hm5C_associated_SNPs_64894 0 0 1 0 2 MRS2 chr6:24412623 5'GT 24412623 Upstream 58bp
chr18 23714031 23714031 1 + G T LUSC 23714028 + 23714008 23714048 41 GCGGTGAAGAAAGGATCCACCGCGGTGAGGAAGCAACTATT GCGGTGAAGAAAGGATCCACCGCTGTGAGGAAGCAACTATT < 41bp 0.814385077537787 0.563292847404953 0.5019638 0.15051216 prediction 0.502184460265667 Functional Loss - PSMA8 ENSG00000154611 CDS Human protein_coding chr18:23714028 chr18:23714031 synonymous SNV . 0 24 hm5C_associated_SNPs_64896 0 0 0 0 1 PSMA8 chr18:23714031 5'GT 23714031 Upstream 1bp
chr2 27529120 27529120 1 + G T LUAD 27529118 + 27529098 27529138 41 AGGTGGAGCTGGCAGGGCGGCCGGAGCCAGGCTATGAGAGC AGGTGGAGCTGGCAGGGCGGCCTGAGCCAGGCTATGAGAGC < 41bp 0.751083965077848 0.398668870165209 0.90010375 0.6339263 prediction 0.502167930155696 Functional Loss - TRIM54 ENSG00000138100 CDS Human protein_coding chr2:27529118 chr2:27529120 synonymous SNV . 0 23 hm5C_associated_SNPs_64897 0 0 0 0 1 TRIM54 chr2:27529205 5'GT 27529205 Upstream 86bp
chr13 26927935 26927935 1 + G T LUAD 26927932 + 26927912 26927952 41 CAAGAAGCCAGTTCAGTTACCTCGGGGAATGGTGAAGTCAC CAAGAAGCCAGTTCAGTTACCTCTGGGAATGGTGAAGTCAC < 41bp 0.751081548618494 0.369496235207395 0.30249423 0.12233022 prediction 0.502163097236989 Functional Loss - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26927932 chr13:26927935 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_64898 0 0 1 0 2 CDK8 chr13:26927877 3'AG 26927877 Downstream 59bp
chr13 26927935 26927935 1 + G T LUAD 26927932 + 26927912 26927952 41 CAAGAAGCCAGTTCAGTTACCTCGGGGAATGGTGAAGTCAC CAAGAAGCCAGTTCAGTTACCTCTGGGAATGGTGAAGTCAC < 41bp 0.751081548618494 0.369496235207395 0.30249423 0.12233022 prediction 0.502163097236989 Functional Loss - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26927932 chr13:26927935 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_64898 0 0 1 0 2 CDK8 chr13:26928017 5'GT 26928017 Upstream 83bp
chr13 26927934 26927934 1 + C T SKCM 26927932 + 26927912 26927952 41 CAAGAAGCCAGTTCAGTTACCTCGGGGAATGGTGAAGTCAC CAAGAAGCCAGTTCAGTTACCTTGGGGAATGGTGAAGTCAC < 41bp 0.751081548618494 0.468737703625802 0.30249423 0.38879597 prediction 0.502163097236989 Functional Loss - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26927932 chr13:26927934 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_64899 0 0 1 0 2 CDK8 chr13:26927877 3'AG 26927877 Downstream 58bp
chr13 26927934 26927934 1 + C T SKCM 26927932 + 26927912 26927952 41 CAAGAAGCCAGTTCAGTTACCTCGGGGAATGGTGAAGTCAC CAAGAAGCCAGTTCAGTTACCTTGGGGAATGGTGAAGTCAC < 41bp 0.751081548618494 0.468737703625802 0.30249423 0.38879597 prediction 0.502163097236989 Functional Loss - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26927932 chr13:26927934 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_64899 0 0 1 0 2 CDK8 chr13:26928017 5'GT 26928017 Upstream 84bp
chr15 27188486 27188486 1 + G C LUSC 27188482 + 27188462 27188502 41 GTGCTATGCCTTCGTCTTCTCGGCGCTGATAGAGTTTGCCA GTGCTATGCCTTCGTCTTCTCGGCCCTGATAGAGTTTGCCA < 41bp 0.818187871485977 0.567108171613696 0.8239921 0.27323848 prediction 0.502159399744562 Functional Loss - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27188482 chr15:27188486 synonymous SNV . 0 25 hm5C_associated_SNPs_64900 0 0 0 0 1 GABRA5 chr15:27188573 5'GT 27188573 Upstream 88bp
chr3 128990639 128990639 1 + G T LUSC 128990636 + 128990616 128990656 41 TGGCAGCAGTGCCAGAGTTCCGCGGTCTTGGGCCCCTCTTC TGGCAGCAGTGCCAGAGTTCCGCTGTCTTGGGCCCCTCTTC < 41bp 0.922100973086631 0.671025347916971 0.91226923 0.85261333 prediction 0.502151250339319 Functional Loss - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128990636 chr3:128990639 nonsynonymous SNV 0.136 2 24 hm5C_associated_SNPs_64902 0 0 1 0 1 COPG1 chr3:128990610 3'AG 128990610 Downstream 30bp
chr7 55231511 55231511 1 + G T UCEC 55231509 + 55231489 55231529 41 GGCCATGAACATCACCTGCACAGGACGGGTAAGAGCCCCTT GGCCATGAACATCACCTGCACATGACGGGTAAGAGCCCCTT < 41bp 0.751049854757318 0.41595524500191 0.26142788 0.053945035 prediction 0.502099709514637 Functional Loss - EGFR ENSG00000146648 CDS Human protein_coding chr7:55231509 chr7:55231511 stopgain 0.456 1 23 hm5C_associated_SNPs_64909 0 0 1 0 2 EGFR chr7:55231426 3'AG 55231426 Downstream 86bp
chr7 55231511 55231511 1 + G T UCEC 55231509 + 55231489 55231529 41 GGCCATGAACATCACCTGCACAGGACGGGTAAGAGCCCCTT GGCCATGAACATCACCTGCACATGACGGGTAAGAGCCCCTT < 41bp 0.751049854757318 0.41595524500191 0.26142788 0.053945035 prediction 0.502099709514637 Functional Loss - EGFR ENSG00000146648 CDS Human protein_coding chr7:55231509 chr7:55231511 stopgain 0.456 1 23 hm5C_associated_SNPs_64909 0 0 1 0 2 EGFR chr7:55231516 5'GT 55231516 Upstream 6bp
chr17 73222192 73222192 1 + T C UCEC 73222191 + 73222171 73222211 41 GTGAGAGCAGCCCAGAACCCCTGGACAACATCTTGTTGGCA GTGAGAGCAGCCCAGAACCCCCGGACAACATCTTGTTGGCA < 41bp 0.765039680206235 0.513994409125615 0.34989527 0.39181963 prediction 0.50209054216124 Functional Loss - NUP85 ENSG00000125450 CDS Human protein_coding chr17:73222191 chr17:73222192 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_64910 0 0 1 0 2 NUP85 chr17:73222146 3'AG 73222146 Downstream 47bp
chr17 73222192 73222192 1 + T C UCEC 73222191 + 73222171 73222211 41 GTGAGAGCAGCCCAGAACCCCTGGACAACATCTTGTTGGCA GTGAGAGCAGCCCAGAACCCCCGGACAACATCTTGTTGGCA < 41bp 0.765039680206235 0.513994409125615 0.34989527 0.39181963 prediction 0.50209054216124 Functional Loss - NUP85 ENSG00000125450 CDS Human protein_coding chr17:73222191 chr17:73222192 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_64910 0 0 1 0 2 NUP85 chr17:73222252 5'GT 73222252 Upstream 61bp
chr6 55264054 55264054 1 + A T STAD 55264050 + 55264030 55264070 41 TGCAAACAAAATCACTTTAACTGGATTTCATTCCCCCTTCA TGCAAACAAAATCACTTTAACTGGTTTTCATTCCCCCTTCA < 41bp 0.855691453099664 0.604646653499431 0.8148849 0.4387194 prediction 0.502089599200466 Functional Loss - GFRAL ENSG00000187871 CDS Human protein_coding chr6:55264050 chr6:55264054 synonymous SNV . 0 25 hm5C_associated_SNPs_64911 0 0 0 0 2 GFRAL chr6:55263978 3'AG 55263978 Downstream 77bp
chr6 55264054 55264054 1 + A T STAD 55264050 + 55264030 55264070 41 TGCAAACAAAATCACTTTAACTGGATTTCATTCCCCCTTCA TGCAAACAAAATCACTTTAACTGGTTTTCATTCCCCCTTCA < 41bp 0.855691453099664 0.604646653499431 0.8148849 0.4387194 prediction 0.502089599200466 Functional Loss - GFRAL ENSG00000187871 CDS Human protein_coding chr6:55264050 chr6:55264054 synonymous SNV . 0 25 hm5C_associated_SNPs_64911 0 0 0 0 2 GFRAL chr6:55264073 5'GT 55264073 Upstream 20bp
chr12 108012011 108012011 1 + G C BLCA 108012010 + 108011990 108012030 41 TCCCTGGAGGAGATTCTGGCCGAGGGGACTGACCTGGCGGA TCCCTGGAGGAGATTCTGGCCCAGGGGACTGACCTGGCGGA < 41bp 0.751033830457675 0.450929407561768 0.92336476 0.7883954 prediction 0.50206766091535 Functional Loss - BTBD11 ENSG00000151136 CDS Human protein_coding chr12:108012010 chr12:108012011 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_64913 0 0 0 0 1 BTBD11 chr12:108011935 3'AG 108011935 Downstream 77bp
chrX 65480098 65480098 1 + C T SKCM 65480096 + 65480076 65480116 41 GACCCTCTTCACTGTTTTTTCTCGAACAGGTAAGTCCTAAC GACCCTCTTCACTGTTTTTTCTTGAACAGGTAAGTCCTAAC < 41bp 0.751033429627084 0.464968420983657 0.32844216 0.0537993 prediction 0.502066859254169 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65480096 chrX:65480098 stopgain 0.171 0 23 hm5C_associated_SNPs_64914 0 0 0 0 1 HEPH chrX:65480104 5'GT 65480104 Upstream 7bp
chr1 248039235 248039235 1 + C T GBM 248039233 + 248039213 248039253 41 CTGGATCCCGCCACGGCGCACCCGAGTCTGCTCTTGACCGC CTGGATCCCGCCACGGCGCACCTGAGTCTGCTCTTGACCGC < 41bp 0.785028466607914 0.533996787885427 0.10314846 0.095247686 prediction 0.502063357444974 Functional Loss - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039233 chr1:248039235 nonsynonymous SNV 0.005 4 23 hm5C_associated_SNPs_64915 0 0 0 0 1 TRIM58 chr1:248039202 3'AG 248039202 Downstream 34bp
chrX 51637427 51637427 1 + G C UCEC 51637426 + 51637406 51637446 41 TCAGAAAATGGACTGTGGTGCGGGCCTCCTCGGCTTCCAGG TCAGAAAATGGACTGTGGTGCCGGCCTCCTCGGCTTCCAGG < 41bp 0.751022212142026 0.437900114622919 0.8435956 0.27252686 prediction 0.502044424284052 Functional Loss - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51637426 chrX:51637427 synonymous SNV . 0 22 hm5C_associated_SNPs_64917 0 0 1 0 2 MAGED1 chrX:51637365 3'AG 51637365 Downstream 63bp
chrX 51637427 51637427 1 + G C UCEC 51637426 + 51637406 51637446 41 TCAGAAAATGGACTGTGGTGCGGGCCTCCTCGGCTTCCAGG TCAGAAAATGGACTGTGGTGCCGGCCTCCTCGGCTTCCAGG < 41bp 0.751022212142026 0.437900114622919 0.8435956 0.27252686 prediction 0.502044424284052 Functional Loss - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51637426 chrX:51637427 synonymous SNV . 0 22 hm5C_associated_SNPs_64917 0 0 1 0 2 MAGED1 chrX:51637445 5'GT 51637445 Upstream 19bp
chr7 76144455 76144455 1 + A C rs1799125 76144451 + 76144431 76144471 41 CATGACCCACCACATCCCACCCAGAGAGGCCGCCACACTGC CATGACCCACCACATCCCACCCAGCGAGGCCGCCACACTGC < 41bp 0.751018406938053 0.348255603923458 0.11432889 0.09056908 prediction 0.502036813876106 Functional Loss - UPK3B ENSG00000243566 CDS Human protein_coding chr7:76144451 chr7:76144455 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_64918 0 0 0 0 1 UPK3B chr7:76144362 3'AG 76144362 Downstream 94bp
chr8 145134983 145134983 1 + C T SKCM 145134981 + 145134961 145135001 41 CCTGTGAGATGGGCCTGCAGCTCCGCCAGACTTTCGAAGCA CCTGTGAGATGGGCCTGCAGCTTCGCCAGACTTTCGAAGCA < 41bp 0.75101488128117 0.479017869872937 0.22336537 0.09122023 prediction 0.502029762562339 Functional Loss - EXOSC4 ENSG00000178896 CDS Human protein_coding chr8:145134981 chr8:145134983 synonymous SNV . 0 23 hm5C_associated_SNPs_64919 0 0 1 0 1 EXOSC4 chr8:145135052 5'GT 145135052 Upstream 70bp
chr14 68112474 68112474 1 + C T BLCA 68112472 + 68112452 68112492 41 TTACCACTTCATCAGGAAATCTCCATGGACAGCCAGTTTCA TTACCACTTCATCAGGAAATCTTCATGGACAGCCAGTTTCA < 41bp 0.842847392554524 0.59183634631289 0.9710487 0.123398095 prediction 0.502022092483267 Functional Loss - ARG2 ENSG00000081181 CDS Human protein_coding chr14:68112472 chr14:68112474 synonymous SNV . 0 23 hm5C_associated_SNPs_64920 0 0 1 0 1 ARG2 chr14:68112519 5'GT 68112519 Upstream 46bp
chr17 46928470 46928470 1 + A C UCEC 46928466 + 46928446 46928486 41 TATAGGAGGAGCTAGAAACCCTACAGAGCATCAATAAGAAG TATAGGAGGAGCTAGAAACCCTACCGAGCATCAATAAGAAG < 41bp 0.751000370947841 0.324865038457666 0.2895119 0.086040914 prediction 0.502000741895682 Functional Loss - CALCOCO2 ENSG00000136436 CDS Human protein_coding chr17:46928466 chr17:46928470 nonsynonymous SNV 0.682 1 25 hm5C_associated_SNPs_64923 0 0 1 0 2 CALCOCO2 chr17:46928451 3'AG 46928451 Downstream 20bp
chr17 46928470 46928470 1 + A C UCEC 46928466 + 46928446 46928486 41 TATAGGAGGAGCTAGAAACCCTACAGAGCATCAATAAGAAG TATAGGAGGAGCTAGAAACCCTACCGAGCATCAATAAGAAG < 41bp 0.751000370947841 0.324865038457666 0.2895119 0.086040914 prediction 0.502000741895682 Functional Loss - CALCOCO2 ENSG00000136436 CDS Human protein_coding chr17:46928466 chr17:46928470 nonsynonymous SNV 0.682 1 25 hm5C_associated_SNPs_64923 0 0 1 0 2 CALCOCO2 chr17:46928539 5'GT 46928539 Upstream 70bp
chr21 47330830 47330830 1 + G T UCEC 47330828 + 47330808 47330848 41 CTCTCCAGTCCACAGGTGCCCAGGTGCAGGTGGCTGGGGAC CTCTCCAGTCCACAGGTGCCCATGTGCAGGTGGCTGGGGAC < 41bp 0.75099408532314 0.387815954984386 0.90984464 0.18030769 prediction 0.501988170646281 Functional Loss - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47330828 chr21:47330830 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_64924 0 0 0 0 1 PCBP3 chr21:47330816 3'AG 47330816 Downstream 15bp
chr1 146747042 146747042 1 + A T UCEC 146747038 + 146747018 146747058 41 TGGAGTTGGCATGAACTTAACAGCAGCAGATACTGTGATTT TGGAGTTGGCATGAACTTAACAGCTGCAGATACTGTGATTT < 41bp 0.750990184309253 0.44138056115057 0.35577694 0.20256343 prediction 0.501980368618505 Functional Loss - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146747038 chr1:146747042 synonymous SNV . 0 25 hm5C_associated_SNPs_64925 0 0 1 3 2 CHD1L chr1:146747017 3'AG 146747017 Downstream 26bp
chr1 146747042 146747042 1 + A T UCEC 146747038 + 146747018 146747058 41 TGGAGTTGGCATGAACTTAACAGCAGCAGATACTGTGATTT TGGAGTTGGCATGAACTTAACAGCTGCAGATACTGTGATTT < 41bp 0.750990184309253 0.44138056115057 0.35577694 0.20256343 prediction 0.501980368618505 Functional Loss - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146747038 chr1:146747042 synonymous SNV . 0 25 hm5C_associated_SNPs_64925 0 0 1 3 2 CHD1L chr1:146747131 5'GT 146747131 Upstream 90bp
chr19 56549488 56549488 1 + A C OV 56549487 + 56549467 56549507 41 TCTCTGAGCCTGGCAGGAAACAAGGTGACAGACCAGGGAGT TCTCTGAGCCTGGCAGGAAACCAGGTGACAGACCAGGGAGT < 41bp 0.792991153806664 0.542004688087301 0.9247787 0.9307308 prediction 0.501972931438726 Functional Loss - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56549487 chr19:56549488 nonsynonymous SNV 0.012 0 22 hm5C_associated_SNPs_64926 0 0 0 0 2 NLRP5 chr19:56549391 3'AG 56549391 Downstream 98bp
chr19 56549488 56549488 1 + A C OV 56549487 + 56549467 56549507 41 TCTCTGAGCCTGGCAGGAAACAAGGTGACAGACCAGGGAGT TCTCTGAGCCTGGCAGGAAACCAGGTGACAGACCAGGGAGT < 41bp 0.792991153806664 0.542004688087301 0.9247787 0.9307308 prediction 0.501972931438726 Functional Loss - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56549487 chr19:56549488 nonsynonymous SNV 0.012 0 22 hm5C_associated_SNPs_64926 0 0 0 0 2 NLRP5 chr19:56549561 5'GT 56549561 Upstream 74bp
chr1 1956964 1956964 1 + C T COAD 1956962 + 1956942 1956982 41 GTGCCACCTCCACAGGAGTACACCATGACGGTGTTCCTGCA GTGCCACCTCCACAGGAGTACATCATGACGGTGTTCCTGCA < 41bp 0.750982111192769 0.476193427094583 0.27789125 0.35176802 prediction 0.501964222385539 Functional Loss - GABRD ENSG00000187730 CDS Human protein_coding chr1:1956962 chr1:1956964 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_64928 0 0 0 0 1 GABRD chr1:1956957 3'AG 1956957 Downstream 8bp
chr3 50211374 50211374 1 + C T BRCA 50211372 + 50211352 50211392 41 TGGACCTGCACGACATCAACCGCGAGCCCCTCATTGTAAGG TGGACCTGCACGACATCAACCGTGAGCCCCTCATTGTAAGG < 41bp 0.750976230764632 0.479014715013384 0.20192477 0.102353245 prediction 0.501952461529263 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50211372 chr3:50211374 synonymous SNV . 0 23 hm5C_associated_SNPs_64931 0 0 1 0 1 SEMA3F chr3:50211386 5'GT 50211386 Upstream 13bp
chr19 42352883 42352883 1 + G T UCEC 42352881 + 42352861 42352901 41 AGAACTCCTGTGGGCCTCTGCTGCTCAGCCATCCCCCGGAA AGAACTCCTGTGGGCCTCTGCTTCTCAGCCATCCCCCGGAA < 41bp 0.7509729660791 0.393796884075596 0.082306266 0.07254547 prediction 0.5019459321582 Functional Loss - DMRTC2 ENSG00000142025 CDS Human protein_coding chr19:42352881 chr19:42352883 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_64932 0 0 0 0 2 DMRTC2 chr19:42352823 3'AG 42352823 Downstream 61bp
chr19 42352883 42352883 1 + G T UCEC 42352881 + 42352861 42352901 41 AGAACTCCTGTGGGCCTCTGCTGCTCAGCCATCCCCCGGAA AGAACTCCTGTGGGCCTCTGCTTCTCAGCCATCCCCCGGAA < 41bp 0.7509729660791 0.393796884075596 0.082306266 0.07254547 prediction 0.5019459321582 Functional Loss - DMRTC2 ENSG00000142025 CDS Human protein_coding chr19:42352881 chr19:42352883 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_64932 0 0 0 0 2 DMRTC2 chr19:42352863 3'AG 42352863 Downstream 21bp
chr17 61566100 61566100 1 + C T SKCM 61566098 + 61566078 61566118 41 ACAAGGCGGGGAGAGCCATCCTCCAGTTTTACCCGAAATAC ACAAGGCGGGGAGAGCCATCCTTCAGTTTTACCCGAAATAC < 41bp 0.825050958602673 0.574084005985153 0.88709456 0.12304777 prediction 0.501933905235038 Functional Loss - ACE ENSG00000159640;ENSG00000264813 CDS Human other chr17:61566098 chr17:61566100 synonymous SNV . 0 23 hm5C_associated_SNPs_64934 0 0 0 0 2 ACE chr17:61566009 3'AG 61566009 Downstream 92bp
chr17 61566100 61566100 1 + C T SKCM 61566098 + 61566078 61566118 41 ACAAGGCGGGGAGAGCCATCCTCCAGTTTTACCCGAAATAC ACAAGGCGGGGAGAGCCATCCTTCAGTTTTACCCGAAATAC < 41bp 0.825050958602673 0.574084005985153 0.88709456 0.12304777 prediction 0.501933905235038 Functional Loss - ACE ENSG00000159640;ENSG00000264813 CDS Human other chr17:61566098 chr17:61566100 synonymous SNV . 0 23 hm5C_associated_SNPs_64934 0 0 0 0 2 ACE chr17:61566152 5'GT 61566152 Upstream 53bp
chr22 42141925 42141925 1 + G T UCEC 42141923 + 42141903 42141943 41 TCCAGAGTGAGCCTTCAGCCCAGGAGAATCCATTCACAGCT TCCAGAGTGAGCCTTCAGCCCATGAGAATCCATTCACAGCT < 41bp 0.750955249147829 0.42555637171332 0.5212577 0.09534687 prediction 0.501910498295657 Functional Loss - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42141923 chr22:42141925 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_64940 0 0 0 1 1 MEI1 chr22:42141889 3'AG 42141889 Downstream 37bp
chr6 41076090 41076090 1 + G T SARC 41076088 + 41076068 41076108 41 AGGTTATTGTTGGAGATGAGCGGCAGCAATACCTCTTGGTG AGGTTATTGTTGGAGATGAGCGTCAGCAATACCTCTTGGTG < 41bp 0.750954865586713 0.422454272457503 0.8521651 0.40751338 prediction 0.501909731173427 Functional Loss - ADCY10P1 ENSG00000161912 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:41076088 chr6:41076090 . . 0 23 hm5C_associated_SNPs_64941 0 0 1 0 1 ADCY10P1 chr6:41076044 3'AG 41076044 Downstream 47bp
chr2 239002529 239002529 1 + G C BLCA 239002525 + 239002505 239002545 41 GCGGAGCTGGTGACCCAGAACTGCGAGGCTTATGAGGCCCA GCGGAGCTGGTGACCCAGAACTGCCAGGCTTATGAGGCCCA < 41bp 0.829304542266122 0.57836044889891 0.33942246 0.104412794 prediction 0.501888186734424 Functional Loss - SCLY ENSG00000132330 CDS Human protein_coding chr2:239002525 chr2:239002529 nonsynonymous SNV 0.100 0 25 hm5C_associated_SNPs_64944 0 0 1 0 2 SCLY chr2:239002502 3'AG 239002502 Downstream 28bp
chr2 239002529 239002529 1 + G C BLCA 239002525 + 239002505 239002545 41 GCGGAGCTGGTGACCCAGAACTGCGAGGCTTATGAGGCCCA GCGGAGCTGGTGACCCAGAACTGCCAGGCTTATGAGGCCCA < 41bp 0.829304542266122 0.57836044889891 0.33942246 0.104412794 prediction 0.501888186734424 Functional Loss - SCLY ENSG00000132330 CDS Human protein_coding chr2:239002525 chr2:239002529 nonsynonymous SNV 0.100 0 25 hm5C_associated_SNPs_64944 0 0 1 0 2 SCLY chr2:239002585 5'GT 239002585 Upstream 57bp
chr12 107080806 107080806 1 + C T LUAD 107080804 + 107080784 107080824 41 CATATTCACCCCGGTCCAAACTCGGAACACTGCTGCCAGAA CATATTCACCCCGGTCCAAACTTGGAACACTGCTGCCAGAA < 41bp 0.750935446200652 0.460678483303757 0.20490366 0.18810844 prediction 0.501870892401304 Functional Loss - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107080804 chr12:107080806 synonymous SNV . 0 23 hm5C_associated_SNPs_64948 0 0 0 0 1 RFX4 chr12:107080875 5'GT 107080875 Upstream 70bp
chr2 132288316 132288316 1 + G T LUAD 132288314 + 132288294 132288334 41 AGGCAAGCGTGGGCGTCTTGCGGGCGGTAGCGCCGACACTG AGGCAAGCGTGGGCGTCTTGCGTGCGGTAGCGCCGACACTG < 41bp 0.892836486386135 0.641916879282475 0.9254106 0.58690214 prediction 0.501839214207321 Functional Loss - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132288314 chr2:132288316 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_64952 0 0 0 0 1 CCDC74A chr2:132288400 5'GT 132288400 Upstream 85bp
chr19 3282373 3282373 1 + G A UCEC 3282370 + 3282350 3282390 41 GGCTGCACTCACCCCCGCTGCTGGGCACCACCGCTGTGCCT GGCTGCACTCACCCCCGCTGCTGAGCACCACCGCTGTGCCT < 41bp 0.758164280067818 0.507254868127728 0.29136667 0.11918467 prediction 0.50181882388018 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3282370 chr19:3282373 nonsynonymous SNV 0.917 0 24 hm5C_associated_SNPs_64955 0 0 0 0 1 CELF5 chr19:3282350 3'AG 3282350 Downstream 24bp
chr5 68805645 68805645 1 + A T UCEC 68805641 + 68805621 68805661 41 ACTACTGTGTTGTGGATCCCCAGGAGGTATGAGTGGTGTTT ACTACTGTGTTGTGGATCCCCAGGTGGTATGAGTGGTGTTT < 41bp 0.846526047776085 0.595617036072483 0.8712381 0.8172319 prediction 0.501818023407203 Functional Loss - OCLN ENSG00000197822 CDS Human protein_coding chr5:68805641 chr5:68805645 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_64956 0 0 1 0 1 OCLN chr5:68805646 5'GT 68805646 Upstream 2bp
chr19 18047332 18047332 1 + G T ESCA 18047329 + 18047309 18047349 41 ATGCCAAGAAGCAGAAGGAGCTGGAGGATGCCTACTGGAAG ATGCCAAGAAGCAGAAGGAGCTGTAGGATGCCTACTGGAAG < 41bp 0.909472016526996 0.658569424479335 0.3771361 0.21664631 prediction 0.501805184095322 Functional Loss - CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18047329 chr19:18047332 stopgain 1.000 1 24 hm5C_associated_SNPs_64960 0 0 1 0 1 CCDC124 chr19:18047388 5'GT 18047388 Upstream 57bp
chr20 30602817 30602817 1 + C T HNSC 30602815 + 30602795 30602835 41 ACTCGATGCCCCTTTATCCCCCCGACTACCTCATCGACCCC ACTCGATGCCCCTTTATCCCCCTGACTACCTCATCGACCCC < 41bp 0.750900834775631 0.481567515722238 0.043162227 0.06509966 prediction 0.501801669551261 Functional Loss - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30602815 chr20:30602817 synonymous SNV . 0 23 hm5C_associated_SNPs_64961 0 0 0 0 1 CCM2L chr20:30602874 5'GT 30602874 Upstream 58bp
chr9 131755506 131755506 1 + G T COAD 131755503 + 131755483 131755523 41 CAATGTCAGTGTATGCTTGTCTGGGCAATGATGCGGCTGCC CAATGTCAGTGTATGCTTGTCTGTGCAATGATGCGGCTGCC < 41bp 0.750887367836877 0.35628087710092 0.7657771 0.27144033 prediction 0.501774735673755 Functional Loss - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131755503 chr9:131755506 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_64964 0 0 1 0 1 NUP188 chr9:131755476 3'AG 131755476 Downstream 31bp
chr17 1678395 1678395 1 + G T UCEC 1678392 + 1678372 1678412 41 GACTCCAGAAAGACTTCCCTCGAGGATTTCTACTTGGATGA GACTCCAGAAAGACTTCCCTCGATGATTTCTACTTGGATGA < 41bp 0.750885292595794 0.352781994464319 0.8978681 0.1263834 prediction 0.501770585191587 Functional Loss - SERPINF1 ENSG00000132386 CDS Human protein_coding chr17:1678392 chr17:1678395 nonsynonymous SNV 0.897 1 24 hm5C_associated_SNPs_64965 0 0 1 0 2 SERPINF1 chr17:1678352 3'AG 1678352 Downstream 44bp
chr17 1678395 1678395 1 + G T UCEC 1678392 + 1678372 1678412 41 GACTCCAGAAAGACTTCCCTCGAGGATTTCTACTTGGATGA GACTCCAGAAAGACTTCCCTCGATGATTTCTACTTGGATGA < 41bp 0.750885292595794 0.352781994464319 0.8978681 0.1263834 prediction 0.501770585191587 Functional Loss - SERPINF1 ENSG00000132386 CDS Human protein_coding chr17:1678392 chr17:1678395 nonsynonymous SNV 0.897 1 24 hm5C_associated_SNPs_64965 0 0 1 0 2 SERPINF1 chr17:1678494 5'GT 1678494 Upstream 100bp
chr4 123301250 123301250 1 + A C LUAD 123301249 + 123301229 123301269 41 CTAGCAACAATCATTGGTTTCAGAGTTCGCAGGTCCCCAGC CTAGCAACAATCATTGGTTTCCGAGTTCGCAGGTCCCCAGC < 41bp 0.775675218635584 0.524790882189337 0.8441402 0.34218484 prediction 0.501768672892494 Functional Loss - ADAD1;ADAD1 ENSG00000164113;ENSG00000164113 exonic;splicing Human protein_coding chr4:123301249 chr4:123301250 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_64966 0 0 0 0 1 ADAD1 chr4:123301217 3'AG 123301217 Downstream 34bp
chr4 83375948 83375948 1 + G T LUAD 83375946 + 83375926 83375966 41 GAAGGTGTACATCTATTCCTCAGGGAGTGTGGAGGCACAGA GAAGGTGTACATCTATTCCTCATGGAGTGTGGAGGCACAGA < 41bp 0.881455075881148 0.630571726853369 0.82951355 0.1962181 prediction 0.501766698055556 Functional Loss - ENOPH1 ENSG00000145293 CDS Human protein_coding chr4:83375946 chr4:83375948 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_64967 0 0 1 0 2 ENOPH1 chr4:83375875 3'AG 83375875 Downstream 74bp
chr4 83375948 83375948 1 + G T LUAD 83375946 + 83375926 83375966 41 GAAGGTGTACATCTATTCCTCAGGGAGTGTGGAGGCACAGA GAAGGTGTACATCTATTCCTCATGGAGTGTGGAGGCACAGA < 41bp 0.881455075881148 0.630571726853369 0.82951355 0.1962181 prediction 0.501766698055556 Functional Loss - ENOPH1 ENSG00000145293 CDS Human protein_coding chr4:83375946 chr4:83375948 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_64967 0 0 1 0 2 ENOPH1 chr4:83376007 5'GT 83376007 Upstream 60bp
chr19 41515238 41515238 1 + G T CESC 41515235 + 41515215 41515255 41 GCCACAGTGTGGAGAAGCACCGTGAAACCCTGGACCCCAGC GCCACAGTGTGGAGAAGCACCGTTAAACCCTGGACCCCAGC < 41bp 0.750882091627114 0.355533825571733 0.5144967 0.54368126 prediction 0.501764183254228 Functional Loss - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41515235 chr19:41515238 stopgain 0.984 0 24 hm5C_associated_SNPs_64968 0 0 0 0 1 CYP2B6 chr19:41515300 5'GT 41515300 Upstream 63bp
chr19 10747165 10747165 1 + C T PRAD 10747163 + 10747143 10747183 41 GTGCTGGCGCTGGGCCAGGTCACGCTGGCCGGGGCCTTTGC GTGCTGGCGCTGGGCCAGGTCATGCTGGCCGGGGCCTTTGC < 41bp 0.781676415160195 0.530795099961314 0.31211758 0.28006628 prediction 0.501762630397762 Functional Loss - SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10747163 chr19:10747165 nonsynonymous SNV 0.839 4 23 hm5C_associated_SNPs_64969 0 0 1 0 1 SLC44A2 chr19:10747261 5'GT 10747261 Upstream 97bp
chr6 146673553 146673553 1 + G T UCEC 146673550 + 146673530 146673570 41 CCATCGACGGCAGCAAGCTGCTGGACTTCCTCATCAAGTCC CCATCGACGGCAGCAAGCTGCTGTACTTCCTCATCAAGTCC < 41bp 0.750878065751085 0.377933785962143 0.16401005 0.14894104 prediction 0.501756131502169 Functional Loss - GRM1 ENSG00000152822 CDS Human protein_coding chr6:146673550 chr6:146673553 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_64970 0 0 0 0 1 GRM1 chr6:146673632 5'GT 146673632 Upstream 80bp
chr11 20515515 20515515 1 + G T PRAD 20515512 + 20515492 20515532 41 TTTGAGAAGAATTGCCACAACAGGGTAAGTATCATGAATTA TTTGAGAAGAATTGCCACAACAGTGTAAGTATCATGAATTA < 41bp 0.750868712759823 0.380003032624918 0.39519304 0.22009143 prediction 0.501737425519645 Functional Loss - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20515512 chr11:20515515 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_64976 0 0 0 0 2 PRMT3 chr11:20515465 3'AG 20515465 Downstream 51bp
chr11 20515515 20515515 1 + G T PRAD 20515512 + 20515492 20515532 41 TTTGAGAAGAATTGCCACAACAGGGTAAGTATCATGAATTA TTTGAGAAGAATTGCCACAACAGTGTAAGTATCATGAATTA < 41bp 0.750868712759823 0.380003032624918 0.39519304 0.22009143 prediction 0.501737425519645 Functional Loss - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20515512 chr11:20515515 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_64976 0 0 0 0 2 PRMT3 chr11:20515515 3'AG 20515515 Downstream 1bp
chr8 86385979 86385979 1 + G T LUAD 86385977 + 86385957 86385997 41 TTGATTCAGTTTCACTTTCACTGGGGTTCACTTGATGGACA TTGATTCAGTTTCACTTTCACTTGGGTTCACTTGATGGACA < 41bp 0.878172625048358 0.627304422936801 0.4763093 0.15409252 prediction 0.501736404223114 Functional Loss - CA2 ENSG00000104267 CDS Human protein_coding chr8:86385977 chr8:86385979 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_64977 0 0 1 0 2 CA2 chr8:86385922 3'AG 86385922 Downstream 58bp
chr8 86385979 86385979 1 + G T LUAD 86385977 + 86385957 86385997 41 TTGATTCAGTTTCACTTTCACTGGGGTTCACTTGATGGACA TTGATTCAGTTTCACTTTCACTTGGGTTCACTTGATGGACA < 41bp 0.878172625048358 0.627304422936801 0.4763093 0.15409252 prediction 0.501736404223114 Functional Loss - CA2 ENSG00000104267 CDS Human protein_coding chr8:86385977 chr8:86385979 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_64977 0 0 1 0 2 CA2 chr8:86386040 5'GT 86386040 Upstream 62bp
chr6 147525742 147525742 1 + A T ESCA 147525738 + 147525718 147525758 41 CGTCCTCGGCGTCGCAGCAGCAACAGCAGCAGCATCCGCCT CGTCCTCGGCGTCGCAGCAGCAACTGCAGCAGCATCCGCCT < 41bp 0.750864146426373 0.44564145832864 0.22749376 0.3984205 prediction 0.501728292852746 Functional Loss - STXBP5 ENSG00000164506 CDS Human protein_coding chr6:147525738 chr6:147525742 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_64978 0 0 1 0 1 STXBP5 chr6:147525818 5'GT 147525818 Upstream 77bp
chr5 38258933 38258933 1 + G C rs12522205 38258929 + 38258909 38258949 41 TCGGACCCGGCGCGGTGTCGCTCCGAGCGGCCATCCGAAAA TCGGACCCGGCGCGGTGTCGCTCCCAGCGGCCATCCGAAAA < 41bp 0.750862228190524 0.460550967929883 0.6514867 0.12465021 prediction 0.501724456381049 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38258929 chr5:38258933 nonsynonymous SNV 0.057 2 25 hm5C_associated_SNPs_64980 0 0 0 0 1 EGFLAM chr5:38258953 5'GT 38258953 Upstream 21bp
chr19 49510571 49510571 1 + G C LUAD 49510567 + 49510547 49510587 41 CTCTCTGGCTAGGGAGGAGACGGAGATCATCGAAGGGGAGG CTCTCTGGCTAGGGAGGAGACGGACATCATCGAAGGGGAGG < 41bp 0.750853307445875 0.456688058582908 0.90625894 0.60722464 prediction 0.50170661489175 Functional Loss - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49510567 chr19:49510571 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_64984 0 0 1 0 2 RUVBL2 chr19:49510559 3'AG 49510559 Downstream 13bp
chr19 49510571 49510571 1 + G C LUAD 49510567 + 49510547 49510587 41 CTCTCTGGCTAGGGAGGAGACGGAGATCATCGAAGGGGAGG CTCTCTGGCTAGGGAGGAGACGGACATCATCGAAGGGGAGG < 41bp 0.750853307445875 0.456688058582908 0.90625894 0.60722464 prediction 0.50170661489175 Functional Loss - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49510567 chr19:49510571 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_64984 0 0 1 0 2 RUVBL2 chr19:49510625 5'GT 49510625 Upstream 55bp
chr16 81295827 81295827 1 + C T UCEC 81295825 + 81295805 81295845 41 AAGTGCGGAGAAGACTTCTACGCGACCTCAGAGACCAATTA AAGTGCGGAGAAGACTTCTACGTGACCTCAGAGACCAATTA < 41bp 0.821372971131536 0.570528984720232 0.19554543 0.1776889 prediction 0.501687972822609 Functional Loss - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81295825 chr16:81295827 nonsynonymous SNV 0.734 2 23 hm5C_associated_SNPs_64987 0 0 0 0 2 BCO1 chr16:81295741 3'AG 81295741 Downstream 87bp
chr16 81295827 81295827 1 + C T UCEC 81295825 + 81295805 81295845 41 AAGTGCGGAGAAGACTTCTACGCGACCTCAGAGACCAATTA AAGTGCGGAGAAGACTTCTACGTGACCTCAGAGACCAATTA < 41bp 0.821372971131536 0.570528984720232 0.19554543 0.1776889 prediction 0.501687972822609 Functional Loss - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81295825 chr16:81295827 nonsynonymous SNV 0.734 2 23 hm5C_associated_SNPs_64987 0 0 0 0 2 BCO1 chr16:81295888 5'GT 81295888 Upstream 62bp
chr1 18149579 18149579 1 + C T HNSC 18149577 + 18149557 18149597 41 CACGGCCGGCTGGAATGAGCCTCAGATGGTCTTCCCGAACA CACGGCCGGCTGGAATGAGCCTTAGATGGTCTTCCCGAACA < 41bp 0.750837200484336 0.471266002970694 0.2848922 0.23663327 prediction 0.501674400968671 Functional Loss - ACTL8 ENSG00000117148 CDS Human protein_coding chr1:18149577 chr1:18149579 stopgain 0.938 0 23 hm5C_associated_SNPs_64988 0 0 0 0 1 ACTL8 chr1:18149480 3'AG 18149480 Downstream 100bp
chr10 99995908 99995908 1 + G T rs182012480 99995906 + 99995886 99995926 41 GAGAAGCAGAGCTCAAGAAACTGCAAGAAGCCAGAGGTGAG GAGAAGCAGAGCTCAAGAAACTTCAAGAAGCCAGAGGTGAG < 41bp 0.750831417959377 0.432490977775201 0.8099171 0.16406566 prediction 0.501662835918753 Functional Loss - R3HCC1L ENSG00000166024 CDS Human protein_coding chr10:99995906 chr10:99995908 synonymous SNV . 0 23 hm5C_associated_SNPs_64989 0 0 1 0 1 R3HCC1L chr10:99995921 5'GT 99995921 Upstream 14bp
chr15 41023339 41023339 1 + C T UCEC 41023337 + 41023317 41023357 41 CCTGAAGCTGAAGCTATGTTCGCCATTAATGCAGATGGAGT CCTGAAGCTGAAGCTATGTTCGTCATTAATGCAGATGGAGT < 41bp 0.750830584147647 0.477640488211117 0.12264019 0.0921098 prediction 0.501661168295294 Functional Loss - RAD51 ENSG00000051180 CDS Human protein_coding chr15:41023337 chr15:41023339 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_64990 0 0 1 0 1 RAD51 chr15:41023253 3'AG 41023253 Downstream 87bp
chr19 17898512 17898512 1 + G T SARC 17898510 + 17898490 17898530 41 GGTTCTGGCCGCCTCTCTGCCAGCTGGGAGCCGCTCTCAGG GGTTCTGGCCGCCTCTCTGCCATCTGGGAGCCGCTCTCAGG < 41bp 0.750830581206609 0.403922006985598 0.8306276 0.4002253 prediction 0.501661162413217 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17898510 chr19:17898512 nonsynonymous SNV 0.981 3 23 hm5C_associated_SNPs_64991 0 0 0 0 1 FCHO1 chr19:17898491 3'AG 17898491 Downstream 22bp
chr12 113446923 113446923 1 + G T UCEC 113446921 + 113446901 113446941 41 CTTGGACCCAGCCGAACCCACAGGTGACGTGGGTGGAGGGG CTTGGACCCAGCCGAACCCACATGTGACGTGGGTGGAGGGG < 41bp 0.75082869443658 0.406368880236717 0.84363496 0.6116041 prediction 0.50165738887316 Functional Loss - OAS2 ENSG00000111335 CDS Human protein_coding chr12:113446921 chr12:113446923 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_64992 0 0 0 0 1 OAS2 chr12:113446892 3'AG 113446892 Downstream 32bp
chrX 37651241 37651241 1 + G T UCEC 37651238 + 37651218 37651258 41 TAATCCAAAGTGCTGCTCAACAAGAGTTCGAAGACAACTGG TAATCCAAAGTGCTGCTCAACAATAGTTCGAAGACAACTGG < 41bp 0.750823338987963 0.370736182930487 0.071704924 0.023768216 prediction 0.501646677975927 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37651238 chrX:37651241 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_64993 0 0 0 3 2 CYBB chrX:37651228 3'AG 37651228 Downstream 14bp
chrX 37651241 37651241 1 + G T UCEC 37651238 + 37651218 37651258 41 TAATCCAAAGTGCTGCTCAACAAGAGTTCGAAGACAACTGG TAATCCAAAGTGCTGCTCAACAATAGTTCGAAGACAACTGG < 41bp 0.750823338987963 0.370736182930487 0.071704924 0.023768216 prediction 0.501646677975927 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37651238 chrX:37651241 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_64993 0 0 0 3 2 CYBB chrX:37651312 5'GT 37651312 Upstream 72bp
chr6 35287713 35287713 1 + G T UCEC 35287711 + 35287691 35287731 41 AGCTGCAGCAGGAGATGGCACAGCAGAGCCGCTCCCTGCAG AGCTGCAGCAGGAGATGGCACATCAGAGCCGCTCCCTGCAG < 41bp 0.887886821098565 0.637063642545997 0.60128546 0.37537804 prediction 0.501646357105137 Functional Loss - DEF6 ENSG00000023892 CDS Human protein_coding chr6:35287711 chr6:35287713 nonsynonymous SNV 0.977 0 23 hm5C_associated_SNPs_64994 0 0 0 0 1 DEF6 chr6:35287794 5'GT 35287794 Upstream 82bp
chr11 64800008 64800008 1 + C T GBM 64800006 + 64799986 64800026 41 CGAGGAGTTCCCTGCTTTCCCCCGGGCCCAGGTGTTTGGTG CGAGGAGTTCCCTGCTTTCCCCTGGGCCCAGGTGTTTGGTG < 41bp 0.762344693685818 0.511522319984673 0.10916087 0.2795777 prediction 0.501644747402291 Functional Loss - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64800006 chr11:64800008 nonsynonymous SNV 0.778 4 23 hm5C_associated_SNPs_64995 0 0 0 0 1 SNX15 chr11:64800023 5'GT 64800023 Upstream 16bp
chr7 100799970 100799970 1 + C T rs77387752 100799968 + 100799948 100799988 41 AGGAACGGAAGAAGATGGTGCGCGAGCTCATGCAGGTTGTC AGGAACGGAAGAAGATGGTGCGTGAGCTCATGCAGGTTGTC < 41bp 0.799201873575355 0.548384197933457 0.38037568 0.22209167 prediction 0.501635351283796 Functional Loss - AP1S1 ENSG00000106367 CDS Human protein_coding chr7:100799968 chr7:100799970 synonymous SNV . 0 23 hm5C_associated_SNPs_64997 0 0 1 0 2 AP1S1 chr7:100799875 3'AG 100799875 Downstream 96bp
chr7 100799970 100799970 1 + C T rs77387752 100799968 + 100799948 100799988 41 AGGAACGGAAGAAGATGGTGCGCGAGCTCATGCAGGTTGTC AGGAACGGAAGAAGATGGTGCGTGAGCTCATGCAGGTTGTC < 41bp 0.799201873575355 0.548384197933457 0.38037568 0.22209167 prediction 0.501635351283796 Functional Loss - AP1S1 ENSG00000106367 CDS Human protein_coding chr7:100799968 chr7:100799970 synonymous SNV . 0 23 hm5C_associated_SNPs_64997 0 0 1 0 2 AP1S1 chr7:100800053 5'GT 100800053 Upstream 84bp
chr2 234894426 234894426 1 + C T GBM 234894424 + 234894404 234894444 41 AGCACAACCTGCCCCGGTTCCCCGAGTGGATCACCATCCCC AGCACAACCTGCCCCGGTTCCCTGAGTGGATCACCATCCCC < 41bp 0.750804413357725 0.472839301009972 0.8207556 0.75888145 prediction 0.50160882671545 Functional Loss - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234894424 chr2:234894426 synonymous SNV . 0 23 hm5C_associated_SNPs_65001 0 0 0 0 2 TRPM8 chr2:234894332 3'AG 234894332 Downstream 95bp
chr2 234894426 234894426 1 + C T GBM 234894424 + 234894404 234894444 41 AGCACAACCTGCCCCGGTTCCCCGAGTGGATCACCATCCCC AGCACAACCTGCCCCGGTTCCCTGAGTGGATCACCATCCCC < 41bp 0.750804413357725 0.472839301009972 0.8207556 0.75888145 prediction 0.50160882671545 Functional Loss - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234894424 chr2:234894426 synonymous SNV . 0 23 hm5C_associated_SNPs_65001 0 0 0 0 2 TRPM8 chr2:234894509 5'GT 234894509 Upstream 84bp
chr7 18630022 18630022 1 + G T LUAD 18630019 + 18629999 18630039 41 TCCTAGAAAAGGAGCAGAAACTGGAGCAGCAGAGGCAAGAA TCCTAGAAAAGGAGCAGAAACTGTAGCAGCAGAGGCAAGAA < 41bp 0.82453461093174 0.573735608660717 0.82957315 0.39663625 prediction 0.501598004542045 Functional Loss - HDAC9 ENSG00000048052 CDS Human protein_coding chr7:18630019 chr7:18630022 stopgain 1.000 1 24 hm5C_associated_SNPs_65002 0 0 0 0 2 HDAC9 chr7:18629959 3'AG 18629959 Downstream 64bp
chr7 18630022 18630022 1 + G T LUAD 18630019 + 18629999 18630039 41 TCCTAGAAAAGGAGCAGAAACTGGAGCAGCAGAGGCAAGAA TCCTAGAAAAGGAGCAGAAACTGTAGCAGCAGAGGCAAGAA < 41bp 0.82453461093174 0.573735608660717 0.82957315 0.39663625 prediction 0.501598004542045 Functional Loss - HDAC9 ENSG00000048052 CDS Human protein_coding chr7:18630019 chr7:18630022 stopgain 1.000 1 24 hm5C_associated_SNPs_65002 0 0 0 0 2 HDAC9 chr7:18630109 5'GT 18630109 Upstream 88bp
chr1 47610403 47610403 1 + C T SKCM 47610401 + 47610381 47610421 41 GGCCTCCTGGGTGATGGAGCCTCCATCACCTGGTGAGTGAG GGCCTCCTGGGTGATGGAGCCTTCATCACCTGGTGAGTGAG < 41bp 0.750798684673636 0.478568033803666 0.96275747 0.06351 prediction 0.501597369347271 Functional Loss - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47610401 chr1:47610403 nonsynonymous SNV 0.567 2 23 hm5C_associated_SNPs_65003 0 0 0 0 1 CYP4A22 chr1:47610412 5'GT 47610412 Upstream 10bp
chr11 63137888 63137888 1 + G T LUSC 63137885 + 63137865 63137905 41 ATGGAGCCCTGTGTGGATGGCTGGGTGTATGACAGAATCTC ATGGAGCCCTGTGTGGATGGCTGTGTGTATGACAGAATCTC < 41bp 0.750796879253912 0.359046698851061 0.47354147 0.2003425 prediction 0.501593758507825 Functional Loss - SLC22A9 ENSG00000149742 CDS Human protein_coding chr11:63137885 chr11:63137888 nonsynonymous SNV 0.931 5 24 hm5C_associated_SNPs_65004 0 0 0 0 1 SLC22A9 chr11:63137930 5'GT 63137930 Upstream 43bp
chr8 104064992 104064992 1 + C T GBM 104064990 + 104064970 104065010 41 GATTGATAATGACCTGAAATCTCGAGCATCTGCATACAATA GATTGATAATGACCTGAAATCTTGAGCATCTGCATACAATA < 41bp 0.836458625388994 0.585662188326876 0.57382435 0.09276748 prediction 0.501592874124235 Functional Loss - ATP6V1C1 ENSG00000155097 CDS Human protein_coding chr8:104064990 chr8:104064992 stopgain 0.997 1 23 hm5C_associated_SNPs_65005 0 0 1 0 2 ATP6V1C1 chr8:104064959 3'AG 104064959 Downstream 34bp
chr8 104064992 104064992 1 + C T GBM 104064990 + 104064970 104065010 41 GATTGATAATGACCTGAAATCTCGAGCATCTGCATACAATA GATTGATAATGACCTGAAATCTTGAGCATCTGCATACAATA < 41bp 0.836458625388994 0.585662188326876 0.57382435 0.09276748 prediction 0.501592874124235 Functional Loss - ATP6V1C1 ENSG00000155097 CDS Human protein_coding chr8:104064990 chr8:104064992 stopgain 0.997 1 23 hm5C_associated_SNPs_65005 0 0 1 0 2 ATP6V1C1 chr8:104065050 5'GT 104065050 Upstream 59bp
chrX 70514332 70514332 1 + C T UCEC 70514330 + 70514310 70514350 41 GTTCTCAGGGAAGCCAGCTGCTCGGAAAGCTCTGGACAGAT GTTCTCAGGGAAGCCAGCTGCTTGGAAAGCTCTGGACAGAT < 41bp 0.819159214329642 0.568369247850879 0.7592574 0.5966357 prediction 0.501579932957525 Functional Loss - NONO ENSG00000147140 CDS Human protein_coding chrX:70514330 chrX:70514332 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_65006 0 0 1 0 1 NONO chrX:70514378 5'GT 70514378 Upstream 47bp
chr1 166818200 166818200 1 + T C SARC 166818199 + 166818179 166818219 41 TGAAGAATCTGACGTAAAGCCTCCAGACTGGCCAAACCCAA TGAAGAATCTGACGTAAAGCCCCCAGACTGGCCAAACCCAA < 41bp 0.750781971086265 0.490771804735813 0.95491946 0.09668055 prediction 0.50156394217253 Functional Loss - POGK ENSG00000143157 CDS Human protein_coding chr1:166818199 chr1:166818200 synonymous SNV . 0 22 hm5C_associated_SNPs_65007 0 0 1 0 1 POGK chr1:166818175 3'AG 166818175 Downstream 26bp
chr5 148746985 148746985 1 + G T CESC 148746982 + 148746962 148747002 41 CTGTGGAAGGAGGCAATAAGCTGGTTTGTTCCGGTTTGCTG CTGTGGAAGGAGGCAATAAGCTGTTTTGTTCCGGTTTGCTG < 41bp 0.917790547782959 0.667039846112818 0.4279885 0.25055426 prediction 0.501501403340283 Functional Loss - PCYOX1L ENSG00000145882 CDS Human protein_coding chr5:148746982 chr5:148746985 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_65011 0 0 0 0 2 PCYOX1L chr5:148746923 3'AG 148746923 Downstream 63bp
chr5 148746985 148746985 1 + G T CESC 148746982 + 148746962 148747002 41 CTGTGGAAGGAGGCAATAAGCTGGTTTGTTCCGGTTTGCTG CTGTGGAAGGAGGCAATAAGCTGTTTTGTTCCGGTTTGCTG < 41bp 0.917790547782959 0.667039846112818 0.4279885 0.25055426 prediction 0.501501403340283 Functional Loss - PCYOX1L ENSG00000145882 CDS Human protein_coding chr5:148746982 chr5:148746985 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_65011 0 0 0 0 2 PCYOX1L chr5:148747063 5'GT 148747063 Upstream 79bp
chr10 106160563 106160563 1 + G T UCEC 106160561 + 106160541 106160581 41 AAGGGGAGAGCCAGTACAACCAGAGGTTGGAGGACATGAGA AAGGGGAGAGCCAGTACAACCATAGGTTGGAGGACATGAGA < 41bp 0.750750180164793 0.400863395568017 0.9130221 0.542796 prediction 0.501500360329587 Functional Loss - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106160561 chr10:106160563 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_65012 0 0 0 0 1 CFAP58 chr10:106160661 5'GT 106160661 Upstream 99bp
chr12 20786672 20786672 1 + G T SARC 20786670 + 20786650 20786690 41 GGAATCCTGCTGATGAGCCCCTGGAGAGAAGTGGGGTAGCC GGAATCCTGCTGATGAGCCCCTTGAGAGAAGTGGGGTAGCC < 41bp 0.750749908934665 0.414584526187329 0.20517871 0.052314818 prediction 0.50149981786933 Functional Loss - PDE3A ENSG00000172572 CDS Human protein_coding chr12:20786670 chr12:20786672 synonymous SNV . 0 23 hm5C_associated_SNPs_65013 0 0 1 0 2 PDE3A chr12:20786627 3'AG 20786627 Downstream 46bp
chr12 20786672 20786672 1 + G T SARC 20786670 + 20786650 20786690 41 GGAATCCTGCTGATGAGCCCCTGGAGAGAAGTGGGGTAGCC GGAATCCTGCTGATGAGCCCCTTGAGAGAAGTGGGGTAGCC < 41bp 0.750749908934665 0.414584526187329 0.20517871 0.052314818 prediction 0.50149981786933 Functional Loss - PDE3A ENSG00000172572 CDS Human protein_coding chr12:20786670 chr12:20786672 synonymous SNV . 0 23 hm5C_associated_SNPs_65013 0 0 1 0 2 PDE3A chr12:20786712 5'GT 20786712 Upstream 41bp
chr12 108589971 108589971 1 + G T LUAD 108589969 + 108589949 108589989 41 GCCCTCAAGGGGAGGGTTGTCCGGGAGAAGGAGGAAGAGCG GCCCTCAAGGGGAGGGTTGTCCTGGAGAAGGAGGAAGAGCG < 41bp 0.750748100942266 0.386454587574955 0.9180018 0.47841313 prediction 0.501496201884531 Functional Loss - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108589969 chr12:108589971 nonsynonymous SNV 0.992 0 23 hm5C_associated_SNPs_65014 0 0 0 0 1 WSCD2 chr12:108589991 5'GT 108589991 Upstream 21bp
chr9 110068723 110068723 1 + G T UCEC 110068721 + 110068701 110068741 41 GTCAGCTCCTGCCAGCACTACAGCAGTTACTTCCTCCACCA GTCAGCTCCTGCCAGCACTACATCAGTTACTTCCTCCACCA < 41bp 0.88285803831682 0.632125224817283 0.39600033 0.07687956 prediction 0.501465626999074 Functional Loss - RAD23B ENSG00000119318 CDS Human protein_coding chr9:110068721 chr9:110068723 nonsynonymous SNV 0.030 0 23 hm5C_associated_SNPs_65018 0 0 1 0 1 RAD23B chr9:110068660 3'AG 110068660 Downstream 64bp
chr11 57559064 57559064 1 + G T LUSC 57559061 + 57559041 57559081 41 GAGGAGGAACGGCGCCACGTCTCGGCGCAGCTGGAACGCGT GAGGAGGAACGGCGCCACGTCTCTGCGCAGCTGGAACGCGT < 41bp 0.901106496231812 0.650378428642138 0.32584992 0.2057276 prediction 0.501456135179349 Functional Loss - CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57559061 chr11:57559064 synonymous SNV . 0 24 hm5C_associated_SNPs_65020 0 0 1 0 2 CTNND1 chr11:57558966 3'AG 57558966 Downstream 99bp
chr11 57559064 57559064 1 + G T LUSC 57559061 + 57559041 57559081 41 GAGGAGGAACGGCGCCACGTCTCGGCGCAGCTGGAACGCGT GAGGAGGAACGGCGCCACGTCTCTGCGCAGCTGGAACGCGT < 41bp 0.901106496231812 0.650378428642138 0.32584992 0.2057276 prediction 0.501456135179349 Functional Loss - CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57559061 chr11:57559064 synonymous SNV . 0 24 hm5C_associated_SNPs_65020 0 0 1 0 2 CTNND1 chr11:57559145 5'GT 57559145 Upstream 82bp
chr1 43787144 43787144 1 + C T SKCM 43787142 + 43787122 43787162 41 GGGCTACCGCATGGAGCAGCCTCGAAACTGTGACGATGAAG GGGCTACCGCATGGAGCAGCCTTGAAACTGTGACGATGAAG < 41bp 0.750716201712799 0.469767581847707 0.87610435 0.15207437 prediction 0.501432403425599 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43787142 chr1:43787144 stopgain 1.000 0 23 hm5C_associated_SNPs_65022 0 0 0 0 1 TIE1 chr1:43787067 3'AG 43787067 Downstream 78bp
chr8 35425721 35425721 1 + G C LUAD 35425717 + 35425697 35425737 41 AGTGTGTGGCGTGGAGCCACCTGGGTACCTCCAAGAGCAGG AGTGTGTGGCGTGGAGCCACCTGGCTACCTCCAAGAGCAGG < 41bp 0.750707444190463 0.475020847509934 0.5707203 0.07132551 prediction 0.501414888380926 Functional Loss - UNC5D ENSG00000156687 CDS Human protein_coding chr8:35425717 chr8:35425721 nonsynonymous SNV 0.981 4 25 hm5C_associated_SNPs_65024 0 0 0 0 1 UNC5D chr8:35425759 5'GT 35425759 Upstream 39bp
chr11 112064369 112064369 1 + A C rs79045562 112064365 + 112064345 112064385 41 CTGGCTCTCCCGGATCCATGCAAGAATGTTTTTGAACGTTT CTGGCTCTCCCGGATCCATGCAAGCATGTTTTTGAACGTTT < 41bp 0.75070561526828 0.340670191370639 0.37299624 0.30774152 prediction 0.501411230536561 Functional Loss - BCO2 ENSG00000197580;ENSG00000272790 CDS Human other chr11:112064365 chr11:112064369 nonsynonymous SNV 0.984 5 25 hm5C_associated_SNPs_65025 0 0 0 0 1 BCO2 chr11:112064420 5'GT 112064420 Upstream 52bp
chrX 130220600 130220600 1 + C T BRCA 130220598 + 130220578 130220618 41 AGTGGAAACCTCTGCTGAAGCCCGGGCTGCTGTCCTTGCTC AGTGGAAACCTCTGCTGAAGCCTGGGCTGCTGTCCTTGCTC < 41bp 0.776150030373825 0.525447156969844 0.6524055 0.5784073 prediction 0.501405746807963 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220598 chrX:130220600 nonsynonymous SNV 0.703 1 23 hm5C_associated_SNPs_65026 0 0 0 0 2 ARHGAP36 chrX:130220533 3'AG 130220533 Downstream 68bp
chrX 130220600 130220600 1 + C T BRCA 130220598 + 130220578 130220618 41 AGTGGAAACCTCTGCTGAAGCCCGGGCTGCTGTCCTTGCTC AGTGGAAACCTCTGCTGAAGCCTGGGCTGCTGTCCTTGCTC < 41bp 0.776150030373825 0.525447156969844 0.6524055 0.5784073 prediction 0.501405746807963 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220598 chrX:130220600 nonsynonymous SNV 0.703 1 23 hm5C_associated_SNPs_65026 0 0 0 0 2 ARHGAP36 chrX:130220639 5'GT 130220639 Upstream 40bp
chr6 80745093 80745093 1 + G T LUSC 80745091 + 80745071 80745111 41 CCATGGGAACGCAAGAGTTACTGGAAAAATATGTTAGAGGC CCATGGGAACGCAAGAGTTACTTGAAAAATATGTTAGAGGC < 41bp 0.852281833628553 0.60158719746379 0.44225043 0.3090453 prediction 0.501389272329527 Functional Loss - TTK ENSG00000112742 CDS Human protein_coding chr6:80745091 chr6:80745093 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_65031 0 0 1 0 1 TTK chr6:80745134 5'GT 80745134 Upstream 42bp
chr6 26446006 26446006 1 + G T UCEC 26446004 + 26445984 26446024 41 CCATCTGGAGTGCAGGTCCACTGGCTGGTACCCCCAACCCC CCATCTGGAGTGCAGGTCCACTTGCTGGTACCCCCAACCCC < 41bp 0.750692416638969 0.395762922035109 0.22387671 0.12879205 prediction 0.501384833277938 Functional Loss - BTN3A3 ENSG00000111801 CDS Human protein_coding chr6:26446004 chr6:26446006 nonsynonymous SNV 0.006 3 23 hm5C_associated_SNPs_65032 0 0 0 0 1 BTN3A3 chr6:26445932 3'AG 26445932 Downstream 75bp
chr19 49464129 49464129 1 + C T BLCA 49464127 + 49464107 49464147 41 TGGGCTGGACATTGGACTTCCTCCGGGAGCGGCTGTTGGGC TGGGCTGGACATTGGACTTCCTTCGGGAGCGGCTGTTGGGC < 41bp 0.750686302831712 0.475576477939575 0.301431 0.19746462 prediction 0.501372605663424 Functional Loss - BAX ENSG00000087088 CDS Human protein_coding chr19:49464127 chr19:49464129 synonymous SNV . 0 23 hm5C_associated_SNPs_65033 0 0 1 0 2 BAX chr19:49464067 3'AG 49464067 Downstream 63bp
chr19 49464129 49464129 1 + C T BLCA 49464127 + 49464107 49464147 41 TGGGCTGGACATTGGACTTCCTCCGGGAGCGGCTGTTGGGC TGGGCTGGACATTGGACTTCCTTCGGGAGCGGCTGTTGGGC < 41bp 0.750686302831712 0.475576477939575 0.301431 0.19746462 prediction 0.501372605663424 Functional Loss - BAX ENSG00000087088 CDS Human protein_coding chr19:49464127 chr19:49464129 synonymous SNV . 0 23 hm5C_associated_SNPs_65033 0 0 1 0 2 BAX chr19:49464171 5'GT 49464171 Upstream 43bp
chr19 49464131 49464131 1 + G C LUSC 49464127 + 49464107 49464147 41 TGGGCTGGACATTGGACTTCCTCCGGGAGCGGCTGTTGGGC TGGGCTGGACATTGGACTTCCTCCCGGAGCGGCTGTTGGGC < 41bp 0.750686302831712 0.471996773066955 0.301431 0.11038357 prediction 0.501372605663424 Functional Loss - BAX ENSG00000087088 CDS Human protein_coding chr19:49464127 chr19:49464131 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_65034 0 0 1 0 2 BAX chr19:49464067 3'AG 49464067 Downstream 65bp
chr19 49464131 49464131 1 + G C LUSC 49464127 + 49464107 49464147 41 TGGGCTGGACATTGGACTTCCTCCGGGAGCGGCTGTTGGGC TGGGCTGGACATTGGACTTCCTCCCGGAGCGGCTGTTGGGC < 41bp 0.750686302831712 0.471996773066955 0.301431 0.11038357 prediction 0.501372605663424 Functional Loss - BAX ENSG00000087088 CDS Human protein_coding chr19:49464127 chr19:49464131 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_65034 0 0 1 0 2 BAX chr19:49464171 5'GT 49464171 Upstream 41bp
chr14 24527032 24527032 1 + C T ESCA 24527030 + 24527010 24527050 41 AGCTTCTCGGTGCCCTGCTCCACGGCTGCTGCTCCCACCTC AGCTTCTCGGTGCCCTGCTCCATGGCTGCTGCTCCCACCTC < 41bp 0.750672454872749 0.49131107325623 0.43037006 0.14295769 prediction 0.501344909745497 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24527030 chr14:24527032 synonymous SNV . 0 23 hm5C_associated_SNPs_65039 0 0 0 0 2 CARMIL3 chr14:24527012 3'AG 24527012 Downstream 21bp
chr14 24527032 24527032 1 + C T ESCA 24527030 + 24527010 24527050 41 AGCTTCTCGGTGCCCTGCTCCACGGCTGCTGCTCCCACCTC AGCTTCTCGGTGCCCTGCTCCATGGCTGCTGCTCCCACCTC < 41bp 0.750672454872749 0.49131107325623 0.43037006 0.14295769 prediction 0.501344909745497 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24527030 chr14:24527032 synonymous SNV . 0 23 hm5C_associated_SNPs_65039 0 0 0 0 2 CARMIL3 chr14:24527088 5'GT 24527088 Upstream 57bp
chr8 87440021 87440021 1 + A C LUAD 87440017 + 87439997 87440037 41 ACCAATTGCAGGGAGCTATGCAACAGTTTAACCAACGATAC ACCAATTGCAGGGAGCTATGCAACCGTTTAACCAACGATAC < 41bp 0.750664258929253 0.340686079575396 0.08934036 0.08753803 prediction 0.501328517858506 Functional Loss - WWP1 ENSG00000123124 CDS Human protein_coding chr8:87440017 chr8:87440021 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_65043 0 0 1 0 1 WWP1 chr8:87440046 5'GT 87440046 Upstream 26bp
chr7 150767073 150767073 1 + G T LUAD 150767070 + 150767050 150767090 41 TCTGGACCAGCAGACCCTGCCCGGAGTGGCCCACCAGGTGG TCTGGACCAGCAGACCCTGCCCGTAGTGGCCCACCAGGTGG < 41bp 0.750649249829247 0.34808908921469 0.8154757 0.15051353 prediction 0.501298499658493 Functional Loss - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150767070 chr7:150767073 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_65047 0 0 1 0 2 SLC4A2 chr7:150767034 3'AG 150767034 Downstream 40bp
chr7 150767073 150767073 1 + G T LUAD 150767070 + 150767050 150767090 41 TCTGGACCAGCAGACCCTGCCCGGAGTGGCCCACCAGGTGG TCTGGACCAGCAGACCCTGCCCGTAGTGGCCCACCAGGTGG < 41bp 0.750649249829247 0.34808908921469 0.8154757 0.15051353 prediction 0.501298499658493 Functional Loss - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150767070 chr7:150767073 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_65047 0 0 1 0 2 SLC4A2 chr7:150767169 5'GT 150767169 Upstream 97bp
chr20 44639150 44639150 1 + C T STAD 44639148 + 44639128 44639168 41 AAACTACTCGGAAGACTTGCCGCGGGCGGTGATTGACGACG AAACTACTCGGAAGACTTGCCGTGGGCGGTGATTGACGACG < 41bp 0.775685862108532 0.525037353516084 0.8724197 0.8645274 prediction 0.501297017184897 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44639148 chr20:44639150 nonsynonymous SNV 0.128 3 23 hm5C_associated_SNPs_65048 0 0 0 0 1 MMP9 chr20:44639122 3'AG 44639122 Downstream 29bp
chr1 198691572 198691572 1 + G T LUAD 198691570 + 198691550 198691590 41 TTTTCACAATGGAGACTATCCTGGAGAACCCTTTATTTTAC TTTTCACAATGGAGACTATCCTTGAGAACCCTTTATTTTAC < 41bp 0.750631205046556 0.438946348922252 0.18690223 0.008580387 prediction 0.501262410093112 Functional Loss - PTPRC ENSG00000081237 CDS Human protein_coding chr1:198691570 chr1:198691572 stopgain 0.018 0 23 hm5C_associated_SNPs_65052 0 0 0 0 2 PTPRC chr1:198691545 3'AG 198691545 Downstream 28bp
chr1 198691572 198691572 1 + G T LUAD 198691570 + 198691550 198691590 41 TTTTCACAATGGAGACTATCCTGGAGAACCCTTTATTTTAC TTTTCACAATGGAGACTATCCTTGAGAACCCTTTATTTTAC < 41bp 0.750631205046556 0.438946348922252 0.18690223 0.008580387 prediction 0.501262410093112 Functional Loss - PTPRC ENSG00000081237 CDS Human protein_coding chr1:198691570 chr1:198691572 stopgain 0.018 0 23 hm5C_associated_SNPs_65052 0 0 0 0 2 PTPRC chr1:198691605 5'GT 198691605 Upstream 34bp
chr2 79254204 79254204 1 + C T rs147588385 79254202 + 79254182 79254222 41 CTGGAAAACTGGTGTCTGTGCTCAGTGGGGCTGAGGGATCC CTGGAAAACTGGTGTCTGTGCTTAGTGGGGCTGAGGGATCC < 41bp 0.796474806656352 0.545844909806787 0.28519392 0.2542443 prediction 0.501259793699131 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79254202 chr2:79254204 synonymous SNV . 0 23 hm5C_associated_SNPs_65053 0 0 0 0 2 REG3G chr2:79254160 3'AG 79254160 Downstream 45bp
chr2 79254204 79254204 1 + C T rs147588385 79254202 + 79254182 79254222 41 CTGGAAAACTGGTGTCTGTGCTCAGTGGGGCTGAGGGATCC CTGGAAAACTGGTGTCTGTGCTTAGTGGGGCTGAGGGATCC < 41bp 0.796474806656352 0.545844909806787 0.28519392 0.2542443 prediction 0.501259793699131 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79254202 chr2:79254204 synonymous SNV . 0 23 hm5C_associated_SNPs_65053 0 0 0 0 2 REG3G chr2:79254297 5'GT 79254297 Upstream 94bp
chr16 81076065 81076065 1 + C T STAD 81076063 + 81076043 81076083 41 CTCACATCTACCGAACTGGGCACGAGATACCTGCAGAACAC CTCACATCTACCGAACTGGGCATGAGATACCTGCAGAACAC < 41bp 0.797993651744564 0.547370847077138 0.3210153 0.30425817 prediction 0.501245609334853 Functional Loss - ATMIN ENSG00000166454 CDS Human protein_coding chr16:81076063 chr16:81076065 synonymous SNV . 0 23 hm5C_associated_SNPs_65054 0 0 1 0 1 ATMIN chr16:81076085 5'GT 81076085 Upstream 21bp
chr17 65014374 65014374 1 + C T BLCA 65014372 + 65014352 65014392 41 AATGACTACGACCACGACAGCTCGGAGTACCTCCTCCGTGA AATGACTACGACCACGACAGCTTGGAGTACCTCCTCCGTGA < 41bp 0.798641238501943 0.548020987202742 0.73990494 0.581286 prediction 0.501240502598402 Functional Loss - CACNG4 ENSG00000075461 CDS Human protein_coding chr17:65014372 chr17:65014374 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_65055 0 0 0 0 2 CACNG4 chr17:65014305 3'AG 65014305 Downstream 70bp
chr17 65014374 65014374 1 + C T BLCA 65014372 + 65014352 65014392 41 AATGACTACGACCACGACAGCTCGGAGTACCTCCTCCGTGA AATGACTACGACCACGACAGCTTGGAGTACCTCCTCCGTGA < 41bp 0.798641238501943 0.548020987202742 0.73990494 0.581286 prediction 0.501240502598402 Functional Loss - CACNG4 ENSG00000075461 CDS Human protein_coding chr17:65014372 chr17:65014374 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_65055 0 0 0 0 2 CACNG4 chr17:65014388 5'GT 65014388 Upstream 15bp
chrX 151818256 151818256 1 + C T LGG 151818254 + 151818234 151818274 41 TTCTGGGATGACAATGGGAACGCCATCCACATGACTGAGGA TTCTGGGATGACAATGGGAACGTCATCCACATGACTGAGGA < 41bp 0.750619541693154 0.467758663241098 0.19470897 0.12760642 prediction 0.501239083386309 Functional Loss - GABRQ ENSG00000147402 CDS Human other chrX:151818254 chrX:151818256 nonsynonymous SNV 0.004 2 23 hm5C_associated_SNPs_65056 0 0 0 0 2 GABRQ chrX:151818205 3'AG 151818205 Downstream 52bp
chrX 151818256 151818256 1 + C T LGG 151818254 + 151818234 151818274 41 TTCTGGGATGACAATGGGAACGCCATCCACATGACTGAGGA TTCTGGGATGACAATGGGAACGTCATCCACATGACTGAGGA < 41bp 0.750619541693154 0.467758663241098 0.19470897 0.12760642 prediction 0.501239083386309 Functional Loss - GABRQ ENSG00000147402 CDS Human other chrX:151818254 chrX:151818256 nonsynonymous SNV 0.004 2 23 hm5C_associated_SNPs_65056 0 0 0 0 2 GABRQ chrX:151818342 5'GT 151818342 Upstream 87bp
chr8 26481822 26481822 1 + C T rs139123217 26481820 + 26481800 26481840 41 TGGAAGCGCTTGTGAAGGATCACGGTAGGTTGCACTGAGTC TGGAAGCGCTTGTGAAGGATCATGGTAGGTTGCACTGAGTC < 41bp 0.791719761790071 0.541105308301605 0.72867185 0.8269942 prediction 0.501228906976931 Functional Loss - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26481820 chr8:26481822 synonymous SNV . 0 23 hm5C_associated_SNPs_65058 0 0 1 0 1 DPYSL2 chr8:26481823 5'GT 26481823 Upstream 2bp
chr19 50295289 50295289 1 + C T UCEC 50295287 + 50295267 50295307 41 GCCCATGGGCGAGTGGACGGCGCGTGTGGTACACCTGCTCA GCCCATGGGCGAGTGGACGGCGTGTGTGGTACACCTGCTCA < 41bp 0.750610786550002 0.497241012352578 0.4442822 0.35259998 prediction 0.501221573100005 Functional Loss - AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50295287 chr19:50295289 nonsynonymous SNV 0.053 4 23 hm5C_associated_SNPs_65059 0 0 1 0 2 AP2A1 chr19:50295192 3'AG 50295192 Downstream 98bp
chr19 50295289 50295289 1 + C T UCEC 50295287 + 50295267 50295307 41 GCCCATGGGCGAGTGGACGGCGCGTGTGGTACACCTGCTCA GCCCATGGGCGAGTGGACGGCGTGTGTGGTACACCTGCTCA < 41bp 0.750610786550002 0.497241012352578 0.4442822 0.35259998 prediction 0.501221573100005 Functional Loss - AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50295287 chr19:50295289 nonsynonymous SNV 0.053 4 23 hm5C_associated_SNPs_65059 0 0 1 0 2 AP2A1 chr19:50295321 5'GT 50295321 Upstream 33bp
chr20 2375922 2375922 1 + A T LUSC 2375918 + 2375898 2375938 41 GCGGGGTGAGGGCTGGACAGCAGCAAGGGAGGCTCAGATGG GCGGGGTGAGGGCTGGACAGCAGCTAGGGAGGCTCAGATGG < 41bp 0.865515537748539 0.614913018485984 0.1759372 0.13505718 prediction 0.501205038525109 Functional Loss - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2375918 chr20:2375922 synonymous SNV . 0 25 hm5C_associated_SNPs_65061 0 0 0 0 1 TGM6 chr20:2375840 3'AG 2375840 Downstream 83bp
chr18 63530070 63530070 1 + G T LUAD 63530068 + 63530048 63530088 41 GCTGACGGCGTAGCCCAGACCTGCAATGCAGAGGCCTATGT GCTGACGGCGTAGCCCAGACCTTCAATGCAGAGGCCTATGT < 41bp 0.874680709827392 0.624079682621098 0.17937553 0.419394 prediction 0.501202054412587 Functional Loss - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63530068 chr18:63530070 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_65062 0 0 0 0 1 CDH7 chr18:63530153 5'GT 63530153 Upstream 84bp
chr14 52186847 52186847 1 + C T PRAD 52186845 + 52186825 52186865 41 GGACCAGCTGGAAAAACGGTCGCGGGCCAGCGGGAGCAGTG GGACCAGCTGGAAAAACGGTCGTGGGCCAGCGGGAGCAGTG < 41bp 0.794625304731226 0.544025159496155 0.299323 0.36040238 prediction 0.501200290470142 Functional Loss - FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52186845 chr14:52186847 nonsynonymous SNV 0.454 4 23 hm5C_associated_SNPs_65063 0 0 1 0 1 FRMD6 chr14:52186773 3'AG 52186773 Downstream 75bp
chr9 35660849 35660849 1 + G T LGG 35660847 + 35660827 35660867 41 GGACAAGGATATGGAGGCTTCAGAACCAGGTGAAGGCTCGG GGACAAGGATATGGAGGCTTCATAACCAGGTGAAGGCTCGG < 41bp 0.750588234026007 0.425366544924082 0.08341807 0.0063960254 prediction 0.501176468052014 Functional Loss - CCDC107 ENSG00000159884 CDS Human protein_coding chr9:35660847 chr9:35660849 stopgain 0.977 0 23 hm5C_associated_SNPs_65065 0 0 1 1 3 CCDC107 chr9:35660763 3'AG 35660763 Downstream 87bp
chr9 35660849 35660849 1 + G T LGG 35660847 + 35660827 35660867 41 GGACAAGGATATGGAGGCTTCAGAACCAGGTGAAGGCTCGG GGACAAGGATATGGAGGCTTCATAACCAGGTGAAGGCTCGG < 41bp 0.750588234026007 0.425366544924082 0.08341807 0.0063960254 prediction 0.501176468052014 Functional Loss - CCDC107 ENSG00000159884 CDS Human protein_coding chr9:35660847 chr9:35660849 stopgain 0.977 0 23 hm5C_associated_SNPs_65065 0 0 1 1 3 CCDC107 chr9:35660771 3'AG 35660771 Downstream 79bp
chr9 35660849 35660849 1 + G T LGG 35660847 + 35660827 35660867 41 GGACAAGGATATGGAGGCTTCAGAACCAGGTGAAGGCTCGG GGACAAGGATATGGAGGCTTCATAACCAGGTGAAGGCTCGG < 41bp 0.750588234026007 0.425366544924082 0.08341807 0.0063960254 prediction 0.501176468052014 Functional Loss - CCDC107 ENSG00000159884 CDS Human protein_coding chr9:35660847 chr9:35660849 stopgain 0.977 0 23 hm5C_associated_SNPs_65065 0 0 1 1 3 CCDC107 chr9:35660855 5'GT 35660855 Upstream 7bp
chr19 47870294 47870294 1 + A C LUSC 47870293 + 47870273 47870313 41 CCCCTTCATCGAGCCCCCACCACCAGCCAGCCTGGAAACCG CCCCTTCATCGAGCCCCCACCCCCAGCCAGCCTGGAAACCG < 41bp 0.768887273750175 0.518299354139459 0.12901568 0.15911368 prediction 0.501175839221432 Functional Loss - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47870293 chr19:47870294 synonymous SNV . 0 22 hm5C_associated_SNPs_65066 0 0 0 0 1 DHX34 chr19:47870238 3'AG 47870238 Downstream 57bp
chr10 124909106 124909106 1 + G C COAD 124909102 + 124909082 124909122 41 TCAGGTACCCCCAAGGGCAGCGGAGGCTCGGGCCCGGGCGG TCAGGTACCCCCAAGGGCAGCGGACGCTCGGGCCCGGGCGG < 41bp 0.8342543224536 0.583675818669316 0.94107485 0.9258392 prediction 0.501157007568568 Functional Loss - HMX2 ENSG00000188816 CDS Human protein_coding chr10:124909102 chr10:124909106 nonsynonymous SNV 0.168 2 25 hm5C_associated_SNPs_65067 0 0 0 0 1 HMX2 chr10:124909086 3'AG 124909086 Downstream 21bp
chr15 57524981 57524981 1 + C T GBM 57524979 + 57524959 57524999 41 CACCAATGTCCAGCTTTCATCGCGGCAGTACCAGCAGTTCA CACCAATGTCCAGCTTTCATCGTGGCAGTACCAGCAGTTCA < 41bp 0.759595811831475 0.509024000064108 0.81351805 0.85615426 prediction 0.501143623534734 Functional Loss - TCF12 ENSG00000140262 CDS Human protein_coding chr15:57524979 chr15:57524981 synonymous SNV . 0 23 hm5C_associated_SNPs_65069 1 0 1 0 1 TCF12 chr15:57525054 5'GT 57525054 Upstream 74bp
chr16 23570949 23570949 1 + G T LUAD 23570947 + 23570927 23570967 41 CACCCAAAGATGCTGCGCAGCAGGATGCAAAGGCCGAAGAG CACCCAAAGATGCTGCGCAGCATGATGCAAAGGCCGAAGAG < 41bp 0.888967651920309 0.638399081725691 0.43243784 0.05375439 prediction 0.501137140389236 Functional Loss - UBFD1 ENSG00000103353 CDS Human protein_coding chr16:23570947 chr16:23570949 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_65071 0 0 1 0 1 UBFD1 chr16:23570997 5'GT 23570997 Upstream 49bp
chr5 68709914 68709914 1 + G T HNSC 68709912 + 68709892 68709932 41 GGAATGATAGACCCTGACAGCGGAGATGAAGCCCAGCTTAA GGAATGATAGACCCTGACAGCGTAGATGAAGCCCAGCTTAA < 41bp 0.750566711422583 0.445154016969961 0.87681407 0.24637467 prediction 0.501133422845166 Functional Loss - RAD17 ENSG00000152942 CDS Human protein_coding chr5:68709912 chr5:68709914 nonsynonymous SNV 0.723 4 23 hm5C_associated_SNPs_65072 0 0 1 0 1 RAD17 chr5:68709858 3'AG 68709858 Downstream 57bp
chr14 69727161 69727161 1 + G C CESC 69727157 + 69727137 69727177 41 GGCAGGAGGTCGGAGCAGCTCCGCGAGGACCGCACCATCCC GGCAGGAGGTCGGAGCAGCTCCGCCAGGACCGCACCATCCC < 41bp 0.750565754319564 0.465111744532396 0.5339657 0.3139757 prediction 0.501131508639128 Functional Loss - GALNT16 ENSG00000100626 CDS Human protein_coding chr14:69727157 chr14:69727161 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_65073 0 0 0 0 1 GALNT16 chr14:69727184 5'GT 69727184 Upstream 24bp
chr7 36324326 36324326 1 + C T COAD 36324324 + 36324304 36324344 41 TATGCAGGATTCCTATGGGACGCGGCTGCCGGCATGGAGCT TATGCAGGATTCCTATGGGACGTGGCTGCCGGCATGGAGCT < 41bp 0.765021382416052 0.514455877346725 0.19086838 0.2509385 prediction 0.501131010138653 Functional Loss - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36324324 chr7:36324326 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_65074 0 0 1 0 1 EEPD1 chr7:36324295 3'AG 36324295 Downstream 32bp
chr2 98744741 98744741 1 + G T LUSC 98744739 + 98744719 98744759 41 CTTTGTGGTGGGGGATGTTCCTGAAGAATCCAAGGAGCTTC CTTTGTGGTGGGGGATGTTCCTTAAGAATCCAAGGAGCTTC < 41bp 0.750562802756257 0.435217154892512 0.33263808 0.039704442 prediction 0.501125605512515 Functional Loss - VWA3B ENSG00000168658 CDS Human protein_coding chr2:98744739 chr2:98744741 stopgain 0.973 0 23 hm5C_associated_SNPs_65075 0 0 0 1 1 VWA3B chr2:98744702 3'AG 98744702 Downstream 40bp
chr16 57778356 57778356 1 + C T SKCM 57778354 + 57778334 57778374 41 AGAGCGTCCGCCTCAACACCCCCGAGGAGCTCATCGTGGCC AGAGCGTCCGCCTCAACACCCCTGAGGAGCTCATCGTGGCC < 41bp 0.75056161215834 0.488891014775044 0.18455929 0.1341426 prediction 0.50112322431668 Functional Loss - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57778354 chr16:57778356 synonymous SNV . 0 23 hm5C_associated_SNPs_65076 0 0 0 0 2 KATNB1 chr16:57778306 3'AG 57778306 Downstream 51bp
chr16 57778356 57778356 1 + C T SKCM 57778354 + 57778334 57778374 41 AGAGCGTCCGCCTCAACACCCCCGAGGAGCTCATCGTGGCC AGAGCGTCCGCCTCAACACCCCTGAGGAGCTCATCGTGGCC < 41bp 0.75056161215834 0.488891014775044 0.18455929 0.1341426 prediction 0.50112322431668 Functional Loss - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57778354 chr16:57778356 synonymous SNV . 0 23 hm5C_associated_SNPs_65076 0 0 0 0 2 KATNB1 chr16:57778423 5'GT 57778423 Upstream 68bp
chr19 56180459 56180459 1 + G T CESC 56180456 + 56180436 56180476 41 CCTCCAAACACAGGCCATTGCGGGGCTGAACGGCATGCAGC CCTCCAAACACAGGCCATTGCGGTGCTGAACGGCATGCAGC < 41bp 0.923362543990723 0.672808777862152 0.9547491 0.57452184 prediction 0.501107532257141 Functional Loss - U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56180456 chr19:56180459 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_65079 0 0 1 0 2 U2AF2 chr19:56180449 3'AG 56180449 Downstream 11bp
chr19 56180459 56180459 1 + G T CESC 56180456 + 56180436 56180476 41 CCTCCAAACACAGGCCATTGCGGGGCTGAACGGCATGCAGC CCTCCAAACACAGGCCATTGCGGTGCTGAACGGCATGCAGC < 41bp 0.923362543990723 0.672808777862152 0.9547491 0.57452184 prediction 0.501107532257141 Functional Loss - U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56180456 chr19:56180459 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_65079 0 0 1 0 2 U2AF2 chr19:56180535 5'GT 56180535 Upstream 77bp
chr12 96641447 96641447 1 + T C UCEC 96641446 + 96641426 96641466 41 CTCTCCGGCACCGACATCGGCTCCATCGCCCTCAACAGCCC CTCTCCGGCACCGACATCGGCCCCATCGCCCTCAACAGCCC < 41bp 0.798066018601655 0.547513681073146 0.7653873 0.027945846 prediction 0.50110467505702 Functional Loss - ELK3 ENSG00000111145 CDS Human protein_coding chr12:96641446 chr12:96641447 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_65080 0 0 1 0 1 ELK3 chr12:96641512 5'GT 96641512 Upstream 66bp
chr10 69961617 69961617 1 + G T LUAD 69961615 + 69961595 69961635 41 TGAAGAAAGCACCTGTGATCCTGGAGAAACTACAGAACTGC TGAAGAAAGCACCTGTGATCCTTGAGAAACTACAGAACTGC < 41bp 0.863420241789502 0.612868114607624 0.6480613 0.047173977 prediction 0.501104254363755 Functional Loss - MYPN ENSG00000138347 CDS Human protein_coding chr10:69961615 chr10:69961617 synonymous SNV . 0 23 hm5C_associated_SNPs_65081 0 0 0 0 1 MYPN chr10:69961586 3'AG 69961586 Downstream 32bp
chr4 96069988 96069988 1 + G T COAD 96069986 + 96069966 96070006 41 GTGTTGGACGAGAGCTTGAACAGAAATCACTTCCAGTCTTA GTGTTGGACGAGAGCTTGAACATAAATCACTTCCAGTCTTA < 41bp 0.750548694464347 0.424037201688507 0.82081 0.1597512 prediction 0.501097388928694 Functional Loss - BMPR1B ENSG00000138696 CDS Human protein_coding chr4:96069986 chr4:96069988 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_65084 0 0 0 0 2 BMPR1B chr4:96069899 3'AG 96069899 Downstream 90bp
chr4 96069988 96069988 1 + G T COAD 96069986 + 96069966 96070006 41 GTGTTGGACGAGAGCTTGAACAGAAATCACTTCCAGTCTTA GTGTTGGACGAGAGCTTGAACATAAATCACTTCCAGTCTTA < 41bp 0.750548694464347 0.424037201688507 0.82081 0.1597512 prediction 0.501097388928694 Functional Loss - BMPR1B ENSG00000138696 CDS Human protein_coding chr4:96069986 chr4:96069988 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_65084 0 0 0 0 2 BMPR1B chr4:96070074 5'GT 96070074 Upstream 87bp
chr9 33295380 33295380 1 + C T LGG 33295378 + 33295358 33295398 41 TCAAGTAGTATCTCCTTTCTCCCGAGGCAAACAGAACCATG TCAAGTAGTATCTCCTTTCTCCTGAGGCAAACAGAACCATG < 41bp 0.750536897192562 0.478740415100411 0.41734976 0.7202943 prediction 0.501073794385124 Functional Loss - NFX1 ENSG00000086102 CDS Human protein_coding chr9:33295378 chr9:33295380 stopgain 0.975 1 23 hm5C_associated_SNPs_65086 0 0 1 0 1 NFX1 chr9:33295425 5'GT 33295425 Upstream 46bp
chr2 172945088 172945088 1 + C T STAD 172945086 + 172945066 172945106 41 TTCGAGCACACGGTTCTGATCACGTCGAGGGGCGCGCAGAT TTCGAGCACACGGTTCTGATCATGTCGAGGGGCGCGCAGAT < 41bp 0.750531718235311 0.492781601395167 0.44495583 0.364729 prediction 0.501063436470622 Functional Loss - METAP1D ENSG00000172878 CDS Human protein_coding chr2:172945086 chr2:172945088 nonsynonymous SNV 0.933 5 23 hm5C_associated_SNPs_65087 0 0 0 0 1 METAP1D chr2:172945056 3'AG 172945056 Downstream 33bp
chr13 25272825 25272825 1 + C T BRCA 25272823 + 25272803 25272843 41 TCCACGAGATGGATGACCCCCACGGCAAGCGCTTCCTCATG TCCACGAGATGGATGACCCCCATGGCAAGCGCTTCCTCATG < 41bp 0.783968456626581 0.533437132216316 0.075910926 0.074181795 prediction 0.50106264882053 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25272823 chr13:25272825 synonymous SNV . 0 23 hm5C_associated_SNPs_65088 0 0 0 0 1 ATP12A chr13:25272796 3'AG 25272796 Downstream 30bp
chr2 219500621 219500621 1 + G T SARC 219500619 + 219500599 219500639 41 CTTTGGCGTTCGTCTAGACACAGCACGGCAGGAGACCAACT CTTTGGCGTTCGTCTAGACACATCACGGCAGGAGACCAACT < 41bp 0.750525792777489 0.415566949461006 0.13223499 0.086441785 prediction 0.501051585554978 Functional Loss - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219500619 chr2:219500621 nonsynonymous SNV 0.080 0 23 hm5C_associated_SNPs_65091 0 0 0 0 1 PLCD4 chr2:219500654 5'GT 219500654 Upstream 34bp
chr5 35874580 35874580 1 + A C COAD 35874579 + 35874559 35874599 41 GATCCTATCTTACTAACCATCAGCATTTTGAGTTTTTTCTC GATCCTATCTTACTAACCATCCGCATTTTGAGTTTTTTCTC < 41bp 0.750513600796141 0.499668506659817 0.09755832 0.0128479 prediction 0.501027201592281 Functional Loss - IL7R ENSG00000168685 CDS Human protein_coding chr5:35874579 chr5:35874580 nonsynonymous SNV 0.732 1 22 hm5C_associated_SNPs_65093 0 0 0 0 2 IL7R chr5:35874551 3'AG 35874551 Downstream 30bp
chr5 35874580 35874580 1 + A C COAD 35874579 + 35874559 35874599 41 GATCCTATCTTACTAACCATCAGCATTTTGAGTTTTTTCTC GATCCTATCTTACTAACCATCCGCATTTTGAGTTTTTTCTC < 41bp 0.750513600796141 0.499668506659817 0.09755832 0.0128479 prediction 0.501027201592281 Functional Loss - IL7R ENSG00000168685 CDS Human protein_coding chr5:35874579 chr5:35874580 nonsynonymous SNV 0.732 1 22 hm5C_associated_SNPs_65093 0 0 0 0 2 IL7R chr5:35874644 5'GT 35874644 Upstream 65bp
chr20 61944481 61944481 1 + G T LIHC 61944479 + 61944459 61944499 41 CTCTCCCTAGATCTCTGTCCCAGGGAACCTCGGCACGGCCG CTCTCCCTAGATCTCTGTCCCATGGAACCTCGGCACGGCCG < 41bp 0.750512703799001 0.395050796720626 0.94424224 0.84662235 prediction 0.501025407598003 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61944479 chr20:61944481 nonsynonymous SNV 0.033 3 23 hm5C_associated_SNPs_65094 0 0 0 0 1 COL20A1 chr20:61944469 3'AG 61944469 Downstream 13bp
chr19 55048294 55048294 1 + A T rs115941053 55048290 + 55048270 55048310 41 CTTTTCTGTGGGCCGTGCAACGCCAGTCCCTGGCGGGACCT CTTTTCTGTGGGCCGTGCAACGCCTGTCCCTGGCGGGACCT < 41bp 0.863459525217296 0.612947086634488 0.7642364 0.24475464 prediction 0.501024877165617 Functional Loss - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55048290 chr19:55048294 synonymous SNV . 0 25 hm5C_associated_SNPs_65095 0 0 0 0 1 KIR3DX1 chr19:55048381 5'GT 55048381 Upstream 88bp
chr5 5306810 5306810 1 + G T UCEC 5306807 + 5306787 5306827 41 ATTTGCTGCTGCGGGACCCTCGAGGGGCAGCTGGTTTGCCT ATTTGCTGCTGCGGGACCCTCGATGGGCAGCTGGTTTGCCT < 41bp 0.913348447551021 0.662837794986065 0.9406214 0.8908906 prediction 0.501021305129912 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5306807 chr5:5306810 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_65096 0 0 0 0 1 ADAMTS16 chr5:5306841 5'GT 5306841 Upstream 32bp
chr8 24339793 24339793 1 + C T UCEC 24339791 + 24339771 24339811 41 GCAAGAAAAGATCCTTAAAACACGGAAGGATTTTGATCATG GCAAGAAAAGATCCTTAAAACATGGAAGGATTTTGATCATG < 41bp 0.750501887074499 0.489470259491942 0.11795241 0.09080389 prediction 0.501003774148998 Functional Loss - ADAM7 ENSG00000069206 CDS Human protein_coding chr8:24339791 chr8:24339793 nonsynonymous SNV 0.187 4 23 hm5C_associated_SNPs_65097 0 0 0 0 1 ADAM7 chr8:24339824 5'GT 24339824 Upstream 32bp
chr5 132015557 132015557 1 + G T STAD 132015555 + 132015535 132015575 41 CGATTCCTGAAACGGCTCGACAGGAACCTCTGGGGCCTGGC CGATTCCTGAAACGGCTCGACATGAACCTCTGGGGCCTGGC < 41bp 0.88953723257658 0.639044420880701 0.75121534 0.25565934 prediction 0.50098562339176 Functional Loss - IL4 ENSG00000113520 CDS Human protein_coding chr5:132015555 chr5:132015557 nonsynonymous SNV 0.745 4 23 hm5C_associated_SNPs_65098 0 0 0 0 1 IL4 chr5:132015582 5'GT 132015582 Upstream 26bp
chr12 57921342 57921342 1 + C T UCEC 57921340 + 57921320 57921360 41 CCACCTACCTCCAGTGTCACCACGGCAACTACTGACCCGGG CCACCTACCTCCAGTGTCACCATGGCAACTACTGACCCGGG < 41bp 0.768811252454378 0.518320830212425 0.37551332 0.39907128 prediction 0.500980844483907 Functional Loss - MBD6 ENSG00000166987 CDS Human protein_coding chr12:57921340 chr12:57921342 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_65099 0 0 1 0 1 MBD6 chr12:57921290 3'AG 57921290 Downstream 53bp
chr1 196883689 196883689 1 + C T SKCM 196883687 + 196883667 196883707 41 GTAATGGCATGCGGTTTAAGCTCCATGACACATTGGACTAC GTAATGGCATGCGGTTTAAGCTTCATGACACATTGGACTAC < 41bp 0.816564522108515 0.566078944785804 0.92518616 0.031193167 prediction 0.500971154645422 Functional Loss - CFHR4 ENSG00000134365 CDS Human protein_coding chr1:196883687 chr1:196883689 synonymous SNV . 0 23 hm5C_associated_SNPs_65100 0 0 0 0 1 CFHR4 chr1:196883625 3'AG 196883625 Downstream 65bp
chrX 123499617 123499617 1 + C T COAD 123499615 + 123499595 123499635 41 GTTTATTCTTTCACAGGTATCACGGTTACATTTATACATAC GTTTATTCTTTCACAGGTATCATGGTTACATTTATACATAC < 41bp 0.779301549562753 0.528824905418388 0.56563765 0.62273955 prediction 0.50095328828873 Functional Loss - SH2D1A ENSG00000183918 CDS Human protein_coding chrX:123499615 chrX:123499617 nonsynonymous SNV 0.969 0 23 hm5C_associated_SNPs_65101 0 0 0 0 2 SH2D1A chrX:123499611 3'AG 123499611 Downstream 7bp
chrX 123499617 123499617 1 + C T COAD 123499615 + 123499595 123499635 41 GTTTATTCTTTCACAGGTATCACGGTTACATTTATACATAC GTTTATTCTTTCACAGGTATCATGGTTACATTTATACATAC < 41bp 0.779301549562753 0.528824905418388 0.56563765 0.62273955 prediction 0.50095328828873 Functional Loss - SH2D1A ENSG00000183918 CDS Human protein_coding chrX:123499615 chrX:123499617 nonsynonymous SNV 0.969 0 23 hm5C_associated_SNPs_65101 0 0 0 0 2 SH2D1A chrX:123499674 5'GT 123499674 Upstream 58bp
chr11 134131678 134131678 1 + C T COAD 134131676 + 134131656 134131696 41 ATGGCAACAAGGCTGGTGGCCGCGCGGCTGATGGTCCGCAA ATGGCAACAAGGCTGGTGGCCGTGCGGCTGATGGTCCGCAA < 41bp 0.78785755970856 0.537387758298239 0.7491735 0.41072828 prediction 0.500939602820641 Functional Loss - ACAD8 ENSG00000151498 CDS Human protein_coding chr11:134131676 chr11:134131678 nonsynonymous SNV 0.714 4 23 hm5C_associated_SNPs_65102 0 0 1 0 1 ACAD8 chr11:134131632 3'AG 134131632 Downstream 47bp
chr21 45819237 45819237 1 + C T UCEC 45819235 + 45819215 45819255 41 GAGCCCAGAAACTGCTCACCCGCGTGTCCGAGGCCTGGGGG GAGCCCAGAAACTGCTCACCCGTGTGTCCGAGGCCTGGGGG < 41bp 0.750463431772158 0.483778492416978 0.3010077 0.16609722 prediction 0.500926863544316 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45819235 chr21:45819237 synonymous SNV . 0 23 hm5C_associated_SNPs_65103 0 0 0 0 2 TRPM2 chr21:45819179 3'AG 45819179 Downstream 59bp
chr21 45819237 45819237 1 + C T UCEC 45819235 + 45819215 45819255 41 GAGCCCAGAAACTGCTCACCCGCGTGTCCGAGGCCTGGGGG GAGCCCAGAAACTGCTCACCCGTGTGTCCGAGGCCTGGGGG < 41bp 0.750463431772158 0.483778492416978 0.3010077 0.16609722 prediction 0.500926863544316 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45819235 chr21:45819237 synonymous SNV . 0 23 hm5C_associated_SNPs_65103 0 0 0 0 2 TRPM2 chr21:45819324 5'GT 45819324 Upstream 88bp
chr16 19501773 19501773 1 + C T SKCM 19501771 + 19501751 19501791 41 GGTCTGCCTCTCTTCATTCACTCCATCTACAGCTGGATCGA GGTCTGCCTCTCTTCATTCACTTCATCTACAGCTGGATCGA < 41bp 0.7504459079481 0.462294771684268 0.95479214 0.05144632 prediction 0.5008918158962 Functional Loss - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19501771 chr16:19501773 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_65108 0 0 0 0 1 TMC5 chr16:19501717 3'AG 19501717 Downstream 57bp
chr15 85438322 85438322 1 + G T COAD 85438320 + 85438300 85438340 41 TGAGGAGGTTTCTCAAGCCTCAGGGCCATCCCCGCCTGCTG TGAGGAGGTTTCTCAAGCCTCATGGCCATCCCCGCCTGCTG < 41bp 0.899791227761796 0.649355932297485 0.9266001 0.45935613 prediction 0.500870590928622 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85438320 chr15:85438322 nonsynonymous SNV 0.011 1 23 hm5C_associated_SNPs_65110 0 0 0 0 1 SLC28A1 chr15:85438354 5'GT 85438354 Upstream 33bp
chr8 39806717 39806717 1 + A T CESC 39806713 + 39806693 39806733 41 CCACAGACCGAATGTGAAGACAGCAGTGCCATTGTCTTTGG CCACAGACCGAATGTGAAGACAGCTGTGCCATTGTCTTTGG < 41bp 0.855365812501746 0.604939783296978 0.048498303 0.113971025 prediction 0.500852058409537 Functional Loss - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39806713 chr8:39806717 synonymous SNV . 0 25 hm5C_associated_SNPs_65111 0 0 0 1 2 IDO2 chr8:39806668 3'AG 39806668 Downstream 50bp
chr8 39806717 39806717 1 + A T CESC 39806713 + 39806693 39806733 41 CCACAGACCGAATGTGAAGACAGCAGTGCCATTGTCTTTGG CCACAGACCGAATGTGAAGACAGCTGTGCCATTGTCTTTGG < 41bp 0.855365812501746 0.604939783296978 0.048498303 0.113971025 prediction 0.500852058409537 Functional Loss - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39806713 chr8:39806717 synonymous SNV . 0 25 hm5C_associated_SNPs_65111 0 0 0 1 2 IDO2 chr8:39806783 5'GT 39806783 Upstream 67bp
chr19 9267985 9267985 1 + G T COAD 9267982 + 9267962 9268002 41 GATGTCGCTGTGGACTTTACCGAGAAGGAGTGGCCCTTGCT GATGTCGCTGTGGACTTTACCGATAAGGAGTGGCCCTTGCT < 41bp 0.80725829678728 0.556834772889139 0.8982988 0.15729696 prediction 0.500847047796283 Functional Loss - ZNF317 ENSG00000130803 CDS Human protein_coding chr19:9267982 chr19:9267985 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_65113 0 0 1 0 2 ZNF317 chr19:9267944 3'AG 9267944 Downstream 42bp
chr19 9267985 9267985 1 + G T COAD 9267982 + 9267962 9268002 41 GATGTCGCTGTGGACTTTACCGAGAAGGAGTGGCCCTTGCT GATGTCGCTGTGGACTTTACCGATAAGGAGTGGCCCTTGCT < 41bp 0.80725829678728 0.556834772889139 0.8982988 0.15729696 prediction 0.500847047796283 Functional Loss - ZNF317 ENSG00000130803 CDS Human protein_coding chr19:9267982 chr19:9267985 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_65113 0 0 1 0 2 ZNF317 chr19:9268070 5'GT 9268070 Upstream 86bp
chr2 27528515 27528515 1 + G T CESC 27528512 + 27528492 27528532 41 TTGAGAGCCTGTGCGCAGTGCTGGAGGAGCGCAAGGGTGAG TTGAGAGCCTGTGCGCAGTGCTGTAGGAGCGCAAGGGTGAG < 41bp 0.91873329362082 0.668313642304976 0.42304587 0.26846743 prediction 0.500839302631689 Functional Loss - TRIM54 ENSG00000138100 CDS Human protein_coding chr2:27528512 chr2:27528515 stopgain 0.945 1 24 hm5C_associated_SNPs_65114 0 0 0 0 1 TRIM54 chr2:27528452 3'AG 27528452 Downstream 64bp
chr11 47297655 47297655 1 + C T COAD 47297653 + 47297633 47297673 41 CTTTGCTCTTCCAGACCCATCTCGATTCACCCTAGTGGATT CTTTGCTCTTCCAGACCCATCTTGATTCACCCTAGTGGATT < 41bp 0.811326397530487 0.560907702901869 0.6687262 0.0685631 prediction 0.500837389257236 Functional Loss - MADD ENSG00000110514 CDS Human protein_coding chr11:47297653 chr11:47297655 stopgain 0.998 1 23 hm5C_associated_SNPs_65115 0 0 1 0 1 MADD chr11:47297753 5'GT 47297753 Upstream 99bp
chr7 92938234 92938234 1 + A C rs141252888 92938233 + 92938213 92938253 41 AGACTATGTGGATGAGCAGACAGGAGATGGTCCTGTGAAAA AGACTATGTGGATGAGCAGACCGGAGATGGTCCTGTGAAAA < 41bp 0.750451224968094 0.500037395230068 0.8755804 0.69912666 prediction 0.500827659476053 Functional Loss - VPS50 ENSG00000004766 CDS Human protein_coding chr7:92938233 chr7:92938234 synonymous SNV . 0 22 hm5C_associated_SNPs_65117 0 0 1 0 2 VPS50 chr7:92938136 3'AG 92938136 Downstream 99bp
chr7 92938234 92938234 1 + A C rs141252888 92938233 + 92938213 92938253 41 AGACTATGTGGATGAGCAGACAGGAGATGGTCCTGTGAAAA AGACTATGTGGATGAGCAGACCGGAGATGGTCCTGTGAAAA < 41bp 0.750451224968094 0.500037395230068 0.8755804 0.69912666 prediction 0.500827659476053 Functional Loss - VPS50 ENSG00000004766 CDS Human protein_coding chr7:92938233 chr7:92938234 synonymous SNV . 0 22 hm5C_associated_SNPs_65117 0 0 1 0 2 VPS50 chr7:92938254 5'GT 92938254 Upstream 21bp
chr9 80921290 80921290 1 + C T GBM 80921288 + 80921268 80921308 41 GCCTCCTACGTGTATTATTGCGCAAATGAGACGGTGCATGG GCCTCCTACGTGTATTATTGCGTAAATGAGACGGTGCATGG < 41bp 0.826313273823645 0.575899663719299 0.54914576 0.39721048 prediction 0.500827220208692 Functional Loss - PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80921288 chr9:80921290 nonsynonymous SNV 0.937 1 23 hm5C_associated_SNPs_65118 0 0 1 0 1 PSAT1 chr9:80921230 3'AG 80921230 Downstream 61bp
chrX 10188910 10188910 1 + C T BLCA 10188908 + 10188888 10188928 41 GCTTCGGCAGTGCCTGGTGACGCGGAGCGGGTGAGTAGCCG GCTTCGGCAGTGCCTGGTGACGTGGAGCGGGTGAGTAGCCG < 41bp 0.792512987586617 0.542107611110668 0.8027166 0.7852776 prediction 0.500810752951898 Functional Loss - CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10188908 chrX:10188910 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_65119 0 0 0 0 1 CLCN4 chrX:10188917 5'GT 10188917 Upstream 8bp
chr8 22969319 22969319 1 + G T COAD 22969316 + 22969296 22969336 41 CAGCAACAGAGGCACAGCTTCAAGGGGGAGGAGTGTCCAGC CAGCAACAGAGGCACAGCTTCAATGGGGAGGAGTGTCCAGC < 41bp 0.75040235843833 0.352543482561484 0.9068159 0.5071711 prediction 0.50080471687666 Functional Loss - TNFRSF10C ENSG00000173535 CDS Human protein_coding chr8:22969316 chr8:22969319 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_65121 0 0 0 0 2 TNFRSF10C chr8:22969233 3'AG 22969233 Downstream 87bp
chr8 22969319 22969319 1 + G T COAD 22969316 + 22969296 22969336 41 CAGCAACAGAGGCACAGCTTCAAGGGGGAGGAGTGTCCAGC CAGCAACAGAGGCACAGCTTCAATGGGGAGGAGTGTCCAGC < 41bp 0.75040235843833 0.352543482561484 0.9068159 0.5071711 prediction 0.50080471687666 Functional Loss - TNFRSF10C ENSG00000173535 CDS Human protein_coding chr8:22969316 chr8:22969319 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_65121 0 0 0 0 2 TNFRSF10C chr8:22969338 5'GT 22969338 Upstream 20bp
chr20 62664245 62664245 1 + G T BLCA 62664242 + 62664222 62664262 41 GTGAGAGTGCAGAGCCTCGGCATGGGGAGCTGTGGTGCGCC GTGAGAGTGCAGAGCCTCGGCATTGGGAGCTGTGGTGCGCC < 41bp 0.750395390325934 0.352981185218012 0.78824997 0.25162202 prediction 0.500790780651868 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62664242 chr20:62664245 nonsynonymous SNV 0.248 4 24 hm5C_associated_SNPs_65123 0 0 1 0 1 PRPF6 chr20:62664194 3'AG 62664194 Downstream 52bp
chr11 123464857 123464857 1 + C T rs531490633 123464855 + 123464835 123464875 41 CTCTTTAAGCAGCTTCCAGACACGGAGCGCCTCATTGTTGG CTCTTTAAGCAGCTTCCAGACATGGAGCGCCTCATTGTTGG < 41bp 0.750388236556873 0.474910473257746 0.16914096 0.22534028 prediction 0.500776473113745 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123464855 chr11:123464857 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_65124 0 0 0 0 2 GRAMD1B chr11:123464790 3'AG 123464790 Downstream 68bp
chr11 123464857 123464857 1 + C T rs531490633 123464855 + 123464835 123464875 41 CTCTTTAAGCAGCTTCCAGACACGGAGCGCCTCATTGTTGG CTCTTTAAGCAGCTTCCAGACATGGAGCGCCTCATTGTTGG < 41bp 0.750388236556873 0.474910473257746 0.16914096 0.22534028 prediction 0.500776473113745 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123464855 chr11:123464857 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_65124 0 0 0 0 2 GRAMD1B chr11:123464874 5'GT 123464874 Upstream 18bp
chr6 88046820 88046820 1 + G T STAD 88046817 + 88046797 88046837 41 AGAGAAAGAGTTTCAAAGCCCAGGGCTCAGAGGGGTGCGCA AGAGAAAGAGTTTCAAAGCCCAGTGCTCAGAGGGGTGCGCA < 41bp 0.913393697411678 0.663005981466101 0.3752511 0.325575 prediction 0.500775431891155 Functional Loss - SMIM8 ENSG00000111850;ENSG00000226524 CDS Human other chr6:88046817 chr6:88046820 nonsynonymous SNV 0.941 4 24 hm5C_associated_SNPs_65125 0 0 1 0 2 SMIM8 chr6:88046727 3'AG 88046727 Downstream 94bp
chr6 88046820 88046820 1 + G T STAD 88046817 + 88046797 88046837 41 AGAGAAAGAGTTTCAAAGCCCAGGGCTCAGAGGGGTGCGCA AGAGAAAGAGTTTCAAAGCCCAGTGCTCAGAGGGGTGCGCA < 41bp 0.913393697411678 0.663005981466101 0.3752511 0.325575 prediction 0.500775431891155 Functional Loss - SMIM8 ENSG00000111850;ENSG00000226524 CDS Human other chr6:88046817 chr6:88046820 nonsynonymous SNV 0.941 4 24 hm5C_associated_SNPs_65125 0 0 1 0 2 SMIM8 chr6:88046884 5'GT 88046884 Upstream 65bp
chr19 10220645 10220645 1 + A T LUAD 10220641 + 10220621 10220661 41 GCGGGATGAAGAAGCTGCTCCAGGAGAAGTTCCCCAACATG GCGGGATGAAGAAGCTGCTCCAGGTGAAGTTCCCCAACATG < 41bp 0.863159787733111 0.612775389608675 0.8699597 0.8861508 prediction 0.500768796248871 Functional Loss - PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10220641 chr19:10220645 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_65127 0 0 1 0 2 PPAN;PPAN-P2RY11 chr19:10220589 3'AG 10220589 Downstream 57bp
chr19 10220645 10220645 1 + A T LUAD 10220641 + 10220621 10220661 41 GCGGGATGAAGAAGCTGCTCCAGGAGAAGTTCCCCAACATG GCGGGATGAAGAAGCTGCTCCAGGTGAAGTTCCCCAACATG < 41bp 0.863159787733111 0.612775389608675 0.8699597 0.8861508 prediction 0.500768796248871 Functional Loss - PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10220641 chr19:10220645 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_65127 0 0 1 0 2 PPAN;PPAN-P2RY11 chr19:10220696 5'GT 10220696 Upstream 52bp
chr15 44053654 44053654 1 + G T LUAD 44053652 + 44053632 44053672 41 CAGCCACTTGAAGAAGCAGGCAGGACCAGCTTCAGTGCCTC CAGCCACTTGAAGAAGCAGGCATGACCAGCTTCAGTGCCTC < 41bp 0.750381520726785 0.399679800779542 0.78472877 0.18379891 prediction 0.50076304145357 Functional Loss - PDIA3 ENSG00000167004 CDS Human protein_coding chr15:44053652 chr15:44053654 stopgain 0.999 1 23 hm5C_associated_SNPs_65129 0 0 1 0 2 PDIA3 chr15:44053622 3'AG 44053622 Downstream 33bp
chr15 44053654 44053654 1 + G T LUAD 44053652 + 44053632 44053672 41 CAGCCACTTGAAGAAGCAGGCAGGACCAGCTTCAGTGCCTC CAGCCACTTGAAGAAGCAGGCATGACCAGCTTCAGTGCCTC < 41bp 0.750381520726785 0.399679800779542 0.78472877 0.18379891 prediction 0.50076304145357 Functional Loss - PDIA3 ENSG00000167004 CDS Human protein_coding chr15:44053652 chr15:44053654 stopgain 0.999 1 23 hm5C_associated_SNPs_65129 0 0 1 0 2 PDIA3 chr15:44053729 5'GT 44053729 Upstream 76bp
chr14 102918885 102918885 1 + C T GBM 102918883 + 102918863 102918903 41 CGCTGTGGGCGCTGGACAGCCTCGGCCAGGTGTTCATCAGG CGCTGTGGGCGCTGGACAGCCTTGGCCAGGTGTTCATCAGG < 41bp 0.750379877392528 0.47558229307267 0.84285545 0.6293919 prediction 0.500759754785055 Functional Loss - TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102918883 chr14:102918885 synonymous SNV . 0 23 hm5C_associated_SNPs_65130 0 0 0 0 1 TECPR2 chr14:102918964 5'GT 102918964 Upstream 80bp
chr1 178490398 178490398 1 + G T LUAD 178490396 + 178490376 178490416 41 CTCTAAAGAACAACTACAATCGGGGTAGGTAGATTCATACA CTCTAAAGAACAACTACAATCGTGGTAGGTAGATTCATACA < 41bp 0.881889491125018 0.631509656834793 0.9405074 0.8531278 prediction 0.500759668580449 Functional Loss - TEX35 ENSG00000240021 CDS Human protein_coding chr1:178490396 chr1:178490398 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_65131 0 0 0 0 2 TEX35 chr1:178490357 3'AG 178490357 Downstream 42bp
chr1 178490398 178490398 1 + G T LUAD 178490396 + 178490376 178490416 41 CTCTAAAGAACAACTACAATCGGGGTAGGTAGATTCATACA CTCTAAAGAACAACTACAATCGTGGTAGGTAGATTCATACA < 41bp 0.881889491125018 0.631509656834793 0.9405074 0.8531278 prediction 0.500759668580449 Functional Loss - TEX35 ENSG00000240021 CDS Human protein_coding chr1:178490396 chr1:178490398 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_65131 0 0 0 0 2 TEX35 chr1:178490399 5'GT 178490399 Upstream 2bp
chr2 79255015 79255015 1 + C T LUSC 79255013 + 79254993 79255033 41 GCATGGGAGAAAAATCCCTCCACCATCTTAAACCCTGGCCA GCATGGGAGAAAAATCCCTCCATCATCTTAAACCCTGGCCA < 41bp 0.750369901908509 0.484030475230555 0.05957672 0.028548062 prediction 0.500739803817018 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79255013 chr2:79255015 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_65133 0 0 0 0 2 REG3G chr2:79254933 3'AG 79254933 Downstream 83bp
chr2 79255015 79255015 1 + C T LUSC 79255013 + 79254993 79255033 41 GCATGGGAGAAAAATCCCTCCACCATCTTAAACCCTGGCCA GCATGGGAGAAAAATCCCTCCATCATCTTAAACCCTGGCCA < 41bp 0.750369901908509 0.484030475230555 0.05957672 0.028548062 prediction 0.500739803817018 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79255013 chr2:79255015 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_65133 0 0 0 0 2 REG3G chr2:79255059 5'GT 79255059 Upstream 45bp
chr1 4771961 4771961 1 + T C UCEC 4771960 + 4771940 4771980 41 CTCCTTTCCCCCCCGCACAGCTCCATGTCCATCCGCTGGCC CTCCTTTCCCCCCCGCACAGCCCCATGTCCATCCGCTGGCC < 41bp 0.750369423336815 0.498602897692329 0.8559947 0.07198864 prediction 0.50073884667363 Functional Loss - AJAP1 ENSG00000196581 CDS Human protein_coding chr1:4771960 chr1:4771961 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_65134 0 0 0 0 1 AJAP1 chr1:4771960 3'AG 4771960 Downstream 2bp
chr1 40535953 40535953 1 + A T rs183895819 40535949 + 40535929 40535969 41 GGGCAAAATTAACTCCATTACAGTAGGTGAGTCTTTGTCGC GGGCAAAATTAACTCCATTACAGTTGGTGAGTCTTTGTCGC < 41bp 0.750356214002985 0.428228651254136 0.7286775 0.25892532 prediction 0.50071242800597 Functional Loss - CAP1 ENSG00000131236 CDS Human protein_coding chr1:40535949 chr1:40535953 synonymous SNV . 0 25 hm5C_associated_SNPs_65139 0 0 0 0 1 CAP1 chr1:40535954 5'GT 40535954 Upstream 2bp
chr3 32931919 32931919 1 + T C ESCA 32931918 + 32931898 32931938 41 TGGAGAAGCTGCGGCAAAACCTCAACAAGCTTGAGAGCACC TGGAGAAGCTGCGGCAAAACCCCAACAAGCTTGAGAGCACC < 41bp 0.779015663915143 0.528667149827844 0.30181402 0.15000138 prediction 0.500697028174598 Functional Loss - TRIM71 ENSG00000206557 CDS Human protein_coding chr3:32931918 chr3:32931919 nonsynonymous SNV 0.871 5 22 hm5C_associated_SNPs_65140 0 0 0 0 1 TRIM71 chr3:32931852 3'AG 32931852 Downstream 68bp
chr19 54137908 54137908 1 + C T SKCM 54137906 + 54137886 54137926 41 AGCCTTCAGAAAGAAATGGCCTCGAAAATAGACATACACCC AGCCTTCAGAAAGAAATGGCCTTGAAAATAGACATACACCC < 41bp 0.813994964360619 0.563650879481483 0.2947095 0.02448076 prediction 0.500688169758273 Functional Loss - DPRX ENSG00000204595 CDS Human protein_coding chr19:54137906 chr19:54137908 nonsynonymous SNV 0.190 3 23 hm5C_associated_SNPs_65142 0 0 0 0 1 DPRX chr19:54137939 5'GT 54137939 Upstream 32bp
chr3 122808133 122808133 1 + C T SKCM 122808131 + 122808111 122808151 41 AATAATGTACTGGTGCTTTACTCCAAATCTGGTGAGTGTCC AATAATGTACTGGTGCTTTACTTCAAATCTGGTGAGTGTCC < 41bp 0.750341528775771 0.449140090313986 0.95990026 0.15305835 prediction 0.500683057551543 Functional Loss - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122808131 chr3:122808133 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_65143 0 0 1 1 1 PDIA5 chr3:122808141 5'GT 122808141 Upstream 9bp
chr17 47246956 47246956 1 + C T rs61743617 47246954 + 47246934 47246974 41 AGTGATTATAGGTCACCAGTCTCGGTCTCCAGTGGTGGACT AGTGATTATAGGTCACCAGTCTTGGTCTCCAGTGGTGGACT < 41bp 0.769343655623661 0.519012380745819 0.0695034 0.03284943 prediction 0.500662549755683 Functional Loss - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47246954 chr17:47246956 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_65145 0 0 0 0 1 B4GALNT2 chr17:47246885 3'AG 47246885 Downstream 72bp
chr1 100752704 100752704 1 + G T LUAD 100752701 + 100752681 100752721 41 TGGAGTTTCCAGAATAAAAACAGGACCAGTTACACTCCATA TGGAGTTTCCAGAATAAAAACAGTACCAGTTACACTCCATA < 41bp 0.750330713794235 0.397031475939408 0.24100193 0.13324755 prediction 0.50066142758847 Functional Loss - RTCA ENSG00000137996 CDS Human protein_coding chr1:100752701 chr1:100752704 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_65146 0 0 1 0 2 RTCA chr1:100752655 3'AG 100752655 Downstream 50bp
chr1 100752704 100752704 1 + G T LUAD 100752701 + 100752681 100752721 41 TGGAGTTTCCAGAATAAAAACAGGACCAGTTACACTCCATA TGGAGTTTCCAGAATAAAAACAGTACCAGTTACACTCCATA < 41bp 0.750330713794235 0.397031475939408 0.24100193 0.13324755 prediction 0.50066142758847 Functional Loss - RTCA ENSG00000137996 CDS Human protein_coding chr1:100752701 chr1:100752704 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_65146 0 0 1 0 2 RTCA chr1:100752759 5'GT 100752759 Upstream 56bp
chr7 142566068 142566068 1 + G C KIRP 142566067 + 142566047 142566087 41 AGGCCATCCGAGAACTTGCCCGGGAAGTCGATCCTGCTTAT AGGCCATCCGAGAACTTGCCCCGGAAGTCGATCCTGCTTAT < 41bp 0.855618468551204 0.605291069196389 0.88923657 0.43523112 prediction 0.500654798709631 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142566067 chr7:142566068 nonsynonymous SNV 0.982 0 22 hm5C_associated_SNPs_65147 0 0 0 0 2 EPHB6 chr7:142565996 3'AG 142565996 Downstream 73bp
chr7 142566068 142566068 1 + G C KIRP 142566067 + 142566047 142566087 41 AGGCCATCCGAGAACTTGCCCGGGAAGTCGATCCTGCTTAT AGGCCATCCGAGAACTTGCCCCGGAAGTCGATCCTGCTTAT < 41bp 0.855618468551204 0.605291069196389 0.88923657 0.43523112 prediction 0.500654798709631 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142566067 chr7:142566068 nonsynonymous SNV 0.982 0 22 hm5C_associated_SNPs_65147 0 0 0 0 2 EPHB6 chr7:142566115 5'GT 142566115 Upstream 48bp
chr16 77228997 77228997 1 + T C COAD 77228996 + 77228976 77229016 41 CGCCGGGCCTCCGGCACTTCCTGTATAAGCCGCTGGACATC CGCCGGGCCTCCGGCACTTCCCGTATAAGCCGCTGGACATC < 41bp 0.766307902959858 0.515982079500794 0.50446534 0.30404347 prediction 0.500651646918128 Functional Loss - MON1B ENSG00000103111 CDS Human protein_coding chr16:77228996 chr16:77228997 nonsynonymous SNV 0.970 4 22 hm5C_associated_SNPs_65149 0 0 1 0 1 MON1B chr16:77229051 5'GT 77229051 Upstream 55bp
chr19 24102881 24102881 1 + C T SKCM 24102879 + 24102859 24102899 41 AGATGAGATGGTGGATGAACCCCCAGGTAGGTGAGAGTGAA AGATGAGATGGTGGATGAACCCTCAGGTAGGTGAGAGTGAA < 41bp 0.750325613312172 0.489223152269811 0.07795772 0.03339079 prediction 0.500651226624343 Functional Loss - ZNF726 ENSG00000213967 CDS Human protein_coding chr19:24102879 chr19:24102881 nonsynonymous SNV 0.649 0 23 hm5C_associated_SNPs_65150 0 0 0 0 2 ZNF726 chr19:24102789 3'AG 24102789 Downstream 93bp
chr19 24102881 24102881 1 + C T SKCM 24102879 + 24102859 24102899 41 AGATGAGATGGTGGATGAACCCCCAGGTAGGTGAGAGTGAA AGATGAGATGGTGGATGAACCCTCAGGTAGGTGAGAGTGAA < 41bp 0.750325613312172 0.489223152269811 0.07795772 0.03339079 prediction 0.500651226624343 Functional Loss - ZNF726 ENSG00000213967 CDS Human protein_coding chr19:24102879 chr19:24102881 nonsynonymous SNV 0.649 0 23 hm5C_associated_SNPs_65150 0 0 0 0 2 ZNF726 chr19:24102884 5'GT 24102884 Upstream 4bp
chr17 16326175 16326175 1 + G A rs139208164 16326172 + 16326152 16326192 41 CGGGCCTGCGGCCGCTTCTTCCAGAAGGGCCAAGGGACTTG CGGGCCTGCGGCCGCTTCTTCCAAAAGGGCCAAGGGACTTG < 41bp 0.753747027520101 0.503421648637653 0.695117 0.34194875 prediction 0.500650757764894 Functional Loss - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16326172 chr17:16326175 synonymous SNV . 0 24 hm5C_associated_SNPs_65151 0 0 0 0 2 TRPV2 chr17:16326203 5'GT 16326203 Upstream 29bp
chr17 16326175 16326175 1 + G A rs139208164 16326172 + 16326152 16326192 41 CGGGCCTGCGGCCGCTTCTTCCAGAAGGGCCAAGGGACTTG CGGGCCTGCGGCCGCTTCTTCCAAAAGGGCCAAGGGACTTG < 41bp 0.753747027520101 0.503421648637653 0.695117 0.34194875 prediction 0.500650757764894 Functional Loss - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16326172 chr17:16326175 synonymous SNV . 0 24 hm5C_associated_SNPs_65151 0 0 0 0 2 TRPV2 chr17:16326207 5'GT 16326207 Upstream 33bp
chr1 17557133 17557133 1 + A C rs3003406 17557132 + 17557112 17557152 41 CCCGTGGTCTTTGACTCCCCCAGGAACAGGGGCCTGAAAGA CCCGTGGTCTTTGACTCCCCCCGGAACAGGGGCCTGAAAGA < 41bp 0.785168055152332 0.534843126672861 0.30307162 0.04222539 prediction 0.500649856958942 Functional Loss - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17557132 chr1:17557133 synonymous SNV . 0 22 hm5C_associated_SNPs_65152 0 0 0 0 2 PADI1 chr1:17557067 3'AG 17557067 Downstream 67bp
chr1 17557133 17557133 1 + A C rs3003406 17557132 + 17557112 17557152 41 CCCGTGGTCTTTGACTCCCCCAGGAACAGGGGCCTGAAAGA CCCGTGGTCTTTGACTCCCCCCGGAACAGGGGCCTGAAAGA < 41bp 0.785168055152332 0.534843126672861 0.30307162 0.04222539 prediction 0.500649856958942 Functional Loss - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17557132 chr1:17557133 synonymous SNV . 0 22 hm5C_associated_SNPs_65152 0 0 0 0 2 PADI1 chr1:17557174 5'GT 17557174 Upstream 42bp
chr16 84328674 84328674 1 + A T HNSC 84328670 + 84328650 84328690 41 CTCCTCCACGCCGGCTCTGCCAAGAATATCTGGAAACGGGC CTCCTCCACGCCGGCTCTGCCAAGTATATCTGGAAACGGGC < 41bp 0.846091065788801 0.595780214691303 0.7021422 0.6685545 prediction 0.500621702194995 Functional Loss - WFDC1 ENSG00000103175 CDS Human protein_coding chr16:84328670 chr16:84328674 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_65154 0 0 0 0 1 WFDC1 chr16:84328721 5'GT 84328721 Upstream 48bp
chr15 27128373 27128373 1 + C T COAD 27128371 + 27128351 27128391 41 AGCTTCGGCCCGGTGTCCGACACGGAAATGGTAGGTCCCGG AGCTTCGGCCCGGTGTCCGACATGGAAATGGTAGGTCCCGG < 41bp 0.79120190750688 0.540898949443515 0.2677026 0.23304075 prediction 0.500605916126729 Functional Loss - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27128371 chr15:27128373 nonsynonymous SNV 0.993 3 23 hm5C_associated_SNPs_65157 0 0 0 0 2 GABRA5 chr15:27128313 3'AG 27128313 Downstream 61bp
chr15 27128373 27128373 1 + C T COAD 27128371 + 27128351 27128391 41 AGCTTCGGCCCGGTGTCCGACACGGAAATGGTAGGTCCCGG AGCTTCGGCCCGGTGTCCGACATGGAAATGGTAGGTCCCGG < 41bp 0.79120190750688 0.540898949443515 0.2677026 0.23304075 prediction 0.500605916126729 Functional Loss - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27128371 chr15:27128373 nonsynonymous SNV 0.993 3 23 hm5C_associated_SNPs_65157 0 0 0 0 2 GABRA5 chr15:27128380 5'GT 27128380 Upstream 8bp
chr14 24845700 24845700 1 + G T OV 24845698 + 24845678 24845718 41 GCCCCCTCTGTACCCCCAGACGGGGCCCCCACCATCCTACA GCCCCCTCTGTACCCCCAGACGTGGCCCCCACCATCCTACA < 41bp 0.844283523150413 0.59398617085233 0.91745 0.09773597 prediction 0.500594704596165 Functional Loss - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24845698 chr14:24845700 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_65160 0 0 1 0 1 NFATC4 chr14:24845760 5'GT 24845760 Upstream 61bp
chr4 158060002 158060002 1 + G T HNSC 158060000 + 158059980 158060020 41 TTTACGATTTATCTGGCAGTCAGGAGATCCTGTGCAATTAG TTTACGATTTATCTGGCAGTCATGAGATCCTGTGCAATTAG < 41bp 0.870447237608587 0.620169653288818 0.8529409 0.28124183 prediction 0.500555168639537 Functional Loss - GLRB ENSG00000109738 CDS Human protein_coding chr4:158060000 chr4:158060002 stopgain 0.996 1 23 hm5C_associated_SNPs_65163 0 0 0 0 2 GLRB chr4:158059961 3'AG 158059961 Downstream 42bp
chr4 158060002 158060002 1 + G T HNSC 158060000 + 158059980 158060020 41 TTTACGATTTATCTGGCAGTCAGGAGATCCTGTGCAATTAG TTTACGATTTATCTGGCAGTCATGAGATCCTGTGCAATTAG < 41bp 0.870447237608587 0.620169653288818 0.8529409 0.28124183 prediction 0.500555168639537 Functional Loss - GLRB ENSG00000109738 CDS Human protein_coding chr4:158060000 chr4:158060002 stopgain 0.996 1 23 hm5C_associated_SNPs_65163 0 0 0 0 2 GLRB chr4:158060101 5'GT 158060101 Upstream 100bp
chr20 61941176 61941176 1 + C T SKCM 61941174 + 61941154 61941194 41 GTCCTGAGCCAGGTGACCTCCTCCAGCATCCGCCTGTCCTG GTCCTGAGCCAGGTGACCTCCTTCAGCATCCGCCTGTCCTG < 41bp 0.802729126687919 0.552455960519435 0.9630085 0.36642295 prediction 0.500546332336969 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61941174 chr20:61941176 nonsynonymous SNV 0.221 3 23 hm5C_associated_SNPs_65164 0 0 0 0 2 COL20A1 chr20:61941110 3'AG 61941110 Downstream 67bp
chr20 61941176 61941176 1 + C T SKCM 61941174 + 61941154 61941194 41 GTCCTGAGCCAGGTGACCTCCTCCAGCATCCGCCTGTCCTG GTCCTGAGCCAGGTGACCTCCTTCAGCATCCGCCTGTCCTG < 41bp 0.802729126687919 0.552455960519435 0.9630085 0.36642295 prediction 0.500546332336969 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61941174 chr20:61941176 nonsynonymous SNV 0.221 3 23 hm5C_associated_SNPs_65164 0 0 0 0 2 COL20A1 chr20:61941267 5'GT 61941267 Upstream 92bp
chr22 18064149 18064149 1 + C T UCS 18064147 + 18064127 18064167 41 CGACTGCCTGATGAAGACGGCTCGGGCGGAGGGCTTCTTCG CGACTGCCTGATGAAGACGGCTTGGGCGGAGGGCTTCTTCG < 41bp 0.790020441893647 0.539758429003435 0.29609454 0.32141942 prediction 0.500524025780424 Functional Loss - LOC101929372;SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18064147 chr22:18064149 nonsynonymous SNV 0.435 4 23 hm5C_associated_SNPs_65167 0 0 0 0 2 LOC101929372;SLC25A18 chr22:18064124 3'AG 18064124 Downstream 26bp
chr22 18064149 18064149 1 + C T UCS 18064147 + 18064127 18064167 41 CGACTGCCTGATGAAGACGGCTCGGGCGGAGGGCTTCTTCG CGACTGCCTGATGAAGACGGCTTGGGCGGAGGGCTTCTTCG < 41bp 0.790020441893647 0.539758429003435 0.29609454 0.32141942 prediction 0.500524025780424 Functional Loss - LOC101929372;SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18064147 chr22:18064149 nonsynonymous SNV 0.435 4 23 hm5C_associated_SNPs_65167 0 0 0 0 2 LOC101929372;SLC25A18 chr22:18064179 5'GT 18064179 Upstream 31bp
chr8 104342230 104342230 1 + G T STAD 104342227 + 104342207 104342247 41 AGCATCCATCTCCAGACTCTCTGGGGAACAGGTCGACGGGA AGCATCCATCTCCAGACTCTCTGTGGAACAGGTCGACGGGA < 41bp 0.911661716528121 0.661404305839631 0.91186094 0.10249463 prediction 0.500514821376981 Functional Loss - FZD6 ENSG00000164930 CDS Human protein_coding chr8:104342227 chr8:104342230 nonsynonymous SNV 0.503 0 24 hm5C_associated_SNPs_65168 0 0 1 0 1 FZD6 chr8:104342293 5'GT 104342293 Upstream 64bp
chr4 190862186 190862186 1 + A T PRAD 190862182 + 190862162 190862202 41 GCCATGGCCGAGTACTCCTACGTGAAGTCTACCAAGCTCGT GCCATGGCCGAGTACTCCTACGTGTAGTCTACCAAGCTCGT < 41bp 0.750245494323517 0.440049555349121 0.83718956 0.7523205 prediction 0.500490988647033 Functional Loss - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190862182 chr4:190862186 stopgain 0.625 1 25 hm5C_associated_SNPs_65173 0 0 1 0 1 FRG1 chr4:190862226 5'GT 190862226 Upstream 41bp
chr18 76752117 76752117 1 + G T LUSC 76752114 + 76752094 76752134 41 GAGGACGCAGACAGCGGGCCCGAGAGCCGCAGCGGGGGCGA GAGGACGCAGACAGCGGGCCCGATAGCCGCAGCGGGGGCGA < 41bp 0.915005568509587 0.664760087341114 0.89221346 0.7756287 prediction 0.500490962336946 Functional Loss - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76752114 chr18:76752117 nonsynonymous SNV 0.014 0 24 hm5C_associated_SNPs_65174 0 0 0 0 1 SALL3 chr18:76752074 3'AG 76752074 Downstream 44bp
chr14 102906840 102906840 1 + G T LUSC 102906837 + 102906817 102906857 41 GCTTGTGGGAAAGTCACCATCAAGGGGAAGCGGCACTGGTA GCTTGTGGGAAAGTCACCATCAATGGGAAGCGGCACTGGTA < 41bp 0.750240922352408 0.352850122196057 0.9365114 0.86300623 prediction 0.500481844704816 Functional Loss - TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102906837 chr14:102906840 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_65175 0 0 0 0 1 TECPR2 chr14:102906773 3'AG 102906773 Downstream 68bp
chr16 67686392 67686392 1 + G T GBM 67686390 + 67686370 67686410 41 ACCAGGATGACAGTCCTCCACAGAAATGGCCTGAGCTCAGC ACCAGGATGACAGTCCTCCACATAAATGGCCTGAGCTCAGC < 41bp 0.750237414773171 0.405692587520716 0.06740248 0.045119435 prediction 0.500474829546341 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67686390 chr16:67686392 nonsynonymous SNV 0.294 0 23 hm5C_associated_SNPs_65176 0 0 0 0 2 CARMIL2 chr16:67686375 3'AG 67686375 Downstream 18bp
chr16 67686392 67686392 1 + G T GBM 67686390 + 67686370 67686410 41 ACCAGGATGACAGTCCTCCACAGAAATGGCCTGAGCTCAGC ACCAGGATGACAGTCCTCCACATAAATGGCCTGAGCTCAGC < 41bp 0.750237414773171 0.405692587520716 0.06740248 0.045119435 prediction 0.500474829546341 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67686390 chr16:67686392 nonsynonymous SNV 0.294 0 23 hm5C_associated_SNPs_65176 0 0 0 0 2 CARMIL2 chr16:67686441 5'GT 67686441 Upstream 50bp
chr19 4307980 4307980 1 + G T LUAD 4307978 + 4307958 4307998 41 TGGACAGCGAGGACTTTCCTCAGGTGGGTGCCTCTGATGCT TGGACAGCGAGGACTTTCCTCATGTGGGTGCCTCTGATGCT < 41bp 0.75023551784839 0.401836326450808 0.91190326 0.8759286 prediction 0.50047103569678 Functional Loss - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4307978 chr19:4307980 nonsynonymous SNV 0.944 3 23 hm5C_associated_SNPs_65178 0 0 0 0 1 FSD1 chr19:4307980 5'GT 4307980 Upstream 1bp
chr22 18975306 18975306 1 + C T rs117952338 18975304 + 18975284 18975324 41 ATCTTTGACAAGTTCAACTTCACGGGAGCCAGAGTCCCATG ATCTTTGACAAGTTCAACTTCATGGGAGCCAGAGTCCCATG < 41bp 0.750230046767062 0.499437700194723 0.19243285 0.2951949 prediction 0.500460093534124 Functional Loss - DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18975304 chr22:18975306 . . 0 23 hm5C_associated_SNPs_65180 0 0 0 1 1 DGCR5 chr22:18975270 3'AG 18975270 Downstream 37bp
chr3 106959893 106959893 1 + G C rs139177006 106959889 + 106959869 106959909 41 GGTACCAGTGCCGCTGGGCACACTGGCTTCACGCCGGCTCC GGTACCAGTGCCGCTGGGCACACTCGCTTCACGCCGGCTCC < 41bp 0.750224404689817 0.467806979233918 0.13512483 0.061774492 prediction 0.500448809379634 Functional Loss - DUBR ENSG00000243701 ncRNA_exonic Human lincRNA chr3:106959889 chr3:106959893 . . 0 25 hm5C_associated_SNPs_65183 0 0 1 0 1 DUBR chr3:106959934 5'GT 106959934 Upstream 42bp
chr11 65043426 65043426 1 + C T UCEC 65043424 + 65043404 65043444 41 AACAAAAAGGAGTGTGTCAACTCGTAGCCCCCATCAGCTAC AACAAAAAGGAGTGTGTCAACTTGTAGCCCCCATCAGCTAC < 41bp 0.813623457940331 0.563399260419655 0.20460281 0.123478085 prediction 0.500448395041352 Functional Loss - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65043424 chr11:65043426 nonsynonymous SNV 0.288 2 23 hm5C_associated_SNPs_65184 0 0 1 0 1 POLA2 chr11:65043469 5'GT 65043469 Upstream 44bp
chr19 22785317 22785317 1 + G T HNSC 22785315 + 22785295 22785335 41 AGGGTGCCATGGAGAAACTGCAGGTGAGTGAGTCTCTTCTG AGGGTGCCATGGAGAAACTGCATGTGAGTGAGTCTCTTCTG < 41bp 0.750221588823619 0.418003592145545 0.9109367 0.7292441 prediction 0.500443177647238 Functional Loss - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22785315 chr19:22785317 . . 0 23 hm5C_associated_SNPs_65186 0 0 0 3 1 GOLGA2P9 chr19:22785317 5'GT 22785317 Upstream 1bp
chr4 36245791 36245791 1 + G T rs560759725 36245788 + 36245768 36245808 41 CGGCCCAGCCTTCCCGAGGCCCCGGGTACTCGCCTTGCGCT CGGCCCAGCCTTCCCGAGGCCCCTGGTACTCGCCTTGCGCT < 41bp 0.750217382303285 0.389002566366697 0.35405135 0.22433257 prediction 0.500434764606571 Functional Loss - LOC439933 ENSG00000247193 ncRNA_exonic Human antisense chr4:36245788 chr4:36245791 . . 0 24 hm5C_associated_SNPs_65188 0 0 0 0 1 LOC439933 chr4:36245833 5'GT 36245833 Upstream 43bp
chr13 25280511 25280511 1 + G T LUAD 25280509 + 25280489 25280529 41 AGGACATGAGCTCAGAACAGCTGGATGAGATCTTAGCCAAC AGGACATGAGCTCAGAACAGCTTGATGAGATCTTAGCCAAC < 41bp 0.750216423931627 0.408604477098463 0.868759 0.394184 prediction 0.500432847863253 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25280509 chr13:25280511 synonymous SNV . 0 23 hm5C_associated_SNPs_65189 0 0 0 0 2 ATP12A chr13:25280451 3'AG 25280451 Downstream 61bp
chr13 25280511 25280511 1 + G T LUAD 25280509 + 25280489 25280529 41 AGGACATGAGCTCAGAACAGCTGGATGAGATCTTAGCCAAC AGGACATGAGCTCAGAACAGCTTGATGAGATCTTAGCCAAC < 41bp 0.750216423931627 0.408604477098463 0.868759 0.394184 prediction 0.500432847863253 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25280509 chr13:25280511 synonymous SNV . 0 23 hm5C_associated_SNPs_65189 0 0 0 0 2 ATP12A chr13:25280601 5'GT 25280601 Upstream 91bp
chr9 34249862 34249862 1 + C T HNSC 34249860 + 34249840 34249880 41 TCTGAACTGCAGATGCTGTCCCCCAGCGAGCGGCAGTGTGT TCTGAACTGCAGATGCTGTCCCTCAGCGAGCGGCAGTGTGT < 41bp 0.750214485691547 0.47218997047775 0.12921986 0.08704665 prediction 0.500428971383093 Functional Loss - UBAP1 ENSG00000165006 CDS Human protein_coding chr9:34249860 chr9:34249862 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_65191 0 0 1 0 2 UBAP1 chr9:34249777 3'AG 34249777 Downstream 86bp
chr9 34249862 34249862 1 + C T HNSC 34249860 + 34249840 34249880 41 TCTGAACTGCAGATGCTGTCCCCCAGCGAGCGGCAGTGTGT TCTGAACTGCAGATGCTGTCCCTCAGCGAGCGGCAGTGTGT < 41bp 0.750214485691547 0.47218997047775 0.12921986 0.08704665 prediction 0.500428971383093 Functional Loss - UBAP1 ENSG00000165006 CDS Human protein_coding chr9:34249860 chr9:34249862 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_65191 0 0 1 0 2 UBAP1 chr9:34249959 5'GT 34249959 Upstream 98bp
chr1 45243396 45243396 1 + C T COAD 45243394 + 45243374 45243414 41 CATCGTGCTCATCGACAGCACACCGTACCGACAGTGGTACG CATCGTGCTCATCGACAGCACATCGTACCGACAGTGGTACG < 41bp 0.750210750448022 0.488987341986369 0.012247145 0.03087923 prediction 0.500421500896043 Functional Loss - RPS8 ENSG00000142937 CDS Human protein_coding chr1:45243394 chr1:45243396 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_65193 0 0 1 0 1 RPS8 chr1:45243461 5'GT 45243461 Upstream 66bp
chr20 33026406 33026406 1 + C T STAD 33026404 + 33026384 33026424 41 TTCTAGACCTCCAAGACCTTCACGACCACCACCACCCACCC TTCTAGACCTCCAAGACCTTCATGACCACCACCACCCACCC < 41bp 0.825867513786341 0.575663874394915 0.11393955 0.053457648 prediction 0.500407278782853 Functional Loss - ITCH ENSG00000078747 CDS Human protein_coding chr20:33026404 chr20:33026406 stopgain 0.996 0 23 hm5C_associated_SNPs_65194 0 0 1 0 1 ITCH chr20:33026436 5'GT 33026436 Upstream 31bp
chr19 19166153 19166153 1 + G T HNSC 19166150 + 19166130 19166170 41 GAAAGATGCTATTGTCCGTGCTGGTGGGACGGAGTCCATCG GAAAGATGCTATTGTCCGTGCTGTTGGGACGGAGTCCATCG < 41bp 0.750199864205277 0.350387210455766 0.26875824 0.15924686 prediction 0.500399728410554 Functional Loss - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19166150 chr19:19166153 nonsynonymous SNV 0.016 4 24 hm5C_associated_SNPs_65195 0 0 1 0 2 ARMC6 chr19:19166074 3'AG 19166074 Downstream 80bp
chr19 19166153 19166153 1 + G T HNSC 19166150 + 19166130 19166170 41 GAAAGATGCTATTGTCCGTGCTGGTGGGACGGAGTCCATCG GAAAGATGCTATTGTCCGTGCTGTTGGGACGGAGTCCATCG < 41bp 0.750199864205277 0.350387210455766 0.26875824 0.15924686 prediction 0.500399728410554 Functional Loss - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19166150 chr19:19166153 nonsynonymous SNV 0.016 4 24 hm5C_associated_SNPs_65195 0 0 1 0 2 ARMC6 chr19:19166205 5'GT 19166205 Upstream 53bp
chr2 61009110 61009110 1 + C T COAD 61009108 + 61009088 61009128 41 GTATAATGTGTCCACATCAACTCGAACAGTAATGGTAGAAG GTATAATGTGTCCACATCAACTTGAACAGTAATGGTAGAAG < 41bp 0.750196172174411 0.455077414898241 0.41976476 0.201861 prediction 0.500392344348822 Functional Loss - PAPOLG ENSG00000115421 CDS Human protein_coding chr2:61009108 chr2:61009110 stopgain 1.000 1 23 hm5C_associated_SNPs_65197 0 0 1 0 1 PAPOLG chr2:61009140 5'GT 61009140 Upstream 31bp
chr14 78397967 78397967 1 + T C UCEC 78397966 + 78397946 78397986 41 TCTTGAAGACCAACGACCTGCTGCGTGGCATTGAGGCCGCC TCTTGAAGACCAACGACCTGCCGCGTGGCATTGAGGCCGCC < 41bp 0.758590413199653 0.508397548424158 0.09725919 0.09586832 prediction 0.500385729550989 Functional Loss - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78397966 chr14:78397967 nonsynonymous SNV 0.886 4 22 hm5C_associated_SNPs_65202 0 0 0 0 1 ADCK1 chr14:78398054 5'GT 78398054 Upstream 88bp
chr3 44761808 44761808 1 + G T UCEC 44761806 + 44761786 44761826 41 CATTAGAAGAGAGACTTGTCCAGGTGAGTGAGCAAGGGACA CATTAGAAGAGAGACTTGTCCATGTGAGTGAGCAAGGGACA < 41bp 0.750192538844048 0.413890434161749 0.79820514 0.29355788 prediction 0.500385077688095 Functional Loss - ZNF502 ENSG00000196653 CDS Human protein_coding chr3:44761806 chr3:44761808 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_65203 0 0 0 0 1 ZNF502 chr3:44761808 5'GT 44761808 Upstream 1bp
chr19 22785287 22785287 1 + G T LUSC 22785285 + 22785265 22785305 41 CTGTGTGTGGGGGGACCCACCGGGCCCTGCAGGGTGCCATG CTGTGTGTGGGGGGACCCACCGTGCCCTGCAGGGTGCCATG < 41bp 0.750185519109702 0.407696810729055 0.89473534 0.1927222 prediction 0.500371038219403 Functional Loss - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22785285 chr19:22785287 . . 0 23 hm5C_associated_SNPs_65206 0 0 0 0 1 GOLGA2P9 chr19:22785317 5'GT 22785317 Upstream 31bp
chr7 7636041 7636041 1 + C T UCEC 7636039 + 7636019 7636059 41 TGGCTGTCGAAAACCACTTCCTCGATGTGCGCTTTGTCTCA TGGCTGTCGAAAACCACTTCCTTGATGTGCGCTTTGTCTCA < 41bp 0.845197001913264 0.595012367539686 0.92062706 0.1340195 prediction 0.500369268747157 Functional Loss - MIOS ENSG00000164654 CDS Human protein_coding chr7:7636039 chr7:7636041 stopgain 1.000 1 23 hm5C_associated_SNPs_65207 0 0 1 0 1 MIOS chr7:7636092 5'GT 7636092 Upstream 52bp
chr8 42173783 42173783 1 + C T UCEC 42173781 + 42173761 42173801 41 ACTGATGCTGATGTGGCACCCCCGACAGAGGGGCACGGATC ACTGATGCTGATGTGGCACCCCTGACAGAGGGGCACGGATC < 41bp 0.78295164922392 0.53276792820046 0.06393832 0.058362782 prediction 0.500367442046919 Functional Loss - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42173781 chr8:42173783 stopgain 0.808 1 23 hm5C_associated_SNPs_65208 0 0 1 0 1 IKBKB chr8:42173857 5'GT 42173857 Upstream 75bp
chr6 116559441 116559441 1 + G T LUAD 116559439 + 116559419 116559459 41 GTCCTCATCCTGGAAGAACTCAGAGGGGATGAAGGCACGAG GTCCTCATCCTGGAAGAACTCATAGGGGATGAAGGCACGAG < 41bp 0.886574346573921 0.636394661259099 0.900266 0.41021624 prediction 0.500359370629643 Functional Loss - NT5DC1 ENSG00000178425 CDS Human protein_coding chr6:116559439 chr6:116559441 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_65209 0 0 1 0 2 NT5DC1 chr6:116559350 3'AG 116559350 Downstream 92bp
chr6 116559441 116559441 1 + G T LUAD 116559439 + 116559419 116559459 41 GTCCTCATCCTGGAAGAACTCAGAGGGGATGAAGGCACGAG GTCCTCATCCTGGAAGAACTCATAGGGGATGAAGGCACGAG < 41bp 0.886574346573921 0.636394661259099 0.900266 0.41021624 prediction 0.500359370629643 Functional Loss - NT5DC1 ENSG00000178425 CDS Human protein_coding chr6:116559439 chr6:116559441 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_65209 0 0 1 0 2 NT5DC1 chr6:116559511 5'GT 116559511 Upstream 71bp
chr9 105757676 105757676 1 + G T COAD 105757673 + 105757653 105757693 41 AGTGGGGAAAATGTCTCTCCCAAGATTGTAAGTCAAATTTT AGTGGGGAAAATGTCTCTCCCAATATTGTAAGTCAAATTTT < 41bp 0.750179430075693 0.402718800220003 0.29407448 0.14250574 prediction 0.500358860151385 Functional Loss - CYLC2 ENSG00000155833 CDS Human protein_coding chr9:105757673 chr9:105757676 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_65211 0 0 0 0 1 CYLC2 chr9:105757679 5'GT 105757679 Upstream 4bp
chrX 151819033 151819033 1 + G T LUAD 151819030 + 151819010 151819050 41 AACTATGATTCCTCTGCAGCCAGGGTGACAATTGGTAGGTT AACTATGATTCCTCTGCAGCCAGTGTGACAATTGGTAGGTT < 41bp 0.75017662505184 0.353099928812498 0.89987254 0.6662116 prediction 0.500353250103679 Functional Loss - GABRQ ENSG00000147402 CDS Human other chrX:151819030 chrX:151819033 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_65213 0 0 0 0 1 GABRQ chrX:151819043 5'GT 151819043 Upstream 11bp
chr17 16593998 16593998 1 + G T LUAD 16593995 + 16593975 16594015 41 TGCCCGGTCGGGCGACGTCCCTGGGGTGGAGCACATCTTAG TGCCCGGTCGGGCGACGTCCCTGTGGTGGAGCACATCTTAG < 41bp 0.914369461706722 0.66419315823031 0.9058166 0.33151153 prediction 0.500352606952825 Functional Loss - CCDC144A ENSG00000170160;ENSG00000266302 CDS Human other chr17:16593995 chr17:16593998 nonsynonymous SNV 0.000 3 24 hm5C_associated_SNPs_65214 0 0 0 0 1 CCDC144A chr17:16594058 5'GT 16594058 Upstream 61bp
chr22 50957142 50957142 1 + C T UCEC 50957140 + 50957120 50957160 41 GCAGGAGCCCTGTCCCAGCACTCGGCTTCTCCCAGGAGCCA GCAGGAGCCCTGTCCCAGCACTTGGCTTCTCCCAGGAGCCA < 41bp 0.771118115605225 0.520946358121327 0.08429867 0.0680193 prediction 0.500343514967795 Functional Loss - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50957140 chr22:50957142 synonymous SNV . 0 23 hm5C_associated_SNPs_65215 0 0 1 0 2 NCAPH2 chr22:50957078 3'AG 50957078 Downstream 65bp
chr22 50957142 50957142 1 + C T UCEC 50957140 + 50957120 50957160 41 GCAGGAGCCCTGTCCCAGCACTCGGCTTCTCCCAGGAGCCA GCAGGAGCCCTGTCCCAGCACTTGGCTTCTCCCAGGAGCCA < 41bp 0.771118115605225 0.520946358121327 0.08429867 0.0680193 prediction 0.500343514967795 Functional Loss - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50957140 chr22:50957142 synonymous SNV . 0 23 hm5C_associated_SNPs_65215 0 0 1 0 2 NCAPH2 chr22:50957161 5'GT 50957161 Upstream 20bp
chr14 55241746 55241746 1 + C T UCEC 55241744 + 55241724 55241764 41 GCGCCAGTACCAGATCCCCTCTCGGAACGTCCCTTCCGCCC GCGCCAGTACCAGATCCCCTCTTGGAACGTCCCTTCCGCCC < 41bp 0.799409975965516 0.549240872889916 0.9000155 0.43219355 prediction 0.500338206151199 Functional Loss - SAMD4A ENSG00000020577 CDS Human protein_coding chr14:55241744 chr14:55241746 nonsynonymous SNV 0.540 4 23 hm5C_associated_SNPs_65216 0 0 1 0 1 SAMD4A chr14:55241652 3'AG 55241652 Downstream 95bp
chr2 110065914 110065914 1 + G T rs184622489 110065911 + 110065891 110065931 41 CACATCCAGCCCCACCAACACGGGATGCAAACTAGACGAGA CACATCCAGCCCCACCAACACGGTATGCAAACTAGACGAGA < 41bp 0.750167136130482 0.389987847544863 0.91270995 0.90293837 prediction 0.500334272260964 Functional Loss - SH3RF3 ENSG00000172985 CDS Human protein_coding chr2:110065911 chr2:110065914 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_65218 0 0 0 0 1 SH3RF3 chr2:110065945 5'GT 110065945 Upstream 32bp
chr4 160266387 160266387 1 + A T LUSC 160266383 + 160266363 160266403 41 TTATGAAGATGCCCAAATGGCTCGAAAAGTGAAGCAGTACC TTATGAAGATGCCCAAATGGCTCGTAAAGTGAAGCAGTACC < 41bp 0.75016435128424 0.401935875293206 0.050025165 0.012581408 prediction 0.500328702568479 Functional Loss - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160266383 chr4:160266387 synonymous SNV . 0 25 hm5C_associated_SNPs_65219 0 0 0 0 1 RAPGEF2 chr4:160266481 5'GT 160266481 Upstream 95bp
chr6 117043379 117043379 1 + T C UCEC 117043378 + 117043358 117043398 41 TGTTGGGCCCTTTCTTATCTCTCCGATGGACCCAATGATAA TGTTGGGCCCTTTCTTATCTCCCCGATGGACCCAATGATAA < 41bp 0.791274573690661 0.541112572705083 0.2961629 0.048200488 prediction 0.500324001971155 Functional Loss - KPNA5 ENSG00000196911 CDS Human protein_coding chr6:117043378 chr6:117043379 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_65220 0 0 1 0 2 KPNA5 chr6:117043289 3'AG 117043289 Downstream 91bp
chr6 117043379 117043379 1 + T C UCEC 117043378 + 117043358 117043398 41 TGTTGGGCCCTTTCTTATCTCTCCGATGGACCCAATGATAA TGTTGGGCCCTTTCTTATCTCCCCGATGGACCCAATGATAA < 41bp 0.791274573690661 0.541112572705083 0.2961629 0.048200488 prediction 0.500324001971155 Functional Loss - KPNA5 ENSG00000196911 CDS Human protein_coding chr6:117043378 chr6:117043379 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_65220 0 0 1 0 2 KPNA5 chr6:117043452 5'GT 117043452 Upstream 74bp
chr20 2842729 2842729 1 + T C COAD 2842728 + 2842708 2842748 41 GAGGAAATCTTCAAAATTGCCTCAATGGCCCCCGGGGCGCT GAGGAAATCTTCAAAATTGCCCCAATGGCCCCCGGGGCGCT < 41bp 0.750150393024934 0.49095625021678 0.72066784 0.22137621 prediction 0.500300786049869 Functional Loss - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2842728 chr20:2842729 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_65222 0 0 1 0 2 VPS16 chr20:2842700 3'AG 2842700 Downstream 30bp
chr20 2842729 2842729 1 + T C COAD 2842728 + 2842708 2842748 41 GAGGAAATCTTCAAAATTGCCTCAATGGCCCCCGGGGCGCT GAGGAAATCTTCAAAATTGCCCCAATGGCCCCCGGGGCGCT < 41bp 0.750150393024934 0.49095625021678 0.72066784 0.22137621 prediction 0.500300786049869 Functional Loss - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2842728 chr20:2842729 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_65222 0 0 1 0 2 VPS16 chr20:2842776 5'GT 2842776 Upstream 48bp
chr1 9780197 9780197 1 + C T STAD 9780195 + 9780175 9780215 41 AAGGGCGAGCTGCTGAACCCCACGGGCACTGTGCGCAGTAA AAGGGCGAGCTGCTGAACCCCATGGGCACTGTGCGCAGTAA < 41bp 0.782317859013981 0.532170602124376 0.27753562 0.33572793 prediction 0.500294513779209 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9780195 chr1:9780197 nonsynonymous SNV 0.067 0 23 hm5C_associated_SNPs_65223 0 0 1 0 1 PIK3CD chr1:9780170 3'AG 9780170 Downstream 28bp
chr17 29196272 29196272 1 + C T BLCA 29196270 + 29196250 29196290 41 TTGAATAATTTTTCAGATTTCTCGGGTGGCATAGACTTTAA TTGAATAATTTTTCAGATTTCTTGGGTGGCATAGACTTTAA < 41bp 0.750145117149706 0.476916548092912 0.27323484 0.23723611 prediction 0.500290234299413 Functional Loss - ATAD5 ENSG00000176208 CDS Human protein_coding chr17:29196270 chr17:29196272 nonsynonymous SNV 0.028 0 23 hm5C_associated_SNPs_65224 0 0 1 0 1 ATAD5 chr17:29196266 3'AG 29196266 Downstream 7bp
chr4 1807536 1807536 1 + G A UCEC 1807533 + 1807513 1807553 41 GTAACCTGCGGGAGTTTCTGCGGGCGCGGCGGCCCCCGGGC GTAACCTGCGGGAGTTTCTGCGGACGCGGCGGCCCCCGGGC < 41bp 0.75014126622024 0.498697034226022 0.9261729 0.90288395 prediction 0.500282532440481 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1807533 chr4:1807536 nonsynonymous SNV 0.837 5 24 hm5C_associated_SNPs_65227 0 0 1 0 1 FGFR3 chr4:1807477 3'AG 1807477 Downstream 60bp
chr11 709426 709426 1 + G C CESC 709425 + 709405 709445 41 ACCATGAGCCAGTCCGGGGCCGTGAGCTGCTGCCCGGGTGC ACCATGAGCCAGTCCGGGGCCCTGAGCTGCTGCCCGGGTGC < 41bp 0.750138993713842 0.443514078812184 0.2682475 0.22207853 prediction 0.500277987427684 Functional Loss - EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:709425 chr11:709426 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_65228 0 0 1 0 1 EPS8L2 chr11:709451 5'GT 709451 Upstream 26bp
chr20 62614419 62614419 1 + C T COAD 62614417 + 62614397 62614437 41 CAGCGCCACTGGCTTCACCACGCGGTCAGACATTGGGCCCG CAGCGCCACTGGCTTCACCACGTGGTCAGACATTGGGCCCG < 41bp 0.792287364511833 0.542160026984696 0.8951228 0.90549326 prediction 0.500254675054274 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62614417 chr20:62614419 nonsynonymous SNV 0.927 4 23 hm5C_associated_SNPs_65230 0 0 1 0 1 PRPF6 chr20:62614400 3'AG 62614400 Downstream 20bp
chrX 47518318 47518318 1 - C G LUSC 47518322 - 47518302 47518342 41 TCCCCAGGAGCCCATCATGGCGACGCCCCCTAAGCGGCGGG TCCCCAGGAGCCCATCATGGCGACCCCCCCTAAGCGGCGGG < 41bp 0.750127052956566 0.470225996644616 0.012688249 0.008729368 prediction 0.500254105913133 Functional Loss - UXT ENSG00000126756 CDS Human protein_coding chrX:47518322 chrX:47518318 synonymous SNV . 0 25 hm5C_associated_SNPs_65231 0 0 1 0 2 UXT chrX:47518229 5'GT 47518229 Upstream 90bp
chrX 47518318 47518318 1 - C G LUSC 47518322 - 47518302 47518342 41 TCCCCAGGAGCCCATCATGGCGACGCCCCCTAAGCGGCGGG TCCCCAGGAGCCCATCATGGCGACCCCCCCTAAGCGGCGGG < 41bp 0.750127052956566 0.470225996644616 0.012688249 0.008729368 prediction 0.500254105913133 Functional Loss - UXT ENSG00000126756 CDS Human protein_coding chrX:47518322 chrX:47518318 synonymous SNV . 0 25 hm5C_associated_SNPs_65231 0 0 1 0 2 UXT chrX:47518335 3'AG 47518335 Downstream 18bp
chr19 56515446 56515446 1 + C T STAD 56515444 + 56515424 56515464 41 GCGAACCCTCTCGGAGAAGGCACGGGATGACATGAAAAGTA GCGAACCCTCTCGGAGAAGGCATGGGATGACATGAAAAGTA < 41bp 0.75011910742501 0.494463937393479 0.37627283 0.41022378 prediction 0.500238214850021 Functional Loss - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56515444 chr19:56515446 nonsynonymous SNV 0.003 3 23 hm5C_associated_SNPs_65233 0 0 0 0 1 NLRP5 chr19:56515461 5'GT 56515461 Upstream 16bp
chr2 74757877 74757877 1 + G C BLCA 74757873 + 74757853 74757893 41 GTCCGTGTGAGACTGCTAAGCGGCGACACGTATGAGGCCGT GTCCGTGTGAGACTGCTAAGCGGCCACACGTATGAGGCCGT < 41bp 0.825407260848533 0.575296742253624 0.6806681 0.26493222 prediction 0.500221037189817 Functional Loss - HTRA2 ENSG00000115317 CDS Human protein_coding chr2:74757873 chr2:74757877 nonsynonymous SNV 0.939 4 25 hm5C_associated_SNPs_65234 0 0 1 0 1 HTRA2 chr2:74757948 5'GT 74757948 Upstream 72bp
chr15 22945048 22945048 1 + G T ESCA 22945045 + 22945025 22945065 41 GCCCGCCTTGTGCAGGTGGTCACGGGCTCGGGCCGCCAGGA GCCCGCCTTGTGCAGGTGGTCACTGGCTCGGGCCGCCAGGA < 41bp 0.915083517522 0.664994231726288 0.95902586 0.928216 prediction 0.500178571591424 Functional Loss - CYFIP1 ENSG00000068793 CDS Human other chr15:22945045 chr15:22945048 synonymous SNV . 0 24 hm5C_associated_SNPs_65237 0 0 1 0 1 CYFIP1 chr15:22945040 3'AG 22945040 Downstream 9bp
chr8 22019381 22019381 1 + C T UCEC 22019379 + 22019359 22019399 41 AGAGGTCCTGATGGAGAGCCCGCCGGTGAGTGTGGTTGCGT AGAGGTCCTGATGGAGAGCCCGTCGGTGAGTGTGGTTGCGT < 41bp 0.760832696227957 0.51074515068292 0.07727629 0.06351575 prediction 0.500175091090074 Functional Loss - SFTPC ENSG00000168484 CDS Human protein_coding chr8:22019379 chr8:22019381 nonsynonymous SNV 0.731 4 23 hm5C_associated_SNPs_65238 0 0 0 0 1 SFTPC chr8:22019383 5'GT 22019383 Upstream 3bp
chr11 372901 372901 1 + C T SKCM 372899 + 372879 372919 41 TTTGAGGACTGGTGTGGGGGCGCCGTGGGCCACCTGAGGAG TTTGAGGACTGGTGTGGGGGCGTCGTGGGCCACCTGAGGAG < 41bp 0.750076271587268 0.491657733136376 0.73418194 0.8002971 prediction 0.500152543174536 Functional Loss - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:372899 chr11:372901 nonsynonymous SNV 0.990 1 23 hm5C_associated_SNPs_65243 0 0 1 0 2 B4GALNT4 chr11:372852 3'AG 372852 Downstream 50bp
chr11 372901 372901 1 + C T SKCM 372899 + 372879 372919 41 TTTGAGGACTGGTGTGGGGGCGCCGTGGGCCACCTGAGGAG TTTGAGGACTGGTGTGGGGGCGTCGTGGGCCACCTGAGGAG < 41bp 0.750076271587268 0.491657733136376 0.73418194 0.8002971 prediction 0.500152543174536 Functional Loss - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:372899 chr11:372901 nonsynonymous SNV 0.990 1 23 hm5C_associated_SNPs_65243 0 0 1 0 2 B4GALNT4 chr11:372947 5'GT 372947 Upstream 47bp
chr20 61936897 61936897 1 + C T CESC 61936895 + 61936875 61936915 41 CTCTGGGCGCTTCCTGCTAGCTCGGAGGGAGTTTGTGAGTA CTCTGGGCGCTTCCTGCTAGCTTGGAGGGAGTTTGTGAGTA < 41bp 0.750072773318547 0.495660675079235 0.26709417 0.2585098 prediction 0.500145546637095 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61936895 chr20:61936897 nonsynonymous SNV 0.539 3 23 hm5C_associated_SNPs_65245 0 0 0 0 1 COL20A1 chr20:61936912 5'GT 61936912 Upstream 16bp
chr14 100992260 100992260 1 + C T SKCM 100992258 + 100992238 100992278 41 AGACCTTGGACATCCTGTTCCTCCGGGAAGGCTCCGAGTTC AGACCTTGGACATCCTGTTCCTTCGGGAAGGCTCCGAGTTC < 41bp 0.750072590788799 0.460699696051339 0.08903828 0.093788415 prediction 0.500145181577597 Functional Loss - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100992258 chr14:100992260 synonymous SNV . 0 23 hm5C_associated_SNPs_65246 0 0 0 0 1 WDR25 chr14:100992207 3'AG 100992207 Downstream 54bp
chr19 4359198 4359198 1 + C T HNSC 4359196 + 4359176 4359216 41 TCTACAAGGGTTCCCCTGACCTCGTGAGGCTCCAGGAACCC TCTACAAGGGTTCCCCTGACCTTGTGAGGCTCCAGGAACCC < 41bp 0.781427251776325 0.531355721315484 0.17250803 0.10387701 prediction 0.500143060921681 Functional Loss - MPND ENSG00000008382 CDS Human protein_coding chr19:4359196 chr19:4359198 synonymous SNV . 0 23 hm5C_associated_SNPs_65247 0 0 1 0 1 MPND chr19:4359160 3'AG 4359160 Downstream 39bp
chr15 39884924 39884924 1 + C T UCEC 39884922 + 39884902 39884942 41 GCAAGGGAGATGCCTGTGACCACGATGATGACAACGATGGC GCAAGGGAGATGCCTGTGACCATGATGATGACAACGATGGC < 41bp 0.793776046079184 0.543710357260028 0.10567433 0.106396526 prediction 0.500131377638311 Functional Loss - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39884922 chr15:39884924 synonymous SNV . 0 23 hm5C_associated_SNPs_65250 0 0 1 0 1 THBS1 chr15:39885003 5'GT 39885003 Upstream 80bp
chrX 128926434 128926434 1 + C T CESC 128926432 + 128926412 128926452 41 TCACTCCCAGCCCCTATGACCACGACTCGCTGAAACTGCAG TCACTCCCAGCCCCTATGACCATGACTCGCTGAAACTGCAG < 41bp 0.800985274533357 0.550925370960551 0.09098697 0.06542429 prediction 0.500119807145611 Functional Loss - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128926432 chrX:128926434 synonymous SNV . 0 23 hm5C_associated_SNPs_65251 0 0 0 0 1 SASH3 chrX:128926452 5'GT 128926452 Upstream 19bp
chr11 66372815 66372815 1 + C T STAD 66372813 + 66372793 66372833 41 ACTGGATCTCATTCCAGCACCGCGGAGACCTGGGCAATGTC ACTGGATCTCATTCCAGCACCGTGGAGACCTGGGCAATGTC < 41bp 0.762659578607448 0.512602868587277 0.3575515 0.16262904 prediction 0.500113420040343 Functional Loss - CCS ENSG00000173992 CDS Human protein_coding chr11:66372813 chr11:66372815 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_65253 0 0 1 0 2 CCS chr11:66372810 3'AG 66372810 Downstream 6bp
chr11 66372815 66372815 1 + C T STAD 66372813 + 66372793 66372833 41 ACTGGATCTCATTCCAGCACCGCGGAGACCTGGGCAATGTC ACTGGATCTCATTCCAGCACCGTGGAGACCTGGGCAATGTC < 41bp 0.762659578607448 0.512602868587277 0.3575515 0.16262904 prediction 0.500113420040343 Functional Loss - CCS ENSG00000173992 CDS Human protein_coding chr11:66372813 chr11:66372815 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_65253 0 0 1 0 2 CCS chr11:66372887 5'GT 66372887 Upstream 73bp
chr1 15813853 15813853 1 + C T PRAD 15813851 + 15813831 15813871 41 GTGCATGGCATCGGCAGCCTCACGTCGGTCCTTGGTTGCAA GTGCATGGCATCGGCAGCCTCATGTCGGTCCTTGGTTGCAA < 41bp 0.79387943857713 0.543822912571131 0.071104735 0.10000306 prediction 0.500113052011999 Functional Loss - CELA2B ENSG00000215704 CDS Human protein_coding chr1:15813851 chr1:15813853 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_65254 0 0 0 0 2 CELA2B chr1:15813780 3'AG 15813780 Downstream 74bp
chr1 15813853 15813853 1 + C T PRAD 15813851 + 15813831 15813871 41 GTGCATGGCATCGGCAGCCTCACGTCGGTCCTTGGTTGCAA GTGCATGGCATCGGCAGCCTCATGTCGGTCCTTGGTTGCAA < 41bp 0.79387943857713 0.543822912571131 0.071104735 0.10000306 prediction 0.500113052011999 Functional Loss - CELA2B ENSG00000215704 CDS Human protein_coding chr1:15813851 chr1:15813853 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_65254 0 0 0 0 2 CELA2B chr1:15813932 5'GT 15813932 Upstream 80bp
chr1 154296801 154296801 1 + G T KIRP 154296798 + 154296778 154296818 41 GGGTGCCTGTGGTGGCCCCTCTGGTGGGGGCCACCGTTGGC GGGTGCCTGTGGTGGCCCCTCTGTTGGGGGCCACCGTTGGC < 41bp 0.915591384432483 0.665547333266434 0.24951276 0.0283449 prediction 0.500088102332099 Functional Loss - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154296798 chr1:154296801 nonsynonymous SNV 0.952 2 24 hm5C_associated_SNPs_65259 0 0 0 0 1 AQP10 chr1:154296758 3'AG 154296758 Downstream 44bp
chr1 104163236 104163236 1 + G T UCEC 104163234 + 104163214 104163254 41 CTTTGGTAATGGCCGGGTGACAGAATTCAAGTATGGTGCAA CTTTGGTAATGGCCGGGTGACATAATTCAAGTATGGTGCAA < 41bp 0.799961889281019 0.549917865404584 0.5332635 0.6954486 prediction 0.500088047752869 Functional Loss - AMY2A ENSG00000243480 CDS Human protein_coding chr1:104163234 chr1:104163236 stopgain 0.998 1 23 hm5C_associated_SNPs_65260 0 0 0 0 2 AMY2A chr1:104163173 3'AG 104163173 Downstream 64bp
chr1 104163236 104163236 1 + G T UCEC 104163234 + 104163214 104163254 41 CTTTGGTAATGGCCGGGTGACAGAATTCAAGTATGGTGCAA CTTTGGTAATGGCCGGGTGACATAATTCAAGTATGGTGCAA < 41bp 0.799961889281019 0.549917865404584 0.5332635 0.6954486 prediction 0.500088047752869 Functional Loss - AMY2A ENSG00000243480 CDS Human protein_coding chr1:104163234 chr1:104163236 stopgain 0.998 1 23 hm5C_associated_SNPs_65260 0 0 0 0 2 AMY2A chr1:104163306 5'GT 104163306 Upstream 71bp
chr8 67796189 67796189 1 + G T OV 67796186 + 67796166 67796206 41 ACAAGGAACTGGAAGATTGCCTGGATATTTTAATTATAACA ACAAGGAACTGGAAGATTGCCTGTATATTTTAATTATAACA < 41bp 0.750037984331335 0.397794803291487 0.054496467 0.060988277 prediction 0.500075968662671 Functional Loss - MCMDC2 ENSG00000178460 CDS Human protein_coding chr8:67796186 chr8:67796189 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_65263 0 0 0 0 1 MCMDC2 chr8:67796229 5'GT 67796229 Upstream 41bp
chr6 10621675 10621675 1 + C T COAD 10621673 + 10621653 10621693 41 AAGACAGACACGGAGGCTGCCACGGTGAGGCTCTCGTTCCA AAGACAGACACGGAGGCTGCCATGGTGAGGCTCTCGTTCCA < 41bp 0.797538310711541 0.547500823978329 0.25205958 0.24126458 prediction 0.500074973466423 Functional Loss - GCNT2 ENSG00000111846 CDS Human protein_coding chr6:10621673 chr6:10621675 synonymous SNV . 0 23 hm5C_associated_SNPs_65264 0 0 0 0 2 GCNT2 chr6:10621584 3'AG 10621584 Downstream 92bp
chr6 10621675 10621675 1 + C T COAD 10621673 + 10621653 10621693 41 AAGACAGACACGGAGGCTGCCACGGTGAGGCTCTCGTTCCA AAGACAGACACGGAGGCTGCCATGGTGAGGCTCTCGTTCCA < 41bp 0.797538310711541 0.547500823978329 0.25205958 0.24126458 prediction 0.500074973466423 Functional Loss - GCNT2 ENSG00000111846 CDS Human protein_coding chr6:10621673 chr6:10621675 synonymous SNV . 0 23 hm5C_associated_SNPs_65264 0 0 0 0 2 GCNT2 chr6:10621676 5'GT 10621676 Upstream 2bp
chr21 18937762 18937762 1 + C T STAD 18937760 + 18937740 18937780 41 TTGCAGGGAAGATGTGCCACCTCCAAAGAGCCGTACGTCCA TTGCAGGGAAGATGTGCCACCTTCAAAGAGCCGTACGTCCA < 41bp 0.75003470498673 0.459115951147298 0.96823937 0.70851207 prediction 0.50006940997346 Functional Loss - CXADR ENSG00000154639 CDS Human protein_coding chr21:18937760 chr21:18937762 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_65265 0 0 1 0 1 CXADR chr21:18937746 3'AG 18937746 Downstream 17bp
chr3 183821996 183821996 1 + G T LUSC 183821993 + 183821973 183822013 41 TGGGATAACCCATTTATCAGCTGGAACCCAGAGGAATGTGA TGGGATAACCCATTTATCAGCTGTAACCCAGAGGAATGTGA < 41bp 0.750033754648848 0.360302529902106 0.055853248 0.08369288 prediction 0.500067509297697 Functional Loss - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183821993 chr3:183821996 nonsynonymous SNV 0.980 4 24 hm5C_associated_SNPs_65266 0 0 0 0 2 HTR3E chr3:183821970 3'AG 183821970 Downstream 27bp
chr3 183821996 183821996 1 + G T LUSC 183821993 + 183821973 183822013 41 TGGGATAACCCATTTATCAGCTGGAACCCAGAGGAATGTGA TGGGATAACCCATTTATCAGCTGTAACCCAGAGGAATGTGA < 41bp 0.750033754648848 0.360302529902106 0.055853248 0.08369288 prediction 0.500067509297697 Functional Loss - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183821993 chr3:183821996 nonsynonymous SNV 0.980 4 24 hm5C_associated_SNPs_65266 0 0 0 0 2 HTR3E chr3:183822079 5'GT 183822079 Upstream 84bp
chr8 134232990 134232990 1 + C T COAD 134232988 + 134232968 134233008 41 TCTGGTGCCCCCACCCGCGGCGCGTGAGCATACCTGGCCAC TCTGGTGCCCCCACCCGCGGCGTGTGAGCATACCTGGCCAC < 41bp 0.772451937379979 0.522419598473177 0.29190284 0.37577453 prediction 0.500064677813604 Functional Loss - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134232988 chr8:134232990 synonymous SNV . 0 23 hm5C_associated_SNPs_65267 0 0 0 0 1 WISP1 chr8:134233084 5'GT 134233084 Upstream 95bp
chr4 158283987 158283987 1 + G T LUAD 158283985 + 158283965 158284005 41 CCTCAGTCTGAGCAACGTTGCTGGAGTATTCTACATCCTTG CCTCAGTCTGAGCAACGTTGCTTGAGTATTCTACATCCTTG < 41bp 0.865375381710024 0.615359032221988 0.59056973 0.11016995 prediction 0.500032698976073 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158283985 chr4:158283987 stopgain 0.999 1 23 hm5C_associated_SNPs_65270 0 0 1 3 1 GRIA2 chr4:158283951 3'AG 158283951 Downstream 37bp
chr12 9845688 9845688 1 + C T HNSC 9845686 + 9845666 9845706 41 TGCAAAGGTTTCACAAGTTCCTCGAATGAATCCAAGACCTG TGCAAAGGTTTCACAAGTTCCTTGAATGAATCCAAGACCTG < 41bp 0.781258577335593 0.531258268770625 0.43747032 0.050589234 prediction 0.500000617129936 Functional Loss - CLEC2D ENSG00000069493 CDS Human protein_coding chr12:9845686 chr12:9845688 stopgain 0.001 0 23 hm5C_associated_SNPs_65275 0 0 1 0 2 CLEC2D chr12:9845630 3'AG 9845630 Downstream 59bp
chr12 9845688 9845688 1 + C T HNSC 9845686 + 9845666 9845706 41 TGCAAAGGTTTCACAAGTTCCTCGAATGAATCCAAGACCTG TGCAAAGGTTTCACAAGTTCCTTGAATGAATCCAAGACCTG < 41bp 0.781258577335593 0.531258268770625 0.43747032 0.050589234 prediction 0.500000617129936 Functional Loss - CLEC2D ENSG00000069493 CDS Human protein_coding chr12:9845686 chr12:9845688 stopgain 0.001 0 23 hm5C_associated_SNPs_65275 0 0 1 0 2 CLEC2D chr12:9845711 5'GT 9845711 Upstream 24bp
chr15 40494809 40494809 1 + C T HNSC 40494807 + 40494787 40494827 41 CAGTCCTCCTGCAGATCCCCCACGAGTTTTAGCTCAACGAA CAGTCCTCCTGCAGATCCCCCATGAGTTTTAGCTCAACGAA < 41bp 0.749999037613224 0.47003490643946 0.089173555 0.050231695 prediction 0.499998075226449 Functional Loss - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40494807 chr15:40494809 stopgain 0.166 0 23 hm5C_associated_SNPs_65277 0 0 1 0 2 BUB1B chr15:40494790 3'AG 40494790 Downstream 20bp
chr15 40494809 40494809 1 + C T HNSC 40494807 + 40494787 40494827 41 CAGTCCTCCTGCAGATCCCCCACGAGTTTTAGCTCAACGAA CAGTCCTCCTGCAGATCCCCCATGAGTTTTAGCTCAACGAA < 41bp 0.749999037613224 0.47003490643946 0.089173555 0.050231695 prediction 0.499998075226449 Functional Loss - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40494807 chr15:40494809 stopgain 0.166 0 23 hm5C_associated_SNPs_65277 0 0 1 0 2 BUB1B chr15:40494895 5'GT 40494895 Upstream 87bp
chr1 109756738 109756738 1 + G C BLCA 109756734 + 109756714 109756754 41 GACCAGCTGGTGAAGGCAGACAGCGAGTGGCGACGATGTAA GACCAGCTGGTGAAGGCAGACAGCCAGTGGCGACGATGTAA < 41bp 0.801460917625554 0.551462728395539 0.40240625 0.32969618 prediction 0.499996378460031 Functional Loss - SARS ENSG00000031698 CDS Human protein_coding chr1:109756734 chr1:109756738 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_65278 0 0 1 0 1 SARS chr1:109756750 5'GT 109756750 Upstream 13bp
chr16 230577 230577 1 + A C READ 230573 + 230553 230593 41 GCGTCTACACGACAGAGGCCCTGGAAAGGTGCGGCAGGCTG GCGTCTACACGACAGAGGCCCTGGCAAGGTGCGGCAGGCTG < 41bp 0.904124610594484 0.654129867373581 0.21354711 0.14721969 prediction 0.499989486441806 Functional Loss - HBQ1 ENSG00000086506 CDS Human protein_coding chr16:230573 chr16:230577 nonsynonymous SNV 0.522 2 25 hm5C_associated_SNPs_65280 0 0 0 0 1 HBQ1 chr16:230580 5'GT 230580 Upstream 4bp
chr11 60470914 60470914 1 + G C rs35956659 60470913 + 60470893 60470933 41 TCCATCATGGCGACGGTTCTCGTAGGGGAATACCTGTCTAT TCCATCATGGCGACGGTTCTCCTAGGGGAATACCTGTCTAT < 41bp 0.749970149701729 0.430525029119576 0.8872558 0.058439344 prediction 0.499940299403457 Functional Loss - MS4A8 ENSG00000166959 CDS Human protein_coding chr11:60470913 chr11:60470914 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_65286 0 0 1 0 2 MS4A8 chr11:60470851 3'AG 60470851 Downstream 64bp
chr11 60470914 60470914 1 + G C rs35956659 60470913 + 60470893 60470933 41 TCCATCATGGCGACGGTTCTCGTAGGGGAATACCTGTCTAT TCCATCATGGCGACGGTTCTCCTAGGGGAATACCTGTCTAT < 41bp 0.749970149701729 0.430525029119576 0.8872558 0.058439344 prediction 0.499940299403457 Functional Loss - MS4A8 ENSG00000166959 CDS Human protein_coding chr11:60470913 chr11:60470914 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_65286 0 0 1 0 2 MS4A8 chr11:60470973 5'GT 60470973 Upstream 60bp
chr4 140375544 140375544 1 + G T STAD 140375541 + 140375521 140375561 41 TTCCCCGACCGCACCGAGGCCACGATAGGGGTGGATTTCCG TTCCCCGACCGCACCGAGGCCACTATAGGGGTGGATTTCCG < 41bp 0.905787494669133 0.655821045901615 0.033921987 0.04761675 prediction 0.499932897535036 Functional Loss - RAB33B ENSG00000172007 CDS Human protein_coding chr4:140375541 chr4:140375544 synonymous SNV . 0 24 hm5C_associated_SNPs_65287 0 0 0 0 1 RAB33B chr4:140375598 5'GT 140375598 Upstream 55bp
chr19 10203375 10203375 1 - C G rs150235799 10203376 - 10203356 10203396 41 CTCAACGGTGTGTGGCACCACGGCGGCCACTACCGAAGCCG CTCAACGGTGTGTGGCACCACCGCGGCCACTACCGAAGCCG < 41bp 0.850814889665079 0.600860771089959 0.35217243 0.32952648 prediction 0.499908237150241 Functional Loss - ANGPTL6 ENSG00000130812 CDS Human protein_coding chr19:10203376 chr19:10203375 nonsynonymous SNV 0.038 4 22 hm5C_associated_SNPs_65288 0 0 0 0 1 ANGPTL6 chr19:10203455 3'AG 10203455 Downstream 81bp
chr1 114512727 114512727 1 + G T LGG 114512725 + 114512705 114512745 41 TCCGTTTTGGAGGGGCCTGGCAGAGTTGTGGCAGATGGCAC TCCGTTTTGGAGGGGCCTGGCATAGTTGTGGCAGATGGCAC < 41bp 0.749952220256258 0.398662490030984 0.7990974 0.22292599 prediction 0.499904440512516 Functional Loss - HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114512725 chr1:114512727 nonsynonymous SNV 0.937 3 23 hm5C_associated_SNPs_65289 0 0 1 0 1 HIPK1 chr1:114512819 5'GT 114512819 Upstream 93bp
chr11 129306871 129306871 1 + C T HNSC 129306869 + 129306849 129306889 41 AAGAAGCCCCGCCGGAGTCGCACCATCTTCACCGAGCTGCA AAGAAGCCCCGCCGGAGTCGCATCATCTTCACCGAGCTGCA < 41bp 0.749937011942397 0.464312993986961 0.10431573 0.15157819 prediction 0.499874023884794 Functional Loss - BARX2 ENSG00000043039 CDS Human protein_coding chr11:129306869 chr11:129306871 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_65292 0 0 0 0 1 BARX2 chr11:129306946 5'GT 129306946 Upstream 76bp
chr16 67208257 67208257 1 + T C rs201067296 67208256 + 67208236 67208276 41 AGCGCAGGGTGCGCCGCCTACTGCTGCTGGTGCAGGGCAAG AGCGCAGGGTGCGCCGCCTACCGCTGCTGGTGCAGGGCAAG < 41bp 0.74993531476974 0.497416659102832 0.239326 0.24901065 prediction 0.49987062953948 Functional Loss - NOL3 ENSG00000140939 CDS Human protein_coding chr16:67208256 chr16:67208257 nonsynonymous SNV 0.981 4 22 hm5C_associated_SNPs_65293 0 0 0 0 1 NOL3 chr16:67208243 3'AG 67208243 Downstream 15bp
chr20 32341047 32341047 1 + C T UCEC 32341045 + 32341025 32341065 41 ACCTCCTCCTCCACCTCCTCCACCACTGCCCCCACCGCCAC ACCTCCTCCTCCACCTCCTCCATCACTGCCCCCACCGCCAC < 41bp 0.749934990548341 0.469834438850917 0.07996321 0.05764407 prediction 0.499869981096682 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32341045 chr20:32341047 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_65294 0 0 0 0 1 ZNF341 chr20:32340978 3'AG 32340978 Downstream 70bp
chr16 78062022 78062022 1 + A T STAD 78062018 + 78061998 78062038 41 CCCCAGACAAGGATGGAGATCTGAAGACTCAAATTGAAAAG CCCCAGACAAGGATGGAGATCTGATGACTCAAATTGAAAAG < 41bp 0.864517406086168 0.614585407146449 0.083940774 0.108339846 prediction 0.499863997879437 Functional Loss - CLEC3A ENSG00000166509 CDS Human protein_coding chr16:78062018 chr16:78062022 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_65296 0 0 0 0 2 CLEC3A chr16:78062004 3'AG 78062004 Downstream 19bp
chr16 78062022 78062022 1 + A T STAD 78062018 + 78061998 78062038 41 CCCCAGACAAGGATGGAGATCTGAAGACTCAAATTGAAAAG CCCCAGACAAGGATGGAGATCTGATGACTCAAATTGAAAAG < 41bp 0.864517406086168 0.614585407146449 0.083940774 0.108339846 prediction 0.499863997879437 Functional Loss - CLEC3A ENSG00000166509 CDS Human protein_coding chr16:78062018 chr16:78062022 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_65296 0 0 0 0 2 CLEC3A chr16:78062087 5'GT 78062087 Upstream 66bp
chr11 123448200 123448200 1 + C T STAD 123448198 + 123448178 123448218 41 GAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCAC GAGAAGGGCTCAGATCACTCCTTGGACAAGTCCCCGTCCAC < 41bp 0.812244152817913 0.562315542992073 0.37115583 0.2704683 prediction 0.49985721965168 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123448198 chr11:123448200 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_65297 0 0 1 0 1 GRAMD1B chr11:123448285 5'GT 123448285 Upstream 86bp
chr8 38832595 38832595 1 + C T SKCM 38832593 + 38832573 38832613 41 AGGAGGAATTACAACTTCATCGCCGCGGTGGTGGAGAAGGT AGGAGGAATTACAACTTCATCGTCGCGGTGGTGGAGAAGGT < 41bp 0.749924102819549 0.478354702189114 0.36177367 0.25252396 prediction 0.499848205639098 Functional Loss - HTRA4 ENSG00000169495 CDS Human protein_coding chr8:38832593 chr8:38832595 nonsynonymous SNV 0.841 3 23 hm5C_associated_SNPs_65298 0 0 0 0 2 HTRA4 chr8:38832550 3'AG 38832550 Downstream 46bp
chr8 38832595 38832595 1 + C T SKCM 38832593 + 38832573 38832613 41 AGGAGGAATTACAACTTCATCGCCGCGGTGGTGGAGAAGGT AGGAGGAATTACAACTTCATCGTCGCGGTGGTGGAGAAGGT < 41bp 0.749924102819549 0.478354702189114 0.36177367 0.25252396 prediction 0.499848205639098 Functional Loss - HTRA4 ENSG00000169495 CDS Human protein_coding chr8:38832593 chr8:38832595 nonsynonymous SNV 0.841 3 23 hm5C_associated_SNPs_65298 0 0 0 0 2 HTRA4 chr8:38832649 5'GT 38832649 Upstream 55bp
chr19 15752396 15752396 1 + G T LUSC 15752394 + 15752374 15752414 41 GTTTCCCGCAACCCCCGAAACGGAATTGGTTCTTGGGTCAC GTTTCCCGCAACCCCCGAAACGTAATTGGTTCTTGGGTCAC < 41bp 0.881159177105025 0.631247271455796 0.867702 0.2264972 prediction 0.499823811298457 Functional Loss - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15752394 chr19:15752396 synonymous SNV . 0 23 hm5C_associated_SNPs_65302 0 0 1 0 1 CYP4F3 chr19:15752423 5'GT 15752423 Upstream 28bp
chr1 64102018 64102018 1 + C T rs79097301 64102016 + 64101996 64102036 41 ATTTCCAGCAGACTGGGGTCCGCGGCTTTGCACGGAGCATG ATTTCCAGCAGACTGGGGTCCGTGGCTTTGCACGGAGCATG < 41bp 0.803308094198181 0.553411799150623 0.41703397 0.2958671 prediction 0.499792590095116 Functional Loss - PGM1 ENSG00000079739 CDS Human protein_coding chr1:64102016 chr1:64102018 synonymous SNV . 0 23 hm5C_associated_SNPs_65304 0 0 1 0 1 PGM1 chr1:64102059 5'GT 64102059 Upstream 42bp
chr11 66259196 66259196 1 + C T PAAD 66259194 + 66259174 66259214 41 TCGGGTTCATCGAGAGCTACCGCGACCCCTTTGGTTCCCGA TCGGGTTCATCGAGAGCTACCGTGACCCCTTTGGTTCCCGA < 41bp 0.809414100061918 0.559521094608885 0.24839023 0.15771493 prediction 0.499786010906065 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66259194 chr11:66259196 synonymous SNV . 0 23 hm5C_associated_SNPs_65305 0 0 0 0 2 DPP3 chr11:66259169 3'AG 66259169 Downstream 28bp
chr11 66259196 66259196 1 + C T PAAD 66259194 + 66259174 66259214 41 TCGGGTTCATCGAGAGCTACCGCGACCCCTTTGGTTCCCGA TCGGGTTCATCGAGAGCTACCGTGACCCCTTTGGTTCCCGA < 41bp 0.809414100061918 0.559521094608885 0.24839023 0.15771493 prediction 0.499786010906065 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66259194 chr11:66259196 synonymous SNV . 0 23 hm5C_associated_SNPs_65305 0 0 0 0 2 DPP3 chr11:66259227 5'GT 66259227 Upstream 32bp
chr1 168148409 168148409 1 + G T LUAD 168148407 + 168148387 168148427 41 GACCCACATCATGAAGTCGGCGGATGTGGAGAAGTGAGGCT GACCCACATCATGAAGTCGGCGTATGTGGAGAAGTGAGGCT < 41bp 0.749880866513478 0.416829721964906 0.8690595 0.52015585 prediction 0.499761733026955 Functional Loss - TIPRL ENSG00000143155 CDS Human protein_coding chr1:168148407 chr1:168148409 nonsynonymous SNV 0.988 2 23 hm5C_associated_SNPs_65309 0 0 1 0 1 TIPRL chr1:168148419 5'GT 168148419 Upstream 11bp
chr4 1332933 1332933 1 + A C COAD 1332929 + 1332909 1332949 41 CAAAGAAGTCTTCCACTTCTCACAAGCCGAGAAGGTGTACA CAAAGAAGTCTTCCACTTCTCACACGCCGAGAAGGTGTACA < 41bp 0.749877014178529 0.351888593936075 0.25333613 0.11826417 prediction 0.499754028357057 Functional Loss - MAEA ENSG00000090316 CDS Human protein_coding chr4:1332929 chr4:1332933 nonsynonymous SNV 0.991 4 25 hm5C_associated_SNPs_65310 0 0 1 0 1 MAEA chr4:1332862 3'AG 1332862 Downstream 72bp
chr10 71265996 71265996 1 + G T LUSC 71265994 + 71265974 71266014 41 TCCTGGGCATCCTGCTTCCCCAGGTGGGCAGGCCGTGGGTT TCCTGGGCATCCTGCTTCCCCATGTGGGCAGGCCGTGGGTT < 41bp 0.749862625639288 0.400484763405729 0.8152972 0.10861063 prediction 0.499725251278576 Functional Loss - TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71265994 chr10:71265996 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_65313 0 0 0 0 1 TSPAN15 chr10:71265996 5'GT 71265996 Upstream 1bp
chr8 41355096 41355096 1 + C T rs17656952 41355094 + 41355074 41355114 41 TTTATGCAGAAGCAGAGAAGCTCGGCGGCCAGTCATATCTC TTTATGCAGAAGCAGAGAAGCTTGGCGGCCAGTCATATCTC < 41bp 0.821929847467817 0.572068226072539 0.18883282 0.13123798 prediction 0.499723242790555 Functional Loss - GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355094 chr8:41355096 synonymous SNV . 0 23 hm5C_associated_SNPs_65314 0 0 1 2 2 GOLGA7 chr8:41355028 3'AG 41355028 Downstream 69bp
chr8 41355096 41355096 1 + C T rs17656952 41355094 + 41355074 41355114 41 TTTATGCAGAAGCAGAGAAGCTCGGCGGCCAGTCATATCTC TTTATGCAGAAGCAGAGAAGCTTGGCGGCCAGTCATATCTC < 41bp 0.821929847467817 0.572068226072539 0.18883282 0.13123798 prediction 0.499723242790555 Functional Loss - GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355094 chr8:41355096 synonymous SNV . 0 23 hm5C_associated_SNPs_65314 0 0 1 2 2 GOLGA7 chr8:41355180 5'GT 41355180 Upstream 85bp
chr20 36964027 36964027 1 + C T GBM 36964025 + 36964005 36964045 41 CTACAGAAAGGCTTCCCTCTCCCGACGCCGGCCAGAGTCCA CTACAGAAAGGCTTCCCTCTCCTGACGCCGGCCAGAGTCCA < 41bp 0.749857092401886 0.476712655229375 0.8387938 0.7567719 prediction 0.499714184803771 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36964025 chr20:36964027 nonsynonymous SNV 0.073 4 23 hm5C_associated_SNPs_65315 0 0 0 0 2 BPI chr20:36964000 3'AG 36964000 Downstream 28bp
chr20 36964027 36964027 1 + C T GBM 36964025 + 36964005 36964045 41 CTACAGAAAGGCTTCCCTCTCCCGACGCCGGCCAGAGTCCA CTACAGAAAGGCTTCCCTCTCCTGACGCCGGCCAGAGTCCA < 41bp 0.749857092401886 0.476712655229375 0.8387938 0.7567719 prediction 0.499714184803771 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36964025 chr20:36964027 nonsynonymous SNV 0.073 4 23 hm5C_associated_SNPs_65315 0 0 0 0 2 BPI chr20:36964076 5'GT 36964076 Upstream 50bp
chr7 141418887 141418887 1 + G T READ 141418884 + 141418864 141418904 41 TACTTTAGAGATGTGTTTTACGAGAAACCAACATGGCTTCC TACTTTAGAGATGTGTTTTACGATAAACCAACATGGCTTCC < 41bp 0.749850864885816 0.380234876573616 0.31684893 0.02376169 prediction 0.499701729771633 Functional Loss - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141418884 chr7:141418887 stopgain 1.000 0 24 hm5C_associated_SNPs_65317 0 0 0 0 1 WEE2 chr7:141418872 3'AG 141418872 Downstream 16bp
chr17 61615788 61615788 1 + C T BLCA 61615786 + 61615766 61615806 41 TGCAGGTGCTGAAGGGCTTCCCCGAGTGCCTGCAGGCTGAC TGCAGGTGCTGAAGGGCTTCCCTGAGTGCCTGCAGGCTGAC < 41bp 0.80676788039598 0.556920917310652 0.51560515 0.40426755 prediction 0.499693926170655 Functional Loss - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61615786 chr17:61615788 synonymous SNV . 0 23 hm5C_associated_SNPs_65319 0 0 0 0 1 KCNH6 chr17:61615771 3'AG 61615771 Downstream 18bp
chrX 54836409 54836409 1 + G T UCEC 54836406 + 54836386 54836426 41 CAGGTTCTGGCAGCTGAAAACAAGAGTCTAGCAGCTGACAC CAGGTTCTGGCAGCTGAAAACAATAGTCTAGCAGCTGACAC < 41bp 0.914865429361003 0.665027784653674 0.41242266 0.17180917 prediction 0.499675289414657 Functional Loss - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54836406 chrX:54836409 nonsynonymous SNV 0.937 0 24 hm5C_associated_SNPs_65322 0 0 1 0 1 MAGED2 chrX:54836356 3'AG 54836356 Downstream 54bp
chr20 62724200 62724200 1 + G T LUAD 62724197 + 62724177 62724217 41 ATCTGCTGCTCAATGCCAGCCACGGCGCCTTCCTGCCCCTC ATCTGCTGCTCAATGCCAGCCACTGCGCCTTCCTGCCCCTC < 41bp 0.749835615753515 0.347491225687071 0.14797607 0.3660429 prediction 0.49967123150703 Functional Loss - OPRL1 ENSG00000125510 CDS Human protein_coding chr20:62724197 chr20:62724200 nonsynonymous SNV 0.379 1 24 hm5C_associated_SNPs_65323 0 0 0 0 1 OPRL1 chr20:62724291 5'GT 62724291 Upstream 92bp
chr13 114290892 114290892 1 + G T CESC 114290889 + 114290869 114290909 41 TTGACAACACATTTGAAATCCACGATGACATAGAAGTGCTG TTGACAACACATTTGAAATCCACTATGACATAGAAGTGCTG < 41bp 0.74983269363073 0.370177131822942 0.028317839 0.03871301 prediction 0.499665387261459 Functional Loss - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114290889 chr13:114290892 nonsynonymous SNV 0.980 4 24 hm5C_associated_SNPs_65324 0 0 1 0 1 TFDP1 chr13:114290849 3'AG 114290849 Downstream 44bp
chr7 96639199 96639199 1 + C T rs185805944 96639197 + 96639177 96639217 41 GAGAGCGACCCCCTCCAGGGCTCGGCGGCCCTGTCGCCACG GAGAGCGACCCCCTCCAGGGCTTGGCGGCCCTGTCGCCACG < 41bp 0.767146169055962 0.51731347912993 0.28719062 0.30002218 prediction 0.499665379852065 Functional Loss - DLX6 ENSG00000006377 CDS Human protein_coding chr7:96639197 chr7:96639199 nonsynonymous SNV 0.142 2 23 hm5C_associated_SNPs_65325 0 0 0 0 1 DLX6 chr7:96639108 3'AG 96639108 Downstream 92bp
chr1 28863368 28863368 1 + G T LUAD 28863365 + 28863345 28863385 41 TCCAGGCTGCCTGCTGTCTCCTCGGTGGCTTGTGGGGCCTC TCCAGGCTGCCTGCTGTCTCCTCTGTGGCTTGTGGGGCCTC < 41bp 0.914323059081131 0.664496174746186 0.4175411 0.11193696 prediction 0.499653768669891 Functional Loss - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28863365 chr1:28863368 synonymous SNV . 0 24 hm5C_associated_SNPs_65327 0 0 1 0 1 RCC1 chr1:28863411 5'GT 28863411 Upstream 44bp
chr20 1115866 1115866 1 + G A rs139986096 1115863 + 1115843 1115883 41 GCTAATGTAAGCAGTCCCCACCGGGAGTTCCCCCCTGCTAC GCTAATGTAAGCAGTCCCCACCGAGAGTTCCCCCCTGCTAC < 41bp 0.754937485631594 0.505111405957347 0.927436 0.56723684 prediction 0.499652159348494 Functional Loss - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1115863 chr20:1115866 synonymous SNV . 0 24 hm5C_associated_SNPs_65328 0 0 1 0 1 PSMF1 chr20:1115949 5'GT 1115949 Upstream 84bp
chr3 122422825 122422825 1 + G T READ 122422822 + 122422802 122422842 41 AATGGTAGCACATCTTCACTCAAGGTTGGGCCTGGTTTTGA AATGGTAGCACATCTTCACTCAATGTTGGGCCTGGTTTTGA < 41bp 0.749819999215656 0.367432024278091 0.9272288 0.46681774 prediction 0.499639998431312 Functional Loss - PARP14 ENSG00000173193 CDS Human protein_coding chr3:122422822 chr3:122422825 nonsynonymous SNV 0.182 2 24 hm5C_associated_SNPs_65329 0 0 1 0 1 PARP14 chr3:122422825 5'GT 122422825 Upstream 1bp
chr3 23959451 23959451 1 + C T BLCA 23959449 + 23959429 23959469 41 TGCTGGCAGTACCGCCAGCTCTCTGCTCTCCACAGGGCTCC TGCTGGCAGTACCGCCAGCTCTTTGCTCTCCACAGGGCTCC < 41bp 0.762337212563303 0.512517992590958 0.12804353 0.10681975 prediction 0.49963843994469 Functional Loss - RPL15 ENSG00000174748 CDS Human protein_coding chr3:23959449 chr3:23959451 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_65330 0 0 1 0 1 RPL15 chr3:23959522 5'GT 23959522 Upstream 72bp
chr20 4162601 4162601 1 + C T LUAD 4162599 + 4162579 4162619 41 GCTACCAAGCGCCTGAAGCTCGCCATGATCCAGCAGTACCT GCTACCAAGCGCCTGAAGCTCGTCATGATCCAGCAGTACCT < 41bp 0.803613167481505 0.553795184190146 0.16883028 0.054801434 prediction 0.499635966582718 Functional Loss - SMOX ENSG00000088826 CDS Human protein_coding chr20:4162599 chr20:4162601 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_65331 0 0 0 0 1 SMOX chr20:4162623 5'GT 4162623 Upstream 23bp
chr7 134632279 134632279 1 + G T UCEC 134632277 + 134632257 134632297 41 AGCCGCCCTGGAGGGAGGGCCAGCGTGGACACCAAGGAGGC AGCCGCCCTGGAGGGAGGGCCATCGTGGACACCAAGGAGGC < 41bp 0.749815490396379 0.413285177276631 0.6521001 0.21411133 prediction 0.499630980792758 Functional Loss - CALD1 ENSG00000122786 CDS Human protein_coding chr7:134632277 chr7:134632279 nonsynonymous SNV 0.040 0 23 hm5C_associated_SNPs_65332 0 0 1 0 1 CALD1 chr7:134632259 3'AG 134632259 Downstream 21bp
chr4 77184926 77184926 1 + G T SARC 77184923 + 77184903 77184943 41 AGGACACATGGGCTTATTGTCAGGACACCAGGAAAGGAATG AGGACACATGGGCTTATTGTCAGTACACCAGGAAAGGAATG < 41bp 0.749813183756432 0.478825976272946 0.9236063 0.56461173 prediction 0.499626367512865 Functional Loss - FAM47E;FAM47E-STBD1 ENSG00000189157;ENSG00000272414 CDS Human other chr4:77184923 chr4:77184926 nonsynonymous SNV 0.650 2 24 hm5C_associated_SNPs_65334 0 0 0 0 2 FAM47E;FAM47E-STBD1 chr4:77184857 3'AG 77184857 Downstream 70bp
chr4 77184926 77184926 1 + G T SARC 77184923 + 77184903 77184943 41 AGGACACATGGGCTTATTGTCAGGACACCAGGAAAGGAATG AGGACACATGGGCTTATTGTCAGTACACCAGGAAAGGAATG < 41bp 0.749813183756432 0.478825976272946 0.9236063 0.56461173 prediction 0.499626367512865 Functional Loss - FAM47E;FAM47E-STBD1 ENSG00000189157;ENSG00000272414 CDS Human other chr4:77184923 chr4:77184926 nonsynonymous SNV 0.650 2 24 hm5C_associated_SNPs_65334 0 0 0 0 2 FAM47E;FAM47E-STBD1 chr4:77184996 5'GT 77184996 Upstream 71bp
chr3 37061853 37061853 1 + G T LUSC 37061850 + 37061830 37061870 41 TTAATGTGCACCCCACAAAGCATGAAGTTCACTTCCTGCAC TTAATGTGCACCCCACAAAGCATTAAGTTCACTTCCTGCAC < 41bp 0.749812907842571 0.414116356112451 0.13026407 0.30830657 prediction 0.499625815685141 Functional Loss - MLH1 ENSG00000076242 CDS Human protein_coding chr3:37061850 chr3:37061853 stopgain 0.998 1 24 hm5C_associated_SNPs_65335 0 0 0 0 1 MLH1 chr3:37061801 3'AG 37061801 Downstream 53bp
chr22 18566270 18566270 1 + G T UCEC 18566267 + 18566247 18566287 41 ATGTGGTGGGTGCCTGGCTCCAAGACCCAGCCAATCAAAAC ATGTGGTGGGTGCCTGGCTCCAATACCCAGCCAATCAAAAC < 41bp 0.749812697071137 0.357207886473184 0.19606659 0.06469825 prediction 0.499625394142275 Functional Loss - PEX26 ENSG00000215193 CDS Human protein_coding chr22:18566267 chr22:18566270 nonsynonymous SNV 0.986 3 24 hm5C_associated_SNPs_65336 0 0 1 0 1 PEX26 chr22:18566203 3'AG 18566203 Downstream 68bp
chr17 40095387 40095387 1 + G T COAD 40095385 + 40095365 40095405 41 TGGGGCAGATGGAGGCAGCCCTGCAGAGCCACAGAAAGGAC TGGGGCAGATGGAGGCAGCCCTTCAGAGCCACAGAAAGGAC < 41bp 0.865295440480943 0.615489189376478 0.7564236 0.274732 prediction 0.499612502208931 Functional Loss - TTC25 ENSG00000204815 ncRNA_exonic Human protein_coding chr17:40095385 chr17:40095387 . . 0 23 hm5C_associated_SNPs_65338 0 0 0 0 1 TTC25 chr17:40095425 5'GT 40095425 Upstream 39bp
chr1 16770220 16770220 1 + G T BRCA 16770217 + 16770197 16770237 41 GCCTACATCAAGCTGGAGGACAGGACGTCAGGTAACCGGAA GCCTACATCAAGCTGGAGGACAGTACGTCAGGTAACCGGAA < 41bp 0.916239951858626 0.666434557284075 0.07444736 0.081778705 prediction 0.499610789149102 Functional Loss - NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16770217 chr1:16770220 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_65340 0 0 1 0 2 NECAP2 chr1:16770127 3'AG 16770127 Downstream 94bp
chr1 16770220 16770220 1 + G T BRCA 16770217 + 16770197 16770237 41 GCCTACATCAAGCTGGAGGACAGGACGTCAGGTAACCGGAA GCCTACATCAAGCTGGAGGACAGTACGTCAGGTAACCGGAA < 41bp 0.916239951858626 0.666434557284075 0.07444736 0.081778705 prediction 0.499610789149102 Functional Loss - NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16770217 chr1:16770220 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_65340 0 0 1 0 2 NECAP2 chr1:16770227 5'GT 16770227 Upstream 8bp
chrX 48760269 48760269 1 + G T SARC 48760267 + 48760247 48760287 41 GACTGGCGCTGACACCACAGCAGCTGGGCCCCTCTTCCAGC GACTGGCGCTGACACCACAGCATCTGGGCCCCTCTTCCAGC < 41bp 0.749805019091523 0.432467167718489 0.12481552 0.10016915 prediction 0.499610038183045 Functional Loss - PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48760267 chrX:48760269 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_65341 0 0 1 0 1 PQBP1 chrX:48760205 3'AG 48760205 Downstream 65bp
chr1 110581882 110581882 1 + G T LUAD 110581879 + 110581859 110581899 41 GATGGCTTGGAAGTCACTGCCAGGGAGAAGAGACTCAAGGT GATGGCTTGGAAGTCACTGCCAGTGAGAAGAGACTCAAGGT < 41bp 0.875706680200067 0.625905033966933 0.9414887 0.42493844 prediction 0.499603292466268 Functional Loss - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110581879 chr1:110581882 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_65342 0 0 1 0 2 STRIP1 chr1:110581794 3'AG 110581794 Downstream 89bp
chr1 110581882 110581882 1 + G T LUAD 110581879 + 110581859 110581899 41 GATGGCTTGGAAGTCACTGCCAGGGAGAAGAGACTCAAGGT GATGGCTTGGAAGTCACTGCCAGTGAGAAGAGACTCAAGGT < 41bp 0.875706680200067 0.625905033966933 0.9414887 0.42493844 prediction 0.499603292466268 Functional Loss - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110581879 chr1:110581882 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_65342 0 0 1 0 2 STRIP1 chr1:110581928 5'GT 110581928 Upstream 47bp
chr1 155837764 155837764 1 + C T STAD 155837762 + 155837742 155837782 41 ATCTCCGCCTTCAGATGTGTCACCGGTGGTGGCCGGCCTCA ATCTCCGCCTTCAGATGTGTCATCGGTGGTGGCCGGCCTCA < 41bp 0.792576322767365 0.542782472450428 0.75133455 0.7248036 prediction 0.499587700633874 Functional Loss - SYT11 ENSG00000132718 CDS Human protein_coding chr1:155837762 chr1:155837764 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_65345 0 0 0 0 1 SYT11 chr1:155837756 3'AG 155837756 Downstream 9bp
chr11 44931396 44931396 1 + C T rs200109095 44931394 + 44931374 44931414 41 TGGGGGGCCTGCTCTTTCTGCTCGGCTTCCTGGGCTGCTGC TGGGGGGCCTGCTCTTTCTGCTTGGCTTCCTGGGCTGCTGC < 41bp 0.800653819611019 0.550871973644388 0.3374867 0.33054557 prediction 0.499563691933262 Functional Loss - TSPAN18 ENSG00000157570 CDS Human protein_coding chr11:44931394 chr11:44931396 synonymous SNV . 0 23 hm5C_associated_SNPs_65350 0 0 0 0 1 TSPAN18 chr11:44931450 5'GT 44931450 Upstream 55bp
chr1 110171361 110171361 1 + C T STAD 110171359 + 110171339 110171379 41 GGATGAGTGGGACAAGCTGGCGCGCTGGGCCGTCATGCACC GGATGAGTGGGACAAGCTGGCGTGCTGGGCCGTCATGCACC < 41bp 0.749848006098928 0.500075001934268 0.30406836 0.31994945 prediction 0.49954600832932 Functional Loss - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110171359 chr1:110171361 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_65351 0 0 0 0 2 AMPD2 chr1:110171265 3'AG 110171265 Downstream 97bp
chr1 110171361 110171361 1 + C T STAD 110171359 + 110171339 110171379 41 GGATGAGTGGGACAAGCTGGCGCGCTGGGCCGTCATGCACC GGATGAGTGGGACAAGCTGGCGTGCTGGGCCGTCATGCACC < 41bp 0.749848006098928 0.500075001934268 0.30406836 0.31994945 prediction 0.49954600832932 Functional Loss - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110171359 chr1:110171361 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_65351 0 0 0 0 2 AMPD2 chr1:110171428 5'GT 110171428 Upstream 68bp
chr6 126661502 126661502 1 + G C rs41285260 126661501 + 126661481 126661521 41 TTCTAAAGCGAGTCTTCAAGCGAAAGAAGCCTCAACTTCGT TTCTAAAGCGAGTCTTCAAGCCAAAGAAGCCTCAACTTCGT < 41bp 0.856715521430396 0.606953671179017 0.5383258 0.14471927 prediction 0.499523700502757 Functional Loss - CENPW ENSG00000203760 CDS Human protein_coding chr6:126661501 chr6:126661502 nonsynonymous SNV 0.006 1 22 hm5C_associated_SNPs_65354 0 0 1 0 1 CENPW chr6:126661545 5'GT 126661545 Upstream 44bp
chr5 176863519 176863519 1 + G C rs1130857 176863515 + 176863495 176863535 41 GGGAGCTGGCATGCTGGAGCCGCCGTTCAAGCCTGACGTGA GGGAGCTGGCATGCTGGAGCCGCCCTTCAAGCCTGACGTGA < 41bp 0.799675046738018 0.549917824497493 0.25795949 0.15423563 prediction 0.49951444448105 Functional Loss - GRK6 ENSG00000198055 CDS Human protein_coding chr5:176863515 chr5:176863519 synonymous SNV . 0 25 hm5C_associated_SNPs_65355 0 0 1 0 1 GRK6 chr5:176863531 5'GT 176863531 Upstream 13bp
chr9 124929150 124929150 1 + G C SKCM 124929149 + 124929129 124929169 41 GGAACCCTGTACTTCCCCAGCGGAAGCCAATACGACGCCAT GGAACCCTGTACTTCCCCAGCCGAAGCCAATACGACGCCAT < 41bp 0.860858058705325 0.611103913390995 0.7101618 0.32885522 prediction 0.499508290628658 Functional Loss - MORN5 ENSG00000185681 CDS Human protein_coding chr9:124929149 chr9:124929150 nonsynonymous SNV 0.223 4 22 hm5C_associated_SNPs_65356 0 0 0 0 1 MORN5 chr9:124929194 5'GT 124929194 Upstream 45bp
chr16 815589 815589 1 + G C STAD 815585 + 815565 815605 41 TGCGGGGCCTGCTGCCCGTGCTGGGCCAGCCCATCATCCGC TGCGGGGCCTGCTGCCCGTGCTGGCCCAGCCCATCATCCGC < 41bp 0.853434286913614 0.603690558728553 0.3511107 0.28190187 prediction 0.499487456370123 Functional Loss - MSLN ENSG00000102854 CDS Human protein_coding chr16:815585 chr16:815589 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_65359 0 0 0 0 2 MSLN chr16:815527 3'AG 815527 Downstream 63bp
chr16 815589 815589 1 + G C STAD 815585 + 815565 815605 41 TGCGGGGCCTGCTGCCCGTGCTGGGCCAGCCCATCATCCGC TGCGGGGCCTGCTGCCCGTGCTGGCCCAGCCCATCATCCGC < 41bp 0.853434286913614 0.603690558728553 0.3511107 0.28190187 prediction 0.499487456370123 Functional Loss - MSLN ENSG00000102854 CDS Human protein_coding chr16:815585 chr16:815589 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_65359 0 0 0 0 2 MSLN chr16:815617 5'GT 815617 Upstream 29bp
chr10 74653596 74653596 1 + G T UCEC 74653594 + 74653574 74653614 41 TCTCACCTGCCTCTTCATCACAGGCACCTCCGTGTCACCCG TCTCACCTGCCTCTTCATCACATGCACCTCCGTGTCACCCG < 41bp 0.749740293278685 0.389893027075823 0.30441752 0.07227859 prediction 0.49948058655737 Functional Loss - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74653594 chr10:74653596 nonsynonymous SNV 0.085 1 23 hm5C_associated_SNPs_65360 0 0 0 0 1 OIT3 chr10:74653617 5'GT 74653617 Upstream 22bp
chr12 50347951 50347951 1 + C T CESC 50347949 + 50347929 50347969 41 TGTCCCCAGCTCAGCAACAGCACGACGGCTGGCCAGGCGGT TGTCCCCAGCTCAGCAACAGCATGACGGCTGGCCAGGCGGT < 41bp 0.808045076726832 0.558309660435156 0.253403 0.2179173 prediction 0.499470832583352 Functional Loss - AQP2 ENSG00000167580 CDS Human protein_coding chr12:50347949 chr12:50347951 nonsynonymous SNV 0.299 3 23 hm5C_associated_SNPs_65361 1 0 0 0 1 AQP2 chr12:50347938 3'AG 50347938 Downstream 14bp
chr11 59857931 59857931 1 + G T HNSC 59857928 + 59857908 59857948 41 TTTAAAGCAGGTTATCCATTCTGGGGAGCCATATTTGTGAG TTTAAAGCAGGTTATCCATTCTGTGGAGCCATATTTGTGAG < 41bp 0.74973346798697 0.385960600969033 0.3925579 0.059011966 prediction 0.499466935973941 Functional Loss - MS4A2 ENSG00000149534 CDS Human protein_coding chr11:59857928 chr11:59857931 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_65362 0 0 0 0 1 MS4A2 chr11:59857943 5'GT 59857943 Upstream 13bp
chr19 10747259 10747259 1 + C T BLCA 10747257 + 10747237 10747277 41 TCTCTGCCTTTGGCCGGGCGCTCAGGTGGGCTGGCGTTGCA TCTCTGCCTTTGGCCGGGCGCTTAGGTGGGCTGGCGTTGCA < 41bp 0.749729815029683 0.493683704824913 0.899382 0.90969545 prediction 0.499459630059365 Functional Loss - SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10747257 chr19:10747259 synonymous SNV . 0 23 hm5C_associated_SNPs_65363 0 0 1 0 1 SLC44A2 chr19:10747261 5'GT 10747261 Upstream 3bp
chr19 55175025 55175025 1 + G T LUAD 55175023 + 55175003 55175043 41 CCCCAGGACCCACATGCAGGCAGGTGAGTCTGTCCCCAGCT CCCCAGGACCCACATGCAGGCATGTGAGTCTGTCCCCAGCT < 41bp 0.749725804783979 0.39710142715644 0.8901037 0.2733004 prediction 0.499451609567957 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55175023 chr19:55175025 nonsynonymous SNV 0.444 3 23 hm5C_associated_SNPs_65366 0 0 0 0 2 LILRB4 chr19:55174990 3'AG 55174990 Downstream 36bp
chr19 55175025 55175025 1 + G T LUAD 55175023 + 55175003 55175043 41 CCCCAGGACCCACATGCAGGCAGGTGAGTCTGTCCCCAGCT CCCCAGGACCCACATGCAGGCATGTGAGTCTGTCCCCAGCT < 41bp 0.749725804783979 0.39710142715644 0.8901037 0.2733004 prediction 0.499451609567957 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55175023 chr19:55175025 nonsynonymous SNV 0.444 3 23 hm5C_associated_SNPs_65366 0 0 0 0 2 LILRB4 chr19:55175025 5'GT 55175025 Upstream 1bp
chr17 40716590 40716590 1 + C T SKCM 40716588 + 40716568 40716608 41 GTTGGGGAACCTGCTTCGGCCTCCATATGTAAGCTCCTCTC GTTGGGGAACCTGCTTCGGCCTTCATATGTAAGCTCCTCTC < 41bp 0.833163426892391 0.583441232932216 0.94774604 0.527704 prediction 0.499444387920349 Functional Loss - COASY ENSG00000068120 CDS Human protein_coding chr17:40716588 chr17:40716590 nonsynonymous SNV 0.874 2 23 hm5C_associated_SNPs_65368 0 0 1 0 1 COASY chr17:40716595 5'GT 40716595 Upstream 6bp
chr6 43231036 43231036 1 + C T SKCM 43231034 + 43231014 43231054 41 CCTTCCCACTCACCCCTGCACTCGGGACCCCGCCCTCGACG CCTTCCCACTCACCCCTGCACTTGGGACCCCGCCCTCGACG < 41bp 0.751585348508365 0.501863307411697 0.18719682 0.27602613 prediction 0.499444082193335 Functional Loss - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43231034 chr6:43231036 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_65370 0 0 0 0 1 TTBK1 chr6:43231088 5'GT 43231088 Upstream 53bp
chr5 149927843 149927843 1 + G C HNSC 149927839 + 149927819 149927859 41 ACCTTCCATGAGGTGATTACCGCCGGCTCTGACGCATCCTC ACCTTCCATGAGGTGATTACCGCCCGCTCTGACGCATCCTC < 41bp 0.749715821185638 0.473067566991992 0.9154533 0.2003316 prediction 0.499431642371276 Functional Loss - NDST1 ENSG00000070614 CDS Human protein_coding chr5:149927839 chr5:149927843 nonsynonymous SNV 0.034 1 25 hm5C_associated_SNPs_65371 0 0 0 0 1 NDST1 chr5:149927780 3'AG 149927780 Downstream 64bp
chr8 143569828 143569828 1 + G T LUAD 143569825 + 143569805 143569845 41 TGGGCCAAGGTGCCAGAGGACAGGGTCACTGTGTCCAAGAG TGGGCCAAGGTGCCAGAGGACAGTGTCACTGTGTCCAAGAG < 41bp 0.749705496996981 0.349956461737505 0.8882214 0.18793446 prediction 0.499410993993962 Functional Loss - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143569825 chr8:143569828 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_65373 0 0 0 0 1 ADGRB1 chr8:143569868 5'GT 143569868 Upstream 41bp
chr2 160043511 160043511 1 + G T LUAD 160043508 + 160043488 160043528 41 TCCGCCGCCCTGGCCTCTCTCAGGAATCTCTATACTCCCAA TCCGCCGCCCTGGCCTCTCTCAGTAATCTCTATACTCCCAA < 41bp 0.912023477620242 0.662319311594923 0.943766 0.5078569 prediction 0.499408332050637 Functional Loss - TANC1 ENSG00000115183 CDS Human protein_coding chr2:160043508 chr2:160043511 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_65374 0 0 1 0 2 TANC1 chr2:160043413 3'AG 160043413 Downstream 99bp
chr2 160043511 160043511 1 + G T LUAD 160043508 + 160043488 160043528 41 TCCGCCGCCCTGGCCTCTCTCAGGAATCTCTATACTCCCAA TCCGCCGCCCTGGCCTCTCTCAGTAATCTCTATACTCCCAA < 41bp 0.912023477620242 0.662319311594923 0.943766 0.5078569 prediction 0.499408332050637 Functional Loss - TANC1 ENSG00000115183 CDS Human protein_coding chr2:160043508 chr2:160043511 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_65374 0 0 1 0 2 TANC1 chr2:160043535 5'GT 160043535 Upstream 25bp
chr19 44570267 44570267 1 + G T LUAD 44570264 + 44570244 44570284 41 CTTTTCCAGAAGCAGGACCACATGAAGGGTGGTCCTGCCAG CTTTTCCAGAAGCAGGACCACATTAAGGGTGGTCCTGCCAG < 41bp 0.749699374688467 0.369268007624458 0.31528363 0.30332774 prediction 0.499398749376934 Functional Loss - ZNF223 ENSG00000178386;ENSG00000267022 CDS Human other chr19:44570264 chr19:44570267 stopgain 0.215 0 24 hm5C_associated_SNPs_65375 0 0 1 0 1 ZNF223 chr19:44570217 3'AG 44570217 Downstream 51bp
chr12 132632324 132632324 1 + C T SKCM 132632322 + 132632302 132632342 41 CCCGGGTCACTGGCCAGCACCCCGAGGTGGGTGATGGGGTC CCCGGGTCACTGGCCAGCACCCTGAGGTGGGTGATGGGGTC < 41bp 0.756814299188285 0.507117686110163 0.71263033 0.4271763 prediction 0.499393226156244 Functional Loss - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132632322 chr12:132632324 synonymous SNV . 0 23 hm5C_associated_SNPs_65376 0 0 0 0 1 NOC4L chr12:132632327 5'GT 132632327 Upstream 4bp
chr10 134014423 134014423 1 + C T STAD 134014421 + 134014401 134014441 41 GCTGTGGGCAAGGACAACTTCGCGCTGATCCCCGAGGGCAC GCTGTGGGCAAGGACAACTTCGTGCTGATCCCCGAGGGCAC < 41bp 0.801156000343894 0.551474803593849 0.23404792 0.20466697 prediction 0.499362393500091 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134014421 chr10:134014423 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_65379 0 0 1 0 2 DPYSL4 chr10:134014346 3'AG 134014346 Downstream 78bp
chr10 134014423 134014423 1 + C T STAD 134014421 + 134014401 134014441 41 GCTGTGGGCAAGGACAACTTCGCGCTGATCCCCGAGGGCAC GCTGTGGGCAAGGACAACTTCGTGCTGATCCCCGAGGGCAC < 41bp 0.801156000343894 0.551474803593849 0.23404792 0.20466697 prediction 0.499362393500091 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134014421 chr10:134014423 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_65379 0 0 1 0 2 DPYSL4 chr10:134014487 5'GT 134014487 Upstream 65bp
chr22 24123392 24123392 1 + C T LUAD 24123390 + 24123370 24123410 41 CCCACCCCAGCCAGACGCCCCGCCAGATGCCTGTGAGGCCT CCCACCCCAGCCAGACGCCCCGTCAGATGCCTGTGAGGCCT < 41bp 0.749679452772639 0.486096287347502 0.3943585 0.15687844 prediction 0.499358905545277 Functional Loss - MMP11 ENSG00000099953 CDS Human protein_coding chr22:24123390 chr22:24123392 nonsynonymous SNV 0.741 3 23 hm5C_associated_SNPs_65380 0 0 1 1 1 MMP11 chr22:24123380 3'AG 24123380 Downstream 13bp
chr2 109066134 109066134 1 + G C BLCA 109066133 + 109066113 109066153 41 TCACCAGCTACCCCTGGGACCGGGAAATCTAAGGTGAAGAG TCACCAGCTACCCCTGGGACCCGGAAATCTAAGGTGAAGAG < 41bp 0.848884478918883 0.59921779159768 0.86446786 0.42981967 prediction 0.499333374642406 Functional Loss - GCC2 ENSG00000135968 CDS Human protein_coding chr2:109066133 chr2:109066134 nonsynonymous SNV 0.515 2 22 hm5C_associated_SNPs_65387 0 0 1 0 2 GCC2 chr2:109066089 3'AG 109066089 Downstream 46bp
chr2 109066134 109066134 1 + G C BLCA 109066133 + 109066113 109066153 41 TCACCAGCTACCCCTGGGACCGGGAAATCTAAGGTGAAGAG TCACCAGCTACCCCTGGGACCCGGAAATCTAAGGTGAAGAG < 41bp 0.848884478918883 0.59921779159768 0.86446786 0.42981967 prediction 0.499333374642406 Functional Loss - GCC2 ENSG00000135968 CDS Human protein_coding chr2:109066133 chr2:109066134 nonsynonymous SNV 0.515 2 22 hm5C_associated_SNPs_65387 0 0 1 0 2 GCC2 chr2:109066145 5'GT 109066145 Upstream 12bp
chr5 36679892 36679892 1 + C T COAD 36679890 + 36679870 36679910 41 ACTCCTCTACTTCTTGGTAACACGGAAAAACCCTTGGGTTT ACTCCTCTACTTCTTGGTAACATGGAAAAACCCTTGGGTTT < 41bp 0.795782321278739 0.54612379432539 0.24557099 0.33493012 prediction 0.499317053906699 Functional Loss - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36679890 chr5:36679892 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_65392 0 0 0 0 1 SLC1A3 chr5:36679962 5'GT 36679962 Upstream 71bp
chr16 30012333 30012333 1 + C T SKCM 30012331 + 30012311 30012351 41 ACAGGGTTTCCCCTTCAGGCCTCCGGGGTCCCCTCCCCATA ACAGGGTTTCCCCTTCAGGCCTTCGGGGTCCCCTCCCCATA < 41bp 0.749652176279427 0.496963911406308 0.20644057 0.15718785 prediction 0.499304352558855 Functional Loss - INO80E ENSG00000169592 CDS Human protein_coding chr16:30012331 chr16:30012333 nonsynonymous SNV 0.978 4 23 hm5C_associated_SNPs_65395 0 0 1 0 2 INO80E chr16:30012250 3'AG 30012250 Downstream 84bp
chr16 30012333 30012333 1 + C T SKCM 30012331 + 30012311 30012351 41 ACAGGGTTTCCCCTTCAGGCCTCCGGGGTCCCCTCCCCATA ACAGGGTTTCCCCTTCAGGCCTTCGGGGTCCCCTCCCCATA < 41bp 0.749652176279427 0.496963911406308 0.20644057 0.15718785 prediction 0.499304352558855 Functional Loss - INO80E ENSG00000169592 CDS Human protein_coding chr16:30012331 chr16:30012333 nonsynonymous SNV 0.978 4 23 hm5C_associated_SNPs_65395 0 0 1 0 2 INO80E chr16:30012361 5'GT 30012361 Upstream 29bp
chrX 70612510 70612510 1 + C T ESCA 70612508 + 70612488 70612528 41 GTGACTGGGGTGGCAGATCCCACGGGGTGTGGTGAAGGATT GTGACTGGGGTGGCAGATCCCATGGGGTGTGGTGAAGGATT < 41bp 0.78549264851426 0.535844281092982 0.8856816 0.8861019 prediction 0.499296734842555 Functional Loss - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70612508 chrX:70612510 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_65397 0 0 1 0 2 TAF1 chrX:70612419 3'AG 70612419 Downstream 92bp
chrX 70612510 70612510 1 + C T ESCA 70612508 + 70612488 70612528 41 GTGACTGGGGTGGCAGATCCCACGGGGTGTGGTGAAGGATT GTGACTGGGGTGGCAGATCCCATGGGGTGTGGTGAAGGATT < 41bp 0.78549264851426 0.535844281092982 0.8856816 0.8861019 prediction 0.499296734842555 Functional Loss - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70612508 chrX:70612510 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_65397 0 0 1 0 2 TAF1 chrX:70612568 5'GT 70612568 Upstream 59bp
chr12 83526012 83526012 1 + G T LUAD 83526010 + 83525990 83526030 41 ATCCGGCTGCTTTGATGAACCTGGGAGCCATTCTGCACCTC ATCCGGCTGCTTTGATGAACCTTGGAGCCATTCTGCACCTC < 41bp 0.749643320956713 0.439668048059442 0.2129609 0.034148604 prediction 0.499286641913425 Functional Loss - TMTC2 ENSG00000179104 CDS Human protein_coding chr12:83526010 chr12:83526012 synonymous SNV . 0 23 hm5C_associated_SNPs_65398 0 0 1 0 1 TMTC2 chr12:83525989 3'AG 83525989 Downstream 24bp
chr10 86014178 86014178 1 + G T LUAD 86014176 + 86014156 86014196 41 ACAGTCTCATGGAGCAGAAACTGGGGAAGAGTGGCCATCTC ACAGTCTCATGGAGCAGAAACTTGGGAAGAGTGGCCATCTC < 41bp 0.886360382500811 0.636720621112729 0.92241263 0.72441953 prediction 0.499279522776165 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86014176 chr10:86014178 synonymous SNV . 0 23 hm5C_associated_SNPs_65399 0 0 0 0 2 RGR chr10:86014082 3'AG 86014082 Downstream 97bp
chr10 86014178 86014178 1 + G T LUAD 86014176 + 86014156 86014196 41 ACAGTCTCATGGAGCAGAAACTGGGGAAGAGTGGCCATCTC ACAGTCTCATGGAGCAGAAACTTGGGAAGAGTGGCCATCTC < 41bp 0.886360382500811 0.636720621112729 0.92241263 0.72441953 prediction 0.499279522776165 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86014176 chr10:86014178 synonymous SNV . 0 23 hm5C_associated_SNPs_65399 0 0 0 0 2 RGR chr10:86014199 5'GT 86014199 Upstream 22bp
chr2 121036307 121036307 1 + G C BLCA 121036306 + 121036286 121036326 41 AAGGTGATCATGGTTGGCAGCGGAGGCGTTGGCAAGTCAGC AAGGTGATCATGGTTGGCAGCCGAGGCGTTGGCAAGTCAGC < 41bp 0.749635571812791 0.443294247787517 0.9261718 0.83559036 prediction 0.499271143625583 Functional Loss - RALB ENSG00000144118 CDS Human protein_coding chr2:121036306 chr2:121036307 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_65400 0 0 1 0 2 RALB chr2:121036344 5'GT 121036344 Upstream 38bp
chr2 121036307 121036307 1 + G C BLCA 121036306 + 121036286 121036326 41 AAGGTGATCATGGTTGGCAGCGGAGGCGTTGGCAAGTCAGC AAGGTGATCATGGTTGGCAGCCGAGGCGTTGGCAAGTCAGC < 41bp 0.749635571812791 0.443294247787517 0.9261718 0.83559036 prediction 0.499271143625583 Functional Loss - RALB ENSG00000144118 CDS Human protein_coding chr2:121036306 chr2:121036307 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_65400 0 0 1 0 2 RALB chr2:121036354 5'GT 121036354 Upstream 48bp
chr9 80881427 80881427 1 + C T SKCM 80881425 + 80881405 80881445 41 CTTTCCTGTCCCAGTTTCTACTCCAGAGGGCTTAGGAACTT CTTTCCTGTCCCAGTTTCTACTTCAGAGGGCTTAGGAACTT < 41bp 0.749633694215317 0.480588006879842 0.9587854 0.29453978 prediction 0.499267388430633 Functional Loss - CEP78 ENSG00000148019 CDS Human protein_coding chr9:80881425 chr9:80881427 nonsynonymous SNV 0.075 0 23 hm5C_associated_SNPs_65401 0 0 1 0 1 CEP78 chr9:80881358 3'AG 80881358 Downstream 70bp
chr14 100995545 100995545 1 + G T UCEC 100995542 + 100995522 100995562 41 CGGCGGCGCTATGAAGGGCACAAGGTACTTCTGTCCTTGTC CGGCGGCGCTATGAAGGGCACAATGTACTTCTGTCCTTGTC < 41bp 0.749622898679159 0.353635181006694 0.79553705 0.20713013 prediction 0.499245797358318 Functional Loss - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100995542 chr14:100995545 nonsynonymous SNV 0.992 2 24 hm5C_associated_SNPs_65403 0 0 0 0 1 WDR25 chr14:100995545 5'GT 100995545 Upstream 1bp
chr7 89790129 89790129 1 + C T STAD 89790127 + 89790107 89790147 41 TTTCCTTTGTAGCATAAGGACACGGGAGAGACCAGCATGCT TTTCCTTTGTAGCATAAGGACATGGGAGAGACCAGCATGCT < 41bp 0.779286534290313 0.529681900291545 0.23461127 0.40609372 prediction 0.499209267997535 Functional Loss - STEAP1 ENSG00000164647 CDS Human protein_coding chr7:89790127 chr7:89790129 nonsynonymous SNV 0.487 0 23 hm5C_associated_SNPs_65406 0 0 0 0 1 STEAP1 chr7:89790119 3'AG 89790119 Downstream 11bp
chr10 25885651 25885651 1 + G T LUAD 25885648 + 25885628 25885668 41 TGAGCTAGACATGGGCCGATCTGGATCCTACCTGAACAGCA TGAGCTAGACATGGGCCGATCTGTATCCTACCTGAACAGCA < 41bp 0.749603628018122 0.367865611535576 0.14897522 0.083063185 prediction 0.499207256036244 Functional Loss - GPR158 ENSG00000151025 CDS Human protein_coding chr10:25885648 chr10:25885651 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_65407 0 0 0 0 2 GPR158 chr10:25885572 3'AG 25885572 Downstream 80bp
chr10 25885651 25885651 1 + G T LUAD 25885648 + 25885628 25885668 41 TGAGCTAGACATGGGCCGATCTGGATCCTACCTGAACAGCA TGAGCTAGACATGGGCCGATCTGTATCCTACCTGAACAGCA < 41bp 0.749603628018122 0.367865611535576 0.14897522 0.083063185 prediction 0.499207256036244 Functional Loss - GPR158 ENSG00000151025 CDS Human protein_coding chr10:25885648 chr10:25885651 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_65407 0 0 0 0 2 GPR158 chr10:25885718 5'GT 25885718 Upstream 68bp
chr17 40940182 40940182 1 + G T GBM 40940179 + 40940159 40940199 41 ATCCATTCCACGTTCTGGCCCTGGAAGTGACTTTTCCCCCG ATCCATTCCACGTTCTGGCCCTGTAAGTGACTTTTCCCCCG < 41bp 0.749599509028647 0.351154948726217 0.1365346 0.029541701 prediction 0.499199018057293 Functional Loss - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40940179 chr17:40940182 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_65408 0 0 1 0 2 WNK4 chr17:40940148 3'AG 40940148 Downstream 35bp
chr17 40940182 40940182 1 + G T GBM 40940179 + 40940159 40940199 41 ATCCATTCCACGTTCTGGCCCTGGAAGTGACTTTTCCCCCG ATCCATTCCACGTTCTGGCCCTGTAAGTGACTTTTCCCCCG < 41bp 0.749599509028647 0.351154948726217 0.1365346 0.029541701 prediction 0.499199018057293 Functional Loss - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40940179 chr17:40940182 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_65408 0 0 1 0 2 WNK4 chr17:40940206 5'GT 40940206 Upstream 25bp
chr22 25023827 25023827 1 + C T SKCM 25023825 + 25023805 25023845 41 TGGCTGGGCGGTAGCTTTGGCTCCAAGGTCCGCTCCCCGGT TGGCTGGGCGGTAGCTTTGGCTTCAAGGTCCGCTCCCCGGT < 41bp 0.824342923222209 0.574744765127809 0.9188498 0.09462649 prediction 0.499196316188799 Functional Loss - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25023825 chr22:25023827 nonsynonymous SNV 0.984 4 23 hm5C_associated_SNPs_65409 0 0 0 0 1 GGT1 chr22:25023819 3'AG 25023819 Downstream 9bp
chr16 57147250 57147250 1 + G T UCEC 57147247 + 57147227 57147267 41 AACCTCAACCCCGCCTTCTCCAAGAAGTTCGTGCTTGACTA AACCTCAACCCCGCCTTCTCCAATAAGTTCGTGCTTGACTA < 41bp 0.749594574413124 0.369890879798974 0.27409294 0.0068140924 prediction 0.499189148826249 Functional Loss - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57147247 chr16:57147250 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_65412 0 0 0 0 1 CPNE2 chr16:57147200 3'AG 57147200 Downstream 51bp
chr2 3425708 3425708 1 + C T UCEC 3425706 + 3425686 3425726 41 GCGGACGTCTCCTCACAGCCCACGGCCAGGGCTACGGCAAG GCGGACGTCTCCTCACAGCCCATGGCCAGGGCTACGGCAAG < 41bp 0.749571290439924 0.4850258469426 0.19158322 0.14563528 prediction 0.499142580879848 Functional Loss - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3425706 chr2:3425708 synonymous SNV . 0 23 hm5C_associated_SNPs_65419 0 0 1 0 2 TRAPPC12 chr2:3425652 3'AG 3425652 Downstream 57bp
chr2 3425708 3425708 1 + C T UCEC 3425706 + 3425686 3425726 41 GCGGACGTCTCCTCACAGCCCACGGCCAGGGCTACGGCAAG GCGGACGTCTCCTCACAGCCCATGGCCAGGGCTACGGCAAG < 41bp 0.749571290439924 0.4850258469426 0.19158322 0.14563528 prediction 0.499142580879848 Functional Loss - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3425706 chr2:3425708 synonymous SNV . 0 23 hm5C_associated_SNPs_65419 0 0 1 0 2 TRAPPC12 chr2:3425765 5'GT 3425765 Upstream 58bp
chr3 38411552 38411552 1 + G T UCEC 38411550 + 38411530 38411570 41 TTTCCTTCCTTCCTCAGGTTCTGGAATGAATTTGTTGCAGA TTTCCTTCCTTCCTCAGGTTCTTGAATGAATTTGTTGCAGA < 41bp 0.749571158547429 0.415286962019482 0.2605221 0.058292776 prediction 0.499142317094859 Functional Loss - XYLB ENSG00000093217 CDS Human protein_coding chr3:38411550 chr3:38411552 stopgain 0.996 1 23 hm5C_associated_SNPs_65420 0 0 1 0 1 XYLB chr3:38411547 3'AG 38411547 Downstream 6bp
chr12 27832973 27832973 1 + G T SARC 27832970 + 27832950 27832990 41 GGGGCCCCGATTAGGTTGGTCTCGAGACTTGGGACAGTCTA GGGGCCCCGATTAGGTTGGTCTCTAGACTTGGGACAGTCTA < 41bp 0.749567334455994 0.382491864187489 0.9238676 0.90056384 prediction 0.499134668911988 Functional Loss - PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27832970 chr12:27832973 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_65421 0 0 0 0 1 PPFIBP1 chr12:27832994 5'GT 27832994 Upstream 22bp
chr22 41553249 41553249 1 + A T UCEC 41553245 + 41553225 41553265 41 AGTTAGACACTGGACAGTATCAGGAGCCCTGGCAGTATGTC AGTTAGACACTGGACAGTATCAGGTGCCCTGGCAGTATGTC < 41bp 0.749566541037408 0.429225712443643 0.9425107 0.9383099 prediction 0.499133082074816 Functional Loss - EP300 ENSG00000100393 CDS Human protein_coding chr22:41553245 chr22:41553249 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_65422 0 0 1 0 1 EP300 chr22:41553173 3'AG 41553173 Downstream 77bp
chr15 31619950 31619950 1 + G C BLCA 31619949 + 31619929 31619969 41 GCGGGCTGCGAGAAAGTTTACGGGAAATCTTCGCACCTCAA GCGGGCTGCGAGAAAGTTTACCGGAAATCTTCGCACCTCAA < 41bp 0.840063882649587 0.59050064020715 0.9139918 0.8606378 prediction 0.499126484884874 Functional Loss - KLF13 ENSG00000169926 CDS Human protein_coding chr15:31619949 chr15:31619950 nonsynonymous SNV 0.906 3 22 hm5C_associated_SNPs_65423 0 0 1 0 1 KLF13 chr15:31619992 5'GT 31619992 Upstream 43bp
chr2 79350070 79350070 1 + C T LUSC 79350068 + 79350048 79350088 41 GGCTACTGTGTGAGCCTGACCTCAAGCACAGGTGAGAGGCA GGCTACTGTGTGAGCCTGACCTTAAGCACAGGTGAGAGGCA < 41bp 0.749562736401578 0.479890506006854 0.20811236 0.15389311 prediction 0.499125472803155 Functional Loss - REG1A ENSG00000115386 CDS Human protein_coding chr2:79350068 chr2:79350070 nonsynonymous SNV 0.010 1 23 hm5C_associated_SNPs_65424 0 0 0 0 1 REG1A chr2:79350078 5'GT 79350078 Upstream 9bp
chr17 61615955 61615955 1 + C T SKCM 61615953 + 61615933 61615973 41 GTGCACCTCGGCGACGTGCTCTCCACCCTCTACTTCATCTC GTGCACCTCGGCGACGTGCTCTTCACCCTCTACTTCATCTC < 41bp 0.835986576066484 0.586435095816042 0.8607404 0.18882155 prediction 0.499102960500885 Functional Loss - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61615953 chr17:61615955 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_65426 0 0 0 0 1 KCNH6 chr17:61616023 5'GT 61616023 Upstream 69bp
chr2 190660536 190660536 1 + G T rs143323454 190660533 + 190660513 190660553 41 AAAATTGAGGTGCGAGATAACGGGGAGGGTATCAAGGCTGT AAAATTGAGGTGCGAGATAACGGTGAGGGTATCAAGGCTGT < 41bp 0.892683599559727 0.643132383985173 0.922631 0.7392849 prediction 0.499102431149108 Functional Loss - PMS1 ENSG00000064933 CDS Human protein_coding chr2:190660533 chr2:190660536 synonymous SNV . 0 24 hm5C_associated_SNPs_65427 1 0 1 1 1 PMS1 chr2:190660495 3'AG 190660495 Downstream 42bp
chr1 64117380 64117380 1 + A T UCEC 64117376 + 64117356 64117396 41 GTGGAAGCTGAGGGCGCAAACAAAATGATGAAGGACTTGGA GTGGAAGCTGAGGGCGCAAACAAATTGATGAAGGACTTGGA < 41bp 0.749549929842458 0.427370196806319 0.87331235 0.8166115 prediction 0.499099859684917 Functional Loss - PGM1 ENSG00000079739 CDS Human protein_coding chr1:64117376 chr1:64117380 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_65428 0 0 1 0 1 PGM1 chr1:64117340 3'AG 64117340 Downstream 41bp
chr9 133753871 133753871 1 + A C STAD 133753870 + 133753850 133753890 41 ACCCGGGAATTGACCTGTCCCAGGTGTATGAGCTGCTAGAG ACCCGGGAATTGACCTGTCCCCGGTGTATGAGCTGCTAGAG < 41bp 0.749541155300231 0.479574610241249 0.841738 0.23002419 prediction 0.499082310600462 Functional Loss - ABL1 ENSG00000097007 CDS Human protein_coding chr9:133753870 chr9:133753871 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_65430 0 0 1 0 2 ABL1 chr9:133753802 3'AG 133753802 Downstream 70bp
chr9 133753871 133753871 1 + A C STAD 133753870 + 133753850 133753890 41 ACCCGGGAATTGACCTGTCCCAGGTGTATGAGCTGCTAGAG ACCCGGGAATTGACCTGTCCCCGGTGTATGAGCTGCTAGAG < 41bp 0.749541155300231 0.479574610241249 0.841738 0.23002419 prediction 0.499082310600462 Functional Loss - ABL1 ENSG00000097007 CDS Human protein_coding chr9:133753870 chr9:133753871 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_65430 0 0 1 0 2 ABL1 chr9:133753954 5'GT 133753954 Upstream 84bp
chr7 66418350 66418350 1 + C T COAD 66418348 + 66418328 66418368 41 AGAGCAATCCTGAATTTTGTCCCGAGAAGGTGAGCGGTGGA AGAGCAATCCTGAATTTTGTCCTGAGAAGGTGAGCGGTGGA < 41bp 0.807606013809242 0.558065203164047 0.25824255 0.19343066 prediction 0.499081621290392 Functional Loss - TMEM248 ENSG00000106609 CDS Human protein_coding chr7:66418348 chr7:66418350 synonymous SNV . 0 23 hm5C_associated_SNPs_65431 0 0 1 0 1 TMEM248 chr7:66418356 5'GT 66418356 Upstream 7bp
chr1 16374904 16374904 1 + G C LIHC 16374903 + 16374883 16374923 41 CGTGTGCGCACCACGACCATCGGGGAGCCTGAGGTTAGGGA CGTGTGCGCACCACGACCATCCGGGAGCCTGAGGTTAGGGA < 41bp 0.749538530150988 0.432477531555802 0.92071223 0.8839532 prediction 0.499077060301977 Functional Loss - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16374903 chr1:16374904 nonsynonymous SNV 0.432 1 22 hm5C_associated_SNPs_65432 0 0 0 0 2 CLCNKB chr1:16374838 3'AG 16374838 Downstream 67bp
chr1 16374904 16374904 1 + G C LIHC 16374903 + 16374883 16374923 41 CGTGTGCGCACCACGACCATCGGGGAGCCTGAGGTTAGGGA CGTGTGCGCACCACGACCATCCGGGAGCCTGAGGTTAGGGA < 41bp 0.749538530150988 0.432477531555802 0.92071223 0.8839532 prediction 0.499077060301977 Functional Loss - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16374903 chr1:16374904 nonsynonymous SNV 0.432 1 22 hm5C_associated_SNPs_65432 0 0 0 0 2 CLCNKB chr1:16374915 5'GT 16374915 Upstream 12bp
chr20 36687860 36687860 1 + G C LIHC 36687859 + 36687839 36687879 41 CATCAGGGGATGCTACTGTCCGACAGAAAATTGCTTCTCTG CATCAGGGGATGCTACTGTCCCACAGAAAATTGCTTCTCTG < 41bp 0.851705437249839 0.602171236968189 0.17307138 0.041944772 prediction 0.4990684005633 Functional Loss - RPRD1B ENSG00000101413 CDS Human protein_coding chr20:36687859 chr20:36687860 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_65433 0 0 1 0 2 RPRD1B chr20:36687796 3'AG 36687796 Downstream 65bp
chr20 36687860 36687860 1 + G C LIHC 36687859 + 36687839 36687879 41 CATCAGGGGATGCTACTGTCCGACAGAAAATTGCTTCTCTG CATCAGGGGATGCTACTGTCCCACAGAAAATTGCTTCTCTG < 41bp 0.851705437249839 0.602171236968189 0.17307138 0.041944772 prediction 0.4990684005633 Functional Loss - RPRD1B ENSG00000101413 CDS Human protein_coding chr20:36687859 chr20:36687860 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_65433 0 0 1 0 2 RPRD1B chr20:36687922 5'GT 36687922 Upstream 63bp
chr12 9984949 9984949 1 + G T LUSC 9984947 + 9984927 9984967 41 TGCACTGGTATAAAATCTTACTGGGAATATCTGGAACCGTG TGCACTGGTATAAAATCTTACTTGGAATATCTGGAACCGTG < 41bp 0.749525603621025 0.420213272744035 0.6669571 0.3751735 prediction 0.499051207242049 Functional Loss - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9984947 chr12:9984949 synonymous SNV . 0 23 hm5C_associated_SNPs_65437 0 0 0 0 2 KLRF1 chr12:9984912 3'AG 9984912 Downstream 38bp
chr12 9984949 9984949 1 + G T LUSC 9984947 + 9984927 9984967 41 TGCACTGGTATAAAATCTTACTGGGAATATCTGGAACCGTG TGCACTGGTATAAAATCTTACTTGGAATATCTGGAACCGTG < 41bp 0.749525603621025 0.420213272744035 0.6669571 0.3751735 prediction 0.499051207242049 Functional Loss - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9984947 chr12:9984949 synonymous SNV . 0 23 hm5C_associated_SNPs_65437 0 0 0 0 2 KLRF1 chr12:9985010 5'GT 9985010 Upstream 62bp
chr4 78815401 78815401 1 + C T HNSC 78815399 + 78815379 78815419 41 TAAAAAATATCCAAAGCTTTCTCGAAGTAAGAGAATTCCTA TAAAAAATATCCAAAGCTTTCTTGAAGTAAGAGAATTCCTA < 41bp 0.801878488587689 0.552353410354904 0.21410093 0.06448287 prediction 0.49905015646557 Functional Loss - MRPL1 ENSG00000169288 CDS Human protein_coding chr4:78815399 chr4:78815401 stopgain 0.091 1 23 hm5C_associated_SNPs_65438 0 0 1 0 1 MRPL1 chr4:78815404 5'GT 78815404 Upstream 4bp
chr9 135906488 135906488 1 + G T CESC 135906486 + 135906466 135906506 41 GCATGGTGTGCGTGGAGTACCCGGGAGTGGTGCGTGATGTG GCATGGTGTGCGTGGAGTACCCTGGAGTGGTGCGTGATGTG < 41bp 0.749521027548367 0.40847987173089 0.87386096 0.2039991 prediction 0.499042055096734 Functional Loss - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135906486 chr9:135906488 synonymous SNV . 0 23 hm5C_associated_SNPs_65440 0 0 1 0 1 GTF3C5 chr9:135906551 5'GT 135906551 Upstream 64bp
chr16 81739151 81739151 1 + C T PAAD 81739149 + 81739129 81739169 41 TGTCGGAACACCTCACCATGCTCCAGGTGCTGAACCTGTGC TGTCGGAACACCTCACCATGCTTCAGGTGCTGAACCTGTGC < 41bp 0.749517209824718 0.452995343003067 0.9060935 0.3557822 prediction 0.499034419649435 Functional Loss - CMIP ENSG00000153815 CDS Human protein_coding chr16:81739149 chr16:81739151 synonymous SNV . 0 23 hm5C_associated_SNPs_65441 0 0 1 0 2 CMIP chr16:81739104 3'AG 81739104 Downstream 48bp
chr16 81739151 81739151 1 + C T PAAD 81739149 + 81739129 81739169 41 TGTCGGAACACCTCACCATGCTCCAGGTGCTGAACCTGTGC TGTCGGAACACCTCACCATGCTTCAGGTGCTGAACCTGTGC < 41bp 0.749517209824718 0.452995343003067 0.9060935 0.3557822 prediction 0.499034419649435 Functional Loss - CMIP ENSG00000153815 CDS Human protein_coding chr16:81739149 chr16:81739151 synonymous SNV . 0 23 hm5C_associated_SNPs_65441 0 0 1 0 2 CMIP chr16:81739209 5'GT 81739209 Upstream 59bp
chr19 1255036 1255036 1 + G T LUAD 1255034 + 1255014 1255054 41 GAGCTTTGTGAATCACGCCCCGGGGGTCTTCTCAGGGACCT GAGCTTTGTGAATCACGCCCCGTGGGTCTTCTCAGGGACCT < 41bp 0.749512465035759 0.396314101394765 0.85604167 0.06313124 prediction 0.499024930071517 Functional Loss - MIDN ENSG00000167470 CDS Human protein_coding chr19:1255034 chr19:1255036 nonsynonymous SNV 0.974 4 23 hm5C_associated_SNPs_65443 0 0 1 0 1 MIDN chr19:1255060 5'GT 1255060 Upstream 25bp
chr1 36039537 36039537 1 + G C PAAD 36039536 + 36039516 36039556 41 CTCCTTCCCCAGGAGCGCCCCGACGGGCTGGGAGCAGCTGC CTCCTTCCCCAGGAGCGCCCCCACGGGCTGGGAGCAGCTGC < 41bp 0.749508364850646 0.432183010676912 0.39884555 0.3249129 prediction 0.499016729701293 Functional Loss - TFAP2E ENSG00000116819 CDS Human protein_coding chr1:36039536 chr1:36039537 nonsynonymous SNV 0.988 2 22 hm5C_associated_SNPs_65447 0 0 0 0 1 TFAP2E chr1:36039528 3'AG 36039528 Downstream 10bp
chr19 41727921 41727921 1 + G A COAD 41727918 + 41727898 41727938 41 CAGGATGCTGTCCCCCTGGCCACGGCTCCAGGTCACGGCCC CAGGATGCTGTCCCCCTGGCCACAGCTCCAGGTCACGGCCC < 41bp 0.749504345925404 0.495625632251526 0.20144394 0.19431725 prediction 0.499008691850807 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41727918 chr19:41727921 synonymous SNV . 0 24 hm5C_associated_SNPs_65448 0 0 0 0 1 AXL chr19:41727961 5'GT 41727961 Upstream 41bp
chr2 118579520 118579520 1 + C T COAD 118579518 + 118579498 118579538 41 TTAAGGAGCTGATGACTCACCACGTGCATACCTATGGCTTG TTAAGGAGCTGATGACTCACCATGTGCATACCTATGGCTTG < 41bp 0.778734286093313 0.529232326891909 0.67255056 0.47536117 prediction 0.499003918402808 Functional Loss - DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579518 chr2:118579520 synonymous SNV . 0 23 hm5C_associated_SNPs_65449 0 0 1 0 1 DDX18 chr2:118579438 3'AG 118579438 Downstream 83bp
chr6 83845374 83845374 1 + C T UCEC 83845372 + 83845352 83845392 41 TGTTAGATAGCCTTAACAGTCTCGATGGTTCTACTAGCTCT TGTTAGATAGCCTTAACAGTCTTGATGGTTCTACTAGCTCT < 41bp 0.749496907715705 0.459832281321223 0.8391582 0.33694577 prediction 0.498993815431411 Functional Loss - DOPEY1 ENSG00000083097 CDS Human protein_coding chr6:83845372 chr6:83845374 synonymous SNV . 0 23 hm5C_associated_SNPs_65450 0 0 0 0 1 DOPEY1 chr6:83845338 3'AG 83845338 Downstream 37bp
chr3 179336216 179336216 1 + G T UCEC 179336213 + 179336193 179336233 41 TCTCTTGTAGCATCCCATATCAAGATGGATTGCCCGTAATT TCTCTTGTAGCATCCCATATCAATATGGATTGCCCGTAATT < 41bp 0.749474018070338 0.396093590602254 0.9270033 0.084560275 prediction 0.498948036140675 Functional Loss - NDUFB5 ENSG00000136521 CDS Human protein_coding chr3:179336213 chr3:179336216 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_65456 0 0 1 2 2 NDUFB5 chr3:179336203 3'AG 179336203 Downstream 14bp
chr3 179336216 179336216 1 + G T UCEC 179336213 + 179336193 179336233 41 TCTCTTGTAGCATCCCATATCAAGATGGATTGCCCGTAATT TCTCTTGTAGCATCCCATATCAATATGGATTGCCCGTAATT < 41bp 0.749474018070338 0.396093590602254 0.9270033 0.084560275 prediction 0.498948036140675 Functional Loss - NDUFB5 ENSG00000136521 CDS Human protein_coding chr3:179336213 chr3:179336216 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_65456 0 0 1 2 2 NDUFB5 chr3:179336309 5'GT 179336309 Upstream 94bp
chr21 47422160 47422160 1 + G T LGG 47422158 + 47422138 47422178 41 CAAGAGCCTGCAGTGGATGGCGGGCGGCACCTTCACGGGGG CAAGAGCCTGCAGTGGATGGCGTGCGGCACCTTCACGGGGG < 41bp 0.749472837735136 0.394485296426455 0.9286889 0.5878234 prediction 0.498945675470271 Functional Loss - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47422158 chr21:47422160 nonsynonymous SNV 0.088 5 23 hm5C_associated_SNPs_65457 0 0 0 0 1 COL6A1 chr21:47422132 3'AG 47422132 Downstream 29bp
chr21 47422159 47422159 1 + G C LUSC 47422158 + 47422138 47422178 41 CAAGAGCCTGCAGTGGATGGCGGGCGGCACCTTCACGGGGG CAAGAGCCTGCAGTGGATGGCCGGCGGCACCTTCACGGGGG < 41bp 0.749472837735136 0.425910615198672 0.9286889 0.88488925 prediction 0.498945675470271 Functional Loss - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47422158 chr21:47422159 synonymous SNV . 0 22 hm5C_associated_SNPs_65458 0 0 0 0 1 COL6A1 chr21:47422132 3'AG 47422132 Downstream 28bp
chr11 93528151 93528151 1 + C T SKCM 93528149 + 93528129 93528169 41 AGAAATTTTTGCACAGCTCTCTCGGGAAGCTGTTCAAATTA AGAAATTTTTGCACAGCTCTCTTGGGAAGCTGTTCAAATTA < 41bp 0.749472315156098 0.467882310810223 0.064608365 0.066551834 prediction 0.498944630312196 Functional Loss - MED17 ENSG00000042429 CDS Human protein_coding chr11:93528149 chr11:93528151 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_65459 0 0 1 0 2 MED17 chr11:93528074 3'AG 93528074 Downstream 78bp
chr11 93528151 93528151 1 + C T SKCM 93528149 + 93528129 93528169 41 AGAAATTTTTGCACAGCTCTCTCGGGAAGCTGTTCAAATTA AGAAATTTTTGCACAGCTCTCTTGGGAAGCTGTTCAAATTA < 41bp 0.749472315156098 0.467882310810223 0.064608365 0.066551834 prediction 0.498944630312196 Functional Loss - MED17 ENSG00000042429 CDS Human protein_coding chr11:93528149 chr11:93528151 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_65459 0 0 1 0 2 MED17 chr11:93528226 5'GT 93528226 Upstream 76bp
chr19 1207118 1207118 1 + C T CESC 1207116 + 1207096 1207136 41 AAGGTGAAGGAGGTGCTGGACTCGGAGACGCTGTGCAGGAG AAGGTGAAGGAGGTGCTGGACTTGGAGACGCTGTGCAGGAG < 41bp 0.756125732227074 0.506663544655468 0.13789704 0.13495532 prediction 0.49892437514321 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1207116 chr19:1207118 nonsynonymous SNV 0.916 3 23 hm5C_associated_SNPs_65460 0 0 1 0 1 STK11 chr19:1207202 5'GT 1207202 Upstream 85bp
chr12 9089850 9089850 1 + C T STAD 9089848 + 9089828 9089868 41 TTCAAGAAGCCAACTATGCTCGCGTTCGCAGGCGTGGACCC TTCAAGAAGCCAACTATGCTCGTGTTCGCAGGCGTGGACCC < 41bp 0.808215971688034 0.558754943702071 0.09520206 0.109995484 prediction 0.498922055971925 Functional Loss - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9089848 chr12:9089850 synonymous SNV . 0 23 hm5C_associated_SNPs_65461 0 0 0 0 2 PHC1 chr12:9089772 3'AG 9089772 Downstream 79bp
chr12 9089850 9089850 1 + C T STAD 9089848 + 9089828 9089868 41 TTCAAGAAGCCAACTATGCTCGCGTTCGCAGGCGTGGACCC TTCAAGAAGCCAACTATGCTCGTGTTCGCAGGCGTGGACCC < 41bp 0.808215971688034 0.558754943702071 0.09520206 0.109995484 prediction 0.498922055971925 Functional Loss - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9089848 chr12:9089850 synonymous SNV . 0 23 hm5C_associated_SNPs_65461 0 0 0 0 2 PHC1 chr12:9089922 5'GT 9089922 Upstream 73bp
chr19 3281228 3281228 1 + C T STAD 3281226 + 3281206 3281246 41 TCCAGCCTGGTGGTCAAGTTCGCCGACACGGACAAGGAGCG TCCAGCCTGGTGGTCAAGTTCGTCGACACGGACAAGGAGCG < 41bp 0.798185744284017 0.548739499716025 0.36596498 0.44068956 prediction 0.498892489135986 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3281226 chr19:3281228 nonsynonymous SNV 0.960 4 23 hm5C_associated_SNPs_65465 0 0 0 0 1 CELF5 chr19:3281197 3'AG 3281197 Downstream 32bp
chrX 130217929 130217929 1 + C T UCEC 130217927 + 130217907 130217947 41 CACCTTGCCCCGGGAGTTCACTCGCCGTGGGCGTCGAGTGA CACCTTGCCCCGGGAGTTCACTTGCCGTGGGCGTCGAGTGA < 41bp 0.749444846838735 0.482311511228301 0.37786022 0.33240625 prediction 0.49888969367747 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130217927 chrX:130217929 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_65466 0 0 0 0 1 ARHGAP36 chrX:130217943 5'GT 130217943 Upstream 15bp
chr5 153792490 153792490 1 + C T rs35448914 153792488 + 153792468 153792508 41 GGCTGTGTGCAGACACAAAGCACGGGGCCTTGGGCTCCCCA GGCTGTGTGCAGACACAAAGCATGGGGCCTTGGGCTCCCCA < 41bp 0.749443963465809 0.489837860535212 0.8825953 0.739628 prediction 0.498887926931619 Functional Loss - GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153792488 chr5:153792490 synonymous SNV . 0 23 hm5C_associated_SNPs_65467 0 0 1 0 2 GALNT10 chr5:153792449 3'AG 153792449 Downstream 42bp
chr5 153792490 153792490 1 + C T rs35448914 153792488 + 153792468 153792508 41 GGCTGTGTGCAGACACAAAGCACGGGGCCTTGGGCTCCCCA GGCTGTGTGCAGACACAAAGCATGGGGCCTTGGGCTCCCCA < 41bp 0.749443963465809 0.489837860535212 0.8825953 0.739628 prediction 0.498887926931619 Functional Loss - GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153792488 chr5:153792490 synonymous SNV . 0 23 hm5C_associated_SNPs_65467 0 0 1 0 2 GALNT10 chr5:153792565 5'GT 153792565 Upstream 76bp
chr2 29386784 29386784 1 + G T UCEC 29386781 + 29386761 29386801 41 GCAGTATTTTAGCTGTTCTCCAAGATATGGAATATTTGCTC GCAGTATTTTAGCTGTTCTCCAATATATGGAATATTTGCTC < 41bp 0.749440373220673 0.372566537026982 0.19355857 0.03409165 prediction 0.498880746441347 Functional Loss - CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29386781 chr2:29386784 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_65468 0 0 0 0 2 CLIP4 chr2:29386697 3'AG 29386697 Downstream 88bp
chr2 29386784 29386784 1 + G T UCEC 29386781 + 29386761 29386801 41 GCAGTATTTTAGCTGTTCTCCAAGATATGGAATATTTGCTC GCAGTATTTTAGCTGTTCTCCAATATATGGAATATTTGCTC < 41bp 0.749440373220673 0.372566537026982 0.19355857 0.03409165 prediction 0.498880746441347 Functional Loss - CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29386781 chr2:29386784 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_65468 0 0 0 0 2 CLIP4 chr2:29386820 5'GT 29386820 Upstream 37bp
chr6 34803959 34803959 1 + G T UCEC 34803957 + 34803937 34803977 41 CTCCACCAGCCCCCAGTGCCCAGCAGTCCTGGGCCCAGGCA CTCCACCAGCCCCCAGTGCCCATCAGTCCTGGGCCCAGGCA < 41bp 0.749433312774582 0.392946196339921 0.26452988 0.049824953 prediction 0.498866625549164 Functional Loss - UHRF1BP1 ENSG00000065060 CDS Human protein_coding chr6:34803957 chr6:34803959 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_65469 0 0 1 0 1 UHRF1BP1 chr6:34803933 3'AG 34803933 Downstream 27bp
chr1 206623757 206623757 1 + C T SKCM 206623755 + 206623735 206623775 41 AGCCCTCATGGAGAGACTACCTCGGTTGAAGACTCAACCCA AGCCCTCATGGAGAGACTACCTTGGTTGAAGACTCAACCCA < 41bp 0.749426140719807 0.467705854188591 0.26496062 0.0810177 prediction 0.498852281439614 Functional Loss - SRGAP2 ENSG00000163486 CDS Human other chr1:206623755 chr1:206623757 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_65471 0 0 1 0 2 SRGAP2 chr1:206623731 3'AG 206623731 Downstream 27bp
chr1 206623757 206623757 1 + C T SKCM 206623755 + 206623735 206623775 41 AGCCCTCATGGAGAGACTACCTCGGTTGAAGACTCAACCCA AGCCCTCATGGAGAGACTACCTTGGTTGAAGACTCAACCCA < 41bp 0.749426140719807 0.467705854188591 0.26496062 0.0810177 prediction 0.498852281439614 Functional Loss - SRGAP2 ENSG00000163486 CDS Human other chr1:206623755 chr1:206623757 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_65471 0 0 1 0 2 SRGAP2 chr1:206623810 5'GT 206623810 Upstream 54bp
chr2 73478511 73478511 1 + G T LUSC 73478508 + 73478488 73478528 41 ACGCCAGCTGTGTGACAATGCTGGCTTTGATGCCACAAACA ACGCCAGCTGTGTGACAATGCTGTCTTTGATGCCACAAACA < 41bp 0.749424274935382 0.354236240790646 0.22617912 0.08944696 prediction 0.498848549870764 Functional Loss - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73478508 chr2:73478511 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_65472 0 0 1 0 1 CCT7 chr2:73478560 5'GT 73478560 Upstream 50bp
chr11 55036792 55036792 1 + G C STAD 55036788 + 55036768 55036808 41 GGGCAGGGCCCATCACTGGACTGAGGGACAGGCTCAACCAA GGGCAGGGCCCATCACTGGACTGACGGACAGGCTCAACCAA < 41bp 0.82679393690635 0.577370420086691 0.45906973 0.24155435 prediction 0.498847033639317 Functional Loss - TRIM48 ENSG00000150244 CDS Human protein_coding chr11:55036788 chr11:55036792 nonsynonymous SNV 0.288 0 25 hm5C_associated_SNPs_65473 0 0 0 0 2 TRIM48 chr11:55036718 3'AG 55036718 Downstream 75bp
chr11 55036792 55036792 1 + G C STAD 55036788 + 55036768 55036808 41 GGGCAGGGCCCATCACTGGACTGAGGGACAGGCTCAACCAA GGGCAGGGCCCATCACTGGACTGACGGACAGGCTCAACCAA < 41bp 0.82679393690635 0.577370420086691 0.45906973 0.24155435 prediction 0.498847033639317 Functional Loss - TRIM48 ENSG00000150244 CDS Human protein_coding chr11:55036788 chr11:55036792 nonsynonymous SNV 0.288 0 25 hm5C_associated_SNPs_65473 0 0 0 0 2 TRIM48 chr11:55036815 5'GT 55036815 Upstream 24bp
chr20 25261605 25261605 1 + C T rs2228978 25261603 + 25261583 25261623 41 AGCACGTGGCCGCGCTGTTTCCCGGCGATGTGGACCGCCTG AGCACGTGGCCGCGCTGTTTCCTGGCGATGTGGACCGCCTG < 41bp 0.7754387155398 0.526015627019425 0.91436386 0.64287466 prediction 0.498846177040749 Functional Loss - PYGB ENSG00000100994 CDS Human protein_coding chr20:25261603 chr20:25261605 synonymous SNV . 0 23 hm5C_associated_SNPs_65474 0 0 1 0 1 PYGB chr20:25261585 3'AG 25261585 Downstream 21bp
chr12 124103227 124103227 1 + G T UCEC 124103225 + 124103205 124103245 41 TGTGTGTGTAGTGCCCCCTGCAGGAGATGAAGCCCCAGAGA TGTGTGTGTAGTGCCCCCTGCATGAGATGAAGCCCCAGAGA < 41bp 0.891031344395471 0.64163486919857 0.90422624 0.36588538 prediction 0.498792950393801 Functional Loss - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124103225 chr12:124103227 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_65481 0 0 1 0 1 DDX55 chr12:124103216 3'AG 124103216 Downstream 12bp
chr2 233322733 233322733 1 + A C UCEC 233322729 + 233322709 233322749 41 CCTCTTTGAGCCCGGAGACACGAAATATGAGATCCACCGAG CCTCTTTGAGCCCGGAGACACGAACTATGAGATCCACCGAG < 41bp 0.749396318463727 0.345218065382149 0.3127637 0.11631137 prediction 0.498792636927454 Functional Loss - ALPI ENSG00000163295 CDS Human protein_coding chr2:233322729 chr2:233322733 nonsynonymous SNV 0.810 1 25 hm5C_associated_SNPs_65482 0 0 0 0 1 ALPI chr2:233322708 3'AG 233322708 Downstream 26bp
chr1 47581263 47581263 1 + C T BRCA 47581261 + 47581241 47581281 41 CCCCTATTTCTGGGAAGACCCTCAGGTATGATTGTCCCAAC CCCCTATTTCTGGGAAGACCCTTAGGTATGATTGTCCCAAC < 41bp 0.787456607324576 0.538067136344926 0.114581674 0.088790506 prediction 0.4987789419593 Functional Loss - CYP4Z1 ENSG00000186160 CDS Human protein_coding chr1:47581261 chr1:47581263 stopgain 0.013 0 23 hm5C_associated_SNPs_65485 0 0 0 0 2 CYP4Z1 chr1:47581201 3'AG 47581201 Downstream 63bp
chr1 47581263 47581263 1 + C T BRCA 47581261 + 47581241 47581281 41 CCCCTATTTCTGGGAAGACCCTCAGGTATGATTGTCCCAAC CCCCTATTTCTGGGAAGACCCTTAGGTATGATTGTCCCAAC < 41bp 0.787456607324576 0.538067136344926 0.114581674 0.088790506 prediction 0.4987789419593 Functional Loss - CYP4Z1 ENSG00000186160 CDS Human protein_coding chr1:47581261 chr1:47581263 stopgain 0.013 0 23 hm5C_associated_SNPs_65485 0 0 0 0 2 CYP4Z1 chr1:47581265 5'GT 47581265 Upstream 3bp
chr14 77685249 77685249 1 + G T LUSC 77685247 + 77685227 77685267 41 AGTCTCGGAACACCGTCCTCCAGGGGCAGCCCTTTGGGGGT AGTCTCGGAACACCGTCCTCCATGGGCAGCCCTTTGGGGGT < 41bp 0.749387803963158 0.382443348456807 0.95025134 0.4670173 prediction 0.498775607926316 Functional Loss - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77685247 chr14:77685249 nonsynonymous SNV 0.993 1 23 hm5C_associated_SNPs_65487 0 0 0 0 1 TMEM63C chr14:77685306 5'GT 77685306 Upstream 58bp
chr9 131233674 131233674 1 + G T SARC 131233671 + 131233651 131233691 41 TGGAGGAGGTGGCCCACGAACTGGCTGAGACTGAGCACGAG TGGAGGAGGTGGCCCACGAACTGTCTGAGACTGAGCACGAG < 41bp 0.749373958519965 0.383650249216113 0.24249545 0.053919464 prediction 0.498747917039931 Functional Loss - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131233671 chr9:131233674 nonsynonymous SNV 0.023 1 24 hm5C_associated_SNPs_65490 0 0 1 0 2 ODF2 chr9:131233587 3'AG 131233587 Downstream 88bp
chr9 131233674 131233674 1 + G T SARC 131233671 + 131233651 131233691 41 TGGAGGAGGTGGCCCACGAACTGGCTGAGACTGAGCACGAG TGGAGGAGGTGGCCCACGAACTGTCTGAGACTGAGCACGAG < 41bp 0.749373958519965 0.383650249216113 0.24249545 0.053919464 prediction 0.498747917039931 Functional Loss - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131233671 chr9:131233674 nonsynonymous SNV 0.023 1 24 hm5C_associated_SNPs_65490 0 0 1 0 2 ODF2 chr9:131233747 5'GT 131233747 Upstream 74bp
chr22 45221432 45221432 1 + G C STAD 45221428 + 45221408 45221448 41 TCCCACCAAGACACCACCGCCGCGGCCCCCGCTGCCCACAC TCCCACCAAGACACCACCGCCGCGCCCCCCGCTGCCCACAC < 41bp 0.821603476210892 0.57224153545725 0.5838713 0.11475259 prediction 0.498723881507283 Functional Loss - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45221428 chr22:45221432 synonymous SNV . 0 25 hm5C_associated_SNPs_65492 0 0 0 0 2 ARHGAP8;PRR5-ARHGAP8 chr22:45221363 3'AG 45221363 Downstream 70bp
chr22 45221432 45221432 1 + G C STAD 45221428 + 45221408 45221448 41 TCCCACCAAGACACCACCGCCGCGGCCCCCGCTGCCCACAC TCCCACCAAGACACCACCGCCGCGCCCCCCGCTGCCCACAC < 41bp 0.821603476210892 0.57224153545725 0.5838713 0.11475259 prediction 0.498723881507283 Functional Loss - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45221428 chr22:45221432 synonymous SNV . 0 25 hm5C_associated_SNPs_65492 0 0 0 0 2 ARHGAP8;PRR5-ARHGAP8 chr22:45221473 5'GT 45221473 Upstream 42bp
chr5 96314940 96314940 1 + G T OV 96314937 + 96314917 96314957 41 AAGAGCCTTGTTTACATCCTCTAGAGCCTGATGAGGTGGAA AAGAGCCTTGTTTACATCCTCTATAGCCTGATGAGGTGGAA < 41bp 0.749360525544123 0.372683132868244 0.1795415 0.123437315 prediction 0.498721051088247 Functional Loss - LNPEP ENSG00000113441 CDS Human protein_coding chr5:96314937 chr5:96314940 stopgain 0.996 1 24 hm5C_associated_SNPs_65493 0 0 1 0 1 LNPEP chr5:96314842 3'AG 96314842 Downstream 99bp
chr10 81901861 81901861 1 + C T STAD 81901859 + 81901839 81901879 41 TGCCGAACCCTTCAGCCCTCCGCGAGGAGACTCAGCTCAGA TGCCGAACCCTTCAGCCCTCCGTGAGGAGACTCAGCTCAGA < 41bp 0.778065841025778 0.528715848734718 0.27940303 0.31706536 prediction 0.49869998458212 Functional Loss - PLAC9 ENSG00000189129 CDS Human protein_coding chr10:81901859 chr10:81901861 stopgain 0.000 0 23 hm5C_associated_SNPs_65496 0 0 0 0 2 PLAC9 chr10:81901838 3'AG 81901838 Downstream 24bp
chr10 81901861 81901861 1 + C T STAD 81901859 + 81901839 81901879 41 TGCCGAACCCTTCAGCCCTCCGCGAGGAGACTCAGCTCAGA TGCCGAACCCTTCAGCCCTCCGTGAGGAGACTCAGCTCAGA < 41bp 0.778065841025778 0.528715848734718 0.27940303 0.31706536 prediction 0.49869998458212 Functional Loss - PLAC9 ENSG00000189129 CDS Human protein_coding chr10:81901859 chr10:81901861 stopgain 0.000 0 23 hm5C_associated_SNPs_65496 0 0 0 0 2 PLAC9 chr10:81901935 5'GT 81901935 Upstream 75bp
chr13 108922722 108922722 1 + C T LIHC 108922720 + 108922700 108922740 41 CCAGCTCCAGGAGAAGGCAACTCCAGTCAGAACAGCAGAAA CCAGCTCCAGGAGAAGGCAACTTCAGTCAGAACAGCAGAAA < 41bp 0.823525145990858 0.574177497369776 0.74036384 0.24060231 prediction 0.498695297242165 Functional Loss - TNFSF13B ENSG00000102524 CDS Human protein_coding chr13:108922720 chr13:108922722 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_65497 0 0 0 0 2 TNFSF13B chr13:108922688 3'AG 108922688 Downstream 35bp
chr13 108922722 108922722 1 + C T LIHC 108922720 + 108922700 108922740 41 CCAGCTCCAGGAGAAGGCAACTCCAGTCAGAACAGCAGAAA CCAGCTCCAGGAGAAGGCAACTTCAGTCAGAACAGCAGAAA < 41bp 0.823525145990858 0.574177497369776 0.74036384 0.24060231 prediction 0.498695297242165 Functional Loss - TNFSF13B ENSG00000102524 CDS Human protein_coding chr13:108922720 chr13:108922722 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_65497 0 0 0 0 2 TNFSF13B chr13:108922772 5'GT 108922772 Upstream 51bp
chr14 24109060 24109060 1 + C T rs146755306 24109058 + 24109038 24109078 41 GTGCAGCGCAGGGGTCAACCCTCTGGTAGGGAGCACTCTGG GTGCAGCGCAGGGGTCAACCCTTTGGTAGGGAGCACTCTGG < 41bp 0.800257065550545 0.550913540867185 0.25523877 0.10285166 prediction 0.49868704936672 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24109058 chr14:24109060 synonymous SNV . 0 23 hm5C_associated_SNPs_65499 0 0 1 0 2 DHRS2 chr14:24109003 3'AG 24109003 Downstream 58bp
chr14 24109060 24109060 1 + C T rs146755306 24109058 + 24109038 24109078 41 GTGCAGCGCAGGGGTCAACCCTCTGGTAGGGAGCACTCTGG GTGCAGCGCAGGGGTCAACCCTTTGGTAGGGAGCACTCTGG < 41bp 0.800257065550545 0.550913540867185 0.25523877 0.10285166 prediction 0.49868704936672 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24109058 chr14:24109060 synonymous SNV . 0 23 hm5C_associated_SNPs_65499 0 0 1 0 2 DHRS2 chr14:24109104 5'GT 24109104 Upstream 45bp
chr12 104458418 104458418 1 + G C LUAD 104458414 + 104458394 104458434 41 TCCCCCGCGCCCGGCACGGACACCGAGCGGTGGCCATCCGG TCCCCCGCGCCCGGCACGGACACCCAGCGGTGGCCATCCGG < 41bp 0.811888940609578 0.562545997960217 0.532802 0.20735046 prediction 0.498685885298721 Functional Loss - HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104458414 chr12:104458418 nonsynonymous SNV 0.994 2 25 hm5C_associated_SNPs_65500 0 0 1 0 1 HCFC2 chr12:104458501 5'GT 104458501 Upstream 84bp
chr12 6947196 6947196 1 + C T rs78623250 6947194 + 6947174 6947214 41 GAGCCCAACGCCCTCACTGTCACGGTGCGTGGAGTGGGGGG GAGCCCAACGCCCTCACTGTCATGGTGCGTGGAGTGGGGGG < 41bp 0.768859858643517 0.519517298352855 0.5328565 0.8953928 prediction 0.498685120581323 Functional Loss - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6947194 chr12:6947196 nonsynonymous SNV 0.943 3 23 hm5C_associated_SNPs_65501 0 0 1 0 2 P3H3 chr12:6947122 3'AG 6947122 Downstream 75bp
chr12 6947196 6947196 1 + C T rs78623250 6947194 + 6947174 6947214 41 GAGCCCAACGCCCTCACTGTCACGGTGCGTGGAGTGGGGGG GAGCCCAACGCCCTCACTGTCATGGTGCGTGGAGTGGGGGG < 41bp 0.768859858643517 0.519517298352855 0.5328565 0.8953928 prediction 0.498685120581323 Functional Loss - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6947194 chr12:6947196 nonsynonymous SNV 0.943 3 23 hm5C_associated_SNPs_65501 0 0 1 0 2 P3H3 chr12:6947197 5'GT 6947197 Upstream 2bp
chr11 70028779 70028779 1 + G C LUAD 70028775 + 70028755 70028795 41 GACCCCCTGGACCTGGGCTACGAGGTGCAGATCTGCAGGTA GACCCCCTGGACCTGGGCTACGAGCTGCAGATCTGCAGGTA < 41bp 0.749325154374982 0.456806396475723 0.9251466 0.32962823 prediction 0.498650308749964 Functional Loss - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70028775 chr11:70028779 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_65505 0 0 0 1 1 ANO1 chr11:70028792 5'GT 70028792 Upstream 14bp
chr2 75113620 75113620 1 + C T LGG 75113618 + 75113598 75113638 41 GGTATCCTGTGATTGGCAGGCACGGGCAGCAATGCCTGCTA GGTATCCTGTGATTGGCAGGCATGGGCAGCAATGCCTGCTA < 41bp 0.792194371650817 0.542881859185472 0.63681424 0.83411705 prediction 0.49862502493069 Functional Loss - HK2 ENSG00000159399 CDS Human protein_coding chr2:75113618 chr2:75113620 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_65507 0 0 1 0 1 HK2 chr2:75113617 3'AG 75113617 Downstream 4bp
chrX 46322677 46322677 1 + G T UCEC 46322675 + 46322655 46322695 41 TGTGATCTTCAGGTTGGGACCAGGTGAAGAGTCCTGGATGG TGTGATCTTCAGGTTGGGACCATGTGAAGAGTCCTGGATGG < 41bp 0.890043586404681 0.640731733008521 0.9259654 0.56653655 prediction 0.49862370679232 Functional Loss - KRBOX4 ENSG00000147121 CDS Human protein_coding chrX:46322675 chrX:46322677 nonsynonymous SNV 0.976 3 23 hm5C_associated_SNPs_65508 0 0 1 0 2 KRBOX4 chrX:46322728 5'GT 46322728 Upstream 52bp
chrX 46322677 46322677 1 + G T UCEC 46322675 + 46322655 46322695 41 TGTGATCTTCAGGTTGGGACCAGGTGAAGAGTCCTGGATGG TGTGATCTTCAGGTTGGGACCATGTGAAGAGTCCTGGATGG < 41bp 0.890043586404681 0.640731733008521 0.9259654 0.56653655 prediction 0.49862370679232 Functional Loss - KRBOX4 ENSG00000147121 CDS Human protein_coding chrX:46322675 chrX:46322677 nonsynonymous SNV 0.976 3 23 hm5C_associated_SNPs_65508 0 0 1 0 2 KRBOX4 chrX:46322743 5'GT 46322743 Upstream 67bp
chr21 35446045 35446045 1 + G T rs571440239 35446043 + 35446023 35446063 41 TAATCCTGAAAGCCATGCAGCGGGTAAGTGACCTTCCCTCA TAATCCTGAAAGCCATGCAGCGTGTAAGTGACCTTCCCTCA < 41bp 0.749300535863613 0.416652432342636 0.85972524 0.36052445 prediction 0.498601071727226 Functional Loss - MRPS6 ENSG00000243927 CDS Human protein_coding chr21:35446043 chr21:35446045 synonymous SNV . 0 23 hm5C_associated_SNPs_65512 0 0 1 0 1 MRPS6 chr21:35446045 5'GT 35446045 Upstream 1bp
chr19 47634280 47634280 1 + G T UCEC 47634278 + 47634258 47634298 41 GCCTGTGGGGACTGGAGGCCCAGAAACGGTCAGGGCCGGCG GCCTGTGGGGACTGGAGGCCCATAAACGGTCAGGGCCGGCG < 41bp 0.879226794799689 0.62992731992798 0.43455595 0.3034113 prediction 0.498598949743418 Functional Loss - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47634278 chr19:47634280 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_65513 0 0 1 0 2 SAE1 chr19:47634285 5'GT 47634285 Upstream 6bp
chr19 47634280 47634280 1 + G T UCEC 47634278 + 47634258 47634298 41 GCCTGTGGGGACTGGAGGCCCAGAAACGGTCAGGGCCGGCG GCCTGTGGGGACTGGAGGCCCATAAACGGTCAGGGCCGGCG < 41bp 0.879226794799689 0.62992731992798 0.43455595 0.3034113 prediction 0.498598949743418 Functional Loss - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47634278 chr19:47634280 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_65513 0 0 1 0 2 SAE1 chr19:47634369 5'GT 47634369 Upstream 90bp
chr7 107334909 107334909 1 + T C STAD 107334908 + 107334888 107334928 41 TTCTTGCCCTGGGGAAGCTTCTGGAACCCTTGCAGAAGGTA TTCTTGCCCTGGGGAAGCTTCCGGAACCCTTGCAGAAGGTA < 41bp 0.751801406852008 0.502508003415224 0.3245037 0.57260627 prediction 0.498586806873569 Functional Loss - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107334908 chr7:107334909 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_65514 0 0 0 0 2 SLC26A4 chr7:107334848 3'AG 107334848 Downstream 62bp
chr7 107334909 107334909 1 + T C STAD 107334908 + 107334888 107334928 41 TTCTTGCCCTGGGGAAGCTTCTGGAACCCTTGCAGAAGGTA TTCTTGCCCTGGGGAAGCTTCCGGAACCCTTGCAGAAGGTA < 41bp 0.751801406852008 0.502508003415224 0.3245037 0.57260627 prediction 0.498586806873569 Functional Loss - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107334908 chr7:107334909 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_65514 0 0 0 0 2 SLC26A4 chr7:107334925 5'GT 107334925 Upstream 17bp
chr10 33134531 33134531 1 + C T READ 33134529 + 33134509 33134549 41 GGTCTAATGAAGGAGTCAACCACGACACAATTAAAAAGTCA GGTCTAATGAAGGAGTCAACCATGACACAATTAAAAAGTCA < 41bp 0.749292644912431 0.488621032375078 0.22205779 0.32265818 prediction 0.498585289824863 Functional Loss - CCDC7 ENSG00000150076 CDS Human other chr10:33134529 chr10:33134531 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_65515 0 0 0 1 2 CCDC7 chr10:33134471 3'AG 33134471 Downstream 61bp
chr10 33134531 33134531 1 + C T READ 33134529 + 33134509 33134549 41 GGTCTAATGAAGGAGTCAACCACGACACAATTAAAAAGTCA GGTCTAATGAAGGAGTCAACCATGACACAATTAAAAAGTCA < 41bp 0.749292644912431 0.488621032375078 0.22205779 0.32265818 prediction 0.498585289824863 Functional Loss - CCDC7 ENSG00000150076 CDS Human other chr10:33134529 chr10:33134531 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_65515 0 0 0 1 2 CCDC7 chr10:33134554 5'GT 33134554 Upstream 24bp
chr16 28847784 28847784 1 + G T LUSC 28847781 + 28847761 28847801 41 CCTCCCCAGCTCTCAGTGACCCCGACTGTCTCCTGACTTAG CCTCCCCAGCTCTCAGTGACCCCTACTGTCTCCTGACTTAG < 41bp 0.749287456238984 0.373743203477092 0.09968874 0.11202803 prediction 0.498574912477969 Functional Loss - ATXN2L ENSG00000168488 CDS Human antisense chr16:28847781 chr16:28847784 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_65517 0 0 1 0 1 ATXN2L chr16:28847811 5'GT 28847811 Upstream 28bp
chr16 28847783 28847783 1 + C T UCEC 28847781 + 28847761 28847801 41 CCTCCCCAGCTCTCAGTGACCCCGACTGTCTCCTGACTTAG CCTCCCCAGCTCTCAGTGACCCTGACTGTCTCCTGACTTAG < 41bp 0.749287456238984 0.497172879018097 0.09968874 0.039487094 prediction 0.498574912477969 Functional Loss - ATXN2L ENSG00000168488 CDS Human antisense chr16:28847781 chr16:28847783 synonymous SNV . 0 23 hm5C_associated_SNPs_65518 0 0 1 0 1 ATXN2L chr16:28847811 5'GT 28847811 Upstream 29bp
chr2 233244553 233244553 1 + C T STAD 233244551 + 233244531 233244571 41 CCTACGCCCACACGGTGAACCGCAACTGGTACTCGGACGCC CCTACGCCCACACGGTGAACCGTAACTGGTACTCGGACGCC < 41bp 0.784199937489281 0.534913863540232 0.8409384 0.3775644 prediction 0.498572147898098 Functional Loss - ALPP ENSG00000163283 CDS Human protein_coding chr2:233244551 chr2:233244553 synonymous SNV . 0 23 hm5C_associated_SNPs_65519 0 0 0 0 2 ALPP chr2:233244474 3'AG 233244474 Downstream 80bp
chr2 233244553 233244553 1 + C T STAD 233244551 + 233244531 233244571 41 CCTACGCCCACACGGTGAACCGCAACTGGTACTCGGACGCC CCTACGCCCACACGGTGAACCGTAACTGGTACTCGGACGCC < 41bp 0.784199937489281 0.534913863540232 0.8409384 0.3775644 prediction 0.498572147898098 Functional Loss - ALPP ENSG00000163283 CDS Human protein_coding chr2:233244551 chr2:233244553 synonymous SNV . 0 23 hm5C_associated_SNPs_65519 0 0 0 0 2 ALPP chr2:233244646 5'GT 233244646 Upstream 94bp
chr11 10786142 10786142 1 + C T rs3736326 10786140 + 10786120 10786160 41 GTGCAAAAGCAGAAGCGGAACACGATGAGCATTACTATAAC GTGCAAAAGCAGAAGCGGAACATGATGAGCATTACTATAAC < 41bp 0.830330518087426 0.581060376210401 0.06543076 0.109378695 prediction 0.49854028375405 Functional Loss - CTR9 ENSG00000198730 CDS Human protein_coding chr11:10786140 chr11:10786142 synonymous SNV . 0 23 hm5C_associated_SNPs_65521 0 0 0 0 1 CTR9 chr11:10786095 3'AG 10786095 Downstream 48bp
chr8 133912567 133912567 1 + C T BRCA 133912565 + 133912545 133912585 41 GGAGAAGAGTTGCGGCCTGGCTCGAGCAGCAGTGCCCAGTG GGAGAAGAGTTGCGGCCTGGCTTGAGCAGCAGTGCCCAGTG < 41bp 0.757159516487158 0.507891002218975 0.08427331 0.061503053 prediction 0.498537028536366 Functional Loss - TG ENSG00000042832 CDS Human protein_coding chr8:133912565 chr8:133912567 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_65523 0 0 0 0 1 TG chr8:133912482 3'AG 133912482 Downstream 86bp
chr19 41597759 41597759 1 + G C LUSC 41597755 + 41597735 41597775 41 GGTGGAGCACAACCAGCGCACGCTGGATCCCAATTCCCCAC GGTGGAGCACAACCAGCGCACGCTCGATCCCAATTCCCCAC < 41bp 0.749252012456788 0.460001163399304 0.11363307 0.05648297 prediction 0.498504024913576 Functional Loss - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41597755 chr19:41597759 synonymous SNV . 0 25 hm5C_associated_SNPs_65531 0 0 0 0 1 CYP2A13 chr19:41597813 5'GT 41597813 Upstream 55bp
chr12 40689398 40689398 1 + G T STAD 40689396 + 40689376 40689416 41 ATTTGGAGCATCTTGAAAAGCTGGAGCTTCACCAGAATGCA ATTTGGAGCATCTTGAAAAGCTTGAGCTTCACCAGAATGCA < 41bp 0.74924997122087 0.433784568778442 0.086083114 0.013513267 prediction 0.498499942441741 Functional Loss - LRRK2 ENSG00000188906 CDS Human protein_coding chr12:40689396 chr12:40689398 synonymous SNV . 0 23 hm5C_associated_SNPs_65532 0 0 0 0 1 LRRK2 chr12:40689446 5'GT 40689446 Upstream 49bp
chr3 119190201 119190201 1 + G T UCEC 119190198 + 119190178 119190218 41 CCTTTCCGAGGAGGCATCTCCAGGAAGATGATGGCAGAGGT CCTTTCCGAGGAGGCATCTCCAGTAAGATGATGGCAGAGGT < 41bp 0.894335674350252 0.64508607361067 0.7836223 0.20285508 prediction 0.498499201479164 Functional Loss - POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119190198 chr3:119190201 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_65533 0 0 1 0 1 POGLUT1 chr3:119190299 5'GT 119190299 Upstream 99bp
chr11 131781519 131781519 1 + G T rs75710163 131781517 + 131781497 131781537 41 CTATGGACAACGTGACGGTCCGGCAGGGGGAGAGCGCCACC CTATGGACAACGTGACGGTCCGTCAGGGGGAGAGCGCCACC < 41bp 0.749248741334996 0.482467312409255 0.43106794 0.3277596 prediction 0.498497482669992 Functional Loss - NTM ENSG00000182667 CDS Human protein_coding chr11:131781517 chr11:131781519 synonymous SNV . 0 23 hm5C_associated_SNPs_65534 0 0 0 0 2 NTM chr11:131781458 3'AG 131781458 Downstream 62bp
chr11 131781519 131781519 1 + G T rs75710163 131781517 + 131781497 131781537 41 CTATGGACAACGTGACGGTCCGGCAGGGGGAGAGCGCCACC CTATGGACAACGTGACGGTCCGTCAGGGGGAGAGCGCCACC < 41bp 0.749248741334996 0.482467312409255 0.43106794 0.3277596 prediction 0.498497482669992 Functional Loss - NTM ENSG00000182667 CDS Human protein_coding chr11:131781517 chr11:131781519 synonymous SNV . 0 23 hm5C_associated_SNPs_65534 0 0 0 0 2 NTM chr11:131781542 5'GT 131781542 Upstream 24bp
chr12 8333320 8333320 1 + A C rs753874806 8333316 + 8333296 8333336 41 AAGGAGCGCCCAGAGGCCGGCGGGAGCTCCAGGTTCACCTC AAGGAGCGCCCAGAGGCCGGCGGGCGCTCCAGGTTCACCTC < 41bp 0.889555370533422 0.640315125848363 0.92955923 0.91202676 prediction 0.498480489370118 Functional Loss - FAM66C ENSG00000226711 ncRNA_exonic Human antisense chr12:8333316 chr12:8333320 . . 0 25 hm5C_associated_SNPs_65536 0 0 0 0 1 FAM66C chr12:8333348 5'GT 8333348 Upstream 29bp
chr20 24565601 24565601 1 + G C BLCA 24565597 + 24565577 24565617 41 TGCTCTGCTGCTTCTGGCCTCTGGGCATCGCAGCCTTCTAC TGCTCTGCTGCTTCTGGCCTCTGGCCATCGCAGCCTTCTAC < 41bp 0.749230968578056 0.462692342288934 0.21032467 0.086848676 prediction 0.498461937156113 Functional Loss - SYNDIG1 ENSG00000101463 CDS Human protein_coding chr20:24565597 chr20:24565601 nonsynonymous SNV 0.964 5 25 hm5C_associated_SNPs_65538 0 0 0 0 1 SYNDIG1 chr20:24565629 5'GT 24565629 Upstream 29bp
chr2 7154633 7154633 1 + G T UCEC 7154631 + 7154611 7154651 41 GATCAAAGAAGGATTAGAAACTGCAATTAGCTGCCCAGATG GATCAAAGAAGGATTAGAAACTTCAATTAGCTGCCCAGATG < 41bp 0.867765904273638 0.61853712777659 0.1706751 0.14752564 prediction 0.498457552994096 Functional Loss - RNF144A ENSG00000151692 CDS Human protein_coding chr2:7154631 chr2:7154633 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_65539 0 0 0 0 1 RNF144A chr2:7154585 3'AG 7154585 Downstream 49bp
chr1 234765416 234765416 1 + A T rs645181 234765412 + 234765392 234765432 41 TGTTGAAGGTGAAAGAGGCACAAGATAGAAGAAACCTGGGT TGTTGAAGGTGAAAGAGGCACAAGTTAGAAGAAACCTGGGT < 41bp 0.749218722530508 0.480540775881564 0.46170878 0.3196711 prediction 0.498437445061017 Functional Loss - LINC00184 ENSG00000224939 ncRNA_exonic Human lincRNA chr1:234765412 chr1:234765416 . . 0 25 hm5C_associated_SNPs_65541 0 0 0 0 1 LINC00184 chr1:234765493 5'GT 234765493 Upstream 78bp
chr7 143079460 143079460 1 + G T PAAD 143079457 + 143079437 143079477 41 AATCATTTCCCCCTGCGCCTCTGGAGGAGGAGATCTTCCCT AATCATTTCCCCCTGCGCCTCTGTAGGAGGAGATCTTCCCT < 41bp 0.910822728481577 0.66160439751491 0.4333139 0.20435977 prediction 0.498436661933334 Functional Loss - ZYX ENSG00000159840 CDS Human protein_coding chr7:143079457 chr7:143079460 stopgain 1.000 0 24 hm5C_associated_SNPs_65542 0 0 1 0 1 ZYX chr7:143079540 5'GT 143079540 Upstream 81bp
chr7 23239850 23239850 1 + G T LUSC 23239847 + 23239827 23239867 41 CTTTAGTTTTAAAACAAACTCTGGATTTGCTGCTGCCTCTT CTTTAGTTTTAAAACAAACTCTGTATTTGCTGCTGCCTCTT < 41bp 0.90980961428868 0.660596776853972 0.2691064 0.06863031 prediction 0.498425674869415 Functional Loss - NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23239847 chr7:23239850 nonsynonymous SNV 0.584 0 24 hm5C_associated_SNPs_65543 0 0 1 6 1 NUPL2 chr7:23239787 3'AG 23239787 Downstream 64bp
chr3 132211293 132211293 1 + C T SARC 132211291 + 132211271 132211311 41 GAGAAGATTGCTGCCCATCTCGCGGATTTCACACCTCGTCT GAGAAGATTGCTGCCCATCTCGTGGATTTCACACCTCGTCT < 41bp 0.769132119737765 0.519925315824303 0.89001805 0.89410436 prediction 0.498413607826923 Functional Loss - DNAJC13 ENSG00000138246 CDS Human protein_coding chr3:132211291 chr3:132211293 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_65546 0 0 0 0 1 DNAJC13 chr3:132211258 3'AG 132211258 Downstream 36bp
chr6 123101544 123101544 1 + C T rs2279381 123101542 + 123101522 123101562 41 ACTCTCAGCACATTCAAGAACACGGAGATTAGTTTCCAGCT ACTCTCAGCACATTCAAGAACATGGAGATTAGTTTCCAGCT < 41bp 0.7843446870464 0.535139407473685 0.37035847 0.38282204 prediction 0.49841055914543 Functional Loss - FABP7 ENSG00000164434 CDS Human protein_coding chr6:123101542 chr6:123101544 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_65547 0 0 0 0 1 FABP7 chr6:123101608 5'GT 123101608 Upstream 65bp
chr11 134131182 134131182 1 + G T UCEC 134131180 + 134131160 134131200 41 CCCCTCTAGCTTCCTGCTCCCTGGGGGCTGCCCACGCCTCT CCCCTCTAGCTTCCTGCTCCCTTGGGGCTGCCCACGCCTCT < 41bp 0.895926506743831 0.64672130539196 0.40036622 0.06960523 prediction 0.498410402703743 Functional Loss - ACAD8 ENSG00000151498 CDS Human protein_coding chr11:134131180 chr11:134131182 synonymous SNV . 0 23 hm5C_associated_SNPs_65548 0 0 1 0 2 ACAD8 chr11:134131169 3'AG 134131169 Downstream 14bp
chr11 134131182 134131182 1 + G T UCEC 134131180 + 134131160 134131200 41 CCCCTCTAGCTTCCTGCTCCCTGGGGGCTGCCCACGCCTCT CCCCTCTAGCTTCCTGCTCCCTTGGGGCTGCCCACGCCTCT < 41bp 0.895926506743831 0.64672130539196 0.40036622 0.06960523 prediction 0.498410402703743 Functional Loss - ACAD8 ENSG00000151498 CDS Human protein_coding chr11:134131180 chr11:134131182 synonymous SNV . 0 23 hm5C_associated_SNPs_65548 0 0 1 0 2 ACAD8 chr11:134131266 5'GT 134131266 Upstream 85bp
chr2 112686742 112686742 1 + C T rs150870104 112686740 + 112686720 112686760 41 GCCAAGCCTTACCCGCTATTCCCGGGACCTTTTCCAGGGAG GCCAAGCCTTACCCGCTATTCCTGGGACCTTTTCCAGGGAG < 41bp 0.772038263524273 0.522845250041828 0.39921746 0.35159504 prediction 0.49838602696489 Functional Loss - MERTK ENSG00000153208 CDS Human protein_coding chr2:112686740 chr2:112686742 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_65551 0 0 1 0 1 MERTK chr2:112686697 3'AG 112686697 Downstream 46bp
chr13 113819434 113819434 1 + G T UCEC 113819432 + 113819412 113819452 41 ATCTACAGGACCTCCCGTGGCAGGTAACAGAGCGCTCTCCG ATCTACAGGACCTCCCGTGGCATGTAACAGAGCGCTCTCCG < 41bp 0.74918474208627 0.396799254041149 0.8396951 0.054896355 prediction 0.498369484172539 Functional Loss - PROZ ENSG00000126231 CDS Human protein_coding chr13:113819432 chr13:113819434 nonsynonymous SNV 0.632 4 23 hm5C_associated_SNPs_65555 0 0 0 0 2 PROZ chr13:113819367 3'AG 113819367 Downstream 68bp
chr13 113819434 113819434 1 + G T UCEC 113819432 + 113819412 113819452 41 ATCTACAGGACCTCCCGTGGCAGGTAACAGAGCGCTCTCCG ATCTACAGGACCTCCCGTGGCATGTAACAGAGCGCTCTCCG < 41bp 0.74918474208627 0.396799254041149 0.8396951 0.054896355 prediction 0.498369484172539 Functional Loss - PROZ ENSG00000126231 CDS Human protein_coding chr13:113819432 chr13:113819434 nonsynonymous SNV 0.632 4 23 hm5C_associated_SNPs_65555 0 0 0 0 2 PROZ chr13:113819434 5'GT 113819434 Upstream 1bp
chr19 4355134 4355134 1 + C T rs201982212 4355132 + 4355112 4355152 41 CCTTCCCTTGTCGGAGCCGGCTCGGGGACGCAGAGACTGCA CCTTCCCTTGTCGGAGCCGGCTTGGGGACGCAGAGACTGCA < 41bp 0.767824683705551 0.51864757804306 0.6745758 0.50488794 prediction 0.498354211324982 Functional Loss - MPND ENSG00000008382 CDS Human protein_coding chr19:4355132 chr19:4355134 synonymous SNV . 0 23 hm5C_associated_SNPs_65559 0 0 0 0 2 MPND chr19:4355094 3'AG 4355094 Downstream 41bp
chr19 4355134 4355134 1 + C T rs201982212 4355132 + 4355112 4355152 41 CCTTCCCTTGTCGGAGCCGGCTCGGGGACGCAGAGACTGCA CCTTCCCTTGTCGGAGCCGGCTTGGGGACGCAGAGACTGCA < 41bp 0.767824683705551 0.51864757804306 0.6745758 0.50488794 prediction 0.498354211324982 Functional Loss - MPND ENSG00000008382 CDS Human protein_coding chr19:4355132 chr19:4355134 synonymous SNV . 0 23 hm5C_associated_SNPs_65559 0 0 0 0 2 MPND chr19:4355170 5'GT 4355170 Upstream 37bp
chr6 33258148 33258148 1 + G T TGCT 33258145 + 33258125 33258165 41 CCAACGTGGTCTTTAAACTTCTGGGTCCGGTGCTAGTCAAA CCAACGTGGTCTTTAAACTTCTGTGTCCGGTGCTAGTCAAA < 41bp 0.88017708067426 0.631017066612908 0.40504253 0.12579775 prediction 0.498320028122704 Functional Loss - PFDN6 ENSG00000204220 CDS Human protein_coding chr6:33258145 chr6:33258148 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_65563 0 0 1 0 2 PFDN6 chr6:33258103 3'AG 33258103 Downstream 46bp
chr6 33258148 33258148 1 + G T TGCT 33258145 + 33258125 33258165 41 CCAACGTGGTCTTTAAACTTCTGGGTCCGGTGCTAGTCAAA CCAACGTGGTCTTTAAACTTCTGTGTCCGGTGCTAGTCAAA < 41bp 0.88017708067426 0.631017066612908 0.40504253 0.12579775 prediction 0.498320028122704 Functional Loss - PFDN6 ENSG00000204220 CDS Human protein_coding chr6:33258145 chr6:33258148 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_65563 0 0 1 0 2 PFDN6 chr6:33258227 5'GT 33258227 Upstream 80bp
chr17 7158042 7158042 1 + T C BRCA 7158041 + 7158021 7158061 41 TCACCATTGCTCTCGATTCACTCAGCTGGCTGCTACTTCGC TCACCATTGCTCTCGATTCACCCAGCTGGCTGCTACTTCGC < 41bp 0.784839351290317 0.535679401483452 0.097617894 0.045051247 prediction 0.498319899613729 Functional Loss - ELP5 ENSG00000170291 CDS Human protein_coding chr17:7158041 chr17:7158042 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_65564 0 0 1 0 1 ELP5 chr17:7158122 5'GT 7158122 Upstream 81bp
chr2 179447787 179447787 1 + G T rs62618736 179447785 + 179447765 179447805 41 TCCAAGGTGCACAGATTCCGCTGCATGGCCATCTTTATGCC TCCAAGGTGCACAGATTCCGCTTCATGGCCATCTTTATGCC < 41bp 0.749159775117993 0.442364777268356 0.09815717 0.05172372 prediction 0.498319550235986 Functional Loss - TTN ENSG00000155657 CDS Human protein_coding chr2:179447785 chr2:179447787 nonsynonymous SNV 0.991 0 23 hm5C_associated_SNPs_65565 9 0 0 0 1 TTN chr2:179447718 3'AG 179447718 Downstream 70bp
chr9 130197442 130197442 1 + G A rs192043906 130197439 + 130197419 130197459 41 GAGGTGCCTCGTGTCTACTCCACGGGACAGGTTCAAGGAGG GAGGTGCCTCGTGTCTACTCCACAGGACAGGTTCAAGGAGG < 41bp 0.754512637765234 0.505357014164347 0.546829 0.235796 prediction 0.498311247201773 Functional Loss - ZNF79 ENSG00000196152 CDS Human protein_coding chr9:130197439 chr9:130197442 nonsynonymous SNV 0.009 1 24 hm5C_associated_SNPs_65566 0 0 1 0 2 ZNF79 chr9:130197369 3'AG 130197369 Downstream 74bp
chr9 130197442 130197442 1 + G A rs192043906 130197439 + 130197419 130197459 41 GAGGTGCCTCGTGTCTACTCCACGGGACAGGTTCAAGGAGG GAGGTGCCTCGTGTCTACTCCACAGGACAGGTTCAAGGAGG < 41bp 0.754512637765234 0.505357014164347 0.546829 0.235796 prediction 0.498311247201773 Functional Loss - ZNF79 ENSG00000196152 CDS Human protein_coding chr9:130197439 chr9:130197442 nonsynonymous SNV 0.009 1 24 hm5C_associated_SNPs_65566 0 0 1 0 2 ZNF79 chr9:130197495 5'GT 130197495 Upstream 54bp
chr17 78225191 78225191 1 + G T BLCA 78225188 + 78225168 78225208 41 GGTTCCAGTACTTCTCTACCCTGGAAGAAGCAGGTGGGCAC GGTTCCAGTACTTCTCTACCCTGTAAGAAGCAGGTGGGCAC < 41bp 0.913531243433379 0.664375807380195 0.34092623 0.10391232 prediction 0.498310872106368 Functional Loss - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78225188 chr17:78225191 stopgain 0.010 1 24 hm5C_associated_SNPs_65567 0 0 0 0 2 SLC26A11 chr17:78225128 3'AG 78225128 Downstream 64bp
chr17 78225191 78225191 1 + G T BLCA 78225188 + 78225168 78225208 41 GGTTCCAGTACTTCTCTACCCTGGAAGAAGCAGGTGGGCAC GGTTCCAGTACTTCTCTACCCTGTAAGAAGCAGGTGGGCAC < 41bp 0.913531243433379 0.664375807380195 0.34092623 0.10391232 prediction 0.498310872106368 Functional Loss - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78225188 chr17:78225191 stopgain 0.010 1 24 hm5C_associated_SNPs_65567 0 0 0 0 2 SLC26A11 chr17:78225200 5'GT 78225200 Upstream 10bp
chr1 10460621 10460621 1 + G C CESC 10460620 + 10460600 10460640 41 CAAGCTGTGGATGATTTCATCGAGAAATTGGTGAGGCCAGC CAAGCTGTGGATGATTTCATCCAGAAATTGGTGAGGCCAGC < 41bp 0.853643544182548 0.604490284883382 0.82606417 0.28260747 prediction 0.498306518598333 Functional Loss - PGD ENSG00000142657 CDS Human protein_coding chr1:10460620 chr1:10460621 nonsynonymous SNV 0.811 0 22 hm5C_associated_SNPs_65571 0 0 0 0 1 PGD chr1:10460629 5'GT 10460629 Upstream 9bp
chr19 35530797 35530797 1 + A T rs72550274 35530793 + 35530773 35530813 41 GGGTGGCCACTCCTGGGCCCCAGAAAGCCTCAGAGTCCTGC GGGTGGCCACTCCTGGGCCCCAGATAGCCTCAGAGTCCTGC < 41bp 0.827766476878401 0.578613845840286 0.12685603 0.1637255 prediction 0.498305262076231 Functional Loss - SCN1B ENSG00000105711 UTR3 Human protein_coding chr19:35530793 chr19:35530797 . . 0 25 hm5C_associated_SNPs_65572 0 0 0 0 1 SCN1B chr19:35530701 3'AG 35530701 Downstream 97bp
chr11 60885726 60885726 1 + G A BRCA 60885723 + 60885703 60885743 41 TACCTCAAGGACGGATGGCACATGGTTTGCAGCCAGAGCTG TACCTCAAGGACGGATGGCACATAGTTTGCAGCCAGAGCTG < 41bp 0.759601294333368 0.510451480430461 0.26155955 0.098214924 prediction 0.498299627805814 Functional Loss - CD5 ENSG00000110448 CDS Human protein_coding chr11:60885723 chr11:60885726 nonsynonymous SNV 0.056 1 24 hm5C_associated_SNPs_65573 0 0 0 0 1 CD5 chr11:60885647 3'AG 60885647 Downstream 80bp
chr3 44666593 44666593 1 + G C rs535412882 44666589 + 44666569 44666609 41 GTCATCTCCTAGCGGCCTGGCGCCGAGGCGGCGGTACGCAA GTCATCTCCTAGCGGCCTGGCGCCCAGGCGGCGGTACGCAA < 41bp 0.749139273930756 0.494168533523459 0.4109417 0.05725041 prediction 0.498278547861513 Functional Loss - ZNF197 ENSG00000236869 ncRNA_intronic Human antisense chr3:44666589 chr3:44666593 . . 0 25 hm5C_associated_SNPs_65575 0 0 1 0 1 ZNF197 chr3:44666635 5'GT 44666635 Upstream 43bp
chr17 76198810 76198810 1 + G A rs143041961 76198807 + 76198787 76198827 41 TGCCTTTCTTCCTGTTCTTTCACGGAGGATACTGGCAGAGC TGCCTTTCTTCCTGTTCTTTCACAGAGGATACTGGCAGAGC < 41bp 0.749124786339254 0.497783356551288 0.55612487 0.19285196 prediction 0.498249572678508 Functional Loss - AFMID ENSG00000183077 CDS Human protein_coding chr17:76198807 chr17:76198810 nonsynonymous SNV 0.557 4 24 hm5C_associated_SNPs_65580 0 0 1 0 2 AFMID chr17:76198784 3'AG 76198784 Downstream 27bp
chr17 76198810 76198810 1 + G A rs143041961 76198807 + 76198787 76198827 41 TGCCTTTCTTCCTGTTCTTTCACGGAGGATACTGGCAGAGC TGCCTTTCTTCCTGTTCTTTCACAGAGGATACTGGCAGAGC < 41bp 0.749124786339254 0.497783356551288 0.55612487 0.19285196 prediction 0.498249572678508 Functional Loss - AFMID ENSG00000183077 CDS Human protein_coding chr17:76198807 chr17:76198810 nonsynonymous SNV 0.557 4 24 hm5C_associated_SNPs_65580 0 0 1 0 2 AFMID chr17:76198832 5'GT 76198832 Upstream 23bp
chr16 28836700 28836700 1 + G T COAD 28836698 + 28836678 28836718 41 CTTTTATAGGGGACAGAGCACAGGAAAGGGACCCCCACAGT CTTTTATAGGGGACAGAGCACATGAAAGGGACCCCCACAGT < 41bp 0.873310025992477 0.624192752203326 0.34968057 0.16579023 prediction 0.498234547578302 Functional Loss - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28836698 chr16:28836700 stopgain 0.998 1 23 hm5C_associated_SNPs_65583 0 0 1 0 2 ATXN2L chr16:28836687 3'AG 28836687 Downstream 14bp
chr16 28836700 28836700 1 + G T COAD 28836698 + 28836678 28836718 41 CTTTTATAGGGGACAGAGCACAGGAAAGGGACCCCCACAGT CTTTTATAGGGGACAGAGCACATGAAAGGGACCCCCACAGT < 41bp 0.873310025992477 0.624192752203326 0.34968057 0.16579023 prediction 0.498234547578302 Functional Loss - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28836698 chr16:28836700 stopgain 0.998 1 23 hm5C_associated_SNPs_65583 0 0 1 0 2 ATXN2L chr16:28836723 5'GT 28836723 Upstream 24bp
chrX 21861421 21861421 1 + G T UCEC 21861418 + 21861398 21861438 41 CAGTTGGGGACGGCGGAAAGCAAGGATGCTTTACCAATGGT CAGTTGGGGACGGCGGAAAGCAATGATGCTTTACCAATGGT < 41bp 0.74911352336325 0.363739663707534 0.64338285 0.20251966 prediction 0.498227046726499 Functional Loss - MBTPS2 ENSG00000012174 CDS Human protein_coding chrX:21861418 chrX:21861421 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_65585 0 0 0 0 1 MBTPS2 chrX:21861436 5'GT 21861436 Upstream 16bp
chr11 75507520 75507520 1 + G T LUAD 75507517 + 75507497 75507537 41 TCCCAGGCATACGGCCTTACCTGGCTACACTGGCAGGCAAC TCCCAGGCATACGGCCTTACCTGTCTACACTGGCAGGCAAC < 41bp 0.74911108449183 0.347924822538494 0.33820355 0.23443139 prediction 0.498222168983659 Functional Loss - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75507517 chr11:75507520 nonsynonymous SNV 0.854 3 24 hm5C_associated_SNPs_65586 0 0 0 0 1 DGAT2 chr11:75507577 5'GT 75507577 Upstream 58bp
chr16 72107865 72107865 1 + C T rs11642506 72107863 + 72107843 72107883 41 CTGTACTCAGGCAATGATGTCACGGATATTTCAGGTCAGTC CTGTACTCAGGCAATGATGTCATGGATATTTCAGGTCAGTC < 41bp 0.74911014864447 0.496921549902617 0.3091917 0.39046156 prediction 0.498220297288941 Functional Loss - HPR ENSG00000261701 CDS Human protein_coding chr16:72107863 chr16:72107865 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_65588 0 0 0 0 2 HPR chr16:72107791 3'AG 72107791 Downstream 75bp
chr16 72107865 72107865 1 + C T rs11642506 72107863 + 72107843 72107883 41 CTGTACTCAGGCAATGATGTCACGGATATTTCAGGTCAGTC CTGTACTCAGGCAATGATGTCATGGATATTTCAGGTCAGTC < 41bp 0.74911014864447 0.496921549902617 0.3091917 0.39046156 prediction 0.498220297288941 Functional Loss - HPR ENSG00000261701 CDS Human protein_coding chr16:72107863 chr16:72107865 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_65588 0 0 0 0 2 HPR chr16:72107876 5'GT 72107876 Upstream 12bp
chr3 115395382 115395382 1 + G C BLCA 115395378 + 115395358 115395398 41 GCTGCTGCCACCACCCCTGCCGCAGAGGATGCTGCTGCCAA GCTGCTGCCACCACCCCTGCCGCACAGGATGCTGCTGCCAA < 41bp 0.749097005137566 0.475979271478973 0.31437436 0.052511066 prediction 0.498194010275131 Functional Loss - GAP43 ENSG00000172020 CDS Human protein_coding chr3:115395378 chr3:115395382 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_65592 0 0 0 0 1 GAP43 chr3:115395457 5'GT 115395457 Upstream 76bp
chr12 53819661 53819661 1 + C T UCEC 53819659 + 53819639 53819679 41 CCAGCCGGGGGGGTCCTGGCCGCCTGCTCTCTGGGCCCCTG CCAGCCGGGGGGGTCCTGGCCGTCTGCTCTCTGGGCCCCTG < 41bp 0.781213281892921 0.532121489763927 0.09142989 0.0818277 prediction 0.49818358425799 Functional Loss - AMHR2 ENSG00000135409 CDS Human protein_coding chr12:53819659 chr12:53819661 synonymous SNV . 0 23 hm5C_associated_SNPs_65593 0 0 0 0 1 AMHR2 chr12:53819703 5'GT 53819703 Upstream 43bp
chr4 170625197 170625197 1 + G C PRAD 170625193 + 170625173 170625213 41 AGCATGGCCATTGGAGCGATCGCAGGAAGGATTGTGGGGAT AGCATGGCCATTGGAGCGATCGCACGAAGGATTGTGGGGAT < 41bp 0.749086099924746 0.471709472220388 0.90604615 0.31599903 prediction 0.498172199849492 Functional Loss - CLCN3 ENSG00000109572 CDS Human protein_coding chr4:170625193 chr4:170625197 nonsynonymous SNV 0.557 5 25 hm5C_associated_SNPs_65596 0 0 1 0 1 CLCN3 chr4:170625149 3'AG 170625149 Downstream 49bp
chr12 72366481 72366481 1 + C T STAD 72366479 + 72366459 72366499 41 GTGCCTCAACTCGAAGATGTCTCCATGTTTCTGAAAGGTAA GTGCCTCAACTCGAAGATGTCTTCATGTTTCTGAAAGGTAA < 41bp 0.749081956359386 0.452926864845038 0.95011663 0.1071057 prediction 0.498163912718771 Functional Loss - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72366479 chr12:72366481 nonsynonymous SNV 0.194 5 23 hm5C_associated_SNPs_65597 0 0 0 0 1 TPH2 chr12:72366495 5'GT 72366495 Upstream 15bp
chr17 34913103 34913103 1 + A C COAD 34913102 + 34913082 34913122 41 GAACCCCTAACAGTAGGGCCCAAGGGAGTCCTGTCTGTAAC GAACCCCTAACAGTAGGGCCCCAGGGAGTCCTGTCTGTAAC < 41bp 0.749078773833085 0.491497704150631 0.81624234 0.552967 prediction 0.498157547666169 Functional Loss - GGNBP2 ENSG00000005955 CDS Human other chr17:34913102 chr17:34913103 nonsynonymous SNV 0.999 0 22 hm5C_associated_SNPs_65598 0 0 1 0 1 GGNBP2 chr17:34913176 5'GT 34913176 Upstream 74bp
chr17 34913105 34913105 1 + G T STAD 34913102 + 34913082 34913122 41 GAACCCCTAACAGTAGGGCCCAAGGGAGTCCTGTCTGTAAC GAACCCCTAACAGTAGGGCCCAATGGAGTCCTGTCTGTAAC < 41bp 0.749078773833085 0.356314849707761 0.81624234 0.102273345 prediction 0.498157547666169 Functional Loss - GGNBP2 ENSG00000005955 CDS Human other chr17:34913102 chr17:34913105 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_65599 0 0 1 0 1 GGNBP2 chr17:34913176 5'GT 34913176 Upstream 72bp
chr16 67574376 67574376 1 + C T UCEC 67574374 + 67574354 67574394 41 AACTCAGGGCTGGCTGGCTTCGCCAGGCTGTGTGTAGGCGA AACTCAGGGCTGGCTGGCTTCGTCAGGCTGTGTGTAGGCGA < 41bp 0.80856474158067 0.559497784904426 0.587411 0.23184216 prediction 0.498133913352488 Functional Loss - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67574374 chr16:67574376 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_65600 0 0 1 0 2 RIPOR1 chr16:67574361 3'AG 67574361 Downstream 16bp
chr16 67574376 67574376 1 + C T UCEC 67574374 + 67574354 67574394 41 AACTCAGGGCTGGCTGGCTTCGCCAGGCTGTGTGTAGGCGA AACTCAGGGCTGGCTGGCTTCGTCAGGCTGTGTGTAGGCGA < 41bp 0.80856474158067 0.559497784904426 0.587411 0.23184216 prediction 0.498133913352488 Functional Loss - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67574374 chr16:67574376 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_65600 0 0 1 0 2 RIPOR1 chr16:67574404 5'GT 67574404 Upstream 29bp
chr19 13923903 13923903 1 + G A UCEC 13923900 + 13923880 13923920 41 TACTCAGCAGGTGGGACAAGCTCGACGTCTGCCCACTGGAA TACTCAGCAGGTGGGACAAGCTCAACGTCTGCCCACTGGAA < 41bp 0.752121923558537 0.503062120128903 0.68207216 0.79567647 prediction 0.498119606859267 Functional Loss - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13923900 chr19:13923903 nonsynonymous SNV 0.466 0 24 hm5C_associated_SNPs_65601 0 0 0 0 2 ZSWIM4 chr19:13923811 3'AG 13923811 Downstream 93bp
chr19 13923903 13923903 1 + G A UCEC 13923900 + 13923880 13923920 41 TACTCAGCAGGTGGGACAAGCTCGACGTCTGCCCACTGGAA TACTCAGCAGGTGGGACAAGCTCAACGTCTGCCCACTGGAA < 41bp 0.752121923558537 0.503062120128903 0.68207216 0.79567647 prediction 0.498119606859267 Functional Loss - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13923900 chr19:13923903 nonsynonymous SNV 0.466 0 24 hm5C_associated_SNPs_65601 0 0 0 0 2 ZSWIM4 chr19:13923978 5'GT 13923978 Upstream 76bp
chr15 39881542 39881542 1 + C T rs571287917 39881540 + 39881520 39881560 41 GGCCAGGGTGTCGAACATGCCACGGCCAACAAACAGGTACA GGCCAGGGTGTCGAACATGCCATGGCCAACAAACAGGTACA < 41bp 0.749028074213164 0.490171131725818 0.17973465 0.12025002 prediction 0.498056148426329 Functional Loss - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39881540 chr15:39881542 nonsynonymous SNV 0.761 0 23 hm5C_associated_SNPs_65608 0 0 1 0 1 THBS1 chr15:39881555 5'GT 39881555 Upstream 14bp
chr17 27014391 27014391 1 + G C LUSC 27014390 + 27014370 27014410 41 ATCAACCGAGTCAATGAGGTCGGGGTCGATGTCAACCGTGC ATCAACCGAGTCAATGAGGTCCGGGTCGATGTCAACCGTGC < 41bp 0.749024918626612 0.438326337490763 0.9114704 0.32122508 prediction 0.498049837253225 Functional Loss - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27014390 chr17:27014391 nonsynonymous SNV 0.983 4 22 hm5C_associated_SNPs_65609 0 0 1 0 2 SUPT6H chr17:27014322 3'AG 27014322 Downstream 70bp
chr17 27014391 27014391 1 + G C LUSC 27014390 + 27014370 27014410 41 ATCAACCGAGTCAATGAGGTCGGGGTCGATGTCAACCGTGC ATCAACCGAGTCAATGAGGTCCGGGTCGATGTCAACCGTGC < 41bp 0.749024918626612 0.438326337490763 0.9114704 0.32122508 prediction 0.498049837253225 Functional Loss - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27014390 chr17:27014391 nonsynonymous SNV 0.983 4 22 hm5C_associated_SNPs_65609 0 0 1 0 2 SUPT6H chr17:27014489 5'GT 27014489 Upstream 99bp
chr11 22360113 22360113 1 + G T COAD 22360111 + 22360091 22360131 41 AAAACAAAGGATTTTGGCCCCAGGAAAAGAGGGGCTAAAGA AAAACAAAGGATTTTGGCCCCATGAAAAGAGGGGCTAAAGA < 41bp 0.74901927181962 0.422426001345114 0.44913548 0.08848706 prediction 0.498038543639241 Functional Loss - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22360111 chr11:22360113 stopgain 0.994 1 23 hm5C_associated_SNPs_65610 0 0 0 0 1 SLC17A6 chr11:22360165 5'GT 22360165 Upstream 53bp
chr19 58965129 58965129 1 + G T LUSC 58965127 + 58965107 58965147 41 GGAGTGGGGGCTCCTGGACACAGCGCAGAGGGCCCTGTACC GGAGTGGGGGCTCCTGGACACATCGCAGAGGGCCCTGTACC < 41bp 0.749017552255496 0.395578581155222 0.29474533 0.12183687 prediction 0.498035104510991 Functional Loss - ZNF324B ENSG00000249471 CDS Human protein_coding chr19:58965127 chr19:58965129 nonsynonymous SNV 0.160 1 23 hm5C_associated_SNPs_65611 0 0 0 0 2 ZNF324B chr19:58965063 3'AG 58965063 Downstream 67bp
chr19 58965129 58965129 1 + G T LUSC 58965127 + 58965107 58965147 41 GGAGTGGGGGCTCCTGGACACAGCGCAGAGGGCCCTGTACC GGAGTGGGGGCTCCTGGACACATCGCAGAGGGCCCTGTACC < 41bp 0.749017552255496 0.395578581155222 0.29474533 0.12183687 prediction 0.498035104510991 Functional Loss - ZNF324B ENSG00000249471 CDS Human protein_coding chr19:58965127 chr19:58965129 nonsynonymous SNV 0.160 1 23 hm5C_associated_SNPs_65611 0 0 0 0 2 ZNF324B chr19:58965189 5'GT 58965189 Upstream 61bp
chr1 160318809 160318809 1 + G T UCEC 160318807 + 160318787 160318827 41 AGCTTCAATTAGTGGAGACACAGGGGTTATCCACGTAGTAG AGCTTCAATTAGTGGAGACACATGGGTTATCCACGTAGTAG < 41bp 0.883688130687833 0.63467906485781 0.89056313 0.28549165 prediction 0.498018131660046 Functional Loss - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160318807 chr1:160318809 nonsynonymous SNV 0.979 4 23 hm5C_associated_SNPs_65612 0 0 1 0 1 NCSTN chr1:160318789 3'AG 160318789 Downstream 21bp
chr1 175048495 175048495 1 + G C SKCM 175048494 + 175048474 175048514 41 AGCCGCCACTGCAGCGGCCACGGGACCTTCTCCCTGGAGAC AGCCGCCACTGCAGCGGCCACCGGACCTTCTCCCTGGAGAC < 41bp 0.869039393495647 0.620039525161259 0.6495271 0.47457924 prediction 0.497999736668775 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175048494 chr1:175048495 nonsynonymous SNV 0.830 4 22 hm5C_associated_SNPs_65614 0 0 0 0 1 TNN chr1:175048469 3'AG 175048469 Downstream 27bp
chr7 66413544 66413544 1 + C T UCEC 66413542 + 66413522 66413562 41 CTTTCATAGGCAGGGAAGCCCACGAGGAGATAAACATCACC CTTTCATAGGCAGGGAAGCCCATGAGGAGATAAACATCACC < 41bp 0.820692772502656 0.571696980957087 0.87047756 0.51558506 prediction 0.497991583091138 Functional Loss - TMEM248 ENSG00000106609 CDS Human protein_coding chr7:66413542 chr7:66413544 synonymous SNV . 0 23 hm5C_associated_SNPs_65615 0 0 1 2 1 TMEM248 chr7:66413531 3'AG 66413531 Downstream 14bp
chrX 155127890 155127890 1 + T C STAD 155127889 + 155127869 155127909 41 TATGCCATGAATAGCGAGTTCTCAAGTGTCTTAGCTGCACA TATGCCATGAATAGCGAGTTCCCAAGTGTCTTAGCTGCACA < 41bp 0.748993652664956 0.495197323675789 0.73145115 0.044540137 prediction 0.497987305329913 Functional Loss - VAMP7 ENSG00000124333 CDS Human protein_coding chrX:155127889 chrX:155127890 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_65616 0 0 1 0 1 VAMP7 chrX:155127913 5'GT 155127913 Upstream 24bp
chr17 47299500 47299500 1 + G T COAD 47299497 + 47299477 47299517 41 ACCTGCCTCCTCCTCCACCCCTGGATGGAGATGAATTGGGG ACCTGCCTCCTCCTCCACCCCTGTATGGAGATGAATTGGGG < 41bp 0.915290367378761 0.666301506426586 0.72345424 0.46683028 prediction 0.497977721904349 Functional Loss - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47299497 chr17:47299500 nonsynonymous SNV 0.206 1 24 hm5C_associated_SNPs_65618 0 0 0 0 2 ABI3 chr17:47299453 3'AG 47299453 Downstream 48bp
chr17 47299500 47299500 1 + G T COAD 47299497 + 47299477 47299517 41 ACCTGCCTCCTCCTCCACCCCTGGATGGAGATGAATTGGGG ACCTGCCTCCTCCTCCACCCCTGTATGGAGATGAATTGGGG < 41bp 0.915290367378761 0.666301506426586 0.72345424 0.46683028 prediction 0.497977721904349 Functional Loss - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47299497 chr17:47299500 nonsynonymous SNV 0.206 1 24 hm5C_associated_SNPs_65618 0 0 0 0 2 ABI3 chr17:47299587 5'GT 47299587 Upstream 88bp
chr12 6554618 6554618 1 + G T UCEC 6554616 + 6554596 6554636 41 TCCTCGTGAAGGACTGTGACCAGCATAGAAAGGCTGCTCAG TCCTCGTGAAGGACTGTGACCATCATAGAAAGGCTGCTCAG < 41bp 0.886271679170999 0.637286039498773 0.3342925 0.10127467 prediction 0.497971279344453 Functional Loss - CD27 ENSG00000139193 CDS Human protein_coding chr12:6554616 chr12:6554618 nonsynonymous SNV 0.027 1 23 hm5C_associated_SNPs_65620 0 0 0 0 1 CD27 chr12:6554590 3'AG 6554590 Downstream 29bp
chrX 51637403 51637403 1 + G T UCEC 51637400 + 51637380 51637420 41 CTTGCCAGAGGGACAGGAGCCATGGCTCAGAAAATGGACTG CTTGCCAGAGGGACAGGAGCCATTGCTCAGAAAATGGACTG < 41bp 0.7489687887612 0.492079192838381 0.2698211 0.52507937 prediction 0.497937577522399 Functional Loss - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51637400 chrX:51637403 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_65624 0 0 1 0 2 MAGED1 chrX:51637365 3'AG 51637365 Downstream 39bp
chrX 51637403 51637403 1 + G T UCEC 51637400 + 51637380 51637420 41 CTTGCCAGAGGGACAGGAGCCATGGCTCAGAAAATGGACTG CTTGCCAGAGGGACAGGAGCCATTGCTCAGAAAATGGACTG < 41bp 0.7489687887612 0.492079192838381 0.2698211 0.52507937 prediction 0.497937577522399 Functional Loss - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51637400 chrX:51637403 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_65624 0 0 1 0 2 MAGED1 chrX:51637445 5'GT 51637445 Upstream 43bp
chr11 60785322 60785322 1 + G C GBM 60785321 + 60785301 60785341 41 CCTGGGCCCTCAGTATCACCCGAGGAGCAACAGTGAGTCGA CCTGGGCCCTCAGTATCACCCCAGGAGCAACAGTGAGTCGA < 41bp 0.748958153802327 0.423520204730283 0.885948 0.20323238 prediction 0.497916307604653 Functional Loss - CD6 ENSG00000013725 CDS Human protein_coding chr11:60785321 chr11:60785322 synonymous SNV . 0 22 hm5C_associated_SNPs_65627 0 0 0 0 1 CD6 chr11:60785231 3'AG 60785231 Downstream 92bp
chr2 233527596 233527596 1 + G T BLCA 233527594 + 233527574 233527614 41 TGGGGGCCCCCCAGACCCACCTGGGCCTGAAGAGCATGATC TGGGGGCCCCCCAGACCCACCTTGGCCTGAAGAGCATGATC < 41bp 0.748957609974483 0.392943032698866 0.5173594 0.12292224 prediction 0.497915219948966 Functional Loss - EFHD1 ENSG00000115468 CDS Human protein_coding chr2:233527594 chr2:233527596 synonymous SNV . 0 23 hm5C_associated_SNPs_65628 0 0 1 0 2 EFHD1 chr2:233527512 3'AG 233527512 Downstream 85bp
chr2 233527596 233527596 1 + G T BLCA 233527594 + 233527574 233527614 41 TGGGGGCCCCCCAGACCCACCTGGGCCTGAAGAGCATGATC TGGGGGCCCCCCAGACCCACCTTGGCCTGAAGAGCATGATC < 41bp 0.748957609974483 0.392943032698866 0.5173594 0.12292224 prediction 0.497915219948966 Functional Loss - EFHD1 ENSG00000115468 CDS Human protein_coding chr2:233527594 chr2:233527596 synonymous SNV . 0 23 hm5C_associated_SNPs_65628 0 0 1 0 2 EFHD1 chr2:233527659 5'GT 233527659 Upstream 64bp
chr3 119445024 119445024 1 + G C LUAD 119445020 + 119445000 119445040 41 TGCTGCTTTATCCTGCAGGTCGGGGTCTCCCAGCAGGACAA TGCTGCTTTATCCTGCAGGTCGGGCTCTCCCAGCAGGACAA < 41bp 0.829051774150297 0.580112115613099 0.8994293 0.7920425 prediction 0.497879317074396 Functional Loss - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119445020 chr3:119445024 nonsynonymous SNV 0.906 4 25 hm5C_associated_SNPs_65631 0 0 0 0 1 MAATS1 chr3:119445018 3'AG 119445018 Downstream 7bp
chr22 21380721 21380721 1 + A C UCEC 21380717 + 21380697 21380737 41 CCTCATCTGCAGGCCAAGGCCCCGAAAGCAACCGCCAACTC CCTCATCTGCAGGCCAAGGCCCCGCAAGCAACCGCCAACTC < 41bp 0.748936469578807 0.345337262774927 0.098256975 0.11447635 prediction 0.497872939157614 Functional Loss - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21380717 chr22:21380721 nonsynonymous SNV 0.679 3 25 hm5C_associated_SNPs_65632 0 0 0 0 1 P2RX6 chr22:21380709 3'AG 21380709 Downstream 13bp
chr22 21380719 21380719 1 + C T UCEC 21380717 + 21380697 21380737 41 CCTCATCTGCAGGCCAAGGCCCCGAAAGCAACCGCCAACTC CCTCATCTGCAGGCCAAGGCCCTGAAAGCAACCGCCAACTC < 41bp 0.748936469578807 0.498538420008596 0.098256975 0.11393422 prediction 0.497872939157614 Functional Loss - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21380717 chr22:21380719 nonsynonymous SNV 0.834 3 23 hm5C_associated_SNPs_65633 0 0 0 0 1 P2RX6 chr22:21380709 3'AG 21380709 Downstream 11bp
chr1 179063289 179063289 1 + C T BLCA 179063287 + 179063267 179063307 41 GTTGCTCAAGGCTGGATGGTCCCGGGAAGAAATTACGATGG GTTGCTCAAGGCTGGATGGTCCTGGGAAGAAATTACGATGG < 41bp 0.790186883585944 0.541252174779805 0.43342146 0.4903397 prediction 0.497869417612277 Functional Loss - TOR3A ENSG00000186283 CDS Human protein_coding chr1:179063287 chr1:179063289 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_65634 0 0 1 0 2 TOR3A chr1:179063228 3'AG 179063228 Downstream 62bp
chr1 179063289 179063289 1 + C T BLCA 179063287 + 179063267 179063307 41 GTTGCTCAAGGCTGGATGGTCCCGGGAAGAAATTACGATGG GTTGCTCAAGGCTGGATGGTCCTGGGAAGAAATTACGATGG < 41bp 0.790186883585944 0.541252174779805 0.43342146 0.4903397 prediction 0.497869417612277 Functional Loss - TOR3A ENSG00000186283 CDS Human protein_coding chr1:179063287 chr1:179063289 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_65634 0 0 1 0 2 TOR3A chr1:179063352 5'GT 179063352 Upstream 64bp
chr15 91496242 91496242 1 + C T rs8041035 91496240 + 91496220 91496260 41 GAGATGATCCGCCGGGCAGCCACGGAGTGCATGTGTAACTT GAGATGATCCGCCGGGCAGCCATGGAGTGCATGTGTAACTT < 41bp 0.748930499201917 0.475669123118288 0.35946837 0.28753126 prediction 0.497860998403833 Functional Loss - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91496240 chr15:91496242 nonsynonymous SNV 0.946 4 23 hm5C_associated_SNPs_65636 0 0 1 0 2 UNC45A chr15:91496159 3'AG 91496159 Downstream 84bp
chr15 91496242 91496242 1 + C T rs8041035 91496240 + 91496220 91496260 41 GAGATGATCCGCCGGGCAGCCACGGAGTGCATGTGTAACTT GAGATGATCCGCCGGGCAGCCATGGAGTGCATGTGTAACTT < 41bp 0.748930499201917 0.475669123118288 0.35946837 0.28753126 prediction 0.497860998403833 Functional Loss - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91496240 chr15:91496242 nonsynonymous SNV 0.946 4 23 hm5C_associated_SNPs_65636 0 0 1 0 2 UNC45A chr15:91496276 5'GT 91496276 Upstream 35bp
chr17 61908549 61908549 1 + A C STAD 61908545 + 61908525 61908565 41 AGCGCACGATGCTGGAGTTGCTCAACCAGCTCGACGGCTTT AGCGCACGATGCTGGAGTTGCTCACCCAGCTCGACGGCTTT < 41bp 0.748929734081438 0.315911897160713 0.61079943 0.08101624 prediction 0.497859468162877 Functional Loss - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61908545 chr17:61908549 nonsynonymous SNV 0.997 5 25 hm5C_associated_SNPs_65637 0 0 1 0 1 PSMC5 chr17:61908586 5'GT 61908586 Upstream 38bp
chr4 154523484 154523484 1 + G T UCEC 154523482 + 154523462 154523502 41 CCAAACACATCCCGCGATATCAGCATTGTGTAAGCATTGGG CCAAACACATCCCGCGATATCATCATTGTGTAAGCATTGGG < 41bp 0.748924592663818 0.429003570857107 0.19032648 0.059494793 prediction 0.497849185327635 Functional Loss - TMEM131L ENSG00000121210 CDS Human protein_coding chr4:154523482 chr4:154523484 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_65638 0 0 0 0 1 TMEM131L chr4:154523490 5'GT 154523490 Upstream 7bp
chr2 103040785 103040785 1 + G T UCEC 103040782 + 103040762 103040802 41 AGTATTCCGCATCACATAAGCAAGACCTACTTCTTGGGAGC AGTATTCCGCATCACATAAGCAATACCTACTTCTTGGGAGC < 41bp 0.748924047403787 0.368671936939206 0.4081694 0.07523155 prediction 0.497848094807574 Functional Loss - IL18RAP ENSG00000115607 CDS Human protein_coding chr2:103040782 chr2:103040785 nonsynonymous SNV 0.029 0 24 hm5C_associated_SNPs_65639 0 0 0 0 2 IL18RAP chr2:103040691 3'AG 103040691 Downstream 95bp
chr2 103040785 103040785 1 + G T UCEC 103040782 + 103040762 103040802 41 AGTATTCCGCATCACATAAGCAAGACCTACTTCTTGGGAGC AGTATTCCGCATCACATAAGCAATACCTACTTCTTGGGAGC < 41bp 0.748924047403787 0.368671936939206 0.4081694 0.07523155 prediction 0.497848094807574 Functional Loss - IL18RAP ENSG00000115607 CDS Human protein_coding chr2:103040782 chr2:103040785 nonsynonymous SNV 0.029 0 24 hm5C_associated_SNPs_65639 0 0 0 0 2 IL18RAP chr2:103040874 5'GT 103040874 Upstream 90bp
chr17 79079945 79079945 1 + A T ESCA 79079941 + 79079921 79079961 41 GATGGCAGTGACAGGCTGCACATGAGGTGAGCTCTGGGCCC GATGGCAGTGACAGGCTGCACATGTGGTGAGCTCTGGGCCC < 41bp 0.841471473170163 0.592547572429494 0.7023301 0.47085395 prediction 0.497847801481339 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79079941 chr17:79079945 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_65640 0 0 1 0 2 BAIAP2 chr17:79079878 3'AG 79079878 Downstream 68bp
chr17 79079945 79079945 1 + A T ESCA 79079941 + 79079921 79079961 41 GATGGCAGTGACAGGCTGCACATGAGGTGAGCTCTGGGCCC GATGGCAGTGACAGGCTGCACATGTGGTGAGCTCTGGGCCC < 41bp 0.841471473170163 0.592547572429494 0.7023301 0.47085395 prediction 0.497847801481339 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79079941 chr17:79079945 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_65640 0 0 1 0 2 BAIAP2 chr17:79079946 5'GT 79079946 Upstream 2bp
chr10 60029056 60029056 1 + G T SARC 60029054 + 60029034 60029074 41 ATGAGTCTGACTTCCAGTTCCAGCGTACGAGGTGAAGTGGG ATGAGTCTGACTTCCAGTTCCATCGTACGAGGTGAAGTGGG < 41bp 0.876422355743662 0.627498639202009 0.51580215 0.099702805 prediction 0.497847433083305 Functional Loss - CISD1 ENSG00000122873 CDS Human protein_coding chr10:60029054 chr10:60029056 nonsynonymous SNV 0.521 0 23 hm5C_associated_SNPs_65641 0 0 1 0 1 CISD1 chr10:60029064 5'GT 60029064 Upstream 9bp
chr17 78079630 78079630 1 + G T SARC 78079628 + 78079608 78079648 41 CGGGCACCGTCCCCACTCTACAGCGTGGAGTTCTCCGAGGA CGGGCACCGTCCCCACTCTACATCGTGGAGTTCTCCGAGGA < 41bp 0.74891125432659 0.395066020410636 0.15756005 0.08369514 prediction 0.497822508653179 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78079628 chr17:78079630 nonsynonymous SNV 0.951 1 23 hm5C_associated_SNPs_65642 0 0 1 0 2 GAA chr17:78079548 3'AG 78079548 Downstream 83bp
chr17 78079630 78079630 1 + G T SARC 78079628 + 78079608 78079648 41 CGGGCACCGTCCCCACTCTACAGCGTGGAGTTCTCCGAGGA CGGGCACCGTCCCCACTCTACATCGTGGAGTTCTCCGAGGA < 41bp 0.74891125432659 0.395066020410636 0.15756005 0.08369514 prediction 0.497822508653179 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78079628 chr17:78079630 nonsynonymous SNV 0.951 1 23 hm5C_associated_SNPs_65642 0 0 1 0 2 GAA chr17:78079693 5'GT 78079693 Upstream 64bp
chr1 46976223 46976223 1 + A T LUAD 46976219 + 46976199 46976239 41 GCCGCACAGCGTTCACGGCTCAGCAGCTCGAGGCCCTGGAA GCCGCACAGCGTTCACGGCTCAGCTGCTCGAGGCCCTGGAA < 41bp 0.87392046437946 0.625009243662954 0.15805244 0.11775884 prediction 0.497822441433012 Functional Loss - DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46976219 chr1:46976223 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_65643 0 0 0 0 1 DMBX1 chr1:46976148 3'AG 46976148 Downstream 76bp
chr17 7344857 7344857 1 + C T UCEC 7344855 + 7344835 7344875 41 GTTTCTACCTCCAGGCGAATCCCGACGGAAGCATCCAGGGC GTTTCTACCTCCAGGCGAATCCTGACGGAAGCATCCAGGGC < 41bp 0.810834658572258 0.561924177558902 0.7756232 0.39646834 prediction 0.497820962026711 Functional Loss - FGF11 ENSG00000161958 CDS Human processed_transcript chr17:7344855 chr17:7344857 synonymous SNV . 0 23 hm5C_associated_SNPs_65644 0 0 0 1 3 FGF11 chr17:7344770 3'AG 7344770 Downstream 88bp
chr17 7344857 7344857 1 + C T UCEC 7344855 + 7344835 7344875 41 GTTTCTACCTCCAGGCGAATCCCGACGGAAGCATCCAGGGC GTTTCTACCTCCAGGCGAATCCTGACGGAAGCATCCAGGGC < 41bp 0.810834658572258 0.561924177558902 0.7756232 0.39646834 prediction 0.497820962026711 Functional Loss - FGF11 ENSG00000161958 CDS Human protein_coding chr17:7344855 chr17:7344857 synonymous SNV . 0 23 hm5C_associated_SNPs_65644 0 0 0 1 3 FGF11 chr17:7344790 3'AG 7344790 Downstream 68bp
chr17 7344857 7344857 1 + C T UCEC 7344855 + 7344835 7344875 41 GTTTCTACCTCCAGGCGAATCCCGACGGAAGCATCCAGGGC GTTTCTACCTCCAGGCGAATCCTGACGGAAGCATCCAGGGC < 41bp 0.810834658572258 0.561924177558902 0.7756232 0.39646834 prediction 0.497820962026711 Functional Loss - FGF11 ENSG00000161958 CDS Human protein_coding chr17:7344855 chr17:7344857 synonymous SNV . 0 23 hm5C_associated_SNPs_65644 0 0 0 1 3 FGF11 chr17:7344900 5'GT 7344900 Upstream 44bp
chr1 158913619 158913619 1 + G T BRCA 158913616 + 158913596 158913636 41 AGACGACAATCTATGAAATTCAGGATAAAACAGGAAGTATG AGACGACAATCTATGAAATTCAGTATAAAACAGGAAGTATG < 41bp 0.748900948915703 0.379154750823334 0.7319839 0.18651512 prediction 0.497801897831407 Functional Loss - PYHIN1 ENSG00000163564 CDS Human protein_coding chr1:158913616 chr1:158913619 nonsynonymous SNV 0.004 3 24 hm5C_associated_SNPs_65646 0 0 0 0 1 PYHIN1 chr1:158913580 3'AG 158913580 Downstream 40bp
chrX 153172036 153172036 1 + A T MESO 153172032 + 153172012 153172052 41 CTCAACAGCTGCACCAACCCCTGGATCTATGCATCTTTCAG CTCAACAGCTGCACCAACCCCTGGTTCTATGCATCTTTCAG < 41bp 0.867830597126953 0.618935888318386 0.41398424 0.21750799 prediction 0.497789417617133 Functional Loss - AVPR2 ENSG00000126895 CDS Human protein_coding chrX:153172032 chrX:153172036 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_65649 0 0 0 5 1 AVPR2 chrX:153171977 3'AG 153171977 Downstream 60bp
chr17 32647842 32647842 1 + G T UCEC 32647839 + 32647819 32647859 41 AGCTTCAAGACCAAACGGGGCAAGGAGGTCTGTGCTGACCC AGCTTCAAGACCAAACGGGGCAATGAGGTCTGTGCTGACCC < 41bp 0.748889549228999 0.356829629413162 0.3000769 0.21758461 prediction 0.497779098457999 Functional Loss - CCL8 ENSG00000108700 CDS Human protein_coding chr17:32647839 chr17:32647842 nonsynonymous SNV 0.164 0 24 hm5C_associated_SNPs_65650 0 0 0 0 1 CCL8 chr17:32647821 3'AG 32647821 Downstream 22bp
chr19 39873916 39873916 1 + G T UCEC 39873914 + 39873894 39873934 41 GTCTCTGTGTCTGAGCATGACAGAACACGCCTTGGGTGGTG GTCTCTGTGTCTGAGCATGACATAACACGCCTTGGGTGGTG < 41bp 0.748876126311591 0.415673077318399 0.28753662 0.0859223 prediction 0.497752252623182 Functional Loss - SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39873914 chr19:39873916 stopgain 1.000 1 23 hm5C_associated_SNPs_65654 0 0 1 0 2 SAMD4B chr19:39873848 3'AG 39873848 Downstream 69bp
chr19 39873916 39873916 1 + G T UCEC 39873914 + 39873894 39873934 41 GTCTCTGTGTCTGAGCATGACAGAACACGCCTTGGGTGGTG GTCTCTGTGTCTGAGCATGACATAACACGCCTTGGGTGGTG < 41bp 0.748876126311591 0.415673077318399 0.28753662 0.0859223 prediction 0.497752252623182 Functional Loss - SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39873914 chr19:39873916 stopgain 1.000 1 23 hm5C_associated_SNPs_65654 0 0 1 0 2 SAMD4B chr19:39873931 5'GT 39873931 Upstream 16bp
chr1 211533333 211533333 1 + T C UCEC 211533332 + 211533312 211533352 41 AGCCAGTCCTACGGAAAGACCTGAAAGAGCATTTGAGTGCA AGCCAGTCCTACGGAAAGACCCGAAAGAGCATTTGAGTGCA < 41bp 0.758867113259916 0.509998749497794 0.21771091 0.104350895 prediction 0.497736727524244 Functional Loss - TRAF5 ENSG00000082512 CDS Human protein_coding chr1:211533332 chr1:211533333 nonsynonymous SNV 0.901 2 22 hm5C_associated_SNPs_65657 0 0 0 0 2 TRAF5 chr1:211533254 3'AG 211533254 Downstream 80bp
chr1 211533333 211533333 1 + T C UCEC 211533332 + 211533312 211533352 41 AGCCAGTCCTACGGAAAGACCTGAAAGAGCATTTGAGTGCA AGCCAGTCCTACGGAAAGACCCGAAAGAGCATTTGAGTGCA < 41bp 0.758867113259916 0.509998749497794 0.21771091 0.104350895 prediction 0.497736727524244 Functional Loss - TRAF5 ENSG00000082512 CDS Human protein_coding chr1:211533332 chr1:211533333 nonsynonymous SNV 0.901 2 22 hm5C_associated_SNPs_65657 0 0 0 0 2 TRAF5 chr1:211533418 5'GT 211533418 Upstream 86bp
chr12 48172892 48172892 1 + G T SARC 48172890 + 48172870 48172910 41 ACCTGGCTCAAGGGGCTGCGCGGCTTCTTCTTCGTGGGCGT ACCTGGCTCAAGGGGCTGCGCGTCTTCTTCTTCGTGGGCGT < 41bp 0.74886191465498 0.397086820250157 0.11180714 0.03917533 prediction 0.49772382930996 Functional Loss - SLC48A1 ENSG00000211584 CDS Human protein_coding chr12:48172890 chr12:48172892 nonsynonymous SNV 0.990 0 23 hm5C_associated_SNPs_65658 0 0 1 0 1 SLC48A1 chr12:48172811 3'AG 48172811 Downstream 82bp
chr8 27646479 27646479 1 + A T ACC 27646475 + 27646455 27646495 41 TACAGCATCACCACAGGTTTCTGGAAGGAATCAAATATGTG TACAGCATCACCACAGGTTTCTGGTAGGAATCAAATATGTG < 41bp 0.748859237365364 0.412385472904263 0.1644361 0.08758685 prediction 0.497718474730728 Functional Loss - ESCO2 ENSG00000171320 CDS Human protein_coding chr8:27646475 chr8:27646479 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_65659 0 0 1 0 1 ESCO2 chr8:27646495 5'GT 27646495 Upstream 17bp
chr3 112998237 112998237 1 + G T UCEC 112998235 + 112998215 112998255 41 AAGCTAAAGAAAGTGGGAGACTGGATTCTGGCCACCAGCGC AAGCTAAAGAAAGTGGGAGACTTGATTCTGGCCACCAGCGC < 41bp 0.884326887909303 0.63548302054818 0.8644407 0.87108254 prediction 0.497687734722246 Functional Loss - BOC ENSG00000144857 CDS Human protein_coding chr3:112998235 chr3:112998237 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_65662 0 0 0 0 1 BOC chr3:112998302 5'GT 112998302 Upstream 66bp
chr3 38357847 38357847 1 + C T SARC 38357845 + 38357825 38357865 41 CTGGGGCTGGTGTCTCTGGCCTCGGTGGCTGGAGCCATCTT CTGGGGCTGGTGTCTCTGGCCTTGGTGGCTGGAGCCATCTT < 41bp 0.802664078107899 0.553827860281139 0.050664723 0.03881952 prediction 0.497672435653521 Functional Loss - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38357845 chr3:38357847 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_65665 0 0 0 0 1 SLC22A14 chr3:38357815 3'AG 38357815 Downstream 33bp
chr19 4251073 4251073 1 + C T UCEC 4251071 + 4251051 4251091 41 CAAGGGGAAGAAATTCAATGCTCGGAAGGAGACGGTGCAGA CAAGGGGAAGAAATTCAATGCTTGGAAGGAGACGGTGCAGA < 41bp 0.748833473999807 0.485568026489476 0.42886016 0.43966943 prediction 0.497666947999615 Functional Loss - CCDC94 ENSG00000105248 CDS Human protein_coding chr19:4251071 chr19:4251073 nonsynonymous SNV 0.407 4 23 hm5C_associated_SNPs_65667 0 0 1 0 2 CCDC94 chr19:4251024 3'AG 4251024 Downstream 50bp
chr19 4251073 4251073 1 + C T UCEC 4251071 + 4251051 4251091 41 CAAGGGGAAGAAATTCAATGCTCGGAAGGAGACGGTGCAGA CAAGGGGAAGAAATTCAATGCTTGGAAGGAGACGGTGCAGA < 41bp 0.748833473999807 0.485568026489476 0.42886016 0.43966943 prediction 0.497666947999615 Functional Loss - CCDC94 ENSG00000105248 CDS Human protein_coding chr19:4251071 chr19:4251073 nonsynonymous SNV 0.407 4 23 hm5C_associated_SNPs_65667 0 0 1 0 2 CCDC94 chr19:4251168 5'GT 4251168 Upstream 96bp
chr12 132281732 132281732 1 + C T UCEC 132281730 + 132281710 132281750 41 TCTTGCCTTTCAGAAGTCCCCACGAGAAGAAGAAGAAGAGG TCTTGCCTTTCAGAAGTCCCCATGAGAAGAAGAAGAAGAGG < 41bp 0.767657443982315 0.518828463050836 0.27299434 0.12144184 prediction 0.497657961862958 Functional Loss - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132281730 chr12:132281732 synonymous SNV . 0 23 hm5C_associated_SNPs_65668 0 0 1 0 1 SFSWAP chr12:132281723 3'AG 132281723 Downstream 10bp
chr11 47256871 47256871 1 + G C BLCA 47256870 + 47256850 47256890 41 CTGACCACGGACCAGAAGAGCGAGATCCGAGTTTACTCTGC CTGACCACGGACCAGAAGAGCCAGATCCGAGTTTACTCTGC < 41bp 0.748811510038671 0.471399216780277 0.8864377 0.66839415 prediction 0.497623020077343 Functional Loss - DDB2 ENSG00000134574 CDS Human protein_coding chr11:47256870 chr11:47256871 nonsynonymous SNV 0.991 3 22 hm5C_associated_SNPs_65672 0 0 1 0 2 DDB2 chr11:47256821 3'AG 47256821 Downstream 51bp
chr11 47256871 47256871 1 + G C BLCA 47256870 + 47256850 47256890 41 CTGACCACGGACCAGAAGAGCGAGATCCGAGTTTACTCTGC CTGACCACGGACCAGAAGAGCCAGATCCGAGTTTACTCTGC < 41bp 0.748811510038671 0.471399216780277 0.8864377 0.66839415 prediction 0.497623020077343 Functional Loss - DDB2 ENSG00000134574 CDS Human protein_coding chr11:47256870 chr11:47256871 nonsynonymous SNV 0.991 3 22 hm5C_associated_SNPs_65672 0 0 1 0 2 DDB2 chr11:47256963 5'GT 47256963 Upstream 93bp
chrX 47040923 47040923 1 + G T LUAD 47040920 + 47040900 47040940 41 TTACAGGTCCCGAGGCCTCCCTAGAGCCTGGGGCCGACTCT TTACAGGTCCCGAGGCCTCCCTATAGCCTGGGGCCGACTCT < 41bp 0.915504997003207 0.666698351970663 0.033309817 0.020144552 prediction 0.497613290065088 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47040920 chrX:47040923 stopgain 0.988 0 24 hm5C_associated_SNPs_65673 0 0 1 0 1 RBM10 chrX:47040906 3'AG 47040906 Downstream 18bp
chr16 20429554 20429554 1 + G T LUSC 20429552 + 20429532 20429572 41 TGCTGGTACTCCCACGGCTCCCGGAGTGGTGGCTGGTCAGT TGCTGGTACTCCCACGGCTCCCTGAGTGGTGGCTGGTCAGT < 41bp 0.748805045760304 0.393652962743663 0.8538052 0.06606251 prediction 0.497610091520609 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20429552 chr16:20429554 synonymous SNV . 0 23 hm5C_associated_SNPs_65674 0 0 0 0 1 ACSM5 chr16:20429591 5'GT 20429591 Upstream 38bp
chr9 139887630 139887630 1 + C T SKCM 139887628 + 139887608 139887648 41 GTACCAGGCCCAGAGGCAGCCCCCAGGCTGCGGGCGCTGAC GTACCAGGCCCAGAGGCAGCCCTCAGGCTGCGGGCGCTGAC < 41bp 0.79512441377039 0.54633217239293 0.43333375 0.2157278 prediction 0.49758448275492 Functional Loss - C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887628 chr9:139887630 nonsynonymous SNV 0.594 0 23 hm5C_associated_SNPs_65677 0 0 1 0 1 C9orf142 chr9:139887695 5'GT 139887695 Upstream 66bp
chr3 9969872 9969872 1 + C T SKCM 9969870 + 9969850 9969890 41 GTGTGGCCTCTGGAACCTGACTCCGTTAGGACGAACATCTG GTGTGGCCTCTGGAACCTGACTTCGTTAGGACGAACATCTG < 41bp 0.748789283887733 0.491045310939074 0.18113539 0.06257188 prediction 0.497578567775467 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9969870 chr3:9969872 nonsynonymous SNV 0.070 3 23 hm5C_associated_SNPs_65678 0 0 1 2 1 IL17RC chr3:9969850 3'AG 9969850 Downstream 23bp
chr12 3000150 3000150 1 + G C BLCA 3000146 + 3000126 3000166 41 CGCTGCCGGCTCAGTCCCAGCGGCGACAGGTCAGACAGGGC CGCTGCCGGCTCAGTCCCAGCGGCCACAGGTCAGACAGGGC < 41bp 0.74878336121285 0.457474833999883 0.4077593 0.28735307 prediction 0.4975667224257 Functional Loss - TULP3 ENSG00000078246 CDS Human protein_coding chr12:3000146 chr12:3000150 nonsynonymous SNV 0.959 3 25 hm5C_associated_SNPs_65679 0 0 1 1 1 TULP3 chr12:3000154 5'GT 3000154 Upstream 5bp
chr4 5795409 5795409 1 + C T UCEC 5795407 + 5795387 5795427 41 AGGACCACGAGGGCACCATCCGCGGCGTCTTGGGCCGACTG AGGACCACGAGGGCACCATCCGTGGCGTCTTGGGCCGACTG < 41bp 0.749637240480582 0.500862540275297 0.91891026 0.8635888 prediction 0.497549400410571 Functional Loss - EVC ENSG00000072840 CDS Human protein_coding chr4:5795407 chr4:5795409 synonymous SNV . 0 23 hm5C_associated_SNPs_65684 0 0 0 0 1 EVC chr4:5795335 3'AG 5795335 Downstream 75bp
chr1 171763591 171763591 1 + G T OV 171763589 + 171763569 171763609 41 TTGACAGTAAGGACCCAACACTGGGAATGAGTTGTCCGCCC TTGACAGTAAGGACCCAACACTTGGAATGAGTTGTCCGCCC < 41bp 0.877187686164085 0.628416634043617 0.084429085 0.020331383 prediction 0.497542104240936 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171763589 chr1:171763591 synonymous SNV . 0 23 hm5C_associated_SNPs_65685 0 0 1 0 2 METTL13 chr1:171763536 3'AG 171763536 Downstream 56bp
chr1 171763591 171763591 1 + G T OV 171763589 + 171763569 171763609 41 TTGACAGTAAGGACCCAACACTGGGAATGAGTTGTCCGCCC TTGACAGTAAGGACCCAACACTTGGAATGAGTTGTCCGCCC < 41bp 0.877187686164085 0.628416634043617 0.084429085 0.020331383 prediction 0.497542104240936 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171763589 chr1:171763591 synonymous SNV . 0 23 hm5C_associated_SNPs_65685 0 0 1 0 2 METTL13 chr1:171763667 5'GT 171763667 Upstream 77bp
chr8 73958220 73958220 1 + A T HNSC 73958216 + 73958196 73958236 41 GCATGGCTTTGGGAAGAAGACAAGAATTTGAGATCTGGCGT GCATGGCTTTGGGAAGAAGACAAGTATTTGAGATCTGGCGT < 41bp 0.845814215408485 0.597045263304708 0.08849394 0.0926851 prediction 0.497537904207554 Functional Loss - TERF1 ENSG00000147601 CDS Human protein_coding chr8:73958216 chr8:73958220 nonsynonymous SNV 0.983 2 25 hm5C_associated_SNPs_65686 0 0 0 0 1 TERF1 chr8:73958196 3'AG 73958196 Downstream 25bp
chr6 50683294 50683294 1 + G T LUAD 50683291 + 50683271 50683311 41 GACTCCTGCCAGGGCCCAGCCTGGGGCTGGCCGCCGCGGGA GACTCCTGCCAGGGCCCAGCCTGTGGCTGGCCGCCGCGGGA < 41bp 0.918300285173683 0.669535615747981 0.87712014 0.31731334 prediction 0.497529338851406 Functional Loss - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50683291 chr6:50683294 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_65687 0 0 0 0 1 TFAP2D chr6:50683326 5'GT 50683326 Upstream 33bp
chr9 101594134 101594134 1 + C T SKCM 101594132 + 101594112 101594152 41 ACCTTCGAATACCTGGGGAACTCCGGGGAGCCCCAGATCGG ACCTTCGAATACCTGGGGAACTTCGGGGAGCCCCAGATCGG < 41bp 0.80480027412723 0.556036181503585 0.34657913 0.5778092 prediction 0.497528185247291 Functional Loss - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101594132 chr9:101594134 nonsynonymous SNV 0.057 1 23 hm5C_associated_SNPs_65688 0 0 1 0 1 GALNT12 chr9:101594054 3'AG 101594054 Downstream 81bp
chr12 49950253 49950253 1 + G T UCEC 49950251 + 49950231 49950271 41 ATGTAGCAGCAGCCCCTCCCCTGGACCAGGTACCAGGGCCC ATGTAGCAGCAGCCCCTCCCCTTGACCAGGTACCAGGGCCC < 41bp 0.884409993881736 0.635646036990878 0.66813254 0.13732216 prediction 0.497527913781715 Functional Loss - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49950251 chr12:49950253 stopgain 0.877 0 23 hm5C_associated_SNPs_65690 0 0 0 0 1 KCNH3 chr12:49950259 5'GT 49950259 Upstream 7bp
chr19 7594019 7594019 1 + C T LIHC 7594017 + 7593997 7594037 41 GCTACGACGTCTGCAGCATCCTCCTGGGCACCTCGACGCTG GCTACGACGTCTGCAGCATCCTTCTGGGCACCTCGACGCTG < 41bp 0.818763808378678 0.570008762758451 0.066221505 0.04652196 prediction 0.497510091240455 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7594017 chr19:7594019 synonymous SNV . 0 23 hm5C_associated_SNPs_65693 0 0 0 0 2 MCOLN1 chr19:7593987 3'AG 7593987 Downstream 33bp
chr19 7594019 7594019 1 + C T LIHC 7594017 + 7593997 7594037 41 GCTACGACGTCTGCAGCATCCTCCTGGGCACCTCGACGCTG GCTACGACGTCTGCAGCATCCTTCTGGGCACCTCGACGCTG < 41bp 0.818763808378678 0.570008762758451 0.066221505 0.04652196 prediction 0.497510091240455 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7594017 chr19:7594019 synonymous SNV . 0 23 hm5C_associated_SNPs_65693 0 0 0 0 2 MCOLN1 chr19:7594088 5'GT 7594088 Upstream 70bp
chr17 80544015 80544015 1 + A T rs188729988 80544011 + 80543991 80544031 41 TGGACAAGCTGTGGTCACCCCGGCAGCCGTGCTGGCCCCTC TGGACAAGCTGTGGTCACCCCGGCTGCCGTGCTGGCCCCTC < 41bp 0.877793766894785 0.629041356144805 0.88688976 0.86106694 prediction 0.49750482149996 Functional Loss - FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80544011 chr17:80544015 synonymous SNV . 0 25 hm5C_associated_SNPs_65694 0 0 1 0 1 FOXK2 chr17:80544076 5'GT 80544076 Upstream 62bp
chr2 187370550 187370550 1 + G T UCEC 187370547 + 187370527 187370567 41 GCAGATGATACCCGCTACACCCAGGGAACAGGTGGTGATGA GCAGATGATACCCGCTACACCCATGGAACAGGTGGTGATGA < 41bp 0.748749329834007 0.355032219148342 0.8892602 0.22873133 prediction 0.497498659668015 Functional Loss - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187370547 chr2:187370550 nonsynonymous SNV 0.985 0 24 hm5C_associated_SNPs_65695 0 0 1 0 2 ZC3H15 chr2:187370467 3'AG 187370467 Downstream 84bp
chr2 187370550 187370550 1 + G T UCEC 187370547 + 187370527 187370567 41 GCAGATGATACCCGCTACACCCAGGGAACAGGTGGTGATGA GCAGATGATACCCGCTACACCCATGGAACAGGTGGTGATGA < 41bp 0.748749329834007 0.355032219148342 0.8892602 0.22873133 prediction 0.497498659668015 Functional Loss - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187370547 chr2:187370550 nonsynonymous SNV 0.985 0 24 hm5C_associated_SNPs_65695 0 0 1 0 2 ZC3H15 chr2:187370568 5'GT 187370568 Upstream 19bp
chr3 157841731 157841731 1 + G T LUAD 157841728 + 157841708 157841748 41 GTCGAAGTCGTTCAAGGGGTCGAGGGAAATCCTATAGAGTT GTCGAAGTCGTTCAAGGGGTCGATGGAAATCCTATAGAGTT < 41bp 0.748744691209989 0.390591230843677 0.8388019 0.13970348 prediction 0.497489382419978 Functional Loss - RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157841728 chr3:157841731 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_65698 0 0 1 0 2 RSRC1 chr3:157841655 3'AG 157841655 Downstream 77bp
chr3 157841731 157841731 1 + G T LUAD 157841728 + 157841708 157841748 41 GTCGAAGTCGTTCAAGGGGTCGAGGGAAATCCTATAGAGTT GTCGAAGTCGTTCAAGGGGTCGATGGAAATCCTATAGAGTT < 41bp 0.748744691209989 0.390591230843677 0.8388019 0.13970348 prediction 0.497489382419978 Functional Loss - RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157841728 chr3:157841731 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_65698 0 0 1 0 2 RSRC1 chr3:157841780 5'GT 157841780 Upstream 50bp
chr6 35378951 35378951 1 + C T BLCA 35378949 + 35378929 35378969 41 AGGCAGAAGGAGCCCCAGAGCTCAATGGGGGACCACAGCAT AGGCAGAAGGAGCCCCAGAGCTTAATGGGGGACCACAGCAT < 41bp 0.809402184052309 0.560660094549992 0.42738423 0.12524596 prediction 0.497484179004634 Functional Loss - PPARD ENSG00000112033 CDS Human protein_coding chr6:35378949 chr6:35378951 synonymous SNV . 0 23 hm5C_associated_SNPs_65700 0 0 1 0 1 PPARD chr6:35378994 5'GT 35378994 Upstream 44bp
chr7 65553865 65553865 1 + T C UCEC 65553864 + 65553844 65553884 41 GCCGAGGACCTCATCCTCTACTGCACCAAGGAATTCAGCTT GCCGAGGACCTCATCCTCTACCGCACCAAGGAATTCAGCTT < 41bp 0.748735389420945 0.489342570365338 0.13502702 0.13213971 prediction 0.49747077884189 Functional Loss - ASL ENSG00000126522;ENSG00000249319 CDS Human other chr7:65553864 chr7:65553865 nonsynonymous SNV 0.979 3 22 hm5C_associated_SNPs_65702 0 0 1 0 2 ASL chr7:65553794 3'AG 65553794 Downstream 72bp
chr7 65553865 65553865 1 + T C UCEC 65553864 + 65553844 65553884 41 GCCGAGGACCTCATCCTCTACTGCACCAAGGAATTCAGCTT GCCGAGGACCTCATCCTCTACCGCACCAAGGAATTCAGCTT < 41bp 0.748735389420945 0.489342570365338 0.13502702 0.13213971 prediction 0.49747077884189 Functional Loss - ASL ENSG00000126522;ENSG00000249319 CDS Human other chr7:65553864 chr7:65553865 nonsynonymous SNV 0.979 3 22 hm5C_associated_SNPs_65702 0 0 1 0 2 ASL chr7:65553908 5'GT 65553908 Upstream 44bp
chr3 25611395 25611395 1 + G T LUSC 25611392 + 25611372 25611412 41 CTTTCCCTTCACTCTGCCAGCTGGGTAAATACACCACGGTA CTTTCCCTTCACTCTGCCAGCTGTGTAAATACACCACGGTA < 41bp 0.74873339764802 0.364162350577328 0.7665286 0.23154226 prediction 0.49746679529604 Functional Loss - RARB ENSG00000077092 CDS Human protein_coding chr3:25611392 chr3:25611395 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_65703 0 0 1 0 1 RARB chr3:25611409 5'GT 25611409 Upstream 15bp
chr19 12781095 12781095 1 + C T UCEC 12781093 + 12781073 12781113 41 GTGCGCAAATTCCGGGGCCACGCAGGGGTGAGTGAAAGCCT GTGCGCAAATTCCGGGGCCACGTAGGGGTGAGTGAAAGCCT < 41bp 0.748727850337466 0.484761533938632 0.12610966 0.24796715 prediction 0.497455700674932 Functional Loss - WDR83 ENSG00000123154 CDS Human protein_coding chr19:12781093 chr19:12781095 nonsynonymous SNV 0.987 0 23 hm5C_associated_SNPs_65705 0 0 1 0 1 WDR83 chr19:12781099 5'GT 12781099 Upstream 5bp
chr14 67787027 67787027 1 + T C KIRP 67787026 + 67787006 67787046 41 AATAGGAAGAGACCTATCATCTTGATTGGTCCACAGAACTG AATAGGAAGAGACCTATCATCCTGATTGGTCCACAGAACTG < 41bp 0.764302792513494 0.515589905443692 0.2388207 0.1541872 prediction 0.497425774139603 Functional Loss - MPP5 ENSG00000072415 CDS Human protein_coding chr14:67787026 chr14:67787027 synonymous SNV . 0 22 hm5C_associated_SNPs_65708 0 0 1 0 2 MPP5 chr14:67786947 3'AG 67786947 Downstream 81bp
chr14 67787027 67787027 1 + T C KIRP 67787026 + 67787006 67787046 41 AATAGGAAGAGACCTATCATCTTGATTGGTCCACAGAACTG AATAGGAAGAGACCTATCATCCTGATTGGTCCACAGAACTG < 41bp 0.764302792513494 0.515589905443692 0.2388207 0.1541872 prediction 0.497425774139603 Functional Loss - MPP5 ENSG00000072415 CDS Human protein_coding chr14:67787026 chr14:67787027 synonymous SNV . 0 22 hm5C_associated_SNPs_65708 0 0 1 0 2 MPP5 chr14:67787114 5'GT 67787114 Upstream 88bp
chr7 2644557 2644557 1 + C T COAD 2644555 + 2644535 2644575 41 AGCTTTCAGGGGACATCTCACGCGGACAAAGCTCTTAGCAA AGCTTTCAGGGGACATCTCACGTGGACAAAGCTCTTAGCAA < 41bp 0.770631449404747 0.521925119904993 0.9379976 0.9349444 prediction 0.497412658999509 Functional Loss - IQCE ENSG00000106012 CDS Human protein_coding chr7:2644555 chr7:2644557 nonsynonymous SNV 0.003 3 23 hm5C_associated_SNPs_65710 0 0 0 0 2 IQCE chr7:2644515 3'AG 2644515 Downstream 43bp
chr7 2644557 2644557 1 + C T COAD 2644555 + 2644535 2644575 41 AGCTTTCAGGGGACATCTCACGCGGACAAAGCTCTTAGCAA AGCTTTCAGGGGACATCTCACGTGGACAAAGCTCTTAGCAA < 41bp 0.770631449404747 0.521925119904993 0.9379976 0.9349444 prediction 0.497412658999509 Functional Loss - IQCE ENSG00000106012 CDS Human protein_coding chr7:2644555 chr7:2644557 nonsynonymous SNV 0.003 3 23 hm5C_associated_SNPs_65710 0 0 0 0 2 IQCE chr7:2644625 5'GT 2644625 Upstream 69bp
chr19 37209913 37209913 1 + G T UCEC 37209910 + 37209890 37209930 41 GGAACACCAAGAGAAGTATTCTAGATCAGTTGTAAGCATCA GGAACACCAAGAGAAGTATTCTATATCAGTTGTAAGCATCA < 41bp 0.748700577057026 0.382398737942591 0.17080024 0.16637045 prediction 0.497401154114052 Functional Loss - ZNF567 ENSG00000189042 CDS Human protein_coding chr19:37209910 chr19:37209913 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_65712 0 0 1 0 1 ZNF567 chr19:37209850 3'AG 37209850 Downstream 64bp
chr19 15222530 15222530 1 + A T UCEC 15222526 + 15222506 15222546 41 TGGTACTGGAGGCCATGGCCCGGGACCCCCCAAACAGAGTT TGGTACTGGAGGCCATGGCCCGGGTCCCCCCAAACAGAGTT < 41bp 0.856177618316396 0.607480012241377 0.5028052 0.3061929 prediction 0.497395212150039 Functional Loss - SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15222526 chr19:15222530 nonsynonymous SNV 0.071 1 25 hm5C_associated_SNPs_65713 0 0 0 0 1 SYDE1 chr19:15222443 3'AG 15222443 Downstream 88bp
chr8 98900369 98900369 1 + G C rs35804177 98900365 + 98900345 98900385 41 CAGGCTGCTTTCTGCTGATCCTCGGACAGATCGTCCTCCTC CAGGCTGCTTTCTGCTGATCCTCGCACAGATCGTCCTCCTC < 41bp 0.748693655245261 0.438772190263542 0.36102602 0.16321349 prediction 0.497387310490522 Functional Loss - MATN2 ENSG00000132561 CDS Human protein_coding chr8:98900365 chr8:98900369 nonsynonymous SNV 0.322 3 25 hm5C_associated_SNPs_65715 0 0 0 0 1 MATN2 chr8:98900303 3'AG 98900303 Downstream 67bp
chr13 113813025 113813025 1 + C T PAAD 113813023 + 113813003 113813043 41 GCCTGGTCCTGGTCCTCGCCCTCCATCGTGTGGAGCCCTCA GCCTGGTCCTGGTCCTCGCCCTTCATCGTGTGGAGCCCTCA < 41bp 0.750547020951252 0.501856626194838 0.9486071 0.13624597 prediction 0.497380789512827 Functional Loss - PROZ ENSG00000126231 CDS Human protein_coding chr13:113813023 chr13:113813025 synonymous SNV . 0 23 hm5C_associated_SNPs_65716 0 0 1 0 1 PROZ chr13:113813044 5'GT 113813044 Upstream 20bp
chr19 18305832 18305832 1 + G C BLCA 18305831 + 18305811 18305851 41 TCTTCGTGCCCCCCCAATTTCGAGTCACCTACATCAACGGC TCTTCGTGCCCCCCCAATTTCCAGTCACCTACATCAACGGC < 41bp 0.748683824464132 0.429569593746527 0.07638621 0.008577734 prediction 0.497367648928264 Functional Loss - MPV17L2 ENSG00000254858 CDS Human protein_coding chr19:18305831 chr19:18305832 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_65718 0 0 1 0 2 MPV17L2 chr19:18305768 3'AG 18305768 Downstream 65bp
chr19 18305832 18305832 1 + G C BLCA 18305831 + 18305811 18305851 41 TCTTCGTGCCCCCCCAATTTCGAGTCACCTACATCAACGGC TCTTCGTGCCCCCCCAATTTCCAGTCACCTACATCAACGGC < 41bp 0.748683824464132 0.429569593746527 0.07638621 0.008577734 prediction 0.497367648928264 Functional Loss - MPV17L2 ENSG00000254858 CDS Human protein_coding chr19:18305831 chr19:18305832 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_65718 0 0 1 0 2 MPV17L2 chr19:18305896 5'GT 18305896 Upstream 65bp
chr5 78376548 78376548 1 + G T PAAD 78376545 + 78376525 78376565 41 GCTGCTGCCTGTGACCTCGCCAGGGAAGTGGCTGGCAAAGG GCTGCTGCCTGTGACCTCGCCAGTGAAGTGGCTGGCAAAGG < 41bp 0.748682840255208 0.343724825909979 0.92583233 0.6885706 prediction 0.497365680510416 Functional Loss - BHMT2 ENSG00000132840 CDS Human protein_coding chr5:78376545 chr5:78376548 nonsynonymous SNV 0.766 1 24 hm5C_associated_SNPs_65719 0 0 1 0 1 BHMT2 chr5:78376510 3'AG 78376510 Downstream 39bp
chrX 10096688 10096688 1 + C T STAD 10096686 + 10096666 10096706 41 GAGCGGGCCAAGCTGGAGTACACGGAGGAGGAGGTCCTGGA GAGCGGGCCAAGCTGGAGTACATGGAGGAGGAGGTCCTGGA < 41bp 0.795247174417309 0.546565591469038 0.74659276 0.8401885 prediction 0.497363165896541 Functional Loss - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10096686 chrX:10096688 nonsynonymous SNV 0.179 3 23 hm5C_associated_SNPs_65720 0 0 0 0 2 WWC3 chrX:10096597 3'AG 10096597 Downstream 92bp
chrX 10096688 10096688 1 + C T STAD 10096686 + 10096666 10096706 41 GAGCGGGCCAAGCTGGAGTACACGGAGGAGGAGGTCCTGGA GAGCGGGCCAAGCTGGAGTACATGGAGGAGGAGGTCCTGGA < 41bp 0.795247174417309 0.546565591469038 0.74659276 0.8401885 prediction 0.497363165896541 Functional Loss - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10096686 chrX:10096688 nonsynonymous SNV 0.179 3 23 hm5C_associated_SNPs_65720 0 0 0 0 2 WWC3 chrX:10096748 5'GT 10096748 Upstream 61bp
chr3 195954608 195954608 1 + C T BLCA 195954606 + 195954586 195954626 41 CTGGTGGAAATGACCATCACCTCGTGAGTGCCCTGCCTCGC CTGGTGGAAATGACCATCACCTTGTGAGTGCCCTGCCTCGC < 41bp 0.785558201537235 0.536879791823342 0.22612053 0.30574685 prediction 0.497356819427785 Functional Loss - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195954606 chr3:195954608 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_65722 0 0 0 0 2 SLC51A chr3:195954535 3'AG 195954535 Downstream 74bp
chr3 195954608 195954608 1 + C T BLCA 195954606 + 195954586 195954626 41 CTGGTGGAAATGACCATCACCTCGTGAGTGCCCTGCCTCGC CTGGTGGAAATGACCATCACCTTGTGAGTGCCCTGCCTCGC < 41bp 0.785558201537235 0.536879791823342 0.22612053 0.30574685 prediction 0.497356819427785 Functional Loss - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195954606 chr3:195954608 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_65722 0 0 0 0 2 SLC51A chr3:195954608 5'GT 195954608 Upstream 1bp
chr6 50718994 50718994 1 + C T HNSC 50718992 + 50718972 50719012 41 ACTGGGATCCTCCAGACCCACTCCAATTCTAGACCTTGACA ACTGGGATCCTCCAGACCCACTTCAATTCTAGACCTTGACA < 41bp 0.748671351820046 0.459732126558559 0.9567094 0.016076177 prediction 0.497342703640091 Functional Loss - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50718992 chr6:50718994 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_65723 0 0 0 0 2 TFAP2D chr6:50718924 3'AG 50718924 Downstream 71bp
chr6 50718994 50718994 1 + C T HNSC 50718992 + 50718972 50719012 41 ACTGGGATCCTCCAGACCCACTCCAATTCTAGACCTTGACA ACTGGGATCCTCCAGACCCACTTCAATTCTAGACCTTGACA < 41bp 0.748671351820046 0.459732126558559 0.9567094 0.016076177 prediction 0.497342703640091 Functional Loss - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50718992 chr6:50718994 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_65723 0 0 0 0 2 TFAP2D chr6:50719037 5'GT 50719037 Upstream 44bp
chr6 50718993 50718993 1 + T C OV 50718992 + 50718972 50719012 41 ACTGGGATCCTCCAGACCCACTCCAATTCTAGACCTTGACA ACTGGGATCCTCCAGACCCACCCCAATTCTAGACCTTGACA < 41bp 0.748671351820046 0.490096724916477 0.9567094 0.0037359893 prediction 0.497342703640091 Functional Loss - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50718992 chr6:50718993 synonymous SNV . 0 22 hm5C_associated_SNPs_65724 0 0 0 0 2 TFAP2D chr6:50718924 3'AG 50718924 Downstream 70bp
chr6 50718993 50718993 1 + T C OV 50718992 + 50718972 50719012 41 ACTGGGATCCTCCAGACCCACTCCAATTCTAGACCTTGACA ACTGGGATCCTCCAGACCCACCCCAATTCTAGACCTTGACA < 41bp 0.748671351820046 0.490096724916477 0.9567094 0.0037359893 prediction 0.497342703640091 Functional Loss - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50718992 chr6:50718993 synonymous SNV . 0 22 hm5C_associated_SNPs_65724 0 0 0 0 2 TFAP2D chr6:50719037 5'GT 50719037 Upstream 45bp
chr11 65823007 65823007 1 + A C LUAD 65823006 + 65822986 65823026 41 AACTTGTTTTCTTTTTTAAGCAGGGAGATCATTCGCTGAAG AACTTGTTTTCTTTTTTAAGCCGGGAGATCATTCGCTGAAG < 41bp 0.748670441372981 0.4895285985923 0.9021462 0.8863303 prediction 0.497340882745962 Functional Loss - SF3B2 ENSG00000087365;ENSG00000087365 exonic;splicing Human protein_coding chr11:65823006 chr11:65823007 nonsynonymous SNV 0.994 0 22 hm5C_associated_SNPs_65725 0 0 1 0 2 SF3B2 chr11:65823006 3'AG 65823006 Downstream 2bp
chr11 65823007 65823007 1 + A C LUAD 65823006 + 65822986 65823026 41 AACTTGTTTTCTTTTTTAAGCAGGGAGATCATTCGCTGAAG AACTTGTTTTCTTTTTTAAGCCGGGAGATCATTCGCTGAAG < 41bp 0.748670441372981 0.4895285985923 0.9021462 0.8863303 prediction 0.497340882745962 Functional Loss - SF3B2 ENSG00000087365;ENSG00000087365 exonic;splicing Human protein_coding chr11:65823006 chr11:65823007 nonsynonymous SNV 0.994 0 22 hm5C_associated_SNPs_65725 0 0 1 0 2 SF3B2 chr11:65823056 5'GT 65823056 Upstream 50bp
chr5 161318005 161318005 1 + C T LUAD 161318003 + 161317983 161318023 41 CATAATGACAGTGATTCTCTCACAAGTCTCCTTCTGGCTCA CATAATGACAGTGATTCTCTCATAAGTCTCCTTCTGGCTCA < 41bp 0.826694249691267 0.57802667184535 0.32467908 0.30873698 prediction 0.497335155691834 Functional Loss - GABRA1 ENSG00000022355 CDS Human protein_coding chr5:161318003 chr5:161318005 stopgain 0.987 1 23 hm5C_associated_SNPs_65726 0 0 0 0 1 GABRA1 chr5:161318056 5'GT 161318056 Upstream 52bp
chr16 54966495 54966495 1 + G T LUAD 54966493 + 54966473 54966513 41 CCCCTGGGATCGTACCCTTACGGGGACCCAGCGTACCGGAA CCCCTGGGATCGTACCCTTACGTGGACCCAGCGTACCGGAA < 41bp 0.897998277844777 0.649343764467751 0.9400749 0.80333424 prediction 0.497309026754052 Functional Loss - IRX5 ENSG00000176842 CDS Human protein_coding chr16:54966493 chr16:54966495 nonsynonymous SNV 0.924 4 23 hm5C_associated_SNPs_65732 0 0 0 0 1 IRX5 chr16:54966410 3'AG 54966410 Downstream 86bp
chrX 151818340 151818340 1 + C T UCEC 151818338 + 151818318 151818358 41 AGCAAGGAGGTGTATTTCTACACAGGTGGGTCTGACCCCTT AGCAAGGAGGTGTATTTCTACATAGGTGGGTCTGACCCCTT < 41bp 0.78461795754039 0.535966524184315 0.3136015 0.20776048 prediction 0.49730286671215 Functional Loss - GABRQ ENSG00000147402 CDS Human other chrX:151818338 chrX:151818340 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_65733 0 0 0 0 1 GABRQ chrX:151818342 5'GT 151818342 Upstream 3bp
chr19 57743478 57743478 1 + G T STAD 57743475 + 57743455 57743495 41 ATTTGGGAATGTGTACCTGGCTCGGCTCAAGGAAAGCCATT ATTTGGGAATGTGTACCTGGCTCTGCTCAAGGAAAGCCATT < 41bp 0.74863795079497 0.354800506942069 0.10832521 0.079170346 prediction 0.49727590158994 Functional Loss - AURKC ENSG00000105146 CDS Human protein_coding chr19:57743475 chr19:57743478 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_65736 0 0 0 0 1 AURKC chr19:57743401 3'AG 57743401 Downstream 78bp
chr19 37804176 37804176 1 + A T rs137862067 37804172 + 37804152 37804192 41 ACCACCACCAACCCACCTTTCACGAGAGGAGTCCTTGAGAA ACCACCACCAACCCACCTTTCACGTGAGGAGTCCTTGAGAA < 41bp 0.748633411176128 0.470281922371431 0.04404685 0.049069077 prediction 0.497266822352257 Functional Loss - LOC284412;HKR1 ENSG00000181666 UTR5 Human protein_coding chr19:37804172 chr19:37804176 . . 0 25 hm5C_associated_SNPs_65737 0 0 0 0 1 LOC284412;HKR1 chr19:37804214 5'GT 37804214 Upstream 39bp
chr5 175793474 175793474 1 + C T UCEC 175793472 + 175793452 175793492 41 CTGGATGGCGCAGGCAAGAGCACGTTCCTGCGCGTGTTGTC CTGGATGGCGCAGGCAAGAGCATGTTCCTGCGCGTGTTGTC < 41bp 0.786839244724096 0.538210149063278 0.44010687 0.43830603 prediction 0.497258191321634 Functional Loss - ARL10 ENSG00000175414 CDS Human protein_coding chr5:175793472 chr5:175793474 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_65738 0 0 1 0 1 ARL10 chr5:175793383 3'AG 175793383 Downstream 92bp
chr10 5937075 5937075 1 + G T KIRC 5937073 + 5937053 5937093 41 TGATAATGGGCTACATTGCGCAGGGCCCCTGGGCCATCTCC TGATAATGGGCTACATTGCGCATGGCCCCTGGGCCATCTCC < 41bp 0.748622023613418 0.383490899476719 0.90888983 0.15072036 prediction 0.497244047226837 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5937073 chr10:5937075 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_65739 0 0 0 0 2 FBXO18 chr10:5937019 3'AG 5937019 Downstream 57bp
chr10 5937075 5937075 1 + G T KIRC 5937073 + 5937053 5937093 41 TGATAATGGGCTACATTGCGCAGGGCCCCTGGGCCATCTCC TGATAATGGGCTACATTGCGCATGGCCCCTGGGCCATCTCC < 41bp 0.748622023613418 0.383490899476719 0.90888983 0.15072036 prediction 0.497244047226837 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5937073 chr10:5937075 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_65739 0 0 0 0 2 FBXO18 chr10:5937150 5'GT 5937150 Upstream 76bp
chr9 127101926 127101926 1 + G T LIHC 127101924 + 127101904 127101944 41 TCAAGTCCGACATCTGGTCCCTGGGCTGTCTGCTGTACGAG TCAAGTCCGACATCTGGTCCCTTGGCTGTCTGCTGTACGAG < 41bp 0.74861928156002 0.399791591822613 0.40210298 0.06193444 prediction 0.497238563120041 Functional Loss - NEK6 ENSG00000119408 CDS Human protein_coding chr9:127101924 chr9:127101926 synonymous SNV . 0 23 hm5C_associated_SNPs_65741 0 0 1 0 2 NEK6 chr9:127101850 3'AG 127101850 Downstream 77bp
chr9 127101926 127101926 1 + G T LIHC 127101924 + 127101904 127101944 41 TCAAGTCCGACATCTGGTCCCTGGGCTGTCTGCTGTACGAG TCAAGTCCGACATCTGGTCCCTTGGCTGTCTGCTGTACGAG < 41bp 0.74861928156002 0.399791591822613 0.40210298 0.06193444 prediction 0.497238563120041 Functional Loss - NEK6 ENSG00000119408 CDS Human protein_coding chr9:127101924 chr9:127101926 synonymous SNV . 0 23 hm5C_associated_SNPs_65741 0 0 1 0 2 NEK6 chr9:127101944 5'GT 127101944 Upstream 19bp
chr2 69204842 69204842 1 + A C STAD 69204838 + 69204818 69204858 41 CAGTGAGTGTCAACAATGAACACAATGTGGCCAATGTTGAC CAGTGAGTGTCAACAATGAACACACTGTGGCCAATGTTGAC < 41bp 0.748617391631348 0.329336207737462 0.014546275 0.012417495 prediction 0.497234783262696 Functional Loss - GKN1 ENSG00000169605 CDS Human protein_coding chr2:69204838 chr2:69204842 nonsynonymous SNV 0.979 1 25 hm5C_associated_SNPs_65743 0 0 0 0 2 GKN1 chr2:69204769 3'AG 69204769 Downstream 74bp
chr2 69204842 69204842 1 + A C STAD 69204838 + 69204818 69204858 41 CAGTGAGTGTCAACAATGAACACAATGTGGCCAATGTTGAC CAGTGAGTGTCAACAATGAACACACTGTGGCCAATGTTGAC < 41bp 0.748617391631348 0.329336207737462 0.014546275 0.012417495 prediction 0.497234783262696 Functional Loss - GKN1 ENSG00000169605 CDS Human protein_coding chr2:69204838 chr2:69204842 nonsynonymous SNV 0.979 1 25 hm5C_associated_SNPs_65743 0 0 0 0 2 GKN1 chr2:69204906 5'GT 69204906 Upstream 65bp
chr17 8222161 8222161 1 + C T UCEC 8222159 + 8222139 8222179 41 GGGGGGCGTGCTCTTTGCCTCGCGCCCCCGCTTCACCCCTC GGGGGGCGTGCTCTTTGCCTCGTGCCCCCGCTTCACCCCTC < 41bp 0.774115235193994 0.525498306514739 0.2309117 0.26042098 prediction 0.497233857358511 Functional Loss - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8222159 chr17:8222161 nonsynonymous SNV 0.070 4 23 hm5C_associated_SNPs_65744 0 0 0 0 2 ARHGEF15 chr17:8222068 3'AG 8222068 Downstream 94bp
chr17 8222161 8222161 1 + C T UCEC 8222159 + 8222139 8222179 41 GGGGGGCGTGCTCTTTGCCTCGCGCCCCCGCTTCACCCCTC GGGGGGCGTGCTCTTTGCCTCGTGCCCCCGCTTCACCCCTC < 41bp 0.774115235193994 0.525498306514739 0.2309117 0.26042098 prediction 0.497233857358511 Functional Loss - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8222159 chr17:8222161 nonsynonymous SNV 0.070 4 23 hm5C_associated_SNPs_65744 0 0 0 0 2 ARHGEF15 chr17:8222228 5'GT 8222228 Upstream 68bp
chr6 4087894 4087894 1 + G T LUSC 4087891 + 4087871 4087911 41 TTGAGATGCTGTCTAACCTCCACGAGCTGCTTCCGAATCAC TTGAGATGCTGTCTAACCTCCACTAGCTGCTTCCGAATCAC < 41bp 0.748614489490416 0.367379613965481 0.30845082 0.06552917 prediction 0.497228978980833 Functional Loss - C6orf201 ENSG00000185689 CDS Human protein_coding chr6:4087891 chr6:4087894 stopgain 0.291 0 24 hm5C_associated_SNPs_65745 0 0 0 0 1 C6orf201 chr6:4087960 5'GT 4087960 Upstream 67bp
chrX 1467404 1467404 1 + A C rs17879004 1467403 + 1467383 1467423 41 CACCGTCCGAGTGGCCAACCCACCATTCTCCACGTGGATCC CACCGTCCGAGTGGCCAACCCCCCATTCTCCACGTGGATCC < 41bp 0.761890135698526 0.513276800002784 0.063061506 0.070596844 prediction 0.497226671391484 Functional Loss - IL3RA ENSG00000185291 CDS Human protein_coding chrX:1467403 chrX:1467404 synonymous SNV . 0 22 hm5C_associated_SNPs_65746 0 0 0 0 2 IL3RA chrX:1467324 3'AG 1467324 Downstream 81bp
chrX 1467404 1467404 1 + A C rs17879004 1467403 + 1467383 1467423 41 CACCGTCCGAGTGGCCAACCCACCATTCTCCACGTGGATCC CACCGTCCGAGTGGCCAACCCCCCATTCTCCACGTGGATCC < 41bp 0.761890135698526 0.513276800002784 0.063061506 0.070596844 prediction 0.497226671391484 Functional Loss - IL3RA ENSG00000185291 CDS Human protein_coding chrX:1467403 chrX:1467404 synonymous SNV . 0 22 hm5C_associated_SNPs_65746 0 0 0 0 2 IL3RA chrX:1467438 5'GT 1467438 Upstream 35bp
chr1 155278658 155278658 1 + G T rs140698672 155278656 + 155278636 155278676 41 CGCCCTTAGTGTGGGGAGAGCGGGAACTACTCGACCCACAG CGCCCTTAGTGTGGGGAGAGCGTGAACTACTCGACCCACAG < 41bp 0.797523822497737 0.54891303345514 0.92152745 0.34844977 prediction 0.497221578085193 Functional Loss - FDPS ENSG00000160752 UTR5 Human protein_coding chr1:155278656 chr1:155278658 . . 0 23 hm5C_associated_SNPs_65747 0 0 1 0 1 FDPS chr1:155278756 5'GT 155278756 Upstream 99bp
chr16 70690919 70690919 1 + C T GBM 70690917 + 70690897 70690937 41 ATCTGTGGGTCTTGGTGAGCCTCAGTGCCACTGAGTCGGTG ATCTGTGGGTCTTGGTGAGCCTTAGTGCCACTGAGTCGGTG < 41bp 0.748609473960129 0.48560311605883 0.2797791 0.16399652 prediction 0.497218947920259 Functional Loss - IL34 ENSG00000157368 CDS Human protein_coding chr16:70690917 chr16:70690919 synonymous SNV . 0 23 hm5C_associated_SNPs_65748 0 0 0 0 2 IL34 chr16:70690863 3'AG 70690863 Downstream 57bp
chr16 70690919 70690919 1 + C T GBM 70690917 + 70690897 70690937 41 ATCTGTGGGTCTTGGTGAGCCTCAGTGCCACTGAGTCGGTG ATCTGTGGGTCTTGGTGAGCCTTAGTGCCACTGAGTCGGTG < 41bp 0.748609473960129 0.48560311605883 0.2797791 0.16399652 prediction 0.497218947920259 Functional Loss - IL34 ENSG00000157368 CDS Human protein_coding chr16:70690917 chr16:70690919 synonymous SNV . 0 23 hm5C_associated_SNPs_65748 0 0 0 0 2 IL34 chr16:70690866 3'AG 70690866 Downstream 54bp
chr5 36153144 36153144 1 + G T STAD 36153142 + 36153122 36153162 41 GCTAAATCGAGAGAACTTTCCAGGTAAGGACATGAGGGTAA GCTAAATCGAGAGAACTTTCCATGTAAGGACATGAGGGTAA < 41bp 0.748608678884904 0.41159862276597 0.709384 0.4152628 prediction 0.497217357769808 Functional Loss - SKP2 ENSG00000145604 CDS Human protein_coding chr5:36153142 chr5:36153144 nonsynonymous SNV 0.987 2 23 hm5C_associated_SNPs_65749 0 0 1 0 1 SKP2 chr5:36153144 5'GT 36153144 Upstream 1bp
chrX 36328954 36328954 1 + G T UCEC 36328952 + 36328932 36328972 41 ACTTATCTTCAAACAGTTTACAGAATGGAAATTCTACTTAT ACTTATCTTCAAACAGTTTACATAATGGAAATTCTACTTAT < 41bp 0.74860835136976 0.427779460150175 0.047158897 0.035130024 prediction 0.49721670273952 Functional Loss - CFAP47 ENSG00000205081 CDS Human other chrX:36328952 chrX:36328954 stopgain 0.605 0 23 hm5C_associated_SNPs_65750 0 0 0 0 1 CFAP47 chrX:36328948 3'AG 36328948 Downstream 7bp
chr3 15477986 15477986 1 + C T BLCA 15477984 + 15477964 15478004 41 GGACAATGGCCCAGCCTCTCCTCCGCAGCCTTCACACCAGC GGACAATGGCCCAGCCTCTCCTTCGCAGCCTTCACACCAGC < 41bp 0.748602625959949 0.459931898362369 0.21487504 0.17046776 prediction 0.497205251919899 Functional Loss - EAF1 ENSG00000144597 CDS Human protein_coding chr3:15477984 chr3:15477986 nonsynonymous SNV 0.024 0 23 hm5C_associated_SNPs_65752 0 0 0 0 1 EAF1 chr3:15478082 5'GT 15478082 Upstream 97bp
chr16 10996625 10996625 1 + G T LUAD 10996623 + 10996603 10996643 41 GCTCTGGCAAATCTCTGAGGCTGGAACAGGGGTCTCCAGTA GCTCTGGCAAATCTCTGAGGCTTGAACAGGGGTCTCCAGTA < 41bp 0.748594790342457 0.402501994181037 0.09867442 0.0047831237 prediction 0.497189580684915 Functional Loss - CIITA ENSG00000179583 CDS Human protein_coding chr16:10996623 chr16:10996625 stopgain 0.153 1 23 hm5C_associated_SNPs_65753 0 0 0 0 1 CIITA chr16:10996658 5'GT 10996658 Upstream 34bp
chr13 47315857 47315857 1 + C T CESC 47315855 + 47315835 47315875 41 CTGTTGACACTCTGCTGGCACTCGGGGAGAAAGCCCCACCA CTGTTGACACTCTGCTGGCACTTGGGGAGAAAGCCCCACCA < 41bp 0.748571086998734 0.477646703560038 0.6053774 0.8633458 prediction 0.497142173997468 Functional Loss - LRCH1 ENSG00000136141 CDS Human protein_coding chr13:47315855 chr13:47315857 synonymous SNV . 0 23 hm5C_associated_SNPs_65757 0 0 1 0 1 LRCH1 chr13:47315777 3'AG 47315777 Downstream 81bp
chr13 47315858 47315858 1 + G T THCA 47315855 + 47315835 47315875 41 CTGTTGACACTCTGCTGGCACTCGGGGAGAAAGCCCCACCA CTGTTGACACTCTGCTGGCACTCTGGGAGAAAGCCCCACCA < 41bp 0.748571086998734 0.370540091381527 0.6053774 0.22780061 prediction 0.497142173997468 Functional Loss - LRCH1 ENSG00000136141 CDS Human protein_coding chr13:47315855 chr13:47315858 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_65758 0 0 1 0 1 LRCH1 chr13:47315777 3'AG 47315777 Downstream 82bp
chr20 62895850 62895850 1 + G T SARC 62895847 + 62895827 62895867 41 TAGAGTATGCAAAGCAGAAACTGGACTTCTTCATCAGAACA TAGAGTATGCAAAGCAGAAACTGTACTTCTTCATCAGAACA < 41bp 0.748549869179085 0.407820039654954 0.7965071 0.2632537 prediction 0.49709973835817 Functional Loss - PCMTD2 ENSG00000203880 CDS Human protein_coding chr20:62895847 chr20:62895850 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_65763 0 0 1 0 2 PCMTD2 chr20:62895782 3'AG 62895782 Downstream 69bp
chr20 62895850 62895850 1 + G T SARC 62895847 + 62895827 62895867 41 TAGAGTATGCAAAGCAGAAACTGGACTTCTTCATCAGAACA TAGAGTATGCAAAGCAGAAACTGTACTTCTTCATCAGAACA < 41bp 0.748549869179085 0.407820039654954 0.7965071 0.2632537 prediction 0.49709973835817 Functional Loss - PCMTD2 ENSG00000203880 CDS Human protein_coding chr20:62895847 chr20:62895850 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_65763 0 0 1 0 2 PCMTD2 chr20:62895884 5'GT 62895884 Upstream 35bp
chr5 37396597 37396597 1 + C T SKCM 37396595 + 37396575 37396615 41 ATTTTATGGAGGAAGATATCCTCGGTCCTTTACCTCCACCT ATTTTATGGAGGAAGATATCCTTGGTCCTTTACCTCCACCT < 41bp 0.748549689371725 0.477513028499851 0.765738 0.31164527 prediction 0.49709937874345 Functional Loss - WDR70 ENSG00000082068 CDS Human protein_coding chr5:37396595 chr5:37396597 synonymous SNV . 0 23 hm5C_associated_SNPs_65764 0 0 1 0 1 WDR70 chr5:37396672 5'GT 37396672 Upstream 76bp
chr12 57965167 57965167 1 + G T SKCM 57965164 + 57965144 57965184 41 TCAAGCAGCAAATGCTGGACCAGGAAGAGGTAATAGGAGGG TCAAGCAGCAAATGCTGGACCAGTAAGAGGTAATAGGAGGG < 41bp 0.748539876312519 0.353076016401042 0.8309255 0.38961583 prediction 0.497079752625037 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57965164 chr12:57965167 stopgain 1.000 1 24 hm5C_associated_SNPs_65768 0 0 1 0 2 KIF5A chr12:57965104 3'AG 57965104 Downstream 64bp
chr12 57965167 57965167 1 + G T SKCM 57965164 + 57965144 57965184 41 TCAAGCAGCAAATGCTGGACCAGGAAGAGGTAATAGGAGGG TCAAGCAGCAAATGCTGGACCAGTAAGAGGTAATAGGAGGG < 41bp 0.748539876312519 0.353076016401042 0.8309255 0.38961583 prediction 0.497079752625037 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57965164 chr12:57965167 stopgain 1.000 1 24 hm5C_associated_SNPs_65768 0 0 1 0 2 KIF5A chr12:57965172 5'GT 57965172 Upstream 6bp
chrX 55028760 55028760 1 + G T UCEC 55028758 + 55028738 55028778 41 TGAGTGGCCTGTTTGCCACCCAGAATGGGGATGTTGGTTGC TGAGTGGCCTGTTTGCCACCCATAATGGGGATGTTGGTTGC < 41bp 0.748538692296248 0.404625819318563 0.2040196 0.08084142 prediction 0.497077384592496 Functional Loss - APEX2 ENSG00000169188 CDS Human protein_coding chrX:55028758 chrX:55028760 nonsynonymous SNV 0.793 0 23 hm5C_associated_SNPs_65771 0 0 1 0 1 APEX2 chrX:55028684 3'AG 55028684 Downstream 77bp
chr17 41001198 41001198 1 + C T UCEC 41001196 + 41001176 41001216 41 GCTACAGCGCCCACAGCTGACTCGGCAGGTCCTGGGAAAGG GCTACAGCGCCCACAGCTGACTTGGCAGGTCCTGGGAAAGG < 41bp 0.801435944036742 0.552898089360193 0.111665756 0.19169894 prediction 0.497075709353097 Functional Loss - AOC2 ENSG00000131480 CDS Human protein_coding chr17:41001196 chr17:41001198 nonsynonymous SNV 0.981 3 23 hm5C_associated_SNPs_65773 0 0 1 0 1 AOC2 chr17:41001103 3'AG 41001103 Downstream 96bp
chr20 62614414 62614414 1 + C T SKCM 62614412 + 62614392 62614432 41 TCCTGCAGCGCCACTGGCTTCACCACGCGGTCAGACATTGG TCCTGCAGCGCCACTGGCTTCATCACGCGGTCAGACATTGG < 41bp 0.748535891476815 0.465325958198197 0.58147997 0.4955236 prediction 0.49707178295363 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62614412 chr20:62614414 nonsynonymous SNV 0.987 3 23 hm5C_associated_SNPs_65774 0 0 1 0 1 PRPF6 chr20:62614400 3'AG 62614400 Downstream 15bp
chr1 70503849 70503849 1 + G C LUAD 70503845 + 70503825 70503865 41 ATTCAAAGCCATTACTCAGCCAGCGGGAGGCTGTTCCCCCA ATTCAAAGCCATTACTCAGCCAGCCGGAGGCTGTTCCCCCA < 41bp 0.82192106011524 0.573391245564256 0.81609535 0.3219573 prediction 0.497059629101968 Functional Loss - LRRC7 ENSG00000033122 CDS Human protein_coding chr1:70503845 chr1:70503849 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_65775 0 0 0 0 1 LRRC7 chr1:70503796 3'AG 70503796 Downstream 54bp
chr12 113398921 113398921 1 + G A rs199778647 113398918 + 113398898 113398938 41 ACCAAATCCCCAGGTCTACTCGAGGCTCCTCACCAGTGGCT ACCAAATCCCCAGGTCTACTCGAAGCTCCTCACCAGTGGCT < 41bp 0.74852920727901 0.493824852494392 0.9369198 0.91895646 prediction 0.497058414558019 Functional Loss - OAS3 ENSG00000111331 CDS Human protein_coding chr12:113398918 chr12:113398921 nonsynonymous SNV 0.015 0 24 hm5C_associated_SNPs_65776 0 0 0 0 1 OAS3 chr12:113398876 3'AG 113398876 Downstream 46bp
chr3 195395454 195395454 1 + G T LUSC 195395451 + 195395431 195395471 41 AGCACCAGCGACGGCACGGCCATGATCACCAGGGCAGGCCT AGCACCAGCGACGGCACGGCCATTATCACCAGGGCAGGCCT < 41bp 0.748528483610001 0.358231097726737 0.073785156 0.050891727 prediction 0.497056967220003 Functional Loss - SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195395451 chr3:195395454 . . 0 24 hm5C_associated_SNPs_65777 0 0 0 0 2 SDHAP2 chr3:195395390 3'AG 195395390 Downstream 65bp
chr3 195395454 195395454 1 + G T LUSC 195395451 + 195395431 195395471 41 AGCACCAGCGACGGCACGGCCATGATCACCAGGGCAGGCCT AGCACCAGCGACGGCACGGCCATTATCACCAGGGCAGGCCT < 41bp 0.748528483610001 0.358231097726737 0.073785156 0.050891727 prediction 0.497056967220003 Functional Loss - SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195395451 chr3:195395454 . . 0 24 hm5C_associated_SNPs_65777 0 0 0 0 2 SDHAP2 chr3:195395512 5'GT 195395512 Upstream 59bp
chr12 123333067 123333067 1 + C T BLCA 123333065 + 123333045 123333085 41 GCTTTCACCTTCTGGTCCTACGCCATTGGGCTGCCGCTGCC GCTTTCACCTTCTGGTCCTACGTCATTGGGCTGCCGCTGCC < 41bp 0.813289093380075 0.564765054285098 0.43653718 0.206406 prediction 0.497048078189954 Functional Loss - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123333065 chr12:123333067 nonsynonymous SNV 0.590 2 23 hm5C_associated_SNPs_65780 0 0 0 0 2 HIP1R chr12:123333013 3'AG 123333013 Downstream 55bp
chr12 123333067 123333067 1 + C T BLCA 123333065 + 123333045 123333085 41 GCTTTCACCTTCTGGTCCTACGCCATTGGGCTGCCGCTGCC GCTTTCACCTTCTGGTCCTACGTCATTGGGCTGCCGCTGCC < 41bp 0.813289093380075 0.564765054285098 0.43653718 0.206406 prediction 0.497048078189954 Functional Loss - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123333065 chr12:123333067 nonsynonymous SNV 0.590 2 23 hm5C_associated_SNPs_65780 0 0 0 0 2 HIP1R chr12:123333155 5'GT 123333155 Upstream 89bp
chr5 74647131 74647131 1 + G T UCEC 74647128 + 74647108 74647148 41 AGGAAGAGACAGGGATAAACCGAGAAAGAAAAGGTAACTTG AGGAAGAGACAGGGATAAACCGATAAAGAAAAGGTAACTTG < 41bp 0.899421808007586 0.650898297320621 0.8537251 0.477468 prediction 0.49704702137393 Functional Loss - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74647128 chr5:74647131 stopgain 0.871 0 24 hm5C_associated_SNPs_65781 0 0 1 0 1 HMGCR chr5:74647140 5'GT 74647140 Upstream 10bp
chr14 70171364 70171364 1 + A T SKCM 70171360 + 70171340 70171380 41 ACTTGGGGTCCCCACGCTGTCTATAGTGGCTTCTACTGCCA ACTTGGGGTCCCCACGCTGTCTATTGTGGCTTCTACTGCCA < 41bp 0.748514201035021 0.405893932237049 0.25149107 0.039733797 prediction 0.497028402070041 Functional Loss - SUSD6 ENSG00000100647 CDS Human protein_coding chr14:70171360 chr14:70171364 synonymous SNV . 0 25 hm5C_associated_SNPs_65783 0 0 1 0 2 SUSD6 chr14:70171321 3'AG 70171321 Downstream 44bp
chr14 70171364 70171364 1 + A T SKCM 70171360 + 70171340 70171380 41 ACTTGGGGTCCCCACGCTGTCTATAGTGGCTTCTACTGCCA ACTTGGGGTCCCCACGCTGTCTATTGTGGCTTCTACTGCCA < 41bp 0.748514201035021 0.405893932237049 0.25149107 0.039733797 prediction 0.497028402070041 Functional Loss - SUSD6 ENSG00000100647 CDS Human protein_coding chr14:70171360 chr14:70171364 synonymous SNV . 0 25 hm5C_associated_SNPs_65783 0 0 1 0 2 SUSD6 chr14:70171459 5'GT 70171459 Upstream 96bp
chr5 148695461 148695461 1 + G T LUSC 148695459 + 148695439 148695479 41 ACTGTTCTACCCTTGGCCGCCGGGAGACCTGTGATCACGGT ACTGTTCTACCCTTGGCCGCCGTGAGACCTGTGATCACGGT < 41bp 0.889881679208272 0.641373042629588 0.6461492 0.16720876 prediction 0.497017273157368 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148695459 chr5:148695461 synonymous SNV . 0 23 hm5C_associated_SNPs_65785 0 0 0 0 2 AFAP1L1 chr5:148695384 3'AG 148695384 Downstream 78bp
chr5 148695461 148695461 1 + G T LUSC 148695459 + 148695439 148695479 41 ACTGTTCTACCCTTGGCCGCCGGGAGACCTGTGATCACGGT ACTGTTCTACCCTTGGCCGCCGTGAGACCTGTGATCACGGT < 41bp 0.889881679208272 0.641373042629588 0.6461492 0.16720876 prediction 0.497017273157368 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148695459 chr5:148695461 synonymous SNV . 0 23 hm5C_associated_SNPs_65785 0 0 0 0 2 AFAP1L1 chr5:148695477 5'GT 148695477 Upstream 17bp
chr5 162945236 162945236 1 + G T UCEC 162945233 + 162945213 162945253 41 TGTCCTAGGAGCACAACGTCCGAGAAATGCTCAGCTTGACT TGTCCTAGGAGCACAACGTCCGATAAATGCTCAGCTTGACT < 41bp 0.893658083204393 0.645158831156745 0.4955603 0.2234573 prediction 0.496998504095295 Functional Loss - MAT2B ENSG00000038274 CDS Human protein_coding chr5:162945233 chr5:162945236 nonsynonymous SNV 0.988 0 24 hm5C_associated_SNPs_65789 0 0 1 1 1 MAT2B chr5:162945199 3'AG 162945199 Downstream 38bp
chr1 46033816 46033816 1 + C T SKCM 46033814 + 46033794 46033834 41 GTCGGCAGATTGATGACATACTCAGTGTGGCCTCCGTGCGT GTCGGCAGATTGATGACATACTTAGTGTGGCCTCCGTGCGT < 41bp 0.806601769105767 0.558123336196232 0.026247442 0.0477809 prediction 0.496956865819071 Functional Loss - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46033814 chr1:46033816 synonymous SNV . 0 23 hm5C_associated_SNPs_65793 0 0 1 0 1 AKR1A1 chr1:46033849 5'GT 46033849 Upstream 34bp
chr22 29438502 29438502 1 + G C LIHC 29438501 + 29438481 29438521 41 AGGCCAAGCGAGCAGTACAGCGGGGAGCTACTGCAGTCATC AGGCCAAGCGAGCAGTACAGCCGGGAGCTACTGCAGTCATC < 41bp 0.748470297280754 0.423558836115529 0.9003327 0.7928475 prediction 0.496940594561508 Functional Loss - ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29438501 chr22:29438502 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_65794 0 0 1 0 2 ZNRF3 chr22:29438483 3'AG 29438483 Downstream 20bp
chr22 29438502 29438502 1 + G C LIHC 29438501 + 29438481 29438521 41 AGGCCAAGCGAGCAGTACAGCGGGGAGCTACTGCAGTCATC AGGCCAAGCGAGCAGTACAGCCGGGAGCTACTGCAGTCATC < 41bp 0.748470297280754 0.423558836115529 0.9003327 0.7928475 prediction 0.496940594561508 Functional Loss - ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29438501 chr22:29438502 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_65794 0 0 1 0 2 ZNRF3 chr22:29438557 5'GT 29438557 Upstream 56bp
chr16 19710946 19710946 1 + C T STAD 19710944 + 19710924 19710964 41 TGTGGCACCTGGCACAGAGGCACGGCTGTGCAGACACCAGG TGTGGCACCTGGCACAGAGGCATGGCTGTGCAGACACCAGG < 41bp 0.78948344713878 0.541014819897967 0.1100598 0.1992493 prediction 0.496937254481626 Functional Loss - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19710944 chr16:19710946 synonymous SNV . 0 23 hm5C_associated_SNPs_65796 0 0 1 0 1 C16orf62 chr16:19710970 5'GT 19710970 Upstream 25bp
chr17 7350470 7350470 1 + G A SKCM 7350467 + 7350447 7350487 41 TATCGCAGCAGCTGCAGCATCCAGGTTTCCGGCCTCCACAT TATCGCAGCAGCTGCAGCATCCAAGTTTCCGGCCTCCACAT < 41bp 0.748466985021426 0.491653336766228 0.89740187 0.70537347 prediction 0.496933970042852 Functional Loss - CHRNB1 ENSG00000170175 CDS Human protein_coding chr17:7350467 chr17:7350470 synonymous SNV . 0 24 hm5C_associated_SNPs_65797 0 0 0 0 1 CHRNB1 chr17:7350470 5'GT 7350470 Upstream 1bp
chr11 60889355 60889355 1 + T C UCEC 60889354 + 60889334 60889374 41 CTTTGGGAGAGAAATTCCTACTGCAAGAAGGTGTTTGTCAC CTTTGGGAGAGAAATTCCTACCGCAAGAAGGTGTTTGTCAC < 41bp 0.750775268231344 0.5023144808431 0.39086682 0.122207135 prediction 0.496921574776488 Functional Loss - CD5 ENSG00000110448 CDS Human protein_coding chr11:60889354 chr11:60889355 nonsynonymous SNV 0.401 4 22 hm5C_associated_SNPs_65800 0 0 0 0 1 CD5 chr11:60889376 5'GT 60889376 Upstream 22bp
chr14 24617532 24617532 1 + C T COAD 24617530 + 24617510 24617550 41 AACCAGATGGGTTGAGCTTCCCCGAAGGGCAGGAGGAGCCA AACCAGATGGGTTGAGCTTCCCTGAAGGGCAGGAGGAGCCA < 41bp 0.748454105775736 0.468660483534943 0.14404482 0.08947712 prediction 0.496908211551473 Functional Loss - RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617530 chr14:24617532 synonymous SNV . 0 23 hm5C_associated_SNPs_65802 0 0 1 0 2 RNF31 chr14:24617467 3'AG 24617467 Downstream 66bp
chr14 24617532 24617532 1 + C T COAD 24617530 + 24617510 24617550 41 AACCAGATGGGTTGAGCTTCCCCGAAGGGCAGGAGGAGCCA AACCAGATGGGTTGAGCTTCCCTGAAGGGCAGGAGGAGCCA < 41bp 0.748454105775736 0.468660483534943 0.14404482 0.08947712 prediction 0.496908211551473 Functional Loss - RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617530 chr14:24617532 synonymous SNV . 0 23 hm5C_associated_SNPs_65802 0 0 1 0 2 RNF31 chr14:24617622 5'GT 24617622 Upstream 91bp
chr14 24617533 24617533 1 + G T HNSC 24617530 + 24617510 24617550 41 AACCAGATGGGTTGAGCTTCCCCGAAGGGCAGGAGGAGCCA AACCAGATGGGTTGAGCTTCCCCTAAGGGCAGGAGGAGCCA < 41bp 0.748454105775736 0.364319740593267 0.14404482 0.06288692 prediction 0.496908211551473 Functional Loss - RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617530 chr14:24617533 stopgain 0.991 1 24 hm5C_associated_SNPs_65803 0 0 1 0 2 RNF31 chr14:24617467 3'AG 24617467 Downstream 67bp
chr14 24617533 24617533 1 + G T HNSC 24617530 + 24617510 24617550 41 AACCAGATGGGTTGAGCTTCCCCGAAGGGCAGGAGGAGCCA AACCAGATGGGTTGAGCTTCCCCTAAGGGCAGGAGGAGCCA < 41bp 0.748454105775736 0.364319740593267 0.14404482 0.06288692 prediction 0.496908211551473 Functional Loss - RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617530 chr14:24617533 stopgain 0.991 1 24 hm5C_associated_SNPs_65803 0 0 1 0 2 RNF31 chr14:24617622 5'GT 24617622 Upstream 90bp
chr16 818678 818678 1 + G C BLCA 818674 + 818654 818694 41 TCTCGGGGACGCCCTGCCTCCTAGGACCTGGACCTGTTCTC TCTCGGGGACGCCCTGCCTCCTAGCACCTGGACCTGTTCTC < 41bp 0.815532694579817 0.567083219770676 0.24152577 0.123393536 prediction 0.496898949618283 Functional Loss - MSLN ENSG00000102854 CDS Human protein_coding chr16:818674 chr16:818678 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_65804 0 0 0 0 1 MSLN chr16:818648 3'AG 818648 Downstream 31bp
chr1 22895810 22895810 1 + C T rs367916042 22895808 + 22895788 22895828 41 TGCTGGACACGTCGACCATCCACGGGGACTGGGGCTGGCTC TGCTGGACACGTCGACCATCCATGGGGACTGGGGCTGGCTC < 41bp 0.775709428670383 0.527263889848765 0.5952621 0.42247048 prediction 0.496891077643235 Functional Loss - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22895808 chr1:22895810 synonymous SNV . 0 23 hm5C_associated_SNPs_65806 0 0 1 0 2 EPHA8 chr1:22895782 3'AG 22895782 Downstream 29bp
chr1 22895810 22895810 1 + C T rs367916042 22895808 + 22895788 22895828 41 TGCTGGACACGTCGACCATCCACGGGGACTGGGGCTGGCTC TGCTGGACACGTCGACCATCCATGGGGACTGGGGCTGGCTC < 41bp 0.775709428670383 0.527263889848765 0.5952621 0.42247048 prediction 0.496891077643235 Functional Loss - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22895808 chr1:22895810 synonymous SNV . 0 23 hm5C_associated_SNPs_65806 0 0 1 0 2 EPHA8 chr1:22895846 5'GT 22895846 Upstream 37bp
chr15 71256270 71256270 1 + C T STAD 71256268 + 71256248 71256288 41 CAGCTAGATATGAAGAGAATCACGGTGAGAACCCTTCCAAA CAGCTAGATATGAAGAGAATCATGGTGAGAACCCTTCCAAA < 41bp 0.788325656715336 0.539883838832477 0.23263729 0.2653265 prediction 0.496883635765717 Functional Loss - LRRC49 ENSG00000137821 CDS Human protein_coding chr15:71256268 chr15:71256270 nonsynonymous SNV 0.989 4 23 hm5C_associated_SNPs_65807 0 0 0 0 1 LRRC49 chr15:71256271 5'GT 71256271 Upstream 2bp
chr12 20868121 20868121 1 + G C LUAD 20868117 + 20868097 20868137 41 CCATGTGGATTTATGTTTTCCTGGGCAATCTTCTTCGTGGA CCATGTGGATTTATGTTTTCCTGGCCAATCTTCTTCGTGGA < 41bp 0.748439136569924 0.451244174429487 0.23583406 0.11774513 prediction 0.496878273139848 Functional Loss - SLCO1C1 ENSG00000139155 CDS Human protein_coding chr12:20868117 chr12:20868121 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_65808 0 0 0 0 2 SLCO1C1 chr12:20868073 3'AG 20868073 Downstream 49bp
chr12 20868121 20868121 1 + G C LUAD 20868117 + 20868097 20868137 41 CCATGTGGATTTATGTTTTCCTGGGCAATCTTCTTCGTGGA CCATGTGGATTTATGTTTTCCTGGCCAATCTTCTTCGTGGA < 41bp 0.748439136569924 0.451244174429487 0.23583406 0.11774513 prediction 0.496878273139848 Functional Loss - SLCO1C1 ENSG00000139155 CDS Human protein_coding chr12:20868117 chr12:20868121 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_65808 0 0 0 0 2 SLCO1C1 chr12:20868219 5'GT 20868219 Upstream 99bp
chr15 22954217 22954217 1 + C T STAD 22954215 + 22954195 22954235 41 CTGTGTCCCCCGCAGGTGATCGCCATGATCAAAGGCCTGCA CTGTGTCCCCCGCAGGTGATCGTCATGATCAAAGGCCTGCA < 41bp 0.810626712363189 0.562194697441897 0.6359961 0.30345637 prediction 0.496864029842583 Functional Loss - CYFIP1 ENSG00000068793 CDS Human other chr15:22954215 chr15:22954217 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_65809 0 0 1 0 1 CYFIP1 chr15:22954210 3'AG 22954210 Downstream 8bp
chr12 42836513 42836513 1 + C T SKCM 42836511 + 42836491 42836531 41 AAATGGATCACGACGGAACCCCCGAAAACGAAGGCGAAGAG AAATGGATCACGACGGAACCCCTGAAAACGAAGGCGAAGAG < 41bp 0.780228369822589 0.531799841464914 0.026444793 0.04280427 prediction 0.49685705671535 Functional Loss - PPHLN1 ENSG00000134283 CDS Human protein_coding chr12:42836511 chr12:42836513 synonymous SNV . 0 23 hm5C_associated_SNPs_65810 0 0 1 0 1 PPHLN1 chr12:42836543 5'GT 42836543 Upstream 31bp
chr16 70693588 70693588 1 + A T STAD 70693584 + 70693564 70693604 41 TGAATGCCCCAGGGCCAAACCTGAAGCTGGTGCGGCCCAAA TGAATGCCCCAGGGCCAAACCTGATGCTGGTGCGGCCCAAA < 41bp 0.883190144021401 0.634764445391003 0.720702 0.5985397 prediction 0.496851397260796 Functional Loss - IL34 ENSG00000157368 CDS Human protein_coding chr16:70693584 chr16:70693588 nonsynonymous SNV 0.856 3 25 hm5C_associated_SNPs_65812 0 0 0 0 2 IL34 chr16:70693521 3'AG 70693521 Downstream 68bp
chr16 70693588 70693588 1 + A T STAD 70693584 + 70693564 70693604 41 TGAATGCCCCAGGGCCAAACCTGAAGCTGGTGCGGCCCAAA TGAATGCCCCAGGGCCAAACCTGATGCTGGTGCGGCCCAAA < 41bp 0.883190144021401 0.634764445391003 0.720702 0.5985397 prediction 0.496851397260796 Functional Loss - IL34 ENSG00000157368 CDS Human protein_coding chr16:70693584 chr16:70693588 nonsynonymous SNV 0.856 3 25 hm5C_associated_SNPs_65812 0 0 0 0 2 IL34 chr16:70693656 5'GT 70693656 Upstream 69bp
chr14 23311685 23311685 1 + C T PAAD 23311683 + 23311663 23311703 41 AGGCCATTCGCAAGGCGTTCCGCGTGTGGGAGAGTGCCACA AGGCCATTCGCAAGGCGTTCCGTGTGTGGGAGAGTGCCACA < 41bp 0.792994931514428 0.544569993993779 0.9112275 0.8885124 prediction 0.496849875041297 Functional Loss - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23311683 chr14:23311685 synonymous SNV . 0 23 hm5C_associated_SNPs_65813 0 0 1 0 1 MMP14 chr14:23311619 3'AG 23311619 Downstream 67bp
chr2 211473190 211473190 1 + G T GBM 211473188 + 211473168 211473208 41 CAGCCTGTTTTGAACCTAGCCTGGATTACATGGTCACCAAG CAGCCTGTTTTGAACCTAGCCTTGATTACATGGTCACCAAG < 41bp 0.74842334751277 0.41733066684421 0.32016808 0.075425625 prediction 0.496846695025539 Functional Loss - CPS1 ENSG00000021826 CDS Human protein_coding chr2:211473188 chr2:211473190 synonymous SNV . 0 23 hm5C_associated_SNPs_65814 0 0 1 0 1 CPS1 chr2:211473283 5'GT 211473283 Upstream 94bp
chr19 36033899 36033899 1 + G T TGCT 36033896 + 36033876 36033916 41 CTCCCCTCGCCAAAGTCATCCACGAGCGATTTGGGATCGTG CTCCCCTCGCCAAAGTCATCCACTAGCGATTTGGGATCGTG < 41bp 0.748420868484424 0.359468338267567 0.31100416 0.07691544 prediction 0.496841736968848 Functional Loss - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36033896 chr19:36033899 stopgain 0.616 1 24 hm5C_associated_SNPs_65815 0 0 0 0 2 GAPDHS chr19:36033847 3'AG 36033847 Downstream 53bp
chr19 36033899 36033899 1 + G T TGCT 36033896 + 36033876 36033916 41 CTCCCCTCGCCAAAGTCATCCACGAGCGATTTGGGATCGTG CTCCCCTCGCCAAAGTCATCCACTAGCGATTTGGGATCGTG < 41bp 0.748420868484424 0.359468338267567 0.31100416 0.07691544 prediction 0.496841736968848 Functional Loss - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36033896 chr19:36033899 stopgain 0.616 1 24 hm5C_associated_SNPs_65815 0 0 0 0 2 GAPDHS chr19:36033928 5'GT 36033928 Upstream 30bp
chr15 41146840 41146840 1 + C T SKCM 41146838 + 41146818 41146858 41 TGACCTTTCCTCTCTGCAGACACGAGTGGCTTTGACGAGCT TGACCTTTCCTCTCTGCAGACATGAGTGGCTTTGACGAGCT < 41bp 0.812588068308168 0.564169057443762 0.28139338 0.27592635 prediction 0.496838021728811 Functional Loss - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41146838 chr15:41146840 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_65816 0 0 0 0 2 SPINT1 chr15:41146837 3'AG 41146837 Downstream 4bp
chr15 41146840 41146840 1 + C T SKCM 41146838 + 41146818 41146858 41 TGACCTTTCCTCTCTGCAGACACGAGTGGCTTTGACGAGCT TGACCTTTCCTCTCTGCAGACATGAGTGGCTTTGACGAGCT < 41bp 0.812588068308168 0.564169057443762 0.28139338 0.27592635 prediction 0.496838021728811 Functional Loss - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41146838 chr15:41146840 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_65816 0 0 0 0 2 SPINT1 chr15:41146887 5'GT 41146887 Upstream 48bp
chr11 89405092 89405092 1 + G C LUAD 89405088 + 89405068 89405108 41 TCTGGGAGGTCACCGGGACTCATGGGTGTTTGGTGGTATTG TCTGGGAGGTCACCGGGACTCATGCGTGTTTGGTGGTATTG < 41bp 0.792439458616067 0.544032093639602 0.90738267 0.42222154 prediction 0.496814729952929 Functional Loss - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89405088 chr11:89405092 . . 0 25 hm5C_associated_SNPs_65817 0 0 0 0 2 FOLH1B chr11:89405055 3'AG 89405055 Downstream 38bp
chr11 89405092 89405092 1 + G C LUAD 89405088 + 89405068 89405108 41 TCTGGGAGGTCACCGGGACTCATGGGTGTTTGGTGGTATTG TCTGGGAGGTCACCGGGACTCATGCGTGTTTGGTGGTATTG < 41bp 0.792439458616067 0.544032093639602 0.90738267 0.42222154 prediction 0.496814729952929 Functional Loss - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89405088 chr11:89405092 . . 0 25 hm5C_associated_SNPs_65817 0 0 0 0 2 FOLH1B chr11:89405174 5'GT 89405174 Upstream 83bp
chr2 233897547 233897547 1 + A C UCEC 233897546 + 233897526 233897566 41 GCAGAGCTGATTGTCCTGCGCAGAGGAGACTACGACGCACC GCAGAGCTGATTGTCCTGCGCCGAGGAGACTACGACGCACC < 41bp 0.748404442588739 0.493075766806332 0.90054286 0.7924633 prediction 0.496808885177477 Functional Loss - NEU2 ENSG00000115488 CDS Human protein_coding chr2:233897546 chr2:233897547 synonymous SNV . 0 22 hm5C_associated_SNPs_65818 0 0 0 0 1 NEU2 chr2:233897582 5'GT 233897582 Upstream 36bp
chr16 67236130 67236130 1 + C T STAD 67236128 + 67236108 67236148 41 CAAGCACGAGTGCCCCTTTGCCCGGGGCAGCATCCAGCTGA CAAGCACGAGTGCCCCTTTGCCTGGGGCAGCATCCAGCTGA < 41bp 0.79121630785593 0.542812669677915 0.88268924 0.88923794 prediction 0.49680727635603 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67236128 chr16:67236130 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_65819 0 0 0 0 2 ELMO3 chr16:67236079 3'AG 67236079 Downstream 52bp
chr16 67236130 67236130 1 + C T STAD 67236128 + 67236108 67236148 41 CAAGCACGAGTGCCCCTTTGCCCGGGGCAGCATCCAGCTGA CAAGCACGAGTGCCCCTTTGCCTGGGGCAGCATCCAGCTGA < 41bp 0.79121630785593 0.542812669677915 0.88268924 0.88923794 prediction 0.49680727635603 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67236128 chr16:67236130 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_65819 0 0 0 0 2 ELMO3 chr16:67236187 5'GT 67236187 Upstream 58bp
chr15 66599253 66599253 1 + C T GBM 66599251 + 66599231 66599271 41 CCAGCAATGCTGCTATCTGCCACGGGAAAGAGGAGAGTCCA CCAGCAATGCTGCTATCTGCCATGGGAAAGAGGAGAGTCCA < 41bp 0.811088647032719 0.562697762187799 0.17951652 0.17637166 prediction 0.49678176968984 Functional Loss - DIS3L ENSG00000166938 CDS Human protein_coding chr15:66599251 chr15:66599253 nonsynonymous SNV 0.088 4 23 hm5C_associated_SNPs_65823 0 0 1 0 3 DIS3L chr15:66599162 3'AG 66599162 Downstream 92bp
chr15 66599253 66599253 1 + C T GBM 66599251 + 66599231 66599271 41 CCAGCAATGCTGCTATCTGCCACGGGAAAGAGGAGAGTCCA CCAGCAATGCTGCTATCTGCCATGGGAAAGAGGAGAGTCCA < 41bp 0.811088647032719 0.562697762187799 0.17951652 0.17637166 prediction 0.49678176968984 Functional Loss - DIS3L ENSG00000166938 CDS Human protein_coding chr15:66599251 chr15:66599253 nonsynonymous SNV 0.088 4 23 hm5C_associated_SNPs_65823 0 0 1 0 3 DIS3L chr15:66599235 3'AG 66599235 Downstream 19bp
chr15 66599253 66599253 1 + C T GBM 66599251 + 66599231 66599271 41 CCAGCAATGCTGCTATCTGCCACGGGAAAGAGGAGAGTCCA CCAGCAATGCTGCTATCTGCCATGGGAAAGAGGAGAGTCCA < 41bp 0.811088647032719 0.562697762187799 0.17951652 0.17637166 prediction 0.49678176968984 Functional Loss - DIS3L ENSG00000166938 CDS Human protein_coding chr15:66599251 chr15:66599253 nonsynonymous SNV 0.088 4 23 hm5C_associated_SNPs_65823 0 0 1 0 3 DIS3L chr15:66599290 5'GT 66599290 Upstream 38bp
chr1 154960590 154960590 1 + C T SKCM 154960588 + 154960568 154960608 41 CTTCAACCCCCAGGGACACACTCAGGACACCAACACCTTCT CTTCAACCCCCAGGGACACACTTAGGACACCAACACCTTCT < 41bp 0.798566575136512 0.55017569482974 0.0037423074 0.0068517923 prediction 0.496781760613543 Functional Loss - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154960588 chr1:154960590 stopgain 1.000 1 23 hm5C_associated_SNPs_65824 0 0 1 0 1 FLAD1 chr1:154960581 3'AG 154960581 Downstream 10bp
chr13 100959473 100959473 1 + G T THYM 100959471 + 100959451 100959491 41 AGTGGACAGTGGCATCCAACCAGGAAGTGATATTAGCATTT AGTGGACAGTGGCATCCAACCATGAAGTGATATTAGCATTT < 41bp 0.748377105846664 0.436063863652553 0.9039996 0.2808791 prediction 0.496754211693327 Functional Loss - PCCA ENSG00000175198 CDS Human protein_coding chr13:100959471 chr13:100959473 stopgain 1.000 1 23 hm5C_associated_SNPs_65828 0 0 1 2 2 PCCA chr13:100959446 3'AG 100959446 Downstream 28bp
chr13 100959473 100959473 1 + G T THYM 100959471 + 100959451 100959491 41 AGTGGACAGTGGCATCCAACCAGGAAGTGATATTAGCATTT AGTGGACAGTGGCATCCAACCATGAAGTGATATTAGCATTT < 41bp 0.748377105846664 0.436063863652553 0.9039996 0.2808791 prediction 0.496754211693327 Functional Loss - PCCA ENSG00000175198 CDS Human protein_coding chr13:100959471 chr13:100959473 stopgain 1.000 1 23 hm5C_associated_SNPs_65828 0 0 1 2 2 PCCA chr13:100959514 5'GT 100959514 Upstream 42bp
chr9 22451116 22451116 1 + T C UCEC 22451115 + 22451095 22451135 41 AATGGACAAGAAGAACTGATCTCCAAATCCCATCAGCTTTA AATGGACAAGAAGAACTGATCCCCAAATCCCATCAGCTTTA < 41bp 0.752577686429888 0.504203422755278 0.93808794 0.84316313 prediction 0.496748527349221 Functional Loss - DMRTA1 ENSG00000176399 CDS Human protein_coding chr9:22451115 chr9:22451116 nonsynonymous SNV 0.390 1 22 hm5C_associated_SNPs_65829 0 0 0 0 1 DMRTA1 chr9:22451063 3'AG 22451063 Downstream 54bp
chr18 29049253 29049253 1 + C T SKCM 29049251 + 29049231 29049271 41 ACCAGGTATGGCAGGCCGCACTCAGGGAGGCTGGGGCCTGC ACCAGGTATGGCAGGCCGCACTTAGGGAGGCTGGGGCCTGC < 41bp 0.784758316926258 0.536388681258901 0.07927972 0.20545533 prediction 0.496739271334713 Functional Loss - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29049251 chr18:29049253 nonsynonymous SNV 0.034 0 23 hm5C_associated_SNPs_65831 0 0 0 0 1 DSG3 chr18:29049312 5'GT 29049312 Upstream 60bp
chr8 28608183 28608183 1 + C T COAD 28608181 + 28608161 28608201 41 CTCCCGTTTCCAGGTGACCTCACGGTGGACATTCCGATGCC CTCCCGTTTCCAGGTGACCTCATGGTGGACATTCCGATGCC < 41bp 0.774892517424116 0.526524630018357 0.92675185 0.91288 prediction 0.496735774811517 Functional Loss - EXTL3 ENSG00000012232 CDS Human protein_coding chr8:28608181 chr8:28608183 nonsynonymous SNV 0.310 4 23 hm5C_associated_SNPs_65832 0 0 1 0 1 EXTL3 chr8:28608174 3'AG 28608174 Downstream 10bp
chr21 45859044 45859044 1 + G T HNSC 45859042 + 45859022 45859062 41 TTTGAAAACTTGCTGAAGTGCGGCATGGAGGTATTCCTGGC TTTGAAAACTTGCTGAAGTGCGTCATGGAGGTATTCCTGGC < 41bp 0.748364706922129 0.423891355363707 0.33030367 0.30747902 prediction 0.496729413844258 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45859042 chr21:45859044 nonsynonymous SNV 0.004 4 23 hm5C_associated_SNPs_65833 0 0 0 0 2 TRPM2 chr21:45858950 3'AG 45858950 Downstream 95bp
chr21 45859044 45859044 1 + G T HNSC 45859042 + 45859022 45859062 41 TTTGAAAACTTGCTGAAGTGCGGCATGGAGGTATTCCTGGC TTTGAAAACTTGCTGAAGTGCGTCATGGAGGTATTCCTGGC < 41bp 0.748364706922129 0.423891355363707 0.33030367 0.30747902 prediction 0.496729413844258 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45859042 chr21:45859044 nonsynonymous SNV 0.004 4 23 hm5C_associated_SNPs_65833 0 0 0 0 2 TRPM2 chr21:45859051 5'GT 45859051 Upstream 8bp
chr11 114311384 114311384 1 + G T UCEC 114311382 + 114311362 114311402 41 TTATTTTTAATTGCAGATGACAGGATTGGACATTGAGAAGG TTATTTTTAATTGCAGATGACATGATTGGACATTGAGAAGG < 41bp 0.748357141557825 0.431462521798458 0.40859282 0.14567897 prediction 0.496714283115649 Functional Loss - REXO2 ENSG00000076043 CDS Human protein_coding chr11:114311382 chr11:114311384 stopgain 1.000 1 23 hm5C_associated_SNPs_65835 0 0 1 0 2 REXO2 chr11:114311378 3'AG 114311378 Downstream 7bp
chr11 114311384 114311384 1 + G T UCEC 114311382 + 114311362 114311402 41 TTATTTTTAATTGCAGATGACAGGATTGGACATTGAGAAGG TTATTTTTAATTGCAGATGACATGATTGGACATTGAGAAGG < 41bp 0.748357141557825 0.431462521798458 0.40859282 0.14567897 prediction 0.496714283115649 Functional Loss - REXO2 ENSG00000076043 CDS Human protein_coding chr11:114311382 chr11:114311384 stopgain 1.000 1 23 hm5C_associated_SNPs_65835 0 0 1 0 2 REXO2 chr11:114311461 5'GT 114311461 Upstream 78bp
chr12 12788786 12788786 1 + G T KIRC 12788783 + 12788763 12788803 41 AAATTGACTTGAAAGCAAAACTTGAGAGGAGCCGGCAGAGT AAATTGACTTGAAAGCAAAACTTTAGAGGAGCCGGCAGAGT < 41bp 0.74835216101077 0.366438638683426 0.071925044 0.06483641 prediction 0.49670432202154 Functional Loss - CREBL2 ENSG00000111269 CDS Human protein_coding chr12:12788783 chr12:12788786 stopgain 0.999 1 24 hm5C_associated_SNPs_65837 0 0 1 0 1 CREBL2 chr12:12788711 3'AG 12788711 Downstream 76bp
chr20 61588288 61588288 1 + G T UCEC 61588286 + 61588266 61588306 41 TCTGGGGCTACTGCCTGACACAGGTTGTGGGCGGCCACCTC TCTGGGGCTACTGCCTGACACATGTTGTGGGCGGCCACCTC < 41bp 0.892699048344625 0.644349507186321 0.89042485 0.4174496 prediction 0.49669908231661 Functional Loss - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61588286 chr20:61588288 nonsynonymous SNV 0.939 4 23 hm5C_associated_SNPs_65840 0 0 1 0 1 SLC17A9 chr20:61588314 5'GT 61588314 Upstream 27bp
chr12 58002452 58002452 1 + A C UCS 58002451 + 58002431 58002471 41 TATCGGCACGTCCATGACCACAGGGAGACCGAATGTCATCA TATCGGCACGTCCATGACCACCGGGAGACCGAATGTCATCA < 41bp 0.748349216527172 0.487145501690674 0.8139715 0.3497556 prediction 0.496698433054345 Functional Loss - DTX3 ENSG00000178498 CDS Human protein_coding chr12:58002451 chr12:58002452 synonymous SNV . 0 22 hm5C_associated_SNPs_65841 0 0 1 0 1 DTX3 chr12:58002520 5'GT 58002520 Upstream 69bp
chr4 37848597 37848597 1 + G T LUAD 37848595 + 37848575 37848615 41 GCAATGAGTTGGGGGCCCTCCTGGGCTGGTGGCTTTTTACA GCAATGAGTTGGGGGCCCTCCTTGGCTGGTGGCTTTTTACA < 41bp 0.882127099306452 0.633778341800776 0.8813925 0.17104504 prediction 0.496697515011352 Functional Loss - PGM2 ENSG00000169299 CDS Human protein_coding chr4:37848595 chr4:37848597 synonymous SNV . 0 23 hm5C_associated_SNPs_65842 0 0 1 0 1 PGM2 chr4:37848552 3'AG 37848552 Downstream 46bp
chr15 85478748 85478748 1 + C T SKCM 85478746 + 85478726 85478766 41 GGCGACAGGAAGCAGTGGATCTCCGTGAGTGTCCCAGTCCC GGCGACAGGAAGCAGTGGATCTTCGTGAGTGTCCCAGTCCC < 41bp 0.783527285766358 0.535182770360034 0.35948727 0.21236584 prediction 0.496689030812647 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85478746 chr15:85478748 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_65844 0 0 0 0 1 SLC28A1 chr15:85478749 5'GT 85478749 Upstream 2bp
chr18 13621161 13621161 1 + C T LUSC 13621159 + 13621139 13621179 41 ATCATCATCGTCGTGGTGGTCACGGTGATGGTGGTGGTCAT ATCATCATCGTCGTGGTGGTCATGGTGATGGTGGTGGTCAT < 41bp 0.748344125830693 0.475853172803759 0.484933 0.4047857 prediction 0.496688251661385 Functional Loss - LDLRAD4 ENSG00000168675 CDS Human protein_coding chr18:13621159 chr18:13621161 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_65845 0 0 0 0 1 LDLRAD4 chr18:13621116 3'AG 13621116 Downstream 46bp
chr13 37012845 37012845 1 + C T UCEC 37012843 + 37012823 37012863 41 GACATCACGGAAGGCATGCGCACGATTCTGGTGGACTGGCT GACATCACGGAAGGCATGCGCATGATTCTGGTGGACTGGCT < 41bp 0.811780099475295 0.563444050483804 0.28403136 0.34137148 prediction 0.496672097982983 Functional Loss - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37012843 chr13:37012845 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_65847 0 0 0 0 1 CCNA1 chr13:37012781 3'AG 37012781 Downstream 65bp
chr1 158260990 158260990 1 + G T SARC 158260987 + 158260967 158261007 41 ATTTGTCAACCAATCCTGGGCACGAGGTCAGGGCTCAGGAT ATTTGTCAACCAATCCTGGGCACTAGGTCAGGGCTCAGGAT < 41bp 0.917352211346915 0.669024006900453 0.14235073 0.11269379 prediction 0.496656408892924 Functional Loss - CD1C ENSG00000158481 CDS Human protein_coding chr1:158260987 chr1:158260990 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_65849 0 0 0 0 1 CD1C chr1:158260924 3'AG 158260924 Downstream 67bp
chr2 99008427 99008427 1 + C T SKCM 99008425 + 99008405 99008445 41 CTTGGATGTGCTTGTACGAGCTCGGACAGGTGAGTGTGCCC CTTGGATGTGCTTGTACGAGCTTGGACAGGTGAGTGTGCCC < 41bp 0.767654428588273 0.519331609186942 0.40244657 0.31768978 prediction 0.496645638802662 Functional Loss - CNGA3 ENSG00000144191 CDS Human protein_coding chr2:99008425 chr2:99008427 nonsynonymous SNV 0.979 5 23 hm5C_associated_SNPs_65850 0 0 0 0 1 CNGA3 chr2:99008433 5'GT 99008433 Upstream 7bp
chr2 175265748 175265748 1 + A T LUAD 175265744 + 175265724 175265764 41 CCTTGAAAGAGCTGATACAGCTGAAAAAGCCCTCAATGTCA CCTTGAAAGAGCTGATACAGCTGATAAAGCCCTCAATGTCA < 41bp 0.748318163763831 0.424155567254447 0.0870384 0.0482212 prediction 0.496636327527661 Functional Loss - SCRN3 ENSG00000144306 CDS Human protein_coding chr2:175265744 chr2:175265748 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_65852 0 0 1 0 1 SCRN3 chr2:175265718 3'AG 175265718 Downstream 31bp
chr16 68845620 68845620 1 + C T COAD 68845618 + 68845598 68845638 41 ATGGAGGTCACAGCCACAGACGCGGACGATGATGTGAACAC ATGGAGGTCACAGCCACAGACGTGGACGATGATGTGAACAC < 41bp 0.748305521894706 0.472824541946946 0.24009857 0.15331116 prediction 0.496611043789411 Functional Loss - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68845618 chr16:68845620 nonsynonymous SNV 0.881 1 23 hm5C_associated_SNPs_65855 1 0 0 0 1 CDH1 chr16:68845587 3'AG 68845587 Downstream 34bp
chr3 108897305 108897305 1 + G T UCEC 108897302 + 108897282 108897322 41 AGGATCAGGGAAGTCAGAGCCCAGACCTCGGTTCACGGTGC AGGATCAGGGAAGTCAGAGCCCATACCTCGGTTCACGGTGC < 41bp 0.748298909214278 0.391714122798775 0.37238342 0.2601393 prediction 0.496597818428556 Functional Loss - LINC00488 ENSG00000214381 ncRNA_exonic Human lincRNA chr3:108897302 chr3:108897305 . . 0 24 hm5C_associated_SNPs_65857 0 0 0 1 1 LINC00488 chr3:108897264 3'AG 108897264 Downstream 42bp
chr11 74880267 74880267 1 + G T SARC 74880264 + 74880244 74880284 41 TCCCTGTGCCTGCCCACAACCTCGGCCCCAGCCTCGGCCCC TCCCTGTGCCTGCCCACAACCTCTGCCCCAGCCTCGGCCCC < 41bp 0.748285239632729 0.344784390154602 0.31060064 0.19981164 prediction 0.496570479265458 Functional Loss - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74880264 chr11:74880267 synonymous SNV . 0 24 hm5C_associated_SNPs_65861 0 0 0 0 1 SLCO2B1 chr11:74880218 3'AG 74880218 Downstream 50bp
chr15 77322907 77322907 1 + C T UCEC 77322905 + 77322885 77322925 41 GGGCTGAGTGGGAGCAGGAGCACCGGACCACCTGTGAGGTG GGGCTGAGTGGGAGCAGGAGCATCGGACCACCTGTGAGGTG < 41bp 0.750036062731358 0.501757300379496 0.5651256 0.54636556 prediction 0.496557524703723 Functional Loss - PSTPIP1 ENSG00000140368 CDS Human protein_coding chr15:77322905 chr15:77322907 synonymous SNV . 0 23 hm5C_associated_SNPs_65862 0 0 0 0 2 PSTPIP1 chr15:77322843 3'AG 77322843 Downstream 65bp
chr15 77322907 77322907 1 + C T UCEC 77322905 + 77322885 77322925 41 GGGCTGAGTGGGAGCAGGAGCACCGGACCACCTGTGAGGTG GGGCTGAGTGGGAGCAGGAGCATCGGACCACCTGTGAGGTG < 41bp 0.750036062731358 0.501757300379496 0.5651256 0.54636556 prediction 0.496557524703723 Functional Loss - PSTPIP1 ENSG00000140368 CDS Human protein_coding chr15:77322905 chr15:77322907 synonymous SNV . 0 23 hm5C_associated_SNPs_65862 0 0 0 0 2 PSTPIP1 chr15:77322922 5'GT 77322922 Upstream 16bp
chr17 61684797 61684797 1 + A C OV 61684793 + 61684773 61684813 41 AGCTGAGGATGTCAAGGAAACTGAAGATGAAGAAGAAAGGA AGCTGAGGATGTCAAGGAAACTGACGATGAAGAAGAAAGGA < 41bp 0.748275988161835 0.329396652690223 0.6288697 0.2751738 prediction 0.496551976323669 Functional Loss - TACO1 ENSG00000136463 CDS Human protein_coding chr17:61684793 chr17:61684797 nonsynonymous SNV 0.937 1 25 hm5C_associated_SNPs_65863 0 0 1 0 1 TACO1 chr17:61684824 5'GT 61684824 Upstream 28bp
chr15 45427483 45427483 1 + G T COAD 45427481 + 45427461 45427501 41 GACGGAGTCCCAGCAATCCCCGGGACCCGGTGAGGCGGGGA GACGGAGTCCCAGCAATCCCCGTGACCCGGTGAGGCGGGGA < 41bp 0.885906493256509 0.637631896731331 0.8977598 0.48952454 prediction 0.496549193050356 Functional Loss - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45427481 chr15:45427483 synonymous SNV . 0 23 hm5C_associated_SNPs_65864 0 0 0 0 1 DUOX1 chr15:45427489 5'GT 45427489 Upstream 7bp
chr17 34313607 34313607 1 - G A COAD 34313609 - 34313589 34313629 41 GACCAAGACTGAATCCTCCTCACGTGAGTGCAATGCCTTGT GACCAAGACTGAATCCTCCTCATGTGAGTGCAATGCCTTGT < 41bp 0.748263636798343 0.498740136499386 0.3209346 0.269454 prediction 0.496527273596687 Functional Loss - CCL14 ENSG00000213494;ENSG00000266956 CDS Human other chr17:34313609 chr17:34313607 stopgain 0.007 1 23 hm5C_associated_SNPs_65868 0 0 1 0 1 CCL14 chr17:34313607 5'GT 34313607 Upstream 1bp
chr10 102509565 102509565 1 + G C LUAD 102509561 + 102509541 102509581 41 GTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGCAT GTGAACGGCCGGCCCCTACCCGACCTGGTGAGGCAGCGCAT < 41bp 0.834021348660851 0.585761626385518 0.8409432 0.23004335 prediction 0.496519444550665 Functional Loss - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102509561 chr10:102509565 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_65870 0 0 0 0 2 PAX2 chr10:102509503 3'AG 102509503 Downstream 63bp
chr10 102509565 102509565 1 + G C LUAD 102509561 + 102509541 102509581 41 GTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGCAT GTGAACGGCCGGCCCCTACCCGACCTGGTGAGGCAGCGCAT < 41bp 0.834021348660851 0.585761626385518 0.8409432 0.23004335 prediction 0.496519444550665 Functional Loss - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102509561 chr10:102509565 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_65870 0 0 0 0 2 PAX2 chr10:102509506 3'AG 102509506 Downstream 60bp
chr9 97203305 97203305 1 + C T DLBC 97203303 + 97203283 97203323 41 ATTTCTGTGTCTGGAGTCTTCTCGGTCACGTTTTCTGTTAT ATTTCTGTGTCTGGAGTCTTCTTGGTCACGTTTTCTGTTAT < 41bp 0.748258643496297 0.460484979491658 0.52970344 0.38622117 prediction 0.496517286992593 Functional Loss - MFSD14B ENSG00000148110 CDS Human protein_coding chr9:97203303 chr9:97203305 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_65871 0 0 1 0 2 MFSD14B chr9:97203267 3'AG 97203267 Downstream 39bp
chr9 97203305 97203305 1 + C T DLBC 97203303 + 97203283 97203323 41 ATTTCTGTGTCTGGAGTCTTCTCGGTCACGTTTTCTGTTAT ATTTCTGTGTCTGGAGTCTTCTTGGTCACGTTTTCTGTTAT < 41bp 0.748258643496297 0.460484979491658 0.52970344 0.38622117 prediction 0.496517286992593 Functional Loss - MFSD14B ENSG00000148110 CDS Human protein_coding chr9:97203303 chr9:97203305 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_65871 0 0 1 0 2 MFSD14B chr9:97203381 5'GT 97203381 Upstream 77bp
chr3 189582119 189582119 1 + C T COAD 189582117 + 189582097 189582137 41 CTCCTCAGGGAGCTGTTATCCGCGCCATGCCTGTCTACAAA CTCCTCAGGGAGCTGTTATCCGTGCCATGCCTGTCTACAAA < 41bp 0.748258218824061 0.472302285125367 0.669278 0.26503283 prediction 0.496516437648122 Functional Loss - TP63 ENSG00000073282 CDS Human protein_coding chr3:189582117 chr3:189582119 synonymous SNV . 0 23 hm5C_associated_SNPs_65872 0 0 0 0 1 TP63 chr3:189582021 3'AG 189582021 Downstream 99bp
chr3 169501317 169501317 1 + A T STAD 169501313 + 169501293 169501333 41 TGGGAAAAGTTTTATTTCCTCAGGAGAGCTCAACAAACACT TGGGAAAAGTTTTATTTCCTCAGGTGAGCTCAACAAACACT < 41bp 0.854442229734727 0.606185735897412 0.45149273 0.46502927 prediction 0.49651298767463 Functional Loss - MYNN ENSG00000085274 CDS Human protein_coding chr3:169501313 chr3:169501317 synonymous SNV . 0 25 hm5C_associated_SNPs_65873 0 0 1 0 2 MYNN chr3:169501265 3'AG 169501265 Downstream 53bp
chr3 169501317 169501317 1 + A T STAD 169501313 + 169501293 169501333 41 TGGGAAAAGTTTTATTTCCTCAGGAGAGCTCAACAAACACT TGGGAAAAGTTTTATTTCCTCAGGTGAGCTCAACAAACACT < 41bp 0.854442229734727 0.606185735897412 0.45149273 0.46502927 prediction 0.49651298767463 Functional Loss - MYNN ENSG00000085274 CDS Human protein_coding chr3:169501313 chr3:169501317 synonymous SNV . 0 25 hm5C_associated_SNPs_65873 0 0 1 0 2 MYNN chr3:169501348 5'GT 169501348 Upstream 32bp
chr17 8160232 8160232 1 + C T STAD 8160230 + 8160210 8160250 41 AGTGCACAGGCCGCGGGGCCCACGTGGTGGCTGGCACTGCC AGTGCACAGGCCGCGGGGCCCATGTGGTGGCTGGCACTGCC < 41bp 0.748253908939209 0.483124060177281 0.7524916 0.56261444 prediction 0.496507817878417 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8160230 chr17:8160232 synonymous SNV . 0 23 hm5C_associated_SNPs_65874 0 0 1 0 2 PFAS chr17:8160153 3'AG 8160153 Downstream 80bp
chr17 8160232 8160232 1 + C T STAD 8160230 + 8160210 8160250 41 AGTGCACAGGCCGCGGGGCCCACGTGGTGGCTGGCACTGCC AGTGCACAGGCCGCGGGGCCCATGTGGTGGCTGGCACTGCC < 41bp 0.748253908939209 0.483124060177281 0.7524916 0.56261444 prediction 0.496507817878417 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8160230 chr17:8160232 synonymous SNV . 0 23 hm5C_associated_SNPs_65874 0 0 1 0 2 PFAS chr17:8160281 5'GT 8160281 Upstream 50bp
chr5 149001624 149001624 1 + A C LUSC 149001623 + 149001603 149001643 41 GGGCAGAGGGAAGCATGGCCCAGGTAAGGCCTCTGAGACTT GGGCAGAGGGAAGCATGGCCCCGGTAAGGCCTCTGAGACTT < 41bp 0.800045824782736 0.551800800725293 0.6765976 0.22073758 prediction 0.496490048114886 Functional Loss - ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:149001623 chr5:149001624 nonsynonymous SNV 0.905 1 22 hm5C_associated_SNPs_65875 0 0 0 0 1 ARHGEF37 chr5:149001625 5'GT 149001625 Upstream 2bp
chr3 183910676 183910676 1 + A C UCEC 183910672 + 183910652 183910692 41 GTGCTGTGGAACTGCTGGCACGCAAGTTTCCTGGTGAGTTA GTGCTGTGGAACTGCTGGCACGCACGTTTCCTGGTGAGTTA < 41bp 0.748243304126537 0.331671958312337 0.3497907 0.15583384 prediction 0.496486608253074 Functional Loss - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183910672 chr3:183910676 nonsynonymous SNV 0.991 1 25 hm5C_associated_SNPs_65876 0 0 1 0 2 ABCF3 chr3:183910593 3'AG 183910593 Downstream 84bp
chr3 183910676 183910676 1 + A C UCEC 183910672 + 183910652 183910692 41 GTGCTGTGGAACTGCTGGCACGCAAGTTTCCTGGTGAGTTA GTGCTGTGGAACTGCTGGCACGCACGTTTCCTGGTGAGTTA < 41bp 0.748243304126537 0.331671958312337 0.3497907 0.15583384 prediction 0.496486608253074 Functional Loss - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183910672 chr3:183910676 nonsynonymous SNV 0.991 1 25 hm5C_associated_SNPs_65876 0 0 1 0 2 ABCF3 chr3:183910684 5'GT 183910684 Upstream 9bp
chr10 5960384 5960384 1 + G T UCEC 5960382 + 5960362 5960402 41 ACCAGCAGATCTATACCTTCCGGGGTGCGGTCAACGCCCTG ACCAGCAGATCTATACCTTCCGTGGTGCGGTCAACGCCCTG < 41bp 0.892095450233105 0.643853233692107 0.89871097 0.39404655 prediction 0.496484433081997 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5960382 chr10:5960384 synonymous SNV . 0 23 hm5C_associated_SNPs_65878 0 0 0 0 2 FBXO18 chr10:5960305 3'AG 5960305 Downstream 80bp
chr10 5960384 5960384 1 + G T UCEC 5960382 + 5960362 5960402 41 ACCAGCAGATCTATACCTTCCGGGGTGCGGTCAACGCCCTG ACCAGCAGATCTATACCTTCCGTGGTGCGGTCAACGCCCTG < 41bp 0.892095450233105 0.643853233692107 0.89871097 0.39404655 prediction 0.496484433081997 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5960382 chr10:5960384 synonymous SNV . 0 23 hm5C_associated_SNPs_65878 0 0 0 0 2 FBXO18 chr10:5960441 5'GT 5960441 Upstream 58bp
chr11 10506497 10506497 1 + C T STAD 10506495 + 10506475 10506515 41 ATAACAAGAAGATGCTGGAGCACCAGGAGCCGCACAGCCTA ATAACAAGAAGATGCTGGAGCATCAGGAGCCGCACAGCCTA < 41bp 0.816294458776136 0.568054764102906 0.57545996 0.8273895 prediction 0.496479389346461 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10506495 chr11:10506497 synonymous SNV . 0 23 hm5C_associated_SNPs_65879 0 0 0 0 1 AMPD3 chr11:10506453 3'AG 10506453 Downstream 45bp
chr9 133498141 133498141 1 + G T SKCM 133498139 + 133498119 133498159 41 GGGATTGTAATAGGAAGAAACGGGGAAATGATCAAAAAGAT GGGATTGTAATAGGAAGAAACGTGGAAATGATCAAAAAGAT < 41bp 0.748233519523228 0.406646808105688 0.88948286 0.29810494 prediction 0.496467039046456 Functional Loss - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133498139 chr9:133498141 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_65881 0 0 1 0 2 FUBP3 chr9:133498095 3'AG 133498095 Downstream 47bp
chr9 133498141 133498141 1 + G T SKCM 133498139 + 133498119 133498159 41 GGGATTGTAATAGGAAGAAACGGGGAAATGATCAAAAAGAT GGGATTGTAATAGGAAGAAACGTGGAAATGATCAAAAAGAT < 41bp 0.748233519523228 0.406646808105688 0.88948286 0.29810494 prediction 0.496467039046456 Functional Loss - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133498139 chr9:133498141 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_65881 0 0 1 0 2 FUBP3 chr9:133498197 5'GT 133498197 Upstream 57bp
chr1 156132760 156132760 1 + G T rs554765573 156132758 + 156132738 156132778 41 GGTTGGCGGGACCAGGAGCTCTGCGGTTTGTGCCTTCTCTC GGTTGGCGGGACCAGGAGCTCTTCGGTTTGTGCCTTCTCTC < 41bp 0.881565616147388 0.633335133399704 0.8520112 0.47202015 prediction 0.496460965495368 Functional Loss - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156132758 chr1:156132760 nonsynonymous SNV 0.977 4 23 hm5C_associated_SNPs_65882 0 0 1 0 1 SEMA4A chr1:156132735 3'AG 156132735 Downstream 26bp
chr17 12883520 12883520 1 + G T LUAD 12883518 + 12883498 12883538 41 CCCCAGCCCCAGCCAGCCGCCTGCAGACCAGAGTCCTCACA CCCCAGCCCCAGCCAGCCGCCTTCAGACCAGAGTCCTCACA < 41bp 0.748218815694203 0.402079209917164 0.13424325 0.29547203 prediction 0.496437631388406 Functional Loss - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12883518 chr17:12883520 nonsynonymous SNV 0.404 0 23 hm5C_associated_SNPs_65884 0 0 0 0 1 ARHGAP44 chr17:12883550 5'GT 12883550 Upstream 31bp
chr5 113831669 113831669 1 + G T LUSC 113831667 + 113831647 113831687 41 TCGAGAAGAGGATTGTTACCCTGGAAACAAAACTAGAGACT TCGAGAAGAGGATTGTTACCCTTGAAACAAAACTAGAGACT < 41bp 0.846001214944666 0.597785672675025 0.58059704 0.28262705 prediction 0.496431084539281 Functional Loss - KCNN2 ENSG00000080709 CDS Human protein_coding chr5:113831667 chr5:113831669 synonymous SNV . 0 23 hm5C_associated_SNPs_65887 0 0 0 0 1 KCNN2 chr5:113831592 3'AG 113831592 Downstream 78bp
chr15 85487876 85487876 1 + G T LUAD 85487874 + 85487854 85487894 41 TCACGGGAGCCTGTGTGTCCCTGGTGAACGCCTGTATGGCA TCACGGGAGCCTGTGTGTCCCTTGTGAACGCCTGTATGGCA < 41bp 0.7482136219039 0.398549876469885 0.1795784 0.04392627 prediction 0.4964272438078 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85487874 chr15:85487876 synonymous SNV . 0 23 hm5C_associated_SNPs_65888 0 0 0 0 2 SLC28A1 chr15:85487797 3'AG 85487797 Downstream 80bp
chr15 85487876 85487876 1 + G T LUAD 85487874 + 85487854 85487894 41 TCACGGGAGCCTGTGTGTCCCTGGTGAACGCCTGTATGGCA TCACGGGAGCCTGTGTGTCCCTTGTGAACGCCTGTATGGCA < 41bp 0.7482136219039 0.398549876469885 0.1795784 0.04392627 prediction 0.4964272438078 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85487874 chr15:85487876 synonymous SNV . 0 23 hm5C_associated_SNPs_65888 0 0 0 0 2 SLC28A1 chr15:85487895 5'GT 85487895 Upstream 20bp
chr10 93740301 93740301 1 + G T UCEC 93740298 + 93740278 93740318 41 TGGAAAGCAGCCAGGAAATTCTGGACCTTATTCACAAGGTA TGGAAAGCAGCCAGGAAATTCTGTACCTTATTCACAAGGTA < 41bp 0.748199976343477 0.376185878111281 0.2591953 0.2040816 prediction 0.496399952686954 Functional Loss - BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93740298 chr10:93740301 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_65891 0 0 1 0 2 BTAF1 chr10:93740211 3'AG 93740211 Downstream 91bp
chr10 93740301 93740301 1 + G T UCEC 93740298 + 93740278 93740318 41 TGGAAAGCAGCCAGGAAATTCTGGACCTTATTCACAAGGTA TGGAAAGCAGCCAGGAAATTCTGTACCTTATTCACAAGGTA < 41bp 0.748199976343477 0.376185878111281 0.2591953 0.2040816 prediction 0.496399952686954 Functional Loss - BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93740298 chr10:93740301 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_65891 0 0 1 0 2 BTAF1 chr10:93740315 5'GT 93740315 Upstream 15bp
chr15 44720011 44720011 1 + C T rs116908763 44720009 + 44719989 44720029 41 ACGCCGCCGCTGCTTCCAATCTCAGTCCTCCTCCTCTTCCA ACGCCGCCGCTGCTTCCAATCTTAGTCCTCCTCCTCTTCCA < 41bp 0.768532249847078 0.520336872111061 0.15984747 0.110975206 prediction 0.496390755472033 Functional Loss - CTDSPL2 ENSG00000137770 UTR5 Human protein_coding chr15:44720009 chr15:44720011 . . 0 23 hm5C_associated_SNPs_65892 0 1 0 0 1 CTDSPL2 chr15:44720091 5'GT 44720091 Upstream 81bp
chr2 36970319 36970319 1 + A T rs112600633 36970315 + 36970295 36970335 41 GTTCATTGTGAAATGTCCAGCAGGATGCCAAGACCCCAAAT GTTCATTGTGAAATGTCCAGCAGGTTGCCAAGACCCCAAAT < 41bp 0.858348334715322 0.610154788162467 0.8232006 0.43305516 prediction 0.49638709310571 Functional Loss - VIT ENSG00000205221 CDS Human protein_coding chr2:36970315 chr2:36970319 synonymous SNV . 0 25 hm5C_associated_SNPs_65893 0 0 0 0 2 VIT chr2:36970243 3'AG 36970243 Downstream 77bp
chr2 36970319 36970319 1 + A T rs112600633 36970315 + 36970295 36970335 41 GTTCATTGTGAAATGTCCAGCAGGATGCCAAGACCCCAAAT GTTCATTGTGAAATGTCCAGCAGGTTGCCAAGACCCCAAAT < 41bp 0.858348334715322 0.610154788162467 0.8232006 0.43305516 prediction 0.49638709310571 Functional Loss - VIT ENSG00000205221 CDS Human protein_coding chr2:36970315 chr2:36970319 synonymous SNV . 0 25 hm5C_associated_SNPs_65893 0 0 0 0 2 VIT chr2:36970399 5'GT 36970399 Upstream 81bp
chr1 110998915 110998915 1 + C T SKCM 110998913 + 110998893 110998933 41 TGCTTGCCCAACCTGCTGTGCTCCAGGTTCCCGGACGGCAG TGCTTGCCCAACCTGCTGTGCTTCAGGTTCCCGGACGGCAG < 41bp 0.748187121805464 0.47698462769472 0.38122645 0.24131429 prediction 0.496374243610927 Functional Loss - PROK1 ENSG00000143125 CDS Human protein_coding chr1:110998913 chr1:110998915 nonsynonymous SNV 0.972 0 23 hm5C_associated_SNPs_65894 0 0 0 0 1 PROK1 chr1:110998854 3'AG 110998854 Downstream 62bp
chr2 113832802 113832802 1 + G A GBM 113832799 + 113832779 113832819 41 CACCTTCTTCCAGAGCAGCTCAGGCTCCGCCTTCAGGCTTG CACCTTCTTCCAGAGCAGCTCAGACTCCGCCTTCAGGCTTG < 41bp 0.748158431635542 0.499642731996198 0.8899679 0.6564279 prediction 0.496316863271084 Functional Loss - IL1F10 ENSG00000136697 CDS Human protein_coding chr2:113832799 chr2:113832802 nonsynonymous SNV 0.161 3 24 hm5C_associated_SNPs_65898 0 0 0 0 1 IL1F10 chr2:113832729 3'AG 113832729 Downstream 74bp
chr16 57741404 57741404 1 + C T rs114955852 57741402 + 57741382 57741422 41 AGGCAAAGCCGGATGCCCTGCACGGCCTGCGGGTGCACTCC AGGCAAAGCCGGATGCCCTGCATGGCCTGCGGGTGCACTCC < 41bp 0.783847730370291 0.53570705174624 0.39191884 0.4105783 prediction 0.496281357248102 Functional Loss - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57741402 chr16:57741404 synonymous SNV . 0 23 hm5C_associated_SNPs_65902 0 0 0 0 1 DRC7 chr16:57741372 3'AG 57741372 Downstream 33bp
chr5 139202353 139202353 1 + C T READ 139202351 + 139202331 139202371 41 TGTGCCCTGATGCTGCTCAACACGGACCTGCACGGCCACGT TGTGCCCTGATGCTGCTCAACATGGACCTGCACGGCCACGT < 41bp 0.790098136752361 0.541963197409198 0.06989679 0.059093416 prediction 0.496269878686325 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139202351 chr5:139202353 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_65904 0 0 0 0 2 PSD2 chr5:139202311 3'AG 139202311 Downstream 43bp
chr5 139202353 139202353 1 + C T READ 139202351 + 139202331 139202371 41 TGTGCCCTGATGCTGCTCAACACGGACCTGCACGGCCACGT TGTGCCCTGATGCTGCTCAACATGGACCTGCACGGCCACGT < 41bp 0.790098136752361 0.541963197409198 0.06989679 0.059093416 prediction 0.496269878686325 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139202351 chr5:139202353 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_65904 0 0 0 0 2 PSD2 chr5:139202369 5'GT 139202369 Upstream 17bp
chr12 58002361 58002361 1 + C T STAD 58002359 + 58002339 58002379 41 ACCACACGGGTGGCCTACCTCCCGGACTGCCCTGAGGGCAA ACCACACGGGTGGCCTACCTCCTGGACTGCCCTGAGGGCAA < 41bp 0.807763908458281 0.559632897967351 0.25220537 0.25691903 prediction 0.49626202098186 Functional Loss - DTX3 ENSG00000178498 CDS Human protein_coding chr12:58002359 chr12:58002361 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_65905 0 0 1 0 1 DTX3 chr12:58002303 3'AG 58002303 Downstream 59bp
chr17 47296924 47296924 1 + G T UCEC 47296921 + 47296901 47296941 41 GGACCTCAGCACGCAGCTGTCAAGAACAGGCACCCTGTCTC GGACCTCAGCACGCAGCTGTCAATAACAGGCACCCTGTCTC < 41bp 0.921688264203623 0.67355806802759 0.46422827 0.06324518 prediction 0.496260392352066 Functional Loss - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47296921 chr17:47296924 nonsynonymous SNV 0.682 3 24 hm5C_associated_SNPs_65906 0 0 0 0 2 ABI3 chr17:47296902 3'AG 47296902 Downstream 23bp
chr17 47296924 47296924 1 + G T UCEC 47296921 + 47296901 47296941 41 GGACCTCAGCACGCAGCTGTCAAGAACAGGCACCCTGTCTC GGACCTCAGCACGCAGCTGTCAATAACAGGCACCCTGTCTC < 41bp 0.921688264203623 0.67355806802759 0.46422827 0.06324518 prediction 0.496260392352066 Functional Loss - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47296921 chr17:47296924 nonsynonymous SNV 0.682 3 24 hm5C_associated_SNPs_65906 0 0 0 0 2 ABI3 chr17:47296987 5'GT 47296987 Upstream 64bp
chr5 35654760 35654760 1 + C T COAD 35654758 + 35654738 35654778 41 CCTTGAAGAAGATGCTTTTGCACGAGAGCAAAGGGAGAAAA CCTTGAAGAAGATGCTTTTGCATGAGAGCAAAGGGAGAAAA < 41bp 0.790270736760697 0.542143552532333 0.2881998 0.2836021 prediction 0.49625436845673 Functional Loss - SPEF2 ENSG00000152582 CDS Human protein_coding chr5:35654758 chr5:35654760 stopgain 0.998 1 23 hm5C_associated_SNPs_65908 0 0 0 0 1 SPEF2 chr5:35654828 5'GT 35654828 Upstream 69bp
chr2 113955395 113955395 1 + C T CESC 113955393 + 113955373 113955413 41 TGGATGAGCCCGTGGGGGTGCACCACTCGCTGGCCACCCCC TGGATGAGCCCGTGGGGGTGCATCACTCGCTGGCCACCCCC < 41bp 0.819237931535746 0.571141715198281 0.39307284 0.46245706 prediction 0.49619243267493 Functional Loss - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113955393 chr2:113955395 synonymous SNV . 0 23 hm5C_associated_SNPs_65910 0 0 1 0 3 PSD4 chr2:113955324 3'AG 113955324 Downstream 72bp
chr2 113955395 113955395 1 + C T CESC 113955393 + 113955373 113955413 41 TGGATGAGCCCGTGGGGGTGCACCACTCGCTGGCCACCCCC TGGATGAGCCCGTGGGGGTGCATCACTCGCTGGCCACCCCC < 41bp 0.819237931535746 0.571141715198281 0.39307284 0.46245706 prediction 0.49619243267493 Functional Loss - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113955393 chr2:113955395 synonymous SNV . 0 23 hm5C_associated_SNPs_65910 0 0 1 0 3 PSD4 chr2:113955327 3'AG 113955327 Downstream 69bp
chr2 113955395 113955395 1 + C T CESC 113955393 + 113955373 113955413 41 TGGATGAGCCCGTGGGGGTGCACCACTCGCTGGCCACCCCC TGGATGAGCCCGTGGGGGTGCATCACTCGCTGGCCACCCCC < 41bp 0.819237931535746 0.571141715198281 0.39307284 0.46245706 prediction 0.49619243267493 Functional Loss - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113955393 chr2:113955395 synonymous SNV . 0 23 hm5C_associated_SNPs_65910 0 0 1 0 3 PSD4 chr2:113955490 5'GT 113955490 Upstream 96bp
chr15 25488618 25488618 1 + G T STAD 25488615 + 25488595 25488635 41 TTGTGTTGGGCCTGCTGTTCCTGGGCCAGTGGCCATCAGCC TTGTGTTGGGCCTGCTGTTCCTGTGCCAGTGGCCATCAGCC < 41bp 0.748092135120404 0.384958592606137 0.6323209 0.2962793 prediction 0.496184270240808 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25488615 chr15:25488618 . . 0 24 hm5C_associated_SNPs_65911 0 0 0 0 2 SNHG14 chr15:25488574 3'AG 25488574 Downstream 45bp
chr15 25488618 25488618 1 + G T STAD 25488615 + 25488595 25488635 41 TTGTGTTGGGCCTGCTGTTCCTGGGCCAGTGGCCATCAGCC TTGTGTTGGGCCTGCTGTTCCTGTGCCAGTGGCCATCAGCC < 41bp 0.748092135120404 0.384958592606137 0.6323209 0.2962793 prediction 0.496184270240808 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25488615 chr15:25488618 . . 0 24 hm5C_associated_SNPs_65911 0 0 0 0 2 SNHG14 chr15:25488704 5'GT 25488704 Upstream 87bp
chr2 120409636 120409636 1 + G T UCEC 120409634 + 120409614 120409654 41 ATGTTGAACTACAAGGACATCAGGAAGGAGAAGTAAGTGGA ATGTTGAACTACAAGGACATCATGAAGGAGAAGTAAGTGGA < 41bp 0.748090943801065 0.423409175001265 0.7929924 0.18468904 prediction 0.49618188760213 Functional Loss - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120409634 chr2:120409636 nonsynonymous SNV 0.908 1 23 hm5C_associated_SNPs_65912 0 0 0 0 2 CFAP221 chr2:120409550 3'AG 120409550 Downstream 87bp
chr2 120409636 120409636 1 + G T UCEC 120409634 + 120409614 120409654 41 ATGTTGAACTACAAGGACATCAGGAAGGAGAAGTAAGTGGA ATGTTGAACTACAAGGACATCATGAAGGAGAAGTAAGTGGA < 41bp 0.748090943801065 0.423409175001265 0.7929924 0.18468904 prediction 0.49618188760213 Functional Loss - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120409634 chr2:120409636 nonsynonymous SNV 0.908 1 23 hm5C_associated_SNPs_65912 0 0 0 0 2 CFAP221 chr2:120409645 5'GT 120409645 Upstream 10bp
chr1 203036920 203036920 1 + G C LUSC 203036916 + 203036896 203036936 41 GAGGAGAGCCAGCATGAGATCAAGGGTAAGCTCGTCAGGCT GAGGAGAGCCAGCATGAGATCAAGCGTAAGCTCGTCAGGCT < 41bp 0.748087519050681 0.465058869652849 0.91992724 0.88831246 prediction 0.496175038101361 Functional Loss - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203036916 chr1:203036920 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_65913 0 0 1 0 2 PPFIA4 chr1:203036823 3'AG 203036823 Downstream 98bp
chr1 203036920 203036920 1 + G C LUSC 203036916 + 203036896 203036936 41 GAGGAGAGCCAGCATGAGATCAAGGGTAAGCTCGTCAGGCT GAGGAGAGCCAGCATGAGATCAAGCGTAAGCTCGTCAGGCT < 41bp 0.748087519050681 0.465058869652849 0.91992724 0.88831246 prediction 0.496175038101361 Functional Loss - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203036916 chr1:203036920 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_65913 0 0 1 0 2 PPFIA4 chr1:203036920 3'AG 203036920 Downstream 1bp
chr8 97797535 97797535 1 + G T UCEC 97797533 + 97797513 97797553 41 ATAGCCATCCTGGGTCTTGGCAGCAGCATTGGGACTCCTCC ATAGCCATCCTGGGTCTTGGCATCAGCATTGGGACTCCTCC < 41bp 0.748083998915412 0.406600638932795 0.8999864 0.20620173 prediction 0.496167997830823 Functional Loss - CPQ ENSG00000104324 CDS Human protein_coding chr8:97797533 chr8:97797535 nonsynonymous SNV 0.904 1 23 hm5C_associated_SNPs_65915 0 0 1 0 1 CPQ chr8:97797558 5'GT 97797558 Upstream 24bp
chr9 137779104 137779104 1 + A C ESCA 137779103 + 137779083 137779123 41 GAAATTGTGCTGTGATGTTTCAGGGAGCTTGGTGGTACAAA GAAATTGTGCTGTGATGTTTCCGGGAGCTTGGTGGTACAAA < 41bp 0.774167725334196 0.526087476169487 0.9189984 0.90920067 prediction 0.496160498329418 Functional Loss - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137779103 chr9:137779104 nonsynonymous SNV 0.011 1 22 hm5C_associated_SNPs_65916 0 0 0 0 1 FCN2 chr9:137779014 3'AG 137779014 Downstream 91bp
chr1 177199237 177199237 1 + G T KIRC 177199234 + 177199214 177199254 41 GCTCAGGAGTATGCTGACTTCATGGAGCGGTACCGCCAGGG GCTCAGGAGTATGCTGACTTCATTGAGCGGTACCGCCAGGG < 41bp 0.748073699277123 0.35047783767385 0.4278165 0.24764577 prediction 0.496147398554246 Functional Loss - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177199234 chr1:177199237 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_65919 0 0 0 0 1 BRINP2 chr1:177199281 5'GT 177199281 Upstream 45bp
chr1 29391662 29391662 1 + G T STAD 29391660 + 29391640 29391680 41 CATCAATGGGCAAATCCCCACAGGAGAAGGAGTGAGTACTT CATCAATGGGCAAATCCCCACATGAGAAGGAGTGAGTACTT < 41bp 0.748073482816313 0.428444233973762 0.41652077 0.061523974 prediction 0.496146965632626 Functional Loss - EPB41 ENSG00000159023 CDS Human protein_coding chr1:29391660 chr1:29391662 stopgain 0.996 0 23 hm5C_associated_SNPs_65920 0 0 0 0 1 EPB41 chr1:29391670 5'GT 29391670 Upstream 9bp
chr2 86716722 86716722 1 + A T ESCA 86716718 + 86716698 86716738 41 TATTGAAGGAAAAGAGAAGCCAGGAGCACTGTGGCACATAT TATTGAAGGAAAAGAGAAGCCAGGTGCACTGTGGCACATAT < 41bp 0.857487522586782 0.609418367169187 0.37579277 0.3950339 prediction 0.496138310835191 Functional Loss - KDM3A ENSG00000115548 CDS Human protein_coding chr2:86716718 chr2:86716722 synonymous SNV . 0 25 hm5C_associated_SNPs_65921 0 0 1 0 2 KDM3A chr2:86716643 3'AG 86716643 Downstream 80bp
chr2 86716722 86716722 1 + A T ESCA 86716718 + 86716698 86716738 41 TATTGAAGGAAAAGAGAAGCCAGGAGCACTGTGGCACATAT TATTGAAGGAAAAGAGAAGCCAGGTGCACTGTGGCACATAT < 41bp 0.857487522586782 0.609418367169187 0.37579277 0.3950339 prediction 0.496138310835191 Functional Loss - KDM3A ENSG00000115548 CDS Human protein_coding chr2:86716718 chr2:86716722 synonymous SNV . 0 25 hm5C_associated_SNPs_65921 0 0 1 0 2 KDM3A chr2:86716782 5'GT 86716782 Upstream 61bp
chr13 43180673 43180673 1 + G T SARC 43180671 + 43180651 43180691 41 TGTCCTCTTGGTACCATGATCGGGGTTGGGCCAAGATCTCC TGTCCTCTTGGTACCATGATCGTGGTTGGGCCAAGATCTCC < 41bp 0.882344368991363 0.634275741962791 0.9482175 0.7390758 prediction 0.496137254057144 Functional Loss - TNFSF11 ENSG00000120659 CDS Human protein_coding chr13:43180671 chr13:43180673 synonymous SNV . 0 23 hm5C_associated_SNPs_65922 0 0 0 0 1 TNFSF11 chr13:43180633 3'AG 43180633 Downstream 41bp
chr8 27528486 27528486 1 + G T GBM 27528484 + 27528464 27528504 41 GTGAAAGGGCCTGTTGGCGGCAGAGGCCCGAAAGGAGACCC GTGAAAGGGCCTGTTGGCGGCATAGGCCCGAAAGGAGACCC < 41bp 0.74806839820221 0.396024589262536 0.8423835 0.34123522 prediction 0.496136796404421 Functional Loss - SCARA3 ENSG00000168077 CDS Human protein_coding chr8:27528484 chr8:27528486 nonsynonymous SNV 0.249 2 23 hm5C_associated_SNPs_65923 0 0 0 0 1 SCARA3 chr8:27528417 3'AG 27528417 Downstream 70bp
chrX 115586549 115586549 1 + G T UCEC 115586547 + 115586527 115586567 41 GAACAGATTCATTGAGGATACAGAAATGATGATTGGAGCAA GAACAGATTCATTGAGGATACATAAATGATGATTGGAGCAA < 41bp 0.748062037739667 0.42338416686045 0.33744967 0.18962818 prediction 0.496124075479334 Functional Loss - SLC6A14 ENSG00000087916 CDS Human other chrX:115586547 chrX:115586549 stopgain 1.000 1 23 hm5C_associated_SNPs_65927 0 0 1 0 2 SLC6A14 chrX:115586523 3'AG 115586523 Downstream 27bp
chrX 115586549 115586549 1 + G T UCEC 115586547 + 115586527 115586567 41 GAACAGATTCATTGAGGATACAGAAATGATGATTGGAGCAA GAACAGATTCATTGAGGATACATAAATGATGATTGGAGCAA < 41bp 0.748062037739667 0.42338416686045 0.33744967 0.18962818 prediction 0.496124075479334 Functional Loss - SLC6A14 ENSG00000087916 CDS Human other chrX:115586547 chrX:115586549 stopgain 1.000 1 23 hm5C_associated_SNPs_65927 0 0 1 0 2 SLC6A14 chrX:115586632 5'GT 115586632 Upstream 84bp
chr16 1549333 1549333 1 + C T GBM 1549331 + 1549311 1549351 41 CTGTTCTTACAGTCCCGGCTCACGGTGAGGACGCCACGGAG CTGTTCTTACAGTCCCGGCTCATGGTGAGGACGCCACGGAG < 41bp 0.749046025932391 0.500987194879409 0.4998212 0.59383017 prediction 0.496117662105964 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1549331 chr16:1549333 nonsynonymous SNV 0.645 2 23 hm5C_associated_SNPs_65928 0 0 1 0 1 TELO2 chr16:1549334 5'GT 1549334 Upstream 2bp
chr12 4870150 4870150 1 + G T UCEC 4870147 + 4870127 4870167 41 TGGCAGTGTGGAGGGAAGGTCGAGATTTTGCCCTGTTCCCG TGGCAGTGTGGAGGGAAGGTCGATATTTTGCCCTGTTCCCG < 41bp 0.920287715071523 0.672229861249176 0.43244487 0.12639344 prediction 0.496115707644694 Functional Loss - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4870147 chr12:4870150 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_65929 0 0 0 0 1 GALNT8 chr12:4870124 3'AG 4870124 Downstream 27bp
chr18 33289661 33289661 1 + G T SARC 33289659 + 33289639 33289679 41 GAAGAGGATAGCCAGGTGCCCAGCATTAGAGACTGCAATGG GAAGAGGATAGCCAGGTGCCCATCATTAGAGACTGCAATGG < 41bp 0.852921301312652 0.604869575744839 0.12997031 0.12548795 prediction 0.496103451135626 Functional Loss - GALNT1 ENSG00000141429 CDS Human protein_coding chr18:33289659 chr18:33289661 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_65931 0 0 1 0 1 GALNT1 chr18:33289588 3'AG 33289588 Downstream 74bp
chr10 112350867 112350867 1 + G C LUAD 112350863 + 112350843 112350883 41 CCTCTTAACAAGTTAGATGTCAGGGATACAGCCTATCCTGA CCTCTTAACAAGTTAGATGTCAGGCATACAGCCTATCCTGA < 41bp 0.808210111074413 0.560163093110673 0.9161595 0.3735193 prediction 0.49609403592748 Functional Loss - SMC3 ENSG00000108055 CDS Human protein_coding chr10:112350863 chr10:112350867 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_65932 0 0 1 0 1 SMC3 chr10:112350890 5'GT 112350890 Upstream 24bp
chr17 18286156 18286156 1 + G C LUAD 18286155 + 18286135 18286175 41 GGCAGGATGCCGCCACCATCCGGAGCCAATACCGAGACCTA GGCAGGATGCCGCCACCATCCCGAGCCAATACCGAGACCTA < 41bp 0.860008250358673 0.611967621172496 0.9125567 0.71577203 prediction 0.496081258372354 Functional Loss - EVPLL ENSG00000214860 CDS Human protein_coding chr17:18286155 chr17:18286156 synonymous SNV . 0 22 hm5C_associated_SNPs_65935 0 0 0 0 2 EVPLL chr17:18286140 3'AG 18286140 Downstream 17bp
chr17 18286156 18286156 1 + G C LUAD 18286155 + 18286135 18286175 41 GGCAGGATGCCGCCACCATCCGGAGCCAATACCGAGACCTA GGCAGGATGCCGCCACCATCCCGAGCCAATACCGAGACCTA < 41bp 0.860008250358673 0.611967621172496 0.9125567 0.71577203 prediction 0.496081258372354 Functional Loss - EVPLL ENSG00000214860 CDS Human protein_coding chr17:18286155 chr17:18286156 synonymous SNV . 0 22 hm5C_associated_SNPs_65935 0 0 0 0 2 EVPLL chr17:18286178 5'GT 18286178 Upstream 23bp
chr1 159803056 159803056 1 + A C UCEC 159803055 + 159803035 159803075 41 CACCCCTCCATGTTCAGCACCAGGGAAGGCCTCCTACAAAG CACCCCTCCATGTTCAGCACCCGGGAAGGCCTCCTACAAAG < 41bp 0.774397254107735 0.526361065464258 0.8888855 0.32353818 prediction 0.496072377286954 Functional Loss - SLAMF8 ENSG00000158714 CDS Human protein_coding chr1:159803055 chr1:159803056 synonymous SNV . 0 22 hm5C_associated_SNPs_65937 0 0 0 0 1 SLAMF8 chr1:159803052 3'AG 159803052 Downstream 5bp
chr22 35478618 35478618 1 + A C LUSC 35478614 + 35478594 35478634 41 CACTACCCAGACGTTCACATCCGCAGCCAGCTGGCAGCCAG CACTACCCAGACGTTCACATCCGCCGCCAGCTGGCAGCCAG < 41bp 0.748020478748591 0.329237680383019 0.15252945 0.07527405 prediction 0.496040957497182 Functional Loss - ISX ENSG00000175329 CDS Human protein_coding chr22:35478614 chr22:35478618 nonsynonymous SNV 0.016 2 25 hm5C_associated_SNPs_65941 0 0 0 0 1 ISX chr22:35478662 5'GT 35478662 Upstream 45bp
chr6 7861758 7861758 1 + C T UCEC 7861756 + 7861736 7861776 41 GGCTGGCTGGAATTTGACATCACGGCCACTAGCAATCTGTG GGCTGGCTGGAATTTGACATCATGGCCACTAGCAATCTGTG < 41bp 0.748018911439917 0.474632102279821 0.33905804 0.1384359 prediction 0.496037822879835 Functional Loss - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7861756 chr6:7861758 nonsynonymous SNV 0.988 4 23 hm5C_associated_SNPs_65942 0 0 0 0 2 BMP6 chr6:7861684 3'AG 7861684 Downstream 75bp
chr6 7861758 7861758 1 + C T UCEC 7861756 + 7861736 7861776 41 GGCTGGCTGGAATTTGACATCACGGCCACTAGCAATCTGTG GGCTGGCTGGAATTTGACATCATGGCCACTAGCAATCTGTG < 41bp 0.748018911439917 0.474632102279821 0.33905804 0.1384359 prediction 0.496037822879835 Functional Loss - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7861756 chr6:7861758 nonsynonymous SNV 0.988 4 23 hm5C_associated_SNPs_65942 0 0 0 0 2 BMP6 chr6:7861832 5'GT 7861832 Upstream 75bp
chr12 54936449 54936449 1 + C T COAD 54936447 + 54936427 54936467 41 AAATGCCTATCGGGAGGTGTCTCGGGCCTTCCACCTAAACT AAATGCCTATCGGGAGGTGTCTTGGGCCTTCCACCTAAACT < 41bp 0.748012793754668 0.48348304532869 0.36490178 0.42836112 prediction 0.496025587509336 Functional Loss - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54936447 chr12:54936449 nonsynonymous SNV 0.909 4 23 hm5C_associated_SNPs_65943 0 0 1 0 1 NCKAP1L chr12:54936359 3'AG 54936359 Downstream 91bp
chr15 75094420 75094420 1 + G T UCEC 75094417 + 75094397 75094437 41 CTTTGGGCGAGTGCCTTATCCAAGAATTGTGAGTATGGGTA CTTTGGGCGAGTGCCTTATCCAATAATTGTGAGTATGGGTA < 41bp 0.748007467525854 0.367288192596319 0.6640841 0.075900465 prediction 0.496014935051708 Functional Loss - CSK ENSG00000103653 CDS Human protein_coding chr15:75094417 chr15:75094420 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_65944 0 0 1 0 2 CSK chr15:75094338 3'AG 75094338 Downstream 83bp
chr15 75094420 75094420 1 + G T UCEC 75094417 + 75094397 75094437 41 CTTTGGGCGAGTGCCTTATCCAAGAATTGTGAGTATGGGTA CTTTGGGCGAGTGCCTTATCCAATAATTGTGAGTATGGGTA < 41bp 0.748007467525854 0.367288192596319 0.6640841 0.075900465 prediction 0.496014935051708 Functional Loss - CSK ENSG00000103653 CDS Human protein_coding chr15:75094417 chr15:75094420 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_65944 0 0 1 0 2 CSK chr15:75094424 5'GT 75094424 Upstream 5bp
chr11 93486866 93486866 1 + G T LUSC 93486863 + 93486843 93486883 41 CTTAGGCATCTGTGGGAAAACTAGAATTGCAGAAGTTGGAG CTTAGGCATCTGTGGGAAAACTATAATTGCAGAAGTTGGAG < 41bp 0.900696943220783 0.652691691046045 0.4975885 0.48584327 prediction 0.496010504349476 Functional Loss - C11orf54 ENSG00000182919 CDS Human protein_coding chr11:93486863 chr11:93486866 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_65945 0 0 1 0 2 C11orf54 chr11:93486848 3'AG 93486848 Downstream 19bp
chr11 93486866 93486866 1 + G T LUSC 93486863 + 93486843 93486883 41 CTTAGGCATCTGTGGGAAAACTAGAATTGCAGAAGTTGGAG CTTAGGCATCTGTGGGAAAACTATAATTGCAGAAGTTGGAG < 41bp 0.900696943220783 0.652691691046045 0.4975885 0.48584327 prediction 0.496010504349476 Functional Loss - C11orf54 ENSG00000182919 CDS Human protein_coding chr11:93486863 chr11:93486866 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_65945 0 0 1 0 2 C11orf54 chr11:93486921 5'GT 93486921 Upstream 56bp
chr18 76754904 76754904 1 + G T LUAD 76754902 + 76754882 76754922 41 TGCTGTTCCTGAGCAGGGAGCGGGGTAAGTGTCCCAGCACT TGCTGTTCCTGAGCAGGGAGCGTGGTAAGTGTCCCAGCACT < 41bp 0.748002294120847 0.395568693359199 0.9342309 0.8864018 prediction 0.496004588241694 Functional Loss - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76754902 chr18:76754904 synonymous SNV . 0 23 hm5C_associated_SNPs_65946 0 0 0 0 1 SALL3 chr18:76754905 5'GT 76754905 Upstream 2bp
chr16 27459912 27459912 1 + G T GBM 27459910 + 27459890 27459930 41 GGAGCTGGGACCCTGGAGCCCAGAGGTGCCCTCCACCCTGG GGAGCTGGGACCCTGGAGCCCATAGGTGCCCTCCACCCTGG < 41bp 0.896705753471522 0.648705293861791 0.902575 0.4852653 prediction 0.496000919219462 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27459910 chr16:27459912 stopgain 0.001 0 23 hm5C_associated_SNPs_65947 0 0 0 0 1 IL21R chr16:27459855 3'AG 27459855 Downstream 58bp
chr19 15222526 15222526 1 + C T UCEC 15222524 + 15222504 15222544 41 GGTGGTACTGGAGGCCATGGCCCGGGACCCCCCAAACAGAG GGTGGTACTGGAGGCCATGGCCTGGGACCCCCCAAACAGAG < 41bp 0.759476018671108 0.511479469041885 0.33356756 0.30029148 prediction 0.495993099258446 Functional Loss - SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15222524 chr19:15222526 nonsynonymous SNV 0.221 2 23 hm5C_associated_SNPs_65948 0 0 0 0 1 SYDE1 chr19:15222443 3'AG 15222443 Downstream 84bp
chr7 127326706 127326706 1 + C T BRCA 127326704 + 127326684 127326724 41 CATCATTGTCCGAGGTCAGCCTCGTGGTGGGCCTCCTCCTG CATCATTGTCCGAGGTCAGCCTTGTGGTGGGCCTCCTCCTG < 41bp 0.747992415336481 0.485936888346015 0.410509 0.5846045 prediction 0.495984830672963 Functional Loss - SND1 ENSG00000197157 CDS Human protein_coding chr7:127326704 chr7:127326706 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_65950 0 0 1 0 1 SND1 chr7:127326667 3'AG 127326667 Downstream 40bp
chr7 127326707 127326707 1 + G T STAD 127326704 + 127326684 127326724 41 CATCATTGTCCGAGGTCAGCCTCGTGGTGGGCCTCCTCCTG CATCATTGTCCGAGGTCAGCCTCTTGGTGGGCCTCCTCCTG < 41bp 0.747992415336481 0.381427040873978 0.410509 0.81603116 prediction 0.495984830672963 Functional Loss - SND1 ENSG00000197157 CDS Human protein_coding chr7:127326704 chr7:127326707 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_65951 0 0 1 0 1 SND1 chr7:127326667 3'AG 127326667 Downstream 41bp
chr2 74040645 74040645 1 + C T UCEC 74040643 + 74040623 74040663 41 TTTACCTGGAACTGCAAATTCTCGGCAGTTCTCTCTTCCTG TTTACCTGGAACTGCAAATTCTTGGCAGTTCTCTCTTCCTG < 41bp 0.809569216877276 0.561580277167039 0.03521478 0.09314075 prediction 0.495977879420473 Functional Loss - C2orf78 ENSG00000187833 CDS Human protein_coding chr2:74040643 chr2:74040645 nonsynonymous SNV 0.930 1 23 hm5C_associated_SNPs_65953 0 0 0 0 1 C2orf78 chr2:74040604 3'AG 74040604 Downstream 42bp
chr1 1387813 1387813 1 + C T LGG 1387811 + 1387791 1387831 41 GACCGGGACAAAGTGACAGCCACGGTAAACATACTCATAAA GACCGGGACAAAGTGACAGCCATGGTAAACATACTCATAAA < 41bp 0.780716017438747 0.532730727119079 0.7992524 0.282936 prediction 0.495970580639337 Functional Loss - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1387811 chr1:1387813 nonsynonymous SNV 0.834 5 23 hm5C_associated_SNPs_65956 0 0 1 0 2 ATAD3C chr1:1387745 3'AG 1387745 Downstream 69bp
chr1 1387813 1387813 1 + C T LGG 1387811 + 1387791 1387831 41 GACCGGGACAAAGTGACAGCCACGGTAAACATACTCATAAA GACCGGGACAAAGTGACAGCCATGGTAAACATACTCATAAA < 41bp 0.780716017438747 0.532730727119079 0.7992524 0.282936 prediction 0.495970580639337 Functional Loss - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1387811 chr1:1387813 nonsynonymous SNV 0.834 5 23 hm5C_associated_SNPs_65956 0 0 1 0 2 ATAD3C chr1:1387814 5'GT 1387814 Upstream 2bp
chr1 3321339 3321339 1 + C T LUAD 3321337 + 3321317 3321357 41 TGGTCATCCACACGGAGGAGCGCGAGTACAAATGCGACCAG TGGTCATCCACACGGAGGAGCGTGAGTACAAATGCGACCAG < 41bp 0.754798676508757 0.506819755441127 0.5320346 0.2784439 prediction 0.49595784213526 Functional Loss - PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3321337 chr1:3321339 synonymous SNV . 0 23 hm5C_associated_SNPs_65957 0 0 0 0 1 PRDM16 chr1:3321303 3'AG 3321303 Downstream 37bp
chrX 99925877 99925877 1 + T C GBM 99925876 + 99925856 99925896 41 CAGGGTATTGACCGAGACCGCTACATGGAACCTGTCACCCC CAGGGTATTGACCGAGACCGCCACATGGAACCTGTCACCCC < 41bp 0.751388771140221 0.503413063080664 0.31632298 0.23084417 prediction 0.495951416119115 Functional Loss - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99925876 chrX:99925877 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_65959 0 0 0 0 1 SRPX2 chrX:99925804 3'AG 99925804 Downstream 74bp
chr8 99961158 99961158 1 + C T LUSC 99961156 + 99961136 99961176 41 TGGAAGAAAGGGTTGGTCCCCTCAGCACCCCCAGCATCCCG TGGAAGAAAGGGTTGGTCCCCTTAGCACCCCCAGCATCCCG < 41bp 0.748926646944967 0.500951405972445 0.04744622 0.03283131 prediction 0.495950481945044 Functional Loss - OSR2 ENSG00000164920 CDS Human protein_coding chr8:99961156 chr8:99961158 nonsynonymous SNV 0.065 1 23 hm5C_associated_SNPs_65960 0 0 0 0 1 OSR2 chr8:99961067 3'AG 99961067 Downstream 92bp
chr20 57876515 57876515 1 + C T SKCM 57876513 + 57876493 57876533 41 TGCTGGCAGGCGCGGCGTGTCCCAGGCCCCCACTGCAGCCA TGCTGGCAGGCGCGGCGTGTCCTAGGCCCCCACTGCAGCCA < 41bp 0.747974466034119 0.493448757849341 0.10906461 0.059212714 prediction 0.495948932068238 Functional Loss - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57876513 chr20:57876515 stopgain 0.003 0 23 hm5C_associated_SNPs_65961 0 0 0 0 1 EDN3 chr20:57876465 3'AG 57876465 Downstream 51bp
chr6 170639566 170639566 1 + G C LUSC 170639562 + 170639542 170639582 41 ACCAGCACCTGCCTAGCTGTCAAGGAGTGGTTTGTGTATCC ACCAGCACCTGCCTAGCTGTCAAGCAGTGGTTTGTGTATCC < 41bp 0.83376386382435 0.585805123782406 0.893473 0.33248734 prediction 0.495917480083889 Functional Loss - FAM120B ENSG00000112584 CDS Human protein_coding chr6:170639562 chr6:170639566 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_65967 0 0 1 0 2 FAM120B chr6:170639537 3'AG 170639537 Downstream 30bp
chr6 170639566 170639566 1 + G C LUSC 170639562 + 170639542 170639582 41 ACCAGCACCTGCCTAGCTGTCAAGGAGTGGTTTGTGTATCC ACCAGCACCTGCCTAGCTGTCAAGCAGTGGTTTGTGTATCC < 41bp 0.83376386382435 0.585805123782406 0.893473 0.33248734 prediction 0.495917480083889 Functional Loss - FAM120B ENSG00000112584 CDS Human protein_coding chr6:170639562 chr6:170639566 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_65967 0 0 1 0 2 FAM120B chr6:170639638 5'GT 170639638 Upstream 73bp
chr9 133507634 133507634 1 + G T THYM 133507632 + 133507612 133507652 41 AGGGCTGGGGCAGCACCTACCAGGCGTGGCAGCAGCCCACA AGGGCTGGGGCAGCACCTACCATGCGTGGCAGCAGCCCACA < 41bp 0.897744854151247 0.649786928737397 0.8772118 0.10455096 prediction 0.495915850827701 Functional Loss - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133507632 chr9:133507634 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_65968 0 0 1 0 2 FUBP3 chr9:133507589 3'AG 133507589 Downstream 46bp
chr9 133507634 133507634 1 + G T THYM 133507632 + 133507612 133507652 41 AGGGCTGGGGCAGCACCTACCAGGCGTGGCAGCAGCCCACA AGGGCTGGGGCAGCACCTACCATGCGTGGCAGCAGCCCACA < 41bp 0.897744854151247 0.649786928737397 0.8772118 0.10455096 prediction 0.495915850827701 Functional Loss - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133507632 chr9:133507634 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_65968 0 0 1 0 2 FUBP3 chr9:133507665 5'GT 133507665 Upstream 32bp
chr22 45221427 45221427 1 + C T UCEC 45221425 + 45221405 45221445 41 GCCTCCCACCAAGACACCACCGCCGCGGCCCCCGCTGCCCA GCCTCCCACCAAGACACCACCGTCGCGGCCCCCGCTGCCCA < 41bp 0.747957390246613 0.483214502543377 0.13638023 0.11699882 prediction 0.495914780493227 Functional Loss - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45221425 chr22:45221427 nonsynonymous SNV 0.188 2 23 hm5C_associated_SNPs_65969 0 0 0 0 2 ARHGAP8;PRR5-ARHGAP8 chr22:45221363 3'AG 45221363 Downstream 65bp
chr22 45221427 45221427 1 + C T UCEC 45221425 + 45221405 45221445 41 GCCTCCCACCAAGACACCACCGCCGCGGCCCCCGCTGCCCA GCCTCCCACCAAGACACCACCGTCGCGGCCCCCGCTGCCCA < 41bp 0.747957390246613 0.483214502543377 0.13638023 0.11699882 prediction 0.495914780493227 Functional Loss - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45221425 chr22:45221427 nonsynonymous SNV 0.188 2 23 hm5C_associated_SNPs_65969 0 0 0 0 2 ARHGAP8;PRR5-ARHGAP8 chr22:45221473 5'GT 45221473 Upstream 47bp
chr11 124955340 124955340 1 + C T COAD 124955338 + 124955318 124955358 41 GCCAAAGCCCTGTCCACGGTCACGGCCATCATTGACGGCAC GCCAAAGCCCTGTCCACGGTCATGGCCATCATTGACGGCAC < 41bp 0.785835359741794 0.537908932529006 0.7197678 0.7999535 prediction 0.495852854425576 Functional Loss - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124955338 chr11:124955340 nonsynonymous SNV 0.879 4 23 hm5C_associated_SNPs_65972 0 0 0 0 2 SLC37A2 chr11:124955291 3'AG 124955291 Downstream 50bp
chr11 124955340 124955340 1 + C T COAD 124955338 + 124955318 124955358 41 GCCAAAGCCCTGTCCACGGTCACGGCCATCATTGACGGCAC GCCAAAGCCCTGTCCACGGTCATGGCCATCATTGACGGCAC < 41bp 0.785835359741794 0.537908932529006 0.7197678 0.7999535 prediction 0.495852854425576 Functional Loss - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124955338 chr11:124955340 nonsynonymous SNV 0.879 4 23 hm5C_associated_SNPs_65972 0 0 0 0 2 SLC37A2 chr11:124955369 5'GT 124955369 Upstream 30bp
chr10 134015484 134015484 1 + C T COAD 134015482 + 134015462 134015502 41 ATGGACGAGAATGAGTTCGTCGCGGTGACCAGTACAAATGC ATGGACGAGAATGAGTTCGTCGTGGTGACCAGTACAAATGC < 41bp 0.784169540738537 0.536243186491778 0.5204026 0.5506312 prediction 0.495852708493519 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134015482 chr10:134015484 nonsynonymous SNV 0.013 4 23 hm5C_associated_SNPs_65973 0 0 1 0 1 DPYSL4 chr10:134015450 3'AG 134015450 Downstream 35bp
chr2 128380826 128380826 1 + G T LUSC 128380823 + 128380803 128380843 41 CATCCAAGTCATCTTGGCCACTGGAGAGAGCCTAACCGTCC CATCCAAGTCATCTTGGCCACTGTAGAGAGCCTAACCGTCC < 41bp 0.747914130628593 0.364566687844347 0.18013129 0.027118772 prediction 0.495828261257185 Functional Loss - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128380823 chr2:128380826 nonsynonymous SNV 0.157 5 24 hm5C_associated_SNPs_65974 0 0 0 0 1 MYO7B chr2:128380777 3'AG 128380777 Downstream 50bp
chr6 112382455 112382455 1 + G C rs78266262 112382451 + 112382431 112382471 41 AAAGGGCTGTATTGTGACTACTCAGTAGACAGGCCTAGGTA AAAGGGCTGTATTGTGACTACTCACTAGACAGGCCTAGGTA < 41bp 0.747913676112636 0.468707297586446 0.1053828 0.08185226 prediction 0.495827352225271 Functional Loss - WISP3 ENSG00000112761 CDS Human protein_coding chr6:112382451 chr6:112382455 nonsynonymous SNV 0.087 0 25 hm5C_associated_SNPs_65976 0 0 0 0 1 WISP3 chr6:112382491 5'GT 112382491 Upstream 37bp
chr11 67164804 67164804 1 + G C UCS 67164800 + 67164780 67164820 41 AAGAGCCCCGGTCCCCACTCCGAGGAGGAAGATGAGGCTGA AAGAGCCCCGGTCCCCACTCCGAGCAGGAAGATGAGGCTGA < 41bp 0.747912211156443 0.469552023469028 0.9053973 0.54179734 prediction 0.495824422312886 Functional Loss - RAD9A ENSG00000172613 CDS Human protein_coding chr11:67164800 chr11:67164804 nonsynonymous SNV 0.974 1 25 hm5C_associated_SNPs_65977 0 0 0 0 1 RAD9A chr11:67164857 5'GT 67164857 Upstream 54bp
chr12 49220635 49220635 1 + C T OV 49220633 + 49220613 49220653 41 TGATAAGCTGGTTCAGTGCCCACCGGTGAGTGCCTGGGTCA TGATAAGCTGGTTCAGTGCCCATCGGTGAGTGCCTGGGTCA < 41bp 0.761864969032914 0.513957846580965 0.18007621 0.15811172 prediction 0.495814244903898 Functional Loss - CACNB3 ENSG00000167535 CDS Human protein_coding chr12:49220633 chr12:49220635 nonsynonymous SNV 0.927 4 23 hm5C_associated_SNPs_65980 0 0 0 0 2 CACNB3 chr12:49220542 3'AG 49220542 Downstream 94bp
chr12 49220635 49220635 1 + C T OV 49220633 + 49220613 49220653 41 TGATAAGCTGGTTCAGTGCCCACCGGTGAGTGCCTGGGTCA TGATAAGCTGGTTCAGTGCCCATCGGTGAGTGCCTGGGTCA < 41bp 0.761864969032914 0.513957846580965 0.18007621 0.15811172 prediction 0.495814244903898 Functional Loss - CACNB3 ENSG00000167535 CDS Human protein_coding chr12:49220633 chr12:49220635 nonsynonymous SNV 0.927 4 23 hm5C_associated_SNPs_65980 0 0 0 0 2 CACNB3 chr12:49220637 5'GT 49220637 Upstream 3bp
chr1 28087051 28087051 1 + A T LUAD 28087047 + 28087027 28087067 41 AAGCAGGCAGCTGCTTTGTCCAAGAGCAAGAAGTCAGAGAA AAGCAGGCAGCTGCTTTGTCCAAGTGCAAGAAGTCAGAGAA < 41bp 0.834644782014595 0.586743127350852 0.8181242 0.71645343 prediction 0.495803309327486 Functional Loss - FAM76A ENSG00000009780 CDS Human protein_coding chr1:28087047 chr1:28087051 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_65981 0 0 1 0 1 FAM76A chr1:28087006 3'AG 28087006 Downstream 46bp
chr19 4941939 4941939 1 + G C BLCA 4941938 + 4941918 4941958 41 AGCAGTGTTCCCAGCGAGGACGAGTGGTGAGTGCGGCCCTG AGCAGTGTTCCCAGCGAGGACCAGTGGTGAGTGCGGCCCTG < 41bp 0.747891694670824 0.442182354915982 0.63034487 0.6186556 prediction 0.495783389341648 Functional Loss - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4941938 chr19:4941939 . 0.566 3 22 hm5C_associated_SNPs_65982 0 0 1 0 2 UHRF1 chr19:4941920 3'AG 4941920 Downstream 20bp
chr19 4941939 4941939 1 + G C BLCA 4941938 + 4941918 4941958 41 AGCAGTGTTCCCAGCGAGGACGAGTGGTGAGTGCGGCCCTG AGCAGTGTTCCCAGCGAGGACCAGTGGTGAGTGCGGCCCTG < 41bp 0.747891694670824 0.442182354915982 0.63034487 0.6186556 prediction 0.495783389341648 Functional Loss - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4941938 chr19:4941939 . 0.566 3 22 hm5C_associated_SNPs_65982 0 0 1 0 2 UHRF1 chr19:4941943 5'GT 4941943 Upstream 5bp
chr19 3530796 3530796 1 + C T COAD 3530794 + 3530774 3530814 41 TGACCTCTGCCTCCAGGTGACGCGGCTCTGTGACCTCTCAG TGACCTCTGCCTCCAGGTGACGTGGCTCTGTGACCTCTCAG < 41bp 0.766429040047382 0.518539880976266 0.26578307 0.26885426 prediction 0.495778318142233 Functional Loss - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3530794 chr19:3530796 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_65983 0 0 1 0 2 FZR1 chr19:3530790 3'AG 3530790 Downstream 7bp
chr19 3530796 3530796 1 + C T COAD 3530794 + 3530774 3530814 41 TGACCTCTGCCTCCAGGTGACGCGGCTCTGTGACCTCTCAG TGACCTCTGCCTCCAGGTGACGTGGCTCTGTGACCTCTCAG < 41bp 0.766429040047382 0.518539880976266 0.26578307 0.26885426 prediction 0.495778318142233 Functional Loss - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3530794 chr19:3530796 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_65983 0 0 1 0 2 FZR1 chr19:3530855 5'GT 3530855 Upstream 60bp
chr18 633308 633308 1 + C T UCEC 633306 + 633286 633326 41 TGTTCCCTGTAGCTCCTGACCACGGAGGCCTGATTTCAAAG TGTTCCCTGTAGCTCCTGACCATGGAGGCCTGATTTCAAAG < 41bp 0.780833453622119 0.532945832867125 0.26089126 0.15366137 prediction 0.495775241509987 Functional Loss - CLUL1 ENSG00000079101 CDS Human protein_coding chr18:633306 chr18:633308 synonymous SNV . 0 23 hm5C_associated_SNPs_65984 0 0 0 0 1 CLUL1 chr18:633298 3'AG 633298 Downstream 11bp
chr10 50030537 50030537 1 + A T LIHC 50030533 + 50030513 50030553 41 GCTGTACAGTGGGATGTTCTCGGCAGACCCCAGGCATATCC GCTGTACAGTGGGATGTTCTCGGCTGACCCCAGGCATATCC < 41bp 0.844484201774886 0.596597320354218 0.9082289 0.8984563 prediction 0.495773762841336 Functional Loss - WDFY4 ENSG00000128815 CDS Human protein_coding chr10:50030533 chr10:50030537 synonymous SNV . 0 25 hm5C_associated_SNPs_65985 0 0 0 0 1 WDFY4 chr10:50030582 5'GT 50030582 Upstream 46bp
chr15 72691170 72691170 1 + G T UCEC 72691167 + 72691147 72691187 41 TGGGTACAGTTTCTGGTGATCAAGAATGGCCTTGAGCTCTA TGGGTACAGTTTCTGGTGATCAATAATGGCCTTGAGCTCTA < 41bp 0.914878129538674 0.666992403605614 0.7264589 0.24196124 prediction 0.49577145186612 Functional Loss - TMEM202 ENSG00000187806 CDS Human protein_coding chr15:72691167 chr15:72691170 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_65986 0 0 0 0 1 TMEM202 chr15:72691249 5'GT 72691249 Upstream 80bp
chr2 108921653 108921653 1 + C T SARC 108921651 + 108921631 108921671 41 TTTGGGGTTCCTGGTTTGACCACGTGAAAGGATGGTGGGAG TTTGGGGTTCCTGGTTTGACCATGTGAAAGGATGGTGGGAG < 41bp 0.747871461884485 0.475071344444638 0.73979366 0.67397404 prediction 0.495742923768971 Functional Loss - SULT1C2 ENSG00000198203 CDS Human protein_coding chr2:108921651 chr2:108921653 synonymous SNV . 0 23 hm5C_associated_SNPs_65989 0 0 0 0 1 SULT1C2 chr2:108921628 3'AG 108921628 Downstream 26bp
chr22 51178322 51178322 1 + G A PRAD 51178319 + 51178299 51178339 41 GTGTGGGCGCTTCATTGGGCCGGGCTGCCTGCCCCACTTTA GTGTGGGCGCTTCATTGGGCCGGACTGCCTGCCCCACTTTA < 41bp 0.774974031503574 0.527106816734499 0.67370975 0.15327358 prediction 0.49573442953815 Functional Loss - ACR ENSG00000100312 CDS Human protein_coding chr22:51178319 chr22:51178322 nonsynonymous SNV 0.469 3 24 hm5C_associated_SNPs_65990 0 0 0 0 1 ACR chr22:51178405 5'GT 51178405 Upstream 84bp
chr12 101381375 101381375 1 + G T LUAD 101381372 + 101381352 101381392 41 TACCTAAGAAGCCAATGAGGCTGGACAAGGAGACACTGCCA TACCTAAGAAGCCAATGAGGCTGTACAAGGAGACACTGCCA < 41bp 0.747865400592872 0.383422728483946 0.23686677 0.113258034 prediction 0.495730801185743 Functional Loss - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101381372 chr12:101381375 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_65992 0 0 0 4 2 ANO4 chr12:101381317 3'AG 101381317 Downstream 59bp
chr12 101381375 101381375 1 + G T LUAD 101381372 + 101381352 101381392 41 TACCTAAGAAGCCAATGAGGCTGGACAAGGAGACACTGCCA TACCTAAGAAGCCAATGAGGCTGTACAAGGAGACACTGCCA < 41bp 0.747865400592872 0.383422728483946 0.23686677 0.113258034 prediction 0.495730801185743 Functional Loss - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101381372 chr12:101381375 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_65992 0 0 0 4 2 ANO4 chr12:101381448 5'GT 101381448 Upstream 74bp
chr5 96100942 96100942 1 + C T BRCA 96100940 + 96100920 96100960 41 TTCAGCAGAGTGACAAAGACCTCGATGATGCCTTGGATAAA TTCAGCAGAGTGACAAAGACCTTGATGATGCCTTGGATAAA < 41bp 0.760709254398004 0.512854377525729 0.138488 0.01704958 prediction 0.49570975374455 Functional Loss - CAST ENSG00000153113 CDS Human protein_coding chr5:96100940 chr5:96100942 synonymous SNV . 0 23 hm5C_associated_SNPs_65996 0 0 1 0 3 CAST chr5:96100925 3'AG 96100925 Downstream 18bp
chr5 96100942 96100942 1 + C T BRCA 96100940 + 96100920 96100960 41 TTCAGCAGAGTGACAAAGACCTCGATGATGCCTTGGATAAA TTCAGCAGAGTGACAAAGACCTTGATGATGCCTTGGATAAA < 41bp 0.760709254398004 0.512854377525729 0.138488 0.01704958 prediction 0.49570975374455 Functional Loss - CAST ENSG00000153113 CDS Human protein_coding chr5:96100940 chr5:96100942 synonymous SNV . 0 23 hm5C_associated_SNPs_65996 0 0 1 0 3 CAST chr5:96100928 3'AG 96100928 Downstream 15bp
chr5 96100942 96100942 1 + C T BRCA 96100940 + 96100920 96100960 41 TTCAGCAGAGTGACAAAGACCTCGATGATGCCTTGGATAAA TTCAGCAGAGTGACAAAGACCTTGATGATGCCTTGGATAAA < 41bp 0.760709254398004 0.512854377525729 0.138488 0.01704958 prediction 0.49570975374455 Functional Loss - CAST ENSG00000153113 CDS Human protein_coding chr5:96100940 chr5:96100942 synonymous SNV . 0 23 hm5C_associated_SNPs_65996 0 0 1 0 3 CAST chr5:96101029 5'GT 96101029 Upstream 88bp
chr18 34802054 34802054 1 + C T SKCM 34802052 + 34802032 34802072 41 CCCAAACCTCAGCGCTATCCCTCCAGAGAAGCTGGGGCCTG CCCAAACCTCAGCGCTATCCCTTCAGAGAAGCTGGGGCCTG < 41bp 0.814654570127609 0.566805227337858 0.9511493 0.32773387 prediction 0.495698685579502 Functional Loss - KIAA1328 ENSG00000150477 CDS Human protein_coding chr18:34802052 chr18:34802054 nonsynonymous SNV 0.945 0 23 hm5C_associated_SNPs_65999 0 0 0 0 1 KIAA1328 chr18:34801980 3'AG 34801980 Downstream 75bp
chr4 95373088 95373088 1 + G C rs147199893 95373084 + 95373064 95373104 41 CGGTGGGGACGGCGCCCTCACCGCGAGTCACTTGTCAGCCC CGGTGGGGACGGCGCCCTCACCGCCAGTCACTTGTCAGCCC < 41bp 0.747847149305027 0.493410521142942 0.9084842 0.8473271 prediction 0.495694298610054 Functional Loss - PDLIM5 ENSG00000163110 UTR5 Human protein_coding chr4:95373084 chr4:95373088 . . 0 25 hm5C_associated_SNPs_66000 0 0 1 0 1 PDLIM5 chr4:95373146 5'GT 95373146 Upstream 59bp
chr19 50902136 50902136 1 + G T UCEC 50902134 + 50902114 50902154 41 TGGCAAGCGGCGGCCAGGCCCAGGGCCCGGGGTGCCCCCAA TGGCAAGCGGCGGCCAGGCCCATGGCCCGGGGTGCCCCCAA < 41bp 0.895737565440905 0.647896691944355 0.901356 0.2145187 prediction 0.4956817469931 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50902134 chr19:50902136 nonsynonymous SNV 0.988 1 23 hm5C_associated_SNPs_66001 0 0 1 0 1 POLD1 chr19:50902105 3'AG 50902105 Downstream 32bp
chr5 34915948 34915948 1 + A C rs2069465 34915944 + 34915924 34915964 41 GCCGCCAGCTAAGCGGCACGCCACAGCAGAGGAGGTGGAGG GCCGCCAGCTAAGCGGCACGCCACCGCAGAGGAGGTGGAGG < 41bp 0.747833600449849 0.363239358714567 0.06382093 0.04905629 prediction 0.495667200899697 Functional Loss - BRIX1 ENSG00000113460 CDS Human protein_coding chr5:34915944 chr5:34915948 synonymous SNV . 0 25 hm5C_associated_SNPs_66004 0 0 1 0 1 BRIX1 chr5:34916002 5'GT 34916002 Upstream 55bp
chr3 189612011 189612011 1 + A T SKCM 189612007 + 189611987 189612027 41 TTGCACAGGATCTGGCAAGTCTGAAAATCCCTGAGCAATTT TTGCACAGGATCTGGCAAGTCTGATAATCCCTGAGCAATTT < 41bp 0.747832396899105 0.438409960052995 0.02438718 0.02241671 prediction 0.49566479379821 Functional Loss - TP63 ENSG00000073282 CDS Human protein_coding chr3:189612007 chr3:189612011 nonsynonymous SNV 0.992 5 25 hm5C_associated_SNPs_66005 0 0 0 0 1 TP63 chr3:189611995 3'AG 189611995 Downstream 17bp
chrX 150348668 150348668 1 + G C LAML 150348664 + 150348644 150348684 41 TTCGTCCTCCCTCTCCTCATCGTGGGTTTCTGCTACGTGAG TTCGTCCTCCCTCTCCTCATCGTGCGTTTCTGCTACGTGAG < 41bp 0.747820499982984 0.449228377431259 0.8971765 0.45060176 prediction 0.495640999965967 Functional Loss - GPR50 ENSG00000102195 CDS Human protein_coding chrX:150348664 chrX:150348668 nonsynonymous SNV 0.616 3 25 hm5C_associated_SNPs_66007 0 0 0 0 1 GPR50 chrX:150348751 5'GT 150348751 Upstream 84bp
chr1 161695827 161695827 1 + C T PAAD 161695825 + 161695805 161695845 41 TGCTCGGGCACCATGCGCATCCCGGTGGAGAGCGCGCCCAT TGCTCGGGCACCATGCGCATCCTGGTGGAGAGCGCGCCCAT < 41bp 0.750120284665561 0.502301320715163 0.6932323 0.21126223 prediction 0.495637927900796 Functional Loss - FCRLB ENSG00000162746 CDS Human protein_coding chr1:161695825 chr1:161695827 nonsynonymous SNV 0.986 2 23 hm5C_associated_SNPs_66008 0 0 0 0 1 FCRLB chr1:161695877 5'GT 161695877 Upstream 51bp
chr19 17653073 17653073 1 + C T LGG 17653071 + 17653051 17653091 41 GCTTTCTGGGGATGCAGAGCCTCGTGTTTGGGGCCCAAGAT GCTTTCTGGGGATGCAGAGCCTTGTGTTTGGGGCCCAAGAT < 41bp 0.747818523049308 0.487979621015049 0.2501657 0.22869489 prediction 0.495637046098616 Functional Loss - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17653071 chr19:17653073 synonymous SNV . 0 23 hm5C_associated_SNPs_66009 0 0 0 0 1 FAM129C chr19:17653103 5'GT 17653103 Upstream 31bp
chr11 64083221 64083221 1 + G C THCA 64083220 + 64083200 64083240 41 CCGAGGCTGTGGAGCAGCTGCGAGAAGCTCTGCACGAGGCC CCGAGGCTGTGGAGCAGCTGCCAGAAGCTCTGCACGAGGCC < 41bp 0.863896672627349 0.616083561126441 0.8795851 0.84954226 prediction 0.495626223001816 Functional Loss - ESRRA ENSG00000173153 CDS Human protein_coding chr11:64083220 chr11:64083221 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_66011 0 0 1 0 1 ESRRA chr11:64083179 3'AG 64083179 Downstream 43bp
chr9 130982481 130982481 1 + G T THCA 130982479 + 130982459 130982499 41 GGCTACATTGGAGTGGTGAACCGGAGCCAGAAGGACATTGA GGCTACATTGGAGTGGTGAACCTGAGCCAGAAGGACATTGA < 41bp 0.747807656023206 0.397526978028682 0.883852 0.28643134 prediction 0.495615312046412 Functional Loss - DNM1 ENSG00000106976 CDS Human protein_coding chr9:130982479 chr9:130982481 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_66012 0 0 1 0 1 DNM1 chr9:130982460 3'AG 130982460 Downstream 22bp
chr2 95941836 95941836 1 + C T COAD 95941834 + 95941814 95941854 41 ACAAGGCGCTGGCCTGTGAGCGCGCGGCCCTCATGGTCTTC ACAAGGCGCTGGCCTGTGAGCGTGCGGCCCTCATGGTCTTC < 41bp 0.747795024583268 0.496928881327152 0.42292035 0.362055 prediction 0.495590049166535 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95941834 chr2:95941836 synonymous SNV . 0 23 hm5C_associated_SNPs_66013 0 0 0 0 1 PROM2 chr2:95941880 5'GT 95941880 Upstream 45bp
chr5 7709484 7709484 1 + G T SARC 7709482 + 7709462 7709502 41 GACAGCATGACCACAGAGAACGGCAAGATCAGCACCACGGT GACAGCATGACCACAGAGAACGTCAAGATCAGCACCACGGT < 41bp 0.747788703143724 0.414601937018819 0.2618202 0.10204393 prediction 0.495577406287449 Functional Loss - ADCY2 ENSG00000078295 CDS Human protein_coding chr5:7709482 chr5:7709484 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_66014 0 0 0 0 1 ADCY2 chr5:7709500 5'GT 7709500 Upstream 17bp
chr4 56762984 56762984 1 + A C UCEC 56762983 + 56762963 56763003 41 TGAAGAATTTGCTGGACTTGCAGAATCAATCTTCAAAAATG TGAAGAATTTGCTGGACTTGCCGAATCAATCTTCAAAAATG < 41bp 0.748449945229094 0.500674130419529 0.3748508 0.15698108 prediction 0.495551629619129 Functional Loss - EXOC1 ENSG00000090989 CDS Human protein_coding chr4:56762983 chr4:56762984 synonymous SNV . 0 22 hm5C_associated_SNPs_66019 0 0 1 0 1 EXOC1 chr4:56763066 5'GT 56763066 Upstream 83bp
chr11 1098731 1098731 1 + G T LIHC 1098729 + 1098709 1098749 41 GCTTCATGCCGGGCTCGAGCCTGGAGTGCGCCAGTCTGCAG GCTTCATGCCGGGCTCGAGCCTTGAGTGCGCCAGTCTGCAG < 41bp 0.881620443601487 0.633850070642316 0.65181696 0.23181039 prediction 0.495540745918342 Functional Loss - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1098729 chr11:1098731 synonymous SNV . 0 23 hm5C_associated_SNPs_66020 0 0 0 0 2 MUC2 chr11:1098641 3'AG 1098641 Downstream 91bp
chr11 1098731 1098731 1 + G T LIHC 1098729 + 1098709 1098749 41 GCTTCATGCCGGGCTCGAGCCTGGAGTGCGCCAGTCTGCAG GCTTCATGCCGGGCTCGAGCCTTGAGTGCGCCAGTCTGCAG < 41bp 0.881620443601487 0.633850070642316 0.65181696 0.23181039 prediction 0.495540745918342 Functional Loss - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1098729 chr11:1098731 synonymous SNV . 0 23 hm5C_associated_SNPs_66020 0 0 0 0 2 MUC2 chr11:1098819 5'GT 1098819 Upstream 89bp
chr12 56481413 56481413 1 + A T HNSC 56481409 + 56481389 56481429 41 GCGATGCTGGGGTCCTGGATCAGAAGACTGCCAGACATGTG GCGATGCTGGGGTCCTGGATCAGATGACTGCCAGACATGTG < 41bp 0.747764519061473 0.446803064096566 0.91682017 0.91967535 prediction 0.495529038122947 Functional Loss - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56481409 chr12:56481413 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_66021 0 0 1 0 2 ERBB3 chr12:56481361 3'AG 56481361 Downstream 53bp
chr12 56481413 56481413 1 + A T HNSC 56481409 + 56481389 56481429 41 GCGATGCTGGGGTCCTGGATCAGAAGACTGCCAGACATGTG GCGATGCTGGGGTCCTGGATCAGATGACTGCCAGACATGTG < 41bp 0.747764519061473 0.446803064096566 0.91682017 0.91967535 prediction 0.495529038122947 Functional Loss - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56481409 chr12:56481413 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_66021 0 0 1 0 2 ERBB3 chr12:56481426 5'GT 56481426 Upstream 14bp
chrX 37913577 37913577 1 + G T LUAD 37913575 + 37913555 37913595 41 ACCTGGGCCTAATCTTTGACCGGGGAGACCCTTGTCAGGCT ACCTGGGCCTAATCTTTGACCGTGGAGACCCTTGTCAGGCT < 41bp 0.89163220088716 0.643868302636122 0.9295461 0.56119835 prediction 0.495527796502075 Functional Loss - SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37913575 chrX:37913577 synonymous SNV . 0 23 hm5C_associated_SNPs_66022 0 0 0 0 1 SYTL5 chrX:37913675 5'GT 37913675 Upstream 99bp
chr4 39439523 39439523 1 + G T OV 39439520 + 39439500 39439540 41 ACTACTACAAACAGATCATACGAGAAAATGGTTTTTCTTTA ACTACTACAAACAGATCATACGATAAAATGGTTTTTCTTTA < 41bp 0.747759687578355 0.361591168866893 0.6569366 0.19648108 prediction 0.49551937515671 Functional Loss - KLB ENSG00000134962 CDS Human protein_coding chr4:39439520 chr4:39439523 stopgain 0.997 0 24 hm5C_associated_SNPs_66023 0 0 0 0 1 KLB chr4:39439615 5'GT 39439615 Upstream 93bp
chrX 36091305 36091305 1 + A C TGCT 36091304 + 36091284 36091324 41 CTTGGATGAAAGTGAAACATCAGAGGAAGATCATGGGTCTC CTTGGATGAAAGTGAAACATCCGAGGAAGATCATGGGTCTC < 41bp 0.747756096058183 0.491211829209 0.8920537 0.8349462 prediction 0.495512192116367 Functional Loss - CFAP47 ENSG00000176034 CDS Human other chrX:36091304 chrX:36091305 synonymous SNV . 0 22 hm5C_associated_SNPs_66025 0 0 0 0 1 CFAP47 chrX:36091256 3'AG 36091256 Downstream 50bp
chr11 62556555 62556555 1 + G A UCEC 62556552 + 62556532 62556572 41 CCACCCTGAATGGCTCCTCCCTGGCCTTATCCCGTCCCTCA CCACCCTGAATGGCTCCTCCCTGACCTTATCCCGTCCCTCA < 41bp 0.749835737265947 0.502088396361442 0.06179169 0.02448672 prediction 0.49549468180901 Functional Loss - TMEM179B ENSG00000185475 CDS Human protein_coding chr11:62556552 chr11:62556555 nonsynonymous SNV 0.933 0 24 hm5C_associated_SNPs_66026 0 0 1 0 1 TMEM179B chr11:62556495 3'AG 62556495 Downstream 61bp
chr19 843977 843977 1 + G T UCEC 843975 + 843955 843995 41 AGCAGCACTTCTCGGTGGCTCAGGTGTTTCTGAACAACTAC AGCAGCACTTCTCGGTGGCTCATGTGTTTCTGAACAACTAC < 41bp 0.747743226705017 0.399172709233526 0.9036844 0.23327151 prediction 0.495486453410033 Functional Loss - PRTN3 ENSG00000196415 CDS Human protein_coding chr19:843975 chr19:843977 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_66029 0 0 0 0 2 PRTN3 chr19:843893 3'AG 843893 Downstream 85bp
chr19 843977 843977 1 + G T UCEC 843975 + 843955 843995 41 AGCAGCACTTCTCGGTGGCTCAGGTGTTTCTGAACAACTAC AGCAGCACTTCTCGGTGGCTCATGTGTTTCTGAACAACTAC < 41bp 0.747743226705017 0.399172709233526 0.9036844 0.23327151 prediction 0.495486453410033 Functional Loss - PRTN3 ENSG00000196415 CDS Human protein_coding chr19:843975 chr19:843977 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_66029 0 0 0 0 2 PRTN3 chr19:844034 5'GT 844034 Upstream 58bp
chr11 66325639 66325639 1 + A T UCEC 66325635 + 66325615 66325655 41 AAGGCCTCCCTGCACGAAGCCTGGACCCGGGGTAGGTAGAC AAGGCCTCCCTGCACGAAGCCTGGTCCCGGGGTAGGTAGAC < 41bp 0.747740920094112 0.419969723781288 0.03142008 0.021852225 prediction 0.495481840188223 Functional Loss - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66325635 chr11:66325639 unknown 1.000 0 25 hm5C_associated_SNPs_66032 0 0 0 0 1 ACTN3 chr11:66325645 5'GT 66325645 Upstream 7bp
chr1 183197754 183197754 1 + G T UCEC 183197751 + 183197731 183197771 41 CCAACCCAGCAGACAAGTGTCGAGGTAGGACTCCACCCCAG CCAACCCAGCAGACAAGTGTCGATGTAGGACTCCACCCCAG < 41bp 0.747730056224277 0.410208294180449 0.9171103 0.20569795 prediction 0.495460112448553 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183197751 chr1:183197754 nonsynonymous SNV 0.983 1 24 hm5C_associated_SNPs_66035 0 0 0 0 1 LAMC2 chr1:183197754 5'GT 183197754 Upstream 1bp
chr1 25817986 25817986 1 + T C LIHC 25817985 + 25817965 25818005 41 TGCAAGACAAAACACAGCACCTGGAGAACAGCTTAAGTGCA TGCAAGACAAAACACAGCACCCGGAGAACAGCTTAAGTGCA < 41bp 0.774339737108075 0.526618963067844 0.39526808 0.6742074 prediction 0.495441548080463 Functional Loss - TMEM57 ENSG00000204178 CDS Human protein_coding chr1:25817985 chr1:25817986 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_66038 0 0 1 0 2 TMEM57 chr1:25817901 3'AG 25817901 Downstream 86bp
chr1 25817986 25817986 1 + T C LIHC 25817985 + 25817965 25818005 41 TGCAAGACAAAACACAGCACCTGGAGAACAGCTTAAGTGCA TGCAAGACAAAACACAGCACCCGGAGAACAGCTTAAGTGCA < 41bp 0.774339737108075 0.526618963067844 0.39526808 0.6742074 prediction 0.495441548080463 Functional Loss - TMEM57 ENSG00000204178 CDS Human protein_coding chr1:25817985 chr1:25817986 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_66038 0 0 1 0 2 TMEM57 chr1:25818075 5'GT 25818075 Upstream 90bp
chr17 7318355 7318355 1 + C T LGG 7318353 + 7318333 7318373 41 CTACCAGCCGCTCAAGTACACGCGGCTGCTGGCAGCCAAGG CTACCAGCCGCTCAAGTACACGTGGCTGCTGGCAGCCAAGG < 41bp 0.747707696017109 0.4902166141075 0.28800708 0.3366604 prediction 0.495415392034217 Functional Loss - NLGN2 ENSG00000169992 CDS Human protein_coding chr17:7318353 chr17:7318355 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_66042 0 0 1 0 1 NLGN2 chr17:7318275 3'AG 7318275 Downstream 81bp
chr17 7318356 7318356 1 + G T LUAD 7318353 + 7318333 7318373 41 CTACCAGCCGCTCAAGTACACGCGGCTGCTGGCAGCCAAGG CTACCAGCCGCTCAAGTACACGCTGCTGCTGGCAGCCAAGG < 41bp 0.747707696017109 0.344106915040833 0.28800708 0.06805697 prediction 0.495415392034217 Functional Loss - NLGN2 ENSG00000169992 CDS Human protein_coding chr17:7318353 chr17:7318356 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_66043 0 0 1 0 1 NLGN2 chr17:7318275 3'AG 7318275 Downstream 82bp
chr12 16516792 16516792 1 + G T OV 16516789 + 16516769 16516809 41 GGAATTGGCCTCCTGTATTCCTTGAGTGGTCCCGACCCCTC GGAATTGGCCTCCTGTATTCCTTTAGTGGTCCCGACCCCTC < 41bp 0.747706908746375 0.392827407966592 0.019606948 0.031073153 prediction 0.495413817492749 Functional Loss - MGST1 ENSG00000008394 CDS Human protein_coding chr12:16516789 chr12:16516792 nonsynonymous SNV 0.983 1 24 hm5C_associated_SNPs_66045 0 0 1 0 1 MGST1 chr12:16516729 3'AG 16516729 Downstream 64bp
chr17 40716806 40716806 1 + A C LUAD 40716805 + 40716785 40716825 41 CTGGGAAGAGCTCAATAGCTCAGCGACTGAAGGGCCTGGGG CTGGGAAGAGCTCAATAGCTCCGCGACTGAAGGGCCTGGGG < 41bp 0.747704554162152 0.487292490393682 0.49598458 0.21494296 prediction 0.495409108324304 Functional Loss - COASY ENSG00000068120 CDS Human protein_coding chr17:40716805 chr17:40716806 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_66046 0 0 1 0 1 COASY chr17:40716727 3'AG 40716727 Downstream 80bp
chr3 148563270 148563270 1 + G T BLCA 148563268 + 148563248 148563288 41 CTGTGGACCTGCCGCAGAGTCTGAAAAGGAGACCAAGGCCC CTGTGGACCTGCCGCAGAGTCTTAAAAGGAGACCAAGGCCC < 41bp 0.871066244382723 0.623363117519747 0.028772295 0.033331394 prediction 0.495406253725952 Functional Loss - CPB1 ENSG00000153002 CDS Human protein_coding chr3:148563268 chr3:148563270 stopgain 0.965 1 23 hm5C_associated_SNPs_66047 0 0 0 0 1 CPB1 chr3:148563211 3'AG 148563211 Downstream 60bp
chr12 106704917 106704917 1 + C T UCEC 106704915 + 106704895 106704935 41 GCCAAGCGATTCTGATTCTTCCCGGTTTTCCGAAAGCATGG GCCAAGCGATTCTGATTCTTCCTGGTTTTCCGAAAGCATGG < 41bp 0.747691394265189 0.47698846353729 0.118575364 0.103827775 prediction 0.495382788530378 Functional Loss - TCP11L2 ENSG00000166046 CDS Human protein_coding chr12:106704915 chr12:106704917 nonsynonymous SNV 0.922 2 23 hm5C_associated_SNPs_66050 0 0 1 0 1 TCP11L2 chr12:106704819 3'AG 106704819 Downstream 99bp
chrX 153524337 153524337 1 + C T UCEC 153524335 + 153524315 153524355 41 TCCATCAGGGCCACATGCTCCACGAGCTCCGGGTAAGTTCT TCCATCAGGGCCACATGCTCCATGAGCTCCGGGTAAGTTCT < 41bp 0.75746585927505 0.509779015379418 0.20413527 0.10413754 prediction 0.495373687791264 Functional Loss - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153524335 chrX:153524337 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_66053 0 0 0 0 1 TKTL1 chrX:153524346 5'GT 153524346 Upstream 10bp
chr6 143795941 143795941 1 + C T SKCM 143795939 + 143795919 143795959 41 ATAGGCCTGTGGACTTTCTCCTCGAGACATTACCACTATTA ATAGGCCTGTGGACTTTCTCCTTGAGACATTACCACTATTA < 41bp 0.833609142881471 0.58592330633202 0.905126 0.14482799 prediction 0.495371673098902 Functional Loss - PEX3 ENSG00000034693 CDS Human protein_coding chr6:143795939 chr6:143795941 stopgain 0.978 0 23 hm5C_associated_SNPs_66054 0 0 1 0 2 PEX3 chr6:143795923 3'AG 143795923 Downstream 19bp
chr6 143795941 143795941 1 + C T SKCM 143795939 + 143795919 143795959 41 ATAGGCCTGTGGACTTTCTCCTCGAGACATTACCACTATTA ATAGGCCTGTGGACTTTCTCCTTGAGACATTACCACTATTA < 41bp 0.833609142881471 0.58592330633202 0.905126 0.14482799 prediction 0.495371673098902 Functional Loss - PEX3 ENSG00000034693 CDS Human protein_coding chr6:143795939 chr6:143795941 stopgain 0.978 0 23 hm5C_associated_SNPs_66054 0 0 1 0 2 PEX3 chr6:143795993 5'GT 143795993 Upstream 53bp
chr1 203467895 203467895 1 + C T CESC 203467893 + 203467873 203467913 41 AGAGGACATTCCTCCTCTTCCTCGGAGGACTGCCTACCTGT AGAGGACATTCCTCCTCTTCCTTGGAGGACTGCCTACCTGT < 41bp 0.821309015037025 0.573623269184625 0.09304705 0.07897347 prediction 0.4953714917048 Functional Loss - OPTC ENSG00000188770 CDS Human protein_coding chr1:203467893 chr1:203467895 nonsynonymous SNV 0.130 2 23 hm5C_associated_SNPs_66055 0 0 0 0 2 OPTC chr1:203467809 3'AG 203467809 Downstream 87bp
chr1 203467895 203467895 1 + C T CESC 203467893 + 203467873 203467913 41 AGAGGACATTCCTCCTCTTCCTCGGAGGACTGCCTACCTGT AGAGGACATTCCTCCTCTTCCTTGGAGGACTGCCTACCTGT < 41bp 0.821309015037025 0.573623269184625 0.09304705 0.07897347 prediction 0.4953714917048 Functional Loss - OPTC ENSG00000188770 CDS Human protein_coding chr1:203467893 chr1:203467895 nonsynonymous SNV 0.130 2 23 hm5C_associated_SNPs_66055 0 0 0 0 2 OPTC chr1:203467967 5'GT 203467967 Upstream 73bp
chr19 54967421 54967421 1 + G T COAD 54967419 + 54967399 54967439 41 TCCCCGACGCGCCACTTCCGCAGAAGGTACTGAGGCTCCCG TCCCCGACGCGCCACTTCCGCATAAGGTACTGAGGCTCCCG < 41bp 0.747683630338364 0.392034552311066 0.7786385 0.22665653 prediction 0.495367260676727 Functional Loss - LENG8 ENSG00000167615 CDS Human protein_coding chr19:54967419 chr19:54967421 nonsynonymous SNV 0.867 2 23 hm5C_associated_SNPs_66056 0 0 0 0 1 LENG8 chr19:54967424 5'GT 54967424 Upstream 4bp
chr7 6063002 6063002 1 + C T STAD 6063000 + 6062980 6063020 41 CGAAGGCGAAGGGAACATTGCACGTTTCTTGTTCTCTCTGT CGAAGGCGAAGGGAACATTGCATGTTTCTTGTTCTCTCTGT < 41bp 0.757108339224011 0.509427292549247 0.2654727 0.26741397 prediction 0.495362093349528 Functional Loss - AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6063000 chr7:6063002 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_66058 0 0 1 0 1 AIMP2 chr7:6062934 3'AG 6062934 Downstream 69bp
chr12 550057 550057 1 + C T HNSC 550055 + 550035 550075 41 GTTTACAGATAATGACAAAACGCTATGAGGCATTGGAGCGT GTTTACAGATAATGACAAAACGTTATGAGGCATTGGAGCGT < 41bp 0.747676537828282 0.451229117489066 0.04680705 0.030592203 prediction 0.495353075656564 Functional Loss - CCDC77 ENSG00000120647 CDS Human protein_coding chr12:550055 chr12:550057 synonymous SNV . 0 23 hm5C_associated_SNPs_66060 0 0 1 0 1 CCDC77 chr12:550010 3'AG 550010 Downstream 48bp
chr18 29795101 29795101 1 + T C rs233223 29795100 + 29795080 29795120 41 GTGGGAACAGTGGCTTTGTTCTCTAATGGAACTCAGTTTAG GTGGGAACAGTGGCTTTGTTCCCTAATGGAACTCAGTTTAG < 41bp 0.758358207813018 0.510688470547732 0.910246 0.05721432 prediction 0.495339474530572 Functional Loss - MEP1B ENSG00000141434 CDS Human protein_coding chr18:29795100 chr18:29795101 nonsynonymous SNV 0.828 0 22 hm5C_associated_SNPs_66062 0 0 0 0 1 MEP1B chr18:29795045 3'AG 29795045 Downstream 57bp
chr1 156703202 156703202 1 + G A HNSC 156703199 + 156703179 156703219 41 CCCGCTTCATGGCTCTTGGCCTGGGGTTGATGGTGAAGAGC CCCGCTTCATGGCTCTTGGCCTGAGGTTGATGGTGAAGAGC < 41bp 0.750433986309879 0.502769634212975 0.3289125 0.22099492 prediction 0.495328704193809 Functional Loss - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156703199 chr1:156703202 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_66063 0 0 1 0 1 RRNAD1 chr1:156703169 3'AG 156703169 Downstream 34bp
chr11 60696173 60696173 1 + G T PAAD 60696170 + 60696150 60696190 41 TCTCACAGGCCTCCACCACACGGGCCGAGCTGGCCTACACG TCTCACAGGCCTCCACCACACGGTCCGAGCTGGCCTACACG < 41bp 0.747636052398614 0.344930234380397 0.89335847 0.3177449 prediction 0.495272104797227 Functional Loss - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60696170 chr11:60696173 nonsynonymous SNV 0.293 2 24 hm5C_associated_SNPs_66072 0 0 1 0 1 TMEM132A chr11:60696101 3'AG 60696101 Downstream 73bp
chr1 156347822 156347822 1 + C T SKCM 156347820 + 156347800 156347840 41 TGTGCGGGGGCCGTGCTCATCTCCTTTGGTGCCGTCCTGGG TGTGCGGGGGCCGTGCTCATCTTCTTTGGTGCCGTCCTGGG < 41bp 0.812328131649331 0.564697136439731 0.24371427 0.12885207 prediction 0.4952619904192 Functional Loss - RHBG ENSG00000132677 CDS Human protein_coding chr1:156347820 chr1:156347822 nonsynonymous SNV 0.840 3 23 hm5C_associated_SNPs_66074 0 0 0 0 1 RHBG chr1:156347781 3'AG 156347781 Downstream 42bp
chr11 65735174 65735174 1 + G C rs660118 65735170 + 65735150 65735190 41 AGGAAGGTGGAGCTCCACCGCCGGGGTCCCCGCAGGTGCTG AGGAAGGTGGAGCTCCACCGCCGGCGTCCCCGCAGGTGCTG < 41bp 0.837494190490074 0.589865777507411 0.8260372 0.7724111 prediction 0.495256825965326 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65735170 chr11:65735174 nonsynonymous SNV 0.488 0 25 hm5C_associated_SNPs_66075 0 0 1 0 1 SART1 chr11:65735150 3'AG 65735150 Downstream 25bp
chr14 24526137 24526137 1 + C T CESC 24526135 + 24526115 24526155 41 TGTGCTCAGGGCTCCAGGCACTCGGCCAGACCTTCGGGGCA TGTGCTCAGGGCTCCAGGCACTTGGCCAGACCTTCGGGGCA < 41bp 0.747624009027148 0.484240370898242 0.56263345 0.6425346 prediction 0.495248018054296 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24526135 chr14:24526137 synonymous SNV . 0 23 hm5C_associated_SNPs_66076 0 0 0 0 2 CARMIL3 chr14:24526124 3'AG 24526124 Downstream 14bp
chr14 24526137 24526137 1 + C T CESC 24526135 + 24526115 24526155 41 TGTGCTCAGGGCTCCAGGCACTCGGCCAGACCTTCGGGGCA TGTGCTCAGGGCTCCAGGCACTTGGCCAGACCTTCGGGGCA < 41bp 0.747624009027148 0.484240370898242 0.56263345 0.6425346 prediction 0.495248018054296 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24526135 chr14:24526137 synonymous SNV . 0 23 hm5C_associated_SNPs_66076 0 0 0 0 2 CARMIL3 chr14:24526233 5'GT 24526233 Upstream 97bp
chr16 72131617 72131617 1 + G T UCEC 72131614 + 72131594 72131634 41 GGCACAGCAGCAGATCAGAGCGAGATGGAGGGTCAGAGCGT GGCACAGCAGCAGATCAGAGCGATATGGAGGGTCAGAGCGT < 41bp 0.747616630194869 0.348120241541654 0.8940913 0.6023669 prediction 0.495233260389737 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72131614 chr16:72131617 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_66079 0 0 1 0 2 DHX38 chr16:72131576 3'AG 72131576 Downstream 42bp
chr16 72131617 72131617 1 + G T UCEC 72131614 + 72131594 72131634 41 GGCACAGCAGCAGATCAGAGCGAGATGGAGGGTCAGAGCGT GGCACAGCAGCAGATCAGAGCGATATGGAGGGTCAGAGCGT < 41bp 0.747616630194869 0.348120241541654 0.8940913 0.6023669 prediction 0.495233260389737 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72131614 chr16:72131617 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_66079 0 0 1 0 2 DHX38 chr16:72131680 5'GT 72131680 Upstream 64bp
chrX 128896710 128896710 1 + C T UCEC 128896708 + 128896688 128896728 41 ATGGAGAATTTGGGATCCGTCTCGAAGATGTGGCTCTCGTG ATGGAGAATTTGGGATCCGTCTTGAAGATGTGGCTCTCGTG < 41bp 0.837352770460262 0.589737788638243 0.38246614 0.06865978 prediction 0.495229963644039 Functional Loss - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128896708 chrX:128896710 synonymous SNV . 0 23 hm5C_associated_SNPs_66080 0 0 0 0 2 XPNPEP2 chrX:128896670 3'AG 128896670 Downstream 41bp
chrX 128896710 128896710 1 + C T UCEC 128896708 + 128896688 128896728 41 ATGGAGAATTTGGGATCCGTCTCGAAGATGTGGCTCTCGTG ATGGAGAATTTGGGATCCGTCTTGAAGATGTGGCTCTCGTG < 41bp 0.837352770460262 0.589737788638243 0.38246614 0.06865978 prediction 0.495229963644039 Functional Loss - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128896708 chrX:128896710 synonymous SNV . 0 23 hm5C_associated_SNPs_66080 0 0 0 0 2 XPNPEP2 chrX:128896746 5'GT 128896746 Upstream 37bp
chr20 9417764 9417764 1 + C T BRCA 9417762 + 9417742 9417782 41 TCTGAGCTCAGACCAACCACCACGGCTGCCCTGGCCTCTGG TCTGAGCTCAGACCAACCACCATGGCTGCCCTGGCCTCTGG < 41bp 0.747600292322522 0.484620568591701 0.55815923 0.5738476 prediction 0.495200584645044 Functional Loss - PLCB4 ENSG00000101333 CDS Human protein_coding chr20:9417762 chr20:9417764 nonsynonymous SNV 0.233 3 23 hm5C_associated_SNPs_66083 0 0 0 0 1 PLCB4 chr20:9417799 5'GT 9417799 Upstream 36bp
chr1 184023900 184023900 1 + G T READ 184023898 + 184023878 184023918 41 AGTAAACTGTGTAGGATTACCAGAACTCCAGCTCATCTGCC AGTAAACTGTGTAGGATTACCATAACTCCAGCTCATCTGCC < 41bp 0.878347519496318 0.630755931692016 0.50416094 0.14048907 prediction 0.495183175608604 Functional Loss - TSEN15 ENSG00000198860 CDS Human protein_coding chr1:184023898 chr1:184023900 stopgain 0.999 1 23 hm5C_associated_SNPs_66085 0 0 1 0 2 TSEN15 chr1:184023862 3'AG 184023862 Downstream 39bp
chr1 184023900 184023900 1 + G T READ 184023898 + 184023878 184023918 41 AGTAAACTGTGTAGGATTACCAGAACTCCAGCTCATCTGCC AGTAAACTGTGTAGGATTACCATAACTCCAGCTCATCTGCC < 41bp 0.878347519496318 0.630755931692016 0.50416094 0.14048907 prediction 0.495183175608604 Functional Loss - TSEN15 ENSG00000198860 CDS Human protein_coding chr1:184023898 chr1:184023900 stopgain 0.999 1 23 hm5C_associated_SNPs_66085 0 0 1 0 2 TSEN15 chr1:184023997 5'GT 184023997 Upstream 98bp
chr11 89891357 89891357 1 + C T LUAD 89891355 + 89891335 89891375 41 TGAAGAAGGAGTGGGAATCCCCCGAATACCTGTACATCCCA TGAAGAAGGAGTGGGAATCCCCTGAATACCTGTACATCCCA < 41bp 0.747590827842211 0.468815067211058 0.07150799 0.042393237 prediction 0.495181655684422 Functional Loss - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89891355 chr11:89891357 stopgain 0.977 0 23 hm5C_associated_SNPs_66086 0 0 0 0 2 NAALAD2 chr11:89891313 3'AG 89891313 Downstream 45bp
chr11 89891357 89891357 1 + C T LUAD 89891355 + 89891335 89891375 41 TGAAGAAGGAGTGGGAATCCCCCGAATACCTGTACATCCCA TGAAGAAGGAGTGGGAATCCCCTGAATACCTGTACATCCCA < 41bp 0.747590827842211 0.468815067211058 0.07150799 0.042393237 prediction 0.495181655684422 Functional Loss - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89891355 chr11:89891357 stopgain 0.977 0 23 hm5C_associated_SNPs_66086 0 0 0 0 2 NAALAD2 chr11:89891406 5'GT 89891406 Upstream 50bp
chr12 94072793 94072793 1 + G T LUAD 94072790 + 94072770 94072810 41 GATTCCCTACAGGAGTTTCCCTGGGTCAGGGAGAAGCTGAA GATTCCCTACAGGAGTTTCCCTGTGTCAGGGAGAAGCTGAA < 41bp 0.747587479038638 0.361229833998033 0.37755072 0.18137819 prediction 0.495174958077276 Functional Loss - CRADD ENSG00000169372 CDS Human protein_coding chr12:94072790 chr12:94072793 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_66087 0 0 1 0 1 CRADD chr12:94072848 5'GT 94072848 Upstream 56bp
chr5 231111 231111 1 + T C rs1126417 231110 + 231090 231130 41 AGAGTTTGTTCAGTTCCACCCTACAGGTAGGGCAGGACGCC AGAGTTTGTTCAGTTCCACCCCACAGGTAGGGCAGGACGCC < 41bp 0.747578142726707 0.485043177744123 0.25251156 0.043490678 prediction 0.495156285453414 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:231110 chr5:231111 synonymous SNV . 0 22 hm5C_associated_SNPs_66091 5 0 0 0 1 SDHA chr5:231115 5'GT 231115 Upstream 5bp
chr14 23078673 23078673 1 + G C GBM 23078669 + 23078649 23078689 41 GCCATGATGGAGTCCTTTGGCTGGGCCCGGCGCCCTATGCT GCCATGATGGAGTCCTTTGGCTGGCCCCGGCGCCCTATGCT < 41bp 0.837623226751098 0.590046235100599 0.67175233 0.3311662 prediction 0.495153983300998 Functional Loss - ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23078669 chr14:23078673 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_66092 0 0 0 1 1 ABHD4 chr14:23078630 3'AG 23078630 Downstream 44bp
chr12 57861953 57861953 1 + G T LUAD 57861951 + 57861931 57861971 41 CAGTGGAGCCCAAGAGGGAGCGGGAAGGAGGTCCCATCAGG CAGTGGAGCCCAAGAGGGAGCGTGAAGGAGGTCCCATCAGG < 41bp 0.893126826162608 0.645555138128654 0.6942213 0.25645792 prediction 0.495143376067908 Functional Loss - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57861951 chr12:57861953 synonymous SNV . 0 23 hm5C_associated_SNPs_66093 0 0 0 0 1 GLI1 chr12:57862007 5'GT 57862007 Upstream 55bp
chr2 233321701 233321701 1 + G T GBM 233321698 + 233321678 233321718 41 GCCAACTTCCAGACCATCGGCTTGAGTGCAGCCGCCCGCTT GCCAACTTCCAGACCATCGGCTTTAGTGCAGCCGCCCGCTT < 41bp 0.747571236972347 0.355599750679687 0.29566336 0.18766713 prediction 0.495142473944694 Functional Loss - ALPI ENSG00000163295 CDS Human protein_coding chr2:233321698 chr2:233321701 nonsynonymous SNV 0.105 4 24 hm5C_associated_SNPs_66095 0 0 0 0 2 ALPI chr2:233321609 3'AG 233321609 Downstream 93bp
chr2 233321701 233321701 1 + G T GBM 233321698 + 233321678 233321718 41 GCCAACTTCCAGACCATCGGCTTGAGTGCAGCCGCCCGCTT GCCAACTTCCAGACCATCGGCTTTAGTGCAGCCGCCCGCTT < 41bp 0.747571236972347 0.355599750679687 0.29566336 0.18766713 prediction 0.495142473944694 Functional Loss - ALPI ENSG00000163295 CDS Human protein_coding chr2:233321698 chr2:233321701 nonsynonymous SNV 0.105 4 24 hm5C_associated_SNPs_66095 0 0 0 0 2 ALPI chr2:233321783 5'GT 233321783 Upstream 83bp
chr3 129225380 129225380 1 + G T UCEC 129225377 + 129225357 129225397 41 GGATGCTGTCCATGCAGTGCCTCGATATAGCTCAAGGTGTG GGATGCTGTCCATGCAGTGCCTCTATATAGCTCAAGGTGTG < 41bp 0.747570197219008 0.393641773877026 0.14540932 0.84125066 prediction 0.495140394438016 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129225377 chr3:129225380 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_66096 0 0 1 0 1 IFT122 chr3:129225392 5'GT 129225392 Upstream 13bp
chr12 58112150 58112150 1 + C T SKCM 58112148 + 58112128 58112168 41 TTCCGTCAGACCGAGACCGGCTCCGTTCGGAGGTGAAGGCT TTCCGTCAGACCGAGACCGGCTTCGTTCGGAGGTGAAGGCT < 41bp 0.74756997129787 0.46532907127268 0.052155018 0.040377498 prediction 0.495139942595741 Functional Loss - OS9 ENSG00000135506 CDS Human protein_coding chr12:58112148 chr12:58112150 synonymous SNV . 0 23 hm5C_associated_SNPs_66097 0 0 1 0 1 OS9 chr12:58112159 5'GT 58112159 Upstream 10bp
chr2 150325219 150325219 1 + C T UCEC 150325217 + 150325197 150325237 41 ACAGGAAACAGTATCTCAGTCACCAAACGCTGTGTCCCACT ACAGGAAACAGTATCTCAGTCATCAAACGCTGTGTCCCACT < 41bp 0.747565325707012 0.457561056685829 0.16541126 0.08156651 prediction 0.495130651414023 Functional Loss - LYPD6 ENSG00000187123 CDS Human protein_coding chr2:150325217 chr2:150325219 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_66098 0 0 1 1 2 LYPD6 chr2:150325159 3'AG 150325159 Downstream 61bp
chr2 150325219 150325219 1 + C T UCEC 150325217 + 150325197 150325237 41 ACAGGAAACAGTATCTCAGTCACCAAACGCTGTGTCCCACT ACAGGAAACAGTATCTCAGTCATCAAACGCTGTGTCCCACT < 41bp 0.747565325707012 0.457561056685829 0.16541126 0.08156651 prediction 0.495130651414023 Functional Loss - LYPD6 ENSG00000187123 CDS Human protein_coding chr2:150325217 chr2:150325219 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_66098 0 0 1 1 2 LYPD6 chr2:150325289 5'GT 150325289 Upstream 71bp
chr10 94396973 94396973 1 + G T SARC 94396971 + 94396951 94396991 41 AGACTGATCTTCTAAGTTCACTGGAAATGATTTTATCCCCA AGACTGATCTTCTAAGTTCACTTGAAATGATTTTATCCCCA < 41bp 0.747563116105926 0.436168565791914 0.18964276 0.14804006 prediction 0.495126232211852 Functional Loss - KIF11 ENSG00000138160 CDS Human protein_coding chr10:94396971 chr10:94396973 synonymous SNV . 0 23 hm5C_associated_SNPs_66099 0 0 0 0 2 KIF11 chr10:94396941 3'AG 94396941 Downstream 33bp
chr10 94396973 94396973 1 + G T SARC 94396971 + 94396951 94396991 41 AGACTGATCTTCTAAGTTCACTGGAAATGATTTTATCCCCA AGACTGATCTTCTAAGTTCACTTGAAATGATTTTATCCCCA < 41bp 0.747563116105926 0.436168565791914 0.18964276 0.14804006 prediction 0.495126232211852 Functional Loss - KIF11 ENSG00000138160 CDS Human protein_coding chr10:94396971 chr10:94396973 synonymous SNV . 0 23 hm5C_associated_SNPs_66099 0 0 0 0 2 KIF11 chr10:94397066 5'GT 94397066 Upstream 94bp
chr12 93772141 93772141 1 + G C ESCA 93772140 + 93772120 93772160 41 CAGACGCGGACCTACGACCGCGAGGGCTTCAAGAAGCGGGC CAGACGCGGACCTACGACCGCCAGGGCTTCAAGAAGCGGGC < 41bp 0.747562038091216 0.487104886740894 0.88003993 0.6313468 prediction 0.495124076182433 Functional Loss - NUDT4 ENSG00000173598 CDS Human protein_coding chr12:93772140 chr12:93772141 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_66101 0 0 0 0 1 NUDT4 chr12:93772197 5'GT 93772197 Upstream 57bp
chr5 178505727 178505727 1 + G T COAD 178505725 + 178505705 178505745 41 CAGAAGCATTGCCTCATAGACAGGACATTTTTATAGAAGAA CAGAAGCATTGCCTCATAGACATGACATTTTTATAGAAGAA < 41bp 0.747553860862313 0.439241494933882 0.3938431 0.107676834 prediction 0.495107721724627 Functional Loss - ZNF354C ENSG00000177932 CDS Human protein_coding chr5:178505725 chr5:178505727 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_66103 0 0 0 0 1 ZNF354C chr5:178505684 3'AG 178505684 Downstream 44bp
chr3 47277563 47277563 1 + G T DLBC 47277560 + 47277540 47277580 41 TTCACAGGGACCATGCCTGGCCGGATGCTGCCGCCTGGCTT TTCACAGGGACCATGCCTGGCCGTATGCTGCCGCCTGGCTT < 41bp 0.747553289922597 0.349912611102797 0.5100969 0.2047736 prediction 0.495106579845193 Functional Loss - KIF9 ENSG00000088727 CDS Human protein_coding chr3:47277560 chr3:47277563 synonymous SNV . 0 24 hm5C_associated_SNPs_66104 0 0 0 0 2 KIF9 chr3:47277547 3'AG 47277547 Downstream 17bp
chr3 47277563 47277563 1 + G T DLBC 47277560 + 47277540 47277580 41 TTCACAGGGACCATGCCTGGCCGGATGCTGCCGCCTGGCTT TTCACAGGGACCATGCCTGGCCGTATGCTGCCGCCTGGCTT < 41bp 0.747553289922597 0.349912611102797 0.5100969 0.2047736 prediction 0.495106579845193 Functional Loss - KIF9 ENSG00000088727 CDS Human antisense chr3:47277560 chr3:47277563 synonymous SNV . 0 24 hm5C_associated_SNPs_66104 0 0 0 0 2 KIF9-AS1 chr3:47277649 5'GT 47277649 Upstream 87bp
chr1 230415067 230415067 1 + G C LUAD 230415063 + 230415043 230415083 41 TTGCAGAAATGGGAACAGATCGAGGGCAACTCCAAGCTGAG TTGCAGAAATGGGAACAGATCGAGCGCAACTCCAAGCTGAG < 41bp 0.747547201385774 0.474287929283148 0.92761636 0.8274974 prediction 0.495094402771548 Functional Loss - GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230415063 chr1:230415067 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_66105 0 0 1 0 1 GALNT2 chr1:230415049 3'AG 230415049 Downstream 19bp
chr17 28887175 28887175 1 + G T LUSC 28887173 + 28887153 28887193 41 ACACAGGGTTCCTCATTCAGCTGGCTTCTCCGGGTGCTGAA ACACAGGGTTCCTCATTCAGCTTGCTTCTCCGGGTGCTGAA < 41bp 0.747546257119914 0.394945478846427 0.20174447 0.030733079 prediction 0.495092514239827 Functional Loss - TBC1D29 ENSG00000266733 CDS Human protein_coding chr17:28887173 chr17:28887175 nonsynonymous SNV 0.005 0 23 hm5C_associated_SNPs_66106 0 0 0 0 2 TBC1D29 chr17:28887135 3'AG 28887135 Downstream 41bp
chr17 28887175 28887175 1 + G T LUSC 28887173 + 28887153 28887193 41 ACACAGGGTTCCTCATTCAGCTGGCTTCTCCGGGTGCTGAA ACACAGGGTTCCTCATTCAGCTTGCTTCTCCGGGTGCTGAA < 41bp 0.747546257119914 0.394945478846427 0.20174447 0.030733079 prediction 0.495092514239827 Functional Loss - TBC1D29 ENSG00000266733 CDS Human protein_coding chr17:28887173 chr17:28887175 nonsynonymous SNV 0.005 0 23 hm5C_associated_SNPs_66106 0 0 0 0 2 TBC1D29 chr17:28887200 5'GT 28887200 Upstream 26bp
chr19 36145521 36145521 1 + C T SKCM 36145519 + 36145499 36145539 41 ACCGCTAAAGGAGGCGATATCTCTGTGTGCGAATGGTACCA ACCGCTAAAGGAGGCGATATCTTTGTGTGCGAATGGTACCA < 41bp 0.810304503673635 0.56275904248122 0.1273587 0.061210483 prediction 0.495090922384832 Functional Loss - COX6B1 ENSG00000126267 CDS Human protein_coding chr19:36145519 chr19:36145521 nonsynonymous SNV 0.993 3 23 hm5C_associated_SNPs_66107 0 0 1 0 2 COX6B1 chr19:36145473 3'AG 36145473 Downstream 49bp
chr19 36145521 36145521 1 + C T SKCM 36145519 + 36145499 36145539 41 ACCGCTAAAGGAGGCGATATCTCTGTGTGCGAATGGTACCA ACCGCTAAAGGAGGCGATATCTTTGTGTGCGAATGGTACCA < 41bp 0.810304503673635 0.56275904248122 0.1273587 0.061210483 prediction 0.495090922384832 Functional Loss - COX6B1 ENSG00000126267 CDS Human protein_coding chr19:36145519 chr19:36145521 nonsynonymous SNV 0.993 3 23 hm5C_associated_SNPs_66107 0 0 1 0 2 COX6B1 chr19:36145573 5'GT 36145573 Upstream 53bp
chr11 65154560 65154560 1 + A C rs78688868 65154559 + 65154539 65154579 41 CCGGCCCCGCTGAGCGATCCCACCGAAGCAGCGTGTCCTCC CCGGCCCCGCTGAGCGATCCCCCCGAAGCAGCGTGTCCTCC < 41bp 0.747544089428765 0.492349862944786 0.19655576 0.12532178 prediction 0.49508817885753 Functional Loss - FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65154559 chr11:65154560 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_66108 0 0 1 0 2 FRMD8 chr11:65154508 3'AG 65154508 Downstream 53bp
chr11 65154560 65154560 1 + A C rs78688868 65154559 + 65154539 65154579 41 CCGGCCCCGCTGAGCGATCCCACCGAAGCAGCGTGTCCTCC CCGGCCCCGCTGAGCGATCCCCCCGAAGCAGCGTGTCCTCC < 41bp 0.747544089428765 0.492349862944786 0.19655576 0.12532178 prediction 0.49508817885753 Functional Loss - FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65154559 chr11:65154560 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_66108 0 0 1 0 2 FRMD8 chr11:65154592 5'GT 65154592 Upstream 33bp
chr20 55093181 55093181 1 + C T SKCM 55093179 + 55093159 55093199 41 TTCTGGAAAAGCTGGGAAGCCTCCGTGTGGAGCCACAAAGA TTCTGGAAAAGCTGGGAAGCCTTCGTGTGGAGCCACAAAGA < 41bp 0.807898365542936 0.560356635719158 0.13843957 0.036928326 prediction 0.495083459647557 Functional Loss - RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55093179 chr20:55093181 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_66109 0 0 1 0 1 RTFDC1 chr20:55093143 3'AG 55093143 Downstream 39bp
chr2 219757584 219757584 1 + A T STAD 219757580 + 219757560 219757600 41 AGACGTGCTGGCAGGTGACGCCCGAGTTCCGCACCGTGGGG AGACGTGCTGGCAGGTGACGCCCGTGTTCCGCACCGTGGGG < 41bp 0.84817129422597 0.600634456473484 0.65024894 0.3362204 prediction 0.495073675504971 Functional Loss - WNT10A ENSG00000135925 CDS Human protein_coding chr2:219757580 chr2:219757584 nonsynonymous SNV 0.974 2 25 hm5C_associated_SNPs_66111 0 0 0 0 1 WNT10A chr2:219757496 3'AG 219757496 Downstream 89bp
chrX 2700156 2700156 1 + C T COAD 2700154 + 2700134 2700174 41 ACTACCCACAGCCCGAGAATCCCGACAGCGGTGGAAGTAAG ACTACCCACAGCCCGAGAATCCTGACAGCGGTGGAAGTAAG < 41bp 0.747536732523082 0.477153357160654 0.10909611 0.077971846 prediction 0.495073465046163 Functional Loss - XG ENSG00000124343 CDS Human protein_coding chrX:2700154 chrX:2700156 synonymous SNV . 0 23 hm5C_associated_SNPs_66112 0 0 0 0 2 XG chrX:2700107 3'AG 2700107 Downstream 50bp
chrX 2700156 2700156 1 + C T COAD 2700154 + 2700134 2700174 41 ACTACCCACAGCCCGAGAATCCCGACAGCGGTGGAAGTAAG ACTACCCACAGCCCGAGAATCCTGACAGCGGTGGAAGTAAG < 41bp 0.747536732523082 0.477153357160654 0.10909611 0.077971846 prediction 0.495073465046163 Functional Loss - XG ENSG00000124343 CDS Human protein_coding chrX:2700154 chrX:2700156 synonymous SNV . 0 23 hm5C_associated_SNPs_66112 0 0 0 0 2 XG chrX:2700169 5'GT 2700169 Upstream 14bp
chr8 57358459 57358459 1 - G A SKCM 57358461 - 57358441 57358481 41 TGCTGTTGCTCGGCCCCGGGCTCCTGGCGACCGTGCGGGCC TGCTGTTGCTCGGCCCCGGGCTTCTGGCGACCGTGCGGGCC < 41bp 0.747535302876143 0.478402919084174 0.2801231 0.17692202 prediction 0.495070605752286 Functional Loss - PENK ENSG00000181195 CDS Human protein_coding chr8:57358461 chr8:57358459 synonymous SNV . 0 23 hm5C_associated_SNPs_66113 0 0 0 0 2 PENK chr8:57358375 5'GT 57358375 Upstream 85bp
chr8 57358459 57358459 1 - G A SKCM 57358461 - 57358441 57358481 41 TGCTGTTGCTCGGCCCCGGGCTCCTGGCGACCGTGCGGGCC TGCTGTTGCTCGGCCCCGGGCTTCTGGCGACCGTGCGGGCC < 41bp 0.747535302876143 0.478402919084174 0.2801231 0.17692202 prediction 0.495070605752286 Functional Loss - PENK ENSG00000181195 CDS Human antisense chr8:57358461 chr8:57358459 synonymous SNV . 0 23 hm5C_associated_SNPs_66113 0 0 0 0 2 LOC101929415 chr8:57358515 3'AG 57358515 Downstream 57bp
chr6 131520624 131520624 1 + G T UCEC 131520621 + 131520601 131520641 41 AGACTGCAAATAGGACATTTCAAGAAAAAGGCATCCTGGTA AGACTGCAAATAGGACATTTCAATAAAAAGGCATCCTGGTA < 41bp 0.74753114326128 0.373820700394796 0.11964324 0.043028712 prediction 0.49506228652256 Functional Loss - AKAP7 ENSG00000118507 CDS Human protein_coding chr6:131520621 chr6:131520624 stopgain 1.000 1 24 hm5C_associated_SNPs_66114 0 0 0 0 2 AKAP7 chr6:131520601 3'AG 131520601 Downstream 24bp
chr6 131520624 131520624 1 + G T UCEC 131520621 + 131520601 131520641 41 AGACTGCAAATAGGACATTTCAAGAAAAAGGCATCCTGGTA AGACTGCAAATAGGACATTTCAATAAAAAGGCATCCTGGTA < 41bp 0.74753114326128 0.373820700394796 0.11964324 0.043028712 prediction 0.49506228652256 Functional Loss - AKAP7 ENSG00000118507 CDS Human protein_coding chr6:131520621 chr6:131520624 stopgain 1.000 1 24 hm5C_associated_SNPs_66114 0 0 0 0 2 AKAP7 chr6:131520713 5'GT 131520713 Upstream 90bp
chr2 241500227 241500227 1 - C G rs571769896 241500228 - 241500208 241500248 41 GACGCACAGCGTGACTCCCGCGCGCGCCAGCTGCTCCTCCG GACGCACAGCGTGACTCCCGCCCGCGCCAGCTGCTCCTCCG < 41bp 0.747524378673813 0.4480437921131 0.9018594 0.48187155 prediction 0.495048757347626 Functional Loss - ANKMY1;DUSP28 ENSG00000144504;ENSG00000188542 CDS Human other chr2:241500228 chr2:241500227 synonymous SNV . 0 22 hm5C_associated_SNPs_66117 0 0 0 0 1 ANKMY1;DUSP28 chr2:241500148 5'GT 241500148 Upstream 80bp
chr15 25448251 25448251 1 + G T LUSC 25448249 + 25448229 25448269 41 CACATCAGTGTCCGTCATCCCGGCGTCCAGCCCCTGGTGTG CACATCAGTGTCCGTCATCCCGTCGTCCAGCCCCTGGTGTG < 41bp 0.747520796471747 0.416953753344975 0.90541184 0.25995374 prediction 0.495041592943493 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25448249 chr15:25448251 . . 0 23 hm5C_associated_SNPs_66119 0 0 0 0 2 SNHG14 chr15:25448187 3'AG 25448187 Downstream 65bp
chr15 25448251 25448251 1 + G T LUSC 25448249 + 25448229 25448269 41 CACATCAGTGTCCGTCATCCCGGCGTCCAGCCCCTGGTGTG CACATCAGTGTCCGTCATCCCGTCGTCCAGCCCCTGGTGTG < 41bp 0.747520796471747 0.416953753344975 0.90541184 0.25995374 prediction 0.495041592943493 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25448249 chr15:25448251 . . 0 23 hm5C_associated_SNPs_66119 0 0 0 0 2 SNHG14 chr15:25448317 5'GT 25448317 Upstream 67bp
chr17 61877918 61877918 1 + A C COAD 61877914 + 61877894 61877934 41 AATCTAGAATATGATAGTGACGGAAATCCAATTGCACCTAC AATCTAGAATATGATAGTGACGGACATCCAATTGCACCTAC < 41bp 0.747518498835858 0.364554163250876 0.24849835 0.26610374 prediction 0.495036997671715 Functional Loss - DDX42 ENSG00000198231 CDS Human protein_coding chr17:61877914 chr17:61877918 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_66120 0 0 1 0 2 DDX42 chr17:61877828 3'AG 61877828 Downstream 91bp
chr17 61877918 61877918 1 + A C COAD 61877914 + 61877894 61877934 41 AATCTAGAATATGATAGTGACGGAAATCCAATTGCACCTAC AATCTAGAATATGATAGTGACGGACATCCAATTGCACCTAC < 41bp 0.747518498835858 0.364554163250876 0.24849835 0.26610374 prediction 0.495036997671715 Functional Loss - DDX42 ENSG00000198231 CDS Human protein_coding chr17:61877914 chr17:61877918 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_66120 0 0 1 0 2 DDX42 chr17:61877977 5'GT 61877977 Upstream 60bp
chr2 27659970 27659970 1 + G T LUAD 27659967 + 27659947 27659987 41 ACTCCTTTGGCATGTGTGCACTGGAGGTGAGGGGACTGGAG ACTCCTTTGGCATGTGTGCACTGTAGGTGAGGGGACTGGAG < 41bp 0.916941613687928 0.669426364948067 0.47608784 0.24620354 prediction 0.495030497479723 Functional Loss - NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27659967 chr2:27659970 stopgain 1.000 1 24 hm5C_associated_SNPs_66122 0 0 1 0 2 NRBP1 chr2:27659914 3'AG 27659914 Downstream 57bp
chr2 27659970 27659970 1 + G T LUAD 27659967 + 27659947 27659987 41 ACTCCTTTGGCATGTGTGCACTGGAGGTGAGGGGACTGGAG ACTCCTTTGGCATGTGTGCACTGTAGGTGAGGGGACTGGAG < 41bp 0.916941613687928 0.669426364948067 0.47608784 0.24620354 prediction 0.495030497479723 Functional Loss - NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27659967 chr2:27659970 stopgain 1.000 1 24 hm5C_associated_SNPs_66122 0 0 1 0 2 NRBP1 chr2:27659972 5'GT 27659972 Upstream 3bp
chr20 20180520 20180520 1 + C T SKCM 20180518 + 20180498 20180538 41 GGAAAAGCTTGGCATAAACGCTCCATCAAAGGCGGTCTCCA GGAAAAGCTTGGCATAAACGCTTCATCAAAGGCGGTCTCCA < 41bp 0.747514401409403 0.457045637051761 0.8152773 0.01772809 prediction 0.495028802818805 Functional Loss - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20180518 chr20:20180520 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_66123 0 0 0 0 1 CFAP61 chr20:20180546 5'GT 20180546 Upstream 27bp
chr21 45833849 45833849 1 + C T UCEC 45833847 + 45833827 45833867 41 CCTAAGTGCCCCGAGAGCGACGCGACGCAGCAGAGGCCGGC CCTAAGTGCCCCGAGAGCGACGTGACGCAGCAGAGGCCGGC < 41bp 0.785039885133771 0.537528000136873 0.25431103 0.25080588 prediction 0.495023769993797 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45833847 chr21:45833849 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_66124 0 0 0 0 1 TRPM2 chr21:45833774 3'AG 45833774 Downstream 76bp
chr1 203472822 203472822 1 + C T rs56219555 203472820 + 203472800 203472840 41 CAGCGCCTACTTCTGCCTGCCTCGGCTCCCCATCGGCCGCT CAGCGCCTACTTCTGCCTGCCTTGGCTCCCCATCGGCCGCT < 41bp 0.747510472162402 0.476265160478912 0.076940894 0.015233129 prediction 0.495020944324804 Functional Loss - OPTC ENSG00000188770 CDS Human protein_coding chr1:203472820 chr1:203472822 nonsynonymous SNV 0.984 4 23 hm5C_associated_SNPs_66125 0 0 0 0 1 OPTC chr1:203472873 5'GT 203472873 Upstream 52bp
chr12 52307369 52307369 1 + G T OV 52307367 + 52307347 52307387 41 CCAACCTCCTTCGGAGCAGCCGGGAACAGATGGCCAGCTGG CCAACCTCCTTCGGAGCAGCCGTGAACAGATGGCCAGCTGG < 41bp 0.899917606715825 0.652412970578499 0.91755277 0.25094134 prediction 0.495009272274652 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52307367 chr12:52307369 stopgain 0.001 0 23 hm5C_associated_SNPs_66128 0 0 0 0 1 ACVRL1 chr12:52307343 3'AG 52307343 Downstream 27bp
chr17 4906119 4906119 1 + G A UCEC 4906116 + 4906096 4906136 41 CAGCGCTGCCATGACCAGCTCACGGGGCTGGACTCGGAGAA CAGCGCTGCCATGACCAGCTCACAGGGCTGGACTCGGAGAA < 41bp 0.752127566010722 0.504637462431322 0.58354616 0.12903085 prediction 0.4949802071588 Functional Loss - KIF1C ENSG00000129250 CDS Human protein_coding chr17:4906116 chr17:4906119 synonymous SNV . 0 24 hm5C_associated_SNPs_66131 0 0 1 0 2 KIF1C chr17:4906026 3'AG 4906026 Downstream 94bp
chr17 4906119 4906119 1 + G A UCEC 4906116 + 4906096 4906136 41 CAGCGCTGCCATGACCAGCTCACGGGGCTGGACTCGGAGAA CAGCGCTGCCATGACCAGCTCACAGGGCTGGACTCGGAGAA < 41bp 0.752127566010722 0.504637462431322 0.58354616 0.12903085 prediction 0.4949802071588 Functional Loss - KIF1C ENSG00000129250 CDS Human protein_coding chr17:4906116 chr17:4906119 synonymous SNV . 0 24 hm5C_associated_SNPs_66131 0 0 1 0 2 KIF1C chr17:4906137 5'GT 4906137 Upstream 19bp
chr1 40424431 40424431 1 + C T GBM 40424429 + 40424409 40424449 41 GGCCGAGCCTGGGATGCCATCACAGACCCCCTGGTGGGCCT GGCCGAGCCTGGGATGCCATCATAGACCCCCTGGTGGGCCT < 41bp 0.747489032764917 0.488959232026781 0.3419566 0.31319976 prediction 0.494978065529834 Functional Loss - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40424429 chr1:40424431 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_66132 0 0 1 0 3 MFSD2A chr1:40424334 3'AG 40424334 Downstream 98bp
chr1 40424431 40424431 1 + C T GBM 40424429 + 40424409 40424449 41 GGCCGAGCCTGGGATGCCATCACAGACCCCCTGGTGGGCCT GGCCGAGCCTGGGATGCCATCATAGACCCCCTGGTGGGCCT < 41bp 0.747489032764917 0.488959232026781 0.3419566 0.31319976 prediction 0.494978065529834 Functional Loss - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40424429 chr1:40424431 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_66132 0 0 1 0 3 MFSD2A chr1:40424373 3'AG 40424373 Downstream 59bp
chr1 40424431 40424431 1 + C T GBM 40424429 + 40424409 40424449 41 GGCCGAGCCTGGGATGCCATCACAGACCCCCTGGTGGGCCT GGCCGAGCCTGGGATGCCATCATAGACCCCCTGGTGGGCCT < 41bp 0.747489032764917 0.488959232026781 0.3419566 0.31319976 prediction 0.494978065529834 Functional Loss - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40424429 chr1:40424431 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_66132 0 0 1 0 3 MFSD2A chr1:40424497 5'GT 40424497 Upstream 67bp
chr15 72698952 72698952 1 + A T HNSC 72698948 + 72698928 72698968 41 CTCTTCTTCATGCAGATTATCTCCAATATTCCAGGGCCTTC CTCTTCTTCATGCAGATTATCTCCTATATTCCAGGGCCTTC < 41bp 0.747481416471125 0.404946566408908 0.9577564 0.03499967 prediction 0.494962832942251 Functional Loss - TMEM202 ENSG00000187806 CDS Human protein_coding chr15:72698948 chr15:72698952 nonsynonymous SNV 0.948 1 25 hm5C_associated_SNPs_66135 0 0 0 0 1 TMEM202 chr15:72698943 3'AG 72698943 Downstream 10bp
chr10 99359884 99359884 1 + G T COAD 99359882 + 99359862 99359902 41 GCAGGATTTTCAGGTGTTGGCTGGATCGGCTGGCTTTCTGA GCAGGATTTTCAGGTGTTGGCTTGATCGGCTGGCTTTCTGA < 41bp 0.869168871176723 0.621689399038785 0.87381214 0.69714576 prediction 0.494958944275876 Functional Loss - HOGA1 ENSG00000241935 CDS Human protein_coding chr10:99359882 chr10:99359884 stopgain 0.990 1 23 hm5C_associated_SNPs_66136 0 0 0 0 2 HOGA1 chr10:99359824 3'AG 99359824 Downstream 61bp
chr10 99359884 99359884 1 + G T COAD 99359882 + 99359862 99359902 41 GCAGGATTTTCAGGTGTTGGCTGGATCGGCTGGCTTTCTGA GCAGGATTTTCAGGTGTTGGCTTGATCGGCTGGCTTTCTGA < 41bp 0.869168871176723 0.621689399038785 0.87381214 0.69714576 prediction 0.494958944275876 Functional Loss - HOGA1 ENSG00000241935 CDS Human protein_coding chr10:99359882 chr10:99359884 stopgain 0.990 1 23 hm5C_associated_SNPs_66136 0 0 0 0 2 HOGA1 chr10:99359920 5'GT 99359920 Upstream 37bp
chr16 88052217 88052217 1 + G T ESCA 88052214 + 88052194 88052234 41 GCAGGCTGTGTCCAACCTCTCGGGGCAGGGCAAGCACGGGA GCAGGCTGTGTCCAACCTCTCGGTGCAGGGCAAGCACGGGA < 41bp 0.917477663092834 0.670000329537944 0.94833815 0.6680535 prediction 0.49495466710978 Functional Loss - BANP ENSG00000172530 CDS Human protein_coding chr16:88052214 chr16:88052217 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_66137 0 0 0 0 1 BANP chr16:88052273 5'GT 88052273 Upstream 57bp
chrX 51638243 51638243 1 + C T UCEC 51638241 + 51638221 51638261 41 CCACCTACTAACCAGGCCACCGCAGCTGCTAGTCCCCAGAG CCACCTACTAACCAGGCCACCGTAGCTGCTAGTCCCCAGAG < 41bp 0.747475452529525 0.484472164826237 0.6484094 0.18362942 prediction 0.49495090505905 Functional Loss - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51638241 chrX:51638243 nonsynonymous SNV 0.929 2 23 hm5C_associated_SNPs_66138 0 0 1 0 1 MAGED1 chrX:51638149 3'AG 51638149 Downstream 95bp
chr10 99211611 99211611 1 + C T UCEC 99211609 + 99211589 99211629 41 TCCTTTGGGGGCAGTGACACCGCTGTTGATGCTGCCTTTGA TCCTTTGGGGGCAGTGACACCGTTGTTGATGCTGCCTTTGA < 41bp 0.779309876414587 0.531838065827413 0.6658275 0.56648374 prediction 0.494943621174347 Functional Loss - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99211609 chr10:99211611 nonsynonymous SNV 0.029 0 23 hm5C_associated_SNPs_66139 0 0 1 3 1 ZDHHC16 chr10:99211675 5'GT 99211675 Upstream 65bp
chr12 21392004 21392004 1 + G T LUSC 21392001 + 21391981 21392021 41 ATGCCATGAAGAAAAAATATCAAGAGAAAGATATCAATGCA ATGCCATGAAGAAAAAATATCAATAGAAAGATATCAATGCA < 41bp 0.747470066305275 0.39762976718161 0.38438278 0.05874893 prediction 0.494940132610549 Functional Loss - SLCO1B1 ENSG00000134538 CDS Human protein_coding chr12:21392001 chr12:21392004 stopgain 0.034 0 24 hm5C_associated_SNPs_66142 0 0 0 0 1 SLCO1B1 chr12:21391913 3'AG 21391913 Downstream 92bp
chr12 122361822 122361822 1 + C T UCEC 122361820 + 122361800 122361840 41 CCAGTCCAAAGCAGGGATCTCCCGGGAGTCACTGGTGTCCA CCAGTCCAAAGCAGGGATCTCCTGGGAGTCACTGGTGTCCA < 41bp 0.747469002115731 0.486484042115956 0.25130644 0.22038901 prediction 0.494938004231462 Functional Loss - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122361820 chr12:122361822 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_66143 0 0 0 0 1 WDR66 chr12:122361896 5'GT 122361896 Upstream 75bp
chr9 131256853 131256853 1 + C T HNSC 131256851 + 131256831 131256871 41 CTCCCTGACATCCTGAAGATCACGGAGGCGAAGCTGGCTGA CTCCCTGACATCCTGAAGATCATGGAGGCGAAGCTGGCTGA < 41bp 0.769542497562169 0.522077954355608 0.82525635 0.56317747 prediction 0.494929086413122 Functional Loss - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131256851 chr9:131256853 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_66144 0 0 1 0 2 ODF2 chr9:131256789 3'AG 131256789 Downstream 65bp
chr9 131256853 131256853 1 + C T HNSC 131256851 + 131256831 131256871 41 CTCCCTGACATCCTGAAGATCACGGAGGCGAAGCTGGCTGA CTCCCTGACATCCTGAAGATCATGGAGGCGAAGCTGGCTGA < 41bp 0.769542497562169 0.522077954355608 0.82525635 0.56317747 prediction 0.494929086413122 Functional Loss - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131256851 chr9:131256853 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_66144 0 0 1 0 2 ODF2 chr9:131256947 5'GT 131256947 Upstream 95bp
chr16 24918068 24918068 1 + T C KIRC 24918067 + 24918047 24918087 41 TCGCGTATCCCAAACTCGTGCTGGAACTCCTGCCCACAGGT TCGCGTATCCCAAACTCGTGCCGGAACTCCTGCCCACAGGT < 41bp 0.751625695304818 0.50416261669301 0.21699828 0.34597063 prediction 0.494926157223617 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24918067 chr16:24918068 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_66145 0 0 0 0 2 SLC5A11 chr16:24917978 3'AG 24917978 Downstream 91bp
chr16 24918068 24918068 1 + T C KIRC 24918067 + 24918047 24918087 41 TCGCGTATCCCAAACTCGTGCTGGAACTCCTGCCCACAGGT TCGCGTATCCCAAACTCGTGCCGGAACTCCTGCCCACAGGT < 41bp 0.751625695304818 0.50416261669301 0.21699828 0.34597063 prediction 0.494926157223617 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24918067 chr16:24918068 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_66145 0 0 0 0 2 SLC5A11 chr16:24918085 5'GT 24918085 Upstream 18bp
chr1 222835427 222835427 1 + C T PAAD 222835425 + 222835405 222835445 41 GGACGGGCCTCTACCTCATCCTCGATGGTCAGCTGAGGCAT GGACGGGCCTCTACCTCATCCTTGATGGTCAGCTGAGGCAT < 41bp 0.835244429182493 0.587786179781989 0.40847132 0.20728272 prediction 0.494916498801007 Functional Loss - MIA3 ENSG00000154305 CDS Human protein_coding chr1:222835425 chr1:222835427 stopgain 0.982 0 23 hm5C_associated_SNPs_66147 0 0 1 0 2 MIA3 chr1:222835398 3'AG 222835398 Downstream 30bp
chr1 222835427 222835427 1 + C T PAAD 222835425 + 222835405 222835445 41 GGACGGGCCTCTACCTCATCCTCGATGGTCAGCTGAGGCAT GGACGGGCCTCTACCTCATCCTTGATGGTCAGCTGAGGCAT < 41bp 0.835244429182493 0.587786179781989 0.40847132 0.20728272 prediction 0.494916498801007 Functional Loss - MIA3 ENSG00000154305 CDS Human protein_coding chr1:222835425 chr1:222835427 stopgain 0.982 0 23 hm5C_associated_SNPs_66147 0 0 1 0 2 MIA3 chr1:222835466 5'GT 222835466 Upstream 40bp
chr8 10557833 10557833 1 + C T UCEC 10557831 + 10557811 10557851 41 CGCCAGATCCAGAACACATTCGCCATCTTGGACCTGAAGCT CGCCAGATCCAGAACACATTCGTCATCTTGGACCTGAAGCT < 41bp 0.813311269948444 0.565856526612852 0.31300732 0.31528154 prediction 0.494909486671184 Functional Loss - C8orf74 ENSG00000171060 CDS Human protein_coding chr8:10557831 chr8:10557833 nonsynonymous SNV 0.028 0 23 hm5C_associated_SNPs_66148 0 0 0 0 1 C8orf74 chr8:10557745 3'AG 10557745 Downstream 89bp
chr14 76905731 76905731 1 + G T LUAD 76905729 + 76905709 76905749 41 GACAGGCACCTGGGCTCCAGCTGCGGCTCCTTCATCAAGAC GACAGGCACCTGGGCTCCAGCTTCGGCTCCTTCATCAAGAC < 41bp 0.747454001822282 0.395899579660145 0.29600567 0.09493911 prediction 0.494908003644565 Functional Loss - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76905729 chr14:76905731 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_66150 0 0 0 0 1 ESRRB chr14:76905684 3'AG 76905684 Downstream 48bp
chr8 24207383 24207383 1 + C T SKCM 24207381 + 24207361 24207401 41 CTGTTCTCTGCTGCAGACTTCTCCATTGTGGTTGGGGTGCT CTGTTCTCTGCTGCAGACTTCTTCATTGTGGTTGGGGTGCT < 41bp 0.747451307375306 0.451612665616032 0.95780075 0.28725332 prediction 0.494902614750612 Functional Loss - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24207381 chr8:24207383 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_66151 0 0 0 0 1 ADAM28 chr8:24207377 3'AG 24207377 Downstream 7bp
chr1 160106377 160106377 1 + G T LUAD 160106374 + 160106354 160106394 41 CCACAGGGATGATCCAGGCACTGGGTGGCTTCTTCACCTAC CCACAGGGATGATCCAGGCACTGTGTGGCTTCTTCACCTAC < 41bp 0.747444535666576 0.34130419357528 0.6290058 0.09468636 prediction 0.494889071333153 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160106374 chr1:160106377 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_66154 0 0 0 0 1 ATP1A2 chr1:160106360 3'AG 160106360 Downstream 18bp
chr3 45048925 45048925 1 + A T SARC 45048921 + 45048901 45048941 41 TGCCTTTGCAGATTGGCTATCGGCATGTGGTGGATGCTACT TGCCTTTGCAGATTGGCTATCGGCTTGTGGTGGATGCTACT < 41bp 0.869016733530818 0.621592378570778 0.9338452 0.89912033 prediction 0.49484870992008 Functional Loss - EXOSC7 ENSG00000075914 CDS Human protein_coding chr3:45048921 chr3:45048925 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_66158 0 0 1 0 1 EXOSC7 chr3:45048912 3'AG 45048912 Downstream 14bp
chr12 48884610 48884610 1 + C T rs61940778 48884608 + 48884588 48884628 41 TTTTCAGCTGCAGGAAGATGCTCGGATTCGAGGTAAAACAG TTTTCAGCTGCAGGAAGATGCTTGGATTCGAGGTAAAACAG < 41bp 0.80307845690783 0.55566695802666 0.3345067 0.14213234 prediction 0.49482299776234 Functional Loss - C12orf54 ENSG00000177627 CDS Human protein_coding chr12:48884608 chr12:48884610 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_66165 0 0 0 0 2 C12orf54 chr12:48884595 3'AG 48884595 Downstream 16bp
chr12 48884610 48884610 1 + C T rs61940778 48884608 + 48884588 48884628 41 TTTTCAGCTGCAGGAAGATGCTCGGATTCGAGGTAAAACAG TTTTCAGCTGCAGGAAGATGCTTGGATTCGAGGTAAAACAG < 41bp 0.80307845690783 0.55566695802666 0.3345067 0.14213234 prediction 0.49482299776234 Functional Loss - C12orf54 ENSG00000177627 CDS Human protein_coding chr12:48884608 chr12:48884610 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_66165 0 0 0 0 2 C12orf54 chr12:48884619 5'GT 48884619 Upstream 10bp
chrX 140985250 140985250 1 + G T LUSC 140985248 + 140985228 140985268 41 TGTGTCCCCGAGGAGGTCATCTGGGAAGTGTTGAGTGCAAT TGTGTCCCCGAGGAGGTCATCTTGGAAGTGTTGAGTGCAAT < 41bp 0.747409157237317 0.400933425841413 0.8831657 0.58668387 prediction 0.494818314474633 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140985248 chrX:140985250 nonsynonymous SNV 0.003 3 23 hm5C_associated_SNPs_66167 0 0 0 0 1 MAGEC3 chrX:140985272 5'GT 140985272 Upstream 23bp
chr11 34152413 34152413 1 + A C LGG 34152412 + 34152392 34152432 41 AGCTAATTCAGCAGCTCCGTCAACAGAGCGCCCAGAGCCAG AGCTAATTCAGCAGCTCCGTCCACAGAGCGCCCAGAGCCAG < 41bp 0.747396096102 0.487877128750614 0.27882716 0.114423215 prediction 0.494792192204 Functional Loss - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34152412 chr11:34152413 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_66170 0 0 1 0 2 NAT10 chr11:34152360 3'AG 34152360 Downstream 54bp
chr11 34152413 34152413 1 + A C LGG 34152412 + 34152392 34152432 41 AGCTAATTCAGCAGCTCCGTCAACAGAGCGCCCAGAGCCAG AGCTAATTCAGCAGCTCCGTCCACAGAGCGCCCAGAGCCAG < 41bp 0.747396096102 0.487877128750614 0.27882716 0.114423215 prediction 0.494792192204 Functional Loss - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34152412 chr11:34152413 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_66170 0 0 1 0 2 NAT10 chr11:34152484 5'GT 34152484 Upstream 72bp
chr6 56857219 56857219 1 + C T HNSC 56857217 + 56857197 56857237 41 GCCTTTCTGCCTGGTGAAAGCTCCAGTGAGGATGAAGAGCC GCCTTTCTGCCTGGTGAAAGCTTCAGTGAGGATGAAGAGCC < 41bp 0.842437259837858 0.595051951897323 0.91376346 0.24636534 prediction 0.494770615881072 Functional Loss - BEND6 ENSG00000151917 CDS Human protein_coding chr6:56857217 chr6:56857219 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_66173 0 0 0 0 1 BEND6 chr6:56857176 3'AG 56857176 Downstream 44bp
chr19 1221302 1221302 1 + G T LUSC 1221299 + 1221279 1221319 41 GGGAAGGGGAGCTACGCCATCCCGGGCGACTGTGGCCCCCC GGGAAGGGGAGCTACGCCATCCCTGGCGACTGTGGCCCCCC < 41bp 0.74738521712016 0.346321136689829 0.4877583 0.23472181 prediction 0.494770434240321 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1221299 chr19:1221302 synonymous SNV . 0 24 hm5C_associated_SNPs_66174 0 0 1 0 2 STK11 chr19:1221212 3'AG 1221212 Downstream 91bp
chr19 1221302 1221302 1 + G T LUSC 1221299 + 1221279 1221319 41 GGGAAGGGGAGCTACGCCATCCCGGGCGACTGTGGCCCCCC GGGAAGGGGAGCTACGCCATCCCTGGCGACTGTGGCCCCCC < 41bp 0.74738521712016 0.346321136689829 0.4877583 0.23472181 prediction 0.494770434240321 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1221299 chr19:1221302 synonymous SNV . 0 24 hm5C_associated_SNPs_66174 0 0 1 0 2 STK11 chr19:1221339 5'GT 1221339 Upstream 38bp
chr2 98349602 98349602 1 + G T BLCA 98349600 + 98349580 98349620 41 CCCTGCAGCTGGTGGAGTATCTGAAGCTGAAGGCGGACGGG CCCTGCAGCTGGTGGAGTATCTTAAGCTGAAGGCGGACGGG < 41bp 0.852797261894385 0.605415806162913 0.753893 0.42114753 prediction 0.494762911462943 Functional Loss - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98349600 chr2:98349602 synonymous SNV . 0 23 hm5C_associated_SNPs_66176 0 0 0 0 2 ZAP70 chr2:98349588 3'AG 98349588 Downstream 15bp
chr2 98349602 98349602 1 + G T BLCA 98349600 + 98349580 98349620 41 CCCTGCAGCTGGTGGAGTATCTGAAGCTGAAGGCGGACGGG CCCTGCAGCTGGTGGAGTATCTTAAGCTGAAGGCGGACGGG < 41bp 0.852797261894385 0.605415806162913 0.753893 0.42114753 prediction 0.494762911462943 Functional Loss - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98349600 chr2:98349602 synonymous SNV . 0 23 hm5C_associated_SNPs_66176 0 0 0 0 2 ZAP70 chr2:98349675 5'GT 98349675 Upstream 74bp
chr16 3077019 3077019 1 + C T UCEC 3077017 + 3076997 3077037 41 CCCTCCCCATCCCAGGAGTGCTCGAGGCCCCACAATGGGCG CCCTCCCCATCCCAGGAGTGCTTGAGGCCCCACAATGGGCG < 41bp 0.813259906104411 0.565881240349313 0.4189493 0.39492524 prediction 0.494757331510197 Functional Loss - THOC6 ENSG00000131652 CDS Human protein_coding chr16:3077017 chr16:3077019 nonsynonymous SNV 0.878 1 23 hm5C_associated_SNPs_66177 0 0 1 0 2 THOC6 chr16:3077012 3'AG 3077012 Downstream 8bp
chr16 3077019 3077019 1 + C T UCEC 3077017 + 3076997 3077037 41 CCCTCCCCATCCCAGGAGTGCTCGAGGCCCCACAATGGGCG CCCTCCCCATCCCAGGAGTGCTTGAGGCCCCACAATGGGCG < 41bp 0.813259906104411 0.565881240349313 0.4189493 0.39492524 prediction 0.494757331510197 Functional Loss - THOC6 ENSG00000131652 CDS Human protein_coding chr16:3077017 chr16:3077019 nonsynonymous SNV 0.878 1 23 hm5C_associated_SNPs_66177 0 0 1 0 2 THOC6 chr16:3077074 5'GT 3077074 Upstream 56bp
chr7 18801889 18801889 1 + G T PAAD 18801887 + 18801867 18801907 41 GACGGACAGAAGCTGGACCCCAGGATACTCCTAGGTCTGTA GACGGACAGAAGCTGGACCCCATGATACTCCTAGGTCTGTA < 41bp 0.747377077807319 0.492780054861811 0.9045393 0.32968476 prediction 0.494754155614638 Functional Loss - HDAC9 ENSG00000048052 CDS Human protein_coding chr7:18801887 chr7:18801889 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_66178 0 0 0 0 1 HDAC9 chr7:18801900 5'GT 18801900 Upstream 12bp
chr17 27066165 27066165 1 + G A UCEC 27066162 + 27066142 27066182 41 AGGTGGCCTGTGGGGCCTCTCACGTGCTGGCCCTGTCCACT AGGTGGCCTGTGGGGCCTCTCACATGCTGGCCCTGTCCACT < 41bp 0.747367478658311 0.497750044158527 0.18092296 0.11018896 prediction 0.494734957316622 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27066162 chr17:27066165 nonsynonymous SNV 0.990 2 24 hm5C_associated_SNPs_66181 0 0 1 0 2 NEK8 chr17:27066102 3'AG 27066102 Downstream 64bp
chr17 27066165 27066165 1 + G A UCEC 27066162 + 27066142 27066182 41 AGGTGGCCTGTGGGGCCTCTCACGTGCTGGCCCTGTCCACT AGGTGGCCTGTGGGGCCTCTCACATGCTGGCCCTGTCCACT < 41bp 0.747367478658311 0.497750044158527 0.18092296 0.11018896 prediction 0.494734957316622 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27066162 chr17:27066165 nonsynonymous SNV 0.990 2 24 hm5C_associated_SNPs_66181 0 0 1 0 2 NEK8 chr17:27066219 5'GT 27066219 Upstream 55bp
chr20 43943151 43943151 1 + A C SKCM 43943150 + 43943130 43943170 41 CCAGTTTCCAGGCAGTCCCCCAGGAGGGGGTGGCACCTACT CCAGTTTCCAGGCAGTCCCCCCGGAGGGGGTGGCACCTACT < 41bp 0.791098659176903 0.543739986647425 0.85401535 0.33059323 prediction 0.494717345058957 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43943150 chr20:43943151 synonymous SNV . 0 22 hm5C_associated_SNPs_66184 0 0 0 0 2 RBPJL chr20:43943053 3'AG 43943053 Downstream 99bp
chr20 43943151 43943151 1 + A C SKCM 43943150 + 43943130 43943170 41 CCAGTTTCCAGGCAGTCCCCCAGGAGGGGGTGGCACCTACT CCAGTTTCCAGGCAGTCCCCCCGGAGGGGGTGGCACCTACT < 41bp 0.791098659176903 0.543739986647425 0.85401535 0.33059323 prediction 0.494717345058957 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43943150 chr20:43943151 synonymous SNV . 0 22 hm5C_associated_SNPs_66184 0 0 0 0 2 RBPJL chr20:43943205 5'GT 43943205 Upstream 55bp
chr10 114059307 114059307 1 + G C LUSC 114059303 + 114059283 114059323 41 CAGACCGGGGGAGTCCTGGTCGTGGAGCTCTCCCTGCGGAG CAGACCGGGGGAGTCCTGGTCGTGCAGCTCTCCCTGCGGAG < 41bp 0.747358595095328 0.455814053362986 0.88475215 0.36922297 prediction 0.494717190190656 Functional Loss - TECTB ENSG00000119913 CDS Human protein_coding chr10:114059303 chr10:114059307 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_66185 0 0 0 0 2 TECTB chr10:114059250 3'AG 114059250 Downstream 58bp
chr10 114059307 114059307 1 + G C LUSC 114059303 + 114059283 114059323 41 CAGACCGGGGGAGTCCTGGTCGTGGAGCTCTCCCTGCGGAG CAGACCGGGGGAGTCCTGGTCGTGCAGCTCTCCCTGCGGAG < 41bp 0.747358595095328 0.455814053362986 0.88475215 0.36922297 prediction 0.494717190190656 Functional Loss - TECTB ENSG00000119913 CDS Human protein_coding chr10:114059303 chr10:114059307 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_66185 0 0 0 0 2 TECTB chr10:114059322 5'GT 114059322 Upstream 16bp
chr11 66272113 66272113 1 + G C LUAD 66272109 + 66272089 66272129 41 AAGTCCACAGGGGATGTGGCCGGAGGGCGGGCCCTGTACGA AAGTCCACAGGGGATGTGGCCGGACGGCGGGCCCTGTACGA < 41bp 0.747356729803009 0.454023757351345 0.91605014 0.8595569 prediction 0.494713459606018 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66272109 chr11:66272113 nonsynonymous SNV 0.483 4 25 hm5C_associated_SNPs_66186 0 0 1 0 1 DPP3 chr11:66272083 3'AG 66272083 Downstream 31bp
chr19 18099263 18099263 1 + C T PAAD 18099261 + 18099241 18099281 41 GCTCGTGGTGGCTGTGGTGGCTCGGAAGCTGGAGCTCACCA GCTCGTGGTGGCTGTGGTGGCTTGGAAGCTGGAGCTCACCA < 41bp 0.784860407636894 0.537509026355497 0.04170996 0.036152333 prediction 0.494702762562792 Functional Loss - KCNN1 ENSG00000105642 CDS Human protein_coding chr19:18099261 chr19:18099263 nonsynonymous SNV 0.978 3 23 hm5C_associated_SNPs_66188 0 0 0 0 2 KCNN1 chr19:18099224 3'AG 18099224 Downstream 40bp
chr19 18099263 18099263 1 + C T PAAD 18099261 + 18099241 18099281 41 GCTCGTGGTGGCTGTGGTGGCTCGGAAGCTGGAGCTCACCA GCTCGTGGTGGCTGTGGTGGCTTGGAAGCTGGAGCTCACCA < 41bp 0.784860407636894 0.537509026355497 0.04170996 0.036152333 prediction 0.494702762562792 Functional Loss - KCNN1 ENSG00000105642 CDS Human protein_coding chr19:18099261 chr19:18099263 nonsynonymous SNV 0.978 3 23 hm5C_associated_SNPs_66188 0 0 0 0 2 KCNN1 chr19:18099334 5'GT 18099334 Upstream 72bp
chr19 19218738 19218738 1 + C T COAD 19218736 + 19218716 19218756 41 TTTCATGTCTTCATCCGCATCTCGAGAGAAGAGGGGCTGAA TTTCATGTCTTCATCCGCATCTTGAGAGAAGAGGGGCTGAA < 41bp 0.839274762444739 0.591932958431683 0.91669613 0.2430962 prediction 0.494683608026111 Functional Loss - SLC25A42 ENSG00000181035 CDS Human protein_coding chr19:19218736 chr19:19218738 nonsynonymous SNV 0.973 1 23 hm5C_associated_SNPs_66190 0 0 1 0 1 SLC25A42 chr19:19218703 3'AG 19218703 Downstream 36bp
chr9 100070351 100070351 1 + G C rs12683119 100070350 + 100070330 100070370 41 CCAGCCAGCGGCCAAGATGTCGTCAGTGGGGAAGGTGACCC CCAGCCAGCGGCCAAGATGTCCTCAGTGGGGAAGGTGACCC < 41bp 0.74733563700565 0.436638229571362 0.33691755 0.15324616 prediction 0.494671274011299 Functional Loss - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100070350 chr9:100070351 synonymous SNV . 0 22 hm5C_associated_SNPs_66191 0 0 0 0 2 CCDC180 chr9:100070265 3'AG 100070265 Downstream 87bp
chr9 100070351 100070351 1 + G C rs12683119 100070350 + 100070330 100070370 41 CCAGCCAGCGGCCAAGATGTCGTCAGTGGGGAAGGTGACCC CCAGCCAGCGGCCAAGATGTCCTCAGTGGGGAAGGTGACCC < 41bp 0.74733563700565 0.436638229571362 0.33691755 0.15324616 prediction 0.494671274011299 Functional Loss - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100070350 chr9:100070351 synonymous SNV . 0 22 hm5C_associated_SNPs_66191 0 0 0 0 2 CCDC180 chr9:100070414 5'GT 100070414 Upstream 64bp
chr6 10955434 10955434 1 + A C SKCM 10955430 + 10955410 10955450 41 GGGATCCCCTTTCTCAATAACAGAAGAAAGAGAGTTGCCAG GGGATCCCCTTTCTCAATAACAGACGAAAGAGAGTTGCCAG < 41bp 0.747332911031834 0.346165182726883 0.8701501 0.6664771 prediction 0.494665822063667 Functional Loss - SYCP2L ENSG00000153157 CDS Human protein_coding chr6:10955430 chr6:10955434 nonsynonymous SNV 0.035 0 25 hm5C_associated_SNPs_66192 0 0 0 0 2 SYCP2L chr6:10955349 3'AG 10955349 Downstream 86bp
chr6 10955434 10955434 1 + A C SKCM 10955430 + 10955410 10955450 41 GGGATCCCCTTTCTCAATAACAGAAGAAAGAGAGTTGCCAG GGGATCCCCTTTCTCAATAACAGACGAAAGAGAGTTGCCAG < 41bp 0.747332911031834 0.346165182726883 0.8701501 0.6664771 prediction 0.494665822063667 Functional Loss - SYCP2L ENSG00000153157 CDS Human protein_coding chr6:10955430 chr6:10955434 nonsynonymous SNV 0.035 0 25 hm5C_associated_SNPs_66192 0 0 0 0 2 SYCP2L chr6:10955450 5'GT 10955450 Upstream 17bp
chr12 15134395 15134395 1 + G C rs564659543 15134391 + 15134371 15134411 41 CCTGGAATTGCATGAGCTCGCTCAGTTTGGGATTATCTGAA CCTGGAATTGCATGAGCTCGCTCACTTTGGGATTATCTGAA < 41bp 0.793087688248307 0.545759953949914 0.39635623 0.31477147 prediction 0.494655468596786 Functional Loss - PDE6H ENSG00000139053 CDS Human protein_coding chr12:15134391 chr12:15134395 nonsynonymous SNV 0.985 3 25 hm5C_associated_SNPs_66194 0 0 0 0 1 PDE6H chr12:15134334 3'AG 15134334 Downstream 62bp
chr18 29099832 29099832 1 + G A COAD 29099829 + 29099809 29099849 41 CTCATTTAGTGCGGCAAAAGCGCGCCTGGATCACCGCCCCC CTCATTTAGTGCGGCAAAAGCGCACCTGGATCACCGCCCCC < 41bp 0.76295195482672 0.515627942311957 0.8851248 0.46100387 prediction 0.494648025029526 Functional Loss - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29099829 chr18:29099832 nonsynonymous SNV 0.664 1 24 hm5C_associated_SNPs_66195 0 0 1 0 2 DSG2 chr18:29099766 3'AG 29099766 Downstream 67bp
chr18 29099832 29099832 1 + G A COAD 29099829 + 29099809 29099849 41 CTCATTTAGTGCGGCAAAAGCGCGCCTGGATCACCGCCCCC CTCATTTAGTGCGGCAAAAGCGCACCTGGATCACCGCCCCC < 41bp 0.76295195482672 0.515627942311957 0.8851248 0.46100387 prediction 0.494648025029526 Functional Loss - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29099829 chr18:29099832 nonsynonymous SNV 0.664 1 24 hm5C_associated_SNPs_66195 0 0 1 0 2 DSG2 chr18:29099900 5'GT 29099900 Upstream 69bp
chr10 35842101 35842101 1 + C T BLCA 35842099 + 35842079 35842119 41 TGCCAGATCCTGAAAGACATCACGGTGGAGGACATGTGAGT TGCCAGATCCTGAAAGACATCATGGTGGAGGACATGTGAGT < 41bp 0.809048548422193 0.561725054494982 0.3071368 0.3263738 prediction 0.494646987854421 Functional Loss - CCNY ENSG00000108100 CDS Human protein_coding chr10:35842099 chr10:35842101 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_66196 0 0 1 0 1 CCNY chr10:35842113 5'GT 35842113 Upstream 13bp
chr19 19329795 19329795 1 + G T LUAD 19329792 + 19329772 19329812 41 AGCTGGGGTCTGGGTCAGTGCAGGCTGCGCTGGCGGAGCTG AGCTGGGGTCTGGGTCAGTGCAGTCTGCGCTGGCGGAGCTG < 41bp 0.747321807049231 0.331749303238623 0.6821945 0.41570565 prediction 0.494643614098462 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19329792 chr19:19329795 nonsynonymous SNV 0.461 3 24 hm5C_associated_SNPs_66197 0 0 0 0 1 NCAN chr19:19329724 3'AG 19329724 Downstream 72bp
chr3 186440291 186440291 1 + G T LUSC 186440288 + 186440268 186440308 41 ACGAAATTCTCCGTGGCTACCCAGACCTGCCAGATTACTCC ACGAAATTCTCCGTGGCTACCCATACCTGCCAGATTACTCC < 41bp 0.747321157299453 0.356682784627795 0.4099394 0.20272359 prediction 0.494642314598905 Functional Loss - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186440288 chr3:186440291 nonsynonymous SNV 0.252 4 24 hm5C_associated_SNPs_66198 0 0 0 0 2 KNG1 chr3:186440226 3'AG 186440226 Downstream 66bp
chr3 186440291 186440291 1 + G T LUSC 186440288 + 186440268 186440308 41 ACGAAATTCTCCGTGGCTACCCAGACCTGCCAGATTACTCC ACGAAATTCTCCGTGGCTACCCATACCTGCCAGATTACTCC < 41bp 0.747321157299453 0.356682784627795 0.4099394 0.20272359 prediction 0.494642314598905 Functional Loss - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186440288 chr3:186440291 nonsynonymous SNV 0.252 4 24 hm5C_associated_SNPs_66198 0 0 0 0 2 KNG1 chr3:186440310 5'GT 186440310 Upstream 20bp
chr1 150463934 150463934 1 + C T OV 150463932 + 150463912 150463952 41 CCAGGAACTTACAGCTGCTGCTCGACCCTTCCGGAGGCTAG CCAGGAACTTACAGCTGCTGCTTGACCCTTCCGGAGGCTAG < 41bp 0.747320304112818 0.466162711893533 0.034692258 0.026209265 prediction 0.494640608225636 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150463932 chr1:150463934 stopgain 0.932 0 23 hm5C_associated_SNPs_66199 0 0 1 6 2 TARS2 chr1:150463870 3'AG 150463870 Downstream 65bp
chr1 150463934 150463934 1 + C T OV 150463932 + 150463912 150463952 41 CCAGGAACTTACAGCTGCTGCTCGACCCTTCCGGAGGCTAG CCAGGAACTTACAGCTGCTGCTTGACCCTTCCGGAGGCTAG < 41bp 0.747320304112818 0.466162711893533 0.034692258 0.026209265 prediction 0.494640608225636 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150463932 chr1:150463934 stopgain 0.932 0 23 hm5C_associated_SNPs_66199 0 0 1 6 2 TARS2 chr1:150463987 5'GT 150463987 Upstream 54bp
chr11 86663440 86663440 1 - T G BLCA 86663444 - 86663424 86663464 41 ATCCCCATTGGCCCATGCGGCGGCATGTGTCTTTCAGTCAA ATCCCCATTGGCCCATGCGGCGGCCTGTGTCTTTCAGTCAA < 41bp 0.747315837603527 0.344895102767657 0.24239969 0.15138805 prediction 0.494631675207054 Functional Loss - FZD4 ENSG00000174804 CDS Human protein_coding chr11:86663444 chr11:86663440 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_66201 0 0 1 0 1 FZD4 chr11:86663512 3'AG 86663512 Downstream 73bp
chrX 155233498 155233498 1 + G T LUAD 155233496 + 155233476 155233516 41 AGCAGGTCAGCCTGGTGGACCCGGAGTACCTGCCCCGGAGA AGCAGGTCAGCCTGGTGGACCCTGAGTACCTGCCCCGGAGA < 41bp 0.747308973392323 0.390584731431264 0.9114888 0.56572646 prediction 0.494617946784647 Functional Loss - IL9R ENSG00000124334 CDS Human protein_coding chrX:155233496 chrX:155233498 nonsynonymous SNV 0.615 0 23 hm5C_associated_SNPs_66203 0 0 0 0 1 IL9R chrX:155233520 5'GT 155233520 Upstream 23bp
chr14 99959201 99959201 1 + C T UCEC 99959199 + 99959179 99959219 41 GTTCATCTTTGATGTGGGCACACGTTTGGGGCTGTATCCTG GTTCATCTTTGATGTGGGCACATGTTTGGGGCTGTATCCTG < 41bp 0.795163837864207 0.547858023881443 0.6191345 0.8733771 prediction 0.494611627965529 Functional Loss - CCNK ENSG00000090061 CDS Human protein_coding chr14:99959199 chr14:99959201 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_66204 0 0 1 0 1 CCNK chr14:99959211 5'GT 99959211 Upstream 11bp
chr11 69978057 69978057 1 + C T CESC 69978055 + 69978035 69978075 41 TGTGACCAGAGACACAATATCACCATGTGCCCGCTTTGCGA TGTGACCAGAGACACAATATCATCATGTGCCCGCTTTGCGA < 41bp 0.834370498659949 0.587081540251526 0.04851699 0.037451714 prediction 0.494577916816846 Functional Loss - ANO1 ENSG00000131620 CDS Human protein_coding chr11:69978055 chr11:69978057 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_66209 0 0 0 0 1 ANO1 chr11:69978025 3'AG 69978025 Downstream 33bp
chr14 74040127 74040127 1 + G C UCEC 74040126 + 74040106 74040146 41 CCTGGGATTGTGGACATGTTCGGAACTGGAGGTGGCCTGCT CCTGGGATTGTGGACATGTTCCGAACTGGAGGTGGCCTGCT < 41bp 0.862071109645528 0.614789547807651 0.91015804 0.23737988 prediction 0.494563123675754 Functional Loss - ACOT2 ENSG00000119673 CDS Human protein_coding chr14:74040126 chr14:74040127 nonsynonymous SNV 0.015 4 22 hm5C_associated_SNPs_66211 0 0 1 0 1 ACOT2 chr14:74040092 3'AG 74040092 Downstream 36bp
chr1 161695639 161695639 1 + G C rs7520519 161695638 + 161695618 161695658 41 GATTCTGCAAGTGCCCTATGCGCCAGTGTTCGAGGGTGAGC GATTCTGCAAGTGCCCTATGCCCCAGTGTTCGAGGGTGAGC < 41bp 0.85929743987625 0.612016182676067 0.07546234 0.055046856 prediction 0.494562514400367 Functional Loss - FCRLB ENSG00000162746 CDS Human protein_coding chr1:161695638 chr1:161695639 synonymous SNV . 0 22 hm5C_associated_SNPs_66212 0 0 0 0 1 FCRLB chr1:161695611 3'AG 161695611 Downstream 29bp
chr11 74880450 74880450 1 + C T UCEC 74880448 + 74880428 74880468 41 ACAGCAACTCGCCCCTCTACCTCGGTGAGGACCAGTGCCAT ACAGCAACTCGCCCCTCTACCTTGGTGAGGACCAGTGCCAT < 41bp 0.788694536909113 0.541415351350802 0.28617352 0.26338607 prediction 0.494558371116622 Functional Loss - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74880448 chr11:74880450 synonymous SNV . 0 23 hm5C_associated_SNPs_66213 0 0 0 0 1 SLCO2B1 chr11:74880451 5'GT 74880451 Upstream 2bp
chr1 151262977 151262977 1 + C T rs61740560 151262975 + 151262955 151262995 41 AGAAACATGTCCAGGTCCGGCACGGCTTGCAGCTTGGGGCC AGAAACATGTCCAGGTCCGGCATGGCTTGCAGCTTGGGGCC < 41bp 0.774599146905196 0.52732937525581 0.29346722 0.26219386 prediction 0.494539543298772 Functional Loss - ZNF687 ENSG00000143373 CDS Human protein_coding chr1:151262975 chr1:151262977 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_66214 0 0 1 0 2 ZNF687 chr1:151262908 3'AG 151262908 Downstream 70bp
chr1 151262977 151262977 1 + C T rs61740560 151262975 + 151262955 151262995 41 AGAAACATGTCCAGGTCCGGCACGGCTTGCAGCTTGGGGCC AGAAACATGTCCAGGTCCGGCATGGCTTGCAGCTTGGGGCC < 41bp 0.774599146905196 0.52732937525581 0.29346722 0.26219386 prediction 0.494539543298772 Functional Loss - ZNF687 ENSG00000143373 CDS Human protein_coding chr1:151262975 chr1:151262977 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_66214 0 0 1 0 2 ZNF687 chr1:151263049 5'GT 151263049 Upstream 73bp
chr2 220111502 220111502 1 + C T UCEC 220111500 + 220111480 220111520 41 AGCGAGAAGCCGACATGCATCGCCTCTTCAATCACCCCAAC AGCGAGAAGCCGACATGCATCGTCTCTTCAATCACCCCAAC < 41bp 0.79092622469929 0.543660889864764 0.024522275 0.012557179 prediction 0.494530669669052 Functional Loss - STK16 ENSG00000115661 CDS Human protein_coding chr2:220111500 chr2:220111502 synonymous SNV . 0 23 hm5C_associated_SNPs_66216 0 0 1 0 1 STK16 chr2:220111598 5'GT 220111598 Upstream 97bp
chr2 234363496 234363496 1 + C T UCEC 234363494 + 234363474 234363514 41 CCCTGGACTTTAACAACAAGCGCGATGAGCACCCAGAGAAG CCCTGGACTTTAACAACAAGCGTGATGAGCACCCAGAGAAG < 41bp 0.747263166123993 0.470224474478123 0.15431821 0.2447513 prediction 0.494526332247986 Functional Loss - DGKD ENSG00000077044 CDS Human protein_coding chr2:234363494 chr2:234363496 synonymous SNV . 0 23 hm5C_associated_SNPs_66217 0 0 1 2 2 DGKD chr2:234363409 3'AG 234363409 Downstream 88bp
chr2 234363496 234363496 1 + C T UCEC 234363494 + 234363474 234363514 41 CCCTGGACTTTAACAACAAGCGCGATGAGCACCCAGAGAAG CCCTGGACTTTAACAACAAGCGTGATGAGCACCCAGAGAAG < 41bp 0.747263166123993 0.470224474478123 0.15431821 0.2447513 prediction 0.494526332247986 Functional Loss - DGKD ENSG00000077044 CDS Human protein_coding chr2:234363494 chr2:234363496 synonymous SNV . 0 23 hm5C_associated_SNPs_66217 0 0 1 2 2 DGKD chr2:234363519 5'GT 234363519 Upstream 24bp
chr6 31940512 31940512 1 + G T LGG 31940510 + 31940490 31940530 41 GTGTACAGCCTTGTGCCTGACAGGACCGTGGCCGACCGGCA GTGTACAGCCTTGTGCCTGACATGACCGTGGCCGACCGGCA < 41bp 0.818430535958289 0.571168246871095 0.8483014 0.28755605 prediction 0.494524578174389 Functional Loss - STK19 ENSG00000204344 CDS Human protein_coding chr6:31940510 chr6:31940512 nonsynonymous SNV 0.844 4 23 hm5C_associated_SNPs_66218 0 0 1 0 1 STK19 chr6:31940534 5'GT 31940534 Upstream 23bp
chr10 102738982 102738982 1 + T C LGG 102738981 + 102738961 102739001 41 TGCAGCCTGGATGCTGAAACCTCAAGCCGTACACACTTCTA TGCAGCCTGGATGCTGAAACCCCAAGCCGTACACACTTCTA < 41bp 0.777410845526274 0.530153023377249 0.3608331 0.8193558 prediction 0.494515644298049 Functional Loss - SEMA4G ENSG00000095539 CDS Human other chr10:102738981 chr10:102738982 nonsynonymous SNV 0.007 0 22 hm5C_associated_SNPs_66219 0 0 1 0 1 MRPL43;SEMA4G chr10:102739028 5'GT 102739028 Upstream 47bp
chr1 12711267 12711267 1 + C T rs150632390 12711265 + 12711245 12711285 41 ACCTGCGTTTTGGGACGATACCCGTGAGGCTGTTCCAGCCG ACCTGCGTTTTGGGACGATACCTGTGAGGCTGTTCCAGCCG < 41bp 0.777475753177892 0.530219158212831 0.38739192 0.2543614 prediction 0.494513189930123 Functional Loss - AADACL4 ENSG00000204518 CDS Human protein_coding chr1:12711265 chr1:12711267 synonymous SNV . 0 23 hm5C_associated_SNPs_66221 0 0 0 0 1 AADACL4 chr1:12711358 5'GT 12711358 Upstream 92bp
chr10 127434402 127434402 1 + C T rs369286039 127434400 + 127434380 127434420 41 GCCGCCCTTTTATTATGTAACACGGGAAGGCTCATGCGGAT GCCGCCCTTTTATTATGTAACATGGGAAGGCTCATGCGGAT < 41bp 0.799153809104933 0.551897478708965 0.23002854 0.37600553 prediction 0.494512660791937 Functional Loss - EDRF1 ENSG00000107938 CDS Human protein_coding chr10:127434400 chr10:127434402 nonsynonymous SNV 0.910 1 23 hm5C_associated_SNPs_66222 0 0 1 0 1 EDRF1 chr10:127434499 5'GT 127434499 Upstream 98bp
chr7 73467615 73467615 1 + G T SKCM 73467613 + 73467593 73467633 41 GATTCCAGTTGTCCCAGGTGCTGGGATCCCAGGTGCTGCGG GATTCCAGTTGTCCCAGGTGCTTGGATCCCAGGTGCTGCGG < 41bp 0.868905080378476 0.621653555556339 0.91282725 0.2936257 prediction 0.494503049644275 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73467613 chr7:73467615 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_66224 0 0 0 0 1 ELN chr7:73467639 5'GT 73467639 Upstream 25bp
chr2 144381745 144381745 1 + C T UCEC 144381743 + 144381723 144381763 41 ACAGCCAGTGGGAGGACATCCACGTTGTCACCGGAGCACTG ACAGCCAGTGGGAGGACATCCATGTTGTCACCGGAGCACTG < 41bp 0.770705217744699 0.523457265903044 0.0805603 0.14451176 prediction 0.494495903683309 Functional Loss - ARHGAP15 ENSG00000075884 CDS Human protein_coding chr2:144381743 chr2:144381745 synonymous SNV . 0 23 hm5C_associated_SNPs_66225 0 0 0 0 2 ARHGAP15 chr2:144381702 3'AG 144381702 Downstream 44bp
chr2 144381745 144381745 1 + C T UCEC 144381743 + 144381723 144381763 41 ACAGCCAGTGGGAGGACATCCACGTTGTCACCGGAGCACTG ACAGCCAGTGGGAGGACATCCATGTTGTCACCGGAGCACTG < 41bp 0.770705217744699 0.523457265903044 0.0805603 0.14451176 prediction 0.494495903683309 Functional Loss - ARHGAP15 ENSG00000075884 CDS Human protein_coding chr2:144381743 chr2:144381745 synonymous SNV . 0 23 hm5C_associated_SNPs_66225 0 0 0 0 2 ARHGAP15 chr2:144381836 5'GT 144381836 Upstream 92bp
chr17 16221220 16221220 1 + A C STAD 16221219 + 16221199 16221239 41 AGCAAAGAAGTGGCACAGGCCAAGGTGAGGATTGTAAATTC AGCAAAGAAGTGGCACAGGCCCAGGTGAGGATTGTAAATTC < 41bp 0.764791469978391 0.517544169335408 0.25728458 0.2741096 prediction 0.494494601285966 Functional Loss - PIGL ENSG00000108474 CDS Human protein_coding chr17:16221219 chr17:16221220 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_66226 0 0 1 0 1 PIGL chr17:16221222 5'GT 16221222 Upstream 3bp
chr6 161160209 161160209 1 + C T COAD 161160207 + 161160187 161160227 41 TAGGCTGTTCTTGGAGCCCACACGAAAAGATATTGCCTTGC TAGGCTGTTCTTGGAGCCCACATGAAAAGATATTGCCTTGC < 41bp 0.747236384825238 0.477806716189285 0.69207966 0.6685091 prediction 0.494472769650475 Functional Loss - PLG ENSG00000122194 CDS Human protein_coding chr6:161160207 chr6:161160209 stopgain 0.000 0 23 hm5C_associated_SNPs_66233 0 0 0 0 1 PLG chr6:161160240 5'GT 161160240 Upstream 32bp
chr3 9971756 9971756 1 + C T STAD 9971754 + 9971734 9971774 41 CGATGTGCTACTGTTGGAGACACGAGGCCCCCAGGACAACA CGATGTGCTACTGTTGGAGACATGAGGCCCCCAGGACAACA < 41bp 0.766783439252273 0.519547137323703 0.29604226 0.29673848 prediction 0.494472603857139 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9971754 chr3:9971756 stopgain 0.060 0 23 hm5C_associated_SNPs_66234 0 0 0 0 2 IL17RC chr3:9971712 3'AG 9971712 Downstream 45bp
chr3 9971756 9971756 1 + C T STAD 9971754 + 9971734 9971774 41 CGATGTGCTACTGTTGGAGACACGAGGCCCCCAGGACAACA CGATGTGCTACTGTTGGAGACATGAGGCCCCCAGGACAACA < 41bp 0.766783439252273 0.519547137323703 0.29604226 0.29673848 prediction 0.494472603857139 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9971754 chr3:9971756 stopgain 0.060 0 23 hm5C_associated_SNPs_66234 0 0 0 0 2 IL17RC chr3:9971833 5'GT 9971833 Upstream 78bp
chr2 69046367 69046367 1 + G T COAD 69046364 + 69046344 69046384 41 CCTGCCCAGAAAAATGACCCCAAGAAAGCTCCAGTGGCCCG CCTGCCCAGAAAAATGACCCCAATAAAGCTCCAGTGGCCCG < 41bp 0.747226197995857 0.35364454132612 0.05483395 0.032381207 prediction 0.494452395991713 Functional Loss - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69046364 chr2:69046367 nonsynonymous SNV 0.984 2 24 hm5C_associated_SNPs_66236 0 0 0 0 1 ARHGAP25 chr2:69046451 5'GT 69046451 Upstream 85bp
chr1 13522170 13522170 1 + G T COAD 13522168 + 13522148 13522188 41 GGCCTTTCCTCCGCCTTCCTCTGGGGTCTCTGATGAAAAGG GGCCTTTCCTCCGCCTTCCTCTTGGGTCTCTGATGAAAAGG < 41bp 0.896239840973156 0.649021580273594 0.891526 0.2955137 prediction 0.494436521399124 Functional Loss - PRAMEF20 ENSG00000204486 CDS Human other chr1:13522168 chr1:13522170 synonymous SNV . 0 23 hm5C_associated_SNPs_66237 0 0 0 0 1 PRAMEF20 chr1:13522259 5'GT 13522259 Upstream 90bp
chr2 113763575 113763575 1 + A C rs895497 113763574 + 113763554 113763594 41 TGAAAATTGACACACCTCAGCAGGGGAGCATTCAGGATATC TGAAAATTGACACACCTCAGCCGGGGAGCATTCAGGATATC < 41bp 0.747211062295702 0.489117706876164 0.7772612 0.6272667 prediction 0.494422124591404 Functional Loss - IL36A ENSG00000136694 CDS Human protein_coding chr2:113763574 chr2:113763575 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_66240 0 0 0 0 2 IL36A chr2:113763551 3'AG 113763551 Downstream 25bp
chr2 113763575 113763575 1 + A C rs895497 113763574 + 113763554 113763594 41 TGAAAATTGACACACCTCAGCAGGGGAGCATTCAGGATATC TGAAAATTGACACACCTCAGCCGGGGAGCATTCAGGATATC < 41bp 0.747211062295702 0.489117706876164 0.7772612 0.6272667 prediction 0.494422124591404 Functional Loss - IL36A ENSG00000136694 CDS Human protein_coding chr2:113763574 chr2:113763575 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_66240 0 0 0 0 2 IL36A chr2:113763664 5'GT 113763664 Upstream 90bp
chr2 113763577 113763577 1 + G T LUAD 113763574 + 113763554 113763594 41 TGAAAATTGACACACCTCAGCAGGGGAGCATTCAGGATATC TGAAAATTGACACACCTCAGCAGTGGAGCATTCAGGATATC < 41bp 0.747211062295702 0.34746444820037 0.7772612 0.099134624 prediction 0.494422124591404 Functional Loss - IL36A ENSG00000136694 CDS Human protein_coding chr2:113763574 chr2:113763577 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_66241 0 0 0 0 2 IL36A chr2:113763551 3'AG 113763551 Downstream 27bp
chr2 113763577 113763577 1 + G T LUAD 113763574 + 113763554 113763594 41 TGAAAATTGACACACCTCAGCAGGGGAGCATTCAGGATATC TGAAAATTGACACACCTCAGCAGTGGAGCATTCAGGATATC < 41bp 0.747211062295702 0.34746444820037 0.7772612 0.099134624 prediction 0.494422124591404 Functional Loss - IL36A ENSG00000136694 CDS Human protein_coding chr2:113763574 chr2:113763577 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_66241 0 0 0 0 2 IL36A chr2:113763664 5'GT 113763664 Upstream 88bp
chr14 78325584 78325584 1 + G T ESCA 78325581 + 78325561 78325601 41 AGGCTCCACAGAGCAGCATGCAAGAGATCCGCCAGGTCATC AGGCTCCACAGAGCAGCATGCAATAGATCCGCCAGGTCATC < 41bp 0.747203747106799 0.363283325889071 0.8472054 0.2451132 prediction 0.494407494213599 Functional Loss - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78325581 chr14:78325584 stopgain 1.000 1 24 hm5C_associated_SNPs_66245 0 0 0 0 1 ADCK1 chr14:78325622 5'GT 78325622 Upstream 39bp
chr8 109489054 109489054 1 + G T COAD 109489051 + 109489031 109489071 41 ACTTGAAAACCTCGAACTTTCAAGAAAGTATTTTGCACAGG ACTTGAAAACCTCGAACTTTCAATAAAGTATTTTGCACAGG < 41bp 0.891905392339618 0.644718785046137 0.6596403 0.1680091 prediction 0.494373214586962 Functional Loss - EMC2 ENSG00000104412 CDS Human protein_coding chr8:109489051 chr8:109489054 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_66247 0 0 1 0 2 EMC2 chr8:109489011 3'AG 109489011 Downstream 44bp
chr8 109489054 109489054 1 + G T COAD 109489051 + 109489031 109489071 41 ACTTGAAAACCTCGAACTTTCAAGAAAGTATTTTGCACAGG ACTTGAAAACCTCGAACTTTCAATAAAGTATTTTGCACAGG < 41bp 0.891905392339618 0.644718785046137 0.6596403 0.1680091 prediction 0.494373214586962 Functional Loss - EMC2 ENSG00000104412 CDS Human protein_coding chr8:109489051 chr8:109489054 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_66247 0 0 1 0 2 EMC2 chr8:109489121 5'GT 109489121 Upstream 68bp
chr15 72958168 72958168 1 + C T UCEC 72958166 + 72958146 72958186 41 AGCCAGGGGGCAGTGCCAAACACGCGGCACCAGGAGATGGA AGCCAGGGGGCAGTGCCAAACATGCGGCACCAGGAGATGGA < 41bp 0.747182910239795 0.480873623798838 0.05271083 0.02506566 prediction 0.49436582047959 Functional Loss - GOLGA6B ENSG00000215186 CDS Human protein_coding chr15:72958166 chr15:72958168 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_66248 0 0 0 0 2 GOLGA6B chr15:72958123 3'AG 72958123 Downstream 46bp
chr15 72958168 72958168 1 + C T UCEC 72958166 + 72958146 72958186 41 AGCCAGGGGGCAGTGCCAAACACGCGGCACCAGGAGATGGA AGCCAGGGGGCAGTGCCAAACATGCGGCACCAGGAGATGGA < 41bp 0.747182910239795 0.480873623798838 0.05271083 0.02506566 prediction 0.49436582047959 Functional Loss - GOLGA6B ENSG00000215186 CDS Human protein_coding chr15:72958166 chr15:72958168 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_66248 0 0 0 0 2 GOLGA6B chr15:72958226 5'GT 72958226 Upstream 59bp
chr4 185940063 185940063 1 + G T rs200226120 185940060 + 185940040 185940080 41 TGCCCCGCGCCACCGCCTCTCCCGAGGGCGCGTACTGACCA TGCCCCGCGCCACCGCCTCTCCCTAGGGCGCGTACTGACCA < 41bp 0.747178324342287 0.38061653188146 0.2890476 0.14523512 prediction 0.494356648684574 Functional Loss - HELT ENSG00000187821 UTR5 Human protein_coding chr4:185940060 chr4:185940063 . . 0 24 hm5C_associated_SNPs_66250 0 0 0 0 1 HELT chr4:185940109 5'GT 185940109 Upstream 47bp
chr9 133333898 133333898 1 + G A COAD 133333895 + 133333875 133333915 41 CTCCTGGGCACCTCTCTTGCCAGGCCCTGCATCGCCCGCAA CTCCTGGGCACCTCTCTTGCCAGACCCTGCATCGCCCGCAA < 41bp 0.75785140031083 0.510676046033608 0.8075719 0.45010054 prediction 0.494350708554444 Functional Loss - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133333895 chr9:133333898 synonymous SNV . 0 24 hm5C_associated_SNPs_66253 0 0 1 0 1 ASS1 chr9:133333976 5'GT 133333976 Upstream 79bp
chr16 31383062 31383062 1 + T C HNSC 31383061 + 31383041 31383081 41 GTCTGAGCCGAGTCCGAGTCCTCGGGCTGAAGGCACACTGT GTCTGAGCCGAGTCCGAGTCCCCGGGCTGAAGGCACACTGT < 41bp 0.764094936121527 0.516919660766506 0.112068504 0.14940152 prediction 0.494350550710042 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31383061 chr16:31383062 nonsynonymous SNV 0.013 3 22 hm5C_associated_SNPs_66254 0 0 0 0 1 ITGAX chr16:31383105 5'GT 31383105 Upstream 44bp
chr13 111920008 111920008 1 + C T rs376914209 111920006 + 111919986 111920026 41 CCTTCTGCAGTGAATGTCCTCACGGAACACAGGTGCGCTTG CCTTCTGCAGTGAATGTCCTCATGGAACACAGGTGCGCTTG < 41bp 0.772887201374892 0.525730798269057 0.5563583 0.21291056 prediction 0.49431280621167 Functional Loss - ARHGEF7 ENSG00000102606 CDS Human protein_coding chr13:111920006 chr13:111920008 nonsynonymous SNV 0.993 3 23 hm5C_associated_SNPs_66259 0 0 1 0 1 ARHGEF7 chr13:111920017 5'GT 111920017 Upstream 10bp
chr9 133748310 133748310 1 + T C COAD 133748309 + 133748289 133748329 41 TCATGACCTACGGGAACCTCCTGGACTACCTGAGGGAGTGC TCATGACCTACGGGAACCTCCCGGACTACCTGAGGGAGTGC < 41bp 0.769262960879216 0.522114209896127 0.21348056 0.2494381 prediction 0.494297501966178 Functional Loss - ABL1 ENSG00000097007 CDS Human protein_coding chr9:133748309 chr9:133748310 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_66261 0 0 1 0 1 ABL1 chr9:133748247 3'AG 133748247 Downstream 64bp
chr16 15123878 15123878 1 + C T CESC 15123876 + 15123856 15123896 41 ATGGATCTGGAAGCTGAGGGCACGTGTTTGCGGTTCAGCCC ATGGATCTGGAAGCTGAGGGCATGTGTTTGCGGTTCAGCCC < 41bp 0.747141795723663 0.485013468539408 0.09798515 0.11096713 prediction 0.494283591447326 Functional Loss - PDXDC1 ENSG00000179889 CDS Human protein_coding chr16:15123876 chr16:15123878 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_66262 0 0 1 0 2 PDXDC1 chr16:15123808 3'AG 15123808 Downstream 71bp
chr16 15123878 15123878 1 + C T CESC 15123876 + 15123856 15123896 41 ATGGATCTGGAAGCTGAGGGCACGTGTTTGCGGTTCAGCCC ATGGATCTGGAAGCTGAGGGCATGTGTTTGCGGTTCAGCCC < 41bp 0.747141795723663 0.485013468539408 0.09798515 0.11096713 prediction 0.494283591447326 Functional Loss - PDXDC1 ENSG00000179889 CDS Human protein_coding chr16:15123876 chr16:15123878 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_66262 0 0 1 0 2 PDXDC1 chr16:15123913 5'GT 15123913 Upstream 36bp
chr19 58991385 58991385 1 + G A rs372496370 58991382 + 58991362 58991402 41 GGCGTCTGCAGAAGCCTGCGCTCGGGTGAGTGCCCCACACC GGCGTCTGCAGAAGCCTGCGCTCAGGTGAGTGCCCCACACC < 41bp 0.747138719053964 0.499922944162281 0.6651265 0.33494276 prediction 0.494277438107927 Functional Loss - ZNF446 ENSG00000083838 CDS Human protein_coding chr19:58991382 chr19:58991385 nonsynonymous SNV 0.011 0 24 hm5C_associated_SNPs_66263 0 0 0 0 2 ZNF446 chr19:58991297 3'AG 58991297 Downstream 89bp
chr19 58991385 58991385 1 + G A rs372496370 58991382 + 58991362 58991402 41 GGCGTCTGCAGAAGCCTGCGCTCGGGTGAGTGCCCCACACC GGCGTCTGCAGAAGCCTGCGCTCAGGTGAGTGCCCCACACC < 41bp 0.747138719053964 0.499922944162281 0.6651265 0.33494276 prediction 0.494277438107927 Functional Loss - ZNF446 ENSG00000083838 CDS Human protein_coding chr19:58991382 chr19:58991385 nonsynonymous SNV 0.011 0 24 hm5C_associated_SNPs_66263 0 0 0 0 2 ZNF446 chr19:58991386 5'GT 58991386 Upstream 2bp
chr12 124156647 124156647 1 + G T COAD 124156645 + 124156625 124156665 41 TGGAGTGCTGAACAATGAGACGGAAGACTGGAGCGTGACTG TGGAGTGCTGAACAATGAGACGTAAGACTGGAGCGTGACTG < 41bp 0.747133856625123 0.39641232282854 0.13148803 0.052432477 prediction 0.494267713250246 Functional Loss - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124156645 chr12:124156647 stopgain 0.015 0 23 hm5C_associated_SNPs_66265 0 0 1 0 2 TCTN2 chr12:124156603 3'AG 124156603 Downstream 45bp
chr12 124156647 124156647 1 + G T COAD 124156645 + 124156625 124156665 41 TGGAGTGCTGAACAATGAGACGGAAGACTGGAGCGTGACTG TGGAGTGCTGAACAATGAGACGTAAGACTGGAGCGTGACTG < 41bp 0.747133856625123 0.39641232282854 0.13148803 0.052432477 prediction 0.494267713250246 Functional Loss - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124156645 chr12:124156647 stopgain 0.015 0 23 hm5C_associated_SNPs_66265 0 0 1 0 2 TCTN2 chr12:124156679 5'GT 124156679 Upstream 33bp
chr3 14180779 14180779 1 + C T UCEC 14180777 + 14180757 14180797 41 CATGGGCCTCAACCTTATGACACGGATCCTCTACACCTTGG CATGGGCCTCAACCTTATGACATGGATCCTCTACACCTTGG < 41bp 0.785553353991746 0.538431139202838 0.28719318 0.30762178 prediction 0.494244429577816 Functional Loss - TMEM43 ENSG00000170876;ENSG00000268279 CDS Human other chr3:14180777 chr3:14180779 nonsynonymous SNV 0.979 4 23 hm5C_associated_SNPs_66270 0 0 1 0 2 TMEM43 chr3:14180680 3'AG 14180680 Downstream 100bp
chr3 14180779 14180779 1 + C T UCEC 14180777 + 14180757 14180797 41 CATGGGCCTCAACCTTATGACACGGATCCTCTACACCTTGG CATGGGCCTCAACCTTATGACATGGATCCTCTACACCTTGG < 41bp 0.785553353991746 0.538431139202838 0.28719318 0.30762178 prediction 0.494244429577816 Functional Loss - TMEM43 ENSG00000170876;ENSG00000268279 CDS Human other chr3:14180777 chr3:14180779 nonsynonymous SNV 0.979 4 23 hm5C_associated_SNPs_66270 0 0 1 0 2 TMEM43 chr3:14180797 5'GT 14180797 Upstream 19bp
chr12 100613887 100613887 1 + C T LUSC 100613885 + 100613865 100613905 41 CTCAGAAGTTCGATGTCTTACTCCAACAGATTATGATGTTT CTCAGAAGTTCGATGTCTTACTTCAACAGATTATGATGTTT < 41bp 0.747111513927192 0.44449724704722 0.9470413 0.10941082 prediction 0.494223027854384 Functional Loss - ACTR6 ENSG00000075089 CDS Human protein_coding chr12:100613885 chr12:100613887 nonsynonymous SNV 0.964 4 23 hm5C_associated_SNPs_66275 0 0 1 0 1 ACTR6 chr12:100613924 5'GT 100613924 Upstream 38bp
chr5 180657831 180657831 1 + G T UCEC 180657829 + 180657809 180657849 41 CAAGGAGGAGAGGCGAGTGACAGAACTGAAGGTGGGTGAAT CAAGGAGGAGAGGCGAGTGACATAACTGAAGGTGGGTGAAT < 41bp 0.747108351923529 0.416346165044932 0.41987538 0.28998065 prediction 0.494216703847058 Functional Loss - TRIM41 ENSG00000146063 CDS Human protein_coding chr5:180657829 chr5:180657831 stopgain 0.994 1 23 hm5C_associated_SNPs_66276 0 0 1 1 1 TRIM41 chr5:180657839 5'GT 180657839 Upstream 9bp
chr20 18462387 18462387 1 + T C SKCM 18462386 + 18462366 18462406 41 GTGTAGATGGACACATGAAACTGTACAGGGCAGTCAATCCA GTGTAGATGGACACATGAAACCGTACAGGGCAGTCAATCCA < 41bp 0.770727183816504 0.523619679526639 0.11675498 0.041739136 prediction 0.494215008579731 Functional Loss - POLR3F ENSG00000132664 CDS Human protein_coding chr20:18462386 chr20:18462387 nonsynonymous SNV 0.983 2 22 hm5C_associated_SNPs_66277 0 0 1 2 1 POLR3F chr20:18462454 5'GT 18462454 Upstream 68bp
chr1 206331081 206331081 1 + C T STAD 206331079 + 206331059 206331099 41 TCAAGGACTTGACATCCACCCTCCAGCTGGGCCCCTCTGGA TCAAGGACTTGACATCCACCCTTCAGCTGGGCCCCTCTGGA < 41bp 0.830786358866379 0.583681952306188 0.94238126 0.06838673 prediction 0.494208813120381 Functional Loss - CTSE ENSG00000196188 CDS Human protein_coding chr1:206331079 chr1:206331081 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_66278 0 0 0 0 1 CTSE chr1:206331021 3'AG 206331021 Downstream 61bp
chr7 128481572 128481572 1 + C T SKCM 128481570 + 128481550 128481590 41 GTGGACAAGCCCGCTGAGTTCACCATTGATGCTCGTGCAGC GTGGACAAGCCCGCTGAGTTCATCATTGATGCTCGTGCAGC < 41bp 0.747102774272494 0.479369996762526 0.60061723 0.32504347 prediction 0.494205548544989 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128481570 chr7:128481572 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_66279 0 0 1 0 2 FLNC chr7:128481508 3'AG 128481508 Downstream 65bp
chr7 128481572 128481572 1 + C T SKCM 128481570 + 128481550 128481590 41 GTGGACAAGCCCGCTGAGTTCACCATTGATGCTCGTGCAGC GTGGACAAGCCCGCTGAGTTCATCATTGATGCTCGTGCAGC < 41bp 0.747102774272494 0.479369996762526 0.60061723 0.32504347 prediction 0.494205548544989 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128481570 chr7:128481572 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_66279 0 0 1 0 2 FLNC chr7:128481621 5'GT 128481621 Upstream 50bp
chr1 40506454 40506454 1 + A C rs145869294 40506450 + 40506430 40506470 41 GGAGAGCGGCTGATCGCAGTCCGGAGGTGAGGCGGAACTCT GGAGAGCGGCTGATCGCAGTCCGGCGGTGAGGCGGAACTCT < 41bp 0.806538606418695 0.559437071317268 0.9214785 0.9125407 prediction 0.494203070202854 Functional Loss - CAP1 ENSG00000131236 UTR5 Human protein_coding chr1:40506450 chr1:40506454 . . 0 25 hm5C_associated_SNPs_66280 0 0 1 0 2 CAP1 chr1:40506455 5'GT 40506455 Upstream 2bp
chr1 40506454 40506454 1 + A C rs145869294 40506450 + 40506430 40506470 41 GGAGAGCGGCTGATCGCAGTCCGGAGGTGAGGCGGAACTCT GGAGAGCGGCTGATCGCAGTCCGGCGGTGAGGCGGAACTCT < 41bp 0.806538606418695 0.559437071317268 0.9214785 0.9125407 prediction 0.494203070202854 Functional Loss - CAP1 ENSG00000131236 UTR5 Human protein_coding chr1:40506450 chr1:40506454 . . 0 25 hm5C_associated_SNPs_66280 0 0 1 0 2 CAP1 chr1:40506473 5'GT 40506473 Upstream 20bp
chr2 170597964 170597964 1 + G T UCEC 170597962 + 170597942 170597982 41 ATTGGTGGCCACTGTGGCTACAGAGGAAGCTGCACCTATGA ATTGGTGGCCACTGTGGCTACATAGGAAGCTGCACCTATGA < 41bp 0.747079704884815 0.404060900137219 0.8962742 0.37526166 prediction 0.494159409769629 Functional Loss - KLHL23;PHOSPHO2-KLHL23 ENSG00000213160 CDS Human protein_coding chr2:170597962 chr2:170597964 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_66282 0 0 0 0 2 KLHL23;PHOSPHO2-KLHL23 chr2:170597895 3'AG 170597895 Downstream 70bp
chr2 170597964 170597964 1 + G T UCEC 170597962 + 170597942 170597982 41 ATTGGTGGCCACTGTGGCTACAGAGGAAGCTGCACCTATGA ATTGGTGGCCACTGTGGCTACATAGGAAGCTGCACCTATGA < 41bp 0.747079704884815 0.404060900137219 0.8962742 0.37526166 prediction 0.494159409769629 Functional Loss - KLHL23;PHOSPHO2-KLHL23 ENSG00000213160 CDS Human protein_coding chr2:170597962 chr2:170597964 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_66282 0 0 0 0 2 KLHL23;PHOSPHO2-KLHL23 chr2:170598047 5'GT 170598047 Upstream 84bp
chr11 71850160 71850160 1 + G C rs188821779 71850156 + 71850136 71850176 41 TTTATCCAGGACAGCTGTCTCTGAGTGCTCACCCAACCTGG TTTATCCAGGACAGCTGTCTCTGACTGCTCACCCAACCTGG < 41bp 0.845020729260638 0.597945183701371 0.760419 0.16565302 prediction 0.494151091118533 Functional Loss - FOLR3 ENSG00000110203 CDS Human protein_coding chr11:71850156 chr11:71850160 nonsynonymous SNV 0.991 2 25 hm5C_associated_SNPs_66283 0 0 0 0 1 FOLR3 chr11:71850193 5'GT 71850193 Upstream 34bp
chr10 104182582 104182582 1 + C T BLCA 104182580 + 104182560 104182600 41 GGACATTGGCCGAGTACTGCCCCGTGCTGCGTTCGCTGCGG GGACATTGGCCGAGTACTGCCCTGTGCTGCGTTCGCTGCGG < 41bp 0.750933179506233 0.503862153403489 0.3433553 0.2937592 prediction 0.494142052205487 Functional Loss - FBXL15 ENSG00000107872 CDS Human protein_coding chr10:104182580 chr10:104182582 synonymous SNV . 0 23 hm5C_associated_SNPs_66285 0 0 1 0 1 FBXL15 chr10:104182561 3'AG 104182561 Downstream 22bp
chr1 93698031 93698031 1 + G T UCEC 93698028 + 93698008 93698048 41 AGATAAAAAATCACAGTCTTCAAGAGACTTCTGAGCAAAAC AGATAAAAAATCACAGTCTTCAATAGACTTCTGAGCAAAAC < 41bp 0.74705216443375 0.385642136220278 0.67762864 0.21337968 prediction 0.494104328867499 Functional Loss - CCDC18 ENSG00000122483 CDS Human protein_coding chr1:93698028 chr1:93698031 stopgain 0.946 0 24 hm5C_associated_SNPs_66288 0 0 1 0 1 CCDC18 chr1:93697983 3'AG 93697983 Downstream 49bp
chr17 4858863 4858863 1 + G T BLCA 4858860 + 4858840 4858880 41 GGCACATCACTGGGGAGAAGCTCGGAGAGCTGTATAAGAGC GGCACATCACTGGGGAGAAGCTCTGAGAGCTGTATAAGAGC < 41bp 0.747047953880262 0.349362402902616 0.5417289 0.36330253 prediction 0.494095907760524 Functional Loss - ENO3 ENSG00000108515 CDS Human protein_coding chr17:4858860 chr17:4858863 stopgain 0.493 1 24 hm5C_associated_SNPs_66292 0 0 1 0 1 ENO3 chr17:4858899 5'GT 4858899 Upstream 37bp
chr3 39436027 39436027 1 + A C UCEC 39436023 + 39436003 39436043 41 CTCATATGCAGCTTTATCCACTGAAGTTTCAATGGATTGGC CTCATATGCAGCTTTATCCACTGACGTTTCAATGGATTGGC < 41bp 0.747034582222101 0.333838424869029 0.10614371 0.13646272 prediction 0.494069164444201 Functional Loss - SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39436023 chr3:39436027 nonsynonymous SNV 0.920 1 25 hm5C_associated_SNPs_66296 0 0 1 0 1 SLC25A38 chr3:39436067 5'GT 39436067 Upstream 41bp
chr12 7310207 7310207 1 + C T SKCM 7310205 + 7310185 7310225 41 CGTCTCAGGGGCCGGCGGGCCTCCAGGGGCCTCCAGTGACC CGTCTCAGGGGCCGGCGGGCCTTCAGGGGCCTCCAGTGACC < 41bp 0.833562382890221 0.586528090290129 0.9524318 0.4056218 prediction 0.494068585200183 Functional Loss - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7310205 chr12:7310207 nonsynonymous SNV 0.098 0 23 hm5C_associated_SNPs_66297 0 0 1 0 1 CLSTN3 chr12:7310287 5'GT 7310287 Upstream 81bp
chr11 67187018 67187018 1 - C A rs375626867 67187020 - 67187000 67187040 41 ACCACTGCACCCAGCTCTGCCCGCGGGTGCAGACGCCATGC ACCACTGCACCCAGCTCTGCCCTCGGGTGCAGACGCCATGC < 41bp 0.747029863099158 0.392588361510654 0.8928492 0.85522425 prediction 0.494059726198315 Functional Loss - CARNS1 ENSG00000172508;ENSG00000172531 CDS Human other chr11:67187020 chr11:67187018 synonymous SNV . 0 23 hm5C_associated_SNPs_66298 0 0 0 0 1 CARNS1 chr11:67187068 3'AG 67187068 Downstream 51bp
chr1 36557280 36557280 1 + T C COAD 36557279 + 36557259 36557299 41 GGTGCTGGAGTAGTCACTGTCTTCAAGAAGCTCCTGAACCC GGTGCTGGAGTAGTCACTGTCCTCAAGAAGCTCCTGAACCC < 41bp 0.788127482492158 0.541099592269706 0.13109854 0.112917304 prediction 0.494055780444903 Functional Loss - ADPRHL2 ENSG00000116863 CDS Human protein_coding chr1:36557279 chr1:36557280 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_66299 0 0 1 0 1 ADPRHL2 chr1:36557219 3'AG 36557219 Downstream 62bp
chr12 7044722 7044722 1 + C T BLCA 7044720 + 7044700 7044740 41 TTTTCTACAGCAGGAACTCCCTCGGCCACAGTCTCCCTCCG TTTTCTACAGCAGGAACTCCCTTGGCCACAGTCTCCCTCCG < 41bp 0.747017595078996 0.48246220368257 0.8426682 0.59385085 prediction 0.494035190157992 Functional Loss - ATN1 ENSG00000111676 CDS Human protein_coding chr12:7044720 chr12:7044722 nonsynonymous SNV 0.991 3 23 hm5C_associated_SNPs_66305 0 0 1 0 2 ATN1 chr12:7044710 3'AG 7044710 Downstream 13bp
chr12 7044722 7044722 1 + C T BLCA 7044720 + 7044700 7044740 41 TTTTCTACAGCAGGAACTCCCTCGGCCACAGTCTCCCTCCG TTTTCTACAGCAGGAACTCCCTTGGCCACAGTCTCCCTCCG < 41bp 0.747017595078996 0.48246220368257 0.8426682 0.59385085 prediction 0.494035190157992 Functional Loss - ATN1 ENSG00000111676 CDS Human protein_coding chr12:7044720 chr12:7044722 nonsynonymous SNV 0.991 3 23 hm5C_associated_SNPs_66305 0 0 1 0 2 ATN1 chr12:7044713 3'AG 7044713 Downstream 10bp
chr5 178503532 178503532 1 + G T HNSC 178503529 + 178503509 178503549 41 TCTGCCCAGAGGGCCTTGTACCGGGAGGTGATGCTGGAGAA TCTGCCCAGAGGGCCTTGTACCGTGAGGTGATGCTGGAGAA < 41bp 0.920042843843652 0.673037387402148 0.9356594 0.5791048 prediction 0.494010912883008 Functional Loss - ZNF354C ENSG00000177932 CDS Human protein_coding chr5:178503529 chr5:178503532 synonymous SNV . 0 24 hm5C_associated_SNPs_66308 0 0 0 0 2 ZNF354C chr5:178503446 3'AG 178503446 Downstream 87bp
chr5 178503532 178503532 1 + G T HNSC 178503529 + 178503509 178503549 41 TCTGCCCAGAGGGCCTTGTACCGGGAGGTGATGCTGGAGAA TCTGCCCAGAGGGCCTTGTACCGTGAGGTGATGCTGGAGAA < 41bp 0.920042843843652 0.673037387402148 0.9356594 0.5791048 prediction 0.494010912883008 Functional Loss - ZNF354C ENSG00000177932 CDS Human protein_coding chr5:178503529 chr5:178503532 synonymous SNV . 0 24 hm5C_associated_SNPs_66308 0 0 0 0 2 ZNF354C chr5:178503572 5'GT 178503572 Upstream 41bp
chr1 227149164 227149164 1 + C T rs150541057 227149162 + 227149142 227149182 41 CCCAGGCGGCCGTGGAAACCCACCTGCAGCACTTGGGCATC CCCAGGCGGCCGTGGAAACCCATCTGCAGCACTTGGGCATC < 41bp 0.795408069912844 0.548406002367604 0.21152732 0.35735807 prediction 0.49400413509048 Functional Loss - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227149162 chr1:227149164 synonymous SNV . 0 23 hm5C_associated_SNPs_66310 1 0 1 0 3 COQ8A chr1:227149078 3'AG 227149078 Downstream 87bp
chr1 227149164 227149164 1 + C T rs150541057 227149162 + 227149142 227149182 41 CCCAGGCGGCCGTGGAAACCCACCTGCAGCACTTGGGCATC CCCAGGCGGCCGTGGAAACCCATCTGCAGCACTTGGGCATC < 41bp 0.795408069912844 0.548406002367604 0.21152732 0.35735807 prediction 0.49400413509048 Functional Loss - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227149162 chr1:227149164 synonymous SNV . 0 23 hm5C_associated_SNPs_66310 1 0 1 0 3 COQ8A chr1:227149127 3'AG 227149127 Downstream 38bp
chr1 227149164 227149164 1 + C T rs150541057 227149162 + 227149142 227149182 41 CCCAGGCGGCCGTGGAAACCCACCTGCAGCACTTGGGCATC CCCAGGCGGCCGTGGAAACCCATCTGCAGCACTTGGGCATC < 41bp 0.795408069912844 0.548406002367604 0.21152732 0.35735807 prediction 0.49400413509048 Functional Loss - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227149162 chr1:227149164 synonymous SNV . 0 23 hm5C_associated_SNPs_66310 1 0 1 0 3 COQ8A chr1:227149263 5'GT 227149263 Upstream 100bp
chr15 68473620 68473620 1 + T C KIRC 68473619 + 68473599 68473639 41 CTTCCTGCTGTAGACACAAGCTACATTAATACCTCCCTCAT CTTCCTGCTGTAGACACAAGCCACATTAATACCTCCCTCAT < 41bp 0.746988156304629 0.480351209115429 0.08550346 0.038802266 prediction 0.493976312609259 Functional Loss - PIAS1 ENSG00000033800 CDS Human protein_coding chr15:68473619 chr15:68473620 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_66313 0 0 1 0 2 PIAS1 chr15:68473550 3'AG 68473550 Downstream 71bp
chr15 68473620 68473620 1 + T C KIRC 68473619 + 68473599 68473639 41 CTTCCTGCTGTAGACACAAGCTACATTAATACCTCCCTCAT CTTCCTGCTGTAGACACAAGCCACATTAATACCTCCCTCAT < 41bp 0.746988156304629 0.480351209115429 0.08550346 0.038802266 prediction 0.493976312609259 Functional Loss - PIAS1 ENSG00000033800 CDS Human protein_coding chr15:68473619 chr15:68473620 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_66313 0 0 1 0 2 PIAS1 chr15:68473692 5'GT 68473692 Upstream 73bp
chr22 24911294 24911294 1 + G T ACC 24911291 + 24911271 24911311 41 TGGCTTATGTACAGCATCAACGGGGCTGAGATCATCTTCAA TGGCTTATGTACAGCATCAACGGTGCTGAGATCATCTTCAA < 41bp 0.922519151773083 0.675537102598955 0.9191108 0.37129563 prediction 0.493964098348254 Functional Loss - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24911291 chr22:24911294 synonymous SNV . 0 24 hm5C_associated_SNPs_66314 0 0 0 0 1 UPB1 chr22:24911338 5'GT 24911338 Upstream 45bp
chr19 12866479 12866479 1 + C T HNSC 12866477 + 12866457 12866497 41 TCCTGGCTTGCCTCATTGGTCGCCAGTTCCTGGACCCGGCT TCCTGGCTTGCCTCATTGGTCGTCAGTTCCTGGACCCGGCT < 41bp 0.826560263370169 0.579584842962018 0.5185453 0.2255635 prediction 0.4939508408163 Functional Loss - BEST2 ENSG00000039987 CDS Human protein_coding chr19:12866477 chr19:12866479 synonymous SNV . 0 23 hm5C_associated_SNPs_66316 0 0 0 0 1 BEST2 chr19:12866429 3'AG 12866429 Downstream 51bp
chr4 54294260 54294260 1 + C T HNSC 54294258 + 54294238 54294278 41 CAAACCACCTCCGTTTTTCCCTCCAGGAGCTCCTCCCACTC CAAACCACCTCCGTTTTTCCCTTCAGGAGCTCCTCCCACTC < 41bp 0.83054812544158 0.583577601353254 0.9546377 0.043992817 prediction 0.493941048176652 Functional Loss - FIP1L1 ENSG00000145216 CDS Human protein_coding chr4:54294258 chr4:54294260 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_66319 0 0 1 0 1 FIP1L1 chr4:54294350 5'GT 54294350 Upstream 91bp
chr19 34291394 34291394 1 + C T CESC 34291392 + 34291372 34291412 41 AAGGAGCGGCCGAGCGGGTCCTCGCTTCACACACACGGCAG AAGGAGCGGCCGAGCGGGTCCTTGCTTCACACACACGGCAG < 41bp 0.77789054576883 0.530921207405728 0.035134137 0.047976494 prediction 0.493938676726203 Functional Loss - KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34291392 chr19:34291394 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_66320 0 0 1 0 2 KCTD15 chr19:34291333 3'AG 34291333 Downstream 62bp
chr19 34291394 34291394 1 + C T CESC 34291392 + 34291372 34291412 41 AAGGAGCGGCCGAGCGGGTCCTCGCTTCACACACACGGCAG AAGGAGCGGCCGAGCGGGTCCTTGCTTCACACACACGGCAG < 41bp 0.77789054576883 0.530921207405728 0.035134137 0.047976494 prediction 0.493938676726203 Functional Loss - KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34291392 chr19:34291394 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_66320 0 0 1 0 2 KCTD15 chr19:34291425 5'GT 34291425 Upstream 32bp
chr1 32796425 32796425 1 + G T LUAD 32796422 + 32796402 32796442 41 TTAACCTGCCTATGCTGATGCTGGGAGGCGGTGGTTACACC TTAACCTGCCTATGCTGATGCTGTGAGGCGGTGGTTACACC < 41bp 0.746965607777753 0.352160880909272 0.81427884 0.45863202 prediction 0.493931215555506 Functional Loss - HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32796422 chr1:32796425 stopgain 1.000 1 24 hm5C_associated_SNPs_66321 0 0 1 0 2 HDAC1 chr1:32796369 3'AG 32796369 Downstream 57bp
chr1 32796425 32796425 1 + G T LUAD 32796422 + 32796402 32796442 41 TTAACCTGCCTATGCTGATGCTGGGAGGCGGTGGTTACACC TTAACCTGCCTATGCTGATGCTGTGAGGCGGTGGTTACACC < 41bp 0.746965607777753 0.352160880909272 0.81427884 0.45863202 prediction 0.493931215555506 Functional Loss - HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32796422 chr1:32796425 stopgain 1.000 1 24 hm5C_associated_SNPs_66321 0 0 1 0 2 HDAC1 chr1:32796509 5'GT 32796509 Upstream 85bp
chr17 32963157 32963157 1 + G C BLCA 32963153 + 32963133 32963173 41 CCTCTCCCTGCGGCCCAGCCCTGGGAGCAGCCACACCATCC CCTCTCCCTGCGGCCCAGCCCTGGCAGCAGCCACACCATCC < 41bp 0.833903423041224 0.586939391269312 0.6030253 0.3829373 prediction 0.493928063543824 Functional Loss - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32963153 chr17:32963157 synonymous SNV . 0 25 hm5C_associated_SNPs_66322 0 0 0 0 1 TMEM132E chr17:32963217 5'GT 32963217 Upstream 61bp
chr17 33496870 33496870 1 + C T rs6505446 33496868 + 33496848 33496888 41 CTCCTCAGGGACTCTGTAAGCTCGGCTCTGCAGGTGGCACA CTCCTCAGGGACTCTGTAAGCTTGGCTCTGCAGGTGGCACA < 41bp 0.813010934343069 0.566053670431085 0.27379733 0.2118581 prediction 0.493914527823967 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33496868 chr17:33496870 synonymous SNV . 0 23 hm5C_associated_SNPs_66325 0 0 0 0 2 UNC45B chr17:33496856 3'AG 33496856 Downstream 15bp
chr17 33496870 33496870 1 + C T rs6505446 33496868 + 33496848 33496888 41 CTCCTCAGGGACTCTGTAAGCTCGGCTCTGCAGGTGGCACA CTCCTCAGGGACTCTGTAAGCTTGGCTCTGCAGGTGGCACA < 41bp 0.813010934343069 0.566053670431085 0.27379733 0.2118581 prediction 0.493914527823967 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33496868 chr17:33496870 synonymous SNV . 0 23 hm5C_associated_SNPs_66325 0 0 0 0 2 UNC45B chr17:33496950 5'GT 33496950 Upstream 81bp
chr6 43412049 43412049 1 + G A SKCM 43412046 + 43412026 43412066 41 CTTACTGGAAGGCCGTGGGCCAGGGCTTGGCCTTAGCCATC CTTACTGGAAGGCCGTGGGCCAGAGCTTGGCCTTAGCCATC < 41bp 0.753786645180348 0.506832093492006 0.84099054 0.33524072 prediction 0.493909103376684 Functional Loss - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43412046 chr6:43412049 nonsynonymous SNV 0.335 0 24 hm5C_associated_SNPs_66327 0 0 1 0 1 ABCC10 chr6:43412091 5'GT 43412091 Upstream 43bp
chr20 5897001 5897001 1 + A T LGG 5896997 + 5896977 5897017 41 AATTCCATGCCAGTGGATAACAGGAACCACAATGAAGGAAT AATTCCATGCCAGTGGATAACAGGTACCACAATGAAGGAAT < 41bp 0.860054217396847 0.613103677340192 0.502277 0.31928807 prediction 0.493901080113311 Functional Loss - CHGB ENSG00000089199 CDS Human protein_coding chr20:5896997 chr20:5897001 nonsynonymous SNV 0.991 1 25 hm5C_associated_SNPs_66330 0 0 0 0 2 CHGB chr20:5896972 3'AG 5896972 Downstream 30bp
chr20 5897001 5897001 1 + A T LGG 5896997 + 5896977 5897017 41 AATTCCATGCCAGTGGATAACAGGAACCACAATGAAGGAAT AATTCCATGCCAGTGGATAACAGGTACCACAATGAAGGAAT < 41bp 0.860054217396847 0.613103677340192 0.502277 0.31928807 prediction 0.493901080113311 Functional Loss - CHGB ENSG00000089199 CDS Human protein_coding chr20:5896997 chr20:5897001 nonsynonymous SNV 0.991 1 25 hm5C_associated_SNPs_66330 0 0 0 0 2 CHGB chr20:5897018 5'GT 5897018 Upstream 18bp
chr19 35418095 35418095 1 + G C rs56330896 35418094 + 35418074 35418114 41 GGAGCTCTGCAGACCTGTGTCGGCGCGGAACCCGGACTGAG GGAGCTCTGCAGACCTGTGTCCGCGCGGAACCCGGACTGAG < 41bp 0.746941910107661 0.468366175831401 0.90806097 0.8151996 prediction 0.493883820215321 Functional Loss - ZNF30 ENSG00000168661 UTR5 Human protein_coding chr19:35418094 chr19:35418095 . . 0 22 hm5C_associated_SNPs_66332 0 0 0 0 1 ZNF30 chr19:35418120 5'GT 35418120 Upstream 26bp
chr7 73969799 73969799 1 + G T LUSC 73969796 + 73969776 73969816 41 TCCGGGGACCCTCTGGTGGACGAGAGCCTGAAGAGACAGGG TCCGGGGACCCTCTGGTGGACGATAGCCTGAAGAGACAGGG < 41bp 0.74694128631174 0.349865612378892 0.4239617 0.22253594 prediction 0.49388257262348 Functional Loss - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73969796 chr7:73969799 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_66333 0 0 1 0 3 GTF2IRD1 chr7:73969723 3'AG 73969723 Downstream 77bp
chr7 73969799 73969799 1 + G T LUSC 73969796 + 73969776 73969816 41 TCCGGGGACCCTCTGGTGGACGAGAGCCTGAAGAGACAGGG TCCGGGGACCCTCTGGTGGACGATAGCCTGAAGAGACAGGG < 41bp 0.74694128631174 0.349865612378892 0.4239617 0.22253594 prediction 0.49388257262348 Functional Loss - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73969796 chr7:73969799 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_66333 0 0 1 0 3 GTF2IRD1 chr7:73969768 3'AG 73969768 Downstream 32bp
chr7 73969799 73969799 1 + G T LUSC 73969796 + 73969776 73969816 41 TCCGGGGACCCTCTGGTGGACGAGAGCCTGAAGAGACAGGG TCCGGGGACCCTCTGGTGGACGATAGCCTGAAGAGACAGGG < 41bp 0.74694128631174 0.349865612378892 0.4239617 0.22253594 prediction 0.49388257262348 Functional Loss - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73969796 chr7:73969799 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_66333 0 0 1 0 3 GTF2IRD1 chr7:73969824 5'GT 73969824 Upstream 26bp
chrX 135618368 135618368 1 + G T LUAD 135618366 + 135618346 135618386 41 AGGAATTGACCCCCTCGAGTCAGAGTGAAGGTGTGATGCTG AGGAATTGACCCCCTCGAGTCATAGTGAAGGTGTGATGCTG < 41bp 0.746940678129874 0.38882929269762 0.6347375 0.13929659 prediction 0.493881356259749 Functional Loss - VGLL1 ENSG00000102243 CDS Human protein_coding chrX:135618366 chrX:135618368 nonsynonymous SNV 0.009 0 23 hm5C_associated_SNPs_66334 0 0 0 0 1 VGLL1 chrX:135618393 5'GT 135618393 Upstream 26bp
chr1 46976227 46976227 1 + C T SKCM 46976225 + 46976205 46976245 41 CAGCGTTCACGGCTCAGCAGCTCGAGGCCCTGGAAAAGACC CAGCGTTCACGGCTCAGCAGCTTGAGGCCCTGGAAAAGACC < 41bp 0.746940321965235 0.461885823717549 0.28076923 0.20488751 prediction 0.493880643930471 Functional Loss - DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46976225 chr1:46976227 synonymous SNV . 0 23 hm5C_associated_SNPs_66335 0 0 0 0 2 DMBX1 chr1:46976148 3'AG 46976148 Downstream 80bp
chr1 46976227 46976227 1 + C T SKCM 46976225 + 46976205 46976245 41 CAGCGTTCACGGCTCAGCAGCTCGAGGCCCTGGAAAAGACC CAGCGTTCACGGCTCAGCAGCTTGAGGCCCTGGAAAAGACC < 41bp 0.746940321965235 0.461885823717549 0.28076923 0.20488751 prediction 0.493880643930471 Functional Loss - DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46976225 chr1:46976227 synonymous SNV . 0 23 hm5C_associated_SNPs_66335 0 0 0 0 2 DMBX1 chr1:46976326 5'GT 46976326 Upstream 100bp
chr15 85478411 85478411 1 + G A SKCM 85478408 + 85478388 85478428 41 TGGGAGACATGGTGGACATCCAAGGGCTCAGCTTCCAGGTG TGGGAGACATGGTGGACATCCAAAGGCTCAGCTTCCAGGTG < 41bp 0.762652965588349 0.515719851333839 0.92653084 0.85297245 prediction 0.493866228509022 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85478408 chr15:85478411 nonsynonymous SNV 0.153 0 24 hm5C_associated_SNPs_66336 0 0 0 0 1 SLC28A1 chr15:85478425 5'GT 85478425 Upstream 15bp
chr1 158225042 158225042 1 + G T LUAD 158225040 + 158225020 158225060 41 CCCTGGTCCAGGGGAAACTTCAGCAATGAGGAGTGGAAGGA CCCTGGTCCAGGGGAAACTTCATCAATGAGGAGTGGAAGGA < 41bp 0.880270534988647 0.633343571383805 0.39756817 0.15115923 prediction 0.493853927209683 Functional Loss - CD1A ENSG00000158477 CDS Human protein_coding chr1:158225040 chr1:158225042 nonsynonymous SNV 0.053 3 23 hm5C_associated_SNPs_66338 0 0 0 0 1 CD1A chr1:158225140 5'GT 158225140 Upstream 99bp
chr17 76490185 76490185 1 + A C CESC 76490181 + 76490161 76490201 41 TGGCGGACCTGCAGCAGCTCCTCCAGCTGCACCACCTTCAG TGGCGGACCTGCAGCAGCTCCTCCCGCTGCACCACCTTCAG < 41bp 0.746921175513237 0.305475857038878 0.93109685 0.31662166 prediction 0.493842351026475 Functional Loss - DNAH17 ENSG00000187775 CDS Human processed_transcript chr17:76490181 chr17:76490185 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_66340 0 0 0 0 2 DNAH17-AS1 chr17:76490096 3'AG 76490096 Downstream 90bp
chr17 76490185 76490185 1 + A C CESC 76490181 + 76490161 76490201 41 TGGCGGACCTGCAGCAGCTCCTCCAGCTGCACCACCTTCAG TGGCGGACCTGCAGCAGCTCCTCCCGCTGCACCACCTTCAG < 41bp 0.746921175513237 0.305475857038878 0.93109685 0.31662166 prediction 0.493842351026475 Functional Loss - DNAH17 ENSG00000187775 CDS Human processed_transcript chr17:76490181 chr17:76490185 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_66340 0 0 0 0 2 DNAH17-AS1 chr17:76490279 5'GT 76490279 Upstream 95bp
chr6 126342315 126342315 1 + A T SKCM 126342311 + 126342291 126342331 41 CTGTTCTTTCTTCAGATACACTGAAGAGATGGTGCCTTGGC CTGTTCTTTCTTCAGATACACTGATGAGATGGTGCCTTGGC < 41bp 0.746914838854541 0.428074597166804 0.10919982 0.1850495 prediction 0.493829677709082 Functional Loss - TRMT11 ENSG00000066651 CDS Human protein_coding chr6:126342311 chr6:126342315 nonsynonymous SNV 0.975 2 25 hm5C_associated_SNPs_66344 0 0 1 2 2 TRMT11 chr6:126342306 3'AG 126342306 Downstream 10bp
chr6 126342315 126342315 1 + A T SKCM 126342311 + 126342291 126342331 41 CTGTTCTTTCTTCAGATACACTGAAGAGATGGTGCCTTGGC CTGTTCTTTCTTCAGATACACTGATGAGATGGTGCCTTGGC < 41bp 0.746914838854541 0.428074597166804 0.10919982 0.1850495 prediction 0.493829677709082 Functional Loss - TRMT11 ENSG00000066651 CDS Human protein_coding chr6:126342311 chr6:126342315 nonsynonymous SNV 0.975 2 25 hm5C_associated_SNPs_66344 0 0 1 2 2 TRMT11 chr6:126342411 5'GT 126342411 Upstream 97bp
chr8 23112792 23112792 1 + G T UCEC 23112790 + 23112770 23112810 41 AGGAGGTGTATCGTCTGTATCAGAACTCGCCCCTCTCCTCC AGGAGGTGTATCGTCTGTATCATAACTCGCCCCTCTCCTCC < 41bp 0.897188992202145 0.650274455445015 0.9379941 0.25349727 prediction 0.49382907351426 Functional Loss - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23112790 chr8:23112792 nonsynonymous SNV 0.992 2 23 hm5C_associated_SNPs_66345 0 0 1 1 1 CHMP7 chr8:23112760 3'AG 23112760 Downstream 33bp
chr17 28887185 28887185 1 + G A rs9900264 28887182 + 28887162 28887202 41 TCCTCATTCAGCTGGCTTCTCCGGGTGCTGAATGATGGGGT TCCTCATTCAGCTGGCTTCTCCGAGTGCTGAATGATGGGGT < 41bp 0.756338432794036 0.509425636467206 0.92559075 0.88503385 prediction 0.493825592653661 Functional Loss - TBC1D29 ENSG00000266733 CDS Human protein_coding chr17:28887182 chr17:28887185 synonymous SNV . 0 24 hm5C_associated_SNPs_66346 0 0 0 0 2 TBC1D29 chr17:28887135 3'AG 28887135 Downstream 51bp
chr17 28887185 28887185 1 + G A rs9900264 28887182 + 28887162 28887202 41 TCCTCATTCAGCTGGCTTCTCCGGGTGCTGAATGATGGGGT TCCTCATTCAGCTGGCTTCTCCGAGTGCTGAATGATGGGGT < 41bp 0.756338432794036 0.509425636467206 0.92559075 0.88503385 prediction 0.493825592653661 Functional Loss - TBC1D29 ENSG00000266733 CDS Human protein_coding chr17:28887182 chr17:28887185 synonymous SNV . 0 24 hm5C_associated_SNPs_66346 0 0 0 0 2 TBC1D29 chr17:28887200 5'GT 28887200 Upstream 16bp
chr20 57598640 57598640 1 + G C LAML 57598639 + 57598619 57598659 41 TTAGGAGCTCTCTTTCAACCCGACAGTTTTGTCCATGGTAT TTAGGAGCTCTCTTTCAACCCCACAGTTTTGTCCATGGTAT < 41bp 0.746908967780117 0.436555935062277 0.048223644 0.050563365 prediction 0.493817935560234 Functional Loss - TUBB1 ENSG00000101162 CDS Human protein_coding chr20:57598639 chr20:57598640 nonsynonymous SNV 0.303 4 22 hm5C_associated_SNPs_66347 0 0 1 0 2 TUBB1 chr20:57598545 3'AG 57598545 Downstream 96bp
chr20 57598640 57598640 1 + G C LAML 57598639 + 57598619 57598659 41 TTAGGAGCTCTCTTTCAACCCGACAGTTTTGTCCATGGTAT TTAGGAGCTCTCTTTCAACCCCACAGTTTTGTCCATGGTAT < 41bp 0.746908967780117 0.436555935062277 0.048223644 0.050563365 prediction 0.493817935560234 Functional Loss - TUBB1 ENSG00000101162 CDS Human protein_coding chr20:57598639 chr20:57598640 nonsynonymous SNV 0.303 4 22 hm5C_associated_SNPs_66347 0 0 1 0 2 TUBB1 chr20:57598655 5'GT 57598655 Upstream 16bp
chr3 186289915 186289915 1 + C T UCEC 186289913 + 186289893 186289933 41 CTATAAGATCTTGGGGGTGCCTCGAAGTGCCTCTATAAAGG CTATAAGATCTTGGGGGTGCCTTGAAGTGCCTCTATAAAGG < 41bp 0.84125338392932 0.594352071961719 0.87525165 0.05218509 prediction 0.4938026239352 Functional Loss - DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186289913 chr3:186289915 stopgain 1.000 1 23 hm5C_associated_SNPs_66350 0 0 1 0 1 DNAJB11 chr3:186289884 3'AG 186289884 Downstream 32bp
chr11 5013345 5013345 1 + G T UCEC 5013343 + 5013323 5013363 41 CCGATGATATCCAAAGGATCCAGCATTTGTATGGTCTGTGC CCGATGATATCCAAAGGATCCATCATTTGTATGGTCTGTGC < 41bp 0.872558714705054 0.625658205269595 0.06904298 0.044475377 prediction 0.493801018870919 Functional Loss - MMP26 ENSG00000167346 CDS Human protein_coding chr11:5013343 chr11:5013345 nonsynonymous SNV 0.104 4 23 hm5C_associated_SNPs_66351 0 0 0 0 1 MMP26 chr11:5013355 5'GT 5013355 Upstream 11bp
chr22 42475888 42475888 1 + G A GBM 42475885 + 42475865 42475905 41 CTCCGCCGCATGGAGCGGCTCAGGCCGGAGCCTGGTACCGT CTCCGCCGCATGGAGCGGCTCAGACCGGAGCCTGGTACCGT < 41bp 0.747727425958802 0.500828137872535 0.5732841 0.2803704 prediction 0.493798576172535 Functional Loss - SMDT1 ENSG00000183172 CDS Human protein_coding chr22:42475885 chr22:42475888 nonsynonymous SNV 0.033 0 24 hm5C_associated_SNPs_66352 0 0 1 0 1 SMDT1 chr22:42475958 5'GT 42475958 Upstream 71bp
chr9 43709726 43709726 1 + C T rs542977690 43709724 + 43709704 43709744 41 CCTCAGAGCTGTCCAGCAGCCACGGCCCGGGGTTTTCAAGG CCTCAGAGCTGTCCAGCAGCCATGGCCCGGGGTTTTCAAGG < 41bp 0.746889789615681 0.468557340591662 0.2789567 0.18319952 prediction 0.493779579231362 Functional Loss - CNTNAP3B ENSG00000154529 CDS Human protein_coding chr9:43709724 chr9:43709726 synonymous SNV . 0 23 hm5C_associated_SNPs_66354 0 0 0 0 2 CNTNAP3B chr9:43709650 3'AG 43709650 Downstream 77bp
chr9 43709726 43709726 1 + C T rs542977690 43709724 + 43709704 43709744 41 CCTCAGAGCTGTCCAGCAGCCACGGCCCGGGGTTTTCAAGG CCTCAGAGCTGTCCAGCAGCCATGGCCCGGGGTTTTCAAGG < 41bp 0.746889789615681 0.468557340591662 0.2789567 0.18319952 prediction 0.493779579231362 Functional Loss - CNTNAP3B ENSG00000154529 CDS Human protein_coding chr9:43709724 chr9:43709726 synonymous SNV . 0 23 hm5C_associated_SNPs_66354 0 0 0 0 2 CNTNAP3B chr9:43709760 5'GT 43709760 Upstream 35bp
chr11 65107973 65107973 1 + G T UCEC 65107970 + 65107950 65107990 41 GACTCACAGACCGGAGTAGCCCAGAGCAATTGTTACATCTG GACTCACAGACCGGAGTAGCCCATAGCAATTGTTACATCTG < 41bp 0.746870330456612 0.351468756490503 0.78534615 0.21298364 prediction 0.493740660913223 Functional Loss - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65107970 chr11:65107973 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_66361 0 0 1 0 1 DPF2 chr11:65108016 5'GT 65108016 Upstream 44bp
chr22 40356136 40356136 1 + G T LUAD 40356134 + 40356114 40356154 41 GAGGTTGGCTTCTTCATCATCCGGGCCAGCCAGAGCTCCCC GAGGTTGGCTTCTTCATCATCCTGGCCAGCCAGAGCTCCCC < 41bp 0.746866693578748 0.394399048517228 0.7660941 0.14876464 prediction 0.493733387157496 Functional Loss - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40356134 chr22:40356136 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_66362 0 0 0 0 2 GRAP2 chr22:40356059 3'AG 40356059 Downstream 78bp
chr22 40356136 40356136 1 + G T LUAD 40356134 + 40356114 40356154 41 GAGGTTGGCTTCTTCATCATCCGGGCCAGCCAGAGCTCCCC GAGGTTGGCTTCTTCATCATCCTGGCCAGCCAGAGCTCCCC < 41bp 0.746866693578748 0.394399048517228 0.7660941 0.14876464 prediction 0.493733387157496 Functional Loss - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40356134 chr22:40356136 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_66362 0 0 0 0 2 GRAP2 chr22:40356178 5'GT 40356178 Upstream 43bp
chr17 16326005 16326005 1 + A C rs1129235 16326004 + 16325984 16326024 41 CTGCCACTGCTGCAGATCGACAGGGACTCTGGCAATCCTCA CTGCCACTGCTGCAGATCGACCGGGACTCTGGCAATCCTCA < 41bp 0.746854235940435 0.476908523793594 0.8304734 0.40107495 prediction 0.49370847188087 Functional Loss - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16326004 chr17:16326005 synonymous SNV . 0 22 hm5C_associated_SNPs_66366 0 0 0 0 1 TRPV2 chr17:16325913 3'AG 16325913 Downstream 93bp
chr1 92604962 92604962 1 + G T HNSC 92604959 + 92604939 92604979 41 ATTTTATATATGGAGGAACTCTGGACATTCCAGACAAAACT ATTTTATATATGGAGGAACTCTGTACATTCCAGACAAAACT < 41bp 0.746847576062551 0.38900168982491 0.039329857 0.09123355 prediction 0.493695152125103 Functional Loss - BTBD8 ENSG00000189195 CDS Human protein_coding chr1:92604959 chr1:92604962 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_66368 0 0 0 3 2 BTBD8 chr1:92604907 3'AG 92604907 Downstream 56bp
chr1 92604962 92604962 1 + G T HNSC 92604959 + 92604939 92604979 41 ATTTTATATATGGAGGAACTCTGGACATTCCAGACAAAACT ATTTTATATATGGAGGAACTCTGTACATTCCAGACAAAACT < 41bp 0.746847576062551 0.38900168982491 0.039329857 0.09123355 prediction 0.493695152125103 Functional Loss - BTBD8 ENSG00000189195 CDS Human protein_coding chr1:92604959 chr1:92604962 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_66368 0 0 0 3 2 BTBD8 chr1:92604987 5'GT 92604987 Upstream 26bp
chr15 84159641 84159641 1 + G T LUSC 84159639 + 84159619 84159659 41 CAAGCTAATAGGTGCCTTACCTGGACCTCCCAACAGGTAAT CAAGCTAATAGGTGCCTTACCTTGACCTCCCAACAGGTAAT < 41bp 0.746840116693531 0.418163697336476 0.8699882 0.33599246 prediction 0.493680233387063 Functional Loss - SH3GL3 ENSG00000140600 CDS Human protein_coding chr15:84159639 chr15:84159641 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_66369 0 0 0 0 1 SH3GL3 chr15:84159654 5'GT 84159654 Upstream 14bp
chr15 84159642 84159642 1 + G T LUSC 84159639 + 84159619 84159659 41 CAAGCTAATAGGTGCCTTACCTGGACCTCCCAACAGGTAAT CAAGCTAATAGGTGCCTTACCTGTACCTCCCAACAGGTAAT < 41bp 0.746840116693531 0.369905050280064 0.8699882 0.29044706 prediction 0.493680233387063 Functional Loss - SH3GL3 ENSG00000140600 CDS Human protein_coding chr15:84159639 chr15:84159642 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_66370 0 0 0 0 1 SH3GL3 chr15:84159654 5'GT 84159654 Upstream 13bp
chr6 41010825 41010825 1 + C T LUSC 41010823 + 41010803 41010843 41 ATGTCTGGTTGGTGTGAGGGCCCGAGGATGCTGTCCTGGTG ATGTCTGGTTGGTGTGAGGGCCTGAGGATGCTGTCCTGGTG < 41bp 0.773561491917091 0.526727039220888 0.30675352 0.3158582 prediction 0.493668905392406 Functional Loss - TSPO2 ENSG00000112212 CDS Human protein_coding chr6:41010823 chr6:41010825 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_66372 0 0 0 0 1 TSPO2 chr6:41010897 5'GT 41010897 Upstream 73bp
chr5 1217022 1217022 1 + G A UCEC 1217019 + 1216999 1217039 41 ACCCCGCGGCCTACGCGCAGCTGGTGTTCCAGACCTGCGAC ACCCCGCGGCCTACGCGCAGCTGATGTTCCAGACCTGCGAC < 41bp 0.755559197157921 0.508726077278345 0.31141597 0.2604215 prediction 0.493666239759151 Functional Loss - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1217019 chr5:1217022 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_66374 0 0 0 0 1 SLC6A19 chr5:1217060 5'GT 1217060 Upstream 39bp
chr22 44527436 44527436 1 + T C UCEC 44527435 + 44527415 44527455 41 AAATAGGGCAGAAACAGAAGCTGCAGACGGTGCTGGAAGCA AAATAGGGCAGAAACAGAAGCCGCAGACGGTGCTGGAAGCA < 41bp 0.746818346152276 0.488180966693047 0.27272373 0.23052102 prediction 0.493636692304552 Functional Loss - PARVB ENSG00000188677 CDS Human protein_coding chr22:44527435 chr22:44527436 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_66380 0 0 1 0 2 PARVB chr22:44527367 3'AG 44527367 Downstream 70bp
chr22 44527436 44527436 1 + T C UCEC 44527435 + 44527415 44527455 41 AAATAGGGCAGAAACAGAAGCTGCAGACGGTGCTGGAAGCA AAATAGGGCAGAAACAGAAGCCGCAGACGGTGCTGGAAGCA < 41bp 0.746818346152276 0.488180966693047 0.27272373 0.23052102 prediction 0.493636692304552 Functional Loss - PARVB ENSG00000188677 CDS Human protein_coding chr22:44527435 chr22:44527436 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_66380 0 0 1 0 2 PARVB chr22:44527507 5'GT 44527507 Upstream 72bp
chr10 18242431 18242431 1 + C T STAD 18242429 + 18242409 18242449 41 GTTGGAGAAAACTGGGTGCCCACGGAGGAGAAACGGAATGC GTTGGAGAAAACTGGGTGCCCATGGAGGAGAAACGGAATGC < 41bp 0.781412310372585 0.534599033039532 0.6586053 0.451494 prediction 0.493626554666106 Functional Loss - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18242429 chr10:18242431 nonsynonymous SNV 0.981 2 23 hm5C_associated_SNPs_66381 0 0 0 0 1 SLC39A12 chr10:18242466 5'GT 18242466 Upstream 36bp
chr17 34171535 34171535 1 + G T LUAD 34171533 + 34171513 34171553 41 GGCTACAGAGGTCGTGGGGGCAGAGGTGGAGACCGAGGCGG GGCTACAGAGGTCGTGGGGGCATAGGTGGAGACCGAGGCGG < 41bp 0.895715797759327 0.648911973122726 0.8981389 0.8697816 prediction 0.493607649273202 Functional Loss - TAF15 ENSG00000172660 CDS Human other chr17:34171533 chr17:34171535 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_66383 0 0 1 0 1 TAF15 chr17:34171481 3'AG 34171481 Downstream 55bp
chr9 95766411 95766411 1 + G T LUSC 95766408 + 95766388 95766428 41 CCGGAGCTGAAGACGCGGATCACGGAGGAGTGGTGAGTACC CCGGAGCTGAAGACGCGGATCACTGAGGAGTGGTGAGTACC < 41bp 0.746792192713758 0.342987172445188 0.8882961 0.27800477 prediction 0.493584385427516 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95766408 chr9:95766411 synonymous SNV . 0 24 hm5C_associated_SNPs_66385 0 0 0 0 1 FGD3 chr9:95766419 5'GT 95766419 Upstream 9bp
chr9 140507481 140507481 1 + G A rs76318189 140507478 + 140507458 140507498 41 GGTAAGTTTGGGAGCCAGTTCCCGAGTGGTGACCCCTGGGG GGTAAGTTTGGGAGCCAGTTCCCAAGTGGTGACCCCTGGGG < 41bp 0.757015921429819 0.510225626110383 0.75004303 0.30308777 prediction 0.493580590638872 Functional Loss - ARRDC1 ENSG00000197070 CDS Human protein_coding chr9:140507478 chr9:140507481 synonymous SNV . 0 24 hm5C_associated_SNPs_66386 0 0 1 0 1 ARRDC1 chr9:140507458 3'AG 140507458 Downstream 24bp
chr1 28056791 28056791 1 + A C rs185534667 28056790 + 28056770 28056810 41 TCACTGCAACCTCCACCTCCCAGGTTCAAGCGATTCTCCTG TCACTGCAACCTCCACCTCCCCGGTTCAAGCGATTCTCCTG < 41bp 0.785808570412857 0.539021261848205 0.32889944 0.10384098 prediction 0.493574617129304 Functional Loss - FAM76A ENSG00000009780 CDS Human protein_coding chr1:28056790 chr1:28056791 synonymous SNV . 0 22 hm5C_associated_SNPs_66388 0 0 0 0 2 FAM76A chr1:28056743 3'AG 28056743 Downstream 49bp
chr1 28056791 28056791 1 + A C rs185534667 28056790 + 28056770 28056810 41 TCACTGCAACCTCCACCTCCCAGGTTCAAGCGATTCTCCTG TCACTGCAACCTCCACCTCCCCGGTTCAAGCGATTCTCCTG < 41bp 0.785808570412857 0.539021261848205 0.32889944 0.10384098 prediction 0.493574617129304 Functional Loss - FAM76A ENSG00000009780 CDS Human protein_coding chr1:28056790 chr1:28056791 synonymous SNV . 0 22 hm5C_associated_SNPs_66388 0 0 0 0 2 FAM76A chr1:28056844 5'GT 28056844 Upstream 54bp
chr2 95947085 95947085 1 + A C rs12992066 95947084 + 95947064 95947104 41 ACGTGCAGACGCTGGTGTGCCAGAGCTGGGAGAACGGCGAG ACGTGCAGACGCTGGTGTGCCCGAGCTGGGAGAACGGCGAG < 41bp 0.773268285663374 0.526486485816178 0.88686717 0.38802984 prediction 0.493563599694391 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95947084 chr2:95947085 nonsynonymous SNV 0.788 1 22 hm5C_associated_SNPs_66389 0 0 0 0 2 PROM2 chr2:95946990 3'AG 95946990 Downstream 96bp
chr2 95947085 95947085 1 + A C rs12992066 95947084 + 95947064 95947104 41 ACGTGCAGACGCTGGTGTGCCAGAGCTGGGAGAACGGCGAG ACGTGCAGACGCTGGTGTGCCCGAGCTGGGAGAACGGCGAG < 41bp 0.773268285663374 0.526486485816178 0.88686717 0.38802984 prediction 0.493563599694391 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95947084 chr2:95947085 nonsynonymous SNV 0.788 1 22 hm5C_associated_SNPs_66389 0 0 0 0 2 PROM2 chr2:95947113 5'GT 95947113 Upstream 29bp
chr2 45170049 45170049 1 + G T STAD 45170047 + 45170027 45170067 41 CGCGCCGCGGCGGCCAAGAACAGGTTAGTGGCGGGGCCCGC CGCGCCGCGGCGGCCAAGAACATGTTAGTGGCGGGGCCCGC < 41bp 0.894591989339749 0.64781091362659 0.89903325 0.46752086 prediction 0.493562151426318 Functional Loss - SIX3 ENSG00000138083 CDS Human protein_coding chr2:45170047 chr2:45170049 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_66392 0 0 0 0 1 SIX3 chr2:45170049 5'GT 45170049 Upstream 1bp
chr5 118728655 118728655 1 + G T LUSC 118728653 + 118728633 118728673 41 GATGAGCTCTACAGAGTGACCAGGGAGTACACCCAAAACAA GATGAGCTCTACAGAGTGACCATGGAGTACACCCAAAACAA < 41bp 0.874566766169237 0.627794252111754 0.89914906 0.054258436 prediction 0.493545028114964 Functional Loss - TNFAIP8 ENSG00000145779 CDS Human protein_coding chr5:118728653 chr5:118728655 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_66394 0 0 1 0 1 TNFAIP8 chr5:118728647 3'AG 118728647 Downstream 9bp
chr16 24888628 24888628 1 + A C COAD 24888624 + 24888604 24888644 41 TCATCCAGCAGTCTTTGCACCTGGATCTGTACCTGGCCATA TCATCCAGCAGTCTTTGCACCTGGCTCTGTACCTGGCCATA < 41bp 0.746765435643803 0.323825941010425 0.6502621 0.5587577 prediction 0.493530871287605 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24888624 chr16:24888628 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_66395 0 0 0 0 2 SLC5A11 chr16:24888579 3'AG 24888579 Downstream 50bp
chr16 24888628 24888628 1 + A C COAD 24888624 + 24888604 24888644 41 TCATCCAGCAGTCTTTGCACCTGGATCTGTACCTGGCCATA TCATCCAGCAGTCTTTGCACCTGGCTCTGTACCTGGCCATA < 41bp 0.746765435643803 0.323825941010425 0.6502621 0.5587577 prediction 0.493530871287605 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24888624 chr16:24888628 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_66395 0 0 0 0 2 SLC5A11 chr16:24888684 5'GT 24888684 Upstream 57bp
chr16 24888626 24888626 1 + G T LUSC 24888624 + 24888604 24888644 41 TCATCCAGCAGTCTTTGCACCTGGATCTGTACCTGGCCATA TCATCCAGCAGTCTTTGCACCTTGATCTGTACCTGGCCATA < 41bp 0.746765435643803 0.398885375285503 0.6502621 0.08459452 prediction 0.493530871287605 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24888624 chr16:24888626 synonymous SNV . 0 23 hm5C_associated_SNPs_66396 0 0 0 0 2 SLC5A11 chr16:24888579 3'AG 24888579 Downstream 48bp
chr16 24888626 24888626 1 + G T LUSC 24888624 + 24888604 24888644 41 TCATCCAGCAGTCTTTGCACCTGGATCTGTACCTGGCCATA TCATCCAGCAGTCTTTGCACCTTGATCTGTACCTGGCCATA < 41bp 0.746765435643803 0.398885375285503 0.6502621 0.08459452 prediction 0.493530871287605 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24888624 chr16:24888626 synonymous SNV . 0 23 hm5C_associated_SNPs_66396 0 0 0 0 2 SLC5A11 chr16:24888684 5'GT 24888684 Upstream 59bp
chr11 63719959 63719959 1 + C T UCEC 63719957 + 63719937 63719977 41 GACCGAGCCTGGTACCTCATCGCGTGGGAAAACAGCTCCGT GACCGAGCCTGGTACCTCATCGTGTGGGAAAACAGCTCCGT < 41bp 0.811876267788845 0.565112137797677 0.56567657 0.45420247 prediction 0.493528259982336 Functional Loss - NAA40 ENSG00000110583 CDS Human protein_coding chr11:63719957 chr11:63719959 nonsynonymous SNV 0.978 3 23 hm5C_associated_SNPs_66397 0 0 1 0 2 NAA40 chr11:63719879 3'AG 63719879 Downstream 81bp
chr11 63719959 63719959 1 + C T UCEC 63719957 + 63719937 63719977 41 GACCGAGCCTGGTACCTCATCGCGTGGGAAAACAGCTCCGT GACCGAGCCTGGTACCTCATCGTGTGGGAAAACAGCTCCGT < 41bp 0.811876267788845 0.565112137797677 0.56567657 0.45420247 prediction 0.493528259982336 Functional Loss - NAA40 ENSG00000110583 CDS Human protein_coding chr11:63719957 chr11:63719959 nonsynonymous SNV 0.978 3 23 hm5C_associated_SNPs_66397 0 0 1 0 2 NAA40 chr11:63720037 5'GT 63720037 Upstream 79bp
chr3 121613396 121613396 1 + C T SKCM 121613394 + 121613374 121613414 41 CTCCATTGAAGAGGTACCACCTCGACCACCTAGCCCTCCAA CTCCATTGAAGAGGTACCACCTTGACCACCTAGCCCTCCAA < 41bp 0.774717146272799 0.527958909199995 0.8902575 0.13517249 prediction 0.493516474145609 Functional Loss - SLC15A2 ENSG00000163406 CDS Human protein_coding chr3:121613394 chr3:121613396 stopgain 0.082 0 23 hm5C_associated_SNPs_66398 0 0 0 0 1 SLC15A2 chr3:121613428 5'GT 121613428 Upstream 33bp
chr17 35297654 35297654 1 + C T UCEC 35297652 + 35297632 35297672 41 TAGCGACCTGGTGCGGAGAGCGCGGAGCAAAGTGTTTCACC TAGCGACCTGGTGCGGAGAGCGTGGAGCAAAGTGTTTCACC < 41bp 0.792518394026312 0.545760930354822 0.9036833 0.73009783 prediction 0.493514927342981 Functional Loss - LHX1 ENSG00000132130 CDS Human other chr17:35297652 chr17:35297654 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_66399 0 0 0 0 1 LHX1 chr17:35297587 3'AG 35297587 Downstream 68bp
chr2 219619051 219619051 1 + G T UCEC 219619048 + 219619028 219619068 41 CAAGTGCTCTGGGCAGACTTCAAGACTTTCTGCTTCCTCCA CAAGTGCTCTGGGCAGACTTCAATACTTTCTGCTTCCTCCA < 41bp 0.746756870081834 0.360910582767045 0.40706095 0.17098057 prediction 0.493513740163668 Functional Loss - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219619048 chr2:219619051 nonsynonymous SNV 0.103 1 24 hm5C_associated_SNPs_66400 0 0 1 0 1 TTLL4 chr2:219618954 3'AG 219618954 Downstream 98bp
chr14 93151468 93151468 1 + G A HNSC 93151465 + 93151445 93151485 41 GAGCGCCGGCGTACTCTCAACAAGGCCCGGGCCTCCCGCTC GAGCGCCGGCGTACTCTCAACAAAGCCCGGGCCTCCCGCTC < 41bp 0.747355659822049 0.50060439708596 0.46323276 0.16312245 prediction 0.493502525472177 Functional Loss - RIN3 ENSG00000100599 CDS Human protein_coding chr14:93151465 chr14:93151468 synonymous SNV . 0 24 hm5C_associated_SNPs_66401 0 0 1 0 1 RIN3 chr14:93151495 5'GT 93151495 Upstream 28bp
chr19 33651337 33651337 1 + G T ESCA 33651335 + 33651315 33651355 41 TGCAGGCTCTTTTCTCATTTCTGGAGGGTTTGATAGGACTG TGCAGGCTCTTTTCTCATTTCTTGAGGGTTTGATAGGACTG < 41bp 0.878660610579328 0.631911308910827 0.5243023 0.26493 prediction 0.493498603337003 Functional Loss - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33651335 chr19:33651337 stopgain 0.992 0 23 hm5C_associated_SNPs_66402 0 0 0 0 2 WDR88 chr19:33651320 3'AG 33651320 Downstream 18bp
chr19 33651337 33651337 1 + G T ESCA 33651335 + 33651315 33651355 41 TGCAGGCTCTTTTCTCATTTCTGGAGGGTTTGATAGGACTG TGCAGGCTCTTTTCTCATTTCTTGAGGGTTTGATAGGACTG < 41bp 0.878660610579328 0.631911308910827 0.5243023 0.26493 prediction 0.493498603337003 Functional Loss - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33651335 chr19:33651337 stopgain 0.992 0 23 hm5C_associated_SNPs_66402 0 0 0 0 2 WDR88 chr19:33651402 5'GT 33651402 Upstream 66bp
chr15 75188504 75188504 1 + A C UCEC 75188500 + 75188480 75188520 41 CTGTGACCCTCAGCGGCTGCCGGAAACAACATGGAGGACAT CTGTGACCCTCAGCGGCTGCCGGACACAACATGGAGGACAT < 41bp 0.746749256313971 0.342987903577999 0.90035564 0.8890523 prediction 0.493498512627943 Functional Loss - MPI ENSG00000178802 CDS Human protein_coding chr15:75188500 chr15:75188504 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_66403 0 0 1 0 1 MPI chr15:75188493 3'AG 75188493 Downstream 12bp
chr12 101012322 101012322 1 + G T UCEC 101012320 + 101012300 101012340 41 TCTGGGCCTGAAGATTCCATCAGCATTCCAAAATCATGCTG TCTGGGCCTGAAGATTCCATCATCATTCCAAAATCATGCTG < 41bp 0.880479088176651 0.633735439536446 0.1025638 0.027593672 prediction 0.49348729728041 Functional Loss - GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:101012320 chr12:101012322 nonsynonymous SNV 0.920 0 23 hm5C_associated_SNPs_66407 0 0 1 0 2 GAS2L3 chr12:101012227 3'AG 101012227 Downstream 96bp
chr12 101012322 101012322 1 + G T UCEC 101012320 + 101012300 101012340 41 TCTGGGCCTGAAGATTCCATCAGCATTCCAAAATCATGCTG TCTGGGCCTGAAGATTCCATCATCATTCCAAAATCATGCTG < 41bp 0.880479088176651 0.633735439536446 0.1025638 0.027593672 prediction 0.49348729728041 Functional Loss - GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:101012320 chr12:101012322 nonsynonymous SNV 0.920 0 23 hm5C_associated_SNPs_66407 0 0 1 0 2 GAS2L3 chr12:101012365 5'GT 101012365 Upstream 44bp
chr14 104198969 104198969 1 + G A UCEC 104198966 + 104198946 104198986 41 CTCTCCTCCAGGAGGCAACGCACGGGCCACAGGCATGTTCC CTCTCCTCCAGGAGGCAACGCACAGGCCACAGGCATGTTCC < 41bp 0.755148924271565 0.508412336815201 0.30838984 0.14940247 prediction 0.493473174912729 Functional Loss - ZFYVE21 ENSG00000100711 CDS Human protein_coding chr14:104198966 chr14:104198969 nonsynonymous SNV 0.782 3 24 hm5C_associated_SNPs_66410 0 0 1 1 1 ZFYVE21 chr14:104198957 3'AG 104198957 Downstream 13bp
chr15 43990230 43990230 1 + G T UCEC 43990227 + 43990207 43990247 41 CTCAGGTGGAGAGACTTATCCAAGAACGTGGCTGGGAGTTC CTCAGGTGGAGAGACTTATCCAATAACGTGGCTGGGAGTTC < 41bp 0.746733047188428 0.357524784186514 0.7311211 0.21833187 prediction 0.493466094376857 Functional Loss - CKMT1A ENSG00000223572 CDS Human protein_coding chr15:43990227 chr15:43990230 stopgain 0.887 1 24 hm5C_associated_SNPs_66411 0 0 0 0 1 CKMT1A chr15:43990212 3'AG 43990212 Downstream 19bp
chr7 150269342 150269342 1 + G T UCEC 150269340 + 150269320 150269360 41 AGTGTTTCATTCTGGCACTGCAGCAAAATCCATTACCAAGA AGTGTTTCATTCTGGCACTGCATCAAAATCCATTACCAAGA < 41bp 0.74672173956923 0.418923160721445 0.26228613 0.12973905 prediction 0.49344347913846 Functional Loss - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150269340 chr7:150269342 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_66415 0 0 0 0 1 GIMAP4 chr7:150269361 5'GT 150269361 Upstream 20bp
chr10 7839090 7839090 1 + C T UCEC 7839088 + 7839068 7839108 41 GGTAGCGGCAGCAAAATATGCCCGAGCTGAGAGAGAGCTGA GGTAGCGGCAGCAAAATATGCCTGAGCTGAGAGAGAGCTGA < 41bp 0.82408256598157 0.577361858519029 0.07185441 0.083432436 prediction 0.493441414925081 Functional Loss - ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7839088 chr10:7839090 stopgain 0.998 1 23 hm5C_associated_SNPs_66416 0 0 1 0 2 ATP5C1 chr10:7839010 3'AG 7839010 Downstream 81bp
chr10 7839090 7839090 1 + C T UCEC 7839088 + 7839068 7839108 41 GGTAGCGGCAGCAAAATATGCCCGAGCTGAGAGAGAGCTGA GGTAGCGGCAGCAAAATATGCCTGAGCTGAGAGAGAGCTGA < 41bp 0.82408256598157 0.577361858519029 0.07185441 0.083432436 prediction 0.493441414925081 Functional Loss - ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7839088 chr10:7839090 stopgain 0.998 1 23 hm5C_associated_SNPs_66416 0 0 1 0 2 ATP5C1 chr10:7839141 5'GT 7839141 Upstream 52bp
chr16 28911960 28911960 1 + C T UCEC 28911958 + 28911938 28911978 41 GACCCTCCGCGCAAGGAGGTCACGGGCTCCATCCAGCTGTG GACCCTCCGCGCAAGGAGGTCATGGGCTCCATCCAGCTGTG < 41bp 0.797104442762797 0.550390562085347 0.39467517 0.29443026 prediction 0.493427761354899 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28911958 chr16:28911960 nonsynonymous SNV 0.963 1 23 hm5C_associated_SNPs_66418 0 0 1 0 1 ATP2A1 chr16:28911902 3'AG 28911902 Downstream 59bp
chr11 63988497 63988497 1 + C T LGG 63988495 + 63988475 63988515 41 TATGGTCCCGCAGCTCACCCCACGGATCCTGGAAGCCCACC TATGGTCCCGCAGCTCACCCCATGGATCCTGGAAGCCCACC < 41bp 0.771889722037349 0.52517730148663 0.42306855 0.27945507 prediction 0.493424841101437 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63988495 chr11:63988497 nonsynonymous SNV 0.982 5 23 hm5C_associated_SNPs_66419 0 0 0 0 1 FERMT3 chr11:63988488 3'AG 63988488 Downstream 10bp
chr17 33497250 33497250 1 + G T rs139081277 33497248 + 33497228 33497268 41 TTGTCCAGGACGTCCCTGCCCTGCAGGCCATGTTTGAGCTG TTGTCCAGGACGTCCCTGCCCTTCAGGCCATGTTTGAGCTG < 41bp 0.890247113068061 0.643536257384751 0.058535814 0.05019623 prediction 0.493421711366619 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33497248 chr17:33497250 synonymous SNV . 0 23 hm5C_associated_SNPs_66420 0 0 0 0 1 UNC45B chr17:33497280 5'GT 33497280 Upstream 31bp
chr4 190862151 190862151 1 + A C rs200478293 190862147 + 190862127 190862167 41 CCGGCCTCAGCCTCTCCGCGCAGAAGTTTCCCGGAGCCATG CCGGCCTCAGCCTCTCCGCGCAGACGTTTCCCGGAGCCATG < 41bp 0.746699510395095 0.495611142399148 0.60925436 0.5296114 prediction 0.49339902079019 Functional Loss - FRG1 ENSG00000109536 UTR5 Human protein_coding chr4:190862147 chr4:190862151 . . 0 25 hm5C_associated_SNPs_66423 0 0 1 0 1 FRG1 chr4:190862226 5'GT 190862226 Upstream 76bp
chr17 4351514 4351514 1 + G A CESC 4351511 + 4351491 4351531 41 CCTGCTGGTTCCAGACCCACCCCGGGGAGCTGCCGAGACAC CCTGCTGGTTCCAGACCCACCCCAGGGAGCTGCCGAGACAC < 41bp 0.746689758238638 0.496215240596669 0.31908554 0.16902831 prediction 0.493379516477276 Functional Loss - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4351511 chr17:4351514 nonsynonymous SNV 0.711 3 24 hm5C_associated_SNPs_66426 0 0 0 0 2 SPNS3 chr17:4351450 3'AG 4351450 Downstream 65bp
chr17 4351514 4351514 1 + G A CESC 4351511 + 4351491 4351531 41 CCTGCTGGTTCCAGACCCACCCCGGGGAGCTGCCGAGACAC CCTGCTGGTTCCAGACCCACCCCAGGGAGCTGCCGAGACAC < 41bp 0.746689758238638 0.496215240596669 0.31908554 0.16902831 prediction 0.493379516477276 Functional Loss - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4351511 chr17:4351514 nonsynonymous SNV 0.711 3 24 hm5C_associated_SNPs_66426 0 0 0 0 2 SPNS3 chr17:4351598 5'GT 4351598 Upstream 85bp
chr5 153765930 153765930 1 + C T rs185134666 153765928 + 153765908 153765948 41 ATCGGAAGTGGTTCTGGGAACTCGGCGGGTATGACCCAGGC ATCGGAAGTGGTTCTGGGAACTTGGCGGGTATGACCCAGGC < 41bp 0.746687793281229 0.473405744827082 0.76454926 0.7069284 prediction 0.493375586562459 Functional Loss - GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153765928 chr5:153765930 synonymous SNV . 0 23 hm5C_associated_SNPs_66427 0 0 1 0 2 GALNT10 chr5:153765873 3'AG 153765873 Downstream 58bp
chr5 153765930 153765930 1 + C T rs185134666 153765928 + 153765908 153765948 41 ATCGGAAGTGGTTCTGGGAACTCGGCGGGTATGACCCAGGC ATCGGAAGTGGTTCTGGGAACTTGGCGGGTATGACCCAGGC < 41bp 0.746687793281229 0.473405744827082 0.76454926 0.7069284 prediction 0.493375586562459 Functional Loss - GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153765928 chr5:153765930 synonymous SNV . 0 23 hm5C_associated_SNPs_66427 0 0 1 0 2 GALNT10 chr5:153765990 5'GT 153765990 Upstream 61bp
chr2 238419296 238419296 1 + T C SKCM 238419295 + 238419275 238419315 41 GCCCATCTGAACGAGACCCACTGCGCCCGCTGCCTGCAGCC GCCCATCTGAACGAGACCCACCGCGCCCGCTGCCTGCAGCC < 41bp 0.768667755689341 0.521980420750098 0.3705365 0.10745448 prediction 0.493374669878487 Functional Loss - MLPH ENSG00000115648 CDS Human protein_coding chr2:238419295 chr2:238419296 nonsynonymous SNV 0.907 5 22 hm5C_associated_SNPs_66428 0 0 0 0 1 MLPH chr2:238419217 3'AG 238419217 Downstream 80bp
chr2 233407617 233407617 1 + C T SKCM 233407615 + 233407595 233407635 41 ATGGGGAGTGGGCCATCCAGCACCGACCAGCCAAGATGCTC ATGGGGAGTGGGCCATCCAGCATCGACCAGCCAAGATGCTC < 41bp 0.761690109365934 0.515005739536866 0.030614585 0.0762935 prediction 0.493368739658136 Functional Loss - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233407615 chr2:233407617 synonymous SNV . 0 23 hm5C_associated_SNPs_66429 0 0 0 0 1 CHRNG chr2:233407592 3'AG 233407592 Downstream 26bp
chr19 31025821 31025821 1 + G T LUAD 31025819 + 31025799 31025839 41 CGCTGCTTCGCGACAGAAGCCTGGGCTCGGCCATGAAGGAC CGCTGCTTCGCGACAGAAGCCTTGGCTCGGCCATGAAGGAC < 41bp 0.746684306008676 0.394576615257717 0.38667923 0.074894905 prediction 0.493368612017353 Functional Loss - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:31025819 chr19:31025821 synonymous SNV . 0 23 hm5C_associated_SNPs_66430 0 0 0 0 2 ZNF536 chr19:31025754 3'AG 31025754 Downstream 68bp
chr19 31025821 31025821 1 + G T LUAD 31025819 + 31025799 31025839 41 CGCTGCTTCGCGACAGAAGCCTGGGCTCGGCCATGAAGGAC CGCTGCTTCGCGACAGAAGCCTTGGCTCGGCCATGAAGGAC < 41bp 0.746684306008676 0.394576615257717 0.38667923 0.074894905 prediction 0.493368612017353 Functional Loss - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:31025819 chr19:31025821 synonymous SNV . 0 23 hm5C_associated_SNPs_66430 0 0 0 0 2 ZNF536 chr19:31025906 5'GT 31025906 Upstream 86bp
chr1 156621404 156621404 1 + C T HNSC 156621402 + 156621382 156621422 41 GAATCCCGTGGGGCCATCTACTCCATCCCCATCATGGAGGA GAATCCCGTGGGGCCATCTACTTCATCCCCATCATGGAGGA < 41bp 0.853506317039811 0.60682475451957 0.93534815 0.16405454 prediction 0.493363125040482 Functional Loss - BCAN ENSG00000132692 CDS Human protein_coding chr1:156621402 chr1:156621404 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_66431 0 0 0 0 1 BCAN chr1:156621481 5'GT 156621481 Upstream 78bp
chr10 43612056 43612056 1 + C T UCEC 43612054 + 43612034 43612074 41 GGATCCAAAGTGGGAATTCCCTCGGAAGAACTTGGTTCTTG GGATCCAAAGTGGGAATTCCCTTGGAAGAACTTGGTTCTTG < 41bp 0.746680307061957 0.463972459803161 0.075849295 0.11697036 prediction 0.493360614123914 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43612054 chr10:43612056 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_66432 0 0 1 0 1 RET chr10:43612032 3'AG 43612032 Downstream 25bp
chr8 99139948 99139948 1 + G T LUSC 99139946 + 99139926 99139966 41 AAAAAAGGGAGGATGGAAAGCAGGTCCCGAGGGCACGTCTC AAAAAAGGGAGGATGGAAAGCATGTCCCGAGGGCACGTCTC < 41bp 0.746677461766832 0.386603619587125 0.3684259 0.037195563 prediction 0.493354923533663 Functional Loss - POP1 ENSG00000104356 CDS Human protein_coding chr8:99139946 chr8:99139948 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_66433 0 0 0 0 1 POP1 chr8:99139990 5'GT 99139990 Upstream 43bp
chr2 69034467 69034467 1 + G A GBM 69034464 + 69034444 69034484 41 AACAGAAATTCGGCCCCCATCTGGTGCCCATCCTGGTGGAG AACAGAAATTCGGCCCCCATCTGATGCCCATCCTGGTGGAG < 41bp 0.749744889601947 0.503069454292311 0.21953598 0.21097228 prediction 0.493350870619271 Functional Loss - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69034464 chr2:69034467 stopgain 0.971 4 24 hm5C_associated_SNPs_66434 0 0 0 0 2 ARHGAP25 chr2:69034405 3'AG 69034405 Downstream 63bp
chr2 69034467 69034467 1 + G A GBM 69034464 + 69034444 69034484 41 AACAGAAATTCGGCCCCCATCTGGTGCCCATCCTGGTGGAG AACAGAAATTCGGCCCCCATCTGATGCCCATCCTGGTGGAG < 41bp 0.749744889601947 0.503069454292311 0.21953598 0.21097228 prediction 0.493350870619271 Functional Loss - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69034464 chr2:69034467 stopgain 0.971 4 24 hm5C_associated_SNPs_66434 0 0 0 0 2 ARHGAP25 chr2:69034408 3'AG 69034408 Downstream 60bp
chr11 60229958 60229958 1 + G C rs200805059 60229954 + 60229934 60229974 41 ACTCTTCAGGAGGATGTCTTCACTGGTGGGCCCCACGCAAA ACTCTTCAGGAGGATGTCTTCACTCGTGGGCCCCACGCAAA < 41bp 0.828186435702227 0.5815113542502 0.33113658 0.2163077 prediction 0.493350162904053 Functional Loss - MS4A1 ENSG00000156738 CDS Human protein_coding chr11:60229954 chr11:60229958 synonymous SNV . 0 25 hm5C_associated_SNPs_66436 0 0 0 0 2 MS4A1 chr11:60229958 5'GT 60229958 Upstream 1bp
chr11 60229958 60229958 1 + G C rs200805059 60229954 + 60229934 60229974 41 ACTCTTCAGGAGGATGTCTTCACTGGTGGGCCCCACGCAAA ACTCTTCAGGAGGATGTCTTCACTCGTGGGCCCCACGCAAA < 41bp 0.828186435702227 0.5815113542502 0.33113658 0.2163077 prediction 0.493350162904053 Functional Loss - MS4A1 ENSG00000156738 CDS Human protein_coding chr11:60229954 chr11:60229958 synonymous SNV . 0 25 hm5C_associated_SNPs_66436 0 0 0 0 2 MS4A1 chr11:60230006 5'GT 60230006 Upstream 49bp
chr11 47179444 47179444 1 + C T BLCA 47179442 + 47179422 47179462 41 TATGGATTCCTCATGGCTCTCTCAAAGCACCGTGGAATCAA TATGGATTCCTCATGGCTCTCTTAAAGCACCGTGGAATCAA < 41bp 0.746675021739114 0.451615204058543 0.22144449 0.045285642 prediction 0.493350043478229 Functional Loss - C11orf49 ENSG00000149179 CDS Human protein_coding chr11:47179442 chr11:47179444 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_66437 0 0 1 0 2 C11orf49 chr11:47179364 3'AG 47179364 Downstream 81bp
chr11 47179444 47179444 1 + C T BLCA 47179442 + 47179422 47179462 41 TATGGATTCCTCATGGCTCTCTCAAAGCACCGTGGAATCAA TATGGATTCCTCATGGCTCTCTTAAAGCACCGTGGAATCAA < 41bp 0.746675021739114 0.451615204058543 0.22144449 0.045285642 prediction 0.493350043478229 Functional Loss - C11orf49 ENSG00000149179 CDS Human protein_coding chr11:47179442 chr11:47179444 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_66437 0 0 1 0 2 C11orf49 chr11:47179473 5'GT 47179473 Upstream 30bp
chr11 47179443 47179443 1 + T C COAD 47179442 + 47179422 47179462 41 TATGGATTCCTCATGGCTCTCTCAAAGCACCGTGGAATCAA TATGGATTCCTCATGGCTCTCCCAAAGCACCGTGGAATCAA < 41bp 0.746675021739114 0.472115318221777 0.22144449 0.102639616 prediction 0.493350043478229 Functional Loss - C11orf49 ENSG00000149179 CDS Human protein_coding chr11:47179442 chr11:47179443 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_66438 0 0 1 0 2 C11orf49 chr11:47179364 3'AG 47179364 Downstream 80bp
chr11 47179443 47179443 1 + T C COAD 47179442 + 47179422 47179462 41 TATGGATTCCTCATGGCTCTCTCAAAGCACCGTGGAATCAA TATGGATTCCTCATGGCTCTCCCAAAGCACCGTGGAATCAA < 41bp 0.746675021739114 0.472115318221777 0.22144449 0.102639616 prediction 0.493350043478229 Functional Loss - C11orf49 ENSG00000149179 CDS Human protein_coding chr11:47179442 chr11:47179443 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_66438 0 0 1 0 2 C11orf49 chr11:47179473 5'GT 47179473 Upstream 31bp
chrX 155171642 155171642 1 + G C LUAD 155171638 + 155171618 155171658 41 AAGAAGAAGTTACCATTAACCAAGGATATGAGAGAACAAGG AAGAAGAAGTTACCATTAACCAAGCATATGAGAGAACAAGG < 41bp 0.822962011206052 0.576289801210035 0.73774624 0.39964926 prediction 0.493344419992034 Functional Loss - VAMP7 ENSG00000124333 CDS Human protein_coding chrX:155171638 chrX:155171642 nonsynonymous SNV 0.885 1 25 hm5C_associated_SNPs_66440 0 0 0 0 1 VAMP7 chrX:155171547 3'AG 155171547 Downstream 96bp
chrX 151815422 151815422 1 + C T UCEC 151815420 + 151815400 151815440 41 TCTTCCCAGGACTACACGATCACGATGTTTTTTCATCAGAC TCTTCCCAGGACTACACGATCATGATGTTTTTTCATCAGAC < 41bp 0.746671917859669 0.470112452765314 0.4125768 0.4533146 prediction 0.493343835719338 Functional Loss - GABRQ ENSG00000147402 CDS Human other chrX:151815420 chrX:151815422 nonsynonymous SNV 0.986 2 23 hm5C_associated_SNPs_66441 0 0 0 0 1 GABRQ chrX:151815409 3'AG 151815409 Downstream 14bp
chr3 44943340 44943340 1 + C T PRAD 44943338 + 44943318 44943358 41 TGACAGGCTTCGATTCAGCTCACGACACAGAAAGGAACCTC TGACAGGCTTCGATTCAGCTCATGACACAGAAAGGAACCTC < 41bp 0.802097024578098 0.555426244540075 0.029891968 0.089134574 prediction 0.493341560076046 Functional Loss - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44943338 chr3:44943340 synonymous SNV . 0 23 hm5C_associated_SNPs_66443 0 0 0 0 2 TGM4 chr3:44943285 3'AG 44943285 Downstream 56bp
chr3 44943340 44943340 1 + C T PRAD 44943338 + 44943318 44943358 41 TGACAGGCTTCGATTCAGCTCACGACACAGAAAGGAACCTC TGACAGGCTTCGATTCAGCTCATGACACAGAAAGGAACCTC < 41bp 0.802097024578098 0.555426244540075 0.029891968 0.089134574 prediction 0.493341560076046 Functional Loss - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44943338 chr3:44943340 synonymous SNV . 0 23 hm5C_associated_SNPs_66443 0 0 0 0 2 TGM4 chr3:44943423 5'GT 44943423 Upstream 84bp
chr1 205041208 205041208 1 + G C STAD 205041207 + 205041187 205041227 41 TGACCGTGAGGGCCTACAACCGGGCTGGCACTGGGCCTGCC TGACCGTGAGGGCCTACAACCCGGCTGGCACTGGGCCTGCC < 41bp 0.746660538199688 0.422322959406938 0.9322524 0.8861269 prediction 0.493321076399376 Functional Loss - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205041207 chr1:205041208 nonsynonymous SNV 0.972 2 22 hm5C_associated_SNPs_66446 0 0 0 0 1 CNTN2 chr1:205041261 5'GT 205041261 Upstream 54bp
chr5 155771507 155771507 1 + G T COAD 155771505 + 155771485 155771525 41 CTCGTTTATTTCAGATGCCTCAGGAGCAGTACACTCACCAC CTCGTTTATTTCAGATGCCTCATGAGCAGTACACTCACCAC < 41bp 0.746657827025757 0.473967628680631 0.8967426 0.19883421 prediction 0.493315654051514 Functional Loss - SGCD ENSG00000170624 CDS Human protein_coding chr5:155771505 chr5:155771507 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_66447 0 0 0 0 1 SGCD chr5:155771499 3'AG 155771499 Downstream 9bp
chr2 29226450 29226450 1 + G T STAD 29226447 + 29226427 29226467 41 ATCCCACCCATCCCAAAGGCCAGGACGGTTGCAGCGACCCC ATCCCACCCATCCCAAAGGCCAGTACGGTTGCAGCGACCCC < 41bp 0.746654337007223 0.343009200072699 0.19594732 0.10285297 prediction 0.493308674014446 Functional Loss - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29226447 chr2:29226450 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_66448 0 0 0 0 2 TOGARAM2 chr2:29226358 3'AG 29226358 Downstream 93bp
chr2 29226450 29226450 1 + G T STAD 29226447 + 29226427 29226467 41 ATCCCACCCATCCCAAAGGCCAGGACGGTTGCAGCGACCCC ATCCCACCCATCCCAAAGGCCAGTACGGTTGCAGCGACCCC < 41bp 0.746654337007223 0.343009200072699 0.19594732 0.10285297 prediction 0.493308674014446 Functional Loss - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29226447 chr2:29226450 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_66448 0 0 0 0 2 TOGARAM2 chr2:29226548 5'GT 29226548 Upstream 99bp
chr6 43099823 43099823 1 + C T rs200192410 43099821 + 43099801 43099841 41 TGCTGACCCAGGTCCGGCCACGCAATGCAGGGATCTACCGC TGCTGACCCAGGTCCGGCCACGTAATGCAGGGATCTACCGC < 41bp 0.805489777065295 0.558840691894691 0.4598569 0.7333462 prediction 0.493298170341209 Functional Loss - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43099821 chr6:43099823 synonymous SNV . 0 23 hm5C_associated_SNPs_66450 0 0 1 0 2 PTK7 chr6:43099754 3'AG 43099754 Downstream 70bp
chr6 43099823 43099823 1 + C T rs200192410 43099821 + 43099801 43099841 41 TGCTGACCCAGGTCCGGCCACGCAATGCAGGGATCTACCGC TGCTGACCCAGGTCCGGCCACGTAATGCAGGGATCTACCGC < 41bp 0.805489777065295 0.558840691894691 0.4598569 0.7333462 prediction 0.493298170341209 Functional Loss - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43099821 chr6:43099823 synonymous SNV . 0 23 hm5C_associated_SNPs_66450 0 0 1 0 2 PTK7 chr6:43099902 5'GT 43099902 Upstream 80bp
chr1 99771323 99771323 1 + T C STAD 99771322 + 99771302 99771342 41 CCCTCAGGTCTCTGACAGACCTCAATCAAGATCCCAACCGA CCCTCAGGTCTCTGACAGACCCCAATCAAGATCCCAACCGA < 41bp 0.746628189119478 0.492637115101484 0.07031423 0.007903755 prediction 0.493256378238957 Functional Loss - PLPPR4 ENSG00000117600 CDS Human protein_coding chr1:99771322 chr1:99771323 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_66456 0 0 0 0 1 PLPPR4 chr1:99771241 3'AG 99771241 Downstream 83bp
chr2 25354316 25354316 1 + C T UCEC 25354314 + 25354294 25354334 41 CGCAGCGCTGCGACGGTGCGCGCGGGCATCGTGGAAGTCTT CGCAGCGCTGCGACGGTGCGCGTGGGCATCGTGGAAGTCTT < 41bp 0.747200522183827 0.500575714796151 0.5708616 0.5541729 prediction 0.493249614775351 Functional Loss - EFR3B ENSG00000084710 CDS Human protein_coding chr2:25354314 chr2:25354316 nonsynonymous SNV 0.262 2 23 hm5C_associated_SNPs_66457 0 0 0 0 2 EFR3B chr2:25354237 3'AG 25354237 Downstream 80bp
chr2 25354316 25354316 1 + C T UCEC 25354314 + 25354294 25354334 41 CGCAGCGCTGCGACGGTGCGCGCGGGCATCGTGGAAGTCTT CGCAGCGCTGCGACGGTGCGCGTGGGCATCGTGGAAGTCTT < 41bp 0.747200522183827 0.500575714796151 0.5708616 0.5541729 prediction 0.493249614775351 Functional Loss - EFR3B ENSG00000084710 CDS Human protein_coding chr2:25354314 chr2:25354316 nonsynonymous SNV 0.262 2 23 hm5C_associated_SNPs_66457 0 0 0 0 2 EFR3B chr2:25354372 5'GT 25354372 Upstream 57bp
chr3 40275428 40275428 1 + G T PAAD 40275426 + 40275406 40275446 41 TGCCACAGAGGAGTTGATAGCAGGATCTACAGGGCCCTGGG TGCCACAGAGGAGTTGATAGCATGATCTACAGGGCCCTGGG < 41bp 0.869601084560064 0.622983142378726 0.9410367 0.35867113 prediction 0.493235884362677 Functional Loss - MYRIP ENSG00000170011 CDS Human protein_coding chr3:40275426 chr3:40275428 stopgain 0.988 1 23 hm5C_associated_SNPs_66458 0 0 0 0 2 MYRIP chr3:40275350 3'AG 40275350 Downstream 79bp
chr3 40275428 40275428 1 + G T PAAD 40275426 + 40275406 40275446 41 TGCCACAGAGGAGTTGATAGCAGGATCTACAGGGCCCTGGG TGCCACAGAGGAGTTGATAGCATGATCTACAGGGCCCTGGG < 41bp 0.869601084560064 0.622983142378726 0.9410367 0.35867113 prediction 0.493235884362677 Functional Loss - MYRIP ENSG00000170011 CDS Human protein_coding chr3:40275426 chr3:40275428 stopgain 0.988 1 23 hm5C_associated_SNPs_66458 0 0 0 0 2 MYRIP chr3:40275387 3'AG 40275387 Downstream 42bp
chr19 55179128 55179128 1 + A C rs2764337 55179127 + 55179107 55179147 41 CCCCAGGCAGTGACGTATGCCAAGGTGAAACACTCCAGACC CCCCAGGCAGTGACGTATGCCCAGGTGAAACACTCCAGACC < 41bp 0.749593503609445 0.502982168873064 0.57599735 0.860772 prediction 0.493222669472762 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55179127 chr19:55179128 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_66460 0 0 0 0 2 LILRB4 chr19:55179086 3'AG 55179086 Downstream 43bp
chr19 55179128 55179128 1 + A C rs2764337 55179127 + 55179107 55179147 41 CCCCAGGCAGTGACGTATGCCAAGGTGAAACACTCCAGACC CCCCAGGCAGTGACGTATGCCCAGGTGAAACACTCCAGACC < 41bp 0.749593503609445 0.502982168873064 0.57599735 0.860772 prediction 0.493222669472762 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55179127 chr19:55179128 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_66460 0 0 0 0 2 LILRB4 chr19:55179089 3'AG 55179089 Downstream 40bp
chr8 27509143 27509143 1 + G C LUSC 27509139 + 27509119 27509159 41 GGCCGTGGCTGTGTTGGCCTCTCTGGGTGAGTCCGGGGCTT GGCCGTGGCTGTGTTGGCCTCTCTCGGTGAGTCCGGGGCTT < 41bp 0.746611132580323 0.462401969300694 0.6457131 0.1896464 prediction 0.493222265160646 Functional Loss - SCARA3 ENSG00000168077 CDS Human protein_coding chr8:27509139 chr8:27509143 synonymous SNV . 0 25 hm5C_associated_SNPs_66461 0 0 0 0 1 SCARA3 chr8:27509144 5'GT 27509144 Upstream 2bp
chr1 156618410 156618410 1 + C T UCEC 156618408 + 156618388 156618428 41 GAAGCTGACATTGGAGGAAGCACGGGCGTACTGCCAGGAGC GAAGCTGACATTGGAGGAAGCATGGGCGTACTGCCAGGAGC < 41bp 0.776000866379754 0.529390890081552 0.9012347 0.8859155 prediction 0.493219952596403 Functional Loss - BCAN ENSG00000132692 CDS Human protein_coding chr1:156618408 chr1:156618410 nonsynonymous SNV 0.768 2 23 hm5C_associated_SNPs_66462 0 0 0 0 1 BCAN chr1:156618360 3'AG 156618360 Downstream 51bp
chr21 41142941 41142941 1 + G T BRCA 41142938 + 41142918 41142958 41 CCTCACACTGGACCCGGCTCCCGGATATTTCCTGGGAGCTC CCTCACACTGGACCCGGCTCCCGTATATTTCCTGGGAGCTC < 41bp 0.7466082960609 0.347405583532146 0.90429753 0.73802257 prediction 0.4932165921218 Functional Loss - IGSF5 ENSG00000183067 CDS Human protein_coding chr21:41142938 chr21:41142941 nonsynonymous SNV 0.006 2 24 hm5C_associated_SNPs_66464 0 0 0 0 1 IGSF5 chr21:41142843 3'AG 41142843 Downstream 99bp
chr2 163204218 163204218 1 + C T SKCM 163204216 + 163204196 163204236 41 ACTTATTCCTCAGCTGGTGACTCCGTGTATACTTACTTCAG ACTTATTCCTCAGCTGGTGACTTCGTGTATACTTACTTCAG < 41bp 0.746604998010011 0.46464531155859 0.082327545 0.043343455 prediction 0.493209996020022 Functional Loss - GCA ENSG00000115271 CDS Human protein_coding chr2:163204216 chr2:163204218 nonsynonymous SNV 0.077 0 23 hm5C_associated_SNPs_66465 0 0 1 0 1 GCA chr2:163204252 5'GT 163204252 Upstream 35bp
chr19 51647721 51647721 1 + G T UCEC 51647718 + 51647698 51647738 41 ACCCTGGAGTCTGGCTGCTTCCAGAATCTGACCTGCTCTGT ACCCTGGAGTCTGGCTGCTTCCATAATCTGACCTGCTCTGT < 41bp 0.74660256089911 0.349591342150596 0.9140154 0.7658477 prediction 0.493205121798221 Functional Loss - SIGLEC7 ENSG00000168995 CDS Human protein_coding chr19:51647718 chr19:51647721 nonsynonymous SNV 0.037 0 24 hm5C_associated_SNPs_66467 0 0 0 0 1 SIGLEC7 chr19:51647663 3'AG 51647663 Downstream 59bp
chr1 226027600 226027600 1 + G A GBM 226027597 + 226027577 226027617 41 TCTCTACCCTGACCCTCCTCCTGGGACAGCGTTTCGGGAGG TCTCTACCCTGACCCTCCTCCTGAGACAGCGTTTCGGGAGG < 41bp 0.759421688093247 0.512830793097055 0.8810022 0.5896236 prediction 0.493181789992383 Functional Loss - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226027597 chr1:226027600 nonsynonymous SNV 0.128 4 24 hm5C_associated_SNPs_66473 0 0 1 0 1 EPHX1 chr1:226027530 3'AG 226027530 Downstream 71bp
chr3 101573503 101573503 1 + G T LUAD 101573501 + 101573481 101573521 41 AGATGAATGCACTTCACATGCTGGATATTAAAGAGCACAAT AGATGAATGCACTTCACATGCTTGATATTAAAGAGCACAAT < 41bp 0.87375844175744 0.627167845099278 0.25051373 0.1020709 prediction 0.493181193316323 Functional Loss - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101573501 chr3:101573503 synonymous SNV . 0 23 hm5C_associated_SNPs_66474 0 0 1 0 2 NFKBIZ chr3:101573422 3'AG 101573422 Downstream 82bp
chr3 101573503 101573503 1 + G T LUAD 101573501 + 101573481 101573521 41 AGATGAATGCACTTCACATGCTGGATATTAAAGAGCACAAT AGATGAATGCACTTCACATGCTTGATATTAAAGAGCACAAT < 41bp 0.87375844175744 0.627167845099278 0.25051373 0.1020709 prediction 0.493181193316323 Functional Loss - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101573501 chr3:101573503 synonymous SNV . 0 23 hm5C_associated_SNPs_66474 0 0 1 0 2 NFKBIZ chr3:101573527 5'GT 101573527 Upstream 25bp
chr16 3085428 3085428 1 + C T BLCA 3085426 + 3085406 3085446 41 AGCACAAAGGGGAAGAAGCCCTCGTCGCCGCTGGGAGAGGC AGCACAAAGGGGAAGAAGCCCTTGTCGCCGCTGGGAGAGGC < 41bp 0.75561959491051 0.50902998120971 0.09729838 0.081205815 prediction 0.493179227401599 Functional Loss - BICDL2 ENSG00000162069 CDS Human protein_coding chr16:3085426 chr16:3085428 nonsynonymous SNV 0.199 1 23 hm5C_associated_SNPs_66475 0 0 0 0 1 BICDL2 chr16:3085339 3'AG 3085339 Downstream 90bp
chr9 95841884 95841884 1 + C T UCEC 95841882 + 95841862 95841902 41 CACGACAACCACAGCTTCACCACGTGAGCCCGGGTCTGGGT CACGACAACCACAGCTTCACCATGTGAGCCCGGGTCTGGGT < 41bp 0.775259261166562 0.52867364839449 0.49739897 0.36307108 prediction 0.493171225544144 Functional Loss - SUSD3 ENSG00000157303 CDS Human protein_coding chr9:95841882 chr9:95841884 nonsynonymous SNV 0.061 0 23 hm5C_associated_SNPs_66477 0 0 0 0 1 SUSD3 chr9:95841884 5'GT 95841884 Upstream 1bp
chr18 60036673 60036673 1 + G T COAD 60036670 + 60036650 60036690 41 GCTCCCAAGCTCAGCGAGGGCAGGTGCCGGGTCTGGAAGCT GCTCCCAAGCTCAGCGAGGGCAGTTGCCGGGTCTGGAAGCT < 41bp 0.746581636393283 0.351317010446164 0.86494267 0.83074856 prediction 0.493163272786565 Functional Loss - TNFRSF11A ENSG00000141655 CDS Human protein_coding chr18:60036670 chr18:60036673 nonsynonymous SNV 0.015 0 24 hm5C_associated_SNPs_66480 0 0 0 0 1 TNFRSF11A chr18:60036717 5'GT 60036717 Upstream 45bp
chr15 51974034 51974034 1 + G T STAD 51974031 + 51974011 51974051 41 TCCCCAAACCTGGAGGAAGCCAAGGTATGTGAACACTTTTC TCCCCAAACCTGGAGGAAGCCAATGTATGTGAACACTTTTC < 41bp 0.746579569586841 0.367405227588291 0.24263915 0.12109542 prediction 0.493159139173681 Functional Loss - SCG3 ENSG00000104112 CDS Human protein_coding chr15:51974031 chr15:51974034 nonsynonymous SNV 0.825 4 24 hm5C_associated_SNPs_66481 0 0 1 0 1 SCG3 chr15:51974034 5'GT 51974034 Upstream 1bp
chr19 3530836 3530836 1 + C T SKCM 3530834 + 3530814 3530854 41 GTGGAAGGGGACTCAGTGACCTCCGTGGGCTGGTCTGAGCG GTGGAAGGGGACTCAGTGACCTTCGTGGGCTGGTCTGAGCG < 41bp 0.802403852633659 0.555829853792877 0.86989033 0.41893625 prediction 0.493147997681563 Functional Loss - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3530834 chr19:3530836 nonsynonymous SNV 0.981 4 23 hm5C_associated_SNPs_66483 0 0 1 0 2 FZR1 chr19:3530790 3'AG 3530790 Downstream 47bp
chr19 3530836 3530836 1 + C T SKCM 3530834 + 3530814 3530854 41 GTGGAAGGGGACTCAGTGACCTCCGTGGGCTGGTCTGAGCG GTGGAAGGGGACTCAGTGACCTTCGTGGGCTGGTCTGAGCG < 41bp 0.802403852633659 0.555829853792877 0.86989033 0.41893625 prediction 0.493147997681563 Functional Loss - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3530834 chr19:3530836 nonsynonymous SNV 0.981 4 23 hm5C_associated_SNPs_66483 0 0 1 0 2 FZR1 chr19:3530855 5'GT 3530855 Upstream 20bp
chrX 69670040 69670040 1 + G A SKCM 69670037 + 69670017 69670057 41 AGGCCTGGGTTTCAGCATTGCTGGGGGTATTGGCAACCAGC AGGCCTGGGTTTCAGCATTGCTGAGGGTATTGGCAACCAGC < 41bp 0.750486578657817 0.503920407850488 0.8937969 0.25026459 prediction 0.493132341614658 Functional Loss - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69670037 chrX:69670040 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_66486 0 0 0 0 1 DLG3 chrX:69670019 3'AG 69670019 Downstream 22bp
chr1 156851306 156851306 1 + G T COAD 156851304 + 156851284 156851324 41 GCGGCCACGTGCCTGCCCACCAGAGGTCTACGCCATCATGC GCGGCCACGTGCCTGCCCACCATAGGTCTACGCCATCATGC < 41bp 0.89106950605221 0.644518908187173 0.8657002 0.09439966 prediction 0.493101195730075 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156851304 chr1:156851306 stopgain 0.996 1 23 hm5C_associated_SNPs_66490 0 0 0 0 1 NTRK1 chr1:156851249 3'AG 156851249 Downstream 58bp
chr10 99343372 99343372 1 + G A SKCM 99343369 + 99343349 99343389 41 CGGACCTGGTGCAGCTCTGGCAGGCTGATACCCGGCACGCC CGGACCTGGTGCAGCTCTGGCAGACTGATACCCGGCACGCC < 41bp 0.749780812980318 0.5032332122152 0.9243218 0.82715833 prediction 0.493095201530237 Functional Loss - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99343369 chr10:99343372 nonsynonymous SNV 0.923 0 24 hm5C_associated_SNPs_66492 0 0 0 0 1 ANKRD2 chr10:99343333 3'AG 99343333 Downstream 40bp
chr6 160237602 160237602 1 + C T LGG 160237600 + 160237580 160237620 41 ACAAAGTGCCCCCACGAAGCCGCGTATGATGCCTTCCTCTG ACAAAGTGCCCCCACGAAGCCGTGTATGATGCCTTCCTCTG < 41bp 0.791318737951396 0.544773477041296 0.33689427 0.29193056 prediction 0.4930905218202 Functional Loss - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160237600 chr6:160237602 nonsynonymous SNV 0.063 3 23 hm5C_associated_SNPs_66493 0 0 0 0 2 PNLDC1 chr6:160237575 3'AG 160237575 Downstream 28bp
chr6 160237602 160237602 1 + C T LGG 160237600 + 160237580 160237620 41 ACAAAGTGCCCCCACGAAGCCGCGTATGATGCCTTCCTCTG ACAAAGTGCCCCCACGAAGCCGTGTATGATGCCTTCCTCTG < 41bp 0.791318737951396 0.544773477041296 0.33689427 0.29193056 prediction 0.4930905218202 Functional Loss - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160237600 chr6:160237602 nonsynonymous SNV 0.063 3 23 hm5C_associated_SNPs_66493 0 0 0 0 2 PNLDC1 chr6:160237628 5'GT 160237628 Upstream 27bp
chr8 133829707 133829707 1 + G T LUAD 133829705 + 133829685 133829725 41 TCTTACCGTAATGAATGTCCCAGGGCAGAAAAAGAGGATAC TCTTACCGTAATGAATGTCCCATGGCAGAAAAAGAGGATAC < 41bp 0.746530104791027 0.405761404257994 0.7664008 0.16842622 prediction 0.493060209582054 Functional Loss - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133829705 chr8:133829707 nonsynonymous SNV 0.983 1 23 hm5C_associated_SNPs_66498 0 0 1 2 1 PHF20L1 chr8:133829790 5'GT 133829790 Upstream 84bp
chr21 37711184 37711184 1 + G T COAD 37711181 + 37711161 37711201 41 GAACTTGATGCTATTATAGGCAAGAAGGGGACGAGGATCAT GAACTTGATGCTATTATAGGCAATAAGGGGACGAGGATCAT < 41bp 0.746522377085083 0.368029238715747 0.2707982 0.14250651 prediction 0.493044754170167 Functional Loss - MORC3 ENSG00000159256 CDS Human protein_coding chr21:37711181 chr21:37711184 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_66500 0 0 1 0 1 MORC3 chr21:37711219 5'GT 37711219 Upstream 36bp
chr17 38420817 38420817 1 + C T LAML 38420815 + 38420795 38420835 41 CCAAGGCCTCCAGTATCTGCCGCCAGCGGGCGTCCTCAGGA CCAAGGCCTCCAGTATCTGCCGTCAGCGGGCGTCCTCAGGA < 41bp 0.819763323307046 0.573241582217706 0.3967913 0.055219203 prediction 0.49304348217868 Functional Loss - WIPF2 ENSG00000171475 CDS Human protein_coding chr17:38420815 chr17:38420817 nonsynonymous SNV 0.914 1 23 hm5C_associated_SNPs_66501 0 0 0 0 1 WIPF2 chr17:38420742 3'AG 38420742 Downstream 76bp
chr19 3748006 3748006 1 + C T BLCA 3748004 + 3747984 3748024 41 GCTCCAGCCCTGGCCCGGTCCTCGGAGCCCGTGCAGGCAGA GCTCCAGCCCTGGCCCGGTCCTTGGAGCCCGTGCAGGCAGA < 41bp 0.791821231604149 0.545306941391326 0.26748377 0.040370226 prediction 0.493028580425645 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3748004 chr19:3748006 nonsynonymous SNV 0.564 4 23 hm5C_associated_SNPs_66502 0 0 0 0 1 TJP3 chr19:3748079 5'GT 3748079 Upstream 74bp
chr18 8609900 8609900 1 + A T TGCT 8609896 + 8609876 8609916 41 CGCGGCGTGGGCAAGACCAGCCTGATGGAGCGCTTCACCGA CGCGGCGTGGGCAAGACCAGCCTGTTGGAGCGCTTCACCGA < 41bp 0.746505016527626 0.427498526056857 0.3390866 0.29508263 prediction 0.493010033055253 Functional Loss - RAB12 ENSG00000206418 CDS Human protein_coding chr18:8609896 chr18:8609900 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_66504 0 0 1 0 1 RAB12 chr18:8609951 5'GT 8609951 Upstream 52bp
chr9 95381833 95381833 1 - G A rs150074671 95381835 - 95381815 95381855 41 CCCTGCAGGTGCAGCAGTACCGCGTCGCCATGACTGCCAAG CCCTGCAGGTGCAGCAGTACCGTGTCGCCATGACTGCCAAG < 41bp 0.803886849466169 0.557388723212315 0.22620508 0.15287578 prediction 0.492996252507707 Functional Loss - IPPK ENSG00000127080 CDS Human protein_coding chr9:95381835 chr9:95381833 synonymous SNV . 0 23 hm5C_associated_SNPs_66506 0 0 1 0 2 IPPK chr9:95381768 5'GT 95381768 Upstream 66bp
chr9 95381833 95381833 1 - G A rs150074671 95381835 - 95381815 95381855 41 CCCTGCAGGTGCAGCAGTACCGCGTCGCCATGACTGCCAAG CCCTGCAGGTGCAGCAGTACCGTGTCGCCATGACTGCCAAG < 41bp 0.803886849466169 0.557388723212315 0.22620508 0.15287578 prediction 0.492996252507707 Functional Loss - IPPK ENSG00000127080 CDS Human protein_coding chr9:95381835 chr9:95381833 synonymous SNV . 0 23 hm5C_associated_SNPs_66506 0 0 1 0 2 IPPK chr9:95381847 3'AG 95381847 Downstream 15bp
chr6 28094593 28094593 1 + C T LIHC 28094591 + 28094571 28094611 41 ATTCAGAAAGACGGGACATACTCATGGACAAGTTGGCCCCC ATTCAGAAAGACGGGACATACTTATGGACAAGTTGGCCCCC < 41bp 0.808403849843097 0.561911370944769 0.03042838 0.01552394 prediction 0.492984957796657 Functional Loss - ZSCAN16 ENSG00000196812 CDS Human protein_coding chr6:28094591 chr6:28094593 synonymous SNV . 0 23 hm5C_associated_SNPs_66508 0 0 1 0 1 ZSCAN16 chr6:28094561 3'AG 28094561 Downstream 33bp
chr17 4619814 4619814 1 + C T BLCA 4619812 + 4619792 4619832 41 CGCCACCTACCAGGCCTTCCCCCCGGTGCCCAACCCACCCC CGCCACCTACCAGGCCTTCCCCTCGGTGCCCAACCCACCCC < 41bp 0.792741248841645 0.546262386450242 0.54016936 0.16366994 prediction 0.492957724782806 Functional Loss - ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4619812 chr17:4619814 nonsynonymous SNV 0.907 3 23 hm5C_associated_SNPs_66511 0 0 1 0 1 ARRB2 chr17:4619903 5'GT 4619903 Upstream 90bp
chrX 103041613 103041613 1 + G T OV 103041611 + 103041591 103041631 41 ATCAAGCTCATTCTTTGGAGCGGGTGTGTCATTGTTTGGGA ATCAAGCTCATTCTTTGGAGCGTGTGTGTCATTGTTTGGGA < 41bp 0.746474073510354 0.397824122089355 0.20723212 0.011224151 prediction 0.492948147020708 Functional Loss - PLP1 ENSG00000123560 CDS Human protein_coding chrX:103041611 chrX:103041613 synonymous SNV . 0 23 hm5C_associated_SNPs_66513 0 0 1 0 1 PLP1 chrX:103041655 5'GT 103041655 Upstream 43bp
chr4 2695385 2695385 1 + C T rs200076543 2695383 + 2695363 2695403 41 GCCGCCCCGAGGAATAGCCCCACGGGCTTGGCCCCCCTCCC GCCGCCCCGAGGAATAGCCCCATGGGCTTGGCCCCCCTCCC < 41bp 0.778136084031941 0.531663787635453 0.84655136 0.87410206 prediction 0.492944592792977 Functional Loss - FAM193A ENSG00000125386 CDS Human protein_coding chr4:2695383 chr4:2695385 nonsynonymous SNV 0.684 4 23 hm5C_associated_SNPs_66515 0 0 1 0 1 FAM193A chr4:2695313 3'AG 2695313 Downstream 73bp
chr19 11097617 11097617 1 + C T LUAD 11097615 + 11097595 11097635 41 AACATGCCTCCCCCAGGACCCTCGGGCGTGCCCCCCGGGAT AACATGCCTCCCCCAGGACCCTTGGGCGTGCCCCCCGGGAT < 41bp 0.750606941818104 0.504143259814605 0.34351975 0.3258952 prediction 0.492927364006996 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11097615 chr19:11097617 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_66519 1 0 1 0 2 SMARCA4 chr19:11097581 3'AG 11097581 Downstream 37bp
chr19 11097617 11097617 1 + C T LUAD 11097615 + 11097595 11097635 41 AACATGCCTCCCCCAGGACCCTCGGGCGTGCCCCCCGGGAT AACATGCCTCCCCCAGGACCCTTGGGCGTGCCCCCCGGGAT < 41bp 0.750606941818104 0.504143259814605 0.34351975 0.3258952 prediction 0.492927364006996 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11097615 chr19:11097617 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_66519 1 0 1 0 2 SMARCA4 chr19:11097679 5'GT 11097679 Upstream 63bp
chr9 131256879 131256879 1 + G T PAAD 131256876 + 131256856 131256896 41 AGGCGAAGCTGGCTGAGTGCCAAGACCAACTGCAGGGCTAT AGGCGAAGCTGGCTGAGTGCCAATACCAACTGCAGGGCTAT < 41bp 0.746461711835712 0.389145136759295 0.3622613 0.16401774 prediction 0.492923423671424 Functional Loss - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131256876 chr9:131256879 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_66521 0 0 1 0 2 ODF2 chr9:131256789 3'AG 131256789 Downstream 91bp
chr9 131256879 131256879 1 + G T PAAD 131256876 + 131256856 131256896 41 AGGCGAAGCTGGCTGAGTGCCAAGACCAACTGCAGGGCTAT AGGCGAAGCTGGCTGAGTGCCAATACCAACTGCAGGGCTAT < 41bp 0.746461711835712 0.389145136759295 0.3622613 0.16401774 prediction 0.492923423671424 Functional Loss - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131256876 chr9:131256879 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_66521 0 0 1 0 2 ODF2 chr9:131256947 5'GT 131256947 Upstream 69bp
chr16 5037580 5037580 1 + C T COAD 5037578 + 5037558 5037598 41 GCCTACGAGAAGCGTTTCCCCACGTGCCCACAGATCCCAGT GCCTACGAGAAGCGTTTCCCCATGTGCCCACAGATCCCAGT < 41bp 0.746456471067765 0.498286069934372 0.9122666 0.91056883 prediction 0.49291294213553 Functional Loss - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5037578 chr16:5037580 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_66525 0 0 0 0 1 SEC14L5 chr16:5037558 3'AG 5037558 Downstream 23bp
chr11 60780933 60780933 1 + C T COAD 60780931 + 60780911 60780951 41 GAAAATAGAGAACAAGGAATCTCGGGAGCTAATGCTCCTCA GAAAATAGAGAACAAGGAATCTTGGGAGCTAATGCTCCTCA < 41bp 0.746443871526711 0.483520248478652 0.16344392 0.3336386 prediction 0.492887743053422 Functional Loss - CD6 ENSG00000013725 CDS Human protein_coding chr11:60780931 chr11:60780933 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_66527 0 0 0 0 1 CD6 chr11:60780895 3'AG 60780895 Downstream 39bp
chr22 20861926 20861926 1 + G C rs572832970 20861925 + 20861905 20861945 41 GACTGAGGCGGCGGCGGTGGCGGCCAAGCGGGATACGGGCG GACTGAGGCGGCGGCGGTGGCCGCCAAGCGGGATACGGGCG < 41bp 0.746442285920904 0.457296669008194 0.9073422 0.79538983 prediction 0.492884571841807 Functional Loss - MED15 ENSG00000099917 UTR5 Human protein_coding chr22:20861925 chr22:20861926 . . 0 22 hm5C_associated_SNPs_66528 0 0 1 0 1 MED15 chr22:20862022 5'GT 20862022 Upstream 97bp
chr12 125609569 125609569 1 + A C rs186498083 125609568 + 125609548 125609588 41 CATCCTCCTGGGCTCCATCTCAGGTATGGCCCCGGTGGGGA CATCCTCCTGGGCTCCATCTCCGGTATGGCCCCGGTGGGGA < 41bp 0.794593166172831 0.548154095375207 0.8764237 0.3001542 prediction 0.492878141595249 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125609568 chr12:125609569 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_66531 0 0 0 0 1 AACS chr12:125609570 5'GT 125609570 Upstream 2bp
chr12 98987826 98987826 1 + G C HNSC 98987825 + 98987805 98987845 41 CCACATCTGCAGCTGGTGCACGATGGTCTCGGGGACCTCCG CCACATCTGCAGCTGGTGCACCATGGTCTCGGGGACCTCCG < 41bp 0.857022501842577 0.610588069212528 0.34091616 0.07769364 prediction 0.492868865260097 Functional Loss - SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98987825 chr12:98987826 nonsynonymous SNV 0.809 2 22 hm5C_associated_SNPs_66532 0 0 1 0 3 SLC25A3 chr12:98987753 3'AG 98987753 Downstream 74bp
chr12 98987826 98987826 1 + G C HNSC 98987825 + 98987805 98987845 41 CCACATCTGCAGCTGGTGCACGATGGTCTCGGGGACCTCCG CCACATCTGCAGCTGGTGCACCATGGTCTCGGGGACCTCCG < 41bp 0.857022501842577 0.610588069212528 0.34091616 0.07769364 prediction 0.492868865260097 Functional Loss - SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98987825 chr12:98987826 nonsynonymous SNV 0.809 2 22 hm5C_associated_SNPs_66532 0 0 1 0 3 SLC25A3 chr12:98987757 3'AG 98987757 Downstream 70bp
chr12 98987826 98987826 1 + G C HNSC 98987825 + 98987805 98987845 41 CCACATCTGCAGCTGGTGCACGATGGTCTCGGGGACCTCCG CCACATCTGCAGCTGGTGCACCATGGTCTCGGGGACCTCCG < 41bp 0.857022501842577 0.610588069212528 0.34091616 0.07769364 prediction 0.492868865260097 Functional Loss - SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98987825 chr12:98987826 nonsynonymous SNV 0.809 2 22 hm5C_associated_SNPs_66532 0 0 1 0 3 SLC25A3 chr12:98987913 5'GT 98987913 Upstream 88bp
chr11 60698110 60698110 1 + G T LUAD 60698107 + 60698087 60698127 41 CCTCATCACCTGCCACCGTGCTGGGCTCACAGAGCCAGATT CCTCATCACCTGCCACCGTGCTGTGCTCACAGAGCCAGATT < 41bp 0.74642305518723 0.345353813143234 0.37555057 0.14390421 prediction 0.492846110374459 Functional Loss - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60698107 chr11:60698110 nonsynonymous SNV 0.323 0 24 hm5C_associated_SNPs_66537 0 0 1 0 1 TMEM132A chr11:60698131 5'GT 60698131 Upstream 22bp
chr7 100385679 100385679 1 + G T UCEC 100385677 + 100385657 100385697 41 CGCAACAAGATGGATCCGCCCAGGAGCTCCATCTTCTTGCA CGCAACAAGATGGATCCGCCCATGAGCTCCATCTTCTTGCA < 41bp 0.74641928397262 0.411083186146713 0.90587586 0.16593105 prediction 0.492838567945239 Functional Loss - ZAN ENSG00000146839 CDS Human protein_coding chr7:100385677 chr7:100385679 nonsynonymous SNV 0.013 0 23 hm5C_associated_SNPs_66539 0 0 0 0 1 ZAN chr7:100385758 5'GT 100385758 Upstream 80bp
chr17 76167657 76167657 1 + C T UCEC 76167655 + 76167635 76167675 41 AACCAGTGGGCAGTCACCAACCCGAAGGACGTGCTGGTGGG AACCAGTGGGCAGTCACCAACCTGAAGGACGTGCTGGTGGG < 41bp 0.805697473091249 0.559282768891346 0.30566496 0.2009776 prediction 0.492829408399807 Functional Loss - SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167655 chr17:76167657 stopgain 0.000 1 23 hm5C_associated_SNPs_66541 0 0 1 0 2 SYNGR2 chr17:76167591 3'AG 76167591 Downstream 67bp
chr17 76167657 76167657 1 + C T UCEC 76167655 + 76167635 76167675 41 AACCAGTGGGCAGTCACCAACCCGAAGGACGTGCTGGTGGG AACCAGTGGGCAGTCACCAACCTGAAGGACGTGCTGGTGGG < 41bp 0.805697473091249 0.559282768891346 0.30566496 0.2009776 prediction 0.492829408399807 Functional Loss - SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167655 chr17:76167657 stopgain 0.000 1 23 hm5C_associated_SNPs_66541 0 0 1 0 2 SYNGR2 chr17:76167730 5'GT 76167730 Upstream 74bp
chr6 26446185 26446185 1 + G T LUSC 26446183 + 26446163 26446203 41 TCAGAAATTCCCTCCTCGGCCTGGAAAAGACAGCCAGCATA TCAGAAATTCCCTCCTCGGCCTTGAAAAGACAGCCAGCATA < 41bp 0.884171158669251 0.637756776565929 0.02745393 0.010319203 prediction 0.492828764206644 Functional Loss - BTN3A3 ENSG00000111801 CDS Human protein_coding chr6:26446183 chr6:26446185 synonymous SNV . 0 23 hm5C_associated_SNPs_66542 0 0 0 0 1 BTN3A3 chr6:26446213 5'GT 26446213 Upstream 29bp
chr22 24836570 24836570 1 + G C SARC 24836569 + 24836549 24836589 41 AGGTACAATGGCTTGGTGACCGGCACGAGGGCTAAGGGCAT AGGTACAATGGCTTGGTGACCCGCACGAGGGCTAAGGGCAT < 41bp 0.854031818748784 0.607620442789495 0.3569754 0.0712966 prediction 0.492822751918579 Functional Loss - ADORA2A ENSG00000128271 CDS Human protein_coding chr22:24836569 chr22:24836570 nonsynonymous SNV 0.966 3 22 hm5C_associated_SNPs_66543 0 0 1 0 1 ADORA2A chr22:24836551 3'AG 24836551 Downstream 20bp
chr16 57608917 57608917 1 + G A SKCM 57608914 + 57608894 57608934 41 TGCTGGGCCTCACCGTGCTGCTGGGAACCACCTGGGCCTTG TGCTGGGCCTCACCGTGCTGCTGAGAACCACCTGGGCCTTG < 41bp 0.75474385446758 0.508335696708913 0.3519497 0.21033013 prediction 0.492816315517334 Functional Loss - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57608914 chr16:57608917 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_66544 0 0 0 0 1 ADGRG5 chr16:57609004 5'GT 57609004 Upstream 88bp
chr3 127390319 127390319 1 + C T STAD 127390317 + 127390297 127390337 41 CACAACCAGCAGCTGCCAGGCGCGGGCCAGCCAGGTGCGCA CACAACCAGCAGCTGCCAGGCGTGGGCCAGCCAGGTGCGCA < 41bp 0.774115720697757 0.527709028379806 0.14062762 0.17315215 prediction 0.492813384635902 Functional Loss - PODXL2 ENSG00000114631 CDS Human protein_coding chr3:127390317 chr3:127390319 nonsynonymous SNV 0.980 3 23 hm5C_associated_SNPs_66546 0 0 1 0 1 PODXL2 chr3:127390277 3'AG 127390277 Downstream 43bp
chr3 149205458 149205458 1 + C T SKCM 149205456 + 149205436 149205476 41 GGATTCTTGGGAGCTGGATACTCGTTTATCATCTCAGCCAT GGATTCTTGGGAGCTGGATACTTGTTTATCATCTCAGCCAT < 41bp 0.822731276717537 0.57632685929073 0.02575922 0.03140226 prediction 0.492808834853615 Functional Loss - TM4SF4 ENSG00000169903 CDS Human protein_coding chr3:149205456 chr3:149205458 nonsynonymous SNV 0.854 2 23 hm5C_associated_SNPs_66549 0 0 0 0 2 TM4SF4 chr3:149205406 3'AG 149205406 Downstream 53bp
chr3 149205458 149205458 1 + C T SKCM 149205456 + 149205436 149205476 41 GGATTCTTGGGAGCTGGATACTCGTTTATCATCTCAGCCAT GGATTCTTGGGAGCTGGATACTTGTTTATCATCTCAGCCAT < 41bp 0.822731276717537 0.57632685929073 0.02575922 0.03140226 prediction 0.492808834853615 Functional Loss - TM4SF4 ENSG00000169903 CDS Human protein_coding chr3:149205456 chr3:149205458 nonsynonymous SNV 0.854 2 23 hm5C_associated_SNPs_66549 0 0 0 0 2 TM4SF4 chr3:149205542 5'GT 149205542 Upstream 85bp
chr16 1838189 1838189 1 + C T rs148673802 1838187 + 1838167 1838207 41 GCGGAGAGGAGCTGGCCCAGCTCGCCGGGGTGCCCTTCTTA GCGGAGAGGAGCTGGCCCAGCTTGCCGGGGTGCCCTTCTTA < 41bp 0.747280202487216 0.500879920731241 0.24166608 0.15961412 prediction 0.49280056351195 Functional Loss - NUBP2 ENSG00000095906 CDS Human protein_coding chr16:1838187 chr16:1838189 nonsynonymous SNV 0.005 1 23 hm5C_associated_SNPs_66552 0 0 1 0 2 NUBP2 chr16:1838139 3'AG 1838139 Downstream 51bp
chr16 1838189 1838189 1 + C T rs148673802 1838187 + 1838167 1838207 41 GCGGAGAGGAGCTGGCCCAGCTCGCCGGGGTGCCCTTCTTA GCGGAGAGGAGCTGGCCCAGCTTGCCGGGGTGCCCTTCTTA < 41bp 0.747280202487216 0.500879920731241 0.24166608 0.15961412 prediction 0.49280056351195 Functional Loss - NUBP2 ENSG00000095906 CDS Human protein_coding chr16:1838187 chr16:1838189 nonsynonymous SNV 0.005 1 23 hm5C_associated_SNPs_66552 0 0 1 0 2 NUBP2 chr16:1838208 5'GT 1838208 Upstream 20bp
chr3 38414227 38414227 1 + G T UCEC 38414225 + 38414205 38414245 41 GGCCTTCACTGGGGACAACCCAGGTGAGTATCTCGGGGAGT GGCCTTCACTGGGGACAACCCATGTGAGTATCTCGGGGAGT < 41bp 0.746398602433289 0.393888057740065 0.9253217 0.32815465 prediction 0.492797204866578 Functional Loss - XYLB ENSG00000093217 CDS Human protein_coding chr3:38414225 chr3:38414227 nonsynonymous SNV 0.985 1 23 hm5C_associated_SNPs_66554 0 0 1 0 2 XYLB chr3:38414146 3'AG 38414146 Downstream 82bp
chr3 38414227 38414227 1 + G T UCEC 38414225 + 38414205 38414245 41 GGCCTTCACTGGGGACAACCCAGGTGAGTATCTCGGGGAGT GGCCTTCACTGGGGACAACCCATGTGAGTATCTCGGGGAGT < 41bp 0.746398602433289 0.393888057740065 0.9253217 0.32815465 prediction 0.492797204866578 Functional Loss - XYLB ENSG00000093217 CDS Human protein_coding chr3:38414225 chr3:38414227 nonsynonymous SNV 0.985 1 23 hm5C_associated_SNPs_66554 0 0 1 0 2 XYLB chr3:38414227 5'GT 38414227 Upstream 1bp
chr3 40085724 40085724 1 + C T LIHC 40085722 + 40085702 40085742 41 GCTGCTGCTCCTACCAGAAGCACGAAAAGGCCTGGGTCTGC GCTGCTGCTCCTACCAGAAGCATGAAAAGGCCTGGGTCTGC < 41bp 0.772233734930392 0.525835633000275 0.19410804 0.13886592 prediction 0.492796203860235 Functional Loss - MYRIP ENSG00000170011 CDS Human protein_coding chr3:40085722 chr3:40085724 nonsynonymous SNV 0.856 1 23 hm5C_associated_SNPs_66555 0 0 0 0 1 MYRIP chr3:40085762 5'GT 40085762 Upstream 39bp
chr16 46724994 46724994 1 + G T SARC 46724991 + 46724971 46725011 41 CCAGCAGTGCAGTCATGTGCCTGGACCTTGCAGCTTCCTGG CCAGCAGTGCAGTCATGTGCCTGTACCTTGCAGCTTCCTGG < 41bp 0.918423652393943 0.672026780322257 0.25711378 0.26307085 prediction 0.492793744143371 Functional Loss - ORC6 ENSG00000091651 CDS Human protein_coding chr16:46724991 chr16:46724994 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_66557 0 0 1 0 1 ORC6 chr16:46724903 3'AG 46724903 Downstream 92bp
chr12 69995115 69995115 1 + C T STAD 69995113 + 69995093 69995133 41 CCACCCCTGTTAAGCATTCCCACGTGCTGTCGATCTTTGGA CCACCCCTGTTAAGCATTCCCATGTGCTGTCGATCTTTGGA < 41bp 0.746394372535853 0.49040829957239 0.12231392 0.15624022 prediction 0.492788745071706 Functional Loss - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69995113 chr12:69995115 synonymous SNV . 0 23 hm5C_associated_SNPs_66558 0 0 1 0 1 CCT2 chr12:69995075 3'AG 69995075 Downstream 41bp
chrX 86919816 86919816 1 + C T CESC 86919814 + 86919794 86919834 41 TGTGGCACCTCTGAGTGTTCCTCGAGATGCTGTTGCTGTGT TGTGGCACCTCTGAGTGTTCCTTGAGATGCTGTTGCTGTGT < 41bp 0.848653571821548 0.602266495819226 0.9175837 0.24914023 prediction 0.492774152004643 Functional Loss - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86919814 chrX:86919816 stopgain 0.998 1 23 hm5C_associated_SNPs_66563 0 0 0 0 1 KLHL4 chrX:86919764 3'AG 86919764 Downstream 53bp
chr15 45427483 45427483 1 + G T COAD 45427480 + 45427460 45427500 41 GGACGGAGTCCCAGCAATCCCCGGGACCCGGTGAGGCGGGG GGACGGAGTCCCAGCAATCCCCGTGACCCGGTGAGGCGGGG < 41bp 0.746386675982694 0.353724612137572 0.8913406 0.5714253 prediction 0.492773351965388 Functional Loss - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45427480 chr15:45427483 synonymous SNV . 0 24 hm5C_associated_SNPs_66564 0 0 0 0 1 DUOX1 chr15:45427489 5'GT 45427489 Upstream 7bp
chr8 99960586 99960586 1 + G C rs565281476 99960582 + 99960562 99960602 41 GGCGCGGCGGCAGCGCAGCGCGTGGGATCTCACGACCCATC GGCGCGGCGGCAGCGCAGCGCGTGCGATCTCACGACCCATC < 41bp 0.836957409878915 0.590575239444241 0.7557401 0.35511154 prediction 0.492764340869348 Functional Loss - OSR2 ENSG00000164920 CDS Human protein_coding chr8:99960582 chr8:99960586 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_66566 0 0 0 0 1 OSR2 chr8:99960649 5'GT 99960649 Upstream 64bp
chr11 121477578 121477578 1 + A T LUAD 121477574 + 121477554 121477594 41 TGCCAGATGCCCCTCGAAATCTCCAGCTGTCACTCCCCAGG TGCCAGATGCCCCTCGAAATCTCCTGCTGTCACTCCCCAGG < 41bp 0.746378900003177 0.400350914320384 0.9310165 0.10530764 prediction 0.492757800006355 Functional Loss - SORL1 ENSG00000137642 CDS Human protein_coding chr11:121477574 chr11:121477578 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_66567 0 0 1 0 2 SORL1 chr11:121477554 3'AG 121477554 Downstream 25bp
chr11 121477578 121477578 1 + A T LUAD 121477574 + 121477554 121477594 41 TGCCAGATGCCCCTCGAAATCTCCAGCTGTCACTCCCCAGG TGCCAGATGCCCCTCGAAATCTCCTGCTGTCACTCCCCAGG < 41bp 0.746378900003177 0.400350914320384 0.9310165 0.10530764 prediction 0.492757800006355 Functional Loss - SORL1 ENSG00000137642 CDS Human protein_coding chr11:121477574 chr11:121477578 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_66567 0 0 1 0 2 SORL1 chr11:121477666 5'GT 121477666 Upstream 89bp
chr13 24233219 24233219 1 + C T rs61756242 24233217 + 24233197 24233237 41 AAGGTCAACCTCGTGAAGATCGCGTCCACGGCCTCCAGCCC AAGGTCAACCTCGTGAAGATCGTGTCCACGGCCTCCAGCCC < 41bp 0.74637415669586 0.471759985690065 0.28122953 0.2511263 prediction 0.49274831339172 Functional Loss - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24233217 chr13:24233219 nonsynonymous SNV 0.745 2 23 hm5C_associated_SNPs_66568 0 0 1 0 1 TNFRSF19 chr13:24233189 3'AG 24233189 Downstream 31bp
chr20 43945417 43945417 1 + A C STAD 43945413 + 43945393 43945433 41 CGCGCTCCCATCACAATCCCCATGAGCCTGGTGCGCGCCGA CGCGCTCCCATCACAATCCCCATGCGCCTGGTGCGCGCCGA < 41bp 0.746374081085058 0.367027674260161 0.17653745 0.09835863 prediction 0.492748162170115 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43945413 chr20:43945417 nonsynonymous SNV 0.940 1 25 hm5C_associated_SNPs_66569 0 0 0 0 1 RBPJL chr20:43945326 3'AG 43945326 Downstream 92bp
chr1 36757044 36757044 1 + G T STAD 36757042 + 36757022 36757062 41 TCCATAGCAACAAAAAGGAACAGGAGTTTCGTTCCATTTTC TCCATAGCAACAAAAAGGAACATGAGTTTCGTTCCATTTTC < 41bp 0.746374004762516 0.402074412946426 0.40241823 0.16414392 prediction 0.492748009525031 Functional Loss - THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36757042 chr1:36757044 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_66570 0 0 1 0 1 THRAP3 chr1:36756975 3'AG 36756975 Downstream 70bp
chr11 111908054 111908054 1 + G T GBM 111908051 + 111908031 111908071 41 AATCCTGGTCCCTGAAGGCACAAGAGATGTCCCTCTAGGAA AATCCTGGTCCCTGAAGGCACAATAGATGTCCCTCTAGGAA < 41bp 0.746372615415468 0.350159023399152 0.26287755 0.0664171 prediction 0.492745230830935 Functional Loss - DLAT ENSG00000150768 CDS Human protein_coding chr11:111908051 chr11:111908054 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_66571 0 0 1 0 1 DLAT chr11:111907997 3'AG 111907997 Downstream 58bp
chr19 19616217 19616217 1 + C T LUAD 19616215 + 19616195 19616235 41 AGAGCTCCTCGGCCGTGGACCGCCAGCGAGAGTACCTCCTG AGAGCTCCTCGGCCGTGGACCGTCAGCGAGAGTACCTCCTG < 41bp 0.794103983735514 0.547732573130685 0.4970754 0.10248345 prediction 0.492742821209658 Functional Loss - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19616215 chr19:19616217 synonymous SNV . 0 23 hm5C_associated_SNPs_66572 0 0 1 0 1 GATAD2A chr19:19616153 3'AG 19616153 Downstream 65bp
chr19 40485867 40485867 1 + A C BLCA 40485863 + 40485843 40485883 41 GACGAGATTGATGCCATCGCCACCAAGAGATTCGATGCTCA GACGAGATTGATGCCATCGCCACCCAGAGATTCGATGCTCA < 41bp 0.746355437821526 0.306694661081414 0.059295446 0.06518364 prediction 0.492710875643052 Functional Loss - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40485863 chr19:40485867 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_66574 0 0 1 0 1 PSMC4 chr19:40485891 5'GT 40485891 Upstream 25bp
chr9 2652886 2652886 1 + T C COAD 2652885 + 2652865 2652905 41 TCCTGTGTACTTGAAAACCACTGAAGAGGACCTCTCCATAG TCCTGTGTACTTGAAAACCACCGAAGAGGACCTCTCCATAG < 41bp 0.754010877469155 0.507661198354891 0.12072101 0.031265616 prediction 0.492699358228528 Functional Loss - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2652885 chr9:2652886 synonymous SNV . 0 22 hm5C_associated_SNPs_66576 0 0 1 1 1 VLDLR chr9:2652949 5'GT 2652949 Upstream 64bp
chr6 46797136 46797136 1 + G T SKCM 46797133 + 46797113 46797153 41 TTCAGCACCAGCTCGGGGTCCGCGGAAGAGGCAGCCCTACT TTCAGCACCAGCTCGGGGTCCGCTGAAGAGGCAGCCCTACT < 41bp 0.746348381714857 0.344696835767855 0.8392794 0.4136793 prediction 0.492696763429715 Functional Loss - MEP1A ENSG00000112818 CDS Human protein_coding chr6:46797133 chr6:46797136 synonymous SNV . 0 24 hm5C_associated_SNPs_66577 0 0 0 0 1 MEP1A chr6:46797093 3'AG 46797093 Downstream 44bp
chr17 59544958 59544958 1 + G T LUAD 59544956 + 59544936 59544976 41 CCACAGGAGCCCACTGGATGCGGCAGCTGGTCTCCTTCCAG CCACAGGAGCCCACTGGATGCGTCAGCTGGTCTCCTTCCAG < 41bp 0.896427040421049 0.650081330147062 0.8501204 0.22059551 prediction 0.492691420547974 Functional Loss - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59544956 chr17:59544958 synonymous SNV . 0 23 hm5C_associated_SNPs_66578 0 0 0 0 2 TBX4 chr17:59544871 3'AG 59544871 Downstream 88bp
chr17 59544958 59544958 1 + G T LUAD 59544956 + 59544936 59544976 41 CCACAGGAGCCCACTGGATGCGGCAGCTGGTCTCCTTCCAG CCACAGGAGCCCACTGGATGCGTCAGCTGGTCTCCTTCCAG < 41bp 0.896427040421049 0.650081330147062 0.8501204 0.22059551 prediction 0.492691420547974 Functional Loss - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59544956 chr17:59544958 synonymous SNV . 0 23 hm5C_associated_SNPs_66578 0 0 0 0 2 TBX4 chr17:59545018 5'GT 59545018 Upstream 61bp
chr9 124936808 124936808 1 + G T UCEC 124936805 + 124936785 124936825 41 ACTCACCAATATGGACCCACCTAGAAAAATCCCCAAGGGCT ACTCACCAATATGGACCCACCTATAAAAATCCCCAAGGGCT < 41bp 0.746341053354947 0.368306188302976 0.201211 0.3906146 prediction 0.492682106709894 Functional Loss - MORN5 ENSG00000185681 CDS Human protein_coding chr9:124936805 chr9:124936808 nonsynonymous SNV 0.977 1 24 hm5C_associated_SNPs_66580 0 0 0 0 2 MORN5 chr9:124936775 3'AG 124936775 Downstream 34bp
chr9 124936808 124936808 1 + G T UCEC 124936805 + 124936785 124936825 41 ACTCACCAATATGGACCCACCTAGAAAAATCCCCAAGGGCT ACTCACCAATATGGACCCACCTATAAAAATCCCCAAGGGCT < 41bp 0.746341053354947 0.368306188302976 0.201211 0.3906146 prediction 0.492682106709894 Functional Loss - MORN5 ENSG00000185681 CDS Human protein_coding chr9:124936805 chr9:124936808 nonsynonymous SNV 0.977 1 24 hm5C_associated_SNPs_66580 0 0 0 0 2 MORN5 chr9:124936906 5'GT 124936906 Upstream 99bp
chr7 18767305 18767305 1 + A T UCEC 18767301 + 18767281 18767321 41 GAGAAACACCGTCTCGTCTCCAGGACTCACTCTTCCCCTGC GAGAAACACCGTCTCGTCTCCAGGTCTCACTCTTCCCCTGC < 41bp 0.75936600858027 0.513034573023885 0.45963246 0.7894255 prediction 0.492662871112771 Functional Loss - HDAC9 ENSG00000048052 CDS Human protein_coding chr7:18767301 chr7:18767305 nonsynonymous SNV 0.931 0 25 hm5C_associated_SNPs_66581 0 0 0 0 1 HDAC9 chr7:18767380 5'GT 18767380 Upstream 76bp
chr11 65164369 65164369 1 + G A UCEC 65164366 + 65164346 65164386 41 GGGGCCAGGGCCGGGCCGGGCGAGCAGGGCCTGCTGAACGC GGGGCCAGGGCCGGGCCGGGCGAACAGGGCCTGCTGAACGC < 41bp 0.746316403980395 0.492674503986325 0.7591278 0.48916596 prediction 0.49263280796079 Functional Loss - FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65164366 chr11:65164369 synonymous SNV . 0 24 hm5C_associated_SNPs_66587 0 0 0 0 1 FRMD8 chr11:65164270 3'AG 65164270 Downstream 100bp
chr2 96933114 96933114 1 + G T LUAD 96933112 + 96933092 96933132 41 AAGGCCACCAGCGCACCGTGCGGAAGGTAGCCTGGTCCCCC AAGGCCACCAGCGCACCGTGCGTAAGGTAGCCTGGTCCCCC < 41bp 0.895993457389835 0.649680282820573 0.75074077 0.25845572 prediction 0.492626349138523 Functional Loss - CIAO1 ENSG00000144021 CDS Human protein_coding chr2:96933112 chr2:96933114 synonymous SNV . 0 23 hm5C_associated_SNPs_66588 0 0 1 0 2 CIAO1 chr2:96933059 3'AG 96933059 Downstream 56bp
chr2 96933114 96933114 1 + G T LUAD 96933112 + 96933092 96933132 41 AAGGCCACCAGCGCACCGTGCGGAAGGTAGCCTGGTCCCCC AAGGCCACCAGCGCACCGTGCGTAAGGTAGCCTGGTCCCCC < 41bp 0.895993457389835 0.649680282820573 0.75074077 0.25845572 prediction 0.492626349138523 Functional Loss - CIAO1 ENSG00000144021 CDS Human protein_coding chr2:96933112 chr2:96933114 synonymous SNV . 0 23 hm5C_associated_SNPs_66588 0 0 1 0 2 CIAO1 chr2:96933207 5'GT 96933207 Upstream 94bp
chr19 14153268 14153268 1 + G T OV 14153265 + 14153245 14153285 41 CTCGCCTGTCTCTCCCCCAGCTGGAACCGGAGCTGAAGACC CTCGCCTGTCTCTCCCCCAGCTGTAACCGGAGCTGAAGACC < 41bp 0.746305213358462 0.350641334671753 0.22887003 0.18801972 prediction 0.492610426716924 Functional Loss - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14153265 chr19:14153268 stopgain 0.150 0 24 hm5C_associated_SNPs_66590 0 0 0 0 1 IL27RA chr19:14153265 3'AG 14153265 Downstream 4bp
chrX 107319363 107319363 1 + A T KIRC 107319359 + 107319339 107319379 41 ATTGGTAGCCTGGTAGGTGCCGCCATCATCATCTCTGTTGT ATTGGTAGCCTGGTAGGTGCCGCCTTCATCATCTCTGTTGT < 41bp 0.883939414284306 0.637641074862608 0.34034914 0.24402472 prediction 0.492596678843396 Functional Loss - VSIG1 ENSG00000101842 CDS Human protein_coding chrX:107319359 chrX:107319363 nonsynonymous SNV 0.078 1 25 hm5C_associated_SNPs_66591 0 0 0 0 2 VSIG1 chrX:107319307 3'AG 107319307 Downstream 57bp
chrX 107319363 107319363 1 + A T KIRC 107319359 + 107319339 107319379 41 ATTGGTAGCCTGGTAGGTGCCGCCATCATCATCTCTGTTGT ATTGGTAGCCTGGTAGGTGCCGCCTTCATCATCTCTGTTGT < 41bp 0.883939414284306 0.637641074862608 0.34034914 0.24402472 prediction 0.492596678843396 Functional Loss - VSIG1 ENSG00000101842 CDS Human protein_coding chrX:107319359 chrX:107319363 nonsynonymous SNV 0.078 1 25 hm5C_associated_SNPs_66591 0 0 0 0 2 VSIG1 chrX:107319448 5'GT 107319448 Upstream 86bp
chr19 13192511 13192511 1 + G T PAAD 13192509 + 13192489 13192529 41 TGCAGGGAGCCCCCGGGCCACAGCATCAGCCCTGCACTTCC TGCAGGGAGCCCCCGGGCCACATCATCAGCCCTGCACTTCC < 41bp 0.746295677339161 0.397408835841103 0.13874054 0.024776667 prediction 0.492591354678321 Functional Loss - NFIX ENSG00000008441 CDS Human protein_coding chr19:13192509 chr19:13192511 nonsynonymous SNV 0.853 3 23 hm5C_associated_SNPs_66592 0 0 0 0 1 NFIX chr19:13192494 3'AG 13192494 Downstream 18bp
chr1 118479447 118479447 1 + A T LUAD 118479443 + 118479423 118479463 41 ATGAAAGTGGTCTGTACCGTCTAAAGGGGCACAAGGATGCC ATGAAAGTGGTCTGTACCGTCTAATGGGGCACAAGGATGCC < 41bp 0.746294586480387 0.420341204117243 0.17922187 0.10981715 prediction 0.492589172960773 Functional Loss - WDR3 ENSG00000065183 CDS Human protein_coding chr1:118479443 chr1:118479447 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_66593 0 0 1 0 2 WDR3 chr1:118479392 3'AG 118479392 Downstream 56bp
chr1 118479447 118479447 1 + A T LUAD 118479443 + 118479423 118479463 41 ATGAAAGTGGTCTGTACCGTCTAAAGGGGCACAAGGATGCC ATGAAAGTGGTCTGTACCGTCTAATGGGGCACAAGGATGCC < 41bp 0.746294586480387 0.420341204117243 0.17922187 0.10981715 prediction 0.492589172960773 Functional Loss - WDR3 ENSG00000065183 CDS Human protein_coding chr1:118479443 chr1:118479447 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_66593 0 0 1 0 2 WDR3 chr1:118479510 5'GT 118479510 Upstream 64bp
chr5 133477961 133477961 1 + G T BRCA 133477959 + 133477939 133477979 41 CCCGGCCATTGTGCCCCCCTCAGGGAAGCAGGAGCTGCAGC CCCGGCCATTGTGCCCCCCTCATGGAAGCAGGAGCTGCAGC < 41bp 0.896031855667652 0.649738861518545 0.9341669 0.82794833 prediction 0.492585988298215 Functional Loss - TCF7 ENSG00000081059 CDS Human protein_coding chr5:133477959 chr5:133477961 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_66594 0 0 1 0 2 TCF7 chr5:133477876 3'AG 133477876 Downstream 86bp
chr5 133477961 133477961 1 + G T BRCA 133477959 + 133477939 133477979 41 CCCGGCCATTGTGCCCCCCTCAGGGAAGCAGGAGCTGCAGC CCCGGCCATTGTGCCCCCCTCATGGAAGCAGGAGCTGCAGC < 41bp 0.896031855667652 0.649738861518545 0.9341669 0.82794833 prediction 0.492585988298215 Functional Loss - TCF7 ENSG00000081059 CDS Human protein_coding chr5:133477959 chr5:133477961 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_66594 0 0 1 0 2 TCF7 chr5:133477995 5'GT 133477995 Upstream 35bp
chr17 40666448 40666448 1 + C T DLBC 40666446 + 40666426 40666466 41 CTCCTGATCATGGAGGGCCTCTCGGCCTTTCTCCACGCACT CTCCTGATCATGGAGGGCCTCTTGGCCTTTCTCCACGCACT < 41bp 0.746285303322866 0.48361854849758 0.2661367 0.059579223 prediction 0.492570606645731 Functional Loss - ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40666446 chr17:40666448 nonsynonymous SNV 0.977 5 23 hm5C_associated_SNPs_66596 0 0 1 0 1 ATP6V0A1 chr17:40666478 5'GT 40666478 Upstream 31bp
chr1 161641229 161641229 1 + G C LUSC 161641225 + 161641205 161641245 41 AAACTCGAGCCCCAGTGGATCAACGTGCTCCAGGAGGACTC AAACTCGAGCCCCAGTGGATCAACCTGCTCCAGGAGGACTC < 41bp 0.746272120401296 0.448464540358399 0.13866305 0.13199678 prediction 0.492544240802591 Functional Loss - FCGR2B ENSG00000072694 CDS Human protein_coding chr1:161641225 chr1:161641229 nonsynonymous SNV 0.526 4 25 hm5C_associated_SNPs_66602 0 0 0 0 2 FCGR2B chr1:161641182 3'AG 161641182 Downstream 48bp
chr1 161641229 161641229 1 + G C LUSC 161641225 + 161641205 161641245 41 AAACTCGAGCCCCAGTGGATCAACGTGCTCCAGGAGGACTC AAACTCGAGCCCCAGTGGATCAACCTGCTCCAGGAGGACTC < 41bp 0.746272120401296 0.448464540358399 0.13866305 0.13199678 prediction 0.492544240802591 Functional Loss - FCGR2B ENSG00000072694 CDS Human protein_coding chr1:161641225 chr1:161641229 nonsynonymous SNV 0.526 4 25 hm5C_associated_SNPs_66602 0 0 0 0 2 FCGR2B chr1:161641185 3'AG 161641185 Downstream 45bp
chr3 38316512 38316512 1 + C T CESC 38316510 + 38316490 38316530 41 GGTGGGGCCCTCATGGAGGACGCAGGCCGTGGTCCTGGCCC GGTGGGGCCCTCATGGAGGACGTAGGCCGTGGTCCTGGCCC < 41bp 0.746266565631217 0.496949760242648 0.30070487 0.24528837 prediction 0.492533131262435 Functional Loss - SLC22A13 ENSG00000172940 CDS Human protein_coding chr3:38316510 chr3:38316512 stopgain 0.000 0 23 hm5C_associated_SNPs_66606 0 0 0 0 1 SLC22A13 chr3:38316480 3'AG 38316480 Downstream 33bp
chrX 21545074 21545074 1 + G T UCEC 21545072 + 21545052 21545092 41 AAAGAGACAGTTCTGCCCTCCAGGATCTCTACATTCCCCCT AAAGAGACAGTTCTGCCCTCCATGATCTCTACATTCCCCCT < 41bp 0.746261501734746 0.400185945088432 0.37054932 0.059414774 prediction 0.492523003469491 Functional Loss - CNKSR2 ENSG00000149970 CDS Human protein_coding chrX:21545072 chrX:21545074 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_66608 0 0 0 0 1 CNKSR2 chrX:21545118 5'GT 21545118 Upstream 45bp
chr17 59556082 59556082 1 + G T LUAD 59556080 + 59556060 59556100 41 GGCTCCAAAAACACTGCTTTCTGCACCCACGTGTTCCCAGA GGCTCCAAAAACACTGCTTTCTTCACCCACGTGTTCCCAGA < 41bp 0.746258725157608 0.397909518538878 0.2693418 0.20936376 prediction 0.492517450315216 Functional Loss - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59556080 chr17:59556082 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_66609 0 0 0 0 2 TBX4 chr17:59555988 3'AG 59555988 Downstream 95bp
chr17 59556082 59556082 1 + G T LUAD 59556080 + 59556060 59556100 41 GGCTCCAAAAACACTGCTTTCTGCACCCACGTGTTCCCAGA GGCTCCAAAAACACTGCTTTCTTCACCCACGTGTTCCCAGA < 41bp 0.746258725157608 0.397909518538878 0.2693418 0.20936376 prediction 0.492517450315216 Functional Loss - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59556080 chr17:59556082 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_66609 0 0 0 0 2 TBX4 chr17:59556140 5'GT 59556140 Upstream 59bp
chr5 251561 251561 1 + C T PAAD 251559 + 251539 251579 41 GCACGGAAGGAGTCACGGGGCGCGCATGCCAGGGAAGACTA GCACGGAAGGAGTCACGGGGCGTGCATGCCAGGGAAGACTA < 41bp 0.7462475844474 0.486729391457916 0.17473859 0.37206358 prediction 0.492495168894801 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:251559 chr5:251561 nonsynonymous SNV 0.004 4 23 hm5C_associated_SNPs_66610 0 0 1 0 1 SDHA chr5:251583 5'GT 251583 Upstream 23bp
chr2 71357813 71357813 1 + G T LUSC 71357810 + 71357790 71357830 41 ACAGCCATGGCGCCGCAGGTCTGGCGTCGACGGACCCTGGA ACAGCCATGGCGCCGCAGGTCTGTCGTCGACGGACCCTGGA < 41bp 0.912529880906058 0.666284699293352 0.41899556 0.15745938 prediction 0.492490363225413 Functional Loss - MPHOSPH10 ENSG00000124383 CDS Human protein_coding chr2:71357810 chr2:71357813 nonsynonymous SNV 0.432 2 24 hm5C_associated_SNPs_66612 0 0 1 0 1 MPHOSPH10 chr2:71357884 5'GT 71357884 Upstream 72bp
chr20 35807664 35807664 1 - C T UCEC 35807667 - 35807647 35807687 41 GCCACAGGGGACGCCAGGGACTCGCGGCAGGCTCTGCGGGC GCCACAGGGGACGCCAGGGACTCACGGCAGGCTCTGCGGGC < 41bp 0.749162075759847 0.502917953719531 0.30824357 0.16430733 prediction 0.492488244080631 Functional Loss - MROH8 ENSG00000101353 CDS Human protein_coding chr20:35807667 chr20:35807664 synonymous SNV . 0 24 hm5C_associated_SNPs_66613 0 0 0 0 1 MROH8 chr20:35807626 5'GT 35807626 Upstream 39bp
chr17 21825514 21825514 1 + A T LUSC 21825510 + 21825490 21825530 41 GGCCGACTAGGATGACGAAACCACAGGCAGAGTCCGGGGAA GGCCGACTAGGATGACGAAACCACTGGCAGAGTCCGGGGAA < 41bp 0.746243967227688 0.474704321591707 0.19107729 0.2086736 prediction 0.492487934455375 Functional Loss - FAM27E5 ENSG00000178130 ncRNA_exonic Human lincRNA chr17:21825510 chr17:21825514 . . 0 25 hm5C_associated_SNPs_66614 0 0 0 0 1 FAM27E5 chr17:21825574 5'GT 21825574 Upstream 61bp
chr16 25180465 25180465 1 + G T LUSC 25180462 + 25180442 25180482 41 GGTGATCGGTTTGGGCAGATCATGATTGAAAACCTGCGGAG GGTGATCGGTTTGGGCAGATCATTATTGAAAACCTGCGGAG < 41bp 0.921009343726257 0.674766605753697 0.22805813 0.1780673 prediction 0.492485475945118 Functional Loss - LCMT1 ENSG00000205629 CDS Human protein_coding chr16:25180462 chr16:25180465 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_66615 0 0 1 0 2 LCMT1 chr16:25180433 3'AG 25180433 Downstream 33bp
chr16 25180465 25180465 1 + G T LUSC 25180462 + 25180442 25180482 41 GGTGATCGGTTTGGGCAGATCATGATTGAAAACCTGCGGAG GGTGATCGGTTTGGGCAGATCATTATTGAAAACCTGCGGAG < 41bp 0.921009343726257 0.674766605753697 0.22805813 0.1780673 prediction 0.492485475945118 Functional Loss - LCMT1 ENSG00000205629 CDS Human protein_coding chr16:25180462 chr16:25180465 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_66615 0 0 1 0 2 LCMT1 chr16:25180534 5'GT 25180534 Upstream 70bp
chr16 46960867 46960867 1 + T C LIHC 46960866 + 46960846 46960886 41 ATGGCTCCAGACATGTTCTACTGCATGAAGCTCCTGGAGGA ATGGCTCCAGACATGTTCTACCGCATGAAGCTCCTGGAGGA < 41bp 0.746238564796943 0.475493019259096 0.08030352 0.048162133 prediction 0.492477129593885 Functional Loss - GPT2 ENSG00000166123 CDS Human protein_coding chr16:46960866 chr16:46960867 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_66619 0 0 1 0 2 GPT2 chr16:46960837 3'AG 46960837 Downstream 31bp
chr16 46960867 46960867 1 + T C LIHC 46960866 + 46960846 46960886 41 ATGGCTCCAGACATGTTCTACTGCATGAAGCTCCTGGAGGA ATGGCTCCAGACATGTTCTACCGCATGAAGCTCCTGGAGGA < 41bp 0.746238564796943 0.475493019259096 0.08030352 0.048162133 prediction 0.492477129593885 Functional Loss - GPT2 ENSG00000166123 CDS Human protein_coding chr16:46960866 chr16:46960867 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_66619 0 0 1 0 2 GPT2 chr16:46960949 5'GT 46960949 Upstream 83bp
chr9 139929153 139929153 1 + G A HNSC 139929150 + 139929130 139929170 41 AGGCTGTCCTGCCACGCCTGCGGGTGACCCGGCCTCTGGTG AGGCTGTCCTGCCACGCCTGCGGATGACCCGGCCTCTGGTG < 41bp 0.746228713340053 0.49228973045871 0.94744956 0.9351104 prediction 0.492457426680106 Functional Loss - C9orf139 ENSG00000180539 CDS Human antisense chr9:139929150 chr9:139929153 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_66622 0 0 0 0 1 C9orf139 chr9:139929102 3'AG 139929102 Downstream 52bp
chr15 97327388 97327388 1 + C T BLCA 97327386 + 97327366 97327406 41 TGTGTTCTCTTCTGCAGAACCTCGTCGCGACATTTCTCAGA TGTGTTCTCTTCTGCAGAACCTTGTCGCGACATTTCTCAGA < 41bp 0.746224184919984 0.487850294799188 0.029374808 0.02206719 prediction 0.492448369839967 Functional Loss - SPATA8 ENSG00000185594 CDS Human protein_coding chr15:97327386 chr15:97327388 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_66624 0 0 0 0 1 SPATA8 chr15:97327383 3'AG 97327383 Downstream 6bp
chr6 96971119 96971119 1 + C T COAD 96971117 + 96971097 96971137 41 CGATGGAAAGGAATATATTACTCCAGCCCAAATTAGTAAAG CGATGGAAAGGAATATATTACTTCAGCCCAAATTAGTAAAG < 41bp 0.825078268133174 0.578855659873577 0.35642576 0.021088004 prediction 0.492445216519194 Functional Loss - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96971117 chr6:96971119 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_66625 0 0 0 0 2 UFL1 chr6:96971022 3'AG 96971022 Downstream 98bp
chr6 96971119 96971119 1 + C T COAD 96971117 + 96971097 96971137 41 CGATGGAAAGGAATATATTACTCCAGCCCAAATTAGTAAAG CGATGGAAAGGAATATATTACTTCAGCCCAAATTAGTAAAG < 41bp 0.825078268133174 0.578855659873577 0.35642576 0.021088004 prediction 0.492445216519194 Functional Loss - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96971117 chr6:96971119 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_66625 0 0 0 0 2 UFL1 chr6:96971167 5'GT 96971167 Upstream 49bp
chr11 47587452 47587452 1 + C T rs11537751 47587450 + 47587430 47587470 41 TTGCTGAGCCACCTCTTTGCCTCGGCAGCTGGTACAGGACG TTGCTGAGCCACCTCTTTGCCTTGGCAGCTGGTACAGGACG < 41bp 0.783109988634151 0.536896250829607 0.030417114 0.019657463 prediction 0.492427475609087 Functional Loss - PTPMT1 ENSG00000110536 CDS Human protein_coding chr11:47587450 chr11:47587452 nonsynonymous SNV 0.988 3 23 hm5C_associated_SNPs_66629 0 1 1 0 1 PTPMT1 chr11:47587538 5'GT 47587538 Upstream 87bp
chr17 80521412 80521412 1 + C T STAD 80521410 + 80521390 80521430 41 ATCAGCCCTCTGCCCTCCCCCACGGGAACCATCAGGTGCGG ATCAGCCCTCTGCCCTCCCCCATGGGAACCATCAGGTGCGG < 41bp 0.789066323476374 0.542862275184465 0.08851105 0.054988652 prediction 0.492408096583818 Functional Loss - FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80521410 chr17:80521412 nonsynonymous SNV 0.733 5 23 hm5C_associated_SNPs_66632 0 0 1 0 1 FOXK2 chr17:80521424 5'GT 80521424 Upstream 13bp
chr4 25674822 25674822 1 + G A SKCM 25674819 + 25674799 25674839 41 TGATCATGATTGTCAAGATCCTGGGCTCTGTGCTCAAGGGG TGATCATGATTGTCAAGATCCTGAGCTCTGTGCTCAAGGGG < 41bp 0.746202595643409 0.493977677578126 0.37650493 0.17692429 prediction 0.492405191286819 Functional Loss - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25674819 chr4:25674822 nonsynonymous SNV 0.047 1 24 hm5C_associated_SNPs_66635 0 0 0 0 1 SLC34A2 chr4:25674876 5'GT 25674876 Upstream 55bp
chr12 56115030 56115030 1 + G C STAD 56115029 + 56115009 56115049 41 TGCTGTGGTTGCTCAGGGACCGGCAGAGCCTGCCCGCCAGC TGCTGTGGTTGCTCAGGGACCCGCAGAGCCTGCCCGCCAGC < 41bp 0.870466343381585 0.62426545796761 0.8797737 0.1911805 prediction 0.492401770827948 Functional Loss - RDH5 ENSG00000135437 CDS Human protein_coding chr12:56115029 chr12:56115030 nonsynonymous SNV 0.991 1 22 hm5C_associated_SNPs_66636 0 0 0 0 2 BLOC1S1-RDH5 chr12:56114932 3'AG 56114932 Downstream 99bp
chr12 56115030 56115030 1 + G C STAD 56115029 + 56115009 56115049 41 TGCTGTGGTTGCTCAGGGACCGGCAGAGCCTGCCCGCCAGC TGCTGTGGTTGCTCAGGGACCCGCAGAGCCTGCCCGCCAGC < 41bp 0.870466343381585 0.62426545796761 0.8797737 0.1911805 prediction 0.492401770827948 Functional Loss - RDH5 ENSG00000135437 CDS Human protein_coding chr12:56115029 chr12:56115030 nonsynonymous SNV 0.991 1 22 hm5C_associated_SNPs_66636 0 0 0 0 2 BLOC1S1-RDH5 chr12:56114937 3'AG 56114937 Downstream 94bp
chr8 87541223 87541223 1 + G T STAD 87541220 + 87541200 87541240 41 TGCTTGAATCCCCAATTTTCCAAGACATTTATTATTGATTA TGCTTGAATCCCCAATTTTCCAATACATTTATTATTGATTA < 41bp 0.746197777875043 0.385811665964563 0.52079046 0.1295022 prediction 0.492395555750085 Functional Loss - CPNE3 ENSG00000085719 CDS Human protein_coding chr8:87541220 chr8:87541223 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_66637 0 0 1 0 1 CPNE3 chr8:87541173 3'AG 87541173 Downstream 51bp
chr12 113448262 113448262 1 + G T BLCA 113448260 + 113448240 113448280 41 CATCCAGAAGCCATAGAATCCTGAATAATAATTCTAAAAGA CATCCAGAAGCCATAGAATCCTTAATAATAATTCTAAAAGA < 41bp 0.786658532585834 0.540464282343514 0.03376481 0.026537567 prediction 0.49238850048464 Functional Loss - OAS2 ENSG00000111335 CDS Human protein_coding chr12:113448260 chr12:113448262 synonymous SNV . 0 23 hm5C_associated_SNPs_66640 0 0 0 0 1 OAS2 chr12:113448179 3'AG 113448179 Downstream 84bp
chr6 39033500 39033500 1 + C T rs144122530 39033498 + 39033478 39033518 41 CCACCCCAGTGCCGCAGGGCCACGTGTACCGGTTCTGCACA CCACCCCAGTGCCGCAGGGCCATGTGTACCGGTTCTGCACA < 41bp 0.746192883516018 0.481511700555931 0.13574523 0.16153026 prediction 0.492385767032036 Functional Loss - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39033498 chr6:39033500 synonymous SNV . 0 23 hm5C_associated_SNPs_66642 0 0 0 2 1 GLP1R chr6:39033487 3'AG 39033487 Downstream 14bp
chr12 93150131 93150131 1 + A T STAD 93150127 + 93150107 93150147 41 GAAAACATCTTGTCACCAACCAGCAGACACCTTCTCTATGA GAAAACATCTTGTCACCAACCAGCTGACACCTTCTCTATGA < 41bp 0.86121741936923 0.615029674199778 0.068495005 0.058396667 prediction 0.492375490338904 Functional Loss - PLEKHG7 ENSG00000187510 CDS Human protein_coding chr12:93150127 chr12:93150131 stopgain 0.954 1 25 hm5C_associated_SNPs_66644 0 0 0 0 1 PLEKHG7 chr12:93150167 5'GT 93150167 Upstream 37bp
chr21 45798932 45798932 1 + C T COAD 45798930 + 45798910 45798950 41 CCCTGTGTGGTTGTGGAGGGCTCGGGCCGCGTGGCCGACGT CCCTGTGTGGTTGTGGAGGGCTTGGGCCGCGTGGCCGACGT < 41bp 0.79410961934737 0.547922273730643 0.61644447 0.5502987 prediction 0.492374691233454 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45798930 chr21:45798932 nonsynonymous SNV 0.909 4 23 hm5C_associated_SNPs_66645 0 0 0 0 1 TRPM2 chr21:45798880 3'AG 45798880 Downstream 53bp
chr17 40766300 40766300 1 + C T STAD 40766298 + 40766278 40766318 41 GTGGCCAGCGTGAGGAAGACCACGGTCCTGGATGTCATGAG GTGGCCAGCGTGAGGAAGACCATGGTCCTGGATGTCATGAG < 41bp 0.806944692254896 0.560759656090302 0.8396869 0.51686656 prediction 0.492370072329188 Functional Loss - TUBG1 ENSG00000131462 CDS Human protein_coding chr17:40766298 chr17:40766300 nonsynonymous SNV 0.975 3 23 hm5C_associated_SNPs_66646 0 0 1 0 1 TUBG1 chr17:40766278 3'AG 40766278 Downstream 23bp
chr2 99234698 99234698 1 + G T SARC 99234695 + 99234675 99234715 41 GCACCTCTGATTCTGCTCTACGGGCTTTCCCTGGCACTGGG GCACCTCTGATTCTGCTCTACGGTCTTTCCCTGGCACTGGG < 41bp 0.74618310498772 0.358336069055869 0.31005126 0.11964646 prediction 0.492366209975439 Functional Loss - UNC50 ENSG00000115446 CDS Human protein_coding chr2:99234695 chr2:99234698 synonymous SNV . 0 24 hm5C_associated_SNPs_66648 0 0 1 0 1 UNC50 chr2:99234631 3'AG 99234631 Downstream 68bp
chr11 65004286 65004286 1 + G T LUAD 65004284 + 65004264 65004304 41 TGGGGCCACCGCAATCCTGGCTGGGCTGGCCGTCTGCGTCC TGGGGCCACCGCAATCCTGGCTTGGCTGGCCGTCTGCGTCC < 41bp 0.746181629199186 0.39984542967956 0.5700429 0.17390695 prediction 0.492363258398373 Functional Loss - SLC22A20;POLA2 ENSG00000197847 ncRNA_exonic Human transcribed_unitary_pseudogene chr11:65004284 chr11:65004286 . . 0 23 hm5C_associated_SNPs_66649 0 0 0 0 1 SLC22A20;POLA2 chr11:65004359 5'GT 65004359 Upstream 74bp
chr19 45445558 45445558 1 + C T SKCM 45445556 + 45445536 45445576 41 TGTCCCTCCTCAGAAACAGGCTCCAGGCCCTGCCTGCCCTG TGTCCCTCCTCAGAAACAGGCTTCAGGCCCTGCCTGCCCTG < 41bp 0.755057598535762 0.508879246966145 0.91027784 0.14514598 prediction 0.492356703139234 Functional Loss - APOC4 ENSG00000224916;ENSG00000267467 CDS Human other chr19:45445556 chr19:45445558 synonymous SNV . 0 23 hm5C_associated_SNPs_66651 0 0 0 0 1 APOC4 chr19:45445610 5'GT 45445610 Upstream 53bp
chr19 9490252 9490252 1 + G T SARC 9490250 + 9490230 9490270 41 TCTCCAAGGTGGATCAAGAACAGCTGAAGACAGATGAAAGA TCTCCAAGGTGGATCAAGAACATCTGAAGACAGATGAAAGA < 41bp 0.746171032812763 0.400346449853503 0.74316764 0.1295631 prediction 0.492342065625525 Functional Loss - ZNF177;ZNF559-ZNF177 ENSG00000188629;ENSG00000270011 CDS Human other chr19:9490250 chr19:9490252 nonsynonymous SNV 0.008 1 23 hm5C_associated_SNPs_66654 0 0 1 0 1 ZNF177;ZNF559-ZNF177 chr19:9490295 5'GT 9490295 Upstream 44bp
chr9 95874555 95874555 1 + G T KIRP 95874553 + 95874533 95874573 41 CTGTGGGACTGGCCCTGCTCCTGTACTGCTATCCGCCAGGT CTGTGGGACTGGCCCTGCTCCTTTACTGCTATCCGCCAGGT < 41bp 0.746164127364644 0.411618608309669 0.23450094 0.1148963 prediction 0.492328254729288 Functional Loss - CARD19 ENSG00000165233 CDS Human protein_coding chr9:95874553 chr9:95874555 synonymous SNV . 0 23 hm5C_associated_SNPs_66655 0 0 1 0 2 CARD19 chr9:95874500 3'AG 95874500 Downstream 56bp
chr9 95874555 95874555 1 + G T KIRP 95874553 + 95874533 95874573 41 CTGTGGGACTGGCCCTGCTCCTGTACTGCTATCCGCCAGGT CTGTGGGACTGGCCCTGCTCCTTTACTGCTATCCGCCAGGT < 41bp 0.746164127364644 0.411618608309669 0.23450094 0.1148963 prediction 0.492328254729288 Functional Loss - CARD19 ENSG00000165233 CDS Human protein_coding chr9:95874553 chr9:95874555 synonymous SNV . 0 23 hm5C_associated_SNPs_66655 0 0 1 0 2 CARD19 chr9:95874571 5'GT 95874571 Upstream 17bp
chr8 105361777 105361777 1 + G T STAD 105361774 + 105361754 105361794 41 GCAAGCAGTTTCAAAGCTTGCCAGGGTTTGAGGTTCACTTG GCAAGCAGTTTCAAAGCTTGCCATGGTTTGAGGTTCACTTG < 41bp 0.746159351556427 0.357350809837522 0.89453787 0.32303804 prediction 0.492318703112853 Functional Loss - DCSTAMP ENSG00000164935 CDS Human protein_coding chr8:105361774 chr8:105361777 nonsynonymous SNV 0.375 3 24 hm5C_associated_SNPs_66657 0 0 0 0 1 DCSTAMP chr8:105361809 5'GT 105361809 Upstream 33bp
chr4 40339349 40339349 1 + C T HNSC 40339347 + 40339327 40339367 41 CCATCAGGATCCCCAGTGACCTCGTGTGGAGGCCAGACATC CCATCAGGATCCCCAGTGACCTTGTGTGGAGGCCAGACATC < 41bp 0.80712402154902 0.560966455617665 0.0261361 0.018464923 prediction 0.492315131862711 Functional Loss - CHRNA9 ENSG00000174343 CDS Human protein_coding chr4:40339347 chr4:40339349 synonymous SNV . 0 23 hm5C_associated_SNPs_66659 0 0 0 0 1 CHRNA9 chr4:40339381 5'GT 40339381 Upstream 33bp
chr11 67258296 67258296 1 + C T COAD 67258294 + 67258274 67258314 41 ACTTCAAGCGGGGCAAGGCCCACGCGGCCGTGTGGAATGCC ACTTCAAGCGGGGCAAGGCCCATGCGGCCGTGTGGAATGCC < 41bp 0.767768033482646 0.521617942127528 0.21526924 0.17592514 prediction 0.492300182710236 Functional Loss - AIP ENSG00000110711 CDS Human protein_coding chr11:67258294 chr11:67258296 synonymous SNV . 0 23 hm5C_associated_SNPs_66660 0 0 1 0 1 AIP chr11:67258259 3'AG 67258259 Downstream 38bp
chr19 3531803 3531803 1 + C T COAD 3531801 + 3531781 3531821 41 CTGTCCATGTTGGAGGGCCACACGGCACGCGTCGGTGAGGA CTGTCCATGTTGGAGGGCCACATGGCACGCGTCGGTGAGGA < 41bp 0.769934682900781 0.523785786800327 0.08147642 0.17164591 prediction 0.492297792200907 Functional Loss - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3531801 chr19:3531803 nonsynonymous SNV 0.914 3 23 hm5C_associated_SNPs_66662 0 0 1 0 2 FZR1 chr19:3531712 3'AG 3531712 Downstream 92bp
chr19 3531803 3531803 1 + C T COAD 3531801 + 3531781 3531821 41 CTGTCCATGTTGGAGGGCCACACGGCACGCGTCGGTGAGGA CTGTCCATGTTGGAGGGCCACATGGCACGCGTCGGTGAGGA < 41bp 0.769934682900781 0.523785786800327 0.08147642 0.17164591 prediction 0.492297792200907 Functional Loss - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3531801 chr19:3531803 nonsynonymous SNV 0.914 3 23 hm5C_associated_SNPs_66662 0 0 1 0 2 FZR1 chr19:3531814 5'GT 3531814 Upstream 12bp
chr7 128490926 128490926 1 + C T rs140857707 128490924 + 128490904 128490944 41 GACAACAAGGACGGCACCATCACGGTGAGGTATGCACCCAC GACAACAAGGACGGCACCATCATGGTGAGGTATGCACCCAC < 41bp 0.768207510784254 0.522064283327841 0.89048475 0.89434403 prediction 0.492286454912825 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128490924 chr7:128490926 nonsynonymous SNV 0.949 5 23 hm5C_associated_SNPs_66664 0 0 0 0 2 FLNC chr7:128490857 3'AG 128490857 Downstream 70bp
chr7 128490926 128490926 1 + C T rs140857707 128490924 + 128490904 128490944 41 GACAACAAGGACGGCACCATCACGGTGAGGTATGCACCCAC GACAACAAGGACGGCACCATCATGGTGAGGTATGCACCCAC < 41bp 0.768207510784254 0.522064283327841 0.89048475 0.89434403 prediction 0.492286454912825 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128490924 chr7:128490926 nonsynonymous SNV 0.949 5 23 hm5C_associated_SNPs_66664 0 0 0 0 2 FLNC chr7:128490997 5'GT 128490997 Upstream 72bp
chr15 76630667 76630667 1 + G T PAAD 76630665 + 76630645 76630685 41 CTGGTGATGAGGGCGCGGGACAGCGTGTACCACATCGAGTG CTGGTGATGAGGGCGCGGGACATCGTGTACCACATCGAGTG < 41bp 0.746142231397459 0.393908976700678 0.36195755 0.45892817 prediction 0.492284462794918 Functional Loss - ISL2 ENSG00000159556 CDS Human protein_coding chr15:76630665 chr15:76630667 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_66665 0 0 1 0 1 ISL2 chr15:76630593 3'AG 76630593 Downstream 75bp
chr17 7339584 7339584 1 + G C BLCA 7339583 + 7339563 7339603 41 CTGCTTCGTGGTGGGATTCGCGAGGGCTCCCTGGATCTGGG CTGCTTCGTGGTGGGATTCGCCAGGGCTCCCTGGATCTGGG < 41bp 0.86512109828837 0.6189811260724 0.9253525 0.8321074 prediction 0.492279944431939 Functional Loss - TMEM102 ENSG00000181284 CDS Human protein_coding chr17:7339583 chr17:7339584 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_66666 0 0 1 0 1 TMEM102 chr17:7339513 3'AG 7339513 Downstream 72bp
chr2 182363444 182363444 1 + A C LUAD 182363443 + 182363423 182363463 41 TGGAACTTCTGACGTGATTACAGGAAGCATACAGGTGTCCA TGGAACTTCTGACGTGATTACCGGAAGCATACAGGTGTCCA < 41bp 0.763650644879962 0.51752608709499 0.5414411 0.8288605 prediction 0.492249115569943 Functional Loss - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182363443 chr2:182363444 synonymous SNV . 0 22 hm5C_associated_SNPs_66671 0 0 0 0 2 ITGA4 chr2:182363350 3'AG 182363350 Downstream 95bp
chr2 182363444 182363444 1 + A C LUAD 182363443 + 182363423 182363463 41 TGGAACTTCTGACGTGATTACAGGAAGCATACAGGTGTCCA TGGAACTTCTGACGTGATTACCGGAAGCATACAGGTGTCCA < 41bp 0.763650644879962 0.51752608709499 0.5414411 0.8288605 prediction 0.492249115569943 Functional Loss - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182363443 chr2:182363444 synonymous SNV . 0 22 hm5C_associated_SNPs_66671 0 0 0 0 2 ITGA4 chr2:182363504 5'GT 182363504 Upstream 61bp
chr19 16345076 16345076 1 + C T PRAD 16345074 + 16345054 16345094 41 GCCCTGGGTGCGTTATATCACGCAGAATGGAGGTGAGTGAG GCCCTGGGTGCGTTATATCACGTAGAATGGAGGTGAGTGAG < 41bp 0.753091767637143 0.506971678069832 0.42693037 0.7786021 prediction 0.492240179134622 Functional Loss - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16345074 chr19:16345076 stopgain 0.833 1 23 hm5C_associated_SNPs_66674 0 0 1 0 2 AP1M1 chr19:16345010 3'AG 16345010 Downstream 67bp
chr19 16345076 16345076 1 + C T PRAD 16345074 + 16345054 16345094 41 GCCCTGGGTGCGTTATATCACGCAGAATGGAGGTGAGTGAG GCCCTGGGTGCGTTATATCACGTAGAATGGAGGTGAGTGAG < 41bp 0.753091767637143 0.506971678069832 0.42693037 0.7786021 prediction 0.492240179134622 Functional Loss - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16345074 chr19:16345076 stopgain 0.833 1 23 hm5C_associated_SNPs_66674 0 0 1 0 2 AP1M1 chr19:16345085 5'GT 16345085 Upstream 10bp
chr15 89922410 89922410 1 + G T rs143815615 89922408 + 89922388 89922428 41 GTCTTCCTGCCCACAGCCCGCCGGACCCTCCGTCGCGGCTG GTCTTCCTGCCCACAGCCCGCCTGACCCTCCGTCGCGGCTG < 41bp 0.746117618265274 0.402597461198387 0.774886 0.20320117 prediction 0.492235236530547 Functional Loss - MIR9-3HG ENSG00000255571 ncRNA_exonic Human lincRNA chr15:89922408 chr15:89922410 . . 0 23 hm5C_associated_SNPs_66677 0 0 0 0 1 MIR9-3HG chr15:89922500 5'GT 89922500 Upstream 91bp
chr10 12129620 12129620 1 + C T rs12265659 12129618 + 12129598 12129638 41 AAAGCATGATGGGCTTTTTCCACGAGCTGCTGAAAATGTCG AAAGCATGATGGGCTTTTTCCATGAGCTGCTGAAAATGTCG < 41bp 0.83073023207738 0.584612829340477 0.86487246 0.66406417 prediction 0.492234805473806 Functional Loss - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12129618 chr10:12129620 synonymous SNV . 0 23 hm5C_associated_SNPs_66679 0 0 1 0 1 DHTKD1 chr10:12129534 3'AG 12129534 Downstream 87bp
chr19 42791187 42791187 1 + G T BLCA 42791184 + 42791164 42791204 41 CTGAGTCGGCAGCTGTTGCTCATGAACGGCCACCAGGTGGG CTGAGTCGGCAGCTGTTGCTCATTAACGGCCACCAGGTGGG < 41bp 0.746110298000374 0.349966666445433 0.3974042 0.08969498 prediction 0.492220596000747 Functional Loss - CIC ENSG00000079432 CDS Human protein_coding chr19:42791184 chr19:42791187 stopgain 0.983 0 24 hm5C_associated_SNPs_66681 0 0 1 0 1 CIC chr19:42791158 3'AG 42791158 Downstream 30bp
chr3 147131159 147131159 1 + C T UCEC 147131157 + 147131137 147131177 41 GCAGGTCCACGAATCCTCCTCGCAGGGCTCGCAGCCTTCGC GCAGGTCCACGAATCCTCCTCGTAGGGCTCGCAGCCTTCGC < 41bp 0.746131365083886 0.500021312449457 0.2772046 0.23124051 prediction 0.492220105268858 Functional Loss - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147131157 chr3:147131159 stopgain 0.998 0 23 hm5C_associated_SNPs_66682 1 0 0 0 1 ZIC1 chr3:147131141 3'AG 147131141 Downstream 19bp
chr1 210411368 210411368 1 + A C UCEC 210411364 + 210411344 210411384 41 CATTGTCTCGGAAGGAGCTGCTGAAATTGCTGGGTACCAAA CATTGTCTCGGAAGGAGCTGCTGACATTGCTGGGTACCAAA < 41bp 0.746106619043604 0.326265797035779 0.2561739 0.20238414 prediction 0.492213238087208 Functional Loss - SERTAD4 ENSG00000082497 CDS Human protein_coding chr1:210411364 chr1:210411368 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_66683 0 0 1 0 1 SERTAD4 chr1:210411289 3'AG 210411289 Downstream 80bp
chr17 7710807 7710807 1 + G C BLCA 7710806 + 7710786 7710826 41 AGCTGTATGGGCGGCTATATCGGGTGGTGGAGCCCAAGCGA AGCTGTATGGGCGGCTATATCCGGTGGTGGAGCCCAAGCGA < 41bp 0.779633926494297 0.533531458104228 0.9644401 0.93783 prediction 0.492204936780138 Functional Loss - DNAH2 ENSG00000183914 CDS Human protein_coding chr17:7710806 chr17:7710807 nonsynonymous SNV 0.937 4 22 hm5C_associated_SNPs_66686 0 0 0 0 2 DNAH2 chr17:7710788 3'AG 7710788 Downstream 20bp
chr17 7710807 7710807 1 + G C BLCA 7710806 + 7710786 7710826 41 AGCTGTATGGGCGGCTATATCGGGTGGTGGAGCCCAAGCGA AGCTGTATGGGCGGCTATATCCGGTGGTGGAGCCCAAGCGA < 41bp 0.779633926494297 0.533531458104228 0.9644401 0.93783 prediction 0.492204936780138 Functional Loss - DNAH2 ENSG00000183914 CDS Human protein_coding chr17:7710806 chr17:7710807 nonsynonymous SNV 0.937 4 22 hm5C_associated_SNPs_66686 0 0 0 0 2 DNAH2 chr17:7710904 5'GT 7710904 Upstream 98bp
chrX 147024827 147024827 1 + C T BRCA 147024825 + 147024805 147024845 41 GAAATAGGGGGCACGGCAGACGCGGTCCTGGATATACTTCA GAAATAGGGGGCACGGCAGACGTGGTCCTGGATATACTTCA < 41bp 0.789649113135605 0.543549693678026 0.6941029 0.45323873 prediction 0.492198838915158 Functional Loss - FMR1 ENSG00000102081 CDS Human protein_coding chrX:147024825 chrX:147024827 synonymous SNV . 0 23 hm5C_associated_SNPs_66687 0 0 1 0 1 FMR1 chrX:147024846 5'GT 147024846 Upstream 20bp
chr5 131939124 131939124 1 + T C STAD 131939123 + 131939103 131939143 41 ACTCTTGGGTACAATAATGCCTGAAGAAGAAAGTGCCAAAG ACTCTTGGGTACAATAATGCCCGAAGAAGAAAGTGCCAAAG < 41bp 0.752295525651492 0.506198277053624 0.045936406 0.08067998 prediction 0.492194497195736 Functional Loss - RAD50 ENSG00000113522 CDS Human protein_coding chr5:131939123 chr5:131939124 synonymous SNV . 0 22 hm5C_associated_SNPs_66688 0 0 1 0 1 RAD50 chr5:131939181 5'GT 131939181 Upstream 58bp
chr19 55106178 55106178 1 + C T COAD 55106176 + 55106156 55106196 41 GCTGAGCCAGGCTCTGTGATCACCCAGGGGAGTCCCGTGAC GCTGAGCCAGGCTCTGTGATCATCCAGGGGAGTCCCGTGAC < 41bp 0.78718633019903 0.541093811459749 0.093532085 0.30778313 prediction 0.492185037478562 Functional Loss - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55106176 chr19:55106178 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_66689 0 0 0 0 1 LILRA1 chr19:55106130 3'AG 55106130 Downstream 49bp
chr2 231947621 231947621 1 + G T LUAD 231947618 + 231947598 231947638 41 TCGTTAGACACGGTGGCAGTCTGGGCCTTGGTTTGGCAGCC TCGTTAGACACGGTGGCAGTCTGTGCCTTGGTTTGGCAGCC < 41bp 0.746091517337871 0.360160574896223 0.8630549 0.11153269 prediction 0.492183034675742 Functional Loss - PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231947618 chr2:231947621 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_66690 0 0 1 0 2 PSMD1 chr2:231947597 3'AG 231947597 Downstream 25bp
chr2 231947621 231947621 1 + G T LUAD 231947618 + 231947598 231947638 41 TCGTTAGACACGGTGGCAGTCTGGGCCTTGGTTTGGCAGCC TCGTTAGACACGGTGGCAGTCTGTGCCTTGGTTTGGCAGCC < 41bp 0.746091517337871 0.360160574896223 0.8630549 0.11153269 prediction 0.492183034675742 Functional Loss - PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231947618 chr2:231947621 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_66690 0 0 1 0 2 PSMD1 chr2:231947708 5'GT 231947708 Upstream 88bp
chr1 226016558 226016558 1 + G A rs3738046 226016555 + 226016535 226016575 41 GCCAGGCACGAGGTCCGCAGCCAGGGAGGACGACAGCATCC GCCAGGCACGAGGTCCGCAGCCAAGGAGGACGACAGCATCC < 41bp 0.761785385754264 0.515717724642813 0.40929776 0.2802238 prediction 0.492135322222902 Functional Loss - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226016555 chr1:226016558 nonsynonymous SNV 0.179 0 24 hm5C_associated_SNPs_66694 0 0 1 0 1 EPHX1 chr1:226016613 5'GT 226016613 Upstream 56bp
chr1 67724274 67724274 1 + G T UCEC 67724271 + 67724251 67724291 41 GAACACAAGCCTACAGACTACAAGAAGGAGAATACAGGACC GAACACAAGCCTACAGACTACAATAAGGAGAATACAGGACC < 41bp 0.746063093743456 0.42968010452674 0.18662277 0.047332585 prediction 0.492126187486913 Functional Loss - IL23R ENSG00000162594 CDS Human protein_coding chr1:67724271 chr1:67724274 nonsynonymous SNV 0.037 2 24 hm5C_associated_SNPs_66695 0 0 1 0 1 IL23R chr1:67724228 3'AG 67724228 Downstream 47bp
chr4 154523780 154523780 1 + A T UCEC 154523776 + 154523756 154523796 41 ACCTAGAATTTCGCTTCACTCTCAATGTGACTCTCCCTCAT ACCTAGAATTTCGCTTCACTCTCATTGTGACTCTCCCTCAT < 41bp 0.886846055971216 0.640784867626672 0.20871142 0.10234454 prediction 0.492122376689087 Functional Loss - TMEM131L ENSG00000121210 CDS Human protein_coding chr4:154523776 chr4:154523780 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_66696 0 0 1 0 2 TMEM131L chr4:154523694 3'AG 154523694 Downstream 87bp
chr4 154523780 154523780 1 + A T UCEC 154523776 + 154523756 154523796 41 ACCTAGAATTTCGCTTCACTCTCAATGTGACTCTCCCTCAT ACCTAGAATTTCGCTTCACTCTCATTGTGACTCTCCCTCAT < 41bp 0.886846055971216 0.640784867626672 0.20871142 0.10234454 prediction 0.492122376689087 Functional Loss - TMEM131L ENSG00000121210 CDS Human protein_coding chr4:154523776 chr4:154523780 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_66696 0 0 1 0 2 TMEM131L chr4:154523879 5'GT 154523879 Upstream 100bp
chr16 8862762 8862762 1 + C T rs201397255 8862760 + 8862740 8862780 41 CTGGCCCATCGCACCGTTCCCACGGCTGAAATACCCTCTGG CTGGCCCATCGCACCGTTCCCATGGCTGAAATACCCTCTGG < 41bp 0.807107157037764 0.56104739710015 0.887099 0.7724091 prediction 0.492119519875229 Functional Loss - ABAT ENSG00000183044 CDS Human protein_coding chr16:8862760 chr16:8862762 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_66697 0 0 0 0 2 ABAT chr16:8862682 3'AG 8862682 Downstream 81bp
chr16 8862762 8862762 1 + C T rs201397255 8862760 + 8862740 8862780 41 CTGGCCCATCGCACCGTTCCCACGGCTGAAATACCCTCTGG CTGGCCCATCGCACCGTTCCCATGGCTGAAATACCCTCTGG < 41bp 0.807107157037764 0.56104739710015 0.887099 0.7724091 prediction 0.492119519875229 Functional Loss - ABAT ENSG00000183044 CDS Human protein_coding chr16:8862760 chr16:8862762 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_66697 0 0 0 0 2 ABAT chr16:8862830 5'GT 8862830 Upstream 69bp
chr16 88804784 88804784 1 + C T UCEC 88804782 + 88804762 88804802 41 TGATGGGAAAGTGGCAGGCCCACCAGGTGCAGAGGGCCAGG TGATGGGAAAGTGGCAGGCCCATCAGGTGCAGAGGGCCAGG < 41bp 0.757910100972932 0.511870574650547 0.41378042 0.3954047 prediction 0.492079052644769 Functional Loss - PIEZO1 ENSG00000103335 CDS Human protein_coding chr16:88804782 chr16:88804784 stopgain 1.000 0 23 hm5C_associated_SNPs_66698 0 0 0 0 1 PIEZO1 chr16:88804813 5'GT 88804813 Upstream 30bp
chr16 2258298 2258298 1 + C T UCEC 2258296 + 2258276 2258316 41 GACTAAGATCCCTGCCCACACGCGCTACGCCCTGCAGTGTC GACTAAGATCCCTGCCCACACGTGCTACGCCCTGCAGTGTC < 41bp 0.762521550898536 0.516486225985246 0.1586349 0.30821115 prediction 0.492070649826579 Functional Loss - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2258296 chr16:2258298 nonsynonymous SNV 0.792 4 23 hm5C_associated_SNPs_66701 0 0 1 0 2 MLST8 chr16:2258211 3'AG 2258211 Downstream 88bp
chr16 2258298 2258298 1 + C T UCEC 2258296 + 2258276 2258316 41 GACTAAGATCCCTGCCCACACGCGCTACGCCCTGCAGTGTC GACTAAGATCCCTGCCCACACGTGCTACGCCCTGCAGTGTC < 41bp 0.762521550898536 0.516486225985246 0.1586349 0.30821115 prediction 0.492070649826579 Functional Loss - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2258296 chr16:2258298 nonsynonymous SNV 0.792 4 23 hm5C_associated_SNPs_66701 0 0 1 0 2 MLST8 chr16:2258335 5'GT 2258335 Upstream 38bp
chr18 48252450 48252450 1 + A C SKCM 48252449 + 48252429 48252469 41 CCCTGAGGACGAGCCCACCTCACAACACCCCTTCCGCATTG CCCTGAGGACGAGCCCACCTCCCAACACCCCTTCCGCATTG < 41bp 0.771440148077951 0.525406772546795 0.03860593 0.04208827 prediction 0.492066751062312 Functional Loss - MAPK4 ENSG00000141639 CDS Human protein_coding chr18:48252449 chr18:48252450 synonymous SNV . 0 22 hm5C_associated_SNPs_66703 0 0 1 0 1 MAPK4 chr18:48252545 5'GT 48252545 Upstream 96bp
chr9 82336742 82336742 1 + C T UCEC 82336740 + 82336720 82336760 41 TGGACAGGTGGTTTGGACAACACGGTCAGGTCCTGGGACCT TGGACAGGTGGTTTGGACAACATGGTCAGGTCCTGGGACCT < 41bp 0.746030416563314 0.470324222927833 0.19745347 0.1544325 prediction 0.492060833126629 Functional Loss - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82336740 chr9:82336742 nonsynonymous SNV 0.960 4 23 hm5C_associated_SNPs_66704 0 0 0 0 2 TLE4 chr9:82336656 3'AG 82336656 Downstream 87bp
chr9 82336742 82336742 1 + C T UCEC 82336740 + 82336720 82336760 41 TGGACAGGTGGTTTGGACAACACGGTCAGGTCCTGGGACCT TGGACAGGTGGTTTGGACAACATGGTCAGGTCCTGGGACCT < 41bp 0.746030416563314 0.470324222927833 0.19745347 0.1544325 prediction 0.492060833126629 Functional Loss - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82336740 chr9:82336742 nonsynonymous SNV 0.960 4 23 hm5C_associated_SNPs_66704 0 0 0 0 2 TLE4 chr9:82336803 5'GT 82336803 Upstream 62bp
chr1 54360171 54360171 1 + G A rs35678003 54360168 + 54360148 54360188 41 GGGGGTCTGGCCCCAAACTGCCCGGTGGTCCGCCTCTCAGG GGGGGTCTGGCCCCAAACTGCCCAGTGGTCCGCCTCTCAGG < 41bp 0.762914492336802 0.516887290060459 0.77459717 0.24822286 prediction 0.492054404552686 Functional Loss - DIO1 ENSG00000211452 CDS Human protein_coding chr1:54360168 chr1:54360171 synonymous SNV 0.416 0 24 hm5C_associated_SNPs_66705 0 0 1 0 1 DIO1 chr1:54360220 5'GT 54360220 Upstream 50bp
chr10 88414658 88414658 1 + G A COAD 88414655 + 88414635 88414675 41 CCCAGAGCAGCATCTCCAGCCTGGGCCGGCTTCCATCCATC CCCAGAGCAGCATCTCCAGCCTGAGCCGGCTTCCATCCATC < 41bp 0.751651657556015 0.505637706582542 0.77958286 0.37874055 prediction 0.492027901946947 Functional Loss - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88414655 chr10:88414658 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_66709 0 0 0 0 1 OPN4 chr10:88414684 5'GT 88414684 Upstream 27bp
chr1 14104971 14104971 1 + C T SKCM 14104969 + 14104949 14104989 41 CACTTGAGCAGCCGGCCACCCTCCAGGAGGTGGCCAGTCAG CACTTGAGCAGCCGGCCACCCTTCAGGAGGTGGCCAGTCAG < 41bp 0.816979992001091 0.570967670472231 0.9472749 0.23738983 prediction 0.49202464305772 Functional Loss - PRDM2 ENSG00000116731 CDS Human protein_coding chr1:14104969 chr1:14104971 synonymous SNV . 0 23 hm5C_associated_SNPs_66710 0 0 1 0 2 PRDM2 chr1:14104913 3'AG 14104913 Downstream 59bp
chr1 14104971 14104971 1 + C T SKCM 14104969 + 14104949 14104989 41 CACTTGAGCAGCCGGCCACCCTCCAGGAGGTGGCCAGTCAG CACTTGAGCAGCCGGCCACCCTTCAGGAGGTGGCCAGTCAG < 41bp 0.816979992001091 0.570967670472231 0.9472749 0.23738983 prediction 0.49202464305772 Functional Loss - PRDM2 ENSG00000116731 CDS Human protein_coding chr1:14104969 chr1:14104971 synonymous SNV . 0 23 hm5C_associated_SNPs_66710 0 0 1 0 2 PRDM2 chr1:14104992 5'GT 14104992 Upstream 22bp
chr10 79814352 79814352 1 + G C CESC 79814348 + 79814328 79814368 41 ATTTCCCAGGAAGAGAGATGCACAGATGTGAAGAACTCGAA ATTTCCCAGGAAGAGAGATGCACACATGTGAAGAACTCGAA < 41bp 0.746011004516713 0.45615597132509 0.37112895 0.07572812 prediction 0.492022009033425 Functional Loss - RPS24 ENSG00000138326 CDS Human protein_coding chr10:79814348 chr10:79814352 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_66711 0 0 1 0 1 RPS24 chr10:79814289 3'AG 79814289 Downstream 64bp
chr4 755105 755105 1 + C T UCEC 755103 + 755083 755123 41 AGTGTAACAGCAGCAAACTGCGCGGGCTGAAGCGGAAGTGG AGTGTAACAGCAGCAAACTGCGTGGGCTGAAGCGGAAGTGG < 41bp 0.784788742711532 0.538779949159675 0.63041186 0.5068865 prediction 0.492017587103713 Functional Loss - PCGF3 ENSG00000185619 CDS Human protein_coding chr4:755103 chr4:755105 synonymous SNV . 0 23 hm5C_associated_SNPs_66712 0 0 1 0 2 PCGF3 chr4:755067 3'AG 755067 Downstream 39bp
chr4 755105 755105 1 + C T UCEC 755103 + 755083 755123 41 AGTGTAACAGCAGCAAACTGCGCGGGCTGAAGCGGAAGTGG AGTGTAACAGCAGCAAACTGCGTGGGCTGAAGCGGAAGTGG < 41bp 0.784788742711532 0.538779949159675 0.63041186 0.5068865 prediction 0.492017587103713 Functional Loss - PCGF3 ENSG00000185619 CDS Human protein_coding chr4:755103 chr4:755105 synonymous SNV . 0 23 hm5C_associated_SNPs_66712 0 0 1 0 2 PCGF3 chr4:755204 5'GT 755204 Upstream 100bp
chr11 375934 375934 1 + C T UCEC 375932 + 375912 375952 41 GTGGTCAAGGACTTCCCGATCGCCAGATACCAGGGCCTGCA GTGGTCAAGGACTTCCCGATCGTCAGATACCAGGGCCTGCA < 41bp 0.797612635704481 0.551603843713779 0.89381504 0.6075984 prediction 0.492017583981404 Functional Loss - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:375932 chr11:375934 nonsynonymous SNV 0.036 2 23 hm5C_associated_SNPs_66713 0 0 1 0 2 B4GALNT4 chr11:375847 3'AG 375847 Downstream 88bp
chr11 375934 375934 1 + C T UCEC 375932 + 375912 375952 41 GTGGTCAAGGACTTCCCGATCGCCAGATACCAGGGCCTGCA GTGGTCAAGGACTTCCCGATCGTCAGATACCAGGGCCTGCA < 41bp 0.797612635704481 0.551603843713779 0.89381504 0.6075984 prediction 0.492017583981404 Functional Loss - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:375932 chr11:375934 nonsynonymous SNV 0.036 2 23 hm5C_associated_SNPs_66713 0 0 1 0 2 B4GALNT4 chr11:375956 5'GT 375956 Upstream 23bp
chr15 79603665 79603665 1 + G T LUSC 79603663 + 79603643 79603683 41 CTGCGCCGGGCCGAGCAGCCCTGCGGGGCCGAGCTCACCTT CTGCGCCGGGCCGAGCAGCCCTTCGGGGCCGAGCTCACCTT < 41bp 0.896121619792264 0.65012567397742 0.732723 0.38593274 prediction 0.491991891629689 Functional Loss - TMED3 ENSG00000166557 CDS Human protein_coding chr15:79603663 chr15:79603665 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_66720 0 0 1 0 1 TMED3 chr15:79603759 5'GT 79603759 Upstream 95bp
chr20 31890830 31890830 1 + G A SKCM 31890827 + 31890807 31890847 41 AGGTGGCCCAACTGATCGTGCTGGAAGTGTTTCCCTCCAGT AGGTGGCCCAACTGATCGTGCTGAAAGTGTTTCCCTCCAGT < 41bp 0.759089159249865 0.513097337570811 0.4746536 0.39779836 prediction 0.491983643358108 Functional Loss - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31890827 chr20:31890830 nonsynonymous SNV 0.311 3 24 hm5C_associated_SNPs_66721 0 0 0 0 1 BPIFB1 chr20:31890880 5'GT 31890880 Upstream 51bp
chr20 35507502 35507502 1 + C T rs564687679 35507500 + 35507480 35507520 41 CCCTGGAGTCTGGTCTTCTGCACGTCAAGGGACGGTTTCAG CCCTGGAGTCTGGTCTTCTGCATGTCAAGGGACGGTTTCAG < 41bp 0.745990482725677 0.47820538068429 0.16653034 0.116335034 prediction 0.491980965451354 Functional Loss - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35507500 chr20:35507502 nonsynonymous SNV 0.449 4 23 hm5C_associated_SNPs_66724 0 0 0 0 2 TLDC2 chr20:35507444 3'AG 35507444 Downstream 59bp
chr20 35507502 35507502 1 + C T rs564687679 35507500 + 35507480 35507520 41 CCCTGGAGTCTGGTCTTCTGCACGTCAAGGGACGGTTTCAG CCCTGGAGTCTGGTCTTCTGCATGTCAAGGGACGGTTTCAG < 41bp 0.745990482725677 0.47820538068429 0.16653034 0.116335034 prediction 0.491980965451354 Functional Loss - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35507500 chr20:35507502 nonsynonymous SNV 0.449 4 23 hm5C_associated_SNPs_66724 0 0 0 0 2 TLDC2 chr20:35507596 5'GT 35507596 Upstream 95bp
chr6 4952539 4952539 1 + C T GBM 4952537 + 4952517 4952557 41 CAGTGGACGGAAGCTGACAGCGCAGGAGGCGTGTGGCAAGG CAGTGGACGGAAGCTGACAGCGTAGGAGGCGTGTGGCAAGG < 41bp 0.745984036741106 0.482420870844099 0.73445857 0.7707027 prediction 0.491968073482213 Functional Loss - CDYL ENSG00000153046 CDS Human protein_coding chr6:4952537 chr6:4952539 stopgain 0.918 1 23 hm5C_associated_SNPs_66726 0 0 1 0 1 CDYL chr6:4952500 3'AG 4952500 Downstream 40bp
chr15 27772621 27772621 1 + C T UCEC 27772619 + 27772599 27772639 41 ATGACCACCCTGAGCACCATCGCCAGGAAGTCCTTGCCACG ATGACCACCCTGAGCACCATCGTCAGGAAGTCCTTGCCACG < 41bp 0.804028938479043 0.558044982126534 0.36130148 0.26068527 prediction 0.491967912705017 Functional Loss - GABRG3 ENSG00000182256 CDS Human protein_coding chr15:27772619 chr15:27772621 nonsynonymous SNV 0.108 5 23 hm5C_associated_SNPs_66727 0 0 0 0 1 GABRG3 chr15:27772579 3'AG 27772579 Downstream 43bp
chr4 4322395 4322395 1 + C T SKCM 4322393 + 4322373 4322413 41 GTTTTGGGGGATCAGGTGACCTCCGCAGGCATGTCCGCACT GTTTTGGGGGATCAGGTGACCTTCGCAGGCATGTCCGCACT < 41bp 0.745975286319414 0.463492865866125 0.67289555 0.29334348 prediction 0.491950572638829 Functional Loss - ZBTB49 ENSG00000168826 CDS Human protein_coding chr4:4322393 chr4:4322395 synonymous SNV . 0 23 hm5C_associated_SNPs_66731 0 0 1 0 1 ZBTB49 chr4:4322367 3'AG 4322367 Downstream 29bp
chr6 117201750 117201750 1 + C T UCEC 117201748 + 117201728 117201768 41 ATGTGAAGGAGTTTGCTTACCACGGTGCATTCTTTATGCAC ATGTGAAGGAGTTTGCTTACCATGGTGCATTCTTTATGCAC < 41bp 0.745958405772429 0.479785716529186 0.27967536 0.20300421 prediction 0.491916811544857 Functional Loss - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117201748 chr6:117201750 nonsynonymous SNV 0.983 5 23 hm5C_associated_SNPs_66742 0 0 1 0 2 RFX6 chr6:117201707 3'AG 117201707 Downstream 44bp
chr6 117201750 117201750 1 + C T UCEC 117201748 + 117201728 117201768 41 ATGTGAAGGAGTTTGCTTACCACGGTGCATTCTTTATGCAC ATGTGAAGGAGTTTGCTTACCATGGTGCATTCTTTATGCAC < 41bp 0.745958405772429 0.479785716529186 0.27967536 0.20300421 prediction 0.491916811544857 Functional Loss - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117201748 chr6:117201750 nonsynonymous SNV 0.983 5 23 hm5C_associated_SNPs_66742 0 0 1 0 2 RFX6 chr6:117201830 5'GT 117201830 Upstream 81bp
chr13 115002285 115002285 1 + G T PAAD 115002282 + 115002262 115002302 41 TTTTCCCTCCAGAAGAACCCCAGGACATCTATTGGTTGGCT TTTTCCCTCCAGAAGAACCCCAGTACATCTATTGGTTGGCT < 41bp 0.745944280900315 0.366580945545123 0.497824 0.15285662 prediction 0.49188856180063 Functional Loss - CDC16 ENSG00000130177 CDS Human protein_coding chr13:115002282 chr13:115002285 nonsynonymous SNV 0.791 4 24 hm5C_associated_SNPs_66745 0 0 1 0 3 CDC16 chr13:115002274 3'AG 115002274 Downstream 12bp
chr13 115002285 115002285 1 + G T PAAD 115002282 + 115002262 115002302 41 TTTTCCCTCCAGAAGAACCCCAGGACATCTATTGGTTGGCT TTTTCCCTCCAGAAGAACCCCAGTACATCTATTGGTTGGCT < 41bp 0.745944280900315 0.366580945545123 0.497824 0.15285662 prediction 0.49188856180063 Functional Loss - CDC16 ENSG00000130177 CDS Human protein_coding chr13:115002282 chr13:115002285 nonsynonymous SNV 0.791 4 24 hm5C_associated_SNPs_66745 0 0 1 0 3 CDC16 chr13:115002277 3'AG 115002277 Downstream 9bp
chr13 115002285 115002285 1 + G T PAAD 115002282 + 115002262 115002302 41 TTTTCCCTCCAGAAGAACCCCAGGACATCTATTGGTTGGCT TTTTCCCTCCAGAAGAACCCCAGTACATCTATTGGTTGGCT < 41bp 0.745944280900315 0.366580945545123 0.497824 0.15285662 prediction 0.49188856180063 Functional Loss - CDC16 ENSG00000130177 CDS Human protein_coding chr13:115002282 chr13:115002285 nonsynonymous SNV 0.791 4 24 hm5C_associated_SNPs_66745 0 0 1 0 3 CDC16 chr13:115002371 5'GT 115002371 Upstream 87bp
chr19 55086445 55086445 1 + G A SKCM 55086442 + 55086422 55086462 41 TACAGGTGCTATGCTTATGACTCGAACTCTCCCTATGTGTG TACAGGTGCTATGCTTATGACTCAAACTCTCCCTATGTGTG < 41bp 0.747123421383187 0.501182532632289 0.2732429 0.0656085 prediction 0.491881777501797 Functional Loss - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55086442 chr19:55086445 synonymous SNV . 0 24 hm5C_associated_SNPs_66746 0 0 0 0 1 LILRA2 chr19:55086500 5'GT 55086500 Upstream 56bp
chr3 44442728 44442728 1 + G T PRAD 44442725 + 44442705 44442745 41 GCTCCAAGCTTGCATGAACTCGGGCATTTTAATATTCCAAC GCTCCAAGCTTGCATGAACTCGGTCATTTTAATATTCCAAC < 41bp 0.74593561640954 0.36316292826777 0.65224236 0.20203137 prediction 0.491871232819081 Functional Loss - TCAIM ENSG00000179152 CDS Human protein_coding chr3:44442725 chr3:44442728 synonymous SNV . 0 24 hm5C_associated_SNPs_66748 0 0 1 0 1 TCAIM chr3:44442695 3'AG 44442695 Downstream 34bp
chr20 32436358 32436358 1 + G T SARC 32436356 + 32436336 32436376 41 CATTATCAACCATCGAGTTCCAGCGGGAGGCCCTGGAGAAT CATTATCAACCATCGAGTTCCATCGGGAGGCCCTGGAGAAT < 41bp 0.745934674854953 0.397711895785086 0.42268556 0.082948714 prediction 0.491869349709906 Functional Loss - CHMP4B ENSG00000101421 CDS Human protein_coding chr20:32436356 chr20:32436358 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_66749 0 0 1 0 2 CHMP4B chr20:32436273 3'AG 32436273 Downstream 86bp
chr20 32436358 32436358 1 + G T SARC 32436356 + 32436336 32436376 41 CATTATCAACCATCGAGTTCCAGCGGGAGGCCCTGGAGAAT CATTATCAACCATCGAGTTCCATCGGGAGGCCCTGGAGAAT < 41bp 0.745934674854953 0.397711895785086 0.42268556 0.082948714 prediction 0.491869349709906 Functional Loss - CHMP4B ENSG00000101421 CDS Human protein_coding chr20:32436356 chr20:32436358 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_66749 0 0 1 0 2 CHMP4B chr20:32436450 5'GT 32436450 Upstream 93bp
chr6 7590554 7590554 1 + G C LUSC 7590553 + 7590533 7590573 41 CAGGAGGAGCTGAACGAGTTCGTGGAGAGCGGCTGCCGGAC CAGGAGGAGCTGAACGAGTTCCTGGAGAGCGGCTGCCGGAC < 41bp 0.745934526152019 0.469303478329942 0.8727634 0.5771725 prediction 0.491869052304039 Functional Loss - SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7590553 chr6:7590554 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_66750 0 0 1 0 1 SNRNP48 chr6:7590646 5'GT 7590646 Upstream 93bp
chr9 89763778 89763778 1 + G A LUAD 89763775 + 89763755 89763795 41 CAAGGCCCGGGCGGGGAGGCCTGGCCTCCTGCTCAGTCGGT CAAGGCCCGGGCGGGGAGGCCTGACCTCCTGCTCAGTCGGT < 41bp 0.745934367850105 0.49671190725634 0.8186941 0.58493596 prediction 0.491868735700211 Functional Loss - C9orf170 ENSG00000204446 CDS Human lincRNA chr9:89763775 chr9:89763778 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_66751 0 0 0 0 1 C9orf170 chr9:89763813 5'GT 89763813 Upstream 36bp
chr3 12209921 12209921 1 + G T LUAD 12209919 + 12209899 12209939 41 GCTCTGAGATGTTTGGCGGCCTGGACATCTGTGCTGTCAAA GCTCTGAGATGTTTGGCGGCCTTGACATCTGTGCTGTCAAA < 41bp 0.745933588189199 0.421530196497724 0.20227474 0.13068289 prediction 0.491867176378399 Functional Loss - SYN2 ENSG00000157152 ncRNA_exonic Human protein_coding chr3:12209919 chr3:12209921 . . 0 23 hm5C_associated_SNPs_66752 0 0 0 0 2 SYN2 chr3:12209876 3'AG 12209876 Downstream 46bp
chr3 12209921 12209921 1 + G T LUAD 12209919 + 12209899 12209939 41 GCTCTGAGATGTTTGGCGGCCTGGACATCTGTGCTGTCAAA GCTCTGAGATGTTTGGCGGCCTTGACATCTGTGCTGTCAAA < 41bp 0.745933588189199 0.421530196497724 0.20227474 0.13068289 prediction 0.491867176378399 Functional Loss - SYN2 ENSG00000157152 ncRNA_exonic Human protein_coding chr3:12209919 chr3:12209921 . . 0 23 hm5C_associated_SNPs_66752 0 0 0 0 2 SYN2 chr3:12209978 5'GT 12209978 Upstream 58bp
chr1 210637944 210637944 1 + C T SKCM 210637942 + 210637922 210637962 41 CATGCGCCTGGATGGACTCACTCCACCCGCCCTCCCCCGCT CATGCGCCTGGATGGACTCACTTCACCCGCCCTCCCCCGCT < 41bp 0.817503590884851 0.571590181575238 0.95267665 0.14834541 prediction 0.491826818619227 Functional Loss - HHAT ENSG00000054392 CDS Human protein_coding chr1:210637942 chr1:210637944 nonsynonymous SNV 0.042 4 23 hm5C_associated_SNPs_66755 0 0 0 0 2 HHAT chr1:210637849 3'AG 210637849 Downstream 96bp
chr1 210637944 210637944 1 + C T SKCM 210637942 + 210637922 210637962 41 CATGCGCCTGGATGGACTCACTCCACCCGCCCTCCCCCGCT CATGCGCCTGGATGGACTCACTTCACCCGCCCTCCCCCGCT < 41bp 0.817503590884851 0.571590181575238 0.95267665 0.14834541 prediction 0.491826818619227 Functional Loss - HHAT ENSG00000054392 CDS Human protein_coding chr1:210637942 chr1:210637944 nonsynonymous SNV 0.042 4 23 hm5C_associated_SNPs_66755 0 0 0 0 2 HHAT chr1:210637999 5'GT 210637999 Upstream 56bp
chr19 39964988 39964988 1 + G T GBM 39964985 + 39964965 39965005 41 GCGCCAAGCCCAGCAGGCTACCAGAATACCCACTCCCCAGC GCGCCAAGCCCAGCAGGCTACCATAATACCCACTCCCCAGC < 41bp 0.745896206817202 0.366803458313647 0.2658323 0.051600188 prediction 0.491792413634403 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39964985 chr19:39964988 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_66760 0 0 1 0 1 SUPT5H chr19:39965042 5'GT 39965042 Upstream 55bp
chr7 130021652 130021652 1 + G A READ 130021649 + 130021629 130021669 41 GCAGATGTTCGCCTTCCGGTCCCGGGCGCGCTCCACCGACA GCAGATGTTCGCCTTCCGGTCCCAGGCGCGCTCCACCGACA < 41bp 0.745891212070326 0.486949398114898 0.2888087 0.12051824 prediction 0.491782424140652 Functional Loss - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021649 chr7:130021652 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_66761 0 0 0 0 1 CPA1 chr7:130021704 5'GT 130021704 Upstream 53bp
chr17 15641636 15641636 1 + G T LUSC 15641633 + 15641613 15641653 41 AAGTCATTCCCCTGGCGGTACGGGGCCGGGCGTGGTCACTT AAGTCATTCCCCTGGCGGTACGGTGCCGGGCGTGGTCACTT < 41bp 0.745885807613 0.331488747337347 0.4022413 0.1883061 prediction 0.491771615226 Functional Loss - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15641633 chr17:15641636 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_66762 0 0 0 0 2 TBC1D26 chr17:15641594 3'AG 15641594 Downstream 43bp
chr17 15641636 15641636 1 + G T LUSC 15641633 + 15641613 15641653 41 AAGTCATTCCCCTGGCGGTACGGGGCCGGGCGTGGTCACTT AAGTCATTCCCCTGGCGGTACGGTGCCGGGCGTGGTCACTT < 41bp 0.745885807613 0.331488747337347 0.4022413 0.1883061 prediction 0.491771615226 Functional Loss - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15641633 chr17:15641636 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_66762 0 0 0 0 2 TBC1D26 chr17:15641701 5'GT 15641701 Upstream 66bp
chr17 38130548 38130548 1 + G T BLCA 38130545 + 38130525 38130565 41 GGGGACGTACACGAAGGCTTCAGGACACTAAAAGAAGAAGT GGGGACGTACACGAAGGCTTCAGTACACTAAAAGAAGAAGT < 41bp 0.745883551780445 0.348953313214117 0.31625158 0.10300493 prediction 0.491767103560889 Functional Loss - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38130545 chr17:38130548 nonsynonymous SNV 0.409 1 24 hm5C_associated_SNPs_66763 0 0 0 0 1 GSDMA chr17:38130526 3'AG 38130526 Downstream 23bp
chr19 50964951 50964951 1 + C T BLCA 50964949 + 50964929 50964969 41 CCAAGAACACGGCCCGCATCCTCAAGACAGGTACAGCCATC CCAAGAACACGGCCCGCATCCTTAAGACAGGTACAGCCATC < 41bp 0.813229093462955 0.56735091031261 0.15054497 0.10059032 prediction 0.49175636630069 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50964949 chr19:50964951 synonymous SNV . 0 23 hm5C_associated_SNPs_66764 0 0 0 0 1 MYBPC2 chr19:50964958 5'GT 50964958 Upstream 8bp
chr20 35509121 35509121 1 + A T LUSC 35509117 + 35509097 35509137 41 AAAGGCTTCTATGGTACTGGCGAGACATTCCTCTTCTCCTT AAAGGCTTCTATGGTACTGGCGAGTCATTCCTCTTCTCCTT < 41bp 0.873245443865411 0.627370398925272 0.5094995 0.20110258 prediction 0.491750089880279 Functional Loss - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35509117 chr20:35509121 nonsynonymous SNV 0.969 1 25 hm5C_associated_SNPs_66765 0 0 0 0 2 TLDC2 chr20:35509058 3'AG 35509058 Downstream 64bp
chr20 35509121 35509121 1 + A T LUSC 35509117 + 35509097 35509137 41 AAAGGCTTCTATGGTACTGGCGAGACATTCCTCTTCTCCTT AAAGGCTTCTATGGTACTGGCGAGTCATTCCTCTTCTCCTT < 41bp 0.873245443865411 0.627370398925272 0.5094995 0.20110258 prediction 0.491750089880279 Functional Loss - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35509117 chr20:35509121 nonsynonymous SNV 0.969 1 25 hm5C_associated_SNPs_66765 0 0 0 0 2 TLDC2 chr20:35509153 5'GT 35509153 Upstream 33bp
chr11 64083221 64083221 1 + G C THCA 64083217 + 64083197 64083237 41 ATGCCGAGGCTGTGGAGCAGCTGCGAGAAGCTCTGCACGAG ATGCCGAGGCTGTGGAGCAGCTGCCAGAAGCTCTGCACGAG < 41bp 0.828337721045511 0.582464922135734 0.653852 0.25941017 prediction 0.491745597819555 Functional Loss - ESRRA ENSG00000173153 CDS Human protein_coding chr11:64083217 chr11:64083221 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_66768 0 0 1 0 1 ESRRA chr11:64083179 3'AG 64083179 Downstream 43bp
chr6 43029313 43029313 1 + C T UCEC 43029311 + 43029291 43029331 41 GTTCTATGGAAAACATTGAGCTCGGGCTGAGTGAGGCCCAG GTTCTATGGAAAACATTGAGCTTGGGCTGAGTGAGGCCCAG < 41bp 0.759151545459835 0.51328048698185 0.15812838 0.12979141 prediction 0.491742116955969 Functional Loss - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43029311 chr6:43029313 synonymous SNV . 0 23 hm5C_associated_SNPs_66769 0 0 1 0 1 KLC4 chr6:43029331 5'GT 43029331 Upstream 19bp
chr20 35173452 35173452 1 + C T LGG 35173450 + 35173430 35173470 41 TCATTGACAAGGAGGACCTGCACGACATGCTGGCCTCGCTG TCATTGACAAGGAGGACCTGCATGACATGCTGGCCTCGCTG < 41bp 0.804000534990537 0.558130525899927 0.10180673 0.11819339 prediction 0.491740018181221 Functional Loss - MYL9 ENSG00000101335 CDS Human protein_coding chr20:35173450 chr20:35173452 synonymous SNV . 0 23 hm5C_associated_SNPs_66771 0 0 0 0 1 MYL9 chr20:35173471 5'GT 35173471 Upstream 20bp
chr16 28507303 28507303 1 + C T SKCM 28507301 + 28507281 28507321 41 GGGGAGGAGGCTGAGACAGCCTCAGGCGGGGAGGAGGCTGA GGGGAGGAGGCTGAGACAGCCTTAGGCGGGGAGGAGGCTGA < 41bp 0.761549507869741 0.515681580415497 0.16339627 0.27115372 prediction 0.491735854908487 Functional Loss - APOBR ENSG00000184730 CDS Human protein_coding chr16:28507301 chr16:28507303 nonsynonymous SNV 0.014 1 23 hm5C_associated_SNPs_66772 0 0 1 0 1 APOBR chr16:28507236 3'AG 28507236 Downstream 68bp
chr17 7157978 7157978 1 + G A UCEC 7157975 + 7157955 7157995 41 AGGCCTTTCCTGGGGGGCCGCTGGGAGCCTTGAGAGCCATG AGGCCTTTCCTGGGGGGCCGCTGAGAGCCTTGAGAGCCATG < 41bp 0.751884287185714 0.506017682433461 0.7896057 0.7742389 prediction 0.491733209504506 Functional Loss - ELP5 ENSG00000170291 CDS Human protein_coding chr17:7157975 chr17:7157978 nonsynonymous SNV 0.659 1 24 hm5C_associated_SNPs_66773 0 0 1 0 1 ELP5 chr17:7157902 3'AG 7157902 Downstream 77bp
chr5 139216555 139216555 1 + G T UCEC 139216553 + 139216533 139216573 41 ACAAGCACGGCGTCCTGACCCGGAAGACTCACGCTGACATG ACAAGCACGGCGTCCTGACCCGTAAGACTCACGCTGACATG < 41bp 0.891912309216615 0.646060497935354 0.8890484 0.3705616 prediction 0.491703622562522 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139216553 chr5:139216555 synonymous SNV . 0 23 hm5C_associated_SNPs_66779 0 0 0 0 1 PSD2 chr5:139216586 5'GT 139216586 Upstream 32bp
chr1 6635392 6635392 1 + C T SKCM 6635390 + 6635370 6635410 41 TGTATGCGGTGGCCCATGGCCTCCACCAGCTCCTGGGCTGT TGTATGCGGTGGCCCATGGCCTTCACCAGCTCCTGGGCTGT < 41bp 0.745845006672646 0.464748023697832 0.9420166 0.18726218 prediction 0.491690013345292 Functional Loss - TAS1R1 ENSG00000173662 CDS Human protein_coding chr1:6635390 chr1:6635392 synonymous SNV . 0 23 hm5C_associated_SNPs_66781 0 0 0 0 1 TAS1R1 chr1:6635452 5'GT 6635452 Upstream 61bp
chr15 78390855 78390855 1 + C T SKCM 78390853 + 78390833 78390873 41 GGCCGCCAGCCCCCGCTCTTCTCCAAAGCCCCAGGTCTCCT GGCCGCCAGCCCCCGCTCTTCTTCAAAGCCCCAGGTCTCCT < 41bp 0.826146222654244 0.580304847660496 0.9817288 0.87864006 prediction 0.491682749987496 Functional Loss - SH2D7 ENSG00000183476 CDS Human protein_coding chr15:78390853 chr15:78390855 nonsynonymous SNV 0.170 0 23 hm5C_associated_SNPs_66784 0 0 0 0 1 SH2D7 chr15:78390938 5'GT 78390938 Upstream 84bp
chr2 101587484 101587484 1 + A C UCEC 101587480 + 101587460 101587500 41 ATGTCCGGGTGGAAAGGAGGCAGGAGCTGGCTCTGGAAGAC ATGTCCGGGTGGAAAGGAGGCAGGCGCTGGCTCTGGAAGAC < 41bp 0.921999004386435 0.676161042870621 0.8850415 0.81776875 prediction 0.491675923031629 Functional Loss - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101587480 chr2:101587484 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_66785 0 0 1 0 2 NPAS2 chr2:101587452 3'AG 101587452 Downstream 33bp
chr2 101587484 101587484 1 + A C UCEC 101587480 + 101587460 101587500 41 ATGTCCGGGTGGAAAGGAGGCAGGAGCTGGCTCTGGAAGAC ATGTCCGGGTGGAAAGGAGGCAGGCGCTGGCTCTGGAAGAC < 41bp 0.921999004386435 0.676161042870621 0.8850415 0.81776875 prediction 0.491675923031629 Functional Loss - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101587480 chr2:101587484 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_66785 0 0 1 0 2 NPAS2 chr2:101587536 5'GT 101587536 Upstream 53bp
chr8 80577088 80577088 1 + C T LUAD 80577086 + 80577066 80577106 41 AGGTGCGCAGGAACAAGGAACTCCAGGTTGAACTGTCTGGC AGGTGCGCAGGAACAAGGAACTTCAGGTTGAACTGTCTGGC < 41bp 0.745830308026387 0.465122125878619 0.37796456 0.24389395 prediction 0.491660616052775 Functional Loss - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80577086 chr8:80577088 synonymous SNV . 0 23 hm5C_associated_SNPs_66788 0 0 0 3 1 STMN2 chr8:80577050 3'AG 80577050 Downstream 39bp
chr19 6750388 6750388 1 + C T ESCA 6750386 + 6750366 6750406 41 GCCCGGCCTCCCGACCCCCCCGCTAGCGCCCCGCCAGACAG GCCCGGCCTCCCGACCCCCCCGTTAGCGCCCCGCCAGACAG < 41bp 0.796916882238335 0.551089814470973 0.20884046 0.10568109 prediction 0.491654135534724 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6750386 chr19:6750388 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_66789 0 0 1 0 2 TRIP10 chr19:6750303 3'AG 6750303 Downstream 86bp
chr19 6750388 6750388 1 + C T ESCA 6750386 + 6750366 6750406 41 GCCCGGCCTCCCGACCCCCCCGCTAGCGCCCCGCCAGACAG GCCCGGCCTCCCGACCCCCCCGTTAGCGCCCCGCCAGACAG < 41bp 0.796916882238335 0.551089814470973 0.20884046 0.10568109 prediction 0.491654135534724 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6750386 chr19:6750388 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_66789 0 0 1 0 2 TRIP10 chr19:6750442 5'GT 6750442 Upstream 55bp
chr5 162909750 162909750 1 + G T COAD 162909748 + 162909728 162909768 41 GGAAAAATGCAGAGGATGTTCAGCATCAGATTTTGGCAACT GGAAAAATGCAGAGGATGTTCATCATCAGATTTTGGCAACT < 41bp 0.868966591921027 0.623151598830894 0.16305971 0.07517186 prediction 0.491629986180265 Functional Loss - HMMR ENSG00000072571 CDS Human protein_coding chr5:162909748 chr5:162909750 nonsynonymous SNV 0.033 0 23 hm5C_associated_SNPs_66791 0 0 1 0 1 HMMR chr5:162909794 5'GT 162909794 Upstream 45bp
chr9 75407238 75407238 1 + A T LUSC 75407234 + 75407214 75407254 41 TGTTCACCCTGCAGATGTACCTCGAGGACCTTGCTGGGAAA TGTTCACCCTGCAGATGTACCTCGTGGACCTTGCTGGGAAA < 41bp 0.881997224235866 0.636200687364268 0.15265611 0.037301153 prediction 0.491593073743196 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75407234 chr9:75407238 synonymous SNV . 0 25 hm5C_associated_SNPs_66792 0 0 0 0 1 TMC1 chr9:75407268 5'GT 75407268 Upstream 31bp
chr1 186280656 186280656 1 + G T LUAD 186280654 + 186280634 186280674 41 CAAAGGATTTGGAGGACTAACTGGACAAATAGTGGCAGCGC CAAAGGATTTGGAGGACTAACTTGACAAATAGTGGCAGCGC < 41bp 0.875088977527744 0.629296323116414 0.44908655 0.23574767 prediction 0.491585308822659 Functional Loss - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186280654 chr1:186280656 stopgain 0.979 1 23 hm5C_associated_SNPs_66793 0 0 0 1 2 PRG4 chr1:186280572 3'AG 186280572 Downstream 85bp
chr1 186280656 186280656 1 + G T LUAD 186280654 + 186280634 186280674 41 CAAAGGATTTGGAGGACTAACTGGACAAATAGTGGCAGCGC CAAAGGATTTGGAGGACTAACTTGACAAATAGTGGCAGCGC < 41bp 0.875088977527744 0.629296323116414 0.44908655 0.23574767 prediction 0.491585308822659 Functional Loss - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186280654 chr1:186280656 stopgain 0.979 1 23 hm5C_associated_SNPs_66793 0 0 0 1 2 PRG4 chr1:186280728 5'GT 186280728 Upstream 73bp
chr1 159777981 159777981 1 + C T SKCM 159777979 + 159777959 159777999 41 GTCTCGCAGTCTGGCTGTACCTCCAAGCCTGGCCAAACCCT GTCTCGCAGTCTGGCTGTACCTTCAAGCCTGGCCAAACCCT < 41bp 0.82584005070048 0.580048219109973 0.97187746 0.20312217 prediction 0.491583663181014 Functional Loss - FCRL6 ENSG00000181036 CDS Human protein_coding chr1:159777979 chr1:159777981 synonymous SNV . 0 23 hm5C_associated_SNPs_66794 0 0 0 0 1 FCRL6 chr1:159777968 3'AG 159777968 Downstream 14bp
chr17 8170704 8170704 1 + C T GBM 8170702 + 8170682 8170722 41 CCCCCAAGGTGGTCCCAGCCCCCGAGTCGCCATCTTGCGAG CCCCCAAGGTGGTCCCAGCCCCTGAGTCGCCATCTTGCGAG < 41bp 0.818962356786096 0.573174074979748 0.08502355 0.097507685 prediction 0.491576563612696 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8170702 chr17:8170704 stopgain 0.950 1 23 hm5C_associated_SNPs_66795 0 0 1 0 2 PFAS chr17:8170690 3'AG 8170690 Downstream 15bp
chr17 8170704 8170704 1 + C T GBM 8170702 + 8170682 8170722 41 CCCCCAAGGTGGTCCCAGCCCCCGAGTCGCCATCTTGCGAG CCCCCAAGGTGGTCCCAGCCCCTGAGTCGCCATCTTGCGAG < 41bp 0.818962356786096 0.573174074979748 0.08502355 0.097507685 prediction 0.491576563612696 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8170702 chr17:8170704 stopgain 0.950 1 23 hm5C_associated_SNPs_66795 0 0 1 0 2 PFAS chr17:8170781 5'GT 8170781 Upstream 78bp
chr19 11559988 11559988 1 + A C BLCA 11559984 + 11559964 11560004 41 TGGCAGGGCCCCAACCGCTCCACCACCGTGAGTGCCTGCAA TGGCAGGGCCCCAACCGCTCCACCCCCGTGAGTGCCTGCAA < 41bp 0.745784075050056 0.316990290717588 0.1010125 0.034798622 prediction 0.491568150100112 Functional Loss - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11559984 chr19:11559988 nonsynonymous SNV 0.988 2 25 hm5C_associated_SNPs_66797 0 0 1 0 2 PRKCSH chr19:11559891 3'AG 11559891 Downstream 98bp
chr19 11559988 11559988 1 + A C BLCA 11559984 + 11559964 11560004 41 TGGCAGGGCCCCAACCGCTCCACCACCGTGAGTGCCTGCAA TGGCAGGGCCCCAACCGCTCCACCCCCGTGAGTGCCTGCAA < 41bp 0.745784075050056 0.316990290717588 0.1010125 0.034798622 prediction 0.491568150100112 Functional Loss - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11559984 chr19:11559988 nonsynonymous SNV 0.988 2 25 hm5C_associated_SNPs_66797 0 0 1 0 2 PRKCSH chr19:11559990 5'GT 11559990 Upstream 3bp
chr19 56552314 56552314 1 + C T KIRC 56552312 + 56552292 56552332 41 GAGGACTGTGGCATCACAGCCACGGGTTGCCAGAGTCTGGC GAGGACTGTGGCATCACAGCCATGGGTTGCCAGAGTCTGGC < 41bp 0.745773317624107 0.486344717989145 0.49532992 0.7674682 prediction 0.491546635248214 Functional Loss - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56552312 chr19:56552314 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_66802 0 0 0 0 1 NLRP5 chr19:56552288 3'AG 56552288 Downstream 27bp
chr11 124487306 124487306 1 + C T UCEC 124487304 + 124487284 124487324 41 CTGGACAAATCTTATAATCGCTCCATCCGCCTCGTGCAGCA CTGGACAAATCTTATAATCGCTTCATCCGCCTCGTGCAGCA < 41bp 0.846261187397998 0.600495945427685 0.9065168 0.11492306 prediction 0.491530483940627 Functional Loss - PANX3 ENSG00000154143 CDS Human protein_coding chr11:124487304 chr11:124487306 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_66804 0 0 0 0 1 PANX3 chr11:124487384 5'GT 124487384 Upstream 79bp
chr12 72265927 72265927 1 + A T LUSC 72265923 + 72265903 72265943 41 TGACCAAGACGGCTTGATTTCAGGAATATTACGTGTTTTAG TGACCAAGACGGCTTGATTTCAGGTATATTACGTGTTTTAG < 41bp 0.859865727810389 0.614110786937639 0.89686257 0.8825221 prediction 0.491509881745501 Functional Loss - TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72265923 chr12:72265927 synonymous SNV . 0 25 hm5C_associated_SNPs_66806 0 0 1 0 2 TBC1D15 chr12:72265850 3'AG 72265850 Downstream 78bp
chr12 72265927 72265927 1 + A T LUSC 72265923 + 72265903 72265943 41 TGACCAAGACGGCTTGATTTCAGGAATATTACGTGTTTTAG TGACCAAGACGGCTTGATTTCAGGTATATTACGTGTTTTAG < 41bp 0.859865727810389 0.614110786937639 0.89686257 0.8825221 prediction 0.491509881745501 Functional Loss - TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72265923 chr12:72265927 synonymous SNV . 0 25 hm5C_associated_SNPs_66806 0 0 1 0 2 TBC1D15 chr12:72265948 5'GT 72265948 Upstream 22bp
chr10 71008243 71008243 1 + C T SKCM 71008241 + 71008221 71008261 41 CAAGCTGTGATGTCCGCTTCCTCCTGTCAGAGAGTGGCAGC CAAGCTGTGATGTCCGCTTCCTTCTGTCAGAGAGTGGCAGC < 41bp 0.745753300693464 0.453122789132849 0.09204888 0.09060028 prediction 0.491506601386929 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71008241 chr10:71008243 synonymous SNV . 0 23 hm5C_associated_SNPs_66807 0 0 0 0 1 HKDC1 chr10:71008180 3'AG 71008180 Downstream 64bp
chr11 9496156 9496156 1 + G T UCEC 9496154 + 9496134 9496174 41 ACAGTTAGAAGATGGTACCACAGCATTTATTCACCACACCT ACAGTTAGAAGATGGTACCACATCATTTATTCACCACACCT < 41bp 0.745749097352865 0.418941726635254 0.17324096 0.13906676 prediction 0.49149819470573 Functional Loss - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9496154 chr11:9496156 nonsynonymous SNV 0.981 4 23 hm5C_associated_SNPs_66809 0 0 1 0 3 ZNF143 chr11:9496097 3'AG 9496097 Downstream 60bp
chr11 9496156 9496156 1 + G T UCEC 9496154 + 9496134 9496174 41 ACAGTTAGAAGATGGTACCACAGCATTTATTCACCACACCT ACAGTTAGAAGATGGTACCACATCATTTATTCACCACACCT < 41bp 0.745749097352865 0.418941726635254 0.17324096 0.13906676 prediction 0.49149819470573 Functional Loss - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9496154 chr11:9496156 nonsynonymous SNV 0.981 4 23 hm5C_associated_SNPs_66809 0 0 1 0 3 ZNF143 chr11:9496100 3'AG 9496100 Downstream 57bp
chr11 9496156 9496156 1 + G T UCEC 9496154 + 9496134 9496174 41 ACAGTTAGAAGATGGTACCACAGCATTTATTCACCACACCT ACAGTTAGAAGATGGTACCACATCATTTATTCACCACACCT < 41bp 0.745749097352865 0.418941726635254 0.17324096 0.13906676 prediction 0.49149819470573 Functional Loss - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9496154 chr11:9496156 nonsynonymous SNV 0.981 4 23 hm5C_associated_SNPs_66809 0 0 1 0 3 ZNF143 chr11:9496180 5'GT 9496180 Upstream 25bp
chr3 183958829 183958829 1 + G T UCEC 183958827 + 183958807 183958847 41 TGCAGAGCCCGCTGAGCCCCCAGGAACCCCTCCTGCCTCTC TGCAGAGCCCGCTGAGCCCCCATGAACCCCTCCTGCCTCTC < 41bp 0.745743737970726 0.393575081046254 0.9072019 0.13879317 prediction 0.491487475941452 Functional Loss - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183958827 chr3:183958829 stopgain 0.016 0 23 hm5C_associated_SNPs_66811 0 0 0 0 2 VWA5B2 chr3:183958812 3'AG 183958812 Downstream 18bp
chr3 183958829 183958829 1 + G T UCEC 183958827 + 183958807 183958847 41 TGCAGAGCCCGCTGAGCCCCCAGGAACCCCTCCTGCCTCTC TGCAGAGCCCGCTGAGCCCCCATGAACCCCTCCTGCCTCTC < 41bp 0.745743737970726 0.393575081046254 0.9072019 0.13879317 prediction 0.491487475941452 Functional Loss - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183958827 chr3:183958829 stopgain 0.016 0 23 hm5C_associated_SNPs_66811 0 0 0 0 2 VWA5B2 chr3:183958895 5'GT 183958895 Upstream 67bp
chr15 102294618 102294618 1 + G T UCEC 102294616 + 102294596 102294636 41 AGGAGTCGGCAGAGCAGGCACAGCGGTGCGACGAGATGCTG AGGAGTCGGCAGAGCAGGCACATCGGTGCGACGAGATGCTG < 41bp 0.745734221588044 0.410361533818416 0.7253661 0.4320793 prediction 0.491468443176087 Functional Loss - LOC100128108;OR4F6 ENSG00000259660 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102294616 chr15:102294618 . . 0 23 hm5C_associated_SNPs_66813 0 0 0 0 1 LOC100128108;OR4F6 chr15:102294598 3'AG 102294598 Downstream 21bp
chr13 106118652 106118652 1 + G T LUAD 106118650 + 106118630 106118670 41 GACCCAAAATGCTGGAAAAGCTGATGGGTGCTGATTCTCTC GACCCAAAATGCTGGAAAAGCTTATGGGTGCTGATTCTCTC < 41bp 0.745715244754045 0.413131971979253 0.25314945 0.16733968 prediction 0.49143048950809 Functional Loss - DAOA ENSG00000182346 CDS Human protein_coding chr13:106118650 chr13:106118652 synonymous SNV . 0 23 hm5C_associated_SNPs_66820 0 0 0 0 1 DAOA chr13:106118681 5'GT 106118681 Upstream 30bp
chr7 150741245 150741245 1 + C T SKCM 150741243 + 150741223 150741263 41 GCACGGTGCTGGTAATTGCCCACCGGCTCAGCACTGTCCGT GCACGGTGCTGGTAATTGCCCATCGGCTCAGCACTGTCCGT < 41bp 0.745714866852897 0.493765051678616 0.039159954 0.06320357 prediction 0.491429733705794 Functional Loss - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150741243 chr7:150741245 synonymous SNV . 0 23 hm5C_associated_SNPs_66821 0 0 1 0 1 ABCB8 chr7:150741308 5'GT 150741308 Upstream 64bp
chr11 66262739 66262739 1 + G T UCEC 66262737 + 66262717 66262757 41 TCAACCCAGAGACGGGCGAGCAGGTGAGGGAGGCCTCAGCA TCAACCCAGAGACGGGCGAGCATGTGAGGGAGGCCTCAGCA < 41bp 0.745710730828472 0.382217546601755 0.91412956 0.7712829 prediction 0.491421461656944 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66262737 chr11:66262739 nonsynonymous SNV 0.973 0 23 hm5C_associated_SNPs_66823 0 0 1 0 2 DPP3 chr11:66262677 3'AG 66262677 Downstream 63bp
chr11 66262739 66262739 1 + G T UCEC 66262737 + 66262717 66262757 41 TCAACCCAGAGACGGGCGAGCAGGTGAGGGAGGCCTCAGCA TCAACCCAGAGACGGGCGAGCATGTGAGGGAGGCCTCAGCA < 41bp 0.745710730828472 0.382217546601755 0.91412956 0.7712829 prediction 0.491421461656944 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66262737 chr11:66262739 nonsynonymous SNV 0.973 0 23 hm5C_associated_SNPs_66823 0 0 1 0 2 DPP3 chr11:66262739 5'GT 66262739 Upstream 1bp
chr7 128483327 128483327 1 + C T COAD 128483325 + 128483305 128483345 41 ACATCAAGGTGGACCCATCCCACGATGCCAGCAAAGTCAAG ACATCAAGGTGGACCCATCCCATGATGCCAGCAAAGTCAAG < 41bp 0.745706406369402 0.48440218503836 0.065157294 0.10780311 prediction 0.491412812738804 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128483325 chr7:128483327 synonymous SNV . 0 23 hm5C_associated_SNPs_66825 0 0 0 0 2 FLNC chr7:128483283 3'AG 128483283 Downstream 45bp
chr7 128483327 128483327 1 + C T COAD 128483325 + 128483305 128483345 41 ACATCAAGGTGGACCCATCCCACGATGCCAGCAAAGTCAAG ACATCAAGGTGGACCCATCCCATGATGCCAGCAAAGTCAAG < 41bp 0.745706406369402 0.48440218503836 0.065157294 0.10780311 prediction 0.491412812738804 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128483325 chr7:128483327 synonymous SNV . 0 23 hm5C_associated_SNPs_66825 0 0 0 0 2 FLNC chr7:128483373 5'GT 128483373 Upstream 47bp
chr17 64880703 64880703 1 + G T UCEC 64880700 + 64880680 64880720 41 GATGAGATGCTCAACAGGACCAAGGATGCAGAGACCTACTT GATGAGATGCTCAACAGGACCAATGATGCAGAGACCTACTT < 41bp 0.745696793230282 0.346169927881633 0.19818875 0.05391684 prediction 0.491393586460564 Functional Loss - CACNG5 ENSG00000075429 CDS Human protein_coding chr17:64880700 chr17:64880703 nonsynonymous SNV 0.989 2 24 hm5C_associated_SNPs_66827 0 0 0 0 1 CACNG5 chr17:64880778 5'GT 64880778 Upstream 76bp
chr9 136301992 136301992 1 + C T UCEC 136301990 + 136301970 136302010 41 GAGTTCATGTCGCAACAGTGCGCCAGGACCGACGGCCAGCC GAGTTCATGTCGCAACAGTGCGTCAGGACCGACGGCCAGCC < 41bp 0.771599792240583 0.525905806381419 0.7176569 0.317745 prediction 0.491387971718328 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136301990 chr9:136301992 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_66829 0 0 0 0 2 ADAMTS13 chr9:136301949 3'AG 136301949 Downstream 44bp
chr9 136301992 136301992 1 + C T UCEC 136301990 + 136301970 136302010 41 GAGTTCATGTCGCAACAGTGCGCCAGGACCGACGGCCAGCC GAGTTCATGTCGCAACAGTGCGTCAGGACCGACGGCCAGCC < 41bp 0.771599792240583 0.525905806381419 0.7176569 0.317745 prediction 0.491387971718328 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136301990 chr9:136301992 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_66829 0 0 0 0 2 ADAMTS13 chr9:136302075 5'GT 136302075 Upstream 84bp
chr11 60777067 60777067 1 + G T UCEC 60777065 + 60777045 60777085 41 GCACCAGTCCTGGCGCCTGACAGGGGGCGCTGACCGCTGCG GCACCAGTCCTGGCGCCTGACATGGGGCGCTGACCGCTGCG < 41bp 0.898746070004714 0.653054405563597 0.91569114 0.41356784 prediction 0.491383328882235 Functional Loss - CD6 ENSG00000013725 CDS Human protein_coding chr11:60777065 chr11:60777067 nonsynonymous SNV 0.211 4 23 hm5C_associated_SNPs_66832 0 0 0 0 1 CD6 chr11:60777044 3'AG 60777044 Downstream 24bp
chrX 55777611 55777611 1 + G T LUAD 55777608 + 55777588 55777628 41 TCTTGTTTCCGAACATCTATCTGGGATGAAACCCTCTATAA TCTTGTTTCCGAACATCTATCTGTGATGAAACCCTCTATAA < 41bp 0.916306151555 0.67061956047011 0.8925605 0.10573456 prediction 0.491373182169782 Functional Loss - RRAGB ENSG00000083750 CDS Human protein_coding chrX:55777608 chrX:55777611 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_66833 0 0 1 0 2 RRAGB chrX:55777534 3'AG 55777534 Downstream 78bp
chrX 55777611 55777611 1 + G T LUAD 55777608 + 55777588 55777628 41 TCTTGTTTCCGAACATCTATCTGGGATGAAACCCTCTATAA TCTTGTTTCCGAACATCTATCTGTGATGAAACCCTCTATAA < 41bp 0.916306151555 0.67061956047011 0.8925605 0.10573456 prediction 0.491373182169782 Functional Loss - RRAGB ENSG00000083750 CDS Human protein_coding chrX:55777608 chrX:55777611 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_66833 0 0 1 0 2 RRAGB chrX:55777629 5'GT 55777629 Upstream 19bp
chr5 60831405 60831405 1 + C T rs193297656 60831403 + 60831383 60831423 41 TCTTCACCTCTCTCCTACCTCACGATGCTGAATTGGCATAC TCTTCACCTCTCTCCTACCTCATGATGCTGAATTGGCATAC < 41bp 0.831009089107252 0.585323119143465 0.24840474 0.16412812 prediction 0.491371939927575 Functional Loss - ZSWIM6 ENSG00000130449 CDS Human protein_coding chr5:60831403 chr5:60831405 synonymous SNV . 0 23 hm5C_associated_SNPs_66834 0 0 1 0 2 ZSWIM6 chr5:60831311 3'AG 60831311 Downstream 95bp
chr5 60831405 60831405 1 + C T rs193297656 60831403 + 60831383 60831423 41 TCTTCACCTCTCTCCTACCTCACGATGCTGAATTGGCATAC TCTTCACCTCTCTCCTACCTCATGATGCTGAATTGGCATAC < 41bp 0.831009089107252 0.585323119143465 0.24840474 0.16412812 prediction 0.491371939927575 Functional Loss - ZSWIM6 ENSG00000130449 CDS Human protein_coding chr5:60831403 chr5:60831405 synonymous SNV . 0 23 hm5C_associated_SNPs_66834 0 0 1 0 2 ZSWIM6 chr5:60831446 5'GT 60831446 Upstream 42bp
chr19 46180314 46180314 1 + C T SKCM 46180312 + 46180292 46180332 41 ACCTGCACAGTCTCCTGGTGCTCGTGGGAGGCTCCGAGGAG ACCTGCACAGTCTCCTGGTGCTTGTGGGAGGCTCCGAGGAG < 41bp 0.778193324505654 0.532513632967677 0.18090767 0.15499258 prediction 0.491359383075953 Functional Loss - GIPR ENSG00000010310 CDS Human protein_coding chr19:46180312 chr19:46180314 synonymous SNV . 0 23 hm5C_associated_SNPs_66838 0 0 0 0 1 GIPR chr19:46180366 5'GT 46180366 Upstream 53bp
chr1 196648890 196648890 1 + G T LUSC 196648888 + 196648868 196648908 41 AAGAGGAGATGCTGTATGCACTGAATCTGGATGGCGTCCGT AAGAGGAGATGCTGTATGCACTTAATCTGGATGGCGTCCGT < 41bp 0.745676744864842 0.41871512105328 0.036332816 0.016193062 prediction 0.491353489729685 Functional Loss - CFH ENSG00000000971 CDS Human protein_coding chr1:196648888 chr1:196648890 stopgain 0.049 0 23 hm5C_associated_SNPs_66839 0 0 1 0 1 CFH chr1:196648923 5'GT 196648923 Upstream 34bp
chr9 137711997 137711997 1 - G A rs2228560 137711999 - 137711979 137712019 41 CGCCCTTCTCACCCTGTTCACCCGGAGGACCGATGAGCCCG CGCCCTTCTCACCCTGTTCACCTGGAGGACCGATGAGCCCG < 41bp 0.761137653791191 0.515464102143853 0.31094033 0.23634374 prediction 0.491347103294675 Functional Loss - COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137711999 chr9:137711997 synonymous SNV . 0 23 hm5C_associated_SNPs_66840 3 0 0 0 1 COL5A1 chr9:137712055 3'AG 137712055 Downstream 59bp
chr1 150478140 150478140 1 + G C LUSC 150478136 + 150478116 150478156 41 ACTCTGGACTGACCCTCAGCCGGAGAATCCGCCGGGCCCAG ACTCTGGACTGACCCTCAGCCGGACAATCCGCCGGGCCCAG < 41bp 0.82764481659468 0.581973225791655 0.8930142 0.54254866 prediction 0.49134318160605 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150478136 chr1:150478140 nonsynonymous SNV 0.972 4 25 hm5C_associated_SNPs_66841 0 0 0 0 2 TARS2 chr1:150478067 3'AG 150478067 Downstream 74bp
chr1 150478140 150478140 1 + G C LUSC 150478136 + 150478116 150478156 41 ACTCTGGACTGACCCTCAGCCGGAGAATCCGCCGGGCCCAG ACTCTGGACTGACCCTCAGCCGGACAATCCGCCGGGCCCAG < 41bp 0.82764481659468 0.581973225791655 0.8930142 0.54254866 prediction 0.49134318160605 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150478136 chr1:150478140 nonsynonymous SNV 0.972 4 25 hm5C_associated_SNPs_66841 0 0 0 0 2 TARS2 chr1:150478181 5'GT 150478181 Upstream 42bp
chr5 135207197 135207197 1 + G T LUAD 135207195 + 135207175 135207215 41 AGTGGCTCCTGCGGAGCAGCCAGCATACCAGGGGCCAGTGC AGTGGCTCCTGCGGAGCAGCCATCATACCAGGGGCCAGTGC < 41bp 0.889876002870946 0.644206330796855 0.91775763 0.47394 prediction 0.491339344148181 Functional Loss - SLC25A48 ENSG00000145832 CDS Human protein_coding chr5:135207195 chr5:135207197 nonsynonymous SNV 0.558 0 23 hm5C_associated_SNPs_66842 0 0 0 0 1 SLC25A48 chr5:135207150 3'AG 135207150 Downstream 48bp
chrX 14627147 14627147 1 + G T SARC 14627145 + 14627125 14627165 41 GCATTGAGGTCAAGTTTCATCTGGAACGCCAAATGGGATAT GCATTGAGGTCAAGTTTCATCTTGAACGCCAAATGGGATAT < 41bp 0.877388617679043 0.631719002894322 0.037663758 0.005625725 prediction 0.491339229569443 Functional Loss - GLRA2 ENSG00000101958 CDS Human protein_coding chrX:14627145 chrX:14627147 synonymous SNV . 0 23 hm5C_associated_SNPs_66843 0 0 0 0 1 GLRA2 chrX:14627113 3'AG 14627113 Downstream 35bp
chr10 115343999 115343999 1 + G T UCEC 115343997 + 115343977 115344017 41 GCCTGATGGGTCCTTTCCCTCTGGGAGTGAGTGCCACATCT GCCTGATGGGTCCTTTCCCTCTTGGAGTGAGTGCCACATCT < 41bp 0.892400269642635 0.646732774696942 0.84180975 0.30766538 prediction 0.491334989891386 Functional Loss - HABP2 ENSG00000148702 CDS Human protein_coding chr10:115343997 chr10:115343999 nonsynonymous SNV 0.982 5 23 hm5C_associated_SNPs_66844 0 0 0 0 1 HABP2 chr10:115343907 3'AG 115343907 Downstream 93bp
chr12 130834455 130834455 1 + G T UCEC 130834452 + 130834432 130834472 41 ATTGACTGGGACCAGAATCCCAAGAGCACCTTTAAGAAAGC ATTGACTGGGACCAGAATCCCAATAGCACCTTTAAGAAAGC < 41bp 0.745665555218765 0.356031112147822 0.39144635 0.14664596 prediction 0.49133111043753 Functional Loss - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130834452 chr12:130834455 nonsynonymous SNV 0.981 0 24 hm5C_associated_SNPs_66845 0 0 0 0 2 PIWIL1 chr12:130834401 3'AG 130834401 Downstream 55bp
chr12 130834455 130834455 1 + G T UCEC 130834452 + 130834432 130834472 41 ATTGACTGGGACCAGAATCCCAAGAGCACCTTTAAGAAAGC ATTGACTGGGACCAGAATCCCAATAGCACCTTTAAGAAAGC < 41bp 0.745665555218765 0.356031112147822 0.39144635 0.14664596 prediction 0.49133111043753 Functional Loss - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130834452 chr12:130834455 nonsynonymous SNV 0.981 0 24 hm5C_associated_SNPs_66845 0 0 0 0 2 PIWIL1 chr12:130834512 5'GT 130834512 Upstream 58bp
chr12 10464159 10464159 1 + A T ESCA 10464155 + 10464135 10464175 41 AGAAAACTTGGAACGAAAGTCGGCATCTCTGTGCTTCTCAG AGAAAACTTGGAACGAAAGTCGGCTTCTCTGTGCTTCTCAG < 41bp 0.868350507294181 0.622690008487196 0.82952404 0.80948675 prediction 0.491320997613969 Functional Loss - KLRD1 ENSG00000134539 CDS Human protein_coding chr12:10464155 chr12:10464159 nonsynonymous SNV 0.011 0 25 hm5C_associated_SNPs_66847 0 0 0 0 1 KLRD1 chr12:10464063 3'AG 10464063 Downstream 97bp
chr2 36740787 36740787 1 + C T rs78900278 36740785 + 36740765 36740805 41 ATAAAAATGAGGAGAGCTGGCACGATGGGTGCCGGGAATGC ATAAAAATGAGGAGAGCTGGCATGATGGGTGCCGGGAATGC < 41bp 0.825489646206613 0.579829204938514 0.25128767 0.3456905 prediction 0.491320882536199 Functional Loss - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36740785 chr2:36740787 synonymous SNV . 0 23 hm5C_associated_SNPs_66848 0 0 0 0 1 CRIM1 chr2:36740699 3'AG 36740699 Downstream 89bp
chr17 16285291 16285291 1 + G C CESC 16285290 + 16285270 16285310 41 GTGGAGCCCAGTGACACCATCGAAAATGTGAAGGCCAAGAT GTGGAGCCCAGTGACACCATCCAAAATGTGAAGGCCAAGAT < 41bp 0.864432889775316 0.618777666702483 0.350178 0.15938324 prediction 0.491310446145666 Functional Loss - UBB ENSG00000170315 CDS Human protein_coding chr17:16285290 chr17:16285291 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_66850 0 0 1 0 1 UBB chr17:16285216 3'AG 16285216 Downstream 76bp
chr16 57155644 57155644 1 + C T UCEC 57155642 + 57155622 57155662 41 AAGAAGAAGAACTATAAAAACTCGGGCATCATCATCCTGCG AAGAAGAAGAACTATAAAAACTTGGGCATCATCATCCTGCG < 41bp 0.825745673358823 0.580097389174762 0.24766657 0.21410239 prediction 0.491296568368121 Functional Loss - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57155642 chr16:57155644 nonsynonymous SNV 0.896 4 23 hm5C_associated_SNPs_66853 0 0 1 0 2 CPNE2 chr16:57155586 3'AG 57155586 Downstream 59bp
chr16 57155644 57155644 1 + C T UCEC 57155642 + 57155622 57155662 41 AAGAAGAAGAACTATAAAAACTCGGGCATCATCATCCTGCG AAGAAGAAGAACTATAAAAACTTGGGCATCATCATCCTGCG < 41bp 0.825745673358823 0.580097389174762 0.24766657 0.21410239 prediction 0.491296568368121 Functional Loss - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57155642 chr16:57155644 nonsynonymous SNV 0.896 4 23 hm5C_associated_SNPs_66853 0 0 1 0 2 CPNE2 chr16:57155672 5'GT 57155672 Upstream 29bp
chr17 34964119 34964119 1 + A C UCEC 34964118 + 34964098 34964138 41 CCTTTCAGACCAAAGCCCAGCAGGGCTGGCTCGTGGCCGGC CCTTTCAGACCAAAGCCCAGCCGGGCTGGCTCGTGGCCGGC < 41bp 0.783346491023519 0.537699824126817 0.8946275 0.71702135 prediction 0.491293333793405 Functional Loss - MRM1 ENSG00000129282 CDS Human other chr17:34964118 chr17:34964119 nonsynonymous SNV 0.999 0 22 hm5C_associated_SNPs_66854 0 0 1 0 1 MRM1 chr17:34964106 3'AG 34964106 Downstream 14bp
chr16 318854 318854 1 + G C COAD 318853 + 318833 318873 41 TGCATGTCCGCGTCTTGTGACGGGTGTGTGGGAAGCCGCCC TGCATGTCCGCGTCTTGTGACCGGTGTGTGGGAAGCCGCCC < 41bp 0.745632692273381 0.433489915599784 0.9291055 0.49833024 prediction 0.491265384546761 Functional Loss - RGS11 ENSG00000167930;ENSG00000242173;ENSG00000269881 CDS Human other chr16:318853 chr16:318854 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_66859 0 0 0 0 1 RGS11 chr16:318775 3'AG 318775 Downstream 80bp
chr16 846984 846984 1 + C T rs531301865 846982 + 846962 847002 41 TGGATGGGAGCCCCCCAGGGCTCGAGGGTCTGCTGGGGGGC TGGATGGGAGCCCCCCAGGGCTTGAGGGTCTGCTGGGGGGC < 41bp 0.765445817773733 0.519813255942669 0.4064083 0.36441687 prediction 0.491265123662129 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:846982 chr16:846984 synonymous SNV . 0 23 hm5C_associated_SNPs_66860 0 0 1 0 1 CHTF18 chr16:846961 3'AG 846961 Downstream 24bp
chr1 228400286 228400286 1 - G A KIRC 228400288 - 228400268 228400308 41 CCGTCCTTCTTCCACACCGTCTCGGGCTTGGGCTCGCCGGT CCGTCCTTCTTCCACACCGTCTTGGGCTTGGGCTCGCCGGT < 41bp 0.749374054235722 0.503745394241866 0.09650326 0.1713863 prediction 0.491257319987713 Functional Loss - OBSCN ENSG00000154358 CDS Human protein_coding chr1:228400288 chr1:228400286 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_66862 0 0 1 0 1 OBSCN chr1:228400222 5'GT 228400222 Upstream 65bp
chr3 38407197 38407197 1 + C T LUAD 38407195 + 38407175 38407215 41 CTGTGGGTGGTGCTCAGGCTCTCAGCTGCCTCACGGGGTCC CTGTGGGTGGTGCTCAGGCTCTTAGCTGCCTCACGGGGTCC < 41bp 0.796118831262584 0.550492288910348 0.1095444 0.13423744 prediction 0.491253084704472 Functional Loss - XYLB ENSG00000093217 CDS Human protein_coding chr3:38407195 chr3:38407197 synonymous SNV . 0 23 hm5C_associated_SNPs_66863 0 0 1 0 2 XYLB chr3:38407099 3'AG 38407099 Downstream 99bp
chr3 38407197 38407197 1 + C T LUAD 38407195 + 38407175 38407215 41 CTGTGGGTGGTGCTCAGGCTCTCAGCTGCCTCACGGGGTCC CTGTGGGTGGTGCTCAGGCTCTTAGCTGCCTCACGGGGTCC < 41bp 0.796118831262584 0.550492288910348 0.1095444 0.13423744 prediction 0.491253084704472 Functional Loss - XYLB ENSG00000093217 CDS Human protein_coding chr3:38407195 chr3:38407197 synonymous SNV . 0 23 hm5C_associated_SNPs_66863 0 0 1 0 2 XYLB chr3:38407227 5'GT 38407227 Upstream 31bp
chr17 18793149 18793149 1 + G T KIRC 18793146 + 18793126 18793166 41 CTGTCACAGATCCCAGATTACAGGAATGCAGTAATCGTGGC CTGTCACAGATCCCAGATTACAGTAATGCAGTAATCGTGGC < 41bp 0.874064178133945 0.628437772292836 0.49670854 0.3163358 prediction 0.491252811682216 Functional Loss - PRPSAP2 ENSG00000141127 CDS Human protein_coding chr17:18793146 chr17:18793149 stopgain 1.000 1 24 hm5C_associated_SNPs_66864 0 0 1 0 2 PRPSAP2 chr17:18793135 3'AG 18793135 Downstream 15bp
chr17 18793149 18793149 1 + G T KIRC 18793146 + 18793126 18793166 41 CTGTCACAGATCCCAGATTACAGGAATGCAGTAATCGTGGC CTGTCACAGATCCCAGATTACAGTAATGCAGTAATCGTGGC < 41bp 0.874064178133945 0.628437772292836 0.49670854 0.3163358 prediction 0.491252811682216 Functional Loss - PRPSAP2 ENSG00000141127 CDS Human protein_coding chr17:18793146 chr17:18793149 stopgain 1.000 1 24 hm5C_associated_SNPs_66864 0 0 1 0 2 PRPSAP2 chr17:18793190 5'GT 18793190 Upstream 42bp
chr2 96071347 96071347 1 + T C UCEC 96071346 + 96071326 96071366 41 GAAGGTTACTCACAGTTCTGCTGCAGGCTCAGAAGTGGCCC GAAGGTTACTCACAGTTCTGCCGCAGGCTCAGAAGTGGCCC < 41bp 0.745624519222206 0.497923667579213 0.11763409 0.10295579 prediction 0.491249038444412 Functional Loss - FAHD2A ENSG00000115042 CDS Human protein_coding chr2:96071346 chr2:96071347 nonsynonymous SNV 0.831 2 22 hm5C_associated_SNPs_66865 0 0 1 0 1 FAHD2A chr2:96071301 3'AG 96071301 Downstream 47bp
chr11 63276290 63276290 1 + C T CESC 63276288 + 63276268 63276308 41 GTGTGGCTGCAGCCTGTGTCCCCGGCCAGATATCGCCTTCC GTGTGGCTGCAGCCTGTGTCCCTGGCCAGATATCGCCTTCC < 41bp 0.787753575384072 0.542132806035063 0.16151547 0.07745999 prediction 0.491241538698019 Functional Loss - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63276288 chr11:63276290 nonsynonymous SNV 0.264 1 23 hm5C_associated_SNPs_66866 0 0 0 0 3 LGALS12 chr11:63276247 3'AG 63276247 Downstream 44bp
chr11 63276290 63276290 1 + C T CESC 63276288 + 63276268 63276308 41 GTGTGGCTGCAGCCTGTGTCCCCGGCCAGATATCGCCTTCC GTGTGGCTGCAGCCTGTGTCCCTGGCCAGATATCGCCTTCC < 41bp 0.787753575384072 0.542132806035063 0.16151547 0.07745999 prediction 0.491241538698019 Functional Loss - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63276288 chr11:63276290 nonsynonymous SNV 0.264 1 23 hm5C_associated_SNPs_66866 0 0 0 0 3 LGALS12 chr11:63276250 3'AG 63276250 Downstream 41bp
chr11 63276290 63276290 1 + C T CESC 63276288 + 63276268 63276308 41 GTGTGGCTGCAGCCTGTGTCCCCGGCCAGATATCGCCTTCC GTGTGGCTGCAGCCTGTGTCCCTGGCCAGATATCGCCTTCC < 41bp 0.787753575384072 0.542132806035063 0.16151547 0.07745999 prediction 0.491241538698019 Functional Loss - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63276288 chr11:63276290 nonsynonymous SNV 0.264 1 23 hm5C_associated_SNPs_66866 0 0 0 0 3 LGALS12 chr11:63276257 3'AG 63276257 Downstream 34bp
chr11 44105286 44105286 1 + G T PAAD 44105283 + 44105263 44105303 41 AGGTGCTTGCAGGCAAATCCCAAGTGGCAGAAGACCCCCGT AGGTGCTTGCAGGCAAATCCCAATTGGCAGAAGACCCCCGT < 41bp 0.745619709217879 0.354882644572026 0.3524007 0.12803215 prediction 0.491239418435757 Functional Loss - ACCS ENSG00000110455 CDS Human protein_coding chr11:44105283 chr11:44105286 nonsynonymous SNV 0.022 0 24 hm5C_associated_SNPs_66868 0 0 1 0 1 ACCS chr11:44105245 3'AG 44105245 Downstream 42bp
chr11 20648388 20648388 1 + G T COAD 20648385 + 20648365 20648405 41 TGGGAGAAACTCACGGATGCCACGGTGGGCTTCTAATTTTA TGGGAGAAACTCACGGATGCCACTGTGGGCTTCTAATTTTA < 41bp 0.74561516609296 0.353578465626257 0.042776078 0.016742557 prediction 0.491230332185921 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20648385 chr11:20648388 synonymous SNV . 0 24 hm5C_associated_SNPs_66870 0 0 0 0 1 SLC6A5 chr11:20648388 5'GT 20648388 Upstream 1bp
chr11 20648387 20648387 1 + C T COAD 20648385 + 20648365 20648405 41 TGGGAGAAACTCACGGATGCCACGGTGGGCTTCTAATTTTA TGGGAGAAACTCACGGATGCCATGGTGGGCTTCTAATTTTA < 41bp 0.74561516609296 0.476949573374343 0.042776078 0.07384813 prediction 0.491230332185921 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20648385 chr11:20648387 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_66871 0 0 0 0 1 SLC6A5 chr11:20648388 5'GT 20648388 Upstream 2bp
chr1 217822288 217822288 1 + G T UCEC 217822285 + 217822265 217822305 41 TTAAAATCCAAAGCTGGTTTCGAGGATGTCAAGTTCGGGCA TTAAAATCCAAAGCTGGTTTCGATGATGTCAAGTTCGGGCA < 41bp 0.745611434717694 0.366866241878427 0.910954 0.08421782 prediction 0.491222869435388 Functional Loss - SPATA17 ENSG00000162814 CDS Human protein_coding chr1:217822285 chr1:217822288 stopgain 1.000 1 24 hm5C_associated_SNPs_66872 0 0 0 0 1 SPATA17 chr1:217822313 5'GT 217822313 Upstream 26bp
chr1 203830822 203830822 1 + A C STAD 203830818 + 203830798 203830838 41 GTGGCCAGGGTCAGAAAGTGCAGAAGGTTATGGTGCAGCCC GTGGCCAGGGTCAGAAAGTGCAGACGGTTATGGTGCAGCCC < 41bp 0.848957567312282 0.603353896326398 0.89107704 0.8900465 prediction 0.491207341971768 Functional Loss - SNRPE ENSG00000182004 CDS Human protein_coding chr1:203830818 chr1:203830822 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_66875 0 0 1 1 2 SNRPE chr1:203830841 5'GT 203830841 Upstream 20bp
chr1 203830822 203830822 1 + A C STAD 203830818 + 203830798 203830838 41 GTGGCCAGGGTCAGAAAGTGCAGAAGGTTATGGTGCAGCCC GTGGCCAGGGTCAGAAAGTGCAGACGGTTATGGTGCAGCCC < 41bp 0.848957567312282 0.603353896326398 0.89107704 0.8900465 prediction 0.491207341971768 Functional Loss - SNRPE ENSG00000182004 CDS Human protein_coding chr1:203830818 chr1:203830822 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_66875 0 0 1 1 2 SNRPE chr1:203830871 5'GT 203830871 Upstream 50bp
chr12 69229704 69229704 1 + C T STAD 69229702 + 69229682 69229722 41 TAGAATTTGAAGTTGAATCTCTCGACTCAGAAGATTATAGC TAGAATTTGAAGTTGAATCTCTTGACTCAGAAGATTATAGC < 41bp 0.756466721691977 0.51086553115239 0.12765858 0.05322814 prediction 0.491202381079174 Functional Loss - MDM2 ENSG00000135679 CDS Human protein_coding chr12:69229702 chr12:69229704 synonymous SNV . 0 23 hm5C_associated_SNPs_66876 0 0 1 0 1 MDM2 chr12:69229609 3'AG 69229609 Downstream 96bp
chr2 47604206 47604206 1 + C T UCEC 47604204 + 47604184 47604224 41 CAACTGGATCCAAAATTTATCACGAGTATTTTGGTATGATT CAACTGGATCCAAAATTTATCATGAGTATTTTGGTATGATT < 41bp 0.791113327381194 0.545514975438085 0.20831886 0.19795308 prediction 0.491196703886218 Functional Loss - EPCAM ENSG00000119888 CDS Human protein_coding chr2:47604204 chr2:47604206 nonsynonymous SNV 0.005 2 23 hm5C_associated_SNPs_66877 0 0 1 0 2 EPCAM chr2:47604153 3'AG 47604153 Downstream 54bp
chr2 47604206 47604206 1 + C T UCEC 47604204 + 47604184 47604224 41 CAACTGGATCCAAAATTTATCACGAGTATTTTGGTATGATT CAACTGGATCCAAAATTTATCATGAGTATTTTGGTATGATT < 41bp 0.791113327381194 0.545514975438085 0.20831886 0.19795308 prediction 0.491196703886218 Functional Loss - EPCAM ENSG00000119888 CDS Human protein_coding chr2:47604204 chr2:47604206 nonsynonymous SNV 0.005 2 23 hm5C_associated_SNPs_66877 0 0 1 0 2 EPCAM chr2:47604216 5'GT 47604216 Upstream 11bp
chr15 45974714 45974714 1 + A C UCEC 45974710 + 45974690 45974730 41 TGTCACACCTCCAATGAGCCCACCAGATGTCCTCAAGACCA TGTCACACCTCCAATGAGCCCACCCGATGTCCTCAAGACCA < 41bp 0.745596307846648 0.30723671740838 0.035509974 0.03243777 prediction 0.491192615693295 Functional Loss - SQOR ENSG00000137767 CDS Human protein_coding chr15:45974710 chr15:45974714 synonymous SNV . 0 25 hm5C_associated_SNPs_66878 0 0 0 0 1 SQOR chr15:45974676 3'AG 45974676 Downstream 39bp
chr21 43863525 43863525 1 + G T rs375755307 43863522 + 43863502 43863542 41 AAATCGTCAACACCTGTCCACAGGACAGTAAGTGCCTCACC AAATCGTCAACACCTGTCCACAGTACAGTAAGTGCCTCACC < 41bp 0.745594573876596 0.357946611741633 0.29143986 0.11935115 prediction 0.491189147753191 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43863522 chr21:43863525 nonsynonymous SNV 0.923 2 24 hm5C_associated_SNPs_66880 0 0 0 0 1 UBASH3A chr21:43863528 5'GT 43863528 Upstream 4bp
chr19 43858042 43858042 1 + G T LAML 43858040 + 43858020 43858060 41 TCTGCCAGTTTGGGACAGTTCAGCATGTGTGGAAGGTGTCC TCTGCCAGTTTGGGACAGTTCATCATGTGTGGAAGGTGTCC < 41bp 0.887125825527826 0.641541029337009 0.51629627 0.17669228 prediction 0.491169592381635 Functional Loss - CD177 ENSG00000204936 CDS Human protein_coding chr19:43858040 chr19:43858042 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_66888 0 0 0 0 1 CD177 chr19:43858005 3'AG 43858005 Downstream 38bp
chr1 2235813 2235813 1 + G T KICH 2235810 + 2235790 2235830 41 GGACCTGGGCTCCCCGGGTGCGCGTGCCCTGCCCTCGGCCG GGACCTGGGCTCCCCGGGTGCGCTTGCCCTGCCCTCGGCCG < 41bp 0.745574178461956 0.341970940604307 0.36216843 0.26266375 prediction 0.491148356923912 Functional Loss - SKI ENSG00000157933 CDS Human protein_coding chr1:2235810 chr1:2235813 nonsynonymous SNV 0.008 1 24 hm5C_associated_SNPs_66890 0 0 1 0 1 SKI chr1:2235732 3'AG 2235732 Downstream 82bp
chr16 720948 720948 1 + G C rs145947759 720944 + 720924 720964 41 GGCCCTGGAGGACGTGAAGACGGTGGTGTGCAGGAACGTGG GGCCCTGGAGGACGTGAAGACGGTCGTGTGCAGGAACGTGG < 41bp 0.820625506293239 0.575051792429996 0.7267304 0.6450366 prediction 0.491147427726487 Functional Loss - RHOT2 ENSG00000140983 CDS Human protein_coding chr16:720944 chr16:720948 synonymous SNV . 0 25 hm5C_associated_SNPs_66891 0 0 1 0 1 RHOT2 chr16:721000 5'GT 721000 Upstream 53bp
chr19 58146122 58146122 1 + G T LUAD 58146120 + 58146100 58146140 41 ACTTTGCACTTACGTCCTCCCTGGGTAAGGCCCTCATACTC ACTTTGCACTTACGTCCTCCCTTGGTAAGGCCCTCATACTC < 41bp 0.875023616621349 0.629458869721 0.2840309 0.007851481 prediction 0.4911294938007 Functional Loss - ZNF211 ENSG00000121417 CDS Human protein_coding chr19:58146120 chr19:58146122 synonymous SNV . 0 23 hm5C_associated_SNPs_66892 0 0 1 0 1 ZNF211 chr19:58146123 5'GT 58146123 Upstream 2bp
chr3 40353017 40353017 1 + G T SARC 40353015 + 40352995 40353035 41 CTGAATACGGAGAGGTTATTCAGCTTCAAGGTGACCAAAGA CTGAATACGGAGAGGTTATTCATCTTCAAGGTGACCAAAGA < 41bp 0.74556299092454 0.416637550095079 0.43129382 0.09544259 prediction 0.49112598184908 Functional Loss - EIF1B ENSG00000114784 CDS Human protein_coding chr3:40353015 chr3:40353017 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_66894 0 0 1 0 2 EIF1B chr3:40352961 3'AG 40352961 Downstream 57bp
chr3 40353017 40353017 1 + G T SARC 40353015 + 40352995 40353035 41 CTGAATACGGAGAGGTTATTCAGCTTCAAGGTGACCAAAGA CTGAATACGGAGAGGTTATTCATCTTCAAGGTGACCAAAGA < 41bp 0.74556299092454 0.416637550095079 0.43129382 0.09544259 prediction 0.49112598184908 Functional Loss - EIF1B ENSG00000114784 CDS Human protein_coding chr3:40353015 chr3:40353017 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_66894 0 0 1 0 2 EIF1B chr3:40353062 5'GT 40353062 Upstream 46bp
chr8 22020094 22020094 1 + C T BLCA 22020092 + 22020072 22020112 41 GCCCCACCGTGTCAGGACTACTCCGCAGCTCCCCGGGGCCG GCCCCACCGTGTCAGGACTACTTCGCAGCTCCCCGGGGCCG < 41bp 0.745559823477867 0.476115066390785 0.3113587 0.17449266 prediction 0.491119646955735 Functional Loss - SFTPC ENSG00000168484 CDS Human protein_coding chr8:22020092 chr8:22020094 nonsynonymous SNV 0.539 3 23 hm5C_associated_SNPs_66895 0 0 0 0 1 SFTPC chr8:22020087 3'AG 22020087 Downstream 8bp
chr6 73751764 73751764 1 + C T UCEC 73751762 + 73751742 73751782 41 GCAAGGAAGACTGAGGTTTGCTCGAAAGCCCTTCTGTGTTA GCAAGGAAGACTGAGGTTTGCTTGAAAGCCCTTCTGTGTTA < 41bp 0.798223460565619 0.552676308302322 0.21480045 0.10111314 prediction 0.491094304526593 Functional Loss - KCNQ5 ENSG00000185760 CDS Human protein_coding chr6:73751762 chr6:73751764 stopgain 0.996 1 23 hm5C_associated_SNPs_66900 0 0 0 0 1 KCNQ5 chr6:73751785 5'GT 73751785 Upstream 22bp
chr11 134237200 134237200 1 + C T rs117422861 134237198 + 134237178 134237218 41 TACTGGACGGGGTGGTTTGACTCGTGGGGAGGCCCTCACAA TACTGGACGGGGTGGTTTGACTTGTGGGGAGGCCCTCACAA < 41bp 0.819278473642879 0.573735245808695 0.13617077 0.21356493 prediction 0.491086455668367 Functional Loss - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134237198 chr11:134237200 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_66902 0 0 1 0 2 GLB1L2 chr11:134237151 3'AG 134237151 Downstream 50bp
chr11 134237200 134237200 1 + C T rs117422861 134237198 + 134237178 134237218 41 TACTGGACGGGGTGGTTTGACTCGTGGGGAGGCCCTCACAA TACTGGACGGGGTGGTTTGACTTGTGGGGAGGCCCTCACAA < 41bp 0.819278473642879 0.573735245808695 0.13617077 0.21356493 prediction 0.491086455668367 Functional Loss - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134237198 chr11:134237200 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_66902 0 0 1 0 2 GLB1L2 chr11:134237235 5'GT 134237235 Upstream 36bp
chr5 139740454 139740454 1 + C T rs34507975 139740452 + 139740432 139740472 41 CAGGCCGGTGGAGTGCCCCCCACGTGCCCACCCTGGCACTG CAGGCCGGTGGAGTGCCCCCCATGTGCCCACCCTGGCACTG < 41bp 0.772600720527722 0.527061410879262 0.5412098 0.2753993 prediction 0.491078619296919 Functional Loss - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139740452 chr5:139740454 synonymous SNV . 0 23 hm5C_associated_SNPs_66904 0 0 0 0 1 SLC4A9 chr5:139740397 3'AG 139740397 Downstream 58bp
chr1 186934692 186934692 1 + T C LAML 186934691 + 186934671 186934711 41 CATAATCTCCTTTGACTTTTCTGCAAGGCCAAGTGACTCTA CATAATCTCCTTTGACTTTTCCGCAAGGCCAAGTGACTCTA < 41bp 0.789242127569685 0.543715085153358 0.17149305 0.06952742 prediction 0.491054084832655 Functional Loss - PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186934691 chr1:186934692 synonymous SNV . 0 22 hm5C_associated_SNPs_66907 0 0 0 0 1 PLA2G4A chr1:186934725 5'GT 186934725 Upstream 34bp
chr17 6674216 6674216 1 + T C rs35588057 6674215 + 6674195 6674235 41 CAAGCCCAGGACCAGCTCCCCTAGAGGAGATAAAGCAGCCT CAAGCCCAGGACCAGCTCCCCCAGAGGAGATAAAGCAGCCT < 41bp 0.756297586111578 0.510779892702952 0.3349254 0.5655547 prediction 0.491035386817251 Functional Loss - XAF1 ENSG00000132530 CDS Human protein_coding chr17:6674215 chr17:6674216 synonymous SNV . 0 22 hm5C_associated_SNPs_66911 0 0 0 0 1 XAF1 chr17:6674303 5'GT 6674303 Upstream 88bp
chr15 20776664 20776664 1 + G C rs564252776 20776663 + 20776643 20776683 41 GGAGGCACCTCGGCCCATGCCGAGTGTCCCACAGGACCTGG GGAGGCACCTCGGCCCATGCCCAGTGTCCCACAGGACCTGG < 41bp 0.843761739087903 0.598247925851717 0.7727772 0.1721527 prediction 0.491027626472372 Functional Loss - GOLGA8CP ENSG00000181984 ncRNA_exonic Human unprocessed_pseudogene chr15:20776663 chr15:20776664 . . 0 22 hm5C_associated_SNPs_66914 0 0 0 0 2 GOLGA8CP chr15:20776609 3'AG 20776609 Downstream 56bp
chr15 20776664 20776664 1 + G C rs564252776 20776663 + 20776643 20776683 41 GGAGGCACCTCGGCCCATGCCGAGTGTCCCACAGGACCTGG GGAGGCACCTCGGCCCATGCCCAGTGTCCCACAGGACCTGG < 41bp 0.843761739087903 0.598247925851717 0.7727772 0.1721527 prediction 0.491027626472372 Functional Loss - GOLGA8CP ENSG00000181984 ncRNA_exonic Human unprocessed_pseudogene chr15:20776663 chr15:20776664 . . 0 22 hm5C_associated_SNPs_66914 0 0 0 0 2 GOLGA8CP chr15:20776700 5'GT 20776700 Upstream 37bp
chr5 169020417 169020417 1 + C T UCEC 169020415 + 169020395 169020435 41 TTAGTGAAAAGCAGCTGAAGCACCAAGTAGATCATCAGAAG TTAGTGAAAAGCAGCTGAAGCATCAAGTAGATCATCAGAAG < 41bp 0.745513092756547 0.456713546507918 0.5468907 0.28604126 prediction 0.491026185513094 Functional Loss - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169020415 chr5:169020417 synonymous SNV . 0 23 hm5C_associated_SNPs_66915 0 0 1 0 1 SPDL1 chr5:169020358 3'AG 169020358 Downstream 60bp
chr1 3644330 3644330 1 + G T SARC 3644327 + 3644307 3644347 41 GCCAAGAACGGGGCCGCCAGCAAGCGTGGTGAGCGGCCGGC GCCAAGAACGGGGCCGCCAGCAATCGTGGTGAGCGGCCGGC < 41bp 0.745502221822443 0.384554559303314 0.8179065 0.1557365 prediction 0.491004443644885 Functional Loss - TP73 ENSG00000078900 CDS Human protein_coding chr1:3644327 chr1:3644330 nonsynonymous SNV 0.750 4 24 hm5C_associated_SNPs_66918 0 0 0 0 1 TP73 chr1:3644334 5'GT 3644334 Upstream 5bp
chr10 119017346 119017346 1 + G T LUAD 119017343 + 119017323 119017363 41 CAAACATGGGCATCGCCATGCTGGAGCCAGCCCTGCCCATC CAAACATGGGCATCGCCATGCTGTAGCCAGCCCTGCCCATC < 41bp 0.92017811185545 0.674678350328478 0.3406821 0.06207356 prediction 0.490999523053943 Functional Loss - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119017343 chr10:119017346 stopgain 0.998 1 24 hm5C_associated_SNPs_66920 0 0 0 0 2 SLC18A2 chr10:119017308 3'AG 119017308 Downstream 39bp
chr10 119017346 119017346 1 + G T LUAD 119017343 + 119017323 119017363 41 CAAACATGGGCATCGCCATGCTGGAGCCAGCCCTGCCCATC CAAACATGGGCATCGCCATGCTGTAGCCAGCCCTGCCCATC < 41bp 0.92017811185545 0.674678350328478 0.3406821 0.06207356 prediction 0.490999523053943 Functional Loss - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119017343 chr10:119017346 stopgain 0.998 1 24 hm5C_associated_SNPs_66920 0 0 0 0 2 SLC18A2 chr10:119017403 5'GT 119017403 Upstream 58bp
chr16 89289569 89289569 1 + C T UCEC 89289567 + 89289547 89289587 41 TCATGTGTGATGATTTAGGACGCGGTGACCTTTGACGACGT TCATGTGTGATGATTTAGGACGTGGTGACCTTTGACGACGT < 41bp 0.778947760354168 0.533448562721332 0.38015178 0.41312608 prediction 0.490998395265671 Functional Loss - ZNF778 ENSG00000170100 CDS Human protein_coding chr16:89289567 chr16:89289569 nonsynonymous SNV 0.005 0 23 hm5C_associated_SNPs_66921 0 0 0 0 1 ZNF778 chr16:89289565 3'AG 89289565 Downstream 5bp
chr3 38047351 38047351 1 + G T rs374808100 38047349 + 38047329 38047369 41 TGGCCTGGGGCCAGGAGTACCTGAAGACTCACCCAGCAGGG TGGCCTGGGGCCAGGAGTACCTTAAGACTCACCCAGCAGGG < 41bp 0.892263226739463 0.646775336833034 0.34782255 0.1870394 prediction 0.490975779812857 Functional Loss - VILL ENSG00000136059 CDS Human protein_coding chr3:38047349 chr3:38047351 synonymous SNV . 0 23 hm5C_associated_SNPs_66923 0 0 0 0 1 VILL chr3:38047283 3'AG 38047283 Downstream 69bp
chr6 39025308 39025308 1 + C T SKCM 39025306 + 39025286 39025326 41 TGGCCAGATGGGGAGCCAGGCTCGTTCGTGAATGTCAGCTG TGGCCAGATGGGGAGCCAGGCTTGTTCGTGAATGTCAGCTG < 41bp 0.820997047489963 0.575517044389267 0.35249135 0.22201881 prediction 0.490960006201394 Functional Loss - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39025306 chr6:39025308 nonsynonymous SNV 0.779 2 23 hm5C_associated_SNPs_66926 0 0 0 0 2 GLP1R chr6:39025248 3'AG 39025248 Downstream 61bp
chr6 39025308 39025308 1 + C T SKCM 39025306 + 39025286 39025326 41 TGGCCAGATGGGGAGCCAGGCTCGTTCGTGAATGTCAGCTG TGGCCAGATGGGGAGCCAGGCTTGTTCGTGAATGTCAGCTG < 41bp 0.820997047489963 0.575517044389267 0.35249135 0.22201881 prediction 0.490960006201394 Functional Loss - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39025306 chr6:39025308 nonsynonymous SNV 0.779 2 23 hm5C_associated_SNPs_66926 0 0 0 0 2 GLP1R chr6:39025355 5'GT 39025355 Upstream 48bp
chr1 26898396 26898396 1 + G T STAD 26898394 + 26898374 26898414 41 ACATCTGGAGCCTGGGCATTCTGCTGTACACCATGCTGGCA ACATCTGGAGCCTGGGCATTCTTCTGTACACCATGCTGGCA < 41bp 0.745464115422453 0.399881625389631 0.1781621 0.14238298 prediction 0.490928230844906 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26898394 chr1:26898396 synonymous SNV . 0 23 hm5C_associated_SNPs_66930 0 0 0 0 1 RPS6KA1 chr1:26898340 3'AG 26898340 Downstream 57bp
chr19 14574936 14574936 1 + C T PRAD 14574934 + 14574914 14574954 41 CAGCTCACCTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCC CAGCTCACCTCAGAAGAGCTCGTGGGATCCTCCTTCCAGCC < 41bp 0.783313906324491 0.537851727550851 0.6391419 0.7018836 prediction 0.490924357547281 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574934 chr19:14574936 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_66931 0 0 1 0 2 PKN1 chr19:14574872 3'AG 14574872 Downstream 65bp
chr19 14574936 14574936 1 + C T PRAD 14574934 + 14574914 14574954 41 CAGCTCACCTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCC CAGCTCACCTCAGAAGAGCTCGTGGGATCCTCCTTCCAGCC < 41bp 0.783313906324491 0.537851727550851 0.6391419 0.7018836 prediction 0.490924357547281 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574934 chr19:14574936 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_66931 0 0 1 0 2 PKN1 chr19:14574965 5'GT 14574965 Upstream 30bp
chr6 135507142 135507142 1 + G T UCEC 135507139 + 135507119 135507159 41 AAAGCGTCACTTGGGGAAAACAAGGTGGACCCGGGAAGAGG AAAGCGTCACTTGGGGAAAACAATGTGGACCCGGGAAGAGG < 41bp 0.745458060721827 0.417141605390155 0.9083588 0.19502604 prediction 0.490916121443653 Functional Loss - MYB ENSG00000118513 CDS Human protein_coding chr6:135507139 chr6:135507142 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_66934 0 0 1 0 1 MYB chr6:135507158 5'GT 135507158 Upstream 17bp
chr9 128099784 128099784 1 + C T rs62637637 128099782 + 128099762 128099802 41 AAATGAAGAGCGAGAACTCCCTCCAGCTGCAGCCATTGGTG AAATGAAGAGCGAGAACTCCCTTCAGCTGCAGCCATTGGTG < 41bp 0.839568636895806 0.594110995960015 0.9233874 0.39484718 prediction 0.490915281871581 Functional Loss - GAPVD1 ENSG00000165219 CDS Human protein_coding chr9:128099782 chr9:128099784 nonsynonymous SNV 0.961 1 23 hm5C_associated_SNPs_66935 0 0 1 0 1 GAPVD1 chr9:128099870 5'GT 128099870 Upstream 87bp
chr11 63273978 63273978 1 + G T SARC 63273976 + 63273956 63273996 41 CAATTCCTGACAGCTTCATTCTGCAACCACCAGTCTTCCAC CAATTCCTGACAGCTTCATTCTTCAACCACCAGTCTTCCAC < 41bp 0.745449336494458 0.410179526932815 0.36353546 0.35373253 prediction 0.490898672988916 Functional Loss - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63273976 chr11:63273978 synonymous SNV . 0 23 hm5C_associated_SNPs_66937 0 0 0 0 1 LGALS12 chr11:63273999 5'GT 63273999 Upstream 22bp
chr16 69350234 69350234 1 + C T UCEC 69350232 + 69350212 69350252 41 ATTTACGAAGCAAAGAGAAACACGGCAAGAAGCCAGTCAAA ATTTACGAAGCAAAGAGAAACATGGCAAGAAGCCAGTCAAA < 41bp 0.745435301825869 0.48529415766506 0.45473546 0.43955195 prediction 0.490870603651739 Functional Loss - VPS4A ENSG00000132612;ENSG00000260914 CDS Human other chr16:69350232 chr16:69350234 synonymous SNV . 0 23 hm5C_associated_SNPs_66939 0 0 1 0 1 VPS4A chr16:69350275 5'GT 69350275 Upstream 42bp
chr16 28943679 28943679 1 + C T ACC 28943677 + 28943657 28943697 41 CTCTCCACAGAGGGAGATAACGCTGTGCTGCAGTGCCTCAA CTCTCCACAGAGGGAGATAACGTTGTGCTGCAGTGCCTCAA < 41bp 0.746119540847549 0.50068528148343 0.8678222 0.91663826 prediction 0.490868518728238 Functional Loss - CD19 ENSG00000177455 CDS Human protein_coding chr16:28943677 chr16:28943679 nonsynonymous SNV 0.005 0 23 hm5C_associated_SNPs_66940 0 0 0 0 1 CD19 chr16:28943667 3'AG 28943667 Downstream 13bp
chr11 76826634 76826634 1 + C T UCEC 76826632 + 76826612 76826652 41 TGGAACGGGCCCTGGAGTGACACGTGAGGCCTGGGGATGGG TGGAACGGGCCCTGGAGTGACATGTGAGGCCTGGGGATGGG < 41bp 0.745427587367085 0.485605670269694 0.44983622 0.6769671 prediction 0.490855174734171 Functional Loss - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76826632 chr11:76826634 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_66942 0 0 0 0 1 CAPN5 chr11:76826634 5'GT 76826634 Upstream 1bp
chr2 179320856 179320856 1 + G T LUAD 179320853 + 179320833 179320873 41 GTGCTCACTGTCTGTGCATGCTGGAATTCGAGGGGAAGCAA GTGCTCACTGTCTGTGCATGCTGTAATTCGAGGGGAAGCAA < 41bp 0.907772065723429 0.662349458668322 0.53953207 0.28452358 prediction 0.490845214110213 Functional Loss - DFNB59 ENSG00000204311 CDS Human protein_coding chr2:179320853 chr2:179320856 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_66943 0 0 0 0 1 DFNB59 chr2:179320878 5'GT 179320878 Upstream 23bp
chr17 16285294 16285294 1 + A T DLBC 16285290 + 16285270 16285310 41 GTGGAGCCCAGTGACACCATCGAAAATGTGAAGGCCAAGAT GTGGAGCCCAGTGACACCATCGAATATGTGAAGGCCAAGAT < 41bp 0.864432889775316 0.619010560826495 0.350178 0.25406116 prediction 0.490844657897642 Functional Loss - UBB ENSG00000170315 CDS Human protein_coding chr17:16285290 chr17:16285294 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_66944 0 0 1 0 1 UBB chr17:16285216 3'AG 16285216 Downstream 79bp
chr11 75480093 75480093 1 + G T LUSC 75480090 + 75480070 75480110 41 CTGCGCGGCGAGCGTCAGGCCGAGGCTGACCGGAGCCAGCG CTGCGCGGCGAGCGTCAGGCCGATGCTGACCGGAGCCAGCG < 41bp 0.918630942644319 0.673208644696678 0.9219056 0.6022409 prediction 0.490844595895282 Functional Loss - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75480090 chr11:75480093 nonsynonymous SNV 0.094 1 24 hm5C_associated_SNPs_66945 0 0 1 0 1 DGAT2 chr11:75480157 5'GT 75480157 Upstream 65bp
chr2 228137730 228137730 1 + A T LUSC 228137726 + 228137706 228137746 41 TCCTGGCTCCCCTGGGTCCCCAGGACCTGCAGGACCAGCTG TCCTGGCTCCCCTGGGTCCCCAGGTCCTGCAGGACCAGCTG < 41bp 0.854139484030599 0.608724738675144 0.94092965 0.94414926 prediction 0.490829490710909 Functional Loss - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228137726 chr2:228137730 synonymous SNV . 0 25 hm5C_associated_SNPs_66946 0 0 1 0 1 COL4A3 chr2:228137665 3'AG 228137665 Downstream 66bp
chr19 55481476 55481476 1 + G A STAD 55481473 + 55481453 55481493 41 AGCAAGTTCAAGTATCTGATCACGACCTTCTCCCTGGCACA AGCAAGTTCAAGTATCTGATCACAACCTTCTCCCTGGCACA < 41bp 0.769931909022824 0.524526124583506 0.157787 0.036437124 prediction 0.490811568878636 Functional Loss - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55481473 chr19:55481476 synonymous SNV . 0 24 hm5C_associated_SNPs_66949 0 0 0 0 1 NLRP2 chr19:55481521 5'GT 55481521 Upstream 46bp
chr3 101476681 101476681 1 + G T UCEC 101476679 + 101476659 101476699 41 TACTTTTATGCCAGTTGCATCAGGACTGTCTCCACTATCAC TACTTTTATGCCAGTTGCATCATGACTGTCTCCACTATCAC < 41bp 0.745397167354757 0.413926270977281 0.92521405 0.32985216 prediction 0.490794334709513 Functional Loss - CEP97 ENSG00000182504 CDS Human protein_coding chr3:101476679 chr3:101476681 stopgain 0.974 1 23 hm5C_associated_SNPs_66952 0 0 1 0 1 CEP97 chr3:101476655 3'AG 101476655 Downstream 27bp
chr4 5731067 5731067 1 + G T COAD 5731065 + 5731045 5731085 41 GCCTTCCAACAGCAATATCACAGCATTCGCCCTGAAGGCCA GCCTTCCAACAGCAATATCACATCATTCGCCCTGAAGGCCA < 41bp 0.745393846338185 0.403801016815464 0.37396252 0.18298164 prediction 0.490787692676371 Functional Loss - EVC ENSG00000072840 CDS Human protein_coding chr4:5731065 chr4:5731067 nonsynonymous SNV 0.051 3 23 hm5C_associated_SNPs_66953 0 0 0 0 2 EVC chr4:5731034 3'AG 5731034 Downstream 34bp
chr4 5731067 5731067 1 + G T COAD 5731065 + 5731045 5731085 41 GCCTTCCAACAGCAATATCACAGCATTCGCCCTGAAGGCCA GCCTTCCAACAGCAATATCACATCATTCGCCCTGAAGGCCA < 41bp 0.745393846338185 0.403801016815464 0.37396252 0.18298164 prediction 0.490787692676371 Functional Loss - EVC ENSG00000072840 CDS Human protein_coding chr4:5731065 chr4:5731067 nonsynonymous SNV 0.051 3 23 hm5C_associated_SNPs_66953 0 0 0 0 2 EVC chr4:5731117 5'GT 5731117 Upstream 51bp
chr3 183823993 183823993 1 + G A GBM 183823990 + 183823970 183824010 41 TCTTCATCACCCACCTGCTGCACGTGGCCACCACCCAGCCC TCTTCATCACCCACCTGCTGCACATGGCCACCACCCAGCCC < 41bp 0.756082643882338 0.510692125058811 0.26290888 0.03632167 prediction 0.490781037647055 Functional Loss - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183823990 chr3:183823993 nonsynonymous SNV 0.885 2 24 hm5C_associated_SNPs_66954 0 0 0 0 1 HTR3E chr3:183823916 3'AG 183823916 Downstream 78bp
chr16 1551745 1551745 1 + G T SARC 1551743 + 1551723 1551763 41 ATGGCGGCGTCCCCCAAGCACAGCTGGCGGGCTCTGACTCG ATGGCGGCGTCCCCCAAGCACATCTGGCGGGCTCTGACTCG < 41bp 0.745382979525167 0.398959080137381 0.13735655 0.120281994 prediction 0.490765959050333 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1551743 chr16:1551745 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_66955 0 0 1 0 2 TELO2 chr16:1551664 3'AG 1551664 Downstream 82bp
chr16 1551745 1551745 1 + G T SARC 1551743 + 1551723 1551763 41 ATGGCGGCGTCCCCCAAGCACAGCTGGCGGGCTCTGACTCG ATGGCGGCGTCCCCCAAGCACATCTGGCGGGCTCTGACTCG < 41bp 0.745382979525167 0.398959080137381 0.13735655 0.120281994 prediction 0.490765959050333 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1551743 chr16:1551745 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_66955 0 0 1 0 2 TELO2 chr16:1551774 5'GT 1551774 Upstream 30bp
chr18 7888297 7888297 1 + G T UCEC 7888294 + 7888274 7888314 41 GGGCCACTGGGGAATCCTATCTGGAATATATCTGGAGACCC GGGCCACTGGGGAATCCTATCTGTAATATATCTGGAGACCC < 41bp 0.745378209098324 0.451189875651769 0.28509623 0.14284152 prediction 0.490756418196647 Functional Loss - PTPRM ENSG00000173482 CDS Human protein_coding chr18:7888294 chr18:7888297 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_66958 0 0 0 0 1 PTPRM chr18:7888375 5'GT 7888375 Upstream 79bp
chr10 94836399 94836399 1 + G T CESC 94836397 + 94836377 94836417 41 TTATTAAGGAGACCCTTCGACTGAATCCCCCAGTTCCAGGA TTATTAAGGAGACCCTTCGACTTAATCCCCCAGTTCCAGGA < 41bp 0.745356788911116 0.407153491440072 0.038511872 0.03930813 prediction 0.490713577822233 Functional Loss - CYP26A1 ENSG00000095596 CDS Human protein_coding chr10:94836397 chr10:94836399 synonymous SNV . 0 23 hm5C_associated_SNPs_66962 0 0 0 0 1 CYP26A1 chr10:94836453 5'GT 94836453 Upstream 55bp
chr11 22363281 22363281 1 + G T COAD 22363278 + 22363258 22363298 41 CTGGGCGTGGCCATTGTGGACATGGTCAACAACAGCACCAT CTGGGCGTGGCCATTGTGGACATTGTCAACAACAGCACCAT < 41bp 0.745355311036379 0.35500770170641 0.1817081 0.04385665 prediction 0.490710622072758 Functional Loss - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22363278 chr11:22363281 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_66963 0 0 0 0 1 SLC17A6 chr11:22363326 5'GT 22363326 Upstream 46bp
chr19 17974037 17974037 1 + C T BRCA 17974035 + 17974015 17974055 41 CCTGCGCCGTCAGCACAAGCCACGCTTCACCACCAAGAGGC CCTGCGCCGTCAGCACAAGCCATGCTTCACCACCAAGAGGC < 41bp 0.761808400886037 0.516456884541692 0.10379675 0.15997604 prediction 0.490703032688689 Functional Loss - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17974035 chr19:17974037 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_66965 0 0 0 0 1 RPL18A chr19:17973980 3'AG 17973980 Downstream 58bp
chr22 25581054 25581054 1 + C T UCEC 25581052 + 25581032 25581072 41 AGCCTGGGGTGCTGGGCAGTCGCGTGCTGCCTTCCAGCATG AGCCTGGGGTGCTGGGCAGTCGTGTGCTGCCTTCCAGCATG < 41bp 0.796899128658362 0.551558903728865 0.30895376 0.29072565 prediction 0.490680449858995 Functional Loss - KIAA1671 ENSG00000197077 CDS Human protein_coding chr22:25581052 chr22:25581054 synonymous SNV . 0 23 hm5C_associated_SNPs_66968 0 0 1 0 1 KIAA1671 chr22:25581086 5'GT 25581086 Upstream 33bp
chr11 71821211 71821211 1 - C A LUSC 71821213 - 71821193 71821233 41 TGAGGATAGTGAAGAGGACTCAGAGGATGATGAGGATATGC TGAGGATAGTGAAGAGGACTCATAGGATGATGAGGATATGC < 41bp 0.745340088737445 0.401965547164544 0.703365 0.13921273 prediction 0.490680177474889 Functional Loss - ANAPC15 ENSG00000110200 CDS Human protein_coding chr11:71821213 chr11:71821211 stopgain 0.999 1 23 hm5C_associated_SNPs_66969 0 0 1 0 2 ANAPC15 chr11:71821134 5'GT 71821134 Upstream 78bp
chr11 71821211 71821211 1 - C A LUSC 71821213 - 71821193 71821233 41 TGAGGATAGTGAAGAGGACTCAGAGGATGATGAGGATATGC TGAGGATAGTGAAGAGGACTCATAGGATGATGAGGATATGC < 41bp 0.745340088737445 0.401965547164544 0.703365 0.13921273 prediction 0.490680177474889 Functional Loss - ANAPC15 ENSG00000110200 CDS Human protein_coding chr11:71821213 chr11:71821211 stopgain 0.999 1 23 hm5C_associated_SNPs_66969 0 0 1 0 2 ANAPC15 chr11:71821271 3'AG 71821271 Downstream 61bp
chr22 41605899 41605899 1 + G A OV 41605896 + 41605876 41605916 41 CCCGCTGCATTTGCTCAGCCCTGGGACTCCTCGCTCCTTGG CCCGCTGCATTTGCTCAGCCCTGAGACTCCTCGCTCCTTGG < 41bp 0.745337493871388 0.492555330302378 0.7845321 0.2103082 prediction 0.490674987742776 Functional Loss - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41605896 chr22:41605899 nonsynonymous SNV 0.433 1 24 hm5C_associated_SNPs_66971 0 0 1 0 1 L3MBTL2 chr22:41605937 5'GT 41605937 Upstream 39bp
chr7 89912362 89912362 1 + A T CESC 89912358 + 89912338 89912378 41 TTTGTGAAAAGGGAACAATTCAGCAAATGATAGGTAAAATA TTTGTGAAAAGGGAACAATTCAGCTAATGATAGGTAAAATA < 41bp 0.745333679939705 0.41814313304495 0.20173106 0.07718718 prediction 0.490667359879411 Functional Loss - CFAP69 ENSG00000105792 CDS Human protein_coding chr7:89912358 chr7:89912362 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_66972 0 0 0 1 1 CFAP69 chr7:89912370 5'GT 89912370 Upstream 9bp
chr15 94910851 94910851 1 + C T rs369205876 94910849 + 94910829 94910869 41 TCTAGGTGTAAAGTGGATATCTCGGCACTCCCTCTGAAGCA TCTAGGTGTAAAGTGGATATCTTGGCACTCCCTCTGAAGCA < 41bp 0.781795786806826 0.53646620872607 0.4006299 0.20230815 prediction 0.490659156161511 Functional Loss - MCTP2 ENSG00000140563 CDS Human protein_coding chr15:94910849 chr15:94910851 nonsynonymous SNV 0.818 0 23 hm5C_associated_SNPs_66974 0 0 0 0 1 MCTP2 chr15:94910834 3'AG 94910834 Downstream 18bp
chr10 88416016 88416016 1 + G T SARC 88416013 + 88415993 88416033 41 GTGATCTTGCTGGTGGGACTCACGGGGATGCTGGGCAACCT GTGATCTTGCTGGTGGGACTCACTGGGATGCTGGGCAACCT < 41bp 0.919582213706062 0.674260466186614 0.8272408 0.16568354 prediction 0.490643495038896 Functional Loss - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88416013 chr10:88416016 synonymous SNV . 0 24 hm5C_associated_SNPs_66975 0 0 0 0 1 OPN4 chr10:88416057 5'GT 88416057 Upstream 42bp
chr11 65734948 65734948 1 + G T LUAD 65734946 + 65734926 65734966 41 GGCCTCCTTCCCTCAGACTGCGGGGACGGGGTCGCCGCCGA GGCCTCCTTCCCTCAGACTGCGTGGACGGGGTCGCCGCCGA < 41bp 0.898917557885276 0.653600464816104 0.90498817 0.48695478 prediction 0.490634186138343 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65734946 chr11:65734948 synonymous SNV . 0 23 hm5C_associated_SNPs_66976 0 0 1 0 1 SART1 chr11:65734942 3'AG 65734942 Downstream 7bp
chr13 102235597 102235597 1 + C T UCEC 102235595 + 102235575 102235615 41 TATGTGGTGAATGTACCTGTCACGATGTTGATCCGACTGGG TATGTGGTGAATGTACCTGTCATGATGTTGATCCGACTGGG < 41bp 0.835618122396663 0.59030779963206 0.29495132 0.38103077 prediction 0.490620645529206 Functional Loss - ITGBL1 ENSG00000198542 CDS Human protein_coding chr13:102235595 chr13:102235597 synonymous SNV . 0 23 hm5C_associated_SNPs_66979 0 0 0 0 1 ITGBL1 chr13:102235566 3'AG 102235566 Downstream 32bp
chr10 70863698 70863698 1 + C T rs146830092 70863696 + 70863676 70863716 41 TACTCTGGATCAGGCTTCGGCTCCGGCTCCGGCTCTGGATC TACTCTGGATCAGGCTTCGGCTTCGGCTCCGGCTCTGGATC < 41bp 0.801076324610715 0.555773776466923 0.20106578 0.14610064 prediction 0.490605096287584 Functional Loss - SRGN ENSG00000122862 CDS Human protein_coding chr10:70863696 chr10:70863698 nonsynonymous SNV 0.962 0 23 hm5C_associated_SNPs_66983 0 0 1 0 1 SRGN chr10:70863627 3'AG 70863627 Downstream 72bp
chr14 94512116 94512116 1 + C T UCEC 94512114 + 94512094 94512134 41 CATCCAGATCACGGCGTTGTCGCAGGCCCTGAGCATTGCCC CATCCAGATCACGGCGTTGTCGTAGGCCCTGAGCATTGCCC < 41bp 0.745297660814374 0.489279681627026 0.8890617 0.86735463 prediction 0.490595321628748 Functional Loss - OTUB2 ENSG00000089723 CDS Human protein_coding chr14:94512114 chr14:94512116 stopgain 0.551 1 23 hm5C_associated_SNPs_66985 0 0 0 0 1 OTUB2 chr14:94512062 3'AG 94512062 Downstream 55bp
chr19 36134268 36134268 1 + G T PAAD 36134265 + 36134245 36134285 41 GGAGCGGCGCCTCGCAGACCCTGGGCCCCGCCCCTCTCGGC GGAGCGGCGCCTCGCAGACCCTGTGCCCCGCCCCTCTCGGC < 41bp 0.918449534210859 0.673167354984322 0.8976029 0.26970726 prediction 0.490564358453075 Functional Loss - ETV2 ENSG00000105672 CDS Human protein_coding chr19:36134265 chr19:36134268 nonsynonymous SNV 0.003 3 24 hm5C_associated_SNPs_66988 0 0 0 0 1 ETV2 chr19:36134176 3'AG 36134176 Downstream 93bp
chr1 151263006 151263006 1 + G A UCEC 151263003 + 151262983 151263023 41 GCAGCTTGGGGCCCAGTCCCCTGGCCGGGGGACCACCTTGG GCAGCTTGGGGCCCAGTCCCCTGACCGGGGGACCACCTTGG < 41bp 0.754811266682676 0.509538379362186 0.7600516 0.34274656 prediction 0.490545774640981 Functional Loss - ZNF687 ENSG00000143373 CDS Human protein_coding chr1:151263003 chr1:151263006 stopgain 0.616 0 24 hm5C_associated_SNPs_66992 0 0 1 0 2 ZNF687 chr1:151262908 3'AG 151262908 Downstream 99bp
chr1 151263006 151263006 1 + G A UCEC 151263003 + 151262983 151263023 41 GCAGCTTGGGGCCCAGTCCCCTGGCCGGGGGACCACCTTGG GCAGCTTGGGGCCCAGTCCCCTGACCGGGGGACCACCTTGG < 41bp 0.754811266682676 0.509538379362186 0.7600516 0.34274656 prediction 0.490545774640981 Functional Loss - ZNF687 ENSG00000143373 CDS Human protein_coding chr1:151263003 chr1:151263006 stopgain 0.616 0 24 hm5C_associated_SNPs_66992 0 0 1 0 2 ZNF687 chr1:151263049 5'GT 151263049 Upstream 44bp
chr1 17657534 17657534 1 + G A rs11203366 17657531 + 17657511 17657551 41 GGGTGGTCGTGGATATTGCCCACGGCCCTCCAGCCAAGAAG GGGTGGTCGTGGATATTGCCCACAGCCCTCCAGCCAAGAAG < 41bp 0.745259853322675 0.486788075283759 0.14530516 0.04523471 prediction 0.490519706645349 Functional Loss - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17657531 chr1:17657534 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_66994 0 0 0 0 1 PADI4 chr1:17657464 3'AG 17657464 Downstream 71bp
chr21 42769566 42769566 1 + C T UCEC 42769564 + 42769544 42769584 41 CTCCTGGAGGAGGGGTCAGCCACGGTTCCCCGACTGGCAGA CTCCTGGAGGAGGGGTCAGCCATGGTTCCCCGACTGGCAGA < 41bp 0.759317843767772 0.514059241210453 0.8474909 0.74796236 prediction 0.490517205114637 Functional Loss - MX2 ENSG00000183486 CDS Human protein_coding chr21:42769564 chr21:42769566 nonsynonymous SNV 0.885 4 23 hm5C_associated_SNPs_66995 0 0 0 0 1 MX2 chr21:42769618 5'GT 42769618 Upstream 53bp
chr2 27169819 27169819 1 + C T CESC 27169817 + 27169797 27169837 41 TGTTCCAAAGCGAGCTTCAGCTCGGATCCTCGCTCCTCCCG TGTTCCAAAGCGAGCTTCAGCTTGGATCCTCGCTCCTCCCG < 41bp 0.772482792663408 0.527226541638023 0.3483808 0.29794574 prediction 0.490512502050769 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27169817 chr2:27169819 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_66996 0 0 0 0 1 DPYSL5 chr2:27169778 3'AG 27169778 Downstream 42bp
chr4 79522717 79522717 1 + T C rs202100391 79522716 + 79522696 79522736 41 GCCGAAAGACTGCATCGAGCCTTGAAGGTTGGTCTGGAAAG GCCGAAAGACTGCATCGAGCCCTGAAGGTTGGTCTGGAAAG < 41bp 0.745254545377786 0.494386182817625 0.03897348 0.023541987 prediction 0.490509090755573 Functional Loss - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79522716 chr4:79522717 synonymous SNV . 0 22 hm5C_associated_SNPs_66998 0 0 0 0 2 ANXA3 chr4:79522664 3'AG 79522664 Downstream 54bp
chr4 79522717 79522717 1 + T C rs202100391 79522716 + 79522696 79522736 41 GCCGAAAGACTGCATCGAGCCTTGAAGGTTGGTCTGGAAAG GCCGAAAGACTGCATCGAGCCCTGAAGGTTGGTCTGGAAAG < 41bp 0.745254545377786 0.494386182817625 0.03897348 0.023541987 prediction 0.490509090755573 Functional Loss - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79522716 chr4:79522717 synonymous SNV . 0 22 hm5C_associated_SNPs_66998 0 0 0 0 2 ANXA3 chr4:79522722 5'GT 79522722 Upstream 6bp
chr7 94039079 94039079 1 + C T ESCA 94039077 + 94039057 94039097 41 CTCCCGGCCTCCCTGGACCCCGCGGTATTCCTGGCCCTGTT CTCCCGGCCTCCCTGGACCCCGTGGTATTCCTGGCCCTGTT < 41bp 0.782774636148657 0.537552476358898 0.8676927 0.6579903 prediction 0.490444319579518 Functional Loss - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94039077 chr7:94039079 synonymous SNV . 0 23 hm5C_associated_SNPs_67002 0 0 0 0 2 COL1A2 chr7:94039035 3'AG 94039035 Downstream 45bp
chr7 94039079 94039079 1 + C T ESCA 94039077 + 94039057 94039097 41 CTCCCGGCCTCCCTGGACCCCGCGGTATTCCTGGCCCTGTT CTCCCGGCCTCCCTGGACCCCGTGGTATTCCTGGCCCTGTT < 41bp 0.782774636148657 0.537552476358898 0.8676927 0.6579903 prediction 0.490444319579518 Functional Loss - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94039077 chr7:94039079 synonymous SNV . 0 23 hm5C_associated_SNPs_67002 0 0 0 0 2 COL1A2 chr7:94039133 5'GT 94039133 Upstream 55bp
chr13 34405483 34405483 1 + T C COAD 34405482 + 34405462 34405502 41 TGCTATTGTCAGTCAGCAAACTCCACAAAGGTACCAGTATA TGCTATTGTCAGTCAGCAAACCCCACAAAGGTACCAGTATA < 41bp 0.745218852756164 0.478660490428601 0.88940454 0.0644958 prediction 0.490437705512328 Functional Loss - RFC3 ENSG00000133119 CDS Human protein_coding chr13:34405482 chr13:34405483 synonymous SNV . 0 22 hm5C_associated_SNPs_67003 0 0 1 0 2 RFC3 chr13:34405393 3'AG 34405393 Downstream 91bp
chr13 34405483 34405483 1 + T C COAD 34405482 + 34405462 34405502 41 TGCTATTGTCAGTCAGCAAACTCCACAAAGGTACCAGTATA TGCTATTGTCAGTCAGCAAACCCCACAAAGGTACCAGTATA < 41bp 0.745218852756164 0.478660490428601 0.88940454 0.0644958 prediction 0.490437705512328 Functional Loss - RFC3 ENSG00000133119 CDS Human protein_coding chr13:34405482 chr13:34405483 synonymous SNV . 0 22 hm5C_associated_SNPs_67003 0 0 1 0 2 RFC3 chr13:34405491 5'GT 34405491 Upstream 9bp
chr3 157155332 157155332 1 + C T BLCA 157155330 + 157155310 157155350 41 TGCGCCTGCGGTCAGGAGCACTCGGAATGGGACAAGCTCTT TGCGCCTGCGGTCAGGAGCACTTGGAATGGGACAAGCTCTT < 41bp 0.745217358856229 0.479568877574829 0.1998922 0.09295225 prediction 0.490434717712457 Functional Loss - PTX3 ENSG00000163661 CDS Human protein_coding chr3:157155330 chr3:157155332 nonsynonymous SNV 0.012 1 23 hm5C_associated_SNPs_67004 0 0 0 0 1 PTX3 chr3:157155302 3'AG 157155302 Downstream 31bp
chr22 17528285 17528285 1 + G T LUAD 17528283 + 17528263 17528303 41 AGGACCAGCTGACTAAGGAGCTGCAGCAGCATGTAAAGTCA AGGACCAGCTGACTAAGGAGCTTCAGCAGCATGTAAAGTCA < 41bp 0.745217236127907 0.411000479240044 0.16994414 0.117346615 prediction 0.490434472255814 Functional Loss - CECR7 ENSG00000237438 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:17528283 chr22:17528285 . . 0 23 hm5C_associated_SNPs_67005 0 0 1 0 2 CECR7 chr22:17528214 3'AG 17528214 Downstream 72bp
chr22 17528285 17528285 1 + G T LUAD 17528283 + 17528263 17528303 41 AGGACCAGCTGACTAAGGAGCTGCAGCAGCATGTAAAGTCA AGGACCAGCTGACTAAGGAGCTTCAGCAGCATGTAAAGTCA < 41bp 0.745217236127907 0.411000479240044 0.16994414 0.117346615 prediction 0.490434472255814 Functional Loss - CECR7 ENSG00000237438 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:17528283 chr22:17528285 . . 0 23 hm5C_associated_SNPs_67005 0 0 1 0 2 CECR7 chr22:17528316 5'GT 17528316 Upstream 32bp
chrX 1531703 1531703 1 + G T UCEC 1531701 + 1531681 1531721 41 CAGTCATGCAGGATCCGGCACAGGACGTACAGCTCAGCGCT CAGTCATGCAGGATCCGGCACATGACGTACAGCTCAGCGCT < 41bp 0.745214806157458 0.384866914519514 0.71473825 0.37449837 prediction 0.490429612314916 Functional Loss - ASMTL ENSG00000169093 CDS Human protein_coding chrX:1531701 chrX:1531703 nonsynonymous SNV 0.004 2 23 hm5C_associated_SNPs_67008 0 0 1 0 2 ASMTL chrX:1531636 3'AG 1531636 Downstream 68bp
chrX 1531703 1531703 1 + G T UCEC 1531701 + 1531681 1531721 41 CAGTCATGCAGGATCCGGCACAGGACGTACAGCTCAGCGCT CAGTCATGCAGGATCCGGCACATGACGTACAGCTCAGCGCT < 41bp 0.745214806157458 0.384866914519514 0.71473825 0.37449837 prediction 0.490429612314916 Functional Loss - ASMTL ENSG00000169093 CDS Human antisense chrX:1531701 chrX:1531703 nonsynonymous SNV 0.004 2 23 hm5C_associated_SNPs_67008 0 0 1 0 2 ASMTL-AS1 chrX:1531781 5'GT 1531781 Upstream 79bp
chr15 48429077 48429077 1 + G T READ 48429074 + 48429054 48429094 41 ACCATTCATTCGTCGGCAATCAAGAACTGATAGTGGAATAT ACCATTCATTCGTCGGCAATCAATAACTGATAGTGGAATAT < 41bp 0.745210335566983 0.385691231530389 0.39233023 0.11978847 prediction 0.490420671133966 Functional Loss - SLC24A5 ENSG00000188467 CDS Human protein_coding chr15:48429074 chr15:48429077 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_67011 0 0 0 0 1 SLC24A5 chr15:48429160 5'GT 48429160 Upstream 84bp
chrX 23701803 23701803 1 + G T LIHC 23701801 + 23701781 23701821 41 CTTTTAGTCTGCCCTGCTGGCTGGAAACCTGGTAGTGAAAC CTTTTAGTCTGCCCTGCTGGCTTGAAACCTGGTAGTGAAAC < 41bp 0.745209072803408 0.415555397812438 0.29727554 0.10871339 prediction 0.490418145606816 Functional Loss - PRDX4 ENSG00000123131 CDS Human protein_coding chrX:23701801 chrX:23701803 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_67014 0 0 1 0 2 PRDX4 chrX:23701788 3'AG 23701788 Downstream 16bp
chrX 23701803 23701803 1 + G T LIHC 23701801 + 23701781 23701821 41 CTTTTAGTCTGCCCTGCTGGCTGGAAACCTGGTAGTGAAAC CTTTTAGTCTGCCCTGCTGGCTTGAAACCTGGTAGTGAAAC < 41bp 0.745209072803408 0.415555397812438 0.29727554 0.10871339 prediction 0.490418145606816 Functional Loss - PRDX4 ENSG00000123131 CDS Human protein_coding chrX:23701801 chrX:23701803 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_67014 0 0 1 0 2 PRDX4 chrX:23701822 5'GT 23701822 Upstream 20bp
chr6 25983486 25983486 1 + G T UCEC 25983484 + 25983464 25983504 41 GTGGATACACCCAGGAGAATCAGGACACATCTTCCAGGAGA GTGGATACACCCAGGAGAATCATGACACATCTTCCAGGAGA < 41bp 0.876744139639309 0.631549604191086 0.9184128 0.3825232 prediction 0.490389070896447 Functional Loss - TRIM38 ENSG00000112343 CDS Human protein_coding chr6:25983484 chr6:25983486 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_67020 0 0 1 0 1 TRIM38 chr6:25983392 3'AG 25983392 Downstream 95bp
chr11 44636870 44636870 1 + A T STAD 44636866 + 44636846 44636886 41 GTGACTGAGCTCATTCGAGACTACAACAGCAGTCGCGAGGA GTGACTGAGCTCATTCGAGACTACTACAGCAGTCGCGAGGA < 41bp 0.745191093940591 0.400539199192351 0.8880024 0.23923424 prediction 0.490382187881182 Functional Loss - CD82 ENSG00000085117 CDS Human protein_coding chr11:44636866 chr11:44636870 nonsynonymous SNV 0.022 1 25 hm5C_associated_SNPs_67021 0 0 1 0 2 CD82 chr11:44636822 3'AG 44636822 Downstream 49bp
chr11 44636870 44636870 1 + A T STAD 44636866 + 44636846 44636886 41 GTGACTGAGCTCATTCGAGACTACAACAGCAGTCGCGAGGA GTGACTGAGCTCATTCGAGACTACTACAGCAGTCGCGAGGA < 41bp 0.745191093940591 0.400539199192351 0.8880024 0.23923424 prediction 0.490382187881182 Functional Loss - CD82 ENSG00000085117 CDS Human protein_coding chr11:44636866 chr11:44636870 nonsynonymous SNV 0.022 1 25 hm5C_associated_SNPs_67021 0 0 1 0 2 CD82 chr11:44636923 5'GT 44636923 Upstream 54bp
chr10 115489143 115489143 1 + C T UCEC 115489141 + 115489121 115489161 41 TCTGCTCCATCCTGGAGGAGCACGGAAAAGACCTGGAAATC TCTGCTCCATCCTGGAGGAGCATGGAAAAGACCTGGAAATC < 41bp 0.771492354176248 0.526303592424694 0.5950519 0.5289553 prediction 0.490377523503109 Functional Loss - CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489141 chr10:115489143 nonsynonymous SNV 0.802 0 23 hm5C_associated_SNPs_67023 0 0 0 0 1 CASP7 chr10:115489070 3'AG 115489070 Downstream 74bp
chr12 20874807 20874807 1 + G T BLCA 20874804 + 20874784 20874824 41 GTGGCTTGGCTATCTAATAGCAGGAATCATAAGTCTTCTTG GTGGCTTGGCTATCTAATAGCAGTAATCATAAGTCTTCTTG < 41bp 0.91622523264331 0.671043628018714 0.68864584 0.17736924 prediction 0.490363209249192 Functional Loss - SLCO1C1 ENSG00000139155 CDS Human protein_coding chr12:20874804 chr12:20874807 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_67026 0 0 0 0 1 SLCO1C1 chr12:20874738 3'AG 20874738 Downstream 70bp
chr5 179036423 179036423 1 + G T COAD 179036421 + 179036401 179036441 41 ATCTTCTGCAACACCTGCTCCAGCAACGAGCTGGCCCTGCC ATCTTCTGCAACACCTGCTCCATCAACGAGCTGGCCCTGCC < 41bp 0.745177619430943 0.413740010906728 0.35615912 0.065692335 prediction 0.490355238861887 Functional Loss - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179036421 chr5:179036423 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_67027 0 0 1 0 1 RUFY1 chr5:179036377 3'AG 179036377 Downstream 47bp
chr3 44816791 44816791 1 + T C KIRC 44816790 + 44816770 44816810 41 TTTTGTGCGAATTCGTCCTCCTGCAGAAAGATCTGGGTCAG TTTTGTGCGAATTCGTCCTCCCGCAGAAAGATCTGGGTCAG < 41bp 0.776469660218182 0.531296873883907 0.08932832 0.06302917 prediction 0.490345572668551 Functional Loss - KIF15 ENSG00000163808 CDS Human protein_coding chr3:44816790 chr3:44816791 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_67028 0 0 1 0 1 KIF15 chr3:44816746 3'AG 44816746 Downstream 46bp
chr16 19483505 19483505 1 + T C UCEC 19483504 + 19483484 19483524 41 CATGGTAGCCTGGGTTGTCTCTACAGGAGTGGCCATAGCCT CATGGTAGCCTGGGTTGTCTCCACAGGAGTGGCCATAGCCT < 41bp 0.785537963599147 0.54036895730063 0.92214024 0.6800126 prediction 0.490338012597035 Functional Loss - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19483504 chr16:19483505 synonymous SNV . 0 22 hm5C_associated_SNPs_67030 0 0 0 0 2 TMC5 chr16:19483410 3'AG 19483410 Downstream 96bp
chr16 19483505 19483505 1 + T C UCEC 19483504 + 19483484 19483524 41 CATGGTAGCCTGGGTTGTCTCTACAGGAGTGGCCATAGCCT CATGGTAGCCTGGGTTGTCTCCACAGGAGTGGCCATAGCCT < 41bp 0.785537963599147 0.54036895730063 0.92214024 0.6800126 prediction 0.490338012597035 Functional Loss - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19483504 chr16:19483505 synonymous SNV . 0 22 hm5C_associated_SNPs_67030 0 0 0 0 2 TMC5 chr16:19483565 5'GT 19483565 Upstream 61bp
chr19 11094864 11094864 1 + C T BLCA 11094862 + 11094842 11094882 41 CCCACCCCTGGGCGGAACTCCTCGGCCAGGTCCTTCCCCGG CCCACCCCTGGGCGGAACTCCTTGGCCAGGTCCTTCCCCGG < 41bp 0.772131215763281 0.526969970922759 0.88524437 0.4778285 prediction 0.490322489681043 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11094862 chr19:11094864 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_67034 0 0 1 0 1 SMARCA4 chr19:11094797 3'AG 11094797 Downstream 68bp
chr19 50303321 50303321 1 + G C SARC 50303320 + 50303300 50303340 41 ATCCGCATTGCGGGCGACTACGTGAGTGAGGAGGTGTGGTA ATCCGCATTGCGGGCGACTACCTGAGTGAGGAGGTGTGGTA < 41bp 0.861016503939834 0.615856514273067 0.72057736 0.54996455 prediction 0.490319979333535 Functional Loss - AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50303320 chr19:50303321 nonsynonymous SNV 0.901 4 22 hm5C_associated_SNPs_67035 0 0 1 0 2 AP2A1 chr19:50303225 3'AG 50303225 Downstream 97bp
chr19 50303321 50303321 1 + G C SARC 50303320 + 50303300 50303340 41 ATCCGCATTGCGGGCGACTACGTGAGTGAGGAGGTGTGGTA ATCCGCATTGCGGGCGACTACCTGAGTGAGGAGGTGTGGTA < 41bp 0.861016503939834 0.615856514273067 0.72057736 0.54996455 prediction 0.490319979333535 Functional Loss - AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50303320 chr19:50303321 nonsynonymous SNV 0.901 4 22 hm5C_associated_SNPs_67035 0 0 1 0 2 AP2A1 chr19:50303407 5'GT 50303407 Upstream 87bp
chr2 234678193 234678193 1 + G T UCEC 234678191 + 234678171 234678211 41 CTTTAGAAAGAAGCAGCAGTCAGGAAGACAGATGTGAAGAG CTTTAGAAAGAAGCAGCAGTCATGAAGACAGATGTGAAGAG < 41bp 0.865292971815748 0.620137950937866 0.8861804 0.38906366 prediction 0.490310041755763 Functional Loss - UGT1A1;UGT1A10;UGT1A3;UGT1A4;UGT1A5;UGT1A6;UGT1A7;UGT1A8;UGT1A9 ENSG00000167165;ENSG00000241635;ENSG00000242515;ENSG00000244474 CDS Human other chr2:234678191 chr2:234678193 stopgain 0.014 0 23 hm5C_associated_SNPs_67036 0 0 0 0 1 UGT1A1;UGT1A10;UGT1A3;UGT1A4;UGT1A5;UGT1A6;UGT1A7;UGT1A8;UGT1A9 chr2:234678177 3'AG 234678177 Downstream 17bp
chr17 60464717 60464717 1 + G T STAD 60464715 + 60464695 60464735 41 CCTCAGGGATAGAGACTTACCAGGATCTCTTCAATGCCAAT CCTCAGGGATAGAGACTTACCATGATCTCTTCAATGCCAAT < 41bp 0.880138271820078 0.63498630302932 0.27975327 0.067890495 prediction 0.490303937581515 Functional Loss - EFCAB3 ENSG00000172421 CDS Human protein_coding chr17:60464715 chr17:60464717 stopgain 0.190 0 23 hm5C_associated_SNPs_67037 0 0 0 0 2 EFCAB3 chr17:60464701 3'AG 60464701 Downstream 17bp
chr17 60464717 60464717 1 + G T STAD 60464715 + 60464695 60464735 41 CCTCAGGGATAGAGACTTACCAGGATCTCTTCAATGCCAAT CCTCAGGGATAGAGACTTACCATGATCTCTTCAATGCCAAT < 41bp 0.880138271820078 0.63498630302932 0.27975327 0.067890495 prediction 0.490303937581515 Functional Loss - EFCAB3 ENSG00000172421 CDS Human protein_coding chr17:60464715 chr17:60464717 stopgain 0.190 0 23 hm5C_associated_SNPs_67037 0 0 0 0 2 EFCAB3 chr17:60464777 5'GT 60464777 Upstream 61bp
chr6 43413612 43413612 1 + A C LUSC 43413608 + 43413588 43413628 41 CCTGGGCAGCCTCACCCTGTCTCCACTGTATAGCCATCTGG CCTGGGCAGCCTCACCCTGTCTCCCCTGTATAGCCATCTGG < 41bp 0.745135072254217 0.309921429325226 0.92288554 0.0147458315 prediction 0.490270144508435 Functional Loss - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43413608 chr6:43413612 synonymous SNV . 0 25 hm5C_associated_SNPs_67039 0 0 0 0 1 ABCC10 chr6:43413680 5'GT 43413680 Upstream 69bp
chr6 44387305 44387305 1 + T C rs11571982 44387304 + 44387284 44387324 41 ACAGCGACAAGTTGTACAGACTCCAAACACAGTTCTCTCTA ACAGCGACAAGTTGTACAGACCCCAAACACAGTTCTCTCTA < 41bp 0.786733808534211 0.541600598545593 0.97591877 0.26596838 prediction 0.490266419977236 Functional Loss - CDC5L ENSG00000096401 CDS Human protein_coding chr6:44387304 chr6:44387305 synonymous SNV . 0 22 hm5C_associated_SNPs_67040 0 0 1 0 1 CDC5L chr6:44387334 5'GT 44387334 Upstream 30bp
chr12 57861208 57861208 1 + C T COAD 57861206 + 57861186 57861226 41 AGAAGCCATACATGTGTGAGCACGAGGGCTGCAGTAAAGCC AGAAGCCATACATGTGTGAGCATGAGGGCTGCAGTAAAGCC < 41bp 0.745124491956099 0.470330528274677 0.50272405 0.53978246 prediction 0.490248983912197 Functional Loss - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57861206 chr12:57861208 synonymous SNV . 0 23 hm5C_associated_SNPs_67042 0 0 0 0 2 GLI1 chr12:57861116 3'AG 57861116 Downstream 93bp
chr12 57861208 57861208 1 + C T COAD 57861206 + 57861186 57861226 41 AGAAGCCATACATGTGTGAGCACGAGGGCTGCAGTAAAGCC AGAAGCCATACATGTGTGAGCATGAGGGCTGCAGTAAAGCC < 41bp 0.745124491956099 0.470330528274677 0.50272405 0.53978246 prediction 0.490248983912197 Functional Loss - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57861206 chr12:57861208 synonymous SNV . 0 23 hm5C_associated_SNPs_67042 0 0 0 0 2 GLI1 chr12:57861280 5'GT 57861280 Upstream 73bp
chr17 7605013 7605013 1 + G A SKCM 7605010 + 7604990 7605030 41 GCCCATTCGCTCTGCTTCTCCCCGGATGGCTCCCAGCTCTT GCCCATTCGCTCTGCTTCTCCCCAGATGGCTCCCAGCTCTT < 41bp 0.749497319023297 0.50437639973328 0.40597692 0.17601094 prediction 0.490241838580032 Functional Loss - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7605010 chr17:7605013 synonymous SNV . 0 24 hm5C_associated_SNPs_67043 0 0 1 0 2 WRAP53 chr17:7604975 3'AG 7604975 Downstream 39bp
chr17 7605013 7605013 1 + G A SKCM 7605010 + 7604990 7605030 41 GCCCATTCGCTCTGCTTCTCCCCGGATGGCTCCCAGCTCTT GCCCATTCGCTCTGCTTCTCCCCAGATGGCTCCCAGCTCTT < 41bp 0.749497319023297 0.50437639973328 0.40597692 0.17601094 prediction 0.490241838580032 Functional Loss - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7605010 chr17:7605013 synonymous SNV . 0 24 hm5C_associated_SNPs_67043 0 0 1 0 2 WRAP53 chr17:7605107 5'GT 7605107 Upstream 95bp
chr22 45939306 45939306 1 + C T rs375160844 45939304 + 45939284 45939324 41 TCAACGAGTGCCAGCGCTACCCCGGGCGCCTGTGTGGCCAC TCAACGAGTGCCAGCGCTACCCTGGGCGCCTGTGTGGCCAC < 41bp 0.806737813225631 0.561623770432747 0.39780164 0.21857122 prediction 0.490228085585769 Functional Loss - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45939304 chr22:45939306 synonymous SNV . 0 23 hm5C_associated_SNPs_67044 0 0 1 0 1 FBLN1 chr22:45939281 3'AG 45939281 Downstream 26bp
chr19 7591763 7591763 1 + C T UCEC 7591761 + 7591741 7591781 41 AGCGGTACTACCACCGAGGCCACGTGGACCCGGCCAACGAC AGCGGTACTACCACCGAGGCCATGTGGACCCGGCCAACGAC < 41bp 0.745113034476517 0.481580960761432 0.21781713 0.17108393 prediction 0.490226068953035 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7591761 chr19:7591763 synonymous SNV . 0 23 hm5C_associated_SNPs_67045 0 0 1 0 1 MCOLN1 chr19:7591812 5'GT 7591812 Upstream 50bp
chr19 37966852 37966852 1 + C T BLCA 37966850 + 37966830 37966870 41 ATGGGATTGTCTGGATTCTTCTCAAAGACATCTGTACAGTA ATGGGATTGTCTGGATTCTTCTTAAAGACATCTGTACAGTA < 41bp 0.745103770834947 0.453576304370508 0.19324955 0.10514951 prediction 0.490207541669894 Functional Loss - ZNF570 ENSG00000171827 CDS Human protein_coding chr19:37966850 chr19:37966852 stopgain 0.015 0 23 hm5C_associated_SNPs_67046 0 0 1 0 2 ZNF570 chr19:37966783 3'AG 37966783 Downstream 70bp
chr19 37966852 37966852 1 + C T BLCA 37966850 + 37966830 37966870 41 ATGGGATTGTCTGGATTCTTCTCAAAGACATCTGTACAGTA ATGGGATTGTCTGGATTCTTCTTAAAGACATCTGTACAGTA < 41bp 0.745103770834947 0.453576304370508 0.19324955 0.10514951 prediction 0.490207541669894 Functional Loss - ZNF570 ENSG00000171827 CDS Human protein_coding chr19:37966850 chr19:37966852 stopgain 0.015 0 23 hm5C_associated_SNPs_67046 0 0 1 0 2 ZNF570 chr19:37966909 5'GT 37966909 Upstream 58bp
chr19 4224483 4224483 1 + T C LIHC 4224482 + 4224462 4224502 41 AGATTCTGCAGATGCAGAGACTCCAGGCTCAGGGCCGCTGA AGATTCTGCAGATGCAGAGACCCCAGGCTCAGGGCCGCTGA < 41bp 0.785934637673976 0.540834100706365 0.91465724 0.16008067 prediction 0.490201073935222 Functional Loss - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4224482 chr19:4224483 nonsynonymous SNV 0.990 3 22 hm5C_associated_SNPs_67047 0 0 1 0 1 ANKRD24 chr19:4224425 3'AG 4224425 Downstream 59bp
chr6 10902994 10902994 1 + A T STAD 10902990 + 10902970 10903010 41 CTGTAAATCATTTGCTTCAACAGGAGGTGAGTTGCAAGTAA CTGTAAATCATTTGCTTCAACAGGTGGTGAGTTGCAAGTAA < 41bp 0.850397850054527 0.605299802799292 0.83336186 0.8435934 prediction 0.490196094510471 Functional Loss - SYCP2L ENSG00000153157 CDS Human protein_coding chr6:10902990 chr6:10902994 nonsynonymous SNV 0.590 4 25 hm5C_associated_SNPs_67048 0 0 1 0 2 SYCP2L chr6:10902910 3'AG 10902910 Downstream 85bp
chr6 10902994 10902994 1 + A T STAD 10902990 + 10902970 10903010 41 CTGTAAATCATTTGCTTCAACAGGAGGTGAGTTGCAAGTAA CTGTAAATCATTTGCTTCAACAGGTGGTGAGTTGCAAGTAA < 41bp 0.850397850054527 0.605299802799292 0.83336186 0.8435934 prediction 0.490196094510471 Functional Loss - SYCP2L ENSG00000153157 CDS Human protein_coding chr6:10902990 chr6:10902994 nonsynonymous SNV 0.590 4 25 hm5C_associated_SNPs_67048 0 0 1 0 2 SYCP2L chr6:10902995 5'GT 10902995 Upstream 2bp
chr3 122399911 122399911 1 + G T UCEC 122399909 + 122399889 122399929 41 CTTCCTGGTGTTCTTCTACCCGGAGGACGGTGAGGGGCGCG CTTCCTGGTGTTCTTCTACCCGTAGGACGGTGAGGGGCGCG < 41bp 0.882272638508842 0.637175605933874 0.84730303 0.3175826 prediction 0.490194065149937 Functional Loss - PARP14 ENSG00000173193 CDS Human protein_coding chr3:122399909 chr3:122399911 stopgain 0.788 0 23 hm5C_associated_SNPs_67049 0 0 1 0 1 PARP14 chr3:122399917 5'GT 122399917 Upstream 7bp
chr1 227174193 227174193 1 + G T BLCA 227174190 + 227174170 227174210 41 ACTTGGATGCCATCCTCATCCTGGGGGAGGCCTTCGCCTCT ACTTGGATGCCATCCTCATCCTGTGGGAGGCCTTCGCCTCT < 41bp 0.914294569379657 0.669207453079823 0.7784615 0.19701615 prediction 0.490174232599668 Functional Loss - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227174190 chr1:227174193 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_67050 0 0 1 0 1 COQ8A chr1:227174154 3'AG 227174154 Downstream 40bp
chr10 102738692 102738692 1 + G C BLCA 102738688 + 102738668 102738708 41 GACAAGGTGTACTACTTCTTCACGGAGCGTGCCACTGAGGA GACAAGGTGTACTACTTCTTCACGCAGCGTGCCACTGAGGA < 41bp 0.745077246732068 0.450152688257152 0.22150815 0.18837115 prediction 0.490154493464135 Functional Loss - SEMA4G ENSG00000095539 CDS Human protein_coding chr10:102738688 chr10:102738692 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_67054 0 0 1 0 2 SEMA4G chr10:102738606 3'AG 102738606 Downstream 87bp
chr10 102738692 102738692 1 + G C BLCA 102738688 + 102738668 102738708 41 GACAAGGTGTACTACTTCTTCACGGAGCGTGCCACTGAGGA GACAAGGTGTACTACTTCTTCACGCAGCGTGCCACTGAGGA < 41bp 0.745077246732068 0.450152688257152 0.22150815 0.18837115 prediction 0.490154493464135 Functional Loss - SEMA4G ENSG00000095539 CDS Human protein_coding chr10:102738688 chr10:102738692 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_67054 0 0 1 0 2 SEMA4G chr10:102738775 5'GT 102738775 Upstream 84bp
chr20 19977425 19977425 1 + T C COAD 19977424 + 19977404 19977444 41 GCTCAGAAACCAGAGACACCCTGAGGCAGTGGCACAAACGG GCTCAGAAACCAGAGACACCCCGAGGCAGTGGCACAAACGG < 41bp 0.756869728903501 0.511801397884756 0.53257054 0.5832286 prediction 0.490136662037489 Functional Loss - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19977424 chr20:19977425 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_67055 0 0 0 0 1 RIN2 chr20:19977486 5'GT 19977486 Upstream 62bp
chr1 71532472 71532472 1 - G A UCEC 71532474 - 71532454 71532494 41 CAAAAAAAGACGAACAAGATCACGGTCACCCGAAAGGTTTG CAAAAAAAGACGAACAAGATCATGGTCACCCGAAAGGTTTG < 41bp 0.77925412831383 0.534188324641247 0.36975107 0.37523222 prediction 0.490131607345166 Functional Loss - ZRANB2 ENSG00000132485 CDS Human protein_coding chr1:71532474 chr1:71532472 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_67058 0 0 1 0 1 ZRANB2 chr1:71532459 5'GT 71532459 Upstream 14bp
chr19 58846556 58846556 1 + G A rs149157552 58846553 + 58846533 58846573 41 TGCTGGTGGAGGATCTGACTCAGGTGCTGGACAAGAGAGGT TGCTGGTGGAGGATCTGACTCAGATGCTGGACAAGAGAGGT < 41bp 0.752883072914502 0.507823012187348 0.8607603 0.7217424 prediction 0.490120121454309 Functional Loss - ZSCAN22;ZSCAN22 ENSG00000182318 CDS Human protein_coding chr19:58846553 chr19:58846556 nonsynonymous SNV 0.051 0 24 hm5C_associated_SNPs_67061 0 0 1 0 1 ZSCAN22 chr19:58846571 5'GT 58846571 Upstream 16bp
chr19 49438307 49438307 1 + G T UCEC 49438305 + 49438285 49438325 41 GCCGTGCGAAGGAGTTTGCACAGAAACACGACATCCCCAAG GCCGTGCGAAGGAGTTTGCACATAAACACGACATCCCCAAG < 41bp 0.897370828683779 0.652316596794569 0.53456306 0.2554068 prediction 0.49010846377842 Functional Loss - DHDH ENSG00000104808 CDS Human protein_coding chr19:49438305 chr19:49438307 nonsynonymous SNV 0.056 0 23 hm5C_associated_SNPs_67062 0 0 0 0 2 DHDH chr19:49438257 3'AG 49438257 Downstream 51bp
chr19 49438307 49438307 1 + G T UCEC 49438305 + 49438285 49438325 41 GCCGTGCGAAGGAGTTTGCACAGAAACACGACATCCCCAAG GCCGTGCGAAGGAGTTTGCACATAAACACGACATCCCCAAG < 41bp 0.897370828683779 0.652316596794569 0.53456306 0.2554068 prediction 0.49010846377842 Functional Loss - DHDH ENSG00000104808 CDS Human protein_coding chr19:49438305 chr19:49438307 nonsynonymous SNV 0.056 0 23 hm5C_associated_SNPs_67062 0 0 0 0 2 DHDH chr19:49438368 5'GT 49438368 Upstream 62bp
chr19 7509252 7509252 1 + G A COAD 7509249 + 7509229 7509269 41 GACGCACAGCCACTTCCTCGCTCGGCTCAAGGAGCGCCGCC GACGCACAGCCACTTCCTCGCTCAGCTCAAGGAGCGCCGCC < 41bp 0.752308729240563 0.507257709889872 0.3209756 0.2334733 prediction 0.490102038701382 Functional Loss - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7509249 chr19:7509252 nonsynonymous SNV 0.166 0 24 hm5C_associated_SNPs_67064 0 0 1 0 1 ARHGEF18 chr19:7509340 5'GT 7509340 Upstream 89bp
chr1 16359716 16359716 1 + C T STAD 16359714 + 16359694 16359734 41 TCAGTCCCTCTTCGTGACATCGCGGGGCAGAGCTGTGGGCT TCAGTCCCTCTTCGTGACATCGTGGGGCAGAGCTGTGGGCT < 41bp 0.777957567035552 0.532914556276755 0.9004105 0.7866091 prediction 0.490086021517594 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16359714 chr1:16359716 nonsynonymous SNV 0.098 1 23 hm5C_associated_SNPs_67068 0 0 0 0 2 CLCNKA chr1:16359665 3'AG 16359665 Downstream 52bp
chr1 16359716 16359716 1 + C T STAD 16359714 + 16359694 16359734 41 TCAGTCCCTCTTCGTGACATCGCGGGGCAGAGCTGTGGGCT TCAGTCCCTCTTCGTGACATCGTGGGGCAGAGCTGTGGGCT < 41bp 0.777957567035552 0.532914556276755 0.9004105 0.7866091 prediction 0.490086021517594 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16359714 chr1:16359716 nonsynonymous SNV 0.098 1 23 hm5C_associated_SNPs_67068 0 0 0 0 2 CLCNKA chr1:16359751 5'GT 16359751 Upstream 36bp
chrX 105865928 105865928 1 + A C GBM 105865927 + 105865907 105865947 41 CTTGAAATGACCTGGACTAACAGAAGAAATTTTCCTGCATT CTTGAAATGACCTGGACTAACCGAAGAAATTTTCCTGCATT < 41bp 0.763248263908217 0.518211167041132 0.77041847 0.32979473 prediction 0.490074193734169 Functional Loss - CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105865927 chrX:105865928 synonymous SNV . 0 22 hm5C_associated_SNPs_67070 0 0 1 0 2 CXorf57 chrX:105865881 3'AG 105865881 Downstream 48bp
chrX 105865928 105865928 1 + A C GBM 105865927 + 105865907 105865947 41 CTTGAAATGACCTGGACTAACAGAAGAAATTTTCCTGCATT CTTGAAATGACCTGGACTAACCGAAGAAATTTTCCTGCATT < 41bp 0.763248263908217 0.518211167041132 0.77041847 0.32979473 prediction 0.490074193734169 Functional Loss - CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105865927 chrX:105865928 synonymous SNV . 0 22 hm5C_associated_SNPs_67070 0 0 1 0 2 CXorf57 chrX:105866023 5'GT 105866023 Upstream 96bp
chr5 142513590 142513590 1 + A T SKCM 142513586 + 142513566 142513606 41 ATGCCCAGCTGCACCTGTCTCGGAAGAAGAGCAGTGACTCC ATGCCCAGCTGCACCTGTCTCGGATGAAGAGCAGTGACTCC < 41bp 0.745024606180442 0.43632753545837 0.95562434 0.9480198 prediction 0.490049212360884 Functional Loss - ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142513586 chr5:142513590 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_67073 0 0 0 0 2 ARHGAP26 chr5:142513532 3'AG 142513532 Downstream 59bp
chr5 142513590 142513590 1 + A T SKCM 142513586 + 142513566 142513606 41 ATGCCCAGCTGCACCTGTCTCGGAAGAAGAGCAGTGACTCC ATGCCCAGCTGCACCTGTCTCGGATGAAGAGCAGTGACTCC < 41bp 0.745024606180442 0.43632753545837 0.95562434 0.9480198 prediction 0.490049212360884 Functional Loss - ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142513586 chr5:142513590 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_67073 0 0 0 0 2 ARHGAP26 chr5:142513670 5'GT 142513670 Upstream 81bp
chr11 17663399 17663399 1 + G T SARC 17663397 + 17663377 17663417 41 CCCGCCCTGGCCTGTAGAACCAGGAGTACGAGCACCCGCGG CCCGCCCTGGCCTGTAGAACCATGAGTACGAGCACCCGCGG < 41bp 0.881075421982073 0.63605345646105 0.9441226 0.69427586 prediction 0.490043931042045 Functional Loss - OTOG ENSG00000188162 CDS Human protein_coding chr11:17663397 chr11:17663399 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_67074 0 0 0 0 2 OTOG chr11:17663394 3'AG 17663394 Downstream 6bp
chr11 17663399 17663399 1 + G T SARC 17663397 + 17663377 17663417 41 CCCGCCCTGGCCTGTAGAACCAGGAGTACGAGCACCCGCGG CCCGCCCTGGCCTGTAGAACCATGAGTACGAGCACCCGCGG < 41bp 0.881075421982073 0.63605345646105 0.9441226 0.69427586 prediction 0.490043931042045 Functional Loss - OTOG ENSG00000188162 CDS Human protein_coding chr11:17663397 chr11:17663399 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_67074 0 0 0 0 2 OTOG chr11:17663498 5'GT 17663498 Upstream 100bp
chr2 130948089 130948089 1 + G T LUAD 130948087 + 130948067 130948107 41 CGGGGGAGCATTGGCCCTGGCGGAACGCAGCAGCCGCGAAG CGGGGGAGCATTGGCCCTGGCGTAACGCAGCAGCCGCGAAG < 41bp 0.886485436025409 0.641468111645041 0.86044157 0.4004338 prediction 0.490034648760736 Functional Loss - MZT2B ENSG00000152082 CDS Human protein_coding chr2:130948087 chr2:130948089 stopgain 0.008 0 23 hm5C_associated_SNPs_67078 0 0 1 0 1 MZT2B chr2:130948042 3'AG 130948042 Downstream 48bp
chr16 3076282 3076282 1 + C T SKCM 3076280 + 3076260 3076300 41 GGAGCTGTGGCGTCGTCAGCCTCCATACAGGTGAGCAGGGC GGAGCTGTGGCGTCGTCAGCCTTCATACAGGTGAGCAGGGC < 41bp 0.836259323819124 0.591248441070454 0.9598062 0.6880388 prediction 0.49002176549734 Functional Loss - THOC6 ENSG00000131652 CDS Human protein_coding chr16:3076280 chr16:3076282 nonsynonymous SNV 0.926 2 23 hm5C_associated_SNPs_67081 0 0 1 0 2 THOC6 chr16:3076252 3'AG 3076252 Downstream 31bp
chr16 3076282 3076282 1 + C T SKCM 3076280 + 3076260 3076300 41 GGAGCTGTGGCGTCGTCAGCCTCCATACAGGTGAGCAGGGC GGAGCTGTGGCGTCGTCAGCCTTCATACAGGTGAGCAGGGC < 41bp 0.836259323819124 0.591248441070454 0.9598062 0.6880388 prediction 0.49002176549734 Functional Loss - THOC6 ENSG00000131652 CDS Human protein_coding chr16:3076280 chr16:3076282 nonsynonymous SNV 0.926 2 23 hm5C_associated_SNPs_67081 0 0 1 0 2 THOC6 chr16:3076289 5'GT 3076289 Upstream 8bp
chr2 162279943 162279943 1 + G T UCEC 162279941 + 162279921 162279961 41 CCAACGACTCGCCGCGCTCGCAGATCGTGCCCGGGGCCCGC CCAACGACTCGCCGCGCTCGCATATCGTGCCCGGGGCCCGC < 41bp 0.745009812446834 0.385883791733885 0.3465142 0.0738233 prediction 0.490019624893668 Functional Loss - TBR1 ENSG00000136535 CDS Human protein_coding chr2:162279941 chr2:162279943 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_67082 0 0 1 0 1 TBR1 chr2:162279880 3'AG 162279880 Downstream 64bp
chr1 25617229 25617229 1 + G A LUAD 25617226 + 25617206 25617246 41 CGCAGTTGGTGGTGATGGTGCTGGTGGAGGTGACAGCTTTA CGCAGTTGGTGGTGATGGTGCTGATGGAGGTGACAGCTTTA < 41bp 0.758624890639453 0.513622821480082 0.38713175 0.32683402 prediction 0.490004138318742 Functional Loss - RHD ENSG00000187010 CDS Human protein_coding chr1:25617226 chr1:25617229 nonsynonymous SNV 0.377 2 24 hm5C_associated_SNPs_67085 0 0 0 0 2 RHD chr1:25617132 3'AG 25617132 Downstream 98bp
chr1 25617229 25617229 1 + G A LUAD 25617226 + 25617206 25617246 41 CGCAGTTGGTGGTGATGGTGCTGGTGGAGGTGACAGCTTTA CGCAGTTGGTGGTGATGGTGCTGATGGAGGTGACAGCTTTA < 41bp 0.758624890639453 0.513622821480082 0.38713175 0.32683402 prediction 0.490004138318742 Functional Loss - RHD ENSG00000187010 CDS Human protein_coding chr1:25617226 chr1:25617229 nonsynonymous SNV 0.377 2 24 hm5C_associated_SNPs_67085 0 0 0 0 2 RHD chr1:25617282 5'GT 25617282 Upstream 54bp
chr6 33371529 33371529 1 + G T CESC 33371527 + 33371507 33371547 41 ATCAGGTGTTCCTCCCATGGCAGGAGGGAAGAAACCCAGCA ATCAGGTGTTCCTCCCATGGCATGAGGGAAGAAACCCAGCA < 41bp 0.745001665548234 0.407752967209743 0.632128 0.45255283 prediction 0.490003331096468 Functional Loss - KIFC1 ENSG00000237649 CDS Human protein_coding chr6:33371527 chr6:33371529 stopgain 0.112 0 23 hm5C_associated_SNPs_67086 0 0 1 0 1 KIFC1 chr6:33371506 3'AG 33371506 Downstream 24bp
chr15 40861942 40861942 1 + G C CESC 40861941 + 40861921 40861961 41 GCAGAAACCAGTTATTACTTCGAGGGCGGCCTGCGTAAGGT GCAGAAACCAGTTATTACTTCCAGGGCGGCCTGCGTAAGGT < 41bp 0.744997726801624 0.427552843854486 0.9107913 0.638975 prediction 0.489995453603248 Functional Loss - RPUSD2 ENSG00000166133 CDS Human protein_coding chr15:40861941 chr15:40861942 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_67087 0 0 1 0 1 RPUSD2 chr15:40861959 5'GT 40861959 Upstream 18bp
chr1 1246415 1246415 1 + G A UCEC 1246412 + 1246392 1246432 41 AGACACGTGTAGCCCCAGCCCACGGCTTATTCCTCAAGTCA AGACACGTGTAGCCCCAGCCCACAGCTTATTCCTCAAGTCA < 41bp 0.754928464032057 0.509933550223498 0.1459074 0.11029929 prediction 0.489989827617118 Functional Loss - PUSL1 ENSG00000169972 CDS Human protein_coding chr1:1246412 chr1:1246415 nonsynonymous SNV 0.177 3 24 hm5C_associated_SNPs_67088 0 0 1 0 1 PUSL1 chr1:1246451 5'GT 1246451 Upstream 37bp
chr22 25625545 25625545 1 + C T rs4049504 25625543 + 25625523 25625563 41 TCTGTGCGGGTGCAGAGTGGCACGTAAGTGCGTTGCCAGCC TCTGTGCGGGTGCAGAGTGGCATGTAAGTGCGTTGCCAGCC < 41bp 0.76978166274755 0.524791140740591 0.49435613 0.52233547 prediction 0.489981044013918 Functional Loss - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25625543 chr22:25625545 nonsynonymous SNV 0.989 4 23 hm5C_associated_SNPs_67089 0 0 0 0 1 CRYBB2 chr22:25625545 5'GT 25625545 Upstream 1bp
chr1 70503849 70503849 1 + G C LUAD 70503848 + 70503828 70503868 41 CAAAGCCATTACTCAGCCAGCGGGAGGCTGTTCCCCCAGGC CAAAGCCATTACTCAGCCAGCCGGAGGCTGTTCCCCCAGGC < 41bp 0.852426602661317 0.607444448309031 0.91304517 0.89721996 prediction 0.489964308704573 Functional Loss - LRRC7 ENSG00000033122 CDS Human protein_coding chr1:70503848 chr1:70503849 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_67091 0 0 0 0 1 LRRC7 chr1:70503796 3'AG 70503796 Downstream 54bp
chr20 30674593 30674593 1 + C T UCEC 30674591 + 30674571 30674611 41 AAGGAGCCCATCTACATCATCACGGAGTTCATGGCCAAAGG AAGGAGCCCATCTACATCATCATGGAGTTCATGGCCAAAGG < 41bp 0.799790921542624 0.554810303867055 0.38270342 0.22666231 prediction 0.489961235351138 Functional Loss - HCK ENSG00000101336 CDS Human protein_coding chr20:30674591 chr20:30674593 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_67092 0 0 0 0 1 HCK chr20:30674610 5'GT 30674610 Upstream 18bp
chr2 96934294 96934294 1 + G C SKCM 96934290 + 96934270 96934310 41 ACCCTTGAGGGCCATGAATCCACTGTGTGGAGCTTGGCCTT ACCCTTGAGGGCCATGAATCCACTCTGTGGAGCTTGGCCTT < 41bp 0.744978666886858 0.468359053441351 0.4119237 0.21952307 prediction 0.489957333773717 Functional Loss - CIAO1 ENSG00000144021 CDS Human protein_coding chr2:96934290 chr2:96934294 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_67093 0 0 1 0 1 CIAO1 chr2:96934195 3'AG 96934195 Downstream 100bp
chr19 56203203 56203203 1 + G T LUAD 56203200 + 56203180 56203220 41 CCCTGGGGGGGCCCAGCACCCATGGCTGCTGCCGTCCCCAC CCCTGGGGGGGCCCAGCACCCATTGCTGCTGCCGTCCCCAC < 41bp 0.919720273860468 0.674742897121589 0.7289562 0.24209014 prediction 0.489954753477758 Functional Loss - EPN1 ENSG00000063245 CDS Human protein_coding chr19:56203200 chr19:56203203 nonsynonymous SNV 0.032 0 24 hm5C_associated_SNPs_67094 0 0 1 0 1 EPN1 chr19:56203120 3'AG 56203120 Downstream 84bp
chr4 39465225 39465225 1 + G T ESCA 39465222 + 39465202 39465242 41 GCCACCGCCACAGCCACGATCATGGTAGGGCCAGCCTCAAC GCCACCGCCACAGCCACGATCATTGTAGGGCCAGCCTCAAC < 41bp 0.744976940520902 0.345775233296399 0.90867317 0.123036385 prediction 0.489953881041803 Functional Loss - LIAS ENSG00000121897 CDS Human protein_coding chr4:39465222 chr4:39465225 nonsynonymous SNV 0.958 4 24 hm5C_associated_SNPs_67095 0 0 1 0 2 LIAS chr4:39465145 3'AG 39465145 Downstream 81bp
chr4 39465225 39465225 1 + G T ESCA 39465222 + 39465202 39465242 41 GCCACCGCCACAGCCACGATCATGGTAGGGCCAGCCTCAAC GCCACCGCCACAGCCACGATCATTGTAGGGCCAGCCTCAAC < 41bp 0.744976940520902 0.345775233296399 0.90867317 0.123036385 prediction 0.489953881041803 Functional Loss - LIAS ENSG00000121897 CDS Human protein_coding chr4:39465222 chr4:39465225 nonsynonymous SNV 0.958 4 24 hm5C_associated_SNPs_67095 0 0 1 0 2 LIAS chr4:39465225 5'GT 39465225 Upstream 1bp
chr17 7476746 7476746 1 + C T rs573926042 7476744 + 7476724 7476764 41 GCCTAACCCCGAGGAGCGGCCGCGTGAGGCACCAGGAGCCC GCCTAACCCCGAGGAGCGGCCGTGTGAGGCACCAGGAGCCC < 41bp 0.750140562153983 0.505167271524097 0.47811374 0.42025387 prediction 0.489946581259772 Functional Loss - SENP3-EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7476744 chr17:7476746 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_67096 0 0 1 0 1 SENP3-EIF4A1 chr17:7476718 3'AG 7476718 Downstream 29bp
chr16 88925152 88925152 1 + G T UCEC 88925150 + 88925130 88925170 41 TGGGGAAGGCCCTGGTCGACCAGAGGGAGCTGTACCTGGGC TGGGGAAGGCCCTGGTCGACCATAGGGAGCTGTACCTGGGC < 41bp 0.892434128751017 0.647463707125787 0.9205289 0.8947253 prediction 0.48994084325046 Functional Loss - TRAPPC2L ENSG00000167515 CDS Human protein_coding chr16:88925150 chr16:88925152 nonsynonymous SNV 0.992 3 23 hm5C_associated_SNPs_67097 0 0 1 0 2 TRAPPC2L chr16:88925197 5'GT 88925197 Upstream 46bp
chr16 88925152 88925152 1 + G T UCEC 88925150 + 88925130 88925170 41 TGGGGAAGGCCCTGGTCGACCAGAGGGAGCTGTACCTGGGC TGGGGAAGGCCCTGGTCGACCATAGGGAGCTGTACCTGGGC < 41bp 0.892434128751017 0.647463707125787 0.9205289 0.8947253 prediction 0.48994084325046 Functional Loss - TRAPPC2L ENSG00000167515 CDS Human other chr16:88925150 chr16:88925152 nonsynonymous SNV 0.992 3 23 hm5C_associated_SNPs_67097 0 0 1 0 2 TRAPPC2L;TRAPPC2L chr16:88925199 5'GT 88925199 Upstream 48bp
chr5 148697447 148697447 1 + C T UCEC 148697445 + 148697425 148697465 41 GGTGGCCCCGGGCTTTGGGCCCCGACACCCATTTGCCTTCA GGTGGCCCCGGGCTTTGGGCCCTGACACCCATTTGCCTTCA < 41bp 0.744955563175252 0.4586091084981 0.07239568 0.120453894 prediction 0.489911126350503 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148697445 chr5:148697447 stopgain 0.960 1 23 hm5C_associated_SNPs_67103 0 0 0 0 1 AFAP1L1 chr5:148697503 5'GT 148697503 Upstream 57bp
chr11 68700826 68700826 1 + C T UCEC 68700824 + 68700804 68700844 41 CGCCTGGCTGAGGAGTACGGCGCGAGGGTGGTGCGGACACT CGCCTGGCTGAGGAGTACGGCGTGAGGGTGGTGCGGACACT < 41bp 0.811204005309295 0.566255606064776 0.59222895 0.45015827 prediction 0.489896798489039 Functional Loss - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68700824 chr11:68700826 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_67106 1 0 1 0 1 IGHMBP2 chr11:68700767 3'AG 68700767 Downstream 60bp
chr5 139216472 139216472 1 + C T LGG 139216470 + 139216450 139216490 41 GACAGGCACGAAGAAGGTGACGCGAATCCTGGATGGTGGCA GACAGGCACGAAGAAGGTGACGTGAATCCTGGATGGTGGCA < 41bp 0.827259727088925 0.58231353073693 0.3403356 0.2365337 prediction 0.489892392703991 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139216470 chr5:139216472 stopgain 0.992 1 23 hm5C_associated_SNPs_67107 0 0 0 0 1 PSD2 chr5:139216396 3'AG 139216396 Downstream 77bp
chrX 152018931 152018931 1 + G T LUAD 152018929 + 152018909 152018949 41 AGCAAGGGTTTGATAATCCCCAGGTGCGGTTCTTTCTGGGT AGCAAGGGTTTGATAATCCCCATGTGCGGTTCTTTCTGGGT < 41bp 0.744938764750445 0.39093171591222 0.85398924 0.2734632 prediction 0.489877529500889 Functional Loss - NSDHL ENSG00000147383 CDS Human protein_coding chrX:152018929 chrX:152018931 nonsynonymous SNV 0.959 2 23 hm5C_associated_SNPs_67108 0 0 1 0 1 NSDHL chrX:152018967 5'GT 152018967 Upstream 37bp
chr14 77686430 77686430 1 + G T UCEC 77686427 + 77686407 77686447 41 TTGGAGATGGAACGCAGAGACAAGGTGAGTGCTGGGAGCGG TTGGAGATGGAACGCAGAGACAATGTGAGTGCTGGGAGCGG < 41bp 0.7449321022954 0.343327793249149 0.43385923 0.4536243 prediction 0.489864204590799 Functional Loss - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77686427 chr14:77686430 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_67110 0 0 0 0 2 TMEM63C chr14:77686349 3'AG 77686349 Downstream 82bp
chr14 77686430 77686430 1 + G T UCEC 77686427 + 77686407 77686447 41 TTGGAGATGGAACGCAGAGACAAGGTGAGTGCTGGGAGCGG TTGGAGATGGAACGCAGAGACAATGTGAGTGCTGGGAGCGG < 41bp 0.7449321022954 0.343327793249149 0.43385923 0.4536243 prediction 0.489864204590799 Functional Loss - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77686427 chr14:77686430 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_67110 0 0 0 0 2 TMEM63C chr14:77686430 5'GT 77686430 Upstream 1bp
chr11 6291911 6291911 1 + C T LAML 6291909 + 6291889 6291929 41 CTTCTGCTCTTGTTCTTCATCCCGGGTGTGGTTATGGCCGT CTTCTGCTCTTGTTCTTCATCCTGGGTGTGGTTATGGCCGT < 41bp 0.798077121087716 0.553151228289768 0.9025427 0.8997221 prediction 0.489851785595895 Functional Loss - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6291909 chr11:6291911 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_67112 0 0 0 0 1 CCKBR chr11:6291876 3'AG 6291876 Downstream 36bp
chr9 127618003 127618003 1 + G T GBM 127618000 + 127617980 127618020 41 TGTCCGCCTGTGGGATGTGGCAAGAGCGAAGTGTCTGCGGG TGTCCGCCTGTGGGATGTGGCAATAGCGAAGTGTCTGCGGG < 41bp 0.919150613866487 0.674225061630775 0.86519307 0.42394564 prediction 0.489851104471424 Functional Loss - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127618000 chr9:127618003 nonsynonymous SNV 0.008 1 24 hm5C_associated_SNPs_67113 0 0 0 0 1 WDR38 chr9:127617913 3'AG 127617913 Downstream 91bp
chr13 28009312 28009312 1 + A T UCS 28009308 + 28009288 28009328 41 GCTGTTGTACATGATCCTGACAAGAAGAAAATGAAGCTCAA GCTGTTGTACATGATCCTGACAAGTAGAAAATGAAGCTCAA < 41bp 0.744924151437239 0.426864417006938 0.47281352 0.37747115 prediction 0.489848302874478 Functional Loss - GTF3A ENSG00000122034 CDS Human protein_coding chr13:28009308 chr13:28009312 stopgain 0.998 1 25 hm5C_associated_SNPs_67114 0 0 1 0 2 GTF3A chr13:28009270 3'AG 28009270 Downstream 43bp
chr13 28009312 28009312 1 + A T UCS 28009308 + 28009288 28009328 41 GCTGTTGTACATGATCCTGACAAGAAGAAAATGAAGCTCAA GCTGTTGTACATGATCCTGACAAGTAGAAAATGAAGCTCAA < 41bp 0.744924151437239 0.426864417006938 0.47281352 0.37747115 prediction 0.489848302874478 Functional Loss - GTF3A ENSG00000122034 CDS Human protein_coding chr13:28009308 chr13:28009312 stopgain 0.998 1 25 hm5C_associated_SNPs_67114 0 0 1 0 2 GTF3A chr13:28009329 5'GT 28009329 Upstream 18bp
chr9 137967559 137967559 1 + G T LUAD 137967556 + 137967536 137967576 41 AGCACCCAGGGCCCTGCATGCCAGGTCGTTGGAGGTGGCAG AGCACCCAGGGCCCTGCATGCCATGTCGTTGGAGGTGGCAG < 41bp 0.744923636607161 0.361372261362 0.36086148 0.13342798 prediction 0.489847273214321 Functional Loss - OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137967556 chr9:137967559 nonsynonymous SNV 0.962 3 24 hm5C_associated_SNPs_67115 0 0 0 0 1 OLFM1 chr9:137967648 5'GT 137967648 Upstream 90bp
chr5 139745807 139745807 1 + G T SARC 139745805 + 139745785 139745825 41 GCTGTGGCCTTGATGCTTTCCTGGGCCTAGCCACACCAAAG GCTGTGGCCTTGATGCTTTCCTTGGCCTAGCCACACCAAAG < 41bp 0.744921885498722 0.392168243641276 0.424478 0.11275834 prediction 0.489843770997443 Functional Loss - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139745805 chr5:139745807 synonymous SNV . 0 23 hm5C_associated_SNPs_67116 0 0 0 0 2 SLC4A9 chr5:139745736 3'AG 139745736 Downstream 72bp
chr5 139745807 139745807 1 + G T SARC 139745805 + 139745785 139745825 41 GCTGTGGCCTTGATGCTTTCCTGGGCCTAGCCACACCAAAG GCTGTGGCCTTGATGCTTTCCTTGGCCTAGCCACACCAAAG < 41bp 0.744921885498722 0.392168243641276 0.424478 0.11275834 prediction 0.489843770997443 Functional Loss - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139745805 chr5:139745807 synonymous SNV . 0 23 hm5C_associated_SNPs_67116 0 0 0 0 2 SLC4A9 chr5:139745849 5'GT 139745849 Upstream 43bp
chr16 55522555 55522555 1 + G A HNSC 55522552 + 55522532 55522572 41 AGCTGCACCACTGAGGGCCGCACGGATGGCTACCGCTGGTG AGCTGCACCACTGAGGGCCGCACAGATGGCTACCGCTGGTG < 41bp 0.74491919481033 0.491306896595595 0.26422313 0.12656415 prediction 0.489838389620659 Functional Loss - MMP2 ENSG00000087245 CDS Human protein_coding chr16:55522552 chr16:55522555 synonymous SNV . 0 24 hm5C_associated_SNPs_67117 0 0 0 0 1 MMP2 chr16:55522628 5'GT 55522628 Upstream 74bp
chr1 20662903 20662903 1 + G T UCEC 20662900 + 20662880 20662920 41 CTGGAAGGTGGAGACTGTGCCAAGAACTCGGGGGCACCCTT CTGGAAGGTGGAGACTGTGCCAATAACTCGGGGGCACCCTT < 41bp 0.744896659468343 0.339634717763607 0.33023167 0.08469662 prediction 0.489793318936686 Functional Loss - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20662900 chr1:20662903 nonsynonymous SNV 0.301 1 24 hm5C_associated_SNPs_67120 0 0 0 0 1 VWA5B1 chr1:20662979 5'GT 20662979 Upstream 77bp
chr12 113722420 113722420 1 + C T UCEC 113722418 + 113722398 113722438 41 CAGTCAACGGGGTCTGGATCCTCGTGGAGACATTTATGCTG CAGTCAACGGGGTCTGGATCCTTGTGGAGACATTTATGCTG < 41bp 0.744895098374105 0.461036582523534 0.7071871 0.39226452 prediction 0.489790196748211 Functional Loss - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113722418 chr12:113722420 synonymous SNV . 0 23 hm5C_associated_SNPs_67121 0 0 1 0 2 TPCN1 chr12:113722386 3'AG 113722386 Downstream 35bp
chr12 113722420 113722420 1 + C T UCEC 113722418 + 113722398 113722438 41 CAGTCAACGGGGTCTGGATCCTCGTGGAGACATTTATGCTG CAGTCAACGGGGTCTGGATCCTTGTGGAGACATTTATGCTG < 41bp 0.744895098374105 0.461036582523534 0.7071871 0.39226452 prediction 0.489790196748211 Functional Loss - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113722418 chr12:113722420 synonymous SNV . 0 23 hm5C_associated_SNPs_67121 0 0 1 0 2 TPCN1 chr12:113722442 5'GT 113722442 Upstream 23bp
chr4 110920910 110920910 1 + C T UCEC 110920908 + 110920888 110920928 41 GGGAACTGCGCCACGCTGGCCACGGGCAGCAGCAGAAGGTC GGGAACTGCGCCACGCTGGCCATGGGCAGCAGCAGAAGGTC < 41bp 0.805172977049356 0.560284858271692 0.69050115 0.559309 prediction 0.489776237555327 Functional Loss - EGF ENSG00000138798 CDS Human protein_coding chr4:110920908 chr4:110920910 synonymous SNV . 0 23 hm5C_associated_SNPs_67122 0 0 0 0 2 EGF chr4:110920835 3'AG 110920835 Downstream 76bp
chr4 110920910 110920910 1 + C T UCEC 110920908 + 110920888 110920928 41 GGGAACTGCGCCACGCTGGCCACGGGCAGCAGCAGAAGGTC GGGAACTGCGCCACGCTGGCCATGGGCAGCAGCAGAAGGTC < 41bp 0.805172977049356 0.560284858271692 0.69050115 0.559309 prediction 0.489776237555327 Functional Loss - EGF ENSG00000138798 CDS Human protein_coding chr4:110920908 chr4:110920910 synonymous SNV . 0 23 hm5C_associated_SNPs_67122 0 0 0 0 2 EGF chr4:110921002 5'GT 110921002 Upstream 93bp
chr16 32077628 32077628 1 + G T rs538754726 32077626 + 32077606 32077646 41 ACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGA ACGCCAAGAACTCACTGTATCTTCAAATGAACAGCCTGAGA < 41bp 0.744884426876545 0.415003906015968 0.7449114 0.85628974 prediction 0.48976885375309 Functional Loss - ZNF267;LOC102723753 ENSG00000270472 CDS Human IG_V_gene chr16:32077626 chr16:32077628 synonymous SNV . 0 23 hm5C_associated_SNPs_67124 0 0 0 0 1 ZNF267;LOC102723753 chr16:32077570 3'AG 32077570 Downstream 59bp
chr14 45583431 45583431 1 + G T UCEC 45583429 + 45583409 45583449 41 ATCAAACACTCCTGAAAGAACAGGATTCTTTAAAAAGGAAA ATCAAACACTCCTGAAAGAACATGATTCTTTAAAAAGGAAA < 41bp 0.744882890146314 0.425558379034629 0.21168801 0.084536016 prediction 0.489765780292628 Functional Loss - PRPF39 ENSG00000185246 CDS Human protein_coding chr14:45583429 chr14:45583431 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_67125 0 0 1 0 2 PRPF39 chr14:45583386 3'AG 45583386 Downstream 46bp
chr14 45583431 45583431 1 + G T UCEC 45583429 + 45583409 45583449 41 ATCAAACACTCCTGAAAGAACAGGATTCTTTAAAAAGGAAA ATCAAACACTCCTGAAAGAACATGATTCTTTAAAAAGGAAA < 41bp 0.744882890146314 0.425558379034629 0.21168801 0.084536016 prediction 0.489765780292628 Functional Loss - PRPF39 ENSG00000185246 CDS Human protein_coding chr14:45583429 chr14:45583431 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_67125 0 0 1 0 2 PRPF39 chr14:45583460 5'GT 45583460 Upstream 30bp
chr9 130106571 130106571 1 + C T COAD 130106569 + 130106549 130106589 41 ACCAGAGTCACCCAAGTCAGCGCGGAAGAAAGAGGAGGCCC ACCAGAGTCACCCAAGTCAGCGTGGAAGAAAGAGGAGGCCC < 41bp 0.808920039197938 0.564037395476989 0.42747483 0.39019668 prediction 0.489765287441898 Functional Loss - GARNL3 ENSG00000136895 CDS Human protein_coding chr9:130106569 chr9:130106571 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_67126 0 0 0 0 2 GARNL3 chr9:130106514 3'AG 130106514 Downstream 58bp
chr9 130106571 130106571 1 + C T COAD 130106569 + 130106549 130106589 41 ACCAGAGTCACCCAAGTCAGCGCGGAAGAAAGAGGAGGCCC ACCAGAGTCACCCAAGTCAGCGTGGAAGAAAGAGGAGGCCC < 41bp 0.808920039197938 0.564037395476989 0.42747483 0.39019668 prediction 0.489765287441898 Functional Loss - GARNL3 ENSG00000136895 CDS Human protein_coding chr9:130106569 chr9:130106571 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_67126 0 0 0 0 2 GARNL3 chr9:130106618 5'GT 130106618 Upstream 48bp
chr9 133750337 133750337 1 + G T SARC 133750335 + 133750315 133750355 41 TGGCCTGAGCAGGTTGATGACAGGGGACACCTACACAGCCC TGGCCTGAGCAGGTTGATGACATGGGACACCTACACAGCCC < 41bp 0.897466680974301 0.652590311916737 0.9260663 0.18120858 prediction 0.489752738115128 Functional Loss - ABL1 ENSG00000097007 CDS Human protein_coding chr9:133750335 chr9:133750337 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_67128 0 0 1 0 1 ABL1 chr9:133750255 3'AG 133750255 Downstream 83bp
chr1 100356892 100356892 1 + C T UCEC 100356890 + 100356870 100356910 41 TGTCAGTAACCGGCTTATTTCACGATCAGGAACTATTGCTG TGTCAGTAACCGGCTTATTTCATGATCAGGAACTATTGCTG < 41bp 0.823889874981722 0.57901351866426 0.3090075 0.22149885 prediction 0.489752712634924 Functional Loss - AGL ENSG00000162688 CDS Human protein_coding chr1:100356890 chr1:100356892 stopgain 0.986 1 23 hm5C_associated_SNPs_67129 1 0 1 0 1 AGL chr1:100356912 5'GT 100356912 Upstream 21bp
chr3 97499503 97499503 1 + G T COAD 97499501 + 97499481 97499521 41 ATGTCAGGTCAAGGAAGATACAGAAATCTCTGGGAACACTA ATGTCAGGTCAAGGAAGATACATAAATCTCTGGGAACACTA < 41bp 0.744872159197552 0.422129683136934 0.095315844 0.024211854 prediction 0.489744318395104 Functional Loss - ARL6 ENSG00000113966 CDS Human protein_coding chr3:97499501 chr3:97499503 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_67130 0 0 1 0 2 ARL6 chr3:97499459 3'AG 97499459 Downstream 45bp
chr3 97499503 97499503 1 + G T COAD 97499501 + 97499481 97499521 41 ATGTCAGGTCAAGGAAGATACAGAAATCTCTGGGAACACTA ATGTCAGGTCAAGGAAGATACATAAATCTCTGGGAACACTA < 41bp 0.744872159197552 0.422129683136934 0.095315844 0.024211854 prediction 0.489744318395104 Functional Loss - ARL6 ENSG00000113966 CDS Human protein_coding chr3:97499501 chr3:97499503 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_67130 0 0 1 0 2 ARL6 chr3:97499527 5'GT 97499527 Upstream 25bp
chr3 97499505 97499505 1 + A C UCEC 97499501 + 97499481 97499521 41 ATGTCAGGTCAAGGAAGATACAGAAATCTCTGGGAACACTA ATGTCAGGTCAAGGAAGATACAGACATCTCTGGGAACACTA < 41bp 0.744872159197552 0.350804916342764 0.095315844 0.1273179 prediction 0.489744318395104 Functional Loss - ARL6 ENSG00000113966 CDS Human protein_coding chr3:97499501 chr3:97499505 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_67131 0 0 0 0 2 ARL6 chr3:97499459 3'AG 97499459 Downstream 47bp
chr3 97499505 97499505 1 + A C UCEC 97499501 + 97499481 97499521 41 ATGTCAGGTCAAGGAAGATACAGAAATCTCTGGGAACACTA ATGTCAGGTCAAGGAAGATACAGACATCTCTGGGAACACTA < 41bp 0.744872159197552 0.350804916342764 0.095315844 0.1273179 prediction 0.489744318395104 Functional Loss - ARL6 ENSG00000113966 CDS Human protein_coding chr3:97499501 chr3:97499505 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_67131 0 0 0 0 2 ARL6 chr3:97499527 5'GT 97499527 Upstream 23bp
chr19 35530541 35530541 1 + C T COAD 35530539 + 35530519 35530559 41 ACCTGGCCTTTCCCCCACAGCTCGGAATACCTGGCCATCAC ACCTGGCCTTTCCCCCACAGCTTGGAATACCTGGCCATCAC < 41bp 0.789146021034005 0.54428328126131 0.2320588 0.076684296 prediction 0.489725479545389 Functional Loss - SCN1B ENSG00000105711 CDS Human protein_coding chr19:35530539 chr19:35530541 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_67133 0 0 0 0 2 SCN1B chr19:35530539 3'AG 35530539 Downstream 3bp
chr19 35530541 35530541 1 + C T COAD 35530539 + 35530519 35530559 41 ACCTGGCCTTTCCCCCACAGCTCGGAATACCTGGCCATCAC ACCTGGCCTTTCCCCCACAGCTTGGAATACCTGGCCATCAC < 41bp 0.789146021034005 0.54428328126131 0.2320588 0.076684296 prediction 0.489725479545389 Functional Loss - SCN1B ENSG00000105711 CDS Human protein_coding chr19:35530539 chr19:35530541 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_67133 0 0 0 0 2 SCN1B chr19:35530610 5'GT 35530610 Upstream 70bp
chr17 47583714 47583714 1 + G C BLCA 47583713 + 47583693 47583733 41 GAGCCGTGCAAGCCGTGCACCGAGTGCGTGGGGCTCCAGAG GAGCCGTGCAAGCCGTGCACCCAGTGCGTGGGGCTCCAGAG < 41bp 0.744852998785811 0.433761726569659 0.77030814 0.1733847 prediction 0.489705997571623 Functional Loss - NGFR ENSG00000064300 CDS Human protein_coding chr17:47583713 chr17:47583714 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_67135 0 0 0 0 1 NGFR chr17:47583661 3'AG 47583661 Downstream 54bp
chr19 7524857 7524857 1 + C T UCEC 7524855 + 7524835 7524875 41 AGGAAGGTGGTCGAGGCCCGCGCCACGAGACTCCGGGACTT AGGAAGGTGGTCGAGGCCCGCGTCACGAGACTCCGGGACTT < 41bp 0.811063942553161 0.566211449442702 0.5593548 0.43389297 prediction 0.489704986220918 Functional Loss - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7524855 chr19:7524857 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_67136 0 0 1 0 2 ARHGEF18 chr19:7524789 3'AG 7524789 Downstream 69bp
chr19 7524857 7524857 1 + C T UCEC 7524855 + 7524835 7524875 41 AGGAAGGTGGTCGAGGCCCGCGCCACGAGACTCCGGGACTT AGGAAGGTGGTCGAGGCCCGCGTCACGAGACTCCGGGACTT < 41bp 0.811063942553161 0.566211449442702 0.5593548 0.43389297 prediction 0.489704986220918 Functional Loss - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7524855 chr19:7524857 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_67136 0 0 1 0 2 ARHGEF18 chr19:7524880 5'GT 7524880 Upstream 24bp
chr1 155279692 155279692 1 + G T BLCA 155279689 + 155279669 155279709 41 TACGGCGGCCCTCCCTGGTGCACGGGTACCCAGTCCTGGCC TACGGCGGCCCTCCCTGGTGCACTGGTACCCAGTCCTGGCC < 41bp 0.920377707991156 0.675526798143244 0.85755885 0.32568967 prediction 0.489701819695824 Functional Loss - FDPS ENSG00000160752 CDS Human protein_coding chr1:155279689 chr1:155279692 nonsynonymous SNV 0.615 0 24 hm5C_associated_SNPs_67138 0 0 1 0 1 FDPS chr1:155279756 5'GT 155279756 Upstream 65bp
chr17 45757887 45757887 1 + G T SARC 45757885 + 45757865 45757905 41 TTTGCACAGGGACTTATGTACAGCATTTGGGAAGGATGTAC TTTGCACAGGGACTTATGTACATCATTTGGGAAGGATGTAC < 41bp 0.744836320880762 0.420528138260227 0.19483429 0.13863331 prediction 0.489672641761524 Functional Loss - KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45757885 chr17:45757887 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_67142 0 0 1 0 1 KPNB1 chr17:45757874 3'AG 45757874 Downstream 14bp
chr15 22853832 22853832 1 + G T UCEC 22853829 + 22853809 22853849 41 GGGCACCTGTGGGATGGCGCCAGGGAGTTCATCATCCAGAG GGGCACCTGTGGGATGGCGCCAGTGAGTTCATCATCCAGAG < 41bp 0.920289079937279 0.675455183723292 0.8799231 0.2806733 prediction 0.489667792427974 Functional Loss - TUBGCP5 ENSG00000153575 CDS Human other chr15:22853829 chr15:22853832 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_67143 0 0 1 0 2 TUBGCP5 chr15:22853734 3'AG 22853734 Downstream 99bp
chr15 22853832 22853832 1 + G T UCEC 22853829 + 22853809 22853849 41 GGGCACCTGTGGGATGGCGCCAGGGAGTTCATCATCCAGAG GGGCACCTGTGGGATGGCGCCAGTGAGTTCATCATCCAGAG < 41bp 0.920289079937279 0.675455183723292 0.8799231 0.2806733 prediction 0.489667792427974 Functional Loss - TUBGCP5 ENSG00000153575 CDS Human other chr15:22853829 chr15:22853832 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_67143 0 0 1 0 2 TUBGCP5 chr15:22853849 5'GT 22853849 Upstream 18bp
chr10 71860048 71860048 1 + C T UCEC 71860046 + 71860026 71860066 41 TCCCAAGGCCCTTTGGAAGTCGCCGAAGGTAAGTGTGGAAC TCCCAAGGCCCTTTGGAAGTCGTCGAAGGTAAGTGTGGAAC < 41bp 0.793593680872014 0.548769755408791 0.8436712 0.5391957 prediction 0.489647850926447 Functional Loss - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71860046 chr10:71860048 nonsynonymous SNV 0.955 2 23 hm5C_associated_SNPs_67147 0 0 1 0 2 H2AFY2 chr10:71859964 3'AG 71859964 Downstream 85bp
chr10 71860048 71860048 1 + C T UCEC 71860046 + 71860026 71860066 41 TCCCAAGGCCCTTTGGAAGTCGCCGAAGGTAAGTGTGGAAC TCCCAAGGCCCTTTGGAAGTCGTCGAAGGTAAGTGTGGAAC < 41bp 0.793593680872014 0.548769755408791 0.8436712 0.5391957 prediction 0.489647850926447 Functional Loss - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71860046 chr10:71860048 nonsynonymous SNV 0.955 2 23 hm5C_associated_SNPs_67147 0 0 1 0 2 H2AFY2 chr10:71860053 5'GT 71860053 Upstream 6bp
chr16 19067875 19067875 1 + C T BLCA 19067873 + 19067853 19067893 41 TGTCCTGGCAGCATCCCTTCCTCGAAAGCCTGTGGGCCGTT TGTCCTGGCAGCATCCCTTCCTTGAAAGCCTGTGGGCCGTT < 41bp 0.851274043184447 0.606455659584002 0.9215882 0.07810405 prediction 0.489636767200889 Functional Loss - TMC7 ENSG00000170537 CDS Human protein_coding chr16:19067873 chr16:19067875 nonsynonymous SNV 0.945 5 23 hm5C_associated_SNPs_67148 0 0 0 0 1 TMC7 chr16:19067864 3'AG 19067864 Downstream 12bp
chr5 137515397 137515397 1 + G T SARC 137515395 + 137515375 137515415 41 GCAAGGGATCCTTTCTCCGCCAGCGGGCTTGCTGTCCGATG GCAAGGGATCCTTTCTCCGCCATCGGGCTTGCTGTCCGATG < 41bp 0.744816534987947 0.39147608886264 0.47090057 0.16313753 prediction 0.489633069975895 Functional Loss - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137515395 chr5:137515397 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_67149 0 0 1 0 1 KIF20A chr5:137515349 3'AG 137515349 Downstream 49bp
chr12 95656699 95656699 1 + C T UCEC 95656697 + 95656677 95656717 41 GCAAGGATATTGGATTCCGACTCGACTCATTACATACCATC GCAAGGATATTGGATTCCGACTTGACTCATTACATACCATC < 41bp 0.744814466184546 0.474705469252402 0.0059045255 0.001306504 prediction 0.489628932369091 Functional Loss - VEZT ENSG00000028203 CDS Human protein_coding chr12:95656697 chr12:95656699 synonymous SNV . 0 23 hm5C_associated_SNPs_67150 0 0 1 0 1 VEZT chr12:95656682 3'AG 95656682 Downstream 18bp
chr3 140401925 140401925 1 + C T COAD 140401923 + 140401903 140401943 41 AGTTCTCTTTCCACAATGGCCACGACACCATTAGCCTCATC AGTTCTCTTTCCACAATGGCCATGACACCATTAGCCTCATC < 41bp 0.744813146562695 0.478648297016699 0.067647725 0.10991484 prediction 0.489626293125391 Functional Loss - TRIM42 ENSG00000155890 CDS Human protein_coding chr3:140401923 chr3:140401925 synonymous SNV . 0 23 hm5C_associated_SNPs_67151 0 0 0 0 1 TRIM42 chr3:140402001 5'GT 140402001 Upstream 77bp
chr8 11400842 11400842 1 + C T COAD 11400840 + 11400820 11400860 41 CGCCCAAGACAAGGACGCCCCGCCACTGCCGCCCCTGGTGA CGCCCAAGACAAGGACGCCCCGTCACTGCCGCCCCTGGTGA < 41bp 0.814906977547815 0.570094899680399 0.4133423 0.14746928 prediction 0.489624155734833 Functional Loss - BLK ENSG00000136573 CDS Human protein_coding chr8:11400840 chr8:11400842 nonsynonymous SNV 0.028 1 23 hm5C_associated_SNPs_67152 0 0 0 0 1 BLK chr8:11400856 5'GT 11400856 Upstream 15bp
chr16 1797085 1797085 1 + G T SARC 1797083 + 1797063 1797103 41 TCCTCGGCGGCCGCCACACCCAGCACCACAGGCACCAAGTC TCCTCGGCGGCCGCCACACCCATCACCACAGGCACCAAGTC < 41bp 0.744785158486986 0.39419824612665 0.87342227 0.09875202 prediction 0.489570316973973 Functional Loss - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1797083 chr16:1797085 nonsynonymous SNV 0.917 5 23 hm5C_associated_SNPs_67158 0 0 1 0 1 MAPK8IP3 chr16:1797030 3'AG 1797030 Downstream 56bp
chr6 158349639 158349639 1 + A C STAD 158349635 + 158349615 158349655 41 CCGCCTTCACCCACAGAGAGCAGAAGTGCGAGGCTGTGGGG CCGCCTTCACCCACAGAGAGCAGACGTGCGAGGCTGTGGGG < 41bp 0.74478137184823 0.344483146508579 0.88417447 0.82242894 prediction 0.48956274369646 Functional Loss - SNX9 ENSG00000130340 CDS Human protein_coding chr6:158349635 chr6:158349639 nonsynonymous SNV 0.844 3 25 hm5C_associated_SNPs_67161 0 0 1 0 2 SNX9 chr6:158349631 3'AG 158349631 Downstream 9bp
chr6 158349639 158349639 1 + A C STAD 158349635 + 158349615 158349655 41 CCGCCTTCACCCACAGAGAGCAGAAGTGCGAGGCTGTGGGG CCGCCTTCACCCACAGAGAGCAGACGTGCGAGGCTGTGGGG < 41bp 0.74478137184823 0.344483146508579 0.88417447 0.82242894 prediction 0.48956274369646 Functional Loss - SNX9 ENSG00000130340 CDS Human protein_coding chr6:158349635 chr6:158349639 nonsynonymous SNV 0.844 3 25 hm5C_associated_SNPs_67161 0 0 1 0 2 SNX9 chr6:158349734 5'GT 158349734 Upstream 96bp
chr12 111345220 111345220 1 + C T COAD 111345218 + 111345198 111345238 41 AGAATCGGAGTAAGGAAGTGCGCGGAGACAGCCTGCCTGAG AGAATCGGAGTAAGGAAGTGCGTGGAGACAGCCTGCCTGAG < 41bp 0.757459536367391 0.512686137387457 0.7521863 0.56702703 prediction 0.489546797959869 Functional Loss - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111345218 chr12:111345220 synonymous SNV . 0 23 hm5C_associated_SNPs_67163 0 0 0 0 1 CCDC63 chr12:111345135 3'AG 111345135 Downstream 86bp
chr2 242128153 242128153 1 + G C LUAD 242128149 + 242128129 242128169 41 GCTGAGAGGTGGGCCATGACCTCCGAGACCTCTTCCGGAAG GCTGAGAGGTGGGCCATGACCTCCCAGACCTCTTCCGGAAG < 41bp 0.830290294294895 0.585524445194385 0.41657278 0.37239784 prediction 0.48953169820102 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242128149 chr2:242128153 nonsynonymous SNV 0.660 2 25 hm5C_associated_SNPs_67164 0 0 0 0 1 ANO7 chr2:242128181 5'GT 242128181 Upstream 29bp
chr11 44135765 44135765 1 + G C BLCA 44135761 + 44135741 44135781 41 GTTGGCTGGTGGCGGCTTTTCTACGTGGACTTACCGGCAAG GTTGGCTGGTGGCGGCTTTTCTACCTGGACTTACCGGCAAG < 41bp 0.843972435982637 0.599222969745375 0.35045373 0.21752816 prediction 0.489498932474525 Functional Loss - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44135761 chr11:44135765 synonymous SNV . 0 25 hm5C_associated_SNPs_67167 0 0 1 0 1 EXT2 chr11:44135735 3'AG 44135735 Downstream 31bp
chr19 54403681 54403681 1 + C T COAD 54403679 + 54403659 54403699 41 ACCCCGTCCTCCAGGTTCTACGCGGCAGAAATCGCTATCGG ACCCCGTCCTCCAGGTTCTACGTGGCAGAAATCGCTATCGG < 41bp 0.770868585680985 0.526120865637581 0.23745328 0.35065067 prediction 0.489495440086807 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403679 chr19:54403681 nonsynonymous SNV 0.981 2 23 hm5C_associated_SNPs_67168 0 0 0 0 2 PRKCG chr19:54403673 3'AG 54403673 Downstream 9bp
chr19 54403681 54403681 1 + C T COAD 54403679 + 54403659 54403699 41 ACCCCGTCCTCCAGGTTCTACGCGGCAGAAATCGCTATCGG ACCCCGTCCTCCAGGTTCTACGTGGCAGAAATCGCTATCGG < 41bp 0.770868585680985 0.526120865637581 0.23745328 0.35065067 prediction 0.489495440086807 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403679 chr19:54403681 nonsynonymous SNV 0.981 2 23 hm5C_associated_SNPs_67168 0 0 0 0 2 PRKCG chr19:54403735 5'GT 54403735 Upstream 55bp
chr11 111385713 111385713 1 + G C HNSC 111385709 + 111385689 111385729 41 CAGTCAGCGTCTGCCGGTGGCGCGGCCCAGGAGGAGCAGAG CAGTCAGCGTCTGCCGGTGGCGCGCCCCAGGAGGAGCAGAG < 41bp 0.818735991142651 0.573990219038114 0.88408077 0.371826 prediction 0.489491544209074 Functional Loss - C11orf88 ENSG00000183644 CDS Human protein_coding chr11:111385709 chr11:111385713 synonymous SNV . 0 25 hm5C_associated_SNPs_67169 0 0 0 0 1 C11orf88 chr11:111385735 5'GT 111385735 Upstream 23bp
chr15 23261971 23261971 1 + C T rs544684261 23261969 + 23261949 23261989 41 AAGAGAGGATTCAGGAGCAGCACAAGAGCCTTCAGCAGCTG AAGAGAGGATTCAGGAGCAGCATAAGAGCCTTCAGCAGCTG < 41bp 0.794282845267945 0.54954819149825 0.32842678 0.3075005 prediction 0.489469307539389 Functional Loss - GOLGA8IP ENSG00000153666 CDS Human other chr15:23261969 chr15:23261971 synonymous SNV . 0 23 hm5C_associated_SNPs_67176 0 0 0 0 1 GOLGA8IP chr15:23262019 5'GT 23262019 Upstream 49bp
chr20 44639169 44639169 1 + C T SKCM 44639167 + 44639147 44639187 41 CCGCGGGCGGTGATTGACGACGCCTTTGCCCGCGCCTTCGC CCGCGGGCGGTGATTGACGACGTCTTTGCCCGCGCCTTCGC < 41bp 0.744729826511793 0.468565906594727 0.09445077 0.23404312 prediction 0.489459653023585 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44639167 chr20:44639169 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_67177 0 0 1 0 1 MMP9 chr20:44639122 3'AG 44639122 Downstream 48bp
chr16 2510154 2510154 1 + G C rs186033526 2510153 + 2510133 2510173 41 CGCCGCCGCCTTCATGCTGCCGGCGGGCTGCTCGCGCCGGT CGCCGCCGCCTTCATGCTGCCCGCGGGCTGCTCGCGCCGGT < 41bp 0.863145020357444 0.61842580417258 0.8622667 0.32594597 prediction 0.489438432369729 Functional Loss - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2510153 chr16:2510154 synonymous SNV . 0 22 hm5C_associated_SNPs_67178 0 0 1 0 1 C16orf59 chr16:2510171 5'GT 2510171 Upstream 18bp
chr1 23191454 23191454 1 + G A SKCM 23191451 + 23191431 23191471 41 GTGGACCCCTCCCCGCGACTCCGGAGGCCGAGAGGACCTCG GTGGACCCCTCCCCGCGACTCCGAAGGCCGAGAGGACCTCG < 41bp 0.747814735401786 0.503104246109971 0.3569539 0.19783545 prediction 0.489420978583631 Functional Loss - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23191451 chr1:23191454 nonsynonymous SNV 0.343 4 24 hm5C_associated_SNPs_67181 0 0 0 0 1 EPHB2 chr1:23191370 3'AG 23191370 Downstream 85bp
chr4 177098792 177098792 1 + G T LUSC 177098789 + 177098769 177098809 41 TATTCACATTTCTTGTCTTACGGGATTAAAAATCCAGGTAA TATTCACATTTCTTGTCTTACGGTATTAAAAATCCAGGTAA < 41bp 0.744710390222823 0.396482965465662 0.8865764 0.19505659 prediction 0.489420780445647 Functional Loss - WDR17 ENSG00000150627 CDS Human protein_coding chr4:177098789 chr4:177098792 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_67182 0 0 0 0 1 WDR17 chr4:177098805 5'GT 177098805 Upstream 14bp
chr10 11911548 11911548 1 + G A HNSC 11911545 + 11911525 11911565 41 ATGCTGAGACTCCTCCACCTCCAGACCCCCCGGCTCCCGAG ATGCTGAGACTCCTCCACCTCCAAACCCCCCGGCTCCCGAG < 41bp 0.758558013324138 0.513852979268542 0.9373468 0.9089687 prediction 0.489410068111193 Functional Loss - PROSER2 ENSG00000148426 CDS Human protein_coding chr10:11911545 chr10:11911548 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_67183 0 0 0 0 1 PROSER2 chr10:11911489 3'AG 11911489 Downstream 60bp
chr13 113975948 113975948 1 + G A COAD 113975945 + 113975925 113975965 41 GGCAATTCCTACAAGTGCAACGCGGAGGAGCACGTCCGTGT GGCAATTCCTACAAGTGCAACGCAGAGGAGCACGTCCGTGT < 41bp 0.747970503400806 0.50326823492949 0.20390186 0.07303974 prediction 0.489404536942632 Functional Loss - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113975945 chr13:113975948 synonymous SNV . 0 24 hm5C_associated_SNPs_67184 0 0 1 0 2 LAMP1 chr13:113975872 3'AG 113975872 Downstream 77bp
chr13 113975948 113975948 1 + G A COAD 113975945 + 113975925 113975965 41 GGCAATTCCTACAAGTGCAACGCGGAGGAGCACGTCCGTGT GGCAATTCCTACAAGTGCAACGCAGAGGAGCACGTCCGTGT < 41bp 0.747970503400806 0.50326823492949 0.20390186 0.07303974 prediction 0.489404536942632 Functional Loss - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113975945 chr13:113975948 synonymous SNV . 0 24 hm5C_associated_SNPs_67184 0 0 1 0 2 LAMP1 chr13:113976042 5'GT 113976042 Upstream 95bp
chr2 26678055 26678055 1 + A T STAD 26678051 + 26678031 26678071 41 TGGAAAACAGTTCTCTGGAGCAGCAGAACACAGAGCTGCAG TGGAAAACAGTTCTCTGGAGCAGCTGAACACAGAGCTGCAG < 41bp 0.744699159413105 0.416119657934184 0.412639 0.7165655 prediction 0.48939831882621 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26678051 chr2:26678055 nonsynonymous SNV 0.982 3 25 hm5C_associated_SNPs_67185 0 0 0 0 2 DRC1 chr2:26677999 3'AG 26677999 Downstream 57bp
chr2 26678055 26678055 1 + A T STAD 26678051 + 26678031 26678071 41 TGGAAAACAGTTCTCTGGAGCAGCAGAACACAGAGCTGCAG TGGAAAACAGTTCTCTGGAGCAGCTGAACACAGAGCTGCAG < 41bp 0.744699159413105 0.416119657934184 0.412639 0.7165655 prediction 0.48939831882621 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26678051 chr2:26678055 nonsynonymous SNV 0.982 3 25 hm5C_associated_SNPs_67185 0 0 0 0 2 DRC1 chr2:26678101 5'GT 26678101 Upstream 47bp
chr8 99139954 99139954 1 + G A COAD 99139951 + 99139931 99139971 41 AGGGAGGATGGAAAGCAGGTCCCGAGGGCACGTCTCAGGAG AGGGAGGATGGAAAGCAGGTCCCAAGGGCACGTCTCAGGAG < 41bp 0.744697102415403 0.499949027643618 0.12509933 0.05125609 prediction 0.489394204830806 Functional Loss - POP1 ENSG00000104356 CDS Human protein_coding chr8:99139951 chr8:99139954 nonsynonymous SNV 0.642 0 24 hm5C_associated_SNPs_67186 0 0 0 0 1 POP1 chr8:99139990 5'GT 99139990 Upstream 37bp
chr11 63071614 63071614 1 + G T LUSC 63071612 + 63071592 63071632 41 TGCGTGTGGCTTTGGCATGTCTGGGAATCGGCTGTTCTGCT TGCGTGTGGCTTTGGCATGTCTTGGAATCGGCTGTTCTGCT < 41bp 0.744684817275145 0.39869332293329 0.60979825 0.19214362 prediction 0.48936963455029 Functional Loss - SLC22A10 ENSG00000184999 CDS Human protein_coding chr11:63071612 chr11:63071614 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_67190 0 0 0 3 2 SLC22A10 chr11:63071580 3'AG 63071580 Downstream 35bp
chr11 63071614 63071614 1 + G T LUSC 63071612 + 63071592 63071632 41 TGCGTGTGGCTTTGGCATGTCTGGGAATCGGCTGTTCTGCT TGCGTGTGGCTTTGGCATGTCTTGGAATCGGCTGTTCTGCT < 41bp 0.744684817275145 0.39869332293329 0.60979825 0.19214362 prediction 0.48936963455029 Functional Loss - SLC22A10 ENSG00000184999 CDS Human protein_coding chr11:63071612 chr11:63071614 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_67190 0 0 0 3 2 SLC22A10 chr11:63071688 5'GT 63071688 Upstream 75bp
chr3 57843845 57843845 1 + C T COAD 57843843 + 57843823 57843863 41 AGATGAAGATAGACTCTTATCACGGTTAGAAGTTATGGGAA AGATGAAGATAGACTCTTATCATGGTTAGAAGTTATGGGAA < 41bp 0.791457389526066 0.546780103443753 0.7941593 0.78873044 prediction 0.489354572164627 Functional Loss - SLMAP ENSG00000163681 CDS Human protein_coding chr3:57843843 chr3:57843845 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_67193 0 0 1 0 2 SLMAP chr3:57843815 3'AG 57843815 Downstream 31bp
chr3 57843845 57843845 1 + C T COAD 57843843 + 57843823 57843863 41 AGATGAAGATAGACTCTTATCACGGTTAGAAGTTATGGGAA AGATGAAGATAGACTCTTATCATGGTTAGAAGTTATGGGAA < 41bp 0.791457389526066 0.546780103443753 0.7941593 0.78873044 prediction 0.489354572164627 Functional Loss - SLMAP ENSG00000163681 CDS Human protein_coding chr3:57843843 chr3:57843845 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_67193 0 0 1 0 2 SLMAP chr3:57843886 5'GT 57843886 Upstream 42bp
chr6 36652272 36652272 1 + G T BLCA 36652270 + 36652250 36652290 41 GGAGCAGGCTGAAGGGTCCCCAGGTGGACCTGGAGACTCTC GGAGCAGGCTGAAGGGTCCCCATGTGGACCTGGAGACTCTC < 41bp 0.744663457735859 0.421861660078649 0.92774296 0.4676709 prediction 0.489326915471719 Functional Loss - CDKN1A ENSG00000124762 CDS Human protein_coding chr6:36652270 chr6:36652272 nonsynonymous SNV 0.967 1 23 hm5C_associated_SNPs_67196 0 0 1 0 1 CDKN1A chr6:36652323 5'GT 36652323 Upstream 52bp
chr19 3765212 3765212 1 + T C COAD 3765211 + 3765191 3765231 41 GTGCAGTGACCAGCGAGGCCCTCAAGGACCCCGACGTATGC GTGCAGTGACCAGCGAGGCCCCCAAGGACCCCGACGTATGC < 41bp 0.80185579600718 0.557194723314527 0.5270946 0.224484 prediction 0.489322145385306 Functional Loss - MRPL54 ENSG00000183617 CDS Human protein_coding chr19:3765211 chr19:3765212 nonsynonymous SNV 0.337 3 22 hm5C_associated_SNPs_67198 0 0 1 0 1 MRPL54 chr19:3765164 3'AG 3765164 Downstream 49bp
chr20 43566728 43566728 1 + G A HNSC 43566725 + 43566705 43566745 41 AGCGTCTCTACCCCCTTATCCATGATGTCCACACCCAGCTG AGCGTCTCTACCCCCTTATCCATAATGTCCACACCCAGCTG < 41bp 0.768305565683187 0.523657559629713 0.08977181 0.060720205 prediction 0.489296012106946 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43566725 chr20:43566728 nonsynonymous SNV 0.078 0 24 hm5C_associated_SNPs_67199 0 0 1 1 2 PABPC1L chr20:43566686 3'AG 43566686 Downstream 43bp
chr20 43566728 43566728 1 + G A HNSC 43566725 + 43566705 43566745 41 AGCGTCTCTACCCCCTTATCCATGATGTCCACACCCAGCTG AGCGTCTCTACCCCCTTATCCATAATGTCCACACCCAGCTG < 41bp 0.768305565683187 0.523657559629713 0.08977181 0.060720205 prediction 0.489296012106946 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43566725 chr20:43566728 nonsynonymous SNV 0.078 0 24 hm5C_associated_SNPs_67199 0 0 1 1 2 PABPC1L chr20:43566702 3'AG 43566702 Downstream 27bp
chr22 50962824 50962824 1 - C G LUAD 50962825 - 50962805 50962845 41 GATCCATGCTGCTGCTGACTCGGAGCCCCACAGCTTGGCAC GATCCATGCTGCTGCTGACTCCGAGCCCCACAGCTTGGCAC < 41bp 0.851495154005746 0.60684912185421 0.90619576 0.60979545 prediction 0.489292064303073 Functional Loss - SCO2 ENSG00000130489 CDS Human antisense chr22:50962825 chr22:50962824 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_67200 0 0 1 0 1 SCO2;NCAPH2 chr22:50962853 3'AG 50962853 Downstream 30bp
chr1 223940636 223940636 1 + G T LUAD 223940633 + 223940613 223940653 41 AACTGGAGGCGGGGCTCCACCGCGGGAGGTTGCAGGAACTA AACTGGAGGCGGGGCTCCACCGCTGGAGGTTGCAGGAACTA < 41bp 0.91086202597746 0.666218365128702 0.89389586 0.32909894 prediction 0.489287321697517 Functional Loss - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223940633 chr1:223940636 synonymous SNV . 0 24 hm5C_associated_SNPs_67202 0 0 1 0 1 CAPN2 chr1:223940658 5'GT 223940658 Upstream 23bp
chr14 51352581 51352581 1 + C T UCEC 51352579 + 51352559 51352599 41 AGGCAAGAAGTGGCATCACTCCCGTGTGTCTCTGGGGCCAC AGGCAAGAAGTGGCATCACTCCTGTGTGTCTCTGGGGCCAC < 41bp 0.803360388358324 0.558725539630008 0.40465343 0.15782592 prediction 0.489269697456631 Functional Loss - ABHD12B ENSG00000131969 CDS Human protein_coding chr14:51352579 chr14:51352581 synonymous SNV . 0 23 hm5C_associated_SNPs_67203 0 0 0 0 1 ABHD12B chr14:51352484 3'AG 51352484 Downstream 98bp
chr16 31498858 31498858 1 + C T LUAD 31498856 + 31498836 31498876 41 GGCCTTGCCCGGCAGCCTTCCACGAGGTGGGCGGGTATTCG GGCCTTGCCCGGCAGCCTTCCATGAGGTGGGCGGGTATTCG < 41bp 0.788392310866574 0.543761862424913 0.6994888 0.7844235 prediction 0.489260896883322 Functional Loss - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31498856 chr16:31498858 synonymous SNV . 0 23 hm5C_associated_SNPs_67205 0 0 0 0 1 SLC5A2 chr16:31498851 3'AG 31498851 Downstream 8bp
chr7 136554028 136554028 1 + G C rs141428785 136554027 + 136554007 136554047 41 GATCAAGGGAGAAAGAGAACCGGCAGCTGGCCTCGGACTCT GATCAAGGGAGAAAGAGAACCCGCAGCTGGCCTCGGACTCT < 41bp 0.787534780282403 0.542907464795089 0.8137088 0.31879914 prediction 0.489254630974628 Functional Loss - CHRM2 ENSG00000234352 ncRNA_intronic Human antisense chr7:136554027 chr7:136554028 . . 0 22 hm5C_associated_SNPs_67206 0 0 0 0 1 CHRM2 chr7:136554008 3'AG 136554008 Downstream 21bp
chr3 37555294 37555294 1 + T C UCEC 37555293 + 37555273 37555313 41 CCTCCTTGTGCGCAGTTGACCTGAATGGGGACGGCCTCTCT CCTCCTTGTGCGCAGTTGACCCGAATGGGGACGGCCTCTCT < 41bp 0.746246971713063 0.501625782591295 0.29925233 0.22863913 prediction 0.489242378243536 Functional Loss - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37555293 chr3:37555294 nonsynonymous SNV 0.959 4 22 hm5C_associated_SNPs_67208 0 0 0 0 2 ITGA9 chr3:37555254 3'AG 37555254 Downstream 41bp
chr3 37555294 37555294 1 + T C UCEC 37555293 + 37555273 37555313 41 CCTCCTTGTGCGCAGTTGACCTGAATGGGGACGGCCTCTCT CCTCCTTGTGCGCAGTTGACCCGAATGGGGACGGCCTCTCT < 41bp 0.746246971713063 0.501625782591295 0.29925233 0.22863913 prediction 0.489242378243536 Functional Loss - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37555293 chr3:37555294 nonsynonymous SNV 0.959 4 22 hm5C_associated_SNPs_67208 0 0 0 0 2 ITGA9 chr3:37555391 5'GT 37555391 Upstream 98bp
chr16 89284292 89284292 1 + G C rs188881219 89284291 + 89284271 89284311 41 GCCGCCGCTCGCGGTAGACCCGGGCAGCGCTTCCATTCCGC GCCGCCGCTCGCGGTAGACCCCGGCAGCGCTTCCATTCCGC < 41bp 0.808438022638834 0.563820851460843 0.90627056 0.5346895 prediction 0.489234342355981 Functional Loss - ZNF778 ENSG00000170100 UTR5 Human protein_coding chr16:89284291 chr16:89284292 . . 0 22 hm5C_associated_SNPs_67210 0 0 1 0 1 ZNF778 chr16:89284318 5'GT 89284318 Upstream 27bp
chr1 16383397 16383397 1 + C T UCEC 16383395 + 16383375 16383415 41 AATTTCCAACCTGACAAATCCGCCAGCCCCAAAGTGAGCCG AATTTCCAACCTGACAAATCCGTCAGCCCCAAAGTGAGCCG < 41bp 0.806871919551305 0.562257805604232 0.6036001 0.21221018 prediction 0.489228227894145 Functional Loss - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16383395 chr1:16383397 nonsynonymous SNV 0.281 2 23 hm5C_associated_SNPs_67212 0 0 0 0 1 CLCNKB chr1:16383364 3'AG 16383364 Downstream 34bp
chr17 19318162 19318162 1 + G A SKCM 19318159 + 19318139 19318179 41 TTGCTGCCTCTTGCCTGCCCCAGGGAGGCGGCGGATGAACC TTGCTGCCTCTTGCCTGCCCCAGAGAGGCGGCGGATGAACC < 41bp 0.750712434126558 0.506100645676005 0.9005904 0.69508874 prediction 0.489223576901106 Functional Loss - RNF112 ENSG00000128482 CDS Human protein_coding chr17:19318159 chr17:19318162 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_67213 0 0 0 0 3 RNF112 chr17:19318083 3'AG 19318083 Downstream 80bp
chr17 19318162 19318162 1 + G A SKCM 19318159 + 19318139 19318179 41 TTGCTGCCTCTTGCCTGCCCCAGGGAGGCGGCGGATGAACC TTGCTGCCTCTTGCCTGCCCCAGAGAGGCGGCGGATGAACC < 41bp 0.750712434126558 0.506100645676005 0.9005904 0.69508874 prediction 0.489223576901106 Functional Loss - RNF112 ENSG00000128482 CDS Human protein_coding chr17:19318159 chr17:19318162 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_67213 0 0 0 0 3 RNF112 chr17:19318200 5'GT 19318200 Upstream 39bp
chr17 19318162 19318162 1 + G A SKCM 19318159 + 19318139 19318179 41 TTGCTGCCTCTTGCCTGCCCCAGGGAGGCGGCGGATGAACC TTGCTGCCTCTTGCCTGCCCCAGAGAGGCGGCGGATGAACC < 41bp 0.750712434126558 0.506100645676005 0.9005904 0.69508874 prediction 0.489223576901106 Functional Loss - RNF112 ENSG00000128482 CDS Human protein_coding chr17:19318159 chr17:19318162 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_67213 0 0 0 0 3 RNF112 chr17:19318204 5'GT 19318204 Upstream 43bp
chrX 65413397 65413397 1 + G T LUAD 65413395 + 65413375 65413415 41 AGCCGAATTGGGGGCACTTACTGGAAAGTGCGATATGAAGC AGCCGAATTGGGGGCACTTACTTGAAAGTGCGATATGAAGC < 41bp 0.887187188836753 0.64258508957285 0.5160386 0.113435894 prediction 0.489204198527806 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65413395 chrX:65413397 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_67218 0 0 0 0 2 HEPH chrX:65413344 3'AG 65413344 Downstream 54bp
chrX 65413397 65413397 1 + G T LUAD 65413395 + 65413375 65413415 41 AGCCGAATTGGGGGCACTTACTGGAAAGTGCGATATGAAGC AGCCGAATTGGGGGCACTTACTTGAAAGTGCGATATGAAGC < 41bp 0.887187188836753 0.64258508957285 0.5160386 0.113435894 prediction 0.489204198527806 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65413395 chrX:65413397 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_67218 0 0 0 0 2 HEPH chrX:65413480 5'GT 65413480 Upstream 84bp
chr1 44442294 44442294 1 + G T TGCT 44442292 + 44442272 44442312 41 TGTGAGGCTGTGGCCATCTACGGCATCATCATGGCAATTGT TGTGAGGCTGTGGCCATCTACGTCATCATCATGGCAATTGT < 41bp 0.88474278251837 0.640141427184635 0.17653033 0.033818126 prediction 0.489202710667469 Functional Loss - ATP6V0B ENSG00000117410 CDS Human protein_coding chr1:44442292 chr1:44442294 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_67219 0 0 1 0 2 ATP6V0B chr1:44442262 3'AG 44442262 Downstream 33bp
chr1 44442294 44442294 1 + G T TGCT 44442292 + 44442272 44442312 41 TGTGAGGCTGTGGCCATCTACGGCATCATCATGGCAATTGT TGTGAGGCTGTGGCCATCTACGTCATCATCATGGCAATTGT < 41bp 0.88474278251837 0.640141427184635 0.17653033 0.033818126 prediction 0.489202710667469 Functional Loss - ATP6V0B ENSG00000117410 CDS Human protein_coding chr1:44442292 chr1:44442294 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_67219 0 0 1 0 2 ATP6V0B chr1:44442331 5'GT 44442331 Upstream 38bp
chrX 41205597 41205597 1 + G T SARC 41205595 + 41205575 41205615 41 GCATCCATGGAGACCGTTCTCAGAGGGATAGAGAAGAGGCC GCATCCATGGAGACCGTTCTCATAGGGATAGAGAAGAGGCC < 41bp 0.744599637413255 0.399528963892501 0.93974423 0.85290706 prediction 0.48919927482651 Functional Loss - DDX3X ENSG00000215301 CDS Human protein_coding chrX:41205595 chrX:41205597 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_67220 0 0 1 0 1 DDX3X chrX:41205663 5'GT 41205663 Upstream 67bp
chr22 37332659 37332659 1 + G A LUAD 37332656 + 37332636 37332676 41 ACTAGCGGGAGTCCCCCACACCAGGGGCCGTGGGGCAGCCG ACTAGCGGGAGTCCCCCACACCAAGGGCCGTGGGGCAGCCG < 41bp 0.744599583181545 0.4933110574712 0.8996409 0.2499578 prediction 0.489199166363089 Functional Loss - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37332656 chr22:37332659 synonymous SNV . 0 24 hm5C_associated_SNPs_67221 0 0 0 0 2 CSF2RB chr22:37332591 3'AG 37332591 Downstream 69bp
chr22 37332659 37332659 1 + G A LUAD 37332656 + 37332636 37332676 41 ACTAGCGGGAGTCCCCCACACCAGGGGCCGTGGGGCAGCCG ACTAGCGGGAGTCCCCCACACCAAGGGCCGTGGGGCAGCCG < 41bp 0.744599583181545 0.4933110574712 0.8996409 0.2499578 prediction 0.489199166363089 Functional Loss - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37332656 chr22:37332659 synonymous SNV . 0 24 hm5C_associated_SNPs_67221 0 0 0 0 2 CSF2RB chr22:37332694 5'GT 37332694 Upstream 36bp
chr2 29240775 29240775 1 + G T ESCA 29240773 + 29240753 29240793 41 GCCAGCCGGGCCTCCCTGCCCAGCATCCCCATCAGCCGGCA GCCAGCCGGGCCTCCCTGCCCATCATCCCCATCAGCCGGCA < 41bp 0.898152860500128 0.653554269216927 0.33482122 0.11802009 prediction 0.489197182566402 Functional Loss - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29240773 chr2:29240775 nonsynonymous SNV 0.632 1 23 hm5C_associated_SNPs_67222 0 0 0 0 1 TOGARAM2 chr2:29240822 5'GT 29240822 Upstream 48bp
chr1 32671293 32671293 1 + A T BLCA 32671289 + 32671269 32671309 41 GGCAGTTGGCGCCCATGGAGCCAGAGCTGCTGGTTCGGAAG GGCAGTTGGCGCCCATGGAGCCAGTGCTGCTGGTTCGGAAG < 41bp 0.744595964964632 0.456656733684887 0.6932945 0.38727567 prediction 0.489191929929264 Functional Loss - IQCC ENSG00000160051 CDS Human protein_coding chr1:32671289 chr1:32671293 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_67223 0 0 1 0 1 IQCC chr1:32671324 5'GT 32671324 Upstream 32bp
chr11 34668199 34668199 1 + T C LUAD 34668198 + 34668178 34668218 41 CAGGGACGGCGGGGCAGCTCCTCTACAGCAACTTGCAGCAT CAGGGACGGCGGGGCAGCTCCCCTACAGCAACTTGCAGCAT < 41bp 0.744594150360262 0.472241210663888 0.9293552 0.21834669 prediction 0.489188300720524 Functional Loss - EHF ENSG00000135373 CDS Human protein_coding chr11:34668198 chr11:34668199 nonsynonymous SNV 0.934 4 22 hm5C_associated_SNPs_67224 0 0 0 0 1 EHF chr11:34668231 5'GT 34668231 Upstream 33bp
chr12 96350678 96350678 1 + C T COAD 96350676 + 96350656 96350696 41 AGATGCTGCGCGTGATTGAGCGCGCCCGGCGGGAGCTGGAC AGATGCTGCGCGTGATTGAGCGTGCCCGGCGGGAGCTGGAC < 41bp 0.784922849349638 0.540329933144646 0.33236256 0.1749847 prediction 0.489185832409984 Functional Loss - AMDHD1 ENSG00000139344 CDS Human protein_coding chr12:96350676 chr12:96350678 synonymous SNV . 0 23 hm5C_associated_SNPs_67225 0 0 1 0 1 AMDHD1 chr12:96350740 5'GT 96350740 Upstream 63bp
chr17 7906989 7906989 1 + G A BLCA 7906986 + 7906966 7907006 41 CTGTCCACGGCACTCAGGGCCCGGGGCCTGCCTGTCGCCTC CTGTCCACGGCACTCAGGGCCCGAGGCCTGCCTGTCGCCTC < 41bp 0.744587295921654 0.495554566751068 0.6199618 0.27151197 prediction 0.489174591843307 Functional Loss - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7906986 chr17:7906989 synonymous SNV . 0 24 hm5C_associated_SNPs_67227 0 0 0 0 1 GUCY2D chr17:7907086 5'GT 7907086 Upstream 98bp
chr1 46033700 46033700 1 + T C STAD 46033699 + 46033679 46033719 41 AATGCTGATGGGACTATATGCTACGACTCCACCCACTACAA AATGCTGATGGGACTATATGCCACGACTCCACCCACTACAA < 41bp 0.758005375745513 0.513423967052912 0.05785033 0.027264714 prediction 0.489162817385202 Functional Loss - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46033699 chr1:46033700 nonsynonymous SNV 0.434 1 22 hm5C_associated_SNPs_67231 0 0 1 1 1 AKR1A1 chr1:46033654 3'AG 46033654 Downstream 47bp
chr6 7862664 7862664 1 + G T LUAD 7862662 + 7862642 7862682 41 CCACCAGGTCAGCCTCCAGCCGGCGCCGACAACAGAGTCGT CCACCAGGTCAGCCTCCAGCCGTCGCCGACAACAGAGTCGT < 41bp 0.744579755665362 0.387658009238415 0.895598 0.4262563 prediction 0.489159511330724 Functional Loss - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7862662 chr6:7862664 synonymous SNV . 0 23 hm5C_associated_SNPs_67232 0 0 0 0 1 BMP6 chr6:7862731 5'GT 7862731 Upstream 68bp
chr7 128457885 128457885 1 + G T LUSC 128457883 + 128457863 128457903 41 GTGGTCATCTCGGCTTTGCTCTGGTGCTGGTGGGCTGAGAC GTGGTCATCTCGGCTTTGCTCTTGTGCTGGTGGGCTGAGAC < 41bp 0.744579389039359 0.403604310433068 0.7907263 0.30230337 prediction 0.489158778078718 Functional Loss - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128457883 chr7:128457885 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_67233 0 0 1 0 2 CCDC136 chr7:128457812 3'AG 128457812 Downstream 74bp
chr7 128457885 128457885 1 + G T LUSC 128457883 + 128457863 128457903 41 GTGGTCATCTCGGCTTTGCTCTGGTGCTGGTGGGCTGAGAC GTGGTCATCTCGGCTTTGCTCTTGTGCTGGTGGGCTGAGAC < 41bp 0.744579389039359 0.403604310433068 0.7907263 0.30230337 prediction 0.489158778078718 Functional Loss - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128457883 chr7:128457885 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_67233 0 0 1 0 2 CCDC136 chr7:128457918 5'GT 128457918 Upstream 34bp
chr10 126301921 126301921 1 + G C BLCA 126301917 + 126301897 126301937 41 GTGGACCTGCTGCTGCAGCACGCCGACAAGTGATGGCCTCC GTGGACCTGCTGCTGCAGCACGCCCACAAGTGATGGCCTCC < 41bp 0.744572982733444 0.461664398275519 0.57870126 0.26325375 prediction 0.489145965466888 Functional Loss - LHPP ENSG00000107902 CDS Human protein_coding chr10:126301917 chr10:126301921 nonsynonymous SNV 0.456 0 25 hm5C_associated_SNPs_67234 0 0 0 0 1 LHPP chr10:126301833 3'AG 126301833 Downstream 89bp
chr12 119773055 119773055 1 + C T STAD 119773053 + 119773033 119773073 41 GCTGTCCGGCCCTTTTATGCCTCGGAGAACCTAAGGCAGGT GCTGTCCGGCCCTTTTATGCCTTGGAGAACCTAAGGCAGGT < 41bp 0.759492648525155 0.514927440886587 0.4241288 0.2800851 prediction 0.489130415277136 Functional Loss - CCDC60 ENSG00000183273 CDS Human protein_coding chr12:119773053 chr12:119773055 nonsynonymous SNV 0.007 1 23 hm5C_associated_SNPs_67236 0 0 0 0 1 CCDC60 chr12:119773071 5'GT 119773071 Upstream 17bp
chr16 55562473 55562473 1 + C T CESC 55562471 + 55562451 55562491 41 TGGGTTACCTTCTATGGTATCTCGAAATGAGAATGCACAAG TGGGTTACCTTCTATGGTATCTTGAAATGAGAATGCACAAG < 41bp 0.820223180271429 0.575661787371045 0.91791606 0.4234689 prediction 0.489122785800769 Functional Loss - LPCAT2 ENSG00000087253 CDS Human protein_coding chr16:55562471 chr16:55562473 stopgain 0.938 1 23 hm5C_associated_SNPs_67237 0 0 0 0 1 LPCAT2 chr16:55562506 5'GT 55562506 Upstream 34bp
chr16 28909708 28909708 1 + G A UCEC 28909705 + 28909685 28909725 41 GCGCTGCTTGGCCCTGGCCACCCGGGACACCCCCCCGAAGC GCGCTGCTTGGCCCTGGCCACCCAGGACACCCCCCCGAAGC < 41bp 0.751494580090696 0.506948546448232 0.3417061 0.055903763 prediction 0.489092067284927 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28909705 chr16:28909708 nonsynonymous SNV 0.796 2 24 hm5C_associated_SNPs_67242 0 0 1 0 1 ATP2A1 chr16:28909772 5'GT 28909772 Upstream 65bp
chr10 4877979 4877979 1 + C T UCEC 4877977 + 4877957 4877997 41 AACATGGTTATTCCCAGTGACACGGACTTCCTGGACACGTG AACATGGTTATTCCCAGTGACATGGACTTCCTGGACACGTG < 41bp 0.758056006186334 0.513514655815697 0.23198381 0.20608932 prediction 0.489082700741275 Functional Loss - AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4877977 chr10:4877979 nonsynonymous SNV 0.034 4 23 hm5C_associated_SNPs_67245 0 0 1 0 1 AKR1E2 chr10:4878001 5'GT 4878001 Upstream 23bp
chr3 50219807 50219807 1 + C T STAD 50219805 + 50219785 50219825 41 GGAAAGCAGACAGCCATGCGCACGGATCAGTACAACTCCCG GGAAAGCAGACAGCCATGCGCATGGATCAGTACAACTCCCG < 41bp 0.75729809404522 0.512762633843976 0.1961267 0.12025085 prediction 0.489070920402489 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50219805 chr3:50219807 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_67247 0 0 0 0 2 SEMA3F chr3:50219717 3'AG 50219717 Downstream 91bp
chr3 50219807 50219807 1 + C T STAD 50219805 + 50219785 50219825 41 GGAAAGCAGACAGCCATGCGCACGGATCAGTACAACTCCCG GGAAAGCAGACAGCCATGCGCATGGATCAGTACAACTCCCG < 41bp 0.75729809404522 0.512762633843976 0.1961267 0.12025085 prediction 0.489070920402489 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50219805 chr3:50219807 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_67247 0 0 0 0 2 SEMA3F chr3:50219836 5'GT 50219836 Upstream 30bp
chr19 3746874 3746874 1 + G T COAD 3746872 + 3746852 3746892 41 CCATCTGGACGGCGGAAGATCAGGTACTGCCGCGGTGTGGG CCATCTGGACGGCGGAAGATCATGTACTGCCGCGGTGTGGG < 41bp 0.74453420912901 0.387932595849765 0.89545405 0.17775652 prediction 0.489068418258019 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3746872 chr19:3746874 nonsynonymous SNV 0.830 1 23 hm5C_associated_SNPs_67248 0 0 0 0 1 TJP3 chr19:3746874 5'GT 3746874 Upstream 1bp
chr14 100405552 100405552 1 + C T UCEC 100405550 + 100405530 100405570 41 TTAGGAGTGTGGCCAGAAGGCTCGGACGGAACCGACATCAA TTAGGAGTGTGGCCAGAAGGCTTGGACGGAACCGACATCAA < 41bp 0.824169973973126 0.579650392741097 0.2909462 0.27500784 prediction 0.489039162464058 Functional Loss - EML1 ENSG00000066629 CDS Human protein_coding chr14:100405550 chr14:100405552 nonsynonymous SNV 0.470 3 23 hm5C_associated_SNPs_67251 0 0 0 0 1 EML1 chr14:100405534 3'AG 100405534 Downstream 19bp
chr1 168037605 168037605 1 + C T UCEC 168037603 + 168037583 168037623 41 ACTTGCCTTGTAGGTTATAACTCGAAACGAACTCATGCTGG ACTTGCCTTGTAGGTTATAACTTGAAACGAACTCATGCTGG < 41bp 0.832786279021721 0.588285741651077 0.91039443 0.17004073 prediction 0.489001074741288 Functional Loss - DCAF6 ENSG00000143164 CDS Human protein_coding chr1:168037603 chr1:168037605 stopgain 0.998 0 23 hm5C_associated_SNPs_67253 0 0 1 0 2 DCAF6 chr1:168037596 3'AG 168037596 Downstream 10bp
chr1 168037605 168037605 1 + C T UCEC 168037603 + 168037583 168037623 41 ACTTGCCTTGTAGGTTATAACTCGAAACGAACTCATGCTGG ACTTGCCTTGTAGGTTATAACTTGAAACGAACTCATGCTGG < 41bp 0.832786279021721 0.588285741651077 0.91039443 0.17004073 prediction 0.489001074741288 Functional Loss - DCAF6 ENSG00000143164 CDS Human protein_coding chr1:168037603 chr1:168037605 stopgain 0.998 0 23 hm5C_associated_SNPs_67253 0 0 1 0 2 DCAF6 chr1:168037701 5'GT 168037701 Upstream 97bp
chr20 42089177 42089177 1 + C T UCEC 42089175 + 42089155 42089195 41 GTCTCGATCTAGAAGACGGTCACGAAGTAGGAGTCGCAGGA GTCTCGATCTAGAAGACGGTCATGAAGTAGGAGTCGCAGGA < 41bp 0.830706783200154 0.586209235872685 0.33740276 0.4413712 prediction 0.488995094654938 Functional Loss - SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089175 chr20:42089177 stopgain 1.000 1 23 hm5C_associated_SNPs_67255 0 0 1 0 2 SRSF6 chr20:42089155 3'AG 42089155 Downstream 23bp
chr20 42089177 42089177 1 + C T UCEC 42089175 + 42089155 42089195 41 GTCTCGATCTAGAAGACGGTCACGAAGTAGGAGTCGCAGGA GTCTCGATCTAGAAGACGGTCATGAAGTAGGAGTCGCAGGA < 41bp 0.830706783200154 0.586209235872685 0.33740276 0.4413712 prediction 0.488995094654938 Functional Loss - SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089175 chr20:42089177 stopgain 1.000 1 23 hm5C_associated_SNPs_67255 0 0 1 0 2 SRSF6 chr20:42089238 5'GT 42089238 Upstream 62bp
chr18 43247003 43247003 1 + G T COAD 43247001 + 43246981 43247021 41 GCTGCCAGTGGGAAAAGGGTCAGCAAAGCCCTCAGCTACAT GCTGCCAGTGGGAAAAGGGTCATCAAAGCCCTCAGCTACAT < 41bp 0.744497409355993 0.433402473470349 0.14621505 0.1009638 prediction 0.488994818711985 Functional Loss - SLC14A2 ENSG00000132874 CDS Human protein_coding chr18:43247001 chr18:43247003 nonsynonymous SNV 0.468 0 23 hm5C_associated_SNPs_67256 0 0 0 0 1 SLC14A2 chr18:43247059 5'GT 43247059 Upstream 57bp
chr17 43171164 43171164 1 + G C LUAD 43171163 + 43171143 43171183 41 ATGCTTTGGACCTGGGCGATCGTGGTGTGGTGAGTGGGCCC ATGCTTTGGACCTGGGCGATCCTGGTGTGGTGAGTGGGCCC < 41bp 0.7444954326932 0.427834073893264 0.90954494 0.85013336 prediction 0.4889908653864 Functional Loss - NMT1 ENSG00000136448 CDS Human protein_coding chr17:43171163 chr17:43171164 nonsynonymous SNV 0.992 0 22 hm5C_associated_SNPs_67257 0 0 1 0 1 NMT1 chr17:43171171 5'GT 43171171 Upstream 8bp
chr16 1709935 1709935 1 + G A rs200608756 1709932 + 1709912 1709952 41 CAGCCTCAGTAAGGCCCGCCCAGGAGGAGCAGTCGATGACG CAGCCTCAGTAAGGCCCGCCCAGAAGGAGCAGTCGATGACG < 41bp 0.756097700592778 0.511604367056583 0.9017111 0.33159006 prediction 0.488986667072391 Functional Loss - CRAMP1 ENSG00000007545 CDS Human protein_coding chr16:1709932 chr16:1709935 nonsynonymous SNV 0.749 3 24 hm5C_associated_SNPs_67259 0 0 1 0 1 CRAMP1 chr16:1709887 3'AG 1709887 Downstream 49bp
chr3 129233373 129233373 1 + C T rs76881473 129233371 + 129233351 129233391 41 AGCTGGGTACCCTGACCATCCGCGCCAAGCCCTTCCACGAC AGCTGGGTACCCTGACCATCCGTGCCAAGCCCTTCCACGAC < 41bp 0.752076067204293 0.507582767473379 0.2203373 0.09018263 prediction 0.488986599461828 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129233371 chr3:129233373 synonymous SNV . 0 23 hm5C_associated_SNPs_67260 1 0 0 0 1 IFT122 chr3:129233397 5'GT 129233397 Upstream 25bp
chr2 28631709 28631709 1 + G T STAD 28631707 + 28631687 28631727 41 CCAAGTGCCGGAACCGACGCCGGGAGCTGACAGAGAAGCTG CCAAGTGCCGGAACCGACGCCGTGAGCTGACAGAGAAGCTG < 41bp 0.89480530866315 0.650313012138018 0.86637366 0.38331896 prediction 0.488984593050265 Functional Loss - FOSL2 ENSG00000075426 CDS Human protein_coding chr2:28631707 chr2:28631709 synonymous SNV . 0 23 hm5C_associated_SNPs_67262 0 0 1 0 2 FOSL2 chr2:28631626 3'AG 28631626 Downstream 84bp
chr2 28631709 28631709 1 + G T STAD 28631707 + 28631687 28631727 41 CCAAGTGCCGGAACCGACGCCGGGAGCTGACAGAGAAGCTG CCAAGTGCCGGAACCGACGCCGTGAGCTGACAGAGAAGCTG < 41bp 0.89480530866315 0.650313012138018 0.86637366 0.38331896 prediction 0.488984593050265 Functional Loss - FOSL2 ENSG00000075426 CDS Human protein_coding chr2:28631707 chr2:28631709 synonymous SNV . 0 23 hm5C_associated_SNPs_67262 0 0 1 0 2 FOSL2 chr2:28631733 5'GT 28631733 Upstream 25bp
chr3 170015124 170015124 1 + A T UCEC 170015120 + 170015100 170015140 41 GGAACGATTGGGTTGTCATCCTCAAACAGGATTTGCTGATA GGAACGATTGGGTTGTCATCCTCATACAGGATTTGCTGATA < 41bp 0.744489289497701 0.413369366427498 0.75639796 0.18066576 prediction 0.488978578995401 Functional Loss - PRKCI ENSG00000163558 CDS Human protein_coding chr3:170015120 chr3:170015124 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_67264 0 0 0 0 2 PRKCI chr3:170015092 3'AG 170015092 Downstream 33bp
chr3 170015124 170015124 1 + A T UCEC 170015120 + 170015100 170015140 41 GGAACGATTGGGTTGTCATCCTCAAACAGGATTTGCTGATA GGAACGATTGGGTTGTCATCCTCATACAGGATTTGCTGATA < 41bp 0.744489289497701 0.413369366427498 0.75639796 0.18066576 prediction 0.488978578995401 Functional Loss - PRKCI ENSG00000163558 CDS Human protein_coding chr3:170015120 chr3:170015124 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_67264 0 0 0 0 2 PRKCI chr3:170015181 5'GT 170015181 Upstream 58bp
chr10 43601907 43601907 1 + G A COAD 43601904 + 43601884 43601924 41 CTGGTGAGGCGGTACACAAGCACGCTGCTCCCCGGGGACAC CTGGTGAGGCGGTACACAAGCACACTGCTCCCCGGGGACAC < 41bp 0.744487326428411 0.490238716405907 0.76866394 0.68578327 prediction 0.488974652856821 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43601904 chr10:43601907 synonymous SNV . 0 24 hm5C_associated_SNPs_67266 2 0 0 0 1 RET chr10:43601824 3'AG 43601824 Downstream 84bp
chr7 150267034 150267034 1 + A T LUAD 150267030 + 150267010 150267050 41 TATGAGCTTCAACCCCAGCACACCAGGGGCCAGTTATGGTG TATGAGCTTCAACCCCAGCACACCTGGGGCCAGTTATGGTG < 41bp 0.879584152485025 0.63509765469417 0.12348488 0.08276114 prediction 0.488972995581708 Functional Loss - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150267030 chr7:150267034 synonymous SNV . 0 25 hm5C_associated_SNPs_67267 0 0 0 0 3 GIMAP4 chr7:150266976 3'AG 150266976 Downstream 59bp
chr7 150267034 150267034 1 + A T LUAD 150267030 + 150267010 150267050 41 TATGAGCTTCAACCCCAGCACACCAGGGGCCAGTTATGGTG TATGAGCTTCAACCCCAGCACACCTGGGGCCAGTTATGGTG < 41bp 0.879584152485025 0.63509765469417 0.12348488 0.08276114 prediction 0.488972995581708 Functional Loss - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150267030 chr7:150267034 synonymous SNV . 0 25 hm5C_associated_SNPs_67267 0 0 0 0 3 GIMAP4 chr7:150267047 5'GT 150267047 Upstream 14bp
chr7 150267034 150267034 1 + A T LUAD 150267030 + 150267010 150267050 41 TATGAGCTTCAACCCCAGCACACCAGGGGCCAGTTATGGTG TATGAGCTTCAACCCCAGCACACCTGGGGCCAGTTATGGTG < 41bp 0.879584152485025 0.63509765469417 0.12348488 0.08276114 prediction 0.488972995581708 Functional Loss - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150267030 chr7:150267034 synonymous SNV . 0 25 hm5C_associated_SNPs_67267 0 0 0 0 3 GIMAP4 chr7:150267089 5'GT 150267089 Upstream 56bp
chr19 17892531 17892531 1 + G A BLCA 17892528 + 17892508 17892548 41 CCACCACCCCCAGGAGTCTCCCGGGGTCCGAGCCCTGTGGT CCACCACCCCCAGGAGTCTCCCGAGGTCCGAGCCCTGTGGT < 41bp 0.74447431695248 0.497960555836396 0.96221733 0.93810546 prediction 0.48894863390496 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17892528 chr19:17892531 synonymous SNV . 0 24 hm5C_associated_SNPs_67270 0 0 0 0 2 FCHO1 chr19:17892521 3'AG 17892521 Downstream 11bp
chr19 17892531 17892531 1 + G A BLCA 17892528 + 17892508 17892548 41 CCACCACCCCCAGGAGTCTCCCGGGGTCCGAGCCCTGTGGT CCACCACCCCCAGGAGTCTCCCGAGGTCCGAGCCCTGTGGT < 41bp 0.74447431695248 0.497960555836396 0.96221733 0.93810546 prediction 0.48894863390496 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17892528 chr19:17892531 synonymous SNV . 0 24 hm5C_associated_SNPs_67270 0 0 0 0 2 FCHO1 chr19:17892629 5'GT 17892629 Upstream 99bp
chr2 10560261 10560261 1 + G T STAD 10560259 + 10560239 10560279 41 GCGAGATGCTGGAGATCGTGCAGGTACCGGCGCCCGAGGCC GCGAGATGCTGGAGATCGTGCATGTACCGGCGCCCGAGGCC < 41bp 0.744472381366806 0.388837881379159 0.4640252 0.31257004 prediction 0.488944762733611 Functional Loss - HPCAL1 ENSG00000115756 CDS Human protein_coding chr2:10560259 chr2:10560261 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_67271 0 0 1 0 1 HPCAL1 chr2:10560261 5'GT 10560261 Upstream 1bp
chr2 238990408 238990408 1 + C T COAD 238990406 + 238990386 238990426 41 AGGCAGAGGTGGACGACATCCTCGCGGCAGTCCGCCCGACC AGGCAGAGGTGGACGACATCCTTGCGGCAGTCCGCCCGACC < 41bp 0.815662119014688 0.571191135585851 0.105163366 0.18696684 prediction 0.488941966857675 Functional Loss - SCLY ENSG00000132330 CDS Human protein_coding chr2:238990406 chr2:238990408 synonymous SNV . 0 23 hm5C_associated_SNPs_67273 0 0 1 0 2 SCLY chr2:238990350 3'AG 238990350 Downstream 59bp
chr2 238990408 238990408 1 + C T COAD 238990406 + 238990386 238990426 41 AGGCAGAGGTGGACGACATCCTCGCGGCAGTCCGCCCGACC AGGCAGAGGTGGACGACATCCTTGCGGCAGTCCGCCCGACC < 41bp 0.815662119014688 0.571191135585851 0.105163366 0.18696684 prediction 0.488941966857675 Functional Loss - SCLY ENSG00000132330 CDS Human protein_coding chr2:238990406 chr2:238990408 synonymous SNV . 0 23 hm5C_associated_SNPs_67273 0 0 1 0 2 SCLY chr2:238990477 5'GT 238990477 Upstream 70bp
chr2 99181149 99181149 1 + T C UCEC 99181148 + 99181128 99181168 41 TCATTAAGCTGAGGAACTGCCTGCATGACGACGGCTTCCTG TCATTAAGCTGAGGAACTGCCCGCATGACGACGGCTTCCTG < 41bp 0.787061428244404 0.542593967543593 0.723385 0.17573625 prediction 0.488934921401621 Functional Loss - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99181148 chr2:99181149 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_67275 0 0 1 0 2 INPP4A chr2:99181103 3'AG 99181103 Downstream 47bp
chr2 99181149 99181149 1 + T C UCEC 99181148 + 99181128 99181168 41 TCATTAAGCTGAGGAACTGCCTGCATGACGACGGCTTCCTG TCATTAAGCTGAGGAACTGCCCGCATGACGACGGCTTCCTG < 41bp 0.787061428244404 0.542593967543593 0.723385 0.17573625 prediction 0.488934921401621 Functional Loss - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99181148 chr2:99181149 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_67275 0 0 1 0 2 INPP4A chr2:99181226 5'GT 99181226 Upstream 78bp
chr17 40933287 40933287 1 + G A SKCM 40933284 + 40933264 40933304 41 GCTCCTTCAAGACGGTGTATCGAGGGCTAGACACCGACACC GCTCCTTCAAGACGGTGTATCGAAGGCTAGACACCGACACC < 41bp 0.746719122497973 0.502254611263379 0.93882495 0.91205966 prediction 0.488929022469187 Functional Loss - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40933284 chr17:40933287 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_67277 0 0 1 0 1 WNK4 chr17:40933334 5'GT 40933334 Upstream 48bp
chr1 45270366 45270366 1 + C T SKCM 45270364 + 45270344 45270384 41 AGCACAAAGCACTTCTCCTTCTCCGTGGGTGCTGTGCCCCG AGCACAAAGCACTTCTCCTTCTTCGTGGGTGCTGTGCCCCG < 41bp 0.821913863442084 0.577450811470826 0.44959024 0.26472047 prediction 0.488926103942517 Functional Loss - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45270364 chr1:45270366 nonsynonymous SNV 0.964 1 23 hm5C_associated_SNPs_67278 0 0 0 0 2 PLK3 chr1:45270322 3'AG 45270322 Downstream 45bp
chr1 45270366 45270366 1 + C T SKCM 45270364 + 45270344 45270384 41 AGCACAAAGCACTTCTCCTTCTCCGTGGGTGCTGTGCCCCG AGCACAAAGCACTTCTCCTTCTTCGTGGGTGCTGTGCCCCG < 41bp 0.821913863442084 0.577450811470826 0.44959024 0.26472047 prediction 0.488926103942517 Functional Loss - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45270364 chr1:45270366 nonsynonymous SNV 0.964 1 23 hm5C_associated_SNPs_67278 0 0 0 0 2 PLK3 chr1:45270451 5'GT 45270451 Upstream 86bp
chr19 50216089 50216089 1 + G T UCEC 50216087 + 50216067 50216107 41 TTACCCGGACTATGTTTCCTCAGGCGGTGGATTCGGGCCTG TTACCCGGACTATGTTTCCTCATGCGGTGGATTCGGGCCTG < 41bp 0.744460907268433 0.394716791290498 0.8982193 0.39657402 prediction 0.488921814536866 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50216087 chr19:50216089 nonsynonymous SNV 0.518 4 23 hm5C_associated_SNPs_67280 0 0 0 0 2 CPT1C chr19:50215993 3'AG 50215993 Downstream 97bp
chr19 50216089 50216089 1 + G T UCEC 50216087 + 50216067 50216107 41 TTACCCGGACTATGTTTCCTCAGGCGGTGGATTCGGGCCTG TTACCCGGACTATGTTTCCTCATGCGGTGGATTCGGGCCTG < 41bp 0.744460907268433 0.394716791290498 0.8982193 0.39657402 prediction 0.488921814536866 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50216087 chr19:50216089 nonsynonymous SNV 0.518 4 23 hm5C_associated_SNPs_67280 0 0 0 0 2 CPT1C chr19:50216106 5'GT 50216106 Upstream 18bp
chr11 248825 248825 1 + C T UCEC 248823 + 248803 248843 41 CGCTGGGGCTAGCAGGACTTCTCGGCGAGGGAGTTTTTAAC CGCTGGGGCTAGCAGGACTTCTTGGCGAGGGAGTTTTTAAC < 41bp 0.827047513306265 0.58259195973077 0.51403105 0.40703917 prediction 0.488911107150989 Functional Loss - PSMD13 ENSG00000185627 CDS Human protein_coding chr11:248823 chr11:248825 synonymous SNV . 0 23 hm5C_associated_SNPs_67281 0 0 1 0 1 PSMD13 chr11:248855 5'GT 248855 Upstream 31bp
chr11 36467895 36467895 1 + G T STAD 36467892 + 36467872 36467912 41 AGATCTCCCTGCTGGGCTTCCGAGACCTAGTCTTGCTGAAG AGATCTCCCTGCTGGGCTTCCGATACCTAGTCTTGCTGAAG < 41bp 0.74445237650938 0.345236442632567 0.6661944 0.10871062 prediction 0.48890475301876 Functional Loss - PRR5L ENSG00000135362 CDS Human protein_coding chr11:36467892 chr11:36467895 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_67284 0 0 0 0 2 PRR5L chr11:36467850 3'AG 36467850 Downstream 46bp
chr11 36467895 36467895 1 + G T STAD 36467892 + 36467872 36467912 41 AGATCTCCCTGCTGGGCTTCCGAGACCTAGTCTTGCTGAAG AGATCTCCCTGCTGGGCTTCCGATACCTAGTCTTGCTGAAG < 41bp 0.74445237650938 0.345236442632567 0.6661944 0.10871062 prediction 0.48890475301876 Functional Loss - PRR5L ENSG00000135362 CDS Human protein_coding chr11:36467892 chr11:36467895 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_67284 0 0 0 0 2 PRR5L chr11:36467990 5'GT 36467990 Upstream 96bp
chr4 20706381 20706381 1 + G T LUSC 20706379 + 20706359 20706399 41 GTCAACCAGTTCTCCAGAGTCTGCAAGAAAACTTCATCCTA GTCAACCAGTTCTCCAGAGTCTTCAAGAAAACTTCATCCTA < 41bp 0.841975930491816 0.597527223357544 0.67233014 0.6455047 prediction 0.488897414268544 Functional Loss - PACRGL ENSG00000163138 CDS Human protein_coding chr4:20706379 chr4:20706381 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_67287 0 0 1 1 2 PACRGL chr4:20706283 3'AG 20706283 Downstream 99bp
chr4 20706381 20706381 1 + G T LUSC 20706379 + 20706359 20706399 41 GTCAACCAGTTCTCCAGAGTCTGCAAGAAAACTTCATCCTA GTCAACCAGTTCTCCAGAGTCTTCAAGAAAACTTCATCCTA < 41bp 0.841975930491816 0.597527223357544 0.67233014 0.6455047 prediction 0.488897414268544 Functional Loss - PACRGL ENSG00000163138 CDS Human protein_coding chr4:20706379 chr4:20706381 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_67287 0 0 1 1 2 PACRGL chr4:20706437 5'GT 20706437 Upstream 57bp
chr21 45096639 45096639 1 + C T UCEC 45096637 + 45096617 45096657 41 CACCCTGGTACAGACCATAGCTCGGGGTGTCTTCGAAGCTA CACCCTGGTACAGACCATAGCTTGGGGTGTCTTCGAAGCTA < 41bp 0.822912434758391 0.578467876598402 0.4167097 0.44963464 prediction 0.488889116319979 Functional Loss - RRP1B ENSG00000160208 CDS Human protein_coding chr21:45096637 chr21:45096639 nonsynonymous SNV 0.282 1 23 hm5C_associated_SNPs_67288 0 0 1 0 1 RRP1B chr21:45096614 3'AG 45096614 Downstream 26bp
chr5 156898710 156898710 1 + G T LUAD 156898708 + 156898688 156898728 41 TGAGGGAGAGTCTGAACCTGCTGGGGAAGCTGGGCTGTGTG TGAGGGAGAGTCTGAACCTGCTTGGGAAGCTGGGCTGTGTG < 41bp 0.893138132738276 0.648701743218742 0.87900025 0.59885013 prediction 0.488872779039068 Functional Loss - NIPAL4 ENSG00000172548 CDS Human protein_coding chr5:156898708 chr5:156898710 synonymous SNV . 0 23 hm5C_associated_SNPs_67290 0 0 0 0 1 NIPAL4 chr5:156898665 3'AG 156898665 Downstream 46bp
chr17 37358657 37358657 1 + C T KIRP 37358655 + 37358635 37358675 41 CGGGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGG CGGGCTCGATGCCGGAAAAACATCTTGGCCCGCCGGAAGGG < 41bp 0.744429823246479 0.47403982957121 0.13653025 0.12589446 prediction 0.488859646492959 Functional Loss - RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358655 chr17:37358657 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_67292 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 88bp
chr17 37358657 37358657 1 + C T KIRP 37358655 + 37358635 37358675 41 CGGGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGG CGGGCTCGATGCCGGAAAAACATCTTGGCCCGCCGGAAGGG < 41bp 0.744429823246479 0.47403982957121 0.13653025 0.12589446 prediction 0.488859646492959 Functional Loss - RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358655 chr17:37358657 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_67292 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 36bp
chr17 45747095 45747095 1 + G T SARC 45747092 + 45747072 45747112 41 AAGACCCCAGTGTAGTTGTTCGAGATACAGCTGCATGGACT AAGACCCCAGTGTAGTTGTTCGATATACAGCTGCATGGACT < 41bp 0.744421896437302 0.355506966147753 0.7441292 0.30667716 prediction 0.488843792874604 Functional Loss - KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45747092 chr17:45747095 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_67297 0 0 1 0 1 KPNB1 chr17:45747044 3'AG 45747044 Downstream 52bp
chr16 1291534 1291534 1 + A C rs547415829 1291533 + 1291513 1291553 41 CAGCAGGATCATCGTGCACCCACAGTTCTACACCGCCCAGA CAGCAGGATCATCGTGCACCCCCAGTTCTACACCGCCCAGA < 41bp 0.744420469502831 0.484189566115007 0.35194293 0.34606355 prediction 0.488840939005662 Functional Loss - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291533 chr16:1291534 synonymous SNV . 0 22 hm5C_associated_SNPs_67298 0 0 0 0 2 TPSAB1 chr16:1291435 3'AG 1291435 Downstream 100bp
chr16 1291534 1291534 1 + A C rs547415829 1291533 + 1291513 1291553 41 CAGCAGGATCATCGTGCACCCACAGTTCTACACCGCCCAGA CAGCAGGATCATCGTGCACCCCCAGTTCTACACCGCCCAGA < 41bp 0.744420469502831 0.484189566115007 0.35194293 0.34606355 prediction 0.488840939005662 Functional Loss - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291533 chr16:1291534 synonymous SNV . 0 22 hm5C_associated_SNPs_67298 0 0 0 0 2 TPSAB1 chr16:1291462 3'AG 1291462 Downstream 73bp
chr20 35812692 35812692 1 + G T LUAD 35812690 + 35812670 35812710 41 TGGAGAGACTAAAAGCCTCGCTGGATCGCCCTTTCACAAAT TGGAGAGACTAAAAGCCTCGCTTGATCGCCCTTTCACAAAT < 41bp 0.887377315478345 0.642957825981731 0.037782013 0.005361438 prediction 0.488838978993228 Functional Loss - RPN2 ENSG00000118705 CDS Human protein_coding chr20:35812690 chr20:35812692 synonymous SNV . 0 23 hm5C_associated_SNPs_67300 0 0 1 0 1 RPN2 chr20:35812776 5'GT 35812776 Upstream 85bp
chr16 31289349 31289349 1 + A T COAD 31289345 + 31289325 31289365 41 AAGCCTGGTTCTGGGGGCACCTCGATATCAGCACATCGGCC AAGCCTGGTTCTGGGGGCACCTCGTTATCAGCACATCGGCC < 41bp 0.744412466022059 0.407136323834883 0.90819836 0.11268142 prediction 0.488824932044117 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31289345 chr16:31289349 synonymous SNV . 0 25 hm5C_associated_SNPs_67304 0 0 0 0 2 ITGAM chr16:31289288 3'AG 31289288 Downstream 62bp
chr16 31289349 31289349 1 + A T COAD 31289345 + 31289325 31289365 41 AAGCCTGGTTCTGGGGGCACCTCGATATCAGCACATCGGCC AAGCCTGGTTCTGGGGGCACCTCGTTATCAGCACATCGGCC < 41bp 0.744412466022059 0.407136323834883 0.90819836 0.11268142 prediction 0.488824932044117 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31289345 chr16:31289349 synonymous SNV . 0 25 hm5C_associated_SNPs_67304 0 0 0 0 2 ITGAM chr16:31289430 5'GT 31289430 Upstream 82bp
chr16 31289348 31289348 1 + G A UCEC 31289345 + 31289325 31289365 41 AAGCCTGGTTCTGGGGGCACCTCGATATCAGCACATCGGCC AAGCCTGGTTCTGGGGGCACCTCAATATCAGCACATCGGCC < 41bp 0.744412466022059 0.498059528978712 0.90819836 0.9051951 prediction 0.488824932044117 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31289345 chr16:31289348 nonsynonymous SNV 0.988 3 24 hm5C_associated_SNPs_67305 0 0 0 0 2 ITGAM chr16:31289288 3'AG 31289288 Downstream 61bp
chr16 31289348 31289348 1 + G A UCEC 31289345 + 31289325 31289365 41 AAGCCTGGTTCTGGGGGCACCTCGATATCAGCACATCGGCC AAGCCTGGTTCTGGGGGCACCTCAATATCAGCACATCGGCC < 41bp 0.744412466022059 0.498059528978712 0.90819836 0.9051951 prediction 0.488824932044117 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31289345 chr16:31289348 nonsynonymous SNV 0.988 3 24 hm5C_associated_SNPs_67305 0 0 0 0 2 ITGAM chr16:31289430 5'GT 31289430 Upstream 83bp
chr19 15726538 15726538 1 + G T UCEC 15726535 + 15726515 15726555 41 CTCCTGGCCCGCATCCTGGCCTGGACCTATGCCTTCTATCA CTCCTGGCCCGCATCCTGGCCTGTACCTATGCCTTCTATCA < 41bp 0.744410221675509 0.372138402280509 0.19616851 0.07719922 prediction 0.488820443351017 Functional Loss - CYP4F8 ENSG00000186526 ncRNA_exonic Human protein_coding chr19:15726535 chr19:15726538 . 0.030 2 24 hm5C_associated_SNPs_67306 0 0 0 0 1 CYP4F8 chr19:15726625 5'GT 15726625 Upstream 88bp
chr11 118828378 118828378 1 + C T GBM 118828376 + 118828356 118828396 41 GATCCCAATGTCCACACTCCCTCGTAAGTAACACTCCCGCC GATCCCAATGTCCACACTCCCTTGTAAGTAACACTCCCGCC < 41bp 0.744405443616508 0.481741790855569 0.041205794 0.01699245 prediction 0.488810887233015 Functional Loss - UPK2 ENSG00000110375 CDS Human protein_coding chr11:118828376 chr11:118828378 stopgain 0.998 1 23 hm5C_associated_SNPs_67309 0 0 0 0 2 UPK2 chr11:118828308 3'AG 118828308 Downstream 71bp
chr11 118828378 118828378 1 + C T GBM 118828376 + 118828356 118828396 41 GATCCCAATGTCCACACTCCCTCGTAAGTAACACTCCCGCC GATCCCAATGTCCACACTCCCTTGTAAGTAACACTCCCGCC < 41bp 0.744405443616508 0.481741790855569 0.041205794 0.01699245 prediction 0.488810887233015 Functional Loss - UPK2 ENSG00000110375 CDS Human protein_coding chr11:118828376 chr11:118828378 stopgain 0.998 1 23 hm5C_associated_SNPs_67309 0 0 0 0 2 UPK2 chr11:118828378 5'GT 118828378 Upstream 1bp
chr2 23865229 23865229 1 + C T UCEC 23865227 + 23865207 23865247 41 GGCACAGGGCCATGGGTGACCACGGTGGCCGCCGGGAACCA GGCACAGGGCCATGGGTGACCATGGTGGCCGCCGGGAACCA < 41bp 0.797354944420238 0.552954178872651 0.655802 0.530761 prediction 0.488801531095173 Functional Loss - KLHL29 ENSG00000119771 CDS Human protein_coding chr2:23865227 chr2:23865229 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_67311 0 0 0 0 1 KLHL29 chr2:23865208 3'AG 23865208 Downstream 22bp
chrX 67938390 67938390 1 + G A LUAD 67938387 + 67938367 67938407 41 CATGAATGAGGCTGAGGCTGCGGGGCCCCTGGCTGGACTCC CATGAATGAGGCTGAGGCTGCGGAGCCCCTGGCTGGACTCC < 41bp 0.762002592666169 0.517611132682558 0.94312876 0.93281513 prediction 0.488782919967223 Functional Loss - STARD8 ENSG00000130052 CDS Human protein_coding chrX:67938387 chrX:67938390 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_67316 0 0 1 0 1 STARD8 chrX:67938471 5'GT 67938471 Upstream 82bp
chr3 42633077 42633077 1 + G T LUAD 42633074 + 42633054 42633094 41 TGGAGTATCAGAACAAGGGCCGCGGGAACGAGTGCGTGCAG TGGAGTATCAGAACAAGGGCCGCTGGAACGAGTGCGTGCAG < 41bp 0.916228824563323 0.671838750366253 0.6524462 0.3539339 prediction 0.488780148394141 Functional Loss - SS18L2 ENSG00000008324 CDS Human protein_coding chr3:42633074 chr3:42633077 nonsynonymous SNV 0.860 2 24 hm5C_associated_SNPs_67317 0 0 1 0 2 SS18L2 chr3:42633017 3'AG 42633017 Downstream 61bp
chr3 42633077 42633077 1 + G T LUAD 42633074 + 42633054 42633094 41 TGGAGTATCAGAACAAGGGCCGCGGGAACGAGTGCGTGCAG TGGAGTATCAGAACAAGGGCCGCTGGAACGAGTGCGTGCAG < 41bp 0.916228824563323 0.671838750366253 0.6524462 0.3539339 prediction 0.488780148394141 Functional Loss - SS18L2 ENSG00000008324 CDS Human protein_coding chr3:42633074 chr3:42633077 nonsynonymous SNV 0.860 2 24 hm5C_associated_SNPs_67317 0 0 1 0 2 SS18L2 chr3:42633093 5'GT 42633093 Upstream 17bp
chr7 138849891 138849891 1 + G C COAD 138849887 + 138849867 138849907 41 TGTATCTCTAGGTTGTTTTCCGAGGAGGTGAAGGGGCTTTG TGTATCTCTAGGTTGTTTTCCGAGCAGGTGAAGGGGCTTTG < 41bp 0.744388991694742 0.462046541675845 0.9273633 0.9008541 prediction 0.488777983389485 Functional Loss - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138849887 chr7:138849891 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_67318 0 0 0 0 1 TTC26 chr7:138849878 3'AG 138849878 Downstream 14bp
chr15 101447436 101447436 1 + C T rs146643806 101447434 + 101447414 101447454 41 CAGCCGTGTTCACAAAAAATCTCGACAAAGCCCTGAAGTTG CAGCCGTGTTCACAAAAAATCTTGACAAAGCCCTGAAGTTG < 41bp 0.830841145136321 0.586466960478173 0.23097387 0.11684024 prediction 0.488748369316297 Functional Loss - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101447434 chr15:101447436 synonymous SNV . 0 23 hm5C_associated_SNPs_67323 0 0 0 0 1 ALDH1A3 chr15:101447483 5'GT 101447483 Upstream 48bp
chr21 45708297 45708297 1 + G A SKCM 45708294 + 45708274 45708314 41 CTCCGGGGACGTCCCGGGAGCCCGAGGGGCCGTGGAGGGGA CTCCGGGGACGTCCCGGGAGCCCAAGGGGCCGTGGAGGGGA < 41bp 0.744373676810471 0.495727168359365 0.50352085 0.39448848 prediction 0.488747353620943 Functional Loss - AIRE ENSG00000160224 CDS Human protein_coding chr21:45708294 chr21:45708297 nonsynonymous SNV 0.582 1 24 hm5C_associated_SNPs_67324 0 0 0 0 2 AIRE chr21:45708228 3'AG 45708228 Downstream 70bp
chr21 45708297 45708297 1 + G A SKCM 45708294 + 45708274 45708314 41 CTCCGGGGACGTCCCGGGAGCCCGAGGGGCCGTGGAGGGGA CTCCGGGGACGTCCCGGGAGCCCAAGGGGCCGTGGAGGGGA < 41bp 0.744373676810471 0.495727168359365 0.50352085 0.39448848 prediction 0.488747353620943 Functional Loss - AIRE ENSG00000160224 CDS Human protein_coding chr21:45708294 chr21:45708297 nonsynonymous SNV 0.582 1 24 hm5C_associated_SNPs_67324 0 0 0 0 2 AIRE chr21:45708341 5'GT 45708341 Upstream 45bp
chrX 48678558 48678558 1 + C T COAD 48678556 + 48678536 48678576 41 CTCAGCTGGCTTTGATGCTGCACGGGGGGATCCGCTGGGGG CTCAGCTGGCTTTGATGCTGCATGGGGGGATCCGCTGGGGG < 41bp 0.767568246859308 0.523205615260647 0.6374059 0.890311 prediction 0.488725263197322 Functional Loss - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48678556 chrX:48678558 nonsynonymous SNV 0.985 1 23 hm5C_associated_SNPs_67330 0 0 1 0 1 HDAC6 chrX:48678513 3'AG 48678513 Downstream 46bp
chr16 30776301 30776301 1 + G A rs186930335 30776298 + 30776278 30776318 41 TGAGGCGGCTCAGGCACACACCCGAGAGCTGGGCCGTGAGA TGAGGCGGCTCAGGCACACACCCAAGAGCTGGGCCGTGAGA < 41bp 0.745051973606056 0.50068976787284 0.18731517 0.12905172 prediction 0.488724411466432 Functional Loss - RNF40 ENSG00000103549 CDS Human protein_coding chr16:30776298 chr16:30776301 nonsynonymous SNV 0.986 0 24 hm5C_associated_SNPs_67331 0 0 1 0 2 RNF40 chr16:30776259 3'AG 30776259 Downstream 43bp
chr16 30776301 30776301 1 + G A rs186930335 30776298 + 30776278 30776318 41 TGAGGCGGCTCAGGCACACACCCGAGAGCTGGGCCGTGAGA TGAGGCGGCTCAGGCACACACCCAAGAGCTGGGCCGTGAGA < 41bp 0.745051973606056 0.50068976787284 0.18731517 0.12905172 prediction 0.488724411466432 Functional Loss - RNF40 ENSG00000103549 CDS Human protein_coding chr16:30776298 chr16:30776301 nonsynonymous SNV 0.986 0 24 hm5C_associated_SNPs_67331 0 0 1 0 2 RNF40 chr16:30776380 5'GT 30776380 Upstream 80bp
chr2 63280181 63280181 1 + G T LUSC 63280178 + 63280158 63280198 41 CATGAACGGGCTGGGCCTGGCCGGGCCCGCCATGGACCTCC CATGAACGGGCTGGGCCTGGCCGTGCCCGCCATGGACCTCC < 41bp 0.744360051642801 0.384435059877301 0.364668 0.027184159 prediction 0.488720103285602 Functional Loss - OTX1 ENSG00000115507 CDS Human protein_coding chr2:63280178 chr2:63280181 nonsynonymous SNV 0.350 3 24 hm5C_associated_SNPs_67333 0 0 0 0 1 OTX1 chr2:63280222 5'GT 63280222 Upstream 42bp
chr1 67816588 67816588 1 + C T rs569526490 67816586 + 67816566 67816606 41 CAGAGGCAAGAGGAAAAATTCTCCACTATCAGGTGACCTTG CAGAGGCAAGAGGAAAAATTCTTCACTATCAGGTGACCTTG < 41bp 0.744348154390832 0.448059405146339 0.90975213 0.05436361 prediction 0.488696308781663 Functional Loss - IL12RB2 ENSG00000081985 CDS Human protein_coding chr1:67816586 chr1:67816588 synonymous SNV . 0 23 hm5C_associated_SNPs_67335 0 0 0 0 1 IL12RB2 chr1:67816553 3'AG 67816553 Downstream 36bp
chr13 114164726 114164726 1 + G T LUAD 114164724 + 114164704 114164744 41 GGTTCCTCATGGGCAGTGCTCGGGGTGACAAAGAAGGTAGG GGTTCCTCATGGGCAGTGCTCGTGGTGACAAAGAAGGTAGG < 41bp 0.896969433506558 0.652625806720298 0.95645887 0.88910186 prediction 0.488687253572521 Functional Loss - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114164724 chr13:114164726 synonymous SNV . 0 23 hm5C_associated_SNPs_67337 0 0 1 0 1 TMCO3 chr13:114164739 5'GT 114164739 Upstream 14bp
chr11 67052795 67052795 1 + C T UCEC 67052793 + 67052773 67052813 41 TGCAGTGGAAGAAGGAGCTGCGCGACGCCTACCGCGAGGCC TGCAGTGGAAGAAGGAGCTGCGTGACGCCTACCGCGAGGCC < 41bp 0.754392830604242 0.510055322518633 0.741712 0.7276524 prediction 0.488675016171217 Functional Loss - GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052793 chr11:67052795 synonymous SNV . 0 23 hm5C_associated_SNPs_67338 0 0 1 0 1 GRK2 chr11:67052757 3'AG 67052757 Downstream 39bp
chr15 52074974 52074974 1 + C T UCEC 52074972 + 52074952 52074992 41 AGGCTCTGGAGACCAACACTCACGTGAAGAAGTTCAGCCTG AGGCTCTGGAGACCAACACTCATGTGAAGAAGTTCAGCCTG < 41bp 0.7443372763401 0.468915178867013 0.29431766 0.32842636 prediction 0.488674552680201 Functional Loss - TMOD2 ENSG00000128872 CDS Human protein_coding chr15:52074972 chr15:52074974 synonymous SNV . 0 23 hm5C_associated_SNPs_67339 0 0 1 0 2 TMOD2 chr15:52074918 3'AG 52074918 Downstream 57bp
chr15 52074974 52074974 1 + C T UCEC 52074972 + 52074952 52074992 41 AGGCTCTGGAGACCAACACTCACGTGAAGAAGTTCAGCCTG AGGCTCTGGAGACCAACACTCATGTGAAGAAGTTCAGCCTG < 41bp 0.7443372763401 0.468915178867013 0.29431766 0.32842636 prediction 0.488674552680201 Functional Loss - TMOD2 ENSG00000128872 CDS Human protein_coding chr15:52074972 chr15:52074974 synonymous SNV . 0 23 hm5C_associated_SNPs_67339 0 0 1 0 2 TMOD2 chr15:52075025 5'GT 52075025 Upstream 52bp
chr7 128585935 128585935 1 + G C SKCM 128585934 + 128585914 128585954 41 ACAGGGAAATACACCGAAGGCGTGGATGAAGCCGATCCGGC ACAGGGAAATACACCGAAGGCCTGGATGAAGCCGATCCGGC < 41bp 0.744324239406424 0.441402534623766 0.7642213 0.5743854 prediction 0.488648478812847 Functional Loss - IRF5 ENSG00000128604 CDS Human protein_coding chr7:128585934 chr7:128585935 nonsynonymous SNV 0.933 3 22 hm5C_associated_SNPs_67345 0 0 0 0 1 IRF5 chr7:128585899 3'AG 128585899 Downstream 37bp
chrX 153657478 153657478 1 + G T LUSC 153657476 + 153657456 153657496 41 CTACCTACTTAGATCCCGCCCTGGAGCTGGGTCCCAGGAAT CTACCTACTTAGATCCCGCCCTTGAGCTGGGTCCCAGGAAT < 41bp 0.88533486506452 0.641024243271057 0.24912688 0.12131137 prediction 0.488621243586927 Functional Loss - ATP6AP1 ENSG00000071553 CDS Human protein_coding chrX:153657476 chrX:153657478 synonymous SNV . 0 23 hm5C_associated_SNPs_67349 0 0 1 0 2 ATP6AP1 chrX:153657394 3'AG 153657394 Downstream 85bp
chrX 153657478 153657478 1 + G T LUSC 153657476 + 153657456 153657496 41 CTACCTACTTAGATCCCGCCCTGGAGCTGGGTCCCAGGAAT CTACCTACTTAGATCCCGCCCTTGAGCTGGGTCCCAGGAAT < 41bp 0.88533486506452 0.641024243271057 0.24912688 0.12131137 prediction 0.488621243586927 Functional Loss - ATP6AP1 ENSG00000071553 CDS Human protein_coding chrX:153657476 chrX:153657478 synonymous SNV . 0 23 hm5C_associated_SNPs_67349 0 0 1 0 2 ATP6AP1 chrX:153657520 5'GT 153657520 Upstream 43bp
chr15 89172497 89172497 1 + C T LUAD 89172495 + 89172475 89172515 41 GGCAAGGTGGTGGTGGGGCACGCGCTGCACAACGACTTCCA GGCAAGGTGGTGGTGGGGCACGTGCTGCACAACGACTTCCA < 41bp 0.74430972640452 0.472713124578861 0.072532356 0.15483415 prediction 0.48861945280904 Functional Loss - AEN ENSG00000181026 CDS Human protein_coding chr15:89172495 chr15:89172497 nonsynonymous SNV 0.417 4 23 hm5C_associated_SNPs_67351 0 0 1 0 1 AEN chr15:89172457 3'AG 89172457 Downstream 41bp
chr15 89172498 89172498 1 + G T LUSC 89172495 + 89172475 89172515 41 GGCAAGGTGGTGGTGGGGCACGCGCTGCACAACGACTTCCA GGCAAGGTGGTGGTGGGGCACGCTCTGCACAACGACTTCCA < 41bp 0.74430972640452 0.343596519945416 0.072532356 0.029410511 prediction 0.48861945280904 Functional Loss - AEN ENSG00000181026 CDS Human protein_coding chr15:89172495 chr15:89172498 synonymous SNV . 0 24 hm5C_associated_SNPs_67352 0 0 1 0 1 AEN chr15:89172457 3'AG 89172457 Downstream 42bp
chr6 31473478 31473478 1 + A C rs202130166 31473474 + 31473454 31473494 41 GGTTTCTCGCTGAGGGACATCTGGATGGTCAGCCCTTCCTG GGTTTCTCGCTGAGGGACATCTGGCTGGTCAGCCCTTCCTG < 41bp 0.744304083517994 0.474574014972638 0.91116583 0.87108266 prediction 0.488608167035988 Functional Loss - MICB ENSG00000204516 CDS Human protein_coding chr6:31473474 chr6:31473478 nonsynonymous SNV 0.081 3 25 hm5C_associated_SNPs_67353 0 0 1 0 1 MICB chr6:31473394 3'AG 31473394 Downstream 85bp
chr8 99044505 99044505 1 + T C GBM 99044504 + 99044484 99044524 41 CTCCGATGGAAGACAGGACTCTCCAGCAGGGGAACTGCCAA CTCCGATGGAAGACAGGACTCCCCAGCAGGGGAACTGCCAA < 41bp 0.814639093004238 0.570340592601516 0.9532931 0.026182175 prediction 0.488597000805444 Functional Loss - MATN2 ENSG00000132561 CDS Human protein_coding chr8:99044504 chr8:99044505 synonymous SNV . 0 22 hm5C_associated_SNPs_67356 0 0 0 0 2 MATN2 chr8:99044474 3'AG 99044474 Downstream 32bp
chr8 99044505 99044505 1 + T C GBM 99044504 + 99044484 99044524 41 CTCCGATGGAAGACAGGACTCTCCAGCAGGGGAACTGCCAA CTCCGATGGAAGACAGGACTCCCCAGCAGGGGAACTGCCAA < 41bp 0.814639093004238 0.570340592601516 0.9532931 0.026182175 prediction 0.488597000805444 Functional Loss - MATN2 ENSG00000132561 CDS Human protein_coding chr8:99044504 chr8:99044505 synonymous SNV . 0 22 hm5C_associated_SNPs_67356 0 0 0 0 2 MATN2 chr8:99044545 5'GT 99044545 Upstream 41bp
chr1 180241032 180241032 1 + C T UCEC 180241030 + 180241010 180241050 41 AGAAGGATGCAGGGCGGCACCGCTGGGGGCAGTTCTATAAG AGAAGGATGCAGGGCGGCACCGTTGGGGGCAGTTCTATAAG < 41bp 0.744293821854748 0.468117638251849 0.3370086 0.21997464 prediction 0.488587643709496 Functional Loss - LHX4 ENSG00000121454 CDS Human protein_coding chr1:180241030 chr1:180241032 synonymous SNV . 0 23 hm5C_associated_SNPs_67357 0 0 0 0 1 LHX4 chr1:180240970 3'AG 180240970 Downstream 63bp
chr1 32089222 32089222 1 + G A SKCM 32089219 + 32089199 32089239 41 CTGAGTGGAGAGCCCCAGCCCCGGGCCCGCGCCTTCCTGGC CTGAGTGGAGAGCCCCAGCCCCGAGCCCGCGCCTTCCTGGC < 41bp 0.763671726111541 0.5193924147503 0.87530375 0.6940607 prediction 0.488558622722483 Functional Loss - HCRTR1 ENSG00000121764 CDS Human protein_coding chr1:32089219 chr1:32089222 synonymous SNV . 0 24 hm5C_associated_SNPs_67362 0 0 0 0 1 HCRTR1 chr1:32089124 3'AG 32089124 Downstream 99bp
chr11 65647740 65647740 1 + G C SKCM 65647736 + 65647716 65647756 41 TGTTCCAGATCCAGTTCAACCGGAGTTACCTGAGCCCAGAA TGTTCCAGATCCAGTTCAACCGGACTTACCTGAGCCCAGAA < 41bp 0.849267332436815 0.604997248988273 0.90640235 0.7406251 prediction 0.488540166897082 Functional Loss - CTSW ENSG00000172543 CDS Human protein_coding chr11:65647736 chr11:65647740 nonsynonymous SNV 0.979 4 25 hm5C_associated_SNPs_67367 0 0 0 0 2 CTSW chr11:65647673 3'AG 65647673 Downstream 68bp
chr11 65647740 65647740 1 + G C SKCM 65647736 + 65647716 65647756 41 TGTTCCAGATCCAGTTCAACCGGAGTTACCTGAGCCCAGAA TGTTCCAGATCCAGTTCAACCGGACTTACCTGAGCCCAGAA < 41bp 0.849267332436815 0.604997248988273 0.90640235 0.7406251 prediction 0.488540166897082 Functional Loss - CTSW ENSG00000172543 CDS Human protein_coding chr11:65647736 chr11:65647740 nonsynonymous SNV 0.979 4 25 hm5C_associated_SNPs_67367 0 0 0 0 2 CTSW chr11:65647757 5'GT 65647757 Upstream 18bp
chr12 38712166 38712166 1 + C T HNSC 38712164 + 38712144 38712184 41 TGGTCTGAACATGTTGTCTGCTCCATTGGGATGCTCAGATT TGGTCTGAACATGTTGTCTGCTTCATTGGGATGCTCAGATT < 41bp 0.744268118124397 0.449242679163164 0.90310425 0.16360119 prediction 0.488536236248794 Functional Loss - ALG10B ENSG00000175548 CDS Human protein_coding chr12:38712164 chr12:38712166 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_67368 0 0 0 0 1 ALG10B chr12:38712260 5'GT 38712260 Upstream 95bp
chr19 36245159 36245159 1 + G A LUAD 36245156 + 36245136 36245176 41 TGTCCATGCAGCCCTCTGAGCCCGAGCCCTCACCCTCCACA TGTCCATGCAGCCCTCTGAGCCCAAGCCCTCACCCTCCACA < 41bp 0.756647668073101 0.512382246125785 0.5049492 0.20564601 prediction 0.488530843894633 Functional Loss - LIN37 ENSG00000267796 CDS Human protein_coding chr19:36245156 chr19:36245159 nonsynonymous SNV 0.285 0 24 hm5C_associated_SNPs_67369 0 0 1 0 2 LIN37 chr19:36245147 3'AG 36245147 Downstream 13bp
chr19 36245159 36245159 1 + G A LUAD 36245156 + 36245136 36245176 41 TGTCCATGCAGCCCTCTGAGCCCGAGCCCTCACCCTCCACA TGTCCATGCAGCCCTCTGAGCCCAAGCCCTCACCCTCCACA < 41bp 0.756647668073101 0.512382246125785 0.5049492 0.20564601 prediction 0.488530843894633 Functional Loss - LIN37 ENSG00000267796 CDS Human protein_coding chr19:36245156 chr19:36245159 nonsynonymous SNV 0.285 0 24 hm5C_associated_SNPs_67369 0 0 1 0 2 LIN37 chr19:36245220 5'GT 36245220 Upstream 62bp
chr11 65338876 65338876 1 + G A UCEC 65338873 + 65338853 65338893 41 TCTTTTTAGCTCTGAATGCCCAGGCTGCCCTCTCCCAAGCT TCTTTTTAGCTCTGAATGCCCAGACTGCCCTCTCCCAAGCT < 41bp 0.753000923391945 0.50874005416475 0.6418757 0.37539297 prediction 0.488521738454391 Functional Loss - SSSCA1 ENSG00000173465 CDS Human protein_coding chr11:65338873 chr11:65338876 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_67371 0 0 1 0 1 SSSCA1 chr11:65338862 3'AG 65338862 Downstream 15bp
chr16 85690909 85690909 1 + G A STAD 85690906 + 85690886 85690926 41 AGCTGAAGGATGCCGGCCTGCAGGCGCCCAAGCCCGTCCAA AGCTGAAGGATGCCGGCCTGCAGACGCCCAAGCCCGTCCAA < 41bp 0.75873794633124 0.514479006901037 0.8611965 0.78083944 prediction 0.488517878860405 Functional Loss - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85690906 chr16:85690909 nonsynonymous SNV 0.913 0 24 hm5C_associated_SNPs_67372 0 0 1 0 1 GSE1 chr16:85690883 3'AG 85690883 Downstream 27bp
chr5 5186229 5186229 1 + G T UCEC 5186227 + 5186207 5186247 41 ATGAGTATAAGTCTTGCTTACGGCATAAGCGCTCTCTTCTG ATGAGTATAAGTCTTGCTTACGTCATAAGCGCTCTCTTCTG < 41bp 0.744258875697466 0.400790035857369 0.86264396 0.33288974 prediction 0.488517751394931 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5186227 chr5:5186229 synonymous SNV . 0 23 hm5C_associated_SNPs_67373 0 0 0 0 1 ADAMTS16 chr5:5186165 3'AG 5186165 Downstream 65bp
chr8 99961782 99961782 1 + C T COAD 99961780 + 99961760 99961800 41 CACACGGACGAGAGGCCGTACACGTGTGACATCTGCCACAA CACACGGACGAGAGGCCGTACATGTGTGACATCTGCCACAA < 41bp 0.798001288826954 0.553746852812316 0.15379226 0.10426593 prediction 0.488508872029277 Functional Loss - OSR2 ENSG00000164920 CDS Human protein_coding chr8:99961780 chr8:99961782 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_67374 0 0 1 0 1 OSR2 chr8:99961836 5'GT 99961836 Upstream 55bp
chr18 61261597 61261597 1 + A C rs577063790 61261596 + 61261576 61261616 41 TCTTCATTTGCAGAAAAAATCAAGGACTTGTTCCCAGATGG TCTTCATTTGCAGAAAAAATCCAGGACTTGTTCCCAGATGG < 41bp 0.766683673058235 0.522430397677096 0.91487205 0.4856967 prediction 0.488506550762276 Functional Loss - SERPINB13 ENSG00000197641 CDS Human protein_coding chr18:61261596 chr18:61261597 nonsynonymous SNV 0.962 4 22 hm5C_associated_SNPs_67375 0 0 0 0 1 SERPINB13 chr18:61261589 3'AG 61261589 Downstream 9bp
chr10 70987106 70987106 1 + G A SKCM 70987103 + 70987083 70987123 41 AAGATGTTGCCCACCTTCGTCAGGGCCATTCCCGATGGTTC AAGATGTTGCCCACCTTCGTCAGAGCCATTCCCGATGGTTC < 41bp 0.751437233635019 0.507194415854895 0.92795753 0.90076405 prediction 0.488485635560248 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:70987103 chr10:70987106 synonymous SNV . 0 24 hm5C_associated_SNPs_67377 0 0 1 0 1 HKDC1 chr10:70987125 5'GT 70987125 Upstream 20bp
chr1 101186061 101186061 1 + G T GBM 101186059 + 101186039 101186079 41 TTTTAAAATCGAGACCACCCCAGAATCTAGATATCTTGCTC TTTTAAAATCGAGACCACCCCATAATCTAGATATCTTGCTC < 41bp 0.744242796661645 0.414976947561961 0.2400673 0.06908253 prediction 0.48848559332329 Functional Loss - VCAM1 ENSG00000162692 CDS Human protein_coding chr1:101186059 chr1:101186061 stopgain 0.055 0 23 hm5C_associated_SNPs_67378 0 0 0 0 2 VCAM1 chr1:101186032 3'AG 101186032 Downstream 30bp
chr1 101186061 101186061 1 + G T GBM 101186059 + 101186039 101186079 41 TTTTAAAATCGAGACCACCCCAGAATCTAGATATCTTGCTC TTTTAAAATCGAGACCACCCCATAATCTAGATATCTTGCTC < 41bp 0.744242796661645 0.414976947561961 0.2400673 0.06908253 prediction 0.48848559332329 Functional Loss - VCAM1 ENSG00000162692 CDS Human protein_coding chr1:101186059 chr1:101186061 stopgain 0.055 0 23 hm5C_associated_SNPs_67378 0 0 0 0 2 VCAM1 chr1:101186121 5'GT 101186121 Upstream 61bp
chr6 151907104 151907104 1 + C T PAAD 151907102 + 151907082 151907122 41 CTGGGTTTCACCAGAAAGCTCTCCAGAGGGCCCAGAAAGCA CTGGGTTTCACCAGAAAGCTCTTCAGAGGGCCCAGAAAGCA < 41bp 0.744238900265222 0.431991929004644 0.9377746 0.5381013 prediction 0.488477800530443 Functional Loss - CCDC170 ENSG00000120262 CDS Human protein_coding chr6:151907102 chr6:151907104 synonymous SNV . 0 23 hm5C_associated_SNPs_67379 0 0 0 0 1 CCDC170 chr6:151907024 3'AG 151907024 Downstream 81bp
chr7 73731896 73731896 1 + T C STAD 73731895 + 73731875 73731915 41 CCATGCAGAAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGG CCATGCAGAAGCCCAGCGGCCCGAAGCCCCCCGGCCGTGGG < 41bp 0.748015853229278 0.503785155289496 0.18210655 0.21427378 prediction 0.488461395879564 Functional Loss - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731895 chr7:73731896 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_67382 0 0 0 0 1 CLIP2 chr7:73731810 3'AG 73731810 Downstream 87bp
chr12 113346548 113346548 1 + C T KICH 113346546 + 113346526 113346566 41 GGCTCCACGCTGGGGCAACCCCCGTGCGCTCAGCTTCGTAC GGCTCCACGCTGGGGCAACCCCTGTGCGCTCAGCTTCGTAC < 41bp 0.778435650192214 0.534212490980736 0.06587368 0.04104504 prediction 0.488446318422956 Functional Loss - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113346546 chr12:113346548 nonsynonymous SNV 0.005 3 23 hm5C_associated_SNPs_67383 0 0 0 0 1 OAS1 chr12:113346629 5'GT 113346629 Upstream 82bp
chr15 41099538 41099538 1 + A C UCEC 41099534 + 41099514 41099554 41 CAGGAAGGACCGCCAGACCTCTCAAGATCAGCCTTCCTCGC CAGGAAGGACCGCCAGACCTCTCACGATCAGCCTTCCTCGC < 41bp 0.744213960639968 0.375117274889009 0.19178703 0.14553416 prediction 0.488427921279936 Functional Loss - ZFYVE19 ENSG00000166140 CDS Human other chr15:41099534 chr15:41099538 synonymous SNV . 0 25 hm5C_associated_SNPs_67385 0 0 0 0 1 DNAJC17;ZFYVE19 chr15:41099611 5'GT 41099611 Upstream 74bp
chr11 44639739 44639739 1 + T C LUAD 44639738 + 44639718 44639758 41 TGCTGCGGCTGGGTCAGCTTCTACAACTGGACAGACAACGC TGCTGCGGCTGGGTCAGCTTCCACAACTGGACAGACAACGC < 41bp 0.791210648459593 0.54700224079755 0.90323746 0.32802802 prediction 0.488416815324087 Functional Loss - CD82 ENSG00000085117 CDS Human protein_coding chr11:44639738 chr11:44639739 nonsynonymous SNV 0.958 0 22 hm5C_associated_SNPs_67387 0 0 1 0 1 CD82 chr11:44639712 3'AG 44639712 Downstream 28bp
chr19 4234821 4234821 1 + G A CESC 4234818 + 4234798 4234838 41 CAGGGAGCTGCGCGCTTCCACCGGGTGAGGAGGATGAGGGG CAGGGAGCTGCGCGCTTCCACCGAGTGAGGAGGATGAGGGG < 41bp 0.757993049251552 0.513788984399284 0.77746 0.24986136 prediction 0.488408129704537 Functional Loss - EBI3 ENSG00000105246 CDS Human protein_coding chr19:4234818 chr19:4234821 synonymous SNV . 0 24 hm5C_associated_SNPs_67389 0 0 0 0 1 EBI3 chr19:4234821 5'GT 4234821 Upstream 1bp
chr16 68592375 68592375 1 + G T SARC 68592373 + 68592353 68592393 41 CTTGTGTATTTACCCATGAGCAGGATATCAAGTTTCCAAGC CTTGTGTATTTACCCATGAGCATGATATCAAGTTTCCAAGC < 41bp 0.744204039837867 0.447449659564362 0.85436416 0.0791823 prediction 0.488408079675735 Functional Loss - ZFP90 ENSG00000184939 splicing Human protein_coding chr16:68592373 chr16:68592375 . 1.000 0 23 hm5C_associated_SNPs_67390 0 0 1 0 1 ZFP90 chr16:68592471 5'GT 68592471 Upstream 97bp
chr18 77208916 77208916 1 + C T rs200262117 77208914 + 77208894 77208934 41 AGACCGTGTCCACCACCAGCCACGAGGCCATCCTCTCCAAC AGACCGTGTCCACCACCAGCCATGAGGCCATCCTCTCCAAC < 41bp 0.8022350739662 0.558031950994444 0.12730923 0.13100281 prediction 0.488406245943512 Functional Loss - NFATC1 ENSG00000131196 CDS Human protein_coding chr18:77208914 chr18:77208916 synonymous SNV . 0 23 hm5C_associated_SNPs_67391 0 0 0 0 1 NFATC1 chr18:77208984 5'GT 77208984 Upstream 69bp
chr7 6631468 6631468 1 + G A UCEC 6631465 + 6631445 6631485 41 GCGGTGGCTGTGTGTCGAATCCCGGTGTTGGAGTGTGCTGC GCGGTGGCTGTGTGTCGAATCCCAGTGTTGGAGTGTGCTGC < 41bp 0.74419748045185 0.49621281308371 0.44880837 0.2634058 prediction 0.488394960903701 Functional Loss - C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631465 chr7:6631468 synonymous SNV . 0 24 hm5C_associated_SNPs_67394 0 0 1 0 1 C7orf26 chr7:6631498 5'GT 6631498 Upstream 31bp
chr10 116038530 116038530 1 + G A SKCM 116038527 + 116038507 116038547 41 CACAGGACGCTGGAGATGGTCCGGGAGTTCGCTGGCAATGC CACAGGACGCTGGAGATGGTCCGAGAGTTCGCTGGCAATGC < 41bp 0.750569505801739 0.506390631215139 0.8666329 0.5577769 prediction 0.488357749173199 Functional Loss - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116038527 chr10:116038530 synonymous SNV . 0 24 hm5C_associated_SNPs_67399 0 0 0 0 2 VWA2 chr10:116038478 3'AG 116038478 Downstream 53bp
chr10 116038530 116038530 1 + G A SKCM 116038527 + 116038507 116038547 41 CACAGGACGCTGGAGATGGTCCGGGAGTTCGCTGGCAATGC CACAGGACGCTGGAGATGGTCCGAGAGTTCGCTGGCAATGC < 41bp 0.750569505801739 0.506390631215139 0.8666329 0.5577769 prediction 0.488357749173199 Functional Loss - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116038527 chr10:116038530 synonymous SNV . 0 24 hm5C_associated_SNPs_67399 0 0 0 0 2 VWA2 chr10:116038610 5'GT 116038610 Upstream 81bp
chr1 9784037 9784037 1 + G T UCEC 9784034 + 9784014 9784054 41 CTTCCCCACCCAGGGAGGCCCTGGATCGAGCCATTGAGGAG CTTCCCCACCCAGGGAGGCCCTGTATCGAGCCATTGAGGAG < 41bp 0.744176061853874 0.351544203252976 0.281658 0.06342462 prediction 0.488352123707748 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9784034 chr1:9784037 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_67402 0 0 1 0 1 PIK3CD chr1:9784027 3'AG 9784027 Downstream 11bp
chr10 115457341 115457341 1 + C T ESCA 115457339 + 115457319 115457359 41 GATGCTAAGCCAGACCGGTCCTCGTTTGTACCGTCCCTCTT GATGCTAAGCCAGACCGGTCCTTGTTTGTACCGTCCCTCTT < 41bp 0.744176026025645 0.471870166105556 0.1428968 0.032766223 prediction 0.488352052051289 Functional Loss - CASP7 ENSG00000165806 CDS Human protein_coding chr10:115457339 chr10:115457341 nonsynonymous SNV 0.056 0 23 hm5C_associated_SNPs_67403 0 0 1 0 2 CASP7 chr10:115457253 3'AG 115457253 Downstream 89bp
chr10 115457341 115457341 1 + C T ESCA 115457339 + 115457319 115457359 41 GATGCTAAGCCAGACCGGTCCTCGTTTGTACCGTCCCTCTT GATGCTAAGCCAGACCGGTCCTTGTTTGTACCGTCCCTCTT < 41bp 0.744176026025645 0.471870166105556 0.1428968 0.032766223 prediction 0.488352052051289 Functional Loss - CASP7 ENSG00000165806 CDS Human protein_coding chr10:115457339 chr10:115457341 nonsynonymous SNV 0.056 0 23 hm5C_associated_SNPs_67403 0 0 1 0 2 CASP7 chr10:115457362 5'GT 115457362 Upstream 22bp
chr11 76823690 76823690 1 + C T PRAD 76823688 + 76823668 76823708 41 CCCGAAAAGCCCAACGCCTACGCGGGCATCTTCCACTTCCA CCCGAAAAGCCCAACGCCTACGTGGGCATCTTCCACTTCCA < 41bp 0.795865266723236 0.551690119080833 0.13557354 0.096839815 prediction 0.488350295284805 Functional Loss - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76823688 chr11:76823690 nonsynonymous SNV 0.599 3 23 hm5C_associated_SNPs_67404 0 0 1 0 1 CAPN5 chr11:76823635 3'AG 76823635 Downstream 56bp
chr2 42508074 42508074 1 + G T UCEC 42508072 + 42508052 42508092 41 GTTGACAACTATGATGACATCAGAACGGAACTGCCTCCTGA GTTGACAACTATGATGACATCATAACGGAACTGCCTCCTGA < 41bp 0.744173442473869 0.413208640709687 0.1617055 0.048714787 prediction 0.488346884947738 Functional Loss - EML4 ENSG00000143924 CDS Human protein_coding chr2:42508072 chr2:42508074 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_67405 0 0 1 0 2 EML4 chr2:42507990 3'AG 42507990 Downstream 85bp
chr2 42508074 42508074 1 + G T UCEC 42508072 + 42508052 42508092 41 GTTGACAACTATGATGACATCAGAACGGAACTGCCTCCTGA GTTGACAACTATGATGACATCATAACGGAACTGCCTCCTGA < 41bp 0.744173442473869 0.413208640709687 0.1617055 0.048714787 prediction 0.488346884947738 Functional Loss - EML4 ENSG00000143924 CDS Human protein_coding chr2:42508072 chr2:42508074 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_67405 0 0 1 0 2 EML4 chr2:42508113 5'GT 42508113 Upstream 40bp
chr12 1754998 1754998 1 + C T UCEC 1754996 + 1754976 1755016 41 CAGACGTAGCCTGCAAATGCCACGGCGTCTCGGGGTCCTGC CAGACGTAGCCTGCAAATGCCATGGCGTCTCGGGGTCCTGC < 41bp 0.744172907689221 0.484675381442277 0.1665979 0.07508239 prediction 0.488345815378441 Functional Loss - WNT5B ENSG00000111186 CDS Human protein_coding chr12:1754996 chr12:1754998 synonymous SNV . 0 23 hm5C_associated_SNPs_67406 0 0 0 0 1 WNT5B chr12:1754960 3'AG 1754960 Downstream 39bp
chr17 40665946 40665946 1 + C T SKCM 40665944 + 40665924 40665964 41 GAGTACTGCCTGGGCTGCATCTCCAACACTGCCTCCTACTT GAGTACTGCCTGGGCTGCATCTTCAACACTGCCTCCTACTT < 41bp 0.84827929223343 0.604107111098693 0.9626059 0.33449 prediction 0.488344362269476 Functional Loss - ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40665944 chr17:40665946 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_67407 0 0 1 0 2 ATP6V0A1 chr17:40665879 3'AG 40665879 Downstream 68bp
chr17 40665946 40665946 1 + C T SKCM 40665944 + 40665924 40665964 41 GAGTACTGCCTGGGCTGCATCTCCAACACTGCCTCCTACTT GAGTACTGCCTGGGCTGCATCTTCAACACTGCCTCCTACTT < 41bp 0.84827929223343 0.604107111098693 0.9626059 0.33449 prediction 0.488344362269476 Functional Loss - ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40665944 chr17:40665946 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_67407 0 0 1 0 2 ATP6V0A1 chr17:40665996 5'GT 40665996 Upstream 51bp
chr10 22016839 22016839 1 + G C LUSC 22016838 + 22016818 22016858 41 TTGGCAGAGGAAGCTCACCCCGAGGAAGTCTCTCGCCACGG TTGGCAGAGGAAGCTCACCCCCAGGAAGTCTCTCGCCACGG < 41bp 0.840129811442002 0.595963001628454 0.8599999 0.13249117 prediction 0.488333619627096 Functional Loss - MLLT10 ENSG00000078403 CDS Human protein_coding chr10:22016838 chr10:22016839 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_67408 0 0 1 0 2 MLLT10 chr10:22016785 3'AG 22016785 Downstream 55bp
chr10 22016839 22016839 1 + G C LUSC 22016838 + 22016818 22016858 41 TTGGCAGAGGAAGCTCACCCCGAGGAAGTCTCTCGCCACGG TTGGCAGAGGAAGCTCACCCCCAGGAAGTCTCTCGCCACGG < 41bp 0.840129811442002 0.595963001628454 0.8599999 0.13249117 prediction 0.488333619627096 Functional Loss - MLLT10 ENSG00000078403 CDS Human protein_coding chr10:22016838 chr10:22016839 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_67408 0 0 1 0 2 MLLT10 chr10:22016857 5'GT 22016857 Upstream 19bp
chr2 113482784 113482784 1 + G T UCEC 113482782 + 113482762 113482802 41 GCTCCACGTGGGCACCTACACAGGGCCCCACCAGCACTGTG GCTCCACGTGGGCACCTACACATGGCCCCACCAGCACTGTG < 41bp 0.9016202369373 0.657460621647366 0.8409835 0.11323747 prediction 0.488319230579869 Functional Loss - NT5DC4 ENSG00000144130 CDS Human protein_coding chr2:113482782 chr2:113482784 nonsynonymous SNV 0.004 4 23 hm5C_associated_SNPs_67412 0 0 0 0 2 NT5DC4 chr2:113482751 3'AG 113482751 Downstream 34bp
chr2 113482784 113482784 1 + G T UCEC 113482782 + 113482762 113482802 41 GCTCCACGTGGGCACCTACACAGGGCCCCACCAGCACTGTG GCTCCACGTGGGCACCTACACATGGCCCCACCAGCACTGTG < 41bp 0.9016202369373 0.657460621647366 0.8409835 0.11323747 prediction 0.488319230579869 Functional Loss - NT5DC4 ENSG00000144130 CDS Human protein_coding chr2:113482782 chr2:113482784 nonsynonymous SNV 0.004 4 23 hm5C_associated_SNPs_67412 0 0 0 0 2 NT5DC4 chr2:113482817 5'GT 113482817 Upstream 34bp
chr18 61378608 61378608 1 + G T LUAD 61378606 + 61378586 61378626 41 TACTGTAGACTCATTAAAACCAGGGTTCAAGGACTCACCTA TACTGTAGACTCATTAAAACCATGGTTCAAGGACTCACCTA < 41bp 0.744153190322588 0.432972118354267 0.90392673 0.058528066 prediction 0.488306380645176 Functional Loss - SERPINB11 ENSG00000206072 CDS Human protein_coding chr18:61378606 chr18:61378608 unknown 0.001 1 23 hm5C_associated_SNPs_67413 0 0 0 0 2 SERPINB11 chr18:61378569 3'AG 61378569 Downstream 40bp
chr18 61378608 61378608 1 + G T LUAD 61378606 + 61378586 61378626 41 TACTGTAGACTCATTAAAACCAGGGTTCAAGGACTCACCTA TACTGTAGACTCATTAAAACCATGGTTCAAGGACTCACCTA < 41bp 0.744153190322588 0.432972118354267 0.90392673 0.058528066 prediction 0.488306380645176 Functional Loss - SERPINB11 ENSG00000206072 CDS Human protein_coding chr18:61378606 chr18:61378608 unknown 0.001 1 23 hm5C_associated_SNPs_67413 0 0 0 0 2 SERPINB11 chr18:61378628 5'GT 61378628 Upstream 21bp
chr1 205027156 205027156 1 + G A rs12076297 205027153 + 205027133 205027173 41 CCACGGAGGAGCAGGTGTTGCTGGCATGCCGCGCCCGGGCC CCACGGAGGAGCAGGTGTTGCTGACATGCCGCGCCCGGGCC < 41bp 0.744151629539291 0.489256651506674 0.83028334 0.45275438 prediction 0.488303259078581 Functional Loss - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205027153 chr1:205027156 nonsynonymous SNV 0.975 0 24 hm5C_associated_SNPs_67414 0 0 0 0 1 CNTN2 chr1:205027193 5'GT 205027193 Upstream 38bp
chr6 32609299 32609299 1 + A C LIHC 32609298 + 32609278 32609318 41 GCAAAACACAACTTGAACATCATGATTAAACGCTACAACTC GCAAAACACAACTTGAACATCCTGATTAAACGCTACAACTC < 41bp 0.78043030054935 0.5362838419521 0.1039297 0.08523238 prediction 0.488292917194501 Functional Loss - HLA-DQA1 ENSG00000196735 CDS Human protein_coding chr6:32609298 chr6:32609299 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_67416 0 0 0 1 1 HLA-DQA1 chr6:32609335 5'GT 32609335 Upstream 37bp
chr5 176813035 176813035 1 + G A SKCM 176813032 + 176813012 176813052 41 CTGCCTATGCCTTCCCCAGCCTGGGCCCTGTGGCCCTTGCT CTGCCTATGCCTTCCCCAGCCTGAGCCCTGTGGCCCTTGCT < 41bp 0.759199583400798 0.51505539585734 0.4848253 0.22955248 prediction 0.488288375086916 Functional Loss - SLC34A1 ENSG00000131183 CDS Human protein_coding chr5:176813032 chr5:176813035 nonsynonymous SNV 0.193 0 24 hm5C_associated_SNPs_67417 0 0 0 0 1 SLC34A1 chr5:176812988 3'AG 176812988 Downstream 48bp
chr20 16730565 16730565 1 + G T LUAD 16730562 + 16730542 16730582 41 ACTTAGGTTTATGGTGATGGCCAGGACGAGATGGGAGTCGT ACTTAGGTTTATGGTGATGGCCATGACGAGATGGGAGTCGT < 41bp 0.744142663328123 0.3577351813203 0.20095897 0.046410322 prediction 0.488285326656245 Functional Loss - OTOR ENSG00000125879 CDS Human protein_coding chr20:16730562 chr20:16730565 nonsynonymous SNV 0.970 0 24 hm5C_associated_SNPs_67418 0 0 0 0 2 OTOR chr20:16730548 3'AG 16730548 Downstream 18bp
chr20 16730565 16730565 1 + G T LUAD 16730562 + 16730542 16730582 41 ACTTAGGTTTATGGTGATGGCCAGGACGAGATGGGAGTCGT ACTTAGGTTTATGGTGATGGCCATGACGAGATGGGAGTCGT < 41bp 0.744142663328123 0.3577351813203 0.20095897 0.046410322 prediction 0.488285326656245 Functional Loss - OTOR ENSG00000125879 CDS Human protein_coding chr20:16730562 chr20:16730565 nonsynonymous SNV 0.970 0 24 hm5C_associated_SNPs_67418 0 0 0 0 2 OTOR chr20:16730655 5'GT 16730655 Upstream 91bp
chr12 111748391 111748391 1 + C T STAD 111748389 + 111748369 111748409 41 CCCAAGCCCTGGCGCAAGCTCACGGTGAAGGGCAAGGAGCC CCCAAGCCCTGGCGCAAGCTCATGGTGAAGGGCAAGGAGCC < 41bp 0.74414093943344 0.484996859540699 0.44738662 0.79560626 prediction 0.48828187886688 Functional Loss - CUX2 ENSG00000111249 CDS Human protein_coding chr12:111748389 chr12:111748391 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_67419 0 0 0 0 1 CUX2 chr12:111748486 5'GT 111748486 Upstream 96bp
chr1 150919402 150919402 1 + G A HNSC 150919399 + 150919379 150919419 41 GTGGATCTATCGAGGCTCTACACGGCTGGAGCCCATGTTCA GTGGATCTATCGAGGCTCTACACAGCTGGAGCCCATGTTCA < 41bp 0.745671295026634 0.501534641160708 0.14220262 0.088620126 prediction 0.488273307731852 Functional Loss - SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150919399 chr1:150919402 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_67420 0 0 1 0 2 SETDB1 chr1:150919362 3'AG 150919362 Downstream 41bp
chr1 150919402 150919402 1 + G A HNSC 150919399 + 150919379 150919419 41 GTGGATCTATCGAGGCTCTACACGGCTGGAGCCCATGTTCA GTGGATCTATCGAGGCTCTACACAGCTGGAGCCCATGTTCA < 41bp 0.745671295026634 0.501534641160708 0.14220262 0.088620126 prediction 0.488273307731852 Functional Loss - SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150919399 chr1:150919402 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_67420 0 0 1 0 2 SETDB1 chr1:150919488 5'GT 150919488 Upstream 87bp
chr17 32955650 32955650 1 + C T BLCA 32955648 + 32955628 32955668 41 AGTGGCCAGTGGCATGTGACCTCGGAGCTGCTGACTGGGGC AGTGGCCAGTGGCATGTGACCTTGGAGCTGCTGACTGGGGC < 41bp 0.815695729947272 0.571565175790558 0.6015336 0.32402387 prediction 0.488261108313429 Functional Loss - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32955648 chr17:32955650 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_67421 0 0 1 0 1 TMEM132E chr17:32955728 5'GT 32955728 Upstream 79bp
chr19 56160660 56160660 1 + C T BLCA 56160658 + 56160638 56160678 41 CTTTTACAGTCTGAGCCCCTCTCGGAGAAACTTCGAGGGTG CTTTTACAGTCTGAGCCCCTCTTGGAGAAACTTCGAGGGTG < 41bp 0.744126810341929 0.481801872725137 0.39187387 0.29249159 prediction 0.488253620683858 Functional Loss - CCDC106 ENSG00000173581 CDS Human protein_coding chr19:56160658 chr19:56160660 nonsynonymous SNV 0.269 2 23 hm5C_associated_SNPs_67422 0 0 1 0 1 CCDC106 chr19:56160571 3'AG 56160571 Downstream 90bp
chr2 131128846 131128846 1 + A C rs4380289 131128842 + 131128822 131128862 41 ACTTCTCGCCATACCCCGCCCACCAGGAGGGGTCCTCAGGT ACTTCTCGCCATACCCCGCCCACCCGGAGGGGTCCTCAGGT < 41bp 0.744124649763296 0.31496639137069 0.12818953 0.08010641 prediction 0.488249299526592 Functional Loss - PTPN18 ENSG00000072135 CDS Human protein_coding chr2:131128842 chr2:131128846 synonymous SNV . 0 25 hm5C_associated_SNPs_67423 0 0 1 0 2 PTPN18 chr2:131128772 3'AG 131128772 Downstream 75bp
chr2 131128846 131128846 1 + A C rs4380289 131128842 + 131128822 131128862 41 ACTTCTCGCCATACCCCGCCCACCAGGAGGGGTCCTCAGGT ACTTCTCGCCATACCCCGCCCACCCGGAGGGGTCCTCAGGT < 41bp 0.744124649763296 0.31496639137069 0.12818953 0.08010641 prediction 0.488249299526592 Functional Loss - PTPN18 ENSG00000072135 CDS Human protein_coding chr2:131128842 chr2:131128846 synonymous SNV . 0 25 hm5C_associated_SNPs_67423 0 0 1 0 2 PTPN18 chr2:131128860 5'GT 131128860 Upstream 15bp
chr1 897049 897049 1 + C T ESCA 897047 + 897027 897067 41 GCCAGACCCACGTGACGCTGCACGACATCGACCCTCAGGCC GCCAGACCCACGTGACGCTGCATGACATCGACCCTCAGGCC < 41bp 0.787430031488327 0.543305901417051 0.3165537 0.29088825 prediction 0.488248260142552 Functional Loss - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:897047 chr1:897049 synonymous SNV . 0 23 hm5C_associated_SNPs_67424 0 0 0 0 1 KLHL17 chr1:897130 5'GT 897130 Upstream 82bp
chr19 33311992 33311992 1 + C T rs10408300 33311990 + 33311970 33312010 41 CAGAGCCCCCAGCCTGAGGACACGGGTGCAGAAGGAGGGGC CAGAGCCCCCAGCCTGAGGACATGGGTGCAGAAGGAGGGGC < 41bp 0.744118028961923 0.491670789870036 0.37602517 0.3591937 prediction 0.488236057923847 Functional Loss - TDRD12;SLC7A9 ENSG00000173809 CDS Human protein_coding chr19:33311990 chr19:33311992 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_67425 0 0 0 0 3 TDRD12;SLC7A9 chr19:33311895 3'AG 33311895 Downstream 98bp
chr19 33311992 33311992 1 + C T rs10408300 33311990 + 33311970 33312010 41 CAGAGCCCCCAGCCTGAGGACACGGGTGCAGAAGGAGGGGC CAGAGCCCCCAGCCTGAGGACATGGGTGCAGAAGGAGGGGC < 41bp 0.744118028961923 0.491670789870036 0.37602517 0.3591937 prediction 0.488236057923847 Functional Loss - TDRD12;SLC7A9 ENSG00000173809 CDS Human protein_coding chr19:33311990 chr19:33311992 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_67425 0 0 0 0 3 TDRD12;SLC7A9 chr19:33311939 3'AG 33311939 Downstream 54bp
chr19 33311992 33311992 1 + C T rs10408300 33311990 + 33311970 33312010 41 CAGAGCCCCCAGCCTGAGGACACGGGTGCAGAAGGAGGGGC CAGAGCCCCCAGCCTGAGGACATGGGTGCAGAAGGAGGGGC < 41bp 0.744118028961923 0.491670789870036 0.37602517 0.3591937 prediction 0.488236057923847 Functional Loss - TDRD12;SLC7A9 ENSG00000173809 CDS Human protein_coding chr19:33311990 chr19:33311992 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_67425 0 0 0 0 3 TDRD12;SLC7A9 chr19:33312045 5'GT 33312045 Upstream 54bp
chr7 128481359 128481359 1 + G C CESC 128481358 + 128481338 128481378 41 TCTGTGACGATGAGGACATCCGAGACTCACCCTTCATTGCC TCTGTGACGATGAGGACATCCCAGACTCACCCTTCATTGCC < 41bp 0.744115547695447 0.437215721885125 0.5682924 0.1597594 prediction 0.488231095390894 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128481358 chr7:128481359 nonsynonymous SNV 0.986 2 22 hm5C_associated_SNPs_67427 0 0 0 0 1 FLNC chr7:128481417 5'GT 128481417 Upstream 59bp
chr7 128481361 128481361 1 + G T LUAD 128481358 + 128481338 128481378 41 TCTGTGACGATGAGGACATCCGAGACTCACCCTTCATTGCC TCTGTGACGATGAGGACATCCGATACTCACCCTTCATTGCC < 41bp 0.744115547695447 0.365780586195073 0.5682924 0.31337315 prediction 0.488231095390894 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128481358 chr7:128481361 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_67428 0 0 0 0 1 FLNC chr7:128481417 5'GT 128481417 Upstream 57bp
chr17 40714711 40714711 1 + C T UCEC 40714709 + 40714689 40714729 41 TCCCTAGCCCCTCGCCTGGCCTCCATCCTGACCTCGGCGGC TCCCTAGCCCCTCGCCTGGCCTTCATCCTGACCTCGGCGGC < 41bp 0.799636493156221 0.555522378431201 0.9516988 0.087327 prediction 0.48822822945004 Functional Loss - COASY ENSG00000068120 CDS Human protein_coding chr17:40714709 chr17:40714711 nonsynonymous SNV 0.935 2 23 hm5C_associated_SNPs_67429 0 0 1 0 1 COASY chr17:40714630 3'AG 40714630 Downstream 82bp
chr1 159779256 159779256 1 + G A SKCM 159779253 + 159779233 159779273 41 GCTGACCCTGCTGTGGGGGACATGGTGCAGCTCCTCTGTGA GCTGACCCTGCTGTGGGGGACATAGTGCAGCTCCTCTGTGA < 41bp 0.744105320496711 0.49812641464617 0.78202033 0.6035466 prediction 0.488210640993423 Functional Loss - FCRL6 ENSG00000181036 CDS Human protein_coding chr1:159779253 chr1:159779256 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_67431 0 0 0 0 1 FCRL6 chr1:159779192 3'AG 159779192 Downstream 65bp
chrX 122387169 122387169 1 + C T CESC 122387167 + 122387147 122387187 41 ATTGCAGTCTGCTCCCAGTTCTCGAGAGGGGTGTATGCCAT ATTGCAGTCTGCTCCCAGTTCTTGAGAGGGGTGTATGCCAT < 41bp 0.838249951511726 0.594146335226086 0.5630191 0.22141337 prediction 0.488207232571279 Functional Loss - GRIA3 ENSG00000125675 CDS Human protein_coding chrX:122387167 chrX:122387169 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_67432 0 0 0 0 1 GRIA3 chrX:122387154 3'AG 122387154 Downstream 16bp
chrX 11129452 11129452 1 + A C rs772661172 11129451 + 11129431 11129471 41 ACGCCGGCGGTGACCGCAGCCACAGCGGTGACCGAGTGAGA ACGCCGGCGGTGACCGCAGCCCCAGCGGTGACCGAGTGAGA < 41bp 0.745791511723253 0.501691578069318 0.18021852 0.13928711 prediction 0.488199867307869 Functional Loss - HCCS ENSG00000004961 UTR5 Human protein_coding chrX:11129451 chrX:11129452 . . 0 22 hm5C_associated_SNPs_67436 0 0 1 0 1 HCCS chrX:11129543 5'GT 11129543 Upstream 92bp
chr17 72741068 72741068 1 + G T COAD 72741065 + 72741045 72741085 41 GAAGACGGAGAGACCTTGGCCAGGGTAAGTGATTGTCTGTG GAAGACGGAGAGACCTTGGCCAGTGTAAGTGATTGTCTGTG < 41bp 0.744098525471493 0.344089521388907 0.9072243 0.4758345 prediction 0.488197050942985 Functional Loss - RAB37 ENSG00000172794 CDS Human protein_coding chr17:72741065 chr17:72741068 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_67437 0 0 0 0 2 RAB37 chr17:72741012 3'AG 72741012 Downstream 57bp
chr17 72741068 72741068 1 + G T COAD 72741065 + 72741045 72741085 41 GAAGACGGAGAGACCTTGGCCAGGGTAAGTGATTGTCTGTG GAAGACGGAGAGACCTTGGCCAGTGTAAGTGATTGTCTGTG < 41bp 0.744098525471493 0.344089521388907 0.9072243 0.4758345 prediction 0.488197050942985 Functional Loss - RAB37 ENSG00000172794 CDS Human protein_coding chr17:72741065 chr17:72741068 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_67437 0 0 0 0 2 RAB37 chr17:72741068 3'AG 72741068 Downstream 1bp
chr1 111825997 111825997 1 + C T UCEC 111825995 + 111825975 111826015 41 AACAGCCCCCTCTACAAATACCCGACTGACACCGGCAGCAA AACAGCCCCCTCTACAAATACCTGACTGACACCGGCAGCAA < 41bp 0.748788201477894 0.504692594245209 0.28357124 0.5478774 prediction 0.488191214465371 Functional Loss - CHIAP2 ENSG00000203878 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:111825995 chr1:111825997 . . 0 23 hm5C_associated_SNPs_67439 0 0 0 0 2 CHIAP2 chr1:111825908 3'AG 111825908 Downstream 90bp
chr1 111825997 111825997 1 + C T UCEC 111825995 + 111825975 111826015 41 AACAGCCCCCTCTACAAATACCCGACTGACACCGGCAGCAA AACAGCCCCCTCTACAAATACCTGACTGACACCGGCAGCAA < 41bp 0.748788201477894 0.504692594245209 0.28357124 0.5478774 prediction 0.488191214465371 Functional Loss - CHIAP2 ENSG00000203878 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:111825995 chr1:111825997 . . 0 23 hm5C_associated_SNPs_67439 0 0 0 0 2 CHIAP2 chr1:111826031 5'GT 111826031 Upstream 35bp
chr1 3319491 3319491 1 + G T UCEC 3319488 + 3319468 3319508 41 CTGGCTGAGGAGCTCAAGCCCGAGGGCCTTGGCGGTGGCAG CTGGCTGAGGAGCTCAAGCCCGATGGCCTTGGCGGTGGCAG < 41bp 0.744095222901324 0.464904634896879 0.93164897 0.44105515 prediction 0.488190445802647 Functional Loss - PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3319488 chr1:3319491 nonsynonymous SNV 0.030 1 24 hm5C_associated_SNPs_67440 0 0 0 0 1 PRDM16 chr1:3319562 5'GT 3319562 Upstream 72bp
chr12 124189157 124189157 1 + T C UCEC 124189156 + 124189136 124189176 41 GCCTGGATATTCCTGCTCACCTGAGCATCCGCATCCTCATC GCCTGGATATTCCTGCTCACCCGAGCATCCGCATCCTCATC < 41bp 0.749871773847999 0.505777546672464 0.056054115 0.20702708 prediction 0.48818845435107 Functional Loss - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124189156 chr12:124189157 nonsynonymous SNV 0.013 4 22 hm5C_associated_SNPs_67441 0 0 1 0 2 TCTN2 chr12:124189079 3'AG 124189079 Downstream 79bp
chr12 124189157 124189157 1 + T C UCEC 124189156 + 124189136 124189176 41 GCCTGGATATTCCTGCTCACCTGAGCATCCGCATCCTCATC GCCTGGATATTCCTGCTCACCCGAGCATCCGCATCCTCATC < 41bp 0.749871773847999 0.505777546672464 0.056054115 0.20702708 prediction 0.48818845435107 Functional Loss - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124189156 chr12:124189157 nonsynonymous SNV 0.013 4 22 hm5C_associated_SNPs_67441 0 0 1 0 2 TCTN2 chr12:124189235 5'GT 124189235 Upstream 79bp
chr1 36557517 36557517 1 + C T STAD 36557515 + 36557495 36557535 41 GTCTCCTCCTCCCTAGTTTGCCCGGCTCTCGGCCCAGCTGA GTCTCCTCCTCCCTAGTTTGCCTGGCTCTCGGCCCAGCTGA < 41bp 0.744093943702538 0.493471766375824 0.4396569 0.4699576 prediction 0.488187887405075 Functional Loss - ADPRHL2 ENSG00000116863 CDS Human protein_coding chr1:36557515 chr1:36557517 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_67442 0 0 0 0 1 ADPRHL2 chr1:36557511 3'AG 36557511 Downstream 7bp
chr5 141309193 141309193 1 + G A ESCA 141309190 + 141309170 141309210 41 AGCCCCGATGGCCCAGCTCCCAGGCACACTGGCCTCAGGGA AGCCCCGATGGCCCAGCTCCCAGACACACTGGCCTCAGGGA < 41bp 0.764207679223084 0.520120348432573 0.8583429 0.47780174 prediction 0.488174661581021 Functional Loss - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141309190 chr5:141309193 synonymous SNV . 0 24 hm5C_associated_SNPs_67444 0 0 0 0 1 KIAA0141 chr5:141309147 3'AG 141309147 Downstream 47bp
chr12 96354263 96354263 1 + C T GBM 96354261 + 96354241 96354281 41 TTGGCAGAAATGGGGAAATACACGTGGACAATATAGACGTA TTGGCAGAAATGGGGAAATACATGTGGACAATATAGACGTA < 41bp 0.744086932270035 0.467899286539295 0.1898886 0.15453064 prediction 0.48817386454007 Functional Loss - AMDHD1 ENSG00000139344 CDS Human protein_coding chr12:96354261 chr12:96354263 synonymous SNV . 0 23 hm5C_associated_SNPs_67445 0 0 0 0 1 AMDHD1 chr12:96354176 3'AG 96354176 Downstream 88bp
chr4 41664903 41664903 1 + T C rs141344857 41664902 + 41664882 41664922 41 GTGGCCTTTGTGGAATTTCCCTCCAGCCCCCAGCTGAAGAA GTGGCCTTTGTGGAATTTCCCCCCAGCCCCCAGCTGAAGAA < 41bp 0.747103631874957 0.503022566791544 0.92913806 0.07987952 prediction 0.488162130166827 Functional Loss - LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41664902 chr4:41664903 nonsynonymous SNV 0.575 0 22 hm5C_associated_SNPs_67448 0 0 0 0 2 LIMCH1 chr4:41664838 3'AG 41664838 Downstream 66bp
chr4 41664903 41664903 1 + T C rs141344857 41664902 + 41664882 41664922 41 GTGGCCTTTGTGGAATTTCCCTCCAGCCCCCAGCTGAAGAA GTGGCCTTTGTGGAATTTCCCCCCAGCCCCCAGCTGAAGAA < 41bp 0.747103631874957 0.503022566791544 0.92913806 0.07987952 prediction 0.488162130166827 Functional Loss - LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41664902 chr4:41664903 nonsynonymous SNV 0.575 0 22 hm5C_associated_SNPs_67448 0 0 0 0 2 LIMCH1 chr4:41665001 5'GT 41665001 Upstream 99bp
chr2 238881826 238881826 1 + C T LUSC 238881824 + 238881804 238881844 41 ACGGCAGCCACAGCGTCCGACTCGACTCGGAGGGTTTCTGT ACGGCAGCCACAGCGTCCGACTTGACTCGGAGGGTTTCTGT < 41bp 0.74407397562555 0.474620645197474 0.1408419 0.065773696 prediction 0.4881479512511 Functional Loss - UBE2F ENSG00000184182;ENSG00000258984 CDS Human other chr2:238881824 chr2:238881826 nonsynonymous SNV 0.656 1 23 hm5C_associated_SNPs_67450 0 0 1 0 1 UBE2F chr2:238881867 5'GT 238881867 Upstream 42bp
chr2 102636172 102636172 1 + G T LUSC 102636169 + 102636149 102636189 41 GGACCACTCACTTACTCGTACACGATGTGGCCCTGGAAGAT GGACCACTCACTTACTCGTACACTATGTGGCCCTGGAAGAT < 41bp 0.744071373122072 0.339598339771654 0.04680887 0.025991648 prediction 0.488142746244145 Functional Loss - IL1R2 ENSG00000115590 CDS Human protein_coding chr2:102636169 chr2:102636172 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_67453 0 0 0 0 1 IL1R2 chr2:102636100 3'AG 102636100 Downstream 73bp
chr3 33425643 33425643 1 + G T HNSC 33425640 + 33425620 33425660 41 ACTGCCGAGGCCTGGAGCGCCTCGAGCTGTACGACTGCCAG ACTGCCGAGGCCTGGAGCGCCTCTAGCTGTACGACTGCCAG < 41bp 0.908455181638927 0.664384336164616 0.7108051 0.66034317 prediction 0.488141690948622 Functional Loss - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33425640 chr3:33425643 stopgain 0.982 1 24 hm5C_associated_SNPs_67454 0 0 0 4 1 FBXL2 chr3:33425693 5'GT 33425693 Upstream 51bp
chr3 134825426 134825426 1 + T C ESCA 134825425 + 134825405 134825445 41 TTACCGAGCGGACTTTGACCCTCCAGAAGTGGCATGCACTA TTACCGAGCGGACTTTGACCCCCCAGAAGTGGCATGCACTA < 41bp 0.744069820067673 0.479621665498556 0.952464 0.047471523 prediction 0.488139640135346 Functional Loss - EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134825425 chr3:134825426 synonymous SNV . 0 22 hm5C_associated_SNPs_67455 0 0 0 0 1 EPHB1 chr3:134825445 5'GT 134825445 Upstream 20bp
chr3 134825429 134825429 1 + A T LUSC 134825425 + 134825405 134825445 41 TTACCGAGCGGACTTTGACCCTCCAGAAGTGGCATGCACTA TTACCGAGCGGACTTTGACCCTCCTGAAGTGGCATGCACTA < 41bp 0.744069820067673 0.396260865766707 0.952464 0.19875306 prediction 0.488139640135346 Functional Loss - EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134825425 chr3:134825429 synonymous SNV . 0 25 hm5C_associated_SNPs_67456 0 0 0 0 1 EPHB1 chr3:134825445 5'GT 134825445 Upstream 17bp
chr1 11766675 11766675 1 + C T UCEC 11766673 + 11766653 11766693 41 TGGGACTGGCATTGCCCTACCCCGAGAAGGAGAACCGACCT TGGGACTGGCATTGCCCTACCCTGAGAAGGAGAACCGACCT < 41bp 0.803737044987337 0.559693990859007 0.060255855 0.09238729 prediction 0.488086108256661 Functional Loss - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11766673 chr1:11766675 synonymous SNV . 0 23 hm5C_associated_SNPs_67463 0 0 0 0 1 DRAXIN chr1:11766766 5'GT 11766766 Upstream 92bp
chr8 27528492 27528492 1 + C T STAD 27528490 + 27528470 27528510 41 GGGCCTGTTGGCGGCAGAGGCCCGAAAGGAGACCCCGGCAG GGGCCTGTTGGCGGCAGAGGCCTGAAAGGAGACCCCGGCAG < 41bp 0.783786219073384 0.539750183309333 0.3957516 0.2731821 prediction 0.488072071528101 Functional Loss - SCARA3 ENSG00000168077 CDS Human protein_coding chr8:27528490 chr8:27528492 nonsynonymous SNV 0.182 3 23 hm5C_associated_SNPs_67465 0 0 0 0 1 SCARA3 chr8:27528417 3'AG 27528417 Downstream 76bp
chr6 71567878 71567878 1 + C T LUSC 71567876 + 71567856 71567896 41 TGGTGGGACAAATGGGTGCACCCCAGAGTAAGTTTGGCCTG TGGTGGGACAAATGGGTGCACCTCAGAGTAAGTTTGGCCTG < 41bp 0.822356309642061 0.578336135820056 0.45850477 0.45730507 prediction 0.48804034764401 Functional Loss - SMAP1 ENSG00000112305 CDS Human protein_coding chr6:71567876 chr6:71567878 synonymous SNV . 0 23 hm5C_associated_SNPs_67470 0 0 0 0 1 SMAP1 chr6:71567932 5'GT 71567932 Upstream 55bp
chr19 41040047 41040047 1 + G T LUAD 41040044 + 41040024 41040064 41 CGGCCTCCGTGCGGAAGAAGCTGGGCGAGATCCGCCAGTGC CGGCCTCCGTGCGGAAGAAGCTGTGCGAGATCCGCCAGTGC < 41bp 0.744017152486324 0.353403722734353 0.88543224 0.4215142 prediction 0.488034304972649 Functional Loss - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41040044 chr19:41040047 nonsynonymous SNV 0.981 4 24 hm5C_associated_SNPs_67471 0 0 0 0 1 SPTBN4 chr19:41039987 3'AG 41039987 Downstream 61bp
chr2 242509637 242509637 1 + C T LUSC 242509635 + 242509615 242509655 41 AGCCTGCCATGGTCCACGCCCTCGTGGACTGCCTGGGGGAG AGCCTGCCATGGTCCACGCCCTTGTGGACTGCCTGGGGGAG < 41bp 0.744011128325783 0.482158362095424 0.232068 0.2323156 prediction 0.488022256651566 Functional Loss - BOK ENSG00000176720 CDS Human protein_coding chr2:242509635 chr2:242509637 synonymous SNV . 0 23 hm5C_associated_SNPs_67476 0 0 1 0 2 BOK chr2:242509540 3'AG 242509540 Downstream 98bp
chr2 242509637 242509637 1 + C T LUSC 242509635 + 242509615 242509655 41 AGCCTGCCATGGTCCACGCCCTCGTGGACTGCCTGGGGGAG AGCCTGCCATGGTCCACGCCCTTGTGGACTGCCTGGGGGAG < 41bp 0.744011128325783 0.482158362095424 0.232068 0.2323156 prediction 0.488022256651566 Functional Loss - BOK ENSG00000176720 CDS Human protein_coding chr2:242509635 chr2:242509637 synonymous SNV . 0 23 hm5C_associated_SNPs_67476 0 0 1 0 2 BOK chr2:242509703 5'GT 242509703 Upstream 67bp
chr10 75510968 75510968 1 + A C LUAD 75510967 + 75510947 75510987 41 AGTTTGGCCAAGGAGATGTACAGAATGGGCCAAGCTCCACT AGTTTGGCCAAGGAGATGTACCGAATGGGCCAAGCTCCACT < 41bp 0.747918625534064 0.50390840820956 0.2790568 0.098246545 prediction 0.488020434649008 Functional Loss - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75510967 chr10:75510968 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_67477 0 0 1 0 1 SEC24C chr10:75511001 5'GT 75511001 Upstream 34bp
chr15 67479712 67479712 1 + T C COAD 67479711 + 67479691 67479731 41 TGTTTTTGGCAGGATGCAACCTGAAGATCTTCAACAACCAG TGTTTTTGGCAGGATGCAACCCGAAGATCTTCAACAACCAG < 41bp 0.762902503855422 0.518899021817041 0.17056343 0.1842834 prediction 0.488006964076762 Functional Loss - SMAD3 ENSG00000166949 CDS Human protein_coding chr15:67479711 chr15:67479712 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_67480 0 0 1 0 1 SMAD3 chr15:67479703 3'AG 67479703 Downstream 10bp
chr1 2429980 2429980 1 + C T COAD 2429978 + 2429958 2429998 41 TCAGGCGTGTTCAACCCCAACTCGGAGGACCCCCTGCCCGG TCAGGCGTGTTCAACCCCAACTTGGAGGACCCCCTGCCCGG < 41bp 0.776341062776055 0.532339981422987 0.38550848 0.48157755 prediction 0.488002162706136 Functional Loss - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2429978 chr1:2429980 nonsynonymous SNV 0.883 0 23 hm5C_associated_SNPs_67482 0 0 0 0 1 PLCH2 chr1:2429962 3'AG 2429962 Downstream 19bp
chr8 92401613 92401613 1 + G T LUSC 92401610 + 92401590 92401630 41 ATGAGAAGTGTTATTTAATCCTGGATTGCAGTGGATTTACC ATGAGAAGTGTTATTTAATCCTGTATTGCAGTGGATTTACC < 41bp 0.744000730476525 0.381580382429682 0.31335202 0.31344903 prediction 0.488001460953051 Functional Loss - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92401610 chr8:92401613 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_67483 0 0 1 1 2 SLC26A7 chr8:92401566 3'AG 92401566 Downstream 48bp
chr8 92401613 92401613 1 + G T LUSC 92401610 + 92401590 92401630 41 ATGAGAAGTGTTATTTAATCCTGGATTGCAGTGGATTTACC ATGAGAAGTGTTATTTAATCCTGTATTGCAGTGGATTTACC < 41bp 0.744000730476525 0.381580382429682 0.31335202 0.31344903 prediction 0.488001460953051 Functional Loss - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92401610 chr8:92401613 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_67483 0 0 1 1 2 SLC26A7 chr8:92401666 5'GT 92401666 Upstream 54bp
chr8 92401612 92401612 1 + G T LUSC 92401610 + 92401590 92401630 41 ATGAGAAGTGTTATTTAATCCTGGATTGCAGTGGATTTACC ATGAGAAGTGTTATTTAATCCTTGATTGCAGTGGATTTACC < 41bp 0.744000730476525 0.425222980199697 0.31335202 0.104470134 prediction 0.488001460953051 Functional Loss - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92401610 chr8:92401612 synonymous SNV . 0 23 hm5C_associated_SNPs_67484 0 0 0 1 2 SLC26A7 chr8:92401566 3'AG 92401566 Downstream 47bp
chr8 92401612 92401612 1 + G T LUSC 92401610 + 92401590 92401630 41 ATGAGAAGTGTTATTTAATCCTGGATTGCAGTGGATTTACC ATGAGAAGTGTTATTTAATCCTTGATTGCAGTGGATTTACC < 41bp 0.744000730476525 0.425222980199697 0.31335202 0.104470134 prediction 0.488001460953051 Functional Loss - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92401610 chr8:92401612 synonymous SNV . 0 23 hm5C_associated_SNPs_67484 0 0 0 1 2 SLC26A7 chr8:92401666 5'GT 92401666 Upstream 55bp
chr8 75276278 75276278 1 + C T LUSC 75276276 + 75276256 75276296 41 TCACCCTGGCAGACGTCTCACTCGCTGTCACATTGCATCGA TCACCCTGGCAGACGTCTCACTTGCTGTCACATTGCATCGA < 41bp 0.744000527834774 0.467698725761841 0.031926364 0.028115213 prediction 0.488001055669547 Functional Loss - GDAP1 ENSG00000104381 CDS Human protein_coding chr8:75276276 chr8:75276278 synonymous SNV . 0 23 hm5C_associated_SNPs_67485 0 0 1 0 1 GDAP1 chr8:75276220 3'AG 75276220 Downstream 59bp
chr14 57070588 57070588 1 + C T SARC 57070586 + 57070566 57070606 41 TGCGGGGGTGTTTTCATTTTCTCGTCTAACATGGCAGTGGT TGCGGGGGTGTTTTCATTTTCTTGTCTAACATGGCAGTGGT < 41bp 0.743986064581034 0.464101689690941 0.096022844 0.09681946 prediction 0.487972129162068 Functional Loss - TMEM260 ENSG00000070269 CDS Human protein_coding chr14:57070586 chr14:57070588 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_67487 0 0 0 0 1 TMEM260 chr14:57070533 3'AG 57070533 Downstream 56bp
chr4 83821965 83821965 1 + A C UCEC 83821961 + 83821941 83821981 41 CCACGTAACAAGAAGATGACCCGAAGTTGCTCCGCAGTGGG CCACGTAACAAGAAGATGACCCGACGTTGCTCCGCAGTGGG < 41bp 0.743983137270166 0.361868629088932 0.1716086 0.15225583 prediction 0.487966274540332 Functional Loss - THAP9 ENSG00000168152 CDS Human protein_coding chr4:83821961 chr4:83821965 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_67489 0 0 0 0 1 THAP9 chr4:83822035 5'GT 83822035 Upstream 71bp
chr1 11596425 11596425 1 + G T HNSC 11596423 + 11596403 11596443 41 GGCGTACGCTGGAGGCCGTGCGGCACGTGGGCGTGGCCATC GGCGTACGCTGGAGGCCGTGCGTCACGTGGGCGTGGCCATC < 41bp 0.743980621239424 0.410972540352743 0.8745756 0.75707656 prediction 0.487961242478848 Functional Loss - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11596423 chr1:11596425 nonsynonymous SNV 0.206 0 23 hm5C_associated_SNPs_67490 0 0 0 0 1 DISP3 chr1:11596381 3'AG 11596381 Downstream 45bp
chr16 847743 847743 1 + C T rs2294451 847741 + 847721 847761 41 GTCGTCAGGAGCACAGCAGTCCCGAGTGCAGGTGTGTGTGG GTCGTCAGGAGCACAGCAGTCCTGAGTGCAGGTGTGTGTGG < 41bp 0.763926648366223 0.519954836487957 0.29319292 0.26804295 prediction 0.487943623756531 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:847741 chr16:847743 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_67492 0 0 1 0 2 CHTF18 chr16:847694 3'AG 847694 Downstream 50bp
chr16 847743 847743 1 + C T rs2294451 847741 + 847721 847761 41 GTCGTCAGGAGCACAGCAGTCCCGAGTGCAGGTGTGTGTGG GTCGTCAGGAGCACAGCAGTCCTGAGTGCAGGTGTGTGTGG < 41bp 0.763926648366223 0.519954836487957 0.29319292 0.26804295 prediction 0.487943623756531 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:847741 chr16:847743 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_67492 0 0 1 0 2 CHTF18 chr16:847751 5'GT 847751 Upstream 9bp
chr1 19583636 19583636 1 + C T rs1126682 19583634 + 19583614 19583654 41 ATGAATACAAAGACAACCTGCACCAGGTAAGTCTCTGGCCC ATGAATACAAAGACAACCTGCATCAGGTAAGTCTCTGGCCC < 41bp 0.818052203069007 0.57408352832909 0.30068564 0.31438202 prediction 0.487937349479833 Functional Loss - MRTO4 ENSG00000053372 CDS Human protein_coding chr1:19583634 chr1:19583636 synonymous SNV . 0 23 hm5C_associated_SNPs_67493 0 0 1 0 2 MRTO4 chr1:19583558 3'AG 19583558 Downstream 79bp
chr1 19583636 19583636 1 + C T rs1126682 19583634 + 19583614 19583654 41 ATGAATACAAAGACAACCTGCACCAGGTAAGTCTCTGGCCC ATGAATACAAAGACAACCTGCATCAGGTAAGTCTCTGGCCC < 41bp 0.818052203069007 0.57408352832909 0.30068564 0.31438202 prediction 0.487937349479833 Functional Loss - MRTO4 ENSG00000053372 CDS Human protein_coding chr1:19583634 chr1:19583636 synonymous SNV . 0 23 hm5C_associated_SNPs_67493 0 0 1 0 2 MRTO4 chr1:19583639 5'GT 19583639 Upstream 4bp
chr10 95380456 95380456 1 + C T LIHC 95380454 + 95380434 95380474 41 ACTAAGAACCTGCTGGCAACCCCGATCGTGGTGGGCAAGGA ACTAAGAACCTGCTGGCAACCCTGATCGTGGTGGGCAAGGA < 41bp 0.820713437572014 0.576754415249045 0.06611386 0.04448411 prediction 0.487918044645939 Functional Loss - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95380454 chr10:95380456 nonsynonymous SNV 0.549 4 23 hm5C_associated_SNPs_67496 0 0 0 0 2 PDE6C chr10:95380389 3'AG 95380389 Downstream 68bp
chr10 95380456 95380456 1 + C T LIHC 95380454 + 95380434 95380474 41 ACTAAGAACCTGCTGGCAACCCCGATCGTGGTGGGCAAGGA ACTAAGAACCTGCTGGCAACCCTGATCGTGGTGGGCAAGGA < 41bp 0.820713437572014 0.576754415249045 0.06611386 0.04448411 prediction 0.487918044645939 Functional Loss - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95380454 chr10:95380456 nonsynonymous SNV 0.549 4 23 hm5C_associated_SNPs_67496 0 0 0 0 2 PDE6C chr10:95380541 5'GT 95380541 Upstream 86bp
chrX 142121876 142121876 1 + A T rs10482390 142121872 + 142121852 142121892 41 TTTGAAAGAGACAGAAAAAGCAAAATATCCAACATTAGTGT TTTGAAAGAGACAGAAAAAGCAAATTATCCAACATTAGTGT < 41bp 0.848914990814405 0.604960954061018 0.37797734 0.36992365 prediction 0.487908073506774 Functional Loss - SPANXN4 ENSG00000189326 CDS Human protein_coding chrX:142121872 chrX:142121876 nonsynonymous SNV 0.101 1 25 hm5C_associated_SNPs_67500 0 0 0 0 1 SPANXN4 chrX:142121811 3'AG 142121811 Downstream 66bp
chr20 30662431 30662431 1 + G A SKCM 30662428 + 30662408 30662448 41 CTCCCTCATGTCCCTCAGATCCGGGGAGTGGTGGAAGGCTC CTCCCTCATGTCCCTCAGATCCGAGGAGTGGTGGAAGGCTC < 41bp 0.748605521937904 0.50465519498075 0.9129052 0.8101447 prediction 0.487900653914308 Functional Loss - HCK ENSG00000101336 CDS Human protein_coding chr20:30662428 chr20:30662431 nonsynonymous SNV 0.910 4 24 hm5C_associated_SNPs_67501 0 0 0 0 2 HCK chr20:30662426 3'AG 30662426 Downstream 6bp
chr20 30662431 30662431 1 + G A SKCM 30662428 + 30662408 30662448 41 CTCCCTCATGTCCCTCAGATCCGGGGAGTGGTGGAAGGCTC CTCCCTCATGTCCCTCAGATCCGAGGAGTGGTGGAAGGCTC < 41bp 0.748605521937904 0.50465519498075 0.9129052 0.8101447 prediction 0.487900653914308 Functional Loss - HCK ENSG00000101336 CDS Human protein_coding chr20:30662428 chr20:30662431 nonsynonymous SNV 0.910 4 24 hm5C_associated_SNPs_67501 0 0 0 0 2 HCK chr20:30662524 5'GT 30662524 Upstream 94bp
chr16 84228937 84228937 1 + T C UCEC 84228936 + 84228916 84228956 41 AGGGGCCACGTGAAGGAGATCTACAAGCTGGTGGCTCTGGG AGGGGCCACGTGAAGGAGATCCACAAGCTGGTGGCTCTGGG < 41bp 0.768141517977905 0.524192048383217 0.90595233 0.33006316 prediction 0.487898939189376 Functional Loss - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84228936 chr16:84228937 nonsynonymous SNV 0.587 3 22 hm5C_associated_SNPs_67504 0 0 0 0 2 ADAD2 chr16:84228872 3'AG 84228872 Downstream 66bp
chr16 84228937 84228937 1 + T C UCEC 84228936 + 84228916 84228956 41 AGGGGCCACGTGAAGGAGATCTACAAGCTGGTGGCTCTGGG AGGGGCCACGTGAAGGAGATCCACAAGCTGGTGGCTCTGGG < 41bp 0.768141517977905 0.524192048383217 0.90595233 0.33006316 prediction 0.487898939189376 Functional Loss - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84228936 chr16:84228937 nonsynonymous SNV 0.587 3 22 hm5C_associated_SNPs_67504 0 0 0 0 2 ADAD2 chr16:84228902 3'AG 84228902 Downstream 36bp
chr16 332493 332493 1 + C T rs199970245 332491 + 332471 332511 41 ACAGGGAGATTGTCAGCGGCCTCAAGTGTCTGCACCACACC ACAGGGAGATTGTCAGCGGCCTTAAGTGTCTGCACCACACC < 41bp 0.749431851040458 0.505487167680065 0.47905716 0.41896543 prediction 0.487889366720785 Functional Loss - ARHGDIG ENSG00000242173 CDS Human protein_coding chr16:332491 chr16:332493 synonymous SNV . 0 23 hm5C_associated_SNPs_67506 0 0 1 0 2 ARHGDIG chr16:332467 3'AG 332467 Downstream 27bp
chr16 332493 332493 1 + C T rs199970245 332491 + 332471 332511 41 ACAGGGAGATTGTCAGCGGCCTCAAGTGTCTGCACCACACC ACAGGGAGATTGTCAGCGGCCTTAAGTGTCTGCACCACACC < 41bp 0.749431851040458 0.505487167680065 0.47905716 0.41896543 prediction 0.487889366720785 Functional Loss - ARHGDIG ENSG00000242173 CDS Human protein_coding chr16:332491 chr16:332493 synonymous SNV . 0 23 hm5C_associated_SNPs_67506 0 0 1 0 2 ARHGDIG chr16:332530 5'GT 332530 Upstream 38bp
chr8 146278499 146278499 1 + G A LUSC 146278496 + 146278476 146278516 41 GGTGTGTGGAGCAACTGGAGCTGGGCCTCAAGAGGCAGAAA GGTGTGTGGAGCAACTGGAGCTGAGCCTCAAGAGGCAGAAA < 41bp 0.743940729888077 0.49946966861677 0.4162934 0.32796925 prediction 0.487881459776154 Functional Loss - C8orf33 ENSG00000182307 CDS Human protein_coding chr8:146278496 chr8:146278499 nonsynonymous SNV 0.905 2 24 hm5C_associated_SNPs_67509 0 0 1 0 1 C8orf33 chr8:146278448 3'AG 146278448 Downstream 52bp
chr10 103986377 103986377 1 + G T UCEC 103986374 + 103986354 103986394 41 CCCTATAACTTCGAGCTGTCCAAGGACATGAGGCCCTTTTT CCCTATAACTTCGAGCTGTCCAATGACATGAGGCCCTTTTT < 41bp 0.743937492719107 0.352125896102299 0.81164616 0.13354737 prediction 0.487874985438213 Functional Loss - ELOVL3 ENSG00000119915 CDS Human protein_coding chr10:103986374 chr10:103986377 nonsynonymous SNV 0.476 0 24 hm5C_associated_SNPs_67510 0 0 0 0 1 ELOVL3 chr10:103986406 5'GT 103986406 Upstream 30bp
chr1 230883454 230883454 1 + G T UCEC 230883451 + 230883431 230883471 41 CCCCTTTGTGTGGAAACGACCAGGGGTGAGTGGGGCGAGCA CCCCTTTGTGTGGAAACGACCAGTGGTGAGTGGGGCGAGCA < 41bp 0.916867217124604 0.67293634406501 0.93064725 0.46452036 prediction 0.487861746119188 Functional Loss - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230883451 chr1:230883454 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_67511 0 0 0 0 1 CAPN9 chr1:230883455 5'GT 230883455 Upstream 2bp
chr2 99156090 99156090 1 + A T SKCM 99156086 + 99156066 99156106 41 TGGCAGAGAGCGTGCTCTCCCTGCACGTGCCCCGGCAGTTC TGGCAGAGAGCGTGCTCTCCCTGCTCGTGCCCCGGCAGTTC < 41bp 0.884159000278226 0.640232374627049 0.6594157 0.20248258 prediction 0.487853251302355 Functional Loss - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99156086 chr2:99156090 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_67512 0 0 1 0 1 INPP4A chr2:99156138 5'GT 99156138 Upstream 49bp
chr1 22927468 22927468 1 + C T LUAD 22927466 + 22927446 22927486 41 ACGCCCTGCACCAGCTCATGCTCGACTGTTGGCACAAGGAC ACGCCCTGCACCAGCTCATGCTTGACTGTTGGCACAAGGAC < 41bp 0.743920087825485 0.474114809921564 0.09879154 0.1025455 prediction 0.487840175650969 Functional Loss - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22927466 chr1:22927468 synonymous SNV . 0 23 hm5C_associated_SNPs_67514 0 0 0 0 1 EPHA8 chr1:22927391 3'AG 22927391 Downstream 78bp
chr9 130438929 130438929 1 + C T STAD 130438927 + 130438907 130438947 41 TGTCTTGTGCCCTCAGGCATCACGGAGGAAAACCTGAACAA TGTCTTGTGCCCTCAGGCATCATGGAGGAAAACCTGAACAA < 41bp 0.806189013556542 0.562273640465977 0.6548091 0.4290108 prediction 0.48783074618113 Functional Loss - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130438927 chr9:130438929 nonsynonymous SNV 0.973 4 23 hm5C_associated_SNPs_67516 1 0 1 0 1 STXBP1 chr9:130438923 3'AG 130438923 Downstream 7bp
chr10 7773949 7773949 1 + C T COAD 7773947 + 7773927 7773967 41 GATCAAATAGAGAGCGTTATCACGGCGACTTCGGTACTTCC GATCAAATAGAGAGCGTTATCATGGCGACTTCGGTACTTCC < 41bp 0.793514104106994 0.549602834926448 0.93684566 0.91296685 prediction 0.487822538361092 Functional Loss - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7773947 chr10:7773949 nonsynonymous SNV 0.116 2 23 hm5C_associated_SNPs_67517 0 0 1 0 1 ITIH2 chr10:7773959 5'GT 7773959 Upstream 11bp
chr8 19811727 19811727 1 + C T SKCM 19811725 + 19811705 19811745 41 GTAGACGTCTTACACACATTCACCAGAGGGTCCCCTGGTCG GTAGACGTCTTACACACATTCATCAGAGGGTCCCCTGGTCG < 41bp 0.844931993942012 0.601021244208306 0.03237179 0.111474216 prediction 0.487821499467412 Functional Loss - LPL ENSG00000175445 CDS Human protein_coding chr8:19811725 chr8:19811727 nonsynonymous SNV 0.958 5 23 hm5C_associated_SNPs_67518 0 0 0 0 1 LPL chr8:19811631 3'AG 19811631 Downstream 97bp
chr19 42383185 42383185 1 + G A LUSC 42383182 + 42383162 42383202 41 ACGCCAACGTCACCTGGTGGCGCGTCCTCCATGGCAACTAC ACGCCAACGTCACCTGGTGGCGCATCCTCCATGGCAACTAC < 41bp 0.744160073381069 0.500250090773406 0.32441974 0.18626565 prediction 0.487819965215327 Functional Loss - CD79A ENSG00000105369 CDS Human protein_coding chr19:42383182 chr19:42383185 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_67519 0 0 0 0 1 CD79A chr19:42383245 5'GT 42383245 Upstream 61bp
chr7 108212208 108212208 1 + G T LUSC 108212206 + 108212186 108212226 41 TCAATTTTCATCTTTGCAATCTGCATTTTAATGATAACAGA TCAATTTTCATCTTTGCAATCTTCATTTTAATGATAACAGA < 41bp 0.743908340547461 0.434472395929587 0.1622577 0.24654096 prediction 0.487816681094922 Functional Loss - DNAJB9 ENSG00000128590 CDS Human protein_coding chr7:108212206 chr7:108212208 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_67520 0 0 1 0 1 DNAJB9 chr7:108212161 3'AG 108212161 Downstream 48bp
chr13 24465654 24465654 1 + G T LUAD 24465651 + 24465631 24465671 41 CCAAAGACACCTGAACATTCCTGGAGAAAACAGTGATGTGG CCAAAGACACCTGAACATTCCTGTAGAAAACAGTGATGTGG < 41bp 0.790668251383085 0.546763389797645 0.27901065 0.117143005 prediction 0.48780972317088 Functional Loss - C1QTNF9B ENSG00000205863 CDS Human protein_coding chr13:24465651 chr13:24465654 nonsynonymous SNV 0.981 3 24 hm5C_associated_SNPs_67523 0 0 0 0 1 C1QTNF9B;PCOTH chr13:24465670 5'GT 24465670 Upstream 17bp
chr10 54074811 54074811 1 + C T COAD 54074809 + 54074789 54074829 41 GCCGAAAACGCTGCATGCGTCACGCTATGTGCTGCCCCGGG GCCGAAAACGCTGCATGCGTCATGCTATGTGCTGCCCCGGG < 41bp 0.743899916879791 0.484266160472074 0.2656945 0.33855912 prediction 0.487799833759582 Functional Loss - DKK1 ENSG00000107984 CDS Human protein_coding chr10:54074809 chr10:54074811 synonymous SNV . 0 23 hm5C_associated_SNPs_67524 0 0 1 0 1 DKK1 chr10:54074845 5'GT 54074845 Upstream 35bp
chr11 63987987 63987987 1 + G T PAAD 63987985 + 63987965 63988005 41 ATGGCCGACAGCAGCTACACCAGCGAGGTGCAGGCCATCCT ATGGCCGACAGCAGCTACACCATCGAGGTGCAGGCCATCCT < 41bp 0.743891131607549 0.393687651521291 0.50728863 0.31530756 prediction 0.487782263215097 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63987985 chr11:63987987 nonsynonymous SNV 0.780 1 23 hm5C_associated_SNPs_67528 0 0 0 0 1 FERMT3 chr11:63987908 3'AG 63987908 Downstream 80bp
chr3 132441198 132441198 1 + A T LUSC 132441194 + 132441174 132441214 41 CTCACGAGCGACGAGGCGGTCCCCATGGCGTCCGTTGCCGC CTCACGAGCGACGAGGCGGTCCCCTTGGCGTCCGTTGCCGC < 41bp 0.743883320374539 0.425862104035885 0.26361808 0.16505918 prediction 0.487766640749078 Functional Loss - NPHP3 ENSG00000113971 CDS Human antisense chr3:132441194 chr3:132441198 nonsynonymous SNV 0.087 5 25 hm5C_associated_SNPs_67533 0 0 0 0 1 NPHP3-ACAD11;NPHP3-AS1 chr3:132441223 5'GT 132441223 Upstream 26bp
chrX 37553608 37553608 1 + G T UCEC 37553605 + 37553585 37553625 41 GAGCCTTATGTCAGTATCACCAAGAAGAGGCAAATGCCAAA GAGCCTTATGTCAGTATCACCAATAAGAGGCAAATGCCAAA < 41bp 0.743882424886983 0.364337241520782 0.60810065 0.103414565 prediction 0.487764849773965 Functional Loss - XK ENSG00000047597 CDS Human protein_coding chrX:37553605 chrX:37553608 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_67534 0 0 1 0 1 XK chrX:37553539 3'AG 37553539 Downstream 70bp
chr7 141755884 141755884 1 + A C HNSC 141755883 + 141755863 141755903 41 CATGGAGTGCTCCTGCTGAACAGCAATGCCATGGGTAAGGC CATGGAGTGCTCCTGCTGAACCGCAATGCCATGGGTAAGGC < 41bp 0.771739095397411 0.527859156980467 0.059482187 0.068597704 prediction 0.487759876833888 Functional Loss - MGAM ENSG00000257335 CDS Human protein_coding chr7:141755883 chr7:141755884 nonsynonymous SNV 0.996 5 22 hm5C_associated_SNPs_67535 0 0 0 0 2 MGAM chr7:141755800 3'AG 141755800 Downstream 85bp
chr7 141755884 141755884 1 + A C HNSC 141755883 + 141755863 141755903 41 CATGGAGTGCTCCTGCTGAACAGCAATGCCATGGGTAAGGC CATGGAGTGCTCCTGCTGAACCGCAATGCCATGGGTAAGGC < 41bp 0.771739095397411 0.527859156980467 0.059482187 0.068597704 prediction 0.487759876833888 Functional Loss - MGAM ENSG00000257335 CDS Human protein_coding chr7:141755883 chr7:141755884 nonsynonymous SNV 0.996 5 22 hm5C_associated_SNPs_67535 0 0 0 0 2 MGAM chr7:141755896 5'GT 141755896 Upstream 13bp
chr17 12883400 12883400 1 + C T SKCM 12883398 + 12883378 12883418 41 AACAAAAAGCAAGGAACTTTCTCCAGGCTCTGCACAGAAAG AACAAAAAGCAAGGAACTTTCTTCAGGCTCTGCACAGAAAG < 41bp 0.743876180523225 0.447957402843608 0.9395899 0.09064701 prediction 0.48775236104645 Functional Loss - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12883398 chr17:12883400 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_67537 0 0 1 0 1 ARHGAP44 chr17:12883375 3'AG 12883375 Downstream 26bp
chr2 220371144 220371144 1 + G T LUAD 220371141 + 220371121 220371161 41 TGCTGCCTGCTATCACCATCCTGGGTATGGCTTCCTGGGGG TGCTGCCTGCTATCACCATCCTGTGTATGGCTTCCTGGGGG < 41bp 0.918006021082272 0.67413426985006 0.72189033 0.12039116 prediction 0.487743502464424 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220371141 chr2:220371144 nonsynonymous SNV 0.980 4 24 hm5C_associated_SNPs_67538 0 0 1 0 1 GMPPA chr2:220371144 5'GT 220371144 Upstream 1bp
chr8 22969277 22969277 1 + C T SKCM 22969275 + 22969255 22969295 41 CTGCCCGGCAGGAGGAAGTTCCCCAGCAGACAGTGGCCCCA CTGCCCGGCAGGAGGAAGTTCCTCAGCAGACAGTGGCCCCA < 41bp 0.794086124036524 0.550216555133313 0.2984519 0.24220705 prediction 0.487739137806422 Functional Loss - TNFRSF10C ENSG00000173535 CDS Human protein_coding chr8:22969275 chr8:22969277 synonymous SNV . 0 23 hm5C_associated_SNPs_67540 0 0 0 0 2 TNFRSF10C chr8:22969233 3'AG 22969233 Downstream 45bp
chr8 22969277 22969277 1 + C T SKCM 22969275 + 22969255 22969295 41 CTGCCCGGCAGGAGGAAGTTCCCCAGCAGACAGTGGCCCCA CTGCCCGGCAGGAGGAAGTTCCTCAGCAGACAGTGGCCCCA < 41bp 0.794086124036524 0.550216555133313 0.2984519 0.24220705 prediction 0.487739137806422 Functional Loss - TNFRSF10C ENSG00000173535 CDS Human protein_coding chr8:22969275 chr8:22969277 synonymous SNV . 0 23 hm5C_associated_SNPs_67540 0 0 0 0 2 TNFRSF10C chr8:22969338 5'GT 22969338 Upstream 62bp
chr19 4307950 4307950 1 + G T LUAD 4307948 + 4307928 4307968 41 TGGAGACAGCCAACCAGACTCTGCAGGCCATGGACAGCGAG TGGAGACAGCCAACCAGACTCTTCAGGCCATGGACAGCGAG < 41bp 0.882739463009002 0.638870823030904 0.3154742 0.1420626 prediction 0.487737279956197 Functional Loss - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4307948 chr19:4307950 synonymous SNV . 0 23 hm5C_associated_SNPs_67541 0 0 0 0 2 FSD1 chr19:4307879 3'AG 4307879 Downstream 72bp
chr19 4307950 4307950 1 + G T LUAD 4307948 + 4307928 4307968 41 TGGAGACAGCCAACCAGACTCTGCAGGCCATGGACAGCGAG TGGAGACAGCCAACCAGACTCTTCAGGCCATGGACAGCGAG < 41bp 0.882739463009002 0.638870823030904 0.3154742 0.1420626 prediction 0.487737279956197 Functional Loss - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4307948 chr19:4307950 synonymous SNV . 0 23 hm5C_associated_SNPs_67541 0 0 0 0 2 FSD1 chr19:4307980 5'GT 4307980 Upstream 31bp
chr11 65480965 65480965 1 + C T LUSC 65480963 + 65480943 65480983 41 GCTCCTGCCTGCAGCCCAACCACCGCTCAACGGTACCCTCA GCTCCTGCCTGCAGCCCAACCATCGCTCAACGGTACCCTCA < 41bp 0.743867176759336 0.485458503455045 0.08374524 0.09759125 prediction 0.487734353518671 Functional Loss - KAT5 ENSG00000172977 CDS Human protein_coding chr11:65480963 chr11:65480965 synonymous SNV . 0 23 hm5C_associated_SNPs_67542 0 0 0 0 1 KAT5 chr11:65480974 5'GT 65480974 Upstream 10bp
chr2 113322044 113322044 1 + C T PAAD 113322042 + 113322022 113322062 41 CTGGGTGGATAAGGATCTTGCTCCAGGCATCGCAGATTCTC CTGGGTGGATAAGGATCTTGCTTCAGGCATCGCAGATTCTC < 41bp 0.841218798643026 0.597351757419473 0.8534551 0.15514904 prediction 0.487734082447106 Functional Loss - POLR1B ENSG00000125630 CDS Human protein_coding chr2:113322042 chr2:113322044 nonsynonymous SNV 0.113 1 23 hm5C_associated_SNPs_67543 0 0 1 0 1 POLR1B chr2:113322076 5'GT 113322076 Upstream 33bp
chr19 13885348 13885348 1 + A C rs80019370 13885347 + 13885327 13885367 41 ACCCGCAAAGAGTAAGACGGCAGCGGCAGCCTCTGAAAAGA ACCCGCAAAGAGTAAGACGGCCGCGGCAGCCTCTGAAAAGA < 41bp 0.781861253631971 0.538000835299025 0.65763664 0.36551315 prediction 0.487720836665893 Functional Loss - C19orf53 ENSG00000104979 CDS Human protein_coding chr19:13885347 chr19:13885348 nonsynonymous SNV 0.032 0 22 hm5C_associated_SNPs_67545 0 0 1 0 1 C19orf53 chr19:13885388 5'GT 13885388 Upstream 41bp
chr17 41006617 41006617 1 + C T SKCM 41006615 + 41006595 41006635 41 CCTCGTGGGAAGCGCCACCCCTCGCTACCTGTACCTGGCCA CCTCGTGGGAAGCGCCACCCCTTGCTACCTGTACCTGGCCA < 41bp 0.814295323418526 0.570442923132193 0.28726688 0.01637873 prediction 0.487704800572665 Functional Loss - AOC3 ENSG00000131471 CDS Human protein_coding chr17:41006615 chr17:41006617 nonsynonymous SNV 0.021 3 23 hm5C_associated_SNPs_67547 0 0 1 0 1 AOC3 chr17:41006554 3'AG 41006554 Downstream 64bp
chr20 53227029 53227029 1 + C T UCEC 53227027 + 53227007 53227047 41 CCTTGGCCATAGCCGAGCAGCACGAGCGCTTGCTACAGAGT CCTTGGCCATAGCCGAGCAGCATGAGCGCTTGCTACAGAGT < 41bp 0.743852158413275 0.460413359831297 0.25073075 0.15225753 prediction 0.487704316826551 Functional Loss - DOK5 ENSG00000101134 CDS Human protein_coding chr20:53227027 chr20:53227029 synonymous SNV . 0 23 hm5C_associated_SNPs_67548 0 0 0 0 1 DOK5 chr20:53227062 5'GT 53227062 Upstream 34bp
chr4 84457286 84457286 1 + G C rs116785791 84457282 + 84457262 84457302 41 GCTTCCAGCACAGCCCGCGGCCCGGTGCCAGCTCCGCCGGC GCTTCCAGCACAGCCCGCGGCCCGCTGCCAGCTCCGCCGGC < 41bp 0.821109044769439 0.577265476219801 0.39469492 0.15099856 prediction 0.487687137099275 Functional Loss - GPAT3 ENSG00000138678 UTR5 Human protein_coding chr4:84457282 chr4:84457286 . . 0 25 hm5C_associated_SNPs_67550 0 0 0 0 1 GPAT3 chr4:84457359 5'GT 84457359 Upstream 74bp
chr1 68152173 68152173 1 + G A SARC 68152170 + 68152150 68152190 41 CATCCTGCGCGTCAGCAACCCGGGCCGGCTGGCGGAGCTCC CATCCTGCGCGTCAGCAACCCGGACCGGCTGGCGGAGCTCC < 41bp 0.748427594108576 0.504590050776645 0.61811507 0.16443211 prediction 0.487675086663862 Functional Loss - GADD45A ENSG00000116717 CDS Human protein_coding chr1:68152170 chr1:68152173 nonsynonymous SNV 0.972 1 24 hm5C_associated_SNPs_67551 0 0 1 0 1 GADD45A chr1:68152270 5'GT 68152270 Upstream 98bp
chr4 25676011 25676011 1 + C T UCEC 25676009 + 25675989 25676029 41 GTACAGAGCAGCTCTGTGTTCACGTCGGCCTTGACCCCCCT GTACAGAGCAGCTCTGTGTTCATGTCGGCCTTGACCCCCCT < 41bp 0.811923892719143 0.56808647042548 0.109360635 0.10369733 prediction 0.487674844587325 Functional Loss - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25676009 chr4:25676011 nonsynonymous SNV 0.606 5 23 hm5C_associated_SNPs_67552 0 0 0 0 2 SLC34A2 chr4:25675918 3'AG 25675918 Downstream 94bp
chr4 25676011 25676011 1 + C T UCEC 25676009 + 25675989 25676029 41 GTACAGAGCAGCTCTGTGTTCACGTCGGCCTTGACCCCCCT GTACAGAGCAGCTCTGTGTTCATGTCGGCCTTGACCCCCCT < 41bp 0.811923892719143 0.56808647042548 0.109360635 0.10369733 prediction 0.487674844587325 Functional Loss - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25676009 chr4:25676011 nonsynonymous SNV 0.606 5 23 hm5C_associated_SNPs_67552 0 0 0 0 2 SLC34A2 chr4:25676034 5'GT 25676034 Upstream 24bp
chr19 34685433 34685433 1 + C T UCEC 34685431 + 34685411 34685451 41 GACAGATCGTCCAATACCACCTCGAGATGAAGTCTTTGAAT GACAGATCGTCCAATACCACCTTGAGATGAAGTCTTTGAAT < 41bp 0.743835226856245 0.467844737761078 0.64670825 0.105870456 prediction 0.487670453712489 Functional Loss - LSM14A ENSG00000257103 CDS Human protein_coding chr19:34685431 chr19:34685433 stopgain 1.000 1 23 hm5C_associated_SNPs_67553 0 0 1 0 1 LSM14A chr19:34685383 3'AG 34685383 Downstream 51bp
chr16 19775391 19775391 1 + G T UCEC 19775389 + 19775369 19775409 41 GAGGGCAGGGGAGCCATTCACAGAATTTTTCTCCATTCCAT GAGGGCAGGGGAGCCATTCACATAATTTTTCTCCATTCCAT < 41bp 0.889299517520519 0.645464453212547 0.4547543 0.17673796 prediction 0.487670128615944 Functional Loss - IQCK ENSG00000174628 CDS Human protein_coding chr16:19775389 chr16:19775391 stopgain 1.000 0 23 hm5C_associated_SNPs_67554 0 0 0 0 2 IQCK chr16:19775357 3'AG 19775357 Downstream 35bp
chr16 19775391 19775391 1 + G T UCEC 19775389 + 19775369 19775409 41 GAGGGCAGGGGAGCCATTCACAGAATTTTTCTCCATTCCAT GAGGGCAGGGGAGCCATTCACATAATTTTTCTCCATTCCAT < 41bp 0.889299517520519 0.645464453212547 0.4547543 0.17673796 prediction 0.487670128615944 Functional Loss - IQCK ENSG00000174628 CDS Human protein_coding chr16:19775389 chr16:19775391 stopgain 1.000 0 23 hm5C_associated_SNPs_67554 0 0 0 0 2 IQCK chr16:19775434 5'GT 19775434 Upstream 44bp
chr14 99959163 99959163 1 + G C CESC 99959162 + 99959142 99959182 41 CAGCCACCGAGGCCCGGTACCGCCGAGAGGGCGCTCGGTTC CAGCCACCGAGGCCCGGTACCCCCGAGAGGGCGCTCGGTTC < 41bp 0.862856077706336 0.61903120489636 0.33272374 0.07698274 prediction 0.487649745619953 Functional Loss - CCNK ENSG00000090061 CDS Human protein_coding chr14:99959162 chr14:99959163 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_67555 0 0 1 0 1 CCNK chr14:99959211 5'GT 99959211 Upstream 49bp
chr19 13875456 13875456 1 + G T LUSC 13875454 + 13875434 13875474 41 GCTCCCTGCAGATCCTAGACCAGCTGCTGCTGCCCAAGCAG GCTCCCTGCAGATCCTAGACCATCTGCTGCTGCCCAAGCAG < 41bp 0.743824402415782 0.39295806367025 0.938684 0.2548123 prediction 0.487648804831564 Functional Loss - MRI1 ENSG00000037757 CDS Human protein_coding chr19:13875454 chr19:13875456 nonsynonymous SNV 0.916 4 23 hm5C_associated_SNPs_67556 0 0 1 0 1 MRI1 chr19:13875534 5'GT 13875534 Upstream 79bp
chr16 31499738 31499738 1 + G T LUAD 31499735 + 31499715 31499755 41 TGCGTGGTGCCTGAGGTGTGCAGGCGCGTGTGCGGCACGGA TGCGTGGTGCCTGAGGTGTGCAGTCGCGTGTGCGGCACGGA < 41bp 0.743817825492162 0.335164755418946 0.86250794 0.41961333 prediction 0.487635650984324 Functional Loss - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31499735 chr16:31499738 nonsynonymous SNV 0.570 1 24 hm5C_associated_SNPs_67558 0 0 0 0 2 SLC5A2 chr16:31499704 3'AG 31499704 Downstream 35bp
chr16 31499738 31499738 1 + G T LUAD 31499735 + 31499715 31499755 41 TGCGTGGTGCCTGAGGTGTGCAGGCGCGTGTGCGGCACGGA TGCGTGGTGCCTGAGGTGTGCAGTCGCGTGTGCGGCACGGA < 41bp 0.743817825492162 0.335164755418946 0.86250794 0.41961333 prediction 0.487635650984324 Functional Loss - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31499735 chr16:31499738 nonsynonymous SNV 0.570 1 24 hm5C_associated_SNPs_67558 0 0 0 0 2 SLC5A2 chr16:31499811 5'GT 31499811 Upstream 74bp
chrX 70787860 70787860 1 + C T CESC 70787858 + 70787838 70787878 41 TACAGGAGAGACTCTTGCTTCTCGAGTTGCAGCATCCCAGC TACAGGAGAGACTCTTGCTTCTTGAGTTGCAGCATCCCAGC < 41bp 0.842472088920661 0.598656858254196 0.42044607 0.042794734 prediction 0.487630461332931 Functional Loss - OGT ENSG00000147162 CDS Human protein_coding chrX:70787858 chrX:70787860 stopgain 1.000 1 23 hm5C_associated_SNPs_67559 0 0 1 0 1 OGT chrX:70787843 3'AG 70787843 Downstream 18bp
chr20 36962846 36962846 1 + G T LUSC 36962844 + 36962824 36962864 41 ATTTCCAGGTTGAATTGCTGCAGGATATCATGAACTACATT ATTTCCAGGTTGAATTGCTGCATGATATCATGAACTACATT < 41bp 0.743812669993709 0.401612240329734 0.5825793 0.090869844 prediction 0.487625339987418 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36962844 chr20:36962846 nonsynonymous SNV 0.003 3 23 hm5C_associated_SNPs_67561 0 0 0 0 2 BPI chr20:36962832 3'AG 36962832 Downstream 15bp
chr20 36962846 36962846 1 + G T LUSC 36962844 + 36962824 36962864 41 ATTTCCAGGTTGAATTGCTGCAGGATATCATGAACTACATT ATTTCCAGGTTGAATTGCTGCATGATATCATGAACTACATT < 41bp 0.743812669993709 0.401612240329734 0.5825793 0.090869844 prediction 0.487625339987418 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36962844 chr20:36962846 nonsynonymous SNV 0.003 3 23 hm5C_associated_SNPs_67561 0 0 0 0 2 BPI chr20:36962895 5'GT 36962895 Upstream 50bp
chr5 52206177 52206177 1 + G T LUAD 52206175 + 52206155 52206195 41 ACATCGTGATAGGAGCTCCGCTGGAAGATGATCACGGGGGA ACATCGTGATAGGAGCTCCGCTTGAAGATGATCACGGGGGA < 41bp 0.743809442319344 0.409582359723603 0.13396445 0.044029266 prediction 0.487618884638687 Functional Loss - ITGA1 ENSG00000213949 CDS Human protein_coding chr5:52206175 chr5:52206177 synonymous SNV . 0 23 hm5C_associated_SNPs_67562 0 0 0 0 1 ITGA1 chr5:52206249 5'GT 52206249 Upstream 73bp
chrX 101823473 101823473 1 + G T UCEC 101823470 + 101823450 101823490 41 CTACCCTCTCCCAGAAGCAGCAGGAAATGGTGGAGACTGTC CTACCCTCTCCCAGAAGCAGCAGTAAATGGTGGAGACTGTC < 41bp 0.743809083739628 0.350995725471775 0.40357378 0.3003869 prediction 0.487618167479255 Functional Loss - NXF4 ENSG00000196970 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:101823470 chrX:101823473 . . 0 24 hm5C_associated_SNPs_67563 0 0 0 1 1 NXF4 chrX:101823528 5'GT 101823528 Upstream 56bp
chr12 108086637 108086637 1 + G T LUAD 108086634 + 108086614 108086654 41 CTCTTGGGTCTTACGGTCTACGGGAGTAATGATCAAGATCC CTCTTGGGTCTTACGGTCTACGGTAGTAATGATCAAGATCC < 41bp 0.914281028415952 0.670472886026662 0.7467532 0.18208542 prediction 0.48761628477858 Functional Loss - PWP1 ENSG00000136045 CDS Human protein_coding chr12:108086634 chr12:108086637 synonymous SNV . 0 24 hm5C_associated_SNPs_67564 0 0 1 0 2 PWP1 chr12:108086591 3'AG 108086591 Downstream 47bp
chr12 108086637 108086637 1 + G T LUAD 108086634 + 108086614 108086654 41 CTCTTGGGTCTTACGGTCTACGGGAGTAATGATCAAGATCC CTCTTGGGTCTTACGGTCTACGGTAGTAATGATCAAGATCC < 41bp 0.914281028415952 0.670472886026662 0.7467532 0.18208542 prediction 0.48761628477858 Functional Loss - PWP1 ENSG00000136045 CDS Human protein_coding chr12:108086634 chr12:108086637 synonymous SNV . 0 24 hm5C_associated_SNPs_67564 0 0 1 0 2 PWP1 chr12:108086676 5'GT 108086676 Upstream 40bp
chr14 105398383 105398383 1 + G T LUSC 105398381 + 105398361 105398401 41 GCTGGACAACGCGCTGCGGGCGGCAGCCTTCGGCAAGGGCG GCTGGACAACGCGCTGCGGGCGTCAGCCTTCGGCAAGGGCG < 41bp 0.895564292614941 0.651757642405265 0.613858 0.080602944 prediction 0.487613300419351 Functional Loss - PLD4 ENSG00000166428 CDS Human protein_coding chr14:105398381 chr14:105398383 nonsynonymous SNV 0.051 4 23 hm5C_associated_SNPs_67565 0 0 0 0 1 PLD4 chr14:105398349 3'AG 105398349 Downstream 35bp
chr9 113510005 113510005 1 + T C LUAD 113510004 + 113509984 113510024 41 TTTATCACCAAGCCAGGACTCTACACATGCATAGCTACCAA TTTATCACCAAGCCAGGACTCCACACATGCATAGCTACCAA < 41bp 0.743804356815761 0.4806902946849 0.50794655 0.089818895 prediction 0.487608713631523 Functional Loss - MUSK ENSG00000030304 CDS Human protein_coding chr9:113510004 chr9:113510005 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_67566 0 0 0 0 2 MUSK chr9:113509921 3'AG 113509921 Downstream 85bp
chr9 113510005 113510005 1 + T C LUAD 113510004 + 113509984 113510024 41 TTTATCACCAAGCCAGGACTCTACACATGCATAGCTACCAA TTTATCACCAAGCCAGGACTCCACACATGCATAGCTACCAA < 41bp 0.743804356815761 0.4806902946849 0.50794655 0.089818895 prediction 0.487608713631523 Functional Loss - MUSK ENSG00000030304 CDS Human protein_coding chr9:113510004 chr9:113510005 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_67566 0 0 0 0 2 MUSK chr9:113510079 5'GT 113510079 Upstream 75bp
chr16 1412297 1412297 1 + G A rs190614894 1412294 + 1412274 1412314 41 CGCTGACGTTCGAGACCCCCCTCGTCTGCCACCCCCACGCC CGCTGACGTTCGAGACCCCCCTCATCTGCCACCCCCACGCC < 41bp 0.743802011595513 0.494498497059029 0.11931753 0.12694281 prediction 0.487604023191026 Functional Loss - GNPTG ENSG00000090581 CDS Human protein_coding chr16:1412294 chr16:1412297 nonsynonymous SNV 0.712 4 24 hm5C_associated_SNPs_67567 1 0 0 0 2 GNPTG chr16:1412207 3'AG 1412207 Downstream 91bp
chr16 1412297 1412297 1 + G A rs190614894 1412294 + 1412274 1412314 41 CGCTGACGTTCGAGACCCCCCTCGTCTGCCACCCCCACGCC CGCTGACGTTCGAGACCCCCCTCATCTGCCACCCCCACGCC < 41bp 0.743802011595513 0.494498497059029 0.11931753 0.12694281 prediction 0.487604023191026 Functional Loss - GNPTG ENSG00000090581 CDS Human protein_coding chr16:1412294 chr16:1412297 nonsynonymous SNV 0.712 4 24 hm5C_associated_SNPs_67567 1 0 0 0 2 GNPTG chr16:1412321 5'GT 1412321 Upstream 25bp
chr16 1412296 1412296 1 + C T CESC 1412294 + 1412274 1412314 41 CGCTGACGTTCGAGACCCCCCTCGTCTGCCACCCCCACGCC CGCTGACGTTCGAGACCCCCCTTGTCTGCCACCCCCACGCC < 41bp 0.743802011595513 0.481343099682564 0.11931753 0.10321599 prediction 0.487604023191026 Functional Loss - GNPTG ENSG00000090581 CDS Human protein_coding chr16:1412294 chr16:1412296 synonymous SNV . 0 23 hm5C_associated_SNPs_67568 0 0 0 0 2 GNPTG chr16:1412207 3'AG 1412207 Downstream 90bp
chr16 1412296 1412296 1 + C T CESC 1412294 + 1412274 1412314 41 CGCTGACGTTCGAGACCCCCCTCGTCTGCCACCCCCACGCC CGCTGACGTTCGAGACCCCCCTTGTCTGCCACCCCCACGCC < 41bp 0.743802011595513 0.481343099682564 0.11931753 0.10321599 prediction 0.487604023191026 Functional Loss - GNPTG ENSG00000090581 CDS Human protein_coding chr16:1412294 chr16:1412296 synonymous SNV . 0 23 hm5C_associated_SNPs_67568 0 0 0 0 2 GNPTG chr16:1412321 5'GT 1412321 Upstream 26bp
chr12 56549214 56549214 1 + C T STAD 56549212 + 56549192 56549232 41 CCAACCTCCAGAGCTGAAGTCGCGGCGTGTGGACTTTGAGA CCAACCTCCAGAGCTGAAGTCGTGGCGTGTGGACTTTGAGA < 41bp 0.743799600940734 0.489986046648344 0.9289354 0.8998106 prediction 0.487599201881468 Functional Loss - MYL6B ENSG00000196465 CDS Human protein_coding chr12:56549212 chr12:56549214 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_67569 0 0 1 0 1 MYL6B chr12:56549203 3'AG 56549203 Downstream 12bp
chr7 6631414 6631414 1 + G T rs10260097 6631411 + 6631391 6631431 41 GGGAACAAAGCCGATGACAGCCGGATGAGCTTGTTGGGAAA GGGAACAAAGCCGATGACAGCCGTATGAGCTTGTTGGGAAA < 41bp 0.743799140960698 0.35154953336955 0.48261514 0.256718 prediction 0.487598281921396 Functional Loss - C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631411 chr7:6631414 synonymous SNV . 0 24 hm5C_associated_SNPs_67570 0 0 1 0 2 C7orf26 chr7:6631334 3'AG 6631334 Downstream 81bp
chr7 6631414 6631414 1 + G T rs10260097 6631411 + 6631391 6631431 41 GGGAACAAAGCCGATGACAGCCGGATGAGCTTGTTGGGAAA GGGAACAAAGCCGATGACAGCCGTATGAGCTTGTTGGGAAA < 41bp 0.743799140960698 0.35154953336955 0.48261514 0.256718 prediction 0.487598281921396 Functional Loss - C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631411 chr7:6631414 synonymous SNV . 0 24 hm5C_associated_SNPs_67570 0 0 1 0 2 C7orf26 chr7:6631498 5'GT 6631498 Upstream 85bp
chr19 7593528 7593528 1 + C T COAD 7593526 + 7593506 7593546 41 TTTGACGTGGTGGTCATCCTCACCTGCTCCCTGTCCTTCCT TTTGACGTGGTGGTCATCCTCATCTGCTCCCTGTCCTTCCT < 41bp 0.802230014132634 0.558433962614195 0.26447707 0.147618 prediction 0.487592103036877 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7593526 chr19:7593528 nonsynonymous SNV 0.871 0 23 hm5C_associated_SNPs_67573 0 0 0 0 2 MCOLN1 chr19:7593483 3'AG 7593483 Downstream 46bp
chr19 7593528 7593528 1 + C T COAD 7593526 + 7593506 7593546 41 TTTGACGTGGTGGTCATCCTCACCTGCTCCCTGTCCTTCCT TTTGACGTGGTGGTCATCCTCATCTGCTCCCTGTCCTTCCT < 41bp 0.802230014132634 0.558433962614195 0.26447707 0.147618 prediction 0.487592103036877 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7593526 chr19:7593528 nonsynonymous SNV 0.871 0 23 hm5C_associated_SNPs_67573 0 0 0 0 2 MCOLN1 chr19:7593589 5'GT 7593589 Upstream 62bp
chr3 189590699 189590699 1 + G T UCEC 189590696 + 189590676 189590716 41 TGTTGAAGATCAAAGAGTCCCTGGAACTCATGCAGTACCTT TGTTGAAGATCAAAGAGTCCCTGTAACTCATGCAGTACCTT < 41bp 0.743795974438066 0.375641940128814 0.1999413 0.11925566 prediction 0.487591948876133 Functional Loss - TP63 ENSG00000073282 CDS Human protein_coding chr3:189590696 chr3:189590699 stopgain 1.000 1 24 hm5C_associated_SNPs_67574 0 0 0 0 2 TP63 chr3:189590648 3'AG 189590648 Downstream 52bp
chr3 189590699 189590699 1 + G T UCEC 189590696 + 189590676 189590716 41 TGTTGAAGATCAAAGAGTCCCTGGAACTCATGCAGTACCTT TGTTGAAGATCAAAGAGTCCCTGTAACTCATGCAGTACCTT < 41bp 0.743795974438066 0.375641940128814 0.1999413 0.11925566 prediction 0.487591948876133 Functional Loss - TP63 ENSG00000073282 CDS Human protein_coding chr3:189590696 chr3:189590699 stopgain 1.000 1 24 hm5C_associated_SNPs_67574 0 0 0 0 2 TP63 chr3:189590784 5'GT 189590784 Upstream 86bp
chr16 1556998 1556998 1 + C T BLCA 1556996 + 1556976 1557016 41 TGGGAGAAGACCAGCTGGTTCTCGGAAGGCTGGCGCACACC TGGGAGAAGACCAGCTGGTTCTTGGAAGGCTGGCGCACACC < 41bp 0.743794018102306 0.473484632283052 0.9064871 0.8194271 prediction 0.487588036204613 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1556996 chr16:1556998 synonymous SNV . 0 23 hm5C_associated_SNPs_67575 0 0 1 0 2 TELO2 chr16:1556953 3'AG 1556953 Downstream 46bp
chr16 1556998 1556998 1 + C T BLCA 1556996 + 1556976 1557016 41 TGGGAGAAGACCAGCTGGTTCTCGGAAGGCTGGCGCACACC TGGGAGAAGACCAGCTGGTTCTTGGAAGGCTGGCGCACACC < 41bp 0.743794018102306 0.473484632283052 0.9064871 0.8194271 prediction 0.487588036204613 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1556996 chr16:1556998 synonymous SNV . 0 23 hm5C_associated_SNPs_67575 0 0 1 0 2 TELO2 chr16:1557052 5'GT 1557052 Upstream 55bp
chr6 90312802 90312802 1 - G A COAD 90312804 - 90312784 90312824 41 CACCCTTCGTGGATGAGCGCCGCGATGATCTCCGTGTTCCC CACCCTTCGTGGATGAGCGCCGTGATGATCTCCGTGTTCCC < 41bp 0.743792866349218 0.490055483828205 0.22814775 0.24708691 prediction 0.487585732698435 Functional Loss - ANKRD6 ENSG00000135299 CDS Human protein_coding chr6:90312804 chr6:90312802 nonsynonymous SNV 0.006 0 23 hm5C_associated_SNPs_67576 0 0 0 0 1 ANKRD6 chr6:90312828 3'AG 90312828 Downstream 27bp
chr22 43520054 43520054 1 + G T OV 43520051 + 43520031 43520071 41 GTCTGAAGTAAGACCCCTCTCCAGAGACATCTTGATGGAGA GTCTGAAGTAAGACCCCTCTCCATAGACATCTTGATGGAGA < 41bp 0.743785253091775 0.371833096905276 0.9113624 0.1632404 prediction 0.487570506183551 Functional Loss - BIK ENSG00000100290 CDS Human protein_coding chr22:43520051 chr22:43520054 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_67578 0 0 0 0 1 BIK chr22:43520022 3'AG 43520022 Downstream 33bp
chr3 16327891 16327891 1 + C T SKCM 16327889 + 16327869 16327909 41 GTGTGGAGCTGCCAGTGAGTCACCGTCAGTGAAGAGCCTCC GTGTGGAGCTGCCAGTGAGTCATCGTCAGTGAAGAGCCTCC < 41bp 0.743777561241851 0.460320915947083 0.10067579 0.18038332 prediction 0.487555122483702 Functional Loss - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16327889 chr3:16327891 nonsynonymous SNV 0.017 1 23 hm5C_associated_SNPs_67580 0 0 1 0 2 OXNAD1 chr3:16327849 3'AG 16327849 Downstream 43bp
chr3 16327891 16327891 1 + C T SKCM 16327889 + 16327869 16327909 41 GTGTGGAGCTGCCAGTGAGTCACCGTCAGTGAAGAGCCTCC GTGTGGAGCTGCCAGTGAGTCATCGTCAGTGAAGAGCCTCC < 41bp 0.743777561241851 0.460320915947083 0.10067579 0.18038332 prediction 0.487555122483702 Functional Loss - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16327889 chr3:16327891 nonsynonymous SNV 0.017 1 23 hm5C_associated_SNPs_67580 0 0 1 0 2 OXNAD1 chr3:16327955 5'GT 16327955 Upstream 65bp
chr9 2646528 2646528 1 + C T BLCA 2646526 + 2646506 2646546 41 TCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGACCCACT TCTGACTTGCGAGAGCCTGCCTTCATAGCTGTGGACCCACT < 41bp 0.743773489710463 0.439390737693894 0.97621155 0.6291367 prediction 0.487546979420926 Functional Loss - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2646526 chr9:2646528 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_67582 0 0 0 0 1 VLDLR chr9:2646552 5'GT 2646552 Upstream 25bp
chr4 74719566 74719566 1 + G A LIHC 74719563 + 74719543 74719583 41 GACCACCTCCCAGGTCCGTCCCAGGCACATCACCAGCCTGG GACCACCTCCCAGGTCCGTCCCAAGCACATCACCAGCCTGG < 41bp 0.743766035098769 0.498021948073791 0.29018754 0.109844506 prediction 0.487532070197539 Functional Loss - PF4V1 ENSG00000109272 CDS Human protein_coding chr4:74719563 chr4:74719566 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_67583 0 0 0 0 2 PF4V1 chr4:74719500 3'AG 74719500 Downstream 67bp
chr4 74719566 74719566 1 + G A LIHC 74719563 + 74719543 74719583 41 GACCACCTCCCAGGTCCGTCCCAGGCACATCACCAGCCTGG GACCACCTCCCAGGTCCGTCCCAAGCACATCACCAGCCTGG < 41bp 0.743766035098769 0.498021948073791 0.29018754 0.109844506 prediction 0.487532070197539 Functional Loss - PF4V1 ENSG00000109272 CDS Human protein_coding chr4:74719563 chr4:74719566 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_67583 0 0 0 0 2 PF4V1 chr4:74719626 5'GT 74719626 Upstream 61bp
chr17 47241588 47241588 1 + T C LUAD 47241587 + 47241567 47241607 41 CTGATGACAGCCAGAAGCCCCTGGAAATTAAAGACAATCAC CTGATGACAGCCAGAAGCCCCCGGAAATTAAAGACAATCAC < 41bp 0.749815742585086 0.506049930716492 0.18649435 0.18845052 prediction 0.487531623737188 Functional Loss - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47241587 chr17:47241588 nonsynonymous SNV 0.443 1 22 hm5C_associated_SNPs_67584 0 0 0 0 1 B4GALNT2 chr17:47241637 5'GT 47241637 Upstream 50bp
chr2 182322980 182322980 1 + C T ESCA 182322978 + 182322958 182322998 41 CCAACGCTTCAGTGATCAATCCCGGGGCGATTTACAGATGC CCAACGCTTCAGTGATCAATCCTGGGGCGATTTACAGATGC < 41bp 0.799849826294792 0.556084590289575 0.93799436 0.935254 prediction 0.487530472010434 Functional Loss - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182322978 chr2:182322980 synonymous SNV . 0 23 hm5C_associated_SNPs_67585 0 0 1 0 2 ITGA4 chr2:182322923 3'AG 182322923 Downstream 58bp
chr2 182322980 182322980 1 + C T ESCA 182322978 + 182322958 182322998 41 CCAACGCTTCAGTGATCAATCCCGGGGCGATTTACAGATGC CCAACGCTTCAGTGATCAATCCTGGGGCGATTTACAGATGC < 41bp 0.799849826294792 0.556084590289575 0.93799436 0.935254 prediction 0.487530472010434 Functional Loss - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182322978 chr2:182322980 synonymous SNV . 0 23 hm5C_associated_SNPs_67585 0 0 1 0 2 ITGA4 chr2:182323044 5'GT 182323044 Upstream 65bp
chr16 20471461 20471461 1 + G A SKCM 20471458 + 20471438 20471478 41 TGCATTGGCTGCGAAAAGTTCAGGGACTTTGCACCCTGTGG TGCATTGGCTGCGAAAAGTTCAGAGACTTTGCACCCTGTGG < 41bp 0.74465332282513 0.500895243547471 0.9157429 0.8624031 prediction 0.487516158555319 Functional Loss - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20471458 chr16:20471461 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_67586 0 0 0 0 1 ACSM2A chr16:20471429 3'AG 20471429 Downstream 33bp
chr16 24886955 24886955 1 + C T UCEC 24886953 + 24886933 24886973 41 AGCTCTGGCCCTCAGGTCACCACGATGCCAGAATACCTACG AGCTCTGGCCCTCAGGTCACCATGATGCCAGAATACCTACG < 41bp 0.743753407380586 0.490550775909118 0.19275606 0.13646367 prediction 0.487506814761171 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24886953 chr16:24886955 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_67587 0 0 0 0 2 SLC5A11 chr16:24886948 3'AG 24886948 Downstream 8bp
chr16 24886955 24886955 1 + C T UCEC 24886953 + 24886933 24886973 41 AGCTCTGGCCCTCAGGTCACCACGATGCCAGAATACCTACG AGCTCTGGCCCTCAGGTCACCATGATGCCAGAATACCTACG < 41bp 0.743753407380586 0.490550775909118 0.19275606 0.13646367 prediction 0.487506814761171 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24886953 chr16:24886955 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_67587 0 0 0 0 2 SLC5A11 chr16:24887052 5'GT 24887052 Upstream 98bp
chr8 48626154 48626154 1 + C T UCEC 48626152 + 48626132 48626172 41 AGCTGCCTGGCCCGGTGATGCTCGACAGCCTGGACTCTGCA AGCTGCCTGGCCCGGTGATGCTTGACAGCCTGGACTCTGCA < 41bp 0.783893624249304 0.540151515966494 0.6817477 0.22871143 prediction 0.48748421656562 Functional Loss - SPIDR ENSG00000164808 CDS Human protein_coding chr8:48626152 chr8:48626154 synonymous SNV . 0 23 hm5C_associated_SNPs_67590 0 0 1 0 1 SPIDR chr8:48626203 5'GT 48626203 Upstream 50bp
chr1 18691730 18691730 1 + G C LUSC 18691729 + 18691709 18691749 41 AATGGCAGGTTTATTTCAAACGAGATGGGGAACCAATCGAC AATGGCAGGTTTATTTCAAACCAGATGGGGAACCAATCGAC < 41bp 0.869148529042942 0.62541046733191 0.5805946 0.48571488 prediction 0.487476123422064 Functional Loss - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18691729 chr1:18691730 nonsynonymous SNV 0.823 4 22 hm5C_associated_SNPs_67591 0 0 0 0 1 IGSF21 chr1:18691717 3'AG 18691717 Downstream 14bp
chrX 130219638 130219638 1 + G T LUAD 130219636 + 130219616 130219656 41 CACCCTGCCACAGTGATACCCTGGAGCGTCTGCTGAAGGCC CACCCTGCCACAGTGATACCCTTGAGCGTCTGCTGAAGGCC < 41bp 0.898109758513708 0.654373452479332 0.6642832 0.1421707 prediction 0.487472612068752 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130219636 chrX:130219638 synonymous SNV . 0 23 hm5C_associated_SNPs_67593 0 0 0 0 2 ARHGAP36 chrX:130219562 3'AG 130219562 Downstream 77bp
chrX 130219638 130219638 1 + G T LUAD 130219636 + 130219616 130219656 41 CACCCTGCCACAGTGATACCCTGGAGCGTCTGCTGAAGGCC CACCCTGCCACAGTGATACCCTTGAGCGTCTGCTGAAGGCC < 41bp 0.898109758513708 0.654373452479332 0.6642832 0.1421707 prediction 0.487472612068752 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130219636 chrX:130219638 synonymous SNV . 0 23 hm5C_associated_SNPs_67593 0 0 0 0 2 ARHGAP36 chrX:130219710 5'GT 130219710 Upstream 73bp
chr6 33382864 33382864 1 + C T LUAD 33382862 + 33382842 33382882 41 TGGGGCCACCCTCAGCAGTGCGCAATCAGCCCGAGCCCCAG TGGGGCCACCCTCAGCAGTGCGTAATCAGCCCGAGCCCCAG < 41bp 0.743731341981938 0.490973107727391 0.058014303 0.062734574 prediction 0.487462683963876 Functional Loss - PHF1 ENSG00000112511 CDS Human protein_coding chr6:33382862 chr6:33382864 stopgain 0.999 0 23 hm5C_associated_SNPs_67594 0 0 1 0 1 PHF1 chr6:33382921 5'GT 33382921 Upstream 58bp
chr17 19232099 19232099 1 + C T rs148952227 19232097 + 19232077 19232117 41 GTACAATCTGTCCCCAAGAACTCGGACCCCTGGGCAGCTTC GTACAATCTGTCCCCAAGAACTTGGACCCCTGGGCAGCTTC < 41bp 0.812047858798573 0.568325446522825 0.20195386 0.12094292 prediction 0.487444824551495 Functional Loss - EPN2 ENSG00000072134 CDS Human protein_coding chr17:19232097 chr17:19232099 nonsynonymous SNV 0.227 1 23 hm5C_associated_SNPs_67596 0 0 1 0 1 EPN2 chr17:19232024 3'AG 19232024 Downstream 76bp
chr17 42266848 42266848 1 + C T HNSC 42266846 + 42266826 42266866 41 CCCCTGAGATCTGAGGATAGCACCTGCCTCCCTCCCAGCCC CCCCTGAGATCTGAGGATAGCATCTGCCTCCCTCCCAGCCC < 41bp 0.74372181908168 0.499685402151613 0.04617545 0.07159549 prediction 0.48744363816336 Functional Loss - TMUB2 ENSG00000168591 CDS Human protein_coding chr17:42266846 chr17:42266848 nonsynonymous SNV 0.737 0 23 hm5C_associated_SNPs_67597 0 0 1 0 2 TMUB2 chr17:42266779 3'AG 42266779 Downstream 70bp
chr17 42266848 42266848 1 + C T HNSC 42266846 + 42266826 42266866 41 CCCCTGAGATCTGAGGATAGCACCTGCCTCCCTCCCAGCCC CCCCTGAGATCTGAGGATAGCATCTGCCTCCCTCCCAGCCC < 41bp 0.74372181908168 0.499685402151613 0.04617545 0.07159549 prediction 0.48744363816336 Functional Loss - TMUB2 ENSG00000168591 CDS Human protein_coding chr17:42266846 chr17:42266848 nonsynonymous SNV 0.737 0 23 hm5C_associated_SNPs_67597 0 0 1 0 2 TMUB2 chr17:42266792 3'AG 42266792 Downstream 57bp
chr19 41597716 41597716 1 + A C COAD 41597712 + 41597692 41597732 41 CCTTTAAGGAGCTGCAAGGGCTGGAGGACTTCATCGCCAAG CCTTTAAGGAGCTGCAAGGGCTGGCGGACTTCATCGCCAAG < 41bp 0.927640048996646 0.683927264947877 0.378274 0.43279922 prediction 0.487425568097536 Functional Loss - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41597712 chr19:41597716 nonsynonymous SNV 0.281 0 25 hm5C_associated_SNPs_67598 0 0 0 0 2 CYP2A13 chr19:41597637 3'AG 41597637 Downstream 80bp
chr19 41597716 41597716 1 + A C COAD 41597712 + 41597692 41597732 41 CCTTTAAGGAGCTGCAAGGGCTGGAGGACTTCATCGCCAAG CCTTTAAGGAGCTGCAAGGGCTGGCGGACTTCATCGCCAAG < 41bp 0.927640048996646 0.683927264947877 0.378274 0.43279922 prediction 0.487425568097536 Functional Loss - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41597712 chr19:41597716 nonsynonymous SNV 0.281 0 25 hm5C_associated_SNPs_67598 0 0 0 0 2 CYP2A13 chr19:41597813 5'GT 41597813 Upstream 98bp
chr12 121434113 121434113 1 + C T LUSC 121434111 + 121434091 121434131 41 AGTGAGACTGCAGAAGTACCCTCAAGCAGCGGCGGTCCCTT AGTGAGACTGCAGAAGTACCCTTAAGCAGCGGCGGTCCCTT < 41bp 0.827789704556559 0.584081753605324 0.055663794 0.004230112 prediction 0.487415901902471 Functional Loss - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121434111 chr12:121434113 stopgain 0.063 1 23 hm5C_associated_SNPs_67600 0 0 0 0 1 HNF1A chr12:121434065 3'AG 121434065 Downstream 49bp
chr8 23150856 23150856 1 + G A COAD 23150853 + 23150833 23150873 41 TTCAGTGGGTGGATGATACTCACGCACTCGGCATCTTTCCC TTCAGTGGGTGGATGATACTCACACACTCGGCATCTTTCCC < 41bp 0.743705638476033 0.498351096159008 0.05413875 0.038111 prediction 0.487411276952065 Functional Loss - R3HCC1 ENSG00000104679 CDS Human protein_coding chr8:23150853 chr8:23150856 nonsynonymous SNV 0.363 4 24 hm5C_associated_SNPs_67601 0 0 1 0 2 R3HCC1 chr8:23150816 3'AG 23150816 Downstream 41bp
chr8 23150856 23150856 1 + G A COAD 23150853 + 23150833 23150873 41 TTCAGTGGGTGGATGATACTCACGCACTCGGCATCTTTCCC TTCAGTGGGTGGATGATACTCACACACTCGGCATCTTTCCC < 41bp 0.743705638476033 0.498351096159008 0.05413875 0.038111 prediction 0.487411276952065 Functional Loss - R3HCC1 ENSG00000104679 CDS Human protein_coding chr8:23150853 chr8:23150856 nonsynonymous SNV 0.363 4 24 hm5C_associated_SNPs_67601 0 0 1 0 2 R3HCC1 chr8:23150886 5'GT 23150886 Upstream 31bp
chr6 24134569 24134569 1 + G T LUAD 24134567 + 24134547 24134587 41 CTGGGAAGGATGAGTTCTTGCAGCAACGTCTGTGGGTCCAG CTGGGAAGGATGAGTTCTTGCATCAACGTCTGTGGGTCCAG < 41bp 0.88976465090712 0.646065301773716 0.23183712 0.255641 prediction 0.487398698266807 Functional Loss - NRSN1 ENSG00000152954 CDS Human protein_coding chr6:24134567 chr6:24134569 nonsynonymous SNV 0.984 2 23 hm5C_associated_SNPs_67604 0 0 0 0 1 NRSN1 chr6:24134547 3'AG 24134547 Downstream 23bp
chr2 137872745 137872745 1 + C T SKCM 137872743 + 137872723 137872763 41 AATGCCAAGTCTCTCTCCTCCTCGAGCAGCAGGATCCCCAC AATGCCAAGTCTCTCTCCTCCTTGAGCAGCAGGATCCCCAC < 41bp 0.75969337599641 0.515996023321787 0.6603545 0.12978786 prediction 0.487394705349246 Functional Loss - THSD7B ENSG00000144229 CDS Human protein_coding chr2:137872743 chr2:137872745 synonymous SNV . 0 23 hm5C_associated_SNPs_67605 0 0 0 0 1 THSD7B chr2:137872694 3'AG 137872694 Downstream 52bp
chr10 106125714 106125714 1 + A C MESO 106125713 + 106125693 106125733 41 AAGCCCTGCAGCAGTATGTGCAGAAGAGCAAGGAGGAGCTT AAGCCCTGCAGCAGTATGTGCCGAAGAGCAAGGAGGAGCTT < 41bp 0.743693495701232 0.477136355041197 0.58910316 0.34688222 prediction 0.487386991402465 Functional Loss - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106125713 chr10:106125714 nonsynonymous SNV 0.512 1 22 hm5C_associated_SNPs_67606 0 0 0 0 1 CFAP58 chr10:106125766 5'GT 106125766 Upstream 53bp
chr20 61598731 61598731 1 + C T rs7271712 61598729 + 61598709 61598749 41 GGCGGCTACTTGATGGAGACCACGGGCTCCTGGACTTGCCT GGCGGCTACTTGATGGAGACCATGGGCTCCTGGACTTGCCT < 41bp 0.743686957142485 0.492908964138148 0.41569132 0.30775446 prediction 0.487373914284971 Functional Loss - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61598729 chr20:61598731 nonsynonymous SNV 0.857 2 23 hm5C_associated_SNPs_67608 0 0 1 0 1 SLC17A9 chr20:61598689 3'AG 61598689 Downstream 43bp
chr7 23286477 23286477 1 + A C OV 23286473 + 23286453 23286493 41 TGCCTGCGTCCGTGAGAATTCAGCATGGAATGTCTCTACTA TGCCTGCGTCCGTGAGAATTCAGCCTGGAATGTCTCTACTA < 41bp 0.743669914749637 0.482727295887665 0.112894386 0.10565019 prediction 0.487339829499274 Functional Loss - GPNMB ENSG00000136235 CDS Human protein_coding chr7:23286473 chr7:23286477 nonsynonymous SNV 0.707 2 25 hm5C_associated_SNPs_67613 0 0 0 0 1 GPNMB chr7:23286546 5'GT 23286546 Upstream 70bp
chr7 154738395 154738395 1 - C A UCEC 154738397 - 154738377 154738417 41 GGAAGCTCATGGAGCACAAGCAGAACTCGGTGGGTAGAGTG GGAAGCTCATGGAGCACAAGCATAACTCGGTGGGTAGAGTG < 41bp 0.743667907604998 0.40033719893335 0.4322676 0.25367063 prediction 0.487335815209996 Functional Loss - PAXIP1 ENSG00000157212 CDS Human protein_coding chr7:154738397 chr7:154738395 nonsynonymous SNV 0.932 3 23 hm5C_associated_SNPs_67614 0 0 1 0 2 PAXIP1 chr7:154738297 5'GT 154738297 Upstream 99bp
chr7 154738395 154738395 1 - C A UCEC 154738397 - 154738377 154738417 41 GGAAGCTCATGGAGCACAAGCAGAACTCGGTGGGTAGAGTG GGAAGCTCATGGAGCACAAGCATAACTCGGTGGGTAGAGTG < 41bp 0.743667907604998 0.40033719893335 0.4322676 0.25367063 prediction 0.487335815209996 Functional Loss - PAXIP1 ENSG00000157212 CDS Human protein_coding chr7:154738397 chr7:154738395 nonsynonymous SNV 0.932 3 23 hm5C_associated_SNPs_67614 0 0 1 0 2 PAXIP1 chr7:154738389 5'GT 154738389 Upstream 7bp
chr19 1526931 1526931 1 + A C rs2656858 1526927 + 1526907 1526947 41 TCTGTGGGACCCCTAACTTCCTGGACCCTGAGGTTGTCTCC TCTGTGGGACCCCTAACTTCCTGGCCCCTGAGGTTGTCTCC < 41bp 0.807290305112084 0.563627464747694 0.83079064 0.7384445 prediction 0.487325680728778 Functional Loss - PLK5 ENSG00000185988 UTR5 Human protein_coding chr19:1526927 chr19:1526931 . . 0 25 hm5C_associated_SNPs_67615 0 0 0 0 1 PLK5 chr19:1526997 5'GT 1526997 Upstream 67bp
chr2 64112782 64112782 1 + G T UCEC 64112779 + 64112759 64112799 41 AGCAAAGGACGTGTCTTACTCAGGGGAAAATACAGAAGCTT AGCAAAGGACGTGTCTTACTCAGTGGAAAATACAGAAGCTT < 41bp 0.917550484888283 0.673890794545688 0.94557106 0.8761141 prediction 0.487319380685191 Functional Loss - UGP2 ENSG00000169764 CDS Human protein_coding chr2:64112779 chr2:64112782 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_67616 0 0 1 0 1 UGP2 chr2:64112723 3'AG 64112723 Downstream 60bp
chr1 41236482 41236482 1 + C T SKCM 41236480 + 41236460 41236500 41 AGCCCTCCGACGGGCAGGCCCCCCAGGTGACCGGCGACTGA AGCCCTCCGACGGGCAGGCCCCTCAGGTGACCGGCGACTGA < 41bp 0.794783263199052 0.551125109240871 0.29259047 0.30126035 prediction 0.487316307916363 Functional Loss - NFYC ENSG00000066136 CDS Human protein_coding chr1:41236480 chr1:41236482 synonymous SNV 0.998 1 23 hm5C_associated_SNPs_67617 0 0 1 0 1 NFYC chr1:41236384 3'AG 41236384 Downstream 99bp
chrX 10106811 10106811 1 + C T rs140610439 10106809 + 10106789 10106829 41 CCCTGGACTTGGAGCTGGATCTCCAGGCGTCGAGAACACGG CCCTGGACTTGGAGCTGGATCTTCAGGCGTCGAGAACACGG < 41bp 0.845265370496642 0.601607533405067 0.9373464 0.76256895 prediction 0.487315674183151 Functional Loss - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10106809 chrX:10106811 synonymous SNV . 0 23 hm5C_associated_SNPs_67618 0 0 0 0 1 WWC3 chrX:10106749 3'AG 10106749 Downstream 63bp
chr1 110171381 110171381 1 + C T UCEC 110171379 + 110171359 110171399 41 CGCGCTGGGCCGTCATGCACCGCGTGCACTCCCCCAACGTG CGCGCTGGGCCGTCATGCACCGTGTGCACTCCCCCAACGTG < 41bp 0.763620962616441 0.519965580900007 0.3333162 0.22787842 prediction 0.487310763432868 Functional Loss - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110171379 chr1:110171381 synonymous SNV . 0 23 hm5C_associated_SNPs_67620 0 0 0 0 1 AMPD2 chr1:110171428 5'GT 110171428 Upstream 48bp
chr17 37818594 37818594 1 + C T SKCM 37818592 + 37818572 37818612 41 TCTGGATTCTTAATACAGATCTCAAGGTGGGGTGCTGGGGG TCTGGATTCTTAATACAGATCTTAAGGTGGGGTGCTGGGGG < 41bp 0.743651475439097 0.464899583847906 0.16926071 0.1880733 prediction 0.487302950878193 Functional Loss - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37818592 chr17:37818594 synonymous SNV . 0 23 hm5C_associated_SNPs_67621 0 0 1 0 2 STARD3 chr17:37818504 3'AG 37818504 Downstream 91bp
chr17 37818594 37818594 1 + C T SKCM 37818592 + 37818572 37818612 41 TCTGGATTCTTAATACAGATCTCAAGGTGGGGTGCTGGGGG TCTGGATTCTTAATACAGATCTTAAGGTGGGGTGCTGGGGG < 41bp 0.743651475439097 0.464899583847906 0.16926071 0.1880733 prediction 0.487302950878193 Functional Loss - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37818592 chr17:37818594 synonymous SNV . 0 23 hm5C_associated_SNPs_67621 0 0 1 0 2 STARD3 chr17:37818597 5'GT 37818597 Upstream 4bp
chr11 8704798 8704798 1 + G C LAML 8704794 + 8704774 8704814 41 AACTTAGGGGCCACGTGAGCCACGGCCACGGCCGCATAGGT AACTTAGGGGCCACGTGAGCCACGCCCACGGCCGCATAGGT < 41bp 0.743647356290126 0.455340993956325 0.75375485 0.1692352 prediction 0.487294712580252 Functional Loss - RPL27A ENSG00000166441 CDS Human protein_coding chr11:8704794 chr11:8704798 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_67624 0 0 1 0 2 RPL27A chr11:8704749 3'AG 8704749 Downstream 50bp
chr11 8704798 8704798 1 + G C LAML 8704794 + 8704774 8704814 41 AACTTAGGGGCCACGTGAGCCACGGCCACGGCCGCATAGGT AACTTAGGGGCCACGTGAGCCACGCCCACGGCCGCATAGGT < 41bp 0.743647356290126 0.455340993956325 0.75375485 0.1692352 prediction 0.487294712580252 Functional Loss - RPL27A ENSG00000166441 CDS Human protein_coding chr11:8704794 chr11:8704798 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_67624 0 0 1 0 2 RPL27A chr11:8704812 5'GT 8704812 Upstream 15bp
chr6 116720798 116720798 1 + T C OV 116720797 + 116720777 116720817 41 GCCCGAGACATGGCCAAAGACTACATGGAGAGGATGGCAGC GCCCGAGACATGGCCAAAGACCACATGGAGAGGATGGCAGC < 41bp 0.743634819093063 0.479845938808739 0.91091096 0.15104315 prediction 0.487269638186125 Functional Loss - DSE ENSG00000111817 CDS Human protein_coding chr6:116720797 chr6:116720798 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_67628 0 0 1 0 1 DSE chr6:116720829 5'GT 116720829 Upstream 32bp
chr17 27067543 27067543 1 + G T STAD 27067541 + 27067521 27067561 41 CCAGCAGGTGCCCATGCCCCCAGGACAGGAAGCTCAGCGAG CCAGCAGGTGCCCATGCCCCCATGACAGGAAGCTCAGCGAG < 41bp 0.899718069263027 0.656085408479557 0.91852486 0.24700385 prediction 0.487265321566939 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27067541 chr17:27067543 stopgain 0.999 1 23 hm5C_associated_SNPs_67630 0 0 1 0 2 NEK8 chr17:27067481 3'AG 27067481 Downstream 63bp
chr17 27067543 27067543 1 + G T STAD 27067541 + 27067521 27067561 41 CCAGCAGGTGCCCATGCCCCCAGGACAGGAAGCTCAGCGAG CCAGCAGGTGCCCATGCCCCCATGACAGGAAGCTCAGCGAG < 41bp 0.899718069263027 0.656085408479557 0.91852486 0.24700385 prediction 0.487265321566939 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27067541 chr17:27067543 stopgain 0.999 1 23 hm5C_associated_SNPs_67630 0 0 1 0 2 NEK8 chr17:27067631 5'GT 27067631 Upstream 89bp
chr5 43616149 43616149 1 + C T HNSC 43616147 + 43616127 43616167 41 CAGGGATATGATGCGCTAAGCTCCATGGCCAACATTGCGGG CAGGGATATGATGCGCTAAGCTTCATGGCCAACATTGCGGG < 41bp 0.743626171846919 0.441225081947828 0.9445971 0.07199344 prediction 0.487252343693839 Functional Loss - NNT ENSG00000112992 CDS Human protein_coding chr5:43616147 chr5:43616149 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_67632 0 0 1 0 1 NNT chr5:43616167 5'GT 43616167 Upstream 19bp
chr1 109241810 109241810 1 + G C LUAD 109241809 + 109241789 109241829 41 CAAGGAGATCTCTGAGTCCACGGAGGTCCCCAAGAAGGTCA CAAGGAGATCTCTGAGTCCACCGAGGTCCCCAAGAAGGTCA < 41bp 0.860012703449471 0.616388287385515 0.8770307 0.78308415 prediction 0.487248832127912 Functional Loss - PRPF38B ENSG00000134186 CDS Human protein_coding chr1:109241809 chr1:109241810 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_67634 0 0 1 0 1 PRPF38B chr1:109241784 3'AG 109241784 Downstream 27bp
chr14 96949477 96949477 1 + G A SKCM 96949474 + 96949454 96949494 41 GGCTGCGGAGGAGCGGCTGGCCAGGGAGGCTGCTGAGGAAG GGCTGCGGAGGAGCGGCTGGCCAAGGAGGCTGCTGAGGAAG < 41bp 0.761532417471101 0.51791340997741 0.86389613 0.4004657 prediction 0.487238014987382 Functional Loss - AK7 ENSG00000140057 CDS Human protein_coding chr14:96949474 chr14:96949477 nonsynonymous SNV 0.716 0 24 hm5C_associated_SNPs_67636 0 0 0 0 1 AK7 chr14:96949556 5'GT 96949556 Upstream 80bp
chr15 40494810 40494810 1 + G A rs28989187 40494807 + 40494787 40494827 41 CAGTCCTCCTGCAGATCCCCCACGAGTTTTAGCTCAACGAA CAGTCCTCCTGCAGATCCCCCACAAGTTTTAGCTCAACGAA < 41bp 0.749999037613224 0.506387582489611 0.089173555 0.026078075 prediction 0.487222910247228 Functional Loss - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40494807 chr15:40494810 nonsynonymous SNV 0.159 0 24 hm5C_associated_SNPs_67637 2 0 1 0 2 BUB1B chr15:40494790 3'AG 40494790 Downstream 21bp
chr15 40494810 40494810 1 + G A rs28989187 40494807 + 40494787 40494827 41 CAGTCCTCCTGCAGATCCCCCACGAGTTTTAGCTCAACGAA CAGTCCTCCTGCAGATCCCCCACAAGTTTTAGCTCAACGAA < 41bp 0.749999037613224 0.506387582489611 0.089173555 0.026078075 prediction 0.487222910247228 Functional Loss - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40494807 chr15:40494810 nonsynonymous SNV 0.159 0 24 hm5C_associated_SNPs_67637 2 0 1 0 2 BUB1B chr15:40494895 5'GT 40494895 Upstream 86bp
chr2 148684693 148684693 1 + C T STAD 148684691 + 148684671 148684711 41 CCATTGAAGAATGTTGGGATCACGACGCAGAAGCCAGGTTA CCATTGAAGAATGTTGGGATCATGACGCAGAAGCCAGGTTA < 41bp 0.808723749016125 0.565115859786391 0.2320753 0.33427817 prediction 0.487215778459467 Functional Loss - ACVR2A ENSG00000121989 CDS Human protein_coding chr2:148684691 chr2:148684693 synonymous SNV . 0 23 hm5C_associated_SNPs_67640 0 0 1 0 1 ACVR2A chr2:148684649 3'AG 148684649 Downstream 45bp
chr11 61536758 61536758 1 + C T MESO 61536756 + 61536736 61536776 41 CTGCCGGACTCTCCCCCAGACTCGGGCTCCGAGGCCTACTC CTGCCGGACTCTCCCCCAGACTTGGGCTCCGAGGCCTACTC < 41bp 0.743604434050601 0.474899103335339 0.6119041 0.37114632 prediction 0.487208868101203 Functional Loss - MYRF ENSG00000124920 CDS Human protein_coding chr11:61536756 chr11:61536758 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_67643 0 0 1 0 2 MYRF chr11:61536732 3'AG 61536732 Downstream 27bp
chr11 61536758 61536758 1 + C T MESO 61536756 + 61536736 61536776 41 CTGCCGGACTCTCCCCCAGACTCGGGCTCCGAGGCCTACTC CTGCCGGACTCTCCCCCAGACTTGGGCTCCGAGGCCTACTC < 41bp 0.743604434050601 0.474899103335339 0.6119041 0.37114632 prediction 0.487208868101203 Functional Loss - MYRF ENSG00000124920 CDS Human protein_coding chr11:61536756 chr11:61536758 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_67643 0 0 1 0 2 MYRF chr11:61536793 5'GT 61536793 Upstream 36bp
chr16 88870976 88870976 1 + G A rs140663920 88870973 + 88870953 88870993 41 GTTTCCAGCCCCAGTACCCCCGAGGCCCCAGACATCCCAGC GTTTCCAGCCCCAGTACCCCCGAAGCCCCAGACATCCCAGC < 41bp 0.745374566492376 0.501780282224093 0.8349027 0.36357623 prediction 0.487188568536566 Functional Loss - CDT1 ENSG00000167513 CDS Human protein_coding chr16:88870973 chr16:88870976 synonymous SNV . 0 24 hm5C_associated_SNPs_67649 0 0 1 0 2 CDT1 chr16:88870953 3'AG 88870953 Downstream 24bp
chr16 88870976 88870976 1 + G A rs140663920 88870973 + 88870953 88870993 41 GTTTCCAGCCCCAGTACCCCCGAGGCCCCAGACATCCCAGC GTTTCCAGCCCCAGTACCCCCGAAGCCCCAGACATCCCAGC < 41bp 0.745374566492376 0.501780282224093 0.8349027 0.36357623 prediction 0.487188568536566 Functional Loss - CDT1 ENSG00000167513 CDS Human protein_coding chr16:88870973 chr16:88870976 synonymous SNV . 0 24 hm5C_associated_SNPs_67649 0 0 1 0 2 CDT1 chr16:88871075 5'GT 88871075 Upstream 100bp
chr2 31484537 31484537 1 + C T COAD 31484535 + 31484515 31484555 41 ATGGCCGGATCGAGCGGGAGCACCAGATCTCACCTGGGGAC ATGGCCGGATCGAGCGGGAGCATCAGATCTCACCTGGGGAC < 41bp 0.743594059361335 0.458409160627801 0.8300997 0.5874644 prediction 0.48718811872267 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31484535 chr2:31484537 synonymous SNV . 0 23 hm5C_associated_SNPs_67650 0 0 1 0 1 EHD3 chr2:31484579 5'GT 31484579 Upstream 43bp
chr12 110941640 110941640 1 + C T UCEC 110941638 + 110941618 110941658 41 GAAAGCAGTTCAAGCTCTATCACGAATTAGTGACGAGTTCT GAAAGCAGTTCAAGCTCTATCATGAATTAGTGACGAGTTCT < 41bp 0.807339500595783 0.563752352834527 0.18987277 0.33743 prediction 0.487174295522512 Functional Loss - RAD9B ENSG00000151164 CDS Human protein_coding chr12:110941638 chr12:110941640 stopgain 1.000 1 23 hm5C_associated_SNPs_67652 0 0 0 0 2 RAD9B chr12:110941611 3'AG 110941611 Downstream 30bp
chr12 110941640 110941640 1 + C T UCEC 110941638 + 110941618 110941658 41 GAAAGCAGTTCAAGCTCTATCACGAATTAGTGACGAGTTCT GAAAGCAGTTCAAGCTCTATCATGAATTAGTGACGAGTTCT < 41bp 0.807339500595783 0.563752352834527 0.18987277 0.33743 prediction 0.487174295522512 Functional Loss - RAD9B ENSG00000151164 CDS Human protein_coding chr12:110941638 chr12:110941640 stopgain 1.000 1 23 hm5C_associated_SNPs_67652 0 0 0 0 2 RAD9B chr12:110941681 5'GT 110941681 Upstream 42bp
chr2 118860815 118860815 1 + G C LUAD 118860811 + 118860791 118860831 41 ACCCCTGCATTGACAGACATCTAGGAGAACCACATAAATTT ACCCCTGCATTGACAGACATCTAGCAGAACCACATAAATTT < 41bp 0.743582685266143 0.469644668148501 0.3754632 0.14890671 prediction 0.487165370532287 Functional Loss - INSIG2 ENSG00000125629 CDS Human protein_coding chr2:118860811 chr2:118860815 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_67654 0 0 1 0 1 INSIG2 chr2:118860897 5'GT 118860897 Upstream 83bp
chr2 118860814 118860814 1 + G T LUAD 118860811 + 118860791 118860831 41 ACCCCTGCATTGACAGACATCTAGGAGAACCACATAAATTT ACCCCTGCATTGACAGACATCTATGAGAACCACATAAATTT < 41bp 0.743582685266143 0.365799950869551 0.3754632 0.20483896 prediction 0.487165370532287 Functional Loss - INSIG2 ENSG00000125629 CDS Human protein_coding chr2:118860811 chr2:118860814 stopgain 1.000 1 24 hm5C_associated_SNPs_67655 0 0 1 0 1 INSIG2 chr2:118860897 5'GT 118860897 Upstream 84bp
chr13 111926284 111926284 1 + C T UCEC 111926282 + 111926262 111926302 41 ACCCTACGCTGCTCAAAGAGCTCGAGAGACACATGGAGGTA ACCCTACGCTGCTCAAAGAGCTTGAGAGACACATGGAGGTA < 41bp 0.743578897514165 0.462549474463436 0.08937144 0.09840512 prediction 0.487157795028329 Functional Loss - ARHGEF7 ENSG00000102606 CDS Human protein_coding chr13:111926282 chr13:111926284 synonymous SNV . 0 23 hm5C_associated_SNPs_67656 0 0 1 0 1 ARHGEF7 chr13:111926299 5'GT 111926299 Upstream 16bp
chr4 110788886 110788886 1 + G T TGCT 110788883 + 110788863 110788903 41 TTGACCCTGCTATAGTGCTTCTGGATCCACTGATGACTTGC TTGACCCTGCTATAGTGCTTCTGTATCCACTGATGACTTGC < 41bp 0.743577156107503 0.361069424513679 0.37750295 0.11299643 prediction 0.487154312215007 Functional Loss - LRIT3 ENSG00000183423 CDS Human protein_coding chr4:110788883 chr4:110788886 nonsynonymous SNV 0.851 4 24 hm5C_associated_SNPs_67658 0 0 1 0 1 LRIT3 chr4:110788797 3'AG 110788797 Downstream 90bp
chr19 22836759 22836759 1 + G T STAD 22836757 + 22836737 22836777 41 AGCCAGACCTGATCACCTGTCTGGAGCAAGGAAAAGAACCT AGCCAGACCTGATCACCTGTCTTGAGCAAGGAAAAGAACCT < 41bp 0.882892191885438 0.639317673268395 0.15551123 0.096374154 prediction 0.487149037234086 Functional Loss - ZNF492 ENSG00000229676 CDS Human protein_coding chr19:22836757 chr19:22836759 synonymous SNV . 0 23 hm5C_associated_SNPs_67660 0 0 0 0 2 ZNF492 chr19:22836722 3'AG 22836722 Downstream 38bp
chr19 22836759 22836759 1 + G T STAD 22836757 + 22836737 22836777 41 AGCCAGACCTGATCACCTGTCTGGAGCAAGGAAAAGAACCT AGCCAGACCTGATCACCTGTCTTGAGCAAGGAAAAGAACCT < 41bp 0.882892191885438 0.639317673268395 0.15551123 0.096374154 prediction 0.487149037234086 Functional Loss - ZNF492 ENSG00000229676 CDS Human protein_coding chr19:22836757 chr19:22836759 synonymous SNV . 0 23 hm5C_associated_SNPs_67660 0 0 0 0 2 ZNF492 chr19:22836817 5'GT 22836817 Upstream 59bp
chr3 184577792 184577792 1 + G T SARC 184577789 + 184577769 184577809 41 TCAGGTAAAGAGAGATGAATCTGGAGCAATACATGTTACTA TCAGGTAAAGAGAGATGAATCTGTAGCAATACATGTTACTA < 41bp 0.74357092876748 0.385201020395303 0.34748775 0.16929999 prediction 0.487141857534959 Functional Loss - VPS8 ENSG00000156931 CDS Human protein_coding chr3:184577789 chr3:184577792 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_67661 0 0 1 0 2 VPS8 chr3:184577773 3'AG 184577773 Downstream 20bp
chr3 184577792 184577792 1 + G T SARC 184577789 + 184577769 184577809 41 TCAGGTAAAGAGAGATGAATCTGGAGCAATACATGTTACTA TCAGGTAAAGAGAGATGAATCTGTAGCAATACATGTTACTA < 41bp 0.74357092876748 0.385201020395303 0.34748775 0.16929999 prediction 0.487141857534959 Functional Loss - VPS8 ENSG00000156931 CDS Human protein_coding chr3:184577789 chr3:184577792 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_67661 0 0 1 0 2 VPS8 chr3:184577853 5'GT 184577853 Upstream 62bp
chr8 26510829 26510829 1 + C T SKCM 26510827 + 26510807 26510847 41 TGTGACGCCCAAGACAGTCACTCCAGCCTCCTCGGCCAAGA TGTGACGCCCAAGACAGTCACTTCAGCCTCCTCGGCCAAGA < 41bp 0.849096917251561 0.605539742476201 0.9463204 0.30131418 prediction 0.48711434955072 Functional Loss - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26510827 chr8:26510829 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_67664 0 0 1 0 2 DPYSL2 chr8:26510748 3'AG 26510748 Downstream 82bp
chr8 26510829 26510829 1 + C T SKCM 26510827 + 26510807 26510847 41 TGTGACGCCCAAGACAGTCACTCCAGCCTCCTCGGCCAAGA TGTGACGCCCAAGACAGTCACTTCAGCCTCCTCGGCCAAGA < 41bp 0.849096917251561 0.605539742476201 0.9463204 0.30131418 prediction 0.48711434955072 Functional Loss - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26510827 chr8:26510829 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_67664 0 0 1 0 2 DPYSL2 chr8:26510913 5'GT 26510913 Upstream 85bp
chr3 102189291 102189291 1 + C T LUSC 102189289 + 102189269 102189309 41 GGAGGAGGACGACTTGGAGCCCCCAGAGCTCTTCTGGCAGC GGAGGAGGACGACTTGGAGCCCTCAGAGCTCTTCTGGCAGC < 41bp 0.743548692740571 0.461250644609847 0.18118182 0.075569004 prediction 0.487097385481143 Functional Loss - ZPLD1 ENSG00000170044 CDS Human protein_coding chr3:102189289 chr3:102189291 synonymous SNV . 0 23 hm5C_associated_SNPs_67668 0 0 0 0 2 ZPLD1 chr3:102189238 3'AG 102189238 Downstream 54bp
chr3 102189291 102189291 1 + C T LUSC 102189289 + 102189269 102189309 41 GGAGGAGGACGACTTGGAGCCCCCAGAGCTCTTCTGGCAGC GGAGGAGGACGACTTGGAGCCCTCAGAGCTCTTCTGGCAGC < 41bp 0.743548692740571 0.461250644609847 0.18118182 0.075569004 prediction 0.487097385481143 Functional Loss - ZPLD1 ENSG00000170044 CDS Human protein_coding chr3:102189289 chr3:102189291 synonymous SNV . 0 23 hm5C_associated_SNPs_67668 0 0 0 0 2 ZPLD1 chr3:102189346 5'GT 102189346 Upstream 56bp
chr22 38468531 38468531 1 + G T SARC 38468529 + 38468509 38468549 41 CGGGGTGCGGGAGCCCCAGCCAGCTGCGAGCGAGGCTTTTG CGGGGTGCGGGAGCCCCAGCCATCTGCGAGCGAGGCTTTTG < 41bp 0.743543784795018 0.385324749137355 0.89335585 0.7319962 prediction 0.487087569590037 Functional Loss - PICK1 ENSG00000100151 CDS Human protein_coding chr22:38468529 chr22:38468531 nonsynonymous SNV 0.279 1 23 hm5C_associated_SNPs_67670 0 0 1 0 2 PICK1 chr22:38468484 3'AG 38468484 Downstream 48bp
chr22 38468531 38468531 1 + G T SARC 38468529 + 38468509 38468549 41 CGGGGTGCGGGAGCCCCAGCCAGCTGCGAGCGAGGCTTTTG CGGGGTGCGGGAGCCCCAGCCATCTGCGAGCGAGGCTTTTG < 41bp 0.743543784795018 0.385324749137355 0.89335585 0.7319962 prediction 0.487087569590037 Functional Loss - PICK1 ENSG00000100151 CDS Human protein_coding chr22:38468529 chr22:38468531 nonsynonymous SNV 0.279 1 23 hm5C_associated_SNPs_67670 0 0 1 0 2 PICK1 chr22:38468617 5'GT 38468617 Upstream 87bp
chr7 142563789 142563789 1 + C T SKCM 142563787 + 142563767 142563807 41 CATGCTACACTGGCGCCTGCCTCGGGAGCTGGGGGGTCGAG CATGCTACACTGGCGCCTGCCTTGGGAGCTGGGGGGTCGAG < 41bp 0.823792374552956 0.58025269084394 0.027136981 0.020856142 prediction 0.487079367418031 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142563787 chr7:142563789 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_67671 0 0 0 0 1 EPHB6 chr7:142563715 3'AG 142563715 Downstream 75bp
chr20 62891601 62891601 1 + A C SKCM 62891600 + 62891580 62891620 41 GGCAGTGGCACTGGGTATCTCAGCTCCATGGTGGGCCTCAT GGCAGTGGCACTGGGTATCTCCGCTCCATGGTGGGCCTCAT < 41bp 0.743539122423654 0.484709327510892 0.390093 0.38198632 prediction 0.487078244847309 Functional Loss - PCMTD2 ENSG00000203880 CDS Human protein_coding chr20:62891600 chr20:62891601 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_67673 0 0 1 0 1 PCMTD2 chr20:62891625 5'GT 62891625 Upstream 25bp
chr12 1893206 1893206 1 + C T rs185048932 1893204 + 1893184 1893224 41 CCCTGTATGCTGCCCGGATCCCCGAACGCTTTTTCCCTGGC CCCTGTATGCTGCCCGGATCCCTGAACGCTTTTTCCCTGGC < 41bp 0.841142746312208 0.597610320376654 0.26438642 0.09918782 prediction 0.487064851871108 Functional Loss - ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1893204 chr12:1893206 synonymous SNV . 0 23 hm5C_associated_SNPs_67675 0 0 1 0 1 ADIPOR2 chr12:1893239 5'GT 1893239 Upstream 34bp
chr13 102345032 102345032 1 + C T GBM 102345030 + 102345010 102345050 41 ATGATCGCCGCTGTGAAGACCTCGATGGTGTGGTCTGTGGA ATGATCGCCGCTGTGAAGACCTTGATGGTGTGGTCTGTGGA < 41bp 0.743528788393827 0.439217792943327 0.8444536 0.1729151 prediction 0.487057576787655 Functional Loss - ITGBL1 ENSG00000198542 CDS Human protein_coding chr13:102345030 chr13:102345032 synonymous SNV . 0 23 hm5C_associated_SNPs_67677 0 0 0 0 2 ITGBL1 chr13:102344935 3'AG 102344935 Downstream 98bp
chr13 102345032 102345032 1 + C T GBM 102345030 + 102345010 102345050 41 ATGATCGCCGCTGTGAAGACCTCGATGGTGTGGTCTGTGGA ATGATCGCCGCTGTGAAGACCTTGATGGTGTGGTCTGTGGA < 41bp 0.743528788393827 0.439217792943327 0.8444536 0.1729151 prediction 0.487057576787655 Functional Loss - ITGBL1 ENSG00000198542 CDS Human protein_coding chr13:102345030 chr13:102345032 synonymous SNV . 0 23 hm5C_associated_SNPs_67677 0 0 0 0 2 ITGBL1 chr13:102345051 5'GT 102345051 Upstream 20bp
chr3 13679104 13679104 1 + G T UCEC 13679102 + 13679082 13679122 41 GCCATGACTTCCTGGAGTGCCAGAACTCGCCAGCGCGCATC GCCATGACTTCCTGGAGTGCCATAACTCGCCAGCGCGCATC < 41bp 0.743525520506696 0.403887534653617 0.42614353 0.06748372 prediction 0.487051041013393 Functional Loss - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13679102 chr3:13679104 nonsynonymous SNV 0.039 3 23 hm5C_associated_SNPs_67678 0 0 0 0 1 FBLN2 chr3:13679062 3'AG 13679062 Downstream 43bp
chr18 72185805 72185805 1 + C T STAD 72185803 + 72185783 72185823 41 AGTTCAAGGTGTACATGGGCCACGGTGGGAAGCCCTGGGTC AGTTCAAGGTGTACATGGGCCATGGTGGGAAGCCCTGGGTC < 41bp 0.816218744526921 0.572710890058913 0.25880784 0.33526802 prediction 0.487015708936015 Functional Loss - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72185803 chr18:72185805 synonymous SNV . 0 23 hm5C_associated_SNPs_67684 0 0 0 0 2 CNDP2 chr18:72185734 3'AG 72185734 Downstream 72bp
chr18 72185805 72185805 1 + C T STAD 72185803 + 72185783 72185823 41 AGTTCAAGGTGTACATGGGCCACGGTGGGAAGCCCTGGGTC AGTTCAAGGTGTACATGGGCCATGGTGGGAAGCCCTGGGTC < 41bp 0.816218744526921 0.572710890058913 0.25880784 0.33526802 prediction 0.487015708936015 Functional Loss - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72185803 chr18:72185805 synonymous SNV . 0 23 hm5C_associated_SNPs_67684 0 0 0 0 2 CNDP2 chr18:72185875 5'GT 72185875 Upstream 71bp
chrX 49595088 49595088 1 + C T UCEC 49595086 + 49595066 49595106 41 GAGGAGATGGTCAGGAGGCTCCCGATGTGGTTGCATTCGTG GAGGAGATGGTCAGGAGGCTCCTGATGTGGTTGCATTCGTG < 41bp 0.796670766613646 0.553165037173894 0.30653816 0.48978186 prediction 0.487011458879504 Functional Loss - PAGE4 ENSG00000101951 CDS Human protein_coding chrX:49595086 chrX:49595088 synonymous SNV . 0 23 hm5C_associated_SNPs_67686 0 0 0 0 2 PAGE4 chrX:49595002 3'AG 49595002 Downstream 87bp
chrX 49595088 49595088 1 + C T UCEC 49595086 + 49595066 49595106 41 GAGGAGATGGTCAGGAGGCTCCCGATGTGGTTGCATTCGTG GAGGAGATGGTCAGGAGGCTCCTGATGTGGTTGCATTCGTG < 41bp 0.796670766613646 0.553165037173894 0.30653816 0.48978186 prediction 0.487011458879504 Functional Loss - PAGE4 ENSG00000101951 CDS Human protein_coding chrX:49595086 chrX:49595088 synonymous SNV . 0 23 hm5C_associated_SNPs_67686 0 0 0 0 2 PAGE4 chrX:49595109 5'GT 49595109 Upstream 22bp
chr2 27666311 27666311 1 + G A LGG 27666308 + 27666288 27666328 41 CCCTTCTTTGCTCATGTCTGCAGGGGAGGCTGCTCTATCTG CCCTTCTTTGCTCATGTCTGCAGAGGAGGCTGCTCTATCTG < 41bp 0.744581910971381 0.50107925785485 0.9290011 0.8774878 prediction 0.487005306233062 Functional Loss - KRTCAP3 ENSG00000157992 CDS Human protein_coding chr2:27666308 chr2:27666311 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_67688 0 0 1 0 2 KRTCAP3 chr2:27666265 3'AG 27666265 Downstream 47bp
chr2 27666311 27666311 1 + G A LGG 27666308 + 27666288 27666328 41 CCCTTCTTTGCTCATGTCTGCAGGGGAGGCTGCTCTATCTG CCCTTCTTTGCTCATGTCTGCAGAGGAGGCTGCTCTATCTG < 41bp 0.744581910971381 0.50107925785485 0.9290011 0.8774878 prediction 0.487005306233062 Functional Loss - KRTCAP3 ENSG00000157992 CDS Human protein_coding chr2:27666308 chr2:27666311 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_67688 0 0 1 0 2 KRTCAP3 chr2:27666399 5'GT 27666399 Upstream 89bp
chr17 59557599 59557599 1 + G A SARC 59557596 + 59557576 59557616 41 AGAACGGGGCACACTCACAGCTCGCGGAGCCGCAGGACCTG AGAACGGGGCACACTCACAGCTCACGGAGCCGCAGGACCTG < 41bp 0.748925387897713 0.505425890704709 0.19761854 0.11594388 prediction 0.486998994386008 Functional Loss - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59557596 chr17:59557599 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_67690 0 0 0 0 1 TBX4 chr17:59557680 5'GT 59557680 Upstream 82bp
chr11 977185 977185 1 + G T LUAD 977182 + 977162 977202 41 GATCTTGTCCCCATGGGCGACTGGACATCCCGAGTGGTGCA GATCTTGTCCCCATGGGCGACTGTACATCCCGAGTGGTGCA < 41bp 0.743499189207574 0.350262060458186 0.19145525 0.19000018 prediction 0.486998378415147 Functional Loss - AP2A2 ENSG00000183020 CDS Human protein_coding chr11:977182 chr11:977185 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_67691 0 0 1 2 2 AP2A2 chr11:977095 3'AG 977095 Downstream 91bp
chr11 977185 977185 1 + G T LUAD 977182 + 977162 977202 41 GATCTTGTCCCCATGGGCGACTGGACATCCCGAGTGGTGCA GATCTTGTCCCCATGGGCGACTGTACATCCCGAGTGGTGCA < 41bp 0.743499189207574 0.350262060458186 0.19145525 0.19000018 prediction 0.486998378415147 Functional Loss - AP2A2 ENSG00000183020 CDS Human protein_coding chr11:977182 chr11:977185 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_67691 0 0 1 2 2 AP2A2 chr11:977224 5'GT 977224 Upstream 40bp
chr1 7869978 7869978 1 + G T SARC 7869976 + 7869956 7869996 41 GTTCACGTGAGCGTGTCCAGCGGCTACGGGAGCCTGGGGAG GTTCACGTGAGCGTGTCCAGCGTCTACGGGAGCCTGGGGAG < 41bp 0.743498324898639 0.379945118059305 0.6016594 0.3970953 prediction 0.486996649797277 Functional Loss - PER3 ENSG00000049246 CDS Human protein_coding chr1:7869976 chr1:7869978 nonsynonymous SNV 0.731 4 23 hm5C_associated_SNPs_67692 0 0 0 0 1 PER3 chr1:7869953 3'AG 7869953 Downstream 26bp
chr2 71187161 71187161 1 + G A STAD 71187158 + 71187138 71187178 41 ACGTCATGAACAGCATTGCCCGCGGCCAGAAGATCCCCATC ACGTCATGAACAGCATTGCCCGCAGCCAGAAGATCCCCATC < 41bp 0.758537161658463 0.515047765871068 0.26897502 0.027857661 prediction 0.486978791574789 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71187158 chr2:71187161 nonsynonymous SNV 0.143 4 24 hm5C_associated_SNPs_67694 0 0 0 0 2 ATP6V1B1 chr2:71187069 3'AG 71187069 Downstream 93bp
chr2 71187161 71187161 1 + G A STAD 71187158 + 71187138 71187178 41 ACGTCATGAACAGCATTGCCCGCGGCCAGAAGATCCCCATC ACGTCATGAACAGCATTGCCCGCAGCCAGAAGATCCCCATC < 41bp 0.758537161658463 0.515047765871068 0.26897502 0.027857661 prediction 0.486978791574789 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71187158 chr2:71187161 nonsynonymous SNV 0.143 4 24 hm5C_associated_SNPs_67694 0 0 0 0 2 ATP6V1B1 chr2:71187208 5'GT 71187208 Upstream 48bp
chr21 42749852 42749852 1 + C T UCEC 42749850 + 42749830 42749870 41 GCCGTCATCGGGGACCAGAGCTCGGGCAAGAGCTCTGTGCT GCCGTCATCGGGGACCAGAGCTTGGGCAAGAGCTCTGTGCT < 41bp 0.771742347707353 0.528256044562994 0.807767 0.8475925 prediction 0.486972606288719 Functional Loss - MX2 ENSG00000183486 CDS Human protein_coding chr21:42749850 chr21:42749852 nonsynonymous SNV 0.776 5 23 hm5C_associated_SNPs_67696 0 0 0 0 1 MX2 chr21:42749908 5'GT 42749908 Upstream 57bp
chr12 6424803 6424803 1 + G T GBM 6424800 + 6424780 6424820 41 CTGATCTACGTGAGAAAGCTCAAGATCATGACTGATGTGAG CTGATCTACGTGAGAAAGCTCAATATCATGACTGATGTGAG < 41bp 0.743478837098915 0.344413003320955 0.18881017 0.09003022 prediction 0.486957674197831 Functional Loss - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6424800 chr12:6424803 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_67700 0 0 0 0 2 PLEKHG6 chr12:6424720 3'AG 6424720 Downstream 84bp
chr12 6424803 6424803 1 + G T GBM 6424800 + 6424780 6424820 41 CTGATCTACGTGAGAAAGCTCAAGATCATGACTGATGTGAG CTGATCTACGTGAGAAAGCTCAATATCATGACTGATGTGAG < 41bp 0.743478837098915 0.344413003320955 0.18881017 0.09003022 prediction 0.486957674197831 Functional Loss - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6424800 chr12:6424803 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_67700 0 0 0 0 2 PLEKHG6 chr12:6424815 5'GT 6424815 Upstream 13bp
chr2 74729853 74729853 1 - C A UCEC 74729855 - 74729835 74729875 41 GGAGGGTGGCGGTGGGCGCGCAGAGATCTTTGCAAAACAGC GGAGGGTGGCGGTGGGCGCGCATAGATCTTTGCAAAACAGC < 41bp 0.743475701314678 0.394003219314589 0.44012922 0.20776916 prediction 0.486951402629356 Functional Loss - LBX2 ENSG00000179528 CDS Human protein_coding chr2:74729855 chr2:74729853 nonsynonymous SNV 0.007 3 23 hm5C_associated_SNPs_67701 0 0 0 0 1 LBX2 chr2:74729794 5'GT 74729794 Upstream 60bp
chr12 124239023 124239023 1 + G T SARC 124239021 + 124239001 124239041 41 TCCATTCCATCGAGTACTGTCTGGGATGCATCTCCAACACC TCCATTCCATCGAGTACTGTCTTGGATGCATCTCCAACACC < 41bp 0.743472029060771 0.403995020919128 0.39426053 0.08632842 prediction 0.486944058121543 Functional Loss - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124239021 chr12:124239023 synonymous SNV . 0 23 hm5C_associated_SNPs_67704 0 0 1 0 2 ATP6V0A2 chr12:124238967 3'AG 124238967 Downstream 57bp
chr12 124239023 124239023 1 + G T SARC 124239021 + 124239001 124239041 41 TCCATTCCATCGAGTACTGTCTGGGATGCATCTCCAACACC TCCATTCCATCGAGTACTGTCTTGGATGCATCTCCAACACC < 41bp 0.743472029060771 0.403995020919128 0.39426053 0.08632842 prediction 0.486944058121543 Functional Loss - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124239021 chr12:124239023 synonymous SNV . 0 23 hm5C_associated_SNPs_67704 0 0 1 0 2 ATP6V0A2 chr12:124239084 5'GT 124239084 Upstream 62bp
chr6 43270114 43270114 1 + C T COAD 43270112 + 43270092 43270132 41 CAAGCTGGGACACTGCTGGGCACGGCCCTGGCGTTCGGCAC CAAGCTGGGACACTGCTGGGCATGGCCCTGGCGTTCGGCAC < 41bp 0.750605849105567 0.507136996753702 0.13875732 0.17420357 prediction 0.486937704703731 Functional Loss - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43270112 chr6:43270114 nonsynonymous SNV 0.081 3 23 hm5C_associated_SNPs_67708 0 0 1 0 1 SLC22A7 chr6:43270152 5'GT 43270152 Upstream 39bp
chr20 32371563 32371563 1 + G C HNSC 32371562 + 32371542 32371582 41 TTCCTTGTGAACGCTACCTGCGGCGTCATCTGCCCACCCAC TTCCTTGTGAACGCTACCTGCCGCGTCATCTGCCCACCCAC < 41bp 0.743465673288547 0.409102020114312 0.8458725 0.21406749 prediction 0.486931346577093 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32371562 chr20:32371563 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_67710 0 0 0 0 1 ZNF341 chr20:32371538 3'AG 32371538 Downstream 26bp
chr20 32371564 32371564 1 + G T SARC 32371562 + 32371542 32371582 41 TTCCTTGTGAACGCTACCTGCGGCGTCATCTGCCCACCCAC TTCCTTGTGAACGCTACCTGCGTCGTCATCTGCCCACCCAC < 41bp 0.743465673288547 0.379957857980092 0.8458725 0.081101984 prediction 0.486931346577093 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32371562 chr20:32371564 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_67711 0 0 0 0 1 ZNF341 chr20:32371538 3'AG 32371538 Downstream 27bp
chr17 59533902 59533902 1 + G A ESCA 59533899 + 59533879 59533919 41 AGCGAGGAGGCCTTCCGGGCCCCGGGCCCAGCGCTCGGAGA AGCGAGGAGGCCTTCCGGGCCCCAGGCCCAGCGCTCGGAGA < 41bp 0.746884918648062 0.503421020295787 0.2108669 0.14054802 prediction 0.486927796704551 Functional Loss - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59533899 chr17:59533902 synonymous SNV . 0 24 hm5C_associated_SNPs_67712 0 0 0 0 1 TBX4 chr17:59533849 3'AG 59533849 Downstream 54bp
chr4 647752 647752 1 - G A UVM 647754 - 647734 647774 41 TTGGTCATGTCCAGGAGGCCCACGGAGTACCGCTCGCAGTT TTGGTCATGTCCAGGAGGCCCATGGAGTACCGCTCGCAGTT < 41bp 0.756278081561855 0.512819295812295 0.63799214 0.76158214 prediction 0.48691757149912 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:647754 chr4:647752 nonsynonymous SNV 0.647 4 23 hm5C_associated_SNPs_67714 0 0 0 0 1 PDE6B chr4:647760 3'AG 647760 Downstream 9bp
chr16 855874 855874 1 + G T UCEC 855872 + 855852 855892 41 CCTGGGGCCCAGAGCAGCCCCAGAACAGACACAAGCATCCC CCTGGGGCCCAGAGCAGCCCCATAACAGACACAAGCATCCC < 41bp 0.743444560073176 0.407913577542107 0.30672574 0.1876835 prediction 0.486889120146352 Functional Loss - PRR25 ENSG00000167945 CDS Human protein_coding chr16:855872 chr16:855874 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_67715 0 0 0 0 1 PRR25 chr16:855910 5'GT 855910 Upstream 37bp
chr9 131256904 131256904 1 + A C CHOL 131256900 + 131256880 131256920 41 ACCAACTGCAGGGCTATGAGCGGAAGAACATCGACCTCACA ACCAACTGCAGGGCTATGAGCGGACGAACATCGACCTCACA < 41bp 0.743433063326581 0.365081038169561 0.9001686 0.9257903 prediction 0.486866126653162 Functional Loss - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131256900 chr9:131256904 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_67718 0 0 1 0 1 ODF2 chr9:131256947 5'GT 131256947 Upstream 44bp
chrX 118151505 118151505 1 + C T UCEC 118151503 + 118151483 118151523 41 GTTTCTCTGTTGCAGATGAACCCGAATGGCCCAGCCTGGTG GTTTCTCTGTTGCAGATGAACCTGAATGGCCCAGCCTGGTG < 41bp 0.743432844194192 0.478984949659115 0.39595416 0.27141416 prediction 0.486865688388385 Functional Loss - LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118151503 chrX:118151505 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_67720 0 0 0 0 1 LONRF3 chrX:118151498 3'AG 118151498 Downstream 8bp
chr2 47249043 47249043 1 + G A BRCA 47249040 + 47249020 47249060 41 TTGCCATGATGGTGATCAGCCTCGGAGAGGAAGCCGGGGAG TTGCCATGATGGTGATCAGCCTCAGAGAGGAAGCCGGGGAG < 41bp 0.746094382033838 0.50266237817962 0.29122826 0.2771312 prediction 0.486864007708436 Functional Loss - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47249040 chr2:47249043 nonsynonymous SNV 0.037 0 24 hm5C_associated_SNPs_67721 0 0 1 0 2 TTC7A chr2:47249001 3'AG 47249001 Downstream 43bp
chr2 47249043 47249043 1 + G A BRCA 47249040 + 47249020 47249060 41 TTGCCATGATGGTGATCAGCCTCGGAGAGGAAGCCGGGGAG TTGCCATGATGGTGATCAGCCTCAGAGAGGAAGCCGGGGAG < 41bp 0.746094382033838 0.50266237817962 0.29122826 0.2771312 prediction 0.486864007708436 Functional Loss - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47249040 chr2:47249043 nonsynonymous SNV 0.037 0 24 hm5C_associated_SNPs_67721 0 0 1 0 2 TTC7A chr2:47249118 5'GT 47249118 Upstream 76bp
chr20 30385294 30385294 1 + A C KIRC 30385293 + 30385273 30385313 41 TCTCAGGAGCCCTTTGTTCCCAAGAAAGAGAAGAAATCAGT TCTCAGGAGCCCTTTGTTCCCCAGAAAGAGAAGAAATCAGT < 41bp 0.796758940320343 0.553332660157821 0.37652326 0.11328539 prediction 0.486852560325045 Functional Loss - TPX2 ENSG00000088325 CDS Human protein_coding chr20:30385293 chr20:30385294 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_67724 0 0 1 0 2 TPX2 chr20:30385207 3'AG 30385207 Downstream 88bp
chr20 30385294 30385294 1 + A C KIRC 30385293 + 30385273 30385313 41 TCTCAGGAGCCCTTTGTTCCCAAGAAAGAGAAGAAATCAGT TCTCAGGAGCCCTTTGTTCCCCAGAAAGAGAAGAAATCAGT < 41bp 0.796758940320343 0.553332660157821 0.37652326 0.11328539 prediction 0.486852560325045 Functional Loss - TPX2 ENSG00000088325 CDS Human protein_coding chr20:30385293 chr20:30385294 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_67724 0 0 1 0 2 TPX2 chr20:30385318 5'GT 30385318 Upstream 25bp
chr1 119925554 119925554 1 + C T UCEC 119925552 + 119925532 119925572 41 GCACAGAATTCGCCTCCGTCCGCGGTACCTGAGAGATGTGT GCACAGAATTCGCCTCCGTCCGTGGTACCTGAGAGATGTGT < 41bp 0.796956362524226 0.553531060944266 0.34752676 0.137124 prediction 0.486850603159921 Functional Loss - HAO2 ENSG00000116882 CDS Human protein_coding chr1:119925552 chr1:119925554 nonsynonymous SNV 0.960 3 23 hm5C_associated_SNPs_67725 0 0 0 0 1 HAO2 chr1:119925538 3'AG 119925538 Downstream 17bp
chr5 161116328 161116328 1 + T C COAD 161116327 + 161116307 161116347 41 TGGATGGGCATGCTTGTCCACTCAAGTTTGGGAGCTGTAAG TGGATGGGCATGCTTGTCCACCCAAGTTTGGGAGCTGTAAG < 41bp 0.758685295106082 0.515264131065236 0.44746563 0.0778451 prediction 0.486842328081692 Functional Loss - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161116327 chr5:161116328 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_67728 0 0 0 0 2 GABRA6 chr5:161116260 3'AG 161116260 Downstream 69bp
chr5 161116328 161116328 1 + T C COAD 161116327 + 161116307 161116347 41 TGGATGGGCATGCTTGTCCACTCAAGTTTGGGAGCTGTAAG TGGATGGGCATGCTTGTCCACCCAAGTTTGGGAGCTGTAAG < 41bp 0.758685295106082 0.515264131065236 0.44746563 0.0778451 prediction 0.486842328081692 Functional Loss - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161116327 chr5:161116328 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_67728 0 0 0 0 2 GABRA6 chr5:161116342 5'GT 161116342 Upstream 15bp
chr3 53844086 53844086 1 + C T SKCM 53844084 + 53844064 53844104 41 GACCCGGTCGTGGGCCACCCCTCCAGCAACCCCTCCCTACC GACCCGGTCGTGGGCCACCCCTTCAGCAACCCCTCCCTACC < 41bp 0.743419882246557 0.453356305345438 0.96273893 0.1138536 prediction 0.486839764493114 Functional Loss - CACNA1D ENSG00000157388 CDS Human protein_coding chr3:53844084 chr3:53844086 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_67729 0 0 0 0 2 CACNA1D chr3:53843989 3'AG 53843989 Downstream 98bp
chr3 53844086 53844086 1 + C T SKCM 53844084 + 53844064 53844104 41 GACCCGGTCGTGGGCCACCCCTCCAGCAACCCCTCCCTACC GACCCGGTCGTGGGCCACCCCTTCAGCAACCCCTCCCTACC < 41bp 0.743419882246557 0.453356305345438 0.96273893 0.1138536 prediction 0.486839764493114 Functional Loss - CACNA1D ENSG00000157388 CDS Human protein_coding chr3:53844084 chr3:53844086 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_67729 0 0 0 0 2 CACNA1D chr3:53844005 3'AG 53844005 Downstream 82bp
chr17 73487171 73487171 1 + C T UCEC 73487169 + 73487149 73487189 41 GGGGCCACTTCCTGAGGGTGCTCGGGGGGACATCGCCAACG GGGGCCACTTCCTGAGGGTGCTTGGGGGGACATCGCCAACG < 41bp 0.791316893545671 0.547898994530347 0.84925395 0.92684126 prediction 0.486835798030647 Functional Loss - TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73487169 chr17:73487171 synonymous SNV . 0 23 hm5C_associated_SNPs_67731 0 0 1 0 2 TMEM94 chr17:73487130 3'AG 73487130 Downstream 42bp
chr17 73487171 73487171 1 + C T UCEC 73487169 + 73487149 73487189 41 GGGGCCACTTCCTGAGGGTGCTCGGGGGGACATCGCCAACG GGGGCCACTTCCTGAGGGTGCTTGGGGGGACATCGCCAACG < 41bp 0.791316893545671 0.547898994530347 0.84925395 0.92684126 prediction 0.486835798030647 Functional Loss - TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73487169 chr17:73487171 synonymous SNV . 0 23 hm5C_associated_SNPs_67731 0 0 1 0 2 TMEM94 chr17:73487234 5'GT 73487234 Upstream 64bp
chr5 37605224 37605224 1 + C T COAD 37605222 + 37605202 37605242 41 GCAAAAAAGTGTGTTTAAACCACGGACGATGCAAGGCAAAA GCAAAAAAGTGTGTTTAAACCATGGACGATGCAAGGCAAAA < 41bp 0.743417804266878 0.474973450400388 0.42333472 0.35914224 prediction 0.486835608533756 Functional Loss - WDR70 ENSG00000082068 CDS Human protein_coding chr5:37605222 chr5:37605224 nonsynonymous SNV 0.976 3 23 hm5C_associated_SNPs_67732 0 0 0 0 1 WDR70 chr5:37605166 3'AG 37605166 Downstream 59bp
chr5 37605225 37605225 1 + G T LUSC 37605222 + 37605202 37605242 41 GCAAAAAAGTGTGTTTAAACCACGGACGATGCAAGGCAAAA GCAAAAAAGTGTGTTTAAACCACTGACGATGCAAGGCAAAA < 41bp 0.743417804266878 0.378376507460677 0.42333472 0.30734962 prediction 0.486835608533756 Functional Loss - WDR70 ENSG00000082068 CDS Human protein_coding chr5:37605222 chr5:37605225 nonsynonymous SNV 0.980 3 24 hm5C_associated_SNPs_67733 0 0 0 0 1 WDR70 chr5:37605166 3'AG 37605166 Downstream 60bp
chr22 30762187 30762187 1 + C T rs113058207 30762185 + 30762165 30762205 41 ATGACCATGTTCCGGGTGACCCCGAGTTCACGCAGCTGTCC ATGACCATGTTCCGGGTGACCCTGAGTTCACGCAGCTGTCC < 41bp 0.809160033037775 0.565748191867634 0.29011965 0.18803075 prediction 0.486823682340283 Functional Loss - CCDC157 ENSG00000187860 CDS Human protein_coding chr22:30762185 chr22:30762187 synonymous SNV . 0 23 hm5C_associated_SNPs_67736 0 0 0 0 1 CCDC157 chr22:30762237 5'GT 30762237 Upstream 51bp
chr19 36245009 36245009 1 + G A STAD 36245006 + 36244986 36245026 41 ACCCGGAGATGCCTGCAGATCCCGCATCCCATCTCCACTGC ACCCGGAGATGCCTGCAGATCCCACATCCCATCTCCACTGC < 41bp 0.755449590832925 0.512049842913352 0.11586669 0.07533339 prediction 0.486799495839147 Functional Loss - LIN37 ENSG00000267796 CDS Human protein_coding chr19:36245006 chr19:36245009 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_67738 0 0 1 0 2 LIN37 chr19:36244918 3'AG 36244918 Downstream 92bp
chr19 36245009 36245009 1 + G A STAD 36245006 + 36244986 36245026 41 ACCCGGAGATGCCTGCAGATCCCGCATCCCATCTCCACTGC ACCCGGAGATGCCTGCAGATCCCACATCCCATCTCCACTGC < 41bp 0.755449590832925 0.512049842913352 0.11586669 0.07533339 prediction 0.486799495839147 Functional Loss - LIN37 ENSG00000267796 CDS Human protein_coding chr19:36245006 chr19:36245009 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_67738 0 0 1 0 2 LIN37 chr19:36245058 5'GT 36245058 Upstream 50bp
chr7 150771788 150771788 1 + G A STAD 150771785 + 150771765 150771805 41 CTGAGCGTTCCCAGTGGATTCTCGGTGACTGCCCCAGAAAA CTGAGCGTTCCCAGTGGATTCTCAGTGACTGCCCCAGAAAA < 41bp 0.751877397317176 0.508489870778082 0.33715612 0.25101602 prediction 0.486775053078188 Functional Loss - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150771785 chr7:150771788 synonymous SNV . 0 24 hm5C_associated_SNPs_67741 0 0 1 0 1 SLC4A2 chr7:150771762 3'AG 150771762 Downstream 27bp
chr9 131446240 131446240 1 + G T rs191311210 131446238 + 131446218 131446258 41 AACCAAGACCACCTCCTGCTCTGGGACCGGAGGAGACATCG AACCAAGACCACCTCCTGCTCTTGGACCGGAGGAGACATCG < 41bp 0.884530577707196 0.641152136876374 0.24021888 0.06842172 prediction 0.486756881661643 Functional Loss - SET ENSG00000119335 CDS Human protein_coding chr9:131446238 chr9:131446240 synonymous SNV . 0 23 hm5C_associated_SNPs_67743 0 0 1 0 1 SET chr9:131446286 5'GT 131446286 Upstream 47bp
chr9 137711978 137711978 1 - T G STAD 137711982 - 137711962 137712002 41 TCACCCGGAGGACCGATGAGCCCGATCAGGCCTGGATGACC TCACCCGGAGGACCGATGAGCCCGCTCAGGCCTGGATGACC < 41bp 0.743376236685402 0.336647019445958 0.1046564 0.1528762 prediction 0.486752473370804 Functional Loss - COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137711982 chr9:137711978 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_67744 0 0 0 0 1 COL5A1 chr9:137712055 3'AG 137712055 Downstream 78bp
chrX 135586563 135586563 1 + C T COAD 135586561 + 135586541 135586581 41 TGAGAGGCGAGCCGGACCATCCCGGATGCGCCATGAGCGAG TGAGAGGCGAGCCGGACCATCCTGGATGCGCCATGAGCGAG < 41bp 0.794312577077595 0.550937023635402 0.17672083 0.20449045 prediction 0.486751106884385 Functional Loss - HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135586561 chrX:135586563 nonsynonymous SNV 0.872 4 23 hm5C_associated_SNPs_67745 0 0 1 0 2 HTATSF1 chrX:135586523 3'AG 135586523 Downstream 41bp
chrX 135586563 135586563 1 + C T COAD 135586561 + 135586541 135586581 41 TGAGAGGCGAGCCGGACCATCCCGGATGCGCCATGAGCGAG TGAGAGGCGAGCCGGACCATCCTGGATGCGCCATGAGCGAG < 41bp 0.794312577077595 0.550937023635402 0.17672083 0.20449045 prediction 0.486751106884385 Functional Loss - HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135586561 chrX:135586563 nonsynonymous SNV 0.872 4 23 hm5C_associated_SNPs_67745 0 0 1 0 2 HTATSF1 chrX:135586622 5'GT 135586622 Upstream 60bp
chr12 105536925 105536925 1 + C T GBM 105536923 + 105536903 105536943 41 AGTACATGTTCAGTGCTTTGCGCGACTGTGTACCTGCTATG AGTACATGTTCAGTGCTTTGCGTGACTGTGTACCTGCTATG < 41bp 0.743365131135622 0.463737066317748 0.114290684 0.16268888 prediction 0.486730262271244 Functional Loss - WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105536923 chr12:105536925 synonymous SNV . 0 23 hm5C_associated_SNPs_67747 0 0 1 0 2 WASHC4 chr12:105536905 3'AG 105536905 Downstream 21bp
chr12 105536925 105536925 1 + C T GBM 105536923 + 105536903 105536943 41 AGTACATGTTCAGTGCTTTGCGCGACTGTGTACCTGCTATG AGTACATGTTCAGTGCTTTGCGTGACTGTGTACCTGCTATG < 41bp 0.743365131135622 0.463737066317748 0.114290684 0.16268888 prediction 0.486730262271244 Functional Loss - WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105536923 chr12:105536925 synonymous SNV . 0 23 hm5C_associated_SNPs_67747 0 0 1 0 2 WASHC4 chr12:105537021 5'GT 105537021 Upstream 97bp
chr12 66704320 66704320 1 + G T STAD 66704318 + 66704298 66704338 41 GGCTATAGAAGTTTTGCTCACAGCACCTACAGGGAAAGCAG GGCTATAGAAGTTTTGCTCACATCACCTACAGGGAAAGCAG < 41bp 0.74336249877238 0.415474043305518 0.36091873 0.06694627 prediction 0.48672499754476 Functional Loss - HELB ENSG00000127311 CDS Human protein_coding chr12:66704318 chr12:66704320 nonsynonymous SNV 0.076 4 23 hm5C_associated_SNPs_67748 0 0 1 0 1 HELB chr12:66704388 5'GT 66704388 Upstream 69bp
chr22 46611214 46611214 1 + C T COAD 46611212 + 46611192 46611232 41 GGCTATCATTACGGAGTCCACGCGTGTGAAGGCTGCAAGGT GGCTATCATTACGGAGTCCACGTGTGTGAAGGCTGCAAGGT < 41bp 0.77897309366845 0.535611640970198 0.18534866 0.12076026 prediction 0.486722905396504 Functional Loss - PPARA ENSG00000186951 CDS Human protein_coding chr22:46611212 chr22:46611214 nonsynonymous SNV 0.918 5 23 hm5C_associated_SNPs_67749 0 0 1 0 1 PPARA chr22:46611230 5'GT 46611230 Upstream 17bp
chr4 69342097 69342097 1 + C T LUAD 69342095 + 69342075 69342115 41 TGCAGTGGGATGGGAGTCATCGCTGTGGAGCAACCTTAATT TGCAGTGGGATGGGAGTCATCGTTGTGGAGCAACCTTAATT < 41bp 0.806826762160433 0.563467202292859 0.12977666 0.12677434 prediction 0.486719119735149 Functional Loss - TMPRSS11E ENSG00000087128 CDS Human protein_coding chr4:69342095 chr4:69342097 synonymous SNV . 0 23 hm5C_associated_SNPs_67752 0 0 0 0 1 TMPRSS11E chr4:69342156 5'GT 69342156 Upstream 60bp
chr12 54943488 54943488 1 + G C rs568127468 54943484 + 54943464 54943504 41 GGCAGCGGGAGAGGAGGAGCCGCAGGAGCTGCAGCTCTGCC GGCAGCGGGAGAGGAGGAGCCGCACGAGCTGCAGCTCTGCC < 41bp 0.7433537637193 0.467808327450971 0.8008839 0.29121453 prediction 0.486707527438599 Functional Loss - PDE1B ENSG00000123360 UTR5 Human protein_coding chr12:54943484 chr12:54943488 . . 0 25 hm5C_associated_SNPs_67754 0 0 0 0 1 PDE1B chr12:54943556 5'GT 54943556 Upstream 69bp
chr9 139973510 139973510 1 + C T UCEC 139973508 + 139973488 139973528 41 GCCGGGGAGTGGAGTTTGTGCACGTGTACTGTGTGGACAAC GCCGGGGAGTGGAGTTTGTGCATGTGTACTGTGTGGACAAC < 41bp 0.797873716181291 0.554528944850464 0.37508076 0.28304428 prediction 0.486689542661653 Functional Loss - UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139973508 chr9:139973510 synonymous SNV . 0 23 hm5C_associated_SNPs_67758 0 0 1 0 2 UAP1L1 chr9:139973428 3'AG 139973428 Downstream 83bp
chr9 139973510 139973510 1 + C T UCEC 139973508 + 139973488 139973528 41 GCCGGGGAGTGGAGTTTGTGCACGTGTACTGTGTGGACAAC GCCGGGGAGTGGAGTTTGTGCATGTGTACTGTGTGGACAAC < 41bp 0.797873716181291 0.554528944850464 0.37508076 0.28304428 prediction 0.486689542661653 Functional Loss - UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139973508 chr9:139973510 synonymous SNV . 0 23 hm5C_associated_SNPs_67758 0 0 1 0 2 UAP1L1 chr9:139973600 5'GT 139973600 Upstream 91bp
chr3 137743508 137743508 1 + A T rs17204075 137743504 + 137743484 137743524 41 AACATGCTGGTGACTAACTTCTGGATGTCCACAGCTAACAT AACATGCTGGTGACTAACTTCTGGTTGTCCACAGCTAACAT < 41bp 0.876738375568773 0.63339399016735 0.20984551 0.11372265 prediction 0.486688770802846 Functional Loss - CLDN18 ENSG00000066405 CDS Human protein_coding chr3:137743504 chr3:137743508 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_67759 0 0 0 0 2 CLDN18 chr3:137743449 3'AG 137743449 Downstream 60bp
chr3 137743508 137743508 1 + A T rs17204075 137743504 + 137743484 137743524 41 AACATGCTGGTGACTAACTTCTGGATGTCCACAGCTAACAT AACATGCTGGTGACTAACTTCTGGTTGTCCACAGCTAACAT < 41bp 0.876738375568773 0.63339399016735 0.20984551 0.11372265 prediction 0.486688770802846 Functional Loss - CLDN18 ENSG00000066405 CDS Human protein_coding chr3:137743504 chr3:137743508 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_67759 0 0 0 0 2 CLDN18 chr3:137743566 5'GT 137743566 Upstream 59bp
chr2 220098866 220098866 1 + C T LUAD 220098864 + 220098844 220098884 41 TTTTATGGCAGAAGAAGACCCTCGGGAAGCAGTCAGACTGC TTTTATGGCAGAAGAAGACCCTTGGGAAGCAGTCAGACTGC < 41bp 0.798875443812189 0.555537670059919 0.2553916 0.18228677 prediction 0.486675547504539 Functional Loss - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220098864 chr2:220098866 nonsynonymous SNV 0.680 2 23 hm5C_associated_SNPs_67761 0 0 1 0 1 ANKZF1 chr2:220098855 3'AG 220098855 Downstream 12bp
chr20 31607460 31607460 1 + C T SKCM 31607458 + 31607438 31607478 41 GTGCCACACCTGTGGCCATGCTCCACACAAACAACGCCACC GTGCCACACCTGTGGCCATGCTTCACACAAACAACGCCACC < 41bp 0.743334820969999 0.470395152219394 0.44349623 0.20204088 prediction 0.486669641939998 Functional Loss - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31607458 chr20:31607460 synonymous SNV . 0 23 hm5C_associated_SNPs_67763 0 0 1 0 2 BPIFB2 chr20:31607386 3'AG 31607386 Downstream 75bp
chr20 31607460 31607460 1 + C T SKCM 31607458 + 31607438 31607478 41 GTGCCACACCTGTGGCCATGCTCCACACAAACAACGCCACC GTGCCACACCTGTGGCCATGCTTCACACAAACAACGCCACC < 41bp 0.743334820969999 0.470395152219394 0.44349623 0.20204088 prediction 0.486669641939998 Functional Loss - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31607458 chr20:31607460 synonymous SNV . 0 23 hm5C_associated_SNPs_67763 0 0 1 0 2 BPIFB2 chr20:31607556 5'GT 31607556 Upstream 97bp
chr3 196386659 196386659 1 + G A STAD 196386656 + 196386636 196386676 41 CTGACTGCCGAGGGCAGAGCCTCGCTTCGGTGCCCAGCAGC CTGACTGCCGAGGGCAGAGCCTCACTTCGGTGCCCAGCAGC < 41bp 0.753913626773097 0.510579165560218 0.3776428 0.16631287 prediction 0.486668922425759 Functional Loss - NRROS ENSG00000174004 CDS Human protein_coding chr3:196386656 chr3:196386659 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_67764 0 0 0 0 1 NRROS chr3:196386623 3'AG 196386623 Downstream 37bp
chr12 122399996 122399996 1 + G T COAD 122399994 + 122399974 122400014 41 GTCTGGTACCCACCACTCACCAGGGAACTCTTCCTGCTTAT GTCTGGTACCCACCACTCACCATGGAACTCTTCCTGCTTAT < 41bp 0.743318099564228 0.3793109422453 0.93246967 0.3338284 prediction 0.486636199128456 Functional Loss - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122399994 chr12:122399996 nonsynonymous SNV 0.989 1 23 hm5C_associated_SNPs_67767 0 0 0 0 1 WDR66 chr12:122400068 5'GT 122400068 Upstream 73bp
chr12 122399997 122399997 1 + G A SKCM 122399994 + 122399974 122400014 41 GTCTGGTACCCACCACTCACCAGGGAACTCTTCCTGCTTAT GTCTGGTACCCACCACTCACCAGAGAACTCTTCCTGCTTAT < 41bp 0.743318099564228 0.496159720675766 0.93246967 0.90127796 prediction 0.486636199128456 Functional Loss - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122399994 chr12:122399997 synonymous SNV . 0 24 hm5C_associated_SNPs_67768 0 0 0 0 1 WDR66 chr12:122400068 5'GT 122400068 Upstream 72bp
chr22 30824464 30824464 1 + C T HNSC 30824462 + 30824442 30824482 41 CCTACAGGTCGGTGGATTTCCTCCTGGACTCCAGCCTGCGC CCTACAGGTCGGTGGATTTCCTTCTGGACTCCAGCCTGCGC < 41bp 0.743311644121124 0.475748910467033 0.070598334 0.07490933 prediction 0.486623288242247 Functional Loss - MTFP1 ENSG00000242114;ENSG00000249590 CDS Human other chr22:30824462 chr22:30824464 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_67771 0 0 1 0 1 MTFP1 chr22:30824449 3'AG 30824449 Downstream 16bp
chr12 11905408 11905408 1 + C T BRCA 11905406 + 11905386 11905426 41 GGAACGAATTTCATATACACCTCCAGAGAGCCCAGTGCCGA GGAACGAATTTCATATACACCTTCAGAGAGCCCAGTGCCGA < 41bp 0.743309752010906 0.451007767037289 0.91144836 0.028207451 prediction 0.486619504021812 Functional Loss - ETV6 ENSG00000139083 CDS Human protein_coding chr12:11905406 chr12:11905408 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_67772 0 0 0 0 1 ETV6 chr12:11905384 3'AG 11905384 Downstream 25bp
chr15 45439823 45439823 1 + G T UCEC 45439820 + 45439800 45439840 41 GCAATGGCTACCTGTCCTTCCGAGAGTTCCTGGACATCCTG GCAATGGCTACCTGTCCTTCCGATAGTTCCTGGACATCCTG < 41bp 0.743307917592854 0.352138248585209 0.8732927 0.140214 prediction 0.486615835185708 Functional Loss - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45439820 chr15:45439823 stopgain 0.998 1 24 hm5C_associated_SNPs_67773 0 0 0 0 1 DUOX1 chr15:45439856 5'GT 45439856 Upstream 34bp
chr17 47294040 47294040 1 + C T LUAD 47294038 + 47294018 47294058 41 CGCCCTGCGGCAGGTGGAAGCCCGTGTAAGCACGCTGGGCC CGCCCTGCGGCAGGTGGAAGCCTGTGTAAGCACGCTGGGCC < 41bp 0.743303295777713 0.496243211096527 0.8325408 0.8420861 prediction 0.486606591555426 Functional Loss - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47294038 chr17:47294040 nonsynonymous SNV 0.166 3 23 hm5C_associated_SNPs_67774 0 0 0 0 2 ABI3 chr17:47294042 5'GT 47294042 Upstream 3bp
chr17 47294040 47294040 1 + C T LUAD 47294038 + 47294018 47294058 41 CGCCCTGCGGCAGGTGGAAGCCCGTGTAAGCACGCTGGGCC CGCCCTGCGGCAGGTGGAAGCCTGTGTAAGCACGCTGGGCC < 41bp 0.743303295777713 0.496243211096527 0.8325408 0.8420861 prediction 0.486606591555426 Functional Loss - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47294038 chr17:47294040 nonsynonymous SNV 0.166 3 23 hm5C_associated_SNPs_67774 0 0 0 0 2 ABI3 chr17:47294060 5'GT 47294060 Upstream 21bp
chr19 17599743 17599743 1 + C T LUSC 17599741 + 17599721 17599761 41 GACTGCCTGCCCCTGTACCACTCGGCAGGTACTACGGCCTG GACTGCCTGCCCCTGTACCACTTGGCAGGTACTACGGCCTG < 41bp 0.745252275409769 0.501949172547142 0.0569427 0.08114746 prediction 0.486606205725255 Functional Loss - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17599741 chr19:17599743 nonsynonymous SNV 0.876 2 23 hm5C_associated_SNPs_67775 0 0 0 0 2 SLC27A1 chr19:17599657 3'AG 17599657 Downstream 87bp
chr19 17599743 17599743 1 + C T LUSC 17599741 + 17599721 17599761 41 GACTGCCTGCCCCTGTACCACTCGGCAGGTACTACGGCCTG GACTGCCTGCCCCTGTACCACTTGGCAGGTACTACGGCCTG < 41bp 0.745252275409769 0.501949172547142 0.0569427 0.08114746 prediction 0.486606205725255 Functional Loss - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17599741 chr19:17599743 nonsynonymous SNV 0.876 2 23 hm5C_associated_SNPs_67775 0 0 0 0 2 SLC27A1 chr19:17599748 5'GT 17599748 Upstream 6bp
chr1 227920610 227920610 1 - G A CESC 227920612 - 227920592 227920632 41 GAGGTCAGCGAGTGGAGGGACTCCATGCCCGACTGGCACCA GAGGTCAGCGAGTGGAGGGACTTCATGCCCGACTGGCACCA < 41bp 0.835695196924367 0.592394199894897 0.9393783 0.39925984 prediction 0.486601994058939 Functional Loss - JMJD4 ENSG00000081692 CDS Human protein_coding chr1:227920612 chr1:227920610 nonsynonymous SNV 0.991 2 23 hm5C_associated_SNPs_67777 0 0 1 0 1 JMJD4 chr1:227920582 5'GT 227920582 Upstream 29bp
chr7 86813798 86813798 1 + G T UCEC 86813796 + 86813776 86813816 41 AGCCAGGTGACATAGTCACACAGGGTGTGTCTTGGGCAGCT AGCCAGGTGACATAGTCACACATGGTGTGTCTTGGGCAGCT < 41bp 0.884969411123682 0.6416690391382 0.88375294 0.30417633 prediction 0.486600743970963 Functional Loss - DMTF1 ENSG00000135164 CDS Human protein_coding chr7:86813796 chr7:86813798 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_67778 0 0 1 0 1 DMTF1 chr7:86813713 3'AG 86813713 Downstream 86bp
chr16 4384864 4384864 1 + C T CESC 4384862 + 4384842 4384882 41 CCTTCCAGTTCTTCCTGCCCCTCGGCTCCGGGGGGGCCCTG CCTTCCAGTTCTTCCTGCCCCTTGGCTCCGGGGGGGCCCTG < 41bp 0.816424286383356 0.57312605226158 0.050170034 0.051408768 prediction 0.486596468243552 Functional Loss - GLIS2 ENSG00000126603 CDS Human protein_coding chr16:4384862 chr16:4384864 synonymous SNV . 0 23 hm5C_associated_SNPs_67781 0 0 1 0 1 GLIS2 chr16:4384802 3'AG 4384802 Downstream 63bp
chr5 118969690 118969690 1 + C T SKCM 118969688 + 118969668 118969708 41 ACATCGAGACAGCCCCCAGCCTCAATCACCCCTGGCCCAGG ACATCGAGACAGCCCCCAGCCTTAATCACCCCTGGCCCAGG < 41bp 0.816275660788129 0.572978732270079 0.18308556 0.014332294 prediction 0.486593857036099 Functional Loss - FAM170A ENSG00000164334 CDS Human protein_coding chr5:118969688 chr5:118969690 stopgain 0.003 0 23 hm5C_associated_SNPs_67782 0 0 0 0 1 FAM170A chr5:118969655 3'AG 118969655 Downstream 36bp
chr10 18823074 18823074 1 + C T READ 18823072 + 18823052 18823092 41 TTGCAGTTGGTGGTCCTTGACGCGGATACAATTAATCATCC TTGCAGTTGGTGGTCCTTGACGTGGATACAATTAATCATCC < 41bp 0.761318062681378 0.518023157042014 0.48564506 0.48054886 prediction 0.486589811278728 Functional Loss - CACNB2 ENSG00000165995 CDS Human protein_coding chr10:18823072 chr10:18823074 nonsynonymous SNV 0.480 4 23 hm5C_associated_SNPs_67783 0 0 1 0 2 CACNB2 chr10:18823005 3'AG 18823005 Downstream 70bp
chr10 18823074 18823074 1 + C T READ 18823072 + 18823052 18823092 41 TTGCAGTTGGTGGTCCTTGACGCGGATACAATTAATCATCC TTGCAGTTGGTGGTCCTTGACGTGGATACAATTAATCATCC < 41bp 0.761318062681378 0.518023157042014 0.48564506 0.48054886 prediction 0.486589811278728 Functional Loss - CACNB2 ENSG00000165995 CDS Human protein_coding chr10:18823072 chr10:18823074 nonsynonymous SNV 0.480 4 23 hm5C_associated_SNPs_67783 0 0 1 0 2 CACNB2 chr10:18823156 5'GT 18823156 Upstream 83bp
chr16 2867450 2867450 1 + G C rs71386691 2867446 + 2867426 2867466 41 CGCAGAGTCGCAGGAGGCGGCGCCGTTATCAGGTAGGGCGC CGCAGAGTCGCAGGAGGCGGCGCCCTTATCAGGTAGGGCGC < 41bp 0.82152959121015 0.578244690756317 0.8825513 0.8063768 prediction 0.486569800907666 Functional Loss - PRSS21 ENSG00000007038 CDS Human protein_coding chr16:2867446 chr16:2867450 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_67786 0 0 1 0 1 PRSS21 chr16:2867457 5'GT 2867457 Upstream 8bp
chr17 76490156 76490156 1 + C T COAD 76490154 + 76490134 76490174 41 CCCGCATTCCCGACGATGAACACGGAGTGGCGGACCTGCAG CCCGCATTCCCGACGATGAACATGGAGTGGCGGACCTGCAG < 41bp 0.743284270665974 0.488513398467038 0.42152306 0.6019427 prediction 0.486568541331948 Functional Loss - DNAH17 ENSG00000187775 CDS Human processed_transcript chr17:76490154 chr17:76490156 nonsynonymous SNV 0.901 0 23 hm5C_associated_SNPs_67787 0 0 0 0 1 DNAH17-AS1 chr17:76490096 3'AG 76490096 Downstream 61bp
chr17 37816701 37816701 1 + T C STAD 37816700 + 37816680 37816720 41 CCAGACCTTCCTGCCCTGTCCTGCGGAGCTCGTGTACCAGG CCAGACCTTCCTGCCCTGTCCCGCGGAGCTCGTGTACCAGG < 41bp 0.756617068572962 0.513334483262535 0.6004451 0.8547129 prediction 0.486565170620854 Functional Loss - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37816700 chr17:37816701 synonymous SNV . 0 22 hm5C_associated_SNPs_67788 0 0 1 0 2 STARD3 chr17:37816684 3'AG 37816684 Downstream 18bp
chr17 37816701 37816701 1 + T C STAD 37816700 + 37816680 37816720 41 CCAGACCTTCCTGCCCTGTCCTGCGGAGCTCGTGTACCAGG CCAGACCTTCCTGCCCTGTCCCGCGGAGCTCGTGTACCAGG < 41bp 0.756617068572962 0.513334483262535 0.6004451 0.8547129 prediction 0.486565170620854 Functional Loss - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37816700 chr17:37816701 synonymous SNV . 0 22 hm5C_associated_SNPs_67788 0 0 1 0 2 STARD3 chr17:37816779 5'GT 37816779 Upstream 79bp
chr2 209309541 209309541 1 + T C UCEC 209309540 + 209309520 209309560 41 TCCTGGTGGAAGGTCTCTACCTGCATAATCTCATCTTTGTG TCCTGGTGGAAGGTCTCTACCCGCATAATCTCATCTTTGTG < 41bp 0.7732455137923 0.529971177675492 0.36774957 0.39122516 prediction 0.486548672233616 Functional Loss - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209309540 chr2:209309541 nonsynonymous SNV 0.917 3 22 hm5C_associated_SNPs_67791 0 0 0 0 2 PTH2R chr2:209309459 3'AG 209309459 Downstream 83bp
chr2 209309541 209309541 1 + T C UCEC 209309540 + 209309520 209309560 41 TCCTGGTGGAAGGTCTCTACCTGCATAATCTCATCTTTGTG TCCTGGTGGAAGGTCTCTACCCGCATAATCTCATCTTTGTG < 41bp 0.7732455137923 0.529971177675492 0.36774957 0.39122516 prediction 0.486548672233616 Functional Loss - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209309540 chr2:209309541 nonsynonymous SNV 0.917 3 22 hm5C_associated_SNPs_67791 0 0 0 0 2 PTH2R chr2:209309612 5'GT 209309612 Upstream 72bp
chr17 74076504 74076504 1 + G A rs8066946 74076501 + 74076481 74076521 41 AGCTTCTACGCTCTCAGCAACACGGGTGCTGACAGGGCAGG AGCTTCTACGCTCTCAGCAACACAGGTGCTGACAGGGCAGG < 41bp 0.75603319171586 0.512760939967536 0.37929803 0.38795146 prediction 0.486544503496647 Functional Loss - ZACN ENSG00000186919 CDS Human protein_coding chr17:74076501 chr17:74076504 synonymous SNV . 0 24 hm5C_associated_SNPs_67792 0 0 0 0 1 ZACN chr17:74076505 5'GT 74076505 Upstream 2bp
chr22 35811868 35811868 1 + C T LUAD 35811866 + 35811846 35811886 41 AGCGCAGCTGGACTGACAGCCTCGGTGATGAGGGACCCTTC AGCGCAGCTGGACTGACAGCCTTGGTGATGAGGGACCCTTC < 41bp 0.74326134721951 0.46220652153524 0.19794187 0.17657295 prediction 0.48652269443902 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35811866 chr22:35811868 nonsynonymous SNV 0.951 4 23 hm5C_associated_SNPs_67796 0 0 1 1 2 MCM5 chr22:35811822 3'AG 35811822 Downstream 47bp
chr22 35811868 35811868 1 + C T LUAD 35811866 + 35811846 35811886 41 AGCGCAGCTGGACTGACAGCCTCGGTGATGAGGGACCCTTC AGCGCAGCTGGACTGACAGCCTTGGTGATGAGGGACCCTTC < 41bp 0.74326134721951 0.46220652153524 0.19794187 0.17657295 prediction 0.48652269443902 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35811866 chr22:35811868 nonsynonymous SNV 0.951 4 23 hm5C_associated_SNPs_67796 0 0 1 1 2 MCM5 chr22:35811965 5'GT 35811965 Upstream 98bp
chr1 78591634 78591634 1 + G T UCEC 78591631 + 78591611 78591651 41 TTGAGTTGTACATGGGAATTCGAGATATTGATTTAGGTAAG TTGAGTTGTACATGGGAATTCGATATATTGATTTAGGTAAG < 41bp 0.743240151166004 0.39049077676845 0.2764392 0.16251868 prediction 0.486480302332007 Functional Loss - GIPC2 ENSG00000137960 CDS Human protein_coding chr1:78591631 chr1:78591634 nonsynonymous SNV 0.977 5 24 hm5C_associated_SNPs_67800 0 0 0 0 2 GIPC2 chr1:78591565 3'AG 78591565 Downstream 70bp
chr1 78591634 78591634 1 + G T UCEC 78591631 + 78591611 78591651 41 TTGAGTTGTACATGGGAATTCGAGATATTGATTTAGGTAAG TTGAGTTGTACATGGGAATTCGATATATTGATTTAGGTAAG < 41bp 0.743240151166004 0.39049077676845 0.2764392 0.16251868 prediction 0.486480302332007 Functional Loss - GIPC2 ENSG00000137960 CDS Human protein_coding chr1:78591631 chr1:78591634 nonsynonymous SNV 0.977 5 24 hm5C_associated_SNPs_67800 0 0 0 0 2 GIPC2 chr1:78591646 5'GT 78591646 Upstream 13bp
chr20 20232387 20232387 1 + T C LUAD 20232386 + 20232366 20232406 41 CCCTACGACCACCTCATCCTCTGCACCGGGCAGCAGTACCA CCCTACGACCACCTCATCCTCCGCACCGGGCAGCAGTACCA < 41bp 0.743239787034134 0.4876596248949 0.11906594 0.062218487 prediction 0.486479574068267 Functional Loss - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20232386 chr20:20232387 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_67801 0 0 0 0 1 CFAP61 chr20:20232407 5'GT 20232407 Upstream 21bp
chr3 14922115 14922115 1 + G A SKCM 14922112 + 14922092 14922132 41 CCAGAGCCCTTGTCATCGCACAGGAACTGCTATCTTCAGAG CCAGAGCCCTTGTCATCGCACAGAAACTGCTATCTTCAGAG < 41bp 0.758490492477681 0.515257186944935 0.6524852 0.33765036 prediction 0.486466611065492 Functional Loss - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14922112 chr3:14922115 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_67802 0 0 0 0 1 FGD5 chr3:14922079 3'AG 14922079 Downstream 37bp
chr16 81301520 81301520 1 + G T UCEC 81301517 + 81301497 81301537 41 CTTTTTGTCTTGCTAGAGGGCAAGAAGCAGGGGAAGAGCCC CTTTTTGTCTTGCTAGAGGGCAATAAGCAGGGGAAGAGCCC < 41bp 0.743233056079916 0.354431493088129 0.27256066 0.29384923 prediction 0.486466112159833 Functional Loss - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81301517 chr16:81301520 nonsynonymous SNV 0.074 1 24 hm5C_associated_SNPs_67803 0 0 0 0 1 BCO1 chr16:81301513 3'AG 81301513 Downstream 8bp
chr19 19609528 19609528 1 + C T UCEC 19609526 + 19609506 19609546 41 GGTGCAGAACCTACTGGAGACACAAGGTGAGTGGCCTGGAC GGTGCAGAACCTACTGGAGACATAAGGTGAGTGGCCTGGAC < 41bp 0.74323062311506 0.471015830089735 0.42517444 0.6799733 prediction 0.486461246230119 Functional Loss - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19609526 chr19:19609528 stopgain 0.963 1 23 hm5C_associated_SNPs_67805 0 0 1 0 1 GATAD2A chr19:19609531 5'GT 19609531 Upstream 4bp
chr2 66667041 66667041 1 + C T COAD 66667039 + 66667019 66667059 41 AATTAGCTACTTGTACCCCCCGCGAGCCGGGGGTGGCGGGC AATTAGCTACTTGTACCCCCCGTGAGCCGGGGGTGGCGGGC < 41bp 0.834263278561722 0.591036499623563 0.6850753 0.16313249 prediction 0.486453557876317 Functional Loss - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66667039 chr2:66667041 synonymous SNV . 0 23 hm5C_associated_SNPs_67807 0 0 1 0 2 MEIS1 chr2:66666975 3'AG 66666975 Downstream 67bp
chr2 66667041 66667041 1 + C T COAD 66667039 + 66667019 66667059 41 AATTAGCTACTTGTACCCCCCGCGAGCCGGGGGTGGCGGGC AATTAGCTACTTGTACCCCCCGTGAGCCGGGGGTGGCGGGC < 41bp 0.834263278561722 0.591036499623563 0.6850753 0.16313249 prediction 0.486453557876317 Functional Loss - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66667039 chr2:66667041 synonymous SNV . 0 23 hm5C_associated_SNPs_67807 0 0 1 0 2 MEIS1 chr2:66667116 5'GT 66667116 Upstream 76bp
chr16 67235910 67235910 1 + G A STAD 67235907 + 67235887 67235927 41 ACCCAGCACAGGACCTGGAGCGCGTGCCCCCCGGTCTGCTG ACCCAGCACAGGACCTGGAGCGCATGCCCCCCGGTCTGCTG < 41bp 0.750229059618733 0.507005973977415 0.22982433 0.1089167 prediction 0.486446171282635 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67235907 chr16:67235910 nonsynonymous SNV 0.911 2 24 hm5C_associated_SNPs_67808 0 0 0 0 2 ELMO3 chr16:67235880 3'AG 67235880 Downstream 31bp
chr16 67235910 67235910 1 + G A STAD 67235907 + 67235887 67235927 41 ACCCAGCACAGGACCTGGAGCGCGTGCCCCCCGGTCTGCTG ACCCAGCACAGGACCTGGAGCGCATGCCCCCCGGTCTGCTG < 41bp 0.750229059618733 0.507005973977415 0.22982433 0.1089167 prediction 0.486446171282635 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67235907 chr16:67235910 nonsynonymous SNV 0.911 2 24 hm5C_associated_SNPs_67808 0 0 0 0 2 ELMO3 chr16:67235981 5'GT 67235981 Upstream 72bp
chr1 160390898 160390898 1 + C T UCEC 160390896 + 160390876 160390916 41 GGCTGTGATTGCAGCGGCAGCTCGGAGGCGGGACAACAGTC GGCTGTGATTGCAGCGGCAGCTTGGAGGCGGGACAACAGTC < 41bp 0.743218308899477 0.460089720958943 0.83752775 0.8234022 prediction 0.486436617798954 Functional Loss - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160390896 chr1:160390898 nonsynonymous SNV 0.725 5 23 hm5C_associated_SNPs_67809 0 0 1 0 2 VANGL2 chr1:160390842 3'AG 160390842 Downstream 57bp
chr1 160390898 160390898 1 + C T UCEC 160390896 + 160390876 160390916 41 GGCTGTGATTGCAGCGGCAGCTCGGAGGCGGGACAACAGTC GGCTGTGATTGCAGCGGCAGCTTGGAGGCGGGACAACAGTC < 41bp 0.743218308899477 0.460089720958943 0.83752775 0.8234022 prediction 0.486436617798954 Functional Loss - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160390896 chr1:160390898 nonsynonymous SNV 0.725 5 23 hm5C_associated_SNPs_67809 0 0 1 0 2 VANGL2 chr1:160390977 5'GT 160390977 Upstream 80bp
chr22 50649076 50649076 1 + G A THYM 50649073 + 50649053 50649093 41 GTGGCAGGTACGACCCCGACCACGTGTGCAATGCCTCCGAC GTGGCAGGTACGACCCCGACCACATGTGCAATGCCTCCGAC < 41bp 0.754851705040366 0.511638458289972 0.4728973 0.69116354 prediction 0.486426493500788 Functional Loss - SELENOO ENSG00000073169 CDS Human protein_coding chr22:50649073 chr22:50649076 unknown 0.868 4 24 hm5C_associated_SNPs_67810 0 0 1 0 1 SELENOO chr22:50649060 3'AG 50649060 Downstream 17bp
chr22 44328959 44328959 1 + G A UCEC 44328956 + 44328936 44328976 41 TCTCGAGAGCTTTTGTCCCCCCGGATCTCAAGGTGAGTTGG TCTCGAGAGCTTTTGTCCCCCCGAATCTCAAGGTGAGTTGG < 41bp 0.749706129605459 0.506497139463457 0.35035372 0.07670891 prediction 0.486417980284004 Functional Loss - PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44328956 chr22:44328959 nonsynonymous SNV 0.011 0 24 hm5C_associated_SNPs_67811 0 0 1 0 1 PNPLA3 chr22:44328967 5'GT 44328967 Upstream 9bp
chr20 31672750 31672750 1 + G T LIHC 31672747 + 31672727 31672767 41 GGGTGTCCGTGCGGCTCCTGCCCGGCGTGGGTGTCTACCTG GGGTGTCCGTGCGGCTCCTGCCCTGCGTGGGTGTCTACCTG < 41bp 0.743208097716135 0.334890071698329 0.3064828 0.020353287 prediction 0.48641619543227 Functional Loss - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31672747 chr20:31672750 nonsynonymous SNV 0.976 3 24 hm5C_associated_SNPs_67812 0 0 0 0 2 BPIFB4 chr20:31672698 3'AG 31672698 Downstream 53bp
chr20 31672750 31672750 1 + G T LIHC 31672747 + 31672727 31672767 41 GGGTGTCCGTGCGGCTCCTGCCCGGCGTGGGTGTCTACCTG GGGTGTCCGTGCGGCTCCTGCCCTGCGTGGGTGTCTACCTG < 41bp 0.743208097716135 0.334890071698329 0.3064828 0.020353287 prediction 0.48641619543227 Functional Loss - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31672747 chr20:31672750 nonsynonymous SNV 0.976 3 24 hm5C_associated_SNPs_67812 0 0 0 0 2 BPIFB4 chr20:31672802 5'GT 31672802 Upstream 53bp
chr19 51920476 51920476 1 + C T UCS 51920474 + 51920454 51920494 41 GCAGTTCCCCTTGGCGGGATCCCCAGTGAGCTGGAATCGGC GCAGTTCCCCTTGGCGGGATCCTCAGTGAGCTGGAATCGGC < 41bp 0.759953446130619 0.516745823066926 0.20915377 0.2589128 prediction 0.486415246127386 Functional Loss - SIGLEC10 ENSG00000142512 CDS Human protein_coding chr19:51920474 chr19:51920476 nonsynonymous SNV 0.002 4 23 hm5C_associated_SNPs_67813 0 0 0 0 1 LOC100129083;SIGLEC10 chr19:51920386 3'AG 51920386 Downstream 91bp
chr19 3278082 3278082 1 + G A UCEC 3278079 + 3278059 3278099 41 CGGAGGCGCAGGCGGCCATCCACGCCTTGCATGGGAGCCAG CGGAGGCGCAGGCGGCCATCCACACCTTGCATGGGAGCCAG < 41bp 0.75418110131322 0.51097437815527 0.40591434 0.20680445 prediction 0.486413446315899 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3278079 chr19:3278082 nonsynonymous SNV 0.982 1 24 hm5C_associated_SNPs_67815 0 0 0 1 2 CELF5 chr19:3278029 3'AG 3278029 Downstream 54bp
chr19 3278082 3278082 1 + G A UCEC 3278079 + 3278059 3278099 41 CGGAGGCGCAGGCGGCCATCCACGCCTTGCATGGGAGCCAG CGGAGGCGCAGGCGGCCATCCACACCTTGCATGGGAGCCAG < 41bp 0.75418110131322 0.51097437815527 0.40591434 0.20680445 prediction 0.486413446315899 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3278079 chr19:3278082 nonsynonymous SNV 0.982 1 24 hm5C_associated_SNPs_67815 0 0 0 1 2 CELF5 chr19:3278108 5'GT 3278108 Upstream 27bp
chr1 156347250 156347250 1 + G A COAD 156347247 + 156347227 156347267 41 AGGGCTTTCTCCACTCCTTCCACGGTGGCCACATCCATGTT AGGGCTTTCTCCACTCCTTCCACAGTGGCCACATCCATGTT < 41bp 0.767955905824405 0.524749510175739 0.2507808 0.11565259 prediction 0.486412791297332 Functional Loss - RHBG ENSG00000132677 CDS Human protein_coding chr1:156347247 chr1:156347250 nonsynonymous SNV 0.027 0 24 hm5C_associated_SNPs_67816 0 0 1 0 1 RHBG chr1:156347278 5'GT 156347278 Upstream 29bp
chr16 67199689 67199689 1 + G A LUSC 67199686 + 67199666 67199706 41 AGGCCGGAGCGCGACCACGTCGAGTTCCAGCACCCGAGCTT AGGCCGGAGCGCGACCACGTCGAATTCCAGCACCCGAGCTT < 41bp 0.752267452688803 0.509061197185409 0.44282913 0.23156476 prediction 0.486412511006788 Functional Loss - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67199686 chr16:67199689 synonymous SNV . 0 24 hm5C_associated_SNPs_67817 0 0 1 0 2 HSF4 chr16:67199622 3'AG 67199622 Downstream 68bp
chr16 67199689 67199689 1 + G A LUSC 67199686 + 67199666 67199706 41 AGGCCGGAGCGCGACCACGTCGAGTTCCAGCACCCGAGCTT AGGCCGGAGCGCGACCACGTCGAATTCCAGCACCCGAGCTT < 41bp 0.752267452688803 0.509061197185409 0.44282913 0.23156476 prediction 0.486412511006788 Functional Loss - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67199686 chr16:67199689 synonymous SNV . 0 24 hm5C_associated_SNPs_67817 0 0 1 0 2 HSF4 chr16:67199749 5'GT 67199749 Upstream 61bp
chr19 16236305 16236305 1 + C T COAD 16236303 + 16236283 16236323 41 ATCATGCTGGTCTACGACATCACCAACGAGAAGTCCTTCGA ATCATGCTGGTCTACGACATCATCAACGAGAAGTCCTTCGA < 41bp 0.841132498350921 0.597930044242389 0.025150448 0.015885621 prediction 0.486404908217065 Functional Loss - RAB8A ENSG00000167461 CDS Human protein_coding chr19:16236303 chr19:16236305 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_67818 0 0 1 0 2 RAB8A chr19:16236280 3'AG 16236280 Downstream 26bp
chr19 16236305 16236305 1 + C T COAD 16236303 + 16236283 16236323 41 ATCATGCTGGTCTACGACATCACCAACGAGAAGTCCTTCGA ATCATGCTGGTCTACGACATCATCAACGAGAAGTCCTTCGA < 41bp 0.841132498350921 0.597930044242389 0.025150448 0.015885621 prediction 0.486404908217065 Functional Loss - RAB8A ENSG00000167461 CDS Human protein_coding chr19:16236303 chr19:16236305 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_67818 0 0 1 0 2 RAB8A chr19:16236357 5'GT 16236357 Upstream 53bp
chr19 3382208 3382208 1 + G A LUSC 3382205 + 3382185 3382225 41 TTGGCGTGGCCGTCAAGGAGCTGGACCTCTACCTGGCCTAC TTGGCGTGGCCGTCAAGGAGCTGAACCTCTACCTGGCCTAC < 41bp 0.760954002195349 0.517755225851032 0.38886485 0.7029394 prediction 0.486397552688634 Functional Loss - NFIC ENSG00000141905 CDS Human protein_coding chr19:3382205 chr19:3382208 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_67820 0 0 1 0 1 NFIC chr19:3382241 5'GT 3382241 Upstream 34bp
chr1 111825688 111825688 1 + C T SKCM 111825686 + 111825666 111825706 41 GCTGCAGTAGCTGCTGGCATCTCCAACATCCAGTCTGGCTA GCTGCAGTAGCTGCTGGCATCTTCAACATCCAGTCTGGCTA < 41bp 0.772439959752052 0.529246364398673 0.9706768 0.52848375 prediction 0.486387190706758 Functional Loss - CHIAP2 ENSG00000203878 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:111825686 chr1:111825688 . . 0 23 hm5C_associated_SNPs_67822 0 0 0 0 2 CHIAP2 chr1:111825603 3'AG 111825603 Downstream 86bp
chr1 111825688 111825688 1 + C T SKCM 111825686 + 111825666 111825706 41 GCTGCAGTAGCTGCTGGCATCTCCAACATCCAGTCTGGCTA GCTGCAGTAGCTGCTGGCATCTTCAACATCCAGTCTGGCTA < 41bp 0.772439959752052 0.529246364398673 0.9706768 0.52848375 prediction 0.486387190706758 Functional Loss - CHIAP2 ENSG00000203878 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:111825686 chr1:111825688 . . 0 23 hm5C_associated_SNPs_67822 0 0 0 0 2 CHIAP2 chr1:111825727 5'GT 111825727 Upstream 40bp
chr17 16330184 16330184 1 + T C STAD 16330183 + 16330163 16330203 41 TTGCCTACCATCAGCCTACCCTGAAGAAGGCAAGGGCGTGA TTGCCTACCATCAGCCTACCCCGAAGAAGGCAAGGGCGTGA < 41bp 0.761402365931042 0.518216840675604 0.0758104 0.13175282 prediction 0.486371050510877 Functional Loss - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16330183 chr17:16330184 nonsynonymous SNV 0.972 1 22 hm5C_associated_SNPs_67826 0 0 0 0 1 TRPV2 chr17:16330177 3'AG 16330177 Downstream 8bp
chr17 32963055 32963055 1 + C T READ 32963053 + 32963033 32963073 41 CTCCGCTGACGGAGGCTGTGCTCGGGGAGACGCTGCTGACG CTCCGCTGACGGAGGCTGTGCTTGGGGAGACGCTGCTGACG < 41bp 0.78809361465538 0.544913636808711 0.3465216 0.6702381 prediction 0.486359955693337 Functional Loss - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32963053 chr17:32963055 synonymous SNV . 0 23 hm5C_associated_SNPs_67827 0 0 0 0 1 TMEM132E chr17:32963026 3'AG 32963026 Downstream 30bp
chr1 148932815 148932815 1 + C T SKCM 148932813 + 148932793 148932833 41 GCCAGACCCCCAAGCTAGCCCGCCAGGCCTCCATAGAGCTG GCCAGACCCCCAAGCTAGCCCGTCAGGCCTCCATAGAGCTG < 41bp 0.778257105201936 0.535082761184892 0.010473877 0.005887568 prediction 0.486348688034089 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932813 chr1:148932815 . . 0 23 hm5C_associated_SNPs_67832 0 0 1 0 1 LOC645166 chr1:148932786 3'AG 148932786 Downstream 30bp
chr8 11643509 11643509 1 + G C LUSC 11643505 + 11643485 11643525 41 GAATGAAGCCTTGTACAGAGCTGGGATCCATCCCCTTTCTC GAATGAAGCCTTGTACAGAGCTGGCATCCATCCCCTTTCTC < 41bp 0.834899864696458 0.5917283209435 0.20804545 0.04553026 prediction 0.486343087505915 Functional Loss - NEIL2 ENSG00000154328 CDS Human protein_coding chr8:11643505 chr8:11643509 synonymous SNV . 0 25 hm5C_associated_SNPs_67834 0 0 0 0 1 NEIL2 chr8:11643472 3'AG 11643472 Downstream 38bp
chr2 204103851 204103851 1 + C T UCEC 204103849 + 204103829 204103869 41 TGGTGGGAGCCGTGCTCTACCTCTATCCGGTGAGCGCCGTC TGGTGGGAGCCGTGCTCTACCTTTATCCGGTGAGCGCCGTC < 41bp 0.743161523942143 0.490112919181439 0.9283242 0.093260914 prediction 0.486323047884286 Functional Loss - CYP20A1 ENSG00000119004 CDS Human protein_coding chr2:204103849 chr2:204103851 synonymous SNV . 0 23 hm5C_associated_SNPs_67837 0 0 1 0 1 CYP20A1 chr2:204103857 5'GT 204103857 Upstream 7bp
chrX 153048473 153048473 1 + G A UCEC 153048470 + 153048450 153048490 41 ATCCACACGGACATCAAGCCCGAGAACATCTTGCTGTGTGT ATCCACACGGACATCAAGCCCGAAAACATCTTGCTGTGTGT < 41bp 0.743156627328497 0.499869981064649 0.266397 0.066678435 prediction 0.486313254656993 Functional Loss - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153048470 chrX:153048473 synonymous SNV . 0 24 hm5C_associated_SNPs_67838 0 0 0 0 1 SRPK3 chrX:153048408 3'AG 153048408 Downstream 66bp
chr5 148685923 148685923 1 + G T KIRC 148685921 + 148685901 148685941 41 GGCTACTATGAGGACGCAGACAGCAGCTACCCTGCAACCAG GGCTACTATGAGGACGCAGACATCAGCTACCCTGCAACCAG < 41bp 0.896387397217622 0.653233624652403 0.32099736 0.24359164 prediction 0.486307545130438 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148685921 chr5:148685923 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_67839 0 0 0 0 2 AFAP1L1 chr5:148685869 3'AG 148685869 Downstream 55bp
chr5 148685923 148685923 1 + G T KIRC 148685921 + 148685901 148685941 41 GGCTACTATGAGGACGCAGACAGCAGCTACCCTGCAACCAG GGCTACTATGAGGACGCAGACATCAGCTACCCTGCAACCAG < 41bp 0.896387397217622 0.653233624652403 0.32099736 0.24359164 prediction 0.486307545130438 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148685921 chr5:148685923 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_67839 0 0 0 0 2 AFAP1L1 chr5:148685967 5'GT 148685967 Upstream 45bp
chr6 158502193 158502193 1 + C T rs145408972 158502191 + 158502171 158502211 41 TCAGGAAGTCGATGTGGGTGCTCGGGAGAGGGTTTTCCAGG TCAGGAAGTCGATGTGGGTGCTTGGGAGAGGGTTTTCCAGG < 41bp 0.743152810308745 0.465738179928091 0.42182672 0.6655251 prediction 0.48630562061749 Functional Loss - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158502191 chr6:158502193 nonsynonymous SNV 0.836 4 23 hm5C_associated_SNPs_67840 0 0 1 0 1 SYNJ2 chr6:158502141 3'AG 158502141 Downstream 53bp
chr9 139701456 139701456 1 + C T rs150880294 139701454 + 139701434 139701474 41 GTGAGGGACACCCTGGAGTCCTCGACTCTGATGGAGAAGTA GTGAGGGACACCCTGGAGTCCTTGACTCTGATGGAGAAGTA < 41bp 0.828459650866046 0.585314424046551 0.2223891 0.1646752 prediction 0.486290453638989 Functional Loss - CCDC183 ENSG00000213213 CDS Human protein_coding chr9:139701454 chr9:139701456 nonsynonymous SNV 0.300 1 23 hm5C_associated_SNPs_67843 0 0 1 0 2 CCDC183 chr9:139701422 3'AG 139701422 Downstream 35bp
chr9 139701456 139701456 1 + C T rs150880294 139701454 + 139701434 139701474 41 GTGAGGGACACCCTGGAGTCCTCGACTCTGATGGAGAAGTA GTGAGGGACACCCTGGAGTCCTTGACTCTGATGGAGAAGTA < 41bp 0.828459650866046 0.585314424046551 0.2223891 0.1646752 prediction 0.486290453638989 Functional Loss - CCDC183 ENSG00000213213 CDS Human protein_coding chr9:139701454 chr9:139701456 nonsynonymous SNV 0.300 1 23 hm5C_associated_SNPs_67843 0 0 1 0 2 CCDC183 chr9:139701518 5'GT 139701518 Upstream 63bp
chr1 79002132 79002132 1 + G T LUAD 79002130 + 79002110 79002150 41 GAATAAATGGAAATCATTCTCTGGAAACCTGTGAAACAACA GAATAAATGGAAATCATTCTCTTGAAACCTGTGAAACAACA < 41bp 0.864376658113151 0.62123406320008 0.34798226 0.25266942 prediction 0.486285189826142 Functional Loss - PTGFR ENSG00000122420 CDS Human protein_coding chr1:79002130 chr1:79002132 synonymous SNV . 0 23 hm5C_associated_SNPs_67846 0 0 0 0 1 PTGFR chr1:79002091 3'AG 79002091 Downstream 42bp
chr7 137776584 137776584 1 + T C rs187887082 137776583 + 137776563 137776603 41 GGACACTCAGGGTCCTCCAGCTAGATTATGTGGATCTTTAC GGACACTCAGGGTCCTCCAGCCAGATTATGTGGATCTTTAC < 41bp 0.771757527460263 0.52861791987312 0.11368409 0.79664063 prediction 0.486279215174287 Functional Loss - AKR1D1 ENSG00000122787 CDS Human protein_coding chr7:137776583 chr7:137776584 nonsynonymous SNV 0.017 4 22 hm5C_associated_SNPs_67847 0 0 1 0 1 AKR1D1 chr7:137776630 5'GT 137776630 Upstream 47bp
chr1 168549377 168549377 1 + G T CESC 168549374 + 168549354 168549394 41 CGACTGCCGGTTAGCAGAATCAAGACCTACACCATCACGGA CGACTGCCGGTTAGCAGAATCAATACCTACACCATCACGGA < 41bp 0.921392052448868 0.678253098586146 0.5446172 0.09254143 prediction 0.486277907725444 Functional Loss - XCL1 ENSG00000143184 CDS Human protein_coding chr1:168549374 chr1:168549377 nonsynonymous SNV 0.960 2 24 hm5C_associated_SNPs_67848 0 0 1 0 2 XCL1 chr1:168549301 3'AG 168549301 Downstream 77bp
chr1 168549377 168549377 1 + G T CESC 168549374 + 168549354 168549394 41 CGACTGCCGGTTAGCAGAATCAAGACCTACACCATCACGGA CGACTGCCGGTTAGCAGAATCAATACCTACACCATCACGGA < 41bp 0.921392052448868 0.678253098586146 0.5446172 0.09254143 prediction 0.486277907725444 Functional Loss - XCL1 ENSG00000143184 CDS Human protein_coding chr1:168549374 chr1:168549377 nonsynonymous SNV 0.960 2 24 hm5C_associated_SNPs_67848 0 0 1 0 2 XCL1 chr1:168549415 5'GT 168549415 Upstream 39bp
chr6 32147811 32147811 1 + G T SARC 32147809 + 32147789 32147829 41 TTCCAGCCATTTGGTGATACCGGGGGCTTCCACTTCTCATT TTCCAGCCATTTGGTGATACCGTGGGCTTCCACTTCTCATT < 41bp 0.872094371848819 0.628964829647317 0.9414874 0.66109735 prediction 0.486259084403003 Functional Loss - RNF5 ENSG00000204308 CDS Human protein_coding chr6:32147809 chr6:32147811 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_67851 0 0 0 0 2 RNF5 chr6:32147786 3'AG 32147786 Downstream 26bp
chr6 32147811 32147811 1 + G T SARC 32147809 + 32147789 32147829 41 TTCCAGCCATTTGGTGATACCGGGGGCTTCCACTTCTCATT TTCCAGCCATTTGGTGATACCGTGGGCTTCCACTTCTCATT < 41bp 0.872094371848819 0.628964829647317 0.9414874 0.66109735 prediction 0.486259084403003 Functional Loss - RNF5 ENSG00000204308 CDS Human protein_coding chr6:32147809 chr6:32147811 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_67851 0 0 0 0 2 RNF5 chr6:32147903 5'GT 32147903 Upstream 93bp
chr1 200008793 200008793 1 + G C STAD 200008789 + 200008769 200008809 41 GTGCTGCCCGTGTCCAGGTGCTGGGCTTCCGGACCGACACG GTGCTGCCCGTGTCCAGGTGCTGGCCTTCCGGACCGACACG < 41bp 0.846783586454857 0.603654069482742 0.54420036 0.37747687 prediction 0.486259033944229 Functional Loss - NR5A2 ENSG00000116833 CDS Human protein_coding chr1:200008789 chr1:200008793 synonymous SNV . 0 25 hm5C_associated_SNPs_67852 0 0 0 0 1 NR5A2 chr1:200008786 3'AG 200008786 Downstream 8bp
chr19 54656617 54656617 1 + C T UCEC 54656615 + 54656595 54656635 41 CTCTCACAGGCAGTACCTCCCCCGGAACCCCTGTCCGACGC CTCTCACAGGCAGTACCTCCCCTGGAACCCCTGTCCGACGC < 41bp 0.743128140048986 0.478435856791939 0.16110736 0.06611478 prediction 0.486256280097971 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54656615 chr19:54656617 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_67853 0 0 0 0 2 CNOT3 chr19:54656604 3'AG 54656604 Downstream 14bp
chr19 54656617 54656617 1 + C T UCEC 54656615 + 54656595 54656635 41 CTCTCACAGGCAGTACCTCCCCCGGAACCCCTGTCCGACGC CTCTCACAGGCAGTACCTCCCCTGGAACCCCTGTCCGACGC < 41bp 0.743128140048986 0.478435856791939 0.16110736 0.06611478 prediction 0.486256280097971 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54656615 chr19:54656617 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_67853 0 0 0 0 2 CNOT3 chr19:54656608 3'AG 54656608 Downstream 10bp
chr19 42260606 42260606 1 + G A rs115207242 42260603 + 42260583 42260623 41 AGGGGAAGGAGGTTCTTCTACTCGCCCACAACCTGCCCCAG AGGGGAAGGAGGTTCTTCTACTCACCCACAACCTGCCCCAG < 41bp 0.761779172774431 0.518653980455814 0.058894515 0.0659197 prediction 0.486250384637234 Functional Loss - CEACAM6 ENSG00000086548;ENSG00000267881 CDS Human other chr19:42260603 chr19:42260606 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_67854 0 0 0 0 1 CEACAM6 chr19:42260508 3'AG 42260508 Downstream 99bp
chr20 39741481 39741481 1 + G T UCEC 39741478 + 39741458 39741498 41 CGGCTGAAAAAATGTGTGGACAAGATCCGGAACCAGTATCG CGGCTGAAAAAATGTGTGGACAATATCCGGAACCAGTATCG < 41bp 0.743124916378477 0.350736601986948 0.3905088 0.15546077 prediction 0.486249832756953 Functional Loss - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39741478 chr20:39741481 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_67855 0 0 1 0 1 TOP1 chr20:39741565 5'GT 39741565 Upstream 85bp
chr13 20235872 20235872 1 + C T PRAD 20235870 + 20235850 20235890 41 ATGACACTGGTGATGCTTGCCGCCGCCGGAGGGCAGGACGA ATGACACTGGTGATGCTTGCCGTCGCCGGAGGGCAGGACGA < 41bp 0.743121849276394 0.456536483595453 0.49502376 0.39605784 prediction 0.486243698552787 Functional Loss - MPHOSPH8 ENSG00000196199 CDS Human protein_coding chr13:20235870 chr13:20235872 nonsynonymous SNV 0.364 4 23 hm5C_associated_SNPs_67858 0 0 1 0 1 MPHOSPH8 chr13:20235838 3'AG 20235838 Downstream 35bp
chr15 45457024 45457024 1 + G T UCEC 45457021 + 45457001 45457041 41 TGTGGCCCCCCTGGCATGACCAAGAATGTGGAAAAGGCCTG TGTGGCCCCCCTGGCATGACCAATAATGTGGAAAAGGCCTG < 41bp 0.743120649119022 0.352180967520655 0.161899 0.08564377 prediction 0.486241298238043 Functional Loss - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45457021 chr15:45457024 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_67859 0 0 0 0 1 DUOX1 chr15:45456977 3'AG 45456977 Downstream 48bp
chr12 101777001 101777001 1 + C T UCEC 101776999 + 101776979 101777019 41 AGGAAGAGGTGAAGGAAGAGCTCGGCAGGCCGGCCACGCTG AGGAAGAGGTGAAGGAAGAGCTTGGCAGGCCGGCCACGCTG < 41bp 0.743116585535672 0.490327188574464 0.5813707 0.5645957 prediction 0.486233171071344 Functional Loss - UTP20 ENSG00000120800 CDS Human protein_coding chr12:101776999 chr12:101777001 synonymous SNV . 0 23 hm5C_associated_SNPs_67860 0 0 1 0 1 UTP20 chr12:101777091 5'GT 101777091 Upstream 91bp
chr11 61250166 61250166 1 + G A SKCM 61250163 + 61250143 61250183 41 CATTTCCAGTCTGTGGCCAGCCAGAGCTACCGCCCCCTGGA CATTTCCAGTCTGTGGCCAGCCAAAGCTACCGCCCCCTGGA < 41bp 0.758057271524303 0.514943313934984 0.87540257 0.2170685 prediction 0.486227915178639 Functional Loss - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61250163 chr11:61250166 synonymous SNV . 0 24 hm5C_associated_SNPs_67862 0 0 0 0 1 PPP1R32 chr11:61250127 3'AG 61250127 Downstream 40bp
chr12 48877106 48877106 1 + G T UCEC 48877104 + 48877084 48877124 41 CACAGCATCCCTGCCAGGATCAGGAACAAAAGGTAGAAATG CACAGCATCCCTGCCAGGATCATGAACAAAAGGTAGAAATG < 41bp 0.892075379417117 0.648966525198061 0.9289036 0.1655685 prediction 0.486217708438113 Functional Loss - C12orf54 ENSG00000177627 CDS Human protein_coding chr12:48877104 chr12:48877106 nonsynonymous SNV 0.018 1 23 hm5C_associated_SNPs_67866 0 0 0 0 1 C12orf54 chr12:48877144 5'GT 48877144 Upstream 39bp
chr19 11759282 11759282 1 + G T UCEC 11759280 + 11759260 11759300 41 GATGTGATGTGGGAAATCATCAGGAACCTGATGTCTGTAGG GATGTGATGTGGGAAATCATCATGAACCTGATGTCTGTAGG < 41bp 0.873632641543538 0.630525439453396 0.8863965 0.40376952 prediction 0.486214404180284 Functional Loss - ZNF627;ZNF833P ENSG00000197332;ENSG00000267500 ncRNA_exonic Human other chr19:11759280 chr19:11759282 . . 0 23 hm5C_associated_SNPs_67868 0 0 1 0 1 ZNF627;ZNF833P chr19:11759299 5'GT 11759299 Upstream 18bp
chr11 113848644 113848644 1 + G A SKCM 113848641 + 113848621 113848661 41 ATTGTCTATGCCATCCTCAACGTGGTGAGGCTCAGCCCCGA ATTGTCTATGCCATCCTCAACGTAGTGAGGCTCAGCCCCGA < 41bp 0.744983693391151 0.501879740380148 0.3925165 0.19455218 prediction 0.486207906022006 Functional Loss - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113848641 chr11:113848644 synonymous SNV . 0 24 hm5C_associated_SNPs_67870 0 0 0 0 1 HTR3A chr11:113848644 5'GT 113848644 Upstream 1bp
chrX 128926357 128926357 1 + C T SKCM 128926355 + 128926335 128926375 41 TGGCAGCTTCGGGGAGGAACCACCTGCCCCCCAGTACACAG TGGCAGCTTCGGGGAGGAACCATCTGCCCCCCAGTACACAG < 41bp 0.803160118183245 0.560069759886883 0.5030423 0.33219987 prediction 0.486180716592726 Functional Loss - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128926355 chrX:128926357 nonsynonymous SNV 0.075 0 23 hm5C_associated_SNPs_67873 0 0 0 0 2 SASH3 chrX:128926304 3'AG 128926304 Downstream 54bp
chrX 128926357 128926357 1 + C T SKCM 128926355 + 128926335 128926375 41 TGGCAGCTTCGGGGAGGAACCACCTGCCCCCCAGTACACAG TGGCAGCTTCGGGGAGGAACCATCTGCCCCCCAGTACACAG < 41bp 0.803160118183245 0.560069759886883 0.5030423 0.33219987 prediction 0.486180716592726 Functional Loss - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128926355 chrX:128926357 nonsynonymous SNV 0.075 0 23 hm5C_associated_SNPs_67873 0 0 0 0 2 SASH3 chrX:128926452 5'GT 128926452 Upstream 96bp
chr6 43010826 43010826 1 + C T LGG 43010824 + 43010804 43010844 41 CTGCCCACCTGCTTCTCCACCACGGCCCGCCAACAGCGCGT CTGCCCACCTGCTTCTCCACCATGGCCCGCCAACAGCGCGT < 41bp 0.748876367847876 0.505791925467795 0.15523332 0.096036404 prediction 0.486168884760162 Functional Loss - CUL7 ENSG00000044090 CDS Human protein_coding chr6:43010824 chr6:43010826 nonsynonymous SNV 0.580 5 23 hm5C_associated_SNPs_67874 0 0 0 0 1 CUL7 chr6:43010796 3'AG 43010796 Downstream 31bp
chr19 2799757 2799757 1 + C T rs143179443 2799755 + 2799735 2799775 41 AACAAGAACCTGAACGAGGACACGACCTTCCTGCCCTTCAC AACAAGAACCTGAACGAGGACATGACCTTCCTGCCCTTCAC < 41bp 0.820064691458652 0.57698385494219 0.11662364 0.14166126 prediction 0.486161673032924 Functional Loss - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2799755 chr19:2799757 nonsynonymous SNV 0.980 1 23 hm5C_associated_SNPs_67878 0 0 1 0 2 THOP1 chr19:2799687 3'AG 2799687 Downstream 71bp
chr19 2799757 2799757 1 + C T rs143179443 2799755 + 2799735 2799775 41 AACAAGAACCTGAACGAGGACACGACCTTCCTGCCCTTCAC AACAAGAACCTGAACGAGGACATGACCTTCCTGCCCTTCAC < 41bp 0.820064691458652 0.57698385494219 0.11662364 0.14166126 prediction 0.486161673032924 Functional Loss - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2799755 chr19:2799757 nonsynonymous SNV 0.980 1 23 hm5C_associated_SNPs_67878 0 0 1 0 2 THOP1 chr19:2799789 5'GT 2799789 Upstream 33bp
chr3 42243952 42243952 1 + G C SKCM 42243951 + 42243931 42243971 41 CGATGAGCGGAGTAAGAAGCCGGGGACGCCGGGCACCCCAG CGATGAGCGGAGTAAGAAGCCCGGGACGCCGGGCACCCCAG < 41bp 0.85901071221757 0.615932343290747 0.93686795 0.883163 prediction 0.486156737853647 Functional Loss - TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42243951 chr3:42243952 synonymous SNV . 0 22 hm5C_associated_SNPs_67879 0 0 1 0 1 TRAK1 chr3:42243928 3'AG 42243928 Downstream 25bp
chr11 64021948 64021948 1 + G T UCEC 64021946 + 64021926 64021966 41 CCCAATGGCTTCTTCTTGTACTGGACGGGCCCCAACATGGT CCCAATGGCTTCTTCTTGTACTTGACGGGCCCCAACATGGT < 41bp 0.743077796972762 0.412999944611962 0.18582433 0.08361769 prediction 0.486155593945525 Functional Loss - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64021946 chr11:64021948 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_67880 0 0 1 0 2 PLCB3 chr11:64021887 3'AG 64021887 Downstream 62bp
chr11 64021948 64021948 1 + G T UCEC 64021946 + 64021926 64021966 41 CCCAATGGCTTCTTCTTGTACTGGACGGGCCCCAACATGGT CCCAATGGCTTCTTCTTGTACTTGACGGGCCCCAACATGGT < 41bp 0.743077796972762 0.412999944611962 0.18582433 0.08361769 prediction 0.486155593945525 Functional Loss - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64021946 chr11:64021948 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_67880 0 0 1 0 2 PLCB3 chr11:64021964 5'GT 64021964 Upstream 17bp
chrX 48433977 48433977 1 + G T SARC 48433975 + 48433955 48433995 41 TTGTCAAGGACCGGGAGACTCAGCGGTCCAGGGGTTTTGGT TTGTCAAGGACCGGGAGACTCATCGGTCCAGGGGTTTTGGT < 41bp 0.904506601581173 0.661428891412567 0.93275595 0.34322143 prediction 0.486155420337212 Functional Loss - RBM3 ENSG00000102317 CDS Human protein_coding chrX:48433975 chrX:48433977 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_67881 0 0 1 0 2 RBM3 chrX:48433949 3'AG 48433949 Downstream 29bp
chrX 48433977 48433977 1 + G T SARC 48433975 + 48433955 48433995 41 TTGTCAAGGACCGGGAGACTCAGCGGTCCAGGGGTTTTGGT TTGTCAAGGACCGGGAGACTCATCGGTCCAGGGGTTTTGGT < 41bp 0.904506601581173 0.661428891412567 0.93275595 0.34322143 prediction 0.486155420337212 Functional Loss - RBM3 ENSG00000102317 CDS Human protein_coding chrX:48433975 chrX:48433977 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_67881 0 0 1 0 2 RBM3 chrX:48434055 5'GT 48434055 Upstream 79bp
chr15 64710752 64710752 1 + A C LUSC 64710751 + 64710731 64710771 41 TCTGTGTAGTGGGTTGACCACACAGGTGCAGCCTCACAGAA TCTGTGTAGTGGGTTGACCACCCAGGTGCAGCCTCACAGAA < 41bp 0.74307169238068 0.483487545290635 0.16817576 0.14938849 prediction 0.48614338476136 Functional Loss - TRIP4 ENSG00000103671 CDS Human protein_coding chr15:64710751 chr15:64710752 nonsynonymous SNV 0.178 0 22 hm5C_associated_SNPs_67882 0 0 0 0 1 TRIP4 chr15:64710740 3'AG 64710740 Downstream 13bp
chr20 42089159 42089159 1 + C T SKCM 42089157 + 42089137 42089177 41 TTGTTTTTCTCCTAATAGGTCTCGATCTAGAAGACGGTCAC TTGTTTTTCTCCTAATAGGTCTTGATCTAGAAGACGGTCAC < 41bp 0.743069153631805 0.450172169349521 0.100836664 0.0762929 prediction 0.486138307263611 Functional Loss - SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089157 chr20:42089159 stopgain 0.985 1 23 hm5C_associated_SNPs_67884 0 0 1 0 2 SRSF6 chr20:42089155 3'AG 42089155 Downstream 5bp
chr20 42089159 42089159 1 + C T SKCM 42089157 + 42089137 42089177 41 TTGTTTTTCTCCTAATAGGTCTCGATCTAGAAGACGGTCAC TTGTTTTTCTCCTAATAGGTCTTGATCTAGAAGACGGTCAC < 41bp 0.743069153631805 0.450172169349521 0.100836664 0.0762929 prediction 0.486138307263611 Functional Loss - SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089157 chr20:42089159 stopgain 0.985 1 23 hm5C_associated_SNPs_67884 0 0 1 0 2 SRSF6 chr20:42089238 5'GT 42089238 Upstream 80bp
chr22 40803483 40803483 1 + C T UCEC 40803481 + 40803461 40803501 41 CGAGAACTACGTGGCGTGCTCACGCAGCCACCGGCGCCGAG CGAGAACTACGTGGCGTGCTCATGCAGCCACCGGCGCCGAG < 41bp 0.74306697402031 0.47744665272899 0.71826875 0.5431172 prediction 0.486133948040621 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40803481 chr22:40803483 nonsynonymous SNV 0.939 4 23 hm5C_associated_SNPs_67885 0 0 0 0 2 SGSM3 chr22:40803417 3'AG 40803417 Downstream 67bp
chr22 40803483 40803483 1 + C T UCEC 40803481 + 40803461 40803501 41 CGAGAACTACGTGGCGTGCTCACGCAGCCACCGGCGCCGAG CGAGAACTACGTGGCGTGCTCATGCAGCCACCGGCGCCGAG < 41bp 0.74306697402031 0.47744665272899 0.71826875 0.5431172 prediction 0.486133948040621 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40803481 chr22:40803483 nonsynonymous SNV 0.939 4 23 hm5C_associated_SNPs_67885 0 0 0 0 2 SGSM3 chr22:40803572 5'GT 40803572 Upstream 90bp
chr19 14150599 14150599 1 + G A SKCM 14150596 + 14150576 14150616 41 GCCCCCCGGCTGGGCCCTGACGTGGACTTTTCCGAGGATGA GCCCCCCGGCTGGGCCCTGACGTAGACTTTTCCGAGGATGA < 41bp 0.743065185981513 0.495666015736384 0.3727706 0.22083515 prediction 0.486130371963027 Functional Loss - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14150596 chr19:14150599 synonymous SNV . 0 24 hm5C_associated_SNPs_67886 0 0 0 0 1 IL27RA chr19:14150565 3'AG 14150565 Downstream 35bp
chr1 29611311 29611311 1 + G T UCEC 29611308 + 29611288 29611328 41 CGGAGGAGATGGGGCTTATCCTGGGCATCTGTGCAGGGGGG CGGAGGAGATGGGGCTTATCCTGTGCATCTGTGCAGGGGGG < 41bp 0.91738249473971 0.674326385790554 0.92374736 0.40279 prediction 0.486112217898312 Functional Loss - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29611308 chr1:29611311 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_67890 0 0 1 0 1 PTPRU chr1:29611243 3'AG 29611243 Downstream 69bp
chr19 36273546 36273546 1 + C T UCEC 36273544 + 36273524 36273564 41 AGGAGCGTCTGGTGCGGGTGCACGATGTCATCCAGCAGCTG AGGAGCGTCTGGTGCGGGTGCATGATGTCATCCAGCAGCTG < 41bp 0.798787845038633 0.555748450838457 0.3113591 0.38152993 prediction 0.486078788400351 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36273544 chr19:36273546 synonymous SNV . 0 23 hm5C_associated_SNPs_67899 0 0 1 0 1 ARHGAP33 chr19:36273581 5'GT 36273581 Upstream 36bp
chr16 30974857 30974857 1 + G A rs141357385 30974854 + 30974834 30974874 41 CTGAGTGAGAAGTTCCAAGGCTCGGGTGCAGCCACTGAGAC CTGAGTGAGAAGTTCCAAGGCTCAGGTGCAGCCACTGAGAC < 41bp 0.743031694816531 0.498809512357937 0.13600734 0.110163 prediction 0.486063389633063 Functional Loss - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30974854 chr16:30974857 synonymous SNV . 0 24 hm5C_associated_SNPs_67902 0 0 1 0 1 SETD1A chr16:30974875 5'GT 30974875 Upstream 19bp
chr9 34657108 34657108 1 + G A UCEC 34657105 + 34657085 34657125 41 TCTTGCACTTGGAGTCCCAGCCAGATCAGCGGTTTACCCAC TCTTGCACTTGGAGTCCCAGCCAAATCAGCGGTTTACCCAC < 41bp 0.743018947346811 0.495638549520104 0.29715908 0.2777785 prediction 0.486037894693621 Functional Loss - IL11RA ENSG00000137070;ENSG00000258728 CDS Human other chr9:34657105 chr9:34657108 synonymous SNV . 0 24 hm5C_associated_SNPs_67906 0 0 1 0 2 IL11RA chr9:34657032 3'AG 34657032 Downstream 77bp
chr9 34657108 34657108 1 + G A UCEC 34657105 + 34657085 34657125 41 TCTTGCACTTGGAGTCCCAGCCAGATCAGCGGTTTACCCAC TCTTGCACTTGGAGTCCCAGCCAAATCAGCGGTTTACCCAC < 41bp 0.743018947346811 0.495638549520104 0.29715908 0.2777785 prediction 0.486037894693621 Functional Loss - IL11RA ENSG00000137070;ENSG00000258728 CDS Human protein_coding chr9:34657105 chr9:34657108 synonymous SNV . 0 24 hm5C_associated_SNPs_67906 0 0 1 0 2 IL11RA chr9:34657146 5'GT 34657146 Upstream 39bp
chr4 146575224 146575224 1 + C T COAD 146575222 + 146575202 146575242 41 TGGAGACTTGATTGTGCCAGCTCGAAGGATACAAGCGGAAT TGGAGACTTGATTGTGCCAGCTTGAAGGATACAAGCGGAAT < 41bp 0.836460694385369 0.593442920218752 0.32651907 0.35819286 prediction 0.486035548333235 Functional Loss - MMAA ENSG00000151611 CDS Human protein_coding chr4:146575222 chr4:146575224 stopgain 0.999 1 23 hm5C_associated_SNPs_67907 0 0 0 0 1 MMAA chr4:146575295 5'GT 146575295 Upstream 72bp
chr1 100818540 100818540 1 + G T LGG 100818537 + 100818517 100818557 41 GCGGAGTCAGGGGAACTAATCGGGGCTTGTGAGTTCATGAA GCGGAGTCAGGGGAACTAATCGGTGCTTGTGAGTTCATGAA < 41bp 0.908723196210352 0.665716148190153 0.93967175 0.8672093 prediction 0.486014096040399 Functional Loss - CDC14A ENSG00000079335 CDS Human protein_coding chr1:100818537 chr1:100818540 synonymous SNV . 0 24 hm5C_associated_SNPs_67910 0 0 0 0 1 CDC14A chr1:100818559 5'GT 100818559 Upstream 20bp
chr6 158485782 158485782 1 + G A SKCM 158485779 + 158485759 158485799 41 AGAGCCCTGGAAGGGAAGGCCAAGGTAGGGCCCCGCCGAGG AGAGCCCTGGAAGGGAAGGCCAAAGTAGGGCCCCGCCGAGG < 41bp 0.745230986472206 0.502225672232251 0.8418461 0.83348835 prediction 0.486010628479909 Functional Loss - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158485779 chr6:158485782 synonymous SNV . 0 24 hm5C_associated_SNPs_67911 0 0 1 0 1 SYNJ2 chr6:158485782 5'GT 158485782 Upstream 1bp
chr12 4870167 4870167 1 + G A STAD 4870164 + 4870144 4870184 41 GGTCGAGATTTTGCCCTGTTCCCGGATTGCCCACCTAGAGA GGTCGAGATTTTGCCCTGTTCCCAGATTGCCCACCTAGAGA < 41bp 0.742998934029249 0.490844338830829 0.24016514 0.07389617 prediction 0.485997868058497 Functional Loss - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4870164 chr12:4870167 nonsynonymous SNV 0.058 2 24 hm5C_associated_SNPs_67913 0 0 0 0 1 GALNT8 chr12:4870124 3'AG 4870124 Downstream 44bp
chr19 8468396 8468396 1 + C T UCEC 8468394 + 8468374 8468414 41 GACATCAGCGTGCCGCCCACCACGGACGGACAGAAGCCCAA GACATCAGCGTGCCGCCCACCATGGACGGACAGAAGCCCAA < 41bp 0.778607839324783 0.535613634409291 0.34665358 0.287731 prediction 0.485988409830983 Functional Loss - RAB11B ENSG00000185236 CDS Human protein_coding chr19:8468394 chr19:8468396 nonsynonymous SNV 0.974 1 23 hm5C_associated_SNPs_67915 0 0 0 0 1 RAB11B chr19:8468297 3'AG 8468297 Downstream 100bp
chr1 229779403 229779403 1 + G C SARC 229779399 + 229779379 229779419 41 TGGTGATGCAGTGTATTCTCCAGGGACTGGATGTCAGTAAC TGGTGATGCAGTGTATTCTCCAGGCACTGGATGTCAGTAAC < 41bp 0.74298799335383 0.450057105567441 0.9107932 0.80863416 prediction 0.485975986707661 Functional Loss - URB2 ENSG00000135763 CDS Human protein_coding chr1:229779399 chr1:229779403 nonsynonymous SNV 0.068 3 25 hm5C_associated_SNPs_67916 0 0 1 0 1 URB2 chr1:229779440 5'GT 229779440 Upstream 38bp
chr8 24256482 24256482 1 + G A rs7018313 24256479 + 24256459 24256499 41 GTGGTGCCCAGCGCAAGCACCACGTTTGACAACTTCCTGAG GTGGTGCCCAGCGCAAGCACCACATTTGACAACTTCCTGAG < 41bp 0.742987906539225 0.498585275490525 0.3994965 0.1584354 prediction 0.48597581307845 Functional Loss - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24256479 chr8:24256482 synonymous SNV . 0 24 hm5C_associated_SNPs_67917 0 0 0 0 2 ADAMDEC1 chr8:24256387 3'AG 24256387 Downstream 96bp
chr8 24256482 24256482 1 + G A rs7018313 24256479 + 24256459 24256499 41 GTGGTGCCCAGCGCAAGCACCACGTTTGACAACTTCCTGAG GTGGTGCCCAGCGCAAGCACCACATTTGACAACTTCCTGAG < 41bp 0.742987906539225 0.498585275490525 0.3994965 0.1584354 prediction 0.48597581307845 Functional Loss - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24256479 chr8:24256482 synonymous SNV . 0 24 hm5C_associated_SNPs_67917 0 0 0 0 2 ADAMDEC1 chr8:24256553 5'GT 24256553 Upstream 72bp
chr21 45717559 45717559 1 + G T UCEC 45717557 + 45717537 45717577 41 AGCACACCTTCGATGGCATCCTGCAGTGGGCCATCCAGAGC AGCACACCTTCGATGGCATCCTTCAGTGGGCCATCCAGAGC < 41bp 0.871629321686532 0.628648582304779 0.11932734 0.19450745 prediction 0.485961478763507 Functional Loss - AIRE ENSG00000160224 CDS Human protein_coding chr21:45717557 chr21:45717559 synonymous SNV . 0 23 hm5C_associated_SNPs_67919 0 0 0 0 1 AIRE chr21:45717539 3'AG 45717539 Downstream 21bp
chr15 91136915 91136915 1 + G A rs112990767 91136912 + 91136892 91136932 41 GTTCGGGGAACCCGCCATCACGGGCTGGTGGAGAGGCCATC GTTCGGGGAACCCGCCATCACGGACTGGTGGAGAGGCCATC < 41bp 0.7663116692118 0.523333504524138 0.9211576 0.8886306 prediction 0.485956329375324 Functional Loss - CRTC3 ENSG00000140577 CDS Human protein_coding chr15:91136912 chr15:91136915 synonymous SNV . 0 24 hm5C_associated_SNPs_67920 0 0 1 0 1 CRTC3 chr15:91136868 3'AG 91136868 Downstream 48bp
chr6 97053851 97053851 1 + T C LUSC 97053850 + 97053830 97053870 41 GTGTGAGAATTGCCGACAACCTATAGGGACAAAGCCTTTGA GTGTGAGAATTGCCGACAACCCATAGGGACAAAGCCTTTGA < 41bp 0.742975135944253 0.484449533094697 0.07131329 0.031584263 prediction 0.485950271888505 Functional Loss - FHL5 ENSG00000112214 CDS Human protein_coding chr6:97053850 chr6:97053851 synonymous SNV . 0 22 hm5C_associated_SNPs_67921 0 0 0 0 2 FHL5 chr6:97053778 3'AG 97053778 Downstream 74bp
chr6 97053851 97053851 1 + T C LUSC 97053850 + 97053830 97053870 41 GTGTGAGAATTGCCGACAACCTATAGGGACAAAGCCTTTGA GTGTGAGAATTGCCGACAACCCATAGGGACAAAGCCTTTGA < 41bp 0.742975135944253 0.484449533094697 0.07131329 0.031584263 prediction 0.485950271888505 Functional Loss - FHL5 ENSG00000112214 CDS Human protein_coding chr6:97053850 chr6:97053851 synonymous SNV . 0 22 hm5C_associated_SNPs_67921 0 0 0 0 2 FHL5 chr6:97053947 5'GT 97053947 Upstream 97bp
chr7 111846793 111846793 1 + G T LUSC 111846790 + 111846770 111846810 41 TAATGGCTGCTTCCAAGACCCAGGGGGCTGTCGCCCGAATG TAATGGCTGCTTCCAAGACCCAGTGGGCTGTCGCCCGAATG < 41bp 0.917246914738909 0.674275736741195 0.9120259 0.092861444 prediction 0.485942355995428 Functional Loss - ZNF277 ENSG00000198839 CDS Human protein_coding chr7:111846790 chr7:111846793 nonsynonymous SNV 0.035 3 24 hm5C_associated_SNPs_67922 0 0 1 0 1 ZNF277 chr7:111846862 5'GT 111846862 Upstream 70bp
chr17 7468005 7468005 1 + G T LGG 7468003 + 7467983 7468023 41 TCTGGGCCAGAAGGGGAGCGCAGCTTGGCACCCCCTGATGC TCTGGGCCAGAAGGGGAGCGCATCTTGGCACCCCCTGATGC < 41bp 0.742970327427483 0.408461008772724 0.33993223 0.21822134 prediction 0.485940654854966 Functional Loss - SENP3 ENSG00000161956 CDS Human protein_coding chr17:7468003 chr17:7468005 nonsynonymous SNV 0.966 1 23 hm5C_associated_SNPs_67923 0 0 1 0 1 SENP3 chr17:7467942 3'AG 7467942 Downstream 64bp
chr2 198364936 198364936 1 - C G rs113142336 198364940 - 198364920 198364960 41 GCAGGACGCTGACGCGAAGACTCGGAGGCGGAAGAAAAAAG GCAGGACGCTGACGCGAAGACTCGCAGGCGGAAGAAAAAAG < 41bp 0.817421201107984 0.574459147747747 0.07530007 0.028129071 prediction 0.485924106720472 Functional Loss - HSPD1;HSPE1;HSPE1-MOB4 ENSG00000115541;ENSG00000144381 UTR5 Human other chr2:198364940 chr2:198364936 . . 0 25 hm5C_associated_SNPs_67925 0 0 0 0 1 HSPD1;HSPE1;HSPE1-MOB4 chr2:198364884 5'GT 198364884 Upstream 53bp
chr1 153330788 153330788 1 + G C CESC 153330787 + 153330767 153330807 41 GCAAAATGTCGCAGCTGGAACGCAACATAGAGACCATCATC GCAAAATGTCGCAGCTGGAACCCAACATAGAGACCATCATC < 41bp 0.742946903912786 0.436023829030462 0.0669736 0.023342162 prediction 0.485893807825573 Functional Loss - S100A9 ENSG00000163220 CDS Human protein_coding chr1:153330787 chr1:153330788 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_67929 0 0 0 0 1 S100A9 chr1:153330745 3'AG 153330745 Downstream 44bp
chr7 30876318 30876318 1 + C T SKCM 30876316 + 30876296 30876336 41 AAGGGAAGAGGTCATCCTGTCGCCAGTCCCATCAGTGCTCA AAGGGAAGAGGTCATCCTGTCGTCAGTCCCATCAGTGCTCA < 41bp 0.841144610993839 0.598200659723227 0.40337998 0.28311664 prediction 0.485887902541223 Functional Loss - MINDY4 ENSG00000106125 CDS Human protein_coding chr7:30876316 chr7:30876318 nonsynonymous SNV 0.035 1 23 hm5C_associated_SNPs_67930 0 0 1 0 2 MINDY4 chr7:30876274 3'AG 30876274 Downstream 45bp
chr7 30876318 30876318 1 + C T SKCM 30876316 + 30876296 30876336 41 AAGGGAAGAGGTCATCCTGTCGCCAGTCCCATCAGTGCTCA AAGGGAAGAGGTCATCCTGTCGTCAGTCCCATCAGTGCTCA < 41bp 0.841144610993839 0.598200659723227 0.40337998 0.28311664 prediction 0.485887902541223 Functional Loss - MINDY4 ENSG00000106125 CDS Human protein_coding chr7:30876316 chr7:30876318 nonsynonymous SNV 0.035 1 23 hm5C_associated_SNPs_67930 0 0 1 0 2 MINDY4 chr7:30876380 5'GT 30876380 Upstream 63bp
chr3 38162011 38162011 1 + G T UCEC 38162009 + 38161989 38162029 41 CCCAGCTGACCAGACACTGCCTGGGGTGGACATTCAGCAGA CCCAGCTGACCAGACACTGCCTTGGGTGGACATTCAGCAGA < 41bp 0.742943422944648 0.400522585291109 0.9041322 0.28896195 prediction 0.485886845889296 Functional Loss - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38162009 chr3:38162011 nonsynonymous SNV 0.879 4 23 hm5C_associated_SNPs_67931 0 0 0 0 1 DLEC1 chr3:38161939 3'AG 38161939 Downstream 73bp
chr11 15243191 15243191 1 + G A BLCA 15243188 + 15243168 15243208 41 TGGAGGAGATCGTGACAGCCCTCGTCAGTGAGTCACCCTGG TGGAGGAGATCGTGACAGCCCTCATCAGTGAGTCACCCTGG < 41bp 0.752046755460158 0.509106338688775 0.22221935 0.12650126 prediction 0.485880833542766 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15243188 chr11:15243191 nonsynonymous SNV 0.054 0 24 hm5C_associated_SNPs_67933 0 0 0 0 1 INSC chr11:15243194 5'GT 15243194 Upstream 4bp
chr17 52991175 52991175 1 + G T CESC 52991172 + 52991152 52991192 41 TCAAAGAAGTATACCTCGACCTGGTTAAGAAAGGCGTTCAG TCAAAGAAGTATACCTCGACCTGTTTAAGAAAGGCGTTCAG < 41bp 0.742939598467105 0.365397384717522 0.20244008 0.285877 prediction 0.48587919693421 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52991172 chr17:52991175 nonsynonymous SNV 0.981 0 24 hm5C_associated_SNPs_67934 0 0 1 1 1 TOM1L1 chr17:52991234 5'GT 52991234 Upstream 60bp
chr19 13056800 13056800 1 + A C LIHC 13056796 + 13056776 13056816 41 TCACGCTCAAAACGCTGCAGCAGCAGACCTTCAAGATCCGC TCACGCTCAAAACGCTGCAGCAGCCGACCTTCAAGATCCGC < 41bp 0.742933891066171 0.3540136926394 0.27345207 0.2183735 prediction 0.485867782132342 Functional Loss - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13056796 chr19:13056800 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_67937 0 0 1 0 1 RAD23A chr19:13056834 5'GT 13056834 Upstream 35bp
chr19 16910774 16910774 1 + C T COAD 16910772 + 16910752 16910792 41 CCCCCGTGAGCCTGCTGGCCCGCGGCGGGGCTTTGGTGGCA CCCCCGTGAGCCTGCTGGCCCGTGGCGGGGCTTTGGTGGCA < 41bp 0.796500346509397 0.553571088106329 0.38904712 0.30077356 prediction 0.485858516806138 Functional Loss - NWD1 ENSG00000188039 CDS Human protein_coding chr19:16910772 chr19:16910774 synonymous SNV . 0 23 hm5C_associated_SNPs_67938 0 0 0 0 1 NWD1 chr19:16910697 3'AG 16910697 Downstream 78bp
chr20 46251037 46251037 1 + C T STAD 46251035 + 46251015 46251055 41 GGATCCACTGGCCAGTGATTCACGAAAACGCAAATTGCCAT GGATCCACTGGCCAGTGATTCATGAAAACGCAAATTGCCAT < 41bp 0.742928995078988 0.459552392229086 0.54925466 0.4147997 prediction 0.485857990157976 Functional Loss - NCOA3 ENSG00000124151 CDS Human protein_coding chr20:46251035 chr20:46251037 stopgain 0.970 1 23 hm5C_associated_SNPs_67939 0 0 1 0 1 NCOA3 chr20:46250973 3'AG 46250973 Downstream 65bp
chr19 51631700 51631700 1 + G A SKCM 51631697 + 51631677 51631717 41 GTCCTGCAGGAAGAAATCGGCAAGGCCAGCAGCGGGCGTGG GTCCTGCAGGAAGAAATCGGCAAAGCCAGCAGCGGGCGTGG < 41bp 0.74709849397787 0.504175272640928 0.80850375 0.49117267 prediction 0.485846442673884 Functional Loss - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51631697 chr19:51631700 nonsynonymous SNV 0.055 0 24 hm5C_associated_SNPs_67940 0 0 0 0 1 SIGLEC9 chr19:51631767 5'GT 51631767 Upstream 68bp
chr1 11589895 11589895 1 + C T rs201439934 11589893 + 11589873 11589913 41 GGCTTCAACCCCTGCGTGAACACGGGCTGCGGGAAGCCGGC GGCTTCAACCCCTGCGTGAACATGGGCTGCGGGAAGCCGGC < 41bp 0.798765105063784 0.555842452450702 0.78630716 0.80889523 prediction 0.485845305226162 Functional Loss - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11589893 chr1:11589895 nonsynonymous SNV 0.795 1 23 hm5C_associated_SNPs_67941 0 0 0 0 1 DISP3 chr1:11589844 3'AG 11589844 Downstream 52bp
chr21 35254683 35254683 1 + C T COAD 35254681 + 35254661 35254701 41 TTCCTCCTGCTGACTCAGATCACGAAGCCTTTGGGGTCTTC TTCCTCCTGCTGACTCAGATCATGAAGCCTTTGGGGTCTTC < 41bp 0.74721038757063 0.504288639432861 0.33387113 0.3272822 prediction 0.485843496275536 Functional Loss - ITSN1 ENSG00000205726 CDS Human protein_coding chr21:35254681 chr21:35254683 nonsynonymous SNV 0.981 2 23 hm5C_associated_SNPs_67942 0 0 0 0 1 ITSN1 chr21:35254759 5'GT 35254759 Upstream 77bp
chr11 237137 237137 1 + A T LUSC 237133 + 237113 237153 41 TGGCACCGTCTGGAGGAGCTCTACACGAAGAAGTGAGCGCC TGGCACCGTCTGGAGGAGCTCTACTCGAAGAAGTGAGCGCC < 41bp 0.877409768461036 0.634493885170937 0.876593 0.14859158 prediction 0.485831766580198 Functional Loss - PSMD13 ENSG00000185627 CDS Human protein_coding chr11:237133 chr11:237137 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_67943 0 0 1 0 1 PSMD13 chr11:237144 5'GT 237144 Upstream 8bp
chrX 151820175 151820175 1 + G T COAD 151820172 + 151820152 151820192 41 TCGAGGACCTCGGCGCCAGCCTAGGCGACACAGGAGACCCC TCGAGGACCTCGGCGCCAGCCTATGCGACACAGGAGACCCC < 41bp 0.742915615133991 0.345789338982034 0.38783962 0.227353 prediction 0.485831230267982 Functional Loss - GABRQ ENSG00000147402 CDS Human other chrX:151820172 chrX:151820175 nonsynonymous SNV 0.018 3 24 hm5C_associated_SNPs_67944 0 0 0 0 1 GABRQ chrX:151820245 5'GT 151820245 Upstream 71bp
chr1 44441472 44441472 1 + G T HNSC 44441469 + 44441449 44441489 41 CTTTTTCTCCCTCACTGCTGCAGGAGTCTGCTACACCATTT CTTTTTCTCCCTCACTGCTGCAGTAGTCTGCTACACCATTT < 41bp 0.742914436961032 0.474343137346615 0.8886091 0.21355817 prediction 0.485828873922064 Functional Loss - ATP6V0B ENSG00000117410 CDS Human protein_coding chr1:44441469 chr1:44441472 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_67945 0 0 1 0 2 ATP6V0B chr1:44441472 3'AG 44441472 Downstream 1bp
chr1 44441472 44441472 1 + G T HNSC 44441469 + 44441449 44441489 41 CTTTTTCTCCCTCACTGCTGCAGGAGTCTGCTACACCATTT CTTTTTCTCCCTCACTGCTGCAGTAGTCTGCTACACCATTT < 41bp 0.742914436961032 0.474343137346615 0.8886091 0.21355817 prediction 0.485828873922064 Functional Loss - ATP6V0B ENSG00000117410 CDS Human protein_coding chr1:44441469 chr1:44441472 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_67945 0 0 1 0 2 ATP6V0B chr1:44441520 5'GT 44441520 Upstream 49bp
chr17 33319679 33319679 1 + G T LUAD 33319676 + 33319656 33319696 41 AGAGACGAGCTCTGAGCGTCCAGGCCTCGCTGATGACACCT AGAGACGAGCTCTGAGCGTCCAGTCCTCGCTGATGACACCT < 41bp 0.742898636372207 0.341643651369053 0.34709257 0.13783151 prediction 0.485797272744415 Functional Loss - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33319676 chr17:33319679 nonsynonymous SNV 0.990 2 24 hm5C_associated_SNPs_67952 0 0 1 0 1 LIG3 chr17:33319711 5'GT 33319711 Upstream 33bp
chr19 3543916 3543916 1 + A C rs575218949 3543915 + 3543895 3543935 41 GCACCCCAGCGCCCGCCCGGCACCACCCAGAACTACCGGGA GCACCCCAGCGCCCGCCCGGCCCCACCCAGAACTACCGGGA < 41bp 0.765537937194748 0.522639565439898 0.2767338 0.2621231 prediction 0.485796743509701 Functional Loss - C19orf71 ENSG00000183397 CDS Human protein_coding chr19:3543915 chr19:3543916 nonsynonymous SNV 0.011 2 22 hm5C_associated_SNPs_67953 0 0 0 0 1 C19orf71 chr19:3543827 3'AG 3543827 Downstream 90bp
chr4 48988410 48988410 1 + A C rs201034241 48988406 + 48988386 48988426 41 GCTAGGGCAGCGGGCCCGACCCGCACGGCTTTCCTGGAAAG GCTAGGGCAGCGGGCCCGACCCGCCCGGCTTTCCTGGAAAG < 41bp 0.813340778922095 0.570445781906504 0.1469962 0.12964472 prediction 0.485789994031181 Functional Loss - CWH43 ENSG00000109182 UTR5 Human protein_coding chr4:48988406 chr4:48988410 . . 0 25 hm5C_associated_SNPs_67954 0 0 0 0 1 CWH43 chr4:48988489 5'GT 48988489 Upstream 80bp
chr1 238045834 238045834 1 - G A rs34478438 238045836 - 238045816 238045856 41 CCTCCAGGTGTTCCTGTAGACTCGAAAGTTCTGTGGGTGGC CCTCCAGGTGTTCCTGTAGACTTGAAAGTTCTGTGGGTGGC < 41bp 0.822212432630967 0.579323350243948 0.80214715 0.1585306 prediction 0.485778164774039 Functional Loss - ZP4 ENSG00000116996 CDS Human protein_coding chr1:238045836 chr1:238045834 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_67955 0 0 0 0 1 ZP4 chr1:238045849 3'AG 238045849 Downstream 16bp
chr20 37524334 37524334 1 + G A LUSC 37524331 + 37524311 37524351 41 CCACCTGCGGCCACATCAACCTGGTGAAGATCCTCGTTCAG CCACCTGCGGCCACATCAACCTGATGAAGATCCTCGTTCAG < 41bp 0.743482833665922 0.5005979538096 0.38638306 0.26816127 prediction 0.485769759712644 Functional Loss - PPP1R16B ENSG00000101445 CDS Human protein_coding chr20:37524331 chr20:37524334 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_67956 0 0 1 0 1 PPP1R16B chr20:37524353 5'GT 37524353 Upstream 20bp
chr5 23521277 23521277 1 + G T COAD 23521274 + 23521254 23521294 41 AAGTACCTCTGGACAGCACTCAAGACTAAAACTGGGTAAGA AAGTACCTCTGGACAGCACTCAATACTAAAACTGGGTAAGA < 41bp 0.742873483523206 0.361360513874867 0.6529766 0.33194512 prediction 0.485746967046413 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23521274 chr5:23521277 nonsynonymous SNV 0.015 0 24 hm5C_associated_SNPs_67959 0 0 0 0 1 PRDM9 chr5:23521288 5'GT 23521288 Upstream 12bp
chr11 66613413 66613413 1 + A C KIRP 66613412 + 66613392 66613432 41 TTGCGCGGCCTTGGAGCACCCACAGAGGCGGCCCCTGCTGG TTGCGCGGCCTTGGAGCACCCCCAGAGGCGGCCCCTGCTGG < 41bp 0.773173285173338 0.53030066833279 0.3922964 0.77874696 prediction 0.485745233681096 Functional Loss - RCE1 ENSG00000173653 CDS Human protein_coding chr11:66613412 chr11:66613413 synonymous SNV . 0 22 hm5C_associated_SNPs_67960 0 0 1 0 1 RCE1 chr11:66613331 3'AG 66613331 Downstream 83bp
chr22 29708221 29708221 1 + G A STAD 29708218 + 29708198 29708238 41 GGCCAATGGGCTGCCTGGGCCCCGAAGCCAAGCCCTTTCCA GGCCAATGGGCTGCCTGGGCCCCAAAGCCAAGCCCTTTCCA < 41bp 0.742871182814772 0.499150348876958 0.09259987 0.022916555 prediction 0.485742365629544 Functional Loss - GAS2L1 ENSG00000185340 CDS Human protein_coding chr22:29708218 chr22:29708221 nonsynonymous SNV 0.953 2 24 hm5C_associated_SNPs_67961 0 0 1 0 1 GAS2L1 chr22:29708132 3'AG 29708132 Downstream 90bp
chr1 17586161 17586161 1 + G T BLCA 17586158 + 17586138 17586178 41 CTCCCAACATGGAGAGGGGCCGGGAGCGTGCAGACACCAGG CTCCCAACATGGAGAGGGGCCGGTAGCGTGCAGACACCAGG < 41bp 0.923193852855305 0.680327498372308 0.83927476 0.5138758 prediction 0.485732708965992 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17586158 chr1:17586161 stopgain 0.519 0 24 hm5C_associated_SNPs_67963 0 0 0 0 2 PADI3 chr1:17586073 3'AG 17586073 Downstream 89bp
chr1 17586161 17586161 1 + G T BLCA 17586158 + 17586138 17586178 41 CTCCCAACATGGAGAGGGGCCGGGAGCGTGCAGACACCAGG CTCCCAACATGGAGAGGGGCCGGTAGCGTGCAGACACCAGG < 41bp 0.923193852855305 0.680327498372308 0.83927476 0.5138758 prediction 0.485732708965992 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17586158 chr1:17586161 stopgain 0.519 0 24 hm5C_associated_SNPs_67963 0 0 0 0 2 PADI3 chr1:17586253 5'GT 17586253 Upstream 93bp
chr12 13366731 13366731 1 + T C LUAD 13366730 + 13366710 13366750 41 AAGGGAAACCGGTTCTTCCTCTCAGGGGCCACCACACTGGT AAGGGAAACCGGTTCTTCCTCCCAGGGGCCACCACACTGGT < 41bp 0.806780510354078 0.563914293342555 0.029346943 0.23885018 prediction 0.485732434023048 Functional Loss - EMP1 ENSG00000134531 CDS Human protein_coding chr12:13366730 chr12:13366731 nonsynonymous SNV 0.953 5 22 hm5C_associated_SNPs_67964 0 0 0 0 1 EMP1 chr12:13366755 5'GT 13366755 Upstream 25bp
chr19 38899412 38899412 1 + G A SKCM 38899409 + 38899389 38899429 41 AGGTGCTTATGGGCAACGTTCCAGACCGGGGGGGCCGCCCA AGGTGCTTATGGGCAACGTTCCAAACCGGGGGGGCCGCCCA < 41bp 0.74562476082076 0.50276326810411 0.09963438 0.106119156 prediction 0.485722985433301 Functional Loss - FAM98C ENSG00000130244 CDS Human protein_coding chr19:38899409 chr19:38899412 nonsynonymous SNV 0.983 3 24 hm5C_associated_SNPs_67966 0 0 1 0 1 FAM98C chr19:38899391 3'AG 38899391 Downstream 22bp
chr7 86991129 86991129 1 + G T GBM 86991127 + 86991107 86991147 41 ATTTTCTACCTGCAAGGTTCCAGGAATTACTAGAGACTCCA ATTTTCTACCTGCAAGGTTCCATGAATTACTAGAGACTCCA < 41bp 0.742859125779951 0.405916194490744 0.36120605 0.1483528 prediction 0.485718251559902 Functional Loss - CROT ENSG00000005469 CDS Human protein_coding chr7:86991127 chr7:86991129 stopgain 1.000 1 23 hm5C_associated_SNPs_67967 0 0 0 0 2 CROT chr7:86991044 3'AG 86991044 Downstream 86bp
chr7 86991129 86991129 1 + G T GBM 86991127 + 86991107 86991147 41 ATTTTCTACCTGCAAGGTTCCAGGAATTACTAGAGACTCCA ATTTTCTACCTGCAAGGTTCCATGAATTACTAGAGACTCCA < 41bp 0.742859125779951 0.405916194490744 0.36120605 0.1483528 prediction 0.485718251559902 Functional Loss - CROT ENSG00000005469 CDS Human protein_coding chr7:86991127 chr7:86991129 stopgain 1.000 1 23 hm5C_associated_SNPs_67967 0 0 0 0 2 CROT chr7:86991168 5'GT 86991168 Upstream 40bp
chr17 78086425 78086425 1 + G A GBM 78086422 + 78086402 78086442 41 CGCCCATTTGTGATCTCCCGCTCGACCTTTGCTGGCCACGG CGCCCATTTGTGATCTCCCGCTCAACCTTTGCTGGCCACGG < 41bp 0.742855015873088 0.499689473285319 0.044078857 0.05846286 prediction 0.485710031746176 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78086422 chr17:78086425 synonymous SNV . 0 24 hm5C_associated_SNPs_67969 0 0 1 0 2 GAA chr17:78086377 3'AG 78086377 Downstream 49bp
chr17 78086425 78086425 1 + G A GBM 78086422 + 78086402 78086442 41 CGCCCATTTGTGATCTCCCGCTCGACCTTTGCTGGCCACGG CGCCCATTTGTGATCTCCCGCTCAACCTTTGCTGGCCACGG < 41bp 0.742855015873088 0.499689473285319 0.044078857 0.05846286 prediction 0.485710031746176 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78086422 chr17:78086425 synonymous SNV . 0 24 hm5C_associated_SNPs_67969 0 0 1 0 2 GAA chr17:78086510 5'GT 78086510 Upstream 86bp
chr1 158063551 158063551 1 + C T rs139995772 158063549 + 158063529 158063569 41 CGGGTCATGAAGGCCATCTACTCGGTGAGGGTCCTGCTCCT CGGGTCATGAAGGCCATCTACTTGGTGAGGGTCCTGCTCCT < 41bp 0.828790398052147 0.585938584407779 0.90523374 0.8896423 prediction 0.485703627288737 Functional Loss - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063549 chr1:158063551 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_67971 0 0 0 0 1 KIRREL chr1:158063552 5'GT 158063552 Upstream 2bp
chr17 73008954 73008954 1 + C T GBM 73008952 + 73008932 73008972 41 GAATCTCAGGGCTCGGACACCGCCTGGAGGGTCCCGGTGAG GAATCTCAGGGCTCGGACACCGTCTGGAGGGTCCCGGTGAG < 41bp 0.770363034956908 0.527514467090237 0.51247936 0.5670944 prediction 0.485697135733342 Functional Loss - MRPL58 ENSG00000167862 CDS Human protein_coding chr17:73008952 chr17:73008954 nonsynonymous SNV 0.992 0 23 hm5C_associated_SNPs_67972 0 0 1 0 1 MRPL58 chr17:73008967 5'GT 73008967 Upstream 14bp
chr17 6927475 6927475 1 + G A BLCA 6927472 + 6927452 6927492 41 TGCTCTCTCTGCCCGGGGGTCCCGAAGCGAGAGGCTTCGCC TGCTCTCTCTGCCCGGGGGTCCCAAAGCGAGAGGCTTCGCC < 41bp 0.742846124237865 0.497404701430758 0.8117868 0.46508738 prediction 0.48569224847573 Functional Loss - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6927472 chr17:6927475 nonsynonymous SNV 0.849 3 24 hm5C_associated_SNPs_67973 0 0 0 0 1 BCL6B chr17:6927402 3'AG 6927402 Downstream 74bp
chr17 6927474 6927474 1 + C T STAD 6927472 + 6927452 6927492 41 TGCTCTCTCTGCCCGGGGGTCCCGAAGCGAGAGGCTTCGCC TGCTCTCTCTGCCCGGGGGTCCTGAAGCGAGAGGCTTCGCC < 41bp 0.742846124237865 0.470307300354908 0.8117868 0.6544052 prediction 0.48569224847573 Functional Loss - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6927472 chr17:6927474 synonymous SNV . 0 23 hm5C_associated_SNPs_67974 0 0 0 0 1 BCL6B chr17:6927402 3'AG 6927402 Downstream 73bp
chr17 72920736 72920736 1 + G C LUAD 72920732 + 72920712 72920752 41 TCCAGTCGCCTCCGCCATGTCCGAGGAGCTGGCCCAGGGCC TCCAGTCGCCTCCGCCATGTCCGACGAGCTGGCCCAGGGCC < 41bp 0.742841729362875 0.450130640330135 0.87227666 0.06899658 prediction 0.485683458725749 Functional Loss - OTOP2 ENSG00000183034 CDS Human protein_coding chr17:72920732 chr17:72920736 nonsynonymous SNV 0.919 0 25 hm5C_associated_SNPs_67976 0 0 0 0 1 OTOP2 chr17:72920695 3'AG 72920695 Downstream 42bp
chr17 72942796 72942796 1 + G A KIRP 72942793 + 72942773 72942813 41 TGTCTGTGCCTCAATGCCACCGCGTGTGAAGCTTTCCGGAG TGTCTGTGCCTCAATGCCACCGCATGTGAAGCTTTCCGGAG < 41bp 0.742838687083598 0.49935068443219 0.18871447 0.03734067 prediction 0.485677374167196 Functional Loss - OTOP3 ENSG00000182938 CDS Human protein_coding chr17:72942793 chr17:72942796 synonymous SNV . 0 24 hm5C_associated_SNPs_67977 0 0 0 0 1 OTOP3 chr17:72942756 3'AG 72942756 Downstream 41bp
chr4 69692179 69692179 1 + C T UCEC 69692177 + 69692157 69692197 41 AGATGCCTTAGGTCTCAATACTCGACTGTACAAGTGGATAC AGATGCCTTAGGTCTCAATACTTGACTGTACAAGTGGATAC < 41bp 0.837594674998992 0.594760398672447 0.4442406 0.17592433 prediction 0.48566855265309 Functional Loss - UGT2B10 ENSG00000109181 CDS Human protein_coding chr4:69692177 chr4:69692179 stopgain 0.282 0 23 hm5C_associated_SNPs_67979 0 0 1 0 2 UGT2B10 chr4:69692128 3'AG 69692128 Downstream 52bp
chr4 69692179 69692179 1 + C T UCEC 69692177 + 69692157 69692197 41 AGATGCCTTAGGTCTCAATACTCGACTGTACAAGTGGATAC AGATGCCTTAGGTCTCAATACTTGACTGTACAAGTGGATAC < 41bp 0.837594674998992 0.594760398672447 0.4442406 0.17592433 prediction 0.48566855265309 Functional Loss - UGT2B10 ENSG00000109181 CDS Human protein_coding chr4:69692177 chr4:69692179 stopgain 0.282 0 23 hm5C_associated_SNPs_67979 0 0 1 0 2 UGT2B10 chr4:69692215 5'GT 69692215 Upstream 37bp
chr13 31498546 31498546 1 + G T LUSC 31498544 + 31498524 31498564 41 ATTTCCAAGTGTTCTGGAATCTGAAGAGACACCCAACCAAT ATTTCCAAGTGTTCTGGAATCTTAAGAGACACCCAACCAAT < 41bp 0.742832165138641 0.482829925368206 0.18996283 0.09676394 prediction 0.485664330277282 Functional Loss - MEDAG ENSG00000102802 CDS Human protein_coding chr13:31498544 chr13:31498546 stopgain 1.000 0 23 hm5C_associated_SNPs_67980 0 0 0 0 1 MEDAG chr13:31498448 3'AG 31498448 Downstream 99bp
chr7 101183303 101183303 1 + C T UCEC 101183301 + 101183281 101183321 41 CCCTCTTGCTCACCCTGTGCCACGACAGAGAAGGCCCACGG CCCTCTTGCTCACCCTGTGCCATGACAGAGAAGGCCCACGG < 41bp 0.787684949072421 0.544853683519541 0.027534842 0.030347377 prediction 0.485662531105761 Functional Loss - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101183301 chr7:101183303 stopgain 0.274 0 23 hm5C_associated_SNPs_67981 0 0 1 0 1 COL26A1 chr7:101183330 5'GT 101183330 Upstream 28bp
chr17 73723531 73723531 1 + C T UCEC 73723529 + 73723509 73723549 41 ACCCAGGCGGAGCTGCTGGCCGCGGGCTGCCAGCGGGAGAG ACCCAGGCGGAGCTGCTGGCCGTGGGCTGCCAGCGGGAGAG < 41bp 0.745971792529563 0.503142665395949 0.39262035 0.16627145 prediction 0.485658254267229 Functional Loss - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73723529 chr17:73723531 nonsynonymous SNV 0.160 1 23 hm5C_associated_SNPs_67982 0 0 0 0 2 ITGB4 chr17:73723485 3'AG 73723485 Downstream 47bp
chr17 73723531 73723531 1 + C T UCEC 73723529 + 73723509 73723549 41 ACCCAGGCGGAGCTGCTGGCCGCGGGCTGCCAGCGGGAGAG ACCCAGGCGGAGCTGCTGGCCGTGGGCTGCCAGCGGGAGAG < 41bp 0.745971792529563 0.503142665395949 0.39262035 0.16627145 prediction 0.485658254267229 Functional Loss - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73723529 chr17:73723531 nonsynonymous SNV 0.160 1 23 hm5C_associated_SNPs_67982 0 0 0 0 2 ITGB4 chr17:73723586 5'GT 73723586 Upstream 56bp
chr8 145235403 145235403 1 + C T rs145624802 145235401 + 145235381 145235421 41 CTGGGCGTGGCCAAGCAGGACACGGTGCGCGTGGCCTTCTG CTGGGCGTGGCCAAGCAGGACATGGTGCGCGTGGCCTTCTG < 41bp 0.742828994659007 0.499767403198474 0.32887238 0.39368793 prediction 0.485657989318013 Functional Loss - MROH1 ENSG00000179832 CDS Human protein_coding chr8:145235401 chr8:145235403 nonsynonymous SNV 0.010 2 23 hm5C_associated_SNPs_67983 0 0 1 0 1 MROH1 chr8:145235426 5'GT 145235426 Upstream 24bp
chr10 14880394 14880394 1 + G T rs45622935 14880392 + 14880372 14880412 41 CATTCCTGCCGCTGCCGTCCCTGCTGCCTCATGGCGGCCAT CATTCCTGCCGCTGCCGTCCCTTCTGCCTCATGGCGGCCAT < 41bp 0.7428233400328 0.413009829607903 0.35888013 0.08658719 prediction 0.485646680065601 Functional Loss - HSPA14 ENSG00000187522 UTR5 Human protein_coding chr10:14880392 chr10:14880394 . . 0 23 hm5C_associated_SNPs_67985 0 0 1 0 1 HSPA14 chr10:14880458 5'GT 14880458 Upstream 65bp
chr1 207242835 207242835 1 + G T COAD 207242832 + 207242812 207242852 41 ACCCAGAAGAGTTTGCACTTCGAGATCAAGAGAAGTATCTG ACCCAGAAGAGTTTGCACTTCGATATCAAGAGAAGTATCTG < 41bp 0.742821697497085 0.356484465560218 0.25408316 0.08031595 prediction 0.48564339499417 Functional Loss - PFKFB2 ENSG00000123836 CDS Human protein_coding chr1:207242832 chr1:207242835 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_67987 0 0 1 0 1 PFKFB2 chr1:207242873 5'GT 207242873 Upstream 39bp
chr10 90365424 90365424 1 + G T SARC 90365422 + 90365402 90365442 41 ACTCATTTGAAAGCTTATGACTGGGGCAGTCCTGATCTGAA ACTCATTTGAAAGCTTATGACTTGGGCAGTCCTGATCTGAA < 41bp 0.742815095095249 0.430538375531842 0.3652714 0.12517262 prediction 0.485630190190497 Functional Loss - LIPJ ENSG00000204022 CDS Human protein_coding chr10:90365422 chr10:90365424 nonsynonymous SNV 0.976 4 23 hm5C_associated_SNPs_67989 0 0 0 0 2 LIPJ chr10:90365390 3'AG 90365390 Downstream 35bp
chr10 90365424 90365424 1 + G T SARC 90365422 + 90365402 90365442 41 ACTCATTTGAAAGCTTATGACTGGGGCAGTCCTGATCTGAA ACTCATTTGAAAGCTTATGACTTGGGCAGTCCTGATCTGAA < 41bp 0.742815095095249 0.430538375531842 0.3652714 0.12517262 prediction 0.485630190190497 Functional Loss - LIPJ ENSG00000204022 CDS Human protein_coding chr10:90365422 chr10:90365424 nonsynonymous SNV 0.976 4 23 hm5C_associated_SNPs_67989 0 0 0 0 2 LIPJ chr10:90365461 5'GT 90365461 Upstream 38bp
chr12 120518804 120518804 1 + C T UCEC 120518802 + 120518782 120518822 41 TTCAGAAGGCCATCAGGGACCGCGACGAGGCCATTGCAAAG TTCAGAAGGCCATCAGGGACCGTGACGAGGCCATTGCAAAG < 41bp 0.825046791900613 0.582231754960652 0.19755411 0.13776502 prediction 0.485630073879922 Functional Loss - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120518802 chr12:120518804 stopgain . 0 23 hm5C_associated_SNPs_67990 0 0 0 0 1 BICDL1 chr12:120518821 5'GT 120518821 Upstream 18bp
chr19 50385510 50385510 1 + G A SKCM 50385507 + 50385487 50385527 41 CCTCGTCCCCAGCGCTTCCTCCAGGATCCCTACTCCACCAC CCTCGTCCCCAGCGCTTCCTCCAAGATCCCTACTCCACCAC < 41bp 0.764798390992343 0.521987825031857 0.917359 0.7817093 prediction 0.485621131920973 Functional Loss - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385507 chr19:50385510 synonymous SNV . 0 24 hm5C_associated_SNPs_67991 0 0 1 0 1 TBC1D17 chr19:50385499 3'AG 50385499 Downstream 12bp
chr3 58111396 58111396 1 + T C BLCA 58111395 + 58111375 58111415 41 CACTGAAGGCTGCCAGCCATCTAGGGTGCAAGCCCAAGGAC CACTGAAGGCTGCCAGCCATCCAGGGTGCAAGCCCAAGGAC < 41bp 0.742810483561513 0.495280446821573 0.8492143 0.922546 prediction 0.485620967123027 Functional Loss - FLNB ENSG00000136068 CDS Human protein_coding chr3:58111395 chr3:58111396 synonymous SNV . 0 22 hm5C_associated_SNPs_67992 0 0 1 0 2 FLNB chr3:58111308 3'AG 58111308 Downstream 89bp
chr3 58111396 58111396 1 + T C BLCA 58111395 + 58111375 58111415 41 CACTGAAGGCTGCCAGCCATCTAGGGTGCAAGCCCAAGGAC CACTGAAGGCTGCCAGCCATCCAGGGTGCAAGCCCAAGGAC < 41bp 0.742810483561513 0.495280446821573 0.8492143 0.922546 prediction 0.485620967123027 Functional Loss - FLNB ENSG00000136068 CDS Human protein_coding chr3:58111395 chr3:58111396 synonymous SNV . 0 22 hm5C_associated_SNPs_67992 0 0 1 0 2 FLNB chr3:58111470 5'GT 58111470 Upstream 75bp
chr16 28883644 28883644 1 + C T HNSC 28883642 + 28883622 28883662 41 TGACTGGCGGCACTGGCTCCCACGGTGTCTTCCTGGTGCGC TGACTGGCGGCACTGGCTCCCATGGTGTCTTCCTGGTGCGC < 41bp 0.742803025424123 0.483398317369696 0.81214356 0.43052527 prediction 0.485606050848245 Functional Loss - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28883642 chr16:28883644 synonymous SNV . 0 23 hm5C_associated_SNPs_67993 0 0 1 0 1 SH2B1 chr16:28883722 5'GT 28883722 Upstream 79bp
chr19 3148655 3148655 1 + C T COAD 3148653 + 3148633 3148673 41 ATCATCCACGGCGCCGGCTACTCGGAGGAGGAGCGCAAGGG ATCATCCACGGCGCCGGCTACTTGGAGGAGGAGCGCAAGGG < 41bp 0.815144000844572 0.572343026818157 0.47521722 0.45917773 prediction 0.485601948052829 Functional Loss - GNA15 ENSG00000060558 CDS Human protein_coding chr19:3148653 chr19:3148655 nonsynonymous SNV 0.766 3 23 hm5C_associated_SNPs_67994 0 0 0 0 1 GNA15 chr19:3148589 3'AG 3148589 Downstream 67bp
chr20 39729874 39729874 1 + C T SKCM 39729872 + 39729852 39729892 41 TGCCAAGGTTCCTTCTCCTCCTCCAGGACATAAGTGGAAAG TGCCAAGGTTCCTTCTCCTCCTTCAGGACATAAGTGGAAAG < 41bp 0.742800609899471 0.428953198818663 0.9251303 0.14416638 prediction 0.485601219798942 Functional Loss - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39729872 chr20:39729874 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_67995 0 0 1 0 1 TOP1 chr20:39729849 3'AG 39729849 Downstream 26bp
chr17 40913905 40913905 1 + C T UCEC 40913903 + 40913883 40913923 41 GCCTCTTCCCACCACAGGCACACCAGGGTCAGAAGGTGGGT GCCTCTTCCCACCACAGGCACATCAGGGTCAGAAGGTGGGT < 41bp 0.753891342535218 0.511108737523706 0.25470388 0.42296785 prediction 0.485565210023025 Functional Loss - RAMP2 ENSG00000131477 CDS Human protein_coding chr17:40913903 chr17:40913905 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_68002 0 0 0 0 1 RAMP2 chr17:40913917 5'GT 40913917 Upstream 13bp
chr7 105636753 105636753 1 + C T SKCM 105636751 + 105636731 105636771 41 GCCTCAAAGCCTCCACAGAGCTCCAGGTGAACATCGTGAAC GCCTCAAAGCCTCCACAGAGCTTCAGGTGAACATCGTGAAC < 41bp 0.742779133891432 0.457228794931685 0.17577511 0.08116755 prediction 0.485558267782865 Functional Loss - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105636751 chr7:105636753 synonymous SNV . 0 23 hm5C_associated_SNPs_68005 0 0 0 0 2 CDHR3 chr7:105636696 3'AG 105636696 Downstream 58bp
chr7 105636753 105636753 1 + C T SKCM 105636751 + 105636731 105636771 41 GCCTCAAAGCCTCCACAGAGCTCCAGGTGAACATCGTGAAC GCCTCAAAGCCTCCACAGAGCTTCAGGTGAACATCGTGAAC < 41bp 0.742779133891432 0.457228794931685 0.17577511 0.08116755 prediction 0.485558267782865 Functional Loss - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105636751 chr7:105636753 synonymous SNV . 0 23 hm5C_associated_SNPs_68005 0 0 0 0 2 CDHR3 chr7:105636800 5'GT 105636800 Upstream 48bp
chr15 45567640 45567640 1 + G C UCEC 45567636 + 45567616 45567656 41 CCTCCTTCTTTTTCTGGTCCCTGGGAAGATAAGGAGTTCAG CCTCCTTCTTTTTCTGGTCCCTGGCAAGATAAGGAGTTCAG < 41bp 0.742773147822143 0.464909780863634 0.113488436 0.023863554 prediction 0.485546295644286 Functional Loss - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45567636 chr15:45567640 nonsynonymous SNV 0.990 0 25 hm5C_associated_SNPs_68006 0 0 0 0 1 SLC28A2 chr15:45567594 3'AG 45567594 Downstream 47bp
chr4 39184169 39184169 1 + A C rs60800612 39184165 + 39184145 39184185 41 CTTCATAGTTCGCGTAGCGGCTCGAGCGTGGAGATGAAGGT CTTCATAGTTCGCGTAGCGGCTCGCGCGTGGAGATGAAGGT < 41bp 0.74277240321297 0.46602027471628 0.1692782 0.06992176 prediction 0.48554480642594 Functional Loss - WDR19 ENSG00000157796 UTR5 Human protein_coding chr4:39184165 chr4:39184169 . . 0 25 hm5C_associated_SNPs_68007 0 0 1 0 1 WDR19 chr4:39184183 5'GT 39184183 Upstream 15bp
chr7 150732998 150732998 1 + G T LUAD 150732995 + 150732975 150733015 41 AGGGCAATGGGCGTAGCAGACGAGGCCCTGGGCAATGTGCG AGGGCAATGGGCGTAGCAGACGATGCCCTGGGCAATGTGCG < 41bp 0.742765184158562 0.335182843014551 0.8663863 0.31004673 prediction 0.485530368317125 Functional Loss - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150732995 chr7:150732998 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_68011 0 0 1 0 2 ABCB8 chr7:150732969 3'AG 150732969 Downstream 30bp
chr7 150732998 150732998 1 + G T LUAD 150732995 + 150732975 150733015 41 AGGGCAATGGGCGTAGCAGACGAGGCCCTGGGCAATGTGCG AGGGCAATGGGCGTAGCAGACGATGCCCTGGGCAATGTGCG < 41bp 0.742765184158562 0.335182843014551 0.8663863 0.31004673 prediction 0.485530368317125 Functional Loss - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150732995 chr7:150732998 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_68011 0 0 1 0 2 ABCB8 chr7:150733054 5'GT 150733054 Upstream 57bp
chrX 47101018 47101018 1 + G A UCEC 47101015 + 47100995 47101035 41 AGGAGCTGCTGTCATTCCTCCTGGACGGGCTGCATGAGGAC AGGAGCTGCTGTCATTCCTCCTGAACGGGCTGCATGAGGAC < 41bp 0.75910343339731 0.516339095157749 0.4878462 0.25214207 prediction 0.485528676479123 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47101015 chrX:47101018 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_68012 0 0 1 0 2 USP11 chrX:47100940 3'AG 47100940 Downstream 79bp
chrX 47101018 47101018 1 + G A UCEC 47101015 + 47100995 47101035 41 AGGAGCTGCTGTCATTCCTCCTGGACGGGCTGCATGAGGAC AGGAGCTGCTGTCATTCCTCCTGAACGGGCTGCATGAGGAC < 41bp 0.75910343339731 0.516339095157749 0.4878462 0.25214207 prediction 0.485528676479123 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47101015 chrX:47101018 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_68012 0 0 1 0 2 USP11 chrX:47101098 5'GT 47101098 Upstream 81bp
chr1 201974754 201974754 1 + C T rs145130543 201974752 + 201974732 201974772 41 GCAGTGAGGTGGCCCAGACCCTCGCCAAGGAGACTTTTGCA GCAGTGAGGTGGCCCAGACCCTTGCCAAGGAGACTTTTGCA < 41bp 0.742761493878284 0.474624677834451 0.30908954 0.08123374 prediction 0.485522987756568 Functional Loss - RNPEP ENSG00000176393 CDS Human protein_coding chr1:201974752 chr1:201974754 synonymous SNV . 0 23 hm5C_associated_SNPs_68013 0 0 1 0 1 RNPEP chr1:201974686 3'AG 201974686 Downstream 69bp
chr1 161479704 161479704 1 + G A rs111242375 161479701 + 161479681 161479721 41 TGGAAGGACAAGCCTCTGGTCAAGGTCACATTCTTCCAGAA TGGAAGGACAAGCCTCTGGTCAAAGTCACATTCTTCCAGAA < 41bp 0.75280344906378 0.510048709630584 0.35853618 0.20910037 prediction 0.485509478866392 Functional Loss - FCGR2A ENSG00000143226 CDS Human protein_coding chr1:161479701 chr1:161479704 synonymous SNV . 0 24 hm5C_associated_SNPs_68015 0 0 0 0 1 FCGR2A chr1:161479610 3'AG 161479610 Downstream 95bp
chr16 1812972 1812972 1 + G A rs2294616 1812969 + 1812949 1812989 41 AACCATGCCATGTGCCCGATCTCGGCAGGCAGCCGGCCCCT AACCATGCCATGTGCCCGATCTCAGCAGGCAGCCGGCCCCT < 41bp 0.742754378888346 0.495749955673973 0.58635795 0.15037423 prediction 0.485508757776691 Functional Loss - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1812969 chr16:1812972 synonymous SNV . 0 24 hm5C_associated_SNPs_68016 0 0 0 0 1 MAPK8IP3 chr16:1813007 5'GT 1813007 Upstream 36bp
chr11 117060969 117060969 1 + C T CESC 117060967 + 117060947 117060987 41 TCCTGCAACGGGAGATCAACCACAACCGGGCCCTGCTGCGC TCCTGCAACGGGAGATCAACCATAACCGGGCCCTGCTGCGC < 41bp 0.815130893129241 0.572380597978491 0.033396542 0.04113975 prediction 0.485500590301501 Functional Loss - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117060967 chr11:117060969 synonymous SNV . 0 23 hm5C_associated_SNPs_68018 0 0 1 0 2 SIDT2 chr11:117060882 3'AG 117060882 Downstream 88bp
chr11 117060969 117060969 1 + C T CESC 117060967 + 117060947 117060987 41 TCCTGCAACGGGAGATCAACCACAACCGGGCCCTGCTGCGC TCCTGCAACGGGAGATCAACCATAACCGGGCCCTGCTGCGC < 41bp 0.815130893129241 0.572380597978491 0.033396542 0.04113975 prediction 0.485500590301501 Functional Loss - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117060967 chr11:117060969 synonymous SNV . 0 23 hm5C_associated_SNPs_68018 0 0 1 0 2 SIDT2 chr11:117061005 5'GT 117061005 Upstream 37bp
chr6 167585706 167585706 1 + G T HNSC 167585703 + 167585683 167585723 41 AGAGGACCCGTGCCCGGGAGCTGGGGCTGCCATGGAGAAGA AGAGGACCCGTGCCCGGGAGCTGTGGCTGCCATGGAGAAGA < 41bp 0.922583209601737 0.679838913965068 0.8239621 0.1221993 prediction 0.485488591273339 Functional Loss - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167585703 chr6:167585706 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_68020 0 0 0 0 2 TCP10L2 chr6:167585632 3'AG 167585632 Downstream 75bp
chr6 167585706 167585706 1 + G T HNSC 167585703 + 167585683 167585723 41 AGAGGACCCGTGCCCGGGAGCTGGGGCTGCCATGGAGAAGA AGAGGACCCGTGCCCGGGAGCTGTGGCTGCCATGGAGAAGA < 41bp 0.922583209601737 0.679838913965068 0.8239621 0.1221993 prediction 0.485488591273339 Functional Loss - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167585703 chr6:167585706 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_68020 0 0 0 0 2 TCP10L2 chr6:167585776 5'GT 167585776 Upstream 71bp
chr1 228238438 228238438 1 + C T UCEC 228238436 + 228238416 228238456 41 ACACGCTCATGTGCAGAAGGCACGGCCGCCATCTGTGGCTG ACACGCTCATGTGCAGAAGGCATGGCCGCCATCTGTGGCTG < 41bp 0.771535982062017 0.528794180274451 0.15658498 0.11875293 prediction 0.485483603575131 Functional Loss - WNT3A ENSG00000154342 CDS Human protein_coding chr1:228238436 chr1:228238438 nonsynonymous SNV 0.039 2 23 hm5C_associated_SNPs_68021 0 0 0 0 1 WNT3A chr1:228238357 3'AG 228238357 Downstream 82bp
chr5 169506014 169506014 1 + G T UCEC 169506011 + 169505991 169506031 41 ATTAGCATCACCCAAGACGCCGAGAGTGGAGCAGGAGGAAC ATTAGCATCACCCAAGACGCCGATAGTGGAGCAGGAGGAAC < 41bp 0.74274127120746 0.383743620993931 0.47404215 0.33194542 prediction 0.485482542414921 Functional Loss - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169506011 chr5:169506014 nonsynonymous SNV 0.027 0 24 hm5C_associated_SNPs_68022 0 0 1 0 1 DOCK2 chr5:169505979 3'AG 169505979 Downstream 36bp
chrX 100646028 100646028 1 + A C STAD 100646027 + 100646007 100646047 41 CCGCGCCGATAGCGCTCACGCAAGCATGGTAGGACTTGCTG CCGCGCCGATAGCGCTCACGCCAGCATGGTAGGACTTGCTG < 41bp 0.74274017565223 0.487666676469207 0.40893373 0.23317769 prediction 0.48548035130446 Functional Loss - RPL36A;RPL36A-HNRNPH2 ENSG00000241343;ENSG00000257529 CDS Human other chrX:100646027 chrX:100646028 synonymous SNV . 0 22 hm5C_associated_SNPs_68024 0 0 1 0 1 RPL36A;RPL36A-HNRNPH2 chrX:100646034 5'GT 100646034 Upstream 7bp
chr5 42700057 42700057 1 + G T LUSC 42700054 + 42700034 42700074 41 TTCAGAAAGGATGGATGGTTCTGGAGTATGAACTTCAATAC TTCAGAAAGGATGGATGGTTCTGTAGTATGAACTTCAATAC < 41bp 0.892178463729248 0.649438994131907 0.2517997 0.16672128 prediction 0.485478939194682 Functional Loss - GHR ENSG00000112964 CDS Human protein_coding chr5:42700054 chr5:42700057 stopgain 0.995 1 24 hm5C_associated_SNPs_68025 0 0 0 0 1 GHR chr5:42700104 5'GT 42700104 Upstream 48bp
chr20 35507587 35507587 1 + G T UCEC 35507584 + 35507564 35507604 41 GTGCTGCTGGTGCTCAGGGACCAGGACGGGCAGGTGAGCTG GTGCTGCTGGTGCTCAGGGACCATGACGGGCAGGTGAGCTG < 41bp 0.742739154326735 0.348039699867269 0.5398564 0.40717772 prediction 0.48547830865347 Functional Loss - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35507584 chr20:35507587 nonsynonymous SNV 0.853 0 24 hm5C_associated_SNPs_68026 0 0 0 0 1 TLDC2 chr20:35507596 5'GT 35507596 Upstream 10bp
chr7 101063375 101063375 1 + C T SKCM 101063373 + 101063353 101063393 41 GGCCGGGGCCCTGCGCCAACCTCGTAAGGTAAAGGCCGCTG GGCCGGGGCCCTGCGCCAACCTTGTAAGGTAAAGGCCGCTG < 41bp 0.742736887975317 0.481764151274641 0.6390337 0.5913608 prediction 0.485473775950634 Functional Loss - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101063373 chr7:101063375 synonymous SNV . 0 23 hm5C_associated_SNPs_68027 0 0 0 0 1 COL26A1 chr7:101063380 5'GT 101063380 Upstream 6bp
chr1 160389332 160389332 1 + C T BLCA 160389330 + 160389310 160389350 41 GGAGCTGCGCCAGCTCCAGCCTCAGTTCACGCTCAAGGTCG GGAGCTGCGCCAGCTCCAGCCTTAGTTCACGCTCAAGGTCG < 41bp 0.742730278121096 0.488844757238275 0.42192048 0.32737088 prediction 0.485460556242192 Functional Loss - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160389330 chr1:160389332 stopgain 0.994 1 23 hm5C_associated_SNPs_68029 0 0 0 0 1 VANGL2 chr1:160389399 5'GT 160389399 Upstream 68bp
chr2 1426892 1426892 1 + C T COAD 1426890 + 1426870 1426910 41 GTGGACACCGCCATGTACGCCACGATGCAGAGGTGAGCCTT GTGGACACCGCCATGTACGCCATGATGCAGAGGTGAGCCTT < 41bp 0.775927425539609 0.5332017110634 0.1128687 0.10264194 prediction 0.485451428952417 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1426890 chr2:1426892 nonsynonymous SNV 0.002 3 23 hm5C_associated_SNPs_68030 0 0 0 0 2 TPO chr2:1426817 3'AG 1426817 Downstream 76bp
chr2 1426892 1426892 1 + C T COAD 1426890 + 1426870 1426910 41 GTGGACACCGCCATGTACGCCACGATGCAGAGGTGAGCCTT GTGGACACCGCCATGTACGCCATGATGCAGAGGTGAGCCTT < 41bp 0.775927425539609 0.5332017110634 0.1128687 0.10264194 prediction 0.485451428952417 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1426890 chr2:1426892 nonsynonymous SNV 0.002 3 23 hm5C_associated_SNPs_68030 0 0 0 0 2 TPO chr2:1426901 5'GT 1426901 Upstream 10bp
chr10 54074383 54074383 1 + G A STAD 54074380 + 54074360 54074400 41 CCAGGCTCTGCAGTCAGCGCCGCGCCGGGAATCCTGTACCC CCAGGCTCTGCAGTCAGCGCCGCACCGGGAATCCTGTACCC < 41bp 0.747669024657392 0.5049550802671 0.7006676 0.32533976 prediction 0.485427888780584 Functional Loss - DKK1 ENSG00000107984 CDS Human protein_coding chr10:54074380 chr10:54074383 synonymous SNV . 0 24 hm5C_associated_SNPs_68033 0 0 1 0 1 DKK1 chr10:54074437 5'GT 54074437 Upstream 55bp
chr12 132241092 132241092 1 + G A COAD 132241089 + 132241069 132241109 41 AGTGATGCTGGGGAGGATGGCGCGCCTGAAGACGCAGCCGA AGTGATGCTGGGGAGGATGGCGCACCTGAAGACGCAGCCGA < 41bp 0.755570518520236 0.51286609274667 0.82477105 0.7000546 prediction 0.485408851547133 Functional Loss - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132241089 chr12:132241092 synonymous SNV . 0 24 hm5C_associated_SNPs_68036 0 0 1 0 2 SFSWAP chr12:132241018 3'AG 132241018 Downstream 75bp
chr12 132241092 132241092 1 + G A COAD 132241089 + 132241069 132241109 41 AGTGATGCTGGGGAGGATGGCGCGCCTGAAGACGCAGCCGA AGTGATGCTGGGGAGGATGGCGCACCTGAAGACGCAGCCGA < 41bp 0.755570518520236 0.51286609274667 0.82477105 0.7000546 prediction 0.485408851547133 Functional Loss - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132241089 chr12:132241092 synonymous SNV . 0 24 hm5C_associated_SNPs_68036 0 0 1 0 2 SFSWAP chr12:132241189 5'GT 132241189 Upstream 98bp
chr8 99168566 99168566 1 + G C UCEC 99168562 + 99168542 99168582 41 TGCAGGGTGTCAAGAATCGGCAGGGCCTGAGAGGATCACAG TGCAGGGTGTCAAGAATCGGCAGGCCCTGAGAGGATCACAG < 41bp 0.836248835508783 0.593544524808915 0.85577744 0.7717444 prediction 0.485408621399736 Functional Loss - POP1 ENSG00000104356 CDS Human protein_coding chr8:99168562 chr8:99168566 synonymous SNV . 0 25 hm5C_associated_SNPs_68037 0 0 0 0 1 POP1 chr8:99168640 5'GT 99168640 Upstream 75bp
chr8 22452082 22452082 1 + G T SKCM 22452079 + 22452059 22452099 41 TGGAGGGAATGAGATTGTCACTGGAAGCTTTGGAGGGGATG TGGAGGGAATGAGATTGTCACTGTAAGCTTTGGAGGGGATG < 41bp 0.742698202630834 0.358982614467293 0.27903223 0.114264995 prediction 0.485396405261668 Functional Loss - PDLIM2 ENSG00000120913 CDS Human protein_coding chr8:22452079 chr8:22452082 stopgain 0.001 0 24 hm5C_associated_SNPs_68040 0 0 0 0 1 PDLIM2 chr8:22452043 3'AG 22452043 Downstream 40bp
chr11 65486093 65486093 1 + G T UCEC 65486091 + 65486071 65486111 41 CTCCAAAGTGGAAGGGAAAACAGGGACCCCTGAGAAGCCCC CTCCAAAGTGGAAGGGAAAACATGGACCCCTGAGAAGCCCC < 41bp 0.893093576620245 0.650399907043636 0.8092827 0.31767923 prediction 0.485387339153219 Functional Loss - KAT5 ENSG00000172977 CDS Human protein_coding chr11:65486091 chr11:65486093 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_68041 0 0 1 0 1 KAT5 chr11:65486061 3'AG 65486061 Downstream 33bp
chr9 35846541 35846541 1 + G A rs76908268 35846538 + 35846518 35846558 41 TCCCCATGCGTGGACGACTGCGGGCCCTACGGCCAGTGCAA TCCCCATGCGTGGACGACTGCGGACCCTACGGCCAGTGCAA < 41bp 0.742688785502027 0.489541789531478 0.90964305 0.26919872 prediction 0.485377571004053 Functional Loss - TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35846538 chr9:35846541 synonymous SNV . 0 24 hm5C_associated_SNPs_68042 0 0 1 0 2 TMEM8B chr9:35846466 3'AG 35846466 Downstream 76bp
chr9 35846541 35846541 1 + G A rs76908268 35846538 + 35846518 35846558 41 TCCCCATGCGTGGACGACTGCGGGCCCTACGGCCAGTGCAA TCCCCATGCGTGGACGACTGCGGACCCTACGGCCAGTGCAA < 41bp 0.742688785502027 0.489541789531478 0.90964305 0.26919872 prediction 0.485377571004053 Functional Loss - TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35846538 chr9:35846541 synonymous SNV . 0 24 hm5C_associated_SNPs_68042 0 0 1 0 2 TMEM8B chr9:35846608 5'GT 35846608 Upstream 68bp
chr2 98355854 98355854 1 + G T UCEC 98355851 + 98355831 98355871 41 CCCACAGGTGGGAGGATCGCCCCGACTTCCTGACCGTGGAG CCCACAGGTGGGAGGATCGCCCCTACTTCCTGACCGTGGAG < 41bp 0.742684268675684 0.360959645438344 0.1428116 0.09340078 prediction 0.485368537351368 Functional Loss - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98355851 chr2:98355854 nonsynonymous SNV 0.903 2 24 hm5C_associated_SNPs_68045 0 0 0 0 1 ZAP70 chr2:98355838 3'AG 98355838 Downstream 17bp
chr11 36422780 36422780 1 + C T STAD 36422778 + 36422758 36422798 41 CCCCGTGCTCAGCGACCTTCCCCGATTCCAAGCAGCTCGGC CCCCGTGCTCAGCGACCTTCCCTGATTCCAAGCAGCTCGGC < 41bp 0.810692711373439 0.568018534144081 0.058201432 0.053983122 prediction 0.485348354458715 Functional Loss - PRR5L ENSG00000135362 CDS Human protein_coding chr11:36422778 chr11:36422780 stopgain 0.822 1 23 hm5C_associated_SNPs_68049 0 0 0 0 1 PRR5L chr11:36422835 5'GT 36422835 Upstream 56bp
chr9 86258355 86258355 1 + C T UCEC 86258353 + 86258333 86258373 41 TTTCTAAACAGAGATGTAGCCTCGGGACAGCGTGTGGTTCT TTTCTAAACAGAGATGTAGCCTTGGGACAGCGTGTGGTTCT < 41bp 0.805439714219896 0.562766012356602 0.13800475 0.09373355 prediction 0.485347403726588 Functional Loss - IDNK ENSG00000148057 CDS Human protein_coding chr9:86258353 chr9:86258355 nonsynonymous SNV 0.927 0 23 hm5C_associated_SNPs_68050 0 0 0 0 1 IDNK chr9:86258344 3'AG 86258344 Downstream 12bp
chr1 206566173 206566173 1 + G A BLCA 206566170 + 206566150 206566190 41 GCAGGAGGACCGGCAGACCCCACGCTCCCCTGACTCCACGG GCAGGAGGACCGGCAGACCCCACACTCCCCTGACTCCACGG < 41bp 0.746033469658153 0.50336493616414 0.33344978 0.28482813 prediction 0.485337066988027 Functional Loss - SRGAP2 ENSG00000163486 CDS Human other chr1:206566170 chr1:206566173 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_68052 0 0 1 0 1 SRGAP2 chr1:206566261 5'GT 206566261 Upstream 89bp
chr12 105553810 105553810 1 + C T UCEC 105553808 + 105553788 105553828 41 TTCAGTCCTCAGTGATCACACACGAAATTCTGCCGAAGGCA TTCAGTCCTCAGTGATCACACATGAAATTCTGCCGAAGGCA < 41bp 0.74266034065224 0.469570272728418 0.19947863 0.49351242 prediction 0.48532068130448 Functional Loss - WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105553808 chr12:105553810 stopgain 1.000 1 23 hm5C_associated_SNPs_68053 0 0 1 0 1 WASHC4 chr12:105553779 3'AG 105553779 Downstream 32bp
chr13 44463025 44463025 1 + G T COAD 44463022 + 44463002 44463042 41 ACCTTGCTGTTTTACTCTTCCAAGGGAATCAGCAGAGGCAT ACCTTGCTGTTTTACTCTTCCAATGGAATCAGCAGAGGCAT < 41bp 0.742655259256306 0.349708146682485 0.37594068 0.081893265 prediction 0.485310518512612 Functional Loss - LACC1 ENSG00000179630 CDS Human protein_coding chr13:44463022 chr13:44463025 nonsynonymous SNV 0.385 2 24 hm5C_associated_SNPs_68055 0 0 0 0 1 LACC1 chr13:44463118 5'GT 44463118 Upstream 94bp
chr19 19638159 19638159 1 + G T LUAD 19638157 + 19638137 19638177 41 TGTTACAGGCAGAAACCGACCGGAGGTAGCACCGCAGGGGC TGTTACAGGCAGAAACCGACCGTAGGTAGCACCGCAGGGGC < 41bp 0.897742741963077 0.655098064366372 0.8601225 0.22015622 prediction 0.48528935519341 Functional Loss - NDUFA13 ENSG00000186010;ENSG00000250067;ENSG00000258674 CDS Human other chr19:19638157 chr19:19638159 synonymous SNV . 0 23 hm5C_associated_SNPs_68057 0 0 1 0 2 NDUFA13 chr19:19638090 3'AG 19638090 Downstream 70bp
chr19 19638159 19638159 1 + G T LUAD 19638157 + 19638137 19638177 41 TGTTACAGGCAGAAACCGACCGGAGGTAGCACCGCAGGGGC TGTTACAGGCAGAAACCGACCGTAGGTAGCACCGCAGGGGC < 41bp 0.897742741963077 0.655098064366372 0.8601225 0.22015622 prediction 0.48528935519341 Functional Loss - NDUFA13 ENSG00000186010;ENSG00000250067;ENSG00000258674 CDS Human other chr19:19638157 chr19:19638159 synonymous SNV . 0 23 hm5C_associated_SNPs_68057 0 0 1 0 2 NDUFA13 chr19:19638161 5'GT 19638161 Upstream 3bp
chr16 58314626 58314626 1 - C A rs542193893 58314628 - 58314608 58314648 41 GCCCAATGATGTGCCAGCTACAGCAGTTCGATCTGTGGGTT GCCCAATGATGTGCCAGCTACATCAGTTCGATCTGTGGGTT < 41bp 0.889119805701007 0.646476240392877 0.26592767 0.13615265 prediction 0.485287130616261 Functional Loss - PRSS54 ENSG00000103023 CDS Human protein_coding chr16:58314628 chr16:58314626 nonsynonymous SNV 0.011 3 23 hm5C_associated_SNPs_68059 0 0 0 0 1 PRSS54 chr16:58314661 3'AG 58314661 Downstream 36bp
chr19 55476703 55476703 1 + G T rs533456357 55476701 + 55476681 55476721 41 CTTAATAGAGCTTTCTCAACCTGCAGCCCTCATCTCCGCCG CTTAATAGAGCTTTCTCAACCTTCAGCCCTCATCTCCGCCG < 41bp 0.872965959624994 0.630330457823589 0.09047401 0.10508478 prediction 0.485271003602812 Functional Loss - NLRP2 ENSG00000022556 UTR5 Human protein_coding chr19:55476701 chr19:55476703 . . 0 23 hm5C_associated_SNPs_68064 0 0 0 0 1 NLRP2 chr19:55476745 5'GT 55476745 Upstream 43bp
chr19 33608763 33608763 1 + A T LUAD 33608759 + 33608739 33608779 41 CAAAGATGTGGACGCACAGGCTGAAGGAGAAGGGAGCCGCC CAAAGATGTGGACGCACAGGCTGATGGAGAAGGGAGCCGCC < 41bp 0.742632068393285 0.416567442129944 0.39188528 0.32986462 prediction 0.485264136786569 Functional Loss - GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33608759 chr19:33608763 nonsynonymous SNV 0.089 0 25 hm5C_associated_SNPs_68066 0 0 0 0 1 GPATCH1 chr19:33608731 3'AG 33608731 Downstream 33bp
chr17 5998441 5998441 1 + C T HNSC 5998439 + 5998419 5998459 41 CAGGGCGGACCGCCACCTACCGCGGATGCTTCCGACTGCCA CAGGGCGGACCGCCACCTACCGTGGATGCTTCCGACTGCCA < 41bp 0.742630322189397 0.469473164167277 0.92515266 0.77650285 prediction 0.485260644378795 Functional Loss - WSCD1 ENSG00000179314 CDS Human protein_coding chr17:5998439 chr17:5998441 synonymous SNV . 0 23 hm5C_associated_SNPs_68068 0 0 0 0 1 WSCD1 chr17:5998422 3'AG 5998422 Downstream 20bp
chr17 8167859 8167859 1 + G T UCEC 8167857 + 8167837 8167877 41 CCCCAGGGCTGAGCGTGCACCAGGCTCTGGAGAGGGTTCTG CCCCAGGGCTGAGCGTGCACCATGCTCTGGAGAGGGTTCTG < 41bp 0.7426298694645 0.381490324849364 0.4789782 0.070825934 prediction 0.485259738929001 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8167857 chr17:8167859 nonsynonymous SNV 0.188 1 23 hm5C_associated_SNPs_68069 0 0 1 0 2 PFAS chr17:8167788 3'AG 8167788 Downstream 72bp
chr17 8167859 8167859 1 + G T UCEC 8167857 + 8167837 8167877 41 CCCCAGGGCTGAGCGTGCACCAGGCTCTGGAGAGGGTTCTG CCCCAGGGCTGAGCGTGCACCATGCTCTGGAGAGGGTTCTG < 41bp 0.7426298694645 0.381490324849364 0.4789782 0.070825934 prediction 0.485259738929001 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8167857 chr17:8167859 nonsynonymous SNV 0.188 1 23 hm5C_associated_SNPs_68069 0 0 1 0 2 PFAS chr17:8167919 5'GT 8167919 Upstream 61bp
chr1 17603067 17603067 1 + A C COAD 17603063 + 17603043 17603083 41 TGCGGGACTTCCTCCATGCCCAGAAGGTGCAGCCCCCCGTG TGCGGGACTTCCTCCATGCCCAGACGGTGCAGCCCCCCGTG < 41bp 0.928062489631259 0.685436181809527 0.7576134 0.7545943 prediction 0.485252615643465 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17603063 chr1:17603067 nonsynonymous SNV 0.703 1 25 hm5C_associated_SNPs_68072 0 0 0 0 2 PADI3 chr1:17603014 3'AG 17603014 Downstream 54bp
chr1 17603067 17603067 1 + A C COAD 17603063 + 17603043 17603083 41 TGCGGGACTTCCTCCATGCCCAGAAGGTGCAGCCCCCCGTG TGCGGGACTTCCTCCATGCCCAGACGGTGCAGCCCCCCGTG < 41bp 0.928062489631259 0.685436181809527 0.7576134 0.7545943 prediction 0.485252615643465 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17603063 chr1:17603067 nonsynonymous SNV 0.703 1 25 hm5C_associated_SNPs_68072 0 0 0 0 2 PADI3 chr1:17603158 5'GT 17603158 Upstream 92bp
chr5 135186164 135186164 1 + C T BRCA 135186162 + 135186142 135186182 41 GAAACACCCTCAGCTGCATCCGCGTGGTGTACAGGAGGGAG GAAACACCCTCAGCTGCATCCGTGTGGTGTACAGGAGGGAG < 41bp 0.742622214155146 0.472142493245249 0.4141211 0.31333873 prediction 0.485244428310293 Functional Loss - SLC25A48 ENSG00000145832 CDS Human protein_coding chr5:135186162 chr5:135186164 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_68073 0 0 0 0 1 SLC25A48 chr5:135186114 3'AG 135186114 Downstream 51bp
chr12 15739956 15739956 1 + G T HNSC 15739953 + 15739933 15739973 41 ATGGTCCGACAGCAAGCTACCAAGAGCAAAGGTCCCATGAT ATGGTCCGACAGCAAGCTACCAATAGCAAAGGTCCCATGAT < 41bp 0.742617929318911 0.362658698095809 0.70672905 0.050241858 prediction 0.485235858637823 Functional Loss - PTPRO ENSG00000151490 CDS Human protein_coding chr12:15739953 chr12:15739956 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_68074 0 0 0 0 1 PTPRO chr12:15739985 5'GT 15739985 Upstream 30bp
chr3 186570917 186570917 1 + G T UCEC 186570914 + 186570894 186570934 41 ATGACCAGGAAACCACGACTCAAGGGCCCGGAGTCCTGCTT ATGACCAGGAAACCACGACTCAATGGCCCGGAGTCCTGCTT < 41bp 0.906184275434125 0.663579301072988 0.904361 0.6973202 prediction 0.485209948722274 Functional Loss - ADIPOQ ENSG00000181092 CDS Human antisense chr3:186570914 chr3:186570917 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_68077 0 0 0 0 1 ADIPOQ-AS1 chr3:186570840 3'AG 186570840 Downstream 78bp
chrX 19375832 19375832 1 + A C STAD 19375828 + 19375808 19375848 41 CGGACACAGTATGAGTGACCCTGGAGTCAGGTACGCTCATG CGGACACAGTATGAGTGACCCTGGCGTCAGGTACGCTCATG < 41bp 0.92903189430862 0.686428106777633 0.21027815 0.25711226 prediction 0.485207575061974 Functional Loss - PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19375828 chrX:19375832 synonymous SNV . 0 25 hm5C_associated_SNPs_68078 0 0 1 0 2 PDHA1 chrX:19375770 3'AG 19375770 Downstream 63bp
chrX 19375832 19375832 1 + A C STAD 19375828 + 19375808 19375848 41 CGGACACAGTATGAGTGACCCTGGAGTCAGGTACGCTCATG CGGACACAGTATGAGTGACCCTGGCGTCAGGTACGCTCATG < 41bp 0.92903189430862 0.686428106777633 0.21027815 0.25711226 prediction 0.485207575061974 Functional Loss - PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19375828 chrX:19375832 synonymous SNV . 0 25 hm5C_associated_SNPs_68078 0 0 1 0 2 PDHA1 chrX:19375837 5'GT 19375837 Upstream 6bp
chr12 102542066 102542066 1 + T C UCEC 102542065 + 102542045 102542085 41 TATTGACATGGAAATACTTGCTCCATGAGAAATTGAACTTA TATTGACATGGAAATACTTGCCCCATGAGAAATTGAACTTA < 41bp 0.762402235280123 0.519811236062126 0.9284493 0.23426163 prediction 0.485181998435993 Functional Loss - PARPBP ENSG00000185480 CDS Human protein_coding chr12:102542065 chr12:102542066 nonsynonymous SNV 0.949 3 22 hm5C_associated_SNPs_68084 0 0 1 0 2 PARPBP chr12:102542008 3'AG 102542008 Downstream 59bp
chr12 102542066 102542066 1 + T C UCEC 102542065 + 102542045 102542085 41 TATTGACATGGAAATACTTGCTCCATGAGAAATTGAACTTA TATTGACATGGAAATACTTGCCCCATGAGAAATTGAACTTA < 41bp 0.762402235280123 0.519811236062126 0.9284493 0.23426163 prediction 0.485181998435993 Functional Loss - PARPBP ENSG00000185480 CDS Human protein_coding chr12:102542065 chr12:102542066 nonsynonymous SNV 0.949 3 22 hm5C_associated_SNPs_68084 0 0 1 0 2 PARPBP chr12:102542013 3'AG 102542013 Downstream 54bp
chr12 110353251 110353251 1 + A C STAD 110353247 + 110353227 110353267 41 AGGCATGGGAAGCAGACCAGCAGGAGGAGGAGGAAGAGGAG AGGCATGGGAAGCAGACCAGCAGGCGGAGGAGGAAGAGGAG < 41bp 0.925295472424857 0.682705719350358 0.88630426 0.8772714 prediction 0.485179506148997 Functional Loss - TCHP ENSG00000139437 CDS Human protein_coding chr12:110353247 chr12:110353251 nonsynonymous SNV 0.987 0 25 hm5C_associated_SNPs_68085 0 0 1 0 1 TCHP chr12:110353208 3'AG 110353208 Downstream 44bp
chrX 153418422 153418422 1 + G A UCEC 153418419 + 153418399 153418439 41 TGCTCTCCCCATAGGGATCACAGGTCTCTGGTCTCTGGCCA TGCTCTCCCCATAGGGATCACAGATCTCTGGTCTCTGGCCA < 41bp 0.762152284875795 0.519568742108391 0.3550576 0.26867288 prediction 0.485167085534809 Functional Loss - OPN1LW ENSG00000102076 CDS Human protein_coding chrX:153418419 chrX:153418422 nonsynonymous SNV 0.889 4 24 hm5C_associated_SNPs_68086 0 0 0 0 1 OPN1LW chrX:153418413 3'AG 153418413 Downstream 10bp
chr13 113975922 113975922 1 + G C UCEC 113975918 + 113975898 113975938 41 TCCCTGCGAGCGCTGCAGGCCACAGTCGGCAATTCCTACAA TCCCTGCGAGCGCTGCAGGCCACACTCGGCAATTCCTACAA < 41bp 0.742577797680125 0.457202217501378 0.027018338 0.0033216476 prediction 0.485155595360249 Functional Loss - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113975918 chr13:113975922 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_68088 0 0 1 0 1 LAMP1 chr13:113975872 3'AG 113975872 Downstream 51bp
chr1 2237542 2237542 1 + G A rs146789646 2237539 + 2237519 2237559 41 CGTAACCTGCGGAAGGAGATCGAGCGTCTCCGCGCCGAGAA CGTAACCTGCGGAAGGAGATCGAACGTCTCCGCGCCGAGAA < 41bp 0.754194829649244 0.511620398338513 0.89494634 0.4171709 prediction 0.485148862621461 Functional Loss - SKI ENSG00000157933 CDS Human protein_coding chr1:2237539 chr1:2237542 synonymous SNV . 0 24 hm5C_associated_SNPs_68093 2 0 1 0 1 SKI chr1:2237459 3'AG 2237459 Downstream 84bp
chr1 118483785 118483785 1 + G T LAML 118483783 + 118483763 118483803 41 GAAAAGCTGGTTCCATAATGCGGGAAGGAAGAGACAGAGTT GAAAAGCTGGTTCCATAATGCGTGAAGGAAGAGACAGAGTT < 41bp 0.873496866773338 0.630934541161279 0.2801777 0.06923589 prediction 0.485124651224119 Functional Loss - WDR3 ENSG00000065183 CDS Human protein_coding chr1:118483783 chr1:118483785 synonymous SNV . 0 23 hm5C_associated_SNPs_68098 0 0 1 0 2 WDR3 chr1:118483747 3'AG 118483747 Downstream 39bp
chr1 118483785 118483785 1 + G T LAML 118483783 + 118483763 118483803 41 GAAAAGCTGGTTCCATAATGCGGGAAGGAAGAGACAGAGTT GAAAAGCTGGTTCCATAATGCGTGAAGGAAGAGACAGAGTT < 41bp 0.873496866773338 0.630934541161279 0.2801777 0.06923589 prediction 0.485124651224119 Functional Loss - WDR3 ENSG00000065183 CDS Human protein_coding chr1:118483783 chr1:118483785 synonymous SNV . 0 23 hm5C_associated_SNPs_68098 0 0 1 0 2 WDR3 chr1:118483848 5'GT 118483848 Upstream 64bp
chr3 12623650 12623650 1 + G T SKCM 12623647 + 12623627 12623667 41 GTGCGGCTCTGGGATTTCATCGAGAACCGAGAAAGCCGGCA GTGCGGCTCTGGGATTTCATCGATAACCGAGAAAGCCGGCA < 41bp 0.913971820544585 0.671417545098921 0.8521633 0.27823085 prediction 0.485108550891329 Functional Loss - MKRN2 ENSG00000075975 CDS Human protein_coding chr3:12623647 chr3:12623650 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_68102 0 0 1 0 1 MKRN2 chr3:12623615 3'AG 12623615 Downstream 36bp
chr6 7559514 7559514 1 + C T BLCA 7559512 + 7559492 7559532 41 TTATAAAGCCATCAGTGTCCCTCGAGTCCGCAGGGCCAGCT TTATAAAGCCATCAGTGTCCCTTGAGTCCGCAGGGCCAGCT < 41bp 0.828379056407998 0.585828349330583 0.36260703 0.12992877 prediction 0.485101414154829 Functional Loss - DSP ENSG00000096696 CDS Human protein_coding chr6:7559512 chr6:7559514 stopgain 0.997 1 23 hm5C_associated_SNPs_68103 3 0 1 0 1 DSP chr6:7559459 3'AG 7559459 Downstream 56bp
chr17 27014467 27014467 1 + G A GBM 27014464 + 27014444 27014484 41 GTATGTTTGTGGCCTGGGACCTCGGAAAGGGACCCACCTCC GTATGTTTGTGGCCTGGGACCTCAGAAAGGGACCCACCTCC < 41bp 0.745673189210977 0.503126789885922 0.3627631 0.09505594 prediction 0.48509279865011 Functional Loss - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27014464 chr17:27014467 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_68105 0 0 1 0 1 SUPT6H chr17:27014489 5'GT 27014489 Upstream 23bp
chr12 56214131 56214131 1 + G C STAD 56214127 + 56214107 56214147 41 ATTGCTAAGTGTACTGCTGCCGAAGTTGCCCCAGTTCCATG ATTGCTAAGTGTACTGCTGCCGAACTTGCCCCAGTTCCATG < 41bp 0.742542265823021 0.468305836960366 0.3305838 0.06989375 prediction 0.485084531646042 Functional Loss - ORMDL2 ENSG00000123353;ENSG00000257390 CDS Human protein_coding chr12:56214127 chr12:56214131 nonsynonymous SNV 0.990 2 25 hm5C_associated_SNPs_68106 0 0 1 0 1 ORMDL2 chr12:56214044 3'AG 56214044 Downstream 88bp
chr7 99817562 99817562 1 + T C COAD 99817561 + 99817541 99817581 41 CAGAGGCACAGGTGCCGGCCCTGCAGCCCCCAGAACCTGGA CAGAGGCACAGGTGCCGGCCCCGCAGCCCCCAGAACCTGGA < 41bp 0.749112050271609 0.506570275630426 0.35047284 0.1747176 prediction 0.485083549282366 Functional Loss - PVRIG ENSG00000213413 CDS Human protein_coding chr7:99817561 chr7:99817562 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_68108 0 0 0 0 1 PVRIG chr7:99817651 5'GT 99817651 Upstream 90bp
chr16 28914425 28914425 1 + C T LUSC 28914423 + 28914403 28914443 41 CTGCTGGGCTCCATCTGCCTCTCCATGTCCCTGCACTTCCT CTGCTGGGCTCCATCTGCCTCTTCATGTCCCTGCACTTCCT < 41bp 0.742530907967269 0.440400607771273 0.9665618 0.08087844 prediction 0.485061815934539 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28914423 chr16:28914425 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_68110 0 0 0 0 2 ATP2A1 chr16:28914351 3'AG 28914351 Downstream 75bp
chr16 28914425 28914425 1 + C T LUSC 28914423 + 28914403 28914443 41 CTGCTGGGCTCCATCTGCCTCTCCATGTCCCTGCACTTCCT CTGCTGGGCTCCATCTGCCTCTTCATGTCCCTGCACTTCCT < 41bp 0.742530907967269 0.440400607771273 0.9665618 0.08087844 prediction 0.485061815934539 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28914423 chr16:28914425 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_68110 0 0 0 0 2 ATP2A1 chr16:28914468 5'GT 28914468 Upstream 44bp
chr6 147525724 147525724 1 + C T SKCM 147525722 + 147525702 147525742 41 GGCCTGACCGCCGGCTCGTCCTCGGCGTCGCAGCAGCAACA GGCCTGACCGCCGGCTCGTCCTTGGCGTCGCAGCAGCAACA < 41bp 0.768531232076487 0.526008291724901 0.44464675 0.089835405 prediction 0.485045880703172 Functional Loss - STXBP5 ENSG00000164506 CDS Human protein_coding chr6:147525722 chr6:147525724 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_68113 0 0 1 0 1 STXBP5 chr6:147525818 5'GT 147525818 Upstream 95bp
chr17 31323916 31323916 1 + G T LUAD 31323913 + 31323893 31323933 41 AACGCAGCTGCTTTGGACTACGAGGCTGATGGGAGCACCAA AACGCAGCTGCTTTGGACTACGATGCTGATGGGAGCACCAA < 41bp 0.742513041602174 0.343763618876821 0.8067335 0.26689127 prediction 0.485026083204347 Functional Loss - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31323913 chr17:31323916 nonsynonymous SNV 0.976 0 24 hm5C_associated_SNPs_68117 0 0 0 0 2 SPACA3 chr17:31323839 3'AG 31323839 Downstream 78bp
chr17 31323916 31323916 1 + G T LUAD 31323913 + 31323893 31323933 41 AACGCAGCTGCTTTGGACTACGAGGCTGATGGGAGCACCAA AACGCAGCTGCTTTGGACTACGATGCTGATGGGAGCACCAA < 41bp 0.742513041602174 0.343763618876821 0.8067335 0.26689127 prediction 0.485026083204347 Functional Loss - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31323913 chr17:31323916 nonsynonymous SNV 0.976 0 24 hm5C_associated_SNPs_68117 0 0 0 0 2 SPACA3 chr17:31323861 3'AG 31323861 Downstream 56bp
chr1 26156151 26156151 1 + A C SKCM 26156150 + 26156130 26156170 41 GGTGGAGGTCCCTGAGCTTCCATCAGTCCCCCTGCTTTGTT GGTGGAGGTCCCTGAGCTTCCCTCAGTCCCCCTGCTTTGTT < 41bp 0.742501334749716 0.493516661151375 0.41542763 0.24914184 prediction 0.485002669499432 Functional Loss - MTFR1L ENSG00000117640 CDS Human protein_coding chr1:26156150 chr1:26156151 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_68119 0 0 1 0 1 MTFR1L chr1:26156109 3'AG 26156109 Downstream 43bp
chr1 247608040 247608040 1 + G T HNSC 247608038 + 247608018 247608058 41 AGAGCCTGCGAAAGCTGAGCCTGGGCAACAATGACCTGGGC AGAGCCTGCGAAAGCTGAGCCTTGGCAACAATGACCTGGGC < 41bp 0.742487029929826 0.393011204845932 0.51537204 0.14187694 prediction 0.484974059859653 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247608038 chr1:247608040 synonymous SNV . 0 23 hm5C_associated_SNPs_68122 0 0 0 0 2 NLRP3 chr1:247607953 3'AG 247607953 Downstream 88bp
chr1 247608040 247608040 1 + G T HNSC 247608038 + 247608018 247608058 41 AGAGCCTGCGAAAGCTGAGCCTGGGCAACAATGACCTGGGC AGAGCCTGCGAAAGCTGAGCCTTGGCAACAATGACCTGGGC < 41bp 0.742487029929826 0.393011204845932 0.51537204 0.14187694 prediction 0.484974059859653 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247608038 chr1:247608040 synonymous SNV . 0 23 hm5C_associated_SNPs_68122 0 0 0 0 2 NLRP3 chr1:247608123 5'GT 247608123 Upstream 84bp
chr14 68191292 68191292 1 + A C LUSC 68191288 + 68191268 68191308 41 GGGCATTGGCAAGGAGACGGCCAGAGAGCTCGCTAGCCGAG GGGCATTGGCAAGGAGACGGCCAGCGAGCTCGCTAGCCGAG < 41bp 0.742485873032199 0.337451164273771 0.35653102 0.15783489 prediction 0.484971746064399 Functional Loss - RDH12 ENSG00000139988 CDS Human protein_coding chr14:68191288 chr14:68191292 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_68123 0 0 0 0 1 RDH12 chr14:68191308 5'GT 68191308 Upstream 17bp
chr12 64173835 64173835 1 + G C LUAD 64173831 + 64173811 64173851 41 CCTACCACGTCTTCTTCGGGCGCCGCCGCCAGGCGCCGGCC CCTACCACGTCTTCTTCGGGCGCCCCCGCCAGGCGCCGGCC < 41bp 0.829215088908446 0.586729843788157 0.25926322 0.091873914 prediction 0.484970490240578 Functional Loss - TMEM5 ENSG00000118600 CDS Human protein_coding chr12:64173831 chr12:64173835 nonsynonymous SNV 0.882 2 25 hm5C_associated_SNPs_68124 0 0 1 0 1 TMEM5 chr12:64173909 5'GT 64173909 Upstream 75bp
chr10 46998904 46998904 1 + G T LUSC 46998902 + 46998882 46998922 41 TGAGCTCCAGCCGCCCCGAGCCGGGTCCCTGGGCACCCCTG TGAGCTCCAGCCGCCCCGAGCCTGGTCCCTGGGCACCCCTG < 41bp 0.742476529605979 0.380512206066853 0.9125494 0.45381385 prediction 0.484953059211958 Functional Loss - GPRIN2 ENSG00000204175 CDS Human protein_coding chr10:46998902 chr10:46998904 synonymous SNV . 0 23 hm5C_associated_SNPs_68126 0 0 0 0 1 GPRIN2 chr10:46998875 3'AG 46998875 Downstream 30bp
chrX 153551620 153551620 1 + G A LUAD 153551617 + 153551597 153551637 41 TTCCGAACCATTCCCAAGTGCACGATCTTCTACCCAACTGA TTCCGAACCATTCCCAAGTGCACAATCTTCTACCCAACTGA < 41bp 0.751906264627152 0.509435534752441 0.055685848 0.04046607 prediction 0.484941459749421 Functional Loss - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153551617 chrX:153551620 synonymous SNV . 0 24 hm5C_associated_SNPs_68129 0 0 0 0 2 TKTL1 chrX:153551553 3'AG 153551553 Downstream 68bp
chrX 153551620 153551620 1 + G A LUAD 153551617 + 153551597 153551637 41 TTCCGAACCATTCCCAAGTGCACGATCTTCTACCCAACTGA TTCCGAACCATTCCCAAGTGCACAATCTTCTACCCAACTGA < 41bp 0.751906264627152 0.509435534752441 0.055685848 0.04046607 prediction 0.484941459749421 Functional Loss - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153551617 chrX:153551620 synonymous SNV . 0 24 hm5C_associated_SNPs_68129 0 0 0 0 2 TKTL1 chrX:153551683 5'GT 153551683 Upstream 64bp
chr19 55420628 55420628 1 + C T BLCA 55420626 + 55420606 55420646 41 ATGTATGACACACCCACCCTCTCGGTTCATCCTGGACCCGA ATGTATGACACACCCACCCTCTTGGTTCATCCTGGACCCGA < 41bp 0.808802688653308 0.566338463946025 0.056890965 0.123628944 prediction 0.484928449414566 Functional Loss - NCR1 ENSG00000189430 CDS Human protein_coding chr19:55420626 chr19:55420628 nonsynonymous SNV 0.059 0 23 hm5C_associated_SNPs_68132 0 0 0 0 1 NCR1 chr19:55420604 3'AG 55420604 Downstream 25bp
chr12 113530994 113530994 1 + G T LUAD 113530991 + 113530971 113531011 41 CCCGCACTCCCGGTGAAGAACTTGAATGGTACTGGGCCGGT CCCGCACTCCCGGTGAAGAACTTTAATGGTACTGGGCCGGT < 41bp 0.783649784526669 0.541187866589746 0.7022895 0.44251254 prediction 0.484923835873847 Functional Loss - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113530991 chr12:113530994 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_68135 0 0 0 0 1 DTX1 chr12:113531028 5'GT 113531028 Upstream 35bp
chr11 61536759 61536759 1 + G A UCEC 61536756 + 61536736 61536776 41 CTGCCGGACTCTCCCCCAGACTCGGGCTCCGAGGCCTACTC CTGCCGGACTCTCCCCCAGACTCAGGCTCCGAGGCCTACTC < 41bp 0.743604434050601 0.501150364984011 0.6119041 0.32258317 prediction 0.484908138133181 Functional Loss - MYRF ENSG00000124920 CDS Human protein_coding chr11:61536756 chr11:61536759 synonymous SNV . 0 24 hm5C_associated_SNPs_68137 0 0 1 0 2 MYRF chr11:61536732 3'AG 61536732 Downstream 28bp
chr11 61536759 61536759 1 + G A UCEC 61536756 + 61536736 61536776 41 CTGCCGGACTCTCCCCCAGACTCGGGCTCCGAGGCCTACTC CTGCCGGACTCTCCCCCAGACTCAGGCTCCGAGGCCTACTC < 41bp 0.743604434050601 0.501150364984011 0.6119041 0.32258317 prediction 0.484908138133181 Functional Loss - MYRF ENSG00000124920 CDS Human protein_coding chr11:61536756 chr11:61536759 synonymous SNV . 0 24 hm5C_associated_SNPs_68137 0 0 1 0 2 MYRF chr11:61536793 5'GT 61536793 Upstream 35bp
chr20 43042402 43042402 1 + A T BRCA 43042398 + 43042378 43042418 41 TATGAGGACAGCAGCCTGCCCTCCATCAATGCGCTCCTGCA TATGAGGACAGCAGCCTGCCCTCCTTCAATGCGCTCCTGCA < 41bp 0.742448255743922 0.388088837177882 0.9591664 0.14281139 prediction 0.484896511487845 Functional Loss - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43042398 chr20:43042402 nonsynonymous SNV 0.976 3 25 hm5C_associated_SNPs_68139 0 0 1 0 2 HNF4A chr20:43042334 3'AG 43042334 Downstream 69bp
chr20 43042402 43042402 1 + A T BRCA 43042398 + 43042378 43042418 41 TATGAGGACAGCAGCCTGCCCTCCATCAATGCGCTCCTGCA TATGAGGACAGCAGCCTGCCCTCCTTCAATGCGCTCCTGCA < 41bp 0.742448255743922 0.388088837177882 0.9591664 0.14281139 prediction 0.484896511487845 Functional Loss - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43042398 chr20:43042402 nonsynonymous SNV 0.976 3 25 hm5C_associated_SNPs_68139 0 0 1 0 2 HNF4A chr20:43042440 5'GT 43042440 Upstream 39bp
chr2 27728588 27728588 1 + G A SKCM 27728585 + 27728565 27728605 41 GGGTGTCTTCACCTCTTCAGCCCGAGGGTCTCAGCGGCTCC GGGTGTCTTCACCTCTTCAGCCCAAGGGTCTCAGCGGCTCC < 41bp 0.752011462345348 0.509567357775507 0.17356527 0.11035481 prediction 0.484888209139683 Functional Loss - GCKR ENSG00000084734 CDS Human protein_coding chr2:27728585 chr2:27728588 nonsynonymous SNV 0.545 5 24 hm5C_associated_SNPs_68140 0 0 1 0 1 GCKR chr2:27728585 3'AG 27728585 Downstream 4bp
chr11 994111 994111 1 + G T SKCM 994108 + 994088 994128 41 AGATGCCCCCATTCCCGGAGCGGGAGTCCTCCATCTTGGCA AGATGCCCCCATTCCCGGAGCGGTAGTCCTCCATCTTGGCA < 41bp 0.742436888192087 0.335203536810697 0.9376018 0.53212446 prediction 0.484873776384175 Functional Loss - AP2A2 ENSG00000183020 CDS Human protein_coding chr11:994108 chr11:994111 stopgain 0.813 1 24 hm5C_associated_SNPs_68142 0 0 1 0 1 AP2A2 chr11:994072 3'AG 994072 Downstream 40bp
chr8 61496823 61496823 1 + A C UCEC 61496819 + 61496799 61496839 41 GTCGTATTACAGAGGTGCAGCAGGAGCTTTACTAGTTTACG GTCGTATTACAGAGGTGCAGCAGGCGCTTTACTAGTTTACG < 41bp 0.742425181700587 0.342653851483269 0.30854678 0.30924475 prediction 0.484850363401174 Functional Loss - RAB2A ENSG00000104388 CDS Human protein_coding chr8:61496819 chr8:61496823 synonymous SNV . 0 25 hm5C_associated_SNPs_68147 0 0 1 0 2 RAB2A chr8:61496767 3'AG 61496767 Downstream 57bp
chr8 61496823 61496823 1 + A C UCEC 61496819 + 61496799 61496839 41 GTCGTATTACAGAGGTGCAGCAGGAGCTTTACTAGTTTACG GTCGTATTACAGAGGTGCAGCAGGCGCTTTACTAGTTTACG < 41bp 0.742425181700587 0.342653851483269 0.30854678 0.30924475 prediction 0.484850363401174 Functional Loss - RAB2A ENSG00000104388 CDS Human protein_coding chr8:61496819 chr8:61496823 synonymous SNV . 0 25 hm5C_associated_SNPs_68147 0 0 1 0 2 RAB2A chr8:61496849 5'GT 61496849 Upstream 27bp
chr9 133574728 133574728 1 + G T LAML 133574726 + 133574706 133574746 41 TGTATTTCAGAGGAGAAGATCTGCAGAAGATGAGCTTGCAA TGTATTTCAGAGGAGAAGATCTTCAGAAGATGAGCTTGCAA < 41bp 0.742424023233075 0.418646810944047 0.4973089 0.77667 prediction 0.484848046466151 Functional Loss - EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133574726 chr9:133574728 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_68150 0 0 1 1 1 EXOSC2 chr9:133574716 3'AG 133574716 Downstream 13bp
chr5 908535 908535 1 + C T HNSC 908533 + 908513 908553 41 CCGAGCCATCAGATGCCATCCGCGTGGTCAATGCTGTCTTG CCGAGCCATCAGATGCCATCCGTGTGGTCAATGCTGTCTTG < 41bp 0.82188448351303 0.579460919789963 0.5005399 0.24254203 prediction 0.484847127446135 Functional Loss - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908533 chr5:908535 synonymous SNV . 0 23 hm5C_associated_SNPs_68151 0 0 1 0 2 TRIP13 chr5:908470 3'AG 908470 Downstream 66bp
chr5 908535 908535 1 + C T HNSC 908533 + 908513 908553 41 CCGAGCCATCAGATGCCATCCGCGTGGTCAATGCTGTCTTG CCGAGCCATCAGATGCCATCCGTGTGGTCAATGCTGTCTTG < 41bp 0.82188448351303 0.579460919789963 0.5005399 0.24254203 prediction 0.484847127446135 Functional Loss - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908533 chr5:908535 synonymous SNV . 0 23 hm5C_associated_SNPs_68151 0 0 1 0 2 TRIP13 chr5:908576 5'GT 908576 Upstream 42bp
chr12 4835910 4835910 1 + G A SKCM 4835907 + 4835887 4835927 41 AGGCCCAGCAGAAGGCGGCCCAGGACCTCTTCCGGAAGTTT AGGCCCAGCAGAAGGCGGCCCAGAACCTCTTCCGGAAGTTT < 41bp 0.754394976241755 0.5119757604159 0.3319164 0.2134709 prediction 0.484838431651709 Functional Loss - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4835907 chr12:4835910 nonsynonymous SNV 0.444 0 24 hm5C_associated_SNPs_68152 0 0 0 0 1 GALNT8 chr12:4835995 5'GT 4835995 Upstream 86bp
chr11 113846069 113846069 1 + G T SARC 113846066 + 113846046 113846086 41 CTATGCTGCTGTGGGTCCAGCAGGCGCTGCTCGCCTTGCTC CTATGCTGCTGTGGGTCCAGCAGTCGCTGCTCGCCTTGCTC < 41bp 0.742417909854294 0.328805185294327 0.9161469 0.38659737 prediction 0.484835819708588 Functional Loss - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113846066 chr11:113846069 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_68153 0 0 0 0 1 HTR3A chr11:113846114 5'GT 113846114 Upstream 46bp
chr11 113846067 113846067 1 + A C STAD 113846066 + 113846046 113846086 41 CTATGCTGCTGTGGGTCCAGCAGGCGCTGCTCGCCTTGCTC CTATGCTGCTGTGGGTCCAGCCGGCGCTGCTCGCCTTGCTC < 41bp 0.742417909854294 0.483392956422048 0.9161469 0.8956767 prediction 0.484835819708588 Functional Loss - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113846066 chr11:113846067 nonsynonymous SNV 0.012 0 22 hm5C_associated_SNPs_68154 0 0 0 0 1 HTR3A chr11:113846114 5'GT 113846114 Upstream 48bp
chr11 111856033 111856033 1 + C T rs34966520 111856031 + 111856011 111856051 41 TCTGTGAACCAGGTGTCAATCCCGAGGAACAACTGGTGAGC TCTGTGAACCAGGTGTCAATCCTGAGGAACAACTGGTGAGC < 41bp 0.836071679179457 0.593666359741409 0.38513595 0.2372478 prediction 0.484810638876096 Functional Loss - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111856031 chr11:111856033 synonymous SNV . 0 23 hm5C_associated_SNPs_68155 0 0 1 0 2 DIXDC1 chr11:111855956 3'AG 111855956 Downstream 78bp
chr11 111856033 111856033 1 + C T rs34966520 111856031 + 111856011 111856051 41 TCTGTGAACCAGGTGTCAATCCCGAGGAACAACTGGTGAGC TCTGTGAACCAGGTGTCAATCCTGAGGAACAACTGGTGAGC < 41bp 0.836071679179457 0.593666359741409 0.38513595 0.2372478 prediction 0.484810638876096 Functional Loss - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111856031 chr11:111856033 synonymous SNV . 0 23 hm5C_associated_SNPs_68155 0 0 1 0 2 DIXDC1 chr11:111856045 5'GT 111856045 Upstream 13bp
chr14 24879316 24879316 1 + C T KICH 24879314 + 24879294 24879334 41 TGACCAGCTTCCAGAGGTACCACGAGGCCCTGAATACACCC TGACCAGCTTCCAGAGGTACCATGAGGCCCTGAATACACCC < 41bp 0.798847259746516 0.556444569992552 0.8343638 0.38245288 prediction 0.484805379507927 Functional Loss - NYNRIN ENSG00000205978 CDS Human protein_coding chr14:24879314 chr14:24879316 synonymous SNV . 0 23 hm5C_associated_SNPs_68157 0 0 0 0 1 NYNRIN chr14:24879414 5'GT 24879414 Upstream 99bp
chr5 7520927 7520927 1 + G T SARC 7520925 + 7520905 7520945 41 ATGCGAGACGCCATCATTGCCAGCGTCCTCACCTCCTCCTC ATGCGAGACGCCATCATTGCCATCGTCCTCACCTCCTCCTC < 41bp 0.742401907355666 0.401164231476034 0.8968197 0.14962432 prediction 0.484803814711332 Functional Loss - ADCY2 ENSG00000078295 CDS Human protein_coding chr5:7520925 chr5:7520927 nonsynonymous SNV 0.977 2 23 hm5C_associated_SNPs_68158 0 0 0 0 2 ADCY2 chr5:7520851 3'AG 7520851 Downstream 77bp
chr5 7520927 7520927 1 + G T SARC 7520925 + 7520905 7520945 41 ATGCGAGACGCCATCATTGCCAGCGTCCTCACCTCCTCCTC ATGCGAGACGCCATCATTGCCATCGTCCTCACCTCCTCCTC < 41bp 0.742401907355666 0.401164231476034 0.8968197 0.14962432 prediction 0.484803814711332 Functional Loss - ADCY2 ENSG00000078295 CDS Human protein_coding chr5:7520925 chr5:7520927 nonsynonymous SNV 0.977 2 23 hm5C_associated_SNPs_68158 0 0 0 0 2 ADCY2 chr5:7521012 5'GT 7521012 Upstream 86bp
chr3 189604245 189604245 1 + G T SARC 189604243 + 189604223 189604263 41 CCACCTCTGAACAAAATGAACAGCATGAACAAGCTGCCTTC CCACCTCTGAACAAAATGAACATCATGAACAAGCTGCCTTC < 41bp 0.742385289501921 0.419049185822809 0.07414234 0.027891845 prediction 0.484770579003842 Functional Loss - TP63 ENSG00000073282 CDS Human protein_coding chr3:189604243 chr3:189604245 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_68162 0 0 0 0 2 TP63 chr3:189604183 3'AG 189604183 Downstream 63bp
chr3 189604245 189604245 1 + G T SARC 189604243 + 189604223 189604263 41 CCACCTCTGAACAAAATGAACAGCATGAACAAGCTGCCTTC CCACCTCTGAACAAAATGAACATCATGAACAAGCTGCCTTC < 41bp 0.742385289501921 0.419049185822809 0.07414234 0.027891845 prediction 0.484770579003842 Functional Loss - TP63 ENSG00000073282 CDS Human protein_coding chr3:189604243 chr3:189604245 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_68162 0 0 0 0 2 TP63 chr3:189604340 5'GT 189604340 Upstream 96bp
chr20 3728929 3728929 1 + G A LIHC 3728926 + 3728906 3728946 41 GCCCTGGAGCCCGAGGCCGCCTCGGTATACTGCCGCAAGCT GCCCTGGAGCCCGAGGCCGCCTCAGTATACTGCCGCAAGCT < 41bp 0.749230174423532 0.506851064551139 0.26024538 0.21075547 prediction 0.484758219744788 Functional Loss - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3728926 chr20:3728929 synonymous SNV . 0 24 hm5C_associated_SNPs_68163 0 0 0 0 1 HSPA12B chr20:3728864 3'AG 3728864 Downstream 66bp
chr9 136323095 136323095 1 + C T rs375824927 136323093 + 136323073 136323113 41 AGCCCCTCGCTGAGTCCAGCCACGAGTAATGCAGGGGGCTG AGCCCCTCGCTGAGTCCAGCCATGAGTAATGCAGGGGGCTG < 41bp 0.769012407182978 0.526638030106075 0.37417588 0.34214234 prediction 0.484748754153807 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136323093 chr9:136323095 nonsynonymous SNV 0.023 0 23 hm5C_associated_SNPs_68164 0 0 0 0 1 ADAMTS13 chr9:136323032 3'AG 136323032 Downstream 64bp
chr1 156863617 156863617 1 + G T rs4661072 156863614 + 156863594 156863634 41 ACCCCAGGCCGCAGGGGAGACGGGGCCCCAAGGCAGGTGAG ACCCCAGGCCGCAGGGGAGACGGTGCCCCAAGGCAGGTGAG < 41bp 0.789936411507545 0.547562648313044 0.91544133 0.8093685 prediction 0.484747526389001 Functional Loss - PEAR1 ENSG00000187800 UTR5 Human protein_coding chr1:156863614 chr1:156863617 . . 0 24 hm5C_associated_SNPs_68165 0 0 0 0 1 PEAR1 chr1:156863629 5'GT 156863629 Upstream 13bp
chr14 76905730 76905730 1 + T C LUAD 76905729 + 76905709 76905749 41 GACAGGCACCTGGGCTCCAGCTGCGGCTCCTTCATCAAGAC GACAGGCACCTGGGCTCCAGCCGCGGCTCCTTCATCAAGAC < 41bp 0.747454001822282 0.505081022270705 0.29600567 0.8217741 prediction 0.484745959103154 Functional Loss - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76905729 chr14:76905730 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_68167 0 0 0 0 1 ESRRB chr14:76905684 3'AG 76905684 Downstream 47bp
chr4 651266 651266 1 + G C LUSC 651265 + 651245 651285 41 CACGTGAAGTGCGACAGGGACGAGATCCAGCTCATCCTGGT CACGTGAAGTGCGACAGGGACCAGATCCAGCTCATCCTGGT < 41bp 0.865626363525072 0.623254348873531 0.3391145 0.23322389 prediction 0.484744029303081 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:651265 chr4:651266 nonsynonymous SNV 0.886 3 22 hm5C_associated_SNPs_68168 0 0 0 0 1 PDE6B chr4:651283 5'GT 651283 Upstream 18bp
chr2 71892406 71892406 1 + G T LUSC 71892404 + 71892384 71892424 41 GGACAGACCGTGTAATGTTTCAGGATAAAGAATATTCCATT GGACAGACCGTGTAATGTTTCATGATAAAGAATATTCCATT < 41bp 0.742371381656439 0.458563481902506 0.9017738 0.096561015 prediction 0.484742763312878 Functional Loss - DYSF ENSG00000135636 CDS Human protein_coding chr2:71892404 chr2:71892406 nonsynonymous SNV 0.967 1 23 hm5C_associated_SNPs_68170 0 0 0 0 1 DYSF chr2:71892434 5'GT 71892434 Upstream 29bp
chr10 5493825 5493825 1 + T C BLCA 5493824 + 5493804 5493844 41 TAAAAGAGTTCGACCTCTGGCTCGTGTCACGTCCTTGGCAA TAAAAGAGTTCGACCTCTGGCCCGTGTCACGTCCTTGGCAA < 41bp 0.763258560751999 0.520889820375951 0.050006628 0.02218169 prediction 0.484737480752097 Functional Loss - NET1 ENSG00000173848 CDS Human protein_coding chr10:5493824 chr10:5493825 synonymous SNV . 0 22 hm5C_associated_SNPs_68171 0 0 1 0 2 NET1 chr10:5493793 3'AG 5493793 Downstream 33bp
chr10 5493825 5493825 1 + T C BLCA 5493824 + 5493804 5493844 41 TAAAAGAGTTCGACCTCTGGCTCGTGTCACGTCCTTGGCAA TAAAAGAGTTCGACCTCTGGCCCGTGTCACGTCCTTGGCAA < 41bp 0.763258560751999 0.520889820375951 0.050006628 0.02218169 prediction 0.484737480752097 Functional Loss - NET1 ENSG00000173848 CDS Human protein_coding chr10:5493824 chr10:5493825 synonymous SNV . 0 22 hm5C_associated_SNPs_68171 0 0 1 0 2 NET1 chr10:5493900 5'GT 5493900 Upstream 76bp
chr7 5331432 5331432 1 + C T SKCM 5331430 + 5331410 5331450 41 ATCAACCTGGCCGCTGTGGGCACCGTGGCCTTCGGCTGCAC ATCAACCTGGCCGCTGTGGGCATCGTGGCCTTCGGCTGCAC < 41bp 0.742368234911531 0.484794053349995 0.29955637 0.32186374 prediction 0.484736469823062 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5331430 chr7:5331432 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_68172 0 0 1 0 2 SLC29A4 chr7:5331361 3'AG 5331361 Downstream 72bp
chr7 5331432 5331432 1 + C T SKCM 5331430 + 5331410 5331450 41 ATCAACCTGGCCGCTGTGGGCACCGTGGCCTTCGGCTGCAC ATCAACCTGGCCGCTGTGGGCATCGTGGCCTTCGGCTGCAC < 41bp 0.742368234911531 0.484794053349995 0.29955637 0.32186374 prediction 0.484736469823062 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5331430 chr7:5331432 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_68172 0 0 1 0 2 SLC29A4 chr7:5331452 5'GT 5331452 Upstream 21bp
chr20 2381054 2381054 1 + G T LUAD 2381052 + 2381032 2381072 41 GACAAATACGTGGACTCCTTCGGGCGGACCCTGGAGGACCT GACAAATACGTGGACTCCTTCGTGCGGACCCTGGAGGACCT < 41bp 0.742368132428942 0.388504363099232 0.9218867 0.6084068 prediction 0.484736264857885 Functional Loss - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2381052 chr20:2381054 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_68173 0 0 0 0 1 TGM6 chr20:2381090 5'GT 2381090 Upstream 37bp
chr9 82323121 82323121 1 + G T LUSC 82323118 + 82323098 82323138 41 CCCAGGCAGTAACTCTACTCCCGGATTGAGGCCTGTACCTG CCCAGGCAGTAACTCTACTCCCGTATTGAGGCCTGTACCTG < 41bp 0.74235945071635 0.474575940164026 0.20675126 0.07430434 prediction 0.484718901432699 Functional Loss - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82323118 chr9:82323121 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_68175 0 0 1 0 2 TLE4 chr9:82323033 3'AG 82323033 Downstream 89bp
chr9 82323121 82323121 1 + G T LUSC 82323118 + 82323098 82323138 41 CCCAGGCAGTAACTCTACTCCCGGATTGAGGCCTGTACCTG CCCAGGCAGTAACTCTACTCCCGTATTGAGGCCTGTACCTG < 41bp 0.74235945071635 0.474575940164026 0.20675126 0.07430434 prediction 0.484718901432699 Functional Loss - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82323118 chr9:82323121 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_68175 0 0 1 0 2 TLE4 chr9:82323165 5'GT 82323165 Upstream 45bp
chrX 152686195 152686195 1 + G T READ 152686193 + 152686173 152686213 41 CACAAGGTGGCAAGGAGGGGCAGGCGGCGAGGTCGTCTGTG CACAAGGTGGCAAGGAGGGGCATGCGGCGAGGTCGTCTGTG < 41bp 0.742356750449806 0.396078542960215 0.90369666 0.77968466 prediction 0.484713500899613 Functional Loss - ZFP92 ENSG00000189420 CDS Human protein_coding chrX:152686193 chrX:152686195 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_68176 0 0 0 0 1 ZFP92 chrX:152686101 3'AG 152686101 Downstream 95bp
chr5 43651870 43651870 1 + G T ESCA 43651867 + 43651847 43651887 41 TTCTGGTGACTCAGAGAATGCTGGACATGTTCAAGCGTCCC TTCTGGTGACTCAGAGAATGCTGTACATGTTCAAGCGTCCC < 41bp 0.742354588333562 0.352413170024035 0.2952204 0.261808 prediction 0.484709176667124 Functional Loss - NNT ENSG00000112992 CDS Human protein_coding chr5:43651867 chr5:43651870 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_68177 0 0 0 0 1 NNT chr5:43651841 3'AG 43651841 Downstream 30bp
chr5 43651871 43651871 1 + A T UCEC 43651867 + 43651847 43651887 41 TTCTGGTGACTCAGAGAATGCTGGACATGTTCAAGCGTCCC TTCTGGTGACTCAGAGAATGCTGGTCATGTTCAAGCGTCCC < 41bp 0.742354588333562 0.405373128812771 0.2952204 0.301255 prediction 0.484709176667124 Functional Loss - NNT ENSG00000112992 CDS Human protein_coding chr5:43651867 chr5:43651871 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_68178 0 0 0 0 1 NNT chr5:43651841 3'AG 43651841 Downstream 31bp
chr2 27373020 27373020 1 + G T LUSC 27373018 + 27372998 27373038 41 CCAGTCCTGAGAATGCCGCGCGGGAGCGGAGCCGGGTCAGG CCAGTCCTGAGAATGCCGCGCGTGAGCGGAGCCGGGTCAGG < 41bp 0.89751657590029 0.655167657645843 0.8629876 0.49302816 prediction 0.484697836508895 Functional Loss - TCF23 ENSG00000163792 CDS Human protein_coding chr2:27373018 chr2:27373020 synonymous SNV . 0 23 hm5C_associated_SNPs_68179 0 0 0 0 1 TCF23 chr2:27372991 3'AG 27372991 Downstream 30bp
chr1 44132198 44132198 1 + T C LIHC 44132197 + 44132177 44132217 41 CCCTGATTTCCCCGTTAATGCTGAAGAAATATGGAATTCCC CCCTGATTTCCCCGTTAATGCCGAAGAAATATGGAATTCCC < 41bp 0.742343414537302 0.49294094124247 0.05158356 0.07122314 prediction 0.484686829074605 Functional Loss - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44132197 chr1:44132198 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_68180 0 0 1 0 2 KDM4A chr1:44132123 3'AG 44132123 Downstream 76bp
chr1 44132198 44132198 1 + T C LIHC 44132197 + 44132177 44132217 41 CCCTGATTTCCCCGTTAATGCTGAAGAAATATGGAATTCCC CCCTGATTTCCCCGTTAATGCCGAAGAAATATGGAATTCCC < 41bp 0.742343414537302 0.49294094124247 0.05158356 0.07122314 prediction 0.484686829074605 Functional Loss - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44132197 chr1:44132198 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_68180 0 0 1 0 2 KDM4A chr1:44132226 5'GT 44132226 Upstream 29bp
chr16 89789017 89789017 1 + C T HNSC 89789015 + 89788995 89789035 41 TCGAGAAGCCTGCGCAGCATCTCCGAGAGGGCGCCTGGAGC TCGAGAAGCCTGCGCAGCATCTTCGAGAGGGCGCCTGGAGC < 41bp 0.742339612651108 0.473335727324709 0.3886223 0.052532136 prediction 0.484679225302216 Functional Loss - ZNF276 ENSG00000158805 CDS Human protein_coding chr16:89789015 chr16:89789017 nonsynonymous SNV 0.007 0 23 hm5C_associated_SNPs_68182 0 0 1 0 1 ZNF276 chr16:89788939 3'AG 89788939 Downstream 79bp
chr20 61460288 61460288 1 + G C BRCA 61460287 + 61460267 61460307 41 CCTCACAGGGAGAGGCTGGTCGCAACGGTGCTCCGGGAGAG CCTCACAGGGAGAGGCTGGTCCCAACGGTGCTCCGGGAGAG < 41bp 0.856846126391065 0.614507370708247 0.7513495 0.39795962 prediction 0.484677511365635 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61460287 chr20:61460288 nonsynonymous SNV 0.247 2 22 hm5C_associated_SNPs_68183 0 0 1 0 2 COL9A3 chr20:61460275 3'AG 61460275 Downstream 14bp
chr20 61460288 61460288 1 + G C BRCA 61460287 + 61460267 61460307 41 CCTCACAGGGAGAGGCTGGTCGCAACGGTGCTCCGGGAGAG CCTCACAGGGAGAGGCTGGTCCCAACGGTGCTCCGGGAGAG < 41bp 0.856846126391065 0.614507370708247 0.7513495 0.39795962 prediction 0.484677511365635 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61460287 chr20:61460288 nonsynonymous SNV 0.247 2 22 hm5C_associated_SNPs_68183 0 0 1 0 2 COL9A3 chr20:61460328 5'GT 61460328 Upstream 41bp
chr7 75615261 75615261 1 + C T UCEC 75615259 + 75615239 75615279 41 AGGCAAGGAGGTGGGGGAGACGCTGCTGTACTACGGCTGCC AGGCAAGGAGGTGGGGGAGACGTTGCTGTACTACGGCTGCC < 41bp 0.747348701792772 0.505011619062457 0.6821212 0.78872824 prediction 0.484674165460632 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75615259 chr7:75615261 synonymous SNV . 0 23 hm5C_associated_SNPs_68185 0 0 1 0 2 POR chr7:75615167 3'AG 75615167 Downstream 95bp
chr7 75615261 75615261 1 + C T UCEC 75615259 + 75615239 75615279 41 AGGCAAGGAGGTGGGGGAGACGCTGCTGTACTACGGCTGCC AGGCAAGGAGGTGGGGGAGACGTTGCTGTACTACGGCTGCC < 41bp 0.747348701792772 0.505011619062457 0.6821212 0.78872824 prediction 0.484674165460632 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75615259 chr7:75615261 synonymous SNV . 0 23 hm5C_associated_SNPs_68185 0 0 1 0 2 POR chr7:75615241 3'AG 75615241 Downstream 21bp
chr19 47646764 47646764 1 + C T BLCA 47646762 + 47646742 47646782 41 GTCTTACAGGCTGCGGGCCTCTCGGGTGCTTCTTGTCGGCT GTCTTACAGGCTGCGGGCCTCTTGGGTGCTTCTTGTCGGCT < 41bp 0.742330360189238 0.467196072620879 0.5007591 0.34954464 prediction 0.484660720378476 Functional Loss - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47646762 chr19:47646764 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_68187 0 0 1 0 2 SAE1 chr19:47646751 3'AG 47646751 Downstream 14bp
chr19 47646764 47646764 1 + C T BLCA 47646762 + 47646742 47646782 41 GTCTTACAGGCTGCGGGCCTCTCGGGTGCTTCTTGTCGGCT GTCTTACAGGCTGCGGGCCTCTTGGGTGCTTCTTGTCGGCT < 41bp 0.742330360189238 0.467196072620879 0.5007591 0.34954464 prediction 0.484660720378476 Functional Loss - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47646762 chr19:47646764 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_68187 0 0 1 0 2 SAE1 chr19:47646862 5'GT 47646862 Upstream 99bp
chr10 7780691 7780691 1 + G T UCEC 7780688 + 7780668 7780708 41 TGGCACAAGGATCTCAGGTGCTAGAGTCCACGCCACCCCCA TGGCACAAGGATCTCAGGTGCTATAGTCCACGCCACCCCCA < 41bp 0.919122790810205 0.676794590224431 0.3938974 0.1943799 prediction 0.484656401171548 Functional Loss - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7780688 chr10:7780691 stopgain 0.071 0 24 hm5C_associated_SNPs_68189 0 0 1 0 1 ITIH2 chr10:7780721 5'GT 7780721 Upstream 31bp
chr11 65827474 65827474 1 + G T UCEC 65827472 + 65827452 65827492 41 AGGAGATGCGAGAGGCCCTGCAGGAGAAGGTGAGGGCCTGG AGGAGATGCGAGAGGCCCTGCATGAGAAGGTGAGGGCCTGG < 41bp 0.893367941826687 0.651045373317878 0.8403581 0.33041367 prediction 0.484645137017619 Functional Loss - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827472 chr11:65827474 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_68192 0 0 1 0 1 SF3B2 chr11:65827480 5'GT 65827480 Upstream 7bp
chr4 111480866 111480866 1 + A T COAD 111480862 + 111480842 111480882 41 AATAGCAGAGCCATTCAACACTGAACTGCAACTGTGGCAGG AATAGCAGAGCCATTCAACACTGATCTGCAACTGTGGCAGG < 41bp 0.742320876626149 0.406663820003094 0.1448 0.04707232 prediction 0.484641753252299 Functional Loss - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111480862 chr4:111480866 nonsynonymous SNV 0.939 1 25 hm5C_associated_SNPs_68193 0 0 0 0 2 ENPEP chr4:111480803 3'AG 111480803 Downstream 64bp
chr4 111480866 111480866 1 + A T COAD 111480862 + 111480842 111480882 41 AATAGCAGAGCCATTCAACACTGAACTGCAACTGTGGCAGG AATAGCAGAGCCATTCAACACTGATCTGCAACTGTGGCAGG < 41bp 0.742320876626149 0.406663820003094 0.1448 0.04707232 prediction 0.484641753252299 Functional Loss - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111480862 chr4:111480866 nonsynonymous SNV 0.939 1 25 hm5C_associated_SNPs_68193 0 0 0 0 2 ENPEP chr4:111480881 5'GT 111480881 Upstream 16bp
chr19 55421425 55421425 1 + G T LUAD 55421423 + 55421403 55421443 41 ACCTGAAGACCCCACCTTTCCTGGTGAGTAACTGGTCCTTC ACCTGAAGACCCCACCTTTCCTTGTGAGTAACTGGTCCTTC < 41bp 0.878545910948199 0.636229410666672 0.6038601 0.020020992 prediction 0.484633000563053 Functional Loss - NCR1 ENSG00000189430 CDS Human protein_coding chr19:55421423 chr19:55421425 nonsynonymous SNV 0.306 0 23 hm5C_associated_SNPs_68194 0 0 0 0 2 NCR1 chr19:55421378 3'AG 55421378 Downstream 48bp
chr19 55421425 55421425 1 + G T LUAD 55421423 + 55421403 55421443 41 ACCTGAAGACCCCACCTTTCCTGGTGAGTAACTGGTCCTTC ACCTGAAGACCCCACCTTTCCTTGTGAGTAACTGGTCCTTC < 41bp 0.878545910948199 0.636229410666672 0.6038601 0.020020992 prediction 0.484633000563053 Functional Loss - NCR1 ENSG00000189430 CDS Human protein_coding chr19:55421423 chr19:55421425 nonsynonymous SNV 0.306 0 23 hm5C_associated_SNPs_68194 0 0 0 0 2 NCR1 chr19:55421425 5'GT 55421425 Upstream 1bp
chr1 8384719 8384719 1 + G A UCEC 8384716 + 8384696 8384736 41 ATGGAGACGGCGTACGTGACCCCGGTGCTCCTGCAGATGGG ATGGAGACGGCGTACGTGACCCCAGTGCTCCTGCAGATGGG < 41bp 0.752734429313421 0.510419135180147 0.17698327 0.19537866 prediction 0.484630588266548 Functional Loss - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8384716 chr1:8384719 synonymous SNV . 0 24 hm5C_associated_SNPs_68195 0 0 0 0 1 SLC45A1 chr1:8384786 5'GT 8384786 Upstream 68bp
chr19 58563958 58563958 1 + G A SKCM 58563955 + 58563935 58563975 41 GCTCCAGCAGAGTCTGCACACCAGGGCGGAGGCCGAAGCGC GCTCCAGCAGAGTCTGCACACCAAGGCGGAGGCCGAAGCGC < 41bp 0.76993389775942 0.527623655067995 0.8841888 0.5398559 prediction 0.484620485382849 Functional Loss - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58563955 chr19:58563958 nonsynonymous SNV 0.012 0 24 hm5C_associated_SNPs_68198 0 0 0 0 1 ZSCAN1 chr19:58563996 5'GT 58563996 Upstream 39bp
chr8 80553702 80553702 1 + C T UCEC 80553700 + 80553680 80553720 41 ATCTCCTATCTCAGAAGCCCCACGAACTTTAGCTTCTCCAA ATCTCCTATCTCAGAAGCCCCATGAACTTTAGCTTCTCCAA < 41bp 0.827367767530682 0.585075236084977 0.14016145 0.10165647 prediction 0.484585062891411 Functional Loss - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80553700 chr8:80553702 stopgain 1.000 1 23 hm5C_associated_SNPs_68202 0 0 0 4 2 STMN2 chr8:80553613 3'AG 80553613 Downstream 90bp
chr8 80553702 80553702 1 + C T UCEC 80553700 + 80553680 80553720 41 ATCTCCTATCTCAGAAGCCCCACGAACTTTAGCTTCTCCAA ATCTCCTATCTCAGAAGCCCCATGAACTTTAGCTTCTCCAA < 41bp 0.827367767530682 0.585075236084977 0.14016145 0.10165647 prediction 0.484585062891411 Functional Loss - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80553700 chr8:80553702 stopgain 1.000 1 23 hm5C_associated_SNPs_68202 0 0 0 4 2 STMN2 chr8:80553785 5'GT 80553785 Upstream 84bp
chr11 73662141 73662141 1 + C T UCEC 73662139 + 73662119 73662159 41 GCCAGGATTATTACTCTGTGCTCGGGATCACTCGCAATTCA GCCAGGATTATTACTCTGTGCTTGGGATCACTCGCAATTCA < 41bp 0.774888660857602 0.532596909911907 0.08750254 0.10467589 prediction 0.484583501891389 Functional Loss - DNAJB13 ENSG00000187726 CDS Human protein_coding chr11:73662139 chr11:73662141 synonymous SNV . 0 23 hm5C_associated_SNPs_68203 0 0 0 0 1 DNAJB13 chr11:73662182 5'GT 73662182 Upstream 42bp
chr7 73752839 73752839 1 + C T UCEC 73752837 + 73752817 73752857 41 CCCCGGCCGCAGCTGCTGCCCCCGAGAAGCCGGGCCCCAAG CCCCGGCCGCAGCTGCTGCCCCTGAGAAGCCGGGCCCCAAG < 41bp 0.742287477928062 0.478134136868356 0.23743972 0.21674833 prediction 0.484574955856123 Functional Loss - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73752837 chr7:73752839 synonymous SNV . 0 23 hm5C_associated_SNPs_68204 0 0 0 0 1 CLIP2 chr7:73752778 3'AG 73752778 Downstream 62bp
chr10 5960424 5960424 1 + G A UCEC 5960421 + 5960401 5960441 41 TGTTCACAGTGCCCCACACCCACGTCTTCTATCTCACGCAG TGTTCACAGTGCCCCACACCCACATCTTCTATCTCACGCAG < 41bp 0.754821973177016 0.512534805501591 0.12927115 0.031867802 prediction 0.48457433535085 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5960421 chr10:5960424 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_68205 0 0 1 0 1 FBXO18 chr10:5960441 5'GT 5960441 Upstream 18bp
chr7 139229053 139229053 1 + C T UCEC 139229051 + 139229031 139229071 41 GTCGACGGAGTGTCTGATGACCCGGCCCTGGGTGTGCAGCA GTCGACGGAGTGTCTGATGACCTGGCCCTGGGTGTGCAGCA < 41bp 0.751238673589534 0.508953368489353 0.15583834 0.08547741 prediction 0.484570610200362 Functional Loss - CLEC2L ENSG00000236279 CDS Human protein_coding chr7:139229051 chr7:139229053 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_68208 0 0 0 0 1 CLEC2L chr7:139228977 3'AG 139228977 Downstream 77bp
chr1 170513942 170513942 1 + C T rs35872826 170513940 + 170513920 170513960 41 TGTCAGCTGACATTGGAATTCTCAGGAACCGGATTGATCAG TGTCAGCTGACATTGGAATTCTTAGGAACCGGATTGATCAG < 41bp 0.828991377117078 0.586712563451909 0.23671734 0.302123 prediction 0.484557627330338 Functional Loss - GORAB ENSG00000120370 CDS Human protein_coding chr1:170513940 chr1:170513942 synonymous SNV . 0 23 hm5C_associated_SNPs_68210 0 0 1 0 2 GORAB chr1:170513846 3'AG 170513846 Downstream 97bp
chr1 170513942 170513942 1 + C T rs35872826 170513940 + 170513920 170513960 41 TGTCAGCTGACATTGGAATTCTCAGGAACCGGATTGATCAG TGTCAGCTGACATTGGAATTCTTAGGAACCGGATTGATCAG < 41bp 0.828991377117078 0.586712563451909 0.23671734 0.302123 prediction 0.484557627330338 Functional Loss - GORAB ENSG00000120370 CDS Human protein_coding chr1:170513940 chr1:170513942 synonymous SNV . 0 23 hm5C_associated_SNPs_68210 0 0 1 0 2 GORAB chr1:170513986 5'GT 170513986 Upstream 45bp
chr1 27674319 27674319 1 + G A rs191472571 27674316 + 27674296 27674336 41 CAGGAGACCAGGCTCCAGGCCACGACAGGGAGGCTGAGGCT CAGGAGACCAGGCTCCAGGCCACAACAGGGAGGCTGAGGCT < 41bp 0.763169591074063 0.520890861087661 0.2634579 0.2598217 prediction 0.484557459972804 Functional Loss - SYTL1 ENSG00000142765 CDS Human protein_coding chr1:27674316 chr1:27674319 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_68211 0 0 1 0 2 SYTL1 chr1:27674299 3'AG 27674299 Downstream 21bp
chr1 27674319 27674319 1 + G A rs191472571 27674316 + 27674296 27674336 41 CAGGAGACCAGGCTCCAGGCCACGACAGGGAGGCTGAGGCT CAGGAGACCAGGCTCCAGGCCACAACAGGGAGGCTGAGGCT < 41bp 0.763169591074063 0.520890861087661 0.2634579 0.2598217 prediction 0.484557459972804 Functional Loss - SYTL1 ENSG00000142765 CDS Human protein_coding chr1:27674316 chr1:27674319 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_68211 0 0 1 0 2 SYTL1 chr1:27674371 5'GT 27674371 Upstream 53bp
chr6 148664279 148664279 1 + G T LUSC 148664277 + 148664257 148664297 41 GCCGGAGCCCGAGCCCGCGCCGGAGCCGGAACCGGAGCCCA GCCGGAGCCCGAGCCCGCGCCGTAGCCGGAACCGGAGCCCA < 41bp 0.742278308749877 0.384012460913102 0.91113126 0.79015976 prediction 0.484556617499755 Functional Loss - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148664277 chr6:148664279 stopgain 0.002 0 23 hm5C_associated_SNPs_68212 0 0 0 0 1 SASH1 chr6:148664359 5'GT 148664359 Upstream 81bp
chr4 76489417 76489417 1 + C T STAD 76489415 + 76489395 76489435 41 ACACTCACCCCTCCACCTGCCCCGAGGAGTCCGGTCACAAG ACACTCACCCCTCCACCTGCCCTGAGGAGTCCGGTCACAAG < 41bp 0.79308816561751 0.550813066468332 0.08844942 0.061523616 prediction 0.484550198298356 Functional Loss - C4orf26 ENSG00000174792 CDS Human protein_coding chr4:76489415 chr4:76489417 stopgain 0.000 0 23 hm5C_associated_SNPs_68213 0 0 0 0 2 C4orf26 chr4:76489324 3'AG 76489324 Downstream 94bp
chr4 76489417 76489417 1 + C T STAD 76489415 + 76489395 76489435 41 ACACTCACCCCTCCACCTGCCCCGAGGAGTCCGGTCACAAG ACACTCACCCCTCCACCTGCCCTGAGGAGTCCGGTCACAAG < 41bp 0.79308816561751 0.550813066468332 0.08844942 0.061523616 prediction 0.484550198298356 Functional Loss - C4orf26 ENSG00000174792 CDS Human protein_coding chr4:76489415 chr4:76489417 stopgain 0.000 0 23 hm5C_associated_SNPs_68213 0 0 0 0 2 C4orf26 chr4:76489462 5'GT 76489462 Upstream 46bp
chrX 153047060 153047060 1 + G A STAD 153047057 + 153047037 153047077 41 TTCTCCACCGTCTGGCTCTGCTGGGACATCCAGTGAGTGCC TTCTCCACCGTCTGGCTCTGCTGAGACATCCAGTGAGTGCC < 41bp 0.762234345302685 0.51996223197143 0.8335118 0.5602264 prediction 0.48454422666251 Functional Loss - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153047057 chrX:153047060 stopgain 1.000 1 24 hm5C_associated_SNPs_68214 0 0 0 0 1 SRPK3 chrX:153047068 5'GT 153047068 Upstream 9bp
chr2 103142788 103142788 1 + G T HNSC 103142785 + 103142765 103142805 41 TCAGTCTGCAGGAAGAGACACAAGGGCTGCTGGGTTCTCAG TCAGTCTGCAGGAAGAGACACAATGGCTGCTGGGTTCTCAG < 41bp 0.742270657888513 0.343912227649791 0.62367296 0.1390697 prediction 0.484541315777025 Functional Loss - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103142785 chr2:103142788 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_68215 0 0 0 0 2 SLC9A4 chr2:103142718 3'AG 103142718 Downstream 71bp
chr2 103142788 103142788 1 + G T HNSC 103142785 + 103142765 103142805 41 TCAGTCTGCAGGAAGAGACACAAGGGCTGCTGGGTTCTCAG TCAGTCTGCAGGAAGAGACACAATGGCTGCTGGGTTCTCAG < 41bp 0.742270657888513 0.343912227649791 0.62367296 0.1390697 prediction 0.484541315777025 Functional Loss - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103142785 chr2:103142788 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_68215 0 0 0 0 2 SLC9A4 chr2:103142805 5'GT 103142805 Upstream 18bp
chr6 160819069 160819069 1 + T C BLCA 160819068 + 160819048 160819088 41 TCACCCAAGCCATCCTGAACCTCGGCTTCCTGACTGGAGCA TCACCCAAGCCATCCTGAACCCCGGCTTCCTGACTGGAGCA < 41bp 0.785164882319332 0.542899306331084 0.3219378 0.22401303 prediction 0.484531151976495 Functional Loss - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160819068 chr6:160819069 nonsynonymous SNV 0.965 3 22 hm5C_associated_SNPs_68216 0 0 1 0 2 SLC22A3 chr6:160819011 3'AG 160819011 Downstream 59bp
chr6 160819069 160819069 1 + T C BLCA 160819068 + 160819048 160819088 41 TCACCCAAGCCATCCTGAACCTCGGCTTCCTGACTGGAGCA TCACCCAAGCCATCCTGAACCCCGGCTTCCTGACTGGAGCA < 41bp 0.785164882319332 0.542899306331084 0.3219378 0.22401303 prediction 0.484531151976495 Functional Loss - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160819068 chr6:160819069 nonsynonymous SNV 0.965 3 22 hm5C_associated_SNPs_68216 0 0 1 0 2 SLC22A3 chr6:160819114 5'GT 160819114 Upstream 46bp
chr12 9985906 9985906 1 + G T LIHC 9985904 + 9985884 9985924 41 AGTCCTGTATTCAAGTTTCTCAGGGAGTATTGCTAAAATGC AGTCCTGTATTCAAGTTTCTCATGGAGTATTGCTAAAATGC < 41bp 0.742264435018975 0.420175131357487 0.92005944 0.43825954 prediction 0.484528870037951 Functional Loss - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9985904 chr12:9985906 nonsynonymous SNV 0.979 3 23 hm5C_associated_SNPs_68217 0 0 0 3 1 KLRF1 chr12:9985899 3'AG 9985899 Downstream 8bp
chr2 207827201 207827201 1 + G T LUAD 207827198 + 207827178 207827218 41 GGACAGGGCCAGTGTCTGAACCAGAGACTAAAGCTGTTGCC GGACAGGGCCAGTGTCTGAACCATAGACTAAAGCTGTTGCC < 41bp 0.742264229640683 0.345978638822328 0.45195082 0.058743864 prediction 0.484528459281367 Functional Loss - CPO ENSG00000144410 CDS Human protein_coding chr2:207827198 chr2:207827201 stopgain 0.994 1 24 hm5C_associated_SNPs_68218 0 0 0 0 1 CPO chr2:207827136 3'AG 207827136 Downstream 66bp
chr12 58114203 58114203 1 + A C OV 58114202 + 58114182 58114222 41 TTTCCAGGGAAAATTGAGATCAAAATTGTCCGCCCATGGGC TTTCCAGGGAAAATTGAGATCCAAATTGTCCGCCCATGGGC < 41bp 0.77187075754904 0.529608289722814 0.0484522 0.02038762 prediction 0.484524935652451 Functional Loss - OS9 ENSG00000135506 CDS Human protein_coding chr12:58114202 chr12:58114203 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_68219 0 0 1 0 2 OS9 chr12:58114189 3'AG 58114189 Downstream 15bp
chr12 58114203 58114203 1 + A C OV 58114202 + 58114182 58114222 41 TTTCCAGGGAAAATTGAGATCAAAATTGTCCGCCCATGGGC TTTCCAGGGAAAATTGAGATCCAAATTGTCCGCCCATGGGC < 41bp 0.77187075754904 0.529608289722814 0.0484522 0.02038762 prediction 0.484524935652451 Functional Loss - OS9 ENSG00000135506 CDS Human protein_coding chr12:58114202 chr12:58114203 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_68219 0 0 1 0 2 OS9 chr12:58114301 5'GT 58114301 Upstream 99bp
chr20 37657133 37657133 1 + G T UCEC 37657130 + 37657110 37657150 41 TGCAGCGAGGTTTCATTCTACTGGAGCTTATAGGTAACATG TGCAGCGAGGTTTCATTCTACTGTAGCTTATAGGTAACATG < 41bp 0.74225940550657 0.355506344999929 0.027859807 0.015813887 prediction 0.484518811013141 Functional Loss - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37657130 chr20:37657133 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_68221 0 0 1 0 2 DHX35 chr20:37657061 3'AG 37657061 Downstream 73bp
chr20 37657133 37657133 1 + G T UCEC 37657130 + 37657110 37657150 41 TGCAGCGAGGTTTCATTCTACTGGAGCTTATAGGTAACATG TGCAGCGAGGTTTCATTCTACTGTAGCTTATAGGTAACATG < 41bp 0.74225940550657 0.355506344999929 0.027859807 0.015813887 prediction 0.484518811013141 Functional Loss - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37657130 chr20:37657133 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_68221 0 0 1 0 2 DHX35 chr20:37657142 5'GT 37657142 Upstream 10bp
chr17 48457722 48457722 1 + G C rs77309724 48457718 + 48457698 48457738 41 TCCTTCTGTCTGGAGAGTGACTGGGCTGGAGGGGTGAAGGT TCCTTCTGTCTGGAGAGTGACTGGCCTGGAGGGGTGAAGGT < 41bp 0.825209420667312 0.582950964432348 0.834501 0.2737962 prediction 0.484516912469928 Functional Loss - EME1 ENSG00000154920 CDS Human protein_coding chr17:48457718 chr17:48457722 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_68222 0 0 1 0 1 EME1 chr17:48457673 3'AG 48457673 Downstream 50bp
chr4 98288113 98288113 1 + A C rs141470824 98288109 + 98288089 98288129 41 AGAACCCAGCCAAGTTGTGACTGGAGACTCCTGACTTACGG AGAACCCAGCCAAGTTGTGACTGGCGACTCCTGACTTACGG < 41bp 0.742253378606116 0.455772376153959 0.13507846 0.2219365 prediction 0.484506757212231 Functional Loss - STPG2-AS1 ENSG00000251620 ncRNA_exonic Human antisense chr4:98288109 chr4:98288113 . . 0 25 hm5C_associated_SNPs_68224 0 0 0 0 1 STPG2-AS1 chr4:98288139 5'GT 98288139 Upstream 27bp
chr3 195395447 195395447 1 + C T UCEC 195395445 + 195395425 195395465 41 CACACCAGCACCAGCGACGGCACGGCCATGATCACCAGGGC CACACCAGCACCAGCGACGGCATGGCCATGATCACCAGGGC < 41bp 0.742251479537184 0.499707484021326 0.18823558 0.17746949 prediction 0.484502959074368 Functional Loss - SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195395445 chr3:195395447 . . 0 23 hm5C_associated_SNPs_68225 0 0 0 0 2 SDHAP2 chr3:195395390 3'AG 195395390 Downstream 58bp
chr3 195395447 195395447 1 + C T UCEC 195395445 + 195395425 195395465 41 CACACCAGCACCAGCGACGGCACGGCCATGATCACCAGGGC CACACCAGCACCAGCGACGGCATGGCCATGATCACCAGGGC < 41bp 0.742251479537184 0.499707484021326 0.18823558 0.17746949 prediction 0.484502959074368 Functional Loss - SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195395445 chr3:195395447 . . 0 23 hm5C_associated_SNPs_68225 0 0 0 0 2 SDHAP2 chr3:195395512 5'GT 195395512 Upstream 66bp
chr13 48936983 48936983 1 + C T BLCA 48936981 + 48936961 48937001 41 TATACCCATTAATGGTTCACCTCGAACACCCAGGCGAGGTC TATACCCATTAATGGTTCACCTTGAACACCCAGGCGAGGTC < 41bp 0.742245622245596 0.4401484170443 0.21937817 0.046038926 prediction 0.484491244491191 Functional Loss - RB1 ENSG00000139687 CDS Human protein_coding chr13:48936981 chr13:48936983 stopgain 1.000 1 23 hm5C_associated_SNPs_68227 1 0 0 0 1 RB1 chr13:48936951 3'AG 48936951 Downstream 33bp
chr5 65088371 65088371 1 + C T SKCM 65088369 + 65088349 65088389 41 GGATGATGGCAGTGGCTGCCCTCGTGGTGAACTTCTCACAG GGATGATGGCAGTGGCTGCCCTTGTGGTGAACTTCTCACAG < 41bp 0.829531529965659 0.587287983109355 0.073569566 0.083344966 prediction 0.484487093712606 Functional Loss - NLN ENSG00000123213 CDS Human protein_coding chr5:65088369 chr5:65088371 synonymous SNV . 0 23 hm5C_associated_SNPs_68228 0 0 1 0 2 NLN chr5:65088281 3'AG 65088281 Downstream 91bp
chr5 65088371 65088371 1 + C T SKCM 65088369 + 65088349 65088389 41 GGATGATGGCAGTGGCTGCCCTCGTGGTGAACTTCTCACAG GGATGATGGCAGTGGCTGCCCTTGTGGTGAACTTCTCACAG < 41bp 0.829531529965659 0.587287983109355 0.073569566 0.083344966 prediction 0.484487093712606 Functional Loss - NLN ENSG00000123213 CDS Human protein_coding chr5:65088369 chr5:65088371 synonymous SNV . 0 23 hm5C_associated_SNPs_68228 0 0 1 0 2 NLN chr5:65088428 5'GT 65088428 Upstream 58bp
chr1 175048541 175048541 1 + G T LUAD 175048539 + 175048519 175048559 41 AGCTGCCACTGCGAAGAGGGCAGGGAGGGCCCCGCCTGCGA AGCTGCCACTGCGAAGAGGGCATGGAGGGCCCCGCCTGCGA < 41bp 0.905392669548624 0.663165269597323 0.89002454 0.74069685 prediction 0.484454799902602 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175048539 chr1:175048541 nonsynonymous SNV 0.911 2 23 hm5C_associated_SNPs_68234 0 0 0 0 1 TNN chr1:175048469 3'AG 175048469 Downstream 73bp
chr21 39670173 39670173 1 + G C rs76855719 39670169 + 39670149 39670189 41 AACATGGAGCAGAGCGTTCCCTGGGGCTGAGCATGGGAGCC AACATGGAGCAGAGCGTTCCCTGGCGCTGAGCATGGGAGCC < 41bp 0.742217306169233 0.444853251682952 0.718975 0.21090323 prediction 0.484434612338466 Functional Loss - KCNJ15 ENSG00000157551 UTR5 Human protein_coding chr21:39670169 chr21:39670173 . . 0 25 hm5C_associated_SNPs_68235 0 0 0 0 1 KCNJ15 chr21:39670204 5'GT 39670204 Upstream 32bp
chr12 119563191 119563191 1 + G A UCEC 119563188 + 119563168 119563208 41 CCTTCTCATCCCCCCAAGATCTCGAAGCCGGCCCCGAAAGT CCTTCTCATCCCCCCAAGATCTCAAAGCCGGCCCCGAAAGT < 41bp 0.748725932603787 0.506509174347245 0.796677 0.07953739 prediction 0.484433516513085 Functional Loss - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119563188 chr12:119563191 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_68236 0 0 1 0 2 SRRM4 chr12:119563186 3'AG 119563186 Downstream 6bp
chr12 119563191 119563191 1 + G A UCEC 119563188 + 119563168 119563208 41 CCTTCTCATCCCCCCAAGATCTCGAAGCCGGCCCCGAAAGT CCTTCTCATCCCCCCAAGATCTCAAAGCCGGCCCCGAAAGT < 41bp 0.748725932603787 0.506509174347245 0.796677 0.07953739 prediction 0.484433516513085 Functional Loss - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119563188 chr12:119563191 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_68236 0 0 1 0 2 SRRM4 chr12:119563284 5'GT 119563284 Upstream 94bp
chr4 159750334 159750334 1 + G A SKCM 159750331 + 159750311 159750351 41 CATCTCTTCCCACAGTTCTTCTGGGGGATCTTCACATCATG CATCTCTTCCCACAGTTCTTCTGAGGGATCTTCACATCATG < 41bp 0.742202167917946 0.495700642826461 0.808538 0.3418203 prediction 0.484404335835892 Functional Loss - FNIP2 ENSG00000052795 CDS Human protein_coding chr4:159750331 chr4:159750334 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_68241 0 0 1 0 1 FNIP2 chr4:159750377 5'GT 159750377 Upstream 44bp
chr19 52938459 52938459 1 + A C rs11084163 52938458 + 52938438 52938478 41 GAGTGCATCAAAGGTGTGAACACAGGTGAGAGCTCAGGTGG GAGTGCATCAAAGGTGTGAACCCAGGTGAGAGCTCAGGTGG < 41bp 0.777023329486383 0.534821919583194 0.35923094 0.31679046 prediction 0.484402819806379 Functional Loss - ZNF534 ENSG00000198633 CDS Human protein_coding chr19:52938458 chr19:52938459 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_68242 0 0 0 0 1 ZNF534 chr19:52938462 5'GT 52938462 Upstream 4bp
chr6 161157950 161157950 1 + A C SKCM 161157946 + 161157926 161157966 41 TTCATTTGATTGTGGGAAGCCTCAAGTGGAGCCGAAGAAAT TTCATTTGATTGTGGGAAGCCTCACGTGGAGCCGAAGAAAT < 41bp 0.742192908290285 0.309617636644873 0.50616413 0.03225103 prediction 0.484385816580571 Functional Loss - PLG ENSG00000122194 CDS Human protein_coding chr6:161157946 chr6:161157950 nonsynonymous SNV 0.608 2 25 hm5C_associated_SNPs_68244 0 0 0 0 2 PLG chr6:161157919 3'AG 161157919 Downstream 32bp
chr6 161157950 161157950 1 + A C SKCM 161157946 + 161157926 161157966 41 TTCATTTGATTGTGGGAAGCCTCAAGTGGAGCCGAAGAAAT TTCATTTGATTGTGGGAAGCCTCACGTGGAGCCGAAGAAAT < 41bp 0.742192908290285 0.309617636644873 0.50616413 0.03225103 prediction 0.484385816580571 Functional Loss - PLG ENSG00000122194 CDS Human protein_coding chr6:161157946 chr6:161157950 nonsynonymous SNV 0.608 2 25 hm5C_associated_SNPs_68244 0 0 0 0 2 PLG chr6:161158039 5'GT 161158039 Upstream 90bp
chr12 247775 247775 1 - G A STAD 247777 - 247757 247797 41 TTGAGGCTCCACGTGCTGAGCGCGTCGTCGATGGACTTGGC TTGAGGCTCCACGTGCTGAGCGTGTCGTCGATGGACTTGGC < 41bp 0.758426306723891 0.516234191862888 0.39860457 0.41198 prediction 0.484384229722007 Functional Loss - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:247777 chr12:247775 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_68245 0 0 0 0 2 IQSEC3 chr12:247717 5'GT 247717 Upstream 59bp
chr12 247775 247775 1 - G A STAD 247777 - 247757 247797 41 TTGAGGCTCCACGTGCTGAGCGCGTCGTCGATGGACTTGGC TTGAGGCTCCACGTGCTGAGCGTGTCGTCGATGGACTTGGC < 41bp 0.758426306723891 0.516234191862888 0.39860457 0.41198 prediction 0.484384229722007 Functional Loss - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:247777 chr12:247775 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_68245 0 0 0 0 2 IQSEC3 chr12:247810 3'AG 247810 Downstream 36bp
chr15 45249158 45249158 1 + G T GBM 45249155 + 45249135 45249175 41 TTCTTGTTCAGCTGTGATGCCTCGCACCCAGACACGCTGAG TTCTTGTTCAGCTGTGATGCCTCTCACCCAGACACGCTGAG < 41bp 0.74218783224372 0.359071706784056 0.07125026 0.04829669 prediction 0.484375664487439 Functional Loss - TERB2 ENSG00000167014 CDS Human protein_coding chr15:45249155 chr15:45249158 synonymous SNV . 0 24 hm5C_associated_SNPs_68248 0 0 0 0 2 TERB2 chr15:45249094 3'AG 45249094 Downstream 65bp
chr15 45249158 45249158 1 + G T GBM 45249155 + 45249135 45249175 41 TTCTTGTTCAGCTGTGATGCCTCGCACCCAGACACGCTGAG TTCTTGTTCAGCTGTGATGCCTCTCACCCAGACACGCTGAG < 41bp 0.74218783224372 0.359071706784056 0.07125026 0.04829669 prediction 0.484375664487439 Functional Loss - TERB2 ENSG00000167014 CDS Human protein_coding chr15:45249155 chr15:45249158 synonymous SNV . 0 24 hm5C_associated_SNPs_68248 0 0 0 0 2 TERB2 chr15:45249175 5'GT 45249175 Upstream 18bp
chr2 162275552 162275552 1 + G T UCEC 162275550 + 162275530 162275570 41 TCATCGCCGTCACCGCCTACCAGAACACGGATGTAAGGAGA TCATCGCCGTCACCGCCTACCATAACACGGATGTAAGGAGA < 41bp 0.742181140811158 0.389253717071623 0.5124214 0.059835404 prediction 0.484362281622316 Functional Loss - TBR1 ENSG00000136535 CDS Human protein_coding chr2:162275550 chr2:162275552 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_68251 0 0 0 0 1 TBR1 chr2:162275561 5'GT 162275561 Upstream 10bp
chr12 52284445 52284445 1 + A C LUAD 52284441 + 52284421 52284461 41 GCAGTGCTGACCGACAGCTTCGACACCGTGTGGAGGATTCG GCAGTGCTGACCGACAGCTTCGACCCCGTGTGGAGGATTCG < 41bp 0.742176087434453 0.355498985088833 0.33641967 0.3402409 prediction 0.484352174868905 Functional Loss - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52284441 chr12:52284445 nonsynonymous SNV 0.267 3 25 hm5C_associated_SNPs_68254 0 0 0 0 1 ANKRD33 chr12:52284368 3'AG 52284368 Downstream 78bp
chr19 17875207 17875207 1 + C T SKCM 17875205 + 17875185 17875225 41 GCCACCATCGAGGAGACCTACTCGAAGGCGATGGCGAAACT GCCACCATCGAGGAGACCTACTTGAAGGCGATGGCGAAACT < 41bp 0.847964048582719 0.605797832062843 0.94413614 0.42213538 prediction 0.484332433039752 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17875205 chr19:17875207 nonsynonymous SNV 0.974 3 23 hm5C_associated_SNPs_68255 0 0 1 0 2 FCHO1 chr19:17875184 3'AG 17875184 Downstream 24bp
chr19 17875207 17875207 1 + C T SKCM 17875205 + 17875185 17875225 41 GCCACCATCGAGGAGACCTACTCGAAGGCGATGGCGAAACT GCCACCATCGAGGAGACCTACTTGAAGGCGATGGCGAAACT < 41bp 0.847964048582719 0.605797832062843 0.94413614 0.42213538 prediction 0.484332433039752 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17875205 chr19:17875207 nonsynonymous SNV 0.974 3 23 hm5C_associated_SNPs_68255 0 0 1 0 2 FCHO1 chr19:17875258 5'GT 17875258 Upstream 52bp
chr8 2040257 2040257 1 + G A SKCM 2040254 + 2040234 2040274 41 TGCAGTGGGACCGACCTAAGCATGAGGAGGACCTGCTGGGC TGCAGTGGGACCGACCTAAGCATAAGGAGGACCTGCTGGGC < 41bp 0.744106629757606 0.501942782275671 0.36177197 0.22276044 prediction 0.484327694963871 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2040254 chr8:2040257 nonsynonymous SNV 0.183 0 24 hm5C_associated_SNPs_68256 0 0 0 0 2 MYOM2 chr8:2040174 3'AG 2040174 Downstream 84bp
chr8 2040257 2040257 1 + G A SKCM 2040254 + 2040234 2040274 41 TGCAGTGGGACCGACCTAAGCATGAGGAGGACCTGCTGGGC TGCAGTGGGACCGACCTAAGCATAAGGAGGACCTGCTGGGC < 41bp 0.744106629757606 0.501942782275671 0.36177197 0.22276044 prediction 0.484327694963871 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2040254 chr8:2040257 nonsynonymous SNV 0.183 0 24 hm5C_associated_SNPs_68256 0 0 0 0 2 MYOM2 chr8:2040348 5'GT 2040348 Upstream 92bp
chr7 95157578 95157578 1 + A C GBM 95157577 + 95157557 95157597 41 GCTACCAGCTCCTGTTGAACCATGGGGCTGCCCGAATATAC GCTACCAGCTCCTGTTGAACCCTGGGGCTGCCCGAATATAC < 41bp 0.742158862143421 0.48533864344536 0.42804116 0.17730948 prediction 0.484317724286841 Functional Loss - ASB4 ENSG00000005981 CDS Human protein_coding chr7:95157577 chr7:95157578 nonsynonymous SNV 0.545 3 22 hm5C_associated_SNPs_68259 0 0 0 0 1 ASB4 chr7:95157615 5'GT 95157615 Upstream 38bp
chr11 118851387 118851387 1 + G A GBM 118851384 + 118851364 118851404 41 GCCGCTTTGCGGAGGAGGCCCGCGCCTTGGCTTCCACTCGG GCCGCTTTGCGGAGGAGGCCCGCACCTTGGCTTCCACTCGG < 41bp 0.768195467412203 0.526037384892812 0.8094021 0.34040463 prediction 0.484316165038783 Functional Loss - FOXR1 ENSG00000176302 CDS Human protein_coding chr11:118851384 chr11:118851387 nonsynonymous SNV 0.902 1 24 hm5C_associated_SNPs_68260 0 0 0 0 1 FOXR1 chr11:118851438 5'GT 118851438 Upstream 52bp
chr2 220371039 220371039 1 + G T LUSC 220371036 + 220371016 220371056 41 GCACCGTGGGACGCTGGGCCCGCGTGGAGGGTACCCCCAGT GCACCGTGGGACGCTGGGCCCGCTTGGAGGGTACCCCCAGT < 41bp 0.91952918351683 0.677372765065833 0.5509057 0.032027215 prediction 0.484312836901993 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220371036 chr2:220371039 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_68261 0 0 1 0 1 GMPPA chr2:220370976 3'AG 220370976 Downstream 64bp
chr12 117188112 117188112 1 + G A HNSC 117188109 + 117188089 117188129 41 AACTGTGCTTTCAGCATAAGCTCGGTGAGTTCTGGGGGCAT AACTGTGCTTTCAGCATAAGCTCAGTGAGTTCTGGGGGCAT < 41bp 0.760133484014512 0.517980054010023 0.24135718 0.20631638 prediction 0.484306860008977 Functional Loss - RNFT2 ENSG00000135119 CDS Human protein_coding chr12:117188109 chr12:117188112 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_68264 0 0 1 0 1 RNFT2 chr12:117188112 5'GT 117188112 Upstream 1bp
chr1 11808504 11808504 1 + G T UCEC 11808502 + 11808482 11808522 41 GCTTGCTGGCCACCATCTTCCTGGACATCGTGCACATCAGC GCTTGCTGGCCACCATCTTCCTTGACATCGTGCACATCAGC < 41bp 0.89225754369845 0.650105432869426 0.20595193 0.064162225 prediction 0.484304221658046 Functional Loss - AGTRAP ENSG00000177674 CDS Human protein_coding chr1:11808502 chr1:11808504 stopgain 0.995 0 23 hm5C_associated_SNPs_68265 0 0 1 0 1 AGTRAP chr1:11808472 3'AG 11808472 Downstream 33bp
chr19 14674476 14674476 1 + A T HNSC 14674472 + 14674452 14674492 41 GCCCTGTTCTCCCCGCAGATCCGCAGTGGTACCCCGCCCGC GCCCTGTTCTCCCCGCAGATCCGCTGTGGTACCCCGCCCGC < 41bp 0.876001064340785 0.633853747988332 0.37101918 0.4127203 prediction 0.484294632704907 Functional Loss - TECR ENSG00000099797 CDS Human protein_coding chr19:14674472 chr19:14674476 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_68267 0 0 1 0 2 TECR chr19:14674470 3'AG 14674470 Downstream 7bp
chr19 14674476 14674476 1 + A T HNSC 14674472 + 14674452 14674492 41 GCCCTGTTCTCCCCGCAGATCCGCAGTGGTACCCCGCCCGC GCCCTGTTCTCCCCGCAGATCCGCTGTGGTACCCCGCCCGC < 41bp 0.876001064340785 0.633853747988332 0.37101918 0.4127203 prediction 0.484294632704907 Functional Loss - TECR ENSG00000099797 CDS Human protein_coding chr19:14674472 chr19:14674476 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_68267 0 0 1 0 2 TECR chr19:14674514 5'GT 14674514 Upstream 39bp
chr1 205561360 205561360 1 + C T BLCA 205561358 + 205561338 205561378 41 CGGCAAGCCTGGGCCTGTTTCTCAGCAGCACCTTCCCCAGC CGGCAAGCCTGGGCCTGTTTCTTAGCAGCACCTTCCCCAGC < 41bp 0.810030296062617 0.56788351061357 0.12532258 0.2138384 prediction 0.484293570898094 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561358 chr1:205561360 synonymous SNV . 0 23 hm5C_associated_SNPs_68268 0 0 0 2 2 MFSD4A chr1:205561268 3'AG 205561268 Downstream 93bp
chr1 205561360 205561360 1 + C T BLCA 205561358 + 205561338 205561378 41 CGGCAAGCCTGGGCCTGTTTCTCAGCAGCACCTTCCCCAGC CGGCAAGCCTGGGCCTGTTTCTTAGCAGCACCTTCCCCAGC < 41bp 0.810030296062617 0.56788351061357 0.12532258 0.2138384 prediction 0.484293570898094 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561358 chr1:205561360 synonymous SNV . 0 23 hm5C_associated_SNPs_68268 0 0 0 2 2 MFSD4A chr1:205561415 5'GT 205561415 Upstream 56bp
chr21 45713016 45713016 1 + G A PAAD 45713013 + 45712993 45713033 41 CCGCTGCCAGGGCTGGACTCCTCGGCCCTGCACCCCCTACT CCGCTGCCAGGGCTGGACTCCTCAGCCCTGCACCCCCTACT < 41bp 0.75443072689884 0.512286492510214 0.2412771 0.14504996 prediction 0.484288468777254 Functional Loss - AIRE ENSG00000160224 CDS Human protein_coding chr21:45713013 chr21:45713016 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_68269 0 0 0 0 2 AIRE chr21:45712991 3'AG 45712991 Downstream 26bp
chr21 45713016 45713016 1 + G A PAAD 45713013 + 45712993 45713033 41 CCGCTGCCAGGGCTGGACTCCTCGGCCCTGCACCCCCTACT CCGCTGCCAGGGCTGGACTCCTCAGCCCTGCACCCCCTACT < 41bp 0.75443072689884 0.512286492510214 0.2412771 0.14504996 prediction 0.484288468777254 Functional Loss - AIRE ENSG00000160224 CDS Human protein_coding chr21:45713013 chr21:45713016 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_68269 0 0 0 0 2 AIRE chr21:45713058 5'GT 45713058 Upstream 43bp
chrX 2931142 2931142 1 + G A LAML 2931139 + 2931119 2931159 41 CTTCACGTGGCTTGGTGGGTCAGGTGGTCTTCCCACCAATG CTTCACGTGGCTTGGTGGGTCAGATGGTCTTCCCACCAATG < 41bp 0.757678809753974 0.515539909686912 0.9000485 0.4482118 prediction 0.484277800134126 Functional Loss - ARSH ENSG00000205667 CDS Human protein_coding chrX:2931139 chrX:2931142 nonsynonymous SNV 0.003 5 24 hm5C_associated_SNPs_68271 0 0 0 0 2 ARSH chrX:2931088 3'AG 2931088 Downstream 55bp
chrX 2931142 2931142 1 + G A LAML 2931139 + 2931119 2931159 41 CTTCACGTGGCTTGGTGGGTCAGGTGGTCTTCCCACCAATG CTTCACGTGGCTTGGTGGGTCAGATGGTCTTCCCACCAATG < 41bp 0.757678809753974 0.515539909686912 0.9000485 0.4482118 prediction 0.484277800134126 Functional Loss - ARSH ENSG00000205667 CDS Human protein_coding chrX:2931139 chrX:2931142 nonsynonymous SNV 0.003 5 24 hm5C_associated_SNPs_68271 0 0 0 0 2 ARSH chrX:2931213 5'GT 2931213 Upstream 72bp
chr9 141069885 141069885 1 + A C ACC 141069881 + 141069861 141069901 41 CCTACCACGGGGACAGCCACCTGCAGCTGGAGCGCATCAAC CCTACCACGGGGACAGCCACCTGCCGCTGGAGCGCATCAAC < 41bp 0.921765869523629 0.679627181018136 0.46067646 0.27003315 prediction 0.484277377010986 Functional Loss - TUBBP5 ENSG00000159247 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:141069881 chr9:141069885 . . 0 25 hm5C_associated_SNPs_68272 0 0 0 0 2 TUBBP5 chr9:141069815 3'AG 141069815 Downstream 71bp
chr9 141069885 141069885 1 + A C ACC 141069881 + 141069861 141069901 41 CCTACCACGGGGACAGCCACCTGCAGCTGGAGCGCATCAAC CCTACCACGGGGACAGCCACCTGCCGCTGGAGCGCATCAAC < 41bp 0.921765869523629 0.679627181018136 0.46067646 0.27003315 prediction 0.484277377010986 Functional Loss - TUBBP5 ENSG00000159247 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:141069881 chr9:141069885 . . 0 25 hm5C_associated_SNPs_68272 0 0 0 0 2 TUBBP5 chr9:141069923 5'GT 141069923 Upstream 39bp
chr11 86518768 86518768 1 + G T SKCM 86518766 + 86518746 86518786 41 GTGAGCCCTTACAGTGCCCCCTGGAAACCCACTTGGCCTGC GTGAGCCCTTACAGTGCCCCCTTGAAACCCACTTGGCCTGC < 41bp 0.880883003287133 0.638748009566991 0.35150093 0.08517623 prediction 0.484269987440284 Functional Loss - PRSS23 ENSG00000150687 CDS Human protein_coding chr11:86518766 chr11:86518768 nonsynonymous SNV 0.940 0 23 hm5C_associated_SNPs_68275 0 0 1 0 1 PRSS23 chr11:86518673 3'AG 86518673 Downstream 96bp
chrX 152113846 152113846 1 + C T UCEC 152113844 + 152113824 152113864 41 TATGAGGGGAAGGATGTGGCCACCAGGGTCGGAGAGGCCTG TATGAGGGGAAGGATGTGGCCATCAGGGTCGGAGAGGCCTG < 41bp 0.799586559002299 0.55745195681542 0.5726651 0.56421083 prediction 0.484269204373758 Functional Loss - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152113844 chrX:152113846 nonsynonymous SNV 0.005 1 23 hm5C_associated_SNPs_68276 0 0 1 0 1 ZNF185 chrX:152113811 3'AG 152113811 Downstream 36bp
chr19 38684410 38684410 1 + C T LUSC 38684408 + 38684388 38684428 41 CTGCCGCCGGCAGCGGCTTTCCCGAGAAGAAATGTGAGCCT CTGCCGCCGGCAGCGGCTTTCCTGAGAAGAAATGTGAGCCT < 41bp 0.760577042434557 0.518451398375396 0.7962421 0.6693019 prediction 0.484251288118323 Functional Loss - SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38684408 chr19:38684410 synonymous SNV . 0 23 hm5C_associated_SNPs_68279 0 0 0 0 1 SIPA1L3 chr19:38684420 5'GT 38684420 Upstream 11bp
chr20 31878884 31878884 1 + G A SKCM 31878881 + 31878861 31878901 41 TCAGTGACTGTGCCACCAGCCATGGGAGCCTGCGCATCCAA TCAGTGACTGTGCCACCAGCCATAGGAGCCTGCGCATCCAA < 41bp 0.7486553182364 0.506532253206456 0.81311285 0.5669159 prediction 0.484246130059887 Functional Loss - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31878881 chr20:31878884 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_68280 0 0 0 0 1 BPIFB1 chr20:31878912 5'GT 31878912 Upstream 29bp
chr9 139975270 139975270 1 + G T READ 139975268 + 139975248 139975288 41 CCCAGCACTACCGGTGGGCTCTGCGGGCCGGGGCCCGCTTC CCCAGCACTACCGGTGGGCTCTTCGGGCCGGGGCCCGCTTC < 41bp 0.892859232943417 0.650744252871626 0.8661269 0.7867528 prediction 0.484229960143581 Functional Loss - UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139975268 chr9:139975270 synonymous SNV . 0 23 hm5C_associated_SNPs_68282 0 0 0 0 1 UAP1L1 chr9:139975326 5'GT 139975326 Upstream 57bp
chr20 17417497 17417497 1 + C T COAD 17417495 + 17417475 17417515 41 GTGGATGGGCCCCGGGAGCTCACGCTGCAGGCCATGGCCGA GTGGATGGGCCCCGGGAGCTCATGCTGCAGGCCATGGCCGA < 41bp 0.808355978438718 0.566243491700978 0.63325214 0.51821357 prediction 0.484224973475482 Functional Loss - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17417495 chr20:17417497 nonsynonymous SNV 0.965 5 23 hm5C_associated_SNPs_68283 0 0 0 0 1 PCSK2 chr20:17417528 5'GT 17417528 Upstream 32bp
chr10 81109426 81109426 1 + T C UCEC 81109425 + 81109405 81109445 41 TCTCTTCGACCCTCAGAGAACTTCAGAGCCCTGTGCACTGG TCTCTTCGACCCTCAGAGAACCTCAGAGCCCTGTGCACTGG < 41bp 0.742107859860335 0.475200162574377 0.3170505 0.22247404 prediction 0.484215719720671 Functional Loss - PPIF ENSG00000108179 CDS Human protein_coding chr10:81109425 chr10:81109426 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_68284 0 0 1 0 2 PPIF chr10:81109421 3'AG 81109421 Downstream 6bp
chr10 81109426 81109426 1 + T C UCEC 81109425 + 81109405 81109445 41 TCTCTTCGACCCTCAGAGAACTTCAGAGCCCTGTGCACTGG TCTCTTCGACCCTCAGAGAACCTCAGAGCCCTGTGCACTGG < 41bp 0.742107859860335 0.475200162574377 0.3170505 0.22247404 prediction 0.484215719720671 Functional Loss - PPIF ENSG00000108179 CDS Human protein_coding chr10:81109425 chr10:81109426 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_68284 0 0 1 0 2 PPIF chr10:81109509 5'GT 81109509 Upstream 84bp
chr11 55032453 55032453 1 + C T UCEC 55032451 + 55032431 55032471 41 TGCATGAACTACTTCATAGACCCGGTCACCATAGACTGTGG TGCATGAACTACTTCATAGACCTGGTCACCATAGACTGTGG < 41bp 0.74210596739822 0.474193752733926 0.26854128 0.3256542 prediction 0.484211934796441 Functional Loss - TRIM48 ENSG00000150244 CDS Human protein_coding chr11:55032451 chr11:55032453 nonsynonymous SNV 0.317 2 23 hm5C_associated_SNPs_68286 0 0 0 0 1 TRIM48 chr11:55032376 3'AG 55032376 Downstream 78bp
chr19 36348297 36348297 1 + G T LUAD 36348294 + 36348274 36348314 41 CAGAGGACCTGGTGGTGCTGCTGGGGGAGGAAGCCCGGCTG CAGAGGACCTGGTGGTGCTGCTGTGGGAGGAAGCCCGGCTG < 41bp 0.922845876084047 0.680741524099588 0.91122854 0.5966851 prediction 0.484208703968918 Functional Loss - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36348294 chr19:36348297 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_68287 0 0 0 0 2 KIRREL2 chr19:36348247 3'AG 36348247 Downstream 51bp
chr19 36348297 36348297 1 + G T LUAD 36348294 + 36348274 36348314 41 CAGAGGACCTGGTGGTGCTGCTGGGGGAGGAAGCCCGGCTG CAGAGGACCTGGTGGTGCTGCTGTGGGAGGAAGCCCGGCTG < 41bp 0.922845876084047 0.680741524099588 0.91122854 0.5966851 prediction 0.484208703968918 Functional Loss - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36348294 chr19:36348297 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_68287 0 0 0 0 2 KIRREL2 chr19:36348396 5'GT 36348396 Upstream 100bp
chr12 32735366 32735366 1 + G T LUAD 32735363 + 32735343 32735383 41 GGGAAAATGGGGAAAGCCCTCTGGAACTGGAGCAGCTGGAC GGGAAAATGGGGAAAGCCCTCTGTAACTGGAGCAGCTGGAC < 41bp 0.85628615524026 0.614183719603052 0.43041745 0.162139 prediction 0.484204871274417 Functional Loss - FGD4 ENSG00000139132 CDS Human protein_coding chr12:32735363 chr12:32735366 stopgain 0.139 0 24 hm5C_associated_SNPs_68289 0 0 0 0 1 FGD4 chr12:32735401 5'GT 32735401 Upstream 36bp
chr12 132241033 132241033 1 + G A LUSC 132241030 + 132241010 132241050 41 ATCTCTAGGCTGTGTCTGCACCAGAAGAGGCTCCCACAGAC ATCTCTAGGCTGTGTCTGCACCAAAAGAGGCTCCCACAGAC < 41bp 0.742102293883854 0.494627674522662 0.27353802 0.14873299 prediction 0.484204587767708 Functional Loss - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132241030 chr12:132241033 nonsynonymous SNV 0.225 2 24 hm5C_associated_SNPs_68290 0 0 1 0 1 SFSWAP chr12:132241018 3'AG 132241018 Downstream 16bp
chr16 31383064 31383064 1 + G A KIRP 31383061 + 31383041 31383081 41 GTCTGAGCCGAGTCCGAGTCCTCGGGCTGAAGGCACACTGT GTCTGAGCCGAGTCCGAGTCCTCAGGCTGAAGGCACACTGT < 41bp 0.764094936121527 0.521993086358845 0.112068504 0.07203013 prediction 0.484203699525363 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31383061 chr16:31383064 nonsynonymous SNV 0.013 1 24 hm5C_associated_SNPs_68291 0 0 0 0 1 ITGAX chr16:31383105 5'GT 31383105 Upstream 42bp
chr19 36272095 36272095 1 + C T LGG 36272093 + 36272073 36272113 41 GCTCCGAGTTCATTGAGGCCCACGGGGTGGTGGATGGGATC GCTCCGAGTTCATTGAGGCCCATGGGGTGGTGGATGGGATC < 41bp 0.773305417330543 0.531203861327812 0.8687818 0.85979676 prediction 0.484203112005461 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36272093 chr19:36272095 synonymous SNV . 0 23 hm5C_associated_SNPs_68292 0 0 0 0 2 ARHGAP33 chr19:36272052 3'AG 36272052 Downstream 44bp
chr19 36272095 36272095 1 + C T LGG 36272093 + 36272073 36272113 41 GCTCCGAGTTCATTGAGGCCCACGGGGTGGTGGATGGGATC GCTCCGAGTTCATTGAGGCCCATGGGGTGGTGGATGGGATC < 41bp 0.773305417330543 0.531203861327812 0.8687818 0.85979676 prediction 0.484203112005461 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36272093 chr19:36272095 synonymous SNV . 0 23 hm5C_associated_SNPs_68292 0 0 0 0 2 ARHGAP33 chr19:36272154 5'GT 36272154 Upstream 60bp
chrX 47040965 47040965 1 + G A COAD 47040962 + 47040942 47040982 41 TGTCGATGCAGGCTTTCTCTCGCGCCCAGCCTGGTGCTGCT TGTCGATGCAGGCTTTCTCTCGCACCCAGCCTGGTGCTGCT < 41bp 0.754711478641433 0.512612483016812 0.8856449 0.70557183 prediction 0.484197991249241 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47040962 chrX:47040965 nonsynonymous SNV 0.472 3 24 hm5C_associated_SNPs_68294 0 0 1 0 2 RBM10 chrX:47040906 3'AG 47040906 Downstream 60bp
chrX 47040965 47040965 1 + G A COAD 47040962 + 47040942 47040982 41 TGTCGATGCAGGCTTTCTCTCGCGCCCAGCCTGGTGCTGCT TGTCGATGCAGGCTTTCTCTCGCACCCAGCCTGGTGCTGCT < 41bp 0.754711478641433 0.512612483016812 0.8856449 0.70557183 prediction 0.484197991249241 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47040962 chrX:47040965 nonsynonymous SNV 0.472 3 24 hm5C_associated_SNPs_68294 0 0 1 0 2 RBM10 chrX:47041045 5'GT 47041045 Upstream 81bp
chr1 55527111 55527111 1 + G A UCEC 55527108 + 55527088 55527128 41 CAAGCCGCCTGTGCTGAGGCCACGAGGTCAGCCCAACCAGT CAAGCCGCCTGTGCTGAGGCCACAAGGTCAGCCCAACCAGT < 41bp 0.742093405868108 0.490666277379155 0.5720568 0.68908215 prediction 0.484186811736216 Functional Loss - PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55527108 chr1:55527111 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_68296 0 0 1 0 1 PCSK9 chr1:55527048 3'AG 55527048 Downstream 64bp
chr19 41066148 41066148 1 + G T STAD 41066146 + 41066126 41066166 41 AGGCCATCGCTAGCCGGGAGCAGGAGGTGCTGCAGGGTTGG AGGCCATCGCTAGCCGGGAGCATGAGGTGCTGCAGGGTTGG < 41bp 0.742088159323492 0.397933666814183 0.91078377 0.87506044 prediction 0.484176318646985 Functional Loss - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41066146 chr19:41066148 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_68300 0 0 0 0 1 SPTBN4 chr19:41066065 3'AG 41066065 Downstream 84bp
chr10 98079146 98079146 1 + C T GBM 98079144 + 98079124 98079164 41 AACAACTGTAACCAGATATTCACGGTAACGGGACTTTACAT AACAACTGTAACCAGATATTCATGGTAACGGGACTTTACAT < 41bp 0.799628846258305 0.557550023831977 0.76328886 0.9078169 prediction 0.484157644852657 Functional Loss - DNTT ENSG00000107447 CDS Human protein_coding chr10:98079144 chr10:98079146 nonsynonymous SNV 0.936 4 23 hm5C_associated_SNPs_68303 0 0 0 0 1 DNTT chr10:98079147 5'GT 98079147 Upstream 2bp
chr1 200869303 200869303 1 + G A SKCM 200869300 + 200869280 200869320 41 AAGGCCCCCAAGGTTCGCCGCAGGATCGGAGCGGCTTACAA AAGGCCCCCAAGGTTCGCCGCAGAATCGGAGCGGCTTACAA < 41bp 0.745221600790631 0.503143637480386 0.76598346 0.4139935 prediction 0.48415592662049 Functional Loss - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200869300 chr1:200869303 synonymous SNV . 0 24 hm5C_associated_SNPs_68304 0 0 0 0 2 C1orf106 chr1:200869232 3'AG 200869232 Downstream 72bp
chr1 200869303 200869303 1 + G A SKCM 200869300 + 200869280 200869320 41 AAGGCCCCCAAGGTTCGCCGCAGGATCGGAGCGGCTTACAA AAGGCCCCCAAGGTTCGCCGCAGAATCGGAGCGGCTTACAA < 41bp 0.745221600790631 0.503143637480386 0.76598346 0.4139935 prediction 0.48415592662049 Functional Loss - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200869300 chr1:200869303 synonymous SNV . 0 24 hm5C_associated_SNPs_68304 0 0 0 0 2 C1orf106 chr1:200869348 5'GT 200869348 Upstream 46bp
chr7 148486869 148486869 1 + C T UCEC 148486867 + 148486847 148486887 41 TTCAGCATTCAAGTGCTGAGCTCCGGGTCCTGGCCCTTCCA TTCAGCATTCAAGTGCTGAGCTTCGGGTCCTGGCCCTTCCA < 41bp 0.742077871443409 0.457141759996921 0.26420552 0.16374663 prediction 0.484155742886817 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148486867 chr7:148486869 nonsynonymous SNV 0.225 4 23 hm5C_associated_SNPs_68305 0 0 1 0 2 CUL1 chr7:148486842 3'AG 148486842 Downstream 28bp
chr7 148486869 148486869 1 + C T UCEC 148486867 + 148486847 148486887 41 TTCAGCATTCAAGTGCTGAGCTCCGGGTCCTGGCCCTTCCA TTCAGCATTCAAGTGCTGAGCTTCGGGTCCTGGCCCTTCCA < 41bp 0.742077871443409 0.457141759996921 0.26420552 0.16374663 prediction 0.484155742886817 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148486867 chr7:148486869 nonsynonymous SNV 0.225 4 23 hm5C_associated_SNPs_68305 0 0 1 0 2 CUL1 chr7:148486918 5'GT 148486918 Upstream 50bp
chr1 156347189 156347189 1 + C T LUSC 156347187 + 156347167 156347207 41 GCAGCGTGGGCTTCACCTTCCTCCTGGCCGCCTTTGCCCTG GCAGCGTGGGCTTCACCTTCCTTCTGGCCGCCTTTGCCCTG < 41bp 0.742073081376771 0.472885267900557 0.38122827 0.17869833 prediction 0.484146162753541 Functional Loss - RHBG ENSG00000132677 CDS Human protein_coding chr1:156347187 chr1:156347189 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_68306 0 0 0 0 2 RHBG chr1:156347092 3'AG 156347092 Downstream 98bp
chr1 156347189 156347189 1 + C T LUSC 156347187 + 156347167 156347207 41 GCAGCGTGGGCTTCACCTTCCTCCTGGCCGCCTTTGCCCTG GCAGCGTGGGCTTCACCTTCCTTCTGGCCGCCTTTGCCCTG < 41bp 0.742073081376771 0.472885267900557 0.38122827 0.17869833 prediction 0.484146162753541 Functional Loss - RHBG ENSG00000132677 CDS Human protein_coding chr1:156347187 chr1:156347189 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_68306 0 0 0 0 2 RHBG chr1:156347278 5'GT 156347278 Upstream 90bp
chr11 111385666 111385666 1 + C T CESC 111385664 + 111385644 111385684 41 GATGTATCCCCCTAGCGAATCTCAGCTGGTGCTGCGCAGAG GATGTATCCCCCTAGCGAATCTTAGCTGGTGCTGCGCAGAG < 41bp 0.742070626038125 0.481807611938644 0.18712008 0.18443191 prediction 0.48414125207625 Functional Loss - C11orf88 ENSG00000183644 CDS Human protein_coding chr11:111385664 chr11:111385666 stopgain 0.738 0 23 hm5C_associated_SNPs_68307 0 0 0 0 1 C11orf88 chr11:111385735 5'GT 111385735 Upstream 70bp
chr21 45732051 45732051 1 + G T SARC 45732049 + 45732029 45732069 41 CACCAGGGAGGGGCGCCGGGCAGCGGCCTACAACCTGGTCC CACCAGGGAGGGGCGCCGGGCATCGGCCTACAACCTGGTCC < 41bp 0.742067216116952 0.390489883180063 0.73856884 0.5804213 prediction 0.484134432233905 Functional Loss - PFKL ENSG00000141959 CDS Human protein_coding chr21:45732049 chr21:45732051 nonsynonymous SNV 0.789 3 23 hm5C_associated_SNPs_68309 0 0 1 0 1 PFKL chr21:45731988 3'AG 45731988 Downstream 64bp
chr17 78163628 78163628 1 + C T COAD 78163626 + 78163606 78163646 41 GAGCTGGTGGAGCGCATCCACTCGCTGCGGGAGCGGGCCGT GAGCTGGTGGAGCGCATCCACTTGCTGCGGGAGCGGGCCGT < 41bp 0.800105478088718 0.5580383835305 0.44814894 0.11424258 prediction 0.484134189116435 Functional Loss - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78163626 chr17:78163628 nonsynonymous SNV 0.604 2 23 hm5C_associated_SNPs_68310 0 0 0 0 2 CARD14 chr17:78163552 3'AG 78163552 Downstream 77bp
chr17 78163628 78163628 1 + C T COAD 78163626 + 78163606 78163646 41 GAGCTGGTGGAGCGCATCCACTCGCTGCGGGAGCGGGCCGT GAGCTGGTGGAGCGCATCCACTTGCTGCGGGAGCGGGCCGT < 41bp 0.800105478088718 0.5580383835305 0.44814894 0.11424258 prediction 0.484134189116435 Functional Loss - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78163626 chr17:78163628 nonsynonymous SNV 0.604 2 23 hm5C_associated_SNPs_68310 0 0 0 0 2 CARD14 chr17:78163671 5'GT 78163671 Upstream 44bp
chr22 23503094 23503094 1 + C T STAD 23503092 + 23503072 23503112 41 ACGTGAAGGCATTCTTCAGCCGCGTAGCCGCCCTGGCATTC ACGTGAAGGCATTCTTCAGCCGTGTAGCCGCCCTGGCATTC < 41bp 0.810960634678923 0.56889941416792 0.11440888 0.21676084 prediction 0.484122441022006 Functional Loss - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23503092 chr22:23503094 synonymous SNV . 0 23 hm5C_associated_SNPs_68311 0 0 0 0 2 RAB36 chr22:23503066 3'AG 23503066 Downstream 29bp
chr22 23503094 23503094 1 + C T STAD 23503092 + 23503072 23503112 41 ACGTGAAGGCATTCTTCAGCCGCGTAGCCGCCCTGGCATTC ACGTGAAGGCATTCTTCAGCCGTGTAGCCGCCCTGGCATTC < 41bp 0.810960634678923 0.56889941416792 0.11440888 0.21676084 prediction 0.484122441022006 Functional Loss - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23503092 chr22:23503094 synonymous SNV . 0 23 hm5C_associated_SNPs_68311 0 0 0 0 2 RAB36 chr22:23503185 5'GT 23503185 Upstream 92bp
chrX 48681417 48681417 1 + C T UCEC 48681415 + 48681395 48681435 41 GTTAGCTGAGCGGATGACCACACGAGAAAAGAAGGTTCTGG GTTAGCTGAGCGGATGACCACATGAGAAAAGAAGGTTCTGG < 41bp 0.78300512027903 0.540953148398989 0.51369834 0.54608 prediction 0.484103943760081 Functional Loss - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48681415 chrX:48681417 stopgain 0.036 0 23 hm5C_associated_SNPs_68313 0 0 1 0 1 HDAC6 chrX:48681322 3'AG 48681322 Downstream 96bp
chr4 100460510 100460510 1 + A T LUAD 100460506 + 100460486 100460526 41 AAAAGTGCTGACCAGAGATACAGAAGGGGATCAACCAACCA AAAAGTGCTGACCAGAGATACAGATGGGGATCAACCAACCA < 41bp 0.742049501428603 0.437863470483585 0.41822675 0.22104156 prediction 0.484099002857207 Functional Loss - C4orf17 ENSG00000138813 CDS Human protein_coding chr4:100460506 chr4:100460510 nonsynonymous SNV 0.018 1 25 hm5C_associated_SNPs_68314 0 0 0 0 1 C4orf17 chr4:100460527 5'GT 100460527 Upstream 18bp
chr14 105958612 105958612 1 + G A SKCM 105958609 + 105958589 105958629 41 CGAGCAGATGCTGGCCCAGGCCCGAGTGCCTCTGGGTGACG CGAGCAGATGCTGGCCCAGGCCCAAGTGCCTCTGGGTGACG < 41bp 0.755355651109601 0.513306994001325 0.27422622 0.13263527 prediction 0.484097314216551 Functional Loss - C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105958609 chr14:105958612 nonsynonymous SNV 0.012 1 24 hm5C_associated_SNPs_68315 0 0 1 0 1 C14orf80 chr14:105958646 5'GT 105958646 Upstream 35bp
chr16 84228066 84228066 1 + C T DLBC 84228064 + 84228044 84228084 41 CCAGGTCCCTGCTTCCCCTTCTCGGTGAGCGCGGAACTGGA CCAGGTCCCTGCTTCCCCTTCTTGGTGAGCGCGGAACTGGA < 41bp 0.742044381727593 0.479539051205367 0.31238228 0.30936694 prediction 0.484088763455185 Functional Loss - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84228064 chr16:84228066 nonsynonymous SNV 0.038 1 23 hm5C_associated_SNPs_68318 0 0 0 0 1 ADAD2 chr16:84228048 3'AG 84228048 Downstream 19bp
chr2 201492122 201492122 1 + A T OV 201492118 + 201492098 201492138 41 CCTTCAAGCCAGAAAGGAAACTGGAATATGGAAATGTTGAC CCTTCAAGCCAGAAAGGAAACTGGTATATGGAAATGTTGAC < 41bp 0.742043600391823 0.411336609729721 0.115869164 0.120052814 prediction 0.484087200783646 Functional Loss - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201492118 chr2:201492122 nonsynonymous SNV 0.991 2 25 hm5C_associated_SNPs_68319 0 0 0 0 2 AOX1 chr2:201492076 3'AG 201492076 Downstream 47bp
chr2 201492122 201492122 1 + A T OV 201492118 + 201492098 201492138 41 CCTTCAAGCCAGAAAGGAAACTGGAATATGGAAATGTTGAC CCTTCAAGCCAGAAAGGAAACTGGTATATGGAAATGTTGAC < 41bp 0.742043600391823 0.411336609729721 0.115869164 0.120052814 prediction 0.484087200783646 Functional Loss - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201492118 chr2:201492122 nonsynonymous SNV 0.991 2 25 hm5C_associated_SNPs_68319 0 0 0 0 2 AOX1 chr2:201492172 5'GT 201492172 Upstream 51bp
chr17 76490157 76490157 1 + G A SKCM 76490154 + 76490134 76490174 41 CCCGCATTCCCGACGATGAACACGGAGTGGCGGACCTGCAG CCCGCATTCCCGACGATGAACACAGAGTGGCGGACCTGCAG < 41bp 0.743284270665974 0.501243888281134 0.42152306 0.2592274 prediction 0.484080764769681 Functional Loss - DNAH17 ENSG00000187775 CDS Human processed_transcript chr17:76490154 chr17:76490157 synonymous SNV . 0 24 hm5C_associated_SNPs_68320 0 0 0 0 1 DNAH17-AS1 chr17:76490096 3'AG 76490096 Downstream 62bp
chr16 2578332 2578332 1 + G A STAD 2578329 + 2578309 2578349 41 TATGGGATGATTGCAGATGGCACGCACACCAACCCCGCCGC TATGGGATGATTGCAGATGGCACACACACCAACCCCGCCGC < 41bp 0.744046822519945 0.502009283481576 0.12912253 0.115109235 prediction 0.484075078076738 Functional Loss - AMDHD2 ENSG00000162066 CDS Human protein_coding chr16:2578329 chr16:2578332 synonymous SNV . 0 24 hm5C_associated_SNPs_68321 0 0 1 0 1 AMDHD2 chr16:2578237 3'AG 2578237 Downstream 96bp
chr19 56473506 56473506 1 + G A SKCM 56473503 + 56473483 56473523 41 TGTTTGCAACGAATGATAAGCTGGAAGTCCTGACTATGACC TGTTTGCAACGAATGATAAGCTGAAAGTCCTGACTATGACC < 41bp 0.749680479896425 0.507646292822275 0.33180094 0.25909275 prediction 0.4840683741483 Functional Loss - NLRP8 ENSG00000179709 CDS Human protein_coding chr19:56473503 chr19:56473506 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_68322 0 0 0 0 2 NLRP8 chr19:56473433 3'AG 56473433 Downstream 74bp
chr19 56473506 56473506 1 + G A SKCM 56473503 + 56473483 56473523 41 TGTTTGCAACGAATGATAAGCTGGAAGTCCTGACTATGACC TGTTTGCAACGAATGATAAGCTGAAAGTCCTGACTATGACC < 41bp 0.749680479896425 0.507646292822275 0.33180094 0.25909275 prediction 0.4840683741483 Functional Loss - NLRP8 ENSG00000179709 CDS Human protein_coding chr19:56473503 chr19:56473506 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_68322 0 0 0 0 2 NLRP8 chr19:56473603 5'GT 56473603 Upstream 98bp
chr3 38048106 38048106 1 + C T PRAD 38048104 + 38048084 38048124 41 TCCGTCAGCAGCACCAGCGCCACGATCAACGGGGGCCTGCG TCCGTCAGCAGCACCAGCGCCATGATCAACGGGGGCCTGCG < 41bp 0.74203393453705 0.470203729869558 0.27603143 0.21898434 prediction 0.484067869074099 Functional Loss - VILL ENSG00000136059 CDS Human protein_coding chr3:38048104 chr3:38048106 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_68324 0 0 0 0 1 VILL chr3:38048191 5'GT 38048191 Upstream 86bp
chr2 203560615 203560615 1 + C T UCEC 203560613 + 203560593 203560633 41 CTTAAATCTAGGTGACAAAACACGACAGCCTTCTTCAAGCC CTTAAATCTAGGTGACAAAACATGACAGCCTTCTTCAAGCC < 41bp 0.742032596536778 0.454495710318912 0.33604044 0.1757093 prediction 0.484065193073556 Functional Loss - FAM117B ENSG00000138439 CDS Human protein_coding chr2:203560613 chr2:203560615 stopgain 0.991 0 23 hm5C_associated_SNPs_68326 0 0 0 0 1 FAM117B chr2:203560604 3'AG 203560604 Downstream 12bp
chr11 34680084 34680084 1 + G C BLCA 34680083 + 34680063 34680103 41 TTTCTGCTTTTCATCAGACCCGAGAGGGACTCACTTATGGG TTTCTGCTTTTCATCAGACCCCAGAGGGACTCACTTATGGG < 41bp 0.742032051504582 0.448893205459363 0.36089915 0.0873189 prediction 0.484064103009163 Functional Loss - EHF ENSG00000135373 CDS Human protein_coding chr11:34680083 chr11:34680084 synonymous SNV . 0 22 hm5C_associated_SNPs_68327 0 0 0 0 1 EHF chr11:34680080 3'AG 34680080 Downstream 5bp
chr17 34842785 34842785 1 + G C SARC 34842784 + 34842764 34842804 41 CCTCTGTTGTTACAGCTGCTCGGTAGTCTGCTTCCGGAAGC CCTCTGTTGTTACAGCTGCTCCGTAGTCTGCTTCCGGAAGC < 41bp 0.862003488747203 0.619980403650789 0.14791915 0.057676226 prediction 0.484046170192829 Functional Loss - ZNHIT3 ENSG00000108278 CDS Human other chr17:34842784 chr17:34842785 synonymous SNV . 0 22 hm5C_associated_SNPs_68330 0 0 1 0 2 ZNHIT3 chr17:34842779 3'AG 34842779 Downstream 7bp
chr17 34842785 34842785 1 + G C SARC 34842784 + 34842764 34842804 41 CCTCTGTTGTTACAGCTGCTCGGTAGTCTGCTTCCGGAAGC CCTCTGTTGTTACAGCTGCTCCGTAGTCTGCTTCCGGAAGC < 41bp 0.862003488747203 0.619980403650789 0.14791915 0.057676226 prediction 0.484046170192829 Functional Loss - ZNHIT3 ENSG00000108278 CDS Human other chr17:34842784 chr17:34842785 synonymous SNV . 0 22 hm5C_associated_SNPs_68330 0 0 1 0 2 ZNHIT3 chr17:34842810 5'GT 34842810 Upstream 26bp
chr3 14508101 14508101 1 + G A OV 14508098 + 14508078 14508118 41 CGAGGGCTGACGCTGCCGGGCGCGGGCGCAGGCATCAAGTT CGAGGGCTGACGCTGCCGGGCGCAGGCGCAGGCATCAAGTT < 41bp 0.742020837872934 0.492856426488261 0.4824392 0.4640234 prediction 0.484041675745868 Functional Loss - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14508098 chr3:14508101 synonymous SNV . 0 24 hm5C_associated_SNPs_68331 0 0 1 0 2 SLC6A6 chr3:14508024 3'AG 14508024 Downstream 78bp
chr3 14508101 14508101 1 + G A OV 14508098 + 14508078 14508118 41 CGAGGGCTGACGCTGCCGGGCGCGGGCGCAGGCATCAAGTT CGAGGGCTGACGCTGCCGGGCGCAGGCGCAGGCATCAAGTT < 41bp 0.742020837872934 0.492856426488261 0.4824392 0.4640234 prediction 0.484041675745868 Functional Loss - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14508098 chr3:14508101 synonymous SNV . 0 24 hm5C_associated_SNPs_68331 0 0 1 0 2 SLC6A6 chr3:14508158 5'GT 14508158 Upstream 58bp
chr3 14508100 14508100 1 + C T UCEC 14508098 + 14508078 14508118 41 CGAGGGCTGACGCTGCCGGGCGCGGGCGCAGGCATCAAGTT CGAGGGCTGACGCTGCCGGGCGTGGGCGCAGGCATCAAGTT < 41bp 0.742020837872934 0.477027508699955 0.4824392 0.5032212 prediction 0.484041675745868 Functional Loss - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14508098 chr3:14508100 nonsynonymous SNV 0.012 3 23 hm5C_associated_SNPs_68332 0 0 1 0 2 SLC6A6 chr3:14508024 3'AG 14508024 Downstream 77bp
chr3 14508100 14508100 1 + C T UCEC 14508098 + 14508078 14508118 41 CGAGGGCTGACGCTGCCGGGCGCGGGCGCAGGCATCAAGTT CGAGGGCTGACGCTGCCGGGCGTGGGCGCAGGCATCAAGTT < 41bp 0.742020837872934 0.477027508699955 0.4824392 0.5032212 prediction 0.484041675745868 Functional Loss - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14508098 chr3:14508100 nonsynonymous SNV 0.012 3 23 hm5C_associated_SNPs_68332 0 0 1 0 2 SLC6A6 chr3:14508158 5'GT 14508158 Upstream 59bp
chr7 55223545 55223545 1 + C T TGCT 55223543 + 55223523 55223563 41 GTAATTATGTGGTGACAGATCACGGCTCGTGCGTCCGAGCC GTAATTATGTGGTGACAGATCATGGCTCGTGCGTCCGAGCC < 41bp 0.7925880887782 0.550572820362958 0.5917827 0.6288737 prediction 0.484030536830485 Functional Loss - EGFR ENSG00000146648 CDS Human protein_coding chr7:55223543 chr7:55223545 synonymous SNV . 0 23 hm5C_associated_SNPs_68335 0 0 1 0 2 EGFR chr7:55223523 3'AG 55223523 Downstream 23bp
chr7 55223545 55223545 1 + C T TGCT 55223543 + 55223523 55223563 41 GTAATTATGTGGTGACAGATCACGGCTCGTGCGTCCGAGCC GTAATTATGTGGTGACAGATCATGGCTCGTGCGTCCGAGCC < 41bp 0.7925880887782 0.550572820362958 0.5917827 0.6288737 prediction 0.484030536830485 Functional Loss - EGFR ENSG00000146648 CDS Human protein_coding chr7:55223543 chr7:55223545 synonymous SNV . 0 23 hm5C_associated_SNPs_68335 0 0 1 0 2 EGFR chr7:55223639 5'GT 55223639 Upstream 95bp
chr10 96971650 96971650 1 + C T SKCM 96971648 + 96971628 96971668 41 TCTTTAGACGGTGGATGGATCTCCAGCCAACAGATGTCTTG TCTTTAGACGGTGGATGGATCTTCAGCCAACAGATGTCTTG < 41bp 0.836193459574241 0.594195543007081 0.87115204 0.07525414 prediction 0.483995833134321 Functional Loss - ACSM6 ENSG00000173124 CDS Human protein_coding chr10:96971648 chr10:96971650 synonymous SNV . 0 23 hm5C_associated_SNPs_68340 0 0 0 0 1 ACSM6 chr10:96971635 3'AG 96971635 Downstream 16bp
chr19 41515984 41515984 1 + C T KIRC 41515982 + 41515962 41516002 41 TTCTTTGCTGGCACTGAGACCACCAGCACCACTCTCCGCTA TTCTTTGCTGGCACTGAGACCATCAGCACCACTCTCCGCTA < 41bp 0.828794530560301 0.586799122339254 0.0980722 0.08575952 prediction 0.483990816442094 Functional Loss - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41515982 chr19:41515984 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_68342 0 0 0 0 2 CYP2B6 chr19:41515899 3'AG 41515899 Downstream 86bp
chr19 41515984 41515984 1 + C T KIRC 41515982 + 41515962 41516002 41 TTCTTTGCTGGCACTGAGACCACCAGCACCACTCTCCGCTA TTCTTTGCTGGCACTGAGACCATCAGCACCACTCTCCGCTA < 41bp 0.828794530560301 0.586799122339254 0.0980722 0.08575952 prediction 0.483990816442094 Functional Loss - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41515982 chr19:41515984 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_68342 0 0 0 0 2 CYP2B6 chr19:41516040 5'GT 41516040 Upstream 57bp
chr2 29258385 29258385 1 + G A rs115740613 29258382 + 29258362 29258402 41 TGCGCTCCACACTGCAGGGCCGCGGGGAGATGGTGGAGCAG TGCGCTCCACACTGCAGGGCCGCAGGGAGATGGTGGAGCAG < 41bp 0.779226604503374 0.53723375114126 0.78550863 0.5899122 prediction 0.483985706724229 Functional Loss - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29258382 chr2:29258385 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_68344 0 0 0 0 1 TOGARAM2 chr2:29258330 3'AG 29258330 Downstream 56bp
chr2 189869026 189869026 1 + G A SKCM 189869023 + 189869003 189869043 41 GATTGCTGGGATCACTGGAGCACGGGGTCTTGCAGGACCAC GATTGCTGGGATCACTGGAGCACAGGGTCTTGCAGGACCAC < 41bp 0.741991939267048 0.497313005052267 0.8882756 0.60431796 prediction 0.483983878534097 Functional Loss - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189869023 chr2:189869026 nonsynonymous SNV 0.973 2 24 hm5C_associated_SNPs_68345 0 0 0 0 2 COL3A1 chr2:189868983 3'AG 189868983 Downstream 44bp
chr2 189869026 189869026 1 + G A SKCM 189869023 + 189869003 189869043 41 GATTGCTGGGATCACTGGAGCACGGGGTCTTGCAGGACCAC GATTGCTGGGATCACTGGAGCACAGGGTCTTGCAGGACCAC < 41bp 0.741991939267048 0.497313005052267 0.8882756 0.60431796 prediction 0.483983878534097 Functional Loss - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189869023 chr2:189869026 nonsynonymous SNV 0.973 2 24 hm5C_associated_SNPs_68345 0 0 0 0 2 COL3A1 chr2:189869090 5'GT 189869090 Upstream 65bp
chr3 3178966 3178966 1 + C T GBM 3178964 + 3178944 3178984 41 AATTATTTGTCAAAGAGAATCACGAATTAAGAATAGCAGGA AATTATTTGTCAAAGAGAATCATGAATTAAGAATAGCAGGA < 41bp 0.741988234907487 0.46948829751324 0.15241009 0.41655266 prediction 0.483976469814974 Functional Loss - TRNT1 ENSG00000072756 CDS Human protein_coding chr3:3178964 chr3:3178966 synonymous SNV . 0 23 hm5C_associated_SNPs_68348 0 0 1 0 1 TRNT1 chr3:3178944 3'AG 3178944 Downstream 23bp
chr14 93688699 93688699 1 + G T COAD 93688696 + 93688676 93688716 41 ACTGAACTTAAAGACTATCTCAAGAGATTTGCTGATGAAGG ACTGAACTTAAAGACTATCTCAATAGATTTGCTGATGAAGG < 41bp 0.74198171546868 0.363698894244729 0.8740864 0.1110003 prediction 0.48396343093736 Functional Loss - UBR7 ENSG00000012963 CDS Human protein_coding chr14:93688696 chr14:93688699 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_68350 0 0 1 0 2 UBR7 chr14:93688659 3'AG 93688659 Downstream 41bp
chr14 93688699 93688699 1 + G T COAD 93688696 + 93688676 93688716 41 ACTGAACTTAAAGACTATCTCAAGAGATTTGCTGATGAAGG ACTGAACTTAAAGACTATCTCAATAGATTTGCTGATGAAGG < 41bp 0.74198171546868 0.363698894244729 0.8740864 0.1110003 prediction 0.48396343093736 Functional Loss - UBR7 ENSG00000012963 CDS Human protein_coding chr14:93688696 chr14:93688699 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_68350 0 0 1 0 2 UBR7 chr14:93688720 5'GT 93688720 Upstream 22bp
chrX 49106029 49106029 1 + G T UCEC 49106026 + 49106006 49106046 41 AAGTATCTAGCTGCTCTGCACGAGGTGAGGGGAGACATGTG AAGTATCTAGCTGCTCTGCACGATGTGAGGGGAGACATGTG < 41bp 0.741980182699078 0.338654009018801 0.8682766 0.13309574 prediction 0.483960365398155 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49106026 chrX:49106029 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_68352 0 0 0 0 2 CCDC22 chrX:49105970 3'AG 49105970 Downstream 60bp
chrX 49106029 49106029 1 + G T UCEC 49106026 + 49106006 49106046 41 AAGTATCTAGCTGCTCTGCACGAGGTGAGGGGAGACATGTG AAGTATCTAGCTGCTCTGCACGATGTGAGGGGAGACATGTG < 41bp 0.741980182699078 0.338654009018801 0.8682766 0.13309574 prediction 0.483960365398155 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49106026 chrX:49106029 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_68352 0 0 0 0 2 CCDC22 chrX:49106029 5'GT 49106029 Upstream 1bp
chr11 22291892 22291892 1 + C T rs139303302 22291890 + 22291870 22291910 41 TTGGTGGAGACGCCGAAAAGCTCGGACAAACTCTGAGAAGC TTGGTGGAGACGCCGAAAAGCTTGGACAAACTCTGAGAAGC < 41bp 0.741976709856682 0.454676962107366 0.03521797 0.03172472 prediction 0.483953419713365 Functional Loss - ANO5 ENSG00000171714 CDS Human protein_coding chr11:22291890 chr11:22291892 nonsynonymous SNV 0.817 4 23 hm5C_associated_SNPs_68354 0 0 0 0 2 ANO5 chr11:22291858 3'AG 22291858 Downstream 35bp
chr11 22291892 22291892 1 + C T rs139303302 22291890 + 22291870 22291910 41 TTGGTGGAGACGCCGAAAAGCTCGGACAAACTCTGAGAAGC TTGGTGGAGACGCCGAAAAGCTTGGACAAACTCTGAGAAGC < 41bp 0.741976709856682 0.454676962107366 0.03521797 0.03172472 prediction 0.483953419713365 Functional Loss - ANO5 ENSG00000171714 CDS Human protein_coding chr11:22291890 chr11:22291892 nonsynonymous SNV 0.817 4 23 hm5C_associated_SNPs_68354 0 0 0 0 2 ANO5 chr11:22291988 5'GT 22291988 Upstream 97bp
chr12 108082471 108082471 1 + C T ESCA 108082469 + 108082449 108082489 41 GCAGAGTGCACGCACCCAGGCACGCCCAAGAGAGCCCCTGG GCAGAGTGCACGCACCCAGGCATGCCCAAGAGAGCCCCTGG < 41bp 0.74195582777234 0.477849696058552 0.039429635 0.04821527 prediction 0.48391165554468 Functional Loss - PWP1 ENSG00000136045 CDS Human protein_coding chr12:108082469 chr12:108082471 nonsynonymous SNV 0.980 1 23 hm5C_associated_SNPs_68363 0 0 1 0 1 PWP1 chr12:108082392 3'AG 108082392 Downstream 80bp
chr4 5830267 5830267 1 + C T COAD 5830265 + 5830245 5830285 41 GGTGCTCCGGGAACGCCTTCCGCGGAATGAAGCGGCCCATG GGTGCTCCGGGAACGCCTTCCGTGGAATGAAGCGGCCCATG < 41bp 0.763933979581948 0.521978416745208 0.9066111 0.88763905 prediction 0.483911125673479 Functional Loss - CRMP1 ENSG00000072832 CDS Human protein_coding chr4:5830265 chr4:5830267 synonymous SNV . 0 23 hm5C_associated_SNPs_68364 0 0 0 0 1 CRMP1 chr4:5830246 3'AG 5830246 Downstream 22bp
chr1 246797303 246797303 1 + G T UCEC 246797300 + 246797280 246797320 41 TCGCAAATCTTTCTGCCATTCAAGAACAGTGGGGTAAGTAC TCGCAAATCTTTCTGCCATTCAATAACAGTGGGGTAAGTAC < 41bp 0.74195548449253 0.35683826798951 0.85827583 0.2016123 prediction 0.48391096898506 Functional Loss - CNST ENSG00000162852 CDS Human protein_coding chr1:246797300 chr1:246797303 stopgain 0.998 1 24 hm5C_associated_SNPs_68365 0 0 1 0 2 CNST chr1:246797226 3'AG 246797226 Downstream 78bp
chr1 246797303 246797303 1 + G T UCEC 246797300 + 246797280 246797320 41 TCGCAAATCTTTCTGCCATTCAAGAACAGTGGGGTAAGTAC TCGCAAATCTTTCTGCCATTCAATAACAGTGGGGTAAGTAC < 41bp 0.74195548449253 0.35683826798951 0.85827583 0.2016123 prediction 0.48391096898506 Functional Loss - CNST ENSG00000162852 CDS Human protein_coding chr1:246797300 chr1:246797303 stopgain 0.998 1 24 hm5C_associated_SNPs_68365 0 0 1 0 2 CNST chr1:246797312 5'GT 246797312 Upstream 10bp
chr12 45803213 45803213 1 + G T KIRP 45803210 + 45803190 45803230 41 AGATAACCCCACGATGGGAACAGGACTACCATCTGCAGCCT AGATAACCCCACGATGGGAACAGTACTACCATCTGCAGCCT < 41bp 0.741954195014196 0.350270263120032 0.36903024 0.05137244 prediction 0.483908390028392 Functional Loss - ANO6 ENSG00000177119 CDS Human protein_coding chr12:45803210 chr12:45803213 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_68366 0 0 0 0 2 ANO6 chr12:45803140 3'AG 45803140 Downstream 74bp
chr12 45803213 45803213 1 + G T KIRP 45803210 + 45803190 45803230 41 AGATAACCCCACGATGGGAACAGGACTACCATCTGCAGCCT AGATAACCCCACGATGGGAACAGTACTACCATCTGCAGCCT < 41bp 0.741954195014196 0.350270263120032 0.36903024 0.05137244 prediction 0.483908390028392 Functional Loss - ANO6 ENSG00000177119 CDS Human protein_coding chr12:45803210 chr12:45803213 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_68366 0 0 0 0 2 ANO6 chr12:45803270 5'GT 45803270 Upstream 58bp
chr1 159779223 159779223 1 + C T SKCM 159779221 + 159779201 159779241 41 CCCGTCCTGTGCTCACTCTGCACCACGGGCCTGCTGACCCT CCCGTCCTGTGCTCACTCTGCATCACGGGCCTGCTGACCCT < 41bp 0.807587808752135 0.565635626497214 0.051697344 0.08618045 prediction 0.483904364509841 Functional Loss - FCRL6 ENSG00000181036 CDS Human protein_coding chr1:159779221 chr1:159779223 synonymous SNV . 0 23 hm5C_associated_SNPs_68367 0 0 0 0 1 FCRL6 chr1:159779192 3'AG 159779192 Downstream 32bp
chr1 160385651 160385651 1 + G T LUAD 160385648 + 160385628 160385668 41 ATGGACACCGAGTCCCAGTACTCGGGCTATTCCTACAAGTC ATGGACACCGAGTCCCAGTACTCTGGCTATTCCTACAAGTC < 41bp 0.741949336516049 0.34350512447432 0.07160726 0.06823373 prediction 0.483898673032098 Functional Loss - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160385648 chr1:160385651 synonymous SNV . 0 24 hm5C_associated_SNPs_68369 0 0 1 0 1 VANGL2 chr1:160385698 5'GT 160385698 Upstream 48bp
chr7 129769318 129769318 1 + G T UCEC 129769315 + 129769295 129769335 41 GCTATAATGGAGAGGTGATCCTGGGAGATATCTGGAAGTTG GCTATAATGGAGAGGTGATCCTGTGAGATATCTGGAAGTTG < 41bp 0.741946022288456 0.355790517837066 0.89850867 0.75468993 prediction 0.483892044576911 Functional Loss - KLHDC10 ENSG00000128607 CDS Human protein_coding chr7:129769315 chr7:129769318 stopgain 1.000 1 24 hm5C_associated_SNPs_68370 0 0 1 0 2 KLHDC10 chr7:129769277 3'AG 129769277 Downstream 42bp
chr7 129769318 129769318 1 + G T UCEC 129769315 + 129769295 129769335 41 GCTATAATGGAGAGGTGATCCTGGGAGATATCTGGAAGTTG GCTATAATGGAGAGGTGATCCTGTGAGATATCTGGAAGTTG < 41bp 0.741946022288456 0.355790517837066 0.89850867 0.75468993 prediction 0.483892044576911 Functional Loss - KLHDC10 ENSG00000128607 CDS Human protein_coding chr7:129769315 chr7:129769318 stopgain 1.000 1 24 hm5C_associated_SNPs_68370 0 0 1 0 2 KLHDC10 chr7:129769416 5'GT 129769416 Upstream 99bp
chr1 207658858 207658858 1 + C T UCEC 207658856 + 207658836 207658876 41 AGAAGCTTTTCATTTAGAAGCACGAGAAGTATATTCTGTTG AGAAGCTTTTCATTTAGAAGCATGAGAAGTATATTCTGTTG < 41bp 0.741933342322287 0.474607977123507 0.07718983 0.12042603 prediction 0.483866684644574 Functional Loss - CR2 ENSG00000117322 CDS Human protein_coding chr1:207658856 chr1:207658858 stopgain 0.990 0 23 hm5C_associated_SNPs_68373 0 0 0 0 2 CR2 chr1:207658809 3'AG 207658809 Downstream 50bp
chr1 207658858 207658858 1 + C T UCEC 207658856 + 207658836 207658876 41 AGAAGCTTTTCATTTAGAAGCACGAGAAGTATATTCTGTTG AGAAGCTTTTCATTTAGAAGCATGAGAAGTATATTCTGTTG < 41bp 0.741933342322287 0.474607977123507 0.07718983 0.12042603 prediction 0.483866684644574 Functional Loss - CR2 ENSG00000117322 CDS Human protein_coding chr1:207658856 chr1:207658858 stopgain 0.990 0 23 hm5C_associated_SNPs_68373 0 0 0 0 2 CR2 chr1:207658917 5'GT 207658917 Upstream 60bp
chr4 57891648 57891648 1 + C T LUSC 57891646 + 57891626 57891666 41 GGTGGATGATAAGATTCACTCTCGTGCTAGGGGACCTATTC GGTGGATGATAAGATTCACTCTTGTGCTAGGGGACCTATTC < 41bp 0.741933031916515 0.45839094969236 0.19048697 0.108151466 prediction 0.48386606383303 Functional Loss - POLR2B ENSG00000047315 CDS Human protein_coding chr4:57891646 chr4:57891648 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_68374 0 0 1 0 1 POLR2B chr4:57891703 5'GT 57891703 Upstream 56bp
chr20 56934720 56934720 1 + C T SKCM 56934718 + 56934698 56934738 41 CTGGCGGTAAGGGCTTCAAACTCCGAAGACAGCCTTCAGAG CTGGCGGTAAGGGCTTCAAACTTCGAAGACAGCCTTCAGAG < 41bp 0.821678591770547 0.579748450346781 0.29445872 0.28361386 prediction 0.483860282847532 Functional Loss - RAB22A ENSG00000124209 CDS Human protein_coding chr20:56934718 chr20:56934720 synonymous SNV . 0 23 hm5C_associated_SNPs_68376 0 0 1 0 1 RAB22A chr20:56934662 3'AG 56934662 Downstream 59bp
chr13 46287395 46287395 1 + C T STAD 46287393 + 46287373 46287413 41 CGCGCAGCAGGCCGCCCTGCCCCGGCTGAGCCGCAGGATGG CGCGCAGCAGGCCGCCCTGCCCTGGCTGAGCCGCAGGATGG < 41bp 0.753597825491755 0.511672833988143 0.16914183 0.12708864 prediction 0.483849983007224 Functional Loss - SPERT ENSG00000174015 CDS Human protein_coding chr13:46287393 chr13:46287395 nonsynonymous SNV 0.030 3 23 hm5C_associated_SNPs_68380 0 0 0 0 1 SPERT chr13:46287317 3'AG 46287317 Downstream 79bp
chr2 88485461 88485461 1 + C T LUSC 88485459 + 88485439 88485479 41 CCTGCCTCTGCAGCCAAGTTCCCGGAAGCTGTCCTGGCTGC CCTGCCTCTGCAGCCAAGTTCCTGGAAGCTGTCCTGGCTGC < 41bp 0.781517000439483 0.539603181239483 0.44530106 0.3363965 prediction 0.483827638399999 Functional Loss - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88485459 chr2:88485461 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_68383 0 0 0 0 1 THNSL2 chr2:88485417 3'AG 88485417 Downstream 45bp
chr10 101606756 101606756 1 + C T UCEC 101606754 + 101606734 101606774 41 CTGGAAGCCTGAGGATGAATCTCGACCCTTTCAACAACTAC CTGGAAGCCTGAGGATGAATCTTGACCCTTTCAACAACTAC < 41bp 0.741912891428363 0.454457243569114 0.04204157 0.0058684945 prediction 0.483825782856726 Functional Loss - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101606754 chr10:101606756 synonymous SNV . 0 23 hm5C_associated_SNPs_68384 0 0 1 0 1 ABCC2 chr10:101606718 3'AG 101606718 Downstream 39bp
chr6 12163572 12163572 1 + A C OV 12163568 + 12163548 12163588 41 AGCTGAGCACAGCCCCCAGACAGCAGCGGGGATGCCTTCTG AGCTGAGCACAGCCCCCAGACAGCCGCGGGGATGCCTTCTG < 41bp 0.741900932922768 0.347558419526057 0.13911796 0.109178245 prediction 0.483801865845535 Functional Loss - HIVEP1 ENSG00000095951 CDS Human protein_coding chr6:12163568 chr6:12163572 synonymous SNV . 0 25 hm5C_associated_SNPs_68387 0 0 1 0 1 HIVEP1 chr6:12163516 3'AG 12163516 Downstream 57bp
chr19 42406968 42406968 1 + A T HNSC 42406964 + 42406944 42406984 41 GCCGCCCGCGGTGCCGCCGCCTGCAGCTGAAGGACATGATC GCCGCCCGCGGTGCCGCCGCCTGCTGCTGAAGGACATGATC < 41bp 0.741895336314636 0.401163069580012 0.5980587 0.19216368 prediction 0.483790672629272 Functional Loss - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42406964 chr19:42406968 nonsynonymous SNV 0.982 4 25 hm5C_associated_SNPs_68388 0 0 1 0 2 ARHGEF1 chr19:42406934 3'AG 42406934 Downstream 35bp
chr19 42406968 42406968 1 + A T HNSC 42406964 + 42406944 42406984 41 GCCGCCCGCGGTGCCGCCGCCTGCAGCTGAAGGACATGATC GCCGCCCGCGGTGCCGCCGCCTGCTGCTGAAGGACATGATC < 41bp 0.741895336314636 0.401163069580012 0.5980587 0.19216368 prediction 0.483790672629272 Functional Loss - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42406964 chr19:42406968 nonsynonymous SNV 0.982 4 25 hm5C_associated_SNPs_68388 0 0 1 0 2 ARHGEF1 chr19:42407048 5'GT 42407048 Upstream 81bp
chr15 58830707 58830707 1 + C T rs7175412 58830705 + 58830685 58830725 41 TGCCTCTGGTGATGATAATCCACGGGTGGTCGGTAGGAAAT TGCCTCTGGTGATGATAATCCATGGGTGGTCGGTAGGAAAT < 41bp 0.802181511404726 0.560286526592176 0.46238115 0.32774392 prediction 0.4837899696251 Functional Loss - LIPC ENSG00000166035 CDS Human protein_coding chr15:58830705 chr15:58830707 synonymous SNV . 0 23 hm5C_associated_SNPs_68389 1 0 1 0 1 LIPC chr15:58830716 5'GT 58830716 Upstream 10bp
chr12 109870742 109870742 1 + G A rs144822082 109870739 + 109870719 109870759 41 CAGACACCTGGCCGCACTGGCACGGGCCTCCAGCAGAGGGC CAGACACCTGGCCGCACTGGCACAGGCCTCCAGCAGAGGGC < 41bp 0.741892910788282 0.492063268086086 0.6482113 0.15488061 prediction 0.483785821576564 Functional Loss - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109870739 chr12:109870742 nonsynonymous SNV 0.709 4 24 hm5C_associated_SNPs_68391 0 0 0 0 2 MYO1H chr12:109870702 3'AG 109870702 Downstream 41bp
chr12 109870742 109870742 1 + G A rs144822082 109870739 + 109870719 109870759 41 CAGACACCTGGCCGCACTGGCACGGGCCTCCAGCAGAGGGC CAGACACCTGGCCGCACTGGCACAGGCCTCCAGCAGAGGGC < 41bp 0.741892910788282 0.492063268086086 0.6482113 0.15488061 prediction 0.483785821576564 Functional Loss - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109870739 chr12:109870742 nonsynonymous SNV 0.709 4 24 hm5C_associated_SNPs_68391 0 0 0 0 2 MYO1H chr12:109870815 5'GT 109870815 Upstream 74bp
chr19 7707702 7707702 1 + C T rs201293382 7707700 + 7707680 7707720 41 TGTGAGAGCAAGAGGCTGACCACGGACAAGGTAGGGGCGGA TGTGAGAGCAAGAGGCTGACCATGGACAAGGTAGGGGCGGA < 41bp 0.753487271570476 0.511602927906884 0.31368512 0.33236977 prediction 0.483768687327184 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7707700 chr19:7707702 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_68393 0 0 1 0 2 STXBP2 chr19:7707652 3'AG 7707652 Downstream 51bp
chr19 7707702 7707702 1 + C T rs201293382 7707700 + 7707680 7707720 41 TGTGAGAGCAAGAGGCTGACCACGGACAAGGTAGGGGCGGA TGTGAGAGCAAGAGGCTGACCATGGACAAGGTAGGGGCGGA < 41bp 0.753487271570476 0.511602927906884 0.31368512 0.33236977 prediction 0.483768687327184 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7707700 chr19:7707702 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_68393 0 0 1 0 2 STXBP2 chr19:7707709 5'GT 7707709 Upstream 8bp
chr22 18064152 18064152 1 + G T COAD 18064149 + 18064129 18064169 41 ACTGCCTGATGAAGACGGCTCGGGCGGAGGGCTTCTTCGGC ACTGCCTGATGAAGACGGCTCGGTCGGAGGGCTTCTTCGGC < 41bp 0.741882700164185 0.327413314645345 0.8853085 0.18830097 prediction 0.483765400328369 Functional Loss - LOC101929372;SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18064149 chr22:18064152 nonsynonymous SNV 0.459 0 24 hm5C_associated_SNPs_68394 0 0 0 0 2 LOC101929372;SLC25A18 chr22:18064124 3'AG 18064124 Downstream 29bp
chr22 18064152 18064152 1 + G T COAD 18064149 + 18064129 18064169 41 ACTGCCTGATGAAGACGGCTCGGGCGGAGGGCTTCTTCGGC ACTGCCTGATGAAGACGGCTCGGTCGGAGGGCTTCTTCGGC < 41bp 0.741882700164185 0.327413314645345 0.8853085 0.18830097 prediction 0.483765400328369 Functional Loss - LOC101929372;SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18064149 chr22:18064152 nonsynonymous SNV 0.459 0 24 hm5C_associated_SNPs_68394 0 0 0 0 2 LOC101929372;SLC25A18 chr22:18064179 5'GT 18064179 Upstream 28bp
chr19 1054225 1054225 1 + G A LUAD 1054222 + 1054202 1054242 41 CCCAGAGACTGACCAGGGCTCTGGGCCAGACGCCGTGGGCC CCCAGAGACTGACCAGGGCTCTGAGCCAGACGCCGTGGGCC < 41bp 0.746577976298055 0.50470323903003 0.54814947 0.27699506 prediction 0.48374947453605 Functional Loss - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1054222 chr19:1054225 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_68397 0 0 1 0 1 ABCA7 chr19:1054192 3'AG 1054192 Downstream 34bp
chr1 34667832 34667832 1 + C T UCEC 34667830 + 34667810 34667850 41 TATCCACCTCCACCAGTGTTCACGAATCACTCTACCTTCTT TATCCACCTCCACCAGTGTTCATGAATCACTCTACCTTCTT < 41bp 0.820697768919913 0.578824082382733 0.019569695 0.08145395 prediction 0.48374737307436 Functional Loss - C1orf94 ENSG00000142698 CDS Human protein_coding chr1:34667830 chr1:34667832 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_68399 0 0 0 0 1 C1orf94 chr1:34667860 5'GT 34667860 Upstream 29bp
chr19 50962428 50962428 1 + G A rs200634321 50962425 + 50962405 50962445 41 GGGCCCCGCTGGACACCTCCCGCGTGCACGTGCGGACCAGC GGGCCCCGCTGGACACCTCCCGCATGCACGTGCGGACCAGC < 41bp 0.747064213606217 0.505193241580857 0.25531304 0.12256989 prediction 0.48374194405072 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50962425 chr19:50962428 nonsynonymous SNV 0.690 2 24 hm5C_associated_SNPs_68400 0 0 0 0 1 MYBPC2 chr19:50962368 3'AG 50962368 Downstream 61bp
chr6 44274727 44274727 1 - G A UCEC 44274729 - 44274709 44274749 41 CTGCGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGC CTGCGTCGAGCTGTGCGTTTCTTCATGGAGATCTTAAAGGC < 41bp 0.86102466825007 0.619156402925631 0.9747491 0.10221583 prediction 0.483736530648879 Functional Loss - AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human protein_coding chr6:44274729 chr6:44274727 stopgain 0.135 2 23 hm5C_associated_SNPs_68402 0 0 1 0 2 AARS2 chr6:44274660 5'GT 44274660 Upstream 68bp
chr6 44274727 44274727 1 - G A UCEC 44274729 - 44274709 44274749 41 CTGCGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGC CTGCGTCGAGCTGTGCGTTTCTTCATGGAGATCTTAAAGGC < 41bp 0.86102466825007 0.619156402925631 0.9747491 0.10221583 prediction 0.483736530648879 Functional Loss - AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human other chr6:44274729 chr6:44274727 stopgain 0.135 2 23 hm5C_associated_SNPs_68402 0 0 1 0 2 AARS2 chr6:44274768 3'AG 44274768 Downstream 42bp
chr6 13182810 13182810 1 + T C LIHC 13182809 + 13182789 13182829 41 GAAAATGGGCAGTCCCTGAGCTCCAGCCAGCTGTCTCTGCC GAAAATGGGCAGTCCCTGAGCCCCAGCCAGCTGTCTCTGCC < 41bp 0.741861038469602 0.491512711490057 0.7019196 0.22901574 prediction 0.483722076939204 Functional Loss - PHACTR1 ENSG00000112137 CDS Human protein_coding chr6:13182809 chr6:13182810 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_68404 0 0 0 0 1 PHACTR1 chr6:13182751 3'AG 13182751 Downstream 60bp
chr7 134260625 134260625 1 + C T BRCA 134260623 + 134260603 134260643 41 AAACTGATCCAGTACTGCCACTCCAAGGGCATCACCGTTAC AAACTGATCCAGTACTGCCACTTCAAGGGCATCACCGTTAC < 41bp 0.81929674161702 0.577439411970337 0.96254367 0.3346712 prediction 0.483714659293367 Functional Loss - AKR1B15 ENSG00000227471 CDS Human protein_coding chr7:134260623 chr7:134260625 nonsynonymous SNV 0.991 3 23 hm5C_associated_SNPs_68405 0 0 0 0 2 AKR1B15 chr7:134260573 3'AG 134260573 Downstream 53bp
chr7 134260625 134260625 1 + C T BRCA 134260623 + 134260603 134260643 41 AAACTGATCCAGTACTGCCACTCCAAGGGCATCACCGTTAC AAACTGATCCAGTACTGCCACTTCAAGGGCATCACCGTTAC < 41bp 0.81929674161702 0.577439411970337 0.96254367 0.3346712 prediction 0.483714659293367 Functional Loss - AKR1B15 ENSG00000227471 CDS Human protein_coding chr7:134260623 chr7:134260625 nonsynonymous SNV 0.991 3 23 hm5C_associated_SNPs_68405 0 0 0 0 2 AKR1B15 chr7:134260679 5'GT 134260679 Upstream 55bp
chr4 74736256 74736256 1 + A C rs373235955 74736255 + 74736235 74736275 41 CAGTGACAAATCCAACTGACCAGAAGGGAGGAGGAAGCTCA CAGTGACAAATCCAACTGACCCGAAGGGAGGAGGAAGCTCA < 41bp 0.759539077575224 0.517682943876988 0.14720446 0.07202357 prediction 0.483712267396472 Functional Loss - CXCL1 ENSG00000163739 UTR3 Human protein_coding chr4:74736255 chr4:74736256 . . 0 22 hm5C_associated_SNPs_68406 0 0 0 0 1 CXCL1 chr4:74736238 3'AG 74736238 Downstream 19bp
chr15 39874921 39874921 1 + A T SKCM 39874917 + 39874897 39874937 41 CTGGCCAGCATCGCCAGACTCCGCATCGCAAAGGGGGGCGT CTGGCCAGCATCGCCAGACTCCGCTTCGCAAAGGGGGGCGT < 41bp 0.741853251082492 0.394573148799436 0.18838683 0.1799911 prediction 0.483706502164984 Functional Loss - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39874917 chr15:39874921 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_68409 0 0 1 0 1 THBS1 chr15:39874953 5'GT 39874953 Upstream 33bp
chr21 45706946 45706946 1 + G A SKCM 45706943 + 45706923 45706963 41 CCGCCACCCAGACTCCCCACCAAGAGGAAGGCCTCAGAAGA CCGCCACCCAGACTCCCCACCAAAAGGAAGGCCTCAGAAGA < 41bp 0.761415751401102 0.519568803862269 0.65888846 0.12871918 prediction 0.483693895077666 Functional Loss - AIRE ENSG00000160224 CDS Human protein_coding chr21:45706943 chr21:45706946 synonymous SNV . 0 24 hm5C_associated_SNPs_68410 0 0 0 0 2 AIRE chr21:45706861 3'AG 45706861 Downstream 86bp
chr21 45706946 45706946 1 + G A SKCM 45706943 + 45706923 45706963 41 CCGCCACCCAGACTCCCCACCAAGAGGAAGGCCTCAGAAGA CCGCCACCCAGACTCCCCACCAAAAGGAAGGCCTCAGAAGA < 41bp 0.761415751401102 0.519568803862269 0.65888846 0.12871918 prediction 0.483693895077666 Functional Loss - AIRE ENSG00000160224 CDS Human protein_coding chr21:45706943 chr21:45706946 synonymous SNV . 0 24 hm5C_associated_SNPs_68410 0 0 0 0 2 AIRE chr21:45707016 5'GT 45707016 Upstream 71bp
chr13 96086182 96086182 1 + C T LUAD 96086180 + 96086160 96086200 41 TCCAATGAGTGGAAAGTGACCACGCGAGCCTCCTCGGTGAT TCCAATGAGTGGAAAGTGACCATGCGAGCCTCCTCGGTGAT < 41bp 0.759069662003805 0.517224105332675 0.67715985 0.49108204 prediction 0.483691113342259 Functional Loss - CLDN10 ENSG00000134873 CDS Human protein_coding chr13:96086180 chr13:96086182 nonsynonymous SNV 0.860 3 23 hm5C_associated_SNPs_68411 0 0 0 0 1 CLDN10 chr13:96086244 5'GT 96086244 Upstream 63bp
chrX 153543566 153543566 1 + G C rs782149533 153543562 + 153543542 153543582 41 GCGGTCTGGCTCTGGCTAAGCTGGGCTACGCGAACAACAGA GCGGTCTGGCTCTGGCTAAGCTGGCCTACGCGAACAACAGA < 41bp 0.8600223026745 0.618179718259218 0.8323521 0.6492388 prediction 0.483685168830563 Functional Loss - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153543562 chrX:153543566 nonsynonymous SNV 0.131 4 25 hm5C_associated_SNPs_68413 0 0 0 0 1 TKTL1 chrX:153543523 3'AG 153543523 Downstream 44bp
chr7 100799995 100799995 1 + C T LUSC 100799993 + 100799973 100800013 41 GCTCATGCAGGTTGTCCTGGCTCGAAAGCCCAAGATGTGCA GCTCATGCAGGTTGTCCTGGCTTGAAAGCCCAAGATGTGCA < 41bp 0.841671243033422 0.59983009122713 0.37557054 0.18856227 prediction 0.483682303612583 Functional Loss - AP1S1 ENSG00000106367 CDS Human protein_coding chr7:100799993 chr7:100799995 stopgain 0.998 1 23 hm5C_associated_SNPs_68414 0 0 1 0 1 AP1S1 chr7:100800053 5'GT 100800053 Upstream 59bp
chr19 19330057 19330057 1 + G T LUAD 19330054 + 19330034 19330074 41 GCCACTGAGGGCCAGTGACTCTGGGCTGTACCGCTGCCAGG GCCACTGAGGGCCAGTGACTCTGTGCTGTACCGCTGCCAGG < 41bp 0.925728662659827 0.683889256582905 0.91248846 0.35512835 prediction 0.483678812153844 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19330054 chr19:19330057 nonsynonymous SNV 0.461 3 24 hm5C_associated_SNPs_68415 0 0 0 0 1 NCAN chr19:19330125 5'GT 19330125 Upstream 69bp
chr19 54656669 54656669 1 + C T UCEC 54656667 + 54656647 54656687 41 CACCAGATGCCACCCCCACACTCGGACACTGTGGAATTCTA CACCAGATGCCACCCCCACACTTGGACACTGTGGAATTCTA < 41bp 0.741835582919127 0.457650281362348 0.099743634 0.16329738 prediction 0.483671165838254 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54656667 chr19:54656669 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_68416 0 0 1 0 3 CNOT3 chr19:54656604 3'AG 54656604 Downstream 66bp
chr19 54656669 54656669 1 + C T UCEC 54656667 + 54656647 54656687 41 CACCAGATGCCACCCCCACACTCGGACACTGTGGAATTCTA CACCAGATGCCACCCCCACACTTGGACACTGTGGAATTCTA < 41bp 0.741835582919127 0.457650281362348 0.099743634 0.16329738 prediction 0.483671165838254 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54656667 chr19:54656669 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_68416 0 0 1 0 3 CNOT3 chr19:54656608 3'AG 54656608 Downstream 62bp
chr19 54656669 54656669 1 + C T UCEC 54656667 + 54656647 54656687 41 CACCAGATGCCACCCCCACACTCGGACACTGTGGAATTCTA CACCAGATGCCACCCCCACACTTGGACACTGTGGAATTCTA < 41bp 0.741835582919127 0.457650281362348 0.099743634 0.16329738 prediction 0.483671165838254 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54656667 chr19:54656669 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_68416 0 0 1 0 3 CNOT3 chr19:54656736 5'GT 54656736 Upstream 68bp
chr12 113873266 113873266 1 + G T LGG 113873264 + 113873244 113873284 41 GCCTGCTGGAGGTGGGCTGGCAGCATGTACCCATCATTGCC GCCTGCTGGAGGTGGGCTGGCATCATGTACCCATCATTGCC < 41bp 0.899471363593089 0.657644019501698 0.30389977 0.40201908 prediction 0.483654688182783 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113873264 chr12:113873266 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_68417 0 0 1 0 1 SDSL chr12:113873361 5'GT 113873361 Upstream 96bp
chr19 18702982 18702982 1 + G T SARC 18702980 + 18702960 18703000 41 CCTTAGGTTTGATGCGGAATCTGCCGAGTGATGGCGGCTCC CCTTAGGTTTGATGCGGAATCTTCCGAGTGATGGCGGCTCC < 41bp 0.809768342420949 0.56794923433989 0.80433095 0.7707279 prediction 0.483638216162117 Functional Loss - C19orf60 ENSG00000006015 CDS Human protein_coding chr19:18702980 chr19:18702982 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_68421 0 0 1 0 1 C19orf60 chr19:18702918 3'AG 18702918 Downstream 65bp
chr11 60636705 60636705 1 + C T UCEC 60636703 + 60636683 60636723 41 CCGCAGGAGCCTGCAGTCTTCTCGGCCGATTACAGAGGCTG CCGCAGGAGCCTGCAGTCTTCTTGGCCGATTACAGAGGCTG < 41bp 0.799215374301578 0.557400185876274 0.34629136 0.37105706 prediction 0.483630376850609 Functional Loss - ZP1 ENSG00000149506 CDS Human protein_coding chr11:60636703 chr11:60636705 nonsynonymous SNV 0.421 2 23 hm5C_associated_SNPs_68422 0 0 0 0 2 ZP1 chr11:60636618 3'AG 60636618 Downstream 88bp
chr11 60636705 60636705 1 + C T UCEC 60636703 + 60636683 60636723 41 CCGCAGGAGCCTGCAGTCTTCTCGGCCGATTACAGAGGCTG CCGCAGGAGCCTGCAGTCTTCTTGGCCGATTACAGAGGCTG < 41bp 0.799215374301578 0.557400185876274 0.34629136 0.37105706 prediction 0.483630376850609 Functional Loss - ZP1 ENSG00000149506 CDS Human protein_coding chr11:60636703 chr11:60636705 nonsynonymous SNV 0.421 2 23 hm5C_associated_SNPs_68422 0 0 0 0 2 ZP1 chr11:60636739 5'GT 60636739 Upstream 35bp
chr5 145862252 145862252 1 + C T UCEC 145862250 + 145862230 145862270 41 GGCCATTGTCCCTCTGGAGGCTCGAATGAAGCAGTTCAAGG GGCCATTGTCCCTCTGGAGGCTTGAATGAAGCAGTTCAAGG < 41bp 0.845254421478792 0.603444621005459 0.3519494 0.22099248 prediction 0.483619600946667 Functional Loss - TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145862250 chr5:145862252 stopgain 0.999 1 23 hm5C_associated_SNPs_68425 0 0 1 0 2 TCERG1 chr5:145862155 3'AG 145862155 Downstream 98bp
chr5 145862252 145862252 1 + C T UCEC 145862250 + 145862230 145862270 41 GGCCATTGTCCCTCTGGAGGCTCGAATGAAGCAGTTCAAGG GGCCATTGTCCCTCTGGAGGCTTGAATGAAGCAGTTCAAGG < 41bp 0.845254421478792 0.603444621005459 0.3519494 0.22099248 prediction 0.483619600946667 Functional Loss - TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145862250 chr5:145862252 stopgain 0.999 1 23 hm5C_associated_SNPs_68425 0 0 1 0 2 TCERG1 chr5:145862290 5'GT 145862290 Upstream 39bp
chr17 38508701 38508701 1 + C T SKCM 38508699 + 38508679 38508719 41 GCCAAGCAGCTGCCCGGCTTCACCACCCTCACCATCGCCGA GCCAAGCAGCTGCCCGGCTTCATCACCCTCACCATCGCCGA < 41bp 0.835646096789393 0.593837501145904 0.33084446 0.1999959 prediction 0.483617191286977 Functional Loss - RARA ENSG00000131759 CDS Human protein_coding chr17:38508699 chr17:38508701 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_68426 0 0 1 0 1 RARA chr17:38508759 5'GT 38508759 Upstream 59bp
chr15 89386657 89386657 1 + G A PRAD 89386654 + 89386634 89386674 41 CAGCCAATGAGTGCCGGCGGCTGGGTGCCCGGCTGGCCACC CAGCCAATGAGTGCCGGCGGCTGAGTGCCCGGCTGGCCACC < 41bp 0.746321215324123 0.504513203801296 0.92053825 0.8063704 prediction 0.483616023045654 Functional Loss - ACAN ENSG00000157766 CDS Human protein_coding chr15:89386654 chr15:89386657 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_68427 0 0 0 0 1 ACAN chr15:89386586 3'AG 89386586 Downstream 72bp
chr18 905462 905462 1 + A C LUSC 905461 + 905441 905481 41 GCACAGCAGCGTCTACAGCTCACCTGCCGCCGCCGGACTCC GCACAGCAGCGTCTACAGCTCCCCTGCCGCCGCCGGACTCC < 41bp 0.741802065987389 0.493494869666261 0.05652243 0.045679867 prediction 0.483604131974778 Functional Loss - ADCYAP1 ENSG00000141433;ENSG00000265179 exonic;splicing Human processed_transcript chr18:905461 chr18:905462 synonymous SNV . 0 22 hm5C_associated_SNPs_68430 0 0 0 0 2 ADCYAP1 chr18:905387 3'AG 905387 Downstream 76bp
chr18 905462 905462 1 + A C LUSC 905461 + 905441 905481 41 GCACAGCAGCGTCTACAGCTCACCTGCCGCCGCCGGACTCC GCACAGCAGCGTCTACAGCTCCCCTGCCGCCGCCGGACTCC < 41bp 0.741802065987389 0.493494869666261 0.05652243 0.045679867 prediction 0.483604131974778 Functional Loss - ADCYAP1 ENSG00000141433;ENSG00000265179 exonic;splicing Human protein_coding chr18:905461 chr18:905462 synonymous SNV . 0 22 hm5C_associated_SNPs_68430 0 0 0 0 2 ADCYAP1 chr18:905497 5'GT 905497 Upstream 36bp
chr18 905463 905463 1 + C T UCEC 905461 + 905441 905481 41 GCACAGCAGCGTCTACAGCTCACCTGCCGCCGCCGGACTCC GCACAGCAGCGTCTACAGCTCATCTGCCGCCGCCGGACTCC < 41bp 0.741802065987389 0.494916485933386 0.05652243 0.056093305 prediction 0.483604131974778 Functional Loss - ADCYAP1 ENSG00000141433;ENSG00000265179 exonic;splicing Human processed_transcript chr18:905461 chr18:905463 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_68431 0 0 0 0 2 ADCYAP1 chr18:905387 3'AG 905387 Downstream 77bp
chr18 905463 905463 1 + C T UCEC 905461 + 905441 905481 41 GCACAGCAGCGTCTACAGCTCACCTGCCGCCGCCGGACTCC GCACAGCAGCGTCTACAGCTCATCTGCCGCCGCCGGACTCC < 41bp 0.741802065987389 0.494916485933386 0.05652243 0.056093305 prediction 0.483604131974778 Functional Loss - ADCYAP1 ENSG00000141433;ENSG00000265179 exonic;splicing Human protein_coding chr18:905461 chr18:905463 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_68431 0 0 0 0 2 ADCYAP1 chr18:905497 5'GT 905497 Upstream 35bp
chr16 22926289 22926289 1 + G T UCEC 22926286 + 22926266 22926306 41 AGCCTGATGCCCAGGACCCTCGAGAGCCAGATCACGCTGGA AGCCTGATGCCCAGGACCCTCGATAGCCAGATCACGCTGGA < 41bp 0.921072583067326 0.679278589615078 0.60984117 0.31311 prediction 0.483587986904495 Functional Loss - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926286 chr16:22926289 nonsynonymous SNV 0.933 0 24 hm5C_associated_SNPs_68433 0 0 0 3 1 HS3ST2 chr16:22926265 3'AG 22926265 Downstream 25bp
chr19 17877516 17877516 1 + C T ESCA 17877514 + 17877494 17877534 41 TGGGAGGTCTTCCGCGTCTCCTCGGACAAGCTGGCGCTGTG TGGGAGGTCTTCCGCGTCTCCTTGGACAAGCTGGCGCTGTG < 41bp 0.821209480301314 0.579415908606764 0.65026176 0.55229264 prediction 0.483587143389099 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17877514 chr19:17877516 nonsynonymous SNV 0.856 1 23 hm5C_associated_SNPs_68434 0 0 0 0 1 FCHO1 chr19:17877478 3'AG 17877478 Downstream 39bp
chr19 49898383 49898383 1 + G T LUSC 49898380 + 49898360 49898400 41 CAGGCACTGTGGCTGTGGCCCAGGTGCTGGCCTACCTGGAG CAGGCACTGTGGCTGTGGCCCAGTTGCTGGCCTACCTGGAG < 41bp 0.741791941366823 0.332504564980192 0.7615409 0.13898411 prediction 0.483583882733645 Functional Loss - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49898380 chr19:49898383 nonsynonymous SNV 0.451 0 24 hm5C_associated_SNPs_68435 0 0 0 0 1 CCDC155 chr19:49898363 3'AG 49898363 Downstream 21bp
chr19 49898382 49898382 1 + G T LUSC 49898380 + 49898360 49898400 41 CAGGCACTGTGGCTGTGGCCCAGGTGCTGGCCTACCTGGAG CAGGCACTGTGGCTGTGGCCCATGTGCTGGCCTACCTGGAG < 41bp 0.741791941366823 0.37578198602419 0.7615409 0.22154626 prediction 0.483583882733645 Functional Loss - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49898380 chr19:49898382 nonsynonymous SNV 0.422 0 23 hm5C_associated_SNPs_68436 0 0 0 0 1 CCDC155 chr19:49898363 3'AG 49898363 Downstream 20bp
chr14 24108419 24108419 1 + C T PAAD 24108417 + 24108397 24108437 41 TGCCATCGCCCGACGTCTGGCCCGGGACGGGGCCCACGTGG TGCCATCGCCCGACGTCTGGCCTGGGACGGGGCCCACGTGG < 41bp 0.782114513042291 0.540325775208307 0.0109981 0.01583451 prediction 0.483577475667968 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24108417 chr14:24108419 nonsynonymous SNV 0.025 2 23 hm5C_associated_SNPs_68438 0 0 1 0 1 DHRS2 chr14:24108388 3'AG 24108388 Downstream 32bp
chr8 36788639 36788639 1 + C T COAD 36788637 + 36788617 36788657 41 AGCTGGGGCTTCTGTCCTTACACGAAACCATTTTATCAGAC AGCTGGGGCTTCTGTCCTTACATGAAACCATTTTATCAGAC < 41bp 0.81587913292006 0.574092420322953 0.33727297 0.3678611 prediction 0.483573425194213 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36788637 chr8:36788639 synonymous SNV . 0 23 hm5C_associated_SNPs_68440 0 0 0 0 1 KCNU1 chr8:36788663 5'GT 36788663 Upstream 25bp
chrX 3019199 3019199 1 + G T LUAD 3019196 + 3019176 3019216 41 TTGTCTACTTTACATCAGATCACGGAGGGCATTTGGAAGCT TTGTCTACTTTACATCAGATCACTGAGGGCATTTGGAAGCT < 41bp 0.741783255877752 0.334068969614975 0.41471833 0.09184688 prediction 0.483566511755504 Functional Loss - ARSF ENSG00000062096 CDS Human protein_coding chrX:3019196 chrX:3019199 stopgain 0.865 0 24 hm5C_associated_SNPs_68442 0 0 0 0 2 ARSF chrX:3019128 3'AG 3019128 Downstream 72bp
chrX 3019199 3019199 1 + G T LUAD 3019196 + 3019176 3019216 41 TTGTCTACTTTACATCAGATCACGGAGGGCATTTGGAAGCT TTGTCTACTTTACATCAGATCACTGAGGGCATTTGGAAGCT < 41bp 0.741783255877752 0.334068969614975 0.41471833 0.09184688 prediction 0.483566511755504 Functional Loss - ARSF ENSG00000062096 CDS Human protein_coding chrX:3019196 chrX:3019199 stopgain 0.865 0 24 hm5C_associated_SNPs_68442 0 0 0 0 2 ARSF chrX:3019262 5'GT 3019262 Upstream 64bp
chr15 72103949 72103949 1 + G T UCEC 72103947 + 72103927 72103967 41 GTACGGCGGAGGCTCATCTACAGGTGAGTGCGGTGGGCCCT GTACGGCGGAGGCTCATCTACATGTGAGTGCGGTGGGCCCT < 41bp 0.891230000319905 0.649463243505699 0.8971838 0.56666315 prediction 0.483533513628412 Functional Loss - NR2E3 ENSG00000031544 ncRNA_exonic Human other chr15:72103947 chr15:72103949 . 0.966 2 23 hm5C_associated_SNPs_68447 0 0 0 0 1 NR2E3 chr15:72103949 5'GT 72103949 Upstream 1bp
chr3 37458917 37458917 1 + G T LUAD 37458915 + 37458895 37458935 41 CAGAGGAAGGCGGGCTAATGCAGAGCAGATGGGCCTGCAGG CAGAGGAAGGCGGGCTAATGCATAGCAGATGGGCCTGCAGG < 41bp 0.891387853808309 0.649625591451119 0.8930284 0.31697488 prediction 0.483524524714379 Functional Loss - C3orf35 ENSG00000198590 CDS Human protein_coding chr3:37458915 chr3:37458917 stopgain . 0 23 hm5C_associated_SNPs_68449 0 0 0 0 1 C3orf35 chr3:37458983 5'GT 37458983 Upstream 67bp
chr8 101252666 101252666 1 + A C STAD 101252665 + 101252645 101252685 41 GGAGGAGCCTGGAAGACCTGCAGGGGAGGTCTCCATGGGAT GGAGGAGCCTGGAAGACCTGCCGGGGAGGTCTCCATGGGAT < 41bp 0.79529148219014 0.553531076246524 0.91079473 0.39947248 prediction 0.483520811887233 Functional Loss - SPAG1 ENSG00000104450 CDS Human protein_coding chr8:101252665 chr8:101252666 synonymous SNV . 0 22 hm5C_associated_SNPs_68452 0 0 0 0 1 SPAG1 chr8:101252631 3'AG 101252631 Downstream 36bp
chr17 46000629 46000629 1 + C T UCEC 46000627 + 46000607 46000647 41 CAGGGCGTGCCTGTCACCATCACCAACACAGGCGGTGAGGA CAGGGCGTGCCTGTCACCATCATCAACACAGGCGGTGAGGA < 41bp 0.741757219320781 0.454316332670197 0.04371792 0.048215985 prediction 0.483514438641562 Functional Loss - SP2 ENSG00000167182 CDS Human protein_coding chr17:46000627 chr17:46000629 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_68455 0 0 0 0 1 SP2 chr17:46000640 5'GT 46000640 Upstream 12bp
chr15 90617455 90617455 1 + C T THCA 90617453 + 90617433 90617473 41 ACTGCTCCAGCAAGTTTAATCTCAAGGGCAACCTGAGCCGG ACTGCTCCAGCAAGTTTAATCTTAAGGGCAACCTGAGCCGG < 41bp 0.8340983436791 0.592342335238554 0.05964905 0.08121252 prediction 0.483512016881092 Functional Loss - ZNF710 ENSG00000140548 CDS Human protein_coding chr15:90617453 chr15:90617455 synonymous SNV . 0 23 hm5C_associated_SNPs_68457 0 0 0 0 1 ZNF710 chr15:90617522 5'GT 90617522 Upstream 68bp
chr5 161113240 161113240 1 + G T LUAD 161113237 + 161113217 161113257 41 ATTGACTGTCTACACACAGGCTAGAAAATGCCCTAGGGAAA ATTGACTGTCTACACACAGGCTATAAAATGCCCTAGGGAAA < 41bp 0.741750034078427 0.369624053452411 0.10213864 0.14411697 prediction 0.483500068156853 Functional Loss - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161113237 chr5:161113240 stopgain 0.993 0 24 hm5C_associated_SNPs_68458 0 0 0 0 1 GABRA6 chr5:161113236 3'AG 161113236 Downstream 5bp
chr16 1816752 1816752 1 + T C LIHC 1816751 + 1816731 1816771 41 GTGCACTCGGCTGTGGCCAACTGGAAGAAGTGCCTGCACTC GTGCACTCGGCTGTGGCCAACCGGAAGAAGTGCCTGCACTC < 41bp 0.768949129259235 0.527199994390381 0.945669 0.9503753 prediction 0.483498269737707 Functional Loss - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1816751 chr16:1816752 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_68459 0 0 1 0 2 MAPK8IP3 chr16:1816724 3'AG 1816724 Downstream 29bp
chr16 1816752 1816752 1 + T C LIHC 1816751 + 1816731 1816771 41 GTGCACTCGGCTGTGGCCAACTGGAAGAAGTGCCTGCACTC GTGCACTCGGCTGTGGCCAACCGGAAGAAGTGCCTGCACTC < 41bp 0.768949129259235 0.527199994390381 0.945669 0.9503753 prediction 0.483498269737707 Functional Loss - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1816751 chr16:1816752 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_68459 0 0 1 0 2 MAPK8IP3 chr16:1816804 5'GT 1816804 Upstream 53bp
chr17 26851022 26851022 1 + C T LUAD 26851020 + 26851000 26851040 41 CCCCCGCCGCAGTCTGACGTCACGCTGCCGGGCCCCACCAG CCCCCGCCGCAGTCTGACGTCATGCTGCCGGGCCCCACCAG < 41bp 0.774771932952957 0.53302368762763 0.1507839 0.2000106 prediction 0.483496490650654 Functional Loss - FOXN1 ENSG00000109101 CDS Human protein_coding chr17:26851020 chr17:26851022 nonsynonymous SNV 0.656 1 23 hm5C_associated_SNPs_68460 0 0 0 0 1 FOXN1 chr17:26850974 3'AG 26850974 Downstream 49bp
chr20 31644432 31644432 1 + C T CESC 31644430 + 31644410 31644450 41 GTGAACCGGGGCCTCTTGGGCTCAGGAGGGCTGCTTGGAGG GTGAACCGGGGCCTCTTGGGCTTAGGAGGGCTGCTTGGAGG < 41bp 0.790142574664607 0.548396003311876 0.34820414 0.3075214 prediction 0.483493142705462 Functional Loss - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31644430 chr20:31644432 nonsynonymous SNV 0.740 0 23 hm5C_associated_SNPs_68461 0 0 0 0 2 BPIFB3 chr20:31644348 3'AG 31644348 Downstream 85bp
chr20 31644432 31644432 1 + C T CESC 31644430 + 31644410 31644450 41 GTGAACCGGGGCCTCTTGGGCTCAGGAGGGCTGCTTGGAGG GTGAACCGGGGCCTCTTGGGCTTAGGAGGGCTGCTTGGAGG < 41bp 0.790142574664607 0.548396003311876 0.34820414 0.3075214 prediction 0.483493142705462 Functional Loss - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31644430 chr20:31644432 nonsynonymous SNV 0.740 0 23 hm5C_associated_SNPs_68461 0 0 0 0 2 BPIFB3 chr20:31644504 5'GT 31644504 Upstream 73bp
chr19 48254313 48254313 1 + G A UCEC 48254310 + 48254290 48254330 41 CTTCTGCAACAAGGGCCAAGCCCGGGCCCCAGGACACCGTA CTTCTGCAACAAGGGCCAAGCCCAGGCCCCAGGACACCGTA < 41bp 0.750878448442269 0.509132736736315 0.6574669 0.25620857 prediction 0.483491423411908 Functional Loss - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48254310 chr19:48254313 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_68462 0 0 1 0 1 NOP53 chr19:48254364 5'GT 48254364 Upstream 52bp
chr1 53393114 53393114 1 + G C UCEC 53393113 + 53393093 53393133 41 GCGACCCTGCGCCGGGTGTTCGTGGTGGGGGTTGGCATGAC GCGACCCTGCGCCGGGTGTTCCTGGTGGGGGTTGGCATGAC < 41bp 0.817586346249352 0.575845820563099 0.896006 0.6947949 prediction 0.483481051372507 Functional Loss - SCP2 ENSG00000116171 CDS Human protein_coding chr1:53393113 chr1:53393114 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_68464 0 0 1 0 1 SCP2 chr1:53393137 5'GT 53393137 Upstream 24bp
chr9 136405805 136405805 1 + C T UCEC 136405803 + 136405783 136405823 41 GGCAGCTCATGGTCCCCGCCCGCGACGGCACATCCTGCAAG GGCAGCTCATGGTCCCCGCCCGTGACGGCACATCCTGCAAG < 41bp 0.81637022066264 0.574638190945494 0.24327973 0.16182533 prediction 0.483464059434291 Functional Loss - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136405803 chr9:136405805 synonymous SNV . 0 23 hm5C_associated_SNPs_68468 0 0 0 0 2 ADAMTSL2 chr9:136405720 3'AG 136405720 Downstream 86bp
chr9 136405805 136405805 1 + C T UCEC 136405803 + 136405783 136405823 41 GGCAGCTCATGGTCCCCGCCCGCGACGGCACATCCTGCAAG GGCAGCTCATGGTCCCCGCCCGTGACGGCACATCCTGCAAG < 41bp 0.81637022066264 0.574638190945494 0.24327973 0.16182533 prediction 0.483464059434291 Functional Loss - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136405803 chr9:136405805 synonymous SNV . 0 23 hm5C_associated_SNPs_68468 0 0 0 0 2 ADAMTSL2 chr9:136405865 5'GT 136405865 Upstream 61bp
chr20 25193907 25193907 1 + G T THCA 25193905 + 25193885 25193925 41 TACCACGTTCACAGAGCGCTCAGGGAATCCGGGAACTACTG TACCACGTTCACAGAGCGCTCATGGAATCCGGGAACTACTG < 41bp 0.741724982633233 0.418205295689563 0.9244802 0.83618987 prediction 0.483449965266465 Functional Loss - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25193905 chr20:25193907 nonsynonymous SNV 0.078 1 23 hm5C_associated_SNPs_68473 0 0 1 0 1 ENTPD6 chr20:25193899 3'AG 25193899 Downstream 9bp
chrX 47976491 47976491 1 + G C KIRP 47976487 + 47976467 47976507 41 ATGGGAAAAAGCTGTGCCCGCCGGGAAAAGCAAGTAGCTCT ATGGGAAAAAGCTGTGCCCGCCGGCAAAAGCAAGTAGCTCT < 41bp 0.741722930859279 0.440773611452076 0.7472243 0.41229284 prediction 0.483445861718558 Functional Loss - SSX6 ENSG00000171483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:47976487 chrX:47976491 . . 0 25 hm5C_associated_SNPs_68474 0 0 0 0 2 SSX6 chrX:47976394 3'AG 47976394 Downstream 98bp
chrX 47976491 47976491 1 + G C KIRP 47976487 + 47976467 47976507 41 ATGGGAAAAAGCTGTGCCCGCCGGGAAAAGCAAGTAGCTCT ATGGGAAAAAGCTGTGCCCGCCGGCAAAAGCAAGTAGCTCT < 41bp 0.741722930859279 0.440773611452076 0.7472243 0.41229284 prediction 0.483445861718558 Functional Loss - SSX6 ENSG00000171483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:47976487 chrX:47976491 . . 0 25 hm5C_associated_SNPs_68474 0 0 0 0 2 SSX6 chrX:47976529 5'GT 47976529 Upstream 39bp
chr17 8159907 8159907 1 + A C UCEC 8159906 + 8159886 8159926 41 CCACACGGCCAAGCCGCTTCCAGCAACAGCAAGGGCTGAGA CCACACGGCCAAGCCGCTTCCCGCAACAGCAAGGGCTGAGA < 41bp 0.741710834699642 0.470329419163084 0.25850457 0.17572233 prediction 0.483421669399284 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8159906 chr17:8159907 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_68480 0 0 1 0 2 PFAS chr17:8159842 3'AG 8159842 Downstream 66bp
chr17 8159907 8159907 1 + A C UCEC 8159906 + 8159886 8159926 41 CCACACGGCCAAGCCGCTTCCAGCAACAGCAAGGGCTGAGA CCACACGGCCAAGCCGCTTCCCGCAACAGCAAGGGCTGAGA < 41bp 0.741710834699642 0.470329419163084 0.25850457 0.17572233 prediction 0.483421669399284 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8159906 chr17:8159907 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_68480 0 0 1 0 2 PFAS chr17:8159966 5'GT 8159966 Upstream 60bp
chr17 80708346 80708346 1 + C T OV 80708344 + 80708324 80708364 41 AGATTGTCCCCGCGTTGCTCCACGGGGATCTCTGGTCGGGA AGATTGTCCCCGCGTTGCTCCATGGGGATCTCTGGTCGGGA < 41bp 0.756933853967013 0.515224602230411 0.92913043 0.89887995 prediction 0.483418503473203 Functional Loss - FN3K ENSG00000167363 CDS Human protein_coding chr17:80708344 chr17:80708346 synonymous SNV . 0 23 hm5C_associated_SNPs_68482 0 0 1 0 1 FN3K chr17:80708293 3'AG 80708293 Downstream 54bp
chr1 44169777 44169777 1 + T C COAD 44169776 + 44169756 44169796 41 GCTTCCCAAGAGAGTCAAATCTAGACTGGTGAGTATTTTCT GCTTCCCAAGAGAGTCAAATCCAGACTGGTGAGTATTTTCT < 41bp 0.741706084170429 0.490821785170032 0.2216315 0.25431293 prediction 0.483412168340857 Functional Loss - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44169776 chr1:44169777 synonymous SNV . 0 22 hm5C_associated_SNPs_68485 0 0 1 0 2 KDM4A chr1:44169691 3'AG 44169691 Downstream 87bp
chr1 44169777 44169777 1 + T C COAD 44169776 + 44169756 44169796 41 GCTTCCCAAGAGAGTCAAATCTAGACTGGTGAGTATTTTCT GCTTCCCAAGAGAGTCAAATCCAGACTGGTGAGTATTTTCT < 41bp 0.741706084170429 0.490821785170032 0.2216315 0.25431293 prediction 0.483412168340857 Functional Loss - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44169776 chr1:44169777 synonymous SNV . 0 22 hm5C_associated_SNPs_68485 0 0 1 0 2 KDM4A chr1:44169783 5'GT 44169783 Upstream 7bp
chr4 139964399 139964399 1 + G A UCEC 139964396 + 139964376 139964416 41 ATGCAGGGCCGTCCTGCACACCCGACCTCCCCGGTTCCAGA ATGCAGGGCCGTCCTGCACACCCAACCTCCCCGGTTCCAGA < 41bp 0.743581349272585 0.501887787382911 0.08094171 0.043183923 prediction 0.483387123779347 Functional Loss - NOCT ENSG00000151014 CDS Human protein_coding chr4:139964396 chr4:139964399 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_68489 0 0 1 0 1 NOCT chr4:139964497 5'GT 139964497 Upstream 99bp
chr19 39965349 39965349 1 + C T CESC 39965347 + 39965327 39965367 41 TGGGACAGACAGGTGTCATCCGCAGTGTCACGGTACGTGGG TGGGACAGACAGGTGTCATCCGTAGTGTCACGGTACGTGGG < 41bp 0.766740806798924 0.525052706889411 0.1563699 0.07182196 prediction 0.483376199819025 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39965347 chr19:39965349 synonymous SNV . 0 23 hm5C_associated_SNPs_68492 0 0 1 0 1 SUPT5H chr19:39965358 5'GT 39965358 Upstream 10bp
chr1 20466009 20466009 1 + G T OV 20466007 + 20465987 20466027 41 GGGTGGAGGGGCCCACGCTTCGGGGCCTCCTGTCCTTCAAG GGGTGGAGGGGCCCACGCTTCGTGGCCTCCTGTCCTTCAAG < 41bp 0.903005032260758 0.661317472602698 0.9288799 0.6208415 prediction 0.483375119316121 Functional Loss - PLA2G2F ENSG00000158786 CDS Human protein_coding chr1:20466007 chr1:20466009 nonsynonymous SNV 0.012 0 23 hm5C_associated_SNPs_68493 0 0 0 0 1 PLA2G2F chr1:20466036 5'GT 20466036 Upstream 28bp
chr22 29695615 29695615 1 + G T LUAD 29695613 + 29695593 29695633 41 TGATCGTGGCAGAGGTGGCCCTGGTGGCATGCGGGGAGGAA TGATCGTGGCAGAGGTGGCCCTTGTGGCATGCGGGGAGGAA < 41bp 0.741684392052015 0.398178120908168 0.5379262 0.24475387 prediction 0.48336878410403 Functional Loss - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695613 chr22:29695615 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_68494 0 0 1 0 1 EWSR1 chr22:29695589 3'AG 29695589 Downstream 27bp
chr1 185191119 185191119 1 + G T UCEC 185191116 + 185191096 185191136 41 TTCCCCAACCCAGCAGGCATCAAGAAATCTGGTCTATCCTA TTCCCCAACCCAGCAGGCATCAATAAATCTGGTCTATCCTA < 41bp 0.741672894634089 0.359993899186217 0.29995388 0.10741699 prediction 0.483345789268177 Functional Loss - SWT1 ENSG00000116668 CDS Human protein_coding chr1:185191116 chr1:185191119 stopgain 0.988 1 24 hm5C_associated_SNPs_68495 0 0 0 0 1 SWT1 chr1:185191168 5'GT 185191168 Upstream 50bp
chr1 196654312 196654312 1 + G T LUAD 196654310 + 196654290 196654330 41 ATGGTTTTTATCCTGCAACCCGGGGAAATACAGCAAAATGC ATGGTTTTTATCCTGCAACCCGTGGAAATACAGCAAAATGC < 41bp 0.741671136960242 0.399671448263835 0.37402123 0.04674408 prediction 0.483342273920485 Functional Loss - CFH ENSG00000000971 CDS Human protein_coding chr1:196654310 chr1:196654312 synonymous SNV . 0 23 hm5C_associated_SNPs_68496 0 0 1 0 1 CFH chr1:196654367 5'GT 196654367 Upstream 56bp
chr1 146758174 146758174 1 + G C BRCA 146758170 + 146758150 146758190 41 GAGGATGCTCTCATTGTGCACTGCGTAGGTACGAGAAGTGG GAGGATGCTCTCATTGTGCACTGCCTAGGTACGAGAAGTGG < 41bp 0.741670177119643 0.459265093403615 0.0539912 0.043141186 prediction 0.483340354239286 Functional Loss - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146758170 chr1:146758174 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_68497 0 0 0 0 1 CHD1L chr1:146758177 5'GT 146758177 Upstream 4bp
chr1 160325672 160325672 1 + C T STAD 160325670 + 160325650 160325690 41 CAGGCCCTGGCAGATGTGGCCACGGTGCTGGGACGTGCTCT CAGGCCCTGGCAGATGTGGCCATGGTGCTGGGACGTGCTCT < 41bp 0.793825605911812 0.552173472213004 0.8813037 0.6563435 prediction 0.483304267397617 Functional Loss - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160325670 chr1:160325672 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_68500 0 0 1 0 2 NCSTN chr1:160325653 3'AG 160325653 Downstream 20bp
chr1 160325672 160325672 1 + C T STAD 160325670 + 160325650 160325690 41 CAGGCCCTGGCAGATGTGGCCACGGTGCTGGGACGTGCTCT CAGGCCCTGGCAGATGTGGCCATGGTGCTGGGACGTGCTCT < 41bp 0.793825605911812 0.552173472213004 0.8813037 0.6563435 prediction 0.483304267397617 Functional Loss - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160325670 chr1:160325672 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_68500 0 0 1 0 2 NCSTN chr1:160325748 5'GT 160325748 Upstream 77bp
chr1 11580853 11580853 1 + G T COAD 11580851 + 11580831 11580871 41 ATACCAACATCCAGGTGCTGCTGGACCTCAAGTACAACCTG ATACCAACATCCAGGTGCTGCTTGACCTCAAGTACAACCTG < 41bp 0.741650881981522 0.389659714526977 0.14410755 0.043508053 prediction 0.483301763963043 Functional Loss - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11580851 chr1:11580853 synonymous SNV . 0 23 hm5C_associated_SNPs_68501 0 0 0 0 1 DISP3 chr1:11580905 5'GT 11580905 Upstream 53bp
chr15 27126077 27126077 1 + G A BLCA 27126074 + 27126054 27126094 41 ACCAGGATCTTGGATGGGCTCTTGGATGGCTACGACAACAG ACCAGGATCTTGGATGGGCTCTTAGATGGCTACGACAACAG < 41bp 0.743349824792733 0.501702994959632 0.12693536 0.06537041 prediction 0.483293659666202 Functional Loss - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27126074 chr15:27126077 synonymous SNV . 0 24 hm5C_associated_SNPs_68505 0 0 0 0 2 GABRA5 chr15:27125993 3'AG 27125993 Downstream 85bp
chr15 27126077 27126077 1 + G A BLCA 27126074 + 27126054 27126094 41 ACCAGGATCTTGGATGGGCTCTTGGATGGCTACGACAACAG ACCAGGATCTTGGATGGGCTCTTAGATGGCTACGACAACAG < 41bp 0.743349824792733 0.501702994959632 0.12693536 0.06537041 prediction 0.483293659666202 Functional Loss - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27126074 chr15:27126077 synonymous SNV . 0 24 hm5C_associated_SNPs_68505 0 0 0 0 2 GABRA5 chr15:27126114 5'GT 27126114 Upstream 38bp
chr3 179460065 179460065 1 + G T LUAD 179460063 + 179460043 179460083 41 GCATTCAGTGCTGTCAGACCCGGAAAGTCCGCTACACGGAG GCATTCAGTGCTGTCAGACCCGTAAAGTCCGCTACACGGAG < 41bp 0.741643475151177 0.396939428625657 0.8715272 0.29143798 prediction 0.483286950302353 Functional Loss - USP13 ENSG00000058056 CDS Human protein_coding chr3:179460063 chr3:179460065 synonymous SNV . 0 23 hm5C_associated_SNPs_68507 0 0 1 0 1 USP13 chr3:179459985 3'AG 179459985 Downstream 81bp
chr5 225597 225597 1 + A C UCEC 225596 + 225576 225616 41 TGGAGGTGGCATTTCTACGACACCGTGAAGGGCTCCGACTG TGGAGGTGGCATTTCTACGACCCCGTGAAGGGCTCCGACTG < 41bp 0.759204119381852 0.517560751073028 0.19351375 0.3133802 prediction 0.483286736617649 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:225596 chr5:225597 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_68508 0 0 1 0 2 SDHA chr5:225534 3'AG 225534 Downstream 64bp
chr5 225597 225597 1 + A C UCEC 225596 + 225576 225616 41 TGGAGGTGGCATTTCTACGACACCGTGAAGGGCTCCGACTG TGGAGGTGGCATTTCTACGACCCCGTGAAGGGCTCCGACTG < 41bp 0.759204119381852 0.517560751073028 0.19351375 0.3133802 prediction 0.483286736617649 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:225596 chr5:225597 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_68508 0 0 1 0 2 SDHA chr5:225677 5'GT 225677 Upstream 81bp
chr4 17812771 17812771 1 + A C rs531531035 17812770 + 17812750 17812790 41 CGCAGCAGCCGCACCAGAACCAGGCGAAGCTGGTGGTGGCG CGCAGCAGCCGCACCAGAACCCGGCGAAGCTGGTGGTGGCG < 41bp 0.763705073274838 0.522064008894462 0.9081794 0.8915524 prediction 0.483282128760752 Functional Loss - NCAPG ENSG00000109805 CDS Human protein_coding chr4:17812770 chr4:17812771 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_68509 0 0 1 0 1 NCAPG chr4:17812811 5'GT 17812811 Upstream 41bp
chr11 2940624 2940624 1 + G T LUAD 2940622 + 2940602 2940642 41 GGCTACCTCATGTCCTTCTTCGGGCTCCTCCAGATGGTGAG GGCTACCTCATGTCCTTCTTCGTGCTCCTCCAGATGGTGAG < 41bp 0.741640871532685 0.386743248084462 0.91662216 0.23175526 prediction 0.48328174306537 Functional Loss - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2940622 chr11:2940624 nonsynonymous SNV 0.980 4 23 hm5C_associated_SNPs_68510 0 0 1 0 2 SLC22A18 chr11:2940537 3'AG 2940537 Downstream 88bp
chr11 2940624 2940624 1 + G T LUAD 2940622 + 2940602 2940642 41 GGCTACCTCATGTCCTTCTTCGGGCTCCTCCAGATGGTGAG GGCTACCTCATGTCCTTCTTCGTGCTCCTCCAGATGGTGAG < 41bp 0.741640871532685 0.386743248084462 0.91662216 0.23175526 prediction 0.48328174306537 Functional Loss - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2940622 chr11:2940624 nonsynonymous SNV 0.980 4 23 hm5C_associated_SNPs_68510 0 0 1 0 2 SLC22A18 chr11:2940637 5'GT 2940637 Upstream 14bp
chr19 19576354 19576354 1 + C T READ 19576352 + 19576332 19576372 41 TTGCTGAGGGCAACAGAGGCCACGGCCATGGCCATGGGCAG TTGCTGAGGGCAACAGAGGCCATGGCCATGGCCATGGGCAG < 41bp 0.741638298704491 0.484565591943192 0.30839676 0.34905863 prediction 0.483276597408983 Functional Loss - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19576352 chr19:19576354 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_68511 0 0 1 0 1 GATAD2A chr19:19576423 5'GT 19576423 Upstream 70bp
chr11 125788611 125788611 1 + A C LIHC 125788610 + 125788590 125788630 41 GCGGGGAGCTGACCGTGGAGCAGCGAGCTTCCATCATTCAG GCGGGGAGCTGACCGTGGAGCCGCGAGCTTCCATCATTCAG < 41bp 0.741631236293434 0.482762158715436 0.07560006 0.103698045 prediction 0.483262472586868 Functional Loss - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125788610 chr11:125788611 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_68513 0 0 0 0 2 DDX25 chr11:125788523 3'AG 125788523 Downstream 89bp
chr11 125788611 125788611 1 + A C LIHC 125788610 + 125788590 125788630 41 GCGGGGAGCTGACCGTGGAGCAGCGAGCTTCCATCATTCAG GCGGGGAGCTGACCGTGGAGCCGCGAGCTTCCATCATTCAG < 41bp 0.741631236293434 0.482762158715436 0.07560006 0.103698045 prediction 0.483262472586868 Functional Loss - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125788610 chr11:125788611 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_68513 0 0 0 0 2 DDX25 chr11:125788685 5'GT 125788685 Upstream 75bp
chr12 132632305 132632305 1 + G A STAD 132632302 + 132632282 132632322 41 GGCAGCCGTGGATGCCGTGGCCCGGGTCACTGGCCAGCACC GGCAGCCGTGGATGCCGTGGCCCAGGTCACTGGCCAGCACC < 41bp 0.773916281199946 0.532292693110014 0.8960223 0.56840104 prediction 0.483247176179862 Functional Loss - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132632302 chr12:132632305 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_68514 0 0 1 0 1 NOC4L chr12:132632327 5'GT 132632327 Upstream 23bp
chr4 949616 949616 1 + C T STAD 949614 + 949594 949634 41 ACGAGCCACTCAGCAAGGAGCGCGTGGAAGCCTTCAGCGAC ACGAGCCACTCAGCAAGGAGCGTGTGGAAGCCTTCAGCGAC < 41bp 0.741623085305659 0.483904168691047 0.20394364 0.1636889 prediction 0.483246170611317 Functional Loss - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:949614 chr4:949616 synonymous SNV . 0 23 hm5C_associated_SNPs_68515 0 0 1 0 2 TMEM175 chr4:949543 3'AG 949543 Downstream 74bp
chr4 949616 949616 1 + C T STAD 949614 + 949594 949634 41 ACGAGCCACTCAGCAAGGAGCGCGTGGAAGCCTTCAGCGAC ACGAGCCACTCAGCAAGGAGCGTGTGGAAGCCTTCAGCGAC < 41bp 0.741623085305659 0.483904168691047 0.20394364 0.1636889 prediction 0.483246170611317 Functional Loss - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:949614 chr4:949616 synonymous SNV . 0 23 hm5C_associated_SNPs_68515 0 0 1 0 2 TMEM175 chr4:949678 5'GT 949678 Upstream 63bp
chr19 47870314 47870314 1 + C T UCEC 47870312 + 47870292 47870332 41 CCACCAGCCAGCCTGGAAACCGCCATCCTCTACCTCCGGGA CCACCAGCCAGCCTGGAAACCGTCATCCTCTACCTCCGGGA < 41bp 0.820460249974833 0.57884827536559 0.8579208 0.26678616 prediction 0.483223949218486 Functional Loss - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47870312 chr19:47870314 nonsynonymous SNV 0.717 2 23 hm5C_associated_SNPs_68517 0 0 0 0 2 DHX34 chr19:47870238 3'AG 47870238 Downstream 77bp
chr19 47870314 47870314 1 + C T UCEC 47870312 + 47870292 47870332 41 CCACCAGCCAGCCTGGAAACCGCCATCCTCTACCTCCGGGA CCACCAGCCAGCCTGGAAACCGTCATCCTCTACCTCCGGGA < 41bp 0.820460249974833 0.57884827536559 0.8579208 0.26678616 prediction 0.483223949218486 Functional Loss - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47870312 chr19:47870314 nonsynonymous SNV 0.717 2 23 hm5C_associated_SNPs_68517 0 0 0 0 2 DHX34 chr19:47870412 5'GT 47870412 Upstream 99bp
chr11 55653258 55653258 1 + T C LIHC 55653257 + 55653237 55653277 41 CTGTTTGCCGTGCTCCAACTCTCAGGAGCACCGGAATCACA CTGTTTGCCGTGCTCCAACTCCCAGGAGCACCGGAATCACA < 41bp 0.762322682473383 0.520715586497349 0.00835979 0.04213333 prediction 0.483214191952068 Functional Loss - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55653257 chr11:55653258 synonymous SNV . 0 22 hm5C_associated_SNPs_68519 0 0 0 0 1 TRIM51 chr11:55653315 5'GT 55653315 Upstream 58bp
chrX 43601242 43601242 1 + G T THCA 43601240 + 43601220 43601260 41 CTGGTGTGAGGAGCAGTACTCTGGGGGCTGCTACACGGCCT CTGGTGTGAGGAGCAGTACTCTTGGGGCTGCTACACGGCCT < 41bp 0.8998914530754 0.658294460305149 0.943153 0.7912934 prediction 0.483193985540502 Functional Loss - MAOA ENSG00000189221 CDS Human protein_coding chrX:43601240 chrX:43601242 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_68522 0 0 0 0 2 MAOA chrX:43601197 3'AG 43601197 Downstream 46bp
chrX 43601242 43601242 1 + G T THCA 43601240 + 43601220 43601260 41 CTGGTGTGAGGAGCAGTACTCTGGGGGCTGCTACACGGCCT CTGGTGTGAGGAGCAGTACTCTTGGGGCTGCTACACGGCCT < 41bp 0.8998914530754 0.658294460305149 0.943153 0.7912934 prediction 0.483193985540502 Functional Loss - MAOA ENSG00000189221 CDS Human protein_coding chrX:43601240 chrX:43601242 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_68522 0 0 0 0 2 MAOA chrX:43601294 5'GT 43601294 Upstream 53bp
chr21 47969760 47969760 1 + G T CESC 47969758 + 47969738 47969778 41 TGAGCAGCGGCCGGATGCCTCGGAGGAGGACAGCTTCCAGT TGAGCAGCGGCCGGATGCCTCGTAGGAGGACAGCTTCCAGT < 41bp 0.741590515473325 0.397820948728838 0.91667354 0.41387713 prediction 0.48318103094665 Functional Loss - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47969758 chr21:47969760 stopgain 0.914 1 23 hm5C_associated_SNPs_68525 0 0 1 0 2 DIP2A chr21:47969684 3'AG 47969684 Downstream 77bp
chr21 47969760 47969760 1 + G T CESC 47969758 + 47969738 47969778 41 TGAGCAGCGGCCGGATGCCTCGGAGGAGGACAGCTTCCAGT TGAGCAGCGGCCGGATGCCTCGTAGGAGGACAGCTTCCAGT < 41bp 0.741590515473325 0.397820948728838 0.91667354 0.41387713 prediction 0.48318103094665 Functional Loss - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47969758 chr21:47969760 stopgain 0.914 1 23 hm5C_associated_SNPs_68525 0 0 1 0 2 DIP2A chr21:47969798 5'GT 47969798 Upstream 39bp
chr22 41625593 41625593 1 + G A BLCA 41625590 + 41625570 41625610 41 CGACCCCTCAGACAGGGGTCCAAGAAGCCCCTGCTGGAGGA CGACCCCTCAGACAGGGGTCCAAAAAGCCCCTGCTGGAGGA < 41bp 0.741737262124622 0.500152336001373 0.22791025 0.11918351 prediction 0.483169852246499 Functional Loss - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41625590 chr22:41625593 synonymous SNV . 0 24 hm5C_associated_SNPs_68527 0 0 0 0 1 L3MBTL2 chr22:41625544 3'AG 41625544 Downstream 50bp
chr7 100187889 100187889 1 - C T UCEC 100187892 - 100187872 100187912 41 CTGCGACAGATGCGTCTCCACACGCCTTCCCCATCGCACAC CTGCGACAGATGCGTCTCCACACACCTTCCCCATCGCACAC < 41bp 0.753935228725404 0.512353310710997 0.006046623 0.0023323 prediction 0.483163836028813 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100187892 chr7:100187889 synonymous SNV . 0 24 hm5C_associated_SNPs_68529 0 0 0 0 2 FBXO24 chr7:100187853 5'GT 100187853 Upstream 37bp
chr7 100187889 100187889 1 - C T UCEC 100187892 - 100187872 100187912 41 CTGCGACAGATGCGTCTCCACACGCCTTCCCCATCGCACAC CTGCGACAGATGCGTCTCCACACACCTTCCCCATCGCACAC < 41bp 0.753935228725404 0.512353310710997 0.006046623 0.0023323 prediction 0.483163836028813 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100187892 chr7:100187889 synonymous SNV . 0 24 hm5C_associated_SNPs_68529 0 0 0 0 2 FBXO24 chr7:100187954 3'AG 100187954 Downstream 66bp
chr10 13237117 13237117 1 + C T rs74881009 13237115 + 13237095 13237135 41 ACAGCCCCCTGCTCAGCCTCCACGGACAGGATCCGAGTTCC ACAGCCCCCTGCTCAGCCTCCATGGACAGGATCCGAGTTCC < 41bp 0.807874819361935 0.566299569034798 0.03141573 0.015903562 prediction 0.483150500654274 Functional Loss - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13237115 chr10:13237117 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_68532 0 0 1 0 1 MCM10 chr10:13237041 3'AG 13237041 Downstream 77bp
chr6 159178317 159178317 1 + G T UCEC 159178314 + 159178294 159178334 41 TGGCATCTGGGCACGCTGGCCCGGAGAGTGTTTCTTGGAGA TGGCATCTGGGCACGCTGGCCCGTAGAGTGTTTCTTGGAGA < 41bp 0.741569212575264 0.340345052374556 0.63120246 0.1978465 prediction 0.483138425150529 Functional Loss - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159178314 chr6:159178317 synonymous SNV . 0 24 hm5C_associated_SNPs_68536 0 0 0 0 2 SYTL3 chr6:159178243 3'AG 159178243 Downstream 75bp
chr6 159178317 159178317 1 + G T UCEC 159178314 + 159178294 159178334 41 TGGCATCTGGGCACGCTGGCCCGGAGAGTGTTTCTTGGAGA TGGCATCTGGGCACGCTGGCCCGTAGAGTGTTTCTTGGAGA < 41bp 0.741569212575264 0.340345052374556 0.63120246 0.1978465 prediction 0.483138425150529 Functional Loss - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159178314 chr6:159178317 synonymous SNV . 0 24 hm5C_associated_SNPs_68536 0 0 0 0 2 SYTL3 chr6:159178413 5'GT 159178413 Upstream 97bp
chr14 23310798 23310798 1 + G T KIRC 23310796 + 23310776 23310816 41 CAGCGGCCATCGCTGCCATGCAGAAGTTTTACGGCTTGCAA CAGCGGCCATCGCTGCCATGCATAAGTTTTACGGCTTGCAA < 41bp 0.741568518625674 0.385472044454219 0.39035493 0.06255469 prediction 0.483137037251349 Functional Loss - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23310796 chr14:23310798 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_68537 0 0 0 0 2 MMP14 chr14:23310700 3'AG 23310700 Downstream 99bp
chr14 23310798 23310798 1 + G T KIRC 23310796 + 23310776 23310816 41 CAGCGGCCATCGCTGCCATGCAGAAGTTTTACGGCTTGCAA CAGCGGCCATCGCTGCCATGCATAAGTTTTACGGCTTGCAA < 41bp 0.741568518625674 0.385472044454219 0.39035493 0.06255469 prediction 0.483137037251349 Functional Loss - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23310796 chr14:23310798 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_68537 0 0 0 0 2 MMP14 chr14:23310848 5'GT 23310848 Upstream 51bp
chr2 228207487 228207487 1 + G T UCEC 228207484 + 228207464 228207504 41 GCACAGATCAGATTCTGCCCCAAGAAATAAAATTTCAAGGT GCACAGATCAGATTCTGCCCCAATAAATAAAATTTCAAGGT < 41bp 0.741561041251829 0.37819976982802 0.32354987 0.1278876 prediction 0.483122082503657 Functional Loss - MFF ENSG00000168958 CDS Human protein_coding chr2:228207484 chr2:228207487 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_68538 0 0 1 0 2 MFF chr2:228207461 3'AG 228207461 Downstream 27bp
chr2 228207487 228207487 1 + G T UCEC 228207484 + 228207464 228207504 41 GCACAGATCAGATTCTGCCCCAAGAAATAAAATTTCAAGGT GCACAGATCAGATTCTGCCCCAATAAATAAAATTTCAAGGT < 41bp 0.741561041251829 0.37819976982802 0.32354987 0.1278876 prediction 0.483122082503657 Functional Loss - MFF ENSG00000168958 CDS Human protein_coding chr2:228207484 chr2:228207487 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_68538 0 0 1 0 2 MFF chr2:228207535 5'GT 228207535 Upstream 49bp
chr19 18701700 18701700 1 + G A rs34613961 18701697 + 18701677 18701717 41 AGTTGATGGAGACGCCAGAGCTGGCGGGGCAGGAGGACGCT AGTTGATGGAGACGCCAGAGCTGACGGGGCAGGAGGACGCT < 41bp 0.742728614865752 0.501169103663669 0.81687737 0.40832007 prediction 0.483119022404166 Functional Loss - C19orf60 ENSG00000006015 CDS Human protein_coding chr19:18701697 chr19:18701700 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_68539 0 0 1 0 2 C19orf60 chr19:18701664 3'AG 18701664 Downstream 37bp
chr19 18701700 18701700 1 + G A rs34613961 18701697 + 18701677 18701717 41 AGTTGATGGAGACGCCAGAGCTGGCGGGGCAGGAGGACGCT AGTTGATGGAGACGCCAGAGCTGACGGGGCAGGAGGACGCT < 41bp 0.742728614865752 0.501169103663669 0.81687737 0.40832007 prediction 0.483119022404166 Functional Loss - C19orf60 ENSG00000006015 CDS Human protein_coding chr19:18701697 chr19:18701700 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_68539 0 0 1 0 2 C19orf60 chr19:18701743 5'GT 18701743 Upstream 44bp
chr16 27445708 27445708 1 + C T UCEC 27445706 + 27445686 27445726 41 TCGTCTGCTACACCGATTACCTCCAGACGGTCATCTGCATC TCGTCTGCTACACCGATTACCTTCAGACGGTCATCTGCATC < 41bp 0.741557895933706 0.4515121433519 0.9630581 0.28431597 prediction 0.483115791867412 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27445706 chr16:27445708 synonymous SNV . 0 23 hm5C_associated_SNPs_68541 0 0 0 0 2 IL21R chr16:27445668 3'AG 27445668 Downstream 41bp
chr16 27445708 27445708 1 + C T UCEC 27445706 + 27445686 27445726 41 TCGTCTGCTACACCGATTACCTCCAGACGGTCATCTGCATC TCGTCTGCTACACCGATTACCTTCAGACGGTCATCTGCATC < 41bp 0.741557895933706 0.4515121433519 0.9630581 0.28431597 prediction 0.483115791867412 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27445706 chr16:27445708 synonymous SNV . 0 23 hm5C_associated_SNPs_68541 0 0 0 0 2 IL21R chr16:27445770 5'GT 27445770 Upstream 63bp
chr5 132087726 132087726 1 + C T SKCM 132087724 + 132087704 132087744 41 TGCCTCAGAGGAATCCTTCCCTCCACGTCGCATCCCTGACC TGCCTCAGAGGAATCCTTCCCTTCACGTCGCATCCCTGACC < 41bp 0.848144485930451 0.606589014156631 0.93908656 0.13189343 prediction 0.483110943547639 Functional Loss - CCNI2;SEPT8 ENSG00000164402;ENSG00000205089 CDS Human protein_coding chr5:132087724 chr5:132087726 stopgain 0.961 0 23 hm5C_associated_SNPs_68543 0 0 0 0 1 CCNI2 chr5:132087658 3'AG 132087658 Downstream 69bp
chr10 18250760 18250760 1 + C T UCEC 18250758 + 18250738 18250778 41 ACAGAAGATATCTTGGCTTTCACCAGGCAGTACTTTGACAC ACAGAAGATATCTTGGCTTTCATCAGGCAGTACTTTGACAC < 41bp 0.832745298212965 0.591191551406718 0.24256986 0.21980757 prediction 0.483107493612493 Functional Loss - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18250758 chr10:18250760 nonsynonymous SNV 0.990 0 23 hm5C_associated_SNPs_68545 0 0 0 0 1 SLC39A12 chr10:18250791 5'GT 18250791 Upstream 32bp
chr2 12863643 12863643 1 + C T BLCA 12863641 + 12863621 12863661 41 GGGGGCTGGTGCTGCGGGACCTCAAGCTGCGGAAATTCATC GGGGGCTGGTGCTGCGGGACCTTAAGCTGCGGAAATTCATC < 41bp 0.741553704968324 0.447177711669896 0.121818125 0.13413364 prediction 0.483107409936647 Functional Loss - TRIB2 ENSG00000071575 CDS Human protein_coding chr2:12863641 chr2:12863643 synonymous SNV . 0 23 hm5C_associated_SNPs_68546 0 0 1 0 1 TRIB2 chr2:12863678 5'GT 12863678 Upstream 36bp
chr19 36357171 36357171 1 + G A SKCM 36357168 + 36357148 36357188 41 ACCCTCCCCCCTTGGGCCCCCAGGGACCCCTACCTTCTATG ACCCTCCCCCCTTGGGCCCCCAGAGACCCCTACCTTCTATG < 41bp 0.75901396400452 0.517462018706945 0.91242206 0.83212495 prediction 0.48310389059515 Functional Loss - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36357168 chr19:36357171 nonsynonymous SNV 0.013 2 24 hm5C_associated_SNPs_68547 0 0 0 0 1 KIRREL2 chr19:36357097 3'AG 36357097 Downstream 75bp
chr11 18424527 18424527 1 + G T LUAD 18424524 + 18424504 18424544 41 GAGTTCACCCATTAAGCTGTCATGGGTGGGTCCTTGGGGAA GAGTTCACCCATTAAGCTGTCATTGGTGGGTCCTTGGGGAA < 41bp 0.741546076589402 0.352347223522898 0.8828858 0.080721825 prediction 0.483092153178804 Functional Loss - LDHA ENSG00000134333 CDS Human protein_coding chr11:18424524 chr11:18424527 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_68549 0 0 1 0 1 LDHA chr11:18424560 5'GT 18424560 Upstream 34bp
chr12 56631103 56631103 1 + C T BLCA 56631101 + 56631081 56631121 41 GGGTCACTGCTGGGGTCTTCCTCTATGTGGCCCTTGTGGAC GGGTCACTGCTGGGGTCTTCCTTTATGTGGCCCTTGTGGAC < 41bp 0.824149690890431 0.582604479589224 0.9503957 0.21605355 prediction 0.483090422602413 Functional Loss - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56631101 chr12:56631103 synonymous SNV . 0 23 hm5C_associated_SNPs_68551 0 0 1 0 1 SLC39A5 chr12:56631124 5'GT 56631124 Upstream 22bp
chr11 75431194 75431194 1 + G T LUAD 75431191 + 75431171 75431211 41 TGCTGGACTATATGGAAGTACATGAAGGACTATTTCCCCAT TGCTGGACTATATGGAAGTACATTAAGGACTATTTCCCCAT < 41bp 0.741543979959127 0.343343205945716 0.39372987 0.3181011 prediction 0.483087959918253 Functional Loss - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75431191 chr11:75431194 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_68552 0 0 1 0 1 MOGAT2 chr11:75431215 5'GT 75431215 Upstream 22bp
chr17 27068540 27068540 1 + G A rs192081177 27068537 + 27068517 27068557 41 TTGGATGAGACACACCCTTACACGGTGACTTCCGTGTCCTG TTGGATGAGACACACCCTTACACAGTGACTTCCGTGTCCTG < 41bp 0.743322266495468 0.501778821944375 0.75952387 0.26859528 prediction 0.483086889102186 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27068537 chr17:27068540 synonymous SNV . 0 24 hm5C_associated_SNPs_68553 0 0 1 0 1 NEK8 chr17:27068589 5'GT 27068589 Upstream 50bp
chr9 129796780 129796780 1 + G T STAD 129796778 + 129796758 129796798 41 CCTAACGTTGTGGCCTTTACCCGGAGGTTTAACCAGGTAAG CCTAACGTTGTGGCCTTTACCCTGAGGTTTAACCAGGTAAG < 41bp 0.741543147520326 0.393649629333535 0.92211485 0.38726312 prediction 0.483086295040652 Functional Loss - RALGPS1 ENSG00000136828 CDS Human protein_coding chr9:129796778 chr9:129796780 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_68554 0 0 1 0 2 RALGPS1 chr9:129796710 3'AG 129796710 Downstream 71bp
chr9 129796780 129796780 1 + G T STAD 129796778 + 129796758 129796798 41 CCTAACGTTGTGGCCTTTACCCGGAGGTTTAACCAGGTAAG CCTAACGTTGTGGCCTTTACCCTGAGGTTTAACCAGGTAAG < 41bp 0.741543147520326 0.393649629333535 0.92211485 0.38726312 prediction 0.483086295040652 Functional Loss - RALGPS1 ENSG00000136828 CDS Human protein_coding chr9:129796778 chr9:129796780 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_68554 0 0 1 0 2 RALGPS1 chr9:129796793 5'GT 129796793 Upstream 14bp
chr10 119017365 119017365 1 + G T LUSC 119017363 + 119017343 119017383 41 CTGGAGCCAGCCCTGCCCATCTGGATGATGGAGACCATGTG CTGGAGCCAGCCCTGCCCATCTTGATGATGGAGACCATGTG < 41bp 0.896305885890234 0.654767579541528 0.121783555 0.027539492 prediction 0.483076612697411 Functional Loss - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119017363 chr10:119017365 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_68556 0 0 0 0 2 SLC18A2 chr10:119017308 3'AG 119017308 Downstream 58bp
chr10 119017365 119017365 1 + G T LUSC 119017363 + 119017343 119017383 41 CTGGAGCCAGCCCTGCCCATCTGGATGATGGAGACCATGTG CTGGAGCCAGCCCTGCCCATCTTGATGATGGAGACCATGTG < 41bp 0.896305885890234 0.654767579541528 0.121783555 0.027539492 prediction 0.483076612697411 Functional Loss - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119017363 chr10:119017365 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_68556 0 0 0 0 2 SLC18A2 chr10:119017403 5'GT 119017403 Upstream 39bp
chr2 233244989 233244989 1 + G T LUSC 233244986 + 233244966 233245006 41 ACAGCCAAGGTGGGACCAGGCTGGACGGGAAGAATCTGGTG ACAGCCAAGGTGGGACCAGGCTGTACGGGAAGAATCTGGTG < 41bp 0.92156415571549 0.680027765113731 0.36540478 0.335127 prediction 0.483072781203518 Functional Loss - ALPP ENSG00000163283 CDS Human protein_coding chr2:233244986 chr2:233244989 nonsynonymous SNV 0.031 5 24 hm5C_associated_SNPs_68557 0 0 0 0 2 ALPP chr2:233244896 3'AG 233244896 Downstream 94bp
chr2 233244989 233244989 1 + G T LUSC 233244986 + 233244966 233245006 41 ACAGCCAAGGTGGGACCAGGCTGGACGGGAAGAATCTGGTG ACAGCCAAGGTGGGACCAGGCTGTACGGGAAGAATCTGGTG < 41bp 0.92156415571549 0.680027765113731 0.36540478 0.335127 prediction 0.483072781203518 Functional Loss - ALPP ENSG00000163283 CDS Human protein_coding chr2:233244986 chr2:233244989 nonsynonymous SNV 0.031 5 24 hm5C_associated_SNPs_68557 0 0 0 0 2 ALPP chr2:233245030 5'GT 233245030 Upstream 42bp
chr1 156902259 156902259 1 + G A rs822430 156902256 + 156902236 156902276 41 GGGCTGGAGGGCTTCCTCGCCACGGTGCAGTATCAGATGCA GGGCTGGAGGGCTTCCTCGCCACAGTGCAGTATCAGATGCA < 41bp 0.74692084667596 0.505393058923606 0.83062565 0.47215796 prediction 0.483055575504709 Functional Loss - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156902256 chr1:156902259 synonymous SNV . 0 24 hm5C_associated_SNPs_68559 0 0 0 0 2 LRRC71 chr1:156902216 3'AG 156902216 Downstream 44bp
chr1 156902259 156902259 1 + G A rs822430 156902256 + 156902236 156902276 41 GGGCTGGAGGGCTTCCTCGCCACGGTGCAGTATCAGATGCA GGGCTGGAGGGCTTCCTCGCCACAGTGCAGTATCAGATGCA < 41bp 0.74692084667596 0.505393058923606 0.83062565 0.47215796 prediction 0.483055575504709 Functional Loss - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156902256 chr1:156902259 synonymous SNV . 0 24 hm5C_associated_SNPs_68559 0 0 0 0 2 LRRC71 chr1:156902337 5'GT 156902337 Upstream 79bp
chr4 74303922 74303922 1 + G T UCEC 74303919 + 74303899 74303939 41 TATTTTTTGCCCAGTTTGTTCAAGAAGCCACTTACAAGGAA TATTTTTTGCCCAGTTTGTTCAATAAGCCACTTACAAGGAA < 41bp 0.741525836904868 0.364282285746744 0.5495746 0.19895124 prediction 0.483051673809735 Functional Loss - AFP ENSG00000081051 CDS Human protein_coding chr4:74303919 chr4:74303922 stopgain 0.500 0 24 hm5C_associated_SNPs_68561 0 0 1 0 1 AFP chr4:74303891 3'AG 74303891 Downstream 32bp
chr4 40800894 40800894 1 + A C UCEC 40800890 + 40800870 40800910 41 TTAAGAAAGCACTGGAATTTCAAGACCTTGGGAATAAAGGA TTAAGAAAGCACTGGAATTTCAAGCCCTTGGGAATAAAGGA < 41bp 0.741525102343993 0.326206588466965 0.07413152 0.04176584 prediction 0.483050204687985 Functional Loss - NSUN7 ENSG00000179299 CDS Human protein_coding chr4:40800890 chr4:40800894 nonsynonymous SNV 0.367 0 25 hm5C_associated_SNPs_68562 0 0 0 0 2 NSUN7 chr4:40800804 3'AG 40800804 Downstream 91bp
chr4 40800894 40800894 1 + A C UCEC 40800890 + 40800870 40800910 41 TTAAGAAAGCACTGGAATTTCAAGACCTTGGGAATAAAGGA TTAAGAAAGCACTGGAATTTCAAGCCCTTGGGAATAAAGGA < 41bp 0.741525102343993 0.326206588466965 0.07413152 0.04176584 prediction 0.483050204687985 Functional Loss - NSUN7 ENSG00000179299 CDS Human protein_coding chr4:40800890 chr4:40800894 nonsynonymous SNV 0.367 0 25 hm5C_associated_SNPs_68562 0 0 0 0 2 NSUN7 chr4:40800921 5'GT 40800921 Upstream 28bp
chr12 6626069 6626069 1 + G T LUSC 6626066 + 6626046 6626086 41 AGGTTCTCAGTGGCGATCAACTGGAAGCAGCAGCCCGAGAC AGGTTCTCAGTGGCGATCAACTGTAAGCAGCAGCCCGAGAC < 41bp 0.920397040234674 0.678875409616165 0.69347143 0.8076266 prediction 0.483043261237019 Functional Loss - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6626066 chr12:6626069 stopgain 0.484 1 24 hm5C_associated_SNPs_68564 0 0 1 0 1 NCAPD2 chr12:6625994 3'AG 6625994 Downstream 76bp
chrX 153533747 153533747 1 + G A CESC 153533744 + 153533724 153533764 41 AGCAGTCAGATCCAGAGAATCCGGACAACGACCGATTTGTC AGCAGTCAGATCCAGAGAATCCGAACAACGACCGATTTGTC < 41bp 0.744813618037648 0.503294196911407 0.82945883 0.14793783 prediction 0.483038842252483 Functional Loss - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153533744 chrX:153533747 nonsynonymous SNV 0.073 0 24 hm5C_associated_SNPs_68565 0 0 0 0 3 TKTL1 chrX:153533656 3'AG 153533656 Downstream 92bp
chrX 153533747 153533747 1 + G A CESC 153533744 + 153533724 153533764 41 AGCAGTCAGATCCAGAGAATCCGGACAACGACCGATTTGTC AGCAGTCAGATCCAGAGAATCCGAACAACGACCGATTTGTC < 41bp 0.744813618037648 0.503294196911407 0.82945883 0.14793783 prediction 0.483038842252483 Functional Loss - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153533744 chrX:153533747 nonsynonymous SNV 0.073 0 24 hm5C_associated_SNPs_68565 0 0 0 0 3 TKTL1 chrX:153533674 3'AG 153533674 Downstream 74bp
chrX 153533747 153533747 1 + G A CESC 153533744 + 153533724 153533764 41 AGCAGTCAGATCCAGAGAATCCGGACAACGACCGATTTGTC AGCAGTCAGATCCAGAGAATCCGAACAACGACCGATTTGTC < 41bp 0.744813618037648 0.503294196911407 0.82945883 0.14793783 prediction 0.483038842252483 Functional Loss - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153533744 chrX:153533747 nonsynonymous SNV 0.073 0 24 hm5C_associated_SNPs_68565 0 0 0 0 3 TKTL1 chrX:153533773 5'GT 153533773 Upstream 27bp
chr14 39818102 39818102 1 + T C STAD 39818101 + 39818081 39818121 41 ACCTCCTTTCCCCCCACCTCCTCCAGGAGCCATGTTTGGAG ACCTCCTTTCCCCCCACCTCCCCCAGGAGCCATGTTTGGAG < 41bp 0.823569363727255 0.582054583853576 0.94967663 0.0671621 prediction 0.483029559747359 Functional Loss - MIA2 ENSG00000150527;ENSG00000258941 CDS Human other chr14:39818101 chr14:39818102 synonymous SNV . 0 22 hm5C_associated_SNPs_68566 0 0 1 0 1 MIA2 chr14:39818181 5'GT 39818181 Upstream 80bp
chr13 28009582 28009582 1 + C T UCEC 28009580 + 28009560 28009600 41 ATTCCCAAAGGTCAAAAAATCTCGTGAAAAACGGAGTTTGG ATTCCCAAAGGTCAAAAAATCTTGTGAAAAACGGAGTTTGG < 41bp 0.741509008381975 0.486409538796911 0.37861782 0.30681378 prediction 0.48301801676395 Functional Loss - GTF3A ENSG00000122034 CDS Human protein_coding chr13:28009580 chr13:28009582 nonsynonymous SNV 0.915 2 23 hm5C_associated_SNPs_68567 0 0 1 0 1 GTF3A chr13:28009570 3'AG 28009570 Downstream 13bp
chr3 185324227 185324227 1 + G T UCEC 185324225 + 185324205 185324245 41 ACCTCAGGAACAGGCTGTAACAGAGATGATTTCTGAAGAGA ACCTCAGGAACAGGCTGTAACATAGATGATTTCTGAAGAGA < 41bp 0.7415053079892 0.392657743033494 0.887612 0.45833433 prediction 0.4830106159784 Functional Loss - SENP2 ENSG00000163904 CDS Human protein_coding chr3:185324225 chr3:185324227 stopgain 0.954 1 23 hm5C_associated_SNPs_68568 0 0 1 0 1 SENP2 chr3:185324286 5'GT 185324286 Upstream 60bp
chr7 50450323 50450323 1 + G T LUAD 50450320 + 50450300 50450340 41 CGGCACATCAAGCTGCATTCCGGGGAGAAGCCCTTCAAATG CGGCACATCAAGCTGCATTCCGGTGAGAAGCCCTTCAAATG < 41bp 0.892179880722233 0.650684451521478 0.9315287 0.5582949 prediction 0.48299085840151 Functional Loss - IKZF1 ENSG00000185811 CDS Human protein_coding chr7:50450320 chr7:50450323 synonymous SNV . 0 24 hm5C_associated_SNPs_68573 0 0 1 0 2 IKZF1 chr7:50450238 3'AG 50450238 Downstream 86bp
chr7 50450323 50450323 1 + G T LUAD 50450320 + 50450300 50450340 41 CGGCACATCAAGCTGCATTCCGGGGAGAAGCCCTTCAAATG CGGCACATCAAGCTGCATTCCGGTGAGAAGCCCTTCAAATG < 41bp 0.892179880722233 0.650684451521478 0.9315287 0.5582949 prediction 0.48299085840151 Functional Loss - IKZF1 ENSG00000185811 CDS Human protein_coding chr7:50450320 chr7:50450323 synonymous SNV . 0 24 hm5C_associated_SNPs_68573 0 0 1 0 2 IKZF1 chr7:50450405 5'GT 50450405 Upstream 83bp
chr7 151073746 151073746 1 + C T rs370586827 151073744 + 151073724 151073764 41 TGTACATGGGTTTTGATGCACTCGTGGCCGAAGCTGCGCTG TGTACATGGGTTTTGATGCACTTGTGGCCGAAGCTGCGCTG < 41bp 0.765219284635881 0.523726780945893 0.24107397 0.20846951 prediction 0.482985007379977 Functional Loss - NUB1 ENSG00000013374 CDS Human protein_coding chr7:151073744 chr7:151073746 synonymous SNV . 0 23 hm5C_associated_SNPs_68574 0 0 1 0 1 NUB1 chr7:151073720 3'AG 151073720 Downstream 27bp
chr3 107447705 107447705 1 + C T COAD 107447703 + 107447683 107447723 41 CCCAACACCCACTGTCAATCCACGAAAGAAACTTTGGGCCT CCCAACACCCACTGTCAATCCATGAAAGAAACTTTGGGCCT < 41bp 0.840543787044357 0.599051599906575 0.14304781 0.092303514 prediction 0.482984374275563 Functional Loss - BBX ENSG00000114439 CDS Human protein_coding chr3:107447703 chr3:107447705 stopgain 1.000 1 23 hm5C_associated_SNPs_68575 0 0 1 0 1 BBX chr3:107447612 3'AG 107447612 Downstream 94bp
chr4 71232448 71232448 1 + G T UCEC 71232446 + 71232426 71232466 41 ACCATGTTTTCCTTTTGGAACAGGATTTGTTCCACCACCCC ACCATGTTTTCCTTTTGGAACATGATTTGTTCCACCACCCC < 41bp 0.883311002379127 0.641822250704449 0.9203408 0.53200406 prediction 0.482977503349356 Functional Loss - SMR3A ENSG00000109208 CDS Human protein_coding chr4:71232446 chr4:71232448 stopgain 0.016 0 23 hm5C_associated_SNPs_68576 0 0 0 0 1 SMR3A chr4:71232361 3'AG 71232361 Downstream 88bp
chr19 45515272 45515272 1 + G C LUAD 45515271 + 45515251 45515291 41 GCCCGGGCGAGGGGCTGCCACGCCTGGTGTCTCGCGGGGCT GCCCGGGCGAGGGGCTGCCACCCCTGGTGTCTCGCGGGGCT < 41bp 0.865577452229288 0.62408906978671 0.203543 0.10191387 prediction 0.482976764885157 Functional Loss - RELB ENSG00000104856 CDS Human protein_coding chr19:45515271 chr19:45515272 nonsynonymous SNV 0.484 1 22 hm5C_associated_SNPs_68577 0 0 0 0 1 RELB chr19:45515194 3'AG 45515194 Downstream 79bp
chr2 202137431 202137431 1 + A C UCEC 202137427 + 202137407 202137447 41 GAGAAGGAAAGTTGGACATCCTGAAAAGAGTCTGTGCCCAA GAGAAGGAAAGTTGGACATCCTGACAAGAGTCTGTGCCCAA < 41bp 0.741484980421558 0.367155945713921 0.111650646 0.10540256 prediction 0.482969960843116 Functional Loss - CASP8 ENSG00000064012 CDS Human protein_coding chr2:202137427 chr2:202137431 nonsynonymous SNV 0.618 3 25 hm5C_associated_SNPs_68580 0 0 1 0 1 CASP8 chr2:202137361 3'AG 202137361 Downstream 71bp
chr1 84961625 84961625 1 + C T HNSC 84961623 + 84961603 84961643 41 AATTCTGAATAATTTTACAACACGGCTGGGTCATTCAATTG AATTCTGAATAATTTTACAACATGGCTGGGTCATTCAATTG < 41bp 0.741475843903152 0.477010601341952 0.01594022 0.025010288 prediction 0.482951687806304 Functional Loss - RPF1 ENSG00000117133 CDS Human protein_coding chr1:84961623 chr1:84961625 nonsynonymous SNV 0.945 3 23 hm5C_associated_SNPs_68586 0 0 1 0 1 RPF1 chr1:84961565 3'AG 84961565 Downstream 61bp
chr3 133119364 133119364 1 + G A rs148759360 133119361 + 133119341 133119381 41 GCACCTGGAGAGCAAAGCCACACGCTCGGGAAACTGGGGTG GCACCTGGAGAGCAAAGCCACACACTCGGGAAACTGGGGTG < 41bp 0.753327200203841 0.511855709761299 0.25229943 0.14086732 prediction 0.482942980885084 Functional Loss - BFSP2 ENSG00000170819 CDS Human protein_coding chr3:133119361 chr3:133119364 nonsynonymous SNV 0.172 2 24 hm5C_associated_SNPs_68590 0 0 0 0 1 BFSP2 chr3:133119416 5'GT 133119416 Upstream 53bp
chr19 51363277 51363277 1 + C T HNSC 51363275 + 51363255 51363295 41 AATGGTGTGCTTCAAGGTATCACGTCATGGGGCAGTGAACC AATGGTGTGCTTCAAGGTATCATGTCATGGGGCAGTGAACC < 41bp 0.741687989407435 0.500221103284489 0.1497865 0.12739798 prediction 0.482933772245891 Functional Loss - KLK3 ENSG00000142515 CDS Human protein_coding chr19:51363275 chr19:51363277 nonsynonymous SNV 0.012 3 23 hm5C_associated_SNPs_68593 0 0 0 0 1 KLK3 chr19:51363228 3'AG 51363228 Downstream 50bp
chr10 74653614 74653614 1 + G C OV 74653613 + 74653593 74653633 41 ACAGGCACCTCCGTGTCACCCGTGGGTGAGTCTCATGTCAA ACAGGCACCTCCGTGTCACCCCTGGGTGAGTCTCATGTCAA < 41bp 0.741466299664799 0.433836239372461 0.88042927 0.10939446 prediction 0.482932599329599 Functional Loss - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74653613 chr10:74653614 nonsynonymous SNV 0.008 1 22 hm5C_associated_SNPs_68594 0 0 0 0 1 OIT3 chr10:74653617 5'GT 74653617 Upstream 4bp
chr7 150762029 150762029 1 + G A rs182549949 150762026 + 150762006 150762046 41 GCCCCACCAGGAGGCGACTCCTCGGGCCTCCAAAGGGGCCC GCCCCACCAGGAGGCGACTCCTCAGGCCTCCAAAGGGGCCC < 41bp 0.741463532654912 0.497212760008913 0.895133 0.43028867 prediction 0.482927065309825 Functional Loss - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150762026 chr7:150762029 nonsynonymous SNV 0.894 0 24 hm5C_associated_SNPs_68595 0 0 1 0 2 SLC4A2 chr7:150761935 3'AG 150761935 Downstream 95bp
chr7 150762029 150762029 1 + G A rs182549949 150762026 + 150762006 150762046 41 GCCCCACCAGGAGGCGACTCCTCGGGCCTCCAAAGGGGCCC GCCCCACCAGGAGGCGACTCCTCAGGCCTCCAAAGGGGCCC < 41bp 0.741463532654912 0.497212760008913 0.895133 0.43028867 prediction 0.482927065309825 Functional Loss - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150762026 chr7:150762029 nonsynonymous SNV 0.894 0 24 hm5C_associated_SNPs_68595 0 0 1 0 2 SLC4A2 chr7:150762053 5'GT 150762053 Upstream 25bp
chr4 52938118 52938118 1 + A T OV 52938114 + 52938094 52938134 41 TTCAAGCTCAGGAGGATGCCCGCCACAGAAACACAGATCAG TTCAAGCTCAGGAGGATGCCCGCCTCAGAAACACAGATCAG < 41bp 0.741444309099438 0.396783537286884 0.3027081 0.10408124 prediction 0.482888618198876 Functional Loss - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52938114 chr4:52938118 nonsynonymous SNV 0.231 1 25 hm5C_associated_SNPs_68601 0 0 0 0 1 SPATA18 chr4:52938083 3'AG 52938083 Downstream 36bp
chr5 6750571 6750571 1 + A C LUSC 6750567 + 6750547 6750587 41 GTCCAGCCCCCAGCTCCTGTCTTCAGGCTCCTCGGCCTCTT GTCCAGCCCCCAGCTCCTGTCTTCCGGCTCCTCGGCCTCTT < 41bp 0.741439664786684 0.301611496174238 0.2586339 0.07677472 prediction 0.482879329573368 Functional Loss - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6750567 chr5:6750571 synonymous SNV . 0 25 hm5C_associated_SNPs_68602 0 0 1 0 1 PAPD7 chr5:6750616 5'GT 6750616 Upstream 46bp
chr15 28900772 28900772 1 + A C SKCM 28900771 + 28900751 28900791 41 ACTCAGTGGAATGGGCTCATCAACAAGTACATCAACTCCCA ACTCAGTGGAATGGGCTCATCCACAAGTACATCAACTCCCA < 41bp 0.744683439733564 0.503244869794151 0.07544422 0.04801768 prediction 0.482877139878826 Functional Loss - HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28900771 chr15:28900772 . . 0 22 hm5C_associated_SNPs_68604 0 0 0 0 1 HERC2P9 chr15:28900837 5'GT 28900837 Upstream 66bp
chr1 155296421 155296421 1 + G A rs140690414 155296418 + 155296398 155296438 41 CAGGATTTTTCTCCCTGGCCCGCGGTGGTTGTCCCTCCCTG CAGGATTTTTCTCCCTGGCCCGCAGTGGTTGTCCCTCCCTG < 41bp 0.741433094035541 0.491607308605066 0.7544699 0.24154845 prediction 0.482866188071083 Functional Loss - RUSC1 ENSG00000160753 CDS Human protein_coding chr1:155296418 chr1:155296421 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_68607 0 0 1 0 1 RUSC1 chr1:155296371 3'AG 155296371 Downstream 51bp
chr16 31230829 31230829 1 + G T SKCM 31230827 + 31230807 31230847 41 GGTGGCGGACAAGCCGCAGACTGAGTTCCTCATGGTGAGCA GGTGGCGGACAAGCCGCAGACTTAGTTCCTCATGGTGAGCA < 41bp 0.741432562065038 0.393996415535375 0.6498061 0.4090768 prediction 0.482865124130076 Functional Loss - TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31230827 chr16:31230829 stopgain 0.996 1 23 hm5C_associated_SNPs_68608 0 0 0 0 1 TRIM72 chr16:31230840 5'GT 31230840 Upstream 12bp
chr11 123485468 123485468 1 + G T LUAD 123485465 + 123485445 123485485 41 CCCCACAGGTTCCACACAGACGCGGCATATCCCGGAGGACA CCCCACAGGTTCCACACAGACGCTGCATATCCCGGAGGACA < 41bp 0.74142830989827 0.339862036756962 0.038817465 0.005738914 prediction 0.48285661979654 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123485465 chr11:123485468 nonsynonymous SNV 0.984 2 24 hm5C_associated_SNPs_68613 0 0 0 0 2 GRAMD1B chr11:123485453 3'AG 123485453 Downstream 16bp
chr11 123485468 123485468 1 + G T LUAD 123485465 + 123485445 123485485 41 CCCCACAGGTTCCACACAGACGCGGCATATCCCGGAGGACA CCCCACAGGTTCCACACAGACGCTGCATATCCCGGAGGACA < 41bp 0.74142830989827 0.339862036756962 0.038817465 0.005738914 prediction 0.48285661979654 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123485465 chr11:123485468 nonsynonymous SNV 0.984 2 24 hm5C_associated_SNPs_68613 0 0 0 0 2 GRAMD1B chr11:123485543 5'GT 123485543 Upstream 76bp
chr19 15222216 15222216 1 + T C LIHC 15222215 + 15222195 15222235 41 CAGTGCAGCGGTCTGCCTATCTGAGGACCTGTACCCCGATA CAGTGCAGCGGTCTGCCTATCCGAGGACCTGTACCCCGATA < 41bp 0.741758149816984 0.500334762845469 0.5112205 0.91361576 prediction 0.48284677394303 Functional Loss - SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15222215 chr19:15222216 synonymous SNV . 0 22 hm5C_associated_SNPs_68614 0 0 0 0 2 SYDE1 chr19:15222124 3'AG 15222124 Downstream 93bp
chr19 15222216 15222216 1 + T C LIHC 15222215 + 15222195 15222235 41 CAGTGCAGCGGTCTGCCTATCTGAGGACCTGTACCCCGATA CAGTGCAGCGGTCTGCCTATCCGAGGACCTGTACCCCGATA < 41bp 0.741758149816984 0.500334762845469 0.5112205 0.91361576 prediction 0.48284677394303 Functional Loss - SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15222215 chr19:15222216 synonymous SNV . 0 22 hm5C_associated_SNPs_68614 0 0 0 0 2 SYDE1 chr19:15222250 5'GT 15222250 Upstream 35bp
chr14 45665409 45665409 1 + G T LAML 45665406 + 45665386 45665426 41 TTTGGAGGATTCTAGCACTTCAGGGGCATCCTGTTCCAAGT TTTGGAGGATTCTAGCACTTCAGTGGCATCCTGTTCCAAGT < 41bp 0.741416623488253 0.356165175532777 0.8834474 0.124925315 prediction 0.482833246976506 Functional Loss - FANCM ENSG00000187790 CDS Human protein_coding chr14:45665406 chr14:45665409 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_68615 0 0 1 0 1 FANCM chr14:45665375 3'AG 45665375 Downstream 35bp
chr11 67074410 67074410 1 + G T PRAD 67074408 + 67074388 67074428 41 GCCAGGATGAGACGGTCCTCCTGGGCGTGGATTTCCCTGAC GCCAGGATGAGACGGTCCTCCTTGGCGTGGATTTCCCTGAC < 41bp 0.799322833582703 0.557906457329453 0.8636016 0.13904703 prediction 0.4828327525065 Functional Loss - SSH3 ENSG00000172830 CDS Human protein_coding chr11:67074408 chr11:67074410 synonymous SNV . 0 23 hm5C_associated_SNPs_68616 0 0 0 0 1 SSH3 chr11:67074433 5'GT 67074433 Upstream 24bp
chr1 6270962 6270962 1 + G A COAD 6270959 + 6270939 6270979 41 GAGAGGCTGCAGGGCATCGTCACGCGGCCGCACCACCTAAG GAGAGGCTGCAGGGCATCGTCACACGGCCGCACCACCTAAG < 41bp 0.769166696965873 0.527753012139494 0.86500365 0.80824065 prediction 0.482827369652759 Functional Loss - RNF207 ENSG00000158286 CDS Human protein_coding chr1:6270959 chr1:6270962 synonymous SNV . 0 24 hm5C_associated_SNPs_68617 0 0 1 0 2 RNF207 chr1:6270930 3'AG 6270930 Downstream 33bp
chr1 6270962 6270962 1 + G A COAD 6270959 + 6270939 6270979 41 GAGAGGCTGCAGGGCATCGTCACGCGGCCGCACCACCTAAG GAGAGGCTGCAGGGCATCGTCACACGGCCGCACCACCTAAG < 41bp 0.769166696965873 0.527753012139494 0.86500365 0.80824065 prediction 0.482827369652759 Functional Loss - RNF207 ENSG00000158286 CDS Human protein_coding chr1:6270959 chr1:6270962 synonymous SNV . 0 24 hm5C_associated_SNPs_68617 0 0 1 0 2 RNF207 chr1:6270998 5'GT 6270998 Upstream 37bp
chr1 196654313 196654313 1 + G A SKCM 196654310 + 196654290 196654330 41 ATGGTTTTTATCCTGCAACCCGGGGAAATACAGCAAAATGC ATGGTTTTTATCCTGCAACCCGGAGAAATACAGCAAAATGC < 41bp 0.741671136960242 0.500266912565018 0.37402123 0.19304803 prediction 0.482808448790448 Functional Loss - CFH ENSG00000000971 CDS Human protein_coding chr1:196654310 chr1:196654313 nonsynonymous SNV 0.000 3 24 hm5C_associated_SNPs_68619 0 0 1 0 1 CFH chr1:196654367 5'GT 196654367 Upstream 55bp
chr19 41071420 41071420 1 + G T CESC 41071417 + 41071397 41071437 41 TGCCTGAGCTGACCACCTGCCAGGAGCTGGGGCGATCTCTG TGCCTGAGCTGACCACCTGCCAGTAGCTGGGGCGATCTCTG < 41bp 0.741401449945336 0.35773807499977 0.8804053 0.2949201 prediction 0.482802899890673 Functional Loss - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41071417 chr19:41071420 stopgain 0.996 0 24 hm5C_associated_SNPs_68622 0 0 0 0 2 SPTBN4 chr19:41071329 3'AG 41071329 Downstream 92bp
chr19 41071420 41071420 1 + G T CESC 41071417 + 41071397 41071437 41 TGCCTGAGCTGACCACCTGCCAGGAGCTGGGGCGATCTCTG TGCCTGAGCTGACCACCTGCCAGTAGCTGGGGCGATCTCTG < 41bp 0.741401449945336 0.35773807499977 0.8804053 0.2949201 prediction 0.482802899890673 Functional Loss - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41071417 chr19:41071420 stopgain 0.996 0 24 hm5C_associated_SNPs_68622 0 0 0 0 2 SPTBN4 chr19:41071467 5'GT 41071467 Upstream 48bp
chr17 79080634 79080634 1 + G A LUAD 79080631 + 79080611 79080651 41 CCCCGATTACGGCGCCGCCTCCCGGGCCTTCCCCGCCCAGA CCCCGATTACGGCGCCGCCTCCCAGGCCTTCCCCGCCCAGA < 41bp 0.74867089256789 0.507276814607417 0.89804554 0.32055748 prediction 0.482788155920946 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080631 chr17:79080634 nonsynonymous SNV 0.410 0 24 hm5C_associated_SNPs_68625 0 0 1 0 2 BAIAP2 chr17:79080545 3'AG 79080545 Downstream 90bp
chr17 79080634 79080634 1 + G A LUAD 79080631 + 79080611 79080651 41 CCCCGATTACGGCGCCGCCTCCCGGGCCTTCCCCGCCCAGA CCCCGATTACGGCGCCGCCTCCCAGGCCTTCCCCGCCCAGA < 41bp 0.74867089256789 0.507276814607417 0.89804554 0.32055748 prediction 0.482788155920946 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080631 chr17:79080634 nonsynonymous SNV 0.410 0 24 hm5C_associated_SNPs_68625 0 0 1 0 2 BAIAP2 chr17:79080707 5'GT 79080707 Upstream 74bp
chr1 156877782 156877782 1 + G C rs145275734 156877781 + 156877761 156877801 41 CAGGAATGTCGCTGCCACAACGGCGGCCTCTGTGACCGATT CAGGAATGTCGCTGCCACAACCGCGGCCTCTGTGACCGATT < 41bp 0.74138771360598 0.421096613484773 0.5660789 0.5801226 prediction 0.48277542721196 Functional Loss - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156877781 chr1:156877782 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_68627 0 0 0 0 2 PEAR1 chr1:156877707 3'AG 156877707 Downstream 76bp
chr1 156877782 156877782 1 + G C rs145275734 156877781 + 156877761 156877801 41 CAGGAATGTCGCTGCCACAACGGCGGCCTCTGTGACCGATT CAGGAATGTCGCTGCCACAACCGCGGCCTCTGTGACCGATT < 41bp 0.74138771360598 0.421096613484773 0.5660789 0.5801226 prediction 0.48277542721196 Functional Loss - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156877781 chr1:156877782 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_68627 0 0 0 0 2 PEAR1 chr1:156877843 5'GT 156877843 Upstream 62bp
chr12 4702231 4702231 1 + C T BLCA 4702229 + 4702209 4702249 41 CAAAGTGAAATCCTGGGCTACGCGGAGCTGTGGTTCCTGGG CAAAGTGAAATCCTGGGCTACGTGGAGCTGTGGTTCCTGGG < 41bp 0.74138223066107 0.465725896783021 0.74201626 0.5766801 prediction 0.482764461322141 Functional Loss - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4702229 chr12:4702231 nonsynonymous SNV 0.989 1 23 hm5C_associated_SNPs_68629 0 0 0 0 1 DYRK4 chr12:4702168 3'AG 4702168 Downstream 64bp
chr5 36168476 36168476 1 + G T LUSC 36168473 + 36168453 36168493 41 TTATAGAAGTGTCCACCCTCCACGGCATACTGTCTCAGTGT TTATAGAAGTGTCCACCCTCCACTGCATACTGTCTCAGTGT < 41bp 0.741373122082256 0.347722452390647 0.22856092 0.13556385 prediction 0.482746244164513 Functional Loss - SKP2 ENSG00000145604 CDS Human protein_coding chr5:36168473 chr5:36168476 nonsynonymous SNV 0.377 2 24 hm5C_associated_SNPs_68630 0 0 1 0 2 SKP2 chr5:36168415 3'AG 36168415 Downstream 62bp
chr5 36168476 36168476 1 + G T LUSC 36168473 + 36168453 36168493 41 TTATAGAAGTGTCCACCCTCCACGGCATACTGTCTCAGTGT TTATAGAAGTGTCCACCCTCCACTGCATACTGTCTCAGTGT < 41bp 0.741373122082256 0.347722452390647 0.22856092 0.13556385 prediction 0.482746244164513 Functional Loss - SKP2 ENSG00000145604 CDS Human protein_coding chr5:36168473 chr5:36168476 nonsynonymous SNV 0.377 2 24 hm5C_associated_SNPs_68630 0 0 1 0 2 SKP2 chr5:36168549 5'GT 36168549 Upstream 74bp
chr17 4053285 4053285 1 + C T HNSC 4053283 + 4053263 4053303 41 CCGCTGAGATGCTGACACTTCACAATTGGCTTTCATTCTAT CCGCTGAGATGCTGACACTTCATAATTGGCTTTCATTCTAT < 41bp 0.833938600180185 0.592569184108615 0.018358111 0.020444691 prediction 0.48273883214314 Functional Loss - CYB5D2 ENSG00000167740 CDS Human protein_coding chr17:4053283 chr17:4053285 synonymous SNV . 0 23 hm5C_associated_SNPs_68631 0 0 0 0 1 CYB5D2 chr17:4053325 5'GT 4053325 Upstream 41bp
chr19 12865843 12865843 1 + G A SKCM 12865840 + 12865820 12865860 41 ACAGCGCCCTTAAGCTGCTGCTCGAGGTGGGCCCAACCAGG ACAGCGCCCTTAAGCTGCTGCTCAAGGTGGGCCCAACCAGG < 41bp 0.758722710269379 0.517353853577672 0.08326265 0.4253952 prediction 0.482737713383415 Functional Loss - BEST2 ENSG00000039987 CDS Human protein_coding chr19:12865840 chr19:12865843 nonsynonymous SNV 0.956 3 24 hm5C_associated_SNPs_68632 0 0 0 0 1 BEST2 chr19:12865845 5'GT 12865845 Upstream 3bp
chr19 47673154 47673154 1 + C T UCEC 47673152 + 47673132 47673172 41 GCAAAGGCTGCTCTGAAGCGCACGACCTCCGACTACTTTCT GCAAAGGCTGCTCTGAAGCGCATGACCTCCGACTACTTTCT < 41bp 0.786016034022168 0.544658124498911 0.10877618 0.20520163 prediction 0.482715819046513 Functional Loss - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47673152 chr19:47673154 nonsynonymous SNV 0.189 1 23 hm5C_associated_SNPs_68636 0 0 1 0 2 SAE1 chr19:47673075 3'AG 47673075 Downstream 80bp
chr19 47673154 47673154 1 + C T UCEC 47673152 + 47673132 47673172 41 GCAAAGGCTGCTCTGAAGCGCACGACCTCCGACTACTTTCT GCAAAGGCTGCTCTGAAGCGCATGACCTCCGACTACTTTCT < 41bp 0.786016034022168 0.544658124498911 0.10877618 0.20520163 prediction 0.482715819046513 Functional Loss - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47673152 chr19:47673154 nonsynonymous SNV 0.189 1 23 hm5C_associated_SNPs_68636 0 0 1 0 2 SAE1 chr19:47673180 5'GT 47673180 Upstream 27bp
chr21 42813713 42813713 1 + C T SKCM 42813711 + 42813691 42813731 41 TTGTGGACGTGGTGCGGAACCTCGTGTTCCACCTGAAGAAG TTGTGGACGTGGTGCGGAACCTTGTGTTCCACCTGAAGAAG < 41bp 0.840952496733481 0.599598387250287 0.1092594 0.071244925 prediction 0.482708218966387 Functional Loss - MX1 ENSG00000157601 CDS Human protein_coding chr21:42813711 chr21:42813713 synonymous SNV . 0 23 hm5C_associated_SNPs_68638 0 0 0 0 1 MX1 chr21:42813643 3'AG 42813643 Downstream 71bp
chr12 108603974 108603974 1 + G C HNSC 108603973 + 108603953 108603993 41 ATCCAGGCGACGAACGTGAGCGAGGCAGAGTGCGACATGGA ATCCAGGCGACGAACGTGAGCCAGGCAGAGTGCGACATGGA < 41bp 0.741353962283309 0.414146548123052 0.69005775 0.27616012 prediction 0.482707924566617 Functional Loss - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108603973 chr12:108603974 nonsynonymous SNV 0.840 1 22 hm5C_associated_SNPs_68639 0 0 0 0 1 WSCD2 chr12:108603898 3'AG 108603898 Downstream 77bp
chr12 108603977 108603977 1 + G C LUAD 108603973 + 108603953 108603993 41 ATCCAGGCGACGAACGTGAGCGAGGCAGAGTGCGACATGGA ATCCAGGCGACGAACGTGAGCGAGCCAGAGTGCGACATGGA < 41bp 0.741353962283309 0.446857072395222 0.69005775 0.52728784 prediction 0.482707924566617 Functional Loss - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108603973 chr12:108603977 nonsynonymous SNV 0.660 0 25 hm5C_associated_SNPs_68640 0 0 0 0 1 WSCD2 chr12:108603898 3'AG 108603898 Downstream 80bp
chr5 38370470 38370470 1 + C T COAD 38370468 + 38370448 38370488 41 ACTCCATGGTTATCAAGGGCCTCGATCCAGATACCAACTAC ACTCCATGGTTATCAAGGGCCTTGATCCAGATACCAACTAC < 41bp 0.741352208608442 0.443078559650634 0.23878437 0.042337835 prediction 0.482704417216884 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38370468 chr5:38370470 synonymous SNV . 0 23 hm5C_associated_SNPs_68641 0 0 0 0 2 EGFLAM chr5:38370398 3'AG 38370398 Downstream 73bp
chr5 38370470 38370470 1 + C T COAD 38370468 + 38370448 38370488 41 ACTCCATGGTTATCAAGGGCCTCGATCCAGATACCAACTAC ACTCCATGGTTATCAAGGGCCTTGATCCAGATACCAACTAC < 41bp 0.741352208608442 0.443078559650634 0.23878437 0.042337835 prediction 0.482704417216884 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38370468 chr5:38370470 synonymous SNV . 0 23 hm5C_associated_SNPs_68641 0 0 0 0 2 EGFLAM chr5:38370564 5'GT 38370564 Upstream 95bp
chr5 149915384 149915384 1 + G A UCEC 149915381 + 149915361 149915401 41 TGGAGCATCCGCGTGACCAGCACGGAGGAGTACCCCCACCT TGGAGCATCCGCGTGACCAGCACAGAGGAGTACCCCCACCT < 41bp 0.758755213535472 0.517404923366684 0.8608589 0.30828422 prediction 0.482700580337576 Functional Loss - NDST1 ENSG00000070614 CDS Human protein_coding chr5:149915381 chr5:149915384 synonymous SNV . 0 24 hm5C_associated_SNPs_68642 0 0 0 0 1 NDST1 chr5:149915447 5'GT 149915447 Upstream 64bp
chr17 8157564 8157564 1 + C T SKCM 8157562 + 8157542 8157582 41 CTTACTGCTGGATGATGTTGCTCGGGAGTCCTGGCTCCTTC CTTACTGCTGGATGATGTTGCTTGGGAGTCCTGGCTCCTTC < 41bp 0.810252937464036 0.568908448740713 0.29787415 0.23456213 prediction 0.482688977446645 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8157562 chr17:8157564 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_68643 0 0 1 0 2 PFAS chr17:8157484 3'AG 8157484 Downstream 81bp
chr17 8157564 8157564 1 + C T SKCM 8157562 + 8157542 8157582 41 CTTACTGCTGGATGATGTTGCTCGGGAGTCCTGGCTCCTTC CTTACTGCTGGATGATGTTGCTTGGGAGTCCTGGCTCCTTC < 41bp 0.810252937464036 0.568908448740713 0.29787415 0.23456213 prediction 0.482688977446645 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8157562 chr17:8157564 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_68643 0 0 1 0 2 PFAS chr17:8157619 5'GT 8157619 Upstream 56bp
chr1 150054883 150054883 1 + A C BRCA 150054879 + 150054859 150054899 41 GACAGTGGTTGGAGAACTGTCTCGATTGGTCAGTGAACGGA GACAGTGGTTGGAGAACTGTCTCGCTTGGTCAGTGAACGGA < 41bp 0.937260238865301 0.695917818687705 0.8706011 0.08737534 prediction 0.482684840355191 Functional Loss - VPS45 ENSG00000136631 CDS Human protein_coding chr1:150054879 chr1:150054883 synonymous SNV . 0 25 hm5C_associated_SNPs_68644 0 0 1 0 2 VPS45 chr1:150054800 3'AG 150054800 Downstream 84bp
chr1 150054883 150054883 1 + A C BRCA 150054879 + 150054859 150054899 41 GACAGTGGTTGGAGAACTGTCTCGATTGGTCAGTGAACGGA GACAGTGGTTGGAGAACTGTCTCGCTTGGTCAGTGAACGGA < 41bp 0.937260238865301 0.695917818687705 0.8706011 0.08737534 prediction 0.482684840355191 Functional Loss - VPS45 ENSG00000136631 CDS Human protein_coding chr1:150054879 chr1:150054883 synonymous SNV . 0 25 hm5C_associated_SNPs_68644 0 0 1 0 2 VPS45 chr1:150054967 5'GT 150054967 Upstream 85bp
chr19 54445360 54445360 1 + C T UCEC 54445358 + 54445338 54445378 41 GAGGAGATGTACCGTCCACACCCGGCCTTCTACCGCCCGCG GAGGAGATGTACCGTCCACACCTGGCCTTCTACCGCCCGCG < 41bp 0.741341899049404 0.496034616718461 0.48761478 0.5496329 prediction 0.482683798098809 Functional Loss - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54445358 chr19:54445360 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_68645 0 0 0 0 1 CACNG7 chr19:54445290 3'AG 54445290 Downstream 71bp
chr22 40366930 40366930 1 + C T SKCM 40366928 + 40366908 40366948 41 GCGAGTGCGGTGGGCCCGGGCGCTGTATGACTTTGAGGCCC GCGAGTGCGGTGGGCCCGGGCGTTGTATGACTTTGAGGCCC < 41bp 0.773864964200866 0.532523581476494 0.18030462 0.21828142 prediction 0.482682765448745 Functional Loss - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40366928 chr22:40366930 synonymous SNV . 0 23 hm5C_associated_SNPs_68646 0 0 0 0 1 GRAP2 chr22:40366909 3'AG 40366909 Downstream 22bp
chr2 98351166 98351166 1 + G T HNSC 98351164 + 98351144 98351184 41 TCAGTGCGCCAGGGCGTGTACCGCATGCGCAAGTATGGCCG TCAGTGCGCCAGGGCGTGTACCTCATGCGCAAGTATGGCCG < 41bp 0.741334300278213 0.394417663061369 0.6944165 0.2815275 prediction 0.482668600556426 Functional Loss - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98351164 chr2:98351166 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_68648 0 0 0 0 1 ZAP70 chr2:98351175 5'GT 98351175 Upstream 10bp
chr17 7339251 7339251 1 + C T UCEC 7339249 + 7339229 7339269 41 CCCGCCGCCCCCGGCCCCAGCTCGGCCGCTCACGGACATCG CCCGCCGCCCCCGGCCCCAGCTTGGCCGCTCACGGACATCG < 41bp 0.752951680822633 0.511620343391298 0.2205962 0.12119359 prediction 0.48266267486267 Functional Loss - TMEM102 ENSG00000181284 CDS Human processed_transcript chr17:7339249 chr17:7339251 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_68649 0 0 0 0 1 TMEM102 chr17:7339172 3'AG 7339172 Downstream 80bp
chr3 127327330 127327330 1 + G A STAD 127327327 + 127327307 127327347 41 ACGCCATTCTCCTCGCAGATCTGGTGGACAGCTGCAAGCCA ACGCCATTCTCCTCGCAGATCTGATGGACAGCTGCAAGCCA < 41bp 0.761920926422605 0.520591713113498 0.26531714 0.17687002 prediction 0.482658426618215 Functional Loss - MCM2 ENSG00000073111 CDS Human protein_coding chr3:127327327 chr3:127327330 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_68650 0 0 1 0 1 MCM2 chr3:127327359 5'GT 127327359 Upstream 30bp
chr10 104161038 104161038 1 + C T ESCA 104161036 + 104161016 104161056 41 TGAAGGGCCTGAGAAGGACACCCGAAGCAGCTTCCGGGGCC TGAAGGGCCTGAGAAGGACACCTGAAGCAGCTTCCGGGGCC < 41bp 0.741329210525573 0.466838804049297 0.38622564 0.38007998 prediction 0.482658421051145 Functional Loss - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104161036 chr10:104161038 stopgain 0.104 0 23 hm5C_associated_SNPs_68651 0 0 1 0 1 NFKB2 chr10:104161088 5'GT 104161088 Upstream 51bp
chr11 65822751 65822751 1 + G T COAD 65822749 + 65822729 65822769 41 GAAGTTGGCTCAGCAGCAGGCGGCATTGCTGATGCAGCAGG GAAGTTGGCTCAGCAGCAGGCGTCATTGCTGATGCAGCAGG < 41bp 0.892868228876448 0.651540215142371 0.2998004 0.1462723 prediction 0.482656027468154 Functional Loss - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65822749 chr11:65822751 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_68652 0 0 1 0 1 SF3B2 chr11:65822786 5'GT 65822786 Upstream 36bp
chr1 148932916 148932916 1 + G T LUSC 148932914 + 148932894 148932934 41 TCTGCGGCCAAGACTCCGTCCTGCAAGGTAAGGTCCCCTCC TCTGCGGCCAAGACTCCGTCCTTCAAGGTAAGGTCCCCTCC < 41bp 0.884589910036313 0.643266496850154 0.5138472 0.40850538 prediction 0.482646826372319 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932914 chr1:148932916 . . 0 23 hm5C_associated_SNPs_68655 0 0 0 2 1 LOC645166 chr1:148932920 5'GT 148932920 Upstream 5bp
chr1 45243437 45243437 1 + G T OV 45243435 + 45243415 45243455 41 AGTCCCACTATGCGCTGCCCCTGGGCCGCAAGAAGGGAGCC AGTCCCACTATGCGCTGCCCCTTGGCCGCAAGAAGGGAGCC < 41bp 0.897653560126621 0.656337698369659 0.17245448 0.020697385 prediction 0.482631723513923 Functional Loss - RPS8 ENSG00000142937 CDS Human protein_coding chr1:45243435 chr1:45243437 synonymous SNV . 0 23 hm5C_associated_SNPs_68658 0 0 1 0 1 RPS8 chr1:45243461 5'GT 45243461 Upstream 25bp
chr1 205031660 205031660 1 + C T UCEC 205031658 + 205031638 205031678 41 AGTGTGTGGCAGAGAATAAGCACGGTACCATCTACGCCAGC AGTGTGTGGCAGAGAATAAGCATGGTACCATCTACGCCAGC < 41bp 0.791118010922959 0.549802667430444 0.85401225 0.8564764 prediction 0.48263068698503 Functional Loss - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205031658 chr1:205031660 synonymous SNV . 0 23 hm5C_associated_SNPs_68659 0 0 0 0 2 CNTN2 chr1:205031568 3'AG 205031568 Downstream 93bp
chr1 205031660 205031660 1 + C T UCEC 205031658 + 205031638 205031678 41 AGTGTGTGGCAGAGAATAAGCACGGTACCATCTACGCCAGC AGTGTGTGGCAGAGAATAAGCATGGTACCATCTACGCCAGC < 41bp 0.791118010922959 0.549802667430444 0.85401225 0.8564764 prediction 0.48263068698503 Functional Loss - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205031658 chr1:205031660 synonymous SNV . 0 23 hm5C_associated_SNPs_68659 0 0 0 0 2 CNTN2 chr1:205031697 5'GT 205031697 Upstream 38bp
chr10 101120627 101120627 1 + G T LUSC 101120624 + 101120604 101120644 41 AAAAGCAGAGGGTCCCGCAACGGGAGCGGAAGCGGCATGAC AAAAGCAGAGGGTCCCGCAACGGTAGCGGAAGCGGCATGAC < 41bp 0.923956665106886 0.682641698578058 0.8309155 0.31314957 prediction 0.482629933057657 Functional Loss - CNNM1 ENSG00000119946 CDS Human protein_coding chr10:101120624 chr10:101120627 stopgain 0.998 1 24 hm5C_associated_SNPs_68660 0 0 0 0 1 CNNM1 chr10:101120592 3'AG 101120592 Downstream 36bp
chr22 31521861 31521861 1 + G A SKCM 31521858 + 31521838 31521878 41 AAGGCTTGGCACACAGAGTACAGGGCCTGGCAGGTGCCTGA AAGGCTTGGCACACAGAGTACAGAGCCTGGCAGGTGCCTGA < 41bp 0.750316625488713 0.509002383015823 0.57240444 0.29379547 prediction 0.482628484945779 Functional Loss - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31521858 chr22:31521861 nonsynonymous SNV 0.706 2 24 hm5C_associated_SNPs_68661 0 0 0 0 1 INPP5J chr22:31521819 3'AG 31521819 Downstream 43bp
chr7 123254623 123254623 1 + G T COAD 123254620 + 123254600 123254640 41 ATGATATTCAGCTAAGTATTCAAGAATCCATTGAAGCCAGC ATGATATTCAGCTAAGTATTCAATAATCCATTGAAGCCAGC < 41bp 0.741311787802075 0.367612501098377 0.384139 0.22042263 prediction 0.48262357560415 Functional Loss - ASB15 ENSG00000146809 CDS Human antisense chr7:123254620 chr7:123254623 stopgain 1.000 1 24 hm5C_associated_SNPs_68664 0 0 0 0 2 LOC102724555 chr7:123254555 3'AG 123254555 Downstream 69bp
chr7 123254623 123254623 1 + G T COAD 123254620 + 123254600 123254640 41 ATGATATTCAGCTAAGTATTCAAGAATCCATTGAAGCCAGC ATGATATTCAGCTAAGTATTCAATAATCCATTGAAGCCAGC < 41bp 0.741311787802075 0.367612501098377 0.384139 0.22042263 prediction 0.48262357560415 Functional Loss - ASB15 ENSG00000146809 CDS Human protein_coding chr7:123254620 chr7:123254623 stopgain 1.000 1 24 hm5C_associated_SNPs_68664 0 0 0 0 2 ASB15 chr7:123254663 5'GT 123254663 Upstream 41bp
chr1 36557540 36557540 1 + C T UCEC 36557538 + 36557518 36557558 41 GGCTCTCGGCCCAGCTGACACACGCCTCCTCCCTGGGTTAC GGCTCTCGGCCCAGCTGACACATGCCTCCTCCCTGGGTTAC < 41bp 0.786975087020248 0.545665275234067 0.41125458 0.45526758 prediction 0.482619623572364 Functional Loss - ADPRHL2 ENSG00000116863 CDS Human protein_coding chr1:36557538 chr1:36557540 synonymous SNV . 0 23 hm5C_associated_SNPs_68665 0 0 1 0 1 ADPRHL2 chr1:36557511 3'AG 36557511 Downstream 30bp
chr1 47283847 47283847 1 + C T UCEC 47283845 + 47283825 47283865 41 CCACTGAGAATGCATCCAAACGCCATCCCTTTGCCTTTATG CCACTGAGAATGCATCCAAACGTCATCCCTTTGCCTTTATG < 41bp 0.741301793358211 0.452864891434272 0.08890733 0.027010143 prediction 0.482603586716421 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47283845 chr1:47283847 synonymous SNV . 0 23 hm5C_associated_SNPs_68666 0 0 0 0 2 CYP4B1 chr1:47283803 3'AG 47283803 Downstream 45bp
chr1 47283847 47283847 1 + C T UCEC 47283845 + 47283825 47283865 41 CCACTGAGAATGCATCCAAACGCCATCCCTTTGCCTTTATG CCACTGAGAATGCATCCAAACGTCATCCCTTTGCCTTTATG < 41bp 0.741301793358211 0.452864891434272 0.08890733 0.027010143 prediction 0.482603586716421 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47283845 chr1:47283847 synonymous SNV . 0 23 hm5C_associated_SNPs_68666 0 0 0 0 2 CYP4B1 chr1:47283885 5'GT 47283885 Upstream 39bp
chr19 55477795 55477795 1 + A C rs537622431 55477791 + 55477771 55477811 41 CTTATTAGAGCTTTCTCAACCTGCAGCCCTCATCTCCGCCG CTTATTAGAGCTTTCTCAACCTGCCGCCCTCATCTCCGCCG < 41bp 0.741301285306601 0.422412008005363 0.10960516 0.055658996 prediction 0.482602570613203 Functional Loss - NLRP2 ENSG00000022556 UTR5 Human protein_coding chr19:55477791 chr19:55477795 . . 0 25 hm5C_associated_SNPs_68668 0 0 0 0 1 NLRP2 chr19:55477835 5'GT 55477835 Upstream 41bp
chr7 44151566 44151566 1 + C T COAD 44151564 + 44151544 44151584 41 AGAGTACCGCGATGGGAACCCACGTGTGCGCAGCCTGGTGC AGAGTACCGCGATGGGAACCCATGTGTGCGCAGCCTGGTGC < 41bp 0.798909113189668 0.557609382178692 0.4554583 0.40487772 prediction 0.482599462021953 Functional Loss - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44151564 chr7:44151566 nonsynonymous SNV 0.076 3 23 hm5C_associated_SNPs_68669 0 0 0 0 1 AEBP1 chr7:44151649 5'GT 44151649 Upstream 84bp
chr3 52518594 52518594 1 + G A UCEC 52518591 + 52518571 52518611 41 CGTCCACTGACAGTCTGACTCCCGAGCACCAGCCCATTGCC CGTCCACTGACAGTCTGACTCCCAAGCACCAGCCCATTGCC < 41bp 0.754721887330868 0.513426905075946 0.44689247 0.3055203 prediction 0.482589964509843 Functional Loss - NISCH ENSG00000010322 CDS Human protein_coding chr3:52518591 chr3:52518594 nonsynonymous SNV 0.887 0 24 hm5C_associated_SNPs_68670 0 0 1 0 2 NISCH chr3:52518529 3'AG 52518529 Downstream 66bp
chr3 52518594 52518594 1 + G A UCEC 52518591 + 52518571 52518611 41 CGTCCACTGACAGTCTGACTCCCGAGCACCAGCCCATTGCC CGTCCACTGACAGTCTGACTCCCAAGCACCAGCCCATTGCC < 41bp 0.754721887330868 0.513426905075946 0.44689247 0.3055203 prediction 0.482589964509843 Functional Loss - NISCH ENSG00000010322 CDS Human protein_coding chr3:52518591 chr3:52518594 nonsynonymous SNV 0.887 0 24 hm5C_associated_SNPs_68670 0 0 1 0 2 NISCH chr3:52518653 5'GT 52518653 Upstream 60bp
chr22 45680870 45680870 1 + G C rs116162068 45680869 + 45680849 45680889 41 GCTCGCTGGACCGCCCGCCCCGCGCTCTGGCGGCTCCTCCC GCTCGCTGGACCGCCCGCCCCCCGCTCTGGCGGCTCCTCCC < 41bp 0.836579070632262 0.595290269028901 0.6158497 0.25840354 prediction 0.482577603206722 Functional Loss - UPK3A ENSG00000100373 UTR5 Human protein_coding chr22:45680869 chr22:45680870 . . 0 22 hm5C_associated_SNPs_68672 1 0 0 0 1 UPK3A chr22:45680946 5'GT 45680946 Upstream 77bp
chr3 46937345 46937345 1 + G A rs41290646 46937342 + 46937322 46937362 41 GGAGGACAAGGAGGCACCCACTGGCAGCAGGTACCGAGGTA GGAGGACAAGGAGGCACCCACTGACAGCAGGTACCGAGGTA < 41bp 0.741286889478888 0.488657684263382 0.37720853 0.14753267 prediction 0.482573778957775 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46937342 chr3:46937345 nonsynonymous SNV 0.964 0 24 hm5C_associated_SNPs_68673 2 0 0 0 1 PTH1R chr3:46937359 5'GT 46937359 Upstream 15bp
chr3 46937344 46937344 1 + G T LIHC 46937342 + 46937322 46937362 41 GGAGGACAAGGAGGCACCCACTGGCAGCAGGTACCGAGGTA GGAGGACAAGGAGGCACCCACTTGCAGCAGGTACCGAGGTA < 41bp 0.741286889478888 0.393462075671797 0.37720853 0.105764836 prediction 0.482573778957775 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46937342 chr3:46937344 nonsynonymous SNV 0.923 2 23 hm5C_associated_SNPs_68674 0 0 0 0 1 PTH1R chr3:46937359 5'GT 46937359 Upstream 16bp
chr21 45833800 45833800 1 + A T LIHC 45833796 + 45833776 45833816 41 GTGAACTTCAACCCGGAGCACTGCAGCCCCAATGGCACCGA GTGAACTTCAACCCGGAGCACTGCTGCCCCAATGGCACCGA < 41bp 0.741285809336485 0.407167738172332 0.7537732 0.3752669 prediction 0.48257161867297 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45833796 chr21:45833800 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_68675 0 0 0 0 1 TRPM2 chr21:45833774 3'AG 45833774 Downstream 27bp
chr13 113887612 113887612 1 + A C PRAD 113887608 + 113887588 113887628 41 AGGAGCGGCGAGGCCGTGGACCGGAGCCTGTTGCGGAGCCT AGGAGCGGCGAGGCCGTGGACCGGCGCCTGTTGCGGAGCCT < 41bp 0.927177313222905 0.685895711656431 0.899326 0.8789543 prediction 0.482563203132949 Functional Loss - CUL4A ENSG00000139842 CDS Human protein_coding chr13:113887608 chr13:113887612 nonsynonymous SNV 0.212 1 25 hm5C_associated_SNPs_68677 0 0 1 0 1 CUL4A chr13:113887653 5'GT 113887653 Upstream 42bp
chr11 20409612 20409612 1 + G T LUAD 20409610 + 20409590 20409630 41 GGAGGACCTGCCAGAACTGTCGGACAGCGGGGACGAGGCCG GGAGGACCTGCCAGAACTGTCGTACAGCGGGGACGAGGCCG < 41bp 0.741279162539437 0.386095920673302 0.8845933 0.3991548 prediction 0.482558325078874 Functional Loss - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20409610 chr11:20409612 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_68681 0 0 1 0 2 PRMT3 chr11:20409565 3'AG 20409565 Downstream 48bp
chr11 20409612 20409612 1 + G T LUAD 20409610 + 20409590 20409630 41 GGAGGACCTGCCAGAACTGTCGGACAGCGGGGACGAGGCCG GGAGGACCTGCCAGAACTGTCGTACAGCGGGGACGAGGCCG < 41bp 0.741279162539437 0.386095920673302 0.8845933 0.3991548 prediction 0.482558325078874 Functional Loss - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20409610 chr11:20409612 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_68681 0 0 1 0 2 PRMT3 chr11:20409700 5'GT 20409700 Upstream 89bp
chr9 130913979 130913979 1 + C T SARC 130913977 + 130913957 130913997 41 GGTTGCCAGCCCGGCGAGTTCACGCTGGGCAACATTAAGAG GGTTGCCAGCCCGGCGAGTTCATGCTGGGCAACATTAAGAG < 41bp 0.741275968185956 0.490565144269644 0.23811147 0.26297772 prediction 0.482551936371911 Functional Loss - LCN2 ENSG00000148346 CDS Human protein_coding chr9:130913977 chr9:130913979 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_68682 0 0 0 0 1 LCN2 chr9:130913917 3'AG 130913917 Downstream 63bp
chr9 130913980 130913980 1 + G A STAD 130913977 + 130913957 130913997 41 GGTTGCCAGCCCGGCGAGTTCACGCTGGGCAACATTAAGAG GGTTGCCAGCCCGGCGAGTTCACACTGGGCAACATTAAGAG < 41bp 0.741275968185956 0.497308339365702 0.23811147 0.173174 prediction 0.482551936371911 Functional Loss - LCN2 ENSG00000148346 CDS Human protein_coding chr9:130913977 chr9:130913980 synonymous SNV . 0 24 hm5C_associated_SNPs_68683 0 0 0 0 1 LCN2 chr9:130913917 3'AG 130913917 Downstream 64bp
chr1 2421246 2421246 1 + G T UCEC 2421243 + 2421223 2421263 41 AGCGAGGATGCGGAGGAAGGCGAGGTGTCTGATGAGGACAG AGCGAGGATGCGGAGGAAGGCGATGTGTCTGATGAGGACAG < 41bp 0.741267015664727 0.343249679010634 0.8955822 0.2932606 prediction 0.482534031329454 Functional Loss - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2421243 chr1:2421246 nonsynonymous SNV 0.952 0 24 hm5C_associated_SNPs_68687 0 0 0 0 2 PLCH2 chr1:2421199 3'AG 2421199 Downstream 48bp
chr1 2421246 2421246 1 + G T UCEC 2421243 + 2421223 2421263 41 AGCGAGGATGCGGAGGAAGGCGAGGTGTCTGATGAGGACAG AGCGAGGATGCGGAGGAAGGCGATGTGTCTGATGAGGACAG < 41bp 0.741267015664727 0.343249679010634 0.8955822 0.2932606 prediction 0.482534031329454 Functional Loss - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2421243 chr1:2421246 nonsynonymous SNV 0.952 0 24 hm5C_associated_SNPs_68687 0 0 0 0 2 PLCH2 chr1:2421306 5'GT 2421306 Upstream 61bp
chr12 121009031 121009031 1 + G T UCEC 121009029 + 121009009 121009049 41 CTCTGTCACCCACTGCCAGTCAGGGCAGTCCCTCATTCTGC CTCTGTCACCCACTGCCAGTCATGGCAGTCCCTCATTCTGC < 41bp 0.741262033757422 0.380979998894348 0.91689706 0.3069244 prediction 0.482524067514843 Functional Loss - RNF10 ENSG00000022840 CDS Human protein_coding chr12:121009029 chr12:121009031 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_68689 0 0 1 0 2 RNF10 chr12:121008994 3'AG 121008994 Downstream 38bp
chr12 121009031 121009031 1 + G T UCEC 121009029 + 121009009 121009049 41 CTCTGTCACCCACTGCCAGTCAGGGCAGTCCCTCATTCTGC CTCTGTCACCCACTGCCAGTCATGGCAGTCCCTCATTCTGC < 41bp 0.741262033757422 0.380979998894348 0.91689706 0.3069244 prediction 0.482524067514843 Functional Loss - RNF10 ENSG00000022840 CDS Human protein_coding chr12:121009029 chr12:121009031 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_68689 0 0 1 0 2 RNF10 chr12:121009094 5'GT 121009094 Upstream 64bp
chr17 48618328 48618328 1 + C T rs147653757 48618326 + 48618306 48618346 41 GTGCTGCCTGCTGGGCCCCCCACCACAGACCCCTGGGCCCT GTGCTGCCTGCTGGGCCCCCCATCACAGACCCCTGGGCCCT < 41bp 0.741259852332298 0.467110970080751 0.33350918 0.18882227 prediction 0.482519704664597 Functional Loss - EPN3 ENSG00000049283 CDS Human protein_coding chr17:48618326 chr17:48618328 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_68690 0 0 0 0 1 EPN3 chr17:48618423 5'GT 48618423 Upstream 96bp
chr3 107520042 107520042 1 + G C HNSC 107520038 + 107520018 107520058 41 CAACACCGAGGTCGGGGAGACGCGGAGCAGTACTCCAGAAA CAACACCGAGGTCGGGGAGACGCGCAGCAGTACTCCAGAAA < 41bp 0.741256321400084 0.470456634049027 0.89882374 0.25192344 prediction 0.482512642800168 Functional Loss - BBX ENSG00000114439 CDS Human protein_coding chr3:107520038 chr3:107520042 nonsynonymous SNV 0.935 2 25 hm5C_associated_SNPs_68691 0 0 1 0 1 BBX chr3:107520128 5'GT 107520128 Upstream 87bp
chr7 128370052 128370052 1 + C T LGG 128370050 + 128370030 128370070 41 GAGTGGGAAAGAGAGAACCCCTCCGGCCTGCAGCCCCTCTC GAGTGGGAAAGAGAGAACCCCTTCGGCCTGCAGCCCCTCTC < 41bp 0.821226157645837 0.579990291451004 0.3930238 0.08490035 prediction 0.482471732389666 Functional Loss - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128370050 chr7:128370052 nonsynonymous SNV 0.404 4 23 hm5C_associated_SNPs_68697 0 0 0 0 2 FAM71F1 chr7:128369956 3'AG 128369956 Downstream 97bp
chr7 128370052 128370052 1 + C T LGG 128370050 + 128370030 128370070 41 GAGTGGGAAAGAGAGAACCCCTCCGGCCTGCAGCCCCTCTC GAGTGGGAAAGAGAGAACCCCTTCGGCCTGCAGCCCCTCTC < 41bp 0.821226157645837 0.579990291451004 0.3930238 0.08490035 prediction 0.482471732389666 Functional Loss - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128370050 chr7:128370052 nonsynonymous SNV 0.404 4 23 hm5C_associated_SNPs_68697 0 0 0 0 2 FAM71F1 chr7:128370123 5'GT 128370123 Upstream 72bp
chr11 65745041 65745041 1 + G T LUAD 65745039 + 65745019 65745059 41 CCCCTCCATCCCTAGGGCTGCTGGAGACCACAGTGCAGAAG CCCCTCCATCCCTAGGGCTGCTTGAGACCACAGTGCAGAAG < 41bp 0.741224089038058 0.39633955811332 0.13850516 0.04743725 prediction 0.482448178076117 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65745039 chr11:65745041 synonymous SNV . 0 23 hm5C_associated_SNPs_68701 0 0 1 0 2 SART1 chr11:65745034 3'AG 65745034 Downstream 8bp
chr11 65745041 65745041 1 + G T LUAD 65745039 + 65745019 65745059 41 CCCCTCCATCCCTAGGGCTGCTGGAGACCACAGTGCAGAAG CCCCTCCATCCCTAGGGCTGCTTGAGACCACAGTGCAGAAG < 41bp 0.741224089038058 0.39633955811332 0.13850516 0.04743725 prediction 0.482448178076117 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65745039 chr11:65745041 synonymous SNV . 0 23 hm5C_associated_SNPs_68701 0 0 1 0 2 SART1 chr11:65745124 5'GT 65745124 Upstream 84bp
chr1 192150508 192150508 1 + A T LUAD 192150504 + 192150484 192150524 41 TGGATAGCCTGTGAAGATTTCAAGAAAAGCAAGGGACCTCA TGGATAGCCTGTGAAGATTTCAAGTAAAGCAAGGGACCTCA < 41bp 0.846766167288273 0.605545931440446 0.21240133 0.11507404 prediction 0.482440471695655 Functional Loss - RGS18 ENSG00000150681 CDS Human protein_coding chr1:192150504 chr1:192150508 stopgain 0.997 1 25 hm5C_associated_SNPs_68703 0 0 0 0 2 RGS18 chr1:192150422 3'AG 192150422 Downstream 87bp
chr1 192150508 192150508 1 + A T LUAD 192150504 + 192150484 192150524 41 TGGATAGCCTGTGAAGATTTCAAGAAAAGCAAGGGACCTCA TGGATAGCCTGTGAAGATTTCAAGTAAAGCAAGGGACCTCA < 41bp 0.846766167288273 0.605545931440446 0.21240133 0.11507404 prediction 0.482440471695655 Functional Loss - RGS18 ENSG00000150681 CDS Human protein_coding chr1:192150504 chr1:192150508 stopgain 0.997 1 25 hm5C_associated_SNPs_68703 0 0 0 0 2 RGS18 chr1:192150588 5'GT 192150588 Upstream 81bp
chr14 24619877 24619877 1 + C T PAAD 24619875 + 24619855 24619895 41 ATTCACTGTACCTTCTGCAACTCGAGCCCTGGCTGGGTGTG ATTCACTGTACCTTCTGCAACTTGAGCCCTGGCTGGGTGTG < 41bp 0.741216936604296 0.453546764426783 0.09983462 0.09463388 prediction 0.482433873208592 Functional Loss - RNF31 ENSG00000092098 CDS Human protein_coding chr14:24619875 chr14:24619877 nonsynonymous SNV 0.982 2 23 hm5C_associated_SNPs_68704 0 0 1 0 1 RNF31 chr14:24619807 3'AG 24619807 Downstream 71bp
chrX 69249373 69249373 1 + A T OV 69249369 + 69249349 69249389 41 TGCAGGTGCTGCTGATAAAGCTGGAACTCGAGAAAACCAGG TGCAGGTGCTGCTGATAAAGCTGGTACTCGAGAAAACCAGG < 41bp 0.741212361178313 0.421939727293474 0.19153002 0.31543398 prediction 0.482424722356625 Functional Loss - EDA ENSG00000158813 CDS Human protein_coding chrX:69249369 chrX:69249373 synonymous SNV . 0 25 hm5C_associated_SNPs_68706 0 0 0 0 2 EDA chrX:69249354 3'AG 69249354 Downstream 20bp
chrX 69249373 69249373 1 + A T OV 69249369 + 69249349 69249389 41 TGCAGGTGCTGCTGATAAAGCTGGAACTCGAGAAAACCAGG TGCAGGTGCTGCTGATAAAGCTGGTACTCGAGAAAACCAGG < 41bp 0.741212361178313 0.421939727293474 0.19153002 0.31543398 prediction 0.482424722356625 Functional Loss - EDA ENSG00000158813 CDS Human protein_coding chrX:69249369 chrX:69249373 synonymous SNV . 0 25 hm5C_associated_SNPs_68706 0 0 0 0 2 EDA chrX:69249388 5'GT 69249388 Upstream 16bp
chr16 67688691 67688691 1 + T C STAD 67688690 + 67688670 67688710 41 TCTGTCCCTAGCGGCGGCCCCTGGAGCGGGGAGAAACAGAA TCTGTCCCTAGCGGCGGCCCCCGGAGCGGGGAGAAACAGAA < 41bp 0.741209992927703 0.488037634698153 0.91678476 0.9242421 prediction 0.482419985855405 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67688690 chr16:67688691 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_68709 0 0 0 0 1 CARMIL2 chr16:67688681 3'AG 67688681 Downstream 11bp
chr3 186459359 186459359 1 + C T UCEC 186459357 + 186459337 186459377 41 TTTTTCACCTTTCCGATCATCACGAATAGGGGAAATAAAAG TTTTTCACCTTTCCGATCATCATGAATAGGGGAAATAAAAG < 41bp 0.741200777434511 0.46986792193168 0.18450528 0.2313019 prediction 0.482401554869023 Functional Loss - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186459357 chr3:186459359 stopgain 0.001 0 23 hm5C_associated_SNPs_68713 0 0 0 0 2 KNG1 chr3:186459311 3'AG 186459311 Downstream 49bp
chr3 186459359 186459359 1 + C T UCEC 186459357 + 186459337 186459377 41 TTTTTCACCTTTCCGATCATCACGAATAGGGGAAATAAAAG TTTTTCACCTTTCCGATCATCATGAATAGGGGAAATAAAAG < 41bp 0.741200777434511 0.46986792193168 0.18450528 0.2313019 prediction 0.482401554869023 Functional Loss - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186459357 chr3:186459359 stopgain 0.001 0 23 hm5C_associated_SNPs_68713 0 0 0 0 2 KNG1 chr3:186459388 5'GT 186459388 Upstream 30bp
chr8 27364421 27364421 1 + G T LUAD 27364419 + 27364399 27364439 41 TGGATGACATCGGGGCTAATCTGAAGCCAGCCCGTGACTTG TGGATGACATCGGGGCTAATCTTAAGCCAGCCCGTGACTTG < 41bp 0.887574768103558 0.646382488195652 0.6982696 0.2780848 prediction 0.482384559815812 Functional Loss - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27364419 chr8:27364421 synonymous SNV . 0 23 hm5C_associated_SNPs_68715 0 0 1 0 2 EPHX2 chr8:27364389 3'AG 27364389 Downstream 33bp
chr8 27364421 27364421 1 + G T LUAD 27364419 + 27364399 27364439 41 TGGATGACATCGGGGCTAATCTGAAGCCAGCCCGTGACTTG TGGATGACATCGGGGCTAATCTTAAGCCAGCCCGTGACTTG < 41bp 0.887574768103558 0.646382488195652 0.6982696 0.2780848 prediction 0.482384559815812 Functional Loss - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27364419 chr8:27364421 synonymous SNV . 0 23 hm5C_associated_SNPs_68715 0 0 1 0 2 EPHX2 chr8:27364511 5'GT 27364511 Upstream 91bp
chr11 63996771 63996771 1 + G A SKCM 63996768 + 63996748 63996788 41 GCCCCTGCTGTTGGGCATCGCCCGAAATGAGACCAGTGCTG GCCCCTGCTGTTGGGCATCGCCCAAAATGAGACCAGTGCTG < 41bp 0.742437378180261 0.501246260022184 0.13330996 0.13008592 prediction 0.482382236316154 Functional Loss - NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63996768 chr11:63996771 nonsynonymous SNV 0.760 1 24 hm5C_associated_SNPs_68716 0 0 0 0 2 NUDT22 chr11:63996719 3'AG 63996719 Downstream 53bp
chr11 63996771 63996771 1 + G A SKCM 63996768 + 63996748 63996788 41 GCCCCTGCTGTTGGGCATCGCCCGAAATGAGACCAGTGCTG GCCCCTGCTGTTGGGCATCGCCCAAAATGAGACCAGTGCTG < 41bp 0.742437378180261 0.501246260022184 0.13330996 0.13008592 prediction 0.482382236316154 Functional Loss - NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63996768 chr11:63996771 nonsynonymous SNV 0.760 1 24 hm5C_associated_SNPs_68716 0 0 0 0 2 NUDT22 chr11:63996816 5'GT 63996816 Upstream 46bp
chr4 56815151 56815151 1 + G T rs376565886 56815149 + 56815129 56815169 41 CGCCGGAGCCCGTGCCTGGACGGAAGGAGCTAGTGGGGGAC CGCCGGAGCCCGTGCCTGGACGTAAGGAGCTAGTGGGGGAC < 41bp 0.85793125118294 0.616742728940054 0.8893484 0.7347427 prediction 0.482377044485772 Functional Loss - CEP135 ENSG00000174799 UTR5 Human protein_coding chr4:56815149 chr4:56815151 . . 0 23 hm5C_associated_SNPs_68717 0 0 1 0 1 CEP135 chr4:56815225 5'GT 56815225 Upstream 75bp
chr3 44692677 44692677 1 + T C SKCM 44692676 + 44692656 44692696 41 GCATCCAGCCAACAAGTGCACTCCGAGAACATCAAAGTCTG GCATCCAGCCAACAAGTGCACCCCGAGAACATCAAAGTCTG < 41bp 0.741187745171932 0.495106394359826 0.14658731 0.08771554 prediction 0.482375490343863 Functional Loss - ZNF35 ENSG00000169981 CDS Human protein_coding chr3:44692676 chr3:44692677 nonsynonymous SNV 0.022 0 22 hm5C_associated_SNPs_68718 0 0 0 0 1 ZNF35 chr3:44692751 5'GT 44692751 Upstream 75bp
chr10 95347055 95347055 1 + G T LUAD 95347052 + 95347032 95347072 41 ACCAGATCCGCGTGTCCCAGCAGGACTTCCGGCTCTTCCGC ACCAGATCCGCGTGTCCCAGCAGTACTTCCGGCTCTTCCGC < 41bp 0.924676602473322 0.683490386071053 0.88630617 0.37141138 prediction 0.482372432804538 Functional Loss - FFAR4 ENSG00000186188 CDS Human protein_coding chr10:95347052 chr10:95347055 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_68719 0 0 0 0 1 FFAR4 chr10:95346977 3'AG 95346977 Downstream 79bp
chr12 113402111 113402111 1 + C T GBM 113402109 + 113402089 113402129 41 GTGAATTTCTCCAGCCCAACCGCCAGTTCCTGGCCCAGGTG GTGAATTTCTCCAGCCCAACCGTCAGTTCCTGGCCCAGGTG < 41bp 0.741172602616842 0.450424367319402 0.89887583 0.22812647 prediction 0.482345205233685 Functional Loss - OAS3 ENSG00000111331 CDS Human protein_coding chr12:113402109 chr12:113402111 synonymous SNV . 0 23 hm5C_associated_SNPs_68722 0 0 0 0 1 OAS3 chr12:113402040 3'AG 113402040 Downstream 72bp
chr4 4393293 4393293 1 + C T UCEC 4393291 + 4393271 4393311 41 GCTGAGTTCACCGTCAGCATCACGGAGGGTGTCACCGAGAG GCTGAGTTCACCGTCAGCATCATGGAGGGTGTCACCGAGAG < 41bp 0.812506626391874 0.571342492110874 0.3945473 0.46102476 prediction 0.482328268561999 Functional Loss - NSG1 ENSG00000168824 CDS Human protein_coding chr4:4393291 chr4:4393293 nonsynonymous SNV 0.847 1 23 hm5C_associated_SNPs_68725 0 0 0 0 2 NSG1 chr4:4393202 3'AG 4393202 Downstream 92bp
chr4 4393293 4393293 1 + C T UCEC 4393291 + 4393271 4393311 41 GCTGAGTTCACCGTCAGCATCACGGAGGGTGTCACCGAGAG GCTGAGTTCACCGTCAGCATCATGGAGGGTGTCACCGAGAG < 41bp 0.812506626391874 0.571342492110874 0.3945473 0.46102476 prediction 0.482328268561999 Functional Loss - NSG1 ENSG00000168824 CDS Human protein_coding chr4:4393291 chr4:4393293 nonsynonymous SNV 0.847 1 23 hm5C_associated_SNPs_68725 0 0 0 0 2 NSG1 chr4:4393318 5'GT 4393318 Upstream 26bp
chr4 74735635 74735635 1 + G T UCEC 74735632 + 74735612 74735652 41 TCCCTCTGCAGAGCCACACTCAAGAATGGGCGGAAAGCTTG TCCCTCTGCAGAGCCACACTCAATAATGGGCGGAAAGCTTG < 41bp 0.91617977752533 0.675015816540111 0.86998063 0.14207903 prediction 0.482327921970439 Functional Loss - CXCL1 ENSG00000163739 CDS Human protein_coding chr4:74735632 chr4:74735635 nonsynonymous SNV 0.359 4 24 hm5C_associated_SNPs_68726 0 0 0 0 2 CXCL1 chr4:74735623 3'AG 74735623 Downstream 13bp
chr4 74735635 74735635 1 + G T UCEC 74735632 + 74735612 74735652 41 TCCCTCTGCAGAGCCACACTCAAGAATGGGCGGAAAGCTTG TCCCTCTGCAGAGCCACACTCAATAATGGGCGGAAAGCTTG < 41bp 0.91617977752533 0.675015816540111 0.86998063 0.14207903 prediction 0.482327921970439 Functional Loss - CXCL1 ENSG00000163739 CDS Human protein_coding chr4:74735632 chr4:74735635 nonsynonymous SNV 0.359 4 24 hm5C_associated_SNPs_68726 0 0 0 0 2 CXCL1 chr4:74735706 5'GT 74735706 Upstream 72bp
chr6 394869 394869 1 + G T LGG 394866 + 394846 394886 41 TCCGAGAAGGCATCGACAAGCCGGACCCTCCCACCTGGAAG TCCGAGAAGGCATCGACAAGCCGTACCCTCCCACCTGGAAG < 41bp 0.741161025929785 0.357102661859055 0.32762855 0.016091347 prediction 0.482322051859569 Functional Loss - IRF4 ENSG00000137265 CDS Human protein_coding chr6:394866 chr6:394869 nonsynonymous SNV 0.796 5 24 hm5C_associated_SNPs_68727 0 0 0 0 1 IRF4 chr6:394821 3'AG 394821 Downstream 49bp
chr6 168440829 168440829 1 + G A rs73042832 168440826 + 168440806 168440846 41 AAGCACCCCACCCTGGTGCACGCGGATTCCTCCAGGTCTCA AAGCACCCCACCCTGGTGCACGCAGATTCCTCCAGGTCTCA < 41bp 0.765462661276094 0.524303589225391 0.36767268 0.14599165 prediction 0.482318144101405 Functional Loss - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168440826 chr6:168440829 synonymous SNV . 0 24 hm5C_associated_SNPs_68729 0 0 0 0 2 KIF25 chr6:168440745 3'AG 168440745 Downstream 85bp
chr6 168440829 168440829 1 + G A rs73042832 168440826 + 168440806 168440846 41 AAGCACCCCACCCTGGTGCACGCGGATTCCTCCAGGTCTCA AAGCACCCCACCCTGGTGCACGCAGATTCCTCCAGGTCTCA < 41bp 0.765462661276094 0.524303589225391 0.36767268 0.14599165 prediction 0.482318144101405 Functional Loss - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168440826 chr6:168440829 synonymous SNV . 0 24 hm5C_associated_SNPs_68729 0 0 0 0 2 KIF25 chr6:168440896 5'GT 168440896 Upstream 68bp
chr21 42688752 42688752 1 + G T rs148108671 42688749 + 42688729 42688769 41 TTCCTGACCCAGGGGCTCCGCTGGCTGCGGTCGCCTGGGAG TTCCTGACCCAGGGGCTCCGCTGTCTGCGGTCGCCTGGGAG < 41bp 0.741155941227494 0.360796107221559 0.5591407 0.33751157 prediction 0.482311882454987 Functional Loss - FAM3B ENSG00000183844 UTR5 Human protein_coding chr21:42688749 chr21:42688752 . . 0 24 hm5C_associated_SNPs_68730 0 0 1 0 1 FAM3B chr21:42688825 5'GT 42688825 Upstream 74bp
chr1 52747474 52747474 1 + G C BLCA 52747473 + 52747453 52747493 41 ATCACTTTGTGCAGCTTTATCGGGATGCTCTGGCAGGTAGG ATCACTTTGTGCAGCTTTATCCGGATGCTCTGGCAGGTAGG < 41bp 0.857880698728339 0.616731032724 0.940065 0.9140987 prediction 0.482299332008679 Functional Loss - ZFYVE9 ENSG00000157077 CDS Human protein_coding chr1:52747473 chr1:52747474 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_68732 0 0 1 0 1 ZFYVE9 chr1:52747488 5'GT 52747488 Upstream 15bp
chr3 11076338 11076338 1 + G T UCEC 11076336 + 11076316 11076356 41 TCTTCCATGGTCCTCATCCCCGGGTACATGGCCTACATGTT TCTTCCATGGTCCTCATCCCCGTGTACATGGCCTACATGTT < 41bp 0.741148915467568 0.385856530881693 0.9004806 0.26112306 prediction 0.482297830935136 Functional Loss - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11076336 chr3:11076338 nonsynonymous SNV 0.958 3 23 hm5C_associated_SNPs_68733 0 0 0 0 1 SLC6A1 chr3:11076384 5'GT 11076384 Upstream 47bp
chr19 57908503 57908503 1 + G A BLCA 57908500 + 57908480 57908520 41 AGGCTCAGAGATTGCTGTACCGTGATGTGATGCTGGAGAAT AGGCTCAGAGATTGCTGTACCGTAATGTGATGCTGGAGAAT < 41bp 0.753272854335634 0.512145986291534 0.3685493 0.11063531 prediction 0.482253736088201 Functional Loss - ZNF548 ENSG00000188785;ENSG00000269533 CDS Human other chr19:57908500 chr19:57908503 nonsynonymous SNV 0.442 0 24 hm5C_associated_SNPs_68735 0 0 0 0 2 ZNF548 chr19:57908416 3'AG 57908416 Downstream 88bp
chr19 57908503 57908503 1 + G A BLCA 57908500 + 57908480 57908520 41 AGGCTCAGAGATTGCTGTACCGTGATGTGATGCTGGAGAAT AGGCTCAGAGATTGCTGTACCGTAATGTGATGCTGGAGAAT < 41bp 0.753272854335634 0.512145986291534 0.3685493 0.11063531 prediction 0.482253736088201 Functional Loss - ZNF548 ENSG00000188785;ENSG00000269533 CDS Human other chr19:57908500 chr19:57908503 nonsynonymous SNV 0.442 0 24 hm5C_associated_SNPs_68735 0 0 0 0 2 ZNF548 chr19:57908542 5'GT 57908542 Upstream 40bp
chr19 16791335 16791335 1 + G A PRAD 16791332 + 16791312 16791352 41 AGATCGCGGTGGGCATCCATCACGCCCATCACCACTACCAC AGATCGCGGTGGGCATCCATCACACCCATCACCACTACCAC < 41bp 0.761027691470062 0.519917868395242 0.80148804 0.31018975 prediction 0.48221964614964 Functional Loss - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16791332 chr19:16791335 nonsynonymous SNV 0.745 4 24 hm5C_associated_SNPs_68739 0 0 1 0 1 TMEM38A chr19:16791392 5'GT 16791392 Upstream 58bp
chr6 74115472 74115472 1 + T C LIHC 74115471 + 74115451 74115491 41 CGACCTATCCCCAATCCTACCTGCACATTTGATGACGCCTT CGACCTATCCCCAATCCTACCCGCACATTTGATGACGCCTT < 41bp 0.787309700754033 0.546201799165913 0.03626299 0.021885097 prediction 0.48221580317624 Functional Loss - DDX43 ENSG00000080007 CDS Human protein_coding chr6:74115471 chr6:74115472 nonsynonymous SNV 0.012 1 22 hm5C_associated_SNPs_68740 0 0 0 0 2 DDX43 chr6:74115402 3'AG 74115402 Downstream 71bp
chr6 74115472 74115472 1 + T C LIHC 74115471 + 74115451 74115491 41 CGACCTATCCCCAATCCTACCTGCACATTTGATGACGCCTT CGACCTATCCCCAATCCTACCCGCACATTTGATGACGCCTT < 41bp 0.787309700754033 0.546201799165913 0.03626299 0.021885097 prediction 0.48221580317624 Functional Loss - DDX43 ENSG00000080007 CDS Human protein_coding chr6:74115471 chr6:74115472 nonsynonymous SNV 0.012 1 22 hm5C_associated_SNPs_68740 0 0 0 0 2 DDX43 chr6:74115558 5'GT 74115558 Upstream 87bp
chr7 23731023 23731023 1 + G T TGCT 23731021 + 23731001 23731041 41 TGATTCAGGTTCCAAGTGTTCAGGATTCCATAGCTGCTTCA TGATTCAGGTTCCAAGTGTTCATGATTCCATAGCTGCTTCA < 41bp 0.888415273334906 0.647322311888589 0.86385006 0.13365805 prediction 0.482185922892633 Functional Loss - FAM221A ENSG00000188732 CDS Human protein_coding chr7:23731021 chr7:23731023 stopgain 0.994 1 23 hm5C_associated_SNPs_68749 0 0 0 0 1 FAM221A chr7:23731009 3'AG 23731009 Downstream 15bp
chr13 37011975 37011975 1 + C T COAD 37011973 + 37011953 37011993 41 ATGAAGTAGACACCGGCACACTCAAGTCAGACCTGCACTTC ATGAAGTAGACACCGGCACACTTAAGTCAGACCTGCACTTC < 41bp 0.826699458086909 0.585607782835378 0.15564021 0.1953404 prediction 0.482183350503062 Functional Loss - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37011973 chr13:37011975 synonymous SNV . 0 23 hm5C_associated_SNPs_68751 0 0 0 0 1 CCNA1 chr13:37012012 5'GT 37012012 Upstream 38bp
chr17 33510508 33510508 1 + G T LUAD 33510505 + 33510485 33510525 41 AAGCTGGTGGTGCTGCTCTGCGGGGAGGATGATGATAAGGT AAGCTGGTGGTGCTGCTCTGCGGTGAGGATGATGATAAGGT < 41bp 0.741090900036209 0.341625308959066 0.8671891 0.3383819 prediction 0.482181800072418 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33510505 chr17:33510508 synonymous SNV . 0 24 hm5C_associated_SNPs_68752 0 0 0 0 2 UNC45B chr17:33510446 3'AG 33510446 Downstream 63bp
chr17 33510508 33510508 1 + G T LUAD 33510505 + 33510485 33510525 41 AAGCTGGTGGTGCTGCTCTGCGGGGAGGATGATGATAAGGT AAGCTGGTGGTGCTGCTCTGCGGTGAGGATGATGATAAGGT < 41bp 0.741090900036209 0.341625308959066 0.8671891 0.3383819 prediction 0.482181800072418 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33510505 chr17:33510508 synonymous SNV . 0 24 hm5C_associated_SNPs_68752 0 0 0 0 2 UNC45B chr17:33510601 5'GT 33510601 Upstream 94bp
chr15 48551450 48551450 1 + A T LUAD 48551446 + 48551426 48551466 41 CCATGACAAGACCTGCTCTCCTGGACATAACTCACGCCTTT CCATGACAAGACCTGCTCTCCTGGTCATAACTCACGCCTTT < 41bp 0.741083215536554 0.425956905460822 0.8314758 0.84693825 prediction 0.482166431073108 Functional Loss - SLC12A1 ENSG00000074803 CDS Human protein_coding chr15:48551446 chr15:48551450 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_68757 0 0 0 0 2 SLC12A1 chr15:48551397 3'AG 48551397 Downstream 54bp
chr15 48551450 48551450 1 + A T LUAD 48551446 + 48551426 48551466 41 CCATGACAAGACCTGCTCTCCTGGACATAACTCACGCCTTT CCATGACAAGACCTGCTCTCCTGGTCATAACTCACGCCTTT < 41bp 0.741083215536554 0.425956905460822 0.8314758 0.84693825 prediction 0.482166431073108 Functional Loss - SLC12A1 ENSG00000074803 CDS Human protein_coding chr15:48551446 chr15:48551450 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_68757 0 0 0 0 2 SLC12A1 chr15:48551508 5'GT 48551508 Upstream 59bp
chrX 30236765 30236765 1 + G T COAD 30236763 + 30236743 30236783 41 CGCAAGGCCCGAGATGAGACCCGGGGTCTCAATGTTCCTCA CGCAAGGCCCGAGATGAGACCCTGGGTCTCAATGTTCCTCA < 41bp 0.897881215763661 0.65680488245211 0.87921095 0.12814927 prediction 0.482152666623102 Functional Loss - MAGEB2 ENSG00000099399 CDS Human protein_coding chrX:30236763 chrX:30236765 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_68758 0 0 0 0 1 MAGEB2 chrX:30236693 3'AG 30236693 Downstream 73bp
chr19 1077972 1077972 1 + G A rs144574686 1077969 + 1077949 1077989 41 GAGGAGGAGCAGGCTGGCAGCGCGCCGGGAGCAGGCAGCAC GAGGAGGAGCAGGCTGGCAGCGCACCGGGAGCAGGCAGCAC < 41bp 0.741070276689603 0.499351893853402 0.5970124 0.45567122 prediction 0.482140553379206 Functional Loss - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1077969 chr19:1077972 synonymous SNV . 0 24 hm5C_associated_SNPs_68760 0 0 1 0 1 ARHGAP45 chr19:1078044 5'GT 1078044 Upstream 73bp
chr3 140282882 140282882 1 + G T LUSC 140282879 + 140282859 140282899 41 GTCGTGGCCATGGGTGTGTACCGGGTCCGGATCGCCCACCA GTCGTGGCCATGGGTGTGTACCGTGTCCGGATCGCCCACCA < 41bp 0.741066069124443 0.385543493454408 0.9103097 0.3830144 prediction 0.482132138248885 Functional Loss - CLSTN2 ENSG00000158258 CDS Human protein_coding chr3:140282879 chr3:140282882 synonymous SNV . 0 24 hm5C_associated_SNPs_68762 0 0 0 0 1 CLSTN2 chr3:140282803 3'AG 140282803 Downstream 80bp
chr20 31606510 31606510 1 + G A rs183328639 31606507 + 31606487 31606527 41 TGCCACCCCTTTTGTGTTGCCAAGGCATGTGGGTACCGAGG TGCCACCCCTTTTGTGTTGCCAAAGCATGTGGGTACCGAGG < 41bp 0.741058333493403 0.494285995900573 0.18137178 0.19003394 prediction 0.482116666986807 Functional Loss - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31606507 chr20:31606510 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_68764 0 0 1 0 1 BPIFB2 chr20:31606443 3'AG 31606443 Downstream 68bp
chr11 57115716 57115716 1 + C T STAD 57115714 + 57115694 57115734 41 GAGATCCAGGGCTGGTGCCCCACGGAGGTGGACACAGTGGA GAGATCCAGGGCTGGTGCCCCATGGAGGTGGACACAGTGGA < 41bp 0.803551546130416 0.562494647869152 0.45131636 0.36771548 prediction 0.482113796522528 Functional Loss - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57115714 chr11:57115716 nonsynonymous SNV 0.979 1 23 hm5C_associated_SNPs_68765 0 0 0 0 2 P2RX3 chr11:57115644 3'AG 57115644 Downstream 73bp
chr11 57115716 57115716 1 + C T STAD 57115714 + 57115694 57115734 41 GAGATCCAGGGCTGGTGCCCCACGGAGGTGGACACAGTGGA GAGATCCAGGGCTGGTGCCCCATGGAGGTGGACACAGTGGA < 41bp 0.803551546130416 0.562494647869152 0.45131636 0.36771548 prediction 0.482113796522528 Functional Loss - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57115714 chr11:57115716 nonsynonymous SNV 0.979 1 23 hm5C_associated_SNPs_68765 0 0 0 0 2 P2RX3 chr11:57115737 5'GT 57115737 Upstream 22bp
chr1 221054572 221054572 1 + G T LUAD 221054570 + 221054550 221054590 41 CTAACCGGTGGGCGGCCCGCCGGGGTGCACCTCTCAGGCCT CTAACCGGTGGGCGGCCCGCCGTGGTGCACCTCTCAGGCCT < 41bp 0.899478836256493 0.658422325259783 0.9048926 0.39361548 prediction 0.482113021993421 Functional Loss - HLX ENSG00000136630 CDS Human protein_coding chr1:221054570 chr1:221054572 nonsynonymous SNV 0.264 4 23 hm5C_associated_SNPs_68766 0 0 0 0 1 HLX chr1:221054536 3'AG 221054536 Downstream 37bp
chr1 45266555 45266555 1 + G A UCEC 45266552 + 45266532 45266572 41 CGAGGCCACTGACACAGAGACTGGCAGCGCCTACGCTGTCA CGAGGCCACTGACACAGAGACTGACAGCGCCTACGCTGTCA < 41bp 0.741055978375128 0.49577905545582 0.10269374 0.021074563 prediction 0.482111956750255 Functional Loss - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45266552 chr1:45266555 nonsynonymous SNV 0.984 0 24 hm5C_associated_SNPs_68767 0 0 0 0 2 PLK3 chr1:45266512 3'AG 45266512 Downstream 44bp
chr1 45266555 45266555 1 + G A UCEC 45266552 + 45266532 45266572 41 CGAGGCCACTGACACAGAGACTGGCAGCGCCTACGCTGTCA CGAGGCCACTGACACAGAGACTGACAGCGCCTACGCTGTCA < 41bp 0.741055978375128 0.49577905545582 0.10269374 0.021074563 prediction 0.482111956750255 Functional Loss - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45266552 chr1:45266555 nonsynonymous SNV 0.984 0 24 hm5C_associated_SNPs_68767 0 0 0 0 2 PLK3 chr1:45266619 5'GT 45266619 Upstream 65bp
chr5 38338883 38338883 1 + G A LUSC 38338880 + 38338860 38338900 41 CTCAGCCGGGACATCCCGACCACGGTGAGTCTTTCCATCCT CTCAGCCGGGACATCCCGACCACAGTGAGTCTTTCCATCCT < 41bp 0.741054593864049 0.498211079563741 0.8493531 0.32365328 prediction 0.482109187728099 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38338880 chr5:38338883 synonymous SNV . 0 24 hm5C_associated_SNPs_68768 0 0 0 0 2 EGFLAM chr5:38338800 3'AG 38338800 Downstream 84bp
chr5 38338883 38338883 1 + G A LUSC 38338880 + 38338860 38338900 41 CTCAGCCGGGACATCCCGACCACGGTGAGTCTTTCCATCCT CTCAGCCGGGACATCCCGACCACAGTGAGTCTTTCCATCCT < 41bp 0.741054593864049 0.498211079563741 0.8493531 0.32365328 prediction 0.482109187728099 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38338880 chr5:38338883 synonymous SNV . 0 24 hm5C_associated_SNPs_68768 0 0 0 0 2 EGFLAM chr5:38338883 5'GT 38338883 Upstream 1bp
chr10 71266675 71266675 1 + G A rs74139176 71266672 + 71266652 71266692 41 TCACTGATGGGCTCCTGGGGCCCGGTGCCAAGCCCAGCGTG TCACTGATGGGCTCCTGGGGCCCAGTGCCAAGCCCAGCGTG < 41bp 0.761255137307462 0.520204843930873 0.48792386 0.2989691 prediction 0.482100586753178 Functional Loss - TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71266672 chr10:71266675 nonsynonymous SNV 0.028 0 24 hm5C_associated_SNPs_68769 0 0 1 0 1 TSPAN15 chr10:71266585 3'AG 71266585 Downstream 91bp
chr1 36291531 36291531 1 + T C COAD 36291530 + 36291510 36291550 41 CCTTCTCTGTTTGTTAGTATCTGCAACTGCTTTCTACCGGG CCTTCTCTGTTTGTTAGTATCCGCAACTGCTTTCTACCGGG < 41bp 0.746444227461104 0.505395310384521 0.73043776 0.2876504 prediction 0.482097834153167 Functional Loss - AGO4 ENSG00000134698 CDS Human protein_coding chr1:36291530 chr1:36291531 synonymous SNV . 0 22 hm5C_associated_SNPs_68770 0 0 1 0 1 AGO4 chr1:36291527 3'AG 36291527 Downstream 5bp
chr10 4879695 4879695 1 + G T LUAD 4879692 + 4879672 4879712 41 ACCGGGCTGGTGAAGAACATCGGGGTGTCAAACTTCAACCA ACCGGGCTGGTGAAGAACATCGGTGTGTCAAACTTCAACCA < 41bp 0.918879075614781 0.677848674107672 0.910515 0.41500494 prediction 0.48206080301422 Functional Loss - AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4879692 chr10:4879695 synonymous SNV . 0 24 hm5C_associated_SNPs_68774 0 0 0 0 2 AKR1E2 chr10:4879651 3'AG 4879651 Downstream 45bp
chr10 4879695 4879695 1 + G T LUAD 4879692 + 4879672 4879712 41 ACCGGGCTGGTGAAGAACATCGGGGTGTCAAACTTCAACCA ACCGGGCTGGTGAAGAACATCGGTGTGTCAAACTTCAACCA < 41bp 0.918879075614781 0.677848674107672 0.910515 0.41500494 prediction 0.48206080301422 Functional Loss - AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4879692 chr10:4879695 synonymous SNV . 0 24 hm5C_associated_SNPs_68774 0 0 0 0 2 AKR1E2 chr10:4879773 5'GT 4879773 Upstream 79bp
chr17 3560044 3560044 1 + G A CESC 3560041 + 3560021 3560061 41 GACGTCTTCTTCAGCCTGCACGCGGTTGTCCTCACGCTGAT GACGTCTTCTTCAGCCTGCACGCAGTTGTCCTCACGCTGAT < 41bp 0.776220789278358 0.53519320357313 0.29320848 0.105481535 prediction 0.482055171410454 Functional Loss - CTNS ENSG00000040531 CDS Human protein_coding chr17:3560041 chr17:3560044 synonymous SNV . 0 24 hm5C_associated_SNPs_68775 0 0 0 0 2 CTNS chr17:3559970 3'AG 3559970 Downstream 75bp
chr17 3560044 3560044 1 + G A CESC 3560041 + 3560021 3560061 41 GACGTCTTCTTCAGCCTGCACGCGGTTGTCCTCACGCTGAT GACGTCTTCTTCAGCCTGCACGCAGTTGTCCTCACGCTGAT < 41bp 0.776220789278358 0.53519320357313 0.29320848 0.105481535 prediction 0.482055171410454 Functional Loss - CTNS ENSG00000040531 CDS Human protein_coding chr17:3560041 chr17:3560044 synonymous SNV . 0 24 hm5C_associated_SNPs_68775 0 0 0 0 2 CTNS chr17:3560089 5'GT 3560089 Upstream 46bp
chr3 183873497 183873497 1 + C T OV 183873495 + 183873475 183873515 41 CTTGTGAAGCTGCCCCTGCCCGCCGAGCGCGTCACCTTGGC CTTGTGAAGCTGCCCCTGCCCGTCGAGCGCGTCACCTTGGC < 41bp 0.744620363720777 0.503593023179598 0.8369647 0.22012433 prediction 0.482054681082358 Functional Loss - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183873495 chr3:183873497 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_68777 0 0 1 0 1 DVL3 chr3:183873584 5'GT 183873584 Upstream 88bp
chr20 44571986 44571986 1 + C T LUSC 44571984 + 44571964 44572004 41 CACTCTGAAACGCAGGTTATCCCGAATCAAGTTCCGGGAGG CACTCTGAAACGCAGGTTATCCTGAATCAAGTTCCGGGAGG < 41bp 0.741025126856548 0.467148867353394 0.08570421 0.15743455 prediction 0.482050253713097 Functional Loss - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44571984 chr20:44571986 stopgain 1.000 1 23 hm5C_associated_SNPs_68778 0 0 0 0 2 PCIF1 chr20:44571979 3'AG 44571979 Downstream 8bp
chr20 44571986 44571986 1 + C T LUSC 44571984 + 44571964 44572004 41 CACTCTGAAACGCAGGTTATCCCGAATCAAGTTCCGGGAGG CACTCTGAAACGCAGGTTATCCTGAATCAAGTTCCGGGAGG < 41bp 0.741025126856548 0.467148867353394 0.08570421 0.15743455 prediction 0.482050253713097 Functional Loss - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44571984 chr20:44571986 stopgain 1.000 1 23 hm5C_associated_SNPs_68778 0 0 0 0 2 PCIF1 chr20:44572062 5'GT 44572062 Upstream 77bp
chr1 87045719 87045719 1 + A C UCEC 87045715 + 87045695 87045735 41 AGTAAATACTACTGATCTGTCACCAAAGGAGGCCAACTCCA AGTAAATACTACTGATCTGTCACCCAAGGAGGCCAACTCCA < 41bp 0.741021277160982 0.326959788558368 0.14145046 0.05626583 prediction 0.482042554321963 Functional Loss - CLCA4 ENSG00000016602 CDS Human protein_coding chr1:87045715 chr1:87045719 synonymous SNV . 0 25 hm5C_associated_SNPs_68780 0 0 0 0 1 CLCA4 chr1:87045625 3'AG 87045625 Downstream 95bp
chr5 176078790 176078790 1 + G T LUAD 176078788 + 176078768 176078808 41 ACATCTCAGCGCTGACAGATCTGGGAGGCCTTGACCCCGTG ACATCTCAGCGCTGACAGATCTTGGAGGCCTTGACCCCGTG < 41bp 0.891836660668611 0.650821751609396 0.92389214 0.41396654 prediction 0.48202981811843 Functional Loss - TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176078788 chr5:176078790 synonymous SNV . 0 23 hm5C_associated_SNPs_68783 0 0 1 0 1 TSPAN17 chr5:176078755 3'AG 176078755 Downstream 36bp
chr19 45176154 45176154 1 + T C GBM 45176153 + 45176133 45176173 41 GCTGCTGCGCCGCGCCCAGCCTACAGACAGTGGCACCTACC GCTGCTGCGCCGCGCCCAGCCCACAGACAGTGGCACCTACC < 41bp 0.806899820395467 0.565884979894354 0.2696182 0.07104063 prediction 0.482029681002227 Functional Loss - CEACAM19 ENSG00000186567 CDS Human protein_coding chr19:45176153 chr19:45176154 synonymous SNV . 0 22 hm5C_associated_SNPs_68784 0 0 0 0 1 CEACAM19 chr19:45176236 5'GT 45176236 Upstream 83bp
chr14 65381212 65381212 1 + C T UCEC 65381210 + 65381190 65381230 41 ACATTCCCTGTTGACTGCGTCGCGATGTGTGGCGACTGTGT ACATTCCCTGTTGACTGCGTCGTGATGTGTGGCGACTGTGT < 41bp 0.776419890467157 0.535407884536735 0.8905821 0.65735734 prediction 0.482024011860844 Functional Loss - CHURC1;CHURC1-FNTB ENSG00000125954;ENSG00000258289 CDS Human other chr14:65381210 chr14:65381212 nonsynonymous SNV 0.045 1 23 hm5C_associated_SNPs_68786 0 0 1 0 1 CHURC1;CHURC1-FNTB chr14:65381252 5'GT 65381252 Upstream 41bp
chr15 67358628 67358628 1 + G T SARC 67358626 + 67358606 67358646 41 GGTCAAGAAACTCAAGAAGACGGGGCAGCTGGACGAGCTGG GGTCAAGAAACTCAAGAAGACGTGGCAGCTGGACGAGCTGG < 41bp 0.741010759643109 0.392182178802999 0.63457966 0.18199503 prediction 0.482021519286218 Functional Loss - SMAD3 ENSG00000166949 CDS Human protein_coding chr15:67358626 chr15:67358628 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_68787 0 0 1 0 1 SMAD3 chr15:67358698 5'GT 67358698 Upstream 71bp
chr16 5041903 5041903 1 + G A BLCA 5041900 + 5041880 5041920 41 CCAGGGTACCTCGCACATTCCGCGCTGGACGCCTGCCCCAG CCAGGGTACCTCGCACATTCCGCACTGGACGCCTGCCCCAG < 41bp 0.741005135026238 0.481432209504656 0.14793703 0.031913996 prediction 0.482010270052477 Functional Loss - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5041900 chr16:5041903 nonsynonymous SNV 0.866 2 24 hm5C_associated_SNPs_68789 0 0 0 0 1 SEC14L5 chr16:5041839 3'AG 5041839 Downstream 65bp
chr16 5041902 5041902 1 + C T READ 5041900 + 5041880 5041920 41 CCAGGGTACCTCGCACATTCCGCGCTGGACGCCTGCCCCAG CCAGGGTACCTCGCACATTCCGTGCTGGACGCCTGCCCCAG < 41bp 0.741005135026238 0.467491281243116 0.14793703 0.104867935 prediction 0.482010270052477 Functional Loss - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5041900 chr16:5041902 nonsynonymous SNV 0.866 2 23 hm5C_associated_SNPs_68790 0 0 0 0 1 SEC14L5 chr16:5041839 3'AG 5041839 Downstream 64bp
chr19 4429577 4429577 1 + G A UCEC 4429574 + 4429554 4429594 41 ATAAGAAGACGGCACTCATCCGCGCGCGAGACCCCTGGGCC ATAAGAAGACGGCACTCATCCGCACGCGAGACCCCTGGGCC < 41bp 0.771038582530689 0.530033860289404 0.7643269 0.4526033 prediction 0.48200944448257 Functional Loss - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4429574 chr19:4429577 nonsynonymous SNV 0.006 2 24 hm5C_associated_SNPs_68791 0 0 1 0 1 CHAF1A chr19:4429603 5'GT 4429603 Upstream 27bp
chr6 161519335 161519335 1 + C T LUAD 161519333 + 161519313 161519353 41 TCGGAGCATGCCTTCCGACGCGCGGAGCCATGGCAGCCCTG TCGGAGCATGCCTTCCGACGCGTGGAGCCATGGCAGCCCTG < 41bp 0.784391950871991 0.543390290117551 0.4312363 0.7235354 prediction 0.482003321508879 Functional Loss - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161519333 chr6:161519335 nonsynonymous SNV 0.473 4 23 hm5C_associated_SNPs_68792 0 0 1 0 1 MAP3K4 chr6:161519310 3'AG 161519310 Downstream 26bp
chr12 51634826 51634826 1 + T C rs57917280 51634825 + 51634805 51634845 41 GGTCCCATCTATCCACCTGGCTCCACAGTGCTGGTGGAAGG GGTCCCATCTATCCACCTGGCCCCACAGTGCTGGTGGAAGG < 41bp 0.814754528663945 0.573757711900732 0.6169523 0.10652113 prediction 0.481993633526425 Functional Loss - DAZAP2 ENSG00000183283 CDS Human protein_coding chr12:51634825 chr12:51634826 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_68793 0 0 1 0 2 DAZAP2 chr12:51634751 3'AG 51634751 Downstream 76bp
chr12 51634826 51634826 1 + T C rs57917280 51634825 + 51634805 51634845 41 GGTCCCATCTATCCACCTGGCTCCACAGTGCTGGTGGAAGG GGTCCCATCTATCCACCTGGCCCCACAGTGCTGGTGGAAGG < 41bp 0.814754528663945 0.573757711900732 0.6169523 0.10652113 prediction 0.481993633526425 Functional Loss - DAZAP2 ENSG00000183283 CDS Human protein_coding chr12:51634825 chr12:51634826 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_68793 0 0 1 0 2 DAZAP2 chr12:51634900 5'GT 51634900 Upstream 75bp
chr1 110029767 110029767 1 + C T SKCM 110029765 + 110029745 110029785 41 CCAGGTTCCACGAAAACCTCCTCCAGGGAGAAGGGCCAGGG CCAGGTTCCACGAAAACCTCCTTCAGGGAGAAGGGCCAGGG < 41bp 0.740995076961519 0.471039340600537 0.91423965 0.19590169 prediction 0.481990153923039 Functional Loss - ATXN7L2 ENSG00000162650 CDS Human protein_coding chr1:110029765 chr1:110029767 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_68794 0 0 0 0 1 ATXN7L2 chr1:110029839 5'GT 110029839 Upstream 73bp
chrX 118604885 118604885 1 + C T COAD 118604883 + 118604863 118604903 41 GCTGACATCATGTACACAGGCACGCTTGACTGCTGGCGGAA GCTGACATCATGTACACAGGCATGCTTGACTGCTGGCGGAA < 41bp 0.740991662846256 0.479503759481363 0.013678461 0.011885464 prediction 0.481983325692512 Functional Loss - SLC25A5 ENSG00000005022 CDS Human protein_coding chrX:118604883 chrX:118604885 nonsynonymous SNV 0.916 3 23 hm5C_associated_SNPs_68796 0 0 1 0 1 SLC25A5 chrX:118604864 3'AG 118604864 Downstream 22bp
chr1 205494290 205494290 1 + G T BRCA 205494288 + 205494268 205494308 41 CAGACATTGGCTTTGGGAAACTGGAAACATACGTGAAACTG CAGACATTGGCTTTGGGAAACTTGAAACATACGTGAAACTG < 41bp 0.740980634471963 0.411980830060891 0.22553432 0.31905586 prediction 0.481961268943927 Functional Loss - CDK18 ENSG00000117266 CDS Human protein_coding chr1:205494288 chr1:205494290 synonymous SNV . 0 23 hm5C_associated_SNPs_68798 0 0 1 0 2 CDK18 chr1:205494267 3'AG 205494267 Downstream 24bp
chr1 205494290 205494290 1 + G T BRCA 205494288 + 205494268 205494308 41 CAGACATTGGCTTTGGGAAACTGGAAACATACGTGAAACTG CAGACATTGGCTTTGGGAAACTTGAAACATACGTGAAACTG < 41bp 0.740980634471963 0.411980830060891 0.22553432 0.31905586 prediction 0.481961268943927 Functional Loss - CDK18 ENSG00000117266 CDS Human protein_coding chr1:205494288 chr1:205494290 synonymous SNV . 0 23 hm5C_associated_SNPs_68798 0 0 1 0 2 CDK18 chr1:205494323 5'GT 205494323 Upstream 34bp
chr2 203139892 203139892 1 + T C rs139075493 203139891 + 203139871 203139911 41 TTTATGGAAAGAATTTGAAACTCCAGAGAAAGCAAACAAAA TTTATGGAAAGAATTTGAAACCCCAGAGAAAGCAAACAAAA < 41bp 0.772754874095245 0.531774522680797 0.929363 0.18100211 prediction 0.481960702828896 Functional Loss - NOP58 ENSG00000055044 CDS Human protein_coding chr2:203139891 chr2:203139892 synonymous SNV . 0 22 hm5C_associated_SNPs_68799 0 0 1 0 2 NOP58 chr2:203139836 3'AG 203139836 Downstream 57bp
chr2 203139892 203139892 1 + T C rs139075493 203139891 + 203139871 203139911 41 TTTATGGAAAGAATTTGAAACTCCAGAGAAAGCAAACAAAA TTTATGGAAAGAATTTGAAACCCCAGAGAAAGCAAACAAAA < 41bp 0.772754874095245 0.531774522680797 0.929363 0.18100211 prediction 0.481960702828896 Functional Loss - NOP58 ENSG00000055044 CDS Human protein_coding chr2:203139891 chr2:203139892 synonymous SNV . 0 22 hm5C_associated_SNPs_68799 0 0 1 0 2 NOP58 chr2:203139912 5'GT 203139912 Upstream 21bp
chrX 128926745 128926745 1 + G C HNSC 128926741 + 128926721 128926761 41 TGGGGCATGCCCGCCCCAGCCGCCGACAGAGCAAGGGCAAG TGGGGCATGCCCGCCCCAGCCGCCCACAGAGCAAGGGCAAG < 41bp 0.740979805626997 0.449893158885012 0.19970009 0.12585354 prediction 0.481959611253994 Functional Loss - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128926741 chrX:128926745 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_68800 0 0 0 0 1 SASH3 chrX:128926812 5'GT 128926812 Upstream 68bp
chr22 31003375 31003375 1 + G C LUSC 31003371 + 31003351 31003391 41 GGGGGTCCTGGGGGCCCTCACTGAGATGTGTGGTGAGTAAC GGGGGTCCTGGGGGCCCTCACTGACATGTGTGGTGAGTAAC < 41bp 0.740978412459632 0.448015850733641 0.88486266 0.38927704 prediction 0.481956824919264 Functional Loss - TCN2 ENSG00000185339 CDS Human protein_coding chr22:31003371 chr22:31003375 nonsynonymous SNV 0.178 0 25 hm5C_associated_SNPs_68801 0 0 0 0 1 TCN2 chr22:31003382 5'GT 31003382 Upstream 8bp
chr19 13056794 13056794 1 + A C LIHC 13056793 + 13056773 13056813 41 CCATCACGCTCAAAACGCTGCAGCAGCAGACCTTCAAGATC CCATCACGCTCAAAACGCTGCCGCAGCAGACCTTCAAGATC < 41bp 0.759590270983053 0.518612828896122 0.15688917 0.09442422 prediction 0.481954884173861 Functional Loss - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13056793 chr19:13056794 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_68802 0 0 1 0 1 RAD23A chr19:13056834 5'GT 13056834 Upstream 41bp
chr20 35862472 35862472 1 + C T OV 35862470 + 35862450 35862490 41 AACTTCACTTTTGCTCCTAGCACGATTATATTTCACCTGGG AACTTCACTTTTGCTCCTAGCATGATTATATTTCACCTGGG < 41bp 0.82743000262139 0.586455938547845 0.28636798 0.44663072 prediction 0.48194812814709 Functional Loss - RPN2 ENSG00000118705 CDS Human protein_coding chr20:35862470 chr20:35862472 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_68803 0 0 1 0 2 RPN2 chr20:35862423 3'AG 35862423 Downstream 50bp
chr20 35862472 35862472 1 + C T OV 35862470 + 35862450 35862490 41 AACTTCACTTTTGCTCCTAGCACGATTATATTTCACCTGGG AACTTCACTTTTGCTCCTAGCATGATTATATTTCACCTGGG < 41bp 0.82743000262139 0.586455938547845 0.28636798 0.44663072 prediction 0.48194812814709 Functional Loss - RPN2 ENSG00000118705 CDS Human protein_coding chr20:35862470 chr20:35862472 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_68803 0 0 1 0 2 RPN2 chr20:35862498 5'GT 35862498 Upstream 27bp
chr12 57828906 57828906 1 + C T LUAD 57828904 + 57828884 57828924 41 TGAGGACTGCACTGCAGCACCTCCACGGGGTCCCACAGGGG TGAGGACTGCACTGCAGCACCTTCACGGGGTCCCACAGGGG < 41bp 0.813991530309285 0.573017723628102 0.95625544 0.058450133 prediction 0.481947613362365 Functional Loss - INHBC ENSG00000175189 CDS Human protein_coding chr12:57828904 chr12:57828906 synonymous SNV . 0 23 hm5C_associated_SNPs_68804 0 0 0 0 1 INHBC chr12:57828982 5'GT 57828982 Upstream 77bp
chr10 127426930 127426930 1 + C T SKCM 127426928 + 127426908 127426948 41 TCCAGCAGCTGACCCCAGCACTCCAATCCCGTTAAAATATG TCCAGCAGCTGACCCCAGCACTTCAATCCCGTTAAAATATG < 41bp 0.74096374545665 0.434012097175061 0.9543816 0.40145838 prediction 0.4819274909133 Functional Loss - EDRF1 ENSG00000107938 CDS Human protein_coding chr10:127426928 chr10:127426930 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_68808 0 0 1 0 1 EDRF1 chr10:127427014 5'GT 127427014 Upstream 85bp
chr1 17720551 17720551 1 + C T UCEC 17720549 + 17720529 17720569 41 ACACACCTCAGGCCGCCGATCTCGATGAGTTCCCCATGAAG ACACACCTCAGGCCGCCGATCTTGATGAGTTCCCCATGAAG < 41bp 0.763794135392033 0.522831369378397 0.72990674 0.13360524 prediction 0.481925532027272 Functional Loss - PADI6 ENSG00000256049 ncRNA_exonic Human other chr1:17720549 chr1:17720551 . . 0 23 hm5C_associated_SNPs_68809 0 0 0 0 2 PADI6 chr1:17720471 3'AG 17720471 Downstream 81bp
chr1 17720551 17720551 1 + C T UCEC 17720549 + 17720529 17720569 41 ACACACCTCAGGCCGCCGATCTCGATGAGTTCCCCATGAAG ACACACCTCAGGCCGCCGATCTTGATGAGTTCCCCATGAAG < 41bp 0.763794135392033 0.522831369378397 0.72990674 0.13360524 prediction 0.481925532027272 Functional Loss - PADI6 ENSG00000256049 ncRNA_exonic Human other chr1:17720549 chr1:17720551 . . 0 23 hm5C_associated_SNPs_68809 0 0 0 0 2 PADI6 chr1:17720578 5'GT 17720578 Upstream 28bp
chr11 123994449 123994449 1 + G T LUAD 123994447 + 123994427 123994467 41 GCAGGCCGACCTAGGGGGCACTGAAATCTTGGCACCACTCC GCAGGCCGACCTAGGGGGCACTTAAATCTTGGCACCACTCC < 41bp 0.740962461046953 0.401083738002635 0.4076853 0.87000537 prediction 0.481924922093906 Functional Loss - VWA5A ENSG00000110002 CDS Human protein_coding chr11:123994447 chr11:123994449 stopgain 0.987 1 23 hm5C_associated_SNPs_68810 0 0 0 0 2 VWA5A chr11:123994367 3'AG 123994367 Downstream 83bp
chr11 123994449 123994449 1 + G T LUAD 123994447 + 123994427 123994467 41 GCAGGCCGACCTAGGGGGCACTGAAATCTTGGCACCACTCC GCAGGCCGACCTAGGGGGCACTTAAATCTTGGCACCACTCC < 41bp 0.740962461046953 0.401083738002635 0.4076853 0.87000537 prediction 0.481924922093906 Functional Loss - VWA5A ENSG00000110002 CDS Human protein_coding chr11:123994447 chr11:123994449 stopgain 0.987 1 23 hm5C_associated_SNPs_68810 0 0 0 0 2 VWA5A chr11:123994511 5'GT 123994511 Upstream 63bp
chr2 219114098 219114098 1 + C T BLCA 219114096 + 219114076 219114116 41 TCCGCCTTCAGTGCTGTTCCCTCGTCACACCAATGCCAGTG TCCGCCTTCAGTGCTGTTCCCTTGTCACACCAATGCCAGTG < 41bp 0.740957713744079 0.456806813464685 0.10536742 0.049445152 prediction 0.481915427488159 Functional Loss - ARPC2 ENSG00000163466 CDS Human protein_coding chr2:219114096 chr2:219114098 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_68812 0 0 1 0 2 ARPC2 chr2:219114087 3'AG 219114087 Downstream 12bp
chr2 219114098 219114098 1 + C T BLCA 219114096 + 219114076 219114116 41 TCCGCCTTCAGTGCTGTTCCCTCGTCACACCAATGCCAGTG TCCGCCTTCAGTGCTGTTCCCTTGTCACACCAATGCCAGTG < 41bp 0.740957713744079 0.456806813464685 0.10536742 0.049445152 prediction 0.481915427488159 Functional Loss - ARPC2 ENSG00000163466 CDS Human protein_coding chr2:219114096 chr2:219114098 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_68812 0 0 1 0 2 ARPC2 chr2:219114187 5'GT 219114187 Upstream 90bp
chr6 3085621 3085621 1 + G A UCEC 3085618 + 3085598 3085638 41 AGCTCTGCTGGGAAGCGAATCCGGAAGCTCGGCCGACATTT AGCTCTGCTGGGAAGCGAATCCGAAAGCTCGGCCGACATTT < 41bp 0.758936060928746 0.517979712339213 0.8909374 0.1342091 prediction 0.481912697179066 Functional Loss - RIPK1 ENSG00000137275 CDS Human protein_coding chr6:3085618 chr6:3085621 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_68813 0 0 1 0 1 RIPK1 chr6:3085642 5'GT 3085642 Upstream 22bp
chr7 55433880 55433880 1 + G C rs2272262 55433876 + 55433856 55433896 41 GACAGGCTGTGTTCGTCCCCCGGCGACCACGGATGAGCCCG GACAGGCTGTGTTCGTCCCCCGGCCACCACGGATGAGCCCG < 41bp 0.847426980890324 0.606470668655564 0.39088494 0.20282802 prediction 0.48191262446952 Functional Loss - LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55433876 chr7:55433880 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_68814 0 0 0 0 1 LANCL2 chr7:55433922 5'GT 55433922 Upstream 43bp
chr17 9631299 9631299 1 + G T OV 9631297 + 9631277 9631317 41 TGGAGCCCAGGCGTTTGGTACGGGGCGTGAAAGGCAGAAGC TGGAGCCCAGGCGTTTGGTACGTGGCGTGAAAGGCAGAAGC < 41bp 0.740939134831918 0.38966036876407 0.93665963 0.7499081 prediction 0.481878269663836 Functional Loss - USP43 ENSG00000154914 CDS Human protein_coding chr17:9631297 chr17:9631299 synonymous SNV . 0 23 hm5C_associated_SNPs_68817 0 0 0 0 1 USP43 chr17:9631271 3'AG 9631271 Downstream 29bp
chr12 113867071 113867071 1 + G T UCEC 113867069 + 113867049 113867089 41 TGCAGGTGGTGCAGAGGCTGCAGGGGGAGGGGGCCGAGGTT TGCAGGTGGTGCAGAGGCTGCATGGGGAGGGGGCCGAGGTT < 41bp 0.9030454666245 0.662131056562016 0.91030574 0.85660744 prediction 0.481828820124968 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113867069 chr12:113867071 nonsynonymous SNV 0.624 2 23 hm5C_associated_SNPs_68827 0 0 1 0 1 SDSL chr12:113867104 5'GT 113867104 Upstream 34bp
chr3 14172368 14172368 1 + T C UCEC 14172367 + 14172347 14172387 41 CATTGGCTGAGGGGCTCTCGCTTGTGGTGTCTCCCGACAGC CATTGGCTGAGGGGCTCTCGCCTGTGGTGTCTCCCGACAGC < 41bp 0.762240557793453 0.521334117202812 0.07453123 0.11350754 prediction 0.481812881181282 Functional Loss - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14172367 chr3:14172368 nonsynonymous SNV 0.981 0 22 hm5C_associated_SNPs_68830 0 0 1 0 1 TMEM43 chr3:14172456 5'GT 14172456 Upstream 89bp
chr22 25577681 25577681 1 + G T UCEC 25577679 + 25577659 25577699 41 GCAACAGAGGAGAAATCACCCAGGAAGGAGGAGTCGGATGA GCAACAGAGGAGAAATCACCCATGAAGGAGGAGTCGGATGA < 41bp 0.74090219452992 0.396300047398337 0.7764199 0.30094934 prediction 0.481804389059839 Functional Loss - KIAA1671 ENSG00000197077 CDS Human protein_coding chr22:25577679 chr22:25577681 nonsynonymous SNV 0.593 2 23 hm5C_associated_SNPs_68832 0 0 1 0 1 KIAA1671 chr22:25577666 3'AG 25577666 Downstream 16bp
chr11 117973949 117973949 1 + C T GBM 117973947 + 117973927 117973967 41 AGCACTGTGTCAAGAGCTTCCCCGAAGGGCCTGCAGTGGCA AGCACTGTGTCAAGAGCTTCCCTGAAGGGCCTGCAGTGGCA < 41bp 0.799715122674566 0.558821954262049 0.05530849 0.09196335 prediction 0.481786336825034 Functional Loss - TMPRSS4 ENSG00000137648 CDS Human protein_coding chr11:117973947 chr11:117973949 synonymous SNV . 0 23 hm5C_associated_SNPs_68837 0 0 0 0 1 TMPRSS4 chr11:117973968 5'GT 117973968 Upstream 20bp
chr17 41585853 41585853 1 + C T BLCA 41585851 + 41585831 41585871 41 TCTTCCCAGTGAGATGCAGACCCGAATCTTTGACCCAGCTC TCTTCCCAGTGAGATGCAGACCTGAATCTTTGACCCAGCTC < 41bp 0.740889760741265 0.451456632686241 0.43527824 0.48621905 prediction 0.481779521482529 Functional Loss - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41585851 chr17:41585853 stopgain 1.000 1 23 hm5C_associated_SNPs_68838 0 0 1 0 1 DHX8 chr17:41585888 5'GT 41585888 Upstream 36bp
chr7 99649196 99649196 1 + G T rs151107460 99649193 + 99649173 99649213 41 CTCCCAAAGTGCTGGAATTACAGGTGTGAGCCACGGCGCCG CTCCCAAAGTGCTGGAATTACAGTTGTGAGCCACGGCGCCG < 41bp 0.90769892387366 0.666809185223592 0.90161693 0.45720464 prediction 0.481779477300136 Functional Loss - ZSCAN21 ENSG00000166529 UTR5 Human protein_coding chr7:99649193 chr7:99649196 . . 0 24 hm5C_associated_SNPs_68839 0 0 1 0 2 ZSCAN21 chr7:99649101 3'AG 99649101 Downstream 96bp
chr7 99649196 99649196 1 + G T rs151107460 99649193 + 99649173 99649213 41 CTCCCAAAGTGCTGGAATTACAGGTGTGAGCCACGGCGCCG CTCCCAAAGTGCTGGAATTACAGTTGTGAGCCACGGCGCCG < 41bp 0.90769892387366 0.666809185223592 0.90161693 0.45720464 prediction 0.481779477300136 Functional Loss - ZSCAN21 ENSG00000166529 UTR5 Human protein_coding chr7:99649193 chr7:99649196 . . 0 24 hm5C_associated_SNPs_68839 0 0 1 0 2 ZSCAN21 chr7:99649233 5'GT 99649233 Upstream 38bp
chr3 100057992 100057992 1 + C T LGG 100057990 + 100057970 100058010 41 TCAAATCAGATAACGTCACTCGCGCTTGTAGCTTCATCCGG TCAAATCAGATAACGTCACTCGTGCTTGTAGCTTCATCCGG < 41bp 0.796766777386532 0.555878342879989 0.08205554 0.1627019 prediction 0.481776869013085 Functional Loss - NIT2 ENSG00000114021 CDS Human protein_coding chr3:100057990 chr3:100057992 synonymous SNV . 0 23 hm5C_associated_SNPs_68840 0 0 1 0 2 NIT2 chr3:100057931 3'AG 100057931 Downstream 62bp
chr3 100057992 100057992 1 + C T LGG 100057990 + 100057970 100058010 41 TCAAATCAGATAACGTCACTCGCGCTTGTAGCTTCATCCGG TCAAATCAGATAACGTCACTCGTGCTTGTAGCTTCATCCGG < 41bp 0.796766777386532 0.555878342879989 0.08205554 0.1627019 prediction 0.481776869013085 Functional Loss - NIT2 ENSG00000114021 CDS Human protein_coding chr3:100057990 chr3:100057992 synonymous SNV . 0 23 hm5C_associated_SNPs_68840 0 0 1 0 2 NIT2 chr3:100058049 5'GT 100058049 Upstream 58bp
chr2 118864725 118864725 1 + G T SARC 118864722 + 118864702 118864742 41 GTTACCATGTATATTTTTTGCTGGAGGCATAACAATGGGAA GTTACCATGTATATTTTTTGCTGTAGGCATAACAATGGGAA < 41bp 0.901249803613884 0.660369365581576 0.56820595 0.24613139 prediction 0.481760876064614 Functional Loss - INSIG2 ENSG00000125629 CDS Human protein_coding chr2:118864722 chr2:118864725 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_68844 0 0 1 0 2 INSIG2 chr2:118864666 3'AG 118864666 Downstream 60bp
chr2 118864725 118864725 1 + G T SARC 118864722 + 118864702 118864742 41 GTTACCATGTATATTTTTTGCTGGAGGCATAACAATGGGAA GTTACCATGTATATTTTTTGCTGTAGGCATAACAATGGGAA < 41bp 0.901249803613884 0.660369365581576 0.56820595 0.24613139 prediction 0.481760876064614 Functional Loss - INSIG2 ENSG00000125629 CDS Human protein_coding chr2:118864722 chr2:118864725 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_68844 0 0 1 0 2 INSIG2 chr2:118864765 5'GT 118864765 Upstream 41bp
chrX 79698091 79698091 1 + A T LUAD 79698087 + 79698067 79698107 41 CTTGGGATCAAGTTATAACACTGGATCAAGTGTTAGATGAA CTTGGGATCAAGTTATAACACTGGTTCAAGTGTTAGATGAA < 41bp 0.865934294295377 0.625057489741912 0.12279472 0.18338454 prediction 0.481753609106931 Functional Loss - FAM46D ENSG00000174016 CDS Human protein_coding chrX:79698087 chrX:79698091 nonsynonymous SNV 0.964 2 25 hm5C_associated_SNPs_68845 0 0 0 0 1 FAM46D chrX:79698021 3'AG 79698021 Downstream 71bp
chr7 37988585 37988585 1 + C T SKCM 37988583 + 37988563 37988603 41 TCCACCTTTGAAGACCAGTACTCCATCGGGGGGCCTCAGGA TCCACCTTTGAAGACCAGTACTTCATCGGGGGGCCTCAGGA < 41bp 0.740871562167551 0.431170845191087 0.95330584 0.061351985 prediction 0.481743124335102 Functional Loss - EPDR1 ENSG00000086289 CDS Human protein_coding chr7:37988583 chr7:37988585 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_68846 0 0 1 0 1 EPDR1 chr7:37988650 5'GT 37988650 Upstream 66bp
chr11 119059831 119059831 1 + G T UCEC 119059829 + 119059809 119059849 41 GGAGAGGCTTCAGCAGCTGCCTGAGGCTGAGCCACCCCTCT GGAGAGGCTTCAGCAGCTGCCTTAGGCTGAGCCACCCCTCT < 41bp 0.74087028417985 0.378665362540667 0.59304947 0.29290915 prediction 0.4817405683597 Functional Loss - PDZD3 ENSG00000172367 CDS Human protein_coding chr11:119059829 chr11:119059831 stopgain 0.992 0 23 hm5C_associated_SNPs_68847 0 0 0 0 1 PDZD3 chr11:119059914 5'GT 119059914 Upstream 84bp
chr16 3166467 3166467 1 + C T COAD 3166465 + 3166445 3166485 41 GGATGTGGCCTTGTACCTCTCCCGGGAGGAGTGGGGACGGC GGATGTGGCCTTGTACCTCTCCTGGGAGGAGTGGGGACGGC < 41bp 0.740863991815009 0.489426031541855 0.3570009 0.3196624 prediction 0.481727983630017 Functional Loss - ZNF205 ENSG00000122386 CDS Human protein_coding chr16:3166465 chr16:3166467 nonsynonymous SNV 0.892 0 23 hm5C_associated_SNPs_68849 0 0 0 0 2 ZNF205 chr16:3166428 3'AG 3166428 Downstream 40bp
chr16 3166467 3166467 1 + C T COAD 3166465 + 3166445 3166485 41 GGATGTGGCCTTGTACCTCTCCCGGGAGGAGTGGGGACGGC GGATGTGGCCTTGTACCTCTCCTGGGAGGAGTGGGGACGGC < 41bp 0.740863991815009 0.489426031541855 0.3570009 0.3196624 prediction 0.481727983630017 Functional Loss - ZNF205 ENSG00000122386 CDS Human protein_coding chr16:3166465 chr16:3166467 nonsynonymous SNV 0.892 0 23 hm5C_associated_SNPs_68849 0 0 0 0 2 ZNF205 chr16:3166548 5'GT 3166548 Upstream 82bp
chr7 31617952 31617952 1 + G A SKCM 31617949 + 31617929 31617969 41 TGTGTGTCTGAGGGGTCAGTCAAGGGCAGAACTCAGAAGGA TGTGTGTCTGAGGGGTCAGTCAAAGGCAGAACTCAGAAGGA < 41bp 0.767364408227673 0.526500831881809 0.9264269 0.86899656 prediction 0.481727152691728 Functional Loss - CCDC129 ENSG00000180347 CDS Human protein_coding chr7:31617949 chr7:31617952 synonymous SNV . 0 24 hm5C_associated_SNPs_68850 0 0 0 0 1 CCDC129 chr7:31618048 5'GT 31618048 Upstream 97bp
chr20 35826857 35826857 1 + T C rs146315738 35826856 + 35826836 35826876 41 AGCAATGTGGATTCCCTCTTCTACGCTGCCCAGGCCAGCCA AGCAATGTGGATTCCCTCTTCCACGCTGCCCAGGCCAGCCA < 41bp 0.740862604237329 0.477320448838468 0.11763957 0.0829995 prediction 0.481725208474658 Functional Loss - RPN2 ENSG00000118705 CDS Human protein_coding chr20:35826856 chr20:35826857 nonsynonymous SNV 0.875 1 22 hm5C_associated_SNPs_68851 1 0 1 0 1 RPN2 chr20:35826895 5'GT 35826895 Upstream 39bp
chr16 81295852 81295852 1 + G T LIHC 81295849 + 81295829 81295869 41 ACCTCAGAGACCAATTACATCAGGAAAATCAACCCACAGAC ACCTCAGAGACCAATTACATCAGTAAAATCAACCCACAGAC < 41bp 0.920919574643409 0.680063163498841 0.7741069 0.15337756 prediction 0.481712822289135 Functional Loss - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81295849 chr16:81295852 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_68852 0 0 0 0 1 BCO1 chr16:81295888 5'GT 81295888 Upstream 37bp
chr4 660340 660340 1 + G A rs61739716 660337 + 660317 660357 41 CAGCCTATGATGGACCGGAACAAGGCGGCCGAGCTCCCCAA CAGCCTATGATGGACCGGAACAAAGCGGCCGAGCTCCCCAA < 41bp 0.761572718199607 0.520718606487122 0.8954199 0.4541539 prediction 0.481708223424971 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:660337 chr4:660340 synonymous SNV . 0 24 hm5C_associated_SNPs_68855 2 0 0 0 1 PDE6B chr4:660320 3'AG 660320 Downstream 21bp
chr4 38893400 38893400 1 + G T LUAD 38893398 + 38893378 38893418 41 TCCAAGTGGAGGAGGATGGGCAGGCTGGGGATCCTGGGGCA TCCAAGTGGAGGAGGATGGGCATGCTGGGGATCCTGGGGCA < 41bp 0.740851405274445 0.382678305524346 0.6758039 0.6261195 prediction 0.481702810548891 Functional Loss - FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38893398 chr4:38893400 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_68856 0 0 1 0 2 FAM114A1 chr4:38893364 3'AG 38893364 Downstream 37bp
chr4 38893400 38893400 1 + G T LUAD 38893398 + 38893378 38893418 41 TCCAAGTGGAGGAGGATGGGCAGGCTGGGGATCCTGGGGCA TCCAAGTGGAGGAGGATGGGCATGCTGGGGATCCTGGGGCA < 41bp 0.740851405274445 0.382678305524346 0.6758039 0.6261195 prediction 0.481702810548891 Functional Loss - FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38893398 chr4:38893400 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_68856 0 0 1 0 2 FAM114A1 chr4:38893451 5'GT 38893451 Upstream 52bp
chr3 185434365 185434365 1 + C T UCEC 185434363 + 185434343 185434383 41 GCTGGGCTGGCCACCAGACTCACGTCCTCAGTAAGGAATTT GCTGGGCTGGCCACCAGACTCATGTCCTCAGTAAGGAATTT < 41bp 0.741423098712225 0.500575052853272 0.23260733 0.35975575 prediction 0.481696091717907 Functional Loss - IGF2BP2-AS1 ENSG00000163915 CDS Human antisense chr3:185434363 chr3:185434365 synonymous SNV . 0 23 hm5C_associated_SNPs_68859 0 0 0 0 1 IGF2BP2-AS1 chr3:185434372 5'GT 185434372 Upstream 8bp
chr9 125746965 125746965 1 + G T UCEC 125746962 + 125746942 125746982 41 CATTAGTAGGGCTCCAAAAACCAGAGATGAGCCTACCAGTG CATTAGTAGGGCTCCAAAAACCATAGATGAGCCTACCAGTG < 41bp 0.740847637839935 0.361526786945144 0.8930714 0.51507574 prediction 0.481695275679869 Functional Loss - RABGAP1 ENSG00000011454 CDS Human protein_coding chr9:125746962 chr9:125746965 stopgain 1.000 1 24 hm5C_associated_SNPs_68861 0 0 1 0 1 RABGAP1 chr9:125746998 5'GT 125746998 Upstream 34bp
chr3 148744621 148744621 1 + G C OV 148744620 + 148744600 148744640 41 GGCACAGCCGTTTGTATCCTCGGAAGAACGGAAGGAACGAT GGCACAGCCGTTTGTATCCTCCGAAGAACGGAAGGAACGAT < 41bp 0.86688741873017 0.626041200840597 0.36349595 0.24277917 prediction 0.481692435779147 Functional Loss - GYG1 ENSG00000163754 CDS Human protein_coding chr3:148744620 chr3:148744621 nonsynonymous SNV 0.990 0 22 hm5C_associated_SNPs_68862 0 0 1 0 1 GYG1 chr3:148744547 3'AG 148744547 Downstream 75bp
chr1 220970141 220970141 1 + G T UCEC 220970138 + 220970118 220970158 41 ATAGCAGACTTGTTCCGACCCAAGGACCAGGTGAGAGGTTC ATAGCAGACTTGTTCCGACCCAATGACCAGGTGAGAGGTTC < 41bp 0.740846119226761 0.340744307945422 0.17361107 0.06435096 prediction 0.481692238453522 Functional Loss - MARC1 ENSG00000186205 CDS Human protein_coding chr1:220970138 chr1:220970141 nonsynonymous SNV 0.049 0 24 hm5C_associated_SNPs_68863 0 0 1 0 1 MARC1 chr1:220970147 5'GT 220970147 Upstream 7bp
chr12 20885884 20885884 1 + G T HNSC 20885882 + 20885862 20885902 41 AGTGGCCCTTGGAATATTCTCTGGGGGGATAGTTATGAAAA AGTGGCCCTTGGAATATTCTCTTGGGGGATAGTTATGAAAA < 41bp 0.885419844949465 0.644574052786101 0.24494863 0.017813742 prediction 0.481691584326727 Functional Loss - SLCO1C1 ENSG00000139155 CDS Human protein_coding chr12:20885882 chr12:20885884 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_68864 0 0 0 0 1 SLCO1C1 chr12:20885843 3'AG 20885843 Downstream 42bp
chr19 5667130 5667130 1 + C T SKCM 5667128 + 5667108 5667148 41 GATGGCTGGGGGGGCTATGGCTCTGACAAGAGGATGAGCGA GATGGCTGGGGGGGCTATGGCTTTGACAAGAGGATGAGCGA < 41bp 0.740844589201399 0.465846971161736 0.60133713 0.5348132 prediction 0.481689178402798 Functional Loss - SAFB ENSG00000160633 CDS Human protein_coding chr19:5667128 chr19:5667130 nonsynonymous SNV 0.505 4 23 hm5C_associated_SNPs_68868 0 0 1 0 2 SAFB chr19:5667057 3'AG 5667057 Downstream 74bp
chr19 5667130 5667130 1 + C T SKCM 5667128 + 5667108 5667148 41 GATGGCTGGGGGGGCTATGGCTCTGACAAGAGGATGAGCGA GATGGCTGGGGGGGCTATGGCTTTGACAAGAGGATGAGCGA < 41bp 0.740844589201399 0.465846971161736 0.60133713 0.5348132 prediction 0.481689178402798 Functional Loss - SAFB ENSG00000160633 CDS Human protein_coding chr19:5667128 chr19:5667130 nonsynonymous SNV 0.505 4 23 hm5C_associated_SNPs_68868 0 0 1 0 2 SAFB chr19:5667175 5'GT 5667175 Upstream 46bp
chr11 6412127 6412127 1 + C T CESC 6412125 + 6412105 6412145 41 ATCTGCAAAGGTCTATTCACCGCCATCAACCTCGGGCTGAA ATCTGCAAAGGTCTATTCACCGTCATCAACCTCGGGCTGAA < 41bp 0.761295122618036 0.520453632891996 0.095463455 0.035699844 prediction 0.481682979452079 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6412125 chr11:6412127 nonsynonymous SNV 0.027 1 23 hm5C_associated_SNPs_68870 0 0 0 0 1 SMPD1 chr11:6412146 5'GT 6412146 Upstream 20bp
chr19 58904394 58904394 1 + G T UCEC 58904392 + 58904372 58904412 41 CAAGTACCTGCCTCACAGTGCAGGGCGGTATGCCGCCAAAC CAAGTACCTGCCTCACAGTGCATGGCGGTATGCCGCCAAAC < 41bp 0.740839018321283 0.384125391454847 0.78868836 0.36879146 prediction 0.481678036642567 Functional Loss - RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904392 chr19:58904394 nonsynonymous SNV 0.976 4 23 hm5C_associated_SNPs_68871 0 0 1 0 1 RPS5 chr19:58904343 3'AG 58904343 Downstream 52bp
chr1 16073510 16073510 1 + C T STAD 16073508 + 16073488 16073528 41 TACTGGGCGAGCTCTGGTGTCTCGTGGGCGTCCGCACCCTG TACTGGGCGAGCTCTGGTGTCTTGTGGGCGTCCGCACCCTG < 41bp 0.805515815683424 0.564677395376251 0.26162332 0.24105111 prediction 0.481676840614347 Functional Loss - TMEM82 ENSG00000162460 CDS Human protein_coding chr1:16073508 chr1:16073510 synonymous SNV . 0 23 hm5C_associated_SNPs_68872 0 0 0 0 1 TMEM82 chr1:16073549 5'GT 16073549 Upstream 40bp
chr7 130002336 130002336 1 + C T COAD 130002334 + 130002314 130002354 41 GATTGACACTGGAATTCACTCCCGGGAGTGGATCACCCATG GATTGACACTGGAATTCACTCCTGGGAGTGGATCACCCATG < 41bp 0.815307139121376 0.57447758351975 0.13887474 0.11773294 prediction 0.481659111203252 Functional Loss - CPA5 ENSG00000158525 CDS Human protein_coding chr7:130002334 chr7:130002336 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_68877 0 0 0 0 2 CPA5 chr7:130002279 3'AG 130002279 Downstream 58bp
chr7 130002336 130002336 1 + C T COAD 130002334 + 130002314 130002354 41 GATTGACACTGGAATTCACTCCCGGGAGTGGATCACCCATG GATTGACACTGGAATTCACTCCTGGGAGTGGATCACCCATG < 41bp 0.815307139121376 0.57447758351975 0.13887474 0.11773294 prediction 0.481659111203252 Functional Loss - CPA5 ENSG00000158525 CDS Human protein_coding chr7:130002334 chr7:130002336 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_68877 0 0 0 0 2 CPA5 chr7:130002380 5'GT 130002380 Upstream 45bp
chr22 50957143 50957143 1 + G A rs141300835 50957140 + 50957120 50957160 41 GCAGGAGCCCTGTCCCAGCACTCGGCTTCTCCCAGGAGCCA GCAGGAGCCCTGTCCCAGCACTCAGCTTCTCCCAGGAGCCA < 41bp 0.771118115605225 0.530290237767562 0.08429867 0.038087368 prediction 0.481655755675326 Functional Loss - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50957140 chr22:50957143 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_68878 0 0 1 0 2 NCAPH2 chr22:50957078 3'AG 50957078 Downstream 66bp
chr22 50957143 50957143 1 + G A rs141300835 50957140 + 50957120 50957160 41 GCAGGAGCCCTGTCCCAGCACTCGGCTTCTCCCAGGAGCCA GCAGGAGCCCTGTCCCAGCACTCAGCTTCTCCCAGGAGCCA < 41bp 0.771118115605225 0.530290237767562 0.08429867 0.038087368 prediction 0.481655755675326 Functional Loss - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50957140 chr22:50957143 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_68878 0 0 1 0 2 NCAPH2 chr22:50957161 5'GT 50957161 Upstream 19bp
chr20 24930181 24930181 1 + G A UCEC 24930178 + 24930158 24930198 41 CTCTGCTGGCCTTCTGCTGCCTGGTCTTGAGCACCACTGGG CTCTGCTGGCCTTCTGCTGCCTGATCTTGAGCACCACTGGG < 41bp 0.740827255655362 0.49390575419949 0.41412047 0.43542254 prediction 0.481654511310724 Functional Loss - CST7 ENSG00000077984 CDS Human protein_coding chr20:24930178 chr20:24930181 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_68879 0 0 0 0 1 CST7 chr20:24930211 5'GT 24930211 Upstream 31bp
chr12 48172891 48172891 1 + G A OV 48172888 + 48172868 48172908 41 GGACCTGGCTCAAGGGGCTGCGCGGCTTCTTCTTCGTGGGC GGACCTGGCTCAAGGGGCTGCGCAGCTTCTTCTTCGTGGGC < 41bp 0.76672758096461 0.525900424301754 0.17470405 0.008779138 prediction 0.481654313325713 Functional Loss - SLC48A1 ENSG00000211584 CDS Human protein_coding chr12:48172888 chr12:48172891 nonsynonymous SNV 0.978 1 24 hm5C_associated_SNPs_68880 0 0 1 0 1 SLC48A1 chr12:48172811 3'AG 48172811 Downstream 81bp
chr19 6924883 6924883 1 + G T UCEC 6924880 + 6924860 6924900 41 GGTATACACAAGACTGACAACAAGGTCTACATCGCTCGGGC GGTATACACAAGACTGACAACAATGTCTACATCGCTCGGGC < 41bp 0.740824836534563 0.344054484827097 0.36731806 0.08321527 prediction 0.481649673069126 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6924880 chr19:6924883 nonsynonymous SNV 0.019 1 24 hm5C_associated_SNPs_68881 0 0 0 0 1 ADGRE1 chr19:6924883 5'GT 6924883 Upstream 1bp
chr10 1046703 1046703 1 + C T SKCM 1046701 + 1046681 1046721 41 CCATCACTGCCCTGGCCCACCTCCGTGCTGCGGTCCTGTAT CCATCACTGCCCTGGCCCACCTTCGTGCTGCGGTCCTGTAT < 41bp 0.844574976823458 0.603752984302476 0.7600885 0.1620411 prediction 0.481643985041963 Functional Loss - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1046701 chr10:1046703 synonymous SNV . 0 23 hm5C_associated_SNPs_68882 0 0 1 0 1 GTPBP4 chr10:1046617 3'AG 1046617 Downstream 87bp
chr10 20290821 20290821 1 + C T PAAD 20290819 + 20290799 20290839 41 GACTTTCTCAAGGCGGTAGACACGAACCGAGCAAGCGTCGG GACTTTCTCAAGGCGGTAGACATGAACCGAGCAAGCGTCGG < 41bp 0.819000380857016 0.578178781689248 0.38790074 0.49795532 prediction 0.481643198335535 Functional Loss - PLXDC2 ENSG00000120594 CDS Human protein_coding chr10:20290819 chr10:20290821 nonsynonymous SNV 0.009 3 23 hm5C_associated_SNPs_68883 0 0 1 0 1 PLXDC2 chr10:20290915 5'GT 20290915 Upstream 95bp
chr10 105128238 105128238 1 + G T BLCA 105128236 + 105128216 105128256 41 GCCCTGCGGCCCCCGACCCTCCGGGCACTGGCGCTTCGGGG GCCCTGCGGCCCCCGACCCTCCTGGCACTGGCGCTTCGGGG < 41bp 0.905290844326686 0.664469540839985 0.8913176 0.23457938 prediction 0.481642606973401 Functional Loss - TAF5 ENSG00000148835 CDS Human protein_coding chr10:105128236 chr10:105128238 synonymous SNV . 0 23 hm5C_associated_SNPs_68884 0 0 1 0 1 TAF5 chr10:105128305 5'GT 105128305 Upstream 68bp
chrX 100506064 100506064 1 + G A COAD 100506061 + 100506041 100506081 41 ATCTGTAGGCAGTGCCCCATCAAGGGGTTCAGGTAGGGAAA ATCTGTAGGCAGTGCCCCATCAAAGGGTTCAGGTAGGGAAA < 41bp 0.760575075002886 0.519756081561149 0.9152144 0.84961486 prediction 0.481637986883473 Functional Loss - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100506061 chrX:100506064 synonymous SNV . 0 24 hm5C_associated_SNPs_68885 0 0 0 0 1 DRP2 chrX:100506072 5'GT 100506072 Upstream 9bp
chr16 29816292 29816292 1 + C T STAD 29816290 + 29816270 29816310 41 CGCAGTCTTCAGCGCATTGGCCCGAAGAAGGCCCAGCTAAT CGCAGTCTTCAGCGCATTGGCCTGAAGAAGGCCCAGCTAAT < 41bp 0.740818666306528 0.46736829606659 0.36906856 0.36264986 prediction 0.481637332613056 Functional Loss - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29816290 chr16:29816292 nonsynonymous SNV 0.960 1 23 hm5C_associated_SNPs_68886 0 0 1 0 1 KIF22 chr16:29816347 5'GT 29816347 Upstream 56bp
chr19 14070879 14070879 1 + C T HNSC 14070877 + 14070857 14070897 41 CCCCCACTGAGGAGGGCCAGCTCCGGTGAGCGCGGGGATCC CCCCCACTGAGGAGGGCCAGCTTCGGTGAGCGCGGGGATCC < 41bp 0.740816638416495 0.480369415152064 0.80500615 0.69590706 prediction 0.481633276832991 Functional Loss - DCAF15 ENSG00000132017 CDS Human protein_coding chr19:14070877 chr19:14070879 synonymous SNV . 0 23 hm5C_associated_SNPs_68887 0 0 1 1 2 DCAF15 chr19:14070796 3'AG 14070796 Downstream 84bp
chr19 14070879 14070879 1 + C T HNSC 14070877 + 14070857 14070897 41 CCCCCACTGAGGAGGGCCAGCTCCGGTGAGCGCGGGGATCC CCCCCACTGAGGAGGGCCAGCTTCGGTGAGCGCGGGGATCC < 41bp 0.740816638416495 0.480369415152064 0.80500615 0.69590706 prediction 0.481633276832991 Functional Loss - DCAF15 ENSG00000132017 CDS Human protein_coding chr19:14070877 chr19:14070879 synonymous SNV . 0 23 hm5C_associated_SNPs_68887 0 0 1 1 2 DCAF15 chr19:14070881 5'GT 14070881 Upstream 3bp
chr21 47333959 47333959 1 + C T UCEC 47333957 + 47333937 47333977 41 CAGGTAAGAGCCGATCCGCTCGCGGCCTCCACTGCCAACCT CAGGTAAGAGCCGATCCGCTCGTGGCCTCCACTGCCAACCT < 41bp 0.751815911504296 0.511007691201303 0.7062986 0.64210236 prediction 0.481616440605986 Functional Loss - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47333957 chr21:47333959 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_68888 0 0 0 0 2 PCBP3 chr21:47333865 3'AG 47333865 Downstream 95bp
chr21 47333959 47333959 1 + C T UCEC 47333957 + 47333937 47333977 41 CAGGTAAGAGCCGATCCGCTCGCGGCCTCCACTGCCAACCT CAGGTAAGAGCCGATCCGCTCGTGGCCTCCACTGCCAACCT < 41bp 0.751815911504296 0.511007691201303 0.7062986 0.64210236 prediction 0.481616440605986 Functional Loss - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47333957 chr21:47333959 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_68888 0 0 0 0 2 PCBP3 chr21:47334008 5'GT 47334008 Upstream 50bp
chr8 126021503 126021503 1 + T C UCEC 126021502 + 126021482 126021522 41 CCAGATTTCATCCAGTGAAACTCGAGTACTTGTTGACATTA CCAGATTTCATCCAGTGAAACCCGAGTACTTGTTGACATTA < 41bp 0.801804824701147 0.561000528499794 0.29494387 0.17039812 prediction 0.481608592402706 Functional Loss - SQLE ENSG00000104549 CDS Human protein_coding chr8:126021502 chr8:126021503 synonymous SNV . 0 22 hm5C_associated_SNPs_68890 0 0 1 0 2 SQLE chr8:126021414 3'AG 126021414 Downstream 90bp
chr8 126021503 126021503 1 + T C UCEC 126021502 + 126021482 126021522 41 CCAGATTTCATCCAGTGAAACTCGAGTACTTGTTGACATTA CCAGATTTCATCCAGTGAAACCCGAGTACTTGTTGACATTA < 41bp 0.801804824701147 0.561000528499794 0.29494387 0.17039812 prediction 0.481608592402706 Functional Loss - SQLE ENSG00000104549 CDS Human protein_coding chr8:126021502 chr8:126021503 synonymous SNV . 0 22 hm5C_associated_SNPs_68890 0 0 1 0 2 SQLE chr8:126021585 5'GT 126021585 Upstream 83bp
chr17 20135686 20135686 1 + C T UCEC 20135684 + 20135664 20135704 41 AGCTGGGGGATGTGCAGGGCCACGGCAGGGTGGTCACCAGC AGCTGGGGGATGTGCAGGGCCATGGCAGGGTGGTCACCAGC < 41bp 0.740795754172619 0.481615715733068 0.6209306 0.47399312 prediction 0.481591508345238 Functional Loss - SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135684 chr17:20135686 synonymous SNV . 0 23 hm5C_associated_SNPs_68892 0 0 1 0 2 SPECC1 chr17:20135718 5'GT 20135718 Upstream 33bp
chr17 20135686 20135686 1 + C T UCEC 20135684 + 20135664 20135704 41 AGCTGGGGGATGTGCAGGGCCACGGCAGGGTGGTCACCAGC AGCTGGGGGATGTGCAGGGCCATGGCAGGGTGGTCACCAGC < 41bp 0.740795754172619 0.481615715733068 0.6209306 0.47399312 prediction 0.481591508345238 Functional Loss - SPECC1 ENSG00000128487 CDS Human lincRNA chr17:20135684 chr17:20135686 synonymous SNV . 0 23 hm5C_associated_SNPs_68892 0 0 1 0 2 SPECC1 chr17:20135727 5'GT 20135727 Upstream 42bp
chr16 55361536 55361536 1 + A C STAD 55361532 + 55361512 55361552 41 AATTGAGTGGCGCCGGTCGCCGAAAGAACGCGACCCGGGAG AATTGAGTGGCGCCGGTCGCCGAACGAACGCGACCCGGGAG < 41bp 0.928521422194686 0.687739761461838 0.8956344 0.905738 prediction 0.481563321465696 Functional Loss - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55361532 chr16:55361536 nonsynonymous SNV 0.227 4 25 hm5C_associated_SNPs_68897 0 0 0 0 1 IRX6 chr16:55361498 3'AG 55361498 Downstream 39bp
chr22 43520122 43520122 1 + A C UCEC 43520121 + 43520101 43520141 41 CCGACCATGGAGGTTCTTGGCATGACTGACTCTGAAGAGGA CCGACCATGGAGGTTCTTGGCCTGACTGACTCTGAAGAGGA < 41bp 0.76538528542642 0.524607982431711 0.3251232 0.10804692 prediction 0.481554605989417 Functional Loss - BIK ENSG00000100290 CDS Human protein_coding chr22:43520121 chr22:43520122 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_68899 0 0 0 0 1 BIK chr22:43520189 5'GT 43520189 Upstream 68bp
chr9 133738212 133738212 1 + G C LUAD 133738208 + 133738188 133738228 41 CGAGTTGGTTCATCATCATTCAACGGTGGCCGACGGGCTCA CGAGTTGGTTCATCATCATTCAACCGTGGCCGACGGGCTCA < 41bp 0.740771141472246 0.445412624989602 0.35518432 0.18884593 prediction 0.481542282944491 Functional Loss - ABL1 ENSG00000097007 CDS Human protein_coding chr9:133738208 chr9:133738212 synonymous SNV . 0 25 hm5C_associated_SNPs_68902 0 0 1 0 1 ABL1 chr9:133738150 3'AG 133738150 Downstream 63bp
chr1 247597430 247597430 1 + G A SKCM 247597427 + 247597407 247597447 41 TGGGGCGCTGTGGCCTCTCGCATGAGTGCTGCTTCGACATC TGGGGCGCTGTGGCCTCTCGCATAAGTGCTGCTTCGACATC < 41bp 0.7630209068288 0.522251241661278 0.44273382 0.13806984 prediction 0.481539330335043 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247597427 chr1:247597430 nonsynonymous SNV 0.469 0 24 hm5C_associated_SNPs_68903 0 0 0 0 1 NLRP3 chr1:247597405 3'AG 247597405 Downstream 26bp
chrX 43587532 43587532 1 + C T UCEC 43587530 + 43587510 43587550 41 GAAGCAGTGCGGGGGCACCACTCGGATATTCTCTGTCACCA GAAGCAGTGCGGGGGCACCACTTGGATATTCTCTGTCACCA < 41bp 0.82511619453156 0.584350493644624 0.46720424 0.48295972 prediction 0.481531401773873 Functional Loss - MAOA ENSG00000189221 CDS Human protein_coding chrX:43587530 chrX:43587532 nonsynonymous SNV 0.990 5 23 hm5C_associated_SNPs_68904 0 0 1 0 1 MAOA chrX:43587561 5'GT 43587561 Upstream 30bp
chr17 42249664 42249664 1 + G A SKCM 42249661 + 42249641 42249681 41 ACGACTCCTTTGCACCTCTGCACGATCCCCGAGTCCTTGCA ACGACTCCTTTGCACCTCTGCACAATCCCCGAGTCCTTGCA < 41bp 0.743726091308602 0.502970026051231 0.3501177 0.1798704 prediction 0.481512130514742 Functional Loss - ASB16 ENSG00000161664 CDS Human protein_coding chr17:42249661 chr17:42249664 synonymous SNV . 0 24 hm5C_associated_SNPs_68908 0 0 0 0 1 ASB16 chr17:42249681 5'GT 42249681 Upstream 18bp
chr1 86961305 86961305 1 + G C BLCA 86961301 + 86961281 86961321 41 GAGGAGTTAACGCAGCCAGACGGAGAGTGATACCCCAGCAG GAGGAGTTAACGCAGCCAGACGGACAGTGATACCCCAGCAG < 41bp 0.740753419806085 0.441871229338368 0.8556983 0.38115126 prediction 0.481506839612169 Functional Loss - CLCA1 ENSG00000016490 CDS Human protein_coding chr1:86961301 chr1:86961305 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_68910 0 0 0 0 1 CLCA1 chr1:86961358 5'GT 86961358 Upstream 54bp
chr11 557989 557989 1 - C A rs7129811 557991 - 557971 558011 41 TGCAGACCACCCGCACGCTCCAGGAGATGGAGGCCGAGCTG TGCAGACCACCCGCACGCTCCATGAGATGGAGGCCGAGCTG < 41bp 0.896596730872586 0.655844754963506 0.8952627 0.4680904 prediction 0.48150395181816 Functional Loss - LMNTD2 ENSG00000185522 CDS Human protein_coding chr11:557991 chr11:557989 nonsynonymous SNV 0.012 2 23 hm5C_associated_SNPs_68911 0 0 0 0 1 LMNTD2 chr11:558039 3'AG 558039 Downstream 51bp
chr19 19349199 19349199 1 + G A SKCM 19349196 + 19349176 19349216 41 ACCTGACCAGCGTCCACTCACCGGAGGAACACAGCTTCATT ACCTGACCAGCGTCCACTCACCGAAGGAACACAGCTTCATT < 41bp 0.75009886950642 0.509351549289485 0.87547743 0.10601711 prediction 0.481494640433869 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19349196 chr19:19349199 nonsynonymous SNV 0.313 3 24 hm5C_associated_SNPs_68912 0 0 0 0 1 NCAN chr19:19349220 5'GT 19349220 Upstream 22bp
chr20 44421354 44421354 1 + G T SARC 44421352 + 44421332 44421372 41 TGATAAAGCACCGGCAGGTGCAGCGGAGGGGCCGCCGCTCA TGATAAAGCACCGGCAGGTGCATCGGAGGGGCCGCCGCTCA < 41bp 0.902728065230214 0.661986850969214 0.8873131 0.6189821 prediction 0.481482428522 Functional Loss - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44421352 chr20:44421354 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_68915 0 0 1 0 2 DNTTIP1 chr20:44421316 3'AG 44421316 Downstream 39bp
chr20 44421354 44421354 1 + G T SARC 44421352 + 44421332 44421372 41 TGATAAAGCACCGGCAGGTGCAGCGGAGGGGCCGCCGCTCA TGATAAAGCACCGGCAGGTGCATCGGAGGGGCCGCCGCTCA < 41bp 0.902728065230214 0.661986850969214 0.8873131 0.6189821 prediction 0.481482428522 Functional Loss - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44421352 chr20:44421354 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_68915 0 0 1 0 2 DNTTIP1 chr20:44421386 5'GT 44421386 Upstream 33bp
chr2 95944795 95944795 1 + G A rs149624755 95944792 + 95944772 95944812 41 GGACACTGGCTGAAGGGTTCCCGGGCTTGGAGGCAGCTTCC GGACACTGGCTGAAGGGTTCCCGAGCTTGGAGGCAGCTTCC < 41bp 0.740737325188671 0.492002652516181 0.88339376 0.40108392 prediction 0.481474650377341 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95944792 chr2:95944795 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_68917 0 0 0 0 2 PROM2 chr2:95944733 3'AG 95944733 Downstream 63bp
chr2 95944795 95944795 1 + G A rs149624755 95944792 + 95944772 95944812 41 GGACACTGGCTGAAGGGTTCCCGGGCTTGGAGGCAGCTTCC GGACACTGGCTGAAGGGTTCCCGAGCTTGGAGGCAGCTTCC < 41bp 0.740737325188671 0.492002652516181 0.88339376 0.40108392 prediction 0.481474650377341 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95944792 chr2:95944795 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_68917 0 0 0 0 2 PROM2 chr2:95944892 5'GT 95944892 Upstream 98bp
chr20 30602818 30602818 1 + G A LUSC 30602815 + 30602795 30602835 41 ACTCGATGCCCCTTTATCCCCCCGACTACCTCATCGACCCC ACTCGATGCCCCTTTATCCCCCCAACTACCTCATCGACCCC < 41bp 0.750900834775631 0.510164316808611 0.043162227 0.034798443 prediction 0.48147303593404 Functional Loss - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30602815 chr20:30602818 nonsynonymous SNV 0.939 3 24 hm5C_associated_SNPs_68919 0 0 0 0 1 CCM2L chr20:30602874 5'GT 30602874 Upstream 57bp
chr19 12858298 12858298 1 + G T LUSC 12858295 + 12858275 12858315 41 ATCCAGGAGCTGGCCAAGTGCAAGATTGACACACACAATAT ATCCAGGAGCTGGCCAAGTGCAATATTGACACACACAATAT < 41bp 0.921232301768101 0.680495870871302 0.20075583 0.031193316 prediction 0.481472861793597 Functional Loss - ASNA1 ENSG00000198356 CDS Human protein_coding chr19:12858295 chr19:12858298 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_68920 0 0 1 0 1 ASNA1 chr19:12858209 3'AG 12858209 Downstream 90bp
chr16 28592443 28592443 1 + A T SKCM 28592439 + 28592419 28592459 41 TTGCAGAACTTCTCACAGAGCTCCATCAGCTGATCAAACAA TTGCAGAACTTCTCACAGAGCTCCTTCAGCTGATCAAACAA < 41bp 0.740734639685351 0.379404199214557 0.6000351 0.07719046 prediction 0.481469279370702 Functional Loss - SGF29 ENSG00000176476 CDS Human protein_coding chr16:28592439 chr16:28592443 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_68921 0 0 1 0 2 SGF29 chr16:28592376 3'AG 28592376 Downstream 68bp
chr16 28592443 28592443 1 + A T SKCM 28592439 + 28592419 28592459 41 TTGCAGAACTTCTCACAGAGCTCCATCAGCTGATCAAACAA TTGCAGAACTTCTCACAGAGCTCCTTCAGCTGATCAAACAA < 41bp 0.740734639685351 0.379404199214557 0.6000351 0.07719046 prediction 0.481469279370702 Functional Loss - SGF29 ENSG00000176476 CDS Human protein_coding chr16:28592439 chr16:28592443 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_68921 0 0 1 0 2 SGF29 chr16:28592465 5'GT 28592465 Upstream 23bp
chr16 5057420 5057420 1 + C T PCPG 5057418 + 5057398 5057438 41 ACAGAAGAGGAGCAGGAGCACACGGACCAGCTGTGGCAGTG ACAGAAGAGGAGCAGGAGCACATGGACCAGCTGTGGCAGTG < 41bp 0.80186452233283 0.561138723597292 0.70999736 0.8232827 prediction 0.481451597471076 Functional Loss - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5057418 chr16:5057420 nonsynonymous SNV 0.019 0 23 hm5C_associated_SNPs_68924 0 0 0 0 1 SEC14L5 chr16:5057487 5'GT 5057487 Upstream 68bp
chr9 138395463 138395463 1 + C T PAAD 138395461 + 138395441 138395481 41 TGGAACAGACAGCCACGCACCTCCAGCTGGCCTTGAACTTC TGGAACAGACAGCCACGCACCTTCAGCTGGCCTTGAACTTC < 41bp 0.828452146354301 0.587726405716432 0.8991302 0.018978477 prediction 0.481451481275737 Functional Loss - MRPS2 ENSG00000122140 CDS Human protein_coding chr9:138395461 chr9:138395463 synonymous SNV . 0 23 hm5C_associated_SNPs_68925 0 0 1 0 1 MRPS2 chr9:138395388 3'AG 138395388 Downstream 76bp
chr8 121215961 121215961 1 + G T TGCT 121215958 + 121215938 121215978 41 TCTGTGTAAGGGGTGAAAAACGCGGATGTGAATGAGCTGCA TCTGTGTAAGGGGTGAAAAACGCTGATGTGAATGAGCTGCA < 41bp 0.74072400199485 0.361065043494852 0.857793 0.24275711 prediction 0.4814480039897 Functional Loss - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121215958 chr8:121215961 synonymous SNV . 0 24 hm5C_associated_SNPs_68926 0 0 1 0 1 COL14A1 chr8:121215948 3'AG 121215948 Downstream 14bp
chr2 66691281 66691281 1 + G T UCEC 66691278 + 66691258 66691298 41 TCATGATGACACGGCATCTACTCGTTCAGGAGGAACCCCAG TCATGATGACACGGCATCTACTCTTTCAGGAGGAACCCCAG < 41bp 0.740713943058399 0.356550596036249 0.14528057 0.026153177 prediction 0.481427886116798 Functional Loss - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66691278 chr2:66691281 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_68930 0 0 1 0 2 MEIS1 chr2:66691241 3'AG 66691241 Downstream 41bp
chr2 66691281 66691281 1 + G T UCEC 66691278 + 66691258 66691298 41 TCATGATGACACGGCATCTACTCGTTCAGGAGGAACCCCAG TCATGATGACACGGCATCTACTCTTTCAGGAGGAACCCCAG < 41bp 0.740713943058399 0.356550596036249 0.14528057 0.026153177 prediction 0.481427886116798 Functional Loss - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66691278 chr2:66691281 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_68930 0 0 1 0 2 MEIS1 chr2:66691352 5'GT 66691352 Upstream 72bp
chr2 209353827 209353827 1 + C T LUAD 209353825 + 209353805 209353845 41 TGCCTCACTCCTTCACTGGGCTCGGGTGGGAGATCCGCATG TGCCTCACTCCTTCACTGGGCTTGGGTGGGAGATCCGCATG < 41bp 0.802933187640774 0.562220193596966 0.13044396 0.16885534 prediction 0.481425988087616 Functional Loss - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209353825 chr2:209353827 synonymous SNV . 0 23 hm5C_associated_SNPs_68931 0 0 0 1 1 PTH2R chr2:209353875 5'GT 209353875 Upstream 49bp
chr19 52819203 52819203 1 + G C SKCM 52819199 + 52819179 52819219 41 TCAGATGGGAGGGAGTGCATCAAAGGTGTGAACACAGGTAA TCAGATGGGAGGGAGTGCATCAAACGTGTGAACACAGGTAA < 41bp 0.740708228732181 0.46026391956143 0.7494402 0.25003844 prediction 0.481416457464362 Functional Loss - ZNF480 ENSG00000198464 CDS Human protein_coding chr19:52819199 chr19:52819203 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_68933 0 0 1 0 1 ZNF480 chr19:52819215 5'GT 52819215 Upstream 13bp
chrX 153539540 153539540 1 + C T BLCA 153539538 + 153539518 153539558 41 GGCAGGCTTCTCAGGTGAAGCACAAGCCCACTGCTGTGGTG GGCAGGCTTCTCAGGTGAAGCATAAGCCCACTGCTGTGGTG < 41bp 0.81480959323942 0.574103629809589 0.29207626 0.19687861 prediction 0.481411926859663 Functional Loss - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153539538 chrX:153539540 synonymous SNV . 0 23 hm5C_associated_SNPs_68936 0 0 0 0 2 TKTL1 chrX:153539462 3'AG 153539462 Downstream 79bp
chrX 153539540 153539540 1 + C T BLCA 153539538 + 153539518 153539558 41 GGCAGGCTTCTCAGGTGAAGCACAAGCCCACTGCTGTGGTG GGCAGGCTTCTCAGGTGAAGCATAAGCCCACTGCTGTGGTG < 41bp 0.81480959323942 0.574103629809589 0.29207626 0.19687861 prediction 0.481411926859663 Functional Loss - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153539538 chrX:153539540 synonymous SNV . 0 23 hm5C_associated_SNPs_68936 0 0 0 0 2 TKTL1 chrX:153539589 5'GT 153539589 Upstream 50bp
chr1 3679974 3679974 1 + G T SARC 3679971 + 3679951 3679991 41 CTGGCCCAGCTGGAGGAGTACGAGCAGGTCATCCTGGACTT CTGGCCCAGCTGGAGGAGTACGATCAGGTCATCCTGGACTT < 41bp 0.740702476162222 0.336043677179554 0.8411037 0.2959042 prediction 0.481404952324445 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3679971 chr1:3679974 nonsynonymous SNV 0.139 3 24 hm5C_associated_SNPs_68937 0 0 0 0 1 CCDC27 chr1:3680038 5'GT 3680038 Upstream 65bp
chr11 66743072 66743072 1 + G C DLBC 66743068 + 66743048 66743088 41 CAGAGCAGCTGATCCAAGCCCAGCGAAGAGGCAGCCGGTGG CAGAGCAGCTGATCCAAGCCCAGCCAAGAGGCAGCCGGTGG < 41bp 0.825569844575963 0.584868069887074 0.7970331 0.54462385 prediction 0.48140354937778 Functional Loss - C11orf86 ENSG00000173237 CDS Human protein_coding chr11:66743068 chr11:66743072 nonsynonymous SNV 0.067 1 25 hm5C_associated_SNPs_68938 0 0 0 0 1 C11orf86 chr11:66743109 5'GT 66743109 Upstream 38bp
chr7 2638105 2638105 1 + G T COAD 2638102 + 2638082 2638122 41 CCTTCAATTTCCTGCAGGCCCAAGAGCTCCCAGCTCCCACT CCTTCAATTTCCTGCAGGCCCAATAGCTCCCAGCTCCCACT < 41bp 0.740701746996984 0.342113599309205 0.19909328 0.017109841 prediction 0.481403493993968 Functional Loss - IQCE ENSG00000106012 CDS Human protein_coding chr7:2638102 chr7:2638105 stopgain 0.763 0 24 hm5C_associated_SNPs_68939 0 0 0 0 1 IQCE chr7:2638099 3'AG 2638099 Downstream 7bp
chr19 19616204 19616204 1 + C T LUSC 19616202 + 19616182 19616222 41 CTGGCGGTGCACAAGAGCTCCTCGGCCGTGGACCGCCAGCG CTGGCGGTGCACAAGAGCTCCTTGGCCGTGGACCGCCAGCG < 41bp 0.740692048303513 0.483254449074579 0.3434619 0.26257446 prediction 0.481384096607025 Functional Loss - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19616202 chr19:19616204 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_68942 0 0 1 0 1 GATAD2A chr19:19616153 3'AG 19616153 Downstream 52bp
chr21 14414837 14414837 1 + G T ACC 14414835 + 14414815 14414855 41 TCTCGTAGGACTGCTCTACACTGGGCCTGTGCCAATGGCCA TCTCGTAGGACTGCTCTACACTTGGCCTGTGCCAATGGCCA < 41bp 0.740684170912288 0.416000353608785 0.28054807 0.17554268 prediction 0.481368341824576 Functional Loss - ANKRD30BP2 ENSG00000224309 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr21:14414835 chr21:14414837 . . 0 23 hm5C_associated_SNPs_68943 0 0 0 0 1 ANKRD30BP2 chr21:14414823 3'AG 14414823 Downstream 15bp
chr10 86014092 86014092 1 + A C COAD 86014088 + 86014068 86014108 41 CGCTCTCCCTGTAGAAACTTCACCAGCTTCCTCTTCACCAT CGCTCTCCCTGTAGAAACTTCACCCGCTTCCTCTTCACCAT < 41bp 0.740684153109318 0.310048979997249 0.12518263 0.068994105 prediction 0.481368306218636 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86014088 chr10:86014092 nonsynonymous SNV 0.843 4 25 hm5C_associated_SNPs_68944 0 0 0 0 1 RGR chr10:86014082 3'AG 86014082 Downstream 11bp
chr11 93808353 93808353 1 + A C STAD 93808352 + 93808332 93808372 41 ATCCTCAGGATTTGTGAAACCAGGGGCGCATGTTAAACCAG ATCCTCAGGATTTGTGAAACCCGGGGCGCATGTTAAACCAG < 41bp 0.740679734210502 0.483632688787897 0.92106855 0.86289716 prediction 0.481359468421003 Functional Loss - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93808352 chr11:93808353 synonymous SNV . 0 22 hm5C_associated_SNPs_68948 0 0 0 0 1 HEPHL1 chr11:93808340 3'AG 93808340 Downstream 14bp
chr17 16203244 16203244 1 + C T HNSC 16203242 + 16203222 16203262 41 GCATGCAGTGGGACACAGAGCACGTGGCCAGAGTCCTCCTT GCATGCAGTGGGACACAGAGCATGTGGCCAGAGTCCTCCTT < 41bp 0.803378504212902 0.562700042694743 0.25270748 0.22556248 prediction 0.481356923036317 Functional Loss - PIGL ENSG00000108474 CDS Human protein_coding chr17:16203242 chr17:16203244 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_68949 0 0 1 0 2 PIGL chr17:16203202 3'AG 16203202 Downstream 43bp
chr17 16203244 16203244 1 + C T HNSC 16203242 + 16203222 16203262 41 GCATGCAGTGGGACACAGAGCACGTGGCCAGAGTCCTCCTT GCATGCAGTGGGACACAGAGCATGTGGCCAGAGTCCTCCTT < 41bp 0.803378504212902 0.562700042694743 0.25270748 0.22556248 prediction 0.481356923036317 Functional Loss - PIGL ENSG00000108474 CDS Human protein_coding chr17:16203242 chr17:16203244 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_68949 0 0 1 0 2 PIGL chr17:16203292 5'GT 16203292 Upstream 49bp
chr11 68350579 68350579 1 + G T UCEC 68350577 + 68350557 68350597 41 TTAAAGAAACGGGTTTCTCACAGGATTCTTCTTTGCAGCAA TTAAAGAAACGGGTTTCTCACATGATTCTTCTTTGCAGCAA < 41bp 0.864442027971919 0.623764691047579 0.90244406 0.2862992 prediction 0.481354673848679 Functional Loss - PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68350577 chr11:68350579 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_68951 0 0 1 0 2 PPP6R3 chr11:68350511 3'AG 68350511 Downstream 69bp
chr11 68350579 68350579 1 + G T UCEC 68350577 + 68350557 68350597 41 TTAAAGAAACGGGTTTCTCACAGGATTCTTCTTTGCAGCAA TTAAAGAAACGGGTTTCTCACATGATTCTTCTTTGCAGCAA < 41bp 0.864442027971919 0.623764691047579 0.90244406 0.2862992 prediction 0.481354673848679 Functional Loss - PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68350577 chr11:68350579 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_68951 0 0 1 0 2 PPP6R3 chr11:68350597 5'GT 68350597 Upstream 19bp
chr9 127619155 127619155 1 + C T THYM 127619153 + 127619133 127619173 41 GCTGGCCAGCGCCGGCTATTCCCGCATGGTAACCACCCCGG GCTGGCCAGCGCCGGCTATTCCTGCATGGTAACCACCCCGG < 41bp 0.7468744487722 0.506197736153052 0.28669414 0.25587887 prediction 0.481353425238296 Functional Loss - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127619153 chr9:127619155 nonsynonymous SNV 0.237 2 23 hm5C_associated_SNPs_68952 0 0 0 0 1 WDR38 chr9:127619160 5'GT 127619160 Upstream 6bp
chr4 115597180 115597180 1 + C T UCEC 115597178 + 115597158 115597198 41 GGATAGATTATATTATTCGTCACAATGGAGCCCATCACCTA GGATAGATTATATTATTCGTCATAATGGAGCCCATCACCTA < 41bp 0.740668347880854 0.471296230400493 0.071392894 0.1339229 prediction 0.481336695761708 Functional Loss - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115597178 chr4:115597180 synonymous SNV . 0 23 hm5C_associated_SNPs_68956 0 0 0 2 1 UGT8 chr4:115597081 3'AG 115597081 Downstream 100bp
chr1 155182303 155182303 1 + T C STAD 155182302 + 155182282 155182322 41 AGCGGCAGTACATGGAACGGCTACAGCTGCTGACTGGGGAG AGCGGCAGTACATGGAACGGCCACAGCTGCTGACTGGGGAG < 41bp 0.740668278352203 0.483694335358938 0.32833403 0.29005736 prediction 0.481336556704407 Functional Loss - MTX1 ENSG00000173171 CDS Human protein_coding chr1:155182302 chr1:155182303 nonsynonymous SNV 0.968 4 22 hm5C_associated_SNPs_68958 0 0 0 0 1 MTX1 chr1:155182358 5'GT 155182358 Upstream 56bp
chrX 128888527 128888527 1 + C T rs61733002 128888525 + 128888505 128888545 41 AAAGGCACAGTGGATGAGTTCTCGGGGGCAGAGATCGTGGA AAAGGCACAGTGGATGAGTTCTTGGGGGCAGAGATCGTGGA < 41bp 0.830279850402201 0.58961200200278 0.28866842 0.23681185 prediction 0.481335696798842 Functional Loss - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128888525 chrX:128888527 nonsynonymous SNV 0.390 2 23 hm5C_associated_SNPs_68959 0 0 0 0 1 XPNPEP2 chrX:128888448 3'AG 128888448 Downstream 80bp
chr11 64088252 64088252 1 + G T rs142314160 64088249 + 64088229 64088269 41 GGCGAGTGGGGCCGAGCCCACAAGGCGGAAGGCAAGGTGAG GGCGAGTGGGGCCGAGCCCACAATGCGGAAGGCAAGGTGAG < 41bp 0.740665784284845 0.338430575931022 0.88801956 0.44145694 prediction 0.481331568569689 Functional Loss - PRDX5 ENSG00000126432 CDS Human protein_coding chr11:64088249 chr11:64088252 nonsynonymous SNV 0.900 0 24 hm5C_associated_SNPs_68960 0 0 1 0 1 PRDX5 chr11:64088264 5'GT 64088264 Upstream 13bp
chr19 17611419 17611419 1 + G A rs188376321 17611416 + 17611396 17611436 41 ATCGCCCACAGCGTCTTCAGCAAGGGCGACAGCGCCTACCT ATCGCCCACAGCGTCTTCAGCAAAGGCGACAGCGCCTACCT < 41bp 0.778516619492268 0.537851441501619 0.9247837 0.8226286 prediction 0.481330355981299 Functional Loss - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17611416 chr19:17611419 synonymous SNV . 0 24 hm5C_associated_SNPs_68961 0 0 1 0 1 SLC27A1 chr19:17611441 5'GT 17611441 Upstream 23bp
chr6 26385325 26385325 1 + C T rs150302333 26385323 + 26385303 26385343 41 CATTACGCTGCCATCTGTCACCCGAGAAAAATGCTGAGGAC CATTACGCTGCCATCTGTCACCTGAGAAAAATGCTGAGGAC < 41bp 0.740664092071142 0.466818359412576 0.7956209 0.55611014 prediction 0.481328184142284 Functional Loss - BTN2A2 ENSG00000124508 CDS Human protein_coding chr6:26385323 chr6:26385325 synonymous SNV . 0 23 hm5C_associated_SNPs_68962 0 0 0 0 1 BTN2A2 chr6:26385243 3'AG 26385243 Downstream 83bp
chr16 19492748 19492748 1 + G T LGG 19492746 + 19492726 19492766 41 CTTCAGGAGTTTGACATTGCCAGGAACGTTCTAGAACTGAT CTTCAGGAGTTTGACATTGCCATGAACGTTCTAGAACTGAT < 41bp 0.740649046671672 0.403233678422844 0.8677324 0.3631413 prediction 0.481298093343344 Functional Loss - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19492746 chr16:19492748 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_68966 0 0 0 0 2 TMC5 chr16:19492692 3'AG 19492692 Downstream 57bp
chr16 19492748 19492748 1 + G T LGG 19492746 + 19492726 19492766 41 CTTCAGGAGTTTGACATTGCCAGGAACGTTCTAGAACTGAT CTTCAGGAGTTTGACATTGCCATGAACGTTCTAGAACTGAT < 41bp 0.740649046671672 0.403233678422844 0.8677324 0.3631413 prediction 0.481298093343344 Functional Loss - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19492746 chr16:19492748 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_68966 0 0 0 0 2 TMC5 chr16:19492787 5'GT 19492787 Upstream 40bp
chr19 35510426 35510426 1 + G A rs147684177 35510423 + 35510403 35510443 41 ATCCTGGGTCTGGCCCGGAACAAGGCGCGGCTCCGGTGAGT ATCCTGGGTCTGGCCCGGAACAAAGCGCGGCTCCGGTGAGT < 41bp 0.772919346098 0.53227615192678 0.90889084 0.6316828 prediction 0.481286388342438 Functional Loss - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35510423 chr19:35510426 synonymous SNV . 0 24 hm5C_associated_SNPs_68969 0 0 1 0 1 GRAMD1A chr19:35510437 5'GT 35510437 Upstream 12bp
chr15 42120356 42120356 1 + G C SARC 42120355 + 42120335 42120375 41 GCTTTGGAAGCCGTGCGGAGCGAGTTACGAGAATTCCCGGC GCTTTGGAAGCCGTGCGGAGCCAGTTACGAGAATTCCCGGC < 41bp 0.740641094136918 0.431149281707494 0.7507076 0.65142524 prediction 0.481282188273836 Functional Loss - JMJD7;JMJD7-PLA2G4B ENSG00000168970;ENSG00000243708;ENSG00000243789 CDS Human other chr15:42120355 chr15:42120356 nonsynonymous SNV 0.286 0 22 hm5C_associated_SNPs_68970 0 0 1 0 1 JMJD7;JMJD7-PLA2G4B chr15:42120386 5'GT 42120386 Upstream 31bp
chr6 43403606 43403606 1 + G A OV 43403603 + 43403583 43403623 41 TGGACCGGATCCAGCTTTTCCTCGACCTTCCAAACCACAAC TGGACCGGATCCAGCTTTTCCTCAACCTTCCAAACCACAAC < 41bp 0.743137956112719 0.502504324168302 0.04866436 0.07039294 prediction 0.481267263888834 Functional Loss - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43403603 chr6:43403606 nonsynonymous SNV 0.979 2 24 hm5C_associated_SNPs_68972 0 0 0 0 1 ABCC10 chr6:43403645 5'GT 43403645 Upstream 40bp
chrX 149809756 149809756 1 + C T UCEC 149809754 + 149809734 149809774 41 CCTCACAGGGCTTGCCCAATCACCATTGGAGAATAACTTTT CCTCACAGGGCTTGCCCAATCATCATTGGAGAATAACTTTT < 41bp 0.843380028472104 0.602746570308993 0.0438326 0.03309703 prediction 0.481266916326221 Functional Loss - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149809754 chrX:149809756 synonymous SNV . 0 23 hm5C_associated_SNPs_68973 0 0 1 0 1 MTM1 chrX:149809742 3'AG 149809742 Downstream 15bp
chr20 44330835 44330835 1 + A C BLCA 44330834 + 44330814 44330854 41 CAGCTGGTGCCTGGGAGTCCCAAGCAGCGTGTTCTGAGTAG CAGCTGGTGCCTGGGAGTCCCCAGCAGCGTGTTCTGAGTAG < 41bp 0.740627203156201 0.493020675134402 0.26662606 0.23688912 prediction 0.481254406312403 Functional Loss - WFDC13 ENSG00000168634 CDS Human protein_coding chr20:44330834 chr20:44330835 nonsynonymous SNV 0.048 3 22 hm5C_associated_SNPs_68975 0 0 0 0 1 WFDC13 chr20:44330850 5'GT 44330850 Upstream 16bp
chr16 11001931 11001931 1 + T C STAD 11001930 + 11001910 11001950 41 CGGCGGGCCAAGACTTCTCCCTGGACCTCCGCAGCACTGGC CGGCGGGCCAAGACTTCTCCCCGGACCTCCGCAGCACTGGC < 41bp 0.747950051857782 0.507322859906929 0.040911645 0.11112377 prediction 0.481254383901705 Functional Loss - CIITA ENSG00000179583 CDS Human protein_coding chr16:11001930 chr16:11001931 nonsynonymous SNV 0.925 4 22 hm5C_associated_SNPs_68976 0 0 0 0 1 CIITA chr16:11002006 5'GT 11002006 Upstream 76bp
chr19 38778547 38778547 1 + G T LUSC 38778544 + 38778524 38778564 41 ACGGGTGACCTGGCCACCAGCAGGAATGCAGCGGATTCCTC ACGGGTGACCTGGCCACCAGCAGTAATGCAGCGGATTCCTC < 41bp 0.926181765825707 0.685558225383405 0.86759067 0.46903417 prediction 0.481247080884604 Functional Loss - SPINT2 ENSG00000167642 CDS Human protein_coding chr19:38778544 chr19:38778547 nonsynonymous SNV 0.840 0 24 hm5C_associated_SNPs_68977 0 0 0 0 2 SPINT2 chr19:38778516 3'AG 38778516 Downstream 32bp
chr19 38778547 38778547 1 + G T LUSC 38778544 + 38778524 38778564 41 ACGGGTGACCTGGCCACCAGCAGGAATGCAGCGGATTCCTC ACGGGTGACCTGGCCACCAGCAGTAATGCAGCGGATTCCTC < 41bp 0.926181765825707 0.685558225383405 0.86759067 0.46903417 prediction 0.481247080884604 Functional Loss - SPINT2 ENSG00000167642 CDS Human protein_coding chr19:38778544 chr19:38778547 nonsynonymous SNV 0.840 0 24 hm5C_associated_SNPs_68977 0 0 0 0 2 SPINT2 chr19:38778575 5'GT 38778575 Upstream 29bp
chr11 75442241 75442241 1 + C T COAD 75442239 + 75442219 75442259 41 AGGAGGAGGTGAACCAGCTGCACCAGCGTTATATCAAAGAG AGGAGGAGGTGAACCAGCTGCATCAGCGTTATATCAAAGAG < 41bp 0.792348967211998 0.551742294032208 0.7014239 0.5319733 prediction 0.48121334635958 Functional Loss - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75442239 chr11:75442241 synonymous SNV . 0 23 hm5C_associated_SNPs_68980 0 0 0 0 1 MOGAT2 chr11:75442177 3'AG 75442177 Downstream 65bp
chr3 45072372 45072372 1 + G A UCEC 45072369 + 45072349 45072389 41 TCAAGAGCCGTCTGGACACCCTGGCCCAGGAGGTGGCCCTG TCAAGAGCCGTCTGGACACCCTGACCCAGGAGGTGGCCCTG < 41bp 0.740604397591104 0.498785325206306 0.31329685 0.08733985 prediction 0.481208795182207 Functional Loss - CLEC3B ENSG00000163815 CDS Human protein_coding chr3:45072369 chr3:45072372 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_68981 0 0 1 0 2 CLEC3B chr3:45072319 3'AG 45072319 Downstream 54bp
chr3 45072372 45072372 1 + G A UCEC 45072369 + 45072349 45072389 41 TCAAGAGCCGTCTGGACACCCTGGCCCAGGAGGTGGCCCTG TCAAGAGCCGTCTGGACACCCTGACCCAGGAGGTGGCCCTG < 41bp 0.740604397591104 0.498785325206306 0.31329685 0.08733985 prediction 0.481208795182207 Functional Loss - CLEC3B ENSG00000163815 CDS Human protein_coding chr3:45072369 chr3:45072372 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_68981 0 0 1 0 2 CLEC3B chr3:45072417 5'GT 45072417 Upstream 46bp
chr10 70992653 70992653 1 + C T UCEC 70992651 + 70992631 70992671 41 CAACGCCCAATGAAATCATCCGCGGGAACGGCACAGAGGTA CAACGCCCAATGAAATCATCCGTGGGAACGGCACAGAGGTA < 41bp 0.740604328243716 0.488851132661249 0.28871542 0.29215062 prediction 0.481208656487432 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:70992651 chr10:70992653 synonymous SNV . 0 23 hm5C_associated_SNPs_68982 0 0 0 0 1 HKDC1 chr10:70992668 5'GT 70992668 Upstream 16bp
chr10 73121771 73121771 1 + G A SKCM 73121768 + 73121748 73121788 41 TCTGGTGAAGAGGAGCTTCCCCAGGACTCCCTCAGTGCCCC TCTGGTGAAGAGGAGCTTCCCCAAGACTCCCTCAGTGCCCC < 41bp 0.749688669469184 0.509087868977741 0.34223747 0.37951854 prediction 0.481201600982886 Functional Loss - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73121768 chr10:73121771 synonymous SNV . 0 24 hm5C_associated_SNPs_68983 0 0 0 0 1 SLC29A3 chr10:73121711 3'AG 73121711 Downstream 61bp
chr5 148682070 148682070 1 + T C LIHC 148682069 + 148682049 148682089 41 TCTGGGACCCGGCAAGTCGCCTGAGTACATCAGCTCCCACA TCTGGGACCCGGCAAGTCGCCCGAGTACATCAGCTCCCACA < 41bp 0.747116680771291 0.50652180344855 0.124209404 0.2164886 prediction 0.481189754645483 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148682069 chr5:148682070 synonymous SNV . 0 22 hm5C_associated_SNPs_68986 0 0 1 0 2 AFAP1L1 chr5:148681981 3'AG 148681981 Downstream 90bp
chr5 148682070 148682070 1 + T C LIHC 148682069 + 148682049 148682089 41 TCTGGGACCCGGCAAGTCGCCTGAGTACATCAGCTCCCACA TCTGGGACCCGGCAAGTCGCCCGAGTACATCAGCTCCCACA < 41bp 0.747116680771291 0.50652180344855 0.124209404 0.2164886 prediction 0.481189754645483 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148682069 chr5:148682070 synonymous SNV . 0 22 hm5C_associated_SNPs_68986 0 0 1 0 2 AFAP1L1 chr5:148682089 5'GT 148682089 Upstream 20bp
chr7 86813796 86813796 1 + C T BLCA 86813794 + 86813774 86813814 41 TGAGCCAGGTGACATAGTCACACAGGGTGTGTCTTGGGCAG TGAGCCAGGTGACATAGTCACATAGGGTGTGTCTTGGGCAG < 41bp 0.812396292109414 0.571803598194546 0.41688552 0.7129771 prediction 0.481185387829737 Functional Loss - DMTF1 ENSG00000135164 CDS Human protein_coding chr7:86813794 chr7:86813796 stopgain 1.000 1 23 hm5C_associated_SNPs_68988 0 0 1 0 1 DMTF1 chr7:86813713 3'AG 86813713 Downstream 84bp
chr4 77177656 77177656 1 + G T UCEC 77177653 + 77177633 77177673 41 CCTTAGCGCTCTACCTGAATCTGGAAGAAGCTATGCCCATA CCTTAGCGCTCTACCTGAATCTGTAAGAAGCTATGCCCATA < 41bp 0.915077702537478 0.674495231695838 0.71870226 0.16441259 prediction 0.481164941683281 Functional Loss - FAM47E;FAM47E-STBD1 ENSG00000189157;ENSG00000272414 CDS Human other chr4:77177653 chr4:77177656 stopgain 0.018 0 24 hm5C_associated_SNPs_68990 0 0 0 0 1 FAM47E;FAM47E-STBD1 chr4:77177676 5'GT 77177676 Upstream 21bp
chr17 41365910 41365910 1 + C T UCEC 41365908 + 41365888 41365928 41 CAGAGGCTGAAGCCCAAGCACACGTAAGCCCCCCTTCCTCC CAGAGGCTGAAGCCCAAGCACATGTAAGCCCCCCTTCCTCC < 41bp 0.786046731600643 0.545467950228018 0.20906535 0.26785964 prediction 0.481157562745251 Functional Loss - TMEM106A ENSG00000184988 CDS Human protein_coding chr17:41365908 chr17:41365910 nonsynonymous SNV 0.859 4 23 hm5C_associated_SNPs_68991 0 0 1 0 2 TMEM106A chr17:41365847 3'AG 41365847 Downstream 64bp
chr17 41365910 41365910 1 + C T UCEC 41365908 + 41365888 41365928 41 CAGAGGCTGAAGCCCAAGCACACGTAAGCCCCCCTTCCTCC CAGAGGCTGAAGCCCAAGCACATGTAAGCCCCCCTTCCTCC < 41bp 0.786046731600643 0.545467950228018 0.20906535 0.26785964 prediction 0.481157562745251 Functional Loss - TMEM106A ENSG00000184988 CDS Human protein_coding chr17:41365908 chr17:41365910 nonsynonymous SNV 0.859 4 23 hm5C_associated_SNPs_68991 0 0 1 0 2 TMEM106A chr17:41365910 5'GT 41365910 Upstream 1bp
chr22 25264389 25264389 1 + G A SKCM 25264386 + 25264366 25264406 41 TTGGTCAGCCAGGACGGGATCCAGAGGCCGCCCTTCCGCTT TTGGTCAGCCAGGACGGGATCCAAAGGCCGCCCTTCCGCTT < 41bp 0.750150057637261 0.509572430572213 0.9153563 0.7189457 prediction 0.481155254130095 Functional Loss - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25264386 chr22:25264389 synonymous SNV . 0 24 hm5C_associated_SNPs_68993 0 0 0 0 1 SGSM1 chr22:25264343 3'AG 25264343 Downstream 47bp
chr19 50957558 50957558 1 + C T CESC 50957556 + 50957536 50957576 41 CCGGAGGCTGTGCGCATCACCTCGGTTGGAGAGGATTGGGC CCGGAGGCTGTGCGCATCACCTTGGTTGGAGAGGATTGGGC < 41bp 0.817515876534372 0.576943465143609 0.4383152 0.1446265 prediction 0.481144822781528 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957556 chr19:50957558 nonsynonymous SNV 0.690 1 23 hm5C_associated_SNPs_68996 0 0 0 0 2 MYBPC2 chr19:50957522 3'AG 50957522 Downstream 37bp
chr19 50957558 50957558 1 + C T CESC 50957556 + 50957536 50957576 41 CCGGAGGCTGTGCGCATCACCTCGGTTGGAGAGGATTGGGC CCGGAGGCTGTGCGCATCACCTTGGTTGGAGAGGATTGGGC < 41bp 0.817515876534372 0.576943465143609 0.4383152 0.1446265 prediction 0.481144822781528 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957556 chr19:50957558 nonsynonymous SNV 0.690 1 23 hm5C_associated_SNPs_68996 0 0 0 0 2 MYBPC2 chr19:50957626 5'GT 50957626 Upstream 69bp
chr19 17649991 17649991 1 + G A GBM 17649988 + 17649968 17650008 41 GAAGCCAGGCCCCTGCTGCCCGGGCCTTCCTGGACGCCGTC GAAGCCAGGCCCCTGCTGCCCGGACCTTCCTGGACGCCGTC < 41bp 0.7405705283741 0.496317352718944 0.90247554 0.40627307 prediction 0.4811410567482 Functional Loss - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17649988 chr19:17649991 nonsynonymous SNV 0.978 2 24 hm5C_associated_SNPs_68997 0 0 0 0 1 FAM129C chr19:17650074 5'GT 17650074 Upstream 84bp
chr16 2578249 2578249 1 + G A READ 2578246 + 2578226 2578266 41 CCCCTGCCCAGTTCCACCACCGCGACCCAGGCATCGTGGGG CCCCTGCCCAGTTCCACCACCGCAACCCAGGCATCGTGGGG < 41bp 0.740565621839988 0.499718333670978 0.20115274 0.20803052 prediction 0.481131243679977 Functional Loss - AMDHD2 ENSG00000162066 CDS Human protein_coding chr16:2578246 chr16:2578249 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_68998 0 0 1 0 1 AMDHD2 chr16:2578237 3'AG 2578237 Downstream 13bp
chr19 36122274 36122274 1 + G T UCEC 36122271 + 36122251 36122291 41 ATCGGAGTCACCTGGACAGCCCAGAGGCTCGAGAAGCCATG ATCGGAGTCACCTGGACAGCCCATAGGCTCGAGAAGCCATG < 41bp 0.740564900440541 0.343121047792898 0.21441135 0.08837134 prediction 0.481129800881083 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36122271 chr19:36122274 stopgain 0.999 0 24 hm5C_associated_SNPs_68999 0 0 1 0 2 RBM42 chr19:36122233 3'AG 36122233 Downstream 42bp
chr19 36122274 36122274 1 + G T UCEC 36122271 + 36122251 36122291 41 ATCGGAGTCACCTGGACAGCCCAGAGGCTCGAGAAGCCATG ATCGGAGTCACCTGGACAGCCCATAGGCTCGAGAAGCCATG < 41bp 0.740564900440541 0.343121047792898 0.21441135 0.08837134 prediction 0.481129800881083 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36122271 chr19:36122274 stopgain 0.999 0 24 hm5C_associated_SNPs_68999 0 0 1 0 2 RBM42 chr19:36122307 5'GT 36122307 Upstream 34bp
chr1 55158208 55158208 1 + C T rs2304313 55158206 + 55158186 55158226 41 TCATGGAGCAGGTGGAGAGCCACCACCGCGGAGTGGCCTTG TCATGGAGCAGGTGGAGAGCCATCACCGCGGAGTGGCCTTG < 41bp 0.824626082852219 0.58406435113571 0.44975474 0.36911118 prediction 0.481123463433018 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55158206 chr1:55158208 synonymous SNV . 0 23 hm5C_associated_SNPs_69000 0 0 0 0 1 MROH7 chr1:55158234 5'GT 55158234 Upstream 27bp
chr11 57317501 57317501 1 + C T rs140291472 57317499 + 57317479 57317519 41 ACATGGTGCGGTTGGCTGTGCCCGACTCCAAGTGCGTCTAC ACATGGTGCGGTTGGCTGTGCCTGACTCCAAGTGCGTCTAC < 41bp 0.790270739169086 0.549709366748537 0.018154562 0.019057304 prediction 0.481122744841098 Functional Loss - SMTNL1 ENSG00000214872 CDS Human protein_coding chr11:57317499 chr11:57317501 synonymous SNV . 0 23 hm5C_associated_SNPs_69001 0 0 0 0 1 SMTNL1 chr11:57317441 3'AG 57317441 Downstream 61bp
chr14 105911845 105911845 1 + G A UCEC 105911842 + 105911822 105911862 41 TCATCGCCCTGGCCGACAAGCACGCAAGTGAGTCCGGCCTT TCATCGCCCTGGCCGACAAGCACACAAGTGAGTCCGGCCTT < 41bp 0.755797945700211 0.515237195083186 0.22666147 0.13141462 prediction 0.48112150123405 Functional Loss - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105911842 chr14:105911845 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_69002 0 0 1 0 2 MTA1 chr14:105911755 3'AG 105911755 Downstream 91bp
chr14 105911845 105911845 1 + G A UCEC 105911842 + 105911822 105911862 41 TCATCGCCCTGGCCGACAAGCACGCAAGTGAGTCCGGCCTT TCATCGCCCTGGCCGACAAGCACACAAGTGAGTCCGGCCTT < 41bp 0.755797945700211 0.515237195083186 0.22666147 0.13141462 prediction 0.48112150123405 Functional Loss - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105911842 chr14:105911845 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_69002 0 0 1 0 2 MTA1 chr14:105911848 5'GT 105911848 Upstream 4bp
chr1 32542820 32542820 1 + G A COAD 32542817 + 32542797 32542837 41 CTCCATCCTGCTGTTCCTCACTCGCTTCACCGTTCTCACGG CTCCATCCTGCTGTTCCTCACTCACTTCACCGTTCTCACGG < 41bp 0.740560501553618 0.497012864946662 0.36274624 0.11435777 prediction 0.481121003107235 Functional Loss - TMEM39B ENSG00000121775 CDS Human protein_coding chr1:32542817 chr1:32542820 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_69003 0 0 1 0 2 TMEM39B chr1:32542765 3'AG 32542765 Downstream 56bp
chr1 32542820 32542820 1 + G A COAD 32542817 + 32542797 32542837 41 CTCCATCCTGCTGTTCCTCACTCGCTTCACCGTTCTCACGG CTCCATCCTGCTGTTCCTCACTCACTTCACCGTTCTCACGG < 41bp 0.740560501553618 0.497012864946662 0.36274624 0.11435777 prediction 0.481121003107235 Functional Loss - TMEM39B ENSG00000121775 CDS Human protein_coding chr1:32542817 chr1:32542820 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_69003 0 0 1 0 2 TMEM39B chr1:32542919 5'GT 32542919 Upstream 100bp
chr5 10649419 10649419 1 + C T rs554040804 10649417 + 10649397 10649437 41 GGACCCCCGCCGTGGGATGTCGCCGCAGGAGTGGGCCACTT GGACCCCCGCCGTGGGATGTCGTCGCAGGAGTGGGCCACTT < 41bp 0.778132277035581 0.537575295784864 0.88485754 0.58480126 prediction 0.481113962501434 Functional Loss - ANKRD33B ENSG00000164236 CDS Human protein_coding chr5:10649417 chr5:10649419 nonsynonymous SNV 0.458 0 23 hm5C_associated_SNPs_69005 0 0 0 0 1 ANKRD33B chr5:10649378 3'AG 10649378 Downstream 42bp
chr14 20925201 20925201 1 + C T BLCA 20925199 + 20925179 20925219 41 GTGATTGTGGCTGAATTTGACTCGTTTGTGCTGGTAACAGC GTGATTGTGGCTGAATTTGACTTGTTTGTGCTGGTAACAGC < 41bp 0.809824693368073 0.569269628790259 0.3655541 0.20373616 prediction 0.481110129155628 Functional Loss - APEX1 ENSG00000100823 CDS Human protein_coding chr14:20925199 chr14:20925201 nonsynonymous SNV 0.505 0 23 hm5C_associated_SNPs_69006 0 0 1 0 1 APEX1 chr14:20925150 3'AG 20925150 Downstream 52bp
chr3 148558536 148558536 1 + A C LUSC 148558535 + 148558515 148558555 41 TGATAGCCGGGTTCGTGCAACAGGACACAGTTATGAGAAGT TGATAGCCGGGTTCGTGCAACCGGACACAGTTATGAGAAGT < 41bp 0.801678409658202 0.561124033220797 0.40363476 0.30186528 prediction 0.481108752874811 Functional Loss - CPB1 ENSG00000153002 CDS Human protein_coding chr3:148558535 chr3:148558536 synonymous SNV . 0 22 hm5C_associated_SNPs_69007 0 0 0 0 1 CPB1 chr3:148558572 5'GT 148558572 Upstream 37bp
chr7 76121570 76121570 1 + G T LUSC 76121568 + 76121548 76121588 41 CAGAGTCCAGCAGGCGCTCGCAGGTAGGTGCCTGACCTCGG CAGAGTCCAGCAGGCGCTCGCATGTAGGTGCCTGACCTCGG < 41bp 0.740544985277412 0.385477573278885 0.8997159 0.6686626 prediction 0.481089970554824 Functional Loss - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76121568 chr7:76121570 stopgain 0.872 2 23 hm5C_associated_SNPs_69009 0 0 1 0 1 DTX2 chr7:76121570 5'GT 76121570 Upstream 1bp
chr11 65631116 65631116 1 + C T UCEC 65631114 + 65631094 65631134 41 TCCGAGAGCTACAGCGGCTGCACGTGACCCACACGGTGCGC TCCGAGAGCTACAGCGGCTGCATGTGACCCACACGGTGCGC < 41bp 0.796808366719404 0.556265459109156 0.4045058 0.26098058 prediction 0.481085815220496 Functional Loss - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65631114 chr11:65631116 synonymous SNV . 0 23 hm5C_associated_SNPs_69011 0 0 1 0 2 MUS81 chr11:65631071 3'AG 65631071 Downstream 46bp
chr11 65631116 65631116 1 + C T UCEC 65631114 + 65631094 65631134 41 TCCGAGAGCTACAGCGGCTGCACGTGACCCACACGGTGCGC TCCGAGAGCTACAGCGGCTGCATGTGACCCACACGGTGCGC < 41bp 0.796808366719404 0.556265459109156 0.4045058 0.26098058 prediction 0.481085815220496 Functional Loss - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65631114 chr11:65631116 synonymous SNV . 0 23 hm5C_associated_SNPs_69011 0 0 1 0 2 MUS81 chr11:65631192 5'GT 65631192 Upstream 77bp
chr19 39898449 39898449 1 + G A HNSC 39898446 + 39898426 39898466 41 ATGGAGGGACTGAGTCCAGCCCAGGCTGGGGCTCCTCGGGA ATGGAGGGACTGAGTCCAGCCCAAGCTGGGGCTCCTCGGGA < 41bp 0.740539833688652 0.493012314800654 0.23079982 0.18818098 prediction 0.481079667377305 Functional Loss - ZFP36 ENSG00000128016 CDS Human other chr19:39898446 chr19:39898449 nonsynonymous SNV 0.058 0 24 hm5C_associated_SNPs_69012 0 0 0 0 1 ZFP36 chr19:39898383 3'AG 39898383 Downstream 67bp
chr2 219292714 219292714 1 + G A UCEC 219292711 + 219292691 219292731 41 CCGGAAAGGGGGCGTGGCTTCTGGCATGAAGCACGTGGAGA CCGGAAAGGGGGCGTGGCTTCTGACATGAAGCACGTGGAGA < 41bp 0.740533355134575 0.493708327438222 0.3927471 0.1952672 prediction 0.481066710269151 Functional Loss - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219292711 chr2:219292714 nonsynonymous SNV 0.040 3 24 hm5C_associated_SNPs_69014 0 0 1 0 2 VIL1 chr2:219292688 3'AG 219292688 Downstream 27bp
chr2 219292714 219292714 1 + G A UCEC 219292711 + 219292691 219292731 41 CCGGAAAGGGGGCGTGGCTTCTGGCATGAAGCACGTGGAGA CCGGAAAGGGGGCGTGGCTTCTGACATGAAGCACGTGGAGA < 41bp 0.740533355134575 0.493708327438222 0.3927471 0.1952672 prediction 0.481066710269151 Functional Loss - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219292711 chr2:219292714 nonsynonymous SNV 0.040 3 24 hm5C_associated_SNPs_69014 0 0 1 0 2 VIL1 chr2:219292796 5'GT 219292796 Upstream 83bp
chr10 54074812 54074812 1 + G A UCEC 54074809 + 54074789 54074829 41 GCCGAAAACGCTGCATGCGTCACGCTATGTGCTGCCCCGGG GCCGAAAACGCTGCATGCGTCACACTATGTGCTGCCCCGGG < 41bp 0.743899916879791 0.503368034067807 0.2656945 0.053855896 prediction 0.481063765623968 Functional Loss - DKK1 ENSG00000107984 CDS Human protein_coding chr10:54074809 chr10:54074812 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_69015 0 0 1 0 1 DKK1 chr10:54074845 5'GT 54074845 Upstream 34bp
chr2 242741364 242741364 1 + G T UCEC 242741361 + 242741341 242741381 41 CGCGTCCACCTGGGCTACCCCTGGCTCTTCCTGGCGCGCTA CGCGTCCACCTGGGCTACCCCTGTCTCTTCCTGGCGCGCTA < 41bp 0.740523572605485 0.348364822410305 0.44053614 0.38535386 prediction 0.481047145210971 Functional Loss - GAL3ST2 ENSG00000154252 CDS Human protein_coding chr2:242741361 chr2:242741364 nonsynonymous SNV 0.038 1 24 hm5C_associated_SNPs_69018 0 0 0 0 1 GAL3ST2 chr2:242741451 5'GT 242741451 Upstream 88bp
chr11 65305955 65305955 1 + G C LUAD 65305954 + 65305934 65305974 41 CCCGGAAGAAGCGCGAGGAGCGGCGGCGGGAGATGGAGGCC CCCGGAAGAAGCGCGAGGAGCCGCGGCGGGAGATGGAGGCC < 41bp 0.861418814343009 0.62090215696541 0.9028053 0.7742436 prediction 0.481033314755198 Functional Loss - SCYL1 ENSG00000142186 CDS Human protein_coding chr11:65305954 chr11:65305955 nonsynonymous SNV 0.807 4 22 hm5C_associated_SNPs_69019 0 0 1 0 1 SCYL1 chr11:65305913 3'AG 65305913 Downstream 43bp
chr12 7310610 7310610 1 + C T rs146012265 7310608 + 7310588 7310628 41 GAGGATGAGGACAGCAGTGACTCGGAGGTGGCCGATTCCCC GAGGATGAGGACAGCAGTGACTTGGAGGTGGCCGATTCCCC < 41bp 0.740516034653038 0.477052949171791 0.19187266 0.29639283 prediction 0.481032069306075 Functional Loss - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7310608 chr12:7310610 nonsynonymous SNV 0.949 0 23 hm5C_associated_SNPs_69020 0 0 1 0 1 CLSTN3 chr12:7310537 3'AG 7310537 Downstream 74bp
chr19 34884674 34884674 1 + A C rs143733383 34884670 + 34884650 34884690 41 CAGCTGCTCTCGGGGGCTCACTGGATGGTGAGTGCTGAGGC CAGCTGCTCTCGGGGGCTCACTGGCTGGTGAGTGCTGAGGC < 41bp 0.930247600870713 0.689743469220451 0.9317881 0.36631078 prediction 0.481008263300523 Functional Loss - GPI ENSG00000105220 CDS Human protein_coding chr19:34884670 chr19:34884674 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_69024 0 0 1 0 2 GPI chr19:34884633 3'AG 34884633 Downstream 42bp
chr19 34884674 34884674 1 + A C rs143733383 34884670 + 34884650 34884690 41 CAGCTGCTCTCGGGGGCTCACTGGATGGTGAGTGCTGAGGC CAGCTGCTCTCGGGGGCTCACTGGCTGGTGAGTGCTGAGGC < 41bp 0.930247600870713 0.689743469220451 0.9317881 0.36631078 prediction 0.481008263300523 Functional Loss - GPI ENSG00000105220 CDS Human protein_coding chr19:34884670 chr19:34884674 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_69024 0 0 1 0 2 GPI chr19:34884676 5'GT 34884676 Upstream 3bp
chr12 85674213 85674213 1 + C T HNSC 85674211 + 85674191 85674231 41 AGGCCTTCGGACCCCTGCCCCGCGCCGAGCATCACGTGCGC AGGCCTTCGGACCCCTGCCCCGTGCCGAGCATCACGTGCGC < 41bp 0.771815067289793 0.531311569905068 0.39402002 0.3671087 prediction 0.48100699476945 Functional Loss - ALX1 ENSG00000180318 CDS Human protein_coding chr12:85674211 chr12:85674213 synonymous SNV . 0 23 hm5C_associated_SNPs_69025 0 0 0 0 1 ALX1 chr12:85674265 5'GT 85674265 Upstream 53bp
chr12 7066930 7066930 1 + G T PAAD 7066928 + 7066908 7066948 41 AATACAAACTCCGTACCTTACAGGTCTCCCCGCTGGACAAT AATACAAACTCCGTACCTTACATGTCTCCCCGCTGGACAAT < 41bp 0.74049693484088 0.375840978672878 0.2600116 0.106022656 prediction 0.480993869681759 Functional Loss - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7066928 chr12:7066930 nonsynonymous SNV 0.686 1 23 hm5C_associated_SNPs_69027 0 0 0 0 1 PTPN6 chr12:7066948 5'GT 7066948 Upstream 19bp
chr9 131286073 131286073 1 + G A STAD 131286070 + 131286050 131286090 41 CGACCTGGCTGCCTTCCAGACCCGAGGCAACCAGCTGTGCA CGACCTGGCTGCCTTCCAGACCCAAGGCAACCAGCTGTGCA < 41bp 0.746897538747821 0.506409498585731 0.37989455 0.3346296 prediction 0.480976080324181 Functional Loss - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131286070 chr9:131286073 nonsynonymous SNV 0.774 1 24 hm5C_associated_SNPs_69030 0 0 0 0 1 GLE1 chr9:131286125 5'GT 131286125 Upstream 53bp
chr1 3102981 3102981 1 + G T STAD 3102979 + 3102959 3102999 41 AGATGGAAGCCGGGGAGAGGCTGGGCCCCTGCGTGGTGGTG AGATGGAAGCCGGGGAGAGGCTTGGCCCCTGCGTGGTGGTG < 41bp 0.740484245835898 0.411912296703024 0.87825227 0.56222594 prediction 0.480968491671796 Functional Loss - PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3102979 chr1:3102981 synonymous SNV . 0 23 hm5C_associated_SNPs_69032 0 0 0 0 1 PRDM16 chr1:3103038 5'GT 3103038 Upstream 58bp
chr10 60145342 60145342 1 + G C rs1937 60145338 + 60145318 60145358 41 TCCGAAGCATGTGGGGCGTGCTGAGTGCCCTGGGAAGGTCT TCCGAAGCATGTGGGGCGTGCTGACTGCCCTGGGAAGGTCT < 41bp 0.740483663694863 0.45806295259984 0.70598096 0.67546237 prediction 0.480967327389725 Functional Loss - TFAM ENSG00000108064 CDS Human protein_coding chr10:60145338 chr10:60145342 nonsynonymous SNV 0.304 0 25 hm5C_associated_SNPs_69033 0 0 1 0 1 TFAM chr10:60145408 5'GT 60145408 Upstream 67bp
chr19 56925439 56925439 1 + A T LUSC 56925435 + 56925415 56925455 41 AAAGTGATGTTGGAGAACTACAGGAGCTTGGTATCATTGGG AAAGTGATGTTGGAGAACTACAGGTGCTTGGTATCATTGGG < 41bp 0.861054277499941 0.620571902877829 0.7537132 0.7141274 prediction 0.480964749244225 Functional Loss - ZNF583 ENSG00000198440 CDS Human protein_coding chr19:56925435 chr19:56925439 nonsynonymous SNV 0.012 1 25 hm5C_associated_SNPs_69034 0 0 1 0 1 ZNF583 chr19:56925454 5'GT 56925454 Upstream 16bp
chr11 44130799 44130799 1 + G T UCEC 44130796 + 44130776 44130816 41 ACATGTTGCCTGGAGGTCCCCCAGATTATAACACAGCCCTG ACATGTTGCCTGGAGGTCCCCCATATTATAACACAGCCCTG < 41bp 0.740471648616334 0.342721842441025 0.13598984 0.12804243 prediction 0.480943297232668 Functional Loss - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44130796 chr11:44130799 nonsynonymous SNV 0.869 5 24 hm5C_associated_SNPs_69036 0 0 1 0 2 EXT2 chr11:44130744 3'AG 44130744 Downstream 56bp
chr11 44130799 44130799 1 + G T UCEC 44130796 + 44130776 44130816 41 ACATGTTGCCTGGAGGTCCCCCAGATTATAACACAGCCCTG ACATGTTGCCTGGAGGTCCCCCATATTATAACACAGCCCTG < 41bp 0.740471648616334 0.342721842441025 0.13598984 0.12804243 prediction 0.480943297232668 Functional Loss - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44130796 chr11:44130799 nonsynonymous SNV 0.869 5 24 hm5C_associated_SNPs_69036 0 0 1 0 2 EXT2 chr11:44130833 5'GT 44130833 Upstream 35bp
chr1 29581918 29581918 1 + G T LUAD 29581915 + 29581895 29581935 41 GGGCACCTGCGGACCTGCCCCACGGTAAGTCTACTCTCCAT GGGCACCTGCGGACCTGCCCCACTGTAAGTCTACTCTCCAT < 41bp 0.740471216416001 0.348331192864926 0.24550438 0.20762849 prediction 0.480942432832002 Functional Loss - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29581915 chr1:29581918 nonsynonymous SNV 0.447 4 24 hm5C_associated_SNPs_69037 0 0 0 0 1 PTPRU chr1:29581918 5'GT 29581918 Upstream 1bp
chr12 6646823 6646823 1 + G T CESC 6646821 + 6646801 6646841 41 GGGAAACTGTGGCGTGATGGCCGCGGGGCTCTCCAGAACAT GGGAAACTGTGGCGTGATGGCCTCGGGGCTCTCCAGAACAT < 41bp 0.740465828341916 0.389624796932235 0.1521982 0.066204995 prediction 0.480931656683833 Functional Loss - GAPDH ENSG00000111640 CDS Human protein_coding chr12:6646821 chr12:6646823 nonsynonymous SNV 0.863 2 23 hm5C_associated_SNPs_69039 0 0 1 0 1 GAPDH chr12:6646750 3'AG 6646750 Downstream 74bp
chr4 100787761 100787761 1 + C T rs142005334 100787759 + 100787739 100787779 41 TGTCTGCTCTCTGTATATCTCCCGAGGAGAAGACTGAGTGA TGTCTGCTCTCTGTATATCTCCTGAGGAGAAGACTGAGTGA < 41bp 0.74657366763046 0.506113206766001 0.10086435 0.18662089 prediction 0.480920921728918 Functional Loss - DAPP1 ENSG00000070190 UTR3 Human protein_coding chr4:100787759 chr4:100787761 . . 0 23 hm5C_associated_SNPs_69041 0 0 0 1 2 DAPP1 chr4:100787714 3'AG 100787714 Downstream 48bp
chr4 100787761 100787761 1 + C T rs142005334 100787759 + 100787739 100787779 41 TGTCTGCTCTCTGTATATCTCCCGAGGAGAAGACTGAGTGA TGTCTGCTCTCTGTATATCTCCTGAGGAGAAGACTGAGTGA < 41bp 0.74657366763046 0.506113206766001 0.10086435 0.18662089 prediction 0.480920921728918 Functional Loss - DAPP1 ENSG00000070190 UTR3 Human protein_coding chr4:100787759 chr4:100787761 . . 0 23 hm5C_associated_SNPs_69041 0 0 0 1 2 DAPP1 chr4:100787775 5'GT 100787775 Upstream 15bp
chr7 2749363 2749363 1 + G A SKCM 2749360 + 2749340 2749380 41 CAGGGTGCGCTCAGCCTGGACGAGGCCCTGCGGCGGCCCCT CAGGGTGCGCTCAGCCTGGACGAAGCCCTGCGGCGGCCCCT < 41bp 0.781441933852486 0.540983523877101 0.66851175 0.37366134 prediction 0.480916819950771 Functional Loss - AMZ1 ENSG00000174945 CDS Human protein_coding chr7:2749360 chr7:2749363 nonsynonymous SNV 0.756 0 24 hm5C_associated_SNPs_69042 0 0 0 0 2 AMZ1 chr7:2749274 3'AG 2749274 Downstream 90bp
chr7 2749363 2749363 1 + G A SKCM 2749360 + 2749340 2749380 41 CAGGGTGCGCTCAGCCTGGACGAGGCCCTGCGGCGGCCCCT CAGGGTGCGCTCAGCCTGGACGAAGCCCTGCGGCGGCCCCT < 41bp 0.781441933852486 0.540983523877101 0.66851175 0.37366134 prediction 0.480916819950771 Functional Loss - AMZ1 ENSG00000174945 CDS Human protein_coding chr7:2749360 chr7:2749363 nonsynonymous SNV 0.756 0 24 hm5C_associated_SNPs_69042 0 0 0 0 2 AMZ1 chr7:2749450 5'GT 2749450 Upstream 88bp
chr4 25676167 25676167 1 + G A rs202236441 25676164 + 25676144 25676184 41 ATTGAGAGGGCTTATCCACTCACGCTGGGCTCCAACATCGG ATTGAGAGGGCTTATCCACTCACACTGGGCTCCAACATCGG < 41bp 0.74045284592483 0.492248374173088 0.025486648 0.010391861 prediction 0.48090569184966 Functional Loss - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25676164 chr4:25676167 synonymous SNV . 0 24 hm5C_associated_SNPs_69044 0 0 0 0 2 SLC34A2 chr4:25676127 3'AG 25676127 Downstream 41bp
chr4 25676167 25676167 1 + G A rs202236441 25676164 + 25676144 25676184 41 ATTGAGAGGGCTTATCCACTCACGCTGGGCTCCAACATCGG ATTGAGAGGGCTTATCCACTCACACTGGGCTCCAACATCGG < 41bp 0.74045284592483 0.492248374173088 0.025486648 0.010391861 prediction 0.48090569184966 Functional Loss - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25676164 chr4:25676167 synonymous SNV . 0 24 hm5C_associated_SNPs_69044 0 0 0 0 2 SLC34A2 chr4:25676251 5'GT 25676251 Upstream 85bp
chr1 151372652 151372652 1 + C T rs11557389 151372650 + 151372630 151372670 41 TCCAGTATTTGAAGCAAGTTCTCGGCCAGATGGTGTAAGTC TCCAGTATTTGAAGCAAGTTCTTGGCCAGATGGTGTAAGTC < 41bp 0.811790552464395 0.571342867838879 0.28046417 0.1503742 prediction 0.480895369251031 Functional Loss - PSMB4 ENSG00000159377 CDS Human protein_coding chr1:151372650 chr1:151372652 synonymous SNV . 0 23 hm5C_associated_SNPs_69047 0 0 1 0 1 PSMB4 chr1:151372663 5'GT 151372663 Upstream 12bp
chr19 49517793 49517793 1 + G A COAD 49517790 + 49517770 49517810 41 ACGGCATCCCCATAGACCTGCTGGACCGGCTGCTTATCGTC ACGGCATCCCCATAGACCTGCTGAACCGGCTGCTTATCGTC < 41bp 0.741861320028122 0.501417318246654 0.074180365 0.0327003 prediction 0.480888003562937 Functional Loss - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49517790 chr19:49517793 nonsynonymous SNV 0.991 3 24 hm5C_associated_SNPs_69048 0 0 1 2 2 RUVBL2 chr19:49517741 3'AG 49517741 Downstream 53bp
chr19 49517793 49517793 1 + G A COAD 49517790 + 49517770 49517810 41 ACGGCATCCCCATAGACCTGCTGGACCGGCTGCTTATCGTC ACGGCATCCCCATAGACCTGCTGAACCGGCTGCTTATCGTC < 41bp 0.741861320028122 0.501417318246654 0.074180365 0.0327003 prediction 0.480888003562937 Functional Loss - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49517790 chr19:49517793 nonsynonymous SNV 0.991 3 24 hm5C_associated_SNPs_69048 0 0 1 2 2 RUVBL2 chr19:49517860 5'GT 49517860 Upstream 68bp
chr9 5231623 5231623 1 + C T COAD 5231621 + 5231601 5231641 41 AGAGCTGAGGGGATGTGGTCCCCGATTTGGAAAACACTTGC AGAGCTGAGGGGATGTGGTCCCTGATTTGGAAAACACTTGC < 41bp 0.758164629773695 0.517723298237289 0.027891994 0.0381819 prediction 0.480882663072812 Functional Loss - INSL4 ENSG00000120211 CDS Human protein_coding chr9:5231621 chr9:5231623 stopgain 0.000 0 23 hm5C_associated_SNPs_69050 0 0 0 0 1 INSL4 chr9:5231719 5'GT 5231719 Upstream 97bp
chr7 102939145 102939145 1 + C T BLCA 102939143 + 102939123 102939163 41 GCTTCGGAAGACTCTGGGCTCTCAACATGCACAGTAAGTGA GCTTCGGAAGACTCTGGGCTCTTAACATGCACAGTAAGTGA < 41bp 0.740434201375199 0.460314285505867 0.08289209 0.06590903 prediction 0.480868402750398 Functional Loss - PMPCB ENSG00000105819 CDS Human protein_coding chr7:102939143 chr7:102939145 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_69053 0 0 1 0 1 PMPCB chr7:102939155 5'GT 102939155 Upstream 11bp
chr7 127229646 127229646 1 + C T LUSC 127229644 + 127229624 127229664 41 GCGGCACTACTTCCAGAACACTCAGGTGGAGTGTTGGGAGG GCGGCACTACTTCCAGAACACTTAGGTGGAGTGTTGGGAGG < 41bp 0.817159499447906 0.576728035231059 0.4246249 0.46085778 prediction 0.480862928433694 Functional Loss - ARF5 ENSG00000004059 CDS Human protein_coding chr7:127229644 chr7:127229646 stopgain 0.999 1 23 hm5C_associated_SNPs_69054 0 0 1 0 1 ARF5 chr7:127229648 5'GT 127229648 Upstream 3bp
chr16 81944273 81944273 1 + G C COAD 81944272 + 81944252 81944292 41 CACCTGCGCTGCGCCGAGTTCGAGCTGCGGCTCACGGACCC CACCTGCGCTGCGCCGAGTTCCAGCTGCGGCTCACGGACCC < 41bp 0.74043015530751 0.410245621314021 0.9149649 0.8201479 prediction 0.480860310615019 Functional Loss - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81944272 chr16:81944273 nonsynonymous SNV 0.991 2 22 hm5C_associated_SNPs_69055 0 0 0 0 1 PLCG2 chr16:81944325 5'GT 81944325 Upstream 53bp
chr19 15655021 15655021 1 + A C UCEC 15655017 + 15654997 15655037 41 TGTTCAATTTGGCAAAGTATCCGGAATACCAGGAGAAATGC TGTTCAATTTGGCAAAGTATCCGGCATACCAGGAGAAATGC < 41bp 0.74042852347729 0.339351200929596 0.9113647 0.90933716 prediction 0.48085704695458 Functional Loss - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15655017 chr19:15655021 nonsynonymous SNV 0.818 4 25 hm5C_associated_SNPs_69056 0 0 0 0 2 CYP4F22 chr19:15654961 3'AG 15654961 Downstream 61bp
chr19 15655021 15655021 1 + A C UCEC 15655017 + 15654997 15655037 41 TGTTCAATTTGGCAAAGTATCCGGAATACCAGGAGAAATGC TGTTCAATTTGGCAAAGTATCCGGCATACCAGGAGAAATGC < 41bp 0.74042852347729 0.339351200929596 0.9113647 0.90933716 prediction 0.48085704695458 Functional Loss - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15655017 chr19:15655021 nonsynonymous SNV 0.818 4 25 hm5C_associated_SNPs_69056 0 0 0 0 2 CYP4F22 chr19:15655090 5'GT 15655090 Upstream 70bp
chr1 55152077 55152077 1 + G A UCEC 55152074 + 55152054 55152094 41 CCTGGCTGCGTGGCTCCTCCCAAGGACACCAAGAAGGGTGC CCTGGCTGCGTGGCTCCTCCCAAAGACACCAAGAAGGGTGC < 41bp 0.75937943013716 0.518958758935264 0.4437557 0.20499599 prediction 0.480841342403793 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55152074 chr1:55152077 synonymous SNV . 0 24 hm5C_associated_SNPs_69060 0 0 0 0 1 MROH7 chr1:55152121 5'GT 55152121 Upstream 45bp
chr1 118495266 118495266 1 + T C UCEC 118495265 + 118495245 118495285 41 GAACAAGGGAGCCTCTTATTCTTGAGGAAGAAAGGGAGATG GAACAAGGGAGCCTCTTATTCCTGAGGAAGAAAGGGAGATG < 41bp 0.754309895110448 0.513890362434939 0.33613676 0.43305093 prediction 0.48083906535102 Functional Loss - WDR3 ENSG00000065183 CDS Human protein_coding chr1:118495265 chr1:118495266 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_69061 0 0 1 0 1 WDR3 chr1:118495285 5'GT 118495285 Upstream 20bp
chr16 2256181 2256181 1 + G T SARC 2256179 + 2256159 2256199 41 CGCTTCTGGCAGGCCCACAGCGGCATCTGCACCCGGACGGT CGCTTCTGGCAGGCCCACAGCGTCATCTGCACCCGGACGGT < 41bp 0.877179758020058 0.636764979005008 0.70169044 0.059085578 prediction 0.480829558030101 Functional Loss - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2256179 chr16:2256181 nonsynonymous SNV 0.923 4 23 hm5C_associated_SNPs_69063 0 0 1 0 1 MLST8 chr16:2256215 5'GT 2256215 Upstream 35bp
chr1 47614337 47614337 1 + C T GBM 47614335 + 47614315 47614355 41 TGGCCAGGGCCCTGACCCTGCTCCGCTTTGAGCTGCTGCCT TGGCCAGGGCCCTGACCCTGCTTCGCTTTGAGCTGCTGCCT < 41bp 0.740412505572934 0.483331233993061 0.0840081 0.07702699 prediction 0.480825011145867 Functional Loss - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47614335 chr1:47614337 synonymous SNV . 0 23 hm5C_associated_SNPs_69064 0 0 0 0 1 CYP4A22 chr1:47614274 3'AG 47614274 Downstream 64bp
chr2 241537444 241537444 1 + C T UCEC 241537442 + 241537422 241537462 41 GGCACCTACAAGGTTGTGCCCTCCACCTACCTGCCGGACAC GGCACCTACAAGGTTGTGCCCTTCACCTACCTGCCGGACAC < 41bp 0.815198962293311 0.574797283649396 0.9050841 0.3250513 prediction 0.48080335728783 Functional Loss - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241537442 chr2:241537444 nonsynonymous SNV 0.930 5 23 hm5C_associated_SNPs_69066 0 0 1 0 1 CAPN10 chr2:241537504 5'GT 241537504 Upstream 61bp
chr11 74907651 74907651 1 + G A UCEC 74907648 + 74907628 74907668 41 CCCTGTCTGCGACCCCAGCACTCGTGTGGAATACATCACAC CCCTGTCTGCGACCCCAGCACTCATGTGGAATACATCACAC < 41bp 0.764875048316099 0.524483488547408 0.15113205 0.07811937 prediction 0.480783119537383 Functional Loss - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74907648 chr11:74907651 nonsynonymous SNV 0.137 0 24 hm5C_associated_SNPs_69069 0 0 1 0 2 SLCO2B1 chr11:74907559 3'AG 74907559 Downstream 93bp
chr11 74907651 74907651 1 + G A UCEC 74907648 + 74907628 74907668 41 CCCTGTCTGCGACCCCAGCACTCGTGTGGAATACATCACAC CCCTGTCTGCGACCCCAGCACTCATGTGGAATACATCACAC < 41bp 0.764875048316099 0.524483488547408 0.15113205 0.07811937 prediction 0.480783119537383 Functional Loss - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74907648 chr11:74907651 nonsynonymous SNV 0.137 0 24 hm5C_associated_SNPs_69069 0 0 1 0 2 SLCO2B1 chr11:74907724 5'GT 74907724 Upstream 74bp
chr20 55206340 55206340 1 + C T BLCA 55206338 + 55206318 55206358 41 GGGCAGCACCTCTACAGCCCCGCGCCACCCCTCTCCCACAC GGGCAGCACCTCTACAGCCCCGTGCCACCCCTCTCCCACAC < 41bp 0.782616621359972 0.542227376910411 0.03959599 0.061828464 prediction 0.480778488899122 Functional Loss - TFAP2C ENSG00000087510 CDS Human protein_coding chr20:55206338 chr20:55206340 nonsynonymous SNV 0.991 1 23 hm5C_associated_SNPs_69071 0 0 0 0 1 TFAP2C chr20:55206261 3'AG 55206261 Downstream 80bp
chr7 106513286 106513286 1 + C T GBM 106513284 + 106513264 106513304 41 GCTGTGGCACAGCCATGCTGCACGACTTTACCCAACAAGTC GCTGTGGCACAGCCATGCTGCATGACTTTACCCAACAAGTC < 41bp 0.740388844151449 0.462034381073333 0.042006552 0.04967913 prediction 0.480777688302899 Functional Loss - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106513284 chr7:106513286 synonymous SNV . 0 23 hm5C_associated_SNPs_69072 0 0 0 0 1 PIK3CG chr7:106513383 5'GT 106513383 Upstream 98bp
chr12 3649871 3649871 1 + G A BLCA 3649868 + 3649848 3649888 41 CTCAACCCAGCTGCCCAGGACGGGGCAAGATGTCCAAGCTG CTCAACCCAGCTGCCCAGGACGGAGCAAGATGTCCAAGCTG < 41bp 0.776860229577334 0.536473610494552 0.87453973 0.42305267 prediction 0.480773238165564 Functional Loss - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3649868 chr12:3649871 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_69075 0 0 0 0 2 PRMT8 chr12:3649772 3'AG 3649772 Downstream 100bp
chr12 3649871 3649871 1 + G A BLCA 3649868 + 3649848 3649888 41 CTCAACCCAGCTGCCCAGGACGGGGCAAGATGTCCAAGCTG CTCAACCCAGCTGCCCAGGACGGAGCAAGATGTCCAAGCTG < 41bp 0.776860229577334 0.536473610494552 0.87453973 0.42305267 prediction 0.480773238165564 Functional Loss - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3649868 chr12:3649871 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_69075 0 0 0 0 2 PRMT8 chr12:3649957 5'GT 3649957 Upstream 87bp
chr9 129455844 129455844 1 + C T STAD 129455842 + 129455822 129455862 41 CTGAGACGGGCCTCAGTGTGCGCGTGGTCCAGGTCTGGTTT CTGAGACGGGCCTCAGTGTGCGTGTGGTCCAGGTCTGGTTT < 41bp 0.740376967785263 0.467415831433691 0.1674526 0.07493064 prediction 0.480753935570527 Functional Loss - LMX1B ENSG00000136944 CDS Human protein_coding chr9:129455842 chr9:129455844 synonymous SNV . 0 23 hm5C_associated_SNPs_69081 0 0 1 0 2 LMX1B chr9:129455803 3'AG 129455803 Downstream 42bp
chr9 129455844 129455844 1 + C T STAD 129455842 + 129455822 129455862 41 CTGAGACGGGCCTCAGTGTGCGCGTGGTCCAGGTCTGGTTT CTGAGACGGGCCTCAGTGTGCGTGTGGTCCAGGTCTGGTTT < 41bp 0.740376967785263 0.467415831433691 0.1674526 0.07493064 prediction 0.480753935570527 Functional Loss - LMX1B ENSG00000136944 CDS Human protein_coding chr9:129455842 chr9:129455844 synonymous SNV . 0 23 hm5C_associated_SNPs_69081 0 0 1 0 2 LMX1B chr9:129455880 5'GT 129455880 Upstream 37bp
chr9 138557187 138557187 1 + C T ESCA 138557185 + 138557165 138557205 41 AGGAACGGGACCGAGACCCACACGCTGGCGCTCTATGGTAC AGGAACGGGACCGAGACCCACATGCTGGCGCTCTATGGTAC < 41bp 0.782733679369118 0.542360686065204 0.06291488 0.28146306 prediction 0.480745986607828 Functional Loss - LCN9 ENSG00000148386 CDS Human protein_coding chr9:138557185 chr9:138557187 nonsynonymous SNV 0.099 1 23 hm5C_associated_SNPs_69083 0 0 0 0 2 LCN9 chr9:138557091 3'AG 138557091 Downstream 97bp
chr9 138557187 138557187 1 + C T ESCA 138557185 + 138557165 138557205 41 AGGAACGGGACCGAGACCCACACGCTGGCGCTCTATGGTAC AGGAACGGGACCGAGACCCACATGCTGGCGCTCTATGGTAC < 41bp 0.782733679369118 0.542360686065204 0.06291488 0.28146306 prediction 0.480745986607828 Functional Loss - LCN9 ENSG00000148386 CDS Human protein_coding chr9:138557185 chr9:138557187 nonsynonymous SNV 0.099 1 23 hm5C_associated_SNPs_69083 0 0 0 0 2 LCN9 chr9:138557201 5'GT 138557201 Upstream 15bp
chr16 21172531 21172531 1 + T C UCEC 21172530 + 21172510 21172550 41 AAAGAGGAGCCCCAGAGTATCTCAAGGGACTTGCAGGAACT AAAGAGGAGCCCCAGAGTATCCCAAGGGACTTGCAGGAACT < 41bp 0.791730406195284 0.551365794900549 0.7069814 0.2674355 prediction 0.480729222589469 Functional Loss - TMEM159 ENSG00000011638 CDS Human protein_coding chr16:21172530 chr16:21172531 nonsynonymous SNV 0.368 1 22 hm5C_associated_SNPs_69085 0 0 1 0 1 TMEM159 chr16:21172599 5'GT 21172599 Upstream 69bp
chr21 45709622 45709622 1 + G A SKCM 45709619 + 45709599 45709639 41 GACTCCGGCAGTGGGAAGAACAAGGCCCGCAGCAGCAGTGG GACTCCGGCAGTGGGAAGAACAAAGCCCGCAGCAGCAGTGG < 41bp 0.776271651062092 0.535908217275098 0.82751966 0.3059768 prediction 0.480726867573988 Functional Loss - AIRE ENSG00000160224 CDS Human protein_coding chr21:45709619 chr21:45709622 synonymous SNV . 0 24 hm5C_associated_SNPs_69087 0 0 0 0 2 AIRE chr21:45709540 3'AG 45709540 Downstream 83bp
chr21 45709622 45709622 1 + G A SKCM 45709619 + 45709599 45709639 41 GACTCCGGCAGTGGGAAGAACAAGGCCCGCAGCAGCAGTGG GACTCCGGCAGTGGGAAGAACAAAGCCCGCAGCAGCAGTGG < 41bp 0.776271651062092 0.535908217275098 0.82751966 0.3059768 prediction 0.480726867573988 Functional Loss - AIRE ENSG00000160224 CDS Human protein_coding chr21:45709619 chr21:45709622 synonymous SNV . 0 24 hm5C_associated_SNPs_69087 0 0 0 0 2 AIRE chr21:45709685 5'GT 45709685 Upstream 64bp
chr11 124742335 124742335 1 + G T LUAD 124742332 + 124742312 124742352 41 GGGGCGCTTCTCAGTGTCTCCAAGAGGCCAACTTAACATCA GGGGCGCTTCTCAGTGTCTCCAATAGGCCAACTTAACATCA < 41bp 0.740352814280865 0.349383080934638 0.7119372 0.05359012 prediction 0.480705628561731 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124742332 chr11:124742335 nonsynonymous SNV 0.974 0 24 hm5C_associated_SNPs_69088 0 0 0 0 1 ROBO3 chr11:124742277 3'AG 124742277 Downstream 59bp
chr19 4950725 4950725 1 + G T LUSC 4950722 + 4950702 4950742 41 GTCAGGGTGGTGCGCAATGTCAAGGGTGGCAAGAATAGCAA GTCAGGGTGGTGCGCAATGTCAATGGTGGCAAGAATAGCAA < 41bp 0.920827049096721 0.680478896777489 0.888119 0.3233526 prediction 0.480696304638465 Functional Loss - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4950722 chr19:4950725 . 0.007 3 24 hm5C_associated_SNPs_69089 0 0 0 0 1 UHRF1 chr19:4950785 5'GT 4950785 Upstream 61bp
chr2 234851292 234851292 1 + C T SKCM 234851290 + 234851270 234851310 41 GGGGAGGTGGTGAGAGATAACACCATCAGCAGGAGTTCAGA GGGGAGGTGGTGAGAGATAACATCATCAGCAGGAGTTCAGA < 41bp 0.845420235688381 0.605075784892761 0.064335674 0.039458662 prediction 0.480688901591239 Functional Loss - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234851290 chr2:234851292 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_69090 0 0 0 0 1 TRPM8 chr2:234851220 3'AG 234851220 Downstream 73bp
chr17 42226342 42226342 1 + A C HNSC 42226338 + 42226318 42226358 41 CCCCAGCAGCCCACCCATCCCTCCACCCGAGCCAAAACTCG CCCCAGCAGCCCACCCATCCCTCCCCCCGAGCCAAAACTCG < 41bp 0.740340485882479 0.297743216900428 0.93417764 0.43700618 prediction 0.480680971764958 Functional Loss - C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42226338 chr17:42226342 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_69093 0 0 0 0 1 C17orf53 chr17:42226395 5'GT 42226395 Upstream 54bp
chr3 50211375 50211375 1 + G A SKCM 50211372 + 50211352 50211392 41 TGGACCTGCACGACATCAACCGCGAGCCCCTCATTGTAAGG TGGACCTGCACGACATCAACCGCAAGCCCCTCATTGTAAGG < 41bp 0.750976230764632 0.510635851669043 0.20192477 0.068893045 prediction 0.480680758191178 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50211372 chr3:50211375 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_69094 0 0 1 0 1 SEMA3F chr3:50211386 5'GT 50211386 Upstream 12bp
chr8 67012243 67012243 1 + C T SKCM 67012241 + 67012221 67012261 41 ACAGCTAATCAAAGAAGGATCTCGAAGTTATTGCACAGACT ACAGCTAATCAAAGAAGGATCTTGAAGTTATTGCACAGACT < 41bp 0.740340372097865 0.47184333239713 0.47676262 0.15593079 prediction 0.48068074419573 Functional Loss - DNAJC5B ENSG00000147570 CDS Human protein_coding chr8:67012241 chr8:67012243 stopgain 0.957 1 23 hm5C_associated_SNPs_69095 0 0 0 0 1 DNAJC5B chr8:67012172 3'AG 67012172 Downstream 72bp
chr16 85105471 85105471 1 + C T SKCM 85105469 + 85105449 85105489 41 AAAAGGCCGGGAGTGGTTTGCTCGATACGTGAGTGCCCAGG AAAAGGCCGGGAGTGGTTTGCTTGATACGTGAGTGCCCAGG < 41bp 0.83785262263499 0.597513641062068 0.3877809 0.23360327 prediction 0.480677963145844 Functional Loss - KIAA0513 ENSG00000135709 CDS Human protein_coding chr16:85105469 chr16:85105471 stopgain 0.958 1 23 hm5C_associated_SNPs_69099 0 0 1 0 2 KIAA0513 chr16:85105389 3'AG 85105389 Downstream 83bp
chr16 85105471 85105471 1 + C T SKCM 85105469 + 85105449 85105489 41 AAAAGGCCGGGAGTGGTTTGCTCGATACGTGAGTGCCCAGG AAAAGGCCGGGAGTGGTTTGCTTGATACGTGAGTGCCCAGG < 41bp 0.83785262263499 0.597513641062068 0.3877809 0.23360327 prediction 0.480677963145844 Functional Loss - KIAA0513 ENSG00000135709 CDS Human protein_coding chr16:85105469 chr16:85105471 stopgain 0.958 1 23 hm5C_associated_SNPs_69099 0 0 1 0 2 KIAA0513 chr16:85105488 5'GT 85105488 Upstream 18bp
chr1 170965747 170965747 1 + A C STAD 170965743 + 170965723 170965763 41 GAATTTCTGGGACCAGTTATCTGAAGATCTGTGTTACTATC GAATTTCTGGGACCAGTTATCTGACGATCTGTGTTACTATC < 41bp 0.740334960419573 0.334091099145896 0.6991081 0.61365134 prediction 0.480669920839147 Functional Loss - MROH9 ENSG00000117501 CDS Human protein_coding chr1:170965743 chr1:170965747 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_69100 0 0 0 0 2 MROH9 chr1:170965648 3'AG 170965648 Downstream 100bp
chr1 170965747 170965747 1 + A C STAD 170965743 + 170965723 170965763 41 GAATTTCTGGGACCAGTTATCTGAAGATCTGTGTTACTATC GAATTTCTGGGACCAGTTATCTGACGATCTGTGTTACTATC < 41bp 0.740334960419573 0.334091099145896 0.6991081 0.61365134 prediction 0.480669920839147 Functional Loss - MROH9 ENSG00000117501 CDS Human protein_coding chr1:170965743 chr1:170965747 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_69100 0 0 0 0 2 MROH9 chr1:170965785 5'GT 170965785 Upstream 39bp
chr3 42730464 42730464 1 + G A BLCA 42730461 + 42730441 42730481 41 CACTCTTTGGGGCCACTGTCCATGATGGCCGCATTATCGTG CACTCTTTGGGGCCACTGTCCATAATGGCCGCATTATCGTG < 41bp 0.748793432833763 0.508463581138741 0.24089807 0.11378837 prediction 0.480659703390043 Functional Loss - KLHL40 ENSG00000157119 CDS Human protein_coding chr3:42730461 chr3:42730464 nonsynonymous SNV 0.765 0 24 hm5C_associated_SNPs_69101 0 0 0 0 1 KLHL40 chr3:42730546 5'GT 42730546 Upstream 83bp
chr11 92703026 92703026 1 + G C LUAD 92703022 + 92703002 92703042 41 CTGGGTGGCTCCAGCGCTGTCCGCGGTGCTCATCGTCACCA CTGGGTGGCTCCAGCGCTGTCCGCCGTGCTCATCGTCACCA < 41bp 0.843194901986571 0.602865626685257 0.33803457 0.06237936 prediction 0.480658550602628 Functional Loss - MTNR1B ENSG00000134640 CDS Human protein_coding chr11:92703022 chr11:92703026 synonymous SNV . 0 25 hm5C_associated_SNPs_69102 0 0 0 0 1 MTNR1B chr11:92703114 5'GT 92703114 Upstream 89bp
chr20 32194794 32194794 1 + G T UCEC 32194792 + 32194772 32194812 41 GAAAAGGGTGCCAGCGATGCCTGGATCGCCTGTGGAAGTGA GAAAAGGGTGCCAGCGATGCCTTGATCGCCTGTGGAAGTGA < 41bp 0.740323858299941 0.416018765115204 0.15751597 0.03634721 prediction 0.480647716599882 Functional Loss - CBFA2T2 ENSG00000078699 CDS Human protein_coding chr20:32194792 chr20:32194794 stopgain 0.998 1 23 hm5C_associated_SNPs_69103 0 0 1 0 1 CBFA2T2 chr20:32194762 3'AG 32194762 Downstream 33bp
chr22 45689134 45689134 1 + T C UCEC 45689133 + 45689113 45689153 41 TGATCGTCATCACTTCCATCCTGGGCTCCCTGCCCTTCTTT TGATCGTCATCACTTCCATCCCGGGCTCCCTGCCCTTCTTT < 41bp 0.740322451352925 0.496076011834235 0.83135825 0.91237366 prediction 0.48064490270585 Functional Loss - UPK3A ENSG00000100373 CDS Human protein_coding chr22:45689133 chr22:45689134 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_69105 0 0 0 0 2 UPK3A chr22:45689062 3'AG 45689062 Downstream 73bp
chr22 45689134 45689134 1 + T C UCEC 45689133 + 45689113 45689153 41 TGATCGTCATCACTTCCATCCTGGGCTCCCTGCCCTTCTTT TGATCGTCATCACTTCCATCCCGGGCTCCCTGCCCTTCTTT < 41bp 0.740322451352925 0.496076011834235 0.83135825 0.91237366 prediction 0.48064490270585 Functional Loss - UPK3A ENSG00000100373 CDS Human protein_coding chr22:45689133 chr22:45689134 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_69105 0 0 0 0 2 UPK3A chr22:45689194 5'GT 45689194 Upstream 61bp
chr6 138202199 138202199 1 + C T SKCM 138202197 + 138202177 138202217 41 GAGCCAGCGCAGAGATGTGCCTCGAACCACACAAAGCACCT GAGCCAGCGCAGAGATGTGCCTTGAACCACACAAAGCACCT < 41bp 0.740320405683309 0.460338895591063 0.9081848 0.23049706 prediction 0.480640811366618 Functional Loss - TNFAIP3 ENSG00000118503 CDS Human protein_coding chr6:138202197 chr6:138202199 stopgain 0.756 0 23 hm5C_associated_SNPs_69106 0 0 1 0 1 TNFAIP3 chr6:138202172 3'AG 138202172 Downstream 28bp
chr20 61870735 61870735 1 + G T LUAD 61870733 + 61870713 61870753 41 GGGTCAGTCCAGCCGAGGCCCAGAGGGCGTGGTGGGTTCTT GGGTCAGTCCAGCCGAGGCCCATAGGGCGTGGTGGGTTCTT < 41bp 0.740311717176141 0.385882602363428 0.48070908 0.09072879 prediction 0.480623434352282 Functional Loss - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61870733 chr20:61870735 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_69108 0 0 1 0 1 BIRC7 chr20:61870710 3'AG 61870710 Downstream 26bp
chr1 175049336 175049336 1 + G A STAD 175049333 + 175049313 175049353 41 GGCCTGCAGCTGCTCAAGAACACGGAGGATTCTCTGCTGGT GGCCTGCAGCTGCTCAAGAACACAGAGGATTCTCTGCTGGT < 41bp 0.765282272701029 0.524970677206406 0.8476908 0.49247906 prediction 0.480623190989246 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175049333 chr1:175049336 synonymous SNV . 0 24 hm5C_associated_SNPs_69109 0 0 0 0 1 TNN chr1:175049299 3'AG 175049299 Downstream 38bp
chr1 110255769 110255769 1 + G T LUSC 110255767 + 110255747 110255787 41 ACTATGACAGAAGCCAGTGGCTGAATGAAAAATTCAAGCTG ACTATGACAGAAGCCAGTGGCTTAATGAAAAATTCAAGCTG < 41bp 0.740307531965723 0.444981410192642 0.22766426 0.14438108 prediction 0.480615063931447 Functional Loss - GSTM5 ENSG00000134201 CDS Human protein_coding chr1:110255767 chr1:110255769 synonymous SNV . 0 23 hm5C_associated_SNPs_69110 0 0 0 0 2 GSTM5 chr1:110255741 3'AG 110255741 Downstream 29bp
chr1 110255769 110255769 1 + G T LUSC 110255767 + 110255747 110255787 41 ACTATGACAGAAGCCAGTGGCTGAATGAAAAATTCAAGCTG ACTATGACAGAAGCCAGTGGCTTAATGAAAAATTCAAGCTG < 41bp 0.740307531965723 0.444981410192642 0.22766426 0.14438108 prediction 0.480615063931447 Functional Loss - GSTM5 ENSG00000134201 CDS Human protein_coding chr1:110255767 chr1:110255769 synonymous SNV . 0 23 hm5C_associated_SNPs_69110 0 0 0 0 2 GSTM5 chr1:110255805 5'GT 110255805 Upstream 37bp
chr7 49951654 49951654 1 + C T LIHC 49951652 + 49951632 49951672 41 CCAAACTGCTTTGCAGAAACCGCGGTGATCCCTGCTGGCAG CCAAACTGCTTTGCAGAAACCGTGGTGATCCCTGCTGGCAG < 41bp 0.777300128585799 0.536998718610337 0.8210194 0.5884244 prediction 0.480602819950923 Functional Loss - VWC2 ENSG00000188730 CDS Human protein_coding chr7:49951652 chr7:49951654 nonsynonymous SNV 0.662 0 23 hm5C_associated_SNPs_69111 0 0 0 0 1 VWC2 chr7:49951630 3'AG 49951630 Downstream 25bp
chr12 104476528 104476528 1 + G T UCEC 104476526 + 104476506 104476546 41 CCACCCTAGTATCAGATTCTCAGGAAGATAAAAAAAATTCA CCACCCTAGTATCAGATTCTCATGAAGATAAAAAAAATTCA < 41bp 0.740299541296521 0.399052248632132 0.88938016 0.10661602 prediction 0.480599082593042 Functional Loss - HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104476526 chr12:104476528 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_69113 0 0 1 1 1 HCFC2 chr12:104476491 3'AG 104476491 Downstream 38bp
chr16 1584527 1584527 1 + G T UCEC 1584525 + 1584505 1584545 41 GGCTGGGGCTCCGAGGCAGCCGGCTTCCAGGAGTCCCGAGG GGCTGGGGCTCCGAGGCAGCCGTCTTCCAGGAGTCCCGAGG < 41bp 0.74029640001517 0.38563615535226 0.855623 0.376167 prediction 0.480592800030341 Functional Loss - TMEM204 ENSG00000131634 CDS Human protein_coding chr16:1584525 chr16:1584527 nonsynonymous SNV 0.773 4 23 hm5C_associated_SNPs_69115 0 0 0 0 1 TMEM204 chr16:1584556 5'GT 1584556 Upstream 30bp
chr11 73105540 73105540 1 + G A COAD 73105537 + 73105517 73105557 41 TGCAGGCTGCCGCCAGCGCCCCCGAACGTGCCACACATCTG TGCAGGCTGCCGCCAGCGCCCCCAAACGTGCCACACATCTG < 41bp 0.740292204446804 0.497233671410932 0.07633528 0.22167566 prediction 0.480584408893608 Functional Loss - RELT ENSG00000054967 CDS Human protein_coding chr11:73105537 chr11:73105540 synonymous SNV . 0 24 hm5C_associated_SNPs_69118 0 0 1 0 1 RELT chr11:73105522 3'AG 73105522 Downstream 19bp
chr2 27151141 27151141 1 + G A SKCM 27151138 + 27151118 27151158 41 TCCAGGGTGCTAAGGAGGCACTGGATTTGGGGATCACAGGC TCCAGGGTGCTAAGGAGGCACTGAATTTGGGGATCACAGGC < 41bp 0.756323189775859 0.516032003805797 0.46581203 0.35646352 prediction 0.480582371940124 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27151138 chr2:27151141 nonsynonymous SNV 0.971 2 24 hm5C_associated_SNPs_69119 0 0 1 0 1 DPYSL5 chr2:27151191 5'GT 27151191 Upstream 51bp
chr10 75528883 75528883 1 + C T BRCA 75528881 + 75528861 75528901 41 AGTTCAAGCATGACGATCGGCTCAATGAAGAGAGCGGAGCT AGTTCAAGCATGACGATCGGCTTAATGAAGAGAGCGGAGCT < 41bp 0.740289121426349 0.445206937935168 0.11359531 0.16931617 prediction 0.480578242852698 Functional Loss - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75528881 chr10:75528883 synonymous SNV . 0 23 hm5C_associated_SNPs_69120 0 0 1 0 1 SEC24C chr10:75528910 5'GT 75528910 Upstream 28bp
chr9 90498935 90498935 1 + G T UCEC 90498933 + 90498913 90498953 41 AGGGAGAGAAGCGGGAGGTCCAGGAGCAGGAAGATCTCAGC AGGGAGAGAAGCGGGAGGTCCATGAGCAGGAAGATCTCAGC < 41bp 0.899662414034147 0.659376912334275 0.89333624 0.40668857 prediction 0.480571003399743 Functional Loss - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90498933 chr9:90498935 nonsynonymous SNV 0.000 3 23 hm5C_associated_SNPs_69121 0 0 0 0 2 SPATA31E1 chr9:90498907 3'AG 90498907 Downstream 29bp
chr9 90498935 90498935 1 + G T UCEC 90498933 + 90498913 90498953 41 AGGGAGAGAAGCGGGAGGTCCAGGAGCAGGAAGATCTCAGC AGGGAGAGAAGCGGGAGGTCCATGAGCAGGAAGATCTCAGC < 41bp 0.899662414034147 0.659376912334275 0.89333624 0.40668857 prediction 0.480571003399743 Functional Loss - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90498933 chr9:90498935 nonsynonymous SNV 0.000 3 23 hm5C_associated_SNPs_69121 0 0 0 0 2 SPATA31E1 chr9:90498961 5'GT 90498961 Upstream 27bp
chr19 4262063 4262063 1 + G A rs112738383 4262060 + 4262040 4262080 41 TCAGAGGATGAGGCTGCTCCCTCGCCCCTGCAGCCAGCCCT TCAGAGGATGAGGCTGCTCCCTCACCCCTGCAGCCAGCCCT < 41bp 0.740282692120849 0.492720333839262 0.17699292 0.13369781 prediction 0.480565384241697 Functional Loss - CCDC94 ENSG00000105248 CDS Human protein_coding chr19:4262060 chr19:4262063 synonymous SNV . 0 24 hm5C_associated_SNPs_69123 0 0 1 0 2 CCDC94 chr19:4261991 3'AG 4261991 Downstream 73bp
chr19 4262063 4262063 1 + G A rs112738383 4262060 + 4262040 4262080 41 TCAGAGGATGAGGCTGCTCCCTCGCCCCTGCAGCCAGCCCT TCAGAGGATGAGGCTGCTCCCTCACCCCTGCAGCCAGCCCT < 41bp 0.740282692120849 0.492720333839262 0.17699292 0.13369781 prediction 0.480565384241697 Functional Loss - CCDC94 ENSG00000105248 CDS Human protein_coding chr19:4262060 chr19:4262063 synonymous SNV . 0 24 hm5C_associated_SNPs_69123 0 0 1 0 2 CCDC94 chr19:4262111 5'GT 4262111 Upstream 49bp
chr14 24846079 24846079 1 + A C COAD 24846075 + 24846055 24846095 41 TCCCTATCCAGGGTATCACGCTGGAGGAAGGTGGGTGTGGG TCCCTATCCAGGGTATCACGCTGGCGGAAGGTGGGTGTGGG < 41bp 0.892682253396838 0.652417988373769 0.5550212 0.755404 prediction 0.480528530046138 Functional Loss - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24846075 chr14:24846079 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_69127 0 0 1 0 1 NFATC4 chr14:24846084 5'GT 24846084 Upstream 6bp
chr19 14038842 14038842 1 + C T rs138991278 14038840 + 14038820 14038860 41 CCTGTGCCGGCAGCTGTGCCCACAGTGAGACCCCCCACCCC CCTGTGCCGGCAGCTGTGCCCATAGTGAGACCCCCCACCCC < 41bp 0.755098235465312 0.514837603034553 0.31382608 0.3504022 prediction 0.480521264861518 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14038840 chr19:14038842 nonsynonymous SNV 0.778 0 23 hm5C_associated_SNPs_69129 0 0 1 0 1 CC2D1A chr19:14038843 5'GT 14038843 Upstream 2bp
chr1 197398707 197398707 1 + C T HNSC 197398705 + 197398685 197398725 41 GTGGATTCAGCCCGTGTCCTCACGGAGCCCAGTGCCAGCCG GTGGATTCAGCCCGTGTCCTCATGGAGCCCAGTGCCAGCCG < 41bp 0.772956314727688 0.532696734343512 0.74227756 0.491989 prediction 0.480519160768351 Functional Loss - CRB1 ENSG00000134376 CDS Human protein_coding chr1:197398705 chr1:197398707 synonymous SNV . 0 23 hm5C_associated_SNPs_69132 0 0 0 0 1 CRB1 chr1:197398744 5'GT 197398744 Upstream 38bp
chr17 80674766 80674766 1 + G T UCEC 80674763 + 80674743 80674783 41 GTGTTCGTGAAAGTGAACCCCAAGGCGGAGGTCAGGCAGCG GTGTTCGTGAAAGTGAACCCCAATGCGGAGGTCAGGCAGCG < 41bp 0.740251177127459 0.392090537097091 0.3737194 0.3208975 prediction 0.480502354254918 Functional Loss - FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80674763 chr17:80674766 nonsynonymous SNV 0.433 1 24 hm5C_associated_SNPs_69135 0 0 1 0 1 FN3KRP chr17:80674772 5'GT 80674772 Upstream 7bp
chr20 24524121 24524121 1 + G T SKCM 24524118 + 24524098 24524138 41 CCAAAGACAGCCTCGAGTACCCGGATGGGAAGTTCATTGAC CCAAAGACAGCCTCGAGTACCCGTATGGGAAGTTCATTGAC < 41bp 0.7402492772429 0.351110423565556 0.5738214 0.109791756 prediction 0.4804985544858 Functional Loss - SYNDIG1 ENSG00000101463 CDS Human protein_coding chr20:24524118 chr20:24524121 nonsynonymous SNV 0.878 3 24 hm5C_associated_SNPs_69136 0 0 0 0 1 SYNDIG1 chr20:24524213 5'GT 24524213 Upstream 93bp
chr6 35754821 35754821 1 + G T SARC 35754819 + 35754799 35754839 41 AACCAGGACTGCGAGACTGGCTGCTGCCAACGTGCTCCAGA AACCAGGACTGCGAGACTGGCTTCTGCCAACGTGCTCCAGA < 41bp 0.740239397742738 0.384082244372272 0.56849074 0.25203303 prediction 0.480478795485476 Functional Loss - CLPSL1 ENSG00000204140 CDS Human protein_coding chr6:35754819 chr6:35754821 nonsynonymous SNV 0.030 3 23 hm5C_associated_SNPs_69139 0 0 0 0 2 CLPSL1 chr6:35754775 3'AG 35754775 Downstream 47bp
chr6 35754821 35754821 1 + G T SARC 35754819 + 35754799 35754839 41 AACCAGGACTGCGAGACTGGCTGCTGCCAACGTGCTCCAGA AACCAGGACTGCGAGACTGGCTTCTGCCAACGTGCTCCAGA < 41bp 0.740239397742738 0.384082244372272 0.56849074 0.25203303 prediction 0.480478795485476 Functional Loss - CLPSL1 ENSG00000204140 CDS Human protein_coding chr6:35754819 chr6:35754821 nonsynonymous SNV 0.030 3 23 hm5C_associated_SNPs_69139 0 0 0 0 2 CLPSL1 chr6:35754897 5'GT 35754897 Upstream 77bp
chr7 107353041 107353041 1 + G T BLCA 107353039 + 107353019 107353059 41 ATTAATAGAAACAGAGCTGACGGAAGAAGAACTTGATGTCC ATTAATAGAAACAGAGCTGACGTAAGAAGAACTTGATGTCC < 41bp 0.740235108062609 0.412310254602129 0.5779757 0.18642586 prediction 0.480470216125217 Functional Loss - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107353039 chr7:107353041 stopgain 0.898 0 23 hm5C_associated_SNPs_69145 0 0 0 0 2 SLC26A4 chr7:107352984 3'AG 107352984 Downstream 58bp
chr7 107353041 107353041 1 + G T BLCA 107353039 + 107353019 107353059 41 ATTAATAGAAACAGAGCTGACGGAAGAAGAACTTGATGTCC ATTAATAGAAACAGAGCTGACGTAAGAAGAACTTGATGTCC < 41bp 0.740235108062609 0.412310254602129 0.5779757 0.18642586 prediction 0.480470216125217 Functional Loss - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107353039 chr7:107353041 stopgain 0.898 0 23 hm5C_associated_SNPs_69145 0 0 0 0 2 SLC26A4 chr7:107353067 5'GT 107353067 Upstream 27bp
chr6 42902285 42902285 1 + C T UCEC 42902283 + 42902263 42902303 41 AAGACCAAGGAGGTGATTGGCACGGGCTATGGCATCCTGGA AAGACCAAGGAGGTGATTGGCATGGGCTATGGCATCCTGGA < 41bp 0.806846869024923 0.566614123772941 0.9162682 0.89637065 prediction 0.480465490503963 Functional Loss - CNPY3 ENSG00000137161 CDS Human protein_coding chr6:42902283 chr6:42902285 nonsynonymous SNV 0.775 3 23 hm5C_associated_SNPs_69147 0 0 1 0 1 CNPY3 chr6:42902336 5'GT 42902336 Upstream 52bp
chr19 41928996 41928996 1 + G T SARC 41928994 + 41928974 41929014 41 AACAGGACCACCCCATCTCCCGGCTGCGGCACTATCTGCTG AACAGGACCACCCCATCTCCCGTCTGCGGCACTATCTGCTG < 41bp 0.740231431441336 0.386217554368845 0.7537118 0.1462203 prediction 0.480462862882673 Functional Loss - BCKDHA ENSG00000248098;ENSG00000255730 CDS Human other chr19:41928994 chr19:41928996 synonymous SNV . 0 23 hm5C_associated_SNPs_69148 0 0 1 0 2 BCKDHA chr19:41928903 3'AG 41928903 Downstream 94bp
chr19 41928996 41928996 1 + G T SARC 41928994 + 41928974 41929014 41 AACAGGACCACCCCATCTCCCGGCTGCGGCACTATCTGCTG AACAGGACCACCCCATCTCCCGTCTGCGGCACTATCTGCTG < 41bp 0.740231431441336 0.386217554368845 0.7537118 0.1462203 prediction 0.480462862882673 Functional Loss - BCKDHA ENSG00000248098;ENSG00000255730 CDS Human other chr19:41928994 chr19:41928996 synonymous SNV . 0 23 hm5C_associated_SNPs_69148 0 0 1 0 2 BCKDHA chr19:41929074 5'GT 41929074 Upstream 79bp
chr17 15644532 15644532 1 + G A LIHC 15644529 + 15644509 15644549 41 TCTGGGCGCTTACCCAGTTGCTCGCTGGTGAGAGGCACTCC TCTGGGCGCTTACCCAGTTGCTCACTGGTGAGAGGCACTCC < 41bp 0.741515402619897 0.501284359768686 0.07447684 0.09473482 prediction 0.48046208570242 Functional Loss - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15644529 chr17:15644532 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_69149 0 0 0 1 2 TBC1D26 chr17:15644436 3'AG 15644436 Downstream 97bp
chr17 15644532 15644532 1 + G A LIHC 15644529 + 15644509 15644549 41 TCTGGGCGCTTACCCAGTTGCTCGCTGGTGAGAGGCACTCC TCTGGGCGCTTACCCAGTTGCTCACTGGTGAGAGGCACTCC < 41bp 0.741515402619897 0.501284359768686 0.07447684 0.09473482 prediction 0.48046208570242 Functional Loss - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15644529 chr17:15644532 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_69149 0 0 0 1 2 TBC1D26 chr17:15644555 5'GT 15644555 Upstream 24bp
chr3 111795755 111795755 1 + T C STAD 111795754 + 111795734 111795774 41 CCACACCATGGACTGCACACCTCGGGATGTATGTTCAGGGG CCACACCATGGACTGCACACCCCGGGATGTATGTTCAGGGG < 41bp 0.783208561039653 0.542979879356804 0.18288472 0.24560282 prediction 0.480457363365697 Functional Loss - TMPRSS7 ENSG00000176040 CDS Human protein_coding chr3:111795754 chr3:111795755 nonsynonymous SNV 0.856 5 22 hm5C_associated_SNPs_69150 0 0 0 0 1 TMPRSS7 chr3:111795723 3'AG 111795723 Downstream 33bp
chr16 90001161 90001161 1 + G T COAD 90001159 + 90001139 90001179 41 CAGAGTGGGGCCGGCAACAACTGGGCCAAGGGTCACTACAC CAGAGTGGGGCCGGCAACAACTTGGCCAAGGGTCACTACAC < 41bp 0.89407702637145 0.653848690243483 0.89951503 0.20746848 prediction 0.480456672255934 Functional Loss - TUBB3 ENSG00000198211;ENSG00000258947 CDS Human other chr16:90001159 chr16:90001161 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_69151 0 0 1 0 1 TUBB3 chr16:90001137 3'AG 90001137 Downstream 25bp
chr20 45362433 45362433 1 + G T SARC 45362430 + 45362410 45362450 41 TGGCCACAGGCAGAACTCCACTGGCATCCCGTACAGCCGCA TGGCCACAGGCAGAACTCCACTGTCATCCCGTACAGCCGCA < 41bp 0.740224247456157 0.346085840465327 0.37337667 0.056012362 prediction 0.480448494912314 Functional Loss - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45362430 chr20:45362433 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_69153 0 0 1 0 1 SLC2A10 chr20:45362395 3'AG 45362395 Downstream 39bp
chr6 26463655 26463655 1 + C T STAD 26463653 + 26463633 26463673 41 GACGGCCTCTTCATGGTCACCACGGCTGTGATCATCAGAGA GACGGCCTCTTCATGGTCACCATGGCTGTGATCATCAGAGA < 41bp 0.80082617514456 0.560602530893531 0.10908651 0.14791915 prediction 0.480447288502057 Functional Loss - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26463653 chr6:26463655 nonsynonymous SNV 0.359 0 23 hm5C_associated_SNPs_69154 0 0 0 0 1 BTN2A1 chr6:26463753 5'GT 26463753 Upstream 99bp
chr6 44144384 44144384 1 + G A SKCM 44144381 + 44144361 44144401 41 CTGCTGCACAAGACGGAGGACGGGGAGTTCTGGTCAGTGTG CTGCTGCACAAGACGGAGGACGGAGAGTTCTGGTCAGTGTG < 41bp 0.769982369536994 0.529760063226449 0.8774575 0.6539049 prediction 0.480444612621091 Functional Loss - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44144381 chr6:44144384 synonymous SNV . 0 24 hm5C_associated_SNPs_69155 0 0 0 0 1 CAPN11 chr6:44144392 5'GT 44144392 Upstream 9bp
chr19 42573112 42573112 1 + G T SARC 42573110 + 42573090 42573130 41 GCACGGACATGCCAGGGGCCCGGGGTAAGTGAGAGCCCAAG GCACGGACATGCCAGGGGCCCGTGGTAAGTGAGAGCCCAAG < 41bp 0.896588562353287 0.656367337407693 0.9004256 0.50973135 prediction 0.480442449891189 Functional Loss - ZNF574 ENSG00000105732 CDS Human protein_coding chr19:42573110 chr19:42573112 synonymous SNV . 0 23 hm5C_associated_SNPs_69156 0 0 0 0 1 ZNF574 chr19:42573113 5'GT 42573113 Upstream 2bp
chr3 197746225 197746225 1 + A T HNSC 197746221 + 197746201 197746241 41 CAGTTGCCGTGTGTAATTTGCAGAAGTTCCCTAAGCCTTTA CAGTTGCCGTGTGTAATTTGCAGATGTTCCCTAAGCCTTTA < 41bp 0.740218120302047 0.424157004136853 0.59190285 0.57048887 prediction 0.480436240604094 Functional Loss - LMLN ENSG00000185621 CDS Human protein_coding chr3:197746221 chr3:197746225 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_69158 0 0 1 0 1 LMLN chr3:197746256 5'GT 197746256 Upstream 32bp
chrX 155234957 155234957 1 + G T TGCT 155234954 + 155234934 155234974 41 CCCCCACAGCAGGCCCAGCACAGGGATCACATTGTCGGGGT CCCCCACAGCAGGCCCAGCACAGTGATCACATTGTCGGGGT < 41bp 0.9283519480323 0.688134631753369 0.8855636 0.69055545 prediction 0.480434632557862 Functional Loss - IL9R ENSG00000124334 CDS Human protein_coding chrX:155234954 chrX:155234957 nonsynonymous SNV 0.016 0 24 hm5C_associated_SNPs_69159 0 0 0 0 1 IL9R chrX:155234943 3'AG 155234943 Downstream 15bp
chr7 34118721 34118721 1 + G A HNSC 34118718 + 34118698 34118738 41 CACCGTGCGCTGGAACGGCTCGCGCATCGCGCTCCCCTGCC CACCGTGCGCTGGAACGGCTCGCACATCGCGCTCCCCTGCC < 41bp 0.770810617954059 0.530593388480092 0.2991271 0.039078474 prediction 0.480434458947934 Functional Loss - BMPER ENSG00000164619 CDS Human protein_coding chr7:34118718 chr7:34118721 nonsynonymous SNV 0.857 4 24 hm5C_associated_SNPs_69160 0 0 0 0 1 BMPER chr7:34118798 5'GT 34118798 Upstream 78bp
chr9 108456972 108456972 1 + G A SARC 108456969 + 108456949 108456989 41 CTCCATGGGACGAGTTGGCTCTGGCCTTCTCCCGCACGTCC CTCCATGGGACGAGTTGGCTCTGACCTTCTCCCGCACGTCC < 41bp 0.758056683661494 0.517842031768338 0.32233566 0.07230964 prediction 0.480429303786311 Functional Loss - TMEM38B ENSG00000095209 CDS Human protein_coding chr9:108456969 chr9:108456972 nonsynonymous SNV 0.586 0 24 hm5C_associated_SNPs_69162 0 0 1 0 1 TMEM38B chr9:108457053 5'GT 108457053 Upstream 82bp
chr17 21215473 21215473 1 + G C HNSC 21215469 + 21215449 21215489 41 TGCAGATTGAGATGGCCATCCTGCGGTTCCCTTACGAGTCC TGCAGATTGAGATGGCCATCCTGCCGTTCCCTTACGAGTCC < 41bp 0.842373637740109 0.602162689878561 0.36669683 0.15584359 prediction 0.480421895723097 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21215469 chr17:21215473 nonsynonymous SNV 0.845 4 25 hm5C_associated_SNPs_69165 0 0 1 0 1 MAP2K3 chr17:21215454 3'AG 21215454 Downstream 20bp
chr12 47628862 47628862 1 + G A STAD 47628859 + 47628839 47628879 41 TGGGCGTCATGATCCTTCTGCGGGCCTCCGAAGTGCGGCAG TGGGCGTCATGATCCTTCTGCGGACCTCCGAAGTGCGGCAG < 41bp 0.740207261332176 0.483228078107974 0.88453376 0.44596368 prediction 0.480414522664353 Functional Loss - PCED1B ENSG00000179715 CDS Human protein_coding chr12:47628859 chr12:47628862 nonsynonymous SNV 0.253 0 24 hm5C_associated_SNPs_69168 0 0 0 0 1 PCED1B chr12:47628790 3'AG 47628790 Downstream 73bp
chr1 246730090 246730090 1 + G C rs3120714 246730089 + 246730069 246730109 41 GCCGCGCAGCCTCTGCCCTCCGGGTGAGGTGTAGCCCGGTC GCCGCGCAGCCTCTGCCCTCCCGGTGAGGTGTAGCCCGGTC < 41bp 0.855997610784713 0.615791790297881 0.93757606 0.34227288 prediction 0.480411640973663 Functional Loss - CNST ENSG00000162852 UTR5 Human protein_coding chr1:246730089 chr1:246730090 . . 0 22 hm5C_associated_SNPs_69169 0 0 0 0 1 CNST chr1:246730091 5'GT 246730091 Upstream 2bp
chr16 5057472 5057472 1 + C T ESCA 5057470 + 5057450 5057490 41 ACCATTCAGCCAGCGTGCTCCGCGGAGCCCCCCACGAGGTG ACCATTCAGCCAGCGTGCTCCGTGGAGCCCCCCACGAGGTG < 41bp 0.740198254831861 0.480449576713845 0.8945751 0.8332427 prediction 0.480396509663721 Functional Loss - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5057470 chr16:5057472 synonymous SNV . 0 23 hm5C_associated_SNPs_69173 0 0 0 0 1 SEC14L5 chr16:5057487 5'GT 5057487 Upstream 16bp
chr16 5057474 5057474 1 + G C LUSC 5057470 + 5057450 5057490 41 ACCATTCAGCCAGCGTGCTCCGCGGAGCCCCCCACGAGGTG ACCATTCAGCCAGCGTGCTCCGCGCAGCCCCCCACGAGGTG < 41bp 0.740198254831861 0.45563156912684 0.8945751 0.63899857 prediction 0.480396509663721 Functional Loss - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5057470 chr16:5057474 nonsynonymous SNV 0.074 3 25 hm5C_associated_SNPs_69174 0 0 0 0 1 SEC14L5 chr16:5057487 5'GT 5057487 Upstream 14bp
chr4 1348626 1348626 1 + G A COAD 1348623 + 1348603 1348643 41 AAGTTCCTGCCGGCTGTGTGCTCGTGGATCCAGGTGAGCCT AAGTTCCTGCCGGCTGTGTGCTCATGGATCCAGGTGAGCCT < 41bp 0.740191614804556 0.498981685378896 0.1761032 0.11090267 prediction 0.480383229609112 Functional Loss - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1348623 chr4:1348626 synonymous SNV . 0 24 hm5C_associated_SNPs_69175 0 0 1 0 1 UVSSA chr4:1348635 5'GT 1348635 Upstream 10bp
chr17 61566315 61566315 1 + A C LUSC 61566314 + 61566294 61566334 41 CTCTGTAGGCTATGTAGATGCAGGGGACTCGTGGAGGTCTA CTCTGTAGGCTATGTAGATGCCGGGGACTCGTGGAGGTCTA < 41bp 0.768608439264433 0.52841959420888 0.869243 0.8764645 prediction 0.480377690111106 Functional Loss - ACE ENSG00000159640;ENSG00000264813 CDS Human other chr17:61566314 chr17:61566315 synonymous SNV . 0 22 hm5C_associated_SNPs_69176 0 0 0 0 1 ACE chr17:61566302 3'AG 61566302 Downstream 14bp
chr16 30440430 30440430 1 - G A COAD 30440432 - 30440412 30440452 41 CTGGGAACAGTTCCATCAGCCTCGGAATCTCCTCCTGGCCT CTGGGAACAGTTCCATCAGCCTTGGAATCTCCTCCTGGCCT < 41bp 0.817075344228861 0.576893252047954 0.34059486 0.21590155 prediction 0.480364184361815 Functional Loss - DCTPP1 ENSG00000179958 CDS Human protein_coding chr16:30440432 chr16:30440430 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_69178 0 0 1 0 2 DCTPP1 chr16:30440378 5'GT 30440378 Upstream 53bp
chr16 30440430 30440430 1 - G A COAD 30440432 - 30440412 30440452 41 CTGGGAACAGTTCCATCAGCCTCGGAATCTCCTCCTGGCCT CTGGGAACAGTTCCATCAGCCTTGGAATCTCCTCCTGGCCT < 41bp 0.817075344228861 0.576893252047954 0.34059486 0.21590155 prediction 0.480364184361815 Functional Loss - DCTPP1 ENSG00000179958 CDS Human protein_coding chr16:30440432 chr16:30440430 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_69178 0 0 1 0 2 DCTPP1 chr16:30440488 3'AG 30440488 Downstream 59bp
chr12 117426644 117426644 1 + G T LUAD 117426642 + 117426622 117426662 41 ACCAAGTTGCTTTTGGTGTACAGGGTCTGGGATGGGTGTAC ACCAAGTTGCTTTTGGTGTACATGGTCTGGGATGGGTGTAC < 41bp 0.740163340958337 0.384411400276175 0.40534806 0.3083952 prediction 0.480326681916674 Functional Loss - FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117426642 chr12:117426644 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_69187 0 0 0 5 1 FBXW8 chr12:117426674 5'GT 117426674 Upstream 31bp
chr2 27665507 27665507 1 + C T BLCA 27665505 + 27665485 27665525 41 TCGCGCTGATCTTGGTGGGCCACGTGAACCTGCTGCTGGGG TCGCGCTGATCTTGGTGGGCCATGTGAACCTGCTGCTGGGG < 41bp 0.740160699723903 0.49263131939542 0.3470656 0.3443172 prediction 0.480321399447807 Functional Loss - KRTCAP3 ENSG00000157992 CDS Human protein_coding chr2:27665505 chr2:27665507 synonymous SNV . 0 23 hm5C_associated_SNPs_69189 0 0 1 0 1 KRTCAP3 chr2:27665446 3'AG 27665446 Downstream 62bp
chr1 17682924 17682924 1 + G A UCEC 17682921 + 17682901 17682941 41 AGGAGCAGCAGAATGAGGGCCACGGGGAGGCCCTGCTGTTC AGGAGCAGCAGAATGAGGGCCACAGGGAGGCCCTGCTGTTC < 41bp 0.762992800932295 0.522833293496717 0.77601933 0.8080772 prediction 0.480319014871157 Functional Loss - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17682921 chr1:17682924 nonsynonymous SNV 0.431 4 24 hm5C_associated_SNPs_69190 0 0 0 0 1 PADI4 chr1:17682852 3'AG 17682852 Downstream 73bp
chr6 133767825 133767825 1 + T C LUAD 133767824 + 133767804 133767844 41 TCTTGTTGGAGGTGGTGATACTCCAGGTAGCTCCAAACTGG TCTTGTTGGAGGTGGTGATACCCCAGGTAGCTCCAAACTGG < 41bp 0.796403647295298 0.556245341781042 0.91937864 0.31537184 prediction 0.480316611028512 Functional Loss - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133767824 chr6:133767825 synonymous SNV . 0 22 hm5C_associated_SNPs_69191 0 0 0 0 2 EYA4 chr6:133767768 3'AG 133767768 Downstream 58bp
chr6 133767825 133767825 1 + T C LUAD 133767824 + 133767804 133767844 41 TCTTGTTGGAGGTGGTGATACTCCAGGTAGCTCCAAACTGG TCTTGTTGGAGGTGGTGATACCCCAGGTAGCTCCAAACTGG < 41bp 0.796403647295298 0.556245341781042 0.91937864 0.31537184 prediction 0.480316611028512 Functional Loss - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133767824 chr6:133767825 synonymous SNV . 0 22 hm5C_associated_SNPs_69191 0 0 0 0 2 EYA4 chr6:133767892 5'GT 133767892 Upstream 68bp
chr2 108872051 108872051 1 + C T SKCM 108872049 + 108872029 108872069 41 TTGTCTATGTGGCCAGAAATCCCAAGGATTGCCTGGTGTCC TTGTCTATGTGGCCAGAAATCCTAAGGATTGCCTGGTGTCC < 41bp 0.74015401987982 0.461357273254625 0.16437 0.16338187 prediction 0.480308039759639 Functional Loss - SULT1C3 ENSG00000196228 CDS Human protein_coding chr2:108872049 chr2:108872051 synonymous SNV . 0 23 hm5C_associated_SNPs_69193 0 0 0 0 1 SULT1C3 chr2:108872028 3'AG 108872028 Downstream 24bp
chr6 36075326 36075326 1 + C T rs28763973 36075324 + 36075304 36075344 41 ATGCCTACTTTGCTCAGTACCACGATCCTGATGATGAACCA ATGCCTACTTTGCTCAGTACCATGATCCTGATGATGAACCA < 41bp 0.847556990048199 0.607407981584453 0.19346377 0.2025441 prediction 0.480298016927492 Functional Loss - MAPK14 ENSG00000112062 CDS Human protein_coding chr6:36075324 chr6:36075326 nonsynonymous SNV 0.986 0 23 hm5C_associated_SNPs_69195 0 0 1 0 2 MAPK14 chr6:36075232 3'AG 36075232 Downstream 95bp
chr6 36075326 36075326 1 + C T rs28763973 36075324 + 36075304 36075344 41 ATGCCTACTTTGCTCAGTACCACGATCCTGATGATGAACCA ATGCCTACTTTGCTCAGTACCATGATCCTGATGATGAACCA < 41bp 0.847556990048199 0.607407981584453 0.19346377 0.2025441 prediction 0.480298016927492 Functional Loss - MAPK14 ENSG00000112062 CDS Human protein_coding chr6:36075324 chr6:36075326 nonsynonymous SNV 0.986 0 23 hm5C_associated_SNPs_69195 0 0 1 0 2 MAPK14 chr6:36075405 5'GT 36075405 Upstream 80bp
chr11 66258740 66258740 1 + T C LIHC 66258739 + 66258719 66258759 41 CCCAGAGCCTTCCCTGGACTCTGAGGTGACTTCCAAGCTGA CCCAGAGCCTTCCCTGGACTCCGAGGTGACTTCCAAGCTGA < 41bp 0.745858140230113 0.505717239606308 0.8467516 0.91294557 prediction 0.48028180124761 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66258739 chr11:66258740 synonymous SNV . 0 22 hm5C_associated_SNPs_69198 0 0 1 0 1 DPP3 chr11:66258724 3'AG 66258724 Downstream 17bp
chr12 2800129 2800129 1 - C T UCEC 2800132 - 2800112 2800152 41 GTCGCAGGCGTCGGCCAGCTCCTGGGTGGTGACCTCGATGA GTCGCAGGCGTCGGCCAGCTCCTAGGTGGTGACCTCGATGA < 41bp 0.745179381766009 0.505043074945135 0.80009544 0.1951361 prediction 0.480272613641748 Functional Loss - CACNA1C ENSG00000151067 CDS Human protein_coding chr12:2800132 chr12:2800129 stopgain 1.000 0 24 hm5C_associated_SNPs_69202 0 0 0 0 1 CACNA1C chr12:2800145 3'AG 2800145 Downstream 17bp
chr1 228238562 228238562 1 + G A SKCM 228238559 + 228238539 228238579 41 TCTCGGGAGTTCGCCGACGCCCGGGAGAACCGGCCAGATGC TCTCGGGAGTTCGCCGACGCCCGAGAGAACCGGCCAGATGC < 41bp 0.742557665348548 0.502428325021183 0.9128231 0.49852428 prediction 0.480258680654731 Functional Loss - WNT3A ENSG00000154342 CDS Human protein_coding chr1:228238559 chr1:228238562 synonymous SNV . 0 24 hm5C_associated_SNPs_69203 0 0 0 0 1 WNT3A chr1:228238622 5'GT 228238622 Upstream 61bp
chr1 197889133 197889133 1 + C T STAD 197889131 + 197889111 197889151 41 CCGCTCAGCCCGGAGAAGCCCGCCCTGTGCGCCGGCTGCGG CCGCTCAGCCCGGAGAAGCCCGTCCTGTGCGCCGGCTGCGG < 41bp 0.74012008596749 0.465832523081382 0.12039727 0.2133193 prediction 0.48024017193498 Functional Loss - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197889131 chr1:197889133 nonsynonymous SNV 0.876 1 23 hm5C_associated_SNPs_69209 0 0 0 0 1 LHX9 chr1:197889102 3'AG 197889102 Downstream 32bp
chr19 55105938 55105938 1 + G A SKCM 55105935 + 55105915 55105955 41 TGGGCCCCCGGACCCACGTGCAGGCAGGTGAGTCTGTCCCC TGGGCCCCCGGACCCACGTGCAGACAGGTGAGTCTGTCCCC < 41bp 0.740113502007799 0.485167920173636 0.558209 0.23062235 prediction 0.480227004015597 Functional Loss - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55105935 chr19:55105938 nonsynonymous SNV 0.339 0 24 hm5C_associated_SNPs_69213 0 0 0 0 2 LILRA1 chr19:55105906 3'AG 55105906 Downstream 33bp
chr19 55105938 55105938 1 + G A SKCM 55105935 + 55105915 55105955 41 TGGGCCCCCGGACCCACGTGCAGGCAGGTGAGTCTGTCCCC TGGGCCCCCGGACCCACGTGCAGACAGGTGAGTCTGTCCCC < 41bp 0.740113502007799 0.485167920173636 0.558209 0.23062235 prediction 0.480227004015597 Functional Loss - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55105935 chr19:55105938 nonsynonymous SNV 0.339 0 24 hm5C_associated_SNPs_69213 0 0 0 0 2 LILRA1 chr19:55105941 5'GT 55105941 Upstream 4bp
chr1 11579839 11579839 1 + C T CESC 11579837 + 11579817 11579857 41 CCCGAGGGTCTGCAGCCAGCCTCCAACACGGGCAGCCGCGG CCCGAGGGTCTGCAGCCAGCCTTCAACACGGGCAGCCGCGG < 41bp 0.740103000911153 0.459999099095684 0.95068765 0.023441017 prediction 0.480206001822306 Functional Loss - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11579837 chr1:11579839 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_69215 0 0 0 0 1 DISP3 chr1:11579937 5'GT 11579937 Upstream 99bp
chr5 43277234 43277234 1 + C T SKCM 43277232 + 43277212 43277252 41 AGGCTACTATCCCGAGAAATCTCCAGCATGGAAAAGCTGCA AGGCTACTATCCCGAGAAATCTTCAGCATGGAAAAGCTGCA < 41bp 0.74010203401833 0.430141512638791 0.948452 0.08188656 prediction 0.480204068036659 Functional Loss - NIM1K ENSG00000177453 CDS Human protein_coding chr5:43277232 chr5:43277234 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_69217 0 0 0 0 1 NIM1K chr5:43277159 3'AG 43277159 Downstream 76bp
chr16 10996626 10996626 1 + G A SKCM 10996623 + 10996603 10996643 41 GCTCTGGCAAATCTCTGAGGCTGGAACAGGGGTCTCCAGTA GCTCTGGCAAATCTCTGAGGCTGAAACAGGGGTCTCCAGTA < 41bp 0.748594790342457 0.508497778539792 0.09867442 0.07219541 prediction 0.480194023605331 Functional Loss - CIITA ENSG00000179583 CDS Human protein_coding chr16:10996623 chr16:10996626 nonsynonymous SNV 0.143 3 24 hm5C_associated_SNPs_69219 0 0 0 0 1 CIITA chr16:10996658 5'GT 10996658 Upstream 33bp
chr15 75094676 75094676 1 + T C STAD 75094675 + 75094655 75094695 41 CCTCCCCCTGGCCACAGCCCCTGAAGGACGTCGTCCCTCGG CCTCCCCCTGGCCACAGCCCCCGAAGGACGTCGTCCCTCGG < 41bp 0.745396377358398 0.505301641286014 0.4813802 0.42269072 prediction 0.480189472144769 Functional Loss - CSK ENSG00000103653 CDS Human protein_coding chr15:75094675 chr15:75094676 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_69221 0 0 1 0 1 CSK chr15:75094672 3'AG 75094672 Downstream 5bp
chr11 63970972 63970972 1 + C T UCEC 63970970 + 63970950 63970990 41 TGATGGCGCAGTACAACCGGCACGACAGCCCCGAAGATGTG TGATGGCGCAGTACAACCGGCATGACAGCCCCGAAGATGTG < 41bp 0.740093219172768 0.460542336373295 0.24922177 0.31550938 prediction 0.480186438345537 Functional Loss - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63970970 chr11:63970972 stopgain . 0 23 hm5C_associated_SNPs_69222 0 0 1 0 1 STIP1 chr11:63970922 3'AG 63970922 Downstream 51bp
chr17 61765906 61765906 1 + C T UCEC 61765904 + 61765884 61765924 41 CAGCCCATCCTTCCGGAAATCACGAATGTCCCGTGCCCAGA CAGCCCATCCTTCCGGAAATCATGAATGTCCCGTGCCCAGA < 41bp 0.843353653152039 0.603261158242816 0.3974798 0.28432694 prediction 0.480184989818446 Functional Loss - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61765904 chr17:61765906 stopgain 0.975 1 23 hm5C_associated_SNPs_69223 0 0 1 0 2 MAP3K3 chr17:61765887 3'AG 61765887 Downstream 20bp
chr17 61765906 61765906 1 + C T UCEC 61765904 + 61765884 61765924 41 CAGCCCATCCTTCCGGAAATCACGAATGTCCCGTGCCCAGA CAGCCCATCCTTCCGGAAATCATGAATGTCCCGTGCCCAGA < 41bp 0.843353653152039 0.603261158242816 0.3974798 0.28432694 prediction 0.480184989818446 Functional Loss - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61765904 chr17:61765906 stopgain 0.975 1 23 hm5C_associated_SNPs_69223 0 0 1 0 2 MAP3K3 chr17:61765954 5'GT 61765954 Upstream 49bp
chr18 61170631 61170631 1 + G T LUAD 61170628 + 61170608 61170648 41 CCCAGCACCATGGCCAATGCCAAGGTCAAACTCTCCATTCC CCCAGCACCATGGCCAATGCCAATGTCAAACTCTCCATTCC < 41bp 0.740082477359478 0.345155258283944 0.6369368 0.06816134 prediction 0.480164954718956 Functional Loss - SERPINB5 ENSG00000206075 CDS Human protein_coding chr18:61170628 chr18:61170631 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_69225 0 0 0 0 1 SERPINB5 chr18:61170563 3'AG 61170563 Downstream 69bp
chr19 46025752 46025752 1 + G A rs200872555 46025749 + 46025729 46025769 41 CCACCCCCTGCACCCCCTCTCCCGGCAGCACAGGGCCCTGG CCACCCCCTGCACCCCCTCTCCCAGCAGCACAGGGCCCTGG < 41bp 0.76087577238595 0.520795417123621 0.87337947 0.5882933 prediction 0.480160710524657 Functional Loss - VASP ENSG00000125753 CDS Human protein_coding chr19:46025749 chr19:46025752 synonymous SNV . 0 24 hm5C_associated_SNPs_69226 0 0 1 0 1 VASP chr19:46025839 5'GT 46025839 Upstream 88bp
chr15 90768364 90768364 1 + C T COAD 90768362 + 90768342 90768382 41 ACCAGCGCGTGGCTGTACACCGCGTCCCTGGCCTGCACCAC ACCAGCGCGTGGCTGTACACCGTGTCCCTGGCCTGCACCAC < 41bp 0.770967341601123 0.530887561811939 0.5392636 0.35357928 prediction 0.480159559578368 Functional Loss - SEMA4B ENSG00000185033 CDS Human protein_coding chr15:90768362 chr15:90768364 synonymous SNV . 0 23 hm5C_associated_SNPs_69227 0 0 0 0 1 SEMA4B chr15:90768410 5'GT 90768410 Upstream 47bp
chr3 45077096 45077096 1 + G C HNSC 45077092 + 45077072 45077112 41 AAGACCTTCCACGAGGCCAGCGAGGACTGCATCTCGCGCGG AAGACCTTCCACGAGGCCAGCGAGCACTGCATCTCGCGCGG < 41bp 0.844380561852408 0.604303060059056 0.6896202 0.20858023 prediction 0.480155003586704 Functional Loss - CLEC3B ENSG00000163815 CDS Human protein_coding chr3:45077092 chr3:45077096 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_69229 0 0 0 0 1 CLEC3B chr3:45077016 3'AG 45077016 Downstream 81bp
chr12 50152237 50152237 1 + G T COAD 50152235 + 50152215 50152255 41 ACCCTCAGTGCACTCTATGCCAGGCGCCGTAGCTACCTCTT ACCCTCAGTGCACTCTATGCCATGCGCCGTAGCTACCTCTT < 41bp 0.740076666753763 0.380560720268206 0.90212417 0.07589361 prediction 0.480153333507527 Functional Loss - TMBIM6 ENSG00000139644 CDS Human protein_coding chr12:50152235 chr12:50152237 nonsynonymous SNV 0.975 3 23 hm5C_associated_SNPs_69230 0 0 1 0 2 TMBIM6 chr12:50152166 3'AG 50152166 Downstream 72bp
chr12 50152237 50152237 1 + G T COAD 50152235 + 50152215 50152255 41 ACCCTCAGTGCACTCTATGCCAGGCGCCGTAGCTACCTCTT ACCCTCAGTGCACTCTATGCCATGCGCCGTAGCTACCTCTT < 41bp 0.740076666753763 0.380560720268206 0.90212417 0.07589361 prediction 0.480153333507527 Functional Loss - TMBIM6 ENSG00000139644 CDS Human protein_coding chr12:50152235 chr12:50152237 nonsynonymous SNV 0.975 3 23 hm5C_associated_SNPs_69230 0 0 1 0 2 TMBIM6 chr12:50152263 5'GT 50152263 Upstream 27bp
chr17 40835940 40835940 1 + G A UCEC 40835937 + 40835917 40835957 41 CGCCGAGATTCGCCAGGCTGCACGGTGAGCTCCGCGGAACA CGCCGAGATTCGCCAGGCTGCACAGTGAGCTCCGCGGAACA < 41bp 0.740075245455681 0.492805842179625 0.42669177 0.36227262 prediction 0.480150490911363 Functional Loss - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40835937 chr17:40835940 nonsynonymous SNV 0.698 4 24 hm5C_associated_SNPs_69232 0 0 0 0 1 CNTNAP1 chr17:40835940 5'GT 40835940 Upstream 1bp
chr10 72489879 72489879 1 + G A rs144469426 72489876 + 72489856 72489896 41 AGTCCCTGAGCCTGATCGAGCGCGGGAACCCCTCACGCAGC AGTCCCTGAGCCTGATCGAGCGCAGGAACCCCTCACGCAGC < 41bp 0.769437557867887 0.529366615033073 0.9100081 0.6579988 prediction 0.480141885669628 Functional Loss - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72489876 chr10:72489879 nonsynonymous SNV 0.992 5 24 hm5C_associated_SNPs_69233 0 0 1 0 1 ADAMTS14 chr10:72489858 3'AG 72489858 Downstream 22bp
chr6 397219 397219 1 + G A COAD 397216 + 397196 397236 41 GTCCCATGACGTTTGGACCCCGCGGCCACCACTGGCAAGGC GTCCCATGACGTTTGGACCCCGCAGCCACCACTGGCAAGGC < 41bp 0.74802032394784 0.507954362862509 0.32858425 0.17788771 prediction 0.48013192217066 Functional Loss - IRF4 ENSG00000137265 CDS Human protein_coding chr6:397216 chr6:397219 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_69235 0 0 0 0 1 IRF4 chr6:397252 5'GT 397252 Upstream 34bp
chr6 18217997 18217997 1 + C T HNSC 18217995 + 18217975 18218015 41 TCCCACAAAGTATTTTGTCACTCGGTGGAGCACAGACCCAT TCCCACAAAGTATTTTGTCACTTGGTGGAGCACAGACCCAT < 41bp 0.740065878869237 0.447717536729244 0.2823534 0.3585772 prediction 0.480131757738474 Functional Loss - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18217995 chr6:18217997 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_69236 0 0 1 0 1 KDM1B chr6:18217964 3'AG 18217964 Downstream 34bp
chrX 150885793 150885793 1 + G T GBM 150885791 + 150885771 150885811 41 GGGGTGCCTCCCAGAAGAAGCAGAAGTTGGAACAAAAAGCT GGGGTGCCTCCCAGAAGAAGCATAAGTTGGAACAAAAAGCT < 41bp 0.740062444780834 0.388323359717419 0.5733703 0.27493328 prediction 0.480124889561667 Functional Loss - FATE1 ENSG00000147378 CDS Human protein_coding chrX:150885791 chrX:150885793 nonsynonymous SNV 0.030 1 23 hm5C_associated_SNPs_69239 0 0 0 0 2 FATE1 chrX:150885744 3'AG 150885744 Downstream 50bp
chrX 150885793 150885793 1 + G T GBM 150885791 + 150885771 150885811 41 GGGGTGCCTCCCAGAAGAAGCAGAAGTTGGAACAAAAAGCT GGGGTGCCTCCCAGAAGAAGCATAAGTTGGAACAAAAAGCT < 41bp 0.740062444780834 0.388323359717419 0.5733703 0.27493328 prediction 0.480124889561667 Functional Loss - FATE1 ENSG00000147378 CDS Human protein_coding chrX:150885791 chrX:150885793 nonsynonymous SNV 0.030 1 23 hm5C_associated_SNPs_69239 0 0 0 0 2 FATE1 chrX:150885871 5'GT 150885871 Upstream 79bp
chr21 15591970 15591970 1 + A C STAD 15591966 + 15591946 15591986 41 ATTTGTCTGCTTTAAACACCCAGAATCGGTGTCTTATGCCA ATTTGTCTGCTTTAAACACCCAGACTCGGTGTCTTATGCCA < 41bp 0.740059120954108 0.391837902640778 0.17388031 0.19773212 prediction 0.480118241908216 Functional Loss - RBM11 ENSG00000185272 CDS Human protein_coding chr21:15591966 chr21:15591970 nonsynonymous SNV 0.989 2 25 hm5C_associated_SNPs_69241 0 0 0 0 3 RBM11 chr21:15591874 3'AG 15591874 Downstream 97bp
chr21 15591970 15591970 1 + A C STAD 15591966 + 15591946 15591986 41 ATTTGTCTGCTTTAAACACCCAGAATCGGTGTCTTATGCCA ATTTGTCTGCTTTAAACACCCAGACTCGGTGTCTTATGCCA < 41bp 0.740059120954108 0.391837902640778 0.17388031 0.19773212 prediction 0.480118241908216 Functional Loss - RBM11 ENSG00000185272 CDS Human protein_coding chr21:15591966 chr21:15591970 nonsynonymous SNV 0.989 2 25 hm5C_associated_SNPs_69241 0 0 0 0 3 RBM11 chr21:15591884 3'AG 15591884 Downstream 87bp
chr21 15591970 15591970 1 + A C STAD 15591966 + 15591946 15591986 41 ATTTGTCTGCTTTAAACACCCAGAATCGGTGTCTTATGCCA ATTTGTCTGCTTTAAACACCCAGACTCGGTGTCTTATGCCA < 41bp 0.740059120954108 0.391837902640778 0.17388031 0.19773212 prediction 0.480118241908216 Functional Loss - RBM11 ENSG00000185272 CDS Human protein_coding chr21:15591966 chr21:15591970 nonsynonymous SNV 0.989 2 25 hm5C_associated_SNPs_69241 0 0 0 0 3 RBM11 chr21:15592046 5'GT 15592046 Upstream 77bp
chr6 36260888 36260888 1 + G A LUAD 36260885 + 36260865 36260905 41 GTGTACTGTGGCCTCATCCCCCCGACTTACCGCGGTGTGGT GTGTACTGTGGCCTCATCCCCCCAACTTACCGCGGTGTGGT < 41bp 0.764248959889204 0.524190096325419 0.088133365 0.055443585 prediction 0.480117727127572 Functional Loss - PNPLA1 ENSG00000180316 CDS Human protein_coding chr6:36260885 chr6:36260888 synonymous SNV . 0 24 hm5C_associated_SNPs_69242 0 0 0 0 2 PNPLA1 chr6:36260838 3'AG 36260838 Downstream 51bp
chr6 36260888 36260888 1 + G A LUAD 36260885 + 36260865 36260905 41 GTGTACTGTGGCCTCATCCCCCCGACTTACCGCGGTGTGGT GTGTACTGTGGCCTCATCCCCCCAACTTACCGCGGTGTGGT < 41bp 0.764248959889204 0.524190096325419 0.088133365 0.055443585 prediction 0.480117727127572 Functional Loss - PNPLA1 ENSG00000180316 CDS Human protein_coding chr6:36260885 chr6:36260888 synonymous SNV . 0 24 hm5C_associated_SNPs_69242 0 0 0 0 2 PNPLA1 chr6:36260903 5'GT 36260903 Upstream 16bp
chr20 54974411 54974411 1 + C T GBM 54974409 + 54974389 54974429 41 GGACGAACACTGGTCAGATACACGGGTATGTGAGACGTTGA GGACGAACACTGGTCAGATACATGGGTATGTGAGACGTTGA < 41bp 0.797638710275386 0.557579910447747 0.31833622 0.36874378 prediction 0.480117599655278 Functional Loss - CSTF1 ENSG00000101138 CDS Human protein_coding chr20:54974409 chr20:54974411 nonsynonymous SNV 0.819 5 23 hm5C_associated_SNPs_69243 0 0 1 0 1 CSTF1 chr20:54974413 5'GT 54974413 Upstream 3bp
chr17 45286881 45286881 1 + T C UCEC 45286880 + 45286860 45286900 41 ACCAGCCCCTGCCCCAGCTCCTGAGGCTCCCAAGGAACCTG ACCAGCCCCTGCCCCAGCTCCCGAGGCTCCCAAGGAACCTG < 41bp 0.753512157420418 0.513453929062954 0.61891353 0.9002347 prediction 0.480116456714929 Functional Loss - MYL4 ENSG00000198336 CDS Human protein_coding chr17:45286880 chr17:45286881 synonymous SNV . 0 22 hm5C_associated_SNPs_69244 0 0 1 0 1 MYL4 chr17:45286923 5'GT 45286923 Upstream 43bp
chr11 61490976 61490976 1 + G A UCEC 61490973 + 61490953 61490993 41 GTCCTCTGCGTCTTCGACCCCACGGGCCGCACCTTTGTCAA GTCCTCTGCGTCTTCGACCCCACAGGCCGCACCTTTGTCAA < 41bp 0.74005613339734 0.494800218612025 0.044695497 0.039369166 prediction 0.480112266794681 Functional Loss - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61490973 chr11:61490976 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_69247 0 0 0 0 2 DAGLA chr11:61490906 3'AG 61490906 Downstream 71bp
chr11 61490976 61490976 1 + G A UCEC 61490973 + 61490953 61490993 41 GTCCTCTGCGTCTTCGACCCCACGGGCCGCACCTTTGTCAA GTCCTCTGCGTCTTCGACCCCACAGGCCGCACCTTTGTCAA < 41bp 0.74005613339734 0.494800218612025 0.044695497 0.039369166 prediction 0.480112266794681 Functional Loss - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61490973 chr11:61490976 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_69247 0 0 0 0 2 DAGLA chr11:61491044 5'GT 61491044 Upstream 69bp
chr6 109764076 109764076 1 + C T LGG 109764074 + 109764054 109764094 41 TCATGATGCCTATCTTGAAACTCGGGACTTCAAGGTGAGGA TCATGATGCCTATCTTGAAACTTGGGACTTCAAGGTGAGGA < 41bp 0.740054979420951 0.466025077494547 0.05967176 0.04118976 prediction 0.480109958841902 Functional Loss - SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109764074 chr6:109764076 nonsynonymous SNV 0.058 2 23 hm5C_associated_SNPs_69248 0 0 1 0 1 SMPD2 chr6:109764087 5'GT 109764087 Upstream 12bp
chr18 13103524 13103524 1 + C T LGG 13103522 + 13103502 13103542 41 TTTTAGAGAGCTGTCTAGAACTCGAGAATCATGGCACCACA TTTTAGAGAGCTGTCTAGAACTTGAGAATCATGGCACCACA < 41bp 0.740040261551162 0.462909624601977 0.23774049 0.08761108 prediction 0.480080523102324 Functional Loss - CEP192 ENSG00000101639 CDS Human protein_coding chr18:13103522 chr18:13103524 synonymous SNV . 0 23 hm5C_associated_SNPs_69252 0 0 1 0 2 CEP192 chr18:13103508 3'AG 13103508 Downstream 17bp
chr18 13103524 13103524 1 + C T LGG 13103522 + 13103502 13103542 41 TTTTAGAGAGCTGTCTAGAACTCGAGAATCATGGCACCACA TTTTAGAGAGCTGTCTAGAACTTGAGAATCATGGCACCACA < 41bp 0.740040261551162 0.462909624601977 0.23774049 0.08761108 prediction 0.480080523102324 Functional Loss - CEP192 ENSG00000101639 CDS Human protein_coding chr18:13103522 chr18:13103524 synonymous SNV . 0 23 hm5C_associated_SNPs_69252 0 0 1 0 2 CEP192 chr18:13103587 5'GT 13103587 Upstream 64bp
chr6 131904242 131904242 1 + T C UCEC 131904241 + 131904221 131904261 41 CATTAAATACTTTTCAATGACTGAAGTGGACAGACTAGGAA CATTAAATACTTTTCAATGACCGAAGTGGACAGACTAGGAA < 41bp 0.756265208350961 0.516233595954258 0.08778086 0.11310652 prediction 0.480063224793407 Functional Loss - ARG1 ENSG00000118520 CDS Human protein_coding chr6:131904241 chr6:131904242 synonymous SNV . 0 22 hm5C_associated_SNPs_69256 0 0 0 0 3 ARG1 chr6:131904200 3'AG 131904200 Downstream 43bp
chr6 131904242 131904242 1 + T C UCEC 131904241 + 131904221 131904261 41 CATTAAATACTTTTCAATGACTGAAGTGGACAGACTAGGAA CATTAAATACTTTTCAATGACCGAAGTGGACAGACTAGGAA < 41bp 0.756265208350961 0.516233595954258 0.08778086 0.11310652 prediction 0.480063224793407 Functional Loss - ARG1 ENSG00000118520 CDS Human protein_coding chr6:131904241 chr6:131904242 synonymous SNV . 0 22 hm5C_associated_SNPs_69256 0 0 0 0 3 ARG1 chr6:131904245 5'GT 131904245 Upstream 4bp
chr6 131904242 131904242 1 + T C UCEC 131904241 + 131904221 131904261 41 CATTAAATACTTTTCAATGACTGAAGTGGACAGACTAGGAA CATTAAATACTTTTCAATGACCGAAGTGGACAGACTAGGAA < 41bp 0.756265208350961 0.516233595954258 0.08778086 0.11310652 prediction 0.480063224793407 Functional Loss - ARG1 ENSG00000118520 CDS Human protein_coding chr6:131904241 chr6:131904242 synonymous SNV . 0 22 hm5C_associated_SNPs_69256 0 0 0 0 3 ARG1 chr6:131904304 5'GT 131904304 Upstream 63bp
chr6 31525893 31525893 1 + G T SARC 31525891 + 31525871 31525911 41 CCCAGAAGTGCCAGCAGCAGCAGCGAGAAGCAGAGGGATCC CCCAGAAGTGCCAGCAGCAGCATCGAGAAGCAGAGGGATCC < 41bp 0.74002802999492 0.454661685464133 0.6806037 0.22165087 prediction 0.48005605998984 Functional Loss - NFKBIL1 ENSG00000204498 CDS Human protein_coding chr6:31525891 chr6:31525893 nonsynonymous SNV 0.799 2 23 hm5C_associated_SNPs_69260 0 0 0 0 1 NFKBIL1 chr6:31525799 3'AG 31525799 Downstream 95bp
chr5 178503517 178503517 1 + G T UCEC 178503515 + 178503495 178503535 41 GGTTGCACCTGGACTCTGCCCAGAGGGCCTTGTACCGGGAG GGTTGCACCTGGACTCTGCCCATAGGGCCTTGTACCGGGAG < 41bp 0.90260832532732 0.662582705500803 0.90686715 0.5479361 prediction 0.480051239653036 Functional Loss - ZNF354C ENSG00000177932 CDS Human protein_coding chr5:178503515 chr5:178503517 nonsynonymous SNV 0.329 3 23 hm5C_associated_SNPs_69261 0 0 0 0 2 ZNF354C chr5:178503446 3'AG 178503446 Downstream 72bp
chr5 178503517 178503517 1 + G T UCEC 178503515 + 178503495 178503535 41 GGTTGCACCTGGACTCTGCCCAGAGGGCCTTGTACCGGGAG GGTTGCACCTGGACTCTGCCCATAGGGCCTTGTACCGGGAG < 41bp 0.90260832532732 0.662582705500803 0.90686715 0.5479361 prediction 0.480051239653036 Functional Loss - ZNF354C ENSG00000177932 CDS Human protein_coding chr5:178503515 chr5:178503517 nonsynonymous SNV 0.329 3 23 hm5C_associated_SNPs_69261 0 0 0 0 2 ZNF354C chr5:178503572 5'GT 178503572 Upstream 56bp
chr11 65618622 65618622 1 + G A COAD 65618619 + 65618599 65618639 41 TGCGGGCCGACCGCGTCATGCGCGCCCACAAGTGTACGCAG TGCGGGCCGACCGCGTCATGCGCACCCACAAGTGTACGCAG < 41bp 0.740021741161179 0.488564674806062 0.24024606 0.0748398 prediction 0.480043482322358 Functional Loss - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65618619 chr11:65618622 nonsynonymous SNV 0.993 0 24 hm5C_associated_SNPs_69263 0 0 0 0 1 SNX32 chr11:65618526 3'AG 65618526 Downstream 97bp
chr1 1421514 1421514 1 + G A UCEC 1421511 + 1421491 1421531 41 CCAGCCTGGAAGCACGGGTGCGCGACATCGCCATAGCAACC CCAGCCTGGAAGCACGGGTGCGCAACATCGCCATAGCAACC < 41bp 0.757824899587564 0.517814961968145 0.6491612 0.22067037 prediction 0.480019875238839 Functional Loss - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1421511 chr1:1421514 nonsynonymous SNV 0.001 4 24 hm5C_associated_SNPs_69268 0 0 1 0 1 ATAD3B chr1:1421490 3'AG 1421490 Downstream 25bp
chr17 37358661 37358661 1 + G A UCEC 37358658 + 37358638 37358678 41 GCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAG GCTCGATGCCGGAAAAACACCTTAGCCCGCCGGAAGGGCAG < 41bp 0.742084219085517 0.502076024057191 0.12089035 0.047562808 prediction 0.480016390056651 Functional Loss - RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358658 chr17:37358661 synonymous SNV . 0 24 hm5C_associated_SNPs_69270 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 92bp
chr17 37358661 37358661 1 + G A UCEC 37358658 + 37358638 37358678 41 GCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAG GCTCGATGCCGGAAAAACACCTTAGCCCGCCGGAAGGGCAG < 41bp 0.742084219085517 0.502076024057191 0.12089035 0.047562808 prediction 0.480016390056651 Functional Loss - RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358658 chr17:37358661 synonymous SNV . 0 24 hm5C_associated_SNPs_69270 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 32bp
chr7 143048760 143048760 1 + C T SARC 143048758 + 143048738 143048778 41 CCCCTTGCCAGCTTCCGGAACACGACTTCAACTCGAAAGAG CCCCTTGCCAGCTTCCGGAACATGACTTCAACTCGAAAGAG < 41bp 0.778187991751899 0.538184354925705 0.11068773 0.121753365 prediction 0.480007273652388 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143048758 chr7:143048760 nonsynonymous SNV 0.213 5 23 hm5C_associated_SNPs_69272 0 0 0 0 1 CLCN1 chr7:143048687 3'AG 143048687 Downstream 74bp
chr12 130833936 130833936 1 + A C LUSC 130833935 + 130833915 130833955 41 AGACAGAAGAACATAAATTTCAAGAACAAGTTTCCAAAGAA AGACAGAAGAACATAAATTTCCAGAACAAGTTTCCAAAGAA < 41bp 0.739984936015429 0.490254662701896 0.26018897 0.30621886 prediction 0.479969872030857 Functional Loss - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130833935 chr12:130833936 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_69275 0 0 0 0 1 PIWIL1 chr12:130833981 5'GT 130833981 Upstream 46bp
chr14 93043734 93043734 1 + G A LUSC 93043731 + 93043711 93043751 41 CTGGTTCGCCGGGACAGCAGCTCGAAGCAGCTGGTGCTCTG CTGGTTCGCCGGGACAGCAGCTCAAAGCAGCTGGTGCTCTG < 41bp 0.755409871698495 0.51542720036152 0.5285837 0.85243356 prediction 0.479965342673951 Functional Loss - RIN3 ENSG00000100599 CDS Human protein_coding chr14:93043731 chr14:93043734 synonymous SNV . 0 24 hm5C_associated_SNPs_69276 0 0 0 0 2 RIN3 chr14:93043705 3'AG 93043705 Downstream 30bp
chr14 93043734 93043734 1 + G A LUSC 93043731 + 93043711 93043751 41 CTGGTTCGCCGGGACAGCAGCTCGAAGCAGCTGGTGCTCTG CTGGTTCGCCGGGACAGCAGCTCAAAGCAGCTGGTGCTCTG < 41bp 0.755409871698495 0.51542720036152 0.5285837 0.85243356 prediction 0.479965342673951 Functional Loss - RIN3 ENSG00000100599 CDS Human protein_coding chr14:93043731 chr14:93043734 synonymous SNV . 0 24 hm5C_associated_SNPs_69276 0 0 0 0 2 RIN3 chr14:93043822 5'GT 93043822 Upstream 89bp
chr5 140802665 140802665 1 + C T CESC 140802663 + 140802643 140802683 41 CTCTTCGCGGTGGGGGAGCACACGGGCGAGGTGCGTACAGC CTCTTCGCGGTGGGGGAGCACATGGGCGAGGTGCGTACAGC < 41bp 0.754578849762993 0.514598976628188 0.9022237 0.89590716 prediction 0.479959746269609 Functional Loss - PCDHGA11 ENSG00000253873 CDS Human protein_coding chr5:140802663 chr5:140802665 nonsynonymous SNV 0.686 3 23 hm5C_associated_SNPs_69277 0 0 0 0 1 PCDHGA11 chr5:140802672 5'GT 140802672 Upstream 8bp
chr19 11144114 11144114 1 + G T LUAD 11144112 + 11144092 11144132 41 GACCAGAAGGTGATCCAGGCCGGCATGTTCGACCAGAAGTC GACCAGAAGGTGATCCAGGCCGTCATGTTCGACCAGAAGTC < 41bp 0.739975300708034 0.423204270117898 0.78984666 0.45631912 prediction 0.479950601416068 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11144112 chr19:11144114 nonsynonymous SNV 0.982 4 23 hm5C_associated_SNPs_69278 0 0 1 0 1 SMARCA4 chr19:11144193 5'GT 11144193 Upstream 80bp
chr20 43246953 43246953 1 + A T rs181100970 43246949 + 43246929 43246969 41 GACAGGTGGAGGGAAGCGCCCCAGACAAGGAAGCTGGCAAC GACAGGTGGAGGGAAGCGCCCCAGTCAAGGAAGCTGGCAAC < 41bp 0.739975227574385 0.436727522840465 0.26409757 0.13865164 prediction 0.479950455148771 Functional Loss - PKIG ENSG00000168734 CDS Human protein_coding chr20:43246949 chr20:43246953 nonsynonymous SNV 0.907 2 25 hm5C_associated_SNPs_69279 0 0 0 0 1 PKIG chr20:43246926 3'AG 43246926 Downstream 28bp
chr17 1680560 1680560 1 + G T UCEC 1680557 + 1680537 1680577 41 AAGCTGACTCAGGTGGAACACCGGGCTGGCTTTGAGTGGAA AAGCTGACTCAGGTGGAACACCGTGCTGGCTTTGAGTGGAA < 41bp 0.739974301708199 0.343679090356897 0.86978495 0.45527804 prediction 0.479948603416399 Functional Loss - SERPINF1 ENSG00000132386 CDS Human protein_coding chr17:1680557 chr17:1680560 synonymous SNV . 0 24 hm5C_associated_SNPs_69280 0 0 1 0 1 SERPINF1 chr17:1680481 3'AG 1680481 Downstream 80bp
chr13 52313201 52313201 1 + C T LUSC 52313199 + 52313179 52313219 41 TCTCAGGTGGGGTGACCGCTCTCTGTTGGGACCCAGTCCAG TCTCAGGTGGGGTGACCGCTCTTTGTTGGGACCCAGTCCAG < 41bp 0.739973242600789 0.450498641444515 0.01653999 0.016816795 prediction 0.479946485201578 Functional Loss - WDFY2 ENSG00000139668 CDS Human protein_coding chr13:52313199 chr13:52313201 synonymous SNV . 0 23 hm5C_associated_SNPs_69281 0 0 0 2 1 WDFY2 chr13:52313185 3'AG 52313185 Downstream 17bp
chr2 118579562 118579562 1 + T C READ 118579561 + 118579541 118579581 41 AATGGGTGGCAGTAACAGATCTGCTGAAGCACAGAAACTTG AATGGGTGGCAGTAACAGATCCGCTGAAGCACAGAAACTTG < 41bp 0.739972024983723 0.499454841690446 0.09791112 0.13514611 prediction 0.479944049967446 Functional Loss - DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579561 chr2:118579562 synonymous SNV . 0 22 hm5C_associated_SNPs_69282 0 0 1 0 1 DDX18 chr2:118579637 5'GT 118579637 Upstream 76bp
chr20 13797171 13797171 1 + G A COAD 13797168 + 13797148 13797188 41 TGCTGCATCGAGACACAATGCTGGCAGCTGCGGCAGTGTAC TGCTGCATCGAGACACAATGCTGACAGCTGCGGCAGTGTAC < 41bp 0.747176723362429 0.507210945001227 0.40479335 0.33336723 prediction 0.479931556722405 Functional Loss - NDUFAF5 ENSG00000101247 CDS Human protein_coding chr20:13797168 chr20:13797171 nonsynonymous SNV 0.870 5 24 hm5C_associated_SNPs_69284 0 0 1 0 2 NDUFAF5 chr20:13797109 3'AG 13797109 Downstream 63bp
chr20 13797171 13797171 1 + G A COAD 13797168 + 13797148 13797188 41 TGCTGCATCGAGACACAATGCTGGCAGCTGCGGCAGTGTAC TGCTGCATCGAGACACAATGCTGACAGCTGCGGCAGTGTAC < 41bp 0.747176723362429 0.507210945001227 0.40479335 0.33336723 prediction 0.479931556722405 Functional Loss - NDUFAF5 ENSG00000101247 CDS Human protein_coding chr20:13797168 chr20:13797171 nonsynonymous SNV 0.870 5 24 hm5C_associated_SNPs_69284 0 0 1 0 2 NDUFAF5 chr20:13797192 5'GT 13797192 Upstream 22bp
chr5 36177320 36177320 1 + G T UCEC 36177318 + 36177298 36177338 41 TGCTAAAGAATGACTGCTTTCAGGAATTTTTCCAGCTCAAC TGCTAAAGAATGACTGCTTTCATGAATTTTTCCAGCTCAAC < 41bp 0.890469099015341 0.65050788121025 0.91079897 0.39648527 prediction 0.479922435610181 Functional Loss - SKP2 ENSG00000145604 CDS Human protein_coding chr5:36177318 chr5:36177320 nonsynonymous SNV 0.971 0 23 hm5C_associated_SNPs_69285 0 0 1 0 2 SKP2 chr5:36177287 3'AG 36177287 Downstream 34bp
chr5 36177320 36177320 1 + G T UCEC 36177318 + 36177298 36177338 41 TGCTAAAGAATGACTGCTTTCAGGAATTTTTCCAGCTCAAC TGCTAAAGAATGACTGCTTTCATGAATTTTTCCAGCTCAAC < 41bp 0.890469099015341 0.65050788121025 0.91079897 0.39648527 prediction 0.479922435610181 Functional Loss - SKP2 ENSG00000145604 CDS Human protein_coding chr5:36177318 chr5:36177320 nonsynonymous SNV 0.971 0 23 hm5C_associated_SNPs_69285 0 0 1 0 2 SKP2 chr5:36177394 5'GT 36177394 Upstream 75bp
chr22 40055735 40055735 1 + T C LUAD 40055734 + 40055714 40055754 41 GAGGACTGGAACGTCGTTCTCTACAATGGCATGGCCTCCAC GAGGACTGGAACGTCGTTCTCCACAATGGCATGGCCTCCAC < 41bp 0.739959514038376 0.476413260475216 0.9238465 0.074623734 prediction 0.479919028076753 Functional Loss - CACNA1I ENSG00000100346 CDS Human protein_coding chr22:40055734 chr22:40055735 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_69286 0 0 0 0 1 CACNA1I chr22:40055702 3'AG 40055702 Downstream 34bp
chr10 71005968 71005968 1 + C T PAAD 71005966 + 71005946 71005986 41 CACTAAGGGCAAGATCGAAACACGGCACGTGGCTGCCATGG CACTAAGGGCAAGATCGAAACATGGCACGTGGCTGCCATGG < 41bp 0.796471158160699 0.556517904816334 0.26442996 0.22132945 prediction 0.47990650668873 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71005966 chr10:71005968 nonsynonymous SNV 0.934 3 23 hm5C_associated_SNPs_69290 0 0 0 0 1 HKDC1 chr10:71005990 5'GT 71005990 Upstream 23bp
chr22 50928004 50928004 1 + C T CESC 50928002 + 50927982 50928022 41 CACTCCTTCTACCCCTGGCACACGGGCCGCGACTACCAGCA CACTCCTTCTACCCCTGGCACATGGGCCGCGACTACCAGCA < 41bp 0.770449508024138 0.530496351852016 0.060310245 0.08774531 prediction 0.479906312344243 Functional Loss - MIOX ENSG00000100253 CDS Human protein_coding chr22:50928002 chr22:50928004 nonsynonymous SNV 0.314 1 23 hm5C_associated_SNPs_69291 0 0 0 0 3 MIOX chr22:50927961 3'AG 50927961 Downstream 44bp
chr22 50928004 50928004 1 + C T CESC 50928002 + 50927982 50928022 41 CACTCCTTCTACCCCTGGCACACGGGCCGCGACTACCAGCA CACTCCTTCTACCCCTGGCACATGGGCCGCGACTACCAGCA < 41bp 0.770449508024138 0.530496351852016 0.060310245 0.08774531 prediction 0.479906312344243 Functional Loss - MIOX ENSG00000100253 CDS Human protein_coding chr22:50928002 chr22:50928004 nonsynonymous SNV 0.314 1 23 hm5C_associated_SNPs_69291 0 0 0 0 3 MIOX chr22:50928059 5'GT 50928059 Upstream 56bp
chr22 50928004 50928004 1 + C T CESC 50928002 + 50927982 50928022 41 CACTCCTTCTACCCCTGGCACACGGGCCGCGACTACCAGCA CACTCCTTCTACCCCTGGCACATGGGCCGCGACTACCAGCA < 41bp 0.770449508024138 0.530496351852016 0.060310245 0.08774531 prediction 0.479906312344243 Functional Loss - MIOX ENSG00000100253 CDS Human protein_coding chr22:50928002 chr22:50928004 nonsynonymous SNV 0.314 1 23 hm5C_associated_SNPs_69291 0 0 0 0 3 MIOX chr22:50928073 5'GT 50928073 Upstream 70bp
chr1 203472823 203472823 1 + G A rs572106049 203472820 + 203472800 203472840 41 CAGCGCCTACTTCTGCCTGCCTCGGCTCCCCATCGGCCGCT CAGCGCCTACTTCTGCCTGCCTCAGCTCCCCATCGGCCGCT < 41bp 0.747510472162402 0.507560002706786 0.076940894 0.044659734 prediction 0.479900938911231 Functional Loss - OPTC ENSG00000188770 CDS Human protein_coding chr1:203472820 chr1:203472823 nonsynonymous SNV 0.981 1 24 hm5C_associated_SNPs_69292 0 0 0 0 1 OPTC chr1:203472873 5'GT 203472873 Upstream 51bp
chr16 31499068 31499068 1 + G A PRAD 31499065 + 31499045 31499085 41 ACAATCGTCTCGGGCTGGTACTGGTGCAGCGACCAGGTGCG ACAATCGTCTCGGGCTGGTACTGATGCAGCGACCAGGTGCG < 41bp 0.739946659336201 0.488465357497366 0.30026585 0.22585252 prediction 0.479893318672403 Functional Loss - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31499065 chr16:31499068 stopgain 1.000 1 24 hm5C_associated_SNPs_69293 0 0 0 0 1 SLC5A2 chr16:31499080 5'GT 31499080 Upstream 13bp
chr11 47282960 47282960 1 + A T LUAD 47282956 + 47282936 47282976 41 AGAAGCTCGTCGCTGCCCAGCAACAGTGTAACCGGCGCTCC AGAAGCTCGTCGCTGCCCAGCAACTGTGTAACCGGCGCTCC < 41bp 0.739930297952754 0.395388242832598 0.3497051 0.23022369 prediction 0.479860595905509 Functional Loss - NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47282956 chr11:47282960 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_69295 0 0 0 0 1 NR1H3 chr11:47283000 5'GT 47283000 Upstream 41bp
chr11 71507081 71507081 1 + A T SKCM 71507077 + 71507057 71507097 41 CCGTAGACGTGCTGTATTGCCCAGAAGCCATCGTGTCGCTG CCGTAGACGTGCTGTATTGCCCAGTAGCCATCGTGTCGCTG < 41bp 0.739926213757234 0.431565790854879 0.18961999 0.12067774 prediction 0.479852427514468 Functional Loss - FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71507077 chr11:71507081 stopgain 0.069 0 25 hm5C_associated_SNPs_69297 0 0 0 0 1 FAM86C1 chr11:71507063 3'AG 71507063 Downstream 19bp
chr14 75904815 75904815 1 + G T SKCM 75904812 + 75904792 75904832 41 CTGGGCAAGAGGCCCCAGCCCGTGAAAAGTGAGGTGAGCGA CTGGGCAAGAGGCCCCAGCCCGTTAAAAGTGAGGTGAGCGA < 41bp 0.739925602745775 0.343153864757245 0.14096409 0.46498945 prediction 0.479851205491551 Functional Loss - JDP2 ENSG00000140044 CDS Human protein_coding chr14:75904812 chr14:75904815 synonymous SNV . 0 24 hm5C_associated_SNPs_69298 0 0 0 0 1 JDP2 chr14:75904824 5'GT 75904824 Upstream 10bp
chr4 113558337 113558337 1 + G C rs28364856 113558336 + 113558316 113558356 41 TAACCGAGACTATCAGGATCCGGAGACGGAAATGTCCGAAG TAACCGAGACTATCAGGATCCCGAGACGGAAATGTCCGAAG < 41bp 0.813402600268745 0.57348639919893 0.72838104 0.023080975 prediction 0.479832402139629 Functional Loss - LARP7 ENSG00000174720 UTR5 Human protein_coding chr4:113558336 chr4:113558337 . . 0 22 hm5C_associated_SNPs_69302 0 0 1 0 1 LARP7 chr4:113558395 5'GT 113558395 Upstream 59bp
chr2 162273537 162273537 1 + G A COAD 162273534 + 162273514 162273554 41 GGCTGGTGCCCGGCAAAGCACAGGTGTACCTGTGCAACAGG GGCTGGTGCCCGGCAAAGCACAGATGTACCTGTGCAACAGG < 41bp 0.764569393395546 0.524672858578247 0.9359429 0.9015493 prediction 0.479793069634599 Functional Loss - TBR1 ENSG00000136535 CDS Human protein_coding chr2:162273534 chr2:162273537 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_69303 0 0 0 0 1 TBR1 chr2:162273613 5'GT 162273613 Upstream 77bp
chr19 10132014 10132014 1 + G A LUAD 10132011 + 10131991 10132031 41 GGTTTCTATGGCTGAGTTCCCAGGCACTGACCCTGAGACCC GGTTTCTATGGCTGAGTTCCCAGACACTGACCCTGAGACCC < 41bp 0.769528298934033 0.529632432411637 0.75265896 0.37176347 prediction 0.479791733044792 Functional Loss - RDH8 ENSG00000080511 CDS Human protein_coding chr19:10132011 chr19:10132014 nonsynonymous SNV 0.887 1 24 hm5C_associated_SNPs_69304 0 0 0 0 1 RDH8 chr19:10131931 3'AG 10131931 Downstream 84bp
chr22 49103654 49103654 1 + A C SKCM 49103650 + 49103630 49103670 41 CCCGGCGGGAGGATAAAGACCACCACGGTATGTGGCCCTCG CCCGGCGGGAGGATAAAGACCACCCCGGTATGTGGCCCTCG < 41bp 0.739893202652429 0.318995506455587 0.04884869 0.054660946 prediction 0.479786405304857 Functional Loss - FAM19A5 ENSG00000219438 CDS Human protein_coding chr22:49103650 chr22:49103654 nonsynonymous SNV 0.984 3 25 hm5C_associated_SNPs_69307 0 0 0 0 1 FAM19A5 chr22:49103656 5'GT 49103656 Upstream 3bp
chr9 138557118 138557118 1 + C T UCEC 138557116 + 138557096 138557136 41 GGCCAGAACACAGTGGCCGTCTCGGAGACTGACTACAGGCT GGCCAGAACACAGTGGCCGTCTTGGAGACTGACTACAGGCT < 41bp 0.812045904905631 0.572157711860153 0.1388883 0.067584276 prediction 0.479776386090955 Functional Loss - LCN9 ENSG00000148386 CDS Human protein_coding chr9:138557116 chr9:138557118 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_69309 0 0 0 0 2 LCN9 chr9:138557091 3'AG 138557091 Downstream 28bp
chr9 138557118 138557118 1 + C T UCEC 138557116 + 138557096 138557136 41 GGCCAGAACACAGTGGCCGTCTCGGAGACTGACTACAGGCT GGCCAGAACACAGTGGCCGTCTTGGAGACTGACTACAGGCT < 41bp 0.812045904905631 0.572157711860153 0.1388883 0.067584276 prediction 0.479776386090955 Functional Loss - LCN9 ENSG00000148386 CDS Human protein_coding chr9:138557116 chr9:138557118 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_69309 0 0 0 0 2 LCN9 chr9:138557201 5'GT 138557201 Upstream 84bp
chr19 50963351 50963351 1 + C T PAAD 50963349 + 50963329 50963369 41 AAGGAGGTGTGGGGCACGAACGCGCTGGTGGAGTGGCAGGC AAGGAGGTGTGGGGCACGAACGTGCTGGTGGAGTGGCAGGC < 41bp 0.739885408572798 0.466867446215443 0.47563794 0.41257292 prediction 0.479770817145595 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50963349 chr19:50963351 nonsynonymous SNV 0.121 0 23 hm5C_associated_SNPs_69310 0 0 0 0 2 MYBPC2 chr19:50963297 3'AG 50963297 Downstream 55bp
chr19 50963351 50963351 1 + C T PAAD 50963349 + 50963329 50963369 41 AAGGAGGTGTGGGGCACGAACGCGCTGGTGGAGTGGCAGGC AAGGAGGTGTGGGGCACGAACGTGCTGGTGGAGTGGCAGGC < 41bp 0.739885408572798 0.466867446215443 0.47563794 0.41257292 prediction 0.479770817145595 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50963349 chr19:50963351 nonsynonymous SNV 0.121 0 23 hm5C_associated_SNPs_69310 0 0 0 0 2 MYBPC2 chr19:50963436 5'GT 50963436 Upstream 86bp
chr1 21889717 21889717 1 + C T COAD 21889715 + 21889695 21889735 41 AAGCGCAGCCACTGAGCGTTCCCGGTGCAACACCACCCAGG AAGCGCAGCCACTGAGCGTTCCTGGTGCAACACCACCCAGG < 41bp 0.739877347819444 0.491097669100059 0.8765062 0.88123864 prediction 0.479754695638887 Functional Loss - ALPL ENSG00000162551 CDS Human protein_coding chr1:21889715 chr1:21889717 nonsynonymous SNV 0.081 3 23 hm5C_associated_SNPs_69315 0 0 0 0 1 ALPL chr1:21889777 5'GT 21889777 Upstream 61bp
chr19 45179693 45179693 1 + G T UCEC 45179691 + 45179671 45179711 41 AACTGGAGGGGCCAGAGCCACAGGTACAGGGTCCCCAAGTG AACTGGAGGGGCCAGAGCCACATGTACAGGGTCCCCAAGTG < 41bp 0.73986441378677 0.384859228296785 0.9058234 0.3825045 prediction 0.479728827573541 Functional Loss - CEACAM19 ENSG00000186567 CDS Human protein_coding chr19:45179691 chr19:45179693 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_69318 0 0 0 0 1 CEACAM19 chr19:45179693 5'GT 45179693 Upstream 1bp
chr19 35504576 35504576 1 + G T LUSC 35504574 + 35504554 35504594 41 ACGCCCAACCTTTCCCGAGCCAGCAGCGACGCAGACCATGG ACGCCCAACCTTTCCCGAGCCATCAGCGACGCAGACCATGG < 41bp 0.739857214934364 0.388687297161964 0.41762412 0.09068933 prediction 0.479714429868728 Functional Loss - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504574 chr19:35504576 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_69320 0 0 1 0 1 GRAMD1A chr19:35504595 5'GT 35504595 Upstream 20bp
chr1 65860637 65860637 1 + G T LUAD 65860634 + 65860614 65860654 41 AACCATCAGGTCAGGATTTGCTGGGTTCTTTTCTGAACACA AACCATCAGGTCAGGATTTGCTGTGTTCTTTTCTGAACACA < 41bp 0.739857118381157 0.352628890637056 0.2575202 0.055853784 prediction 0.479714236762314 Functional Loss - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65860634 chr1:65860637 nonsynonymous SNV 0.991 5 24 hm5C_associated_SNPs_69321 0 0 0 0 2 DNAJC6 chr1:65860581 3'AG 65860581 Downstream 57bp
chr1 65860637 65860637 1 + G T LUAD 65860634 + 65860614 65860654 41 AACCATCAGGTCAGGATTTGCTGGGTTCTTTTCTGAACACA AACCATCAGGTCAGGATTTGCTGTGTTCTTTTCTGAACACA < 41bp 0.739857118381157 0.352628890637056 0.2575202 0.055853784 prediction 0.479714236762314 Functional Loss - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65860634 chr1:65860637 nonsynonymous SNV 0.991 5 24 hm5C_associated_SNPs_69321 0 0 0 0 2 DNAJC6 chr1:65860715 5'GT 65860715 Upstream 79bp
chr1 205211090 205211090 1 + C T SKCM 205211088 + 205211068 205211108 41 CAGTGCCGTCCCCGCTCTTCCTCCACCACCGACACTGCTCT CAGTGCCGTCCCCGCTCTTCCTTCACCACCGACACTGCTCT < 41bp 0.739850756655075 0.458066748722834 0.9292673 0.0518924 prediction 0.479701513310151 Functional Loss - TMCC2 ENSG00000133069 CDS Human protein_coding chr1:205211088 chr1:205211090 nonsynonymous SNV 0.936 3 23 hm5C_associated_SNPs_69323 0 0 0 0 1 TMCC2 chr1:205211172 5'GT 205211172 Upstream 83bp
chr9 116045694 116045694 1 + C T COAD 116045692 + 116045672 116045712 41 AATGAAACGCTTGGAAGAGGCCCGACTCCATAAGGAGATTC AATGAAACGCTTGGAAGAGGCCTGACTCCATAAGGAGATTC < 41bp 0.739845084202783 0.454679196791193 0.23142445 0.20755225 prediction 0.479690168405566 Functional Loss - PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116045692 chr9:116045694 stopgain 0.991 1 23 hm5C_associated_SNPs_69324 0 0 1 0 2 PRPF4 chr9:116045669 3'AG 116045669 Downstream 26bp
chr9 116045694 116045694 1 + C T COAD 116045692 + 116045672 116045712 41 AATGAAACGCTTGGAAGAGGCCCGACTCCATAAGGAGATTC AATGAAACGCTTGGAAGAGGCCTGACTCCATAAGGAGATTC < 41bp 0.739845084202783 0.454679196791193 0.23142445 0.20755225 prediction 0.479690168405566 Functional Loss - PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116045692 chr9:116045694 stopgain 0.991 1 23 hm5C_associated_SNPs_69324 0 0 1 0 2 PRPF4 chr9:116045762 5'GT 116045762 Upstream 69bp
chr21 43994940 43994940 1 + G C COAD 43994936 + 43994916 43994956 41 GCCTGATTTCAGGAGCAGCCCTGGGCCCCCTGCTGGCTGGG GCCTGATTTCAGGAGCAGCCCTGGCCCCCCTGCTGGCTGGG < 41bp 0.739837622876263 0.447271636226042 0.88354284 0.636845 prediction 0.479675245752526 Functional Loss - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43994936 chr21:43994940 nonsynonymous SNV 0.923 4 25 hm5C_associated_SNPs_69330 0 0 0 0 2 SLC37A1 chr21:43994928 3'AG 43994928 Downstream 13bp
chr21 43994940 43994940 1 + G C COAD 43994936 + 43994916 43994956 41 GCCTGATTTCAGGAGCAGCCCTGGGCCCCCTGCTGGCTGGG GCCTGATTTCAGGAGCAGCCCTGGCCCCCCTGCTGGCTGGG < 41bp 0.739837622876263 0.447271636226042 0.88354284 0.636845 prediction 0.479675245752526 Functional Loss - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43994936 chr21:43994940 nonsynonymous SNV 0.923 4 25 hm5C_associated_SNPs_69330 0 0 0 0 2 SLC37A1 chr21:43995025 5'GT 43995025 Upstream 86bp
chr20 25228991 25228991 1 + G A SKCM 25228988 + 25228968 25229008 41 TACTTCTTCGCGCTGGCGCACACGGTGCGCGACCACCTCGT TACTTCTTCGCGCTGGCGCACACAGTGCGCGACCACCTCGT < 41bp 0.748530949697076 0.508693752237118 0.16005939 0.09082559 prediction 0.479674394919917 Functional Loss - PYGB ENSG00000100994 CDS Human protein_coding chr20:25228988 chr20:25228991 synonymous SNV . 0 24 hm5C_associated_SNPs_69331 0 0 1 0 1 PYGB chr20:25229057 5'GT 25229057 Upstream 67bp
chr2 233244506 233244506 1 + G A PRAD 233244503 + 233244483 233244523 41 TGGGAGTGGTAACCACCACACGAGTGCAGCACGCCTCGCCA TGGGAGTGGTAACCACCACACGAATGCAGCACGCCTCGCCA < 41bp 0.768152179407956 0.528317122027544 0.706089 0.6078988 prediction 0.479670114760825 Functional Loss - ALPP ENSG00000163283 CDS Human protein_coding chr2:233244503 chr2:233244506 nonsynonymous SNV 0.208 5 24 hm5C_associated_SNPs_69334 0 0 0 0 1 ALPP chr2:233244474 3'AG 233244474 Downstream 33bp
chrX 10182060 10182060 1 + C T SKCM 10182058 + 10182038 10182078 41 AACGGCTTCCCCGTGGTGGTCTCCAGAGACTCCGAGCGCCT AACGGCTTCCCCGTGGTGGTCTTCAGAGACTCCGAGCGCCT < 41bp 0.739833687799095 0.439736588694329 0.95249796 0.28753597 prediction 0.479667375598189 Functional Loss - CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10182058 chrX:10182060 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_69337 0 0 0 0 1 CLCN4 chrX:10182119 5'GT 10182119 Upstream 60bp
chr6 52052535 52052535 1 + G T LUAD 52052533 + 52052513 52052553 41 TCAACCTGAACATCCATAACCGGAATACCAATACCAATCCC TCAACCTGAACATCCATAACCGTAATACCAATACCAATCCC < 41bp 0.889095292159301 0.649267103907767 0.86913466 0.2885772 prediction 0.479656376503069 Functional Loss - IL17A ENSG00000112115 CDS Human protein_coding chr6:52052533 chr6:52052535 synonymous SNV . 0 23 hm5C_associated_SNPs_69339 0 0 0 0 1 IL17A chr6:52052603 5'GT 52052603 Upstream 69bp
chr20 43355781 43355781 1 + G A BLCA 43355778 + 43355758 43355798 41 TGCCCCCTGGTGTCCCCTGCCCAGAATGGAGCACGGCCTGG TGCCCCCTGGTGTCCCCTGCCCAAAATGGAGCACGGCCTGG < 41bp 0.740664226620957 0.500844585023173 0.13939536 0.11114678 prediction 0.479639283195569 Functional Loss - WISP2 ENSG00000064205 CDS Human protein_coding chr20:43355778 chr20:43355781 nonsynonymous SNV 0.855 0 24 hm5C_associated_SNPs_69342 0 0 0 0 1 WISP2 chr20:43355728 3'AG 43355728 Downstream 54bp
chr1 9783262 9783262 1 + A T LUAD 9783258 + 9783238 9783278 41 GTACTCCGTTCAGACACCATCGCCAACATCCAACTCAACAA GTACTCCGTTCAGACACCATCGCCTACATCCAACTCAACAA < 41bp 0.739813751865869 0.383451047794232 0.047129035 0.08038461 prediction 0.479627503731738 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9783258 chr1:9783262 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_69344 0 0 0 0 2 PIK3CD chr1:9783183 3'AG 9783183 Downstream 80bp
chr1 9783262 9783262 1 + A T LUAD 9783258 + 9783238 9783278 41 GTACTCCGTTCAGACACCATCGCCAACATCCAACTCAACAA GTACTCCGTTCAGACACCATCGCCTACATCCAACTCAACAA < 41bp 0.739813751865869 0.383451047794232 0.047129035 0.08038461 prediction 0.479627503731738 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9783258 chr1:9783262 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_69344 0 0 0 0 2 PIK3CD chr1:9783350 5'GT 9783350 Upstream 89bp
chr8 38834063 38834063 1 + C T STAD 38834061 + 38834041 38834081 41 CTTGTGGAGACAGGTTACTTCACGGCAGCAGGCTTGTTCCT CTTGTGGAGACAGGTTACTTCATGGCAGCAGGCTTGTTCCT < 41bp 0.799085188985603 0.559273534712249 0.52270526 0.6276227 prediction 0.479623308546709 Functional Loss - HTRA4 ENSG00000169495 CDS Human protein_coding chr8:38834061 chr8:38834063 synonymous SNV . 0 23 hm5C_associated_SNPs_69346 0 0 0 0 1 HTRA4 chr8:38834054 3'AG 38834054 Downstream 10bp
chr16 30507589 30507589 1 + G A UCEC 30507586 + 30507566 30507606 41 TGTACATCTTCAATGGGAGGCACGGGGGGCTTAGTCCCCAG TGTACATCTTCAATGGGAGGCACAGGGGGCTTAGTCCCCAG < 41bp 0.739806770417151 0.498818159711105 0.8879636 0.8875034 prediction 0.479613540834302 Functional Loss - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30507586 chr16:30507589 nonsynonymous SNV 0.056 3 24 hm5C_associated_SNPs_69348 0 0 0 0 1 ITGAL chr16:30507615 5'GT 30507615 Upstream 27bp
chr6 4087935 4087935 1 + C T STAD 4087933 + 4087913 4087953 41 TGATGGAGACGCTTTATTCCCGCAAGAGTGAAGAGGACAAG TGATGGAGACGCTTTATTCCCGTAAGAGTGAAGAGGACAAG < 41bp 0.762004979823307 0.522199861397269 0.38451853 0.29063547 prediction 0.479610236852077 Functional Loss - C6orf201 ENSG00000185689 CDS Human protein_coding chr6:4087933 chr6:4087935 synonymous SNV . 0 23 hm5C_associated_SNPs_69349 0 0 0 0 1 C6orf201 chr6:4087960 5'GT 4087960 Upstream 26bp
chr2 231861210 231861210 1 + G A rs149976648 231861207 + 231861187 231861227 41 CCTCTTGCTGCCTTTTATCTCCAGATGCTAACGTGAAGGCA CCTCTTGCTGCCTTTTATCTCCAAATGCTAACGTGAAGGCA < 41bp 0.757266463496511 0.517479229091142 0.92702305 0.43265116 prediction 0.479574468810738 Functional Loss - SPATA3 ENSG00000173699 CDS Human protein_coding chr2:231861207 chr2:231861210 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_69355 0 0 0 0 1 SPATA3 chr2:231861249 5'GT 231861249 Upstream 40bp
chr3 183884242 183884242 1 + G T BLCA 183884239 + 183884219 183884259 41 CTGGTCCTTTCCCAGGTAAACGAGATCAACTTTGAGAACAT CTGGTCCTTTCCCAGGTAAACGATATCAACTTTGAGAACAT < 41bp 0.739786375679307 0.34245913179586 0.2830127 0.046103626 prediction 0.479572751358615 Functional Loss - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183884239 chr3:183884242 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_69356 0 0 1 0 3 DVL3 chr3:183884234 3'AG 183884234 Downstream 9bp
chr3 183884242 183884242 1 + G T BLCA 183884239 + 183884219 183884259 41 CTGGTCCTTTCCCAGGTAAACGAGATCAACTTTGAGAACAT CTGGTCCTTTCCCAGGTAAACGATATCAACTTTGAGAACAT < 41bp 0.739786375679307 0.34245913179586 0.2830127 0.046103626 prediction 0.479572751358615 Functional Loss - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183884239 chr3:183884242 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_69356 0 0 1 0 3 DVL3 chr3:183884296 5'GT 183884296 Upstream 55bp
chr3 183884242 183884242 1 + G T BLCA 183884239 + 183884219 183884259 41 CTGGTCCTTTCCCAGGTAAACGAGATCAACTTTGAGAACAT CTGGTCCTTTCCCAGGTAAACGATATCAACTTTGAGAACAT < 41bp 0.739786375679307 0.34245913179586 0.2830127 0.046103626 prediction 0.479572751358615 Functional Loss - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183884239 chr3:183884242 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_69356 0 0 1 0 3 DVL3 chr3:183884310 5'GT 183884310 Upstream 69bp
chr2 33477873 33477873 1 + G T LUAD 33477871 + 33477851 33477891 41 TGTTGTAGTGTGGGCAAGGCCTGGGGCCCACACTGTGAGAA TGTTGTAGTGTGGGCAAGGCCTTGGGCCCACACTGTGAGAA < 41bp 0.881597804987549 0.64181517059172 0.21101445 0.04186514 prediction 0.479565268791658 Functional Loss - LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33477871 chr2:33477873 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_69358 0 0 1 0 1 LTBP1 chr2:33477911 5'GT 33477911 Upstream 39bp
chr19 38692595 38692595 1 + T C UCEC 38692594 + 38692574 38692614 41 CTGTCCACAGCCACCTGAGCCTGGAGAGGGGACCCCCGACC CTGTCCACAGCCACCTGAGCCCGGAGAGGGGACCCCCGACC < 41bp 0.761078499670426 0.52129780795353 0.37916154 0.5279292 prediction 0.479561383433792 Functional Loss - SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38692594 chr19:38692595 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_69361 0 0 1 0 2 SIPA1L3 chr19:38692502 3'AG 38692502 Downstream 94bp
chr19 38692595 38692595 1 + T C UCEC 38692594 + 38692574 38692614 41 CTGTCCACAGCCACCTGAGCCTGGAGAGGGGACCCCCGACC CTGTCCACAGCCACCTGAGCCCGGAGAGGGGACCCCCGACC < 41bp 0.761078499670426 0.52129780795353 0.37916154 0.5279292 prediction 0.479561383433792 Functional Loss - SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38692594 chr19:38692595 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_69361 0 0 1 0 2 SIPA1L3 chr19:38692637 5'GT 38692637 Upstream 43bp
chr7 44152463 44152463 1 + G C ESCA 44152459 + 44152439 44152479 41 TGCCAAGCCCAGGACTACACCGGCGGCATGGGCATCGTCAA TGCCAAGCCCAGGACTACACCGGCCGCATGGGCATCGTCAA < 41bp 0.827907555885105 0.588127857014936 0.9087425 0.39037582 prediction 0.479559397740337 Functional Loss - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44152459 chr7:44152463 nonsynonymous SNV 0.990 3 25 hm5C_associated_SNPs_69362 0 0 0 0 1 AEBP1 chr7:44152508 5'GT 44152508 Upstream 46bp
chr1 8386013 8386013 1 + C T COAD 8386011 + 8385991 8386031 41 CTGATGGACTTTAGCGCCGACTCGGCGGACAACCCCAGCCA CTGATGGACTTTAGCGCCGACTTGGCGGACAACCCCAGCCA < 41bp 0.812553359799177 0.572774693286293 0.35348263 0.48260227 prediction 0.479557333025769 Functional Loss - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8386011 chr1:8386013 nonsynonymous SNV 0.627 5 23 hm5C_associated_SNPs_69363 0 0 0 0 1 SLC45A1 chr1:8386102 5'GT 8386102 Upstream 90bp
chr11 36631673 36631673 1 + G T UCEC 36631670 + 36631650 36631690 41 AGGAATGTCTGCCCATATGTCAGGATTGGAAATAATGGATG AGGAATGTCTGCCCATATGTCAGTATTGGAAATAATGGATG < 41bp 0.739777006392007 0.425503937418065 0.28941298 0.02277413 prediction 0.479554012784013 Functional Loss - C11orf74 ENSG00000166352 CDS Human protein_coding chr11:36631670 chr11:36631673 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_69364 0 0 1 1 1 C11orf74 chr11:36631631 3'AG 36631631 Downstream 43bp
chr11 66262925 66262925 1 + G A SKCM 66262922 + 66262902 66262942 41 GAAGAGTGCCGGGCTGAGAGCGTGGGTCTCTACCTCTGTCT GAAGAGTGCCGGGCTGAGAGCGTAGGTCTCTACCTCTGTCT < 41bp 0.73976235347533 0.482911360618186 0.9273554 0.81131554 prediction 0.47952470695066 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66262922 chr11:66262925 synonymous SNV . 0 24 hm5C_associated_SNPs_69369 0 0 1 0 2 DPP3 chr11:66262836 3'AG 66262836 Downstream 90bp
chr11 66262925 66262925 1 + G A SKCM 66262922 + 66262902 66262942 41 GAAGAGTGCCGGGCTGAGAGCGTGGGTCTCTACCTCTGTCT GAAGAGTGCCGGGCTGAGAGCGTAGGTCTCTACCTCTGTCT < 41bp 0.73976235347533 0.482911360618186 0.9273554 0.81131554 prediction 0.47952470695066 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66262922 chr11:66262925 synonymous SNV . 0 24 hm5C_associated_SNPs_69369 0 0 1 0 2 DPP3 chr11:66262960 5'GT 66262960 Upstream 36bp
chr6 7727753 7727753 1 + G A rs531373129 7727750 + 7727730 7727770 41 CGCTCAACCGCAAGAGCCTTCTGGCCCCCGGATCTGGCAGC CGCTCAACCGCAAGAGCCTTCTGACCCCCGGATCTGGCAGC < 41bp 0.739756337206888 0.494732948920271 0.41338167 0.4159081 prediction 0.479512674413776 Functional Loss - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7727750 chr6:7727753 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_69370 0 0 1 0 1 BMP6 chr6:7727852 5'GT 7727852 Upstream 100bp
chr10 126186628 126186628 1 + G A UCEC 126186625 + 126186605 126186645 41 TATGCCTGTGGCATCAAAGCCGAGGTGGTGGGGAAGCCTTC TATGCCTGTGGCATCAAAGCCGAAGTGGTGGGGAAGCCTTC < 41bp 0.746879102049576 0.507129212753696 0.662554 0.38715392 prediction 0.479499778591762 Functional Loss - LHPP ENSG00000107902 CDS Human protein_coding chr10:126186625 chr10:126186628 synonymous SNV . 0 24 hm5C_associated_SNPs_69371 0 0 1 0 2 LHPP chr10:126186605 3'AG 126186605 Downstream 24bp
chr10 126186628 126186628 1 + G A UCEC 126186625 + 126186605 126186645 41 TATGCCTGTGGCATCAAAGCCGAGGTGGTGGGGAAGCCTTC TATGCCTGTGGCATCAAAGCCGAAGTGGTGGGGAAGCCTTC < 41bp 0.746879102049576 0.507129212753696 0.662554 0.38715392 prediction 0.479499778591762 Functional Loss - LHPP ENSG00000107902 CDS Human protein_coding chr10:126186625 chr10:126186628 synonymous SNV . 0 24 hm5C_associated_SNPs_69371 0 0 1 0 2 LHPP chr10:126186697 5'GT 126186697 Upstream 70bp
chr16 334475 334475 1 + G A rs201837757 334472 + 334452 334492 41 GCGGCCGAGTCAATGGTGGTCACGCTGGCCAAGGTGGATGG GCGGCCGAGTCAATGGTGGTCACACTGGCCAAGGTGGATGG < 41bp 0.744968175329909 0.505224383738686 0.2676286 0.38646826 prediction 0.479487583182448 Functional Loss - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:334472 chr16:334475 synonymous SNV . 0 24 hm5C_associated_SNPs_69372 0 0 0 0 1 PDIA2 chr16:334387 3'AG 334387 Downstream 89bp
chr1 221057636 221057636 1 + G T LUAD 221057634 + 221057614 221057654 41 GGAGGCTGGCGAGAAGCCATCAGGTGGAGCCCCGGCTGCGG GGAGGCTGGCGAGAAGCCATCATGTGGAGCCCCGGCTGCGG < 41bp 0.899390308591914 0.659649102941078 0.91992617 0.77601546 prediction 0.479482411301673 Functional Loss - HLX ENSG00000136630 CDS Human protein_coding chr1:221057634 chr1:221057636 nonsynonymous SNV 0.022 1 23 hm5C_associated_SNPs_69373 0 0 0 0 1 HLX chr1:221057537 3'AG 221057537 Downstream 100bp
chr11 134229019 134229019 1 + G A LUSC 134229016 + 134228996 134229036 41 GACAACAAGGATGGGCTGAGCAAGGGGATTGTCCAGGGAGG GACAACAAGGATGGGCTGAGCAAAGGGATTGTCCAGGGAGG < 41bp 0.75990932604707 0.520170924690745 0.880004 0.4101351 prediction 0.47947680271265 Functional Loss - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134229016 chr11:134229019 synonymous SNV . 0 24 hm5C_associated_SNPs_69374 0 0 1 0 2 GLB1L2 chr11:134228954 3'AG 134228954 Downstream 66bp
chr11 134229019 134229019 1 + G A LUSC 134229016 + 134228996 134229036 41 GACAACAAGGATGGGCTGAGCAAGGGGATTGTCCAGGGAGG GACAACAAGGATGGGCTGAGCAAAGGGATTGTCCAGGGAGG < 41bp 0.75990932604707 0.520170924690745 0.880004 0.4101351 prediction 0.47947680271265 Functional Loss - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134229016 chr11:134229019 synonymous SNV . 0 24 hm5C_associated_SNPs_69374 0 0 1 0 2 GLB1L2 chr11:134229035 5'GT 134229035 Upstream 17bp
chr14 103573136 103573136 1 + C T GBM 103573134 + 103573114 103573154 41 CTCCCCAGGACCAGTCTTCTCTCCAGGTTCCCAGGAACCCA CTCCCCAGGACCAGTCTTCTCTTCAGGTTCCCAGGAACCCA < 41bp 0.815020809084141 0.575285731685879 0.9337234 0.4090501 prediction 0.479470154796523 Functional Loss - EXOC3L4 ENSG00000205436 CDS Human protein_coding chr14:103573134 chr14:103573136 nonsynonymous SNV 0.562 1 23 hm5C_associated_SNPs_69379 0 0 1 0 1 EXOC3L4 chr14:103573122 3'AG 103573122 Downstream 15bp
chr1 45480642 45480642 1 + G T STAD 45480640 + 45480620 45480660 41 TGGGGAAGACGGTGACATTGCAGGGCAACCTGGACCCCTGT TGGGGAAGACGGTGACATTGCATGGCAACCTGGACCCCTGT < 41bp 0.883168893356292 0.643434392375075 0.91211283 0.61870265 prediction 0.479469001962432 Functional Loss - UROD ENSG00000126088 CDS Human protein_coding chr1:45480640 chr1:45480642 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_69380 0 0 1 0 2 UROD chr1:45480612 3'AG 45480612 Downstream 31bp
chr1 45480642 45480642 1 + G T STAD 45480640 + 45480620 45480660 41 TGGGGAAGACGGTGACATTGCAGGGCAACCTGGACCCCTGT TGGGGAAGACGGTGACATTGCATGGCAACCTGGACCCCTGT < 41bp 0.883168893356292 0.643434392375075 0.91211283 0.61870265 prediction 0.479469001962432 Functional Loss - UROD ENSG00000126088 CDS Human protein_coding chr1:45480640 chr1:45480642 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_69380 0 0 1 0 2 UROD chr1:45480678 5'GT 45480678 Upstream 37bp
chr19 41510013 41510013 1 + G C LUSC 41510009 + 41509989 41510029 41 GGAGGCCCTTGTGGACAAGGCTGAGGCCTTCTCTGGCCGGG GGAGGCCCTTGTGGACAAGGCTGACGCCTTCTCTGGCCGGG < 41bp 0.739731901167883 0.433753533341558 0.26967412 0.084585905 prediction 0.479463802335766 Functional Loss - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41510009 chr19:41510013 nonsynonymous SNV 0.166 0 25 hm5C_associated_SNPs_69382 0 0 0 0 1 CYP2B6 chr19:41510068 5'GT 41510068 Upstream 56bp
chr9 132482984 132482984 1 + A C OV 132482983 + 132482963 132483003 41 GCCAGGAGGCCGCCATCGAGCAGCCCGTGGCTCCCCGGCCC GCCAGGAGGCCGCCATCGAGCCGCCCGTGGCTCCCCGGCCC < 41bp 0.76422783954658 0.524499467045349 0.5366995 0.38453692 prediction 0.479456745002462 Functional Loss - PRRX2 ENSG00000167157 CDS Human protein_coding chr9:132482983 chr9:132482984 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_69383 0 0 0 0 1 PRRX2 chr9:132483053 5'GT 132483053 Upstream 70bp
chr3 111785310 111785310 1 + G C LUAD 111785306 + 111785286 111785326 41 CCTCTCATCTGTGATGGCTTCAGGGACTGTGAGAATGGCCG CCTCTCATCTGTGATGGCTTCAGGCACTGTGAGAATGGCCG < 41bp 0.739727845130798 0.440231276756335 0.8576525 0.43228278 prediction 0.479455690261596 Functional Loss - TMPRSS7 ENSG00000176040 CDS Human protein_coding chr3:111785306 chr3:111785310 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_69384 0 0 0 0 2 TMPRSS7 chr3:111785239 3'AG 111785239 Downstream 72bp
chr3 111785310 111785310 1 + G C LUAD 111785306 + 111785286 111785326 41 CCTCTCATCTGTGATGGCTTCAGGGACTGTGAGAATGGCCG CCTCTCATCTGTGATGGCTTCAGGCACTGTGAGAATGGCCG < 41bp 0.739727845130798 0.440231276756335 0.8576525 0.43228278 prediction 0.479455690261596 Functional Loss - TMPRSS7 ENSG00000176040 CDS Human protein_coding chr3:111785306 chr3:111785310 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_69384 0 0 0 0 2 TMPRSS7 chr3:111785349 5'GT 111785349 Upstream 40bp
chr11 5012698 5012698 1 + G T UCEC 5012695 + 5012675 5012715 41 CCTGGAGTTGTCCATTTTGACAAGAATGAACACTGGTCAGC CCTGGAGTTGTCCATTTTGACAATAATGAACACTGGTCAGC < 41bp 0.918441528309827 0.678714944004585 0.4094142 0.080320984 prediction 0.479453168610484 Functional Loss - MMP26 ENSG00000167346 CDS Human protein_coding chr11:5012695 chr11:5012698 nonsynonymous SNV 0.046 0 24 hm5C_associated_SNPs_69385 0 0 0 0 2 MMP26 chr11:5012601 3'AG 5012601 Downstream 98bp
chr11 5012698 5012698 1 + G T UCEC 5012695 + 5012675 5012715 41 CCTGGAGTTGTCCATTTTGACAAGAATGAACACTGGTCAGC CCTGGAGTTGTCCATTTTGACAATAATGAACACTGGTCAGC < 41bp 0.918441528309827 0.678714944004585 0.4094142 0.080320984 prediction 0.479453168610484 Functional Loss - MMP26 ENSG00000167346 CDS Human protein_coding chr11:5012695 chr11:5012698 nonsynonymous SNV 0.046 0 24 hm5C_associated_SNPs_69385 0 0 0 0 2 MMP26 chr11:5012726 5'GT 5012726 Upstream 29bp
chr2 219114099 219114099 1 + G A UCEC 219114096 + 219114076 219114116 41 TCCGCCTTCAGTGCTGTTCCCTCGTCACACCAATGCCAGTG TCCGCCTTCAGTGCTGTTCCCTCATCACACCAATGCCAGTG < 41bp 0.740957713744079 0.501236974147971 0.10536742 0.11913502 prediction 0.479441479192217 Functional Loss - ARPC2 ENSG00000163466 CDS Human protein_coding chr2:219114096 chr2:219114099 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_69386 0 0 1 0 2 ARPC2 chr2:219114087 3'AG 219114087 Downstream 13bp
chr2 219114099 219114099 1 + G A UCEC 219114096 + 219114076 219114116 41 TCCGCCTTCAGTGCTGTTCCCTCGTCACACCAATGCCAGTG TCCGCCTTCAGTGCTGTTCCCTCATCACACCAATGCCAGTG < 41bp 0.740957713744079 0.501236974147971 0.10536742 0.11913502 prediction 0.479441479192217 Functional Loss - ARPC2 ENSG00000163466 CDS Human protein_coding chr2:219114096 chr2:219114099 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_69386 0 0 1 0 2 ARPC2 chr2:219114187 5'GT 219114187 Upstream 89bp
chr8 38832633 38832633 1 + G A STAD 38832630 + 38832610 38832650 41 AGGTGGCGCCATCGGTGGTTCACGTGCAGCTGTGGGGCAGG AGGTGGCGCCATCGGTGGTTCACATGCAGCTGTGGGGCAGG < 41bp 0.77180025318706 0.532085257805985 0.3146433 0.30556118 prediction 0.47942999076215 Functional Loss - HTRA4 ENSG00000169495 CDS Human protein_coding chr8:38832630 chr8:38832633 nonsynonymous SNV 0.160 2 24 hm5C_associated_SNPs_69389 0 0 0 0 2 HTRA4 chr8:38832550 3'AG 38832550 Downstream 84bp
chr8 38832633 38832633 1 + G A STAD 38832630 + 38832610 38832650 41 AGGTGGCGCCATCGGTGGTTCACGTGCAGCTGTGGGGCAGG AGGTGGCGCCATCGGTGGTTCACATGCAGCTGTGGGGCAGG < 41bp 0.77180025318706 0.532085257805985 0.3146433 0.30556118 prediction 0.47942999076215 Functional Loss - HTRA4 ENSG00000169495 CDS Human protein_coding chr8:38832630 chr8:38832633 nonsynonymous SNV 0.160 2 24 hm5C_associated_SNPs_69389 0 0 0 0 2 HTRA4 chr8:38832649 5'GT 38832649 Upstream 17bp
chr8 37996541 37996541 1 + C T ESCA 37996539 + 37996519 37996559 41 CCCTGGCTGACGTCTTGTATCACGTGGAGACAGAAGTGGAT CCCTGGCTGACGTCTTGTATCATGTGGAGACAGAAGTGGAT < 41bp 0.79474907640734 0.555042488428999 0.50109 0.62696266 prediction 0.479413175956682 Functional Loss - ASH2L ENSG00000129691 CDS Human protein_coding chr8:37996539 chr8:37996541 synonymous SNV . 0 23 hm5C_associated_SNPs_69390 0 0 1 0 1 ASH2L chr8:37996482 3'AG 37996482 Downstream 60bp
chr16 20491953 20491953 1 + G C STAD 20491952 + 20491932 20491972 41 ACTTTTGGCTCCTTGGAGACCGGGGAATCAAAGATGAAGAT ACTTTTGGCTCCTTGGAGACCCGGGAATCAAAGATGAAGAT < 41bp 0.739702870483791 0.426309008914676 0.9278703 0.93229496 prediction 0.479405740967583 Functional Loss - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20491952 chr16:20491953 nonsynonymous SNV 0.225 3 22 hm5C_associated_SNPs_69392 0 0 0 0 2 ACSM2A chr16:20491895 3'AG 20491895 Downstream 59bp
chr16 20491953 20491953 1 + G C STAD 20491952 + 20491932 20491972 41 ACTTTTGGCTCCTTGGAGACCGGGGAATCAAAGATGAAGAT ACTTTTGGCTCCTTGGAGACCCGGGAATCAAAGATGAAGAT < 41bp 0.739702870483791 0.426309008914676 0.9278703 0.93229496 prediction 0.479405740967583 Functional Loss - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20491952 chr16:20491953 nonsynonymous SNV 0.225 3 22 hm5C_associated_SNPs_69392 0 0 0 0 2 ACSM2A chr16:20492022 5'GT 20492022 Upstream 70bp
chr22 18894231 18894231 1 + G A UCEC 18894228 + 18894208 18894248 41 CAGCGCCTGCGCCTACAGAACGAGCATCGAGGTGCGCGGGG CAGCGCCTGCGCCTACAGAACGAACATCGAGGTGCGCGGGG < 41bp 0.739695832269107 0.492197422062389 0.28658956 0.11323404 prediction 0.479391664538214 Functional Loss - DGCR6 ENSG00000183628 CDS Human protein_coding chr22:18894228 chr22:18894231 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_69394 0 0 0 0 1 DGCR6 chr22:18894238 5'GT 18894238 Upstream 8bp
chr9 110081092 110081092 1 + G T GBM 110081089 + 110081069 110081109 41 TCATGTCAATGGGCTATGAACGAGAGCAAGTAATTGCAGCC TCATGTCAATGGGCTATGAACGATAGCAAGTAATTGCAGCC < 41bp 0.917916047257681 0.678225506258613 0.7832682 0.09907398 prediction 0.479381081998136 Functional Loss - RAD23B ENSG00000119318 CDS Human protein_coding chr9:110081089 chr9:110081092 stopgain 1.000 1 24 hm5C_associated_SNPs_69397 0 0 1 0 2 RAD23B chr9:110081033 3'AG 110081033 Downstream 60bp
chr9 110081092 110081092 1 + G T GBM 110081089 + 110081069 110081109 41 TCATGTCAATGGGCTATGAACGAGAGCAAGTAATTGCAGCC TCATGTCAATGGGCTATGAACGATAGCAAGTAATTGCAGCC < 41bp 0.917916047257681 0.678225506258613 0.7832682 0.09907398 prediction 0.479381081998136 Functional Loss - RAD23B ENSG00000119318 CDS Human protein_coding chr9:110081089 chr9:110081092 stopgain 1.000 1 24 hm5C_associated_SNPs_69397 0 0 1 0 2 RAD23B chr9:110081160 5'GT 110081160 Upstream 69bp
chr15 41105974 41105974 1 + C T LUSC 41105972 + 41105952 41105992 41 CATCCCTGCAGAGCAGGCTTCTCGACCCTGGACGCAACCCC CATCCCTGCAGAGCAGGCTTCTTGACCCTGGACGCAACCCC < 41bp 0.830963146371715 0.591279156339453 0.46839112 0.2819209 prediction 0.479367980064525 Functional Loss - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105972 chr15:41105974 stopgain 0.001 0 23 hm5C_associated_SNPs_69399 0 0 1 0 2 ZFYVE19 chr15:41105911 3'AG 41105911 Downstream 64bp
chr15 41105974 41105974 1 + C T LUSC 41105972 + 41105952 41105992 41 CATCCCTGCAGAGCAGGCTTCTCGACCCTGGACGCAACCCC CATCCCTGCAGAGCAGGCTTCTTGACCCTGGACGCAACCCC < 41bp 0.830963146371715 0.591279156339453 0.46839112 0.2819209 prediction 0.479367980064525 Functional Loss - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105972 chr15:41105974 stopgain 0.001 0 23 hm5C_associated_SNPs_69399 0 0 1 0 2 ZFYVE19 chr15:41106009 5'GT 41106009 Upstream 36bp
chr19 50386036 50386036 1 + C T SKCM 50386034 + 50386014 50386054 41 CCTGCAGGTGGAGCTGGGGCCTCGGCCAACCGTGGAGCGGG CCTGCAGGTGGAGCTGGGGCCTTGGCCAACCGTGGAGCGGG < 41bp 0.786694300136566 0.547013739811782 0.8887005 0.8477884 prediction 0.479361120649567 Functional Loss - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50386034 chr19:50386036 nonsynonymous SNV 0.045 4 23 hm5C_associated_SNPs_69403 0 0 1 0 1 TBC1D17 chr19:50386021 3'AG 50386021 Downstream 16bp
chr8 95993116 95993116 1 + G T rs555956218 95993113 + 95993093 95993133 41 CTCAACAACCCATGAAGTGTCTGGAGCTCCACCCTCTGCTC CTCAACAACCCATGAAGTGTCTGTAGCTCCACCCTCTGCTC < 41bp 0.739675573636652 0.404793039320621 0.5636981 0.08838269 prediction 0.479351147273305 Functional Loss - TP53INP1;NDUFAF6 ENSG00000156170 UTR5 Human protein_coding chr8:95993113 chr8:95993116 . . 0 24 hm5C_associated_SNPs_69404 0 0 1 0 2 TP53INP1;NDUFAF6 chr8:95993083 3'AG 95993083 Downstream 34bp
chr8 95993116 95993116 1 + G T rs555956218 95993113 + 95993093 95993133 41 CTCAACAACCCATGAAGTGTCTGGAGCTCCACCCTCTGCTC CTCAACAACCCATGAAGTGTCTGTAGCTCCACCCTCTGCTC < 41bp 0.739675573636652 0.404793039320621 0.5636981 0.08838269 prediction 0.479351147273305 Functional Loss - TP53INP1;NDUFAF6 ENSG00000156170 UTR5 Human protein_coding chr8:95993113 chr8:95993116 . . 0 24 hm5C_associated_SNPs_69404 0 0 1 0 2 TP53INP1;NDUFAF6 chr8:95993201 5'GT 95993201 Upstream 86bp
chr6 160523631 160523631 1 + C T UCEC 160523629 + 160523609 160523649 41 GAACGGAGCCAGGCAGTCGGCGCGGTGCTCAGCCTGCTGCT GAACGGAGCCAGGCAGTCGGCGTGGTGCTCAGCCTGCTGCT < 41bp 0.755902177036008 0.516232115149306 0.90563655 0.87835824 prediction 0.479340123773405 Functional Loss - IGF2R ENSG00000197081 CDS Human protein_coding chr6:160523629 chr6:160523631 nonsynonymous SNV 0.586 0 23 hm5C_associated_SNPs_69406 0 0 1 0 1 IGF2R chr6:160523703 5'GT 160523703 Upstream 73bp
chr2 204193298 204193298 1 + G C LUAD 204193297 + 204193277 204193317 41 GGGGGCCGCCGGGCCCTCTTCGACAGCTACACAAATCTGGA GGGGGCCGCCGGGCCCTCTTCCACAGCTACACAAATCTGGA < 41bp 0.837727392011676 0.598058001486973 0.76165617 0.5504002 prediction 0.479338781049407 Functional Loss - ABI2 ENSG00000138443 CDS Human protein_coding chr2:204193297 chr2:204193298 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_69407 0 0 1 0 1 ABI2 chr2:204193354 5'GT 204193354 Upstream 57bp
chr19 16976291 16976291 1 + G A KICH 16976288 + 16976268 16976308 41 AAGTGTGCAGAAGAAGCTATCTCGGATGGCGCCGGAAGACC AAGTGTGCAGAAGAAGCTATCTCAGATGGCGCCGGAAGACC < 41bp 0.757709239000007 0.518043683596141 0.6944169 0.10293648 prediction 0.479331110807732 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16976288 chr19:16976291 nonsynonymous SNV 0.526 3 24 hm5C_associated_SNPs_69408 0 0 1 0 1 SIN3B chr19:16976221 3'AG 16976221 Downstream 71bp
chr19 39787191 39787191 1 + C T UCEC 39787189 + 39787169 39787209 41 TGGCAGGTTCAAATCTCTGTCACCACAGGAGCTAGCGAGCT TGGCAGGTTCAAATCTCTGTCATCACAGGAGCTAGCGAGCT < 41bp 0.739664320616822 0.491242031702464 0.20829761 0.2793488 prediction 0.479328641233644 Functional Loss - IFNL1 ENSG00000182393 CDS Human protein_coding chr19:39787189 chr19:39787191 nonsynonymous SNV 0.207 4 23 hm5C_associated_SNPs_69410 0 0 0 0 1 IFNL1 chr19:39787232 5'GT 39787232 Upstream 42bp
chr12 54333305 54333305 1 - C G BLCA 54333306 - 54333286 54333326 41 TTCGACGGGGATGAGGGCGTCGTGACGCGGCTCCGGGTGCC TTCGACGGGGATGAGGGCGTCCTGACGCGGCTCCGGGTGCC < 41bp 0.860161404319416 0.620500239038917 0.7193671 0.5080951 prediction 0.479322330560998 Functional Loss - HOXC13 ENSG00000123364 CDS Human protein_coding chr12:54333306 chr12:54333305 nonsynonymous SNV 0.192 5 22 hm5C_associated_SNPs_69411 0 0 0 0 1 HOXC13 chr12:54333255 5'GT 54333255 Upstream 51bp
chr17 8167625 8167625 1 + C T SKCM 8167623 + 8167603 8167643 41 CAACCCCTGTGGACCTGGAGCTCGAATGGGTGCTGGGCAAG CAACCCCTGTGGACCTGGAGCTTGAATGGGTGCTGGGCAAG < 41bp 0.824596969822752 0.584938043017343 0.13408473 0.14326927 prediction 0.479317853610817 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8167623 chr17:8167625 synonymous SNV . 0 23 hm5C_associated_SNPs_69413 0 0 1 0 1 PFAS chr17:8167530 3'AG 8167530 Downstream 96bp
chr22 30766879 30766879 1 + G A COAD 30766876 + 30766856 30766896 41 AGCAGGGGGCACGGCGGCGACAGGCGGAGGAGGATGAGCAG AGCAGGGGGCACGGCGGCGACAGACGGAGGAGGATGAGCAG < 41bp 0.739651267770474 0.494947084974312 0.8923063 0.8659637 prediction 0.479302535540949 Functional Loss - CCDC157 ENSG00000187860 CDS Human protein_coding chr22:30766876 chr22:30766879 nonsynonymous SNV 0.012 0 24 hm5C_associated_SNPs_69416 0 0 0 0 1 CCDC157 chr22:30766939 5'GT 30766939 Upstream 61bp
chr3 46940168 46940168 1 + C T CHOL 46940166 + 46940146 46940186 41 CCGCAGGCGGCTGCACTGCACGCGCAACTACATCCACATGC CCGCAGGCGGCTGCACTGCACGTGCAACTACATCCACATGC < 41bp 0.739649520496831 0.495628954197926 0.091977656 0.10289538 prediction 0.479299040993661 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46940166 chr3:46940168 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_69418 0 0 0 0 1 PTH1R chr3:46940152 3'AG 46940152 Downstream 17bp
chr17 38430155 38430155 1 + C T SKCM 38430153 + 38430133 38430173 41 GAGCCGAGGAAAGCCCCCACCTCCACCCTCAAGGACGCCAG GAGCCGAGGAAAGCCCCCACCTTCACCCTCAAGGACGCCAG < 41bp 0.844682384109452 0.605032985786217 0.91267437 0.31661734 prediction 0.47929879664647 Functional Loss - WIPF2 ENSG00000171475 CDS Human protein_coding chr17:38430153 chr17:38430155 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_69419 0 0 1 0 1 WIPF2 chr17:38430251 5'GT 38430251 Upstream 97bp
chr16 8868783 8868783 1 + G T LUAD 8868781 + 8868761 8868801 41 CTTGGTGGACGAGGTCCAGACCGGAGGAGGCTGCACGGGCA CTTGGTGGACGAGGTCCAGACCTGAGGAGGCTGCACGGGCA < 41bp 0.901104515436372 0.661460499090252 0.91370547 0.61509895 prediction 0.47928803269224 Functional Loss - ABAT ENSG00000183044 CDS Human protein_coding chr16:8868781 chr16:8868783 stopgain 0.631 1 23 hm5C_associated_SNPs_69420 0 0 1 0 1 ABAT chr16:8868747 3'AG 8868747 Downstream 37bp
chr11 64972320 64972320 1 + G A rs374582196 64972317 + 64972297 64972337 41 GACATGGAGACTATTGGCTTCGCGGTCTACGAGGTCAGGAG GACATGGAGACTATTGGCTTCGCAGTCTACGAGGTCAGGAG < 41bp 0.73962903276752 0.497312534797739 0.7026802 0.25075835 prediction 0.47925806553504 Functional Loss - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64972317 chr11:64972320 synonymous SNV . 0 24 hm5C_associated_SNPs_69426 0 0 1 0 1 CAPN1 chr11:64972329 5'GT 64972329 Upstream 10bp
chr11 120998969 120998969 1 + A C LUAD 120998968 + 120998948 120998988 41 CAACAAGAAGAAGCCCGATGCAGGACCTGCTTGGCTGCGGG CAACAAGAAGAAGCCCGATGCCGGACCTGCTTGGCTGCGGG < 41bp 0.800462729840297 0.560838317156463 0.33867726 0.32363027 prediction 0.479248825367668 Functional Loss - TECTA ENSG00000109927 CDS Human protein_coding chr11:120998968 chr11:120998969 synonymous SNV . 0 22 hm5C_associated_SNPs_69428 0 0 0 0 1 TECTA chr11:120999053 5'GT 120999053 Upstream 85bp
chr1 171756913 171756913 1 + G T LUSC 171756910 + 171756890 171756930 41 GTGGGTGGGGACATTGGGGTCCGGACCGTTCAGCACCAAGA GTGGGTGGGGACATTGGGGTCCGTACCGTTCAGCACCAAGA < 41bp 0.739622269942237 0.339896946100207 0.31192103 0.10334039 prediction 0.479244539884474 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171756910 chr1:171756913 synonymous SNV . 0 24 hm5C_associated_SNPs_69430 0 0 1 0 1 METTL13 chr1:171756875 3'AG 171756875 Downstream 39bp
chr1 171756912 171756912 1 + G T LUSC 171756910 + 171756890 171756930 41 GTGGGTGGGGACATTGGGGTCCGGACCGTTCAGCACCAAGA GTGGGTGGGGACATTGGGGTCCTGACCGTTCAGCACCAAGA < 41bp 0.739622269942237 0.389847820371902 0.31192103 0.11558744 prediction 0.479244539884474 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171756910 chr1:171756912 nonsynonymous SNV 0.874 4 23 hm5C_associated_SNPs_69431 0 0 1 0 1 METTL13 chr1:171756875 3'AG 171756875 Downstream 38bp
chr14 24839701 24839701 1 + G T LUAD 24839698 + 24839678 24839718 41 AGAGGAGTCTGTGGCTCCTCCAGGAGGTTCCCGGAAGGAGG AGAGGAGTCTGTGGCTCCTCCAGTAGGTTCCCGGAAGGAGG < 41bp 0.893754409044835 0.654133691385191 0.90065396 0.38748664 prediction 0.479241435319288 Functional Loss - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24839698 chr14:24839701 nonsynonymous SNV 0.033 0 24 hm5C_associated_SNPs_69432 0 0 0 0 1 NFATC4 chr14:24839800 5'GT 24839800 Upstream 100bp
chr1 148932891 148932891 1 + C T CESC 148932889 + 148932869 148932909 41 GGAGACGGGTGAGGTACAGGCTCAGTCTGCGGCCAAGACTC GGAGACGGGTGAGGTACAGGCTTAGTCTGCGGCCAAGACTC < 41bp 0.739613878218824 0.490750496382937 0.123378396 0.15747458 prediction 0.479227756437647 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932889 chr1:148932891 . . 0 23 hm5C_associated_SNPs_69433 0 0 0 0 1 LOC645166 chr1:148932920 5'GT 148932920 Upstream 30bp
chr16 58550418 58550418 1 + A C UCEC 58550417 + 58550397 58550437 41 CCGGTGCCTGCTCCAGGGCACAGGCGTACCTGAGGCCGTGG CCGGTGCCTGCTCCAGGGCACCGGCGTACCTGAGGCCGTGG < 41bp 0.797265612834488 0.557654151943674 0.8978199 0.7774159 prediction 0.479222921781627 Functional Loss - SETD6 ENSG00000103037 CDS Human protein_coding chr16:58550417 chr16:58550418 synonymous SNV . 0 22 hm5C_associated_SNPs_69436 0 0 1 0 1 SETD6 chr16:58550382 3'AG 58550382 Downstream 37bp
chr20 36964028 36964028 1 + G A rs145598025 36964025 + 36964005 36964045 41 CTACAGAAAGGCTTCCCTCTCCCGACGCCGGCCAGAGTCCA CTACAGAAAGGCTTCCCTCTCCCAACGCCGGCCAGAGTCCA < 41bp 0.749857092401886 0.510245983548784 0.8387938 0.65648544 prediction 0.479222217706204 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36964025 chr20:36964028 synonymous SNV . 0 24 hm5C_associated_SNPs_69437 0 0 0 0 2 BPI chr20:36964000 3'AG 36964000 Downstream 29bp
chr20 36964028 36964028 1 + G A rs145598025 36964025 + 36964005 36964045 41 CTACAGAAAGGCTTCCCTCTCCCGACGCCGGCCAGAGTCCA CTACAGAAAGGCTTCCCTCTCCCAACGCCGGCCAGAGTCCA < 41bp 0.749857092401886 0.510245983548784 0.8387938 0.65648544 prediction 0.479222217706204 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36964025 chr20:36964028 synonymous SNV . 0 24 hm5C_associated_SNPs_69437 0 0 0 0 2 BPI chr20:36964076 5'GT 36964076 Upstream 49bp
chr8 99019445 99019445 1 + G T UCEC 99019442 + 99019422 99019462 41 TTCCTCATCAACGAGGACCTCAAGACCTGCTCCCGTGAGTC TTCCTCATCAACGAGGACCTCAATACCTGCTCCCGTGAGTC < 41bp 0.73960901158131 0.339379761719735 0.48222512 0.44609103 prediction 0.479218023162619 Functional Loss - MATN2 ENSG00000132561 CDS Human protein_coding chr8:99019442 chr8:99019445 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_69438 0 0 0 0 1 MATN2 chr8:99019455 5'GT 99019455 Upstream 11bp
chr3 183777831 183777831 1 + G T LUAD 183777829 + 183777809 183777849 41 TCTCACCCTCACCCACCTGCCTGGTGAGGGAAGCCAGCACT TCTCACCCTCACCCACCTGCCTTGTGAGGGAAGCCAGCACT < 41bp 0.739608785180763 0.394935766972454 0.43261936 0.15386462 prediction 0.479217570361526 Functional Loss - HTR3C ENSG00000178084 CDS Human protein_coding chr3:183777829 chr3:183777831 nonsynonymous SNV 0.532 3 23 hm5C_associated_SNPs_69440 0 0 0 0 1 HTR3C chr3:183777831 5'GT 183777831 Upstream 1bp
chr8 363212 363212 1 + A T STAD 363208 + 363188 363228 41 AACCGTTGTAACATCAGTCACAGCATGTAAGTTACAGCTGA AACCGTTGTAACATCAGTCACAGCTTGTAAGTTACAGCTGA < 41bp 0.739608442533453 0.419696040154872 0.32449818 0.25116837 prediction 0.479216885066905 Functional Loss - FBXO25 ENSG00000147364 CDS Human protein_coding chr8:363208 chr8:363212 nonsynonymous SNV 0.925 0 25 hm5C_associated_SNPs_69441 0 0 1 0 1 FBXO25 chr8:363213 5'GT 363213 Upstream 2bp
chr1 45101804 45101804 1 + G A COAD 45101801 + 45101781 45101821 41 GGTGTGGACAGAAGCGGATACGGGCCACCACTCTCCTGGAA GGTGTGGACAGAAGCGGATACGGACCACCACTCTCCTGGAA < 41bp 0.740883822680669 0.501276697827777 0.7528006 0.36250094 prediction 0.479214249705783 Functional Loss - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45101801 chr1:45101804 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_69442 0 0 1 0 1 RNF220 chr1:45101834 5'GT 45101834 Upstream 31bp
chr12 73056883 73056883 1 + C T UCEC 73056881 + 73056861 73056901 41 GGTAGCTGCTGCTTCTTTCTCACGAGCTGTGGAAACTGTCG GGTAGCTGCTGCTTCTTTCTCATGAGCTGTGGAAACTGTCG < 41bp 0.801745788561616 0.562138884083604 0.47161606 0.5315044 prediction 0.479213808956024 Functional Loss - TRHDE ENSG00000072657 CDS Human protein_coding chr12:73056881 chr12:73056883 stopgain 0.812 1 23 hm5C_associated_SNPs_69443 0 0 0 0 1 TRHDE chr12:73056832 3'AG 73056832 Downstream 52bp
chr19 36124047 36124047 1 + G A BLCA 36124044 + 36124024 36124064 41 TACGGCCCCCTCACCAGGCCCTCGTGGGCCCCCCTCTGCCT TACGGCCCCCTCACCAGGCCCTCATGGGCCCCCCTCTGCCT < 41bp 0.760686351301813 0.521084424748908 0.3427631 0.22044045 prediction 0.47920385310581 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124044 chr19:36124047 nonsynonymous SNV 0.854 3 24 hm5C_associated_SNPs_69446 0 0 1 0 3 RBM42 chr19:36123979 3'AG 36123979 Downstream 69bp
chr19 36124047 36124047 1 + G A BLCA 36124044 + 36124024 36124064 41 TACGGCCCCCTCACCAGGCCCTCGTGGGCCCCCCTCTGCCT TACGGCCCCCTCACCAGGCCCTCATGGGCCCCCCTCTGCCT < 41bp 0.760686351301813 0.521084424748908 0.3427631 0.22044045 prediction 0.47920385310581 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124044 chr19:36124047 nonsynonymous SNV 0.854 3 24 hm5C_associated_SNPs_69446 0 0 1 0 3 RBM42 chr19:36124000 3'AG 36124000 Downstream 48bp
chr19 36124047 36124047 1 + G A BLCA 36124044 + 36124024 36124064 41 TACGGCCCCCTCACCAGGCCCTCGTGGGCCCCCCTCTGCCT TACGGCCCCCTCACCAGGCCCTCATGGGCCCCCCTCTGCCT < 41bp 0.760686351301813 0.521084424748908 0.3427631 0.22044045 prediction 0.47920385310581 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124044 chr19:36124047 nonsynonymous SNV 0.854 3 24 hm5C_associated_SNPs_69446 0 0 1 0 3 RBM42 chr19:36124003 3'AG 36124003 Downstream 45bp
chr14 65197874 65197874 1 + C T SARC 65197872 + 65197852 65197892 41 ATGAAGAGGAGGCATGAGCACGCGGTCCGGCTCCAGGTGCT ATGAAGAGGAGGCATGAGCACGTGGTCCGGCTCCAGGTGCT < 41bp 0.784457145339143 0.544856990969123 0.72324413 0.61737806 prediction 0.47920030874004 Functional Loss - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65197872 chr14:65197874 nonsynonymous SNV 0.440 5 23 hm5C_associated_SNPs_69448 0 0 1 0 1 PLEKHG3 chr14:65197887 5'GT 65197887 Upstream 14bp
chr1 29365931 29365931 1 + C T UCEC 29365929 + 29365909 29365949 41 GTAAACGGGCGTCCCGGAGCCTCGATGGAGGTTTGTATTGA GTAAACGGGCGTCCCGGAGCCTTGATGGAGGTTTGTATTGA < 41bp 0.83919095266713 0.599591752848764 0.90575397 0.26242098 prediction 0.479198399636732 Functional Loss - EPB41 ENSG00000159023 CDS Human protein_coding chr1:29365929 chr1:29365931 synonymous SNV . 0 23 hm5C_associated_SNPs_69449 0 0 1 0 1 EPB41 chr1:29365938 5'GT 29365938 Upstream 8bp
chr1 12711268 12711268 1 + G A COAD 12711265 + 12711245 12711285 41 ACCTGCGTTTTGGGACGATACCCGTGAGGCTGTTCCAGCCG ACCTGCGTTTTGGGACGATACCCATGAGGCTGTTCCAGCCG < 41bp 0.777475753177892 0.537879232287377 0.38739192 0.18977511 prediction 0.479193041781031 Functional Loss - AADACL4 ENSG00000204518 CDS Human protein_coding chr1:12711265 chr1:12711268 nonsynonymous SNV 0.642 4 24 hm5C_associated_SNPs_69450 0 0 0 0 1 AADACL4 chr1:12711358 5'GT 12711358 Upstream 91bp
chr5 3599400 3599400 1 + C T COAD 3599398 + 3599378 3599418 41 CCCGCCACCTTCGCAGCCCACACGGCGCCGGCTTATTACCC CCCGCCACCTTCGCAGCCCACATGGCGCCGGCTTATTACCC < 41bp 0.739593667491622 0.482441671062607 0.44381103 0.86815035 prediction 0.479187334983244 Functional Loss - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3599398 chr5:3599400 nonsynonymous SNV 0.554 3 23 hm5C_associated_SNPs_69452 0 0 0 0 1 IRX1 chr5:3599339 3'AG 3599339 Downstream 62bp
chr10 96353272 96353272 1 + C T COAD 96353270 + 96353250 96353290 41 TTTTAGATGCACAGCTTCAACACGGATCCAGAGGTGTTTAT TTTTAGATGCACAGCTTCAACATGGATCCAGAGGTGTTTAT < 41bp 0.805248016678216 0.565668561144644 0.41297445 0.35392272 prediction 0.479158911067144 Functional Loss - HELLS ENSG00000119969 CDS Human protein_coding chr10:96353270 chr10:96353272 nonsynonymous SNV 0.875 1 23 hm5C_associated_SNPs_69453 0 0 1 1 2 HELLS chr10:96353256 3'AG 96353256 Downstream 17bp
chr10 96353272 96353272 1 + C T COAD 96353270 + 96353250 96353290 41 TTTTAGATGCACAGCTTCAACACGGATCCAGAGGTGTTTAT TTTTAGATGCACAGCTTCAACATGGATCCAGAGGTGTTTAT < 41bp 0.805248016678216 0.565668561144644 0.41297445 0.35392272 prediction 0.479158911067144 Functional Loss - HELLS ENSG00000119969 CDS Human protein_coding chr10:96353270 chr10:96353272 nonsynonymous SNV 0.875 1 23 hm5C_associated_SNPs_69453 0 0 1 1 2 HELLS chr10:96353284 5'GT 96353284 Upstream 13bp
chr12 57883081 57883081 1 + G A HNSC 57883078 + 57883058 57883098 41 TTTTGTTATCTGGCTGGGAGCAAGATGACCTCACTAACCAG TTTTGTTATCTGGCTGGGAGCAAAATGACCTCACTAACCAG < 41bp 0.745870077713035 0.506297797982594 0.7422816 0.40246683 prediction 0.479144559460881 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57883078 chr12:57883081 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_69455 0 0 1 0 2 MARS chr12:57883050 3'AG 57883050 Downstream 32bp
chr12 57883081 57883081 1 + G A HNSC 57883078 + 57883058 57883098 41 TTTTGTTATCTGGCTGGGAGCAAGATGACCTCACTAACCAG TTTTGTTATCTGGCTGGGAGCAAAATGACCTCACTAACCAG < 41bp 0.745870077713035 0.506297797982594 0.7422816 0.40246683 prediction 0.479144559460881 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57883078 chr12:57883081 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_69455 0 0 1 0 2 MARS chr12:57883128 5'GT 57883128 Upstream 48bp
chr4 1343559 1343559 1 + G T LUAD 1343556 + 1343536 1343576 41 GGCTGAGGCAGGCGACCACCCGGGCCGTGGAAGGGTGGAAT GGCTGAGGCAGGCGACCACCCGGTCCGTGGAAGGGTGGAAT < 41bp 0.739569028135302 0.331988190615427 0.87952924 0.6939647 prediction 0.479138056270604 Functional Loss - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1343556 chr4:1343559 nonsynonymous SNV 0.004 1 24 hm5C_associated_SNPs_69457 0 0 0 0 1 UVSSA chr4:1343642 5'GT 1343642 Upstream 84bp
chr16 58288028 58288028 1 + A T LUSC 58288024 + 58288004 58288044 41 ATGAAGGATGACTTACGACACACAAGGGCAAATGCGGAACG ATGAAGGATGACTTACGACACACATGGGCAAATGCGGAACG < 41bp 0.739563577194765 0.403984654908674 0.06814313 0.02934599 prediction 0.479127154389531 Functional Loss - CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58288024 chr16:58288028 nonsynonymous SNV 0.262 4 25 hm5C_associated_SNPs_69460 0 0 0 0 1 CCDC113 chr16:58288063 5'GT 58288063 Upstream 36bp
chr17 80013096 80013096 1 + C T COAD 80013094 + 80013074 80013114 41 CTCACCAAGCTCAAGTGTGCCGCAGGTGAGGGCCTGGGTCA CTCACCAAGCTCAAGTGTGCCGTAGGTGAGGGCCTGGGTCA < 41bp 0.765058540608911 0.525497907832166 0.7343581 0.66850567 prediction 0.47912126555349 Functional Loss - GPS1 ENSG00000169727 CDS Human protein_coding chr17:80013094 chr17:80013096 nonsynonymous SNV 0.601 4 23 hm5C_associated_SNPs_69461 0 0 1 0 3 GPS1 chr17:80013038 3'AG 80013038 Downstream 59bp
chr17 80013096 80013096 1 + C T COAD 80013094 + 80013074 80013114 41 CTCACCAAGCTCAAGTGTGCCGCAGGTGAGGGCCTGGGTCA CTCACCAAGCTCAAGTGTGCCGTAGGTGAGGGCCTGGGTCA < 41bp 0.765058540608911 0.525497907832166 0.7343581 0.66850567 prediction 0.47912126555349 Functional Loss - GPS1 ENSG00000169727 CDS Human protein_coding chr17:80013094 chr17:80013096 nonsynonymous SNV 0.601 4 23 hm5C_associated_SNPs_69461 0 0 1 0 3 GPS1 chr17:80013041 3'AG 80013041 Downstream 56bp
chr17 80013096 80013096 1 + C T COAD 80013094 + 80013074 80013114 41 CTCACCAAGCTCAAGTGTGCCGCAGGTGAGGGCCTGGGTCA CTCACCAAGCTCAAGTGTGCCGTAGGTGAGGGCCTGGGTCA < 41bp 0.765058540608911 0.525497907832166 0.7343581 0.66850567 prediction 0.47912126555349 Functional Loss - GPS1 ENSG00000169727 CDS Human protein_coding chr17:80013094 chr17:80013096 nonsynonymous SNV 0.601 4 23 hm5C_associated_SNPs_69461 0 0 1 0 3 GPS1 chr17:80013098 5'GT 80013098 Upstream 3bp
chr8 22168683 22168683 1 + A T BLCA 22168679 + 22168659 22168699 41 AGAGAGCAATGGACCAGGCTCGAGAACTGGTCAACATGTTG AGAGAGCAATGGACCAGGCTCGAGTACTGGTCAACATGTTG < 41bp 0.739555499359923 0.405622370431503 0.1970883 0.148379 prediction 0.479110998719846 Functional Loss - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22168679 chr8:22168683 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_69463 0 0 0 0 1 PIWIL2 chr8:22168625 3'AG 22168625 Downstream 59bp
chr16 1710001 1710001 1 + C T STAD 1709999 + 1709979 1710019 41 CTCTCGCAGCCCCCGCTGCCCTCGGAACCAGGCCTCCCTCC CTCTCGCAGCCCCCGCTGCCCTTGGAACCAGGCCTCCCTCC < 41bp 0.804943638400223 0.56539352970193 0.38527846 0.16090024 prediction 0.479100217396585 Functional Loss - CRAMP1 ENSG00000007545 CDS Human protein_coding chr16:1709999 chr16:1710001 nonsynonymous SNV 0.589 4 23 hm5C_associated_SNPs_69466 0 0 0 0 1 CRAMP1 chr16:1710064 5'GT 1710064 Upstream 64bp
chr3 69134355 69134355 1 + A C COAD 69134354 + 69134334 69134374 41 AACTACCTGGTGGTGGCTGCCATGATGATTTCCATTGTGGG AACTACCTGGTGGTGGCTGCCCTGATGATTTCCATTGTGGG < 41bp 0.765656413183898 0.526107446072668 0.1198833 0.03608361 prediction 0.479097934222461 Functional Loss - ARL6IP5 ENSG00000144746 CDS Human protein_coding chr3:69134354 chr3:69134355 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_69469 0 0 1 0 1 ARL6IP5 chr3:69134374 5'GT 69134374 Upstream 20bp
chr11 64981857 64981857 1 + G T LUAD 64981855 + 64981835 64981875 41 GGCGCAGTCCGTCTACATGGCCGGGGTGCTGGTGGGGGCTG GGCGCAGTCCGTCTACATGGCCTGGGTGCTGGTGGGGGCTG < 41bp 0.739543623008245 0.431607545596565 0.9085524 0.25610197 prediction 0.47908724601649 Functional Loss - SLC22A20 ENSG00000197847 ncRNA_exonic Human transcribed_unitary_pseudogene chr11:64981855 chr11:64981857 . . 0 23 hm5C_associated_SNPs_69472 0 0 0 0 2 SLC22A20 chr11:64981797 3'AG 64981797 Downstream 61bp
chr11 64981857 64981857 1 + G T LUAD 64981855 + 64981835 64981875 41 GGCGCAGTCCGTCTACATGGCCGGGGTGCTGGTGGGGGCTG GGCGCAGTCCGTCTACATGGCCTGGGTGCTGGTGGGGGCTG < 41bp 0.739543623008245 0.431607545596565 0.9085524 0.25610197 prediction 0.47908724601649 Functional Loss - SLC22A20 ENSG00000197847 ncRNA_exonic Human transcribed_unitary_pseudogene chr11:64981855 chr11:64981857 . . 0 23 hm5C_associated_SNPs_69472 0 0 0 0 2 SLC22A20 chr11:64981900 5'GT 64981900 Upstream 44bp
chr11 55036761 55036761 1 + G A SKCM 55036758 + 55036738 55036778 41 ACATGCCCCAGCCTCTGAATCTAGCGCTCAGGGCAGGGCCC ACATGCCCCAGCCTCTGAATCTAACGCTCAGGGCAGGGCCC < 41bp 0.773041108907801 0.533499717064689 0.13598147 0.059020102 prediction 0.479082783686223 Functional Loss - TRIM48 ENSG00000150244 CDS Human protein_coding chr11:55036758 chr11:55036761 nonsynonymous SNV 0.041 0 24 hm5C_associated_SNPs_69474 0 0 0 0 2 TRIM48 chr11:55036718 3'AG 55036718 Downstream 44bp
chr11 55036761 55036761 1 + G A SKCM 55036758 + 55036738 55036778 41 ACATGCCCCAGCCTCTGAATCTAGCGCTCAGGGCAGGGCCC ACATGCCCCAGCCTCTGAATCTAACGCTCAGGGCAGGGCCC < 41bp 0.773041108907801 0.533499717064689 0.13598147 0.059020102 prediction 0.479082783686223 Functional Loss - TRIM48 ENSG00000150244 CDS Human protein_coding chr11:55036758 chr11:55036761 nonsynonymous SNV 0.041 0 24 hm5C_associated_SNPs_69474 0 0 0 0 2 TRIM48 chr11:55036815 5'GT 55036815 Upstream 55bp
chr19 45452429 45452429 1 + A C rs5126 45452428 + 45452408 45452448 41 CTCCCCAGGGACTTGTACAGCAAAAGCACAGCAGCCATGAG CTCCCCAGGGACTTGTACAGCCAAAGCACAGCAGCCATGAG < 41bp 0.73952999352334 0.481242590517937 0.21644565 0.15529072 prediction 0.479059987046681 Functional Loss - APOC2 ENSG00000224916;ENSG00000234906 CDS Human other chr19:45452428 chr19:45452429 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_69478 1 0 1 0 1 APOC2 chr19:45452416 3'AG 45452416 Downstream 14bp
chr3 13671366 13671366 1 + G A LUSC 13671363 + 13671343 13671383 41 CCAGGCCGCCTGTGCCAGCACACGTGTGAGAACACACTCGG CCAGGCCGCCTGTGCCAGCACACATGTGAGAACACACTCGG < 41bp 0.752190925713751 0.512668829997028 0.53663784 0.24626568 prediction 0.479044191433447 Functional Loss - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13671363 chr3:13671366 synonymous SNV . 0 24 hm5C_associated_SNPs_69481 0 0 0 0 2 FBLN2 chr3:13671320 3'AG 13671320 Downstream 47bp
chr3 13671366 13671366 1 + G A LUSC 13671363 + 13671343 13671383 41 CCAGGCCGCCTGTGCCAGCACACGTGTGAGAACACACTCGG CCAGGCCGCCTGTGCCAGCACACATGTGAGAACACACTCGG < 41bp 0.752190925713751 0.512668829997028 0.53663784 0.24626568 prediction 0.479044191433447 Functional Loss - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13671363 chr3:13671366 synonymous SNV . 0 24 hm5C_associated_SNPs_69481 0 0 0 0 2 FBLN2 chr3:13671445 5'GT 13671445 Upstream 80bp
chr1 22903296 22903296 1 + C T GBM 22903294 + 22903274 22903314 41 ACACCCAAGATGTACTGCAGCGCGGAGGGCGAGTGGCTCGT ACACCCAAGATGTACTGCAGCGTGGAGGGCGAGTGGCTCGT < 41bp 0.773579489132939 0.534061221734607 0.2651288 0.36259145 prediction 0.479036534796663 Functional Loss - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22903294 chr1:22903296 nonsynonymous SNV 0.981 3 23 hm5C_associated_SNPs_69483 0 0 1 0 1 EPHA8 chr1:22903373 5'GT 22903373 Upstream 78bp
chr4 37848880 37848880 1 + G T LUSC 37848877 + 37848857 37848897 41 GAGCCAAACAGCTAATAGACCAGGGGAAAACTGTTTTATTT GAGCCAAACAGCTAATAGACCAGTGGAAAACTGTTTTATTT < 41bp 0.739517512716165 0.366883565886936 0.928244 0.9012754 prediction 0.479035025432331 Functional Loss - PGM2 ENSG00000169299 CDS Human protein_coding chr4:37848877 chr4:37848880 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_69485 0 0 1 0 2 PGM2 chr4:37848823 3'AG 37848823 Downstream 58bp
chr4 37848880 37848880 1 + G T LUSC 37848877 + 37848857 37848897 41 GAGCCAAACAGCTAATAGACCAGGGGAAAACTGTTTTATTT GAGCCAAACAGCTAATAGACCAGTGGAAAACTGTTTTATTT < 41bp 0.739517512716165 0.366883565886936 0.928244 0.9012754 prediction 0.479035025432331 Functional Loss - PGM2 ENSG00000169299 CDS Human protein_coding chr4:37848877 chr4:37848880 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_69485 0 0 1 0 2 PGM2 chr4:37848916 5'GT 37848916 Upstream 37bp
chr17 45009511 45009511 1 + G C HNSC 45009507 + 45009487 45009527 41 CTTCCAGCATCGGCGCCATGCAAGGGAGCAGCAGGAGAGAC CTTCCAGCATCGGCGCCATGCAAGCGAGCAGCAGGAGAGAC < 41bp 0.837869407301547 0.598354866363443 0.4325916 0.21686587 prediction 0.479029081876206 Functional Loss - GOSR2 ENSG00000108433;ENSG00000262633 CDS Human other chr17:45009507 chr17:45009511 nonsynonymous SNV 0.113 3 25 hm5C_associated_SNPs_69487 0 0 1 0 2 GOSR2 chr17:45009433 3'AG 45009433 Downstream 79bp
chr17 45009511 45009511 1 + G C HNSC 45009507 + 45009487 45009527 41 CTTCCAGCATCGGCGCCATGCAAGGGAGCAGCAGGAGAGAC CTTCCAGCATCGGCGCCATGCAAGCGAGCAGCAGGAGAGAC < 41bp 0.837869407301547 0.598354866363443 0.4325916 0.21686587 prediction 0.479029081876206 Functional Loss - GOSR2 ENSG00000108433;ENSG00000262633 CDS Human other chr17:45009507 chr17:45009511 nonsynonymous SNV 0.113 3 25 hm5C_associated_SNPs_69487 0 0 1 0 2 GOSR2 chr17:45009565 5'GT 45009565 Upstream 55bp
chr3 46449584 46449584 1 + C T UCEC 46449582 + 46449562 46449602 41 AGTCTGAAGATGGCCAATTACACGCTGGCACCAGAGGATGA AGTCTGAAGATGGCCAATTACATGCTGGCACCAGAGGATGA < 41bp 0.770357324778303 0.53084407918606 0.09752026 0.16403511 prediction 0.479026491184485 Functional Loss - CCRL2 ENSG00000121797 CDS Human protein_coding chr3:46449582 chr3:46449584 nonsynonymous SNV 0.015 3 23 hm5C_associated_SNPs_69488 0 0 0 0 1 CCRL2 chr3:46449559 3'AG 46449559 Downstream 26bp
chr7 36324387 36324387 1 + C T CESC 36324385 + 36324365 36324405 41 AGAGCTCGCCAAGCAACGGGCACGGGAAGCTGGCGGGCCCC AGAGCTCGCCAAGCAACGGGCATGGGAAGCTGGCGGGCCCC < 41bp 0.772375507368485 0.532864783300977 0.6049683 0.582288 prediction 0.479021448135016 Functional Loss - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36324385 chr7:36324387 synonymous SNV . 0 23 hm5C_associated_SNPs_69489 0 0 1 0 2 EEPD1 chr7:36324295 3'AG 36324295 Downstream 93bp
chr7 36324387 36324387 1 + C T CESC 36324385 + 36324365 36324405 41 AGAGCTCGCCAAGCAACGGGCACGGGAAGCTGGCGGGCCCC AGAGCTCGCCAAGCAACGGGCATGGGAAGCTGGCGGGCCCC < 41bp 0.772375507368485 0.532864783300977 0.6049683 0.582288 prediction 0.479021448135016 Functional Loss - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36324385 chr7:36324387 synonymous SNV . 0 23 hm5C_associated_SNPs_69489 0 0 1 0 2 EEPD1 chr7:36324429 5'GT 36324429 Upstream 43bp
chr7 142562309 142562309 1 + G T SKCM 142562307 + 142562287 142562327 41 AGAGACGCAGGCCAGTGGGGCTGGGGGGGCCTCCCTGGTGG AGAGACGCAGGCCAGTGGGGCTTGGGGGGCCTCCCTGGTGG < 41bp 0.898492461911829 0.658984568074043 0.88225865 0.7906697 prediction 0.479015787675573 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142562307 chr7:142562309 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_69491 0 0 1 0 1 EPHB6 chr7:142562289 3'AG 142562289 Downstream 21bp
chr19 18961640 18961640 1 + C T UCEC 18961638 + 18961618 18961658 41 CAGCTGCGGGCACGCCAGATCACGGCACAGCAGATCAACAA CAGCTGCGGGCACGCCAGATCATGGCACAGCAGATCAACAA < 41bp 0.739506727210219 0.476430514632211 0.82894874 0.84139335 prediction 0.479013454420438 Functional Loss - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18961638 chr19:18961640 nonsynonymous SNV 0.868 4 23 hm5C_associated_SNPs_69492 0 0 1 0 1 UPF1 chr19:18961677 5'GT 18961677 Upstream 38bp
chr1 42922672 42922672 1 + G A UCEC 42922669 + 42922649 42922689 41 CTGCGGCTGCAGGCACCTTCCTGGCAGTAGAGTTCACCACT CTGCGGCTGCAGGCACCTTCCTGACAGTAGAGTTCACCACT < 41bp 0.743118762090357 0.503613264380923 0.30041432 0.16730788 prediction 0.479010995418869 Functional Loss - PPCS ENSG00000127125 CDS Human protein_coding chr1:42922669 chr1:42922672 nonsynonymous SNV 0.841 1 24 hm5C_associated_SNPs_69493 0 0 0 0 1 PPCS chr1:42922744 5'GT 42922744 Upstream 73bp
chr11 124743681 124743681 1 + G T UCEC 124743678 + 124743658 124743698 41 CCAGTGGTCACTGAGATCACCAAGAACAGCATTACCCTGAC CCAGTGGTCACTGAGATCACCAATAACAGCATTACCCTGAC < 41bp 0.739501804347541 0.338414310398323 0.32077736 0.028595775 prediction 0.479003608695083 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124743678 chr11:124743681 nonsynonymous SNV 0.973 0 24 hm5C_associated_SNPs_69495 0 0 0 0 2 ROBO3 chr11:124743593 3'AG 124743593 Downstream 89bp
chr11 124743681 124743681 1 + G T UCEC 124743678 + 124743658 124743698 41 CCAGTGGTCACTGAGATCACCAAGAACAGCATTACCCTGAC CCAGTGGTCACTGAGATCACCAATAACAGCATTACCCTGAC < 41bp 0.739501804347541 0.338414310398323 0.32077736 0.028595775 prediction 0.479003608695083 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124743678 chr11:124743681 nonsynonymous SNV 0.973 0 24 hm5C_associated_SNPs_69495 0 0 0 0 2 ROBO3 chr11:124743758 5'GT 124743758 Upstream 78bp
chr3 134880997 134880997 1 + G A UCS 134880994 + 134880974 134881014 41 GGCTACGGCAAGTTCAGTGGCAAGATGTGCTTCCAGACTCT GGCTACGGCAAGTTCAGTGGCAAAATGTGCTTCCAGACTCT < 41bp 0.742757113428644 0.503257676313361 0.5827523 0.87291217 prediction 0.478998874230565 Functional Loss - EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134880994 chr3:134880997 synonymous SNV . 0 24 hm5C_associated_SNPs_69496 0 0 0 0 1 EPHB1 chr3:134881022 5'GT 134881022 Upstream 26bp
chrX 109698484 109698484 1 + G T LGG 109698481 + 109698461 109698501 41 TGAAAGAGCATGGAGACCCCCAAGAAGGTCTTCATGATCAC TGAAAGAGCATGGAGACCCCCAATAAGGTCTTCATGATCAC < 41bp 0.739496006523166 0.356416975282343 0.03960544 0.0056364834 prediction 0.478992013046333 Functional Loss - RTL9 ENSG00000243978 CDS Human protein_coding chrX:109698481 chrX:109698484 stopgain 0.980 1 24 hm5C_associated_SNPs_69498 0 0 0 0 1 RTL9 chrX:109698430 3'AG 109698430 Downstream 55bp
chr7 96639162 96639162 1 + G T LUSC 96639159 + 96639139 96639179 41 AGTTTAAGAAACTGCTGAAGCAGGGCAGTAATCCTCATGAG AGTTTAAGAAACTGCTGAAGCAGTGCAGTAATCCTCATGAG < 41bp 0.920301836493454 0.680806557174717 0.9298967 0.24535003 prediction 0.478990558637475 Functional Loss - DLX6 ENSG00000006377 CDS Human protein_coding chr7:96639159 chr7:96639162 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_69499 0 0 0 0 1 DLX6 chr7:96639108 3'AG 96639108 Downstream 55bp
chr16 28995161 28995161 1 + G A UCEC 28995158 + 28995138 28995178 41 CCTCCTTCTTGTCCGAGTTCCGGGCTCTGCAGTTCTCGCTC CCTCCTTCTTGTCCGAGTTCCGGACTCTGCAGTTCTCGCTC < 41bp 0.76601394194962 0.526519969476693 0.93599856 0.87356716 prediction 0.478987944945854 Functional Loss - SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28995158 chr16:28995161 nonsynonymous SNV 0.983 1 24 hm5C_associated_SNPs_69501 0 0 1 0 1 SPNS1 chr16:28995107 3'AG 28995107 Downstream 55bp
chr22 38074546 38074546 1 + G A UCEC 38074543 + 38074523 38074563 41 CCTGTGCCTGCACTTCAACCCTCGCTTCAACGCCCACGGCG CCTGTGCCTGCACTTCAACCCTCACTTCAACGCCCACGGCG < 41bp 0.770807415232431 0.531322307443277 0.4119797 0.07761666 prediction 0.478970215578309 Functional Loss - LGALS1 ENSG00000100097 CDS Human protein_coding chr22:38074543 chr22:38074546 nonsynonymous SNV 0.970 3 24 hm5C_associated_SNPs_69504 0 0 0 0 1 LGALS1 chr22:38074490 3'AG 38074490 Downstream 57bp
chr1 18149806 18149806 1 + G A SKCM 18149803 + 18149783 18149823 41 GAGGTCCCCCCTGTGATCATCACGGAGACACCCTTGAGGGA GAGGTCCCCCCTGTGATCATCACAGAGACACCCTTGAGGGA < 41bp 0.766345982173196 0.526865457057396 0.8835853 0.40787762 prediction 0.478961050231602 Functional Loss - ACTL8 ENSG00000117148 CDS Human protein_coding chr1:18149803 chr1:18149806 synonymous SNV . 0 24 hm5C_associated_SNPs_69505 0 0 0 0 1 ACTL8 chr1:18149851 5'GT 18149851 Upstream 46bp
chr5 163619 163619 1 + G A rs114939243 163616 + 163596 163636 41 AGCCGGAGTCTGTCCTCCCCCTCGGGGCTCCACCCTGCTGA AGCCGGAGTCTGTCCTCCCCCTCAGGGCTCCACCCTGCTGA < 41bp 0.776080761760979 0.536607666784024 0.1371789 0.025324047 prediction 0.478946189953909 Functional Loss - PLEKHG4B ENSG00000153404 CDS Human protein_coding chr5:163616 chr5:163619 synonymous SNV . 0 24 hm5C_associated_SNPs_69508 0 0 0 0 1 PLEKHG4B chr5:163663 5'GT 163663 Upstream 45bp
chr2 192194745 192194745 1 + A C SKCM 192194744 + 192194724 192194764 41 CATTACTGGGGAAAGTGGAGCAGGAAAAACAGGTAAGGCTC CATTACTGGGGAAAGTGGAGCCGGAAAAACAGGTAAGGCTC < 41bp 0.739471872227315 0.476539866528452 0.9158665 0.90887856 prediction 0.47894374445463 Functional Loss - MYO1B ENSG00000128641 CDS Human protein_coding chr2:192194744 chr2:192194745 synonymous SNV . 0 22 hm5C_associated_SNPs_69509 0 0 1 0 2 MYO1B chr2:192194661 3'AG 192194661 Downstream 85bp
chr2 192194745 192194745 1 + A C SKCM 192194744 + 192194724 192194764 41 CATTACTGGGGAAAGTGGAGCAGGAAAAACAGGTAAGGCTC CATTACTGGGGAAAGTGGAGCCGGAAAAACAGGTAAGGCTC < 41bp 0.739471872227315 0.476539866528452 0.9158665 0.90887856 prediction 0.47894374445463 Functional Loss - MYO1B ENSG00000128641 CDS Human protein_coding chr2:192194744 chr2:192194745 synonymous SNV . 0 22 hm5C_associated_SNPs_69509 0 0 1 0 2 MYO1B chr2:192194755 5'GT 192194755 Upstream 11bp
chr2 11780484 11780484 1 + C T UCEC 11780482 + 11780462 11780502 41 AGACGGTCGTCCGCCTGGAGCTCGAGGACGAGTGGCAGTTC AGACGGTCGTCCGCCTGGAGCTTGAGGACGAGTGGCAGTTC < 41bp 0.739471606281125 0.4783157723857 0.19512844 0.2689468 prediction 0.47894321256225 Functional Loss - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11780482 chr2:11780484 synonymous SNV . 0 23 hm5C_associated_SNPs_69510 0 0 0 0 1 GREB1 chr2:11780417 3'AG 11780417 Downstream 68bp
chrX 150891127 150891127 1 + G A UCEC 150891124 + 150891104 150891144 41 ATGCAGTCAACCGGCGTCTGCGCGCCCTGGAGGAACAGGGC ATGCAGTCAACCGGCGTCTGCGCACCCTGGAGGAACAGGGC < 41bp 0.751498497053606 0.512028286740025 0.4584586 0.30409437 prediction 0.478940420627162 Functional Loss - FATE1 ENSG00000147378 CDS Human protein_coding chrX:150891124 chrX:150891127 nonsynonymous SNV 0.150 0 24 hm5C_associated_SNPs_69511 0 0 0 0 1 FATE1 chrX:150891100 3'AG 150891100 Downstream 28bp
chr11 12530148 12530148 1 + C T SKCM 12530146 + 12530126 12530166 41 TTCAGAAACGAGAAGGAATCCTCCAGTCTCGGCAAATCCAA TTCAGAAACGAGAAGGAATCCTTCAGTCTCGGCAAATCCAA < 41bp 0.739465918074205 0.429723826069508 0.9200511 0.14837837 prediction 0.47893183614841 Functional Loss - PARVA ENSG00000197702 CDS Human protein_coding chr11:12530146 chr11:12530148 synonymous SNV . 0 23 hm5C_associated_SNPs_69513 0 0 1 0 1 PARVA chr11:12530131 3'AG 12530131 Downstream 18bp
chr2 27151139 27151139 1 + T C GBM 27151138 + 27151118 27151158 41 TCCAGGGTGCTAAGGAGGCACTGGATTTGGGGATCACAGGC TCCAGGGTGCTAAGGAGGCACCGGATTTGGGGATCACAGGC < 41bp 0.756323189775859 0.516865808133587 0.46581203 0.38022313 prediction 0.478914763284545 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27151138 chr2:27151139 nonsynonymous SNV 0.951 4 22 hm5C_associated_SNPs_69517 0 0 1 0 1 DPYSL5 chr2:27151191 5'GT 27151191 Upstream 53bp
chr20 25261606 25261606 1 + G A rs141916716 25261603 + 25261583 25261623 41 AGCACGTGGCCGCGCTGTTTCCCGGCGATGTGGACCGCCTG AGCACGTGGCCGCGCTGTTTCCCAGCGATGTGGACCGCCTG < 41bp 0.7754387155398 0.535981495904906 0.91436386 0.5524051 prediction 0.478914439269787 Functional Loss - PYGB ENSG00000100994 CDS Human protein_coding chr20:25261603 chr20:25261606 nonsynonymous SNV 0.491 2 24 hm5C_associated_SNPs_69518 0 0 1 0 1 PYGB chr20:25261585 3'AG 25261585 Downstream 22bp
chrX 19373844 19373844 1 + G A BRCA 19373841 + 19373821 19373861 41 CCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCTATT CCTGTGCGTCCGAGAGGCAACAAAGTTTGCTGCTGCCTATT < 41bp 0.739456407549602 0.494201393898485 0.67400837 0.20733568 prediction 0.478912815099203 Functional Loss - PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19373841 chrX:19373844 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_69519 0 0 1 0 2 PDHA1 chrX:19373804 3'AG 19373804 Downstream 41bp
chrX 19373844 19373844 1 + G A BRCA 19373841 + 19373821 19373861 41 CCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCTATT CCTGTGCGTCCGAGAGGCAACAAAGTTTGCTGCTGCCTATT < 41bp 0.739456407549602 0.494201393898485 0.67400837 0.20733568 prediction 0.478912815099203 Functional Loss - PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19373841 chrX:19373844 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_69519 0 0 1 0 2 PDHA1 chrX:19373875 5'GT 19373875 Upstream 32bp
chr15 57816816 57816816 1 + T C UCEC 57816815 + 57816795 57816835 41 AGGCCTCCCGTACCTCAACCCTGGAGCTCCAGAACCAGCTG AGGCCTCCCGTACCTCAACCCCGGAGCTCCAGAACCAGCTG < 41bp 0.796529049139196 0.557091125735856 0.023017883 0.1230894 prediction 0.47887584680668 Functional Loss - CGNL1 ENSG00000128849 CDS Human protein_coding chr15:57816815 chr15:57816816 nonsynonymous SNV 0.617 1 22 hm5C_associated_SNPs_69524 0 0 1 0 1 CGNL1 chr15:57816779 3'AG 57816779 Downstream 38bp
chr3 147130344 147130344 1 + G C HNSC 147130343 + 147130323 147130363 41 GCGAGTTTGAGGGCTGTGACCGGCGCTTCGCTAACAGCAGC GCGAGTTTGAGGGCTGTGACCCGCGCTTCGCTAACAGCAGC < 41bp 0.878242516000788 0.638806224013812 0.9220221 0.3602816 prediction 0.478872583973952 Functional Loss - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147130343 chr3:147130344 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_69525 0 0 1 0 1 ZIC1 chr3:147130305 3'AG 147130305 Downstream 40bp
chr17 40839921 40839921 1 + G A COAD 40839918 + 40839898 40839938 41 GTCTGGGGGACGGGCTGGGCCACGTGGAGCTGACGCTCAGC GTCTGGGGGACGGGCTGGGCCACATGGAGCTGACGCTCAGC < 41bp 0.77017102281921 0.530738917029728 0.2217142 0.21204868 prediction 0.478864211578965 Functional Loss - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40839918 chr17:40839921 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_69528 0 0 1 0 1 CNTNAP1 chr17:40839999 5'GT 40839999 Upstream 79bp
chr10 88419679 88419679 1 + G A SARC 88419676 + 88419656 88419696 41 CTCCAGACCTTCGGGGCCTGCAAGGGCAATGGCGAGTCCCT CTCCAGACCTTCGGGGCCTGCAAAGGCAATGGCGAGTCCCT < 41bp 0.748395129990688 0.508963927761594 0.8047544 0.31318906 prediction 0.478862404458189 Functional Loss - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88419676 chr10:88419679 synonymous SNV . 0 24 hm5C_associated_SNPs_69529 0 0 0 0 1 OPN4 chr10:88419652 3'AG 88419652 Downstream 28bp
chr9 131846956 131846956 1 + C T SKCM 131846954 + 131846934 131846974 41 TCTGTCTTGCCAGGTGATCTCTCTGGCCACCTCCTTGCCTA TCTGTCTTGCCAGGTGATCTCTTTGGCCACCTCCTTGCCTA < 41bp 0.815824669322461 0.576393967202246 0.883652 0.7979022 prediction 0.478861404240431 Functional Loss - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846954 chr9:131846956 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_69530 0 0 1 0 2 DOLPP1 chr9:131846947 3'AG 131846947 Downstream 10bp
chr9 131846956 131846956 1 + C T SKCM 131846954 + 131846934 131846974 41 TCTGTCTTGCCAGGTGATCTCTCTGGCCACCTCCTTGCCTA TCTGTCTTGCCAGGTGATCTCTTTGGCCACCTCCTTGCCTA < 41bp 0.815824669322461 0.576393967202246 0.883652 0.7979022 prediction 0.478861404240431 Functional Loss - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846954 chr9:131846956 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_69530 0 0 1 0 2 DOLPP1 chr9:131847047 5'GT 131847047 Upstream 92bp
chr17 18141444 18141444 1 + C T OV 18141442 + 18141422 18141462 41 CGCTCTCCCGGGTGAAGTCTCTCAAGAAGTCACTGCGCCAG CGCTCTCCCGGGTGAAGTCTCTTAAGAAGTCACTGCGCCAG < 41bp 0.834794185959937 0.595367067382007 0.878805 0.79795957 prediction 0.478854237155859 Functional Loss - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18141442 chr17:18141444 synonymous SNV . 0 23 hm5C_associated_SNPs_69532 0 0 1 0 2 LLGL1 chr17:18141381 3'AG 18141381 Downstream 64bp
chr17 18141444 18141444 1 + C T OV 18141442 + 18141422 18141462 41 CGCTCTCCCGGGTGAAGTCTCTCAAGAAGTCACTGCGCCAG CGCTCTCCCGGGTGAAGTCTCTTAAGAAGTCACTGCGCCAG < 41bp 0.834794185959937 0.595367067382007 0.878805 0.79795957 prediction 0.478854237155859 Functional Loss - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18141442 chr17:18141444 synonymous SNV . 0 23 hm5C_associated_SNPs_69532 0 0 1 0 2 LLGL1 chr17:18141528 5'GT 18141528 Upstream 85bp
chr9 139841131 139841131 1 + C T PRAD 139841129 + 139841109 139841149 41 GCGAGGCTGCAGACCAGTTCCACGTCCTGGACGGTGAGTGC GCGAGGCTGCAGACCAGTTCCATGTCCTGGACGGTGAGTGC < 41bp 0.750391014667819 0.510964221755957 0.406016 0.43520984 prediction 0.478853585823725 Functional Loss - C8G ENSG00000176919 CDS Human protein_coding chr9:139841129 chr9:139841131 synonymous SNV . 0 23 hm5C_associated_SNPs_69533 0 0 1 0 2 C8G chr9:139841103 3'AG 139841103 Downstream 29bp
chr9 139841131 139841131 1 + C T PRAD 139841129 + 139841109 139841149 41 GCGAGGCTGCAGACCAGTTCCACGTCCTGGACGGTGAGTGC GCGAGGCTGCAGACCAGTTCCATGTCCTGGACGGTGAGTGC < 41bp 0.750391014667819 0.510964221755957 0.406016 0.43520984 prediction 0.478853585823725 Functional Loss - C8G ENSG00000176919 CDS Human protein_coding chr9:139841129 chr9:139841131 synonymous SNV . 0 23 hm5C_associated_SNPs_69533 0 0 1 0 2 C8G chr9:139841141 5'GT 139841141 Upstream 11bp
chr1 2237624 2237624 1 + C T STAD 2237622 + 2237602 2237642 41 GAAGCGGGAGCTGGAGCAGGCGCGGCAGGCCCGGGTGTGCG GAAGCGGGAGCTGGAGCAGGCGTGGCAGGCCCGGGTGTGCG < 41bp 0.76722386609168 0.527799637602642 0.7036832 0.6464564 prediction 0.478848456978075 Functional Loss - SKI ENSG00000157933 CDS Human protein_coding chr1:2237622 chr1:2237624 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_69537 0 0 1 0 1 SKI chr1:2237689 5'GT 2237689 Upstream 66bp
chr19 56669881 56669881 1 + G A UCEC 56669878 + 56669858 56669898 41 TTCAGGGGCCAGCAGCCTCCCCCGATGGGTCGTCAGCAACG TTCAGGGGCCAGCAGCCTCCCCCAATGGGTCGTCAGCAACG < 41bp 0.760019929104118 0.520599380497447 0.12324616 0.16954917 prediction 0.478841097213342 Functional Loss - ZNF444 ENSG00000167685 CDS Human protein_coding chr19:56669878 chr19:56669881 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_69539 0 0 1 0 2 ZNF444 chr19:56669863 3'AG 56669863 Downstream 19bp
chr19 56669881 56669881 1 + G A UCEC 56669878 + 56669858 56669898 41 TTCAGGGGCCAGCAGCCTCCCCCGATGGGTCGTCAGCAACG TTCAGGGGCCAGCAGCCTCCCCCAATGGGTCGTCAGCAACG < 41bp 0.760019929104118 0.520599380497447 0.12324616 0.16954917 prediction 0.478841097213342 Functional Loss - ZNF444 ENSG00000167685 CDS Human protein_coding chr19:56669878 chr19:56669881 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_69539 0 0 1 0 2 ZNF444 chr19:56669971 5'GT 56669971 Upstream 91bp
chr1 173735414 173735414 1 + C T LUAD 173735412 + 173735392 173735432 41 GCCAGGATGGTGTGTCTTGCCTCAACATTGTTGAGAGGTGA GCCAGGATGGTGTGTCTTGCCTTAACATTGTTGAGAGGTGA < 41bp 0.739414565307389 0.441568378999315 0.37201136 0.13765264 prediction 0.478829130614778 Functional Loss - KLHL20 ENSG00000076321 CDS Human protein_coding chr1:173735412 chr1:173735414 synonymous SNV . 0 23 hm5C_associated_SNPs_69543 0 0 1 0 1 KLHL20 chr1:173735428 5'GT 173735428 Upstream 15bp
chr13 113536219 113536219 1 + G T UCEC 113536216 + 113536196 113536236 41 GGCTACCAGAGCACCTGTCCCTCGGCCGCCTGGTACAGCTC GGCTACCAGAGCACCTGTCCCTCTGCCGCCTGGTACAGCTC < 41bp 0.739410074453919 0.353649712209749 0.24088553 0.17028895 prediction 0.478820148907837 Functional Loss - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113536216 chr13:113536219 synonymous SNV . 0 24 hm5C_associated_SNPs_69545 0 0 1 0 2 ATP11A chr13:113536130 3'AG 113536130 Downstream 90bp
chr13 113536219 113536219 1 + G T UCEC 113536216 + 113536196 113536236 41 GGCTACCAGAGCACCTGTCCCTCGGCCGCCTGGTACAGCTC GGCTACCAGAGCACCTGTCCCTCTGCCGCCTGGTACAGCTC < 41bp 0.739410074453919 0.353649712209749 0.24088553 0.17028895 prediction 0.478820148907837 Functional Loss - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113536216 chr13:113536219 synonymous SNV . 0 24 hm5C_associated_SNPs_69545 0 0 1 0 2 ATP11A chr13:113536190 3'AG 113536190 Downstream 30bp
chr16 19083337 19083337 1 + G T HNSC 19083335 + 19083315 19083355 41 GCAGCTGTGGATCGAATAATCCGGGTGGATCATGCAGGCGA GCAGCTGTGGATCGAATAATCCTGGTGGATCATGCAGGCGA < 41bp 0.89373153071495 0.654344667854126 0.91481173 0.58380693 prediction 0.478773725721648 Functional Loss - COQ7 ENSG00000167186 CDS Human protein_coding chr16:19083335 chr16:19083337 nonsynonymous SNV 0.987 4 23 hm5C_associated_SNPs_69551 0 0 1 0 2 COQ7 chr16:19083250 3'AG 19083250 Downstream 88bp
chr16 19083337 19083337 1 + G T HNSC 19083335 + 19083315 19083355 41 GCAGCTGTGGATCGAATAATCCGGGTGGATCATGCAGGCGA GCAGCTGTGGATCGAATAATCCTGGTGGATCATGCAGGCGA < 41bp 0.89373153071495 0.654344667854126 0.91481173 0.58380693 prediction 0.478773725721648 Functional Loss - COQ7 ENSG00000167186 CDS Human protein_coding chr16:19083335 chr16:19083337 nonsynonymous SNV 0.987 4 23 hm5C_associated_SNPs_69551 0 0 1 0 2 COQ7 chr16:19083428 5'GT 19083428 Upstream 92bp
chr4 81974564 81974564 1 + G C rs146470758 81974560 + 81974540 81974580 41 GAGAGCTGTGGGGGTCGTTCCTGGGATTCCTGAGCCTTGCT GAGAGCTGTGGGGGTCGTTCCTGGCATTCCTGAGCCTTGCT < 41bp 0.822467271891647 0.583087921805311 0.8861636 0.6792767 prediction 0.478758700172671 Functional Loss - BMP3 ENSG00000152785 CDS Human protein_coding chr4:81974560 chr4:81974564 synonymous SNV . 0 25 hm5C_associated_SNPs_69553 0 0 0 0 1 BMP3 chr4:81974499 3'AG 81974499 Downstream 66bp
chr1 43675499 43675499 1 + C T rs41301054 43675497 + 43675477 43675517 41 CGCATGATGTTTGTGGGCACCTCGGTGGGAACCATTCGTGC CGCATGATGTTTGTGGGCACCTTGGTGGGAACCATTCGTGC < 41bp 0.824671983539552 0.585301280645631 0.42609352 0.40843803 prediction 0.478741405787842 Functional Loss - CFAP57 ENSG00000243710 CDS Human protein_coding chr1:43675497 chr1:43675499 nonsynonymous SNV 0.607 2 23 hm5C_associated_SNPs_69557 0 0 0 0 2 CFAP57 chr1:43675414 3'AG 43675414 Downstream 86bp
chr1 43675499 43675499 1 + C T rs41301054 43675497 + 43675477 43675517 41 CGCATGATGTTTGTGGGCACCTCGGTGGGAACCATTCGTGC CGCATGATGTTTGTGGGCACCTTGGTGGGAACCATTCGTGC < 41bp 0.824671983539552 0.585301280645631 0.42609352 0.40843803 prediction 0.478741405787842 Functional Loss - CFAP57 ENSG00000243710 CDS Human protein_coding chr1:43675497 chr1:43675499 nonsynonymous SNV 0.607 2 23 hm5C_associated_SNPs_69557 0 0 0 0 2 CFAP57 chr1:43675587 5'GT 43675587 Upstream 89bp
chr16 19693584 19693584 1 + A C LUAD 19693580 + 19693560 19693600 41 ATGGGGTCCTGTTTCTTGTTCGAGAGCTTCTCAACGTGATC ATGGGGTCCTGTTTCTTGTTCGAGCGCTTCTCAACGTGATC < 41bp 0.739369945333788 0.336132742245728 0.78169906 0.70057666 prediction 0.478739890667576 Functional Loss - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19693580 chr16:19693584 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_69558 0 0 1 0 1 C16orf62 chr16:19693547 3'AG 19693547 Downstream 38bp
chr7 128846133 128846133 1 + G C SKCM 128846129 + 128846109 128846149 41 GGCACCACCTACCAGCCTCTCTCGGGCAAGACCTCCTACTT GGCACCACCTACCAGCCTCTCTCGCGCAAGACCTCCTACTT < 41bp 0.838948525653884 0.599585383627128 0.06627369 0.09346244 prediction 0.478726284053512 Functional Loss - SMO ENSG00000128602 CDS Human protein_coding chr7:128846129 chr7:128846133 nonsynonymous SNV 0.995 5 25 hm5C_associated_SNPs_69561 0 0 1 0 1 SMO chr7:128846210 5'GT 128846210 Upstream 78bp
chr2 131883461 131883461 1 + C T CESC 131883459 + 131883439 131883479 41 ATGGACTGCATCAACATCCGCACGGGGCAGGAATGTCGGGG ATGGACTGCATCAACATCCGCATGGGGCAGGAATGTCGGGG < 41bp 0.770948238659977 0.531593248420971 0.15268579 0.21877131 prediction 0.478709980478011 Functional Loss - PLEKHB2 ENSG00000115762 CDS Human protein_coding chr2:131883459 chr2:131883461 nonsynonymous SNV 0.658 0 23 hm5C_associated_SNPs_69565 0 0 1 0 1 PLEKHB2 chr2:131883478 5'GT 131883478 Upstream 18bp
chr13 114322358 114322358 1 + G T UCEC 114322355 + 114322335 114322375 41 ACCGGCAAGCTGTATGCCTGCAAGAAGCTGAACAAGAAGCG ACCGGCAAGCTGTATGCCTGCAATAAGCTGAACAAGAAGCG < 41bp 0.739349947947059 0.353417374880573 0.79122317 0.27918476 prediction 0.478699895894118 Functional Loss - GRK1 ENSG00000185974 CDS Human protein_coding chr13:114322355 chr13:114322358 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_69568 0 0 0 0 1 GRK1 chr13:114322400 5'GT 114322400 Upstream 43bp
chr12 13367532 13367532 1 + G T UCEC 13367530 + 13367510 13367550 41 ATGCGAATCGTGATGGAACGCAGTATCACCACGGCTATTCC ATGCGAATCGTGATGGAACGCATTATCACCACGGCTATTCC < 41bp 0.739347978711768 0.401591127954773 0.08041313 0.014503837 prediction 0.478695957423535 Functional Loss - EMP1 ENSG00000134531 CDS Human protein_coding chr12:13367530 chr12:13367532 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_69569 0 0 0 0 2 EMP1 chr12:13367468 3'AG 13367468 Downstream 65bp
chr12 13367532 13367532 1 + G T UCEC 13367530 + 13367510 13367550 41 ATGCGAATCGTGATGGAACGCAGTATCACCACGGCTATTCC ATGCGAATCGTGATGGAACGCATTATCACCACGGCTATTCC < 41bp 0.739347978711768 0.401591127954773 0.08041313 0.014503837 prediction 0.478695957423535 Functional Loss - EMP1 ENSG00000134531 CDS Human protein_coding chr12:13367530 chr12:13367532 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_69569 0 0 0 0 2 EMP1 chr12:13367505 3'AG 13367505 Downstream 28bp
chr17 4796018 4796018 1 + G A BRCA 4796015 + 4795995 4796035 41 ACAGCGTCCTTCCAGCCTCTCACGGGCACCTCCCCCAGGCT ACAGCGTCCTTCCAGCCTCTCACAGGCACCTCCCCCAGGCT < 41bp 0.739346979010974 0.485301352136668 0.73204607 0.10595626 prediction 0.478693958021948 Functional Loss - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4796015 chr17:4796018 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_69571 0 0 1 0 2 MINK1 chr17:4795951 3'AG 4795951 Downstream 68bp
chr17 4796018 4796018 1 + G A BRCA 4796015 + 4795995 4796035 41 ACAGCGTCCTTCCAGCCTCTCACGGGCACCTCCCCCAGGCT ACAGCGTCCTTCCAGCCTCTCACAGGCACCTCCCCCAGGCT < 41bp 0.739346979010974 0.485301352136668 0.73204607 0.10595626 prediction 0.478693958021948 Functional Loss - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4796015 chr17:4796018 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_69571 0 0 1 0 2 MINK1 chr17:4796063 5'GT 4796063 Upstream 46bp
chr1 11728998 11728998 1 + G T BLCA 11728996 + 11728976 11729016 41 CCTCCTGCGCAACCCGTGTGCTGAAGGTGGCATGGGGGCAG CCTCCTGCGCAACCCGTGTGCTTAAGGTGGCATGGGGGCAG < 41bp 0.883152551094844 0.643806463422066 0.4841705 0.3833642 prediction 0.478692175345556 Functional Loss - FBXO6 ENSG00000116663 CDS Human protein_coding chr1:11728996 chr1:11728998 stopgain 0.899 1 23 hm5C_associated_SNPs_69573 0 0 1 0 1 FBXO6 chr1:11729001 5'GT 11729001 Upstream 4bp
chr1 203025622 203025622 1 + G T COAD 203025620 + 203025600 203025640 41 TTGGCCACCCAGCCCTGAGCCAGGAAGAAGGCAAGAGGTAA TTGGCCACCCAGCCCTGAGCCATGAAGAAGGCAAGAGGTAA < 41bp 0.739344548654275 0.390809880062788 0.759894 0.27279282 prediction 0.478689097308549 Functional Loss - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203025620 chr1:203025622 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_69574 0 0 1 0 1 PPFIA4 chr1:203025636 5'GT 203025636 Upstream 15bp
chr2 120012348 120012348 1 + C T BRCA 120012346 + 120012326 120012366 41 CTGGGAGTGCTGGCCCTCGGCACGTTGTCCCTGCTGGCCGT CTGGGAGTGCTGGCCCTCGGCATGTTGTCCCTGCTGGCCGT < 41bp 0.806070854181846 0.566747106602751 0.14226508 0.20996746 prediction 0.478647495158188 Functional Loss - STEAP3 ENSG00000115107 CDS Human protein_coding chr2:120012346 chr2:120012348 nonsynonymous SNV 0.544 1 23 hm5C_associated_SNPs_69578 0 0 1 0 2 STEAP3 chr2:120012260 3'AG 120012260 Downstream 89bp
chr2 120012348 120012348 1 + C T BRCA 120012346 + 120012326 120012366 41 CTGGGAGTGCTGGCCCTCGGCACGTTGTCCCTGCTGGCCGT CTGGGAGTGCTGGCCCTCGGCATGTTGTCCCTGCTGGCCGT < 41bp 0.806070854181846 0.566747106602751 0.14226508 0.20996746 prediction 0.478647495158188 Functional Loss - STEAP3 ENSG00000115107 CDS Human protein_coding chr2:120012346 chr2:120012348 nonsynonymous SNV 0.544 1 23 hm5C_associated_SNPs_69578 0 0 1 0 2 STEAP3 chr2:120012424 5'GT 120012424 Upstream 77bp
chr7 1028300 1028300 1 + G A SKCM 1028297 + 1028277 1028317 41 GCGTCTGTGTTGGGGAGCGCCTGGCCAGGACCGAGCTCTTC GCGTCTGTGTTGGGGAGCGCCTGACCAGGACCGAGCTCTTC < 41bp 0.742533172790636 0.503210756630348 0.18288022 0.19469795 prediction 0.478644832320577 Functional Loss - CYP2W1 ENSG00000073067 CDS Human protein_coding chr7:1028297 chr7:1028300 stopgain 0.956 5 24 hm5C_associated_SNPs_69579 0 0 1 0 1 CYP2W1 chr7:1028271 3'AG 1028271 Downstream 30bp
chr11 61511042 61511042 1 + C T rs201521657 61511040 + 61511020 61511060 41 GAGATGAGCCTGGAGGGCTTCTCGGAGGGGCGGCTGCTGTC GAGATGAGCCTGGAGGGCTTCTTGGAGGGGCGGCTGCTGTC < 41bp 0.73931820697762 0.47452180348582 0.38025126 0.3470332 prediction 0.478636413955239 Functional Loss - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61511040 chr11:61511042 nonsynonymous SNV 0.743 0 23 hm5C_associated_SNPs_69581 0 0 0 0 1 DAGLA chr11:61511004 3'AG 61511004 Downstream 39bp
chr16 32265036 32265036 1 + G T LUAD 32265033 + 32265013 32265053 41 TGCCTCCGCGGCAGGGTTGTCAAGGTAACGCTCCTCAGACA TGCCTCCGCGGCAGGGTTGTCAATGTAACGCTCCTCAGACA < 41bp 0.913386312252592 0.674081144116458 0.89675516 0.1747405 prediction 0.478610336272267 Functional Loss - TP53TG3D ENSG00000205456 CDS Human protein_coding chr16:32265033 chr16:32265036 nonsynonymous SNV 0.013 1 24 hm5C_associated_SNPs_69586 0 0 0 1 1 TP53TG3D chr16:32265036 5'GT 32265036 Upstream 1bp
chr6 54214655 54214655 1 + G T LUAD 54214652 + 54214632 54214672 41 AACAACGTAGAAAAATCTAACAGGATCTATCAATGTTCTCC AACAACGTAGAAAAATCTAACAGTATCTATCAATGTTCTCC < 41bp 0.739304385003161 0.367203583447964 0.42464268 0.12733129 prediction 0.478608770006323 Functional Loss - TINAG ENSG00000137251 CDS Human protein_coding chr6:54214652 chr6:54214655 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_69588 0 0 0 3 1 TINAG chr6:54214694 5'GT 54214694 Upstream 40bp
chr17 38240215 38240215 1 + C T SKCM 38240213 + 38240193 38240233 41 TGCCGCTTCAAGAAGTGCATCGCCGTGGGCATGGCCATGGA TGCCGCTTCAAGAAGTGCATCGTCGTGGGCATGGCCATGGA < 41bp 0.739298123120182 0.462112584741676 0.45229512 0.26659068 prediction 0.478596246240363 Functional Loss - THRA ENSG00000126351 CDS Human protein_coding chr17:38240213 chr17:38240215 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_69590 0 0 0 0 1 THRA chr17:38240235 5'GT 38240235 Upstream 21bp
chr2 96047430 96047430 1 + G T STAD 96047427 + 96047407 96047447 41 TTTAATCTCTACGACATTAACAAGGATGGCTACATCACCAA TTTAATCTCTACGACATTAACAATGATGGCTACATCACCAA < 41bp 0.739298061314856 0.346277222951855 0.8729659 0.16408244 prediction 0.478596122629712 Functional Loss - KCNIP3 ENSG00000115041 CDS Human protein_coding chr2:96047427 chr2:96047430 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_69591 0 0 0 0 2 KCNIP3 chr2:96047344 3'AG 96047344 Downstream 87bp
chr2 96047430 96047430 1 + G T STAD 96047427 + 96047407 96047447 41 TTTAATCTCTACGACATTAACAAGGATGGCTACATCACCAA TTTAATCTCTACGACATTAACAATGATGGCTACATCACCAA < 41bp 0.739298061314856 0.346277222951855 0.8729659 0.16408244 prediction 0.478596122629712 Functional Loss - KCNIP3 ENSG00000115041 CDS Human protein_coding chr2:96047427 chr2:96047430 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_69591 0 0 0 0 2 KCNIP3 chr2:96047451 5'GT 96047451 Upstream 22bp
chr14 20940627 20940627 1 + C T LGG 20940625 + 20940605 20940645 41 CGGTGAAATCCCCAACTTTCCCCGAAGTACAGGTACTGGCA CGGTGAAATCCCCAACTTTCCCTGAAGTACAGGTACTGGCA < 41bp 0.739291507163809 0.455283806282323 0.43211645 0.25860426 prediction 0.478583014327617 Functional Loss - PNP ENSG00000198805 CDS Human protein_coding chr14:20940625 chr14:20940627 stopgain 0.692 0 23 hm5C_associated_SNPs_69593 1 0 1 0 1 PNP chr14:20940636 5'GT 20940636 Upstream 10bp
chr14 20940629 20940629 1 + A T LUAD 20940625 + 20940605 20940645 41 CGGTGAAATCCCCAACTTTCCCCGAAGTACAGGTACTGGCA CGGTGAAATCCCCAACTTTCCCCGTAGTACAGGTACTGGCA < 41bp 0.739291507163809 0.399242970359677 0.43211645 0.30912173 prediction 0.478583014327617 Functional Loss - PNP ENSG00000198805 CDS Human protein_coding chr14:20940625 chr14:20940629 synonymous SNV . 0 25 hm5C_associated_SNPs_69594 0 0 1 0 1 PNP chr14:20940636 5'GT 20940636 Upstream 8bp
chr13 78165564 78165564 1 + G T UCEC 78165562 + 78165542 78165582 41 ACCTAAACCAGGTGTATATACAGAAACCAACAGATCTGCTG ACCTAAACCAGGTGTATATACATAAACCAACAGATCTGCTG < 41bp 0.739284930733947 0.401940853559487 0.11111987 0.041994154 prediction 0.478569861467894 Functional Loss - SCEL ENSG00000136155 CDS Human protein_coding chr13:78165562 chr13:78165564 stopgain 0.792 0 23 hm5C_associated_SNPs_69595 0 0 0 0 2 SCEL chr13:78165530 3'AG 78165530 Downstream 35bp
chr13 78165564 78165564 1 + G T UCEC 78165562 + 78165542 78165582 41 ACCTAAACCAGGTGTATATACAGAAACCAACAGATCTGCTG ACCTAAACCAGGTGTATATACATAAACCAACAGATCTGCTG < 41bp 0.739284930733947 0.401940853559487 0.11111987 0.041994154 prediction 0.478569861467894 Functional Loss - SCEL ENSG00000136155 CDS Human protein_coding chr13:78165562 chr13:78165564 stopgain 0.792 0 23 hm5C_associated_SNPs_69595 0 0 0 0 2 SCEL chr13:78165595 5'GT 78165595 Upstream 32bp
chr7 141423763 141423763 1 + G T CESC 141423760 + 141423740 141423780 41 GGTAATATATTCATTTGTCACAAGATGCAAAGTGAATCCTC GGTAATATATTCATTTGTCACAATATGCAAAGTGAATCCTC < 41bp 0.739283344460819 0.370382778945231 0.87224936 0.24075574 prediction 0.478566688921637 Functional Loss - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141423760 chr7:141423763 nonsynonymous SNV 0.972 0 24 hm5C_associated_SNPs_69596 0 0 0 0 2 WEE2 chr7:141423741 3'AG 141423741 Downstream 23bp
chr7 141423763 141423763 1 + G T CESC 141423760 + 141423740 141423780 41 GGTAATATATTCATTTGTCACAAGATGCAAAGTGAATCCTC GGTAATATATTCATTTGTCACAATATGCAAAGTGAATCCTC < 41bp 0.739283344460819 0.370382778945231 0.87224936 0.24075574 prediction 0.478566688921637 Functional Loss - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141423760 chr7:141423763 nonsynonymous SNV 0.972 0 24 hm5C_associated_SNPs_69596 0 0 0 0 2 WEE2 chr7:141423848 5'GT 141423848 Upstream 86bp
chr19 19576355 19576355 1 + G A UCEC 19576352 + 19576332 19576372 41 TTGCTGAGGGCAACAGAGGCCACGGCCATGGCCATGGGCAG TTGCTGAGGGCAACAGAGGCCACAGCCATGGCCATGGGCAG < 41bp 0.741638298704491 0.502358539938751 0.30839676 0.14082941 prediction 0.478559517531482 Functional Loss - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19576352 chr19:19576355 synonymous SNV . 0 24 hm5C_associated_SNPs_69598 0 0 1 0 1 GATAD2A chr19:19576423 5'GT 19576423 Upstream 69bp
chr2 71187104 71187104 1 + G A rs114234874 71187101 + 71187081 71187121 41 ACCCGCACTCCCGCATCTACCCCGAGGAGATGATTCAGACG ACCCGCACTCCCGCATCTACCCCAAGGAGATGATTCAGACG < 41bp 0.758571694324101 0.519292959214674 0.12706816 0.067083 prediction 0.478557470218853 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71187101 chr2:71187104 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_69599 2 0 0 0 1 ATP6V1B1 chr2:71187069 3'AG 71187069 Downstream 36bp
chr3 138668461 138668461 1 + A T LUSC 138668457 + 138668437 138668477 41 TGTGCCTTCACATGGCTGTCCGGCATTCGAAGGCTCAGAAA TGTGCCTTCACATGGCTGTCCGGCTTTCGAAGGCTCAGAAA < 41bp 0.875082902177852 0.635815081622415 0.48125556 0.37805474 prediction 0.478535641110876 Functional Loss - FOXL2NB ENSG00000206262 CDS Human protein_coding chr3:138668457 chr3:138668461 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_69601 0 0 0 0 1 FOXL2NB chr3:138668362 3'AG 138668362 Downstream 100bp
chr10 43596137 43596137 1 + G A rs201244749 43596134 + 43596114 43596154 41 TCCTCTACCTTAACCGGAGCCTGGACCATAGCTCCTGGGAG TCCTCTACCTTAACCGGAGCCTGAACCATAGCTCCTGGGAG < 41bp 0.75382052238272 0.514556018987534 0.39308247 0.35324967 prediction 0.478529006790373 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43596134 chr10:43596137 nonsynonymous SNV 0.902 1 24 hm5C_associated_SNPs_69602 1 0 0 0 1 RET chr10:43596170 5'GT 43596170 Upstream 34bp
chr7 129919343 129919343 1 + C T rs17591 129919341 + 129919321 129919361 41 ACCCTTGCTCTGATTCATACCACGGACCCAGTGCCAACTCT ACCCTTGCTCTGATTCATACCATGGACCCAGTGCCAACTCT < 41bp 0.815571213474184 0.576309318569092 0.011445373 0.011998564 prediction 0.478523789810183 Functional Loss - CPA2 ENSG00000158516 CDS Human protein_coding chr7:129919341 chr7:129919343 synonymous SNV . 0 23 hm5C_associated_SNPs_69603 0 0 0 0 1 CPA2 chr7:129919303 3'AG 129919303 Downstream 41bp
chrX 130220339 130220339 1 + G T HNSC 130220336 + 130220316 130220356 41 TTCAGAGGCAGGTTGCTAAGCGCGTGTGGAAGTCCAGCCCG TTCAGAGGCAGGTTGCTAAGCGCTTGTGGAAGTCCAGCCCG < 41bp 0.924256503708235 0.684999785251248 0.78486896 0.47645506 prediction 0.478513436913974 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220336 chrX:130220339 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_69606 0 0 0 0 2 ARHGAP36 chrX:130220303 3'AG 130220303 Downstream 37bp
chrX 130220339 130220339 1 + G T HNSC 130220336 + 130220316 130220356 41 TTCAGAGGCAGGTTGCTAAGCGCGTGTGGAAGTCCAGCCCG TTCAGAGGCAGGTTGCTAAGCGCTTGTGGAAGTCCAGCCCG < 41bp 0.924256503708235 0.684999785251248 0.78486896 0.47645506 prediction 0.478513436913974 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220336 chrX:130220339 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_69606 0 0 0 0 2 ARHGAP36 chrX:130220400 5'GT 130220400 Upstream 62bp
chr22 50636413 50636413 1 + G A LGG 50636410 + 50636390 50636430 41 CGCGCGGCGCCTCGAGCTGCCTCGGGCCTCTGACGGTGACG CGCGCGGCGCCTCGAGCTGCCTCAGGCCTCTGACGGTGACG < 41bp 0.750174798118485 0.510920571582516 0.4223165 0.31068718 prediction 0.478508453071938 Functional Loss - TRABD ENSG00000170638 CDS Human protein_coding chr22:50636410 chr22:50636413 nonsynonymous SNV 0.041 2 24 hm5C_associated_SNPs_69609 0 0 1 0 1 TRABD chr22:50636424 5'GT 50636424 Upstream 12bp
chr1 92710373 92710373 1 + A C UCEC 92710372 + 92710352 92710392 41 TTACGAATACTTCCAGTACACAACACAGTAAATGCTATTAA TTACGAATACTTCCAGTACACCACACAGTAAATGCTATTAA < 41bp 0.739389144057692 0.500136267520307 0.024333984 0.018742591 prediction 0.47850575307477 Functional Loss - C1orf146 ENSG00000203910 CDS Human protein_coding chr1:92710372 chr1:92710373 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_69611 0 0 0 0 2 C1orf146 chr1:92710336 3'AG 92710336 Downstream 38bp
chr1 92710373 92710373 1 + A C UCEC 92710372 + 92710352 92710392 41 TTACGAATACTTCCAGTACACAACACAGTAAATGCTATTAA TTACGAATACTTCCAGTACACCACACAGTAAATGCTATTAA < 41bp 0.739389144057692 0.500136267520307 0.024333984 0.018742591 prediction 0.47850575307477 Functional Loss - C1orf146 ENSG00000203910 CDS Human protein_coding chr1:92710372 chr1:92710373 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_69611 0 0 0 0 2 C1orf146 chr1:92710414 5'GT 92710414 Upstream 42bp
chr2 216190732 216190732 1 + T C rs140829407 216190731 + 216190711 216190751 41 TGGAGTAACCTTACTGAGAGCTGCAGCCAAAAACCACGCTC TGGAGTAACCTTACTGAGAGCCGCAGCCAAAAACCACGCTC < 41bp 0.739251708157066 0.494622023243349 0.4110511 0.39395726 prediction 0.478503416314133 Functional Loss - ATIC ENSG00000138363 CDS Human protein_coding chr2:216190731 chr2:216190732 synonymous SNV . 0 22 hm5C_associated_SNPs_69613 0 0 1 0 1 ATIC chr2:216190710 3'AG 216190710 Downstream 23bp
chr17 28712021 28712021 1 + G T UCEC 28712018 + 28711998 28712038 41 TTTTCAAAGGTTTGTGCTTTCTGGAAATCTGCATGGTGGCT TTTTCAAAGGTTTGTGCTTTCTGTAAATCTGCATGGTGGCT < 41bp 0.739244826208877 0.367515816993461 0.19049835 0.20422485 prediction 0.478489652417753 Functional Loss - CPD ENSG00000108582 CDS Human protein_coding chr17:28712018 chr17:28712021 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_69615 0 0 1 0 1 CPD chr17:28712007 3'AG 28712007 Downstream 15bp
chr2 63206380 63206380 1 + G T UCEC 63206378 + 63206358 63206398 41 GAGAGCTCGTCAGCTAATAGCAGAAGCTCGATCTGGAGTGA GAGAGCTCGTCAGCTAATAGCATAAGCTCGATCTGGAGTGA < 41bp 0.739243491503657 0.411409399424422 0.88956296 0.317218 prediction 0.478486983007314 Functional Loss - EHBP1 ENSG00000115504 CDS Human protein_coding chr2:63206378 chr2:63206380 stopgain 1.000 1 23 hm5C_associated_SNPs_69616 0 0 1 0 2 EHBP1 chr2:63206323 3'AG 63206323 Downstream 58bp
chr2 63206380 63206380 1 + G T UCEC 63206378 + 63206358 63206398 41 GAGAGCTCGTCAGCTAATAGCAGAAGCTCGATCTGGAGTGA GAGAGCTCGTCAGCTAATAGCATAAGCTCGATCTGGAGTGA < 41bp 0.739243491503657 0.411409399424422 0.88956296 0.317218 prediction 0.478486983007314 Functional Loss - EHBP1 ENSG00000115504 CDS Human protein_coding chr2:63206378 chr2:63206380 stopgain 1.000 1 23 hm5C_associated_SNPs_69616 0 0 1 0 2 EHBP1 chr2:63206470 5'GT 63206470 Upstream 91bp
chr8 75924705 75924705 1 + G T LUAD 75924703 + 75924683 75924723 41 CTGGAAAGATCTGCAGAATCCTGGGCTGAAAGTTGCTTGTG CTGGAAAGATCTGCAGAATCCTTGGCTGAAAGTTGCTTGTG < 41bp 0.890170804979906 0.65093007782683 0.8463018 0.14397004 prediction 0.478481454306152 Functional Loss - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75924703 chr8:75924705 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_69617 0 0 1 0 2 CRISPLD1 chr8:75924668 3'AG 75924668 Downstream 38bp
chr8 75924705 75924705 1 + G T LUAD 75924703 + 75924683 75924723 41 CTGGAAAGATCTGCAGAATCCTGGGCTGAAAGTTGCTTGTG CTGGAAAGATCTGCAGAATCCTTGGCTGAAAGTTGCTTGTG < 41bp 0.890170804979906 0.65093007782683 0.8463018 0.14397004 prediction 0.478481454306152 Functional Loss - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75924703 chr8:75924705 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_69617 0 0 1 0 2 CRISPLD1 chr8:75924786 5'GT 75924786 Upstream 82bp
chr1 1389806 1389806 1 + C T UCEC 1389804 + 1389784 1389824 41 CACTGGCCGCTACATCGAGGCTCGGCTGGGGAAGCCGTCCC CACTGGCCGCTACATCGAGGCTTGGCTGGGGAAGCCGTCCC < 41bp 0.801180822424381 0.561941270696061 0.310149 0.3101821 prediction 0.47847910345664 Functional Loss - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1389804 chr1:1389806 nonsynonymous SNV 0.001 5 23 hm5C_associated_SNPs_69618 0 0 0 0 2 ATAD3C chr1:1389725 3'AG 1389725 Downstream 82bp
chr1 1389806 1389806 1 + C T UCEC 1389804 + 1389784 1389824 41 CACTGGCCGCTACATCGAGGCTCGGCTGGGGAAGCCGTCCC CACTGGCCGCTACATCGAGGCTTGGCTGGGGAAGCCGTCCC < 41bp 0.801180822424381 0.561941270696061 0.310149 0.3101821 prediction 0.47847910345664 Functional Loss - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1389804 chr1:1389806 nonsynonymous SNV 0.001 5 23 hm5C_associated_SNPs_69618 0 0 0 0 2 ATAD3C chr1:1389880 5'GT 1389880 Upstream 75bp
chr3 183824061 183824061 1 + G A UCEC 183824058 + 183824038 183824078 41 CTGCTGCTCCACTGCAACAGCCCGGGGAGATGCTGTCCCAC CTGCTGCTCCACTGCAACAGCCCAGGGAGATGCTGTCCCAC < 41bp 0.778275387522637 0.539036026400137 0.5815317 0.3093503 prediction 0.478478722244999 Functional Loss - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183824058 chr3:183824061 synonymous SNV . 0 24 hm5C_associated_SNPs_69619 0 0 0 0 1 HTR3E chr3:183824131 5'GT 183824131 Upstream 71bp
chr2 135602847 135602847 1 + G T rs80045521 135602844 + 135602824 135602864 41 GTGCAGCTCCAACACCACAGCAAGGTGAGTTTCTTCCAAAG GTGCAGCTCCAACACCACAGCAATGTGAGTTTCTTCCAAAG < 41bp 0.739236924424421 0.45455539850665 0.66211027 0.14625373 prediction 0.478473848848842 Functional Loss - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135602844 chr2:135602847 nonsynonymous SNV 0.722 0 24 hm5C_associated_SNPs_69621 0 0 0 0 2 ACMSD chr2:135602803 3'AG 135602803 Downstream 45bp
chr2 135602847 135602847 1 + G T rs80045521 135602844 + 135602824 135602864 41 GTGCAGCTCCAACACCACAGCAAGGTGAGTTTCTTCCAAAG GTGCAGCTCCAACACCACAGCAATGTGAGTTTCTTCCAAAG < 41bp 0.739236924424421 0.45455539850665 0.66211027 0.14625373 prediction 0.478473848848842 Functional Loss - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135602844 chr2:135602847 nonsynonymous SNV 0.722 0 24 hm5C_associated_SNPs_69621 0 0 0 0 2 ACMSD chr2:135602847 5'GT 135602847 Upstream 1bp
chr7 106513287 106513287 1 + G A SKCM 106513284 + 106513264 106513304 41 GCTGTGGCACAGCCATGCTGCACGACTTTACCCAACAAGTC GCTGTGGCACAGCCATGCTGCACAACTTTACCCAACAAGTC < 41bp 0.740388844151449 0.501158434439153 0.042006552 0.038282603 prediction 0.478460819424593 Functional Loss - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106513284 chr7:106513287 nonsynonymous SNV 0.983 2 24 hm5C_associated_SNPs_69623 0 0 0 0 1 PIK3CG chr7:106513383 5'GT 106513383 Upstream 97bp
chr16 20451195 20451195 1 + A T LUAD 20451191 + 20451171 20451211 41 CAGAGGCACTAACGCGGGAACTCCAGGAGCATGTGAAAAGG CAGAGGCACTAACGCGGGAACTCCTGGAGCATGTGAAAAGG < 41bp 0.739229466892547 0.38010157604973 0.9610206 0.1709443 prediction 0.478458933785095 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20451191 chr16:20451195 nonsynonymous SNV 0.761 4 25 hm5C_associated_SNPs_69624 0 0 0 0 2 ACSM5 chr16:20451122 3'AG 20451122 Downstream 74bp
chr16 20451195 20451195 1 + A T LUAD 20451191 + 20451171 20451211 41 CAGAGGCACTAACGCGGGAACTCCAGGAGCATGTGAAAAGG CAGAGGCACTAACGCGGGAACTCCTGGAGCATGTGAAAAGG < 41bp 0.739229466892547 0.38010157604973 0.9610206 0.1709443 prediction 0.478458933785095 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20451191 chr16:20451195 nonsynonymous SNV 0.761 4 25 hm5C_associated_SNPs_69624 0 0 0 0 2 ACSM5 chr16:20451241 5'GT 20451241 Upstream 47bp
chr7 128477785 128477785 1 + G T UCEC 128477782 + 128477762 128477802 41 GGCGAGGTGCTGGTCTACATCGAGGACCCTGAAGGCCACAC GGCGAGGTGCTGGTCTACATCGATGACCCTGAAGGCCACAC < 41bp 0.739226611176975 0.354605828574674 0.9188014 0.87695014 prediction 0.47845322235395 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128477782 chr7:128477785 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_69625 0 0 1 0 2 FLNC chr7:128477691 3'AG 128477691 Downstream 95bp
chr7 128477785 128477785 1 + G T UCEC 128477782 + 128477762 128477802 41 GGCGAGGTGCTGGTCTACATCGAGGACCCTGAAGGCCACAC GGCGAGGTGCTGGTCTACATCGATGACCCTGAAGGCCACAC < 41bp 0.739226611176975 0.354605828574674 0.9188014 0.87695014 prediction 0.47845322235395 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128477782 chr7:128477785 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_69625 0 0 1 0 2 FLNC chr7:128477809 5'GT 128477809 Upstream 25bp
chr16 1825372 1825372 1 + G A rs74763106 1825369 + 1825349 1825389 41 GCCAGAGAGCCCGAAGGTGGCCGGTGCCGAGGTGGCCGTCA GCCAGAGAGCCCGAAGGTGGCCGATGCCGAGGTGGCCGTCA < 41bp 0.741161470472246 0.501946094269802 0.52042407 0.33564374 prediction 0.478430752404886 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825369 chr16:1825372 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_69629 0 0 1 0 3 EME2 chr16:1825316 3'AG 1825316 Downstream 57bp
chr16 1825372 1825372 1 + G A rs74763106 1825369 + 1825349 1825389 41 GCCAGAGAGCCCGAAGGTGGCCGGTGCCGAGGTGGCCGTCA GCCAGAGAGCCCGAAGGTGGCCGATGCCGAGGTGGCCGTCA < 41bp 0.741161470472246 0.501946094269802 0.52042407 0.33564374 prediction 0.478430752404886 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825369 chr16:1825372 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_69629 0 0 1 0 3 EME2 chr16:1825409 5'GT 1825409 Upstream 38bp
chr16 1825372 1825372 1 + G A rs74763106 1825369 + 1825349 1825389 41 GCCAGAGAGCCCGAAGGTGGCCGGTGCCGAGGTGGCCGTCA GCCAGAGAGCCCGAAGGTGGCCGATGCCGAGGTGGCCGTCA < 41bp 0.741161470472246 0.501946094269802 0.52042407 0.33564374 prediction 0.478430752404886 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825369 chr16:1825372 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_69629 0 0 1 0 3 EME2 chr16:1825430 5'GT 1825430 Upstream 59bp
chr16 24888627 24888627 1 + G A LGG 24888624 + 24888604 24888644 41 TCATCCAGCAGTCTTTGCACCTGGATCTGTACCTGGCCATA TCATCCAGCAGTCTTTGCACCTGAATCTGTACCTGGCCATA < 41bp 0.746765435643803 0.507554585738414 0.6502621 0.30862105 prediction 0.478421699810778 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24888624 chr16:24888627 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_69631 0 0 0 0 2 SLC5A11 chr16:24888579 3'AG 24888579 Downstream 49bp
chr16 24888627 24888627 1 + G A LGG 24888624 + 24888604 24888644 41 TCATCCAGCAGTCTTTGCACCTGGATCTGTACCTGGCCATA TCATCCAGCAGTCTTTGCACCTGAATCTGTACCTGGCCATA < 41bp 0.746765435643803 0.507554585738414 0.6502621 0.30862105 prediction 0.478421699810778 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24888624 chr16:24888627 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_69631 0 0 0 0 2 SLC5A11 chr16:24888684 5'GT 24888684 Upstream 58bp
chr20 372134 372134 1 + G A SKCM 372131 + 372111 372151 41 GAGGCTGCCGTGCTCTTCCGCCAGATGGCCACCGCCCTGGC GAGGCTGCCGTGCTCTTCCGCCAAATGGCCACCGCCCTGGC < 41bp 0.739205923263264 0.484155523424863 0.8693726 0.55812615 prediction 0.478411846526527 Functional Loss - TRIB3 ENSG00000101255 CDS Human protein_coding chr20:372131 chr20:372134 synonymous SNV . 0 24 hm5C_associated_SNPs_69634 0 0 1 0 1 TRIB3 chr20:372223 5'GT 372223 Upstream 90bp
chr20 61936898 61936898 1 + G A UCEC 61936895 + 61936875 61936915 41 CTCTGGGCGCTTCCTGCTAGCTCGGAGGGAGTTTGTGAGTA CTCTGGGCGCTTCCTGCTAGCTCAGAGGGAGTTTGTGAGTA < 41bp 0.750072773318547 0.510869736584259 0.26709417 0.27470073 prediction 0.478406073468576 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61936895 chr20:61936898 nonsynonymous SNV 0.556 1 24 hm5C_associated_SNPs_69637 0 0 0 0 1 COL20A1 chr20:61936912 5'GT 61936912 Upstream 15bp
chr12 111079383 111079383 1 + G T UCEC 111079381 + 111079361 111079401 41 AGTCCCTCTCAGTGGAAACCCTGGTTATGTCGTGGGGCTCC AGTCCCTCTCAGTGGAAACCCTTGTTATGTCGTGGGGCTCC < 41bp 0.739200621985768 0.405837713961321 0.052790016 0.04331273 prediction 0.478401243971536 Functional Loss - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111079381 chr12:111079383 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_69639 0 0 0 0 1 TCTN1 chr12:111079347 3'AG 111079347 Downstream 37bp
chr2 136537757 136537757 1 + G T TGCT 136537754 + 136537734 136537774 41 TTTGTTTATTAATTTCTAGGCAGGAAGACCAACTGCATCCA TTTGTTTATTAATTTCTAGGCAGTAAGACCAACTGCATCCA < 41bp 0.739200227642334 0.361661365056015 0.46109802 0.10613069 prediction 0.478400455284667 Functional Loss - UBXN4 ENSG00000144224 CDS Human protein_coding chr2:136537754 chr2:136537757 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_69640 0 0 1 0 1 UBXN4 chr2:136537753 3'AG 136537753 Downstream 5bp
chr8 124810476 124810476 1 + C T HNSC 124810474 + 124810454 124810494 41 GCCTGTCAGCAGCTGCACCCCTCAGGTAAAGACCTACTTGG GCCTGTCAGCAGCTGCACCCCTTAGGTAAAGACCTACTTGG < 41bp 0.739198480418508 0.4663476100456 0.16936019 0.06595659 prediction 0.478396960837017 Functional Loss - FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124810474 chr8:124810476 stopgain 0.980 1 23 hm5C_associated_SNPs_69641 0 0 1 0 1 FAM91A1 chr8:124810478 5'GT 124810478 Upstream 3bp
chr11 55657482 55657482 1 + A T OV 55657478 + 55657458 55657498 41 CCAGAGCTCAGTGCAGGGCCCATCACTGGACTGCTGGACAG CCAGAGCTCAGTGCAGGGCCCATCTCTGGACTGCTGGACAG < 41bp 0.739183586776321 0.415442573591798 0.07217753 0.050970852 prediction 0.478367173552642 Functional Loss - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55657478 chr11:55657482 nonsynonymous SNV 0.025 0 25 hm5C_associated_SNPs_69647 0 0 0 0 2 TRIM51 chr11:55657418 3'AG 55657418 Downstream 65bp
chr11 55657482 55657482 1 + A T OV 55657478 + 55657458 55657498 41 CCAGAGCTCAGTGCAGGGCCCATCACTGGACTGCTGGACAG CCAGAGCTCAGTGCAGGGCCCATCTCTGGACTGCTGGACAG < 41bp 0.739183586776321 0.415442573591798 0.07217753 0.050970852 prediction 0.478367173552642 Functional Loss - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55657478 chr11:55657482 nonsynonymous SNV 0.025 0 25 hm5C_associated_SNPs_69647 0 0 0 0 2 TRIM51 chr11:55657515 5'GT 55657515 Upstream 34bp
chr10 89717672 89717672 1 + C T CESC 89717670 + 89717650 89717690 41 TTCCTCCAATTCAGGACCCACACGACGGGAAGACAAGTTCA TTCCTCCAATTCAGGACCCACATGACGGGAAGACAAGTTCA < 41bp 0.739179109090182 0.451106791008172 0.027666122 0.027178556 prediction 0.478358218180365 Functional Loss - PTEN ENSG00000171862 CDS Human protein_coding chr10:89717670 chr10:89717672 stopgain 0.999 1 23 hm5C_associated_SNPs_69649 10 0 1 0 1 PTEN chr10:89717610 3'AG 89717610 Downstream 63bp
chr20 32232208 32232208 1 + C T COAD 32232206 + 32232186 32232226 41 ACATGCAGTGGCTGCAATATCGCGCGATACTGTGGCTCTTT ACATGCAGTGGCTGCAATATCGTGCGATACTGTGGCTCTTT < 41bp 0.771732290768116 0.532555669827488 0.91883504 0.9143661 prediction 0.478353241881255 Functional Loss - CBFA2T2 ENSG00000078699 CDS Human protein_coding chr20:32232206 chr20:32232208 nonsynonymous SNV 0.605 3 23 hm5C_associated_SNPs_69650 0 0 0 0 1 CBFA2T2 chr20:32232153 3'AG 32232153 Downstream 56bp
chr10 102738691 102738691 1 + G A SKCM 102738688 + 102738668 102738708 41 GACAAGGTGTACTACTTCTTCACGGAGCGTGCCACTGAGGA GACAAGGTGTACTACTTCTTCACAGAGCGTGCCACTGAGGA < 41bp 0.745077246732068 0.50590618472045 0.22150815 0.08588025 prediction 0.478342124023235 Functional Loss - SEMA4G ENSG00000095539 CDS Human protein_coding chr10:102738688 chr10:102738691 synonymous SNV . 0 24 hm5C_associated_SNPs_69654 0 0 1 0 2 SEMA4G chr10:102738606 3'AG 102738606 Downstream 86bp
chr10 102738691 102738691 1 + G A SKCM 102738688 + 102738668 102738708 41 GACAAGGTGTACTACTTCTTCACGGAGCGTGCCACTGAGGA GACAAGGTGTACTACTTCTTCACAGAGCGTGCCACTGAGGA < 41bp 0.745077246732068 0.50590618472045 0.22150815 0.08588025 prediction 0.478342124023235 Functional Loss - SEMA4G ENSG00000095539 CDS Human protein_coding chr10:102738688 chr10:102738691 synonymous SNV . 0 24 hm5C_associated_SNPs_69654 0 0 1 0 2 SEMA4G chr10:102738775 5'GT 102738775 Upstream 85bp
chr10 122334703 122334703 1 + C T SKCM 122334701 + 122334681 122334721 41 GCGGGCAAGCTGCACTGCTTCACCGAGAGTGGGCGGGGAAA GCGGGCAAGCTGCACTGCTTCATCGAGAGTGGGCGGGGAAA < 41bp 0.739167579021481 0.462518640430881 0.33670592 0.36249304 prediction 0.478335158042963 Functional Loss - PLPP4 ENSG00000203805 CDS Human protein_coding chr10:122334701 chr10:122334703 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_69655 0 0 0 0 1 PLPP4 chr10:122334643 3'AG 122334643 Downstream 61bp
chr19 14554341 14554341 1 + G A STAD 14554338 + 14554318 14554358 41 GCTCGGCCACCAACCTGAGCCGCGTGGCGGGCCTGGAGAAG GCTCGGCCACCAACCTGAGCCGCATGGCGGGCCTGGAGAAG < 41bp 0.739167397883774 0.494271869221555 0.40556017 0.23858052 prediction 0.478334795767548 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14554338 chr19:14554341 nonsynonymous SNV 0.106 2 24 hm5C_associated_SNPs_69656 0 0 1 0 2 PKN1 chr19:14554282 3'AG 14554282 Downstream 60bp
chr19 14554341 14554341 1 + G A STAD 14554338 + 14554318 14554358 41 GCTCGGCCACCAACCTGAGCCGCGTGGCGGGCCTGGAGAAG GCTCGGCCACCAACCTGAGCCGCATGGCGGGCCTGGAGAAG < 41bp 0.739167397883774 0.494271869221555 0.40556017 0.23858052 prediction 0.478334795767548 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14554338 chr19:14554341 nonsynonymous SNV 0.106 2 24 hm5C_associated_SNPs_69656 0 0 1 0 2 PKN1 chr19:14554433 5'GT 14554433 Upstream 93bp
chr11 64065643 64065643 1 + C T PRAD 64065641 + 64065621 64065661 41 TGGTGTGGTTCTGGATCCTGCTCGGCCTGGCTTACTTCGCC TGGTGTGGTTCTGGATCCTGCTTGGCCTGGCTTACTTCGCC < 41bp 0.739166181355349 0.480855577877111 0.25839582 0.20593712 prediction 0.478332362710699 Functional Loss - KCNK4 ENSG00000182450 CDS Human protein_coding chr11:64065641 chr11:64065643 nonsynonymous SNV 0.994 0 23 hm5C_associated_SNPs_69657 0 0 0 0 2 KCNK4 chr11:64065582 3'AG 64065582 Downstream 62bp
chr11 64065643 64065643 1 + C T PRAD 64065641 + 64065621 64065661 41 TGGTGTGGTTCTGGATCCTGCTCGGCCTGGCTTACTTCGCC TGGTGTGGTTCTGGATCCTGCTTGGCCTGGCTTACTTCGCC < 41bp 0.739166181355349 0.480855577877111 0.25839582 0.20593712 prediction 0.478332362710699 Functional Loss - KCNK4 ENSG00000182450 CDS Human protein_coding chr11:64065641 chr11:64065643 nonsynonymous SNV 0.994 0 23 hm5C_associated_SNPs_69657 0 0 0 0 2 KCNK4 chr11:64065721 5'GT 64065721 Upstream 79bp
chr2 95691596 95691596 1 + C T rs145146615 95691594 + 95691574 95691614 41 CCCAGTGGCTTCTCGGTCTTCACCACCTTGCCCGACTTGCT CCCAGTGGCTTCTCGGTCTTCATCACCTTGCCCGACTTGCT < 41bp 0.769089041127331 0.529927098913621 0.09105283 0.07848579 prediction 0.47832388442742 Functional Loss - MAL ENSG00000172005 CDS Human protein_coding chr2:95691594 chr2:95691596 nonsynonymous SNV 0.992 0 23 hm5C_associated_SNPs_69659 0 0 0 0 1 MAL chr2:95691630 5'GT 95691630 Upstream 35bp
chr3 10108949 10108949 1 + T C COAD 10108948 + 10108928 10108968 41 GATGAAGGGGAAGGTGCTCACTCGGTTAAAGCACATTGTAG GATGAAGGGGAAGGTGCTCACCCGGTTAAAGCACATTGTAG < 41bp 0.753815686610113 0.51465575708743 0.11477932 0.17927074 prediction 0.478319859045365 Functional Loss - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10108948 chr3:10108949 synonymous SNV . 0 22 hm5C_associated_SNPs_69660 0 0 1 1 2 FANCD2 chr3:10108893 3'AG 10108893 Downstream 57bp
chr3 10108949 10108949 1 + T C COAD 10108948 + 10108928 10108968 41 GATGAAGGGGAAGGTGCTCACTCGGTTAAAGCACATTGTAG GATGAAGGGGAAGGTGCTCACCCGGTTAAAGCACATTGTAG < 41bp 0.753815686610113 0.51465575708743 0.11477932 0.17927074 prediction 0.478319859045365 Functional Loss - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10108948 chr3:10108949 synonymous SNV . 0 22 hm5C_associated_SNPs_69660 0 0 1 1 2 FANCD2 chr3:10109001 5'GT 10109001 Upstream 53bp
chr17 6690669 6690669 1 + G T SARC 6690667 + 6690647 6690687 41 CGAATGAAGAGGACAAGACCCTGCAGGAAATTTACAGGAAG CGAATGAAGAGGACAAGACCCTTCAGGAAATTTACAGGAAG < 41bp 0.739159809916041 0.42206490936932 0.21624485 0.14650893 prediction 0.478319619832082 Functional Loss - FBXO39 ENSG00000177294 CDS Human protein_coding chr17:6690667 chr17:6690669 synonymous SNV . 0 23 hm5C_associated_SNPs_69661 0 0 0 0 1 FBXO39 chr17:6690619 3'AG 6690619 Downstream 51bp
chr11 60105276 60105276 1 + C T SKCM 60105274 + 60105254 60105294 41 CTGCCCTGGTGGGTTTCATTCTCCTGTCTGTCAACCCGGCT CTGCCCTGGTGGGTTTCATTCTTCTGTCTGTCAACCCGGCT < 41bp 0.814824188028503 0.575668889508545 0.2400338 0.32861635 prediction 0.478310597039916 Functional Loss - MS4A6E ENSG00000166926 CDS Human protein_coding chr11:60105274 chr11:60105276 synonymous SNV . 0 23 hm5C_associated_SNPs_69663 0 0 0 0 1 MS4A6E chr11:60105214 3'AG 60105214 Downstream 63bp
chr16 20792416 20792416 1 + C T UCEC 20792414 + 20792394 20792434 41 AGGGAGCATGTGTATTCACACACCATTTACCCCGTTTTGAG AGGGAGCATGTGTATTCACACATCATTTACCCCGTTTTGAG < 41bp 0.844537369269535 0.605384932683627 0.07403457 0.15890431 prediction 0.478304873171816 Functional Loss - ACSM3 ENSG00000005187 CDS Human protein_coding chr16:20792414 chr16:20792416 synonymous SNV . 0 23 hm5C_associated_SNPs_69664 0 0 1 0 1 ACSM3 chr16:20792452 5'GT 20792452 Upstream 37bp
chr17 18001642 18001642 1 + C T PRAD 18001640 + 18001620 18001660 41 GAGGCAGCGTCCTATGAGTTCACCACTCTGACGTGTATTCC GAGGCAGCGTCCTATGAGTTCATCACTCTGACGTGTATTCC < 41bp 0.739152267649162 0.451179312668205 0.08459434 0.1359415 prediction 0.478304535298325 Functional Loss - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18001640 chr17:18001642 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_69665 0 0 1 0 2 DRG2 chr17:18001584 3'AG 18001584 Downstream 59bp
chr17 18001642 18001642 1 + C T PRAD 18001640 + 18001620 18001660 41 GAGGCAGCGTCCTATGAGTTCACCACTCTGACGTGTATTCC GAGGCAGCGTCCTATGAGTTCATCACTCTGACGTGTATTCC < 41bp 0.739152267649162 0.451179312668205 0.08459434 0.1359415 prediction 0.478304535298325 Functional Loss - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18001640 chr17:18001642 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_69665 0 0 1 0 2 DRG2 chr17:18001673 5'GT 18001673 Upstream 32bp
chr19 47879766 47879766 1 + G A rs137983157 47879763 + 47879743 47879783 41 CCTGCGTCTTCGCTGGCAGCCCCGAGGTGCTGCACGCACAG CCTGCGTCTTCGCTGGCAGCCCCAAGGTGCTGCACGCACAG < 41bp 0.752088638311111 0.512938541534341 0.176115 0.43487385 prediction 0.478300193553541 Functional Loss - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47879763 chr19:47879766 nonsynonymous SNV 0.137 1 24 hm5C_associated_SNPs_69666 0 0 1 0 2 DHX34 chr19:47879700 3'AG 47879700 Downstream 67bp
chr19 47879766 47879766 1 + G A rs137983157 47879763 + 47879743 47879783 41 CCTGCGTCTTCGCTGGCAGCCCCGAGGTGCTGCACGCACAG CCTGCGTCTTCGCTGGCAGCCCCAAGGTGCTGCACGCACAG < 41bp 0.752088638311111 0.512938541534341 0.176115 0.43487385 prediction 0.478300193553541 Functional Loss - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47879763 chr19:47879766 nonsynonymous SNV 0.137 1 24 hm5C_associated_SNPs_69666 0 0 1 0 2 DHX34 chr19:47879817 5'GT 47879817 Upstream 52bp
chr16 30485599 30485599 1 + C T UCEC 30485597 + 30485577 30485617 41 CCGGGAGGCACTTTGGATACCGCGTCCTGCAGGTCGGAAAC CCGGGAGGCACTTTGGATACCGTGTCCTGCAGGTCGGAAAC < 41bp 0.739139470443042 0.49275959276423 0.3630324 0.39153892 prediction 0.478278940886083 Functional Loss - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30485597 chr16:30485599 synonymous SNV . 0 23 hm5C_associated_SNPs_69674 0 0 0 0 3 ITGAL chr16:30485517 3'AG 30485517 Downstream 83bp
chr16 30485599 30485599 1 + C T UCEC 30485597 + 30485577 30485617 41 CCGGGAGGCACTTTGGATACCGCGTCCTGCAGGTCGGAAAC CCGGGAGGCACTTTGGATACCGTGTCCTGCAGGTCGGAAAC < 41bp 0.739139470443042 0.49275959276423 0.3630324 0.39153892 prediction 0.478278940886083 Functional Loss - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30485597 chr16:30485599 synonymous SNV . 0 23 hm5C_associated_SNPs_69674 0 0 0 0 3 ITGAL chr16:30485608 5'GT 30485608 Upstream 10bp
chr16 30485599 30485599 1 + C T UCEC 30485597 + 30485577 30485617 41 CCGGGAGGCACTTTGGATACCGCGTCCTGCAGGTCGGAAAC CCGGGAGGCACTTTGGATACCGTGTCCTGCAGGTCGGAAAC < 41bp 0.739139470443042 0.49275959276423 0.3630324 0.39153892 prediction 0.478278940886083 Functional Loss - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30485597 chr16:30485599 synonymous SNV . 0 23 hm5C_associated_SNPs_69674 0 0 0 0 3 ITGAL chr16:30485619 5'GT 30485619 Upstream 21bp
chr2 198400313 198400313 1 + T C UCEC 198400312 + 198400292 198400332 41 TGACAAAATTCTTGAACCACCTGAAGGCCAAGATGAAGGTG TGACAAAATTCTTGAACCACCCGAAGGCCAAGATGAAGGTG < 41bp 0.740725347654115 0.501587168372598 0.18050545 0.101962626 prediction 0.478276358563034 Functional Loss - HSPE1-MOB4;MOB4 ENSG00000115540;ENSG00000270757 CDS Human other chr2:198400312 chr2:198400313 synonymous SNV . 0 22 hm5C_associated_SNPs_69675 0 0 1 0 3 HSPE1-MOB4;MOB4 chr2:198400254 3'AG 198400254 Downstream 60bp
chr2 198400313 198400313 1 + T C UCEC 198400312 + 198400292 198400332 41 TGACAAAATTCTTGAACCACCTGAAGGCCAAGATGAAGGTG TGACAAAATTCTTGAACCACCCGAAGGCCAAGATGAAGGTG < 41bp 0.740725347654115 0.501587168372598 0.18050545 0.101962626 prediction 0.478276358563034 Functional Loss - HSPE1-MOB4;MOB4 ENSG00000115540;ENSG00000270757 CDS Human other chr2:198400312 chr2:198400313 synonymous SNV . 0 22 hm5C_associated_SNPs_69675 0 0 1 0 3 HSPE1-MOB4;MOB4 chr2:198400329 5'GT 198400329 Upstream 17bp
chr2 198400313 198400313 1 + T C UCEC 198400312 + 198400292 198400332 41 TGACAAAATTCTTGAACCACCTGAAGGCCAAGATGAAGGTG TGACAAAATTCTTGAACCACCCGAAGGCCAAGATGAAGGTG < 41bp 0.740725347654115 0.501587168372598 0.18050545 0.101962626 prediction 0.478276358563034 Functional Loss - HSPE1-MOB4;MOB4 ENSG00000115540;ENSG00000270757 CDS Human other chr2:198400312 chr2:198400313 synonymous SNV . 0 22 hm5C_associated_SNPs_69675 0 0 1 0 3 HSPE1-MOB4;MOB4 chr2:198400354 5'GT 198400354 Upstream 42bp
chr17 38345203 38345203 1 + C T UCEC 38345201 + 38345181 38345221 41 GATAGACTCCTGTCTGCAGACCCGGGTGGCCTTCCGGGGCT GATAGACTCCTGTCTGCAGACCTGGGTGGCCTTCCGGGGCT < 41bp 0.821313943329311 0.582176260630234 0.75301886 0.5337828 prediction 0.478275365398154 Functional Loss - RAPGEFL1 ENSG00000108352 CDS Human protein_coding chr17:38345201 chr17:38345203 nonsynonymous SNV 0.983 4 23 hm5C_associated_SNPs_69676 0 0 0 0 1 RAPGEFL1 chr17:38345118 3'AG 38345118 Downstream 86bp
chrX 149828945 149828945 1 + T C rs141358705 149828944 + 149828924 149828964 41 CTTATTCAACTGTGAATCTGCTCGAGAAAGACAGGTGAGTT CTTATTCAACTGTGAATCTGCCCGAGAAAGACAGGTGAGTT < 41bp 0.762451096610481 0.523315418922566 0.20600474 0.14031011 prediction 0.478271355375831 Functional Loss - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149828944 chrX:149828945 synonymous SNV . 0 22 hm5C_associated_SNPs_69677 0 0 0 0 1 MTM1 chrX:149828957 5'GT 149828957 Upstream 13bp
chr1 29630421 29630421 1 + C T rs559788899 29630419 + 29630399 29630439 41 AGCAGCCTCCTGGGGGGCTCCCCGAGGCGTCCCTGTGGCCG AGCAGCCTCCTGGGGGGCTCCCTGAGGCGTCCCTGTGGCCG < 41bp 0.810642919861242 0.571508504655443 0.7954494 0.35276496 prediction 0.478268830411597 Functional Loss - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29630419 chr1:29630421 nonsynonymous SNV 0.079 2 23 hm5C_associated_SNPs_69679 0 0 1 0 1 PTPRU chr1:29630367 3'AG 29630367 Downstream 55bp
chr4 184828068 184828068 1 + C T CESC 184828066 + 184828046 184828086 41 CGCCTGCACAAGCGTTTCCCCGCGGCCTTCGCGCCCCAGGC CGCCTGCACAAGCGTTTCCCCGTGGCCTTCGCGCCCCAGGC < 41bp 0.739133414685094 0.492765798541794 0.8905293 0.8502058 prediction 0.478266829370187 Functional Loss - STOX2 ENSG00000173320 CDS Human protein_coding chr4:184828066 chr4:184828068 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_69680 0 0 0 0 1 STOX2 chr4:184828109 5'GT 184828109 Upstream 42bp
chr11 114278242 114278242 1 + C T SKCM 114278240 + 114278220 114278260 41 TCTGGATCAATCAGGATTTTCACCATCAGTTCAATCACACA TCTGGATCAATCAGGATTTTCATCATCAGTTCAATCACACA < 41bp 0.820707863005479 0.581580208749051 0.24364635 0.040714085 prediction 0.478255308512857 Functional Loss - RBM7 ENSG00000076053 CDS Human protein_coding chr11:114278240 chr11:114278242 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_69684 0 0 0 0 1 RBM7 chr11:114278167 3'AG 114278167 Downstream 76bp
chr3 150780759 150780759 1 + G T SARC 150780757 + 150780737 150780777 41 GAGAATGGAGATTGAGCAACCAGGAAGCAGTCTCAGCCACA GAGAATGGAGATTGAGCAACCATGAAGCAGTCTCAGCCACA < 41bp 0.739122619765809 0.425236544237021 0.8607737 0.18524301 prediction 0.478245239531619 Functional Loss - CLRN1-AS1 ENSG00000239265 ncRNA_exonic Human antisense chr3:150780757 chr3:150780759 . . 0 23 hm5C_associated_SNPs_69687 0 0 0 0 2 CLRN1-AS1 chr3:150780713 3'AG 150780713 Downstream 47bp
chr3 150780759 150780759 1 + G T SARC 150780757 + 150780737 150780777 41 GAGAATGGAGATTGAGCAACCAGGAAGCAGTCTCAGCCACA GAGAATGGAGATTGAGCAACCATGAAGCAGTCTCAGCCACA < 41bp 0.739122619765809 0.425236544237021 0.8607737 0.18524301 prediction 0.478245239531619 Functional Loss - CLRN1-AS1 ENSG00000239265 ncRNA_exonic Human antisense chr3:150780757 chr3:150780759 . . 0 23 hm5C_associated_SNPs_69687 0 0 0 0 2 CLRN1-AS1 chr3:150780790 5'GT 150780790 Upstream 32bp
chr1 228335240 228335240 1 + G A GBM 228335237 + 228335217 228335257 41 CTGTGCAGCCGCCTTCACTGCACGTGCTGGTGTGTGCTGGG CTGTGCAGCCGCCTTCACTGCACATGCTGGTGTGTGCTGGG < 41bp 0.739112778294725 0.494631324006105 0.19474438 0.097109914 prediction 0.47822555658945 Functional Loss - GUK1 ENSG00000143774 CDS Human protein_coding chr1:228335237 chr1:228335240 nonsynonymous SNV 0.128 1 24 hm5C_associated_SNPs_69689 0 0 1 0 1 GUK1 chr1:228335245 5'GT 228335245 Upstream 6bp
chr11 113856742 113856742 1 + G A UCEC 113856739 + 113856719 113856759 41 TGCTTTATTCTCTCTCAGTCCAGGACATCAACATCTCTTTG TGCTTTATTCTCTCTCAGTCCAGAACATCAACATCTCTTTG < 41bp 0.73909880258257 0.497414648271098 0.13351908 0.17744526 prediction 0.478197605165139 Functional Loss - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113856739 chr11:113856742 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_69696 0 0 0 0 1 HTR3A chr11:113856737 3'AG 113856737 Downstream 6bp
chr12 120106160 120106160 1 + G A BLCA 120106157 + 120106137 120106177 41 GACGGGGACAGGCCCAAGATCCTGATGGACAGCCCCGAAGA GACGGGGACAGGCCCAAGATCCTAATGGACAGCCCCGAAGA < 41bp 0.755242113573156 0.516153912130003 0.12301114 0.06899729 prediction 0.478176402886305 Functional Loss - PRKAB1 ENSG00000111725 CDS Human protein_coding chr12:120106157 chr12:120106160 synonymous SNV . 0 24 hm5C_associated_SNPs_69703 0 0 0 0 1 PRKAB1 chr12:120106208 5'GT 120106208 Upstream 49bp
chr17 38510573 38510573 1 + G A UCEC 38510570 + 38510550 38510590 41 CCAGATCCTGCGGATCTGCACGCGGTACACGCCCGAGCAGG CCAGATCCTGCGGATCTGCACGCAGTACACGCCCGAGCAGG < 41bp 0.764983577484525 0.525897971605407 0.4879243 0.098810166 prediction 0.478171211758237 Functional Loss - RARA ENSG00000131759 CDS Human protein_coding chr17:38510570 chr17:38510573 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_69704 0 0 1 0 1 RARA chr17:38510554 3'AG 38510554 Downstream 20bp
chr11 1908064 1908064 1 + G A UCEC 1908061 + 1908041 1908081 41 GGTGGGAGACGGGTGAGGTACAGGCTCAGTCTGCGGCCAAG GGTGGGAGACGGGTGAGGTACAGACTCAGTCTGCGGCCAAG < 41bp 0.771019183843642 0.531936938022887 0.7993951 0.27097273 prediction 0.47816449164151 Functional Loss - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1908061 chr11:1908064 nonsynonymous SNV 0.871 0 24 hm5C_associated_SNPs_69706 0 0 0 0 1 LSP1 chr11:1908096 5'GT 1908096 Upstream 33bp
chr10 88421070 88421070 1 + C T rs370996195 88421068 + 88421048 88421088 41 GTCCTGACACCCTACATGAGCTCGGTGCCAGCCGTCATCGC GTCCTGACACCCTACATGAGCTTGGTGCCAGCCGTCATCGC < 41bp 0.810586454191867 0.571505525824514 0.11342281 0.10292265 prediction 0.478161856734706 Functional Loss - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88421068 chr10:88421070 nonsynonymous SNV 0.940 3 23 hm5C_associated_SNPs_69708 0 0 0 0 2 OPN4 chr10:88421038 3'AG 88421038 Downstream 33bp
chr10 88421070 88421070 1 + C T rs370996195 88421068 + 88421048 88421088 41 GTCCTGACACCCTACATGAGCTCGGTGCCAGCCGTCATCGC GTCCTGACACCCTACATGAGCTTGGTGCCAGCCGTCATCGC < 41bp 0.810586454191867 0.571505525824514 0.11342281 0.10292265 prediction 0.478161856734706 Functional Loss - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88421068 chr10:88421070 nonsynonymous SNV 0.940 3 23 hm5C_associated_SNPs_69708 0 0 0 0 2 OPN4 chr10:88421145 5'GT 88421145 Upstream 76bp
chr22 50636357 50636357 1 + C T STAD 50636355 + 50636335 50636375 41 ACCGCACCATCGTCTCGGAGCGCGACGTCTACCTAACCTAC ACCGCACCATCGTCTCGGAGCGTGACGTCTACCTAACCTAC < 41bp 0.801124624180332 0.562044308616317 0.21373138 0.28005606 prediction 0.47816063112803 Functional Loss - TRABD ENSG00000170638 CDS Human protein_coding chr22:50636355 chr22:50636357 synonymous SNV . 0 23 hm5C_associated_SNPs_69709 0 0 1 0 1 TRABD chr22:50636424 5'GT 50636424 Upstream 68bp
chr12 49315025 49315025 1 + C T LAML 49315023 + 49315003 49315043 41 TGAAACTGGAGCAACTGAGCCTCCAACATAGACGAGCCCAG TGAAACTGGAGCAACTGAGCCTTCAACATAGACGAGCCCAG < 41bp 0.739079787460904 0.448094840016195 0.9444379 0.4409319 prediction 0.478159574921808 Functional Loss - CCDC65 ENSG00000139537 CDS Human protein_coding chr12:49315023 chr12:49315025 synonymous SNV . 0 23 hm5C_associated_SNPs_69710 0 0 0 0 1 CCDC65 chr12:49314951 3'AG 49314951 Downstream 75bp
chr16 28898537 28898537 1 + C T rs147341039 28898535 + 28898515 28898555 41 TCTGTATCTGTCATCAAACACACGGAGCCCGTTCCTGACCC TCTGTATCTGTCATCAAACACATGGAGCCCGTTCCTGACCC < 41bp 0.820151976756221 0.581072533895981 0.36450785 0.41676965 prediction 0.478158885720479 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28898535 chr16:28898537 nonsynonymous SNV 0.738 4 23 hm5C_associated_SNPs_69711 0 0 0 0 2 ATP2A1 chr16:28898510 3'AG 28898510 Downstream 28bp
chr16 28898537 28898537 1 + C T rs147341039 28898535 + 28898515 28898555 41 TCTGTATCTGTCATCAAACACACGGAGCCCGTTCCTGACCC TCTGTATCTGTCATCAAACACATGGAGCCCGTTCCTGACCC < 41bp 0.820151976756221 0.581072533895981 0.36450785 0.41676965 prediction 0.478158885720479 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28898535 chr16:28898537 nonsynonymous SNV 0.738 4 23 hm5C_associated_SNPs_69711 0 0 0 0 2 ATP2A1 chr16:28898595 5'GT 28898595 Upstream 59bp
chr8 145066090 145066090 1 + G A LUSC 145066087 + 145066067 145066107 41 CAGCTGTCGGTGACCCTGTCCACGGTGTCTGTGTTCACTTT CAGCTGTCGGTGACCCTGTCCACAGTGTCTGTGTTCACTTT < 41bp 0.739069919434269 0.494021995670427 0.21802375 0.04732302 prediction 0.478139838868538 Functional Loss - GRINA ENSG00000178719 CDS Human protein_coding chr8:145066087 chr8:145066090 synonymous SNV . 0 24 hm5C_associated_SNPs_69718 0 0 1 0 1 GRINA chr8:145066046 3'AG 145066046 Downstream 45bp
chr8 145066089 145066089 1 + C T UCEC 145066087 + 145066067 145066107 41 CAGCTGTCGGTGACCCTGTCCACGGTGTCTGTGTTCACTTT CAGCTGTCGGTGACCCTGTCCATGGTGTCTGTGTTCACTTT < 41bp 0.739069919434269 0.467884310152227 0.21802375 0.10212439 prediction 0.478139838868538 Functional Loss - GRINA ENSG00000178719 CDS Human protein_coding chr8:145066087 chr8:145066089 nonsynonymous SNV 0.994 1 23 hm5C_associated_SNPs_69719 0 0 1 0 1 GRINA chr8:145066046 3'AG 145066046 Downstream 44bp
chr14 95110002 95110002 1 + G T LUAD 95109999 + 95109979 95110019 41 ACCTTCTTCATCTTCCCCAACAGGGGCAAGATGAGGCAGCT ACCTTCTTCATCTTCCCCAACAGTGGCAAGATGAGGCAGCT < 41bp 0.739068924912259 0.361859955317813 0.8954439 0.25301892 prediction 0.478137849824517 Functional Loss - SERPINA13P ENSG00000187483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr14:95109999 chr14:95110002 . . 0 24 hm5C_associated_SNPs_69720 0 0 0 0 1 SERPINA13P chr14:95110076 5'GT 95110076 Upstream 75bp
chr19 16790828 16790828 1 + C T COAD 16790826 + 16790806 16790846 41 CTGTCCCGGCGCCACCCCATCGCGTCCTGGCTGTGCGCCAT CTGTCCCGGCGCCACCCCATCGTGTCCTGGCTGTGCGCCAT < 41bp 0.808825278932111 0.569766235647918 0.5036386 0.4970013 prediction 0.478118086568386 Functional Loss - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16790826 chr19:16790828 nonsynonymous SNV 0.089 3 23 hm5C_associated_SNPs_69722 0 0 1 0 1 TMEM38A chr19:16790795 3'AG 16790795 Downstream 34bp
chr5 34850335 34850335 1 + C T COAD 34850333 + 34850313 34850353 41 GATTCGATGTGTCATCCTTTCTCGGATTATTTTTGGGGACC GATTCGATGTGTCATCCTTTCTTGGATTATTTTTGGGGACC < 41bp 0.739058896113472 0.476519673889084 0.321324 0.1993849 prediction 0.478117792226943 Functional Loss - TTC23L ENSG00000205838 CDS Human protein_coding chr5:34850333 chr5:34850335 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_69723 0 0 0 0 2 TTC23L chr5:34850290 3'AG 34850290 Downstream 46bp
chr5 34850335 34850335 1 + C T COAD 34850333 + 34850313 34850353 41 GATTCGATGTGTCATCCTTTCTCGGATTATTTTTGGGGACC GATTCGATGTGTCATCCTTTCTTGGATTATTTTTGGGGACC < 41bp 0.739058896113472 0.476519673889084 0.321324 0.1993849 prediction 0.478117792226943 Functional Loss - TTC23L ENSG00000205838 CDS Human protein_coding chr5:34850333 chr5:34850335 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_69723 0 0 0 0 2 TTC23L chr5:34850413 5'GT 34850413 Upstream 79bp
chr16 70180077 70180077 1 + T C KIRC 70180076 + 70180056 70180096 41 TCGAGCTGTGGATGTGCTGTCTGAGTTGTCCTATGCCCCTA TCGAGCTGTGGATGTGCTGTCCGAGTTGTCCTATGCCCCTA < 41bp 0.753448379887061 0.514392355714961 0.8479062 0.9274684 prediction 0.4781120483442 Functional Loss - PDPR ENSG00000090857 CDS Human protein_coding chr16:70180076 chr16:70180077 synonymous SNV . 0 22 hm5C_associated_SNPs_69725 0 0 0 0 2 PDPR chr16:70180037 3'AG 70180037 Downstream 41bp
chr16 70180077 70180077 1 + T C KIRC 70180076 + 70180056 70180096 41 TCGAGCTGTGGATGTGCTGTCTGAGTTGTCCTATGCCCCTA TCGAGCTGTGGATGTGCTGTCCGAGTTGTCCTATGCCCCTA < 41bp 0.753448379887061 0.514392355714961 0.8479062 0.9274684 prediction 0.4781120483442 Functional Loss - PDPR ENSG00000090857 CDS Human protein_coding chr16:70180076 chr16:70180077 synonymous SNV . 0 22 hm5C_associated_SNPs_69725 0 0 0 0 2 PDPR chr16:70180131 5'GT 70180131 Upstream 55bp
chr17 41924585 41924585 1 + A C COAD 41924581 + 41924561 41924601 41 CTCCCACGGTGTCCAGCGCCCAGAATGCGGCTTCTGGTCCT CTCCCACGGTGTCCAGCGCCCAGACTGCGGCTTCTGGTCCT < 41bp 0.795559788338812 0.556503939686236 0.7796186 0.4180646 prediction 0.478111697305152 Functional Loss - CD300LG ENSG00000161649 CDS Human protein_coding chr17:41924581 chr17:41924585 nonsynonymous SNV 0.062 4 25 hm5C_associated_SNPs_69726 0 0 0 0 1 CD300LG chr17:41924627 5'GT 41924627 Upstream 43bp
chr5 148596572 148596572 1 + C T UCEC 148596570 + 148596550 148596590 41 GTGCCAGGTGTGTACGCTGCCACCAGATGTTCACCGAAGGA GTGCCAGGTGTGTACGCTGCCATCAGATGTTCACCGAAGGA < 41bp 0.739039496304196 0.443352731519776 0.32530385 0.26595238 prediction 0.478078992608392 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148596570 chr5:148596572 synonymous SNV . 0 23 hm5C_associated_SNPs_69730 0 0 0 0 2 ABLIM3 chr5:148596522 3'AG 148596522 Downstream 51bp
chr5 148596572 148596572 1 + C T UCEC 148596570 + 148596550 148596590 41 GTGCCAGGTGTGTACGCTGCCACCAGATGTTCACCGAAGGA GTGCCAGGTGTGTACGCTGCCATCAGATGTTCACCGAAGGA < 41bp 0.739039496304196 0.443352731519776 0.32530385 0.26595238 prediction 0.478078992608392 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148596570 chr5:148596572 synonymous SNV . 0 23 hm5C_associated_SNPs_69730 0 0 0 0 2 ABLIM3 chr5:148596609 5'GT 148596609 Upstream 38bp
chr18 163367 163367 1 + C T SKCM 163365 + 163345 163385 41 AGAATTGAATACAGATGAACCTCCAATGGTATTCAAGGCTC AGAATTGAATACAGATGAACCTTCAATGGTATTCAAGGCTC < 41bp 0.853336439152212 0.614297602807698 0.95429647 0.37803173 prediction 0.478077672689027 Functional Loss - USP14 ENSG00000101557 CDS Human protein_coding chr18:163365 chr18:163367 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_69731 0 0 1 0 2 USP14 chr18:163308 3'AG 163308 Downstream 60bp
chr18 163367 163367 1 + C T SKCM 163365 + 163345 163385 41 AGAATTGAATACAGATGAACCTCCAATGGTATTCAAGGCTC AGAATTGAATACAGATGAACCTTCAATGGTATTCAAGGCTC < 41bp 0.853336439152212 0.614297602807698 0.95429647 0.37803173 prediction 0.478077672689027 Functional Loss - USP14 ENSG00000101557 CDS Human protein_coding chr18:163365 chr18:163367 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_69731 0 0 1 0 2 USP14 chr18:163453 5'GT 163453 Upstream 87bp
chr8 38965324 38965324 1 + G A rs61753546 38965321 + 38965301 38965341 41 CGCCTCTGGTTGCTGCTGGCCGGGCTCTGCGGCCTCCTGGC CGCCTCTGGTTGCTGCTGGCCGGACTCTGCGGCCTCCTGGC < 41bp 0.765864840127263 0.526831729053971 0.9167764 0.6142995 prediction 0.478066222146585 Functional Loss - ADAM32 ENSG00000197140 CDS Human protein_coding chr8:38965321 chr8:38965324 nonsynonymous SNV 0.006 2 24 hm5C_associated_SNPs_69733 0 0 0 0 1 ADAM32 chr8:38965352 5'GT 38965352 Upstream 29bp
chr9 90499848 90499848 1 + G T LUAD 90499845 + 90499825 90499865 41 CAGCCACCTGAGGAAGCTCGCTGGCGAAGGCAGCTCCCACC CAGCCACCTGAGGAAGCTCGCTGTCGAAGGCAGCTCCCACC < 41bp 0.739032601134952 0.340010544239175 0.5869436 0.080438316 prediction 0.478065202269904 Functional Loss - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90499845 chr9:90499848 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_69735 0 0 0 0 1 SPATA31E1 chr9:90499828 3'AG 90499828 Downstream 21bp
chr6 26451927 26451927 1 + C T BLCA 26451925 + 26451905 26451945 41 GATGTGATTCTGGATCCAGACACGGCAAACGCCATCCTCCT GATGTGATTCTGGATCCAGACATGGCAAACGCCATCCTCCT < 41bp 0.796347871715795 0.557315844000189 0.09214944 0.12204093 prediction 0.478064055431212 Functional Loss - BTN3A3 ENSG00000111801 CDS Human protein_coding chr6:26451925 chr6:26451927 nonsynonymous SNV 0.013 3 23 hm5C_associated_SNPs_69736 0 0 0 0 1 BTN3A3 chr6:26451903 3'AG 26451903 Downstream 25bp
chr21 47412687 47412687 1 + G A rs151158105 47412684 + 47412664 47412704 41 TGGCCCTGGAGAGAGAGGACCACGGGGGACCCCAGGCACGC TGGCCCTGGAGAGAGAGGACCACAGGGGACCCCAGGCACGC < 41bp 0.767632389745295 0.528604929438698 0.32921544 0.11254758 prediction 0.478054920613193 Functional Loss - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47412684 chr21:47412687 nonsynonymous SNV 0.832 1 24 hm5C_associated_SNPs_69737 2 0 1 0 1 COL6A1 chr21:47412724 5'GT 47412724 Upstream 38bp
chr14 73422283 73422283 1 + T C GBM 73422282 + 73422262 73422302 41 GGGAAATCTTTGCCATTGATCTGCGTTGTGGAAATCAAGGC GGGAAATCTTTGCCATTGATCCGCGTTGTGGAAATCAAGGC < 41bp 0.771668534434038 0.532643960563581 0.4890648 0.88957906 prediction 0.478049147740914 Functional Loss - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73422282 chr14:73422283 nonsynonymous SNV 0.984 3 22 hm5C_associated_SNPs_69738 0 0 0 0 1 DCAF4 chr14:73422231 3'AG 73422231 Downstream 53bp
chr15 80762703 80762703 1 + G T COAD 80762700 + 80762680 80762720 41 CTCCGCATGGCCGTCTCGCACATGAAGTCCATGAGGGGTAC CTCCGCATGGCCGTCTCGCACATTAAGTCCATGAGGGGTAC < 41bp 0.739011795606281 0.34146598742042 0.23507181 0.065662265 prediction 0.478023591212562 Functional Loss - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80762700 chr15:80762703 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_69742 0 0 0 0 1 ARNT2 chr15:80762772 5'GT 80762772 Upstream 70bp
chr9 6241737 6241737 1 + G T UCEC 6241735 + 6241715 6241755 41 TTCAACCAACAAAATTTCCACAGCAAAGTGGAAGAACACAG TTCAACCAACAAAATTTCCACATCAAAGTGGAAGAACACAG < 41bp 0.739008891832227 0.42350963840224 0.06356409 0.045063883 prediction 0.478017783664454 Functional Loss - IL33 ENSG00000137033 CDS Human protein_coding chr9:6241735 chr9:6241737 nonsynonymous SNV 0.004 1 23 hm5C_associated_SNPs_69744 0 0 0 0 1 IL33 chr9:6241785 5'GT 6241785 Upstream 49bp
chr1 1420434 1420434 1 + A C rs150536426 1420433 + 1420413 1420453 41 GCTGGCTGTCGGGGTCTACTCAGCCAAGAATGCGACAGCCG GCTGGCTGTCGGGGTCTACTCCGCCAAGAATGCGACAGCCG < 41bp 0.771418428090409 0.532409740568223 0.8517492 0.8563216 prediction 0.478017375044372 Functional Loss - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1420433 chr1:1420434 synonymous SNV . 0 22 hm5C_associated_SNPs_69746 0 0 1 0 1 ATAD3B chr1:1420396 3'AG 1420396 Downstream 39bp
chr7 150163848 150163848 1 + C T CESC 150163846 + 150163826 150163866 41 CTCCTCCTGGGAAAATGCCGCTCGGGAAAAAGTGCCACAGG CTCCTCCTGGGAAAATGCCGCTTGGGAAAAAGTGCCACAGG < 41bp 0.801714450122101 0.562720216103567 0.105000466 0.10016438 prediction 0.477988468037068 Functional Loss - GIMAP8 ENSG00000171115 CDS Human protein_coding chr7:150163846 chr7:150163848 nonsynonymous SNV 0.018 1 23 hm5C_associated_SNPs_69751 0 0 0 0 1 GIMAP8 chr7:150163759 3'AG 150163759 Downstream 90bp
chr15 74467238 74467238 1 + G A SKCM 74467235 + 74467215 74467255 41 CTGCTCTGGTGGGCGCTTCTCCTGGGCCTGGCTCAGGCCTG CTGCTCTGGTGGGCGCTTCTCCTAGGCCTGGCTCAGGCCTG < 41bp 0.765260451637723 0.526268102152035 0.9090322 0.85270965 prediction 0.477984698971376 Functional Loss - ISLR ENSG00000129009 CDS Human antisense chr15:74467235 chr15:74467238 synonymous SNV . 0 24 hm5C_associated_SNPs_69752 0 0 0 0 1 ISLR chr15:74467192 3'AG 74467192 Downstream 47bp
chr11 66258843 66258843 1 + G T LUAD 66258840 + 66258820 66258860 41 TCCAGAAGGTGGTGGAGCAGCTGGAGAAAGCCAAGGTTGGA TCCAGAAGGTGGTGGAGCAGCTGTAGAAAGCCAAGGTTGGA < 41bp 0.918155292260718 0.679165168050439 0.48674786 0.31707782 prediction 0.477980248420558 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66258840 chr11:66258843 stopgain 1.000 1 24 hm5C_associated_SNPs_69753 0 0 1 0 1 DPP3 chr11:66258854 5'GT 66258854 Upstream 12bp
chr16 55360448 55360448 1 + G T LUAD 55360445 + 55360425 55360465 41 TATGCGGCCGCTGCAGCTGCCCAGAGCTACCCTGGCTACCT TATGCGGCCGCTGCAGCTGCCCATAGCTACCCTGGCTACCT < 41bp 0.738987264809802 0.340015291784238 0.82029414 0.26622513 prediction 0.477974529619604 Functional Loss - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55360445 chr16:55360448 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_69755 0 0 0 2 1 IRX6 chr16:55360505 5'GT 55360505 Upstream 58bp
chr7 2418396 2418396 1 + T C LIHC 2418395 + 2418375 2418415 41 CGTTTGAGTCAGTCCAAAGCCTCAAAGGTGAGCCTCATTCC CGTTTGAGTCAGTCCAAAGCCCCAAAGGTGAGCCTCATTCC < 41bp 0.738981040310065 0.470294536196307 0.12987429 0.07568279 prediction 0.47796208062013 Functional Loss - EIF3B ENSG00000106263 CDS Human protein_coding chr7:2418395 chr7:2418396 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_69757 0 0 1 0 2 EIF3B chr7:2418324 3'AG 2418324 Downstream 73bp
chr7 2418396 2418396 1 + T C LIHC 2418395 + 2418375 2418415 41 CGTTTGAGTCAGTCCAAAGCCTCAAAGGTGAGCCTCATTCC CGTTTGAGTCAGTCCAAAGCCCCAAAGGTGAGCCTCATTCC < 41bp 0.738981040310065 0.470294536196307 0.12987429 0.07568279 prediction 0.47796208062013 Functional Loss - EIF3B ENSG00000106263 CDS Human protein_coding chr7:2418395 chr7:2418396 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_69757 0 0 1 0 2 EIF3B chr7:2418401 5'GT 2418401 Upstream 6bp
chr19 49464862 49464862 1 + C T ESCA 49464860 + 49464840 49464880 41 TTTGTGGCGGGAGTGCTCACCGCCTCACTCACCATCTGGAA TTTGTGGCGGGAGTGCTCACCGTCTCACTCACCATCTGGAA < 41bp 0.738979747121952 0.493181884686916 0.1488955 0.06815797 prediction 0.477959494243904 Functional Loss - BAX ENSG00000087088 CDS Human protein_coding chr19:49464860 chr19:49464862 nonsynonymous SNV 0.977 0 23 hm5C_associated_SNPs_69758 0 0 1 0 2 BAX chr19:49464789 3'AG 49464789 Downstream 74bp
chr19 49464862 49464862 1 + C T ESCA 49464860 + 49464840 49464880 41 TTTGTGGCGGGAGTGCTCACCGCCTCACTCACCATCTGGAA TTTGTGGCGGGAGTGCTCACCGTCTCACTCACCATCTGGAA < 41bp 0.738979747121952 0.493181884686916 0.1488955 0.06815797 prediction 0.477959494243904 Functional Loss - BAX ENSG00000087088 CDS Human protein_coding chr19:49464860 chr19:49464862 nonsynonymous SNV 0.977 0 23 hm5C_associated_SNPs_69758 0 0 1 0 2 BAX chr19:49464828 3'AG 49464828 Downstream 35bp
chr1 196749043 196749043 1 + C T LUAD 196749041 + 196749021 196749061 41 TGGCTACGGTCTTCCAAAAGCGCAGACCACAGTTACATGTA TGGCTACGGTCTTCCAAAAGCGTAGACCACAGTTACATGTA < 41bp 0.780703308858677 0.541723695534396 0.1994498 0.18340692 prediction 0.477959226648561 Functional Loss - CFHR3 ENSG00000116785 CDS Human protein_coding chr1:196749041 chr1:196749043 stopgain 0.003 0 23 hm5C_associated_SNPs_69759 0 0 0 0 1 CFHR3 chr1:196749103 5'GT 196749103 Upstream 61bp
chr19 46664088 46664088 1 + G T LUAD 46664086 + 46664066 46664106 41 TTGTTGTGAAGCTGAAGGTTCAGGGTGTGAATTCCCAGTGC TTGTTGTGAAGCTGAAGGTTCATGGTGTGAATTCCCAGTGC < 41bp 0.892484227395042 0.653505475691842 0.89737695 0.39501965 prediction 0.4779575034064 Functional Loss - IGFL2 ENSG00000204866 CDS Human protein_coding chr19:46664086 chr19:46664088 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_69761 0 0 0 0 1 IGFL2 chr19:46664138 5'GT 46664138 Upstream 51bp
chr3 97486989 97486989 1 + T C SKCM 97486988 + 97486968 97487008 41 GACTTTCAGTCTTGCTTGGCCTGAAGAAGAAGGAGGTTCAT GACTTTCAGTCTTGCTTGGCCCGAAGAAGAAGGAGGTTCAT < 41bp 0.739026379252188 0.500052015393617 0.22331512 0.14295527 prediction 0.477948727717142 Functional Loss - ARL6 ENSG00000113966 CDS Human protein_coding chr3:97486988 chr3:97486989 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_69762 0 0 0 0 2 ARL6 chr3:97486925 3'AG 97486925 Downstream 65bp
chr3 97486989 97486989 1 + T C SKCM 97486988 + 97486968 97487008 41 GACTTTCAGTCTTGCTTGGCCTGAAGAAGAAGGAGGTTCAT GACTTTCAGTCTTGCTTGGCCCGAAGAAGAAGGAGGTTCAT < 41bp 0.739026379252188 0.500052015393617 0.22331512 0.14295527 prediction 0.477948727717142 Functional Loss - ARL6 ENSG00000113966 CDS Human protein_coding chr3:97486988 chr3:97486989 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_69762 0 0 0 0 2 ARL6 chr3:97487074 5'GT 97487074 Upstream 86bp
chr5 138163381 138163381 1 + G A BLCA 138163378 + 138163358 138163398 41 ATGCTGTCCGCCAGGCCCTGCAGGACCTGCTTTCGGAGTAC ATGCTGTCCGCCAGGCCCTGCAGAACCTGCTTTCGGAGTAC < 41bp 0.763972369056974 0.52499961981638 0.38849044 0.14752105 prediction 0.477945498481189 Functional Loss - CTNNA1 ENSG00000044115 CDS Human protein_coding chr5:138163378 chr5:138163381 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_69763 0 0 1 0 1 CTNNA1 chr5:138163407 5'GT 138163407 Upstream 27bp
chr7 76062301 76062301 1 + G A BLCA 76062298 + 76062278 76062318 41 ACCTGGTTGCCCTTCAGGACCACGGTGTTCTCAGAGGAGAA ACCTGGTTGCCCTTCAGGACCACAGTGTTCTCAGAGGAGAA < 41bp 0.764162796496852 0.525196162084745 0.052841097 0.08619586 prediction 0.477933268824214 Functional Loss - ZP3 ENSG00000188372 CDS Human protein_coding chr7:76062298 chr7:76062301 synonymous SNV . 0 24 hm5C_associated_SNPs_69766 0 0 0 0 1 ZP3 chr7:76062244 3'AG 76062244 Downstream 58bp
chr7 5336793 5336793 1 + C T rs139639257 5336791 + 5336771 5336811 41 TGGGCAGGGGCTATGGCTACCGCGTGCACCACGACGTTGTC TGGGCAGGGGCTATGGCTACCGTGTGCACCACGACGTTGTC < 41bp 0.751546808973829 0.512584920565887 0.7610595 0.7916351 prediction 0.477923776815884 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5336791 chr7:5336793 synonymous SNV . 0 23 hm5C_associated_SNPs_69767 0 0 0 0 1 SLC29A4 chr7:5336829 5'GT 5336829 Upstream 37bp
chr6 30615027 30615027 1 + G T LUSC 30615024 + 30615004 30615044 41 AGATCATGTACCAGCCCAGCCGGGGTGCGGCCCGGCGTCTC AGATCATGTACCAGCCCAGCCGGTGTGCGGCCCGGCGTCTC < 41bp 0.877945005493638 0.638986653278514 0.92210895 0.60219043 prediction 0.477916704430248 Functional Loss - C6orf136 ENSG00000204564 CDS Human protein_coding chr6:30615024 chr6:30615027 nonsynonymous SNV 0.983 2 24 hm5C_associated_SNPs_69768 0 0 1 0 1 C6orf136 chr6:30615080 5'GT 30615080 Upstream 54bp
chr1 226026400 226026400 1 + C T BLCA 226026398 + 226026378 226026418 41 GTGAAGCCCCCCCAGCTGCCCGCAGGCCATACCCCGAAGCC GTGAAGCCCCCCCAGCTGCCCGTAGGCCATACCCCGAAGCC < 41bp 0.738957319469236 0.478867886998065 0.0991849 0.11336592 prediction 0.477914638938471 Functional Loss - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226026398 chr1:226026400 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_69769 0 0 1 0 1 EPHX1 chr1:226026355 3'AG 226026355 Downstream 46bp
chr14 94582821 94582821 1 + C T rs2227974 94582819 + 94582799 94582839 41 TTGACCAAGTTCATCCTGGGCTCCATTGGGTCTGCCATTGC TTGACCAAGTTCATCCTGGGCTTCATTGGGTCTGCCATTGC < 41bp 0.815205245369582 0.57625230748813 0.89872944 0.14454493 prediction 0.477905875762905 Functional Loss - IFI27 ENSG00000165949 CDS Human protein_coding chr14:94582819 chr14:94582821 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_69771 0 0 1 0 1 IFI27 chr14:94582779 3'AG 94582779 Downstream 43bp
chr8 145134986 145134986 1 + C T LUSC 145134984 + 145134964 145135004 41 GTGAGATGGGCCTGCAGCTCCGCCAGACTTTCGAAGCAGCC GTGAGATGGGCCTGCAGCTCCGTCAGACTTTCGAAGCAGCC < 41bp 0.825709103095571 0.586757359983146 0.3661878 0.1516532 prediction 0.477903486224849 Functional Loss - EXOSC4 ENSG00000178896 CDS Human protein_coding chr8:145134984 chr8:145134986 synonymous SNV . 0 23 hm5C_associated_SNPs_69772 0 0 1 0 1 EXOSC4 chr8:145135052 5'GT 145135052 Upstream 67bp
chr9 37503059 37503059 1 + G C COAD 37503055 + 37503035 37503075 41 CTTAGGATGATGGAGATAGCCAAAGCCATGAGGCTGAAGAT CTTAGGATGATGGAGATAGCCAAACCCATGAGGCTGAAGAT < 41bp 0.738940851242247 0.454311680936344 0.66262025 0.36104327 prediction 0.477881702484494 Functional Loss - POLR1E ENSG00000137054 CDS Human protein_coding chr9:37503055 chr9:37503059 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_69778 0 0 1 0 1 POLR1E chr9:37503040 3'AG 37503040 Downstream 20bp
chr17 38609323 38609323 1 + A C UCEC 38609319 + 38609299 38609339 41 TGCCTGCAGAAGCACTTCGCCAAAATTCGAGACCGGAGCAC TGCCTGCAGAAGCACTTCGCCAAACTTCGAGACCGGAGCAC < 41bp 0.738940490807235 0.319375588954471 0.14934805 0.30189645 prediction 0.477880981614471 Functional Loss - IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38609319 chr17:38609323 nonsynonymous SNV 0.966 0 25 hm5C_associated_SNPs_69779 0 0 1 0 2 IGFBP4 chr17:38609237 3'AG 38609237 Downstream 87bp
chr17 38609323 38609323 1 + A C UCEC 38609319 + 38609299 38609339 41 TGCCTGCAGAAGCACTTCGCCAAAATTCGAGACCGGAGCAC TGCCTGCAGAAGCACTTCGCCAAACTTCGAGACCGGAGCAC < 41bp 0.738940490807235 0.319375588954471 0.14934805 0.30189645 prediction 0.477880981614471 Functional Loss - IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38609319 chr17:38609323 nonsynonymous SNV 0.966 0 25 hm5C_associated_SNPs_69779 0 0 1 0 2 IGFBP4 chr17:38609394 5'GT 38609394 Upstream 72bp
chr3 136701098 136701098 1 + G A STAD 136701095 + 136701075 136701115 41 TGTGATGTCACTGATGACATCACGGCCACTGTGCCATACAA TGTGATGTCACTGATGACATCACAGCCACTGTGCCATACAA < 41bp 0.738938640270291 0.493910182341306 0.17279142 0.11082727 prediction 0.477877280540583 Functional Loss - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136701095 chr3:136701098 synonymous SNV . 0 24 hm5C_associated_SNPs_69780 0 0 0 1 2 IL20RB chr3:136701002 3'AG 136701002 Downstream 97bp
chr3 136701098 136701098 1 + G A STAD 136701095 + 136701075 136701115 41 TGTGATGTCACTGATGACATCACGGCCACTGTGCCATACAA TGTGATGTCACTGATGACATCACAGCCACTGTGCCATACAA < 41bp 0.738938640270291 0.493910182341306 0.17279142 0.11082727 prediction 0.477877280540583 Functional Loss - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136701095 chr3:136701098 synonymous SNV . 0 24 hm5C_associated_SNPs_69780 0 0 0 1 2 IL20RB chr3:136701192 5'GT 136701192 Upstream 95bp
chr14 76633013 76633013 1 + A C HNSC 76633012 + 76632992 76633032 41 TACTCTTTTTACAGTGAAACCAGCAGTGTGTGTAGCAGCAG TACTCTTTTTACAGTGAAACCCGCAGTGTGTGTAGCAGCAG < 41bp 0.738937115531237 0.484456409462306 0.25513697 0.12977651 prediction 0.477874231062474 Functional Loss - GPATCH2L ENSG00000089916 CDS Human protein_coding chr14:76633012 chr14:76633013 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_69781 0 0 1 0 2 GPATCH2L chr14:76633006 3'AG 76633006 Downstream 8bp
chr14 76633013 76633013 1 + A C HNSC 76633012 + 76632992 76633032 41 TACTCTTTTTACAGTGAAACCAGCAGTGTGTGTAGCAGCAG TACTCTTTTTACAGTGAAACCCGCAGTGTGTGTAGCAGCAG < 41bp 0.738937115531237 0.484456409462306 0.25513697 0.12977651 prediction 0.477874231062474 Functional Loss - GPATCH2L ENSG00000089916 CDS Human protein_coding chr14:76633012 chr14:76633013 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_69781 0 0 1 0 2 GPATCH2L chr14:76633070 5'GT 76633070 Upstream 58bp
chr5 154330430 154330430 1 + C T CESC 154330428 + 154330408 154330448 41 AAGTGCTTCTCTTGACATTTCTCGAAAATGGGAGAAGAAGA AAGTGCTTCTCTTGACATTTCTTGAAAATGGGAGAAGAAGA < 41bp 0.738936332170748 0.441341658131062 0.84644115 0.25167343 prediction 0.477872664341495 Functional Loss - MRPL22 ENSG00000082515 CDS Human protein_coding chr5:154330428 chr5:154330430 stopgain 0.997 0 23 hm5C_associated_SNPs_69783 0 0 1 0 1 MRPL22 chr5:154330498 5'GT 154330498 Upstream 69bp
chr22 41919908 41919908 1 + C T LUAD 41919906 + 41919886 41919926 41 AACTTCACGGGCCGCAACGACGCAAACCCCGAGACCCATGC AACTTCACGGGCCGCAACGACGTAAACCCCGAGACCCATGC < 41bp 0.738924442276299 0.454479490072315 0.059293598 0.077783346 prediction 0.477848884552598 Functional Loss - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41919906 chr22:41919908 nonsynonymous SNV 0.528 2 23 hm5C_associated_SNPs_69785 0 0 1 0 2 ACO2 chr22:41919834 3'AG 41919834 Downstream 75bp
chr22 41919908 41919908 1 + C T LUAD 41919906 + 41919886 41919926 41 AACTTCACGGGCCGCAACGACGCAAACCCCGAGACCCATGC AACTTCACGGGCCGCAACGACGTAAACCCCGAGACCCATGC < 41bp 0.738924442276299 0.454479490072315 0.059293598 0.077783346 prediction 0.477848884552598 Functional Loss - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41919906 chr22:41919908 nonsynonymous SNV 0.528 2 23 hm5C_associated_SNPs_69785 0 0 1 0 2 ACO2 chr22:41919945 5'GT 41919945 Upstream 38bp
chr20 44049006 44049006 1 + C T LUAD 44049004 + 44048984 44049024 41 TCCGGATGTTCTCCCGAACCCTCACGGAGCCCTGCCCCCTG TCCGGATGTTCTCCCGAACCCTTACGGAGCCCTGCCCCCTG < 41bp 0.770118287344228 0.531194815079539 0.10062903 0.10881066 prediction 0.477846944529379 Functional Loss - PIGT ENSG00000124155 CDS Human protein_coding chr20:44049004 chr20:44049006 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_69787 0 0 1 0 2 PIGT chr20:44048972 3'AG 44048972 Downstream 35bp
chr20 44049006 44049006 1 + C T LUAD 44049004 + 44048984 44049024 41 TCCGGATGTTCTCCCGAACCCTCACGGAGCCCTGCCCCCTG TCCGGATGTTCTCCCGAACCCTTACGGAGCCCTGCCCCCTG < 41bp 0.770118287344228 0.531194815079539 0.10062903 0.10881066 prediction 0.477846944529379 Functional Loss - PIGT ENSG00000124155 CDS Human protein_coding chr20:44049004 chr20:44049006 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_69787 0 0 1 0 2 PIGT chr20:44049069 5'GT 44049069 Upstream 64bp
chr11 838021 838021 1 + G T LUAD 838019 + 837999 838039 41 GCTGTGGGGATCGGCATTGCCTGTGTGCAGGTGAGGGCACA GCTGTGGGGATCGGCATTGCCTTTGTGCAGGTGAGGGCACA < 41bp 0.738923129651231 0.396152324962151 0.2728352 0.16556218 prediction 0.477846259302461 Functional Loss - CD151 ENSG00000177697 CDS Human protein_coding chr11:838019 chr11:838021 nonsynonymous SNV 0.940 1 23 hm5C_associated_SNPs_69788 0 0 1 1 2 CD151 chr11:837942 3'AG 837942 Downstream 80bp
chr11 838021 838021 1 + G T LUAD 838019 + 837999 838039 41 GCTGTGGGGATCGGCATTGCCTGTGTGCAGGTGAGGGCACA GCTGTGGGGATCGGCATTGCCTTTGTGCAGGTGAGGGCACA < 41bp 0.738923129651231 0.396152324962151 0.2728352 0.16556218 prediction 0.477846259302461 Functional Loss - CD151 ENSG00000177697 CDS Human protein_coding chr11:838019 chr11:838021 nonsynonymous SNV 0.940 1 23 hm5C_associated_SNPs_69788 0 0 1 1 2 CD151 chr11:838028 5'GT 838028 Upstream 8bp
chr1 160100011 160100011 1 + C T ACC 160100009 + 160099989 160100029 41 TGCAGGGCAAGGAGATCCCGCTCGACAAGGAGATGCAAGAT TGCAGGGCAAGGAGATCCCGCTTGACAAGGAGATGCAAGAT < 41bp 0.738919989745009 0.442160545664991 0.25258225 0.092402995 prediction 0.477839979490019 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160100009 chr1:160100011 synonymous SNV . 0 23 hm5C_associated_SNPs_69789 0 0 0 0 1 ATP1A2 chr1:160100081 5'GT 160100081 Upstream 71bp
chr1 160100012 160100012 1 + G A UCEC 160100009 + 160099989 160100029 41 TGCAGGGCAAGGAGATCCCGCTCGACAAGGAGATGCAAGAT TGCAGGGCAAGGAGATCCCGCTCAACAAGGAGATGCAAGAT < 41bp 0.738919989745009 0.49708725993418 0.25258225 0.17151454 prediction 0.477839979490019 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160100009 chr1:160100012 nonsynonymous SNV 0.776 1 24 hm5C_associated_SNPs_69790 1 0 0 0 1 ATP1A2 chr1:160100081 5'GT 160100081 Upstream 70bp
chr7 142561083 142561083 1 + A T LUAD 142561079 + 142561059 142561099 41 TGGTGTCTTCAGTTCTGGCTCTGGAAGGTAAGAGGGAGGGG TGGTGTCTTCAGTTCTGGCTCTGGTAGGTAAGAGGGAGGGG < 41bp 0.738917508861285 0.414881482922585 0.45905742 0.38005492 prediction 0.477835017722571 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142561079 chr7:142561083 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_69792 0 0 0 0 1 EPHB6 chr7:142561085 5'GT 142561085 Upstream 3bp
chr4 40350985 40350985 1 + C T SKCM 40350983 + 40350963 40351003 41 ACCTGGGATGCACCGGCCATCACCAAAAGCTCCTGTGTGGT ACCTGGGATGCACCGGCCATCATCAAAAGCTCCTGTGTGGT < 41bp 0.832532308400878 0.593622186394013 0.38573167 0.17216957 prediction 0.477820244013731 Functional Loss - CHRNA9 ENSG00000174343 CDS Human protein_coding chr4:40350983 chr4:40350985 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_69795 0 0 0 0 1 CHRNA9 chr4:40350899 3'AG 40350899 Downstream 87bp
chr16 57849373 57849373 1 + A T rs74019704 57849369 + 57849349 57849389 41 AAAGCCCGAGGGGCTGCTTACAAGACTCTGCCCATCACCCC AAAGCCCGAGGGGCTGCTTACAAGTCTCTGCCCATCACCCC < 41bp 0.816575670765632 0.577666667405773 0.5524805 0.22262299 prediction 0.477818006719718 Functional Loss - LOC388282 ENSG00000187185 UTR5 Human lincRNA chr16:57849369 chr16:57849373 . . 0 25 hm5C_associated_SNPs_69796 0 0 0 0 1 LOC388282 chr16:57849328 3'AG 57849328 Downstream 46bp
chr18 48248453 48248453 1 + T C rs16952476 48248452 + 48248432 48248472 41 GCCTCTGCGCAAGCTGCTCCCTGAAGTGAACAGTGAAGGTA GCCTCTGCGCAAGCTGCTCCCCGAAGTGAACAGTGAAGGTA < 41bp 0.782141684519394 0.543241531529542 0.45961246 0.8873819 prediction 0.477800305979703 Functional Loss - MAPK4 ENSG00000141639 CDS Human protein_coding chr18:48248452 chr18:48248453 synonymous SNV . 0 22 hm5C_associated_SNPs_69800 0 0 0 0 1 MAPK4 chr18:48248469 5'GT 48248469 Upstream 17bp
chr7 7646651 7646651 1 + G C rs7806046 7646650 + 7646630 7646670 41 CCATGCAGAGTGCCCTGTGTCGGCATGCACGTGTAAATGTA CCATGCAGAGTGCCCTGTGTCCGCATGCACGTGTAAATGTA < 41bp 0.859037470663537 0.620143378136791 0.784523 0.108353704 prediction 0.477788185053491 Functional Loss - MIOS ENSG00000164654 CDS Human protein_coding chr7:7646650 chr7:7646651 synonymous SNV . 0 22 hm5C_associated_SNPs_69802 0 0 0 0 1 MIOS chr7:7646627 3'AG 7646627 Downstream 25bp
chr20 62660744 62660744 1 + G T ESCA 62660742 + 62660722 62660762 41 AATTATAGGTATCCTGTGGTCTGAGGCCATCTTCCTCGAGG AATTATAGGTATCCTGTGGTCTTAGGCCATCTTCCTCGAGG < 41bp 0.738886469856624 0.390314110231932 0.38524073 0.10497016 prediction 0.477772939713247 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62660742 chr20:62660744 stopgain 1.000 1 23 hm5C_associated_SNPs_69806 0 0 1 0 1 PRPF6 chr20:62660730 3'AG 62660730 Downstream 15bp
chr6 345906 345906 1 + G A STAD 345903 + 345883 345923 41 TCATTCACGAGTGCCGGCTCCGCGGTGAGAGCTGCCTTGTA TCATTCACGAGTGCCGGCTCCGCAGTGAGAGCTGCCTTGTA < 41bp 0.751910412282281 0.51302525463321 0.3498947 0.10642403 prediction 0.477770315298142 Functional Loss - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:345903 chr6:345906 nonsynonymous SNV 0.601 4 24 hm5C_associated_SNPs_69807 0 0 1 0 2 DUSP22 chr6:345854 3'AG 345854 Downstream 53bp
chr6 345906 345906 1 + G A STAD 345903 + 345883 345923 41 TCATTCACGAGTGCCGGCTCCGCGGTGAGAGCTGCCTTGTA TCATTCACGAGTGCCGGCTCCGCAGTGAGAGCTGCCTTGTA < 41bp 0.751910412282281 0.51302525463321 0.3498947 0.10642403 prediction 0.477770315298142 Functional Loss - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:345903 chr6:345906 nonsynonymous SNV 0.601 4 24 hm5C_associated_SNPs_69807 0 0 1 0 2 DUSP22 chr6:345928 5'GT 345928 Upstream 23bp
chr1 9777023 9777023 1 + T C UCEC 9777022 + 9777002 9777042 41 TGCACCCCGTCTCAGTACATCTGCAGCTGCCTGCACAGTGG TGCACCCCGTCTCAGTACATCCGCAGCTGCCTGCACAGTGG < 41bp 0.783725476286054 0.544842162704495 0.4133325 0.2476007 prediction 0.477766627163118 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9777022 chr1:9777023 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_69808 0 0 0 0 1 PIK3CD chr1:9777017 3'AG 9777017 Downstream 7bp
chr1 47034158 47034158 1 + C T UCEC 47034156 + 47034136 47034176 41 TATATTTTCTGGTTTCAGATCACGATGAGCAATGCCTGACA TATATTTTCTGGTTTCAGATCATGATGAGCAATGCCTGACA < 41bp 0.738880890130561 0.471424646346564 0.18132287 0.17195436 prediction 0.477761780261123 Functional Loss - MKNK1 ENSG00000079277 CDS Human protein_coding chr1:47034156 chr1:47034158 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_69809 0 0 0 0 1 MKNK1 chr1:47034154 3'AG 47034154 Downstream 5bp
chr6 159086520 159086520 1 + G T TGCT 159086518 + 159086498 159086538 41 AGTGCTGTGCGCGCTGCCAGCAGGTGCTGGGGTTCCTGCTG AGTGCTGTGCGCGCTGCCAGCATGTGCTGGGGTTCCTGCTG < 41bp 0.909233667105594 0.670353124149173 0.93274486 0.43680683 prediction 0.477761085912842 Functional Loss - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159086518 chr6:159086520 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_69810 0 0 0 0 1 SYTL3 chr6:159086427 3'AG 159086427 Downstream 94bp
chr3 52282379 52282379 1 + G A COAD 52282376 + 52282356 52282396 41 TGTCTATCCTGAGCTTCTGGCTGGTGAGTTCACCCGACTGG TGTCTATCCTGAGCTTCTGGCTGATGAGTTCACCCGACTGG < 41bp 0.77455724780271 0.535677149726457 0.41259935 0.24136487 prediction 0.477760196152506 Functional Loss - PPM1M ENSG00000164088 CDS Human protein_coding chr3:52282376 chr3:52282379 nonsynonymous SNV 0.984 0 24 hm5C_associated_SNPs_69811 0 0 0 0 2 PPM1M chr3:52282351 3'AG 52282351 Downstream 29bp
chr3 52282379 52282379 1 + G A COAD 52282376 + 52282356 52282396 41 TGTCTATCCTGAGCTTCTGGCTGGTGAGTTCACCCGACTGG TGTCTATCCTGAGCTTCTGGCTGATGAGTTCACCCGACTGG < 41bp 0.77455724780271 0.535677149726457 0.41259935 0.24136487 prediction 0.477760196152506 Functional Loss - PPM1M ENSG00000164088 CDS Human protein_coding chr3:52282376 chr3:52282379 nonsynonymous SNV 0.984 0 24 hm5C_associated_SNPs_69811 0 0 0 0 2 PPM1M chr3:52282469 5'GT 52282469 Upstream 91bp
chr1 155154356 155154356 1 + G A SKCM 155154353 + 155154333 155154373 41 CACTTCTTCCTCGATAGCCGCTGGGGCGCAAGCCGAGAGCG CACTTCTTCCTCGATAGCCGCTGAGGCGCAAGCCGAGAGCG < 41bp 0.739734659418043 0.500856859301311 0.89073515 0.20619047 prediction 0.477755600233466 Functional Loss - TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155154353 chr1:155154356 stopgain 0.910 1 24 hm5C_associated_SNPs_69812 0 0 0 0 1 TRIM46 chr1:155154328 3'AG 155154328 Downstream 29bp
chr2 119731921 119731921 1 + A C ESCA 119731920 + 119731900 119731940 41 CTTCCTCAGGTCTTCAAGGTCACAAGGGGGCCATGGGCATG CTTCCTCAGGTCTTCAAGGTCCCAAGGGGGCCATGGGCATG < 41bp 0.804761149969219 0.565885489105861 0.86474115 0.5733972 prediction 0.477751321726717 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119731920 chr2:119731921 nonsynonymous SNV 0.032 1 22 hm5C_associated_SNPs_69813 0 0 0 0 2 MARCO chr2:119731909 3'AG 119731909 Downstream 13bp
chr2 119731921 119731921 1 + A C ESCA 119731920 + 119731900 119731940 41 CTTCCTCAGGTCTTCAAGGTCACAAGGGGGCCATGGGCATG CTTCCTCAGGTCTTCAAGGTCCCAAGGGGGCCATGGGCATG < 41bp 0.804761149969219 0.565885489105861 0.86474115 0.5733972 prediction 0.477751321726717 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119731920 chr2:119731921 nonsynonymous SNV 0.032 1 22 hm5C_associated_SNPs_69813 0 0 0 0 2 MARCO chr2:119732016 5'GT 119732016 Upstream 96bp
chr17 61685207 61685207 1 + G T LUSC 61685204 + 61685184 61685224 41 TGCACCAAGTGAGGAAGAAGCTGGACTCCCTGGGCCTGTGT TGCACCAAGTGAGGAAGAAGCTGTACTCCCTGGGCCTGTGT < 41bp 0.918078760915293 0.679204172838425 0.90818787 0.5553682 prediction 0.477749176153737 Functional Loss - TACO1 ENSG00000136463 CDS Human protein_coding chr17:61685204 chr17:61685207 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_69814 0 0 1 0 1 TACO1 chr17:61685162 3'AG 61685162 Downstream 46bp
chr1 201969078 201969078 1 + G C LUAD 201969074 + 201969054 201969094 41 CTGCAACGGGGCGGGCTCTGCTGCGTCAGCACATGGACATC CTGCAACGGGGCGGGCTCTGCTGCCTCAGCACATGGACATC < 41bp 0.848203860932374 0.609333583506242 0.47483402 0.36113352 prediction 0.477740554852264 Functional Loss - RNPEP ENSG00000176393 CDS Human protein_coding chr1:201969074 chr1:201969078 nonsynonymous SNV 0.708 1 25 hm5C_associated_SNPs_69815 0 0 1 0 2 RNPEP chr1:201969030 3'AG 201969030 Downstream 49bp
chr1 201969078 201969078 1 + G C LUAD 201969074 + 201969054 201969094 41 CTGCAACGGGGCGGGCTCTGCTGCGTCAGCACATGGACATC CTGCAACGGGGCGGGCTCTGCTGCCTCAGCACATGGACATC < 41bp 0.848203860932374 0.609333583506242 0.47483402 0.36113352 prediction 0.477740554852264 Functional Loss - RNPEP ENSG00000176393 CDS Human protein_coding chr1:201969074 chr1:201969078 nonsynonymous SNV 0.708 1 25 hm5C_associated_SNPs_69815 0 0 1 0 2 RNPEP chr1:201969143 5'GT 201969143 Upstream 66bp
chr19 50173480 50173480 1 + C T SKCM 50173478 + 50173458 50173498 41 TCTTCCACCCTACAGCTGGCCTCGGACCCCGCCCTGCGCAG TCTTCCACCCTACAGCTGGCCTTGGACCCCGCCCTGCGCAG < 41bp 0.744120637104535 0.505250849726487 0.31087294 0.17807189 prediction 0.477739574756096 Functional Loss - BCL2L12 ENSG00000126453 CDS Human protein_coding chr19:50173478 chr19:50173480 nonsynonymous SNV 0.661 0 23 hm5C_associated_SNPs_69816 0 0 1 0 1 BCL2L12 chr19:50173473 3'AG 50173473 Downstream 8bp
chr11 123484349 123484349 1 + G T UCEC 123484347 + 123484327 123484367 41 ACAGATGAGGATGTGGGCCACAGGATCAAACATGTGGCAGG ACAGATGAGGATGTGGGCCACATGATCAAACATGTGGCAGG < 41bp 0.898161222916923 0.659296849808396 0.76601183 0.21637335 prediction 0.477728746217055 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123484347 chr11:123484349 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_69820 0 0 0 0 1 GRAMD1B chr11:123484366 5'GT 123484366 Upstream 18bp
chr1 238045830 238045830 1 - T G STAD 238045834 - 238045814 238045854 41 TCCAGGTGTTCCTGTAGACTCGAAAGTTCTGTGGGTGGCAG TCCAGGTGTTCCTGTAGACTCGAACGTTCTGTGGGTGGCAG < 41bp 0.738860710101453 0.351905627562824 0.35652196 0.2824636 prediction 0.477721420202907 Functional Loss - ZP4 ENSG00000116996 CDS Human protein_coding chr1:238045834 chr1:238045830 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_69821 0 0 0 0 1 ZP4 chr1:238045849 3'AG 238045849 Downstream 20bp
chr1 1560526 1560526 1 + G T CESC 1560524 + 1560504 1560544 41 CCTCAAGTGTGTGGGCGAGGCAGCGGGCGGCTTCTACTACA CCTCAAGTGTGTGGGCGAGGCATCGGGCGGCTTCTACTACA < 41bp 0.738854873011045 0.403094629042987 0.5057029 0.3349878 prediction 0.47770974602209 Functional Loss - MIB2 ENSG00000197530 CDS Human protein_coding chr1:1560524 chr1:1560526 nonsynonymous SNV 0.136 0 23 hm5C_associated_SNPs_69824 0 0 1 0 1 MIB2 chr1:1560565 5'GT 1560565 Upstream 40bp
chr20 33507309 33507309 1 + C T rs147058493 33507307 + 33507287 33507327 41 AGGCAGGGGATGAGTGTGAGCCCGAGTGGTGTGATGCCGAG AGGCAGGGGATGAGTGTGAGCCTGAGTGGTGTGATGCCGAG < 41bp 0.836039039423514 0.597184274037281 0.26060814 0.25189987 prediction 0.477709530772465 Functional Loss - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33507307 chr20:33507309 synonymous SNV . 0 23 hm5C_associated_SNPs_69825 0 0 1 0 1 ACSS2 chr20:33507238 3'AG 33507238 Downstream 72bp
chr9 37428531 37428531 1 + C T ACC 37428529 + 37428509 37428549 41 TGGCTGTGTGGCTATGGACTCACGCAGAGCACTGTCGGCAT TGGCTGTGTGGCTATGGACTCATGCAGAGCACTGTCGGCAT < 41bp 0.763030701793945 0.524177719078514 0.14805707 0.2482127 prediction 0.477705965430862 Functional Loss - GRHPR ENSG00000137106 CDS Human protein_coding chr9:37428529 chr9:37428531 nonsynonymous SNV 0.947 2 23 hm5C_associated_SNPs_69826 0 0 1 0 2 GRHPR chr9:37428481 3'AG 37428481 Downstream 51bp
chr9 37428531 37428531 1 + C T ACC 37428529 + 37428509 37428549 41 TGGCTGTGTGGCTATGGACTCACGCAGAGCACTGTCGGCAT TGGCTGTGTGGCTATGGACTCATGCAGAGCACTGTCGGCAT < 41bp 0.763030701793945 0.524177719078514 0.14805707 0.2482127 prediction 0.477705965430862 Functional Loss - GRHPR ENSG00000137106 CDS Human protein_coding chr9:37428529 chr9:37428531 nonsynonymous SNV 0.947 2 23 hm5C_associated_SNPs_69826 0 0 1 0 2 GRHPR chr9:37428569 5'GT 37428569 Upstream 39bp
chr10 75525577 75525577 1 + G T CESC 75525575 + 75525555 75525595 41 CAGTTCCCCCCCAGTATTTTCAGCACCTGGATCATACCGGC CAGTTCCCCCCCAGTATTTTCATCACCTGGATCATACCGGC < 41bp 0.738850858492609 0.388491840862444 0.24564192 0.058589727 prediction 0.477701716985217 Functional Loss - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75525575 chr10:75525577 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_69828 0 0 1 0 2 SEC24C chr10:75525558 3'AG 75525558 Downstream 20bp
chr10 75525577 75525577 1 + G T CESC 75525575 + 75525555 75525595 41 CAGTTCCCCCCCAGTATTTTCAGCACCTGGATCATACCGGC CAGTTCCCCCCCAGTATTTTCATCACCTGGATCATACCGGC < 41bp 0.738850858492609 0.388491840862444 0.24564192 0.058589727 prediction 0.477701716985217 Functional Loss - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75525575 chr10:75525577 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_69828 0 0 1 0 2 SEC24C chr10:75525673 5'GT 75525673 Upstream 97bp
chr1 168282019 168282019 1 + A C LUSC 168282018 + 168281998 168282038 41 CCAGGCCCGGAGGTGCACGCCAGCACCCCAGGAGCATTTCT CCAGGCCCGGAGGTGCACGCCCGCACCCCAGGAGCATTTCT < 41bp 0.777150818626367 0.538304326815175 0.20379835 0.10939279 prediction 0.477692983622384 Functional Loss - TBX19 ENSG00000143178 CDS Human protein_coding chr1:168282018 chr1:168282019 nonsynonymous SNV 0.009 2 22 hm5C_associated_SNPs_69830 0 0 0 0 1 TBX19 chr1:168281946 3'AG 168281946 Downstream 74bp
chr16 57394368 57394368 1 + G A BLCA 57394365 + 57394345 57394385 41 CTAGGCCCCTACGGCGCCAACATGGAAGACAGCGTCTGCTG CTAGGCCCCTACGGCGCCAACATAGAAGACAGCGTCTGCTG < 41bp 0.758460260366988 0.519614917024558 0.22906378 0.050811112 prediction 0.477690686684859 Functional Loss - CCL22 ENSG00000102962 CDS Human protein_coding chr16:57394365 chr16:57394368 nonsynonymous SNV 0.987 0 24 hm5C_associated_SNPs_69831 0 0 0 0 1 CCL22 chr16:57394349 3'AG 57394349 Downstream 20bp
chr14 105054178 105054178 1 + C T STAD 105054176 + 105054156 105054196 41 AGCCCCAGAGGACCTCGAGGCGCGTGTGGTTCCGAGAACCC AGCCCCAGAGGACCTCGAGGCGTGTGTGGTTCCGAGAACCC < 41bp 0.76066547913508 0.521824542099272 0.55524915 0.5735737 prediction 0.477681874071614 Functional Loss - C14orf180 ENSG00000184601 CDS Human protein_coding chr14:105054176 chr14:105054178 synonymous SNV . 0 23 hm5C_associated_SNPs_69832 0 0 0 0 2 C14orf180 chr14:105054086 3'AG 105054086 Downstream 93bp
chr14 105054178 105054178 1 + C T STAD 105054176 + 105054156 105054196 41 AGCCCCAGAGGACCTCGAGGCGCGTGTGGTTCCGAGAACCC AGCCCCAGAGGACCTCGAGGCGTGTGTGGTTCCGAGAACCC < 41bp 0.76066547913508 0.521824542099272 0.55524915 0.5735737 prediction 0.477681874071614 Functional Loss - C14orf180 ENSG00000184601 CDS Human protein_coding chr14:105054176 chr14:105054178 synonymous SNV . 0 23 hm5C_associated_SNPs_69832 0 0 0 0 2 C14orf180 chr14:105054215 5'GT 105054215 Upstream 38bp
chr14 52182105 52182105 1 + G T KIRP 52182102 + 52182082 52182122 41 GCCCGGAAGCTCATATACTACACGGGGTGCCCCATGCGCTC GCCCGGAAGCTCATATACTACACTGGGTGCCCCATGCGCTC < 41bp 0.777161826621364 0.538325179260422 0.24268875 0.055971712 prediction 0.477673294721883 Functional Loss - FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52182102 chr14:52182105 synonymous SNV . 0 24 hm5C_associated_SNPs_69834 0 0 1 0 1 FRMD6 chr14:52182043 3'AG 52182043 Downstream 63bp
chr14 65205488 65205488 1 + C T LUAD 65205486 + 65205466 65205506 41 GGGCGCAGGGAGTCTGAAAGCTCCAGGAGCAGCAGAAGGCC GGGCGCAGGGAGTCTGAAAGCTTCAGGAGCAGCAGAAGGCC < 41bp 0.838387706530588 0.59955352042199 0.7894907 0.14305794 prediction 0.477668372217196 Functional Loss - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65205486 chr14:65205488 nonsynonymous SNV 0.781 1 23 hm5C_associated_SNPs_69836 0 0 1 0 2 PLEKHG3 chr14:65205460 3'AG 65205460 Downstream 29bp
chr14 65205488 65205488 1 + C T LUAD 65205486 + 65205466 65205506 41 GGGCGCAGGGAGTCTGAAAGCTCCAGGAGCAGCAGAAGGCC GGGCGCAGGGAGTCTGAAAGCTTCAGGAGCAGCAGAAGGCC < 41bp 0.838387706530588 0.59955352042199 0.7894907 0.14305794 prediction 0.477668372217196 Functional Loss - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65205486 chr14:65205488 nonsynonymous SNV 0.781 1 23 hm5C_associated_SNPs_69836 0 0 1 0 2 PLEKHG3 chr14:65205573 5'GT 65205573 Upstream 86bp
chr17 4860152 4860152 1 + G A UCEC 4860149 + 4860129 4860169 41 AAGACTGGCGCCCCCTGCCGCTCGGAGCGTCTGGCCAAATA AAGACTGGCGCCCCCTGCCGCTCAGAGCGTCTGGCCAAATA < 41bp 0.743345802908011 0.504513769059317 0.22438341 0.13150105 prediction 0.477664067697388 Functional Loss - ENO3 ENSG00000108515 CDS Human protein_coding chr17:4860149 chr17:4860152 synonymous SNV . 0 24 hm5C_associated_SNPs_69837 0 0 1 0 2 ENO3 chr17:4860126 3'AG 4860126 Downstream 27bp
chr17 4860152 4860152 1 + G A UCEC 4860149 + 4860129 4860169 41 AAGACTGGCGCCCCCTGCCGCTCGGAGCGTCTGGCCAAATA AAGACTGGCGCCCCCTGCCGCTCAGAGCGTCTGGCCAAATA < 41bp 0.743345802908011 0.504513769059317 0.22438341 0.13150105 prediction 0.477664067697388 Functional Loss - ENO3 ENSG00000108515 CDS Human protein_coding chr17:4860149 chr17:4860152 synonymous SNV . 0 24 hm5C_associated_SNPs_69837 0 0 1 0 2 ENO3 chr17:4860184 5'GT 4860184 Upstream 33bp
chr11 8111755 8111755 1 + G T LUAD 8111753 + 8111733 8111773 41 CTGGTGGAGTCCTACCTCAGCAGCAGTGGCAGCACCAGCTA CTGGTGGAGTCCTACCTCAGCATCAGTGGCAGCACCAGCTA < 41bp 0.897856700241729 0.659024932102797 0.34096426 0.20041999 prediction 0.477663536277865 Functional Loss - TUB ENSG00000166402 CDS Human protein_coding chr11:8111753 chr11:8111755 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_69838 0 0 1 0 1 TUB chr11:8111778 5'GT 8111778 Upstream 24bp
chr10 60562911 60562911 1 + G A SKCM 60562908 + 60562888 60562928 41 TTTGGCTGACAAGAAGGCTCCAGGGAGTGAGCGCGCTGCAG TTTGGCTGACAAGAAGGCTCCAGAGAGTGAGCGCGCTGCAG < 41bp 0.738830211231878 0.497168773879107 0.8972714 0.7351251 prediction 0.477660422463756 Functional Loss - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60562908 chr10:60562911 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_69839 0 0 1 0 2 BICC1 chr10:60562837 3'AG 60562837 Downstream 75bp
chr10 60562911 60562911 1 + G A SKCM 60562908 + 60562888 60562928 41 TTTGGCTGACAAGAAGGCTCCAGGGAGTGAGCGCGCTGCAG TTTGGCTGACAAGAAGGCTCCAGAGAGTGAGCGCGCTGCAG < 41bp 0.738830211231878 0.497168773879107 0.8972714 0.7351251 prediction 0.477660422463756 Functional Loss - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60562908 chr10:60562911 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_69839 0 0 1 0 2 BICC1 chr10:60563002 5'GT 60563002 Upstream 92bp
chr11 66261065 66261065 1 + C T UCEC 66261063 + 66261043 66261083 41 TCGATGTGCAGGTGGGCCTGCACGAGCTGCTGGGCCATGGC TCGATGTGCAGGTGGGCCTGCATGAGCTGCTGGGCCATGGC < 41bp 0.829918857898688 0.59108936750397 0.42943716 0.38092583 prediction 0.477658980789435 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66261063 chr11:66261065 synonymous SNV . 0 23 hm5C_associated_SNPs_69841 0 0 1 0 2 DPP3 chr11:66261012 3'AG 66261012 Downstream 54bp
chr11 66261065 66261065 1 + C T UCEC 66261063 + 66261043 66261083 41 TCGATGTGCAGGTGGGCCTGCACGAGCTGCTGGGCCATGGC TCGATGTGCAGGTGGGCCTGCATGAGCTGCTGGGCCATGGC < 41bp 0.829918857898688 0.59108936750397 0.42943716 0.38092583 prediction 0.477658980789435 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66261063 chr11:66261065 synonymous SNV . 0 23 hm5C_associated_SNPs_69841 0 0 1 0 2 DPP3 chr11:66261104 5'GT 66261104 Upstream 40bp
chr15 45444508 45444508 1 + C T BRCA 45444506 + 45444486 45444526 41 TACGCCTTTGCCGCACATCACACGGGCATCACAGACACCAC TACGCCTTTGCCGCACATCACATGGGCATCACAGACACCAC < 41bp 0.782157451237664 0.543328078320963 0.23022881 0.37717572 prediction 0.477658745833403 Functional Loss - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45444506 chr15:45444508 nonsynonymous SNV 0.589 1 23 hm5C_associated_SNPs_69842 0 0 0 0 1 DUOX1 chr15:45444484 3'AG 45444484 Downstream 25bp
chr15 41793881 41793881 1 + C T COAD 41793879 + 41793859 41793899 41 GGGCTGATCCTGAAGCGCTGCTCGGAGCCGGAGCGCTACTG GGGCTGATCCTGAAGCGCTGCTTGGAGCCGGAGCGCTACTG < 41bp 0.73882779853129 0.476840907106163 0.84475845 0.8124547 prediction 0.477655597062579 Functional Loss - ITPKA ENSG00000137825 CDS Human protein_coding chr15:41793879 chr15:41793881 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_69845 0 0 1 0 1 ITPKA chr15:41793833 3'AG 41793833 Downstream 49bp
chr4 71863888 71863888 1 + G T UCEC 71863885 + 71863865 71863905 41 GGTGCAATGTTCAAAGTACTCAAGATGAATTTGAGGTATGA GGTGCAATGTTCAAAGTACTCAATATGAATTTGAGGTATGA < 41bp 0.784853207800695 0.546028081355554 0.32112494 0.08903274 prediction 0.47765025289028 Functional Loss - DCK ENSG00000156136 CDS Human protein_coding chr4:71863885 chr4:71863888 nonsynonymous SNV 0.912 3 24 hm5C_associated_SNPs_69847 0 0 1 0 1 DCK chr4:71863899 5'GT 71863899 Upstream 12bp
chr18 28913647 28913647 1 + C T UCEC 28913645 + 28913625 28913665 41 GTGAGTGCAACATTAAAATCCTCGATGTCAATGATAATATC GTGAGTGCAACATTAAAATCCTTGATGTCAATGATAATATC < 41bp 0.738824222280626 0.440857696258454 0.31088358 0.052381486 prediction 0.477648444561252 Functional Loss - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28913645 chr18:28913647 synonymous SNV . 0 23 hm5C_associated_SNPs_69849 0 0 0 0 2 DSG1 chr18:28913552 3'AG 28913552 Downstream 96bp
chr18 28913647 28913647 1 + C T UCEC 28913645 + 28913625 28913665 41 GTGAGTGCAACATTAAAATCCTCGATGTCAATGATAATATC GTGAGTGCAACATTAAAATCCTTGATGTCAATGATAATATC < 41bp 0.738824222280626 0.440857696258454 0.31088358 0.052381486 prediction 0.477648444561252 Functional Loss - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28913645 chr18:28913647 synonymous SNV . 0 23 hm5C_associated_SNPs_69849 0 0 0 0 2 DSG1 chr18:28913686 5'GT 28913686 Upstream 40bp
chr1 233802686 233802686 1 + G T STAD 233802683 + 233802663 233802703 41 TGGCCTGGGGGATTATGTGCCTGGGGAAGGCTACAATCAAA TGGCCTGGGGGATTATGTGCCTGTGGAAGGCTACAATCAAA < 41bp 0.738819952652738 0.365150452247277 0.55358464 0.24564394 prediction 0.477639905305475 Functional Loss - KCNK1 ENSG00000135750 CDS Human protein_coding chr1:233802683 chr1:233802686 nonsynonymous SNV 0.797 3 24 hm5C_associated_SNPs_69850 0 0 1 0 1 KCNK1 chr1:233802736 5'GT 233802736 Upstream 51bp
chr7 45216944 45216944 1 + G A PRAD 45216941 + 45216921 45216961 41 AGCAGGCGGCTGCAACGAGACAGGCATGTTGGAGAGGCTGC AGCAGGCGGCTGCAACGAGACAGACATGTTGGAGAGGCTGC < 41bp 0.73881312650584 0.496497055429896 0.1491028 0.052751094 prediction 0.477626253011679 Functional Loss - RAMP3 ENSG00000122679 CDS Human protein_coding chr7:45216941 chr7:45216944 nonsynonymous SNV 0.178 0 24 hm5C_associated_SNPs_69853 0 0 0 0 2 RAMP3 chr7:45216908 3'AG 45216908 Downstream 37bp
chr7 45216944 45216944 1 + G A PRAD 45216941 + 45216921 45216961 41 AGCAGGCGGCTGCAACGAGACAGGCATGTTGGAGAGGCTGC AGCAGGCGGCTGCAACGAGACAGACATGTTGGAGAGGCTGC < 41bp 0.73881312650584 0.496497055429896 0.1491028 0.052751094 prediction 0.477626253011679 Functional Loss - RAMP3 ENSG00000122679 CDS Human protein_coding chr7:45216941 chr7:45216944 nonsynonymous SNV 0.178 0 24 hm5C_associated_SNPs_69853 0 0 0 0 2 RAMP3 chr7:45217040 5'GT 45217040 Upstream 97bp
chr2 136409574 136409574 1 + A C rs2305165 136409573 + 136409553 136409593 41 GCCAGCCTGTGCTCCAGCAGCAGGGATATATTCAGCAGCCA GCCAGCCTGTGCTCCAGCAGCCGGGATATATTCAGCAGCCA < 41bp 0.738810280025134 0.484005722022943 0.77565145 0.6650489 prediction 0.477620560050269 Functional Loss - R3HDM1 ENSG00000048991 CDS Human protein_coding chr2:136409573 chr2:136409574 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_69854 0 0 1 0 1 R3HDM1 chr2:136409602 5'GT 136409602 Upstream 29bp
chr15 40754399 40754399 1 + G A UCEC 40754396 + 40754376 40754416 41 GCCTAGCCACCCCAAGCAGCCACGTGTCCAGCGCCCACGCC GCCTAGCCACCCCAAGCAGCCACATGTCCAGCGCCCACGCC < 41bp 0.748774333253639 0.509964230380872 0.3998176 0.91736495 prediction 0.477620205745533 Functional Loss - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40754396 chr15:40754399 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_69855 0 0 0 0 1 BAHD1 chr15:40754493 5'GT 40754493 Upstream 95bp
chr12 120114397 120114397 1 + C T UCEC 120114395 + 120114375 120114415 41 AGGAGCCCTACGTCTGCAAACCCGAAGAGCGCTTTCGGGCA AGGAGCCCTACGTCTGCAAACCTGAAGAGCGCTTTCGGGCA < 41bp 0.839998784450033 0.601191295900145 0.11988297 0.094929755 prediction 0.477614977099777 Functional Loss - PRKAB1 ENSG00000111725 CDS Human protein_coding chr12:120114395 chr12:120114397 synonymous SNV . 0 23 hm5C_associated_SNPs_69856 0 0 1 0 2 PRKAB1 chr12:120114342 3'AG 120114342 Downstream 56bp
chr12 120114397 120114397 1 + C T UCEC 120114395 + 120114375 120114415 41 AGGAGCCCTACGTCTGCAAACCCGAAGAGCGCTTTCGGGCA AGGAGCCCTACGTCTGCAAACCTGAAGAGCGCTTTCGGGCA < 41bp 0.839998784450033 0.601191295900145 0.11988297 0.094929755 prediction 0.477614977099777 Functional Loss - PRKAB1 ENSG00000111725 CDS Human protein_coding chr12:120114395 chr12:120114397 synonymous SNV . 0 23 hm5C_associated_SNPs_69856 0 0 1 0 2 PRKAB1 chr12:120114475 5'GT 120114475 Upstream 79bp
chr12 1754999 1754999 1 + G A UCEC 1754996 + 1754976 1755016 41 CAGACGTAGCCTGCAAATGCCACGGCGTCTCGGGGTCCTGC CAGACGTAGCCTGCAAATGCCACAGCGTCTCGGGGTCCTGC < 41bp 0.744172907689221 0.505367645364038 0.1665979 0.029469311 prediction 0.477610524650365 Functional Loss - WNT5B ENSG00000111186 CDS Human protein_coding chr12:1754996 chr12:1754999 nonsynonymous SNV 0.992 5 24 hm5C_associated_SNPs_69858 0 0 0 0 1 WNT5B chr12:1754960 3'AG 1754960 Downstream 40bp
chr5 23522457 23522457 1 + G T UCEC 23522454 + 23522434 23522474 41 AAAGAAAGATGTATAGCCTGCGAGAAAGAAAGGGTCATGCA AAAGAAAGATGTATAGCCTGCGATAAAGAAAGGGTCATGCA < 41bp 0.73880509855709 0.343212997109003 0.68654054 0.14531234 prediction 0.477610197114181 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23522454 chr5:23522457 stopgain 0.306 0 24 hm5C_associated_SNPs_69859 0 0 0 0 2 PRDM9 chr5:23522413 3'AG 23522413 Downstream 45bp
chr5 23522457 23522457 1 + G T UCEC 23522454 + 23522434 23522474 41 AAAGAAAGATGTATAGCCTGCGAGAAAGAAAGGGTCATGCA AAAGAAAGATGTATAGCCTGCGATAAAGAAAGGGTCATGCA < 41bp 0.73880509855709 0.343212997109003 0.68654054 0.14531234 prediction 0.477610197114181 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23522454 chr5:23522457 stopgain 0.306 0 24 hm5C_associated_SNPs_69859 0 0 0 0 2 PRDM9 chr5:23522514 5'GT 23522514 Upstream 58bp
chr7 92020615 92020615 1 + C T UCEC 92020613 + 92020593 92020633 41 AGAATTCCTGGCATCTGTGGCTCGGGGAGTAGCTCCTGCAG AGAATTCCTGGCATCTGTGGCTTGGGGAGTAGCTCCTGCAG < 41bp 0.821334681210124 0.582543604291603 0.4482479 0.576711 prediction 0.477582153837043 Functional Loss - ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:92020613 chr7:92020615 nonsynonymous SNV 0.989 4 23 hm5C_associated_SNPs_69861 0 0 1 0 1 ANKIB1 chr7:92020658 5'GT 92020658 Upstream 44bp
chrX 9912725 9912725 1 + G T SARC 9912723 + 9912703 9912743 41 GCCGCAAGCTGCAGGTGCTCCGGGAGGCCCGCGAGAGCCTG GCCGCAAGCTGCAGGTGCTCCGTGAGGCCCGCGAGAGCCTG < 41bp 0.901301763849147 0.662517324598426 0.900627 0.18262926 prediction 0.477568878501442 Functional Loss - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9912723 chrX:9912725 synonymous SNV . 0 23 hm5C_associated_SNPs_69863 0 0 0 0 2 SHROOM2 chrX:9912681 3'AG 9912681 Downstream 45bp
chrX 9912725 9912725 1 + G T SARC 9912723 + 9912703 9912743 41 GCCGCAAGCTGCAGGTGCTCCGGGAGGCCCGCGAGAGCCTG GCCGCAAGCTGCAGGTGCTCCGTGAGGCCCGCGAGAGCCTG < 41bp 0.901301763849147 0.662517324598426 0.900627 0.18262926 prediction 0.477568878501442 Functional Loss - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9912723 chrX:9912725 synonymous SNV . 0 23 hm5C_associated_SNPs_69863 0 0 0 0 2 SHROOM2 chrX:9912684 3'AG 9912684 Downstream 42bp
chrX 56592023 56592023 1 + C T THCA 56592021 + 56592001 56592041 41 GGCCCTGGCTGGAGCAAATGCTCCACAGCTGCCGAATCCAG GGCCCTGGCTGGAGCAAATGCTTCACAGCTGCCGAATCCAG < 41bp 0.738781069089658 0.458872464016781 0.88648033 0.14651 prediction 0.477562138179317 Functional Loss - UBQLN2 ENSG00000188021 CDS Human protein_coding chrX:56592021 chrX:56592023 nonsynonymous SNV 0.942 0 23 hm5C_associated_SNPs_69866 0 0 1 0 1 UBQLN2 chrX:56592002 3'AG 56592002 Downstream 22bp
chr19 4491801 4491801 1 + G A UCEC 4491798 + 4491778 4491818 41 GAAAGCAGCGGTCCGGGCGCCACGGAGGGGCCCTCTGGGGG GAAAGCAGCGGTCCGGGCGCCACAGAGGGGCCCTCTGGGGG < 41bp 0.759742363320729 0.520967171533622 0.69960207 0.72620606 prediction 0.477550383574215 Functional Loss - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4491798 chr19:4491801 nonsynonymous SNV 0.500 3 24 hm5C_associated_SNPs_69867 0 0 1 0 2 HDGFL2 chr19:4491761 3'AG 4491761 Downstream 41bp
chr19 4491801 4491801 1 + G A UCEC 4491798 + 4491778 4491818 41 GAAAGCAGCGGTCCGGGCGCCACGGAGGGGCCCTCTGGGGG GAAAGCAGCGGTCCGGGCGCCACAGAGGGGCCCTCTGGGGG < 41bp 0.759742363320729 0.520967171533622 0.69960207 0.72620606 prediction 0.477550383574215 Functional Loss - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4491798 chr19:4491801 nonsynonymous SNV 0.500 3 24 hm5C_associated_SNPs_69867 0 0 1 0 2 HDGFL2 chr19:4491832 5'GT 4491832 Upstream 32bp
chr1 17298098 17298098 1 + C T rs368707716 17298096 + 17298076 17298116 41 GACTGAGCGCACCCTGGAGGCTCGGGAGCGGGCCCACCGCC GACTGAGCGCACCCTGGAGGCTTGGGAGCGGGCCCACCGCC < 41bp 0.759273117933483 0.520498567490449 0.83112276 0.8408638 prediction 0.477549100886067 Functional Loss - CROCC ENSG00000058453 CDS Human protein_coding chr1:17298096 chr1:17298098 nonsynonymous SNV 0.970 3 23 hm5C_associated_SNPs_69868 0 0 0 0 1 CROCC chr1:17298142 5'GT 17298142 Upstream 45bp
chr11 209505 209505 1 + C T UCEC 209503 + 209483 209523 41 TCCGAATCCTGTCCCGGGACCGCAACTGCCTGGACCCGTTC TCCGAATCCTGTCCCGGGACCGTAACTGCCTGGACCCGTTC < 41bp 0.738772882875185 0.467180841615373 0.07002923 0.030749679 prediction 0.47754576575037 Functional Loss - RIC8A ENSG00000177963 CDS Human protein_coding chr11:209503 chr11:209505 synonymous SNV . 0 23 hm5C_associated_SNPs_69869 0 0 0 0 1 RIC8A chr11:209407 3'AG 209407 Downstream 99bp
chr12 10163381 10163381 1 + C T rs11833101 10163379 + 10163359 10163399 41 ATGTCTGAAGAAGTGACCTACGCGACACTCACATTTCAGGA ATGTCTGAAGAAGTGACCTACGTGACACTCACATTTCAGGA < 41bp 0.782053770691272 0.543281710570657 0.034172207 0.018832535 prediction 0.477544120241231 Functional Loss - CLEC12B ENSG00000256660 CDS Human protein_coding chr12:10163379 chr12:10163381 nonsynonymous SNV 0.395 0 23 hm5C_associated_SNPs_69870 0 0 0 2 1 CLEC12B chr12:10163449 5'GT 10163449 Upstream 69bp
chr9 124519371 124519371 1 + G A STAD 124519368 + 124519348 124519388 41 CCAGCAGTGCGGTGGAGGCGCTGGACCTCAGCATGGAGGAA CCAGCAGTGCGGTGGAGGCGCTGAACCTCAGCATGGAGGAA < 41bp 0.738769500299319 0.4904558283969 0.40835756 0.49185082 prediction 0.477539000598637 Functional Loss - DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124519368 chr9:124519371 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_69872 0 0 1 0 2 DAB2IP chr9:124519292 3'AG 124519292 Downstream 80bp
chr9 124519371 124519371 1 + G A STAD 124519368 + 124519348 124519388 41 CCAGCAGTGCGGTGGAGGCGCTGGACCTCAGCATGGAGGAA CCAGCAGTGCGGTGGAGGCGCTGAACCTCAGCATGGAGGAA < 41bp 0.738769500299319 0.4904558283969 0.40835756 0.49185082 prediction 0.477539000598637 Functional Loss - DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124519368 chr9:124519371 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_69872 0 0 1 0 2 DAB2IP chr9:124519445 5'GT 124519445 Upstream 75bp
chr5 10258573 10258573 1 + G T LUAD 10258570 + 10258550 10258590 41 AACCAAAAACAAAGCATAAGCTGGATGTGACCTCTGTCGAA AACCAAAAACAAAGCATAAGCTGTATGTGACCTCTGTCGAA < 41bp 0.916115980265572 0.677348977602289 0.34347257 0.093583375 prediction 0.477534005326564 Functional Loss - CCT5 ENSG00000150753 CDS Human protein_coding chr5:10258570 chr5:10258573 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_69874 0 0 1 0 2 CCT5 chr5:10258498 3'AG 10258498 Downstream 76bp
chr5 10258573 10258573 1 + G T LUAD 10258570 + 10258550 10258590 41 AACCAAAAACAAAGCATAAGCTGGATGTGACCTCTGTCGAA AACCAAAAACAAAGCATAAGCTGTATGTGACCTCTGTCGAA < 41bp 0.916115980265572 0.677348977602289 0.34347257 0.093583375 prediction 0.477534005326564 Functional Loss - CCT5 ENSG00000150753 CDS Human protein_coding chr5:10258570 chr5:10258573 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_69874 0 0 1 0 2 CCT5 chr5:10258647 5'GT 10258647 Upstream 75bp
chr19 10394764 10394764 1 + G A rs35956512 10394761 + 10394741 10394781 41 CCCCGGGTCCTAGAGGTGGACACGCAGGGGACCGTGGTCTG CCCCGGGTCCTAGAGGTGGACACACAGGGGACCGTGGTCTG < 41bp 0.751807677191321 0.513040843737735 0.102391124 0.066435546 prediction 0.477533666907172 Functional Loss - ICAM1 ENSG00000090339 CDS Human protein_coding chr19:10394761 chr19:10394764 synonymous SNV . 0 24 hm5C_associated_SNPs_69875 0 0 1 0 1 ICAM1 chr19:10394709 3'AG 10394709 Downstream 56bp
chr1 100741239 100741239 1 + G T UCEC 100741236 + 100741216 100741256 41 ATGTTAACATCCAGCCTGTTCAAGAACCTAAAGACCAAGCA ATGTTAACATCCAGCCTGTTCAATAACCTAAAGACCAAGCA < 41bp 0.738765441328077 0.359361342552105 0.059901297 0.054257482 prediction 0.477530882656154 Functional Loss - RTCA ENSG00000137996 CDS Human protein_coding chr1:100741236 chr1:100741239 stopgain 0.904 1 24 hm5C_associated_SNPs_69877 0 0 1 0 2 RTCA chr1:100741155 3'AG 100741155 Downstream 85bp
chr1 100741239 100741239 1 + G T UCEC 100741236 + 100741216 100741256 41 ATGTTAACATCCAGCCTGTTCAAGAACCTAAAGACCAAGCA ATGTTAACATCCAGCCTGTTCAATAACCTAAAGACCAAGCA < 41bp 0.738765441328077 0.359361342552105 0.059901297 0.054257482 prediction 0.477530882656154 Functional Loss - RTCA ENSG00000137996 CDS Human protein_coding chr1:100741236 chr1:100741239 stopgain 0.904 1 24 hm5C_associated_SNPs_69877 0 0 1 0 2 RTCA chr1:100741279 5'GT 100741279 Upstream 41bp
chr1 1420477 1420477 1 + C T LUAD 1420475 + 1420455 1420495 41 CACTGGCCGCTTCATCGAGGCTCGGCTGGGGAAGCCGTCCC CACTGGCCGCTTCATCGAGGCTTGGCTGGGGAAGCCGTCCC < 41bp 0.800964402116037 0.56220082172617 0.30501395 0.32465452 prediction 0.477527160779732 Functional Loss - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1420475 chr1:1420477 nonsynonymous SNV 0.000 5 23 hm5C_associated_SNPs_69878 0 0 1 0 2 ATAD3B chr1:1420396 3'AG 1420396 Downstream 82bp
chr1 1420477 1420477 1 + C T LUAD 1420475 + 1420455 1420495 41 CACTGGCCGCTTCATCGAGGCTCGGCTGGGGAAGCCGTCCC CACTGGCCGCTTCATCGAGGCTTGGCTGGGGAAGCCGTCCC < 41bp 0.800964402116037 0.56220082172617 0.30501395 0.32465452 prediction 0.477527160779732 Functional Loss - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1420475 chr1:1420477 nonsynonymous SNV 0.000 5 23 hm5C_associated_SNPs_69878 0 0 1 0 2 ATAD3B chr1:1420551 5'GT 1420551 Upstream 75bp
chr2 85536168 85536168 1 + G T LUSC 85536165 + 85536145 85536185 41 CCCCTAGGTGCCCTGGCCTCCAAGAGCAAGAAGCCATGTGT CCCCTAGGTGCCCTGGCCTCCAATAGCAAGAAGCCATGTGT < 41bp 0.738759473446877 0.349422364517322 0.6923108 0.24305639 prediction 0.477518946893754 Functional Loss - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85536165 chr2:85536168 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_69880 0 0 0 0 1 TCF7L1 chr2:85536152 3'AG 85536152 Downstream 17bp
chr1 226026435 226026435 1 + G A LGG 226026432 + 226026412 226026452 41 CGAAGCCCTTGCTGATGGTGCACGGCTGGCCCGGCTCTTTC CGAAGCCCTTGCTGATGGTGCACAGCTGGCCCGGCTCTTTC < 41bp 0.775372769093572 0.536618988559685 0.24335614 0.08030224 prediction 0.477507561067774 Functional Loss - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226026432 chr1:226026435 nonsynonymous SNV 0.977 4 24 hm5C_associated_SNPs_69881 0 0 1 0 1 EPHX1 chr1:226026355 3'AG 226026355 Downstream 81bp
chr15 27772638 27772638 1 + C T COAD 27772636 + 27772616 27772656 41 CATCGCCAGGAAGTCCTTGCCACGCGTGTCCTACGTGACCG CATCGCCAGGAAGTCCTTGCCATGCGTGTCCTACGTGACCG < 41bp 0.738753530325066 0.479068455518662 0.8317324 0.6506866 prediction 0.477507060650132 Functional Loss - GABRG3 ENSG00000182256 CDS Human protein_coding chr15:27772636 chr15:27772638 nonsynonymous SNV 0.009 4 23 hm5C_associated_SNPs_69882 0 0 0 0 1 GABRG3 chr15:27772579 3'AG 27772579 Downstream 60bp
chr7 128850354 128850354 1 + G A BLCA 128850351 + 128850331 128850371 41 ATGAGCACCTGGGTCTGGACCAAGGCCACGCTGCTCATCTG ATGAGCACCTGGGTCTGGACCAAAGCCACGCTGCTCATCTG < 41bp 0.764235363740515 0.525482951441123 0.8855206 0.8102366 prediction 0.477504824598785 Functional Loss - SMO ENSG00000128602 CDS Human protein_coding chr7:128850351 chr7:128850354 synonymous SNV . 0 24 hm5C_associated_SNPs_69883 0 0 1 0 1 SMO chr7:128850389 5'GT 128850389 Upstream 36bp
chrX 134995028 134995028 1 + G T UCEC 134995026 + 134995006 134995046 41 ATAGATTCCCACTGCCATCTCAGAAAAGTTAAGCACATGAG ATAGATTCCCACTGCCATCTCATAAAAGTTAAGCACATGAG < 41bp 0.816648348687372 0.577896743983336 0.1941674 0.05043304 prediction 0.477503209408072 Functional Loss - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134995026 chrX:134995028 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_69884 0 0 0 1 1 SAGE1 chrX:134994957 3'AG 134994957 Downstream 72bp
chr11 60561549 60561549 1 + G A rs150419681 60561546 + 60561526 60561566 41 CTGGAGAGCCCATTTGAGTCCCCGATCTGGAGAATGTACCC CTGGAGAGCCCATTTGAGTCCCCAATCTGGAGAATGTACCC < 41bp 0.738749984532388 0.497400043951923 0.046409458 0.14387688 prediction 0.477499969064777 Functional Loss - MS4A10 ENSG00000172689 CDS Human protein_coding chr11:60561546 chr11:60561549 synonymous SNV . 0 24 hm5C_associated_SNPs_69886 0 0 1 0 1 MS4A10 chr11:60561576 5'GT 60561576 Upstream 28bp
chr11 60561548 60561548 1 + C T UCEC 60561546 + 60561526 60561566 41 CTGGAGAGCCCATTTGAGTCCCCGATCTGGAGAATGTACCC CTGGAGAGCCCATTTGAGTCCCTGATCTGGAGAATGTACCC < 41bp 0.738749984532388 0.461136340815284 0.046409458 0.0632481 prediction 0.477499969064777 Functional Loss - MS4A10 ENSG00000172689 CDS Human protein_coding chr11:60561546 chr11:60561548 nonsynonymous SNV 0.005 0 23 hm5C_associated_SNPs_69887 0 0 1 0 1 MS4A10 chr11:60561576 5'GT 60561576 Upstream 29bp
chr6 167708183 167708183 1 + G T SARC 167708181 + 167708161 167708201 41 TCCGTGGGCAACTTCTTCGCCAGCTGGTACGCAGCCACCAC TCCGTGGGCAACTTCTTCGCCATCTGGTACGCAGCCACCAC < 41bp 0.738738543267409 0.386453878272499 0.574948 0.13083935 prediction 0.477477086534817 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167708181 chr6:167708183 nonsynonymous SNV 0.930 1 23 hm5C_associated_SNPs_69890 0 0 1 0 1 UNC93A chr6:167708186 5'GT 167708186 Upstream 4bp
chr14 24534900 24534900 1 + G A STAD 24534897 + 24534877 24534917 41 CAGCACAGCAGCCAAGGGTTCACGGTGTTGCCCTTCCCGGG CAGCACAGCAGCCAAGGGTTCACAGTGTTGCCCTTCCCGGG < 41bp 0.73873849565126 0.495808824191429 0.80411184 0.2823429 prediction 0.477476991302519 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24534897 chr14:24534900 nonsynonymous SNV 0.920 3 24 hm5C_associated_SNPs_69891 0 0 0 0 2 CARMIL3 chr14:24534831 3'AG 24534831 Downstream 70bp
chr14 24534900 24534900 1 + G A STAD 24534897 + 24534877 24534917 41 CAGCACAGCAGCCAAGGGTTCACGGTGTTGCCCTTCCCGGG CAGCACAGCAGCCAAGGGTTCACAGTGTTGCCCTTCCCGGG < 41bp 0.73873849565126 0.495808824191429 0.80411184 0.2823429 prediction 0.477476991302519 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24534897 chr14:24534900 nonsynonymous SNV 0.920 3 24 hm5C_associated_SNPs_69891 0 0 0 0 2 CARMIL3 chr14:24534959 5'GT 24534959 Upstream 60bp
chr14 24534899 24534899 1 + C T UCEC 24534897 + 24534877 24534917 41 CAGCACAGCAGCCAAGGGTTCACGGTGTTGCCCTTCCCGGG CAGCACAGCAGCCAAGGGTTCATGGTGTTGCCCTTCCCGGG < 41bp 0.73873849565126 0.47786249976237 0.80411184 0.86266136 prediction 0.477476991302519 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24534897 chr14:24534899 synonymous SNV . 0 23 hm5C_associated_SNPs_69892 0 0 0 0 2 CARMIL3 chr14:24534831 3'AG 24534831 Downstream 69bp
chr14 24534899 24534899 1 + C T UCEC 24534897 + 24534877 24534917 41 CAGCACAGCAGCCAAGGGTTCACGGTGTTGCCCTTCCCGGG CAGCACAGCAGCCAAGGGTTCATGGTGTTGCCCTTCCCGGG < 41bp 0.73873849565126 0.47786249976237 0.80411184 0.86266136 prediction 0.477476991302519 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24534897 chr14:24534899 synonymous SNV . 0 23 hm5C_associated_SNPs_69892 0 0 0 0 2 CARMIL3 chr14:24534959 5'GT 24534959 Upstream 61bp
chr16 68732183 68732183 1 + G A UCEC 68732180 + 68732160 68732200 41 GAGGGCAGCGGCTCCGACGCCGCGTCCCTGAGCTCCCTCAC GAGGGCAGCGGCTCCGACGCCGCATCCCTGAGCTCCCTCAC < 41bp 0.747430999982972 0.508694906958663 0.07550484 0.031656325 prediction 0.477472186048617 Functional Loss - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68732180 chr16:68732183 synonymous SNV . 0 24 hm5C_associated_SNPs_69893 0 0 0 0 1 CDH3 chr16:68732094 3'AG 68732094 Downstream 90bp
chr2 119752006 119752006 1 + G A rs61732823 119752003 + 119751983 119752023 41 GATAATGTTCAGTGTCGGGGCACGGAGAGTACCCTGTGGAG GATAATGTTCAGTGTCGGGGCACAGAGAGTACCCTGTGGAG < 41bp 0.763103361163849 0.524369367462625 0.6150616 0.32746106 prediction 0.477467987402449 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119752003 chr2:119752006 synonymous SNV . 0 24 hm5C_associated_SNPs_69896 0 0 0 0 1 MARCO chr2:119751963 3'AG 119751963 Downstream 44bp
chr19 6531261 6531261 1 + G C rs548530723 6531257 + 6531237 6531277 41 TCCGCGGCCAGCCCGAGACTCCGCGAGGGTCCCGAGCTTTC TCCGCGGCCAGCCCGAGACTCCGCCAGGGTCCCGAGCTTTC < 41bp 0.738730446838948 0.448661826974341 0.4372635 0.07386306 prediction 0.477460893677895 Functional Loss - TNFSF9 ENSG00000125657 CDS Human protein_coding chr19:6531257 chr19:6531261 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_69897 0 0 1 0 1 TNFSF9 chr19:6531314 5'GT 6531314 Upstream 54bp
chr11 63987045 63987045 1 + G A UCEC 63987042 + 63987022 63987062 41 CGGGGAGGTGGGGGAGCCGGCTGGCACAGACCCAGGGCTGG CGGGGAGGTGGGGGAGCCGGCTGACACAGACCCAGGGCTGG < 41bp 0.738729494656384 0.485581790605325 0.43069282 0.36002225 prediction 0.477458989312768 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63987042 chr11:63987045 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_69898 0 0 1 0 2 FERMT3 chr11:63986996 3'AG 63986996 Downstream 50bp
chr11 63987045 63987045 1 + G A UCEC 63987042 + 63987022 63987062 41 CGGGGAGGTGGGGGAGCCGGCTGGCACAGACCCAGGGCTGG CGGGGAGGTGGGGGAGCCGGCTGACACAGACCCAGGGCTGG < 41bp 0.738729494656384 0.485581790605325 0.43069282 0.36002225 prediction 0.477458989312768 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63987042 chr11:63987045 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_69898 0 0 1 0 2 FERMT3 chr11:63987130 5'GT 63987130 Upstream 86bp
chr1 152659361 152659361 1 + C T HNSC 152659359 + 152659339 152659379 41 AGCAGCAGTGCCAGCCCCCTCCCAAGTGTCCTCCCAAGTGT AGCAGCAGTGCCAGCCCCCTCCTAAGTGTCCTCCCAAGTGT < 41bp 0.769595745399396 0.530866792501397 0.12242746 0.034298033 prediction 0.477457905795999 Functional Loss - LCE2B ENSG00000159455 CDS Human protein_coding chr1:152659359 chr1:152659361 synonymous SNV . 0 23 hm5C_associated_SNPs_69899 0 0 0 0 1 LCE2B chr1:152659300 3'AG 152659300 Downstream 62bp
chr1 156131214 156131214 1 + G C rs141021787 156131213 + 156131193 156131233 41 CCAGCTGCTCTGCACCCAGCCGGGGCAGCTGCCCTTCAACG CCAGCTGCTCTGCACCCAGCCCGGGCAGCTGCCCTTCAACG < 41bp 0.875040341890626 0.636313342369548 0.9369296 0.3348236 prediction 0.477453999042155 Functional Loss - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156131213 chr1:156131214 synonymous SNV . 0 22 hm5C_associated_SNPs_69900 0 0 0 0 2 SEMA4A chr1:156131137 3'AG 156131137 Downstream 78bp
chr1 156131214 156131214 1 + G C rs141021787 156131213 + 156131193 156131233 41 CCAGCTGCTCTGCACCCAGCCGGGGCAGCTGCCCTTCAACG CCAGCTGCTCTGCACCCAGCCCGGGCAGCTGCCCTTCAACG < 41bp 0.875040341890626 0.636313342369548 0.9369296 0.3348236 prediction 0.477453999042155 Functional Loss - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156131213 chr1:156131214 synonymous SNV . 0 22 hm5C_associated_SNPs_69900 0 0 0 0 2 SEMA4A chr1:156131309 5'GT 156131309 Upstream 96bp
chr11 63987936 63987936 1 + G A STAD 63987933 + 63987913 63987953 41 GCAGTATGCCCGCTGGATGGCTGGCTGCCGCCTGGCCTCCA GCAGTATGCCCGCTGGATGGCTGACTGCCGCCTGGCCTCCA < 41bp 0.738726813484796 0.498120363243673 0.1877358 0.17689684 prediction 0.477453626969592 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63987933 chr11:63987936 nonsynonymous SNV 0.973 1 24 hm5C_associated_SNPs_69901 0 0 1 0 1 FERMT3 chr11:63987908 3'AG 63987908 Downstream 29bp
chr17 38245491 38245491 1 + G C HNSC 38245490 + 38245470 38245510 41 CTGCTGTGTGTGGACAAGATCGAGAAGAGTCAGGAGGCGTA CTGCTGTGTGTGGACAAGATCCAGAAGAGTCAGGAGGCGTA < 41bp 0.842495918595227 0.603771098968461 0.91797864 0.76032317 prediction 0.477449639253532 Functional Loss - THRA ENSG00000126351 CDS Human protein_coding chr17:38245490 chr17:38245491 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_69903 0 0 0 0 1 THRA chr17:38245459 3'AG 38245459 Downstream 33bp
chr5 154193517 154193517 1 + G T HNSC 154193515 + 154193495 154193535 41 GGAGGTGGCGGCGGTGAGGGCAGGAAGCGGTGCCCCTCCCA GGAGGTGGCGGCGGTGAGGGCATGAAGCGGTGCCCCTCCCA < 41bp 0.888580235030332 0.649855731388729 0.90298134 0.83984685 prediction 0.477449007283206 Functional Loss - LARP1 ENSG00000155506 CDS Human protein_coding chr5:154193515 chr5:154193517 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_69904 0 0 1 0 1 LARP1 chr5:154193447 3'AG 154193447 Downstream 71bp
chr10 5011128 5011128 1 + T C GBM 5011127 + 5011107 5011147 41 GGGCTCAAGTACAAGCCTGTCTGCAACCAGGTGAGCACCCT GGGCTCAAGTACAAGCCTGTCCGCAACCAGGTGAGCACCCT < 41bp 0.738721489442024 0.490336763512031 0.90004766 0.4220963 prediction 0.477442978884049 Functional Loss - AKR1C1 ENSG00000187134 CDS Human protein_coding chr10:5011127 chr10:5011128 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_69905 0 0 0 0 1 AKR1C1 chr10:5011136 5'GT 5011136 Upstream 9bp
chr20 30408025 30408025 1 + T C LIHC 30408024 + 30408004 30408044 41 AAGCTCCGGATCCACCCACCCTGAAGAAAGATGCCAAAGCC AAGCTCCGGATCCACCCACCCCGAAGAAAGATGCCAAAGCC < 41bp 0.747194856339833 0.508474838353341 0.1910674 0.27515233 prediction 0.477440035972984 Functional Loss - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30408024 chr20:30408025 nonsynonymous SNV 0.549 0 22 hm5C_associated_SNPs_69907 0 0 0 0 1 MYLK2 chr20:30407929 3'AG 30407929 Downstream 97bp
chr2 131332120 131332120 1 + G T UCEC 131332117 + 131332097 131332137 41 TCTGGTTGGGGAATGGTCACCGAGGATGGTGAGCAGTGCAG TCTGGTTGGGGAATGGTCACCGATGATGGTGAGCAGTGCAG < 41bp 0.738715128313894 0.350576967634661 0.84425545 0.39952552 prediction 0.477430256627788 Functional Loss - LOC646743;TISP43 ENSG00000183292 CDS Human protein_coding chr2:131332117 chr2:131332120 nonsynonymous SNV 0.114 1 24 hm5C_associated_SNPs_69912 0 0 0 0 1 LOC646743;TISP43 chr2:131332124 5'GT 131332124 Upstream 5bp
chr15 80883951 80883951 1 + C T BLCA 80883949 + 80883929 80883969 41 GGGCAGTTCCAAGGGCGGCCCTCGGAAGTCTGGTCGCAGTG GGGCAGTTCCAAGGGCGGCCCTTGGAAGTCTGGTCGCAGTG < 41bp 0.738714353174472 0.448929351624414 0.22227731 0.1803503 prediction 0.477428706348944 Functional Loss - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80883949 chr15:80883951 nonsynonymous SNV 0.980 3 23 hm5C_associated_SNPs_69913 0 0 0 0 2 ARNT2 chr15:80883909 3'AG 80883909 Downstream 43bp
chr15 80883951 80883951 1 + C T BLCA 80883949 + 80883929 80883969 41 GGGCAGTTCCAAGGGCGGCCCTCGGAAGTCTGGTCGCAGTG GGGCAGTTCCAAGGGCGGCCCTTGGAAGTCTGGTCGCAGTG < 41bp 0.738714353174472 0.448929351624414 0.22227731 0.1803503 prediction 0.477428706348944 Functional Loss - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80883949 chr15:80883951 nonsynonymous SNV 0.980 3 23 hm5C_associated_SNPs_69913 0 0 0 0 2 ARNT2 chr15:80884045 5'GT 80884045 Upstream 95bp
chr15 80883952 80883952 1 + G A GBM 80883949 + 80883929 80883969 41 GGGCAGTTCCAAGGGCGGCCCTCGGAAGTCTGGTCGCAGTG GGGCAGTTCCAAGGGCGGCCCTCAGAAGTCTGGTCGCAGTG < 41bp 0.738714353174472 0.493257969688588 0.22227731 0.11148003 prediction 0.477428706348944 Functional Loss - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80883949 chr15:80883952 synonymous SNV . 0 24 hm5C_associated_SNPs_69914 0 0 0 0 2 ARNT2 chr15:80883909 3'AG 80883909 Downstream 44bp
chr15 80883952 80883952 1 + G A GBM 80883949 + 80883929 80883969 41 GGGCAGTTCCAAGGGCGGCCCTCGGAAGTCTGGTCGCAGTG GGGCAGTTCCAAGGGCGGCCCTCAGAAGTCTGGTCGCAGTG < 41bp 0.738714353174472 0.493257969688588 0.22227731 0.11148003 prediction 0.477428706348944 Functional Loss - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80883949 chr15:80883952 synonymous SNV . 0 24 hm5C_associated_SNPs_69914 0 0 0 0 2 ARNT2 chr15:80884045 5'GT 80884045 Upstream 94bp
chr19 58904472 58904472 1 + G A STAD 58904469 + 58904449 58904489 41 TCACTAACTCCATGATGATGCACGGCCGCAACAACGGCAAG TCACTAACTCCATGATGATGCACAGCCGCAACAACGGCAAG < 41bp 0.738714141834009 0.499174082095211 0.1095877 0.035951883 prediction 0.477428283668017 Functional Loss - RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904469 chr19:58904472 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_69915 0 0 1 0 1 RPS5 chr19:58904552 5'GT 58904552 Upstream 81bp
chr19 58904471 58904471 1 + C T UCEC 58904469 + 58904449 58904489 41 TCACTAACTCCATGATGATGCACGGCCGCAACAACGGCAAG TCACTAACTCCATGATGATGCATGGCCGCAACAACGGCAAG < 41bp 0.738714141834009 0.482005590108074 0.1095877 0.11282867 prediction 0.477428283668017 Functional Loss - RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904469 chr19:58904471 synonymous SNV . 0 23 hm5C_associated_SNPs_69916 0 0 1 0 1 RPS5 chr19:58904552 5'GT 58904552 Upstream 82bp
chr3 11076324 11076324 1 + G A SKCM 11076321 + 11076301 11076341 41 TGGCTGATGGCTCTGTCTTCCATGGTCCTCATCCCCGGGTA TGGCTGATGGCTCTGTCTTCCATAGTCCTCATCCCCGGGTA < 41bp 0.738710603216597 0.492679128175128 0.29758596 0.21762416 prediction 0.477421206433194 Functional Loss - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11076321 chr3:11076324 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_69919 0 0 0 0 1 SLC6A1 chr3:11076384 5'GT 11076384 Upstream 61bp
chr11 111154900 111154900 1 + C T COAD 111154898 + 111154878 111154918 41 TTTTCAAATGACGTCTACACCTCCAGCGTGGGGAAGCCGTT TTTTCAAATGACGTCTACACCTTCAGCGTGGGGAAGCCGTT < 41bp 0.845482211078577 0.606773343077804 0.93273246 0.015352637 prediction 0.477417736001547 Functional Loss - C11orf53 ENSG00000150750 CDS Human protein_coding chr11:111154898 chr11:111154900 nonsynonymous SNV 0.906 3 23 hm5C_associated_SNPs_69921 0 0 0 0 1 C11orf53 chr11:111154801 3'AG 111154801 Downstream 100bp
chr1 150307469 150307469 1 + T C rs587699756 150307468 + 150307448 150307488 41 CCTGGATGAGCAAGGGCGCACTGTAGATGCAACAGGCAAGG CCTGGATGAGCAAGGGCGCACCGTAGATGCAACAGGCAAGG < 41bp 0.738708671897359 0.485701330221672 0.2077002 0.2696339 prediction 0.477417343794718 Functional Loss - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150307468 chr1:150307469 synonymous SNV . 0 22 hm5C_associated_SNPs_69922 0 0 1 1 1 PRPF3 chr1:150307406 3'AG 150307406 Downstream 64bp
chr1 16356971 16356971 1 + C T rs375233250 16356969 + 16356949 16356989 41 CCGGCAGGGGCTGCAGCCTTCTCAGGGGCTGTGACCCACAC CCGGCAGGGGCTGCAGCCTTCTTAGGGGCTGTGACCCACAC < 41bp 0.77743585947682 0.538731108148692 0.1982632 0.28225267 prediction 0.477409502656256 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16356969 chr1:16356971 nonsynonymous SNV 0.971 5 23 hm5C_associated_SNPs_69926 0 0 0 0 1 CLCNKA chr1:16356956 3'AG 16356956 Downstream 16bp
chr2 241533448 241533448 1 + G T COAD 241533445 + 241533425 241533465 41 CCTGGGGCCGGCGGTGCTGGCAGGGGCTCTGGAGAGAGGGG CCTGGGGCCGGCGGTGCTGGCAGTGGCTCTGGAGAGAGGGG < 41bp 0.920727684741344 0.682034147162991 0.90214545 0.5046375 prediction 0.477387075156708 Functional Loss - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241533445 chr2:241533448 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_69933 0 0 1 0 1 CAPN10 chr2:241533464 5'GT 241533464 Upstream 17bp
chr6 4892576 4892576 1 + T C rs543325062 4892575 + 4892555 4892595 41 TCAGGTGCCCGGCCCTGTGACTGCAGCCATGGCCACAGGCT TCAGGTGCCCGGCCCTGTGACCGCAGCCATGGCCACAGGCT < 41bp 0.774872149909668 0.536184157963446 0.2558973 0.29702356 prediction 0.477375983892443 Functional Loss - CDYL ENSG00000153046 CDS Human protein_coding chr6:4892575 chr6:4892576 synonymous SNV . 0 22 hm5C_associated_SNPs_69935 0 0 1 0 1 CDYL chr6:4892613 5'GT 4892613 Upstream 38bp
chr8 67049359 67049359 1 + C T ACC 67049357 + 67049337 67049377 41 TCAGTGATGGCATCGCCATCCTCGTGGGCAGCAACGATCGA TCAGTGATGGCATCGCCATCCTTGTGGGCAGCAACGATCGA < 41bp 0.738687320082408 0.447699447744962 0.10481128 0.0692144 prediction 0.477374640164817 Functional Loss - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67049357 chr8:67049359 synonymous SNV . 0 23 hm5C_associated_SNPs_69936 0 0 0 0 2 TRIM55 chr8:67049330 3'AG 67049330 Downstream 30bp
chr8 67049359 67049359 1 + C T ACC 67049357 + 67049337 67049377 41 TCAGTGATGGCATCGCCATCCTCGTGGGCAGCAACGATCGA TCAGTGATGGCATCGCCATCCTTGTGGGCAGCAACGATCGA < 41bp 0.738687320082408 0.447699447744962 0.10481128 0.0692144 prediction 0.477374640164817 Functional Loss - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67049357 chr8:67049359 synonymous SNV . 0 23 hm5C_associated_SNPs_69936 0 0 0 0 2 TRIM55 chr8:67049425 5'GT 67049425 Upstream 67bp
chr7 152522171 152522171 1 + G T UCEC 152522169 + 152522149 152522189 41 ATGTTGTTGATGAAGTAATACAGAACTGCCCCATCGATGTG ATGTTGTTGATGAAGTAATACATAACTGCCCCATCGATGTG < 41bp 0.738684396391612 0.39218093181313 0.21073523 0.15473053 prediction 0.477368792783224 Functional Loss - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152522169 chr7:152522171 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_69939 0 0 1 0 2 ACTR3B chr7:152522115 3'AG 152522115 Downstream 57bp
chr7 152522171 152522171 1 + G T UCEC 152522169 + 152522149 152522189 41 ATGTTGTTGATGAAGTAATACAGAACTGCCCCATCGATGTG ATGTTGTTGATGAAGTAATACATAACTGCCCCATCGATGTG < 41bp 0.738684396391612 0.39218093181313 0.21073523 0.15473053 prediction 0.477368792783224 Functional Loss - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152522169 chr7:152522171 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_69939 0 0 1 0 2 ACTR3B chr7:152522207 5'GT 152522207 Upstream 37bp
chr12 27863869 27863869 1 + G T SKCM 27863867 + 27863847 27863887 41 CTGCCGTCTACTCGGCCACTCCGGTCCCGACACCTAGCCTG CTGCCGTCTACTCGGCCACTCCTGTCCCGACACCTAGCCTG < 41bp 0.73868246043005 0.377988219228518 0.35663977 0.23026925 prediction 0.4773649208601 Functional Loss - MRPS35 ENSG00000061794 CDS Human protein_coding chr12:27863867 chr12:27863869 synonymous SNV . 0 23 hm5C_associated_SNPs_69940 0 0 1 0 1 MRPS35 chr12:27863888 5'GT 27863888 Upstream 20bp
chr2 242755707 242755707 1 + G A GBM 242755704 + 242755684 242755724 41 GGGGGTCCCTCGTACCCCTTCACGGACAGTGCTCTTCGAGC GGGGGTCCCTCGTACCCCTTCACAGACAGTGCTCTTCGAGC < 41bp 0.766027632132425 0.527350516594171 0.78594637 0.30789515 prediction 0.477354231076507 Functional Loss - NEU4 ENSG00000204099 CDS Human protein_coding chr2:242755704 chr2:242755707 nonsynonymous SNV 0.108 2 24 hm5C_associated_SNPs_69943 0 0 0 0 2 NEU4 chr2:242755676 3'AG 242755676 Downstream 32bp
chr2 242755707 242755707 1 + G A GBM 242755704 + 242755684 242755724 41 GGGGGTCCCTCGTACCCCTTCACGGACAGTGCTCTTCGAGC GGGGGTCCCTCGTACCCCTTCACAGACAGTGCTCTTCGAGC < 41bp 0.766027632132425 0.527350516594171 0.78594637 0.30789515 prediction 0.477354231076507 Functional Loss - NEU4 ENSG00000204099 CDS Human protein_coding chr2:242755704 chr2:242755707 nonsynonymous SNV 0.108 2 24 hm5C_associated_SNPs_69943 0 0 0 0 2 NEU4 chr2:242755679 3'AG 242755679 Downstream 29bp
chr17 6943112 6943112 1 + C T UCEC 6943110 + 6943090 6943130 41 CGGGATGTGACAGGCAACTACACGGCTTCTTTTGTGGTGGC CGGGATGTGACAGGCAACTACATGGCTTCTTTTGTGGTGGC < 41bp 0.738675017151113 0.479949928753319 0.8530489 0.59968024 prediction 0.477350034302227 Functional Loss - SLC16A13 ENSG00000174327 CDS Human protein_coding chr17:6943110 chr17:6943112 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_69945 0 0 1 0 1 SLC16A13 chr17:6943082 3'AG 6943082 Downstream 31bp
chr2 29225459 29225459 1 + G A COAD 29225456 + 29225436 29225476 41 TCCCCTGCACAGCACCATCCCCCGAGCCACCTCTCAGAGGC TCCCCTGCACAGCACCATCCCCCAAGCCACCTCTCAGAGGC < 41bp 0.771214760791304 0.532539905904707 0.050870985 0.031820267 prediction 0.477349709773194 Functional Loss - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29225456 chr2:29225459 nonsynonymous SNV 0.008 2 24 hm5C_associated_SNPs_69946 0 0 0 0 1 TOGARAM2 chr2:29225402 3'AG 29225402 Downstream 58bp
chrX 151909147 151909147 1 + G T UCEC 151909144 + 151909124 151909164 41 CTGTTGGCTTTCCAGGTTCCCAAGACAACCCAAAAGGGAAA CTGTTGGCTTTCCAGGTTCCCAATACAACCCAAAAGGGAAA < 41bp 0.906496460627702 0.667826023376261 0.2746762 0.0792214 prediction 0.477340874502882 Functional Loss - CSAG1 ENSG00000198930 CDS Human protein_coding chrX:151909144 chrX:151909147 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_69949 0 0 0 0 1 CSAG1 chrX:151909139 3'AG 151909139 Downstream 9bp
chr10 3155704 3155704 1 + G A UCEC 3155701 + 3155681 3155721 41 GATGGCTTTGACGGCTTCGCCAAGGGCCAGGTGAGTCACCC GATGGCTTTGACGGCTTCGCCAAAGGCCAGGTGAGTCACCC < 41bp 0.738655894727917 0.499078136040521 0.8942269 0.82972085 prediction 0.477311789455835 Functional Loss - PFKP ENSG00000067057 CDS Human protein_coding chr10:3155701 chr10:3155704 synonymous SNV . 0 24 hm5C_associated_SNPs_69952 0 0 0 0 1 PFKP chr10:3155710 5'GT 3155710 Upstream 7bp
chr4 3447795 3447795 1 + C T SKCM 3447793 + 3447773 3447813 41 CCTCACCAGAGTCCAACTGTCACCGGATCTCCTGGCGACCC CCTCACCAGAGTCCAACTGTCATCGGATCTCCTGGCGACCC < 41bp 0.738654230091195 0.494941087464407 0.8362924 0.8548475 prediction 0.477308460182389 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3447793 chr4:3447795 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_69953 0 0 1 0 1 HGFAC chr4:3447769 3'AG 3447769 Downstream 27bp
chr19 48525436 48525436 1 + C T GBM 48525434 + 48525414 48525454 41 TTCTGCTTCCTAGGAATTTCCGCGTTGGTCCCTGGCTTTCC TTCTGCTTCCTAGGAATTTCCGTGTTGGTCCCTGGCTTTCC < 41bp 0.738652732427124 0.474409939256116 0.12976983 0.05962777 prediction 0.477305464854249 Functional Loss - ELSPBP1 ENSG00000169393 CDS Human protein_coding chr19:48525434 chr19:48525436 nonsynonymous SNV 0.006 0 23 hm5C_associated_SNPs_69954 0 0 0 0 1 ELSPBP1 chr19:48525427 3'AG 48525427 Downstream 10bp
chr12 132404022 132404022 1 + C T COAD 132404020 + 132404000 132404040 41 CTGCCTGCCGCCCCCAGCTTCGCGGAACAGCTGGTGCTGTA CTGCCTGCCGCCCCCAGCTTCGTGGAACAGCTGGTGCTGTA < 41bp 0.784758263642693 0.546108421571572 0.8368999 0.8709386 prediction 0.477299684142241 Functional Loss - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132404020 chr12:132404022 nonsynonymous SNV 0.015 1 23 hm5C_associated_SNPs_69955 0 0 1 0 1 ULK1 chr12:132404017 3'AG 132404017 Downstream 6bp
chr6 97051520 97051520 1 + T C COAD 97051519 + 97051499 97051539 41 GCTCACTTTTACTGTCAATACTGCACAGCATCACTTCTTGG GCTCACTTTTACTGTCAATACCGCACAGCATCACTTCTTGG < 41bp 0.741752456773746 0.503109501105803 0.09869504 0.04020101 prediction 0.477285911335886 Functional Loss - FHL5 ENSG00000112214 CDS Human protein_coding chr6:97051519 chr6:97051520 nonsynonymous SNV 0.983 5 22 hm5C_associated_SNPs_69959 0 0 0 0 1 FHL5 chr6:97051478 3'AG 97051478 Downstream 43bp
chr2 64682545 64682545 1 + G T LUAD 64682542 + 64682522 64682562 41 TCAAGCGGACGTGTACTTCCCACGACTGGTAAATGATTTTG TCAAGCGGACGTGTACTTCCCACTACTGGTAAATGATTTTG < 41bp 0.90829181679073 0.669649446271391 0.05191195 0.08357534 prediction 0.477284741038678 Functional Loss - LGALSL ENSG00000119862 CDS Human protein_coding chr2:64682542 chr2:64682545 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_69960 0 0 1 0 2 LGALSL chr2:64682478 3'AG 64682478 Downstream 68bp
chr2 64682545 64682545 1 + G T LUAD 64682542 + 64682522 64682562 41 TCAAGCGGACGTGTACTTCCCACGACTGGTAAATGATTTTG TCAAGCGGACGTGTACTTCCCACTACTGGTAAATGATTTTG < 41bp 0.90829181679073 0.669649446271391 0.05191195 0.08357534 prediction 0.477284741038678 Functional Loss - LGALSL ENSG00000119862 CDS Human protein_coding chr2:64682542 chr2:64682545 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_69960 0 0 1 0 2 LGALSL chr2:64682549 5'GT 64682549 Upstream 5bp
chr1 26738039 26738039 1 + C T LUAD 26738037 + 26738017 26738057 41 ATGACCGCCCGCGCCGGGGTCGCGCTCGACCCCCCAGTGGA ATGACCGCCCGCGCCGGGGTCGTGCTCGACCCCCCAGTGGA < 41bp 0.738639214633687 0.478532427182574 0.22568804 0.26531565 prediction 0.477278429267375 Functional Loss - LIN28A ENSG00000131914 CDS Human protein_coding chr1:26738037 chr1:26738039 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_69962 0 0 0 0 1 LIN28A chr1:26738073 5'GT 26738073 Upstream 35bp
chr2 203817399 203817399 1 + C T UCEC 203817397 + 203817377 203817417 41 ACTTGTGGATGTGAATAGTCCTCGGGGTGAGTAACAACGGG ACTTGTGGATGTGAATAGTCCTTGGGGTGAGTAACAACGGG < 41bp 0.738638270888171 0.478312288394138 0.39307216 0.26008937 prediction 0.477276541776342 Functional Loss - CARF ENSG00000138380 CDS Human protein_coding chr2:203817397 chr2:203817399 nonsynonymous SNV 0.038 2 23 hm5C_associated_SNPs_69964 0 0 0 0 1 CARF chr2:203817402 5'GT 203817402 Upstream 4bp
chr6 10928675 10928675 1 + C T STAD 10928673 + 10928653 10928693 41 GTTCGGGGTCCCTGACTTCCCGCAACAACCTGTGAGTACAG GTTCGGGGTCCCTGACTTCCCGTAACAACCTGTGAGTACAG < 41bp 0.805944642848481 0.567319065417162 0.033129513 0.024912685 prediction 0.477251154862637 Functional Loss - SYCP2L ENSG00000153157 CDS Human protein_coding chr6:10928673 chr6:10928675 stopgain 0.045 0 23 hm5C_associated_SNPs_69969 0 0 0 0 2 SYCP2L chr6:10928636 3'AG 10928636 Downstream 40bp
chr6 10928675 10928675 1 + C T STAD 10928673 + 10928653 10928693 41 GTTCGGGGTCCCTGACTTCCCGCAACAACCTGTGAGTACAG GTTCGGGGTCCCTGACTTCCCGTAACAACCTGTGAGTACAG < 41bp 0.805944642848481 0.567319065417162 0.033129513 0.024912685 prediction 0.477251154862637 Functional Loss - SYCP2L ENSG00000153157 CDS Human protein_coding chr6:10928673 chr6:10928675 stopgain 0.045 0 23 hm5C_associated_SNPs_69969 0 0 0 0 2 SYCP2L chr6:10928683 5'GT 10928683 Upstream 9bp
chr2 162719465 162719465 1 + A C UCEC 162719464 + 162719444 162719484 41 TCCATGAGGCATTGATGAAACAGCATCATCATCAGAATCAG TCCATGAGGCATTGATGAAACCGCATCATCATCAGAATCAG < 41bp 0.738622676682627 0.499707015992614 0.016811907 0.024426073 prediction 0.477245353365255 Functional Loss - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162719464 chr2:162719465 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_69971 0 0 0 0 1 SLC4A10 chr2:162719384 3'AG 162719384 Downstream 82bp
chr1 1222500 1222500 1 + G A rs571695833 1222497 + 1222477 1222517 41 CCCCTCTCCCAGTGCAACAGCACGGGCGGCGACTGCTTTTA CCCCTCTCCCAGTGCAACAGCACAGGCGGCGACTGCTTTTA < 41bp 0.770844387291782 0.532228502230713 0.35755578 0.2426781 prediction 0.477231770122138 Functional Loss - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1222497 chr1:1222500 synonymous SNV . 0 24 hm5C_associated_SNPs_69972 0 0 0 0 1 SCNN1D chr1:1222489 3'AG 1222489 Downstream 12bp
chr1 202985216 202985216 1 + C T CESC 202985214 + 202985194 202985234 41 GAGCCATTTGCTGCTCGAATCTCCAAGAATCCAGCCATTCC GAGCCATTTGCTGCTCGAATCTTCAAGAATCCAGCCATTCC < 41bp 0.738614345046843 0.450486220147854 0.9615935 0.11439949 prediction 0.477228690093686 Functional Loss - TMEM183A;TMEM183B ENSG00000163444 CDS Human protein_coding chr1:202985214 chr1:202985216 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_69973 0 0 0 0 1 TMEM183A;TMEM183B chr1:202985268 5'GT 202985268 Upstream 53bp
chr1 183184690 183184690 1 + C T rs11586699 183184688 + 183184668 183184708 41 CTGCCAGGCTTCCACATGCTCACGGATGCGGGGTGCACCCA CTGCCAGGCTTCCACATGCTCATGGATGCGGGGTGCACCCA < 41bp 0.820112826994952 0.58150036819566 0.2218042 0.608017 prediction 0.477224917598584 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183184688 chr1:183184690 nonsynonymous SNV 0.507 3 23 hm5C_associated_SNPs_69974 1 0 0 0 1 LAMC2 chr1:183184723 5'GT 183184723 Upstream 34bp
chr3 126386092 126386092 1 + C T LGG 126386090 + 126386070 126386110 41 ATATCACCTGGATCACCAACCACCAGAACCCTTTCTCCTTT ATATCACCTGGATCACCAACCATCAGAACCCTTTCTCCTTT < 41bp 0.79502363608103 0.556416652699393 0.08193806 0.040953755 prediction 0.477213966763274 Functional Loss - NUP210P1 ENSG00000198284 ncRNA_exonic Human transcribed_processed_pseudogene chr3:126386090 chr3:126386092 . . 0 23 hm5C_associated_SNPs_69977 0 0 0 0 1 NUP210P1 chr3:126386191 5'GT 126386191 Upstream 100bp
chr16 70806020 70806020 1 - A G STAD 70806021 - 70806001 70806041 41 TAGCGGCATCAGTGTCTTCACTGCAGCCAGGTAAGTGGCTT TAGCGGCATCAGTGTCTTCACCGCAGCCAGGTAAGTGGCTT < 41bp 0.78307700397068 0.544475819144188 0.14828172 0.08897656 prediction 0.477202369652984 Functional Loss - VAC14 ENSG00000103043 CDS Human protein_coding chr16:70806021 chr16:70806020 synonymous SNV . 0 22 hm5C_associated_SNPs_69980 0 0 1 0 2 VAC14 chr16:70806012 5'GT 70806012 Upstream 9bp
chr16 70806020 70806020 1 - A G STAD 70806021 - 70806001 70806041 41 TAGCGGCATCAGTGTCTTCACTGCAGCCAGGTAAGTGGCTT TAGCGGCATCAGTGTCTTCACCGCAGCCAGGTAAGTGGCTT < 41bp 0.78307700397068 0.544475819144188 0.14828172 0.08897656 prediction 0.477202369652984 Functional Loss - VAC14 ENSG00000103043 CDS Human protein_coding chr16:70806021 chr16:70806020 synonymous SNV . 0 22 hm5C_associated_SNPs_69980 0 0 1 0 2 VAC14 chr16:70806075 3'AG 70806075 Downstream 56bp
chr14 34145490 34145490 1 + G C rs373628476 34145486 + 34145466 34145506 41 ACGTGGAGATGGCTGAGCAGCTGGGCATGAAGCTCCCCCCT ACGTGGAGATGGCTGAGCAGCTGGCCATGAAGCTCCCCCCT < 41bp 0.738600335365372 0.490476627507442 0.9068781 0.6486815 prediction 0.477200670730744 Functional Loss - NPAS3 ENSG00000151322 CDS Human protein_coding chr14:34145486 chr14:34145490 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_69981 0 0 0 0 1 NPAS3 chr14:34145417 3'AG 34145417 Downstream 74bp
chr14 105936295 105936295 1 + G A CESC 105936292 + 105936272 105936312 41 GGATGAACTGGATCGACGCCCCGGATGACGTGTTCTACATG GGATGAACTGGATCGACGCCCCGAATGACGTGTTCTACATG < 41bp 0.738594888503915 0.494961817299601 0.77761114 0.20319635 prediction 0.47718977700783 Functional Loss - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936292 chr14:105936295 nonsynonymous SNV 0.934 0 24 hm5C_associated_SNPs_69985 0 0 1 1 1 MTA1 chr14:105936329 5'GT 105936329 Upstream 35bp
chr8 79627472 79627472 1 + C T SKCM 79627470 + 79627450 79627490 41 TTATAGAGCTAATGTCAAACCCCGAAATTCCACACCACCTA TTATAGAGCTAATGTCAAACCCTGAAATTCCACACCACCTA < 41bp 0.832806161512448 0.594217248644423 0.0549908 0.05243212 prediction 0.47717782573605 Functional Loss - ZC2HC1A ENSG00000104427 CDS Human protein_coding chr8:79627470 chr8:79627472 stopgain 0.872 0 23 hm5C_associated_SNPs_69987 0 0 1 0 2 ZC2HC1A chr8:79627456 3'AG 79627456 Downstream 17bp
chr8 79627472 79627472 1 + C T SKCM 79627470 + 79627450 79627490 41 TTATAGAGCTAATGTCAAACCCCGAAATTCCACACCACCTA TTATAGAGCTAATGTCAAACCCTGAAATTCCACACCACCTA < 41bp 0.832806161512448 0.594217248644423 0.0549908 0.05243212 prediction 0.47717782573605 Functional Loss - ZC2HC1A ENSG00000104427 CDS Human protein_coding chr8:79627470 chr8:79627472 stopgain 0.872 0 23 hm5C_associated_SNPs_69987 0 0 1 0 2 ZC2HC1A chr8:79627563 5'GT 79627563 Upstream 92bp
chr7 73452049 73452049 1 + G T UCEC 73452046 + 73452026 73452066 41 TCCCTCTGCAGCGCTGGGGCCTGGAGGCAAACCTCTTAAGC TCCCTCTGCAGCGCTGGGGCCTGTAGGCAAACCTCTTAAGC < 41bp 0.738588747302425 0.381715484493302 0.39149204 0.2620076 prediction 0.47717749460485 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73452046 chr7:73452049 nonsynonymous SNV 0.480 3 24 hm5C_associated_SNPs_69988 0 0 0 0 2 ELN chr7:73452037 3'AG 73452037 Downstream 13bp
chr7 73452049 73452049 1 + G T UCEC 73452046 + 73452026 73452066 41 TCCCTCTGCAGCGCTGGGGCCTGGAGGCAAACCTCTTAAGC TCCCTCTGCAGCGCTGGGGCCTGTAGGCAAACCTCTTAAGC < 41bp 0.738588747302425 0.381715484493302 0.39149204 0.2620076 prediction 0.47717749460485 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73452046 chr7:73452049 nonsynonymous SNV 0.480 3 24 hm5C_associated_SNPs_69988 0 0 0 0 2 ELN chr7:73452069 5'GT 73452069 Upstream 21bp
chr14 20940628 20940628 1 + G A PAAD 20940625 + 20940605 20940645 41 CGGTGAAATCCCCAACTTTCCCCGAAGTACAGGTACTGGCA CGGTGAAATCCCCAACTTTCCCCAAAGTACAGGTACTGGCA < 41bp 0.739291507163809 0.500709358846174 0.43211645 0.08135557 prediction 0.477164296635269 Functional Loss - PNP ENSG00000198805 CDS Human protein_coding chr14:20940625 chr14:20940628 nonsynonymous SNV 0.639 0 24 hm5C_associated_SNPs_69989 0 0 1 0 1 PNP chr14:20940636 5'GT 20940636 Upstream 9bp
chr11 3423916 3423916 1 + C T SKCM 3423914 + 3423894 3423934 41 GGAGCGGGCTGGTGATGCGCCTCCGCGAGCGGCCAGCCCTG GGAGCGGGCTGGTGATGCGCCTTCGCGAGCGGCCAGCCCTG < 41bp 0.783377425064279 0.544798472638055 0.22716019 0.08111325 prediction 0.477157904852448 Functional Loss - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3423914 chr11:3423916 . . 0 23 hm5C_associated_SNPs_69991 0 0 0 0 2 TSSC2 chr11:3423843 3'AG 3423843 Downstream 74bp
chr11 3423916 3423916 1 + C T SKCM 3423914 + 3423894 3423934 41 GGAGCGGGCTGGTGATGCGCCTCCGCGAGCGGCCAGCCCTG GGAGCGGGCTGGTGATGCGCCTTCGCGAGCGGCCAGCCCTG < 41bp 0.783377425064279 0.544798472638055 0.22716019 0.08111325 prediction 0.477157904852448 Functional Loss - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3423914 chr11:3423916 . . 0 23 hm5C_associated_SNPs_69991 0 0 0 0 2 TSSC2 chr11:3423959 5'GT 3423959 Upstream 44bp
chr14 70235600 70235600 1 + C T BLCA 70235598 + 70235578 70235618 41 CCGTTTTAGTAGTCGCAGACCTCGAAATGATAGACGGTATG CCGTTTTAGTAGTCGCAGACCTTGAAATGATAGACGGTATG < 41bp 0.738578504732206 0.443474905623886 0.67300355 0.10924652 prediction 0.477157009464412 Functional Loss - SRSF5 ENSG00000100650 CDS Human protein_coding chr14:70235598 chr14:70235600 stopgain 1.000 0 23 hm5C_associated_SNPs_69993 0 0 1 0 1 SRSF5 chr14:70235613 5'GT 70235613 Upstream 14bp
chr7 112090830 112090830 1 + G C LUAD 112090826 + 112090806 112090846 41 AGGAGCAGCCGCAGCGACGGCGGCGACAGCAGGTAAGGGGT AGGAGCAGCCGCAGCGACGGCGGCCACAGCAGGTAAGGGGT < 41bp 0.834122475406732 0.595545238578381 0.85196185 0.83940804 prediction 0.477154473656703 Functional Loss - IFRD1 ENSG00000006652 CDS Human protein_coding chr7:112090826 chr7:112090830 synonymous SNV . 0 25 hm5C_associated_SNPs_69996 0 0 1 0 1 IFRD1 chr7:112090837 5'GT 112090837 Upstream 8bp
chr1 181018350 181018350 1 + C T UCEC 181018348 + 181018328 181018368 41 CCATGGATGGCAGAGAACCTCGCGCCTGATCACTGGGAGAG CCATGGATGGCAGAGAACCTCGTGCCTGATCACTGGGAGAG < 41bp 0.7951383286433 0.556561300440803 0.5359862 0.66482013 prediction 0.477154056404993 Functional Loss - MR1 ENSG00000153029 CDS Human protein_coding chr1:181018348 chr1:181018350 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_69997 0 0 1 0 1 MR1 chr1:181018448 5'GT 181018448 Upstream 99bp
chr1 230807342 230807342 1 + C T SKCM 230807340 + 230807320 230807360 41 AACTCCTGGAGTTTGTTCCTCACCATTGCCGCCTTCTTCGA AACTCCTGGAGTTTGTTCCTCATCATTGCCGCCTTCTTCGA < 41bp 0.851375927794743 0.612799932747852 0.043732643 0.08890647 prediction 0.477151990093781 Functional Loss - COG2 ENSG00000135775 CDS Human protein_coding chr1:230807340 chr1:230807342 synonymous SNV . 0 23 hm5C_associated_SNPs_69998 0 0 0 0 2 COG2 chr1:230807262 3'AG 230807262 Downstream 81bp
chr1 230807342 230807342 1 + C T SKCM 230807340 + 230807320 230807360 41 AACTCCTGGAGTTTGTTCCTCACCATTGCCGCCTTCTTCGA AACTCCTGGAGTTTGTTCCTCATCATTGCCGCCTTCTTCGA < 41bp 0.851375927794743 0.612799932747852 0.043732643 0.08890647 prediction 0.477151990093781 Functional Loss - COG2 ENSG00000135775 CDS Human protein_coding chr1:230807340 chr1:230807342 synonymous SNV . 0 23 hm5C_associated_SNPs_69998 0 0 0 0 2 COG2 chr1:230807386 5'GT 230807386 Upstream 45bp
chr1 3394482 3394482 1 + G C BLCA 3394478 + 3394458 3394498 41 CCTCCCGGTGGCTGCTGAAGCGCGGAGAGCTGTTCTTAGTG CCTCCCGGTGGCTGCTGAAGCGCGCAGAGCTGTTCTTAGTG < 41bp 0.854747970414801 0.61617437438524 0.5608279 0.27574015 prediction 0.477147192059122 Functional Loss - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3394478 chr1:3394482 nonsynonymous SNV 0.390 5 25 hm5C_associated_SNPs_70000 0 0 1 0 1 ARHGEF16 chr1:3394439 3'AG 3394439 Downstream 44bp
chr18 28966762 28966762 1 + A C UCEC 28966758 + 28966738 28966778 41 TGTCGAGAAGGAGAGGACAACTCGAAGAGGAACCCCATTGC TGTCGAGAAGGAGAGGACAACTCGCAGAGGAACCCCATTGC < 41bp 0.937866137493358 0.699310984613076 0.8930664 0.28820395 prediction 0.477110305760563 Functional Loss - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28966758 chr18:28966762 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_70004 0 0 0 0 1 DSG4 chr18:28966782 5'GT 28966782 Upstream 21bp
chr2 238990769 238990769 1 + G A HNSC 238990766 + 238990746 238990786 41 CTACCTCCCATCCTCGTGCACACGGATGCTGCACAGGCCTT CTACCTCCCATCCTCGTGCACACAGATGCTGCACAGGCCTT < 41bp 0.763272714252731 0.524722961488299 0.17732003 0.057281703 prediction 0.477099505528866 Functional Loss - SCLY ENSG00000132330 CDS Human protein_coding chr2:238990766 chr2:238990769 synonymous SNV . 0 24 hm5C_associated_SNPs_70007 0 0 1 0 2 SCLY chr2:238990686 3'AG 238990686 Downstream 84bp
chr2 238990769 238990769 1 + G A HNSC 238990766 + 238990746 238990786 41 CTACCTCCCATCCTCGTGCACACGGATGCTGCACAGGCCTT CTACCTCCCATCCTCGTGCACACAGATGCTGCACAGGCCTT < 41bp 0.763272714252731 0.524722961488299 0.17732003 0.057281703 prediction 0.477099505528866 Functional Loss - SCLY ENSG00000132330 CDS Human protein_coding chr2:238990766 chr2:238990769 synonymous SNV . 0 24 hm5C_associated_SNPs_70007 0 0 1 0 2 SCLY chr2:238990850 5'GT 238990850 Upstream 82bp
chr19 38817562 38817562 1 + G T LUAD 38817559 + 38817539 38817579 41 TCTCTCTGTCCACCATCGGCCTGGGCGACTACGTGCCCGGG TCTCTCTGTCCACCATCGGCCTGTGCGACTACGTGCCCGGG < 41bp 0.738549596889312 0.340647654785627 0.51236826 0.049399048 prediction 0.477099193778624 Functional Loss - KCNK6 ENSG00000099337 CDS Human protein_coding chr19:38817559 chr19:38817562 nonsynonymous SNV 0.893 5 24 hm5C_associated_SNPs_70008 0 0 0 0 1 KCNK6 chr19:38817628 5'GT 38817628 Upstream 67bp
chr15 42681169 42681169 1 + G T UCEC 42681167 + 42681147 42681187 41 TCTGAAAGGTGGGAACACCACAGAGGCCATGGAGGACTTCA TCTGAAAGGTGGGAACACCACATAGGCCATGGAGGACTTCA < 41bp 0.761280541956919 0.522731443788966 0.28767717 0.041203737 prediction 0.477098196335907 Functional Loss - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42681167 chr15:42681169 stopgain 0.999 0 23 hm5C_associated_SNPs_70009 0 0 0 0 1 CAPN3 chr15:42681126 3'AG 42681126 Downstream 44bp
chr1 909268 909268 1 + C T BLCA 909266 + 909246 909286 41 ACGCCCTCGAGCCCACTCCCCTCGGTGCCTGTGTCTGTGCC ACGCCCTCGAGCCCACTCCCCTTGGTGCCTGTGTCTGTGCC < 41bp 0.738546953941075 0.481873780020785 0.16933227 0.08493316 prediction 0.47709390788215 Functional Loss - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:909266 chr1:909268 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_70010 0 0 0 0 1 PLEKHN1 chr1:909213 3'AG 909213 Downstream 56bp
chr5 177034356 177034356 1 + C T COAD 177034354 + 177034334 177034374 41 TTCCTGGAGAGCAGCAACAGCACGGACTACATTGCCATGCA TTCCTGGAGAGCAGCAACAGCATGGACTACATTGCCATGCA < 41bp 0.789268197818229 0.550727385736694 0.77396774 0.6626838 prediction 0.47708162416307 Functional Loss - B4GALT7 ENSG00000027847 CDS Human protein_coding chr5:177034354 chr5:177034356 nonsynonymous SNV 0.971 3 23 hm5C_associated_SNPs_70013 0 0 1 0 1 B4GALT7 chr5:177034303 3'AG 177034303 Downstream 54bp
chr13 25265365 25265365 1 + G A COAD 25265362 + 25265342 25265382 41 GCATCATTGTGGCCAATGTGCCCGAGGGCCTCCTGGCCACT GCATCATTGTGGCCAATGTGCCCAAGGGCCTCCTGGCCACT < 41bp 0.773883537075281 0.535344117085883 0.052315474 0.022614717 prediction 0.477078839978797 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25265362 chr13:25265365 nonsynonymous SNV 0.944 5 24 hm5C_associated_SNPs_70015 0 0 0 0 1 ATP12A chr13:25265388 5'GT 25265388 Upstream 24bp
chr2 135621051 135621051 1 + G A LUAD 135621048 + 135621028 135621068 41 GTGAGCTACCCCAGGAGGTTCGTGGGTCTGGGGACGTTGCC GTGAGCTACCCCAGGAGGTTCGTAGGTCTGGGGACGTTGCC < 41bp 0.751819072100791 0.513284735425736 0.8582736 0.75436825 prediction 0.47706867335011 Functional Loss - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135621048 chr2:135621051 synonymous SNV . 0 24 hm5C_associated_SNPs_70016 0 0 0 0 1 ACMSD chr2:135620965 3'AG 135620965 Downstream 87bp
chr5 156746857 156746857 1 + G T UCEC 156746855 + 156746835 156746875 41 CATCAGGAACACCATCTACGCGGCATTGCAGGACTTCGCCC CATCAGGAACACCATCTACGCGTCATTGCAGGACTTCGCCC < 41bp 0.889990607119371 0.651459833765856 0.28465563 0.04710409 prediction 0.477061546707029 Functional Loss - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156746855 chr5:156746857 nonsynonymous SNV 0.622 1 23 hm5C_associated_SNPs_70017 0 0 1 0 2 CYFIP2 chr5:156746770 3'AG 156746770 Downstream 88bp
chr5 156746857 156746857 1 + G T UCEC 156746855 + 156746835 156746875 41 CATCAGGAACACCATCTACGCGGCATTGCAGGACTTCGCCC CATCAGGAACACCATCTACGCGTCATTGCAGGACTTCGCCC < 41bp 0.889990607119371 0.651459833765856 0.28465563 0.04710409 prediction 0.477061546707029 Functional Loss - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156746855 chr5:156746857 nonsynonymous SNV 0.622 1 23 hm5C_associated_SNPs_70017 0 0 1 0 2 CYFIP2 chr5:156746936 5'GT 156746936 Upstream 80bp
chr16 70220403 70220403 1 + C T rs538341866 70220401 + 70220381 70220421 41 TCCAGCCCAGGAGCACATCTCCCGGTGGGGCCCAGGGTCCT TCCAGCCCAGGAGCACATCTCCTGGTGGGGCCCAGGGTCCT < 41bp 0.74271670027107 0.504188621108783 0.8594532 0.8188412 prediction 0.477056158324575 Functional Loss - CLEC18C ENSG00000157335 CDS Human protein_coding chr16:70220401 chr16:70220403 nonsynonymous SNV 0.988 2 23 hm5C_associated_SNPs_70019 0 0 0 0 1 CLEC18C chr16:70220386 3'AG 70220386 Downstream 18bp
chr14 65007620 65007620 1 + G A BRCA 65007617 + 65007597 65007637 41 CGACCTGGGCACCACCTATTCGTGCGTCGGGGTCTTCCAAC CGACCTGGGCACCACCTATTCGTACGTCGGGGTCTTCCAAC < 41bp 0.738522958120324 0.495899902024092 0.24767342 0.088828534 prediction 0.477045916240648 Functional Loss - HSPA2 ENSG00000126803 CDS Human protein_coding chr14:65007617 chr14:65007620 nonsynonymous SNV 0.964 3 24 hm5C_associated_SNPs_70023 0 0 0 0 1 HSPA2 chr14:65007563 3'AG 65007563 Downstream 58bp
chr17 61573820 61573820 1 + C T COAD 61573818 + 61573798 61573838 41 CTGTGCCAGGCAGCTGGCCACACGGGCCCCCTGCACAAGTG CTGTGCCAGGCAGCTGGCCACATGGGCCCCCTGCACAAGTG < 41bp 0.769343363141763 0.530820678863869 0.69218886 0.6290439 prediction 0.477045368555786 Functional Loss - ACE ENSG00000159640;ENSG00000264813 CDS Human other chr17:61573818 chr17:61573820 nonsynonymous SNV 0.045 0 23 hm5C_associated_SNPs_70024 0 0 0 0 2 ACE chr17:61573755 3'AG 61573755 Downstream 66bp
chr17 61573820 61573820 1 + C T COAD 61573818 + 61573798 61573838 41 CTGTGCCAGGCAGCTGGCCACACGGGCCCCCTGCACAAGTG CTGTGCCAGGCAGCTGGCCACATGGGCCCCCTGCACAAGTG < 41bp 0.769343363141763 0.530820678863869 0.69218886 0.6290439 prediction 0.477045368555786 Functional Loss - ACE ENSG00000159640;ENSG00000264813 CDS Human other chr17:61573818 chr17:61573820 nonsynonymous SNV 0.045 0 23 hm5C_associated_SNPs_70024 0 0 0 0 2 ACE chr17:61573877 5'GT 61573877 Upstream 58bp
chr14 64855129 64855129 1 + G T SARC 64855127 + 64855107 64855147 41 TTGGTGGTGTCCATCGTGGGCAGCGGACTAATAAAGGCCAT TTGGTGGTGTCCATCGTGGGCATCGGACTAATAAAGGCCAT < 41bp 0.738519821611619 0.478845704887902 0.48021588 0.11685389 prediction 0.477039643223238 Functional Loss - MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64855127 chr14:64855129 nonsynonymous SNV 0.684 1 23 hm5C_associated_SNPs_70025 0 0 1 0 1 MTHFD1 chr14:64855186 5'GT 64855186 Upstream 58bp
chr17 18051427 18051427 1 + G T STAD 18051425 + 18051405 18051445 41 CCATGGGCCGGGCCCAACAGCAGGGCTCGGGGGCTGCCCGC CCATGGGCCGGGCCCAACAGCATGGCTCGGGGGCTGCCCGC < 41bp 0.73851581671222 0.420004062325551 0.93556345 0.14762175 prediction 0.477031633424441 Functional Loss - MYO15A ENSG00000091536 CDS Human protein_coding chr17:18051425 chr17:18051427 nonsynonymous SNV 0.993 1 23 hm5C_associated_SNPs_70027 0 0 0 0 2 MYO15A chr17:18051343 3'AG 18051343 Downstream 85bp
chr17 18051427 18051427 1 + G T STAD 18051425 + 18051405 18051445 41 CCATGGGCCGGGCCCAACAGCAGGGCTCGGGGGCTGCCCGC CCATGGGCCGGGCCCAACAGCATGGCTCGGGGGCTGCCCGC < 41bp 0.73851581671222 0.420004062325551 0.93556345 0.14762175 prediction 0.477031633424441 Functional Loss - MYO15A ENSG00000091536 CDS Human protein_coding chr17:18051425 chr17:18051427 nonsynonymous SNV 0.993 1 23 hm5C_associated_SNPs_70027 0 0 0 0 2 MYO15A chr17:18051524 5'GT 18051524 Upstream 98bp
chr17 48750499 48750499 1 + G T CESC 48750496 + 48750476 48750516 41 CCAGAAGGCGTGCTGGCAGGCAAGGTGAGGCCTGCCAGAGG CCAGAAGGCGTGCTGGCAGGCAATGTGAGGCCTGCCAGAGG < 41bp 0.738511288661392 0.334847036728411 0.76091826 0.24725246 prediction 0.477022577322784 Functional Loss - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48750496 chr17:48750499 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_70029 0 0 0 0 1 ABCC3 chr17:48750499 5'GT 48750499 Upstream 1bp
chr2 28634831 28634831 1 + T C HNSC 28634830 + 28634810 28634850 41 TGGAGGAGGAGAAGTCAGGCCTGCAGAAGGAGATTGCTGAG TGGAGGAGGAGAAGTCAGGCCCGCAGAAGGAGATTGCTGAG < 41bp 0.757334349968182 0.518825247272156 0.5160909 0.23694694 prediction 0.477018205392051 Functional Loss - FOSL2 ENSG00000075426 CDS Human protein_coding chr2:28634830 chr2:28634831 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_70030 0 0 1 0 2 FOSL2 chr2:28634746 3'AG 28634746 Downstream 86bp
chr2 28634831 28634831 1 + T C HNSC 28634830 + 28634810 28634850 41 TGGAGGAGGAGAAGTCAGGCCTGCAGAAGGAGATTGCTGAG TGGAGGAGGAGAAGTCAGGCCCGCAGAAGGAGATTGCTGAG < 41bp 0.757334349968182 0.518825247272156 0.5160909 0.23694694 prediction 0.477018205392051 Functional Loss - FOSL2 ENSG00000075426 CDS Human protein_coding chr2:28634830 chr2:28634831 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_70030 0 0 1 0 2 FOSL2 chr2:28634797 3'AG 28634797 Downstream 35bp
chr3 128758636 128758636 1 + C T BLCA 128758634 + 128758614 128758654 41 CAGCTGTTGCGGAGACAGCCCTCGGCACCAGCCTCTGCAGC CAGCTGTTGCGGAGACAGCCCTTGGCACCAGCCTCTGCAGC < 41bp 0.759217319337288 0.520711659155388 0.34266332 0.33770078 prediction 0.477011320363799 Functional Loss - EFCC1 ENSG00000114654 CDS Human protein_coding chr3:128758634 chr3:128758636 nonsynonymous SNV 0.007 0 23 hm5C_associated_SNPs_70032 0 0 0 0 1 EFCC1 chr3:128758555 3'AG 128758555 Downstream 82bp
chr8 142441123 142441123 1 + G T UCEC 142441120 + 142441100 142441140 41 TTCAAAGACCCACACACGCACAAGACCCGGTGCTGCGTTAT TTCAAAGACCCACACACGCACAATACCCGGTGCTGCGTTAT < 41bp 0.738501425105748 0.345486516314388 0.2841717 0.07187939 prediction 0.477002850211497 Functional Loss - PTP4A3 ENSG00000184489 CDS Human protein_coding chr8:142441120 chr8:142441123 nonsynonymous SNV 0.851 1 24 hm5C_associated_SNPs_70034 0 0 0 0 1 PTP4A3 chr8:142441027 3'AG 142441027 Downstream 97bp
chr17 74465812 74465812 1 + C T rs200468284 74465810 + 74465790 74465830 41 TGCATGTGCTGGCCGTGCACCGCGCCTTCCGGCAGCAGGGC TGCATGTGCTGGCCGTGCACCGTGCCTTCCGGCAGCAGGGC < 41bp 0.738489122232392 0.492715968299776 0.40434292 0.2634064 prediction 0.476978244464783 Functional Loss - AANAT ENSG00000129673 CDS Human protein_coding chr17:74465810 chr17:74465812 synonymous SNV . 0 23 hm5C_associated_SNPs_70041 0 0 0 0 1 AANAT chr17:74465747 3'AG 74465747 Downstream 66bp
chr17 74465813 74465813 1 + G A rs28936679 74465810 + 74465790 74465830 41 TGCATGTGCTGGCCGTGCACCGCGCCTTCCGGCAGCAGGGC TGCATGTGCTGGCCGTGCACCGCACCTTCCGGCAGCAGGGC < 41bp 0.738489122232392 0.490982173639218 0.40434292 0.14464593 prediction 0.476978244464783 Functional Loss - AANAT ENSG00000129673 CDS Human protein_coding chr17:74465810 chr17:74465813 nonsynonymous SNV 0.349 0 24 hm5C_associated_SNPs_70042 1 0 0 0 1 AANAT chr17:74465747 3'AG 74465747 Downstream 67bp
chr19 14160012 14160012 1 + C T SKCM 14160010 + 14159990 14160030 41 TTGGCGACTCCAAGATGCCCCTCCAGGGACCCCCGCCATAG TTGGCGACTCCAAGATGCCCCTTCAGGGACCCCCGCCATAG < 41bp 0.831501725305851 0.593015944888307 0.94038296 0.07847077 prediction 0.476971560835088 Functional Loss - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14160010 chr19:14160012 nonsynonymous SNV 0.721 0 23 hm5C_associated_SNPs_70045 0 0 0 0 1 IL27RA chr19:14159968 3'AG 14159968 Downstream 45bp
chr3 15475910 15475910 1 + C T SKCM 15475908 + 15475888 15475928 41 GGAACAGCAGCCCACTCGTCCTCCACAGACGTCACAGCCAC GGAACAGCAGCCCACTCGTCCTTCACAGACGTCACAGCCAC < 41bp 0.859594781911869 0.621118833220967 0.89960027 0.035559654 prediction 0.476951897381803 Functional Loss - EAF1 ENSG00000144597 CDS Human protein_coding chr3:15475908 chr3:15475910 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_70046 0 0 1 0 1 EAF1 chr3:15475855 3'AG 15475855 Downstream 56bp
chr16 66503707 66503707 1 + C T UCEC 66503705 + 66503685 66503725 41 GGCACCGCCACCGCCACCACCGCCACCACCACCACCATCAT GGCACCGCCACCGCCACCACCGTCACCACCACCACCATCAT < 41bp 0.797081443363134 0.558609133302198 0.2318573 0.097542614 prediction 0.476944620121872 Functional Loss - BEAN1 ENSG00000166546 CDS Human protein_coding chr16:66503705 chr16:66503707 synonymous SNV . 0 23 hm5C_associated_SNPs_70048 0 0 0 0 1 BEAN1 chr16:66503768 5'GT 66503768 Upstream 62bp
chr4 110415839 110415839 1 + C T BLCA 110415837 + 110415817 110415857 41 TGAACCTGATCCTGCTTCTGCTCCAGCTCCAGCTTCAGCTC TGAACCTGATCCTGCTTCTGCTTCAGCTCCAGCTTCAGCTC < 41bp 0.845586310411256 0.60712609415055 0.41465738 0.046024054 prediction 0.476920432521413 Functional Loss - SEC24B ENSG00000138802 CDS Human protein_coding chr4:110415837 chr4:110415839 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_70052 0 0 1 0 1 SEC24B chr4:110415771 3'AG 110415771 Downstream 69bp
chr11 129990686 129990686 1 + C T UCEC 129990684 + 129990664 129990704 41 GGATGGAGGTGTGTGAGAATCACCAGCACTGGCACACGGTA GGATGGAGGTGTGTGAGAATCATCAGCACTGGCACACGGTA < 41bp 0.827355958453473 0.588900424057606 0.21021837 0.16466436 prediction 0.476911068791734 Functional Loss - APLP2 ENSG00000084234 CDS Human protein_coding chr11:129990684 chr11:129990686 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_70054 0 0 1 0 2 APLP2 chr11:129990601 3'AG 129990601 Downstream 86bp
chr11 129990686 129990686 1 + C T UCEC 129990684 + 129990664 129990704 41 GGATGGAGGTGTGTGAGAATCACCAGCACTGGCACACGGTA GGATGGAGGTGTGTGAGAATCATCAGCACTGGCACACGGTA < 41bp 0.827355958453473 0.588900424057606 0.21021837 0.16466436 prediction 0.476911068791734 Functional Loss - APLP2 ENSG00000084234 CDS Human protein_coding chr11:129990684 chr11:129990686 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_70054 0 0 1 0 2 APLP2 chr11:129990713 5'GT 129990713 Upstream 28bp
chr17 7758849 7758849 1 + C T BLCA 7758847 + 7758827 7758867 41 TGGTCACCGGATTCCTGCTCCTCGTGCCGCTGCTCGTGCTT TGGTCACCGGATTCCTGCTCCTTGTGCCGCTGCTCGTGCTT < 41bp 0.777918403056963 0.539463746750091 0.36757073 0.4107765 prediction 0.476909312613744 Functional Loss - TMEM88 ENSG00000167874 CDS Human protein_coding chr17:7758847 chr17:7758849 synonymous SNV . 0 23 hm5C_associated_SNPs_70055 0 0 0 0 1 TMEM88 chr17:7758763 3'AG 7758763 Downstream 87bp
chr6 30593315 30593315 1 + G T LUAD 30593312 + 30593292 30593332 41 CCACATCCCCCAGGTTGAACCACGGGACCTTGACTTCAGTA CCACATCCCCCAGGTTGAACCACTGGACCTTGACTTCAGTA < 41bp 0.738452363838319 0.36718399754735 0.50628257 0.23077673 prediction 0.476904727676637 Functional Loss - MRPS18B ENSG00000204568 CDS Human protein_coding chr6:30593312 chr6:30593315 nonsynonymous SNV 0.314 3 24 hm5C_associated_SNPs_70056 0 0 1 0 1 MRPS18B chr6:30593279 3'AG 30593279 Downstream 37bp
chr21 47541477 47541477 1 + G A rs61735828 47541474 + 47541454 47541494 41 TCTCTCCTGCCCTCAGGGATCTCGGGGAGACCCCGGTGATG TCTCTCCTGCCCTCAGGGATCTCAGGGAGACCCCGGTGATG < 41bp 0.74823988087282 0.509792871276156 0.6836233 0.7093493 prediction 0.476894019193328 Functional Loss - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47541474 chr21:47541477 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_70058 3 0 0 0 2 COL6A2 chr21:47541470 3'AG 47541470 Downstream 8bp
chr21 47541477 47541477 1 + G A rs61735828 47541474 + 47541454 47541494 41 TCTCTCCTGCCCTCAGGGATCTCGGGGAGACCCCGGTGATG TCTCTCCTGCCCTCAGGGATCTCAGGGAGACCCCGGTGATG < 41bp 0.74823988087282 0.509792871276156 0.6836233 0.7093493 prediction 0.476894019193328 Functional Loss - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47541474 chr21:47541477 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_70058 3 0 0 0 2 COL6A2 chr21:47541532 5'GT 47541532 Upstream 56bp
chr4 146461145 146461145 1 + G T COAD 146461142 + 146461122 146461162 41 TAGCAGTTACCCAAACTCTCCTGGGAGCAGCAGCAGCACCT TAGCAGTTACCCAAACTCTCCTGTGAGCAGCAGCAGCACCT < 41bp 0.738445445171304 0.347901740975611 0.85090435 0.13436481 prediction 0.476890890342608 Functional Loss - SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146461142 chr4:146461145 nonsynonymous SNV 0.986 2 24 hm5C_associated_SNPs_70061 0 0 1 0 1 SMAD1 chr4:146461213 5'GT 146461213 Upstream 69bp
chr1 28211957 28211957 1 + A T BRCA 28211953 + 28211933 28211973 41 GGCCCGCTAAGCCCCAAAGGCAGGATCTAGGTGAGTCCCTG GGCCCGCTAAGCCCCAAAGGCAGGTTCTAGGTGAGTCCCTG < 41bp 0.853539991733731 0.615095390844165 0.79002845 0.8459948 prediction 0.476889201779131 Functional Loss - THEMIS2 ENSG00000130775 CDS Human protein_coding chr1:28211953 chr1:28211957 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_70062 0 0 0 0 1 THEMIS2 chr1:28211962 5'GT 28211962 Upstream 6bp
chr2 228758580 228758580 1 + G A rs16824157 228758577 + 228758557 228758597 41 GCGTCTGGAGAGGAGCTGAACACGCTGGAGGGCCACAGGAA GCGTCTGGAGAGGAGCTGAACACACTGGAGGGCCACAGGAA < 41bp 0.757439974560863 0.518997681171966 0.68251395 0.59164804 prediction 0.476884586777795 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228758577 chr2:228758580 synonymous SNV . 0 24 hm5C_associated_SNPs_70064 0 0 0 1 2 DAW1 chr2:228758511 3'AG 228758511 Downstream 70bp
chr2 228758580 228758580 1 + G A rs16824157 228758577 + 228758557 228758597 41 GCGTCTGGAGAGGAGCTGAACACGCTGGAGGGCCACAGGAA GCGTCTGGAGAGGAGCTGAACACACTGGAGGGCCACAGGAA < 41bp 0.757439974560863 0.518997681171966 0.68251395 0.59164804 prediction 0.476884586777795 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228758577 chr2:228758580 synonymous SNV . 0 24 hm5C_associated_SNPs_70064 0 0 0 1 2 DAW1 chr2:228758633 5'GT 228758633 Upstream 54bp
chr12 50501870 50501870 1 + C T STAD 50501868 + 50501848 50501888 41 ACTGCAGGGGCCCGAGACAGCCCGGGAGCTATACAGCATCC ACTGCAGGGGCCCGAGACAGCCTGGGAGCTATACAGCATCC < 41bp 0.80446014666096 0.566018626194905 0.109577924 0.039634258 prediction 0.47688304093211 Functional Loss - GPD1 ENSG00000167588 CDS Human protein_coding chr12:50501868 chr12:50501870 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_70065 0 0 0 0 2 GPD1 chr12:50501807 3'AG 50501807 Downstream 64bp
chr12 50501870 50501870 1 + C T STAD 50501868 + 50501848 50501888 41 ACTGCAGGGGCCCGAGACAGCCCGGGAGCTATACAGCATCC ACTGCAGGGGCCCGAGACAGCCTGGGAGCTATACAGCATCC < 41bp 0.80446014666096 0.566018626194905 0.109577924 0.039634258 prediction 0.47688304093211 Functional Loss - GPD1 ENSG00000167588 CDS Human protein_coding chr12:50501868 chr12:50501870 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_70065 0 0 0 0 2 GPD1 chr12:50501913 5'GT 50501913 Upstream 44bp
chr16 88052191 88052191 1 + G A BLCA 88052188 + 88052168 88052208 41 CTGGACTACCTCTTCCACCGCGAGGTGCAGGCTGTGTCCAA CTGGACTACCTCTTCCACCGCGAAGTGCAGGCTGTGTCCAA < 41bp 0.73843951953675 0.493262065351755 0.93174183 0.9163319 prediction 0.4768790390735 Functional Loss - BANP ENSG00000172530 CDS Human protein_coding chr16:88052188 chr16:88052191 synonymous SNV . 0 24 hm5C_associated_SNPs_70066 0 0 0 0 1 BANP chr16:88052273 5'GT 88052273 Upstream 83bp
chr8 145066426 145066426 1 + C T BLCA 145066424 + 145066404 145066444 41 CAACTGCAGTCGGTCCTGACCGCCAGCCTGTCGTACATGGT CAACTGCAGTCGGTCCTGACCGTCAGCCTGTCGTACATGGT < 41bp 0.738438550214329 0.466836274898258 0.33744252 0.09603673 prediction 0.476877100428657 Functional Loss - GRINA ENSG00000178719 CDS Human protein_coding chr8:145066424 chr8:145066426 nonsynonymous SNV 0.900 0 23 hm5C_associated_SNPs_70067 0 0 1 0 1 GRINA chr8:145066413 3'AG 145066413 Downstream 14bp
chr11 1475753 1475753 1 + T C COAD 1475752 + 1475732 1475772 41 GGTTTGGGAACTTCATCAGCCTGGAGAAGGAGGAGCAGATC GGTTTGGGAACTTCATCAGCCCGGAGAAGGAGGAGCAGATC < 41bp 0.73843678467702 0.492951618356991 0.10258582 0.19270805 prediction 0.476873569354039 Functional Loss - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1475752 chr11:1475753 nonsynonymous SNV 0.984 2 22 hm5C_associated_SNPs_70069 0 0 0 0 2 BRSK2 chr11:1475715 3'AG 1475715 Downstream 39bp
chr11 1475753 1475753 1 + T C COAD 1475752 + 1475732 1475772 41 GGTTTGGGAACTTCATCAGCCTGGAGAAGGAGGAGCAGATC GGTTTGGGAACTTCATCAGCCCGGAGAAGGAGGAGCAGATC < 41bp 0.73843678467702 0.492951618356991 0.10258582 0.19270805 prediction 0.476873569354039 Functional Loss - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1475752 chr11:1475753 nonsynonymous SNV 0.984 2 22 hm5C_associated_SNPs_70069 0 0 0 0 2 BRSK2 chr11:1475838 5'GT 1475838 Upstream 86bp
chr16 24921782 24921782 1 + G A rs151021366 24921779 + 24921759 24921799 41 TTCGAGATGGTTCAAGAAAACACGTCTAAAACCCACAGCTG TTCGAGATGGTTCAAGAAAACACATCTAAAACCCACAGCTG < 41bp 0.738430883609816 0.496765033462892 0.21550578 0.088915616 prediction 0.476861767219632 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24921779 chr16:24921782 synonymous SNV . 0 24 hm5C_associated_SNPs_70072 0 0 0 0 1 SLC5A11 chr16:24921798 5'GT 24921798 Upstream 17bp
chr12 69986785 69986785 1 + T C rs201962311 69986784 + 69986764 69986804 41 TTCCCGGGTAAGAGTTGACTCTACAGCAAAGGTTGCAGAAA TTCCCGGGTAAGAGTTGACTCCACAGCAAAGGTTGCAGAAA < 41bp 0.738429967439244 0.478924865941402 0.8826057 0.24929166 prediction 0.476859934878487 Functional Loss - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69986784 chr12:69986785 synonymous SNV . 0 22 hm5C_associated_SNPs_70073 0 0 1 1 2 CCT2 chr12:69986756 3'AG 69986756 Downstream 30bp
chr12 69986785 69986785 1 + T C rs201962311 69986784 + 69986764 69986804 41 TTCCCGGGTAAGAGTTGACTCTACAGCAAAGGTTGCAGAAA TTCCCGGGTAAGAGTTGACTCCACAGCAAAGGTTGCAGAAA < 41bp 0.738429967439244 0.478924865941402 0.8826057 0.24929166 prediction 0.476859934878487 Functional Loss - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69986784 chr12:69986785 synonymous SNV . 0 22 hm5C_associated_SNPs_70073 0 0 1 1 2 CCT2 chr12:69986883 5'GT 69986883 Upstream 99bp
chr2 202150023 202150023 1 + G T CESC 202150021 + 202150001 202150041 41 TCCAGTCACTTTGCCAGAGCCTGAGAGAGCGATGTCCTCGG TCCAGTCACTTTGCCAGAGCCTTAGAGAGCGATGTCCTCGG < 41bp 0.738423291999047 0.441669424556414 0.38227344 0.29129624 prediction 0.476846583998093 Functional Loss - CASP8 ENSG00000064012 CDS Human protein_coding chr2:202150021 chr2:202150023 synonymous SNV . 0 23 hm5C_associated_SNPs_70076 0 0 1 0 1 CASP8 chr2:202150040 5'GT 202150040 Upstream 18bp
chr20 62642772 62642772 1 + G C KIRP 62642771 + 62642751 62642791 41 GGAGGAAGCCAATGGGAACACGCAGATGGTGGAGAAGATCA GGAGGAAGCCAATGGGAACACCCAGATGGTGGAGAAGATCA < 41bp 0.738421926398979 0.42390440800673 0.13135764 0.09050745 prediction 0.476843852797958 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62642771 chr20:62642772 synonymous SNV . 0 22 hm5C_associated_SNPs_70078 0 0 1 0 1 PRPF6 chr20:62642856 5'GT 62642856 Upstream 85bp
chr19 18960966 18960966 1 + G T SKCM 18960963 + 18960943 18960983 41 GGCCCCTGGGGGAGACAGTCCTGGAGTGCTACAACTGCGGC GGCCCCTGGGGGAGACAGTCCTGTAGTGCTACAACTGCGGC < 41bp 0.924496447308285 0.686075746910564 0.47987348 0.23798189 prediction 0.476841400795443 Functional Loss - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18960963 chr19:18960966 stopgain 1.000 1 24 hm5C_associated_SNPs_70079 0 0 1 0 2 UPF1 chr19:18960884 3'AG 18960884 Downstream 83bp
chr19 18960966 18960966 1 + G T SKCM 18960963 + 18960943 18960983 41 GGCCCCTGGGGGAGACAGTCCTGGAGTGCTACAACTGCGGC GGCCCCTGGGGGAGACAGTCCTGTAGTGCTACAACTGCGGC < 41bp 0.924496447308285 0.686075746910564 0.47987348 0.23798189 prediction 0.476841400795443 Functional Loss - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18960963 chr19:18960966 stopgain 1.000 1 24 hm5C_associated_SNPs_70079 0 0 1 0 2 UPF1 chr19:18961051 5'GT 18961051 Upstream 86bp
chr5 1219126 1219126 1 + G A SKCM 1219123 + 1219103 1219143 41 TCTTCATTATGCTCTTCTGCCTGGGGCTGTCATCTATGTTT TCTTCATTATGCTCTTCTGCCTGAGGCTGTCATCTATGTTT < 41bp 0.764927036883601 0.526511684525111 0.45486948 0.24267095 prediction 0.476830704716981 Functional Loss - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1219123 chr5:1219126 nonsynonymous SNV 0.891 4 24 hm5C_associated_SNPs_70081 0 0 0 0 1 SLC6A19 chr5:1219222 5'GT 1219222 Upstream 97bp
chr7 5949680 5949680 1 + A C UCEC 5949679 + 5949659 5949699 41 GTTGCAGGAGTGGATTAGAACAAGATGACATGAGAATTTTA GTTGCAGGAGTGGATTAGAACCAGATGACATGAGAATTTTA < 41bp 0.781485805467887 0.543071290503908 0.25573742 0.33572412 prediction 0.476829029927958 Functional Loss - CCZ1 ENSG00000122674 CDS Human protein_coding chr7:5949679 chr7:5949680 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_70082 0 0 0 0 2 CCZ1 chr7:5949666 3'AG 5949666 Downstream 15bp
chr7 5949680 5949680 1 + A C UCEC 5949679 + 5949659 5949699 41 GTTGCAGGAGTGGATTAGAACAAGATGACATGAGAATTTTA GTTGCAGGAGTGGATTAGAACCAGATGACATGAGAATTTTA < 41bp 0.781485805467887 0.543071290503908 0.25573742 0.33572412 prediction 0.476829029927958 Functional Loss - CCZ1 ENSG00000122674 CDS Human protein_coding chr7:5949679 chr7:5949680 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_70082 0 0 0 0 2 CCZ1 chr7:5949747 5'GT 5949747 Upstream 68bp
chr16 23221166 23221166 1 + C T STAD 23221164 + 23221144 23221184 41 TCTACAACGCTGCCTACTCGCTCCAGGTAACAGATTGGCAG TCTACAACGCTGCCTACTCGCTTCAGGTAACAGATTGGCAG < 41bp 0.84372865191012 0.605319707487197 0.8676653 0.2849164 prediction 0.476817888845847 Functional Loss - SCNN1G ENSG00000166828 CDS Human protein_coding chr16:23221164 chr16:23221166 synonymous SNV . 0 23 hm5C_associated_SNPs_70084 0 0 0 0 2 SCNN1G chr16:23221071 3'AG 23221071 Downstream 96bp
chr16 23221166 23221166 1 + C T STAD 23221164 + 23221144 23221184 41 TCTACAACGCTGCCTACTCGCTCCAGGTAACAGATTGGCAG TCTACAACGCTGCCTACTCGCTTCAGGTAACAGATTGGCAG < 41bp 0.84372865191012 0.605319707487197 0.8676653 0.2849164 prediction 0.476817888845847 Functional Loss - SCNN1G ENSG00000166828 CDS Human protein_coding chr16:23221164 chr16:23221166 synonymous SNV . 0 23 hm5C_associated_SNPs_70084 0 0 0 0 2 SCNN1G chr16:23221169 5'GT 23221169 Upstream 4bp
chr5 131410627 131410627 1 + C T UCEC 131410625 + 131410605 131410645 41 AAGCAGCACTGCCCTCCAACCCCGGTGAGTGCCTACGGCAG AAGCAGCACTGCCCTCCAACCCTGGTGAGTGCCTACGGCAG < 41bp 0.751554779149618 0.513147900885228 0.93567324 0.90675604 prediction 0.476813756528779 Functional Loss - CSF2 ENSG00000164400 CDS Human protein_coding chr5:131410625 chr5:131410627 nonsynonymous SNV 0.599 0 23 hm5C_associated_SNPs_70086 0 0 0 0 1 CSF2 chr5:131410628 5'GT 131410628 Upstream 2bp
chrX 10077966 10077966 1 + G T UCEC 10077964 + 10077944 10077984 41 CATCATTGCACAGCGCCGCTCTGCGGGAGATGTGGCCCGGC CATCATTGCACAGCGCCGCTCTTCGGGAGATGTGGCCCGGC < 41bp 0.738401837353243 0.466148223185522 0.5827077 0.45585376 prediction 0.476803674706487 Functional Loss - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10077964 chrX:10077966 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_70088 0 0 0 0 1 WWC3 chrX:10078060 5'GT 10078060 Upstream 95bp
chr17 58504109 58504109 1 + G A SKCM 58504106 + 58504086 58504126 41 TGGCGGTTCATCTCCCTCTTCTCGGAGCTGGAAGCAAAGCA TGGCGGTTCATCTCCCTCTTCTCAGAGCTGGAAGCAAAGCA < 41bp 0.754204412651369 0.515806134710626 0.3211582 0.19771662 prediction 0.476796555881487 Functional Loss - C17orf64 ENSG00000141371 CDS Human protein_coding chr17:58504106 chr17:58504109 synonymous SNV . 0 24 hm5C_associated_SNPs_70089 0 0 0 0 2 C17orf64 chr17:58504079 3'AG 58504079 Downstream 31bp
chr17 58504109 58504109 1 + G A SKCM 58504106 + 58504086 58504126 41 TGGCGGTTCATCTCCCTCTTCTCGGAGCTGGAAGCAAAGCA TGGCGGTTCATCTCCCTCTTCTCAGAGCTGGAAGCAAAGCA < 41bp 0.754204412651369 0.515806134710626 0.3211582 0.19771662 prediction 0.476796555881487 Functional Loss - C17orf64 ENSG00000141371 CDS Human protein_coding chr17:58504106 chr17:58504109 synonymous SNV . 0 24 hm5C_associated_SNPs_70089 0 0 0 0 2 C17orf64 chr17:58504178 5'GT 58504178 Upstream 70bp
chr17 2270646 2270646 1 + C T UCEC 2270644 + 2270624 2270664 41 GAAGAGGAGGATAAACTGCACGCGATGCTCTCAATGATCTG GAAGAGGAGGATAAACTGCACGTGATGCTCTCAATGATCTG < 41bp 0.738387839622175 0.464469655610064 0.083450854 0.14219874 prediction 0.47677567924435 Functional Loss - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2270644 chr17:2270646 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_70092 0 0 0 0 2 SGSM2 chr17:2270565 3'AG 2270565 Downstream 82bp
chr17 2270646 2270646 1 + C T UCEC 2270644 + 2270624 2270664 41 GAAGAGGAGGATAAACTGCACGCGATGCTCTCAATGATCTG GAAGAGGAGGATAAACTGCACGTGATGCTCTCAATGATCTG < 41bp 0.738387839622175 0.464469655610064 0.083450854 0.14219874 prediction 0.47677567924435 Functional Loss - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2270644 chr17:2270646 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_70092 0 0 0 0 2 SGSM2 chr17:2270699 5'GT 2270699 Upstream 54bp
chr2 65301482 65301482 1 + G A HNSC 65301479 + 65301459 65301499 41 ATGTTGCAGATGTTACTGACCACGGGACTGCAGCCAGGTCC ATGTTGCAGATGTTACTGACCACAGGACTGCAGCCAGGTCC < 41bp 0.738387726050857 0.498559776777389 0.63809294 0.24605358 prediction 0.476775452101714 Functional Loss - CEP68 ENSG00000011523 CDS Human protein_coding chr2:65301479 chr2:65301482 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_70093 0 0 1 0 2 CEP68 chr2:65301416 3'AG 65301416 Downstream 67bp
chr2 65301482 65301482 1 + G A HNSC 65301479 + 65301459 65301499 41 ATGTTGCAGATGTTACTGACCACGGGACTGCAGCCAGGTCC ATGTTGCAGATGTTACTGACCACAGGACTGCAGCCAGGTCC < 41bp 0.738387726050857 0.498559776777389 0.63809294 0.24605358 prediction 0.476775452101714 Functional Loss - CEP68 ENSG00000011523 CDS Human protein_coding chr2:65301479 chr2:65301482 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_70093 0 0 1 0 2 CEP68 chr2:65301538 5'GT 65301538 Upstream 57bp
chr18 43243801 43243801 1 + C T SKCM 43243799 + 43243779 43243819 41 GGCCCAAAGGTGGAGGAGGGCTCGGAGGCTGTGCTCTCCAA GGCCCAAAGGTGGAGGAGGGCTTGGAGGCTGTGCTCTCCAA < 41bp 0.824217882421522 0.58583024187183 0.8771441 0.6819364 prediction 0.476775281099383 Functional Loss - SLC14A2 ENSG00000132874 CDS Human protein_coding chr18:43243799 chr18:43243801 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_70094 0 0 0 0 2 SLC14A2 chr18:43243750 3'AG 43243750 Downstream 52bp
chr18 43243801 43243801 1 + C T SKCM 43243799 + 43243779 43243819 41 GGCCCAAAGGTGGAGGAGGGCTCGGAGGCTGTGCTCTCCAA GGCCCAAAGGTGGAGGAGGGCTTGGAGGCTGTGCTCTCCAA < 41bp 0.824217882421522 0.58583024187183 0.8771441 0.6819364 prediction 0.476775281099383 Functional Loss - SLC14A2 ENSG00000132874 CDS Human protein_coding chr18:43243799 chr18:43243801 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_70094 0 0 0 0 2 SLC14A2 chr18:43243872 5'GT 43243872 Upstream 72bp
chr19 6772993 6772993 1 + G T UCEC 6772990 + 6772970 6773010 41 TACCCCATGCCATCAACCTGCGTGAGGTCAACCTGCGCCCC TACCCCATGCCATCAACCTGCGTTAGGTCAACCTGCGCCCC < 41bp 0.73838601674392 0.348146244822745 0.26385587 0.15775672 prediction 0.47677203348784 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6772990 chr19:6772993 stopgain 0.932 0 24 hm5C_associated_SNPs_70097 0 0 1 0 1 VAV1 chr19:6773022 5'GT 6773022 Upstream 30bp
chr11 66326838 66326838 1 + G T LUAD 66326836 + 66326816 66326856 41 GGACCGCGTGGAGCACATTGCCGCGCTGGCCCAGGAGCTCA GGACCGCGTGGAGCACATTGCCTCGCTGGCCCAGGAGCTCA < 41bp 0.738383453649849 0.38126729210233 0.8094801 0.42675036 prediction 0.476766907299698 Functional Loss - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66326836 chr11:66326838 unknown 0.162 0 23 hm5C_associated_SNPs_70098 0 0 0 0 1 ACTN3 chr11:66326857 5'GT 66326857 Upstream 20bp
chr1 117556343 117556343 1 + G A STAD 117556340 + 117556320 117556360 41 GGTAGCAGAGGTCATGAAAACACGCACAGGTTCCTGGCAGG GGTAGCAGAGGTCATGAAAACACACACAGGTTCCTGGCAGG < 41bp 0.738381754766363 0.48669423304898 0.21864969 0.016829222 prediction 0.476763509532726 Functional Loss - CD101 ENSG00000134256 CDS Human protein_coding chr1:117556340 chr1:117556343 nonsynonymous SNV 0.019 0 24 hm5C_associated_SNPs_70099 0 0 0 0 1 CD101 chr1:117556414 5'GT 117556414 Upstream 72bp
chr4 146617753 146617753 1 + G A LUAD 146617750 + 146617730 146617770 41 TCTGCCTGTCATCTTCTCTGCTGGGCTGGTACCCAAGAGAC TCTGCCTGTCATCTTCTCTGCTGAGCTGGTACCCAAGAGAC < 41bp 0.751823513571583 0.513448449447753 0.2531609 0.16665503 prediction 0.476750128247661 Functional Loss - C4orf51 ENSG00000237136 CDS Human protein_coding chr4:146617750 chr4:146617753 stopgain 0.000 0 24 hm5C_associated_SNPs_70103 0 0 0 0 2 C4orf51 chr4:146617711 3'AG 146617711 Downstream 43bp
chr4 146617753 146617753 1 + G A LUAD 146617750 + 146617730 146617770 41 TCTGCCTGTCATCTTCTCTGCTGGGCTGGTACCCAAGAGAC TCTGCCTGTCATCTTCTCTGCTGAGCTGGTACCCAAGAGAC < 41bp 0.751823513571583 0.513448449447753 0.2531609 0.16665503 prediction 0.476750128247661 Functional Loss - C4orf51 ENSG00000237136 CDS Human protein_coding chr4:146617750 chr4:146617753 stopgain 0.000 0 24 hm5C_associated_SNPs_70103 0 0 0 0 2 C4orf51 chr4:146617784 5'GT 146617784 Upstream 32bp
chr17 9532088 9532088 1 + G T LUAD 9532085 + 9532065 9532105 41 CTGCGGATCACCGTGCCCAACATGACCTGCCACGGCATCGA CTGCGGATCACCGTGCCCAACATTACCTGCCACGGCATCGA < 41bp 0.738373033178934 0.338964860357885 0.08305484 0.027324915 prediction 0.476746066357867 Functional Loss - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9532085 chr17:9532088 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_70104 0 0 0 0 2 CFAP52 chr17:9531989 3'AG 9531989 Downstream 100bp
chr17 9532088 9532088 1 + G T LUAD 9532085 + 9532065 9532105 41 CTGCGGATCACCGTGCCCAACATGACCTGCCACGGCATCGA CTGCGGATCACCGTGCCCAACATTACCTGCCACGGCATCGA < 41bp 0.738373033178934 0.338964860357885 0.08305484 0.027324915 prediction 0.476746066357867 Functional Loss - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9532085 chr17:9532088 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_70104 0 0 0 0 2 CFAP52 chr17:9532137 5'GT 9532137 Upstream 50bp
chr1 17566254 17566254 1 + C T SKCM 17566252 + 17566232 17566272 41 AGATGCTGGCAGACAGACACCTCCAGAGAGACAATCTTCAT AGATGCTGGCAGACAGACACCTTCAGAGAGACAATCTTCAT < 41bp 0.738371886938483 0.441491745637456 0.91850185 0.046726316 prediction 0.476743773876966 Functional Loss - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17566252 chr1:17566254 synonymous SNV . 0 23 hm5C_associated_SNPs_70105 0 0 0 0 2 PADI1 chr1:17566199 3'AG 17566199 Downstream 56bp
chr1 17566254 17566254 1 + C T SKCM 17566252 + 17566232 17566272 41 AGATGCTGGCAGACAGACACCTCCAGAGAGACAATCTTCAT AGATGCTGGCAGACAGACACCTTCAGAGAGACAATCTTCAT < 41bp 0.738371886938483 0.441491745637456 0.91850185 0.046726316 prediction 0.476743773876966 Functional Loss - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17566252 chr1:17566254 synonymous SNV . 0 23 hm5C_associated_SNPs_70105 0 0 0 0 2 PADI1 chr1:17566278 5'GT 17566278 Upstream 25bp
chr16 67469706 67469706 1 + C T rs143819538 67469704 + 67469684 67469724 41 CCAAACCAGGAGACATTAGCCGCGTGCTAGAGTTCACCAAG CCAAACCAGGAGACATTAGCCGTGTGCTAGAGTTCACCAAG < 41bp 0.8059085499027 0.567538313743852 0.77037483 0.697067 prediction 0.476740472317698 Functional Loss - HSD11B2 ENSG00000176387 CDS Human protein_coding chr16:67469704 chr16:67469706 synonymous SNV . 0 23 hm5C_associated_SNPs_70106 0 0 1 0 1 HSD11B2 chr16:67469743 5'GT 67469743 Upstream 38bp
chr1 223947089 223947089 1 + C T UCEC 223947087 + 223947067 223947107 41 GCTCAACCGCTTCAAGCTGCCGCCAGGAGAGTACATTCTCG GCTCAACCGCTTCAAGCTGCCGTCAGGAGAGTACATTCTCG < 41bp 0.818611778099035 0.580245109803299 0.18202928 0.112127095 prediction 0.476733336591473 Functional Loss - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223947087 chr1:223947089 nonsynonymous SNV 0.290 3 23 hm5C_associated_SNPs_70108 0 0 1 0 1 CAPN2 chr1:223947183 5'GT 223947183 Upstream 95bp
chr19 12920927 12920927 1 + C T STAD 12920925 + 12920905 12920945 41 GATGCCAGAGACATACCAGGCGCGGCTGCAGCAAAGTTTTC GATGCCAGAGACATACCAGGCGTGGCTGCAGCAAAGTTTTC < 41bp 0.738364130571373 0.47762653036056 0.08764115 0.10921964 prediction 0.476728261142747 Functional Loss - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12920925 chr19:12920927 nonsynonymous SNV 0.123 3 23 hm5C_associated_SNPs_70110 0 0 1 0 2 RNASEH2A chr19:12920885 3'AG 12920885 Downstream 43bp
chr19 12920927 12920927 1 + C T STAD 12920925 + 12920905 12920945 41 GATGCCAGAGACATACCAGGCGCGGCTGCAGCAAAGTTTTC GATGCCAGAGACATACCAGGCGTGGCTGCAGCAAAGTTTTC < 41bp 0.738364130571373 0.47762653036056 0.08764115 0.10921964 prediction 0.476728261142747 Functional Loss - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12920925 chr19:12920927 nonsynonymous SNV 0.123 3 23 hm5C_associated_SNPs_70110 0 0 1 0 2 RNASEH2A chr19:12921022 5'GT 12921022 Upstream 96bp
chr11 70260707 70260707 1 + G A rs143311444 70260704 + 70260684 70260724 41 AAGCACTGCTCGCAGGTGGACTCGGTCCGTGGCTTCGGAGG AAGCACTGCTCGCAGGTGGACTCAGTCCGTGGCTTCGGAGG < 41bp 0.753961850357532 0.515599294504401 0.59294134 0.31549242 prediction 0.476725111706263 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70260704 chr11:70260707 synonymous SNV . 0 24 hm5C_associated_SNPs_70111 0 0 1 0 2 CTTN chr11:70260648 3'AG 70260648 Downstream 60bp
chr11 70260707 70260707 1 + G A rs143311444 70260704 + 70260684 70260724 41 AAGCACTGCTCGCAGGTGGACTCGGTCCGTGGCTTCGGAGG AAGCACTGCTCGCAGGTGGACTCAGTCCGTGGCTTCGGAGG < 41bp 0.753961850357532 0.515599294504401 0.59294134 0.31549242 prediction 0.476725111706263 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70260704 chr11:70260707 synonymous SNV . 0 24 hm5C_associated_SNPs_70111 0 0 1 0 2 CTTN chr11:70260758 5'GT 70260758 Upstream 52bp
chr1 177245501 177245501 1 + G A STAD 177245498 + 177245478 177245518 41 ACTGCCCTGATGCTGACATCCAGGCCATGGAGGACAGCCTG ACTGCCCTGATGCTGACATCCAGACCATGGAGGACAGCCTG < 41bp 0.748346951017006 0.509986194890385 0.89193356 0.8534415 prediction 0.476721512253242 Functional Loss - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177245498 chr1:177245501 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_70114 0 0 0 0 1 BRINP2 chr1:177245570 5'GT 177245570 Upstream 70bp
chr22 50647059 50647059 1 + G A UCEC 50647056 + 50647036 50647076 41 ACGACATTCGAGTGCAGCTGCTCGACTATGTCATCAGCTCC ACGACATTCGAGTGCAGCTGCTCAACTATGTCATCAGCTCC < 41bp 0.755239527170723 0.516885086815022 0.26219368 0.19326079 prediction 0.476708880711402 Functional Loss - SELENOO ENSG00000073169 CDS Human protein_coding chr22:50647056 chr22:50647059 unknown 0.128 1 24 hm5C_associated_SNPs_70117 0 0 1 0 2 SELENOO chr22:50646965 3'AG 50646965 Downstream 95bp
chr22 50647059 50647059 1 + G A UCEC 50647056 + 50647036 50647076 41 ACGACATTCGAGTGCAGCTGCTCGACTATGTCATCAGCTCC ACGACATTCGAGTGCAGCTGCTCAACTATGTCATCAGCTCC < 41bp 0.755239527170723 0.516885086815022 0.26219368 0.19326079 prediction 0.476708880711402 Functional Loss - SELENOO ENSG00000073169 CDS Human protein_coding chr22:50647056 chr22:50647059 unknown 0.128 1 24 hm5C_associated_SNPs_70117 0 0 1 0 2 SELENOO chr22:50647145 5'GT 50647145 Upstream 87bp
chr7 31123774 31123774 1 + G T LUAD 31123772 + 31123752 31123792 41 GCAGACATGGGAGTGGTGAGCCGGAACTGCACGGAGGATGG GCAGACATGGGAGTGGTGAGCCTGAACTGCACGGAGGATGG < 41bp 0.738352054370797 0.3771103256382 0.43751383 0.25342828 prediction 0.476704108741595 Functional Loss - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31123772 chr7:31123774 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_70118 0 0 0 0 2 ADCYAP1R1 chr7:31123756 3'AG 31123756 Downstream 19bp
chr7 31123774 31123774 1 + G T LUAD 31123772 + 31123752 31123792 41 GCAGACATGGGAGTGGTGAGCCGGAACTGCACGGAGGATGG GCAGACATGGGAGTGGTGAGCCTGAACTGCACGGAGGATGG < 41bp 0.738352054370797 0.3771103256382 0.43751383 0.25342828 prediction 0.476704108741595 Functional Loss - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31123772 chr7:31123774 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_70118 0 0 0 0 2 ADCYAP1R1 chr7:31123865 5'GT 31123865 Upstream 92bp
chr7 102040047 102040047 1 + C T SKCM 102040045 + 102040025 102040065 41 TCCACGTGTACAGACATCTGCGCCGGAGAGAATATCAGCGA TCCACGTGTACAGACATCTGCGTCGGAGAGAATATCAGCGA < 41bp 0.738340391034199 0.457127822649593 0.35615945 0.26067728 prediction 0.476680782068398 Functional Loss - PRKRIP1 ENSG00000128563 CDS Human protein_coding chr7:102040045 chr7:102040047 synonymous SNV . 0 23 hm5C_associated_SNPs_70119 0 0 1 0 2 PRKRIP1 chr7:102039995 3'AG 102039995 Downstream 53bp
chr7 102040047 102040047 1 + C T SKCM 102040045 + 102040025 102040065 41 TCCACGTGTACAGACATCTGCGCCGGAGAGAATATCAGCGA TCCACGTGTACAGACATCTGCGTCGGAGAGAATATCAGCGA < 41bp 0.738340391034199 0.457127822649593 0.35615945 0.26067728 prediction 0.476680782068398 Functional Loss - PRKRIP1 ENSG00000128563 CDS Human protein_coding chr7:102040045 chr7:102040047 synonymous SNV . 0 23 hm5C_associated_SNPs_70119 0 0 1 0 2 PRKRIP1 chr7:102040095 5'GT 102040095 Upstream 49bp
chr1 164789343 164789343 1 + A T ESCA 164789339 + 164789319 164789359 41 TTCTTTTAACATGTCAAACTCTGGAGATTTGTTCATGAGCG TTCTTTTAACATGTCAAACTCTGGTGATTTGTTCATGAGCG < 41bp 0.738339551653094 0.417942543438265 0.47664815 0.3565636 prediction 0.476679103306189 Functional Loss - PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789339 chr1:164789343 synonymous SNV . 0 25 hm5C_associated_SNPs_70120 0 0 0 0 2 PBX1 chr1:164789309 3'AG 164789309 Downstream 35bp
chr1 164789343 164789343 1 + A T ESCA 164789339 + 164789319 164789359 41 TTCTTTTAACATGTCAAACTCTGGAGATTTGTTCATGAGCG TTCTTTTAACATGTCAAACTCTGGTGATTTGTTCATGAGCG < 41bp 0.738339551653094 0.417942543438265 0.47664815 0.3565636 prediction 0.476679103306189 Functional Loss - PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789339 chr1:164789343 synonymous SNV . 0 25 hm5C_associated_SNPs_70120 0 0 0 0 2 PBX1 chr1:164789421 5'GT 164789421 Upstream 79bp
chr16 1591962 1591962 1 + G A rs2076443 1591959 + 1591939 1591979 41 CGCGCCTGCAACCTGGTGGCCACGGCCGCGCTCACCGCAGG CGCGCCTGCAACCTGGTGGCCACAGCCGCGCTCACCGCAGG < 41bp 0.749438474794049 0.511099407064419 0.35286742 0.7379468 prediction 0.47667813545926 Functional Loss - TMEM204 ENSG00000131634 CDS Human protein_coding chr16:1591959 chr16:1591962 synonymous SNV . 0 24 hm5C_associated_SNPs_70122 0 0 0 0 1 TMEM204 chr16:1591922 3'AG 1591922 Downstream 41bp
chrX 64955264 64955264 1 + G T DLBC 64955261 + 64955241 64955281 41 AGCAGATGAAGGCACAGGCCCGGGAGGAGAAGCACCAGAAG AGCAGATGAAGGCACAGGCCCGGTAGGAGAAGCACCAGAAG < 41bp 0.925300282268562 0.686966949074301 0.89289975 0.39386332 prediction 0.476666666388523 Functional Loss - MSN ENSG00000147065 CDS Human protein_coding chrX:64955261 chrX:64955264 stopgain 1.000 1 24 hm5C_associated_SNPs_70123 0 0 1 0 1 MSN chrX:64955292 5'GT 64955292 Upstream 29bp
chr9 135073943 135073943 1 + G T PRAD 135073941 + 135073921 135073961 41 TGGGCGGCACCTATGTGCAGCGGGAGAACCTCTACAAGTAC TGGGCGGCACCTATGTGCAGCGTGAGAACCTCTACAAGTAC < 41bp 0.738316224962932 0.391730482347156 0.40341228 0.040803432 prediction 0.476632449925865 Functional Loss - NTNG2 ENSG00000196358 CDS Human protein_coding chr9:135073941 chr9:135073943 synonymous SNV . 0 23 hm5C_associated_SNPs_70130 0 0 0 0 1 NTNG2 chr9:135073996 5'GT 135073996 Upstream 54bp
chr2 155566119 155566119 1 + G T LUSC 155566116 + 155566096 155566136 41 TTTCTGTGTGCTTGTCTAGTCTCGGCAGACACCTGAGGGTG TTTCTGTGTGCTTGTCTAGTCTCTGCAGACACCTGAGGGTG < 41bp 0.73831555315725 0.355759735613261 0.077020496 0.17148134 prediction 0.4766311063145 Functional Loss - KCNJ3 ENSG00000162989 CDS Human protein_coding chr2:155566116 chr2:155566119 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_70132 0 0 0 0 1 KCNJ3 chr2:155566115 3'AG 155566115 Downstream 5bp
chr2 155566118 155566118 1 + C T STAD 155566116 + 155566096 155566136 41 TTTCTGTGTGCTTGTCTAGTCTCGGCAGACACCTGAGGGTG TTTCTGTGTGCTTGTCTAGTCTTGGCAGACACCTGAGGGTG < 41bp 0.73831555315725 0.457665211483621 0.077020496 0.12696713 prediction 0.4766311063145 Functional Loss - KCNJ3 ENSG00000162989 CDS Human protein_coding chr2:155566116 chr2:155566118 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_70133 0 0 0 0 1 KCNJ3 chr2:155566115 3'AG 155566115 Downstream 4bp
chr19 54387495 54387495 1 + G T LUAD 54387493 + 54387473 54387513 41 CGCTGGGAAGGGCCCCCAGACGGACGTGAGTGCTCGGACAC CGCTGGGAAGGGCCCCCAGACGTACGTGAGTGCTCGGACAC < 41bp 0.738314971321631 0.388233678668025 0.38614258 0.11289802 prediction 0.476629942643261 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54387493 chr19:54387495 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_70134 0 0 0 0 2 PRKCG chr19:54387415 3'AG 54387415 Downstream 81bp
chr19 54387495 54387495 1 + G T LUAD 54387493 + 54387473 54387513 41 CGCTGGGAAGGGCCCCCAGACGGACGTGAGTGCTCGGACAC CGCTGGGAAGGGCCCCCAGACGTACGTGAGTGCTCGGACAC < 41bp 0.738314971321631 0.388233678668025 0.38614258 0.11289802 prediction 0.476629942643261 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54387493 chr19:54387495 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_70134 0 0 0 0 2 PRKCG chr19:54387497 5'GT 54387497 Upstream 3bp
chr8 136659260 136659260 1 + G T UCEC 136659257 + 136659237 136659277 41 GCAAGAAGAGTGGACTAACTCAAGACACAAGGCACCTTCAG GCAAGAAGAGTGGACTAACTCAATACACAAGGCACCTTCAG < 41bp 0.915668179212552 0.677354836645989 0.88880634 0.18775895 prediction 0.476626685133126 Functional Loss - KHDRBS3 ENSG00000131773 CDS Human protein_coding chr8:136659257 chr8:136659260 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_70135 0 0 0 4 1 KHDRBS3 chr8:136659236 3'AG 136659236 Downstream 25bp
chr16 89212437 89212437 1 + G T LUAD 89212434 + 89212414 89212454 41 GAAGGACACTCACTGTCCCACAGGGAGCTCAAAGAGTGGGC GAAGGACACTCACTGTCCCACAGTGAGCTCAAAGAGTGGGC < 41bp 0.738313061395538 0.339942633775861 0.44528806 0.037231565 prediction 0.476626122791076 Functional Loss - ACSF3 ENSG00000176715 CDS Human protein_coding chr16:89212434 chr16:89212437 nonsynonymous SNV 0.738 0 24 hm5C_associated_SNPs_70136 0 0 1 0 2 ACSF3 chr16:89212346 3'AG 89212346 Downstream 92bp
chr16 89212437 89212437 1 + G T LUAD 89212434 + 89212414 89212454 41 GAAGGACACTCACTGTCCCACAGGGAGCTCAAAGAGTGGGC GAAGGACACTCACTGTCCCACAGTGAGCTCAAAGAGTGGGC < 41bp 0.738313061395538 0.339942633775861 0.44528806 0.037231565 prediction 0.476626122791076 Functional Loss - ACSF3 ENSG00000176715 CDS Human protein_coding chr16:89212434 chr16:89212437 nonsynonymous SNV 0.738 0 24 hm5C_associated_SNPs_70136 0 0 1 0 2 ACSF3 chr16:89212457 5'GT 89212457 Upstream 21bp
chr9 140508783 140508783 1 + C T UCEC 140508781 + 140508761 140508801 41 ATAAGGCCAAGCGCTGGATCCACGACGTACGGACCATTGCG ATAAGGCCAAGCGCTGGATCCATGACGTACGGACCATTGCG < 41bp 0.810977387163768 0.572664857780374 0.4331475 0.3886586 prediction 0.476625058766789 Functional Loss - ARRDC1 ENSG00000197070 CDS Human protein_coding chr9:140508781 chr9:140508783 synonymous SNV . 0 23 hm5C_associated_SNPs_70137 0 0 0 0 1 ARRDC1 chr9:140508751 3'AG 140508751 Downstream 33bp
chr7 120969831 120969831 1 + G A LUSC 120969828 + 120969808 120969848 41 ACCGCCGCCGCCACTACCGCCCCGATGGGCGCCAGCCCCCT ACCGCCGCCGCCACTACCGCCCCAATGGGCGCCAGCCCCCT < 41bp 0.759793546798744 0.521483180135174 0.1453563 0.12657762 prediction 0.476620733327141 Functional Loss - WNT16 ENSG00000002745 CDS Human protein_coding chr7:120969828 chr7:120969831 synonymous SNV . 0 24 hm5C_associated_SNPs_70141 0 0 0 0 1 WNT16 chr7:120969871 5'GT 120969871 Upstream 41bp
chr22 25291202 25291202 1 + T C LAML 25291201 + 25291181 25291221 41 TTTTCTCAGTCCTCCCAGAGCTGCAGTTCGGGCCGCCAGAA TTTTCTCAGTCCTCCCAGAGCCGCAGTTCGGGCCGCCAGAA < 41bp 0.738308667650485 0.470722470581727 0.1863546 0.3684632 prediction 0.47661733530097 Functional Loss - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25291201 chr22:25291202 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_70142 0 0 0 0 2 SGSM1 chr22:25291190 3'AG 25291190 Downstream 13bp
chr22 25291202 25291202 1 + T C LAML 25291201 + 25291181 25291221 41 TTTTCTCAGTCCTCCCAGAGCTGCAGTTCGGGCCGCCAGAA TTTTCTCAGTCCTCCCAGAGCCGCAGTTCGGGCCGCCAGAA < 41bp 0.738308667650485 0.470722470581727 0.1863546 0.3684632 prediction 0.47661733530097 Functional Loss - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25291201 chr22:25291202 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_70142 0 0 0 0 2 SGSM1 chr22:25291258 5'GT 25291258 Upstream 57bp
chr2 70015272 70015272 1 + C T UCEC 70015270 + 70015250 70015290 41 TGAGGAAGGCCATGAAAGGGCTCGGTATGTGTCCTGCTGGA TGAGGAAGGCCATGAAAGGGCTTGGTATGTGTCCTGCTGGA < 41bp 0.753739738058698 0.515435160427671 0.13584256 0.11400959 prediction 0.476609155262054 Functional Loss - ANXA4 ENSG00000196975 CDS Human protein_coding chr2:70015270 chr2:70015272 synonymous SNV . 0 23 hm5C_associated_SNPs_70143 0 0 1 1 2 ANXA4 chr2:70015186 3'AG 70015186 Downstream 87bp
chr2 70015272 70015272 1 + C T UCEC 70015270 + 70015250 70015290 41 TGAGGAAGGCCATGAAAGGGCTCGGTATGTGTCCTGCTGGA TGAGGAAGGCCATGAAAGGGCTTGGTATGTGTCCTGCTGGA < 41bp 0.753739738058698 0.515435160427671 0.13584256 0.11400959 prediction 0.476609155262054 Functional Loss - ANXA4 ENSG00000196975 CDS Human protein_coding chr2:70015270 chr2:70015272 synonymous SNV . 0 23 hm5C_associated_SNPs_70143 0 0 1 1 2 ANXA4 chr2:70015273 5'GT 70015273 Upstream 2bp
chrX 118544222 118544222 1 + G T LUSC 118544219 + 118544199 118544239 41 GGAGAAAATCTGGAACGGACCCCGAGATCAGTTCTCTCTCC GGAGAAAATCTGGAACGGACCCCTAGATCAGTTCTCTCTCC < 41bp 0.738303793263723 0.350909026896816 0.114346 0.06332421 prediction 0.476607586527446 Functional Loss - SLC25A43 ENSG00000077713 CDS Human protein_coding chrX:118544219 chrX:118544222 nonsynonymous SNV 0.976 0 24 hm5C_associated_SNPs_70144 0 0 0 0 1 SLC25A43 chrX:118544153 3'AG 118544153 Downstream 70bp
chr11 93104417 93104417 1 + G T UCEC 93104414 + 93104394 93104434 41 ATGAAAATCAGAAGCTCTTGCAAGAACTGAAAATGTACCAA ATGAAAATCAGAAGCTCTTGCAATAACTGAAAATGTACCAA < 41bp 0.738292633825187 0.368450790232996 0.42313194 0.12115976 prediction 0.476585267650373 Functional Loss - DEUP1 ENSG00000165325 CDS Human protein_coding chr11:93104414 chr11:93104417 stopgain 1.000 1 24 hm5C_associated_SNPs_70148 0 0 0 0 1 DEUP1 chr11:93104446 5'GT 93104446 Upstream 30bp
chr12 12871794 12871794 1 + G T BLCA 12871792 + 12871772 12871812 41 AAACAAAAGAGCCAACAGAACAGAAGAAAATGTTTCAGACG AAACAAAAGAGCCAACAGAACATAAGAAAATGTTTCAGACG < 41bp 0.738287140119442 0.401560099252965 0.8885798 0.14917871 prediction 0.476574280238883 Functional Loss - CDKN1B ENSG00000111276 CDS Human protein_coding chr12:12871792 chr12:12871794 stopgain 1.000 0 23 hm5C_associated_SNPs_70149 0 0 1 0 2 CDKN1B chr12:12871759 3'AG 12871759 Downstream 36bp
chr12 12871794 12871794 1 + G T BLCA 12871792 + 12871772 12871812 41 AAACAAAAGAGCCAACAGAACAGAAGAAAATGTTTCAGACG AAACAAAAGAGCCAACAGAACATAAGAAAATGTTTCAGACG < 41bp 0.738287140119442 0.401560099252965 0.8885798 0.14917871 prediction 0.476574280238883 Functional Loss - CDKN1B ENSG00000111276 CDS Human protein_coding chr12:12871792 chr12:12871794 stopgain 1.000 0 23 hm5C_associated_SNPs_70149 0 0 1 0 2 CDKN1B chr12:12871888 5'GT 12871888 Upstream 95bp
chr16 842508 842508 1 + G T rs34595992 842506 + 842486 842526 41 GGAGGTGGGGCCACAGGGCCCGGCTGTGCCTTCGGGAGGCG GGAGGTGGGGCCACAGGGCCCGTCTGTGCCTTCGGGAGGCG < 41bp 0.738285376384956 0.39432863207456 0.36000672 0.069074124 prediction 0.476570752769911 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842506 chr16:842508 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_70150 0 0 1 0 2 CHTF18 chr16:842439 3'AG 842439 Downstream 70bp
chr16 842508 842508 1 + G T rs34595992 842506 + 842486 842526 41 GGAGGTGGGGCCACAGGGCCCGGCTGTGCCTTCGGGAGGCG GGAGGTGGGGCCACAGGGCCCGTCTGTGCCTTCGGGAGGCG < 41bp 0.738285376384956 0.39432863207456 0.36000672 0.069074124 prediction 0.476570752769911 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842506 chr16:842508 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_70150 0 0 1 0 2 CHTF18 chr16:842590 5'GT 842590 Upstream 83bp
chr1 43647222 43647222 1 + G T UCEC 43647219 + 43647199 43647239 41 TTGCAGGCTCAGAGAAGAGTCAGGGCATGTTGGCCTTGTCC TTGCAGGCTCAGAGAAGAGTCAGTGCATGTTGGCCTTGTCC < 41bp 0.738284538744014 0.337696867923161 0.91884613 0.38428503 prediction 0.476569077488027 Functional Loss - CFAP57 ENSG00000243710 CDS Human protein_coding chr1:43647219 chr1:43647222 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_70152 0 0 0 0 1 CFAP57 chr1:43647205 3'AG 43647205 Downstream 18bp
chr11 63967673 63967673 1 + G T COAD 63967671 + 63967651 63967691 41 CCAGGCCATGAAGCATTATACAGAAGCCATCAAAAGGAACC CCAGGCCATGAAGCATTATACATAAGCCATCAAAAGGAACC < 41bp 0.738283601489599 0.38783003680858 0.61820626 0.053887248 prediction 0.476567202979198 Functional Loss - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63967671 chr11:63967673 stopgain 1.000 1 23 hm5C_associated_SNPs_70153 0 0 1 0 2 STIP1 chr11:63967641 3'AG 63967641 Downstream 33bp
chr11 63967673 63967673 1 + G T COAD 63967671 + 63967651 63967691 41 CCAGGCCATGAAGCATTATACAGAAGCCATCAAAAGGAACC CCAGGCCATGAAGCATTATACATAAGCCATCAAAAGGAACC < 41bp 0.738283601489599 0.38783003680858 0.61820626 0.053887248 prediction 0.476567202979198 Functional Loss - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63967671 chr11:63967673 stopgain 1.000 1 23 hm5C_associated_SNPs_70153 0 0 1 0 2 STIP1 chr11:63967765 5'GT 63967765 Upstream 93bp
chr1 17559420 17559420 1 + C T UCEC 17559418 + 17559398 17559438 41 CCGCCCGTCACGGTGGGCGGCACGGAATACCCCCTGGGCCG CCGCCCGTCACGGTGGGCGGCATGGAATACCCCCTGGGCCG < 41bp 0.797715880730847 0.559437245834192 0.36793 0.3062666 prediction 0.47655726979331 Functional Loss - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17559418 chr1:17559420 nonsynonymous SNV 0.082 1 23 hm5C_associated_SNPs_70159 0 0 0 0 1 PADI1 chr1:17559465 5'GT 17559465 Upstream 46bp
chr12 6554601 6554601 1 + G A COAD 6554598 + 6554578 6554618 41 CTCTCCTCCCAGGAACATTCCTCGTGAAGGACTGTGACCAG CTCTCCTCCCAGGAACATTCCTCATGAAGGACTGTGACCAG < 41bp 0.738762217670622 0.500485796189044 0.0244627 0.009337693 prediction 0.476552842963156 Functional Loss - CD27 ENSG00000139193 CDS Human protein_coding chr12:6554598 chr12:6554601 nonsynonymous SNV 0.350 4 24 hm5C_associated_SNPs_70162 0 0 0 0 1 CD27 chr12:6554590 3'AG 6554590 Downstream 12bp
chr1 161722969 161722969 1 + G A STAD 161722966 + 161722946 161722986 41 ACCATCTTCCATGCTTACCACAGGGAGGCAAGCTCAATGTA ACCATCTTCCATGCTTACCACAGAGAGGCAAGCTCAATGTA < 41bp 0.748322050007161 0.510048407740444 0.6766081 0.2248905 prediction 0.476547284533434 Functional Loss - DUSP12 ENSG00000081721 CDS Human protein_coding chr1:161722966 chr1:161722969 nonsynonymous SNV 0.709 0 24 hm5C_associated_SNPs_70165 0 0 1 0 1 DUSP12 chr1:161723051 5'GT 161723051 Upstream 83bp
chr19 48229168 48229168 1 + C T BLCA 48229166 + 48229146 48229186 41 CTGGAGATCTCGGACGAGTTCTCAGAGGCCATCGGCGCGTT CTGGAGATCTCGGACGAGTTCTTAGAGGCCATCGGCGCGTT < 41bp 0.738272814718373 0.458648657982953 0.22570106 0.2523495 prediction 0.476545629436745 Functional Loss - EHD2 ENSG00000024422 CDS Human protein_coding chr19:48229166 chr19:48229168 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_70166 0 0 1 0 1 EHD2 chr19:48229069 3'AG 48229069 Downstream 100bp
chr16 816475 816475 1 + C T UCEC 816473 + 816453 816493 41 TGCTTGAAGTCAACAAAGGGCACGAAATGAGTCCTCAGGTG TGCTTGAAGTCAACAAAGGGCATGAAATGAGTCCTCAGGTG < 41bp 0.778262993518544 0.539990241977272 0.1638459 0.18233708 prediction 0.476545503082544 Functional Loss - MSLN ENSG00000102854 CDS Human protein_coding chr16:816473 chr16:816475 synonymous SNV . 0 23 hm5C_associated_SNPs_70167 0 0 0 0 1 MSLN chr16:816490 5'GT 816490 Upstream 16bp
chr17 75209484 75209484 1 + G T LUSC 75209482 + 75209462 75209502 41 TGCGCCGCCAGCAGCCTTCCCCGGGTGGACGACGTGCTTGC TGCGCCGCCAGCAGCCTTCCCCTGGTGGACGACGTGCTTGC < 41bp 0.738271256715175 0.386951322096303 0.9094659 0.39437592 prediction 0.47654251343035 Functional Loss - SEC14L1 ENSG00000129657 CDS Human protein_coding chr17:75209482 chr17:75209484 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_70168 0 0 0 0 1 SEC14L1 chr17:75209574 5'GT 75209574 Upstream 91bp
chr7 31123775 31123775 1 + G A COAD 31123772 + 31123752 31123792 41 GCAGACATGGGAGTGGTGAGCCGGAACTGCACGGAGGATGG GCAGACATGGGAGTGGTGAGCCGAAACTGCACGGAGGATGG < 41bp 0.738352054370797 0.500090049283867 0.43751383 0.25263914 prediction 0.47652401017386 Functional Loss - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31123772 chr7:31123775 synonymous SNV . 0 24 hm5C_associated_SNPs_70174 0 0 0 0 2 ADCYAP1R1 chr7:31123756 3'AG 31123756 Downstream 20bp
chr7 31123775 31123775 1 + G A COAD 31123772 + 31123752 31123792 41 GCAGACATGGGAGTGGTGAGCCGGAACTGCACGGAGGATGG GCAGACATGGGAGTGGTGAGCCGAAACTGCACGGAGGATGG < 41bp 0.738352054370797 0.500090049283867 0.43751383 0.25263914 prediction 0.47652401017386 Functional Loss - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31123772 chr7:31123775 synonymous SNV . 0 24 hm5C_associated_SNPs_70174 0 0 0 0 2 ADCYAP1R1 chr7:31123865 5'GT 31123865 Upstream 91bp
chr2 26677571 26677571 1 + C T rs79027679 26677569 + 26677549 26677589 41 GTGCGTGACAACTCCAAGGACTCGGAGTACTGGCAGGCCCT GTGCGTGACAACTCCAAGGACTTGGAGTACTGGCAGGCCCT < 41bp 0.738260756617143 0.460347741146387 0.3064493 0.33244646 prediction 0.476521513234286 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26677569 chr2:26677571 nonsynonymous SNV 0.193 1 23 hm5C_associated_SNPs_70175 1 0 0 0 2 DRC1 chr2:26677515 3'AG 26677515 Downstream 57bp
chr2 26677571 26677571 1 + C T rs79027679 26677569 + 26677549 26677589 41 GTGCGTGACAACTCCAAGGACTCGGAGTACTGGCAGGCCCT GTGCGTGACAACTCCAAGGACTTGGAGTACTGGCAGGCCCT < 41bp 0.738260756617143 0.460347741146387 0.3064493 0.33244646 prediction 0.476521513234286 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26677569 chr2:26677571 nonsynonymous SNV 0.193 1 23 hm5C_associated_SNPs_70175 1 0 0 0 2 DRC1 chr2:26677658 5'GT 26677658 Upstream 88bp
chr3 183887822 183887822 1 + C T UCEC 183887820 + 183887800 183887840 41 CCAACCTGTCTCTCCACGATCACGATGGCTCCAGTGGCGCC CCAACCTGTCTCTCCACGATCATGATGGCTCCAGTGGCGCC < 41bp 0.831605289610507 0.593348414983634 0.85588443 0.9241102 prediction 0.476513749253747 Functional Loss - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183887820 chr3:183887822 synonymous SNV . 0 23 hm5C_associated_SNPs_70176 0 0 1 0 1 DVL3 chr3:183887794 3'AG 183887794 Downstream 29bp
chr11 113268024 113268024 1 + G T STAD 113268022 + 113268002 113268042 41 CCAGAGAGCAAGGCCCTGGCCAGGAAGGTGTCCTGCAAGCT CCAGAGAGCAAGGCCCTGGCCATGAAGGTGTCCTGCAAGCT < 41bp 0.901172654082843 0.662920337245031 0.788839 0.18454435 prediction 0.476504633675623 Functional Loss - ANKK1 ENSG00000170209 CDS Human protein_coding chr11:113268022 chr11:113268024 nonsynonymous SNV 0.296 1 23 hm5C_associated_SNPs_70179 0 0 0 0 2 ANKK1 chr11:113267946 3'AG 113267946 Downstream 79bp
chr11 113268024 113268024 1 + G T STAD 113268022 + 113268002 113268042 41 CCAGAGAGCAAGGCCCTGGCCAGGAAGGTGTCCTGCAAGCT CCAGAGAGCAAGGCCCTGGCCATGAAGGTGTCCTGCAAGCT < 41bp 0.901172654082843 0.662920337245031 0.788839 0.18454435 prediction 0.476504633675623 Functional Loss - ANKK1 ENSG00000170209 CDS Human protein_coding chr11:113268022 chr11:113268024 nonsynonymous SNV 0.296 1 23 hm5C_associated_SNPs_70179 0 0 0 0 2 ANKK1 chr11:113268064 5'GT 113268064 Upstream 41bp
chr4 108911132 108911132 1 + C T BLCA 108911130 + 108911110 108911150 41 TTCATGCGTTCCGTGTCCTCCTCGTCCACCGCCTCGGCCTC TTCATGCGTTCCGTGTCCTCCTTGTCCACCGCCTCGGCCTC < 41bp 0.738251749750659 0.493122719712726 0.3353658 0.2098814 prediction 0.476503499501317 Functional Loss - HADH ENSG00000138796 CDS Human protein_coding chr4:108911130 chr4:108911132 nonsynonymous SNV 0.993 1 23 hm5C_associated_SNPs_70180 0 0 1 0 1 HADH chr4:108911220 5'GT 108911220 Upstream 89bp
chrX 154306899 154306899 1 + T C GBM 154306898 + 154306878 154306918 41 TTGACAGACACACAGGTTGGCTGAACTGACAGGCCGCCCCA TTGACAGACACACAGGTTGGCCGAACTGACAGGCCGCCCCA < 41bp 0.738860026442414 0.500613812104786 0.2702266 0.2847658 prediction 0.476492428675256 Functional Loss - BRCC3 ENSG00000185515 CDS Human protein_coding chrX:154306898 chrX:154306899 synonymous SNV . 0 22 hm5C_associated_SNPs_70183 0 0 1 0 1 BRCC3 chrX:154306978 5'GT 154306978 Upstream 80bp
chr7 157046743 157046743 1 + G A UCEC 157046740 + 157046720 157046760 41 GTGGCAGACTACAGGCTGAACAGGCAGATCCGCCAGCACTG GTGGCAGACTACAGGCTGAACAGACAGATCCGCCAGCACTG < 41bp 0.738238403799271 0.489650916683053 0.7998879 0.38732594 prediction 0.476476807598542 Functional Loss - UBE3C ENSG00000009335 CDS Human protein_coding chr7:157046740 chr7:157046743 synonymous SNV . 0 24 hm5C_associated_SNPs_70185 0 0 1 0 2 UBE3C chr7:157046648 3'AG 157046648 Downstream 96bp
chr7 157046743 157046743 1 + G A UCEC 157046740 + 157046720 157046760 41 GTGGCAGACTACAGGCTGAACAGGCAGATCCGCCAGCACTG GTGGCAGACTACAGGCTGAACAGACAGATCCGCCAGCACTG < 41bp 0.738238403799271 0.489650916683053 0.7998879 0.38732594 prediction 0.476476807598542 Functional Loss - UBE3C ENSG00000009335 CDS Human protein_coding chr7:157046740 chr7:157046743 synonymous SNV . 0 24 hm5C_associated_SNPs_70185 0 0 1 0 2 UBE3C chr7:157046836 5'GT 157046836 Upstream 94bp
chr19 42827780 42827780 1 + G A LUSC 42827777 + 42827757 42827797 41 CCAACAAGAACTTCCCGTACCACGTGCGCACGTCGCAGATC CCAACAAGAACTTCCCGTACCACATGCGCACGTCGCAGATC < 41bp 0.73842146232323 0.500186661996181 0.07347715 0.0749591 prediction 0.476469600654097 Functional Loss - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42827777 chr19:42827780 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_70188 0 0 0 0 1 TMEM145 chr19:42827735 3'AG 42827735 Downstream 46bp
chr14 103059661 103059661 1 + C T SARC 103059659 + 103059639 103059679 41 CGGTGGTGCCCGACTTCGACCCCGGTGAGTAGCGGCCCCGG CGGTGGTGCCCGACTTCGACCCTGGTGAGTAGCGGCCCCGG < 41bp 0.763529222357484 0.52529498322713 0.19237232 0.19779712 prediction 0.476468478260708 Functional Loss - RCOR1 ENSG00000089902 CDS Human protein_coding chr14:103059659 chr14:103059661 synonymous SNV . 0 23 hm5C_associated_SNPs_70190 0 0 1 0 2 RCOR1 chr14:103059603 3'AG 103059603 Downstream 59bp
chr14 103059661 103059661 1 + C T SARC 103059659 + 103059639 103059679 41 CGGTGGTGCCCGACTTCGACCCCGGTGAGTAGCGGCCCCGG CGGTGGTGCCCGACTTCGACCCTGGTGAGTAGCGGCCCCGG < 41bp 0.763529222357484 0.52529498322713 0.19237232 0.19779712 prediction 0.476468478260708 Functional Loss - RCOR1 ENSG00000089902 CDS Human protein_coding chr14:103059659 chr14:103059661 synonymous SNV . 0 23 hm5C_associated_SNPs_70190 0 0 1 0 2 RCOR1 chr14:103059662 5'GT 103059662 Upstream 2bp
chr9 139840549 139840549 1 + G A BLCA 139840546 + 139840526 139840566 41 CTCTGCCCCAGCCCGAGACGCCCGAGGGGCTGTGCACGTGG CTCTGCCCCAGCCCGAGACGCCCAAGGGGCTGTGCACGTGG < 41bp 0.770057151217241 0.531828444250704 0.1537632 0.07861683 prediction 0.476457413933076 Functional Loss - C8G ENSG00000176919 CDS Human protein_coding chr9:139840546 chr9:139840549 nonsynonymous SNV 0.017 1 24 hm5C_associated_SNPs_70192 0 0 1 0 2 C8G chr9:139840537 3'AG 139840537 Downstream 13bp
chr9 139840549 139840549 1 + G A BLCA 139840546 + 139840526 139840566 41 CTCTGCCCCAGCCCGAGACGCCCGAGGGGCTGTGCACGTGG CTCTGCCCCAGCCCGAGACGCCCAAGGGGCTGTGCACGTGG < 41bp 0.770057151217241 0.531828444250704 0.1537632 0.07861683 prediction 0.476457413933076 Functional Loss - C8G ENSG00000176919 CDS Human protein_coding chr9:139840546 chr9:139840549 nonsynonymous SNV 0.017 1 24 hm5C_associated_SNPs_70192 0 0 1 0 2 C8G chr9:139840644 5'GT 139840644 Upstream 96bp
chr5 5303721 5303721 1 + G A COAD 5303718 + 5303698 5303738 41 GTGGGAAGGGGTGGAGGAAGCGGGCAGTGGCCTGTAAGAGC GTGGGAAGGGGTGGAGGAAGCGGACAGTGGCCTGTAAGAGC < 41bp 0.763340910520624 0.525114316332317 0.9020406 0.76447535 prediction 0.476453188376613 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5303718 chr5:5303721 nonsynonymous SNV 0.400 0 24 hm5C_associated_SNPs_70194 0 0 0 0 1 ADAMTS16 chr5:5303685 3'AG 5303685 Downstream 37bp
chr3 186386763 186386763 1 + G T UCEC 186386760 + 186386740 186386780 41 ATTACTTAGTCTTAGATGTGCAAGAATCGGACTGTTCGGTC ATTACTTAGTCTTAGATGTGCAATAATCGGACTGTTCGGTC < 41bp 0.738225094024143 0.349008921428082 0.2673444 0.15427455 prediction 0.476450188048286 Functional Loss - HRG ENSG00000113905 CDS Human protein_coding chr3:186386760 chr3:186386763 stopgain 0.680 1 24 hm5C_associated_SNPs_70195 0 0 0 0 2 HRG chr3:186386724 3'AG 186386724 Downstream 40bp
chr3 186386763 186386763 1 + G T UCEC 186386760 + 186386740 186386780 41 ATTACTTAGTCTTAGATGTGCAAGAATCGGACTGTTCGGTC ATTACTTAGTCTTAGATGTGCAATAATCGGACTGTTCGGTC < 41bp 0.738225094024143 0.349008921428082 0.2673444 0.15427455 prediction 0.476450188048286 Functional Loss - HRG ENSG00000113905 CDS Human protein_coding chr3:186386760 chr3:186386763 stopgain 0.680 1 24 hm5C_associated_SNPs_70195 0 0 0 0 2 HRG chr3:186386840 5'GT 186386840 Upstream 78bp
chr16 31500623 31500623 1 + G A COAD 31500620 + 31500600 31500640 41 TGCTCTGGCCTCCTCACCCTCACGGTCTCCCTGTGCACCGC TGCTCTGGCCTCCTCACCCTCACAGTCTCCCTGTGCACCGC < 41bp 0.784615092014807 0.546392974316996 0.3558972 0.15439531 prediction 0.476444235395623 Functional Loss - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500620 chr16:31500623 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_70196 0 0 0 0 1 SLC5A2 chr16:31500659 5'GT 31500659 Upstream 37bp
chr17 43345466 43345466 1 + C T rs143372338 43345464 + 43345444 43345484 41 TGAAAACAGCCCTGGGGCTACACCAACTCAAGAGCTCCCAG TGAAAACAGCCCTGGGGCTACATCAACTCAAGAGCTCCCAG < 41bp 0.75381379322904 0.515592835195427 0.3257724 0.31049675 prediction 0.476441916067226 Functional Loss - MAP3K14-AS1 ENSG00000267278 ncRNA_exonic Human antisense chr17:43345464 chr17:43345466 . . 0 23 hm5C_associated_SNPs_70197 0 0 0 0 1 MAP3K14-AS1 chr17:43345376 3'AG 43345376 Downstream 91bp
chr14 58874072 58874072 1 + C T UCEC 58874070 + 58874050 58874090 41 ACAGAATGGGGATTCAACACCTCGGCAATGCCCTTTTAGTG ACAGAATGGGGATTCAACACCTTGGCAATGCCCTTTTAGTG < 41bp 0.738220945239774 0.461648473851239 0.094091505 0.07560754 prediction 0.476441890479548 Functional Loss - TOMM20L ENSG00000196860 CDS Human protein_coding chr14:58874070 chr14:58874072 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_70198 0 0 0 0 1 TOMM20L chr14:58874044 3'AG 58874044 Downstream 29bp
chr8 24323244 24323244 1 + C T rs34017992 24323242 + 24323222 24323262 41 TTTACCAAGGATCCATAGTACACGAATATGATTCAGCTGCC TTTACCAAGGATCCATAGTACATGAATATGATTCAGCTGCC < 41bp 0.819318413931128 0.581099511840513 0.07406217 0.11939824 prediction 0.47643780418123 Functional Loss - ADAM7 ENSG00000069206 CDS Human protein_coding chr8:24323242 chr8:24323244 synonymous SNV . 0 23 hm5C_associated_SNPs_70200 0 0 0 0 2 ADAM7 chr8:24323212 3'AG 24323212 Downstream 33bp
chr8 24323244 24323244 1 + C T rs34017992 24323242 + 24323222 24323262 41 TTTACCAAGGATCCATAGTACACGAATATGATTCAGCTGCC TTTACCAAGGATCCATAGTACATGAATATGATTCAGCTGCC < 41bp 0.819318413931128 0.581099511840513 0.07406217 0.11939824 prediction 0.47643780418123 Functional Loss - ADAM7 ENSG00000069206 CDS Human protein_coding chr8:24323242 chr8:24323244 synonymous SNV . 0 23 hm5C_associated_SNPs_70200 0 0 0 0 2 ADAM7 chr8:24323288 5'GT 24323288 Upstream 45bp
chr2 119752005 119752005 1 + C T BLCA 119752003 + 119751983 119752023 41 GATAATGTTCAGTGTCGGGGCACGGAGAGTACCCTGTGGAG GATAATGTTCAGTGTCGGGGCATGGAGAGTACCCTGTGGAG < 41bp 0.763103361163849 0.524886931445874 0.6150616 0.6518611 prediction 0.476432859435951 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119752003 chr2:119752005 nonsynonymous SNV 0.002 3 23 hm5C_associated_SNPs_70202 0 0 0 0 1 MARCO chr2:119751963 3'AG 119751963 Downstream 43bp
chr9 99227685 99227685 1 + C T rs34274515 99227683 + 99227663 99227703 41 GAGGCCCGAGAGGGGGTATGCGCGGCAGAGGCAGAGGTGGC GAGGCCCGAGAGGGGGTATGCGTGGCAGAGGCAGAGGTGGC < 41bp 0.823201213558224 0.584988537167875 0.8177776 0.8097473 prediction 0.476425352780698 Functional Loss - HABP4 ENSG00000130956 CDS Human protein_coding chr9:99227683 chr9:99227685 synonymous SNV . 0 23 hm5C_associated_SNPs_70203 0 0 1 0 2 HABP4 chr9:99227619 3'AG 99227619 Downstream 67bp
chr9 99227685 99227685 1 + C T rs34274515 99227683 + 99227663 99227703 41 GAGGCCCGAGAGGGGGTATGCGCGGCAGAGGCAGAGGTGGC GAGGCCCGAGAGGGGGTATGCGTGGCAGAGGCAGAGGTGGC < 41bp 0.823201213558224 0.584988537167875 0.8177776 0.8097473 prediction 0.476425352780698 Functional Loss - HABP4 ENSG00000130956 CDS Human protein_coding chr9:99227683 chr9:99227685 synonymous SNV . 0 23 hm5C_associated_SNPs_70203 0 0 1 0 2 HABP4 chr9:99227780 5'GT 99227780 Upstream 96bp
chr21 43708421 43708421 1 + C T COAD 43708419 + 43708399 43708439 41 TTCCTCAGCATCATGAGGGACTCGGTAAGGCTGCCCGCATC TTCCTCAGCATCATGAGGGACTTGGTAAGGCTGCCCGCATC < 41bp 0.738209069770656 0.457458977893664 0.3387645 0.3430161 prediction 0.476418139541312 Functional Loss - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43708419 chr21:43708421 nonsynonymous SNV 0.978 0 23 hm5C_associated_SNPs_70206 0 0 0 0 1 ABCG1 chr21:43708422 5'GT 43708422 Upstream 2bp
chr20 35506391 35506391 1 + T C rs148789954 35506390 + 35506370 35506410 41 TCCAGACCCAGCTGCTGCTCCTGAGGATCCCACGGTGCCCC TCCAGACCCAGCTGCTGCTCCCGAGGATCCCACGGTGCCCC < 41bp 0.752596152791944 0.514387881592217 0.6328962 0.9032018 prediction 0.476416542399454 Functional Loss - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35506390 chr20:35506391 synonymous SNV . 0 22 hm5C_associated_SNPs_70207 0 0 0 0 2 TLDC2 chr20:35506302 3'AG 35506302 Downstream 90bp
chr20 35506391 35506391 1 + T C rs148789954 35506390 + 35506370 35506410 41 TCCAGACCCAGCTGCTGCTCCTGAGGATCCCACGGTGCCCC TCCAGACCCAGCTGCTGCTCCCGAGGATCCCACGGTGCCCC < 41bp 0.752596152791944 0.514387881592217 0.6328962 0.9032018 prediction 0.476416542399454 Functional Loss - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35506390 chr20:35506391 synonymous SNV . 0 22 hm5C_associated_SNPs_70207 0 0 0 0 2 TLDC2 chr20:35506457 5'GT 35506457 Upstream 67bp
chr15 40655863 40655863 1 + G T UCEC 40655861 + 40655841 40655881 41 TGTGCCCCCTGAGGCAAGCCCAGAGAGAAGCTGCTCCCTCC TGTGCCCCCTGAGGCAAGCCCATAGAGAAGCTGCTCCCTCC < 41bp 0.738204406524007 0.371775519513768 0.8820561 0.16220301 prediction 0.476408813048014 Functional Loss - DISP2 ENSG00000140323 CDS Human protein_coding chr15:40655861 chr15:40655863 stopgain 1.000 0 23 hm5C_associated_SNPs_70208 0 0 0 0 1 DISP2 chr15:40655826 3'AG 40655826 Downstream 38bp
chr16 57787373 57787373 1 + C T rs34172537 57787371 + 57787351 57787391 41 ACCGGGACGAGCGCGAGTCCCGCGCGGAGATCCAGAACGCC ACCGGGACGAGCGCGAGTCCCGTGCGGAGATCCAGAACGCC < 41bp 0.787779105029576 0.549576943391233 0.3575738 0.39083043 prediction 0.476404323276687 Functional Loss - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57787371 chr16:57787373 synonymous SNV . 0 23 hm5C_associated_SNPs_70210 0 0 0 0 1 KATNB1 chr16:57787431 5'GT 57787431 Upstream 59bp
chr9 139250932 139250932 1 + G T OV 139250929 + 139250909 139250949 41 GCGAATCACCCACAGCAATGCAGGGCACCTCCGAGGCCACG GCGAATCACCCACAGCAATGCAGTGCACCTCCGAGGCCACG < 41bp 0.738201675411234 0.34644015686632 0.92447513 0.8321985 prediction 0.476403350822468 Functional Loss - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139250929 chr9:139250932 nonsynonymous SNV 0.001 4 24 hm5C_associated_SNPs_70211 0 0 0 0 1 GPSM1 chr9:139251002 5'GT 139251002 Upstream 71bp
chr19 55857947 55857947 1 + G A CESC 55857944 + 55857924 55857964 41 CCCTGGACAAGTACCAGCTGCGTGAGACCAAGCGGCGGCTG CCCTGGACAAGTACCAGCTGCGTAAGACCAAGCGGCGGCTG < 41bp 0.75013563934808 0.511940789540861 0.8139764 0.45103288 prediction 0.476389699614438 Functional Loss - KMT5C ENSG00000133247 CDS Human protein_coding chr19:55857944 chr19:55857947 nonsynonymous SNV 0.927 2 24 hm5C_associated_SNPs_70212 0 0 1 0 1 KMT5C chr19:55857868 3'AG 55857868 Downstream 80bp
chr17 5998442 5998442 1 + G A SKCM 5998439 + 5998419 5998459 41 CAGGGCGGACCGCCACCTACCGCGGATGCTTCCGACTGCCA CAGGGCGGACCGCCACCTACCGCAGATGCTTCCGACTGCCA < 41bp 0.742630322189397 0.504435619139074 0.92515266 0.48624453 prediction 0.476389406100648 Functional Loss - WSCD1 ENSG00000179314 CDS Human protein_coding chr17:5998439 chr17:5998442 nonsynonymous SNV 0.375 4 24 hm5C_associated_SNPs_70213 0 0 0 0 1 WSCD1 chr17:5998422 3'AG 5998422 Downstream 21bp
chr5 53815305 53815305 1 + C T HNSC 53815303 + 53815283 53815323 41 GACGCCATTGGCGAGCTCTTCGCGGAGCAGCCCAGGCAGGA GACGCCATTGGCGAGCTCTTCGTGGAGCAGCCCAGGCAGGA < 41bp 0.788375527318806 0.550184928554448 0.8969135 0.7817892 prediction 0.476381197528716 Functional Loss - SNX18 ENSG00000178996 CDS Human protein_coding chr5:53815303 chr5:53815305 nonsynonymous SNV 0.963 4 23 hm5C_associated_SNPs_70214 0 0 1 0 1 SNX18 chr5:53815403 5'GT 53815403 Upstream 99bp
chr6 88769216 88769216 1 + A C GBM 88769215 + 88769195 88769235 41 TCAGCAATCCTAGAAGTACGCAAGGAAAGTCACCCCTTGGC TCAGCAATCCTAGAAGTACGCCAGGAAAGTCACCCCTTGGC < 41bp 0.792393876343349 0.554204511366117 0.7925911 0.435135 prediction 0.476378729954465 Functional Loss - SPACA1 ENSG00000118434 CDS Human protein_coding chr6:88769215 chr6:88769216 nonsynonymous SNV 0.005 2 22 hm5C_associated_SNPs_70215 0 0 0 0 2 SPACA1 chr6:88769171 3'AG 88769171 Downstream 46bp
chr6 88769216 88769216 1 + A C GBM 88769215 + 88769195 88769235 41 TCAGCAATCCTAGAAGTACGCAAGGAAAGTCACCCCTTGGC TCAGCAATCCTAGAAGTACGCCAGGAAAGTCACCCCTTGGC < 41bp 0.792393876343349 0.554204511366117 0.7925911 0.435135 prediction 0.476378729954465 Functional Loss - SPACA1 ENSG00000118434 CDS Human protein_coding chr6:88769215 chr6:88769216 nonsynonymous SNV 0.005 2 22 hm5C_associated_SNPs_70215 0 0 0 0 2 SPACA1 chr6:88769306 5'GT 88769306 Upstream 91bp
chr21 42729091 42729091 1 + G A LGG 42729088 + 42729068 42729108 41 TCTGGCTGGCCTGCAGAGATCCAGATAGAAGGCTGCATACC TCTGGCTGGCCTGCAGAGATCCAAATAGAAGGCTGCATACC < 41bp 0.75405344790007 0.515868909755503 0.87127686 0.40552306 prediction 0.476369076289133 Functional Loss - FAM3B ENSG00000183844 CDS Human protein_coding chr21:42729088 chr21:42729091 synonymous SNV . 0 24 hm5C_associated_SNPs_70216 0 0 1 1 1 FAM3B chr21:42729035 3'AG 42729035 Downstream 57bp
chr14 104508499 104508499 1 + G T LUAD 104508496 + 104508476 104508516 41 CAGAGAGAGTTGCGCAGCTTCAAGACATTGCCCGTCAGAAG CAGAGAGAGTTGCGCAGCTTCAATACATTGCCCGTCAGAAG < 41bp 0.738184117940667 0.350769386987383 0.5391164 0.16069719 prediction 0.476368235881335 Functional Loss - TDRD9 ENSG00000156414 CDS Human protein_coding chr14:104508496 chr14:104508499 nonsynonymous SNV 0.038 1 24 hm5C_associated_SNPs_70217 0 0 0 0 1 TDRD9 chr14:104508406 3'AG 104508406 Downstream 94bp
chr8 59352269 59352269 1 + A C COAD 59352265 + 59352245 59352285 41 ATATGGAGGATCATCAGGATCAAGAATACATAAAACCTAGA ATATGGAGGATCATCAGGATCAAGCATACATAAAACCTAGA < 41bp 0.738181446603923 0.324039083408481 0.14449024 0.114480525 prediction 0.476362893207847 Functional Loss - UBXN2B ENSG00000215114 CDS Human protein_coding chr8:59352265 chr8:59352269 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_70218 0 0 1 0 2 UBXN2B chr8:59352192 3'AG 59352192 Downstream 78bp
chr8 59352269 59352269 1 + A C COAD 59352265 + 59352245 59352285 41 ATATGGAGGATCATCAGGATCAAGAATACATAAAACCTAGA ATATGGAGGATCATCAGGATCAAGCATACATAAAACCTAGA < 41bp 0.738181446603923 0.324039083408481 0.14449024 0.114480525 prediction 0.476362893207847 Functional Loss - UBXN2B ENSG00000215114 CDS Human protein_coding chr8:59352265 chr8:59352269 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_70218 0 0 1 0 2 UBXN2B chr8:59352329 5'GT 59352329 Upstream 61bp
chr1 84662312 84662312 1 + C T UCEC 84662310 + 84662290 84662330 41 TCTTTGCAGTGAGCCCCATGCACGGTTCTATGCAGCTCAGA TCTTTGCAGTGAGCCCCATGCATGGTTCTATGCAGCTCAGA < 41bp 0.738181434958405 0.472440853342383 0.12826878 0.1618807 prediction 0.476362869916809 Functional Loss - PRKACB ENSG00000142875 CDS Human protein_coding chr1:84662310 chr1:84662312 nonsynonymous SNV 0.937 4 23 hm5C_associated_SNPs_70219 0 0 0 0 1 PRKACB chr1:84662299 3'AG 84662299 Downstream 14bp
chr17 8159677 8159677 1 + A C rs371281535 8159676 + 8159656 8159696 41 TTGAGTCCATCATGAGCACCCAGGAATCCTCGAACCCCAAC TTGAGTCCATCATGAGCACCCCGGAATCCTCGAACCCCAAC < 41bp 0.809055063420982 0.570874742984588 0.35611832 0.09617701 prediction 0.476360640872788 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8159676 chr17:8159677 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_70221 0 0 1 0 2 PFAS chr17:8159585 3'AG 8159585 Downstream 93bp
chr17 8159677 8159677 1 + A C rs371281535 8159676 + 8159656 8159696 41 TTGAGTCCATCATGAGCACCCAGGAATCCTCGAACCCCAAC TTGAGTCCATCATGAGCACCCCGGAATCCTCGAACCCCAAC < 41bp 0.809055063420982 0.570874742984588 0.35611832 0.09617701 prediction 0.476360640872788 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8159676 chr17:8159677 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_70221 0 0 1 0 2 PFAS chr17:8159725 5'GT 8159725 Upstream 49bp
chr2 96933158 96933158 1 + G T SARC 96933156 + 96933136 96933176 41 GGTAATTACCTGGCCTCTGCCAGCTTTGATGCTACCACTTG GGTAATTACCTGGCCTCTGCCATCTTTGATGCTACCACTTG < 41bp 0.738179544139281 0.39518488086055 0.86219025 0.28150558 prediction 0.476359088278562 Functional Loss - CIAO1 ENSG00000144021 CDS Human protein_coding chr2:96933156 chr2:96933158 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_70222 0 0 1 0 2 CIAO1 chr2:96933059 3'AG 96933059 Downstream 100bp
chr2 96933158 96933158 1 + G T SARC 96933156 + 96933136 96933176 41 GGTAATTACCTGGCCTCTGCCAGCTTTGATGCTACCACTTG GGTAATTACCTGGCCTCTGCCATCTTTGATGCTACCACTTG < 41bp 0.738179544139281 0.39518488086055 0.86219025 0.28150558 prediction 0.476359088278562 Functional Loss - CIAO1 ENSG00000144021 CDS Human protein_coding chr2:96933156 chr2:96933158 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_70222 0 0 1 0 2 CIAO1 chr2:96933207 5'GT 96933207 Upstream 50bp
chr2 71357836 71357836 1 + G C OV 71357832 + 71357812 71357852 41 GGCGTCGACGGACCCTGGAGCGGTGTCTGACGGAAGTCGGC GGCGTCGACGGACCCTGGAGCGGTCTCTGACGGAAGTCGGC < 41bp 0.738176796300588 0.44651088018672 0.40417427 0.26318017 prediction 0.476353592601177 Functional Loss - MPHOSPH10 ENSG00000124383 CDS Human protein_coding chr2:71357832 chr2:71357836 nonsynonymous SNV 0.498 4 25 hm5C_associated_SNPs_70223 0 0 1 0 1 MPHOSPH10 chr2:71357884 5'GT 71357884 Upstream 49bp
chr19 1046354 1046354 1 + G A COAD 1046351 + 1046331 1046371 41 CGTGCTCAGCGGCGCCAACCCCCGGGCCGGCCTCTACCTGC CGTGCTCAGCGGCGCCAACCCCCAGGCCGGCCTCTACCTGC < 41bp 0.76528403249845 0.527108138460726 0.8268415 0.3756317 prediction 0.476351788075447 Functional Loss - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1046351 chr19:1046354 nonsynonymous SNV 0.020 1 24 hm5C_associated_SNPs_70224 0 0 1 0 1 ABCA7 chr19:1046405 5'GT 1046405 Upstream 52bp
chr3 32860416 32860416 1 + G A GBM 32860413 + 32860393 32860433 41 GCCTCGGCTTCTGCCAGCACCACGACGACGAGGTGAGTGCG GCCTCGGCTTCTGCCAGCACCACAACGACGAGGTGAGTGCG < 41bp 0.753407508982044 0.515232667837354 0.340429 0.33079123 prediction 0.476349682289378 Functional Loss - TRIM71 ENSG00000206557 CDS Human protein_coding chr3:32860413 chr3:32860416 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_70225 0 0 1 0 1 TRIM71 chr3:32860424 5'GT 32860424 Upstream 9bp
chr1 45116466 45116466 1 + G A rs374199001 45116463 + 45116443 45116483 41 TGTGAGCTATCTGCCCCAGGCAGGCCTCGCCTCCAGCAGCC TGTGAGCTATCTGCCCCAGGCAGACCTCGCCTCCAGCAGCC < 41bp 0.738170782484663 0.498313659057313 0.3937551 0.23855665 prediction 0.476341564969326 Functional Loss - RNF220 ENSG00000187147 UTR3 Human protein_coding chr1:45116463 chr1:45116466 . . 0 24 hm5C_associated_SNPs_70227 0 0 1 1 1 RNF220 chr1:45116376 3'AG 45116376 Downstream 91bp
chr16 67208748 67208748 1 + G A SKCM 67208745 + 67208725 67208765 41 AACCGGAGCCGGAGCCAGAGCCAGAGCTGGAACCCGAGGCT AACCGGAGCCGGAGCCAGAGCCAAAGCTGGAACCCGAGGCT < 41bp 0.758732034777612 0.520565827660365 0.9182273 0.90300584 prediction 0.476332414234492 Functional Loss - NOL3 ENSG00000140939 CDS Human protein_coding chr16:67208745 chr16:67208748 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_70231 0 0 0 0 1 NOL3 chr16:67208847 5'GT 67208847 Upstream 100bp
chr19 853327 853327 1 + A C LIHC 853326 + 853306 853346 41 CGCGGCGGGAGCCCACCCGGCAGGTGTTCGCCGTGCAGCGC CGCGGCGGGAGCCCACCCGGCCGGTGTTCGCCGTGCAGCGC < 41bp 0.81313017164547 0.57496542038654 0.83442855 0.4025413 prediction 0.476329502517859 Functional Loss - ELANE ENSG00000197561 CDS Human protein_coding chr19:853326 chr19:853327 nonsynonymous SNV 0.013 4 22 hm5C_associated_SNPs_70232 1 0 0 0 2 ELANE chr19:853262 3'AG 853262 Downstream 66bp
chr19 853327 853327 1 + A C LIHC 853326 + 853306 853346 41 CGCGGCGGGAGCCCACCCGGCAGGTGTTCGCCGTGCAGCGC CGCGGCGGGAGCCCACCCGGCCGGTGTTCGCCGTGCAGCGC < 41bp 0.81313017164547 0.57496542038654 0.83442855 0.4025413 prediction 0.476329502517859 Functional Loss - ELANE ENSG00000197561 CDS Human protein_coding chr19:853326 chr19:853327 nonsynonymous SNV 0.013 4 22 hm5C_associated_SNPs_70232 1 0 0 0 2 ELANE chr19:853403 5'GT 853403 Upstream 77bp
chr20 44640312 44640312 1 + C T BLCA 44640310 + 44640290 44640330 41 GCCTGCACCACGGACGGTCGCTCCGACGGCTACCGCTGGTG GCCTGCACCACGGACGGTCGCTTCGACGGCTACCGCTGGTG < 41bp 0.738164561281449 0.467590934197416 0.052563906 0.033552796 prediction 0.476329122562897 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44640310 chr20:44640312 nonsynonymous SNV 0.822 3 23 hm5C_associated_SNPs_70233 0 0 0 0 2 MMP9 chr20:44640213 3'AG 44640213 Downstream 100bp
chr20 44640312 44640312 1 + C T BLCA 44640310 + 44640290 44640330 41 GCCTGCACCACGGACGGTCGCTCCGACGGCTACCGCTGGTG GCCTGCACCACGGACGGTCGCTTCGACGGCTACCGCTGGTG < 41bp 0.738164561281449 0.467590934197416 0.052563906 0.033552796 prediction 0.476329122562897 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44640310 chr20:44640312 nonsynonymous SNV 0.822 3 23 hm5C_associated_SNPs_70233 0 0 0 0 2 MMP9 chr20:44640386 5'GT 44640386 Upstream 75bp
chr11 118502965 118502965 1 + G T PAAD 118502963 + 118502943 118502983 41 AGAAGGCAGTGGATCAGCTGCAGGAGAAGCTGGTGGCCTTG AGAAGGCAGTGGATCAGCTGCATGAGAAGCTGGTGGCCTTG < 41bp 0.738164380210318 0.406948793520955 0.89239377 0.39149168 prediction 0.476328760420636 Functional Loss - PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118502963 chr11:118502965 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_70234 0 0 1 0 2 PHLDB1 chr11:118502876 3'AG 118502876 Downstream 90bp
chr11 118502965 118502965 1 + G T PAAD 118502963 + 118502943 118502983 41 AGAAGGCAGTGGATCAGCTGCAGGAGAAGCTGGTGGCCTTG AGAAGGCAGTGGATCAGCTGCATGAGAAGCTGGTGGCCTTG < 41bp 0.738164380210318 0.406948793520955 0.89239377 0.39149168 prediction 0.476328760420636 Functional Loss - PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118502963 chr11:118502965 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_70234 0 0 1 0 2 PHLDB1 chr11:118503013 5'GT 118503013 Upstream 49bp
chr16 28943739 28943739 1 + G T COAD 28943736 + 28943716 28943756 41 CACTCAGCAGCTGACCTGGTCTCGGGAGTCCCCGCTTAAAC CACTCAGCAGCTGACCTGGTCTCTGGAGTCCCCGCTTAAAC < 41bp 0.738160756278785 0.329159754419031 0.072937936 0.051687837 prediction 0.476321512557569 Functional Loss - CD19 ENSG00000177455 CDS Human protein_coding chr16:28943736 chr16:28943739 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_70235 0 0 0 0 1 CD19 chr16:28943667 3'AG 28943667 Downstream 73bp
chr16 28943738 28943738 1 + C T SKCM 28943736 + 28943716 28943756 41 CACTCAGCAGCTGACCTGGTCTCGGGAGTCCCCGCTTAAAC CACTCAGCAGCTGACCTGGTCTTGGGAGTCCCCGCTTAAAC < 41bp 0.738160756278785 0.481278843904074 0.072937936 0.041061997 prediction 0.476321512557569 Functional Loss - CD19 ENSG00000177455 CDS Human protein_coding chr16:28943736 chr16:28943738 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_70236 0 0 0 0 1 CD19 chr16:28943667 3'AG 28943667 Downstream 72bp
chr1 29644387 29644387 1 + C T SKCM 29644385 + 29644365 29644405 41 CGCTGCCTGCCCTTCCTCATCTCCACTGATGGGGACTCCAA CGCTGCCTGCCCTTCCTCATCTTCACTGATGGGGACTCCAA < 41bp 0.738147560815705 0.441600748799643 0.9624258 0.5972718 prediction 0.47629512163141 Functional Loss - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29644385 chr1:29644387 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_70241 0 0 1 0 1 PTPRU chr1:29644433 5'GT 29644433 Upstream 47bp
chr1 43161895 43161895 1 + G T UCEC 43161893 + 43161873 43161913 41 GCCATAAAGAAGAATAACCCCAGGAAGTACCTTCGCAGTGT GCCATAAAGAAGAATAACCCCATGAAGTACCTTCGCAGTGT < 41bp 0.880239313890385 0.642094938335327 0.6416646 0.12885419 prediction 0.476288751110116 Functional Loss - YBX1 ENSG00000065978 CDS Human protein_coding chr1:43161893 chr1:43161895 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_70242 0 0 1 0 2 YBX1 chr1:43161870 3'AG 43161870 Downstream 26bp
chr1 43161895 43161895 1 + G T UCEC 43161893 + 43161873 43161913 41 GCCATAAAGAAGAATAACCCCAGGAAGTACCTTCGCAGTGT GCCATAAAGAAGAATAACCCCATGAAGTACCTTCGCAGTGT < 41bp 0.880239313890385 0.642094938335327 0.6416646 0.12885419 prediction 0.476288751110116 Functional Loss - YBX1 ENSG00000065978 CDS Human protein_coding chr1:43161893 chr1:43161895 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_70242 0 0 1 0 2 YBX1 chr1:43161959 5'GT 43161959 Upstream 65bp
chr1 212506884 212506884 1 + G T UCEC 212506881 + 212506861 212506901 41 CACTTCCTCCAAGTGATAATCCAGATTTTGATCCAGAAGAG CACTTCCTCCAAGTGATAATCCATATTTTGATCCAGAAGAG < 41bp 0.738136006503423 0.348364647384843 0.16854984 0.15431345 prediction 0.476272013006845 Functional Loss - PPP2R5A ENSG00000066027 CDS Human protein_coding chr1:212506881 chr1:212506884 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_70243 0 0 1 0 2 PPP2R5A chr1:212506839 3'AG 212506839 Downstream 46bp
chr1 212506884 212506884 1 + G T UCEC 212506881 + 212506861 212506901 41 CACTTCCTCCAAGTGATAATCCAGATTTTGATCCAGAAGAG CACTTCCTCCAAGTGATAATCCATATTTTGATCCAGAAGAG < 41bp 0.738136006503423 0.348364647384843 0.16854984 0.15431345 prediction 0.476272013006845 Functional Loss - PPP2R5A ENSG00000066027 CDS Human protein_coding chr1:212506881 chr1:212506884 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_70243 0 0 1 0 2 PPP2R5A chr1:212506940 5'GT 212506940 Upstream 57bp
chr12 10132050 10132050 1 + G T LUSC 10132047 + 10132027 10132067 41 AGTAACATGAATATCTCCAACAAGATCAGGAACCTCTCCAC AGTAACATGAATATCTCCAACAATATCAGGAACCTCTCCAC < 41bp 0.911784455474223 0.673650813832074 0.6962494 0.24983776 prediction 0.476267283284298 Functional Loss - CLEC12A ENSG00000172322 CDS Human protein_coding chr12:10132047 chr12:10132050 nonsynonymous SNV 0.200 0 24 hm5C_associated_SNPs_70244 0 0 0 0 1 CLEC12A chr12:10132123 5'GT 10132123 Upstream 74bp
chr9 116185693 116185693 1 + C T SKCM 116185691 + 116185671 116185711 41 GATGATCGTGCCTCCCCCAACCCCAGTGCAATTGTCTGAAC GATGATCGTGCCTCCCCCAACCTCAGTGCAATTGTCTGAAC < 41bp 0.73813213270893 0.451908706611237 0.08105174 0.04547873 prediction 0.47626426541786 Functional Loss - C9orf43 ENSG00000157653 CDS Human protein_coding chr9:116185691 chr9:116185693 nonsynonymous SNV 0.016 3 23 hm5C_associated_SNPs_70245 0 0 0 0 2 C9orf43 chr9:116185606 3'AG 116185606 Downstream 88bp
chr9 116185693 116185693 1 + C T SKCM 116185691 + 116185671 116185711 41 GATGATCGTGCCTCCCCCAACCCCAGTGCAATTGTCTGAAC GATGATCGTGCCTCCCCCAACCTCAGTGCAATTGTCTGAAC < 41bp 0.73813213270893 0.451908706611237 0.08105174 0.04547873 prediction 0.47626426541786 Functional Loss - C9orf43 ENSG00000157653 CDS Human protein_coding chr9:116185691 chr9:116185693 nonsynonymous SNV 0.016 3 23 hm5C_associated_SNPs_70245 0 0 0 0 2 C9orf43 chr9:116185778 5'GT 116185778 Upstream 86bp
chr12 113346549 113346549 1 + G A GBM 113346546 + 113346526 113346566 41 GGCTCCACGCTGGGGCAACCCCCGTGCGCTCAGCTTCGTAC GGCTCCACGCTGGGGCAACCCCCATGCGCTCAGCTTCGTAC < 41bp 0.778435650192214 0.54030860416317 0.06587368 0.4008784 prediction 0.476254092058088 Functional Loss - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113346546 chr12:113346549 nonsynonymous SNV 0.004 3 24 hm5C_associated_SNPs_70247 0 0 0 0 1 OAS1 chr12:113346629 5'GT 113346629 Upstream 81bp
chr2 47238519 47238519 1 + C T rs114202807 47238517 + 47238497 47238537 41 GAGTGTGTGAAGTTGCGGCCCTCGGACCCCACCGTGCCCCT GAGTGTGTGAAGTTGCGGCCCTTGGACCCCACCGTGCCCCT < 41bp 0.810123892411043 0.571998198022338 0.1469461 0.078692704 prediction 0.476251388777411 Functional Loss - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47238517 chr2:47238519 nonsynonymous SNV 0.952 1 23 hm5C_associated_SNPs_70248 0 0 1 0 2 TTC7A chr2:47238470 3'AG 47238470 Downstream 50bp
chr2 47238519 47238519 1 + C T rs114202807 47238517 + 47238497 47238537 41 GAGTGTGTGAAGTTGCGGCCCTCGGACCCCACCGTGCCCCT GAGTGTGTGAAGTTGCGGCCCTTGGACCCCACCGTGCCCCT < 41bp 0.810123892411043 0.571998198022338 0.1469461 0.078692704 prediction 0.476251388777411 Functional Loss - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47238517 chr2:47238519 nonsynonymous SNV 0.952 1 23 hm5C_associated_SNPs_70248 0 0 1 0 2 TTC7A chr2:47238574 5'GT 47238574 Upstream 56bp
chr11 12281375 12281375 1 + C T OV 12281373 + 12281353 12281393 41 ATGGCAAGAGCAGGAAGCCCCTCGGAGAGACACTCCCACCG ATGGCAAGAGCAGGAAGCCCCTTGGAGAGACACTCCCACCG < 41bp 0.793397829233274 0.555274839566174 0.48904604 0.35011965 prediction 0.4762459793342 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12281373 chr11:12281375 nonsynonymous SNV 0.412 2 23 hm5C_associated_SNPs_70251 0 0 0 0 2 MICAL2 chr11:12281342 3'AG 12281342 Downstream 34bp
chr11 12281375 12281375 1 + C T OV 12281373 + 12281353 12281393 41 ATGGCAAGAGCAGGAAGCCCCTCGGAGAGACACTCCCACCG ATGGCAAGAGCAGGAAGCCCCTTGGAGAGACACTCCCACCG < 41bp 0.793397829233274 0.555274839566174 0.48904604 0.35011965 prediction 0.4762459793342 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12281373 chr11:12281375 nonsynonymous SNV 0.412 2 23 hm5C_associated_SNPs_70251 0 0 0 0 2 MICAL2 chr11:12281444 5'GT 12281444 Upstream 70bp
chr10 102509623 102509623 1 + C T SKCM 102509621 + 102509601 102509641 41 GGTGTGCGGCCCTGTGACATCTCCCGGCAGCTGCGGGTCAG GGTGTGCGGCCCTGTGACATCTTCCGGCAGCTGCGGGTCAG < 41bp 0.738121992168847 0.461374604326673 0.1676006 0.3388673 prediction 0.476243984337694 Functional Loss - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102509621 chr10:102509623 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_70252 0 0 0 0 1 PAX2 chr10:102509671 5'GT 102509671 Upstream 49bp
chr1 10132131 10132131 1 + C T BLCA 10132129 + 10132109 10132149 41 ACTTGCTGGTGGACAGACCTCTCAGCCAACCACCCCACTCA ACTTGCTGGTGGACAGACCTCTTAGCCAACCACCCCACTCA < 41bp 0.738121273472733 0.466310538850748 0.12799913 0.10220632 prediction 0.476242546945466 Functional Loss - UBE4B ENSG00000130939 CDS Human protein_coding chr1:10132129 chr1:10132131 stopgain 0.995 1 23 hm5C_associated_SNPs_70253 0 0 1 0 1 UBE4B chr1:10132086 3'AG 10132086 Downstream 46bp
chrX 150842583 150842583 1 + C T rs150597701 150842581 + 150842561 150842601 41 GGCAAGAGTTGTCTGATTCACTCGGTCCTGTTGTCCAAGTG GGCAAGAGTTGTCTGATTCACTTGGTCCTGTTGTCCAAGTG < 41bp 0.809310044428449 0.571189625095899 0.25666803 0.24048096 prediction 0.476240838665101 Functional Loss - PASD1 ENSG00000166049 CDS Human protein_coding chrX:150842581 chrX:150842583 synonymous SNV . 0 23 hm5C_associated_SNPs_70255 0 0 0 0 1 PASD1 chrX:150842658 5'GT 150842658 Upstream 76bp
chr17 18923672 18923672 1 + G T COAD 18923669 + 18923649 18923689 41 ACACCCCAGAAACACGCCTTCTGGGCCCGTGTCTGTGGCTT ACACCCCAGAAACACGCCTTCTGTGCCCGTGTCTGTGGCTT < 41bp 0.73811857703361 0.341985728584029 0.4205916 0.15845278 prediction 0.476237154067219 Functional Loss - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18923669 chr17:18923672 nonsynonymous SNV 0.993 5 24 hm5C_associated_SNPs_70256 0 0 0 0 1 SLC5A10 chr17:18923638 3'AG 18923638 Downstream 35bp
chr19 36166891 36166891 1 + C T rs146205685 36166889 + 36166869 36166909 41 CCCTCAACGAGGAGGGCTGCCGCCTGGGGCACATGGACTAC CCCTCAACGAGGAGGGCTGCCGTCTGGGGCACATGGACTAC < 41bp 0.817795738602978 0.579684290676927 0.31159294 0.3049062 prediction 0.476222895852101 Functional Loss - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36166889 chr19:36166891 synonymous SNV . 0 23 hm5C_associated_SNPs_70258 0 0 0 0 1 UPK1A chr19:36166921 5'GT 36166921 Upstream 31bp
chr1 26570718 26570718 1 + G T COAD 26570715 + 26570695 26570735 41 GAATGGCAGACCCCAGTTATCTCGGAGCCCTTTCGGAGCCG GAATGGCAGACCCCAGTTATCTCTGAGCCCTTTCGGAGCCG < 41bp 0.921815674905992 0.683705035104168 0.83189875 0.41345155 prediction 0.476221279603648 Functional Loss - CEP85 ENSG00000130695 CDS Human protein_coding chr1:26570715 chr1:26570718 synonymous SNV . 0 24 hm5C_associated_SNPs_70259 0 0 1 0 1 CEP85 chr1:26570657 3'AG 26570657 Downstream 62bp
chr20 54974361 54974361 1 + T C rs150127192 54974360 + 54974340 54974380 41 TCTCTCAAGTGGAAAAGACTCTGTAGCTAAACTTTGGGAAA TCTCTCAAGTGGAAAAGACTCCGTAGCTAAACTTTGGGAAA < 41bp 0.756793984802473 0.518683727748412 0.10072446 0.051097095 prediction 0.476220514108121 Functional Loss - CSTF1 ENSG00000101138 CDS Human protein_coding chr20:54974360 chr20:54974361 synonymous SNV . 0 22 hm5C_associated_SNPs_70260 0 0 1 0 1 CSTF1 chr20:54974413 5'GT 54974413 Upstream 53bp
chr10 103348155 103348155 1 + A C rs3730458 103348151 + 103348131 103348171 41 CCCAGAAGACTGCGCTGCTGCAGGACGGTAACTCGAGGGTC CCCAGAAGACTGCGCTGCTGCAGGCCGGTAACTCGAGGGTC < 41bp 0.919433052983768 0.681323945593472 0.61555487 0.54161644 prediction 0.476218214780592 Functional Loss - DPCD ENSG00000166171 CDS Human protein_coding chr10:103348151 chr10:103348155 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_70261 0 0 1 0 1 DPCD chr10:103348157 5'GT 103348157 Upstream 3bp
chr1 156177734 156177734 1 + C T CESC 156177732 + 156177712 156177752 41 CACATTGTCTTTCAAGCTGTCTCGGGGCCCCTGGCTGCAGC CACATTGTCTTTCAAGCTGTCTTGGGGCCCCTGGCTGCAGC < 41bp 0.834115095769823 0.596008688427721 0.36668912 0.2670436 prediction 0.476212814684204 Functional Loss - SLC25A44 ENSG00000160785 CDS Human protein_coding chr1:156177732 chr1:156177734 nonsynonymous SNV 0.972 3 23 hm5C_associated_SNPs_70262 0 0 0 0 3 SLC25A44 chr1:156177653 3'AG 156177653 Downstream 82bp
chr1 156177734 156177734 1 + C T CESC 156177732 + 156177712 156177752 41 CACATTGTCTTTCAAGCTGTCTCGGGGCCCCTGGCTGCAGC CACATTGTCTTTCAAGCTGTCTTGGGGCCCCTGGCTGCAGC < 41bp 0.834115095769823 0.596008688427721 0.36668912 0.2670436 prediction 0.476212814684204 Functional Loss - SLC25A44 ENSG00000160785 CDS Human protein_coding chr1:156177732 chr1:156177734 nonsynonymous SNV 0.972 3 23 hm5C_associated_SNPs_70262 0 0 0 0 3 SLC25A44 chr1:156177677 3'AG 156177677 Downstream 58bp
chr1 156177734 156177734 1 + C T CESC 156177732 + 156177712 156177752 41 CACATTGTCTTTCAAGCTGTCTCGGGGCCCCTGGCTGCAGC CACATTGTCTTTCAAGCTGTCTTGGGGCCCCTGGCTGCAGC < 41bp 0.834115095769823 0.596008688427721 0.36668912 0.2670436 prediction 0.476212814684204 Functional Loss - SLC25A44 ENSG00000160785 CDS Human protein_coding chr1:156177732 chr1:156177734 nonsynonymous SNV 0.972 3 23 hm5C_associated_SNPs_70262 0 0 0 0 3 SLC25A44 chr1:156177804 5'GT 156177804 Upstream 71bp
chr2 69046427 69046427 1 + T C GBM 69046426 + 69046406 69046446 41 CACTGAAGACCTCCGAATTTCTAGGACAGACAGCTTCAGTA CACTGAAGACCTCCGAATTTCCAGGACAGACAGCTTCAGTA < 41bp 0.774531171135686 0.536428667026089 0.048242718 0.062384546 prediction 0.476205008219193 Functional Loss - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69046426 chr2:69046427 synonymous SNV . 0 22 hm5C_associated_SNPs_70263 0 0 0 0 1 ARHGAP25 chr2:69046451 5'GT 69046451 Upstream 25bp
chr16 1825652 1825652 1 + C T UCEC 1825650 + 1825630 1825670 41 GAGCTGAGTCGGCACGTGTGCGCCGTTACCAAGGCTCTCGC GAGCTGAGTCGGCACGTGTGCGTCGTTACCAAGGCTCTCGC < 41bp 0.776045863480732 0.537945706794887 0.12128219 0.088614345 prediction 0.476200313371691 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825650 chr16:1825652 nonsynonymous SNV 0.014 3 23 hm5C_associated_SNPs_70264 0 0 1 0 3 EME2 chr16:1825570 3'AG 1825570 Downstream 83bp
chr16 1825652 1825652 1 + C T UCEC 1825650 + 1825630 1825670 41 GAGCTGAGTCGGCACGTGTGCGCCGTTACCAAGGCTCTCGC GAGCTGAGTCGGCACGTGTGCGTCGTTACCAAGGCTCTCGC < 41bp 0.776045863480732 0.537945706794887 0.12128219 0.088614345 prediction 0.476200313371691 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825650 chr16:1825652 nonsynonymous SNV 0.014 3 23 hm5C_associated_SNPs_70264 0 0 1 0 3 EME2 chr16:1825685 5'GT 1825685 Upstream 34bp
chr16 1825652 1825652 1 + C T UCEC 1825650 + 1825630 1825670 41 GAGCTGAGTCGGCACGTGTGCGCCGTTACCAAGGCTCTCGC GAGCTGAGTCGGCACGTGTGCGTCGTTACCAAGGCTCTCGC < 41bp 0.776045863480732 0.537945706794887 0.12128219 0.088614345 prediction 0.476200313371691 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825650 chr16:1825652 nonsynonymous SNV 0.014 3 23 hm5C_associated_SNPs_70264 0 0 1 0 3 EME2 chr16:1825727 5'GT 1825727 Upstream 76bp
chr16 85690962 85690962 1 + G A PAAD 85690959 + 85690939 85690979 41 CCGGTGCCCACCCCACACCACACGGTGCCCAGCCTCATCTC CCGGTGCCCACCCCACACCACACAGTGCCCAGCCTCATCTC < 41bp 0.738098629836722 0.480746735143498 0.44826597 0.11185253 prediction 0.476197259673444 Functional Loss - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85690959 chr16:85690962 synonymous SNV . 0 24 hm5C_associated_SNPs_70265 0 0 0 0 1 GSE1 chr16:85690883 3'AG 85690883 Downstream 80bp
chr9 131476511 131476511 1 + G A rs73669966 131476508 + 131476488 131476528 41 TGAGGGCTTCGCAGATGAACCTCGGCATGGCGGCCTGGGGG TGAGGGCTTCGCAGATGAACCTCAGCATGGCGGCCTGGGGG < 41bp 0.766660892106536 0.528563031741383 0.5863924 0.18372682 prediction 0.476195720730305 Functional Loss - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131476508 chr9:131476511 nonsynonymous SNV 0.982 0 24 hm5C_associated_SNPs_70267 0 0 1 0 1 PKN3 chr9:131476476 3'AG 131476476 Downstream 36bp
chr10 106121897 106121897 1 + G T GBM 106121895 + 106121875 106121915 41 ACCTGACCAAACTAGTGGAGCAGGGGTCTGGACTGTCAATG ACCTGACCAAACTAGTGGAGCATGGGTCTGGACTGTCAATG < 41bp 0.738097286116478 0.395228434787564 0.8884016 0.29953653 prediction 0.476194572232955 Functional Loss - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106121895 chr10:106121897 nonsynonymous SNV 0.818 2 23 hm5C_associated_SNPs_70268 0 0 0 0 1 CFAP58 chr10:106121929 5'GT 106121929 Upstream 33bp
chr11 45241270 45241270 1 + G T UCEC 45241268 + 45241248 45241288 41 GACTACATGAAGCGCCTGCACAGCATGTCCCAGGAAACCAT GACTACATGAAGCGCCTGCACATCATGTCCCAGGAAACCAT < 41bp 0.738094446989658 0.3876309733923 0.13731837 0.14373362 prediction 0.476188893979315 Functional Loss - PRDM11 ENSG00000019485 CDS Human protein_coding chr11:45241268 chr11:45241270 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_70270 0 0 0 0 1 PRDM11 chr11:45241308 5'GT 45241308 Upstream 39bp
chr17 4433952 4433952 1 + G T LIHC 4433949 + 4433929 4433969 41 CTTCTGGCTGCTGGTCCTGTCCCGGGGGCTGGTGGGCATCG CTTCTGGCTGCTGGTCCTGTCCCTGGGGCTGGTGGGCATCG < 41bp 0.738090114582548 0.334461590616921 0.58829194 0.21144834 prediction 0.476180229165097 Functional Loss - SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4433949 chr17:4433952 nonsynonymous SNV 0.987 4 24 hm5C_associated_SNPs_70271 0 0 0 0 1 SPNS2 chr17:4433927 3'AG 4433927 Downstream 26bp
chr3 38411551 38411551 1 + T C GBM 38411550 + 38411530 38411570 41 TTTCCTTCCTTCCTCAGGTTCTGGAATGAATTTGTTGCAGA TTTCCTTCCTTCCTCAGGTTCCGGAATGAATTTGTTGCAGA < 41bp 0.749571158547429 0.511482655525472 0.2605221 0.124358535 prediction 0.476177006043914 Functional Loss - XYLB ENSG00000093217 CDS Human protein_coding chr3:38411550 chr3:38411551 synonymous SNV . 0 22 hm5C_associated_SNPs_70272 0 0 1 0 1 XYLB chr3:38411547 3'AG 38411547 Downstream 5bp
chr3 184005663 184005663 1 + G A SKCM 184005660 + 184005640 184005680 41 TGGCAGACCTGCATCTCCAACACGGATGACGCCCTTGGCTT TGGCAGACCTGCATCTCCAACACAGATGACGCCCTTGGCTT < 41bp 0.760292030670682 0.522208536712035 0.9354044 0.32966322 prediction 0.476166987917293 Functional Loss - ECE2 ENSG00000145194 CDS Human protein_coding chr3:184005660 chr3:184005663 synonymous SNV . 0 24 hm5C_associated_SNPs_70274 0 0 0 0 2 ECE2 chr3:184005625 3'AG 184005625 Downstream 39bp
chr3 184005663 184005663 1 + G A SKCM 184005660 + 184005640 184005680 41 TGGCAGACCTGCATCTCCAACACGGATGACGCCCTTGGCTT TGGCAGACCTGCATCTCCAACACAGATGACGCCCTTGGCTT < 41bp 0.760292030670682 0.522208536712035 0.9354044 0.32966322 prediction 0.476166987917293 Functional Loss - ECE2 ENSG00000145194 CDS Human protein_coding chr3:184005660 chr3:184005663 synonymous SNV . 0 24 hm5C_associated_SNPs_70274 0 0 0 0 2 ECE2 chr3:184005735 5'GT 184005735 Upstream 73bp
chr12 3121375 3121375 1 + C T SKCM 3121373 + 3121353 3121393 41 GGTGCTGGCTCGTCGCAAAGCTCGCGAGATCCAGGCCAAGC GGTGCTGGCTCGTCGCAAAGCTTGCGAGATCCAGGCCAAGC < 41bp 0.738083241621283 0.467850895469173 0.014261574 0.0072211325 prediction 0.476166483242567 Functional Loss - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3121373 chr12:3121375 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_70275 0 0 1 0 2 TEAD4 chr12:3121336 3'AG 3121336 Downstream 40bp
chr12 3121375 3121375 1 + C T SKCM 3121373 + 3121353 3121393 41 GGTGCTGGCTCGTCGCAAAGCTCGCGAGATCCAGGCCAAGC GGTGCTGGCTCGTCGCAAAGCTTGCGAGATCCAGGCCAAGC < 41bp 0.738083241621283 0.467850895469173 0.014261574 0.0072211325 prediction 0.476166483242567 Functional Loss - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3121373 chr12:3121375 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_70275 0 0 1 0 2 TEAD4 chr12:3121398 5'GT 3121398 Upstream 24bp
chr19 49632191 49632191 1 + G A LUSC 49632188 + 49632168 49632208 41 GTGAAGCGCCAGGCCCAGTCCCCGGGTGGGGTCTCCTCGGA GTGAAGCGCCAGGCCCAGTCCCCAGGTGGGGTCTCCTCGGA < 41bp 0.738080738493751 0.492444517620101 0.58969 0.3086545 prediction 0.476161476987502 Functional Loss - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49632188 chr19:49632191 synonymous SNV . 0 24 hm5C_associated_SNPs_70276 0 0 1 0 1 PPFIA3 chr19:49632269 5'GT 49632269 Upstream 79bp
chr10 18292251 18292251 1 - T A LUAD 18292255 - 18292235 18292275 41 GGATAAATATAAGAACATCCCAGCAGTGACTGTGAAGATCC GGATAAATATAAGAACATCCCAGCTGTGACTGTGAAGATCC < 41bp 0.86551566018653 0.627436408795872 0.092909366 0.1190407 prediction 0.476158502781315 Functional Loss - SLC39A12 ENSG00000148482 CDS Human antisense chr10:18292255 chr10:18292251 synonymous SNV . 0 25 hm5C_associated_SNPs_70277 0 0 0 0 1 SLC39A12-AS1 chr10:18292325 3'AG 18292325 Downstream 75bp
chr9 133355834 133355834 1 + G C BRCA 133355833 + 133355813 133355853 41 GCTTCATTGGAATGAAGTCCCGAGGTGAGTCTGCTCAGCCT GCTTCATTGGAATGAAGTCCCCAGGTGAGTCTGCTCAGCCT < 41bp 0.864183715148726 0.626104845327784 0.93272537 0.91198075 prediction 0.476157739641884 Functional Loss - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133355833 chr9:133355834 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_70278 0 0 0 0 2 ASS1 chr9:133355772 3'AG 133355772 Downstream 63bp
chr9 133355834 133355834 1 + G C BRCA 133355833 + 133355813 133355853 41 GCTTCATTGGAATGAAGTCCCGAGGTGAGTCTGCTCAGCCT GCTTCATTGGAATGAAGTCCCCAGGTGAGTCTGCTCAGCCT < 41bp 0.864183715148726 0.626104845327784 0.93272537 0.91198075 prediction 0.476157739641884 Functional Loss - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133355833 chr9:133355834 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_70278 0 0 0 0 2 ASS1 chr9:133355836 5'GT 133355836 Upstream 3bp
chr5 161569247 161569247 1 + T C LUAD 161569246 + 161569226 161569266 41 ACCATCCAGACCTATATCCCCTGCACACTCATTGTCGTCCT ACCATCCAGACCTATATCCCCCGCACACTCATTGTCGTCCT < 41bp 0.73807167503964 0.469643859705602 0.10655025 0.030889988 prediction 0.47614335007928 Functional Loss - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161569246 chr5:161569247 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_70281 0 0 0 0 2 GABRG2 chr5:161569170 3'AG 161569170 Downstream 78bp
chr5 161569247 161569247 1 + T C LUAD 161569246 + 161569226 161569266 41 ACCATCCAGACCTATATCCCCTGCACACTCATTGTCGTCCT ACCATCCAGACCTATATCCCCCGCACACTCATTGTCGTCCT < 41bp 0.73807167503964 0.469643859705602 0.10655025 0.030889988 prediction 0.47614335007928 Functional Loss - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161569246 chr5:161569247 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_70281 0 0 0 0 2 GABRG2 chr5:161569322 5'GT 161569322 Upstream 76bp
chr2 99008387 99008387 1 + G A STAD 99008384 + 99008364 99008404 41 CTGTGGCTGGTCCTGGACTACTCGGCAGATGTCCTGTATGT CTGTGGCTGGTCCTGGACTACTCAGCAGATGTCCTGTATGT < 41bp 0.762871663479057 0.524800884819045 0.25185752 0.22766998 prediction 0.476141557320025 Functional Loss - CNGA3 ENSG00000144191 CDS Human protein_coding chr2:99008384 chr2:99008387 synonymous SNV . 0 24 hm5C_associated_SNPs_70282 0 0 0 0 2 CNGA3 chr2:99008327 3'AG 99008327 Downstream 61bp
chr2 99008387 99008387 1 + G A STAD 99008384 + 99008364 99008404 41 CTGTGGCTGGTCCTGGACTACTCGGCAGATGTCCTGTATGT CTGTGGCTGGTCCTGGACTACTCAGCAGATGTCCTGTATGT < 41bp 0.762871663479057 0.524800884819045 0.25185752 0.22766998 prediction 0.476141557320025 Functional Loss - CNGA3 ENSG00000144191 CDS Human protein_coding chr2:99008384 chr2:99008387 synonymous SNV . 0 24 hm5C_associated_SNPs_70282 0 0 0 0 2 CNGA3 chr2:99008433 5'GT 99008433 Upstream 47bp
chrX 117895177 117895177 1 + G T UCEC 117895175 + 117895155 117895195 41 ATGTGCAATGGGAGAATCCACAGAATTTTATTAGCAGATGC ATGTGCAATGGGAGAATCCACATAATTTTATTAGCAGATGC < 41bp 0.738070434577842 0.406429804810381 0.18088129 0.10827571 prediction 0.476140869155683 Functional Loss - IL13RA1 ENSG00000131724 CDS Human protein_coding chrX:117895175 chrX:117895177 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_70283 0 0 1 0 2 IL13RA1 chrX:117895101 3'AG 117895101 Downstream 77bp
chrX 117895177 117895177 1 + G T UCEC 117895175 + 117895155 117895195 41 ATGTGCAATGGGAGAATCCACAGAATTTTATTAGCAGATGC ATGTGCAATGGGAGAATCCACATAATTTTATTAGCAGATGC < 41bp 0.738070434577842 0.406429804810381 0.18088129 0.10827571 prediction 0.476140869155683 Functional Loss - IL13RA1 ENSG00000131724 CDS Human protein_coding chrX:117895175 chrX:117895177 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_70283 0 0 1 0 2 IL13RA1 chrX:117895252 5'GT 117895252 Upstream 76bp
chr10 133955544 133955544 1 + G A UCEC 133955541 + 133955521 133955561 41 GAGGGACGCTGGACGCAGAGCGAGAAGTTAAGGTCTACGTG GAGGGACGCTGGACGCAGAGCGAAAAGTTAAGGTCTACGTG < 41bp 0.774846778477526 0.536785361900379 0.42525128 0.15186462 prediction 0.476122833154293 Functional Loss - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133955541 chr10:133955544 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_70284 0 0 0 0 1 JAKMIP3 chr10:133955552 5'GT 133955552 Upstream 9bp
chr3 53883706 53883706 1 + A C CESC 53883705 + 53883685 53883725 41 CATCTCCAGAGTGGATGCTACAACATGATCTAATCCCCGGA CATCTCCAGAGTGGATGCTACCACATGATCTAATCCCCGGA < 41bp 0.784631134876291 0.54657475020827 0.107929826 0.37588412 prediction 0.476112769336041 Functional Loss - IL17RB ENSG00000056736 CDS Human protein_coding chr3:53883705 chr3:53883706 nonsynonymous SNV 0.022 0 22 hm5C_associated_SNPs_70285 0 0 1 0 1 IL17RB chr3:53883682 3'AG 53883682 Downstream 25bp
chr9 132569490 132569490 1 + C T rs138707572 132569488 + 132569468 132569508 41 ACCAGTTACAGAAGTGGATCCGCGGTAATGTGAGTGCATGT ACCAGTTACAGAAGTGGATCCGTGGTAATGTGAGTGCATGT < 41bp 0.73804359289931 0.463174658324938 0.31547588 0.29775137 prediction 0.47608718579862 Functional Loss - TOR1B ENSG00000136816 CDS Human protein_coding chr9:132569488 chr9:132569490 synonymous SNV . 0 23 hm5C_associated_SNPs_70290 0 0 1 0 1 TOR1B chr9:132569467 3'AG 132569467 Downstream 24bp
chr16 46943813 46943813 1 + G T GBM 46943811 + 46943791 46943831 41 CACTGTGATCCTAAGGTGCTCTGCATAATCAACCCTGGGAA CACTGTGATCCTAAGGTGCTCTTCATAATCAACCCTGGGAA < 41bp 0.73804251676955 0.394666949890725 0.15901682 0.122811854 prediction 0.4760850335391 Functional Loss - GPT2 ENSG00000166123 CDS Human protein_coding chr16:46943811 chr16:46943813 nonsynonymous SNV 0.971 3 23 hm5C_associated_SNPs_70291 0 0 1 0 1 GPT2 chr16:46943839 5'GT 46943839 Upstream 27bp
chr1 48695050 48695050 1 + G T ESCA 48695048 + 48695028 48695068 41 TGGTCACAATGCCGCAGTATCTGAAGAAGCGATTTGGGGGC TGGTCACAATGCCGCAGTATCTTAAGAAGCGATTTGGGGGC < 41bp 0.871425523913548 0.633386698944016 0.31031078 0.20751816 prediction 0.476077649939064 Functional Loss - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48695048 chr1:48695050 synonymous SNV . 0 23 hm5C_associated_SNPs_70295 0 0 1 0 2 SLC5A9 chr1:48694967 3'AG 48694967 Downstream 84bp
chr1 48695050 48695050 1 + G T ESCA 48695048 + 48695028 48695068 41 TGGTCACAATGCCGCAGTATCTGAAGAAGCGATTTGGGGGC TGGTCACAATGCCGCAGTATCTTAAGAAGCGATTTGGGGGC < 41bp 0.871425523913548 0.633386698944016 0.31031078 0.20751816 prediction 0.476077649939064 Functional Loss - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48695048 chr1:48695050 synonymous SNV . 0 23 hm5C_associated_SNPs_70295 0 0 1 0 2 SLC5A9 chr1:48695131 5'GT 48695131 Upstream 82bp
chr2 27322381 27322381 1 + C T STAD 27322379 + 27322359 27322399 41 CGGATGCTTTCCCGCCACCCCGCGTGGTGGATACACTGGGA CGGATGCTTTCCCGCCACCCCGTGTGGTGGATACACTGGGA < 41bp 0.809190426093843 0.571157254513833 0.41721004 0.38464168 prediction 0.47606634316002 Functional Loss - KHK ENSG00000138030 CDS Human protein_coding chr2:27322379 chr2:27322381 synonymous SNV . 0 23 hm5C_associated_SNPs_70298 0 0 1 0 1 KHK chr2:27322288 3'AG 27322288 Downstream 94bp
chr11 45946196 45946196 1 + C T UCEC 45946194 + 45946174 45946214 41 GTCACCTTCGCCTCTGACATCTCGGAGCTCTGGGCCCTCTT GTCACCTTCGCCTCTGACATCTTGGAGCTCTGGGCCCTCTT < 41bp 0.807777120981547 0.5697461975251 0.9007012 0.2275716 prediction 0.476061846912893 Functional Loss - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45946194 chr11:45946196 nonsynonymous SNV 0.889 2 23 hm5C_associated_SNPs_70299 0 0 0 0 1 LARGE2 chr11:45946228 5'GT 45946228 Upstream 33bp
chrX 99852576 99852576 1 + G T UCEC 99852573 + 99852553 99852593 41 CAGAAAAGCCTATTGAAAACCGAGATTTTCTTAAAAATTCC CAGAAAAGCCTATTGAAAACCGATATTTTCTTAAAAATTCC < 41bp 0.73802750207628 0.375222383079721 0.14325008 0.13989642 prediction 0.47605500415256 Functional Loss - TNMD ENSG00000000005 CDS Human protein_coding chrX:99852573 chrX:99852576 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_70305 0 0 0 0 2 TNMD chrX:99852501 3'AG 99852501 Downstream 76bp
chrX 99852576 99852576 1 + G T UCEC 99852573 + 99852553 99852593 41 CAGAAAAGCCTATTGAAAACCGAGATTTTCTTAAAAATTCC CAGAAAAGCCTATTGAAAACCGATATTTTCTTAAAAATTCC < 41bp 0.73802750207628 0.375222383079721 0.14325008 0.13989642 prediction 0.47605500415256 Functional Loss - TNMD ENSG00000000005 CDS Human protein_coding chrX:99852573 chrX:99852576 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_70305 0 0 0 0 2 TNMD chrX:99852654 5'GT 99852654 Upstream 79bp
chr12 9840661 9840661 1 + G T UCEC 9840659 + 9840639 9840679 41 CACAAGATGCTGATCTTGCTCAGGTTGAAAGCTTCCAGGAA CACAAGATGCTGATCTTGCTCATGTTGAAAGCTTCCAGGAA < 41bp 0.738025752248373 0.409049351116438 0.87423366 0.19586968 prediction 0.476051504496747 Functional Loss - CLEC2D ENSG00000069493 CDS Human protein_coding chr12:9840659 chr12:9840661 nonsynonymous SNV 0.057 0 23 hm5C_associated_SNPs_70307 0 0 1 0 2 CLEC2D chr12:9840682 5'GT 9840682 Upstream 22bp
chr12 9840661 9840661 1 + G T UCEC 9840659 + 9840639 9840679 41 CACAAGATGCTGATCTTGCTCAGGTTGAAAGCTTCCAGGAA CACAAGATGCTGATCTTGCTCATGTTGAAAGCTTCCAGGAA < 41bp 0.738025752248373 0.409049351116438 0.87423366 0.19586968 prediction 0.476051504496747 Functional Loss - CLEC2D ENSG00000069493 CDS Human protein_coding chr12:9840659 chr12:9840661 nonsynonymous SNV 0.057 0 23 hm5C_associated_SNPs_70307 0 0 1 0 2 CLEC2D chr12:9840757 5'GT 9840757 Upstream 97bp
chr17 27371896 27371896 1 + G A LUSC 27371893 + 27371873 27371913 41 CCAGTTCTTTCTACCACACTCCCGAGGAAGCTCCCATGGAC CCAGTTCTTTCTACCACACTCCCAAGGAAGCTCCCATGGAC < 41bp 0.756240697544956 0.51821587523626 0.16442713 0.13907549 prediction 0.476049644617393 Functional Loss - PIPOX ENSG00000179761 CDS Human protein_coding chr17:27371893 chr17:27371896 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_70308 0 0 1 0 1 PIPOX chr17:27371877 3'AG 27371877 Downstream 20bp
chr1 9784991 9784991 1 + C T CESC 9784989 + 9784969 9785009 41 GCTCCAAAGACATCCAGTATCTCAAGGTATGTGCCGGGCAG GCTCCAAAGACATCCAGTATCTTAAGGTATGTGCCGGGCAG < 41bp 0.820657935004848 0.582633258732512 0.42919415 0.30280313 prediction 0.476049352544672 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9784989 chr1:9784991 synonymous SNV . 0 23 hm5C_associated_SNPs_70309 0 0 1 0 1 PIK3CD chr1:9784994 5'GT 9784994 Upstream 4bp
chr20 30681809 30681809 1 + G T STAD 30681806 + 30681786 30681826 41 GTCATTGAGGACAACGAGTACACGGCTCGGGAAGGTAGGGA GTCATTGAGGACAACGAGTACACTGCTCGGGAAGGTAGGGA < 41bp 0.738023399908352 0.339871133224287 0.19269338 0.10012859 prediction 0.476046799816704 Functional Loss - HCK ENSG00000101336 CDS Human protein_coding chr20:30681806 chr20:30681809 synonymous SNV . 0 24 hm5C_associated_SNPs_70310 0 0 0 0 1 HCK chr20:30681819 5'GT 30681819 Upstream 11bp
chr20 42089355 42089355 1 + G C HNSC 42089351 + 42089331 42089371 41 TTCCTTGTCCAGTTCCAGGTCGCGGAGCAAAGGTCGATCAC TTCCTTGTCCAGTTCCAGGTCGCGCAGCAAAGGTCGATCAC < 41bp 0.816745586906079 0.5787227759589 0.38903514 0.31536227 prediction 0.476045621894357 Functional Loss - SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089351 chr20:42089355 synonymous SNV . 0 25 hm5C_associated_SNPs_70311 0 0 1 0 1 SRSF6 chr20:42089343 3'AG 42089343 Downstream 13bp
chr9 135864570 135864570 1 + G A LUAD 135864567 + 135864547 135864587 41 GCTGTGAGCCTGGAGCAGCACACGCACGTCCACTCCCAGGT GCTGTGAGCCTGGAGCAGCACACACACGTCCACTCCCAGGT < 41bp 0.757315199340581 0.519293698686585 0.23009878 0.06252992 prediction 0.476043001307992 Functional Loss - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135864567 chr9:135864570 synonymous SNV . 0 24 hm5C_associated_SNPs_70312 0 0 1 0 1 GFI1B chr9:135864585 5'GT 135864585 Upstream 16bp
chr8 26481792 26481792 1 + G T UCEC 26481790 + 26481770 26481810 41 GTGAGTGGCATAAGGGCATCCAGGAGGAGATGGAAGCGCTT GTGAGTGGCATAAGGGCATCCATGAGGAGATGGAAGCGCTT < 41bp 0.896864514903997 0.658849580877693 0.4541794 0.124895036 prediction 0.476029868052609 Functional Loss - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26481790 chr8:26481792 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_70315 0 0 1 0 1 DPYSL2 chr8:26481823 5'GT 26481823 Upstream 32bp
chr20 35507503 35507503 1 + G A STAD 35507500 + 35507480 35507520 41 CCCTGGAGTCTGGTCTTCTGCACGTCAAGGGACGGTTTCAG CCCTGGAGTCTGGTCTTCTGCACATCAAGGGACGGTTTCAG < 41bp 0.745990482725677 0.507979548631775 0.16653034 0.07018095 prediction 0.476021868187805 Functional Loss - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35507500 chr20:35507503 synonymous SNV . 0 24 hm5C_associated_SNPs_70316 0 0 0 0 2 TLDC2 chr20:35507444 3'AG 35507444 Downstream 60bp
chr20 35507503 35507503 1 + G A STAD 35507500 + 35507480 35507520 41 CCCTGGAGTCTGGTCTTCTGCACGTCAAGGGACGGTTTCAG CCCTGGAGTCTGGTCTTCTGCACATCAAGGGACGGTTTCAG < 41bp 0.745990482725677 0.507979548631775 0.16653034 0.07018095 prediction 0.476021868187805 Functional Loss - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35507500 chr20:35507503 synonymous SNV . 0 24 hm5C_associated_SNPs_70316 0 0 0 0 2 TLDC2 chr20:35507596 5'GT 35507596 Upstream 94bp
chr22 44322986 44322986 1 + G A LUSC 44322983 + 44322963 44323003 41 CAAAATAGGCATCTCTCTTACCAGAGTGTCTGATGGGGAAA CAAAATAGGCATCTCTCTTACCAAAGTGTCTGATGGGGAAA < 41bp 0.762684232531057 0.52467508897384 0.9009073 0.36071098 prediction 0.476018287114436 Functional Loss - PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44322983 chr22:44322986 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_70318 0 0 1 0 1 PNPLA3 chr22:44323047 5'GT 44323047 Upstream 62bp
chr10 106982966 106982966 1 + G T LUAD 106982963 + 106982943 106982983 41 CAGTCGTGTGGCCCAGTCAACTGGGGACCCTTACCTATTTC CAGTCGTGTGGCCCAGTCAACTGTGGACCCTTACCTATTTC < 41bp 0.738003932789405 0.371309221620529 0.9036211 0.24397412 prediction 0.47600786557881 Functional Loss - SORCS3 ENSG00000156395 CDS Human protein_coding chr10:106982963 chr10:106982966 nonsynonymous SNV 0.973 4 24 hm5C_associated_SNPs_70320 0 0 0 0 2 SORCS3 chr10:106982874 3'AG 106982874 Downstream 93bp
chr10 106982966 106982966 1 + G T LUAD 106982963 + 106982943 106982983 41 CAGTCGTGTGGCCCAGTCAACTGGGGACCCTTACCTATTTC CAGTCGTGTGGCCCAGTCAACTGTGGACCCTTACCTATTTC < 41bp 0.738003932789405 0.371309221620529 0.9036211 0.24397412 prediction 0.47600786557881 Functional Loss - SORCS3 ENSG00000156395 CDS Human protein_coding chr10:106982963 chr10:106982966 nonsynonymous SNV 0.973 4 24 hm5C_associated_SNPs_70320 0 0 0 0 2 SORCS3 chr10:106983007 5'GT 106983007 Upstream 42bp
chr15 41576234 41576234 1 + G T rs182275641 41576231 + 41576211 41576251 41 GCGAAGATGGCGGAGTAAGGCGTGCCGCTGCAAACTGGCCT GCGAAGATGGCGGAGTAAGGCGTTCCGCTGCAAACTGGCCT < 41bp 0.737996777830875 0.374843590945536 0.46977594 0.4012461 prediction 0.475993555661749 Functional Loss - OIP5-AS1 ENSG00000247556 ncRNA_exonic Human processed_transcript chr15:41576231 chr15:41576234 . . 0 24 hm5C_associated_SNPs_70322 0 0 1 0 1 OIP5-AS1 chr15:41576308 5'GT 41576308 Upstream 75bp
chr6 117246766 117246766 1 + T C UCEC 117246765 + 117246745 117246785 41 CATCCAGTCAACCTGGAGGCCTAGGCCCTGCTCTGCACCAG CATCCAGTCAACCTGGAGGCCCAGGCCCTGCTCTGCACCAG < 41bp 0.742494149804933 0.504507932055998 0.23424754 0.24320048 prediction 0.47597243549787 Functional Loss - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117246765 chr6:117246766 nonsynonymous SNV 0.049 1 22 hm5C_associated_SNPs_70326 1 0 0 0 1 RFX6 chr6:117246822 5'GT 117246822 Upstream 57bp
chr8 17132303 17132303 1 + C T PAAD 17132301 + 17132281 17132321 41 TCAGGGTTTTCCATTTCTTCCTCCATATCCTCCACAAGAAG TCAGGGTTTTCCATTTCTTCCTTCATATCCTCCACAAGAAG < 41bp 0.737980897796112 0.434745874385001 0.96008706 0.037569255 prediction 0.475961795592224 Functional Loss - VPS37A ENSG00000155975 CDS Human protein_coding chr8:17132301 chr8:17132303 nonsynonymous SNV 0.969 0 23 hm5C_associated_SNPs_70329 0 0 1 0 1 VPS37A chr8:17132242 3'AG 17132242 Downstream 62bp
chr20 43547571 43547571 1 + A C SARC 43547567 + 43547547 43547587 41 CTTTGTGGGTCACTTCAAGTCTCGACGGGAGCGGGAGGCGG CTTTGTGGGTCACTTCAAGTCTCGCCGGGAGCGGGAGGCGG < 41bp 0.928162733406519 0.690187983381515 0.9206028 0.77332187 prediction 0.475949500050007 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43547567 chr20:43547571 synonymous SNV . 0 25 hm5C_associated_SNPs_70331 0 0 1 0 1 PABPC1L chr20:43547547 3'AG 43547547 Downstream 25bp
chr19 3746849 3746849 1 + G T CESC 3746846 + 3746826 3746866 41 CATCATTCGAGAGCAGCAGACGCGGCCCATCTGGACGGCGG CATCATTCGAGAGCAGCAGACGCTGCCCATCTGGACGGCGG < 41bp 0.737968376837691 0.337509125286445 0.6032325 0.10923645 prediction 0.475936753675382 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3746846 chr19:3746849 nonsynonymous SNV 0.841 2 24 hm5C_associated_SNPs_70335 0 0 0 0 2 TJP3 chr19:3746774 3'AG 3746774 Downstream 76bp
chr19 3746849 3746849 1 + G T CESC 3746846 + 3746826 3746866 41 CATCATTCGAGAGCAGCAGACGCGGCCCATCTGGACGGCGG CATCATTCGAGAGCAGCAGACGCTGCCCATCTGGACGGCGG < 41bp 0.737968376837691 0.337509125286445 0.6032325 0.10923645 prediction 0.475936753675382 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3746846 chr19:3746849 nonsynonymous SNV 0.841 2 24 hm5C_associated_SNPs_70335 0 0 0 0 2 TJP3 chr19:3746874 5'GT 3746874 Upstream 26bp
chr15 72105883 72105883 1 + G T PRAD 72105880 + 72105860 72105900 41 CACGCTGGCCAGCATGGAGACGCGTGTCCTGCAGGAAACTA CACGCTGGCCAGCATGGAGACGCTTGTCCTGCAGGAAACTA < 41bp 0.737967438427251 0.36884815541319 0.27089477 0.16227138 prediction 0.475934876854503 Functional Loss - NR2E3 ENSG00000031544 ncRNA_exonic Human other chr15:72105880 chr15:72105883 . 0.006 0 24 hm5C_associated_SNPs_70336 0 0 0 0 1 NR2E3 chr15:72105976 5'GT 72105976 Upstream 94bp
chr19 54387447 54387447 1 + G A COAD 54387444 + 54387424 54387464 41 TTGTGGTTCATCGACGATGCCACGAATTTGTGACCTTCGAG TTGTGGTTCATCGACGATGCCACAAATTTGTGACCTTCGAG < 41bp 0.737966129629281 0.497145202735 0.102488846 0.08961627 prediction 0.475932259258562 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54387444 chr19:54387447 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_70337 0 0 0 0 2 PRKCG chr19:54387415 3'AG 54387415 Downstream 33bp
chr19 54387447 54387447 1 + G A COAD 54387444 + 54387424 54387464 41 TTGTGGTTCATCGACGATGCCACGAATTTGTGACCTTCGAG TTGTGGTTCATCGACGATGCCACAAATTTGTGACCTTCGAG < 41bp 0.737966129629281 0.497145202735 0.102488846 0.08961627 prediction 0.475932259258562 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54387444 chr19:54387447 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_70337 0 0 0 0 2 PRKCG chr19:54387497 5'GT 54387497 Upstream 51bp
chr11 2799265 2799265 1 + A C SKCM 2799264 + 2799244 2799284 41 CGCCTGAACCGAGTAGAAGACAAGGTAGGCTCACGCGCCGG CGCCTGAACCGAGTAGAAGACCAGGTAGGCTCACGCGCCGG < 41bp 0.773191702745934 0.535233304335086 0.87367094 0.85727406 prediction 0.475916796821695 Functional Loss - KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2799264 chr11:2799265 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_70338 0 0 0 0 1 KCNQ1 chr11:2799206 3'AG 2799206 Downstream 60bp
chr9 27212869 27212869 1 + G A UCEC 27212866 + 27212846 27212886 41 ACTTCGCTGCCGACGTGGCCCGGGGCATGGACTACTTGAGC ACTTCGCTGCCGACGTGGCCCGGAGCATGGACTACTTGAGC < 41bp 0.737954282428383 0.499899751640173 0.9027246 0.8636584 prediction 0.475908564856766 Functional Loss - TEK ENSG00000120156 CDS Human protein_coding chr9:27212866 chr9:27212869 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_70340 0 0 0 0 1 TEK chr9:27212895 5'GT 27212895 Upstream 27bp
chr6 35280459 35280459 1 + G T SARC 35280457 + 35280437 35280477 41 ACTGGGCCGAACGCTGGTTCCAGCTGCAGCCCAGCTGCCTC ACTGGGCCGAACGCTGGTTCCATCTGCAGCCCAGCTGCCTC < 41bp 0.737949773776095 0.377884458310158 0.53929716 0.057341576 prediction 0.47589954755219 Functional Loss - DEF6 ENSG00000023892 CDS Human protein_coding chr6:35280457 chr6:35280459 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_70342 0 0 0 0 2 DEF6 chr6:35280403 3'AG 35280403 Downstream 57bp
chr6 35280459 35280459 1 + G T SARC 35280457 + 35280437 35280477 41 ACTGGGCCGAACGCTGGTTCCAGCTGCAGCCCAGCTGCCTC ACTGGGCCGAACGCTGGTTCCATCTGCAGCCCAGCTGCCTC < 41bp 0.737949773776095 0.377884458310158 0.53929716 0.057341576 prediction 0.47589954755219 Functional Loss - DEF6 ENSG00000023892 CDS Human protein_coding chr6:35280457 chr6:35280459 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_70342 0 0 0 0 2 DEF6 chr6:35280549 5'GT 35280549 Upstream 91bp
chr15 67358666 67358666 1 + G T GBM 67358664 + 67358644 67358684 41 TGGAGAAGGCCATCACCACGCAGAACGTCAACACCAAGTGC TGGAGAAGGCCATCACCACGCATAACGTCAACACCAAGTGC < 41bp 0.737944442243994 0.391280345370554 0.14752802 0.10472971 prediction 0.475888884487988 Functional Loss - SMAD3 ENSG00000166949 CDS Human protein_coding chr15:67358664 chr15:67358666 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_70343 0 0 0 0 1 SMAD3 chr15:67358698 5'GT 67358698 Upstream 33bp
chr8 43152602 43152602 1 + G T LUSC 43152599 + 43152579 43152619 41 GCTGACATTGAATCAAAAAACAAGGTACAGATCTACCAATT GCTGACATTGAATCAAAAAACAATGTACAGATCTACCAATT < 41bp 0.737929164323705 0.392718634289872 0.8244399 0.2711 prediction 0.475858328647411 Functional Loss - POTEA ENSG00000188877 ncRNA_exonic Human polymorphic_pseudogene chr8:43152599 chr8:43152602 . . 0 24 hm5C_associated_SNPs_70347 0 0 0 0 1 POTEA chr8:43152602 5'GT 43152602 Upstream 1bp
chr7 34867184 34867184 1 + T C CESC 34867183 + 34867163 34867203 41 ACATGACCATCGTGGCCTTCCTGGTGTACTTCATCCCTCTG ACATGACCATCGTGGCCTTCCCGGTGTACTTCATCCCTCTG < 41bp 0.743188190294735 0.505260383576102 0.3734419 0.38214257 prediction 0.475855613437266 Functional Loss - NPSR1 ENSG00000187258 CDS Human protein_coding chr7:34867183 chr7:34867184 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_70348 0 0 0 0 1 NPSR1 chr7:34867214 5'GT 34867214 Upstream 31bp
chr17 42153069 42153069 1 + G A rs529935686 42153066 + 42153046 42153086 41 AGGTCCATCAGCCTAGCCTTCAAGTGGTGTGAGCGGCCTGA AGGTCCATCAGCCTAGCCTTCAAATGGTGTGAGCGGCCTGA < 41bp 0.748193196258692 0.51027411487607 0.812011 0.7849317 prediction 0.475838162765245 Functional Loss - G6PC3 ENSG00000141349 CDS Human protein_coding chr17:42153066 chr17:42153069 synonymous SNV . 0 24 hm5C_associated_SNPs_70351 0 0 1 0 1 G6PC3 chr17:42153048 3'AG 42153048 Downstream 22bp
chr4 15437551 15437551 1 + G T UCEC 15437549 + 15437529 15437569 41 CCATGGTCGCATCGGCCTTCCAGGAAGAGATGGTAGAGACG CCATGGTCGCATCGGCCTTCCATGAAGAGATGGTAGAGACG < 41bp 0.89508855118461 0.657179606073119 0.32377523 0.30684912 prediction 0.475817890222983 Functional Loss - C1QTNF7 ENSG00000163145 CDS Human protein_coding chr4:15437549 chr4:15437551 stopgain 0.998 1 23 hm5C_associated_SNPs_70354 0 0 0 0 1 C1QTNF7 chr4:15437605 5'GT 15437605 Upstream 55bp
chr17 33457379 33457379 1 + C T COAD 33457377 + 33457357 33457397 41 CACCGTGCGGCGCAAGGAACCCCGGCAAAAGATCGTGTCCA CACCGTGCGGCGCAAGGAACCCTGGCAAAAGATCGTGTCCA < 41bp 0.774299845485341 0.536392536855994 0.27234346 0.057029843 prediction 0.475814617258695 Functional Loss - FNDC8 ENSG00000073598 CDS Human protein_coding chr17:33457377 chr17:33457379 nonsynonymous SNV 0.755 1 23 hm5C_associated_SNPs_70356 0 0 0 0 1 FNDC8 chr17:33457301 3'AG 33457301 Downstream 79bp
chr1 15783656 15783656 1 + G T UCEC 15783654 + 15783634 15783674 41 GGTGAAGAAGCGAGGCCCAACAGCTGGCCCTGGCAGGTGAG GGTGAAGAAGCGAGGCCCAACATCTGGCCCTGGCAGGTGAG < 41bp 0.737884640069703 0.383049776442165 0.26264244 0.05495894 prediction 0.475769280139406 Functional Loss - CELA2A ENSG00000142615 CDS Human protein_coding chr1:15783654 chr1:15783656 nonsynonymous SNV 0.852 4 23 hm5C_associated_SNPs_70367 0 0 0 0 2 CELA2A chr1:15783581 3'AG 15783581 Downstream 76bp
chr1 15783656 15783656 1 + G T UCEC 15783654 + 15783634 15783674 41 GGTGAAGAAGCGAGGCCCAACAGCTGGCCCTGGCAGGTGAG GGTGAAGAAGCGAGGCCCAACATCTGGCCCTGGCAGGTGAG < 41bp 0.737884640069703 0.383049776442165 0.26264244 0.05495894 prediction 0.475769280139406 Functional Loss - CELA2A ENSG00000142615 CDS Human protein_coding chr1:15783654 chr1:15783656 nonsynonymous SNV 0.852 4 23 hm5C_associated_SNPs_70367 0 0 0 0 2 CELA2A chr1:15783669 5'GT 15783669 Upstream 14bp
chr10 99186109 99186109 1 + A C LUSC 99186108 + 99186088 99186128 41 GATCCGGCACGGCGAGAGCGCATGGAACCTGGAGAACCGCT GATCCGGCACGGCGAGAGCGCCTGGAACCTGGAGAACCGCT < 41bp 0.737884036571609 0.490774587078163 0.46840647 0.4366319 prediction 0.475768073143218 Functional Loss - PGAM1 ENSG00000171314 CDS Human protein_coding chr10:99186108 chr10:99186109 synonymous SNV . 0 22 hm5C_associated_SNPs_70368 0 0 0 0 1 PGAM1 chr10:99186203 5'GT 99186203 Upstream 95bp
chr7 31092197 31092197 1 + G T rs529768756 31092194 + 31092174 31092214 41 GGCGCGCGCTCCTCGGCGCACACGCTCCCCATCCCCGCGCC GGCGCGCGCTCCTCGGCGCACACTCTCCCCATCCCCGCGCC < 41bp 0.737883127149068 0.370533488711877 0.118522435 0.13295111 prediction 0.475766254298135 Functional Loss - ADCYAP1R1 ENSG00000078549 UTR5 Human protein_coding chr7:31092194 chr7:31092197 . . 0 24 hm5C_associated_SNPs_70369 0 0 0 0 1 ADCYAP1R1 chr7:31092293 5'GT 31092293 Upstream 97bp
chr16 67006837 67006837 1 + G T OV 67006834 + 67006814 67006854 41 TCTGGAGATCAACCCAGTGCCACGGGCCGGACAGAAGTTCA TCTGGAGATCAACCCAGTGCCACTGGCCGGACAGAAGTTCA < 41bp 0.737880013333025 0.341507272475949 0.2189847 0.122053444 prediction 0.47576002666605 Functional Loss - CES3 ENSG00000172828 CDS Human protein_coding chr16:67006834 chr16:67006837 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_70371 0 0 0 0 1 CES3 chr16:67006757 3'AG 67006757 Downstream 81bp
chr1 183177102 183177102 1 + T C UCEC 183177101 + 183177081 183177121 41 AATGGATTCCGCTGCCTCAACTGCAATGACAACACTGATGG AATGGATTCCGCTGCCTCAACCGCAATGACAACACTGATGG < 41bp 0.811561025876102 0.573685699640458 0.32243708 0.25317466 prediction 0.475750652471287 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183177101 chr1:183177102 nonsynonymous SNV 0.856 5 22 hm5C_associated_SNPs_70372 0 0 0 0 1 LAMC2 chr1:183177016 3'AG 183177016 Downstream 87bp
chr1 85592260 85592260 1 + C T UCEC 85592258 + 85592238 85592278 41 CTCAGGCCACTGGTCCCTGACTCGGCCCGGAGTTTTCTACA CTCAGGCCACTGGTCCCTGACTTGGCCCGGAGTTTTCTACA < 41bp 0.737868987668522 0.43964865650168 0.13972223 0.060296386 prediction 0.475737975337044 Functional Loss - WDR63 ENSG00000162643 CDS Human protein_coding chr1:85592258 chr1:85592260 nonsynonymous SNV 0.979 4 23 hm5C_associated_SNPs_70373 0 0 0 0 1 WDR63 chr1:85592194 3'AG 85592194 Downstream 67bp
chr3 9956940 9956940 1 + G A LUAD 9956937 + 9956917 9956957 41 GTTGCTTCCCGCCACCAGGCCCGGGCCCAGCGCGGCCAGTG GTTGCTTCCCGCCACCAGGCCCGAGCCCAGCGCGGCCAGTG < 41bp 0.751806505106801 0.513940813448907 0.42336732 0.1333929 prediction 0.475731383315787 Functional Loss - IL17RE ENSG00000163701 CDS Human protein_coding chr3:9956937 chr3:9956940 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_70377 0 0 1 0 1 IL17RE chr3:9956935 3'AG 9956935 Downstream 6bp
chr3 1262405 1262405 1 + G T UCEC 1262403 + 1262383 1262423 41 TAAGCCGTCCTATTTTTACTCAGGAGCCACATGATGTCATT TAAGCCGTCCTATTTTTACTCATGAGCCACATGATGTCATT < 41bp 0.737865586231977 0.396422070237507 0.8990712 0.29507032 prediction 0.475731172463954 Functional Loss - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1262403 chr3:1262405 nonsynonymous SNV 0.474 1 23 hm5C_associated_SNPs_70378 0 0 0 0 2 CNTN6 chr3:1262371 3'AG 1262371 Downstream 35bp
chr3 1262405 1262405 1 + G T UCEC 1262403 + 1262383 1262423 41 TAAGCCGTCCTATTTTTACTCAGGAGCCACATGATGTCATT TAAGCCGTCCTATTTTTACTCATGAGCCACATGATGTCATT < 41bp 0.737865586231977 0.396422070237507 0.8990712 0.29507032 prediction 0.475731172463954 Functional Loss - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1262403 chr3:1262405 nonsynonymous SNV 0.474 1 23 hm5C_associated_SNPs_70378 0 0 0 0 2 CNTN6 chr3:1262497 5'GT 1262497 Upstream 93bp
chr10 129868615 129868615 1 + G A SKCM 129868612 + 129868592 129868632 41 TTACTCGAGTACTACCTCTACGGGGACACAGAGCTGGACGT TTACTCGAGTACTACCTCTACGGAGACACAGAGCTGGACGT < 41bp 0.751595598651939 0.513730796004364 0.36699975 0.22543266 prediction 0.475729605295151 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129868612 chr10:129868615 synonymous SNV . 0 24 hm5C_associated_SNPs_70379 0 0 0 0 1 PTPRE chr10:129868565 3'AG 129868565 Downstream 51bp
chr5 170863159 170863159 1 + G C LUAD 170863155 + 170863135 170863175 41 CGTGGAGAACCAGACGCGGGCTCGGGACGATGTGAGCCGTA CGTGGAGAACCAGACGCGGGCTCGCGACGATGTGAGCCGTA < 41bp 0.819402311226744 0.581542485541999 0.3443612 0.27717912 prediction 0.47571965136949 Functional Loss - FGF18 ENSG00000156427 CDS Human protein_coding chr5:170863155 chr5:170863159 synonymous SNV . 0 25 hm5C_associated_SNPs_70381 0 0 1 0 1 FGF18 chr5:170863097 3'AG 170863097 Downstream 63bp
chr9 2056842 2056842 1 + C T SKCM 2056840 + 2056820 2056860 41 AGAGGAAACGCCGTCAGAAACACCAGGTTCTTAGACCCTGG AGAGGAAACGCCGTCAGAAACATCAGGTTCTTAGACCCTGG < 41bp 0.825289414079319 0.587440069947344 0.35751748 0.3027567 prediction 0.475698688263951 Functional Loss - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2056840 chr9:2056842 synonymous SNV . 0 23 hm5C_associated_SNPs_70384 0 0 1 0 1 SMARCA2 chr9:2056845 5'GT 2056845 Upstream 4bp
chr10 105200312 105200312 1 + G T STAD 105200309 + 105200289 105200329 41 AGGCGCAGAAGCGGGGCGGGCGGGAGTGCCGGGAGTCTGGG AGGCGCAGAAGCGGGGCGGGCGGTAGTGCCGGGAGTCTGGG < 41bp 0.920638683304541 0.682793126798147 0.90957594 0.89468336 prediction 0.475691113012787 Functional Loss - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105200309 chr10:105200312 stopgain 0.000 0 24 hm5C_associated_SNPs_70385 0 0 1 0 1 PDCD11 chr10:105200338 5'GT 105200338 Upstream 27bp
chr11 63997004 63997004 1 + G T UCEC 63997001 + 63996981 63997021 41 CACTACCTGAGTGGGGGACCCGAGGCCCACGAGTCTACAGG CACTACCTGAGTGGGGGACCCGATGCCCACGAGTCTACAGG < 41bp 0.737845482996515 0.332827277793243 0.89318824 0.20466092 prediction 0.475690965993031 Functional Loss - NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997001 chr11:63997004 nonsynonymous SNV 0.978 2 24 hm5C_associated_SNPs_70386 0 0 0 0 2 NUDT22 chr11:63996950 3'AG 63996950 Downstream 55bp
chr11 63997004 63997004 1 + G T UCEC 63997001 + 63996981 63997021 41 CACTACCTGAGTGGGGGACCCGAGGCCCACGAGTCTACAGG CACTACCTGAGTGGGGGACCCGATGCCCACGAGTCTACAGG < 41bp 0.737845482996515 0.332827277793243 0.89318824 0.20466092 prediction 0.475690965993031 Functional Loss - NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997001 chr11:63997004 nonsynonymous SNV 0.978 2 24 hm5C_associated_SNPs_70386 0 0 0 0 2 NUDT22 chr11:63997043 5'GT 63997043 Upstream 40bp
chr5 901542 901542 1 + C T UCEC 901540 + 901520 901560 41 CCTGGAACCGGGTGGTGCTGCTCCACGGTAAATTATGCAGG CCTGGAACCGGGTGGTGCTGCTTCACGGTAAATTATGCAGG < 41bp 0.737843655278902 0.438671975765769 0.91353583 0.2450465 prediction 0.475687310557804 Functional Loss - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:901540 chr5:901542 synonymous SNV . 0 23 hm5C_associated_SNPs_70389 0 0 1 0 2 TRIP13 chr5:901456 3'AG 901456 Downstream 87bp
chr5 901542 901542 1 + C T UCEC 901540 + 901520 901560 41 CCTGGAACCGGGTGGTGCTGCTCCACGGTAAATTATGCAGG CCTGGAACCGGGTGGTGCTGCTTCACGGTAAATTATGCAGG < 41bp 0.737843655278902 0.438671975765769 0.91353583 0.2450465 prediction 0.475687310557804 Functional Loss - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:901540 chr5:901542 synonymous SNV . 0 23 hm5C_associated_SNPs_70389 0 0 1 0 2 TRIP13 chr5:901546 5'GT 901546 Upstream 5bp
chr14 23070604 23070604 1 + C T GBM 23070602 + 23070582 23070622 41 TGGCTGAGTAGCTGGCTGCCCACGTGGCGCCCCACTTCCAT TGGCTGAGTAGCTGGCTGCCCATGTGGCGCCCCACTTCCAT < 41bp 0.798581169505957 0.560740587430965 0.15114343 0.13640097 prediction 0.475681164149984 Functional Loss - ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23070602 chr14:23070604 nonsynonymous SNV 0.884 2 23 hm5C_associated_SNPs_70390 0 0 1 0 1 ABHD4 chr14:23070572 3'AG 23070572 Downstream 33bp
chr1 156702804 156702804 1 + G T MESO 156702802 + 156702782 156702822 41 GAAGAAGCTGAGTGATTTCACAGGCTGCACCCAGGTTGTAG GAAGAAGCTGAGTGATTTCACATGCTGCACCCAGGTTGTAG < 41bp 0.737839073895732 0.383266042386002 0.8145391 0.17780095 prediction 0.475678147791464 Functional Loss - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156702802 chr1:156702804 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_70392 0 0 1 0 2 RRNAD1 chr1:156702777 3'AG 156702777 Downstream 28bp
chr1 156702804 156702804 1 + G T MESO 156702802 + 156702782 156702822 41 GAAGAAGCTGAGTGATTTCACAGGCTGCACCCAGGTTGTAG GAAGAAGCTGAGTGATTTCACATGCTGCACCCAGGTTGTAG < 41bp 0.737839073895732 0.383266042386002 0.8145391 0.17780095 prediction 0.475678147791464 Functional Loss - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156702802 chr1:156702804 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_70392 0 0 1 0 2 RRNAD1 chr1:156702839 5'GT 156702839 Upstream 36bp
chr16 70500122 70500122 1 + T C UCEC 70500121 + 70500101 70500141 41 GCCCCCGTGGAAGCCTTGGTCTGCAACCTGGACTGCCTGCT GCCCCCGTGGAAGCCTTGGTCCGCAACCTGGACTGCCTGCT < 41bp 0.783944880002611 0.546106681465394 0.57235235 0.6931751 prediction 0.475676397074434 Functional Loss - FUK ENSG00000157353 CDS Human protein_coding chr16:70500121 chr16:70500122 nonsynonymous SNV 0.986 4 22 hm5C_associated_SNPs_70393 0 0 1 0 1 FUK chr16:70500160 5'GT 70500160 Upstream 39bp
chrX 155233490 155233490 1 + G A LUSC 155233487 + 155233467 155233507 41 CTGGGAGGGAGCAGGTCAGCCTGGTGGACCCGGAGTACCTG CTGGGAGGGAGCAGGTCAGCCTGATGGACCCGGAGTACCTG < 41bp 0.737827440232808 0.496210149506174 0.8758236 0.73241484 prediction 0.475654880465615 Functional Loss - IL9R ENSG00000124334 CDS Human protein_coding chrX:155233487 chrX:155233490 stopgain 0.859 2 24 hm5C_associated_SNPs_70396 0 0 0 0 1 IL9R chrX:155233520 5'GT 155233520 Upstream 31bp
chr14 60977887 60977887 1 + A C rs530622461 60977883 + 60977863 60977903 41 ACGCCAGAGGTGCTGGGCGTCGCCACCAGCCCGGCCGCCAG ACGCCAGAGGTGCTGGGCGTCGCCCCCAGCCCGGCCGCCAG < 41bp 0.924387491130676 0.686566865283685 0.57519054 0.16176113 prediction 0.475641251693981 Functional Loss - SIX6 ENSG00000184302 CDS Human protein_coding chr14:60977883 chr14:60977887 nonsynonymous SNV 0.898 1 25 hm5C_associated_SNPs_70398 0 0 0 0 1 SIX6 chr14:60977802 3'AG 60977802 Downstream 86bp
chr19 54386432 54386432 1 + G T LUSC 54386430 + 54386410 54386450 41 CTTCCAGGGGTATCGGAAAGCAGGGCCTGCAATGTCAAGGT CTTCCAGGGGTATCGGAAAGCATGGCCTGCAATGTCAAGGT < 41bp 0.905688591665123 0.667868502862731 0.8887024 0.4379856 prediction 0.475640177604786 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54386430 chr19:54386432 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_70399 0 0 0 0 2 PRKCG chr19:54386417 3'AG 54386417 Downstream 16bp
chr19 54386432 54386432 1 + G T LUSC 54386430 + 54386410 54386450 41 CTTCCAGGGGTATCGGAAAGCAGGGCCTGCAATGTCAAGGT CTTCCAGGGGTATCGGAAAGCATGGCCTGCAATGTCAAGGT < 41bp 0.905688591665123 0.667868502862731 0.8887024 0.4379856 prediction 0.475640177604786 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54386430 chr19:54386432 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_70399 0 0 0 0 2 PRKCG chr19:54386448 5'GT 54386448 Upstream 17bp
chr17 9596507 9596507 1 + C T SKCM 9596505 + 9596485 9596525 41 TGTGGCCTGCAGCTATTTGTCTCCGAAGGACAGTCGGCCCC TGTGGCCTGCAGCTATTTGTCTTCGAAGGACAGTCGGCCCC < 41bp 0.847314556444408 0.609494921693041 0.37800336 0.14225581 prediction 0.475639269502734 Functional Loss - USP43 ENSG00000154914 CDS Human protein_coding chr17:9596505 chr17:9596507 nonsynonymous SNV 0.046 2 23 hm5C_associated_SNPs_70400 0 0 0 0 2 USP43 chr17:9596444 3'AG 9596444 Downstream 64bp
chr17 9596507 9596507 1 + C T SKCM 9596505 + 9596485 9596525 41 TGTGGCCTGCAGCTATTTGTCTCCGAAGGACAGTCGGCCCC TGTGGCCTGCAGCTATTTGTCTTCGAAGGACAGTCGGCCCC < 41bp 0.847314556444408 0.609494921693041 0.37800336 0.14225581 prediction 0.475639269502734 Functional Loss - USP43 ENSG00000154914 CDS Human protein_coding chr17:9596505 chr17:9596507 nonsynonymous SNV 0.046 2 23 hm5C_associated_SNPs_70400 0 0 0 0 2 USP43 chr17:9596547 5'GT 9596547 Upstream 41bp
chr8 20074767 20074767 1 + C T UCEC 20074765 + 20074745 20074785 41 CAATGTGCTGCCCTCACTATCACGGTTAATGAAGTCTGCTA CAATGTGCTGCCCTCACTATCATGGTTAATGAAGTCTGCTA < 41bp 0.818771695278164 0.580952354424496 0.9041303 0.9289187 prediction 0.475638681707336 Functional Loss - ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20074765 chr8:20074767 nonsynonymous SNV 0.867 5 23 hm5C_associated_SNPs_70401 0 0 1 0 2 ATP6V1B2 chr8:20074731 3'AG 20074731 Downstream 37bp
chr8 20074767 20074767 1 + C T UCEC 20074765 + 20074745 20074785 41 CAATGTGCTGCCCTCACTATCACGGTTAATGAAGTCTGCTA CAATGTGCTGCCCTCACTATCATGGTTAATGAAGTCTGCTA < 41bp 0.818771695278164 0.580952354424496 0.9041303 0.9289187 prediction 0.475638681707336 Functional Loss - ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20074765 chr8:20074767 nonsynonymous SNV 0.867 5 23 hm5C_associated_SNPs_70401 0 0 1 0 2 ATP6V1B2 chr8:20074835 5'GT 20074835 Upstream 69bp
chr1 119958051 119958051 1 + G T HNSC 119958048 + 119958028 119958068 41 TTTGGATTGGCCACGATGGGCTGGAGCTGCCTTGTGACAGG TTTGGATTGGCCACGATGGGCTGTAGCTGCCTTGTGACAGG < 41bp 0.922146754106434 0.684341810227062 0.44883466 0.17567664 prediction 0.475609887758745 Functional Loss - HSD3B2 ENSG00000203859 CDS Human protein_coding chr1:119958048 chr1:119958051 nonsynonymous SNV 0.928 3 24 hm5C_associated_SNPs_70405 0 0 0 0 1 HSD3B2 chr1:119957954 3'AG 119957954 Downstream 98bp
chr4 110920855 110920855 1 + G T LUAD 110920853 + 110920833 110920873 41 AGCTGTGTTGTTGGCTACATCGGGGAGCGATGTCAGTACCG AGCTGTGTTGTTGGCTACATCGTGGAGCGATGTCAGTACCG < 41bp 0.89517382068507 0.657371424985183 0.925513 0.86565787 prediction 0.475604791399774 Functional Loss - EGF ENSG00000138798 CDS Human protein_coding chr4:110920853 chr4:110920855 nonsynonymous SNV 0.983 5 23 hm5C_associated_SNPs_70407 0 0 0 0 1 EGF chr4:110920835 3'AG 110920835 Downstream 21bp
chr17 48551125 48551125 1 + C T GBM 48551123 + 48551103 48551143 41 AGAACATCTACCCCGCAGAGCTCGAGGACTTCTTTCACACA AGAACATCTACCCCGCAGAGCTTGAGGACTTCTTTCACACA < 41bp 0.737802289288751 0.446922980894687 0.16169822 0.1946899 prediction 0.475604578577502 Functional Loss - ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48551123 chr17:48551125 synonymous SNV . 0 23 hm5C_associated_SNPs_70408 0 0 0 0 2 ACSF2 chr17:48551026 3'AG 48551026 Downstream 100bp
chr17 48551125 48551125 1 + C T GBM 48551123 + 48551103 48551143 41 AGAACATCTACCCCGCAGAGCTCGAGGACTTCTTTCACACA AGAACATCTACCCCGCAGAGCTTGAGGACTTCTTTCACACA < 41bp 0.737802289288751 0.446922980894687 0.16169822 0.1946899 prediction 0.475604578577502 Functional Loss - ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48551123 chr17:48551125 synonymous SNV . 0 23 hm5C_associated_SNPs_70408 0 0 0 0 2 ACSF2 chr17:48551167 5'GT 48551167 Upstream 43bp
chr17 48551126 48551126 1 + G A UCEC 48551123 + 48551103 48551143 41 AGAACATCTACCCCGCAGAGCTCGAGGACTTCTTTCACACA AGAACATCTACCCCGCAGAGCTCAAGGACTTCTTTCACACA < 41bp 0.737802289288751 0.497913215607226 0.16169822 0.117762566 prediction 0.475604578577502 Functional Loss - ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48551123 chr17:48551126 nonsynonymous SNV 0.926 4 24 hm5C_associated_SNPs_70409 0 0 0 0 1 ACSF2 chr17:48551167 5'GT 48551167 Upstream 42bp
chr20 36992685 36992685 1 + C T BLCA 36992683 + 36992663 36992703 41 TTATAGCTTAGTGGAAGCCCCTCGGGCAACAGCCCAGATGC TTATAGCTTAGTGGAAGCCCCTTGGGCAACAGCCCAGATGC < 41bp 0.815599423602432 0.577798416706717 0.3717088 0.31148845 prediction 0.47560201379143 Functional Loss - LBP ENSG00000129988 CDS Human protein_coding chr20:36992683 chr20:36992685 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_70410 0 0 0 0 2 LBP chr20:36992629 3'AG 36992629 Downstream 57bp
chr20 36992685 36992685 1 + C T BLCA 36992683 + 36992663 36992703 41 TTATAGCTTAGTGGAAGCCCCTCGGGCAACAGCCCAGATGC TTATAGCTTAGTGGAAGCCCCTTGGGCAACAGCCCAGATGC < 41bp 0.815599423602432 0.577798416706717 0.3717088 0.31148845 prediction 0.47560201379143 Functional Loss - LBP ENSG00000129988 CDS Human protein_coding chr20:36992683 chr20:36992685 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_70410 0 0 0 0 2 LBP chr20:36992720 5'GT 36992720 Upstream 36bp
chr2 234367008 234367008 1 + C T SKCM 234367006 + 234366986 234367026 41 CAGCATGCAGATGGCCGTCTCTCGAGTCATCAGGCTACAGC CAGCATGCAGATGGCCGTCTCTTGAGTCATCAGGCTACAGC < 41bp 0.841378278071311 0.603577988488187 0.7332685 0.09512094 prediction 0.475600579166248 Functional Loss - DGKD ENSG00000077044 CDS Human protein_coding chr2:234367006 chr2:234367008 stopgain 0.964 1 23 hm5C_associated_SNPs_70411 0 0 1 0 2 DGKD chr2:234366930 3'AG 234366930 Downstream 79bp
chr2 234367008 234367008 1 + C T SKCM 234367006 + 234366986 234367026 41 CAGCATGCAGATGGCCGTCTCTCGAGTCATCAGGCTACAGC CAGCATGCAGATGGCCGTCTCTTGAGTCATCAGGCTACAGC < 41bp 0.841378278071311 0.603577988488187 0.7332685 0.09512094 prediction 0.475600579166248 Functional Loss - DGKD ENSG00000077044 CDS Human protein_coding chr2:234367006 chr2:234367008 stopgain 0.964 1 23 hm5C_associated_SNPs_70411 0 0 1 0 2 DGKD chr2:234367043 5'GT 234367043 Upstream 36bp
chr2 27375614 27375614 1 + C T SKCM 27375612 + 27375592 27375632 41 CTGGGGTACTCCGATCTTGACTCCACCACAGCCAGCACCCC CTGGGGTACTCCGATCTTGACTTCACCACAGCCAGCACCCC < 41bp 0.737797101448947 0.470863475813573 0.9297177 0.2037563 prediction 0.475594202897894 Functional Loss - TCF23 ENSG00000163792 CDS Human protein_coding chr2:27375612 chr2:27375614 nonsynonymous SNV 0.881 2 23 hm5C_associated_SNPs_70414 0 0 0 0 1 TCF23 chr2:27375556 3'AG 27375556 Downstream 59bp
chr4 145568082 145568082 1 + G A STAD 145568079 + 145568059 145568099 41 TGCTGCCTGCGGAGTGACAGCCCGGGGCTAGGGCGCCTGGA TGCTGCCTGCGGAGTGACAGCCCAGGGCTAGGGCGCCTGGA < 41bp 0.771850014830823 0.534056045755161 0.7658088 0.3359407 prediction 0.475587938151325 Functional Loss - HHIP ENSG00000164161 CDS Human protein_coding chr4:145568079 chr4:145568082 synonymous SNV . 0 24 hm5C_associated_SNPs_70416 0 0 0 0 1 HHIP chr4:145568106 5'GT 145568106 Upstream 25bp
chr8 23148976 23148976 1 + G A CESC 23148973 + 23148953 23148993 41 CTGGAGAGAAGGACCTTGCCCACGTGGTAGAGATCTATGAC CTGGAGAGAAGGACCTTGCCCACATGGTAGAGATCTATGAC < 41bp 0.743211350645289 0.50541759361585 0.15388593 0.16043496 prediction 0.475587514058877 Functional Loss - R3HCC1 ENSG00000104679 CDS Human protein_coding chr8:23148973 chr8:23148976 nonsynonymous SNV 0.977 4 24 hm5C_associated_SNPs_70417 0 0 1 0 1 R3HCC1 chr8:23149046 5'GT 23149046 Upstream 71bp
chr19 3275915 3275915 1 + G T SARC 3275913 + 3275893 3275933 41 AGTCGGAGGAGGACGTGCTGCGGCTGTTCCAGCCCTTCGGG AGTCGGAGGAGGACGTGCTGCGTCTGTTCCAGCCCTTCGGG < 41bp 0.737790610315348 0.372843328449034 0.87783754 0.08704257 prediction 0.475581220630697 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3275913 chr19:3275915 synonymous SNV . 0 23 hm5C_associated_SNPs_70418 0 0 0 0 2 CELF5 chr19:3275854 3'AG 3275854 Downstream 62bp
chr19 3275915 3275915 1 + G T SARC 3275913 + 3275893 3275933 41 AGTCGGAGGAGGACGTGCTGCGGCTGTTCCAGCCCTTCGGG AGTCGGAGGAGGACGTGCTGCGTCTGTTCCAGCCCTTCGGG < 41bp 0.737790610315348 0.372843328449034 0.87783754 0.08704257 prediction 0.475581220630697 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3275913 chr19:3275915 synonymous SNV . 0 23 hm5C_associated_SNPs_70418 0 0 0 0 2 CELF5 chr19:3275982 5'GT 3275982 Upstream 68bp
chr9 79792642 79792642 1 - G A UCEC 79792644 - 79792624 79792664 41 AAGAACCGGTTCAACACGTCCACGACCACCGACTCGAAAAC AAGAACCGGTTCAACACGTCCATGACCACCGACTCGAAAAC < 41bp 0.772292462834017 0.534502348499535 0.04465285 0.06087911 prediction 0.475580228668963 Functional Loss - VPS13A ENSG00000197969 CDS Human antisense chr9:79792644 chr9:79792642 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_70419 0 0 0 0 1 VPS13A-AS1 chr9:79792543 5'GT 79792543 Upstream 100bp
chr7 142962173 142962173 1 + C T COAD 142962171 + 142962151 142962191 41 CGTCCCGGGAGCTGTGGATGCGCGTCTGGTCAAGGGTGAGT CGTCCCGGGAGCTGTGGATGCGTGTCTGGTCAAGGGTGAGT < 41bp 0.816524833661786 0.578742757378013 0.1317488 0.16116169 prediction 0.475564152567546 Functional Loss - GSTK1 ENSG00000197448 CDS Human protein_coding chr7:142962171 chr7:142962173 synonymous SNV . 0 23 hm5C_associated_SNPs_70421 0 0 1 0 1 GSTK1 chr7:142962085 3'AG 142962085 Downstream 89bp
chr12 126137155 126137155 1 + G A SKCM 126137152 + 126137132 126137172 41 TCGTCTCCACAGCTGCTGCCCTGGATGTTCTTCAGTCCCCA TCGTCTCCACAGCTGCTGCCCTGAATGTTCTTCAGTCCCCA < 41bp 0.746129993225247 0.508349058559403 0.3312958 0.2932868 prediction 0.475561869331688 Functional Loss - TMEM132B ENSG00000139364 CDS Human protein_coding chr12:126137152 chr12:126137155 nonsynonymous SNV 0.012 3 24 hm5C_associated_SNPs_70422 0 0 0 0 1 TMEM132B chr12:126137178 5'GT 126137178 Upstream 24bp
chr5 115177721 115177721 1 + G C rs1050864 115177720 + 115177700 115177740 41 GCCCCCAGTGCCCACCCGGTCGGCCCGGCACAGCCATGATC GCCCCCAGTGCCCACCCGGTCCGCCCGGCACAGCCATGATC < 41bp 0.737780457469853 0.464917926303528 0.32101166 0.11833483 prediction 0.475560914939705 Functional Loss - AP3S1 ENSG00000177879 UTR5 Human protein_coding chr5:115177720 chr5:115177721 . . 0 22 hm5C_associated_SNPs_70423 0 0 1 0 1 AP3S1 chr5:115177803 5'GT 115177803 Upstream 83bp
chr3 50222881 50222881 1 + G A PRAD 50222878 + 50222858 50222898 41 CTGCCCGGCCCGTTCCAGACCGCGGGACAGTGCAGAAGGTC CTGCCCGGCCCGTTCCAGACCGCAGGACAGTGCAGAAGGTC < 41bp 0.750401558386642 0.512632635979098 0.88363284 0.408285 prediction 0.475537844815087 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50222878 chr3:50222881 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_70425 0 0 0 0 2 SEMA3F chr3:50222876 3'AG 50222876 Downstream 6bp
chr3 50222881 50222881 1 + G A PRAD 50222878 + 50222858 50222898 41 CTGCCCGGCCCGTTCCAGACCGCGGGACAGTGCAGAAGGTC CTGCCCGGCCCGTTCCAGACCGCAGGACAGTGCAGAAGGTC < 41bp 0.750401558386642 0.512632635979098 0.88363284 0.408285 prediction 0.475537844815087 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50222878 chr3:50222881 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_70425 0 0 0 0 2 SEMA3F chr3:50222964 5'GT 50222964 Upstream 84bp
chr21 38081499 38081499 1 + C T COAD 38081497 + 38081477 38081517 41 ACGCGTGGGGACAGCCGAGCCGCGCCGGGCCCCTGGACGGC ACGCGTGGGGACAGCCGAGCCGTGCCGGGCCCCTGGACGGC < 41bp 0.798451818803573 0.560683236650783 0.15192881 0.15606105 prediction 0.47553716430558 Functional Loss - SIM2 ENSG00000159263 CDS Human protein_coding chr21:38081497 chr21:38081499 synonymous SNV . 0 23 hm5C_associated_SNPs_70426 0 0 0 0 2 SIM2 chr21:38081468 3'AG 38081468 Downstream 32bp
chr21 38081499 38081499 1 + C T COAD 38081497 + 38081477 38081517 41 ACGCGTGGGGACAGCCGAGCCGCGCCGGGCCCCTGGACGGC ACGCGTGGGGACAGCCGAGCCGTGCCGGGCCCCTGGACGGC < 41bp 0.798451818803573 0.560683236650783 0.15192881 0.15606105 prediction 0.47553716430558 Functional Loss - SIM2 ENSG00000159263 CDS Human protein_coding chr21:38081497 chr21:38081499 synonymous SNV . 0 23 hm5C_associated_SNPs_70426 0 0 0 0 2 SIM2 chr21:38081550 5'GT 38081550 Upstream 52bp
chr19 49703643 49703643 1 + C T UCEC 49703641 + 49703621 49703661 41 GTGCGGCTGCTTCACATCTTCACGGTCAACAAACAGCTGGG GTGCGGCTGCTTCACATCTTCATGGTCAACAAACAGCTGGG < 41bp 0.73776274808095 0.466961060218437 0.18803436 0.22792256 prediction 0.475525496161901 Functional Loss - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49703641 chr19:49703643 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_70429 0 0 1 0 2 TRPM4 chr19:49703557 3'AG 49703557 Downstream 87bp
chr19 49703643 49703643 1 + C T UCEC 49703641 + 49703621 49703661 41 GTGCGGCTGCTTCACATCTTCACGGTCAACAAACAGCTGGG GTGCGGCTGCTTCACATCTTCATGGTCAACAAACAGCTGGG < 41bp 0.73776274808095 0.466961060218437 0.18803436 0.22792256 prediction 0.475525496161901 Functional Loss - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49703641 chr19:49703643 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_70429 0 0 1 0 2 TRPM4 chr19:49703689 5'GT 49703689 Upstream 47bp
chr17 73227683 73227683 1 + G A SARC 73227680 + 73227660 73227700 41 TATTCCAGTTTCGGTTCCAACATGAGAGAGTTCCTCCTGCT TATTCCAGTTTCGGTTCCAACATAAGAGAGTTCCTCCTGCT < 41bp 0.742110119933767 0.504349733828598 0.37663472 0.26394925 prediction 0.475520772210337 Functional Loss - NUP85 ENSG00000125450 CDS Human protein_coding chr17:73227680 chr17:73227683 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_70430 0 0 1 0 2 NUP85 chr17:73227668 3'AG 73227668 Downstream 16bp
chr17 73227683 73227683 1 + G A SARC 73227680 + 73227660 73227700 41 TATTCCAGTTTCGGTTCCAACATGAGAGAGTTCCTCCTGCT TATTCCAGTTTCGGTTCCAACATAAGAGAGTTCCTCCTGCT < 41bp 0.742110119933767 0.504349733828598 0.37663472 0.26394925 prediction 0.475520772210337 Functional Loss - NUP85 ENSG00000125450 CDS Human protein_coding chr17:73227680 chr17:73227683 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_70430 0 0 1 0 2 NUP85 chr17:73227733 5'GT 73227733 Upstream 51bp
chr1 228400285 228400285 1 - C T BLCA 228400288 - 228400268 228400308 41 CCGTCCTTCTTCCACACCGTCTCGGGCTTGGGCTCGCCGGT CCGTCCTTCTTCCACACCGTCTCAGGCTTGGGCTCGCCGGT < 41bp 0.749374054235722 0.511614799321576 0.09650326 0.058898985 prediction 0.475518509828293 Functional Loss - OBSCN ENSG00000154358 CDS Human protein_coding chr1:228400288 chr1:228400285 synonymous SNV . 0 24 hm5C_associated_SNPs_70431 0 0 1 0 1 OBSCN chr1:228400222 5'GT 228400222 Upstream 64bp
chr3 50220987 50220987 1 + G A STAD 50220984 + 50220964 50221004 41 CTCAGGGAAGATGCCCTACCCACGGCCGGGCACGGTAAGGA CTCAGGGAAGATGCCCTACCCACAGCCGGGCACGGTAAGGA < 41bp 0.763903688287322 0.526144512446459 0.11786562 0.041429043 prediction 0.475518351681727 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50220984 chr3:50220987 nonsynonymous SNV 0.979 4 24 hm5C_associated_SNPs_70432 0 0 0 0 1 SEMA3F chr3:50220997 5'GT 50220997 Upstream 11bp
chr6 26423245 26423245 1 + A T UCEC 26423241 + 26423221 26423261 41 CGTTACGATGCTGTCTGTCACCCGAGGAAAATGCTGAGGAC CGTTACGATGCTGTCTGTCACCCGTGGAAAATGCTGAGGAC < 41bp 0.73775094584867 0.435701176425715 0.86579674 0.22131449 prediction 0.47550189169734 Functional Loss - BTN2A3P ENSG00000124549 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:26423241 chr6:26423245 . . 0 25 hm5C_associated_SNPs_70435 0 0 0 0 1 BTN2A3P chr6:26423161 3'AG 26423161 Downstream 85bp
chr3 38125678 38125678 1 + G A STAD 38125675 + 38125655 38125695 41 ATTGCGCTGCAGAACACCACCACGACCAGCCGCTACCTGCG ATTGCGCTGCAGAACACCACCACAACCAGCCGCTACCTGCG < 41bp 0.737750785963605 0.494813586074738 0.18384379 0.11865088 prediction 0.475501571927211 Functional Loss - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38125675 chr3:38125678 synonymous SNV . 0 24 hm5C_associated_SNPs_70436 0 0 0 1 2 DLEC1 chr3:38125649 3'AG 38125649 Downstream 30bp
chr3 38125678 38125678 1 + G A STAD 38125675 + 38125655 38125695 41 ATTGCGCTGCAGAACACCACCACGACCAGCCGCTACCTGCG ATTGCGCTGCAGAACACCACCACAACCAGCCGCTACCTGCG < 41bp 0.737750785963605 0.494813586074738 0.18384379 0.11865088 prediction 0.475501571927211 Functional Loss - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38125675 chr3:38125678 synonymous SNV . 0 24 hm5C_associated_SNPs_70436 0 0 0 1 2 DLEC1 chr3:38125736 5'GT 38125736 Upstream 59bp
chr19 41903824 41903824 1 + G C LUAD 41903823 + 41903803 41903843 41 TGCTGCGGCAGCCTGGGGCTCGGGGACTGGCTAGATCTGTG TGCTGCGGCAGCCTGGGGCTCCGGGACTGGCTAGATCTGTG < 41bp 0.86350966497296 0.625759821191789 0.9054731 0.87076676 prediction 0.475499687562343 Functional Loss - BCKDHA ENSG00000248098 CDS Human protein_coding chr19:41903823 chr19:41903824 nonsynonymous SNV 0.946 2 22 hm5C_associated_SNPs_70437 0 0 1 0 1 BCKDHA chr19:41903840 5'GT 41903840 Upstream 17bp
chr22 27021531 27021531 1 + G T LUAD 27021529 + 27021509 27021549 41 CCAAGCTGGGATGCCTGGGGCGGCAACACGGCCTACCCCGC CCAAGCTGGGATGCCTGGGGCGTCAACACGGCCTACCCCGC < 41bp 0.899952266012954 0.662209981403531 0.89559704 0.5880357 prediction 0.475484569218846 Functional Loss - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27021529 chr22:27021531 nonsynonymous SNV 0.918 4 23 hm5C_associated_SNPs_70439 0 0 0 0 2 CRYBA4 chr22:27021445 3'AG 27021445 Downstream 87bp
chr22 27021531 27021531 1 + G T LUAD 27021529 + 27021509 27021549 41 CCAAGCTGGGATGCCTGGGGCGGCAACACGGCCTACCCCGC CCAAGCTGGGATGCCTGGGGCGTCAACACGGCCTACCCCGC < 41bp 0.899952266012954 0.662209981403531 0.89559704 0.5880357 prediction 0.475484569218846 Functional Loss - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27021529 chr22:27021531 nonsynonymous SNV 0.918 4 23 hm5C_associated_SNPs_70439 0 0 0 0 2 CRYBA4 chr22:27021586 5'GT 27021586 Upstream 56bp
chr1 15430638 15430638 1 + C T SKCM 15430636 + 15430616 15430656 41 TCCCCAGTGGGAAGCACATCCTCCGGAGACACCTGGCAGAG TCCCCAGTGGGAAGCACATCCTTCGGAGACACCTGGCAGAG < 41bp 0.737734000729029 0.464458926293137 0.24271452 0.16618147 prediction 0.475468001458059 Functional Loss - KAZN ENSG00000189337 CDS Human protein_coding chr1:15430636 chr1:15430638 synonymous SNV . 0 23 hm5C_associated_SNPs_70444 0 0 0 0 1 KAZN chr1:15430685 5'GT 15430685 Upstream 48bp
chr22 50644876 50644876 1 + G A UCEC 50644873 + 50644853 50644893 41 CGTCCGAGTCCACGGTGGTGCGCGACGTGTTCTATGATGGT CGTCCGAGTCCACGGTGGTGCGCAACGTGTTCTATGATGGT < 41bp 0.737731270120937 0.490892200134047 0.32246196 0.16444066 prediction 0.475462540241874 Functional Loss - SELENOO ENSG00000073169 CDS Human protein_coding chr22:50644873 chr22:50644876 unknown 0.802 4 24 hm5C_associated_SNPs_70446 0 0 1 0 1 SELENOO chr22:50644949 5'GT 50644949 Upstream 74bp
chr22 32480433 32480433 1 + C T COAD 32480431 + 32480411 32480451 41 ACCGATGTTTTCCAGCTTTTCACGAAGTGGGAGGCTATGAC ACCGATGTTTTCCAGCTTTTCATGAAGTGGGAGGCTATGAC < 41bp 0.737726129716652 0.472262490697594 0.5682158 0.5008179 prediction 0.475452259433304 Functional Loss - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32480431 chr22:32480433 synonymous SNV . 0 23 hm5C_associated_SNPs_70448 0 0 0 0 1 SLC5A1 chr22:32480426 3'AG 32480426 Downstream 8bp
chr9 137777101 137777101 1 + G A SKCM 137777098 + 137777078 137777118 41 TTCCCAGGCCCGCGTACCTGCAAGGACCTGCTAGACCGAGG TTCCCAGGCCCGCGTACCTGCAAAGACCTGCTAGACCGAGG < 41bp 0.749266821232266 0.511541885029489 0.8811048 0.77721953 prediction 0.475449872405555 Functional Loss - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137777098 chr9:137777101 synonymous SNV . 0 24 hm5C_associated_SNPs_70450 0 0 0 0 1 FCN2 chr9:137777085 3'AG 137777085 Downstream 17bp
chr17 79769647 79769647 1 + G A ESCA 79769644 + 79769624 79769664 41 TGCTGGGCCTGGCCACCCTCCCCGAGAGGAGCTTCTTCAGC TGCTGGGCCTGGCCACCCTCCCCAAGAGGAGCTTCTTCAGC < 41bp 0.737722966085685 0.486807418300101 0.24925077 0.15279025 prediction 0.47544593217137 Functional Loss - GCGR ENSG00000215644 CDS Human protein_coding chr17:79769644 chr17:79769647 nonsynonymous SNV 0.477 1 24 hm5C_associated_SNPs_70451 0 0 0 0 1 GCGR chr17:79769686 5'GT 79769686 Upstream 40bp
chr9 130469447 130469447 1 + G C UCEC 130469446 + 130469426 130469466 41 AGTTCTACCACATCCAGATCCGAGACCTGGAGGACCGGCTA AGTTCTACCACATCCAGATCCCAGACCTGGAGGACCGGCTA < 41bp 0.860695487082338 0.622977240543251 0.6766623 0.23442364 prediction 0.475436493078174 Functional Loss - CFAP157 ENSG00000160401 CDS Human protein_coding chr9:130469446 chr9:130469447 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_70452 0 0 0 0 1 CFAP157 chr9:130469471 5'GT 130469471 Upstream 25bp
chr11 75438579 75438579 1 + G T LUSC 75438577 + 75438557 75438597 41 AGCCTTTGCCAACCTGTGCACTGAGAGCACAGGCTTCTCTT AGCCTTTGCCAACCTGTGCACTTAGAGCACAGGCTTCTCTT < 41bp 0.737716315275724 0.374901940692699 0.023956269 0.014051288 prediction 0.475432630551449 Functional Loss - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75438577 chr11:75438579 stopgain 0.946 1 23 hm5C_associated_SNPs_70453 0 0 1 0 1 MOGAT2 chr11:75438480 3'AG 75438480 Downstream 100bp
chr20 61449889 61449889 1 + G A SKCM 61449886 + 61449866 61449906 41 ACAGGGAGAAGCTGGTCCTCCAGGTCTGCCTGGGCCCCCGG ACAGGGAGAAGCTGGTCCTCCAGATCTGCCTGGGCCCCCGG < 41bp 0.768133804955674 0.530419000096313 0.6718789 0.47279042 prediction 0.475429609718722 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449886 chr20:61449889 nonsynonymous SNV 0.953 4 24 hm5C_associated_SNPs_70455 0 0 1 0 2 COL9A3 chr20:61449870 3'AG 61449870 Downstream 20bp
chr20 61449889 61449889 1 + G A SKCM 61449886 + 61449866 61449906 41 ACAGGGAGAAGCTGGTCCTCCAGGTCTGCCTGGGCCCCCGG ACAGGGAGAAGCTGGTCCTCCAGATCTGCCTGGGCCCCCGG < 41bp 0.768133804955674 0.530419000096313 0.6718789 0.47279042 prediction 0.475429609718722 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449886 chr20:61449889 nonsynonymous SNV 0.953 4 24 hm5C_associated_SNPs_70455 0 0 1 0 2 COL9A3 chr20:61449905 5'GT 61449905 Upstream 17bp
chr2 96012796 96012796 1 + C T COAD 96012794 + 96012774 96012814 41 ATCCAGGGCATGGAGCTGTGCGCCATGGCCGTGGTGGTGCT ATCCAGGGCATGGAGCTGTGCGTCATGGCCGTGGTGGTGCT < 41bp 0.782916163715171 0.545201718127611 0.053550065 0.09462622 prediction 0.475428891175122 Functional Loss - KCNIP3 ENSG00000115041 CDS Human protein_coding chr2:96012794 chr2:96012796 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_70456 0 0 0 0 1 KCNIP3 chr2:96012870 5'GT 96012870 Upstream 75bp
chr3 45561788 45561788 1 + G A STAD 45561785 + 45561765 45561805 41 ATGGGACTCAGCAATGCCCTCTCGGTAAGTGGCCTGTCCTC ATGGGACTCAGCAATGCCCTCTCAGTAAGTGGCCTGTCCTC < 41bp 0.751474481220952 0.513767381155831 0.11526367 0.040637314 prediction 0.475414200130242 Functional Loss - LARS2 ENSG00000011376 CDS Human protein_coding chr3:45561785 chr3:45561788 synonymous SNV . 0 24 hm5C_associated_SNPs_70460 0 0 1 0 2 LARS2 chr3:45561711 3'AG 45561711 Downstream 78bp
chr3 45561788 45561788 1 + G A STAD 45561785 + 45561765 45561805 41 ATGGGACTCAGCAATGCCCTCTCGGTAAGTGGCCTGTCCTC ATGGGACTCAGCAATGCCCTCTCAGTAAGTGGCCTGTCCTC < 41bp 0.751474481220952 0.513767381155831 0.11526367 0.040637314 prediction 0.475414200130242 Functional Loss - LARS2 ENSG00000011376 CDS Human protein_coding chr3:45561785 chr3:45561788 synonymous SNV . 0 24 hm5C_associated_SNPs_70460 0 0 1 0 2 LARS2 chr3:45561788 5'GT 45561788 Upstream 1bp
chr4 187197452 187197452 1 + C T STAD 187197450 + 187197430 187197470 41 ACATCGACAGTGTCATGGCTCCCGATGCTTTTGTCTGTGGC ACATCGACAGTGTCATGGCTCCTGATGCTTTTGTCTGTGGC < 41bp 0.737702154347102 0.450457827498024 0.08838305 0.33017159 prediction 0.475404308694205 Functional Loss - F11 ENSG00000088926 CDS Human protein_coding chr4:187197450 chr4:187197452 synonymous SNV . 0 23 hm5C_associated_SNPs_70465 0 0 0 0 2 F11 chr4:187197385 3'AG 187197385 Downstream 68bp
chr4 187197452 187197452 1 + C T STAD 187197450 + 187197430 187197470 41 ACATCGACAGTGTCATGGCTCCCGATGCTTTTGTCTGTGGC ACATCGACAGTGTCATGGCTCCTGATGCTTTTGTCTGTGGC < 41bp 0.737702154347102 0.450457827498024 0.08838305 0.33017159 prediction 0.475404308694205 Functional Loss - F11 ENSG00000088926 CDS Human protein_coding chr4:187197450 chr4:187197452 synonymous SNV . 0 23 hm5C_associated_SNPs_70465 0 0 0 0 2 F11 chr4:187197544 5'GT 187197544 Upstream 93bp
chr14 61952304 61952304 1 + C T UCEC 61952302 + 61952282 61952322 41 GTCTCGTCGTTTTGATGAAGCACGAGCTCGCTTCTATGCTG GTCTCGTCGTTTTGATGAAGCATGAGCTCGCTTCTATGCTG < 41bp 0.828511266990499 0.590814522584416 0.16103935 0.07652184 prediction 0.475393488812166 Functional Loss - PRKCH ENSG00000027075 CDS Human protein_coding chr14:61952302 chr14:61952304 stopgain 0.976 1 23 hm5C_associated_SNPs_70466 0 0 0 0 2 PRKCH chr14:61952220 3'AG 61952220 Downstream 85bp
chr14 61952304 61952304 1 + C T UCEC 61952302 + 61952282 61952322 41 GTCTCGTCGTTTTGATGAAGCACGAGCTCGCTTCTATGCTG GTCTCGTCGTTTTGATGAAGCATGAGCTCGCTTCTATGCTG < 41bp 0.828511266990499 0.590814522584416 0.16103935 0.07652184 prediction 0.475393488812166 Functional Loss - PRKCH ENSG00000027075 CDS Human protein_coding chr14:61952302 chr14:61952304 stopgain 0.976 1 23 hm5C_associated_SNPs_70466 0 0 0 0 2 PRKCH chr14:61952374 5'GT 61952374 Upstream 71bp
chr6 126278232 126278232 1 + A C LIHC 126278231 + 126278211 126278251 41 GGGACCTGTGAAGCCGCTGGCAAGTCACCAGAGCCCAAGGA GGGACCTGTGAAGCCGCTGGCCAGTCACCAGAGCCCAAGGA < 41bp 0.737696692020905 0.489167774932321 0.2894761 0.11304155 prediction 0.47539338404181 Functional Loss - HINT3 ENSG00000111911 CDS Human protein_coding chr6:126278231 chr6:126278232 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_70467 0 0 1 0 1 HINT3 chr6:126278324 5'GT 126278324 Upstream 93bp
chr16 8736394 8736394 1 + T C KIRP 8736393 + 8736373 8736413 41 GCCCACAGATTGAAAAATGCCTGCACAGCCATACTGTCGGT GCCCACAGATTGAAAAATGCCCGCACAGCCATACTGTCGGT < 41bp 0.80579961553221 0.568106689592396 0.11782208 0.040543586 prediction 0.475385851879628 Functional Loss - METTL22 ENSG00000067365 CDS Human protein_coding chr16:8736393 chr16:8736394 nonsynonymous SNV 0.974 2 22 hm5C_associated_SNPs_70469 0 0 1 0 1 METTL22 chr16:8736422 5'GT 8736422 Upstream 29bp
chr6 150713632 150713632 1 + G T COAD 150713629 + 150713609 150713649 41 CATCGCTGGGTCACAGACCTCAAGAAACTGAGGTACAAACA CATCGCTGGGTCACAGACCTCAATAAACTGAGGTACAAACA < 41bp 0.737691423170458 0.360438055683299 0.35859317 0.19750038 prediction 0.475382846340916 Functional Loss - IYD ENSG00000009765 CDS Human protein_coding chr6:150713629 chr6:150713632 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_70470 0 0 0 0 1 IYD chr6:150713640 5'GT 150713640 Upstream 9bp
chr2 113479811 113479811 1 + C T TGCT 113479809 + 113479789 113479829 41 ACCTGCTGAAGGTGGACGCCCACGGGAATGTGCTGCTGGGT ACCTGCTGAAGGTGGACGCCCATGGGAATGTGCTGCTGGGT < 41bp 0.738609042586305 0.500917847961451 0.7077253 0.57556885 prediction 0.475382389249709 Functional Loss - NT5DC4 ENSG00000144130 CDS Human protein_coding chr2:113479809 chr2:113479811 synonymous SNV . 0 23 hm5C_associated_SNPs_70471 0 0 0 0 2 NT5DC4 chr2:113479760 3'AG 113479760 Downstream 52bp
chr2 113479811 113479811 1 + C T TGCT 113479809 + 113479789 113479829 41 ACCTGCTGAAGGTGGACGCCCACGGGAATGTGCTGCTGGGT ACCTGCTGAAGGTGGACGCCCATGGGAATGTGCTGCTGGGT < 41bp 0.738609042586305 0.500917847961451 0.7077253 0.57556885 prediction 0.475382389249709 Functional Loss - NT5DC4 ENSG00000144130 CDS Human protein_coding chr2:113479809 chr2:113479811 synonymous SNV . 0 23 hm5C_associated_SNPs_70471 0 0 0 0 2 NT5DC4 chr2:113479855 5'GT 113479855 Upstream 45bp
chr11 65651072 65651072 1 + G A UCEC 65651069 + 65651049 65651089 41 AGAAACCGGATATGAAGCCCCGAGTCTCCTGCCCTCCCTGA AGAAACCGGATATGAAGCCCCGAATCTCCTGCCCTCCCTGA < 41bp 0.757358314822462 0.519667764004032 0.32832456 0.12064615 prediction 0.475381101636859 Functional Loss - CTSW ENSG00000172543 CDS Human protein_coding chr11:65651069 chr11:65651072 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_70472 0 0 0 1 1 CTSW chr11:65650979 3'AG 65650979 Downstream 94bp
chr14 77242313 77242313 1 + C T BLCA 77242311 + 77242291 77242331 41 ACTTCTCAGGGAACTACTTCCGCCACATCGTGCTGGGGGTG ACTTCTCAGGGAACTACTTCCGTCACATCGTGCTGGGGGTG < 41bp 0.737689081886647 0.445309952657297 0.23027974 0.2713652 prediction 0.475378163773294 Functional Loss - VASH1 ENSG00000071246 CDS Human protein_coding chr14:77242311 chr14:77242313 synonymous SNV . 0 23 hm5C_associated_SNPs_70474 0 0 0 0 1 VASH1 chr14:77242235 3'AG 77242235 Downstream 79bp
chr4 3495172 3495172 1 + G T PAAD 3495170 + 3495150 3495190 41 CCCCCACGCGGGGCCACCCCCGGCTTTCTTTTCGGCATGTC CCCCCACGCGGGGCCACCCCCGTCTTTCTTTTCGGCATGTC < 41bp 0.737685651915098 0.391438719558369 0.82415974 0.16940632 prediction 0.475371303830197 Functional Loss - DOK7 ENSG00000175920 CDS Human protein_coding chr4:3495170 chr4:3495172 nonsynonymous SNV 0.569 4 23 hm5C_associated_SNPs_70476 0 0 0 0 1 DOK7 chr4:3495210 5'GT 3495210 Upstream 39bp
chr3 196050777 196050777 1 + G T LUAD 196050775 + 196050755 196050795 41 AGCTGGAGCAGGCTGATGCACAGAAGGGCGGAGAAGAGGGA AGCTGGAGCAGGCTGATGCACATAAGGGCGGAGAAGAGGGA < 41bp 0.737685389201893 0.418790381826305 0.42249307 0.24392983 prediction 0.475370778403786 Functional Loss - TM4SF19 ENSG00000145107;ENSG00000273331 CDS Human other chr3:196050775 chr3:196050777 nonsynonymous SNV 0.972 4 23 hm5C_associated_SNPs_70477 0 0 0 0 1 TM4SF19 chr3:196050701 3'AG 196050701 Downstream 77bp
chr2 181927573 181927573 1 + C T COAD 181927571 + 181927551 181927591 41 ATTTGACCAACAGAGCAGAACACGACAGGATAGCCAGACAG ATTTGACCAACAGAGCAGAACATGACAGGATAGCCAGACAG < 41bp 0.810840088410434 0.573155270078251 0.17912433 0.16699365 prediction 0.475369636664366 Functional Loss - UBE2E3 ENSG00000170035 CDS Human protein_coding chr2:181927571 chr2:181927573 synonymous SNV . 0 23 hm5C_associated_SNPs_70478 0 0 1 0 1 UBE2E3 chr2:181927518 3'AG 181927518 Downstream 56bp
chr9 138011423 138011423 1 + C T UCEC 138011421 + 138011401 138011441 41 TCCATGGTTGACTTCATGAACACGGACAATTTCACCTCCCA TCCATGGTTGACTTCATGAACATGGACAATTTCACCTCCCA < 41bp 0.775700392002704 0.53801745818351 0.08747271 0.045670748 prediction 0.475365867638387 Functional Loss - OLFM1 ENSG00000130558 CDS Human protein_coding chr9:138011421 chr9:138011423 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_70482 0 0 1 0 1 OLFM1 chr9:138011350 3'AG 138011350 Downstream 74bp
chrX 150911608 150911608 1 + G T LUAD 150911606 + 150911586 150911626 41 TGGTCAAAGATACCAAGAAACTGCGAGACAACTACATCCAC TGGTCAAAGATACCAAGAAACTTCGAGACAACTACATCCAC < 41bp 0.737674839764122 0.391821325303595 0.33883965 0.12212825 prediction 0.475349679528245 Functional Loss - CNGA2 ENSG00000183862 CDS Human protein_coding chrX:150911606 chrX:150911608 synonymous SNV . 0 23 hm5C_associated_SNPs_70484 0 0 0 0 1 CNGA2 chrX:150911565 3'AG 150911565 Downstream 44bp
chr1 20005188 20005188 1 + G A SKCM 20005185 + 20005165 20005205 41 CTGGGCATGTTCTTTGTGACCTGGTTGCCCTTCTTTGTGGC CTGGGCATGTTCTTTGTGACCTGATTGCCCTTCTTTGTGGC < 41bp 0.758260756962993 0.520592293705923 0.17852408 0.07977033 prediction 0.475336926514141 Functional Loss - HTR6 ENSG00000158748 CDS Human protein_coding chr1:20005185 chr1:20005188 stopgain 1.000 1 24 hm5C_associated_SNPs_70487 0 0 0 0 1 HTR6 chr1:20005218 5'GT 20005218 Upstream 31bp
chr19 15770046 15770046 1 + G A LUAD 15770043 + 15770023 15770063 41 CCCCAAGGAACTGCATCGGGCAGGCGTTCGCGATGGCGGAG CCCCAAGGAACTGCATCGGGCAGACGTTCGCGATGGCGGAG < 41bp 0.753096873141881 0.515430260728392 0.44408098 0.24654105 prediction 0.475333224826977 Functional Loss - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15770043 chr19:15770046 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_70488 0 0 1 0 1 CYP4F3 chr19:15770030 3'AG 15770030 Downstream 17bp
chr14 51347289 51347289 1 + G T LGG 51347287 + 51347267 51347307 41 CTTCATGGCAGTGCAGAACACAGGTCAGTGGCTCTGCTTAC CTTCATGGCAGTGCAGAACACATGTCAGTGGCTCTGCTTAC < 41bp 0.737661042449764 0.39217428550096 0.36817813 0.11636782 prediction 0.475322084899529 Functional Loss - ABHD12B ENSG00000131969 CDS Human protein_coding chr14:51347287 chr14:51347289 nonsynonymous SNV 0.968 4 23 hm5C_associated_SNPs_70489 0 0 0 3 1 ABHD12B chr14:51347289 5'GT 51347289 Upstream 1bp
chr1 221057598 221057598 1 + A C LUSC 221057597 + 221057577 221057617 41 ACTCCAAGGAGGCCCAGGCCCAAAAGGACAAGGACAAGGAG ACTCCAAGGAGGCCCAGGCCCCAAAGGACAAGGACAAGGAG < 41bp 0.792047743217868 0.554388118331096 0.21492171 0.119270116 prediction 0.475319249773545 Functional Loss - HLX ENSG00000136630 CDS Human protein_coding chr1:221057597 chr1:221057598 nonsynonymous SNV 0.977 1 22 hm5C_associated_SNPs_70490 0 0 0 0 1 HLX chr1:221057537 3'AG 221057537 Downstream 62bp
chrX 65480022 65480022 1 + T C LUSC 65480021 + 65480001 65480041 41 GGAGATGGTGGCCAGCAACCCTGGGACATGGCTGATGCACT GGAGATGGTGGCCAGCAACCCCGGGACATGGCTGATGCACT < 41bp 0.743653626221109 0.505999796194839 0.41442853 0.69769627 prediction 0.47530766005254 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65480021 chrX:65480022 synonymous SNV . 0 22 hm5C_associated_SNPs_70493 0 0 1 0 2 HEPH chrX:65479942 3'AG 65479942 Downstream 81bp
chrX 65480022 65480022 1 + T C LUSC 65480021 + 65480001 65480041 41 GGAGATGGTGGCCAGCAACCCTGGGACATGGCTGATGCACT GGAGATGGTGGCCAGCAACCCCGGGACATGGCTGATGCACT < 41bp 0.743653626221109 0.505999796194839 0.41442853 0.69769627 prediction 0.47530766005254 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65480021 chrX:65480022 synonymous SNV . 0 22 hm5C_associated_SNPs_70493 0 0 1 0 2 HEPH chrX:65480104 5'GT 65480104 Upstream 83bp
chr19 51647745 51647745 1 + G A SKCM 51647742 + 51647722 51647762 41 AATCTGACCTGCTCTGTGCCCTGGGCCTGTGAGCAGGGGAC AATCTGACCTGCTCTGTGCCCTGAGCCTGTGAGCAGGGGAC < 41bp 0.771351008169966 0.533697547023083 0.2549575 0.10864055 prediction 0.475306922293766 Functional Loss - SIGLEC7 ENSG00000168995 CDS Human protein_coding chr19:51647742 chr19:51647745 stopgain 0.966 0 24 hm5C_associated_SNPs_70494 0 0 0 0 1 SIGLEC7 chr19:51647663 3'AG 51647663 Downstream 83bp
chr7 37988586 37988586 1 + C T SKCM 37988583 + 37988563 37988603 41 TCCACCTTTGAAGACCAGTACTCCATCGGGGGGCCTCAGGA TCCACCTTTGAAGACCAGTACTCTATCGGGGGGCCTCAGGA < 41bp 0.740871562167551 0.503218782235337 0.95330584 0.9251785 prediction 0.475305559864428 Functional Loss - EPDR1 ENSG00000086289 CDS Human protein_coding chr7:37988583 chr7:37988586 synonymous SNV . 0 24 hm5C_associated_SNPs_70495 0 0 1 0 1 EPDR1 chr7:37988650 5'GT 37988650 Upstream 65bp
chr20 53208341 53208341 1 + G A HNSC 53208338 + 53208318 53208358 41 TACGTGGTTCACTTTTGAGGCAGGGAGGTGAGTTTAATGAC TACGTGGTTCACTTTTGAGGCAGAGAGGTGAGTTTAATGAC < 41bp 0.74137421887412 0.503721474678495 0.67029744 0.48363137 prediction 0.47530548839125 Functional Loss - DOK5 ENSG00000101134 CDS Human protein_coding chr20:53208338 chr20:53208341 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_70496 0 0 0 0 1 DOK5 chr20:53208344 5'GT 53208344 Upstream 4bp
chr3 50254864 50254864 1 + A C UCEC 50254863 + 50254843 50254883 41 GCAGGCTACCTGGGCTACTCCAGCGGCTTCTCTCTTAGCTG GCAGGCTACCTGGGCTACTCCCGCGGCTTCTCTCTTAGCTG < 41bp 0.737651793797354 0.494285899179778 0.6861651 0.6961003 prediction 0.475303587594708 Functional Loss - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50254863 chr3:50254864 . 0.998 2 22 hm5C_associated_SNPs_70497 0 0 0 0 2 SLC38A3 chr3:50254847 3'AG 50254847 Downstream 18bp
chr3 50254864 50254864 1 + A C UCEC 50254863 + 50254843 50254883 41 GCAGGCTACCTGGGCTACTCCAGCGGCTTCTCTCTTAGCTG GCAGGCTACCTGGGCTACTCCCGCGGCTTCTCTCTTAGCTG < 41bp 0.737651793797354 0.494285899179778 0.6861651 0.6961003 prediction 0.475303587594708 Functional Loss - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50254863 chr3:50254864 . 0.998 2 22 hm5C_associated_SNPs_70497 0 0 0 0 2 SLC38A3 chr3:50254905 5'GT 50254905 Upstream 42bp
chr6 154439830 154439830 1 + G T STAD 154439827 + 154439807 154439847 41 TCTCCTTTCAGCTAGAAAATCTGGAAGCAGAAACTGCTCCG TCTCCTTTCAGCTAGAAAATCTGTAAGCAGAAACTGCTCCG < 41bp 0.864068699046259 0.626416918019849 0.68858695 0.3440747 prediction 0.475303562052821 Functional Loss - OPRM1 ENSG00000112038 CDS Human protein_coding chr6:154439827 chr6:154439830 stopgain 1.000 0 24 hm5C_associated_SNPs_70498 0 0 0 0 1 OPRM1 chr6:154439818 3'AG 154439818 Downstream 13bp
chr9 4583043 4583043 1 + C T LUAD 4583041 + 4583021 4583061 41 CTGGTATGTTTCTGCAGTATCACGGCCACATCTGCCAGCAT CTGGTATGTTTCTGCAGTATCATGGCCACATCTGCCAGCAT < 41bp 0.80937181848187 0.571733471377827 0.8917595 0.91094655 prediction 0.475276694208086 Functional Loss - SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4583041 chr9:4583043 nonsynonymous SNV 0.146 3 23 hm5C_associated_SNPs_70507 0 0 1 0 1 SLC1A1 chr9:4583038 3'AG 4583038 Downstream 6bp
chr22 35811869 35811869 1 + G A COAD 35811866 + 35811846 35811886 41 AGCGCAGCTGGACTGACAGCCTCGGTGATGAGGGACCCTTC AGCGCAGCTGGACTGACAGCCTCAGTGATGAGGGACCCTTC < 41bp 0.74326134721951 0.505631734806977 0.19794187 0.14944151 prediction 0.475259224825067 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35811866 chr22:35811869 synonymous SNV . 0 24 hm5C_associated_SNPs_70511 0 0 1 1 2 MCM5 chr22:35811822 3'AG 35811822 Downstream 48bp
chr22 35811869 35811869 1 + G A COAD 35811866 + 35811846 35811886 41 AGCGCAGCTGGACTGACAGCCTCGGTGATGAGGGACCCTTC AGCGCAGCTGGACTGACAGCCTCAGTGATGAGGGACCCTTC < 41bp 0.74326134721951 0.505631734806977 0.19794187 0.14944151 prediction 0.475259224825067 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35811866 chr22:35811869 synonymous SNV . 0 24 hm5C_associated_SNPs_70511 0 0 1 1 2 MCM5 chr22:35811965 5'GT 35811965 Upstream 97bp
chr4 110452656 110452656 1 + G T LUAD 110452654 + 110452634 110452674 41 ATGATTCATCCCAACTTATACAGGATAGACAGATTGACAGA ATGATTCATCCCAACTTATACATGATAGACAGATTGACAGA < 41bp 0.737629205207064 0.413398214179579 0.51590455 0.03498903 prediction 0.475258410414129 Functional Loss - SEC24B ENSG00000138802 CDS Human protein_coding chr4:110452654 chr4:110452656 nonsynonymous SNV 0.983 4 23 hm5C_associated_SNPs_70512 0 0 1 0 1 SEC24B chr4:110452678 5'GT 110452678 Upstream 23bp
chr6 123118053 123118053 1 + G T LUSC 123118050 + 123118030 123118070 41 ACTAATATGACAACCACCATCCAGAGTCTCTTTCCAAATCT ACTAATATGACAACCACCATCCATAGTCTCTTTCCAAATCT < 41bp 0.737619252385049 0.350379499637941 0.29394883 0.111916244 prediction 0.475238504770099 Functional Loss - SMPDL3A ENSG00000172594 CDS Human protein_coding chr6:123118050 chr6:123118053 nonsynonymous SNV 0.075 1 24 hm5C_associated_SNPs_70518 0 0 0 0 2 SMPDL3A chr6:123117969 3'AG 123117969 Downstream 85bp
chr6 123118053 123118053 1 + G T LUSC 123118050 + 123118030 123118070 41 ACTAATATGACAACCACCATCCAGAGTCTCTTTCCAAATCT ACTAATATGACAACCACCATCCATAGTCTCTTTCCAAATCT < 41bp 0.737619252385049 0.350379499637941 0.29394883 0.111916244 prediction 0.475238504770099 Functional Loss - SMPDL3A ENSG00000172594 CDS Human protein_coding chr6:123118050 chr6:123118053 nonsynonymous SNV 0.075 1 24 hm5C_associated_SNPs_70518 0 0 0 0 2 SMPDL3A chr6:123118113 5'GT 123118113 Upstream 61bp
chr5 43653246 43653246 1 + G A UCEC 43653243 + 43653223 43653263 41 CTGGAGGACTGGCAGCCACCCTCGGAGTCCTAAAACCGGGC CTGGAGGACTGGCAGCCACCCTCAGAGTCCTAAAACCGGGC < 41bp 0.758884873823622 0.521265846932211 0.46059498 0.20422 prediction 0.475238053782822 Functional Loss - NNT ENSG00000112992 CDS Human protein_coding chr5:43653243 chr5:43653246 nonsynonymous SNV 0.992 5 24 hm5C_associated_SNPs_70519 0 0 1 0 1 NNT chr5:43653315 5'GT 43653315 Upstream 70bp
chr12 3149605 3149605 1 + C T rs35927536 3149603 + 3149583 3149623 41 TTGAGGTGTCAGCCAGTGAGCACGGGGCTCAGCACCACATC TTGAGGTGTCAGCCAGTGAGCATGGGGCTCAGCACCACATC < 41bp 0.767807409813396 0.530188570173791 0.90051556 0.89880073 prediction 0.475237679279211 Functional Loss - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3149603 chr12:3149605 synonymous SNV . 0 23 hm5C_associated_SNPs_70520 0 0 0 0 1 TEAD4 chr12:3149531 3'AG 3149531 Downstream 75bp
chr2 234363497 234363497 1 + G A UCEC 234363494 + 234363474 234363514 41 CCCTGGACTTTAACAACAAGCGCGATGAGCACCCAGAGAAG CCCTGGACTTTAACAACAAGCGCAATGAGCACCCAGAGAAG < 41bp 0.747263166123993 0.509644999424031 0.15431821 0.06031558 prediction 0.475236333399924 Functional Loss - DGKD ENSG00000077044 CDS Human protein_coding chr2:234363494 chr2:234363497 nonsynonymous SNV 0.660 4 24 hm5C_associated_SNPs_70521 0 0 1 2 2 DGKD chr2:234363409 3'AG 234363409 Downstream 89bp
chr2 234363497 234363497 1 + G A UCEC 234363494 + 234363474 234363514 41 CCCTGGACTTTAACAACAAGCGCGATGAGCACCCAGAGAAG CCCTGGACTTTAACAACAAGCGCAATGAGCACCCAGAGAAG < 41bp 0.747263166123993 0.509644999424031 0.15431821 0.06031558 prediction 0.475236333399924 Functional Loss - DGKD ENSG00000077044 CDS Human protein_coding chr2:234363494 chr2:234363497 nonsynonymous SNV 0.660 4 24 hm5C_associated_SNPs_70521 0 0 1 2 2 DGKD chr2:234363519 5'GT 234363519 Upstream 23bp
chr12 107114613 107114613 1 + G A UCEC 107114610 + 107114590 107114630 41 GATGTGGTCCTGTTTCGGCACAAGGGTGATCCGGGACATGA GATGTGGTCCTGTTTCGGCACAAAGGTGATCCGGGACATGA < 41bp 0.741710758617822 0.504093246533354 0.4338825 0.14379928 prediction 0.475235024168936 Functional Loss - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107114610 chr12:107114613 nonsynonymous SNV 0.945 3 24 hm5C_associated_SNPs_70522 0 0 0 0 2 RFX4 chr12:107114537 3'AG 107114537 Downstream 77bp
chr12 107114613 107114613 1 + G A UCEC 107114610 + 107114590 107114630 41 GATGTGGTCCTGTTTCGGCACAAGGGTGATCCGGGACATGA GATGTGGTCCTGTTTCGGCACAAAGGTGATCCGGGACATGA < 41bp 0.741710758617822 0.504093246533354 0.4338825 0.14379928 prediction 0.475235024168936 Functional Loss - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107114610 chr12:107114613 nonsynonymous SNV 0.945 3 24 hm5C_associated_SNPs_70522 0 0 0 0 2 RFX4 chr12:107114654 5'GT 107114654 Upstream 42bp
chr19 18961599 18961599 1 + G T UCEC 18961596 + 18961576 18961616 41 TGCTTCCTGTCCTGGCTGGTCAAGATCCCCTCCGAGCAGGA TGCTTCCTGTCCTGGCTGGTCAATATCCCCTCCGAGCAGGA < 41bp 0.737615659225542 0.33444820447949 0.39488456 0.11935219 prediction 0.475231318451084 Functional Loss - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18961596 chr19:18961599 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_70524 0 0 1 0 1 UPF1 chr19:18961677 5'GT 18961677 Upstream 79bp
chr3 160942826 160942826 1 + G T SARC 160942823 + 160942803 160942843 41 CAAGGTATTCCGAAACAAGTCTCGATTTCGTTCTGCAAACA CAAGGTATTCCGAAACAAGTCTCTATTTCGTTCTGCAAACA < 41bp 0.911768623700386 0.674153857736861 0.71850437 0.82157207 prediction 0.475229531927049 Functional Loss - NMD3 ENSG00000169251 CDS Human protein_coding chr3:160942823 chr3:160942826 synonymous SNV . 0 24 hm5C_associated_SNPs_70525 0 0 0 0 1 NMD3 chr3:160942852 5'GT 160942852 Upstream 27bp
chr16 83941865 83941865 1 + G A rs77493891 83941862 + 83941842 83941882 41 CGTTTTGCACGTGGCACTGACTGGTGACATCTCCAGCAACA CGTTTTGCACGTGGCACTGACTGATGACATCTCCAGCAACA < 41bp 0.737613308854471 0.491635253283894 0.0052480698 0.0008440614 prediction 0.475226617708942 Functional Loss - MLYCD ENSG00000103150;ENSG00000260300 CDS Human other chr16:83941862 chr16:83941865 nonsynonymous SNV 0.233 1 24 hm5C_associated_SNPs_70526 0 0 1 0 1 MLYCD chr16:83941887 5'GT 83941887 Upstream 23bp
chr4 155487137 155487137 1 + G A UCS 155487134 + 155487114 155487154 41 CTGATGCTGGAGGCTGTCTTCACGCTGACCCAGACCTGGTG CTGATGCTGGAGGCTGTCTTCACACTGACCCAGACCTGGTG < 41bp 0.749225295980821 0.51162149500507 0.30773944 0.28426677 prediction 0.475207601951502 Functional Loss - FGB ENSG00000171564 CDS Human protein_coding chr4:155487134 chr4:155487137 nonsynonymous SNV 0.991 1 24 hm5C_associated_SNPs_70528 1 0 1 0 1 FGB chr4:155487151 5'GT 155487151 Upstream 15bp
chrX 149531095 149531095 1 + G A rs183300201 149531092 + 149531072 149531112 41 TCTTTCCACCAGCGCACCGCCTAGGCAAGCCAGCTGACGCC TCTTTCCACCAGCGCACCGCCTAAGCAAGCCAGCTGACGCC < 41bp 0.737600925644158 0.492822476693438 0.06662214 0.02722624 prediction 0.475201851288317 Functional Loss - MAMLD1 ENSG00000013619 upstream Human protein_coding chrX:149531092 chrX:149531095 . . 0 24 hm5C_associated_SNPs_70529 0 0 0 0 2 MAMLD1 chrX:149531084 3'AG 149531084 Downstream 12bp
chrX 149531095 149531095 1 + G A rs183300201 149531092 + 149531072 149531112 41 TCTTTCCACCAGCGCACCGCCTAGGCAAGCCAGCTGACGCC TCTTTCCACCAGCGCACCGCCTAAGCAAGCCAGCTGACGCC < 41bp 0.737600925644158 0.492822476693438 0.06662214 0.02722624 prediction 0.475201851288317 Functional Loss - MAMLD1 ENSG00000013619 upstream Human protein_coding chrX:149531092 chrX:149531095 . . 0 24 hm5C_associated_SNPs_70529 0 0 0 0 2 MAMLD1 chrX:149531153 5'GT 149531153 Upstream 59bp
chr8 145616218 145616218 1 + G A rs143148314 145616215 + 145616195 145616235 41 CCGAGTATACCCGGACCCTGCGCGTGCTAGAGGACAGGGCC CCGAGTATACCCGGACCCTGCGCATGCTAGAGGACAGGGCC < 41bp 0.760300510522165 0.522700129211741 0.18713218 0.07968548 prediction 0.475200762620847 Functional Loss - ADCK5 ENSG00000173137 CDS Human protein_coding chr8:145616215 chr8:145616218 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_70530 0 0 0 0 1 ADCK5 chr8:145616256 5'GT 145616256 Upstream 39bp
chr17 2923886 2923886 1 + G A UCEC 2923883 + 2923863 2923903 41 AGGCCAGGGCGACAGCCGGGCACGATGGTAACTGTTGGGAA AGGCCAGGGCGACAGCCGGGCACAATGGTAACTGTTGGGAA < 41bp 0.743901098985072 0.506304558628651 0.19564706 0.19659126 prediction 0.475193080712843 Functional Loss - RAP1GAP2 ENSG00000132359 CDS Human protein_coding chr17:2923883 chr17:2923886 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_70532 0 0 0 0 1 RAP1GAP2 chr17:2923889 5'GT 2923889 Upstream 4bp
chr9 80851454 80851454 1 + A T UCEC 80851450 + 80851430 80851470 41 GGGCGCCTCTGCTGAGCACCCTCAAGATCAATAAAGACCTG GGGCGCCTCTGCTGAGCACCCTCATGATCAATAAAGACCTG < 41bp 0.791227972831234 0.553634298138932 0.037612885 0.07623568 prediction 0.475187349384604 Functional Loss - CEP78 ENSG00000148019 CDS Human protein_coding chr9:80851450 chr9:80851454 nonsynonymous SNV 0.014 0 25 hm5C_associated_SNPs_70533 0 0 1 0 1 CEP78 chr9:80851519 5'GT 80851519 Upstream 66bp
chr11 1904749 1904749 1 + G A SKCM 1904746 + 1904726 1904766 41 CAGGCCCAGAGGACACTGTCCAGGACAACCTGGGGGCCGCA CAGGCCCAGAGGACACTGTCCAGAACAACCTGGGGGCCGCA < 41bp 0.766986260020124 0.529407787590899 0.64551955 0.30557874 prediction 0.475156944858449 Functional Loss - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1904746 chr11:1904749 nonsynonymous SNV 0.029 0 24 hm5C_associated_SNPs_70540 0 0 0 0 1 LSP1 chr11:1904790 5'GT 1904790 Upstream 42bp
chr8 47757702 47757702 1 + A C rs183012120 47757701 + 47757681 47757721 41 TCACTGGACAAGCACCCACCCAGGTGACGTGACCTTCCTGC TCACTGGACAAGCACCCACCCCGGTGACGTGACCTTCCTGC < 41bp 0.737778435010992 0.500202638501984 0.65549266 0.20105419 prediction 0.475151593018016 Functional Loss - LINC00293 ENSG00000253314 ncRNA_exonic Human lincRNA chr8:47757701 chr8:47757702 . . 0 22 hm5C_associated_SNPs_70542 0 0 0 0 1 LINC00293 chr8:47757703 5'GT 47757703 Upstream 2bp
chr5 1232907 1232907 1 + T C LUAD 1232906 + 1232886 1232926 41 TCCTTCCTGATCAGCCTGTACTACAACACCATCGTGGCGTG TCCTTCCTGATCAGCCTGTACCACAACACCATCGTGGCGTG < 41bp 0.737571156336877 0.476244488632565 0.7679912 0.10958612 prediction 0.475142312673753 Functional Loss - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1232906 chr5:1232907 nonsynonymous SNV 0.763 5 22 hm5C_associated_SNPs_70544 0 0 0 0 2 SLC6A18 chr5:1232866 3'AG 1232866 Downstream 42bp
chr5 1232907 1232907 1 + T C LUAD 1232906 + 1232886 1232926 41 TCCTTCCTGATCAGCCTGTACTACAACACCATCGTGGCGTG TCCTTCCTGATCAGCCTGTACCACAACACCATCGTGGCGTG < 41bp 0.737571156336877 0.476244488632565 0.7679912 0.10958612 prediction 0.475142312673753 Functional Loss - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1232906 chr5:1232907 nonsynonymous SNV 0.763 5 22 hm5C_associated_SNPs_70544 0 0 0 0 2 SLC6A18 chr5:1233003 5'GT 1233003 Upstream 97bp
chr12 93150129 93150129 1 + G T UCEC 93150127 + 93150107 93150147 41 GAAAACATCTTGTCACCAACCAGCAGACACCTTCTCTATGA GAAAACATCTTGTCACCAACCATCAGACACCTTCTCTATGA < 41bp 0.86121741936923 0.623649173413914 0.068495005 0.009934813 prediction 0.475136491910634 Functional Loss - PLEKHG7 ENSG00000187510 CDS Human protein_coding chr12:93150127 chr12:93150129 nonsynonymous SNV 0.970 0 23 hm5C_associated_SNPs_70545 0 0 0 0 1 PLEKHG7 chr12:93150167 5'GT 93150167 Upstream 39bp
chr17 40717008 40717008 1 + C T SKCM 40717006 + 40716986 40717026 41 GTCTGTGTTGTCCAGATATTCTCCATAAAGATGGCATCATC GTCTGTGTTGTCCAGATATTCTTCATAAAGATGGCATCATC < 41bp 0.858066656881243 0.620501891167929 0.9577632 0.034088284 prediction 0.475129531426627 Functional Loss - COASY ENSG00000068120 CDS Human protein_coding chr17:40717006 chr17:40717008 synonymous SNV . 0 23 hm5C_associated_SNPs_70547 0 0 1 0 2 COASY chr17:40717001 3'AG 40717001 Downstream 8bp
chr17 40717008 40717008 1 + C T SKCM 40717006 + 40716986 40717026 41 GTCTGTGTTGTCCAGATATTCTCCATAAAGATGGCATCATC GTCTGTGTTGTCCAGATATTCTTCATAAAGATGGCATCATC < 41bp 0.858066656881243 0.620501891167929 0.9577632 0.034088284 prediction 0.475129531426627 Functional Loss - COASY ENSG00000068120 CDS Human protein_coding chr17:40717006 chr17:40717008 synonymous SNV . 0 23 hm5C_associated_SNPs_70547 0 0 1 0 2 COASY chr17:40717065 5'GT 40717065 Upstream 58bp
chrX 153049512 153049512 1 + C T LUAD 153049510 + 153049490 153049530 41 GGGCGCCAGAGCAGGTCCCTCCCCAGCCTCTTCCTCCCCCG GGGCGCCAGAGCAGGTCCCTCCTCAGCCTCTTCCTCCCCCG < 41bp 0.737558894051986 0.473798756093147 0.18839338 0.23236573 prediction 0.475117788103972 Functional Loss - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153049510 chrX:153049512 nonsynonymous SNV 0.387 0 23 hm5C_associated_SNPs_70548 0 0 0 0 1 SRPK3 chrX:153049429 3'AG 153049429 Downstream 84bp
chr16 2550317 2550317 1 + G A UCEC 2550314 + 2550294 2550334 41 AGTGGGTGGTGATCAAGCACCCCGAGCTGACCAAGCCCCCA AGTGGGTGGTGATCAAGCACCCCAAGCTGACCAAGCCCCCA < 41bp 0.740127276315594 0.502571678467974 0.1989618 0.06744763 prediction 0.475111195695239 Functional Loss - TBC1D24 ENSG00000162065 CDS Human protein_coding chr16:2550314 chr16:2550317 nonsynonymous SNV 0.933 3 24 hm5C_associated_SNPs_70551 0 0 1 0 1 TBC1D24 chr16:2550269 3'AG 2550269 Downstream 49bp
chr2 132288322 132288322 1 + A C LUAD 132288318 + 132288298 132288338 41 AAGCGTGGGCGTCTTGCGGGCGGTAGCGCCGACACTGTGCG AAGCGTGGGCGTCTTGCGGGCGGTCGCGCCGACACTGTGCG < 41bp 0.737555106298034 0.338241572659411 0.6332702 0.4763403 prediction 0.475110212596068 Functional Loss - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132288318 chr2:132288322 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_70552 0 0 0 0 1 CCDC74A chr2:132288400 5'GT 132288400 Upstream 79bp
chr11 237093 237093 1 + G T LUAD 237090 + 237070 237110 41 CCTACAGCAGAGCCAGAACTCCGGGCCCGGGCAGCCCGCTG CCTACAGCAGAGCCAGAACTCCGTGCCCGGGCAGCCCGCTG < 41bp 0.922066128008686 0.6845115379549 0.9176291 0.893188 prediction 0.475109180107573 Functional Loss - PSMD13 ENSG00000185627 CDS Human protein_coding chr11:237090 chr11:237093 nonsynonymous SNV 0.930 1 24 hm5C_associated_SNPs_70553 0 0 1 0 1 PSMD13 chr11:237144 5'GT 237144 Upstream 52bp
chr14 20978688 20978688 1 + G T LUSC 20978685 + 20978665 20978705 41 TGCTGATGCTGCTGCTGGGCCTGGGGATGGGCCTGGGGTTG TGCTGATGCTGCTGCTGGGCCTGTGGATGGGCCTGGGGTTG < 41bp 0.922792561200317 0.685249265044765 0.35832852 0.14060178 prediction 0.475086592311104 Functional Loss - RNASE10 ENSG00000182545 CDS Human protein_coding chr14:20978685 chr14:20978688 nonsynonymous SNV 0.649 3 24 hm5C_associated_SNPs_70554 0 0 0 0 1 RNASE10 chr14:20978626 3'AG 20978626 Downstream 63bp
chr20 54972782 54972782 1 + C T UCEC 54972780 + 54972760 54972800 41 TATGACCATGTGGATGAAGTCACGTGCCTTGCTTTCCACCC TATGACCATGTGGATGAAGTCATGTGCCTTGCTTTCCACCC < 41bp 0.836598834011726 0.599055767233122 0.75166917 0.5269993 prediction 0.475086133557208 Functional Loss - CSTF1 ENSG00000101138 CDS Human protein_coding chr20:54972780 chr20:54972782 nonsynonymous SNV 0.850 4 23 hm5C_associated_SNPs_70555 0 0 1 0 1 CSTF1 chr20:54972700 3'AG 54972700 Downstream 83bp
chr19 13198832 13198832 1 + G A UCEC 13198829 + 13198809 13198849 41 GGTAGCGGCCAGGGCAAAGTCCCGGGGTCATTTTTGCTACC GGTAGCGGCCAGGGCAAAGTCCCAGGGTCATTTTTGCTACC < 41bp 0.737974627280696 0.500434470822662 0.7369981 0.19079182 prediction 0.475080312916068 Functional Loss - NFIX ENSG00000008441 CDS Human protein_coding chr19:13198829 chr19:13198832 synonymous SNV . 0 24 hm5C_associated_SNPs_70556 0 0 0 0 1 NFIX chr19:13198803 3'AG 13198803 Downstream 30bp
chrX 18797183 18797183 1 + G C LUSC 18797182 + 18797162 18797202 41 TTAATGGTGACTTTGTAGATCGAGGAAAGAATTCCATAGAG TTAATGGTGACTTTGTAGATCCAGGAAAGAATTCCATAGAG < 41bp 0.737538992533299 0.422148745795692 0.4837668 0.1920977 prediction 0.475077985066598 Functional Loss - PPEF1 ENSG00000086717 CDS Human protein_coding chrX:18797182 chrX:18797183 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_70557 0 0 0 0 1 PPEF1 chrX:18797128 3'AG 18797128 Downstream 56bp
chr12 56531130 56531130 1 + G A UCEC 56531127 + 56531107 56531147 41 GCCCCACCTCGACCCTGTCACACGACTCCTGATAGCCAGTT GCCCCACCTCGACCCTGTCACACAACTCCTGATAGCCAGTT < 41bp 0.755744198571818 0.51820976917155 0.35493195 0.32713154 prediction 0.475068858800535 Functional Loss - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56531127 chr12:56531130 synonymous SNV . 0 24 hm5C_associated_SNPs_70559 0 0 1 0 1 ESYT1 chr12:56531157 5'GT 56531157 Upstream 28bp
chr8 21959239 21959239 1 + C T STAD 21959237 + 21959217 21959257 41 AGTTCCAGGAGTGCAGCTCCCGCGTCGCCTCCTGGGGCTGG AGTTCCAGGAGTGCAGCTCCCGTGTCGCCTCCTGGGGCTGG < 41bp 0.737531305391986 0.47657913828506 0.3146761 0.27055764 prediction 0.475062610783971 Functional Loss - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21959237 chr8:21959239 synonymous SNV . 0 23 hm5C_associated_SNPs_70561 0 0 1 0 1 FAM160B2 chr8:21959219 3'AG 21959219 Downstream 21bp
chr8 21959240 21959240 1 + G A STAD 21959237 + 21959217 21959257 41 AGTTCCAGGAGTGCAGCTCCCGCGTCGCCTCCTGGGGCTGG AGTTCCAGGAGTGCAGCTCCCGCATCGCCTCCTGGGGCTGG < 41bp 0.737531305391986 0.491559665370811 0.3146761 0.25612316 prediction 0.475062610783971 Functional Loss - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21959237 chr8:21959240 nonsynonymous SNV 0.048 2 24 hm5C_associated_SNPs_70562 0 0 1 0 1 FAM160B2 chr8:21959219 3'AG 21959219 Downstream 22bp
chr9 99694065 99694065 1 + G A rs369723479 99694062 + 99694042 99694082 41 GGCACCTCCCTGTCTGTGTTCACGGCTCTGCCCTTTGCCAC GGCACCTCCCTGTCTGTGTTCACAGCTCTGCCCTTTGCCAC < 41bp 0.779470486107839 0.541940153186986 0.3069252 0.31197968 prediction 0.475060665841705 Functional Loss - NUTM2G ENSG00000188152 CDS Human protein_coding chr9:99694062 chr9:99694065 synonymous SNV . 0 24 hm5C_associated_SNPs_70563 0 0 0 0 1 NUTM2G chr9:99694004 3'AG 99694004 Downstream 62bp
chr11 85968606 85968606 1 + G T UCEC 85968603 + 85968583 85968623 41 CAATGAGCTGAAATTCCATCCAAGAGATCCAAATCTTCTCC CAATGAGCTGAAATTCCATCCAATAGATCCAAATCTTCTCC < 41bp 0.737529601507053 0.358726030953769 0.18017626 0.07197219 prediction 0.475059203014107 Functional Loss - EED ENSG00000074266 CDS Human protein_coding chr11:85968603 chr11:85968606 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_70564 0 0 1 3 1 EED chr11:85968638 5'GT 85968638 Upstream 33bp
chr16 46943763 46943763 1 + C T SKCM 46943761 + 46943741 46943781 41 GGGCGCTGAATGTGAATGAGCTCCGGCGGGCGGTGCAGGAG GGGCGCTGAATGTGAATGAGCTTCGGCGGGCGGTGCAGGAG < 41bp 0.737522560864495 0.446257666590079 0.39489803 0.41076672 prediction 0.475045121728991 Functional Loss - GPT2 ENSG00000166123 CDS Human protein_coding chr16:46943761 chr16:46943763 synonymous SNV . 0 23 hm5C_associated_SNPs_70568 0 0 1 0 1 GPT2 chr16:46943839 5'GT 46943839 Upstream 77bp
chr8 145608403 145608403 1 + G A rs546211953 145608400 + 145608380 145608420 41 GGGAGAAGAGGAGGATGCGGCTCGTGGTGGATGGCATGGGG GGGAGAAGAGGAGGATGCGGCTCATGGTGGATGGCATGGGG < 41bp 0.75058213919435 0.513062273815921 0.5776887 0.48437577 prediction 0.475039730756858 Functional Loss - ADCK5 ENSG00000173137 CDS Human protein_coding chr8:145608400 chr8:145608403 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_70570 0 0 1 0 1 ADCK5 chr8:145608431 5'GT 145608431 Upstream 29bp
chr19 19349100 19349100 1 + G T LUSC 19349097 + 19349077 19349117 41 ACCGCGGCTGGCATAAGTTCCAGGGCCACTGTTACCGCTAT ACCGCGGCTGGCATAAGTTCCAGTGCCACTGTTACCGCTAT < 41bp 0.737519149416246 0.328766091699619 0.9179784 0.7591634 prediction 0.475038298832491 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19349097 chr19:19349100 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_70571 0 0 0 0 1 NCAN chr19:19349062 3'AG 19349062 Downstream 39bp
chr8 75898242 75898242 1 + A T DLBC 75898238 + 75898218 75898258 41 TCATTATGAAGTGTACCGCGCGGGAGTGGCTCAGAGTAACC TCATTATGAAGTGTACCGCGCGGGTGTGGCTCAGAGTAACC < 41bp 0.871638095664213 0.634120120302024 0.78876686 0.73270553 prediction 0.475035950724379 Functional Loss - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75898238 chr8:75898242 nonsynonymous SNV 0.993 0 25 hm5C_associated_SNPs_70572 0 0 0 0 1 CRISPLD1 chr8:75898161 3'AG 75898161 Downstream 82bp
chr2 113674757 113674757 1 + A T SKCM 113674753 + 113674733 113674773 41 AGAAATTCAGCATTCATGACCAGGATCACAAAGTACTGGTC AGAAATTCAGCATTCATGACCAGGTTCACAAAGTACTGGTC < 41bp 0.73751547281418 0.435640947032852 0.65778697 0.8504884 prediction 0.47503094562836 Functional Loss - IL37 ENSG00000125571 CDS Human protein_coding chr2:113674753 chr2:113674757 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_70574 0 0 0 0 2 IL37 chr2:113674706 3'AG 113674706 Downstream 52bp
chr2 113674757 113674757 1 + A T SKCM 113674753 + 113674733 113674773 41 AGAAATTCAGCATTCATGACCAGGATCACAAAGTACTGGTC AGAAATTCAGCATTCATGACCAGGTTCACAAAGTACTGGTC < 41bp 0.73751547281418 0.435640947032852 0.65778697 0.8504884 prediction 0.47503094562836 Functional Loss - IL37 ENSG00000125571 CDS Human protein_coding chr2:113674753 chr2:113674757 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_70574 0 0 0 0 2 IL37 chr2:113674825 5'GT 113674825 Upstream 69bp
chr8 56863306 56863306 1 + T C STAD 56863305 + 56863285 56863325 41 TTTGGCACCAGGAAATAGCGCTGGAGCTTTCCTTATTAGAG TTTGGCACCAGGAAATAGCGCCGGAGCTTTCCTTATTAGAG < 41bp 0.749432022729826 0.511919863734277 0.2640639 0.86770993 prediction 0.475024317991099 Functional Loss - LYN ENSG00000254087 CDS Human protein_coding chr8:56863305 chr8:56863306 synonymous SNV . 0 22 hm5C_associated_SNPs_70577 0 0 1 0 2 LYN chr8:56863240 3'AG 56863240 Downstream 67bp
chr8 56863306 56863306 1 + T C STAD 56863305 + 56863285 56863325 41 TTTGGCACCAGGAAATAGCGCTGGAGCTTTCCTTATTAGAG TTTGGCACCAGGAAATAGCGCCGGAGCTTTCCTTATTAGAG < 41bp 0.749432022729826 0.511919863734277 0.2640639 0.86770993 prediction 0.475024317991099 Functional Loss - LYN ENSG00000254087 CDS Human protein_coding chr8:56863305 chr8:56863306 synonymous SNV . 0 22 hm5C_associated_SNPs_70577 0 0 1 0 2 LYN chr8:56863343 5'GT 56863343 Upstream 38bp
chr1 55182315 55182315 1 + G T UCEC 55182313 + 55182293 55182333 41 ATTTATGTCGAGAGCGCCATCAGAAATTGATCCCAGGGAGA ATTTATGTCGAGAGCGCCATCATAAATTGATCCCAGGGAGA < 41bp 0.737509174756834 0.391684187264238 0.37797147 0.06816515 prediction 0.475018349513668 Functional Loss - TTC4 ENSG00000243725;ENSG00000271723 CDS Human other chr1:55182313 chr1:55182315 stopgain 0.975 0 23 hm5C_associated_SNPs_70579 0 0 1 0 2 TTC4 chr1:55182273 3'AG 55182273 Downstream 43bp
chr1 55182315 55182315 1 + G T UCEC 55182313 + 55182293 55182333 41 ATTTATGTCGAGAGCGCCATCAGAAATTGATCCCAGGGAGA ATTTATGTCGAGAGCGCCATCATAAATTGATCCCAGGGAGA < 41bp 0.737509174756834 0.391684187264238 0.37797147 0.06816515 prediction 0.475018349513668 Functional Loss - TTC4 ENSG00000243725;ENSG00000271723 CDS Human other chr1:55182313 chr1:55182315 stopgain 0.975 0 23 hm5C_associated_SNPs_70579 0 0 1 0 2 TTC4 chr1:55182390 5'GT 55182390 Upstream 76bp
chr17 40723569 40723569 1 + T C STAD 40723568 + 40723548 40723588 41 TCTGCTGCCCTCGCCAGACCCTGCGGGAGATTGTGATTGGC TCTGCTGCCCTCGCCAGACCCCGCGGGAGATTGTGATTGGC < 41bp 0.750281256377624 0.512773595359964 0.32021534 0.4034626 prediction 0.475015322035319 Functional Loss - MLX ENSG00000108788 CDS Human protein_coding chr17:40723568 chr17:40723569 nonsynonymous SNV 0.455 5 22 hm5C_associated_SNPs_70580 0 0 1 0 1 MLX chr17:40723565 3'AG 40723565 Downstream 5bp
chr15 67473779 67473779 1 + C T CESC 67473777 + 67473757 67473797 41 GAATGCAGCAGTGGAGCTGACACGGAGACACATCGGTATGG GAATGCAGCAGTGGAGCTGACATGGAGACACATCGGTATGG < 41bp 0.809723619694715 0.572221246982606 0.74474996 0.5182241 prediction 0.475004745424218 Functional Loss - SMAD3 ENSG00000166949 CDS Human protein_coding chr15:67473777 chr15:67473779 nonsynonymous SNV 0.015 5 23 hm5C_associated_SNPs_70582 2 0 1 0 1 SMAD3 chr15:67473791 5'GT 67473791 Upstream 13bp
chr16 56871626 56871626 1 + C T COAD 56871624 + 56871604 56871644 41 AGGCTGAAGAACATGGCACTCTCCATTGCCGAACGGTAAGC AGGCTGAAGAACATGGCACTCTTCATTGCCGAACGGTAAGC < 41bp 0.859192960877845 0.621692845677893 0.9665406 0.81824636 prediction 0.475000230399905 Functional Loss - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56871624 chr16:56871626 nonsynonymous SNV 0.918 2 23 hm5C_associated_SNPs_70584 0 0 1 0 1 NUP93 chr16:56871638 5'GT 56871638 Upstream 13bp
chr19 49900970 49900970 1 + G A UCEC 49900967 + 49900947 49900987 41 TCGGAGGCGAAGACCCCAGACCCGAGCTGTACCTATCCTCA TCGGAGGCGAAGACCCCAGACCCAAGCTGTACCTATCCTCA < 41bp 0.756812735501735 0.519319874149187 0.30011857 0.16460556 prediction 0.474985722705096 Functional Loss - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49900967 chr19:49900970 nonsynonymous SNV 0.122 2 24 hm5C_associated_SNPs_70586 0 0 0 0 2 CCDC155 chr19:49900908 3'AG 49900908 Downstream 63bp
chr19 49900970 49900970 1 + G A UCEC 49900967 + 49900947 49900987 41 TCGGAGGCGAAGACCCCAGACCCGAGCTGTACCTATCCTCA TCGGAGGCGAAGACCCCAGACCCAAGCTGTACCTATCCTCA < 41bp 0.756812735501735 0.519319874149187 0.30011857 0.16460556 prediction 0.474985722705096 Functional Loss - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49900967 chr19:49900970 nonsynonymous SNV 0.122 2 24 hm5C_associated_SNPs_70586 0 0 0 0 2 CCDC155 chr19:49900974 5'GT 49900974 Upstream 5bp
chr12 111345221 111345221 1 + G A LUAD 111345218 + 111345198 111345238 41 AGAATCGGAGTAAGGAAGTGCGCGGAGACAGCCTGCCTGAG AGAATCGGAGTAAGGAAGTGCGCAGAGACAGCCTGCCTGAG < 41bp 0.757459536367391 0.519968333856371 0.7521863 0.4160279 prediction 0.47498240502204 Functional Loss - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111345218 chr12:111345221 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_70589 0 0 0 0 1 CCDC63 chr12:111345135 3'AG 111345135 Downstream 87bp
chr8 41363446 41363446 1 + C T UCEC 41363444 + 41363424 41363464 41 TGTCAGGTTCTGAAGAAAGTCTCCAAATACATTCAAGAGCA TGTCAGGTTCTGAAGAAAGTCTTCAAATACATTCAAGAGCA < 41bp 0.863472487640309 0.625986332911437 0.9655677 0.8098993 prediction 0.474972309457744 Functional Loss - GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41363444 chr8:41363446 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_70594 0 0 1 0 2 GOLGA7 chr8:41363430 3'AG 41363430 Downstream 17bp
chr8 41363446 41363446 1 + C T UCEC 41363444 + 41363424 41363464 41 TGTCAGGTTCTGAAGAAAGTCTCCAAATACATTCAAGAGCA TGTCAGGTTCTGAAGAAAGTCTTCAAATACATTCAAGAGCA < 41bp 0.863472487640309 0.625986332911437 0.9655677 0.8098993 prediction 0.474972309457744 Functional Loss - GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41363444 chr8:41363446 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_70594 0 0 1 0 2 GOLGA7 chr8:41363531 5'GT 41363531 Upstream 86bp
chr16 67912726 67912726 1 + G T SARC 67912724 + 67912704 67912744 41 TCAGCAGAATACCTGATTCTCAGCGATGTGCAACGGAAGGT TCAGCAGAATACCTGATTCTCATCGATGTGCAACGGAAGGT < 41bp 0.737480797660681 0.388459514434711 0.8327826 0.23133329 prediction 0.474961595321363 Functional Loss - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67912724 chr16:67912726 nonsynonymous SNV 0.985 3 23 hm5C_associated_SNPs_70595 0 0 1 0 2 EDC4 chr16:67912640 3'AG 67912640 Downstream 87bp
chr16 67912726 67912726 1 + G T SARC 67912724 + 67912704 67912744 41 TCAGCAGAATACCTGATTCTCAGCGATGTGCAACGGAAGGT TCAGCAGAATACCTGATTCTCATCGATGTGCAACGGAAGGT < 41bp 0.737480797660681 0.388459514434711 0.8327826 0.23133329 prediction 0.474961595321363 Functional Loss - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67912724 chr16:67912726 nonsynonymous SNV 0.985 3 23 hm5C_associated_SNPs_70595 0 0 1 0 2 EDC4 chr16:67912742 5'GT 67912742 Upstream 17bp
chr1 8403885 8403885 1 + G T BLCA 8403882 + 8403862 8403902 41 TGCTGAGCTGCCAGTACTTCCTGGCTCAGATTCTGGTCTCC TGCTGAGCTGCCAGTACTTCCTGTCTCAGATTCTGGTCTCC < 41bp 0.737479450517183 0.341174592608789 0.18573299 0.053302824 prediction 0.474958901034367 Functional Loss - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8403882 chr1:8403885 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_70596 0 0 0 0 1 SLC45A1 chr1:8403807 3'AG 8403807 Downstream 79bp
chr18 76829437 76829437 1 + G C rs116790577 76829436 + 76829416 76829456 41 GGACCAGATCCCGCTTTACCCGGTGCGTAGCGCAGCGGCGG GGACCAGATCCCGCTTTACCCCGTGCGTAGCGCAGCGGCGG < 41bp 0.737468308414279 0.44018062020173 0.8761467 0.3356827 prediction 0.474936616828557 Functional Loss - ATP9B ENSG00000166377 CDS Human protein_coding chr18:76829436 chr18:76829437 synonymous SNV . 0 22 hm5C_associated_SNPs_70598 0 0 1 0 1 ATP9B chr18:76829529 5'GT 76829529 Upstream 93bp
chr20 43355792 43355792 1 + G A LGG 43355789 + 43355769 43355809 41 GTCCCCTGCCCAGAATGGAGCACGGCCTGGGGACCCTGCTC GTCCCCTGCCCAGAATGGAGCACAGCCTGGGGACCCTGCTC < 41bp 0.757718135819596 0.520257498388694 0.26895624 0.04209298 prediction 0.474921274861803 Functional Loss - WISP2 ENSG00000064205 CDS Human protein_coding chr20:43355789 chr20:43355792 nonsynonymous SNV 0.814 1 24 hm5C_associated_SNPs_70601 0 0 0 0 1 WISP2 chr20:43355728 3'AG 43355728 Downstream 65bp
chr11 118886117 118886117 1 + C T rs10111 118886115 + 118886095 118886135 41 GCTGGCTGCCCTCTTTTGGCCGCGTCTGGAATAATGGACGC GCTGGCTGCCCTCTTTTGGCCGTGTCTGGAATAATGGACGC < 41bp 0.807136985181286 0.569682291691136 0.20931026 0.1423817 prediction 0.4749093869803 Functional Loss - CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118886115 chr11:118886117 synonymous SNV . 0 23 hm5C_associated_SNPs_70602 0 0 1 0 1 CCDC84 chr11:118886149 5'GT 118886149 Upstream 33bp
chr22 35719820 35719820 1 + G T LUSC 35719818 + 35719798 35719838 41 CTGTGGGCACTGACTCCAGCCAGCAAGAGGACTCTGGCCAG CTGTGGGCACTGACTCCAGCCATCAAGAGGACTCTGGCCAG < 41bp 0.737452957245097 0.404659807593105 0.23266274 0.1410605 prediction 0.474905914490193 Functional Loss - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35719818 chr22:35719820 nonsynonymous SNV 0.009 0 23 hm5C_associated_SNPs_70604 0 0 1 0 2 TOM1 chr22:35719761 3'AG 35719761 Downstream 60bp
chr22 35719820 35719820 1 + G T LUSC 35719818 + 35719798 35719838 41 CTGTGGGCACTGACTCCAGCCAGCAAGAGGACTCTGGCCAG CTGTGGGCACTGACTCCAGCCATCAAGAGGACTCTGGCCAG < 41bp 0.737452957245097 0.404659807593105 0.23266274 0.1410605 prediction 0.474905914490193 Functional Loss - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35719818 chr22:35719820 nonsynonymous SNV 0.009 0 23 hm5C_associated_SNPs_70604 0 0 1 0 2 TOM1 chr22:35719907 5'GT 35719907 Upstream 88bp
chr9 35606932 35606932 1 + G T SARC 35606930 + 35606910 35606950 41 CCCTGGACATTGCCCGAGGCCTGCGGTACCTGCACTCCAAA CCCTGGACATTGCCCGAGGCCTTCGGTACCTGCACTCCAAA < 41bp 0.73744980876202 0.395577393939806 0.84499454 0.48416218 prediction 0.474899617524041 Functional Loss - TESK1 ENSG00000107140 CDS Human protein_coding chr9:35606930 chr9:35606932 synonymous SNV . 0 23 hm5C_associated_SNPs_70606 0 0 1 0 2 TESK1 chr9:35606834 3'AG 35606834 Downstream 99bp
chr9 35606932 35606932 1 + G T SARC 35606930 + 35606910 35606950 41 CCCTGGACATTGCCCGAGGCCTGCGGTACCTGCACTCCAAA CCCTGGACATTGCCCGAGGCCTTCGGTACCTGCACTCCAAA < 41bp 0.73744980876202 0.395577393939806 0.84499454 0.48416218 prediction 0.474899617524041 Functional Loss - TESK1 ENSG00000107140 CDS Human protein_coding chr9:35606930 chr9:35606932 synonymous SNV . 0 23 hm5C_associated_SNPs_70606 0 0 1 0 2 TESK1 chr9:35606980 5'GT 35606980 Upstream 49bp
chr10 104309846 104309846 1 + G T HNSC 104309843 + 104309823 104309863 41 AGAGTTAATGCAGGGCTTGGCACGATACGTGTTCCAGTCAG AGAGTTAATGCAGGGCTTGGCACTATACGTGTTCCAGTCAG < 41bp 0.922939167311189 0.685490530973834 0.4765717 0.24030429 prediction 0.47489727267471 Functional Loss - SUFU ENSG00000107882 CDS Human protein_coding chr10:104309843 chr10:104309846 nonsynonymous SNV 0.928 5 24 hm5C_associated_SNPs_70608 0 0 1 0 1 SUFU chr10:104309863 5'GT 104309863 Upstream 18bp
chr15 97327470 97327470 1 + G A STAD 97327467 + 97327447 97327487 41 GGCCCAGGAGGCCTCAAGGGCCCGGTGTGGCCTGCAAAGGA GGCCCAGGAGGCCTCAAGGGCCCAGTGTGGCCTGCAAAGGA < 41bp 0.770760863060642 0.533312858986428 0.21838742 0.105649054 prediction 0.474896008148429 Functional Loss - SPATA8 ENSG00000185594 CDS Human protein_coding chr15:97327467 chr15:97327470 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_70609 0 0 0 0 2 SPATA8 chr15:97327383 3'AG 97327383 Downstream 88bp
chr15 97327470 97327470 1 + G A STAD 97327467 + 97327447 97327487 41 GGCCCAGGAGGCCTCAAGGGCCCGGTGTGGCCTGCAAAGGA GGCCCAGGAGGCCTCAAGGGCCCAGTGTGGCCTGCAAAGGA < 41bp 0.770760863060642 0.533312858986428 0.21838742 0.105649054 prediction 0.474896008148429 Functional Loss - SPATA8 ENSG00000185594 CDS Human protein_coding chr15:97327467 chr15:97327470 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_70609 0 0 0 0 2 SPATA8 chr15:97327489 5'GT 97327489 Upstream 20bp
chrX 70389148 70389148 1 + C T COAD 70389146 + 70389126 70389166 41 CAGGACACCAAGTTCATTCACACCAAGGCCAACCGCTTTGA CAGGACACCAAGTTCATTCACATCAAGGCCAACCGCTTTGA < 41bp 0.737446522900665 0.449438857126177 0.0349257 0.08354193 prediction 0.474893045801331 Functional Loss - NLGN3 ENSG00000196338 CDS Human protein_coding chrX:70389146 chrX:70389148 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_70611 0 0 0 0 1 NLGN3 chrX:70389104 3'AG 70389104 Downstream 45bp
chr2 234247353 234247353 1 + G A SKCM 234247350 + 234247330 234247370 41 AGGGCATAGACCGGACCGTCCTGGGAATCCTGGTGTCTTAC AGGGCATAGACCGGACCGTCCTGAGAATCCTGGTGTCTTAC < 41bp 0.778008363634268 0.540562318589941 0.19381243 0.080581784 prediction 0.474892090088654 Functional Loss - SAG ENSG00000130561 CDS Human protein_coding chr2:234247350 chr2:234247353 nonsynonymous SNV 0.984 4 24 hm5C_associated_SNPs_70612 0 0 0 0 1 SAG chr2:234247322 3'AG 234247322 Downstream 32bp
chr6 126342348 126342348 1 + C T UCEC 126342346 + 126342326 126342366 41 CTTGGCACCCTTGCCTGGAACTCGTTAGCAACTGCGAGCAG CTTGGCACCCTTGCCTGGAACTTGTTAGCAACTGCGAGCAG < 41bp 0.825045384944895 0.587603485786189 0.2420268 0.26219568 prediction 0.474883798317411 Functional Loss - TRMT11 ENSG00000066651 CDS Human protein_coding chr6:126342346 chr6:126342348 synonymous SNV . 0 23 hm5C_associated_SNPs_70613 0 0 1 0 3 TRMT11 chr6:126342306 3'AG 126342306 Downstream 43bp
chr6 126342348 126342348 1 + C T UCEC 126342346 + 126342326 126342366 41 CTTGGCACCCTTGCCTGGAACTCGTTAGCAACTGCGAGCAG CTTGGCACCCTTGCCTGGAACTTGTTAGCAACTGCGAGCAG < 41bp 0.825045384944895 0.587603485786189 0.2420268 0.26219568 prediction 0.474883798317411 Functional Loss - TRMT11 ENSG00000066651 CDS Human protein_coding chr6:126342346 chr6:126342348 synonymous SNV . 0 23 hm5C_associated_SNPs_70613 0 0 1 0 3 TRMT11 chr6:126342411 5'GT 126342411 Upstream 64bp
chr6 126342348 126342348 1 + C T UCEC 126342346 + 126342326 126342366 41 CTTGGCACCCTTGCCTGGAACTCGTTAGCAACTGCGAGCAG CTTGGCACCCTTGCCTGGAACTTGTTAGCAACTGCGAGCAG < 41bp 0.825045384944895 0.587603485786189 0.2420268 0.26219568 prediction 0.474883798317411 Functional Loss - TRMT11 ENSG00000066651 CDS Human protein_coding chr6:126342346 chr6:126342348 synonymous SNV . 0 23 hm5C_associated_SNPs_70613 0 0 1 0 3 TRMT11 chr6:126342426 5'GT 126342426 Upstream 79bp
chr7 99699386 99699386 1 + T C UCEC 99699385 + 99699365 99699405 41 TCCAAGGGGGACCCGCTCATCTACAAAGACTGTATCCTAGA TCCAAGGGGGACCCGCTCATCCACAAAGACTGTATCCTAGA < 41bp 0.745999847680729 0.508560527203609 0.93092763 0.022897005 prediction 0.474878640954242 Functional Loss - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99699385 chr7:99699386 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_70614 0 0 0 0 1 AP4M1 chr7:99699395 5'GT 99699395 Upstream 10bp
chr17 47589282 47589282 1 + G T UCEC 47589279 + 47589259 47589299 41 ACAGCTGCAAGCAGAACAAGCAAGGAGCCAACAGCCGGCCA ACAGCTGCAAGCAGAACAAGCAATGAGCCAACAGCCGGCCA < 41bp 0.737425453167958 0.330644101095087 0.924898 0.92238355 prediction 0.474850906335915 Functional Loss - NGFR ENSG00000064300 CDS Human protein_coding chr17:47589279 chr17:47589282 stopgain 1.000 0 24 hm5C_associated_SNPs_70616 0 0 0 0 1 NGFR chr17:47589254 3'AG 47589254 Downstream 29bp
chr2 128408366 128408366 1 + G A rs61738383 128408363 + 128408343 128408383 41 ATCACCAACTTCTCCCTGGCCACGGCAGAGCAATGTGGCCA ATCACCAACTTCTCCCTGGCCACAGCAGAGCAATGTGGCCA < 41bp 0.742979308291513 0.505562032298262 0.07376754 0.08707166 prediction 0.474834551986502 Functional Loss - GPR17 ENSG00000144230 CDS Human protein_coding chr2:128408363 chr2:128408366 synonymous SNV . 0 24 hm5C_associated_SNPs_70620 0 0 0 0 1 GPR17 chr2:128408290 3'AG 128408290 Downstream 77bp
chr20 36012632 36012632 1 + G A BLCA 36012629 + 36012609 36012649 41 TGGAGCCCGCCGAGAACGTGCACGGCGCTGGCGGGGGCGCT TGGAGCCCGCCGAGAACGTGCACAGCGCTGGCGGGGGCGCT < 41bp 0.762405596793398 0.524988387230873 0.3556283 0.22423092 prediction 0.474834419125051 Functional Loss - SRC ENSG00000197122 CDS Human protein_coding chr20:36012629 chr20:36012632 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_70621 0 0 1 0 1 SRC chr20:36012553 3'AG 36012553 Downstream 80bp
chr1 151139648 151139648 1 + A C COAD 151139644 + 151139624 151139664 41 AGCCGGGAAAGGAAAGAAAGCAGAATCCAAAACATCAGAAT AGCCGGGAAAGGAAAGAAAGCAGACTCCAAAACATCAGAAT < 41bp 0.737414943472675 0.321151569919762 0.23018834 0.15288445 prediction 0.47482988694535 Functional Loss - SCNM1;TNFAIP8L2-SCNM1 ENSG00000163156 CDS Human protein_coding chr1:151139644 chr1:151139648 nonsynonymous SNV 0.957 1 25 hm5C_associated_SNPs_70622 0 0 1 0 2 SCNM1;TNFAIP8L2-SCNM1 chr1:151139597 3'AG 151139597 Downstream 52bp
chr1 151139648 151139648 1 + A C COAD 151139644 + 151139624 151139664 41 AGCCGGGAAAGGAAAGAAAGCAGAATCCAAAACATCAGAAT AGCCGGGAAAGGAAAGAAAGCAGACTCCAAAACATCAGAAT < 41bp 0.737414943472675 0.321151569919762 0.23018834 0.15288445 prediction 0.47482988694535 Functional Loss - SCNM1;TNFAIP8L2-SCNM1 ENSG00000163156 CDS Human protein_coding chr1:151139644 chr1:151139648 nonsynonymous SNV 0.957 1 25 hm5C_associated_SNPs_70622 0 0 1 0 2 SCNM1;TNFAIP8L2-SCNM1 chr1:151139694 5'GT 151139694 Upstream 47bp
chr2 36691738 36691738 1 + A C ESCA 36691734 + 36691714 36691754 41 TGTGAGGTGGGATCCACTCCCCGCATAGTCTCTCGTGGCGA TGTGAGGTGGGATCCACTCCCCGCCTAGTCTCTCGTGGCGA < 41bp 0.737414021388903 0.319742628675525 0.105745465 0.028832823 prediction 0.474828042777807 Functional Loss - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36691734 chr2:36691738 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_70623 0 0 1 0 2 CRIM1 chr2:36691677 3'AG 36691677 Downstream 62bp
chr2 36691738 36691738 1 + A C ESCA 36691734 + 36691714 36691754 41 TGTGAGGTGGGATCCACTCCCCGCATAGTCTCTCGTGGCGA TGTGAGGTGGGATCCACTCCCCGCCTAGTCTCTCGTGGCGA < 41bp 0.737414021388903 0.319742628675525 0.105745465 0.028832823 prediction 0.474828042777807 Functional Loss - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36691734 chr2:36691738 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_70623 0 0 1 0 2 CRIM1 chr2:36691798 5'GT 36691798 Upstream 61bp
chr4 68424574 68424574 1 + A C SKCM 68424573 + 68424553 68424593 41 CAGCCCCTCGCAGGATCTTCCAGGAAAGGTTAAAGATTACT CAGCCCCTCGCAGGATCTTCCCGGAAAGGTTAAAGATTACT < 41bp 0.781186886739214 0.543775541058665 0.8628509 0.4462119 prediction 0.474822691361098 Functional Loss - STAP1 ENSG00000035720 CDS Human protein_coding chr4:68424573 chr4:68424574 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_70626 0 0 0 0 1 STAP1 chr4:68424647 5'GT 68424647 Upstream 74bp
chr8 38832599 38832599 1 + G A UCEC 38832596 + 38832576 38832616 41 AGGAATTACAACTTCATCGCCGCGGTGGTGGAGAAGGTGGC AGGAATTACAACTTCATCGCCGCAGTGGTGGAGAAGGTGGC < 41bp 0.760177623497539 0.522768681431698 0.2788415 0.16517323 prediction 0.474817884131681 Functional Loss - HTRA4 ENSG00000169495 CDS Human protein_coding chr8:38832596 chr8:38832599 synonymous SNV . 0 24 hm5C_associated_SNPs_70627 0 0 0 0 2 HTRA4 chr8:38832550 3'AG 38832550 Downstream 50bp
chr8 38832599 38832599 1 + G A UCEC 38832596 + 38832576 38832616 41 AGGAATTACAACTTCATCGCCGCGGTGGTGGAGAAGGTGGC AGGAATTACAACTTCATCGCCGCAGTGGTGGAGAAGGTGGC < 41bp 0.760177623497539 0.522768681431698 0.2788415 0.16517323 prediction 0.474817884131681 Functional Loss - HTRA4 ENSG00000169495 CDS Human protein_coding chr8:38832596 chr8:38832599 synonymous SNV . 0 24 hm5C_associated_SNPs_70627 0 0 0 0 2 HTRA4 chr8:38832649 5'GT 38832649 Upstream 51bp
chr12 9462598 9462598 1 + G A rs780855031 9462595 + 9462575 9462615 41 GTGCTGGGGTGGAAGCTGAGCGCGTGGTGGAGTTTTCCTGT GTGCTGGGGTGGAAGCTGAGCGCATGGTGGAGTTTTCCTGT < 41bp 0.749932654246396 0.51253150664364 0.40692547 0.4426939 prediction 0.474802295205512 Functional Loss - LOC642846 ENSG00000111788 ncRNA_exonic Human unprocessed_pseudogene chr12:9462595 chr12:9462598 . . 0 24 hm5C_associated_SNPs_70630 0 0 0 0 2 LOC642846 chr12:9462544 3'AG 9462544 Downstream 55bp
chr12 9462598 9462598 1 + G A rs780855031 9462595 + 9462575 9462615 41 GTGCTGGGGTGGAAGCTGAGCGCGTGGTGGAGTTTTCCTGT GTGCTGGGGTGGAAGCTGAGCGCATGGTGGAGTTTTCCTGT < 41bp 0.749932654246396 0.51253150664364 0.40692547 0.4426939 prediction 0.474802295205512 Functional Loss - LOC642846 ENSG00000111788 ncRNA_exonic Human unprocessed_pseudogene chr12:9462595 chr12:9462598 . . 0 24 hm5C_associated_SNPs_70630 0 0 0 0 2 LOC642846 chr12:9462616 5'GT 9462616 Upstream 19bp
chr16 30092622 30092622 1 + G A UCEC 30092619 + 30092599 30092639 41 AGCAACGTGCAGAGGGTGGACTCGCCAGTCACAGTGAGTAC AGCAACGTGCAGAGGGTGGACTCACCAGTCACAGTGAGTAC < 41bp 0.737400031475818 0.498604250996057 0.21172035 0.044093728 prediction 0.474800062951637 Functional Loss - PPP4C ENSG00000149923 CDS Human protein_coding chr16:30092619 chr16:30092622 synonymous SNV . 0 24 hm5C_associated_SNPs_70632 0 0 1 2 2 PPP4C chr16:30092580 3'AG 30092580 Downstream 43bp
chr16 30092622 30092622 1 + G A UCEC 30092619 + 30092599 30092639 41 AGCAACGTGCAGAGGGTGGACTCGCCAGTCACAGTGAGTAC AGCAACGTGCAGAGGGTGGACTCACCAGTCACAGTGAGTAC < 41bp 0.737400031475818 0.498604250996057 0.21172035 0.044093728 prediction 0.474800062951637 Functional Loss - PPP4C ENSG00000149923 CDS Human protein_coding chr16:30092619 chr16:30092622 synonymous SNV . 0 24 hm5C_associated_SNPs_70632 0 0 1 2 2 PPP4C chr16:30092631 5'GT 30092631 Upstream 10bp
chr12 6884475 6884475 1 + G T LUSC 6884472 + 6884452 6884492 41 AACTCCCTTGACAGTGTACGCTGGAGCAGGTTCCAGGGTGG AACTCCCTTGACAGTGTACGCTGTAGCAGGTTCCAGGGTGG < 41bp 0.927333812630981 0.689935618412826 0.6875076 0.29185003 prediction 0.474796388436311 Functional Loss - LAG3 ENSG00000089692 CDS Human protein_coding chr12:6884472 chr12:6884475 nonsynonymous SNV 0.047 1 24 hm5C_associated_SNPs_70633 0 0 0 0 1 LAG3 chr12:6884439 3'AG 6884439 Downstream 37bp
chr17 20135688 20135688 1 + G T PAAD 20135686 + 20135666 20135706 41 CTGGGGGATGTGCAGGGCCACGGCAGGGTGGTCACCAGCAG CTGGGGGATGTGCAGGGCCACGTCAGGGTGGTCACCAGCAG < 41bp 0.884722988530249 0.64732509296467 0.75422776 0.57580906 prediction 0.474795791131157 Functional Loss - SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135686 chr17:20135688 nonsynonymous SNV 0.977 1 23 hm5C_associated_SNPs_70634 0 0 1 0 2 SPECC1 chr17:20135718 5'GT 20135718 Upstream 31bp
chr17 20135688 20135688 1 + G T PAAD 20135686 + 20135666 20135706 41 CTGGGGGATGTGCAGGGCCACGGCAGGGTGGTCACCAGCAG CTGGGGGATGTGCAGGGCCACGTCAGGGTGGTCACCAGCAG < 41bp 0.884722988530249 0.64732509296467 0.75422776 0.57580906 prediction 0.474795791131157 Functional Loss - SPECC1 ENSG00000128487 CDS Human lincRNA chr17:20135686 chr17:20135688 nonsynonymous SNV 0.977 1 23 hm5C_associated_SNPs_70634 0 0 1 0 2 SPECC1 chr17:20135727 5'GT 20135727 Upstream 40bp
chrX 13707366 13707366 1 + G T rs571369454 13707363 + 13707343 13707383 41 CTGTCCTCATTGCGCCCAGACGGGCCGGCCCAGAGCTCCCG CTGTCCTCATTGCGCCCAGACGGTCCGGCCCAGAGCTCCCG < 41bp 0.73739087636607 0.381299224564 0.8098475 0.2714395 prediction 0.474781752732141 Functional Loss - RAB9A ENSG00000123595 UTR5 Human protein_coding chrX:13707363 chrX:13707366 . . 0 24 hm5C_associated_SNPs_70636 0 0 1 0 1 RAB9A chrX:13707407 5'GT 13707407 Upstream 42bp
chr10 90433490 90433490 1 + C T UCEC 90433488 + 90433468 90433508 41 TTTGACAGTAAGAACTTTAACACGGTTAGTATGCATTTCAA TTTGACAGTAAGAACTTTAACATGGTTAGTATGCATTTCAA < 41bp 0.78644903591106 0.549064943268723 0.1242314 0.21067506 prediction 0.474768185284673 Functional Loss - LIPF ENSG00000182333 CDS Human protein_coding chr10:90433488 chr10:90433490 nonsynonymous SNV 0.034 0 23 hm5C_associated_SNPs_70638 0 0 0 0 1 LIPF chr10:90433491 5'GT 90433491 Upstream 2bp
chr4 20599946 20599946 1 + C T GBM 20599944 + 20599924 20599964 41 AAGGGTGACAAAGACCATATCGCGGTAGAACTCTATCGGGG AAGGGTGACAAAGACCATATCGTGGTAGAACTCTATCGGGG < 41bp 0.80491934900611 0.567540334800621 0.48472825 0.80164206 prediction 0.474758028410978 Functional Loss - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20599944 chr4:20599946 nonsynonymous SNV 0.387 2 23 hm5C_associated_SNPs_70639 0 0 1 0 2 SLIT2 chr4:20599888 3'AG 20599888 Downstream 59bp
chr4 20599946 20599946 1 + C T GBM 20599944 + 20599924 20599964 41 AAGGGTGACAAAGACCATATCGCGGTAGAACTCTATCGGGG AAGGGTGACAAAGACCATATCGTGGTAGAACTCTATCGGGG < 41bp 0.80491934900611 0.567540334800621 0.48472825 0.80164206 prediction 0.474758028410978 Functional Loss - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20599944 chr4:20599946 nonsynonymous SNV 0.387 2 23 hm5C_associated_SNPs_70639 0 0 1 0 2 SLIT2 chr4:20600018 5'GT 20600018 Upstream 73bp
chr6 13597207 13597207 1 + T C COAD 13597206 + 13597186 13597226 41 TTACTTCAGTGCTCCAGAACCTGGAACTCAAGATGCCAGCA TTACTTCAGTGCTCCAGAACCCGGAACTCAAGATGCCAGCA < 41bp 0.765915490400266 0.528538925084472 0.8375852 0.8599442 prediction 0.474753130631588 Functional Loss - SIRT5 ENSG00000124523 CDS Human protein_coding chr6:13597206 chr6:13597207 synonymous SNV . 0 22 hm5C_associated_SNPs_70641 0 0 1 0 2 SIRT5 chr6:13597195 3'AG 13597195 Downstream 13bp
chr6 13597207 13597207 1 + T C COAD 13597206 + 13597186 13597226 41 TTACTTCAGTGCTCCAGAACCTGGAACTCAAGATGCCAGCA TTACTTCAGTGCTCCAGAACCCGGAACTCAAGATGCCAGCA < 41bp 0.765915490400266 0.528538925084472 0.8375852 0.8599442 prediction 0.474753130631588 Functional Loss - SIRT5 ENSG00000124523 CDS Human protein_coding chr6:13597206 chr6:13597207 synonymous SNV . 0 22 hm5C_associated_SNPs_70641 0 0 1 0 2 SIRT5 chr6:13597248 5'GT 13597248 Upstream 42bp
chr11 57509424 57509424 1 + G T UCEC 57509422 + 57509402 57509442 41 ACGCTGCTGCGCCCGGACGGCAGCAGTAAGTGGGGACCTGG ACGCTGCTGCGCCCGGACGGCATCAGTAAGTGGGGACCTGG < 41bp 0.737376202913165 0.389577521094594 0.39980114 0.1020942 prediction 0.47475240582633 Functional Loss - SELENOH ENSG00000211450 CDS Human protein_coding chr11:57509422 chr11:57509424 unknown 0.987 1 23 hm5C_associated_SNPs_70642 0 0 0 0 1 SELENOH chr11:57509426 5'GT 57509426 Upstream 3bp
chr19 41703808 41703808 1 + G T LUAD 41703806 + 41703786 41703826 41 TCCAGGCGGAGGCCCGGTGTCTGGTGGAGACATTCCAGGGG TCCAGGCGGAGGCCCGGTGTCTTGTGGAGACATTCCAGGGG < 41bp 0.899519295348991 0.66214965323896 0.88928306 0.64325243 prediction 0.474739284220063 Functional Loss - CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41703806 chr19:41703808 synonymous SNV . 0 23 hm5C_associated_SNPs_70644 0 0 1 0 1 CYP2S1 chr19:41703833 5'GT 41703833 Upstream 26bp
chr17 9605017 9605017 1 + G T COAD 9605015 + 9604995 9605035 41 CCTGCAAGGTGGGCATTACACAGGTGAGCCTTGCCTTGCCT CCTGCAAGGTGGGCATTACACATGTGAGCCTTGCCTTGCCT < 41bp 0.906420708081967 0.669052984660175 0.8983028 0.39137864 prediction 0.474735446843584 Functional Loss - USP43 ENSG00000154914 CDS Human protein_coding chr17:9605015 chr17:9605017 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_70645 0 0 0 0 1 USP43 chr17:9605017 5'GT 9605017 Upstream 1bp
chr19 35741237 35741237 1 + G T GBM 35741235 + 35741215 35741255 41 CAGCTCCTGCCAGGGCCATCCAGGTGACCGTGTCCAACCCC CAGCTCCTGCCAGGGCCATCCATGTGACCGTGTCCAACCCC < 41bp 0.737365009775245 0.373405155126175 0.92379117 0.5091785 prediction 0.47473001955049 Functional Loss - LSR ENSG00000105699 CDS Human protein_coding chr19:35741235 chr19:35741237 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_70648 0 0 1 0 2 LSR chr19:35741218 3'AG 35741218 Downstream 20bp
chr19 35741237 35741237 1 + G T GBM 35741235 + 35741215 35741255 41 CAGCTCCTGCCAGGGCCATCCAGGTGACCGTGTCCAACCCC CAGCTCCTGCCAGGGCCATCCATGTGACCGTGTCCAACCCC < 41bp 0.737365009775245 0.373405155126175 0.92379117 0.5091785 prediction 0.47473001955049 Functional Loss - LSR ENSG00000105699 CDS Human protein_coding chr19:35741235 chr19:35741237 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_70648 0 0 1 0 2 LSR chr19:35741228 3'AG 35741228 Downstream 10bp
chr20 372148 372148 1 + T C STAD 372147 + 372127 372167 41 TCCGCCAGATGGCCACCGCCCTGGCGCACTGTCACCAGCAC TCCGCCAGATGGCCACCGCCCCGGCGCACTGTCACCAGCAC < 41bp 0.765738051109626 0.528373872281471 0.18404904 0.5726119 prediction 0.474728357656309 Functional Loss - TRIB3 ENSG00000101255 CDS Human protein_coding chr20:372147 chr20:372148 nonsynonymous SNV 0.462 1 22 hm5C_associated_SNPs_70649 0 0 1 0 1 TRIB3 chr20:372223 5'GT 372223 Upstream 76bp
chr5 145439450 145439450 1 + T C COAD 145439449 + 145439429 145439469 41 ATGGATCCCTGCAGAGACCCCTCCAGTCCGGGATCCCCACT ATGGATCCCTGCAGAGACCCCCCCAGTCCGGGATCCCCACT < 41bp 0.805317580396528 0.567958475144474 0.9460186 0.082883716 prediction 0.474718210504109 Functional Loss - SH3RF2 ENSG00000156463 CDS Human protein_coding chr5:145439449 chr5:145439450 nonsynonymous SNV 0.219 0 22 hm5C_associated_SNPs_70651 0 0 0 0 1 SH3RF2 chr5:145439429 3'AG 145439429 Downstream 22bp
chr2 139322555 139322555 1 + G T LUAD 139322552 + 139322532 139322572 41 GGGTGTAAAGATGGGAAAAACTGGAACAGCAAGTAAGATGA GGGTGTAAAGATGGGAAAAACTGTAACAGCAAGTAAGATGA < 41bp 0.907123296979632 0.669768269971124 0.60917383 0.32162118 prediction 0.474710054017015 Functional Loss - SPOPL ENSG00000144228 CDS Human protein_coding chr2:139322552 chr2:139322555 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_70652 0 0 1 0 2 SPOPL chr2:139322510 3'AG 139322510 Downstream 46bp
chr2 139322555 139322555 1 + G T LUAD 139322552 + 139322532 139322572 41 GGGTGTAAAGATGGGAAAAACTGGAACAGCAAGTAAGATGA GGGTGTAAAGATGGGAAAAACTGTAACAGCAAGTAAGATGA < 41bp 0.907123296979632 0.669768269971124 0.60917383 0.32162118 prediction 0.474710054017015 Functional Loss - SPOPL ENSG00000144228 CDS Human protein_coding chr2:139322552 chr2:139322555 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_70652 0 0 1 0 2 SPOPL chr2:139322563 5'GT 139322563 Upstream 9bp
chr14 78374175 78374175 1 + G A HNSC 78374172 + 78374152 78374192 41 CGAATCCACTGGGACCTGTCCACGGAGCGGGTCCTCCTGAT CGAATCCACTGGGACCTGTCCACAGAGCGGGTCCTCCTGAT < 41bp 0.75123999043314 0.513885913428122 0.8870867 0.1329081 prediction 0.474708154010035 Functional Loss - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78374172 chr14:78374175 synonymous SNV . 0 24 hm5C_associated_SNPs_70653 0 0 1 0 2 ADCK1 chr14:78374146 3'AG 78374146 Downstream 30bp
chr14 78374175 78374175 1 + G A HNSC 78374172 + 78374152 78374192 41 CGAATCCACTGGGACCTGTCCACGGAGCGGGTCCTCCTGAT CGAATCCACTGGGACCTGTCCACAGAGCGGGTCCTCCTGAT < 41bp 0.75123999043314 0.513885913428122 0.8870867 0.1329081 prediction 0.474708154010035 Functional Loss - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78374172 chr14:78374175 synonymous SNV . 0 24 hm5C_associated_SNPs_70653 0 0 1 0 2 ADCK1 chr14:78374262 5'GT 78374262 Upstream 88bp
chrX 129480547 129480547 1 + C T UCEC 129480545 + 129480525 129480565 41 CCCTGTGGACCTTACCAAAACACGACTTCAGGTTCAAGGCC CCCTGTGGACCTTACCAAAACATGACTTCAGGTTCAAGGCC < 41bp 0.835912190057627 0.598563798949901 0.0986352 0.08701208 prediction 0.474696782215452 Functional Loss - SLC25A14 ENSG00000102078 CDS Human protein_coding chrX:129480545 chrX:129480547 stopgain 0.995 1 23 hm5C_associated_SNPs_70657 0 0 1 0 1 SLC25A14 chrX:129480518 3'AG 129480518 Downstream 30bp
chr16 66643345 66643345 1 + T C LUAD 66643344 + 66643324 66643364 41 CCCTCTCTCCCCAGGACTTCCTGCGCTGTGTCACCGCGGCC CCCTCTCTCCCCAGGACTTCCCGCGCTGTGTCACCGCGGCC < 41bp 0.778624275886717 0.541277085460656 0.15608329 0.28638995 prediction 0.474694380852121 Functional Loss - CMTM3 ENSG00000140931 CDS Human protein_coding chr16:66643344 chr16:66643345 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_70658 0 0 0 0 2 CMTM3 chr16:66643338 3'AG 66643338 Downstream 8bp
chr16 66643345 66643345 1 + T C LUAD 66643344 + 66643324 66643364 41 CCCTCTCTCCCCAGGACTTCCTGCGCTGTGTCACCGCGGCC CCCTCTCTCCCCAGGACTTCCCGCGCTGTGTCACCGCGGCC < 41bp 0.778624275886717 0.541277085460656 0.15608329 0.28638995 prediction 0.474694380852121 Functional Loss - CMTM3 ENSG00000140931 CDS Human protein_coding chr16:66643344 chr16:66643345 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_70658 0 0 0 0 2 CMTM3 chr16:66643433 5'GT 66643433 Upstream 89bp
chr7 98984375 98984375 1 + G T UCEC 98984372 + 98984352 98984392 41 AAGAGCGGTGCCAAATGGACCAAGGTGCACGAGCTCAAGGA AAGAGCGGTGCCAAATGGACCAATGTGCACGAGCTCAAGGA < 41bp 0.737346906067433 0.333761832054186 0.3731488 0.03918603 prediction 0.474693812134865 Functional Loss - ARPC1B ENSG00000130429 CDS Human other chr7:98984372 chr7:98984375 nonsynonymous SNV 0.673 1 24 hm5C_associated_SNPs_70660 0 0 1 2 2 ARPC1B chr7:98984308 3'AG 98984308 Downstream 68bp
chr7 98984375 98984375 1 + G T UCEC 98984372 + 98984352 98984392 41 AAGAGCGGTGCCAAATGGACCAAGGTGCACGAGCTCAAGGA AAGAGCGGTGCCAAATGGACCAATGTGCACGAGCTCAAGGA < 41bp 0.737346906067433 0.333761832054186 0.3731488 0.03918603 prediction 0.474693812134865 Functional Loss - ARPC1B ENSG00000130429 CDS Human protein_coding chr7:98984372 chr7:98984375 nonsynonymous SNV 0.673 1 24 hm5C_associated_SNPs_70660 0 0 1 2 2 ARPC1B chr7:98984412 5'GT 98984412 Upstream 38bp
chr14 96157122 96157122 1 + G A UCEC 96157119 + 96157099 96157139 41 GTGGCAGATGGCAGTGCATACCCGGGAGCTACTCTCCTCCG GTGGCAGATGGCAGTGCATACCCAGGAGCTACTCTCCTCCG < 41bp 0.771525796243071 0.534178917642098 0.8456913 0.09766042 prediction 0.474693757201945 Functional Loss - TCL1B ENSG00000213231 CDS Human protein_coding chr14:96157119 chr14:96157122 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_70661 0 0 0 0 1 TCL1B chr14:96157073 3'AG 96157073 Downstream 50bp
chr9 133493282 133493282 1 + G T UCEC 133493280 + 133493260 133493300 41 CTGGAGATGCATTTAAAGTACAGGTAGGAAAGTGCCATGGG CTGGAGATGCATTTAAAGTACATGTAGGAAAGTGCCATGGG < 41bp 0.737345928814444 0.390483588558239 0.40645024 0.2922169 prediction 0.474691857628888 Functional Loss - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133493280 chr9:133493282 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_70662 0 0 1 0 2 FUBP3 chr9:133493184 3'AG 133493184 Downstream 99bp
chr9 133493282 133493282 1 + G T UCEC 133493280 + 133493260 133493300 41 CTGGAGATGCATTTAAAGTACAGGTAGGAAAGTGCCATGGG CTGGAGATGCATTTAAAGTACATGTAGGAAAGTGCCATGGG < 41bp 0.737345928814444 0.390483588558239 0.40645024 0.2922169 prediction 0.474691857628888 Functional Loss - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133493280 chr9:133493282 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_70662 0 0 1 0 2 FUBP3 chr9:133493282 5'GT 133493282 Upstream 1bp
chr1 70899568 70899568 1 + G T LUAD 70899565 + 70899545 70899585 41 GCGTCAGTGTACAGGTTGTACAGGGATGGTCACCTTTTATA GCGTCAGTGTACAGGTTGTACAGTGATGGTCACCTTTTATA < 41bp 0.737338369190793 0.450701924417524 0.26982373 0.022790432 prediction 0.474676738381585 Functional Loss - CTH ENSG00000116761 CDS Human protein_coding chr1:70899565 chr1:70899568 nonsynonymous SNV 0.358 5 24 hm5C_associated_SNPs_70665 0 0 0 0 2 CTH chr1:70899511 3'AG 70899511 Downstream 58bp
chr1 70899568 70899568 1 + G T LUAD 70899565 + 70899545 70899585 41 GCGTCAGTGTACAGGTTGTACAGGGATGGTCACCTTTTATA GCGTCAGTGTACAGGTTGTACAGTGATGGTCACCTTTTATA < 41bp 0.737338369190793 0.450701924417524 0.26982373 0.022790432 prediction 0.474676738381585 Functional Loss - CTH ENSG00000116761 CDS Human protein_coding chr1:70899565 chr1:70899568 nonsynonymous SNV 0.358 5 24 hm5C_associated_SNPs_70665 0 0 0 0 2 CTH chr1:70899632 5'GT 70899632 Upstream 65bp
chr1 117634475 117634475 1 + C T LUSC 117634473 + 117634453 117634493 41 GGGTCTGAGGAGCCTAGACACTCGGAGGCAGCAGACTCACC GGGTCTGAGGAGCCTAGACACTTGGAGGCAGCAGACTCACC < 41bp 0.818365588375924 0.581032170265893 0.057745278 0.2654761 prediction 0.474666836220061 Functional Loss - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117634473 chr1:117634475 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_70668 0 0 1 0 2 TTF2 chr1:117634439 3'AG 117634439 Downstream 37bp
chr1 117634475 117634475 1 + C T LUSC 117634473 + 117634453 117634493 41 GGGTCTGAGGAGCCTAGACACTCGGAGGCAGCAGACTCACC GGGTCTGAGGAGCCTAGACACTTGGAGGCAGCAGACTCACC < 41bp 0.818365588375924 0.581032170265893 0.057745278 0.2654761 prediction 0.474666836220061 Functional Loss - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117634473 chr1:117634475 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_70668 0 0 1 0 2 TTF2 chr1:117634572 5'GT 117634572 Upstream 98bp
chr16 1741961 1741961 1 + G A UCEC 1741958 + 1741938 1741978 41 GTCTCCGGTCACTGCCACTTCACGCTTGGCACACCCAAACA GTCTCCGGTCACTGCCACTTCACACTTGGCACACCCAAACA < 41bp 0.759053534685122 0.521722215341147 0.049504757 0.028517067 prediction 0.474662638687948 Functional Loss - JPT2 ENSG00000206053 CDS Human protein_coding chr16:1741958 chr16:1741961 nonsynonymous SNV 0.112 1 24 hm5C_associated_SNPs_70670 0 0 1 0 1 JPT2 chr16:1741986 5'GT 1741986 Upstream 26bp
chr20 18462420 18462420 1 + C T LIHC 18462418 + 18462398 18462438 41 GTCAATCCAATCATCCCTCCCACAGGTTTGGTCCGGGCACC GTCAATCCAATCATCCCTCCCATAGGTTTGGTCCGGGCACC < 41bp 0.737327099575899 0.461091769997033 0.08713862 0.16118807 prediction 0.474654199151799 Functional Loss - POLR3F ENSG00000132664 CDS Human protein_coding chr20:18462418 chr20:18462420 nonsynonymous SNV 0.687 2 23 hm5C_associated_SNPs_70672 0 0 1 0 1 POLR3F chr20:18462454 5'GT 18462454 Upstream 35bp
chr2 27851864 27851864 1 - T G UCEC 27851868 - 27851848 27851888 41 CGCATGGGTAGAGAAACTTCCGCAATGTTCTGGGCTGCGAA CGCATGGGTAGAGAAACTTCCGCACTGTTCTGGGCTGCGAA < 41bp 0.73732374400858 0.342942631059392 0.1526292 0.106265426 prediction 0.47464748801716 Functional Loss - CCDC121;GPN1 ENSG00000259080 ncRNA_intronic Human processed_transcript chr2:27851868 chr2:27851864 . . 0 25 hm5C_associated_SNPs_70674 0 0 0 0 1 CCDC121 chr2:27851817 5'GT 27851817 Upstream 48bp
chr9 32552402 32552402 1 + A C rs199937352 32552398 + 32552378 32552418 41 ACTGTAAGGCCCGCAGCTCCCGCCAGCTCCCGCGGACTGCT ACTGTAAGGCCCGCAGCTCCCGCCCGCTCCCGCGGACTGCT < 41bp 0.926531619676359 0.689208748090102 0.3737465 0.13278824 prediction 0.474645743172513 Functional Loss - SMIM27 ENSG00000235453 ncRNA_exonic Human protein_coding chr9:32552398 chr9:32552402 . . 0 25 hm5C_associated_SNPs_70675 0 0 1 0 1 SMIM27 chr9:32552477 5'GT 32552477 Upstream 76bp
chr2 99170940 99170940 1 + C T STAD 99170938 + 99170918 99170958 41 CTTCCCTGCAGGTGGACTGGCACGAGGAGGAGTGGGTGAGT CTTCCCTGCAGGTGGACTGGCATGAGGAGGAGTGGGTGAGT < 41bp 0.822837940145251 0.585515438052307 0.8772558 0.9097295 prediction 0.474645004185888 Functional Loss - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99170938 chr2:99170940 synonymous SNV . 0 23 hm5C_associated_SNPs_70676 0 0 1 0 1 INPP4A chr2:99170952 5'GT 99170952 Upstream 13bp
chr10 99211881 99211881 1 + C T KIRC 99211879 + 99211859 99211899 41 CTGGTGATCGTGCTGACAGGCTCCATTGTAGCTATCGCCTA CTGGTGATCGTGCTGACAGGCTTCATTGTAGCTATCGCCTA < 41bp 0.852673726072457 0.615351767674144 0.9054359 0.10715255 prediction 0.474643916796627 Functional Loss - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99211879 chr10:99211881 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_70678 0 0 1 0 1 ZDHHC16 chr10:99211847 3'AG 99211847 Downstream 35bp
chr7 101091009 101091009 1 + C T UCEC 101091007 + 101090987 101091027 41 ACCTACAGAGTGTCCTACCGCACGGTGACGGTGCTGGAGTG ACCTACAGAGTGTCCTACCGCATGGTGACGGTGCTGGAGTG < 41bp 0.810841916906465 0.573523181184636 0.3448866 0.32186127 prediction 0.474637471443658 Functional Loss - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101091007 chr7:101091009 nonsynonymous SNV 0.652 2 23 hm5C_associated_SNPs_70679 0 0 1 0 2 COL26A1 chr7:101090965 3'AG 101090965 Downstream 45bp
chr7 101091009 101091009 1 + C T UCEC 101091007 + 101090987 101091027 41 ACCTACAGAGTGTCCTACCGCACGGTGACGGTGCTGGAGTG ACCTACAGAGTGTCCTACCGCATGGTGACGGTGCTGGAGTG < 41bp 0.810841916906465 0.573523181184636 0.3448866 0.32186127 prediction 0.474637471443658 Functional Loss - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101091007 chr7:101091009 nonsynonymous SNV 0.652 2 23 hm5C_associated_SNPs_70679 0 0 1 0 2 COL26A1 chr7:101090971 3'AG 101090971 Downstream 39bp
chr3 158539834 158539834 1 + G T UCEC 158539832 + 158539812 158539852 41 TGGGCTCCTGGTGGATAAAACAGGGAAGAACATCATCTGGG TGGGCTCCTGGTGGATAAAACATGGAAGAACATCATCTGGG < 41bp 0.896575244982151 0.659256605868147 0.9030546 0.504073 prediction 0.474637278228009 Functional Loss - MFSD1 ENSG00000118855 CDS Human protein_coding chr3:158539832 chr3:158539834 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_70680 0 0 1 0 1 MFSD1 chr3:158539929 5'GT 158539929 Upstream 96bp
chr15 72953682 72953682 1 + C T UCEC 72953680 + 72953660 72953700 41 AGCGGGCGCTGCTGAACGCACACGTGACACAGGTGAGGCTT AGCGGGCGCTGCTGAACGCACATGTGACACAGGTGAGGCTT < 41bp 0.79784144442612 0.560525133790087 0.11912048 0.085107714 prediction 0.474632621272068 Functional Loss - GOLGA6B ENSG00000215186 CDS Human protein_coding chr15:72953680 chr15:72953682 synonymous SNV . 0 23 hm5C_associated_SNPs_70682 0 0 0 0 2 GOLGA6B chr15:72953605 3'AG 72953605 Downstream 78bp
chr15 72953682 72953682 1 + C T UCEC 72953680 + 72953660 72953700 41 AGCGGGCGCTGCTGAACGCACACGTGACACAGGTGAGGCTT AGCGGGCGCTGCTGAACGCACATGTGACACAGGTGAGGCTT < 41bp 0.79784144442612 0.560525133790087 0.11912048 0.085107714 prediction 0.474632621272068 Functional Loss - GOLGA6B ENSG00000215186 CDS Human protein_coding chr15:72953680 chr15:72953682 synonymous SNV . 0 23 hm5C_associated_SNPs_70682 0 0 0 0 2 GOLGA6B chr15:72953691 5'GT 72953691 Upstream 10bp
chr2 128389280 128389280 1 + A T LUSC 128389276 + 128389256 128389296 41 CCCTGCAGCACCCGGCCCTCCAGGACGAGGTCTACTGCCAG CCCTGCAGCACCCGGCCCTCCAGGTCGAGGTCTACTGCCAG < 41bp 0.73731092839882 0.423469405962004 0.33016866 0.59209585 prediction 0.47462185679764 Functional Loss - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128389276 chr2:128389280 nonsynonymous SNV 0.883 5 25 hm5C_associated_SNPs_70684 0 0 0 0 1 MYO7B chr2:128389328 5'GT 128389328 Upstream 49bp
chr17 31322436 31322436 1 + C T PAAD 31322434 + 31322414 31322454 41 TCCCCTTTCCCAGGGGTGCACTCAAGCCCTGTTTCTTCTCC TCCCCTTTCCCAGGGGTGCACTTAAGCCCTGTTTCTTCTCC < 41bp 0.737306285249358 0.480415846374972 0.38586673 0.28569913 prediction 0.474612570498716 Functional Loss - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31322434 chr17:31322436 nonsynonymous SNV 0.010 1 23 hm5C_associated_SNPs_70685 0 0 0 1 1 SPACA3 chr17:31322427 3'AG 31322427 Downstream 10bp
chr19 3293399 3293399 1 + C T SKCM 3293397 + 3293377 3293417 41 TCCAGATCGGCATGAAGAGGCTCAAAGTCCAGCTGAAGCGG TCCAGATCGGCATGAAGAGGCTTAAAGTCCAGCTGAAGCGG < 41bp 0.737302267343379 0.463902943871604 0.69370854 0.23581201 prediction 0.474604534686757 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3293397 chr19:3293399 synonymous SNV . 0 23 hm5C_associated_SNPs_70686 0 0 0 2 2 CELF5 chr19:3293317 3'AG 3293317 Downstream 83bp
chr19 3293399 3293399 1 + C T SKCM 3293397 + 3293377 3293417 41 TCCAGATCGGCATGAAGAGGCTCAAAGTCCAGCTGAAGCGG TCCAGATCGGCATGAAGAGGCTTAAAGTCCAGCTGAAGCGG < 41bp 0.737302267343379 0.463902943871604 0.69370854 0.23581201 prediction 0.474604534686757 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3293397 chr19:3293399 synonymous SNV . 0 23 hm5C_associated_SNPs_70686 0 0 0 2 2 CELF5 chr19:3293484 5'GT 3293484 Upstream 86bp
chr12 122398617 122398617 1 + G T UCEC 122398614 + 122398594 122398634 41 GTCTCCTGTTTGGGGTTTACCTGGACAGCAATGAGCCTAGA GTCTCCTGTTTGGGGTTTACCTGTACAGCAATGAGCCTAGA < 41bp 0.917710102194239 0.680409783733605 0.22211048 0.067154616 prediction 0.474600636921269 Functional Loss - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122398614 chr12:122398617 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_70687 0 0 1 0 1 WDR66 chr12:122398664 5'GT 122398664 Upstream 48bp
chr1 210012330 210012330 1 + G T LUAD 210012328 + 210012308 210012348 41 ATCAGCCTCCTCGAGGGTGACAGCAAGAAGAAAATCATTGT ATCAGCCTCCTCGAGGGTGACATCAAGAAGAAAATCATTGT < 41bp 0.737295184555554 0.394490933862533 0.5515227 0.17438641 prediction 0.474590369111108 Functional Loss - DIEXF ENSG00000117597 CDS Human protein_coding chr1:210012328 chr1:210012330 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_70691 0 0 1 0 1 DIEXF chr1:210012254 3'AG 210012254 Downstream 77bp
chr1 156838432 156838432 1 + C T rs55909005 156838430 + 156838410 156838450 41 ACAGAGCTGGAGCAGTCAGCCACGGTGATGGTGAGAAGACC ACAGAGCTGGAGCAGTCAGCCATGGTGATGGTGAGAAGACC < 41bp 0.772725686733337 0.535431263807032 0.5936566 0.37014484 prediction 0.47458884585261 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156838430 chr1:156838432 nonsynonymous SNV 0.856 2 23 hm5C_associated_SNPs_70693 3 0 1 0 1 NTRK1 chr1:156838439 5'GT 156838439 Upstream 8bp
chr12 132237743 132237743 1 + G A BRCA 132237740 + 132237720 132237760 41 CTGCCTGGCGCCGCCCCCTCCCGGAATCGACGTGACTACTT CTGCCTGGCGCCGCCCCCTCCCGAAATCGACGTGACTACTT < 41bp 0.751384536817922 0.51409120891423 0.7793059 0.250187 prediction 0.474586655807385 Functional Loss - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132237740 chr12:132237743 nonsynonymous SNV 0.075 4 24 hm5C_associated_SNPs_70695 0 0 1 0 1 SFSWAP chr12:132237668 3'AG 132237668 Downstream 76bp
chr1 36056346 36056346 1 + A C LIHC 36056342 + 36056322 36056362 41 AGCACGCTGACCCGGGGGAGCTGCACAGCCGCAAGAGCATG AGCACGCTGACCCGGGGGAGCTGCCCAGCCGCAAGAGCATG < 41bp 0.737286649442736 0.3167665331176 0.2644921 0.22576377 prediction 0.474573298885472 Functional Loss - TFAP2E ENSG00000116819 CDS Human protein_coding chr1:36056342 chr1:36056346 nonsynonymous SNV 0.982 2 25 hm5C_associated_SNPs_70701 0 0 0 0 1 TFAP2E chr1:36056376 5'GT 36056376 Upstream 31bp
chr11 1857719 1857719 1 + C T SKCM 1857717 + 1857697 1857737 41 CTTTTCAACTTCAAGCGCTTCTCGGGGCATGAGCCCCTGGG CTTTTCAACTTCAAGCGCTTCTTGGGGCATGAGCCCCTGGG < 41bp 0.778792453789193 0.541505910677589 0.20436007 0.09581891 prediction 0.474573086223208 Functional Loss - SYT8 ENSG00000149043 CDS Human protein_coding chr11:1857717 chr11:1857719 nonsynonymous SNV 0.011 1 23 hm5C_associated_SNPs_70702 0 0 0 0 1 SYT8 chr11:1857655 3'AG 1857655 Downstream 65bp
chr19 4311972 4311972 1 + G T UCEC 4311969 + 4311949 4311989 41 GAGTACCGGCGGACCAACTTCGAGGGCCCGCCCCGCCTCAA GAGTACCGGCGGACCAACTTCGATGGCCCGCCCCGCCTCAA < 41bp 0.924453652356279 0.687175525437225 0.9055631 0.4031053 prediction 0.474556253838108 Functional Loss - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4311969 chr19:4311972 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_70707 0 0 0 0 1 FSD1 chr19:4312048 5'GT 4312048 Upstream 77bp
chr10 118359629 118359629 1 + C T LGG 118359627 + 118359607 118359647 41 ACTTGGAAAGCATCCTCAATCCCGATGGGTTTGCTGCATAT ACTTGGAAAGCATCCTCAATCCTGATGGGTTTGCTGCATAT < 41bp 0.830878904152157 0.593602085418555 0.51038885 0.55080533 prediction 0.474553637467204 Functional Loss - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118359627 chr10:118359629 synonymous SNV . 0 23 hm5C_associated_SNPs_70708 0 0 0 0 2 PNLIPRP1 chr10:118359559 3'AG 118359559 Downstream 71bp
chr10 118359629 118359629 1 + C T LGG 118359627 + 118359607 118359647 41 ACTTGGAAAGCATCCTCAATCCCGATGGGTTTGCTGCATAT ACTTGGAAAGCATCCTCAATCCTGATGGGTTTGCTGCATAT < 41bp 0.830878904152157 0.593602085418555 0.51038885 0.55080533 prediction 0.474553637467204 Functional Loss - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118359627 chr10:118359629 synonymous SNV . 0 23 hm5C_associated_SNPs_70708 0 0 0 0 2 PNLIPRP1 chr10:118359677 5'GT 118359677 Upstream 49bp
chr10 89692973 89692973 1 + G T KIRC 89692970 + 89692950 89692990 41 TTTTAAAGGCACAAGAGGCCCTAGATTTCTATGGGGAAGTA TTTTAAAGGCACAAGAGGCCCTATATTTCTATGGGGAAGTA < 41bp 0.737275873922376 0.375433293451555 0.14861795 0.21604553 prediction 0.474551747844753 Functional Loss - PTEN ENSG00000171862 CDS Human protein_coding chr10:89692970 chr10:89692973 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_70709 0 0 0 0 1 PTEN chr10:89693008 5'GT 89693008 Upstream 36bp
chr10 89692971 89692971 1 + T C UCEC 89692970 + 89692950 89692990 41 TTTTAAAGGCACAAGAGGCCCTAGATTTCTATGGGGAAGTA TTTTAAAGGCACAAGAGGCCCCAGATTTCTATGGGGAAGTA < 41bp 0.737275873922376 0.491985009456142 0.14861795 0.2722316 prediction 0.474551747844753 Functional Loss - PTEN ENSG00000171862 CDS Human protein_coding chr10:89692970 chr10:89692971 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_70710 0 0 0 0 1 PTEN chr10:89693008 5'GT 89693008 Upstream 38bp
chr1 165620324 165620324 1 + C T CESC 165620322 + 165620302 165620342 41 ATTCAGCGAGCCCACCAGAACACGTGAGTGTCGGCCCTGCC ATTCAGCGAGCCCACCAGAACATGTGAGTGTCGGCCCTGCC < 41bp 0.810811189697203 0.573539064822275 0.5748525 0.365093 prediction 0.474544249749856 Functional Loss - MGST3 ENSG00000143198 CDS Human protein_coding chr1:165620322 chr1:165620324 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_70713 0 0 1 0 2 MGST3 chr1:165620251 3'AG 165620251 Downstream 74bp
chr1 165620324 165620324 1 + C T CESC 165620322 + 165620302 165620342 41 ATTCAGCGAGCCCACCAGAACACGTGAGTGTCGGCCCTGCC ATTCAGCGAGCCCACCAGAACATGTGAGTGTCGGCCCTGCC < 41bp 0.810811189697203 0.573539064822275 0.5748525 0.365093 prediction 0.474544249749856 Functional Loss - MGST3 ENSG00000143198 CDS Human protein_coding chr1:165620322 chr1:165620324 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_70713 0 0 1 0 2 MGST3 chr1:165620324 5'GT 165620324 Upstream 1bp
chr12 6646556 6646556 1 + G A OV 6646553 + 6646533 6646573 41 TTTGGTATCGTGGAAGGACTCATGGTATGAGAGCTGGGGAA TTTGGTATCGTGGAAGGACTCATAGTATGAGAGCTGGGGAA < 41bp 0.755268925587808 0.51800647800541 0.55893725 0.19700518 prediction 0.474524895164796 Functional Loss - GAPDH ENSG00000111640 CDS Human protein_coding chr12:6646553 chr12:6646556 nonsynonymous SNV 0.956 2 24 hm5C_associated_SNPs_70714 0 0 1 0 2 GAPDH chr12:6646475 3'AG 6646475 Downstream 82bp
chr12 6646556 6646556 1 + G A OV 6646553 + 6646533 6646573 41 TTTGGTATCGTGGAAGGACTCATGGTATGAGAGCTGGGGAA TTTGGTATCGTGGAAGGACTCATAGTATGAGAGCTGGGGAA < 41bp 0.755268925587808 0.51800647800541 0.55893725 0.19700518 prediction 0.474524895164796 Functional Loss - GAPDH ENSG00000111640 CDS Human protein_coding chr12:6646553 chr12:6646556 nonsynonymous SNV 0.956 2 24 hm5C_associated_SNPs_70714 0 0 1 0 2 GAPDH chr12:6646556 5'GT 6646556 Upstream 1bp
chr22 38211274 38211274 1 + G T LUAD 38211271 + 38211251 38211291 41 AATGCCATGCCACTGGCTTCCTGGGGCCCACAGGACGGTGG AATGCCATGCCACTGGCTTCCTGTGGCCCACAGGACGGTGG < 41bp 0.923251502893095 0.685990056090973 0.30738348 0.13865754 prediction 0.474522893604246 Functional Loss - GCAT ENSG00000100116 CDS Human protein_coding chr22:38211271 chr22:38211274 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_70715 0 0 0 0 1 GCAT chr22:38211287 5'GT 38211287 Upstream 14bp
chr20 35833196 35833196 1 + C T UCEC 35833194 + 35833174 35833214 41 TTGTTGCTCGCCTGGATGAACTCGGGGGCGTGTATCTCCAG TTGTTGCTCGCCTGGATGAACTTGGGGGCGTGTATCTCCAG < 41bp 0.842939309554703 0.605682018034695 0.52136993 0.62498 prediction 0.474514583040016 Functional Loss - RPN2 ENSG00000118705 CDS Human protein_coding chr20:35833194 chr20:35833196 synonymous SNV . 0 23 hm5C_associated_SNPs_70719 0 0 1 0 1 RPN2 chr20:35833170 3'AG 35833170 Downstream 27bp
chrX 18664154 18664154 1 + G C BRCA 18664150 + 18664130 18664170 41 GTGGATGTGATGGCAGAAGACAGAGACACCATTCTGGACCC GTGGATGTGATGGCAGAAGACAGACACACCATTCTGGACCC < 41bp 0.737255337445886 0.431644282019721 0.7146159 0.20449689 prediction 0.474510674891771 Functional Loss - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18664150 chrX:18664154 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_70720 0 0 0 0 2 CDKL5 chrX:18664127 3'AG 18664127 Downstream 28bp
chrX 18664154 18664154 1 + G C BRCA 18664150 + 18664130 18664170 41 GTGGATGTGATGGCAGAAGACAGAGACACCATTCTGGACCC GTGGATGTGATGGCAGAAGACAGACACACCATTCTGGACCC < 41bp 0.737255337445886 0.431644282019721 0.7146159 0.20449689 prediction 0.474510674891771 Functional Loss - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18664150 chrX:18664154 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_70720 0 0 0 0 2 CDKL5 chrX:18664210 5'GT 18664210 Upstream 57bp
chr1 231349611 231349611 1 + T C UCEC 231349610 + 231349590 231349630 41 CCGTGGGCGTGCTGCTGGACCTGAATAAGCACACTCTCACC CCGTGGGCGTGCTGCTGGACCCGAATAAGCACACTCTCACC < 41bp 0.760754331245863 0.523499342769659 0.15344998 0.092077255 prediction 0.474509976952407 Functional Loss - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231349610 chr1:231349611 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_70721 0 0 0 0 1 TRIM67 chr1:231349561 3'AG 231349561 Downstream 51bp
chr3 32927506 32927506 1 + G A COAD 32927503 + 32927483 32927523 41 GTGCAGTCGGAGGTCAAAGCCGTGACGGCGAGGCATAAGAA GTGCAGTCGGAGGTCAAAGCCGTAACGGCGAGGCATAAGAA < 41bp 0.73725195746847 0.494157448992598 0.35743144 0.33756527 prediction 0.47450391493694 Functional Loss - TRIM71 ENSG00000206557 CDS Human protein_coding chr3:32927503 chr3:32927506 synonymous SNV . 0 24 hm5C_associated_SNPs_70723 0 0 1 0 2 TRIM71 chr3:32927426 3'AG 32927426 Downstream 81bp
chr3 32927506 32927506 1 + G A COAD 32927503 + 32927483 32927523 41 GTGCAGTCGGAGGTCAAAGCCGTGACGGCGAGGCATAAGAA GTGCAGTCGGAGGTCAAAGCCGTAACGGCGAGGCATAAGAA < 41bp 0.73725195746847 0.494157448992598 0.35743144 0.33756527 prediction 0.47450391493694 Functional Loss - TRIM71 ENSG00000206557 CDS Human protein_coding chr3:32927503 chr3:32927506 synonymous SNV . 0 24 hm5C_associated_SNPs_70723 0 0 1 0 2 TRIM71 chr3:32927560 5'GT 32927560 Upstream 55bp
chr18 29038458 29038458 1 + A T COAD 29038454 + 29038434 29038474 41 GAAAATCACCTACCGAATCTCTGGAGTGGGAATCGATCAGC GAAAATCACCTACCGAATCTCTGGTGTGGGAATCGATCAGC < 41bp 0.883852084832468 0.646600748643339 0.69303834 0.27718353 prediction 0.47450267237826 Functional Loss - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29038454 chr18:29038458 synonymous SNV . 0 25 hm5C_associated_SNPs_70724 0 0 0 0 1 DSG3 chr18:29038408 3'AG 29038408 Downstream 51bp
chr1 43783012 43783012 1 + G T STAD 43783010 + 43782990 43783030 41 CTCATCGGGGAGGGGAACTTCGGCCAGGTCATCCGGGCCAT CTCATCGGGGAGGGGAACTTCGTCCAGGTCATCCGGGCCAT < 41bp 0.737248157659751 0.403995072425299 0.8525009 0.6534823 prediction 0.474496315319502 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43783010 chr1:43783012 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_70725 0 0 0 0 1 TIE1 chr1:43783080 5'GT 43783080 Upstream 69bp
chr9 77745531 77745531 1 + G T GBM 77745529 + 77745509 77745549 41 TGGAAAGGCACCTCCAAAGGCAGGACTGGACTAATTCCAAG TGGAAAGGCACCTCCAAAGGCATGACTGGACTAATTCCAAG < 41bp 0.894593413535688 0.657350026331259 0.15232718 0.053881884 prediction 0.474486774408858 Functional Loss - OSTF1 ENSG00000134996 CDS Human protein_coding chr9:77745529 chr9:77745531 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_70728 0 0 1 0 2 OSTF1 chr9:77745494 3'AG 77745494 Downstream 38bp
chr9 77745531 77745531 1 + G T GBM 77745529 + 77745509 77745549 41 TGGAAAGGCACCTCCAAAGGCAGGACTGGACTAATTCCAAG TGGAAAGGCACCTCCAAAGGCATGACTGGACTAATTCCAAG < 41bp 0.894593413535688 0.657350026331259 0.15232718 0.053881884 prediction 0.474486774408858 Functional Loss - OSTF1 ENSG00000134996 CDS Human protein_coding chr9:77745529 chr9:77745531 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_70728 0 0 1 0 2 OSTF1 chr9:77745557 5'GT 77745557 Upstream 27bp
chr19 48519200 48519200 1 + A C HNSC 48519199 + 48519179 48519219 41 TATCGAGGAAAGGCTTATAACAGCTGCATCTCCCAGGGCAG TATCGAGGAAAGGCTTATAACCGCTGCATCTCCCAGGGCAG < 41bp 0.811431104472693 0.574191920465302 0.44343147 0.28071645 prediction 0.474478368014782 Functional Loss - ELSPBP1 ENSG00000169393 CDS Human protein_coding chr19:48519199 chr19:48519200 nonsynonymous SNV 0.490 1 22 hm5C_associated_SNPs_70729 0 0 0 0 2 ELSPBP1 chr19:48519150 3'AG 48519150 Downstream 51bp
chr19 48519200 48519200 1 + A C HNSC 48519199 + 48519179 48519219 41 TATCGAGGAAAGGCTTATAACAGCTGCATCTCCCAGGGCAG TATCGAGGAAAGGCTTATAACCGCTGCATCTCCCAGGGCAG < 41bp 0.811431104472693 0.574191920465302 0.44343147 0.28071645 prediction 0.474478368014782 Functional Loss - ELSPBP1 ENSG00000169393 CDS Human protein_coding chr19:48519199 chr19:48519200 nonsynonymous SNV 0.490 1 22 hm5C_associated_SNPs_70729 0 0 0 0 2 ELSPBP1 chr19:48519296 5'GT 48519296 Upstream 97bp
chr7 75615286 75615286 1 + C T rs370645073 75615284 + 75615264 75615304 41 CTGTACTACGGCTGCCGCCGCTCGGATGAGGACTACCTGTA CTGTACTACGGCTGCCGCCGCTTGGATGAGGACTACCTGTA < 41bp 0.798966874587496 0.561730066556901 0.3989119 0.43534636 prediction 0.474473616061189 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75615284 chr7:75615286 nonsynonymous SNV 0.166 1 23 hm5C_associated_SNPs_70731 0 0 1 0 1 POR chr7:75615241 3'AG 75615241 Downstream 46bp
chr3 113563455 113563455 1 + G T LUAD 113563452 + 113563432 113563472 41 ATAATGTGGTAGTTAAAAAACAGGGGCCAAATTTACATAAT ATAATGTGGTAGTTAAAAAACAGTGGCCAAATTTACATAAT < 41bp 0.737236567526134 0.366528172203681 0.89101493 0.43082458 prediction 0.474473135052269 Functional Loss - GRAMD1C ENSG00000178075 CDS Human protein_coding chr3:113563452 chr3:113563455 nonsynonymous SNV 0.952 3 24 hm5C_associated_SNPs_70732 0 0 0 4 1 GRAMD1C chr3:113563496 5'GT 113563496 Upstream 42bp
chr1 6304475 6304475 1 + A C UCEC 6304471 + 6304451 6304491 41 TCAATGTGTCACTGGAGCAGCTCAAGTCGCTGCTGGAGAAA TCAATGTGTCACTGGAGCAGCTCACGTCGCTGCTGGAGAAA < 41bp 0.737223458585103 0.323760439859679 0.26270437 0.14567164 prediction 0.474446917170205 Functional Loss - HES3 ENSG00000173673 CDS Human protein_coding chr1:6304471 chr1:6304475 nonsynonymous SNV 0.981 3 25 hm5C_associated_SNPs_70736 0 0 0 0 2 HES3 chr1:6304411 3'AG 6304411 Downstream 65bp
chr1 6304475 6304475 1 + A C UCEC 6304471 + 6304451 6304491 41 TCAATGTGTCACTGGAGCAGCTCAAGTCGCTGCTGGAGAAA TCAATGTGTCACTGGAGCAGCTCACGTCGCTGCTGGAGAAA < 41bp 0.737223458585103 0.323760439859679 0.26270437 0.14567164 prediction 0.474446917170205 Functional Loss - HES3 ENSG00000173673 CDS Human protein_coding chr1:6304471 chr1:6304475 nonsynonymous SNV 0.981 3 25 hm5C_associated_SNPs_70736 0 0 0 0 2 HES3 chr1:6304506 5'GT 6304506 Upstream 32bp
chrX 47104880 47104880 1 + T C UCEC 47104879 + 47104859 47104899 41 ACCCTGGAGAAGGAAAACCCCTGGTGAGGGGCCAGAGCGGG ACCCTGGAGAAGGAAAACCCCCGGTGAGGGGCCAGAGCGGG < 41bp 0.751899246840732 0.514677058226212 0.2984696 0.32511285 prediction 0.474444377229042 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47104879 chrX:47104880 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_70737 0 0 1 0 1 USP11 chrX:47104881 5'GT 47104881 Upstream 2bp
chr12 101763631 101763631 1 + A C rs150422308 101763630 + 101763610 101763650 41 TATGCAAAGCTCGGGGCCGCCAGGGGCCAGAACTTCCACCT TATGCAAAGCTCGGGGCCGCCCGGGGCCAGAACTTCCACCT < 41bp 0.737218725082049 0.492961566618285 0.94898725 0.94029695 prediction 0.474437450164098 Functional Loss - UTP20 ENSG00000120800 CDS Human protein_coding chr12:101763630 chr12:101763631 synonymous SNV . 0 22 hm5C_associated_SNPs_70739 0 0 0 0 1 UTP20 chr12:101763669 5'GT 101763669 Upstream 39bp
chr19 16198861 16198861 1 + G T UCEC 16198858 + 16198838 16198878 41 TAGCTCGTAAGCTGGTCATCCTGGAGGGTGAGCTGGAGAGG TAGCTCGTAAGCTGGTCATCCTGTAGGGTGAGCTGGAGAGG < 41bp 0.924522576401427 0.687304944686661 0.24516428 0.21084777 prediction 0.474435263429531 Functional Loss - TPM4 ENSG00000167460 CDS Human protein_coding chr19:16198858 chr19:16198861 stopgain 0.992 0 24 hm5C_associated_SNPs_70741 0 0 1 0 2 TPM4 chr19:16198837 3'AG 16198837 Downstream 25bp
chr19 16198861 16198861 1 + G T UCEC 16198858 + 16198838 16198878 41 TAGCTCGTAAGCTGGTCATCCTGGAGGGTGAGCTGGAGAGG TAGCTCGTAAGCTGGTCATCCTGTAGGGTGAGCTGGAGAGG < 41bp 0.924522576401427 0.687304944686661 0.24516428 0.21084777 prediction 0.474435263429531 Functional Loss - TPM4 ENSG00000167460 CDS Human protein_coding chr19:16198858 chr19:16198861 stopgain 0.992 0 24 hm5C_associated_SNPs_70741 0 0 1 0 2 TPM4 chr19:16198907 5'GT 16198907 Upstream 47bp
chr20 17437036 17437036 1 + G T HNSC 17437033 + 17437013 17437053 41 CAACTGCACTCTGAGGCATTCTGGGACATCTGCAGCTGCCC CAACTGCACTCTGAGGCATTCTGTGACATCTGCAGCTGCCC < 41bp 0.737214827600631 0.340584338737161 0.8907549 0.37166774 prediction 0.474429655201261 Functional Loss - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17437033 chr20:17437036 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_70744 0 0 0 0 2 PCSK2 chr20:17436993 3'AG 17436993 Downstream 44bp
chr20 17437036 17437036 1 + G T HNSC 17437033 + 17437013 17437053 41 CAACTGCACTCTGAGGCATTCTGGGACATCTGCAGCTGCCC CAACTGCACTCTGAGGCATTCTGTGACATCTGCAGCTGCCC < 41bp 0.737214827600631 0.340584338737161 0.8907549 0.37166774 prediction 0.474429655201261 Functional Loss - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17437033 chr20:17437036 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_70744 0 0 0 0 2 PCSK2 chr20:17437093 5'GT 17437093 Upstream 58bp
chr1 45267395 45267395 1 + C T LUSC 45267393 + 45267373 45267413 41 GCCTCAAGTACTTGCACCAGCGCGGCATCTTGCACCGGGAC GCCTCAAGTACTTGCACCAGCGTGGCATCTTGCACCGGGAC < 41bp 0.737212746611726 0.484374728750961 0.6583807 0.4562934 prediction 0.474425493223453 Functional Loss - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267393 chr1:45267395 synonymous SNV . 0 23 hm5C_associated_SNPs_70746 0 0 1 0 1 PLK3 chr1:45267423 5'GT 45267423 Upstream 29bp
chr8 27362496 27362496 1 + A T KIRC 27362492 + 27362472 27362512 41 GGATTCACTACTGCCATCCTCACCAACACCTGGCTGGACGA GGATTCACTACTGCCATCCTCACCTACACCTGGCTGGACGA < 41bp 0.737211933385064 0.390229113133293 0.3306116 0.2130591 prediction 0.474423866770128 Functional Loss - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27362492 chr8:27362496 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_70747 0 0 1 0 1 EPHX2 chr8:27362473 3'AG 27362473 Downstream 24bp
chr8 27362494 27362494 1 + C T UCEC 27362492 + 27362472 27362512 41 GGATTCACTACTGCCATCCTCACCAACACCTGGCTGGACGA GGATTCACTACTGCCATCCTCATCAACACCTGGCTGGACGA < 41bp 0.737211933385064 0.446057731506717 0.3306116 0.15700555 prediction 0.474423866770128 Functional Loss - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27362492 chr8:27362494 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_70748 0 0 1 0 1 EPHX2 chr8:27362473 3'AG 27362473 Downstream 22bp
chr6 90305728 90305728 1 + G A UCEC 90305725 + 90305705 90305745 41 CTGGCTGCGACCTTGATGTCCAGGATGATGTGAGTAGAAGC CTGGCTGCGACCTTGATGTCCAGAATGATGTGAGTAGAAGC < 41bp 0.739513929145786 0.502309057729335 0.079248875 0.027838439 prediction 0.474409742832901 Functional Loss - ANKRD6 ENSG00000135299 CDS Human protein_coding chr6:90305725 chr6:90305728 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_70751 0 0 0 0 2 ANKRD6 chr6:90305635 3'AG 90305635 Downstream 94bp
chr6 90305728 90305728 1 + G A UCEC 90305725 + 90305705 90305745 41 CTGGCTGCGACCTTGATGTCCAGGATGATGTGAGTAGAAGC CTGGCTGCGACCTTGATGTCCAGAATGATGTGAGTAGAAGC < 41bp 0.739513929145786 0.502309057729335 0.079248875 0.027838439 prediction 0.474409742832901 Functional Loss - ANKRD6 ENSG00000135299 CDS Human protein_coding chr6:90305725 chr6:90305728 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_70751 0 0 0 0 2 ANKRD6 chr6:90305733 5'GT 90305733 Upstream 6bp
chr14 78392115 78392115 1 + G A rs55721310 78392112 + 78392092 78392132 41 CCGCCTCCACCCTAGATGCTCACGGAAGAATTCCGCCTGAA CCGCCTCCACCCTAGATGCTCACAGAAGAATTCCGCCTGAA < 41bp 0.763545900286791 0.526343232893225 0.88420045 0.30878663 prediction 0.474405334787131 Functional Loss - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78392112 chr14:78392115 synonymous SNV . 0 24 hm5C_associated_SNPs_70752 0 0 0 0 1 ADCK1 chr14:78392107 3'AG 78392107 Downstream 9bp
chr1 234452438 234452438 1 + G A SKCM 234452435 + 234452415 234452455 41 ACTCCGTCATCGGCATCGCACTGGTGGTGGCCTCAGCATCG ACTCCGTCATCGGCATCGCACTGATGGTGGCCTCAGCATCG < 41bp 0.76723658047955 0.530035209415694 0.2927898 0.10107455 prediction 0.474402742127713 Functional Loss - SLC35F3 ENSG00000183780 CDS Human protein_coding chr1:234452435 chr1:234452438 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_70753 0 0 0 0 2 SLC35F3 chr1:234452348 3'AG 234452348 Downstream 91bp
chr1 234452438 234452438 1 + G A SKCM 234452435 + 234452415 234452455 41 ACTCCGTCATCGGCATCGCACTGGTGGTGGCCTCAGCATCG ACTCCGTCATCGGCATCGCACTGATGGTGGCCTCAGCATCG < 41bp 0.76723658047955 0.530035209415694 0.2927898 0.10107455 prediction 0.474402742127713 Functional Loss - SLC35F3 ENSG00000183780 CDS Human protein_coding chr1:234452435 chr1:234452438 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_70753 0 0 0 0 2 SLC35F3 chr1:234452473 5'GT 234452473 Upstream 36bp
chr20 43942757 43942757 1 + G A UCEC 43942754 + 43942734 43942774 41 TCCCTGGTGCAGCTCGTCTGCACGGTCACCGGCATCACACT TCCCTGGTGCAGCTCGTCTGCACAGTCACCGGCATCACACT < 41bp 0.75791643210144 0.520716761826994 0.27973765 0.24031276 prediction 0.474399340548892 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43942754 chr20:43942757 synonymous SNV . 0 24 hm5C_associated_SNPs_70754 0 0 0 0 2 RBPJL chr20:43942675 3'AG 43942675 Downstream 83bp
chr20 43942757 43942757 1 + G A UCEC 43942754 + 43942734 43942774 41 TCCCTGGTGCAGCTCGTCTGCACGGTCACCGGCATCACACT TCCCTGGTGCAGCTCGTCTGCACAGTCACCGGCATCACACT < 41bp 0.75791643210144 0.520716761826994 0.27973765 0.24031276 prediction 0.474399340548892 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43942754 chr20:43942757 synonymous SNV . 0 24 hm5C_associated_SNPs_70754 0 0 0 0 2 RBPJL chr20:43942784 5'GT 43942784 Upstream 28bp
chr15 69347794 69347794 1 + C T HNSC 69347792 + 69347772 69347812 41 AAGGAGAAGAAAGACTCCATCACGGGGCTGCAGACGCGCAC AAGGAGAAGAAAGACTCCATCATGGGGCTGCAGACGCGCAC < 41bp 0.811483950865995 0.574284897729867 0.9509593 0.94467986 prediction 0.474398106272256 Functional Loss - NOX5 ENSG00000255346 CDS Human protein_coding chr15:69347792 chr15:69347794 nonsynonymous SNV 0.463 5 23 hm5C_associated_SNPs_70755 0 0 0 0 1 NOX5 chr15:69347840 5'GT 69347840 Upstream 47bp
chr19 16793300 16793300 1 + G C BLCA 16793299 + 16793279 16793319 41 GTCTGGAAGCCAGAGACCAACGAGATCCTGCACATGTCTTT GTCTGGAAGCCAGAGACCAACCAGATCCTGCACATGTCTTT < 41bp 0.874451549455974 0.637254192873354 0.28303462 0.08374682 prediction 0.474394713165241 Functional Loss - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16793299 chr19:16793300 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_70756 0 0 0 0 2 TMEM38A chr19:16793232 3'AG 16793232 Downstream 69bp
chr19 16793300 16793300 1 + G C BLCA 16793299 + 16793279 16793319 41 GTCTGGAAGCCAGAGACCAACGAGATCCTGCACATGTCTTT GTCTGGAAGCCAGAGACCAACCAGATCCTGCACATGTCTTT < 41bp 0.874451549455974 0.637254192873354 0.28303462 0.08374682 prediction 0.474394713165241 Functional Loss - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16793299 chr19:16793300 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_70756 0 0 0 0 2 TMEM38A chr19:16793319 5'GT 16793319 Upstream 20bp
chr2 26672938 26672938 1 + G T STAD 26672936 + 26672916 26672956 41 ATGAATGCTATCTGCTGAGGCTGGATGCCATCTTCTCCGTG ATGAATGCTATCTGCTGAGGCTTGATGCCATCTTCTCCGTG < 41bp 0.897615869279582 0.660424799029113 0.44039577 0.27889338 prediction 0.474382140500938 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26672936 chr2:26672938 synonymous SNV . 0 23 hm5C_associated_SNPs_70758 0 0 0 0 2 DRC1 chr2:26672864 3'AG 26672864 Downstream 75bp
chr2 26672938 26672938 1 + G T STAD 26672936 + 26672916 26672956 41 ATGAATGCTATCTGCTGAGGCTGGATGCCATCTTCTCCGTG ATGAATGCTATCTGCTGAGGCTTGATGCCATCTTCTCCGTG < 41bp 0.897615869279582 0.660424799029113 0.44039577 0.27889338 prediction 0.474382140500938 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26672936 chr2:26672938 synonymous SNV . 0 23 hm5C_associated_SNPs_70758 0 0 0 0 2 DRC1 chr2:26672953 5'GT 26672953 Upstream 16bp
chr1 162773287 162773287 1 + C T SKCM 162773285 + 162773265 162773305 41 TTTGACATATGGAATTCTGCCTCCGTTTATATGGACGCTGT TTTGACATATGGAATTCTGCCTTCGTTTATATGGACGCTGT < 41bp 0.737188733063368 0.44889558206637 0.06283596 0.043660402 prediction 0.474377466126736 Functional Loss - HSD17B7 ENSG00000132196 CDS Human protein_coding chr1:162773285 chr1:162773287 nonsynonymous SNV 0.039 0 23 hm5C_associated_SNPs_70760 0 0 1 1 1 HSD17B7 chr1:162773325 5'GT 162773325 Upstream 39bp
chr7 75610444 75610444 1 + G A UCEC 75610441 + 75610421 75610461 41 TGGACAAGCGGCTGGAGCAGCTCGGCGCCCAGCGCATCTTT TGGACAAGCGGCTGGAGCAGCTCAGCGCCCAGCGCATCTTT < 41bp 0.766454947049231 0.529270548699341 0.37006187 0.20320028 prediction 0.474368796699779 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75610441 chr7:75610444 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_70762 0 0 1 0 2 POR chr7:75610366 3'AG 75610366 Downstream 79bp
chr7 75610444 75610444 1 + G A UCEC 75610441 + 75610421 75610461 41 TGGACAAGCGGCTGGAGCAGCTCGGCGCCCAGCGCATCTTT TGGACAAGCGGCTGGAGCAGCTCAGCGCCCAGCGCATCTTT < 41bp 0.766454947049231 0.529270548699341 0.37006187 0.20320028 prediction 0.474368796699779 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75610441 chr7:75610444 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_70762 0 0 1 0 2 POR chr7:75610490 5'GT 75610490 Upstream 47bp
chr16 31235507 31235507 1 + G A SKCM 31235504 + 31235484 31235524 41 CCGTGTTCTCTCTGGCAGCGCTGGAGGAGCTGACCTTTGAC CCGTGTTCTCTCTGGCAGCGCTGAAGGAGCTGACCTTTGAC < 41bp 0.767914465681831 0.530730423510606 0.7793608 0.3433364 prediction 0.474368084342449 Functional Loss - TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31235504 chr16:31235507 nonsynonymous SNV 0.731 0 24 hm5C_associated_SNPs_70763 0 0 0 0 1 TRIM72 chr16:31235502 3'AG 31235502 Downstream 6bp
chr16 81301724 81301724 1 + C T LAML 81301722 + 81301702 81301742 41 GGGCCTCCTGCCTGGCTTTCCACAGGGAGGAGAAGGTGAGG GGGCCTCCTGCCTGGCTTTCCATAGGGAGGAGAAGGTGAGG < 41bp 0.784261426660506 0.547080161250981 0.68420845 0.89036477 prediction 0.474362530819051 Functional Loss - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81301722 chr16:81301724 synonymous SNV . 0 23 hm5C_associated_SNPs_70764 0 0 0 0 1 BCO1 chr16:81301736 5'GT 81301736 Upstream 13bp
chr1 32655677 32655677 1 + C T UCEC 32655675 + 32655655 32655695 41 GGAAGAAGGTGTGCAGCGGGCCCGGGAGGAGGAGGAGAAGC GGAAGAAGGTGTGCAGCGGGCCTGGGAGGAGGAGGAGAAGC < 41bp 0.73717960102625 0.470578475112856 0.30322486 0.33267257 prediction 0.474359202052501 Functional Loss - TXLNA ENSG00000084652 CDS Human protein_coding chr1:32655675 chr1:32655677 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_70765 0 0 1 0 1 TXLNA chr1:32655656 3'AG 32655656 Downstream 22bp
chr11 32610272 32610272 1 + T C KIRC 32610271 + 32610251 32610291 41 GTGAACGCCCGTCTCTGAGACTGCAGTTGTAAGTTAAGATC GTGAACGCCCGTCTCTGAGACCGCAGTTGTAAGTTAAGATC < 41bp 0.755866039700395 0.518686749599966 0.22756994 0.23285735 prediction 0.474358580200858 Functional Loss - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32610271 chr11:32610272 nonsynonymous SNV 0.913 2 22 hm5C_associated_SNPs_70766 0 0 1 0 1 EIF3M chr11:32610278 5'GT 32610278 Upstream 7bp
chr11 34153078 34153078 1 + T C UCEC 34153077 + 34153057 34153097 41 CCTTGCCTGAAGCTTGTGAACTGTATCCTCCTCTGGGTTTC CCTTGCCTGAAGCTTGTGAACCGTATCCTCCTCTGGGTTTC < 41bp 0.737177654015974 0.48676580581838 0.3540128 0.3904156 prediction 0.474355308031949 Functional Loss - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34153077 chr11:34153078 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_70768 0 0 1 0 1 NAT10 chr11:34153078 5'GT 34153078 Upstream 1bp
chr5 149563088 149563088 1 + A T SKCM 149563084 + 149563064 149563104 41 GCAAAGGAGCGCAAAGTGAACAAGAAGAAACAGCAGCAGCA GCAAAGGAGCGCAAAGTGAACAAGTAGAAACAGCAGCAGCA < 41bp 0.859907702849551 0.622739762459909 0.3871823 0.41116202 prediction 0.474335880779285 Functional Loss - CDX1 ENSG00000113722 CDS Human protein_coding chr5:149563084 chr5:149563088 stopgain 0.996 1 25 hm5C_associated_SNPs_70771 0 0 0 0 1 CDX1 chr5:149563037 3'AG 149563037 Downstream 52bp
chr12 53677876 53677876 1 + G A BLCA 53677873 + 53677853 53677893 41 TCCTGGTGCTGAAGGGCGAGCTGGAGCTGGCCCGCAATGAC TCCTGGTGCTGAAGGGCGAGCTGAAGCTGGCCCGCAATGAC < 41bp 0.756835382815984 0.519669133231597 0.5218187 0.39977562 prediction 0.474332499168774 Functional Loss - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53677873 chr12:53677876 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_70772 0 0 1 0 2 ESPL1 chr12:53677842 3'AG 53677842 Downstream 35bp
chr12 53677876 53677876 1 + G A BLCA 53677873 + 53677853 53677893 41 TCCTGGTGCTGAAGGGCGAGCTGGAGCTGGCCCGCAATGAC TCCTGGTGCTGAAGGGCGAGCTGAAGCTGGCCCGCAATGAC < 41bp 0.756835382815984 0.519669133231597 0.5218187 0.39977562 prediction 0.474332499168774 Functional Loss - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53677873 chr12:53677876 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_70772 0 0 1 0 2 ESPL1 chr12:53677951 5'GT 53677951 Upstream 76bp
chr3 127981028 127981028 1 + C T GBM 127981026 + 127981006 127981046 41 AGCCGGGGGGACCAGAGGCCCCCGAAACTGAAGCTCCACAG AGCCGGGGGGACCAGAGGCCCCTGAAACTGAAGCTCCACAG < 41bp 0.737165864259804 0.471646315111383 0.84713364 0.8713206 prediction 0.474331728519608 Functional Loss - EEFSEC ENSG00000132394 CDS Human protein_coding chr3:127981026 chr3:127981028 synonymous SNV . 0 23 hm5C_associated_SNPs_70773 0 0 1 0 2 EEFSEC chr3:127980971 3'AG 127980971 Downstream 58bp
chr3 127981028 127981028 1 + C T GBM 127981026 + 127981006 127981046 41 AGCCGGGGGGACCAGAGGCCCCCGAAACTGAAGCTCCACAG AGCCGGGGGGACCAGAGGCCCCTGAAACTGAAGCTCCACAG < 41bp 0.737165864259804 0.471646315111383 0.84713364 0.8713206 prediction 0.474331728519608 Functional Loss - EEFSEC ENSG00000132394 CDS Human protein_coding chr3:127981026 chr3:127981028 synonymous SNV . 0 23 hm5C_associated_SNPs_70773 0 0 1 0 2 EEFSEC chr3:127981067 5'GT 127981067 Upstream 40bp
chr2 44079585 44079585 1 + C T LAML 44079583 + 44079563 44079603 41 GGGGGTTGTCGGGGGGTGAGCGCAGGAGAGTCAGCATTGGG GGGGGTTGTCGGGGGGTGAGCGTAGGAGAGTCAGCATTGGG < 41bp 0.791781497374236 0.554620707168233 0.9107728 0.9117591 prediction 0.474321580412008 Functional Loss - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44079583 chr2:44079585 synonymous SNV . 0 23 hm5C_associated_SNPs_70774 0 0 1 0 2 ABCG8 chr2:44079493 3'AG 44079493 Downstream 93bp
chr2 44079585 44079585 1 + C T LAML 44079583 + 44079563 44079603 41 GGGGGTTGTCGGGGGGTGAGCGCAGGAGAGTCAGCATTGGG GGGGGTTGTCGGGGGGTGAGCGTAGGAGAGTCAGCATTGGG < 41bp 0.791781497374236 0.554620707168233 0.9107728 0.9117591 prediction 0.474321580412008 Functional Loss - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44079583 chr2:44079585 synonymous SNV . 0 23 hm5C_associated_SNPs_70774 0 0 1 0 2 ABCG8 chr2:44079625 5'GT 44079625 Upstream 41bp
chr9 82336743 82336743 1 + G A UCEC 82336740 + 82336720 82336760 41 TGGACAGGTGGTTTGGACAACACGGTCAGGTCCTGGGACCT TGGACAGGTGGTTTGGACAACACAGTCAGGTCCTGGGACCT < 41bp 0.746030416563314 0.508873379822648 0.19745347 0.03549102 prediction 0.474314073481333 Functional Loss - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82336740 chr9:82336743 synonymous SNV . 0 24 hm5C_associated_SNPs_70775 0 0 0 0 2 TLE4 chr9:82336656 3'AG 82336656 Downstream 88bp
chr9 82336743 82336743 1 + G A UCEC 82336740 + 82336720 82336760 41 TGGACAGGTGGTTTGGACAACACGGTCAGGTCCTGGGACCT TGGACAGGTGGTTTGGACAACACAGTCAGGTCCTGGGACCT < 41bp 0.746030416563314 0.508873379822648 0.19745347 0.03549102 prediction 0.474314073481333 Functional Loss - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82336740 chr9:82336743 synonymous SNV . 0 24 hm5C_associated_SNPs_70775 0 0 0 0 2 TLE4 chr9:82336803 5'GT 82336803 Upstream 61bp
chr1 9670637 9670637 1 + G A rs182793432 9670634 + 9670614 9670654 41 CCAGCGCCTTCCGTGGCCGGCTCGGTGGCCTCCAGCTCCGG CCAGCGCCTTCCGTGGCCGGCTCAGTGGCCTCCAGCTCCGG < 41bp 0.743988808577975 0.506856555629599 0.42323807 0.3920681 prediction 0.474264505896751 Functional Loss - TMEM201 ENSG00000188807 CDS Human protein_coding chr1:9670634 chr1:9670637 synonymous SNV . 0 24 hm5C_associated_SNPs_70777 0 0 1 0 1 TMEM201 chr1:9670564 3'AG 9670564 Downstream 74bp
chr7 2644558 2644558 1 + G A PCPG 2644555 + 2644535 2644575 41 AGCTTTCAGGGGACATCTCACGCGGACAAAGCTCTTAGCAA AGCTTTCAGGGGACATCTCACGCAGACAAAGCTCTTAGCAA < 41bp 0.770631449404747 0.533499340712683 0.9379976 0.8429762 prediction 0.474264217384128 Functional Loss - IQCE ENSG00000106012 CDS Human protein_coding chr7:2644555 chr7:2644558 nonsynonymous SNV 0.003 2 24 hm5C_associated_SNPs_70778 0 0 0 0 2 IQCE chr7:2644515 3'AG 2644515 Downstream 44bp
chr7 2644558 2644558 1 + G A PCPG 2644555 + 2644535 2644575 41 AGCTTTCAGGGGACATCTCACGCGGACAAAGCTCTTAGCAA AGCTTTCAGGGGACATCTCACGCAGACAAAGCTCTTAGCAA < 41bp 0.770631449404747 0.533499340712683 0.9379976 0.8429762 prediction 0.474264217384128 Functional Loss - IQCE ENSG00000106012 CDS Human protein_coding chr7:2644555 chr7:2644558 nonsynonymous SNV 0.003 2 24 hm5C_associated_SNPs_70778 0 0 0 0 2 IQCE chr7:2644625 5'GT 2644625 Upstream 68bp
chr9 127088704 127088704 1 + G A SARC 127088701 + 127088681 127088721 41 GTGGAGCACATGCATTCACGCCGGGTGATGCACCGAGGTAC GTGGAGCACATGCATTCACGCCGAGTGATGCACCGAGGTAC < 41bp 0.776886515651956 0.539768903574935 0.8743137 0.47000134 prediction 0.474235224154042 Functional Loss - NEK6 ENSG00000119408 CDS Human protein_coding chr9:127088701 chr9:127088704 synonymous SNV . 0 24 hm5C_associated_SNPs_70786 0 0 1 0 2 NEK6 chr9:127088609 3'AG 127088609 Downstream 96bp
chr9 127088704 127088704 1 + G A SARC 127088701 + 127088681 127088721 41 GTGGAGCACATGCATTCACGCCGGGTGATGCACCGAGGTAC GTGGAGCACATGCATTCACGCCGAGTGATGCACCGAGGTAC < 41bp 0.776886515651956 0.539768903574935 0.8743137 0.47000134 prediction 0.474235224154042 Functional Loss - NEK6 ENSG00000119408 CDS Human protein_coding chr9:127088701 chr9:127088704 synonymous SNV . 0 24 hm5C_associated_SNPs_70786 0 0 1 0 2 NEK6 chr9:127088717 5'GT 127088717 Upstream 14bp
chr5 50685725 50685725 1 + A C UCEC 50685724 + 50685704 50685744 41 AAGGACAAGAAGCGAAGCATCATGATGAAGCAACTCCAGCA AAGGACAAGAAGCGAAGCATCCTGATGAAGCAACTCCAGCA < 41bp 0.786595072824378 0.549477506688308 0.13585216 0.10301012 prediction 0.474235132272139 Functional Loss - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50685724 chr5:50685725 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_70787 0 0 0 0 1 ISL1 chr5:50685766 5'GT 50685766 Upstream 42bp
chr19 10789837 10789837 1 + G A COAD 10789834 + 10789814 10789854 41 GGTCTTGAGGGACCTGTGCACTCGCGTGCCCACCTGGGGTC GGTCTTGAGGGACCTGTGCACTCACGTGCCCACCTGGGGTC < 41bp 0.764963098350783 0.527848254556862 0.85166395 0.6051388 prediction 0.474229687587842 Functional Loss - ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789834 chr19:10789837 nonsynonymous SNV 0.804 4 24 hm5C_associated_SNPs_70789 0 0 1 0 2 ILF3 chr19:10789773 3'AG 10789773 Downstream 65bp
chr19 10789837 10789837 1 + G A COAD 10789834 + 10789814 10789854 41 GGTCTTGAGGGACCTGTGCACTCGCGTGCCCACCTGGGGTC GGTCTTGAGGGACCTGTGCACTCACGTGCCCACCTGGGGTC < 41bp 0.764963098350783 0.527848254556862 0.85166395 0.6051388 prediction 0.474229687587842 Functional Loss - ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789834 chr19:10789837 nonsynonymous SNV 0.804 4 24 hm5C_associated_SNPs_70789 0 0 1 0 2 ILF3 chr19:10789868 5'GT 10789868 Upstream 32bp
chr9 71114163 71114163 1 + G A COAD 71114160 + 71114140 71114180 41 CAGGGCCTAAGGATCATTTTCTCGGATGCATCACGGCTCAT CAGGGCCTAAGGATCATTTTCTCAGATGCATCACGGCTCAT < 41bp 0.752858594545733 0.515744443414374 0.62728554 0.26187414 prediction 0.474228302262719 Functional Loss - PGM5 ENSG00000154330 CDS Human protein_coding chr9:71114160 chr9:71114163 synonymous SNV . 0 24 hm5C_associated_SNPs_70791 0 0 0 0 1 PGM5 chr9:71114143 3'AG 71114143 Downstream 21bp
chr19 41928947 41928947 1 + C T COAD 41928945 + 41928925 41928965 41 GACGACAGTTCAGCGTACCGCTCGGTGGATGAGGTCAATTA GACGACAGTTCAGCGTACCGCTTGGTGGATGAGGTCAATTA < 41bp 0.831755797480024 0.594647542127991 0.19519347 0.17827949 prediction 0.474216510704067 Functional Loss - BCKDHA ENSG00000248098;ENSG00000255730 CDS Human other chr19:41928945 chr19:41928947 nonsynonymous SNV 0.666 5 23 hm5C_associated_SNPs_70793 0 0 1 0 1 BCKDHA chr19:41928903 3'AG 41928903 Downstream 45bp
chr16 1397610 1397610 1 + T C BLCA 1397609 + 1397589 1397629 41 AGTGCATCGAGCAGTTCTACCTGGACAAGCTCAAACAGGTA AGTGCATCGAGCAGTTCTACCCGGACAAGCTCAAACAGGTA < 41bp 0.737107618262476 0.489532974569444 0.3364706 0.42360407 prediction 0.474215236524953 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1397609 chr16:1397610 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_70794 0 0 0 0 2 BAIAP3 chr16:1397546 3'AG 1397546 Downstream 65bp
chr16 1397610 1397610 1 + T C BLCA 1397609 + 1397589 1397629 41 AGTGCATCGAGCAGTTCTACCTGGACAAGCTCAAACAGGTA AGTGCATCGAGCAGTTCTACCCGGACAAGCTCAAACAGGTA < 41bp 0.737107618262476 0.489532974569444 0.3364706 0.42360407 prediction 0.474215236524953 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1397609 chr16:1397610 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_70794 0 0 0 0 2 BAIAP3 chr16:1397626 5'GT 1397626 Upstream 17bp
chr1 47534390 47534390 1 + A C STAD 47534386 + 47534366 47534406 41 GTTGGACCCTTTACGATGTTCTTCAGTGTCCATGACCCAGA GTTGGACCCTTTACGATGTTCTTCCGTGTCCATGACCCAGA < 41bp 0.737100946295948 0.312368484998596 0.124842644 0.02784136 prediction 0.474201892591896 Functional Loss - CYP4Z1 ENSG00000186160 CDS Human protein_coding chr1:47534386 chr1:47534390 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_70797 0 0 0 0 2 CYP4Z1 chr1:47534294 3'AG 47534294 Downstream 97bp
chr1 47534390 47534390 1 + A C STAD 47534386 + 47534366 47534406 41 GTTGGACCCTTTACGATGTTCTTCAGTGTCCATGACCCAGA GTTGGACCCTTTACGATGTTCTTCCGTGTCCATGACCCAGA < 41bp 0.737100946295948 0.312368484998596 0.124842644 0.02784136 prediction 0.474201892591896 Functional Loss - CYP4Z1 ENSG00000186160 CDS Human protein_coding chr1:47534386 chr1:47534390 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_70797 0 0 0 0 2 CYP4Z1 chr1:47534435 5'GT 47534435 Upstream 46bp
chr11 118869166 118869166 1 + C T KIRP 118869164 + 118869144 118869184 41 AGGCGGCCCGCAAGGCCATCCGCGCCGCTCAGGTGGAGCGC AGGCGGCCCGCAAGGCCATCCGTGCCGCTCAGGTGGAGCGC < 41bp 0.788792403836358 0.551696791552588 0.43520766 0.3843713 prediction 0.47419122456754 Functional Loss - CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118869164 chr11:118869166 synonymous SNV . 0 23 hm5C_associated_SNPs_70799 0 0 1 0 1 CCDC84 chr11:118869140 3'AG 118869140 Downstream 27bp
chr1 236341849 236341849 1 + G A COAD 236341846 + 236341826 236341866 41 GTGCGAGTGGCCATTAATGACACGCTCTTCGTGCTGTGTGC GTGCGAGTGGCCATTAATGACACACTCTTCGTGCTGTGTGC < 41bp 0.737088991530171 0.496974785174255 0.041799784 0.02028042 prediction 0.474177983060343 Functional Loss - GPR137B ENSG00000077585 CDS Human protein_coding chr1:236341846 chr1:236341849 synonymous SNV . 0 24 hm5C_associated_SNPs_70802 0 0 1 0 1 GPR137B chr1:236341936 5'GT 236341936 Upstream 88bp
chr3 40192560 40192560 1 + G T UCEC 40192558 + 40192538 40192578 41 GGCTTCTGAGGGCCCAATCTCTGGAATGGTTCTACAATAAT GGCTTCTGAGGGCCCAATCTCTTGAATGGTTCTACAATAAT < 41bp 0.737088747711843 0.421379660034684 0.6737248 0.35936224 prediction 0.474177495423686 Functional Loss - MYRIP ENSG00000170011 CDS Human protein_coding chr3:40192558 chr3:40192560 synonymous SNV . 0 23 hm5C_associated_SNPs_70805 0 0 0 0 1 MYRIP chr3:40192539 3'AG 40192539 Downstream 22bp
chr1 116916064 116916064 1 + A C rs546221648 116916060 + 116916040 116916080 41 CCTGGTCCCGCTCGCTCGGCCGGGAGCTGCTCTGTGCTTTT CCTGGTCCCGCTCGCTCGGCCGGGCGCTGCTCTGTGCTTTT < 41bp 0.910522728274267 0.673436042720495 0.88068616 0.5002389 prediction 0.474173371107543 Functional Loss - ATP1A1 ENSG00000269279 CDS Human other chr1:116916060 chr1:116916064 synonymous SNV . 0 25 hm5C_associated_SNPs_70806 0 0 1 0 1 ATP1A1 chr1:116916145 5'GT 116916145 Upstream 82bp
chr16 31500062 31500062 1 + G A CESC 31500059 + 31500039 31500079 41 TCTACACGCGCCTGCGGCCACGCGCCGGCGACCGCGAGCTG TCTACACGCGCCTGCGGCCACGCACCGGCGACCGCGAGCTG < 41bp 0.767258146964074 0.530176094317738 0.20577323 0.10496262 prediction 0.474164105292671 Functional Loss - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500059 chr16:31500062 nonsynonymous SNV 0.042 5 24 hm5C_associated_SNPs_70807 0 0 0 0 1 SLC5A2 chr16:31500093 5'GT 31500093 Upstream 32bp
chr19 34706141 34706141 1 + T C LUAD 34706140 + 34706120 34706160 41 AGCTGTTGGGAGAAGGAGTCCTGTATCAACCAGGCCTTTGC AGCTGTTGGGAGAAGGAGTCCCGTATCAACCAGGCCTTTGC < 41bp 0.793339342374648 0.55625899161212 0.36387807 0.40136296 prediction 0.474160701525056 Functional Loss - LSM14A ENSG00000257103 CDS Human protein_coding chr19:34706140 chr19:34706141 synonymous SNV . 0 22 hm5C_associated_SNPs_70809 0 0 1 0 1 LSM14A chr19:34706205 5'GT 34706205 Upstream 65bp
chr10 88416026 88416026 1 + G A SKCM 88416023 + 88416003 88416043 41 TGGTGGGACTCACGGGGATGCTGGGCAACCTGACGGTCATC TGGTGGGACTCACGGGGATGCTGAGCAACCTGACGGTCATC < 41bp 0.770409099891183 0.533331333662996 0.79891944 0.46330708 prediction 0.474155532456375 Functional Loss - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88416023 chr10:88416026 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_70811 0 0 0 0 1 OPN4 chr10:88416057 5'GT 88416057 Upstream 32bp
chr4 951666 951666 1 + C T BLCA 951664 + 951644 951684 41 AGGAGAGGTTCAGCGGCAGCCTCGTGGCCGCCCTGAGTGCG AGGAGAGGTTCAGCGGCAGCCTTGTGGCCGCCCTGAGTGCG < 41bp 0.737077245672921 0.475370068346909 0.5352642 0.43186757 prediction 0.474154491345842 Functional Loss - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:951664 chr4:951666 synonymous SNV . 0 23 hm5C_associated_SNPs_70812 0 0 0 0 1 TMEM175 chr4:951612 3'AG 951612 Downstream 55bp
chr1 175092600 175092600 1 + G A SKCM 175092597 + 175092577 175092617 41 GAGAATATGGCCACTGTCTCCTGGGACCCGGTTCAGGCCAC GAGAATATGGCCACTGTCTCCTGAGACCCGGTTCAGGCCAC < 41bp 0.737073263984207 0.498931785948229 0.82654095 0.4153264 prediction 0.474146527968414 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175092597 chr1:175092600 stopgain 0.898 1 24 hm5C_associated_SNPs_70815 0 0 0 0 1 TNN chr1:175092536 3'AG 175092536 Downstream 65bp
chr1 109779109 109779109 1 + C T LUAD 109779107 + 109779087 109779127 41 TTGGTCTCCTGTTCTAATTGCACGGATTACCAGGCTCGCCG TTGGTCTCCTGTTCTAATTGCATGGATTACCAGGCTCGCCG < 41bp 0.75262753961816 0.515558064319578 0.3340968 0.40312827 prediction 0.474138950597163 Functional Loss - SARS ENSG00000031698 CDS Human protein_coding chr1:109779107 chr1:109779109 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_70816 0 0 1 0 2 SARS chr1:109779013 3'AG 109779013 Downstream 97bp
chr1 109779109 109779109 1 + C T LUAD 109779107 + 109779087 109779127 41 TTGGTCTCCTGTTCTAATTGCACGGATTACCAGGCTCGCCG TTGGTCTCCTGTTCTAATTGCATGGATTACCAGGCTCGCCG < 41bp 0.75262753961816 0.515558064319578 0.3340968 0.40312827 prediction 0.474138950597163 Functional Loss - SARS ENSG00000031698 CDS Human protein_coding chr1:109779107 chr1:109779109 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_70816 0 0 1 0 2 SARS chr1:109779170 5'GT 109779170 Upstream 62bp
chr6 161160210 161160210 1 + G A COAD 161160207 + 161160187 161160227 41 TAGGCTGTTCTTGGAGCCCACACGAAAAGATATTGCCTTGC TAGGCTGTTCTTGGAGCCCACACAAAAAGATATTGCCTTGC < 41bp 0.747236384825238 0.51017039103825 0.69207966 0.2347692 prediction 0.474131987573976 Functional Loss - PLG ENSG00000122194 CDS Human protein_coding chr6:161160207 chr6:161160210 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_70818 0 0 0 0 1 PLG chr6:161160240 5'GT 161160240 Upstream 31bp
chr3 10858144 10858144 1 + G A GBM 10858141 + 10858121 10858161 41 GGAGTTCGTGCTGAGCGTGGCCGGGGAGATCATTGGGCTGG GGAGTTCGTGCTGAGCGTGGCCGAGGAGATCATTGGGCTGG < 41bp 0.762266613211571 0.52520410801333 0.9024768 0.57790715 prediction 0.474125010396482 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10858141 chr3:10858144 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_70820 0 0 1 0 1 SLC6A11 chr3:10858206 5'GT 10858206 Upstream 63bp
chr6 117589642 117589642 1 + G T LUSC 117589640 + 117589620 117589660 41 CAGCAAAGCACCAAGGAGCTCTGGGCCCTGGCGAGGTGAGT CAGCAAAGCACCAAGGAGCTCTTGGCCCTGGCGAGGTGAGT < 41bp 0.737060011876298 0.371816047988143 0.5719134 0.3835832 prediction 0.474120023752596 Functional Loss - VGLL2 ENSG00000170162 CDS Human protein_coding chr6:117589640 chr6:117589642 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_70821 0 0 0 0 1 VGLL2 chr6:117589654 5'GT 117589654 Upstream 13bp
chr17 44953637 44953637 1 + G A rs62071993 44953634 + 44953614 44953654 41 GTGAAGAGTGGCCTCAGGACCACGTGTAAGTGCCATGGCGT GTGAAGAGTGGCCTCAGGACCACATGTAAGTGCCATGGCGT < 41bp 0.762020037110202 0.52496112545898 0.37195295 0.16322339 prediction 0.474117823302445 Functional Loss - WNT9B ENSG00000158955 CDS Human protein_coding chr17:44953634 chr17:44953637 synonymous SNV . 0 24 hm5C_associated_SNPs_70822 0 0 0 0 1 WNT9B chr17:44953611 3'AG 44953611 Downstream 27bp
chr5 33455163 33455163 1 + C T HNSC 33455161 + 33455141 33455181 41 GATTCTATTATGACATGTACCTCGAAGAAGGGTAAGCCATC GATTCTATTATGACATGTACCTTGAAGAAGGGTAAGCCATC < 41bp 0.737057490686986 0.444104033553178 0.20331872 0.017024815 prediction 0.474114981373972 Functional Loss - TARS ENSG00000113407 CDS Human protein_coding chr5:33455161 chr5:33455163 synonymous SNV . 0 23 hm5C_associated_SNPs_70823 0 0 1 0 1 TARS chr5:33455087 3'AG 33455087 Downstream 77bp
chr3 52816039 52816039 1 + G A SKCM 52816036 + 52816016 52816056 41 TCCTTACTGAACGGGCACTTCAAGGTGACCTACGATGTCAG TCCTTACTGAACGGGCACTTCAAAGTGACCTACGATGTCAG < 41bp 0.777036365277156 0.539979309744864 0.88061273 0.38312674 prediction 0.474114111064585 Functional Loss - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52816036 chr3:52816039 synonymous SNV . 0 24 hm5C_associated_SNPs_70824 0 0 0 0 1 ITIH1 chr3:52816081 5'GT 52816081 Upstream 43bp
chr14 95034559 95034559 1 + G A UCEC 95034556 + 95034536 95034576 41 ATTTTGCCCAGGCTGGGCTTCACGGATCTGTTCTCCAAGTG ATTTTGCCCAGGCTGGGCTTCACAGATCTGTTCTCCAAGTG < 41bp 0.737056832108053 0.490282957545429 0.19476849 0.13593212 prediction 0.474113664216106 Functional Loss - SERPINA4 ENSG00000100665 CDS Human protein_coding chr14:95034556 chr14:95034559 synonymous SNV . 0 24 hm5C_associated_SNPs_70825 0 0 1 0 2 SERPINA4 chr14:95034466 3'AG 95034466 Downstream 94bp
chr14 95034559 95034559 1 + G A UCEC 95034556 + 95034536 95034576 41 ATTTTGCCCAGGCTGGGCTTCACGGATCTGTTCTCCAAGTG ATTTTGCCCAGGCTGGGCTTCACAGATCTGTTCTCCAAGTG < 41bp 0.737056832108053 0.490282957545429 0.19476849 0.13593212 prediction 0.474113664216106 Functional Loss - SERPINA4 ENSG00000100665 CDS Human protein_coding chr14:95034556 chr14:95034559 synonymous SNV . 0 24 hm5C_associated_SNPs_70825 0 0 1 0 2 SERPINA4 chr14:95034625 5'GT 95034625 Upstream 67bp
chr1 153004868 153004868 1 + T C LUAD 153004867 + 153004847 153004887 41 CTTGCACCCCACCCCCTCAGCTTCAGCAGCAGCAGGTGAAA CTTGCACCCCACCCCCTCAGCCTCAGCAGCAGCAGGTGAAA < 41bp 0.73705505111278 0.492915718298 0.038346708 0.014882833 prediction 0.47411010222556 Functional Loss - SPRR1B ENSG00000169469 CDS Human protein_coding chr1:153004867 chr1:153004868 nonsynonymous SNV 0.399 0 22 hm5C_associated_SNPs_70826 0 0 0 1 1 SPRR1B chr1:153004803 3'AG 153004803 Downstream 66bp
chr1 43827899 43827899 1 + G C CESC 43827895 + 43827875 43827915 41 ATCCTCTGGTCTCCCCATTACAAGGAGCTCATCTCAGGCCA ATCCTCTGGTCTCCCCATTACAAGCAGCTCATCTCAGGCCA < 41bp 0.841865497885177 0.604812216687539 0.600562 0.1597347 prediction 0.474106562395278 Functional Loss - CDC20 ENSG00000117399 CDS Human protein_coding chr1:43827895 chr1:43827899 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_70827 0 0 1 0 2 CDC20 chr1:43827866 3'AG 43827866 Downstream 34bp
chr1 43827899 43827899 1 + G C CESC 43827895 + 43827875 43827915 41 ATCCTCTGGTCTCCCCATTACAAGGAGCTCATCTCAGGCCA ATCCTCTGGTCTCCCCATTACAAGCAGCTCATCTCAGGCCA < 41bp 0.841865497885177 0.604812216687539 0.600562 0.1597347 prediction 0.474106562395278 Functional Loss - CDC20 ENSG00000117399 CDS Human protein_coding chr1:43827895 chr1:43827899 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_70827 0 0 1 0 2 CDC20 chr1:43827983 5'GT 43827983 Upstream 85bp
chr19 7532188 7532188 1 + G A UCEC 7532185 + 7532165 7532205 41 GCAGTTCCGGCTGCAGTCGACGCGTGGGAACCTGCTGCTGG GCAGTTCCGGCTGCAGTCGACGCATGGGAACCTGCTGCTGG < 41bp 0.737049646062632 0.495916023168903 0.84001184 0.77030075 prediction 0.474099292125263 Functional Loss - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7532185 chr19:7532188 nonsynonymous SNV 0.993 0 24 hm5C_associated_SNPs_70832 0 0 1 0 2 ARHGEF18 chr19:7532100 3'AG 7532100 Downstream 89bp
chr19 7532188 7532188 1 + G A UCEC 7532185 + 7532165 7532205 41 GCAGTTCCGGCTGCAGTCGACGCGTGGGAACCTGCTGCTGG GCAGTTCCGGCTGCAGTCGACGCATGGGAACCTGCTGCTGG < 41bp 0.737049646062632 0.495916023168903 0.84001184 0.77030075 prediction 0.474099292125263 Functional Loss - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7532185 chr19:7532188 nonsynonymous SNV 0.993 0 24 hm5C_associated_SNPs_70832 0 0 1 0 2 ARHGEF18 chr19:7532118 3'AG 7532118 Downstream 71bp
chr10 124896633 124896633 1 + C T LUAD 124896631 + 124896611 124896651 41 CTCCGGCACAGACCGCGACTCTCCGGAGCCACTGCTCAAGG CTCCGGCACAGACCGCGACTCTTCGGAGCCACTGCTCAAGG < 41bp 0.783575216399459 0.546528791918324 0.747307 0.19268394 prediction 0.474092848962271 Functional Loss - HMX3 ENSG00000188620 CDS Human protein_coding chr10:124896631 chr10:124896633 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_70833 0 0 0 0 1 HMX3 chr10:124896574 3'AG 124896574 Downstream 60bp
chr7 77979501 77979501 1 + A T rs141872914 77979497 + 77979477 77979517 41 ATTAAAAGTGGCAAAGGACTCAGGATATTTAAGGATGAGAT ATTAAAAGTGGCAAAGGACTCAGGTTATTTAAGGATGAGAT < 41bp 0.806188759061181 0.569149845072983 0.8740876 0.6383023 prediction 0.474077827976397 Functional Loss - RPL13AP17 ENSG00000231322 ncRNA_exonic Human transcribed_processed_pseudogene chr7:77979497 chr7:77979501 . . 0 25 hm5C_associated_SNPs_70837 0 0 0 1 1 RPL13AP17 chr7:77979444 3'AG 77979444 Downstream 58bp
chr1 209929622 209929622 1 + C T rs188129944 209929620 + 209929600 209929640 41 GCCCAGGACTGGAATGCTTTCCCGAGTGGCTTGAGTTGGAG GCCCAGGACTGGAATGCTTTCCTGAGTGGCTTGAGTTGGAG < 41bp 0.752547738004691 0.515510701569426 0.2689107 0.15531272 prediction 0.47407407287053 Functional Loss - TRAF3IP3 ENSG00000009790 UTR5 Human protein_coding chr1:209929620 chr1:209929622 . . 0 23 hm5C_associated_SNPs_70838 0 0 0 0 1 TRAF3IP3 chr1:209929654 5'GT 209929654 Upstream 33bp
chr2 176988697 176988697 1 + A C LAML 176988693 + 176988673 176988713 41 GCGAACTGGATCCACGCTCGCTCCACCCGGAAAAAGCGCTG GCGAACTGGATCCACGCTCGCTCCCCCCGGAAAAAGCGCTG < 41bp 0.737034342154328 0.31286376701357 0.39794824 0.06932378 prediction 0.474068684308655 Functional Loss - HOXD9 ENSG00000128709 CDS Human protein_coding chr2:176988693 chr2:176988697 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_70841 0 0 1 0 1 HOXD9 chr2:176988662 3'AG 176988662 Downstream 36bp
chr9 37708410 37708410 1 + G A SKCM 37708407 + 37708387 37708427 41 GTCCAACAGGAGGCTCTGCTCACGGCAAGCTTTTCCCTGGT GTCCAACAGGAGGCTCTGCTCACAGCAAGCTTTTCCCTGGT < 41bp 0.752818378386518 0.515785099392549 0.5609944 0.21576521 prediction 0.474066557987938 Functional Loss - FRMPD1 ENSG00000070601 CDS Human protein_coding chr9:37708407 chr9:37708410 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_70842 0 0 0 0 2 FRMPD1 chr9:37708396 3'AG 37708396 Downstream 15bp
chr9 37708410 37708410 1 + G A SKCM 37708407 + 37708387 37708427 41 GTCCAACAGGAGGCTCTGCTCACGGCAAGCTTTTCCCTGGT GTCCAACAGGAGGCTCTGCTCACAGCAAGCTTTTCCCTGGT < 41bp 0.752818378386518 0.515785099392549 0.5609944 0.21576521 prediction 0.474066557987938 Functional Loss - FRMPD1 ENSG00000070601 CDS Human protein_coding chr9:37708407 chr9:37708410 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_70842 0 0 0 0 2 FRMPD1 chr9:37708498 5'GT 37708498 Upstream 89bp
chr8 22475212 22475212 1 + G A STAD 22475209 + 22475189 22475229 41 TTATCTTGGCCTTTCTGTAGCAGGAGCAAAGCTGGAGGATT TTATCTTGGCCTTTCTGTAGCAGAAGCAAAGCTGGAGGATT < 41bp 0.758179133793689 0.52114614905453 0.9302426 0.77234316 prediction 0.474065969478318 Functional Loss - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22475209 chr8:22475212 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_70843 0 0 1 0 2 CCAR2 chr8:22475209 3'AG 22475209 Downstream 4bp
chr8 22475212 22475212 1 + G A STAD 22475209 + 22475189 22475229 41 TTATCTTGGCCTTTCTGTAGCAGGAGCAAAGCTGGAGGATT TTATCTTGGCCTTTCTGTAGCAGAAGCAAAGCTGGAGGATT < 41bp 0.758179133793689 0.52114614905453 0.9302426 0.77234316 prediction 0.474065969478318 Functional Loss - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22475209 chr8:22475212 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_70843 0 0 1 0 2 CCAR2 chr8:22475291 5'GT 22475291 Upstream 80bp
chr11 68377432 68377432 1 + C T BLCA 68377430 + 68377410 68377450 41 GTAAAGACGCAGAGGAGTGTCCCGAGACTGCAGAGGCGAAG GTAAAGACGCAGAGGAGTGTCCTGAGACTGCAGAGGCGAAG < 41bp 0.823328225625275 0.586297360581459 0.16759014 0.22989973 prediction 0.474061730087632 Functional Loss - PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68377430 chr11:68377432 synonymous SNV . 0 23 hm5C_associated_SNPs_70846 0 0 1 0 2 PPP6R3 chr11:68377372 3'AG 68377372 Downstream 61bp
chr11 68377432 68377432 1 + C T BLCA 68377430 + 68377410 68377450 41 GTAAAGACGCAGAGGAGTGTCCCGAGACTGCAGAGGCGAAG GTAAAGACGCAGAGGAGTGTCCTGAGACTGCAGAGGCGAAG < 41bp 0.823328225625275 0.586297360581459 0.16759014 0.22989973 prediction 0.474061730087632 Functional Loss - PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68377430 chr11:68377432 synonymous SNV . 0 23 hm5C_associated_SNPs_70846 0 0 1 0 2 PPP6R3 chr11:68377491 5'GT 68377491 Upstream 60bp
chr12 31253622 31253622 1 + C T UCEC 31253620 + 31253600 31253640 41 GTGCCGGGGTGGAAGCTGAGCGCGTGGTGGAGTTTTCCTGT GTGCCGGGGTGGAAGCTGAGCGTGTGGTGGAGTTTTCCTGT < 41bp 0.778966785350473 0.541939831443772 0.37638727 0.38903466 prediction 0.474053907813401 Functional Loss - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31253620 chr12:31253622 synonymous SNV . 0 23 hm5C_associated_SNPs_70848 0 0 0 0 2 DDX11 chr12:31253569 3'AG 31253569 Downstream 54bp
chr12 31253622 31253622 1 + C T UCEC 31253620 + 31253600 31253640 41 GTGCCGGGGTGGAAGCTGAGCGCGTGGTGGAGTTTTCCTGT GTGCCGGGGTGGAAGCTGAGCGTGTGGTGGAGTTTTCCTGT < 41bp 0.778966785350473 0.541939831443772 0.37638727 0.38903466 prediction 0.474053907813401 Functional Loss - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31253620 chr12:31253622 synonymous SNV . 0 23 hm5C_associated_SNPs_70848 0 0 0 0 2 DDX11 chr12:31253641 5'GT 31253641 Upstream 20bp
chr1 26769302 26769302 1 + G T UCEC 26769299 + 26769279 26769319 41 ATTGAGAACTTCAAACGCTCCAAGAGTGAGGTAGACGGGCT ATTGAGAACTTCAAACGCTCCAATAGTGAGGTAGACGGGCT < 41bp 0.810797928441543 0.573771303979504 0.11781058 0.10068017 prediction 0.474053248924078 Functional Loss - DHDDS ENSG00000117682 CDS Human protein_coding chr1:26769299 chr1:26769302 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_70849 0 0 1 0 2 DHDDS chr1:26769222 3'AG 26769222 Downstream 81bp
chr1 26769302 26769302 1 + G T UCEC 26769299 + 26769279 26769319 41 ATTGAGAACTTCAAACGCTCCAAGAGTGAGGTAGACGGGCT ATTGAGAACTTCAAACGCTCCAATAGTGAGGTAGACGGGCT < 41bp 0.810797928441543 0.573771303979504 0.11781058 0.10068017 prediction 0.474053248924078 Functional Loss - DHDDS ENSG00000117682 CDS Human protein_coding chr1:26769299 chr1:26769302 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_70849 0 0 1 0 2 DHDDS chr1:26769364 5'GT 26769364 Upstream 63bp
chr12 57960994 57960994 1 + C T GBM 57960992 + 57960972 57961012 41 TCAAATCGTCATGTGGCTGTCACCAGTGAGTGAGGATACAA TCAAATCGTCATGTGGCTGTCATCAGTGAGTGAGGATACAA < 41bp 0.737024075355933 0.452277934379611 0.3337683 0.22142538 prediction 0.474048150711866 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57960992 chr12:57960994 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_70851 0 0 1 0 1 KIF5A chr12:57960996 5'GT 57960996 Upstream 3bp
chr4 56768534 56768534 1 + C T UCEC 56768532 + 56768512 56768552 41 TTTCTTTGAAGGTGTTGAAGCTCGCGTGGCACAGGGCATAA TTTCTTTGAAGGTGTTGAAGCTTGCGTGGCACAGGGCATAA < 41bp 0.73702406893468 0.449000770559193 0.10190037 0.058504164 prediction 0.474048137869361 Functional Loss - EXOC1 ENSG00000090989 CDS Human protein_coding chr4:56768532 chr4:56768534 nonsynonymous SNV 0.980 4 23 hm5C_associated_SNPs_70852 0 0 1 0 1 EXOC1 chr4:56768510 3'AG 56768510 Downstream 25bp
chr12 6623472 6623472 1 + C T SKCM 6623470 + 6623450 6623490 41 TACCGCCTTCTGGAGAATCCCACCATTAATCACCAGAAGAA TACCGCCTTCTGGAGAATCCCATCATTAATCACCAGAAGAA < 41bp 0.737023465088257 0.435008684240592 0.5458211 0.14714754 prediction 0.474046930176513 Functional Loss - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6623470 chr12:6623472 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_70853 0 0 1 0 2 NCAPD2 chr12:6623431 3'AG 6623431 Downstream 42bp
chr12 6623472 6623472 1 + C T SKCM 6623470 + 6623450 6623490 41 TACCGCCTTCTGGAGAATCCCACCATTAATCACCAGAAGAA TACCGCCTTCTGGAGAATCCCATCATTAATCACCAGAAGAA < 41bp 0.737023465088257 0.435008684240592 0.5458211 0.14714754 prediction 0.474046930176513 Functional Loss - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6623470 chr12:6623472 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_70853 0 0 1 0 2 NCAPD2 chr12:6623558 5'GT 6623558 Upstream 87bp
chr2 10263519 10263519 1 + T C LGG 10263518 + 10263498 10263538 41 TTTTCTCCCCCAACAGAAAACTAAAGCAGCTGCCCCCGGCG TTTTCTCCCCCAACAGAAAACCAAAGCAGCTGCCCCCGGCG < 41bp 0.749386208065448 0.512365118817768 0.48030332 0.35795844 prediction 0.474042178495359 Functional Loss - RRM2 ENSG00000171848 CDS Human protein_coding chr2:10263518 chr2:10263519 synonymous SNV . 0 22 hm5C_associated_SNPs_70855 0 0 1 0 1 RRM2 chr2:10263514 3'AG 10263514 Downstream 6bp
chr16 31373976 31373976 1 + G T LUAD 31373973 + 31373953 31373993 41 TCTGGAAAGGGGTGCAGAGCCTGGTCCTGGGGGCCCCCCGC TCTGGAAAGGGGTGCAGAGCCTGTTCCTGGGGGCCCCCCGC < 41bp 0.926691450789779 0.68967175729492 0.33013624 0.2614173 prediction 0.474039386989718 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31373973 chr16:31373976 nonsynonymous SNV 0.931 2 24 hm5C_associated_SNPs_70856 0 0 0 0 2 ITGAX chr16:31373932 3'AG 31373932 Downstream 45bp
chr16 31373976 31373976 1 + G T LUAD 31373973 + 31373953 31373993 41 TCTGGAAAGGGGTGCAGAGCCTGGTCCTGGGGGCCCCCCGC TCTGGAAAGGGGTGCAGAGCCTGTTCCTGGGGGCCCCCCGC < 41bp 0.926691450789779 0.68967175729492 0.33013624 0.2614173 prediction 0.474039386989718 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31373973 chr16:31373976 nonsynonymous SNV 0.931 2 24 hm5C_associated_SNPs_70856 0 0 0 0 2 ITGAX chr16:31374074 5'GT 31374074 Upstream 99bp
chr2 210570356 210570356 1 + C T STAD 210570354 + 210570334 210570374 41 TCTTCTCTCCCAAGACCTTCCTCCATTCTCCCTCCTCGGCG TCTTCTCTCCCAAGACCTTCCTTCATTCTCCCTCCTCGGCG < 41bp 0.737019263607744 0.434491729935781 0.94335866 0.12272346 prediction 0.474038527215488 Functional Loss - MAP2 ENSG00000078018 CDS Human protein_coding chr2:210570354 chr2:210570356 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_70857 0 0 1 0 2 MAP2 chr2:210570304 3'AG 210570304 Downstream 53bp
chr2 210570356 210570356 1 + C T STAD 210570354 + 210570334 210570374 41 TCTTCTCTCCCAAGACCTTCCTCCATTCTCCCTCCTCGGCG TCTTCTCTCCCAAGACCTTCCTTCATTCTCCCTCCTCGGCG < 41bp 0.737019263607744 0.434491729935781 0.94335866 0.12272346 prediction 0.474038527215488 Functional Loss - MAP2 ENSG00000078018 CDS Human protein_coding chr2:210570354 chr2:210570356 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_70857 0 0 1 0 2 MAP2 chr2:210570451 5'GT 210570451 Upstream 96bp
chr1 152944414 152944414 1 + G T LUAD 152944412 + 152944392 152944432 41 AGCAGCAGCAGTGCCCACCCCAGAGGGCCCAGCAGCAGCAA AGCAGCAGCAGTGCCCACCCCATAGGGCCCAGCAGCAGCAA < 41bp 0.897536858072244 0.660519693289713 0.82825595 0.32880628 prediction 0.474034329565061 Functional Loss - SPRR4 ENSG00000184148 CDS Human protein_coding chr1:152944412 chr1:152944414 nonsynonymous SNV 0.364 2 23 hm5C_associated_SNPs_70858 0 0 0 0 1 SPRR4 chr1:152944347 3'AG 152944347 Downstream 68bp
chr10 70661161 70661161 1 + G T LIHC 70661158 + 70661138 70661178 41 GTAATGCCTGGGAAACTCCTCTGGGGGGACATTATGGAGCT GTAATGCCTGGGAAACTCCTCTGTGGGGACATTATGGAGCT < 41bp 0.913794394452269 0.676777840257272 0.57413745 0.13259894 prediction 0.474033108389995 Functional Loss - DDX50 ENSG00000107625 CDS Human protein_coding chr10:70661158 chr10:70661161 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_70859 0 0 1 0 1 DDX50 chr10:70661227 5'GT 70661227 Upstream 67bp
chrX 67943669 67943669 1 + G A OV 67943666 + 67943646 67943686 41 GCATGGCACCCCATCCCTGCCGCGACTTTGTGGTGCTTCGG GCATGGCACCCCATCCCTGCCGCAACTTTGTGGTGCTTCGG < 41bp 0.756462655415219 0.519446557639028 0.19796017 0.15648371 prediction 0.474032195552383 Functional Loss - STARD8 ENSG00000130052 CDS Human protein_coding chrX:67943666 chrX:67943669 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_70860 0 0 0 0 1 STARD8 chrX:67943685 5'GT 67943685 Upstream 17bp
chr2 1520736 1520736 1 + C T ACC 1520734 + 1520714 1520754 41 GGAGGCTTCGCAGGTCTCACCTCGACGGTGATTTGCAGGTG GGAGGCTTCGCAGGTCTCACCTTGACGGTGATTTGCAGGTG < 41bp 0.834782730914564 0.597780289044694 0.8883306 0.23966566 prediction 0.474004883739739 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1520734 chr2:1520736 nonsynonymous SNV 0.222 0 23 hm5C_associated_SNPs_70865 0 0 0 0 2 TPO chr2:1520655 3'AG 1520655 Downstream 82bp
chr2 1520736 1520736 1 + C T ACC 1520734 + 1520714 1520754 41 GGAGGCTTCGCAGGTCTCACCTCGACGGTGATTTGCAGGTG GGAGGCTTCGCAGGTCTCACCTTGACGGTGATTTGCAGGTG < 41bp 0.834782730914564 0.597780289044694 0.8883306 0.23966566 prediction 0.474004883739739 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1520734 chr2:1520736 nonsynonymous SNV 0.222 0 23 hm5C_associated_SNPs_70865 0 0 0 0 2 TPO chr2:1520754 5'GT 1520754 Upstream 19bp
chr7 142637501 142637501 1 + G T LUAD 142637498 + 142637478 142637518 41 CCTCAGTGGGTGAGATGTGGCAGGTGGTGGACATGGCCCAG CCTCAGTGGGTGAGATGTGGCAGTTGGTGGACATGGCCCAG < 41bp 0.926520069567268 0.689518094430833 0.848938 0.67270994 prediction 0.47400395027287 Functional Loss - C7orf34 ENSG00000165131 CDS Human protein_coding chr7:142637498 chr7:142637501 nonsynonymous SNV 0.906 0 24 hm5C_associated_SNPs_70866 0 0 0 0 1 C7orf34 chr7:142637439 3'AG 142637439 Downstream 63bp
chr2 103040356 103040356 1 + G T PCPG 103040354 + 103040334 103040374 41 TTTGTGATTTACCAGAGCCACAGAAATCACATTTCTGCCAC TTTGTGATTTACCAGAGCCACATAAATCACATTTCTGCCAC < 41bp 0.736997658373847 0.418551726516629 0.3221984 0.20526963 prediction 0.473995316747694 Functional Loss - IL18RAP ENSG00000115607 CDS Human protein_coding chr2:103040354 chr2:103040356 nonsynonymous SNV 0.125 1 23 hm5C_associated_SNPs_70871 0 0 0 0 1 IL18RAP chr2:103040271 3'AG 103040271 Downstream 86bp
chr11 18478242 18478242 1 + G T GBM 18478239 + 18478219 18478259 41 GTTTCCAAGATGGCAACTATCAAGAGTGAACTTATTAAGAA GTTTCCAAGATGGCAACTATCAATAGTGAACTTATTAAGAA < 41bp 0.908263958047557 0.671266991164989 0.91891205 0.21137422 prediction 0.473993933765137 Functional Loss - LDHAL6A ENSG00000166800 CDS Human protein_coding chr11:18478239 chr11:18478242 nonsynonymous SNV 0.231 3 24 hm5C_associated_SNPs_70873 0 0 0 0 1 LDHAL6A chr11:18478219 3'AG 18478219 Downstream 24bp
chr16 67179309 67179309 1 + C T UCEC 67179307 + 67179287 67179327 41 GATGGTCAGACAGAAACATGCACGACCTACAGCAAGGTGAG GATGGTCAGACAGAAACATGCATGACCTACAGCAAGGTGAG < 41bp 0.736996699616216 0.456182455728171 0.31617254 0.2670762 prediction 0.473993399232432 Functional Loss - C16orf70 ENSG00000125149 CDS Human protein_coding chr16:67179307 chr16:67179309 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_70874 0 0 1 0 2 C16orf70 chr16:67179279 3'AG 67179279 Downstream 31bp
chr16 67179309 67179309 1 + C T UCEC 67179307 + 67179287 67179327 41 GATGGTCAGACAGAAACATGCACGACCTACAGCAAGGTGAG GATGGTCAGACAGAAACATGCATGACCTACAGCAAGGTGAG < 41bp 0.736996699616216 0.456182455728171 0.31617254 0.2670762 prediction 0.473993399232432 Functional Loss - C16orf70 ENSG00000125149 CDS Human protein_coding chr16:67179307 chr16:67179309 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_70874 0 0 1 0 2 C16orf70 chr16:67179322 5'GT 67179322 Upstream 14bp
chr19 41744488 41744488 1 + G A UCEC 41744485 + 41744465 41744505 41 GTACCCTGTTAGGGTACCGGCTGGCGTATCAAGGCCAGGAC GTACCCTGTTAGGGTACCGGCTGACGTATCAAGGCCAGGAC < 41bp 0.772117324688189 0.535142627530085 0.3771183 0.15828222 prediction 0.473949394316209 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41744485 chr19:41744488 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_70878 0 0 0 0 1 AXL chr19:41744514 5'GT 41744514 Upstream 27bp
chr11 993307 993307 1 + C T STAD 993305 + 993285 993325 41 CTCTTCAGGCTCCCGCGTGCCACGAGAACCTGGTCAAAGTG CTCTTCAGGCTCCCGCGTGCCATGAGAACCTGGTCAAAGTG < 41bp 0.84721107921203 0.610236480907913 0.24585223 0.22127128 prediction 0.473949196608235 Functional Loss - AP2A2 ENSG00000183020 CDS Human protein_coding chr11:993305 chr11:993307 synonymous SNV . 0 23 hm5C_associated_SNPs_70879 0 0 1 0 2 AP2A2 chr11:993284 3'AG 993284 Downstream 24bp
chr11 993307 993307 1 + C T STAD 993305 + 993285 993325 41 CTCTTCAGGCTCCCGCGTGCCACGAGAACCTGGTCAAAGTG CTCTTCAGGCTCCCGCGTGCCATGAGAACCTGGTCAAAGTG < 41bp 0.84721107921203 0.610236480907913 0.24585223 0.22127128 prediction 0.473949196608235 Functional Loss - AP2A2 ENSG00000183020 CDS Human protein_coding chr11:993305 chr11:993307 synonymous SNV . 0 23 hm5C_associated_SNPs_70879 0 0 1 0 2 AP2A2 chr11:993381 5'GT 993381 Upstream 75bp
chr15 89381953 89381953 1 + G A SKCM 89381950 + 89381930 89381970 41 CGTCCCCGCTGAGGGTCCTCCTGGGGACCTCCCTCACCATC CGTCCCCGCTGAGGGTCCTCCTGAGGACCTCCCTCACCATC < 41bp 0.736963220715995 0.497114218948863 0.40571752 0.19251096 prediction 0.47392644143199 Functional Loss - ACAN ENSG00000157766 CDS Human protein_coding chr15:89381950 chr15:89381953 nonsynonymous SNV 0.914 4 24 hm5C_associated_SNPs_70885 0 0 0 0 1 ACAN chr15:89381894 3'AG 89381894 Downstream 60bp
chr1 24829514 24829514 1 + A T rs142562037 24829510 + 24829490 24829530 41 CCACCAGGCTCCCAGAGGCCCCGCAGCTCGCGCCGTCCGGC CCACCAGGCTCCCAGAGGCCCCGCTGCTCGCGCCGTCCGGC < 41bp 0.746791165013991 0.509828477328642 0.092665404 0.0754323 prediction 0.473925375370699 Functional Loss - RCAN3 ENSG00000117602 UTR5 Human protein_coding chr1:24829510 chr1:24829514 . . 0 25 hm5C_associated_SNPs_70886 0 0 0 0 1 RCAN3 chr1:24829607 5'GT 24829607 Upstream 94bp
chr9 35853543 35853543 1 + G A UCEC 35853540 + 35853520 35853560 41 CGCCGGCACTGCTACCCACCCACGTGGCGCCGCTGGCTTTT CGCCGGCACTGCTACCCACCCACATGGCGCCGCTGGCTTTT < 41bp 0.763978978528386 0.527020913790212 0.2207101 0.1288499 prediction 0.473916129476347 Functional Loss - TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35853540 chr9:35853543 synonymous SNV . 0 24 hm5C_associated_SNPs_70888 0 0 1 0 1 TMEM8B chr9:35853502 3'AG 35853502 Downstream 42bp
chr4 146479012 146479012 1 + G T LUAD 146479009 + 146478989 146479029 41 GCTGGATTGAGATACATCTGCACGGCCCCCTCCAGTGGCTG GCTGGATTGAGATACATCTGCACTGCCCCCTCCAGTGGCTG < 41bp 0.736941108543673 0.349032960748266 0.15489438 0.11606082 prediction 0.473882217087346 Functional Loss - SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146479009 chr4:146479012 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_70891 0 0 1 0 1 SMAD1 chr4:146478943 3'AG 146478943 Downstream 70bp
chr8 17409495 17409495 1 + G A COAD 17409492 + 17409472 17409512 41 TTCTCTCTGCGCCTTGTCAACAAGGTACATTGCATCGCCTT TTCTCTCTGCGCCTTGTCAACAAAGTACATTGCATCGCCTT < 41bp 0.749475092342235 0.512534103502863 0.85859805 0.27099663 prediction 0.473881977678744 Functional Loss - SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17409492 chr8:17409495 nonsynonymous SNV 0.973 5 24 hm5C_associated_SNPs_70892 0 0 1 0 1 SLC7A2 chr8:17409495 5'GT 17409495 Upstream 1bp
chr16 1825692 1825692 1 + G A LUSC 1825689 + 1825669 1825709 41 GCCCAGTATCCCCTCAAGTGCGTGATGCCAAGGCTGAAGGG GCCCAGTATCCCCTCAAGTGCGTAATGCCAAGGCTGAAGGG < 41bp 0.73693858083486 0.489575269491766 0.8973546 0.7518811 prediction 0.473877161669719 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825689 chr16:1825692 synonymous SNV . 0 24 hm5C_associated_SNPs_70895 0 0 0 0 1 EME2 chr16:1825727 5'GT 1825727 Upstream 36bp
chr3 113330962 113330962 1 + G A SKCM 113330959 + 113330939 113330979 41 GGAAAAAATGACGTATGGTTCTGGGTCATCTTCTCTGCAAT GGAAAAAATGACGTATGGTTCTGAGTCATCTTCTCTGCAAT < 41bp 0.757784501848529 0.5208487676973 0.69651794 0.31571633 prediction 0.473871468302458 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113330959 chr3:113330962 stopgain 0.997 1 24 hm5C_associated_SNPs_70896 0 0 0 0 1 SIDT1 chr3:113330933 3'AG 113330933 Downstream 30bp
chr19 17599744 17599744 1 + G A UCEC 17599741 + 17599721 17599761 41 GACTGCCTGCCCCTGTACCACTCGGCAGGTACTACGGCCTG GACTGCCTGCCCCTGTACCACTCAGCAGGTACTACGGCCTG < 41bp 0.745252275409769 0.508318462956607 0.0569427 0.037684113 prediction 0.473867624906325 Functional Loss - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17599741 chr19:17599744 synonymous SNV . 0 24 hm5C_associated_SNPs_70897 0 0 0 0 2 SLC27A1 chr19:17599657 3'AG 17599657 Downstream 88bp
chr19 17599744 17599744 1 + G A UCEC 17599741 + 17599721 17599761 41 GACTGCCTGCCCCTGTACCACTCGGCAGGTACTACGGCCTG GACTGCCTGCCCCTGTACCACTCAGCAGGTACTACGGCCTG < 41bp 0.745252275409769 0.508318462956607 0.0569427 0.037684113 prediction 0.473867624906325 Functional Loss - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17599741 chr19:17599744 synonymous SNV . 0 24 hm5C_associated_SNPs_70897 0 0 0 0 2 SLC27A1 chr19:17599748 5'GT 17599748 Upstream 5bp
chr7 6049088 6049088 1 + G T BLCA 6049085 + 6049065 6049105 41 TGTACCGGCTCCCCAACGTGCACGGCAGGAGCTACGGCCCA TGTACCGGCTCCCCAACGTGCACTGCAGGAGCTACGGCCCA < 41bp 0.916846939120091 0.679918359973041 0.42922845 0.17160434 prediction 0.473857158294101 Functional Loss - AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6049085 chr7:6049088 nonsynonymous SNV 0.161 0 24 hm5C_associated_SNPs_70901 0 0 1 0 1 AIMP2 chr7:6049129 5'GT 6049129 Upstream 42bp
chr10 129845737 129845737 1 + G C CESC 129845736 + 129845716 129845756 41 CTCCTCCTCGTGCTCCTTCTCGCCGCCTACTTCTTCAGGTA CTCCTCCTCGTGCTCCTTCTCCCCGCCTACTTCTTCAGGTA < 41bp 0.736926833603218 0.420204665338519 0.9235773 0.7932123 prediction 0.473853667206436 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129845736 chr10:129845737 nonsynonymous SNV 0.523 1 22 hm5C_associated_SNPs_70902 0 0 0 0 2 PTPRE chr10:129845654 3'AG 129845654 Downstream 84bp
chr10 129845737 129845737 1 + G C CESC 129845736 + 129845716 129845756 41 CTCCTCCTCGTGCTCCTTCTCGCCGCCTACTTCTTCAGGTA CTCCTCCTCGTGCTCCTTCTCCCCGCCTACTTCTTCAGGTA < 41bp 0.736926833603218 0.420204665338519 0.9235773 0.7932123 prediction 0.473853667206436 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129845736 chr10:129845737 nonsynonymous SNV 0.523 1 22 hm5C_associated_SNPs_70902 0 0 0 0 2 PTPRE chr10:129845753 5'GT 129845753 Upstream 17bp
chr17 7604804 7604804 1 + G T HNSC 7604801 + 7604781 7604821 41 GCCAGCAGCAGCCGGGAGAACCCGATTCATATCTGGGACGC GCCAGCAGCAGCCGGGAGAACCCTATTCATATCTGGGACGC < 41bp 0.920923375705566 0.68399828112366 0.56462604 0.22759208 prediction 0.473850189163813 Functional Loss - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7604801 chr17:7604804 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_70905 0 0 0 0 3 WRAP53 chr17:7604745 3'AG 7604745 Downstream 60bp
chr17 7604804 7604804 1 + G T HNSC 7604801 + 7604781 7604821 41 GCCAGCAGCAGCCGGGAGAACCCGATTCATATCTGGGACGC GCCAGCAGCAGCCGGGAGAACCCTATTCATATCTGGGACGC < 41bp 0.920923375705566 0.68399828112366 0.56462604 0.22759208 prediction 0.473850189163813 Functional Loss - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7604801 chr17:7604804 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_70905 0 0 0 0 3 WRAP53 chr17:7604777 3'AG 7604777 Downstream 28bp
chr17 7604804 7604804 1 + G T HNSC 7604801 + 7604781 7604821 41 GCCAGCAGCAGCCGGGAGAACCCGATTCATATCTGGGACGC GCCAGCAGCAGCCGGGAGAACCCTATTCATATCTGGGACGC < 41bp 0.920923375705566 0.68399828112366 0.56462604 0.22759208 prediction 0.473850189163813 Functional Loss - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7604801 chr17:7604804 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_70905 0 0 0 0 3 WRAP53 chr17:7604867 5'GT 7604867 Upstream 64bp
chr15 23261385 23261385 1 + A C rs202238551 23261381 + 23261361 23261401 41 GAGAGGAGCTTGTCCAAACTCAAAAACCAGATGGGTAAGAT GAGAGGAGCTTGTCCAAACTCAAACACCAGATGGGTAAGAT < 41bp 0.736922929906644 0.318132320213037 0.55949557 0.3951771 prediction 0.473845859813288 Functional Loss - GOLGA8IP ENSG00000153666 CDS Human other chr15:23261381 chr15:23261385 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_70907 0 0 0 0 2 GOLGA8IP chr15:23261307 3'AG 23261307 Downstream 79bp
chr15 23261385 23261385 1 + A C rs202238551 23261381 + 23261361 23261401 41 GAGAGGAGCTTGTCCAAACTCAAAAACCAGATGGGTAAGAT GAGAGGAGCTTGTCCAAACTCAAACACCAGATGGGTAAGAT < 41bp 0.736922929906644 0.318132320213037 0.55949557 0.3951771 prediction 0.473845859813288 Functional Loss - GOLGA8IP ENSG00000153666 CDS Human other chr15:23261381 chr15:23261385 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_70907 0 0 0 0 2 GOLGA8IP chr15:23261394 5'GT 23261394 Upstream 10bp
chr1 1394593 1394593 1 + C T COAD 1394591 + 1394571 1394611 41 CTGAACGCCTTCCTGTACCGCACGGGCCAGCACAGCAACAA CTGAACGCCTTCCTGTACCGCATGGGCCAGCACAGCAACAA < 41bp 0.801645123412112 0.56472817519674 0.23255414 0.12317726 prediction 0.473833896430744 Functional Loss - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1394591 chr1:1394593 nonsynonymous SNV 0.000 3 23 hm5C_associated_SNPs_70908 0 0 0 0 2 ATAD3C chr1:1394541 3'AG 1394541 Downstream 53bp
chr1 1394593 1394593 1 + C T COAD 1394591 + 1394571 1394611 41 CTGAACGCCTTCCTGTACCGCACGGGCCAGCACAGCAACAA CTGAACGCCTTCCTGTACCGCATGGGCCAGCACAGCAACAA < 41bp 0.801645123412112 0.56472817519674 0.23255414 0.12317726 prediction 0.473833896430744 Functional Loss - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1394591 chr1:1394593 nonsynonymous SNV 0.000 3 23 hm5C_associated_SNPs_70908 0 0 0 0 2 ATAD3C chr1:1394611 5'GT 1394611 Upstream 19bp
chr12 6956028 6956028 1 + G T THYM 6956025 + 6956005 6956045 41 TGACGGGATGGCTGTGGCCACAGGTTCCTGGGACAGCTTCC TGACGGGATGGCTGTGGCCACAGTTTCCTGGGACAGCTTCC < 41bp 0.736912801699724 0.340248099663059 0.9059586 0.36442322 prediction 0.473825603399447 Functional Loss - CDCA3;GNB3 ENSG00000111664;ENSG00000111665 CDS Human other chr12:6956025 chr12:6956028 nonsynonymous SNV 0.963 4 24 hm5C_associated_SNPs_70910 0 0 1 0 1 CDCA3;GNB3 chr12:6955956 3'AG 6955956 Downstream 73bp
chr4 951667 951667 1 + G A rs112745939 951664 + 951644 951684 41 AGGAGAGGTTCAGCGGCAGCCTCGTGGCCGCCCTGAGTGCG AGGAGAGGTTCAGCGGCAGCCTCATGGCCGCCCTGAGTGCG < 41bp 0.737077245672921 0.500172125744413 0.5352642 0.508795 prediction 0.473810239857015 Functional Loss - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:951664 chr4:951667 nonsynonymous SNV 0.493 1 24 hm5C_associated_SNPs_70915 0 0 0 0 1 TMEM175 chr4:951612 3'AG 951612 Downstream 56bp
chr16 83941852 83941852 1 + G A COAD 83941849 + 83941829 83941869 41 GGGAGCCCCTGGTCGTTTTGCACGTGGCACTGACTGGTGAC GGGAGCCCCTGGTCGTTTTGCACATGGCACTGACTGGTGAC < 41bp 0.764213690855629 0.527313945921976 0.46579757 0.32661244 prediction 0.473799489867306 Functional Loss - MLYCD ENSG00000103150;ENSG00000260300 CDS Human other chr16:83941849 chr16:83941852 nonsynonymous SNV 0.191 5 24 hm5C_associated_SNPs_70917 0 0 1 0 1 MLYCD chr16:83941887 5'GT 83941887 Upstream 36bp
chr6 131962640 131962640 1 + G T CESC 131962637 + 131962617 131962657 41 TCATGTCACTTGGATTAGGCCTGGGGCTTGGACTCAGGAAA TCATGTCACTTGGATTAGGCCTGTGGCTTGGACTCAGGAAA < 41bp 0.73689807037629 0.345461672810033 0.41107056 0.24582478 prediction 0.47379614075258 Functional Loss - ENPP3 ENSG00000154269 CDS Human protein_coding chr6:131962637 chr6:131962640 nonsynonymous SNV 0.854 2 24 hm5C_associated_SNPs_70918 0 0 1 1 2 ENPP3 chr6:131962595 3'AG 131962595 Downstream 46bp
chr6 131962640 131962640 1 + G T CESC 131962637 + 131962617 131962657 41 TCATGTCACTTGGATTAGGCCTGGGGCTTGGACTCAGGAAA TCATGTCACTTGGATTAGGCCTGTGGCTTGGACTCAGGAAA < 41bp 0.73689807037629 0.345461672810033 0.41107056 0.24582478 prediction 0.47379614075258 Functional Loss - ENPP3 ENSG00000154269 CDS Human protein_coding chr6:131962637 chr6:131962640 nonsynonymous SNV 0.854 2 24 hm5C_associated_SNPs_70918 0 0 1 1 2 ENPP3 chr6:131962670 5'GT 131962670 Upstream 31bp
chr12 98993742 98993742 1 + G A LUSC 98993739 + 98993719 98993759 41 TCTTGATTTCCTAGATTCTACAAGGGGGTTGCTCCTCTCTG TCTTGATTTCCTAGATTCTACAAAGGGGTTGCTCCTCTCTG < 41bp 0.737492276014459 0.500595139829097 0.5385491 0.25071585 prediction 0.473794272370724 Functional Loss - SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98993739 chr12:98993742 synonymous SNV . 0 24 hm5C_associated_SNPs_70920 0 0 1 0 1 SLC25A3 chr12:98993733 3'AG 98993733 Downstream 10bp
chr6 167752274 167752274 1 + C T rs34350976 167752272 + 167752252 167752292 41 TCCCAGGCGAGGCCGCCCAACACCAACACTGGAGAAGAAGG TCCCAGGCGAGGCCGCCCAACATCAACACTGGAGAAGAAGG < 41bp 0.73689308610074 0.471269380449317 0.142481 0.12329155 prediction 0.473786172201479 Functional Loss - TTLL2 ENSG00000120440 CDS Human protein_coding chr6:167752272 chr6:167752274 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_70921 0 0 0 2 1 TTLL2 chr6:167752291 5'GT 167752291 Upstream 18bp
chr18 60021742 60021742 1 + G A rs145242277 60021739 + 60021719 60021759 41 TGCCGCCGCAACACCGAGTGCGCGCCGGGCCTGGGCGCCCA TGCCGCCGCAACACCGAGTGCGCACCGGGCCTGGGCGCCCA < 41bp 0.736892587275956 0.487729298366042 0.24638578 0.19641751 prediction 0.473785174551913 Functional Loss - TNFRSF11A ENSG00000141655 CDS Human protein_coding chr18:60021739 chr18:60021742 synonymous SNV . 0 24 hm5C_associated_SNPs_70922 2 0 0 0 1 TNFRSF11A chr18:60021767 5'GT 60021767 Upstream 26bp
chr9 35800723 35800723 1 + G A UCEC 35800720 + 35800700 35800740 41 TTACAGCCTGCAGCCCACTACTCGGGAGCTGAGAAGCAGAT TTACAGCCTGCAGCCCACTACTCAGGAGCTGAGAAGCAGAT < 41bp 0.738892724128721 0.502000334892309 0.38664916 0.25423655 prediction 0.473784778472824 Functional Loss - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35800720 chr9:35800723 synonymous SNV . 0 24 hm5C_associated_SNPs_70923 0 0 0 0 1 NPR2 chr9:35800706 3'AG 35800706 Downstream 18bp
chr5 1816018 1816018 1 + G T UCEC 1816016 + 1815996 1816036 41 ACTGTGGGCTCCAGTTCAGACAGCACCACCACTAGAGCGTG ACTGTGGGCTCCAGTTCAGACATCACCACCACTAGAGCGTG < 41bp 0.887816707981427 0.650925467589965 0.13413137 0.04304412 prediction 0.473782480782926 Functional Loss - NDUFS6 ENSG00000145494 CDS Human protein_coding chr5:1816016 chr5:1816018 nonsynonymous SNV 0.281 1 23 hm5C_associated_SNPs_70924 0 0 1 0 1 NDUFS6 chr5:1815965 3'AG 1815965 Downstream 54bp
chr19 54403952 54403952 1 + C T LUAD 54403950 + 54403930 54403970 41 TGTGTAAGGAGAACGTCTTCCCCGGGACGACAACCCGCACC TGTGTAAGGAGAACGTCTTCCCTGGGACGACAACCCGCACC < 41bp 0.736889341174738 0.470611323354028 0.12232947 0.1732195 prediction 0.473778682349476 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403950 chr19:54403952 synonymous SNV . 0 23 hm5C_associated_SNPs_70927 0 0 0 0 2 PRKCG chr19:54403865 3'AG 54403865 Downstream 88bp
chr19 54403952 54403952 1 + C T LUAD 54403950 + 54403930 54403970 41 TGTGTAAGGAGAACGTCTTCCCCGGGACGACAACCCGCACC TGTGTAAGGAGAACGTCTTCCCTGGGACGACAACCCGCACC < 41bp 0.736889341174738 0.470611323354028 0.12232947 0.1732195 prediction 0.473778682349476 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403950 chr19:54403952 synonymous SNV . 0 23 hm5C_associated_SNPs_70927 0 0 0 0 2 PRKCG chr19:54404003 5'GT 54404003 Upstream 52bp
chr19 54403953 54403953 1 + G T LUSC 54403950 + 54403930 54403970 41 TGTGTAAGGAGAACGTCTTCCCCGGGACGACAACCCGCACC TGTGTAAGGAGAACGTCTTCCCCTGGACGACAACCCGCACC < 41bp 0.736889341174738 0.339759504641029 0.12232947 0.03460589 prediction 0.473778682349476 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403950 chr19:54403953 nonsynonymous SNV 0.295 3 24 hm5C_associated_SNPs_70928 0 0 0 0 2 PRKCG chr19:54403865 3'AG 54403865 Downstream 89bp
chr19 54403953 54403953 1 + G T LUSC 54403950 + 54403930 54403970 41 TGTGTAAGGAGAACGTCTTCCCCGGGACGACAACCCGCACC TGTGTAAGGAGAACGTCTTCCCCTGGACGACAACCCGCACC < 41bp 0.736889341174738 0.339759504641029 0.12232947 0.03460589 prediction 0.473778682349476 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403950 chr19:54403953 nonsynonymous SNV 0.295 3 24 hm5C_associated_SNPs_70928 0 0 0 0 2 PRKCG chr19:54404003 5'GT 54404003 Upstream 51bp
chr14 76964573 76964573 1 + G A LUSC 76964570 + 76964550 76964590 41 CCTGCAGATTCCATGTACATCGAGGATCTAGAGGCTGTCCA CCTGCAGATTCCATGTACATCGAAGATCTAGAGGCTGTCCA < 41bp 0.736883201963944 0.499551249422734 0.38296768 0.13036123 prediction 0.473766403927889 Functional Loss - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76964570 chr14:76964573 synonymous SNV . 0 24 hm5C_associated_SNPs_70929 0 0 1 0 1 ESRRB chr14:76964557 3'AG 76964557 Downstream 17bp
chr21 33671345 33671345 1 + G T UCEC 33671343 + 33671323 33671363 41 ATGAATACTACCTGGACTATCTGGACCTCATTCCCGTGGAC ATGAATACTACCTGGACTATCTTGACCTCATTCCCGTGGAC < 41bp 0.886348027993087 0.649475712443622 0.8108295 0.38847512 prediction 0.47374463109893 Functional Loss - MRAP ENSG00000170262 CDS Human protein_coding chr21:33671343 chr21:33671345 synonymous SNV . 0 23 hm5C_associated_SNPs_70932 0 0 0 0 2 MRAP chr21:33671273 3'AG 33671273 Downstream 73bp
chr21 33671345 33671345 1 + G T UCEC 33671343 + 33671323 33671363 41 ATGAATACTACCTGGACTATCTGGACCTCATTCCCGTGGAC ATGAATACTACCTGGACTATCTTGACCTCATTCCCGTGGAC < 41bp 0.886348027993087 0.649475712443622 0.8108295 0.38847512 prediction 0.47374463109893 Functional Loss - MRAP ENSG00000170262 CDS Human protein_coding chr21:33671343 chr21:33671345 synonymous SNV . 0 23 hm5C_associated_SNPs_70932 0 0 0 0 2 MRAP chr21:33671388 5'GT 33671388 Upstream 44bp
chr1 23240208 23240208 1 + C T rs375096051 23240206 + 23240186 23240226 41 AAGAACCAAGCGGTGCCAGCCACGAGACGTCACCAAGAAAA AAGAACCAAGCGGTGCCAGCCATGAGACGTCACCAAGAAAA < 41bp 0.803412995450244 0.566541170054876 0.08670795 0.11531621 prediction 0.473743650790735 Functional Loss - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23240206 chr1:23240208 stopgain 0.945 0 23 hm5C_associated_SNPs_70933 0 0 0 0 1 EPHB2 chr1:23240151 3'AG 23240151 Downstream 58bp
chr16 1545593 1545593 1 + G A SKCM 1545590 + 1545570 1545610 41 CTGCTCGGCGAGGAGGTCGTCCGGGTGCTGCAGGCGGTTGT CTGCTCGGCGAGGAGGTCGTCCGAGTGCTGCAGGCGGTTGT < 41bp 0.752975495285209 0.516105049933 0.904024 0.4933852 prediction 0.473740890704418 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1545590 chr16:1545593 synonymous SNV . 0 24 hm5C_associated_SNPs_70935 0 0 0 0 1 TELO2 chr16:1545624 5'GT 1545624 Upstream 32bp
chr1 164769111 164769111 1 + G A SKCM 164769108 + 164769088 164769128 41 GGCGGTGATGATCCTGCGTTCCCGATTTCTGGATGCGCGGT GGCGGTGATGATCCTGCGTTCCCAATTTCTGGATGCGCGGT < 41bp 0.746851927794164 0.509982780672568 0.23644051 0.22503659 prediction 0.473738294243192 Functional Loss - PBX1 ENSG00000185630 CDS Human protein_coding chr1:164769108 chr1:164769111 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_70936 0 0 0 0 1 PBX1 chr1:164769126 5'GT 164769126 Upstream 16bp
chr7 150710405 150710405 1 - C A COAD 150710407 - 150710387 150710427 41 CGGCCAAACACCCCGCGCTGCTGGGCGTTCTGCACCTCGTC CGGCCAAACACCCCGCGCTGCTTGGCGTTCTGCACCTCGTC < 41bp 0.736867347981428 0.391754861415441 0.30320737 0.07601744 prediction 0.473734695962855 Functional Loss - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150710407 chr7:150710405 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_70938 0 0 0 0 1 NOS3 chr7:150710496 3'AG 150710496 Downstream 92bp
chr22 36123200 36123200 1 + G A rs548278302 36123197 + 36123177 36123217 41 GAGCCAGACCTGTTCCAGCTCCCGGGGCAGGGCTGTTCGAG GAGCCAGACCTGTTCCAGCTCCCAGGGCAGGGCTGTTCGAG < 41bp 0.767426822851515 0.53056237790553 0.6564887 0.18964002 prediction 0.473728889891968 Functional Loss - APOL5 ENSG00000128313 CDS Human protein_coding chr22:36123197 chr22:36123200 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_70939 0 0 0 0 1 APOL5 chr22:36123241 5'GT 36123241 Upstream 42bp
chr11 134202038 134202038 1 + G C UCEC 134202037 + 134202017 134202057 41 TCTTGGGCTTCCTGGTGCTCCGCAGGTGAGAGAGAGCTTCG TCTTGGGCTTCCTGGTGCTCCCCAGGTGAGAGAGAGCTTCG < 41bp 0.736864281616542 0.426865578112269 0.2965871 0.16428709 prediction 0.473728563233084 Functional Loss - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134202037 chr11:134202038 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_70940 0 0 0 0 1 GLB1L2 chr11:134202041 5'GT 134202041 Upstream 4bp
chr16 89702704 89702704 1 + G A HNSC 89702701 + 89702681 89702721 41 GTGTACACGCCCTGCGACACCCAGAACAAAGACGCCGTGCG GTGTACACGCCCTGCGACACCCAAAACAAAGACGCCGTGCG < 41bp 0.762603503363809 0.525741846804693 0.40279448 0.37620443 prediction 0.473723313118232 Functional Loss - DPEP1 ENSG00000015413 CDS Human protein_coding chr16:89702701 chr16:89702704 synonymous SNV . 0 24 hm5C_associated_SNPs_70942 0 0 0 0 1 DPEP1 chr16:89702672 3'AG 89702672 Downstream 33bp
chr5 156890295 156890295 1 + G T UCEC 156890292 + 156890272 156890312 41 ATCGGCAGCAGCGTCATCCTCAAGAAGAAAGGCCTCTTGCG ATCGGCAGCAGCGTCATCCTCAATAAGAAAGGCCTCTTGCG < 41bp 0.925471395215752 0.688611199717259 0.6632314 0.14532447 prediction 0.473720390996986 Functional Loss - NIPAL4 ENSG00000172548 CDS Human protein_coding chr5:156890292 chr5:156890295 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_70943 0 0 0 0 1 NIPAL4 chr5:156890341 5'GT 156890341 Upstream 47bp
chr15 42138980 42138980 1 + C T COAD 42138978 + 42138958 42138998 41 CCTGCCCCTCCTGCAGCCCACTCGGGACGTGGACCTCATCC CCTGCCCCTCCTGCAGCCCACTTGGGACGTGGACCTCATCC < 41bp 0.736858014560152 0.460963665622483 0.16962448 0.32779092 prediction 0.473716029120304 Functional Loss - JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42138978 chr15:42138980 nonsynonymous SNV 0.346 4 23 hm5C_associated_SNPs_70944 0 0 0 0 1 JMJD7-PLA2G4B;PLA2G4B chr15:42139033 5'GT 42139033 Upstream 54bp
chr17 4923933 4923933 1 + G A SKCM 4923930 + 4923910 4923950 41 ACTTTGCCCAGAAGGAACTGCTGGAGCAGCAAGGCATCGAC ACTTTGCCCAGAAGGAACTGCTGAAGCAGCAAGGCATCGAC < 41bp 0.743951331342311 0.5071028198054 0.2831594 0.15701854 prediction 0.473697023073823 Functional Loss - KIF1C ENSG00000129250 CDS Human protein_coding chr17:4923930 chr17:4923933 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_70945 0 0 1 0 1 KIF1C chr17:4923973 5'GT 4923973 Upstream 41bp
chr17 4618317 4618317 1 + G A UCEC 4618314 + 4618294 4618334 41 TTCTGTTTTGTTAGGGTCTTCAAGAAGTCGAGCCCTAACTG TTCTGTTTTGTTAGGGTCTTCAAAAAGTCGAGCCCTAACTG < 41bp 0.737511871641151 0.500681229611647 0.8583205 0.3327657 prediction 0.473661284059008 Functional Loss - ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4618314 chr17:4618317 synonymous SNV . 0 24 hm5C_associated_SNPs_70946 0 0 1 0 1 ARRB2 chr17:4618338 5'GT 4618338 Upstream 22bp
chr2 109292356 109292356 1 + C T UCEC 109292354 + 109292334 109292374 41 GAAGGAGCTGACTGCCGATGCACGGGAGCTGAAAGGGGAGC GAAGGAGCTGACTGCCGATGCATGGGAGCTGAAAGGGGAGC < 41bp 0.736824443635293 0.463711521265484 0.39255637 0.4057509 prediction 0.473648887270586 Functional Loss - LIMS1 ENSG00000169756 CDS Human protein_coding chr2:109292354 chr2:109292356 nonsynonymous SNV 0.980 5 23 hm5C_associated_SNPs_70948 0 0 1 0 1 LIMS1 chr2:109292334 3'AG 109292334 Downstream 23bp
chr2 109292357 109292357 1 + G T UCEC 109292354 + 109292334 109292374 41 GAAGGAGCTGACTGCCGATGCACGGGAGCTGAAAGGGGAGC GAAGGAGCTGACTGCCGATGCACTGGAGCTGAAAGGGGAGC < 41bp 0.736824443635293 0.344921588619118 0.39255637 0.376465 prediction 0.473648887270586 Functional Loss - LIMS1 ENSG00000169756 CDS Human protein_coding chr2:109292354 chr2:109292357 nonsynonymous SNV 0.992 5 24 hm5C_associated_SNPs_70949 0 0 1 0 1 LIMS1 chr2:109292334 3'AG 109292334 Downstream 24bp
chr2 219747084 219747084 1 + G A SKCM 219747081 + 219747061 219747101 41 CACCAATTCAGGGACCAGCGCTGGAACTGCTCAAGCCTGGA CACCAATTCAGGGACCAGCGCTGAAACTGCTCAAGCCTGGA < 41bp 0.753118777441253 0.516301502862288 0.17747435 0.13044539 prediction 0.473634549157928 Functional Loss - WNT10A ENSG00000135925 CDS Human protein_coding chr2:219747081 chr2:219747084 stopgain 1.000 1 24 hm5C_associated_SNPs_70953 0 0 0 0 1 WNT10A chr2:219747145 5'GT 219747145 Upstream 62bp
chr19 14574937 14574937 1 + G A rs114585039 14574934 + 14574914 14574954 41 CAGCTCACCTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCC CAGCTCACCTCAGAAGAGCTCGCAGGATCCTCCTTCCAGCC < 41bp 0.783313906324491 0.546503418161862 0.6391419 0.28267634 prediction 0.47362097632526 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574934 chr19:14574937 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_70955 0 0 1 0 2 PKN1 chr19:14574872 3'AG 14574872 Downstream 66bp
chr19 14574937 14574937 1 + G A rs114585039 14574934 + 14574914 14574954 41 CAGCTCACCTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCC CAGCTCACCTCAGAAGAGCTCGCAGGATCCTCCTTCCAGCC < 41bp 0.783313906324491 0.546503418161862 0.6391419 0.28267634 prediction 0.47362097632526 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574934 chr19:14574937 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_70955 0 0 1 0 2 PKN1 chr19:14574965 5'GT 14574965 Upstream 29bp
chr17 40818450 40818450 1 + C T BLCA 40818448 + 40818428 40818468 41 AGGAAGTCTCCCTACCTGCCCTCGGCCCACCGGGTCAGCGG AGGAAGTCTCCCTACCTGCCCTTGGCCCACCGGGTCAGCGG < 41bp 0.779395094353299 0.542585545778225 0.11513293 0.067325324 prediction 0.473619097150148 Functional Loss - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40818448 chr17:40818450 nonsynonymous SNV 0.979 2 23 hm5C_associated_SNPs_70956 0 0 0 0 1 TUBG2 chr17:40818502 5'GT 40818502 Upstream 53bp
chr8 104342280 104342280 1 + C T BRCA 104342278 + 104342258 104342298 41 AGGCAGTGTATCTGAAAGTGCGCGGAGTGAAGGAAGGTGAG AGGCAGTGTATCTGAAAGTGCGTGGAGTGAAGGAAGGTGAG < 41bp 0.736808735049352 0.47884333999176 0.2702968 0.24703747 prediction 0.473617470098703 Functional Loss - FZD6 ENSG00000164930 CDS Human protein_coding chr8:104342278 chr8:104342280 nonsynonymous SNV 0.031 2 23 hm5C_associated_SNPs_70957 0 0 1 0 1 FZD6 chr8:104342293 5'GT 104342293 Upstream 14bp
chr19 16989037 16989037 1 + C T UCEC 16989035 + 16989015 16989055 41 CCGGTGGCAGAGCGAGCAGGCGCGGGCCCTGCGCGGTGAGG CCGGTGGCAGAGCGAGCAGGCGTGGGCCCTGCGCGGTGAGG < 41bp 0.772426996323837 0.535618272895535 0.8901274 0.8652468 prediction 0.473617446856605 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16989035 chr19:16989037 nonsynonymous SNV 0.403 4 23 hm5C_associated_SNPs_70958 0 0 1 0 1 SIN3B chr19:16988994 3'AG 16988994 Downstream 44bp
chr8 143603354 143603354 1 + T C HNSC 143603353 + 143603333 143603373 41 GCACGCTGGTGGCCGCCTTCCTGCACTTCTTCTTCCTGTCC GCACGCTGGTGGCCGCCTTCCCGCACTTCTTCTTCCTGTCC < 41bp 0.782487378710501 0.545680201315407 0.096601695 0.10187158 prediction 0.473614354790187 Functional Loss - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143603353 chr8:143603354 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_70959 0 0 0 0 1 ADGRB1 chr8:143603326 3'AG 143603326 Downstream 29bp
chr9 36671152 36671152 1 + A C UCEC 36671151 + 36671131 36671171 41 GGTTCTGCCAGAGACGGGCCCAGAAGACTAAAGGTAAGCAG GGTTCTGCCAGAGACGGGCCCCGAAGACTAAAGGTAAGCAG < 41bp 0.775948457826494 0.539142612688321 0.26215523 0.2238844 prediction 0.473611690276346 Functional Loss - MELK ENSG00000165304 CDS Human protein_coding chr9:36671151 chr9:36671152 synonymous SNV . 0 22 hm5C_associated_SNPs_70960 0 0 1 0 1 MELK chr9:36671163 5'GT 36671163 Upstream 12bp
chr1 47505128 47505128 1 + G A COAD 47505125 + 47505105 47505145 41 TCTCCTGGATCCTTTACTGCCTGGCTCTGAACCCTGAGCAT TCTCCTGGATCCTTTACTGCCTGACTCTGAACCCTGAGCAT < 41bp 0.760563990644485 0.523758787232648 0.02163282 0.015036702 prediction 0.473610406823674 Functional Loss - CYP4X1 ENSG00000186377 CDS Human protein_coding chr1:47505125 chr1:47505128 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_70962 0 0 0 0 1 CYP4X1 chr1:47505204 5'GT 47505204 Upstream 77bp
chr1 22895811 22895811 1 + G A UCEC 22895808 + 22895788 22895828 41 TGCTGGACACGTCGACCATCCACGGGGACTGGGGCTGGCTC TGCTGGACACGTCGACCATCCACAGGGACTGGGGCTGGCTC < 41bp 0.775709428670383 0.538912547351888 0.5952621 0.09983349 prediction 0.473593762636989 Functional Loss - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22895808 chr1:22895811 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_70966 0 0 1 0 2 EPHA8 chr1:22895782 3'AG 22895782 Downstream 30bp
chr1 22895811 22895811 1 + G A UCEC 22895808 + 22895788 22895828 41 TGCTGGACACGTCGACCATCCACGGGGACTGGGGCTGGCTC TGCTGGACACGTCGACCATCCACAGGGACTGGGGCTGGCTC < 41bp 0.775709428670383 0.538912547351888 0.5952621 0.09983349 prediction 0.473593762636989 Functional Loss - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22895808 chr1:22895811 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_70966 0 0 1 0 2 EPHA8 chr1:22895846 5'GT 22895846 Upstream 36bp
chrX 16836904 16836904 1 + G T UCEC 16836901 + 16836881 16836921 41 TGAGCCCAGCATACTGCACGCAAGAATCAAGAGAGGAAATC TGAGCCCAGCATACTGCACGCAATAATCAAGAGAGGAAATC < 41bp 0.736794562229412 0.35332399579724 0.12894434 0.07074693 prediction 0.473589124458825 Functional Loss - TXLNG ENSG00000086712 CDS Human protein_coding chrX:16836901 chrX:16836904 stopgain 0.407 1 24 hm5C_associated_SNPs_70968 0 0 1 0 1 TXLNG chrX:16837000 5'GT 16837000 Upstream 97bp
chr2 233244934 233244934 1 + G A rs149065046 233244931 + 233244911 233244951 41 GGCCGAAAGTACATGTTTCGCATGGGAACCCCAGACCCTGA GGCCGAAAGTACATGTTTCGCATAGGAACCCCAGACCCTGA < 41bp 0.749824214953458 0.513029734536134 0.36087862 0.10466793 prediction 0.473588960834647 Functional Loss - ALPP ENSG00000163283 CDS Human protein_coding chr2:233244931 chr2:233244934 nonsynonymous SNV 0.038 1 24 hm5C_associated_SNPs_70969 0 0 1 0 2 ALPP chr2:233244896 3'AG 233244896 Downstream 39bp
chr2 233244934 233244934 1 + G A rs149065046 233244931 + 233244911 233244951 41 GGCCGAAAGTACATGTTTCGCATGGGAACCCCAGACCCTGA GGCCGAAAGTACATGTTTCGCATAGGAACCCCAGACCCTGA < 41bp 0.749824214953458 0.513029734536134 0.36087862 0.10466793 prediction 0.473588960834647 Functional Loss - ALPP ENSG00000163283 CDS Human protein_coding chr2:233244931 chr2:233244934 nonsynonymous SNV 0.038 1 24 hm5C_associated_SNPs_70969 0 0 1 0 2 ALPP chr2:233245030 5'GT 233245030 Upstream 97bp
chr22 25297822 25297822 1 + C T UCEC 25297820 + 25297800 25297840 41 CCAGAGCTGCTGGATCTGTACACGGTGAACCTGCACCGCAT CCAGAGCTGCTGGATCTGTACATGGTGAACCTGCACCGCAT < 41bp 0.817913296638847 0.581126029724501 0.7722937 0.79895914 prediction 0.473574533828693 Functional Loss - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25297820 chr22:25297822 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_70973 0 0 0 0 1 SGSM1 chr22:25297800 3'AG 25297800 Downstream 23bp
chr1 201972397 201972397 1 + G A SKCM 201972394 + 201972374 201972414 41 TTGATCGATGGCTGAATACCCCCGGCTGGCCCCCGTACCTC TTGATCGATGGCTGAATACCCCCAGCTGGCCCCCGTACCTC < 41bp 0.762241831098653 0.525456394279203 0.3189862 0.14338261 prediction 0.473570873638899 Functional Loss - RNPEP ENSG00000176393 CDS Human protein_coding chr1:201972394 chr1:201972397 nonsynonymous SNV 0.975 4 24 hm5C_associated_SNPs_70974 0 0 1 0 1 RNPEP chr1:201972365 3'AG 201972365 Downstream 33bp
chr11 10503757 10503757 1 + G A SKCM 10503754 + 10503734 10503774 41 CGCGGGCGGATACTGCACCTCCGGAAGAGGGCCTTCCAGGT CGCGGGCGGATACTGCACCTCCGAAAGAGGGCCTTCCAGGT < 41bp 0.772574846300418 0.535790692716619 0.8776548 0.88152635 prediction 0.473568307167598 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10503754 chr11:10503757 nonsynonymous SNV 0.269 1 24 hm5C_associated_SNPs_70975 0 0 0 0 1 AMPD3 chr11:10503772 5'GT 10503772 Upstream 16bp
chr21 47546150 47546150 1 + G A LUAD 47546147 + 47546127 47546167 41 GACATGGAGGACGTCCTCTGCCCGGGTGAGCGTGTGGGCGC GACATGGAGGACGTCCTCTGCCCAGGTGAGCGTGTGGGCGC < 41bp 0.742568932525743 0.505789113051638 0.34152097 0.12123409 prediction 0.473559638948209 Functional Loss - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47546147 chr21:47546150 synonymous SNV . 0 24 hm5C_associated_SNPs_70976 0 0 0 0 1 COL6A2 chr21:47546151 5'GT 47546151 Upstream 2bp
chr6 41753907 41753907 1 + C T rs138103497 41753905 + 41753885 41753925 41 GCACCGAGGCGGAGGGACAGCGCTGGCATGAGAACCACTTC GCACCGAGGCGGAGGGACAGCGTTGGCATGAGAACCACTTC < 41bp 0.77549795203509 0.538726883614978 0.30792028 0.076661795 prediction 0.473542136840222 Functional Loss - PRICKLE4 ENSG00000124593 CDS Human protein_coding chr6:41753905 chr6:41753907 synonymous SNV . 0 23 hm5C_associated_SNPs_70981 0 0 0 0 1 PRICKLE4 chr6:41753866 3'AG 41753866 Downstream 42bp
chr17 57812798 57812798 1 + T C STAD 57812797 + 57812777 57812817 41 TTACCTTGCAGTATTTTTCTCTGGAAATCCTTGTAATCTTG TTACCTTGCAGTATTTTTCTCCGGAAATCCTTGTAATCTTG < 41bp 0.762667930783602 0.525897782876383 0.2850275 0.31803113 prediction 0.473540295814438 Functional Loss - VMP1 ENSG00000062716 CDS Human protein_coding chr17:57812797 chr17:57812798 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_70982 0 0 1 0 2 VMP1 chr17:57812699 3'AG 57812699 Downstream 100bp
chr17 57812798 57812798 1 + T C STAD 57812797 + 57812777 57812817 41 TTACCTTGCAGTATTTTTCTCTGGAAATCCTTGTAATCTTG TTACCTTGCAGTATTTTTCTCCGGAAATCCTTGTAATCTTG < 41bp 0.762667930783602 0.525897782876383 0.2850275 0.31803113 prediction 0.473540295814438 Functional Loss - VMP1 ENSG00000062716 CDS Human protein_coding chr17:57812797 chr17:57812798 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_70982 0 0 1 0 2 VMP1 chr17:57812834 5'GT 57812834 Upstream 37bp
chr10 102738321 102738321 1 + G A SKCM 102738318 + 102738298 102738338 41 ACAGCCACTAGGTATGAATTCCGGAGCATTCCTGACATCCG ACAGCCACTAGGTATGAATTCCGAAGCATTCCTGACATCCG < 41bp 0.745503292799571 0.508735059224929 0.9203667 0.706043 prediction 0.473536467149283 Functional Loss - SEMA4G ENSG00000095539 CDS Human protein_coding chr10:102738318 chr10:102738321 synonymous SNV . 0 24 hm5C_associated_SNPs_70984 0 0 0 0 2 SEMA4G chr10:102738284 3'AG 102738284 Downstream 38bp
chr10 102738321 102738321 1 + G A SKCM 102738318 + 102738298 102738338 41 ACAGCCACTAGGTATGAATTCCGGAGCATTCCTGACATCCG ACAGCCACTAGGTATGAATTCCGAAGCATTCCTGACATCCG < 41bp 0.745503292799571 0.508735059224929 0.9203667 0.706043 prediction 0.473536467149283 Functional Loss - SEMA4G ENSG00000095539 CDS Human protein_coding chr10:102738318 chr10:102738321 synonymous SNV . 0 24 hm5C_associated_SNPs_70984 0 0 0 0 2 SEMA4G chr10:102738397 5'GT 102738397 Upstream 77bp
chr12 27107220 27107220 1 + G T GBM 27107217 + 27107197 27107237 41 CTCAACAAGCGAGTAGAAGCCATGAAACAGGTTTGATTTTT CTCAACAAGCGAGTAGAAGCCATTAAACAGGTTTGATTTTT < 41bp 0.736767029509655 0.374699657694502 0.15546116 0.3553242 prediction 0.473534059019309 Functional Loss - FGFR1OP2 ENSG00000111790 CDS Human protein_coding chr12:27107217 chr12:27107220 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_70986 0 0 0 0 1 FGFR1OP2 chr12:27107226 5'GT 27107226 Upstream 7bp
chr11 2939298 2939298 1 + G T LIHC 2939295 + 2939275 2939315 41 CAGACGTCCCGAGGATCTTCCTGGTGAAGGTGGCCTCCAAC CAGACGTCCCGAGGATCTTCCTGTTGAAGGTGGCCTCCAAC < 41bp 0.736762910049054 0.33438527853025 0.8864276 0.49482778 prediction 0.473525820098107 Functional Loss - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2939295 chr11:2939298 nonsynonymous SNV 0.120 0 24 hm5C_associated_SNPs_70988 0 0 1 0 2 SLC22A18 chr11:2939218 3'AG 2939218 Downstream 81bp
chr11 2939298 2939298 1 + G T LIHC 2939295 + 2939275 2939315 41 CAGACGTCCCGAGGATCTTCCTGGTGAAGGTGGCCTCCAAC CAGACGTCCCGAGGATCTTCCTGTTGAAGGTGGCCTCCAAC < 41bp 0.736762910049054 0.33438527853025 0.8864276 0.49482778 prediction 0.473525820098107 Functional Loss - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2939295 chr11:2939298 nonsynonymous SNV 0.120 0 24 hm5C_associated_SNPs_70988 0 0 1 0 2 SLC22A18 chr11:2939325 5'GT 2939325 Upstream 28bp
chr15 40565763 40565763 1 + G A UCEC 40565760 + 40565740 40565780 41 TTTCAACCGCAGGTGAAGCTCTCGGACTTCGGATTCTGTGC TTTCAACCGCAGGTGAAGCTCTCAGACTTCGGATTCTGTGC < 41bp 0.756599034440946 0.519836383317471 0.42311388 0.24288675 prediction 0.473525302246949 Functional Loss - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40565760 chr15:40565763 synonymous SNV . 0 24 hm5C_associated_SNPs_70989 0 0 0 0 2 BUB1B-PAK6;PAK6 chr15:40565673 3'AG 40565673 Downstream 91bp
chr15 40565763 40565763 1 + G A UCEC 40565760 + 40565740 40565780 41 TTTCAACCGCAGGTGAAGCTCTCGGACTTCGGATTCTGTGC TTTCAACCGCAGGTGAAGCTCTCAGACTTCGGATTCTGTGC < 41bp 0.756599034440946 0.519836383317471 0.42311388 0.24288675 prediction 0.473525302246949 Functional Loss - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40565760 chr15:40565763 synonymous SNV . 0 24 hm5C_associated_SNPs_70989 0 0 0 0 2 BUB1B-PAK6;PAK6 chr15:40565752 3'AG 40565752 Downstream 12bp
chr2 203155921 203155921 1 + A C PCPG 203155920 + 203155900 203155940 41 AGTTGAAGCAGAAGTGAAAGCAGCTGCAGAGATATCAATGG AGTTGAAGCAGAAGTGAAAGCCGCTGCAGAGATATCAATGG < 41bp 0.779603070889826 0.542863160802399 0.8893547 0.5042281 prediction 0.473479820174852 Functional Loss - NOP58 ENSG00000055044 CDS Human protein_coding chr2:203155920 chr2:203155921 synonymous SNV . 0 22 hm5C_associated_SNPs_70997 0 0 1 0 2 NOP58 chr2:203155848 3'AG 203155848 Downstream 74bp
chr2 203155921 203155921 1 + A C PCPG 203155920 + 203155900 203155940 41 AGTTGAAGCAGAAGTGAAAGCAGCTGCAGAGATATCAATGG AGTTGAAGCAGAAGTGAAAGCCGCTGCAGAGATATCAATGG < 41bp 0.779603070889826 0.542863160802399 0.8893547 0.5042281 prediction 0.473479820174852 Functional Loss - NOP58 ENSG00000055044 CDS Human protein_coding chr2:203155920 chr2:203155921 synonymous SNV . 0 22 hm5C_associated_SNPs_70997 0 0 1 0 2 NOP58 chr2:203155993 5'GT 203155993 Upstream 73bp
chr11 57313460 57313460 1 + C T rs201662089 57313458 + 57313438 57313478 41 GGTATCAGCCCCTGCTCGGCCCCGGGGGCCCCGGGCACAGA GGTATCAGCCCCTGCTCGGCCCTGGGGGCCCCGGGCACAGA < 41bp 0.736736684867861 0.466145047076459 0.5465114 0.49063665 prediction 0.473473369735721 Functional Loss - SMTNL1 ENSG00000214872 CDS Human protein_coding chr11:57313458 chr11:57313460 nonsynonymous SNV 0.579 3 23 hm5C_associated_SNPs_70998 0 0 0 0 1 SMTNL1 chr11:57313509 5'GT 57313509 Upstream 50bp
chr3 183882984 183882984 1 + G A UCEC 183882981 + 183882961 183883001 41 GCGGCGGAAGCAGAAGGTTTCTCGGATTGAGCGGGTATGGG GCGGCGGAAGCAGAAGGTTTCTCAGATTGAGCGGGTATGGG < 41bp 0.749849056980515 0.513120173347051 0.79895556 0.38358796 prediction 0.473457767266928 Functional Loss - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183882981 chr3:183882984 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_71000 0 0 1 0 2 DVL3 chr3:183882901 3'AG 183882901 Downstream 84bp
chr3 183882984 183882984 1 + G A UCEC 183882981 + 183882961 183883001 41 GCGGCGGAAGCAGAAGGTTTCTCGGATTGAGCGGGTATGGG GCGGCGGAAGCAGAAGGTTTCTCAGATTGAGCGGGTATGGG < 41bp 0.749849056980515 0.513120173347051 0.79895556 0.38358796 prediction 0.473457767266928 Functional Loss - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183882981 chr3:183882984 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_71000 0 0 1 0 2 DVL3 chr3:183882994 5'GT 183882994 Upstream 11bp
chr7 156976656 156976656 1 + C T CESC 156976654 + 156976634 156976674 41 TTACCAGTCTCTCCTGCCAGCGCGAGCTGTCACGACTCAGC TTACCAGTCTCTCCTGCCAGCGTGAGCTGTCACGACTCAGC < 41bp 0.77431829650862 0.537590850136307 0.34843075 0.39135513 prediction 0.473454892744626 Functional Loss - UBE3C ENSG00000009335 CDS Human protein_coding chr7:156976654 chr7:156976656 nonsynonymous SNV 0.086 0 23 hm5C_associated_SNPs_71001 0 0 1 0 2 UBE3C chr7:156976572 3'AG 156976572 Downstream 85bp
chr7 156976656 156976656 1 + C T CESC 156976654 + 156976634 156976674 41 TTACCAGTCTCTCCTGCCAGCGCGAGCTGTCACGACTCAGC TTACCAGTCTCTCCTGCCAGCGTGAGCTGTCACGACTCAGC < 41bp 0.77431829650862 0.537590850136307 0.34843075 0.39135513 prediction 0.473454892744626 Functional Loss - UBE3C ENSG00000009335 CDS Human protein_coding chr7:156976654 chr7:156976656 nonsynonymous SNV 0.086 0 23 hm5C_associated_SNPs_71001 0 0 1 0 2 UBE3C chr7:156976723 5'GT 156976723 Upstream 68bp
chr4 1219303 1219303 1 - G A COAD 1219305 - 1219285 1219325 41 TCTGTGGAGGAGACGGCCGACTCGACGCTGTGCCACATCCT TCTGTGGAGGAGACGGCCGACTTGACGCTGTGCCACATCCT < 41bp 0.820782166844287 0.584060135487458 0.10361746 0.10694581 prediction 0.473444062713657 Functional Loss - CTBP1 ENSG00000159692 CDS Human protein_coding chr4:1219305 chr4:1219303 nonsynonymous SNV 0.863 3 23 hm5C_associated_SNPs_71002 0 0 1 0 1 CTBP1 chr4:1219354 3'AG 1219354 Downstream 52bp
chr5 150856254 150856254 1 + T C STAD 150856253 + 150856233 150856273 41 TCTACATCAGCCTGGGGTGTCTGGGGTACCTGCAATTTGGA TCTACATCAGCCTGGGGTGTCCGGGGTACCTGCAATTTGGA < 41bp 0.736718263339714 0.486155601937323 0.8939713 0.932547 prediction 0.473436526679429 Functional Loss - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150856253 chr5:150856254 nonsynonymous SNV 0.988 4 22 hm5C_associated_SNPs_71005 0 0 1 0 1 SLC36A1 chr5:150856317 5'GT 150856317 Upstream 64bp
chr13 25272843 25272843 1 + G A SKCM 25272840 + 25272820 25272860 41 CCCCACGGCAAGCGCTTCCTCATGGTGATGAAGGGGGCCCC CCCCACGGCAAGCGCTTCCTCATAGTGATGAAGGGGGCCCC < 41bp 0.76211967923434 0.525405645626153 0.24218667 0.10454893 prediction 0.473428067216373 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25272840 chr13:25272843 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_71007 0 0 0 0 1 ATP12A chr13:25272796 3'AG 25272796 Downstream 48bp
chr1 24664242 24664242 1 + G A LUSC 24664239 + 24664219 24664259 41 CGTCACCCTGCGGACCCCAGCAGGTGGCAAAGGCCTTGCCT CGTCACCCTGCGGACCCCAGCAGATGGCAAAGGCCTTGCCT < 41bp 0.736709023733521 0.483562541855586 0.9147682 0.50329864 prediction 0.473418047467042 Functional Loss - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24664239 chr1:24664242 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_71012 0 0 0 0 1 GRHL3 chr1:24664279 5'GT 24664279 Upstream 38bp
chr6 161160173 161160173 1 + G A SKCM 161160170 + 161160150 161160190 41 TGAATCTCGAACCGCATGTTCAGGAAATAGAAGTGTCTAGG TGAATCTCGAACCGCATGTTCAGAAAATAGAAGTGTCTAGG < 41bp 0.752338381166886 0.515632144782341 0.8927328 0.47195938 prediction 0.47341247276909 Functional Loss - PLG ENSG00000122194 CDS Human protein_coding chr6:161160170 chr6:161160173 nonsynonymous SNV 0.018 1 24 hm5C_associated_SNPs_71014 0 0 0 0 2 PLG chr6:161160100 3'AG 161160100 Downstream 74bp
chr6 161160173 161160173 1 + G A SKCM 161160170 + 161160150 161160190 41 TGAATCTCGAACCGCATGTTCAGGAAATAGAAGTGTCTAGG TGAATCTCGAACCGCATGTTCAGAAAATAGAAGTGTCTAGG < 41bp 0.752338381166886 0.515632144782341 0.8927328 0.47195938 prediction 0.47341247276909 Functional Loss - PLG ENSG00000122194 CDS Human protein_coding chr6:161160170 chr6:161160173 nonsynonymous SNV 0.018 1 24 hm5C_associated_SNPs_71014 0 0 0 0 2 PLG chr6:161160240 5'GT 161160240 Upstream 68bp
chr5 121780395 121780395 1 + T C LIHC 121780394 + 121780374 121780414 41 GACCTGCATGTCGCTGGCCTCTCAAGTGGTGAAGTTAACCA GACCTGCATGTCGCTGGCCTCCCAAGTGGTGAAGTTAACCA < 41bp 0.804266029871027 0.567564439326649 0.81164026 0.36959547 prediction 0.473403181088758 Functional Loss - SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121780394 chr5:121780395 synonymous SNV . 0 22 hm5C_associated_SNPs_71016 0 0 0 1 1 SNCAIP chr5:121780427 5'GT 121780427 Upstream 33bp
chr19 7711139 7711139 1 + C T COAD 7711137 + 7711117 7711157 41 TCCCTGCCCTGCCTGTAGGGCTCGGGGACCTCCAGCCGGCT TCCCTGCCCTGCCTGTAGGGCTTGGGGACCTCCAGCCGGCT < 41bp 0.736690990460056 0.491066193485522 0.26545268 0.3445742 prediction 0.473381980920112 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7711137 chr19:7711139 nonsynonymous SNV 0.042 0 23 hm5C_associated_SNPs_71020 0 0 1 0 2 STXBP2 chr19:7711135 3'AG 7711135 Downstream 5bp
chr19 7711139 7711139 1 + C T COAD 7711137 + 7711117 7711157 41 TCCCTGCCCTGCCTGTAGGGCTCGGGGACCTCCAGCCGGCT TCCCTGCCCTGCCTGTAGGGCTTGGGGACCTCCAGCCGGCT < 41bp 0.736690990460056 0.491066193485522 0.26545268 0.3445742 prediction 0.473381980920112 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7711137 chr19:7711139 nonsynonymous SNV 0.042 0 23 hm5C_associated_SNPs_71020 0 0 1 0 2 STXBP2 chr19:7711230 5'GT 7711230 Upstream 92bp
chr3 42569500 42569500 1 + G T SARC 42569497 + 42569477 42569517 41 ACACAGGAAGCTCCACTGCACGCGGAACTACATCCACATGC ACACAGGAAGCTCCACTGCACGCTGAACTACATCCACATGC < 41bp 0.736690185299711 0.346396805292862 0.24247295 0.05975136 prediction 0.473380370599422 Functional Loss - VIPR1 ENSG00000114812 CDS Human protein_coding chr3:42569497 chr3:42569500 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_71021 0 0 0 0 1 VIPR1 chr3:42569483 3'AG 42569483 Downstream 18bp
chr4 110915953 110915953 1 + T C GBM 110915952 + 110915932 110915972 41 TTCCGTAAGAAATAGTGACTCTGAATGTCCCCTGTCCCACG TTCCGTAAGAAATAGTGACTCCGAATGTCCCCTGTCCCACG < 41bp 0.761383780292957 0.524694264438227 0.04582703 0.046591848 prediction 0.47337903170946 Functional Loss - EGF ENSG00000138798 CDS Human protein_coding chr4:110915952 chr4:110915953 synonymous SNV . 0 22 hm5C_associated_SNPs_71022 0 0 0 0 2 EGF chr4:110915889 3'AG 110915889 Downstream 65bp
chr4 110915953 110915953 1 + T C GBM 110915952 + 110915932 110915972 41 TTCCGTAAGAAATAGTGACTCTGAATGTCCCCTGTCCCACG TTCCGTAAGAAATAGTGACTCCGAATGTCCCCTGTCCCACG < 41bp 0.761383780292957 0.524694264438227 0.04582703 0.046591848 prediction 0.47337903170946 Functional Loss - EGF ENSG00000138798 CDS Human protein_coding chr4:110915952 chr4:110915953 synonymous SNV . 0 22 hm5C_associated_SNPs_71022 0 0 0 0 2 EGF chr4:110916036 5'GT 110916036 Upstream 84bp
chr15 81436058 81436058 1 + T C LIHC 81436057 + 81436037 81436077 41 AATCGTCTAAGAGGTCTTGGCTCCAGGAAGTGTACCTAACA AATCGTCTAAGAGGTCTTGGCCCCAGGAAGTGTACCTAACA < 41bp 0.824381607183504 0.587695283909725 0.9137503 0.1891438 prediction 0.473372646547557 Functional Loss - CFAP161 ENSG00000156206 CDS Human protein_coding chr15:81436057 chr15:81436058 nonsynonymous SNV 0.151 3 22 hm5C_associated_SNPs_71024 0 0 0 0 1 CFAP161 chr15:81436003 3'AG 81436003 Downstream 56bp
chr20 2381009 2381009 1 + A T UCEC 2381005 + 2380985 2381025 41 TGTCCAACTTCAACTCAGCCCACGACACAGACCAGAACCTG TGTCCAACTTCAACTCAGCCCACGTCACAGACCAGAACCTG < 41bp 0.736681909519549 0.396988067351632 0.00620234 0.01954946 prediction 0.473363819039097 Functional Loss - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2381005 chr20:2381009 nonsynonymous SNV 0.965 5 25 hm5C_associated_SNPs_71025 0 0 0 0 2 TGM6 chr20:2380952 3'AG 2380952 Downstream 58bp
chr20 2381009 2381009 1 + A T UCEC 2381005 + 2380985 2381025 41 TGTCCAACTTCAACTCAGCCCACGACACAGACCAGAACCTG TGTCCAACTTCAACTCAGCCCACGTCACAGACCAGAACCTG < 41bp 0.736681909519549 0.396988067351632 0.00620234 0.01954946 prediction 0.473363819039097 Functional Loss - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2381005 chr20:2381009 nonsynonymous SNV 0.965 5 25 hm5C_associated_SNPs_71025 0 0 0 0 2 TGM6 chr20:2381090 5'GT 2381090 Upstream 82bp
chr1 16767271 16767271 1 + G A STAD 16767268 + 16767248 16767288 41 GGCGTCGCGATGGAGGAGAGCGGGTACGAGTCGGTGCTCTG GGCGTCGCGATGGAGGAGAGCGGATACGAGTCGGTGCTCTG < 41bp 0.747483867128282 0.510802581702737 0.8798852 0.81544113 prediction 0.473362570851089 Functional Loss - NECAP2;NECAP2 ENSG00000157191;ENSG00000157191 exonic;splicing Human protein_coding chr1:16767268 chr1:16767271 synonymous SNV 0.423 0 24 hm5C_associated_SNPs_71026 0 0 1 2 1 NECAP2 chr1:16767348 5'GT 16767348 Upstream 78bp
chr17 74076850 74076850 1 + C T UCEC 74076848 + 74076828 74076868 41 TCCTCCCCAGAGCAACTGCCCTCCACAGCCATGGCGACTGC TCCTCCCCAGAGCAACTGCCCTTCACAGCCATGGCGACTGC < 41bp 0.73668091557215 0.467247215985884 0.9221693 0.07012224 prediction 0.473361831144299 Functional Loss - ZACN ENSG00000186919 CDS Human protein_coding chr17:74076848 chr17:74076850 synonymous SNV . 0 23 hm5C_associated_SNPs_71027 0 0 0 0 1 ZACN chr17:74076821 3'AG 74076821 Downstream 30bp
chrX 150844513 150844513 1 + G C SKCM 150844509 + 150844489 150844529 41 AGTCGAGGGACCTCCTGATCCACAGGCTTTCCAAGGCCCTG AGTCGAGGGACCTCCTGATCCACACGCTTTCCAAGGCCCTG < 41bp 0.736671715413064 0.441202874664981 0.16589534 0.038940728 prediction 0.473343430826127 Functional Loss - PASD1 ENSG00000166049 CDS Human protein_coding chrX:150844509 chrX:150844513 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_71030 0 0 0 0 1 PASD1 chrX:150844469 3'AG 150844469 Downstream 45bp
chr1 99470000 99470000 1 - G A rs148163708 99470002 - 99469982 99470022 41 ACTCGCTGGCCGCCGGGGTCCCCGTGCTCGTGGTAAGCCCG ACTCGCTGGCCGCCGGGGTCCCTGTGCTCGTGGTAAGCCCG < 41bp 0.737348793265892 0.500678444684045 0.036357403 0.019772619 prediction 0.473340697163694 Functional Loss - PLPPR5 ENSG00000117598 CDS Human protein_coding chr1:99470002 chr1:99470000 synonymous SNV . 0 23 hm5C_associated_SNPs_71031 0 0 0 0 1 PLPPR5 chr1:99469991 5'GT 99469991 Upstream 10bp
chr7 98985760 98985760 1 + C T COAD 98985758 + 98985738 98985778 41 GGGCCGCACATGGAAGCCCACGCTGGTCATCCTGCGGATCA GGGCCGCACATGGAAGCCCACGTTGGTCATCCTGCGGATCA < 41bp 0.804562930663095 0.56789868656215 0.16300365 0.21534973 prediction 0.47332848820189 Functional Loss - ARPC1B ENSG00000130429 CDS Human protein_coding chr7:98985758 chr7:98985760 synonymous SNV . 0 23 hm5C_associated_SNPs_71034 0 0 1 0 1 ARPC1B chr7:98985662 3'AG 98985662 Downstream 99bp
chrX 138619303 138619303 1 + C T UCEC 138619301 + 138619281 138619321 41 AAAGTGTAGTTTTGAAGAAGCACGAGAAGTTTTTGAAAACA AAAGTGTAGTTTTGAAGAAGCATGAGAAGTTTTTGAAAACA < 41bp 0.736662995866642 0.459276987044939 0.1227085 0.11051226 prediction 0.473325991733285 Functional Loss - F9 ENSG00000101981 CDS Human protein_coding chrX:138619301 chrX:138619303 stopgain 1.000 1 23 hm5C_associated_SNPs_71035 1 0 0 0 1 F9 chrX:138619332 5'GT 138619332 Upstream 30bp
chr11 65823050 65823050 1 + G T UCEC 65823048 + 65823028 65823068 41 AACATGAGCTCTTGGAGCAGCAGAAGCGGGTAATACCCCTC AACATGAGCTCTTGGAGCAGCATAAGCGGGTAATACCCCTC < 41bp 0.736659015910493 0.383948588993843 0.8788214 0.7085786 prediction 0.473318031820987 Functional Loss - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65823048 chr11:65823050 nonsynonymous SNV 0.974 2 23 hm5C_associated_SNPs_71039 0 0 1 0 3 SF3B2 chr11:65823006 3'AG 65823006 Downstream 45bp
chr11 65823050 65823050 1 + G T UCEC 65823048 + 65823028 65823068 41 AACATGAGCTCTTGGAGCAGCAGAAGCGGGTAATACCCCTC AACATGAGCTCTTGGAGCAGCATAAGCGGGTAATACCCCTC < 41bp 0.736659015910493 0.383948588993843 0.8788214 0.7085786 prediction 0.473318031820987 Functional Loss - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65823048 chr11:65823050 nonsynonymous SNV 0.974 2 23 hm5C_associated_SNPs_71039 0 0 1 0 3 SF3B2 chr11:65823009 3'AG 65823009 Downstream 42bp
chr11 65823050 65823050 1 + G T UCEC 65823048 + 65823028 65823068 41 AACATGAGCTCTTGGAGCAGCAGAAGCGGGTAATACCCCTC AACATGAGCTCTTGGAGCAGCATAAGCGGGTAATACCCCTC < 41bp 0.736659015910493 0.383948588993843 0.8788214 0.7085786 prediction 0.473318031820987 Functional Loss - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65823048 chr11:65823050 nonsynonymous SNV 0.974 2 23 hm5C_associated_SNPs_71039 0 0 1 0 3 SF3B2 chr11:65823056 5'GT 65823056 Upstream 7bp
chr1 13937005 13937005 1 + T C OV 13937004 + 13936984 13937024 41 TCAAACGTGGCCACCAGTCACTCCACGGGTAAGAAAACCAG TCAAACGTGGCCACCAGTCACCCCACGGGTAAGAAAACCAG < 41bp 0.808479190470324 0.571823379185226 0.9494549 0.095422804 prediction 0.473311622570197 Functional Loss - PDPN ENSG00000162493 CDS Human protein_coding chr1:13937004 chr1:13937005 nonsynonymous SNV 0.009 0 22 hm5C_associated_SNPs_71042 0 0 0 0 1 PDPN chr1:13937011 5'GT 13937011 Upstream 7bp
chr15 49575910 49575910 1 + G T SARC 49575908 + 49575888 49575928 41 GGTGATGGAGTGTCGGCTGGCTGCGAAGGTATGAACTTGGC GGTGATGGAGTGTCGGCTGGCTTCGAAGGTATGAACTTGGC < 41bp 0.736655385901566 0.406355335680289 0.24503934 0.2270706 prediction 0.473310771803132 Functional Loss - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49575908 chr15:49575910 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_71043 0 0 1 0 1 GALK2 chr15:49575915 5'GT 49575915 Upstream 6bp
chr13 103498673 103498673 1 + C T LUSC 103498671 + 103498651 103498691 41 GCTCCGGGCGGCAGGTCAGCCCCGAAGCGCTGGAAGGGAAG GCTCCGGGCGGCAGGTCAGCCCTGAAGCGCTGGAAGGGAAG < 41bp 0.736650846635127 0.485737096431362 0.37392938 0.27503407 prediction 0.473301693270255 Functional Loss - ERCC5 ENSG00000134899 CDS Human protein_coding chr13:103498671 chr13:103498673 synonymous SNV . 0 23 hm5C_associated_SNPs_71046 0 0 1 0 1 ERCC5 chr13:103498704 5'GT 103498704 Upstream 32bp
chr2 33586542 33586542 1 + T C rs144016941 33586541 + 33586521 33586561 41 AGGGAAAGGTTTTGTGCCTGCTGGAGAATCATCTTCTGAAG AGGGAAAGGTTTTGTGCCTGCCGGAGAATCATCTTCTGAAG < 41bp 0.748522672380644 0.511877988164425 0.41165173 0.80515456 prediction 0.473289368432438 Functional Loss - LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33586541 chr2:33586542 synonymous SNV . 0 22 hm5C_associated_SNPs_71047 0 0 1 0 2 LTBP1 chr2:33586496 3'AG 33586496 Downstream 47bp
chr2 33586542 33586542 1 + T C rs144016941 33586541 + 33586521 33586561 41 AGGGAAAGGTTTTGTGCCTGCTGGAGAATCATCTTCTGAAG AGGGAAAGGTTTTGTGCCTGCCGGAGAATCATCTTCTGAAG < 41bp 0.748522672380644 0.511877988164425 0.41165173 0.80515456 prediction 0.473289368432438 Functional Loss - LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33586541 chr2:33586542 synonymous SNV . 0 22 hm5C_associated_SNPs_71047 0 0 1 0 2 LTBP1 chr2:33586582 5'GT 33586582 Upstream 41bp
chr16 67179310 67179310 1 + G A COAD 67179307 + 67179287 67179327 41 GATGGTCAGACAGAAACATGCACGACCTACAGCAAGGTGAG GATGGTCAGACAGAAACATGCACAACCTACAGCAAGGTGAG < 41bp 0.736996699616216 0.500353380602237 0.31617254 0.10047594 prediction 0.473286638027959 Functional Loss - C16orf70 ENSG00000125149 CDS Human protein_coding chr16:67179307 chr16:67179310 synonymous SNV . 0 24 hm5C_associated_SNPs_71049 0 0 1 0 2 C16orf70 chr16:67179279 3'AG 67179279 Downstream 32bp
chr16 67179310 67179310 1 + G A COAD 67179307 + 67179287 67179327 41 GATGGTCAGACAGAAACATGCACGACCTACAGCAAGGTGAG GATGGTCAGACAGAAACATGCACAACCTACAGCAAGGTGAG < 41bp 0.736996699616216 0.500353380602237 0.31617254 0.10047594 prediction 0.473286638027959 Functional Loss - C16orf70 ENSG00000125149 CDS Human protein_coding chr16:67179307 chr16:67179310 synonymous SNV . 0 24 hm5C_associated_SNPs_71049 0 0 1 0 2 C16orf70 chr16:67179322 5'GT 67179322 Upstream 13bp
chr7 37988591 37988591 1 + G T LUSC 37988589 + 37988569 37988609 41 TTTGAAGACCAGTACTCCATCGGGGGGCCTCAGGAGCAGAT TTTGAAGACCAGTACTCCATCGTGGGGCCTCAGGAGCAGAT < 41bp 0.894941399902647 0.658302184163454 0.9622518 0.9303725 prediction 0.473278431478386 Functional Loss - EPDR1 ENSG00000086289 CDS Human protein_coding chr7:37988589 chr7:37988591 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_71050 0 0 1 0 1 EPDR1 chr7:37988650 5'GT 37988650 Upstream 60bp
chr3 121554183 121554183 1 + C T KIRC 121554181 + 121554161 121554201 41 TAGACCGTCGCGAGCGGGTTCTCAAGTTAGGGGAGAGTTTC TAGACCGTCGCGAGCGGGTTCTTAAGTTAGGGGAGAGTTTC < 41bp 0.816475930828679 0.579837689161942 0.7671224 0.5121973 prediction 0.473276483333473 Functional Loss - EAF2 ENSG00000145088 CDS Human protein_coding chr3:121554181 chr3:121554183 synonymous SNV . 0 23 hm5C_associated_SNPs_71052 0 0 0 0 1 EAF2 chr3:121554238 5'GT 121554238 Upstream 56bp
chr1 1336006 1336006 1 + C T rs111876693 1336004 + 1335984 1336024 41 GGCTGGTAGCTCAGGGATGTCTCGTCTGTGAGTTACAGCTG GGCTGGTAGCTCAGGGATGTCTTGTCTGTGAGTTACAGCTG < 41bp 0.73663751498999 0.487767282008536 0.081346005 0.038689643 prediction 0.473275029979979 Functional Loss - LOC148413 ENSG00000224870 CDS Human processed_transcript chr1:1336004 chr1:1336006 synonymous SNV . 0 23 hm5C_associated_SNPs_71053 0 0 1 0 1 LOC148413 chr1:1335985 3'AG 1335985 Downstream 22bp
chr19 51363278 51363278 1 + G A rs61736309 51363275 + 51363255 51363295 41 AATGGTGTGCTTCAAGGTATCACGTCATGGGGCAGTGAACC AATGGTGTGCTTCAAGGTATCACATCATGGGGCAGTGAACC < 41bp 0.741687989407435 0.50505221076127 0.1497865 0.16640437 prediction 0.473271557292329 Functional Loss - KLK3 ENSG00000142515 CDS Human protein_coding chr19:51363275 chr19:51363278 synonymous SNV . 0 24 hm5C_associated_SNPs_71054 0 0 0 0 1 KLK3 chr19:51363228 3'AG 51363228 Downstream 51bp
chr19 15795970 15795970 1 + G A SKCM 15795967 + 15795947 15795987 41 AGCGCTGCCGACAGGAGGTGCAAGAGCTTCTGAAGGACCGC AGCGCTGCCGACAGGAGGTGCAAAAGCTTCTGAAGGACCGC < 41bp 0.782550029730351 0.545919603157732 0.45118296 0.33708495 prediction 0.473260853145239 Functional Loss - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15795967 chr19:15795970 nonsynonymous SNV 0.753 1 24 hm5C_associated_SNPs_71057 0 0 1 0 2 CYP4F12 chr19:15795878 3'AG 15795878 Downstream 93bp
chr19 15795970 15795970 1 + G A SKCM 15795967 + 15795947 15795987 41 AGCGCTGCCGACAGGAGGTGCAAGAGCTTCTGAAGGACCGC AGCGCTGCCGACAGGAGGTGCAAAAGCTTCTGAAGGACCGC < 41bp 0.782550029730351 0.545919603157732 0.45118296 0.33708495 prediction 0.473260853145239 Functional Loss - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15795967 chr19:15795970 nonsynonymous SNV 0.753 1 24 hm5C_associated_SNPs_71057 0 0 1 0 2 CYP4F12 chr19:15796007 5'GT 15796007 Upstream 38bp
chr19 7529551 7529551 1 + G A HNSC 7529548 + 7529528 7529568 41 GCTCAGTGACAGTGACATTCCTGGGAGCTCTGAGGAATCGC GCTCAGTGACAGTGACATTCCTGAGAGCTCTGAGGAATCGC < 41bp 0.759973979026524 0.523345981161591 0.27198088 0.17315096 prediction 0.473255995729865 Functional Loss - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7529548 chr19:7529551 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_71058 0 0 1 0 1 ARHGEF18 chr19:7529576 5'GT 7529576 Upstream 26bp
chr17 43912008 43912008 1 + A T SKCM 43912004 + 43911984 43912024 41 CCACAGGTCCGTTCTGCCATCCGGAAGAGGTGGCACCGGTG CCACAGGTCCGTTCTGCCATCCGGTAGAGGTGGCACCGGTG < 41bp 0.736627761977079 0.493390684998896 0.7861151 0.41130435 prediction 0.473255523954159 Functional Loss - CRHR1;LINC02210-CRHR1 ENSG00000120088 CDS Human protein_coding chr17:43912004 chr17:43912008 stopgain 1.000 1 25 hm5C_associated_SNPs_71059 0 0 0 0 1 CRHR1;LINC02210-CRHR1 chr17:43911990 3'AG 43911990 Downstream 19bp
chrX 155234093 155234093 1 + G T LUAD 155234090 + 155234070 155234110 41 TTCACTCTGTTCCAGTTAAGCTGGACCCGCCCTCTGACTTG TTCACTCTGTTCCAGTTAAGCTGTACCCGCCCTCTGACTTG < 41bp 0.736626285881138 0.346132960642955 0.5949894 0.21410632 prediction 0.473252571762276 Functional Loss - IL9R ENSG00000124334 CDS Human protein_coding chrX:155234090 chrX:155234093 nonsynonymous SNV 0.035 2 24 hm5C_associated_SNPs_71060 0 0 0 0 1 IL9R chrX:155234085 3'AG 155234085 Downstream 9bp
chr11 85593712 85593712 1 + T C ESCA 85593711 + 85593691 85593731 41 GAAAGAGACCAGGAAAAAAACTTGAGAGGTGATTTAGGAAC GAAAGAGACCAGGAAAAAAACCTGAGAGGTGATTTAGGAAC < 41bp 0.754148648405236 0.517525087834592 0.77036893 0.8838892 prediction 0.473247121141289 Functional Loss - CCDC83 ENSG00000150676 CDS Human protein_coding chr11:85593711 chr11:85593712 synonymous SNV . 0 22 hm5C_associated_SNPs_71062 0 0 0 0 1 CCDC83 chr11:85593718 5'GT 85593718 Upstream 7bp
chr9 117087382 117087382 1 + G A rs183397033 117087379 + 117087359 117087399 41 TGGGAGAGTTCTACGAAGCTCTCGACTGCTTGCGCATTCCC TGGGAGAGTTCTACGAAGCTCTCAACTGCTTGCGCATTCCC < 41bp 0.762047191253638 0.525434149736028 0.7765126 0.44848984 prediction 0.47322608303522 Functional Loss - ORM1 ENSG00000229314 CDS Human protein_coding chr9:117087379 chr9:117087382 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_71065 0 0 1 0 2 ORM1 chr9:117087329 3'AG 117087329 Downstream 54bp
chr9 117087382 117087382 1 + G A rs183397033 117087379 + 117087359 117087399 41 TGGGAGAGTTCTACGAAGCTCTCGACTGCTTGCGCATTCCC TGGGAGAGTTCTACGAAGCTCTCAACTGCTTGCGCATTCCC < 41bp 0.762047191253638 0.525434149736028 0.7765126 0.44848984 prediction 0.47322608303522 Functional Loss - ORM1 ENSG00000229314 CDS Human protein_coding chr9:117087379 chr9:117087382 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_71065 0 0 1 0 2 ORM1 chr9:117087432 5'GT 117087432 Upstream 51bp
chr2 155555916 155555916 1 + C T UCEC 155555914 + 155555894 155555934 41 TCCATGAGGGACGGAAAACTCACGCTTATGTTCCGGGTGGG TCCATGAGGGACGGAAAACTCATGCTTATGTTCCGGGTGGG < 41bp 0.785312700496856 0.548706257333948 0.84961885 0.81293714 prediction 0.473212886325817 Functional Loss - KCNJ3 ENSG00000162989 CDS Human protein_coding chr2:155555914 chr2:155555916 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_71068 0 0 0 0 1 KCNJ3 chr2:155555989 5'GT 155555989 Upstream 74bp
chr14 52188777 52188777 1 + C T STAD 52188775 + 52188755 52188795 41 CACAGAGGACATGCTCATGTCGCGGAAGCTGAATGGACACT CACAGAGGACATGCTCATGTCGTGGAAGCTGAATGGACACT < 41bp 0.736605166741668 0.454021346830832 0.6234681 0.5476487 prediction 0.473210333483336 Functional Loss - FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52188775 chr14:52188777 nonsynonymous SNV 0.108 2 23 hm5C_associated_SNPs_71069 0 0 0 0 1 FRMD6 chr14:52188798 5'GT 52188798 Upstream 22bp
chr20 61945137 61945137 1 + C T UCEC 61945135 + 61945115 61945155 41 CCCTCCAACCTGGCCCTGGCCTCGGAGACCCCCGACAGCCT CCCTCCAACCTGGCCCTGGCCTTGGAGACCCCCGACAGCCT < 41bp 0.736594695132613 0.483851638585091 0.37386668 0.22965512 prediction 0.473189390265226 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61945135 chr20:61945137 nonsynonymous SNV 0.520 2 23 hm5C_associated_SNPs_71076 0 0 0 0 1 COL20A1 chr20:61945095 3'AG 61945095 Downstream 43bp
chr22 44532375 44532375 1 + G A PRAD 44532372 + 44532352 44532392 41 CTGCTGCATTCCAGCCACATCTCGGAGGAGCTGACCACAAC CTGCTGCATTCCAGCCACATCTCAGAGGAGCTGACCACAAC < 41bp 0.753711121201308 0.517123044295491 0.4901869 0.27105117 prediction 0.473176153811635 Functional Loss - PARVB ENSG00000188677 CDS Human protein_coding chr22:44532372 chr22:44532375 synonymous SNV . 0 24 hm5C_associated_SNPs_71078 0 0 0 0 1 PARVB chr22:44532340 3'AG 44532340 Downstream 36bp
chr8 2005572 2005572 1 + G A UCEC 2005569 + 2005549 2005589 41 ACCTGGCACGCTCCCAGGCCCGCGACAAGCTGGACAAATAC ACCTGGCACGCTCCCAGGCCCGCAACAAGCTGGACAAATAC < 41bp 0.736585838794627 0.493040224186067 0.41416436 0.061512053 prediction 0.473171677589254 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2005569 chr8:2005572 nonsynonymous SNV 0.350 0 24 hm5C_associated_SNPs_71079 0 0 0 0 1 MYOM2 chr8:2005604 5'GT 2005604 Upstream 33bp
chr20 33577634 33577634 1 + C T STAD 33577632 + 33577612 33577652 41 GCCAAGCTCTACGACAACCACGCGGGGAAGTCACCCAATTT GCCAAGCTCTACGACAACCACGTGGGGAAGTCACCCAATTT < 41bp 0.736584936400087 0.486947579006183 0.60601723 0.85769403 prediction 0.473169872800175 Functional Loss - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33577632 chr20:33577634 nonsynonymous SNV 0.872 2 23 hm5C_associated_SNPs_71080 0 0 0 0 2 MYH7B chr20:33577543 3'AG 33577543 Downstream 92bp
chr20 33577634 33577634 1 + C T STAD 33577632 + 33577612 33577652 41 GCCAAGCTCTACGACAACCACGCGGGGAAGTCACCCAATTT GCCAAGCTCTACGACAACCACGTGGGGAAGTCACCCAATTT < 41bp 0.736584936400087 0.486947579006183 0.60601723 0.85769403 prediction 0.473169872800175 Functional Loss - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33577632 chr20:33577634 nonsynonymous SNV 0.872 2 23 hm5C_associated_SNPs_71080 0 0 0 0 2 MYH7B chr20:33577722 5'GT 33577722 Upstream 89bp
chr9 27197511 27197511 1 + G T UCEC 27197509 + 27197489 27197529 41 CTACTTAACAACTTACATCCCAGGGAGCAGTACGTGGTCCG CTACTTAACAACTTACATCCCATGGAGCAGTACGTGGTCCG < 41bp 0.736582985441837 0.382718883286081 0.6335864 0.09536159 prediction 0.473165970883674 Functional Loss - TEK ENSG00000120156 CDS Human protein_coding chr9:27197509 chr9:27197511 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_71081 0 0 0 0 1 TEK chr9:27197597 5'GT 27197597 Upstream 87bp
chr19 10782177 10782177 1 + A T LUAD 10782173 + 10782153 10782193 41 AGAAGCCCACAACCGCCCTCCTGGACAAGGTGGCCGACAAC AGAAGCCCACAACCGCCCTCCTGGTCAAGGTGGCCGACAAC < 41bp 0.736576761252911 0.405260165791981 0.253016 0.11218086 prediction 0.473153522505822 Functional Loss - ILF3 ENSG00000129351 CDS Human protein_coding chr19:10782173 chr19:10782177 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_71084 0 0 1 0 1 ILF3 chr19:10782211 5'GT 10782211 Upstream 35bp
chr1 233497877 233497877 1 + G A LUAD 233497874 + 233497854 233497894 41 AGGAGGAGCTGCTAAAGCGGCGTGAGCAGCAGCTGGCAGAG AGGAGGAGCTGCTAAAGCGGCGTAAGCAGCAGCTGGCAGAG < 41bp 0.752996550136439 0.516424978530753 0.6769277 0.6408354 prediction 0.473143143211372 Functional Loss - MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233497874 chr1:233497877 nonsynonymous SNV 0.743 3 24 hm5C_associated_SNPs_71087 0 0 0 0 1 MAP3K21 chr1:233497799 3'AG 233497799 Downstream 79bp
chr8 66963831 66963831 1 + G T LUAD 66963829 + 66963809 66963849 41 ACAGCGGACTCTGTCAACAACAGGAGAAGCTCTATACGAAA ACAGCGGACTCTGTCAACAACATGAGAAGCTCTATACGAAA < 41bp 0.880691997556925 0.644120617525697 0.8738036 0.07214373 prediction 0.473142760062457 Functional Loss - DNAJC5B ENSG00000147570 CDS Human protein_coding chr8:66963829 chr8:66963831 stopgain 0.849 1 23 hm5C_associated_SNPs_71088 0 0 0 0 2 DNAJC5B chr8:66963766 3'AG 66963766 Downstream 66bp
chr8 66963831 66963831 1 + G T LUAD 66963829 + 66963809 66963849 41 ACAGCGGACTCTGTCAACAACAGGAGAAGCTCTATACGAAA ACAGCGGACTCTGTCAACAACATGAGAAGCTCTATACGAAA < 41bp 0.880691997556925 0.644120617525697 0.8738036 0.07214373 prediction 0.473142760062457 Functional Loss - DNAJC5B ENSG00000147570 CDS Human protein_coding chr8:66963829 chr8:66963831 stopgain 0.849 1 23 hm5C_associated_SNPs_71088 0 0 0 0 2 DNAJC5B chr8:66963901 5'GT 66963901 Upstream 71bp
chr5 147763543 147763543 1 + G T rs560479371 147763540 + 147763520 147763560 41 AAGTGCCTCAGCGGTAGGGGCCGGGGAAGTGTCTGTAGCGT AAGTGCCTCAGCGGTAGGGGCCGTGGAAGTGTCTGTAGCGT < 41bp 0.736570355953314 0.339489299929099 0.46985424 0.27015063 prediction 0.473140711906628 Functional Loss - FBXO38 ENSG00000145868 UTR5 Human protein_coding chr5:147763540 chr5:147763543 . . 0 24 hm5C_associated_SNPs_71089 0 0 0 0 1 FBXO38 chr5:147763602 5'GT 147763602 Upstream 60bp
chr3 38153726 38153726 1 + C T rs527482929 38153724 + 38153704 38153744 41 TTATGGAGAGCATGCTATCCCACGGGAAAGGAGCTGCTTTC TTATGGAGAGCATGCTATCCCATGGGAAAGGAGCTGCTTTC < 41bp 0.787645601669433 0.551075938379998 0.38628095 0.3502496 prediction 0.473139326578868 Functional Loss - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38153724 chr3:38153726 synonymous SNV . 0 23 hm5C_associated_SNPs_71090 0 0 0 0 1 DLEC1 chr3:38153701 3'AG 38153701 Downstream 26bp
chr19 46174559 46174559 1 + G A UCEC 46174556 + 46174536 46174576 41 CCCCCAGGCCTCGCCTGTAACGGGTCCTTCGATATGTACGT CCCCCAGGCCTCGCCTGTAACGGATCCTTCGATATGTACGT < 41bp 0.75626071831626 0.519693151505674 0.8981241 0.81585026 prediction 0.473135133621172 Functional Loss - GIPR ENSG00000010310 CDS Human protein_coding chr19:46174556 chr19:46174559 synonymous SNV . 0 24 hm5C_associated_SNPs_71091 0 0 0 0 2 GIPR chr19:46174543 3'AG 46174543 Downstream 17bp
chr19 46174559 46174559 1 + G A UCEC 46174556 + 46174536 46174576 41 CCCCCAGGCCTCGCCTGTAACGGGTCCTTCGATATGTACGT CCCCCAGGCCTCGCCTGTAACGGATCCTTCGATATGTACGT < 41bp 0.75626071831626 0.519693151505674 0.8981241 0.81585026 prediction 0.473135133621172 Functional Loss - GIPR ENSG00000010310 CDS Human protein_coding chr19:46174556 chr19:46174559 synonymous SNV . 0 24 hm5C_associated_SNPs_71091 0 0 0 0 2 GIPR chr19:46174650 5'GT 46174650 Upstream 92bp
chr1 154947386 154947386 1 + G C BLCA 154947385 + 154947365 154947405 41 ATAGAATTGGCGCATGCGTACGAGGTGCGAACGGGCAATGG ATAGAATTGGCGCATGCGTACCAGGTGCGAACGGGCAATGG < 41bp 0.736564210494204 0.433966924920461 0.8739375 0.45862672 prediction 0.473128420988407 Functional Loss - CKS1B ENSG00000173207 CDS Human protein_coding chr1:154947385 chr1:154947386 synonymous SNV . 0 22 hm5C_associated_SNPs_71092 0 0 1 2 1 CKS1B chr1:154947388 5'GT 154947388 Upstream 3bp
chr15 75093361 75093361 1 + G C LUAD 75093360 + 75093340 75093380 41 CGTCCTGCCCCAGGCAACTGCGGCATAGCAACCTGGTGCAG CGTCCTGCCCCAGGCAACTGCCGCATAGCAACCTGGTGCAG < 41bp 0.736561972444795 0.409160148132766 0.8652542 0.15797433 prediction 0.47312394488959 Functional Loss - CSK ENSG00000103653 CDS Human protein_coding chr15:75093360 chr15:75093361 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_71094 0 0 1 0 2 CSK chr15:75093353 3'AG 75093353 Downstream 9bp
chr15 75093361 75093361 1 + G C LUAD 75093360 + 75093340 75093380 41 CGTCCTGCCCCAGGCAACTGCGGCATAGCAACCTGGTGCAG CGTCCTGCCCCAGGCAACTGCCGCATAGCAACCTGGTGCAG < 41bp 0.736561972444795 0.409160148132766 0.8652542 0.15797433 prediction 0.47312394488959 Functional Loss - CSK ENSG00000103653 CDS Human protein_coding chr15:75093360 chr15:75093361 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_71094 0 0 1 0 2 CSK chr15:75093443 5'GT 75093443 Upstream 83bp
chr15 94858848 94858848 1 + G T LUAD 94858845 + 94858825 94858865 41 ACCTGAAGGAAGGCCGGAACCTGGTTGTCCGAGATCGCTGT ACCTGAAGGAAGGCCGGAACCTGTTTGTCCGAGATCGCTGT < 41bp 0.736557603090657 0.459264893966577 0.066382945 0.024010926 prediction 0.473115206181315 Functional Loss - MCTP2 ENSG00000140563 CDS Human protein_coding chr15:94858845 chr15:94858848 nonsynonymous SNV 0.955 4 24 hm5C_associated_SNPs_71095 0 0 0 0 2 MCTP2 chr15:94858758 3'AG 94858758 Downstream 91bp
chr15 94858848 94858848 1 + G T LUAD 94858845 + 94858825 94858865 41 ACCTGAAGGAAGGCCGGAACCTGGTTGTCCGAGATCGCTGT ACCTGAAGGAAGGCCGGAACCTGTTTGTCCGAGATCGCTGT < 41bp 0.736557603090657 0.459264893966577 0.066382945 0.024010926 prediction 0.473115206181315 Functional Loss - MCTP2 ENSG00000140563 CDS Human protein_coding chr15:94858845 chr15:94858848 nonsynonymous SNV 0.955 4 24 hm5C_associated_SNPs_71095 0 0 0 0 2 MCTP2 chr15:94858866 5'GT 94858866 Upstream 19bp
chrX 128901585 128901585 1 + G T UCEC 128901583 + 128901563 128901603 41 TATTCTGGGCTCCCAGTACCCAGGGAGCTACCTGACCTTTG TATTCTGGGCTCCCAGTACCCATGGAGCTACCTGACCTTTG < 41bp 0.903925582944311 0.667371052744272 0.92247164 0.5408908 prediction 0.473109060400078 Functional Loss - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128901583 chrX:128901585 nonsynonymous SNV 0.576 2 23 hm5C_associated_SNPs_71096 0 0 0 0 2 XPNPEP2 chrX:128901579 3'AG 128901579 Downstream 7bp
chrX 128901585 128901585 1 + G T UCEC 128901583 + 128901563 128901603 41 TATTCTGGGCTCCCAGTACCCAGGGAGCTACCTGACCTTTG TATTCTGGGCTCCCAGTACCCATGGAGCTACCTGACCTTTG < 41bp 0.903925582944311 0.667371052744272 0.92247164 0.5408908 prediction 0.473109060400078 Functional Loss - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128901583 chrX:128901585 nonsynonymous SNV 0.576 2 23 hm5C_associated_SNPs_71096 0 0 0 0 2 XPNPEP2 chrX:128901668 5'GT 128901668 Upstream 84bp
chr8 25337499 25337499 1 + A C LUAD 25337498 + 25337478 25337518 41 TTCGCCTGACACGTTCACAGCAGAAGTGAGCTCAGACGCAG TTCGCCTGACACGTTCACAGCCGAAGTGAGCTCAGACGCAG < 41bp 0.736552494040789 0.492914796011626 0.33412242 0.26378602 prediction 0.473104988081578 Functional Loss - CDCA2 ENSG00000184661 CDS Human protein_coding chr8:25337498 chr8:25337499 synonymous SNV . 0 22 hm5C_associated_SNPs_71097 0 0 1 0 1 CDCA2 chr8:25337429 3'AG 25337429 Downstream 71bp
chr16 55518028 55518028 1 + C T COAD 55518026 + 55518006 55518046 41 TGTGACCCCACTGCGGTTTTCTCGAATCCATGATGGAGAGG TGTGACCCCACTGCGGTTTTCTTGAATCCATGATGGAGAGG < 41bp 0.854523473207853 0.617981493482 0.76493764 0.09984866 prediction 0.473083959451706 Functional Loss - MMP2 ENSG00000087245 CDS Human protein_coding chr16:55518026 chr16:55518028 stopgain 0.970 1 23 hm5C_associated_SNPs_71098 0 0 0 0 1 MMP2 chr16:55518076 5'GT 55518076 Upstream 49bp
chr5 131607030 131607030 1 + G C SKCM 131607026 + 131607006 131607046 41 GCCAGAGGCCTCCCGCGGAGCCGGGACTGCAGAGTCGACCT GCCAGAGGCCTCCCGCGGAGCCGGCACTGCAGAGTCGACCT < 41bp 0.736540350437251 0.423338586620925 0.22053063 0.06323764 prediction 0.473080700874501 Functional Loss - PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131607026 chr5:131607030 nonsynonymous SNV 0.938 4 25 hm5C_associated_SNPs_71099 0 0 0 0 1 PDLIM4 chr5:131606996 3'AG 131606996 Downstream 35bp
chr14 24634127 24634127 1 + G A UCEC 24634124 + 24634104 24634144 41 CCGCATCTGCTGCCCAGCAACGAGTGCGTGGAGCTCTTCAG CCGCATCTGCTGCCCAGCAACGAATGCGTGGAGCTCTTCAG < 41bp 0.761695816012631 0.525155580974739 0.5434902 0.54461014 prediction 0.473080470075785 Functional Loss - IRF9 ENSG00000213928 CDS Human protein_coding chr14:24634124 chr14:24634127 synonymous SNV . 0 24 hm5C_associated_SNPs_71100 0 0 0 0 1 IRF9 chr14:24634164 5'GT 24634164 Upstream 38bp
chr22 38870608 38870608 1 + A C rs568333738 38870604 + 38870584 38870624 41 GACCTGTTCACCAACTTCATCTCCATCTACAACACAGTAAT GACCTGTTCACCAACTTCATCTCCCTCTACAACACAGTAAT < 41bp 0.736538187597622 0.290978734217084 0.9170948 0.029341042 prediction 0.473076375195245 Functional Loss - KDELR3 ENSG00000100196 CDS Human protein_coding chr22:38870604 chr22:38870608 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_71103 0 0 1 0 2 KDELR3 chr22:38870528 3'AG 38870528 Downstream 81bp
chr22 38870608 38870608 1 + A C rs568333738 38870604 + 38870584 38870624 41 GACCTGTTCACCAACTTCATCTCCATCTACAACACAGTAAT GACCTGTTCACCAACTTCATCTCCCTCTACAACACAGTAAT < 41bp 0.736538187597622 0.290978734217084 0.9170948 0.029341042 prediction 0.473076375195245 Functional Loss - KDELR3 ENSG00000100196 CDS Human protein_coding chr22:38870604 chr22:38870608 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_71103 0 0 1 0 2 KDELR3 chr22:38870628 5'GT 38870628 Upstream 21bp
chr9 135374805 135374805 1 + C T STAD 135374803 + 135374783 135374823 41 AGCAGCAGCCCACCTGCCCCCACGAGCTGACCCGGAATTAT AGCAGCAGCCCACCTGCCCCCATGAGCTGACCCGGAATTAT < 41bp 0.832789426952668 0.596252393411725 0.06654233 0.0734165 prediction 0.473074067081887 Functional Loss - CFAP77 ENSG00000188523 CDS Human protein_coding chr9:135374803 chr9:135374805 synonymous SNV . 0 23 hm5C_associated_SNPs_71104 0 0 0 0 1 CFAP77 chr9:135374759 3'AG 135374759 Downstream 47bp
chr1 15772212 15772212 1 + C T rs121909293 15772210 + 15772190 15772230 41 CAAGAAGCCGGTAGTCTACACCCGGGTGTCCGCCTACATCG CAAGAAGCCGGTAGTCTACACCTGGGTGTCCGCCTACATCG < 41bp 0.778760162433634 0.54222384941425 0.11816937 0.09577924 prediction 0.473072626038768 Functional Loss - CTRC ENSG00000162438 CDS Human protein_coding chr1:15772210 chr1:15772212 nonsynonymous SNV 0.929 5 23 hm5C_associated_SNPs_71105 2 0 0 0 1 CTRC chr1:15772244 5'GT 15772244 Upstream 33bp
chr11 47282926 47282926 1 + G T STAD 47282923 + 47282903 47282943 41 CCCAGCTCAGCCCGGAACAACTGGGCATGATCGAGAAGCTC CCCAGCTCAGCCCGGAACAACTGTGCATGATCGAGAAGCTC < 41bp 0.736532655036529 0.332183367430496 0.14466885 0.2065953 prediction 0.473065310073057 Functional Loss - NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47282923 chr11:47282926 nonsynonymous SNV 0.762 1 24 hm5C_associated_SNPs_71107 0 0 0 0 1 NR1H3 chr11:47283000 5'GT 47283000 Upstream 75bp
chr16 19481081 19481081 1 + G T LUSC 19481078 + 19481058 19481098 41 ATCACCAAGCTGATCTTTTGCTGGGACTTCACTGTCACTCA ATCACCAAGCTGATCTTTTGCTGTGACTTCACTGTCACTCA < 41bp 0.736532398552552 0.338491210832014 0.42241034 0.18470043 prediction 0.473064797105105 Functional Loss - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19481078 chr16:19481081 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_71108 0 0 0 0 1 TMC5 chr16:19481003 3'AG 19481003 Downstream 79bp
chr6 39835559 39835559 1 + G T HNSC 39835556 + 39835536 39835576 41 TGCCTCGTGCCTGGTGGCCACAAGAAGGTGCTGCAGGCCAT TGCCTCGTGCCTGGTGGCCACAATAAGGTGCTGCAGGCCAT < 41bp 0.736522674956864 0.338088834720025 0.8225355 0.22156984 prediction 0.473045349913728 Functional Loss - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39835556 chr6:39835559 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_71113 0 0 0 0 1 DAAM2 chr6:39835619 5'GT 39835619 Upstream 61bp
chr10 118203980 118203980 1 + C T UCEC 118203978 + 118203958 118203998 41 ACATCCATGCTGTAAACAATCTCCGTGTTGTTGGTGCTGAG ACATCCATGCTGTAAACAATCTTCGTGTTGTTGGTGCTGAG < 41bp 0.736522108502884 0.454998664843497 0.24514887 0.21428984 prediction 0.473044217005768 Functional Loss - PNLIPRP3 ENSG00000203837 CDS Human protein_coding chr10:118203978 chr10:118203980 synonymous SNV . 0 23 hm5C_associated_SNPs_71114 0 0 0 0 2 PNLIPRP3 chr10:118203894 3'AG 118203894 Downstream 87bp
chr10 118203980 118203980 1 + C T UCEC 118203978 + 118203958 118203998 41 ACATCCATGCTGTAAACAATCTCCGTGTTGTTGGTGCTGAG ACATCCATGCTGTAAACAATCTTCGTGTTGTTGGTGCTGAG < 41bp 0.736522108502884 0.454998664843497 0.24514887 0.21428984 prediction 0.473044217005768 Functional Loss - PNLIPRP3 ENSG00000203837 CDS Human protein_coding chr10:118203978 chr10:118203980 synonymous SNV . 0 23 hm5C_associated_SNPs_71114 0 0 0 0 2 PNLIPRP3 chr10:118204025 5'GT 118204025 Upstream 46bp
chr15 38773633 38773633 1 + G A HNSC 38773630 + 38773610 38773650 41 AGGACAAGTAGTGGCACCAGCCGGGAGAAGACCGCATGTGC AGGACAAGTAGTGGCACCAGCCGAGAGAAGACCGCATGTGC < 41bp 0.765369185611018 0.528847909974781 0.8951094 0.42919755 prediction 0.473042551272472 Functional Loss - FAM98B ENSG00000171262 CDS Human protein_coding chr15:38773630 chr15:38773633 synonymous SNV . 0 24 hm5C_associated_SNPs_71115 0 0 1 0 1 FAM98B chr15:38773660 5'GT 38773660 Upstream 28bp
chr7 143001776 143001776 1 + C T GBM 143001774 + 143001754 143001794 41 CTTTTGGTTGCAGGGACTGCCGCCATGCGGAACACCAAACG CTTTTGGTTGCAGGGACTGCCGTCATGCGGAACACCAAACG < 41bp 0.841502320915846 0.604989693997162 0.81091976 0.3473896 prediction 0.473025253837369 Functional Loss - CASP2 ENSG00000106144 CDS Human protein_coding chr7:143001774 chr7:143001776 nonsynonymous SNV 0.946 4 23 hm5C_associated_SNPs_71119 0 0 1 0 1 CASP2 chr7:143001767 3'AG 143001767 Downstream 10bp
chr5 172386880 172386880 1 + A C KIRC 172386876 + 172386856 172386896 41 CGCCCTTTGTAGAGGGTCACCATGAAGTTCAATCCCTTCGT CGCCCTTTGTAGAGGGTCACCATGCAGTTCAATCCCTTCGT < 41bp 0.779217777501585 0.542708553340731 0.12998423 0.06676036 prediction 0.473018448321709 Functional Loss - RPL26L1 ENSG00000037241 CDS Human protein_coding chr5:172386876 chr5:172386880 nonsynonymous SNV 0.953 2 25 hm5C_associated_SNPs_71120 0 0 1 0 1 RPL26L1 chr5:172386868 3'AG 172386868 Downstream 13bp
chr19 41743920 41743920 1 + G A LIHC 41743917 + 41743897 41743937 41 CCCCCAGAGGAGCCCCTCACCTCGCAAGCATCCGTGCCCCC CCCCCAGAGGAGCCCCTCACCTCACAAGCATCCGTGCCCCC < 41bp 0.736507521312231 0.489475469152579 0.21951151 0.05356422 prediction 0.473015042624462 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41743917 chr19:41743920 synonymous SNV . 0 24 hm5C_associated_SNPs_71121 0 0 0 0 1 AXL chr19:41743849 3'AG 41743849 Downstream 72bp
chr19 41743919 41743919 1 + C T UCEC 41743917 + 41743897 41743937 41 CCCCCAGAGGAGCCCCTCACCTCGCAAGCATCCGTGCCCCC CCCCCAGAGGAGCCCCTCACCTTGCAAGCATCCGTGCCCCC < 41bp 0.736507521312231 0.455937211879507 0.21951151 0.05811003 prediction 0.473015042624462 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41743917 chr19:41743919 nonsynonymous SNV 0.944 0 23 hm5C_associated_SNPs_71122 0 0 0 0 1 AXL chr19:41743849 3'AG 41743849 Downstream 71bp
chr11 63138689 63138689 1 + T C BLCA 63138688 + 63138668 63138708 41 GAATGATGGTGGGAGGCATCCTAGGCGGTCATTTATCAGAC GAATGATGGTGGGAGGCATCCCAGGCGGTCATTTATCAGAC < 41bp 0.742586116166192 0.506081260857625 0.84944487 0.8683962 prediction 0.473009710617133 Functional Loss - SLC22A9 ENSG00000149742 CDS Human protein_coding chr11:63138688 chr11:63138689 nonsynonymous SNV 0.001 3 22 hm5C_associated_SNPs_71125 0 0 0 0 2 SLC22A9 chr11:63138607 3'AG 63138607 Downstream 83bp
chr11 63138689 63138689 1 + T C BLCA 63138688 + 63138668 63138708 41 GAATGATGGTGGGAGGCATCCTAGGCGGTCATTTATCAGAC GAATGATGGTGGGAGGCATCCCAGGCGGTCATTTATCAGAC < 41bp 0.742586116166192 0.506081260857625 0.84944487 0.8683962 prediction 0.473009710617133 Functional Loss - SLC22A9 ENSG00000149742 CDS Human protein_coding chr11:63138688 chr11:63138689 nonsynonymous SNV 0.001 3 22 hm5C_associated_SNPs_71125 0 0 0 0 2 SLC22A9 chr11:63138710 5'GT 63138710 Upstream 22bp
chr20 33859556 33859556 1 + G A UCEC 33859553 + 33859533 33859573 41 TACAGCGAGGAGCGGCGGGCCACGGACCCTGGCTACCCTAA TACAGCGAGGAGCGGCGGGCCACAGACCCTGGCTACCCTAA < 41bp 0.736501789036324 0.490808379583566 0.5362362 0.2040236 prediction 0.473003578072647 Functional Loss - MMP24 ENSG00000125966 CDS Human protein_coding chr20:33859553 chr20:33859556 synonymous SNV . 0 24 hm5C_associated_SNPs_71126 0 0 0 0 1 MMP24 chr20:33859638 5'GT 33859638 Upstream 83bp
chr1 43774696 43774696 1 + A T SKCM 43774692 + 43774672 43774712 41 TCCTCAACATGGCCTCAGAACTGGAGTTCAACTTAGAGACG TCCTCAACATGGCCTCAGAACTGGTGTTCAACTTAGAGACG < 41bp 0.86574106036178 0.629244398985176 0.36533517 0.44314635 prediction 0.472993322753207 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43774692 chr1:43774696 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_71128 0 0 0 0 1 TIE1 chr1:43774657 3'AG 43774657 Downstream 40bp
chr15 97327389 97327389 1 + G A LUAD 97327386 + 97327366 97327406 41 TGTGTTCTCTTCTGCAGAACCTCGTCGCGACATTTCTCAGA TGTGTTCTCTTCTGCAGAACCTCATCGCGACATTTCTCAGA < 41bp 0.746224184919984 0.509729232616078 0.029374808 0.057345927 prediction 0.472989904607811 Functional Loss - SPATA8 ENSG00000185594 CDS Human protein_coding chr15:97327386 chr15:97327389 synonymous SNV . 0 24 hm5C_associated_SNPs_71130 0 0 0 0 1 SPATA8 chr15:97327383 3'AG 97327383 Downstream 7bp
chr12 52283170 52283170 1 + G A GBM 52283167 + 52283147 52283187 41 GCCCTGCAGGCCACGTGCCTCTAGTGAGTCTCCTGCTCAAC GCCCTGCAGGCCACGTGCCTCTAATGAGTCTCCTGCTCAAC < 41bp 0.736493330766472 0.490707602441989 0.27628404 0.16032243 prediction 0.472986661532944 Functional Loss - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52283167 chr12:52283170 nonsynonymous SNV 0.803 2 24 hm5C_associated_SNPs_71131 0 0 0 1 2 ANKRD33 chr12:52283156 3'AG 52283156 Downstream 15bp
chr12 52283170 52283170 1 + G A GBM 52283167 + 52283147 52283187 41 GCCCTGCAGGCCACGTGCCTCTAGTGAGTCTCCTGCTCAAC GCCCTGCAGGCCACGTGCCTCTAATGAGTCTCCTGCTCAAC < 41bp 0.736493330766472 0.490707602441989 0.27628404 0.16032243 prediction 0.472986661532944 Functional Loss - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52283167 chr12:52283170 nonsynonymous SNV 0.803 2 24 hm5C_associated_SNPs_71131 0 0 0 1 2 ANKRD33 chr12:52283266 5'GT 52283266 Upstream 97bp
chr17 5039115 5039115 1 + T C COAD 5039114 + 5039094 5039134 41 CTCTTGCAGGAGGTGGGCTACTGCAGGGACCTGAGCCACAT CTCTTGCAGGAGGTGGGCTACCGCAGGGACCTGAGCCACAT < 41bp 0.736479616385995 0.478304531495064 0.8813759 0.8806002 prediction 0.472959232771991 Functional Loss - USP6 ENSG00000129204 CDS Human protein_coding chr17:5039114 chr17:5039115 nonsynonymous SNV 0.554 4 22 hm5C_associated_SNPs_71137 0 0 0 0 1 USP6 chr17:5039103 3'AG 5039103 Downstream 13bp
chr15 83788397 83788397 1 + T C GBM 83788396 + 83788376 83788416 41 GGGATGGCTCTGCTCATTATCTGATGTACCTGGTGATGGTG GGGATGGCTCTGCTCATTATCCGATGTACCTGGTGATGGTG < 41bp 0.736475071037497 0.496263541182388 0.79326576 0.902946 prediction 0.472950142074994 Functional Loss - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83788396 chr15:83788397 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_71139 0 0 1 0 1 TM6SF1 chr15:83788433 5'GT 83788433 Upstream 37bp
chr8 124448738 124448738 1 + T C COAD 124448737 + 124448717 124448757 41 GTTTCAAGTGGAGGACAGAACTTCATTTATGATCTCGATAC GTTTCAAGTGGAGGACAGAACCTCATTTATGATCTCGATAC < 41bp 0.73647395811794 0.476628777016389 0.2531935 0.13029218 prediction 0.472947916235881 Functional Loss - WDYHV1 ENSG00000156795 CDS Human protein_coding chr8:124448737 chr8:124448738 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_71140 0 0 0 0 1 WDYHV1 chr8:124448693 3'AG 124448693 Downstream 46bp
chr11 71850038 71850038 1 + C T GBM 71850036 + 71850016 71850056 41 TGGAAGAAGAATGCCTGCTGCACGGCCAGCACCAGCCAGGA TGGAAGAAGAATGCCTGCTGCATGGCCAGCACCAGCCAGGA < 41bp 0.803399898479805 0.566927950624046 0.16398245 0.1615251 prediction 0.472943895711519 Functional Loss - FOLR3 ENSG00000110203 CDS Human protein_coding chr11:71850036 chr11:71850038 nonsynonymous SNV 0.787 2 23 hm5C_associated_SNPs_71141 0 0 0 0 1 FOLR3 chr11:71850007 3'AG 71850007 Downstream 32bp
chr3 183860047 183860047 1 + C T HNSC 183860045 + 183860025 183860065 41 GTGGTCGTGGGCCCAAATATCACGCTGCCTGAGGGCTCGGT GTGGTCGTGGGCCCAAATATCATGCTGCCTGAGGGCTCGGT < 41bp 0.736467246429598 0.467277641324618 0.5625751 0.7370883 prediction 0.472934492859197 Functional Loss - EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183860045 chr3:183860047 nonsynonymous SNV 0.912 1 23 hm5C_associated_SNPs_71143 0 0 1 0 1 EIF2B5 chr3:183860025 3'AG 183860025 Downstream 23bp
chr3 20156432 20156432 1 + G A COAD 20156429 + 20156409 20156449 41 AAAACTCTCCCATCTGGGATCAGGATTTTCTCTCAGCCTCT AAAACTCTCCCATCTGGGATCAGAATTTTCTCTCAGCCTCT < 41bp 0.755877061952455 0.519409866969365 0.8806455 0.40330136 prediction 0.47293438996618 Functional Loss - KAT2B ENSG00000114166 CDS Human protein_coding chr3:20156429 chr3:20156432 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_71144 0 0 1 0 2 KAT2B chr3:20156374 3'AG 20156374 Downstream 59bp
chr3 20156432 20156432 1 + G A COAD 20156429 + 20156409 20156449 41 AAAACTCTCCCATCTGGGATCAGGATTTTCTCTCAGCCTCT AAAACTCTCCCATCTGGGATCAGAATTTTCTCTCAGCCTCT < 41bp 0.755877061952455 0.519409866969365 0.8806455 0.40330136 prediction 0.47293438996618 Functional Loss - KAT2B ENSG00000114166 CDS Human protein_coding chr3:20156429 chr3:20156432 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_71144 0 0 1 0 2 KAT2B chr3:20156480 5'GT 20156480 Upstream 49bp
chr12 6624076 6624076 1 + T C HNSC 6624075 + 6624055 6624095 41 TGTGCATTTTGCTAGATCACCTGGATGGAGAAGTAGGTGGT TGTGCATTTTGCTAGATCACCCGGATGGAGAAGTAGGTGGT < 41bp 0.788293081651757 0.551825964124553 0.41599512 0.49852616 prediction 0.472934235054408 Functional Loss - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6624075 chr12:6624076 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_71145 0 0 1 0 1 NCAPD2 chr12:6624086 5'GT 6624086 Upstream 11bp
chr15 78557106 78557106 1 + A C UCS 78557102 + 78557082 78557122 41 GCCCGCCCCCCCCGCAGACACAAGATGGTGAAGGAGACCCA GCCCGCCCCCCCCGCAGACACAAGCTGGTGAAGGAGACCCA < 41bp 0.931654227421766 0.695189897258968 0.82930493 0.27560556 prediction 0.472928660325597 Functional Loss - DNAJA4 ENSG00000140403 CDS Human protein_coding chr15:78557102 chr15:78557106 nonsynonymous SNV 0.287 4 25 hm5C_associated_SNPs_71147 0 0 0 0 1 DNAJA4 chr15:78557099 3'AG 78557099 Downstream 8bp
chr15 41021022 41021022 1 + G A SKCM 41021019 + 41020999 41021039 41 ATCAGCCATGATGGTAGAATCTAGGTATGTGTTCAGTATAA ATCAGCCATGATGGTAGAATCTAAGTATGTGTTCAGTATAA < 41bp 0.738293954185872 0.501830336521685 0.23257792 0.14132485 prediction 0.472927235328374 Functional Loss - RAD51 ENSG00000051180 CDS Human protein_coding chr15:41021019 chr15:41021022 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_71148 0 0 1 4 1 RAD51 chr15:41021022 5'GT 41021022 Upstream 1bp
chr6 117043316 117043316 1 + C T PRAD 117043314 + 117043294 117043334 41 ACCTTGCTTAAATGTCCTGTCACGACTGTTGTTTAGCAGTG ACCTTGCTTAAATGTCCTGTCATGACTGTTGTTTAGCAGTG < 41bp 0.842959508950552 0.606500161179188 0.2663652 0.27004707 prediction 0.472918695542727 Functional Loss - KPNA5 ENSG00000196911 CDS Human protein_coding chr6:117043314 chr6:117043316 stopgain 0.966 1 23 hm5C_associated_SNPs_71152 0 0 1 0 1 KPNA5 chr6:117043289 3'AG 117043289 Downstream 28bp
chr9 136310084 136310084 1 + C T SKCM 136310082 + 136310062 136310102 41 AGGGGCAGATGGCCTGGAGGCTCCAGTGACTGAGGGGCCTG AGGGGCAGATGGCCTGGAGGCTTCAGTGACTGAGGGGCCTG < 41bp 0.798382077746404 0.561924628114506 0.8595661 0.22359052 prediction 0.472914899263797 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136310082 chr9:136310084 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_71153 0 0 1 0 1 ADAMTS13 chr9:136310173 5'GT 136310173 Upstream 90bp
chr19 50910593 50910593 1 + G A CESC 50910590 + 50910570 50910610 41 TTCTCCCCTCCCAGGCCATGCACGAGGGGCTGCTGATGCCC TTCTCCCCTCCCAGGCCATGCACAAGGGGCTGCTGATGCCC < 41bp 0.777721734351463 0.541268834803796 0.068181485 0.02602446 prediction 0.472905799095334 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50910590 chr19:50910593 nonsynonymous SNV 0.959 0 24 hm5C_associated_SNPs_71157 1 0 1 0 1 POLD1 chr19:50910584 3'AG 50910584 Downstream 10bp
chr15 40685423 40685423 1 + C T rs373847514 40685421 + 40685401 40685441 41 GGATGAATCATGGGATATTGCACCAAATGTAGAGGATTTCA GGATGAATCATGGGATATTGCATCAAATGTAGAGGATTTCA < 41bp 0.736448606290386 0.482575519960893 0.1374144 0.20495644 prediction 0.472897212580771 Functional Loss - KNSTRN ENSG00000128944 CDS Human protein_coding chr15:40685421 chr15:40685423 synonymous SNV . 0 23 hm5C_associated_SNPs_71160 0 0 0 0 1 KNSTRN chr15:40685394 3'AG 40685394 Downstream 30bp
chr3 49753337 49753337 1 + C T GBM 49753335 + 49753315 49753355 41 TGTGCCACCTGCTTTGACCTCTCGGTCAGCCTGCTGCGTGT TGTGCCACCTGCTTTGACCTCTTGGTCAGCCTGCTGCGTGT < 41bp 0.736447319878349 0.45055329412157 0.24782014 0.12896094 prediction 0.472894639756697 Functional Loss - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49753335 chr3:49753337 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_71161 0 0 1 1 1 RNF123 chr3:49753255 3'AG 49753255 Downstream 83bp
chr11 703075 703075 1 + C T BLCA 703073 + 703053 703093 41 TGTTGTGGGCGGACTGGGCCCTCAGCGCCACGCTCCTGGCC TGTTGTGGGCGGACTGGGCCCTTAGCGCCACGCTCCTGGCC < 41bp 0.736441808709801 0.485371528372192 0.28233767 0.11270508 prediction 0.472883617419601 Functional Loss - TMEM80 ENSG00000177042 CDS Human protein_coding chr11:703073 chr11:703075 synonymous SNV . 0 23 hm5C_associated_SNPs_71163 0 0 1 0 1 TMEM80 chr11:703146 5'GT 703146 Upstream 72bp
chr1 12819260 12819260 1 + C T LUSC 12819258 + 12819238 12819278 41 TCCAGGGGCTACCTTACAAACACCTGATCACCCACCACCAG TCCAGGGGCTACCTTACAAACATCTGATCACCCACCACCAG < 41bp 0.736441433616653 0.473564766537424 0.22364256 0.34785452 prediction 0.472882867233305 Functional Loss - C1orf158 ENSG00000157330 CDS Human protein_coding chr1:12819258 chr1:12819260 synonymous SNV . 0 23 hm5C_associated_SNPs_71164 0 0 0 0 1 C1orf158 chr1:12819243 3'AG 12819243 Downstream 18bp
chr12 6954785 6954785 1 + G A STAD 6954782 + 6954762 6954802 41 GGAGAGGCCATCTGCACGGGCTCGGATGACGCTTCCTGCCG GGAGAGGCCATCTGCACGGGCTCAGATGACGCTTCCTGCCG < 41bp 0.778791824629093 0.542351572926326 0.081130356 0.04902506 prediction 0.472880503405535 Functional Loss - GNB3 ENSG00000111664 CDS Human protein_coding chr12:6954782 chr12:6954785 synonymous SNV . 0 24 hm5C_associated_SNPs_71166 0 0 1 0 1 GNB3 chr12:6954750 3'AG 6954750 Downstream 36bp
chr11 6292324 6292324 1 + C T COAD 6292322 + 6292302 6292342 41 TGGCTGCTACGTGCAACTTCCACGTTCCCGGCCTGCCCTGG TGGCTGCTACGTGCAACTTCCATGTTCCCGGCCTGCCCTGG < 41bp 0.736437630559099 0.483494294654497 0.5656138 0.29605228 prediction 0.472875261118198 Functional Loss - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6292322 chr11:6292324 nonsynonymous SNV 0.039 2 23 hm5C_associated_SNPs_71167 0 0 0 0 1 CCKBR chr11:6292241 3'AG 6292241 Downstream 84bp
chr8 11615876 11615876 1 + A C rs7830178 11615875 + 11615855 11615895 41 CTCGGCCCTGAAGCTCTCCCCACAAGGCTATGCGTCTCCCG CTCGGCCCTGAAGCTCTCCCCCCAAGGCTATGCGTCTCCCG < 41bp 0.736434695340422 0.478224100561161 0.09726861 0.044940412 prediction 0.472869390680844 Functional Loss - GATA4 ENSG00000136574 CDS Human protein_coding chr8:11615875 chr8:11615876 synonymous SNV . 0 22 hm5C_associated_SNPs_71169 1 0 1 0 1 GATA4 chr8:11615802 3'AG 11615802 Downstream 75bp
chr14 93275863 93275863 1 + C T UCEC 93275861 + 93275841 93275881 41 AGCCTTACAGAGTGAAAAATCACGGTAGGTGATTCTATGAA AGCCTTACAGAGTGAAAAATCATGGTAGGTGATTCTATGAA < 41bp 0.816677270480627 0.580245263182251 0.63094115 0.56855905 prediction 0.472864014596752 Functional Loss - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93275861 chr14:93275863 stopgain 0.926 0 23 hm5C_associated_SNPs_71171 0 0 1 0 1 GOLGA5 chr14:93275864 5'GT 93275864 Upstream 2bp
chr19 10793909 10793909 1 + G C LUAD 10793905 + 10793885 10793925 41 TACGAGCTCATCTCCGAGACCGGGGGCAGCCACGACAAGCG TACGAGCTCATCTCCGAGACCGGGCGCAGCCACGACAAGCG < 41bp 0.855131341853391 0.618703574446415 0.9125829 0.8465564 prediction 0.472855534813952 Functional Loss - ILF3 ENSG00000129351 CDS Human protein_coding chr19:10793905 chr19:10793909 nonsynonymous SNV 0.804 3 25 hm5C_associated_SNPs_71173 0 0 1 0 2 ILF3 chr19:10793813 3'AG 10793813 Downstream 97bp
chr19 10793909 10793909 1 + G C LUAD 10793905 + 10793885 10793925 41 TACGAGCTCATCTCCGAGACCGGGGGCAGCCACGACAAGCG TACGAGCTCATCTCCGAGACCGGGCGCAGCCACGACAAGCG < 41bp 0.855131341853391 0.618703574446415 0.9125829 0.8465564 prediction 0.472855534813952 Functional Loss - ILF3 ENSG00000129351 CDS Human protein_coding chr19:10793905 chr19:10793909 nonsynonymous SNV 0.804 3 25 hm5C_associated_SNPs_71173 0 0 1 0 2 ILF3 chr19:10793938 5'GT 10793938 Upstream 30bp
chr1 212788580 212788580 1 + G A UCEC 212788577 + 212788557 212788597 41 TCACTGTCAGCGACAGACCCCTCGGGGTGTCCATCACAAAA TCACTGTCAGCGACAGACCCCTCAGGGTGTCCATCACAAAA < 41bp 0.753023297663044 0.516600275421643 0.040590584 0.048279434 prediction 0.472846044482804 Functional Loss - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212788577 chr1:212788580 nonsynonymous SNV 0.166 0 24 hm5C_associated_SNPs_71175 0 0 1 0 2 ATF3 chr1:212788490 3'AG 212788490 Downstream 91bp
chr1 212788580 212788580 1 + G A UCEC 212788577 + 212788557 212788597 41 TCACTGTCAGCGACAGACCCCTCGGGGTGTCCATCACAAAA TCACTGTCAGCGACAGACCCCTCAGGGTGTCCATCACAAAA < 41bp 0.753023297663044 0.516600275421643 0.040590584 0.048279434 prediction 0.472846044482804 Functional Loss - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212788577 chr1:212788580 nonsynonymous SNV 0.166 0 24 hm5C_associated_SNPs_71175 0 0 1 0 2 ATF3 chr1:212788603 5'GT 212788603 Upstream 24bp
chr5 128957966 128957966 1 + A C HNSC 128957965 + 128957945 128957985 41 GATGGTTCCCTCCAAGCTGCCAGGGATGACATACACTGCTG GATGGTTCCCTCCAAGCTGCCCGGGATGACATACACTGCTG < 41bp 0.7985095357111 0.562088929367027 0.9292675 0.4647957 prediction 0.472841212688146 Functional Loss - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:128957965 chr5:128957966 synonymous SNV . 0 22 hm5C_associated_SNPs_71176 0 0 0 0 2 ADAMTS19 chr5:128957891 3'AG 128957891 Downstream 76bp
chr5 128957966 128957966 1 + A C HNSC 128957965 + 128957945 128957985 41 GATGGTTCCCTCCAAGCTGCCAGGGATGACATACACTGCTG GATGGTTCCCTCCAAGCTGCCCGGGATGACATACACTGCTG < 41bp 0.7985095357111 0.562088929367027 0.9292675 0.4647957 prediction 0.472841212688146 Functional Loss - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:128957965 chr5:128957966 synonymous SNV . 0 22 hm5C_associated_SNPs_71176 0 0 0 0 2 ADAMTS19 chr5:128958041 5'GT 128958041 Upstream 76bp
chr15 41549162 41549162 1 + G T BLCA 41549159 + 41549139 41549179 41 GCCATCAACCCACTGGGGGACCGGATCATCAATGCCTTCTT GCCATCAACCCACTGGGGGACCGTATCATCAATGCCTTCTT < 41bp 0.736416995935411 0.341123801061619 0.20587984 0.022301793 prediction 0.472833991870822 Functional Loss - CHP1 ENSG00000187446 CDS Human protein_coding chr15:41549159 chr15:41549162 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_71178 0 0 1 0 2 CHP1 chr15:41549108 3'AG 41549108 Downstream 55bp
chr15 41549162 41549162 1 + G T BLCA 41549159 + 41549139 41549179 41 GCCATCAACCCACTGGGGGACCGGATCATCAATGCCTTCTT GCCATCAACCCACTGGGGGACCGTATCATCAATGCCTTCTT < 41bp 0.736416995935411 0.341123801061619 0.20587984 0.022301793 prediction 0.472833991870822 Functional Loss - CHP1 ENSG00000187446 CDS Human protein_coding chr15:41549159 chr15:41549162 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_71178 0 0 1 0 2 CHP1 chr15:41549188 5'GT 41549188 Upstream 27bp
chr1 226252079 226252079 1 + C T ESCA 226252077 + 226252057 226252097 41 CTCGTACAAAGCAGACTGCCCGCAAATCGACCGGTGGTAAA CTCGTACAAAGCAGACTGCCCGTAAATCGACCGGTGGTAAA < 41bp 0.822418666952251 0.586008271542219 0.09249392 0.08937523 prediction 0.472820790820064 Functional Loss - H3F3A ENSG00000163041 CDS Human protein_coding chr1:226252077 chr1:226252079 synonymous SNV . 0 23 hm5C_associated_SNPs_71179 0 0 0 0 1 H3F3AP4 chr1:226252030 3'AG 226252030 Downstream 50bp
chr19 1440105 1440105 1 + C T UCEC 1440103 + 1440083 1440123 41 AGCAGCACTCCCTGCTGAAGCGCCTGCGCAAGGCCAAGAAG AGCAGCACTCCCTGCTGAAGCGTCTGCGCAAGGCCAAGAAG < 41bp 0.736409654293429 0.488064975906523 0.43236774 0.44532797 prediction 0.472819308586858 Functional Loss - RPS15 ENSG00000115268 CDS Human protein_coding chr19:1440103 chr19:1440105 synonymous SNV . 0 23 hm5C_associated_SNPs_71180 0 0 1 0 1 RPS15 chr19:1440018 3'AG 1440018 Downstream 88bp
chr1 230930952 230930952 1 + G A UCEC 230930949 + 230930929 230930969 41 CTCCTGCAGCTGATTGTGCTCAGGTATGCGGATGAGGAGCT CTCCTGCAGCTGATTGTGCTCAGATATGCGGATGAGGAGCT < 41bp 0.741530958839322 0.505127135879677 0.8987273 0.8885627 prediction 0.472807645919289 Functional Loss - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230930949 chr1:230930952 synonymous SNV . 0 24 hm5C_associated_SNPs_71183 0 0 0 0 2 CAPN9 chr1:230930909 3'AG 230930909 Downstream 44bp
chr1 230930952 230930952 1 + G A UCEC 230930949 + 230930929 230930969 41 CTCCTGCAGCTGATTGTGCTCAGGTATGCGGATGAGGAGCT CTCCTGCAGCTGATTGTGCTCAGATATGCGGATGAGGAGCT < 41bp 0.741530958839322 0.505127135879677 0.8987273 0.8885627 prediction 0.472807645919289 Functional Loss - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230930949 chr1:230930952 synonymous SNV . 0 24 hm5C_associated_SNPs_71183 0 0 0 0 2 CAPN9 chr1:230931025 5'GT 230931025 Upstream 74bp
chr1 159803053 159803053 1 + A C LUAD 159803052 + 159803032 159803072 41 CCCCACCCCTCCATGTTCAGCACCAGGGAAGGCCTCCTACA CCCCACCCCTCCATGTTCAGCCCCAGGGAAGGCCTCCTACA < 41bp 0.736401531167032 0.481430113553259 0.13716093 0.091471344 prediction 0.472803062334064 Functional Loss - SLAMF8 ENSG00000158714 CDS Human protein_coding chr1:159803052 chr1:159803053 synonymous SNV . 0 22 hm5C_associated_SNPs_71184 0 0 0 0 1 SLAMF8 chr1:159803052 3'AG 159803052 Downstream 2bp
chr1 159803056 159803056 1 + A C UCEC 159803052 + 159803032 159803072 41 CCCCACCCCTCCATGTTCAGCACCAGGGAAGGCCTCCTACA CCCCACCCCTCCATGTTCAGCACCCGGGAAGGCCTCCTACA < 41bp 0.736401531167032 0.320629644493888 0.13716093 0.09865445 prediction 0.472803062334064 Functional Loss - SLAMF8 ENSG00000158714 CDS Human protein_coding chr1:159803052 chr1:159803056 synonymous SNV . 0 25 hm5C_associated_SNPs_71185 0 0 0 0 1 SLAMF8 chr1:159803052 3'AG 159803052 Downstream 5bp
chr22 50649116 50649116 1 + G T LGG 50649114 + 50649094 50649134 41 AACACCGGCCGCTACGCGTACAGCAAGCAGCCCGAGGTGTG AACACCGGCCGCTACGCGTACATCAAGCAGCCCGAGGTGTG < 41bp 0.736395776625415 0.384493798841414 0.15989584 0.04612145 prediction 0.472791553250831 Functional Loss - SELENOO ENSG00000073169 CDS Human protein_coding chr22:50649114 chr22:50649116 unknown 0.920 1 23 hm5C_associated_SNPs_71186 0 0 1 0 1 SELENOO chr22:50649060 3'AG 50649060 Downstream 57bp
chr12 7037504 7037504 1 + G A rs193192226 7037501 + 7037481 7037521 41 GCCCCCCAGAGGCGCCGGAGCCCGGAATCCCGCTCGGAGCC GCCCCCCAGAGGCGCCGGAGCCCAGAATCCCGCTCGGAGCC < 41bp 0.755180346482991 0.518788267978619 0.835456 0.5426271 prediction 0.472784157008745 Functional Loss - ATN1 ENSG00000111676 UTR5 Human protein_coding chr12:7037501 chr12:7037504 . . 0 24 hm5C_associated_SNPs_71187 0 0 1 0 1 ATN1 chr12:7037547 5'GT 7037547 Upstream 44bp
chr19 35832309 35832309 1 + C T SKCM 35832307 + 35832287 35832327 41 TCCGAGATTCACTCTGGAAACTCGGTCAGCCTCCAATGTGA TCCGAGATTCACTCTGGAAACTTGGTCAGCCTCCAATGTGA < 41bp 0.818795641088896 0.58241482397732 0.03094238 0.014381349 prediction 0.472761634223153 Functional Loss - CD22 ENSG00000012124 CDS Human protein_coding chr19:35832307 chr19:35832309 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_71189 0 0 0 0 1 CD22 chr19:35832246 3'AG 35832246 Downstream 64bp
chr22 31011416 31011416 1 + G A CESC 31011413 + 31011393 31011433 41 AGATCTTGAAGGCCCAGACCCCCGAGGGCCACTTTGGGAAT AGATCTTGAAGGCCCAGACCCCCAAGGGCCACTTTGGGAAT < 41bp 0.77705437067423 0.540677952099104 0.086897194 0.108632535 prediction 0.472752837150252 Functional Loss - TCN2 ENSG00000185339 CDS Human protein_coding chr22:31011413 chr22:31011416 nonsynonymous SNV 0.125 0 24 hm5C_associated_SNPs_71190 0 0 0 0 1 TCN2 chr22:31011460 5'GT 31011460 Upstream 45bp
chr5 235284 235284 1 + G A PAAD 235281 + 235261 235301 41 GCTGTGGCCCTGAGAAAGATCACGTCTACCTGCAGCTGCAC GCTGTGGCCCTGAGAAAGATCACATCTACCTGCAGCTGCAC < 41bp 0.766474605084815 0.530104754725066 0.32456976 0.15371013 prediction 0.472739700719497 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:235281 chr5:235284 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_71193 2 0 1 0 1 SDHA chr5:235259 3'AG 235259 Downstream 26bp
chr19 8316045 8316045 1 + G T ESCA 8316042 + 8316022 8316062 41 CGTGGACAGAGCTAGAAGACCGGGATGGCCGTGTCTACCCC CGTGGACAGAGCTAGAAGACCGGTATGGCCGTGTCTACCCC < 41bp 0.922603572570456 0.686235813072405 0.7790802 0.12822676 prediction 0.472735518996101 Functional Loss - CERS4 ENSG00000090661 CDS Human protein_coding chr19:8316042 chr19:8316045 nonsynonymous SNV 0.230 2 24 hm5C_associated_SNPs_71194 0 0 1 0 2 CERS4 chr19:8315960 3'AG 8315960 Downstream 86bp
chr19 8316045 8316045 1 + G T ESCA 8316042 + 8316022 8316062 41 CGTGGACAGAGCTAGAAGACCGGGATGGCCGTGTCTACCCC CGTGGACAGAGCTAGAAGACCGGTATGGCCGTGTCTACCCC < 41bp 0.922603572570456 0.686235813072405 0.7790802 0.12822676 prediction 0.472735518996101 Functional Loss - CERS4 ENSG00000090661 CDS Human protein_coding chr19:8316042 chr19:8316045 nonsynonymous SNV 0.230 2 24 hm5C_associated_SNPs_71194 0 0 1 0 2 CERS4 chr19:8316133 5'GT 8316133 Upstream 89bp
chr5 150632828 150632828 1 + C T CESC 150632826 + 150632806 150632846 41 TGATCGCCCTGGGCTTGCTTCTCGCGGCCCCTGCGCAAGCC TGATCGCCCTGGGCTTGCTTCTTGCGGCCCCTGCGCAAGCC < 41bp 0.775764392518704 0.539399184971575 0.30694222 0.09414777 prediction 0.472730415094259 Functional Loss - GM2A ENSG00000196743 CDS Human protein_coding chr5:150632826 chr5:150632828 synonymous SNV . 0 23 hm5C_associated_SNPs_71196 0 0 1 0 1 GM2A chr5:150632858 5'GT 150632858 Upstream 31bp
chr17 7577581 7577581 1 - A G COAD 7577582 - 7577562 7577602 41 TCTGACTGTACCACCATCCACTACAACTACATGTGTAACAG TCTGACTGTACCACCATCCACCACAACTACATGTGTAACAG < 41bp 0.776477065576714 0.540113740581153 0.6024087 0.015852273 prediction 0.472726649991122 Functional Loss - TP53 ENSG00000141510 CDS Human protein_coding chr17:7577582 chr17:7577581 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_71197 15 0 1 0 1 TP53 chr17:7577608 3'AG 7577608 Downstream 28bp
chr8 1496876 1496876 1 + G A SKCM 1496873 + 1496853 1496893 41 CAGGAGCATGAAGGGCCTTTCCGGAAGTCGGACCCAGCCGC CAGGAGCATGAAGGGCCTTTCCGAAAGTCGGACCCAGCCGC < 41bp 0.759312430699091 0.522951768842473 0.9395428 0.91508067 prediction 0.472721323713237 Functional Loss - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1496873 chr8:1496876 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_71199 0 0 0 0 1 DLGAP2 chr8:1496792 3'AG 1496792 Downstream 85bp
chr18 61562617 61562617 1 + G T COAD 61562615 + 61562595 61562635 41 GTTATCCTGATGCGATTTTGCAGGTATCTGACTTACTGGTC GTTATCCTGATGCGATTTTGCATGTATCTGACTTACTGGTC < 41bp 0.736357462507489 0.397588481358871 0.864154 0.3335722 prediction 0.472714925014979 Functional Loss - SERPINB2 ENSG00000197632 CDS Human protein_coding chr18:61562615 chr18:61562617 nonsynonymous SNV 0.927 0 23 hm5C_associated_SNPs_71201 0 0 0 0 1 SERPINB2 chr18:61562617 5'GT 61562617 Upstream 1bp
chr20 5987125 5987125 1 + G C rs568654866 5987121 + 5987101 5987141 41 CGGGCGCGGGGAAGGCGGCTCCCAGGCCAGCGGCCGGAGCG CGGGCGCGGGGAAGGCGGCTCCCACGCCAGCGGCCGGAGCG < 41bp 0.82417137716781 0.587822844383568 0.5746095 0.27844527 prediction 0.472697065568484 Functional Loss - CRLS1 ENSG00000088766 CDS Human protein_coding chr20:5987121 chr20:5987125 nonsynonymous SNV 0.025 0 25 hm5C_associated_SNPs_71202 0 0 1 0 1 CRLS1 chr20:5987198 5'GT 5987198 Upstream 74bp
chr13 37580266 37580266 1 + A C GBM 37580265 + 37580245 37580285 41 AATCAAGTTCACAGATAATTCAGAAAGAGGACTTATGCATT AATCAAGTTCACAGATAATTCCGAAAGAGGACTTATGCATT < 41bp 0.782380446055548 0.546035335512714 0.15535206 0.1112465 prediction 0.47269022108567 Functional Loss - EXOSC8 ENSG00000120699 CDS Human protein_coding chr13:37580265 chr13:37580266 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_71203 0 0 1 0 2 EXOSC8 chr13:37580252 3'AG 37580252 Downstream 15bp
chr13 37580266 37580266 1 + A C GBM 37580265 + 37580245 37580285 41 AATCAAGTTCACAGATAATTCAGAAAGAGGACTTATGCATT AATCAAGTTCACAGATAATTCCGAAAGAGGACTTATGCATT < 41bp 0.782380446055548 0.546035335512714 0.15535206 0.1112465 prediction 0.47269022108567 Functional Loss - EXOSC8 ENSG00000120699 CDS Human protein_coding chr13:37580265 chr13:37580266 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_71203 0 0 1 0 2 EXOSC8 chr13:37580297 5'GT 37580297 Upstream 32bp
chr7 100187922 100187922 1 - G A LGG 100187924 - 100187904 100187944 41 CAGAACCCTGATCTTGGAGGCGCGGACTGAGTCTGCGACAG CAGAACCCTGATCTTGGAGGCGTGGACTGAGTCTGCGACAG < 41bp 0.736344611486135 0.480348380310557 0.715098 0.8284874 prediction 0.47268922297227 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100187924 chr7:100187922 synonymous SNV . 0 23 hm5C_associated_SNPs_71204 0 0 0 0 2 FBXO24 chr7:100187853 5'GT 100187853 Upstream 70bp
chr7 100187922 100187922 1 - G A LGG 100187924 - 100187904 100187944 41 CAGAACCCTGATCTTGGAGGCGCGGACTGAGTCTGCGACAG CAGAACCCTGATCTTGGAGGCGTGGACTGAGTCTGCGACAG < 41bp 0.736344611486135 0.480348380310557 0.715098 0.8284874 prediction 0.47268922297227 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100187924 chr7:100187922 synonymous SNV . 0 23 hm5C_associated_SNPs_71204 0 0 0 0 2 FBXO24 chr7:100187954 3'AG 100187954 Downstream 33bp
chr16 68390655 68390655 1 + G A UCEC 68390652 + 68390632 68390672 41 TGGATGGAGTACCACCTGACCCCGGAGTGCACGCTCAGCAC TGGATGGAGTACCACCTGACCCCAGAGTGCACGCTCAGCAC < 41bp 0.763364773463571 0.527022712156728 0.13538912 0.19677898 prediction 0.472684122613686 Functional Loss - PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68390652 chr16:68390655 synonymous SNV . 0 24 hm5C_associated_SNPs_71205 0 0 1 0 1 PRMT7 chr16:68390604 3'AG 68390604 Downstream 52bp
chr17 56343551 56343551 1 + G A SARC 56343548 + 56343528 56343568 41 CTGGTGCGGGGCCTGCTGGCCAAGAAATCCAAGCTGATGAA CTGGTGCGGGGCCTGCTGGCCAAAAAATCCAAGCTGATGAA < 41bp 0.757088015003092 0.520747192722021 0.73620915 0.29001328 prediction 0.472681644562143 Functional Loss - LPO ENSG00000167419 CDS Human protein_coding chr17:56343548 chr17:56343551 synonymous SNV . 0 24 hm5C_associated_SNPs_71208 0 0 0 0 1 LPO chr17:56343514 3'AG 56343514 Downstream 38bp
chr15 22933766 22933766 1 + G A COAD 22933763 + 22933743 22933783 41 TTCAGTCTCTGCAGCAGCAGCTCGAAGTGATTTCTGGCTAC TTCAGTCTCTGCAGCAGCAGCTCAAAGTGATTTCTGGCTAC < 41bp 0.762669229805171 0.526335094100729 0.5688276 0.7462827 prediction 0.472668271408883 Functional Loss - CYFIP1 ENSG00000068793 CDS Human other chr15:22933763 chr15:22933766 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_71209 0 0 1 0 1 CYFIP1 chr15:22933748 3'AG 22933748 Downstream 19bp
chr1 229438646 229438646 1 + G T LUAD 229438644 + 229438624 229438664 41 AAAGAATGGGCTCAGGTATTCAGTACGGAGATGCTGCCTTG AAAGAATGGGCTCAGGTATTCATTACGGAGATGCTGCCTTG < 41bp 0.892527186550938 0.6561958157151 0.23311603 0.13316488 prediction 0.472662741671677 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229438644 chr1:229438646 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_71211 0 0 1 2 2 RAB4A chr1:229438609 3'AG 229438609 Downstream 38bp
chr1 229438646 229438646 1 + G T LUAD 229438644 + 229438624 229438664 41 AAAGAATGGGCTCAGGTATTCAGTACGGAGATGCTGCCTTG AAAGAATGGGCTCAGGTATTCATTACGGAGATGCTGCCTTG < 41bp 0.892527186550938 0.6561958157151 0.23311603 0.13316488 prediction 0.472662741671677 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229438644 chr1:229438646 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_71211 0 0 1 2 2 RAB4A chr1:229438736 5'GT 229438736 Upstream 91bp
chr1 201282382 201282382 1 + G T LUSC 201282379 + 201282359 201282399 41 GAACTGGAGCCGGCACTACCCCCGGGGCAGCTGTAACACCA GAACTGGAGCCGGCACTACCCCCTGGGCAGCTGTAACACCA < 41bp 0.73632768356244 0.339638069938348 0.8329575 0.24960372 prediction 0.472655367124881 Functional Loss - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201282379 chr1:201282382 nonsynonymous SNV 0.815 1 24 hm5C_associated_SNPs_71215 0 0 0 0 2 PKP1 chr1:201282294 3'AG 201282294 Downstream 89bp
chr1 201282382 201282382 1 + G T LUSC 201282379 + 201282359 201282399 41 GAACTGGAGCCGGCACTACCCCCGGGGCAGCTGTAACACCA GAACTGGAGCCGGCACTACCCCCTGGGCAGCTGTAACACCA < 41bp 0.73632768356244 0.339638069938348 0.8329575 0.24960372 prediction 0.472655367124881 Functional Loss - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201282379 chr1:201282382 nonsynonymous SNV 0.815 1 24 hm5C_associated_SNPs_71215 0 0 0 0 2 PKP1 chr1:201282450 5'GT 201282450 Upstream 69bp
chr12 81627233 81627233 1 + G T BRCA 81627231 + 81627211 81627251 41 TGTTGCAGGTCACAGAATTTCTGCAGGCGCCATTGAAGAGG TGTTGCAGGTCACAGAATTTCTTCAGGCGCCATTGAAGAGG < 41bp 0.877466331471245 0.641143369020068 0.124914646 0.12407291 prediction 0.472645924902354 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81627231 chr12:81627233 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_71216 0 0 1 0 1 ACSS3 chr12:81627250 5'GT 81627250 Upstream 18bp
chr10 17750824 17750824 1 + C T KIRC 17750822 + 17750802 17750842 41 GCCTACCTGGTTGCAGGGAACGCGCAGATGAGCCACCTCCA GCCTACCTGGTTGCAGGGAACGTGCAGATGAGCCACCTCCA < 41bp 0.820282595191193 0.583960963881083 0.7363924 0.53768384 prediction 0.47264326262022 Functional Loss - STAM ENSG00000136738 CDS Human protein_coding chr10:17750822 chr10:17750824 nonsynonymous SNV 0.827 0 23 hm5C_associated_SNPs_71217 0 0 1 0 1 STAM chr10:17750775 3'AG 17750775 Downstream 50bp
chr12 1741900 1741900 1 + G A CESC 1741897 + 1741877 1741917 41 AGCCCGTGTGCAGTCAGCTTCCCGGGCTCTCCCCTGGCCAG AGCCCGTGTGCAGTCAGCTTCCCAGGCTCTCCCCTGGCCAG < 41bp 0.786383328207076 0.550064175498525 0.8836638 0.6262381 prediction 0.472638305417101 Functional Loss - WNT5B ENSG00000111186 CDS Human protein_coding chr12:1741897 chr12:1741900 nonsynonymous SNV 0.987 4 24 hm5C_associated_SNPs_71218 0 0 0 0 1 WNT5B chr12:1741824 3'AG 1741824 Downstream 77bp
chr20 43052891 43052891 1 + G A SKCM 43052888 + 43052868 43052908 41 ACCTGTTGCAGGAGATGCTGCTGGGAGGTCCGTGCCAAGCC ACCTGTTGCAGGAGATGCTGCTGAGAGGTCCGTGCCAAGCC < 41bp 0.769621233027699 0.533302506967107 0.4051561 0.16582164 prediction 0.472637452121184 Functional Loss - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43052888 chr20:43052891 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_71219 0 0 1 0 1 HNF4A chr20:43052894 5'GT 43052894 Upstream 4bp
chrX 52844164 52844164 1 + G T UCEC 52844161 + 52844141 52844181 41 GGAGCTGTCTCAGTCAAAGACTGGGGATGAATGCGGAGATA GGAGCTGTCTCAGTCAAAGACTGTGGATGAATGCGGAGATA < 41bp 0.925909061879257 0.689592144669895 0.5223948 0.1556322 prediction 0.472633834418724 Functional Loss - XAGE5 ENSG00000171405 CDS Human protein_coding chrX:52844161 chrX:52844164 nonsynonymous SNV 0.024 3 24 hm5C_associated_SNPs_71220 0 0 0 0 2 XAGE5 chrX:52844116 3'AG 52844116 Downstream 49bp
chrX 52844164 52844164 1 + G T UCEC 52844161 + 52844141 52844181 41 GGAGCTGTCTCAGTCAAAGACTGGGGATGAATGCGGAGATA GGAGCTGTCTCAGTCAAAGACTGTGGATGAATGCGGAGATA < 41bp 0.925909061879257 0.689592144669895 0.5223948 0.1556322 prediction 0.472633834418724 Functional Loss - XAGE5 ENSG00000171405 CDS Human protein_coding chrX:52844161 chrX:52844164 nonsynonymous SNV 0.024 3 24 hm5C_associated_SNPs_71220 0 0 0 0 2 XAGE5 chrX:52844241 5'GT 52844241 Upstream 78bp
chr10 99343381 99343381 1 + C T UCEC 99343379 + 99343359 99343399 41 GCAGCTCTGGCAGGCTGATACCCGGCACGCCCTGGAGCATC GCAGCTCTGGCAGGCTGATACCTGGCACGCCCTGGAGCATC < 41bp 0.793113735157411 0.556803042181249 0.13126558 0.05703315 prediction 0.472621385952324 Functional Loss - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99343379 chr10:99343381 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_71221 0 0 0 0 1 ANKRD2 chr10:99343333 3'AG 99343333 Downstream 49bp
chr11 114315275 114315275 1 + A C BLCA 114315274 + 114315254 114315294 41 CTCTTGCAGTCTGGCCTTACCAAGGCAGTGAAGGAGAGTAC CTCTTGCAGTCTGGCCTTACCCAGGCAGTGAAGGAGAGTAC < 41bp 0.783478800176889 0.547171585270689 0.8813361 0.39335775 prediction 0.4726144298124 Functional Loss - REXO2 ENSG00000076043 CDS Human protein_coding chr11:114315274 chr11:114315275 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_71224 0 0 1 0 2 REXO2 chr11:114315263 3'AG 114315263 Downstream 13bp
chr11 114315275 114315275 1 + A C BLCA 114315274 + 114315254 114315294 41 CTCTTGCAGTCTGGCCTTACCAAGGCAGTGAAGGAGAGTAC CTCTTGCAGTCTGGCCTTACCCAGGCAGTGAAGGAGAGTAC < 41bp 0.783478800176889 0.547171585270689 0.8813361 0.39335775 prediction 0.4726144298124 Functional Loss - REXO2 ENSG00000076043 CDS Human protein_coding chr11:114315274 chr11:114315275 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_71224 0 0 1 0 2 REXO2 chr11:114315374 5'GT 114315374 Upstream 100bp
chr11 19186653 19186653 1 + C T READ 19186651 + 19186631 19186671 41 TGTATGCAACTGCTGTGTGGCTCGATATGATCAACACTGCC TGTATGCAACTGCTGTGTGGCTTGATATGATCAACACTGCC < 41bp 0.851435712573991 0.615138785579918 0.078029424 0.026432782 prediction 0.472593853988147 Functional Loss - ZDHHC13 ENSG00000177054 CDS Human protein_coding chr11:19186651 chr11:19186653 stopgain 0.997 1 23 hm5C_associated_SNPs_71228 0 0 0 0 2 ZDHHC13 chr11:19186599 3'AG 19186599 Downstream 55bp
chr11 19186653 19186653 1 + C T READ 19186651 + 19186631 19186671 41 TGTATGCAACTGCTGTGTGGCTCGATATGATCAACACTGCC TGTATGCAACTGCTGTGTGGCTTGATATGATCAACACTGCC < 41bp 0.851435712573991 0.615138785579918 0.078029424 0.026432782 prediction 0.472593853988147 Functional Loss - ZDHHC13 ENSG00000177054 CDS Human protein_coding chr11:19186651 chr11:19186653 stopgain 0.997 1 23 hm5C_associated_SNPs_71228 0 0 0 0 2 ZDHHC13 chr11:19186692 5'GT 19186692 Upstream 40bp
chr11 61252193 61252193 1 + G A rs78002652 61252190 + 61252170 61252210 41 TCCATTTCGACACCCAGGAGCACGGGCCTCAGGCCATCACG TCCATTTCGACACCCAGGAGCACAGGCCTCAGGCCATCACG < 41bp 0.736296416063287 0.479020917869964 0.69591796 0.6036948 prediction 0.472592832126575 Functional Loss - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61252190 chr11:61252193 nonsynonymous SNV 0.556 1 24 hm5C_associated_SNPs_71229 0 0 0 0 2 PPP1R32 chr11:61252160 3'AG 61252160 Downstream 34bp
chr11 61252193 61252193 1 + G A rs78002652 61252190 + 61252170 61252210 41 TCCATTTCGACACCCAGGAGCACGGGCCTCAGGCCATCACG TCCATTTCGACACCCAGGAGCACAGGCCTCAGGCCATCACG < 41bp 0.736296416063287 0.479020917869964 0.69591796 0.6036948 prediction 0.472592832126575 Functional Loss - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61252190 chr11:61252193 nonsynonymous SNV 0.556 1 24 hm5C_associated_SNPs_71229 0 0 0 0 2 PPP1R32 chr11:61252288 5'GT 61252288 Upstream 96bp
chr4 1807877 1807877 1 + G A COAD 1807874 + 1807854 1807894 41 TGGCCCGGGACGTGCACAACCTCGACTACTACAAGAAGACG TGGCCCGGGACGTGCACAACCTCAACTACTACAAGAAGACG < 41bp 0.739646703704509 0.503352172825274 0.14585906 0.26830775 prediction 0.472589061758471 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1807874 chr4:1807877 nonsynonymous SNV 0.943 5 24 hm5C_associated_SNPs_71230 0 0 1 0 2 FGFR3 chr4:1807778 3'AG 1807778 Downstream 100bp
chr4 1807877 1807877 1 + G A COAD 1807874 + 1807854 1807894 41 TGGCCCGGGACGTGCACAACCTCGACTACTACAAGAAGACG TGGCCCGGGACGTGCACAACCTCAACTACTACAAGAAGACG < 41bp 0.739646703704509 0.503352172825274 0.14585906 0.26830775 prediction 0.472589061758471 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1807874 chr4:1807877 nonsynonymous SNV 0.943 5 24 hm5C_associated_SNPs_71230 0 0 1 0 2 FGFR3 chr4:1807900 5'GT 1807900 Upstream 24bp
chr2 46770907 46770907 1 + G C SKCM 46770903 + 46770883 46770923 41 GTCCTTGCAGTCAGCGTCACCGTGGGGGGCAAGCAGTACCT GTCCTTGCAGTCAGCGTCACCGTGCGGGGCAAGCAGTACCT < 41bp 0.840086977892287 0.603798632138047 0.8074907 0.14434364 prediction 0.472576691508481 Functional Loss - RHOQ ENSG00000119729 CDS Human protein_coding chr2:46770903 chr2:46770907 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_71232 0 0 0 0 2 RHOQ chr2:46770893 3'AG 46770893 Downstream 15bp
chr2 46770907 46770907 1 + G C SKCM 46770903 + 46770883 46770923 41 GTCCTTGCAGTCAGCGTCACCGTGGGGGGCAAGCAGTACCT GTCCTTGCAGTCAGCGTCACCGTGCGGGGCAAGCAGTACCT < 41bp 0.840086977892287 0.603798632138047 0.8074907 0.14434364 prediction 0.472576691508481 Functional Loss - RHOQ ENSG00000119729 CDS Human protein_coding chr2:46770903 chr2:46770907 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_71232 0 0 0 0 2 RHOQ chr2:46770951 5'GT 46770951 Upstream 45bp
chr4 190878609 190878609 1 + G C COAD 190878605 + 190878585 190878625 41 CTTTATTAGATGCAATGAAGCAGGGGACATAGAAGCAAAAA CTTTATTAGATGCAATGAAGCAGGCGACATAGAAGCAAAAA < 41bp 0.81375393160788 0.57746856963811 0.92015815 0.8621941 prediction 0.47257072393954 Functional Loss - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190878605 chr4:190878609 synonymous SNV . 0 25 hm5C_associated_SNPs_71233 0 0 0 0 2 FRG1 chr4:190878553 3'AG 190878553 Downstream 57bp
chr4 190878609 190878609 1 + G C COAD 190878605 + 190878585 190878625 41 CTTTATTAGATGCAATGAAGCAGGGGACATAGAAGCAAAAA CTTTATTAGATGCAATGAAGCAGGCGACATAGAAGCAAAAA < 41bp 0.81375393160788 0.57746856963811 0.92015815 0.8621941 prediction 0.47257072393954 Functional Loss - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190878605 chr4:190878609 synonymous SNV . 0 25 hm5C_associated_SNPs_71233 0 0 0 0 2 FRG1 chr4:190878657 5'GT 190878657 Upstream 49bp
chr16 89703731 89703731 1 + G A UCEC 89703728 + 89703708 89703748 41 CCGGTCATCTTCAGCCACTCCTCGGCCTACAGCGTGTGCGC CCGGTCATCTTCAGCCACTCCTCAGCCTACAGCGTGTGCGC < 41bp 0.783853532836732 0.547571038059134 0.37385952 0.2469571 prediction 0.472564989555196 Functional Loss - DPEP1 ENSG00000015413 CDS Human protein_coding chr16:89703728 chr16:89703731 synonymous SNV . 0 24 hm5C_associated_SNPs_71234 0 0 0 0 1 DPEP1 chr16:89703788 5'GT 89703788 Upstream 58bp
chr19 45448472 45448472 1 + G T UCEC 45448469 + 45448449 45448489 41 AGGGACCTGGGTCCGCTCACCAAGGCCTGGTTCCTCGAATC AGGGACCTGGGTCCGCTCACCAATGCCTGGTTCCTCGAATC < 41bp 0.736274230241821 0.327209455308951 0.88813984 0.16715181 prediction 0.472548460483642 Functional Loss - APOC4 ENSG00000224916;ENSG00000267467 CDS Human other chr19:45448469 chr19:45448472 nonsynonymous SNV 0.186 0 24 hm5C_associated_SNPs_71238 0 0 0 0 1 APOC4 chr19:45448397 3'AG 45448397 Downstream 76bp
chr19 6901910 6901910 1 + G A SKCM 6901907 + 6901887 6901927 41 CGTGGATGAATGTGCAGATCCAAGAGCTTGCCCAGAGCATG CGTGGATGAATGTGCAGATCCAAAAGCTTGCCCAGAGCATG < 41bp 0.736273892224026 0.493785340843407 0.28116453 0.15944445 prediction 0.472547784448051 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6901907 chr19:6901910 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_71239 0 0 0 0 1 ADGRE1 chr19:6901886 3'AG 6901886 Downstream 25bp
chr3 147130327 147130327 1 + G A UCEC 147130324 + 147130304 147130344 41 GGGGAGAAGCCCTTCAAGTGCGAGTTTGAGGGCTGTGACCG GGGGAGAAGCCCTTCAAGTGCGAATTTGAGGGCTGTGACCG < 41bp 0.76365117037524 0.527387369004397 0.26244253 0.18479174 prediction 0.472527602741686 Functional Loss - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147130324 chr3:147130327 synonymous SNV . 0 24 hm5C_associated_SNPs_71243 0 0 1 0 1 ZIC1 chr3:147130305 3'AG 147130305 Downstream 23bp
chr14 93264325 93264325 1 + C T STAD 93264323 + 93264303 93264343 41 ATTCTTTTGGGAGCCAAACCCACGGTAGTTAATCAGTCCTC ATTCTTTTGGGAGCCAAACCCATGGTAGTTAATCAGTCCTC < 41bp 0.803784190494206 0.567523024974636 0.8679538 0.7202114 prediction 0.47252233103914 Functional Loss - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93264323 chr14:93264325 synonymous SNV . 0 23 hm5C_associated_SNPs_71246 0 0 0 0 1 GOLGA5 chr14:93264326 5'GT 93264326 Upstream 2bp
chr9 124534959 124534959 1 + G T LUAD 124534957 + 124534937 124534977 41 GTTTTTTGTCACAAGGTCCTCCGGGGTCCAGCCCTCACCTG GTTTTTTGTCACAAGGTCCTCCTGGGTCCAGCCCTCACCTG < 41bp 0.736258714283164 0.380944955208776 0.94801617 0.36289895 prediction 0.472517428566328 Functional Loss - DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124534957 chr9:124534959 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_71247 0 0 1 0 2 DAB2IP chr9:124534886 3'AG 124534886 Downstream 74bp
chr9 124534959 124534959 1 + G T LUAD 124534957 + 124534937 124534977 41 GTTTTTTGTCACAAGGTCCTCCGGGGTCCAGCCCTCACCTG GTTTTTTGTCACAAGGTCCTCCTGGGTCCAGCCCTCACCTG < 41bp 0.736258714283164 0.380944955208776 0.94801617 0.36289895 prediction 0.472517428566328 Functional Loss - DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124534957 chr9:124534959 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_71247 0 0 1 0 2 DAB2IP chr9:124534952 3'AG 124534952 Downstream 8bp
chr3 112998239 112998239 1 + A T HNSC 112998235 + 112998215 112998255 41 AAGCTAAAGAAAGTGGGAGACTGGATTCTGGCCACCAGCGC AAGCTAAAGAAAGTGGGAGACTGGTTTCTGGCCACCAGCGC < 41bp 0.884326887909303 0.648069417809564 0.8644407 0.77427626 prediction 0.472514940199478 Functional Loss - BOC ENSG00000144857 CDS Human protein_coding chr3:112998235 chr3:112998239 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_71248 0 0 0 0 1 BOC chr3:112998302 5'GT 112998302 Upstream 64bp
chr6 46801241 46801241 1 + G A SKCM 46801238 + 46801218 46801258 41 CGGAACAGGATGTCCTCAAGCATGGTGTTCACTACCTCGAA CGGAACAGGATGTCCTCAAGCATAGTGTTCACTACCTCGAA < 41bp 0.75042504524903 0.514175959261337 0.6926241 0.34703264 prediction 0.472498171975387 Functional Loss - MEP1A ENSG00000112818 CDS Human protein_coding chr6:46801238 chr6:46801241 nonsynonymous SNV 0.103 1 24 hm5C_associated_SNPs_71251 0 0 0 0 1 MEP1A chr6:46801275 5'GT 46801275 Upstream 35bp
chrX 103411663 103411663 1 + G T UCEC 103411661 + 103411641 103411681 41 CTCCACCGCTTCCACACCAACAGGTACGAACTGCACCTGAG CTCCACCGCTTCCACACCAACATGTACGAACTGCACCTGAG < 41bp 0.736246890741984 0.379247444937434 0.91597974 0.45082211 prediction 0.472493781483969 Functional Loss - FAM199X ENSG00000123575 CDS Human protein_coding chrX:103411661 chrX:103411663 nonsynonymous SNV 0.989 2 23 hm5C_associated_SNPs_71253 0 0 0 0 1 FAM199X chrX:103411663 5'GT 103411663 Upstream 1bp
chr19 36349452 36349452 1 + C T rs199937874 36349450 + 36349430 36349470 41 GCTCCAGACCAGCCCAACTGCACGTGCTGGGTAAGGACCTC GCTCCAGACCAGCCCAACTGCATGTGCTGGGTAAGGACCTC < 41bp 0.736239001753929 0.474191866360088 0.5764978 0.3423879 prediction 0.472478003507858 Functional Loss - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36349450 chr19:36349452 synonymous SNV . 0 23 hm5C_associated_SNPs_71256 0 0 0 0 1 KIRREL2 chr19:36349459 5'GT 36349459 Upstream 8bp
chr19 36349453 36349453 1 + G A LAML 36349450 + 36349430 36349470 41 GCTCCAGACCAGCCCAACTGCACGTGCTGGGTAAGGACCTC GCTCCAGACCAGCCCAACTGCACATGCTGGGTAAGGACCTC < 41bp 0.736239001753929 0.498644622709384 0.5764978 0.49873462 prediction 0.472478003507858 Functional Loss - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36349450 chr19:36349453 nonsynonymous SNV 0.923 3 24 hm5C_associated_SNPs_71257 0 0 0 0 1 KIRREL2 chr19:36349459 5'GT 36349459 Upstream 7bp
chr16 23767474 23767474 1 + G T UCEC 23767471 + 23767451 23767491 41 GACACAGAAACCCAAGACCCCAAGAAACCTGAACCTCTCAA GACACAGAAACCCAAGACCCCAATAAACCTGAACCTCTCAA < 41bp 0.736236785295556 0.3555086412049 0.22522622 0.1102702 prediction 0.472473570591112 Functional Loss - CHP2 ENSG00000166869 CDS Human protein_coding chr16:23767471 chr16:23767474 nonsynonymous SNV 0.934 0 24 hm5C_associated_SNPs_71260 0 0 0 0 2 CHP2 chr16:23767384 3'AG 23767384 Downstream 91bp
chr16 23767474 23767474 1 + G T UCEC 23767471 + 23767451 23767491 41 GACACAGAAACCCAAGACCCCAAGAAACCTGAACCTCTCAA GACACAGAAACCCAAGACCCCAATAAACCTGAACCTCTCAA < 41bp 0.736236785295556 0.3555086412049 0.22522622 0.1102702 prediction 0.472473570591112 Functional Loss - CHP2 ENSG00000166869 CDS Human protein_coding chr16:23767471 chr16:23767474 nonsynonymous SNV 0.934 0 24 hm5C_associated_SNPs_71260 0 0 0 0 2 CHP2 chr16:23767514 5'GT 23767514 Upstream 41bp
chr17 33513399 33513399 1 + T C STAD 33513398 + 33513378 33513418 41 CACCGGGGCCTGGTCATTGCCTACAACCTACTGGCAGCCGA CACCGGGGCCTGGTCATTGCCCACAACCTACTGGCAGCCGA < 41bp 0.800230944821473 0.563996647893412 0.4984487 0.050494432 prediction 0.472468593856123 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33513398 chr17:33513399 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_71261 0 0 0 0 1 UNC45B chr17:33513318 3'AG 33513318 Downstream 82bp
chr17 4647529 4647529 1 + G A UCEC 4647526 + 4647506 4647546 41 ACAAACAGTCACTGAAGATCCACGTGGTGGAGGCCGGGAAG ACAAACAGTCACTGAAGATCCACATGGTGGAGGCCGGGAAG < 41bp 0.736233642448341 0.494644774076735 0.15172705 0.077854544 prediction 0.472467284896682 Functional Loss - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4647526 chr17:4647529 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_71262 0 0 0 0 2 ZMYND15 chr17:4647485 3'AG 4647485 Downstream 45bp
chr17 4647529 4647529 1 + G A UCEC 4647526 + 4647506 4647546 41 ACAAACAGTCACTGAAGATCCACGTGGTGGAGGCCGGGAAG ACAAACAGTCACTGAAGATCCACATGGTGGAGGCCGGGAAG < 41bp 0.736233642448341 0.494644774076735 0.15172705 0.077854544 prediction 0.472467284896682 Functional Loss - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4647526 chr17:4647529 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_71262 0 0 0 0 2 ZMYND15 chr17:4647573 5'GT 4647573 Upstream 45bp
chr9 37707446 37707446 1 + G A SKCM 37707443 + 37707423 37707463 41 GCTGCAGCTGATGGGCCCGCCAGGAACCCAACTCAGACCCT GCTGCAGCTGATGGGCCCGCCAGAAACCCAACTCAGACCCT < 41bp 0.736231365900212 0.499743065321239 0.71908015 0.416809 prediction 0.472462731800424 Functional Loss - FRMPD1 ENSG00000070601 CDS Human protein_coding chr9:37707443 chr9:37707446 synonymous SNV . 0 24 hm5C_associated_SNPs_71263 0 0 0 0 1 FRMPD1 chr9:37707413 3'AG 37707413 Downstream 34bp
chr9 37707445 37707445 1 + G T UCEC 37707443 + 37707423 37707463 41 GCTGCAGCTGATGGGCCCGCCAGGAACCCAACTCAGACCCT GCTGCAGCTGATGGGCCCGCCATGAACCCAACTCAGACCCT < 41bp 0.736231365900212 0.378714284277927 0.71908015 0.16362005 prediction 0.472462731800424 Functional Loss - FRMPD1 ENSG00000070601 CDS Human protein_coding chr9:37707443 chr9:37707445 nonsynonymous SNV 0.291 2 23 hm5C_associated_SNPs_71264 0 0 0 0 1 FRMPD1 chr9:37707413 3'AG 37707413 Downstream 33bp
chr16 2124276 2124276 1 + T C STAD 2124275 + 2124255 2124295 41 TGCGTCGTGGCCTTGTCCATCTGCAGCGTGGAGATGCCTGA TGCGTCGTGGCCTTGTCCATCCGCAGCGTGGAGATGCCTGA < 41bp 0.78418667743897 0.547957688701616 0.18167263 0.11575943 prediction 0.472457977474708 Functional Loss - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2124275 chr16:2124276 nonsynonymous SNV 0.977 5 22 hm5C_associated_SNPs_71266 0 0 1 0 1 TSC2 chr16:2124201 3'AG 2124201 Downstream 76bp
chr9 35800139 35800139 1 + G A LAML 35800136 + 35800116 35800156 41 TTCGAATTGTGGAAAAGATGCAGGGACGAAGATATCACGGT TTCGAATTGTGGAAAAGATGCAGAGACGAAGATATCACGGT < 41bp 0.760468502020939 0.524244243544855 0.7348061 0.28710282 prediction 0.472448516952167 Functional Loss - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35800136 chr9:35800139 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_71268 0 0 0 0 1 NPR2 chr9:35800154 5'GT 35800154 Upstream 16bp
chr2 172841176 172841176 1 + C T rs77061901 172841174 + 172841154 172841194 41 TCAAGATTTGCCCTGTTTTTCCCGGGAAAAATTAATGCAAG TCAAGATTTGCCCTGTTTTTCCTGGGAAAAATTAATGCAAG < 41bp 0.736222629759234 0.469175017674539 0.911006 0.8303546 prediction 0.472445259518467 Functional Loss - HAT1 ENSG00000128708 CDS Human protein_coding chr2:172841174 chr2:172841176 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_71269 0 0 1 0 2 HAT1 chr2:172841096 3'AG 172841096 Downstream 81bp
chr2 172841176 172841176 1 + C T rs77061901 172841174 + 172841154 172841194 41 TCAAGATTTGCCCTGTTTTTCCCGGGAAAAATTAATGCAAG TCAAGATTTGCCCTGTTTTTCCTGGGAAAAATTAATGCAAG < 41bp 0.736222629759234 0.469175017674539 0.911006 0.8303546 prediction 0.472445259518467 Functional Loss - HAT1 ENSG00000128708 CDS Human protein_coding chr2:172841174 chr2:172841176 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_71269 0 0 1 0 2 HAT1 chr2:172841247 5'GT 172841247 Upstream 72bp
chr16 67578271 67578271 1 + G A HNSC 67578268 + 67578248 67578288 41 CCCAGTGCCCGCCCCCTCAGCACGGGGTGTCCAGCTCTGGA CCCAGTGCCCGCCCCCTCAGCACAGGGTGTCCAGCTCTGGA < 41bp 0.736217901225489 0.490965321850105 0.42302746 0.18735647 prediction 0.472435802450978 Functional Loss - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578268 chr16:67578271 synonymous SNV . 0 24 hm5C_associated_SNPs_71272 0 0 1 0 2 RIPOR1 chr16:67578202 3'AG 67578202 Downstream 70bp
chr16 67578271 67578271 1 + G A HNSC 67578268 + 67578248 67578288 41 CCCAGTGCCCGCCCCCTCAGCACGGGGTGTCCAGCTCTGGA CCCAGTGCCCGCCCCCTCAGCACAGGGTGTCCAGCTCTGGA < 41bp 0.736217901225489 0.490965321850105 0.42302746 0.18735647 prediction 0.472435802450978 Functional Loss - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578268 chr16:67578271 synonymous SNV . 0 24 hm5C_associated_SNPs_71272 0 0 1 0 2 RIPOR1 chr16:67578334 5'GT 67578334 Upstream 64bp
chr16 67578270 67578270 1 + C T LGG 67578268 + 67578248 67578288 41 CCCAGTGCCCGCCCCCTCAGCACGGGGTGTCCAGCTCTGGA CCCAGTGCCCGCCCCCTCAGCATGGGGTGTCCAGCTCTGGA < 41bp 0.736217901225489 0.47800469695214 0.42302746 0.43234277 prediction 0.472435802450978 Functional Loss - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578268 chr16:67578270 nonsynonymous SNV 0.526 4 23 hm5C_associated_SNPs_71273 0 0 1 0 2 RIPOR1 chr16:67578202 3'AG 67578202 Downstream 69bp
chr16 67578270 67578270 1 + C T LGG 67578268 + 67578248 67578288 41 CCCAGTGCCCGCCCCCTCAGCACGGGGTGTCCAGCTCTGGA CCCAGTGCCCGCCCCCTCAGCATGGGGTGTCCAGCTCTGGA < 41bp 0.736217901225489 0.47800469695214 0.42302746 0.43234277 prediction 0.472435802450978 Functional Loss - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578268 chr16:67578270 nonsynonymous SNV 0.526 4 23 hm5C_associated_SNPs_71273 0 0 1 0 2 RIPOR1 chr16:67578334 5'GT 67578334 Upstream 65bp
chr19 15131402 15131402 1 + C T PAAD 15131400 + 15131380 15131420 41 CCACTCATGGGTGAACCTCTCCCGAGCCCCCACTCCACGCA CCACTCATGGGTGAACCTCTCCTGAGCCCCCACTCCACGCA < 41bp 0.811561907997342 0.575344366477834 0.8237909 0.5100637 prediction 0.472435083039015 Functional Loss - CCDC105 ENSG00000160994 CDS Human protein_coding chr19:15131400 chr19:15131402 stopgain 0.189 0 23 hm5C_associated_SNPs_71274 0 0 0 0 1 CCDC105 chr19:15131471 5'GT 15131471 Upstream 70bp
chr1 84945147 84945147 1 + G T SARC 84945145 + 84945125 84945165 41 TTTCGGAGATTAAAAACAAACAGCGGCGACACTTAATGTTC TTTCGGAGATTAAAAACAAACATCGGCGACACTTAATGTTC < 41bp 0.890602385254371 0.654407832452195 0.18700936 0.088871926 prediction 0.472389105604351 Functional Loss - RPF1 ENSG00000117133 CDS Human protein_coding chr1:84945145 chr1:84945147 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_71282 0 0 1 0 1 RPF1 chr1:84945192 5'GT 84945192 Upstream 46bp
chr12 7050100 7050100 1 + G A UCEC 7050097 + 7050077 7050117 41 GGCCTCAGGGTCTCACCTTACCCGGATCCCCTACCCAGCTG GGCCTCAGGGTCTCACCTTACCCAGATCCCCTACCCAGCTG < 41bp 0.752054000146057 0.515863240749821 0.31146654 0.082515776 prediction 0.472381518792471 Functional Loss - ATN1 ENSG00000111676 CDS Human protein_coding chr12:7050097 chr12:7050100 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_71285 0 0 1 0 2 ATN1 chr12:7050043 3'AG 7050043 Downstream 58bp
chr12 7050100 7050100 1 + G A UCEC 7050097 + 7050077 7050117 41 GGCCTCAGGGTCTCACCTTACCCGGATCCCCTACCCAGCTG GGCCTCAGGGTCTCACCTTACCCAGATCCCCTACCCAGCTG < 41bp 0.752054000146057 0.515863240749821 0.31146654 0.082515776 prediction 0.472381518792471 Functional Loss - ATN1 ENSG00000111676 CDS Human protein_coding chr12:7050097 chr12:7050100 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_71285 0 0 1 0 2 ATN1 chr12:7050186 5'GT 7050186 Upstream 87bp
chr11 3418384 3418384 1 + C T rs142844100 3418382 + 3418362 3418402 41 CCGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCA CCGGAGTGCAGTGGCGTGATCTTGGCTCGCTACAACCACCA < 41bp 0.757966783058717 0.52178547786315 0.2731411 0.13162279 prediction 0.472362610391135 Functional Loss - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3418382 chr11:3418384 . . 0 23 hm5C_associated_SNPs_71287 0 0 0 0 1 TSSC2 chr11:3418347 3'AG 3418347 Downstream 38bp
chr21 40762703 40762703 1 + C T COAD 40762701 + 40762681 40762721 41 CAGGACATGAAGCAGGAGCTCTCCACAGTCAACATGATGGA CAGGACATGAAGCAGGAGCTCTTCACAGTCAACATGATGGA < 41bp 0.84568102602131 0.609500945448289 0.9259857 0.16287267 prediction 0.472360161146041 Functional Loss - WRB;WRB-SH3BGR ENSG00000182093 CDS Human protein_coding chr21:40762701 chr21:40762703 nonsynonymous SNV 0.547 4 23 hm5C_associated_SNPs_71288 0 0 1 0 2 WRB;WRB-SH3BGR chr21:40762624 3'AG 40762624 Downstream 80bp
chr21 40762703 40762703 1 + C T COAD 40762701 + 40762681 40762721 41 CAGGACATGAAGCAGGAGCTCTCCACAGTCAACATGATGGA CAGGACATGAAGCAGGAGCTCTTCACAGTCAACATGATGGA < 41bp 0.84568102602131 0.609500945448289 0.9259857 0.16287267 prediction 0.472360161146041 Functional Loss - WRB;WRB-SH3BGR ENSG00000182093 CDS Human protein_coding chr21:40762701 chr21:40762703 nonsynonymous SNV 0.547 4 23 hm5C_associated_SNPs_71288 0 0 1 0 2 WRB;WRB-SH3BGR chr21:40762789 5'GT 40762789 Upstream 87bp
chrX 30738807 30738807 1 + A C UCEC 30738806 + 30738786 30738826 41 CAGGTAGATGGAGGAATGACCAGCAACAAAATTCTTATGCA CAGGTAGATGGAGGAATGACCCGCAACAAAATTCTTATGCA < 41bp 0.769976545323769 0.533797702971901 0.40520972 0.16685179 prediction 0.472357684703736 Functional Loss - GK ENSG00000198814 CDS Human protein_coding chrX:30738806 chrX:30738807 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_71289 0 0 0 0 2 GK chrX:30738738 3'AG 30738738 Downstream 70bp
chrX 30738807 30738807 1 + A C UCEC 30738806 + 30738786 30738826 41 CAGGTAGATGGAGGAATGACCAGCAACAAAATTCTTATGCA CAGGTAGATGGAGGAATGACCCGCAACAAAATTCTTATGCA < 41bp 0.769976545323769 0.533797702971901 0.40520972 0.16685179 prediction 0.472357684703736 Functional Loss - GK ENSG00000198814 CDS Human protein_coding chrX:30738806 chrX:30738807 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_71289 0 0 0 0 2 GK chrX:30738858 5'GT 30738858 Upstream 52bp
chr16 84695244 84695244 1 + C T HNSC 84695242 + 84695222 84695262 41 TCGTGTACATCTCGGGGGGCCACGACTACCAAATTGGCCCC TCGTGTACATCTCGGGGGGCCATGACTACCAAATTGGCCCC < 41bp 0.811808647023732 0.575640416380375 0.28009707 0.24680468 prediction 0.472336461286714 Functional Loss - KLHL36 ENSG00000135686 CDS Human protein_coding chr16:84695242 chr16:84695244 synonymous SNV . 0 23 hm5C_associated_SNPs_71293 0 0 1 0 1 KLHL36 chr16:84695184 3'AG 84695184 Downstream 61bp
chr10 134219725 134219725 1 + C T ACC 134219723 + 134219703 134219743 41 ATAACCGAGGCTGCAAATGCCGCAAGACACGTGGCCCCGGA ATAACCGAGGCTGCAAATGCCGTAAGACACGTGGCCCCGGA < 41bp 0.787127333684161 0.550962452368921 0.66230094 0.5568083 prediction 0.47232976263048 Functional Loss - PWWP2B ENSG00000171813 CDS Human protein_coding chr10:134219723 chr10:134219725 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_71294 0 0 1 0 1 PWWP2B chr10:134219793 5'GT 134219793 Upstream 69bp
chr3 49212502 49212502 1 + G A CESC 49212499 + 49212479 49212519 41 CTCCCCTCTCCTGCAGGGTCCTGGACCAAATTGCCCCGCAG CTCCCCTCTCCTGCAGGGTCCTGAACCAAATTGCCCCGCAG < 41bp 0.747898191630433 0.511736206425458 0.8800224 0.3494156 prediction 0.47232397040995 Functional Loss - KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212499 chr3:49212502 stopgain 0.999 1 24 hm5C_associated_SNPs_71295 0 0 1 2 2 KLHDC8B chr3:49212495 3'AG 49212495 Downstream 8bp
chr3 49212502 49212502 1 + G A CESC 49212499 + 49212479 49212519 41 CTCCCCTCTCCTGCAGGGTCCTGGACCAAATTGCCCCGCAG CTCCCCTCTCCTGCAGGGTCCTGAACCAAATTGCCCCGCAG < 41bp 0.747898191630433 0.511736206425458 0.8800224 0.3494156 prediction 0.47232397040995 Functional Loss - KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212499 chr3:49212502 stopgain 0.999 1 24 hm5C_associated_SNPs_71295 0 0 1 2 2 KLHDC8B chr3:49212596 5'GT 49212596 Upstream 95bp
chr12 49298806 49298806 1 + G T LIHC 49298804 + 49298784 49298824 41 CACAGTGGAGAACTGTCCTTCGGGAAGTCAAGACCAGAGAA CACAGTGGAGAACTGTCCTTCGTGAAGTCAAGACCAGAGAA < 41bp 0.869026073469967 0.632879275644345 0.9224593 0.42881364 prediction 0.472293595651246 Functional Loss - CCDC65 ENSG00000139537 CDS Human protein_coding chr12:49298804 chr12:49298806 synonymous SNV . 0 23 hm5C_associated_SNPs_71302 0 0 0 0 2 CCDC65 chr12:49298729 3'AG 49298729 Downstream 78bp
chr12 49298806 49298806 1 + G T LIHC 49298804 + 49298784 49298824 41 CACAGTGGAGAACTGTCCTTCGGGAAGTCAAGACCAGAGAA CACAGTGGAGAACTGTCCTTCGTGAAGTCAAGACCAGAGAA < 41bp 0.869026073469967 0.632879275644345 0.9224593 0.42881364 prediction 0.472293595651246 Functional Loss - CCDC65 ENSG00000139537 CDS Human protein_coding chr12:49298804 chr12:49298806 synonymous SNV . 0 23 hm5C_associated_SNPs_71302 0 0 0 0 2 CCDC65 chr12:49298896 5'GT 49298896 Upstream 91bp
chr17 19470503 19470503 1 + G T LUSC 19470501 + 19470481 19470521 41 TATGTGGTTGGCCTCCCCATCGGGATCGCGCTGATGTTTGC TATGTGGTTGGCCTCCCCATCGTGATCGCGCTGATGTTTGC < 41bp 0.893697696542654 0.657553561698188 0.90728915 0.39905587 prediction 0.472288269688931 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19470501 chr17:19470503 nonsynonymous SNV 0.098 4 23 hm5C_associated_SNPs_71303 0 0 1 0 2 SLC47A1 chr17:19470409 3'AG 19470409 Downstream 95bp
chr17 19470503 19470503 1 + G T LUSC 19470501 + 19470481 19470521 41 TATGTGGTTGGCCTCCCCATCGGGATCGCGCTGATGTTTGC TATGTGGTTGGCCTCCCCATCGTGATCGCGCTGATGTTTGC < 41bp 0.893697696542654 0.657553561698188 0.90728915 0.39905587 prediction 0.472288269688931 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19470501 chr17:19470503 nonsynonymous SNV 0.098 4 23 hm5C_associated_SNPs_71303 0 0 1 0 2 SLC47A1 chr17:19470541 5'GT 19470541 Upstream 39bp
chr21 42798173 42798173 1 + A C rs464138 42798172 + 42798152 42798192 41 CGAGAGCGGAGGCCGCACTCCAGCACTGCGCAGGGACCGGT CGAGAGCGGAGGCCGCACTCCCGCACTGCGCAGGGACCGGT < 41bp 0.742409488474736 0.506265932824327 0.07159886 0.11796209 prediction 0.472287111300819 Functional Loss - MX1 ENSG00000157601 UTR5 Human protein_coding chr21:42798172 chr21:42798173 . . 0 22 hm5C_associated_SNPs_71304 0 0 0 0 1 MX1 chr21:42798190 5'GT 42798190 Upstream 18bp
chr1 161179294 161179294 1 + G A UCEC 161179291 + 161179271 161179311 41 AGTGCTGTTTGGAGAAATCACACGTTTGTTGAACCACATCA AGTGCTGTTTGGAGAAATCACACATTTGTTGAACCACATCA < 41bp 0.740212902975565 0.504071182597803 0.21464819 0.06227854 prediction 0.472283440755523 Functional Loss - NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161179291 chr1:161179294 nonsynonymous SNV 0.740 5 24 hm5C_associated_SNPs_71305 0 0 1 0 2 NDUFS2 chr1:161179273 3'AG 161179273 Downstream 22bp
chr1 161179294 161179294 1 + G A UCEC 161179291 + 161179271 161179311 41 AGTGCTGTTTGGAGAAATCACACGTTTGTTGAACCACATCA AGTGCTGTTTGGAGAAATCACACATTTGTTGAACCACATCA < 41bp 0.740212902975565 0.504071182597803 0.21464819 0.06227854 prediction 0.472283440755523 Functional Loss - NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161179291 chr1:161179294 nonsynonymous SNV 0.740 5 24 hm5C_associated_SNPs_71305 0 0 1 0 2 NDUFS2 chr1:161179385 5'GT 161179385 Upstream 92bp
chr10 81371617 81371617 1 + G A HNSC 81371614 + 81371594 81371634 41 CCTCTGGCCCTCAACCTCATCTTGATGGCAGCCTCTGGTGC CCTCTGGCCCTCAACCTCATCTTAATGGCAGCCTCTGGTGC < 41bp 0.763577011997126 0.52743544775152 0.1729159 0.13537621 prediction 0.472283128491211 Functional Loss - SFTPA1 ENSG00000122852 CDS Human protein_coding chr10:81371614 chr10:81371617 synonymous SNV . 0 24 hm5C_associated_SNPs_71306 0 0 0 0 1 SFTPA1 chr10:81371559 3'AG 81371559 Downstream 59bp
chr22 35812650 35812650 1 + T C LIHC 35812649 + 35812629 35812669 41 AGGCTGGGATCACCACCACCCTGAACTCCCGCTGCTCCGTC AGGCTGGGATCACCACCACCCCGAACTCCCGCTGCTCCGTC < 41bp 0.790344296075894 0.554205015011096 0.24370643 0.29278165 prediction 0.472278562129596 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35812649 chr22:35812650 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_71307 0 0 1 2 1 MCM5 chr22:35812631 3'AG 35812631 Downstream 20bp
chr17 32957120 32957120 1 + G T LUAD 32957117 + 32957097 32957137 41 TCGAGGTGAATGGCCTCGTCCTGGACATCTCCGCCCTAGTG TCGAGGTGAATGGCCTCGTCCTGTACATCTCCGCCCTAGTG < 41bp 0.736138797807202 0.339352703178742 0.12356943 0.009587109 prediction 0.472277595614405 Functional Loss - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32957117 chr17:32957120 nonsynonymous SNV 0.293 4 24 hm5C_associated_SNPs_71308 0 0 0 0 2 TMEM132E chr17:32957027 3'AG 32957027 Downstream 94bp
chr17 32957120 32957120 1 + G T LUAD 32957117 + 32957097 32957137 41 TCGAGGTGAATGGCCTCGTCCTGGACATCTCCGCCCTAGTG TCGAGGTGAATGGCCTCGTCCTGTACATCTCCGCCCTAGTG < 41bp 0.736138797807202 0.339352703178742 0.12356943 0.009587109 prediction 0.472277595614405 Functional Loss - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32957117 chr17:32957120 nonsynonymous SNV 0.293 4 24 hm5C_associated_SNPs_71308 0 0 0 0 2 TMEM132E chr17:32957170 5'GT 32957170 Upstream 51bp
chr16 72048500 72048500 1 + T C COAD 72048499 + 72048479 72048519 41 TGTTGAGATAGGAAGTGTGACTCCAAAACCTCAGGAAGGAA TGTTGAGATAGGAAGTGTGACCCCAAAACCTCAGGAAGGAA < 41bp 0.736138239958453 0.46305535506016 0.95983714 0.27428415 prediction 0.472276479916907 Functional Loss - DHODH ENSG00000102967 CDS Human protein_coding chr16:72048499 chr16:72048500 synonymous SNV . 0 22 hm5C_associated_SNPs_71310 0 0 1 0 1 DHODH chr16:72048571 5'GT 72048571 Upstream 72bp
chr5 640714 640714 1 + G C BLCA 640710 + 640690 640730 41 GCGGAGCTGCACCACACACACAAGGAGCTGGTGAGCCCGCC GCGGAGCTGCACCACACACACAAGCAGCTGGTGAGCCCGCC < 41bp 0.822832145018918 0.586702112183493 0.88724375 0.61662567 prediction 0.472260065670851 Functional Loss - CEP72 ENSG00000112877 CDS Human protein_coding chr5:640710 chr5:640714 nonsynonymous SNV 0.629 2 25 hm5C_associated_SNPs_71311 0 0 1 0 1 CEP72 chr5:640719 5'GT 640719 Upstream 6bp
chr19 7505367 7505367 1 + G A rs115555106 7505364 + 7505344 7505384 41 CGGCTGGCCCTGGGACGCAACTCGGGTAAGCCAGGGTCCCC CGGCTGGCCCTGGGACGCAACTCAGGTAAGCCAGGGTCCCC < 41bp 0.769608916839952 0.533484720916323 0.5461146 0.3727576 prediction 0.472248391847258 Functional Loss - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7505364 chr19:7505367 nonsynonymous SNV 0.453 4 24 hm5C_associated_SNPs_71313 0 0 0 0 1 ARHGEF18 chr19:7505368 5'GT 7505368 Upstream 2bp
chr10 75519806 75519806 1 + G A SKCM 75519803 + 75519783 75519823 41 AACATCGCTGGCTTCAGCCTCAGGAAGTTTCCCTAACTCTG AACATCGCTGGCTTCAGCCTCAGAAAGTTTCCCTAACTCTG < 41bp 0.738682455942587 0.502560040068085 0.93348646 0.9174656 prediction 0.472244831749004 Functional Loss - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75519803 chr10:75519806 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_71314 0 0 1 0 1 SEC24C chr10:75519776 3'AG 75519776 Downstream 31bp
chr5 94749827 94749827 1 + G T UCEC 94749825 + 94749805 94749845 41 CGAAAAGAGGAATCGCTCGCCAGGAAGTTACTGGAAAGCCA CGAAAAGAGGAATCGCTCGCCATGAAGTTACTGGAAAGCCA < 41bp 0.869988888244215 0.633874177715324 0.39503694 0.16032541 prediction 0.472229421057782 Functional Loss - FAM81B ENSG00000153347 CDS Human protein_coding chr5:94749825 chr5:94749827 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_71317 0 0 0 0 1 FAM81B chr5:94749894 5'GT 94749894 Upstream 68bp
chr2 219486299 219486299 1 + G T UCEC 219486296 + 219486276 219486316 41 TAATGAATGTGGAAATGGACCAAGAATATGCCTTCAGTCTT TAATGAATGTGGAAATGGACCAATAATATGCCTTCAGTCTT < 41bp 0.736108301123311 0.343558340179419 0.37965068 0.2931801 prediction 0.472216602246621 Functional Loss - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219486296 chr2:219486299 stopgain 0.999 0 24 hm5C_associated_SNPs_71320 0 0 0 0 1 PLCD4 chr2:219486322 5'GT 219486322 Upstream 24bp
chr22 41623175 41623175 1 + C T BRCA 41623173 + 41623153 41623193 41 CCCCGGCTCATCTGTGTGGCCACGGTGAAACGAGTGGTGCA CCCCGGCTCATCTGTGTGGCCATGGTGAAACGAGTGGTGCA < 41bp 0.8169020204498 0.580794006120656 0.58124954 0.51542395 prediction 0.472216028658288 Functional Loss - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41623173 chr22:41623175 nonsynonymous SNV 0.956 4 23 hm5C_associated_SNPs_71321 0 0 1 0 1 L3MBTL2 chr22:41623093 3'AG 41623093 Downstream 83bp
chr2 68765324 68765324 1 + G A BRCA 68765321 + 68765301 68765341 41 GGTTCTGAAGGAAACAAGGTCAAGAGGACATCCTGCATGTA GGTTCTGAAGGAAACAAGGTCAAAAGGACATCCTGCATGTA < 41bp 0.738947156458366 0.50284104298552 0.45262378 0.10719776 prediction 0.472212226945693 Functional Loss - APLF ENSG00000169621 CDS Human protein_coding chr2:68765321 chr2:68765324 synonymous SNV . 0 24 hm5C_associated_SNPs_71322 0 0 0 0 1 APLF chr2:68765359 5'GT 68765359 Upstream 36bp
chr15 91346807 91346807 1 + C T COAD 91346805 + 91346785 91346825 41 TGGAAAAGGATCTGCTTATTCACGACACAATGCCGAAAGAC TGGAAAAGGATCTGCTTATTCATGACACAATGCCGAAAGAC < 41bp 0.839437026468988 0.603332190295777 0.10909209 0.11265537 prediction 0.472209672346422 Functional Loss - BLM ENSG00000197299 CDS Human protein_coding chr15:91346805 chr15:91346807 stopgain 1.000 1 23 hm5C_associated_SNPs_71323 1 0 1 0 1 BLM chr15:91346751 3'AG 91346751 Downstream 57bp
chr21 45709652 45709652 1 + G T LUAD 45709650 + 45709630 45709670 41 GCAGCAGTGGCCCGAAGCCTCTGGTTCGAGCCAAGGGAGCC GCAGCAGTGGCCCGAAGCCTCTTGTTCGAGCCAAGGGAGCC < 41bp 0.73610415955562 0.377519091029915 0.15665984 0.045545936 prediction 0.472208319111241 Functional Loss - AIRE ENSG00000160224 CDS Human protein_coding chr21:45709650 chr21:45709652 synonymous SNV . 0 23 hm5C_associated_SNPs_71324 0 0 0 0 1 AIRE chr21:45709685 5'GT 45709685 Upstream 34bp
chr17 1939270 1939270 1 + G A COAD 1939267 + 1939247 1939287 41 CGCCCCTGTGCCCGCAGGTTCACGGAGGCCGAAGTGATGGT CGCCCCTGTGCCCGCAGGTTCACAGAGGCCGAAGTGATGGT < 41bp 0.757205444594721 0.521106313602338 0.62018716 0.3140633 prediction 0.472198261984766 Functional Loss - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1939267 chr17:1939270 synonymous SNV . 0 24 hm5C_associated_SNPs_71326 0 0 1 0 1 DPH1 chr17:1939264 3'AG 1939264 Downstream 7bp
chr1 17586120 17586120 1 + G A GBM 17586117 + 17586097 17586137 41 GTTTGAGGTCTATGGGACGCCTGGCGTGGACATCTACATCT GTTTGAGGTCTATGGGACGCCTGACGTGGACATCTACATCT < 41bp 0.736097521321176 0.495429818446108 0.09243542 0.056223214 prediction 0.472195042642352 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17586117 chr1:17586120 nonsynonymous SNV 0.098 2 24 hm5C_associated_SNPs_71327 0 0 0 0 1 PADI3 chr1:17586073 3'AG 17586073 Downstream 48bp
chr12 119583193 119583193 1 + G T COAD 119583190 + 119583170 119583210 41 GTCTTTTTGCTTTCAGATCACTGGGTCGGGGTCTGCTGCTG GTCTTTTTGCTTTCAGATCACTGTGTCGGGGTCTGCTGCTG < 41bp 0.736091826243378 0.334975361772769 0.69980276 0.021992147 prediction 0.472183652486757 Functional Loss - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119583190 chr12:119583193 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_71329 0 0 1 0 1 SRRM4 chr12:119583186 3'AG 119583186 Downstream 8bp
chr1 155289624 155289624 1 + G C LUAD 155289623 + 155289603 155289643 41 TTTGGGGACCCCAGTGTGACCGGCAAAATTGGCACTGACAT TTTGGGGACCCCAGTGTGACCCGCAAAATTGGCACTGACAT < 41bp 0.863339406063217 0.627248308359677 0.37118047 0.087530345 prediction 0.47218219540708 Functional Loss - FDPS ENSG00000160752 CDS Human protein_coding chr1:155289623 chr1:155289624 nonsynonymous SNV 0.966 4 22 hm5C_associated_SNPs_71330 0 0 1 0 2 FDPS chr1:155289585 3'AG 155289585 Downstream 40bp
chr1 155289624 155289624 1 + G C LUAD 155289623 + 155289603 155289643 41 TTTGGGGACCCCAGTGTGACCGGCAAAATTGGCACTGACAT TTTGGGGACCCCAGTGTGACCCGCAAAATTGGCACTGACAT < 41bp 0.863339406063217 0.627248308359677 0.37118047 0.087530345 prediction 0.47218219540708 Functional Loss - FDPS ENSG00000160752 CDS Human protein_coding chr1:155289623 chr1:155289624 nonsynonymous SNV 0.966 4 22 hm5C_associated_SNPs_71330 0 0 1 0 2 FDPS chr1:155289719 5'GT 155289719 Upstream 96bp
chr11 43775630 43775630 1 + G T SARC 43775628 + 43775608 43775648 41 GGAATGAAGGTTGTCCTTATCAGCAGATCAAAGGATAAACT GGAATGAAGGTTGTCCTTATCATCAGATCAAAGGATAAACT < 41bp 0.879664929781357 0.64357674981934 0.85192096 0.23403835 prediction 0.472176359924035 Functional Loss - HSD17B12 ENSG00000149084 CDS Human protein_coding chr11:43775628 chr11:43775630 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_71331 0 0 1 0 2 HSD17B12 chr11:43775596 3'AG 43775596 Downstream 35bp
chr11 43775630 43775630 1 + G T SARC 43775628 + 43775608 43775648 41 GGAATGAAGGTTGTCCTTATCAGCAGATCAAAGGATAAACT GGAATGAAGGTTGTCCTTATCATCAGATCAAAGGATAAACT < 41bp 0.879664929781357 0.64357674981934 0.85192096 0.23403835 prediction 0.472176359924035 Functional Loss - HSD17B12 ENSG00000149084 CDS Human protein_coding chr11:43775628 chr11:43775630 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_71331 0 0 1 0 2 HSD17B12 chr11:43775671 5'GT 43775671 Upstream 42bp
chr7 99688914 99688914 1 + G A UCEC 99688911 + 99688891 99688931 41 CCATCAAGATGCTGCACAGCCGCGTCAAGCTCATCTTGGAG CCATCAAGATGCTGCACAGCCGCATCAAGCTCATCTTGGAG < 41bp 0.756492868186191 0.520419838403467 0.062678784 0.029293925 prediction 0.472146059565447 Functional Loss - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99688911 chr7:99688914 nonsynonymous SNV 0.930 1 24 hm5C_associated_SNPs_71334 0 0 1 0 2 COPS6 chr7:99688861 3'AG 99688861 Downstream 54bp
chr7 99688914 99688914 1 + G A UCEC 99688911 + 99688891 99688931 41 CCATCAAGATGCTGCACAGCCGCGTCAAGCTCATCTTGGAG CCATCAAGATGCTGCACAGCCGCATCAAGCTCATCTTGGAG < 41bp 0.756492868186191 0.520419838403467 0.062678784 0.029293925 prediction 0.472146059565447 Functional Loss - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99688911 chr7:99688914 nonsynonymous SNV 0.930 1 24 hm5C_associated_SNPs_71334 0 0 1 0 2 COPS6 chr7:99688953 5'GT 99688953 Upstream 40bp
chr14 24647341 24647341 1 + C T COAD 24647339 + 24647319 24647359 41 CTCCTCGCCGCCGCCGTCGTCGCCGGTTACTGTTCTGGGAC CTCCTCGCCGCCGCCGTCGTCGTCGGTTACTGTTCTGGGAC < 41bp 0.834324989196843 0.598255527459012 0.8833516 0.8833482 prediction 0.472138923475661 Functional Loss - REC8 ENSG00000100918 CDS Human protein_coding chr14:24647339 chr14:24647341 synonymous SNV . 0 23 hm5C_associated_SNPs_71335 0 0 0 0 2 REC8 chr14:24647297 3'AG 24647297 Downstream 45bp
chr14 24647341 24647341 1 + C T COAD 24647339 + 24647319 24647359 41 CTCCTCGCCGCCGCCGTCGTCGCCGGTTACTGTTCTGGGAC CTCCTCGCCGCCGCCGTCGTCGTCGGTTACTGTTCTGGGAC < 41bp 0.834324989196843 0.598255527459012 0.8833516 0.8833482 prediction 0.472138923475661 Functional Loss - REC8 ENSG00000100918 CDS Human protein_coding chr14:24647339 chr14:24647341 synonymous SNV . 0 23 hm5C_associated_SNPs_71335 0 0 0 0 2 REC8 chr14:24647428 5'GT 24647428 Upstream 88bp
chr2 197521713 197521713 1 + G T UCEC 197521711 + 197521691 197521731 41 AAGATCGACTGAATGCAATACAGGAAGAGCATTCTAAGGAC AAGATCGACTGAATGCAATACATGAAGAGCATTCTAAGGAC < 41bp 0.73605934211072 0.402891474001489 0.21116146 0.10247156 prediction 0.472118684221441 Functional Loss - CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197521711 chr2:197521713 nonsynonymous SNV 0.783 4 23 hm5C_associated_SNPs_71340 0 0 1 0 1 CCDC150 chr2:197521682 3'AG 197521682 Downstream 32bp
chr11 118509692 118509692 1 + G A UCEC 118509689 + 118509669 118509709 41 TCAGAACGCCTGGCCCGGGACAAGAATGCCTCCTTACAGCT TCAGAACGCCTGGCCCGGGACAAAAATGCCTCCTTACAGCT < 41bp 0.749666072018253 0.513607623077944 0.43571076 0.20059666 prediction 0.472116897880618 Functional Loss - PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118509689 chr11:118509692 synonymous SNV . 0 24 hm5C_associated_SNPs_71342 0 0 1 0 2 PHLDB1 chr11:118509609 3'AG 118509609 Downstream 84bp
chr11 118509692 118509692 1 + G A UCEC 118509689 + 118509669 118509709 41 TCAGAACGCCTGGCCCGGGACAAGAATGCCTCCTTACAGCT TCAGAACGCCTGGCCCGGGACAAAAATGCCTCCTTACAGCT < 41bp 0.749666072018253 0.513607623077944 0.43571076 0.20059666 prediction 0.472116897880618 Functional Loss - PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118509689 chr11:118509692 synonymous SNV . 0 24 hm5C_associated_SNPs_71342 0 0 1 0 2 PHLDB1 chr11:118509719 5'GT 118509719 Upstream 28bp
chr12 57961391 57961391 1 + G A SKCM 57961388 + 57961368 57961408 41 GCTGTATCTGGTGGACCTGGCAGGGAGTGAGAAGGTAGGGG GCTGTATCTGGTGGACCTGGCAGAGAGTGAGAAGGTAGGGG < 41bp 0.773235711851377 0.537178059633204 0.8760711 0.4627314 prediction 0.472115304436345 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57961388 chr12:57961391 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_71343 1 0 1 0 1 KIF5A chr12:57961401 5'GT 57961401 Upstream 11bp
chr11 60468430 60468430 1 + G A rs183590907 60468427 + 60468407 60468447 41 TGACCCCAGGAATTATGTCTCACGTGCCCCTGTATCCAAAC TGACCCCAGGAATTATGTCTCACATGCCCCTGTATCCAAAC < 41bp 0.736057379446304 0.497383095905102 0.09637755 0.038484216 prediction 0.472114758892607 Functional Loss - MS4A8 ENSG00000166959 CDS Human protein_coding chr11:60468427 chr11:60468430 nonsynonymous SNV 0.012 1 24 hm5C_associated_SNPs_71344 0 0 0 0 1 MS4A8 chr11:60468333 3'AG 60468333 Downstream 98bp
chr11 60468429 60468429 1 + C T LUSC 60468427 + 60468407 60468447 41 TGACCCCAGGAATTATGTCTCACGTGCCCCTGTATCCAAAC TGACCCCAGGAATTATGTCTCATGTGCCCCTGTATCCAAAC < 41bp 0.736057379446304 0.481183361027392 0.09637755 0.113483846 prediction 0.472114758892607 Functional Loss - MS4A8 ENSG00000166959 CDS Human protein_coding chr11:60468427 chr11:60468429 synonymous SNV . 0 23 hm5C_associated_SNPs_71345 0 0 0 0 1 MS4A8 chr11:60468333 3'AG 60468333 Downstream 97bp
chr9 136501796 136501796 1 + G T SARC 136501793 + 136501773 136501813 41 GAGCTTGAGAACGCAGATCTCGTGGTGCTCTGGACCGATGG GAGCTTGAGAACGCAGATCTCGTTGTGCTCTGGACCGATGG < 41bp 0.736053870962468 0.337471225737352 0.91847205 0.39592928 prediction 0.472107741924936 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136501793 chr9:136501796 synonymous SNV . 0 24 hm5C_associated_SNPs_71347 0 0 0 0 1 DBH chr9:136501832 5'GT 136501832 Upstream 37bp
chr6 43222323 43222323 1 + G A SKCM 43222320 + 43222300 43222340 41 GGCAGGCTGCCCTCCACCTACAGGAAGTGCTATATGCTGGA GGCAGGCTGCCCTCCACCTACAGAAAGTGCTATATGCTGGA < 41bp 0.755468712216864 0.519416897174949 0.89432216 0.6563857 prediction 0.472103630083829 Functional Loss - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43222320 chr6:43222323 synonymous SNV . 0 24 hm5C_associated_SNPs_71348 0 0 0 0 2 TTBK1 chr6:43222285 3'AG 43222285 Downstream 39bp
chr6 43222323 43222323 1 + G A SKCM 43222320 + 43222300 43222340 41 GGCAGGCTGCCCTCCACCTACAGGAAGTGCTATATGCTGGA GGCAGGCTGCCCTCCACCTACAGAAAGTGCTATATGCTGGA < 41bp 0.755468712216864 0.519416897174949 0.89432216 0.6563857 prediction 0.472103630083829 Functional Loss - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43222320 chr6:43222323 synonymous SNV . 0 24 hm5C_associated_SNPs_71348 0 0 0 0 2 TTBK1 chr6:43222389 5'GT 43222389 Upstream 67bp
chr20 20232339 20232339 1 + G A COAD 20232336 + 20232316 20232356 41 GCATAGACCGAGCAGCCAAGCACGTTGTGCTTTCCACGGAC GCATAGACCGAGCAGCCAAGCACATTGTGCTTTCCACGGAC < 41bp 0.736051007402819 0.488184866579357 0.3489859 0.19471577 prediction 0.472102014805638 Functional Loss - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20232336 chr20:20232339 nonsynonymous SNV 0.692 1 24 hm5C_associated_SNPs_71350 0 0 0 0 1 CFAP61 chr20:20232407 5'GT 20232407 Upstream 69bp
chr1 1120479 1120479 1 + C T SKCM 1120477 + 1120457 1120497 41 CTCGCCAAGGACTGGGTCTTCACCACCCTCAAGGTGCGTCC CTCGCCAAGGACTGGGTCTTCATCACCCTCAAGGTGCGTCC < 41bp 0.824964042727644 0.5889158987926 0.2704838 0.2266523 prediction 0.472096287870089 Functional Loss - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1120477 chr1:1120479 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_71352 0 0 0 0 1 TTLL10 chr1:1120489 5'GT 1120489 Upstream 11bp
chr19 58152147 58152147 1 + G T STAD 58152145 + 58152125 58152165 41 GGAGAAAGAGTGCCACAGTTCAGGACTTCCAAAGAAGGTTC GGAGAAAGAGTGCCACAGTTCATGACTTCCAAAGAAGGTTC < 41bp 0.873925938504706 0.637883759222527 0.35436267 0.056659907 prediction 0.472084358564358 Functional Loss - ZNF211 ENSG00000121417 CDS Human protein_coding chr19:58152145 chr19:58152147 nonsynonymous SNV 0.200 2 23 hm5C_associated_SNPs_71353 0 0 1 0 1 ZNF211 chr19:58152072 3'AG 58152072 Downstream 76bp
chr2 74687401 74687401 1 + G T UCEC 74687398 + 74687378 74687418 41 ACGAGGATGTGGTTCACCGCCCAGGCACACCACCCCCCCCT ACGAGGATGTGGTTCACCGCCCATGCACACCACCCCCCCCT < 41bp 0.736039294471592 0.339127653408113 0.056052446 0.022338301 prediction 0.472078588943183 Functional Loss - WBP1 ENSG00000239779 CDS Human protein_coding chr2:74687398 chr2:74687401 nonsynonymous SNV 0.976 2 24 hm5C_associated_SNPs_71355 0 0 1 0 1 WBP1 chr2:74687348 3'AG 74687348 Downstream 54bp
chrX 152113884 152113884 1 + C T COAD 152113882 + 152113862 152113902 41 CTGGCAGGAGAGGCCTGGAGCTCCAAGAGGTGGCCAAGGAG CTGGCAGGAGAGGCCTGGAGCTTCAAGAGGTGGCCAAGGAG < 41bp 0.813032525137528 0.576996303775654 0.90621924 0.47049734 prediction 0.472072442723747 Functional Loss - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152113882 chrX:152113884 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_71356 0 0 0 0 1 ZNF185 chrX:152113811 3'AG 152113811 Downstream 74bp
chr22 46671279 46671279 1 + G A UCEC 46671276 + 46671256 46671296 41 ACAGATGAGAGATTCTGTTGCTCGAATTTACCCCTTCTGGA ACAGATGAGAGATTCTGTTGCTCAAATTTACCCCTTCTGGA < 41bp 0.736030940771158 0.497422547956453 0.05947268 0.05255115 prediction 0.472061881542316 Functional Loss - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46671276 chr22:46671279 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_71360 0 0 1 0 1 TTC38 chr22:46671318 5'GT 46671318 Upstream 40bp
chr7 155090062 155090062 1 + C T SKCM 155090060 + 155090040 155090080 41 CAGCGCGAGGCGCCGAGGCCCCCCGCGAGCCAGCGCCGCGG CAGCGCGAGGCGCCGAGGCCCCTCGCGAGCCAGCGCCGCGG < 41bp 0.772575498176779 0.536546722266916 0.13736251 0.13886654 prediction 0.472057551819726 Functional Loss - INSIG1 ENSG00000186480 CDS Human protein_coding chr7:155090060 chr7:155090062 nonsynonymous SNV 0.006 0 23 hm5C_associated_SNPs_71361 0 0 1 0 1 INSIG1 chr7:155089969 3'AG 155089969 Downstream 94bp
chr2 1497754 1497754 1 + G A SKCM 1497751 + 1497731 1497771 41 CTTCCTCCCCAGGGCTCGGACAGGGCCCCTGTTTGCCTGTC CTTCCTCCCCAGGGCTCGGACAGAGCCCCTGTTTGCCTGTC < 41bp 0.760377505324382 0.524349219012975 0.89465976 0.59458494 prediction 0.472056572622815 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1497751 chr2:1497754 nonsynonymous SNV 0.023 5 24 hm5C_associated_SNPs_71362 0 0 0 0 1 TPO chr2:1497811 5'GT 1497811 Upstream 58bp
chr20 57598583 57598583 1 + G T UCEC 57598580 + 57598560 57598600 41 CCCGAGCAGTCTTGGTGGACCTAGAACCTGGGACGATGGAC CCCGAGCAGTCTTGGTGGACCTATAACCTGGGACGATGGAC < 41bp 0.736026741990114 0.344028448777038 0.16939086 0.17698157 prediction 0.472053483980227 Functional Loss - TUBB1 ENSG00000101162 CDS Human protein_coding chr20:57598580 chr20:57598583 stopgain 0.999 1 24 hm5C_associated_SNPs_71363 0 0 1 0 2 TUBB1 chr20:57598545 3'AG 57598545 Downstream 39bp
chr20 57598583 57598583 1 + G T UCEC 57598580 + 57598560 57598600 41 CCCGAGCAGTCTTGGTGGACCTAGAACCTGGGACGATGGAC CCCGAGCAGTCTTGGTGGACCTATAACCTGGGACGATGGAC < 41bp 0.736026741990114 0.344028448777038 0.16939086 0.17698157 prediction 0.472053483980227 Functional Loss - TUBB1 ENSG00000101162 CDS Human protein_coding chr20:57598580 chr20:57598583 stopgain 0.999 1 24 hm5C_associated_SNPs_71363 0 0 1 0 2 TUBB1 chr20:57598655 5'GT 57598655 Upstream 73bp
chr10 73983730 73983730 1 + G T SKCM 73983728 + 73983708 73983748 41 GGTCAGTGGAAGTTCTGTCACTGGATCTGGTTTCAGTGTCT GGTCAGTGGAAGTTCTGTCACTTGATCTGGTTTCAGTGTCT < 41bp 0.875388119145556 0.639363023828366 0.4655649 0.16797927 prediction 0.47205019063438 Functional Loss - ANAPC16 ENSG00000166295 CDS Human protein_coding chr10:73983728 chr10:73983730 stopgain 1.000 1 23 hm5C_associated_SNPs_71365 0 0 1 0 2 ANAPC16 chr10:73983646 3'AG 73983646 Downstream 85bp
chr10 73983730 73983730 1 + G T SKCM 73983728 + 73983708 73983748 41 GGTCAGTGGAAGTTCTGTCACTGGATCTGGTTTCAGTGTCT GGTCAGTGGAAGTTCTGTCACTTGATCTGGTTTCAGTGTCT < 41bp 0.875388119145556 0.639363023828366 0.4655649 0.16797927 prediction 0.47205019063438 Functional Loss - ANAPC16 ENSG00000166295 CDS Human protein_coding chr10:73983728 chr10:73983730 stopgain 1.000 1 23 hm5C_associated_SNPs_71365 0 0 1 0 2 ANAPC16 chr10:73983814 5'GT 73983814 Upstream 85bp
chr20 39974574 39974574 1 + G T LUAD 39974572 + 39974552 39974592 41 AAGCAGGTGGACGGCTCGTTCCGGTGCTCACCCTTCCACGT AAGCAGGTGGACGGCTCGTTCCTGTGCTCACCCTTCCACGT < 41bp 0.736023080930976 0.369565500798139 0.8842743 0.024096817 prediction 0.472046161861952 Functional Loss - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39974572 chr20:39974574 nonsynonymous SNV 0.009 0 23 hm5C_associated_SNPs_71368 0 0 0 0 1 LPIN3 chr20:39974635 5'GT 39974635 Upstream 62bp
chr20 39974575 39974575 1 + G T LUAD 39974572 + 39974552 39974592 41 AAGCAGGTGGACGGCTCGTTCCGGTGCTCACCCTTCCACGT AAGCAGGTGGACGGCTCGTTCCGTTGCTCACCCTTCCACGT < 41bp 0.736023080930976 0.32787882066318 0.8842743 0.13454524 prediction 0.472046161861952 Functional Loss - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39974572 chr20:39974575 synonymous SNV . 0 24 hm5C_associated_SNPs_71369 0 0 0 0 1 LPIN3 chr20:39974635 5'GT 39974635 Upstream 61bp
chr17 40666449 40666449 1 + G A rs148307432 40666446 + 40666426 40666466 41 CTCCTGATCATGGAGGGCCTCTCGGCCTTTCTCCACGCACT CTCCTGATCATGGAGGGCCTCTCAGCCTTTCTCCACGCACT < 41bp 0.746285303322866 0.510264655383887 0.2661367 0.15051103 prediction 0.472041295877957 Functional Loss - ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40666446 chr17:40666449 synonymous SNV . 0 24 hm5C_associated_SNPs_71371 0 0 1 0 1 ATP6V0A1 chr17:40666478 5'GT 40666478 Upstream 30bp
chr3 52811680 52811680 1 + G A UCEC 52811677 + 52811657 52811697 41 GGCTGCTGTTGTGCATGTACCTGGTATCTCTCCTCATCCTG GGCTGCTGTTGTGCATGTACCTGATATCTCTCCTCATCCTG < 41bp 0.736018119920783 0.482534307141 0.5031866 0.31779218 prediction 0.472036239841566 Functional Loss - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52811677 chr3:52811680 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_71372 0 0 0 1 1 ITIH1 chr3:52811748 5'GT 52811748 Upstream 69bp
chr6 130460836 130460836 1 + A C COAD 130460835 + 130460815 130460855 41 ATTAAACTGGGCCCTGCTCTCAAAATTTTCAATTCCATCCT ATTAAACTGGGCCCTGCTCTCCAAATTTTCAATTCCATCCT < 41bp 0.736008471909837 0.496144495120778 0.394336 0.2356207 prediction 0.472016943819674 Functional Loss - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130460835 chr6:130460836 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_71374 0 0 1 0 1 L3MBTL3 chr6:130460755 3'AG 130460755 Downstream 82bp
chr20 44433951 44433951 1 + G T UCEC 44433949 + 44433929 44433969 41 GGCTTTTACTTTTCAGAGCCCTGGGGATGGGGGGCACCAGA GGCTTTTACTTTTCAGAGCCCTTGGGATGGGGGGCACCAGA < 41bp 0.736007970714734 0.392232262688829 0.5613887 0.13454857 prediction 0.472015941429468 Functional Loss - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44433949 chr20:44433951 synonymous SNV . 0 23 hm5C_associated_SNPs_71375 0 0 1 0 2 DNTTIP1 chr20:44433945 3'AG 44433945 Downstream 7bp
chr20 44433951 44433951 1 + G T UCEC 44433949 + 44433929 44433969 41 GGCTTTTACTTTTCAGAGCCCTGGGGATGGGGGGCACCAGA GGCTTTTACTTTTCAGAGCCCTTGGGATGGGGGGCACCAGA < 41bp 0.736007970714734 0.392232262688829 0.5613887 0.13454857 prediction 0.472015941429468 Functional Loss - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44433949 chr20:44433951 synonymous SNV . 0 23 hm5C_associated_SNPs_71375 0 0 1 0 2 DNTTIP1 chr20:44434005 5'GT 44434005 Upstream 55bp
chr16 67233242 67233242 1 + C T PRAD 67233240 + 67233220 67233260 41 CAGCTGGACCATGGCGCCTCCGCGGAACGTGGTGAAGATTG CAGCTGGACCATGGCGCCTCCGTGGAACGTGGTGAAGATTG < 41bp 0.77596045779442 0.539957513862966 0.53112644 0.40009284 prediction 0.472005887862907 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67233240 chr16:67233242 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_71379 0 0 0 0 1 ELMO3 chr16:67233307 5'GT 67233307 Upstream 66bp
chr19 48879425 48879425 1 + G A LIHC 48879422 + 48879402 48879442 41 CGCTTCCTGGATGAGGGTGGCATGGTGCTGACCACCCTCCC CGCTTCCTGGATGAGGGTGGCATAGTGCTGACCACCCTCCC < 41bp 0.736002895371372 0.494098412286739 0.53395045 0.3277315 prediction 0.472005790742745 Functional Loss - SYNGR4 ENSG00000105467 CDS Human protein_coding chr19:48879422 chr19:48879425 nonsynonymous SNV 0.799 1 24 hm5C_associated_SNPs_71380 0 0 0 0 1 SYNGR4 chr19:48879342 3'AG 48879342 Downstream 84bp
chr19 35523533 35523533 1 + G C BLCA 35523532 + 35523512 35523552 41 ATCTCCTGCAAGCGCCGCAGCGAGACCAACGCTGAGACCTT ATCTCCTGCAAGCGCCGCAGCCAGACCAACGCTGAGACCTT < 41bp 0.736001847721902 0.422575485485005 0.33426446 0.1116398 prediction 0.472003695443804 Functional Loss - SCN1B ENSG00000105711 CDS Human protein_coding chr19:35523532 chr19:35523533 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_71381 0 0 0 0 1 SCN1B chr19:35523598 5'GT 35523598 Upstream 66bp
chr1 156845919 156845919 1 + G A SKCM 156845916 + 156845896 156845936 41 ACATCGTGCTCAAGTGGGAGCTGGGGGAGGGCGCCTTTGGG ACATCGTGCTCAAGTGGGAGCTGAGGGAGGGCGCCTTTGGG < 41bp 0.736001280036253 0.486945412658769 0.87878394 0.8292365 prediction 0.472002560072505 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845916 chr1:156845919 nonsynonymous SNV 0.966 5 24 hm5C_associated_SNPs_71382 0 0 1 0 3 NTRK1 chr1:156845863 3'AG 156845863 Downstream 57bp
chr1 156845919 156845919 1 + G A SKCM 156845916 + 156845896 156845936 41 ACATCGTGCTCAAGTGGGAGCTGGGGGAGGGCGCCTTTGGG ACATCGTGCTCAAGTGGGAGCTGAGGGAGGGCGCCTTTGGG < 41bp 0.736001280036253 0.486945412658769 0.87878394 0.8292365 prediction 0.472002560072505 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845916 chr1:156845919 nonsynonymous SNV 0.966 5 24 hm5C_associated_SNPs_71382 0 0 1 0 3 NTRK1 chr1:156845872 3'AG 156845872 Downstream 48bp
chr1 156845919 156845919 1 + G A SKCM 156845916 + 156845896 156845936 41 ACATCGTGCTCAAGTGGGAGCTGGGGGAGGGCGCCTTTGGG ACATCGTGCTCAAGTGGGAGCTGAGGGAGGGCGCCTTTGGG < 41bp 0.736001280036253 0.486945412658769 0.87878394 0.8292365 prediction 0.472002560072505 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845916 chr1:156845919 nonsynonymous SNV 0.966 5 24 hm5C_associated_SNPs_71382 0 0 1 0 3 NTRK1 chr1:156846002 5'GT 156846002 Upstream 84bp
chr1 228003892 228003892 1 + G A UCEC 228003889 + 228003869 228003909 41 GCGTGCACTACGCAGGCCTCCACGTCTGCGGCGGCTCCATC GCGTGCACTACGCAGGCCTCCACATCTGCGGCGGCTCCATC < 41bp 0.748559129450327 0.512576074674681 0.34738666 0.4507565 prediction 0.471966109551292 Functional Loss - PRSS38 ENSG00000185888 CDS Human protein_coding chr1:228003889 chr1:228003892 nonsynonymous SNV 0.006 1 24 hm5C_associated_SNPs_71394 0 0 0 0 1 PRSS38 chr1:228003953 5'GT 228003953 Upstream 62bp
chr15 91009561 91009561 1 + T C rs551596531 91009560 + 91009540 91009580 41 GTGGTGATGTTGGCAAAACACTGAGTGCCCTTCGCTCCCCT GTGGTGATGTTGGCAAAACACCGAGTGCCCTTCGCTCCCCT < 41bp 0.735979088534512 0.491636525750598 0.83155876 0.77176166 prediction 0.471958177069024 Functional Loss - IQGAP1 ENSG00000140575 CDS Human protein_coding chr15:91009560 chr15:91009561 nonsynonymous SNV 0.972 3 22 hm5C_associated_SNPs_71396 0 0 1 0 1 IQGAP1 chr15:91009501 3'AG 91009501 Downstream 61bp
chr19 49686348 49686348 1 + C T BLCA 49686346 + 49686326 49686366 41 TGCTGGCAGATGTATCTGCTCTCGGACAAGGCCACCTCGCC TGCTGGCAGATGTATCTGCTCTTGGACAAGGCCACCTCGCC < 41bp 0.772454717782017 0.536476052574609 0.2070424 0.13534546 prediction 0.471957330414816 Functional Loss - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49686346 chr19:49686348 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_71397 0 0 1 0 1 TRPM4 chr19:49686335 3'AG 49686335 Downstream 14bp
chr1 44386147 44386147 1 + C T CESC 44386145 + 44386125 44386165 41 AGCCCCCTGAGATTCGAATCCTCAACCCATATTTCATCCAG AGCCCCCTGAGATTCGAATCCTTAACCCATATTTCATCCAG < 41bp 0.754660311867 0.518685403158222 0.1597079 0.17620367 prediction 0.471949817417558 Functional Loss - ST3GAL3 ENSG00000126091 CDS Human protein_coding chr1:44386145 chr1:44386147 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_71399 0 0 1 0 1 ST3GAL3 chr1:44386222 5'GT 44386222 Upstream 76bp
chr10 5948509 5948509 1 + G A UCEC 5948506 + 5948486 5948526 41 TGCCTAGTGAGGTCCTGAGGCACGTGTTTGCCTTCCTCCCG TGCCTAGTGAGGTCCTGAGGCACATGTTTGCCTTCCTCCCG < 41bp 0.735967895545401 0.491165703011538 0.4500393 0.27273345 prediction 0.471935791090802 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5948506 chr10:5948509 nonsynonymous SNV 0.799 2 24 hm5C_associated_SNPs_71402 0 0 1 0 1 FBXO18 chr10:5948595 5'GT 5948595 Upstream 87bp
chr21 47538972 47538972 1 + G A THCA 47538969 + 47538949 47538989 41 TCAAGGCAACAGTGGAGCCCCAGGAAGTCCTGGTGTGAAAG TCAAGGCAACAGTGGAGCCCCAGAAAGTCCTGGTGTGAAAG < 41bp 0.765346083948719 0.529379976569342 0.8716566 0.41822633 prediction 0.471932214758755 Functional Loss - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47538969 chr21:47538972 nonsynonymous SNV 0.346 5 24 hm5C_associated_SNPs_71403 0 0 0 0 2 COL6A2 chr21:47538944 3'AG 47538944 Downstream 29bp
chr21 47538972 47538972 1 + G A THCA 47538969 + 47538949 47538989 41 TCAAGGCAACAGTGGAGCCCCAGGAAGTCCTGGTGTGAAAG TCAAGGCAACAGTGGAGCCCCAGAAAGTCCTGGTGTGAAAG < 41bp 0.765346083948719 0.529379976569342 0.8716566 0.41822633 prediction 0.471932214758755 Functional Loss - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47538969 chr21:47538972 nonsynonymous SNV 0.346 5 24 hm5C_associated_SNPs_71403 0 0 0 0 2 COL6A2 chr21:47539033 5'GT 47539033 Upstream 62bp
chr17 37899223 37899223 1 + G A UCEC 37899220 + 37899200 37899240 41 CAGCAGGTGCCACAGCTCGCCACGTGTGTGAAATGCTGGTG CAGCAGGTGCCACAGCTCGCCACATGTGTGAAATGCTGGTG < 41bp 0.735965325603851 0.495238269782725 0.8892564 0.9063327 prediction 0.471930651207701 Functional Loss - GRB7 ENSG00000141738 CDS Human protein_coding chr17:37899220 chr17:37899223 nonsynonymous SNV 0.425 3 24 hm5C_associated_SNPs_71404 0 0 1 0 2 GRB7 chr17:37899151 3'AG 37899151 Downstream 73bp
chr17 37899223 37899223 1 + G A UCEC 37899220 + 37899200 37899240 41 CAGCAGGTGCCACAGCTCGCCACGTGTGTGAAATGCTGGTG CAGCAGGTGCCACAGCTCGCCACATGTGTGAAATGCTGGTG < 41bp 0.735965325603851 0.495238269782725 0.8892564 0.9063327 prediction 0.471930651207701 Functional Loss - GRB7 ENSG00000141738 CDS Human protein_coding chr17:37899220 chr17:37899223 nonsynonymous SNV 0.425 3 24 hm5C_associated_SNPs_71404 0 0 1 0 2 GRB7 chr17:37899307 5'GT 37899307 Upstream 85bp
chrX 119005903 119005903 1 + C T BLCA 119005901 + 119005881 119005921 41 TTCGAGATTCTCCCCGGACTCTCCGTCATGGGCGTGTGCTT TTCGAGATTCTCCCCGGACTCTTCGTCATGGGCGTGTGCTT < 41bp 0.799225287635377 0.563260467554037 0.033379793 0.011497766 prediction 0.47192964016268 Functional Loss - NDUFA1 ENSG00000125356 CDS Human protein_coding chrX:119005901 chrX:119005903 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_71405 0 0 1 0 1 NDUFA1 chrX:119005976 5'GT 119005976 Upstream 74bp
chr19 55054613 55054613 1 + G A rs530757640 55054610 + 55054590 55054630 41 ACCATGGCAAACACAGAGCCCACGGAAGGCCAACGGACGGA ACCATGGCAAACACAGAGCCCACAGAAGGCCAACGGACGGA < 41bp 0.745957916727871 0.509994809629022 0.173363 0.052006364 prediction 0.471926214197699 Functional Loss - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55054610 chr19:55054613 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_71406 0 0 0 0 2 KIR3DX1 chr19:55054585 3'AG 55054585 Downstream 29bp
chr19 55054613 55054613 1 + G A rs530757640 55054610 + 55054590 55054630 41 ACCATGGCAAACACAGAGCCCACGGAAGGCCAACGGACGGA ACCATGGCAAACACAGAGCCCACAGAAGGCCAACGGACGGA < 41bp 0.745957916727871 0.509994809629022 0.173363 0.052006364 prediction 0.471926214197699 Functional Loss - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55054610 chr19:55054613 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_71406 0 0 0 0 2 KIR3DX1 chr19:55054637 5'GT 55054637 Upstream 25bp
chr15 25442616 25442616 1 + A T STAD 25442612 + 25442592 25442632 41 GGTGCTTAGCCCCTGGTAATCTGAAGCTCAGGCCCTTCCTG GGTGCTTAGCCCCTGGTAATCTGATGCTCAGGCCCTTCCTG < 41bp 0.793522001111233 0.557566562607822 0.87016225 0.861742 prediction 0.471910877006823 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25442612 chr15:25442616 . . 0 25 hm5C_associated_SNPs_71407 0 0 0 0 2 SNHG14 chr15:25442529 3'AG 25442529 Downstream 88bp
chr15 25442616 25442616 1 + A T STAD 25442612 + 25442592 25442632 41 GGTGCTTAGCCCCTGGTAATCTGAAGCTCAGGCCCTTCCTG GGTGCTTAGCCCCTGGTAATCTGATGCTCAGGCCCTTCCTG < 41bp 0.793522001111233 0.557566562607822 0.87016225 0.861742 prediction 0.471910877006823 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25442612 chr15:25442616 . . 0 25 hm5C_associated_SNPs_71407 0 0 0 0 2 SNHG14 chr15:25442660 5'GT 25442660 Upstream 45bp
chr8 35542123 35542123 1 + A T STAD 35542119 + 35542099 35542139 41 GTGAATGGAGGCTGGTCTTCCTGGACAGAGTGGTCAGCCTG GTGAATGGAGGCTGGTCTTCCTGGTCAGAGTGGTCAGCCTG < 41bp 0.869006604997178 0.633053001885675 0.21222693 0.16002312 prediction 0.471907206223007 Functional Loss - UNC5D ENSG00000156687 CDS Human protein_coding chr8:35542119 chr8:35542123 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_71409 0 0 0 0 1 UNC5D chr8:35542100 3'AG 35542100 Downstream 24bp
chr16 76482723 76482723 1 + G A UCEC 76482720 + 76482700 76482740 41 ATCTCACCCTGGGCAGCCTGCTAGATGATCAGCATTGGCAT ATCTCACCCTGGGCAGCCTGCTAAATGATCAGCATTGGCAT < 41bp 0.749389024809037 0.513438962981676 0.110813856 0.075525165 prediction 0.471900123654723 Functional Loss - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76482720 chr16:76482723 nonsynonymous SNV 0.993 0 24 hm5C_associated_SNPs_71411 0 0 0 0 1 CNTNAP4 chr16:76482664 3'AG 76482664 Downstream 60bp
chr4 187130329 187130329 1 + C T UCEC 187130327 + 187130307 187130347 41 ATCCGAGATACTTCCCCAACCCCGAGGAGTTCCAGCCTGAG ATCCGAGATACTTCCCCAACCCTGAGGAGTTCCAGCCTGAG < 41bp 0.735944950646145 0.45134757593061 0.047554404 0.05737406 prediction 0.47188990129229 Functional Loss - CYP4V2 ENSG00000145476;ENSG00000164344 CDS Human other chr4:187130327 chr4:187130329 synonymous SNV . 0 23 hm5C_associated_SNPs_71415 0 0 1 0 2 CYP4V2 chr4:187130247 3'AG 187130247 Downstream 83bp
chr4 187130329 187130329 1 + C T UCEC 187130327 + 187130307 187130347 41 ATCCGAGATACTTCCCCAACCCCGAGGAGTTCCAGCCTGAG ATCCGAGATACTTCCCCAACCCTGAGGAGTTCCAGCCTGAG < 41bp 0.735944950646145 0.45134757593061 0.047554404 0.05737406 prediction 0.47188990129229 Functional Loss - CYP4V2 ENSG00000145476;ENSG00000164344 CDS Human other chr4:187130327 chr4:187130329 synonymous SNV . 0 23 hm5C_associated_SNPs_71415 0 0 1 0 2 CYP4V2 chr4:187130426 5'GT 187130426 Upstream 98bp
chr2 27307392 27307392 1 + G A STAD 27307389 + 27307369 27307409 41 GACGGGCAAGAGGGCCCCATCGGGCCACCAGGTATGTGCAC GACGGGCAAGAGGGCCCCATCGGACCACCAGGTATGTGCAC < 41bp 0.765250115302213 0.529305452299548 0.9370615 0.9221883 prediction 0.47188932600533 Functional Loss - EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27307389 chr2:27307392 synonymous SNV . 0 24 hm5C_associated_SNPs_71416 0 0 0 0 1 EMILIN1 chr2:27307399 5'GT 27307399 Upstream 8bp
chr8 11615827 11615827 1 + G A STAD 11615824 + 11615804 11615844 41 GTTCTCAGTCAGTGCGATGTCTGGCCATGGGCCCTCCATCC GTTCTCAGTCAGTGCGATGTCTGACCATGGGCCCTCCATCC < 41bp 0.754040972103131 0.518100034475602 0.046759456 0.02672702 prediction 0.471881875255057 Functional Loss - GATA4 ENSG00000136574 CDS Human protein_coding chr8:11615824 chr8:11615827 nonsynonymous SNV 0.925 1 24 hm5C_associated_SNPs_71418 0 0 1 0 1 GATA4 chr8:11615802 3'AG 11615802 Downstream 26bp
chr2 3727534 3727534 1 + C T COAD 3727532 + 3727512 3727552 41 GACGTGGACGTTTCTTACTTCACGGGAGATTACGCTCCTCG GACGTGGACGTTTCTTACTTCATGGGAGATTACGCTCCTCG < 41bp 0.776970870124884 0.541031221973879 0.61458814 0.9014683 prediction 0.471879296302009 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3727532 chr2:3727534 nonsynonymous SNV 0.006 1 23 hm5C_associated_SNPs_71419 0 0 0 0 2 ALLC chr2:3727459 3'AG 3727459 Downstream 76bp
chr2 3727534 3727534 1 + C T COAD 3727532 + 3727512 3727552 41 GACGTGGACGTTTCTTACTTCACGGGAGATTACGCTCCTCG GACGTGGACGTTTCTTACTTCATGGGAGATTACGCTCCTCG < 41bp 0.776970870124884 0.541031221973879 0.61458814 0.9014683 prediction 0.471879296302009 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3727532 chr2:3727534 nonsynonymous SNV 0.006 1 23 hm5C_associated_SNPs_71419 0 0 0 0 2 ALLC chr2:3727584 5'GT 3727584 Upstream 51bp
chr4 152025340 152025340 1 + G T UCEC 152025338 + 152025318 152025358 41 CTGGTTTGCAGGATTCCAGACAGCATTGGAAAAGACATAGA CTGGTTTGCAGGATTCCAGACATCATTGGAAAAGACATAGA < 41bp 0.770731966247951 0.534792390571209 0.053956687 0.08228308 prediction 0.471879151353483 Functional Loss - RPS3A ENSG00000145425 CDS Human protein_coding chr4:152025338 chr4:152025340 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_71420 0 0 1 0 2 RPS3A chr4:152025329 3'AG 152025329 Downstream 12bp
chr4 152025340 152025340 1 + G T UCEC 152025338 + 152025318 152025358 41 CTGGTTTGCAGGATTCCAGACAGCATTGGAAAAGACATAGA CTGGTTTGCAGGATTCCAGACATCATTGGAAAAGACATAGA < 41bp 0.770731966247951 0.534792390571209 0.053956687 0.08228308 prediction 0.471879151353483 Functional Loss - RPS3A ENSG00000145425 CDS Human protein_coding chr4:152025338 chr4:152025340 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_71420 0 0 1 0 2 RPS3A chr4:152025438 5'GT 152025438 Upstream 99bp
chrX 151820193 151820193 1 + G A LUAD 151820190 + 151820170 151820210 41 GCCTAGGCGACACAGGAGACCCCGAAGAGTCATTGCCCGCT GCCTAGGCGACACAGGAGACCCCAAAGAGTCATTGCCCGCT < 41bp 0.735938988396477 0.494760667524522 0.024990737 0.11556229 prediction 0.471877976792953 Functional Loss - GABRQ ENSG00000147402 CDS Human other chrX:151820190 chrX:151820193 nonsynonymous SNV 0.370 1 24 hm5C_associated_SNPs_71421 0 0 0 0 1 GABRQ chrX:151820245 5'GT 151820245 Upstream 53bp
chrX 151820192 151820192 1 + C T SKCM 151820190 + 151820170 151820210 41 GCCTAGGCGACACAGGAGACCCCGAAGAGTCATTGCCCGCT GCCTAGGCGACACAGGAGACCCTGAAGAGTCATTGCCCGCT < 41bp 0.735938988396477 0.46095936644269 0.024990737 0.053711027 prediction 0.471877976792953 Functional Loss - GABRQ ENSG00000147402 CDS Human other chrX:151820190 chrX:151820192 stopgain 0.285 0 23 hm5C_associated_SNPs_71422 0 0 0 0 1 GABRQ chrX:151820245 5'GT 151820245 Upstream 54bp
chr14 37132666 37132666 1 + G A STAD 37132663 + 37132643 37132683 41 CCCCGGTTCGGTGGCCATGCCGCGCACCTGGCCCTCCTCGC CCCCGGTTCGGTGGCCATGCCGCACACCTGGCCCTCCTCGC < 41bp 0.766889711047055 0.530951848703055 0.39407265 0.08316991 prediction 0.471875724688001 Functional Loss - PAX9 ENSG00000198807 CDS Human protein_coding chr14:37132663 chr14:37132666 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_71424 0 0 1 0 1 PAX9 chr14:37132728 5'GT 37132728 Upstream 63bp
chr8 54792067 54792067 1 + G A CESC 54792064 + 54792044 54792084 41 TCGGGGCGGCGCTGGCACTGCCCGGCCGACCCTCGGGGGGT TCGGGGCGGCGCTGGCACTGCCCAGCCGACCCTCGGGGGGT < 41bp 0.769363560428997 0.533426008793401 0.40407297 0.23624253 prediction 0.471875103271191 Functional Loss - RGS20 ENSG00000147509 CDS Human protein_coding chr8:54792064 chr8:54792067 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_71425 0 0 0 0 1 RGS20 chr8:54792162 5'GT 54792162 Upstream 96bp
chr22 38046671 38046671 1 - C A CESC 38046673 - 38046653 38046693 41 GCTGGAGCTGGAGCCGGAGCCGGAGCCGGGGTGGTGGCTGG GCTGGAGCTGGAGCCGGAGCCGTAGCCGGGGTGGTGGCTGG < 41bp 0.894991893182438 0.65905685663414 0.9388957 0.91535497 prediction 0.471870073096596 Functional Loss - SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38046673 chr22:38046671 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_71426 0 0 0 0 1 SH3BP1 chr22:38046719 3'AG 38046719 Downstream 49bp
chr8 95653617 95653617 1 + G C STAD 95653613 + 95653593 95653633 41 CTGGGGCCACCGGGGCCAAGCTAGGCTCGGATGAGAAGGAG CTGGGGCCACCGGGGCCAAGCTAGCCTCGGATGAGAAGGAG < 41bp 0.834409670361536 0.598480034396853 0.86418676 0.3973639 prediction 0.471859271929364 Functional Loss - ESRP1 ENSG00000104413 CDS Human protein_coding chr8:95653613 chr8:95653617 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_71427 0 0 1 0 1 ESRP1 chr8:95653678 5'GT 95653678 Upstream 62bp
chr12 110781105 110781105 1 + T C LUSC 110781104 + 110781084 110781124 41 TTCAGCTGCTCTGGGTCAATCTGGTGACAGATGGCCTGCCT TTCAGCTGCTCTGGGTCAATCCGGTGACAGATGGCCTGCCT < 41bp 0.771312121003527 0.535402843977545 0.6467808 0.87960804 prediction 0.471818554051964 Functional Loss - ATP2A2 ENSG00000174437 CDS Human protein_coding chr12:110781104 chr12:110781105 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_71433 0 0 1 0 1 ATP2A2 chr12:110781037 3'AG 110781037 Downstream 69bp
chr20 330326 330326 1 + C T GBM 330324 + 330304 330344 41 ATCGTTCCTGCAGCTGCAGCCGCGGCCCCAGCGTGGAGGAT ATCGTTCCTGCAGCTGCAGCCGTGGCCCCAGCGTGGAGGAT < 41bp 0.768715360808922 0.532809001854496 0.866611 0.69287175 prediction 0.471812717908853 Functional Loss - NRSN2 ENSG00000125841 CDS Human protein_coding chr20:330324 chr20:330326 synonymous SNV . 0 23 hm5C_associated_SNPs_71436 0 0 1 0 1 NRSN2 chr20:330282 3'AG 330282 Downstream 45bp
chr16 56901089 56901089 1 + C T UCEC 56901087 + 56901067 56901107 41 GCACCAGCAGCGAGAAGAACCCCGAGGAGCCAGTGCGCTTC GCACCAGCAGCGAGAAGAACCCTGAGGAGCCAGTGCGCTTC < 41bp 0.81680329734336 0.580898202777269 0.2721498 0.24478528 prediction 0.471810189132181 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56901087 chr16:56901089 synonymous SNV . 0 23 hm5C_associated_SNPs_71437 0 0 0 0 1 SLC12A3 chr16:56901128 5'GT 56901128 Upstream 40bp
chr12 111082879 111082879 1 + A C COAD 111082878 + 111082858 111082898 41 CTTTTGGAAATTCCCAGGCCCAGGACATGCTGGACTGGGTG CTTTTGGAAATTCCCAGGCCCCGGACATGCTGGACTGGGTG < 41bp 0.762612280716709 0.526707875088081 0.35874206 0.14346501 prediction 0.471808811257256 Functional Loss - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111082878 chr12:111082879 nonsynonymous SNV 0.966 3 22 hm5C_associated_SNPs_71439 0 0 0 0 1 TCTN1 chr12:111082934 5'GT 111082934 Upstream 56bp
chr1 1421563 1421563 1 + G T STAD 1421561 + 1421541 1421581 41 AAGAAGAACCGGGGCCTGTACAGGCACATCCTGCTGTATGG AAGAAGAACCGGGGCCTGTACATGCACATCCTGCTGTATGG < 41bp 0.735889546183363 0.369394443788649 0.9005139 0.3782769 prediction 0.471779092366726 Functional Loss - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1421561 chr1:1421563 nonsynonymous SNV 0.003 5 23 hm5C_associated_SNPs_71445 0 0 1 0 2 ATAD3B chr1:1421490 3'AG 1421490 Downstream 74bp
chr1 1421563 1421563 1 + G T STAD 1421561 + 1421541 1421581 41 AAGAAGAACCGGGGCCTGTACAGGCACATCCTGCTGTATGG AAGAAGAACCGGGGCCTGTACATGCACATCCTGCTGTATGG < 41bp 0.735889546183363 0.369394443788649 0.9005139 0.3782769 prediction 0.471779092366726 Functional Loss - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1421561 chr1:1421563 nonsynonymous SNV 0.003 5 23 hm5C_associated_SNPs_71445 0 0 1 0 2 ATAD3B chr1:1421615 5'GT 1421615 Upstream 53bp
chr3 14965563 14965563 1 + G A UCEC 14965560 + 14965540 14965580 41 GCTGTCTTCACCCCGCTTCTCGGGCAGTGCCTTTTCATCCG GCTGTCTTCACCCCGCTTCTCGGACAGTGCCTTTTCATCCG < 41bp 0.77323458870985 0.537348290590327 0.92679393 0.89951074 prediction 0.471772596239047 Functional Loss - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14965560 chr3:14965563 nonsynonymous SNV 0.901 0 24 hm5C_associated_SNPs_71448 0 0 0 0 2 FGD5 chr3:14965515 3'AG 14965515 Downstream 49bp
chr3 14965563 14965563 1 + G A UCEC 14965560 + 14965540 14965580 41 GCTGTCTTCACCCCGCTTCTCGGGCAGTGCCTTTTCATCCG GCTGTCTTCACCCCGCTTCTCGGACAGTGCCTTTTCATCCG < 41bp 0.77323458870985 0.537348290590327 0.92679393 0.89951074 prediction 0.471772596239047 Functional Loss - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14965560 chr3:14965563 nonsynonymous SNV 0.901 0 24 hm5C_associated_SNPs_71448 0 0 0 0 2 FGD5 chr3:14965645 5'GT 14965645 Upstream 83bp
chr2 220045917 220045917 1 + C T UCEC 220045915 + 220045895 220045935 41 CCAATGCCCTGCATCACAAACACGACAAGAGGAGTAAGGGG CCAATGCCCTGCATCACAAACATGACAAGAGGAGTAAGGGG < 41bp 0.735879320818503 0.460232195836263 0.06361222 0.15764573 prediction 0.471758641637006 Functional Loss - RETREG2 ENSG00000144567 CDS Human protein_coding chr2:220045915 chr2:220045917 synonymous SNV . 0 23 hm5C_associated_SNPs_71452 0 0 0 0 1 RETREG2 chr2:220045927 5'GT 220045927 Upstream 11bp
chr22 24237108 24237108 1 + G A rs201099096 24237105 + 24237085 24237125 41 CTGCTGTGCGGCCTGCTGGCCGAGCGCCTGCGCATCAGCCC CTGCTGTGCGGCCTGCTGGCCGAACGCCTGCGCATCAGCCC < 41bp 0.735963621080973 0.500088613630372 0.5380639 0.1730155 prediction 0.471750014901202 Functional Loss - MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237105 chr22:24237108 nonsynonymous SNV 0.973 0 24 hm5C_associated_SNPs_71453 0 0 1 0 1 MIF chr22:24237131 5'GT 24237131 Upstream 24bp
chr16 30775599 30775599 1 + T C KIRP 30775598 + 30775578 30775618 41 GTGAGGAGGTGGAGCTGGAGCTGCAAGGCCGAATGGAGTTC GTGAGGAGGTGGAGCTGGAGCCGCAAGGCCGAATGGAGTTC < 41bp 0.782455228205937 0.546582766844104 0.38287827 0.42089164 prediction 0.471744922723668 Functional Loss - RNF40 ENSG00000103549 CDS Human protein_coding chr16:30775598 chr16:30775599 nonsynonymous SNV 0.964 4 22 hm5C_associated_SNPs_71454 0 0 1 0 1 RNF40 chr16:30775500 3'AG 30775500 Downstream 100bp
chr10 99216547 99216547 1 + C T COAD 99216545 + 99216525 99216565 41 CTCTTCTAGGCACTGGCTTACTCGGGTGCTCTTACCTTCTA CTCTTCTAGGCACTGGCTTACTTGGGTGCTCTTACCTTCTA < 41bp 0.814105010578539 0.578241509951845 0.18382293 0.20370269 prediction 0.471727001253388 Functional Loss - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99216545 chr10:99216547 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_71455 0 0 1 1 1 ZDHHC16 chr10:99216534 3'AG 99216534 Downstream 14bp
chr1 35250435 35250435 1 + G A KIRC 35250432 + 35250412 35250452 41 TCCACAGCGTTCGGGCGCATCTGGCTGTCCGTGGTGTTCGT TCCACAGCGTTCGGGCGCATCTGACTGTCCGTGGTGTTCGT < 41bp 0.737741929829186 0.501883692543365 0.68122625 0.28015757 prediction 0.471716474571642 Functional Loss - GJB3 ENSG00000188910 CDS Human antisense chr1:35250432 chr1:35250435 stopgain 0.982 1 24 hm5C_associated_SNPs_71456 0 0 0 0 1 GJB3 chr1:35250339 3'AG 35250339 Downstream 97bp
chr1 907741 907741 1 + C T LGG 907739 + 907719 907759 41 GTCACTGGCTGCTGTGCCTTCGCGCTGTCACCCACAGGGAG GTCACTGGCTGCTGTGCCTTCGTGCTGTCACCCACAGGGAG < 41bp 0.750313989484569 0.514462879033337 0.38228822 0.38316154 prediction 0.471702220902464 Functional Loss - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:907739 chr1:907741 synonymous SNV . 0 23 hm5C_associated_SNPs_71459 0 0 0 0 2 PLEKHN1 chr1:907668 3'AG 907668 Downstream 74bp
chr1 907741 907741 1 + C T LGG 907739 + 907719 907759 41 GTCACTGGCTGCTGTGCCTTCGCGCTGTCACCCACAGGGAG GTCACTGGCTGCTGTGCCTTCGTGCTGTCACCCACAGGGAG < 41bp 0.750313989484569 0.514462879033337 0.38228822 0.38316154 prediction 0.471702220902464 Functional Loss - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:907739 chr1:907741 synonymous SNV . 0 23 hm5C_associated_SNPs_71459 0 0 0 0 2 PLEKHN1 chr1:907804 5'GT 907804 Upstream 64bp
chr10 26505807 26505807 1 + C T LIHC 26505805 + 26505785 26505825 41 GCTCTGGGGATTCCGAGAATCCCGGCACAGGTAGGAAGGAG GCTCTGGGGATTCCGAGAATCCTGGCACAGGTAGGAAGGAG < 41bp 0.744060785094405 0.50821480622766 0.54499114 0.6727472 prediction 0.471691957733491 Functional Loss - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26505805 chr10:26505807 synonymous SNV . 0 23 hm5C_associated_SNPs_71462 0 0 0 0 1 GAD2 chr10:26505814 5'GT 26505814 Upstream 8bp
chr19 39589258 39589258 1 + C T LUSC 39589256 + 39589236 39589276 41 TCCGGCGGAAGCTCTACATACACCGAGTCACGCTTCGCAAG TCCGGCGGAAGCTCTACATACATCGAGTCACGCTTCGCAAG < 41bp 0.810941460497231 0.575098750202249 0.1260778 0.055893123 prediction 0.471685420589964 Functional Loss - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39589256 chr19:39589258 synonymous SNV . 0 23 hm5C_associated_SNPs_71464 0 0 0 0 1 ACP7 chr19:39589298 5'GT 39589298 Upstream 41bp
chr5 71627179 71627179 1 + G T COAD 71627177 + 71627157 71627197 41 CGAGTTGGATCTCGAGGAATCTGCAGTGGAGCTCATGAAAG CGAGTTGGATCTCGAGGAATCTTCAGTGGAGCTCATGAAAG < 41bp 0.764909595588596 0.529067002363999 0.8654863 0.89523494 prediction 0.471685186449193 Functional Loss - PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71627177 chr5:71627179 nonsynonymous SNV 0.408 4 23 hm5C_associated_SNPs_71465 0 0 1 0 2 PTCD2 chr5:71627085 3'AG 71627085 Downstream 95bp
chr5 71627179 71627179 1 + G T COAD 71627177 + 71627157 71627197 41 CGAGTTGGATCTCGAGGAATCTGCAGTGGAGCTCATGAAAG CGAGTTGGATCTCGAGGAATCTTCAGTGGAGCTCATGAAAG < 41bp 0.764909595588596 0.529067002363999 0.8654863 0.89523494 prediction 0.471685186449193 Functional Loss - PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71627177 chr5:71627179 nonsynonymous SNV 0.408 4 23 hm5C_associated_SNPs_71465 0 0 1 0 2 PTCD2 chr5:71627202 5'GT 71627202 Upstream 24bp
chr17 73663525 73663525 1 + G C LUAD 73663524 + 73663504 73663544 41 TCAGAGCCCGAGTCTGATGGCGAGGCTGGAATCGAGGCGGT TCAGAGCCCGAGTCTGATGGCCAGGCTGGAATCGAGGCGGT < 41bp 0.869135822426854 0.633295118145179 0.8332824 0.34569198 prediction 0.471681408563349 Functional Loss - SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73663524 chr17:73663525 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_71467 0 0 1 0 1 SAP30BP chr17:73663558 5'GT 73663558 Upstream 34bp
chr19 38795277 38795277 1 + G T SARC 38795275 + 38795255 38795295 41 TCCATCCAGCAAGGACACCACAGCTCTTCCGACTCCAGCAG TCCATCCAGCAAGGACACCACATCTCTTCCGACTCCAGCAG < 41bp 0.735839922698328 0.392226990255947 0.3252809 0.19360021 prediction 0.471679845396656 Functional Loss - C19orf33 ENSG00000167644;ENSG00000267748 CDS Human other chr19:38795275 chr19:38795277 nonsynonymous SNV 0.311 3 23 hm5C_associated_SNPs_71468 0 0 0 0 3 C19orf33 chr19:38795205 3'AG 38795205 Downstream 73bp
chr19 38795277 38795277 1 + G T SARC 38795275 + 38795255 38795295 41 TCCATCCAGCAAGGACACCACAGCTCTTCCGACTCCAGCAG TCCATCCAGCAAGGACACCACATCTCTTCCGACTCCAGCAG < 41bp 0.735839922698328 0.392226990255947 0.3252809 0.19360021 prediction 0.471679845396656 Functional Loss - C19orf33 ENSG00000167644;ENSG00000267748 CDS Human other chr19:38795275 chr19:38795277 nonsynonymous SNV 0.311 3 23 hm5C_associated_SNPs_71468 0 0 0 0 3 C19orf33 chr19:38795264 3'AG 38795264 Downstream 14bp
chr19 38795277 38795277 1 + G T SARC 38795275 + 38795255 38795295 41 TCCATCCAGCAAGGACACCACAGCTCTTCCGACTCCAGCAG TCCATCCAGCAAGGACACCACATCTCTTCCGACTCCAGCAG < 41bp 0.735839922698328 0.392226990255947 0.3252809 0.19360021 prediction 0.471679845396656 Functional Loss - C19orf33 ENSG00000167644;ENSG00000267748 CDS Human other chr19:38795275 chr19:38795277 nonsynonymous SNV 0.311 3 23 hm5C_associated_SNPs_71468 0 0 0 0 3 C19orf33 chr19:38795326 5'GT 38795326 Upstream 50bp
chr7 50455154 50455154 1 + G T LUAD 50455151 + 50455131 50455171 41 CTTGGAAAGCATGGGCCTTCCGGGCACACTGTACCCAGGTA CTTGGAAAGCATGGGCCTTCCGGTCACACTGTACCCAGGTA < 41bp 0.735838525381483 0.38368609927803 0.46898937 0.16077775 prediction 0.471677050762966 Functional Loss - IKZF1 ENSG00000185811 CDS Human protein_coding chr7:50455151 chr7:50455154 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_71469 0 0 1 0 1 IKZF1 chr7:50455168 5'GT 50455168 Upstream 15bp
chr19 39964917 39964917 1 + C T OV 39964915 + 39964895 39964935 41 TCCCTATGCTGCCCCCTCCCCACAAGGTTCCTACCAGCCCA TCCCTATGCTGCCCCCTCCCCATAAGGTTCCTACCAGCCCA < 41bp 0.824711355962871 0.588873760120234 0.0595015 0.063863605 prediction 0.471675191685273 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39964915 chr19:39964917 stopgain 0.989 1 23 hm5C_associated_SNPs_71471 0 0 1 0 1 SUPT5H chr19:39964874 3'AG 39964874 Downstream 44bp
chr1 230820946 230820946 1 + G T COAD 230820944 + 230820924 230820964 41 ATCGCCTGTGGAGACTCACTCTGCAGATTTTGGCACGATAC ATCGCCTGTGGAGACTCACTCTTCAGATTTTGGCACGATAC < 41bp 0.889913309146543 0.654079648917146 0.4704293 0.5299159 prediction 0.471667320458793 Functional Loss - COG2 ENSG00000135775 CDS Human protein_coding chr1:230820944 chr1:230820946 synonymous SNV . 0 23 hm5C_associated_SNPs_71473 0 0 1 0 1 COG2 chr1:230820982 5'GT 230820982 Upstream 37bp
chr17 46002882 46002882 1 + C T SKCM 46002880 + 46002860 46002900 41 GGTTCACACGGAGTGACGAGCTCCAACGGCATGCTCGCACC GGTTCACACGGAGTGACGAGCTTCAACGGCATGCTCGCACC < 41bp 0.840034347732331 0.604209205874868 0.90239227 0.117423296 prediction 0.471650283714926 Functional Loss - SP2 ENSG00000167182 CDS Human protein_coding chr17:46002880 chr17:46002882 synonymous SNV . 0 23 hm5C_associated_SNPs_71477 0 0 0 0 1 SP2 chr17:46002907 5'GT 46002907 Upstream 26bp
chr2 242813902 242813902 1 + G A COAD 242813899 + 242813879 242813919 41 CACTGTCCGGGGACCTGGGACTCGGCCCATGTGCACGTCCT CACTGTCCGGGGACCTGGGACTCAGCCCATGTGCACGTCCT < 41bp 0.735824706089657 0.493354484745356 0.8191947 0.7863189 prediction 0.471649412179313 Functional Loss - RTP5 ENSG00000188011 CDS Human protein_coding chr2:242813899 chr2:242813902 synonymous SNV . 0 24 hm5C_associated_SNPs_71479 0 0 0 0 1 RTP5 chr2:242813866 3'AG 242813866 Downstream 37bp
chr2 242813901 242813901 1 + C T UCEC 242813899 + 242813879 242813919 41 CACTGTCCGGGGACCTGGGACTCGGCCCATGTGCACGTCCT CACTGTCCGGGGACCTGGGACTTGGCCCATGTGCACGTCCT < 41bp 0.735824706089657 0.495526281288788 0.8191947 0.82124156 prediction 0.471649412179313 Functional Loss - RTP5 ENSG00000188011 CDS Human protein_coding chr2:242813899 chr2:242813901 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_71480 0 0 0 0 1 RTP5 chr2:242813866 3'AG 242813866 Downstream 36bp
chr3 113499957 113499957 1 + G T UCEC 113499955 + 113499935 113499975 41 GAGCTGGTGAGAGTGGGCCACAGCGAATTGGTTGGAGAGAT GAGCTGGTGAGAGTGGGCCACATCGAATTGGTTGGAGAGAT < 41bp 0.735823979118581 0.39158346871146 0.41703278 0.23836008 prediction 0.471647958237162 Functional Loss - ATP6V1A ENSG00000114573 CDS Human protein_coding chr3:113499955 chr3:113499957 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_71481 0 0 1 0 2 ATP6V1A chr3:113499897 3'AG 113499897 Downstream 61bp
chr3 113499957 113499957 1 + G T UCEC 113499955 + 113499935 113499975 41 GAGCTGGTGAGAGTGGGCCACAGCGAATTGGTTGGAGAGAT GAGCTGGTGAGAGTGGGCCACATCGAATTGGTTGGAGAGAT < 41bp 0.735823979118581 0.39158346871146 0.41703278 0.23836008 prediction 0.471647958237162 Functional Loss - ATP6V1A ENSG00000114573 CDS Human protein_coding chr3:113499955 chr3:113499957 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_71481 0 0 1 0 2 ATP6V1A chr3:113500025 5'GT 113500025 Upstream 69bp
chr17 7611332 7611332 1 + T C UCEC 7611331 + 7611311 7611351 41 AGATCGGGGACCGGCTAGACCTGCTCTGCCCCCGGGCCCGG AGATCGGGGACCGGCTAGACCCGCTCTGCCCCCGGGCCCGG < 41bp 0.779701330168021 0.543878904558477 0.19317111 0.12977287 prediction 0.471644851219088 Functional Loss - EFNB3 ENSG00000108947 CDS Human protein_coding chr17:7611331 chr17:7611332 nonsynonymous SNV 0.989 5 22 hm5C_associated_SNPs_71482 0 0 1 0 1 EFNB3 chr17:7611276 3'AG 7611276 Downstream 57bp
chr12 132636716 132636716 1 + C T UCEC 132636714 + 132636694 132636734 41 CATGCCTGAGGTCAGCATCGCGCCACTGCTGGAGCTCACGG CATGCCTGAGGTCAGCATCGCGTCACTGCTGGAGCTCACGG < 41bp 0.794129236555703 0.558308734084904 0.4284129 0.25612903 prediction 0.471641004941598 Functional Loss - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132636714 chr12:132636716 nonsynonymous SNV 0.024 0 23 hm5C_associated_SNPs_71484 0 0 0 0 2 NOC4L chr12:132636629 3'AG 132636629 Downstream 88bp
chr12 132636716 132636716 1 + C T UCEC 132636714 + 132636694 132636734 41 CATGCCTGAGGTCAGCATCGCGCCACTGCTGGAGCTCACGG CATGCCTGAGGTCAGCATCGCGTCACTGCTGGAGCTCACGG < 41bp 0.794129236555703 0.558308734084904 0.4284129 0.25612903 prediction 0.471641004941598 Functional Loss - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132636714 chr12:132636716 nonsynonymous SNV 0.024 0 23 hm5C_associated_SNPs_71484 0 0 0 0 2 NOC4L chr12:132636742 5'GT 132636742 Upstream 27bp
chr1 11907648 11907648 1 + C T rs5063 11907646 + 11907626 11907666 41 TCCATCAGGTCTGCGTTGGACACGGCATTGTACATGGGATT TCCATCAGGTCTGCGTTGGACATGGCATTGTACATGGGATT < 41bp 0.76028812551492 0.524467880836192 0.28855097 0.38784406 prediction 0.471640489357454 Functional Loss - NPPA ENSG00000175206 CDS Human protein_coding chr1:11907646 chr1:11907648 nonsynonymous SNV 0.015 0 23 hm5C_associated_SNPs_71485 0 0 0 0 1 NPPA chr1:11907634 3'AG 11907634 Downstream 15bp
chr12 117465851 117465851 1 + C T rs149415291 117465849 + 117465829 117465869 41 CTAGACACCGGGGGCTGATCCGCGCCTATGAGTTTGCGGTG CTAGACACCGGGGGCTGATCCGTGCCTATGAGTTTGCGGTG < 41bp 0.735813672156285 0.463310024639204 0.61196995 0.18047959 prediction 0.47162734431257 Functional Loss - FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117465849 chr12:117465851 synonymous SNV . 0 23 hm5C_associated_SNPs_71487 0 0 0 0 1 FBXW8 chr12:117465833 3'AG 117465833 Downstream 19bp
chr12 117465852 117465852 1 + G A UCEC 117465849 + 117465829 117465869 41 CTAGACACCGGGGGCTGATCCGCGCCTATGAGTTTGCGGTG CTAGACACCGGGGGCTGATCCGCACCTATGAGTTTGCGGTG < 41bp 0.735813672156285 0.485655588730475 0.61196995 0.16664302 prediction 0.47162734431257 Functional Loss - FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117465849 chr12:117465852 nonsynonymous SNV 0.680 2 24 hm5C_associated_SNPs_71488 0 0 0 0 1 FBXW8 chr12:117465833 3'AG 117465833 Downstream 20bp
chr11 65292703 65292703 1 + G A rs566948339 65292700 + 65292680 65292720 41 AGCCCCCAGAGGGCGGCCTGCCCGGGCCCTGGGCCCTGCAC AGCCCCCAGAGGGCGGCCTGCCCAGGCCCTGGGCCCTGCAC < 41bp 0.755339850809649 0.519526460877209 0.7675041 0.3186767 prediction 0.47162677986488 Functional Loss - SCYL1 ENSG00000142186 CDS Human protein_coding chr11:65292700 chr11:65292703 nonsynonymous SNV 0.596 1 24 hm5C_associated_SNPs_71489 0 0 1 0 1 SCYL1 chr11:65292735 5'GT 65292735 Upstream 33bp
chr2 69207897 69207897 1 + C T COAD 69207895 + 69207875 69207915 41 TTTTACTCAGGAACGTGCTACACGACCAGTGTACTATGGAT TTTTACTCAGGAACGTGCTACATGACCAGTGTACTATGGAT < 41bp 0.735813173316206 0.471123589068729 0.026080191 0.02267015 prediction 0.471626346632412 Functional Loss - GKN1 ENSG00000169605 CDS Human protein_coding chr2:69207895 chr2:69207897 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_71490 0 0 0 0 1 GKN1 chr2:69207861 3'AG 69207861 Downstream 37bp
chr8 69129902 69129902 1 + C T COAD 69129900 + 69129880 69129920 41 CCATCATTCTGGCCAGAAGCCACGGACTGCCACCTCGTTAC CCATCATTCTGGCCAGAAGCCATGGACTGCCACCTCGTTAC < 41bp 0.735805825552453 0.459991126561224 0.28012842 0.19586322 prediction 0.471611651104906 Functional Loss - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69129900 chr8:69129902 synonymous SNV . 0 23 hm5C_associated_SNPs_71492 0 0 0 0 2 PREX2 chr8:69129851 3'AG 69129851 Downstream 52bp
chr8 69129902 69129902 1 + C T COAD 69129900 + 69129880 69129920 41 CCATCATTCTGGCCAGAAGCCACGGACTGCCACCTCGTTAC CCATCATTCTGGCCAGAAGCCATGGACTGCCACCTCGTTAC < 41bp 0.735805825552453 0.459991126561224 0.28012842 0.19586322 prediction 0.471611651104906 Functional Loss - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69129900 chr8:69129902 synonymous SNV . 0 23 hm5C_associated_SNPs_71492 0 0 0 0 2 PREX2 chr8:69129953 5'GT 69129953 Upstream 52bp
chr8 69129903 69129903 1 + G T UCEC 69129900 + 69129880 69129920 41 CCATCATTCTGGCCAGAAGCCACGGACTGCCACCTCGTTAC CCATCATTCTGGCCAGAAGCCACTGACTGCCACCTCGTTAC < 41bp 0.735805825552453 0.354672664573825 0.28012842 0.056275696 prediction 0.471611651104906 Functional Loss - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69129900 chr8:69129903 stopgain 0.745 1 24 hm5C_associated_SNPs_71493 0 0 0 0 2 PREX2 chr8:69129851 3'AG 69129851 Downstream 53bp
chr8 69129903 69129903 1 + G T UCEC 69129900 + 69129880 69129920 41 CCATCATTCTGGCCAGAAGCCACGGACTGCCACCTCGTTAC CCATCATTCTGGCCAGAAGCCACTGACTGCCACCTCGTTAC < 41bp 0.735805825552453 0.354672664573825 0.28012842 0.056275696 prediction 0.471611651104906 Functional Loss - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69129900 chr8:69129903 stopgain 0.745 1 24 hm5C_associated_SNPs_71493 0 0 0 0 2 PREX2 chr8:69129953 5'GT 69129953 Upstream 51bp
chr22 18022674 18022674 1 + G A COAD 18022671 + 18022651 18022691 41 CACCGGAGAACAGTGAAGCACAAGAGCCTGAGAATGACCAA CACCGGAGAACAGTGAAGCACAAAAGCCTGAGAATGACCAA < 41bp 0.753545023971404 0.517751761055831 0.5373265 0.33429033 prediction 0.471586525831147 Functional Loss - CECR2 ENSG00000099954 CDS Human protein_coding chr22:18022671 chr22:18022674 nonsynonymous SNV 0.419 2 24 hm5C_associated_SNPs_71500 0 0 0 0 1 CECR2 chr22:18022692 5'GT 18022692 Upstream 19bp
chr1 116935580 116935580 1 + G A UCEC 116935577 + 116935557 116935597 41 GAAAGATACGCCAAAATCGTCGAGATACCCTTCAACTCCAC GAAAGATACGCCAAAATCGTCGAAATACCCTTCAACTCCAC < 41bp 0.742773209880126 0.506981538196073 0.101915 0.09077579 prediction 0.471583343368104 Functional Loss - ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116935577 chr1:116935580 synonymous SNV . 0 24 hm5C_associated_SNPs_71504 0 0 1 0 1 ATP1A1 chr1:116935610 5'GT 116935610 Upstream 31bp
chr8 125487509 125487509 1 + C T KIRP 125487507 + 125487487 125487527 41 AAAGCCGGTTCTGCATCGTGCTCCAGATCTTCCTCCGGCTC AAAGCCGGTTCTGCATCGTGCTTCAGATCTTCCTCCGGCTC < 41bp 0.799487969731831 0.563701900675282 0.24716076 0.10322592 prediction 0.471572138113099 Functional Loss - RNF139 ENSG00000170881 CDS Human protein_coding chr8:125487507 chr8:125487509 synonymous SNV . 0 23 hm5C_associated_SNPs_71505 0 0 1 0 1 RNF139 chr8:125487531 5'GT 125487531 Upstream 23bp
chr15 76017486 76017486 1 + G A rs142660193 76017483 + 76017463 76017503 41 AAGTACCTCCGGCCATCCTGCACGGGCTACATAGATCATGA AAGTACCTCCGGCCATCCTGCACAGGCTACATAGATCATGA < 41bp 0.758215657665421 0.522432049708819 0.32400966 0.19005325 prediction 0.471567215913205 Functional Loss - ODF3L1 ENSG00000182950 CDS Human protein_coding chr15:76017483 chr15:76017486 synonymous SNV . 0 24 hm5C_associated_SNPs_71507 0 0 0 0 1 ODF3L1 chr15:76017449 3'AG 76017449 Downstream 38bp
chr22 38212302 38212302 1 + G A rs113961840 38212299 + 38212279 38212319 41 GGGTGATGCCCGGCTGGCCTCTCGCATGGCGGATGACATGC GGGTGATGCCCGGCTGGCCTCTCACATGGCGGATGACATGC < 41bp 0.735780765550309 0.49073846236642 0.301461 0.091531634 prediction 0.471561531100618 Functional Loss - GCAT ENSG00000100116 CDS Human protein_coding chr22:38212299 chr22:38212302 nonsynonymous SNV 0.809 1 24 hm5C_associated_SNPs_71510 0 0 0 0 2 GCAT chr22:38212207 3'AG 38212207 Downstream 96bp
chr22 38212302 38212302 1 + G A rs113961840 38212299 + 38212279 38212319 41 GGGTGATGCCCGGCTGGCCTCTCGCATGGCGGATGACATGC GGGTGATGCCCGGCTGGCCTCTCACATGGCGGATGACATGC < 41bp 0.735780765550309 0.49073846236642 0.301461 0.091531634 prediction 0.471561531100618 Functional Loss - GCAT ENSG00000100116 CDS Human protein_coding chr22:38212299 chr22:38212302 nonsynonymous SNV 0.809 1 24 hm5C_associated_SNPs_71510 0 0 0 0 2 GCAT chr22:38212328 5'GT 38212328 Upstream 27bp
chr1 18703308 18703308 1 + G A BLCA 18703305 + 18703285 18703325 41 GGCCAACAGAACGAAGTCTTCCCGGAGCCCATGTTCACGTG GGCCAACAGAACGAAGTCTTCCCAGAGCCCATGTTCACGTG < 41bp 0.735780270013893 0.496849658096716 0.12653759 0.030347615 prediction 0.471560540027786 Functional Loss - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18703305 chr1:18703308 synonymous SNV . 0 24 hm5C_associated_SNPs_71511 0 0 0 0 1 IGSF21 chr1:18703294 3'AG 18703294 Downstream 15bp
chr1 164768988 164768988 1 + G T LUAD 164768986 + 164768966 164769006 41 AATCTCCTGCGAGAGCAAAGCCGGACCAGGCCCATCTCCCC AATCTCCTGCGAGAGCAAAGCCTGACCAGGCCCATCTCCCC < 41bp 0.735779793073269 0.384604860530619 0.7060076 0.05364713 prediction 0.471559586146538 Functional Loss - PBX1 ENSG00000185630 CDS Human protein_coding chr1:164768986 chr1:164768988 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_71512 0 0 0 0 1 PBX1 chr1:164768936 3'AG 164768936 Downstream 53bp
chr18 6851069 6851069 1 + G A rs147354786 6851066 + 6851046 6851086 41 GTGGCAACCACACTAATCAGCTGGATGGCACCAAGGAAGAA GTGGCAACCACACTAATCAGCTGAATGGCACCAAGGAAGAA < 41bp 0.737592873835837 0.501820474428854 0.1783981 0.14488697 prediction 0.471544798813965 Functional Loss - ARHGAP28 ENSG00000088756 CDS Human protein_coding chr18:6851066 chr18:6851069 nonsynonymous SNV 0.954 0 24 hm5C_associated_SNPs_71513 0 0 0 0 2 ARHGAP28 chr18:6851033 3'AG 6851033 Downstream 37bp
chr18 6851069 6851069 1 + G A rs147354786 6851066 + 6851046 6851086 41 GTGGCAACCACACTAATCAGCTGGATGGCACCAAGGAAGAA GTGGCAACCACACTAATCAGCTGAATGGCACCAAGGAAGAA < 41bp 0.737592873835837 0.501820474428854 0.1783981 0.14488697 prediction 0.471544798813965 Functional Loss - ARHGAP28 ENSG00000088756 CDS Human protein_coding chr18:6851066 chr18:6851069 nonsynonymous SNV 0.954 0 24 hm5C_associated_SNPs_71513 0 0 0 0 2 ARHGAP28 chr18:6851125 5'GT 6851125 Upstream 57bp
chr10 102241682 102241682 1 + G A UCEC 102241679 + 102241659 102241699 41 ACTTTTCCAGGGGGACAAGGCTGGCTGTGGGGAGGCTGCAG ACTTTTCCAGGGGGACAAGGCTGACTGTGGGGAGGCTGCAG < 41bp 0.750815882456409 0.515045537717809 0.75360876 0.48438078 prediction 0.471540689477201 Functional Loss - WNT8B ENSG00000075290 CDS Human protein_coding chr10:102241679 chr10:102241682 stopgain 1.000 1 24 hm5C_associated_SNPs_71514 0 0 0 0 1 WNT8B chr10:102241669 3'AG 102241669 Downstream 14bp
chr11 132016309 132016309 1 + G C LUSC 132016308 + 132016288 132016328 41 ACCCAAACGCAGTACAGCATCGAGATCCAGAACGTGGATGT ACCCAAACGCAGTACAGCATCCAGATCCAGAACGTGGATGT < 41bp 0.767282515752615 0.531518417489049 0.24756733 0.21542376 prediction 0.471528196527132 Functional Loss - NTM ENSG00000182667 CDS Human protein_coding chr11:132016308 chr11:132016309 nonsynonymous SNV 0.967 1 22 hm5C_associated_SNPs_71518 0 0 0 0 1 NTM chr11:132016408 5'GT 132016408 Upstream 100bp
chr22 39448671 39448671 1 + G A SKCM 39448668 + 39448648 39448688 41 TAAAATACAACTTTCTATTCCTGGACAGCAAGCTGCAGGAG TAAAATACAACTTTCTATTCCTGAACAGCAAGCTGCAGGAG < 41bp 0.752438165485735 0.516674638467891 0.021111757 0.025300592 prediction 0.47152705403569 Functional Loss - APOBEC3F ENSG00000128394 CDS Human protein_coding chr22:39448668 chr22:39448671 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_71519 0 0 1 0 1 APOBEC3F chr22:39448582 3'AG 39448582 Downstream 90bp
chr7 98992103 98992103 1 + G T UCEC 98992100 + 98992080 98992120 41 GAGTCAGCCTTGAAGGACCTCAAGATCAAATGACCTGTGAG GAGTCAGCCTTGAAGGACCTCAATATCAAATGACCTGTGAG < 41bp 0.735757224037665 0.344305036604572 0.2845705 0.19006273 prediction 0.47151444807533 Functional Loss - ARPC1B ENSG00000130429 CDS Human protein_coding chr7:98992100 chr7:98992103 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_71520 0 0 1 0 1 ARPC1B chr7:98992074 3'AG 98992074 Downstream 30bp
chr21 48055602 48055602 1 + G T rs2277829 48055599 + 48055579 48055619 41 GCGGGTTGAGGGCGGTGGCTCAGGCTCCTGGAAAGGACCGT GCGGGTTGAGGGCGGTGGCTCAGTCTCCTGGAAAGGACCGT < 41bp 0.735753268544789 0.387282435068025 0.89175916 0.48476622 prediction 0.471506537089578 Functional Loss - PRMT2 ENSG00000160310 UTR5 Human protein_coding chr21:48055599 chr21:48055602 . . 0 24 hm5C_associated_SNPs_71521 0 0 1 0 1 PRMT2 chr21:48055675 5'GT 48055675 Upstream 74bp
chr19 50195642 50195642 1 + C T LUSC 50195640 + 50195620 50195660 41 CTCCTGGAAAAGGCATCTCTCACGTTTCTGGGTGAGGAGCG CTCCTGGAAAAGGCATCTCTCATGTTTCTGGGTGAGGAGCG < 41bp 0.735752506907503 0.481356290732323 0.43797392 0.5260219 prediction 0.471505013815007 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50195640 chr19:50195642 nonsynonymous SNV 0.007 3 23 hm5C_associated_SNPs_71522 0 0 0 0 1 CPT1C chr19:50195650 5'GT 50195650 Upstream 9bp
chr17 43912051 43912051 1 + G T LUSC 43912048 + 43912028 43912068 41 GGACAAGCACTCGATCCGTGCCCGAGTGGCCCGTGCCATGT GGACAAGCACTCGATCCGTGCCCTAGTGGCCCGTGCCATGT < 41bp 0.735745629015211 0.416308339628973 0.10095772 0.009219378 prediction 0.471491258030422 Functional Loss - CRHR1;LINC02210-CRHR1 ENSG00000120088 CDS Human protein_coding chr17:43912048 chr17:43912051 stopgain 0.292 4 24 hm5C_associated_SNPs_71524 0 0 1 0 1 CRHR1;LINC02210-CRHR1 chr17:43911990 3'AG 43911990 Downstream 62bp
chr19 54625967 54625967 1 + G A UCEC 54625964 + 54625944 54625984 41 AATGCACTGGATTACATCCGCACGGTCAAGGTGAGCGCAGA AATGCACTGGATTACATCCGCACAGTCAAGGTGAGCGCAGA < 41bp 0.750531347692926 0.514790417626935 0.3828085 0.089107156 prediction 0.471481860131981 Functional Loss - PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54625964 chr19:54625967 synonymous SNV . 0 24 hm5C_associated_SNPs_71529 0 0 1 0 2 PRPF31 chr19:54625876 3'AG 54625876 Downstream 92bp
chr19 54625967 54625967 1 + G A UCEC 54625964 + 54625944 54625984 41 AATGCACTGGATTACATCCGCACGGTCAAGGTGAGCGCAGA AATGCACTGGATTACATCCGCACAGTCAAGGTGAGCGCAGA < 41bp 0.750531347692926 0.514790417626935 0.3828085 0.089107156 prediction 0.471481860131981 Functional Loss - PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54625964 chr19:54625967 synonymous SNV . 0 24 hm5C_associated_SNPs_71529 0 0 1 0 2 PRPF31 chr19:54625973 5'GT 54625973 Upstream 7bp
chr16 1391843 1391843 1 + C T UCEC 1391841 + 1391821 1391861 41 AGCGAGATTGAGGATGTGAGCACGGACCAGCTGCACCTGGA AGCGAGATTGAGGATGTGAGCATGGACCAGCTGCACCTGGA < 41bp 0.735739397472053 0.489470418486523 0.8098273 0.857618 prediction 0.471478794944107 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1391841 chr16:1391843 nonsynonymous SNV 0.044 0 23 hm5C_associated_SNPs_71531 0 0 0 0 2 BAIAP3 chr16:1391823 3'AG 1391823 Downstream 21bp
chr16 1391843 1391843 1 + C T UCEC 1391841 + 1391821 1391861 41 AGCGAGATTGAGGATGTGAGCACGGACCAGCTGCACCTGGA AGCGAGATTGAGGATGTGAGCATGGACCAGCTGCACCTGGA < 41bp 0.735739397472053 0.489470418486523 0.8098273 0.857618 prediction 0.471478794944107 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1391841 chr16:1391843 nonsynonymous SNV 0.044 0 23 hm5C_associated_SNPs_71531 0 0 0 0 2 BAIAP3 chr16:1391867 5'GT 1391867 Upstream 25bp
chr20 2384435 2384435 1 + C T ESCA 2384433 + 2384413 2384453 41 AGGCGGTGGGCAGTGACTCCCGCGTGGACATCACTGACCTC AGGCGGTGGGCAGTGACTCCCGTGTGGACATCACTGACCTC < 41bp 0.806743854685231 0.571011091397543 0.62369925 0.428444 prediction 0.471465526575376 Functional Loss - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2384433 chr20:2384435 synonymous SNV . 0 23 hm5C_associated_SNPs_71534 0 0 0 0 1 TGM6 chr20:2384469 5'GT 2384469 Upstream 35bp
chr6 43231030 43231030 1 + T C COAD 43231029 + 43231009 43231049 41 GCAGCCCTTCCCACTCACCCCTGCACTCGGGACCCCGCCCT GCAGCCCTTCCCACTCACCCCCGCACTCGGGACCCCGCCCT < 41bp 0.779192485607111 0.543461591808077 0.23129955 0.064600796 prediction 0.471461787598068 Functional Loss - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43231029 chr6:43231030 nonsynonymous SNV 0.989 3 22 hm5C_associated_SNPs_71535 0 0 0 0 1 TTBK1 chr6:43231088 5'GT 43231088 Upstream 59bp
chr16 31050934 31050934 1 + G A STAD 31050931 + 31050911 31050951 41 ACGTGGAACGTGGGCAGGAGCACGTCAAGACGGCCCTGGAG ACGTGGAACGTGGGCAGGAGCACATCAAGACGGCCCTGGAG < 41bp 0.765757937632418 0.530030322034972 0.35155112 0.24926817 prediction 0.47145523119489 Functional Loss - STX4 ENSG00000103496 CDS Human protein_coding chr16:31050931 chr16:31050934 nonsynonymous SNV 0.905 0 24 hm5C_associated_SNPs_71537 0 0 1 0 2 STX4 chr16:31050862 3'AG 31050862 Downstream 73bp
chr16 31050934 31050934 1 + G A STAD 31050931 + 31050911 31050951 41 ACGTGGAACGTGGGCAGGAGCACGTCAAGACGGCCCTGGAG ACGTGGAACGTGGGCAGGAGCACATCAAGACGGCCCTGGAG < 41bp 0.765757937632418 0.530030322034972 0.35155112 0.24926817 prediction 0.47145523119489 Functional Loss - STX4 ENSG00000103496 CDS Human protein_coding chr16:31050931 chr16:31050934 nonsynonymous SNV 0.905 0 24 hm5C_associated_SNPs_71537 0 0 1 0 2 STX4 chr16:31050972 5'GT 31050972 Upstream 39bp
chr7 107336428 107336428 1 + C T rs77407094 107336426 + 107336406 107336446 41 CCATCATTCTGGGGCTGGATCTCGGTTTACTAGCTGGCCTT CCATCATTCTGGGGCTGGATCTTGGTTTACTAGCTGGCCTT < 41bp 0.841785688968481 0.606067638166175 0.30031875 0.11439994 prediction 0.471436101604611 Functional Loss - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107336426 chr7:107336428 synonymous SNV . 0 23 hm5C_associated_SNPs_71541 2 0 0 0 2 SLC26A4 chr7:107336378 3'AG 107336378 Downstream 51bp
chr7 107336428 107336428 1 + C T rs77407094 107336426 + 107336406 107336446 41 CCATCATTCTGGGGCTGGATCTCGGTTTACTAGCTGGCCTT CCATCATTCTGGGGCTGGATCTTGGTTTACTAGCTGGCCTT < 41bp 0.841785688968481 0.606067638166175 0.30031875 0.11439994 prediction 0.471436101604611 Functional Loss - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107336426 chr7:107336428 synonymous SNV . 0 23 hm5C_associated_SNPs_71541 2 0 0 0 2 SLC26A4 chr7:107336484 5'GT 107336484 Upstream 57bp
chrX 149814260 149814260 1 + C T SKCM 149814258 + 149814238 149814278 41 ATAAAGATGATGAGAAATATCTCGATGTTATCAGGGAGACT ATAAAGATGATGAGAAATATCTTGATGTTATCAGGGAGACT < 41bp 0.84819275724331 0.612476098075784 0.66884303 0.057968974 prediction 0.471433318335052 Functional Loss - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149814258 chrX:149814260 synonymous SNV . 0 23 hm5C_associated_SNPs_71542 0 0 0 0 1 MTM1 chrX:149814344 5'GT 149814344 Upstream 85bp
chr20 34145234 34145234 1 + C T UCEC 34145232 + 34145212 34145252 41 TTCGCTCATCTACCACTCAGCACGAGCCATCCAGAAGAAAA TTCGCTCATCTACCACTCAGCATGAGCCATCCAGAAGAAAA < 41bp 0.735715406662216 0.487535055603171 0.020104527 0.01420331 prediction 0.471430813324432 Functional Loss - ERGIC3 ENSG00000125991 CDS Human protein_coding chr20:34145232 chr20:34145234 stopgain 0.988 1 23 hm5C_associated_SNPs_71544 0 0 1 0 1 ERGIC3 chr20:34145196 3'AG 34145196 Downstream 39bp
chr3 111795927 111795927 1 + T C LAML 111795926 + 111795906 111795946 41 GCCAATATGCATTCCTCCCACTGGTCAGAGAGTTCGCAGTG GCCAATATGCATTCCTCCCACCGGTCAGAGAGTTCGCAGTG < 41bp 0.744320624084937 0.508605815958893 0.086869925 0.14259005 prediction 0.471429616252088 Functional Loss - TMPRSS7 ENSG00000176040 CDS Human protein_coding chr3:111795926 chr3:111795927 synonymous SNV . 0 22 hm5C_associated_SNPs_71545 0 0 0 0 1 TMPRSS7 chr3:111795991 5'GT 111795991 Upstream 65bp
chr12 97334248 97334248 1 + G T LUAD 97334246 + 97334226 97334266 41 AAACAGACAGTGGAAAAAATCAGGATTTCTCCAGCTTTGAT AAACAGACAGTGGAAAAAATCATGATTTCTCCAGCTTTGAT < 41bp 0.881876281830258 0.646163211731225 0.92183924 0.040920466 prediction 0.471426140198065 Functional Loss - NEDD1 ENSG00000139350 CDS Human protein_coding chr12:97334246 chr12:97334248 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_71546 0 0 1 0 2 NEDD1 chr12:97334187 3'AG 97334187 Downstream 62bp
chr12 97334248 97334248 1 + G T LUAD 97334246 + 97334226 97334266 41 AAACAGACAGTGGAAAAAATCAGGATTTCTCCAGCTTTGAT AAACAGACAGTGGAAAAAATCATGATTTCTCCAGCTTTGAT < 41bp 0.881876281830258 0.646163211731225 0.92183924 0.040920466 prediction 0.471426140198065 Functional Loss - NEDD1 ENSG00000139350 CDS Human protein_coding chr12:97334246 chr12:97334248 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_71546 0 0 1 0 2 NEDD1 chr12:97334315 5'GT 97334315 Upstream 68bp
chr1 22927832 22927832 1 + C T BLCA 22927830 + 22927810 22927850 41 TCGTCCGGAGCTGCTTTGACCTCCGAGGGGGCAGCGGTGGC TCGTCCGGAGCTGCTTTGACCTTCGAGGGGGCAGCGGTGGC < 41bp 0.735710012864919 0.463089258628438 0.4675938 0.28800392 prediction 0.471420025729839 Functional Loss - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22927830 chr1:22927832 synonymous SNV . 0 23 hm5C_associated_SNPs_71547 0 0 0 0 1 EPHA8 chr1:22927793 3'AG 22927793 Downstream 40bp
chr12 132630208 132630208 1 + A C LUAD 132630207 + 132630187 132630227 41 GGCCACCCCTCCTTTCAGGTCAAGGTGGGTCATTGGGCTGG GGCCACCCCTCCTTTCAGGTCCAGGTGGGTCATTGGGCTGG < 41bp 0.79985161338007 0.564144900312162 0.8388768 0.52386224 prediction 0.471413426135816 Functional Loss - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132630207 chr12:132630208 nonsynonymous SNV 0.991 1 22 hm5C_associated_SNPs_71548 0 0 1 0 1 NOC4L chr12:132630210 5'GT 132630210 Upstream 3bp
chr9 131038608 131038608 1 + C T STAD 131038606 + 131038586 131038626 41 GGTGCACCTGAGAGGTCGCTCTCCGACTCCCGCGCTGGACC GGTGCACCTGAGAGGTCGCTCTTCGACTCCCGCGCTGGACC < 41bp 0.762749981004334 0.527046919963704 0.47471255 0.35596192 prediction 0.471406122081259 Functional Loss - SWI5 ENSG00000175854 CDS Human protein_coding chr9:131038606 chr9:131038608 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_71551 0 0 1 0 1 SWI5 chr9:131038681 5'GT 131038681 Upstream 74bp
chr17 54520268 54520268 1 + C T PAAD 54520266 + 54520246 54520286 41 GGATGGGGACCTGCTCAGACCACGACACCGGCATGTGCCTC GGATGGGGACCTGCTCAGACCATGACACCGGCATGTGCCTC < 41bp 0.834911772772157 0.59921732201148 0.04994291 0.07148144 prediction 0.471388901521353 Functional Loss - ANKFN1 ENSG00000153930 CDS Human protein_coding chr17:54520266 chr17:54520268 nonsynonymous SNV 0.210 3 23 hm5C_associated_SNPs_71554 0 0 0 0 2 ANKFN1 chr17:54520204 3'AG 54520204 Downstream 65bp
chr17 54520268 54520268 1 + C T PAAD 54520266 + 54520246 54520286 41 GGATGGGGACCTGCTCAGACCACGACACCGGCATGTGCCTC GGATGGGGACCTGCTCAGACCATGACACCGGCATGTGCCTC < 41bp 0.834911772772157 0.59921732201148 0.04994291 0.07148144 prediction 0.471388901521353 Functional Loss - ANKFN1 ENSG00000153930 CDS Human protein_coding chr17:54520266 chr17:54520268 nonsynonymous SNV 0.210 3 23 hm5C_associated_SNPs_71554 0 0 0 0 2 ANKFN1 chr17:54520294 5'GT 54520294 Upstream 27bp
chr5 424083 424083 1 + G A UCEC 424080 + 424060 424100 41 CGCTGCCTGCTGGACAGCACCTCGGGCTTCCTGGTGAGTGC CGCTGCCTGCTGGACAGCACCTCAGGCTTCCTGGTGAGTGC < 41bp 0.764516041033962 0.528825469736743 0.574847 0.46445468 prediction 0.471381142594437 Functional Loss - AHRR ENSG00000063438 CDS Human protein_coding chr5:424080 chr5:424083 synonymous SNV . 0 24 hm5C_associated_SNPs_71556 0 0 0 0 1 AHRR chr5:424092 5'GT 424092 Upstream 10bp
chr19 48830831 48830831 1 + G A COAD 48830828 + 48830808 48830848 41 CTGAATCTCTGGTACGACTGCACGTGGAACAACGACACCAA CTGAATCTCTGGTACGACTGCACATGGAACAACGACACCAA < 41bp 0.74607430936076 0.510385326891824 0.25165883 0.12674299 prediction 0.471377964937872 Functional Loss - EMP3 ENSG00000142227 CDS Human protein_coding chr19:48830828 chr19:48830831 synonymous SNV . 0 24 hm5C_associated_SNPs_71558 0 0 1 0 2 EMP3 chr19:48830778 3'AG 48830778 Downstream 54bp
chr19 48830831 48830831 1 + G A COAD 48830828 + 48830808 48830848 41 CTGAATCTCTGGTACGACTGCACGTGGAACAACGACACCAA CTGAATCTCTGGTACGACTGCACATGGAACAACGACACCAA < 41bp 0.74607430936076 0.510385326891824 0.25165883 0.12674299 prediction 0.471377964937872 Functional Loss - EMP3 ENSG00000142227 CDS Human protein_coding chr19:48830828 chr19:48830831 synonymous SNV . 0 24 hm5C_associated_SNPs_71558 0 0 1 0 2 EMP3 chr19:48830880 5'GT 48830880 Upstream 50bp
chr18 43212385 43212385 1 + G T LUSC 43212383 + 43212363 43212403 41 ACTGCTGATGGCCGTGTTCTCGGAGAAGTTAGACTACTACT ACTGCTGATGGCCGTGTTCTCGTAGAAGTTAGACTACTACT < 41bp 0.735684202437148 0.390639550253782 0.9226311 0.80351084 prediction 0.471368404874297 Functional Loss - SLC14A2 ENSG00000132874 CDS Human protein_coding chr18:43212383 chr18:43212385 stopgain 0.756 0 23 hm5C_associated_SNPs_71559 0 0 0 0 2 SLC14A2 chr18:43212315 3'AG 43212315 Downstream 71bp
chr18 43212385 43212385 1 + G T LUSC 43212383 + 43212363 43212403 41 ACTGCTGATGGCCGTGTTCTCGGAGAAGTTAGACTACTACT ACTGCTGATGGCCGTGTTCTCGTAGAAGTTAGACTACTACT < 41bp 0.735684202437148 0.390639550253782 0.9226311 0.80351084 prediction 0.471368404874297 Functional Loss - SLC14A2 ENSG00000132874 CDS Human protein_coding chr18:43212383 chr18:43212385 stopgain 0.756 0 23 hm5C_associated_SNPs_71559 0 0 0 0 2 SLC14A2 chr18:43212443 5'GT 43212443 Upstream 59bp
chr16 84911049 84911049 1 + G A READ 84911046 + 84911026 84911066 41 CCTTGCTCCTGTTCACAGTGCAGGATTTGGACTGCTACACG CCTTGCTCCTGTTCACAGTGCAGAATTTGGACTGCTACACG < 41bp 0.759891083066226 0.524210129513725 0.8231964 0.4317314 prediction 0.471361907105003 Functional Loss - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84911046 chr16:84911049 nonsynonymous SNV 0.539 2 24 hm5C_associated_SNPs_71564 0 0 0 0 2 CRISPLD2 chr16:84911044 3'AG 84911044 Downstream 6bp
chr16 84911049 84911049 1 + G A READ 84911046 + 84911026 84911066 41 CCTTGCTCCTGTTCACAGTGCAGGATTTGGACTGCTACACG CCTTGCTCCTGTTCACAGTGCAGAATTTGGACTGCTACACG < 41bp 0.759891083066226 0.524210129513725 0.8231964 0.4317314 prediction 0.471361907105003 Functional Loss - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84911046 chr16:84911049 nonsynonymous SNV 0.539 2 24 hm5C_associated_SNPs_71564 0 0 0 0 2 CRISPLD2 chr16:84911116 5'GT 84911116 Upstream 68bp
chr12 106897900 106897900 1 + T C SKCM 106897899 + 106897879 106897919 41 CTCGTGATGGTGGCTTGCGTCTCGGGGAAATGGAACGTGAC CTCGTGATGGTGGCTTGCGTCCCGGGGAAATGGAACGTGAC < 41bp 0.805611463112474 0.569930878756425 0.21872482 0.7882602 prediction 0.471361168712099 Functional Loss - POLR3B ENSG00000013503 CDS Human protein_coding chr12:106897899 chr12:106897900 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_71565 0 0 0 0 1 POLR3B chr12:106897859 3'AG 106897859 Downstream 42bp
chr13 102345033 102345033 1 + G A COAD 102345030 + 102345010 102345050 41 ATGATCGCCGCTGTGAAGACCTCGATGGTGTGGTCTGTGGA ATGATCGCCGCTGTGAAGACCTCAATGGTGTGGTCTGTGGA < 41bp 0.743528788393827 0.507851927789244 0.8444536 0.44979465 prediction 0.471353721209166 Functional Loss - ITGBL1 ENSG00000198542 CDS Human protein_coding chr13:102345030 chr13:102345033 nonsynonymous SNV 0.015 1 24 hm5C_associated_SNPs_71569 0 0 0 0 2 ITGBL1 chr13:102344935 3'AG 102344935 Downstream 99bp
chr13 102345033 102345033 1 + G A COAD 102345030 + 102345010 102345050 41 ATGATCGCCGCTGTGAAGACCTCGATGGTGTGGTCTGTGGA ATGATCGCCGCTGTGAAGACCTCAATGGTGTGGTCTGTGGA < 41bp 0.743528788393827 0.507851927789244 0.8444536 0.44979465 prediction 0.471353721209166 Functional Loss - ITGBL1 ENSG00000198542 CDS Human protein_coding chr13:102345030 chr13:102345033 nonsynonymous SNV 0.015 1 24 hm5C_associated_SNPs_71569 0 0 0 0 2 ITGBL1 chr13:102345051 5'GT 102345051 Upstream 19bp
chr11 33083117 33083117 1 + G C BLCA 33083113 + 33083093 33083133 41 ACCCAGTGGCTGGAAGAAGCCTCAGAGGACCTTATGACTCA ACCCAGTGGCTGGAAGAAGCCTCACAGGACCTTATGACTCA < 41bp 0.735669239338479 0.438441852463664 0.08515161 0.08017966 prediction 0.471338478676958 Functional Loss - TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33083113 chr11:33083117 nonsynonymous SNV 0.147 0 25 hm5C_associated_SNPs_71571 0 0 1 0 1 TCP11L1 chr11:33083076 3'AG 33083076 Downstream 42bp
chr2 169721363 169721363 1 + C T UCEC 169721361 + 169721341 169721381 41 CAGGTGACATTGTGATTATACACGAGAAAAAAGAAGGAGGA CAGGTGACATTGTGATTATACATGAGAAAAAAGAAGGAGGA < 41bp 0.819172315240048 0.583508795398296 0.100052744 0.07946858 prediction 0.471327039683504 Functional Loss - NOSTRIN ENSG00000163072 CDS Human protein_coding chr2:169721361 chr2:169721363 synonymous SNV . 0 23 hm5C_associated_SNPs_71576 0 0 0 0 1 NOSTRIN chr2:169721344 3'AG 169721344 Downstream 20bp
chr17 7604841 7604841 1 + G A UCEC 7604838 + 7604818 7604858 41 ACGCATTCACTGGAGAGCTCCGGGCTTCCTTTCGCGCCTAC ACGCATTCACTGGAGAGCTCCGGACTTCCTTTCGCGCCTAC < 41bp 0.769941194547838 0.534278512573062 0.9084588 0.8713876 prediction 0.471325363949552 Functional Loss - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7604838 chr17:7604841 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_71578 0 0 1 0 3 WRAP53 chr17:7604745 3'AG 7604745 Downstream 97bp
chr17 7604841 7604841 1 + G A UCEC 7604838 + 7604818 7604858 41 ACGCATTCACTGGAGAGCTCCGGGCTTCCTTTCGCGCCTAC ACGCATTCACTGGAGAGCTCCGGACTTCCTTTCGCGCCTAC < 41bp 0.769941194547838 0.534278512573062 0.9084588 0.8713876 prediction 0.471325363949552 Functional Loss - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7604838 chr17:7604841 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_71578 0 0 1 0 3 WRAP53 chr17:7604777 3'AG 7604777 Downstream 65bp
chr17 7604841 7604841 1 + G A UCEC 7604838 + 7604818 7604858 41 ACGCATTCACTGGAGAGCTCCGGGCTTCCTTTCGCGCCTAC ACGCATTCACTGGAGAGCTCCGGACTTCCTTTCGCGCCTAC < 41bp 0.769941194547838 0.534278512573062 0.9084588 0.8713876 prediction 0.471325363949552 Functional Loss - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7604838 chr17:7604841 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_71578 0 0 1 0 3 WRAP53 chr17:7604867 5'GT 7604867 Upstream 27bp
chr4 96069933 96069933 1 + C T UCEC 96069931 + 96069911 96069951 41 AGTTGACATACCACCTAACACTCGAGTTGGCACCAAACGCT AGTTGACATACCACCTAACACTTGAGTTGGCACCAAACGCT < 41bp 0.848823345185676 0.613160704385714 0.12877372 0.113948256 prediction 0.471325281599925 Functional Loss - BMPR1B ENSG00000138696 CDS Human protein_coding chr4:96069931 chr4:96069933 stopgain 0.983 1 23 hm5C_associated_SNPs_71579 0 0 0 0 1 BMPR1B chr4:96069899 3'AG 96069899 Downstream 35bp
chr3 9948059 9948059 1 + G A rs59269999 9948056 + 9948036 9948076 41 TCCCCTGCACAGGTCTTCAACGGGGCCTCTTCCACCTCCTG TCCCCTGCACAGGTCTTCAACGGAGCCTCTTCCACCTCCTG < 41bp 0.759190646909791 0.52353788099462 0.9436899 0.9226855 prediction 0.471305531830342 Functional Loss - IL17RE ENSG00000163701 CDS Human protein_coding chr3:9948056 chr3:9948059 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_71582 0 0 1 0 2 IL17RE chr3:9948048 3'AG 9948048 Downstream 12bp
chr3 9948059 9948059 1 + G A rs59269999 9948056 + 9948036 9948076 41 TCCCCTGCACAGGTCTTCAACGGGGCCTCTTCCACCTCCTG TCCCCTGCACAGGTCTTCAACGGAGCCTCTTCCACCTCCTG < 41bp 0.759190646909791 0.52353788099462 0.9436899 0.9226855 prediction 0.471305531830342 Functional Loss - IL17RE ENSG00000163701 CDS Human protein_coding chr3:9948056 chr3:9948059 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_71582 0 0 1 0 2 IL17RE chr3:9948145 5'GT 9948145 Upstream 87bp
chr16 57707378 57707378 1 + G T LUSC 57707376 + 57707356 57707396 41 CCTGCAATGTGGAAAACTTGCAGAGGTGAGGGGGCCCCCTG CCTGCAATGTGGAAAACTTGCATAGGTGAGGGGGCCCCCTG < 41bp 0.904018665743964 0.668368550071772 0.89183176 0.4838474 prediction 0.471300231344385 Functional Loss - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57707376 chr16:57707378 nonsynonymous SNV 0.162 2 23 hm5C_associated_SNPs_71583 0 0 0 0 1 ADGRG3 chr16:57707380 5'GT 57707380 Upstream 3bp
chr7 141341194 141341194 1 + G T UCEC 141341192 + 141341172 141341212 41 CGTCCTACTGGGCACAACCACAGGATGGTGAGCAATGTGGC CGTCCTACTGGGCACAACCACATGATGGTGAGCAATGTGGC < 41bp 0.892189346858518 0.656540842881762 0.9213929 0.56845117 prediction 0.471297007953512 Functional Loss - AGK ENSG00000006530 CDS Human protein_coding chr7:141341192 chr7:141341194 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_71585 0 0 0 0 1 AGK chr7:141341198 5'GT 141341198 Upstream 5bp
chr11 33682433 33682433 1 + C T SKCM 33682431 + 33682411 33682451 41 AATACGGTGCCAGCAGTGTTCGCCATCCCAGCTGCCAACAG AATACGGTGCCAGCAGTGTTCGTCATCCCAGCTGCCAACAG < 41bp 0.735646199901495 0.443436944962311 0.8489946 0.5068616 prediction 0.471292399802991 Functional Loss - KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33682431 chr11:33682433 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_71588 0 0 0 0 1 KIAA1549L chr11:33682409 3'AG 33682409 Downstream 25bp
chr12 100806614 100806614 1 + C T SKCM 100806612 + 100806592 100806632 41 CATACCAAAGGGGTGGCTATCTCCTTTCTGGTACTTGCTGT CATACCAAAGGGGTGGCTATCTTCTTTCTGGTACTTGCTGT < 41bp 0.735643565278151 0.44142395457718 0.30136856 0.081664264 prediction 0.471287130556301 Functional Loss - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100806612 chr12:100806614 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_71589 1 0 0 0 2 SLC17A8 chr12:100806548 3'AG 100806548 Downstream 67bp
chr12 100806614 100806614 1 + C T SKCM 100806612 + 100806592 100806632 41 CATACCAAAGGGGTGGCTATCTCCTTTCTGGTACTTGCTGT CATACCAAAGGGGTGGCTATCTTCTTTCTGGTACTTGCTGT < 41bp 0.735643565278151 0.44142395457718 0.30136856 0.081664264 prediction 0.471287130556301 Functional Loss - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100806612 chr12:100806614 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_71589 1 0 0 0 2 SLC17A8 chr12:100806658 5'GT 100806658 Upstream 45bp
chr17 18003938 18003938 1 + C T LUSC 18003936 + 18003916 18003956 41 ACAGTCACGCTGACCCAGTGCTCGGAAAAGCTGGTGCAGCT ACAGTCACGCTGACCCAGTGCTTGGAAAAGCTGGTGCAGCT < 41bp 0.735639192369408 0.443688687928519 0.4341045 0.10186395 prediction 0.471278384738815 Functional Loss - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18003936 chr17:18003938 nonsynonymous SNV 0.948 2 23 hm5C_associated_SNPs_71590 0 0 1 1 2 DRG2 chr17:18003883 3'AG 18003883 Downstream 56bp
chr17 18003938 18003938 1 + C T LUSC 18003936 + 18003916 18003956 41 ACAGTCACGCTGACCCAGTGCTCGGAAAAGCTGGTGCAGCT ACAGTCACGCTGACCCAGTGCTTGGAAAAGCTGGTGCAGCT < 41bp 0.735639192369408 0.443688687928519 0.4341045 0.10186395 prediction 0.471278384738815 Functional Loss - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18003936 chr17:18003938 nonsynonymous SNV 0.948 2 23 hm5C_associated_SNPs_71590 0 0 1 1 2 DRG2 chr17:18003973 5'GT 18003973 Upstream 36bp
chr16 28963514 28963514 1 + G A UCEC 28963511 + 28963491 28963531 41 CCTCCTGAAACTCTACCCTCCAGGGGATGAGGAAGGTAAGG CCTCCTGAAACTCTACCCTCCAGAGGATGAGGAAGGTAAGG < 41bp 0.759926524790368 0.524297294216402 0.9077499 0.87370336 prediction 0.471258461147932 Functional Loss - NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28963511 chr16:28963514 nonsynonymous SNV 0.285 0 24 hm5C_associated_SNPs_71592 0 0 1 0 2 NFATC2IP chr16:28963453 3'AG 28963453 Downstream 62bp
chr16 28963514 28963514 1 + G A UCEC 28963511 + 28963491 28963531 41 CCTCCTGAAACTCTACCCTCCAGGGGATGAGGAAGGTAAGG CCTCCTGAAACTCTACCCTCCAGAGGATGAGGAAGGTAAGG < 41bp 0.759926524790368 0.524297294216402 0.9077499 0.87370336 prediction 0.471258461147932 Functional Loss - NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28963511 chr16:28963514 nonsynonymous SNV 0.285 0 24 hm5C_associated_SNPs_71592 0 0 1 0 2 NFATC2IP chr16:28963525 5'GT 28963525 Upstream 12bp
chr21 45736343 45736343 1 + C T UCEC 45736341 + 45736321 45736361 41 GTTCAGAGGCTGGGCTTCGACACCCGTGTAACTGTGCTGGG GTTCAGAGGCTGGGCTTCGACATCCGTGTAACTGTGCTGGG < 41bp 0.735626024332165 0.491416828674614 0.28792328 0.35064495 prediction 0.471252048664331 Functional Loss - PFKL ENSG00000141959 CDS Human protein_coding chr21:45736341 chr21:45736343 nonsynonymous SNV 0.634 4 23 hm5C_associated_SNPs_71594 0 0 1 0 2 PFKL chr21:45736315 3'AG 45736315 Downstream 29bp
chr21 45736343 45736343 1 + C T UCEC 45736341 + 45736321 45736361 41 GTTCAGAGGCTGGGCTTCGACACCCGTGTAACTGTGCTGGG GTTCAGAGGCTGGGCTTCGACATCCGTGTAACTGTGCTGGG < 41bp 0.735626024332165 0.491416828674614 0.28792328 0.35064495 prediction 0.471252048664331 Functional Loss - PFKL ENSG00000141959 CDS Human protein_coding chr21:45736341 chr21:45736343 nonsynonymous SNV 0.634 4 23 hm5C_associated_SNPs_71594 0 0 1 0 2 PFKL chr21:45736407 5'GT 45736407 Upstream 65bp
chr3 180685945 180685945 1 + G T SARC 180685943 + 180685923 180685963 41 ATGATCGAGACAGCCGACATCAGCGTGACAGCAGGAGACGC ATGATCGAGACAGCCGACATCATCGTGACAGCAGGAGACGC < 41bp 0.735622764529039 0.394408764936935 0.8717133 0.41488904 prediction 0.471245529058078 Functional Loss - FXR1 ENSG00000114416 CDS Human protein_coding chr3:180685943 chr3:180685945 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_71597 0 0 1 0 1 FXR1 chr3:180686042 5'GT 180686042 Upstream 98bp
chr2 159663599 159663599 1 + T C rs9869 159663598 + 159663578 159663618 41 ATGTTGCCAAAATACAGACACTGGATGCCCTGAATGACGCA ATGTTGCCAAAATACAGACACCGGATGCCCTGAATGACGCA < 41bp 0.739709885745456 0.504095584569443 0.07508516 0.10950276 prediction 0.471228602352026 Functional Loss - DAPL1 ENSG00000163331 CDS Human protein_coding chr2:159663598 chr2:159663599 nonsynonymous SNV 0.603 1 22 hm5C_associated_SNPs_71603 0 0 0 0 2 DAPL1 chr2:159663567 3'AG 159663567 Downstream 33bp
chr2 159663599 159663599 1 + T C rs9869 159663598 + 159663578 159663618 41 ATGTTGCCAAAATACAGACACTGGATGCCCTGAATGACGCA ATGTTGCCAAAATACAGACACCGGATGCCCTGAATGACGCA < 41bp 0.739709885745456 0.504095584569443 0.07508516 0.10950276 prediction 0.471228602352026 Functional Loss - DAPL1 ENSG00000163331 CDS Human protein_coding chr2:159663598 chr2:159663599 nonsynonymous SNV 0.603 1 22 hm5C_associated_SNPs_71603 0 0 0 0 2 DAPL1 chr2:159663627 5'GT 159663627 Upstream 29bp
chr3 11404346 11404346 1 + G A BLCA 11404343 + 11404323 11404363 41 GTGAGTCGTCCAGGACTGGCCGTGATTGCAGGAGCCCTGGC GTGAGTCGTCCAGGACTGGCCGTAATTGCAGGAGCCCTGGC < 41bp 0.736902941108243 0.501295025588798 0.26364398 0.24962336 prediction 0.471215831038891 Functional Loss - ATG7 ENSG00000197548 CDS Human protein_coding chr3:11404343 chr3:11404346 synonymous SNV . 0 24 hm5C_associated_SNPs_71606 0 0 1 0 1 ATG7 chr3:11404287 3'AG 11404287 Downstream 60bp
chr11 64977543 64977543 1 + A T OV 64977539 + 64977519 64977559 41 TCGGGCAGCATGAGTGCCTACGAGATGCGGATGGCCATTGA TCGGGCAGCATGAGTGCCTACGAGTTGCGGATGGCCATTGA < 41bp 0.88121325205765 0.645606450618144 0.48905316 0.16032079 prediction 0.471213602879012 Functional Loss - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64977539 chr11:64977543 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_71607 0 0 1 0 2 CAPN1 chr11:64977489 3'AG 64977489 Downstream 55bp
chr11 64977543 64977543 1 + A T OV 64977539 + 64977519 64977559 41 TCGGGCAGCATGAGTGCCTACGAGATGCGGATGGCCATTGA TCGGGCAGCATGAGTGCCTACGAGTTGCGGATGGCCATTGA < 41bp 0.88121325205765 0.645606450618144 0.48905316 0.16032079 prediction 0.471213602879012 Functional Loss - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64977539 chr11:64977543 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_71607 0 0 1 0 2 CAPN1 chr11:64977567 5'GT 64977567 Upstream 25bp
chr19 8431098 8431098 1 + G A BLCA 8431095 + 8431075 8431115 41 TCCCATCCTAGTTTGGCCTCCTGGACCACAAGCACCTAGAC TCCCATCCTAGTTTGGCCTCCTGAACCACAAGCACCTAGAC < 41bp 0.740942270851827 0.505341470716371 0.36535114 0.30585444 prediction 0.471201600270912 Functional Loss - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8431095 chr19:8431098 stopgain 0.074 0 24 hm5C_associated_SNPs_71609 0 0 1 0 1 ANGPTL4 chr19:8431086 3'AG 8431086 Downstream 13bp
chr8 146278248 146278248 1 + G A rs571241836 146278245 + 146278225 146278265 41 GCGAGAAGGCCTCAGAGAAACTCGCCCCAGAAGAAGTTCCC GCGAGAAGGCCTCAGAGAAACTCACCCCAGAAGAAGTTCCC < 41bp 0.739388803006313 0.503788502230824 0.3218249 0.21972352 prediction 0.471200601550977 Functional Loss - C8orf33 ENSG00000182307 CDS Human protein_coding chr8:146278245 chr8:146278248 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_71610 0 0 1 0 1 C8orf33 chr8:146278322 5'GT 146278322 Upstream 75bp
chr2 89036088 89036088 1 + G A rs72930711 89036085 + 89036065 89036105 41 AATCTCGGGGATCAGTGGCACAAGGGAATCCCCATCGAGGT AATCTCGGGGATCAGTGGCACAAAGGAATCCCCATCGAGGT < 41bp 0.747167607126737 0.511568349701786 0.40723562 0.08399096 prediction 0.471198514849902 Functional Loss - RPIA ENSG00000153574 CDS Human protein_coding chr2:89036085 chr2:89036088 synonymous SNV . 0 24 hm5C_associated_SNPs_71611 1 0 1 0 1 RPIA chr2:89036052 3'AG 89036052 Downstream 37bp
chr5 126113488 126113488 1 + G C rs189717541 126113487 + 126113467 126113507 41 GCGACGCGCGCTCGACGACACGGCCCGCGAGCGCGCCAAGC GCGACGCGCGCTCGACGACACCGCCCGCGAGCGCGCCAAGC < 41bp 0.735594167023533 0.428079879060533 0.029483408 0.030473173 prediction 0.471188334047067 Functional Loss - LMNB1 ENSG00000113368 CDS Human protein_coding chr5:126113487 chr5:126113488 synonymous SNV . 0 22 hm5C_associated_SNPs_71616 0 0 1 0 1 LMNB1 chr5:126113559 5'GT 126113559 Upstream 72bp
chr11 111963860 111963860 1 + A C rs592626 111963859 + 111963839 111963879 41 ATCTCGGCTCAGCACGATCTCAGCTTACTGCAACCTCCGCC ATCTCGGCTCAGCACGATCTCCGCTTACTGCAACCTCCGCC < 41bp 0.766778842319608 0.531189784214647 0.47124618 0.2645723 prediction 0.471178116209922 Functional Loss - SDHD ENSG00000204370 CDS Human protein_coding chr11:111963859 chr11:111963860 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_71618 0 0 0 0 1 SDHD chr11:111963804 3'AG 111963804 Downstream 57bp
chr12 64377801 64377801 1 + G T LUSC 64377798 + 64377778 64377818 41 AGATGCGAGTTCAGCTTCTCCAGGATCTGCAAGATTTCTTC AGATGCGAGTTCAGCTTCTCCAGTATCTGCAAGATTTCTTC < 41bp 0.735587135310732 0.353894457808593 0.27240717 0.06931138 prediction 0.471174270621464 Functional Loss - SRGAP1 ENSG00000196935 CDS Human protein_coding chr12:64377798 chr12:64377801 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_71619 0 0 0 0 1 SRGAP1 chr12:64377727 3'AG 64377727 Downstream 75bp
chr7 65557837 65557837 1 + C T MESO 65557835 + 65557815 65557855 41 TGGTGCCCTGGGCGGCACTGCGCGCTCCAGCGTCGACTGGC TGGTGCCCTGGGCGGCACTGCGTGCTCCAGCGTCGACTGGC < 41bp 0.757859666688255 0.522272894243494 0.34614024 0.27879852 prediction 0.471173544889521 Functional Loss - ASL ENSG00000126522 CDS Human protein_coding chr7:65557835 chr7:65557837 nonsynonymous SNV 0.138 4 23 hm5C_associated_SNPs_71620 0 0 1 0 1 ASL chr7:65557755 3'AG 65557755 Downstream 83bp
chr19 1453531 1453531 1 + G A rs150959468 1453528 + 1453508 1453548 41 CCCCCGAGGGCAGCCCAGTACACGGCTCCGGGCCCTCCAAG CCCCCGAGGGCAGCCCAGTACACAGCTCCGGGCCCTCCAAG < 41bp 0.746321287101612 0.510735996347031 0.761537 0.31726772 prediction 0.471170581509162 Functional Loss - APC2 ENSG00000115266 CDS Human protein_coding chr19:1453528 chr19:1453531 nonsynonymous SNV 0.014 1 24 hm5C_associated_SNPs_71622 0 0 0 0 1 APC2 chr19:1453610 5'GT 1453610 Upstream 80bp
chr3 40433618 40433618 1 + G A SKCM 40433615 + 40433595 40433635 41 CTGTCATCCAGATCCACAAGCAAGAGGTCCTCCCTCCAGGA CTGTCATCCAGATCCACAAGCAAAAGGTCCTCCCTCCAGGA < 41bp 0.782035480073672 0.546452316316904 0.8937913 0.3832391 prediction 0.471166327513536 Functional Loss - ENTPD3 ENSG00000168032 CDS Human protein_coding chr3:40433615 chr3:40433618 nonsynonymous SNV 0.981 0 24 hm5C_associated_SNPs_71624 0 0 0 0 1 ENTPD3 chr3:40433641 5'GT 40433641 Upstream 24bp
chr2 219267781 219267781 1 + C T rs2227255 219267779 + 219267759 219267799 41 TCTACGTGTTGAAGCGTCCTCACGTGGATGAGTTCCTGCAG TCTACGTGTTGAAGCGTCCTCATGTGGATGAGTTCCTGCAG < 41bp 0.79839429088988 0.562811829238692 0.46519986 0.4513346 prediction 0.471164923302377 Functional Loss - CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219267779 chr2:219267781 synonymous SNV . 0 23 hm5C_associated_SNPs_71625 0 0 1 0 2 CTDSP1 chr2:219267758 3'AG 219267758 Downstream 24bp
chr2 219267781 219267781 1 + C T rs2227255 219267779 + 219267759 219267799 41 TCTACGTGTTGAAGCGTCCTCACGTGGATGAGTTCCTGCAG TCTACGTGTTGAAGCGTCCTCATGTGGATGAGTTCCTGCAG < 41bp 0.79839429088988 0.562811829238692 0.46519986 0.4513346 prediction 0.471164923302377 Functional Loss - CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219267779 chr2:219267781 synonymous SNV . 0 23 hm5C_associated_SNPs_71625 0 0 1 0 2 CTDSP1 chr2:219267850 5'GT 219267850 Upstream 70bp
chr12 52378999 52378999 1 + G A COAD 52378996 + 52378976 52379016 41 GGAAGCCTGGAATTGCTCATCGAGACTTAAAGTCAAAGAAC GGAAGCCTGGAATTGCTCATCGAAACTTAAAGTCAAAGAAC < 41bp 0.735578655572528 0.499824937010129 0.71432185 0.3136084 prediction 0.471157311145056 Functional Loss - ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52378996 chr12:52378999 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_71627 0 0 1 0 1 ACVR1B chr12:52378976 3'AG 52378976 Downstream 24bp
chr12 123341589 123341589 1 + C T rs371812138 123341587 + 123341567 123341607 41 GAGCAAGTCGGAGCTGAGCTCACGGCTGGACACGCTGAGTG GAGCAAGTCGGAGCTGAGCTCATGGCTGGACACGCTGAGTG < 41bp 0.788871776775033 0.553303229033006 0.8774883 0.85580724 prediction 0.471137095484054 Functional Loss - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123341587 chr12:123341589 nonsynonymous SNV 0.733 2 23 hm5C_associated_SNPs_71631 0 0 0 0 1 HIP1R chr12:123341568 3'AG 123341568 Downstream 22bp
chr15 39876366 39876366 1 + T C HNSC 39876365 + 39876345 39876385 41 TGCGCACCATTGTGACCACGCTGCAGGACAGCATCCGCAAA TGCGCACCATTGTGACCACGCCGCAGGACAGCATCCGCAAA < 41bp 0.809997062217808 0.574429209469197 0.5601467 0.87635785 prediction 0.471135705497222 Functional Loss - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39876365 chr15:39876366 nonsynonymous SNV 0.991 3 22 hm5C_associated_SNPs_71632 0 0 1 0 1 THBS1 chr15:39876388 5'GT 39876388 Upstream 23bp
chr18 21723205 21723205 1 + G T UCEC 21723202 + 21723182 21723222 41 AGTTTGCAGCAGCTTATTTTCAAGAACTTACTATGTATAGA AGTTTGCAGCAGCTTATTTTCAATAACTTACTATGTATAGA < 41bp 0.735567011692962 0.368484843330651 0.24856111 0.030798256 prediction 0.471134023385924 Functional Loss - CABYR ENSG00000154040 CDS Human protein_coding chr18:21723202 chr18:21723205 stopgain 1.000 1 24 hm5C_associated_SNPs_71633 0 0 0 0 1 CABYR chr18:21723223 5'GT 21723223 Upstream 19bp
chr9 74865665 74865665 1 + G T LUAD 74865663 + 74865643 74865683 41 TTTAATATCTTGCTCTCTGACAGGAAAGAAACAATTCACTT TTTAATATCTTGCTCTCTGACATGAAAGAAACAATTCACTT < 41bp 0.735566470085731 0.442157181410557 0.6394942 0.2619552 prediction 0.471132940171461 Functional Loss - GDA ENSG00000119125 splicing Human protein_coding chr9:74865663 chr9:74865665 . 0.975 0 23 hm5C_associated_SNPs_71634 0 0 1 0 1 GDA chr9:74865757 5'GT 74865757 Upstream 93bp
chr11 10515090 10515090 1 + G A UCEC 10515087 + 10515067 10515107 41 GTGGACTCACTGGATGTCCACGCGGTGAGTGAGCTTCTGCT GTGGACTCACTGGATGTCCACGCAGTGAGTGAGCTTCTGCT < 41bp 0.76992301010687 0.534356867045093 0.390061 0.12245393 prediction 0.471132286123556 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10515087 chr11:10515090 synonymous SNV . 0 24 hm5C_associated_SNPs_71635 0 0 0 3 1 AMPD3 chr11:10515090 5'GT 10515090 Upstream 1bp
chr7 31126111 31126111 1 + T C COAD 31126110 + 31126090 31126130 41 GCTGGTGGAGACCTTCTTCCCTGAAAGGAGATACTTCTACT GCTGGTGGAGACCTTCTTCCCCGAAAGGAGATACTTCTACT < 41bp 0.794399662088127 0.558843542957059 0.119193256 0.15986285 prediction 0.471112238262137 Functional Loss - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31126110 chr7:31126111 synonymous SNV . 0 22 hm5C_associated_SNPs_71636 0 0 0 0 1 ADCYAP1R1 chr7:31126151 5'GT 31126151 Upstream 41bp
chr16 31434720 31434720 1 + G T LUAD 31434717 + 31434697 31434737 41 CTGGCCATCAGCATTAACTTCTGGGTTCCTGTCCTGCTGAA CTGGCCATCAGCATTAACTTCTGTGTTCCTGTCCTGCTGAA < 41bp 0.735554977480027 0.331375164057921 0.887092 0.36649418 prediction 0.471109954960055 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31434717 chr16:31434720 nonsynonymous SNV 0.612 3 24 hm5C_associated_SNPs_71638 0 0 0 0 2 ITGAD chr16:31434673 3'AG 31434673 Downstream 48bp
chr16 31434720 31434720 1 + G T LUAD 31434717 + 31434697 31434737 41 CTGGCCATCAGCATTAACTTCTGGGTTCCTGTCCTGCTGAA CTGGCCATCAGCATTAACTTCTGTGTTCCTGTCCTGCTGAA < 41bp 0.735554977480027 0.331375164057921 0.887092 0.36649418 prediction 0.471109954960055 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31434717 chr16:31434720 nonsynonymous SNV 0.612 3 24 hm5C_associated_SNPs_71638 0 0 0 0 2 ITGAD chr16:31434780 5'GT 31434780 Upstream 61bp
chr4 71648884 71648884 1 + T C HNSC 71648883 + 71648863 71648903 41 AAGAGGAAAGTTCCTACATACTGGAATCCAATCGGAAGGTT AAGAGGAAAGTTCCTACATACCGGAATCCAATCGGAAGGTT < 41bp 0.758186536260342 0.522635334110783 0.041973025 0.077470034 prediction 0.471102404299118 Functional Loss - RUFY3 ENSG00000018189 CDS Human protein_coding chr4:71648883 chr4:71648884 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_71639 0 0 1 0 2 RUFY3 chr4:71648808 3'AG 71648808 Downstream 77bp
chr4 71648884 71648884 1 + T C HNSC 71648883 + 71648863 71648903 41 AAGAGGAAAGTTCCTACATACTGGAATCCAATCGGAAGGTT AAGAGGAAAGTTCCTACATACCGGAATCCAATCGGAAGGTT < 41bp 0.758186536260342 0.522635334110783 0.041973025 0.077470034 prediction 0.471102404299118 Functional Loss - RUFY3 ENSG00000018189 CDS Human protein_coding chr4:71648883 chr4:71648884 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_71639 0 0 1 0 2 RUFY3 chr4:71648900 5'GT 71648900 Upstream 17bp
chr16 14989420 14989420 1 + C T SARC 14989418 + 14989398 14989438 41 AGCCGGCTACAGGGAGTCCGCGCGCTCGGCCAGGCAGCCTC AGCCGGCTACAGGGAGTCCGCGTGCTCGGCCAGGCAGCCTC < 41bp 0.802004875176942 0.566453867245591 0.25612658 0.279053 prediction 0.471102015862701 Functional Loss - NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14989418 chr16:14989420 nonsynonymous SNV 0.349 1 23 hm5C_associated_SNPs_71640 0 0 1 0 1 NOMO1 chr16:14989371 3'AG 14989371 Downstream 50bp
chr7 148480941 148480941 1 + G T CESC 148480939 + 148480919 148480959 41 ATACAATGCCCTGGTAATGTCTGCATTCAACAATGACGCTG ATACAATGCCCTGGTAATGTCTTCATTCAACAATGACGCTG < 41bp 0.885978179288685 0.650429118117618 0.29398626 0.11310682 prediction 0.471098122342135 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148480939 chr7:148480941 nonsynonymous SNV 0.990 1 23 hm5C_associated_SNPs_71641 0 0 1 0 2 CUL1 chr7:148480875 3'AG 148480875 Downstream 67bp
chr7 148480941 148480941 1 + G T CESC 148480939 + 148480919 148480959 41 ATACAATGCCCTGGTAATGTCTGCATTCAACAATGACGCTG ATACAATGCCCTGGTAATGTCTTCATTCAACAATGACGCTG < 41bp 0.885978179288685 0.650429118117618 0.29398626 0.11310682 prediction 0.471098122342135 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148480939 chr7:148480941 nonsynonymous SNV 0.990 1 23 hm5C_associated_SNPs_71641 0 0 1 0 2 CUL1 chr7:148480982 5'GT 148480982 Upstream 42bp
chr20 34208869 34208869 1 + G A rs34962502 34208866 + 34208846 34208886 41 AACTGGGGCCACCCCCGTTTCACGTGCTTGTATCGAGTCCG AACTGGGGCCACCCCCGTTTCACATGCTTGTATCGAGTCCG < 41bp 0.747519060840689 0.511981388124675 0.06220901 0.023420453 prediction 0.471075345432027 Functional Loss - SPAG4 ENSG00000061656 CDS Human protein_coding chr20:34208866 chr20:34208869 synonymous SNV . 0 24 hm5C_associated_SNPs_71644 0 0 0 0 1 SPAG4 chr20:34208798 3'AG 34208798 Downstream 72bp
chr6 160828180 160828180 1 + T C LIHC 160828179 + 160828159 160828199 41 TGTTTGTGATCTTCCGCTTCCTGCAAGGTGTATTTGGAAAG TGTTTGTGATCTTCCGCTTCCCGCAAGGTGTATTTGGAAAG < 41bp 0.735537002820422 0.46307131342404 0.058605254 0.056572348 prediction 0.471074005640844 Functional Loss - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160828179 chr6:160828180 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_71645 0 0 1 0 1 SLC22A3 chr6:160828227 5'GT 160828227 Upstream 48bp
chr15 74627405 74627405 1 + G A SKCM 74627402 + 74627382 74627422 41 GAAAAAGGTTTCAGGCACCCCTCGAACTCCATCATCATAGA GAAAAAGGTTTCAGGCACCCCTCAAACTCCATCATCATAGA < 41bp 0.740859657985749 0.505322747848127 0.9249189 0.6776607 prediction 0.471073820275243 Functional Loss - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74627402 chr15:74627405 synonymous SNV . 0 24 hm5C_associated_SNPs_71646 0 0 0 0 2 CCDC33 chr15:74627316 3'AG 74627316 Downstream 90bp
chr15 74627405 74627405 1 + G A SKCM 74627402 + 74627382 74627422 41 GAAAAAGGTTTCAGGCACCCCTCGAACTCCATCATCATAGA GAAAAAGGTTTCAGGCACCCCTCAAACTCCATCATCATAGA < 41bp 0.740859657985749 0.505322747848127 0.9249189 0.6776607 prediction 0.471073820275243 Functional Loss - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74627402 chr15:74627405 synonymous SNV . 0 24 hm5C_associated_SNPs_71646 0 0 0 0 2 CCDC33 chr15:74627429 5'GT 74627429 Upstream 25bp
chr4 17843988 17843988 1 + A C COAD 17843984 + 17843964 17844004 41 GAACAGGAGGTGTCAGACTGCTGAAGCCGACTCTGAAAGGT GAACAGGAGGTGTCAGACTGCTGACGCCGACTCTGAAAGGT < 41bp 0.735535686177624 0.328554062170964 0.11475757 0.10270715 prediction 0.471071372355248 Functional Loss - NCAPG ENSG00000109805 CDS Human protein_coding chr4:17843984 chr4:17843988 nonsynonymous SNV 0.012 0 25 hm5C_associated_SNPs_71648 0 0 1 0 2 NCAPG chr4:17843933 3'AG 17843933 Downstream 56bp
chr4 17843988 17843988 1 + A C COAD 17843984 + 17843964 17844004 41 GAACAGGAGGTGTCAGACTGCTGAAGCCGACTCTGAAAGGT GAACAGGAGGTGTCAGACTGCTGACGCCGACTCTGAAAGGT < 41bp 0.735535686177624 0.328554062170964 0.11475757 0.10270715 prediction 0.471071372355248 Functional Loss - NCAPG ENSG00000109805 CDS Human protein_coding chr4:17843984 chr4:17843988 nonsynonymous SNV 0.012 0 25 hm5C_associated_SNPs_71648 0 0 1 0 2 NCAPG chr4:17844002 5'GT 17844002 Upstream 15bp
chrX 119272952 119272952 1 + C T rs782337905 119272950 + 119272930 119272970 41 CTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCA CTGGAGTGCAGTGGCGCGATCTTGGCTCACTGCAACCTCCA < 41bp 0.735534907056353 0.499369834739206 0.9244667 0.61887085 prediction 0.471069814112706 Functional Loss - RHOXF1-AS1 ENSG00000258545 ncRNA_exonic Human antisense chrX:119272950 chrX:119272952 . . 0 23 hm5C_associated_SNPs_71649 0 0 0 0 2 RHOXF1-AS1 chrX:119272905 3'AG 119272905 Downstream 48bp
chrX 119272952 119272952 1 + C T rs782337905 119272950 + 119272930 119272970 41 CTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCA CTGGAGTGCAGTGGCGCGATCTTGGCTCACTGCAACCTCCA < 41bp 0.735534907056353 0.499369834739206 0.9244667 0.61887085 prediction 0.471069814112706 Functional Loss - RHOXF1-AS1 ENSG00000258545 ncRNA_exonic Human antisense chrX:119272950 chrX:119272952 . . 0 23 hm5C_associated_SNPs_71649 0 0 0 0 2 RHOXF1-AS1 chrX:119273026 5'GT 119273026 Upstream 75bp
chr2 36726453 36726453 1 + C T PAAD 36726451 + 36726431 36726471 41 ACTGCATTAATGGTTTCAAACGCGATCACAATGGTTGTCGG ACTGCATTAATGGTTTCAAACGTGATCACAATGGTTGTCGG < 41bp 0.847447926920422 0.611937034048173 0.3522939 0.29607198 prediction 0.471021785744497 Functional Loss - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36726451 chr2:36726453 synonymous SNV . 0 23 hm5C_associated_SNPs_71658 0 0 1 0 2 CRIM1 chr2:36726362 3'AG 36726362 Downstream 92bp
chr2 36726453 36726453 1 + C T PAAD 36726451 + 36726431 36726471 41 ACTGCATTAATGGTTTCAAACGCGATCACAATGGTTGTCGG ACTGCATTAATGGTTTCAAACGTGATCACAATGGTTGTCGG < 41bp 0.847447926920422 0.611937034048173 0.3522939 0.29607198 prediction 0.471021785744497 Functional Loss - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36726451 chr2:36726453 synonymous SNV . 0 23 hm5C_associated_SNPs_71658 0 0 1 0 2 CRIM1 chr2:36726490 5'GT 36726490 Upstream 38bp
chr1 48713044 48713044 1 + G A UCEC 48713041 + 48713021 48713061 41 TGGGGAAAGTTGCTCTGGAGCTGGTTCTGTGGGCTCTCTGG TGGGGAAAGTTGCTCTGGAGCTGATTCTGTGGGCTCTCTGG < 41bp 0.768769034746349 0.533259099069725 0.10591805 0.13201606 prediction 0.471019871353247 Functional Loss - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48713041 chr1:48713044 stopgain 0.898 1 24 hm5C_associated_SNPs_71660 0 0 1 0 1 SLC5A9 chr1:48713007 3'AG 48713007 Downstream 38bp
chr16 81925132 81925132 1 + C T BRCA 81925130 + 81925110 81925150 41 ATCTGGGATGAGAAGTATGACGCGGTGGACATGCAGGACAT ATCTGGGATGAGAAGTATGACGTGGTGGACATGCAGGACAT < 41bp 0.823404347503435 0.587896669063249 0.3597652 0.3653862 prediction 0.471015356880372 Functional Loss - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81925130 chr16:81925132 nonsynonymous SNV 0.626 0 23 hm5C_associated_SNPs_71663 0 0 0 0 2 PLCG2 chr16:81925077 3'AG 81925077 Downstream 56bp
chr16 81925132 81925132 1 + C T BRCA 81925130 + 81925110 81925150 41 ATCTGGGATGAGAAGTATGACGCGGTGGACATGCAGGACAT ATCTGGGATGAGAAGTATGACGTGGTGGACATGCAGGACAT < 41bp 0.823404347503435 0.587896669063249 0.3597652 0.3653862 prediction 0.471015356880372 Functional Loss - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81925130 chr16:81925132 nonsynonymous SNV 0.626 0 23 hm5C_associated_SNPs_71663 0 0 0 0 2 PLCG2 chr16:81925195 5'GT 81925195 Upstream 64bp
chr1 226032928 226032928 1 + G A rs4149229 226032925 + 226032905 226032945 41 CCTGAAAAGTGGGTGAGGTTCAAGTACCCAAAGCTCATCTC CCTGAAAAGTGGGTGAGGTTCAAATACCCAAAGCTCATCTC < 41bp 0.739048609155064 0.503542632285738 0.14157602 0.08896893 prediction 0.471011953738652 Functional Loss - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226032925 chr1:226032928 synonymous SNV . 0 24 hm5C_associated_SNPs_71664 0 0 1 0 1 EPHX1 chr1:226032847 3'AG 226032847 Downstream 82bp
chrX 47074246 47074246 1 + G C SKCM 47074245 + 47074225 47074265 41 GAAAGCTGGGCCGCCACGTGCGGGCGCTGGTGCTTGAGCTG GAAAGCTGGGCCGCCACGTGCCGGCGCTGGTGCTTGAGCTG < 41bp 0.735501878341401 0.417448059855523 0.91051733 0.82389665 prediction 0.471003756682802 Functional Loss - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47074245 chrX:47074246 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_71667 0 0 1 0 1 UBA1 chrX:47074193 3'AG 47074193 Downstream 54bp
chr15 92669369 92669369 1 + T C COAD 92669368 + 92669348 92669388 41 AGAAGCTCAGCCTGTCTGCCCTGGGGGCCATTCGGATGGCC AGAAGCTCAGCCTGTCTGCCCCGGGGGCCATTCGGATGGCC < 41bp 0.735500656454591 0.491094946276195 0.6358923 0.8986604 prediction 0.471001312909181 Functional Loss - SLCO3A1 ENSG00000176463 CDS Human protein_coding chr15:92669368 chr15:92669369 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_71669 0 0 0 0 1 SLCO3A1 chr15:92669291 3'AG 92669291 Downstream 79bp
chr10 118960695 118960695 1 + C T SKCM 118960693 + 118960673 118960713 41 TGGAAGACAGAAAACAGGATCTCCAGGGGCATCTGCAGAAG TGGAAGACAGAAAACAGGATCTTCAGGGGCATCTGCAGAAG < 41bp 0.838793048809313 0.603297151098267 0.9386271 0.38487196 prediction 0.470991795422091 Functional Loss - KCNK18 ENSG00000186795 CDS Human protein_coding chr10:118960693 chr10:118960695 synonymous SNV . 0 23 hm5C_associated_SNPs_71672 0 0 0 0 1 KCNK18 chr10:118960670 3'AG 118960670 Downstream 26bp
chr7 101063376 101063376 1 + G A LGG 101063373 + 101063353 101063393 41 GGCCGGGGCCCTGCGCCAACCTCGTAAGGTAAAGGCCGCTG GGCCGGGGCCCTGCGCCAACCTCATAAGGTAAAGGCCGCTG < 41bp 0.742736887975317 0.507241688571403 0.6390337 0.41214514 prediction 0.470990398807828 Functional Loss - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101063373 chr7:101063376 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_71673 0 0 0 0 1 COL26A1 chr7:101063380 5'GT 101063380 Upstream 5bp
chr19 1526539 1526539 1 + G T rs2256653 1526536 + 1526516 1526556 41 TCCTGACGGAGCCAGAAGTGCGCGACTACCTGCGGGGCCTG TCCTGACGGAGCCAGAAGTGCGCTACTACCTGCGGGGCCTG < 41bp 0.861536956932353 0.62604325772853 0.8060002 0.77291787 prediction 0.470987398407647 Functional Loss - PLK5 ENSG00000185988 UTR5 Human protein_coding chr19:1526536 chr19:1526539 . . 0 24 hm5C_associated_SNPs_71674 0 0 0 0 2 PLK5 chr19:1526485 3'AG 1526485 Downstream 55bp
chr19 1526539 1526539 1 + G T rs2256653 1526536 + 1526516 1526556 41 TCCTGACGGAGCCAGAAGTGCGCGACTACCTGCGGGGCCTG TCCTGACGGAGCCAGAAGTGCGCTACTACCTGCGGGGCCTG < 41bp 0.861536956932353 0.62604325772853 0.8060002 0.77291787 prediction 0.470987398407647 Functional Loss - PLK5 ENSG00000185988 UTR5 Human protein_coding chr19:1526536 chr19:1526539 . . 0 24 hm5C_associated_SNPs_71674 0 0 0 0 2 PLK5 chr19:1526614 5'GT 1526614 Upstream 76bp
chr6 44200588 44200588 1 + G C SKCM 44200584 + 44200564 44200604 41 GCTGCCAAGCCTGGTGCTGGCCCGGCTGGTGTTTGTGCCAC GCTGCCAAGCCTGGTGCTGGCCCGCCTGGTGTTTGTGCCAC < 41bp 0.843701088691783 0.608219370077679 0.046915114 0.020535558 prediction 0.470963437228207 Functional Loss - SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44200584 chr6:44200588 synonymous SNV . 0 25 hm5C_associated_SNPs_71679 0 0 1 0 1 SLC29A1 chr6:44200544 3'AG 44200544 Downstream 45bp
chr3 140401926 140401926 1 + G A SKCM 140401923 + 140401903 140401943 41 AGTTCTCTTTCCACAATGGCCACGACACCATTAGCCTCATC AGTTCTCTTTCCACAATGGCCACAACACCATTAGCCTCATC < 41bp 0.744813146562695 0.50933188371835 0.067647725 0.064801574 prediction 0.470962525688691 Functional Loss - TRIM42 ENSG00000155890 CDS Human protein_coding chr3:140401923 chr3:140401926 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_71680 0 0 0 0 1 TRIM42 chr3:140402001 5'GT 140402001 Upstream 76bp
chr17 6941531 6941531 1 + G A rs150152415 6941528 + 6941508 6941548 41 CTGCCTGTCCTGTTATTTCTCTCGCCGACGATCCCTGGCCA CTGCCTGTCCTGTTATTTCTCTCACCGACGATCCCTGGCCA < 41bp 0.735479134526374 0.482687891469367 0.8031814 0.28789267 prediction 0.470958269052749 Functional Loss - SLC16A13 ENSG00000174327 CDS Human protein_coding chr17:6941528 chr17:6941531 nonsynonymous SNV 0.377 2 24 hm5C_associated_SNPs_71681 0 0 1 0 1 SLC16A13 chr17:6941471 3'AG 6941471 Downstream 61bp
chr3 14725819 14725819 1 + G A rs116284917 14725816 + 14725796 14725836 41 CAGCTCCTCCACCTCAATGCCAAGGAGATGGCCTTCAACTG CAGCTCCTCCACCTCAATGCCAAAGAGATGGCCTTCAACTG < 41bp 0.735473502047927 0.487681747519931 0.20431423 0.13302332 prediction 0.470947004095854 Functional Loss - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14725816 chr3:14725819 synonymous SNV . 0 24 hm5C_associated_SNPs_71686 0 0 1 0 2 C3orf20 chr3:14725749 3'AG 14725749 Downstream 71bp
chr3 14725819 14725819 1 + G A rs116284917 14725816 + 14725796 14725836 41 CAGCTCCTCCACCTCAATGCCAAGGAGATGGCCTTCAACTG CAGCTCCTCCACCTCAATGCCAAAGAGATGGCCTTCAACTG < 41bp 0.735473502047927 0.487681747519931 0.20431423 0.13302332 prediction 0.470947004095854 Functional Loss - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14725816 chr3:14725819 synonymous SNV . 0 24 hm5C_associated_SNPs_71686 0 0 1 0 2 C3orf20 chr3:14725889 5'GT 14725889 Upstream 71bp
chr16 31235527 31235527 1 + G A UCEC 31235524 + 31235504 31235544 41 CTGGAGGAGCTGACCTTTGACCCGAGCTCTGCGCACCCGAG CTGGAGGAGCTGACCTTTGACCCAAGCTCTGCGCACCCGAG < 41bp 0.74125335177589 0.50578198306105 0.5278372 0.27252817 prediction 0.470942737429679 Functional Loss - TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31235524 chr16:31235527 synonymous SNV . 0 24 hm5C_associated_SNPs_71687 0 0 1 0 1 TRIM72 chr16:31235502 3'AG 31235502 Downstream 26bp
chr12 101005838 101005838 1 + C T COAD 101005836 + 101005816 101005856 41 TGCATCAGGTTCATTCTTTGCTCGGGACAATACCGCAAACT TGCATCAGGTTCATTCTTTGCTTGGGACAATACCGCAAACT < 41bp 0.83428990981594 0.598825787148922 0.12834659 0.05236 prediction 0.470928245334036 Functional Loss - GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:101005836 chr12:101005838 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_71696 0 0 1 0 2 GAS2L3 chr12:101005778 3'AG 101005778 Downstream 61bp
chr12 101005838 101005838 1 + C T COAD 101005836 + 101005816 101005856 41 TGCATCAGGTTCATTCTTTGCTCGGGACAATACCGCAAACT TGCATCAGGTTCATTCTTTGCTTGGGACAATACCGCAAACT < 41bp 0.83428990981594 0.598825787148922 0.12834659 0.05236 prediction 0.470928245334036 Functional Loss - GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:101005836 chr12:101005838 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_71696 0 0 1 0 2 GAS2L3 chr12:101005919 5'GT 101005919 Upstream 82bp
chr17 38347604 38347604 1 + G A HNSC 38347601 + 38347581 38347621 41 ACTACGTGTTCCACGGGGAGCGCGGCCGCCGGGAGACGGCC ACTACGTGTTCCACGGGGAGCGCAGCCGCCGGGAGACGGCC < 41bp 0.767362289885716 0.531900006888667 0.4765248 0.5361974 prediction 0.470924565994098 Functional Loss - RAPGEFL1 ENSG00000108352 CDS Human protein_coding chr17:38347601 chr17:38347604 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_71697 0 0 1 0 1 RAPGEFL1 chr17:38347568 3'AG 38347568 Downstream 37bp
chr10 50835824 50835824 1 + C T SKCM 50835822 + 50835802 50835842 41 GGGCCGAGGCCAGGACGGTCCTCGTGAAAGGTCAGCCGCAG GGGCCGAGGCCAGGACGGTCCTTGTGAAAGGTCAGCCGCAG < 41bp 0.735442437622124 0.475054043794139 0.51077634 0.5067486 prediction 0.470884875244248 Functional Loss - CHAT ENSG00000070748 CDS Human protein_coding chr10:50835822 chr10:50835824 synonymous SNV . 0 23 hm5C_associated_SNPs_71704 0 0 0 0 1 CHAT chr10:50835831 5'GT 50835831 Upstream 8bp
chr13 113818928 113818928 1 + G T rs375926497 113818925 + 113818905 113818945 41 GCTGTGCTCAGGGCTACAGGCTTGGTGAGGACCACAAACAG GCTGTGCTCAGGGCTACAGGCTTTGTGAGGACCACAAACAG < 41bp 0.73543303776024 0.33220369258778 0.2116982 0.19391322 prediction 0.470866075520479 Functional Loss - PROZ ENSG00000126231 CDS Human protein_coding chr13:113818925 chr13:113818928 nonsynonymous SNV 0.101 4 24 hm5C_associated_SNPs_71708 0 0 0 0 1 PROZ chr13:113818958 5'GT 113818958 Upstream 31bp
chr17 48187332 48187332 1 + G A COAD 48187329 + 48187309 48187349 41 GACACTCCCCAGGCCCTGTCCACGGACTCGGTGGAGCGCCT GACACTCCCCAGGCCCTGTCCACAGACTCGGTGGAGCGCCT < 41bp 0.736289961242146 0.500858681467318 0.6256764 0.12110728 prediction 0.470862559549655 Functional Loss - PDK2 ENSG00000005882 CDS Human protein_coding chr17:48187329 chr17:48187332 synonymous SNV . 0 24 hm5C_associated_SNPs_71710 0 0 0 0 1 PDK2 chr17:48187321 3'AG 48187321 Downstream 12bp
chr5 153832978 153832978 1 + T C GBM 153832977 + 153832957 153832997 41 CCTAGGTTGATCTGTTCCAGCTGCAGGTGAACACCCTACGA CCTAGGTTGATCTGTTCCAGCCGCAGGTGAACACCCTACGA < 41bp 0.773431103848949 0.538006790247147 0.38870496 0.50549173 prediction 0.470848627203603 Functional Loss - SAP30L ENSG00000164576 CDS Human protein_coding chr5:153832977 chr5:153832978 nonsynonymous SNV 0.854 4 22 hm5C_associated_SNPs_71712 0 0 1 0 3 SAP30L chr5:153832962 3'AG 153832962 Downstream 17bp
chr5 153832978 153832978 1 + T C GBM 153832977 + 153832957 153832997 41 CCTAGGTTGATCTGTTCCAGCTGCAGGTGAACACCCTACGA CCTAGGTTGATCTGTTCCAGCCGCAGGTGAACACCCTACGA < 41bp 0.773431103848949 0.538006790247147 0.38870496 0.50549173 prediction 0.470848627203603 Functional Loss - SAP30L ENSG00000164576 CDS Human protein_coding chr5:153832977 chr5:153832978 nonsynonymous SNV 0.854 4 22 hm5C_associated_SNPs_71712 0 0 1 0 3 SAP30L chr5:153832977 3'AG 153832977 Downstream 2bp
chr5 153832978 153832978 1 + T C GBM 153832977 + 153832957 153832997 41 CCTAGGTTGATCTGTTCCAGCTGCAGGTGAACACCCTACGA CCTAGGTTGATCTGTTCCAGCCGCAGGTGAACACCCTACGA < 41bp 0.773431103848949 0.538006790247147 0.38870496 0.50549173 prediction 0.470848627203603 Functional Loss - SAP30L ENSG00000164576 CDS Human protein_coding chr5:153832977 chr5:153832978 nonsynonymous SNV 0.854 4 22 hm5C_associated_SNPs_71712 0 0 1 0 3 SAP30L chr5:153833060 5'GT 153833060 Upstream 83bp
chr19 54403682 54403682 1 + G A BRCA 54403679 + 54403659 54403699 41 ACCCCGTCCTCCAGGTTCTACGCGGCAGAAATCGCTATCGG ACCCCGTCCTCCAGGTTCTACGCAGCAGAAATCGCTATCGG < 41bp 0.770868585680985 0.535448871617083 0.23745328 0.09452754 prediction 0.470839428127803 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403679 chr19:54403682 synonymous SNV . 0 24 hm5C_associated_SNPs_71714 0 0 0 0 2 PRKCG chr19:54403673 3'AG 54403673 Downstream 10bp
chr19 54403682 54403682 1 + G A BRCA 54403679 + 54403659 54403699 41 ACCCCGTCCTCCAGGTTCTACGCGGCAGAAATCGCTATCGG ACCCCGTCCTCCAGGTTCTACGCAGCAGAAATCGCTATCGG < 41bp 0.770868585680985 0.535448871617083 0.23745328 0.09452754 prediction 0.470839428127803 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403679 chr19:54403682 synonymous SNV . 0 24 hm5C_associated_SNPs_71714 0 0 0 0 2 PRKCG chr19:54403735 5'GT 54403735 Upstream 54bp
chr7 121668654 121668654 1 + T C LUSC 121668653 + 121668633 121668673 41 CTTAGAGGACAGTACATCCCCTAGAGTTATATCCACACCTC CTTAGAGGACAGTACATCCCCCAGAGTTATATCCACACCTC < 41bp 0.785813262807516 0.550393694844071 0.061878532 0.082288176 prediction 0.47083913592689 Functional Loss - PTPRZ1 ENSG00000106278 CDS Human protein_coding chr7:121668653 chr7:121668654 synonymous SNV . 0 22 hm5C_associated_SNPs_71715 0 0 0 0 2 PTPRZ1 chr7:121668606 3'AG 121668606 Downstream 49bp
chr7 121668654 121668654 1 + T C LUSC 121668653 + 121668633 121668673 41 CTTAGAGGACAGTACATCCCCTAGAGTTATATCCACACCTC CTTAGAGGACAGTACATCCCCCAGAGTTATATCCACACCTC < 41bp 0.785813262807516 0.550393694844071 0.061878532 0.082288176 prediction 0.47083913592689 Functional Loss - PTPRZ1 ENSG00000106278 CDS Human protein_coding chr7:121668653 chr7:121668654 synonymous SNV . 0 22 hm5C_associated_SNPs_71715 0 0 0 0 2 PTPRZ1 chr7:121668697 5'GT 121668697 Upstream 44bp
chr12 66725011 66725011 1 + G A rs568388500 66725008 + 66724988 66725028 41 TGGCAGCATGTCTACACCGCCGTGACCAGGGGCCGCTGCCG TGGCAGCATGTCTACACCGCCGTAACCAGGGGCCGCTGCCG < 41bp 0.746576263020492 0.51115727303517 0.082645446 0.08163142 prediction 0.470837979970644 Functional Loss - HELB ENSG00000127311 CDS Human protein_coding chr12:66725008 chr12:66725011 synonymous SNV . 0 24 hm5C_associated_SNPs_71716 0 0 0 0 1 HELB chr12:66724934 3'AG 66724934 Downstream 78bp
chr2 128367270 128367270 1 + G A COAD 128367267 + 128367247 128367287 41 TCCGATACCCGTTGCTTTACCACGAAGATGACACTGACTGC TCCGATACCCGTTGCTTTACCACAAAGATGACACTGACTGC < 41bp 0.735418500872382 0.494047371285257 0.13031411 0.08388555 prediction 0.470837001744763 Functional Loss - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128367267 chr2:128367270 nonsynonymous SNV 0.287 2 24 hm5C_associated_SNPs_71717 0 0 0 0 1 MYO7B chr2:128367290 5'GT 128367290 Upstream 21bp
chr20 53205117 53205117 1 + G T UCEC 53205114 + 53205094 53205134 41 TATTTCAATGACGATACCTCCAAGACTTTTGCTTGCGAATC TATTTCAATGACGATACCTCCAATACTTTTGCTTGCGAATC < 41bp 0.735415279760515 0.352562686025957 0.313004 0.012093723 prediction 0.470830559521031 Functional Loss - DOK5 ENSG00000101134 CDS Human protein_coding chr20:53205114 chr20:53205117 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_71718 0 0 0 0 2 DOK5 chr20:53205022 3'AG 53205022 Downstream 96bp
chr20 53205117 53205117 1 + G T UCEC 53205114 + 53205094 53205134 41 TATTTCAATGACGATACCTCCAAGACTTTTGCTTGCGAATC TATTTCAATGACGATACCTCCAATACTTTTGCTTGCGAATC < 41bp 0.735415279760515 0.352562686025957 0.313004 0.012093723 prediction 0.470830559521031 Functional Loss - DOK5 ENSG00000101134 CDS Human protein_coding chr20:53205114 chr20:53205117 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_71718 0 0 0 0 2 DOK5 chr20:53205136 5'GT 53205136 Upstream 20bp
chr7 99688940 99688940 1 + G A LAML 99688937 + 99688917 99688957 41 AAGCTCATCTTGGAGTACGTCAAGGCCTCTGAAGCGGGTAG AAGCTCATCTTGGAGTACGTCAAAGCCTCTGAAGCGGGTAG < 41bp 0.7354151003699 0.493654612013073 0.5243438 0.27274847 prediction 0.470830200739801 Functional Loss - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99688937 chr7:99688940 synonymous SNV . 0 24 hm5C_associated_SNPs_71719 0 0 1 0 2 COPS6 chr7:99688861 3'AG 99688861 Downstream 80bp
chr7 99688940 99688940 1 + G A LAML 99688937 + 99688917 99688957 41 AAGCTCATCTTGGAGTACGTCAAGGCCTCTGAAGCGGGTAG AAGCTCATCTTGGAGTACGTCAAAGCCTCTGAAGCGGGTAG < 41bp 0.7354151003699 0.493654612013073 0.5243438 0.27274847 prediction 0.470830200739801 Functional Loss - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99688937 chr7:99688940 synonymous SNV . 0 24 hm5C_associated_SNPs_71719 0 0 1 0 2 COPS6 chr7:99688953 5'GT 99688953 Upstream 14bp
chr19 10818192 10818192 1 + G T GBM 10818189 + 10818169 10818209 41 GTTGCAGGTCAATCCGCTGGCTGGACCGGTGCATTGCAGCC GTTGCAGGTCAATCCGCTGGCTGTACCGGTGCATTGCAGCC < 41bp 0.92401753260867 0.688602481459094 0.34981805 0.10195637 prediction 0.470830102299152 Functional Loss - QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10818189 chr19:10818192 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_71720 0 0 1 0 2 QTRT1 chr19:10818176 3'AG 10818176 Downstream 17bp
chr19 10818192 10818192 1 + G T GBM 10818189 + 10818169 10818209 41 GTTGCAGGTCAATCCGCTGGCTGGACCGGTGCATTGCAGCC GTTGCAGGTCAATCCGCTGGCTGTACCGGTGCATTGCAGCC < 41bp 0.92401753260867 0.688602481459094 0.34981805 0.10195637 prediction 0.470830102299152 Functional Loss - QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10818189 chr19:10818192 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_71720 0 0 1 0 2 QTRT1 chr19:10818291 5'GT 10818291 Upstream 100bp
chrX 11316748 11316748 1 + G A UCEC 11316745 + 11316725 11316765 41 GTGCTGTCCCAACAGCACCCCCCGACTCACACCCTGCAGCC GTGCTGTCCCAACAGCACCCCCCAACTCACACCCTGCAGCC < 41bp 0.76790821189449 0.532494167009411 0.013151526 0.020169646 prediction 0.470828089770158 Functional Loss - AMELX ENSG00000125363 CDS Human protein_coding chrX:11316745 chrX:11316748 synonymous SNV . 0 24 hm5C_associated_SNPs_71721 0 0 0 0 1 AMELX chrX:11316668 3'AG 11316668 Downstream 81bp
chr19 55333285 55333285 1 + G A rs112639840 55333282 + 55333262 55333302 41 TCTCCCTACGAGTGGTCAGACCCGAGTGACCCACTGCTTGT TCTCCCTACGAGTGGTCAGACCCAAGTGACCCACTGCTTGT < 41bp 0.748691128640165 0.513281394678891 0.5018884 0.20651945 prediction 0.470819467922549 Functional Loss - KIR3DL1 ENSG00000167633 CDS Human protein_coding chr19:55333282 chr19:55333285 synonymous SNV . 0 24 hm5C_associated_SNPs_71722 0 0 0 0 1 KIR3DL1 chr19:55333313 5'GT 55333313 Upstream 29bp
chr19 56544059 56544059 1 + G A SKCM 56544056 + 56544036 56544076 41 CCCACCCACACCTGCGGCAGCTGGACCTGGGCAGCAGCATC CCCACCCACACCTGCGGCAGCTGAACCTGGGCAGCAGCATC < 41bp 0.762210337326451 0.526803266029671 0.34112912 0.47615388 prediction 0.470814142593561 Functional Loss - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56544056 chr19:56544059 nonsynonymous SNV 0.118 1 24 hm5C_associated_SNPs_71723 0 0 0 0 2 NLRP5 chr19:56543977 3'AG 56543977 Downstream 83bp
chr19 56544059 56544059 1 + G A SKCM 56544056 + 56544036 56544076 41 CCCACCCACACCTGCGGCAGCTGGACCTGGGCAGCAGCATC CCCACCCACACCTGCGGCAGCTGAACCTGGGCAGCAGCATC < 41bp 0.762210337326451 0.526803266029671 0.34112912 0.47615388 prediction 0.470814142593561 Functional Loss - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56544056 chr19:56544059 nonsynonymous SNV 0.118 1 24 hm5C_associated_SNPs_71723 0 0 0 0 2 NLRP5 chr19:56544147 5'GT 56544147 Upstream 89bp
chr6 24403396 24403396 1 + G C LUAD 24403395 + 24403375 24403415 41 CTCCCGTTGCTGCCTGCGGCCGCCGAGCCAACCTGATTGGA CTCCCGTTGCTGCCTGCGGCCCCCGAGCCAACCTGATTGGA < 41bp 0.735405184154092 0.42894133831243 0.34938425 0.09386304 prediction 0.470810368308183 Functional Loss - MRS2 ENSG00000124532 CDS Human protein_coding chr6:24403395 chr6:24403396 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_71725 0 0 1 0 1 MRS2 chr6:24403464 5'GT 24403464 Upstream 69bp
chr19 10369180 10369180 1 + C T SKCM 10369178 + 10369158 10369198 41 CACTACCGCCGCTGGGGGGACTCCGTACTCCTCGTGGACTT CACTACCGCCGCTGGGGGGACTTCGTACTCCTCGTGGACTT < 41bp 0.73540284513659 0.455750632312165 0.695423 0.5463593 prediction 0.470805690273181 Functional Loss - MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10369178 chr19:10369180 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_71728 0 0 1 0 2 MRPL4 chr19:10369089 3'AG 10369089 Downstream 92bp
chr19 10369180 10369180 1 + C T SKCM 10369178 + 10369158 10369198 41 CACTACCGCCGCTGGGGGGACTCCGTACTCCTCGTGGACTT CACTACCGCCGCTGGGGGGACTTCGTACTCCTCGTGGACTT < 41bp 0.73540284513659 0.455750632312165 0.695423 0.5463593 prediction 0.470805690273181 Functional Loss - MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10369178 chr19:10369180 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_71728 0 0 1 0 2 MRPL4 chr19:10369198 5'GT 10369198 Upstream 19bp
chr16 31500047 31500047 1 + C T ESCA 31500045 + 31500025 31500065 41 CTTCACCATGGACATCTACACGCGCCTGCGGCCACGCGCCG CTTCACCATGGACATCTACACGTGCCTGCGGCCACGCGCCG < 41bp 0.73539380195379 0.487274417054381 0.21551669 0.26657337 prediction 0.47078760390758 Functional Loss - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500045 chr16:31500047 nonsynonymous SNV 0.984 3 23 hm5C_associated_SNPs_71731 0 0 0 0 1 SLC5A2 chr16:31500093 5'GT 31500093 Upstream 47bp
chr15 22947044 22947044 1 + G A HNSC 22947041 + 22947021 22947061 41 GCTGAAGAGTACGAGCGTGCCACGCGCTACAACTACACCAG GCTGAAGAGTACGAGCGTGCCACACGCTACAACTACACCAG < 41bp 0.744465341921577 0.509074338095983 0.14919761 0.09750837 prediction 0.470782007651188 Functional Loss - CYFIP1 ENSG00000068793 CDS Human other chr15:22947041 chr15:22947044 synonymous SNV . 0 24 hm5C_associated_SNPs_71733 0 0 1 0 2 CYFIP1 chr15:22946961 3'AG 22946961 Downstream 84bp
chr15 22947044 22947044 1 + G A HNSC 22947041 + 22947021 22947061 41 GCTGAAGAGTACGAGCGTGCCACGCGCTACAACTACACCAG GCTGAAGAGTACGAGCGTGCCACACGCTACAACTACACCAG < 41bp 0.744465341921577 0.509074338095983 0.14919761 0.09750837 prediction 0.470782007651188 Functional Loss - CYFIP1 ENSG00000068793 CDS Human other chr15:22947041 chr15:22947044 synonymous SNV . 0 24 hm5C_associated_SNPs_71733 0 0 1 0 2 CYFIP1 chr15:22947086 5'GT 22947086 Upstream 43bp
chr12 123342707 123342707 1 + G C LUSC 123342706 + 123342686 123342726 41 ACGAGCAGTTCGCAGTGTTGCGGGGCGCTGCTGCCGAGGCC ACGAGCAGTTCGCAGTGTTGCCGGGCGCTGCTGCCGAGGCC < 41bp 0.875656111319783 0.640266531234821 0.91990864 0.8869102 prediction 0.470779160169924 Functional Loss - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123342706 chr12:123342707 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_71735 0 0 1 0 2 HIP1R chr12:123342649 3'AG 123342649 Downstream 59bp
chr12 123342707 123342707 1 + G C LUSC 123342706 + 123342686 123342726 41 ACGAGCAGTTCGCAGTGTTGCGGGGCGCTGCTGCCGAGGCC ACGAGCAGTTCGCAGTGTTGCCGGGCGCTGCTGCCGAGGCC < 41bp 0.875656111319783 0.640266531234821 0.91990864 0.8869102 prediction 0.470779160169924 Functional Loss - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123342706 chr12:123342707 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_71735 0 0 1 0 2 HIP1R chr12:123342796 5'GT 123342796 Upstream 90bp
chr9 101751487 101751487 1 + G A CESC 101751484 + 101751464 101751504 41 CTGGAGAGACCAGTGGGCTGCAGGAGGCAGACGGAGTAGCT CTGGAGAGACCAGTGGGCTGCAGAAGGCAGACGGAGTAGCT < 41bp 0.739555302826072 0.504172797564467 0.8867649 0.7904501 prediction 0.47076501052321 Functional Loss - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101751484 chr9:101751487 nonsynonymous SNV 0.892 2 24 hm5C_associated_SNPs_71738 0 0 0 0 2 COL15A1 chr9:101751460 3'AG 101751460 Downstream 28bp
chr9 101751487 101751487 1 + G A CESC 101751484 + 101751464 101751504 41 CTGGAGAGACCAGTGGGCTGCAGGAGGCAGACGGAGTAGCT CTGGAGAGACCAGTGGGCTGCAGAAGGCAGACGGAGTAGCT < 41bp 0.739555302826072 0.504172797564467 0.8867649 0.7904501 prediction 0.47076501052321 Functional Loss - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101751484 chr9:101751487 nonsynonymous SNV 0.892 2 24 hm5C_associated_SNPs_71738 0 0 0 0 2 COL15A1 chr9:101751540 5'GT 101751540 Upstream 54bp
chr19 58011421 58011421 1 + G T rs12463137 58011418 + 58011398 58011438 41 AGGGTGGCCCGGGCCCTTTCCTCGGTCGTTGTCTCACCGCC AGGGTGGCCCGGGCCCTTTCCTCTGTCGTTGTCTCACCGCC < 41bp 0.856076005106377 0.620694946449918 0.89293647 0.38222516 prediction 0.470762117312919 Functional Loss - ZNF773 ENSG00000152439 UTR5 Human protein_coding chr19:58011418 chr19:58011421 . . 0 24 hm5C_associated_SNPs_71739 0 0 1 0 1 ZNF773 chr19:58011481 5'GT 58011481 Upstream 61bp
chr17 78092070 78092070 1 + C T rs121907943 78092068 + 78092048 78092088 41 CCTGACCAAGGGTGGGGAGGCCCGAGGGGAGCTGTTCTGGG CCTGACCAAGGGTGGGGAGGCCTGAGGGGAGCTGTTCTGGG < 41bp 0.802830804443587 0.567455470207617 0.7451361 0.80403936 prediction 0.470750668471939 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78092068 chr17:78092070 stopgain 0.021 0 23 hm5C_associated_SNPs_71742 2 0 1 0 2 GAA chr17:78091992 3'AG 78091992 Downstream 79bp
chr17 78092070 78092070 1 + C T rs121907943 78092068 + 78092048 78092088 41 CCTGACCAAGGGTGGGGAGGCCCGAGGGGAGCTGTTCTGGG CCTGACCAAGGGTGGGGAGGCCTGAGGGGAGCTGTTCTGGG < 41bp 0.802830804443587 0.567455470207617 0.7451361 0.80403936 prediction 0.470750668471939 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78092068 chr17:78092070 stopgain 0.021 0 23 hm5C_associated_SNPs_71742 2 0 1 0 2 GAA chr17:78092156 5'GT 78092156 Upstream 87bp
chr10 88417836 88417836 1 + C T UCEC 88417834 + 88417814 88417854 41 AACATGTTCATTATCAACCTCGCGGTCAGCGACTTCCTCAT AACATGTTCATTATCAACCTCGTGGTCAGCGACTTCCTCAT < 41bp 0.735374975891438 0.464512200404437 0.09031066 0.045950413 prediction 0.470749951782875 Functional Loss - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88417834 chr10:88417836 nonsynonymous SNV 0.767 4 23 hm5C_associated_SNPs_71743 0 0 0 0 2 OPN4 chr10:88417789 3'AG 88417789 Downstream 48bp
chr10 88417836 88417836 1 + C T UCEC 88417834 + 88417814 88417854 41 AACATGTTCATTATCAACCTCGCGGTCAGCGACTTCCTCAT AACATGTTCATTATCAACCTCGTGGTCAGCGACTTCCTCAT < 41bp 0.735374975891438 0.464512200404437 0.09031066 0.045950413 prediction 0.470749951782875 Functional Loss - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88417834 chr10:88417836 nonsynonymous SNV 0.767 4 23 hm5C_associated_SNPs_71743 0 0 0 0 2 OPN4 chr10:88417922 5'GT 88417922 Upstream 87bp
chr10 88417837 88417837 1 + G A UCEC 88417834 + 88417814 88417854 41 AACATGTTCATTATCAACCTCGCGGTCAGCGACTTCCTCAT AACATGTTCATTATCAACCTCGCAGTCAGCGACTTCCTCAT < 41bp 0.735374975891438 0.487311895122164 0.09031066 0.04193932 prediction 0.470749951782875 Functional Loss - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88417834 chr10:88417837 synonymous SNV . 0 24 hm5C_associated_SNPs_71744 0 0 0 0 2 OPN4 chr10:88417789 3'AG 88417789 Downstream 49bp
chr10 88417837 88417837 1 + G A UCEC 88417834 + 88417814 88417854 41 AACATGTTCATTATCAACCTCGCGGTCAGCGACTTCCTCAT AACATGTTCATTATCAACCTCGCAGTCAGCGACTTCCTCAT < 41bp 0.735374975891438 0.487311895122164 0.09031066 0.04193932 prediction 0.470749951782875 Functional Loss - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88417834 chr10:88417837 synonymous SNV . 0 24 hm5C_associated_SNPs_71744 0 0 0 0 2 OPN4 chr10:88417922 5'GT 88417922 Upstream 86bp
chr1 46871062 46871062 1 + G A SKCM 46871059 + 46871039 46871079 41 CCCAGGGCCAGGACTCCACGCTGGGCTTGAGCCTGAATGAA CCCAGGGCCAGGACTCCACGCTGAGCTTGAGCCTGAATGAA < 41bp 0.778789101160776 0.543416619949141 0.5153652 0.16438967 prediction 0.47074496242327 Functional Loss - FAAH ENSG00000117480 CDS Human protein_coding chr1:46871059 chr1:46871062 nonsynonymous SNV 0.980 5 24 hm5C_associated_SNPs_71746 0 0 0 0 1 FAAH chr1:46871044 3'AG 46871044 Downstream 19bp
chr9 137007838 137007838 1 + G A UCEC 137007835 + 137007815 137007855 41 CCAGCTCACTCGGATCCAGTCTCGGCCGTAAGTCCCTCTGA CCAGCTCACTCGGATCCAGTCTCAGCCGTAAGTCCCTCTGA < 41bp 0.781762445410027 0.546390093243312 0.15935254 0.09888378 prediction 0.470744704333429 Functional Loss - WDR5 ENSG00000196363 CDS Human protein_coding chr9:137007835 chr9:137007838 synonymous SNV . 0 24 hm5C_associated_SNPs_71747 0 0 1 0 2 WDR5 chr9:137007758 3'AG 137007758 Downstream 81bp
chr9 137007838 137007838 1 + G A UCEC 137007835 + 137007815 137007855 41 CCAGCTCACTCGGATCCAGTCTCGGCCGTAAGTCCCTCTGA CCAGCTCACTCGGATCCAGTCTCAGCCGTAAGTCCCTCTGA < 41bp 0.781762445410027 0.546390093243312 0.15935254 0.09888378 prediction 0.470744704333429 Functional Loss - WDR5 ENSG00000196363 CDS Human protein_coding chr9:137007835 chr9:137007838 synonymous SNV . 0 24 hm5C_associated_SNPs_71747 0 0 1 0 2 WDR5 chr9:137007841 5'GT 137007841 Upstream 4bp
chr2 97020014 97020014 1 + G A COAD 97020011 + 97019991 97020031 41 AGAGTGACTGTGGAGACTTCCCCGATGGGTCCCTGGGGGAT AGAGTGACTGTGGAGACTTCCCCAATGGGTCCCTGGGGGAT < 41bp 0.735366127260029 0.493876638762928 0.06870043 0.09639129 prediction 0.470732254520059 Functional Loss - NCAPH ENSG00000121152 CDS Human protein_coding chr2:97020011 chr2:97020014 nonsynonymous SNV 0.068 0 24 hm5C_associated_SNPs_71751 0 0 1 0 1 NCAPH chr2:97019921 3'AG 97019921 Downstream 94bp
chr1 16355699 16355699 1 + T C UCEC 16355698 + 16355678 16355718 41 ACCCAGAACTCCAGCCCACCCTGGCCCGAGGAGCTCGACCC ACCCAGAACTCCAGCCCACCCCGGCCCGAGGAGCTCGACCC < 41bp 0.740247633136325 0.504881848953762 0.08745259 0.13841623 prediction 0.470731568365127 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16355698 chr1:16355699 nonsynonymous SNV 0.019 1 22 hm5C_associated_SNPs_71752 0 0 0 0 1 CLCNKA chr1:16355794 5'GT 16355794 Upstream 96bp
chr22 38039669 38039669 1 + G T UCS 38039666 + 38039646 38039686 41 TCCAGGCTCAGTCAGGCAACCAAGAATTCAGGCAGCAGTCA TCCAGGCTCAGTCAGGCAACCAATAATTCAGGCAGCAGTCA < 41bp 0.735360843370793 0.335621022932968 0.8903897 0.8367902 prediction 0.470721686741585 Functional Loss - SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38039666 chr22:38039669 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_71753 0 0 0 0 1 SH3BP1 chr22:38039651 3'AG 38039651 Downstream 19bp
chr14 58874073 58874073 1 + G A OV 58874070 + 58874050 58874090 41 ACAGAATGGGGATTCAACACCTCGGCAATGCCCTTTTAGTG ACAGAATGGGGATTCAACACCTCAGCAATGCCCTTTTAGTG < 41bp 0.738220945239774 0.50286702156331 0.094091505 0.10838777 prediction 0.470707847352928 Functional Loss - TOMM20L ENSG00000196860 CDS Human protein_coding chr14:58874070 chr14:58874073 nonsynonymous SNV 0.820 0 24 hm5C_associated_SNPs_71754 0 0 0 0 1 TOMM20L chr14:58874044 3'AG 58874044 Downstream 30bp
chr1 197890505 197890505 1 + G A UCEC 197890502 + 197890482 197890522 41 CTCGGAGATGGTCATGCGCGCCCGAGACTCTGTCTACCACC CTCGGAGATGGTCATGCGCGCCCAAGACTCTGTCTACCACC < 41bp 0.74502722663292 0.5096746040912 0.288383 0.08698681 prediction 0.47070524508344 Functional Loss - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197890502 chr1:197890505 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_71756 0 0 0 0 1 LHX9 chr1:197890434 3'AG 197890434 Downstream 72bp
chr21 45707428 45707428 1 + G A UCEC 45707425 + 45707405 45707445 41 CAACTGAAGGCCAAGCCCCCCAAGAAGCCGGAGAGCAGCGC CAACTGAAGGCCAAGCCCCCCAAAAAGCCGGAGAGCAGCGC < 41bp 0.73535208161769 0.496918390624089 0.29524446 0.19837034 prediction 0.47070416323538 Functional Loss - AIRE ENSG00000160224 CDS Human protein_coding chr21:45707425 chr21:45707428 synonymous SNV . 0 24 hm5C_associated_SNPs_71758 0 0 0 0 2 AIRE chr21:45707400 3'AG 45707400 Downstream 29bp
chr21 45707428 45707428 1 + G A UCEC 45707425 + 45707405 45707445 41 CAACTGAAGGCCAAGCCCCCCAAGAAGCCGGAGAGCAGCGC CAACTGAAGGCCAAGCCCCCCAAAAAGCCGGAGAGCAGCGC < 41bp 0.73535208161769 0.496918390624089 0.29524446 0.19837034 prediction 0.47070416323538 Functional Loss - AIRE ENSG00000160224 CDS Human protein_coding chr21:45707425 chr21:45707428 synonymous SNV . 0 24 hm5C_associated_SNPs_71758 0 0 0 0 2 AIRE chr21:45707474 5'GT 45707474 Upstream 47bp
chr13 80095068 80095068 1 + C T SKCM 80095066 + 80095046 80095086 41 ACTTGAAACTGACTCTTCCCCTCCACCATATAGTAGTATTA ACTTGAAACTGACTCTTCCCCTTCACCATATAGTAGTATTA < 41bp 0.735351719327351 0.431139022811643 0.91254735 0.07499948 prediction 0.470703438654701 Functional Loss - NDFIP2 ENSG00000102471 CDS Human protein_coding chr13:80095066 chr13:80095068 nonsynonymous SNV 0.702 2 23 hm5C_associated_SNPs_71759 0 0 1 0 1 NDFIP2 chr13:80095110 5'GT 80095110 Upstream 43bp
chr12 56630209 56630209 1 + C T rs139155884 56630207 + 56630187 56630227 41 GCAGGCGAAAACGAAGGAATCTCGAAACACGCAACTTGGAT GCAGGCGAAAACGAAGGAATCTTGAAACACGCAACTTGGAT < 41bp 0.822280025603829 0.58692948159269 0.93186927 0.85735583 prediction 0.470701088022279 Functional Loss - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56630207 chr12:56630209 synonymous SNV . 0 23 hm5C_associated_SNPs_71761 0 0 1 0 2 SLC39A5 chr12:56630180 3'AG 56630180 Downstream 30bp
chr12 56630209 56630209 1 + C T rs139155884 56630207 + 56630187 56630227 41 GCAGGCGAAAACGAAGGAATCTCGAAACACGCAACTTGGAT GCAGGCGAAAACGAAGGAATCTTGAAACACGCAACTTGGAT < 41bp 0.822280025603829 0.58692948159269 0.93186927 0.85735583 prediction 0.470701088022279 Functional Loss - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56630207 chr12:56630209 synonymous SNV . 0 23 hm5C_associated_SNPs_71761 0 0 1 0 2 SLC39A5 chr12:56630276 5'GT 56630276 Upstream 68bp
chr7 106840692 106840692 1 + T C rs113938562 106840691 + 106840671 106840711 41 ATTAGAAGCAAAGGCTTTGGCTGAAGAACAGAAACGTTTAA ATTAGAAGCAAAGGCTTTGGCCGAAGAACAGAAACGTTTAA < 41bp 0.763267897646856 0.527926124532678 0.15261504 0.25976688 prediction 0.470683546228356 Functional Loss - HBP1 ENSG00000105856 CDS Human protein_coding chr7:106840691 chr7:106840692 synonymous SNV . 0 22 hm5C_associated_SNPs_71765 0 0 1 0 2 HBP1 chr7:106840605 3'AG 106840605 Downstream 88bp
chr7 106840692 106840692 1 + T C rs113938562 106840691 + 106840671 106840711 41 ATTAGAAGCAAAGGCTTTGGCTGAAGAACAGAAACGTTTAA ATTAGAAGCAAAGGCTTTGGCCGAAGAACAGAAACGTTTAA < 41bp 0.763267897646856 0.527926124532678 0.15261504 0.25976688 prediction 0.470683546228356 Functional Loss - HBP1 ENSG00000105856 CDS Human protein_coding chr7:106840691 chr7:106840692 synonymous SNV . 0 22 hm5C_associated_SNPs_71765 0 0 1 0 2 HBP1 chr7:106840746 5'GT 106840746 Upstream 55bp
chr19 14574778 14574778 1 + C T GBM 14574776 + 14574756 14574796 41 CCAGGATCCGAGGCCCGGACCACGGGGTAAGGAAGGAGGGC CCAGGATCCGAGGCCCGGACCATGGGGTAAGGAAGGAGGGC < 41bp 0.746831726983558 0.511495178581847 0.90483993 0.8636091 prediction 0.47067309680342 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574776 chr19:14574778 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_71768 0 0 1 0 1 PKN1 chr19:14574781 5'GT 14574781 Upstream 4bp
chr7 99217518 99217518 1 + G A UCEC 99217515 + 99217495 99217535 41 AGTTCCTCACTATCCTGCCCCGCGAGTTCTACGCCTGGATC AGTTCCTCACTATCCTGCCCCGCAAGTTCTACGCCTGGATC < 41bp 0.752051417039543 0.516717406663666 0.55686045 0.2951795 prediction 0.470668020751755 Functional Loss - ZSCAN25 ENSG00000197037 CDS Human protein_coding chr7:99217515 chr7:99217518 nonsynonymous SNV 0.544 4 24 hm5C_associated_SNPs_71770 0 0 1 0 1 ZSCAN25 chr7:99217616 5'GT 99217616 Upstream 99bp
chr15 27188504 27188504 1 + G A rs75690401 27188501 + 27188481 27188521 41 TCGGCGCTGATAGAGTTTGCCACGGTCAATTACTTTACCAA TCGGCGCTGATAGAGTTTGCCACAGTCAATTACTTTACCAA < 41bp 0.740413972381051 0.505084658275439 0.36573398 0.44618317 prediction 0.470658628211223 Functional Loss - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27188501 chr15:27188504 synonymous SNV . 0 24 hm5C_associated_SNPs_71773 0 0 0 0 1 GABRA5 chr15:27188573 5'GT 27188573 Upstream 70bp
chr5 10261748 10261748 1 + G A rs143444882 10261745 + 10261725 10261765 41 AGCCGAGAAGCTGGGCTTTGCTGGTCTTGTACAGGAGATCT AGCCGAGAAGCTGGGCTTTGCTGATCTTGTACAGGAGATCT < 41bp 0.748944072197161 0.513615016102029 0.7091054 0.54638445 prediction 0.470658112190264 Functional Loss - CCT5 ENSG00000150753 CDS Human protein_coding chr5:10261745 chr5:10261748 nonsynonymous SNV 0.730 3 24 hm5C_associated_SNPs_71774 1 0 1 0 1 CCT5 chr5:10261672 3'AG 10261672 Downstream 77bp
chr7 44152433 44152433 1 + G A BLCA 44152430 + 44152410 44152450 41 TCACCTTGACCGAGCCCTACCGCGGAGGCTGCCAAGCCCAG TCACCTTGACCGAGCCCTACCGCAGAGGCTGCCAAGCCCAG < 41bp 0.758480252159017 0.523153216797891 0.7010984 0.34289935 prediction 0.470654070722252 Functional Loss - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44152430 chr7:44152433 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_71775 0 0 0 0 1 AEBP1 chr7:44152508 5'GT 44152508 Upstream 76bp
chr7 150171186 150171186 1 + G C LUSC 150171185 + 150171165 150171205 41 GTCCTCCTTGTGGGGAAACGCGGTGCTGGAAAAAGTGCAGC GTCCTCCTTGTGGGGAAACGCCGTGCTGGAAAAAGTGCAGC < 41bp 0.735326243043565 0.415767067543983 0.89192194 0.50368166 prediction 0.47065248608713 Functional Loss - GIMAP8 ENSG00000171115 CDS Human protein_coding chr7:150171185 chr7:150171186 nonsynonymous SNV 0.068 4 22 hm5C_associated_SNPs_71776 0 0 0 0 1 GIMAP8 chr7:150171100 3'AG 150171100 Downstream 87bp
chr15 75641615 75641615 1 + G A SKCM 75641612 + 75641592 75641632 41 GACATCCGCCGGTTCGGCCGCTGGGACCTTGGGGGAAAGTG GACATCCGCCGGTTCGGCCGCTGAGACCTTGGGGGAAAGTG < 41bp 0.764816911497276 0.529493881261875 0.18838644 0.15519491 prediction 0.470646060470803 Functional Loss - NEIL1 ENSG00000140398 CDS Human protein_coding chr15:75641612 chr15:75641615 stopgain 0.157 1 24 hm5C_associated_SNPs_71779 0 0 0 0 1 NEIL1 chr15:75641680 5'GT 75641680 Upstream 66bp
chr8 22476454 22476454 1 + T C STAD 22476453 + 22476433 22476473 41 TGATTAACGTGGGGAGCCTGCTGCAGCGCGCGGAGCAGCAG TGATTAACGTGGGGAGCCTGCCGCAGCGCGCGGAGCAGCAG < 41bp 0.805382510818186 0.570063731024444 0.30703878 0.29753166 prediction 0.470637559587485 Functional Loss - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22476453 chr8:22476454 nonsynonymous SNV 0.918 4 22 hm5C_associated_SNPs_71781 0 0 1 0 1 CCAR2 chr8:22476528 5'GT 22476528 Upstream 75bp
chr11 866626 866626 1 + C T LGG 866624 + 866604 866644 41 GTCAAGGCAGACACCTACTGCGCGTAGGCCGCCCACCGCCC GTCAAGGCAGACACCTACTGCGTGTAGGCCGCCCACCGCCC < 41bp 0.749654447523606 0.514341820375064 0.3999319 0.26453894 prediction 0.470625254297085 Functional Loss - TSPAN4 ENSG00000214063 CDS Human protein_coding chr11:866624 chr11:866626 nonsynonymous SNV 0.084 1 23 hm5C_associated_SNPs_71783 0 0 1 0 1 TSPAN4 chr11:866562 3'AG 866562 Downstream 65bp
chr8 75263683 75263683 1 + G T GBM 75263680 + 75263660 75263700 41 CCACTCAGATCATTGATTATCTTGAACAGACTTTCCTGGAT CCACTCAGATCATTGATTATCTTTAACAGACTTTCCTGGAT < 41bp 0.735312376714517 0.361194814741423 0.24855256 0.23085868 prediction 0.470624753429034 Functional Loss - GDAP1 ENSG00000104381 CDS Human protein_coding chr8:75263680 chr8:75263683 stopgain 1.000 1 24 hm5C_associated_SNPs_71784 0 0 1 0 1 GDAP1 chr8:75263701 5'GT 75263701 Upstream 19bp
chr2 33246016 33246016 1 + C T HNSC 33246014 + 33245994 33246034 41 GTCAGAATGGAGGGATGTGTCTCCGGCCACAACTCTGTGTG GTCAGAATGGAGGGATGTGTCTTCGGCCACAACTCTGTGTG < 41bp 0.735308982201905 0.459704457020564 0.26466554 0.20098153 prediction 0.470617964403809 Functional Loss - LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33246014 chr2:33246016 synonymous SNV . 0 23 hm5C_associated_SNPs_71786 0 0 1 0 1 LTBP1 chr2:33245976 3'AG 33245976 Downstream 41bp
chr17 58236674 58236674 1 + G T LUAD 58236672 + 58236652 58236692 41 ATGTCAGGCCCCTGCAGCAGCTGGGGCAGCGCACGGTGATA ATGTCAGGCCCCTGCAGCAGCTTGGGCAGCGCACGGTGATA < 41bp 0.901185138482124 0.665879227597763 0.82809305 0.30914074 prediction 0.470611821768723 Functional Loss - CA4 ENSG00000167434 CDS Human protein_coding chr17:58236672 chr17:58236674 synonymous SNV . 0 23 hm5C_associated_SNPs_71787 0 0 0 0 1 CA4 chr17:58236591 3'AG 58236591 Downstream 84bp
chr19 47858389 47858389 1 + G A SKCM 47858386 + 47858366 47858406 41 TGCTCCTGCGACAAATCCAGCGGGAACCCAGCCTGCCCCAG TGCTCCTGCGACAAATCCAGCGGAAACCCAGCCTGCCCCAG < 41bp 0.779905092943885 0.544600414308974 0.90247977 0.7946873 prediction 0.470609357269822 Functional Loss - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47858386 chr19:47858389 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_71788 0 0 1 0 1 DHX34 chr19:47858296 3'AG 47858296 Downstream 94bp
chr5 61923060 61923060 1 + T C LUSC 61923059 + 61923039 61923079 41 TCAAGGCACAGCAGGAGATGCTAGGAGAACAAGGTTTCCAG TCAAGGCACAGCAGGAGATGCCAGGAGAACAAGGTTTCCAG < 41bp 0.735303744244012 0.497448610086764 0.8146994 0.8963202 prediction 0.470607488488025 Functional Loss - IPO11 ENSG00000086200 CDS Human protein_coding chr5:61923059 chr5:61923060 nonsynonymous SNV 0.803 3 22 hm5C_associated_SNPs_71789 0 0 1 0 1 IPO11 chr5:61922981 3'AG 61922981 Downstream 80bp
chr16 56904597 56904597 1 + G A COAD 56904594 + 56904574 56904614 41 ATCCGCATCATTGCCGTGGTCTCGGTCACTGTGCTGCTGGC ATCCGCATCATTGCCGTGGTCTCAGTCACTGTGCTGCTGGC < 41bp 0.772921202633247 0.537621853638815 0.2220357 0.16803578 prediction 0.470598697988863 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56904594 chr16:56904597 synonymous SNV . 0 24 hm5C_associated_SNPs_71792 0 0 1 0 2 SLC12A3 chr16:56904538 3'AG 56904538 Downstream 60bp
chr16 56904597 56904597 1 + G A COAD 56904594 + 56904574 56904614 41 ATCCGCATCATTGCCGTGGTCTCGGTCACTGTGCTGCTGGC ATCCGCATCATTGCCGTGGTCTCAGTCACTGTGCTGCTGGC < 41bp 0.772921202633247 0.537621853638815 0.2220357 0.16803578 prediction 0.470598697988863 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56904594 chr16:56904597 synonymous SNV . 0 24 hm5C_associated_SNPs_71792 0 0 1 0 2 SLC12A3 chr16:56904648 5'GT 56904648 Upstream 52bp
chr16 84230500 84230500 1 + A C rs2303243 84230499 + 84230479 84230519 41 GGGCCCTACCAGGAGGCTCGCAGGCAGCTGTCTCTCCTCCT GGGCCCTACCAGGAGGCTCGCCGGCAGCTGTCTCTCCTCCT < 41bp 0.773642639903633 0.538343406538396 0.9042586 0.8985365 prediction 0.470598466730473 Functional Loss - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84230499 chr16:84230500 synonymous SNV . 0 22 hm5C_associated_SNPs_71793 0 0 0 0 1 ADAD2 chr16:84230476 3'AG 84230476 Downstream 25bp
chr16 85645058 85645058 1 + G C rs565657609 85645054 + 85645034 85645074 41 ATAGCGTCCGGCCAAGGCCGCAAGGGGGGCGCCGCCGGTGA ATAGCGTCCGGCCAAGGCCGCAAGCGGGGCGCCGCCGGTGA < 41bp 0.821389701562444 0.586095530382672 0.87438303 0.49270824 prediction 0.470588342359545 Functional Loss - GSE1 ENSG00000131149 UTR5 Human protein_coding chr16:85645054 chr16:85645058 . . 0 25 hm5C_associated_SNPs_71795 0 0 1 0 1 GSE1 chr16:85645137 5'GT 85645137 Upstream 80bp
chr20 3016559 3016559 1 + G T UCEC 3016557 + 3016537 3016577 41 GCAGAAGCAGCAGCAGCAGTCAGGGAACCACCCCATCACCG GCAGAAGCAGCAGCAGCAGTCATGGAACCACCCCATCACCG < 41bp 0.904663746839451 0.669369636693864 0.93107736 0.14313304 prediction 0.470588220291174 Functional Loss - PTPRA ENSG00000132670 CDS Human protein_coding chr20:3016557 chr20:3016559 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_71796 0 0 0 0 1 PTPRA chr20:3016587 5'GT 3016587 Upstream 29bp
chr19 35837568 35837568 1 + G A UCEC 35837565 + 35837545 35837585 41 TCGGGGAGCGGCCTCAGGCACAAGAAAATGTGGACTATGTG TCGGGGAGCGGCCTCAGGCACAAAAAAATGTGGACTATGTG < 41bp 0.740196747068672 0.504904155866477 0.45272815 0.36884668 prediction 0.470585182404391 Functional Loss - CD22 ENSG00000012124 CDS Human protein_coding chr19:35837565 chr19:35837568 nonsynonymous SNV 0.021 3 24 hm5C_associated_SNPs_71797 0 0 0 0 1 CD22 chr19:35837469 3'AG 35837469 Downstream 100bp
chr19 49518862 49518862 1 + G A UCEC 49518859 + 49518839 49518879 41 TGCAGGTGGATGACATCAAGCGGGTCTACTCACTCTTCCTG TGCAGGTGGATGACATCAAGCGGATCTACTCACTCTTCCTG < 41bp 0.735292011512253 0.492080173917025 0.8656579 0.6240494 prediction 0.470584023024507 Functional Loss - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49518859 chr19:49518862 nonsynonymous SNV 0.988 1 24 hm5C_associated_SNPs_71798 0 0 1 1 1 RUVBL2 chr19:49518943 5'GT 49518943 Upstream 82bp
chr2 61145339 61145339 1 + T C STAD 61145338 + 61145318 61145358 41 ATATTTAGGTGCTCCAAATACTGCAGAATTAAGGATTTGTC ATATTTAGGTGCTCCAAATACCGCAGAATTAAGGATTTGTC < 41bp 0.735291016454921 0.485613548380202 0.08033252 0.10923034 prediction 0.470582032909843 Functional Loss - REL ENSG00000162924 CDS Human protein_coding chr2:61145338 chr2:61145339 synonymous SNV . 0 22 hm5C_associated_SNPs_71799 0 0 0 0 2 REL chr2:61145326 3'AG 61145326 Downstream 14bp
chr2 61145339 61145339 1 + T C STAD 61145338 + 61145318 61145358 41 ATATTTAGGTGCTCCAAATACTGCAGAATTAAGGATTTGTC ATATTTAGGTGCTCCAAATACCGCAGAATTAAGGATTTGTC < 41bp 0.735291016454921 0.485613548380202 0.08033252 0.10923034 prediction 0.470582032909843 Functional Loss - REL ENSG00000162924 CDS Human protein_coding chr2:61145338 chr2:61145339 synonymous SNV . 0 22 hm5C_associated_SNPs_71799 0 0 0 0 2 REL chr2:61145430 5'GT 61145430 Upstream 92bp
chr20 3785506 3785506 1 + C T UCEC 3785504 + 3785484 3785524 41 AGGACTACCGGCCCATGAACCACGAGGCCTTCAAGGATGAG AGGACTACCGGCCCATGAACCATGAGGCCTTCAAGGATGAG < 41bp 0.799180308432348 0.563890534314574 0.4050358 0.28757092 prediction 0.470579548235548 Functional Loss - CDC25B ENSG00000101224 CDS Human protein_coding chr20:3785504 chr20:3785506 synonymous SNV . 0 23 hm5C_associated_SNPs_71800 0 0 1 0 1 CDC25B chr20:3785468 3'AG 3785468 Downstream 39bp
chr11 6261902 6261902 1 + A C rs545343438 6261901 + 6261881 6261921 41 TGAAGAAGTACATGAAGCTGCAGCACGTCAACCGCAAGCTG TGAAGAAGTACATGAAGCTGCCGCACGTCAACCGCAAGCTG < 41bp 0.735289517919021 0.474160403847057 0.26468188 0.25557774 prediction 0.470579035838042 Functional Loss - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6261901 chr11:6261902 nonsynonymous SNV 0.906 3 22 hm5C_associated_SNPs_71801 0 0 0 0 2 CNGA4 chr11:6261869 3'AG 6261869 Downstream 34bp
chr11 6261902 6261902 1 + A C rs545343438 6261901 + 6261881 6261921 41 TGAAGAAGTACATGAAGCTGCAGCACGTCAACCGCAAGCTG TGAAGAAGTACATGAAGCTGCCGCACGTCAACCGCAAGCTG < 41bp 0.735289517919021 0.474160403847057 0.26468188 0.25557774 prediction 0.470579035838042 Functional Loss - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6261901 chr11:6261902 nonsynonymous SNV 0.906 3 22 hm5C_associated_SNPs_71801 0 0 0 0 2 CNGA4 chr11:6261941 5'GT 6261941 Upstream 40bp
chr20 42213496 42213496 1 + G T LUAD 42213493 + 42213473 42213513 41 CATTGGCTTTTATTGACAGACAGGACCTGCTGACTTGAAGC CATTGGCTTTTATTGACAGACAGTACCTGCTGACTTGAAGC < 41bp 0.735280953844294 0.351675626320904 0.070565075 0.018327504 prediction 0.470561907688587 Functional Loss - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42213493 chr20:42213496 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_71802 0 0 0 2 1 SGK2 chr20:42213492 3'AG 42213492 Downstream 5bp
chr19 58963047 58963047 1 + G T rs116959667 58963045 + 58963025 58963065 41 CTGGGCTGTGGCGCGCGGGTCGGGGCCCGAGGCGGGCGGCC CTGGGCTGTGGCGCGCGGGTCGTGGCCCGAGGCGGGCGGCC < 41bp 0.885958256207323 0.650680719001256 0.8987596 0.4419327 prediction 0.470555074412134 Functional Loss - ZNF324B ENSG00000249471 UTR5 Human protein_coding chr19:58963045 chr19:58963047 . . 0 23 hm5C_associated_SNPs_71803 0 0 0 0 1 ZNF324B chr19:58963071 5'GT 58963071 Upstream 25bp
chr11 720103 720103 1 + G A UCEC 720100 + 720080 720120 41 ATGGACAAGAGCGAAGCCATCACGTCTGTGGACGACGCCAT ATGGACAAGAGCGAAGCCATCACATCTGTGGACGACGCCAT < 41bp 0.736248994840319 0.500979732581918 0.12379673 0.0730941 prediction 0.470538524516802 Functional Loss - EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:720100 chr11:720103 synonymous SNV . 0 24 hm5C_associated_SNPs_71806 0 0 1 0 1 EPS8L2 chr11:720062 3'AG 720062 Downstream 42bp
chr2 1499859 1499859 1 + C T LGG 1499857 + 1499837 1499877 41 ATCTGTGACAACACTGGCCTCACCAGGGTGCCCATGGATGC ATCTGTGACAACACTGGCCTCATCAGGGTGCCCATGGATGC < 41bp 0.735267883911531 0.45692516964655 0.1701712 0.14296153 prediction 0.470535767823062 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1499857 chr2:1499859 nonsynonymous SNV 0.361 2 23 hm5C_associated_SNPs_71807 0 0 0 0 1 TPO chr2:1499761 3'AG 1499761 Downstream 99bp
chr17 7951759 7951759 1 + G C UCEC 7951755 + 7951735 7951775 41 TCACAGAGGAGGCCCCTCGGCGGAGCATCGCCACCTTCCAG TCACAGAGGAGGCCCCTCGGCGGACCATCGCCACCTTCCAG < 41bp 0.856726665318054 0.621460947091751 0.8537259 0.2824434 prediction 0.470531436452605 Functional Loss - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7951755 chr17:7951759 nonsynonymous SNV 0.018 1 25 hm5C_associated_SNPs_71808 0 0 0 0 1 ALOX15B chr17:7951704 3'AG 7951704 Downstream 56bp
chr17 38325656 38325656 1 + G A UCEC 38325653 + 38325633 38325673 41 GCAGCCAAAGCCCTCCCCACCCCGGAGGACTCCCCAGCCAG GCAGCCAAAGCCCTCCCCACCCCAGAGGACTCCCCAGCCAG < 41bp 0.73525441163144 0.4868180997412 0.50782377 0.17633659 prediction 0.470508823262881 Functional Loss - CASC3 ENSG00000108349 CDS Human protein_coding chr17:38325653 chr17:38325656 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_71810 0 0 1 0 2 CASC3 chr17:38325577 3'AG 38325577 Downstream 80bp
chr17 38325656 38325656 1 + G A UCEC 38325653 + 38325633 38325673 41 GCAGCCAAAGCCCTCCCCACCCCGGAGGACTCCCCAGCCAG GCAGCCAAAGCCCTCCCCACCCCAGAGGACTCCCCAGCCAG < 41bp 0.73525441163144 0.4868180997412 0.50782377 0.17633659 prediction 0.470508823262881 Functional Loss - CASC3 ENSG00000108349 CDS Human protein_coding chr17:38325653 chr17:38325656 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_71810 0 0 1 0 2 CASC3 chr17:38325699 5'GT 38325699 Upstream 44bp
chr1 113266594 113266594 1 + G A BLCA 113266591 + 113266571 113266611 41 GCTCTTGGCTGCCCACTGTGCTCGTAGAGACCCTAGAGCTG GCTCTTGGCTGCCCACTGTGCTCATAGAGACCCTAGAGCTG < 41bp 0.735252614117303 0.484274694280855 0.06987047 0.041627645 prediction 0.470505228234606 Functional Loss - FAM19A3 ENSG00000184599 CDS Human protein_coding chr1:113266591 chr1:113266594 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_71811 0 0 0 0 1 FAM19A3 chr1:113266567 3'AG 113266567 Downstream 28bp
chr1 113266593 113266593 1 + C T SKCM 113266591 + 113266571 113266611 41 GCTCTTGGCTGCCCACTGTGCTCGTAGAGACCCTAGAGCTG GCTCTTGGCTGCCCACTGTGCTTGTAGAGACCCTAGAGCTG < 41bp 0.735252614117303 0.471244074846051 0.06987047 0.07004386 prediction 0.470505228234606 Functional Loss - FAM19A3 ENSG00000184599 CDS Human protein_coding chr1:113266591 chr1:113266593 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_71812 0 0 0 0 1 FAM19A3 chr1:113266567 3'AG 113266567 Downstream 27bp
chr7 102113040 102113040 1 + G A rs189692940 102113037 + 102113017 102113057 41 TCCACCGAGTTGGCCTACTTCTCGCTCAGCGCCTGCCCTGG TCCACCGAGTTGGCCTACTTCTCACTCAGCGCCTGCCCTGG < 41bp 0.769255725183117 0.534003544587965 0.3345065 0.07050735 prediction 0.470504361190305 Functional Loss - LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102113037 chr7:102113040 synonymous SNV . 0 24 hm5C_associated_SNPs_71813 0 0 0 0 1 LRWD1 chr7:102113056 5'GT 102113056 Upstream 17bp
chr12 2786966 2786966 1 - C A COAD 2786968 - 2786948 2786988 41 GGCCTTGTCCAGCTCCTCCTCAGCGGTGAGATCTCCAGAGA GGCCTTGTCCAGCTCCTCCTCATCGGTGAGATCTCCAGAGA < 41bp 0.893134022778448 0.657885419348304 0.8819761 0.14958519 prediction 0.470497206860288 Functional Loss - CACNA1C ENSG00000151067 CDS Human antisense chr12:2786968 chr12:2786966 nonsynonymous SNV 0.935 2 23 hm5C_associated_SNPs_71815 0 0 0 0 1 CACNA1C-AS1 chr12:2787063 3'AG 2787063 Downstream 98bp
chr1 156902286 156902286 1 + G A SKCM 156902283 + 156902263 156902303 41 CAGTATCAGATGCAGTTCTCCAAGGCCAAGAGTGCATCCAA CAGTATCAGATGCAGTTCTCCAAAGCCAAGAGTGCATCCAA < 41bp 0.744913752212147 0.509669351765675 0.88740766 0.54643226 prediction 0.470488800892943 Functional Loss - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156902283 chr1:156902286 synonymous SNV . 0 24 hm5C_associated_SNPs_71816 0 0 0 0 2 LRRC71 chr1:156902216 3'AG 156902216 Downstream 71bp
chr1 156902286 156902286 1 + G A SKCM 156902283 + 156902263 156902303 41 CAGTATCAGATGCAGTTCTCCAAGGCCAAGAGTGCATCCAA CAGTATCAGATGCAGTTCTCCAAAGCCAAGAGTGCATCCAA < 41bp 0.744913752212147 0.509669351765675 0.88740766 0.54643226 prediction 0.470488800892943 Functional Loss - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156902283 chr1:156902286 synonymous SNV . 0 24 hm5C_associated_SNPs_71816 0 0 0 0 2 LRRC71 chr1:156902337 5'GT 156902337 Upstream 52bp
chr5 135385184 135385184 1 + G A CESC 135385181 + 135385161 135385201 41 CTTGAAGGTAACGGCCAGTACACGCTTTTGGCCCCGACCAA CTTGAAGGTAACGGCCAGTACACACTTTTGGCCCCGACCAA < 41bp 0.78290952317719 0.547665632466602 0.13550329 0.051223457 prediction 0.470487781421176 Functional Loss - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135385181 chr5:135385184 synonymous SNV . 0 24 hm5C_associated_SNPs_71817 0 0 1 0 2 TGFBI chr5:135385128 3'AG 135385128 Downstream 57bp
chr5 135385184 135385184 1 + G A CESC 135385181 + 135385161 135385201 41 CTTGAAGGTAACGGCCAGTACACGCTTTTGGCCCCGACCAA CTTGAAGGTAACGGCCAGTACACACTTTTGGCCCCGACCAA < 41bp 0.78290952317719 0.547665632466602 0.13550329 0.051223457 prediction 0.470487781421176 Functional Loss - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135385181 chr5:135385184 synonymous SNV . 0 24 hm5C_associated_SNPs_71817 0 0 1 0 2 TGFBI chr5:135385269 5'GT 135385269 Upstream 86bp
chr12 58335598 58335598 1 + G A STAD 58335595 + 58335575 58335615 41 CGTCTGGCCCAGGGGAATCCCCAGCAAGGGTTCTTCTCCAG CGTCTGGCCCAGGGGAATCCCCAACAAGGGTTCTTCTCCAG < 41bp 0.735238057266738 0.493408780377525 0.0827339 0.08117744 prediction 0.470476114533476 Functional Loss - ATP23 ENSG00000166896 CDS Human protein_coding chr12:58335595 chr12:58335598 synonymous SNV . 0 24 hm5C_associated_SNPs_71821 0 0 1 0 1 ATP23 chr12:58335671 5'GT 58335671 Upstream 74bp
chr15 78390770 78390770 1 + C T UCEC 78390768 + 78390748 78390788 41 ATGCCATCACCCGGGGCCTCCACCAGACCATCGTGGACCCA ATGCCATCACCCGGGGCCTCCATCAGACCATCGTGGACCCA < 41bp 0.735236972890185 0.448671760609142 0.22326696 0.30522835 prediction 0.470473945780371 Functional Loss - SH2D7 ENSG00000183476 CDS Human protein_coding chr15:78390768 chr15:78390770 synonymous SNV . 0 23 hm5C_associated_SNPs_71824 0 0 0 0 1 SH2D7 chr15:78390726 3'AG 78390726 Downstream 45bp
chr4 3445868 3445868 1 + C T SKCM 3445866 + 3445846 3445886 41 TGCAGCTGCCCCCGGGCCTTCACCGGCAAGGACTGCGGCAC TGCAGCTGCCCCCGGGCCTTCATCGGCAAGGACTGCGGCAC < 41bp 0.735234995714636 0.488293684098124 0.4035923 0.4214717 prediction 0.470469991429271 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3445866 chr4:3445868 nonsynonymous SNV 0.815 4 23 hm5C_associated_SNPs_71826 0 0 1 0 1 HGFAC chr4:3445888 5'GT 3445888 Upstream 21bp
chr11 12231140 12231140 1 + T C STAD 12231139 + 12231119 12231159 41 CCGATGGCCGCAGGAACACCCTGGAAGGTGAAGACTCTTCT CCGATGGCCGCAGGAACACCCCGGAAGGTGAAGACTCTTCT < 41bp 0.782821909511921 0.547589683155577 0.51169574 0.52969104 prediction 0.470464452712688 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12231139 chr11:12231140 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_71827 0 0 1 0 2 MICAL2 chr11:12231044 3'AG 12231044 Downstream 97bp
chr11 12231140 12231140 1 + T C STAD 12231139 + 12231119 12231159 41 CCGATGGCCGCAGGAACACCCTGGAAGGTGAAGACTCTTCT CCGATGGCCGCAGGAACACCCCGGAAGGTGAAGACTCTTCT < 41bp 0.782821909511921 0.547589683155577 0.51169574 0.52969104 prediction 0.470464452712688 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12231139 chr11:12231140 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_71827 0 0 1 0 2 MICAL2 chr11:12231145 5'GT 12231145 Upstream 6bp
chr19 56694541 56694541 1 + G T COAD 56694538 + 56694518 56694558 41 TCCCACCCTCCACAGCCCTCCAAGAGGAATGTGATGGAGAC TCCCACCCTCCACAGCCCTCCAATAGGAATGTGATGGAGAC < 41bp 0.735230078486123 0.344901657136908 0.52030385 0.13514334 prediction 0.470460156972246 Functional Loss - GALP ENSG00000197487 CDS Human protein_coding chr19:56694538 chr19:56694541 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_71829 0 0 0 0 2 GALP chr19:56694504 3'AG 56694504 Downstream 38bp
chr19 56694541 56694541 1 + G T COAD 56694538 + 56694518 56694558 41 TCCCACCCTCCACAGCCCTCCAAGAGGAATGTGATGGAGAC TCCCACCCTCCACAGCCCTCCAATAGGAATGTGATGGAGAC < 41bp 0.735230078486123 0.344901657136908 0.52030385 0.13514334 prediction 0.470460156972246 Functional Loss - GALP ENSG00000197487 CDS Human protein_coding chr19:56694538 chr19:56694541 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_71829 0 0 0 0 2 GALP chr19:56694581 5'GT 56694581 Upstream 41bp
chr14 77797487 77797487 1 + G T STAD 77797484 + 77797464 77797504 41 CTGCTGGTCTTGGAGGCCTTCCAGGTGTCTCACCCCTGCCG CTGCTGGTCTTGGAGGCCTTCCATGTGTCTCACCCCTGCCG < 41bp 0.735229860731259 0.344323916106347 0.9360672 0.10093406 prediction 0.470459721462518 Functional Loss - GSTZ1 ENSG00000100577 CDS Human protein_coding chr14:77797484 chr14:77797487 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_71830 0 0 0 0 1 GSTZ1 chr14:77797412 3'AG 77797412 Downstream 76bp
chr13 28498435 28498435 1 + G A ESCA 28498432 + 28498412 28498452 41 GCCGGAGGAGAACAAGCGGACGCGCACGGCCTACACGCGCG GCCGGAGGAGAACAAGCGGACGCACACGGCCTACACGCGCG < 41bp 0.750265801208834 0.515040053768788 0.8041141 0.673978 prediction 0.470451494880093 Functional Loss - PDX1 ENSG00000139515 CDS Human protein_coding chr13:28498432 chr13:28498435 nonsynonymous SNV 0.917 5 24 hm5C_associated_SNPs_71832 0 0 0 0 1 PDX1 chr13:28498393 3'AG 28498393 Downstream 43bp
chr11 61507974 61507974 1 + G A LAML 61507971 + 61507951 61507991 41 GAGCCCACATACTTTGCCATCTGGGGCGACAACAAGGCCTT GAGCCCACATACTTTGCCATCTGAGGCGACAACAAGGCCTT < 41bp 0.755358786902919 0.520141083052856 0.9095508 0.8160714 prediction 0.470435407700126 Functional Loss - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507971 chr11:61507974 stopgain 1.000 1 24 hm5C_associated_SNPs_71834 0 0 1 0 2 DAGLA chr11:61507935 3'AG 61507935 Downstream 40bp
chr11 61507974 61507974 1 + G A LAML 61507971 + 61507951 61507991 41 GAGCCCACATACTTTGCCATCTGGGGCGACAACAAGGCCTT GAGCCCACATACTTTGCCATCTGAGGCGACAACAAGGCCTT < 41bp 0.755358786902919 0.520141083052856 0.9095508 0.8160714 prediction 0.470435407700126 Functional Loss - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507971 chr11:61507974 stopgain 1.000 1 24 hm5C_associated_SNPs_71834 0 0 1 0 2 DAGLA chr11:61508064 5'GT 61508064 Upstream 91bp
chr16 20432688 20432688 1 + G T LUAD 20432686 + 20432666 20432706 41 CCAAGATGGTCGAGCACTCCCAGAGCAGCTACGGACTGGGT CCAAGATGGTCGAGCACTCCCATAGCAGCTACGGACTGGGT < 41bp 0.735217287440566 0.368304741590513 0.8886534 0.26219505 prediction 0.470434574881131 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20432686 chr16:20432688 nonsynonymous SNV 0.885 0 23 hm5C_associated_SNPs_71835 0 0 0 0 1 ACSM5 chr16:20432723 5'GT 20432723 Upstream 36bp
chr19 4290477 4290477 1 + G T LUAD 4290474 + 4290454 4290494 41 GGCTTCCTGCATCTGAAGTTCGCGCGGACCCGTGAGAACCA GGCTTCCTGCATCTGAAGTTCGCTCGGACCCGTGAGAACCA < 41bp 0.735216354972641 0.339459136321205 0.63651085 0.32069582 prediction 0.470432709945281 Functional Loss - SHD ENSG00000105251 CDS Human protein_coding chr19:4290474 chr19:4290477 synonymous SNV . 0 24 hm5C_associated_SNPs_71836 0 0 0 0 1 SHD chr19:4290444 3'AG 4290444 Downstream 34bp
chr19 4290476 4290476 1 + C T UCEC 4290474 + 4290454 4290494 41 GGCTTCCTGCATCTGAAGTTCGCGCGGACCCGTGAGAACCA GGCTTCCTGCATCTGAAGTTCGTGCGGACCCGTGAGAACCA < 41bp 0.735216354972641 0.489657400472085 0.63651085 0.52374005 prediction 0.470432709945281 Functional Loss - SHD ENSG00000105251 CDS Human protein_coding chr19:4290474 chr19:4290476 nonsynonymous SNV 0.014 0 23 hm5C_associated_SNPs_71837 0 0 0 0 1 SHD chr19:4290444 3'AG 4290444 Downstream 33bp
chr6 41309788 41309788 1 + C T rs117069761 41309786 + 41309766 41309806 41 CCTTCCAGGCCACAGAACTCCACGCTCCGCCCTGGCCCTGC CCTTCCAGGCCACAGAACTCCATGCTCCGCCCTGGCCCTGC < 41bp 0.786109265617902 0.550893626575539 0.17684507 0.14014691 prediction 0.470431278084726 Functional Loss - NCR2 ENSG00000096264 CDS Human protein_coding chr6:41309786 chr6:41309788 nonsynonymous SNV 0.022 3 23 hm5C_associated_SNPs_71838 0 0 0 0 3 NCR2 chr6:41309738 3'AG 41309738 Downstream 51bp
chr6 41309788 41309788 1 + C T rs117069761 41309786 + 41309766 41309806 41 CCTTCCAGGCCACAGAACTCCACGCTCCGCCCTGGCCCTGC CCTTCCAGGCCACAGAACTCCATGCTCCGCCCTGGCCCTGC < 41bp 0.786109265617902 0.550893626575539 0.17684507 0.14014691 prediction 0.470431278084726 Functional Loss - NCR2 ENSG00000096264 CDS Human protein_coding chr6:41309786 chr6:41309788 nonsynonymous SNV 0.022 3 23 hm5C_associated_SNPs_71838 0 0 0 0 3 NCR2 chr6:41309774 3'AG 41309774 Downstream 15bp
chr6 41309788 41309788 1 + C T rs117069761 41309786 + 41309766 41309806 41 CCTTCCAGGCCACAGAACTCCACGCTCCGCCCTGGCCCTGC CCTTCCAGGCCACAGAACTCCATGCTCCGCCCTGGCCCTGC < 41bp 0.786109265617902 0.550893626575539 0.17684507 0.14014691 prediction 0.470431278084726 Functional Loss - NCR2 ENSG00000096264 CDS Human protein_coding chr6:41309786 chr6:41309788 nonsynonymous SNV 0.022 3 23 hm5C_associated_SNPs_71838 0 0 0 0 3 NCR2 chr6:41309887 5'GT 41309887 Upstream 100bp
chr6 35392157 35392157 1 + G A UCEC 35392154 + 35392134 35392174 41 TGTGGCAGGCAGAGAAGGGGCTGGTGTGGAAGCAGTTGGTG TGTGGCAGGCAGAGAAGGGGCTGATGTGGAAGCAGTTGGTG < 41bp 0.744204393481408 0.508989097419976 0.6970032 0.66932386 prediction 0.470430592122865 Functional Loss - PPARD ENSG00000112033 CDS Human protein_coding chr6:35392154 chr6:35392157 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_71839 0 0 1 0 1 PPARD chr6:35392106 3'AG 35392106 Downstream 52bp
chr1 226027005 226027005 1 + G T LUAD 226027003 + 226026983 226027023 41 TTCTACATTCAAGGAGGGGACTGGGGGTCCCTGATCTGCAC TTCTACATTCAAGGAGGGGACTTGGGGTCCCTGATCTGCAC < 41bp 0.901897934128598 0.666684310577762 0.9042113 0.8546362 prediction 0.470427247101672 Functional Loss - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226027003 chr1:226027005 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_71840 0 0 1 0 1 EPHX1 chr1:226027047 5'GT 226027047 Upstream 43bp
chr11 117064669 117064669 1 + G T UCEC 117064667 + 117064647 117064687 41 TTCTTCTTCTTCCAGGGACTCAGCACCTGGCAGGTGAGCAC TTCTTCTTCTTCCAGGGACTCATCACCTGGCAGGTGAGCAC < 41bp 0.735210706737439 0.384865089551105 0.46775913 0.113257885 prediction 0.470421413474877 Functional Loss - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117064667 chr11:117064669 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_71842 0 0 0 0 1 SIDT2 chr11:117064679 5'GT 117064679 Upstream 11bp
chr12 6948168 6948168 1 + G A SKCM 6948165 + 6948145 6948185 41 CCTGCCCTCATCCCTCCAGGCTCGGGTGCGTCCTCGCTGTG CCTGCCCTCATCCCTCCAGGCTCAGGTGCGTCCTCGCTGTG < 41bp 0.761054332304091 0.525843648402684 0.7783605 0.43469062 prediction 0.470421367802814 Functional Loss - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6948165 chr12:6948168 nonsynonymous SNV 0.913 0 24 hm5C_associated_SNPs_71843 0 0 1 0 1 P3H3 chr12:6948164 3'AG 6948164 Downstream 5bp
chrX 100505991 100505991 1 + T C STAD 100505990 + 100505970 100506010 41 CCATGGTGTGGCTGGCTGTTCTGCATCGGGTCACCATTGCT CCATGGTGTGGCTGGCTGTTCCGCATCGGGTCACCATTGCT < 41bp 0.735206553036335 0.473320215365531 0.19678563 0.04201895 prediction 0.47041310607267 Functional Loss - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100505990 chrX:100505991 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_71844 0 0 0 0 2 DRP2 chrX:100505906 3'AG 100505906 Downstream 86bp
chrX 100505991 100505991 1 + T C STAD 100505990 + 100505970 100506010 41 CCATGGTGTGGCTGGCTGTTCTGCATCGGGTCACCATTGCT CCATGGTGTGGCTGGCTGTTCCGCATCGGGTCACCATTGCT < 41bp 0.735206553036335 0.473320215365531 0.19678563 0.04201895 prediction 0.47041310607267 Functional Loss - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100505990 chrX:100505991 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_71844 0 0 0 0 2 DRP2 chrX:100506072 5'GT 100506072 Upstream 82bp
chr15 101434269 101434269 1 + C T GBM 101434267 + 101434247 101434287 41 CACCTCTCACCGCCCTTTATCTCGGCTCTCTGATCAAAGAG CACCTCTCACCGCCCTTTATCTTGGCTCTCTGATCAAAGAG < 41bp 0.735205534891309 0.450633174222821 0.8027009 0.8112312 prediction 0.470411069782618 Functional Loss - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101434267 chr15:101434269 synonymous SNV . 0 23 hm5C_associated_SNPs_71845 0 0 0 0 1 ALDH1A3 chr15:101434287 5'GT 101434287 Upstream 19bp
chr7 150417173 150417173 1 + G A GBM 150417170 + 150417150 150417190 41 GCTCAGTCCCGGCAGGAGTCCACGCGGAGGCTCATCCTTGT GCTCAGTCCCGGCAGGAGTCCACACGGAGGCTCATCCTTGT < 41bp 0.758011538395834 0.522810437294411 0.58233863 0.31371975 prediction 0.470402202202846 Functional Loss - GIMAP1;GIMAP1-GIMAP5 ENSG00000213203 CDS Human protein_coding chr7:150417170 chr7:150417173 synonymous SNV . 0 24 hm5C_associated_SNPs_71848 0 0 0 0 1 GIMAP1;GIMAP1-GIMAP5 chr7:150417136 3'AG 150417136 Downstream 38bp
chr1 33234356 33234356 1 + C T STAD 33234354 + 33234334 33234374 41 GAGGACGCGCTCTCCATCCGCTCGGAGATGATCCAGCGCAA GAGGACGCGCTCTCCATCCGCTTGGAGATGATCCAGCGCAA < 41bp 0.735199394663762 0.461549063055382 0.3816875 0.13222587 prediction 0.470398789327523 Functional Loss - KIAA1522 ENSG00000162522 CDS Human protein_coding chr1:33234354 chr1:33234356 nonsynonymous SNV 0.989 4 23 hm5C_associated_SNPs_71851 0 0 0 0 1 KIAA1522 chr1:33234376 5'GT 33234376 Upstream 21bp
chr11 8115697 8115697 1 + G A rs146650842 8115694 + 8115674 8115714 41 CGGCAGCTACAGCAGGGGGCCAGGGTGGCGCCGCTAGGAAG CGGCAGCTACAGCAGGGGGCCAGAGTGGCGCCGCTAGGAAG < 41bp 0.78004510428279 0.544845941181959 0.92338157 0.9099961 prediction 0.470398326201662 Functional Loss - TUB ENSG00000166402 CDS Human protein_coding chr11:8115694 chr11:8115697 nonsynonymous SNV 0.975 1 24 hm5C_associated_SNPs_71852 0 0 0 0 1 TUB chr11:8115736 5'GT 8115736 Upstream 40bp
chr1 1246414 1246414 1 + C T rs566981480 1246412 + 1246392 1246432 41 AGACACGTGTAGCCCCAGCCCACGGCTTATTCCTCAAGTCA AGACACGTGTAGCCCCAGCCCATGGCTTATTCCTCAAGTCA < 41bp 0.754928464032057 0.519730245428673 0.1459074 0.10753077 prediction 0.470396437206769 Functional Loss - PUSL1 ENSG00000169972 CDS Human protein_coding chr1:1246412 chr1:1246414 synonymous SNV . 0 23 hm5C_associated_SNPs_71853 0 0 1 0 1 PUSL1 chr1:1246451 5'GT 1246451 Upstream 38bp
chr11 71507088 71507088 1 - C T LGG 71507091 - 71507071 71507111 41 CGCAGGACCCCGACCAGCGACACGATGGCTTCTGGGCAATA CGCAGGACCCCGACCAGCGACACAATGGCTTCTGGGCAATA < 41bp 0.751701584307473 0.516516516782428 0.1743671 0.13065767 prediction 0.470370135050089 Functional Loss - FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71507091 chr11:71507088 nonsynonymous SNV 0.013 1 24 hm5C_associated_SNPs_71858 0 0 0 0 1 FAM86C1 chr11:71507171 3'AG 71507171 Downstream 84bp
chr1 211526730 211526730 1 + C T UCEC 211526728 + 211526708 211526748 41 TACAAATGTGCCTTCTGCCACTCGGTGCTTCACAACCCCCA TACAAATGTGCCTTCTGCCACTTGGTGCTTCACAACCCCCA < 41bp 0.824326775113089 0.589142563769121 0.2659378 0.34921142 prediction 0.470368422687937 Functional Loss - TRAF5 ENSG00000082512 CDS Human protein_coding chr1:211526728 chr1:211526730 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_71860 0 0 0 0 1 TRAF5 chr1:211526799 5'GT 211526799 Upstream 70bp
chr17 78221955 78221955 1 + A T rs111824287 78221951 + 78221931 78221971 41 CTGGACCTGCTGCCCCTGTGCGTGACCTTCCTGCTGTGCTT CTGGACCTGCTGCCCCTGTGCGTGTCCTTCCTGCTGTGCTT < 41bp 0.735180692252445 0.415857023505588 0.33523083 0.20909998 prediction 0.47036138450489 Functional Loss - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78221951 chr17:78221955 nonsynonymous SNV 0.765 4 25 hm5C_associated_SNPs_71862 0 0 0 0 1 SLC26A11 chr17:78221929 3'AG 78221929 Downstream 27bp
chr15 90119447 90119447 1 + G A OV 90119444 + 90119424 90119464 41 GCCCGAAAAATCACCTTCTACTGGGTGGATACCACCGAATG GCCCGAAAAATCACCTTCTACTGAGTGGATACCACCGAATG < 41bp 0.735177634741501 0.495316533966078 0.85511357 0.34175402 prediction 0.470355269483002 Functional Loss - TICRR ENSG00000140534 CDS Human protein_coding chr15:90119444 chr15:90119447 stopgain 1.000 1 24 hm5C_associated_SNPs_71863 0 0 1 0 1 TICRR chr15:90119471 5'GT 90119471 Upstream 25bp
chr12 110353227 110353227 1 + A C BLCA 110353226 + 110353206 110353246 41 AGGTTGCAGAGCGCCGGCTGCAGGCATGGGAAGCAGACCAG AGGTTGCAGAGCGCCGGCTGCCGGCATGGGAAGCAGACCAG < 41bp 0.735170661699404 0.473707672915397 0.82704926 0.8074077 prediction 0.470341323398807 Functional Loss - TCHP ENSG00000139437 CDS Human protein_coding chr12:110353226 chr12:110353227 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_71865 0 0 1 0 1 TCHP chr12:110353208 3'AG 110353208 Downstream 20bp
chr1 32740021 32740021 1 + G T HNSC 32740018 + 32739998 32740038 41 GCCATTATCCCATAGTCCCACTGGATGGCAAGGGCACGGTA GCCATTATCCCATAGTCCCACTGTATGGCAAGGGCACGGTA < 41bp 0.916063835746778 0.680895575363621 0.43485853 0.06764349 prediction 0.470336520766314 Functional Loss - LCK ENSG00000182866 CDS Human protein_coding chr1:32740018 chr1:32740021 nonsynonymous SNV 0.988 2 24 hm5C_associated_SNPs_71867 0 0 0 0 1 LCK chr1:32740035 5'GT 32740035 Upstream 15bp
chr9 136319618 136319618 1 + C T STAD 136319616 + 136319596 136319636 41 GCTCGGTGGCCTGTGTGCAGCTCGACCAAGGCCAGGACGTG GCTCGGTGGCCTGTGTGCAGCTTGACCAAGGCCAGGACGTG < 41bp 0.767694088418699 0.53252849761769 0.10754171 0.09204024 prediction 0.470331181602018 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136319616 chr9:136319618 synonymous SNV . 0 23 hm5C_associated_SNPs_71868 0 0 0 0 1 ADAMTS13 chr9:136319537 3'AG 136319537 Downstream 82bp
chr9 124929150 124929150 1 + G C SKCM 124929146 + 124929126 124929166 41 GAGGGAACCCTGTACTTCCCCAGCGGAAGCCAATACGACGC GAGGGAACCCTGTACTTCCCCAGCCGAAGCCAATACGACGC < 41bp 0.853946771959217 0.618783257475649 0.77469015 0.35538137 prediction 0.470327028967136 Functional Loss - MORN5 ENSG00000185681 CDS Human protein_coding chr9:124929146 chr9:124929150 nonsynonymous SNV 0.223 4 25 hm5C_associated_SNPs_71869 0 0 0 0 1 MORN5 chr9:124929194 5'GT 124929194 Upstream 45bp
chr10 85972941 85972941 1 + C T PRAD 85972939 + 85972919 85972959 41 GTGTTCGACATCAATTCCCACACGGGGGAGATCTGGCTCAA GTGTTCGACATCAATTCCCACATGGGGGAGATCTGGCTCAA < 41bp 0.735160407352901 0.449150064899132 0.22713435 0.8621437 prediction 0.470320814705802 Functional Loss - CDHR1 ENSG00000148600 CDS Human protein_coding chr10:85972939 chr10:85972941 nonsynonymous SNV 0.423 4 23 hm5C_associated_SNPs_71870 1 0 0 0 1 CDHR1 chr10:85972847 3'AG 85972847 Downstream 95bp
chr3 186392939 186392939 1 + C T rs111439697 186392937 + 186392917 186392957 41 GAAGCCTTGGACTTGGAAAGCCCGAAAAACCTTGTCATAAA GAAGCCTTGGACTTGGAAAGCCTGAAAAACCTTGTCATAAA < 41bp 0.735156660679458 0.458795693173661 0.08084595 0.0362373 prediction 0.470313321358915 Functional Loss - HRG ENSG00000113905 CDS Human protein_coding chr3:186392937 chr3:186392939 nonsynonymous SNV 0.221 4 23 hm5C_associated_SNPs_71873 0 0 0 0 2 HRG chr3:186392878 3'AG 186392878 Downstream 62bp
chr3 186392939 186392939 1 + C T rs111439697 186392937 + 186392917 186392957 41 GAAGCCTTGGACTTGGAAAGCCCGAAAAACCTTGTCATAAA GAAGCCTTGGACTTGGAAAGCCTGAAAAACCTTGTCATAAA < 41bp 0.735156660679458 0.458795693173661 0.08084595 0.0362373 prediction 0.470313321358915 Functional Loss - HRG ENSG00000113905 CDS Human protein_coding chr3:186392937 chr3:186392939 nonsynonymous SNV 0.221 4 23 hm5C_associated_SNPs_71873 0 0 0 0 2 HRG chr3:186392979 5'GT 186392979 Upstream 41bp
chr15 89728662 89728662 1 + G A UCEC 89728659 + 89728639 89728679 41 GCTGTGGTTCTTCCAGGGCCCAGGAAACCTTCATGCAATGG GCTGTGGTTCTTCCAGGGCCCAGAAAACCTTCATGCAATGG < 41bp 0.740318463704679 0.505165687620241 0.26686293 0.15483546 prediction 0.470305552168875 Functional Loss - ABHD2 ENSG00000140526 CDS Human protein_coding chr15:89728659 chr15:89728662 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_71874 0 0 1 0 2 ABHD2 chr15:89728655 3'AG 89728655 Downstream 8bp
chr15 89728662 89728662 1 + G A UCEC 89728659 + 89728639 89728679 41 GCTGTGGTTCTTCCAGGGCCCAGGAAACCTTCATGCAATGG GCTGTGGTTCTTCCAGGGCCCAGAAAACCTTCATGCAATGG < 41bp 0.740318463704679 0.505165687620241 0.26686293 0.15483546 prediction 0.470305552168875 Functional Loss - ABHD2 ENSG00000140526 CDS Human protein_coding chr15:89728659 chr15:89728662 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_71874 0 0 1 0 2 ABHD2 chr15:89728747 5'GT 89728747 Upstream 86bp
chr11 379925 379925 1 + C T HNSC 379923 + 379903 379943 41 GGACATGGCTGCGCTGCACGCGCGCACCGGGGACTCGCGTT GGACATGGCTGCGCTGCACGCGTGCACCGGGGACTCGCGTT < 41bp 0.735149867024337 0.479507729182509 0.2236309 0.20445448 prediction 0.470299734048675 Functional Loss - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:379923 chr11:379925 nonsynonymous SNV 0.083 1 23 hm5C_associated_SNPs_71875 0 0 0 0 2 B4GALNT4 chr11:379866 3'AG 379866 Downstream 60bp
chr11 379925 379925 1 + C T HNSC 379923 + 379903 379943 41 GGACATGGCTGCGCTGCACGCGCGCACCGGGGACTCGCGTT GGACATGGCTGCGCTGCACGCGTGCACCGGGGACTCGCGTT < 41bp 0.735149867024337 0.479507729182509 0.2236309 0.20445448 prediction 0.470299734048675 Functional Loss - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:379923 chr11:379925 nonsynonymous SNV 0.083 1 23 hm5C_associated_SNPs_71875 0 0 0 0 2 B4GALNT4 chr11:380019 5'GT 380019 Upstream 95bp
chr2 28785965 28785965 1 + C T STAD 28785963 + 28785943 28785983 41 GGAGCCCTGGGTGACTCTCTCACGGTAAGTGACCCTGATGC GGAGCCCTGGGTGACTCTCTCATGGTAAGTGACCCTGATGC < 41bp 0.735149180886461 0.482454854154477 0.8899104 0.90070796 prediction 0.470298361772923 Functional Loss - PLB1 ENSG00000163803 CDS Human protein_coding chr2:28785963 chr2:28785965 nonsynonymous SNV 0.188 3 23 hm5C_associated_SNPs_71876 0 0 0 0 2 PLB1 chr2:28785908 3'AG 28785908 Downstream 58bp
chr2 28785965 28785965 1 + C T STAD 28785963 + 28785943 28785983 41 GGAGCCCTGGGTGACTCTCTCACGGTAAGTGACCCTGATGC GGAGCCCTGGGTGACTCTCTCATGGTAAGTGACCCTGATGC < 41bp 0.735149180886461 0.482454854154477 0.8899104 0.90070796 prediction 0.470298361772923 Functional Loss - PLB1 ENSG00000163803 CDS Human protein_coding chr2:28785963 chr2:28785965 nonsynonymous SNV 0.188 3 23 hm5C_associated_SNPs_71876 0 0 0 0 2 PLB1 chr2:28785966 5'GT 28785966 Upstream 2bp
chr17 79770851 79770851 1 + C T rs550731385 79770849 + 79770829 79770869 41 CCCGCCCGCCGGCTCCCCCGCCCGGGGCGCAGTGTGCCACC CCCGCCCGCCGGCTCCCCCGCCTGGGGCGCAGTGTGCCACC < 41bp 0.735137711496091 0.493869147766924 0.5777551 0.7280986 prediction 0.470275422992182 Functional Loss - GCGR ENSG00000215644 CDS Human protein_coding chr17:79770849 chr17:79770851 synonymous SNV . 0 23 hm5C_associated_SNPs_71884 0 0 0 0 1 GCGR chr17:79770933 5'GT 79770933 Upstream 83bp
chr19 50939393 50939393 1 + G A rs187765595 50939390 + 50939370 50939410 41 AGTGGCGCCCGCTTCTCCTTCAAGGAGTCCCACAACTCCGC AGTGGCGCCCGCTTCTCCTTCAAAGAGTCCCACAACTCCGC < 41bp 0.784052975675197 0.548916502905946 0.27373105 0.07415441 prediction 0.470272945538504 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50939390 chr19:50939393 synonymous SNV . 0 24 hm5C_associated_SNPs_71886 0 0 0 0 1 MYBPC2 chr19:50939417 5'GT 50939417 Upstream 25bp
chr17 41004951 41004951 1 + G A PAAD 41004948 + 41004928 41004968 41 GCGCCCACTTCAAGGTGGATCTGGATGTAGCAGGTAAGACA GCGCCCACTTCAAGGTGGATCTGAATGTAGCAGGTAAGACA < 41bp 0.761772532531579 0.526640794846275 0.34624222 0.16903862 prediction 0.470263475370609 Functional Loss - AOC3 ENSG00000131471 CDS Human protein_coding chr17:41004948 chr17:41004951 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_71888 0 0 0 0 1 AOC3 chr17:41004960 5'GT 41004960 Upstream 10bp
chr10 126517980 126517980 1 + G T UCEC 126517977 + 126517957 126517997 41 TCCAGTACTGACTTTTTTGACAAGGATGGAGTGATGAAAGA TCCAGTACTGACTTTTTTGACAATGATGGAGTGATGAAAGA < 41bp 0.735124961003123 0.348339263817426 0.4962492 0.25261453 prediction 0.470249922006247 Functional Loss - ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126517977 chr10:126517980 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_71892 0 0 0 0 2 ABRAXAS2 chr10:126517962 3'AG 126517962 Downstream 19bp
chr10 126517980 126517980 1 + G T UCEC 126517977 + 126517957 126517997 41 TCCAGTACTGACTTTTTTGACAAGGATGGAGTGATGAAAGA TCCAGTACTGACTTTTTTGACAATGATGGAGTGATGAAAGA < 41bp 0.735124961003123 0.348339263817426 0.4962492 0.25261453 prediction 0.470249922006247 Functional Loss - ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126517977 chr10:126517980 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_71892 0 0 0 0 2 ABRAXAS2 chr10:126518046 5'GT 126518046 Upstream 67bp
chr3 129694827 129694827 1 + G A GBM 129694824 + 129694804 129694844 41 GTGGAGCGCCTCCTCTTCCTCCGGGAAAACATCCAGCGGCT GTGGAGCGCCTCCTCTTCCTCCGAGAAAACATCCAGCGGCT < 41bp 0.788883271983652 0.553759383361548 0.88541865 0.43999654 prediction 0.470247777244207 Functional Loss - TRH ENSG00000170893 CDS Human protein_coding chr3:129694824 chr3:129694827 synonymous SNV . 0 24 hm5C_associated_SNPs_71893 0 0 0 0 1 TRH chr3:129694870 5'GT 129694870 Upstream 44bp
chr1 9784908 9784908 1 + G A STAD 9784905 + 9784885 9784925 41 CCTACACCATCCTGCGGCGCCACGGGCTTCTCTTCCTCCAC CCTACACCATCCTGCGGCGCCACAGGCTTCTCTTCCTCCAC < 41bp 0.757141678850163 0.52201807620355 0.8943471 0.5857807 prediction 0.470247205293225 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9784905 chr1:9784908 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_71894 0 0 0 0 2 PIK3CD chr1:9784862 3'AG 9784862 Downstream 47bp
chr1 9784908 9784908 1 + G A STAD 9784905 + 9784885 9784925 41 CCTACACCATCCTGCGGCGCCACGGGCTTCTCTTCCTCCAC CCTACACCATCCTGCGGCGCCACAGGCTTCTCTTCCTCCAC < 41bp 0.757141678850163 0.52201807620355 0.8943471 0.5857807 prediction 0.470247205293225 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9784905 chr1:9784908 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_71894 0 0 0 0 2 PIK3CD chr1:9784994 5'GT 9784994 Upstream 87bp
chr16 57717889 57717889 1 + C T rs73554921 57717887 + 57717867 57717907 41 CAGAAGATGCCCCAAAGATCCACGTGGCCCTGGGTGGCAGC CAGAAGATGCCCCAAAGATCCATGTGGCCCTGGGTGGCAGC < 41bp 0.735119884039607 0.474897987214966 0.42496622 0.37274507 prediction 0.470239768079214 Functional Loss - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57717887 chr16:57717889 synonymous SNV . 0 23 hm5C_associated_SNPs_71895 0 0 0 0 1 ADGRG3 chr16:57717844 3'AG 57717844 Downstream 46bp
chr18 8786056 8786056 1 + C T SARC 8786054 + 8786034 8786074 41 CAGACGGGGACACCGGGAGCCACGGGCTGGGAGGCCAGACC CAGACGGGGACACCGGGAGCCATGGGCTGGGAGGCCAGACC < 41bp 0.796828373516911 0.561709000358277 0.9041811 0.9052321 prediction 0.470238746317267 Functional Loss - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8786054 chr18:8786056 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_71896 0 0 1 0 1 MTCL1 chr18:8786089 5'GT 8786089 Upstream 34bp
chrY 2846008 2846008 1 + G T BLCA 2846006 + 2845986 2846026 41 AATTCTGATGGAATTGAAAACCGGAATGGCACTGCAAGTGC AATTCTGATGGAATTGAAAACCTGAATGGCACTGCAAGTGC < 41bp 0.735116330485692 0.403473126199084 0.31177622 0.11785063 prediction 0.470232660971384 Functional Loss - ZFY ENSG00000067646 CDS Human protein_coding chrY:2846006 chrY:2846008 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_71898 0 0 0 0 1 ZFY chrY:2845981 3'AG 2845981 Downstream 28bp
chr11 61488302 61488302 1 + G T THCA 61488299 + 61488279 61488319 41 CCATCATCTGGCTGAGCATGCGCGGGGGCATCCTCTACACG CCATCATCTGGCTGAGCATGCGCTGGGGCATCCTCTACACG < 41bp 0.735106305904684 0.327415042744064 0.7928456 0.32975182 prediction 0.470212611809367 Functional Loss - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61488299 chr11:61488302 nonsynonymous SNV 0.987 5 24 hm5C_associated_SNPs_71901 0 0 1 0 1 DAGLA chr11:61488362 5'GT 61488362 Upstream 61bp
chr3 125694457 125694457 1 + T C rs61736423 125694456 + 125694436 125694476 41 GCCTCCGGTGAGAGAGCGGTCTGAGCGAGTCGCTTTGTGTA GCCTCCGGTGAGAGAGCGGTCCGAGCGAGTCGCTTTGTGTA < 41bp 0.759660314852475 0.524560337580508 0.6811155 0.6162219 prediction 0.470199954543935 Functional Loss - ROPN1B ENSG00000114547 CDS Human protein_coding chr3:125694456 chr3:125694457 synonymous SNV . 0 22 hm5C_associated_SNPs_71902 0 0 0 0 1 ROPN1B chr3:125694523 5'GT 125694523 Upstream 67bp
chr9 90301581 90301581 1 + G A UCEC 90301578 + 90301558 90301598 41 ATGCTGGAGGTGTTTGTGGCCCCGACCCACCACCCGCACTG ATGCTGGAGGTGTTTGTGGCCCCAACCCACCACCCGCACTG < 41bp 0.74731153454208 0.512216111066201 0.23402578 0.35191494 prediction 0.470190846951757 Functional Loss - DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90301578 chr9:90301581 synonymous SNV . 0 24 hm5C_associated_SNPs_71905 0 0 0 0 1 DAPK1 chr9:90301654 5'GT 90301654 Upstream 74bp
chr14 73425327 73425327 1 + G T UCEC 73425325 + 73425305 73425345 41 TCTCCTCTTTCCTAGTGGGCCAGGACTGCTACACGAGAATC TCTCCTCTTTCCTAGTGGGCCATGACTGCTACACGAGAATC < 41bp 0.735091490159508 0.393610939303134 0.5919056 0.28131574 prediction 0.470182980319016 Functional Loss - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73425325 chr14:73425327 nonsynonymous SNV 0.976 4 23 hm5C_associated_SNPs_71906 0 0 1 0 1 DCAF4 chr14:73425320 3'AG 73425320 Downstream 8bp
chr10 71258151 71258151 1 + C T LUSC 71258149 + 71258129 71258169 41 TACACCTGCTGCATCAGGAACACGGTAGACACTGCTCCTGT TACACCTGCTGCATCAGGAACATGGTAGACACTGCTCCTGT < 41bp 0.790608911480474 0.555518625683308 0.606611 0.7558037 prediction 0.470180571594331 Functional Loss - TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71258149 chr10:71258151 nonsynonymous SNV 0.987 0 23 hm5C_associated_SNPs_71907 0 0 0 0 1 TSPAN15 chr10:71258152 5'GT 71258152 Upstream 2bp
chr7 28220098 28220098 1 + G T LUSC 28220095 + 28220075 28220115 41 CATTTACCGATGTGGTTGTCCTCGATGTGCTCGATGAGGTC CATTTACCGATGTGGTTGTCCTCTATGTGCTCGATGAGGTC < 41bp 0.90632875799427 0.671243606329673 0.7404953 0.89052296 prediction 0.470170303329194 Functional Loss - JAZF1 ENSG00000153814 CDS Human protein_coding chr7:28220095 chr7:28220098 synonymous SNV . 0 24 hm5C_associated_SNPs_71910 0 0 0 0 1 JAZF1 chr7:28220158 5'GT 28220158 Upstream 61bp
chr1 203044760 203044760 1 + G A rs200628828 203044757 + 203044737 203044777 41 CTGGAGGAAGCGCTTCCGGCCGCGGGAGCACCACGGTCGCG CTGGAGGAAGCGCTTCCGGCCGCAGGAGCACCACGGTCGCG < 41bp 0.758735956775519 0.523652173107528 0.91398525 0.5268927 prediction 0.470167567335982 Functional Loss - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203044757 chr1:203044760 nonsynonymous SNV 0.825 3 24 hm5C_associated_SNPs_71912 0 0 0 0 1 PPFIA4 chr1:203044705 3'AG 203044705 Downstream 56bp
chr1 109260466 109260466 1 + T C rs537197955 109260465 + 109260445 109260485 41 CAGTATCACTGTAGAATGGGCTACAGTGCCGGGTGCCACCA CAGTATCACTGTAGAATGGGCCACAGTGCCGGGTGCCACCA < 41bp 0.735082953004873 0.476228052027014 0.04219851 0.017111331 prediction 0.470165906009747 Functional Loss - FNDC7 ENSG00000143107 CDS Human protein_coding chr1:109260465 chr1:109260466 synonymous SNV . 0 22 hm5C_associated_SNPs_71915 0 0 0 0 1 FNDC7 chr1:109260399 3'AG 109260399 Downstream 68bp
chr7 27285560 27285560 1 + G A SKCM 27285557 + 27285537 27285577 41 GCGGCAGCGCCTGGCCATGACGTGGCCGCACCCGGCGGACC GCGGCAGCGCCTGGCCATGACGTAGCCGCACCCGGCGGACC < 41bp 0.761618510564213 0.526537727124369 0.45411536 0.17308575 prediction 0.470161566879689 Functional Loss - EVX1 ENSG00000106038 CDS Human protein_coding chr7:27285557 chr7:27285560 stopgain 1.000 1 24 hm5C_associated_SNPs_71917 0 0 0 0 1 EVX1 chr7:27285505 3'AG 27285505 Downstream 56bp
chr11 32615458 32615458 1 + G C HNSC 32615454 + 32615434 32615474 41 GTGGAATTGCTCGGAAGTTACACAGAGGACAATGCTTCCCA GTGGAATTGCTCGGAAGTTACACACAGGACAATGCTTCCCA < 41bp 0.828608544898996 0.593527771821184 0.043667257 0.009908825 prediction 0.470161546155624 Functional Loss - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32615454 chr11:32615458 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_71918 0 0 1 0 2 EIF3M chr11:32615412 3'AG 32615412 Downstream 47bp
chr11 32615458 32615458 1 + G C HNSC 32615454 + 32615434 32615474 41 GTGGAATTGCTCGGAAGTTACACAGAGGACAATGCTTCCCA GTGGAATTGCTCGGAAGTTACACACAGGACAATGCTTCCCA < 41bp 0.828608544898996 0.593527771821184 0.043667257 0.009908825 prediction 0.470161546155624 Functional Loss - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32615454 chr11:32615458 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_71918 0 0 1 0 2 EIF3M chr11:32615495 5'GT 32615495 Upstream 38bp
chr1 172414295 172414295 1 + G A HNSC 172414292 + 172414272 172414312 41 GCCATTAGTGCTCAGCCTTCCCAGAAGGTAACCTCTCAGCC GCCATTAGTGCTCAGCCTTCCCAAAAGGTAACCTCTCAGCC < 41bp 0.735072388541538 0.499322034805443 0.15258074 0.122868925 prediction 0.470144777083076 Functional Loss - C1orf105 ENSG00000180999 CDS Human protein_coding chr1:172414292 chr1:172414295 nonsynonymous SNV 0.919 0 24 hm5C_associated_SNPs_71922 0 0 0 0 2 C1orf105 chr1:172414213 3'AG 172414213 Downstream 83bp
chr1 172414295 172414295 1 + G A HNSC 172414292 + 172414272 172414312 41 GCCATTAGTGCTCAGCCTTCCCAGAAGGTAACCTCTCAGCC GCCATTAGTGCTCAGCCTTCCCAAAAGGTAACCTCTCAGCC < 41bp 0.735072388541538 0.499322034805443 0.15258074 0.122868925 prediction 0.470144777083076 Functional Loss - C1orf105 ENSG00000180999 CDS Human protein_coding chr1:172414292 chr1:172414295 nonsynonymous SNV 0.919 0 24 hm5C_associated_SNPs_71922 0 0 0 0 2 C1orf105 chr1:172414298 5'GT 172414298 Upstream 4bp
chr16 88781082 88781082 1 + C T rs61744519 88781080 + 88781060 88781100 41 CTGACTGAGACCCGGACACCCCCGGGGCCCTGCTGTTCTCC CTGACTGAGACCCGGACACCCCTGGGGCCCTGCTGTTCTCC < 41bp 0.76601395956337 0.530942655400689 0.5473682 0.20824176 prediction 0.470142608325363 Functional Loss - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781080 chr16:88781082 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_71924 0 0 1 0 2 CTU2 chr16:88780995 3'AG 88780995 Downstream 88bp
chr16 88781082 88781082 1 + C T rs61744519 88781080 + 88781060 88781100 41 CTGACTGAGACCCGGACACCCCCGGGGCCCTGCTGTTCTCC CTGACTGAGACCCGGACACCCCTGGGGCCCTGCTGTTCTCC < 41bp 0.76601395956337 0.530942655400689 0.5473682 0.20824176 prediction 0.470142608325363 Functional Loss - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781080 chr16:88781082 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_71924 0 0 1 0 2 CTU2 chr16:88781145 5'GT 88781145 Upstream 64bp
chr10 13151232 13151232 1 + C T UCEC 13151230 + 13151210 13151250 41 CCAAACCTGGACACGTTTACCCCGGAGGAGCTGCTGCAGCA CCAAACCTGGACACGTTTACCCTGGAGGAGCTGCTGCAGCA < 41bp 0.821064252196732 0.585995337341937 0.5590883 0.3972947 prediction 0.470137829709589 Functional Loss - OPTN ENSG00000123240 CDS Human protein_coding chr10:13151230 chr10:13151232 nonsynonymous SNV 0.961 2 23 hm5C_associated_SNPs_71926 0 0 1 0 1 OPTN chr10:13151288 5'GT 13151288 Upstream 57bp
chr12 52369092 52369092 1 + G A COAD 52369089 + 52369069 52369109 41 AGCTGCCTCCAGGCCAACTACACGTGTGAGACAGATGGGGC AGCTGCCTCCAGGCCAACTACACATGTGAGACAGATGGGGC < 41bp 0.759880804259812 0.524814506985845 0.90121996 0.88982487 prediction 0.470132594547933 Functional Loss - ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52369089 chr12:52369092 synonymous SNV . 0 24 hm5C_associated_SNPs_71928 0 0 1 0 1 ACVR1B chr12:52369049 3'AG 52369049 Downstream 44bp
chr10 118368603 118368603 1 + C T BRCA 118368601 + 118368581 118368621 41 GAAGACACAGTGCGGGAAGACACGCTGCTCACCCTCACGCC GAAGACACAGTGCGGGAAGACATGCTGCTCACCCTCACGCC < 41bp 0.786660179414704 0.55159849426148 0.49886703 0.14704919 prediction 0.470123370306448 Functional Loss - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118368601 chr10:118368603 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_71929 0 0 0 0 1 PNLIPRP1 chr10:118368565 3'AG 118368565 Downstream 39bp
chr19 11941183 11941183 1 + G T STAD 11941181 + 11941161 11941201 41 ATTTCCCAGAGGAAACTCTACAGGGAAGTGATGCTGGAAAC ATTTCCCAGAGGAAACTCTACATGGAAGTGATGCTGGAAAC < 41bp 0.891313143143395 0.656258829421046 0.87174463 0.10265681 prediction 0.470108627444699 Functional Loss - ZNF440 ENSG00000171295 CDS Human protein_coding chr19:11941181 chr19:11941183 nonsynonymous SNV 0.818 3 23 hm5C_associated_SNPs_71932 0 0 0 0 2 ZNF440 chr19:11941098 3'AG 11941098 Downstream 86bp
chr19 11941183 11941183 1 + G T STAD 11941181 + 11941161 11941201 41 ATTTCCCAGAGGAAACTCTACAGGGAAGTGATGCTGGAAAC ATTTCCCAGAGGAAACTCTACATGGAAGTGATGCTGGAAAC < 41bp 0.891313143143395 0.656258829421046 0.87174463 0.10265681 prediction 0.470108627444699 Functional Loss - ZNF440 ENSG00000171295 CDS Human protein_coding chr19:11941181 chr19:11941183 nonsynonymous SNV 0.818 3 23 hm5C_associated_SNPs_71932 0 0 0 0 2 ZNF440 chr19:11941224 5'GT 11941224 Upstream 42bp
chr19 58549521 58549521 1 + G T LUSC 58549519 + 58549499 58549539 41 CAGTCACAGGGCCCCCGAAGCTGCAGGGAGGCCGCCAGCCT CAGTCACAGGGCCCCCGAAGCTTCAGGGAGGCCGCCAGCCT < 41bp 0.897349578753747 0.662295714908451 0.38270476 0.22343868 prediction 0.470107727690591 Functional Loss - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58549519 chr19:58549521 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_71933 0 0 0 0 1 ZSCAN1 chr19:58549574 5'GT 58549574 Upstream 54bp
chr3 127323901 127323901 1 + G A TGCT 127323898 + 127323878 127323918 41 GTGGGTGAGCATGGCGGGCCCCCGGCTGGAGATCCACCACC GTGGGTGAGCATGGCGGGCCCCCAGCTGGAGATCCACCACC < 41bp 0.73504694700183 0.482488348686201 0.38215482 0.18463716 prediction 0.47009389400366 Functional Loss - MCM2 ENSG00000073111 CDS Human protein_coding chr3:127323898 chr3:127323901 nonsynonymous SNV 0.557 3 24 hm5C_associated_SNPs_71937 0 0 1 0 1 MCM2 chr3:127323999 5'GT 127323999 Upstream 99bp
chr6 70576470 70576470 1 + G C rs114342313 70576469 + 70576449 70576489 41 CTCGCAGGGAGCTCACTCCTCGGCGGTGCCGCAGCCCTGTC CTCGCAGGGAGCTCACTCCTCCGCGGTGCCGCAGCCCTGTC < 41bp 0.831499977583255 0.596455852817569 0.92114806 0.87958634 prediction 0.470088249531372 Functional Loss - COL19A1 ENSG00000082293 UTR5 Human protein_coding chr6:70576469 chr6:70576470 . . 0 22 hm5C_associated_SNPs_71938 0 0 0 0 1 COL19A1 chr6:70576532 5'GT 70576532 Upstream 63bp
chr4 3419203 3419203 1 + C T SKCM 3419201 + 3419181 3419221 41 AAGCGGAAAGGCGCGTTTTTCTCGTGGTCGCGGACCAGGAG AAGCGGAAAGGCGCGTTTTTCTTGTGGTCGCGGACCAGGAG < 41bp 0.812497584542833 0.577455091845271 0.8491738 0.6112141 prediction 0.470084985395124 Functional Loss - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3419201 chr4:3419203 nonsynonymous SNV 0.362 2 23 hm5C_associated_SNPs_71939 0 0 1 0 2 RGS12 chr4:3419115 3'AG 3419115 Downstream 89bp
chr4 3419203 3419203 1 + C T SKCM 3419201 + 3419181 3419221 41 AAGCGGAAAGGCGCGTTTTTCTCGTGGTCGCGGACCAGGAG AAGCGGAAAGGCGCGTTTTTCTTGTGGTCGCGGACCAGGAG < 41bp 0.812497584542833 0.577455091845271 0.8491738 0.6112141 prediction 0.470084985395124 Functional Loss - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3419201 chr4:3419203 nonsynonymous SNV 0.362 2 23 hm5C_associated_SNPs_71939 0 0 1 0 2 RGS12 chr4:3419268 5'GT 3419268 Upstream 66bp
chr14 32295860 32295860 1 + G T LAML 32295858 + 32295838 32295878 41 CTGTGATTGTCTCCACGCCCCAGGACATCGCATTGATGGAT CTGTGATTGTCTCCACGCCCCATGACATCGCATTGATGGAT < 41bp 0.735041056894472 0.390481705171667 0.24217078 0.00684312 prediction 0.470082113788944 Functional Loss - NUBPL ENSG00000151413 CDS Human protein_coding chr14:32295858 chr14:32295860 nonsynonymous SNV 0.398 3 23 hm5C_associated_SNPs_71940 0 0 1 0 2 NUBPL chr14:32295835 3'AG 32295835 Downstream 26bp
chr14 32295860 32295860 1 + G T LAML 32295858 + 32295838 32295878 41 CTGTGATTGTCTCCACGCCCCAGGACATCGCATTGATGGAT CTGTGATTGTCTCCACGCCCCATGACATCGCATTGATGGAT < 41bp 0.735041056894472 0.390481705171667 0.24217078 0.00684312 prediction 0.470082113788944 Functional Loss - NUBPL ENSG00000151413 CDS Human protein_coding chr14:32295858 chr14:32295860 nonsynonymous SNV 0.398 3 23 hm5C_associated_SNPs_71940 0 0 1 0 2 NUBPL chr14:32295920 5'GT 32295920 Upstream 61bp
chr9 32384649 32384649 1 + A C rs144354424 32384648 + 32384628 32384668 41 GGGGCGGAGCGTGGAGGCGGCAGCTGGAACCGCGCAGCGCA GGGGCGGAGCGTGGAGGCGGCCGCTGGAACCGCGCAGCGCA < 41bp 0.738636743429581 0.503596497881967 0.87990916 0.7849498 prediction 0.470080491095227 Functional Loss - ACO1 ENSG00000122729 UTR5 Human protein_coding chr9:32384648 chr9:32384649 . . 0 22 hm5C_associated_SNPs_71941 0 0 1 0 1 ACO1 chr9:32384733 5'GT 32384733 Upstream 85bp
chr9 127637317 127637317 1 + G A LUSC 127637314 + 127637294 127637334 41 TCAAGAGCAGTGAGATTGAGCAGGCTGTGCAGTCACTGGAC TCAAGAGCAGTGAGATTGAGCAGACTGTGCAGTCACTGGAC < 41bp 0.772504587667733 0.537468574709046 0.69483495 0.15885848 prediction 0.470072025917374 Functional Loss - ARPC5L ENSG00000136950 CDS Human protein_coding chr9:127637314 chr9:127637317 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_71943 0 0 1 0 1 ARPC5L chr9:127637254 3'AG 127637254 Downstream 64bp
chr14 61278708 61278708 1 + C T LUSC 61278706 + 61278686 61278726 41 ATATAAATTTTTGTTTTAGACTCGAGAACAGGAAGAACTGG ATATAAATTTTTGTTTTAGACTTGAGAACAGGAAGAACTGG < 41bp 0.844053213234584 0.60901853726299 0.22592449 0.06042239 prediction 0.470069351943187 Functional Loss - MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61278706 chr14:61278708 stopgain 0.998 1 23 hm5C_associated_SNPs_71945 0 0 1 0 1 MNAT1 chr14:61278705 3'AG 61278705 Downstream 4bp
chr1 90487884 90487884 1 + C T COAD 90487882 + 90487862 90487902 41 AAATAATCCAATAGTGAAGGCGCGATATGAACGTTTTGTTA AAATAATCCAATAGTGAAGGCGTGATATGAACGTTTTGTTA < 41bp 0.735029486045579 0.457021962252615 0.14110044 0.18893519 prediction 0.470058972091158 Functional Loss - ZNF326 ENSG00000162664 CDS Human protein_coding chr1:90487882 chr1:90487884 stopgain 0.975 1 23 hm5C_associated_SNPs_71946 0 0 1 0 2 ZNF326 chr1:90487809 3'AG 90487809 Downstream 76bp
chr1 90487884 90487884 1 + C T COAD 90487882 + 90487862 90487902 41 AAATAATCCAATAGTGAAGGCGCGATATGAACGTTTTGTTA AAATAATCCAATAGTGAAGGCGTGATATGAACGTTTTGTTA < 41bp 0.735029486045579 0.457021962252615 0.14110044 0.18893519 prediction 0.470058972091158 Functional Loss - ZNF326 ENSG00000162664 CDS Human protein_coding chr1:90487882 chr1:90487884 stopgain 0.975 1 23 hm5C_associated_SNPs_71946 0 0 1 0 2 ZNF326 chr1:90487904 5'GT 90487904 Upstream 21bp
chr1 90487886 90487886 1 + A C KIRC 90487882 + 90487862 90487902 41 AAATAATCCAATAGTGAAGGCGCGATATGAACGTTTTGTTA AAATAATCCAATAGTGAAGGCGCGCTATGAACGTTTTGTTA < 41bp 0.735029486045579 0.332801759186201 0.14110044 0.057082236 prediction 0.470058972091158 Functional Loss - ZNF326 ENSG00000162664 CDS Human protein_coding chr1:90487882 chr1:90487886 synonymous SNV . 0 25 hm5C_associated_SNPs_71947 0 0 1 0 2 ZNF326 chr1:90487809 3'AG 90487809 Downstream 78bp
chr1 90487886 90487886 1 + A C KIRC 90487882 + 90487862 90487902 41 AAATAATCCAATAGTGAAGGCGCGATATGAACGTTTTGTTA AAATAATCCAATAGTGAAGGCGCGCTATGAACGTTTTGTTA < 41bp 0.735029486045579 0.332801759186201 0.14110044 0.057082236 prediction 0.470058972091158 Functional Loss - ZNF326 ENSG00000162664 CDS Human protein_coding chr1:90487882 chr1:90487886 synonymous SNV . 0 25 hm5C_associated_SNPs_71947 0 0 1 0 2 ZNF326 chr1:90487904 5'GT 90487904 Upstream 19bp
chr14 69787444 69787444 1 + C T COAD 69787442 + 69787422 69787462 41 TCTCAGGTGACAGGAACTCCCTCGAAAGGCTTTGATGAGAA TCTCAGGTGACAGGAACTCCCTTGAAAGGCTTTGATGAGAA < 41bp 0.856554851109081 0.621528034765826 0.92748463 0.1885201 prediction 0.47005363268651 Functional Loss - GALNT16 ENSG00000100626 CDS Human protein_coding chr14:69787442 chr14:69787444 nonsynonymous SNV 0.969 0 23 hm5C_associated_SNPs_71949 0 0 0 0 1 GALNT16 chr14:69787428 3'AG 69787428 Downstream 17bp
chr5 153792491 153792491 1 + G A GBM 153792488 + 153792468 153792508 41 GGCTGTGTGCAGACACAAAGCACGGGGCCTTGGGCTCCCCA GGCTGTGTGCAGACACAAAGCACAGGGCCTTGGGCTCCCCA < 41bp 0.749443963465809 0.514420860333082 0.8825953 0.5455332 prediction 0.470046206265455 Functional Loss - GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153792488 chr5:153792491 nonsynonymous SNV 0.919 2 24 hm5C_associated_SNPs_71952 0 0 1 0 2 GALNT10 chr5:153792449 3'AG 153792449 Downstream 43bp
chr5 153792491 153792491 1 + G A GBM 153792488 + 153792468 153792508 41 GGCTGTGTGCAGACACAAAGCACGGGGCCTTGGGCTCCCCA GGCTGTGTGCAGACACAAAGCACAGGGCCTTGGGCTCCCCA < 41bp 0.749443963465809 0.514420860333082 0.8825953 0.5455332 prediction 0.470046206265455 Functional Loss - GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153792488 chr5:153792491 nonsynonymous SNV 0.919 2 24 hm5C_associated_SNPs_71952 0 0 1 0 2 GALNT10 chr5:153792565 5'GT 153792565 Upstream 75bp
chr19 41518329 41518329 1 + C T SKCM 41518327 + 41518307 41518347 41 CAGAGATTTTCCGACCTTCTCCCCATGGGTGTGCCCCACAT CAGAGATTTTCCGACCTTCTCCTCATGGGTGTGCCCCACAT < 41bp 0.735020091823538 0.441078016188006 0.22711974 0.12386486 prediction 0.470040183647077 Functional Loss - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41518327 chr19:41518329 nonsynonymous SNV 0.008 4 23 hm5C_associated_SNPs_71954 0 0 0 0 1 CYP2B6 chr19:41518390 5'GT 41518390 Upstream 62bp
chr1 45189912 45189912 1 + C T CESC 45189910 + 45189890 45189930 41 CCAAACTGCAGGCCAAGATCCTCAGTGGTAAGGACCTGCTC CCAAACTGCAGGCCAAGATCCTTAGTGGTAAGGACCTGCTC < 41bp 0.735017095476442 0.466389420912878 0.46080905 0.44783407 prediction 0.470034190952884 Functional Loss - C1orf228 ENSG00000198520 CDS Human protein_coding chr1:45189910 chr1:45189912 synonymous SNV . 0 23 hm5C_associated_SNPs_71955 0 0 0 0 1 C1orf228 chr1:45189916 5'GT 45189916 Upstream 5bp
chr4 47565627 47565627 1 + G A SKCM 47565624 + 47565604 47565644 41 CTGGCATTGAAGACCGTCTGCAGGAGGGAGTCCCTGAATCT CTGGCATTGAAGACCGTCTGCAGAAGGGAGTCCCTGAATCT < 41bp 0.740218603112074 0.505206304127009 0.72756517 0.39433974 prediction 0.47002459797013 Functional Loss - ATP10D ENSG00000145246 CDS Human protein_coding chr4:47565624 chr4:47565627 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_71957 0 0 0 0 1 ATP10D chr4:47565598 3'AG 47565598 Downstream 30bp
chr1 247712508 247712508 1 + C T SKCM 247712506 + 247712486 247712526 41 GTGAAAAGATGGGAAATTATCTCCTGCGAAAACTCAGGTGA GTGAAAAGATGGGAAATTATCTTCTGCGAAAACTCAGGTGA < 41bp 0.73501189788826 0.470605057380147 0.24404854 0.19994813 prediction 0.470023795776521 Functional Loss - GCSAML ENSG00000169224 CDS Human protein_coding chr1:247712506 chr1:247712508 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_71959 0 0 0 1 1 GCSAML chr1:247712522 5'GT 247712522 Upstream 15bp
chr20 20007478 20007478 1 + G T GBM 20007475 + 20007455 20007495 41 CTAGGGAAGAATGGCACGGGCACGTCACAGCTCTGTCTGTT CTAGGGAAGAATGGCACGGGCACTTCACAGCTCTGTCTGTT < 41bp 0.735009602023581 0.340237426875798 0.07473442 0.08810562 prediction 0.470019204047163 Functional Loss - NAA20 ENSG00000173418 CDS Human protein_coding chr20:20007475 chr20:20007478 nonsynonymous SNV 0.952 4 24 hm5C_associated_SNPs_71960 0 0 1 0 2 NAA20 chr20:20007428 3'AG 20007428 Downstream 51bp
chr20 20007478 20007478 1 + G T GBM 20007475 + 20007455 20007495 41 CTAGGGAAGAATGGCACGGGCACGTCACAGCTCTGTCTGTT CTAGGGAAGAATGGCACGGGCACTTCACAGCTCTGTCTGTT < 41bp 0.735009602023581 0.340237426875798 0.07473442 0.08810562 prediction 0.470019204047163 Functional Loss - NAA20 ENSG00000173418 CDS Human protein_coding chr20:20007475 chr20:20007478 nonsynonymous SNV 0.952 4 24 hm5C_associated_SNPs_71960 0 0 1 0 2 NAA20 chr20:20007563 5'GT 20007563 Upstream 86bp
chr2 239025606 239025606 1 + G A SKCM 239025603 + 239025583 239025623 41 CTGCGGGATGAAGATGGTTACACGGCGGCAGACCTGGCGGA CTGCGGGATGAAGATGGTTACACAGCGGCAGACCTGGCGGA < 41bp 0.735001568819652 0.486661709770095 0.7502043 0.2520612 prediction 0.470003137639304 Functional Loss - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239025603 chr2:239025606 synonymous SNV . 0 24 hm5C_associated_SNPs_71962 0 0 0 0 2 ESPNL chr2:239025544 3'AG 239025544 Downstream 63bp
chr2 239025606 239025606 1 + G A SKCM 239025603 + 239025583 239025623 41 CTGCGGGATGAAGATGGTTACACGGCGGCAGACCTGGCGGA CTGCGGGATGAAGATGGTTACACAGCGGCAGACCTGGCGGA < 41bp 0.735001568819652 0.486661709770095 0.7502043 0.2520612 prediction 0.470003137639304 Functional Loss - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239025603 chr2:239025606 synonymous SNV . 0 24 hm5C_associated_SNPs_71962 0 0 0 0 2 ESPNL chr2:239025675 5'GT 239025675 Upstream 70bp
chr3 47446239 47446239 1 + C T rs149197378 47446237 + 47446217 47446257 41 CAGAGTCGGGTCCCCATGGGCTCGGGCCAGGAGGCCGCTGT CAGAGTCGGGTCCCCATGGGCTTGGGCCAGGAGGCCGCTGT < 41bp 0.734999180936202 0.481213703977917 0.33227462 0.34638277 prediction 0.469998361872403 Functional Loss - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47446237 chr3:47446239 nonsynonymous SNV 0.988 0 23 hm5C_associated_SNPs_71964 0 0 1 0 2 PTPN23 chr3:47446142 3'AG 47446142 Downstream 98bp
chr3 47446239 47446239 1 + C T rs149197378 47446237 + 47446217 47446257 41 CAGAGTCGGGTCCCCATGGGCTCGGGCCAGGAGGCCGCTGT CAGAGTCGGGTCCCCATGGGCTTGGGCCAGGAGGCCGCTGT < 41bp 0.734999180936202 0.481213703977917 0.33227462 0.34638277 prediction 0.469998361872403 Functional Loss - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47446237 chr3:47446239 nonsynonymous SNV 0.988 0 23 hm5C_associated_SNPs_71964 0 0 1 0 2 PTPN23 chr3:47446269 5'GT 47446269 Upstream 31bp
chr3 47446240 47446240 1 + G A COAD 47446237 + 47446217 47446257 41 CAGAGTCGGGTCCCCATGGGCTCGGGCCAGGAGGCCGCTGT CAGAGTCGGGTCCCCATGGGCTCAGGCCAGGAGGCCGCTGT < 41bp 0.734999180936202 0.497924519758517 0.33227462 0.22520593 prediction 0.469998361872403 Functional Loss - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47446237 chr3:47446240 synonymous SNV . 0 24 hm5C_associated_SNPs_71965 0 0 1 0 2 PTPN23 chr3:47446142 3'AG 47446142 Downstream 99bp
chr3 47446240 47446240 1 + G A COAD 47446237 + 47446217 47446257 41 CAGAGTCGGGTCCCCATGGGCTCGGGCCAGGAGGCCGCTGT CAGAGTCGGGTCCCCATGGGCTCAGGCCAGGAGGCCGCTGT < 41bp 0.734999180936202 0.497924519758517 0.33227462 0.22520593 prediction 0.469998361872403 Functional Loss - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47446237 chr3:47446240 synonymous SNV . 0 24 hm5C_associated_SNPs_71965 0 0 1 0 2 PTPN23 chr3:47446269 5'GT 47446269 Upstream 30bp
chr6 106960867 106960867 1 + G A SKCM 106960864 + 106960844 106960884 41 GACGCCGACGGCTTGAAGCCCAGGAACCATTTCGGCGTGGG GACGCCGACGGCTTGAAGCCCAGAAACCATTTCGGCGTGGG < 41bp 0.753528417816873 0.518531874303728 0.5092173 0.30358252 prediction 0.46999308702629 Functional Loss - CRYBG1 ENSG00000112297 CDS Human protein_coding chr6:106960864 chr6:106960867 synonymous SNV . 0 24 hm5C_associated_SNPs_71966 0 0 1 0 1 CRYBG1 chr6:106960914 5'GT 106960914 Upstream 48bp
chr20 2315811 2315811 1 + G T OV 2315809 + 2315789 2315829 41 ACGCTCAGTATGAGAAGTACCTGAAGTCAGACAACATGATC ACGCTCAGTATGAGAAGTACCTTAAGTCAGACAACATGATC < 41bp 0.734994879751121 0.387810862496954 0.16893947 0.12921858 prediction 0.469989759502242 Functional Loss - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2315809 chr20:2315811 synonymous SNV . 0 23 hm5C_associated_SNPs_71968 0 0 0 0 1 TGM3 chr20:2315762 3'AG 2315762 Downstream 50bp
chr6 116951627 116951627 1 + C T UCEC 116951625 + 116951605 116951645 41 GAATATACCCCCCTGGACAACACGGTTATCCTCAAATCTCA GAATATACCCCCCTGGACAACATGGTTATCCTCAAATCTCA < 41bp 0.734988954328964 0.466112010445771 0.056945473 0.035892516 prediction 0.469977908657929 Functional Loss - RSPH4A ENSG00000111834 CDS Human protein_coding chr6:116951625 chr6:116951627 nonsynonymous SNV 0.614 3 23 hm5C_associated_SNPs_71970 0 0 0 0 2 RSPH4A chr6:116951598 3'AG 116951598 Downstream 30bp
chr6 116951627 116951627 1 + C T UCEC 116951625 + 116951605 116951645 41 GAATATACCCCCCTGGACAACACGGTTATCCTCAAATCTCA GAATATACCCCCCTGGACAACATGGTTATCCTCAAATCTCA < 41bp 0.734988954328964 0.466112010445771 0.056945473 0.035892516 prediction 0.469977908657929 Functional Loss - RSPH4A ENSG00000111834 CDS Human protein_coding chr6:116951625 chr6:116951627 nonsynonymous SNV 0.614 3 23 hm5C_associated_SNPs_71970 0 0 0 0 2 RSPH4A chr6:116951715 5'GT 116951715 Upstream 89bp
chr19 12920928 12920928 1 + G A COAD 12920925 + 12920905 12920945 41 GATGCCAGAGACATACCAGGCGCGGCTGCAGCAAAGTTTTC GATGCCAGAGACATACCAGGCGCAGCTGCAGCAAAGTTTTC < 41bp 0.738364130571373 0.503375967866749 0.08764115 0.01564315 prediction 0.469976325409248 Functional Loss - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12920925 chr19:12920928 nonsynonymous SNV 0.160 3 24 hm5C_associated_SNPs_71971 0 0 1 0 2 RNASEH2A chr19:12920885 3'AG 12920885 Downstream 44bp
chr19 12920928 12920928 1 + G A COAD 12920925 + 12920905 12920945 41 GATGCCAGAGACATACCAGGCGCGGCTGCAGCAAAGTTTTC GATGCCAGAGACATACCAGGCGCAGCTGCAGCAAAGTTTTC < 41bp 0.738364130571373 0.503375967866749 0.08764115 0.01564315 prediction 0.469976325409248 Functional Loss - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12920925 chr19:12920928 nonsynonymous SNV 0.160 3 24 hm5C_associated_SNPs_71971 0 0 1 0 2 RNASEH2A chr19:12921022 5'GT 12921022 Upstream 95bp
chr11 33680366 33680366 1 + G A CESC 33680363 + 33680343 33680383 41 GGCCCGAGCCGGCCCAGCTGCACGACAGCGCCTCCTTCACG GGCCCGAGCCGGCCCAGCTGCACAACAGCGCCTCCTTCACG < 41bp 0.75793381824101 0.522947438676529 0.27688843 0.3774706 prediction 0.469972759128963 Functional Loss - KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33680363 chr11:33680366 nonsynonymous SNV 0.603 2 24 hm5C_associated_SNPs_71972 0 0 0 0 2 KIAA1549L chr11:33680296 3'AG 33680296 Downstream 71bp
chr11 33680366 33680366 1 + G A CESC 33680363 + 33680343 33680383 41 GGCCCGAGCCGGCCCAGCTGCACGACAGCGCCTCCTTCACG GGCCCGAGCCGGCCCAGCTGCACAACAGCGCCTCCTTCACG < 41bp 0.75793381824101 0.522947438676529 0.27688843 0.3774706 prediction 0.469972759128963 Functional Loss - KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33680363 chr11:33680366 nonsynonymous SNV 0.603 2 24 hm5C_associated_SNPs_71972 0 0 0 0 2 KIAA1549L chr11:33680444 5'GT 33680444 Upstream 79bp
chr19 45851278 45851278 1 + C T UCEC 45851276 + 45851256 45851296 41 GCCTTCGGACCCTGCATAACCTCGTGATCCAGTACGCGGGG GCCTTCGGACCCTGCATAACCTTGTGATCCAGTACGCGGGG < 41bp 0.821389859417322 0.586411297396243 0.15777788 0.08144823 prediction 0.469957124042158 Functional Loss - KLC3 ENSG00000104892 CDS Human protein_coding chr19:45851276 chr19:45851278 synonymous SNV . 0 23 hm5C_associated_SNPs_71978 0 0 0 0 1 KLC3 chr19:45851199 3'AG 45851199 Downstream 80bp
chr1 45189817 45189817 1 + G A rs75696348 45189814 + 45189794 45189834 41 CCATCGAGTTGATCAAAGACCTGGTCGGTTACGATGTGCGC CCATCGAGTTGATCAAAGACCTGATCGGTTACGATGTGCGC < 41bp 0.759211767907635 0.524234112461254 0.4752351 0.30087358 prediction 0.469955310892761 Functional Loss - C1orf228 ENSG00000198520 CDS Human protein_coding chr1:45189814 chr1:45189817 nonsynonymous SNV 0.543 0 24 hm5C_associated_SNPs_71981 0 0 0 0 2 C1orf228 chr1:45189794 3'AG 45189794 Downstream 24bp
chr1 45189817 45189817 1 + G A rs75696348 45189814 + 45189794 45189834 41 CCATCGAGTTGATCAAAGACCTGGTCGGTTACGATGTGCGC CCATCGAGTTGATCAAAGACCTGATCGGTTACGATGTGCGC < 41bp 0.759211767907635 0.524234112461254 0.4752351 0.30087358 prediction 0.469955310892761 Functional Loss - C1orf228 ENSG00000198520 CDS Human protein_coding chr1:45189814 chr1:45189817 nonsynonymous SNV 0.543 0 24 hm5C_associated_SNPs_71981 0 0 0 0 2 C1orf228 chr1:45189916 5'GT 45189916 Upstream 100bp
chr16 66613777 66613777 1 + G C ESCA 66613773 + 66613753 66613793 41 GTTCTGGCTCTTGGGGCACGCTGAGATCAAGATTCGGAGTT GTTCTGGCTCTTGGGGCACGCTGACATCAAGATTCGGAGTT < 41bp 0.734975592505689 0.432698232011987 0.2396273 0.13664734 prediction 0.469951185011377 Functional Loss - CMTM2 ENSG00000140932 CDS Human protein_coding chr16:66613773 chr16:66613777 nonsynonymous SNV 0.014 1 25 hm5C_associated_SNPs_71983 0 0 0 0 1 CMTM2 chr16:66613795 5'GT 66613795 Upstream 19bp
chr1 179599985 179599985 1 + C T rs12126190 179599983 + 179599963 179600003 41 TTGGAGCTCTTAGTGACATTCTCCATGTTGAGTTCAGGAAA TTGGAGCTCTTAGTGACATTCTTCATGTTGAGTTCAGGAAA < 41bp 0.734975282315073 0.418791117841908 0.9572421 0.10356611 prediction 0.469950564630145 Functional Loss - TDRD5 ENSG00000162782 CDS Human protein_coding chr1:179599983 chr1:179599985 synonymous SNV . 0 23 hm5C_associated_SNPs_71984 0 0 0 0 2 TDRD5 chr1:179599902 3'AG 179599902 Downstream 84bp
chr1 179599985 179599985 1 + C T rs12126190 179599983 + 179599963 179600003 41 TTGGAGCTCTTAGTGACATTCTCCATGTTGAGTTCAGGAAA TTGGAGCTCTTAGTGACATTCTTCATGTTGAGTTCAGGAAA < 41bp 0.734975282315073 0.418791117841908 0.9572421 0.10356611 prediction 0.469950564630145 Functional Loss - TDRD5 ENSG00000162782 CDS Human protein_coding chr1:179599983 chr1:179599985 synonymous SNV . 0 23 hm5C_associated_SNPs_71984 0 0 0 0 2 TDRD5 chr1:179600055 5'GT 179600055 Upstream 71bp
chr3 183885731 183885731 1 + C T CESC 183885729 + 183885709 183885749 41 TACCACAATGTGGAAGGCTTCACGGACCGGAGGGAGGCCCG TACCACAATGTGGAAGGCTTCATGGACCGGAGGGAGGCCCG < 41bp 0.824134991762949 0.589159818175566 0.24638093 0.16009283 prediction 0.469950347174767 Functional Loss - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183885729 chr3:183885731 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_71985 0 0 1 0 1 DVL3 chr3:183885686 3'AG 183885686 Downstream 46bp
chr12 2930444 2930444 1 + C T UCEC 2930442 + 2930422 2930462 41 GCACAGGGAGACCCCAGCTGCCCGAGACGTGGTGCTGCACC GCACAGGGAGACCCCAGCTGCCTGAGACGTGGTGCTGCACC < 41bp 0.734973959017056 0.450654511418865 0.09262091 0.13896796 prediction 0.469947918034111 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2930442 chr12:2930444 stopgain 0.985 1 23 hm5C_associated_SNPs_71986 0 0 1 3 2 ITFG2 chr12:2930428 3'AG 2930428 Downstream 17bp
chr12 2930444 2930444 1 + C T UCEC 2930442 + 2930422 2930462 41 GCACAGGGAGACCCCAGCTGCCCGAGACGTGGTGCTGCACC GCACAGGGAGACCCCAGCTGCCTGAGACGTGGTGCTGCACC < 41bp 0.734973959017056 0.450654511418865 0.09262091 0.13896796 prediction 0.469947918034111 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2930442 chr12:2930444 stopgain 0.985 1 23 hm5C_associated_SNPs_71986 0 0 1 3 2 ITFG2 chr12:2930525 5'GT 2930525 Upstream 82bp
chr1 165859500 165859500 1 + G T UCEC 165859497 + 165859477 165859517 41 CAGAATGAGGTGGACTATCGCCAGAAGCAGGTGGTCATCCT CAGAATGAGGTGGACTATCGCCATAAGCAGGTGGTCATCCT < 41bp 0.734970967829656 0.341054131231803 0.9283216 0.9185424 prediction 0.469941935659312 Functional Loss - UCK2 ENSG00000143179 CDS Human protein_coding chr1:165859497 chr1:165859500 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_71990 0 0 1 0 1 UCK2 chr1:165859441 3'AG 165859441 Downstream 60bp
chr17 19445795 19445795 1 + G A LUSC 19445792 + 19445772 19445812 41 AAGCTGGAGCTGGATGCAGTCACGCTGGCAATCGCGGTACG AAGCTGGAGCTGGATGCAGTCACACTGGCAATCGCGGTACG < 41bp 0.734970648045107 0.495872673919606 0.41152903 0.4068179 prediction 0.469941296090213 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19445792 chr17:19445795 synonymous SNV . 0 24 hm5C_associated_SNPs_71991 0 0 1 1 2 SLC47A1 chr17:19445706 3'AG 19445706 Downstream 90bp
chr17 19445795 19445795 1 + G A LUSC 19445792 + 19445772 19445812 41 AAGCTGGAGCTGGATGCAGTCACGCTGGCAATCGCGGTACG AAGCTGGAGCTGGATGCAGTCACACTGGCAATCGCGGTACG < 41bp 0.734970648045107 0.495872673919606 0.41152903 0.4068179 prediction 0.469941296090213 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19445792 chr17:19445795 synonymous SNV . 0 24 hm5C_associated_SNPs_71991 0 0 1 1 2 SLC47A1 chr17:19445807 5'GT 19445807 Upstream 13bp
chr19 45297479 45297479 1 + C T rs116023028 45297477 + 45297457 45297497 41 CCAGGTGCCCCTTTCGGCTCCTCCATTGCCCCCACGGCCAG CCAGGTGCCCCTTTCGGCTCCTTCATTGCCCCCACGGCCAG < 41bp 0.818237732087558 0.583267682902498 0.9508449 0.07291776 prediction 0.469940098370119 Functional Loss - CBLC ENSG00000142273 CDS Human protein_coding chr19:45297477 chr19:45297479 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_71992 0 0 0 0 2 CBLC chr19:45297461 3'AG 45297461 Downstream 19bp
chr19 45297479 45297479 1 + C T rs116023028 45297477 + 45297457 45297497 41 CCAGGTGCCCCTTTCGGCTCCTCCATTGCCCCCACGGCCAG CCAGGTGCCCCTTTCGGCTCCTTCATTGCCCCCACGGCCAG < 41bp 0.818237732087558 0.583267682902498 0.9508449 0.07291776 prediction 0.469940098370119 Functional Loss - CBLC ENSG00000142273 CDS Human protein_coding chr19:45297477 chr19:45297479 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_71992 0 0 0 0 2 CBLC chr19:45297538 5'GT 45297538 Upstream 60bp
chr8 56863296 56863296 1 + G A SKCM 56863293 + 56863273 56863313 41 AGAAAGGCAGCTTTTGGCACCAGGAAATAGCGCTGGAGCTT AGAAAGGCAGCTTTTGGCACCAGAAAATAGCGCTGGAGCTT < 41bp 0.734965539105097 0.498943894065418 0.5160777 0.28721857 prediction 0.469931078210194 Functional Loss - LYN ENSG00000254087 CDS Human protein_coding chr8:56863293 chr8:56863296 nonsynonymous SNV 0.819 1 24 hm5C_associated_SNPs_71993 0 0 1 0 2 LYN chr8:56863240 3'AG 56863240 Downstream 57bp
chr8 56863296 56863296 1 + G A SKCM 56863293 + 56863273 56863313 41 AGAAAGGCAGCTTTTGGCACCAGGAAATAGCGCTGGAGCTT AGAAAGGCAGCTTTTGGCACCAGAAAATAGCGCTGGAGCTT < 41bp 0.734965539105097 0.498943894065418 0.5160777 0.28721857 prediction 0.469931078210194 Functional Loss - LYN ENSG00000254087 CDS Human protein_coding chr8:56863293 chr8:56863296 nonsynonymous SNV 0.819 1 24 hm5C_associated_SNPs_71993 0 0 1 0 2 LYN chr8:56863343 5'GT 56863343 Upstream 48bp
chr1 247607422 247607422 1 + G A COAD 247607419 + 247607399 247607439 41 TCTGTGAGGGACTCTTGCACCCCGACTGCAAGCTTCAGGTG TCTGTGAGGGACTCTTGCACCCCAACTGCAAGCTTCAGGTG < 41bp 0.758567347673331 0.52360415027097 0.07725906 0.11737314 prediction 0.469926394804721 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247607419 chr1:247607422 nonsynonymous SNV 0.152 0 24 hm5C_associated_SNPs_71995 0 0 0 0 1 NLRP3 chr1:247607444 5'GT 247607444 Upstream 23bp
chr17 1939269 1939269 1 + C T TGCT 1939267 + 1939247 1939287 41 CGCCCCTGTGCCCGCAGGTTCACGGAGGCCGAAGTGATGGT CGCCCCTGTGCCCGCAGGTTCATGGAGGCCGAAGTGATGGT < 41bp 0.757205444594721 0.522246259845925 0.62018716 0.6653413 prediction 0.46991836949759 Functional Loss - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1939267 chr17:1939269 nonsynonymous SNV 0.946 4 23 hm5C_associated_SNPs_71996 0 0 1 0 1 DPH1 chr17:1939264 3'AG 1939264 Downstream 6bp
chr7 56119593 56119593 1 + G T SARC 56119590 + 56119570 56119610 41 AGGCCGAGGTGGCCCGAGCGCAGGCGGCGCTGGCGGTCAAC AGGCCGAGGTGGCCCGAGCGCAGTCGGCGCTGGCGGTCAAC < 41bp 0.923640485987325 0.688681695490308 0.8980102 0.8280127 prediction 0.469917580994035 Functional Loss - CCT6A ENSG00000146731 CDS Human protein_coding chr7:56119590 chr7:56119593 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_71998 0 0 1 0 1 CCT6A chr7:56119678 5'GT 56119678 Upstream 86bp
chr22 29442814 29442814 1 + C T BLCA 29442812 + 29442792 29442832 41 GCTGTGGGGCCCTGGACACACTCAGCAGCAGCTCCACGTCC GCTGTGGGGCCCTGGACACACTTAGCAGCAGCTCCACGTCC < 41bp 0.734948901816233 0.453009376376446 0.029615074 0.08491227 prediction 0.469897803632466 Functional Loss - ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29442812 chr22:29442814 synonymous SNV . 0 23 hm5C_associated_SNPs_72000 0 0 1 0 1 ZNRF3 chr22:29442871 5'GT 29442871 Upstream 58bp
chr11 63721885 63721885 1 + G A rs374740879 63721882 + 63721862 63721902 41 TGCTCCTATGAGATCCTGAGCCGGAGGACCAAGTTTGGGGA TGCTCCTATGAGATCCTGAGCCGAAGGACCAAGTTTGGGGA < 41bp 0.734937750952998 0.498687740053417 0.87320316 0.31297967 prediction 0.469875501905997 Functional Loss - NAA40 ENSG00000110583 CDS Human protein_coding chr11:63721882 chr11:63721885 synonymous SNV . 0 24 hm5C_associated_SNPs_72004 0 0 1 2 1 NAA40 chr11:63721810 3'AG 63721810 Downstream 76bp
chr7 24324917 24324917 1 + G A SARC 24324914 + 24324894 24324934 41 TGACCCTCGCCCTGTCCCTGCTCGTGTGCCTGGGTGCGCTG TGACCCTCGCCCTGTCCCTGCTCATGTGCCTGGGTGCGCTG < 41bp 0.757730750662049 0.522794202269915 0.31372052 0.23088992 prediction 0.469873096784268 Functional Loss - NPY ENSG00000122585 CDS Human protein_coding chr7:24324914 chr7:24324917 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_72005 0 0 0 0 1 NPY chr7:24324860 3'AG 24324860 Downstream 58bp
chr2 135621154 135621154 1 + G A LUSC 135621151 + 135621131 135621171 41 CCGGGGTCCAAATTGGCACCCACGTCAACGAGTGGGACCTG CCGGGGTCCAAATTGGCACCCACATCAACGAGTGGGACCTG < 41bp 0.751433446873251 0.516499660860661 0.067471474 0.033708066 prediction 0.46986757202518 Functional Loss - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135621151 chr2:135621154 nonsynonymous SNV 0.954 0 24 hm5C_associated_SNPs_72006 0 0 0 0 1 ACMSD chr2:135621201 5'GT 135621201 Upstream 48bp
chr17 4925485 4925485 1 + G A UCEC 4925482 + 4925462 4925502 41 CGGGAGCAGCTGCCGCCCACCACGGTCCAGACCATTGTCAA CGGGAGCAGCTGCCGCCCACCACAGTCCAGACCATTGTCAA < 41bp 0.734932803681393 0.497626953825415 0.13186023 0.19883701 prediction 0.469865607362785 Functional Loss - KIF1C ENSG00000129250 CDS Human protein_coding chr17:4925482 chr17:4925485 synonymous SNV . 0 24 hm5C_associated_SNPs_72007 0 0 1 0 1 KIF1C chr17:4925387 3'AG 4925387 Downstream 99bp
chr4 154197243 154197243 1 + T C COAD 154197242 + 154197222 154197262 41 GGAGACAGTCACTGCTGTGGCTGCGGGAAAGCCTCTCTCTT GGAGACAGTCACTGCTGTGGCCGCGGGAAAGCCTCTCTCTT < 41bp 0.734931077276493 0.494878097676181 0.21709687 0.49122465 prediction 0.469862154552986 Functional Loss - TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154197242 chr4:154197243 synonymous SNV . 0 22 hm5C_associated_SNPs_72008 0 0 0 0 1 TRIM2 chr4:154197282 5'GT 154197282 Upstream 40bp
chr8 95655623 95655623 1 + G T LUSC 95655621 + 95655601 95655641 41 AGCTTCATGTCAGGCAAATCCTGCATCCTGAGGCTTCCAAG AGCTTCATGTCAGGCAAATCCTTCATCCTGAGGCTTCCAAG < 41bp 0.890210747403848 0.655280395213762 0.34360367 0.11962488 prediction 0.469860704380173 Functional Loss - ESRP1 ENSG00000104413 CDS Human protein_coding chr8:95655621 chr8:95655623 synonymous SNV . 0 23 hm5C_associated_SNPs_72009 0 0 1 0 2 ESRP1 chr8:95655531 3'AG 95655531 Downstream 93bp
chr8 95655623 95655623 1 + G T LUSC 95655621 + 95655601 95655641 41 AGCTTCATGTCAGGCAAATCCTGCATCCTGAGGCTTCCAAG AGCTTCATGTCAGGCAAATCCTTCATCCTGAGGCTTCCAAG < 41bp 0.890210747403848 0.655280395213762 0.34360367 0.11962488 prediction 0.469860704380173 Functional Loss - ESRP1 ENSG00000104413 CDS Human protein_coding chr8:95655621 chr8:95655623 synonymous SNV . 0 23 hm5C_associated_SNPs_72009 0 0 1 0 2 ESRP1 chr8:95655644 5'GT 95655644 Upstream 22bp
chrX 153667407 153667407 1 + G A COAD 153667404 + 153667384 153667424 41 GTGACTCGCTACCTGGACTTCAAGGTGGTGGAGGGCAGCTT GTGACTCGCTACCTGGACTTCAAAGTGGTGGAGGGCAGCTT < 41bp 0.75327820750277 0.518356971425902 0.81413686 0.6935891 prediction 0.469842472153736 Functional Loss - GDI1 ENSG00000203879 CDS Human protein_coding chrX:153667404 chrX:153667407 synonymous SNV . 0 24 hm5C_associated_SNPs_72013 1 0 1 0 2 GDI1 chrX:153667352 3'AG 153667352 Downstream 56bp
chrX 153667407 153667407 1 + G A COAD 153667404 + 153667384 153667424 41 GTGACTCGCTACCTGGACTTCAAGGTGGTGGAGGGCAGCTT GTGACTCGCTACCTGGACTTCAAAGTGGTGGAGGGCAGCTT < 41bp 0.75327820750277 0.518356971425902 0.81413686 0.6935891 prediction 0.469842472153736 Functional Loss - GDI1 ENSG00000203879 CDS Human protein_coding chrX:153667404 chrX:153667407 synonymous SNV . 0 24 hm5C_associated_SNPs_72013 1 0 1 0 2 GDI1 chrX:153667486 5'GT 153667486 Upstream 80bp
chr19 49920424 49920424 1 + G A COAD 49920421 + 49920401 49920441 41 CCTTCACCCCAGCAGACCTGCGCGGCGGGAACTCCAGCAAG CCTTCACCCCAGCAGACCTGCGCAGCGGGAACTCCAGCAAG < 41bp 0.761286316338519 0.526366699606029 0.4176392 0.124301285 prediction 0.46983923346498 Functional Loss - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49920421 chr19:49920424 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_72014 0 0 0 0 2 CCDC155 chr19:49920416 3'AG 49920416 Downstream 9bp
chr19 49920424 49920424 1 + G A COAD 49920421 + 49920401 49920441 41 CCTTCACCCCAGCAGACCTGCGCGGCGGGAACTCCAGCAAG CCTTCACCCCAGCAGACCTGCGCAGCGGGAACTCCAGCAAG < 41bp 0.761286316338519 0.526366699606029 0.4176392 0.124301285 prediction 0.46983923346498 Functional Loss - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49920421 chr19:49920424 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_72014 0 0 0 0 2 CCDC155 chr19:49920523 5'GT 49920523 Upstream 100bp
chr12 110019342 110019342 1 + G C PRAD 110019338 + 110019318 110019358 41 ATCCCAAACCCGCTGAAGGACGGGGATTGCGTCAACAGGTA ATCCCAAACCCGCTGAAGGACGGGCATTGCGTCAACAGGTA < 41bp 0.856670262472416 0.621750974537816 0.8492748 0.34052733 prediction 0.4698385758692 Functional Loss - MVK ENSG00000110921 CDS Human protein_coding chr12:110019338 chr12:110019342 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_72015 0 0 1 0 1 MVK chr12:110019355 5'GT 110019355 Upstream 14bp
chr12 52115610 52115610 1 + G C LUAD 52115609 + 52115589 52115629 41 GCCTGCGGCGCAGCGTGAAGCGCAACAGCACGGTGGACTGC GCCTGCGGCGCAGCGTGAAGCCCAACAGCACGGTGGACTGC < 41bp 0.73491815863216 0.423722573629732 0.35484385 0.8533182 prediction 0.46983631726432 Functional Loss - SCN8A ENSG00000196876 CDS Human protein_coding chr12:52115609 chr12:52115610 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_72016 0 0 0 0 1 SCN8A chr12:52115692 5'GT 52115692 Upstream 83bp
chr1 32669914 32669914 1 + T C UCEC 32669913 + 32669893 32669933 41 AGAGGAAGAGGATGGGGTCACTGAGGGGCTGCCAGAGGAGC AGAGGAAGAGGATGGGGTCACCGAGGGGCTGCCAGAGGAGC < 41bp 0.763591700034768 0.528675402266182 0.76778984 0.786132 prediction 0.469832595537171 Functional Loss - CCDC28B ENSG00000160050 CDS Human protein_coding chr1:32669913 chr1:32669914 synonymous SNV . 0 22 hm5C_associated_SNPs_72017 0 0 1 0 1 CCDC28B chr1:32669980 5'GT 32669980 Upstream 67bp
chr19 49507654 49507654 1 + G T UCEC 49507652 + 49507632 49507672 41 TATTGCTGGCCAGCCGGGCACGGGGAAGACGGCCATCGCCA TATTGCTGGCCAGCCGGGCACGTGGAAGACGGCCATCGCCA < 41bp 0.906076126630417 0.6711693142477 0.9042694 0.498905 prediction 0.469813624765434 Functional Loss - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49507652 chr19:49507654 nonsynonymous SNV 0.221 3 23 hm5C_associated_SNPs_72022 0 0 1 0 1 RUVBL2 chr19:49507675 5'GT 49507675 Upstream 22bp
chr17 4798393 4798393 1 + C T COAD 4798391 + 4798371 4798411 41 CCTAGTGGGTGGAGAGGGCACTCGGCTCGACCAGCTGCAGT CCTAGTGGGTGGAGAGGGCACTTGGCTCGACCAGCTGCAGT < 41bp 0.734906486906534 0.472276785581528 0.35910726 0.44507372 prediction 0.469812973813067 Functional Loss - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4798391 chr17:4798393 nonsynonymous SNV 0.547 4 23 hm5C_associated_SNPs_72023 0 0 0 0 1 MINK1 chr17:4798370 3'AG 4798370 Downstream 24bp
chr13 113783916 113783916 1 + G T SARC 113783914 + 113783894 113783934 41 GCCCGCGAGGTCTTTGAGGACAGCGACAAGACGGTAAGGGC GCCCGCGAGGTCTTTGAGGACATCGACAAGACGGTAAGGGC < 41bp 0.734893405069129 0.375895688901035 0.64087385 0.4160476 prediction 0.469786810138259 Functional Loss - F10 ENSG00000126218 CDS Human protein_coding chr13:113783914 chr13:113783916 nonsynonymous SNV 0.014 1 23 hm5C_associated_SNPs_72030 0 0 1 0 1 F10 chr13:113783926 5'GT 113783926 Upstream 11bp
chr1 175054572 175054572 1 + G A UCEC 175054569 + 175054549 175054589 41 CCGGGGACTGAGTATAAGATCACGGTGGTGCCCATGAGAGG CCGGGGACTGAGTATAAGATCACAGTGGTGCCCATGAGAGG < 41bp 0.797224389008912 0.562336294897714 0.46582925 0.32192093 prediction 0.469776188222396 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175054569 chr1:175054572 synonymous SNV . 0 24 hm5C_associated_SNPs_72034 0 0 0 0 2 TNN chr1:175054541 3'AG 175054541 Downstream 32bp
chr1 175054572 175054572 1 + G A UCEC 175054569 + 175054549 175054589 41 CCGGGGACTGAGTATAAGATCACGGTGGTGCCCATGAGAGG CCGGGGACTGAGTATAAGATCACAGTGGTGCCCATGAGAGG < 41bp 0.797224389008912 0.562336294897714 0.46582925 0.32192093 prediction 0.469776188222396 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175054569 chr1:175054572 synonymous SNV . 0 24 hm5C_associated_SNPs_72034 0 0 0 0 2 TNN chr1:175054630 5'GT 175054630 Upstream 59bp
chr5 38427339 38427339 1 + G A HNSC 38427336 + 38427316 38427356 41 GTTCCGCTTTGACTGTGGCTCTGGGACCGGTGTCCTCAGGT GTTCCGCTTTGACTGTGGCTCTGAGACCGGTGTCCTCAGGT < 41bp 0.738410760976675 0.503525109622218 0.85525393 0.45084748 prediction 0.469771302708913 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38427336 chr5:38427339 nonsynonymous SNV 0.924 3 24 hm5C_associated_SNPs_72035 0 0 0 0 1 EGFLAM chr5:38427354 5'GT 38427354 Upstream 16bp
chr19 47870327 47870327 1 + C T SKCM 47870325 + 47870305 47870345 41 TGGAAACCGCCATCCTCTACCTCCGGGACCAGGGGGCCCTG TGGAAACCGCCATCCTCTACCTTCGGGACCAGGGGGCCCTG < 41bp 0.841997281928564 0.607121286589024 0.23020098 0.08693841 prediction 0.46975199067908 Functional Loss - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47870325 chr19:47870327 synonymous SNV . 0 23 hm5C_associated_SNPs_72039 0 0 0 0 2 DHX34 chr19:47870238 3'AG 47870238 Downstream 90bp
chr19 47870327 47870327 1 + C T SKCM 47870325 + 47870305 47870345 41 TGGAAACCGCCATCCTCTACCTCCGGGACCAGGGGGCCCTG TGGAAACCGCCATCCTCTACCTTCGGGACCAGGGGGCCCTG < 41bp 0.841997281928564 0.607121286589024 0.23020098 0.08693841 prediction 0.46975199067908 Functional Loss - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47870325 chr19:47870327 synonymous SNV . 0 23 hm5C_associated_SNPs_72039 0 0 0 0 2 DHX34 chr19:47870412 5'GT 47870412 Upstream 86bp
chrX 54839433 54839433 1 + A C SARC 54839432 + 54839412 54839452 41 GTGCTTCTTAGCATCATCTTCATGAATGGAAATCGGTCCAG GTGCTTCTTAGCATCATCTTCCTGAATGGAAATCGGTCCAG < 41bp 0.802177302612335 0.567305381425515 0.10923582 0.093830466 prediction 0.469743842373639 Functional Loss - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54839432 chrX:54839433 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_72041 0 0 1 0 1 MAGED2 chrX:54839378 3'AG 54839378 Downstream 56bp
chr1 207241638 207241638 1 + T C LUSC 207241637 + 207241617 207241657 41 CCTATGAGCAGTGGAAGATTCTGAATGAGATTGATGCTGTG CCTATGAGCAGTGGAAGATTCCGAATGAGATTGATGCTGTG < 41bp 0.768387941818544 0.533518222518588 0.6270625 0.3537282 prediction 0.469739438599911 Functional Loss - PFKFB2 ENSG00000123836 CDS Human protein_coding chr1:207241637 chr1:207241638 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_72042 0 0 1 0 1 PFKFB2 chr1:207241654 5'GT 207241654 Upstream 17bp
chr19 2989616 2989616 1 + G T LUAD 2989613 + 2989593 2989633 41 GGTGGCTACAACCTGGCCAGCGTGAGCGTGTGGGACCTGGC GGTGGCTACAACCTGGCCAGCGTTAGCGTGTGGGACCTGGC < 41bp 0.734861989619591 0.327790203323298 0.36758056 0.23116961 prediction 0.469723979239182 Functional Loss - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2989613 chr19:2989616 synonymous SNV . 0 24 hm5C_associated_SNPs_72044 0 0 0 0 1 TLE6 chr19:2989533 3'AG 2989533 Downstream 84bp
chr18 28711727 28711727 1 - C A LUSC 28711730 - 28711710 28711750 41 CTGTTGGTACTGTTGGTGGCCAGGGAATCAAAACACAGCAA CTGTTGGTACTGTTGGTGGCCAGTGAATCAAAACACAGCAA < 41bp 0.734856600305704 0.343372577926573 0.8802365 0.22801057 prediction 0.469713200611408 Functional Loss - DSC1 ENSG00000134765 CDS Human protein_coding chr18:28711730 chr18:28711727 stopgain 0.999 1 24 hm5C_associated_SNPs_72046 0 0 0 0 1 DSC1 chr18:28711805 3'AG 28711805 Downstream 79bp
chr16 1128891 1128891 1 + C T SKCM 1128889 + 1128869 1128909 41 ATGGAGCCCCTGTTCCCAGCCTCCACGCCCAGCTGGAACGC ATGGAGCCCCTGTTCCCAGCCTTCACGCCCAGCTGGAACGC < 41bp 0.746682462565702 0.51182663334046 0.93749624 0.041992575 prediction 0.469711658450485 Functional Loss - SSTR5 ENSG00000162009 CDS Human protein_coding chr16:1128889 chr16:1128891 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_72047 0 0 0 0 1 SSTR5 chr16:1128842 3'AG 1128842 Downstream 50bp
chr14 45628452 45628452 1 + C T UCEC 45628450 + 45628430 45628470 41 GGCCATGCCTCAGGGAAAAGCACGAAGGGTTTTACCCAGAA GGCCATGCCTCAGGGAAAAGCATGAAGGGTTTTACCCAGAA < 41bp 0.826770577538294 0.591917894713493 0.13985512 0.12630585 prediction 0.469705365649602 Functional Loss - FANCM ENSG00000187790 CDS Human protein_coding chr14:45628450 chr14:45628452 nonsynonymous SNV 0.989 0 23 hm5C_associated_SNPs_72048 0 0 0 0 1 FANCM chr14:45628483 5'GT 45628483 Upstream 32bp
chr11 69062863 69062863 1 + G A SKCM 69062860 + 69062840 69062880 41 GTCACATACACCCCAGCTCTCCCGATAGGTCTCTGCACTCG GTCACATACACCCCAGCTCTCCCAATAGGTCTCTGCACTCG < 41bp 0.758574501660989 0.523724132907016 0.21117303 0.26598287 prediction 0.469700737507947 Functional Loss - MYEOV ENSG00000172927 CDS Human protein_coding chr11:69062860 chr11:69062863 synonymous SNV . 0 24 hm5C_associated_SNPs_72049 0 0 0 0 2 MYEOV chr11:69062794 3'AG 69062794 Downstream 70bp
chr11 69062863 69062863 1 + G A SKCM 69062860 + 69062840 69062880 41 GTCACATACACCCCAGCTCTCCCGATAGGTCTCTGCACTCG GTCACATACACCCCAGCTCTCCCAATAGGTCTCTGCACTCG < 41bp 0.758574501660989 0.523724132907016 0.21117303 0.26598287 prediction 0.469700737507947 Functional Loss - MYEOV ENSG00000172927 CDS Human protein_coding chr11:69062860 chr11:69062863 synonymous SNV . 0 24 hm5C_associated_SNPs_72049 0 0 0 0 2 MYEOV chr11:69062962 5'GT 69062962 Upstream 100bp
chr9 131285047 131285047 1 + T C UCEC 131285046 + 131285026 131285066 41 GGTTTGATGAATGGAAGGAACTGAAGCAGCATAAAGAATTC GGTTTGATGAATGGAAGGAACCGAAGCAGCATAAAGAATTC < 41bp 0.734848020389719 0.486562945865446 0.34050086 0.2344639 prediction 0.469696040779438 Functional Loss - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131285046 chr9:131285047 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_72050 0 0 1 0 1 GLE1 chr9:131285095 5'GT 131285095 Upstream 49bp
chr4 177069435 177069435 1 + C T UCEC 177069433 + 177069413 177069453 41 TACTATAAAAGTATGGGACACTCGAGAAGGAACTTGTGTGG TACTATAAAAGTATGGGACACTTGAGAAGGAACTTGTGTGG < 41bp 0.734845950860022 0.442255072679663 0.34688848 0.12562853 prediction 0.469691901720043 Functional Loss - WDR17 ENSG00000150627 CDS Human protein_coding chr4:177069433 chr4:177069435 stopgain 0.993 1 23 hm5C_associated_SNPs_72051 0 0 1 0 1 WDR17 chr4:177069486 5'GT 177069486 Upstream 52bp
chr6 35210479 35210479 1 + G T HNSC 35210476 + 35210456 35210496 41 CTCGGAAGGGCAAGGGCCGACGGGCCCGGACCCCTCCAGGC CTCGGAAGGGCAAGGGCCGACGGTCCCGGACCCCTCCAGGC < 41bp 0.734844457169961 0.332504753899386 0.48532248 0.22159699 prediction 0.469688914339923 Functional Loss - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35210476 chr6:35210479 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_72052 0 0 0 0 2 SCUBE3 chr6:35210399 3'AG 35210399 Downstream 81bp
chr6 35210479 35210479 1 + G T HNSC 35210476 + 35210456 35210496 41 CTCGGAAGGGCAAGGGCCGACGGGCCCGGACCCCTCCAGGC CTCGGAAGGGCAAGGGCCGACGGTCCCGGACCCCTCCAGGC < 41bp 0.734844457169961 0.332504753899386 0.48532248 0.22159699 prediction 0.469688914339923 Functional Loss - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35210476 chr6:35210479 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_72052 0 0 0 0 2 SCUBE3 chr6:35210557 5'GT 35210557 Upstream 79bp
chr1 77987593 77987593 1 + C T UCEC 77987591 + 77987571 77987611 41 CTTCCTGATTGACGGCTATCCTCGGGAGGTGAAGCAAGGGG CTTCCTGATTGACGGCTATCCTTGGGAGGTGAAGCAAGGGG < 41bp 0.837616101120655 0.602774700275421 0.8005048 0.54939425 prediction 0.469682801690467 Functional Loss - AK5 ENSG00000154027 CDS Human protein_coding chr1:77987591 chr1:77987593 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_72053 0 0 0 0 1 AK5 chr1:77987512 3'AG 77987512 Downstream 82bp
chr14 62014472 62014472 1 + G T UCEC 62014469 + 62014449 62014489 41 TCTCTCACTCAGTTCATGACCAAGAACCCCACCATGCGCTT TCTCTCACTCAGTTCATGACCAATAACCCCACCATGCGCTT < 41bp 0.73483594267482 0.342074352632572 0.7327624 0.10743487 prediction 0.469671885349641 Functional Loss - PRKCH ENSG00000027075;ENSG00000258989 CDS Human other chr14:62014469 chr14:62014472 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_72058 0 0 0 0 1 PRKCH chr14:62014461 3'AG 62014461 Downstream 12bp
chr3 122399911 122399911 1 + G T UCEC 122399908 + 122399888 122399928 41 GCTTCCTGGTGTTCTTCTACCCGGAGGACGGTGAGGGGCGC GCTTCCTGGTGTTCTTCTACCCGTAGGACGGTGAGGGGCGC < 41bp 0.908620570979465 0.67378700035155 0.87722224 0.2582097 prediction 0.469667141255829 Functional Loss - PARP14 ENSG00000173193 CDS Human protein_coding chr3:122399908 chr3:122399911 stopgain 0.788 0 24 hm5C_associated_SNPs_72060 0 0 1 0 1 PARP14 chr3:122399917 5'GT 122399917 Upstream 7bp
chr15 64418364 64418364 1 + G A SKCM 64418361 + 64418341 64418381 41 GGTCTTTATGAGAAGCTTTCCGAGAAGCACTCTCAGAATGG GGTCTTTATGAGAAGCTTTCCGAAAAGCACTCTCAGAATGG < 41bp 0.752317520239416 0.517485978652409 0.7419864 0.21079326 prediction 0.469663083174014 Functional Loss - SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418361 chr15:64418364 synonymous SNV . 0 24 hm5C_associated_SNPs_72062 0 0 1 0 2 SNX1 chr15:64418278 3'AG 64418278 Downstream 87bp
chr15 64418364 64418364 1 + G A SKCM 64418361 + 64418341 64418381 41 GGTCTTTATGAGAAGCTTTCCGAGAAGCACTCTCAGAATGG GGTCTTTATGAGAAGCTTTCCGAAAAGCACTCTCAGAATGG < 41bp 0.752317520239416 0.517485978652409 0.7419864 0.21079326 prediction 0.469663083174014 Functional Loss - SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418361 chr15:64418364 synonymous SNV . 0 24 hm5C_associated_SNPs_72062 0 0 1 0 2 SNX1 chr15:64418419 5'GT 64418419 Upstream 56bp
chr10 90490889 90490889 1 + A C SARC 90490888 + 90490868 90490908 41 AGCCGAGGAAACACTTGGTCCAGAAAACACCTTAAATTGTC AGCCGAGGAAACACTTGGTCCCGAAAACACCTTAAATTGTC < 41bp 0.734825876351372 0.467762365074008 0.115186036 0.031490058 prediction 0.469651752702745 Functional Loss - LIPK ENSG00000204021 CDS Human protein_coding chr10:90490888 chr10:90490889 synonymous SNV . 0 22 hm5C_associated_SNPs_72068 0 0 0 0 1 LIPK chr10:90490938 5'GT 90490938 Upstream 50bp
chr1 159802725 159802725 1 + T C COAD 159802724 + 159802704 159802744 41 GTAGAAAGGGATGCTCAGCCCTCCAAGACCTGCCAGGTTTT GTAGAAAGGGATGCTCAGCCCCCCAAGACCTGCCAGGTTTT < 41bp 0.81788556603247 0.583065655349112 0.9474708 0.037054747 prediction 0.469639821366714 Functional Loss - SLAMF8 ENSG00000158714 CDS Human protein_coding chr1:159802724 chr1:159802725 nonsynonymous SNV 0.013 0 22 hm5C_associated_SNPs_72070 0 0 0 0 1 SLAMF8 chr1:159802666 3'AG 159802666 Downstream 60bp
chr20 61457204 61457204 1 + G A CESC 61457201 + 61457181 61457221 41 CCCCCTGGGCCCGCCGGCCTCCCGGGCAGCGTGGGGCTGCA CCCCCTGGGCCCGCCGGCCTCCCAGGCAGCGTGGGGCTGCA < 41bp 0.759714771201847 0.524899368245722 0.4749749 0.17273316 prediction 0.46963080591225 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61457201 chr20:61457204 synonymous SNV . 0 24 hm5C_associated_SNPs_72072 0 0 1 0 1 COL9A3 chr20:61457222 5'GT 61457222 Upstream 19bp
chr6 52052467 52052467 1 + G A SKCM 52052464 + 52052444 52052484 41 GAATCACAATCCCACGAAATCCAGGATGCCCAAATTCTGAG GAATCACAATCCCACGAAATCCAAGATGCCCAAATTCTGAG < 41bp 0.74633261093112 0.511521422288314 0.46039063 0.090017825 prediction 0.469622377285613 Functional Loss - IL17A ENSG00000112115 CDS Human protein_coding chr6:52052464 chr6:52052467 nonsynonymous SNV 0.077 0 24 hm5C_associated_SNPs_72073 0 0 0 0 1 IL17A chr6:52052401 3'AG 52052401 Downstream 67bp
chr4 25315715 25315715 1 + C T COAD 25315713 + 25315693 25315733 41 GACCCAAGGGAAAGAAGAAACTCGGAGGTTTTATGCCTGTT GACCCAAGGGAAAGAAGAAACTTGGAGGTTTTATGCCTGTT < 41bp 0.838045637281 0.603236853020577 0.20379585 0.18654671 prediction 0.469617568520846 Functional Loss - ZCCHC4 ENSG00000168228 CDS Human protein_coding chr4:25315713 chr4:25315715 nonsynonymous SNV 0.973 1 23 hm5C_associated_SNPs_72076 0 0 1 0 2 ZCCHC4 chr4:25315668 3'AG 25315668 Downstream 48bp
chr4 25315715 25315715 1 + C T COAD 25315713 + 25315693 25315733 41 GACCCAAGGGAAAGAAGAAACTCGGAGGTTTTATGCCTGTT GACCCAAGGGAAAGAAGAAACTTGGAGGTTTTATGCCTGTT < 41bp 0.838045637281 0.603236853020577 0.20379585 0.18654671 prediction 0.469617568520846 Functional Loss - ZCCHC4 ENSG00000168228 CDS Human protein_coding chr4:25315713 chr4:25315715 nonsynonymous SNV 0.973 1 23 hm5C_associated_SNPs_72076 0 0 1 0 2 ZCCHC4 chr4:25315786 5'GT 25315786 Upstream 72bp
chr16 70497609 70497609 1 + A C BRCA 70497608 + 70497588 70497628 41 GACCCAGAGAAGCGTGTGGGCAGCGGAGGAGCCACCCTCAA GACCCAGAGAAGCGTGTGGGCCGCGGAGGAGCCACCCTCAA < 41bp 0.782872141236421 0.54806381396278 0.90311176 0.597901 prediction 0.469616654547284 Functional Loss - FUK ENSG00000157353 CDS Human protein_coding chr16:70497608 chr16:70497609 nonsynonymous SNV 0.875 3 22 hm5C_associated_SNPs_72077 0 0 1 0 2 FUK chr16:70497526 3'AG 70497526 Downstream 84bp
chr16 70497609 70497609 1 + A C BRCA 70497608 + 70497588 70497628 41 GACCCAGAGAAGCGTGTGGGCAGCGGAGGAGCCACCCTCAA GACCCAGAGAAGCGTGTGGGCCGCGGAGGAGCCACCCTCAA < 41bp 0.782872141236421 0.54806381396278 0.90311176 0.597901 prediction 0.469616654547284 Functional Loss - FUK ENSG00000157353 CDS Human protein_coding chr16:70497608 chr16:70497609 nonsynonymous SNV 0.875 3 22 hm5C_associated_SNPs_72077 0 0 1 0 2 FUK chr16:70497677 5'GT 70497677 Upstream 69bp
chr8 124988167 124988167 1 + T C rs75339130 124988166 + 124988146 124988186 41 TGATCCCCAATGGGTTTCCACTGGAGAGACCGTGGGCCAGA TGATCCCCAATGGGTTTCCACCGGAGAGACCGTGGGCCAGA < 41bp 0.748970798934107 0.514162667464881 0.08872807 0.22854897 prediction 0.469616262938451 Functional Loss - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:124988166 chr8:124988167 nonsynonymous SNV 0.418 1 22 hm5C_associated_SNPs_72078 0 0 0 0 1 FER1L6 chr8:124988138 3'AG 124988138 Downstream 30bp
chr9 101904939 101904939 1 + G A LUSC 101904936 + 101904916 101904956 41 ATGATAAAACTTGCTCTGTCCACGGCGAGCGGTCTTGCCCA ATGATAAAACTTGCTCTGTCCACAGCGAGCGGTCTTGCCCA < 41bp 0.753307724695653 0.518501074284389 0.24995628 0.06133181 prediction 0.469613300822528 Functional Loss - TGFBR1 ENSG00000106799 CDS Human protein_coding chr9:101904936 chr9:101904939 synonymous SNV . 0 24 hm5C_associated_SNPs_72081 0 0 1 0 1 TGFBR1 chr9:101904985 5'GT 101904985 Upstream 47bp
chr1 156618411 156618411 1 + G A LUAD 156618408 + 156618388 156618428 41 GAAGCTGACATTGGAGGAAGCACGGGCGTACTGCCAGGAGC GAAGCTGACATTGGAGGAAGCACAGGCGTACTGCCAGGAGC < 41bp 0.776000866379754 0.541195911792606 0.9012347 0.8838192 prediction 0.469609909174296 Functional Loss - BCAN ENSG00000132692 CDS Human protein_coding chr1:156618408 chr1:156618411 nonsynonymous SNV 0.700 0 24 hm5C_associated_SNPs_72082 0 0 0 0 1 BCAN chr1:156618360 3'AG 156618360 Downstream 52bp
chrX 47032551 47032551 1 + G A COAD 47032548 + 47032528 47032568 41 TCCGTGGCCAGCTGCAGTCGCACGGCGTGCAAGCACGGGAG TCCGTGGCCAGCTGCAGTCGCACAGCGTGCAAGCACGGGAG < 41bp 0.785897463060791 0.551092901380001 0.26624334 0.16017514 prediction 0.46960912336158 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47032548 chrX:47032551 nonsynonymous SNV 0.899 4 24 hm5C_associated_SNPs_72083 0 0 1 0 2 RBM10 chrX:47032527 3'AG 47032527 Downstream 25bp
chrX 47032551 47032551 1 + G A COAD 47032548 + 47032528 47032568 41 TCCGTGGCCAGCTGCAGTCGCACGGCGTGCAAGCACGGGAG TCCGTGGCCAGCTGCAGTCGCACAGCGTGCAAGCACGGGAG < 41bp 0.785897463060791 0.551092901380001 0.26624334 0.16017514 prediction 0.46960912336158 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47032548 chrX:47032551 nonsynonymous SNV 0.899 4 24 hm5C_associated_SNPs_72083 0 0 1 0 2 RBM10 chrX:47032596 5'GT 47032596 Upstream 46bp
chr1 47501543 47501543 1 + G A COAD 47501540 + 47501520 47501560 41 GAGGTCTATGAGCACATCAACTCGATGTCTCTGGATATAAT GAGGTCTATGAGCACATCAACTCAATGTCTCTGGATATAAT < 41bp 0.734802196817309 0.499883057837023 0.43784907 0.18820217 prediction 0.469604393634618 Functional Loss - CYP4X1 ENSG00000186377 CDS Human protein_coding chr1:47501540 chr1:47501543 synonymous SNV . 0 24 hm5C_associated_SNPs_72085 0 0 0 0 2 CYP4X1 chr1:47501478 3'AG 47501478 Downstream 66bp
chr1 47501543 47501543 1 + G A COAD 47501540 + 47501520 47501560 41 GAGGTCTATGAGCACATCAACTCGATGTCTCTGGATATAAT GAGGTCTATGAGCACATCAACTCAATGTCTCTGGATATAAT < 41bp 0.734802196817309 0.499883057837023 0.43784907 0.18820217 prediction 0.469604393634618 Functional Loss - CYP4X1 ENSG00000186377 CDS Human protein_coding chr1:47501540 chr1:47501543 synonymous SNV . 0 24 hm5C_associated_SNPs_72085 0 0 0 0 2 CYP4X1 chr1:47501605 5'GT 47501605 Upstream 63bp
chr1 47501542 47501542 1 + C T SKCM 47501540 + 47501520 47501560 41 GAGGTCTATGAGCACATCAACTCGATGTCTCTGGATATAAT GAGGTCTATGAGCACATCAACTTGATGTCTCTGGATATAAT < 41bp 0.734802196817309 0.432791136816517 0.43784907 0.090078175 prediction 0.469604393634618 Functional Loss - CYP4X1 ENSG00000186377 CDS Human protein_coding chr1:47501540 chr1:47501542 nonsynonymous SNV 0.794 0 23 hm5C_associated_SNPs_72086 0 0 0 0 2 CYP4X1 chr1:47501478 3'AG 47501478 Downstream 65bp
chr1 47501542 47501542 1 + C T SKCM 47501540 + 47501520 47501560 41 GAGGTCTATGAGCACATCAACTCGATGTCTCTGGATATAAT GAGGTCTATGAGCACATCAACTTGATGTCTCTGGATATAAT < 41bp 0.734802196817309 0.432791136816517 0.43784907 0.090078175 prediction 0.469604393634618 Functional Loss - CYP4X1 ENSG00000186377 CDS Human protein_coding chr1:47501540 chr1:47501542 nonsynonymous SNV 0.794 0 23 hm5C_associated_SNPs_72086 0 0 0 0 2 CYP4X1 chr1:47501605 5'GT 47501605 Upstream 64bp
chr22 50655488 50655488 1 + G A rs34195747 50655485 + 50655465 50655505 41 CGCGTGATGCACGCCAACAACCCGAAGTACGTGCTGAGGAA CGCGTGATGCACGCCAACAACCCAAAGTACGTGCTGAGGAA < 41bp 0.761563868133031 0.526769170727833 0.39091954 0.21938834 prediction 0.469589394810396 Functional Loss - SELENOO ENSG00000073169 CDS Human protein_coding chr22:50655485 chr22:50655488 unknown . 0 24 hm5C_associated_SNPs_72087 0 0 0 0 1 SELENOO chr22:50655401 3'AG 50655401 Downstream 88bp
chr1 155150991 155150991 1 + T C COAD 155150990 + 155150970 155151010 41 TTGCCCGAGCCACTGAAGCCCTCCAGACATTCCGGCCAGCT TTGCCCGAGCCACTGAAGCCCCCCAGACATTCCGGCCAGCT < 41bp 0.734792518132079 0.474517779437821 0.9520824 0.21450633 prediction 0.469585036264159 Functional Loss - TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155150990 chr1:155150991 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_72089 0 0 0 0 2 TRIM46 chr1:155150968 3'AG 155150968 Downstream 24bp
chr1 155150991 155150991 1 + T C COAD 155150990 + 155150970 155151010 41 TTGCCCGAGCCACTGAAGCCCTCCAGACATTCCGGCCAGCT TTGCCCGAGCCACTGAAGCCCCCCAGACATTCCGGCCAGCT < 41bp 0.734792518132079 0.474517779437821 0.9520824 0.21450633 prediction 0.469585036264159 Functional Loss - TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155150990 chr1:155150991 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_72089 0 0 0 0 2 TRIM46 chr1:155151089 5'GT 155151089 Upstream 99bp
chr17 18389368 18389368 1 + C T rs373191943 18389366 + 18389346 18389386 41 GGCAGAAAGGAACATGGGGGCCCGAGGAGAGGAAGATGCAC GGCAGAAAGGAACATGGGGGCCTGAGGAGAGGAAGATGCAC < 41bp 0.734788919115608 0.468249209614083 0.47294152 0.7355123 prediction 0.469577838231216 Functional Loss - LGALS9C ENSG00000171916 CDS Human protein_coding chr17:18389366 chr17:18389368 stopgain . 0 23 hm5C_associated_SNPs_72092 0 0 0 0 1 LGALS9C chr17:18389449 5'GT 18389449 Upstream 82bp
chr17 32962042 32962042 1 + G A UCEC 32962039 + 32962019 32962059 41 CTTCATGCGGGTGGGCGATCCCCGAGTGGCACACATGGTGG CTTCATGCGGGTGGGCGATCCCCAAGTGGCACACATGGTGG < 41bp 0.760777623786923 0.525991104477262 0.6915757 0.2634794 prediction 0.469573038619321 Functional Loss - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32962039 chr17:32962042 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_72094 0 0 0 0 1 TMEM132E chr17:32962106 5'GT 32962106 Upstream 65bp
chr3 14939126 14939126 1 + C T HNSC 14939124 + 14939104 14939144 41 TGAGTGAACTCCCAGCCATCCACGACCTTCATCAAGGCATC TGAGTGAACTCCCAGCCATCCATGACCTTCATCAAGGCATC < 41bp 0.734784880735906 0.448034528576727 0.32124558 0.11806357 prediction 0.469569761471811 Functional Loss - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14939124 chr3:14939126 synonymous SNV . 0 23 hm5C_associated_SNPs_72095 0 0 0 0 1 FGD5 chr3:14939176 5'GT 14939176 Upstream 51bp
chr17 19318422 19318422 1 + G A STAD 19318419 + 19318399 19318439 41 TGCTGAGTGCGGCCCCCCAGCACGCTAAGAGCCGCTGCCAG TGCTGAGTGCGGCCCCCCAGCACACTAAGAGCCGCTGCCAG < 41bp 0.734784227940688 0.481711311085337 0.26873392 0.16814 prediction 0.469568455881376 Functional Loss - RNF112 ENSG00000128482 CDS Human protein_coding chr17:19318419 chr17:19318422 nonsynonymous SNV 0.983 0 24 hm5C_associated_SNPs_72096 0 0 0 0 1 RNF112 chr17:19318351 3'AG 19318351 Downstream 72bp
chr16 56704426 56704426 1 + T C HNSC 56704425 + 56704405 56704445 41 CTATTCCTTGCAGGTGGCTCCTGCGCCTGCGCCGGCTCCTG CTATTCCTTGCAGGTGGCTCCCGCGCCTGCGCCGGCTCCTG < 41bp 0.736496804034695 0.501718642221715 0.4343355 0.61159 prediction 0.469556323625959 Functional Loss - MT1H ENSG00000205358 CDS Human protein_coding chr16:56704425 chr16:56704426 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_72099 0 0 0 0 1 MT1H chr16:56704418 3'AG 56704418 Downstream 9bp
chr1 28598336 28598336 1 + C T COAD 28598334 + 28598314 28598354 41 CTGCACTACCTGCTGCTGCACACGGATGGTCCCTTGGCCAG CTGCACTACCTGCTGCTGCACATGGATGGTCCCTTGGCCAG < 41bp 0.807234570630603 0.572470917959114 0.37588474 0.49574274 prediction 0.469527305342979 Functional Loss - SESN2 ENSG00000130766 CDS Human protein_coding chr1:28598334 chr1:28598336 nonsynonymous SNV 0.974 1 23 hm5C_associated_SNPs_72104 0 0 1 0 1 SESN2 chr1:28598382 5'GT 28598382 Upstream 47bp
chr4 7055807 7055807 1 + G A UCEC 7055804 + 7055784 7055824 41 CGTAGGAAGATATGGCTGCCCACGTTGGTGCTTCCCGGACT CGTAGGAAGATATGGCTGCCCACATTGGTGCTTCCCGGACT < 41bp 0.745774926172236 0.511017117233819 0.20370507 0.13347614 prediction 0.469515617876832 Functional Loss - TADA2B ENSG00000173011 CDS Human protein_coding chr4:7055804 chr4:7055807 nonsynonymous SNV 0.010 1 24 hm5C_associated_SNPs_72107 0 0 1 0 1 TADA2B chr4:7055789 3'AG 7055789 Downstream 19bp
chr3 14768418 14768418 1 + G T UCEC 14768416 + 14768396 14768436 41 GCCCCTCTCCAGCTGAACCGCAGAATCAGCAACATGGACGA GCCCCTCTCCAGCTGAACCGCATAATCAGCAACATGGACGA < 41bp 0.73475365941771 0.37599499472523 0.12079522 0.038411677 prediction 0.46950731883542 Functional Loss - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14768416 chr3:14768418 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_72109 0 0 0 0 1 C3orf20 chr3:14768408 3'AG 14768408 Downstream 11bp
chr20 30661153 30661153 1 + G A SKCM 30661150 + 30661130 30661170 41 TAGCCACAACAGCAACACACCAGGAATCAGGGAGGGTAAGT TAGCCACAACAGCAACACACCAGAAATCAGGGAGGGTAAGT < 41bp 0.748402489451789 0.51364952850986 0.32263595 0.13788742 prediction 0.469505921883857 Functional Loss - HCK ENSG00000101336 CDS Human protein_coding chr20:30661150 chr20:30661153 nonsynonymous SNV 0.036 0 24 hm5C_associated_SNPs_72110 0 0 0 0 1 HCK chr20:30661122 3'AG 30661122 Downstream 32bp
chr21 47422195 47422195 1 + G A rs147219060 47422192 + 47422172 47422212 41 ACGGGGGAGGCCCTGCAGTACACGCGGGACCAGCTGCTGCC ACGGGGGAGGCCCTGCAGTACACACGGGACCAGCTGCTGCC < 41bp 0.734751574204535 0.488449309312145 0.37073252 0.16480312 prediction 0.46950314840907 Functional Loss - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47422192 chr21:47422195 synonymous SNV . 0 24 hm5C_associated_SNPs_72112 2 0 0 0 1 COL6A1 chr21:47422132 3'AG 47422132 Downstream 64bp
chr1 55464937 55464937 1 + G A BLCA 55464934 + 55464914 55464954 41 CTGGCCCTCGGTACGTTCCTCATGAGCCATGATCGGCCCCA CTGGCCCTCGGTACGTTCCTCATAAGCCATGATCGGCCCCA < 41bp 0.73474884517205 0.493881104787423 0.40165195 0.2266627 prediction 0.469497690344099 Functional Loss - BSND ENSG00000162399 CDS Human protein_coding chr1:55464934 chr1:55464937 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_72114 0 0 0 0 1 BSND chr1:55465036 5'GT 55465036 Upstream 100bp
chr7 143028701 143028701 1 + C T UCEC 143028699 + 143028679 143028719 41 ATCTGCATCGCCAAGTCATGCTCGGTGTCCGAAAGCACAAG ATCTGCATCGCCAAGTCATGCTTGGTGTCCGAAAGCACAAG < 41bp 0.734748409012779 0.467245596140817 0.12841153 0.10317883 prediction 0.469496818025558 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143028699 chr7:143028701 synonymous SNV . 0 23 hm5C_associated_SNPs_72116 0 0 0 0 2 CLCN1 chr7:143028644 3'AG 143028644 Downstream 58bp
chr7 143028701 143028701 1 + C T UCEC 143028699 + 143028679 143028719 41 ATCTGCATCGCCAAGTCATGCTCGGTGTCCGAAAGCACAAG ATCTGCATCGCCAAGTCATGCTTGGTGTCCGAAAGCACAAG < 41bp 0.734748409012779 0.467245596140817 0.12841153 0.10317883 prediction 0.469496818025558 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143028699 chr7:143028701 synonymous SNV . 0 23 hm5C_associated_SNPs_72116 0 0 0 0 2 CLCN1 chr7:143028745 5'GT 143028745 Upstream 45bp
chr22 44547423 44547423 1 + G A CESC 44547420 + 44547400 44547440 41 TGAATTTGGAGGTGACGGAACTGGAGACCCAGGTATGTGCT TGAATTTGGAGGTGACGGAACTGAAGACCCAGGTATGTGCT < 41bp 0.734743024181676 0.491982763489117 0.6965407 0.35043755 prediction 0.469486048363352 Functional Loss - PARVB ENSG00000188677 CDS Human protein_coding chr22:44547420 chr22:44547423 nonsynonymous SNV 0.956 4 24 hm5C_associated_SNPs_72121 0 0 1 0 2 PARVB chr22:44547363 3'AG 44547363 Downstream 61bp
chr22 44547423 44547423 1 + G A CESC 44547420 + 44547400 44547440 41 TGAATTTGGAGGTGACGGAACTGGAGACCCAGGTATGTGCT TGAATTTGGAGGTGACGGAACTGAAGACCCAGGTATGTGCT < 41bp 0.734743024181676 0.491982763489117 0.6965407 0.35043755 prediction 0.469486048363352 Functional Loss - PARVB ENSG00000188677 CDS Human protein_coding chr22:44547420 chr22:44547423 nonsynonymous SNV 0.956 4 24 hm5C_associated_SNPs_72121 0 0 1 0 2 PARVB chr22:44547431 5'GT 44547431 Upstream 9bp
chrY 6115633 6115633 1 + T C LUSC 6115632 + 6115612 6115652 41 GAGAAGCATCGTGTTCATCTCTGCAAGATCATGTTGTTCTT GAGAAGCATCGTGTTCATCTCCGCAAGATCATGTTGTTCTT < 41bp 0.803062719253189 0.568324115998293 0.7415263 0.29840404 prediction 0.469477206509792 Functional Loss - TSPY2 ENSG00000168757 CDS Human protein_coding chrY:6115632 chrY:6115633 nonsynonymous SNV 0.055 0 22 hm5C_associated_SNPs_72124 0 0 0 0 2 TSPY2 chrY:6115603 3'AG 6115603 Downstream 31bp
chrY 6115633 6115633 1 + T C LUSC 6115632 + 6115612 6115652 41 GAGAAGCATCGTGTTCATCTCTGCAAGATCATGTTGTTCTT GAGAAGCATCGTGTTCATCTCCGCAAGATCATGTTGTTCTT < 41bp 0.803062719253189 0.568324115998293 0.7415263 0.29840404 prediction 0.469477206509792 Functional Loss - TSPY2 ENSG00000168757 CDS Human protein_coding chrY:6115632 chrY:6115633 nonsynonymous SNV 0.055 0 22 hm5C_associated_SNPs_72124 0 0 0 0 2 TSPY2 chrY:6115714 5'GT 6115714 Upstream 82bp
chr2 228389506 228389506 1 + A C PRAD 228389505 + 228389485 228389525 41 TTGTAGGTCGTTCTCAAGGGCAGCAGCAGGAGAAGAAGCAA TTGTAGGTCGTTCTCAAGGGCCGCAGCAGGAGAAGAAGCAA < 41bp 0.734729316446426 0.491114653659968 0.1301988 0.07880247 prediction 0.469458632892852 Functional Loss - AGFG1 ENSG00000173744 CDS Human protein_coding chr2:228389505 chr2:228389506 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_72125 0 0 1 0 1 AGFG1 chr2:228389478 3'AG 228389478 Downstream 29bp
chr15 89020277 89020277 1 + G T STAD 89020275 + 89020255 89020295 41 TGTGGTGAAAGGCCTGGGGCCAGGACGCTTGGTAAGTTACA TGTGGTGAAAGGCCTGGGGCCATGACGCTTGGTAAGTTACA < 41bp 0.734728185271399 0.38952387596146 0.4625224 0.12854531 prediction 0.469456370542799 Functional Loss - MRPS11 ENSG00000181991 CDS Human protein_coding chr15:89020275 chr15:89020277 stopgain 0.995 1 23 hm5C_associated_SNPs_72126 0 0 1 0 2 MRPS11 chr15:89020220 3'AG 89020220 Downstream 58bp
chr15 89020277 89020277 1 + G T STAD 89020275 + 89020255 89020295 41 TGTGGTGAAAGGCCTGGGGCCAGGACGCTTGGTAAGTTACA TGTGGTGAAAGGCCTGGGGCCATGACGCTTGGTAAGTTACA < 41bp 0.734728185271399 0.38952387596146 0.4625224 0.12854531 prediction 0.469456370542799 Functional Loss - MRPS11 ENSG00000181991 CDS Human protein_coding chr15:89020275 chr15:89020277 stopgain 0.995 1 23 hm5C_associated_SNPs_72126 0 0 1 0 2 MRPS11 chr15:89020285 5'GT 89020285 Upstream 9bp
chr22 44585085 44585085 1 + G A BLCA 44585082 + 44585062 44585102 41 CTCACAGTGGTGCTGGAGGCCGTGAACCGGAGTCTGCAGCT CTCACAGTGGTGCTGGAGGCCGTAAACCGGAGTCTGCAGCT < 41bp 0.762823020203986 0.528102936277763 0.5726678 0.21719947 prediction 0.469440167852446 Functional Loss - PARVG ENSG00000138964 CDS Human protein_coding chr22:44585082 chr22:44585085 synonymous SNV . 0 24 hm5C_associated_SNPs_72127 0 0 0 0 1 PARVG chr22:44584994 3'AG 44584994 Downstream 92bp
chr4 1808406 1808406 1 + G A COAD 1808403 + 1808383 1808423 41 ACAAGCCCGCCAACTGCACACACGACCTGTGAGTGGCATCC ACAAGCCCGCCAACTGCACACACAACCTGTGAGTGGCATCC < 41bp 0.73524079213906 0.500522797512624 0.037708253 0.019790232 prediction 0.469435989252874 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1808403 chr4:1808406 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_72128 0 0 0 0 1 FGFR3 chr4:1808410 5'GT 1808410 Upstream 5bp
chr3 38045795 38045795 1 + A C rs184474807 38045791 + 38045771 38045811 41 CAGCCACGACTGTTTGAGTGCTCCAGCCACATGGGCTGCCT CAGCCACGACTGTTTGAGTGCTCCCGCCACATGGGCTGCCT < 41bp 0.734704956579917 0.293660257021149 0.61910206 0.07221338 prediction 0.469409913159834 Functional Loss - VILL ENSG00000136059 CDS Human protein_coding chr3:38045791 chr3:38045795 nonsynonymous SNV 0.975 1 25 hm5C_associated_SNPs_72131 0 0 1 0 2 VILL chr3:38045746 3'AG 38045746 Downstream 50bp
chr3 38045795 38045795 1 + A C rs184474807 38045791 + 38045771 38045811 41 CAGCCACGACTGTTTGAGTGCTCCAGCCACATGGGCTGCCT CAGCCACGACTGTTTGAGTGCTCCCGCCACATGGGCTGCCT < 41bp 0.734704956579917 0.293660257021149 0.61910206 0.07221338 prediction 0.469409913159834 Functional Loss - VILL ENSG00000136059 CDS Human protein_coding chr3:38045791 chr3:38045795 nonsynonymous SNV 0.975 1 25 hm5C_associated_SNPs_72131 0 0 1 0 2 VILL chr3:38045890 5'GT 38045890 Upstream 96bp
chr15 42129083 42129083 1 + C T rs117869806 42129081 + 42129061 42129101 41 CGGTGCGGGCCGGTGAGATGCTCTATCTGCCGGCTCTGTGG CGGTGCGGGCCGGTGAGATGCTTTATCTGCCGGCTCTGTGG < 41bp 0.734701692203534 0.465009299472447 0.9361467 0.30655295 prediction 0.469403384407067 Functional Loss - JMJD7 ENSG00000168970;ENSG00000243789 CDS Human other chr15:42129081 chr15:42129083 synonymous SNV . 0 23 hm5C_associated_SNPs_72134 0 0 1 0 1 JMJD7 chr15:42129138 5'GT 42129138 Upstream 56bp
chr19 4307920 4307920 1 + G A rs148407733 4307917 + 4307897 4307937 41 ACGCGGGCCCTGGAGAGCTCCGAGGAGCTTCTGGAGACAGC ACGCGGGCCCTGGAGAGCTCCGAAGAGCTTCTGGAGACAGC < 41bp 0.753639134813786 0.518938333247584 0.8858559 0.47593644 prediction 0.469401603132404 Functional Loss - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4307917 chr19:4307920 synonymous SNV . 0 24 hm5C_associated_SNPs_72135 0 0 0 0 2 FSD1 chr19:4307879 3'AG 4307879 Downstream 42bp
chr19 4307920 4307920 1 + G A rs148407733 4307917 + 4307897 4307937 41 ACGCGGGCCCTGGAGAGCTCCGAGGAGCTTCTGGAGACAGC ACGCGGGCCCTGGAGAGCTCCGAAGAGCTTCTGGAGACAGC < 41bp 0.753639134813786 0.518938333247584 0.8858559 0.47593644 prediction 0.469401603132404 Functional Loss - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4307917 chr19:4307920 synonymous SNV . 0 24 hm5C_associated_SNPs_72135 0 0 0 0 2 FSD1 chr19:4307980 5'GT 4307980 Upstream 61bp
chr16 68725808 68725808 1 + G A BLCA 68725805 + 68725785 68725825 41 GAGGTTTCATCCTCCCTGTGCTGGGGGCTGTCCTGGCTCTG GAGGTTTCATCCTCCCTGTGCTGAGGGCTGTCCTGGCTCTG < 41bp 0.797374630153331 0.562675654316126 0.65571654 0.15153468 prediction 0.469397951674408 Functional Loss - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68725805 chr16:68725808 nonsynonymous SNV 0.923 2 24 hm5C_associated_SNPs_72136 0 0 0 0 1 CDH3 chr16:68725829 5'GT 68725829 Upstream 22bp
chr8 94713525 94713525 1 + T C LGG 94713524 + 94713504 94713544 41 TTTGGAGAACTGTGCCAAATCTTCGCTGCCTATGTGCGGAA TTTGGAGAACTGTGCCAAATCCTCGCTGCCTATGTGCGGAA < 41bp 0.734691178869894 0.495466584694281 0.24142921 0.30623183 prediction 0.469382357739788 Functional Loss - FAM92A ENSG00000188343 CDS Human protein_coding chr8:94713524 chr8:94713525 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_72138 0 0 0 0 1 FAM92A chr8:94713452 3'AG 94713452 Downstream 74bp
chr3 87302886 87302886 1 + C T READ 87302884 + 87302864 87302904 41 GGCCAAAGCTCCATCAGCTGCTCGAAGCTTACCATCTGCCT GGCCAAAGCTCCATCAGCTGCTTGAAGCTTACCATCTGCCT < 41bp 0.805634311210689 0.570950610342372 0.29973823 0.040712267 prediction 0.469367401736634 Functional Loss - CHMP2B ENSG00000083937 CDS Human protein_coding chr3:87302884 chr3:87302886 stopgain 0.145 1 23 hm5C_associated_SNPs_72142 2 0 1 0 1 CHMP2B chr3:87302862 3'AG 87302862 Downstream 25bp
chr7 134613556 134613556 1 + G T SARC 134613554 + 134613534 134613574 41 AAGAGGAGGCAGCCCGGGAACGGCGCCGCCGAGCCCGACAG AAGAGGAGGCAGCCCGGGAACGTCGCCGCCGAGCCCGACAG < 41bp 0.894526820413714 0.659850056610671 0.5971314 0.23368844 prediction 0.469353527606085 Functional Loss - CALD1 ENSG00000122786 CDS Human protein_coding chr7:134613554 chr7:134613556 synonymous SNV . 0 23 hm5C_associated_SNPs_72145 0 0 1 0 2 CALD1 chr7:134613628 5'GT 134613628 Upstream 73bp
chr7 134613556 134613556 1 + G T SARC 134613554 + 134613534 134613574 41 AAGAGGAGGCAGCCCGGGAACGGCGCCGCCGAGCCCGACAG AAGAGGAGGCAGCCCGGGAACGTCGCCGCCGAGCCCGACAG < 41bp 0.894526820413714 0.659850056610671 0.5971314 0.23368844 prediction 0.469353527606085 Functional Loss - CALD1 ENSG00000122786 CDS Human protein_coding chr7:134613554 chr7:134613556 synonymous SNV . 0 23 hm5C_associated_SNPs_72145 0 0 1 0 2 CALD1 chr7:134613651 5'GT 134613651 Upstream 96bp
chr17 79682526 79682526 1 + C T UCEC 79682524 + 79682504 79682544 41 CCAGATGACCTACTCCCTGACTCGGTTCGCCATCTACGAGA CCAGATGACCTACTCCCTGACTTGGTTCGCCATCTACGAGA < 41bp 0.813554850402897 0.578883067643783 0.0122538805 0.0066744685 prediction 0.469343565518229 Functional Loss - SLC25A10 ENSG00000183048;ENSG00000262660 CDS Human other chr17:79682524 chr17:79682526 nonsynonymous SNV 0.990 4 23 hm5C_associated_SNPs_72147 0 0 1 0 2 SLC25A10 chr17:79682508 3'AG 79682508 Downstream 19bp
chr17 79682526 79682526 1 + C T UCEC 79682524 + 79682504 79682544 41 CCAGATGACCTACTCCCTGACTCGGTTCGCCATCTACGAGA CCAGATGACCTACTCCCTGACTTGGTTCGCCATCTACGAGA < 41bp 0.813554850402897 0.578883067643783 0.0122538805 0.0066744685 prediction 0.469343565518229 Functional Loss - SLC25A10 ENSG00000183048;ENSG00000262660 CDS Human other chr17:79682524 chr17:79682526 nonsynonymous SNV 0.990 4 23 hm5C_associated_SNPs_72147 0 0 1 0 2 SLC25A10 chr17:79682622 5'GT 79682622 Upstream 97bp
chr7 100469281 100469281 1 + C T BLCA 100469279 + 100469259 100469299 41 GCGTGGTGTGTCACCGCGGCCTCGACGGCATCCCCTTCACA GCGTGGTGTGTCACCGCGGCCTTGACGGCATCCCCTTCACA < 41bp 0.835266435494922 0.600595268746695 0.1323176 0.037649244 prediction 0.469342333496454 Functional Loss - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100469279 chr7:100469281 synonymous SNV . 0 23 hm5C_associated_SNPs_72149 0 0 1 0 1 TRIP6 chr7:100469343 5'GT 100469343 Upstream 63bp
chr16 57151438 57151438 1 + G A COAD 57151435 + 57151415 57151455 41 CCCAGGAGCTGTCCGACAACCGCGTCATCACACTAAGCCTG CCCAGGAGCTGTCCGACAACCGCATCATCACACTAAGCCTG < 41bp 0.77614647391562 0.54147804681329 0.60900956 0.19637245 prediction 0.469336854204658 Functional Loss - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57151435 chr16:57151438 nonsynonymous SNV 0.975 1 24 hm5C_associated_SNPs_72151 0 0 0 0 2 CPNE2 chr16:57151408 3'AG 57151408 Downstream 31bp
chr16 57151438 57151438 1 + G A COAD 57151435 + 57151415 57151455 41 CCCAGGAGCTGTCCGACAACCGCGTCATCACACTAAGCCTG CCCAGGAGCTGTCCGACAACCGCATCATCACACTAAGCCTG < 41bp 0.77614647391562 0.54147804681329 0.60900956 0.19637245 prediction 0.469336854204658 Functional Loss - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57151435 chr16:57151438 nonsynonymous SNV 0.975 1 24 hm5C_associated_SNPs_72151 0 0 0 0 2 CPNE2 chr16:57151479 5'GT 57151479 Upstream 42bp
chr14 70420220 70420220 1 + G T UCEC 70420217 + 70420197 70420237 41 CTCAGGAAGCTGTGTTTGTCCCAGAGTGTGGCGAGGATGGC CTCAGGAAGCTGTGTTTGTCCCATAGTGTGGCGAGGATGGC < 41bp 0.734664119580517 0.338767384659499 0.4323177 0.14900672 prediction 0.469328239161033 Functional Loss - SMOC1 ENSG00000198732 CDS Human protein_coding chr14:70420217 chr14:70420220 stopgain 0.985 1 24 hm5C_associated_SNPs_72153 0 0 1 0 2 SMOC1 chr14:70420137 3'AG 70420137 Downstream 84bp
chr14 70420220 70420220 1 + G T UCEC 70420217 + 70420197 70420237 41 CTCAGGAAGCTGTGTTTGTCCCAGAGTGTGGCGAGGATGGC CTCAGGAAGCTGTGTTTGTCCCATAGTGTGGCGAGGATGGC < 41bp 0.734664119580517 0.338767384659499 0.4323177 0.14900672 prediction 0.469328239161033 Functional Loss - SMOC1 ENSG00000198732 CDS Human protein_coding chr14:70420217 chr14:70420220 stopgain 0.985 1 24 hm5C_associated_SNPs_72153 0 0 1 0 2 SMOC1 chr14:70420249 5'GT 70420249 Upstream 30bp
chr15 72699064 72699064 1 + G T LUSC 72699062 + 72699042 72699082 41 GCATGACCACCAACTTGGATCTGAAGGTATCCATGCTCAGC GCATGACCACCAACTTGGATCTTAAGGTATCCATGCTCAGC < 41bp 0.734658908138856 0.397111807945277 0.19529876 0.21135029 prediction 0.469317816277713 Functional Loss - TMEM202 ENSG00000187806 CDS Human protein_coding chr15:72699062 chr15:72699064 synonymous SNV . 0 23 hm5C_associated_SNPs_72154 0 0 0 1 1 TMEM202 chr15:72699092 5'GT 72699092 Upstream 29bp
chrX 73218813 73218813 1 + G A rs187606237 73218810 + 73218790 73218830 41 CTGGAGTGCAGTGGCGCAATCTCGGCTCTCTGCAACCTTCA CTGGAGTGCAGTGGCGCAATCTCAGCTCTCTGCAACCTTCA < 41bp 0.764997560378967 0.530342682201221 0.40647396 0.2559173 prediction 0.469309756355494 Functional Loss - JPX ENSG00000225470 ncRNA_exonic Human lincRNA chrX:73218810 chrX:73218813 . . 0 24 hm5C_associated_SNPs_72155 0 0 1 0 1 JPX chrX:73218789 3'AG 73218789 Downstream 25bp
chr11 59559682 59559682 1 + G A BRCA 59559679 + 59559659 59559699 41 AAGGGCGAATCCAGCGGCAGCTCGAAATTAGTATGTACTTG AAGGGCGAATCCAGCGGCAGCTCAAAATTAGTATGTACTTG < 41bp 0.75127167423607 0.516617155908443 0.21068096 0.3257088 prediction 0.469309036655253 Functional Loss - STX3 ENSG00000166900 CDS Human protein_coding chr11:59559679 chr11:59559682 nonsynonymous SNV 0.901 3 24 hm5C_associated_SNPs_72156 0 0 0 0 1 STX3 chr11:59559688 5'GT 59559688 Upstream 7bp
chr7 70597969 70597969 1 + G T BRCA 70597966 + 70597946 70597986 41 CGCACAGCGCCAGCCCCATCCAGGATGCGGTCCTGAAGCGC CGCACAGCGCCAGCCCCATCCAGTATGCGGTCCTGAAGCGC < 41bp 0.894649075149959 0.659996736676715 0.8832803 0.23960367 prediction 0.469304676946487 Functional Loss - GALNT17 ENSG00000185274 CDS Human protein_coding chr7:70597966 chr7:70597969 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_72157 0 0 0 0 1 GALNT17 chr7:70598026 5'GT 70598026 Upstream 58bp
chr17 26818588 26818588 1 + G A PRAD 26818585 + 26818565 26818605 41 GCCAGCATCGGGGGCATCGCCACGCTGACTGGCACCGCACC GCCAGCATCGGGGGCATCGCCACACTGACTGGCACCGCACC < 41bp 0.774710614900317 0.540069899982893 0.94445676 0.93939495 prediction 0.469281429834848 Functional Loss - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26818585 chr17:26818588 synonymous SNV . 0 24 hm5C_associated_SNPs_72164 0 0 0 0 1 SLC13A2 chr17:26818635 5'GT 26818635 Upstream 48bp
chr15 41770792 41770792 1 + G A UCEC 41770789 + 41770769 41770809 41 CCAACAGATGGATCCCTTTACTCGGCGGCAGTGCAAGCCTA CCAACAGATGGATCCCTTTACTCAGCGGCAGTGCAAGCCTA < 41bp 0.747737266597395 0.51310387305413 0.47543877 0.14310724 prediction 0.469266787086532 Functional Loss - RTF1 ENSG00000137815 CDS Human protein_coding chr15:41770789 chr15:41770792 nonsynonymous SNV 0.852 3 24 hm5C_associated_SNPs_72168 0 0 1 0 2 RTF1 chr15:41770746 3'AG 41770746 Downstream 47bp
chr15 41770792 41770792 1 + G A UCEC 41770789 + 41770769 41770809 41 CCAACAGATGGATCCCTTTACTCGGCGGCAGTGCAAGCCTA CCAACAGATGGATCCCTTTACTCAGCGGCAGTGCAAGCCTA < 41bp 0.747737266597395 0.51310387305413 0.47543877 0.14310724 prediction 0.469266787086532 Functional Loss - RTF1 ENSG00000137815 CDS Human protein_coding chr15:41770789 chr15:41770792 nonsynonymous SNV 0.852 3 24 hm5C_associated_SNPs_72168 0 0 1 0 2 RTF1 chr15:41770823 5'GT 41770823 Upstream 32bp
chr7 128444785 128444785 1 + C T COAD 128444783 + 128444763 128444803 41 CAGGAGAGCAACAGCAGCCTCACGGGGCAGCTTGCAGATCT CAGGAGAGCAACAGCAGCCTCATGGGGCAGCTTGCAGATCT < 41bp 0.824429463624175 0.589796184866285 0.90076435 0.89476 prediction 0.469266557515781 Functional Loss - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128444783 chr7:128444785 nonsynonymous SNV 0.986 1 23 hm5C_associated_SNPs_72169 0 0 1 0 2 CCDC136 chr7:128444704 3'AG 128444704 Downstream 82bp
chr7 128444785 128444785 1 + C T COAD 128444783 + 128444763 128444803 41 CAGGAGAGCAACAGCAGCCTCACGGGGCAGCTTGCAGATCT CAGGAGAGCAACAGCAGCCTCATGGGGCAGCTTGCAGATCT < 41bp 0.824429463624175 0.589796184866285 0.90076435 0.89476 prediction 0.469266557515781 Functional Loss - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128444783 chr7:128444785 nonsynonymous SNV 0.986 1 23 hm5C_associated_SNPs_72169 0 0 1 0 2 CCDC136 chr7:128444815 5'GT 128444815 Upstream 31bp
chr7 142563239 142563239 1 + G A LUSC 142563236 + 142563216 142563256 41 CTCTGCCTCCTCAGCCTGCCCACGGGGGCTCTATAAGTCTT CTCTGCCTCCTCAGCCTGCCCACAGGGGCTCTATAAGTCTT < 41bp 0.767082278667614 0.532453410078758 0.80234575 0.23358431 prediction 0.469257737177712 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142563236 chr7:142563239 nonsynonymous SNV 0.106 0 24 hm5C_associated_SNPs_72170 0 0 1 0 1 EPHB6 chr7:142563230 3'AG 142563230 Downstream 10bp
chr19 19168390 19168390 1 + G C LUSC 19168389 + 19168369 19168409 41 CGGGACCTGGGTTGTCATGTCGAGCTCCGAGAGCTGTGGAC CGGGACCTGGGTTGTCATGTCCAGCTCCGAGAGCTGTGGAC < 41bp 0.73462815771244 0.431879535370783 0.57666314 0.30397564 prediction 0.469256315424881 Functional Loss - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19168389 chr19:19168390 nonsynonymous SNV 0.014 2 22 hm5C_associated_SNPs_72171 0 0 1 0 1 ARMC6 chr19:19168467 5'GT 19168467 Upstream 78bp
chr19 4207815 4207815 1 + G A UCEC 4207812 + 4207792 4207832 41 TGGCCTGTGAGGGGGCCAGCCCCGAAACAGTGGAGGTCCTG TGGCCTGTGAGGGGGCCAGCCCCAAAACAGTGGAGGTCCTG < 41bp 0.736143908858631 0.501522080867437 0.39080265 0.34171686 prediction 0.469243655982387 Functional Loss - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4207812 chr19:4207815 nonsynonymous SNV 0.873 2 24 hm5C_associated_SNPs_72173 0 0 0 0 1 ANKRD24 chr19:4207778 3'AG 4207778 Downstream 38bp
chr2 238728941 238728941 1 + C T HNSC 238728939 + 238728919 238728959 41 TTCACTATCAGATGTGTCGTCGCCATTGTTGTGATATTTAC TTCACTATCAGATGTGTCGTCGTCATTGTTGTGATATTTAC < 41bp 0.734609448794978 0.453158995102974 0.8641653 0.33764663 prediction 0.469218897589956 Functional Loss - RBM44 ENSG00000177483 CDS Human protein_coding chr2:238728939 chr2:238728941 synonymous SNV . 0 23 hm5C_associated_SNPs_72179 0 0 0 0 1 RBM44 chr2:238728994 5'GT 238728994 Upstream 54bp
chr12 4385251 4385251 1 + G A SKCM 4385248 + 4385228 4385268 41 GACCGTTTCTTGGCTGGGGTCCCGACTCCGAAGTCCCATCT GACCGTTTCTTGGCTGGGGTCCCAACTCCGAAGTCCCATCT < 41bp 0.753303100198113 0.518694201471866 0.13531101 0.18135962 prediction 0.469217797452494 Functional Loss - CCND2 ENSG00000118971 CDS Human protein_coding chr12:4385248 chr12:4385251 synonymous SNV . 0 24 hm5C_associated_SNPs_72180 0 0 1 0 1 CCND2 chr12:4385171 3'AG 4385171 Downstream 81bp
chr1 32670821 32670821 1 + C T COAD 32670819 + 32670799 32670839 41 AAGCTGCACCTGGCCGAGAACGCCGAGCCTGAGGAGCAGTC AAGCTGCACCTGGCCGAGAACGTCGAGCCTGAGGAGCAGTC < 41bp 0.801829199493965 0.567221682794012 0.7459388 0.4454698 prediction 0.469215033399906 Functional Loss - CCDC28B ENSG00000160050 CDS Human protein_coding chr1:32670819 chr1:32670821 nonsynonymous SNV 0.987 0 23 hm5C_associated_SNPs_72182 0 0 1 0 1 CCDC28B chr1:32670795 3'AG 32670795 Downstream 27bp
chr3 50223738 50223738 1 + G T LUAD 50223736 + 50223716 50223756 41 GGAGCCGCCGGCAGGACGTCCGGCACGGAAACCCCATCAGG GGAGCCGCCGGCAGGACGTCCGTCACGGAAACCCCATCAGG < 41bp 0.734602392082368 0.375174084692894 0.14454558 0.12071195 prediction 0.469204784164737 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50223736 chr3:50223738 synonymous SNV . 0 23 hm5C_associated_SNPs_72184 0 0 1 0 2 SEMA3F chr3:50223714 3'AG 50223714 Downstream 25bp
chr3 50223738 50223738 1 + G T LUAD 50223736 + 50223716 50223756 41 GGAGCCGCCGGCAGGACGTCCGGCACGGAAACCCCATCAGG GGAGCCGCCGGCAGGACGTCCGTCACGGAAACCCCATCAGG < 41bp 0.734602392082368 0.375174084692894 0.14454558 0.12071195 prediction 0.469204784164737 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50223736 chr3:50223738 synonymous SNV . 0 23 hm5C_associated_SNPs_72184 0 0 1 0 2 SEMA3F chr3:50223781 5'GT 50223781 Upstream 44bp
chr9 136265601 136265601 1 + G T UCEC 136265599 + 136265579 136265619 41 ACGACCATGGAGCTACATGACAGGGTCCTCGATGTCCAGCT ACGACCATGGAGCTACATGACATGGTCCTCGATGTCCAGCT < 41bp 0.911515761306365 0.676918820403281 0.8273734 0.04191503 prediction 0.469193881806167 Functional Loss - STKLD1 ENSG00000198870 CDS Human protein_coding chr9:136265599 chr9:136265601 nonsynonymous SNV 0.007 1 23 hm5C_associated_SNPs_72185 0 0 0 2 2 STKLD1 chr9:136265541 3'AG 136265541 Downstream 61bp
chr9 136265601 136265601 1 + G T UCEC 136265599 + 136265579 136265619 41 ACGACCATGGAGCTACATGACAGGGTCCTCGATGTCCAGCT ACGACCATGGAGCTACATGACATGGTCCTCGATGTCCAGCT < 41bp 0.911515761306365 0.676918820403281 0.8273734 0.04191503 prediction 0.469193881806167 Functional Loss - STKLD1 ENSG00000198870 CDS Human protein_coding chr9:136265599 chr9:136265601 nonsynonymous SNV 0.007 1 23 hm5C_associated_SNPs_72185 0 0 0 2 2 STKLD1 chr9:136265657 5'GT 136265657 Upstream 57bp
chr9 91606015 91606015 1 + G T UCEC 91606012 + 91605992 91606032 41 CGACAGGCGCCCGCCCAAGCCCAGACCTCGGACCTGGTTCC CGACAGGCGCCCGCCCAAGCCCATACCTCGGACCTGGTTCC < 41bp 0.734586446489902 0.336625164083077 0.29687223 0.1494394 prediction 0.469172892979805 Functional Loss - C9orf47 ENSG00000186354 CDS Human protein_coding chr9:91606012 chr9:91606015 nonsynonymous SNV 0.004 2 24 hm5C_associated_SNPs_72188 0 0 0 0 1 C9orf47 chr9:91606099 5'GT 91606099 Upstream 85bp
chr1 16350333 16350333 1 + G A SKCM 16350330 + 16350310 16350350 41 TAAAGCAGAAGGTGTTCCGCCTGGGAGAAGACTGGTACTTC TAAAGCAGAAGGTGTTCCGCCTGAGAGAAGACTGGTACTTC < 41bp 0.7479383355327 0.513354050013632 0.3988361 0.18650657 prediction 0.469168571038137 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16350330 chr1:16350333 nonsynonymous SNV 0.122 2 24 hm5C_associated_SNPs_72189 0 0 0 0 2 CLCNKA chr1:16350295 3'AG 16350295 Downstream 39bp
chr1 16350333 16350333 1 + G A SKCM 16350330 + 16350310 16350350 41 TAAAGCAGAAGGTGTTCCGCCTGGGAGAAGACTGGTACTTC TAAAGCAGAAGGTGTTCCGCCTGAGAGAAGACTGGTACTTC < 41bp 0.7479383355327 0.513354050013632 0.3988361 0.18650657 prediction 0.469168571038137 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16350330 chr1:16350333 nonsynonymous SNV 0.122 2 24 hm5C_associated_SNPs_72189 0 0 0 0 2 CLCNKA chr1:16350423 5'GT 16350423 Upstream 91bp
chr5 145834749 145834749 1 + C T UCEC 145834747 + 145834727 145834767 41 GCGAGGCCCTCCTCCACCACCACGGCCGCCCTTTGGACGTC GCGAGGCCCTCCTCCACCACCATGGCCGCCCTTTGGACGTC < 41bp 0.813105209646557 0.578529137431344 0.64793575 0.4129767 prediction 0.469152144430427 Functional Loss - TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145834747 chr5:145834749 nonsynonymous SNV 0.966 3 23 hm5C_associated_SNPs_72191 0 0 1 0 1 TCERG1 chr5:145834844 5'GT 145834844 Upstream 96bp
chr11 67174357 67174357 1 + C T rs142410416 67174355 + 67174335 67174375 41 TGCTGCGGCGGCTGCTTCCGCACGTGCACAAGCACCTGCAG TGCTGCGGCGGCTGCTTCCGCATGTGCACAAGCACCTGCAG < 41bp 0.752466952135146 0.517892355563139 0.7929193 0.65213567 prediction 0.469149193144014 Functional Loss - TBC1D10C ENSG00000175463 CDS Human protein_coding chr11:67174355 chr11:67174357 synonymous SNV . 0 23 hm5C_associated_SNPs_72194 0 0 0 0 1 TBC1D10C chr11:67174298 3'AG 67174298 Downstream 60bp
chr5 126746165 126746165 1 + C T rs142947482 126746163 + 126746143 126746183 41 TCAACGGAGGGAAGTGTTACCACGTGAGCGGCGCATGCCTC TCAACGGAGGGAAGTGTTACCATGTGAGCGGCGCATGCCTC < 41bp 0.82166462125953 0.587099774465404 0.71425474 0.7656957 prediction 0.469129693588253 Functional Loss - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126746163 chr5:126746165 synonymous SNV . 0 23 hm5C_associated_SNPs_72198 2 0 0 0 1 MEGF10 chr5:126746081 3'AG 126746081 Downstream 85bp
chr12 133277861 133277861 1 + C T HNSC 133277859 + 133277839 133277879 41 AAAGACGCCTCAGCCTTCGCCGCCAAGATGAGGGGGGGCTT AAAGACGCCTCAGCCTTCGCCGTCAAGATGAGGGGGGGCTT < 41bp 0.835100402368583 0.600538382109832 0.5647303 0.1951428 prediction 0.469124040517502 Functional Loss - PXMP2 ENSG00000176894;ENSG00000256632 CDS Human other chr12:133277859 chr12:133277861 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_72199 0 0 0 0 2 PXMP2 chr12:133277836 3'AG 133277836 Downstream 26bp
chr12 133277861 133277861 1 + C T HNSC 133277859 + 133277839 133277879 41 AAAGACGCCTCAGCCTTCGCCGCCAAGATGAGGGGGGGCTT AAAGACGCCTCAGCCTTCGCCGTCAAGATGAGGGGGGGCTT < 41bp 0.835100402368583 0.600538382109832 0.5647303 0.1951428 prediction 0.469124040517502 Functional Loss - PXMP2 ENSG00000176894;ENSG00000256632 CDS Human other chr12:133277859 chr12:133277861 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_72199 0 0 0 0 2 PXMP2 chr12:133277955 5'GT 133277955 Upstream 95bp
chr2 241500227 241500227 1 - C G rs571769896 241500231 - 241500211 241500251 41 GTTGACGCACAGCGTGACTCCCGCGCGCGCCAGCTGCTCCT GTTGACGCACAGCGTGACTCCCGCCCGCGCCAGCTGCTCCT < 41bp 0.831387509147575 0.596826346595039 0.15037423 0.11136398 prediction 0.469122325105072 Functional Loss - ANKMY1;DUSP28 ENSG00000144504;ENSG00000188542 CDS Human other chr2:241500231 chr2:241500227 synonymous SNV . 0 25 hm5C_associated_SNPs_72200 0 0 0 0 1 ANKMY1;DUSP28 chr2:241500148 5'GT 241500148 Upstream 80bp
chr20 56138663 56138663 1 + G A UCEC 56138660 + 56138640 56138680 41 CTGAGGGTGAGAAGAAGTACCTGGCGGCCGCATTTCCCAGC CTGAGGGTGAGAAGAAGTACCTGACGGCCGCATTTCCCAGC < 41bp 0.758079022149092 0.523522834760429 0.4888776 0.1469593 prediction 0.469112374777325 Functional Loss - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56138660 chr20:56138663 nonsynonymous SNV 0.745 1 24 hm5C_associated_SNPs_72203 0 0 1 0 1 PCK1 chr20:56138621 3'AG 56138621 Downstream 43bp
chr3 133478078 133478078 1 + G A SKCM 133478075 + 133478055 133478095 41 AGTGGTGTGCGCTGAGCCACCACGAGAGGCTCAAGTGTGAT AGTGGTGTGCGCTGAGCCACCACAAGAGGCTCAAGTGTGAT < 41bp 0.754187422803328 0.519637725642096 0.43926015 0.30060768 prediction 0.469099394322464 Functional Loss - TF ENSG00000091513 CDS Human protein_coding chr3:133478075 chr3:133478078 nonsynonymous SNV 0.011 4 24 hm5C_associated_SNPs_72204 0 0 1 0 2 TF chr3:133478019 3'AG 133478019 Downstream 60bp
chr3 133478078 133478078 1 + G A SKCM 133478075 + 133478055 133478095 41 AGTGGTGTGCGCTGAGCCACCACGAGAGGCTCAAGTGTGAT AGTGGTGTGCGCTGAGCCACCACAAGAGGCTCAAGTGTGAT < 41bp 0.754187422803328 0.519637725642096 0.43926015 0.30060768 prediction 0.469099394322464 Functional Loss - TF ENSG00000091513 CDS Human protein_coding chr3:133478075 chr3:133478078 nonsynonymous SNV 0.011 4 24 hm5C_associated_SNPs_72204 0 0 1 0 2 TF chr3:133478173 5'GT 133478173 Upstream 96bp
chr10 134014412 134014412 1 + G A rs11146246 134014409 + 134014389 134014429 41 ACTGCCCAGAAGGCTGTGGGCAAGGACAACTTCGCGCTGAT ACTGCCCAGAAGGCTGTGGGCAAAGACAACTTCGCGCTGAT < 41bp 0.752897084487968 0.518347538811318 0.80269027 0.6625151 prediction 0.4690990913533 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134014409 chr10:134014412 synonymous SNV . 0 24 hm5C_associated_SNPs_72205 0 0 0 0 2 DPYSL4 chr10:134014346 3'AG 134014346 Downstream 67bp
chr10 134014412 134014412 1 + G A rs11146246 134014409 + 134014389 134014429 41 ACTGCCCAGAAGGCTGTGGGCAAGGACAACTTCGCGCTGAT ACTGCCCAGAAGGCTGTGGGCAAAGACAACTTCGCGCTGAT < 41bp 0.752897084487968 0.518347538811318 0.80269027 0.6625151 prediction 0.4690990913533 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134014409 chr10:134014412 synonymous SNV . 0 24 hm5C_associated_SNPs_72205 0 0 0 0 2 DPYSL4 chr10:134014487 5'GT 134014487 Upstream 76bp
chr19 16437717 16437717 1 + C T CESC 16437715 + 16437695 16437735 41 CGGCTGCGGCTGGAAGTTTGCGCGCTCAGACGAGCTCACGC CGGCTGCGGCTGGAAGTTTGCGTGCTCAGACGAGCTCACGC < 41bp 0.755721152586789 0.521172636300233 0.6882767 0.76515484 prediction 0.469097032573112 Functional Loss - KLF2 ENSG00000127528 CDS Human protein_coding chr19:16437715 chr19:16437717 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_72206 0 0 0 0 1 KLF2 chr19:16437667 3'AG 16437667 Downstream 51bp
chr9 4844532 4844532 1 + G T LUSC 4844530 + 4844510 4844550 41 CCTTTGTATCTCCAGGTCTCCGGGCTTTGGGTTGTCACTGG CCTTTGTATCTCCAGGTCTCCGTGCTTTGGGTTGTCACTGG < 41bp 0.734546620970637 0.389255974735326 0.9255779 0.17572832 prediction 0.469093241941274 Functional Loss - RCL1 ENSG00000120158 CDS Human protein_coding chr9:4844530 chr9:4844532 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_72208 0 0 1 0 1 RCL1 chr9:4844525 3'AG 4844525 Downstream 8bp
chr17 42427072 42427072 1 + G A BLCA 42427069 + 42427049 42427089 41 GGATGGCCATCACTGCTGCCCACGGGGCTTCCACTGCAGTG GGATGGCCATCACTGCTGCCCACAGGGCTTCCACTGCAGTG < 41bp 0.782210788657784 0.547666323589682 0.41996622 0.16173062 prediction 0.469088930136204 Functional Loss - GRN ENSG00000030582 CDS Human protein_coding chr17:42427069 chr17:42427072 nonsynonymous SNV 0.992 0 24 hm5C_associated_SNPs_72209 0 0 1 0 2 GRN chr17:42427035 3'AG 42427035 Downstream 38bp
chr17 42427072 42427072 1 + G A BLCA 42427069 + 42427049 42427089 41 GGATGGCCATCACTGCTGCCCACGGGGCTTCCACTGCAGTG GGATGGCCATCACTGCTGCCCACAGGGCTTCCACTGCAGTG < 41bp 0.782210788657784 0.547666323589682 0.41996622 0.16173062 prediction 0.469088930136204 Functional Loss - GRN ENSG00000030582 CDS Human protein_coding chr17:42427069 chr17:42427072 nonsynonymous SNV 0.992 0 24 hm5C_associated_SNPs_72209 0 0 1 0 2 GRN chr17:42427119 5'GT 42427119 Upstream 48bp
chr8 87440008 87440008 1 + G T GBM 87440005 + 87439985 87440025 41 AATCTCAGCGGAACCAATTGCAGGGAGCTATGCAACAGTTT AATCTCAGCGGAACCAATTGCAGTGAGCTATGCAACAGTTT < 41bp 0.734543813873003 0.349636608140225 0.91111445 0.34025535 prediction 0.469087627746007 Functional Loss - WWP1 ENSG00000123124 CDS Human protein_coding chr8:87440005 chr8:87440008 stopgain 1.000 1 24 hm5C_associated_SNPs_72210 0 0 1 0 1 WWP1 chr8:87440046 5'GT 87440046 Upstream 39bp
chr17 65040965 65040965 1 + G A SKCM 65040962 + 65040942 65040982 41 ATTTGTACCAAGCGCATCCCCATGGACGACAGCAAGACCTG ATTTGTACCAAGCGCATCCCCATAGACGACAGCAAGACCTG < 41bp 0.760524076411468 0.52598104119329 0.64298826 0.37298018 prediction 0.469086070436355 Functional Loss - CACNG1 ENSG00000108878 CDS Human protein_coding chr17:65040962 chr17:65040965 nonsynonymous SNV 0.265 0 24 hm5C_associated_SNPs_72211 0 0 0 0 1 CACNG1 chr17:65041005 5'GT 65041005 Upstream 41bp
chr18 2847928 2847928 1 + G A UCEC 2847925 + 2847905 2847945 41 AGATGCCCTGTCCGTCGGCGCTGGTGTAAGTCCTGGAGCCG AGATGCCCTGTCCGTCGGCGCTGATGTAAGTCCTGGAGCCG < 41bp 0.734540967397813 0.480574493572526 0.6823579 0.4603629 prediction 0.469081934795626 Functional Loss - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2847925 chr18:2847928 nonsynonymous SNV 0.959 0 24 hm5C_associated_SNPs_72213 0 0 0 0 1 EMILIN2 chr18:2847929 5'GT 2847929 Upstream 2bp
chr19 56170693 56170693 1 + G A UCEC 56170690 + 56170670 56170710 41 CCGGGACCAGCGGAGCGCCTCCCGGGACAGGCGACGACGCA CCGGGACCAGCGGAGCGCCTCCCAGGACAGGCGACGACGCA < 41bp 0.747858003748717 0.513325605651196 0.6930778 0.41629517 prediction 0.469064796195042 Functional Loss - U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56170690 chr19:56170693 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_72217 0 0 1 0 1 U2AF2 chr19:56170711 5'GT 56170711 Upstream 19bp
chr7 128845480 128845480 1 + G A CESC 128845477 + 128845457 128845497 41 TTCGTGGCTGACTGGCGGAACTCGAATCGCTACCCTGCTGT TTCGTGGCTGACTGGCGGAACTCAAATCGCTACCCTGCTGT < 41bp 0.734531101847307 0.484064215574167 0.85391736 0.39785683 prediction 0.469062203694615 Functional Loss - SMO ENSG00000128602 CDS Human protein_coding chr7:128845477 chr7:128845480 synonymous SNV . 0 24 hm5C_associated_SNPs_72218 0 0 1 0 1 SMO chr7:128845451 3'AG 128845451 Downstream 30bp
chr7 128845479 128845479 1 + C T STAD 128845477 + 128845457 128845497 41 TTCGTGGCTGACTGGCGGAACTCGAATCGCTACCCTGCTGT TTCGTGGCTGACTGGCGGAACTTGAATCGCTACCCTGCTGT < 41bp 0.734531101847307 0.439962818880161 0.85391736 0.44340673 prediction 0.469062203694615 Functional Loss - SMO ENSG00000128602 CDS Human protein_coding chr7:128845477 chr7:128845479 nonsynonymous SNV 0.992 3 23 hm5C_associated_SNPs_72219 0 0 1 0 1 SMO chr7:128845451 3'AG 128845451 Downstream 29bp
chr4 15054166 15054166 1 + C T COAD 15054164 + 15054144 15054184 41 AGAGCGAATAGAACGCTTCTCTCGAAAAGTTTTTGTTGGTG AGAGCGAATAGAACGCTTCTCTTGAAAAGTTTTTGTTGGTG < 41bp 0.734530377603704 0.439126243235555 0.91222703 0.107159644 prediction 0.469060755207408 Functional Loss - CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15054164 chr4:15054166 stopgain 1.000 1 23 hm5C_associated_SNPs_72220 0 0 0 0 1 CPEB2 chr4:15054208 5'GT 15054208 Upstream 43bp
chr4 15054167 15054167 1 + G T STAD 15054164 + 15054144 15054184 41 AGAGCGAATAGAACGCTTCTCTCGAAAAGTTTTTGTTGGTG AGAGCGAATAGAACGCTTCTCTCTAAAAGTTTTTGTTGGTG < 41bp 0.734530377603704 0.356768236421605 0.91222703 0.9434365 prediction 0.469060755207408 Functional Loss - CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15054164 chr4:15054167 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_72221 0 0 0 0 1 CPEB2 chr4:15054208 5'GT 15054208 Upstream 42bp
chr5 1816029 1816029 1 + A T LUAD 1816025 + 1816005 1816045 41 TCCAGTTCAGACAGCACCACCACTAGAGCGTGTGGCACGCC TCCAGTTCAGACAGCACCACCACTTGAGCGTGTGGCACGCC < 41bp 0.734528973651179 0.400259181443406 0.1741099 0.1403234 prediction 0.469057947302359 Functional Loss - NDUFS6 ENSG00000145494 CDS Human protein_coding chr5:1816025 chr5:1816029 stoploss 0.193 0 25 hm5C_associated_SNPs_72223 0 0 1 0 1 NDUFS6 chr5:1815965 3'AG 1815965 Downstream 65bp
chr22 37364077 37364077 1 + A C rs192411481 37364076 + 37364056 37364096 41 GGAGTGCAGTAGCGCGATCTCAGCTCACTGCAACCTCCGCC GGAGTGCAGTAGCGCGATCTCCGCTCACTGCAACCTCCGCC < 41bp 0.749683833764233 0.515158522082293 0.18434319 0.12907243 prediction 0.46905062336388 Functional Loss - LL22NC01-81G9.3 ENSG00000215403 ncRNA_exonic Human antisense chr22:37364076 chr22:37364077 . . 0 22 hm5C_associated_SNPs_72225 0 0 0 0 1 LL22NC01-81G9.3 chr22:37364027 3'AG 37364027 Downstream 51bp
chr1 177225145 177225145 1 + G A SKCM 177225142 + 177225122 177225162 41 CCTCTTGCCCCAGAGTTTATCCGGAACATTCGCCTCCTTGG CCTCTTGCCCCAGAGTTTATCCGAAACATTCGCCTCCTTGG < 41bp 0.76592310972344 0.531403186371704 0.9227031 0.839577 prediction 0.469039846703473 Functional Loss - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177225142 chr1:177225145 synonymous SNV . 0 24 hm5C_associated_SNPs_72229 0 0 0 0 1 BRINP2 chr1:177225055 3'AG 177225055 Downstream 91bp
chr12 13208861 13208861 1 + C T COAD 13208859 + 13208839 13208879 41 ATCTGCACAGCACCTGGAGCCGCCACTTGGGCTCCCAGGGA ATCTGCACAGCACCTGGAGCCGTCACTTGGGCTCCCAGGGA < 41bp 0.838663255393526 0.604148882674326 0.9171209 0.7017052 prediction 0.4690287454384 Functional Loss - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13208859 chr12:13208861 synonymous SNV . 0 23 hm5C_associated_SNPs_72232 0 0 0 0 1 FAM234B chr12:13208880 5'GT 13208880 Upstream 20bp
chr5 132015483 132015483 1 + T C LAML 132015482 + 132015462 132015502 41 CAGCCACCATGAGAAGGACACTCGCTGCCTGGGTGCGACTG CAGCCACCATGAGAAGGACACCCGCTGCCTGGGTGCGACTG < 41bp 0.776455006085866 0.541945970226642 0.2270926 0.21112502 prediction 0.469018071718448 Functional Loss - IL4 ENSG00000113520 CDS Human protein_coding chr5:132015482 chr5:132015483 synonymous SNV 0.001 0 22 hm5C_associated_SNPs_72234 0 0 0 0 2 IL4 chr5:132015406 3'AG 132015406 Downstream 78bp
chr5 132015483 132015483 1 + T C LAML 132015482 + 132015462 132015502 41 CAGCCACCATGAGAAGGACACTCGCTGCCTGGGTGCGACTG CAGCCACCATGAGAAGGACACCCGCTGCCTGGGTGCGACTG < 41bp 0.776455006085866 0.541945970226642 0.2270926 0.21112502 prediction 0.469018071718448 Functional Loss - IL4 ENSG00000113520 CDS Human protein_coding chr5:132015482 chr5:132015483 synonymous SNV 0.001 0 22 hm5C_associated_SNPs_72234 0 0 0 0 2 IL4 chr5:132015582 5'GT 132015582 Upstream 100bp
chr6 144179072 144179072 1 + G C LUSC 144179071 + 144179051 144179091 41 GGAAACAAAGAGTCGCTTCACGGAGTATTCGATGACTTCCT GGAAACAAAGAGTCGCTTCACCGAGTATTCGATGACTTCCT < 41bp 0.794677028542324 0.560172212602365 0.9064779 0.20276141 prediction 0.469009631879917 Functional Loss - LTV1 ENSG00000135521 CDS Human protein_coding chr6:144179071 chr6:144179072 synonymous SNV . 0 22 hm5C_associated_SNPs_72235 0 0 1 0 1 LTV1 chr6:144179144 5'GT 144179144 Upstream 73bp
chr19 758698 758698 1 + G T LIHC 758696 + 758676 758716 41 CGCCAGATGAGAACTCTGACCAGAACTCCAGGAGCTCCTCC CGCCAGATGAGAACTCTGACCATAACTCCAGGAGCTCCTCC < 41bp 0.734504290740845 0.384007086992204 0.11110285 0.034207225 prediction 0.469008581481689 Functional Loss - MISP ENSG00000099812 CDS Human protein_coding chr19:758696 chr19:758698 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_72236 0 0 0 0 1 MISP chr19:758726 5'GT 758726 Upstream 29bp
chr19 52877654 52877654 1 + G T LUSC 52877652 + 52877632 52877672 41 ATAGCAAACAATCCAGGTGGCAGGGAGTGCATCAAAGGTGT ATAGCAAACAATCCAGGTGGCATGGAGTGCATCAAAGGTGT < 41bp 0.899505943408639 0.66500215597714 0.81084776 0.4701753 prediction 0.469007574862999 Functional Loss - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52877652 chr19:52877654 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_72237 0 0 1 0 2 ZNF880 chr19:52877680 5'GT 52877680 Upstream 27bp
chr19 52877654 52877654 1 + G T LUSC 52877652 + 52877632 52877672 41 ATAGCAAACAATCCAGGTGGCAGGGAGTGCATCAAAGGTGT ATAGCAAACAATCCAGGTGGCATGGAGTGCATCAAAGGTGT < 41bp 0.899505943408639 0.66500215597714 0.81084776 0.4701753 prediction 0.469007574862999 Functional Loss - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52877652 chr19:52877654 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_72237 0 0 1 0 2 ZNF880 chr19:52877737 5'GT 52877737 Upstream 84bp
chr17 35298152 35298152 1 + C T COAD 35298150 + 35298130 35298170 41 CCACATCCGCGAGCAGCTGGCGCAGGAGACCGGCCTCAACA CCACATCCGCGAGCAGCTGGCGTAGGAGACCGGCCTCAACA < 41bp 0.786005766045791 0.551503169457464 0.84155804 0.7242849 prediction 0.469005193176655 Functional Loss - LHX1 ENSG00000132130 CDS Human other chr17:35298150 chr17:35298152 stopgain 0.991 1 23 hm5C_associated_SNPs_72238 0 0 0 0 1 LHX1 chr17:35298184 5'GT 35298184 Upstream 33bp
chr17 72345451 72345451 1 + G T LUAD 72345448 + 72345428 72345468 41 CAGACTGGGCGGGGCCAGGCCCGGGGCCGGCAGGATCGGGG CAGACTGGGCGGGGCCAGGCCCGTGGCCGGCAGGATCGGGG < 41bp 0.734500320855504 0.319779657391082 0.91960776 0.42911792 prediction 0.469000641711007 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72345448 chr17:72345451 synonymous SNV . 0 24 hm5C_associated_SNPs_72240 0 0 0 0 1 KIF19 chr17:72345488 5'GT 72345488 Upstream 38bp
chr1 40432526 40432526 1 + G A LAML 40432523 + 40432503 40432543 41 TCTGAGCCAATCGCCTACTTCCGGGGCCTACGGCTGGTCAT TCTGAGCCAATCGCCTACTTCCGAGGCCTACGGCTGGTCAT < 41bp 0.778336695713379 0.543856956864086 0.9578472 0.9338527 prediction 0.468959477698587 Functional Loss - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40432523 chr1:40432526 synonymous SNV . 0 24 hm5C_associated_SNPs_72248 0 0 0 0 2 MFSD2A chr1:40432483 3'AG 40432483 Downstream 44bp
chr1 40432526 40432526 1 + G A LAML 40432523 + 40432503 40432543 41 TCTGAGCCAATCGCCTACTTCCGGGGCCTACGGCTGGTCAT TCTGAGCCAATCGCCTACTTCCGAGGCCTACGGCTGGTCAT < 41bp 0.778336695713379 0.543856956864086 0.9578472 0.9338527 prediction 0.468959477698587 Functional Loss - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40432523 chr1:40432526 synonymous SNV . 0 24 hm5C_associated_SNPs_72248 0 0 0 0 2 MFSD2A chr1:40432604 5'GT 40432604 Upstream 79bp
chr6 158483196 158483196 1 + G A GBM 158483193 + 158483173 158483213 41 AAAGGGGGAGAACGTCAGTCCACGGTGAGGCTCGCTGCGCA AAAGGGGGAGAACGTCAGTCCACAGTGAGGCTCGCTGCGCA < 41bp 0.766868379732723 0.532393503279654 0.2654583 0.060017496 prediction 0.468949752906139 Functional Loss - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158483193 chr6:158483196 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_72250 0 0 1 0 2 SYNJ2 chr6:158483196 5'GT 158483196 Upstream 1bp
chr6 158483196 158483196 1 + G A GBM 158483193 + 158483173 158483213 41 AAAGGGGGAGAACGTCAGTCCACGGTGAGGCTCGCTGCGCA AAAGGGGGAGAACGTCAGTCCACAGTGAGGCTCGCTGCGCA < 41bp 0.766868379732723 0.532393503279654 0.2654583 0.060017496 prediction 0.468949752906139 Functional Loss - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158483193 chr6:158483196 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_72250 0 0 1 0 2 SYNJ2 chr6:158483253 5'GT 158483253 Upstream 58bp
chr8 19805748 19805748 1 + C T BRCA 19805746 + 19805726 19805766 41 GCCCTAAGGACCCCTGAAGACACAGCTGAGGACACTTGCCA GCCCTAAGGACCCCTGAAGACATAGCTGAGGACACTTGCCA < 41bp 0.734474711558932 0.453597330689907 0.06711155 0.06817514 prediction 0.468949423117865 Functional Loss - LPL ENSG00000175445 CDS Human protein_coding chr8:19805746 chr8:19805748 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_72251 0 0 1 0 1 LPL chr8:19805691 3'AG 19805691 Downstream 58bp
chr1 222920036 222920036 1 + A C STAD 222920035 + 222920015 222920055 41 AGGAAGAGGAAAAGGAGGAGCAGAGCACAAATTCAACACTT AGGAAGAGGAAAAGGAGGAGCCGAGCACAAATTCAACACTT < 41bp 0.73447209323736 0.481788866148079 0.08723143 0.055054843 prediction 0.468944186474721 Functional Loss - FAM177B ENSG00000197520 CDS Human protein_coding chr1:222920035 chr1:222920036 nonsynonymous SNV 0.025 0 22 hm5C_associated_SNPs_72252 0 0 0 2 1 FAM177B chr1:222920061 5'GT 222920061 Upstream 26bp
chr19 55174518 55174518 1 + C T SKCM 55174516 + 55174496 55174536 41 CCTTCACGGCTCTGCTCTGCCTCGGTGAGATTTAAAGAGGG CCTTCACGGCTCTGCTCTGCCTTGGTGAGATTTAAAGAGGG < 41bp 0.76594884624887 0.531483862876508 0.114334404 0.13258988 prediction 0.468929966744724 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55174516 chr19:55174518 synonymous SNV . 0 23 hm5C_associated_SNPs_72254 0 0 0 0 1 LILRB4 chr19:55174519 5'GT 55174519 Upstream 2bp
chr4 156835507 156835507 1 + G T UCEC 156835505 + 156835485 156835525 41 AGTCTGAAGAAAAAGAGGAACAGGTGGCTGAATTTCAGAAG AGTCTGAAGAAAAAGAGGAACATGTGGCTGAATTTCAGAAG < 41bp 0.734457143738495 0.395114138615616 0.51615745 0.19246632 prediction 0.46891428747699 Functional Loss - TDO2 ENSG00000151790 CDS Human protein_coding chr4:156835505 chr4:156835507 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_72257 0 0 0 0 1 TDO2 chr4:156835475 3'AG 156835475 Downstream 33bp
chr20 33583205 33583205 1 + G A BLCA 33583202 + 33583182 33583222 41 TGATCAAGTCCAAGGTGCAGCTGGAGGGGAAGGTGAAGGAG TGATCAAGTCCAAGGTGCAGCTGAAGGGGAAGGTGAAGGAG < 41bp 0.754497546976538 0.520045742525978 0.37475634 0.3771598 prediction 0.46890360890112 Functional Loss - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33583202 chr20:33583205 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_72259 0 0 0 0 1 MYH7B chr20:33583139 3'AG 33583139 Downstream 67bp
chr13 48937009 48937009 1 + G T LUSC 48937006 + 48936986 48937026 41 ACACCCAGGCGAGGTCAGAACAGGAGTGCACGGATAGCAAA ACACCCAGGCGAGGTCAGAACAGTAGTGCACGGATAGCAAA < 41bp 0.913566967306819 0.679116430272052 0.73837703 0.24470422 prediction 0.468901074069535 Functional Loss - RB1 ENSG00000139687 CDS Human protein_coding chr13:48937006 chr13:48937009 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_72260 0 0 1 2 1 RB1 chr13:48936951 3'AG 48936951 Downstream 59bp
chr3 10261437 10261437 1 + T C SARC 10261436 + 10261416 10261456 41 TGCTCTGTGCCGTCGAGTACCTGCATGGTCTGGAGATCATC TGCTCTGTGCCGTCGAGTACCCGCATGGTCTGGAGATCATC < 41bp 0.81979924026487 0.585351205636228 0.7126131 0.15799123 prediction 0.468896069257285 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10261436 chr3:10261437 nonsynonymous SNV 0.819 3 22 hm5C_associated_SNPs_72261 0 0 0 0 1 IRAK2 chr3:10261473 5'GT 10261473 Upstream 37bp
chrX 208186 208186 1 + G A BLCA 208183 + 208163 208203 41 CAGGACACACTCACGGAAATCTCGGAGTGGCTGGAGCGGCA CAGGACACACTCACGGAAATCTCAGAGTGGCTGGAGCGGCA < 41bp 0.734444661444688 0.496783196621501 0.894356 0.41216102 prediction 0.468889322889376 Functional Loss - PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:208183 chrX:208186 synonymous SNV . 0 24 hm5C_associated_SNPs_72262 0 0 1 0 1 PLCXD1 chrX:208166 3'AG 208166 Downstream 21bp
chr19 17883491 17883491 1 + G T SARC 17883489 + 17883469 17883509 41 AAGCAGAACATCGAGAACGTCAGCGTGGAGATGCTACTCAG AAGCAGAACATCGAGAACGTCATCGTGGAGATGCTACTCAG < 41bp 0.734443311358587 0.377808450023861 0.3809788 0.1757726 prediction 0.468886622717173 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17883489 chr19:17883491 nonsynonymous SNV 0.750 1 23 hm5C_associated_SNPs_72263 0 0 1 0 2 FCHO1 chr19:17883454 3'AG 17883454 Downstream 38bp
chr19 17883491 17883491 1 + G T SARC 17883489 + 17883469 17883509 41 AAGCAGAACATCGAGAACGTCAGCGTGGAGATGCTACTCAG AAGCAGAACATCGAGAACGTCATCGTGGAGATGCTACTCAG < 41bp 0.734443311358587 0.377808450023861 0.3809788 0.1757726 prediction 0.468886622717173 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17883489 chr19:17883491 nonsynonymous SNV 0.750 1 23 hm5C_associated_SNPs_72263 0 0 1 0 2 FCHO1 chr19:17883550 5'GT 17883550 Upstream 60bp
chr19 4155013 4155013 1 + G A GBM 4155010 + 4154990 4155030 41 AGCTGGGCGAGGGCTGGGGTCACGTCAAGGACCAGGTGAGG AGCTGGGCGAGGGCTGGGGTCACATCAAGGACCAGGTGAGG < 41bp 0.755430555824152 0.520989075001227 0.8125081 0.85871947 prediction 0.468882961645851 Functional Loss - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4155010 chr19:4155013 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_72265 0 0 1 0 1 CREB3L3 chr19:4155024 5'GT 4155024 Upstream 12bp
chr11 121032985 121032985 1 + G T HNSC 121032982 + 121032962 121033002 41 CTGGACGGCTGCTACAGCCACAAGAAGTTCCAGCTGTGCGG CTGGACGGCTGCTACAGCCACAATAAGTTCCAGCTGTGCGG < 41bp 0.734441310426282 0.336231443808026 0.42898905 0.28969637 prediction 0.468882620852564 Functional Loss - TECTA ENSG00000109927 CDS Human protein_coding chr11:121032982 chr11:121032985 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_72266 0 0 0 0 1 TECTA chr11:121033079 5'GT 121033079 Upstream 95bp
chr21 44437080 44437080 1 + G A UCEC 44437077 + 44437057 44437097 41 GGAATTGTGGTGCCGGCGTCCGCGCTGCAGCAGGGAAACGT GGAATTGTGGTGCCGGCGTCCGCACTGCAGCAGGGAAACGT < 41bp 0.752655156132698 0.518214851742737 0.39918536 0.3226015 prediction 0.468880608779923 Functional Loss - PKNOX1 ENSG00000160199 CDS Human protein_coding chr21:44437077 chr21:44437080 synonymous SNV . 0 24 hm5C_associated_SNPs_72267 0 0 1 0 2 PKNOX1 chr21:44437018 3'AG 44437018 Downstream 63bp
chr21 44437080 44437080 1 + G A UCEC 44437077 + 44437057 44437097 41 GGAATTGTGGTGCCGGCGTCCGCGCTGCAGCAGGGAAACGT GGAATTGTGGTGCCGGCGTCCGCACTGCAGCAGGGAAACGT < 41bp 0.752655156132698 0.518214851742737 0.39918536 0.3226015 prediction 0.468880608779923 Functional Loss - PKNOX1 ENSG00000160199 CDS Human protein_coding chr21:44437077 chr21:44437080 synonymous SNV . 0 24 hm5C_associated_SNPs_72267 0 0 1 0 2 PKNOX1 chr21:44437117 5'GT 44437117 Upstream 38bp
chr19 16910775 16910775 1 + G A rs150477676 16910772 + 16910752 16910792 41 CCCCCGTGAGCCTGCTGGCCCGCGGCGGGGCTTTGGTGGCA CCCCCGTGAGCCTGCTGGCCCGCAGCGGGGCTTTGGTGGCA < 41bp 0.796500346509397 0.56206175787937 0.38904712 0.095045626 prediction 0.468877177260055 Functional Loss - NWD1 ENSG00000188039 CDS Human protein_coding chr19:16910772 chr19:16910775 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_72268 0 0 0 0 1 NWD1 chr19:16910697 3'AG 16910697 Downstream 79bp
chr15 91492571 91492571 1 + G A SKCM 91492568 + 91492548 91492588 41 CAAGCCAAGCTTCGTGCGGGCTCGGGTGAAGAAGCTGCTGG CAAGCCAAGCTTCGTGCGGGCTCAGGTGAAGAAGCTGCTGG < 41bp 0.750058130538057 0.515635841592956 0.24525422 0.13853022 prediction 0.468844577890203 Functional Loss - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91492568 chr15:91492571 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_72274 0 0 1 0 1 UNC45A chr15:91492546 3'AG 91492546 Downstream 26bp
chr19 52857002 52857002 1 + G T LUSC 52856999 + 52856979 52857019 41 GGAGTGGAAATCCCTGGACCCTGGACAGAGGGCTTTATACA GGAGTGGAAATCCCTGGACCCTGTACAGAGGGCTTTATACA < 41bp 0.920254929185539 0.685833030527243 0.1421184 0.063415855 prediction 0.468843797316592 Functional Loss - ZNF610 ENSG00000167554 CDS Human protein_coding chr19:52856999 chr19:52857002 nonsynonymous SNV 0.012 0 24 hm5C_associated_SNPs_72275 0 0 0 0 2 ZNF610 chr19:52856935 3'AG 52856935 Downstream 68bp
chr19 52857002 52857002 1 + G T LUSC 52856999 + 52856979 52857019 41 GGAGTGGAAATCCCTGGACCCTGGACAGAGGGCTTTATACA GGAGTGGAAATCCCTGGACCCTGTACAGAGGGCTTTATACA < 41bp 0.920254929185539 0.685833030527243 0.1421184 0.063415855 prediction 0.468843797316592 Functional Loss - ZNF610 ENSG00000167554 CDS Human protein_coding chr19:52856999 chr19:52857002 nonsynonymous SNV 0.012 0 24 hm5C_associated_SNPs_72275 0 0 0 0 2 ZNF610 chr19:52857061 5'GT 52857061 Upstream 60bp
chr18 72178078 72178078 1 + G A COAD 72178075 + 72178055 72178095 41 CTGTCAACGTCCGATTCTGCCTCGAAGGCATGGAGGAGTCA CTGTCAACGTCCGATTCTGCCTCAAAGGCATGGAGGAGTCA < 41bp 0.754703266005169 0.520286960569496 0.86414874 0.28107196 prediction 0.468832610871346 Functional Loss - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72178075 chr18:72178078 nonsynonymous SNV 0.964 4 24 hm5C_associated_SNPs_72276 0 0 1 0 1 CNDP2 chr18:72178048 3'AG 72178048 Downstream 31bp
chr1 46033769 46033769 1 + G T OV 46033766 + 46033746 46033786 41 TGGTGGCTAAGGGGCTGGTGCAGGCGCTGGGCCTGTCCAAC TGGTGGCTAAGGGGCTGGTGCAGTCGCTGGGCCTGTCCAAC < 41bp 0.734415498518969 0.323122073572894 0.6190002 0.355753 prediction 0.468830997037938 Functional Loss - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46033766 chr1:46033769 nonsynonymous SNV 0.018 1 24 hm5C_associated_SNPs_72277 0 0 1 0 1 AKR1A1 chr1:46033849 5'GT 46033849 Upstream 81bp
chr2 55094019 55094019 1 + C T UCEC 55094017 + 55093997 55094037 41 GCTTGAAACTCCAGTTCATACACGGGTGGGTGGCCTGTCAT GCTTGAAACTCCAGTTCATACATGGGTGGGTGGCCTGTCAT < 41bp 0.801043223092917 0.566628922002048 0.16996104 0.42789468 prediction 0.468828602181739 Functional Loss - EML6 ENSG00000214595 CDS Human protein_coding chr2:55094017 chr2:55094019 synonymous SNV . 0 23 hm5C_associated_SNPs_72279 0 0 0 0 1 EML6 chr2:55094021 5'GT 55094021 Upstream 3bp
chr12 1889790 1889790 1 + C T STAD 1889788 + 1889768 1889808 41 CTGCCACTCAGAGGGGGTCTCTCGGCTCTTCTCTAAGTAAG CTGCCACTCAGAGGGGGTCTCTTGGCTCTTCTCTAAGTAAG < 41bp 0.734410192739713 0.455763564049105 0.0761784 0.04207468 prediction 0.468820385479427 Functional Loss - ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1889788 chr12:1889790 nonsynonymous SNV 0.937 2 23 hm5C_associated_SNPs_72281 0 0 1 0 1 ADIPOR2 chr12:1889803 5'GT 1889803 Upstream 14bp
chr19 10202204 10202204 1 + G A UCEC 10202201 + 10202181 10202221 41 CCTGCTACGGGTGCGGCTTCCCCGTGTATCCAACACGGATC CCTGCTACGGGTGCGGCTTCCCCATGTATCCAACACGGATC < 41bp 0.765804919920729 0.531401591228505 0.23042572 0.052848905 prediction 0.468806657384447 Functional Loss - C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10202201 chr19:10202204 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_72284 0 0 0 0 1 C19orf66 chr19:10202152 3'AG 10202152 Downstream 53bp
chr14 35782182 35782182 1 + G T UCEC 35782180 + 35782160 35782200 41 TGGGTTTAAAGCCACTGCAGCGGGAGTTAAACAAACTGAGT TGGGTTTAAAGCCACTGCAGCGTGAGTTAAACAAACTGAGT < 41bp 0.734401697607511 0.401564019728906 0.8990768 0.24841776 prediction 0.468803395215022 Functional Loss - PSMA6 ENSG00000100902 CDS Human protein_coding chr14:35782180 chr14:35782182 stopgain 0.997 1 23 hm5C_associated_SNPs_72286 0 0 1 0 2 PSMA6 chr14:35782087 3'AG 35782087 Downstream 96bp
chr14 35782182 35782182 1 + G T UCEC 35782180 + 35782160 35782200 41 TGGGTTTAAAGCCACTGCAGCGGGAGTTAAACAAACTGAGT TGGGTTTAAAGCCACTGCAGCGTGAGTTAAACAAACTGAGT < 41bp 0.734401697607511 0.401564019728906 0.8990768 0.24841776 prediction 0.468803395215022 Functional Loss - PSMA6 ENSG00000100902 CDS Human protein_coding chr14:35782180 chr14:35782182 stopgain 0.997 1 23 hm5C_associated_SNPs_72286 0 0 1 0 2 PSMA6 chr14:35782265 5'GT 35782265 Upstream 84bp
chr5 148622085 148622085 1 + G A rs61744926 148622082 + 148622062 148622102 41 AGTAACATCTACCGGAAACCCCCGATCTACAAACGGCATGG AGTAACATCTACCGGAAACCCCCAATCTACAAACGGCATGG < 41bp 0.747618196656454 0.513216786601351 0.02536887 0.022598833 prediction 0.468802820110207 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148622082 chr5:148622085 synonymous SNV . 0 24 hm5C_associated_SNPs_72287 0 0 0 0 2 ABLIM3 chr5:148622054 3'AG 148622054 Downstream 32bp
chr5 148622085 148622085 1 + G A rs61744926 148622082 + 148622062 148622102 41 AGTAACATCTACCGGAAACCCCCGATCTACAAACGGCATGG AGTAACATCTACCGGAAACCCCCAATCTACAAACGGCATGG < 41bp 0.747618196656454 0.513216786601351 0.02536887 0.022598833 prediction 0.468802820110207 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148622082 chr5:148622085 synonymous SNV . 0 24 hm5C_associated_SNPs_72287 0 0 0 0 2 ABLIM3 chr5:148622101 5'GT 148622101 Upstream 17bp
chr19 39964988 39964988 1 + G T GBM 39964986 + 39964966 39965006 41 CGCCAAGCCCAGCAGGCTACCAGAATACCCACTCCCCAGCC CGCCAAGCCCAGCAGGCTACCATAATACCCACTCCCCAGCC < 41bp 0.894804730690656 0.660412452032115 0.78133345 0.15914345 prediction 0.468784557317082 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39964986 chr19:39964988 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_72293 0 0 1 0 1 SUPT5H chr19:39965042 5'GT 39965042 Upstream 55bp
chr1 22924178 22924178 1 + G A SKCM 22924175 + 22924155 22924195 41 CTCGGGGCCTGCAGGAGACTCCGGGGAAGTCTGCTACGGGA CTCGGGGCCTGCAGGAGACTCCGAGGAAGTCTGCTACGGGA < 41bp 0.734391671644516 0.490862032102825 0.9399536 0.7619149 prediction 0.468783343289032 Functional Loss - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22924175 chr1:22924178 nonsynonymous SNV 0.517 4 24 hm5C_associated_SNPs_72294 0 0 0 0 1 EPHA8 chr1:22924169 3'AG 22924169 Downstream 10bp
chr22 50956610 50956610 1 + G A rs201367371 50956607 + 50956587 50956627 41 CGGAAGGATTTCAGGATGAACACGTGCGTTCCCCACCCCAG CGGAAGGATTTCAGGATGAACACATGCGTTCCCCACCCCAG < 41bp 0.734388096138202 0.485956418082772 0.4476383 0.17871091 prediction 0.468776192276404 Functional Loss - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50956607 chr22:50956610 synonymous SNV . 0 24 hm5C_associated_SNPs_72295 0 0 1 1 1 NCAPH2 chr22:50956562 3'AG 50956562 Downstream 49bp
chr1 164529151 164529151 1 + G T rs192264696 164529148 + 164529128 164529168 41 CCAGCACTTGCAGGATGGGGCCGGAGGGACCGAGGGGGAGG CCAGCACTTGCAGGATGGGGCCGTAGGGACCGAGGGGGAGG < 41bp 0.734380296006202 0.366044724521374 0.9160414 0.8674903 prediction 0.468760592012405 Functional Loss - PBX1 ENSG00000185630 CDS Human protein_coding chr1:164529148 chr1:164529151 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_72299 0 0 1 0 1 PBX1 chr1:164529250 5'GT 164529250 Upstream 100bp
chr11 64135651 64135651 1 + G T LUAD 64135648 + 64135628 64135668 41 ATTCTCTTTGACCACAACAACGCGGTGATGACCGATGGGCT ATTCTCTTTGACCACAACAACGCTGTGATGACCGATGGGCT < 41bp 0.734376345724438 0.32612574503851 0.83325166 0.11641517 prediction 0.468752691448875 Functional Loss - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64135648 chr11:64135651 synonymous SNV . 0 24 hm5C_associated_SNPs_72302 0 0 1 0 2 RPS6KA4 chr11:64135604 3'AG 64135604 Downstream 48bp
chr11 64135651 64135651 1 + G T LUAD 64135648 + 64135628 64135668 41 ATTCTCTTTGACCACAACAACGCGGTGATGACCGATGGGCT ATTCTCTTTGACCACAACAACGCTGTGATGACCGATGGGCT < 41bp 0.734376345724438 0.32612574503851 0.83325166 0.11641517 prediction 0.468752691448875 Functional Loss - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64135648 chr11:64135651 synonymous SNV . 0 24 hm5C_associated_SNPs_72302 0 0 1 0 2 RPS6KA4 chr11:64135732 5'GT 64135732 Upstream 82bp
chr11 113815477 113815477 1 + G T UCEC 113815475 + 113815455 113815495 41 GGCCCAACGTGCTGTGGTAACAGGTGTGTGAGAAGCCTTGT GGCCCAACGTGCTGTGGTAACATGTGTGTGAGAAGCCTTGT < 41bp 0.899458348747741 0.66508396234099 0.82549614 0.31135887 prediction 0.468748772813502 Functional Loss - HTR3B ENSG00000149305 CDS Human protein_coding chr11:113815475 chr11:113815477 stopgain 0.233 0 23 hm5C_associated_SNPs_72303 0 0 0 0 1 HTR3B chr11:113815477 5'GT 113815477 Upstream 1bp
chr12 8988120 8988120 1 + G A SKCM 8988117 + 8988097 8988137 41 GGACAGGATCCAAATAGCAACAGGATTGCACAGTGGCTGGA GGACAGGATCCAAATAGCAACAGAATTGCACAGTGGCTGGA < 41bp 0.746296512290614 0.511926210948439 0.47119835 0.3346973 prediction 0.46874060268435 Functional Loss - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:8988117 chr12:8988120 synonymous SNV . 0 24 hm5C_associated_SNPs_72305 0 0 0 0 1 A2ML1 chr12:8988103 3'AG 8988103 Downstream 18bp
chr6 7862712 7862712 1 + G C LUSC 7862711 + 7862691 7862731 41 TACCCAGTCCCAGGACGTGGCGCGGGTCTCCAGTGCTTCAG TACCCAGTCCCAGGACGTGGCCCGGGTCTCCAGTGCTTCAG < 41bp 0.879632275951666 0.64527133326417 0.8349453 0.40771484 prediction 0.468721885374991 Functional Loss - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7862711 chr6:7862712 synonymous SNV . 0 22 hm5C_associated_SNPs_72308 0 0 0 0 1 BMP6 chr6:7862731 5'GT 7862731 Upstream 20bp
chr7 123270123 123270123 1 + A C STAD 123270119 + 123270099 123270139 41 ATGTTCCTCTGTGTGCTAAACTGAAGTCTGCACTAGAAGTA ATGTTCCTCTGTGTGCTAAACTGACGTCTGCACTAGAAGTA < 41bp 0.734359785430378 0.313446742112416 0.7963146 0.69368243 prediction 0.468719570860755 Functional Loss - ASB15 ENSG00000146809 CDS Human protein_coding chr7:123270119 chr7:123270123 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_72309 0 0 0 0 1 ASB15 chr7:123270173 5'GT 123270173 Upstream 51bp
chr13 51915467 51915467 1 + G A LUAD 51915464 + 51915444 51915484 41 GGTCAGCAGCTGGCAGATGCCCTGGGGTACACTGTCCATGG GGTCAGCAGCTGGCAGATGCCCTAGGGTACACTGTCCATGG < 41bp 0.749649734364039 0.515290665602122 0.3841998 0.12436947 prediction 0.468718137523833 Functional Loss - SERPINE3 ENSG00000253309 CDS Human protein_coding chr13:51915464 chr13:51915467 synonymous SNV . 0 24 hm5C_associated_SNPs_72310 0 0 0 0 1 SERPINE3 chr13:51915483 5'GT 51915483 Upstream 17bp
chr5 139747324 139747324 1 + T C STAD 139747323 + 139747303 139747343 41 AGAAGGGAGCTGGCTTCCACCTGGACCTCTTCTGTGTGGCT AGAAGGGAGCTGGCTTCCACCCGGACCTCTTCTGTGTGGCT < 41bp 0.78179826626435 0.547441874848689 0.27325076 0.2202006 prediction 0.468712782831323 Functional Loss - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139747323 chr5:139747324 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_72312 0 0 0 0 1 SLC4A9 chr5:139747305 3'AG 139747305 Downstream 20bp
chr7 150417160 150417160 1 + G A GBM 150417157 + 150417137 150417177 41 TTTAGAAGAGAACGCTCAGTCCCGGCAGGAGTCCACGCGGA TTTAGAAGAGAACGCTCAGTCCCAGCAGGAGTCCACGCGGA < 41bp 0.766100845979612 0.531747183671086 0.04670286 0.023379952 prediction 0.468707324617052 Functional Loss - GIMAP1;GIMAP1-GIMAP5 ENSG00000213203 CDS Human protein_coding chr7:150417157 chr7:150417160 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_72313 0 0 0 0 1 GIMAP1;GIMAP1-GIMAP5 chr7:150417136 3'AG 150417136 Downstream 25bp
chr1 110173651 110173651 1 + C T UCEC 110173649 + 110173629 110173669 41 GGACCAATGTGCCAGACATCCGCGTGGGCTACCGCTACGAG GGACCAATGTGCCAGACATCCGTGTGGGCTACCGCTACGAG < 41bp 0.785076160537115 0.550732881732181 0.6515517 0.7338836 prediction 0.468686557609868 Functional Loss - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110173649 chr1:110173651 synonymous SNV . 0 23 hm5C_associated_SNPs_72316 0 0 1 0 1 AMPD2 chr1:110173565 3'AG 110173565 Downstream 87bp
chr7 889619 889619 1 + C T UCEC 889617 + 889597 889637 41 CACAGCCGCCCACTCGCAGTCGCCACGGCTGCCCGGTCGGG CACAGCCGCCCACTCGCAGTCGTCACGGCTGCCCGGTCGGG < 41bp 0.776248815578784 0.541906342301307 0.38577384 0.23223421 prediction 0.468684946554954 Functional Loss - SUN1 ENSG00000164828 CDS Human protein_coding chr7:889617 chr7:889619 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_72317 0 0 1 0 2 SUN1 chr7:889560 3'AG 889560 Downstream 60bp
chr7 889619 889619 1 + C T UCEC 889617 + 889597 889637 41 CACAGCCGCCCACTCGCAGTCGCCACGGCTGCCCGGTCGGG CACAGCCGCCCACTCGCAGTCGTCACGGCTGCCCGGTCGGG < 41bp 0.776248815578784 0.541906342301307 0.38577384 0.23223421 prediction 0.468684946554954 Functional Loss - SUN1 ENSG00000164828 CDS Human protein_coding chr7:889617 chr7:889619 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_72317 0 0 1 0 2 SUN1 chr7:889670 5'GT 889670 Upstream 52bp
chr12 57894254 57894254 1 + G C KIRP 57894250 + 57894230 57894270 41 CTTCTGTGGCTATGAGGAGGCTCGGGGTGACCAGTGTGACA CTTCTGTGGCTATGAGGAGGCTCGCGGTGACCAGTGTGACA < 41bp 0.833087802498077 0.598751197489979 0.65686095 0.31706566 prediction 0.468673210016196 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57894250 chr12:57894254 synonymous SNV . 0 25 hm5C_associated_SNPs_72320 0 0 1 0 1 MARS chr12:57894305 5'GT 57894305 Upstream 52bp
chr11 62554927 62554927 1 + C T LUAD 62554925 + 62554905 62554945 41 TGGCGCTGTCCTGGCTGCAGCGCGTCGAGCTTGCGCTCTTT TGGCGCTGTCCTGGCTGCAGCGTGTCGAGCTTGCGCTCTTT < 41bp 0.734330802519727 0.499884263222352 0.84501874 0.8043786 prediction 0.468661605039454 Functional Loss - TMEM179B ENSG00000185475 CDS Human protein_coding chr11:62554925 chr11:62554927 synonymous SNV . 0 23 hm5C_associated_SNPs_72323 0 0 1 0 1 TMEM179B chr11:62554999 5'GT 62554999 Upstream 73bp
chr15 23812084 23812084 1 + G T UCEC 23812082 + 23812062 23812102 41 TGGAGGAGGAGGAAGAGAAGCAGAAACTTATTCAGCAATAC TGGAGGAGGAGGAAGAGAAGCATAAACTTATTCAGCAATAC < 41bp 0.734329598014022 0.396201194129739 0.850165 0.224426 prediction 0.468659196028043 Functional Loss - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23812082 chr15:23812084 nonsynonymous SNV 0.961 2 23 hm5C_associated_SNPs_72325 0 0 1 0 1 MKRN3 chr15:23812131 5'GT 23812131 Upstream 48bp
chr15 41859581 41859581 1 + G A STAD 41859578 + 41859558 41859598 41 GTGACACAGGCCCCAGGAGGCTGGGAAGTCCTGGCTGTTGT GTGACACAGGCCCCAGGAGGCTGAGAAGTCCTGGCTGTTGT < 41bp 0.747142412019734 0.512817212412689 0.56790394 0.19583759 prediction 0.468650399214089 Functional Loss - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41859578 chr15:41859581 stopgain 0.999 0 24 hm5C_associated_SNPs_72327 0 0 0 0 1 TYRO3 chr15:41859558 3'AG 41859558 Downstream 24bp
chrX 65414953 65414953 1 + G A SKCM 65414950 + 65414930 65414970 41 CATTTTCCAGGGCCAGTGATCCGGGCTGAGGTGGGTGACAC CATTTTCCAGGGCCAGTGATCCGAGCTGAGGTGGGTGACAC < 41bp 0.734322152532266 0.492217883619612 0.9337542 0.92148566 prediction 0.468644305064531 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65414950 chrX:65414953 synonymous SNV . 0 24 hm5C_associated_SNPs_72328 0 0 1 0 1 HEPH chrX:65414940 3'AG 65414940 Downstream 14bp
chr20 62630972 62630972 1 + C T COAD 62630970 + 62630950 62630990 41 TCATAGTGATATCAAGAAGGCGCGACTGCTCCTCAAGTCTG TCATAGTGATATCAAGAAGGCGTGACTGCTCCTCAAGTCTG < 41bp 0.82858626972205 0.594265022472462 0.23814026 0.2275114 prediction 0.468642494499176 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62630970 chr20:62630972 stopgain 0.639 1 23 hm5C_associated_SNPs_72329 0 0 1 0 1 PRPF6 chr20:62630956 3'AG 62630956 Downstream 17bp
chr6 25770394 25770394 1 + G T ESCA 25770392 + 25770372 25770412 41 AATCCCCAGTGGCTATGTGGCTGGAATATTTGGAGCCAAGT AATCCCCAGTGGCTATGTGGCTTGAATATTTGGAGCCAAGT < 41bp 0.734318865197984 0.387644539534254 0.10009843 0.005642444 prediction 0.468637730395968 Functional Loss - SLC17A4 ENSG00000146039 CDS Human protein_coding chr6:25770392 chr6:25770394 stopgain 0.979 0 23 hm5C_associated_SNPs_72330 0 0 0 0 1 SLC17A4 chr6:25770295 3'AG 25770295 Downstream 100bp
chr5 148702277 148702277 1 + T C BRCA 148702276 + 148702256 148702296 41 GTCAAAGTCAAACGCCACGCCTCCAGTGAGTTGTGTGTGGG GTCAAAGTCAAACGCCACGCCCCCAGTGAGTTGTGTGTGGG < 41bp 0.734317650547538 0.453194362255055 0.94816375 0.035263777 prediction 0.468635301095076 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148702276 chr5:148702277 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_72332 0 0 0 0 1 AFAP1L1 chr5:148702280 5'GT 148702280 Upstream 4bp
chr20 3025336 3025336 1 + G A COAD 3025333 + 3025313 3025353 41 TTCCCTTCTAAGGAAGGGCCCTGGACACTGCAGCAGGCAGC TTCCCTTCTAAGGAAGGGCCCTGAACACTGCAGCAGGCAGC < 41bp 0.734312586680616 0.493368911191329 0.29716367 0.20057318 prediction 0.468625173361232 Functional Loss - GNRH2 ENSG00000125787 CDS Human protein_coding chr20:3025333 chr20:3025336 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_72338 0 0 0 0 1 GNRH2 chr20:3025325 3'AG 3025325 Downstream 12bp
chr7 135263592 135263592 1 + G A SKCM 135263589 + 135263569 135263609 41 CTCACAGCTTTGGAAACTGCCTGGGCTCCAAGCCACTGTTA CTCACAGCTTTGGAAACTGCCTGAGCTCCAAGCCACTGTTA < 41bp 0.734310499613108 0.499934811688347 0.29101443 0.09769896 prediction 0.468620999226217 Functional Loss - NUP205 ENSG00000155561 CDS Human protein_coding chr7:135263589 chr7:135263592 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_72339 0 0 1 1 2 NUP205 chr7:135263499 3'AG 135263499 Downstream 94bp
chr7 135263592 135263592 1 + G A SKCM 135263589 + 135263569 135263609 41 CTCACAGCTTTGGAAACTGCCTGGGCTCCAAGCCACTGTTA CTCACAGCTTTGGAAACTGCCTGAGCTCCAAGCCACTGTTA < 41bp 0.734310499613108 0.499934811688347 0.29101443 0.09769896 prediction 0.468620999226217 Functional Loss - NUP205 ENSG00000155561 CDS Human protein_coding chr7:135263589 chr7:135263592 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_72339 0 0 1 1 2 NUP205 chr7:135263663 5'GT 135263663 Upstream 72bp
chr2 42936056 42936056 1 + G A SKCM 42936053 + 42936033 42936073 41 ACGTGTCCCGCCAGGCCATGCAGGGAATGCCAGTCCGAAAC ACGTGTCCCGCCAGGCCATGCAGAGAATGCCAGTCCGAAAC < 41bp 0.76697956679215 0.532669888824466 0.90716046 0.84987235 prediction 0.468619355935368 Functional Loss - MTA3 ENSG00000057935 CDS Human protein_coding chr2:42936053 chr2:42936056 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_72340 0 0 0 0 1 MTA3 chr2:42936014 3'AG 42936014 Downstream 43bp
chr11 76795941 76795941 1 + G A rs182958020 76795938 + 76795918 76795958 41 GGGGCAGCAGCCACCATGTTCTCGTGTGTGAAGCCCTATGA GGGGCAGCAGCCACCATGTTCTCATGTGTGAAGCCCTATGA < 41bp 0.755548747029979 0.521239707381256 0.269227 0.24483243 prediction 0.468618079297447 Functional Loss - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76795938 chr11:76795941 synonymous SNV . 0 24 hm5C_associated_SNPs_72341 0 0 0 0 1 CAPN5 chr11:76795898 3'AG 76795898 Downstream 44bp
chr4 52753360 52753360 1 + G A rs184610937 52753357 + 52753337 52753377 41 GCTCACTGCAACCTCTGCCTCCCGGGTTGAAGCGATTTCCC GCTCACTGCAACCTCTGCCTCCCAGGTTGAAGCGATTTCCC < 41bp 0.743421341968805 0.509112421000507 0.10096091 0.06371659 prediction 0.468617841936597 Functional Loss - DCUN1D4 ENSG00000109184 CDS Human protein_coding chr4:52753357 chr4:52753360 synonymous SNV . 0 24 hm5C_associated_SNPs_72342 0 0 0 0 1 DCUN1D4 chr4:52753410 5'GT 52753410 Upstream 51bp
chr15 92669332 92669332 1 + G A COAD 92669329 + 92669309 92669349 41 GTGCTTGTCTGGGTATCTTCCTGGGAGGTCTTTTGGTGAAG GTGCTTGTCTGGGTATCTTCCTGAGAGGTCTTTTGGTGAAG < 41bp 0.734305460893964 0.489862435956624 0.8441171 0.2989996 prediction 0.468610921787927 Functional Loss - SLCO3A1 ENSG00000176463 CDS Human protein_coding chr15:92669329 chr15:92669332 nonsynonymous SNV 0.727 4 24 hm5C_associated_SNPs_72344 0 0 0 0 1 SLCO3A1 chr15:92669291 3'AG 92669291 Downstream 42bp
chr12 123342728 123342728 1 + C T BLCA 123342726 + 123342706 123342746 41 CGGGGCGCTGCTGCCGAGGCCGCGGGCATCCTGCAGGATGC CGGGGCGCTGCTGCCGAGGCCGTGGGCATCCTGCAGGATGC < 41bp 0.774321435104278 0.540016626642908 0.65154135 0.5362463 prediction 0.46860961692274 Functional Loss - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123342726 chr12:123342728 nonsynonymous SNV 0.007 1 23 hm5C_associated_SNPs_72345 0 0 1 0 2 HIP1R chr12:123342649 3'AG 123342649 Downstream 80bp
chr12 123342728 123342728 1 + C T BLCA 123342726 + 123342706 123342746 41 CGGGGCGCTGCTGCCGAGGCCGCGGGCATCCTGCAGGATGC CGGGGCGCTGCTGCCGAGGCCGTGGGCATCCTGCAGGATGC < 41bp 0.774321435104278 0.540016626642908 0.65154135 0.5362463 prediction 0.46860961692274 Functional Loss - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123342726 chr12:123342728 nonsynonymous SNV 0.007 1 23 hm5C_associated_SNPs_72345 0 0 1 0 2 HIP1R chr12:123342796 5'GT 123342796 Upstream 69bp
chr16 68845724 68845724 1 + G T UCEC 68845722 + 68845702 68845742 41 GTTCACCATTAACAGGAACACAGGAGTCATCAGTGTGGTCA GTTCACCATTAACAGGAACACATGAGTCATCAGTGTGGTCA < 41bp 0.899947561259684 0.665643498850566 0.7888606 0.23041654 prediction 0.468608124818236 Functional Loss - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68845722 chr16:68845724 stopgain 0.820 1 23 hm5C_associated_SNPs_72346 0 0 0 0 1 CDH1 chr16:68845762 5'GT 68845762 Upstream 39bp
chr6 44397572 44397572 1 + T C COAD 44397571 + 44397551 44397591 41 CAGTCAAGTTTTATATCTTCCTGGGCAGAGCCGCTACACAC CAGTCAAGTTTTATATCTTCCCGGGCAGAGCCGCTACACAC < 41bp 0.765632205168356 0.53133207850042 0.086055696 0.10610694 prediction 0.468600253335871 Functional Loss - CDC5L ENSG00000096401 CDS Human protein_coding chr6:44397571 chr6:44397572 synonymous SNV . 0 22 hm5C_associated_SNPs_72348 0 0 1 0 1 CDC5L chr6:44397647 5'GT 44397647 Upstream 76bp
chr16 3713453 3713453 1 - C T THYM 3713456 - 3713436 3713476 41 GACATAGTCGTGGATCACTACAAGGAGGAGAAGTTTGAGGA GACATAGTCGTGGATCACTACAAAGAGGAGAAGTTTGAGGA < 41bp 0.756598961235997 0.522301993653072 0.8652618 0.49399292 prediction 0.468593935165851 Functional Loss - TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3713456 chr16:3713453 synonymous SNV . 0 24 hm5C_associated_SNPs_72350 0 0 1 0 1 TRAP1 chr16:3713425 5'GT 3713425 Upstream 29bp
chr16 30522255 30522255 1 + G A rs7201914 30522252 + 30522232 30522272 41 GTAAACAGCTCCTGGGGGGACTCGGTTGAATTGCACGCCAA GTAAACAGCTCCTGGGGGGACTCAGTTGAATTGCACGCCAA < 41bp 0.753020399184818 0.518724598517745 0.90335006 0.77453756 prediction 0.468591601334145 Functional Loss - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30522252 chr16:30522255 synonymous SNV . 0 24 hm5C_associated_SNPs_72351 0 0 0 0 3 ITGAL chr16:30522202 3'AG 30522202 Downstream 54bp
chr16 30522255 30522255 1 + G A rs7201914 30522252 + 30522232 30522272 41 GTAAACAGCTCCTGGGGGGACTCGGTTGAATTGCACGCCAA GTAAACAGCTCCTGGGGGGACTCAGTTGAATTGCACGCCAA < 41bp 0.753020399184818 0.518724598517745 0.90335006 0.77453756 prediction 0.468591601334145 Functional Loss - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30522252 chr16:30522255 synonymous SNV . 0 24 hm5C_associated_SNPs_72351 0 0 0 0 3 ITGAL chr16:30522214 3'AG 30522214 Downstream 42bp
chr16 30522255 30522255 1 + G A rs7201914 30522252 + 30522232 30522272 41 GTAAACAGCTCCTGGGGGGACTCGGTTGAATTGCACGCCAA GTAAACAGCTCCTGGGGGGACTCAGTTGAATTGCACGCCAA < 41bp 0.753020399184818 0.518724598517745 0.90335006 0.77453756 prediction 0.468591601334145 Functional Loss - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30522252 chr16:30522255 synonymous SNV . 0 24 hm5C_associated_SNPs_72351 0 0 0 0 3 ITGAL chr16:30522281 5'GT 30522281 Upstream 27bp
chr11 63961765 63961765 1 + G T BLCA 63961763 + 63961743 63961783 41 ACGAGGCAAATAACCCTCAACTGAAAGAGGGTTTACAGAAT ACGAGGCAAATAACCCTCAACTTAAAGAGGGTTTACAGAAT < 41bp 0.734293220201727 0.40185045524506 0.28963593 0.11405009 prediction 0.468586440403453 Functional Loss - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63961763 chr11:63961765 synonymous SNV . 0 23 hm5C_associated_SNPs_72353 0 0 1 0 2 STIP1 chr11:63961733 3'AG 63961733 Downstream 33bp
chr11 63961765 63961765 1 + G T BLCA 63961763 + 63961743 63961783 41 ACGAGGCAAATAACCCTCAACTGAAAGAGGGTTTACAGAAT ACGAGGCAAATAACCCTCAACTTAAAGAGGGTTTACAGAAT < 41bp 0.734293220201727 0.40185045524506 0.28963593 0.11405009 prediction 0.468586440403453 Functional Loss - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63961763 chr11:63961765 synonymous SNV . 0 23 hm5C_associated_SNPs_72353 0 0 1 0 2 STIP1 chr11:63961802 5'GT 63961802 Upstream 38bp
chr3 52456897 52456897 1 + G T UCEC 52456895 + 52456875 52456915 41 GTGTTCACCTGCTGCAGCCACAGGTGAGGCTGGAGGGATGG GTGTTCACCTGCTGCAGCCACATGTGAGGCTGGAGGGATGG < 41bp 0.734290004589241 0.377489666334677 0.781751 0.4755299 prediction 0.468580009178482 Functional Loss - PHF7 ENSG00000010318 CDS Human protein_coding chr3:52456895 chr3:52456897 nonsynonymous SNV 0.610 1 23 hm5C_associated_SNPs_72356 0 0 0 0 1 PHF7 chr3:52456897 5'GT 52456897 Upstream 1bp
chr10 15145328 15145328 1 + T C THCA 15145327 + 15145307 15145347 41 TTTCAAAATGGCTGCAGCTCCTCAAGCACCGGGGCGGGGAT TTTCAAAATGGCTGCAGCTCCCCAAGCACCGGGGCGGGGAT < 41bp 0.776874425156843 0.542587141687998 0.32743892 0.11550757 prediction 0.46857456693769 Functional Loss - RPP38 ENSG00000152464 CDS Human protein_coding chr10:15145327 chr10:15145328 synonymous SNV . 0 22 hm5C_associated_SNPs_72357 0 0 1 0 1 RPP38 chr10:15145304 3'AG 15145304 Downstream 25bp
chr11 64082538 64082538 1 + G A UCEC 64082535 + 64082515 64082555 41 AGAGCGTGTGGATGGAGGTGCTGGTGCTGGGTGTGGCCCAG AGAGCGTGTGGATGGAGGTGCTGATGCTGGGTGTGGCCCAG < 41bp 0.734285358642133 0.483288026098251 0.45463476 0.40720117 prediction 0.468570717284267 Functional Loss - ESRRA ENSG00000173153 CDS Human protein_coding chr11:64082535 chr11:64082538 nonsynonymous SNV 0.992 5 24 hm5C_associated_SNPs_72359 0 0 1 0 1 ESRRA chr11:64082473 3'AG 64082473 Downstream 66bp
chr20 2384465 2384465 1 + G T THCA 2384463 + 2384443 2384483 41 TCACTGACCTCTACAAGTATCCGGAAGGTAAGGGCCACATG TCACTGACCTCTACAAGTATCCTGAAGGTAAGGGCCACATG < 41bp 0.734284457374327 0.380175858610733 0.88605237 0.31594238 prediction 0.468568914748654 Functional Loss - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2384463 chr20:2384465 synonymous SNV . 0 23 hm5C_associated_SNPs_72360 0 0 0 0 1 TGM6 chr20:2384469 5'GT 2384469 Upstream 5bp
chr19 16890268 16890268 1 + G A rs200792163 16890265 + 16890245 16890285 41 GCATGTGATCCACATGCTAACTGGACACACAGGTGAGACTT GCATGTGATCCACATGCTAACTGAACACACAGGTGAGACTT < 41bp 0.734278994241675 0.494217679469819 0.41441733 0.14254546 prediction 0.46855798848335 Functional Loss - NWD1 ENSG00000188039 CDS Human protein_coding chr19:16890265 chr19:16890268 nonsynonymous SNV 0.890 3 24 hm5C_associated_SNPs_72364 0 0 0 0 1 NWD1 chr19:16890276 5'GT 16890276 Upstream 9bp
chr10 96970542 96970542 1 + G A rs150886082 96970539 + 96970519 96970559 41 GGTTTGGGAATGGGATTCAGCCAGGCTTCCAGGTACGGTTC GGTTTGGGAATGGGATTCAGCCAAGCTTCCAGGTACGGTTC < 41bp 0.784729159122895 0.5504516743557 0.85449004 0.2520218 prediction 0.468554969534391 Functional Loss - ACSM6 ENSG00000173124 CDS Human protein_coding chr10:96970539 chr10:96970542 synonymous SNV . 0 24 hm5C_associated_SNPs_72365 0 0 0 0 1 ACSM6 chr10:96970550 5'GT 96970550 Upstream 9bp
chr2 219292998 219292998 1 + G A LUAD 219292995 + 219292975 219293015 41 ACCGAGGGGATGTTTTCCTCCTGGACCTTGGGAAGCTTATC ACCGAGGGGATGTTTTCCTCCTGAACCTTGGGAAGCTTATC < 41bp 0.739736855958526 0.50546516835668 0.09677732 0.066452265 prediction 0.468543375203693 Functional Loss - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219292995 chr2:219292998 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_72366 0 0 1 0 1 VIL1 chr2:219292950 3'AG 219292950 Downstream 49bp
chr1 26524494 26524494 1 + C T BLCA 26524492 + 26524472 26524512 41 CATGGCGGTGGAGCCCCTCGCCCGGATCATCCGCGTCATCC CATGGCGGTGGAGCCCCTCGCCTGGATCATCCGCGTCATCC < 41bp 0.734270194697527 0.469348079374846 0.46555695 0.2804914 prediction 0.468540389395054 Functional Loss - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26524492 chr1:26524494 nonsynonymous SNV 0.992 5 23 hm5C_associated_SNPs_72367 0 0 0 0 2 CATSPER4 chr1:26524448 3'AG 26524448 Downstream 47bp
chr1 26524494 26524494 1 + C T BLCA 26524492 + 26524472 26524512 41 CATGGCGGTGGAGCCCCTCGCCCGGATCATCCGCGTCATCC CATGGCGGTGGAGCCCCTCGCCTGGATCATCCGCGTCATCC < 41bp 0.734270194697527 0.469348079374846 0.46555695 0.2804914 prediction 0.468540389395054 Functional Loss - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26524492 chr1:26524494 nonsynonymous SNV 0.992 5 23 hm5C_associated_SNPs_72367 0 0 0 0 2 CATSPER4 chr1:26524568 5'GT 26524568 Upstream 75bp
chr1 26524495 26524495 1 + G A STAD 26524492 + 26524472 26524512 41 CATGGCGGTGGAGCCCCTCGCCCGGATCATCCGCGTCATCC CATGGCGGTGGAGCCCCTCGCCCAGATCATCCGCGTCATCC < 41bp 0.734270194697527 0.482401712193924 0.46555695 0.18274587 prediction 0.468540389395054 Functional Loss - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26524492 chr1:26524495 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_72368 0 0 0 0 2 CATSPER4 chr1:26524448 3'AG 26524448 Downstream 48bp
chr1 26524495 26524495 1 + G A STAD 26524492 + 26524472 26524512 41 CATGGCGGTGGAGCCCCTCGCCCGGATCATCCGCGTCATCC CATGGCGGTGGAGCCCCTCGCCCAGATCATCCGCGTCATCC < 41bp 0.734270194697527 0.482401712193924 0.46555695 0.18274587 prediction 0.468540389395054 Functional Loss - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26524492 chr1:26524495 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_72368 0 0 0 0 2 CATSPER4 chr1:26524568 5'GT 26524568 Upstream 74bp
chr18 633371 633371 1 + G T UCEC 633369 + 633349 633389 41 GACTGTGTGGGGAACTTGACCAGAATTTGTCAAGATGTTTC GACTGTGTGGGGAACTTGACCATAATTTGTCAAGATGTTTC < 41bp 0.734267769657228 0.396444013064438 0.23491248 0.047849923 prediction 0.468535539314455 Functional Loss - CLUL1 ENSG00000079101 CDS Human protein_coding chr18:633369 chr18:633371 nonsynonymous SNV 0.882 3 23 hm5C_associated_SNPs_72369 0 0 0 0 2 CLUL1 chr18:633298 3'AG 633298 Downstream 74bp
chr18 633371 633371 1 + G T UCEC 633369 + 633349 633389 41 GACTGTGTGGGGAACTTGACCAGAATTTGTCAAGATGTTTC GACTGTGTGGGGAACTTGACCATAATTTGTCAAGATGTTTC < 41bp 0.734267769657228 0.396444013064438 0.23491248 0.047849923 prediction 0.468535539314455 Functional Loss - CLUL1 ENSG00000079101 CDS Human protein_coding chr18:633369 chr18:633371 nonsynonymous SNV 0.882 3 23 hm5C_associated_SNPs_72369 0 0 0 0 2 CLUL1 chr18:633435 5'GT 633435 Upstream 65bp
chr20 24565547 24565547 1 + G A COAD 24565544 + 24565524 24565564 41 CAATTTCCTCATGATGCCCCCGCGGGACCACCTGGGCCTCA CAATTTCCTCATGATGCCCCCGCAGGACCACCTGGGCCTCA < 41bp 0.760394185318513 0.526129693273439 0.1001302 0.012733012 prediction 0.468528984090149 Functional Loss - SYNDIG1 ENSG00000101463 CDS Human protein_coding chr20:24565544 chr20:24565547 nonsynonymous SNV 0.861 2 24 hm5C_associated_SNPs_72372 0 0 0 0 2 SYNDIG1 chr20:24565492 3'AG 24565492 Downstream 56bp
chr20 24565547 24565547 1 + G A COAD 24565544 + 24565524 24565564 41 CAATTTCCTCATGATGCCCCCGCGGGACCACCTGGGCCTCA CAATTTCCTCATGATGCCCCCGCAGGACCACCTGGGCCTCA < 41bp 0.760394185318513 0.526129693273439 0.1001302 0.012733012 prediction 0.468528984090149 Functional Loss - SYNDIG1 ENSG00000101463 CDS Human protein_coding chr20:24565544 chr20:24565547 nonsynonymous SNV 0.861 2 24 hm5C_associated_SNPs_72372 0 0 0 0 2 SYNDIG1 chr20:24565629 5'GT 24565629 Upstream 83bp
chr8 11418859 11418859 1 + G A LGG 11418856 + 11418836 11418876 41 AGCGCATGAATTCCATCCACCGCGACCTGCGGGCGGCCAAC AGCGCATGAATTCCATCCACCGCAACCTGCGGGCGGCCAAC < 41bp 0.781706691578654 0.547443809839294 0.8550373 0.26231235 prediction 0.468525763478722 Functional Loss - BLK ENSG00000136573 CDS Human protein_coding chr8:11418856 chr8:11418859 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_72373 0 0 0 0 1 BLK chr8:11418811 3'AG 11418811 Downstream 49bp
chr9 138454250 138454250 1 + G A SKCM 138454247 + 138454227 138454267 41 ACCTCACTGTTGCCCACCCCCGAGGACAACCTGGAGATCGT ACCTCACTGTTGCCCACCCCCGAAGACAACCTGGAGATCGT < 41bp 0.740279101581767 0.506018842658097 0.70276237 0.3557831 prediction 0.46852051784734 Functional Loss - PAEP ENSG00000122133 CDS Human protein_coding chr9:138454247 chr9:138454250 synonymous SNV . 0 24 hm5C_associated_SNPs_72374 0 0 0 0 2 PAEP chr9:138454206 3'AG 138454206 Downstream 45bp
chr9 138454250 138454250 1 + G A SKCM 138454247 + 138454227 138454267 41 ACCTCACTGTTGCCCACCCCCGAGGACAACCTGGAGATCGT ACCTCACTGTTGCCCACCCCCGAAGACAACCTGGAGATCGT < 41bp 0.740279101581767 0.506018842658097 0.70276237 0.3557831 prediction 0.46852051784734 Functional Loss - PAEP ENSG00000122133 CDS Human protein_coding chr9:138454247 chr9:138454250 synonymous SNV . 0 24 hm5C_associated_SNPs_72374 0 0 0 0 2 PAEP chr9:138454279 5'GT 138454279 Upstream 30bp
chr8 87464813 87464813 1 + C T BRCA 87464811 + 87464791 87464831 41 AATGACAGAATGGCGTTTTTCTCGAGGAGTACAAGAACAGA AATGACAGAATGGCGTTTTTCTTGAGGAGTACAAGAACAGA < 41bp 0.854420684075953 0.620163549294675 0.18969044 0.040630728 prediction 0.468514269562555 Functional Loss - WWP1 ENSG00000123124 CDS Human protein_coding chr8:87464811 chr8:87464813 stopgain 1.000 1 23 hm5C_associated_SNPs_72377 0 0 1 0 2 WWP1 chr8:87464788 3'AG 87464788 Downstream 26bp
chr8 87464813 87464813 1 + C T BRCA 87464811 + 87464791 87464831 41 AATGACAGAATGGCGTTTTTCTCGAGGAGTACAAGAACAGA AATGACAGAATGGCGTTTTTCTTGAGGAGTACAAGAACAGA < 41bp 0.854420684075953 0.620163549294675 0.18969044 0.040630728 prediction 0.468514269562555 Functional Loss - WWP1 ENSG00000123124 CDS Human protein_coding chr8:87464811 chr8:87464813 stopgain 1.000 1 23 hm5C_associated_SNPs_72377 0 0 1 0 2 WWP1 chr8:87464908 5'GT 87464908 Upstream 96bp
chr7 155251672 155251672 1 + G A rs80239010 155251669 + 155251649 155251689 41 GTGAGCTCGGACTCGGACAGCTCGCAAGCCGGCGCCAACCT GTGAGCTCGGACTCGGACAGCTCACAAGCCGGCGCCAACCT < 41bp 0.745550805425951 0.511294170770209 0.122831285 0.0729917 prediction 0.468513269311482 Functional Loss - EN2 ENSG00000164778 CDS Human protein_coding chr7:155251669 chr7:155251672 synonymous SNV . 0 24 hm5C_associated_SNPs_72379 0 0 1 0 1 EN2 chr7:155251757 5'GT 155251757 Upstream 86bp
chr11 73103469 73103469 1 + C T STAD 73103467 + 73103447 73103487 41 AAGCGGAAGGGCTACCACTGCACGGCGCACAAGGAGGTCGG AAGCGGAAGGGCTACCACTGCATGGCGCACAAGGAGGTCGG < 41bp 0.789428034939151 0.555172725563887 0.6773374 0.4666289 prediction 0.468510618750529 Functional Loss - RELT ENSG00000054967 CDS Human protein_coding chr11:73103467 chr11:73103469 nonsynonymous SNV 0.635 3 23 hm5C_associated_SNPs_72381 0 0 0 0 1 RELT chr11:73103513 5'GT 73103513 Upstream 45bp
chr11 124007760 124007760 1 + A C LUAD 124007756 + 124007736 124007776 41 GCCTTGCTGCCAAGTCCTTGCTCCAGACCAAGGACATGGGC GCCTTGCTGCCAAGTCCTTGCTCCCGACCAAGGACATGGGC < 41bp 0.734249772357336 0.291711347562151 0.52654517 0.084920555 prediction 0.468499544714672 Functional Loss - VWA5A ENSG00000110002 CDS Human protein_coding chr11:124007756 chr11:124007760 nonsynonymous SNV 0.819 3 25 hm5C_associated_SNPs_72384 0 0 0 0 1 VWA5A chr11:124007722 3'AG 124007722 Downstream 39bp
chr9 7165251 7165251 1 + T C LIHC 7165250 + 7165230 7165270 41 TTCTGCAGAGCCGAGACTGTCTGAAGCTGGGCCCACCTGCT TTCTGCAGAGCCGAGACTGTCCGAAGCTGGGCCCACCTGCT < 41bp 0.749294249685366 0.51504849953975 0.87605584 0.7497749 prediction 0.468491500291232 Functional Loss - KDM4C ENSG00000107077 CDS Human protein_coding chr9:7165250 chr9:7165251 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_72386 0 0 1 1 1 KDM4C chr9:7165238 3'AG 7165238 Downstream 14bp
chr1 201297943 201297943 1 + G A SKCM 201297940 + 201297920 201297960 41 TTAGCTGGGGCCAACAGCCTCAGGAACTTCACCTCCCGATT TTAGCTGGGGCCAACAGCCTCAGAAACTTCACCTCCCGATT < 41bp 0.768867241207592 0.534627480690141 0.9268962 0.8969301 prediction 0.468479521034901 Functional Loss - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201297940 chr1:201297943 synonymous SNV . 0 24 hm5C_associated_SNPs_72389 0 0 0 0 2 PKP1 chr1:201297890 3'AG 201297890 Downstream 54bp
chr1 201297943 201297943 1 + G A SKCM 201297940 + 201297920 201297960 41 TTAGCTGGGGCCAACAGCCTCAGGAACTTCACCTCCCGATT TTAGCTGGGGCCAACAGCCTCAGAAACTTCACCTCCCGATT < 41bp 0.768867241207592 0.534627480690141 0.9268962 0.8969301 prediction 0.468479521034901 Functional Loss - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201297940 chr1:201297943 synonymous SNV . 0 24 hm5C_associated_SNPs_72389 0 0 0 0 2 PKP1 chr1:201297996 5'GT 201297996 Upstream 54bp
chr19 41758777 41758777 1 + G A SARC 41758774 + 41758754 41758794 41 TCTGTTTCCAGGGTTCTGAACGAGAGAGCTTCCCAGCACCT TCTGTTTCCAGGGTTCTGAACGAAAGAGCTTCCCAGCACCT < 41bp 0.783850658136177 0.54961340065255 0.92218447 0.5105939 prediction 0.468474514967253 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41758774 chr19:41758777 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_72390 0 0 1 0 2 AXL chr19:41758751 3'AG 41758751 Downstream 27bp
chr19 41758777 41758777 1 + G A SARC 41758774 + 41758754 41758794 41 TCTGTTTCCAGGGTTCTGAACGAGAGAGCTTCCCAGCACCT TCTGTTTCCAGGGTTCTGAACGAAAGAGCTTCCCAGCACCT < 41bp 0.783850658136177 0.54961340065255 0.92218447 0.5105939 prediction 0.468474514967253 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41758774 chr19:41758777 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_72390 0 0 1 0 2 AXL chr19:41758872 5'GT 41758872 Upstream 96bp
chr1 54428071 54428071 1 + T C LIHC 54428070 + 54428050 54428090 41 AGTAACTGCAAGACAGAGGGCTGGGCTGACCAGGTACTCCA AGTAACTGCAAGACAGAGGGCCGGGCTGACCAGGTACTCCA < 41bp 0.734236444052269 0.499174716640969 0.49986377 0.57080245 prediction 0.468472888104539 Functional Loss - LRRC42 ENSG00000116212 CDS Human protein_coding chr1:54428070 chr1:54428071 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_72392 0 0 0 0 1 LRRC42 chr1:54428082 5'GT 54428082 Upstream 12bp
chr1 54428072 54428072 1 + G T STAD 54428070 + 54428050 54428090 41 AGTAACTGCAAGACAGAGGGCTGGGCTGACCAGGTACTCCA AGTAACTGCAAGACAGAGGGCTTGGCTGACCAGGTACTCCA < 41bp 0.734236444052269 0.394832676190688 0.49986377 0.25725847 prediction 0.468472888104539 Functional Loss - LRRC42 ENSG00000116212 CDS Human protein_coding chr1:54428070 chr1:54428072 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_72393 0 0 0 0 1 LRRC42 chr1:54428082 5'GT 54428082 Upstream 11bp
chr7 64378018 64378018 1 + G T UCEC 64378016 + 64377996 64378036 41 CTCTGGAGGAGTGGCAATGCCTGGACACTTCACAGCAGAAT CTCTGGAGGAGTGGCAATGCCTTGACACTTCACAGCAGAAT < 41bp 0.756699826357204 0.52247454904263 0.073717445 0.035396487 prediction 0.468450554629149 Functional Loss - ZNF273 ENSG00000198039 CDS Human protein_coding chr7:64378016 chr7:64378018 synonymous SNV . 0 23 hm5C_associated_SNPs_72400 0 0 1 0 2 ZNF273 chr7:64377959 3'AG 64377959 Downstream 60bp
chr7 64378018 64378018 1 + G T UCEC 64378016 + 64377996 64378036 41 CTCTGGAGGAGTGGCAATGCCTGGACACTTCACAGCAGAAT CTCTGGAGGAGTGGCAATGCCTTGACACTTCACAGCAGAAT < 41bp 0.756699826357204 0.52247454904263 0.073717445 0.035396487 prediction 0.468450554629149 Functional Loss - ZNF273 ENSG00000198039 CDS Human protein_coding chr7:64378016 chr7:64378018 synonymous SNV . 0 23 hm5C_associated_SNPs_72400 0 0 1 0 2 ZNF273 chr7:64378085 5'GT 64378085 Upstream 68bp
chr2 106497841 106497841 1 + C T UCEC 106497839 + 106497819 106497859 41 GATGCGTCCCCCACGCCCAGCACGGACGCCGAGTACCCCGC GATGCGTCCCCCACGCCCAGCATGGACGCCGAGTACCCCGC < 41bp 0.771671661010553 0.537446574232686 0.31563795 0.31004867 prediction 0.468450173555734 Functional Loss - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106497839 chr2:106497841 nonsynonymous SNV 0.982 2 23 hm5C_associated_SNPs_72401 0 0 1 0 1 NCK2 chr2:106497784 3'AG 106497784 Downstream 58bp
chr1 162769628 162769628 1 + C T COAD 162769626 + 162769606 162769646 41 CAAGGAAATCTAATTTCAGCCTCGAGGACTTCCAGCACAGC CAAGGAAATCTAATTTCAGCCTTGAGGACTTCCAGCACAGC < 41bp 0.841574955052504 0.607351548249869 0.08856043 0.021749973 prediction 0.46844681360527 Functional Loss - HSD17B7 ENSG00000132196 CDS Human protein_coding chr1:162769626 chr1:162769628 synonymous SNV . 0 23 hm5C_associated_SNPs_72402 0 0 0 1 2 HSD17B7 chr1:162769533 3'AG 162769533 Downstream 96bp
chr1 162769628 162769628 1 + C T COAD 162769626 + 162769606 162769646 41 CAAGGAAATCTAATTTCAGCCTCGAGGACTTCCAGCACAGC CAAGGAAATCTAATTTCAGCCTTGAGGACTTCCAGCACAGC < 41bp 0.841574955052504 0.607351548249869 0.08856043 0.021749973 prediction 0.46844681360527 Functional Loss - HSD17B7 ENSG00000132196 CDS Human protein_coding chr1:162769626 chr1:162769628 synonymous SNV . 0 23 hm5C_associated_SNPs_72402 0 0 0 1 2 HSD17B7 chr1:162769727 5'GT 162769727 Upstream 100bp
chr5 3600746 3600746 1 + G A LUAD 3600743 + 3600723 3600763 41 AGAGAGACCTCGTCCCCAGGCCAGATTCGCCGGCACAGCAG AGAGAGACCTCGTCCCCAGGCCAAATTCGCCGGCACAGCAG < 41bp 0.734222316022963 0.490698088464388 0.19376323 0.0743812 prediction 0.468444632045927 Functional Loss - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3600743 chr5:3600746 nonsynonymous SNV 0.989 1 24 hm5C_associated_SNPs_72403 0 0 0 0 2 IRX1 chr5:3600723 3'AG 3600723 Downstream 24bp
chr5 3600746 3600746 1 + G A LUAD 3600743 + 3600723 3600763 41 AGAGAGACCTCGTCCCCAGGCCAGATTCGCCGGCACAGCAG AGAGAGACCTCGTCCCCAGGCCAAATTCGCCGGCACAGCAG < 41bp 0.734222316022963 0.490698088464388 0.19376323 0.0743812 prediction 0.468444632045927 Functional Loss - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3600743 chr5:3600746 nonsynonymous SNV 0.989 1 24 hm5C_associated_SNPs_72403 0 0 0 0 2 IRX1 chr5:3600795 5'GT 3600795 Upstream 50bp
chr10 115535616 115535616 1 + G T LIHC 115535613 + 115535593 115535633 41 TCTTGCTCTCACAGAAGCCACAGGACGGATATGGTAGGTTG TCTTGCTCTCACAGAAGCCACAGTACGGATATGGTAGGTTG < 41bp 0.734220387542101 0.351311360648502 0.28750795 0.1119844 prediction 0.468440775084202 Functional Loss - PLEKHS1 ENSG00000148735 CDS Human protein_coding chr10:115535613 chr10:115535616 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_72404 0 0 0 0 2 PLEKHS1 chr10:115535524 3'AG 115535524 Downstream 93bp
chr10 115535616 115535616 1 + G T LIHC 115535613 + 115535593 115535633 41 TCTTGCTCTCACAGAAGCCACAGGACGGATATGGTAGGTTG TCTTGCTCTCACAGAAGCCACAGTACGGATATGGTAGGTTG < 41bp 0.734220387542101 0.351311360648502 0.28750795 0.1119844 prediction 0.468440775084202 Functional Loss - PLEKHS1 ENSG00000148735 CDS Human protein_coding chr10:115535613 chr10:115535616 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_72404 0 0 0 0 2 PLEKHS1 chr10:115535625 5'GT 115535625 Upstream 10bp
chr8 75263608 75263608 1 + T C LIHC 75263607 + 75263587 75263627 41 CCTTGGTTTATGCGTTTGAACTCAACTGGAGAAGTGCCTGT CCTTGGTTTATGCGTTTGAACCCAACTGGAGAAGTGCCTGT < 41bp 0.792627043715191 0.558416990380583 0.14313087 0.058199793 prediction 0.468420106669217 Functional Loss - GDAP1 ENSG00000104381 CDS Human protein_coding chr8:75263607 chr8:75263608 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_72405 0 0 1 0 3 GDAP1 chr8:75263509 3'AG 75263509 Downstream 100bp
chr8 75263608 75263608 1 + T C LIHC 75263607 + 75263587 75263627 41 CCTTGGTTTATGCGTTTGAACTCAACTGGAGAAGTGCCTGT CCTTGGTTTATGCGTTTGAACCCAACTGGAGAAGTGCCTGT < 41bp 0.792627043715191 0.558416990380583 0.14313087 0.058199793 prediction 0.468420106669217 Functional Loss - GDAP1 ENSG00000104381 CDS Human protein_coding chr8:75263607 chr8:75263608 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_72405 0 0 1 0 3 GDAP1 chr8:75263533 3'AG 75263533 Downstream 76bp
chr8 75263608 75263608 1 + T C LIHC 75263607 + 75263587 75263627 41 CCTTGGTTTATGCGTTTGAACTCAACTGGAGAAGTGCCTGT CCTTGGTTTATGCGTTTGAACCCAACTGGAGAAGTGCCTGT < 41bp 0.792627043715191 0.558416990380583 0.14313087 0.058199793 prediction 0.468420106669217 Functional Loss - GDAP1 ENSG00000104381 CDS Human protein_coding chr8:75263607 chr8:75263608 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_72405 0 0 1 0 3 GDAP1 chr8:75263701 5'GT 75263701 Upstream 94bp
chr20 20257901 20257901 1 + C T HNSC 20257899 + 20257879 20257919 41 TGAGCGGCAGCCGCATCCACCTCGTGCAGCCCCCGCCCGCC TGAGCGGCAGCCGCATCCACCTTGTGCAGCCCCCGCCCGCC < 41bp 0.734208741692467 0.463105852533904 0.21262488 0.08417329 prediction 0.468417483384933 Functional Loss - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20257899 chr20:20257901 synonymous SNV . 0 23 hm5C_associated_SNPs_72406 0 0 0 0 1 CFAP61 chr20:20257810 3'AG 20257810 Downstream 92bp
chr5 129096286 129096286 1 + T C rs143028454 129096285 + 129096265 129096305 41 TTCCCTGCACACAAACCTCTCTGGACATCTGAAGGTACTCA TTCCCTGCACACAAACCTCTCCGGACATCTGAAGGTACTCA < 41bp 0.754617358467163 0.52041456926033 0.020003527 0.14445254 prediction 0.468405578413665 Functional Loss - KIAA1024L ENSG00000186367 CDS Human protein_coding chr5:129096285 chr5:129096286 synonymous SNV . 0 22 hm5C_associated_SNPs_72409 0 0 1 0 1 KIAA1024L chr5:129096298 5'GT 129096298 Upstream 13bp
chr4 74313258 74313258 1 + T C COAD 74313257 + 74313237 74313277 41 AATGCTGCAAACTGACCACGCTGGAACGTGGTCAATGTATA AATGCTGCAAACTGACCACGCCGGAACGTGGTCAATGTATA < 41bp 0.75458653566863 0.520385459957094 0.060171396 0.0458273 prediction 0.468402151423071 Functional Loss - AFP ENSG00000081051 CDS Human protein_coding chr4:74313257 chr4:74313258 nonsynonymous SNV 0.002 2 22 hm5C_associated_SNPs_72410 0 0 1 0 1 AFP chr4:74313179 3'AG 74313179 Downstream 80bp
chr3 127396654 127396654 1 + G A HNSC 127396651 + 127396631 127396671 41 TCTCACCCGACGTCTTCACTCACGTGCTCTACTACATGTAC TCTCACCCGACGTCTTCACTCACATGCTCTACTACATGTAC < 41bp 0.761432530930061 0.527235805027563 0.08043608 0.091932446 prediction 0.468393451804997 Functional Loss - ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127396651 chr3:127396654 nonsynonymous SNV 0.340 4 24 hm5C_associated_SNPs_72414 0 0 0 0 1 ABTB1 chr3:127396686 5'GT 127396686 Upstream 33bp
chr17 48356589 48356589 1 + A C UCEC 48356588 + 48356568 48356608 41 CCCAGCCTGGGCCCAACTCCCACAGAGCCACCCCCTCCCTA CCCAGCCTGGGCCCAACTCCCCCAGAGCCACCCCCTCCCTA < 41bp 0.734196003420235 0.470050391147939 0.054673165 0.050121278 prediction 0.468392006840471 Functional Loss - TMEM92 ENSG00000167105 CDS Human protein_coding chr17:48356588 chr17:48356589 nonsynonymous SNV 0.140 0 22 hm5C_associated_SNPs_72415 0 0 0 0 1 TMEM92 chr17:48356556 3'AG 48356556 Downstream 34bp
chr11 70007371 70007371 1 + G A COAD 70007368 + 70007348 70007388 41 CCCTCCGTGCGGTCCAACATCCGGGTCACAGTCACAGCCAC CCCTCCGTGCGGTCCAACATCCGAGTCACAGTCACAGCCAC < 41bp 0.782360949537593 0.548166314526655 0.8889005 0.42262566 prediction 0.468389270021875 Functional Loss - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70007368 chr11:70007371 synonymous SNV . 0 24 hm5C_associated_SNPs_72416 0 0 0 1 1 ANO1 chr11:70007468 5'GT 70007468 Upstream 98bp
chr1 150463090 150463090 1 + C T SKCM 150463088 + 150463068 150463108 41 TGAACCCAGGTGTTCTGGCACTCCAGCACCCATGTCCTGGG TGAACCCAGGTGTTCTGGCACTTCAGCACCCATGTCCTGGG < 41bp 0.73419357376153 0.430329840992136 0.9239794 0.38774908 prediction 0.468387147523061 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150463088 chr1:150463090 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_72417 0 0 0 0 1 TARS2 chr1:150463077 3'AG 150463077 Downstream 14bp
chr1 101190379 101190379 1 + A T UCEC 101190375 + 101190355 101190395 41 TGCTATGAGGATGGAAGATTCTGGAATTTATGTGTGTGAAG TGCTATGAGGATGGAAGATTCTGGTATTTATGTGTGTGAAG < 41bp 0.877321941301764 0.643128830457651 0.30755085 0.17694432 prediction 0.468386221688225 Functional Loss - VCAM1 ENSG00000162692 CDS Human protein_coding chr1:101190375 chr1:101190379 synonymous SNV . 0 25 hm5C_associated_SNPs_72418 0 0 0 0 1 VCAM1 chr1:101190446 5'GT 101190446 Upstream 68bp
chr7 31015431 31015431 1 + G A GBM 31015428 + 31015408 31015448 41 TTCTCAATATTATCCGCATCCTGGTGAGGAAACTGGAGCCA TTCTCAATATTATCCGCATCCTGATGAGGAAACTGGAGCCA < 41bp 0.751943007891665 0.517754418988724 0.8825576 0.6277709 prediction 0.468377177805883 Functional Loss - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31015428 chr7:31015431 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_72421 0 0 0 0 2 GHRHR chr7:31015392 3'AG 31015392 Downstream 40bp
chr7 31015431 31015431 1 + G A GBM 31015428 + 31015408 31015448 41 TTCTCAATATTATCCGCATCCTGGTGAGGAAACTGGAGCCA TTCTCAATATTATCCGCATCCTGATGAGGAAACTGGAGCCA < 41bp 0.751943007891665 0.517754418988724 0.8825576 0.6277709 prediction 0.468377177805883 Functional Loss - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31015428 chr7:31015431 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_72421 0 0 0 0 2 GHRHR chr7:31015483 5'GT 31015483 Upstream 53bp
chr3 129252489 129252489 1 + G T LUSC 129252486 + 129252466 129252506 41 CTCACCACCATCTGCTGCGGCAAGAACCCACTGGGTGACGA CTCACCACCATCTGCTGCGGCAATAACCCACTGGGTGACGA < 41bp 0.734184989185154 0.345046698528324 0.33132726 0.21334675 prediction 0.468369978370307 Functional Loss - RHO ENSG00000163914 CDS Human protein_coding chr3:129252486 chr3:129252489 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_72422 0 0 0 0 1 RHO chr3:129252451 3'AG 129252451 Downstream 39bp
chr6 47685075 47685075 1 + G C rs116575459 47685074 + 47685054 47685094 41 GTCTTCACTGAAGGGGAAATCGAGGGCAGCTGAGGTAAGCC GTCTTCACTGAAGGGGAAATCCAGGGCAGCTGAGGTAAGCC < 41bp 0.870510128252165 0.636327390851469 0.91889274 0.84933615 prediction 0.468365474801392 Functional Loss - ADGRF4 ENSG00000153294 CDS Human protein_coding chr6:47685074 chr6:47685075 synonymous SNV . 0 22 hm5C_associated_SNPs_72423 0 0 0 0 2 ADGRF4 chr6:47685028 3'AG 47685028 Downstream 48bp
chr6 47685075 47685075 1 + G C rs116575459 47685074 + 47685054 47685094 41 GTCTTCACTGAAGGGGAAATCGAGGGCAGCTGAGGTAAGCC GTCTTCACTGAAGGGGAAATCCAGGGCAGCTGAGGTAAGCC < 41bp 0.870510128252165 0.636327390851469 0.91889274 0.84933615 prediction 0.468365474801392 Functional Loss - ADGRF4 ENSG00000153294 CDS Human protein_coding chr6:47685074 chr6:47685075 synonymous SNV . 0 22 hm5C_associated_SNPs_72423 0 0 0 0 2 ADGRF4 chr6:47685087 5'GT 47685087 Upstream 13bp
chr16 69350235 69350235 1 + G A rs570971398 69350232 + 69350212 69350252 41 ATTTACGAAGCAAAGAGAAACACGGCAAGAAGCCAGTCAAA ATTTACGAAGCAAAGAGAAACACAGCAAGAAGCCAGTCAAA < 41bp 0.745435301825869 0.511263338266476 0.45473546 0.37539288 prediction 0.468343927118786 Functional Loss - VPS4A ENSG00000132612;ENSG00000260914 CDS Human other chr16:69350232 chr16:69350235 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_72426 0 0 1 0 1 VPS4A chr16:69350275 5'GT 69350275 Upstream 41bp
chr17 78971093 78971093 1 + T C STAD 78971092 + 78971072 78971112 41 GCTCCTGGCAGGAAGCTTCACTCAGGAGGATGAAGACGCCA GCTCCTGGCAGGAAGCTTCACCCAGGAGGATGAAGACGCCA < 41bp 0.734167767974453 0.483584400111475 0.017891139 0.029663593 prediction 0.468335535948907 Functional Loss - CHMP6 ENSG00000176108 CDS Human protein_coding chr17:78971092 chr17:78971093 synonymous SNV . 0 22 hm5C_associated_SNPs_72428 0 0 1 0 2 CHMP6 chr17:78971061 3'AG 78971061 Downstream 33bp
chr17 78971093 78971093 1 + T C STAD 78971092 + 78971072 78971112 41 GCTCCTGGCAGGAAGCTTCACTCAGGAGGATGAAGACGCCA GCTCCTGGCAGGAAGCTTCACCCAGGAGGATGAAGACGCCA < 41bp 0.734167767974453 0.483584400111475 0.017891139 0.029663593 prediction 0.468335535948907 Functional Loss - CHMP6 ENSG00000176108 CDS Human protein_coding chr17:78971092 chr17:78971093 synonymous SNV . 0 22 hm5C_associated_SNPs_72428 0 0 1 0 2 CHMP6 chr17:78971141 5'GT 78971141 Upstream 49bp
chr9 110084309 110084309 1 + C T GBM 110084307 + 110084287 110084327 41 TCAGGCTGTGGTTGACCCCCCTCAAGCAGCTAGTACTGGGG TCAGGCTGTGGTTGACCCCCCTTAAGCAGCTAGTACTGGGG < 41bp 0.734166391269376 0.440012437620785 0.19164038 0.09809998 prediction 0.468332782538752 Functional Loss - RAD23B ENSG00000119318 CDS Human protein_coding chr9:110084307 chr9:110084309 stopgain 0.819 0 23 hm5C_associated_SNPs_72429 0 0 1 0 2 RAD23B chr9:110084264 3'AG 110084264 Downstream 46bp
chr9 110084309 110084309 1 + C T GBM 110084307 + 110084287 110084327 41 TCAGGCTGTGGTTGACCCCCCTCAAGCAGCTAGTACTGGGG TCAGGCTGTGGTTGACCCCCCTTAAGCAGCTAGTACTGGGG < 41bp 0.734166391269376 0.440012437620785 0.19164038 0.09809998 prediction 0.468332782538752 Functional Loss - RAD23B ENSG00000119318 CDS Human protein_coding chr9:110084307 chr9:110084309 stopgain 0.819 0 23 hm5C_associated_SNPs_72429 0 0 1 0 2 RAD23B chr9:110084399 5'GT 110084399 Upstream 91bp
chr19 1529822 1529822 1 + G A UCEC 1529819 + 1529799 1529839 41 CTGTGCCTGGATGTAGGCCCCCCGGGTAGGAGCCGGCCCAG CTGTGCCTGGATGTAGGCCCCCCAGGTAGGAGCCGGCCCAG < 41bp 0.775841083567232 0.541675873257346 0.48418212 0.22538263 prediction 0.468330420619772 Functional Loss - PLK5 ENSG00000185988 CDS Human protein_coding chr19:1529819 chr19:1529822 synonymous SNV . 0 24 hm5C_associated_SNPs_72430 0 0 0 0 2 PLK5 chr19:1529746 3'AG 1529746 Downstream 77bp
chr19 1529822 1529822 1 + G A UCEC 1529819 + 1529799 1529839 41 CTGTGCCTGGATGTAGGCCCCCCGGGTAGGAGCCGGCCCAG CTGTGCCTGGATGTAGGCCCCCCAGGTAGGAGCCGGCCCAG < 41bp 0.775841083567232 0.541675873257346 0.48418212 0.22538263 prediction 0.468330420619772 Functional Loss - PLK5 ENSG00000185988 CDS Human protein_coding chr19:1529819 chr19:1529822 synonymous SNV . 0 24 hm5C_associated_SNPs_72430 0 0 0 0 2 PLK5 chr19:1529823 5'GT 1529823 Upstream 2bp
chr16 56862949 56862949 1 + G T LUSC 56862946 + 56862926 56862966 41 TTGCATCAGGCCCAGCTGGGCGGGGTGCCTGGGACTTACCA TTGCATCAGGCCCAGCTGGGCGGTGTGCCTGGGACTTACCA < 41bp 0.734162142370245 0.33192630249674 0.9296591 0.2590826 prediction 0.468324284740491 Functional Loss - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56862946 chr16:56862949 synonymous SNV . 0 24 hm5C_associated_SNPs_72432 0 0 1 0 2 NUP93 chr16:56862889 3'AG 56862889 Downstream 61bp
chr16 56862949 56862949 1 + G T LUSC 56862946 + 56862926 56862966 41 TTGCATCAGGCCCAGCTGGGCGGGGTGCCTGGGACTTACCA TTGCATCAGGCCCAGCTGGGCGGTGTGCCTGGGACTTACCA < 41bp 0.734162142370245 0.33192630249674 0.9296591 0.2590826 prediction 0.468324284740491 Functional Loss - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56862946 chr16:56862949 synonymous SNV . 0 24 hm5C_associated_SNPs_72432 0 0 1 0 2 NUP93 chr16:56863021 5'GT 56863021 Upstream 73bp
chr1 196789009 196789009 1 + G A rs557462560 196789006 + 196788986 196789026 41 GGTCAGTGTAATTCTAATCTCACGGATATCCTCTGTTGGGG GGTCAGTGTAATTCTAATCTCACAGATATCCTCTGTTGGGG < 41bp 0.738973505970438 0.504815479436759 0.07323113 0.047530472 prediction 0.468316053067358 Functional Loss - CFHR1 ENSG00000080910;ENSG00000244414 CDS Human other chr1:196789006 chr1:196789009 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_72433 0 0 0 0 1 CFHR1 chr1:196789032 5'GT 196789032 Upstream 24bp
chr3 183756274 183756274 1 + G A UCEC 183756271 + 183756251 183756291 41 TCTTCATCACCCACCTGCTGCACGTGGCCACCACCCAGCCC TCTTCATCACCCACCTGCTGCACATGGCCACCACCCAGCCC < 41bp 0.734138928782334 0.479678131907637 0.29072398 0.042113215 prediction 0.468277857564668 Functional Loss - HTR3D ENSG00000186090 CDS Human protein_coding chr3:183756271 chr3:183756274 nonsynonymous SNV 0.986 2 24 hm5C_associated_SNPs_72438 0 0 0 0 1 HTR3D chr3:183756197 3'AG 183756197 Downstream 78bp
chr17 26817891 26817891 1 + G A SKCM 26817888 + 26817868 26817908 41 ACAACCCCACCTTCGAGCTCCAGGAACCAAGTCCCCAGAAG ACAACCCCACCTTCGAGCTCCAGAAACCAAGTCCCCAGAAG < 41bp 0.775178705949077 0.541040762237857 0.84909606 0.5402858 prediction 0.46827588742244 Functional Loss - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26817888 chr17:26817891 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_72439 0 0 0 0 1 SLC13A2 chr17:26817924 5'GT 26817924 Upstream 34bp
chr11 111866190 111866190 1 + G A SKCM 111866187 + 111866167 111866207 41 TGCGCAACAGCTTCAGTGGCCACGATCCTCAGCACCACACT TGCGCAACAGCTTCAGTGGCCACAATCCTCAGCACCACACT < 41bp 0.747224031320222 0.513090162969856 0.10830802 0.073768824 prediction 0.468267736700732 Functional Loss - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111866187 chr11:111866190 nonsynonymous SNV 0.956 3 24 hm5C_associated_SNPs_72442 0 0 1 0 2 DIXDC1 chr11:111866127 3'AG 111866127 Downstream 64bp
chr11 111866190 111866190 1 + G A SKCM 111866187 + 111866167 111866207 41 TGCGCAACAGCTTCAGTGGCCACGATCCTCAGCACCACACT TGCGCAACAGCTTCAGTGGCCACAATCCTCAGCACCACACT < 41bp 0.747224031320222 0.513090162969856 0.10830802 0.073768824 prediction 0.468267736700732 Functional Loss - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111866187 chr11:111866190 nonsynonymous SNV 0.956 3 24 hm5C_associated_SNPs_72442 0 0 1 0 2 DIXDC1 chr11:111866288 5'GT 111866288 Upstream 99bp
chr16 27640151 27640151 1 + G T LUAD 27640148 + 27640128 27640168 41 CCTCCCACACGGAGGGGACACACGGTGAGCACAGGCCCTCC CCTCCCACACGGAGGGGACACACTGTGAGCACAGGCCCTCC < 41bp 0.734130611050169 0.340163979119516 0.25834692 0.051138908 prediction 0.468261222100338 Functional Loss - KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27640148 chr16:27640151 nonsynonymous SNV 0.389 2 24 hm5C_associated_SNPs_72443 0 0 1 0 1 KIAA0556 chr16:27640151 5'GT 27640151 Upstream 1bp
chr16 2391308 2391308 1 + G C rs75759687 2391304 + 2391284 2391324 41 GTCGAGTTTACAGGAGAAGGCGCGGTGTCCCGGGATGAGCG GTCGAGTTTACAGGAGAAGGCGCGCTGTCCCGGGATGAGCG < 41bp 0.734123495448141 0.449614604258654 0.852568 0.3179946 prediction 0.468246990896282 Functional Loss - ABCA17P ENSG00000238098 ncRNA_exonic Human transcribed_unitary_pseudogene chr16:2391304 chr16:2391308 . . 0 25 hm5C_associated_SNPs_72444 0 0 0 0 1 ABCA17P chr16:2391374 5'GT 2391374 Upstream 67bp
chr12 100784797 100784797 1 + G C LUSC 100784793 + 100784773 100784813 41 TTCCAGACAGCACAGTTTAACTGGGATCCAGAAACAGTGGG TTCCAGACAGCACAGTTTAACTGGCATCCAGAAACAGTGGG < 41bp 0.73412025501871 0.453039357423397 0.39141035 0.28252375 prediction 0.468240510037419 Functional Loss - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100784793 chr12:100784797 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_72447 0 0 1 0 1 SLC17A8 chr12:100784779 3'AG 100784779 Downstream 19bp
chr7 129938623 129938623 1 + G C BLCA 129938622 + 129938602 129938642 41 ATTAATGTCAGAAATGGAGACGAGATCAGCAAATTGAGTCA ATTAATGTCAGAAATGGAGACCAGATCAGCAAATTGAGTCA < 41bp 0.734119283882323 0.427109718864881 0.018458813 0.01823482 prediction 0.468238567764646 Functional Loss - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129938622 chr7:129938623 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_72448 0 0 0 0 2 CPA4 chr7:129938586 3'AG 129938586 Downstream 38bp
chr7 129938623 129938623 1 + G C BLCA 129938622 + 129938602 129938642 41 ATTAATGTCAGAAATGGAGACGAGATCAGCAAATTGAGTCA ATTAATGTCAGAAATGGAGACCAGATCAGCAAATTGAGTCA < 41bp 0.734119283882323 0.427109718864881 0.018458813 0.01823482 prediction 0.468238567764646 Functional Loss - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129938622 chr7:129938623 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_72448 0 0 0 0 2 CPA4 chr7:129938667 5'GT 129938667 Upstream 45bp
chr10 89503310 89503310 1 + C T rs34097979 89503308 + 89503288 89503328 41 GACTGGCGGATGAAGCAGCACGCGGCTGTGCTCGAGGAAGG GACTGGCGGATGAAGCAGCACGTGGCTGTGCTCGAGGAAGG < 41bp 0.818303218349005 0.584187921594697 0.20321688 0.16253024 prediction 0.468230593508615 Functional Loss - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89503308 chr10:89503310 nonsynonymous SNV 0.068 1 23 hm5C_associated_SNPs_72449 0 0 0 0 1 PAPSS2 chr10:89503398 5'GT 89503398 Upstream 89bp
chr4 57871482 57871482 1 + G T UCEC 57871479 + 57871459 57871499 41 TGCACTAAATTTCATTGGTTCAAGAGGAGCAAAGCCTGGTG TGCACTAAATTTCATTGGTTCAATAGGAGCAAAGCCTGGTG < 41bp 0.734114844497161 0.356166236352781 0.8431011 0.2012972 prediction 0.468229688994322 Functional Loss - POLR2B ENSG00000047315 CDS Human protein_coding chr4:57871479 chr4:57871482 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_72450 0 0 1 0 1 POLR2B chr4:57871412 3'AG 57871412 Downstream 71bp
chr12 132397757 132397757 1 + G T THYM 132397755 + 132397735 132397775 41 CCCTGCAGGTGACCTGGTGGCTGAGGCGCCCAGTGCCAAAC CCCTGCAGGTGACCTGGTGGCTTAGGCGCCCAGTGCCAAAC < 41bp 0.734112948425078 0.372556362135096 0.41231915 0.13978982 prediction 0.468225896850157 Functional Loss - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132397755 chr12:132397757 stopgain 0.244 1 23 hm5C_associated_SNPs_72451 0 0 1 0 2 ULK1 chr12:132397743 3'AG 132397743 Downstream 15bp
chr12 132397757 132397757 1 + G T THYM 132397755 + 132397735 132397775 41 CCCTGCAGGTGACCTGGTGGCTGAGGCGCCCAGTGCCAAAC CCCTGCAGGTGACCTGGTGGCTTAGGCGCCCAGTGCCAAAC < 41bp 0.734112948425078 0.372556362135096 0.41231915 0.13978982 prediction 0.468225896850157 Functional Loss - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132397755 chr12:132397757 stopgain 0.244 1 23 hm5C_associated_SNPs_72451 0 0 1 0 2 ULK1 chr12:132397803 5'GT 132397803 Upstream 47bp
chr12 6309730 6309730 1 + G T OV 6309728 + 6309708 6309748 41 TTCGGATTTAACTTCATCTTCTGGGTGAGTGAGCGCGACTG TTCGGATTTAACTTCATCTTCTTGGTGAGTGAGCGCGACTG < 41bp 0.890487742239876 0.656382540146332 0.715398 0.36848187 prediction 0.468210404187088 Functional Loss - CD9 ENSG00000010278 CDS Human protein_coding chr12:6309728 chr12:6309730 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_72453 0 0 0 0 1 CD9 chr12:6309731 5'GT 6309731 Upstream 2bp
chr14 100402463 100402463 1 + G A OV 100402460 + 100402440 100402480 41 TACACGCGAGTGGGCAAGTGCTCGGTAAGCGCTGACAGTGG TACACGCGAGTGGGCAAGTGCTCAGTAAGCGCTGACAGTGG < 41bp 0.743640258533937 0.509536928838161 0.20466658 0.19359824 prediction 0.468206659391552 Functional Loss - EML1 ENSG00000066629 CDS Human protein_coding chr14:100402460 chr14:100402463 synonymous SNV . 0 24 hm5C_associated_SNPs_72456 0 0 0 0 2 EML1 chr14:100402366 3'AG 100402366 Downstream 98bp
chr14 100402463 100402463 1 + G A OV 100402460 + 100402440 100402480 41 TACACGCGAGTGGGCAAGTGCTCGGTAAGCGCTGACAGTGG TACACGCGAGTGGGCAAGTGCTCAGTAAGCGCTGACAGTGG < 41bp 0.743640258533937 0.509536928838161 0.20466658 0.19359824 prediction 0.468206659391552 Functional Loss - EML1 ENSG00000066629 CDS Human protein_coding chr14:100402460 chr14:100402463 synonymous SNV . 0 24 hm5C_associated_SNPs_72456 0 0 0 0 2 EML1 chr14:100402463 5'GT 100402463 Upstream 1bp
chr7 129948183 129948183 1 + G T LUSC 129948181 + 129948161 129948201 41 GAAGACGCGGTCCCGAAATCCTGGAAGCTCCTGCATTGGTG GAAGACGCGGTCCCGAAATCCTTGAAGCTCCTGCATTGGTG < 41bp 0.898814449991076 0.664711431506513 0.36172056 0.16670674 prediction 0.468206036969127 Functional Loss - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129948181 chr7:129948183 stopgain 0.549 1 23 hm5C_associated_SNPs_72457 0 0 0 0 2 CPA4 chr7:129948147 3'AG 129948147 Downstream 37bp
chr7 129948183 129948183 1 + G T LUSC 129948181 + 129948161 129948201 41 GAAGACGCGGTCCCGAAATCCTGGAAGCTCCTGCATTGGTG GAAGACGCGGTCCCGAAATCCTTGAAGCTCCTGCATTGGTG < 41bp 0.898814449991076 0.664711431506513 0.36172056 0.16670674 prediction 0.468206036969127 Functional Loss - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129948181 chr7:129948183 stopgain 0.549 1 23 hm5C_associated_SNPs_72457 0 0 0 0 2 CPA4 chr7:129948237 5'GT 129948237 Upstream 55bp
chr1 20915701 20915701 1 + A C rs2072671 20915697 + 20915677 20915717 41 CTGGTTTGCTCCCAGGAGGCCAAGAAGTCAGCCTACTGCCC CTGGTTTGCTCCCAGGAGGCCAAGCAGTCAGCCTACTGCCC < 41bp 0.734099308809105 0.344050429230907 0.6629133 0.73983276 prediction 0.46819861761821 Functional Loss - CDA ENSG00000158825 CDS Human protein_coding chr1:20915697 chr1:20915701 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_72461 0 1 0 0 1 CDA chr1:20915776 5'GT 20915776 Upstream 76bp
chr1 20915700 20915700 1 + G T UCEC 20915697 + 20915677 20915717 41 CTGGTTTGCTCCCAGGAGGCCAAGAAGTCAGCCTACTGCCC CTGGTTTGCTCCCAGGAGGCCAATAAGTCAGCCTACTGCCC < 41bp 0.734099308809105 0.34650623945399 0.6629133 0.23961198 prediction 0.46819861761821 Functional Loss - CDA ENSG00000158825 CDS Human protein_coding chr1:20915697 chr1:20915700 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_72462 0 0 0 0 1 CDA chr1:20915776 5'GT 20915776 Upstream 77bp
chr12 119978481 119978481 1 + G A SKCM 119978478 + 119978458 119978498 41 TACATCAGCTGGCTGCAGAGCCGGATCAACATACCCATTGG TACATCAGCTGGCTGCAGAGCCGAATCAACATACCCATTGG < 41bp 0.750780132299651 0.516681566697755 0.8960533 0.1876241 prediction 0.468197131203792 Functional Loss - CCDC60 ENSG00000183273 CDS Human protein_coding chr12:119978478 chr12:119978481 synonymous SNV . 0 24 hm5C_associated_SNPs_72463 0 0 0 0 1 CCDC60 chr12:119978419 3'AG 119978419 Downstream 63bp
chr14 93278058 93278058 1 + G T CESC 93278055 + 93278035 93278075 41 TGAACTTGGAGTCCTCTAAGCAGGAATTAATTGACTACAAG TGAACTTGGAGTCCTCTAAGCAGTAATTAATTGACTACAAG < 41bp 0.734094208076538 0.365862683979555 0.9038985 0.3545329 prediction 0.468188416153077 Functional Loss - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93278055 chr14:93278058 stopgain 1.000 1 24 hm5C_associated_SNPs_72464 0 0 1 0 1 GOLGA5 chr14:93278099 5'GT 93278099 Upstream 42bp
chr8 145616352 145616352 1 + G A CESC 145616349 + 145616329 145616369 41 TCCAGGTGGATGAGTTGTTCCTTGAGGACTTCCAGGCCCTC TCCAGGTGGATGAGTTGTTCCTTAAGGACTTCCAGGCCCTC < 41bp 0.734088523360622 0.491547613951815 0.27694905 0.29756743 prediction 0.468177046721245 Functional Loss - ADCK5 ENSG00000173137 CDS Human protein_coding chr8:145616349 chr8:145616352 nonsynonymous SNV 0.758 1 24 hm5C_associated_SNPs_72468 0 0 0 0 1 ADCK5 chr8:145616334 3'AG 145616334 Downstream 19bp
chr18 63489423 63489423 1 + A T LUSC 63489419 + 63489399 63489439 41 TGGTCAAAATGGAGGACTGTCAGGAACTACATCAGTCACTG TGGTCAAAATGGAGGACTGTCAGGTACTACATCAGTCACTG < 41bp 0.872806804539444 0.638718315994711 0.6909792 0.77726597 prediction 0.468176977089466 Functional Loss - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63489419 chr18:63489423 synonymous SNV . 0 25 hm5C_associated_SNPs_72469 0 0 0 0 1 CDH7 chr18:63489484 5'GT 63489484 Upstream 62bp
chr14 23946717 23946717 1 + G T UCEC 23946715 + 23946695 23946735 41 TCTCCATCTGTCTCCAGGATCAGAATCCTATTAAGAAGCGG TCTCCATCTGTCTCCAGGATCATAATCCTATTAAGAAGCGG < 41bp 0.734079848479708 0.403276852896184 0.31928265 0.1699189 prediction 0.468159696959417 Functional Loss - NGDN ENSG00000129460 CDS Human protein_coding chr14:23946715 chr14:23946717 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_72472 0 0 1 0 2 NGDN chr14:23946712 3'AG 23946712 Downstream 6bp
chr14 23946717 23946717 1 + G T UCEC 23946715 + 23946695 23946735 41 TCTCCATCTGTCTCCAGGATCAGAATCCTATTAAGAAGCGG TCTCCATCTGTCTCCAGGATCATAATCCTATTAAGAAGCGG < 41bp 0.734079848479708 0.403276852896184 0.31928265 0.1699189 prediction 0.468159696959417 Functional Loss - NGDN ENSG00000129460 CDS Human protein_coding chr14:23946715 chr14:23946717 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_72472 0 0 1 0 2 NGDN chr14:23946769 5'GT 23946769 Upstream 53bp
chr11 124933303 124933303 1 + G A UCEC 124933300 + 124933280 124933320 41 CTCCGGGAGTCTGGTTCTTCCGGGCCTTCTCCAGGGACAGC CTCCGGGAGTCTGGTTCTTCCGGACCTTCTCCAGGGACAGC < 41bp 0.734064842076812 0.486630941701998 0.9205396 0.31379676 prediction 0.468129684153624 Functional Loss - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124933300 chr11:124933303 nonsynonymous SNV 0.815 0 24 hm5C_associated_SNPs_72477 0 0 0 0 1 SLC37A2 chr11:124933322 5'GT 124933322 Upstream 20bp
chr3 178927439 178927439 1 + G A UCEC 178927436 + 178927416 178927456 41 TCCTGATCTTCCTCGTGCTGCTCGACTTTGCCTTTCCATTT TCCTGATCTTCCTCGTGCTGCTCAACTTTGCCTTTCCATTT < 41bp 0.737335645387651 0.503273881788555 0.008788258 0.0099154115 prediction 0.468123527198192 Functional Loss - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178927436 chr3:178927439 nonsynonymous SNV 0.992 3 24 hm5C_associated_SNPs_72480 0 0 1 0 2 PIK3CA chr3:178927383 3'AG 178927383 Downstream 57bp
chr3 178927439 178927439 1 + G A UCEC 178927436 + 178927416 178927456 41 TCCTGATCTTCCTCGTGCTGCTCGACTTTGCCTTTCCATTT TCCTGATCTTCCTCGTGCTGCTCAACTTTGCCTTTCCATTT < 41bp 0.737335645387651 0.503273881788555 0.008788258 0.0099154115 prediction 0.468123527198192 Functional Loss - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178927436 chr3:178927439 nonsynonymous SNV 0.992 3 24 hm5C_associated_SNPs_72480 0 0 1 0 2 PIK3CA chr3:178927488 5'GT 178927488 Upstream 50bp
chr16 29852988 29852988 1 + C T rs144709938 29852986 + 29852966 29853006 41 TGTGGGAGAAAGAGCTGCCTCCCGGGGTGGAGGAGCTGCTG TGTGGGAGAAAGAGCTGCCTCCTGGGGTGGAGGAGCTGCTG < 41bp 0.813979462696881 0.579918303103221 0.26190597 0.32230806 prediction 0.468122319187319 Functional Loss - MVP ENSG00000013364 CDS Human protein_coding chr16:29852986 chr16:29852988 synonymous SNV . 0 23 hm5C_associated_SNPs_72481 0 0 1 0 1 MVP chr16:29852917 3'AG 29852917 Downstream 72bp
chr16 28509228 28509228 1 + G T LUAD 28509226 + 28509206 28509246 41 GCAGCCAACACACCAGGCCCCTGCAGAAGCTGCGCCGGAGT GCAGCCAACACACCAGGCCCCTTCAGAAGCTGCGCCGGAGT < 41bp 0.734029679640781 0.396448005913139 0.31364083 0.14856595 prediction 0.468059359281563 Functional Loss - APOBR ENSG00000184730 CDS Human protein_coding chr16:28509226 chr16:28509228 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_72492 0 0 0 0 1 APOBR chr16:28509317 5'GT 28509317 Upstream 90bp
chr1 209949039 209949039 1 + G A SKCM 209949036 + 209949016 209949056 41 AGGACCCTTGGGACCCAGCACAGGGAGCTGGAGAGCCAACT AGGACCCTTGGGACCCAGCACAGAGAGCTGGAGAGCCAACT < 41bp 0.769160772816217 0.535133348989491 0.8801486 0.50593 prediction 0.468054847653452 Functional Loss - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209949036 chr1:209949039 synonymous SNV . 0 24 hm5C_associated_SNPs_72494 0 0 0 0 2 TRAF3IP3 chr1:209948944 3'AG 209948944 Downstream 96bp
chr1 209949039 209949039 1 + G A SKCM 209949036 + 209949016 209949056 41 AGGACCCTTGGGACCCAGCACAGGGAGCTGGAGAGCCAACT AGGACCCTTGGGACCCAGCACAGAGAGCTGGAGAGCCAACT < 41bp 0.769160772816217 0.535133348989491 0.8801486 0.50593 prediction 0.468054847653452 Functional Loss - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209949036 chr1:209949039 synonymous SNV . 0 24 hm5C_associated_SNPs_72494 0 0 0 0 2 TRAF3IP3 chr1:209949081 5'GT 209949081 Upstream 43bp
chr21 43708422 43708422 1 + G A rs141061143 43708419 + 43708399 43708439 41 TTCCTCAGCATCATGAGGGACTCGGTAAGGCTGCCCGCATC TTCCTCAGCATCATGAGGGACTCAGTAAGGCTGCCCGCATC < 41bp 0.738209069770656 0.504186482103874 0.3387645 0.2137211 prediction 0.468045175333564 Functional Loss - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43708419 chr21:43708422 synonymous SNV . 0 24 hm5C_associated_SNPs_72495 0 0 0 0 1 ABCG1 chr21:43708422 5'GT 43708422 Upstream 1bp
chr17 79771449 79771449 1 + G A rs183571856 79771446 + 79771426 79771466 41 ACCACAGGGCCTCATCTTCGCCCGGCCACGGCCCTCCCAGC ACCACAGGGCCTCATCTTCGCCCAGCCACGGCCCTCCCAGC < 41bp 0.734022086403441 0.485965742517453 0.111094505 0.029760987 prediction 0.468044172806881 Functional Loss - GCGR ENSG00000215644 CDS Human protein_coding chr17:79771446 chr17:79771449 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_72496 0 0 0 0 1 GCGR chr17:79771350 3'AG 79771350 Downstream 100bp
chr8 134239723 134239723 1 + A C SKCM 134239722 + 134239702 134239742 41 TTCACACTTGCGGGCTGCATCAGCACACGCTCCTATCAACC TTCACACTTGCGGGCTGCATCCGCACACGCTCCTATCAACC < 41bp 0.781292695050838 0.547275193226942 0.5822301 0.16846743 prediction 0.468035003647793 Functional Loss - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134239722 chr8:134239723 nonsynonymous SNV 0.813 4 22 hm5C_associated_SNPs_72498 0 0 0 1 1 WISP1 chr8:134239654 3'AG 134239654 Downstream 70bp
chr5 176861939 176861939 1 + C T COAD 176861937 + 176861917 176861957 41 AGAACATCTTGCTGGATGACCACGGTGTGTAAGGGTGCCTG AGAACATCTTGCTGGATGACCATGGTGTGTAAGGGTGCCTG < 41bp 0.73401365054298 0.474439917999036 0.31742844 0.35184962 prediction 0.468027301085959 Functional Loss - GRK6 ENSG00000198055 CDS Human protein_coding chr5:176861937 chr5:176861939 synonymous SNV . 0 23 hm5C_associated_SNPs_72501 0 0 0 0 2 GRK6 chr5:176861903 3'AG 176861903 Downstream 37bp
chr5 176861939 176861939 1 + C T COAD 176861937 + 176861917 176861957 41 AGAACATCTTGCTGGATGACCACGGTGTGTAAGGGTGCCTG AGAACATCTTGCTGGATGACCATGGTGTGTAAGGGTGCCTG < 41bp 0.73401365054298 0.474439917999036 0.31742844 0.35184962 prediction 0.468027301085959 Functional Loss - GRK6 ENSG00000198055 CDS Human protein_coding chr5:176861937 chr5:176861939 synonymous SNV . 0 23 hm5C_associated_SNPs_72501 0 0 0 0 2 GRK6 chr5:176861940 5'GT 176861940 Upstream 2bp
chr14 78353513 78353513 1 + A T LUAD 78353509 + 78353489 78353529 41 CCCAGGTCCACAAGGCAGTGCTGCATGATGGGCGGACGGTG CCCAGGTCCACAAGGCAGTGCTGCTTGATGGGCGGACGGTG < 41bp 0.734001852307154 0.409909167320455 0.47030956 0.37738034 prediction 0.468003704614307 Functional Loss - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78353509 chr14:78353513 nonsynonymous SNV 0.906 0 25 hm5C_associated_SNPs_72507 0 0 0 0 2 ADCK1 chr14:78353434 3'AG 78353434 Downstream 80bp
chr14 78353513 78353513 1 + A T LUAD 78353509 + 78353489 78353529 41 CCCAGGTCCACAAGGCAGTGCTGCATGATGGGCGGACGGTG CCCAGGTCCACAAGGCAGTGCTGCTTGATGGGCGGACGGTG < 41bp 0.734001852307154 0.409909167320455 0.47030956 0.37738034 prediction 0.468003704614307 Functional Loss - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78353509 chr14:78353513 nonsynonymous SNV 0.906 0 25 hm5C_associated_SNPs_72507 0 0 0 0 2 ADCK1 chr14:78353592 5'GT 78353592 Upstream 80bp
chr19 11031515 11031515 1 + C T COAD 11031513 + 11031493 11031533 41 CTCTGTCTCTGCCATAGATACACGGGCACAACGCCCTCACC CTCTGTCTCTGCCATAGATACATGGGCACAACGCCCTCACC < 41bp 0.760632673301757 0.526633850198956 0.37317494 0.35009485 prediction 0.467997646205603 Functional Loss - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11031513 chr19:11031515 nonsynonymous SNV 0.376 3 23 hm5C_associated_SNPs_72508 0 0 1 0 1 CARM1 chr19:11031510 3'AG 11031510 Downstream 6bp
chr12 100728014 100728014 1 + A T LUAD 100728010 + 100727990 100728030 41 AGTCTGAACATAAGACTAAACTGGAGCAACTTCATATAATG AGTCTGAACATAAGACTAAACTGGTGCAACTTCATATAATG < 41bp 0.878832799062007 0.644836208139246 0.02767101 0.03848636 prediction 0.467993181845522 Functional Loss - SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100728010 chr12:100728014 nonsynonymous SNV 0.962 4 25 hm5C_associated_SNPs_72512 0 0 1 0 2 SCYL2 chr12:100727944 3'AG 100727944 Downstream 71bp
chr12 100728014 100728014 1 + A T LUAD 100728010 + 100727990 100728030 41 AGTCTGAACATAAGACTAAACTGGAGCAACTTCATATAATG AGTCTGAACATAAGACTAAACTGGTGCAACTTCATATAATG < 41bp 0.878832799062007 0.644836208139246 0.02767101 0.03848636 prediction 0.467993181845522 Functional Loss - SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100728010 chr12:100728014 nonsynonymous SNV 0.962 4 25 hm5C_associated_SNPs_72512 0 0 1 0 2 SCYL2 chr12:100728044 5'GT 100728044 Upstream 31bp
chr11 60229923 60229923 1 + G T LUSC 60229921 + 60229901 60229941 41 AGGCCCTATTGCTATGCAATCTGGTCCAAAACCACTCTTCA AGGCCCTATTGCTATGCAATCTTGTCCAAAACCACTCTTCA < 41bp 0.733996446361779 0.380055650716224 0.65463465 0.34835956 prediction 0.467992892723558 Functional Loss - MS4A1 ENSG00000156738 CDS Human protein_coding chr11:60229921 chr11:60229923 nonsynonymous SNV 0.023 0 23 hm5C_associated_SNPs_72513 0 0 0 0 3 MS4A1 chr11:60229832 3'AG 60229832 Downstream 92bp
chr11 60229923 60229923 1 + G T LUSC 60229921 + 60229901 60229941 41 AGGCCCTATTGCTATGCAATCTGGTCCAAAACCACTCTTCA AGGCCCTATTGCTATGCAATCTTGTCCAAAACCACTCTTCA < 41bp 0.733996446361779 0.380055650716224 0.65463465 0.34835956 prediction 0.467992892723558 Functional Loss - MS4A1 ENSG00000156738 CDS Human protein_coding chr11:60229921 chr11:60229923 nonsynonymous SNV 0.023 0 23 hm5C_associated_SNPs_72513 0 0 0 0 3 MS4A1 chr11:60229958 5'GT 60229958 Upstream 36bp
chr11 60229923 60229923 1 + G T LUSC 60229921 + 60229901 60229941 41 AGGCCCTATTGCTATGCAATCTGGTCCAAAACCACTCTTCA AGGCCCTATTGCTATGCAATCTTGTCCAAAACCACTCTTCA < 41bp 0.733996446361779 0.380055650716224 0.65463465 0.34835956 prediction 0.467992892723558 Functional Loss - MS4A1 ENSG00000156738 CDS Human protein_coding chr11:60229921 chr11:60229923 nonsynonymous SNV 0.023 0 23 hm5C_associated_SNPs_72513 0 0 0 0 3 MS4A1 chr11:60230006 5'GT 60230006 Upstream 84bp
chr19 17877574 17877574 1 + G A rs138314971 17877571 + 17877551 17877591 41 CGGAAGTTACAGGATCTCATCAAGGACGTTCTCCGCTACGG CGGAAGTTACAGGATCTCATCAAAGACGTTCTCCGCTACGG < 41bp 0.73399412386817 0.492434553446545 0.88846564 0.7375269 prediction 0.467988247736339 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17877571 chr19:17877574 synonymous SNV . 0 24 hm5C_associated_SNPs_72514 0 0 0 0 2 FCHO1 chr19:17877478 3'AG 17877478 Downstream 97bp
chr19 17877574 17877574 1 + G A rs138314971 17877571 + 17877551 17877591 41 CGGAAGTTACAGGATCTCATCAAGGACGTTCTCCGCTACGG CGGAAGTTACAGGATCTCATCAAAGACGTTCTCCGCTACGG < 41bp 0.73399412386817 0.492434553446545 0.88846564 0.7375269 prediction 0.467988247736339 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17877571 chr19:17877574 synonymous SNV . 0 24 hm5C_associated_SNPs_72514 0 0 0 0 2 FCHO1 chr19:17877619 5'GT 17877619 Upstream 46bp
chr3 51978147 51978147 1 + G C BRCA 51978146 + 51978126 51978166 41 ACCCTGAACCAGACCAACATCGAGAACAACAACAACAAGTT ACCCTGAACCAGACCAACATCCAGAACAACAACAACAAGTT < 41bp 0.863814182826376 0.629821711040429 0.5368977 0.31347376 prediction 0.467984943571895 Functional Loss - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51978146 chr3:51978147 nonsynonymous SNV 0.662 1 22 hm5C_associated_SNPs_72515 0 0 0 0 2 PARP3 chr3:51978105 3'AG 51978105 Downstream 43bp
chr3 51978147 51978147 1 + G C BRCA 51978146 + 51978126 51978166 41 ACCCTGAACCAGACCAACATCGAGAACAACAACAACAAGTT ACCCTGAACCAGACCAACATCCAGAACAACAACAACAAGTT < 41bp 0.863814182826376 0.629821711040429 0.5368977 0.31347376 prediction 0.467984943571895 Functional Loss - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51978146 chr3:51978147 nonsynonymous SNV 0.662 1 22 hm5C_associated_SNPs_72515 0 0 0 0 2 PARP3 chr3:51978233 5'GT 51978233 Upstream 87bp
chr1 217804749 217804749 1 + G A LUSC 217804746 + 217804726 217804766 41 CACGTTAGCCCGGCTGCAAGCTAGGTCGTCGACTGTAGGAA CACGTTAGCCCGGCTGCAAGCTAAGTCGTCGACTGTAGGAA < 41bp 0.768430900087798 0.534441299755619 0.36351502 0.2488656 prediction 0.467979200664358 Functional Loss - SPATA17 ENSG00000162814 CDS Human protein_coding chr1:217804746 chr1:217804749 nonsynonymous SNV 0.358 0 24 hm5C_associated_SNPs_72517 0 0 0 0 1 SPATA17 chr1:217804788 5'GT 217804788 Upstream 40bp
chrX 140983095 140983095 1 + G A COAD 140983092 + 140983072 140983112 41 AGGGTTCGCGGATGTGCTTTCCCGACTTGCACTGTGGGAGT AGGGTTCGCGGATGTGCTTTCCCAACTTGCACTGTGGGAGT < 41bp 0.787308326163956 0.553320336522065 0.25214285 0.22536922 prediction 0.467975979283781 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140983092 chrX:140983095 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_72518 0 0 0 0 2 MAGEC3 chrX:140983055 3'AG 140983055 Downstream 41bp
chrX 140983095 140983095 1 + G A COAD 140983092 + 140983072 140983112 41 AGGGTTCGCGGATGTGCTTTCCCGACTTGCACTGTGGGAGT AGGGTTCGCGGATGTGCTTTCCCAACTTGCACTGTGGGAGT < 41bp 0.787308326163956 0.553320336522065 0.25214285 0.22536922 prediction 0.467975979283781 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140983092 chrX:140983095 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_72518 0 0 0 0 2 MAGEC3 chrX:140983193 5'GT 140983193 Upstream 99bp
chr6 160239603 160239603 1 + G A COAD 160239600 + 160239580 160239620 41 CTTGCAGCATCGACCCCGTGCCCGAGTCATCCTTTCCTCAG CTTGCAGCATCGACCCCGTGCCCAAGTCATCCTTTCCTCAG < 41bp 0.769573200291191 0.535586294714242 0.089870214 0.029166996 prediction 0.467973811153899 Functional Loss - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160239600 chr6:160239603 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_72519 0 0 0 0 2 PNLDC1 chr6:160239587 3'AG 160239587 Downstream 17bp
chr6 160239603 160239603 1 + G A COAD 160239600 + 160239580 160239620 41 CTTGCAGCATCGACCCCGTGCCCGAGTCATCCTTTCCTCAG CTTGCAGCATCGACCCCGTGCCCAAGTCATCCTTTCCTCAG < 41bp 0.769573200291191 0.535586294714242 0.089870214 0.029166996 prediction 0.467973811153899 Functional Loss - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160239600 chr6:160239603 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_72519 0 0 0 0 2 PNLDC1 chr6:160239686 5'GT 160239686 Upstream 84bp
chr19 46020999 46020999 1 + G T PRAD 46020996 + 46020976 46021016 41 AAGCGATGGCTCCCTGCTGGCACGGGTCCCCAGGCCTTCAG AAGCGATGGCTCCCTGCTGGCACTGGTCCCCAGGCCTTCAG < 41bp 0.92341366976648 0.689431590807177 0.51003635 0.11453283 prediction 0.467964157918607 Functional Loss - VASP ENSG00000125753 CDS Human protein_coding chr19:46020996 chr19:46020999 synonymous SNV . 0 24 hm5C_associated_SNPs_72521 0 0 1 0 1 VASP chr19:46021092 5'GT 46021092 Upstream 94bp
chr3 183756259 183756259 1 + A C OV 183756255 + 183756235 183756275 41 AGCCTGCTGGAGACCATCTTCATCACCCACCTGCTGCACGT AGCCTGCTGGAGACCATCTTCATCCCCCACCTGCTGCACGT < 41bp 0.733971889566182 0.307769208972325 0.11146155 0.14536408 prediction 0.467943779132365 Functional Loss - HTR3D ENSG00000186090 CDS Human protein_coding chr3:183756255 chr3:183756259 nonsynonymous SNV 0.996 5 25 hm5C_associated_SNPs_72523 0 0 0 0 1 HTR3D chr3:183756197 3'AG 183756197 Downstream 63bp
chr22 32211195 32211195 1 + C T UCEC 32211193 + 32211173 32211213 41 CTCCTTGGGATACACCAGCACTCGAGGTAAGAGTGCTGAAG CTCCTTGGGATACACCAGCACTTGAGGTAAGAGTGCTGAAG < 41bp 0.733971686600349 0.465855587376375 0.40055126 0.35263252 prediction 0.467943373200697 Functional Loss - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32211193 chr22:32211195 stopgain 0.997 1 23 hm5C_associated_SNPs_72524 1 0 1 0 1 DEPDC5 chr22:32211198 5'GT 32211198 Upstream 4bp
chr1 228873448 228873448 1 + G A LUSC 228873445 + 228873425 228873465 41 GTGTCTGTGGATGGGCGGCCCGTGAGACTCCAACTCTGTGA GTGTCTGTGGATGGGCGGCCCGTAAGACTCCAACTCTGTGA < 41bp 0.747424368221061 0.513457418935786 0.06390402 0.009047359 prediction 0.467933898570549 Functional Loss - RHOU ENSG00000116574 CDS Human protein_coding chr1:228873445 chr1:228873448 synonymous SNV . 0 24 hm5C_associated_SNPs_72527 0 0 0 0 2 RHOU chr1:228873420 3'AG 228873420 Downstream 29bp
chr1 228873448 228873448 1 + G A LUSC 228873445 + 228873425 228873465 41 GTGTCTGTGGATGGGCGGCCCGTGAGACTCCAACTCTGTGA GTGTCTGTGGATGGGCGGCCCGTAAGACTCCAACTCTGTGA < 41bp 0.747424368221061 0.513457418935786 0.06390402 0.009047359 prediction 0.467933898570549 Functional Loss - RHOU ENSG00000116574 CDS Human protein_coding chr1:228873445 chr1:228873448 synonymous SNV . 0 24 hm5C_associated_SNPs_72527 0 0 0 0 2 RHOU chr1:228873478 5'GT 228873478 Upstream 31bp
chr3 154802003 154802003 1 + C T SKCM 154802000 + 154801980 154802020 41 GGATATAACTGATATCAACACTCCAAAGCCAAAGAAGAAAC GGATATAACTGATATCAACACTCTAAAGCCAAAGAAGAAAC < 41bp 0.745383864159105 0.511418621474477 0.94176185 0.5138913 prediction 0.467930485369256 Functional Loss - MME ENSG00000196549 CDS Human protein_coding chr3:154802000 chr3:154802003 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_72528 0 0 0 0 1 MME chr3:154801947 3'AG 154801947 Downstream 57bp
chr1 241850886 241850886 1 + C T UCEC 241850884 + 241850864 241850904 41 TTTTGGAATCCTTGAAGAGACTCGAGGATAATTTGTAAGTA TTTTGGAATCCTTGAAGAGACTTGAGGATAATTTGTAAGTA < 41bp 0.83882789850928 0.604864280507118 0.34689635 0.20564932 prediction 0.467927236004324 Functional Loss - WDR64 ENSG00000162843 CDS Human protein_coding chr1:241850884 chr1:241850886 synonymous SNV . 0 23 hm5C_associated_SNPs_72529 0 0 0 0 1 WDR64 chr1:241850897 5'GT 241850897 Upstream 12bp
chrX 153418516 153418516 1 + G A rs5986964 153418513 + 153418493 153418533 41 TTTGATGCCAAGCTGGCCATCGTGGGCATTGCCTTCTCCTG TTTGATGCCAAGCTGGCCATCGTAGGCATTGCCTTCTCCTG < 41bp 0.787118878388125 0.553155365900226 0.89593065 0.88713217 prediction 0.467927024975798 Functional Loss - OPN1LW ENSG00000102076 CDS Human protein_coding chrX:153418513 chrX:153418516 synonymous SNV . 0 24 hm5C_associated_SNPs_72530 0 0 0 0 1 OPN1LW chrX:153418581 5'GT 153418581 Upstream 66bp
chr4 187077211 187077211 1 + C T BRCA 187077209 + 187077189 187077229 41 CCGGTAGGAAATGGCGCAAACTCGGACTTCCTCCTGTTTCC CCGGTAGGAAATGGCGCAAACTTGGACTTCCTCCTGTTTCC < 41bp 0.830070741621822 0.596108223566069 0.3373348 0.24891752 prediction 0.467925036111506 Functional Loss - FAM149A ENSG00000109794 CDS Human protein_coding chr4:187077209 chr4:187077211 synonymous SNV . 0 23 hm5C_associated_SNPs_72531 0 0 0 0 1 FAM149A chr4:187077154 3'AG 187077154 Downstream 58bp
chr2 27729702 27729702 1 + G C KIRC 27729698 + 27729678 27729718 41 ACCTGGTTGGCTGGCAGACCCTGGGCATCATTGCCATCATG ACCTGGTTGGCTGGCAGACCCTGGCCATCATTGCCATCATG < 41bp 0.857332170914925 0.623370995011554 0.48493654 0.1175459 prediction 0.467922351806742 Functional Loss - GCKR ENSG00000084734 CDS Human protein_coding chr2:27729698 chr2:27729702 nonsynonymous SNV 0.907 4 25 hm5C_associated_SNPs_72534 0 0 0 0 3 GCKR chr2:27729655 3'AG 27729655 Downstream 48bp
chr2 27729702 27729702 1 + G C KIRC 27729698 + 27729678 27729718 41 ACCTGGTTGGCTGGCAGACCCTGGGCATCATTGCCATCATG ACCTGGTTGGCTGGCAGACCCTGGCCATCATTGCCATCATG < 41bp 0.857332170914925 0.623370995011554 0.48493654 0.1175459 prediction 0.467922351806742 Functional Loss - GCKR ENSG00000084734 CDS Human protein_coding chr2:27729698 chr2:27729702 nonsynonymous SNV 0.907 4 25 hm5C_associated_SNPs_72534 0 0 0 0 3 GCKR chr2:27729746 5'GT 27729746 Upstream 45bp
chr2 27729702 27729702 1 + G C KIRC 27729698 + 27729678 27729718 41 ACCTGGTTGGCTGGCAGACCCTGGGCATCATTGCCATCATG ACCTGGTTGGCTGGCAGACCCTGGCCATCATTGCCATCATG < 41bp 0.857332170914925 0.623370995011554 0.48493654 0.1175459 prediction 0.467922351806742 Functional Loss - GCKR ENSG00000084734 CDS Human protein_coding chr2:27729698 chr2:27729702 nonsynonymous SNV 0.907 4 25 hm5C_associated_SNPs_72534 0 0 0 0 3 GCKR chr2:27729752 5'GT 27729752 Upstream 51bp
chr4 81952690 81952690 1 + G T SARC 81952688 + 81952668 81952708 41 GCTCCCTGGAGGGAGGCTCGCAGCCCTGGCGCCCTCGGCTC GCTCCCTGGAGGGAGGCTCGCATCCCTGGCGCCCTCGGCTC < 41bp 0.903693329535432 0.669734278736545 0.20244789 0.06592992 prediction 0.467918101597773 Functional Loss - BMP3 ENSG00000152785 CDS Human protein_coding chr4:81952688 chr4:81952690 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_72536 0 0 0 0 1 BMP3 chr4:81952754 5'GT 81952754 Upstream 65bp
chr7 128358960 128358960 1 + T C GBM 128358959 + 128358939 128358979 41 CCTGCAGTTGAGGACAGTCACTGAGAAGATTTATTACCTAA CCTGCAGTTGAGGACAGTCACCGAGAAGATTTATTACCTAA < 41bp 0.735400709700296 0.501443959462044 0.1538476 0.1444385 prediction 0.467913500476503 Functional Loss - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128358959 chr7:128358960 synonymous SNV . 0 22 hm5C_associated_SNPs_72537 0 0 0 2 2 FAM71F1 chr7:128358885 3'AG 128358885 Downstream 76bp
chr7 128358960 128358960 1 + T C GBM 128358959 + 128358939 128358979 41 CCTGCAGTTGAGGACAGTCACTGAGAAGATTTATTACCTAA CCTGCAGTTGAGGACAGTCACCGAGAAGATTTATTACCTAA < 41bp 0.735400709700296 0.501443959462044 0.1538476 0.1444385 prediction 0.467913500476503 Functional Loss - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128358959 chr7:128358960 synonymous SNV . 0 22 hm5C_associated_SNPs_72537 0 0 0 2 2 FAM71F1 chr7:128358946 3'AG 128358946 Downstream 15bp
chr1 27675935 27675935 1 + G A rs34639587 27675932 + 27675912 27675952 41 GTCTGTGCCGAGGAGGCTGACCCGGAGCTGGAGCCCGCGTC GTCTGTGCCGAGGAGGCTGACCCAGAGCTGGAGCCCGCGTC < 41bp 0.733951237615589 0.487757421573331 0.7881415 0.7089032 prediction 0.467902475231179 Functional Loss - SYTL1 ENSG00000142765 CDS Human protein_coding chr1:27675932 chr1:27675935 synonymous SNV . 0 24 hm5C_associated_SNPs_72540 0 0 1 0 2 SYTL1 chr1:27675889 3'AG 27675889 Downstream 47bp
chr1 27675935 27675935 1 + G A rs34639587 27675932 + 27675912 27675952 41 GTCTGTGCCGAGGAGGCTGACCCGGAGCTGGAGCCCGCGTC GTCTGTGCCGAGGAGGCTGACCCAGAGCTGGAGCCCGCGTC < 41bp 0.733951237615589 0.487757421573331 0.7881415 0.7089032 prediction 0.467902475231179 Functional Loss - SYTL1 ENSG00000142765 CDS Human protein_coding chr1:27675932 chr1:27675935 synonymous SNV . 0 24 hm5C_associated_SNPs_72540 0 0 1 0 2 SYTL1 chr1:27675989 5'GT 27675989 Upstream 55bp
chr2 27560185 27560185 1 - C A LUSC 27560187 - 27560167 27560207 41 AGGCCGCTCCCTACCTGCCCCAGGAGGAGAAGTCTCCATTG AGGCCGCTCCCTACCTGCCCCATGAGGAGAAGTCTCCATTG < 41bp 0.900871990849595 0.666924158880065 0.9077269 0.061101317 prediction 0.46789566393906 Functional Loss - GTF3C2 ENSG00000115207 CDS Human protein_coding chr2:27560187 chr2:27560185 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_72541 0 0 1 0 2 GTF3C2 chr2:27560111 5'GT 27560111 Upstream 75bp
chr2 27560185 27560185 1 - C A LUSC 27560187 - 27560167 27560207 41 AGGCCGCTCCCTACCTGCCCCAGGAGGAGAAGTCTCCATTG AGGCCGCTCCCTACCTGCCCCATGAGGAGAAGTCTCCATTG < 41bp 0.900871990849595 0.666924158880065 0.9077269 0.061101317 prediction 0.46789566393906 Functional Loss - GTF3C2 ENSG00000115207 CDS Human protein_coding chr2:27560187 chr2:27560185 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_72541 0 0 1 0 2 GTF3C2 chr2:27560209 3'AG 27560209 Downstream 25bp
chr1 203465175 203465175 1 + G T COAD 203465173 + 203465153 203465193 41 TGAGTCTGCTGGCCTTGGTGCTGCAGGAGACAGGGACAGCT TGAGTCTGCTGGCCTTGGTGCTTCAGGAGACAGGGACAGCT < 41bp 0.733945633005661 0.389562789132396 0.6565698 0.6922983 prediction 0.467891266011322 Functional Loss - OPTC ENSG00000188770 CDS Human protein_coding chr1:203465173 chr1:203465175 synonymous SNV . 0 23 hm5C_associated_SNPs_72543 0 0 0 0 1 OPTC chr1:203465093 3'AG 203465093 Downstream 83bp
chr1 156124394 156124394 1 + G A UCEC 156124391 + 156124371 156124411 41 TGGCCCTCCCAGCCCTGGGCCTGGACCCCTGGAGCCTCCTG TGGCCCTCCCAGCCCTGGGCCTGAACCCCTGGAGCCTCCTG < 41bp 0.761079711551065 0.527145704684218 0.19116569 0.28007245 prediction 0.467868013733694 Functional Loss - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156124391 chr1:156124394 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_72547 0 0 0 0 1 SEMA4A chr1:156124341 3'AG 156124341 Downstream 54bp
chr7 98985759 98985759 1 + G A COAD 98985756 + 98985736 98985776 41 AAGGGCCGCACATGGAAGCCCACGCTGGTCATCCTGCGGAT AAGGGCCGCACATGGAAGCCCACACTGGTCATCCTGCGGAT < 41bp 0.733933824716555 0.481585221985088 0.11587012 0.068104565 prediction 0.46786764943311 Functional Loss - ARPC1B ENSG00000130429 CDS Human protein_coding chr7:98985756 chr7:98985759 synonymous SNV . 0 24 hm5C_associated_SNPs_72548 0 0 1 0 1 ARPC1B chr7:98985662 3'AG 98985662 Downstream 98bp
chr5 38412674 38412674 1 + C T rs16903965 38412672 + 38412652 38412692 41 ATCAAACTAGGGGGTTGGCACACGGTTATGCTCTACAGAGA ATCAAACTAGGGGGTTGGCACATGGTTATGCTCTACAGAGA < 41bp 0.733933558075238 0.453913738767806 0.42207274 0.41356492 prediction 0.467867116150477 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38412672 chr5:38412674 nonsynonymous SNV 0.035 2 23 hm5C_associated_SNPs_72549 0 0 0 0 2 EGFLAM chr5:38412606 3'AG 38412606 Downstream 69bp
chr5 38412674 38412674 1 + C T rs16903965 38412672 + 38412652 38412692 41 ATCAAACTAGGGGGTTGGCACACGGTTATGCTCTACAGAGA ATCAAACTAGGGGGTTGGCACATGGTTATGCTCTACAGAGA < 41bp 0.733933558075238 0.453913738767806 0.42207274 0.41356492 prediction 0.467867116150477 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38412672 chr5:38412674 nonsynonymous SNV 0.035 2 23 hm5C_associated_SNPs_72549 0 0 0 0 2 EGFLAM chr5:38412750 5'GT 38412750 Upstream 77bp
chr14 100182224 100182224 1 + G T COAD 100182221 + 100182201 100182241 41 CTGCGCCAGGTGGGCAGGGACTGGGTCCAGCGCCGCCGGGA CTGCGCCAGGTGGGCAGGGACTGTGTCCAGCGCCGCCGGGA < 41bp 0.92260870924158 0.688677545304177 0.9032917 0.31761965 prediction 0.467862327874808 Functional Loss - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100182221 chr14:100182224 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_72551 0 0 0 0 2 CYP46A1 chr14:100182147 3'AG 100182147 Downstream 78bp
chr14 100182224 100182224 1 + G T COAD 100182221 + 100182201 100182241 41 CTGCGCCAGGTGGGCAGGGACTGGGTCCAGCGCCGCCGGGA CTGCGCCAGGTGGGCAGGGACTGTGTCCAGCGCCGCCGGGA < 41bp 0.92260870924158 0.688677545304177 0.9032917 0.31761965 prediction 0.467862327874808 Functional Loss - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100182221 chr14:100182224 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_72551 0 0 0 0 2 CYP46A1 chr14:100182297 5'GT 100182297 Upstream 74bp
chr12 113440754 113440754 1 + G A UCEC 113440751 + 113440731 113440771 41 CCCCAGCCTGCACCACTCTTCACGACCCCAGGCCACCTTCT CCCCAGCCTGCACCACTCTTCACAACCCCAGGCCACCTTCT < 41bp 0.781343632075025 0.547412476758804 0.080485374 0.010497421 prediction 0.467862310632442 Functional Loss - OAS2 ENSG00000111335 CDS Human protein_coding chr12:113440751 chr12:113440754 synonymous SNV . 0 24 hm5C_associated_SNPs_72552 0 0 0 0 1 OAS2 chr12:113440737 3'AG 113440737 Downstream 18bp
chr16 29848061 29848061 1 + G A PRAD 29848058 + 29848038 29848078 41 TGCAGACAGCCCTGCACCTCCGGGCTCGGCGGAACTTCCGG TGCAGACAGCCCTGCACCTCCGGACTCGGCGGAACTTCCGG < 41bp 0.733919093007621 0.486087195265304 0.8804436 0.74227315 prediction 0.467838186015242 Functional Loss - MVP ENSG00000013364 CDS Human protein_coding chr16:29848058 chr16:29848061 nonsynonymous SNV 0.956 4 24 hm5C_associated_SNPs_72557 0 0 1 0 1 MVP chr16:29848043 3'AG 29848043 Downstream 19bp
chr19 11141565 11141565 1 + A C COAD 11141564 + 11141544 11141584 41 TTGACAGCGACTGGAATCCTCACCAGGTAAAAGCGGGCCGG TTGACAGCGACTGGAATCCTCCCCAGGTAAAAGCGGGCCGG < 41bp 0.733914396173093 0.488670630865751 0.19836405 0.08644655 prediction 0.467828792346186 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141564 chr19:11141565 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_72560 0 0 1 0 1 SMARCA4 chr19:11141569 5'GT 11141569 Upstream 5bp
chr14 51371081 51371081 1 + A C rs17123116 51371080 + 51371060 51371100 41 TTTCCTGAGCAAGCAGTGGTCATGAGTCTGGGAGGAGTGGA TTTCCTGAGCAAGCAGTGGTCCTGAGTCTGGGAGGAGTGGA < 41bp 0.785098912726093 0.551186715780369 0.85180163 0.44552934 prediction 0.467824393891448 Functional Loss - ABHD12B ENSG00000131969 CDS Human protein_coding chr14:51371080 chr14:51371081 synonymous SNV . 0 22 hm5C_associated_SNPs_72561 0 0 0 1 1 ABHD12B chr14:51371057 3'AG 51371057 Downstream 25bp
chr20 61929342 61929342 1 + G A PRAD 61929339 + 61929319 61929359 41 GAGAGTCGGAGGGGAGCGGCCTCGGCTACCTGGTGCAGGTG GAGAGTCGGAGGGGAGCGGCCTCAGCTACCTGGTGCAGGTG < 41bp 0.755921316705872 0.522011212183521 0.8404633 0.5845717 prediction 0.467820209044702 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61929339 chr20:61929342 nonsynonymous SNV 0.046 3 24 hm5C_associated_SNPs_72563 0 0 1 0 2 COL20A1 chr20:61929262 3'AG 61929262 Downstream 81bp
chr20 61929342 61929342 1 + G A PRAD 61929339 + 61929319 61929359 41 GAGAGTCGGAGGGGAGCGGCCTCGGCTACCTGGTGCAGGTG GAGAGTCGGAGGGGAGCGGCCTCAGCTACCTGGTGCAGGTG < 41bp 0.755921316705872 0.522011212183521 0.8404633 0.5845717 prediction 0.467820209044702 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61929339 chr20:61929342 nonsynonymous SNV 0.046 3 24 hm5C_associated_SNPs_72563 0 0 1 0 2 COL20A1 chr20:61929372 5'GT 61929372 Upstream 31bp
chr6 148841012 148841012 1 + G A rs149965187 148841009 + 148840989 148841029 41 AGGGGGAGATGAAGAAGGGTCTCGGGTCCCTAAGCCACGGG AGGGGGAGATGAAGAAGGGTCTCAGGTCCCTAAGCCACGGG < 41bp 0.767904437332486 0.533994603220888 0.6395493 0.5487416 prediction 0.467819668223197 Functional Loss - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148841009 chr6:148841012 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_72565 0 0 1 0 1 SASH1 chr6:148841029 5'GT 148841029 Upstream 18bp
chr16 30997010 30997010 1 + G A UCEC 30997007 + 30996987 30997027 41 ACTCTGCACAGGCCCAGAAGCTGGTGTACCTGGTCACAGGG ACTCTGCACAGGCCCAGAAGCTGATGTACCTGGTCACAGGG < 41bp 0.769252881692052 0.53535051635501 0.38023156 0.35075298 prediction 0.467804730674084 Functional Loss - HSD3B7 ENSG00000099377;ENSG00000268863 CDS Human other chr16:30997007 chr16:30997010 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_72568 0 0 1 0 1 HSD3B7 chr16:30996974 3'AG 30996974 Downstream 37bp
chr16 67063678 67063678 1 + C T DLBC 67063676 + 67063656 67063696 41 GCCCCACGAGGAACGCCAGGCACGCTTCCAGAACGCCTGCC GCCCCACGAGGAACGCCAGGCATGCTTCCAGAACGCCTGCC < 41bp 0.733900203857764 0.480977704096584 0.14196554 0.1996584 prediction 0.467800407715528 Functional Loss - CBFB ENSG00000067955 CDS Human protein_coding chr16:67063676 chr16:67063678 nonsynonymous SNV 0.994 1 23 hm5C_associated_SNPs_72569 0 0 1 0 2 CBFB chr16:67063630 3'AG 67063630 Downstream 49bp
chr16 67063678 67063678 1 + C T DLBC 67063676 + 67063656 67063696 41 GCCCCACGAGGAACGCCAGGCACGCTTCCAGAACGCCTGCC GCCCCACGAGGAACGCCAGGCATGCTTCCAGAACGCCTGCC < 41bp 0.733900203857764 0.480977704096584 0.14196554 0.1996584 prediction 0.467800407715528 Functional Loss - CBFB ENSG00000067955 CDS Human protein_coding chr16:67063676 chr16:67063678 nonsynonymous SNV 0.994 1 23 hm5C_associated_SNPs_72569 0 0 1 0 2 CBFB chr16:67063716 5'GT 67063716 Upstream 39bp
chr9 92280202 92280202 1 + A C rs3750543 92280201 + 92280181 92280221 41 AGCATCTGGGCTGCTGTACCCATGGTGCCTCCCAGCCCGAG AGCATCTGGGCTGCTGTACCCCTGGTGCCTCCCAGCCCGAG < 41bp 0.774255220088641 0.540355654859796 0.5736715 0.31539962 prediction 0.467799130457689 Functional Loss - UNQ6494 ENSG00000130222;ENSG00000237372 intergenic Human other chr9:92280201 chr9:92280202 . . 0 22 hm5C_associated_SNPs_72570 0 0 0 0 1 UNQ6494 chr9:92280297 5'GT 92280297 Upstream 96bp
chr9 116268695 116268695 1 + A T LUAD 116268691 + 116268671 116268711 41 GTCCGGCGGAACGGGCAGGGCTGCAGCAGCTGGACACGGTG GTCCGGCGGAACGGGCAGGGCTGCTGCAGCTGGACACGGTG < 41bp 0.73389886716755 0.423823258543241 0.60723454 0.7301757 prediction 0.467797734335099 Functional Loss - RGS3 ENSG00000138835 CDS Human protein_coding chr9:116268691 chr9:116268695 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_72572 0 0 1 0 2 RGS3 chr9:116268668 3'AG 116268668 Downstream 28bp
chr9 116268695 116268695 1 + A T LUAD 116268691 + 116268671 116268711 41 GTCCGGCGGAACGGGCAGGGCTGCAGCAGCTGGACACGGTG GTCCGGCGGAACGGGCAGGGCTGCTGCAGCTGGACACGGTG < 41bp 0.73389886716755 0.423823258543241 0.60723454 0.7301757 prediction 0.467797734335099 Functional Loss - RGS3 ENSG00000138835 CDS Human protein_coding chr9:116268691 chr9:116268695 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_72572 0 0 1 0 2 RGS3 chr9:116268773 5'GT 116268773 Upstream 79bp
chr1 165620323 165620323 1 + A C GBM 165620322 + 165620302 165620342 41 ATTCAGCGAGCCCACCAGAACACGTGAGTGTCGGCCCTGCC ATTCAGCGAGCCCACCAGAACCCGTGAGTGTCGGCCCTGCC < 41bp 0.810811189697203 0.576914463528544 0.5748525 0.39990276 prediction 0.467793452337318 Functional Loss - MGST3 ENSG00000143198 CDS Human protein_coding chr1:165620322 chr1:165620323 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_72573 0 0 1 0 2 MGST3 chr1:165620251 3'AG 165620251 Downstream 73bp
chr1 165620323 165620323 1 + A C GBM 165620322 + 165620302 165620342 41 ATTCAGCGAGCCCACCAGAACACGTGAGTGTCGGCCCTGCC ATTCAGCGAGCCCACCAGAACCCGTGAGTGTCGGCCCTGCC < 41bp 0.810811189697203 0.576914463528544 0.5748525 0.39990276 prediction 0.467793452337318 Functional Loss - MGST3 ENSG00000143198 CDS Human protein_coding chr1:165620322 chr1:165620323 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_72573 0 0 1 0 2 MGST3 chr1:165620324 5'GT 165620324 Upstream 2bp
chr7 114304449 114304449 1 + G T LUSC 114304447 + 114304427 114304467 41 GGTTCTCTGGATCACATTGACAGCAATGGAAACAGTAGTCC GGTTCTCTGGATCACATTGACATCAATGGAAACAGTAGTCC < 41bp 0.733896639983732 0.441952417852708 0.72144186 0.21636766 prediction 0.467793279967465 Functional Loss - FOXP2 ENSG00000128573 CDS Human protein_coding chr7:114304447 chr7:114304449 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_72574 0 0 0 1 1 FOXP2 chr7:114304491 5'GT 114304491 Upstream 43bp
chr17 34539766 34539766 1 + A T HNSC 34539762 + 34539742 34539782 41 TCCGGGAAGGATCCCATCCACCAGAGCTGCCCCACATGGAC TCCGGGAAGGATCCCATCCACCAGTGCTGCCCCACATGGAC < 41bp 0.846544997211604 0.61265243559514 0.20813608 0.043806165 prediction 0.467785123232929 Functional Loss - CCL4L2 ENSG00000205020 CDS Human other chr17:34539762 chr17:34539766 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_72578 0 0 0 0 1 CCL4L2 chr17:34539695 3'AG 34539695 Downstream 72bp
chr12 96350520 96350520 1 + G T LUSC 96350518 + 96350498 96350538 41 CGGAGGAGGGATCCACTTTACCGTGGAGCGCACGCGCCAAG CGGAGGAGGGATCCACTTTACCTTGGAGCGCACGCGCCAAG < 41bp 0.733891375440613 0.369601219083337 0.43367597 0.11855513 prediction 0.467782750881226 Functional Loss - AMDHD1 ENSG00000139344 CDS Human protein_coding chr12:96350518 chr12:96350520 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_72579 0 0 1 0 1 AMDHD1 chr12:96350463 3'AG 96350463 Downstream 58bp
chr5 55202092 55202092 1 + G A STAD 55202089 + 55202069 55202109 41 TTTCCTGGGAATCTGTGTCTCAGGCCACGAACTGGACGATC TTTCCTGGGAATCTGTGTCTCAGACCACGAACTGGACGATC < 41bp 0.762530477687108 0.528641863838496 0.84306705 0.4232712 prediction 0.467777227697223 Functional Loss - IL31RA ENSG00000164509 CDS Human protein_coding chr5:55202089 chr5:55202092 nonsynonymous SNV 0.994 0 24 hm5C_associated_SNPs_72580 0 0 0 0 1 IL31RA chr5:55202116 5'GT 55202116 Upstream 25bp
chr2 233990592 233990592 1 + A C rs181242219 233990588 + 233990568 233990608 41 ACCAGCCGGCCGAGCCTCTCCGAGACATTGTTCCAGCGACT ACCAGCCGGCCGAGCCTCTCCGAGCCATTGTTCCAGCGACT < 41bp 0.733886575645772 0.317264546873008 0.913802 0.9172343 prediction 0.467773151291544 Functional Loss - INPP5D ENSG00000168918 CDS Human protein_coding chr2:233990588 chr2:233990592 nonsynonymous SNV 0.003 2 25 hm5C_associated_SNPs_72581 0 0 0 0 1 INPP5D chr2:233990629 5'GT 233990629 Upstream 38bp
chr4 110897223 110897223 1 + C T UCEC 110897220 + 110897200 110897240 41 CACGAATTGAAAGTTCTTCCCTCCAAGGCCTTGGCCGTCTG CACGAATTGAAAGTTCTTCCCTCTAAGGCCTTGGCCGTCTG < 41bp 0.762345581793808 0.528463165633086 0.9721756 0.95375246 prediction 0.467764832321444 Functional Loss - EGF ENSG00000138798 CDS Human protein_coding chr4:110897220 chr4:110897223 stopgain 0.988 1 24 hm5C_associated_SNPs_72583 0 0 0 0 1 EGF chr4:110897168 3'AG 110897168 Downstream 56bp
chr19 16859997 16859997 1 + G A SKCM 16859994 + 16859974 16860014 41 GCCTGCTGAGCTCAGAGGACCGGGAACAGGGAGCCACCGTC GCCTGCTGAGCTCAGAGGACCGGAAACAGGGAGCCACCGTC < 41bp 0.748754499774144 0.514872580660124 0.9166051 0.76201737 prediction 0.467763838228042 Functional Loss - NWD1 ENSG00000188039 CDS Human protein_coding chr19:16859994 chr19:16859997 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_72584 0 0 0 0 1 NWD1 chr19:16859950 3'AG 16859950 Downstream 48bp
chr3 35723280 35723280 1 + G T LUAD 35723278 + 35723258 35723298 41 AGACCTGAATCAGGCAATAGCAGAGGAAGGAGGGACTGAGC AGACCTGAATCAGGCAATAGCATAGGAAGGAGGGACTGAGC < 41bp 0.73387976582935 0.388178655077937 0.91720915 0.70878 prediction 0.467759531658701 Functional Loss - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35723278 chr3:35723280 stopgain 0.408 1 23 hm5C_associated_SNPs_72585 0 0 0 0 2 ARPP21 chr3:35723206 3'AG 35723206 Downstream 75bp
chr3 35723280 35723280 1 + G T LUAD 35723278 + 35723258 35723298 41 AGACCTGAATCAGGCAATAGCAGAGGAAGGAGGGACTGAGC AGACCTGAATCAGGCAATAGCATAGGAAGGAGGGACTGAGC < 41bp 0.73387976582935 0.388178655077937 0.91720915 0.70878 prediction 0.467759531658701 Functional Loss - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35723278 chr3:35723280 stopgain 0.408 1 23 hm5C_associated_SNPs_72585 0 0 0 0 2 ARPP21 chr3:35723372 5'GT 35723372 Upstream 93bp
chr10 115664637 115664637 1 + A C UCEC 115664633 + 115664613 115664653 41 GCCCGTTCCTAGTAGAAAAACAGAAGACATTACCCAAACTA GCCCGTTCCTAGTAGAAAAACAGACGACATTACCCAAACTA < 41bp 0.733869970828475 0.333933055575746 0.48932824 0.31199798 prediction 0.467739941656949 Functional Loss - NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115664633 chr10:115664637 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_72588 0 0 1 2 2 NHLRC2 chr10:115664576 3'AG 115664576 Downstream 62bp
chr10 115664637 115664637 1 + A C UCEC 115664633 + 115664613 115664653 41 GCCCGTTCCTAGTAGAAAAACAGAAGACATTACCCAAACTA GCCCGTTCCTAGTAGAAAAACAGACGACATTACCCAAACTA < 41bp 0.733869970828475 0.333933055575746 0.48932824 0.31199798 prediction 0.467739941656949 Functional Loss - NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115664633 chr10:115664637 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_72588 0 0 1 2 2 NHLRC2 chr10:115664590 3'AG 115664590 Downstream 48bp
chr19 11651944 11651944 1 + G T SARC 11651941 + 11651921 11651961 41 CAGGAGCTGAGAGAGTGGATCGAGGGGGTGACAGGCCGTCG CAGGAGCTGAGAGAGTGGATCGATGGGGTGACAGGCCGTCG < 41bp 0.841901629855703 0.608035405332512 0.92876357 0.73541707 prediction 0.467732449046384 Functional Loss - CNN1 ENSG00000130176 CDS Human protein_coding chr19:11651941 chr19:11651944 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_72589 0 0 0 0 2 CNN1 chr19:11651891 3'AG 11651891 Downstream 54bp
chr19 11651944 11651944 1 + G T SARC 11651941 + 11651921 11651961 41 CAGGAGCTGAGAGAGTGGATCGAGGGGGTGACAGGCCGTCG CAGGAGCTGAGAGAGTGGATCGATGGGGTGACAGGCCGTCG < 41bp 0.841901629855703 0.608035405332512 0.92876357 0.73541707 prediction 0.467732449046384 Functional Loss - CNN1 ENSG00000130176 CDS Human protein_coding chr19:11651941 chr19:11651944 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_72589 0 0 0 0 2 CNN1 chr19:11652012 5'GT 11652012 Upstream 69bp
chr17 4352554 4352554 1 + C T LGG 4352552 + 4352532 4352572 41 GGAGTTTCGTGTGGTCGACCCTCGGAGTGACCGCCATGGCC GGAGTTTCGTGTGGTCGACCCTTGGAGTGACCGCCATGGCC < 41bp 0.810922514735992 0.577062585568071 0.39659783 0.16836154 prediction 0.467719858335844 Functional Loss - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4352552 chr17:4352554 synonymous SNV . 0 23 hm5C_associated_SNPs_72594 0 0 1 0 1 SPNS3 chr17:4352530 3'AG 4352530 Downstream 25bp
chrX 79277787 79277787 1 + G T LUSC 79277784 + 79277764 79277804 41 CAGGGATGGCTCTGAGCTCTCGGGCGCGTGCCTTCTCCGTG CAGGGATGGCTCTGAGCTCTCGGTCGCGTGCCTTCTCCGTG < 41bp 0.927739320429962 0.693883724395959 0.94596934 0.1988324 prediction 0.467711192068007 Functional Loss - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79277784 chrX:79277787 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_72596 0 0 0 0 1 TBX22 chrX:79277767 3'AG 79277767 Downstream 21bp
chr6 108497800 108497800 1 + C T UCEC 108497798 + 108497778 108497818 41 AAGGAGGAGAACGGGGCCGCCGCGCACTTTCCCTCGGCGGC AAGGAGGAGAACGGGGCCGCCGTGCACTTTCCCTCGGCGGC < 41bp 0.799748910798128 0.565896013998784 0.63761795 0.74934185 prediction 0.467705793598687 Functional Loss - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108497798 chr6:108497800 nonsynonymous SNV 0.873 0 23 hm5C_associated_SNPs_72598 0 0 0 0 1 NR2E1 chr6:108497707 3'AG 108497707 Downstream 94bp
chr1 6648899 6648899 1 + C T READ 6648897 + 6648877 6648917 41 CGAGTGTGGCTACAAGTTTACCCGACAGGTAGGCCAGGGCC CGAGTGTGGCTACAAGTTTACCTGACAGGTAGGCCAGGGCC < 41bp 0.733850907985179 0.476766408896091 0.28361863 0.23952389 prediction 0.467701815970357 Functional Loss - ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6648897 chr1:6648899 stopgain 0.944 1 23 hm5C_associated_SNPs_72599 0 0 0 0 2 ZBTB48 chr1:6648816 3'AG 6648816 Downstream 84bp
chr1 6648899 6648899 1 + C T READ 6648897 + 6648877 6648917 41 CGAGTGTGGCTACAAGTTTACCCGACAGGTAGGCCAGGGCC CGAGTGTGGCTACAAGTTTACCTGACAGGTAGGCCAGGGCC < 41bp 0.733850907985179 0.476766408896091 0.28361863 0.23952389 prediction 0.467701815970357 Functional Loss - ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6648897 chr1:6648899 stopgain 0.944 1 23 hm5C_associated_SNPs_72599 0 0 0 0 2 ZBTB48 chr1:6648904 5'GT 6648904 Upstream 6bp
chr19 48511931 48511931 1 + C T UCEC 48511929 + 48511909 48511949 41 GAAGAGGGCAGCCAAGATGACCCGATGGTCCAGTTACCTGT GAAGAGGGCAGCCAAGATGACCTGATGGTCCAGTTACCTGT < 41bp 0.733850032094162 0.464032135886378 0.2677225 0.10962981 prediction 0.467700064188324 Functional Loss - ELSPBP1 ENSG00000169393 CDS Human protein_coding chr19:48511929 chr19:48511931 stopgain 0.136 0 23 hm5C_associated_SNPs_72600 0 0 0 0 2 ELSPBP1 chr19:48511908 3'AG 48511908 Downstream 24bp
chr19 48511931 48511931 1 + C T UCEC 48511929 + 48511909 48511949 41 GAAGAGGGCAGCCAAGATGACCCGATGGTCCAGTTACCTGT GAAGAGGGCAGCCAAGATGACCTGATGGTCCAGTTACCTGT < 41bp 0.733850032094162 0.464032135886378 0.2677225 0.10962981 prediction 0.467700064188324 Functional Loss - ELSPBP1 ENSG00000169393 CDS Human protein_coding chr19:48511929 chr19:48511931 stopgain 0.136 0 23 hm5C_associated_SNPs_72600 0 0 0 0 2 ELSPBP1 chr19:48511994 5'GT 48511994 Upstream 64bp
chr1 161681011 161681011 1 + C T SKCM 161681009 + 161680989 161681029 41 GGACCATAGACTGGCTGATCCTCCAAGGTCCAGCCAAGCCA GGACCATAGACTGGCTGATCCTTCAAGGTCCAGCCAAGCCA < 41bp 0.783672002458513 0.549823648017614 0.9726357 0.07936227 prediction 0.467696708881797 Functional Loss - FCRLA ENSG00000132185 CDS Human protein_coding chr1:161681009 chr1:161681011 synonymous SNV . 0 23 hm5C_associated_SNPs_72603 0 0 1 0 1 FCRLA chr1:161680998 3'AG 161680998 Downstream 14bp
chr12 56364906 56364906 1 + G T UCEC 56364903 + 56364883 56364923 41 TCTTTCGGACTCTGGGGACCCCAGATGAGGTGGTGTGGCCA TCTTTCGGACTCTGGGGACCCCATATGAGGTGGTGTGGCCA < 41bp 0.733843673724746 0.339499330120731 0.9018204 0.9096197 prediction 0.467687347449491 Functional Loss - CDK2 ENSG00000123374 CDS Human protein_coding chr12:56364903 chr12:56364906 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_72605 0 0 1 0 1 CDK2 chr12:56364828 3'AG 56364828 Downstream 79bp
chrX 100242503 100242503 1 + C T SKCM 100242501 + 100242481 100242521 41 CCTACCTCGAGCATCTCAATCTCCAAGAATAACACAGGCTC CCTACCTCGAGCATCTCAATCTTCAAGAATAACACAGGCTC < 41bp 0.843454906417236 0.609615723341751 0.94573987 0.085906625 prediction 0.467678366150971 Functional Loss - ARL13A ENSG00000174225 CDS Human protein_coding chrX:100242501 chrX:100242503 nonsynonymous SNV 0.377 1 23 hm5C_associated_SNPs_72606 0 0 0 0 1 ARL13A chrX:100242545 5'GT 100242545 Upstream 43bp
chr10 126172863 126172863 1 + A C rs6597801 126172862 + 126172842 126172882 41 CCTGCCAGATCCTGAAGGAGCAAGGCCTGCGACCATACCTG CCTGCCAGATCCTGAAGGAGCCAGGCCTGCGACCATACCTG < 41bp 0.733838424250644 0.472591612745971 0.8289062 0.8496241 prediction 0.467676848501288 Functional Loss - LHPP ENSG00000107902 CDS Human protein_coding chr10:126172862 chr10:126172863 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_72607 0 0 0 0 1 LHPP chr10:126172895 5'GT 126172895 Upstream 33bp
chr19 4157082 4157082 1 + G A HNSC 4157079 + 4157059 4157099 41 CCAGCTCCCCACTCTGGTCCCCCGAAGGCAGTGATAGTGGC CCAGCTCCCCACTCTGGTCCCCCAAAGGCAGTGATAGTGGC < 41bp 0.733836158696882 0.497388006908052 0.26680815 0.38064662 prediction 0.467672317393764 Functional Loss - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4157079 chr19:4157082 nonsynonymous SNV 0.040 0 24 hm5C_associated_SNPs_72608 0 0 0 0 2 CREB3L3 chr19:4156992 3'AG 4156992 Downstream 91bp
chr19 4157082 4157082 1 + G A HNSC 4157079 + 4157059 4157099 41 CCAGCTCCCCACTCTGGTCCCCCGAAGGCAGTGATAGTGGC CCAGCTCCCCACTCTGGTCCCCCAAAGGCAGTGATAGTGGC < 41bp 0.733836158696882 0.497388006908052 0.26680815 0.38064662 prediction 0.467672317393764 Functional Loss - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4157079 chr19:4157082 nonsynonymous SNV 0.040 0 24 hm5C_associated_SNPs_72608 0 0 0 0 2 CREB3L3 chr19:4156995 3'AG 4156995 Downstream 88bp
chr5 180431758 180431758 1 + C T COAD 180431756 + 180431736 180431776 41 AATTGAGAGACGCCCGGAAACACGCAGGTACCAACGCCTGA AATTGAGAGACGCCCGGAAACATGCAGGTACCAACGCCTGA < 41bp 0.783600102324886 0.549766430893141 0.09180802 0.23941058 prediction 0.46766734286349 Functional Loss - BTNL3 ENSG00000168903 CDS Human protein_coding chr5:180431756 chr5:180431758 synonymous SNV . 0 23 hm5C_associated_SNPs_72609 0 0 0 0 2 BTNL3 chr5:180431736 3'AG 180431736 Downstream 23bp
chr5 180431758 180431758 1 + C T COAD 180431756 + 180431736 180431776 41 AATTGAGAGACGCCCGGAAACACGCAGGTACCAACGCCTGA AATTGAGAGACGCCCGGAAACATGCAGGTACCAACGCCTGA < 41bp 0.783600102324886 0.549766430893141 0.09180802 0.23941058 prediction 0.46766734286349 Functional Loss - BTNL3 ENSG00000168903 CDS Human protein_coding chr5:180431756 chr5:180431758 synonymous SNV . 0 23 hm5C_associated_SNPs_72609 0 0 0 0 2 BTNL3 chr5:180431762 5'GT 180431762 Upstream 5bp
chr8 35579764 35579764 1 + G T LUAD 35579761 + 35579741 35579781 41 CAGCGACATTGCTTTGTACTCGGGCTTGGGTGCTGCCGTCG CAGCGACATTGCTTTGTACTCGGTCTTGGGTGCTGCCGTCG < 41bp 0.733826855004173 0.353955069861419 0.91803485 0.46228552 prediction 0.467653710008346 Functional Loss - UNC5D ENSG00000156687 CDS Human protein_coding chr8:35579761 chr8:35579764 nonsynonymous SNV 0.952 4 24 hm5C_associated_SNPs_72612 0 0 0 0 1 UNC5D chr8:35579728 3'AG 35579728 Downstream 37bp
chr8 35579763 35579763 1 + G T LUSC 35579761 + 35579741 35579781 41 CAGCGACATTGCTTTGTACTCGGGCTTGGGTGCTGCCGTCG CAGCGACATTGCTTTGTACTCGTGCTTGGGTGCTGCCGTCG < 41bp 0.733826855004173 0.396364024290078 0.91803485 0.50050277 prediction 0.467653710008346 Functional Loss - UNC5D ENSG00000156687 CDS Human protein_coding chr8:35579761 chr8:35579763 nonsynonymous SNV 0.946 4 23 hm5C_associated_SNPs_72613 0 0 0 0 1 UNC5D chr8:35579728 3'AG 35579728 Downstream 36bp
chr1 26506964 26506964 1 + G A SKCM 26506961 + 26506941 26506981 41 CAGGTCTTGACGACTCCCTGCAGGACTATCCCTTTGAGGAC CAGGTCTTGACGACTCCCTGCAGAACTATCCCTTTGAGGAC < 41bp 0.769876251178534 0.536066792352739 0.5329195 0.18016338 prediction 0.467618917651591 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26506961 chr1:26506964 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_72621 0 0 1 0 1 CNKSR1 chr1:26506944 3'AG 26506944 Downstream 21bp
chr12 4874637 4874637 1 + G A SKCM 4874634 + 4874614 4874654 41 CGCTGCCTGACAGACCCTGGCAAGGCGGAGAAGCCCACCTT CGCTGCCTGACAGACCCTGGCAAAGCGGAGAAGCCCACCTT < 41bp 0.769594502883213 0.535787473104412 0.48759538 0.28255606 prediction 0.467614059557602 Functional Loss - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4874634 chr12:4874637 synonymous SNV . 0 24 hm5C_associated_SNPs_72622 0 0 0 0 2 GALNT8 chr12:4874545 3'AG 4874545 Downstream 93bp
chr12 4874637 4874637 1 + G A SKCM 4874634 + 4874614 4874654 41 CGCTGCCTGACAGACCCTGGCAAGGCGGAGAAGCCCACCTT CGCTGCCTGACAGACCCTGGCAAAGCGGAGAAGCCCACCTT < 41bp 0.769594502883213 0.535787473104412 0.48759538 0.28255606 prediction 0.467614059557602 Functional Loss - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4874634 chr12:4874637 synonymous SNV . 0 24 hm5C_associated_SNPs_72622 0 0 0 0 2 GALNT8 chr12:4874712 5'GT 4874712 Upstream 76bp
chr12 132605051 132605051 1 + C T rs113735087 132605049 + 132605029 132605069 41 TGCTGAAGCTGCAGGAGGCCCACGACCCAAGTCCCACTGGG TGCTGAAGCTGCAGGAGGCCCATGACCCAAGTCCCACTGGG < 41bp 0.78654715758762 0.55274105609479 0.48218012 0.7439057 prediction 0.467612202985659 Functional Loss - EP400NL ENSG00000185684 UTR3 Human protein_coding chr12:132605049 chr12:132605051 . . 0 23 hm5C_associated_SNPs_72623 0 0 1 0 2 EP400NL chr12:132604965 3'AG 132604965 Downstream 87bp
chr12 132605051 132605051 1 + C T rs113735087 132605049 + 132605029 132605069 41 TGCTGAAGCTGCAGGAGGCCCACGACCCAAGTCCCACTGGG TGCTGAAGCTGCAGGAGGCCCATGACCCAAGTCCCACTGGG < 41bp 0.78654715758762 0.55274105609479 0.48218012 0.7439057 prediction 0.467612202985659 Functional Loss - EP400NL ENSG00000185684 UTR3 Human protein_coding chr12:132605049 chr12:132605051 . . 0 23 hm5C_associated_SNPs_72623 0 0 1 0 2 EP400NL chr12:132605146 5'GT 132605146 Upstream 96bp
chr17 54450187 54450187 1 + G T SARC 54450184 + 54450164 54450204 41 GCTCTACAGACGCATGAAAACAGGCTTTGAGCATGCCAGTG GCTCTACAGACGCATGAAAACAGTCTTTGAGCATGCCAGTG < 41bp 0.733805934037712 0.348475589252186 0.8885913 0.37132168 prediction 0.467611868075424 Functional Loss - ANKFN1 ENSG00000153930 CDS Human protein_coding chr17:54450184 chr17:54450187 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_72624 0 0 0 0 1 ANKFN1 chr17:54450201 5'GT 54450201 Upstream 15bp
chr2 106690424 106690424 1 + G T LUAD 106690422 + 106690402 106690442 41 GCAGCCTGAAGCGCCAGAAGCGGCAGCTGTGGGACCGGACT GCAGCCTGAAGCGCCAGAAGCGTCAGCTGTGGGACCGGACT < 41bp 0.90405631194884 0.670253140778796 0.884233 0.22859517 prediction 0.467606342340088 Functional Loss - C2orf40 ENSG00000119147 CDS Human protein_coding chr2:106690422 chr2:106690424 synonymous SNV . 0 23 hm5C_associated_SNPs_72625 0 0 0 0 2 C2orf40 chr2:106690342 3'AG 106690342 Downstream 83bp
chr2 106690424 106690424 1 + G T LUAD 106690422 + 106690402 106690442 41 GCAGCCTGAAGCGCCAGAAGCGGCAGCTGTGGGACCGGACT GCAGCCTGAAGCGCCAGAAGCGTCAGCTGTGGGACCGGACT < 41bp 0.90405631194884 0.670253140778796 0.884233 0.22859517 prediction 0.467606342340088 Functional Loss - C2orf40 ENSG00000119147 CDS Human protein_coding chr2:106690422 chr2:106690424 synonymous SNV . 0 23 hm5C_associated_SNPs_72625 0 0 0 0 2 C2orf40 chr2:106690499 5'GT 106690499 Upstream 76bp
chr13 100635377 100635377 1 + C T rs1831992 100635375 + 100635355 100635395 41 GCTCCGAGAACCTCAAGATCCACAAAAGGACCCACACAGGT GCTCCGAGAACCTCAAGATCCATAAAAGGACCCACACAGGT < 41bp 0.733794935671767 0.479326993817525 0.011622012 0.020938545 prediction 0.467589871343534 Functional Loss - ZIC2 ENSG00000043355 CDS Human protein_coding chr13:100635375 chr13:100635377 synonymous SNV . 0 23 hm5C_associated_SNPs_72630 1 0 1 0 1 ZIC2 chr13:100635393 5'GT 100635393 Upstream 17bp
chr7 31592727 31592727 1 + C T STAD 31592725 + 31592705 31592745 41 ATCCTGAAGTGCACCAAAAGCGCGTGGGCTCCGCTGGATGA ATCCTGAAGTGCACCAAAAGCGTGTGGGCTCCGCTGGATGA < 41bp 0.810909295309688 0.577115056194937 0.38174257 0.34894952 prediction 0.467588478229503 Functional Loss - CCDC129 ENSG00000180347 CDS Human protein_coding chr7:31592725 chr7:31592727 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_72631 0 0 0 0 1 CCDC129 chr7:31592801 5'GT 31592801 Upstream 75bp
chr14 63735881 63735881 1 + G T LUAD 63735879 + 63735859 63735899 41 GCTCGGACTGTATGACACCGCGGGACAGGTACATTTTTATT GCTCGGACTGTATGACACCGCGTGACAGGTACATTTTTATT < 41bp 0.891404238691302 0.657614906374762 0.24984038 0.066951156 prediction 0.467578664633079 Functional Loss - RHOJ ENSG00000126785 CDS Human protein_coding chr14:63735879 chr14:63735881 stopgain 0.843 1 23 hm5C_associated_SNPs_72632 0 0 0 0 2 RHOJ chr14:63735828 3'AG 63735828 Downstream 54bp
chr14 63735881 63735881 1 + G T LUAD 63735879 + 63735859 63735899 41 GCTCGGACTGTATGACACCGCGGGACAGGTACATTTTTATT GCTCGGACTGTATGACACCGCGTGACAGGTACATTTTTATT < 41bp 0.891404238691302 0.657614906374762 0.24984038 0.066951156 prediction 0.467578664633079 Functional Loss - RHOJ ENSG00000126785 CDS Human protein_coding chr14:63735879 chr14:63735881 stopgain 0.843 1 23 hm5C_associated_SNPs_72632 0 0 0 0 2 RHOJ chr14:63735886 5'GT 63735886 Upstream 6bp
chr17 79770511 79770511 1 + G A rs531523452 79770508 + 79770488 79770528 41 GCTCGTGGCCAAGCTGCGGGCACGGCAGATGCACCACACAG GCTCGTGGCCAAGCTGCGGGCACAGCAGATGCACCACACAG < 41bp 0.756140954106911 0.522354840290089 0.25856358 0.13682294 prediction 0.467572227633643 Functional Loss - GCGR ENSG00000215644 CDS Human protein_coding chr17:79770508 chr17:79770511 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_72633 0 0 0 0 2 GCGR chr17:79770453 3'AG 79770453 Downstream 59bp
chr17 79770511 79770511 1 + G A rs531523452 79770508 + 79770488 79770528 41 GCTCGTGGCCAAGCTGCGGGCACGGCAGATGCACCACACAG GCTCGTGGCCAAGCTGCGGGCACAGCAGATGCACCACACAG < 41bp 0.756140954106911 0.522354840290089 0.25856358 0.13682294 prediction 0.467572227633643 Functional Loss - GCGR ENSG00000215644 CDS Human protein_coding chr17:79770508 chr17:79770511 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_72633 0 0 0 0 2 GCGR chr17:79770541 5'GT 79770541 Upstream 31bp
chr5 3600752 3600752 1 + C T STAD 3600750 + 3600730 3600770 41 CCTCGTCCCCAGGCCAGATTCGCCGGCACAGCAGTTAAAGT CCTCGTCCCCAGGCCAGATTCGTCGGCACAGCAGTTAAAGT < 41bp 0.733781593413319 0.468586678770926 0.3653573 0.45965734 prediction 0.467563186826637 Functional Loss - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3600750 chr5:3600752 nonsynonymous SNV 0.975 3 23 hm5C_associated_SNPs_72635 0 0 0 0 2 IRX1 chr5:3600723 3'AG 3600723 Downstream 30bp
chr5 3600752 3600752 1 + C T STAD 3600750 + 3600730 3600770 41 CCTCGTCCCCAGGCCAGATTCGCCGGCACAGCAGTTAAAGT CCTCGTCCCCAGGCCAGATTCGTCGGCACAGCAGTTAAAGT < 41bp 0.733781593413319 0.468586678770926 0.3653573 0.45965734 prediction 0.467563186826637 Functional Loss - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3600750 chr5:3600752 nonsynonymous SNV 0.975 3 23 hm5C_associated_SNPs_72635 0 0 0 0 2 IRX1 chr5:3600795 5'GT 3600795 Upstream 44bp
chr2 224822360 224822360 1 + C T UCEC 224822358 + 224822338 224822378 41 TTCTGCGGTGCCCGCCGCCGCCCGTGCGCCGGTAGGAGCCA TTCTGCGGTGCCCGCCGCCGCCTGTGCGCCGGTAGGAGCCA < 41bp 0.737561077601682 0.503783942889108 0.2505455 0.17741323 prediction 0.467554269425149 Functional Loss - MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224822358 chr2:224822360 synonymous SNV . 0 23 hm5C_associated_SNPs_72637 0 0 1 0 1 MRPL44 chr2:224822368 5'GT 224822368 Upstream 9bp
chrX 103294884 103294884 1 + C T SKCM 103294882 + 103294862 103294902 41 ACCAAGCGCGTGACCATCACCTCCCGGGACATCCAGATGGC ACCAAGCGCGTGACCATCACCTTCCGGGACATCCAGATGGC < 41bp 0.733777044233371 0.466452402554496 0.087162524 0.05832097 prediction 0.467554088466742 Functional Loss - H2BFM ENSG00000101812 CDS Human protein_coding chrX:103294882 chrX:103294884 nonsynonymous SNV 0.007 3 23 hm5C_associated_SNPs_72638 0 0 0 0 1 H2BFM chrX:103294971 5'GT 103294971 Upstream 88bp
chr2 95540614 95540614 1 + G T COAD 95540612 + 95540592 95540632 41 CCTCGGCCAACCTGCGGGTGCTGGTGGACTGCATCCTTCGC CCTCGGCCAACCTGCGGGTGCTTGTGGACTGCATCCTTCGC < 41bp 0.733776224148197 0.384584718531603 0.2922165 0.1268821 prediction 0.467552448296393 Functional Loss - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95540612 chr2:95540614 synonymous SNV . 0 23 hm5C_associated_SNPs_72640 0 0 0 0 1 TEKT4 chr2:95540521 3'AG 95540521 Downstream 94bp
chr11 123464858 123464858 1 + G A rs182292408 123464855 + 123464835 123464875 41 CTCTTTAAGCAGCTTCCAGACACGGAGCGCCTCATTGTTGG CTCTTTAAGCAGCTTCCAGACACAGAGCGCCTCATTGTTGG < 41bp 0.750388236556873 0.516614315928051 0.16914096 0.09538546 prediction 0.467547841257643 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123464855 chr11:123464858 synonymous SNV . 0 24 hm5C_associated_SNPs_72643 0 0 0 0 2 GRAMD1B chr11:123464790 3'AG 123464790 Downstream 69bp
chr11 123464858 123464858 1 + G A rs182292408 123464855 + 123464835 123464875 41 CTCTTTAAGCAGCTTCCAGACACGGAGCGCCTCATTGTTGG CTCTTTAAGCAGCTTCCAGACACAGAGCGCCTCATTGTTGG < 41bp 0.750388236556873 0.516614315928051 0.16914096 0.09538546 prediction 0.467547841257643 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123464855 chr11:123464858 synonymous SNV . 0 24 hm5C_associated_SNPs_72643 0 0 0 0 2 GRAMD1B chr11:123464874 5'GT 123464874 Upstream 17bp
chrX 13621517 13621517 1 + C T LUSC 13621515 + 13621495 13621535 41 CCACAGTGCCTGTGTCCATCCTCAGGACTCCGCCTGGCCCC CCACAGTGCCTGTGTCCATCCTTAGGACTCCGCCTGGCCCC < 41bp 0.840757135004386 0.606988608461006 0.045841426 0.027859569 prediction 0.467537053086761 Functional Loss - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13621515 chrX:13621517 nonsynonymous SNV 0.420 1 23 hm5C_associated_SNPs_72645 0 0 0 0 2 EGFL6 chrX:13621436 3'AG 13621436 Downstream 82bp
chrX 13621517 13621517 1 + C T LUSC 13621515 + 13621495 13621535 41 CCACAGTGCCTGTGTCCATCCTCAGGACTCCGCCTGGCCCC CCACAGTGCCTGTGTCCATCCTTAGGACTCCGCCTGGCCCC < 41bp 0.840757135004386 0.606988608461006 0.045841426 0.027859569 prediction 0.467537053086761 Functional Loss - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13621515 chrX:13621517 nonsynonymous SNV 0.420 1 23 hm5C_associated_SNPs_72645 0 0 0 0 2 EGFL6 chrX:13621555 5'GT 13621555 Upstream 39bp
chr17 28890263 28890263 1 + C T UCEC 28890261 + 28890241 28890281 41 CCAGACCCATTTGTGAGAGCCTCCACTCCTCCCTGCAAGCG CCAGACCCATTTGTGAGAGCCTTCACTCCTCCCTGCAAGCG < 41bp 0.733767489814096 0.457806882495098 0.9200231 0.09362942 prediction 0.467534979628191 Functional Loss - TBC1D29 ENSG00000266733 CDS Human protein_coding chr17:28890261 chr17:28890263 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_72647 0 0 0 0 1 TBC1D29 chr17:28890218 3'AG 28890218 Downstream 46bp
chr19 6750366 6750366 1 + G A LUAD 6750363 + 6750343 6750383 41 GGGGAGACAGCCTGAGCCGGCACGCCCGGCCTCCCGACCCC GGGGAGACAGCCTGAGCCGGCACACCCGGCCTCCCGACCCC < 41bp 0.733765741436876 0.47919713840291 0.1607188 0.106588006 prediction 0.467531482873752 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6750363 chr19:6750366 nonsynonymous SNV 0.810 0 24 hm5C_associated_SNPs_72648 0 0 1 0 2 TRIP10 chr19:6750303 3'AG 6750303 Downstream 64bp
chr19 6750366 6750366 1 + G A LUAD 6750363 + 6750343 6750383 41 GGGGAGACAGCCTGAGCCGGCACGCCCGGCCTCCCGACCCC GGGGAGACAGCCTGAGCCGGCACACCCGGCCTCCCGACCCC < 41bp 0.733765741436876 0.47919713840291 0.1607188 0.106588006 prediction 0.467531482873752 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6750363 chr19:6750366 nonsynonymous SNV 0.810 0 24 hm5C_associated_SNPs_72648 0 0 1 0 2 TRIP10 chr19:6750442 5'GT 6750442 Upstream 77bp
chr10 33134530 33134530 1 + A C KIRC 33134529 + 33134509 33134549 41 GGTCTAATGAAGGAGTCAACCACGACACAATTAAAAAGTCA GGTCTAATGAAGGAGTCAACCCCGACACAATTAAAAAGTCA < 41bp 0.749292644912431 0.515526921182624 0.22205779 0.14107126 prediction 0.467531447459615 Functional Loss - CCDC7 ENSG00000150076 CDS Human other chr10:33134529 chr10:33134530 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_72649 0 0 0 1 2 CCDC7 chr10:33134471 3'AG 33134471 Downstream 60bp
chr10 33134530 33134530 1 + A C KIRC 33134529 + 33134509 33134549 41 GGTCTAATGAAGGAGTCAACCACGACACAATTAAAAAGTCA GGTCTAATGAAGGAGTCAACCCCGACACAATTAAAAAGTCA < 41bp 0.749292644912431 0.515526921182624 0.22205779 0.14107126 prediction 0.467531447459615 Functional Loss - CCDC7 ENSG00000150076 CDS Human other chr10:33134529 chr10:33134530 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_72649 0 0 0 1 2 CCDC7 chr10:33134554 5'GT 33134554 Upstream 25bp
chr6 7602909 7602909 1 + G T GBM 7602906 + 7602886 7602926 41 TTGAAATCCTGGCAGAAGTACGAGATTATAAAAGAAGACGC TTGAAATCCTGGCAGAAGTACGATATTATAAAAGAAGACGC < 41bp 0.733763550135717 0.368007044398878 0.5320799 0.2593524 prediction 0.467527100271434 Functional Loss - SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7602906 chr6:7602909 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_72650 0 0 0 0 1 SNRNP48 chr6:7602977 5'GT 7602977 Upstream 69bp
chr16 30783205 30783205 1 + G A COAD 30783202 + 30783182 30783222 41 ACCTGAAGGTGCAGCTGGAGCACGTGCAGACTCGGCTGCGG ACCTGAAGGTGCAGCTGGAGCACATGCAGACTCGGCTGCGG < 41bp 0.749567734724496 0.51581700641628 0.19356582 0.18660197 prediction 0.467501456616431 Functional Loss - RNF40 ENSG00000103549 CDS Human protein_coding chr16:30783202 chr16:30783205 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_72654 0 0 1 0 2 RNF40 chr16:30783154 3'AG 30783154 Downstream 52bp
chr16 30783205 30783205 1 + G A COAD 30783202 + 30783182 30783222 41 ACCTGAAGGTGCAGCTGGAGCACGTGCAGACTCGGCTGCGG ACCTGAAGGTGCAGCTGGAGCACATGCAGACTCGGCTGCGG < 41bp 0.749567734724496 0.51581700641628 0.19356582 0.18660197 prediction 0.467501456616431 Functional Loss - RNF40 ENSG00000103549 CDS Human protein_coding chr16:30783202 chr16:30783205 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_72654 0 0 1 0 2 RNF40 chr16:30783294 5'GT 30783294 Upstream 90bp
chr3 186299271 186299271 1 + G C SARC 186299267 + 186299247 186299287 41 CCTGGGCGCTTCCAAATGACCCAGGAGGTGGTCTGCGACGA CCTGGGCGCTTCCAAATGACCCAGCAGGTGGTCTGCGACGA < 41bp 0.733748522795469 0.452717469487976 0.14979929 0.054683417 prediction 0.467497045590937 Functional Loss - DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186299267 chr3:186299271 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_72656 0 0 1 0 1 DNAJB11 chr3:186299302 5'GT 186299302 Upstream 32bp
chr10 129845924 129845924 1 + G A rs41282856 129845921 + 129845901 129845941 41 CGCGGCTCAGCCATGAGCAACAGGAGTAGCTTTTCCCGGCT CGCGGCTCAGCCATGAGCAACAGAAGTAGCTTTTCCCGGCT < 41bp 0.7510122470874 0.517264234939205 0.92298406 0.9068037 prediction 0.467496024296391 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129845921 chr10:129845924 synonymous SNV . 0 24 hm5C_associated_SNPs_72657 0 0 0 0 1 PTPRE chr10:129845947 5'GT 129845947 Upstream 24bp
chr17 694808 694808 1 + G A rs543556679 694805 + 694785 694825 41 GCCTGGGAGCCCAAAGTGCTCCGGGCGGGTATGGGCGCACA GCCTGGGAGCCCAAAGTGCTCCGAGCGGGTATGGGCGCACA < 41bp 0.739176251042085 0.505428989384285 0.41096303 0.22604889 prediction 0.4674945233156 Functional Loss - MRM3 ENSG00000171861 CDS Human protein_coding chr17:694805 chr17:694808 synonymous SNV . 0 24 hm5C_associated_SNPs_72658 0 0 1 0 1 MRM3 chr17:694774 3'AG 694774 Downstream 35bp
chr5 156727797 156727797 1 + T C ESCA 156727796 + 156727776 156727816 41 GCGCAGGAAGGACTTTGTCTCTGAGGCCTACCTCCTGACCC GCGCAGGAAGGACTTTGTCTCCGAGGCCTACCTCCTGACCC < 41bp 0.745496660608694 0.51175419691627 0.8848505 0.9286062 prediction 0.467484927384847 Functional Loss - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156727796 chr5:156727797 synonymous SNV . 0 22 hm5C_associated_SNPs_72662 0 0 1 0 1 CYFIP2 chr5:156727723 3'AG 156727723 Downstream 75bp
chr2 242509546 242509546 1 + C T UCEC 242509544 + 242509524 242509564 41 ATCTCTCTCCCTGCAGGCATCACGTGGGGCAAGGTGGTGTC ATCTCTCTCCCTGCAGGCATCATGTGGGGCAAGGTGGTGTC < 41bp 0.796963906410932 0.563221668644696 0.86748004 0.82533735 prediction 0.467484475532472 Functional Loss - BOK ENSG00000176720 CDS Human protein_coding chr2:242509544 chr2:242509546 nonsynonymous SNV 0.635 4 23 hm5C_associated_SNPs_72663 0 0 1 0 1 BOK chr2:242509540 3'AG 242509540 Downstream 7bp
chr6 405041 405041 1 + G A ESCA 405038 + 405018 405058 41 AGCTGCAAGCGTTTGCTCACCACGGCCGCTCCCTGCCAAGA AGCTGCAAGCGTTTGCTCACCACAGCCGCTCCCTGCCAAGA < 41bp 0.765506236439078 0.531764118324214 0.8674977 0.43570825 prediction 0.467484236229728 Functional Loss - IRF4 ENSG00000137265 CDS Human protein_coding chr6:405038 chr6:405041 nonsynonymous SNV 0.360 1 24 hm5C_associated_SNPs_72664 0 0 0 0 2 IRF4 chr6:405018 3'AG 405018 Downstream 24bp
chr6 405041 405041 1 + G A ESCA 405038 + 405018 405058 41 AGCTGCAAGCGTTTGCTCACCACGGCCGCTCCCTGCCAAGA AGCTGCAAGCGTTTGCTCACCACAGCCGCTCCCTGCCAAGA < 41bp 0.765506236439078 0.531764118324214 0.8674977 0.43570825 prediction 0.467484236229728 Functional Loss - IRF4 ENSG00000137265 CDS Human protein_coding chr6:405038 chr6:405041 nonsynonymous SNV 0.360 1 24 hm5C_associated_SNPs_72664 0 0 0 0 2 IRF4 chr6:405130 5'GT 405130 Upstream 90bp
chr19 7591409 7591409 1 + G T LUSC 7591406 + 7591386 7591426 41 CCTTCCGACACCTCTTCCTGCTGGGCTACTCGGACGGAGCG CCTTCCGACACCTCTTCCTGCTGTGCTACTCGGACGGAGCG < 41bp 0.733742058402499 0.452407428600893 0.21476033 0.05238691 prediction 0.467484116804997 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7591406 chr19:7591409 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_72665 0 0 0 0 2 MCOLN1 chr19:7591325 3'AG 7591325 Downstream 85bp
chr19 7591409 7591409 1 + G T LUSC 7591406 + 7591386 7591426 41 CCTTCCGACACCTCTTCCTGCTGGGCTACTCGGACGGAGCG CCTTCCGACACCTCTTCCTGCTGTGCTACTCGGACGGAGCG < 41bp 0.733742058402499 0.452407428600893 0.21476033 0.05238691 prediction 0.467484116804997 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7591406 chr19:7591409 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_72665 0 0 0 0 2 MCOLN1 chr19:7591492 5'GT 7591492 Upstream 84bp
chr1 150049214 150049214 1 + G A COAD 150049211 + 150049191 150049231 41 CCCAGCTATCTAGAACAACTCAAGGGCTTACAGCTCTCCTT CCCAGCTATCTAGAACAACTCAAAGGCTTACAGCTCTCCTT < 41bp 0.733738138631689 0.500004192316158 0.89464223 0.40476942 prediction 0.467467892631061 Functional Loss - VPS45 ENSG00000136631 CDS Human protein_coding chr1:150049211 chr1:150049214 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_72670 0 0 1 0 1 VPS45 chr1:150049309 5'GT 150049309 Upstream 96bp
chr1 43779520 43779520 1 + G A SKCM 43779517 + 43779497 43779537 41 GCCTGGATCAGCAGCTGATCCTGGCGGTGGTGGGCTCCGTG GCCTGGATCAGCAGCTGATCCTGACGGTGGTGGGCTCCGTG < 41bp 0.733732218777917 0.495559199293201 0.9267843 0.9073477 prediction 0.467464437555834 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43779517 chr1:43779520 nonsynonymous SNV 0.989 3 24 hm5C_associated_SNPs_72671 0 0 0 0 1 TIE1 chr1:43779449 3'AG 43779449 Downstream 72bp
chr20 57598802 57598802 1 + C T PAAD 57598800 + 57598780 57598820 41 AACTGGGCCAAAGGCCACTACACGGAGGGAGCCGAGCTGAT AACTGGGCCAAAGGCCACTACATGGAGGGAGCCGAGCTGAT < 41bp 0.803140382755543 0.56941380285185 0.8942943 0.9091643 prediction 0.467453159807387 Functional Loss - TUBB1 ENSG00000101162 CDS Human protein_coding chr20:57598800 chr20:57598802 nonsynonymous SNV 0.882 4 23 hm5C_associated_SNPs_72675 0 0 1 0 1 TUBB1 chr20:57598760 3'AG 57598760 Downstream 43bp
chr18 72173101 72173101 1 + G C STAD 72173097 + 72173077 72173117 41 TGCTCAGCTCCCTGATGGCTCGGAGATCCCGCTCCCTCCTA TGCTCAGCTCCCTGATGGCTCGGACATCCCGCTCCCTCCTA < 41bp 0.733726519412227 0.422142070325163 0.88467014 0.12725905 prediction 0.467453038824453 Functional Loss - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72173097 chr18:72173101 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_72676 0 0 1 0 1 CNDP2 chr18:72173084 3'AG 72173084 Downstream 18bp
chr4 187195366 187195366 1 + C T COAD 187195364 + 187195344 187195384 41 CAAGAATGCCAAGAAAGATGCACGGATGACGTCCACTGCCA CAAGAATGCCAAGAAAGATGCATGGATGACGTCCACTGCCA < 41bp 0.820689377276731 0.586964349402173 0.51480186 0.43062076 prediction 0.467450055749117 Functional Loss - F11 ENSG00000088926 CDS Human protein_coding chr4:187195364 chr4:187195366 nonsynonymous SNV 0.449 5 23 hm5C_associated_SNPs_72677 0 0 0 0 2 F11 chr4:187195270 3'AG 187195270 Downstream 97bp
chr4 187195366 187195366 1 + C T COAD 187195364 + 187195344 187195384 41 CAAGAATGCCAAGAAAGATGCACGGATGACGTCCACTGCCA CAAGAATGCCAAGAAAGATGCATGGATGACGTCCACTGCCA < 41bp 0.820689377276731 0.586964349402173 0.51480186 0.43062076 prediction 0.467450055749117 Functional Loss - F11 ENSG00000088926 CDS Human protein_coding chr4:187195364 chr4:187195366 nonsynonymous SNV 0.449 5 23 hm5C_associated_SNPs_72677 0 0 0 0 2 F11 chr4:187195429 5'GT 187195429 Upstream 64bp
chr19 41622461 41622461 1 + G T SKCM 41622459 + 41622439 41622479 41 TGAAGGAGGCCCTGGTGGACCAGGGAGAGGAGTTTAGTGGC TGAAGGAGGCCCTGGTGGACCATGGAGAGGAGTTTAGTGGC < 41bp 0.90799008575309 0.674270273709188 0.87659955 0.57697463 prediction 0.467439624087803 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41622459 chr19:41622461 nonsynonymous SNV 0.063 2 23 hm5C_associated_SNPs_72678 0 0 0 0 1 CYP2F1 chr19:41622522 5'GT 41622522 Upstream 62bp
chr6 108497731 108497731 1 + G A UCEC 108497728 + 108497708 108497748 41 CGTGCAGCACGAGCGGGGGCCTCGGACGTCCACCATCCGCA CGTGCAGCACGAGCGGGGGCCTCAGACGTCCACCATCCGCA < 41bp 0.778985032614052 0.545270479867797 0.90017784 0.8673505 prediction 0.46742910549251 Functional Loss - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108497728 chr6:108497731 nonsynonymous SNV 0.231 4 24 hm5C_associated_SNPs_72679 0 0 0 0 1 NR2E1 chr6:108497707 3'AG 108497707 Downstream 25bp
chr17 56277722 56277722 1 + C T UCEC 56277720 + 56277700 56277740 41 TTGGGCTGGACCTGGCAGCTCTCAACATGCAACGAAGCCGG TTGGGCTGGACCTGGCAGCTCTTAACATGCAACGAAGCCGG < 41bp 0.733712557577384 0.451963569934773 0.32417232 0.3398881 prediction 0.467425115154767 Functional Loss - EPX ENSG00000121053 CDS Human protein_coding chr17:56277720 chr17:56277722 synonymous SNV . 0 23 hm5C_associated_SNPs_72680 0 0 0 0 1 EPX chr17:56277756 5'GT 56277756 Upstream 35bp
chr5 5303784 5303784 1 + A T BLCA 5303780 + 5303760 5303800 41 CAGCTGCTGCCCGACGCTGTCTGCACCTCCGAGCCCAAGCC CAGCTGCTGCCCGACGCTGTCTGCTCCTCCGAGCCCAAGCC < 41bp 0.733710222846111 0.398532383190232 0.10377535 0.06644812 prediction 0.467420445692223 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5303780 chr5:5303784 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_72681 0 0 0 0 2 ADAMTS16 chr5:5303685 3'AG 5303685 Downstream 100bp
chr5 5303784 5303784 1 + A T BLCA 5303780 + 5303760 5303800 41 CAGCTGCTGCCCGACGCTGTCTGCACCTCCGAGCCCAAGCC CAGCTGCTGCCCGACGCTGTCTGCTCCTCCGAGCCCAAGCC < 41bp 0.733710222846111 0.398532383190232 0.10377535 0.06644812 prediction 0.467420445692223 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5303780 chr5:5303784 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_72681 0 0 0 0 2 ADAMTS16 chr5:5303879 5'GT 5303879 Upstream 96bp
chr9 136516814 136516814 1 + G A SKCM 136516811 + 136516791 136516831 41 TCAGCTCCACACACACCTGACTGGGAGAAAGGTGGTCACAG TCAGCTCCACACACACCTGACTGAGAGAAAGGTGGTCACAG < 41bp 0.753313974753908 0.519604842843297 0.0920046 0.06309584 prediction 0.467418263821221 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136516811 chr9:136516814 nonsynonymous SNV 0.443 5 24 hm5C_associated_SNPs_72682 0 0 0 0 2 DBH chr9:136516756 3'AG 136516756 Downstream 59bp
chr9 136516814 136516814 1 + G A SKCM 136516811 + 136516791 136516831 41 TCAGCTCCACACACACCTGACTGGGAGAAAGGTGGTCACAG TCAGCTCCACACACACCTGACTGAGAGAAAGGTGGTCACAG < 41bp 0.753313974753908 0.519604842843297 0.0920046 0.06309584 prediction 0.467418263821221 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136516811 chr9:136516814 nonsynonymous SNV 0.443 5 24 hm5C_associated_SNPs_72682 0 0 0 0 2 DBH chr9:136516899 5'GT 136516899 Upstream 86bp
chr1 46976908 46976908 1 + G T LUSC 46976905 + 46976885 46976925 41 CCCCAAAGCTGAGAAGAGCCCTGGGGCTGACAGCAAGGGGC CCCCAAAGCTGAGAAGAGCCCTGTGGCTGACAGCAAGGGGC < 41bp 0.926365791668208 0.692658365099492 0.43467224 0.26154834 prediction 0.467414853137431 Functional Loss - DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46976905 chr1:46976908 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_72683 0 0 0 0 1 DMBX1 chr1:46976955 5'GT 46976955 Upstream 48bp
chr19 7523519 7523519 1 + C T BLCA 7523517 + 7523497 7523537 41 CCGGAGATGTATGAAATCTACACGAGCTCCAAAGAGGACAG CCGGAGATGTATGAAATCTACATGAGCTCCAAAGAGGACAG < 41bp 0.832483271487758 0.598776467845795 0.14678979 0.10679817 prediction 0.467413607283926 Functional Loss - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7523517 chr19:7523519 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_72684 0 0 1 0 1 ARHGEF18 chr19:7523576 5'GT 7523576 Upstream 58bp
chr19 36038064 36038064 1 + G A UCEC 36038061 + 36038041 36038081 41 TGCTCAGGTCTGGATGATAACACGCTATGATCTGTACCACA TGCTCAGGTCTGGATGATAACACACTATGATCTGTACCACA < 41bp 0.733698568326475 0.492626424158407 0.13456497 0.1527077 prediction 0.46739713665295 Functional Loss - TMEM147 ENSG00000105677 CDS Human protein_coding chr19:36038061 chr19:36038064 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_72685 0 0 1 0 2 TMEM147 chr19:36038021 3'AG 36038021 Downstream 44bp
chr19 36038064 36038064 1 + G A UCEC 36038061 + 36038041 36038081 41 TGCTCAGGTCTGGATGATAACACGCTATGATCTGTACCACA TGCTCAGGTCTGGATGATAACACACTATGATCTGTACCACA < 41bp 0.733698568326475 0.492626424158407 0.13456497 0.1527077 prediction 0.46739713665295 Functional Loss - TMEM147 ENSG00000105677 CDS Human protein_coding chr19:36038061 chr19:36038064 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_72685 0 0 1 0 2 TMEM147 chr19:36038142 5'GT 36038142 Upstream 79bp
chr5 149918868 149918868 1 + G T ESCA 149918865 + 149918845 149918885 41 ACCCTGGCGGCTCCAGTGAGCTGGACAAGATCATCAACGGG ACCCTGGCGGCTCCAGTGAGCTGTACAAGATCATCAACGGG < 41bp 0.73369821393918 0.335383633154099 0.15035051 0.10032013 prediction 0.46739642787836 Functional Loss - NDST1 ENSG00000070614 CDS Human protein_coding chr5:149918865 chr5:149918868 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_72686 0 0 1 0 2 NDST1 chr5:149918790 3'AG 149918790 Downstream 79bp
chr5 149918868 149918868 1 + G T ESCA 149918865 + 149918845 149918885 41 ACCCTGGCGGCTCCAGTGAGCTGGACAAGATCATCAACGGG ACCCTGGCGGCTCCAGTGAGCTGTACAAGATCATCAACGGG < 41bp 0.73369821393918 0.335383633154099 0.15035051 0.10032013 prediction 0.46739642787836 Functional Loss - NDST1 ENSG00000070614 CDS Human protein_coding chr5:149918865 chr5:149918868 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_72686 0 0 1 0 2 NDST1 chr5:149918918 5'GT 149918918 Upstream 51bp
chr4 76708240 76708240 1 + C T BRCA 76708238 + 76708218 76708258 41 GTTCGTGTATTGGTATCTCCCACCAACCCTCCTGGTGCTAC GTTCGTGTATTGGTATCTCCCATCAACCCTCCTGGTGCTAC < 41bp 0.848141918590883 0.614444284768675 0.042922437 0.042295992 prediction 0.467395267644415 Functional Loss - USO1 ENSG00000138768 CDS Human protein_coding chr4:76708238 chr4:76708240 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_72687 0 0 1 0 1 USO1 chr4:76708215 3'AG 76708215 Downstream 26bp
chr2 105122721 105122721 1 + C T rs574077918 105122719 + 105122699 105122739 41 TCTAAGCCAGGTCTGACAGACTCCAAAGCAAGCCCTGTTTA TCTAAGCCAGGTCTGACAGACTTCAAAGCAAGCCCTGTTTA < 41bp 0.777569375207525 0.543872126024672 0.9545267 0.27454758 prediction 0.467394498365704 Functional Loss - LINC01102 ENSG00000235597 ncRNA_exonic Human lincRNA chr2:105122719 chr2:105122721 . . 0 23 hm5C_associated_SNPs_72688 0 0 0 6 1 LINC01102 chr2:105122761 5'GT 105122761 Upstream 41bp
chr2 149243425 149243425 1 + A C HNSC 149243424 + 149243404 149243444 41 AGCAACAGCAGCAACTTCTCCAGGGGTACCAGAATCTCCAG AGCAACAGCAGCAACTTCTCCCGGGGTACCAGAATCTCCAG < 41bp 0.733692984347321 0.483359524457456 0.93851125 0.944373 prediction 0.467385968694641 Functional Loss - MBD5 ENSG00000204406 CDS Human protein_coding chr2:149243424 chr2:149243425 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_72692 0 0 0 0 1 MBD5 chr2:149243519 5'GT 149243519 Upstream 95bp
chr9 139872093 139872093 1 + G T COAD 139872091 + 139872071 139872111 41 TGGGGGTGCTGGGCGACCTGCAGGCAGCACCGGAGGCCCAG TGGGGGTGCTGGGCGACCTGCATGCAGCACCGGAGGCCCAG < 41bp 0.733692958380237 0.370537571276488 0.6996403 0.10302165 prediction 0.467385916760475 Functional Loss - PTGDS ENSG00000107317 CDS Human protein_coding chr9:139872091 chr9:139872093 nonsynonymous SNV 0.014 0 23 hm5C_associated_SNPs_72693 0 0 1 0 1 PTGDS chr9:139872144 5'GT 139872144 Upstream 52bp
chr11 13729478 13729478 1 + C T UCEC 13729476 + 13729456 13729496 41 TCAGTTAAATGTGATTGCAACGCGACAGCTTATTCTCCTTG TCAGTTAAATGTGATTGCAACGTGACAGCTTATTCTCCTTG < 41bp 0.733689410131369 0.45148753111632 0.27298805 0.121889025 prediction 0.467378820262737 Functional Loss - FAR1 ENSG00000197601 CDS Human protein_coding chr11:13729476 chr11:13729478 stopgain 0.327 0 23 hm5C_associated_SNPs_72695 0 0 1 0 1 FAR1 chr11:13729447 3'AG 13729447 Downstream 32bp
chr2 27163008 27163008 1 + G T LUAD 27163005 + 27162985 27163025 41 CACATGGAGTGAGTGGCGTGCAGGACCGCATGAGCGTCATC CACATGGAGTGAGTGGCGTGCAGTACCGCATGAGCGTCATC < 41bp 0.733685707473404 0.331380403665701 0.21045426 0.09146774 prediction 0.467371414946809 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27163005 chr2:27163008 nonsynonymous SNV 0.994 5 24 hm5C_associated_SNPs_72696 0 0 0 0 1 DPYSL5 chr2:27163040 5'GT 27163040 Upstream 33bp
chr22 50928005 50928005 1 + G A rs2232884 50928002 + 50927982 50928022 41 CACTCCTTCTACCCCTGGCACACGGGCCGCGACTACCAGCA CACTCCTTCTACCCCTGGCACACAGGCCGCGACTACCAGCA < 41bp 0.770449508024138 0.536766052632571 0.060310245 0.011817515 prediction 0.467366910783135 Functional Loss - MIOX ENSG00000100253 CDS Human protein_coding chr22:50928002 chr22:50928005 synonymous SNV . 0 24 hm5C_associated_SNPs_72698 0 0 0 0 3 MIOX chr22:50927961 3'AG 50927961 Downstream 45bp
chr22 50928005 50928005 1 + G A rs2232884 50928002 + 50927982 50928022 41 CACTCCTTCTACCCCTGGCACACGGGCCGCGACTACCAGCA CACTCCTTCTACCCCTGGCACACAGGCCGCGACTACCAGCA < 41bp 0.770449508024138 0.536766052632571 0.060310245 0.011817515 prediction 0.467366910783135 Functional Loss - MIOX ENSG00000100253 CDS Human protein_coding chr22:50928002 chr22:50928005 synonymous SNV . 0 24 hm5C_associated_SNPs_72698 0 0 0 0 3 MIOX chr22:50928059 5'GT 50928059 Upstream 55bp
chr22 50928005 50928005 1 + G A rs2232884 50928002 + 50927982 50928022 41 CACTCCTTCTACCCCTGGCACACGGGCCGCGACTACCAGCA CACTCCTTCTACCCCTGGCACACAGGCCGCGACTACCAGCA < 41bp 0.770449508024138 0.536766052632571 0.060310245 0.011817515 prediction 0.467366910783135 Functional Loss - MIOX ENSG00000100253 CDS Human protein_coding chr22:50928002 chr22:50928005 synonymous SNV . 0 24 hm5C_associated_SNPs_72698 0 0 0 0 3 MIOX chr22:50928073 5'GT 50928073 Upstream 69bp
chr15 89173301 89173301 1 + G A COAD 89173298 + 89173278 89173318 41 CTCGTCAGTAGGTGGGCCAGCACGGGCACTCATCAGTAGAA CTCGTCAGTAGGTGGGCCAGCACAGGCACTCATCAGTAGAA < 41bp 0.765191621065515 0.531509236112191 0.6422858 0.7856295 prediction 0.467364769906648 Functional Loss - AEN ENSG00000181026 CDS Human protein_coding chr15:89173298 chr15:89173301 nonsynonymous SNV 0.247 4 24 hm5C_associated_SNPs_72699 0 0 1 0 1 AEN chr15:89173289 3'AG 89173289 Downstream 13bp
chr18 77796710 77796710 1 + G A UCEC 77796707 + 77796687 77796727 41 AGTCCTTCCTTGGGTTCTCACTCGGTGAGTATAAGCCATGA AGTCCTTCCTTGGGTTCTCACTCAGTGAGTATAAGCCATGA < 41bp 0.743299118825903 0.509626894195784 0.1728198 0.14799914 prediction 0.467344449260238 Functional Loss - RBFA ENSG00000101546 CDS Human protein_coding chr18:77796707 chr18:77796710 synonymous SNV . 0 24 hm5C_associated_SNPs_72702 0 0 1 0 2 RBFA chr18:77796668 3'AG 77796668 Downstream 43bp
chr18 77796710 77796710 1 + G A UCEC 77796707 + 77796687 77796727 41 AGTCCTTCCTTGGGTTCTCACTCGGTGAGTATAAGCCATGA AGTCCTTCCTTGGGTTCTCACTCAGTGAGTATAAGCCATGA < 41bp 0.743299118825903 0.509626894195784 0.1728198 0.14799914 prediction 0.467344449260238 Functional Loss - RBFA ENSG00000101546 CDS Human protein_coding chr18:77796707 chr18:77796710 synonymous SNV . 0 24 hm5C_associated_SNPs_72702 0 0 1 0 2 RBFA chr18:77796710 5'GT 77796710 Upstream 1bp
chr5 159656619 159656619 1 + A C BRCA 159656618 + 159656598 159656638 41 GAGAAGAATTATGATGAGTTCATGAAGCTCCTTGGTGAGTG GAGAAGAATTATGATGAGTTCCTGAAGCTCCTTGGTGAGTG < 41bp 0.73366909957418 0.471822338864249 0.04639724 0.018650472 prediction 0.46733819914836 Functional Loss - FABP6 ENSG00000170231 CDS Human protein_coding chr5:159656618 chr5:159656619 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_72703 0 0 0 0 2 FABP6 chr5:159656553 3'AG 159656553 Downstream 67bp
chr5 159656619 159656619 1 + A C BRCA 159656618 + 159656598 159656638 41 GAGAAGAATTATGATGAGTTCATGAAGCTCCTTGGTGAGTG GAGAAGAATTATGATGAGTTCCTGAAGCTCCTTGGTGAGTG < 41bp 0.73366909957418 0.471822338864249 0.04639724 0.018650472 prediction 0.46733819914836 Functional Loss - FABP6 ENSG00000170231 CDS Human protein_coding chr5:159656618 chr5:159656619 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_72703 0 0 0 0 2 FABP6 chr5:159656631 5'GT 159656631 Upstream 13bp
chr14 75936017 75936017 1 + A C UCEC 75936013 + 75935993 75936033 41 GAATCCGAGCGGCTGGAACTCATGAACGCAGAGCTGAAGAC GAATCCGAGCGGCTGGAACTCATGCACGCAGAGCTGAAGAC < 41bp 0.733664455721907 0.322420754314562 0.37213814 0.19034392 prediction 0.467328911443813 Functional Loss - JDP2 ENSG00000140044 CDS Human protein_coding chr14:75936013 chr14:75936017 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_72704 0 0 0 0 1 JDP2 chr14:75935993 3'AG 75935993 Downstream 25bp
chr13 114291015 114291015 1 + G T UCEC 114291013 + 114290993 114291033 41 GGCTCTGGAGCCATACGTGACAGGTCAGCAATGCCCAGACA GGCTCTGGAGCCATACGTGACATGTCAGCAATGCCCAGACA < 41bp 0.733663516969478 0.374848728877583 0.3429736 0.13510033 prediction 0.467327033938955 Functional Loss - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114291013 chr13:114291015 stopgain 0.625 1 23 hm5C_associated_SNPs_72706 0 0 1 0 1 TFDP1 chr13:114291015 5'GT 114291015 Upstream 1bp
chr10 118314932 118314932 1 + G T UCEC 118314929 + 118314909 118314949 41 TGAGCCAAGTCGTGGGCCACCTAGATTTCTTTCCAAATGGA TGAGCCAAGTCGTGGGCCACCTATATTTCTTTCCAAATGGA < 41bp 0.733652062477679 0.346737432595678 0.15393102 0.21508867 prediction 0.467304124955358 Functional Loss - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314929 chr10:118314932 nonsynonymous SNV 0.983 5 24 hm5C_associated_SNPs_72711 0 0 0 0 1 PNLIP chr10:118315019 5'GT 118315019 Upstream 88bp
chr2 220396750 220396750 1 + G C ESCA 220396749 + 220396729 220396769 41 CGTCGTTTGAGGCAGGTATTCGGGTGCAGATCCACAGCCAG CGTCGTTTGAGGCAGGTATTCCGGTGCAGATCCACAGCCAG < 41bp 0.877047301486271 0.643400292623006 0.91869754 0.90032244 prediction 0.467294017726529 Functional Loss - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220396749 chr2:220396750 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_72712 0 0 1 0 1 ASIC4 chr2:220396723 3'AG 220396723 Downstream 28bp
chrX 153524334 153524334 1 + C T BLCA 153524332 + 153524312 153524352 41 CATTCCATCAGGGCCACATGCTCCACGAGCTCCGGGTAAGT CATTCCATCAGGGCCACATGCTTCACGAGCTCCGGGTAAGT < 41bp 0.733646797113541 0.462713437234801 0.93539804 0.2256152 prediction 0.467293594227081 Functional Loss - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153524332 chrX:153524334 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_72713 0 0 0 0 1 TKTL1 chrX:153524346 5'GT 153524346 Upstream 13bp
chr10 131959247 131959247 1 + A C COAD 131959246 + 131959226 131959266 41 TGTTTATGAAAGGAACTCCTCAAGAACCACGCTGTGGTAAG TGTTTATGAAAGGAACTCCTCCAGAACCACGCTGTGGTAAG < 41bp 0.789526110527077 0.555883633142349 0.3264969 0.15299952 prediction 0.467284954769456 Functional Loss - GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131959246 chr10:131959247 nonsynonymous SNV 0.856 1 22 hm5C_associated_SNPs_72715 0 0 1 0 1 GLRX3 chr10:131959261 5'GT 131959261 Upstream 15bp
chr17 73100204 73100204 1 + G C LIHC 73100200 + 73100180 73100220 41 GCAAGGCAAGCAGGCTGTCGCGGCGGATGCCCTGGAGCGGG GCAAGGCAAGCAGGCTGTCGCGGCCGATGCCCTGGAGCGGG < 41bp 0.851934032240281 0.61829363931404 0.92507064 0.89042985 prediction 0.467280785852483 Functional Loss - SLC16A5 ENSG00000170190 CDS Human protein_coding chr17:73100200 chr17:73100204 synonymous SNV . 0 25 hm5C_associated_SNPs_72716 0 0 0 0 1 SLC16A5 chr17:73100275 5'GT 73100275 Upstream 72bp
chr14 74060503 74060503 1 + G A UCEC 74060500 + 74060480 74060520 41 CTTGCTGGCCATGGCTTTGCCACGTTGGCTCTAGCTTATTA CTTGCTGGCCATGGCTTTGCCACATTGGCTCTAGCTTATTA < 41bp 0.733640197477873 0.492528179429405 0.11378661 0.06678802 prediction 0.467280394955746 Functional Loss - ACOT4 ENSG00000177465 CDS Human protein_coding chr14:74060500 chr14:74060503 synonymous SNV . 0 24 hm5C_associated_SNPs_72717 0 0 0 0 1 ACOT4 chr14:74060406 3'AG 74060406 Downstream 98bp
chr11 85622377 85622377 1 + G T CESC 85622375 + 85622355 85622395 41 TAAAAAATGCTATTCATGAACTGGAAGCAGAAAATTTGGTG TAAAAAATGCTATTCATGAACTTGAAGCAGAAAATTTGGTG < 41bp 0.733639626611561 0.408732591563934 0.1360352 0.10875204 prediction 0.467279253223122 Functional Loss - CCDC83 ENSG00000150676 CDS Human protein_coding chr11:85622375 chr11:85622377 synonymous SNV . 0 23 hm5C_associated_SNPs_72718 0 0 0 0 3 CCDC83 chr11:85622319 3'AG 85622319 Downstream 59bp
chr11 85622377 85622377 1 + G T CESC 85622375 + 85622355 85622395 41 TAAAAAATGCTATTCATGAACTGGAAGCAGAAAATTTGGTG TAAAAAATGCTATTCATGAACTTGAAGCAGAAAATTTGGTG < 41bp 0.733639626611561 0.408732591563934 0.1360352 0.10875204 prediction 0.467279253223122 Functional Loss - CCDC83 ENSG00000150676 CDS Human protein_coding chr11:85622375 chr11:85622377 synonymous SNV . 0 23 hm5C_associated_SNPs_72718 0 0 0 0 3 CCDC83 chr11:85622324 3'AG 85622324 Downstream 54bp
chr11 85622377 85622377 1 + G T CESC 85622375 + 85622355 85622395 41 TAAAAAATGCTATTCATGAACTGGAAGCAGAAAATTTGGTG TAAAAAATGCTATTCATGAACTTGAAGCAGAAAATTTGGTG < 41bp 0.733639626611561 0.408732591563934 0.1360352 0.10875204 prediction 0.467279253223122 Functional Loss - CCDC83 ENSG00000150676 CDS Human protein_coding chr11:85622375 chr11:85622377 synonymous SNV . 0 23 hm5C_associated_SNPs_72718 0 0 0 0 3 CCDC83 chr11:85622445 5'GT 85622445 Upstream 69bp
chr6 69665970 69665970 1 + C T UCEC 69665968 + 69665948 69665988 41 AGCCAGTGCTCAGTAACGTGCTCGAATGGGACTCAGCAGAG AGCCAGTGCTCAGTAACGTGCTTGAATGGGACTCAGCAGAG < 41bp 0.780971220642711 0.547331803131428 0.38398877 0.3663747 prediction 0.467278835022566 Functional Loss - ADGRB3 ENSG00000135298 CDS Human protein_coding chr6:69665968 chr6:69665970 nonsynonymous SNV 0.261 2 23 hm5C_associated_SNPs_72719 0 0 1 0 1 ADGRB3 chr6:69665916 3'AG 69665916 Downstream 55bp
chr10 43607593 43607593 1 + G A UCEC 43607590 + 43607570 43607610 41 CCCCTGTCCTGTGCAGTCAGCAAGAGACGGCTGGAGTGTGA CCCCTGTCCTGTGCAGTCAGCAAAAGACGGCTGGAGTGTGA < 41bp 0.750355810664166 0.516721928481027 0.746191 0.50341654 prediction 0.467267764366277 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43607590 chr10:43607593 synonymous SNV . 0 24 hm5C_associated_SNPs_72720 0 0 0 0 2 RET chr10:43607547 3'AG 43607547 Downstream 47bp
chr10 43607593 43607593 1 + G A UCEC 43607590 + 43607570 43607610 41 CCCCTGTCCTGTGCAGTCAGCAAGAGACGGCTGGAGTGTGA CCCCTGTCCTGTGCAGTCAGCAAAAGACGGCTGGAGTGTGA < 41bp 0.750355810664166 0.516721928481027 0.746191 0.50341654 prediction 0.467267764366277 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43607590 chr10:43607593 synonymous SNV . 0 24 hm5C_associated_SNPs_72720 0 0 0 0 2 RET chr10:43607672 5'GT 43607672 Upstream 80bp
chr22 25623839 25623839 1 + G T rs16986560 25623836 + 25623816 25623856 41 GCAGCTGGGTGGGCTATGAACAGGCCAACTGCAAGGGCGAG GCAGCTGGGTGGGCTATGAACAGTCCAACTGCAAGGGCGAG < 41bp 0.733628238725857 0.325036265158913 0.92145324 0.39227235 prediction 0.467256477451713 Functional Loss - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25623836 chr22:25623839 nonsynonymous SNV 0.986 0 24 hm5C_associated_SNPs_72722 1 0 0 0 1 CRYBB2 chr22:25623820 3'AG 25623820 Downstream 20bp
chr3 25833286 25833286 1 + G C LUAD 25833282 + 25833262 25833302 41 GCCCGGGCTCTGAGCACAAACTCAGATCCCAAGTTGGCATG GCCCGGGCTCTGAGCACAAACTCACATCCCAAGTTGGCATG < 41bp 0.844100032558269 0.61047863545883 0.06464031 0.040886253 prediction 0.467242794198878 Functional Loss - OXSM ENSG00000151093 CDS Human protein_coding chr3:25833282 chr3:25833286 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_72726 0 0 1 0 1 OXSM chr3:25833261 3'AG 25833261 Downstream 26bp
chr6 3078169 3078169 1 + G T UCEC 3078166 + 3078146 3078186 41 CTGATGCACGTGCTGAAAGCCGAGGTAGAGAGGGCCCCTCC CTGATGCACGTGCTGAAAGCCGATGTAGAGAGGGCCCCTCC < 41bp 0.872702519507089 0.639081519055676 0.9114709 0.45065767 prediction 0.467242000902826 Functional Loss - RIPK1 ENSG00000137275 CDS Human protein_coding chr6:3078166 chr6:3078169 nonsynonymous SNV 0.230 0 24 hm5C_associated_SNPs_72728 0 0 1 0 1 RIPK1 chr6:3078169 5'GT 3078169 Upstream 1bp
chr4 120079240 120079240 1 + G T COAD 120079237 + 120079217 120079257 41 ACTTGGAAGGTGGTTCGCAGCAAGCCCCCTTGACTCCTCCC ACTTGGAAGGTGGTTCGCAGCAATCCCCCTTGACTCCTCCC < 41bp 0.733612936001866 0.338049839147685 0.07723686 0.04325658 prediction 0.467225872003732 Functional Loss - MYOZ2 ENSG00000172399 CDS Human protein_coding chr4:120079237 chr4:120079240 nonsynonymous SNV 0.988 0 24 hm5C_associated_SNPs_72730 0 0 0 0 2 MYOZ2 chr4:120079177 3'AG 120079177 Downstream 64bp
chr4 120079240 120079240 1 + G T COAD 120079237 + 120079217 120079257 41 ACTTGGAAGGTGGTTCGCAGCAAGCCCCCTTGACTCCTCCC ACTTGGAAGGTGGTTCGCAGCAATCCCCCTTGACTCCTCCC < 41bp 0.733612936001866 0.338049839147685 0.07723686 0.04325658 prediction 0.467225872003732 Functional Loss - MYOZ2 ENSG00000172399 CDS Human protein_coding chr4:120079237 chr4:120079240 nonsynonymous SNV 0.988 0 24 hm5C_associated_SNPs_72730 0 0 0 0 2 MYOZ2 chr4:120079306 5'GT 120079306 Upstream 67bp
chrX 37660601 37660601 1 + G T SARC 37660598 + 37660578 37660618 41 CAACAGAAGGTGGTCATCACCAAGGTACTGATTGGTTTAGT CAACAGAAGGTGGTCATCACCAATGTACTGATTGGTTTAGT < 41bp 0.733610970615047 0.34001792512662 0.8874122 0.13302907 prediction 0.467221941230094 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37660598 chrX:37660601 nonsynonymous SNV 0.989 5 24 hm5C_associated_SNPs_72731 0 0 0 1 2 CYBB chrX:37660509 3'AG 37660509 Downstream 93bp
chrX 37660601 37660601 1 + G T SARC 37660598 + 37660578 37660618 41 CAACAGAAGGTGGTCATCACCAAGGTACTGATTGGTTTAGT CAACAGAAGGTGGTCATCACCAATGTACTGATTGGTTTAGT < 41bp 0.733610970615047 0.34001792512662 0.8874122 0.13302907 prediction 0.467221941230094 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37660598 chrX:37660601 nonsynonymous SNV 0.989 5 24 hm5C_associated_SNPs_72731 0 0 0 1 2 CYBB chrX:37660601 5'GT 37660601 Upstream 1bp
chr16 57180055 57180055 1 + G A UCEC 57180052 + 57180032 57180072 41 CATCAGTGACATGGAGGAGACACGGCATGCCGTGGTGCAGG CATCAGTGACATGGAGGAGACACAGCATGCCGTGGTGCAGG < 41bp 0.733609792751719 0.494751913225701 0.20699531 0.13543767 prediction 0.467219585503438 Functional Loss - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57180052 chr16:57180055 nonsynonymous SNV 0.958 4 24 hm5C_associated_SNPs_72732 0 0 1 0 1 CPNE2 chr16:57179997 3'AG 57179997 Downstream 59bp
chr3 46620766 46620766 1 + G T SARC 46620763 + 46620743 46620783 41 CTCGTCCATCTCGGGGATACCTGGCCTTCAGAGATGACAGC CTCGTCCATCTCGGGGATACCTGTCCTTCAGAGATGACAGC < 41bp 0.733598718024479 0.335692417026029 0.7155198 0.2722238 prediction 0.467197436048959 Functional Loss - TDGF1 ENSG00000241186 CDS Human protein_coding chr3:46620763 chr3:46620766 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_72738 0 0 0 0 2 TDGF1 chr3:46620722 3'AG 46620722 Downstream 45bp
chr3 46620766 46620766 1 + G T SARC 46620763 + 46620743 46620783 41 CTCGTCCATCTCGGGGATACCTGGCCTTCAGAGATGACAGC CTCGTCCATCTCGGGGATACCTGTCCTTCAGAGATGACAGC < 41bp 0.733598718024479 0.335692417026029 0.7155198 0.2722238 prediction 0.467197436048959 Functional Loss - TDGF1 ENSG00000241186 CDS Human protein_coding chr3:46620763 chr3:46620766 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_72738 0 0 0 0 2 TDGF1 chr3:46620856 5'GT 46620856 Upstream 91bp
chrX 134988269 134988269 1 + G T STAD 134988267 + 134988247 134988287 41 CGTCTTGTCAACTGGTCCCACAGGGCTTATTAATATGGCAG CGTCTTGTCAACTGGTCCCACATGGCTTATTAATATGGCAG < 41bp 0.733596172182773 0.378990241415844 0.23620105 0.035443246 prediction 0.467192344365545 Functional Loss - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134988267 chrX:134988269 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_72739 0 0 1 0 2 SAGE1 chrX:134988183 3'AG 134988183 Downstream 87bp
chrX 134988269 134988269 1 + G T STAD 134988267 + 134988247 134988287 41 CGTCTTGTCAACTGGTCCCACAGGGCTTATTAATATGGCAG CGTCTTGTCAACTGGTCCCACATGGCTTATTAATATGGCAG < 41bp 0.733596172182773 0.378990241415844 0.23620105 0.035443246 prediction 0.467192344365545 Functional Loss - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134988267 chrX:134988269 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_72739 0 0 1 0 2 SAGE1 chrX:134988323 5'GT 134988323 Upstream 55bp
chr6 139170512 139170512 1 + A C UCEC 139170508 + 139170488 139170528 41 TAGAAAAAGCTCTGGATGGGCAGAAGGCACAGAGCATCGGA TAGAAAAAGCTCTGGATGGGCAGACGGCACAGAGCATCGGA < 41bp 0.733591181239773 0.325896693857503 0.38679487 0.35702974 prediction 0.467182362479546 Functional Loss - ECT2L ENSG00000203734 CDS Human protein_coding chr6:139170508 chr6:139170512 nonsynonymous SNV 0.924 0 25 hm5C_associated_SNPs_72744 0 0 0 0 1 ECT2L chr6:139170571 5'GT 139170571 Upstream 60bp
chr7 143013439 143013439 1 + G T COAD 143013437 + 143013417 143013457 41 GAGAATGGGGGCCTCCAGCACAGGCTCCGGAAGGATGCAGG GAGAATGGGGGCCTCCAGCACATGCTCCGGAAGGATGCAGG < 41bp 0.733579351062516 0.375210034650394 0.89641947 0.24749255 prediction 0.467158702125031 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143013437 chr7:143013439 nonsynonymous SNV 0.779 3 23 hm5C_associated_SNPs_72749 0 0 0 0 1 CLCN1 chr7:143013485 5'GT 143013485 Upstream 47bp
chr2 233246000 233246000 1 + C T STAD 233245998 + 233245978 233246018 41 GCCCGGGACAGGAAGGCCTACACGGTCCTCCTATACGGAAA GCCCGGGACAGGAAGGCCTACATGGTCCTCCTATACGGAAA < 41bp 0.801082980153451 0.567505826356874 0.13231 0.13823557 prediction 0.467154307593154 Functional Loss - ALPP ENSG00000163283 CDS Human protein_coding chr2:233245998 chr2:233246000 nonsynonymous SNV 0.003 5 23 hm5C_associated_SNPs_72750 0 0 0 0 2 ALPP chr2:233245961 3'AG 233245961 Downstream 40bp
chr2 233246000 233246000 1 + C T STAD 233245998 + 233245978 233246018 41 GCCCGGGACAGGAAGGCCTACACGGTCCTCCTATACGGAAA GCCCGGGACAGGAAGGCCTACATGGTCCTCCTATACGGAAA < 41bp 0.801082980153451 0.567505826356874 0.13231 0.13823557 prediction 0.467154307593154 Functional Loss - ALPP ENSG00000163283 CDS Human protein_coding chr2:233245998 chr2:233246000 nonsynonymous SNV 0.003 5 23 hm5C_associated_SNPs_72750 0 0 0 0 2 ALPP chr2:233246077 5'GT 233246077 Upstream 78bp
chr5 80256799 80256799 1 + G T UCEC 80256797 + 80256777 80256817 41 GAACGAACGCCCGCGCCACCCAGGGCCGGCGCCGGGCAGGG GAACGAACGCCCGCGCCACCCATGGCCGGCGCCGGGCAGGG < 41bp 0.900227106148981 0.666656005860033 0.8976985 0.38374457 prediction 0.467142200577897 Functional Loss - RASGRF2 ENSG00000113319 CDS Human protein_coding chr5:80256797 chr5:80256799 nonsynonymous SNV 0.832 0 23 hm5C_associated_SNPs_72751 0 0 1 0 1 RASGRF2 chr5:80256845 5'GT 80256845 Upstream 47bp
chr19 39691058 39691058 1 + G A STAD 39691055 + 39691035 39691075 41 CTGCTGGCGGCCGACCGCCGCACGGTCATTGCTCAGCACCA CTGCTGGCGGCCGACCGCCGCACAGTCATTGCTCAGCACCA < 41bp 0.781143092572174 0.547577109934498 0.44679755 0.05537966 prediction 0.467131965275353 Functional Loss - NCCRP1 ENSG00000188505 CDS Human protein_coding chr19:39691055 chr19:39691058 synonymous SNV . 0 24 hm5C_associated_SNPs_72752 0 0 1 0 2 NCCRP1 chr19:39690986 3'AG 39690986 Downstream 73bp
chr19 39691058 39691058 1 + G A STAD 39691055 + 39691035 39691075 41 CTGCTGGCGGCCGACCGCCGCACGGTCATTGCTCAGCACCA CTGCTGGCGGCCGACCGCCGCACAGTCATTGCTCAGCACCA < 41bp 0.781143092572174 0.547577109934498 0.44679755 0.05537966 prediction 0.467131965275353 Functional Loss - NCCRP1 ENSG00000188505 CDS Human protein_coding chr19:39691055 chr19:39691058 synonymous SNV . 0 24 hm5C_associated_SNPs_72752 0 0 1 0 2 NCCRP1 chr19:39691124 5'GT 39691124 Upstream 67bp
chr19 18702978 18702978 1 + A T STAD 18702974 + 18702954 18702994 41 CCAGGACCTTAGGTTTGATGCGGAATCTGCCGAGTGATGGC CCAGGACCTTAGGTTTGATGCGGATTCTGCCGAGTGATGGC < 41bp 0.830161055774162 0.596600044209958 0.90334785 0.8009087 prediction 0.467122023128408 Functional Loss - C19orf60 ENSG00000006015 CDS Human protein_coding chr19:18702974 chr19:18702978 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_72755 0 0 1 0 1 C19orf60 chr19:18702918 3'AG 18702918 Downstream 61bp
chr10 5951204 5951204 1 + G A BLCA 5951201 + 5951181 5951221 41 TGAGGGACCACCCCCTCCTCCCCGAGGCTGAGGCGTGTGTG TGAGGGACCACCCCCTCCTCCCCAAGGCTGAGGCGTGTGTG < 41bp 0.733554550073805 0.476544555926382 0.3899814 0.20554778 prediction 0.467109100147609 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5951201 chr10:5951204 nonsynonymous SNV 0.052 0 24 hm5C_associated_SNPs_72758 0 0 1 0 2 FBXO18 chr10:5951122 3'AG 5951122 Downstream 83bp
chr10 5951204 5951204 1 + G A BLCA 5951201 + 5951181 5951221 41 TGAGGGACCACCCCCTCCTCCCCGAGGCTGAGGCGTGTGTG TGAGGGACCACCCCCTCCTCCCCAAGGCTGAGGCGTGTGTG < 41bp 0.733554550073805 0.476544555926382 0.3899814 0.20554778 prediction 0.467109100147609 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5951201 chr10:5951204 nonsynonymous SNV 0.052 0 24 hm5C_associated_SNPs_72758 0 0 1 0 2 FBXO18 chr10:5951257 5'GT 5951257 Upstream 54bp
chr10 5951203 5951203 1 + C T UCEC 5951201 + 5951181 5951221 41 TGAGGGACCACCCCCTCCTCCCCGAGGCTGAGGCGTGTGTG TGAGGGACCACCCCCTCCTCCCTGAGGCTGAGGCGTGTGTG < 41bp 0.733554550073805 0.458399264766609 0.3899814 0.24204773 prediction 0.467109100147609 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5951201 chr10:5951203 synonymous SNV . 0 23 hm5C_associated_SNPs_72759 0 0 1 0 2 FBXO18 chr10:5951122 3'AG 5951122 Downstream 82bp
chr10 5951203 5951203 1 + C T UCEC 5951201 + 5951181 5951221 41 TGAGGGACCACCCCCTCCTCCCCGAGGCTGAGGCGTGTGTG TGAGGGACCACCCCCTCCTCCCTGAGGCTGAGGCGTGTGTG < 41bp 0.733554550073805 0.458399264766609 0.3899814 0.24204773 prediction 0.467109100147609 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5951201 chr10:5951203 synonymous SNV . 0 23 hm5C_associated_SNPs_72759 0 0 1 0 2 FBXO18 chr10:5951257 5'GT 5951257 Upstream 55bp
chr5 94024243 94024243 1 + T C UCEC 94024242 + 94024222 94024262 41 TTTACCAGCCTTGGGGAAAACTGGTGTGCTTGGGTCTGGAA TTTACCAGCCTTGGGGAAAACCGGTGTGCTTGGGTCTGGAA < 41bp 0.754737309736579 0.521183050047093 0.79725426 0.8284121 prediction 0.467108519378972 Functional Loss - SLF1 ENSG00000133302 CDS Human protein_coding chr5:94024242 chr5:94024243 synonymous SNV . 0 22 hm5C_associated_SNPs_72760 0 0 1 0 1 SLF1 chr5:94024211 3'AG 94024211 Downstream 33bp
chr19 2991940 2991940 1 + G A SKCM 2991937 + 2991917 2991957 41 GCCTGTCTGCGGTGCTGGGACCAGAGGACCATCATGAAACC GCCTGTCTGCGGTGCTGGGACCAAAGGACCATCATGAAACC < 41bp 0.769835075637473 0.536281057707991 0.35752714 0.04930389 prediction 0.467108035858963 Functional Loss - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2991937 chr19:2991940 synonymous SNV . 0 24 hm5C_associated_SNPs_72761 0 0 0 0 2 TLE6 chr19:2991841 3'AG 2991841 Downstream 100bp
chr19 2991940 2991940 1 + G A SKCM 2991937 + 2991917 2991957 41 GCCTGTCTGCGGTGCTGGGACCAGAGGACCATCATGAAACC GCCTGTCTGCGGTGCTGGGACCAAAGGACCATCATGAAACC < 41bp 0.769835075637473 0.536281057707991 0.35752714 0.04930389 prediction 0.467108035858963 Functional Loss - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2991937 chr19:2991940 synonymous SNV . 0 24 hm5C_associated_SNPs_72761 0 0 0 0 2 TLE6 chr19:2991982 5'GT 2991982 Upstream 43bp
chr11 111754535 111754535 1 + T C KIRC 111754534 + 111754514 111754554 41 CTGGTTCCCAGGACATCAACCTGAACTGGATCCTCCCCGAT CTGGTTCCCAGGACATCAACCCGAACTGGATCCTCCCCGAT < 41bp 0.733551762483973 0.48275391777203 0.13917688 0.19870684 prediction 0.467103524967946 Functional Loss - C11orf1 ENSG00000137720 CDS Human protein_coding chr11:111754534 chr11:111754535 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_72763 0 0 1 0 1 C11orf1 chr11:111754495 3'AG 111754495 Downstream 41bp
chr6 36993687 36993687 1 + G A LIHC 36993684 + 36993664 36993704 41 GGAAATGTGCTGCCTGAGGCCAAGGAGGACAAGAGGCGGGG GGAAATGTGCTGCCTGAGGCCAAAGAGGACAAGAGGCGGGG < 41bp 0.775876378312317 0.542327863871693 0.5481534 0.45882636 prediction 0.467097028881248 Functional Loss - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36993684 chr6:36993687 synonymous SNV . 0 24 hm5C_associated_SNPs_72764 0 0 0 0 1 FGD2 chr6:36993714 5'GT 36993714 Upstream 28bp
chr6 148854931 148854931 1 + A C OV 148854930 + 148854910 148854950 41 GGAGATATCATCGATATAATCAGCAAGCCACCCATGGGGAC GGAGATATCATCGATATAATCCGCAAGCCACCCATGGGGAC < 41bp 0.799268666079897 0.565721760979822 0.6456631 0.1288448 prediction 0.46709381020015 Functional Loss - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148854930 chr6:148854931 nonsynonymous SNV 0.975 4 22 hm5C_associated_SNPs_72765 0 0 1 0 1 SASH1 chr6:148854907 3'AG 148854907 Downstream 25bp
chr14 20822321 20822321 1 + G T STAD 20822319 + 20822299 20822339 41 CACAGCTAGATCTTCGGGTACAGGAGTTAATAAAGTTGATC CACAGCTAGATCTTCGGGTACATGAGTTAATAAAGTTGATC < 41bp 0.733544910118888 0.391425195945078 0.8723264 0.22950524 prediction 0.467089820237776 Functional Loss - PARP2 ENSG00000129484 CDS Human protein_coding chr14:20822319 chr14:20822321 nonsynonymous SNV 0.839 3 23 hm5C_associated_SNPs_72766 0 0 1 0 1 PARP2 chr14:20822406 5'GT 20822406 Upstream 86bp
chr12 54917225 54917225 1 + G T GBM 54917222 + 54917202 54917242 41 ACAATCAGCAAAGCCAAGAACAAGAAAACCAGGAAGCAGAG ACAATCAGCAAAGCCAAGAACAATAAAACCAGGAAGCAGAG < 41bp 0.733543263331655 0.341831700618478 0.91323054 0.90848696 prediction 0.467086526663311 Functional Loss - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54917222 chr12:54917225 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_72767 0 0 1 0 2 NCKAP1L chr12:54917178 3'AG 54917178 Downstream 48bp
chr12 54917225 54917225 1 + G T GBM 54917222 + 54917202 54917242 41 ACAATCAGCAAAGCCAAGAACAAGAAAACCAGGAAGCAGAG ACAATCAGCAAAGCCAAGAACAATAAAACCAGGAAGCAGAG < 41bp 0.733543263331655 0.341831700618478 0.91323054 0.90848696 prediction 0.467086526663311 Functional Loss - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54917222 chr12:54917225 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_72767 0 0 1 0 2 NCKAP1L chr12:54917323 5'GT 54917323 Upstream 99bp
chr1 16359717 16359717 1 + G A rs140290085 16359714 + 16359694 16359734 41 TCAGTCCCTCTTCGTGACATCGCGGGGCAGAGCTGTGGGCT TCAGTCCCTCTTCGTGACATCGCAGGGCAGAGCTGTGGGCT < 41bp 0.777957567035552 0.544420485487758 0.9004105 0.3432948 prediction 0.467074163095588 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16359714 chr1:16359717 nonsynonymous SNV 0.121 1 24 hm5C_associated_SNPs_72770 0 0 0 0 2 CLCNKA chr1:16359665 3'AG 16359665 Downstream 53bp
chr1 16359717 16359717 1 + G A rs140290085 16359714 + 16359694 16359734 41 TCAGTCCCTCTTCGTGACATCGCGGGGCAGAGCTGTGGGCT TCAGTCCCTCTTCGTGACATCGCAGGGCAGAGCTGTGGGCT < 41bp 0.777957567035552 0.544420485487758 0.9004105 0.3432948 prediction 0.467074163095588 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16359714 chr1:16359717 nonsynonymous SNV 0.121 1 24 hm5C_associated_SNPs_72770 0 0 0 0 2 CLCNKA chr1:16359751 5'GT 16359751 Upstream 35bp
chr6 46806811 46806811 1 + G T LUAD 46806809 + 46806789 46806829 41 GGGCATGGTGATCGGAGGCACGGCTGGCGTGATCTTCTTGA GGGCATGGTGATCGGAGGCACGTCTGGCGTGATCTTCTTGA < 41bp 0.733537008986009 0.390507683278331 0.6289757 0.29807514 prediction 0.467074017972018 Functional Loss - MEP1A ENSG00000112818 CDS Human protein_coding chr6:46806809 chr6:46806811 nonsynonymous SNV 0.008 2 23 hm5C_associated_SNPs_72771 0 0 0 0 1 MEP1A chr6:46806717 3'AG 46806717 Downstream 95bp
chr5 131398247 131398247 1 + C T COAD 131398245 + 131398225 131398265 41 CTGCCATGTCTGCCCCTGGCCACGGCCGCACCCACGGTAAG CTGCCATGTCTGCCCCTGGCCATGGCCGCACCCACGGTAAG < 41bp 0.785480101567192 0.551951093857489 0.17636934 0.20396909 prediction 0.467058015419406 Functional Loss - IL3 ENSG00000164399 CDS Human protein_coding chr5:131398245 chr5:131398247 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_72772 0 0 0 0 2 IL3 chr5:131398219 3'AG 131398219 Downstream 29bp
chr5 131398247 131398247 1 + C T COAD 131398245 + 131398225 131398265 41 CTGCCATGTCTGCCCCTGGCCACGGCCGCACCCACGGTAAG CTGCCATGTCTGCCCCTGGCCATGGCCGCACCCACGGTAAG < 41bp 0.785480101567192 0.551951093857489 0.17636934 0.20396909 prediction 0.467058015419406 Functional Loss - IL3 ENSG00000164399 CDS Human protein_coding chr5:131398245 chr5:131398247 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_72772 0 0 0 0 2 IL3 chr5:131398260 5'GT 131398260 Upstream 14bp
chr16 2079717 2079717 1 + C T rs200227663 2079715 + 2079695 2079735 41 AGCGAGGGCTCCCACCCGCCCACGACCCCTGGGAGCCGAAG AGCGAGGGCTCCCACCCGCCCATGACCCCTGGGAGCCGAAG < 41bp 0.798671658976654 0.565145891891182 0.008326322 0.019732118 prediction 0.467051534170944 Functional Loss - SLC9A3R2 ENSG00000065054 CDS Human protein_coding chr16:2079715 chr16:2079717 synonymous SNV . 0 23 hm5C_associated_SNPs_72773 0 0 1 0 1 SLC9A3R2 chr16:2079783 5'GT 2079783 Upstream 67bp
chr7 116166689 116166689 1 + G A HNSC 116166686 + 116166666 116166706 41 CAAGTGTACGACGCGCACACCAAGGAGATCGACCTGGTCAA CAAGTGTACGACGCGCACACCAAAGAGATCGACCTGGTCAA < 41bp 0.733524475669004 0.49109415409658 0.520116 0.35742128 prediction 0.467048951338008 Functional Loss - CAV1 ENSG00000105974 CDS Human protein_coding chr7:116166686 chr7:116166689 synonymous SNV . 0 24 hm5C_associated_SNPs_72774 0 0 1 1 1 CAV1 chr7:116166743 5'GT 116166743 Upstream 55bp
chrX 37664367 37664367 1 + C T BLCA 37664365 + 37664345 37664385 41 TCACACCCTTCGCATCCATTCTCAAGTCAGTCTGGTACAAA TCACACCCTTCGCATCCATTCTTAAGTCAGTCTGGTACAAA < 41bp 0.733516573351695 0.439578058974325 0.022233397 0.035963804 prediction 0.467033146703391 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37664365 chrX:37664367 synonymous SNV . 0 23 hm5C_associated_SNPs_72778 0 0 0 0 1 CYBB chrX:37664421 5'GT 37664421 Upstream 55bp
chr16 71408712 71408712 1 + C T CESC 71408710 + 71408690 71408730 41 ATGCAGAAGTATGATAAAAACTCAGATGGGAAAATCGAGAT ATGCAGAAGTATGATAAAAACTTAGATGGGAAAATCGAGAT < 41bp 0.733505796253053 0.449799336051275 0.16338325 0.15154094 prediction 0.467011592506106 Functional Loss - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71408710 chr16:71408712 nonsynonymous SNV 0.802 0 23 hm5C_associated_SNPs_72786 0 0 0 0 2 CALB2 chr16:71408648 3'AG 71408648 Downstream 65bp
chr16 71408712 71408712 1 + C T CESC 71408710 + 71408690 71408730 41 ATGCAGAAGTATGATAAAAACTCAGATGGGAAAATCGAGAT ATGCAGAAGTATGATAAAAACTTAGATGGGAAAATCGAGAT < 41bp 0.733505796253053 0.449799336051275 0.16338325 0.15154094 prediction 0.467011592506106 Functional Loss - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71408710 chr16:71408712 nonsynonymous SNV 0.802 0 23 hm5C_associated_SNPs_72786 0 0 0 0 2 CALB2 chr16:71408737 5'GT 71408737 Upstream 26bp
chr8 58907325 58907325 1 + G T rs546985966 58907322 + 58907302 58907342 41 CAGTCCCCCGGAGCCTGGCTCCCGGCTCGGGCCGCACCGCC CAGTCCCCCGGAGCCTGGCTCCCTGCTCGGGCCGCACCGCC < 41bp 0.733502754846226 0.363475958404808 0.9002516 0.2602738 prediction 0.467005509692453 Functional Loss - FAM110B ENSG00000169122 UTR5 Human protein_coding chr8:58907322 chr8:58907325 . . 0 24 hm5C_associated_SNPs_72789 0 0 0 0 1 FAM110B chr8:58907365 5'GT 58907365 Upstream 41bp
chr9 96278475 96278475 1 + G A UCEC 96278472 + 96278452 96278492 41 CCCAGAGCGGCAGCCCCAACCACGTGGATTCCGCCTACTTC CCCAGAGCGGCAGCCCCAACCACATGGATTCCGCCTACTTC < 41bp 0.761013788021551 0.527513661915394 0.5596257 0.23231891 prediction 0.467000252212314 Functional Loss - FAM120A ENSG00000048828 CDS Human protein_coding chr9:96278472 chr9:96278475 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_72790 0 0 0 0 1 FAM120A chr9:96278551 5'GT 96278551 Upstream 77bp
chr6 152332878 152332878 1 + C T UVM 152332876 + 152332856 152332896 41 ATGATTGGTCTCGTCTGGCGCTCCATGGAGCACCCAGGGAA ATGATTGGTCTCGTCTGGCGCTTCATGGAGCACCCAGGGAA < 41bp 0.733499546828425 0.476461185813001 0.8387499 0.32770815 prediction 0.466999093656851 Functional Loss - ESR1 ENSG00000091831 CDS Human protein_coding chr6:152332876 chr6:152332878 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_72791 0 0 0 0 2 ESR1 chr6:152332791 3'AG 152332791 Downstream 88bp
chr6 152332878 152332878 1 + C T UVM 152332876 + 152332856 152332896 41 ATGATTGGTCTCGTCTGGCGCTCCATGGAGCACCCAGGGAA ATGATTGGTCTCGTCTGGCGCTTCATGGAGCACCCAGGGAA < 41bp 0.733499546828425 0.476461185813001 0.8387499 0.32770815 prediction 0.466999093656851 Functional Loss - ESR1 ENSG00000091831 CDS Human protein_coding chr6:152332876 chr6:152332878 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_72791 0 0 0 0 2 ESR1 chr6:152332929 5'GT 152332929 Upstream 52bp
chr5 901546 901546 1 + G A UCEC 901543 + 901523 901563 41 GGAACCGGGTGGTGCTGCTCCACGGTAAATTATGCAGGCTT GGAACCGGGTGGTGCTGCTCCACAGTAAATTATGCAGGCTT < 41bp 0.756504381965301 0.523007044899505 0.68804455 0.24171999 prediction 0.466994674131592 Functional Loss - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:901543 chr5:901546 nonsynonymous SNV 0.174 5 24 hm5C_associated_SNPs_72794 0 0 1 0 2 TRIP13 chr5:901456 3'AG 901456 Downstream 91bp
chr5 901546 901546 1 + G A UCEC 901543 + 901523 901563 41 GGAACCGGGTGGTGCTGCTCCACGGTAAATTATGCAGGCTT GGAACCGGGTGGTGCTGCTCCACAGTAAATTATGCAGGCTT < 41bp 0.756504381965301 0.523007044899505 0.68804455 0.24171999 prediction 0.466994674131592 Functional Loss - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:901543 chr5:901546 nonsynonymous SNV 0.174 5 24 hm5C_associated_SNPs_72794 0 0 1 0 2 TRIP13 chr5:901546 5'GT 901546 Upstream 1bp
chr9 100116990 100116990 1 + G A LUSC 100116987 + 100116967 100117007 41 AGAAGTTGGAGAATGAGTACCTGGACCAGGTAGGGCCCCCA AGAAGTTGGAGAATGAGTACCTGAACCAGGTAGGGCCCCCA < 41bp 0.740267370112368 0.506774343674166 0.19416001 0.11529702 prediction 0.466986052876404 Functional Loss - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100116987 chr9:100116990 nonsynonymous SNV 0.966 4 24 hm5C_associated_SNPs_72795 0 0 0 0 1 CCDC180 chr9:100116995 5'GT 100116995 Upstream 6bp
chr7 127727067 127727067 1 + G A UCEC 127727064 + 127727044 127727084 41 CGGGTGCTGCCAGCTCAAGCCACGGAGTATGCCTTCGCCTT CGGGTGCTGCCAGCTCAAGCCACAGAGTATGCCTTCGCCTT < 41bp 0.735726465353732 0.502240586919379 0.87619865 0.50182074 prediction 0.466971756868707 Functional Loss - SND1 ENSG00000197157 CDS Human protein_coding chr7:127727064 chr7:127727067 synonymous SNV . 0 24 hm5C_associated_SNPs_72802 0 0 1 0 2 SND1 chr7:127726990 3'AG 127726990 Downstream 78bp
chr7 127727067 127727067 1 + G A UCEC 127727064 + 127727044 127727084 41 CGGGTGCTGCCAGCTCAAGCCACGGAGTATGCCTTCGCCTT CGGGTGCTGCCAGCTCAAGCCACAGAGTATGCCTTCGCCTT < 41bp 0.735726465353732 0.502240586919379 0.87619865 0.50182074 prediction 0.466971756868707 Functional Loss - SND1 ENSG00000197157 CDS Human protein_coding chr7:127727064 chr7:127727067 synonymous SNV . 0 24 hm5C_associated_SNPs_72802 0 0 1 0 2 SND1 chr7:127727103 5'GT 127727103 Upstream 37bp
chr2 132290621 132290621 1 + C T rs71428594 132290619 + 132290599 132290639 41 ACGCATTTCCCCAAGGTCTCCACCAAGAGCCTCTCCAAGAA ACGCATTTCCCCAAGGTCTCCATCAAGAGCCTCTCCAAGAA < 41bp 0.733477525123281 0.449031046864134 0.03075391 0.056564063 prediction 0.466955050246561 Functional Loss - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132290619 chr2:132290621 nonsynonymous SNV 0.105 0 23 hm5C_associated_SNPs_72805 0 0 0 0 2 CCDC74A chr2:132290586 3'AG 132290586 Downstream 36bp
chr2 132290621 132290621 1 + C T rs71428594 132290619 + 132290599 132290639 41 ACGCATTTCCCCAAGGTCTCCACCAAGAGCCTCTCCAAGAA ACGCATTTCCCCAAGGTCTCCATCAAGAGCCTCTCCAAGAA < 41bp 0.733477525123281 0.449031046864134 0.03075391 0.056564063 prediction 0.466955050246561 Functional Loss - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132290619 chr2:132290621 nonsynonymous SNV 0.105 0 23 hm5C_associated_SNPs_72805 0 0 0 0 2 CCDC74A chr2:132290642 5'GT 132290642 Upstream 22bp
chr4 3475224 3475224 1 + G A UCEC 3475221 + 3475201 3475241 41 CTGACGCTAGAGGACATCTGCGGGCTGGAGCCCGGCCTGCC CTGACGCTAGAGGACATCTGCGGACTGGAGCCCGGCCTGCC < 41bp 0.781675155455829 0.548200465019394 0.920679 0.85711205 prediction 0.466949380872871 Functional Loss - DOK7 ENSG00000175920 CDS Human protein_coding chr4:3475221 chr4:3475224 synonymous SNV . 0 24 hm5C_associated_SNPs_72808 0 0 0 0 1 DOK7 chr4:3475133 3'AG 3475133 Downstream 92bp
chr7 157177592 157177592 1 + G A CESC 157177589 + 157177569 157177609 41 TCATTTGGGTCACTAGGTCACGGGGGCCTCACTTCATTCTC TCATTTGGGTCACTAGGTCACGGAGGCCTCACTTCATTCTC < 41bp 0.733473370390022 0.493480976051644 0.9052003 0.8699067 prediction 0.466946740780044 Functional Loss - DNAJB6 ENSG00000105993 CDS Human protein_coding chr7:157177589 chr7:157177592 synonymous SNV . 0 24 hm5C_associated_SNPs_72810 1 0 1 0 1 DNAJB6 chr7:157177561 3'AG 157177561 Downstream 32bp
chr20 1099450 1099450 1 + G T STAD 1099448 + 1099428 1099468 41 GGAGGTACTGTTCGCATCGGCAGCGCCGGCCATCACCTGCA GGAGGTACTGTTCGCATCGGCATCGCCGGCCATCACCTGCA < 41bp 0.733470782155754 0.374344373510808 0.3048255 0.1343408 prediction 0.466941564311509 Functional Loss - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1099448 chr20:1099450 nonsynonymous SNV 0.449 0 23 hm5C_associated_SNPs_72812 0 0 1 0 2 PSMF1 chr20:1099396 3'AG 1099396 Downstream 55bp
chr20 1099450 1099450 1 + G T STAD 1099448 + 1099428 1099468 41 GGAGGTACTGTTCGCATCGGCAGCGCCGGCCATCACCTGCA GGAGGTACTGTTCGCATCGGCATCGCCGGCCATCACCTGCA < 41bp 0.733470782155754 0.374344373510808 0.3048255 0.1343408 prediction 0.466941564311509 Functional Loss - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1099448 chr20:1099450 nonsynonymous SNV 0.449 0 23 hm5C_associated_SNPs_72812 0 0 1 0 2 PSMF1 chr20:1099545 5'GT 1099545 Upstream 96bp
chr14 73406578 73406578 1 + C T SKCM 73406576 + 73406556 73406596 41 GATGACGAGTCTCCGTCAACCTCGTCTGGCACAGCTGGGAC GATGACGAGTCTCCGTCAACCTTGTCTGGCACAGCTGGGAC < 41bp 0.824192828635934 0.590722104153578 0.17997807 0.14840302 prediction 0.466941448964711 Functional Loss - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73406576 chr14:73406578 nonsynonymous SNV 0.041 3 23 hm5C_associated_SNPs_72813 0 0 0 0 2 DCAF4 chr14:73406510 3'AG 73406510 Downstream 69bp
chr14 73406578 73406578 1 + C T SKCM 73406576 + 73406556 73406596 41 GATGACGAGTCTCCGTCAACCTCGTCTGGCACAGCTGGGAC GATGACGAGTCTCCGTCAACCTTGTCTGGCACAGCTGGGAC < 41bp 0.824192828635934 0.590722104153578 0.17997807 0.14840302 prediction 0.466941448964711 Functional Loss - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73406576 chr14:73406578 nonsynonymous SNV 0.041 3 23 hm5C_associated_SNPs_72813 0 0 0 0 2 DCAF4 chr14:73406610 5'GT 73406610 Upstream 33bp
chr20 1896101 1896101 1 + G A ESCA 1896098 + 1896078 1896118 41 CAGGCACTGAGCTGTCTGTGCGCGGTGAGTACAGCGTGGGC CAGGCACTGAGCTGTCTGTGCGCAGTGAGTACAGCGTGGGC < 41bp 0.733467669227166 0.478341668186858 0.4028661 0.1717745 prediction 0.466935338454331 Functional Loss - SIRPA ENSG00000198053 CDS Human protein_coding chr20:1896098 chr20:1896101 nonsynonymous SNV 0.188 4 24 hm5C_associated_SNPs_72814 0 0 0 0 1 SIRPA chr20:1896101 5'GT 1896101 Upstream 1bp
chr16 84486808 84486808 1 + G A SKCM 84486805 + 84486785 84486825 41 TCCGGGGAGGAGGTGGACAGCGTGGAGAAGGGCGAGCTGGC TCCGGGGAGGAGGTGGACAGCGTAGAGAAGGGCGAGCTGGC < 41bp 0.770655466484578 0.537188263051721 0.6702845 0.37764204 prediction 0.466934406865715 Functional Loss - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84486805 chr16:84486808 synonymous SNV . 0 24 hm5C_associated_SNPs_72815 0 0 0 0 2 ATP2C2 chr16:84486744 3'AG 84486744 Downstream 65bp
chr16 84486808 84486808 1 + G A SKCM 84486805 + 84486785 84486825 41 TCCGGGGAGGAGGTGGACAGCGTGGAGAAGGGCGAGCTGGC TCCGGGGAGGAGGTGGACAGCGTAGAGAAGGGCGAGCTGGC < 41bp 0.770655466484578 0.537188263051721 0.6702845 0.37764204 prediction 0.466934406865715 Functional Loss - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84486805 chr16:84486808 synonymous SNV . 0 24 hm5C_associated_SNPs_72815 0 0 0 0 2 ATP2C2 chr16:84486841 5'GT 84486841 Upstream 34bp
chr17 80684765 80684765 1 + G A LGG 80684762 + 80684742 80684782 41 ATCATCCCAGCCTTACTCCACGGGGACCTCTGGGGTGGAAA ATCATCCCAGCCTTACTCCACGGAGACCTCTGGGGTGGAAA < 41bp 0.758918430586715 0.525451395661988 0.6341301 0.24400812 prediction 0.466934069849454 Functional Loss - FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80684762 chr17:80684765 synonymous SNV . 0 24 hm5C_associated_SNPs_72816 0 0 1 0 1 FN3KRP chr17:80684709 3'AG 80684709 Downstream 57bp
chr3 49004687 49004687 1 + G A CESC 49004684 + 49004664 49004704 41 GGGAGCAGCACTGCTCAGTTCTCGTCAAGGACGGCGTGGGC GGGAGCAGCACTGCTCAGTTCTCATCAAGGACGGCGTGGGC < 41bp 0.733466942432321 0.489054504009029 0.55652046 0.28809682 prediction 0.466933884864643 Functional Loss - ARIH2 ENSG00000177479 CDS Human protein_coding chr3:49004684 chr3:49004687 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_72817 0 0 1 0 1 ARIH2 chr3:49004708 5'GT 49004708 Upstream 22bp
chr2 113955458 113955458 1 + G A SKCM 113955455 + 113955435 113955475 41 CCGCACGTCTTCCAGCTGCGCACGGCTGACTGGCGCCTCTA CCGCACGTCTTCCAGCTGCGCACAGCTGACTGGCGCCTCTA < 41bp 0.733465649439266 0.484810916111953 0.5071493 0.098389745 prediction 0.466931298878533 Functional Loss - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113955455 chr2:113955458 synonymous SNV . 0 24 hm5C_associated_SNPs_72818 0 0 0 0 1 PSD4 chr2:113955490 5'GT 113955490 Upstream 33bp
chr2 48687004 48687004 1 + C T STAD 48687002 + 48686982 48687022 41 AGCTGTGGTTGACGGTCTCACCCGGAAGTACATGGAAACCA AGCTGTGGTTGACGGTCTCACCTGGAAGTACATGGAAACCA < 41bp 0.733464524216213 0.459254368199669 0.22264352 0.275913 prediction 0.466929048432426 Functional Loss - PPP1R21 ENSG00000162869 CDS Human protein_coding chr2:48687002 chr2:48687004 nonsynonymous SNV 0.953 2 23 hm5C_associated_SNPs_72819 0 0 1 0 1 PPP1R21 chr2:48687057 5'GT 48687057 Upstream 54bp
chr12 3103944 3103944 1 + G A rs112824104 3103941 + 3103921 3103961 41 CCAAGCGGAGCCTTGGAGGGCACGGCCGGCACCATTACCTC CCAAGCGGAGCCTTGGAGGGCACAGCCGGCACCATTACCTC < 41bp 0.7411930152305 0.50773021948246 0.4659954 0.78103286 prediction 0.466925591496081 Functional Loss - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3103941 chr12:3103944 synonymous SNV . 0 24 hm5C_associated_SNPs_72820 0 0 1 0 1 TEAD4 chr12:3103904 3'AG 3103904 Downstream 41bp
chr11 89896515 89896515 1 + G T LUAD 89896512 + 89896492 89896532 41 CTGGGAGGTCACCGGGACTCCTGGGTATTTGGAGCTATTGA CTGGGAGGTCACCGGGACTCCTGTGTATTTGGAGCTATTGA < 41bp 0.733461976815932 0.347414040167098 0.7005893 0.2325741 prediction 0.466923953631865 Functional Loss - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89896512 chr11:89896515 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_72821 0 0 0 0 2 NAALAD2 chr11:89896478 3'AG 89896478 Downstream 38bp
chr11 89896515 89896515 1 + G T LUAD 89896512 + 89896492 89896532 41 CTGGGAGGTCACCGGGACTCCTGGGTATTTGGAGCTATTGA CTGGGAGGTCACCGGGACTCCTGTGTATTTGGAGCTATTGA < 41bp 0.733461976815932 0.347414040167098 0.7005893 0.2325741 prediction 0.466923953631865 Functional Loss - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89896512 chr11:89896515 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_72821 0 0 0 0 2 NAALAD2 chr11:89896597 5'GT 89896597 Upstream 83bp
chr5 156895739 156895739 1 + G A SKCM 156895736 + 156895716 156895756 41 CCTTCGTTTCCTAGTGGCTGCTGGAGAAGTTGCCAACTTTG CCTTCGTTTCCTAGTGGCTGCTGAAGAAGTTGCCAACTTTG < 41bp 0.754035422259342 0.52057486019988 0.644076 0.38200632 prediction 0.466921124118925 Functional Loss - NIPAL4 ENSG00000172548 CDS Human protein_coding chr5:156895736 chr5:156895739 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_72823 0 0 0 1 2 NIPAL4 chr5:156895730 3'AG 156895730 Downstream 10bp
chr5 156895739 156895739 1 + G A SKCM 156895736 + 156895716 156895756 41 CCTTCGTTTCCTAGTGGCTGCTGGAGAAGTTGCCAACTTTG CCTTCGTTTCCTAGTGGCTGCTGAAGAAGTTGCCAACTTTG < 41bp 0.754035422259342 0.52057486019988 0.644076 0.38200632 prediction 0.466921124118925 Functional Loss - NIPAL4 ENSG00000172548 CDS Human protein_coding chr5:156895736 chr5:156895739 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_72823 0 0 0 1 2 NIPAL4 chr5:156895820 5'GT 156895820 Upstream 82bp
chr7 36438949 36438949 1 + G A rs34285732 36438946 + 36438926 36438966 41 TGCAGCCTCCTCAGTTAAAACACGTATGCAAAAACTTGCAG TGCAGCCTCCTCAGTTAAAACACATATGCAAAAACTTGCAG < 41bp 0.738663329208904 0.505202797436154 0.2548026 0.13827205 prediction 0.466921063545499 Functional Loss - ANLN ENSG00000011426 CDS Human protein_coding chr7:36438946 chr7:36438949 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_72824 0 0 1 0 2 ANLN chr7:36438922 3'AG 36438922 Downstream 28bp
chr7 36438949 36438949 1 + G A rs34285732 36438946 + 36438926 36438966 41 TGCAGCCTCCTCAGTTAAAACACGTATGCAAAAACTTGCAG TGCAGCCTCCTCAGTTAAAACACATATGCAAAAACTTGCAG < 41bp 0.738663329208904 0.505202797436154 0.2548026 0.13827205 prediction 0.466921063545499 Functional Loss - ANLN ENSG00000011426 CDS Human protein_coding chr7:36438946 chr7:36438949 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_72824 0 0 1 0 2 ANLN chr7:36439002 5'GT 36439002 Upstream 54bp
chr8 22418864 22418864 1 + G A UCEC 22418861 + 22418841 22418881 41 CCTGCAGACTTGCAGCTGGACTGGACCTTCGAGGAGCCACC CCTGCAGACTTGCAGCTGGACTGAACCTTCGAGGAGCCACC < 41bp 0.752947572055063 0.519498765665539 0.5058435 0.16409022 prediction 0.466897612779049 Functional Loss - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22418861 chr8:22418864 stopgain 0.810 1 24 hm5C_associated_SNPs_72830 0 0 1 0 2 SORBS3 chr8:22418848 3'AG 22418848 Downstream 17bp
chr8 22418864 22418864 1 + G A UCEC 22418861 + 22418841 22418881 41 CCTGCAGACTTGCAGCTGGACTGGACCTTCGAGGAGCCACC CCTGCAGACTTGCAGCTGGACTGAACCTTCGAGGAGCCACC < 41bp 0.752947572055063 0.519498765665539 0.5058435 0.16409022 prediction 0.466897612779049 Functional Loss - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22418861 chr8:22418864 stopgain 0.810 1 24 hm5C_associated_SNPs_72830 0 0 1 0 2 SORBS3 chr8:22418886 5'GT 22418886 Upstream 23bp
chr20 42203600 42203600 1 + T C LUAD 42203599 + 42203579 42203619 41 CCTTATGATCGAGCAGTGGACTGGTGGTGCTTGGGGGCAGT CCTTATGATCGAGCAGTGGACCGGTGGTGCTTGGGGGCAGT < 41bp 0.765294579254736 0.53185241662505 0.30488956 0.25978535 prediction 0.466884325259371 Functional Loss - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42203599 chr20:42203600 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_72832 0 0 1 3 2 SGK2 chr20:42203549 3'AG 42203549 Downstream 52bp
chr20 42203600 42203600 1 + T C LUAD 42203599 + 42203579 42203619 41 CCTTATGATCGAGCAGTGGACTGGTGGTGCTTGGGGGCAGT CCTTATGATCGAGCAGTGGACCGGTGGTGCTTGGGGGCAGT < 41bp 0.765294579254736 0.53185241662505 0.30488956 0.25978535 prediction 0.466884325259371 Functional Loss - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42203599 chr20:42203600 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_72832 0 0 1 3 2 SGK2 chr20:42203644 5'GT 42203644 Upstream 45bp
chr19 6829898 6829898 1 + A T HNSC 6829894 + 6829874 6829914 41 ACCTGCACAGCTTCCAGGTTCGGGATGACTCTTCAGGAGAC ACCTGCACAGCTTCCAGGTTCGGGTTGACTCTTCAGGAGAC < 41bp 0.884087885692454 0.65064857126262 0.9109649 0.6097794 prediction 0.466878628859669 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6829894 chr19:6829898 nonsynonymous SNV 0.995 5 25 hm5C_associated_SNPs_72834 0 0 0 0 1 VAV1 chr19:6829929 5'GT 6829929 Upstream 32bp
chr3 51979111 51979111 1 + G A BLCA 51979108 + 51979088 51979128 41 GAGGAGGCCCTGAAAGGCCCCACGGATGGTGGCCAAAGCCT GAGGAGGCCCTGAAAGGCCCCACAGATGGTGGCCAAAGCCT < 41bp 0.772647130957532 0.539209963729284 0.18819496 0.1505146 prediction 0.466874334456497 Functional Loss - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51979108 chr3:51979111 synonymous SNV . 0 24 hm5C_associated_SNPs_72835 0 0 1 0 1 PARP3 chr3:51979014 3'AG 51979014 Downstream 98bp
chr6 123039017 123039017 1 + C T UCEC 123039015 + 123038995 123039035 41 CATCTTCAGCAAGGGCAGGCCGCCGGAATGCCTTACCAGAC CATCTTCAGCAAGGGCAGGCCGTCGGAATGCCTTACCAGAC < 41bp 0.840276594553713 0.606839511356968 0.06499988 0.033390343 prediction 0.46687416639349 Functional Loss - PKIB ENSG00000135549 CDS Human protein_coding chr6:123039015 chr6:123039017 synonymous SNV . 0 23 hm5C_associated_SNPs_72836 0 0 1 0 2 PKIB chr6:123038932 3'AG 123038932 Downstream 86bp
chr6 123039017 123039017 1 + C T UCEC 123039015 + 123038995 123039035 41 CATCTTCAGCAAGGGCAGGCCGCCGGAATGCCTTACCAGAC CATCTTCAGCAAGGGCAGGCCGTCGGAATGCCTTACCAGAC < 41bp 0.840276594553713 0.606839511356968 0.06499988 0.033390343 prediction 0.46687416639349 Functional Loss - PKIB ENSG00000135549 CDS Human protein_coding chr6:123039015 chr6:123039017 synonymous SNV . 0 23 hm5C_associated_SNPs_72836 0 0 1 0 2 PKIB chr6:123039108 5'GT 123039108 Upstream 92bp
chr1 223947107 223947107 1 + G A GBM 223947104 + 223947084 223947124 41 TGCCGCCAGGAGAGTACATTCTCGTGCCTTCCACCTTCGAA TGCCGCCAGGAGAGTACATTCTCATGCCTTCCACCTTCGAA < 41bp 0.762322493766239 0.528894015842355 0.13828033 0.06476438 prediction 0.466856955847768 Functional Loss - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223947104 chr1:223947107 nonsynonymous SNV 0.922 5 24 hm5C_associated_SNPs_72837 0 0 1 0 1 CAPN2 chr1:223947183 5'GT 223947183 Upstream 77bp
chr14 20813132 20813132 1 + C T SKCM 20813130 + 20813110 20813150 41 AGTTAATAATGGCAACACGGCTCCAGAAGACTCTTCCCCTG AGTTAATAATGGCAACACGGCTTCAGAAGACTCTTCCCCTG < 41bp 0.847313448630956 0.613888888006562 0.8545458 0.088534415 prediction 0.466849121248787 Functional Loss - PARP2 ENSG00000129484 CDS Human protein_coding chr14:20813130 chr14:20813132 nonsynonymous SNV 0.019 0 23 hm5C_associated_SNPs_72838 0 0 1 0 1 PARP2 chr14:20813091 3'AG 20813091 Downstream 42bp
chr4 20619273 20619273 1 + G T LUSC 20619270 + 20619250 20619290 41 ACACGGGGGACAGCTGTGATCGAGGTAAGCCAGCCCCACTG ACACGGGGGACAGCTGTGATCGATGTAAGCCAGCCCCACTG < 41bp 0.915165833552213 0.681741757986354 0.940575 0.56206465 prediction 0.466848151131718 Functional Loss - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20619270 chr4:20619273 stopgain 0.489 1 24 hm5C_associated_SNPs_72839 0 0 0 0 1 SLIT2 chr4:20619273 5'GT 20619273 Upstream 1bp
chr16 23767244 23767244 1 + G A rs200529789 23767241 + 23767221 23767261 41 GAATTATAGAAAGCTTCTTCCCCGATGGGTGAGGCTTGCTG GAATTATAGAAAGCTTCTTCCCCAATGGGTGAGGCTTGCTG < 41bp 0.757658185921304 0.524247228139116 0.08814296 0.08290237 prediction 0.466821915564376 Functional Loss - CHP2 ENSG00000166869 CDS Human protein_coding chr16:23767241 chr16:23767244 nonsynonymous SNV 0.431 0 24 hm5C_associated_SNPs_72845 0 0 0 0 2 CHP2 chr16:23767168 3'AG 23767168 Downstream 77bp
chr16 23767244 23767244 1 + G A rs200529789 23767241 + 23767221 23767261 41 GAATTATAGAAAGCTTCTTCCCCGATGGGTGAGGCTTGCTG GAATTATAGAAAGCTTCTTCCCCAATGGGTGAGGCTTGCTG < 41bp 0.757658185921304 0.524247228139116 0.08814296 0.08290237 prediction 0.466821915564376 Functional Loss - CHP2 ENSG00000166869 CDS Human protein_coding chr16:23767241 chr16:23767244 nonsynonymous SNV 0.431 0 24 hm5C_associated_SNPs_72845 0 0 0 0 2 CHP2 chr16:23767248 5'GT 23767248 Upstream 5bp
chr2 10559958 10559958 1 + C T STAD 10559956 + 10559936 10559976 41 AGAACACGGAGTTCACCGACCACGAGCTGCAGGAGTGGTAC AGAACACGGAGTTCACCGACCATGAGCTGCAGGAGTGGTAC < 41bp 0.814933952101941 0.581532996794348 0.6464266 0.4703381 prediction 0.466801910615187 Functional Loss - HPCAL1 ENSG00000115756 CDS Human protein_coding chr2:10559956 chr2:10559958 synonymous SNV . 0 23 hm5C_associated_SNPs_72849 0 0 0 0 1 HPCAL1 chr2:10559860 3'AG 10559860 Downstream 99bp
chr9 34241267 34241267 1 + A C rs140613134 34241266 + 34241246 34241286 41 GCCGAGCGGGAAGCAGAGTGCAAAATTGCGGAAGCAGAAGC GCCGAGCGGGAAGCAGAGTGCCAAATTGCGGAAGCAGAAGC < 41bp 0.733394421034265 0.482756020871413 0.3566233 0.16827136 prediction 0.466788842068531 Functional Loss - UBAP1 ENSG00000165006 CDS Human protein_coding chr9:34241266 chr9:34241267 nonsynonymous SNV 0.219 1 22 hm5C_associated_SNPs_72852 0 0 1 0 1 UBAP1 chr9:34241183 3'AG 34241183 Downstream 85bp
chr6 24785964 24785964 1 + A C COAD 24785963 + 24785943 24785983 41 GGATTCTCTAGTGGAAGACTCAGAAATTGGCACGTGTGCTG GGATTCTCTAGTGGAAGACTCCGAAATTGGCACGTGTGCTG < 41bp 0.785036593398209 0.551655336773814 0.574766 0.25978473 prediction 0.466762513248791 Functional Loss - GMNN ENSG00000112312 CDS Human protein_coding chr6:24785963 chr6:24785964 synonymous SNV . 0 22 hm5C_associated_SNPs_72854 0 0 1 0 1 GMNN chr6:24785866 3'AG 24785866 Downstream 99bp
chr12 6427086 6427086 1 + G A ACC 6427083 + 6427063 6427103 41 AGGTCCGCCAGGGCGAAGAGCAAGAGAGCTTGGCGGCTGCA AGGTCCGCCAGGGCGAAGAGCAAAAGAGCTTGGCGGCTGCA < 41bp 0.791197684126761 0.557818940085549 0.83274776 0.4926261 prediction 0.466757488082424 Functional Loss - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6427083 chr12:6427086 nonsynonymous SNV 0.963 1 24 hm5C_associated_SNPs_72855 0 0 0 0 2 PLEKHG6 chr12:6427023 3'AG 6427023 Downstream 64bp
chr12 6427086 6427086 1 + G A ACC 6427083 + 6427063 6427103 41 AGGTCCGCCAGGGCGAAGAGCAAGAGAGCTTGGCGGCTGCA AGGTCCGCCAGGGCGAAGAGCAAAAGAGCTTGGCGGCTGCA < 41bp 0.791197684126761 0.557818940085549 0.83274776 0.4926261 prediction 0.466757488082424 Functional Loss - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6427083 chr12:6427086 nonsynonymous SNV 0.963 1 24 hm5C_associated_SNPs_72855 0 0 0 0 2 PLEKHG6 chr12:6427160 5'GT 6427160 Upstream 75bp
chr15 72875582 72875582 1 + G T PAAD 72875580 + 72875560 72875600 41 GTCGACGAAGGGTTTTGTTACAGCATGTGCATGAAGGCTAT GTCGACGAAGGGTTTTGTTACATCATGTGCATGAAGGCTAT < 41bp 0.733375297523376 0.417344922262733 0.21215451 0.09295362 prediction 0.466750595046753 Functional Loss - ARIH1 ENSG00000166233 CDS Human protein_coding chr15:72875580 chr15:72875582 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_72856 0 0 1 0 1 ARIH1 chr15:72875549 3'AG 72875549 Downstream 34bp
chr12 1741902 1741902 1 + G A UCEC 1741899 + 1741879 1741919 41 CCCGTGTGCAGTCAGCTTCCCGGGCTCTCCCCTGGCCAGAG CCCGTGTGCAGTCAGCTTCCCGGACTCTCCCCTGGCCAGAG < 41bp 0.791888697376268 0.558515129810071 0.9264741 0.52065855 prediction 0.466747135132394 Functional Loss - WNT5B ENSG00000111186 CDS Human protein_coding chr12:1741899 chr12:1741902 synonymous SNV . 0 24 hm5C_associated_SNPs_72857 0 0 0 0 1 WNT5B chr12:1741824 3'AG 1741824 Downstream 79bp
chr17 21075427 21075427 1 + G A SKCM 21075424 + 21075404 21075444 41 CTGGGCGTCTTCGGCCTCTTCCGGCTGCTGCAGTGGGTGCG CTGGGCGTCTTCGGCCTCTTCCGACTGCTGCAGTGGGTGCG < 41bp 0.73336968056068 0.474319770428865 0.9014394 0.8543112 prediction 0.466739361121361 Functional Loss - DHRS7B ENSG00000109016 CDS Human protein_coding chr17:21075424 chr17:21075427 synonymous SNV . 0 24 hm5C_associated_SNPs_72860 0 0 1 0 2 DHRS7B chr17:21075331 3'AG 21075331 Downstream 97bp
chr17 21075427 21075427 1 + G A SKCM 21075424 + 21075404 21075444 41 CTGGGCGTCTTCGGCCTCTTCCGGCTGCTGCAGTGGGTGCG CTGGGCGTCTTCGGCCTCTTCCGACTGCTGCAGTGGGTGCG < 41bp 0.73336968056068 0.474319770428865 0.9014394 0.8543112 prediction 0.466739361121361 Functional Loss - DHRS7B ENSG00000109016 CDS Human protein_coding chr17:21075424 chr17:21075427 synonymous SNV . 0 24 hm5C_associated_SNPs_72860 0 0 1 0 2 DHRS7B chr17:21075509 5'GT 21075509 Upstream 83bp
chr14 24646742 24646742 1 + T C rs201931905 24646741 + 24646721 24646761 41 GCTGGGAACCTGGGGCCCTACTCATGGGTGAGTGCCCACCA GCTGGGAACCTGGGGCCCTACCCATGGGTGAGTGCCCACCA < 41bp 0.733360808990526 0.47698602350994 0.17833742 0.23051617 prediction 0.466721617981053 Functional Loss - REC8 ENSG00000100918 CDS Human protein_coding chr14:24646741 chr14:24646742 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_72865 0 0 1 0 1 REC8 chr14:24646747 5'GT 24646747 Upstream 6bp
chr12 132633428 132633428 1 + G A STAD 132633425 + 132633405 132633445 41 TCATGATCGACTTCCTCACCCGCGCCTGCGACCTCGGTGAG TCATGATCGACTTCCTCACCCGCACCTGCGACCTCGGTGAG < 41bp 0.733360092918317 0.483672967535198 0.32799193 0.17613876 prediction 0.466720185836634 Functional Loss - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132633425 chr12:132633428 nonsynonymous SNV 0.010 2 24 hm5C_associated_SNPs_72866 0 0 0 0 2 NOC4L chr12:132633329 3'AG 132633329 Downstream 100bp
chr12 132633428 132633428 1 + G A STAD 132633425 + 132633405 132633445 41 TCATGATCGACTTCCTCACCCGCGCCTGCGACCTCGGTGAG TCATGATCGACTTCCTCACCCGCACCTGCGACCTCGGTGAG < 41bp 0.733360092918317 0.483672967535198 0.32799193 0.17613876 prediction 0.466720185836634 Functional Loss - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132633425 chr12:132633428 nonsynonymous SNV 0.010 2 24 hm5C_associated_SNPs_72866 0 0 0 0 2 NOC4L chr12:132633440 5'GT 132633440 Upstream 13bp
chr19 17339705 17339705 1 + G A SKCM 17339702 + 17339682 17339722 41 AGATCCAGAAATTCGATGACCAAGGAGACAGCGAGGGCTCC AGATCCAGAAATTCGATGACCAAAGAGACAGCGAGGGCTCC < 41bp 0.740602471694842 0.507243012935285 0.3564914 0.07760292 prediction 0.466718917519114 Functional Loss - OCEL1 ENSG00000099330 CDS Human protein_coding chr19:17339702 chr19:17339705 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_72867 0 0 0 0 1 OCEL1 chr19:17339612 3'AG 17339612 Downstream 94bp
chr16 31424236 31424236 1 + G A UCEC 31424233 + 31424213 31424253 41 AGTGGGGGTCAGGACCTCACCCAGGATGGACTGATGGACCT AGTGGGGGTCAGGACCTCACCCAAGATGGACTGATGGACCT < 41bp 0.77458629374995 0.541235105858016 0.11330056 0.07863173 prediction 0.466702375783868 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31424233 chr16:31424236 synonymous SNV . 0 24 hm5C_associated_SNPs_72870 0 0 0 0 2 ITGAD chr16:31424159 3'AG 31424159 Downstream 78bp
chr16 31424236 31424236 1 + G A UCEC 31424233 + 31424213 31424253 41 AGTGGGGGTCAGGACCTCACCCAGGATGGACTGATGGACCT AGTGGGGGTCAGGACCTCACCCAAGATGGACTGATGGACCT < 41bp 0.77458629374995 0.541235105858016 0.11330056 0.07863173 prediction 0.466702375783868 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31424233 chr16:31424236 synonymous SNV . 0 24 hm5C_associated_SNPs_72870 0 0 0 0 2 ITGAD chr16:31424289 5'GT 31424289 Upstream 54bp
chr19 49438360 49438360 1 + C T KIRP 49438358 + 49438338 49438378 41 TATGAGGAGCTGGCCAAGGACCCGAGCGTGGGTGAGTGGCG TATGAGGAGCTGGCCAAGGACCTGAGCGTGGGTGAGTGGCG < 41bp 0.81493508915078 0.581590099482397 0.2844202 0.13006368 prediction 0.466689979336766 Functional Loss - DHDH ENSG00000104808 CDS Human protein_coding chr19:49438358 chr19:49438360 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_72872 0 0 0 0 1 DHDH chr19:49438368 5'GT 49438368 Upstream 9bp
chr22 38870562 38870562 1 + C T SKCM 38870560 + 38870540 38870580 41 AGAGCCAGATCCTGTTTGCTCTCGTCTTCACCACCAGGTAC AGAGCCAGATCCTGTTTGCTCTTGTCTTCACCACCAGGTAC < 41bp 0.806652605326952 0.573313723909492 0.080334485 0.057313234 prediction 0.46667776283492 Functional Loss - KDELR3 ENSG00000100196 CDS Human protein_coding chr22:38870560 chr22:38870562 synonymous SNV . 0 23 hm5C_associated_SNPs_72875 0 0 1 0 2 KDELR3 chr22:38870528 3'AG 38870528 Downstream 35bp
chr22 38870562 38870562 1 + C T SKCM 38870560 + 38870540 38870580 41 AGAGCCAGATCCTGTTTGCTCTCGTCTTCACCACCAGGTAC AGAGCCAGATCCTGTTTGCTCTTGTCTTCACCACCAGGTAC < 41bp 0.806652605326952 0.573313723909492 0.080334485 0.057313234 prediction 0.46667776283492 Functional Loss - KDELR3 ENSG00000100196 CDS Human protein_coding chr22:38870560 chr22:38870562 synonymous SNV . 0 23 hm5C_associated_SNPs_72875 0 0 1 0 2 KDELR3 chr22:38870628 5'GT 38870628 Upstream 67bp
chr8 27293308 27293308 1 + G A rs41276291 27293305 + 27293285 27293325 41 CGACGAAACCCTGCGAAGGCCCGGAGGTAGGTTCTCGACCC CGACGAAACCCTGCGAAGGCCCGAAGGTAGGTTCTCGACCC < 41bp 0.750741382025703 0.517407648621835 0.90058625 0.34535915 prediction 0.466667466807737 Functional Loss - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27293305 chr8:27293308 nonsynonymous SNV 0.371 1 24 hm5C_associated_SNPs_72879 0 0 1 0 1 PTK2B chr8:27293310 5'GT 27293310 Upstream 3bp
chrX 79281183 79281183 1 + G A COAD 79281180 + 79281160 79281200 41 ATTCCTAGATTCTATGTTCACCCGGACTCACCCTGCTCGGG ATTCCTAGATTCTATGTTCACCCAGACTCACCCTGCTCGGG < 41bp 0.758457147687771 0.525125647558298 0.11988649 0.07120705 prediction 0.466663000258945 Functional Loss - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79281180 chrX:79281183 synonymous SNV . 0 24 hm5C_associated_SNPs_72882 0 0 0 0 2 TBX22 chrX:79281102 3'AG 79281102 Downstream 82bp
chrX 79281183 79281183 1 + G A COAD 79281180 + 79281160 79281200 41 ATTCCTAGATTCTATGTTCACCCGGACTCACCCTGCTCGGG ATTCCTAGATTCTATGTTCACCCAGACTCACCCTGCTCGGG < 41bp 0.758457147687771 0.525125647558298 0.11988649 0.07120705 prediction 0.466663000258945 Functional Loss - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79281180 chrX:79281183 synonymous SNV . 0 24 hm5C_associated_SNPs_72882 0 0 0 0 2 TBX22 chrX:79281276 5'GT 79281276 Upstream 94bp
chr9 133280388 133280388 1 + G T SARC 133280385 + 133280365 133280405 41 CAAAGATGGCCAGCCTGTGTCGGGCGCCGAGGGGAAGTTCA CAAAGATGGCCAGCCTGTGTCGGTCGCCGAGGGGAAGTTCA < 41bp 0.733328630958567 0.336922859316601 0.931458 0.49169013 prediction 0.466657261917135 Functional Loss - HMCN2 ENSG00000215428 CDS Human other chr9:133280385 chr9:133280388 nonsynonymous SNV 0.005 2 24 hm5C_associated_SNPs_72884 0 0 0 0 1 HMCN2 chr9:133280446 5'GT 133280446 Upstream 59bp
chr19 16964967 16964967 1 + T C KIRP 16964966 + 16964946 16964986 41 CTCTGCAGGTCCGCCGGGTGCTGAAGAGCCAGGAGGTGTAT CTCTGCAGGTCCGCCGGGTGCCGAAGAGCCAGGAGGTGTAT < 41bp 0.733328251529156 0.476808055930253 0.5934303 0.5877602 prediction 0.466656503058312 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16964966 chr19:16964967 nonsynonymous SNV 0.983 4 22 hm5C_associated_SNPs_72885 0 0 1 0 1 SIN3B chr19:16964954 3'AG 16964954 Downstream 14bp
chr9 135462894 135462894 1 + C T HNSC 135462892 + 135462872 135462912 41 GCATGGAGCTCGCCGCCTCGCTCAACCTCACCGACACGCAG GCATGGAGCTCGCCGCCTCGCTTAACCTCACCGACACGCAG < 41bp 0.733328014692716 0.458571922883907 0.2624525 0.028574526 prediction 0.466656029385431 Functional Loss - BARHL1 ENSG00000125492 CDS Human protein_coding chr9:135462892 chr9:135462894 synonymous SNV . 0 23 hm5C_associated_SNPs_72886 0 0 0 0 1 BARHL1 chr9:135462938 5'GT 135462938 Upstream 45bp
chr16 19663353 19663353 1 + G A COAD 19663350 + 19663330 19663370 41 CTCCCTGGCGGGCATCTTCACACGTCTCAATCTCTACCTGC CTCCCTGGCGGGCATCTTCACACATCTCAATCTCTACCTGC < 41bp 0.76614363023431 0.532823883881767 0.11635408 0.018497288 prediction 0.466639492705084 Functional Loss - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19663350 chr16:19663353 nonsynonymous SNV 0.864 4 24 hm5C_associated_SNPs_72888 0 0 0 0 2 C16orf62 chr16:19663298 3'AG 19663298 Downstream 56bp
chr16 19663353 19663353 1 + G A COAD 19663350 + 19663330 19663370 41 CTCCCTGGCGGGCATCTTCACACGTCTCAATCTCTACCTGC CTCCCTGGCGGGCATCTTCACACATCTCAATCTCTACCTGC < 41bp 0.76614363023431 0.532823883881767 0.11635408 0.018497288 prediction 0.466639492705084 Functional Loss - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19663350 chr16:19663353 nonsynonymous SNV 0.864 4 24 hm5C_associated_SNPs_72888 0 0 0 0 2 C16orf62 chr16:19663412 5'GT 19663412 Upstream 60bp
chr16 57741405 57741405 1 + G A STAD 57741402 + 57741382 57741422 41 AGGCAAAGCCGGATGCCCTGCACGGCCTGCGGGTGCACTCC AGGCAAAGCCGGATGCCCTGCACAGCCTGCGGGTGCACTCC < 41bp 0.783847730370291 0.550528750319524 0.39191884 0.21350628 prediction 0.466637960101533 Functional Loss - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57741402 chr16:57741405 nonsynonymous SNV 0.633 4 24 hm5C_associated_SNPs_72889 0 0 0 0 1 DRC7 chr16:57741372 3'AG 57741372 Downstream 34bp
chr20 18774864 18774864 1 - C T rs41309831 18774867 - 18774847 18774887 41 CCTGAGAGCTGAATCTGCCGCAGGCCCGCGGGCCGCCCGGG CCTGAGAGCTGAATCTGCCGCAGACCCGCGGGCCGCCCGGG < 41bp 0.733318638190558 0.495630335429104 0.85262805 0.432755 prediction 0.466637276381117 Functional Loss - LINC00652;LOC100270804 ENSG00000179935 ncRNA_exonic Human lincRNA chr20:18774867 chr20:18774864 . . 0 24 hm5C_associated_SNPs_72890 0 0 0 0 1 LINC00652;LOC100270804 chr20:18774812 5'GT 18774812 Upstream 53bp
chr5 148586587 148586587 1 + G T COAD 148586584 + 148586564 148586604 41 CTTGCAGACTGTGCCGGGTGCAAGGAGGAGATCAAGCACGG CTTGCAGACTGTGCCGGGTGCAATGAGGAGATCAAGCACGG < 41bp 0.733318435574322 0.329611451868231 0.8093541 0.2728635 prediction 0.466636871148644 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148586584 chr5:148586587 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_72891 0 0 0 0 1 ABLIM3 chr5:148586571 3'AG 148586571 Downstream 17bp
chr12 4657923 4657923 1 + T C LIHC 4657922 + 4657902 4657942 41 AAGAAAAGCAGCATCTAAAGCTGCAGCACAGCAGAGGAAGA AAGAAAAGCAGCATCTAAAGCCGCAGCACAGCAGAGGAAGA < 41bp 0.800130761902288 0.566818478165094 0.21374974 0.37474528 prediction 0.466624567474389 Functional Loss - RAD51AP1 ENSG00000111247 CDS Human protein_coding chr12:4657922 chr12:4657923 synonymous SNV . 0 22 hm5C_associated_SNPs_72893 0 0 1 0 2 RAD51AP1 chr12:4657853 3'AG 4657853 Downstream 71bp
chr12 4657923 4657923 1 + T C LIHC 4657922 + 4657902 4657942 41 AAGAAAAGCAGCATCTAAAGCTGCAGCACAGCAGAGGAAGA AAGAAAAGCAGCATCTAAAGCCGCAGCACAGCAGAGGAAGA < 41bp 0.800130761902288 0.566818478165094 0.21374974 0.37474528 prediction 0.466624567474389 Functional Loss - RAD51AP1 ENSG00000111247 CDS Human protein_coding chr12:4657922 chr12:4657923 synonymous SNV . 0 22 hm5C_associated_SNPs_72893 0 0 1 0 2 RAD51AP1 chr12:4658002 5'GT 4658002 Upstream 80bp
chr17 28508034 28508034 1 + G T UCEC 28508032 + 28508012 28508052 41 AAATGCAGCTTTCGTGAAGCCAGGTGAGGAGACGTGTATGA AAATGCAGCTTTCGTGAAGCCATGTGAGGAGACGTGTATGA < 41bp 0.733311831957468 0.395871280813563 0.92546415 0.6727572 prediction 0.466623663914935 Functional Loss - NSRP1 ENSG00000126653 CDS Human protein_coding chr17:28508032 chr17:28508034 nonsynonymous SNV 0.923 1 23 hm5C_associated_SNPs_72894 0 0 1 0 1 NSRP1 chr17:28508034 5'GT 28508034 Upstream 1bp
chr11 118404209 118404209 1 + G T KIRC 118404206 + 118404186 118404226 41 CTGGGCTTGCACTGGGCACCCTCGTGGGGTTCAGCACCTTG CTGGGCTTGCACTGGGCACCCTCTTGGGGTTCAGCACCTTG < 41bp 0.733306117619566 0.344486670130638 0.096950084 0.034089 prediction 0.466612235239133 Functional Loss - TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118404206 chr11:118404209 nonsynonymous SNV 0.976 1 24 hm5C_associated_SNPs_72897 0 0 1 0 2 TMEM25 chr11:118404135 3'AG 118404135 Downstream 75bp
chr11 118404209 118404209 1 + G T KIRC 118404206 + 118404186 118404226 41 CTGGGCTTGCACTGGGCACCCTCGTGGGGTTCAGCACCTTG CTGGGCTTGCACTGGGCACCCTCTTGGGGTTCAGCACCTTG < 41bp 0.733306117619566 0.344486670130638 0.096950084 0.034089 prediction 0.466612235239133 Functional Loss - TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118404206 chr11:118404209 nonsynonymous SNV 0.976 1 24 hm5C_associated_SNPs_72897 0 0 1 0 2 TMEM25 chr11:118404266 5'GT 118404266 Upstream 58bp
chr11 118404208 118404208 1 + C T THYM 118404206 + 118404186 118404226 41 CTGGGCTTGCACTGGGCACCCTCGTGGGGTTCAGCACCTTG CTGGGCTTGCACTGGGCACCCTTGTGGGGTTCAGCACCTTG < 41bp 0.733306117619566 0.45313589336901 0.096950084 0.102365375 prediction 0.466612235239133 Functional Loss - TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118404206 chr11:118404208 synonymous SNV . 0 23 hm5C_associated_SNPs_72898 0 0 1 0 2 TMEM25 chr11:118404135 3'AG 118404135 Downstream 74bp
chr11 118404208 118404208 1 + C T THYM 118404206 + 118404186 118404226 41 CTGGGCTTGCACTGGGCACCCTCGTGGGGTTCAGCACCTTG CTGGGCTTGCACTGGGCACCCTTGTGGGGTTCAGCACCTTG < 41bp 0.733306117619566 0.45313589336901 0.096950084 0.102365375 prediction 0.466612235239133 Functional Loss - TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118404206 chr11:118404208 synonymous SNV . 0 23 hm5C_associated_SNPs_72898 0 0 1 0 2 TMEM25 chr11:118404266 5'GT 118404266 Upstream 59bp
chr3 127981041 127981041 1 + C T SARC 127981039 + 127981019 127981059 41 AGAGGCCCCCGAAACTGAAGCTCCACAGGGCATTCCAGAGC AGAGGCCCCCGAAACTGAAGCTTCACAGGGCATTCCAGAGC < 41bp 0.733301021212456 0.455051554809097 0.91476333 0.19118974 prediction 0.466602042424912 Functional Loss - EEFSEC ENSG00000132394 CDS Human protein_coding chr3:127981039 chr3:127981041 nonsynonymous SNV 0.980 1 23 hm5C_associated_SNPs_72903 0 0 1 0 2 EEFSEC chr3:127980971 3'AG 127980971 Downstream 71bp
chr3 127981041 127981041 1 + C T SARC 127981039 + 127981019 127981059 41 AGAGGCCCCCGAAACTGAAGCTCCACAGGGCATTCCAGAGC AGAGGCCCCCGAAACTGAAGCTTCACAGGGCATTCCAGAGC < 41bp 0.733301021212456 0.455051554809097 0.91476333 0.19118974 prediction 0.466602042424912 Functional Loss - EEFSEC ENSG00000132394 CDS Human protein_coding chr3:127981039 chr3:127981041 nonsynonymous SNV 0.980 1 23 hm5C_associated_SNPs_72903 0 0 1 0 2 EEFSEC chr3:127981067 5'GT 127981067 Upstream 27bp
chr1 155282083 155282083 1 + G T STAD 155282081 + 155282061 155282101 41 GCCATTGGAGGCAAGTATAACCGGGGTTTGACGGTGGTAGT GCCATTGGAGGCAAGTATAACCTGGGTTTGACGGTGGTAGT < 41bp 0.733293416649311 0.381093610783968 0.90621567 0.2975823 prediction 0.466586833298622 Functional Loss - FDPS ENSG00000160752 CDS Human protein_coding chr1:155282081 chr1:155282083 nonsynonymous SNV 0.590 4 23 hm5C_associated_SNPs_72907 0 0 1 0 1 FDPS chr1:155282046 3'AG 155282046 Downstream 38bp
chr7 76891575 76891575 1 + G T KIRC 76891573 + 76891553 76891593 41 GAACTGCTCTTGAAAGTGTCCTGGGATGCACTTAGGCAAAC GAACTGCTCTTGAAAGTGTCCTTGGATGCACTTAGGCAAAC < 41bp 0.733292120854724 0.400184829153667 0.38808268 0.0568493 prediction 0.466584241709447 Functional Loss - CCDC146 ENSG00000135205 CDS Human protein_coding chr7:76891573 chr7:76891575 nonsynonymous SNV 0.225 0 23 hm5C_associated_SNPs_72908 0 0 0 0 1 CCDC146 chr7:76891624 5'GT 76891624 Upstream 50bp
chr22 40755001 40755001 1 + G A rs148411623 40754998 + 40754978 40755018 41 TAAAGGGTACCACTGGCACTCAGGCCAGTTTCCTGCAGCTC TAAAGGGTACCACTGGCACTCAGACCAGTTTCCTGCAGCTC < 41bp 0.753592259168509 0.520307429980166 0.93374574 0.91596776 prediction 0.466569658376687 Functional Loss - ADSL ENSG00000239900 CDS Human protein_coding chr22:40754998 chr22:40755001 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_72913 0 0 1 2 1 ADSL chr22:40755039 5'GT 40755039 Upstream 39bp
chr6 18161622 18161622 1 + G T UCEC 18161620 + 18161600 18161640 41 GGTGGCTCAGAGAAGAAGTACAGGAAATGTGAAAAGGCAGG GGTGGCTCAGAGAAGAAGTACATGAAATGTGAAAAGGCAGG < 41bp 0.733281944723322 0.386743401998223 0.8420603 0.34042376 prediction 0.466563889446643 Functional Loss - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18161620 chr6:18161622 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_72914 0 0 0 0 2 KDM1B chr6:18161558 3'AG 18161558 Downstream 65bp
chr6 18161622 18161622 1 + G T UCEC 18161620 + 18161600 18161640 41 GGTGGCTCAGAGAAGAAGTACAGGAAATGTGAAAAGGCAGG GGTGGCTCAGAGAAGAAGTACATGAAATGTGAAAAGGCAGG < 41bp 0.733281944723322 0.386743401998223 0.8420603 0.34042376 prediction 0.466563889446643 Functional Loss - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18161620 chr6:18161622 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_72914 0 0 0 0 2 KDM1B chr6:18161685 5'GT 18161685 Upstream 64bp
chr2 79255386 79255386 1 + G T KIRC 79255384 + 79255364 79255404 41 GATGCAAAGTTACCCTATGTCTGCAAGTTCAAGGACTAGGG GATGCAAAGTTACCCTATGTCTTCAAGTTCAAGGACTAGGG < 41bp 0.877890809516726 0.644612436058025 0.20661467 0.15097508 prediction 0.466556746917402 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79255384 chr2:79255386 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_72917 0 0 0 0 1 REG3G chr2:79255335 3'AG 79255335 Downstream 52bp
chr1 156844703 156844703 1 + G A LUSC 156844700 + 156844680 156844720 41 ACCCCTGTCCCCCACCAGGTCTCGGTGGCTGTGGGCCTGGC ACCCCTGTCCCCCACCAGGTCTCAGTGGCTGTGGGCCTGGC < 41bp 0.767881861865161 0.534614077437073 0.19974428 0.12334213 prediction 0.466535568856176 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156844700 chr1:156844703 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_72921 0 0 1 0 2 NTRK1 chr1:156844698 3'AG 156844698 Downstream 6bp
chr1 156844703 156844703 1 + G A LUSC 156844700 + 156844680 156844720 41 ACCCCTGTCCCCCACCAGGTCTCGGTGGCTGTGGGCCTGGC ACCCCTGTCCCCCACCAGGTCTCAGTGGCTGTGGGCCTGGC < 41bp 0.767881861865161 0.534614077437073 0.19974428 0.12334213 prediction 0.466535568856176 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156844700 chr1:156844703 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_72921 0 0 1 0 2 NTRK1 chr1:156844800 5'GT 156844800 Upstream 98bp
chr11 2939325 2939325 1 + G T COAD 2939323 + 2939303 2939343 41 GGTGGCCTCCAACTGCCCCACAGGTGAGTCCCAACTACTGC GGTGGCCTCCAACTGCCCCACATGTGAGTCCCAACTACTGC < 41bp 0.733267718116227 0.380268655221288 0.8809862 0.3206152 prediction 0.466535436232455 Functional Loss - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2939323 chr11:2939325 nonsynonymous SNV 0.039 4 23 hm5C_associated_SNPs_72922 0 0 1 0 1 SLC22A18 chr11:2939325 5'GT 2939325 Upstream 1bp
chr4 3447966 3447966 1 + G T UCEC 3447964 + 3447944 3447984 41 CATCGGGGACAGCTTCTGCGCCGGGAGCCTGGTCCACACCT CATCGGGGACAGCTTCTGCGCCTGGAGCCTGGTCCACACCT < 41bp 0.733267687380558 0.372007980074129 0.8672641 0.2384595 prediction 0.466535374761115 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3447964 chr4:3447966 nonsynonymous SNV 0.058 5 23 hm5C_associated_SNPs_72923 0 0 1 0 1 HGFAC chr4:3448021 5'GT 3448021 Upstream 56bp
chr10 99424653 99424653 1 + G A UCEC 99424650 + 99424630 99424670 41 CTTGCTCTTCAGGACACAGACTGGGTGGTGGTGAAGGAGCC CTTGCTCTTCAGGACACAGACTGAGTGGTGGTGAAGGAGCC < 41bp 0.733267603352371 0.494863325239822 0.3141924 0.09891212 prediction 0.466535206704741 Functional Loss - PI4K2A ENSG00000155252;ENSG00000249967 CDS Human other chr10:99424650 chr10:99424653 stopgain 1.000 1 24 hm5C_associated_SNPs_72924 0 0 1 0 2 PI4K2A chr10:99424642 3'AG 99424642 Downstream 12bp
chr10 99424653 99424653 1 + G A UCEC 99424650 + 99424630 99424670 41 CTTGCTCTTCAGGACACAGACTGGGTGGTGGTGAAGGAGCC CTTGCTCTTCAGGACACAGACTGAGTGGTGGTGAAGGAGCC < 41bp 0.733267603352371 0.494863325239822 0.3141924 0.09891212 prediction 0.466535206704741 Functional Loss - PI4K2A ENSG00000155252;ENSG00000249967 CDS Human other chr10:99424650 chr10:99424653 stopgain 1.000 1 24 hm5C_associated_SNPs_72924 0 0 1 0 2 PI4K2A chr10:99424741 5'GT 99424741 Upstream 89bp
chr1 43770806 43770806 1 + C T STAD 43770804 + 43770784 43770824 41 CGGTGCTGGGGCGCGGCGCACGCGCGTCATCTACGTGCACA CGGTGCTGGGGCGCGGCGCACGTGCGTCATCTACGTGCACA < 41bp 0.773315367721824 0.540049618953878 0.3662871 0.26315475 prediction 0.466531497535893 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43770804 chr1:43770806 nonsynonymous SNV 0.021 2 23 hm5C_associated_SNPs_72927 0 0 0 0 1 TIE1 chr1:43770836 5'GT 43770836 Upstream 31bp
chr17 79985312 79985312 1 + G A HNSC 79985309 + 79985289 79985329 41 AAGCAGCGAGAAGAGATGGCCAAGAGCAGCAGGTGAGCGGG AAGCAGCGAGAAGAGATGGCCAAAAGCAGCAGGTGAGCGGG < 41bp 0.753463026618946 0.520197962227563 0.5121985 0.3544348 prediction 0.466530128782766 Functional Loss - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79985309 chr17:79985312 synonymous SNV . 0 24 hm5C_associated_SNPs_72928 0 0 1 0 2 LRRC45 chr17:79985262 3'AG 79985262 Downstream 51bp
chr17 79985312 79985312 1 + G A HNSC 79985309 + 79985289 79985329 41 AAGCAGCGAGAAGAGATGGCCAAGAGCAGCAGGTGAGCGGG AAGCAGCGAGAAGAGATGGCCAAAAGCAGCAGGTGAGCGGG < 41bp 0.753463026618946 0.520197962227563 0.5121985 0.3544348 prediction 0.466530128782766 Functional Loss - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79985309 chr17:79985312 synonymous SNV . 0 24 hm5C_associated_SNPs_72928 0 0 1 0 2 LRRC45 chr17:79985320 5'GT 79985320 Upstream 9bp
chr5 148629384 148629384 1 + G A UCEC 148629381 + 148629361 148629401 41 GCTTTTCTCTCCTGCAGCCCCTCGGTCGCACTACCTGGCTG GCTTTTCTCTCCTGCAGCCCCTCAGTCGCACTACCTGGCTG < 41bp 0.758768260501933 0.525504414277125 0.22753811 0.13405225 prediction 0.466527692449617 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148629381 chr5:148629384 nonsynonymous SNV 0.783 0 24 hm5C_associated_SNPs_72929 0 0 0 0 2 ABLIM3 chr5:148629378 3'AG 148629378 Downstream 7bp
chr5 148629384 148629384 1 + G A UCEC 148629381 + 148629361 148629401 41 GCTTTTCTCTCCTGCAGCCCCTCGGTCGCACTACCTGGCTG GCTTTTCTCTCCTGCAGCCCCTCAGTCGCACTACCTGGCTG < 41bp 0.758768260501933 0.525504414277125 0.22753811 0.13405225 prediction 0.466527692449617 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148629381 chr5:148629384 nonsynonymous SNV 0.783 0 24 hm5C_associated_SNPs_72929 0 0 0 0 2 ABLIM3 chr5:148629407 5'GT 148629407 Upstream 24bp
chr22 45944543 45944543 1 + T C STAD 45944542 + 45944522 45944562 41 GGCCACATCTGCTCCTACCGCTGCATCAACATCCCTGGAAG GGCCACATCTGCTCCTACCGCCGCATCAACATCCCTGGAAG < 41bp 0.817544112459353 0.584283993174503 0.05834639 0.10008097 prediction 0.4665202385697 Functional Loss - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45944542 chr22:45944543 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_72930 0 0 1 0 2 FBLN1 chr22:45944493 3'AG 45944493 Downstream 51bp
chr22 45944543 45944543 1 + T C STAD 45944542 + 45944522 45944562 41 GGCCACATCTGCTCCTACCGCTGCATCAACATCCCTGGAAG GGCCACATCTGCTCCTACCGCCGCATCAACATCCCTGGAAG < 41bp 0.817544112459353 0.584283993174503 0.05834639 0.10008097 prediction 0.4665202385697 Functional Loss - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45944542 chr22:45944543 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_72930 0 0 1 0 2 FBLN1 chr22:45944624 5'GT 45944624 Upstream 82bp
chr3 188933138 188933138 1 + G T LUSC 188933136 + 188933116 188933156 41 AGGTCACGTAGCTGAGACTTCTGGAGAGACCATTCAAGGCT AGGTCACGTAGCTGAGACTTCTTGAGAGACCATTCAAGGCT < 41bp 0.885388827998061 0.652130565120909 0.37978315 0.17739025 prediction 0.466516525754305 Functional Loss - TPRG1 ENSG00000188001 CDS Human protein_coding chr3:188933136 chr3:188933138 stopgain 0.994 1 23 hm5C_associated_SNPs_72932 0 0 0 0 2 TPRG1 chr3:188933081 3'AG 188933081 Downstream 58bp
chr3 188933138 188933138 1 + G T LUSC 188933136 + 188933116 188933156 41 AGGTCACGTAGCTGAGACTTCTGGAGAGACCATTCAAGGCT AGGTCACGTAGCTGAGACTTCTTGAGAGACCATTCAAGGCT < 41bp 0.885388827998061 0.652130565120909 0.37978315 0.17739025 prediction 0.466516525754305 Functional Loss - TPRG1 ENSG00000188001 CDS Human protein_coding chr3:188933136 chr3:188933138 stopgain 0.994 1 23 hm5C_associated_SNPs_72932 0 0 0 0 2 TPRG1 chr3:188933172 5'GT 188933172 Upstream 35bp
chr7 75511505 75511505 1 + C T LUAD 75511503 + 75511483 75511523 41 TGGGTGCCTCGTGGCTCATTCCCCAGACCTCTTTCCTCAGT TGGGTGCCTCGTGGCTCATTCCTCAGACCTCTTTCCTCAGT < 41bp 0.733254207632883 0.452318779403519 0.036189377 0.04216382 prediction 0.466508415265765 Functional Loss - RHBDD2 ENSG00000005486 CDS Human protein_coding chr7:75511503 chr7:75511505 synonymous SNV . 0 23 hm5C_associated_SNPs_72933 0 0 1 0 1 RHBDD2 chr7:75511554 5'GT 75511554 Upstream 50bp
chr7 5336794 5336794 1 + G A CESC 5336791 + 5336771 5336811 41 TGGGCAGGGGCTATGGCTACCGCGTGCACCACGACGTTGTC TGGGCAGGGGCTATGGCTACCGCATGCACCACGACGTTGTC < 41bp 0.751546808973829 0.518293774357223 0.7610595 0.58213437 prediction 0.466506069233213 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5336791 chr7:5336794 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_72934 0 0 0 0 1 SLC29A4 chr7:5336829 5'GT 5336829 Upstream 36bp
chr14 100182497 100182497 1 + G C BLCA 100182496 + 100182476 100182516 41 GAAGAGGGAGCCCAGGACGACGAGGGTCTGCTGGACAACTT GAAGAGGGAGCCCAGGACGACCAGGGTCTGCTGGACAACTT < 41bp 0.733242038889179 0.417150654131798 0.80615926 0.49118006 prediction 0.466484077778358 Functional Loss - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100182496 chr14:100182497 nonsynonymous SNV 0.865 1 22 hm5C_associated_SNPs_72936 0 0 0 0 2 CYP46A1 chr14:100182474 3'AG 100182474 Downstream 24bp
chr14 100182497 100182497 1 + G C BLCA 100182496 + 100182476 100182516 41 GAAGAGGGAGCCCAGGACGACGAGGGTCTGCTGGACAACTT GAAGAGGGAGCCCAGGACGACCAGGGTCTGCTGGACAACTT < 41bp 0.733242038889179 0.417150654131798 0.80615926 0.49118006 prediction 0.466484077778358 Functional Loss - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100182496 chr14:100182497 nonsynonymous SNV 0.865 1 22 hm5C_associated_SNPs_72936 0 0 0 0 2 CYP46A1 chr14:100182536 5'GT 100182536 Upstream 40bp
chr1 78245408 78245408 1 + G T CESC 78245405 + 78245385 78245425 41 CGTGGGCAGGCCAGCTGTACCTGGCCTGGAGCTCCAGGTAC CGTGGGCAGGCCAGCTGTACCTGTCCTGGAGCTCCAGGTAC < 41bp 0.912019963933249 0.678783012574245 0.56687146 0.37832248 prediction 0.466473902718009 Functional Loss - MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78245405 chr1:78245408 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_72937 0 0 0 0 1 MIGA1 chr1:78245421 5'GT 78245421 Upstream 14bp
chr11 8060559 8060559 1 + G A SKCM 8060556 + 8060536 8060576 41 GGAAACCTGGGCCCCTGAAACGGGGCCACCGAAGAGATCGG GGAAACCTGGGCCCCTGAAACGGAGCCACCGAAGAGATCGG < 41bp 0.764559871974833 0.531324178461772 0.9171739 0.88616264 prediction 0.466471387026122 Functional Loss - TUB ENSG00000166402 CDS Human protein_coding chr11:8060556 chr11:8060559 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_72939 0 0 0 0 1 TUB chr11:8060575 5'GT 8060575 Upstream 17bp
chr12 113664623 113664623 1 + G A rs186758678 113664620 + 113664600 113664640 41 ACCAGAGACTATTTCAAGCCCTGGATATCATATCCTGAGGG ACCAGAGACTATTTCAAGCCCTGAATATCATATCCTGAGGG < 41bp 0.733234682735537 0.489785731622087 0.24256116 0.1389673 prediction 0.466469365471075 Functional Loss - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113664620 chr12:113664623 nonsynonymous SNV 0.095 1 24 hm5C_associated_SNPs_72940 0 0 1 0 1 TPCN1 chr12:113664533 3'AG 113664533 Downstream 91bp
chr12 113664624 113664624 1 + A C rs142521727 113664620 + 113664600 113664640 41 ACCAGAGACTATTTCAAGCCCTGGATATCATATCCTGAGGG ACCAGAGACTATTTCAAGCCCTGGCTATCATATCCTGAGGG < 41bp 0.733234682735537 0.314797560375506 0.24256116 0.14281645 prediction 0.466469365471075 Functional Loss - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113664620 chr12:113664624 synonymous SNV . 0 25 hm5C_associated_SNPs_72941 0 0 1 0 1 TPCN1 chr12:113664533 3'AG 113664533 Downstream 92bp
chr9 5231624 5231624 1 + G A UCEC 5231621 + 5231601 5231641 41 AGAGCTGAGGGGATGTGGTCCCCGATTTGGAAAACACTTGC AGAGCTGAGGGGATGTGGTCCCCAATTTGGAAAACACTTGC < 41bp 0.758164629773695 0.524939642105615 0.027891994 0.070421726 prediction 0.466449975336159 Functional Loss - INSL4 ENSG00000120211 CDS Human protein_coding chr9:5231621 chr9:5231624 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_72946 0 0 0 0 1 INSL4 chr9:5231719 5'GT 5231719 Upstream 96bp
chr11 65480859 65480859 1 + C T UCEC 65480857 + 65480837 65480877 41 AGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCG AGCGGGAAGACCTTGCCAATCCTGGTCCAGATCACACTCCG < 41bp 0.805245053975779 0.5720202602407 0.47817346 0.55777466 prediction 0.466449587470157 Functional Loss - KAT5 ENSG00000172977 CDS Human protein_coding chr11:65480857 chr11:65480859 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_72947 0 0 1 0 1 KAT5 chr11:65480819 3'AG 65480819 Downstream 41bp
chr4 88977264 88977264 1 + G A OV 88977261 + 88977241 88977281 41 TTCAAATTCATCAATTTTAACAGGACCATGAGCCAGCTCTC TTCAAATTCATCAATTTTAACAGAACCATGAGCCAGCTCTC < 41bp 0.744937863250608 0.511718964240029 0.79945093 0.30546826 prediction 0.466437798021158 Functional Loss - PKD2 ENSG00000118762 CDS Human protein_coding chr4:88977261 chr4:88977264 synonymous SNV . 0 24 hm5C_associated_SNPs_72950 0 0 1 0 1 PKD2 chr4:88977238 3'AG 88977238 Downstream 27bp
chr19 42821890 42821890 1 + G A DLBC 42821887 + 42821867 42821907 41 GACCCAGGCCAGGTACTGTACACGTATGAGTCGCCGGCCGG GACCCAGGCCAGGTACTGTACACATATGAGTCGCCGGCCGG < 41bp 0.767770697114533 0.534553383503775 0.25613052 0.14198601 prediction 0.466434627221517 Functional Loss - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42821887 chr19:42821890 synonymous SNV . 0 24 hm5C_associated_SNPs_72952 0 0 0 0 1 TMEM145 chr19:42821861 3'AG 42821861 Downstream 30bp
chr9 132569491 132569491 1 + G A STAD 132569488 + 132569468 132569508 41 ACCAGTTACAGAAGTGGATCCGCGGTAATGTGAGTGCATGT ACCAGTTACAGAAGTGGATCCGCAGTAATGTGAGTGCATGT < 41bp 0.73804359289931 0.504827263458404 0.31547588 0.18841088 prediction 0.466432658881811 Functional Loss - TOR1B ENSG00000136816 CDS Human protein_coding chr9:132569488 chr9:132569491 nonsynonymous SNV 0.529 3 24 hm5C_associated_SNPs_72953 0 0 1 0 1 TOR1B chr9:132569467 3'AG 132569467 Downstream 25bp
chr3 126571530 126571530 1 + G C UCEC 126571526 + 126571506 126571546 41 GCAGAGAGGCAGAGCTAAGACGCCGTGACACCTTCTACAAG GCAGAGAGGCAGAGCTAAGACGCCCTGACACCTTCTACAAG < 41bp 0.843734456232226 0.610518921082099 0.19912603 0.07440141 prediction 0.466431070300253 Functional Loss - CHCHD6 ENSG00000159685 CDS Human protein_coding chr3:126571526 chr3:126571530 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_72954 0 0 1 0 3 CHCHD6 chr3:126571487 3'AG 126571487 Downstream 44bp
chr3 126571530 126571530 1 + G C UCEC 126571526 + 126571506 126571546 41 GCAGAGAGGCAGAGCTAAGACGCCGTGACACCTTCTACAAG GCAGAGAGGCAGAGCTAAGACGCCCTGACACCTTCTACAAG < 41bp 0.843734456232226 0.610518921082099 0.19912603 0.07440141 prediction 0.466431070300253 Functional Loss - CHCHD6 ENSG00000159685 CDS Human protein_coding chr3:126571526 chr3:126571530 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_72954 0 0 1 0 3 CHCHD6 chr3:126571490 3'AG 126571490 Downstream 41bp
chr3 126571530 126571530 1 + G C UCEC 126571526 + 126571506 126571546 41 GCAGAGAGGCAGAGCTAAGACGCCGTGACACCTTCTACAAG GCAGAGAGGCAGAGCTAAGACGCCCTGACACCTTCTACAAG < 41bp 0.843734456232226 0.610518921082099 0.19912603 0.07440141 prediction 0.466431070300253 Functional Loss - CHCHD6 ENSG00000159685 CDS Human protein_coding chr3:126571526 chr3:126571530 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_72954 0 0 1 0 3 CHCHD6 chr3:126571573 5'GT 126571573 Upstream 44bp
chr8 69002929 69002929 1 + G A SKCM 69002926 + 69002906 69002946 41 ATTGCACACGTTACAGCCTGCAGGAAGTACAGGCGGCCAAC ATTGCACACGTTACAGCCTGCAGAAAGTACAGGCGGCCAAC < 41bp 0.739732898455114 0.506522039846152 0.67852783 0.09323484 prediction 0.466421717217925 Functional Loss - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69002926 chr8:69002929 synonymous SNV . 0 24 hm5C_associated_SNPs_72957 0 0 0 0 1 PREX2 chr8:69002950 5'GT 69002950 Upstream 22bp
chr9 104307082 104307082 1 + T C UCEC 104307081 + 104307061 104307101 41 TGGAGGAAGCAGTGCAGGAGCTGAACTCTTTCCTCGCACAG TGGAGGAAGCAGTGCAGGAGCCGAACTCTTTCCTCGCACAG < 41bp 0.733210249035904 0.486123499955768 0.35668305 0.32737702 prediction 0.466420498071809 Functional Loss - RNF20 ENSG00000155827 CDS Human protein_coding chr9:104307081 chr9:104307082 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_72958 0 0 1 0 2 RNF20 chr9:104307049 3'AG 104307049 Downstream 34bp
chr9 104307082 104307082 1 + T C UCEC 104307081 + 104307061 104307101 41 TGGAGGAAGCAGTGCAGGAGCTGAACTCTTTCCTCGCACAG TGGAGGAAGCAGTGCAGGAGCCGAACTCTTTCCTCGCACAG < 41bp 0.733210249035904 0.486123499955768 0.35668305 0.32737702 prediction 0.466420498071809 Functional Loss - RNF20 ENSG00000155827 CDS Human protein_coding chr9:104307081 chr9:104307082 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_72958 0 0 1 0 2 RNF20 chr9:104307167 5'GT 104307167 Upstream 86bp
chr7 50367295 50367295 1 + C T UCEC 50367293 + 50367273 50367313 41 GCGATGAGCCCATGCCGATCCCCGAGGACCTCTCCACCACC GCGATGAGCCCATGCCGATCCCTGAGGACCTCTCCACCACC < 41bp 0.789302652431017 0.556097276221174 0.73512846 0.15163913 prediction 0.466410752419686 Functional Loss - IKZF1 ENSG00000185811 CDS Human protein_coding chr7:50367293 chr7:50367295 synonymous SNV . 0 23 hm5C_associated_SNPs_72960 0 0 1 0 1 IKZF1 chr7:50367353 5'GT 50367353 Upstream 59bp
chr20 31627282 31627282 1 + C T GBM 31627280 + 31627260 31627300 41 CACCCTGGAGATGTTCGCAGCTCGGTGGCGGAGCAAGGCTC CACCCTGGAGATGTTCGCAGCTTGGTGGCGGAGCAAGGCTC < 41bp 0.812624463353903 0.579424321190373 0.36308765 0.26436025 prediction 0.46640028432706 Functional Loss - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31627280 chr20:31627282 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_72962 0 0 0 0 1 BPIFB6 chr20:31627326 5'GT 31627326 Upstream 45bp
chr11 60780934 60780934 1 + G A GBM 60780931 + 60780911 60780951 41 GAAAATAGAGAACAAGGAATCTCGGGAGCTAATGCTCCTCA GAAAATAGAGAACAAGGAATCTCAGGAGCTAATGCTCCTCA < 41bp 0.746443871526711 0.513244474005116 0.16344392 0.08879781 prediction 0.46639879504319 Functional Loss - CD6 ENSG00000013725 CDS Human protein_coding chr11:60780931 chr11:60780934 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_72963 0 0 0 0 1 CD6 chr11:60780895 3'AG 60780895 Downstream 40bp
chr9 135762919 135762919 1 + T C UCEC 135762918 + 135762898 135762938 41 TCCTGGAGAAATGCAAAACCCTCGTTAGCCAAAGCAACGAC TCCTGGAGAAATGCAAAACCCCCGTTAGCCAAAGCAACGAC < 41bp 0.811795723857362 0.578596981029937 0.022396445 0.011568636 prediction 0.466397485654851 Functional Loss - SPACA9 ENSG00000165698 CDS Human protein_coding chr9:135762918 chr9:135762919 nonsynonymous SNV 0.980 4 22 hm5C_associated_SNPs_72964 0 0 0 0 1 SPACA9 chr9:135762958 5'GT 135762958 Upstream 40bp
chr1 119962118 119962118 1 + G A rs4986954 119962115 + 119962095 119962135 41 CATTCCTGAAAAGAGCCTGCCAGGACGTCTCGGTCGTCATC CATTCCTGAAAAGAGCCTGCCAGAACGTCTCGGTCGTCATC < 41bp 0.733196597316715 0.498369311247605 0.6320386 0.24002373 prediction 0.46639319463343 Functional Loss - HSD3B2 ENSG00000203859 CDS Human protein_coding chr1:119962115 chr1:119962118 nonsynonymous SNV 0.316 3 24 hm5C_associated_SNPs_72965 0 0 0 0 2 HSD3B2 chr1:119962041 3'AG 119962041 Downstream 78bp
chr1 119962118 119962118 1 + G A rs4986954 119962115 + 119962095 119962135 41 CATTCCTGAAAAGAGCCTGCCAGGACGTCTCGGTCGTCATC CATTCCTGAAAAGAGCCTGCCAGAACGTCTCGGTCGTCATC < 41bp 0.733196597316715 0.498369311247605 0.6320386 0.24002373 prediction 0.46639319463343 Functional Loss - HSD3B2 ENSG00000203859 CDS Human protein_coding chr1:119962115 chr1:119962118 nonsynonymous SNV 0.316 3 24 hm5C_associated_SNPs_72965 0 0 0 0 2 HSD3B2 chr1:119962205 5'GT 119962205 Upstream 88bp
chr1 119962117 119962117 1 + G T LUAD 119962115 + 119962095 119962135 41 CATTCCTGAAAAGAGCCTGCCAGGACGTCTCGGTCGTCATC CATTCCTGAAAAGAGCCTGCCATGACGTCTCGGTCGTCATC < 41bp 0.733196597316715 0.379762544671898 0.6320386 0.038619608 prediction 0.46639319463343 Functional Loss - HSD3B2 ENSG00000203859 CDS Human protein_coding chr1:119962115 chr1:119962117 nonsynonymous SNV 0.431 4 23 hm5C_associated_SNPs_72966 0 0 0 0 2 HSD3B2 chr1:119962041 3'AG 119962041 Downstream 77bp
chr1 119962117 119962117 1 + G T LUAD 119962115 + 119962095 119962135 41 CATTCCTGAAAAGAGCCTGCCAGGACGTCTCGGTCGTCATC CATTCCTGAAAAGAGCCTGCCATGACGTCTCGGTCGTCATC < 41bp 0.733196597316715 0.379762544671898 0.6320386 0.038619608 prediction 0.46639319463343 Functional Loss - HSD3B2 ENSG00000203859 CDS Human protein_coding chr1:119962115 chr1:119962117 nonsynonymous SNV 0.431 4 23 hm5C_associated_SNPs_72966 0 0 0 0 2 HSD3B2 chr1:119962205 5'GT 119962205 Upstream 89bp
chr3 49059954 49059954 1 + T C KICH 49059953 + 49059933 49059973 41 CCCTGCGCTCTGCTCCCGCACTCGGTGGTGCAGTGGAACGT CCCTGCGCTCTGCTCCCGCACCCGGTGGTGCAGTGGAACGT < 41bp 0.794625504377189 0.561430942123264 0.17699763 0.2655657 prediction 0.46638912450785 Functional Loss - NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49059953 chr3:49059954 nonsynonymous SNV 0.375 2 22 hm5C_associated_SNPs_72967 0 0 1 0 1 NDUFAF3 chr3:49059971 5'GT 49059971 Upstream 18bp
chr19 39219726 39219726 1 + C T UCEC 39219724 + 39219704 39219744 41 AGCCTTCATCGACTTCATGTCGCGGGAGACCACCGACACGG AGCCTTCATCGACTTCATGTCGTGGGAGACCACCGACACGG < 41bp 0.82133649244884 0.588143704006158 0.9100625 0.8934141 prediction 0.466385576885364 Functional Loss - ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39219724 chr19:39219726 nonsynonymous SNV 0.972 3 23 hm5C_associated_SNPs_72968 0 0 1 0 1 ACTN4 chr19:39219794 5'GT 39219794 Upstream 69bp
chr11 119003653 119003653 1 + T C STAD 119003652 + 119003632 119003672 41 TACAGGTGTGATTTTGAGAACTGCACCTTCAGTGCCCGATC TACAGGTGTGATTTTGAGAACCGCACCTTCAGTGCCCGATC < 41bp 0.803123147144521 0.569931298047698 0.1863702 0.22730866 prediction 0.466383698193646 Functional Loss - HINFP ENSG00000172273 CDS Human protein_coding chr11:119003652 chr11:119003653 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_72969 0 0 1 0 2 HINFP chr11:119003574 3'AG 119003574 Downstream 80bp
chr11 119003653 119003653 1 + T C STAD 119003652 + 119003632 119003672 41 TACAGGTGTGATTTTGAGAACTGCACCTTCAGTGCCCGATC TACAGGTGTGATTTTGAGAACCGCACCTTCAGTGCCCGATC < 41bp 0.803123147144521 0.569931298047698 0.1863702 0.22730866 prediction 0.466383698193646 Functional Loss - HINFP ENSG00000172273 CDS Human protein_coding chr11:119003652 chr11:119003653 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_72969 0 0 1 0 2 HINFP chr11:119003712 5'GT 119003712 Upstream 60bp
chr7 36327313 36327313 1 + G T READ 36327310 + 36327290 36327330 41 GCCCTGACCCTCCTGGGGAGCGAGAATCCCAGCAAGAATCA GCCCTGACCCTCCTGGGGAGCGATAATCCCAGCAAGAATCA < 41bp 0.733184427159028 0.334995028214439 0.58639 0.20075014 prediction 0.466368854318055 Functional Loss - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36327310 chr7:36327313 nonsynonymous SNV 0.437 1 24 hm5C_associated_SNPs_72973 0 0 1 0 2 EEPD1 chr7:36327248 3'AG 36327248 Downstream 66bp
chr7 36327313 36327313 1 + G T READ 36327310 + 36327290 36327330 41 GCCCTGACCCTCCTGGGGAGCGAGAATCCCAGCAAGAATCA GCCCTGACCCTCCTGGGGAGCGATAATCCCAGCAAGAATCA < 41bp 0.733184427159028 0.334995028214439 0.58639 0.20075014 prediction 0.466368854318055 Functional Loss - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36327310 chr7:36327313 nonsynonymous SNV 0.437 1 24 hm5C_associated_SNPs_72973 0 0 1 0 2 EEPD1 chr7:36327386 5'GT 36327386 Upstream 74bp
chr17 76166922 76166922 1 + T C STAD 76166921 + 76166901 76166941 41 TTCGCCTTGATCGTGTTCTCCTGCATCTATGGTGAGGGCTA TTCGCCTTGATCGTGTTCTCCCGCATCTATGGTGAGGGCTA < 41bp 0.777036795730401 0.543853303592628 0.51909614 0.39781812 prediction 0.466366984275544 Functional Loss - SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76166921 chr17:76166922 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_72975 0 0 1 0 1 SYNGR2 chr17:76166898 3'AG 76166898 Downstream 25bp
chr2 68882107 68882107 1 + C T COAD 68882105 + 68882085 68882125 41 TGGACGGTGTCCATCCTGATCGCCATCCCTTCCGCCTACTT TGGACGGTGTCCATCCTGATCGTCATCCCTTCCGCCTACTT < 41bp 0.819744943377926 0.586563938157133 0.279203 0.15588146 prediction 0.466362010441586 Functional Loss - PROKR1 ENSG00000169618 CDS Human protein_coding chr2:68882105 chr2:68882107 nonsynonymous SNV 0.970 1 23 hm5C_associated_SNPs_72976 0 0 0 0 1 PROKR1 chr2:68882012 3'AG 68882012 Downstream 96bp
chr11 95552020 95552020 1 + C T SKCM 95552018 + 95551998 95552038 41 TGCAAGAGTTGGAAGCAAAACTCCATGAAGAAGAACAGGAA TGCAAGAGTTGGAAGCAAAACTTCATGAAGAAGAACAGGAA < 41bp 0.866661357374127 0.633482268284384 0.9424534 0.061757118 prediction 0.466358178179486 Functional Loss - CEP57 ENSG00000166037 CDS Human protein_coding chr11:95552018 chr11:95552020 synonymous SNV . 0 23 hm5C_associated_SNPs_72977 0 0 1 0 2 CEP57 chr11:95551991 3'AG 95551991 Downstream 30bp
chr11 95552020 95552020 1 + C T SKCM 95552018 + 95551998 95552038 41 TGCAAGAGTTGGAAGCAAAACTCCATGAAGAAGAACAGGAA TGCAAGAGTTGGAAGCAAAACTTCATGAAGAAGAACAGGAA < 41bp 0.866661357374127 0.633482268284384 0.9424534 0.061757118 prediction 0.466358178179486 Functional Loss - CEP57 ENSG00000166037 CDS Human protein_coding chr11:95552018 chr11:95552020 synonymous SNV . 0 23 hm5C_associated_SNPs_72977 0 0 1 0 2 CEP57 chr11:95552068 5'GT 95552068 Upstream 49bp
chr12 124102337 124102337 1 + G A BLCA 124102334 + 124102314 124102354 41 GCATCGCTGCGGTCGCACAGCTCGCATTGGCCACGGGGGCA GCATCGCTGCGGTCGCACAGCTCACATTGGCCACGGGGGCA < 41bp 0.733178717989292 0.481197286974348 0.10016072 0.059804052 prediction 0.466357435978584 Functional Loss - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124102334 chr12:124102337 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_72978 0 0 1 0 2 DDX55 chr12:124102305 3'AG 124102305 Downstream 33bp
chr12 124102337 124102337 1 + G A BLCA 124102334 + 124102314 124102354 41 GCATCGCTGCGGTCGCACAGCTCGCATTGGCCACGGGGGCA GCATCGCTGCGGTCGCACAGCTCACATTGGCCACGGGGGCA < 41bp 0.733178717989292 0.481197286974348 0.10016072 0.059804052 prediction 0.466357435978584 Functional Loss - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124102334 chr12:124102337 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_72978 0 0 1 0 2 DDX55 chr12:124102419 5'GT 124102419 Upstream 83bp
chr1 28282309 28282309 1 + G A rs74467253 28282306 + 28282286 28282326 41 AGGTGGTCCGGAAGCATCATCGCGTCATAGCAGGGCAGTTC AGGTGGTCCGGAAGCATCATCGCATCATAGCAGGGCAGTTC < 41bp 0.733173020933334 0.479676126347908 0.6625645 0.61883134 prediction 0.466346041866669 Functional Loss - SMPDL3B ENSG00000130768 CDS Human protein_coding chr1:28282306 chr1:28282309 nonsynonymous SNV 0.093 3 24 hm5C_associated_SNPs_72980 0 0 0 0 1 SMPDL3B chr1:28282375 5'GT 28282375 Upstream 67bp
chr6 25972267 25972267 1 + C T BLCA 25972265 + 25972245 25972285 41 TGGGGCTGAAGAGCAATGAACTCAAGAGCCACATCCTGGAA TGGGGCTGAAGAGCAATGAACTTAAGAGCCACATCCTGGAA < 41bp 0.820805606835212 0.587634215873282 0.5347408 0.45930833 prediction 0.466342781923861 Functional Loss - TRIM38 ENSG00000112343 CDS Human protein_coding chr6:25972265 chr6:25972267 synonymous SNV . 0 23 hm5C_associated_SNPs_72981 0 0 1 0 1 TRIM38 chr6:25972327 5'GT 25972327 Upstream 61bp
chr10 111967798 111967798 1 + G C rs147367954 111967797 + 111967777 111967817 41 CAGAACGTGCAGATTCTGCTCGAGGCCGCCAGCTACCTGGA CAGAACGTGCAGATTCTGCTCCAGGCCGCCAGCTACCTGGA < 41bp 0.733169283175185 0.421569645446011 0.90169084 0.85394275 prediction 0.46633856635037 Functional Loss - MXI1 ENSG00000119950 CDS Human protein_coding chr10:111967797 chr10:111967798 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_72982 0 0 1 0 1 MXI1 chr10:111967840 5'GT 111967840 Upstream 43bp
chr16 57597076 57597076 1 + A C BRCA 57597075 + 57597055 57597095 41 AACCTGACCTTGCAGACACCCACCATCCAGTCTCTGGCCTT AACCTGACCTTGCAGACACCCCCCATCCAGTCTCTGGCCTT < 41bp 0.733157979114413 0.469369079646483 0.011888772 0.0031480193 prediction 0.466315958228825 Functional Loss - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57597075 chr16:57597076 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_72984 0 0 0 0 2 ADGRG5 chr16:57597003 3'AG 57597003 Downstream 74bp
chr16 57597076 57597076 1 + A C BRCA 57597075 + 57597055 57597095 41 AACCTGACCTTGCAGACACCCACCATCCAGTCTCTGGCCTT AACCTGACCTTGCAGACACCCCCCATCCAGTCTCTGGCCTT < 41bp 0.733157979114413 0.469369079646483 0.011888772 0.0031480193 prediction 0.466315958228825 Functional Loss - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57597075 chr16:57597076 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_72984 0 0 0 0 2 ADGRG5 chr16:57597159 5'GT 57597159 Upstream 84bp
chr2 106497832 106497832 1 + C T UCEC 106497830 + 106497810 106497850 41 AGCGCGCGGGATGCGTCCCCCACGCCCAGCACGGACGCCGA AGCGCGCGGGATGCGTCCCCCATGCCCAGCACGGACGCCGA < 41bp 0.733149998851277 0.493051667037396 0.29437447 0.32369894 prediction 0.466299997702554 Functional Loss - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106497830 chr2:106497832 nonsynonymous SNV 0.965 2 23 hm5C_associated_SNPs_72986 0 0 0 0 1 NCK2 chr2:106497784 3'AG 106497784 Downstream 49bp
chr10 22016857 22016857 1 + G T READ 22016854 + 22016834 22016874 41 ACCCCGAGGAAGTCTCTCGCCACGGTAAGCGCTATTTACAC ACCCCGAGGAAGTCTCTCGCCACTGTAAGCGCTATTTACAC < 41bp 0.733147349476192 0.373094995124029 0.74113786 0.14433238 prediction 0.466294698952384 Functional Loss - MLLT10 ENSG00000078403 CDS Human protein_coding chr10:22016854 chr10:22016857 nonsynonymous SNV 0.739 5 24 hm5C_associated_SNPs_72990 0 0 1 2 2 MLLT10 chr10:22016785 3'AG 22016785 Downstream 73bp
chr10 22016857 22016857 1 + G T READ 22016854 + 22016834 22016874 41 ACCCCGAGGAAGTCTCTCGCCACGGTAAGCGCTATTTACAC ACCCCGAGGAAGTCTCTCGCCACTGTAAGCGCTATTTACAC < 41bp 0.733147349476192 0.373094995124029 0.74113786 0.14433238 prediction 0.466294698952384 Functional Loss - MLLT10 ENSG00000078403 CDS Human protein_coding chr10:22016854 chr10:22016857 nonsynonymous SNV 0.739 5 24 hm5C_associated_SNPs_72990 0 0 1 2 2 MLLT10 chr10:22016857 5'GT 22016857 Upstream 1bp
chr17 42427660 42427660 1 + G A rs543344476 42427657 + 42427637 42427677 41 TTCGAATGCCCGGACTTCTCCACGTGCTGTGTTATGGTCGA TTCGAATGCCCGGACTTCTCCACATGCTGTGTTATGGTCGA < 41bp 0.733143605525741 0.486243292843272 0.90259403 0.2031546 prediction 0.466287211051483 Functional Loss - GRN ENSG00000030582 CDS Human protein_coding chr17:42427657 chr17:42427660 synonymous SNV . 0 24 hm5C_associated_SNPs_72991 0 0 1 0 2 GRN chr17:42427596 3'AG 42427596 Downstream 65bp
chr17 42427660 42427660 1 + G A rs543344476 42427657 + 42427637 42427677 41 TTCGAATGCCCGGACTTCTCCACGTGCTGTGTTATGGTCGA TTCGAATGCCCGGACTTCTCCACATGCTGTGTTATGGTCGA < 41bp 0.733143605525741 0.486243292843272 0.90259403 0.2031546 prediction 0.466287211051483 Functional Loss - GRN ENSG00000030582 CDS Human protein_coding chr17:42427657 chr17:42427660 synonymous SNV . 0 24 hm5C_associated_SNPs_72991 0 0 1 0 2 GRN chr17:42427708 5'GT 42427708 Upstream 49bp
chr10 134012392 134012392 1 + C T COAD 134012390 + 134012370 134012410 41 GTGTACCGAGCTGTCACCATCGCCAAGCAGGCAAACTGCCC GTGTACCGAGCTGTCACCATCGTCAAGCAGGCAAACTGCCC < 41bp 0.8208586690088 0.587723937663418 0.89801437 0.68040836 prediction 0.466269462690764 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134012390 chr10:134012392 nonsynonymous SNV 0.931 5 23 hm5C_associated_SNPs_72994 0 0 0 0 2 DPYSL4 chr10:134012355 3'AG 134012355 Downstream 38bp
chr10 134012392 134012392 1 + C T COAD 134012390 + 134012370 134012410 41 GTGTACCGAGCTGTCACCATCGCCAAGCAGGCAAACTGCCC GTGTACCGAGCTGTCACCATCGTCAAGCAGGCAAACTGCCC < 41bp 0.8208586690088 0.587723937663418 0.89801437 0.68040836 prediction 0.466269462690764 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134012390 chr10:134012392 nonsynonymous SNV 0.931 5 23 hm5C_associated_SNPs_72994 0 0 0 0 2 DPYSL4 chr10:134012475 5'GT 134012475 Upstream 84bp
chr20 23471944 23471944 1 + A T rs562788814 23471940 + 23471920 23471960 41 GTTTTCATGATCACATCATACAGGACTGAGAAGCAGATAAC GTTTTCATGATCACATCATACAGGTCTGAGAAGCAGATAAC < 41bp 0.758879171846094 0.525744907805373 0.5643733 0.5374048 prediction 0.466268528081441 Functional Loss - CST8 ENSG00000125815 UTR5 Human protein_coding chr20:23471940 chr20:23471944 . . 0 25 hm5C_associated_SNPs_72995 0 0 0 0 1 CST8 chr20:23471979 5'GT 23471979 Upstream 36bp
chr10 20506403 20506403 1 + C T BLCA 20506401 + 20506381 20506421 41 AGAACCAGTGGAAACTTCTTCTCGAACCACCACAACCGTAG AGAACCAGTGGAAACTTCTTCTTGAACCACCACAACCGTAG < 41bp 0.733132187608507 0.436234580180641 0.73541605 0.10982001 prediction 0.466264375217013 Functional Loss - PLXDC2 ENSG00000120594 CDS Human protein_coding chr10:20506401 chr10:20506403 stopgain 0.976 0 23 hm5C_associated_SNPs_72997 0 0 0 0 1 PLXDC2 chr10:20506355 3'AG 20506355 Downstream 49bp
chr6 136476824 136476824 1 + C T SKCM 136476822 + 136476802 136476842 41 GACTGCTGGCTGCAGCAGCACACGATGTGGACCACCCAGGG GACTGCTGGCTGCAGCAGCACATGATGTGGACCACCCAGGG < 41bp 0.849465547571156 0.61633582299138 0.19866207 0.27679688 prediction 0.466259449159552 Functional Loss - PDE7B ENSG00000171408 CDS Human protein_coding chr6:136476822 chr6:136476824 synonymous SNV . 0 23 hm5C_associated_SNPs_72998 0 0 0 0 2 PDE7B chr6:136476765 3'AG 136476765 Downstream 60bp
chr6 136476824 136476824 1 + C T SKCM 136476822 + 136476802 136476842 41 GACTGCTGGCTGCAGCAGCACACGATGTGGACCACCCAGGG GACTGCTGGCTGCAGCAGCACATGATGTGGACCACCCAGGG < 41bp 0.849465547571156 0.61633582299138 0.19866207 0.27679688 prediction 0.466259449159552 Functional Loss - PDE7B ENSG00000171408 CDS Human protein_coding chr6:136476822 chr6:136476824 synonymous SNV . 0 23 hm5C_associated_SNPs_72998 0 0 0 0 2 PDE7B chr6:136476896 5'GT 136476896 Upstream 73bp
chr19 55591557 55591557 1 + G A BRCA 55591554 + 55591534 55591574 41 GCTGTGACGCGGTGATGCCACCCGGCAGGAGCCGCTCGTTG GCTGTGACGCGGTGATGCCACCCAGCAGGAGCCGCTCGTTG < 41bp 0.773413907663 0.540285687174793 0.114875376 0.03236437 prediction 0.466256440976414 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55591554 chr19:55591557 nonsynonymous SNV 0.464 1 24 hm5C_associated_SNPs_72999 0 0 0 0 2 EPS8L1 chr19:55591497 3'AG 55591497 Downstream 61bp
chr19 55591557 55591557 1 + G A BRCA 55591554 + 55591534 55591574 41 GCTGTGACGCGGTGATGCCACCCGGCAGGAGCCGCTCGTTG GCTGTGACGCGGTGATGCCACCCAGCAGGAGCCGCTCGTTG < 41bp 0.773413907663 0.540285687174793 0.114875376 0.03236437 prediction 0.466256440976414 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55591554 chr19:55591557 nonsynonymous SNV 0.464 1 24 hm5C_associated_SNPs_72999 0 0 0 0 2 EPS8L1 chr19:55591646 5'GT 55591646 Upstream 90bp
chrX 152991572 152991572 1 + C T UCEC 152991570 + 152991550 152991590 41 GGGGAGCTGCGCTACATGCACTCGCGTGTGGTGGCCAACTC GGGGAGCTGCGCTACATGCACTTGCGTGTGGTGGCCAACTC < 41bp 0.74934461485683 0.516216429454249 0.33814213 0.22735775 prediction 0.466256370805163 Functional Loss - ABCD1 ENSG00000101986 CDS Human protein_coding chrX:152991570 chrX:152991572 nonsynonymous SNV 0.842 5 23 hm5C_associated_SNPs_73000 0 0 0 0 1 ABCD1 chrX:152991621 5'GT 152991621 Upstream 50bp
chr11 71507343 71507343 1 + G A rs149332957 71507340 + 71507320 71507360 41 CTCCCACACCATGCGGGGAACTAGGGCAGAGGCCGGTGAGA CTCCCACACCATGCGGGGAACTAAGGCAGAGGCCGGTGAGA < 41bp 0.735907752426999 0.502782387292597 0.90511084 0.9035468 prediction 0.466250730268803 Functional Loss - ALG1L9P ENSG00000248671 ncRNA_intronic Human processed_transcript chr11:71507340 chr11:71507343 . . 0 24 hm5C_associated_SNPs_73001 0 0 0 0 1 ALG1L9P chr11:71507354 5'GT 71507354 Upstream 12bp
chr17 38609374 38609374 1 + C T UCEC 38609372 + 38609352 38609392 41 GATGAAGGTCAATGGGGCGCCCCGGGAGGATGCCCGGCCTG GATGAAGGTCAATGGGGCGCCCTGGGAGGATGCCCGGCCTG < 41bp 0.79129971364259 0.558177235221011 0.8512845 0.87408775 prediction 0.466244956843159 Functional Loss - IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38609372 chr17:38609374 nonsynonymous SNV 0.795 2 23 hm5C_associated_SNPs_73002 0 0 1 0 1 IGFBP4 chr17:38609394 5'GT 38609394 Upstream 21bp
chr1 17575701 17575701 1 + G A LUAD 17575698 + 17575678 17575718 41 AGCGCGGTGTGTGTGGCTGGCGTGGAGACCCTCGTGGACAT AGCGCGGTGTGTGTGGCTGGCGTAGAGACCCTCGTGGACAT < 41bp 0.733110107775521 0.489112298759222 0.66443795 0.2809714 prediction 0.466220215551041 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17575698 chr1:17575701 synonymous SNV . 0 24 hm5C_associated_SNPs_73008 0 0 0 0 1 PADI3 chr1:17575724 5'GT 17575724 Upstream 24bp
chr3 16237414 16237414 1 + G A rs543264667 16237411 + 16237391 16237431 41 TTCCTGAAGGAGATCATCCTCGTGGACGACCTCAGCCAGCA TTCCTGAAGGAGATCATCCTCGTAGACGACCTCAGCCAGCA < 41bp 0.758696391877639 0.525591287208853 0.8979845 0.7045605 prediction 0.466210209337573 Functional Loss - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16237411 chr3:16237414 synonymous SNV . 0 24 hm5C_associated_SNPs_73010 0 0 0 0 1 GALNT15 chr3:16237433 5'GT 16237433 Upstream 20bp
chr15 23811155 23811155 1 + C T OV 23811153 + 23811133 23811173 41 CAGAGGAGGCCTGAGGCCTGCCCCAGCCTCAGGAGGAGGAG CAGAGGAGGCCTGAGGCCTGCCTCAGCCTCAGGAGGAGGAG < 41bp 0.760161519398257 0.527057375420593 0.16768569 0.06323677 prediction 0.466208287955328 Functional Loss - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23811153 chr15:23811155 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_73012 0 0 0 0 1 MKRN3 chr15:23811234 5'GT 23811234 Upstream 80bp
chr6 159173011 159173011 1 + G A KICH 159173008 + 159172988 159173028 41 AGATCCTCCCAGGGAAAGCGCAAGACTGGAGTCCAAAGGAA AGATCCTCCCAGGGAAAGCGCAAAACTGGAGTCCAAAGGAA < 41bp 0.733102881031904 0.484001184807948 0.24240124 0.13395956 prediction 0.466205762063807 Functional Loss - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159173008 chr6:159173011 synonymous SNV . 0 24 hm5C_associated_SNPs_73014 0 0 0 0 2 SYTL3 chr6:159172960 3'AG 159172960 Downstream 52bp
chr6 159173011 159173011 1 + G A KICH 159173008 + 159172988 159173028 41 AGATCCTCCCAGGGAAAGCGCAAGACTGGAGTCCAAAGGAA AGATCCTCCCAGGGAAAGCGCAAAACTGGAGTCCAAAGGAA < 41bp 0.733102881031904 0.484001184807948 0.24240124 0.13395956 prediction 0.466205762063807 Functional Loss - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159173008 chr6:159173011 synonymous SNV . 0 24 hm5C_associated_SNPs_73014 0 0 0 0 2 SYTL3 chr6:159173062 5'GT 159173062 Upstream 52bp
chr11 375665 375665 1 + G A STAD 375662 + 375642 375682 41 AGTCAGCCTTGAAGATGGACCACGTGGCGCACGTCCCCCAG AGTCAGCCTTGAAGATGGACCACATGGCGCACGTCCCCCAG < 41bp 0.766263057385113 0.533161189423919 0.21960121 0.08065355 prediction 0.466203735922389 Functional Loss - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:375662 chr11:375665 nonsynonymous SNV 0.975 3 24 hm5C_associated_SNPs_73015 0 0 1 0 1 B4GALNT4 chr11:375639 3'AG 375639 Downstream 27bp
chr16 72143392 72143392 1 + G A STAD 72143389 + 72143369 72143409 41 CCATGTTCTATAGCGTGAAACAGGCGGGCAAGTCACGGCAG CCATGTTCTATAGCGTGAAACAGACGGGCAAGTCACGGCAG < 41bp 0.787208637601669 0.554114063132828 0.40697283 0.2581586 prediction 0.466189148937682 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72143389 chr16:72143392 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_73018 0 0 1 0 2 DHX38 chr16:72143314 3'AG 72143314 Downstream 79bp
chr16 72143392 72143392 1 + G A STAD 72143389 + 72143369 72143409 41 CCATGTTCTATAGCGTGAAACAGGCGGGCAAGTCACGGCAG CCATGTTCTATAGCGTGAAACAGACGGGCAAGTCACGGCAG < 41bp 0.787208637601669 0.554114063132828 0.40697283 0.2581586 prediction 0.466189148937682 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72143389 chr16:72143392 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_73018 0 0 1 0 2 DHX38 chr16:72143409 5'GT 72143409 Upstream 18bp
chr9 127636024 127636024 1 + C T UCEC 127636022 + 127636002 127636042 41 TTGCGGAACTCTCCCGTCAACACCAAGAATCAAGCTGTGAA TTGCGGAACTCTCCCGTCAACATCAAGAATCAAGCTGTGAA < 41bp 0.843528362605366 0.61043395043225 0.14821038 0.04783547 prediction 0.466188824346233 Functional Loss - ARPC5L ENSG00000136950 CDS Human protein_coding chr9:127636022 chr9:127636024 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_73019 0 0 1 0 1 ARPC5L chr9:127636043 5'GT 127636043 Upstream 20bp
chr7 1026366 1026366 1 + G A BLCA 1026363 + 1026343 1026383 41 TCTGAGGACCCTCCTGGAGGCGCGGAGGCCCCACGTGTGCC TCTGAGGACCCTCCTGGAGGCGCAGAGGCCCCACGTGTGCC < 41bp 0.768637393864346 0.53554944233261 0.8016205 0.6324315 prediction 0.466175903063472 Functional Loss - CYP2W1 ENSG00000073067 CDS Human protein_coding chr7:1026363 chr7:1026366 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_73023 0 0 1 0 1 CYP2W1 chr7:1026433 5'GT 1026433 Upstream 68bp
chr20 1281338 1281338 1 + G T UCEC 1281336 + 1281316 1281356 41 AAGCCCGGCTGAAGGACACACAGGACCGGCTCCAGGACCGG AAGCCCGGCTGAAGGACACACATGACCGGCTCCAGGACCGG < 41bp 0.904243678025553 0.671157894915915 0.8171196 0.19736692 prediction 0.466171566219275 Functional Loss - SNPH ENSG00000101298 CDS Human protein_coding chr20:1281336 chr20:1281338 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_73024 0 0 0 0 1 SNPH chr20:1281355 5'GT 1281355 Upstream 18bp
chr1 11082258 11082258 1 + C T rs528733699 11082256 + 11082236 11082276 41 TATCCAATGCCGAACCTAAGCACAATAGCAATAGACAGTTA TATCCAATGCCGAACCTAAGCATAATAGCAATAGACAGTTA < 41bp 0.820010781569992 0.586928442962725 0.046511084 0.036676794 prediction 0.466164677214532 Functional Loss - TARDBP ENSG00000120948 CDS Human protein_coding chr1:11082256 chr1:11082258 synonymous SNV . 0 23 hm5C_associated_SNPs_73025 0 0 1 0 1 TARDBP chr1:11082181 3'AG 11082181 Downstream 78bp
chrX 37913577 37913577 1 + G T LUAD 37913574 + 37913554 37913594 41 AACCTGGGCCTAATCTTTGACCGGGGAGACCCTTGTCAGGC AACCTGGGCCTAATCTTTGACCGTGGAGACCCTTGTCAGGC < 41bp 0.733081489567172 0.330803367417041 0.93486834 0.2625321 prediction 0.466162979134344 Functional Loss - SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37913574 chrX:37913577 synonymous SNV . 0 24 hm5C_associated_SNPs_73026 0 0 0 0 1 SYTL5 chrX:37913675 5'GT 37913675 Upstream 99bp
chr5 162939126 162939126 1 + G T LUAD 162939124 + 162939104 162939144 41 CATGCAGTTGGCTGTGGTTTCAGAAGAGCAAGACCAAAATT CATGCAGTTGGCTGTGGTTTCATAAGAGCAAGACCAAAATT < 41bp 0.885411609904626 0.652333419044852 0.3650195 0.12335235 prediction 0.466156381719549 Functional Loss - MAT2B ENSG00000038274 CDS Human protein_coding chr5:162939124 chr5:162939126 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_73027 0 0 1 0 1 MAT2B chr5:162939202 5'GT 162939202 Upstream 77bp
chr21 48083366 48083366 1 + C T CESC 48083364 + 48083344 48083384 41 GTCCATACAGGAGACGTGGTCACGGGTTCAGTTGTGTTGCA GTCCATACAGGAGACGTGGTCATGGGTTCAGTTGTGTTGCA < 41bp 0.791078588047139 0.558007198019271 0.88066375 0.88328063 prediction 0.466142780055736 Functional Loss - PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48083364 chr21:48083366 nonsynonymous SNV 0.238 1 23 hm5C_associated_SNPs_73029 0 0 1 0 1 PRMT2 chr21:48083295 3'AG 48083295 Downstream 72bp
chr17 72350673 72350673 1 + G A rs536473423 72350670 + 72350650 72350690 41 AAAGAGAAGGAAGCGGAGGTCCCGATCCTTCGAGGTCACCG AAAGAGAAGGAAGCGGAGGTCCCAATCCTTCGAGGTCACCG < 41bp 0.735821110053497 0.502754833609644 0.23469955 0.24309874 prediction 0.466132552887706 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72350670 chr17:72350673 nonsynonymous SNV 0.988 0 24 hm5C_associated_SNPs_73035 0 0 0 0 1 KIF19 chr17:72350698 5'GT 72350698 Upstream 26bp
chr4 184585165 184585165 1 + G A rs141909783 184585162 + 184585142 184585182 41 GTGCAAATCGGAGAGCTGATCGAGTACCAATTTCTTTCAAG GTGCAAATCGGAGAGCTGATCGAATACCAATTTCTTTCAAG < 41bp 0.743807158829493 0.5107412869467 0.87976694 0.43830743 prediction 0.466131743765586 Functional Loss - TRAPPC11 ENSG00000168538 CDS Human protein_coding chr4:184585162 chr4:184585165 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_73036 0 0 0 0 2 TRAPPC11 chr4:184585182 5'GT 184585182 Upstream 18bp
chr4 184585165 184585165 1 + G A rs141909783 184585162 + 184585142 184585182 41 GTGCAAATCGGAGAGCTGATCGAGTACCAATTTCTTTCAAG GTGCAAATCGGAGAGCTGATCGAATACCAATTTCTTTCAAG < 41bp 0.743807158829493 0.5107412869467 0.87976694 0.43830743 prediction 0.466131743765586 Functional Loss - TRAPPC11 ENSG00000168538 CDS Human protein_coding chr4:184585162 chr4:184585165 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_73036 0 0 0 0 2 TRAPPC11 chr4:184585224 5'GT 184585224 Upstream 60bp
chr20 21689209 21689209 1 + G C LUAD 21689205 + 21689185 21689225 41 CTCTCCTGCAGGGGCCCTGGCTGGGAGCGAAGGCACCGCTT CTCTCCTGCAGGGGCCCTGGCTGGCAGCGAAGGCACCGCTT < 41bp 0.866942128431117 0.633880216531652 0.6169754 0.18571466 prediction 0.46612382379893 Functional Loss - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21689205 chr20:21689209 synonymous SNV . 0 25 hm5C_associated_SNPs_73037 0 0 0 0 1 PAX1 chr20:21689196 3'AG 21689196 Downstream 14bp
chr21 45817713 45817713 1 + G A rs45622331 45817710 + 45817690 45817730 41 GAGGAGGAGGACACGGACAGCTCGGAGGAGATGCTGGCGCT GAGGAGGAGGACACGGACAGCTCAGAGGAGATGCTGGCGCT < 41bp 0.741315925076891 0.508255495119132 0.36390448 0.3785353 prediction 0.466120859915519 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45817710 chr21:45817713 synonymous SNV . 0 24 hm5C_associated_SNPs_73038 0 0 0 0 2 TRPM2 chr21:45817630 3'AG 45817630 Downstream 84bp
chr21 45817713 45817713 1 + G A rs45622331 45817710 + 45817690 45817730 41 GAGGAGGAGGACACGGACAGCTCGGAGGAGATGCTGGCGCT GAGGAGGAGGACACGGACAGCTCAGAGGAGATGCTGGCGCT < 41bp 0.741315925076891 0.508255495119132 0.36390448 0.3785353 prediction 0.466120859915519 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45817710 chr21:45817713 synonymous SNV . 0 24 hm5C_associated_SNPs_73038 0 0 0 0 2 TRPM2 chr21:45817759 5'GT 45817759 Upstream 47bp
chr20 61937318 61937318 1 + G A rs145631155 61937315 + 61937295 61937335 41 CCGGAGCCCACCCCCTCCCACACGGGGAGCCCAGACCCTGA CCGGAGCCCACCCCCTCCCACACAGGGAGCCCAGACCCTGA < 41bp 0.778570008823105 0.545511535276776 0.795219 0.20468497 prediction 0.466116947092658 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61937315 chr20:61937318 synonymous SNV . 0 24 hm5C_associated_SNPs_73040 0 0 0 0 2 COL20A1 chr20:61937233 3'AG 61937233 Downstream 86bp
chr20 61937318 61937318 1 + G A rs145631155 61937315 + 61937295 61937335 41 CCGGAGCCCACCCCCTCCCACACGGGGAGCCCAGACCCTGA CCGGAGCCCACCCCCTCCCACACAGGGAGCCCAGACCCTGA < 41bp 0.778570008823105 0.545511535276776 0.795219 0.20468497 prediction 0.466116947092658 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61937315 chr20:61937318 synonymous SNV . 0 24 hm5C_associated_SNPs_73040 0 0 0 0 2 COL20A1 chr20:61937391 5'GT 61937391 Upstream 74bp
chr12 6952860 6952860 1 + G A HNSC 6952857 + 6952837 6952877 41 GTGACCAGCTCGGGGGACACCACGTGGTGAGGCTGAACATT GTGACCAGCTCGGGGGACACCACATGGTGAGGCTGAACATT < 41bp 0.75431048120982 0.521253644087471 0.22559392 0.3629635 prediction 0.466113674244699 Functional Loss - GNB3;GNB3 ENSG00000111664;ENSG00000111664 exonic;splicing Human protein_coding chr12:6952857 chr12:6952860 synonymous SNV 0.980 0 24 hm5C_associated_SNPs_73042 0 0 0 0 2 GNB3 chr12:6952796 3'AG 6952796 Downstream 65bp
chr12 6952860 6952860 1 + G A HNSC 6952857 + 6952837 6952877 41 GTGACCAGCTCGGGGGACACCACGTGGTGAGGCTGAACATT GTGACCAGCTCGGGGGACACCACATGGTGAGGCTGAACATT < 41bp 0.75431048120982 0.521253644087471 0.22559392 0.3629635 prediction 0.466113674244699 Functional Loss - GNB3;GNB3 ENSG00000111664;ENSG00000111664 exonic;splicing Human protein_coding chr12:6952857 chr12:6952860 synonymous SNV 0.980 0 24 hm5C_associated_SNPs_73042 0 0 0 0 2 GNB3 chr12:6952862 5'GT 6952862 Upstream 3bp
chr19 16337310 16337310 1 + G A UCEC 16337307 + 16337287 16337327 41 GAGTCTTCCTCTCGGGCATGCCCGAGCTGCGCCTGGGCCTC GAGTCTTCCTCTCGGGCATGCCCAAGCTGCGCCTGGGCCTC < 41bp 0.73304856735542 0.481007781809827 0.2574051 0.1683217 prediction 0.46609713471084 Functional Loss - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16337307 chr19:16337310 nonsynonymous SNV 0.702 4 24 hm5C_associated_SNPs_73043 0 0 1 0 2 AP1M1 chr19:16337232 3'AG 16337232 Downstream 79bp
chr19 16337310 16337310 1 + G A UCEC 16337307 + 16337287 16337327 41 GAGTCTTCCTCTCGGGCATGCCCGAGCTGCGCCTGGGCCTC GAGTCTTCCTCTCGGGCATGCCCAAGCTGCGCCTGGGCCTC < 41bp 0.73304856735542 0.481007781809827 0.2574051 0.1683217 prediction 0.46609713471084 Functional Loss - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16337307 chr19:16337310 nonsynonymous SNV 0.702 4 24 hm5C_associated_SNPs_73043 0 0 1 0 2 AP1M1 chr19:16337358 5'GT 16337358 Upstream 49bp
chr14 76107397 76107397 1 + T C COAD 76107396 + 76107376 76107416 41 CTCCGGCCTCCTCAACATATCTGCACAGGTAGAGCTCGTAT CTCCGGCCTCCTCAACATATCCGCACAGGTAGAGCTCGTAT < 41bp 0.7330482578413 0.469609771505405 0.1832701 0.103684485 prediction 0.466096515682599 Functional Loss - FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76107396 chr14:76107397 synonymous SNV . 0 22 hm5C_associated_SNPs_73044 0 0 0 0 2 FLVCR2 chr14:76107298 3'AG 76107298 Downstream 100bp
chr14 76107397 76107397 1 + T C COAD 76107396 + 76107376 76107416 41 CTCCGGCCTCCTCAACATATCTGCACAGGTAGAGCTCGTAT CTCCGGCCTCCTCAACATATCCGCACAGGTAGAGCTCGTAT < 41bp 0.7330482578413 0.469609771505405 0.1832701 0.103684485 prediction 0.466096515682599 Functional Loss - FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76107396 chr14:76107397 synonymous SNV . 0 22 hm5C_associated_SNPs_73044 0 0 0 0 2 FLVCR2 chr14:76107403 5'GT 76107403 Upstream 7bp
chr5 138979986 138979986 1 + A T ESCA 138979982 + 138979962 138980002 41 GAATGATCTGGCACGGGACCCTCCAGCACAGTGTTCAGCAG GAATGATCTGGCACGGGACCCTCCTGCACAGTGTTCAGCAG < 41bp 0.756204638423533 0.523157669395345 0.94369245 0.065910816 prediction 0.466093938056375 Functional Loss - UBE2D2 ENSG00000131508 CDS Human protein_coding chr5:138979982 chr5:138979986 synonymous SNV . 0 25 hm5C_associated_SNPs_73045 0 0 1 0 2 UBE2D2 chr5:138979957 3'AG 138979957 Downstream 30bp
chr5 138979986 138979986 1 + A T ESCA 138979982 + 138979962 138980002 41 GAATGATCTGGCACGGGACCCTCCAGCACAGTGTTCAGCAG GAATGATCTGGCACGGGACCCTCCTGCACAGTGTTCAGCAG < 41bp 0.756204638423533 0.523157669395345 0.94369245 0.065910816 prediction 0.466093938056375 Functional Loss - UBE2D2 ENSG00000131508 CDS Human protein_coding chr5:138979982 chr5:138979986 synonymous SNV . 0 25 hm5C_associated_SNPs_73045 0 0 1 0 2 UBE2D2 chr5:138980020 5'GT 138980020 Upstream 35bp
chr2 239002507 239002507 1 + G A BLCA 239002504 + 239002484 239002524 41 TTGTGTGTCTGCCCCCAGGCCGCGGAGCTGGTGACCCAGAA TTGTGTGTCTGCCCCCAGGCCGCAGAGCTGGTGACCCAGAA < 41bp 0.778162655953501 0.545119829532932 0.8342993 0.4193412 prediction 0.466085652841137 Functional Loss - SCLY ENSG00000132330 CDS Human protein_coding chr2:239002504 chr2:239002507 synonymous SNV . 0 24 hm5C_associated_SNPs_73047 0 0 1 0 2 SCLY chr2:239002502 3'AG 239002502 Downstream 6bp
chr2 239002507 239002507 1 + G A BLCA 239002504 + 239002484 239002524 41 TTGTGTGTCTGCCCCCAGGCCGCGGAGCTGGTGACCCAGAA TTGTGTGTCTGCCCCCAGGCCGCAGAGCTGGTGACCCAGAA < 41bp 0.778162655953501 0.545119829532932 0.8342993 0.4193412 prediction 0.466085652841137 Functional Loss - SCLY ENSG00000132330 CDS Human protein_coding chr2:239002504 chr2:239002507 synonymous SNV . 0 24 hm5C_associated_SNPs_73047 0 0 1 0 2 SCLY chr2:239002585 5'GT 239002585 Upstream 79bp
chr16 68714912 68714912 1 + G T rs148535251 68714909 + 68714889 68714929 41 CTGACCATCCAGGCCACAGACATGGATGGGGACGGCTCCAC CTGACCATCCAGGCCACAGACATTGATGGGGACGGCTCCAC < 41bp 0.733039061555116 0.323852745069011 0.3221357 0.35865366 prediction 0.466078123110232 Functional Loss - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68714909 chr16:68714912 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_73050 0 0 0 0 2 CDH3 chr16:68714871 3'AG 68714871 Downstream 42bp
chr16 68714912 68714912 1 + G T rs148535251 68714909 + 68714889 68714929 41 CTGACCATCCAGGCCACAGACATGGATGGGGACGGCTCCAC CTGACCATCCAGGCCACAGACATTGATGGGGACGGCTCCAC < 41bp 0.733039061555116 0.323852745069011 0.3221357 0.35865366 prediction 0.466078123110232 Functional Loss - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68714909 chr16:68714912 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_73050 0 0 0 0 2 CDH3 chr16:68714999 5'GT 68714999 Upstream 88bp
chr1 111783981 111783981 1 + G A rs7542034 111783978 + 111783958 111783998 41 TTCCTGAAAGGAGCCAAGATCACGCGGCTCCAGGATCAACA TTCCTGAAAGGAGCCAAGATCACACGGCTCCAGGATCAACA < 41bp 0.7330381670126 0.488712434839461 0.81057346 0.09701085 prediction 0.466076334025201 Functional Loss - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111783978 chr1:111783981 synonymous SNV . 0 24 hm5C_associated_SNPs_73052 0 0 0 0 2 CHI3L2 chr1:111783949 3'AG 111783949 Downstream 33bp
chr1 111783981 111783981 1 + G A rs7542034 111783978 + 111783958 111783998 41 TTCCTGAAAGGAGCCAAGATCACGCGGCTCCAGGATCAACA TTCCTGAAAGGAGCCAAGATCACACGGCTCCAGGATCAACA < 41bp 0.7330381670126 0.488712434839461 0.81057346 0.09701085 prediction 0.466076334025201 Functional Loss - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111783978 chr1:111783981 synonymous SNV . 0 24 hm5C_associated_SNPs_73052 0 0 0 0 2 CHI3L2 chr1:111784065 5'GT 111784065 Upstream 85bp
chr9 95572091 95572091 1 + G T ACC 95572089 + 95572069 95572109 41 TGCCATCAAGGGCGACGCCGCGGAGGTGGAGCACTGCCTGA TGCCATCAAGGGCGACGCCGCGTAGGTGGAGCACTGCCTGA < 41bp 0.900788984985309 0.667760739313635 0.9101198 0.383581 prediction 0.466056491343347 Functional Loss - ANKRD19P ENSG00000187984 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:95572089 chr9:95572091 . . 0 23 hm5C_associated_SNPs_73055 0 0 0 0 1 ANKRD19P chr9:95572152 5'GT 95572152 Upstream 62bp
chr10 114799852 114799852 1 + G T UCEC 114799849 + 114799829 114799869 41 CTCCAGAGTAGACAAGCCCTCAAGGATGCCCGGTCCCCATC CTCCAGAGTAGACAAGCCCTCAATGATGCCCGGTCCCCATC < 41bp 0.832959722561858 0.599937832121072 0.91922665 0.22589937 prediction 0.466043780881572 Functional Loss - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114799849 chr10:114799852 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_73057 0 0 1 0 2 TCF7L2 chr10:114799784 3'AG 114799784 Downstream 69bp
chr10 114799852 114799852 1 + G T UCEC 114799849 + 114799829 114799869 41 CTCCAGAGTAGACAAGCCCTCAAGGATGCCCGGTCCCCATC CTCCAGAGTAGACAAGCCCTCAATGATGCCCGGTCCCCATC < 41bp 0.832959722561858 0.599937832121072 0.91922665 0.22589937 prediction 0.466043780881572 Functional Loss - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114799849 chr10:114799852 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_73057 0 0 1 0 2 TCF7L2 chr10:114799885 5'GT 114799885 Upstream 34bp
chr11 59540740 59540740 1 + G A UCEC 59540737 + 59540717 59540757 41 GTTGAGATTGCTATCGACAACACGGCTTTTATGGACGAGTT GTTGAGATTGCTATCGACAACACAGCTTTTATGGACGAGTT < 41bp 0.741389840713376 0.5083787132984 0.005301386 0.0071067214 prediction 0.466022254829952 Functional Loss - STX3 ENSG00000166900 CDS Human protein_coding chr11:59540737 chr11:59540740 synonymous SNV . 0 24 hm5C_associated_SNPs_73064 0 0 1 0 2 STX3 chr11:59540684 3'AG 59540684 Downstream 57bp
chr11 59540740 59540740 1 + G A UCEC 59540737 + 59540717 59540757 41 GTTGAGATTGCTATCGACAACACGGCTTTTATGGACGAGTT GTTGAGATTGCTATCGACAACACAGCTTTTATGGACGAGTT < 41bp 0.741389840713376 0.5083787132984 0.005301386 0.0071067214 prediction 0.466022254829952 Functional Loss - STX3 ENSG00000166900 CDS Human protein_coding chr11:59540737 chr11:59540740 synonymous SNV . 0 24 hm5C_associated_SNPs_73064 0 0 1 0 2 STX3 chr11:59540767 5'GT 59540767 Upstream 28bp
chr8 56866484 56866484 1 + G A BLCA 56866481 + 56866461 56866501 41 TAAAGATGCCTGGGAGATCCCCCGGGAGTCCATCAAGTTGG TAAAGATGCCTGGGAGATCCCCCAGGAGTCCATCAAGTTGG < 41bp 0.76784893642044 0.534838041164386 0.15688372 0.02421999 prediction 0.466021790512108 Functional Loss - LYN ENSG00000254087 CDS Human protein_coding chr8:56866481 chr8:56866484 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_73065 0 0 1 0 2 LYN chr8:56866391 3'AG 56866391 Downstream 94bp
chr8 56866484 56866484 1 + G A BLCA 56866481 + 56866461 56866501 41 TAAAGATGCCTGGGAGATCCCCCGGGAGTCCATCAAGTTGG TAAAGATGCCTGGGAGATCCCCCAGGAGTCCATCAAGTTGG < 41bp 0.76784893642044 0.534838041164386 0.15688372 0.02421999 prediction 0.466021790512108 Functional Loss - LYN ENSG00000254087 CDS Human protein_coding chr8:56866481 chr8:56866484 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_73065 0 0 1 0 2 LYN chr8:56866543 5'GT 56866543 Upstream 60bp
chr1 109707200 109707200 1 + C T rs147894230 109707198 + 109707178 109707218 41 GCGCTGAGGGCCGCTACTCCCTCGGCACAGGCATTCGGTTT GCGCTGAGGGCCGCTACTCCCTTGGCACAGGCATTCGGTTT < 41bp 0.830221755030971 0.597211342650759 0.08248493 0.057962805 prediction 0.466020824760424 Functional Loss - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109707198 chr1:109707200 synonymous SNV . 0 23 hm5C_associated_SNPs_73066 0 0 0 0 1 KIAA1324 chr1:109707121 3'AG 109707121 Downstream 80bp
chr19 3730644 3730644 1 + C T UCEC 3730642 + 3730622 3730662 41 GTCCGGCTTTAAGCGGCTGCCACGGCAGGACGTGCAGATGA GTCCGGCTTTAAGCGGCTGCCATGGCAGGACGTGCAGATGA < 41bp 0.81109066354641 0.57808524142711 0.23452997 0.46372697 prediction 0.4660108442386 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3730642 chr19:3730644 nonsynonymous SNV 0.006 2 23 hm5C_associated_SNPs_73069 0 0 0 0 1 TJP3 chr19:3730704 5'GT 3730704 Upstream 61bp
chr11 124745497 124745497 1 + G A LUAD 124745494 + 124745474 124745514 41 CCACAGGGAGTGGCGGTGGCCTTGGGGGGTGATGGCAACAG CCACAGGGAGTGGCGGTGGCCTTAGGGGGTGATGGCAACAG < 41bp 0.733002750570995 0.499670977263947 0.7483718 0.74279034 prediction 0.466005501141989 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124745494 chr11:124745497 synonymous SNV . 0 24 hm5C_associated_SNPs_73070 0 0 0 0 2 ROBO3 chr11:124745460 3'AG 124745460 Downstream 38bp
chr11 124745497 124745497 1 + G A LUAD 124745494 + 124745474 124745514 41 CCACAGGGAGTGGCGGTGGCCTTGGGGGGTGATGGCAACAG CCACAGGGAGTGGCGGTGGCCTTAGGGGGTGATGGCAACAG < 41bp 0.733002750570995 0.499670977263947 0.7483718 0.74279034 prediction 0.466005501141989 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124745494 chr11:124745497 synonymous SNV . 0 24 hm5C_associated_SNPs_73070 0 0 0 0 2 ROBO3 chr11:124745581 5'GT 124745581 Upstream 85bp
chr4 17585203 17585203 1 + C T CESC 17585201 + 17585181 17585221 41 CGGAGGGAGCGGTGCTTGGTCTCTATGAATACGATGACCTA CGGAGGGAGCGGTGCTTGGTCTTTATGAATACGATGACCTA < 41bp 0.850422530495774 0.617421979550733 0.9035154 0.073764354 prediction 0.466001101890083 Functional Loss - LAP3 ENSG00000002549 CDS Human protein_coding chr4:17585201 chr4:17585203 synonymous SNV . 0 23 hm5C_associated_SNPs_73071 0 0 1 0 2 LAP3 chr4:17585106 3'AG 17585106 Downstream 98bp
chr4 17585203 17585203 1 + C T CESC 17585201 + 17585181 17585221 41 CGGAGGGAGCGGTGCTTGGTCTCTATGAATACGATGACCTA CGGAGGGAGCGGTGCTTGGTCTTTATGAATACGATGACCTA < 41bp 0.850422530495774 0.617421979550733 0.9035154 0.073764354 prediction 0.466001101890083 Functional Loss - LAP3 ENSG00000002549 CDS Human protein_coding chr4:17585201 chr4:17585203 synonymous SNV . 0 23 hm5C_associated_SNPs_73071 0 0 1 0 2 LAP3 chr4:17585265 5'GT 17585265 Upstream 63bp
chr19 49633831 49633831 1 + C T SKCM 49633829 + 49633809 49633849 41 GGCAAGGCAGAGGAAGCCAACTCCAAGCTGCAGCGCGACCT GGCAAGGCAGAGGAAGCCAACTTCAAGCTGCAGCGCGACCT < 41bp 0.821964317220391 0.588967860112299 0.9378737 0.34240386 prediction 0.465992914216184 Functional Loss - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49633829 chr19:49633831 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_73073 0 0 1 0 1 PPFIA3 chr19:49633856 5'GT 49633856 Upstream 26bp
chr6 43411736 43411736 1 + G A LUAD 43411733 + 43411713 43411753 41 AAGCCTGGGCTGAGAATGGACAAGAGTCTGACTCAGGTATG AAGCCTGGGCTGAGAATGGACAAAAGTCTGACTCAGGTATG < 41bp 0.773018280693515 0.540025983711619 0.7508707 0.42463943 prediction 0.465984593963792 Functional Loss - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43411733 chr6:43411736 nonsynonymous SNV 0.980 1 24 hm5C_associated_SNPs_73078 0 0 1 0 2 ABCC10 chr6:43411671 3'AG 43411671 Downstream 66bp
chr6 43411736 43411736 1 + G A LUAD 43411733 + 43411713 43411753 41 AAGCCTGGGCTGAGAATGGACAAGAGTCTGACTCAGGTATG AAGCCTGGGCTGAGAATGGACAAAAGTCTGACTCAGGTATG < 41bp 0.773018280693515 0.540025983711619 0.7508707 0.42463943 prediction 0.465984593963792 Functional Loss - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43411733 chr6:43411736 nonsynonymous SNV 0.980 1 24 hm5C_associated_SNPs_73078 0 0 1 0 2 ABCC10 chr6:43411748 5'GT 43411748 Upstream 13bp
chrX 100507675 100507675 1 + G T rs41304462 100507673 + 100507653 100507693 41 GGGCCAGCAAAGGCAATAAGCTGCACTACCCCATCATGGAG GGGCCAGCAAAGGCAATAAGCTTCACTACCCCATCATGGAG < 41bp 0.732987187839792 0.379434408110885 0.15088785 0.10605997 prediction 0.465974375679583 Functional Loss - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100507673 chrX:100507675 synonymous SNV . 0 23 hm5C_associated_SNPs_73079 0 0 0 0 2 DRP2 chrX:100507594 3'AG 100507594 Downstream 82bp
chrX 100507675 100507675 1 + G T rs41304462 100507673 + 100507653 100507693 41 GGGCCAGCAAAGGCAATAAGCTGCACTACCCCATCATGGAG GGGCCAGCAAAGGCAATAAGCTTCACTACCCCATCATGGAG < 41bp 0.732987187839792 0.379434408110885 0.15088785 0.10605997 prediction 0.465974375679583 Functional Loss - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100507673 chrX:100507675 synonymous SNV . 0 23 hm5C_associated_SNPs_73079 0 0 0 0 2 DRP2 chrX:100507705 5'GT 100507705 Upstream 31bp
chrX 100507674 100507674 1 + T C SKCM 100507673 + 100507653 100507693 41 GGGCCAGCAAAGGCAATAAGCTGCACTACCCCATCATGGAG GGGCCAGCAAAGGCAATAAGCCGCACTACCCCATCATGGAG < 41bp 0.732987187839792 0.47091904776411 0.15088785 0.24643499 prediction 0.465974375679583 Functional Loss - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100507673 chrX:100507674 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_73080 0 0 0 0 2 DRP2 chrX:100507594 3'AG 100507594 Downstream 81bp
chrX 100507674 100507674 1 + T C SKCM 100507673 + 100507653 100507693 41 GGGCCAGCAAAGGCAATAAGCTGCACTACCCCATCATGGAG GGGCCAGCAAAGGCAATAAGCCGCACTACCCCATCATGGAG < 41bp 0.732987187839792 0.47091904776411 0.15088785 0.24643499 prediction 0.465974375679583 Functional Loss - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100507673 chrX:100507674 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_73080 0 0 0 0 2 DRP2 chrX:100507705 5'GT 100507705 Upstream 32bp
chr1 210267703 210267703 1 + T C PRAD 210267702 + 210267682 210267722 41 GAATGAGAAGAACACCCCCGCTGGATGAATTGCAGCCACCA GAATGAGAAGAACACCCCCGCCGGATGAATTGCAGCCACCA < 41bp 0.768220932604445 0.535234543497562 0.847502 0.9006382 prediction 0.465972778213767 Functional Loss - SYT14 ENSG00000143469 CDS Human protein_coding chr1:210267702 chr1:210267703 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_73082 0 0 0 0 1 SYT14 chr1:210267667 3'AG 210267667 Downstream 37bp
chr19 55175851 55175851 1 + G T LUAD 55175848 + 55175828 55175868 41 AGTCCTGTGACCTCAGTGCACGGGGGGACCTACAGGTGCTT AGTCCTGTGACCTCAGTGCACGGTGGGACCTACAGGTGCTT < 41bp 0.930807629164784 0.697825707265344 0.92504716 0.43292925 prediction 0.46596384379888 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55175848 chr19:55175851 synonymous SNV . 0 24 hm5C_associated_SNPs_73085 0 0 0 0 1 LILRB4 chr19:55175936 5'GT 55175936 Upstream 86bp
chr17 38346763 38346763 1 + C T GBM 38346761 + 38346741 38346781 41 CAGCCACCTGTTTGCCTGTACTCGGGACAGCTATGAGGCTC CAGCCACCTGTTTGCCTGTACTTGGGACAGCTATGAGGCTC < 41bp 0.732981050981069 0.447351335199765 0.11794701 0.22186911 prediction 0.465962101962138 Functional Loss - RAPGEFL1 ENSG00000108352 CDS Human protein_coding chr17:38346761 chr17:38346763 nonsynonymous SNV 0.705 3 23 hm5C_associated_SNPs_73086 0 0 0 0 2 RAPGEFL1 chr17:38346686 3'AG 38346686 Downstream 78bp
chr17 38346763 38346763 1 + C T GBM 38346761 + 38346741 38346781 41 CAGCCACCTGTTTGCCTGTACTCGGGACAGCTATGAGGCTC CAGCCACCTGTTTGCCTGTACTTGGGACAGCTATGAGGCTC < 41bp 0.732981050981069 0.447351335199765 0.11794701 0.22186911 prediction 0.465962101962138 Functional Loss - RAPGEFL1 ENSG00000108352 CDS Human protein_coding chr17:38346761 chr17:38346763 nonsynonymous SNV 0.705 3 23 hm5C_associated_SNPs_73086 0 0 0 0 2 RAPGEFL1 chr17:38346783 5'GT 38346783 Upstream 21bp
chr17 40812334 40812334 1 + G T UCEC 40812332 + 40812312 40812352 41 ACTGGGCCAGCGGATTCTCCCAGGTGTCCTAGCGACCATTC ACTGGGCCAGCGGATTCTCCCATGTGTCCTAGCGACCATTC < 41bp 0.797971867517519 0.564994537973322 0.9059969 0.0834648 prediction 0.465954659088394 Functional Loss - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40812332 chr17:40812334 nonsynonymous SNV 0.963 1 23 hm5C_associated_SNPs_73088 0 0 1 0 1 TUBG2 chr17:40812334 5'GT 40812334 Upstream 1bp
chr1 46740259 46740259 1 + T C UCEC 46740258 + 46740238 46740278 41 GCAAAGCTGGGGGCTGTGGCCTCAATCTCATTGGGGCTAAC GCAAAGCTGGGGGCTGTGGCCCCAATCTCATTGGGGCTAAC < 41bp 0.818151089179124 0.585174462268459 0.85856926 0.5666747 prediction 0.465953253821328 Functional Loss - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46740258 chr1:46740259 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_73089 0 0 1 0 1 RAD54L chr1:46740210 3'AG 46740210 Downstream 50bp
chr1 28271811 28271811 1 + G A SKCM 28271808 + 28271788 28271828 41 AGGTATCCAAAGACCCCTTCCAGGTGTGCCCATCAGCTGGA AGGTATCCAAAGACCCCTTCCAGATGTGCCCATCAGCTGGA < 41bp 0.754910195535403 0.521933627245263 0.7802994 0.50512236 prediction 0.46595313658028 Functional Loss - SMPDL3B ENSG00000130768 CDS Human protein_coding chr1:28271808 chr1:28271811 nonsynonymous SNV 0.917 2 24 hm5C_associated_SNPs_73090 0 0 0 0 1 SMPDL3B chr1:28271743 3'AG 28271743 Downstream 69bp
chr18 61597289 61597289 1 + G A SKCM 61597286 + 61597266 61597306 41 TTTGTTCTTACAGGTAAAATCCAGAATCTCCTGCCTGATGA TTTGTTCTTACAGGTAAAATCCAAAATCTCCTGCCTGATGA < 41bp 0.747328508725256 0.514354360971473 0.66785717 0.3822961 prediction 0.465948295507566 Functional Loss - SERPINB10 ENSG00000242550 CDS Human protein_coding chr18:61597286 chr18:61597289 synonymous SNV . 0 24 hm5C_associated_SNPs_73092 0 0 0 0 1 SERPINB10 chr18:61597279 3'AG 61597279 Downstream 11bp
chr11 64799998 64799998 1 + T C rs534236 64799997 + 64799977 64800017 41 CCGCCGCCTCGAGGAGTTCCCTGCTTTCCCCCGGGCCCAGG CCGCCGCCTCGAGGAGTTCCCCGCTTTCCCCCGGGCCCAGG < 41bp 0.791698142431818 0.558727347688936 0.060080647 0.03872168 prediction 0.465941589485764 Functional Loss - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64799997 chr11:64799998 nonsynonymous SNV 0.495 0 22 hm5C_associated_SNPs_73095 0 0 0 0 2 SNX15 chr11:64799903 3'AG 64799903 Downstream 96bp
chr11 64799998 64799998 1 + T C rs534236 64799997 + 64799977 64800017 41 CCGCCGCCTCGAGGAGTTCCCTGCTTTCCCCCGGGCCCAGG CCGCCGCCTCGAGGAGTTCCCCGCTTTCCCCCGGGCCCAGG < 41bp 0.791698142431818 0.558727347688936 0.060080647 0.03872168 prediction 0.465941589485764 Functional Loss - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64799997 chr11:64799998 nonsynonymous SNV 0.495 0 22 hm5C_associated_SNPs_73095 0 0 0 0 2 SNX15 chr11:64800023 5'GT 64800023 Upstream 26bp
chr12 9995016 9995016 1 + C T LUSC 9995014 + 9994994 9995034 41 ATGGACTTGGGTGGATGGTTCTCCAATAGATTCAAAGATGT ATGGACTTGGGTGGATGGTTCTTCAATAGATTCAAAGATGT < 41bp 0.732962173014098 0.454297286623889 0.94877654 0.13089767 prediction 0.465924346028195 Functional Loss - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9995014 chr12:9995016 nonsynonymous SNV 0.437 0 23 hm5C_associated_SNPs_73098 0 0 0 2 2 KLRF1 chr12:9994920 3'AG 9994920 Downstream 97bp
chr12 9995016 9995016 1 + C T LUSC 9995014 + 9994994 9995034 41 ATGGACTTGGGTGGATGGTTCTCCAATAGATTCAAAGATGT ATGGACTTGGGTGGATGGTTCTTCAATAGATTCAAAGATGT < 41bp 0.732962173014098 0.454297286623889 0.94877654 0.13089767 prediction 0.465924346028195 Functional Loss - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9995014 chr12:9995016 nonsynonymous SNV 0.437 0 23 hm5C_associated_SNPs_73098 0 0 0 2 2 KLRF1 chr12:9995032 5'GT 9995032 Upstream 17bp
chr19 54417826 54417826 1 + C T HNSC 54417824 + 54417804 54417844 41 ATCAATTTGGTGACGGAAAACACGGAGAATATTCTGAGTGA ATCAATTTGGTGACGGAAAACATGGAGAATATTCTGAGTGA < 41bp 0.822160801451175 0.589200597533481 0.72169995 0.4372793 prediction 0.465920407835388 Functional Loss - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54417824 chr19:54417826 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_73099 0 0 0 0 2 CACNG7 chr19:54417754 3'AG 54417754 Downstream 73bp
chr19 54417826 54417826 1 + C T HNSC 54417824 + 54417804 54417844 41 ATCAATTTGGTGACGGAAAACACGGAGAATATTCTGAGTGA ATCAATTTGGTGACGGAAAACATGGAGAATATTCTGAGTGA < 41bp 0.822160801451175 0.589200597533481 0.72169995 0.4372793 prediction 0.465920407835388 Functional Loss - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54417824 chr19:54417826 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_73099 0 0 0 0 2 CACNG7 chr19:54417840 5'GT 54417840 Upstream 15bp
chr9 132642461 132642461 1 + A C COAD 132642457 + 132642437 132642477 41 ACAGCCTGTATGGAGGTGGCCCCGAGATTGCCATCCGCCAG ACAGCCTGTATGGAGGTGGCCCCGCGATTGCCATCCGCCAG < 41bp 0.732958932641153 0.33237776635407 0.25801787 0.7168506 prediction 0.465917865282305 Functional Loss - USP20 ENSG00000136878 CDS Human protein_coding chr9:132642457 chr9:132642461 nonsynonymous SNV 0.158 4 25 hm5C_associated_SNPs_73100 0 0 1 0 1 USP20 chr9:132642392 3'AG 132642392 Downstream 70bp
chr1 206666366 206666366 1 + G A UCEC 206666363 + 206666343 206666383 41 GTGTTCTCTTGAGGGTGGTGCACGAGACCAGGAACCACCTG GTGTTCTCTTGAGGGTGGTGCACAAGACCAGGAACCACCTG < 41bp 0.732958310214342 0.485747022847932 0.73511255 0.42506698 prediction 0.465916620428684 Functional Loss - IKBKE ENSG00000143466;ENSG00000162888 CDS Human other chr1:206666363 chr1:206666366 nonsynonymous SNV 0.012 0 24 hm5C_associated_SNPs_73102 0 0 0 0 1 IKBKE chr1:206666452 5'GT 206666452 Upstream 87bp
chr7 98249103 98249103 1 + C T LUAD 98249101 + 98249081 98249121 41 TCCCTGCTGCACAATGAGACCTCGGCTCACCGGCAGAAGAC TCCCTGCTGCACAATGAGACCTTGGCTCACCGGCAGAAGAC < 41bp 0.817590965035858 0.58463766878094 0.1467528 0.13522208 prediction 0.465906592509836 Functional Loss - NPTX2 ENSG00000106236 CDS Human protein_coding chr7:98249101 chr7:98249103 nonsynonymous SNV 0.954 1 23 hm5C_associated_SNPs_73104 0 0 1 0 1 NPTX2 chr7:98249171 5'GT 98249171 Upstream 69bp
chr4 110925730 110925730 1 + C T SARC 110925728 + 110925708 110925748 41 CGAGCAGAGATGTGAGGAGTCGCAGGCCTGCTGACACTGAG CGAGCAGAGATGTGAGGAGTCGTAGGCCTGCTGACACTGAG < 41bp 0.732951036214768 0.465949986812931 0.64463055 0.6809342 prediction 0.465902072429536 Functional Loss - EGF ENSG00000138798 CDS Human protein_coding chr4:110925728 chr4:110925730 synonymous SNV . 0 23 hm5C_associated_SNPs_73105 0 0 0 0 2 EGF chr4:110925661 3'AG 110925661 Downstream 70bp
chr4 110925730 110925730 1 + C T SARC 110925728 + 110925708 110925748 41 CGAGCAGAGATGTGAGGAGTCGCAGGCCTGCTGACACTGAG CGAGCAGAGATGTGAGGAGTCGTAGGCCTGCTGACACTGAG < 41bp 0.732951036214768 0.465949986812931 0.64463055 0.6809342 prediction 0.465902072429536 Functional Loss - EGF ENSG00000138798 CDS Human protein_coding chr4:110925728 chr4:110925730 synonymous SNV . 0 23 hm5C_associated_SNPs_73105 0 0 0 0 2 EGF chr4:110925778 5'GT 110925778 Upstream 49bp
chr22 18562773 18562773 1 + G A GBM 18562770 + 18562750 18562790 41 AAAAGCTACCCCCCAAAGTCCTGGAGCTGTGGTAAGTCTTC AAAAGCTACCCCCCAAAGTCCTGAAGCTGTGGTAAGTCTTC < 41bp 0.757352188308531 0.524402028353496 0.31216776 0.13263169 prediction 0.46590031991007 Functional Loss - PEX26 ENSG00000215193 CDS Human protein_coding chr22:18562770 chr22:18562773 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_73106 0 0 1 0 1 PEX26 chr22:18562780 5'GT 18562780 Upstream 8bp
chr9 34659879 34659879 1 + T C COAD 34659878 + 34659858 34659898 41 AGCACCTGGAGCCCGGAGGCCTGGGGAACTCCGAGCACTGG AGCACCTGGAGCCCGGAGGCCCGGGGAACTCCGAGCACTGG < 41bp 0.780546778984322 0.547596701560428 0.880898 0.90072423 prediction 0.46590015484779 Functional Loss - IL11RA ENSG00000137070 CDS Human protein_coding chr9:34659878 chr9:34659879 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_73107 0 0 0 0 1 IL11RA chr9:34659897 5'GT 34659897 Upstream 19bp
chr21 45712255 45712255 1 + C T LIHC 45712253 + 45712233 45712273 41 GCAGCCCCGGGCAGAGGAGCCCCGGCCCCAGGAGCCACCCG GCAGCCCCGGGCAGAGGAGCCCTGGCCCCAGGAGCCACCCG < 41bp 0.73589196971308 0.502942712010111 0.6119132 0.50302976 prediction 0.465898515405937 Functional Loss - AIRE ENSG00000160224 CDS Human protein_coding chr21:45712253 chr21:45712255 nonsynonymous SNV 0.002 3 23 hm5C_associated_SNPs_73108 1 0 0 0 2 AIRE chr21:45712185 3'AG 45712185 Downstream 71bp
chr21 45712255 45712255 1 + C T LIHC 45712253 + 45712233 45712273 41 GCAGCCCCGGGCAGAGGAGCCCCGGCCCCAGGAGCCACCCG GCAGCCCCGGGCAGAGGAGCCCTGGCCCCAGGAGCCACCCG < 41bp 0.73589196971308 0.502942712010111 0.6119132 0.50302976 prediction 0.465898515405937 Functional Loss - AIRE ENSG00000160224 CDS Human protein_coding chr21:45712253 chr21:45712255 nonsynonymous SNV 0.002 3 23 hm5C_associated_SNPs_73108 1 0 0 0 2 AIRE chr21:45712284 5'GT 45712284 Upstream 30bp
chr16 81944314 81944314 1 + C T UCEC 81944312 + 81944292 81944332 41 CTGTGCCCAACCCCAACCCCCACGAGTCCAAGCCGTACGTG CTGTGCCCAACCCCAACCCCCATGAGTCCAAGCCGTACGTG < 41bp 0.811486853289242 0.578541315312506 0.14287362 0.058621198 prediction 0.465891075953471 Functional Loss - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81944312 chr16:81944314 synonymous SNV . 0 23 hm5C_associated_SNPs_73109 0 0 0 0 1 PLCG2 chr16:81944325 5'GT 81944325 Upstream 12bp
chr1 9009470 9009470 1 + G C rs2274330 9009466 + 9009446 9009486 41 GACAGGCTATGAGACCCAGGCAGGGGAGTTCCCCATGGTCA GACAGGCTATGAGACCCAGGCAGGCGAGTTCCCCATGGTCA < 41bp 0.865609561914841 0.632666772388261 0.899063 0.87283003 prediction 0.46588557905316 Functional Loss - CA6 ENSG00000131686 CDS Human protein_coding chr1:9009466 chr1:9009470 synonymous SNV . 0 25 hm5C_associated_SNPs_73110 0 0 0 0 1 CA6 chr1:9009501 5'GT 9009501 Upstream 32bp
chrX 36317165 36317165 1 + G A rs16987461 36317162 + 36317142 36317182 41 TCACTTAGAGGTGCAGTTAACGAGTGCTGCCCTTAATGGGG TCACTTAGAGGTGCAGTTAACGAATGCTGCCCTTAATGGGG < 41bp 0.756329986269253 0.523389567607688 0.49754202 0.2185896 prediction 0.46588083732313 Functional Loss - CFAP47 ENSG00000205081 CDS Human other chrX:36317162 chrX:36317165 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_73111 0 0 0 0 1 CFAP47 chrX:36317092 3'AG 36317092 Downstream 74bp
chr21 35260505 35260505 1 + G T UCEC 35260503 + 35260483 35260523 41 TGGCGGACATCAAGAAAGACCAGGGCTCCAAAGGTCCAGTT TGGCGGACATCAAGAAAGACCATGGCTCCAAAGGTCCAGTT < 41bp 0.732939045962029 0.450093084526897 0.75564957 0.12508813 prediction 0.465878091924058 Functional Loss - ITSN1 ENSG00000205726 CDS Human protein_coding chr21:35260503 chr21:35260505 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_73112 0 0 0 0 1 ITSN1 chr21:35260456 3'AG 35260456 Downstream 50bp
chr15 97327469 97327469 1 + C T rs141790794 97327467 + 97327447 97327487 41 GGCCCAGGAGGCCTCAAGGGCCCGGTGTGGCCTGCAAAGGA GGCCCAGGAGGCCTCAAGGGCCTGGTGTGGCCTGCAAAGGA < 41bp 0.770760863060642 0.53782299454297 0.21838742 0.21025544 prediction 0.465875737035344 Functional Loss - SPATA8 ENSG00000185594 CDS Human protein_coding chr15:97327467 chr15:97327469 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_73113 0 0 0 0 2 SPATA8 chr15:97327383 3'AG 97327383 Downstream 87bp
chr15 97327469 97327469 1 + C T rs141790794 97327467 + 97327447 97327487 41 GGCCCAGGAGGCCTCAAGGGCCCGGTGTGGCCTGCAAAGGA GGCCCAGGAGGCCTCAAGGGCCTGGTGTGGCCTGCAAAGGA < 41bp 0.770760863060642 0.53782299454297 0.21838742 0.21025544 prediction 0.465875737035344 Functional Loss - SPATA8 ENSG00000185594 CDS Human protein_coding chr15:97327467 chr15:97327469 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_73113 0 0 0 0 2 SPATA8 chr15:97327489 5'GT 97327489 Upstream 21bp
chr11 1861865 1861865 1 + G T THYM 1861863 + 1861843 1861883 41 ACTGCCCGCCGCTGCATATCCCGGGCTCCATGTCTGAAGTG ACTGCCCGCCGCTGCATATCCCTGGCTCCATGTCTGAAGTG < 41bp 0.907408202638271 0.674472796187596 0.9114737 0.3489532 prediction 0.46587081290135 Functional Loss - TNNI2 ENSG00000130598 CDS Human protein_coding chr11:1861863 chr11:1861865 synonymous SNV . 0 23 hm5C_associated_SNPs_73117 0 0 0 0 1 TNNI2 chr11:1861886 5'GT 1861886 Upstream 22bp
chr12 66696560 66696560 1 + G T LUSC 66696557 + 66696537 66696577 41 GTAAAGGCTGGCAGCCTCCCCGGGTGCCTCCGCGGTGAGGA GTAAAGGCTGGCAGCCTCCCCGGTTGCCTCCGCGGTGAGGA < 41bp 0.9213870889903 0.688452538454473 0.92753613 0.79387796 prediction 0.465869101071654 Functional Loss - HELB ENSG00000127311 CDS Human protein_coding chr12:66696557 chr12:66696560 synonymous SNV . 0 24 hm5C_associated_SNPs_73118 0 0 0 0 1 HELB chr12:66696570 5'GT 66696570 Upstream 11bp
chr17 40762178 40762178 1 + G A BRCA 40762175 + 40762155 40762195 41 GCCGAGCATGGTATCAGCCCCGAGGGCATCGTGGAGGAGTT GCCGAGCATGGTATCAGCCCCGAAGGCATCGTGGAGGAGTT < 41bp 0.755000491341056 0.522068808472227 0.4180213 0.15451908 prediction 0.465863365737659 Functional Loss - TUBG1 ENSG00000131462 CDS Human protein_coding chr17:40762175 chr17:40762178 synonymous SNV . 0 24 hm5C_associated_SNPs_73121 0 0 1 0 2 TUBG1 chr17:40762126 3'AG 40762126 Downstream 53bp
chr17 40762178 40762178 1 + G A BRCA 40762175 + 40762155 40762195 41 GCCGAGCATGGTATCAGCCCCGAGGGCATCGTGGAGGAGTT GCCGAGCATGGTATCAGCCCCGAAGGCATCGTGGAGGAGTT < 41bp 0.755000491341056 0.522068808472227 0.4180213 0.15451908 prediction 0.465863365737659 Functional Loss - TUBG1 ENSG00000131462 CDS Human protein_coding chr17:40762175 chr17:40762178 synonymous SNV . 0 24 hm5C_associated_SNPs_73121 0 0 1 0 2 TUBG1 chr17:40762238 5'GT 40762238 Upstream 61bp
chr22 46685395 46685395 1 + C T UCEC 46685393 + 46685373 46685413 41 CTGAGGACGGGAACCCTGACCGCGTCCTGGAGCTGCTCCTG CTGAGGACGGGAACCCTGACCGTGTCCTGGAGCTGCTCCTG < 41bp 0.81398503682639 0.58106297533336 0.3876556 0.3209781 prediction 0.46584412298606 Functional Loss - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46685393 chr22:46685395 synonymous SNV . 0 23 hm5C_associated_SNPs_73123 0 0 1 0 2 TTC38 chr22:46685299 3'AG 46685299 Downstream 97bp
chr22 46685395 46685395 1 + C T UCEC 46685393 + 46685373 46685413 41 CTGAGGACGGGAACCCTGACCGCGTCCTGGAGCTGCTCCTG CTGAGGACGGGAACCCTGACCGTGTCCTGGAGCTGCTCCTG < 41bp 0.81398503682639 0.58106297533336 0.3876556 0.3209781 prediction 0.46584412298606 Functional Loss - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46685393 chr22:46685395 synonymous SNV . 0 23 hm5C_associated_SNPs_73123 0 0 1 0 2 TTC38 chr22:46685458 5'GT 46685458 Upstream 64bp
chr2 128385982 128385982 1 + C T rs147310604 128385980 + 128385960 128386000 41 GGGCAGAGGCTGCTGCTCTCCACGATGCATGAGGAGTACGA GGGCAGAGGCTGCTGCTCTCCATGATGCATGAGGAGTACGA < 41bp 0.805098393092197 0.572176381397927 0.077375054 0.059655488 prediction 0.465844023388541 Functional Loss - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128385980 chr2:128385982 nonsynonymous SNV 0.010 5 23 hm5C_associated_SNPs_73124 0 0 0 0 1 MYO7B chr2:128385947 3'AG 128385947 Downstream 36bp
chr1 226788375 226788375 1 + G T UCEC 226788372 + 226788352 226788392 41 TCTGTGCTGCTGCAGTTTCCCAAGGTGAGTCTGCGGATGGA TCTGTGCTGCTGCAGTTTCCCAATGTGAGTCTGCGGATGGA < 41bp 0.732921240640359 0.34458514019496 0.728802 0.17563042 prediction 0.465842481280718 Functional Loss - STUM ENSG00000203685 CDS Human protein_coding chr1:226788372 chr1:226788375 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_73125 0 0 0 0 2 STUM chr1:226788367 3'AG 226788367 Downstream 9bp
chr1 226788375 226788375 1 + G T UCEC 226788372 + 226788352 226788392 41 TCTGTGCTGCTGCAGTTTCCCAAGGTGAGTCTGCGGATGGA TCTGTGCTGCTGCAGTTTCCCAATGTGAGTCTGCGGATGGA < 41bp 0.732921240640359 0.34458514019496 0.728802 0.17563042 prediction 0.465842481280718 Functional Loss - STUM ENSG00000203685 CDS Human protein_coding chr1:226788372 chr1:226788375 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_73125 0 0 0 0 2 STUM chr1:226788375 5'GT 226788375 Upstream 1bp
chr20 62641573 62641573 1 + T C LIHC 62641572 + 62641552 62641592 41 GCCCTCGAGCATGTTCCAAACTCGGTTCGCTTGTGGAAAGC GCCCTCGAGCATGTTCCAAACCCGGTTCGCTTGTGGAAAGC < 41bp 0.809813139667382 0.576893825605912 0.27002093 0.12386516 prediction 0.465838628122941 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62641572 chr20:62641573 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_73127 0 0 1 0 2 PRPF6 chr20:62641553 3'AG 62641553 Downstream 21bp
chr20 62641573 62641573 1 + T C LIHC 62641572 + 62641552 62641592 41 GCCCTCGAGCATGTTCCAAACTCGGTTCGCTTGTGGAAAGC GCCCTCGAGCATGTTCCAAACCCGGTTCGCTTGTGGAAAGC < 41bp 0.809813139667382 0.576893825605912 0.27002093 0.12386516 prediction 0.465838628122941 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62641572 chr20:62641573 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_73127 0 0 1 0 2 PRPF6 chr20:62641671 5'GT 62641671 Upstream 99bp
chr1 151015555 151015555 1 + G A UCEC 151015552 + 151015532 151015572 41 GAGGGTGTTCCGAATGGGACCACGGGAGCAGCGCGTAGACA GAGGGTGTTCCGAATGGGACCACAGGAGCAGCGCGTAGACA < 41bp 0.776948132326235 0.544030536417077 0.31470466 0.34288296 prediction 0.465835191818316 Functional Loss - BNIPL ENSG00000163141 CDS Human protein_coding chr1:151015552 chr1:151015555 nonsynonymous SNV 0.747 0 24 hm5C_associated_SNPs_73128 0 0 0 0 1 BNIPL chr1:151015614 5'GT 151015614 Upstream 60bp
chr2 238002771 238002771 1 + G A STAD 238002768 + 238002748 238002788 41 GCGCCTTTGCCCTGGTCTCTCAAGCGTATACTTCAATCATC GCGCCTTTGCCCTGGTCTCTCAAACGTATACTTCAATCATC < 41bp 0.772789220033454 0.539872732954789 0.648703 0.23642555 prediction 0.465832974157329 Functional Loss - COPS8 ENSG00000198612 CDS Human protein_coding chr2:238002768 chr2:238002771 nonsynonymous SNV 0.516 2 24 hm5C_associated_SNPs_73129 0 0 1 0 2 COPS8 chr2:238002733 3'AG 238002733 Downstream 39bp
chr2 238002771 238002771 1 + G A STAD 238002768 + 238002748 238002788 41 GCGCCTTTGCCCTGGTCTCTCAAGCGTATACTTCAATCATC GCGCCTTTGCCCTGGTCTCTCAAACGTATACTTCAATCATC < 41bp 0.772789220033454 0.539872732954789 0.648703 0.23642555 prediction 0.465832974157329 Functional Loss - COPS8 ENSG00000198612 CDS Human protein_coding chr2:238002768 chr2:238002771 nonsynonymous SNV 0.516 2 24 hm5C_associated_SNPs_73129 0 0 1 0 2 COPS8 chr2:238002840 5'GT 238002840 Upstream 70bp
chr19 2873531 2873531 1 + C T COAD 2873529 + 2873509 2873549 41 GAAGACGTGGTTGTGGATTTCACGCTGGAGGAGTGGGCCTT GAAGACGTGGTTGTGGATTTCATGCTGGAGGAGTGGGCCTT < 41bp 0.732915580515735 0.457067033994406 0.2743673 0.23260337 prediction 0.46583116103147 Functional Loss - ZNF556 ENSG00000172000 CDS Human protein_coding chr19:2873529 chr19:2873531 nonsynonymous SNV 0.015 3 23 hm5C_associated_SNPs_73130 0 0 1 0 2 ZNF556 chr19:2873494 3'AG 2873494 Downstream 38bp
chr19 2873531 2873531 1 + C T COAD 2873529 + 2873509 2873549 41 GAAGACGTGGTTGTGGATTTCACGCTGGAGGAGTGGGCCTT GAAGACGTGGTTGTGGATTTCATGCTGGAGGAGTGGGCCTT < 41bp 0.732915580515735 0.457067033994406 0.2743673 0.23260337 prediction 0.46583116103147 Functional Loss - ZNF556 ENSG00000172000 CDS Human protein_coding chr19:2873529 chr19:2873531 nonsynonymous SNV 0.015 3 23 hm5C_associated_SNPs_73130 0 0 1 0 2 ZNF556 chr19:2873620 5'GT 2873620 Upstream 90bp
chr19 2873532 2873532 1 + G T GBM 2873529 + 2873509 2873549 41 GAAGACGTGGTTGTGGATTTCACGCTGGAGGAGTGGGCCTT GAAGACGTGGTTGTGGATTTCACTCTGGAGGAGTGGGCCTT < 41bp 0.732915580515735 0.331018796873834 0.2743673 0.1594094 prediction 0.46583116103147 Functional Loss - ZNF556 ENSG00000172000 CDS Human protein_coding chr19:2873529 chr19:2873532 synonymous SNV . 0 24 hm5C_associated_SNPs_73131 0 0 1 0 2 ZNF556 chr19:2873494 3'AG 2873494 Downstream 39bp
chr19 2873532 2873532 1 + G T GBM 2873529 + 2873509 2873549 41 GAAGACGTGGTTGTGGATTTCACGCTGGAGGAGTGGGCCTT GAAGACGTGGTTGTGGATTTCACTCTGGAGGAGTGGGCCTT < 41bp 0.732915580515735 0.331018796873834 0.2743673 0.1594094 prediction 0.46583116103147 Functional Loss - ZNF556 ENSG00000172000 CDS Human protein_coding chr19:2873529 chr19:2873532 synonymous SNV . 0 24 hm5C_associated_SNPs_73131 0 0 1 0 2 ZNF556 chr19:2873620 5'GT 2873620 Upstream 89bp
chr4 3447852 3447852 1 + A T LIHC 3447848 + 3447828 3447868 41 TCCCCGGGGCGCCAGGCCTGCGGCAGGAGGCACAAGAAGAG TCCCCGGGGCGCCAGGCCTGCGGCTGGAGGCACAAGAAGAG < 41bp 0.87214790023515 0.63923356557105 0.7856152 0.7628405 prediction 0.4658286693282 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3447848 chr4:3447852 nonsynonymous SNV 0.922 3 25 hm5C_associated_SNPs_73132 0 0 1 0 1 HGFAC chr4:3447769 3'AG 3447769 Downstream 84bp
chr15 91500936 91500936 1 + G A LUAD 91500933 + 91500913 91500953 41 GCTGAGGTGGCCGCGGGGGGCTGGCATTCTGTGTGTGTGAG GCTGAGGTGGCCGCGGGGGGCTGACATTCTGTGTGTGTGAG < 41bp 0.732911613565003 0.490207397620844 0.3395294 0.25542617 prediction 0.465823227130006 Functional Loss - RCCD1 ENSG00000166965 CDS Human protein_coding chr15:91500933 chr15:91500936 stopgain 0.999 1 24 hm5C_associated_SNPs_73133 0 0 1 0 1 RCCD1 chr15:91500955 5'GT 91500955 Upstream 20bp
chr6 47680154 47680154 1 + A T UCEC 47680150 + 47680130 47680170 41 CATCTATACCTCTGCATATTCTAGACTTTCGAGCTCCAGAG CATCTATACCTCTGCATATTCTAGTCTTTCGAGCTCCAGAG < 41bp 0.878536550944506 0.645633429384914 0.24584717 0.22407764 prediction 0.465806243119185 Functional Loss - ADGRF4 ENSG00000153294 CDS Human protein_coding chr6:47680150 chr6:47680154 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_73135 0 0 0 0 1 ADGRF4 chr6:47680093 3'AG 47680093 Downstream 62bp
chr11 66254796 66254796 1 + G A PAAD 66254793 + 66254773 66254813 41 TGGAAGATGCCAAATTGGCCCAGGACTTTCTGGACTCACAG TGGAAGATGCCAAATTGGCCCAGAACTTTCTGGACTCACAG < 41bp 0.761744591879367 0.528854064015251 0.560171 0.14490199 prediction 0.465781055728232 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66254793 chr11:66254796 nonsynonymous SNV 0.990 0 24 hm5C_associated_SNPs_73140 0 0 0 0 2 DPP3 chr11:66254739 3'AG 66254739 Downstream 58bp
chr11 66254796 66254796 1 + G A PAAD 66254793 + 66254773 66254813 41 TGGAAGATGCCAAATTGGCCCAGGACTTTCTGGACTCACAG TGGAAGATGCCAAATTGGCCCAGAACTTTCTGGACTCACAG < 41bp 0.761744591879367 0.528854064015251 0.560171 0.14490199 prediction 0.465781055728232 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66254793 chr11:66254796 nonsynonymous SNV 0.990 0 24 hm5C_associated_SNPs_73140 0 0 0 0 2 DPP3 chr11:66254813 5'GT 66254813 Upstream 18bp
chr9 117350190 117350190 1 + G T UCEC 117350187 + 117350167 117350207 41 CGGGCAGCCGAGAAGGTGTCCGAGGCCCGCAAAAGTGAGTT CGGGCAGCCGAGAAGGTGTCCGATGCCCGCAAAAGTGAGTT < 41bp 0.913866935984474 0.680977611580986 0.81099117 0.47822443 prediction 0.465778648806977 Functional Loss - ATP6V1G1 ENSG00000136888 CDS Human protein_coding chr9:117350187 chr9:117350190 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_73141 0 0 1 0 1 ATP6V1G1 chr9:117350200 5'GT 117350200 Upstream 11bp
chr5 180424285 180424285 1 + C T SKCM 180424283 + 180424263 180424303 41 ATCCAGTTACTCTGCCTGTCCTCAGGCTGGTTCCCCCAGCC ATCCAGTTACTCTGCCTGTCCTTAGGCTGGTTCCCCCAGCC < 41bp 0.732879042721051 0.462485987875363 0.068422616 0.09864926 prediction 0.465758085442102 Functional Loss - BTNL3 ENSG00000168903 CDS Human protein_coding chr5:180424283 chr5:180424285 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_73145 0 0 0 0 1 BTNL3 chr5:180424213 3'AG 180424213 Downstream 73bp
chr19 55175841 55175841 1 + C T LUSC 55175839 + 55175819 55175859 41 TTCCCCATGAGTCCTGTGACCTCAGTGCACGGGGGGACCTA TTCCCCATGAGTCCTGTGACCTTAGTGCACGGGGGGACCTA < 41bp 0.732877882975061 0.464356585774468 0.24532586 0.2291772 prediction 0.465755765950122 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55175839 chr19:55175841 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_73147 0 0 0 0 1 LILRB4 chr19:55175936 5'GT 55175936 Upstream 96bp
chr18 77246597 77246597 1 + C T HNSC 77246595 + 77246575 77246615 41 TGGCCACGCACCCCGGCTCGCCCGGGCAGCCACCCCCGGCC TGGCCACGCACCCCGGCTCGCCTGGGCAGCCACCCCCGGCC < 41bp 0.747892850468826 0.515015403718146 0.4478439 0.49778274 prediction 0.465754893501362 Functional Loss - NFATC1 ENSG00000131196 CDS Human protein_coding chr18:77246595 chr18:77246597 synonymous SNV . 0 23 hm5C_associated_SNPs_73148 0 0 0 0 1 NFATC1 chr18:77246630 5'GT 77246630 Upstream 34bp
chr19 19327834 19327834 1 + G T UCEC 19327832 + 19327812 19327852 41 TGCTCTTTGTGGCTGGGGAACAGGGTGAGTTGGTTTGTGGG TGCTCTTTGTGGCTGGGGAACATGGTGAGTTGGTTTGTGGG < 41bp 0.732877221639935 0.369191813962999 0.9101133 0.52804774 prediction 0.46575444327987 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19327832 chr19:19327834 nonsynonymous SNV 0.977 3 23 hm5C_associated_SNPs_73149 0 0 0 0 1 NCAN chr19:19327756 3'AG 19327756 Downstream 79bp
chr4 120072050 120072050 1 + A C LUAD 120072049 + 120072029 120072069 41 GTTGATGGCATGGACCTGGGCAAAAAGGTCAGCATCCCCAG GTTGATGGCATGGACCTGGGCCAAAAGGTCAGCATCCCCAG < 41bp 0.772119364485152 0.539244971385661 0.13924405 0.025604635 prediction 0.46574878619898 Functional Loss - MYOZ2 ENSG00000172399 CDS Human protein_coding chr4:120072049 chr4:120072050 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_73150 0 0 0 0 1 MYOZ2 chr4:120072027 3'AG 120072027 Downstream 24bp
chr5 34929981 34929981 1 + C T UCEC 34929979 + 34929959 34929999 41 GCGACGCCAGCGAGGAGGAGCTCAAGAAGGCCTATCGGAAG GCGACGCCAGCGAGGAGGAGCTTAAGAAGGCCTATCGGAAG < 41bp 0.774954889620398 0.542083847324504 0.68357384 0.33688444 prediction 0.465742084591788 Functional Loss - DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34929979 chr5:34929981 synonymous SNV . 0 23 hm5C_associated_SNPs_73155 0 0 1 0 1 DNAJC21 chr5:34930021 5'GT 34930021 Upstream 41bp
chr15 41145946 41145946 1 + G A UCEC 41145943 + 41145923 41145963 41 TCCAACAAGGTGGGTCGCTGCCGGGGCTCTTTCCCACGCTG TCCAACAAGGTGGGTCGCTGCCGAGGCTCTTTCCCACGCTG < 41bp 0.788830068513105 0.555968192482112 0.939985 0.86885583 prediction 0.465723752061987 Functional Loss - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41145943 chr15:41145946 synonymous SNV . 0 24 hm5C_associated_SNPs_73159 0 0 0 0 1 SPINT1 chr15:41145909 3'AG 41145909 Downstream 38bp
chr12 85492702 85492702 1 + A T LUSC 85492698 + 85492678 85492718 41 GAATTGCACTTGGATGATAACAGCATTTCAACTGTGGAAGC GAATTGCACTTGGATGATAACAGCTTTTCAACTGTGGAAGC < 41bp 0.732857161048939 0.40426060699292 0.16049391 0.10161123 prediction 0.465714322097878 Functional Loss - LRRIQ1 ENSG00000133640 CDS Human protein_coding chr12:85492698 chr12:85492702 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_73163 0 0 0 0 2 LRRIQ1 chr12:85492645 3'AG 85492645 Downstream 58bp
chr12 85492702 85492702 1 + A T LUSC 85492698 + 85492678 85492718 41 GAATTGCACTTGGATGATAACAGCATTTCAACTGTGGAAGC GAATTGCACTTGGATGATAACAGCTTTTCAACTGTGGAAGC < 41bp 0.732857161048939 0.40426060699292 0.16049391 0.10161123 prediction 0.465714322097878 Functional Loss - LRRIQ1 ENSG00000133640 CDS Human protein_coding chr12:85492698 chr12:85492702 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_73163 0 0 0 0 2 LRRIQ1 chr12:85492772 5'GT 85492772 Upstream 71bp
chrX 153663684 153663684 1 + G A UCEC 153663681 + 153663661 153663701 41 ACTGGTTTACCATGGAGCGCCTCGAAGTCCACAGCAATGGC ACTGGTTTACCATGGAGCGCCTCAAAGTCCACAGCAATGGC < 41bp 0.762397272935713 0.529542427014355 0.55303776 0.90079784 prediction 0.465709691842714 Functional Loss - ATP6AP1 ENSG00000071553 CDS Human protein_coding chrX:153663681 chrX:153663684 nonsynonymous SNV 0.910 2 24 hm5C_associated_SNPs_73164 1 0 1 0 1 ATP6AP1 chrX:153663620 3'AG 153663620 Downstream 65bp
chr16 1392228 1392228 1 + G T UCEC 1392226 + 1392206 1392246 41 AGCCCGCGCAAACGGGACAGCAGGACCCACCGAGGACCACA AGCCCGCGCAAACGGGACAGCATGACCCACCGAGGACCACA < 41bp 0.732850138256028 0.372332557942227 0.6302795 0.2131798 prediction 0.465700276512055 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1392226 chr16:1392228 stopgain 0.084 0 23 hm5C_associated_SNPs_73165 0 0 0 0 2 BAIAP3 chr16:1392182 3'AG 1392182 Downstream 47bp
chr16 1392228 1392228 1 + G T UCEC 1392226 + 1392206 1392246 41 AGCCCGCGCAAACGGGACAGCAGGACCCACCGAGGACCACA AGCCCGCGCAAACGGGACAGCATGACCCACCGAGGACCACA < 41bp 0.732850138256028 0.372332557942227 0.6302795 0.2131798 prediction 0.465700276512055 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1392226 chr16:1392228 stopgain 0.084 0 23 hm5C_associated_SNPs_73165 0 0 0 0 2 BAIAP3 chr16:1392284 5'GT 1392284 Upstream 57bp
chr3 197712728 197712728 1 + G A UCEC 197712725 + 197712705 197712745 41 AGATGGAAATCCTCTCACTTCAAGATTTGCAGATGGCCTCC AGATGGAAATCCTCTCACTTCAAAATTTGCAGATGGCCTCC < 41bp 0.757875035060341 0.525025301321781 0.4045069 0.22544476 prediction 0.46569946747712 Functional Loss - LMLN ENSG00000185621 CDS Human protein_coding chr3:197712725 chr3:197712728 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_73166 0 0 0 0 1 LMLN chr3:197712761 5'GT 197712761 Upstream 34bp
chr17 40716853 40716853 1 + G A UCEC 40716850 + 40716830 40716870 41 TTGTCATTGACAGTGACCACCTGGGTCATCGGGCCTATGCC TTGTCATTGACAGTGACCACCTGAGTCATCGGGCCTATGCC < 41bp 0.780797258315179 0.54794982465633 0.7417244 0.35402238 prediction 0.465694867317699 Functional Loss - COASY ENSG00000068120 CDS Human protein_coding chr17:40716850 chr17:40716853 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_73168 0 0 1 0 1 COASY chr17:40716916 5'GT 40716916 Upstream 64bp
chr19 1918142 1918142 1 + C T COAD 1918140 + 1918120 1918160 41 TCGCAGTTTACTGCGCCACCCTCGGCGTCAACCTCATTGCC TCGCAGTTTACTGCGCCACCCTTGGCGTCAACCTCATTGCC < 41bp 0.732845491679392 0.463957195747707 0.21391243 0.105710715 prediction 0.465690983358784 Functional Loss - SCAMP4 ENSG00000227500 CDS Human protein_coding chr19:1918140 chr19:1918142 synonymous SNV . 0 23 hm5C_associated_SNPs_73172 0 0 1 0 1 SCAMP4 chr19:1918126 3'AG 1918126 Downstream 17bp
chr9 72520928 72520928 1 + C T rs138325359 72520926 + 72520906 72520946 41 AGAAAATGCCGTTCTCAGTTCACGGATCTAAATGGTTCTAA AGAAAATGCCGTTCTCAGTTCATGGATCTAAATGGTTCTAA < 41bp 0.799304438317047 0.566459204426845 0.17669314 0.16590273 prediction 0.465690467780404 Functional Loss - C9orf135 ENSG00000204711 CDS Human protein_coding chr9:72520926 chr9:72520928 nonsynonymous SNV 0.502 1 23 hm5C_associated_SNPs_73173 0 0 0 0 1 C9orf135 chr9:72520870 3'AG 72520870 Downstream 59bp
chr17 63223422 63223422 1 + C T UCEC 63223420 + 63223400 63223440 41 CAGATCAAAATGGATGTGCCCACGGGGAGCGGGACCTGCTT CAGATCAAAATGGATGTGCCCATGGGGAGCGGGACCTGCTT < 41bp 0.80222114865688 0.569380347923036 0.41658378 0.36218667 prediction 0.465681601467687 Functional Loss - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63223420 chr17:63223422 nonsynonymous SNV 0.110 0 23 hm5C_associated_SNPs_73175 0 0 0 0 1 RGS9 chr17:63223393 3'AG 63223393 Downstream 30bp
chr11 60102450 60102450 1 + G A GBM 60102447 + 60102427 60102467 41 ACTTCTCCCAAGCAGAGAAACCCGAACCCACCAACCAGGGG ACTTCTCCCAAGCAGAGAAACCCAAACCCACCAACCAGGGG < 41bp 0.73283508319372 0.499719789550696 0.07205811 0.035376668 prediction 0.465670166387439 Functional Loss - MS4A6E ENSG00000166926 CDS Human protein_coding chr11:60102447 chr11:60102450 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_73177 0 0 0 0 1 MS4A6E chr11:60102515 5'GT 60102515 Upstream 66bp
chr11 6292692 6292692 1 + C T UCEC 6292690 + 6292670 6292710 41 GAGCTCGCCCCAGGGCTCTTCCCGATGAGGACCCTCCCACT GAGCTCGCCCCAGGGCTCTTCCTGATGAGGACCCTCCCACT < 41bp 0.805661648584922 0.57283138480712 0.8967844 0.8776526 prediction 0.465660527555603 Functional Loss - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6292690 chr11:6292692 synonymous SNV . 0 23 hm5C_associated_SNPs_73180 0 0 0 0 1 CCKBR chr11:6292627 3'AG 6292627 Downstream 66bp
chr19 14582448 14582448 1 + C T LUSC 14582446 + 14582426 14582466 41 CTGCCACCGCCCTTTGTGCCCACGCTGTCCGGCCGCACCGA CTGCCACCGCCCTTTGTGCCCATGCTGTCCGGCCGCACCGA < 41bp 0.732821774734454 0.493741639946687 0.18337736 0.19232902 prediction 0.465643549468908 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14582446 chr19:14582448 nonsynonymous SNV 0.361 1 23 hm5C_associated_SNPs_73183 0 0 1 0 1 PKN1 chr19:14582393 3'AG 14582393 Downstream 56bp
chr2 103095699 103095699 1 + G A rs182965523 103095696 + 103095676 103095716 41 TAGCCGTGTTTGAGGAAGCGCGCGTGAACGAGCAGCTCTAC TAGCCGTGTTTGAGGAAGCGCGCATGAACGAGCAGCTCTAC < 41bp 0.764384000719261 0.531565554096759 0.8481294 0.5730891 prediction 0.465636893245003 Functional Loss - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103095696 chr2:103095699 nonsynonymous SNV 0.721 3 24 hm5C_associated_SNPs_73185 0 0 0 0 1 SLC9A4 chr2:103095761 5'GT 103095761 Upstream 63bp
chr22 40802205 40802205 1 + C T UCEC 40802203 + 40802183 40802223 41 TCCCGGGTGCTGTTCCAGCTCACGCTGGGCATGCTGCACCT TCCCGGGTGCTGTTCCAGCTCATGCTGGGCATGCTGCACCT < 41bp 0.818843170782732 0.586026878267728 0.18694934 0.20789346 prediction 0.465632585030009 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40802203 chr22:40802205 nonsynonymous SNV 0.482 1 23 hm5C_associated_SNPs_73187 0 0 1 0 1 SGSM3 chr22:40802227 5'GT 40802227 Upstream 23bp
chr12 3677987 3677987 1 + G A rs145976218 3677984 + 3677964 3678004 41 TTCTATGAGTCCATGCTCAACACGGTGATCTTTGCCAGGGA TTCTATGAGTCCATGCTCAACACAGTGATCTTTGCCAGGGA < 41bp 0.769845879233404 0.537030429219658 0.81555516 0.764057 prediction 0.465630900027493 Functional Loss - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3677984 chr12:3677987 synonymous SNV . 0 24 hm5C_associated_SNPs_73188 0 0 0 0 1 PRMT8 chr12:3678014 5'GT 3678014 Upstream 28bp
chr1 41285133 41285133 1 + T C UCEC 41285132 + 41285112 41285152 41 TCCTCCTACGCCGACTCGCTCTGGTGGGGGACGGTGCGTGA TCCTCCTACGCCGACTCGCTCCGGTGGGGGACGGTGCGTGA < 41bp 0.769416925211555 0.53660897483871 0.35579798 0.34702253 prediction 0.46561590074569 Functional Loss - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41285132 chr1:41285133 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_73193 1 0 0 0 1 KCNQ4 chr1:41285144 5'GT 41285144 Upstream 12bp
chr15 42092056 42092056 1 + T C LUSC 42092055 + 42092035 42092075 41 GGTGCTGGGAATTACAGTGTCTGGAGGCAGAGGACTTGCCT GGTGCTGGGAATTACAGTGTCCGGAGGCAGAGGACTTGCCT < 41bp 0.735194745449778 0.502392795027976 0.85438883 0.9103327 prediction 0.465603900843606 Functional Loss - MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42092055 chr15:42092056 synonymous SNV . 0 22 hm5C_associated_SNPs_73196 0 0 1 0 1 MAPKBP1 chr15:42092021 3'AG 42092021 Downstream 36bp
chr11 124740172 124740172 1 + A T LUSC 124740168 + 124740148 124740188 41 CCCCACCTCGTCTACGCTGGCGCAAGGAGGATGGGGAACTG CCCCACCTCGTCTACGCTGGCGCATGGAGGATGGGGAACTG < 41bp 0.732797283923712 0.399628749138878 0.7614846 0.74081355 prediction 0.465594567847424 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124740168 chr11:124740172 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_73199 0 0 0 0 1 ROBO3 chr11:124740199 5'GT 124740199 Upstream 28bp
chr20 24565534 24565534 1 + A C rs143078341 24565533 + 24565513 24565553 41 GAGAGTGAGGACAATTTCCTCATGATGCCCCCGCGGGACCA GAGAGTGAGGACAATTTCCTCCTGATGCCCCCGCGGGACCA < 41bp 0.732797174749089 0.475155417655145 0.26814082 0.23879406 prediction 0.465594349498178 Functional Loss - SYNDIG1 ENSG00000101463 CDS Human protein_coding chr20:24565533 chr20:24565534 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_73200 0 0 0 0 2 SYNDIG1 chr20:24565492 3'AG 24565492 Downstream 43bp
chr20 24565534 24565534 1 + A C rs143078341 24565533 + 24565513 24565553 41 GAGAGTGAGGACAATTTCCTCATGATGCCCCCGCGGGACCA GAGAGTGAGGACAATTTCCTCCTGATGCCCCCGCGGGACCA < 41bp 0.732797174749089 0.475155417655145 0.26814082 0.23879406 prediction 0.465594349498178 Functional Loss - SYNDIG1 ENSG00000101463 CDS Human protein_coding chr20:24565533 chr20:24565534 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_73200 0 0 0 0 2 SYNDIG1 chr20:24565629 5'GT 24565629 Upstream 96bp
chr19 578100 578100 1 + G A rs554365832 578097 + 578077 578117 41 GGGTCAAGTGGGTCCGCGCCCAGGCAGTCGTGCTAGTCCTG GGGTCAAGTGGGTCCGCGCCCAGACAGTCGTGCTAGTCCTG < 41bp 0.76365565783341 0.53085868181953 0.88837516 0.6038208 prediction 0.465593952027759 Functional Loss - BSG ENSG00000172270 CDS Human protein_coding chr19:578097 chr19:578100 nonsynonymous SNV 0.705 3 24 hm5C_associated_SNPs_73201 0 0 0 0 1 BSG chr19:578121 5'GT 578121 Upstream 22bp
chr10 43612057 43612057 1 + G A STAD 43612054 + 43612034 43612074 41 GGATCCAAAGTGGGAATTCCCTCGGAAGAACTTGGTTCTTG GGATCCAAAGTGGGAATTCCCTCAGAAGAACTTGGTTCTTG < 41bp 0.746680307061957 0.513884824006399 0.075849295 0.070774645 prediction 0.465590966111116 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43612054 chr10:43612057 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_73202 0 0 1 0 1 RET chr10:43612032 3'AG 43612032 Downstream 26bp
chr9 127637392 127637392 1 + G T COAD 127637390 + 127637370 127637410 41 TAAAGGCTTTGAGAAGCCCACAGAAAATAGCAGCGCAGTGT TAAAGGCTTTGAGAAGCCCACATAAAATAGCAGCGCAGTGT < 41bp 0.732793927341539 0.394878790835568 0.47644836 0.093247235 prediction 0.465587854683078 Functional Loss - ARPC5L ENSG00000136950 CDS Human protein_coding chr9:127637390 chr9:127637392 stopgain 1.000 1 23 hm5C_associated_SNPs_73203 0 0 1 0 1 ARPC5L chr9:127637430 5'GT 127637430 Upstream 39bp
chr16 10992553 10992553 1 + G A HNSC 10992550 + 10992530 10992570 41 AACTGGACCAGTATGTCTTCCAGGACTCCCAGCTGGAGGGC AACTGGACCAGTATGTCTTCCAGAACTCCCAGCTGGAGGGC < 41bp 0.774360838295965 0.5415681408269 0.44219288 0.30616808 prediction 0.465585394938131 Functional Loss - CIITA ENSG00000179583 CDS Human protein_coding chr16:10992550 chr16:10992553 nonsynonymous SNV 0.982 4 24 hm5C_associated_SNPs_73204 0 0 0 0 2 CIITA chr16:10992527 3'AG 10992527 Downstream 27bp
chr16 10992553 10992553 1 + G A HNSC 10992550 + 10992530 10992570 41 AACTGGACCAGTATGTCTTCCAGGACTCCCAGCTGGAGGGC AACTGGACCAGTATGTCTTCCAGAACTCCCAGCTGGAGGGC < 41bp 0.774360838295965 0.5415681408269 0.44219288 0.30616808 prediction 0.465585394938131 Functional Loss - CIITA ENSG00000179583 CDS Human protein_coding chr16:10992550 chr16:10992553 nonsynonymous SNV 0.982 4 24 hm5C_associated_SNPs_73204 0 0 0 0 2 CIITA chr16:10992589 5'GT 10992589 Upstream 37bp
chr20 57899426 57899426 1 + T C UCEC 57899425 + 57899405 57899445 41 AAAGCAAGCAGGCTTTAGACCTCCACCATCCAAAGCTCATG AAAGCAAGCAGGCTTTAGACCCCCACCATCCAAAGCTCATG < 41bp 0.732790623012244 0.491411496386885 0.81691474 0.044095397 prediction 0.465581246024488 Functional Loss - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57899425 chr20:57899426 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_73206 0 0 0 0 2 EDN3 chr20:57899382 3'AG 57899382 Downstream 45bp
chr20 57899426 57899426 1 + T C UCEC 57899425 + 57899405 57899445 41 AAAGCAAGCAGGCTTTAGACCTCCACCATCCAAAGCTCATG AAAGCAAGCAGGCTTTAGACCCCCACCATCCAAAGCTCATG < 41bp 0.732790623012244 0.491411496386885 0.81691474 0.044095397 prediction 0.465581246024488 Functional Loss - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57899425 chr20:57899426 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_73206 0 0 0 0 2 EDN3 chr20:57899386 3'AG 57899386 Downstream 41bp
chr4 83996452 83996452 1 + C T BLCA 83996450 + 83996430 83996470 41 TACATTTTTTTTCCCCTTAGCACGAGAAGCCCTGCCAACGT TACATTTTTTTTCCCCTTAGCATGAGAAGCCCTGCCAACGT < 41bp 0.79931179187766 0.566521481704136 0.34142286 0.41199133 prediction 0.465580620347047 Functional Loss - COPS4 ENSG00000138663 CDS Human protein_coding chr4:83996450 chr4:83996452 stopgain 0.898 1 23 hm5C_associated_SNPs_73207 0 0 1 0 1 COPS4 chr4:83996450 3'AG 83996450 Downstream 3bp
chr19 18685735 18685735 1 + C T SKCM 18685733 + 18685713 18685753 41 GTGGCATTATTGAGCCTTCTCTCCGCCAGCTTGCCCAGAAA GTGGCATTATTGAGCCTTCTCTTCGCCAGCTTGCCCAGAAA < 41bp 0.83522082408139 0.602430892158148 0.58955604 0.33871996 prediction 0.465579863846485 Functional Loss - UBA52 ENSG00000221983 CDS Human protein_coding chr19:18685733 chr19:18685735 synonymous SNV . 0 23 hm5C_associated_SNPs_73208 0 0 1 0 1 UBA52 chr19:18685782 5'GT 18685782 Upstream 48bp
chr7 34889213 34889213 1 + G T LUAD 34889211 + 34889191 34889231 41 AGGATTCCAGAATGACGTTCCGGGAGAGAACTGAGAGGCAT AGGATTCCAGAATGACGTTCCGTGAGAGAACTGAGAGGCAT < 41bp 0.732789437409742 0.410647468414799 0.72102857 0.27326274 prediction 0.465578874819484 Functional Loss - NPSR1 ENSG00000187258 CDS Human protein_coding chr7:34889211 chr7:34889213 stopgain 0.198 0 23 hm5C_associated_SNPs_73209 0 0 0 0 1 NPSR1 chr7:34889177 3'AG 34889177 Downstream 37bp
chrX 47063094 47063094 1 + C T UCEC 47063092 + 47063072 47063112 41 CTTTTCCGGCCCTGGGATGTCACGGTGAGTAGGGTAGGAGG CTTTTCCGGCCCTGGGATGTCATGGTGAGTAGGGTAGGAGG < 41bp 0.810355126551605 0.577565907449989 0.74130434 0.69762284 prediction 0.465578438203232 Functional Loss - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47063092 chrX:47063094 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_73210 0 0 1 0 1 UBA1 chrX:47063095 5'GT 47063095 Upstream 2bp
chr1 150234602 150234602 1 + G A UCEC 150234599 + 150234579 150234619 41 CCTGTATCTGGGTGGACTTCCCCGAAAATATGTAGCTGCCC CCTGTATCTGGGTGGACTTCCCCAAAAATATGTAGCTGCCC < 41bp 0.761560068671766 0.528780959567912 0.30601174 0.51384807 prediction 0.465558218207708 Functional Loss - CA14 ENSG00000118298 CDS Human protein_coding chr1:150234599 chr1:150234602 nonsynonymous SNV 0.904 0 24 hm5C_associated_SNPs_73216 0 0 0 0 2 CA14 chr1:150234557 3'AG 150234557 Downstream 46bp
chr1 150234602 150234602 1 + G A UCEC 150234599 + 150234579 150234619 41 CCTGTATCTGGGTGGACTTCCCCGAAAATATGTAGCTGCCC CCTGTATCTGGGTGGACTTCCCCAAAAATATGTAGCTGCCC < 41bp 0.761560068671766 0.528780959567912 0.30601174 0.51384807 prediction 0.465558218207708 Functional Loss - CA14 ENSG00000118298 CDS Human protein_coding chr1:150234599 chr1:150234602 nonsynonymous SNV 0.904 0 24 hm5C_associated_SNPs_73216 0 0 0 0 2 CA14 chr1:150234699 5'GT 150234699 Upstream 98bp
chr10 45480350 45480350 1 + G A rs35924448 45480347 + 45480327 45480367 41 GCCAGAGGAGGCCCAAGTGCCGCGCCCCCGGTGAGGCCCAG GCCAGAGGAGGCCCAAGTGCCGCACCCCCGGTGAGGCCCAG < 41bp 0.763180038764057 0.530406657945683 0.09359622 0.02991122 prediction 0.465546761636749 Functional Loss - RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45480347 chr10:45480350 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_73218 0 0 1 0 2 RASSF4 chr10:45480261 3'AG 45480261 Downstream 90bp
chr10 45480350 45480350 1 + G A rs35924448 45480347 + 45480327 45480367 41 GCCAGAGGAGGCCCAAGTGCCGCGCCCCCGGTGAGGCCCAG GCCAGAGGAGGCCCAAGTGCCGCACCCCCGGTGAGGCCCAG < 41bp 0.763180038764057 0.530406657945683 0.09359622 0.02991122 prediction 0.465546761636749 Functional Loss - RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45480347 chr10:45480350 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_73218 0 0 1 0 2 RASSF4 chr10:45480418 5'GT 45480418 Upstream 69bp
chr3 129221680 129221680 1 + C T SKCM 129221678 + 129221658 129221698 41 CCTACCTGAAGATGGGTGACCTCAAGTCCCTGGTGCAGCTG CCTACCTGAAGATGGGTGACCTTAAGTCCCTGGTGCAGCTG < 41bp 0.831256572828483 0.598486059034938 0.8929898 0.7619822 prediction 0.46554102758709 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129221678 chr3:129221680 synonymous SNV . 0 23 hm5C_associated_SNPs_73220 0 0 1 0 1 IFT122 chr3:129221725 5'GT 129221725 Upstream 46bp
chr11 10503720 10503720 1 + G T GBM 10503718 + 10503698 10503738 41 GCTTCCCGCGGATCACATCCCAGTACCTGGGTCATCCGCGG GCTTCCCGCGGATCACATCCCATTACCTGGGTCATCCGCGG < 41bp 0.732768421416421 0.373783875827362 0.49915656 0.11125544 prediction 0.465536842832841 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10503718 chr11:10503720 nonsynonymous SNV 0.961 2 23 hm5C_associated_SNPs_73221 0 0 0 0 1 AMPD3 chr11:10503772 5'GT 10503772 Upstream 53bp
chr6 27220676 27220676 1 + T C LIHC 27220675 + 27220655 27220695 41 GAGCACAGAACCTCAACTGTCTGGTGTGGGTGACCGGCAGT GAGCACAGAACCTCAACTGTCCGGTGTGGGTGACCGGCAGT < 41bp 0.750961113928224 0.518192881480395 0.481602 0.7019218 prediction 0.465536464895657 Functional Loss - PRSS16 ENSG00000112812 CDS Human protein_coding chr6:27220675 chr6:27220676 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_73222 0 0 1 0 1 PRSS16 chr6:27220587 3'AG 27220587 Downstream 90bp
chr2 233410318 233410318 1 + G A ESCA 233410315 + 233410295 233410335 41 GTCTGCTTCCTGGCCATGCTCTCGCTCTTCATCTGTGGCAC GTCTGCTTCCTGGCCATGCTCTCACTCTTCATCTGTGGCAC < 41bp 0.784400240436136 0.551635632472913 0.13525763 0.100286394 prediction 0.465529215926446 Functional Loss - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233410315 chr2:233410318 synonymous SNV . 0 24 hm5C_associated_SNPs_73225 0 0 0 0 1 CHRNG chr2:233410253 3'AG 233410253 Downstream 66bp
chr17 39847059 39847059 1 + T C ACC 39847058 + 39847038 39847078 41 GACTGGCTAAGGACGATCAGCTGAAGGTTCATGGGTTTTAA GACTGGCTAAGGACGATCAGCCGAAGGTTCATGGGTTTTAA < 41bp 0.732764331069758 0.49658881520227 0.7006889 0.4933964 prediction 0.465528662139516 Functional Loss - EIF1 ENSG00000173812 CDS Human protein_coding chr17:39847058 chr17:39847059 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_73226 0 0 1 0 1 EIF1 chr17:39847034 3'AG 39847034 Downstream 26bp
chr8 22960245 22960245 1 + G A rs546655349 22960242 + 22960222 22960262 41 CCGGAATCAAACCGCAGGCCCTGGGTCACCGCTGCCGGAAA CCGGAATCAAACCGCAGGCCCTGAGTCACCGCTGCCGGAAA < 41bp 0.751185958743442 0.518423265365343 0.51792157 0.30850142 prediction 0.4655253867562 Functional Loss - LOC254896 ENSG00000173535 UTR5 Human protein_coding chr8:22960242 chr8:22960245 . . 0 24 hm5C_associated_SNPs_73228 0 0 0 0 1 LOC254896 chr8:22960210 3'AG 22960210 Downstream 36bp
chr1 11594528 11594528 1 + G A SKCM 11594525 + 11594505 11594545 41 AGCAGCAGCTGCAGGCCTTGCCCGAGGGCTCAGTCCTGCGC AGCAGCAGCTGCAGGCCTTGCCCAAGGGCTCAGTCCTGCGC < 41bp 0.772906979712985 0.540145276548275 0.75472677 0.43737042 prediction 0.465523406329419 Functional Loss - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11594525 chr1:11594528 nonsynonymous SNV 0.536 2 24 hm5C_associated_SNPs_73230 0 0 0 0 1 DISP3 chr1:11594438 3'AG 11594438 Downstream 91bp
chr3 13660436 13660436 1 + G A SKCM 13660433 + 13660413 13660453 41 CTCCACAGCCGGAAGCCCCACAGGAGCCTGCACTGAAGTCA CTCCACAGCCGGAAGCCCCACAGAAGCCTGCACTGAAGTCA < 41bp 0.786986144568026 0.554225279444953 0.72031343 0.31966949 prediction 0.465521730246145 Functional Loss - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13660433 chr3:13660436 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_73232 0 0 0 0 2 FBLN2 chr3:13660404 3'AG 13660404 Downstream 33bp
chr3 13660436 13660436 1 + G A SKCM 13660433 + 13660413 13660453 41 CTCCACAGCCGGAAGCCCCACAGGAGCCTGCACTGAAGTCA CTCCACAGCCGGAAGCCCCACAGAAGCCTGCACTGAAGTCA < 41bp 0.786986144568026 0.554225279444953 0.72031343 0.31966949 prediction 0.465521730246145 Functional Loss - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13660433 chr3:13660436 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_73232 0 0 0 0 2 FBLN2 chr3:13660517 5'GT 13660517 Upstream 82bp
chr1 16070707 16070707 1 + C T LGG 16070705 + 16070685 16070725 41 CTCTACCTGCTGTGCCAGTACTCGCTGGGCTGCGGGCTGAC CTCTACCTGCTGTGCCAGTACTTGCTGGGCTGCGGGCTGAC < 41bp 0.732760036102442 0.461635906734642 0.34289414 0.26148883 prediction 0.465520072204884 Functional Loss - TMEM82 ENSG00000162460 CDS Human protein_coding chr1:16070705 chr1:16070707 nonsynonymous SNV 0.993 3 23 hm5C_associated_SNPs_73234 0 0 0 0 1 TMEM82 chr1:16070655 3'AG 16070655 Downstream 53bp
chr1 193053764 193053764 1 + C T SKCM 193053762 + 193053742 193053782 41 GGAATGACATCAAATGGTTTCACCATTGCAGACCCAGATGA GGAATGACATCAAATGGTTTCATCATTGCAGACCCAGATGA < 41bp 0.732758328460571 0.451338015199757 0.051662713 0.055033237 prediction 0.465516656921141 Functional Loss - TROVE2 ENSG00000116747 CDS Human protein_coding chr1:193053762 chr1:193053764 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_73235 0 0 1 0 2 TROVE2 chr1:193053709 3'AG 193053709 Downstream 56bp
chr1 193053764 193053764 1 + C T SKCM 193053762 + 193053742 193053782 41 GGAATGACATCAAATGGTTTCACCATTGCAGACCCAGATGA GGAATGACATCAAATGGTTTCATCATTGCAGACCCAGATGA < 41bp 0.732758328460571 0.451338015199757 0.051662713 0.055033237 prediction 0.465516656921141 Functional Loss - TROVE2 ENSG00000116747 CDS Human protein_coding chr1:193053762 chr1:193053764 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_73235 0 0 1 0 2 TROVE2 chr1:193053828 5'GT 193053828 Upstream 65bp
chr16 68721547 68721547 1 + C T UCEC 68721545 + 68721525 68721565 41 GTGCGCCAGGTGCTGAACATCACGGACAAGGACCTGTCTCC GTGCGCCAGGTGCTGAACATCATGGACAAGGACCTGTCTCC < 41bp 0.831262731599045 0.598509039602261 0.37228954 0.53566885 prediction 0.465507383993569 Functional Loss - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68721545 chr16:68721547 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_73238 0 0 0 0 1 CDH3 chr16:68721639 5'GT 68721639 Upstream 93bp
chr16 334923 334923 1 + G A SKCM 334920 + 334900 334940 41 CCACCTTCTTGGCCTTGGCCCAGGACGCCCTGGACATGACC CCACCTTCTTGGCCTTGGCCCAGAACGCCCTGGACATGACC < 41bp 0.732751155510433 0.485473207103795 0.8767421 0.22038323 prediction 0.465502311020865 Functional Loss - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:334920 chr16:334923 nonsynonymous SNV 0.278 0 24 hm5C_associated_SNPs_73242 0 0 0 0 2 PDIA2 chr16:334878 3'AG 334878 Downstream 46bp
chr16 334923 334923 1 + G A SKCM 334920 + 334900 334940 41 CCACCTTCTTGGCCTTGGCCCAGGACGCCCTGGACATGACC CCACCTTCTTGGCCTTGGCCCAGAACGCCCTGGACATGACC < 41bp 0.732751155510433 0.485473207103795 0.8767421 0.22038323 prediction 0.465502311020865 Functional Loss - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:334920 chr16:334923 nonsynonymous SNV 0.278 0 24 hm5C_associated_SNPs_73242 0 0 0 0 2 PDIA2 chr16:335015 5'GT 335015 Upstream 93bp
chr3 184009934 184009934 1 + G A BLCA 184009931 + 184009911 184009951 41 GCCCTGCCCGCTTCCGCGTGCTGGGCACTCTCTCCAACTCC GCCCTGCCCGCTTCCGCGTGCTGAGCACTCTCTCCAACTCC < 41bp 0.7516712694345 0.518924808383003 0.3450917 0.24949813 prediction 0.465492922102994 Functional Loss - ECE2 ENSG00000145194 CDS Human protein_coding chr3:184009931 chr3:184009934 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_73245 0 0 0 0 1 ECE2 chr3:184009850 3'AG 184009850 Downstream 85bp
chr22 25301148 25301148 1 + G A SKCM 25301145 + 25301125 25301165 41 TGGCTCCACTGCTGGTCATTCTGGATGATGGTGAGTGTGTC TGGCTCCACTGCTGGTCATTCTGAATGATGGTGAGTGTGTC < 41bp 0.748869933592336 0.516123678806169 0.27306715 0.2172449 prediction 0.465492509572334 Functional Loss - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25301145 chr22:25301148 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_73246 0 0 0 0 2 SGSM1 chr22:25301072 3'AG 25301072 Downstream 77bp
chr22 25301148 25301148 1 + G A SKCM 25301145 + 25301125 25301165 41 TGGCTCCACTGCTGGTCATTCTGGATGATGGTGAGTGTGTC TGGCTCCACTGCTGGTCATTCTGAATGATGGTGAGTGTGTC < 41bp 0.748869933592336 0.516123678806169 0.27306715 0.2172449 prediction 0.465492509572334 Functional Loss - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25301145 chr22:25301148 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_73246 0 0 0 0 2 SGSM1 chr22:25301154 5'GT 25301154 Upstream 7bp
chr11 76834804 76834804 1 + T C BLCA 76834803 + 76834783 76834823 41 TAAAGGCTGACCCGGACAACCTCCAGGCCCTGCATACCCTC TAAAGGCTGACCCGGACAACCCCCAGGCCCTGCATACCCTC < 41bp 0.827362070360316 0.594615855518953 0.96762586 0.32925037 prediction 0.465492429682727 Functional Loss - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76834803 chr11:76834804 nonsynonymous SNV 0.880 0 22 hm5C_associated_SNPs_73247 0 0 0 0 1 CAPN5 chr11:76834734 3'AG 76834734 Downstream 71bp
chr2 3743381 3743381 1 + G T LUSC 3743379 + 3743359 3743399 41 TGCAACTGACCCCAAAGAACCTGCAGACCTAGTGGCCATCG TGCAACTGACCCCAAAGAACCTTCAGACCTAGTGGCCATCG < 41bp 0.76122935976798 0.528489380312591 0.38676482 0.39283216 prediction 0.465479958910776 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3743379 chr2:3743381 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_73248 0 0 0 0 2 ALLC chr2:3743307 3'AG 3743307 Downstream 75bp
chr2 3743381 3743381 1 + G T LUSC 3743379 + 3743359 3743399 41 TGCAACTGACCCCAAAGAACCTGCAGACCTAGTGGCCATCG TGCAACTGACCCCAAAGAACCTTCAGACCTAGTGGCCATCG < 41bp 0.76122935976798 0.528489380312591 0.38676482 0.39283216 prediction 0.465479958910776 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3743379 chr2:3743381 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_73248 0 0 0 0 2 ALLC chr2:3743462 5'GT 3743462 Upstream 82bp
chr1 11896114 11896114 1 + G A rs368128231 11896111 + 11896091 11896131 41 CTGGTGAGCATCCTGCGCACCACGGTCCACCATGCCTTCCC CTGGTGAGCATCCTGCGCACCACAGTCCACCATGCCTTCCC < 41bp 0.761369013747868 0.52863438915168 0.03539124 0.020571947 prediction 0.465469249192376 Functional Loss - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11896111 chr1:11896114 synonymous SNV . 0 24 hm5C_associated_SNPs_73251 0 0 1 0 2 CLCN6 chr1:11896024 3'AG 11896024 Downstream 91bp
chr1 11896114 11896114 1 + G A rs368128231 11896111 + 11896091 11896131 41 CTGGTGAGCATCCTGCGCACCACGGTCCACCATGCCTTCCC CTGGTGAGCATCCTGCGCACCACAGTCCACCATGCCTTCCC < 41bp 0.761369013747868 0.52863438915168 0.03539124 0.020571947 prediction 0.465469249192376 Functional Loss - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11896111 chr1:11896114 synonymous SNV . 0 24 hm5C_associated_SNPs_73251 0 0 1 0 2 CLCN6 chr1:11896210 5'GT 11896210 Upstream 97bp
chr16 816776 816776 1 + G A rs564316342 816773 + 816753 816793 41 GGTACCTGTGCTCCCTCAGCCCCGAGGAGCTGAGCTCCGTG GGTACCTGTGCTCCCTCAGCCCCAAGGAGCTGAGCTCCGTG < 41bp 0.732731018202098 0.48718094692973 0.098674804 0.12611419 prediction 0.465462036404195 Functional Loss - MSLN ENSG00000102854 CDS Human protein_coding chr16:816773 chr16:816776 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_73253 0 0 0 0 1 MSLN chr16:816810 5'GT 816810 Upstream 35bp
chr17 79073865 79073865 1 + G A CESC 79073862 + 79073842 79073882 41 TGCGCCGTGGCCAAGAACTCCGCGGCCTACCACTCCAAGGT TGCGCCGTGGCCAAGAACTCCGCAGCCTACCACTCCAAGGT < 41bp 0.764865918419018 0.53214018810928 0.88551056 0.80952215 prediction 0.465451460619477 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79073862 chr17:79073865 synonymous SNV . 0 24 hm5C_associated_SNPs_73254 0 0 1 0 1 BAIAP2 chr17:79073880 5'GT 79073880 Upstream 16bp
chr6 33636907 33636907 1 + C T rs2077163 33636905 + 33636885 33636925 41 AGGCGCGGGCCGGCAACGCCCACGACGAGAATGTGCTCAGC AGGCGCGGGCCGGCAACGCCCATGACGAGAATGTGCTCAGC < 41bp 0.789468861753599 0.556743815518998 0.24566266 0.3531308 prediction 0.465450092469202 Functional Loss - ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33636905 chr6:33636907 synonymous SNV . 0 23 hm5C_associated_SNPs_73255 0 0 1 0 1 ITPR3 chr6:33636933 5'GT 33636933 Upstream 27bp
chr11 32611116 32611116 1 + G T UCEC 32611113 + 32611093 32611133 41 GTTAGAAAATGGATTTCTGACTGGAATCTCACCACTGAAAA GTTAGAAAATGGATTTCTGACTGTAATCTCACCACTGAAAA < 41bp 0.905861682357903 0.673138712561507 0.2079812 0.16131279 prediction 0.465445939592791 Functional Loss - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32611113 chr11:32611116 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_73256 0 0 1 0 2 EIF3M chr11:32611093 3'AG 32611093 Downstream 24bp
chr11 32611116 32611116 1 + G T UCEC 32611113 + 32611093 32611133 41 GTTAGAAAATGGATTTCTGACTGGAATCTCACCACTGAAAA GTTAGAAAATGGATTTCTGACTGTAATCTCACCACTGAAAA < 41bp 0.905861682357903 0.673138712561507 0.2079812 0.16131279 prediction 0.465445939592791 Functional Loss - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32611113 chr11:32611116 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_73256 0 0 1 0 2 EIF3M chr11:32611187 5'GT 32611187 Upstream 72bp
chr11 122738147 122738147 1 + G T GBM 122738144 + 122738124 122738164 41 TCCTCAGTATTTAGGACTGGCAAGAAAGAAAAGTGGCATCC TCCTCAGTATTTAGGACTGGCAATAAAGAAAAGTGGCATCC < 41bp 0.732721591549843 0.347035772555551 0.25304037 0.07337269 prediction 0.465443183099686 Functional Loss - CRTAM ENSG00000109943 CDS Human protein_coding chr11:122738144 chr11:122738147 nonsynonymous SNV 0.445 1 24 hm5C_associated_SNPs_73257 0 0 0 0 1 CRTAM chr11:122738117 3'AG 122738117 Downstream 31bp
chr17 16327045 16327045 1 + G A UCEC 16327042 + 16327022 16327062 41 ATCCGCAACCTGCAGGATCTCACGCCTCTGAAGCTGGCCGC ATCCGCAACCTGCAGGATCTCACACCTCTGAAGCTGGCCGC < 41bp 0.780231500220072 0.547511728096163 0.29344612 0.30163777 prediction 0.465439544247817 Functional Loss - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16327042 chr17:16327045 synonymous SNV . 0 24 hm5C_associated_SNPs_73258 0 0 0 0 1 TRPV2 chr17:16327081 5'GT 16327081 Upstream 37bp
chr20 58567482 58567482 1 + T C UCEC 58567481 + 58567461 58567501 41 TGGGTCAGCGTCGACAAAAACTCCGGAGTGGTCATCACCGT TGGGTCAGCGTCGACAAAAACCCCGGAGTGGTCATCACCGT < 41bp 0.798488216418326 0.565770393305028 0.31047717 0.27841944 prediction 0.465435646226596 Functional Loss - CDH26 ENSG00000124215 CDS Human protein_coding chr20:58567481 chr20:58567482 nonsynonymous SNV 0.003 2 22 hm5C_associated_SNPs_73260 0 0 0 0 2 CDH26 chr20:58567433 3'AG 58567433 Downstream 50bp
chr20 58567482 58567482 1 + T C UCEC 58567481 + 58567461 58567501 41 TGGGTCAGCGTCGACAAAAACTCCGGAGTGGTCATCACCGT TGGGTCAGCGTCGACAAAAACCCCGGAGTGGTCATCACCGT < 41bp 0.798488216418326 0.565770393305028 0.31047717 0.27841944 prediction 0.465435646226596 Functional Loss - CDH26 ENSG00000124215 CDS Human protein_coding chr20:58567481 chr20:58567482 nonsynonymous SNV 0.003 2 22 hm5C_associated_SNPs_73260 0 0 0 0 2 CDH26 chr20:58567575 5'GT 58567575 Upstream 94bp
chr5 131647907 131647907 1 - C G LUAD 131647911 - 131647891 131647931 41 GGAGCCGAGGAGCACGCCTACGAAGAACAGGGAGGTGGTGA GGAGCCGAGGAGCACGCCTACGAACAACAGGGAGGTGGTGA < 41bp 0.732714093598493 0.433703825502259 0.3436829 0.23795798 prediction 0.465428187196985 Functional Loss - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131647911 chr5:131647907 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_73263 0 0 0 0 1 SLC22A4 chr5:131647946 3'AG 131647946 Downstream 40bp
chr3 46939378 46939378 1 + T C UCEC 46939377 + 46939357 46939397 41 TGCCGGAATGGGACCACATCCTGTGCTGGCCGCTGGGGGCA TGCCGGAATGGGACCACATCCCGTGCTGGCCGCTGGGGGCA < 41bp 0.776811059972973 0.544101570365943 0.314591 0.30948374 prediction 0.46541897921406 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46939377 chr3:46939378 nonsynonymous SNV 0.980 1 22 hm5C_associated_SNPs_73266 0 0 0 0 2 PTH1R chr3:46939345 3'AG 46939345 Downstream 34bp
chr3 46939378 46939378 1 + T C UCEC 46939377 + 46939357 46939397 41 TGCCGGAATGGGACCACATCCTGTGCTGGCCGCTGGGGGCA TGCCGGAATGGGACCACATCCCGTGCTGGCCGCTGGGGGCA < 41bp 0.776811059972973 0.544101570365943 0.314591 0.30948374 prediction 0.46541897921406 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46939377 chr3:46939378 nonsynonymous SNV 0.980 1 22 hm5C_associated_SNPs_73266 0 0 0 0 2 PTH1R chr3:46939455 5'GT 46939455 Upstream 78bp
chr19 39868164 39868164 1 + G T BLCA 39868161 + 39868141 39868181 41 GGAACCTACGAAACGCTCTGCAGGAGCTGCAGCAGATCATC GGAACCTACGAAACGCTCTGCAGTAGCTGCAGCAGATCATC < 41bp 0.732708500417122 0.324830676454853 0.68312085 0.2279371 prediction 0.465417000834245 Functional Loss - SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39868161 chr19:39868164 stopgain 1.000 1 24 hm5C_associated_SNPs_73267 0 0 1 0 1 SAMD4B chr19:39868125 3'AG 39868125 Downstream 40bp
chr19 4284824 4284824 1 + G T BRCA 4284821 + 4284801 4284841 41 GAGAGGACTCCAGGCTCAGCCAAGGAGCTCCGGAGACCTCC GAGAGGACTCCAGGCTCAGCCAATGAGCTCCGGAGACCTCC < 41bp 0.7327055775045 0.334820093629732 0.86674887 0.42944905 prediction 0.465411155009001 Functional Loss - SHD ENSG00000105251 CDS Human protein_coding chr19:4284821 chr19:4284824 nonsynonymous SNV 0.873 1 24 hm5C_associated_SNPs_73268 0 0 0 0 2 SHD chr19:4284778 3'AG 4284778 Downstream 47bp
chr19 4284824 4284824 1 + G T BRCA 4284821 + 4284801 4284841 41 GAGAGGACTCCAGGCTCAGCCAAGGAGCTCCGGAGACCTCC GAGAGGACTCCAGGCTCAGCCAATGAGCTCCGGAGACCTCC < 41bp 0.7327055775045 0.334820093629732 0.86674887 0.42944905 prediction 0.465411155009001 Functional Loss - SHD ENSG00000105251 CDS Human protein_coding chr19:4284821 chr19:4284824 nonsynonymous SNV 0.873 1 24 hm5C_associated_SNPs_73268 0 0 0 0 2 SHD chr19:4284901 5'GT 4284901 Upstream 78bp
chr9 92220393 92220393 1 + C T ACC 92220391 + 92220371 92220411 41 GCATGAGTTGCTGCTGTCGGCGCAGCGTCAGGGCTGCCTCA GCATGAGTTGCTGCTGTCGGCGTAGCGTCAGGGCTGCCTCA < 41bp 0.732705547334799 0.489918401857388 0.54744613 0.46234974 prediction 0.465411094669598 Functional Loss - GADD45G ENSG00000130222 CDS Human protein_coding chr9:92220391 chr9:92220393 stopgain 0.982 1 23 hm5C_associated_SNPs_73269 0 0 0 0 2 GADD45G chr9:92220347 3'AG 92220347 Downstream 47bp
chr9 92220393 92220393 1 + C T ACC 92220391 + 92220371 92220411 41 GCATGAGTTGCTGCTGTCGGCGCAGCGTCAGGGCTGCCTCA GCATGAGTTGCTGCTGTCGGCGTAGCGTCAGGGCTGCCTCA < 41bp 0.732705547334799 0.489918401857388 0.54744613 0.46234974 prediction 0.465411094669598 Functional Loss - GADD45G ENSG00000130222 CDS Human protein_coding chr9:92220391 chr9:92220393 stopgain 0.982 1 23 hm5C_associated_SNPs_73269 0 0 0 0 2 GADD45G chr9:92220448 5'GT 92220448 Upstream 56bp
chr21 35772104 35772104 1 + G T COAD 35772101 + 35772081 35772121 41 ATCCTCCACCACTTTGCCGACAAGGAAGGAAGGACAATCGG ATCCTCCACCACTTTGCCGACAATGAAGGAAGGACAATCGG < 41bp 0.732704854415341 0.337917327183111 0.2628378 0.1266098 prediction 0.465409708830681 Functional Loss - C21orf140 ENSG00000205670 CDS Human protein_coding chr21:35772101 chr21:35772104 nonsynonymous SNV 0.012 0 24 hm5C_associated_SNPs_73270 0 0 0 0 2 C21orf140 chr21:35772009 3'AG 35772009 Downstream 96bp
chr21 35772104 35772104 1 + G T COAD 35772101 + 35772081 35772121 41 ATCCTCCACCACTTTGCCGACAAGGAAGGAAGGACAATCGG ATCCTCCACCACTTTGCCGACAATGAAGGAAGGACAATCGG < 41bp 0.732704854415341 0.337917327183111 0.2628378 0.1266098 prediction 0.465409708830681 Functional Loss - C21orf140 ENSG00000205670 CDS Human protein_coding chr21:35772101 chr21:35772104 nonsynonymous SNV 0.012 0 24 hm5C_associated_SNPs_73270 0 0 0 0 2 C21orf140 chr21:35772197 5'GT 35772197 Upstream 94bp
chr7 99707866 99707866 1 + G A BRCA 99707863 + 99707843 99707883 41 AGCCTGCGATGGAGCCATAACGAGTCGTCCAGGGCGTCTTC AGCCTGCGATGGAGCCATAACGAATCGTCCAGGGCGTCTTC < 41bp 0.765790111087851 0.533086886624929 0.33581758 0.09450045 prediction 0.465406448925844 Functional Loss - TAF6 ENSG00000106290;ENSG00000221838 CDS Human protein_coding chr7:99707863 chr7:99707866 nonsynonymous SNV 0.969 2 24 hm5C_associated_SNPs_73271 0 0 0 0 1 TAF6 chr7:99707814 3'AG 99707814 Downstream 53bp
chr2 69046429 69046429 1 + G A SKCM 69046426 + 69046406 69046446 41 CACTGAAGACCTCCGAATTTCTAGGACAGACAGCTTCAGTA CACTGAAGACCTCCGAATTTCTAAGACAGACAGCTTCAGTA < 41bp 0.774531171135686 0.541835662780843 0.048242718 0.055658966 prediction 0.465391016709686 Functional Loss - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69046426 chr2:69046429 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_73273 0 0 0 0 1 ARHGAP25 chr2:69046451 5'GT 69046451 Upstream 23bp
chr19 22817252 22817252 1 + A T LUSC 22817248 + 22817228 22817268 41 TGGGAGATCCACAGCTAAGACGCTAGGACCCCCTGGAAGCC TGGGAGATCCACAGCTAAGACGCTTGGACCCCCTGGAAGCC < 41bp 0.732691733718861 0.451828959428027 0.38449132 0.2424714 prediction 0.465383467437723 Functional Loss - ZNF492 ENSG00000229676 UTR5 Human protein_coding chr19:22817248 chr19:22817252 . . 0 25 hm5C_associated_SNPs_73274 0 0 0 0 1 ZNF492 chr19:22817276 5'GT 22817276 Upstream 25bp
chr2 120388245 120388245 1 + G A rs200947466 120388242 + 120388222 120388262 41 AGCTTGCCCGAGCCCTAAAGCAAGGAGCTGAGGTAACACAC AGCTTGCCCGAGCCCTAAAGCAAAGAGCTGAGGTAACACAC < 41bp 0.756892733037777 0.524201818534604 0.91572344 0.27718607 prediction 0.465381829006347 Functional Loss - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120388242 chr2:120388245 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_73276 0 0 0 0 2 CFAP221 chr2:120388146 3'AG 120388146 Downstream 100bp
chr2 120388245 120388245 1 + G A rs200947466 120388242 + 120388222 120388262 41 AGCTTGCCCGAGCCCTAAAGCAAGGAGCTGAGGTAACACAC AGCTTGCCCGAGCCCTAAAGCAAAGAGCTGAGGTAACACAC < 41bp 0.756892733037777 0.524201818534604 0.91572344 0.27718607 prediction 0.465381829006347 Functional Loss - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120388242 chr2:120388245 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_73276 0 0 0 0 2 CFAP221 chr2:120388253 5'GT 120388253 Upstream 9bp
chr17 34854983 34854983 1 - C T UCEC 34854986 - 34854966 34855006 41 AGCCATTCGTTCCTGGTTAACTCGGAAACACATCCAGAGGC AGCCATTCGTTCCTGGTTAACTCAGAAACACATCCAGAGGC < 41bp 0.732690904536968 0.494395787257949 0.22625437 0.18577391 prediction 0.465381809073936 Functional Loss - MYO19 ENSG00000141140 CDS Human other chr17:34854986 chr17:34854983 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_73277 0 0 1 0 1 MYO19 chr17:34855004 3'AG 34855004 Downstream 22bp
chrX 48682632 48682632 1 + A T HNSC 48682628 + 48682608 48682648 41 GCTCCAACACCATGGAAATTCTGGACACCCGCTGGTCCTCA GCTCCAACACCATGGAAATTCTGGTCACCCGCTGGTCCTCA < 41bp 0.882335270062215 0.649649482418824 0.17023832 0.07821432 prediction 0.465371575286781 Functional Loss - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48682628 chrX:48682632 synonymous SNV . 0 25 hm5C_associated_SNPs_73279 0 0 0 0 2 HDAC6 chrX:48682576 3'AG 48682576 Downstream 57bp
chrX 48682632 48682632 1 + A T HNSC 48682628 + 48682608 48682648 41 GCTCCAACACCATGGAAATTCTGGACACCCGCTGGTCCTCA GCTCCAACACCATGGAAATTCTGGTCACCCGCTGGTCCTCA < 41bp 0.882335270062215 0.649649482418824 0.17023832 0.07821432 prediction 0.465371575286781 Functional Loss - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48682628 chrX:48682632 synonymous SNV . 0 25 hm5C_associated_SNPs_73279 0 0 0 0 2 HDAC6 chrX:48682704 5'GT 48682704 Upstream 73bp
chr10 118960781 118960781 1 + C T THCA 118960779 + 118960759 118960799 41 AGCTCGCTCTTTTTCTGCTGCACGGTGTTCAGCACCGTGGG AGCTCGCTCTTTTTCTGCTGCATGGTGTTCAGCACCGTGGG < 41bp 0.8089379609176 0.576252357273636 0.20806989 0.24659055 prediction 0.465371207287927 Functional Loss - KCNK18 ENSG00000186795 CDS Human protein_coding chr10:118960779 chr10:118960781 nonsynonymous SNV 0.983 4 23 hm5C_associated_SNPs_73280 0 0 0 0 1 KCNK18 chr10:118960798 5'GT 118960798 Upstream 18bp
chr20 49197898 49197898 1 + C T UCEC 49197896 + 49197876 49197916 41 CCAAAGGGGAGCCGTCACTGCCCGAGAAGGACGAGGACCAT CCAAAGGGGAGCCGTCACTGCCTGAGAAGGACGAGGACCAT < 41bp 0.823424349889236 0.590740992808825 0.3298102 0.27624547 prediction 0.465366714160821 Functional Loss - PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49197896 chr20:49197898 synonymous SNV . 0 23 hm5C_associated_SNPs_73281 0 0 1 0 1 PTPN1 chr20:49197802 3'AG 49197802 Downstream 97bp
chr16 56677911 56677911 1 + A C ESCA 56677910 + 56677890 56677930 41 GCCCGGCTGCAGGTCACCCTCAAGGCCAAAGGTGTGCTGAA GCCCGGCTGCAGGTCACCCTCCAGGCCAAAGGTGTGCTGAA < 41bp 0.759809770394576 0.527133377255605 0.9284018 0.913147 prediction 0.465352786277943 Functional Loss - MT1DP ENSG00000205361 ncRNA_intronic Human transcribed_unprocessed_pseudogene chr16:56677910 chr16:56677911 . . 0 22 hm5C_associated_SNPs_73283 0 0 0 0 1 MT1DP chr16:56677920 5'GT 56677920 Upstream 10bp
chr16 90001180 90001180 1 + G A UCEC 90001177 + 90001157 90001197 41 AACTGGGCCAAGGGTCACTACACGGAGGGGGCGGAGCTGGT AACTGGGCCAAGGGTCACTACACAGAGGGGGCGGAGCTGGT < 41bp 0.758595602192812 0.525920388999287 0.8702992 0.40699703 prediction 0.465350426387051 Functional Loss - TUBB3 ENSG00000198211;ENSG00000258947 CDS Human other chr16:90001177 chr16:90001180 synonymous SNV . 0 24 hm5C_associated_SNPs_73285 0 0 1 0 1 TUBB3 chr16:90001137 3'AG 90001137 Downstream 44bp
chr17 38420784 38420784 1 + G A UCEC 38420781 + 38420761 38420801 41 AGCCCTGCAAATCCCCAGTTCTCGAGCTGCTGCCCCAAGGC AGCCCTGCAAATCCCCAGTTCTCAAGCTGCTGCCCCAAGGC < 41bp 0.778545087210449 0.545876360200302 0.2974146 0.06298819 prediction 0.465337454020294 Functional Loss - WIPF2 ENSG00000171475 CDS Human protein_coding chr17:38420781 chr17:38420784 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_73287 0 0 0 0 1 WIPF2 chr17:38420742 3'AG 38420742 Downstream 43bp
chr19 46172841 46172841 1 + G A BLCA 46172838 + 46172818 46172858 41 TCACTGTGCGGGCTGCTGCTCCAGAGGGCGGAGGTGAGGAA TCACTGTGCGGGCTGCTGCTCCAAAGGGCGGAGGTGAGGAA < 41bp 0.77697116945047 0.54430594758178 0.89261264 0.7421314 prediction 0.465330443737379 Functional Loss - GIPR ENSG00000010310 CDS Human protein_coding chr19:46172838 chr19:46172841 synonymous SNV . 0 24 hm5C_associated_SNPs_73288 0 0 0 0 1 GIPR chr19:46172850 5'GT 46172850 Upstream 10bp
chr3 38163826 38163826 1 + G A SKCM 38163823 + 38163803 38163843 41 CGATGGTGGTGGAAGGTGTGCTCGGTGAGAAGTCCTGCACC CGATGGTGGTGGAAGGTGTGCTCAGTGAGAAGTCCTGCACC < 41bp 0.76071532860325 0.528054193223613 0.38367027 0.34493494 prediction 0.465322270759274 Functional Loss - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38163823 chr3:38163826 nonsynonymous SNV 0.752 1 24 hm5C_associated_SNPs_73290 0 0 0 0 1 DLEC1 chr3:38163780 3'AG 38163780 Downstream 47bp
chr12 40799939 40799939 1 + G T rs191833812 40799936 + 40799916 40799956 41 AAGACAAGTCCAGACAACGTCAGGATGCTGGGAGTCCAAAG AAGACAAGTCCAGACAACGTCAGTATGCTGGGAGTCCAAAG < 41bp 0.7326597182124 0.379939866244722 0.6048658 0.2699229 prediction 0.465319436424799 Functional Loss - MUC19 ENSG00000258167 ncRNA_intronic Human antisense chr12:40799936 chr12:40799939 . . 0 24 hm5C_associated_SNPs_73292 0 0 0 0 2 MUC19 chr12:40799955 5'GT 40799955 Upstream 17bp
chr12 40799939 40799939 1 + G T rs191833812 40799936 + 40799916 40799956 41 AAGACAAGTCCAGACAACGTCAGGATGCTGGGAGTCCAAAG AAGACAAGTCCAGACAACGTCAGTATGCTGGGAGTCCAAAG < 41bp 0.7326597182124 0.379939866244722 0.6048658 0.2699229 prediction 0.465319436424799 Functional Loss - MUC19 ENSG00000258167 ncRNA_intronic Human antisense chr12:40799936 chr12:40799939 . . 0 24 hm5C_associated_SNPs_73292 0 0 0 0 2 MUC19 chr12:40799975 5'GT 40799975 Upstream 37bp
chr11 60702140 60702140 1 + C T SKCM 60702138 + 60702118 60702158 41 GGCTGCTAGACGTGTCCCACCTCGTGGCGCCACACGCCCGC GGCTGCTAGACGTGTCCCACCTTGTGGCGCCACACGCCCGC < 41bp 0.732656791183975 0.494071843051949 0.12254375 0.07903114 prediction 0.465313582367951 Functional Loss - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60702138 chr11:60702140 synonymous SNV . 0 23 hm5C_associated_SNPs_73293 0 0 0 0 1 TMEM132A chr11:60702236 5'GT 60702236 Upstream 97bp
chr16 14960520 14960520 1 + G C BLCA 14960516 + 14960496 14960536 41 TCAGGCAGACGGGCTACATGCTGAGATGTTCCCTGTCTCAC TCAGGCAGACGGGCTACATGCTGACATGTTCCCTGTCTCAC < 41bp 0.732651961488467 0.4336278572712 0.3373828 0.14266148 prediction 0.465303922976935 Functional Loss - NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14960516 chr16:14960520 nonsynonymous SNV 0.963 1 25 hm5C_associated_SNPs_73294 0 0 0 0 1 NOMO1 chr16:14960548 5'GT 14960548 Upstream 29bp
chr14 67790521 67790521 1 + A T OV 67790517 + 67790497 67790537 41 GCATTATTGGCCAAAGAAGGCAAGAATCCAAAGGTAAAGTT GCATTATTGGCCAAAGAAGGCAAGTATCCAAAGGTAAAGTT < 41bp 0.732646429975088 0.411306254007265 0.59801596 0.26057583 prediction 0.465292859950176 Functional Loss - MPP5 ENSG00000072415 CDS Human protein_coding chr14:67790517 chr14:67790521 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_73296 0 0 0 0 1 MPP5 chr14:67790529 5'GT 67790529 Upstream 9bp
chr1 9667766 9667766 1 + C T UCEC 9667764 + 9667744 9667784 41 CCAGCAGCTCTTCCGGTCTCCTCGACGGACCTCACCCTCCT CCAGCAGCTCTTCCGGTCTCCTTGACGGACCTCACCCTCCT < 41bp 0.803728819553075 0.571084871968541 0.86144316 0.24980745 prediction 0.465287895169066 Functional Loss - TMEM201 ENSG00000188807 CDS Human protein_coding chr1:9667764 chr1:9667766 stopgain 0.986 1 23 hm5C_associated_SNPs_73298 0 0 1 0 1 TMEM201 chr1:9667847 5'GT 9667847 Upstream 82bp
chr19 49894152 49894152 1 + C T rs7256629 49894150 + 49894130 49894170 41 AGGGGTGGCCCATGGACCTGCCCGAGGGCCCGGTGGGTGGC AGGGGTGGCCCATGGACCTGCCTGAGGGCCCGGTGGGTGGC < 41bp 0.789204517336701 0.556563510007649 0.354949 0.29410785 prediction 0.465282014658104 Functional Loss - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49894150 chr19:49894152 synonymous SNV . 0 23 hm5C_associated_SNPs_73300 0 0 0 0 1 CCDC155 chr19:49894183 5'GT 49894183 Upstream 32bp
chr5 150051958 150051958 1 + T C rs194134 150051957 + 150051937 150051977 41 AAGTTCAACCACACCGCCATCTCCAAGGGCTACCGCTGCCC AAGTTCAACCACACCGCCATCCCCAAGGGCTACCGCTGCCC < 41bp 0.839454120158982 0.60681313081098 0.95956266 0.14167982 prediction 0.465281978696005 Functional Loss - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150051957 chr5:150051958 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_73301 0 0 0 0 1 MYOZ3 chr5:150051902 3'AG 150051902 Downstream 57bp
chr3 25611265 25611265 1 + G T COAD 25611262 + 25611242 25611282 41 TTTCCAGCTGTCAGGAATGACAGGAACAAGAAAAAGAAGGA TTTCCAGCTGTCAGGAATGACAGTAACAAGAAAAAGAAGGA < 41bp 0.732638785561439 0.357497162707991 0.74947786 0.15677032 prediction 0.465277571122879 Functional Loss - RARB ENSG00000077092 CDS Human protein_coding chr3:25611262 chr3:25611265 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_73302 0 0 1 0 1 RARB chr3:25611249 3'AG 25611249 Downstream 17bp
chr10 85936261 85936261 1 + G A STAD 85936258 + 85936238 85936278 41 AAGAGGCGTCCTGCCAAGGCCTGGTCAGGCAGGAGAACCAG AAGAGGCGTCCTGCCAAGGCCTGATCAGGCAGGAGAACCAG < 41bp 0.762489560138197 0.529851319560716 0.16507691 0.09873006 prediction 0.465276481154962 Functional Loss - C10orf99 ENSG00000188373 CDS Human protein_coding chr10:85936258 chr10:85936261 stopgain 0.006 0 24 hm5C_associated_SNPs_73303 0 0 0 0 2 C10orf99 chr10:85936236 3'AG 85936236 Downstream 26bp
chr10 85936261 85936261 1 + G A STAD 85936258 + 85936238 85936278 41 AAGAGGCGTCCTGCCAAGGCCTGGTCAGGCAGGAGAACCAG AAGAGGCGTCCTGCCAAGGCCTGATCAGGCAGGAGAACCAG < 41bp 0.762489560138197 0.529851319560716 0.16507691 0.09873006 prediction 0.465276481154962 Functional Loss - C10orf99 ENSG00000188373 CDS Human protein_coding chr10:85936258 chr10:85936261 stopgain 0.006 0 24 hm5C_associated_SNPs_73303 0 0 0 0 2 C10orf99 chr10:85936325 5'GT 85936325 Upstream 65bp
chr16 84230322 84230322 1 + G A LUSC 84230319 + 84230299 84230339 41 CGGGCCTTTCACCAGGCGGCCAGGGCTGTGGGGAAGCCCTA CGGGCCTTTCACCAGGCGGCCAGAGCTGTGGGGAAGCCCTA < 41bp 0.767716795833169 0.535087925465702 0.9385091 0.92322725 prediction 0.465257740734934 Functional Loss - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84230319 chr16:84230322 synonymous SNV . 0 24 hm5C_associated_SNPs_73307 0 0 0 0 2 ADAD2 chr16:84230253 3'AG 84230253 Downstream 70bp
chr16 84230322 84230322 1 + G A LUSC 84230319 + 84230299 84230339 41 CGGGCCTTTCACCAGGCGGCCAGGGCTGTGGGGAAGCCCTA CGGGCCTTTCACCAGGCGGCCAGAGCTGTGGGGAAGCCCTA < 41bp 0.767716795833169 0.535087925465702 0.9385091 0.92322725 prediction 0.465257740734934 Functional Loss - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84230319 chr16:84230322 synonymous SNV . 0 24 hm5C_associated_SNPs_73307 0 0 0 0 2 ADAD2 chr16:84230373 5'GT 84230373 Upstream 52bp
chr20 61467613 61467613 1 + C T rs76559905 61467611 + 61467591 61467631 41 CCAGCGGTGTTCAGGGTGTCCCCGGGCCCCCCGGTCCTCTG CCAGCGGTGTTCAGGGTGTCCCTGGGCCCCCCGGTCCTCTG < 41bp 0.765147115341898 0.532522448555863 0.89820087 0.42013878 prediction 0.465249333572069 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61467611 chr20:61467613 synonymous SNV . 0 23 hm5C_associated_SNPs_73309 2 0 1 0 2 COL9A3 chr20:61467539 3'AG 61467539 Downstream 75bp
chr20 61467613 61467613 1 + C T rs76559905 61467611 + 61467591 61467631 41 CCAGCGGTGTTCAGGGTGTCCCCGGGCCCCCCGGTCCTCTG CCAGCGGTGTTCAGGGTGTCCCTGGGCCCCCCGGTCCTCTG < 41bp 0.765147115341898 0.532522448555863 0.89820087 0.42013878 prediction 0.465249333572069 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61467611 chr20:61467613 synonymous SNV . 0 23 hm5C_associated_SNPs_73309 2 0 1 0 2 COL9A3 chr20:61467685 5'GT 61467685 Upstream 73bp
chr19 36027783 36027783 1 + C T UCEC 36027781 + 36027761 36027801 41 CCAGCCACAACCAGAGCCCACACCAGTCAGGGAGGAAATAA CCAGCCACAACCAGAGCCCACATCAGTCAGGGAGGAAATAA < 41bp 0.809087702559981 0.576463147283275 0.12237668 0.15501362 prediction 0.465249110553412 Functional Loss - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36027781 chr19:36027783 nonsynonymous SNV 0.020 1 23 hm5C_associated_SNPs_73310 0 0 0 0 1 GAPDHS chr19:36027715 3'AG 36027715 Downstream 69bp
chr12 94243813 94243813 1 + G T LUAD 94243811 + 94243791 94243831 41 CATCAGACCGGCAGATTAACCAGCTGGCCCAGAGGCTGGGC CATCAGACCGGCAGATTAACCATCTGGCCCAGAGGCTGGGC < 41bp 0.732623575981958 0.387592406522677 0.7763169 0.043014467 prediction 0.465247151963917 Functional Loss - CRADD ENSG00000169372 CDS Human protein_coding chr12:94243811 chr12:94243813 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_73311 0 0 0 0 1 CRADD chr12:94243746 3'AG 94243746 Downstream 68bp
chr19 16625435 16625435 1 + G A UCEC 16625432 + 16625412 16625452 41 TCCCTCCTGCGCTCCCTGGACGCGGACTCCTTCCACTACCA TCCCTCCTGCGCTCCCTGGACGCAGACTCCTTCCACTACCA < 41bp 0.780757578601393 0.548139966167009 0.1772787 0.077293396 prediction 0.465235224868769 Functional Loss - C19orf44 ENSG00000105072 CDS Human protein_coding chr19:16625432 chr19:16625435 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_73314 0 0 1 0 2 C19orf44 chr19:16625361 3'AG 16625361 Downstream 75bp
chr19 16625435 16625435 1 + G A UCEC 16625432 + 16625412 16625452 41 TCCCTCCTGCGCTCCCTGGACGCGGACTCCTTCCACTACCA TCCCTCCTGCGCTCCCTGGACGCAGACTCCTTCCACTACCA < 41bp 0.780757578601393 0.548139966167009 0.1772787 0.077293396 prediction 0.465235224868769 Functional Loss - C19orf44 ENSG00000105072 CDS Human protein_coding chr19:16625432 chr19:16625435 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_73314 0 0 1 0 2 C19orf44 chr19:16625474 5'GT 16625474 Upstream 40bp
chr12 9083482 9083482 1 + G A COAD 9083479 + 9083459 9083499 41 GAATGTGGGCATGAACCTGACACGGACAGCCACACCTGCGC GAATGTGGGCATGAACCTGACACAGACAGCCACACCTGCGC < 41bp 0.755140050037352 0.522523082406473 0.24647745 0.08101049 prediction 0.465233935261759 Functional Loss - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9083479 chr12:9083482 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_73315 0 0 0 0 1 PHC1 chr12:9083523 5'GT 9083523 Upstream 42bp
chr1 33585676 33585676 1 + G T UCEC 33585674 + 33585654 33585694 41 GCGAAGGCAGCTGATGGCTGCAGAACAGGAGGATGACGTGG GCGAAGGCAGCTGATGGCTGCATAACAGGAGGATGACGTGG < 41bp 0.73261559326255 0.447883593334911 0.37499183 0.17695555 prediction 0.465231186525099 Functional Loss - AZIN2 ENSG00000142920 CDS Human protein_coding chr1:33585674 chr1:33585676 stopgain 0.778 0 23 hm5C_associated_SNPs_73316 0 0 0 0 1 AZIN2 chr1:33585645 3'AG 33585645 Downstream 32bp
chr2 120714440 120714440 1 + T C UCEC 120714439 + 120714419 120714459 41 GCAACTGTATCGGAAAAAACCTGGAATGACAATGTCCTGTG GCAACTGTATCGGAAAAAACCCGGAATGACAATGTCCTGTG < 41bp 0.746495018881027 0.513883614742268 0.612147 0.5580793 prediction 0.465222808277519 Functional Loss - PTPN4 ENSG00000088179 CDS Human protein_coding chr2:120714439 chr2:120714440 synonymous SNV . 0 22 hm5C_associated_SNPs_73317 0 0 1 0 2 PTPN4 chr2:120714420 3'AG 120714420 Downstream 21bp
chr2 120714440 120714440 1 + T C UCEC 120714439 + 120714419 120714459 41 GCAACTGTATCGGAAAAAACCTGGAATGACAATGTCCTGTG GCAACTGTATCGGAAAAAACCCGGAATGACAATGTCCTGTG < 41bp 0.746495018881027 0.513883614742268 0.612147 0.5580793 prediction 0.465222808277519 Functional Loss - PTPN4 ENSG00000088179 CDS Human protein_coding chr2:120714439 chr2:120714440 synonymous SNV . 0 22 hm5C_associated_SNPs_73317 0 0 1 0 2 PTPN4 chr2:120714510 5'GT 120714510 Upstream 71bp
chr4 145629453 145629453 1 + G A SKCM 145629450 + 145629430 145629470 41 AAGTGTTTGCTCATGGGCTCCACGATCCAGGCAGGTGAGAA AAGTGTTTGCTCATGGGCTCCACAATCCAGGCAGGTGAGAA < 41bp 0.734896481972027 0.502299739861639 0.047619402 0.07537702 prediction 0.465193484220775 Functional Loss - HHIP ENSG00000164161 CDS Human protein_coding chr4:145629450 chr4:145629453 nonsynonymous SNV 0.958 1 24 hm5C_associated_SNPs_73321 0 0 0 0 1 HHIP chr4:145629463 5'GT 145629463 Upstream 11bp
chr16 57080545 57080545 1 + G A BLCA 57080542 + 57080522 57080562 41 TTCCGTCAGCGCTGCATCCCCAGGAGCCTCTGGTACTGTCC TTCCGTCAGCGCTGCATCCCCAGAAGCCTCTGGTACTGTCC < 41bp 0.748590489005405 0.515994908321376 0.91422296 0.88092595 prediction 0.465191161368057 Functional Loss - NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57080542 chr16:57080545 synonymous SNV . 0 24 hm5C_associated_SNPs_73322 0 0 0 0 2 NLRC5 chr16:57080464 3'AG 57080464 Downstream 82bp
chr16 57080545 57080545 1 + G A BLCA 57080542 + 57080522 57080562 41 TTCCGTCAGCGCTGCATCCCCAGGAGCCTCTGGTACTGTCC TTCCGTCAGCGCTGCATCCCCAGAAGCCTCTGGTACTGTCC < 41bp 0.748590489005405 0.515994908321376 0.91422296 0.88092595 prediction 0.465191161368057 Functional Loss - NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57080542 chr16:57080545 synonymous SNV . 0 24 hm5C_associated_SNPs_73322 0 0 0 0 2 NLRC5 chr16:57080553 5'GT 57080553 Upstream 9bp
chr18 13057601 13057601 1 + G C BLCA 13057600 + 13057580 13057620 41 CCAGGGAGTGTCCGAGTGCCCGAGGAGTTGAAGCTTCCTCA CCAGGGAGTGTCCGAGTGCCCCAGGAGTTGAAGCTTCCTCA < 41bp 0.732594299529963 0.435688126288135 0.8850844 0.81126726 prediction 0.465188599059925 Functional Loss - CEP192 ENSG00000101639 CDS Human protein_coding chr18:13057600 chr18:13057601 nonsynonymous SNV 0.224 3 22 hm5C_associated_SNPs_73323 0 0 1 0 1 CEP192 chr18:13057584 3'AG 13057584 Downstream 18bp
chr7 150731483 150731483 1 + A C rs140819512 150731482 + 150731462 150731502 41 ATGACTGAGTCCCAGAATCTCAGCACCCACCTGCTTATCCT ATGACTGAGTCCCAGAATCTCCGCACCCACCTGCTTATCCT < 41bp 0.732591077656334 0.475051401504115 0.37746373 0.17844167 prediction 0.465182155312668 Functional Loss - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150731482 chr7:150731483 nonsynonymous SNV 0.016 2 22 hm5C_associated_SNPs_73325 0 0 1 0 1 ABCB8 chr7:150731515 5'GT 150731515 Upstream 33bp
chr9 43709727 43709727 1 + G A UCEC 43709724 + 43709704 43709744 41 CCTCAGAGCTGTCCAGCAGCCACGGCCCGGGGTTTTCAAGG CCTCAGAGCTGTCCAGCAGCCACAGCCCGGGGTTTTCAAGG < 41bp 0.746889789615681 0.514300157437162 0.2789567 0.23758894 prediction 0.465179264357038 Functional Loss - CNTNAP3B ENSG00000154529 CDS Human protein_coding chr9:43709724 chr9:43709727 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_73326 0 0 0 0 2 CNTNAP3B chr9:43709650 3'AG 43709650 Downstream 78bp
chr9 43709727 43709727 1 + G A UCEC 43709724 + 43709704 43709744 41 CCTCAGAGCTGTCCAGCAGCCACGGCCCGGGGTTTTCAAGG CCTCAGAGCTGTCCAGCAGCCACAGCCCGGGGTTTTCAAGG < 41bp 0.746889789615681 0.514300157437162 0.2789567 0.23758894 prediction 0.465179264357038 Functional Loss - CNTNAP3B ENSG00000154529 CDS Human protein_coding chr9:43709724 chr9:43709727 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_73326 0 0 0 0 2 CNTNAP3B chr9:43709760 5'GT 43709760 Upstream 34bp
chr3 153958278 153958278 1 + G T SKCM 153958275 + 153958255 153958295 41 CAGCTCCACAATGCTCTATTCAAGACAGAGCTCTGCCAGTC CAGCTCCACAATGCTCTATTCAATACAGAGCTCTGCCAGTC < 41bp 0.732586534507503 0.338712826111992 0.34429824 0.08518916 prediction 0.465173069015005 Functional Loss - ARHGEF26 ENSG00000114790 CDS Human protein_coding chr3:153958275 chr3:153958278 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_73327 0 0 0 0 1 ARHGEF26 chr3:153958368 5'GT 153958368 Upstream 91bp
chr1 197890501 197890501 1 + G A CESC 197890498 + 197890478 197890518 41 CCGCCTCGGAGATGGTCATGCGCGCCCGAGACTCTGTCTAC CCGCCTCGGAGATGGTCATGCGCACCCGAGACTCTGTCTAC < 41bp 0.732585506700731 0.494754346805296 0.31904325 0.22758582 prediction 0.465171013401461 Functional Loss - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197890498 chr1:197890501 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_73328 0 0 0 0 1 LHX9 chr1:197890434 3'AG 197890434 Downstream 68bp
chr1 197890500 197890500 1 + C T UCEC 197890498 + 197890478 197890518 41 CCGCCTCGGAGATGGTCATGCGCGCCCGAGACTCTGTCTAC CCGCCTCGGAGATGGTCATGCGTGCCCGAGACTCTGTCTAC < 41bp 0.732585506700731 0.460098788204133 0.31904325 0.33532926 prediction 0.465171013401461 Functional Loss - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197890498 chr1:197890500 synonymous SNV . 0 23 hm5C_associated_SNPs_73329 0 0 0 0 1 LHX9 chr1:197890434 3'AG 197890434 Downstream 67bp
chr22 18841245 18841245 1 + G T UCEC 18841242 + 18841222 18841262 41 CTGCCAGGACACGGATTGTCCAGGATTACATTCCAGCATCT CTGCCAGGACACGGATTGTCCAGTATTACATTCCAGCATCT < 41bp 0.732583947525116 0.373261471005631 0.76694787 0.13661054 prediction 0.465167895050233 Functional Loss - LOC102725072 ENSG00000161103;ENSG00000215544 intergenic Human other chr22:18841242 chr22:18841245 . . 0 24 hm5C_associated_SNPs_73330 0 0 0 4 2 LOC102725072 chr22:18841163 3'AG 18841163 Downstream 83bp
chr22 18841245 18841245 1 + G T UCEC 18841242 + 18841222 18841262 41 CTGCCAGGACACGGATTGTCCAGGATTACATTCCAGCATCT CTGCCAGGACACGGATTGTCCAGTATTACATTCCAGCATCT < 41bp 0.732583947525116 0.373261471005631 0.76694787 0.13661054 prediction 0.465167895050233 Functional Loss - LOC102725072 ENSG00000161103;ENSG00000215544 intergenic Human other chr22:18841242 chr22:18841245 . . 0 24 hm5C_associated_SNPs_73330 0 0 0 4 2 LOC102725072 chr22:18841268 5'GT 18841268 Upstream 24bp
chr7 65554141 65554141 1 + G A ACC 65554138 + 65554118 65554158 41 AGTTTGGAGCTGATCCGGAGCAAGGCTGGGCGTGTGTTTGG AGTTTGGAGCTGATCCGGAGCAAAGCTGGGCGTGTGTTTGG < 41bp 0.732580949691506 0.488449061342148 0.49040902 0.38085127 prediction 0.465161899383011 Functional Loss - ASL ENSG00000126522;ENSG00000249319 CDS Human other chr7:65554138 chr7:65554141 synonymous SNV . 0 24 hm5C_associated_SNPs_73334 0 0 1 0 2 ASL chr7:65554078 3'AG 65554078 Downstream 64bp
chr7 65554141 65554141 1 + G A ACC 65554138 + 65554118 65554158 41 AGTTTGGAGCTGATCCGGAGCAAGGCTGGGCGTGTGTTTGG AGTTTGGAGCTGATCCGGAGCAAAGCTGGGCGTGTGTTTGG < 41bp 0.732580949691506 0.488449061342148 0.49040902 0.38085127 prediction 0.465161899383011 Functional Loss - ASL ENSG00000126522;ENSG00000249319 CDS Human other chr7:65554138 chr7:65554141 synonymous SNV . 0 24 hm5C_associated_SNPs_73334 0 0 1 0 2 ASL chr7:65554162 5'GT 65554162 Upstream 22bp
chr2 128389279 128389279 1 + G A SKCM 128389276 + 128389256 128389296 41 CCCTGCAGCACCCGGCCCTCCAGGACGAGGTCTACTGCCAG CCCTGCAGCACCCGGCCCTCCAGAACGAGGTCTACTGCCAG < 41bp 0.73731092839882 0.504731111899797 0.33016866 0.18000767 prediction 0.465159632998046 Functional Loss - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128389276 chr2:128389279 nonsynonymous SNV 0.839 5 24 hm5C_associated_SNPs_73335 0 0 0 0 1 MYO7B chr2:128389328 5'GT 128389328 Upstream 50bp
chr10 135126329 135126329 1 + C T UCEC 135126327 + 135126307 135126347 41 CTGCTTTGGTCAGGGTGCCGCTCGAGGATTTAAAAGCAACA CTGCTTTGGTCAGGGTGCCGCTTGAGGATTTAAAAGCAACA < 41bp 0.758775372872198 0.526197645845059 0.29120076 0.2665963 prediction 0.465155454054279 Functional Loss - ZNF511 ENSG00000198546 CDS Human protein_coding chr10:135126327 chr10:135126329 stopgain 0.577 0 23 hm5C_associated_SNPs_73336 0 0 1 0 1 ZNF511 chr10:135126292 3'AG 135126292 Downstream 38bp
chr22 42299073 42299073 1 + G A UCEC 42299070 + 42299050 42299090 41 AGGCTGTGGGGGAGACCTACCACGCGTCAGGCGCTGAACTG AGGCTGTGGGGGAGACCTACCACACGTCAGGCGCTGAACTG < 41bp 0.756070790437674 0.52349817868295 0.56794965 0.2339718 prediction 0.465145223509448 Functional Loss - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42299070 chr22:42299073 nonsynonymous SNV 0.412 4 24 hm5C_associated_SNPs_73337 0 0 1 0 2 SREBF2 chr22:42298974 3'AG 42298974 Downstream 100bp
chr22 42299073 42299073 1 + G A UCEC 42299070 + 42299050 42299090 41 AGGCTGTGGGGGAGACCTACCACGCGTCAGGCGCTGAACTG AGGCTGTGGGGGAGACCTACCACACGTCAGGCGCTGAACTG < 41bp 0.756070790437674 0.52349817868295 0.56794965 0.2339718 prediction 0.465145223509448 Functional Loss - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42299070 chr22:42299073 nonsynonymous SNV 0.412 4 24 hm5C_associated_SNPs_73337 0 0 1 0 2 SREBF2 chr22:42299159 5'GT 42299159 Upstream 87bp
chr9 22451104 22451104 1 + G A UCEC 22451101 + 22451081 22451121 41 GTGAGTCATGCCAGAATGGACAAGAAGAACTGATCTCCAAA GTGAGTCATGCCAGAATGGACAAAAAGAACTGATCTCCAAA < 41bp 0.741884285558925 0.509316028414426 0.22957134 0.110135496 prediction 0.465136514288996 Functional Loss - DMRTA1 ENSG00000176399 CDS Human protein_coding chr9:22451101 chr9:22451104 nonsynonymous SNV 0.973 0 24 hm5C_associated_SNPs_73339 0 0 0 0 1 DMRTA1 chr9:22451063 3'AG 22451063 Downstream 42bp
chr8 23117745 23117745 1 + C T UCEC 23117743 + 23117723 23117763 41 TGGATCTGCCTGACAACCCCCGCAATAGGCATTTTACCAAC TGGATCTGCCTGACAACCCCCGTAATAGGCATTTTACCAAC < 41bp 0.732563000754326 0.435248305902975 0.15356904 0.19457081 prediction 0.465126001508651 Functional Loss - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23117743 chr8:23117745 synonymous SNV . 0 23 hm5C_associated_SNPs_73343 0 0 1 0 2 CHMP7 chr8:23117657 3'AG 23117657 Downstream 89bp
chr8 23117745 23117745 1 + C T UCEC 23117743 + 23117723 23117763 41 TGGATCTGCCTGACAACCCCCGCAATAGGCATTTTACCAAC TGGATCTGCCTGACAACCCCCGTAATAGGCATTTTACCAAC < 41bp 0.732563000754326 0.435248305902975 0.15356904 0.19457081 prediction 0.465126001508651 Functional Loss - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23117743 chr8:23117745 synonymous SNV . 0 23 hm5C_associated_SNPs_73343 0 0 1 0 2 CHMP7 chr8:23117836 5'GT 23117836 Upstream 92bp
chr1 196887426 196887426 1 + G T LUAD 196887424 + 196887404 196887444 41 CATAAAATATTATGCAAAAACAGGGGATACCATTGAATTTA CATAAAATATTATGCAAAAACATGGGATACCATTGAATTTA < 41bp 0.73255987256911 0.427413810566289 0.85754895 0.062959254 prediction 0.465119745138221 Functional Loss - CFHR4 ENSG00000134365 CDS Human protein_coding chr1:196887424 chr1:196887426 nonsynonymous SNV 0.010 4 23 hm5C_associated_SNPs_73344 0 0 0 0 1 CFHR4 chr1:196887340 3'AG 196887340 Downstream 87bp
chr1 196887427 196887427 1 + G T LUAD 196887424 + 196887404 196887444 41 CATAAAATATTATGCAAAAACAGGGGATACCATTGAATTTA CATAAAATATTATGCAAAAACAGTGGATACCATTGAATTTA < 41bp 0.73255987256911 0.370965845252548 0.85754895 0.062211245 prediction 0.465119745138221 Functional Loss - CFHR4 ENSG00000134365 CDS Human protein_coding chr1:196887424 chr1:196887427 nonsynonymous SNV 0.004 4 24 hm5C_associated_SNPs_73345 0 0 0 0 1 CFHR4 chr1:196887340 3'AG 196887340 Downstream 88bp
chr1 33583707 33583707 1 + C T SKCM 33583705 + 33583685 33583725 41 CCACATCACCTATGCCATGTCCCGGGTGGCCTGGTAAGAGG CCACATCACCTATGCCATGTCCTGGGTGGCCTGGTAAGAGG < 41bp 0.732556562411754 0.487007999097448 0.09031525 0.09468195 prediction 0.465113124823507 Functional Loss - AZIN2 ENSG00000142920 CDS Human protein_coding chr1:33583705 chr1:33583707 nonsynonymous SNV 0.989 2 23 hm5C_associated_SNPs_73346 0 0 0 0 1 AZIN2 chr1:33583717 5'GT 33583717 Upstream 11bp
chr7 158695262 158695262 1 + G T UCEC 158695260 + 158695240 158695280 41 GTTTCAGAAGCGAGGTAGAACAGAATTTGAAAAGGAGCCCA GTTTCAGAAGCGAGGTAGAACATAATTTGAAAAGGAGCCCA < 41bp 0.732554824956921 0.402707463036356 0.3226878 0.2819931 prediction 0.465109649913841 Functional Loss - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158695260 chr7:158695262 stopgain 0.003 1 23 hm5C_associated_SNPs_73349 0 0 1 0 1 WDR60 chr7:158695286 5'GT 158695286 Upstream 25bp
chr8 145247305 145247305 1 + G A UCEC 145247302 + 145247282 145247322 41 TCTTGGCTGCACTGCACTCCCAGGTAGGAGGCGGGCGTCAG TCTTGGCTGCACTGCACTCCCAGATAGGAGGCGGGCGTCAG < 41bp 0.744824195138225 0.512269765949442 0.8047462 0.46195698 prediction 0.465108858377568 Functional Loss - MROH1 ENSG00000179832 splicing Human protein_coding chr8:145247302 chr8:145247305 . 0.886 0 24 hm5C_associated_SNPs_73350 0 0 1 0 1 MROH1 chr8:145247212 3'AG 145247212 Downstream 94bp
chr4 3446112 3446112 1 + G A rs16844370 3446109 + 3446089 3446129 41 GGGCCCGCGTGCGCCAGGGCCACGTGGAACAGTGCGAGTGC GGGCCCGCGTGCGCCAGGGCCACATGGAACAGTGCGAGTGC < 41bp 0.779614598167803 0.547060234375247 0.80689585 0.45968142 prediction 0.465108727585113 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3446109 chr4:3446112 nonsynonymous SNV 0.112 4 24 hm5C_associated_SNPs_73351 0 0 1 0 2 HGFAC chr4:3446038 3'AG 3446038 Downstream 75bp
chr4 3446112 3446112 1 + G A rs16844370 3446109 + 3446089 3446129 41 GGGCCCGCGTGCGCCAGGGCCACGTGGAACAGTGCGAGTGC GGGCCCGCGTGCGCCAGGGCCACATGGAACAGTGCGAGTGC < 41bp 0.779614598167803 0.547060234375247 0.80689585 0.45968142 prediction 0.465108727585113 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3446109 chr4:3446112 nonsynonymous SNV 0.112 4 24 hm5C_associated_SNPs_73351 0 0 1 0 2 HGFAC chr4:3446169 5'GT 3446169 Upstream 58bp
chr1 22986097 22986097 1 + G A UCEC 22986094 + 22986074 22986114 41 GTATCCCTGGGACACCTGGCCCCGATGGCCAACCTGGGACC GTATCCCTGGGACACCTGGCCCCAATGGCCAACCTGGGACC < 41bp 0.784304816515037 0.551752047734612 0.36873984 0.051332384 prediction 0.465105537560851 Functional Loss - C1QB ENSG00000173369 CDS Human protein_coding chr1:22986094 chr1:22986097 nonsynonymous SNV 0.359 1 24 hm5C_associated_SNPs_73353 0 0 0 0 1 C1QB chr1:22986136 5'GT 22986136 Upstream 40bp
chr15 81584925 81584925 1 + C T rs61752774 81584923 + 81584903 81584943 41 AAAGGCTGGAAAGCAGTTGGCACGGGCGGCCCACCTTGGAG AAAGGCTGGAAAGCAGTTGGCATGGGCGGCCCACCTTGGAG < 41bp 0.755064425315781 0.52251227557902 0.86395216 0.8900819 prediction 0.465104299473522 Functional Loss - IL16 ENSG00000172349 CDS Human protein_coding chr15:81584923 chr15:81584925 synonymous SNV . 0 23 hm5C_associated_SNPs_73354 0 0 0 0 1 IL16 chr15:81584897 3'AG 81584897 Downstream 29bp
chr7 87005030 87005030 1 + C T READ 87005028 + 87005008 87005048 41 ATTAACTAGTGAGGAGCGAACTCGATGGGCTAAGGTTCTGA ATTAACTAGTGAGGAGCGAACTTGATGGGCTAAGGTTCTGA < 41bp 0.852610727109863 0.620065379574325 0.8776537 0.45370063 prediction 0.465090695071076 Functional Loss - CROT ENSG00000005469 CDS Human protein_coding chr7:87005028 chr7:87005030 stopgain 0.992 0 23 hm5C_associated_SNPs_73358 0 0 1 0 2 CROT chr7:87004948 3'AG 87004948 Downstream 83bp
chr7 87005030 87005030 1 + C T READ 87005028 + 87005008 87005048 41 ATTAACTAGTGAGGAGCGAACTCGATGGGCTAAGGTTCTGA ATTAACTAGTGAGGAGCGAACTTGATGGGCTAAGGTTCTGA < 41bp 0.852610727109863 0.620065379574325 0.8776537 0.45370063 prediction 0.465090695071076 Functional Loss - CROT ENSG00000005469 CDS Human protein_coding chr7:87005028 chr7:87005030 stopgain 0.992 0 23 hm5C_associated_SNPs_73358 0 0 1 0 2 CROT chr7:87005041 5'GT 87005041 Upstream 12bp
chr19 55047096 55047096 1 + A T GBM 55047092 + 55047072 55047112 41 GGTCGGCTCCCAGTGACCCCCTGGACATTGTGATCACAGGT GGTCGGCTCCCAGTGACCCCCTGGTCATTGTGATCACAGGT < 41bp 0.732540018915179 0.419724758603601 0.095394075 0.02272904 prediction 0.465080037830358 Functional Loss - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55047092 chr19:55047096 nonsynonymous SNV 0.035 0 25 hm5C_associated_SNPs_73360 0 0 0 0 1 KIR3DX1 chr19:55047110 5'GT 55047110 Upstream 15bp
chr3 14170992 14170992 1 + G A CESC 14170989 + 14170969 14171009 41 GGCTTCCTGGAACGGCTGAGCGAGACCTCGGGTGGGATGTT GGCTTCCTGGAACGGCTGAGCGAAACCTCGGGTGGGATGTT < 41bp 0.785686777203507 0.553147888220535 0.9054402 0.5679995 prediction 0.465077777965944 Functional Loss - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14170989 chr3:14170992 synonymous SNV . 0 24 hm5C_associated_SNPs_73361 0 0 1 0 2 TMEM43 chr3:14170912 3'AG 14170912 Downstream 81bp
chr3 14170992 14170992 1 + G A CESC 14170989 + 14170969 14171009 41 GGCTTCCTGGAACGGCTGAGCGAGACCTCGGGTGGGATGTT GGCTTCCTGGAACGGCTGAGCGAAACCTCGGGTGGGATGTT < 41bp 0.785686777203507 0.553147888220535 0.9054402 0.5679995 prediction 0.465077777965944 Functional Loss - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14170989 chr3:14170992 synonymous SNV . 0 24 hm5C_associated_SNPs_73361 0 0 1 0 2 TMEM43 chr3:14171061 5'GT 14171061 Upstream 70bp
chr19 42791817 42791817 1 + G T LGG 42791814 + 42791794 42791834 41 ACCGGACCGTCAGCAAGATCCTGGGCGAGTGGTGGTATGCC ACCGGACCGTCAGCAAGATCCTGTGCGAGTGGTGGTATGCC < 41bp 0.732537137877964 0.333567383175615 0.8727877 0.45744073 prediction 0.465074275755927 Functional Loss - CIC ENSG00000079432 CDS Human protein_coding chr19:42791814 chr19:42791817 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_73363 0 0 1 0 1 CIC chr19:42791879 5'GT 42791879 Upstream 63bp
chr15 41191372 41191372 1 + C T COAD 41191370 + 41191350 41191390 41 CTGCTGATTGCCCTGAGCAGCACGGAGGTCCTCTACGTGAA CTGCTGATTGCCCTGAGCAGCATGGAGGTCCTCTACGTGAA < 41bp 0.732533740604844 0.475948845823076 0.33500582 0.29590616 prediction 0.465067481209688 Functional Loss - VPS18 ENSG00000104142 CDS Human protein_coding chr15:41191370 chr15:41191372 nonsynonymous SNV 0.931 1 23 hm5C_associated_SNPs_73364 0 0 1 0 1 VPS18 chr15:41191342 3'AG 41191342 Downstream 31bp
chr1 158815404 158815404 1 + G A SKCM 158815401 + 158815381 158815421 41 AGGAAACCCAGGCCCAACGGCAGGTGGATGCAAGAAGAAAT AGGAAACCCAGGCCCAACGGCAGATGGATGCAAGAAGAAAT < 41bp 0.741339405630776 0.508812593213698 0.5283713 0.37417018 prediction 0.465053624834157 Functional Loss - MNDA ENSG00000163563 CDS Human protein_coding chr1:158815401 chr1:158815404 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_73367 0 0 0 0 1 MNDA chr1:158815377 3'AG 158815377 Downstream 28bp
chr16 57597817 57597817 1 + C T GBM 57597815 + 57597795 57597835 41 GCAGTTCCCCGCCGAGCTGACCCGGGACGCCTGCAAGACCC GCAGTTCCCCGCCGAGCTGACCTGGGACGCCTGCAAGACCC < 41bp 0.732526655012672 0.468418378403138 0.43574685 0.40155473 prediction 0.465053310025343 Functional Loss - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57597815 chr16:57597817 nonsynonymous SNV 0.017 2 23 hm5C_associated_SNPs_73368 0 0 0 0 2 ADGRG5 chr16:57597760 3'AG 57597760 Downstream 58bp
chr16 57597817 57597817 1 + C T GBM 57597815 + 57597795 57597835 41 GCAGTTCCCCGCCGAGCTGACCCGGGACGCCTGCAAGACCC GCAGTTCCCCGCCGAGCTGACCTGGGACGCCTGCAAGACCC < 41bp 0.732526655012672 0.468418378403138 0.43574685 0.40155473 prediction 0.465053310025343 Functional Loss - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57597815 chr16:57597817 nonsynonymous SNV 0.017 2 23 hm5C_associated_SNPs_73368 0 0 0 0 2 ADGRG5 chr16:57597891 5'GT 57597891 Upstream 75bp
chr16 57597818 57597818 1 + G A STAD 57597815 + 57597795 57597835 41 GCAGTTCCCCGCCGAGCTGACCCGGGACGCCTGCAAGACCC GCAGTTCCCCGCCGAGCTGACCCAGGACGCCTGCAAGACCC < 41bp 0.732526655012672 0.481273932167192 0.43574685 0.18424675 prediction 0.465053310025343 Functional Loss - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57597815 chr16:57597818 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_73369 0 0 0 0 2 ADGRG5 chr16:57597760 3'AG 57597760 Downstream 59bp
chr16 57597818 57597818 1 + G A STAD 57597815 + 57597795 57597835 41 GCAGTTCCCCGCCGAGCTGACCCGGGACGCCTGCAAGACCC GCAGTTCCCCGCCGAGCTGACCCAGGACGCCTGCAAGACCC < 41bp 0.732526655012672 0.481273932167192 0.43574685 0.18424675 prediction 0.465053310025343 Functional Loss - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57597815 chr16:57597818 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_73369 0 0 0 0 2 ADGRG5 chr16:57597891 5'GT 57597891 Upstream 74bp
chr12 18443844 18443844 1 + A T GBM 18443840 + 18443820 18443860 41 AATTTCAATTCTGGGAAGATCTGGAGCACTACTACAGCATT AATTTCAATTCTGGGAAGATCTGGTGCACTACTACAGCATT < 41bp 0.732513168196315 0.418559389256209 0.71295345 0.3301245 prediction 0.465026336392631 Functional Loss - PIK3C2G ENSG00000139144 CDS Human protein_coding chr12:18443840 chr12:18443844 nonsynonymous SNV 0.500 1 25 hm5C_associated_SNPs_73373 0 0 0 0 1 PIK3C2G chr12:18443789 3'AG 18443789 Downstream 56bp
chr10 89717663 89717663 1 + G T UCEC 89717661 + 89717641 89717681 41 GAAGATATATTCCTCCAATTCAGGACCCACACGACGGGAAG GAAGATATATTCCTCCAATTCATGACCCACACGACGGGAAG < 41bp 0.892604093329503 0.660092077137079 0.75852597 0.034549385 prediction 0.465024032384849 Functional Loss - PTEN ENSG00000171862 CDS Human protein_coding chr10:89717661 chr10:89717663 stopgain 1.000 0 23 hm5C_associated_SNPs_73374 0 0 1 0 1 PTEN chr10:89717610 3'AG 89717610 Downstream 54bp
chr1 221054571 221054571 1 + G T LUSC 221054569 + 221054549 221054589 41 GCTAACCGGTGGGCGGCCCGCCGGGGTGCACCTCTCAGGCC GCTAACCGGTGGGCGGCCCGCCTGGGTGCACCTCTCAGGCC < 41bp 0.909314100821285 0.676802635378624 0.9140153 0.19937411 prediction 0.465022930885322 Functional Loss - HLX ENSG00000136630 CDS Human protein_coding chr1:221054569 chr1:221054571 nonsynonymous SNV 0.233 5 23 hm5C_associated_SNPs_73375 0 0 0 0 1 HLX chr1:221054536 3'AG 221054536 Downstream 36bp
chr7 127238588 127238588 1 + A C UCEC 127238584 + 127238564 127238604 41 GGCAGGATCATCCTGCAGTCCTGCAGGGGGCGCTTCCTGGG GGCAGGATCATCCTGCAGTCCTGCCGGGGGCGCTTCCTGGG < 41bp 0.943259704383984 0.710748609144617 0.11300194 0.09880546 prediction 0.465022190478734 Functional Loss - FSCN3 ENSG00000106328 CDS Human protein_coding chr7:127238584 chr7:127238588 synonymous SNV . 0 25 hm5C_associated_SNPs_73376 0 0 0 0 2 FSCN3 chr7:127238489 3'AG 127238489 Downstream 100bp
chr7 127238588 127238588 1 + A C UCEC 127238584 + 127238564 127238604 41 GGCAGGATCATCCTGCAGTCCTGCAGGGGGCGCTTCCTGGG GGCAGGATCATCCTGCAGTCCTGCCGGGGGCGCTTCCTGGG < 41bp 0.943259704383984 0.710748609144617 0.11300194 0.09880546 prediction 0.465022190478734 Functional Loss - FSCN3 ENSG00000106328 CDS Human protein_coding chr7:127238584 chr7:127238588 synonymous SNV . 0 25 hm5C_associated_SNPs_73376 0 0 0 0 2 FSCN3 chr7:127238648 5'GT 127238648 Upstream 61bp
chr1 155015875 155015875 1 + C T UCEC 155015873 + 155015853 155015893 41 GGCTCAACACAAGCTGGGAGCGCGTGAGCACCGAGGTGCGG GGCTCAACACAAGCTGGGAGCGTGTGAGCACCGAGGTGCGG < 41bp 0.732507446734902 0.479190713057997 0.7222552 0.74924374 prediction 0.465014893469803 Functional Loss - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155015873 chr1:155015875 synonymous SNV . 0 23 hm5C_associated_SNPs_73381 0 0 0 0 1 DCST1 chr1:155015828 3'AG 155015828 Downstream 48bp
chr1 203741250 203741250 1 + G T UCEC 203741248 + 203741228 203741268 41 AGTACTGAGAGCCTCCTCTCCAGAAATTCTGAGAGCCCGGA AGTACTGAGAGCCTCCTCTCCATAAATTCTGAGAGCCCGGA < 41bp 0.732506987023779 0.375239774465765 0.08071548 0.022099048 prediction 0.465013974047558 Functional Loss - LAX1 ENSG00000122188 CDS Human protein_coding chr1:203741248 chr1:203741250 nonsynonymous SNV 0.947 4 23 hm5C_associated_SNPs_73382 0 0 0 0 2 LAX1 chr1:203741196 3'AG 203741196 Downstream 55bp
chr1 203741250 203741250 1 + G T UCEC 203741248 + 203741228 203741268 41 AGTACTGAGAGCCTCCTCTCCAGAAATTCTGAGAGCCCGGA AGTACTGAGAGCCTCCTCTCCATAAATTCTGAGAGCCCGGA < 41bp 0.732506987023779 0.375239774465765 0.08071548 0.022099048 prediction 0.465013974047558 Functional Loss - LAX1 ENSG00000122188 CDS Human protein_coding chr1:203741248 chr1:203741250 nonsynonymous SNV 0.947 4 23 hm5C_associated_SNPs_73382 0 0 0 0 2 LAX1 chr1:203741275 5'GT 203741275 Upstream 26bp
chr11 64129359 64129359 1 + G A UCEC 64129356 + 64129336 64129376 41 GTGCTCCCCTCCCTTCCCCCCTCGGATCGGGCCCGTGGCGC GTGCTCCCCTCCCTTCCCCCCTCAGATCGGGCCCGTGGCGC < 41bp 0.785637792539984 0.553131081523807 0.032287717 0.026703626 prediction 0.465013422032354 Functional Loss - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64129356 chr11:64129359 nonsynonymous SNV 0.981 0 24 hm5C_associated_SNPs_73383 0 0 1 0 1 RPS6KA4 chr11:64129324 3'AG 64129324 Downstream 36bp
chr22 40745955 40745955 1 + C T HNSC 40745953 + 40745933 40745973 41 TACGACATGATGTGATGGCTCACGTGCACACATTTGGCCAC TACGACATGATGTGATGGCTCATGTGCACACATTTGGCCAC < 41bp 0.833854940919203 0.601349073229236 0.20913693 0.23151541 prediction 0.465011735379934 Functional Loss - ADSL ENSG00000239900 CDS Human protein_coding chr22:40745953 chr22:40745955 synonymous SNV . 0 23 hm5C_associated_SNPs_73384 0 0 1 0 1 ADSL chr22:40746039 5'GT 40746039 Upstream 85bp
chr19 41263354 41263354 1 + G T LUAD 41263352 + 41263332 41263372 41 GTCATCTTCAAGGAGGTCAGCAGCGCCACCAACGCCCTGCG GTCATCTTCAAGGAGGTCAGCATCGCCACCAACGCCCTGCG < 41bp 0.732505406001076 0.365256844486949 0.83390033 0.25858098 prediction 0.465010812002152 Functional Loss - SNRPA ENSG00000077312 CDS Human protein_coding chr19:41263352 chr19:41263354 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_73386 0 0 1 0 1 SNRPA chr19:41263409 5'GT 41263409 Upstream 56bp
chr12 8242617 8242617 1 + G T STAD 8242614 + 8242594 8242634 41 GGAAGACTGCCTATATCAAACTCGAGGATAAAGTTTCAGGT GGAAGACTGCCTATATCAAACTCTAGGATAAAGTTTCAGGT < 41bp 0.911388470321276 0.678883401997749 0.092858076 0.18665394 prediction 0.465010136647054 Functional Loss - NECAP1 ENSG00000089818 CDS Human protein_coding chr12:8242614 chr12:8242617 stopgain 0.987 1 24 hm5C_associated_SNPs_73387 0 0 0 0 2 NECAP1 chr12:8242532 3'AG 8242532 Downstream 86bp
chr12 8242617 8242617 1 + G T STAD 8242614 + 8242594 8242634 41 GGAAGACTGCCTATATCAAACTCGAGGATAAAGTTTCAGGT GGAAGACTGCCTATATCAAACTCTAGGATAAAGTTTCAGGT < 41bp 0.911388470321276 0.678883401997749 0.092858076 0.18665394 prediction 0.465010136647054 Functional Loss - NECAP1 ENSG00000089818 CDS Human protein_coding chr12:8242614 chr12:8242617 stopgain 0.987 1 24 hm5C_associated_SNPs_73387 0 0 0 0 2 NECAP1 chr12:8242632 5'GT 8242632 Upstream 16bp
chr1 158262155 158262155 1 + G A SKCM 158262152 + 158262132 158262172 41 GGAAGATGTATGTACACAGGCAAGGTCAGTAGTTTCAGCCC GGAAGATGTATGTACACAGGCAAAGTCAGTAGTTTCAGCCC < 41bp 0.75784536587998 0.525341820106867 0.27973795 0.22190452 prediction 0.465007091546227 Functional Loss - CD1C ENSG00000158481 CDS Human protein_coding chr1:158262152 chr1:158262155 nonsynonymous SNV 0.132 2 24 hm5C_associated_SNPs_73389 0 0 0 0 1 CD1C chr1:158262155 5'GT 158262155 Upstream 1bp
chr3 158363516 158363516 1 + T C LUAD 158363515 + 158363495 158363535 41 TCACATTGATTCTGGGAAAACTACATTAACAGAACGAGTCC TCACATTGATTCTGGGAAAACCACATTAACAGAACGAGTCC < 41bp 0.759244780488926 0.526742310360406 0.94669163 0.2929616 prediction 0.465004940257039 Functional Loss - GFM1 ENSG00000168827 CDS Human protein_coding chr3:158363515 chr3:158363516 synonymous SNV . 0 22 hm5C_associated_SNPs_73390 0 0 1 0 2 GFM1 chr3:158363418 3'AG 158363418 Downstream 99bp
chr3 158363516 158363516 1 + T C LUAD 158363515 + 158363495 158363535 41 TCACATTGATTCTGGGAAAACTACATTAACAGAACGAGTCC TCACATTGATTCTGGGAAAACCACATTAACAGAACGAGTCC < 41bp 0.759244780488926 0.526742310360406 0.94669163 0.2929616 prediction 0.465004940257039 Functional Loss - GFM1 ENSG00000168827 CDS Human protein_coding chr3:158363515 chr3:158363516 synonymous SNV . 0 22 hm5C_associated_SNPs_73390 0 0 1 0 2 GFM1 chr3:158363570 5'GT 158363570 Upstream 55bp
chr11 119002578 119002578 1 + G T LUAD 119002575 + 119002555 119002595 41 TCAAGGACCGCAGTAAACTTCGAGAGCACCTCCGCAGCCAT TCAAGGACCGCAGTAAACTTCGATAGCACCTCCGCAGCCAT < 41bp 0.915635568980074 0.683133140336038 0.9139676 0.27693653 prediction 0.465004857288072 Functional Loss - HINFP ENSG00000172273 CDS Human protein_coding chr11:119002575 chr11:119002578 stopgain 0.998 1 24 hm5C_associated_SNPs_73391 0 0 0 0 1 HINFP chr11:119002540 3'AG 119002540 Downstream 39bp
chr1 175049313 175049313 1 + G A SKCM 175049310 + 175049290 175049330 41 TGCCTGCAGTGGTCACCCCACAGGGCCTGCAGCTGCTCAAG TGCCTGCAGTGGTCACCCCACAGAGCCTGCAGCTGCTCAAG < 41bp 0.790214308175476 0.557712416090131 0.89039993 0.68195456 prediction 0.465003784170691 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175049310 chr1:175049313 nonsynonymous SNV 0.985 1 24 hm5C_associated_SNPs_73392 0 0 0 0 1 TNN chr1:175049299 3'AG 175049299 Downstream 15bp
chr10 135342101 135342101 1 + G A rs28371740 135342098 + 135342078 135342118 41 CTGGACTACAAGGACGAGTTCTCGGGCAGAGGCGACCTCCC CTGGACTACAAGGACGAGTTCTCAGGCAGAGGCGACCTCCC < 41bp 0.773576037208275 0.541075562103615 0.20528203 0.12570748 prediction 0.46500095020932 Functional Loss - CYP2E1 ENSG00000130649 CDS Human protein_coding chr10:135342098 chr10:135342101 synonymous SNV . 0 24 hm5C_associated_SNPs_73394 0 0 0 0 1 CYP2E1 chr10:135342144 5'GT 135342144 Upstream 44bp
chr19 756956 756956 1 + G A UCEC 756953 + 756933 756973 41 AGACCCCGGAAGAGATGGACCGCGTGACCAGATACCCCATC AGACCCCGGAAGAGATGGACCGCATGACCAGATACCCCATC < 41bp 0.737763447422904 0.505263235422371 0.109892964 0.029099703 prediction 0.465000424001065 Functional Loss - MISP ENSG00000099812 CDS Human protein_coding chr19:756953 chr19:756956 nonsynonymous SNV 0.694 3 24 hm5C_associated_SNPs_73397 0 0 0 0 1 MISP chr19:756890 3'AG 756890 Downstream 67bp
chr16 28890060 28890060 1 + G A HNSC 28890057 + 28890037 28890077 41 TTTTGGGGTGAGTGAGACCACGGGCCTCACCCCGGACCAAG TTTTGGGGTGAGTGAGACCACGGACCTCACCCCGGACCAAG < 41bp 0.770532651040379 0.53803870363407 0.88466334 0.79729277 prediction 0.464987894812618 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28890057 chr16:28890060 nonsynonymous SNV 0.985 4 24 hm5C_associated_SNPs_73401 0 0 1 0 1 ATP2A1 chr16:28890110 5'GT 28890110 Upstream 51bp
chr19 49913016 49913016 1 + G A SKCM 49913013 + 49912993 49913033 41 AACAACTTCTGTCCCAGAAACAGGAAGTGGCAACTGCTGAT AACAACTTCTGTCCCAGAAACAGAAAGTGGCAACTGCTGAT < 41bp 0.742026126893957 0.509532563716655 0.83368415 0.6892562 prediction 0.464987126354603 Functional Loss - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49913013 chr19:49913016 nonsynonymous SNV 0.075 1 24 hm5C_associated_SNPs_73402 0 0 0 0 2 CCDC155 chr19:49913010 3'AG 49913010 Downstream 7bp
chr19 49913016 49913016 1 + G A SKCM 49913013 + 49912993 49913033 41 AACAACTTCTGTCCCAGAAACAGGAAGTGGCAACTGCTGAT AACAACTTCTGTCCCAGAAACAGAAAGTGGCAACTGCTGAT < 41bp 0.742026126893957 0.509532563716655 0.83368415 0.6892562 prediction 0.464987126354603 Functional Loss - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49913013 chr19:49913016 nonsynonymous SNV 0.075 1 24 hm5C_associated_SNPs_73402 0 0 0 0 2 CCDC155 chr19:49913016 3'AG 49913016 Downstream 1bp
chr16 46723645 46723645 1 + G A rs574592042 46723642 + 46723622 46723662 41 GGTCGGAGCTGATCGGGCGCCTAGCCCCGCGCCTGGGCCTC GGTCGGAGCTGATCGGGCGCCTAACCCCGCGCCTGGGCCTC < 41bp 0.732482131033998 0.487638538680287 0.6100704 0.5672076 prediction 0.464964262067995 Functional Loss - ORC6 ENSG00000091651 CDS Human protein_coding chr16:46723642 chr16:46723645 nonsynonymous SNV 0.011 4 24 hm5C_associated_SNPs_73406 0 0 1 0 2 ORC6 chr16:46723682 5'GT 46723682 Upstream 38bp
chr16 46723645 46723645 1 + G A rs574592042 46723642 + 46723622 46723662 41 GGTCGGAGCTGATCGGGCGCCTAGCCCCGCGCCTGGGCCTC GGTCGGAGCTGATCGGGCGCCTAACCCCGCGCCTGGGCCTC < 41bp 0.732482131033998 0.487638538680287 0.6100704 0.5672076 prediction 0.464964262067995 Functional Loss - ORC6 ENSG00000091651 CDS Human protein_coding chr16:46723642 chr16:46723645 nonsynonymous SNV 0.011 4 24 hm5C_associated_SNPs_73406 0 0 1 0 2 ORC6 chr16:46723741 5'GT 46723741 Upstream 97bp
chr1 16350331 16350331 1 + T C LIHC 16350330 + 16350310 16350350 41 TAAAGCAGAAGGTGTTCCGCCTGGGAGAAGACTGGTACTTC TAAAGCAGAAGGTGTTCCGCCCGGGAGAAGACTGGTACTTC < 41bp 0.7479383355327 0.515470627224166 0.3988361 0.5699835 prediction 0.464935416617069 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16350330 chr1:16350331 nonsynonymous SNV 0.093 2 22 hm5C_associated_SNPs_73412 0 0 0 0 2 CLCNKA chr1:16350295 3'AG 16350295 Downstream 37bp
chr1 16350331 16350331 1 + T C LIHC 16350330 + 16350310 16350350 41 TAAAGCAGAAGGTGTTCCGCCTGGGAGAAGACTGGTACTTC TAAAGCAGAAGGTGTTCCGCCCGGGAGAAGACTGGTACTTC < 41bp 0.7479383355327 0.515470627224166 0.3988361 0.5699835 prediction 0.464935416617069 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16350330 chr1:16350331 nonsynonymous SNV 0.093 2 22 hm5C_associated_SNPs_73412 0 0 0 0 2 CLCNKA chr1:16350423 5'GT 16350423 Upstream 93bp
chr19 55593493 55593493 1 + C T HNSC 55593491 + 55593471 55593511 41 ACGCTGCGGGCCAAGCCGCCCTCGGAGGCCGAGTACACCGA ACGCTGCGGGCCAAGCCGCCCTTGGAGGCCGAGTACACCGA < 41bp 0.732465607067343 0.47183864626258 0.16394833 0.0898923 prediction 0.464931214134686 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55593491 chr19:55593493 nonsynonymous SNV 0.938 0 23 hm5C_associated_SNPs_73414 0 0 0 0 2 EPS8L1 chr19:55593460 3'AG 55593460 Downstream 34bp
chr19 55593493 55593493 1 + C T HNSC 55593491 + 55593471 55593511 41 ACGCTGCGGGCCAAGCCGCCCTCGGAGGCCGAGTACACCGA ACGCTGCGGGCCAAGCCGCCCTTGGAGGCCGAGTACACCGA < 41bp 0.732465607067343 0.47183864626258 0.16394833 0.0898923 prediction 0.464931214134686 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55593491 chr19:55593493 nonsynonymous SNV 0.938 0 23 hm5C_associated_SNPs_73414 0 0 0 0 2 EPS8L1 chr19:55593548 5'GT 55593548 Upstream 56bp
chr11 34156814 34156814 1 + G T BLCA 34156812 + 34156792 34156832 41 AAAAGGTCCTTGAGACACCACAGGAAATTCACACCGTAAGC AAAAGGTCCTTGAGACACCACATGAAATTCACACCGTAAGC < 41bp 0.732463931186662 0.381275031906777 0.6634542 0.14866117 prediction 0.464927862373324 Functional Loss - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34156812 chr11:34156814 nonsynonymous SNV 0.128 0 23 hm5C_associated_SNPs_73415 0 0 1 0 2 NAT10 chr11:34156722 3'AG 34156722 Downstream 93bp
chr11 34156814 34156814 1 + G T BLCA 34156812 + 34156792 34156832 41 AAAAGGTCCTTGAGACACCACAGGAAATTCACACCGTAAGC AAAAGGTCCTTGAGACACCACATGAAATTCACACCGTAAGC < 41bp 0.732463931186662 0.381275031906777 0.6634542 0.14866117 prediction 0.464927862373324 Functional Loss - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34156812 chr11:34156814 nonsynonymous SNV 0.128 0 23 hm5C_associated_SNPs_73415 0 0 1 0 2 NAT10 chr11:34156838 5'GT 34156838 Upstream 25bp
chr15 90809556 90809556 1 + G T UCEC 90809554 + 90809534 90809574 41 AGAAACAAGCAATCCGATTCCAGAAAATTCGGAGGCAAATG AGAAACAAGCAATCCGATTCCATAAAATTCGGAGGCAAATG < 41bp 0.789129423901625 0.556667352787171 0.82375294 0.31038305 prediction 0.464924142228909 Functional Loss - NGRN ENSG00000182768 CDS Human protein_coding chr15:90809554 chr15:90809556 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_73416 0 0 1 0 2 NGRN chr15:90809520 3'AG 90809520 Downstream 37bp
chr15 90809556 90809556 1 + G T UCEC 90809554 + 90809534 90809574 41 AGAAACAAGCAATCCGATTCCAGAAAATTCGGAGGCAAATG AGAAACAAGCAATCCGATTCCATAAAATTCGGAGGCAAATG < 41bp 0.789129423901625 0.556667352787171 0.82375294 0.31038305 prediction 0.464924142228909 Functional Loss - NGRN ENSG00000182768 CDS Human protein_coding chr15:90809554 chr15:90809556 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_73416 0 0 1 0 2 NGRN chr15:90809630 5'GT 90809630 Upstream 75bp
chr9 35749850 35749850 1 + C T BLCA 35749848 + 35749828 35749868 41 GTCACCAACCCCCTTCCGCCCACGGCCACTTCTGCATCCAG GTCACCAACCCCCTTCCGCCCATGGCCACTTCTGCATCCAG < 41bp 0.770077439213246 0.537619382699063 0.09474796 0.06617957 prediction 0.464916113028367 Functional Loss - RGP1 ENSG00000107185 CDS Human protein_coding chr9:35749848 chr9:35749850 nonsynonymous SNV 0.704 0 23 hm5C_associated_SNPs_73419 0 0 1 0 1 RGP1 chr9:35749868 5'GT 35749868 Upstream 19bp
chr17 7350169 7350169 1 + G A UCEC 7350166 + 7350146 7350186 41 CACTAGGAGTGGACTGACTACAGGCTGAGCTGGGACCCTGC CACTAGGAGTGGACTGACTACAGACTGAGCTGGGACCCTGC < 41bp 0.732454526298572 0.485713045672511 0.57867885 0.1503264 prediction 0.464909052597145 Functional Loss - CHRNB1 ENSG00000170175 CDS Human protein_coding chr17:7350166 chr17:7350169 synonymous SNV . 0 24 hm5C_associated_SNPs_73420 0 0 1 0 2 CHRNB1 chr17:7350152 3'AG 7350152 Downstream 18bp
chr17 7350169 7350169 1 + G A UCEC 7350166 + 7350146 7350186 41 CACTAGGAGTGGACTGACTACAGGCTGAGCTGGGACCCTGC CACTAGGAGTGGACTGACTACAGACTGAGCTGGGACCCTGC < 41bp 0.732454526298572 0.485713045672511 0.57867885 0.1503264 prediction 0.464909052597145 Functional Loss - CHRNB1 ENSG00000170175 CDS Human protein_coding chr17:7350166 chr17:7350169 synonymous SNV . 0 24 hm5C_associated_SNPs_73420 0 0 1 0 2 CHRNB1 chr17:7350261 5'GT 7350261 Upstream 93bp
chr20 30193562 30193562 1 + G T CESC 30193560 + 30193540 30193580 41 CCCCCGGGGGCCGAGGGCTGCCGGTCCGGGCTCCGCTCAGC CCCCCGGGGGCCGAGGGCTGCCTGTCCGGGCTCCGCTCAGC < 41bp 0.73245408235782 0.372692417156333 0.3339268 0.041552663 prediction 0.464908164715639 Functional Loss - ID1 ENSG00000125968 CDS Human protein_coding chr20:30193560 chr20:30193562 synonymous SNV . 0 23 hm5C_associated_SNPs_73422 0 0 1 0 1 ID1 chr20:30193616 5'GT 30193616 Upstream 55bp
chr7 134261129 134261129 1 + G A LGG 134261126 + 134261106 134261146 41 AACCTGAGGACCCTTCCCTGCTGGAGGATCCCAAGATTAAG AACCTGAGGACCCTTCCCTGCTGAAGGATCCCAAGATTAAG < 41bp 0.735478964680276 0.50302583870428 0.40632024 0.3314404 prediction 0.464906251951992 Functional Loss - AKR1B15 ENSG00000227471 CDS Human protein_coding chr7:134261126 chr7:134261129 nonsynonymous SNV 0.012 0 24 hm5C_associated_SNPs_73424 0 0 0 0 2 AKR1B15 chr7:134261101 3'AG 134261101 Downstream 29bp
chr7 134261129 134261129 1 + G A LGG 134261126 + 134261106 134261146 41 AACCTGAGGACCCTTCCCTGCTGGAGGATCCCAAGATTAAG AACCTGAGGACCCTTCCCTGCTGAAGGATCCCAAGATTAAG < 41bp 0.735478964680276 0.50302583870428 0.40632024 0.3314404 prediction 0.464906251951992 Functional Loss - AKR1B15 ENSG00000227471 CDS Human protein_coding chr7:134261126 chr7:134261129 nonsynonymous SNV 0.012 0 24 hm5C_associated_SNPs_73424 0 0 0 0 2 AKR1B15 chr7:134261182 5'GT 134261182 Upstream 54bp
chr11 65417519 65417519 1 + G A ESCA 65417516 + 65417496 65417536 41 CCATTCTGGAGTCGCTGTCCCGAGAGGGTGAGGCCACCAGG CCATTCTGGAGTCGCTGTCCCGAAAGGGTGAGGCCACCAGG < 41bp 0.732449652623513 0.484141370793433 0.8948282 0.2943763 prediction 0.464899305247026 Functional Loss - SIPA1 ENSG00000213445 CDS Human protein_coding chr11:65417516 chr11:65417519 nonsynonymous SNV 0.990 2 24 hm5C_associated_SNPs_73425 0 0 1 0 1 SIPA1 chr11:65417421 3'AG 65417421 Downstream 99bp
chr11 63996741 63996741 1 + T C UCEC 63996740 + 63996720 63996760 41 TGAACCTGCCGCTGCTCACCCTGAGCCAGCCCCTGCTGTTG TGAACCTGCCGCTGCTCACCCCGAGCCAGCCCCTGCTGTTG < 41bp 0.73244281414297 0.494485311214471 0.39794412 0.8862825 prediction 0.46488562828594 Functional Loss - NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63996740 chr11:63996741 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_73426 0 0 0 0 2 NUDT22 chr11:63996719 3'AG 63996719 Downstream 23bp
chr11 63996741 63996741 1 + T C UCEC 63996740 + 63996720 63996760 41 TGAACCTGCCGCTGCTCACCCTGAGCCAGCCCCTGCTGTTG TGAACCTGCCGCTGCTCACCCCGAGCCAGCCCCTGCTGTTG < 41bp 0.73244281414297 0.494485311214471 0.39794412 0.8862825 prediction 0.46488562828594 Functional Loss - NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63996740 chr11:63996741 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_73426 0 0 0 0 2 NUDT22 chr11:63996816 5'GT 63996816 Upstream 76bp
chr17 42429583 42429583 1 + G T THCA 42429580 + 42429560 42429600 41 GGGCAGACCTGCTGCCCGAGCCTGGGTGGGAGCTGGGCCTG GGGCAGACCTGCTGCCCGAGCCTTGGTGGGAGCTGGGCCTG < 41bp 0.732440748766386 0.327204401241343 0.90398014 0.68852973 prediction 0.464881497532771 Functional Loss - GRN ENSG00000030582 CDS Human protein_coding chr17:42429580 chr17:42429583 synonymous SNV . 0 24 hm5C_associated_SNPs_73427 0 0 1 0 1 GRN chr17:42429616 5'GT 42429616 Upstream 34bp
chr19 48244156 48244156 1 + G A UCEC 48244153 + 48244133 48244173 41 CACAGGAGCTGCTGATGGCGCACGACTTCACCAAGTTTCAC CACAGGAGCTGCTGATGGCGCACAACTTCACCAAGTTTCAC < 41bp 0.757918856402551 0.525479355171669 0.067611426 0.025887012 prediction 0.464879002461764 Functional Loss - EHD2 ENSG00000024422 CDS Human protein_coding chr19:48244153 chr19:48244156 nonsynonymous SNV 0.981 3 24 hm5C_associated_SNPs_73428 0 0 0 0 1 EHD2 chr19:48244138 3'AG 48244138 Downstream 19bp
chr19 4429578 4429578 1 + C T UCEC 4429576 + 4429556 4429596 41 AAGAAGACGGCACTCATCCGCGCGCGAGACCCCTGGGCCCA AAGAAGACGGCACTCATCCGCGTGCGAGACCCCTGGGCCCA < 41bp 0.732435758113168 0.475975227217026 0.49736387 0.47779757 prediction 0.464871516226335 Functional Loss - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4429576 chr19:4429578 nonsynonymous SNV 0.005 3 23 hm5C_associated_SNPs_73429 0 0 1 0 1 CHAF1A chr19:4429603 5'GT 4429603 Upstream 26bp
chr8 19819643 19819643 1 + G T THYM 19819640 + 19819620 19819660 41 CCACAGGGTGATCTTCTGTTCTAGGGAGAAAGTGTCTCATT CCACAGGGTGATCTTCTGTTCTATGGAGAAAGTGTCTCATT < 41bp 0.732433498850542 0.342324575112951 0.121793896 0.18018174 prediction 0.464866997701085 Functional Loss - LPL ENSG00000175445 CDS Human protein_coding chr8:19819640 chr8:19819643 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_73432 0 0 0 0 1 LPL chr8:19819730 5'GT 19819730 Upstream 88bp
chr1 23110922 23110922 1 + C T PAAD 23110920 + 23110900 23110940 41 GGCTACGATGAGAACATGAACACGATCCGCACGTACCAGGT GGCTACGATGAGAACATGAACATGATCCGCACGTACCAGGT < 41bp 0.732433058484583 0.451611296380793 0.1665838 0.15017131 prediction 0.464866116969167 Functional Loss - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23110920 chr1:23110922 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_73433 0 0 0 0 1 EPHB2 chr1:23110885 3'AG 23110885 Downstream 38bp
chr22 25280157 25280157 1 + G A UCEC 25280154 + 25280134 25280174 41 GGATCTGGGAGCAGTACCTTCACGACAGCACAGTAAGGCTT GGATCTGGGAGCAGTACCTTCACAACAGCACAGTAAGGCTT < 41bp 0.77342433707407 0.540991846269908 0.24988624 0.23288223 prediction 0.464864981608325 Functional Loss - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25280154 chr22:25280157 nonsynonymous SNV 0.662 3 24 hm5C_associated_SNPs_73434 0 0 0 0 1 SGSM1 chr22:25280165 5'GT 25280165 Upstream 9bp
chr12 107113803 107113803 1 + G A STAD 107113800 + 107113780 107113820 41 TCGAGTCCTACATTGAGTGGCTGGATACCATGGTTGACCGC TCGAGTCCTACATTGAGTGGCTGAATACCATGGTTGACCGC < 41bp 0.746473249889814 0.514041980970262 0.087365925 0.12429738 prediction 0.464862537839105 Functional Loss - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107113800 chr12:107113803 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_73435 0 0 0 0 2 RFX4 chr12:107113738 3'AG 107113738 Downstream 66bp
chr12 107113803 107113803 1 + G A STAD 107113800 + 107113780 107113820 41 TCGAGTCCTACATTGAGTGGCTGGATACCATGGTTGACCGC TCGAGTCCTACATTGAGTGGCTGAATACCATGGTTGACCGC < 41bp 0.746473249889814 0.514041980970262 0.087365925 0.12429738 prediction 0.464862537839105 Functional Loss - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107113800 chr12:107113803 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_73435 0 0 0 0 2 RFX4 chr12:107113832 5'GT 107113832 Upstream 30bp
chr9 66553678 66553678 1 + C T UCEC 66553676 + 66553656 66553696 41 TCTAGTGCTTTTTTCCAGATCTCGATCCCAAACTCCCTCCT TCTAGTGCTTTTTTCCAGATCTTGATCCCAAACTCCCTCCT < 41bp 0.734004968677866 0.501574781765718 0.13805619 0.05278918 prediction 0.464860373824294 Functional Loss - LOC403323 ENSG00000170161;ENSG00000234665 ncRNA_exonic Human other chr9:66553676 chr9:66553678 . . 0 23 hm5C_associated_SNPs_73436 0 0 0 0 1 LOC403323 chr9:66553674 3'AG 66553674 Downstream 5bp
chr1 74905216 74905216 1 + C T UCEC 74905214 + 74905194 74905234 41 TGAGGTGTTCACGCAGTGCACTCGGTACACCATCAAAGCAG TGAGGTGTTCACGCAGTGCACTTGGTACACCATCAAAGCAG < 41bp 0.831284276219983 0.598855010688837 0.25992066 0.26545614 prediction 0.464858531062293 Functional Loss - FPGT-TNNI3K;TNNI3K ENSG00000116783;ENSG00000259030 CDS Human other chr1:74905214 chr1:74905216 nonsynonymous SNV 0.810 4 23 hm5C_associated_SNPs_73437 0 0 0 0 2 FPGT-TNNI3K;TNNI3K chr1:74905174 3'AG 74905174 Downstream 43bp
chr1 74905216 74905216 1 + C T UCEC 74905214 + 74905194 74905234 41 TGAGGTGTTCACGCAGTGCACTCGGTACACCATCAAAGCAG TGAGGTGTTCACGCAGTGCACTTGGTACACCATCAAAGCAG < 41bp 0.831284276219983 0.598855010688837 0.25992066 0.26545614 prediction 0.464858531062293 Functional Loss - FPGT-TNNI3K;TNNI3K ENSG00000116783;ENSG00000259030 CDS Human other chr1:74905214 chr1:74905216 nonsynonymous SNV 0.810 4 23 hm5C_associated_SNPs_73437 0 0 0 0 2 FPGT-TNNI3K;TNNI3K chr1:74905306 5'GT 74905306 Upstream 91bp
chr3 157155333 157155333 1 + G A STAD 157155330 + 157155310 157155350 41 TGCGCCTGCGGTCAGGAGCACTCGGAATGGGACAAGCTCTT TGCGCCTGCGGTCAGGAGCACTCAGAATGGGACAAGCTCTT < 41bp 0.745217358856229 0.512789583955133 0.1998922 0.04910654 prediction 0.46485554980219 Functional Loss - PTX3 ENSG00000163661 CDS Human protein_coding chr3:157155330 chr3:157155333 synonymous SNV . 0 24 hm5C_associated_SNPs_73438 0 0 0 0 1 PTX3 chr3:157155302 3'AG 157155302 Downstream 32bp
chr1 150484918 150484918 1 + C T UCEC 150484916 + 150484896 150484936 41 CCGCCACCCTCCCAGCCCTACTCGGGATGAGTGCTTTGCCC CCGCCACCCTCCCAGCCCTACTTGGGATGAGTGCTTTGCCC < 41bp 0.828992920597758 0.596566306389896 0.41799662 0.35954213 prediction 0.464853228415724 Functional Loss - ECM1 ENSG00000143369 CDS Human protein_coding chr1:150484916 chr1:150484918 nonsynonymous SNV 0.721 5 23 hm5C_associated_SNPs_73439 0 0 1 0 1 ECM1 chr1:150484828 3'AG 150484828 Downstream 91bp
chr21 45825100 45825100 1 + G A SKCM 45825097 + 45825077 45825117 41 TCAGTGACTTCTGGAATAAGCTGGACGTCGGCGCAATCTTG TCAGTGACTTCTGGAATAAGCTGAACGTCGGCGCAATCTTG < 41bp 0.732420933394468 0.485119042063863 0.5207912 0.30776364 prediction 0.464841866788936 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45825097 chr21:45825100 nonsynonymous SNV 0.718 4 24 hm5C_associated_SNPs_73443 0 0 0 0 3 TRPM2 chr21:45825022 3'AG 45825022 Downstream 79bp
chr21 45825100 45825100 1 + G A SKCM 45825097 + 45825077 45825117 41 TCAGTGACTTCTGGAATAAGCTGGACGTCGGCGCAATCTTG TCAGTGACTTCTGGAATAAGCTGAACGTCGGCGCAATCTTG < 41bp 0.732420933394468 0.485119042063863 0.5207912 0.30776364 prediction 0.464841866788936 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45825097 chr21:45825100 nonsynonymous SNV 0.718 4 24 hm5C_associated_SNPs_73443 0 0 0 0 3 TRPM2 chr21:45825025 3'AG 45825025 Downstream 76bp
chr21 45825100 45825100 1 + G A SKCM 45825097 + 45825077 45825117 41 TCAGTGACTTCTGGAATAAGCTGGACGTCGGCGCAATCTTG TCAGTGACTTCTGGAATAAGCTGAACGTCGGCGCAATCTTG < 41bp 0.732420933394468 0.485119042063863 0.5207912 0.30776364 prediction 0.464841866788936 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45825097 chr21:45825100 nonsynonymous SNV 0.718 4 24 hm5C_associated_SNPs_73443 0 0 0 0 3 TRPM2 chr21:45825143 5'GT 45825143 Upstream 44bp
chr4 15539713 15539713 1 + G A OV 15539710 + 15539690 15539730 41 CCTTGGGAGCCCACGCTGGTCCCGGAGCTAAGCCTGGCAGG CCTTGGGAGCCCACGCTGGTCCCAGAGCTAAGCCTGGCAGG < 41bp 0.7324170794759 0.49006719362331 0.7400096 0.27848065 prediction 0.464834158951799 Functional Loss - CC2D2A ENSG00000048342 CDS Human protein_coding chr4:15539710 chr4:15539713 synonymous SNV . 0 24 hm5C_associated_SNPs_73447 1 0 0 0 1 CC2D2A chr4:15539760 5'GT 15539760 Upstream 48bp
chr13 113897351 113897351 1 + A C SKCM 113897350 + 113897330 113897370 41 GTCCAAGACCTGTTGGACTTCAAGGACAAGGTGGACCACGT GTCCAAGACCTGTTGGACTTCCAGGACAAGGTGGACCACGT < 41bp 0.781981669196763 0.549564604880682 0.5410608 0.58623147 prediction 0.464834128632163 Functional Loss - CUL4A ENSG00000139842 CDS Human protein_coding chr13:113897350 chr13:113897351 nonsynonymous SNV 0.928 2 22 hm5C_associated_SNPs_73448 0 0 1 0 1 CUL4A chr13:113897282 3'AG 113897282 Downstream 70bp
chr3 3170829 3170829 1 + C T rs368274081 3170827 + 3170807 3170847 41 TCACAATGAAGTTGCAGTCTCCCGAATTCCAGTCACTTTTC TCACAATGAAGTTGCAGTCTCCTGAATTCCAGTCACTTTTC < 41bp 0.834615934397391 0.602205086071807 0.12939945 0.068399906 prediction 0.464821696651169 Functional Loss - TRNT1 ENSG00000072756 CDS Human protein_coding chr3:3170827 chr3:3170829 synonymous SNV . 0 23 hm5C_associated_SNPs_73451 1 0 1 3 1 TRNT1 chr3:3170872 5'GT 3170872 Upstream 44bp
chr16 10855244 10855244 1 + G A CESC 10855241 + 10855221 10855261 41 GAGGTGTCACTCCAGGATGTCCGGAAAGAAATCAACTTCTG GAGGTGTCACTCCAGGATGTCCGAAAAGAAATCAACTTCTG < 41bp 0.732408880903009 0.496297611660132 0.33205563 0.06283605 prediction 0.464817761806019 Functional Loss - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10855241 chr16:10855244 synonymous SNV . 0 24 hm5C_associated_SNPs_73452 0 0 0 0 2 NUBP1 chr16:10855221 3'AG 10855221 Downstream 24bp
chr16 10855244 10855244 1 + G A CESC 10855241 + 10855221 10855261 41 GAGGTGTCACTCCAGGATGTCCGGAAAGAAATCAACTTCTG GAGGTGTCACTCCAGGATGTCCGAAAAGAAATCAACTTCTG < 41bp 0.732408880903009 0.496297611660132 0.33205563 0.06283605 prediction 0.464817761806019 Functional Loss - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10855241 chr16:10855244 synonymous SNV . 0 24 hm5C_associated_SNPs_73452 0 0 0 0 2 NUBP1 chr16:10855331 5'GT 10855331 Upstream 88bp
chr2 39934218 39934218 1 + G A SKCM 39934215 + 39934195 39934235 41 GAAGAATCACTGCTGGCTTCCTCGGCATGGCCGTAGCCGTC GAAGAATCACTGCTGGCTTCCTCAGCATGGCCGTAGCCGTC < 41bp 0.762371523058238 0.529962779827819 0.07399964 0.13234246 prediction 0.464817486460839 Functional Loss - TMEM178A ENSG00000152154 CDS Human protein_coding chr2:39934215 chr2:39934218 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_73453 0 0 0 0 1 TMEM178A chr2:39934189 3'AG 39934189 Downstream 30bp
chr20 43042366 43042366 1 + C T GBM 43042364 + 43042344 43042384 41 TGAGCGGGACCGGATCAGCACTCGAAGGTCAAGCTATGAGG TGAGCGGGACCGGATCAGCACTTGAAGGTCAAGCTATGAGG < 41bp 0.846353160020511 0.613945111695371 0.509585 0.10879168 prediction 0.46481609665028 Functional Loss - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43042364 chr20:43042366 stopgain 0.287 1 23 hm5C_associated_SNPs_73454 0 0 1 0 2 HNF4A chr20:43042334 3'AG 43042334 Downstream 33bp
chr20 43042366 43042366 1 + C T GBM 43042364 + 43042344 43042384 41 TGAGCGGGACCGGATCAGCACTCGAAGGTCAAGCTATGAGG TGAGCGGGACCGGATCAGCACTTGAAGGTCAAGCTATGAGG < 41bp 0.846353160020511 0.613945111695371 0.509585 0.10879168 prediction 0.46481609665028 Functional Loss - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43042364 chr20:43042366 stopgain 0.287 1 23 hm5C_associated_SNPs_73454 0 0 1 0 2 HNF4A chr20:43042440 5'GT 43042440 Upstream 75bp
chr6 30877747 30877747 1 + G T UCEC 30877745 + 30877725 30877765 41 ACAGGGCTGCTGAGCGGCCTCCGGATCTGGCACACACAGCT ACAGGGCTGCTGAGCGGCCTCCTGATCTGGCACACACAGCT < 41bp 0.848086715290471 0.615680369942766 0.8525281 0.17967495 prediction 0.464812690695411 Functional Loss - GTF2H4 ENSG00000213780 CDS Human protein_coding chr6:30877745 chr6:30877747 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_73456 0 0 1 0 2 GTF2H4 chr6:30877709 3'AG 30877709 Downstream 39bp
chr6 30877747 30877747 1 + G T UCEC 30877745 + 30877725 30877765 41 ACAGGGCTGCTGAGCGGCCTCCGGATCTGGCACACACAGCT ACAGGGCTGCTGAGCGGCCTCCTGATCTGGCACACACAGCT < 41bp 0.848086715290471 0.615680369942766 0.8525281 0.17967495 prediction 0.464812690695411 Functional Loss - GTF2H4 ENSG00000213780 CDS Human protein_coding chr6:30877745 chr6:30877747 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_73456 0 0 1 0 2 GTF2H4 chr6:30877840 5'GT 30877840 Upstream 94bp
chr17 78084769 78084769 1 + G A rs1042396 78084766 + 78084746 78084786 41 AACGAGCCTTCCAACTTCATCAGGGGCTCTGAGGACGGCTG AACGAGCCTTCCAACTTCATCAGAGGCTCTGAGGACGGCTG < 41bp 0.782734213438458 0.550331010697152 0.9175676 0.87797993 prediction 0.464806405482612 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78084766 chr17:78084769 synonymous SNV . 0 24 hm5C_associated_SNPs_73458 2 0 0 0 2 GAA chr17:78084740 3'AG 78084740 Downstream 30bp
chr17 78084769 78084769 1 + G A rs1042396 78084766 + 78084746 78084786 41 AACGAGCCTTCCAACTTCATCAGGGGCTCTGAGGACGGCTG AACGAGCCTTCCAACTTCATCAGAGGCTCTGAGGACGGCTG < 41bp 0.782734213438458 0.550331010697152 0.9175676 0.87797993 prediction 0.464806405482612 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78084766 chr17:78084769 synonymous SNV . 0 24 hm5C_associated_SNPs_73458 2 0 0 0 2 GAA chr17:78084824 5'GT 78084824 Upstream 56bp
chr17 48560755 48560755 1 + G A rs200350428 48560752 + 48560732 48560772 41 TGGAGGCCACACCCGGGAGGCTCGGATCCAGACACTGGAGC TGGAGGCCACACCCGGGAGGCTCAGATCCAGACACTGGAGC < 41bp 0.732385869015688 0.491603374657962 0.5343069 0.3531906 prediction 0.464771738031377 Functional Loss - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48560752 chr17:48560755 nonsynonymous SNV 0.811 2 24 hm5C_associated_SNPs_73464 0 0 1 3 2 RSAD1 chr17:48560701 3'AG 48560701 Downstream 55bp
chr17 48560755 48560755 1 + G A rs200350428 48560752 + 48560732 48560772 41 TGGAGGCCACACCCGGGAGGCTCGGATCCAGACACTGGAGC TGGAGGCCACACCCGGGAGGCTCAGATCCAGACACTGGAGC < 41bp 0.732385869015688 0.491603374657962 0.5343069 0.3531906 prediction 0.464771738031377 Functional Loss - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48560752 chr17:48560755 nonsynonymous SNV 0.811 2 24 hm5C_associated_SNPs_73464 0 0 1 3 2 RSAD1 chr17:48560848 5'GT 48560848 Upstream 94bp
chr1 15541892 15541892 1 + G C LUSC 15541891 + 15541871 15541911 41 CCTGGCCCATGTCCAGCACCCGACAGGCGCTGGGCCTCACG CCTGGCCCATGTCCAGCACCCCACAGGCGCTGGGCCTCACG < 41bp 0.87749366303833 0.645111575388912 0.58967304 0.31872016 prediction 0.464764175298835 Functional Loss - TMEM51 ENSG00000171729 CDS Human protein_coding chr1:15541891 chr1:15541892 synonymous SNV . 0 22 hm5C_associated_SNPs_73466 0 0 0 0 1 TMEM51 chr1:15541927 5'GT 15541927 Upstream 36bp
chr6 88136305 88136305 1 + T C UCEC 88136304 + 88136284 88136324 41 CAAAACAGTTAGGAGCCCATCTGGAACAACTAAAAATGACC CAAAACAGTTAGGAGCCCATCCGGAACAACTAAAAATGACC < 41bp 0.73238025678564 0.477068873430087 0.23949155 0.17680487 prediction 0.464760513571279 Functional Loss - CFAP206 ENSG00000213204;ENSG00000272514 CDS Human other chr6:88136304 chr6:88136305 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_73469 0 0 0 0 2 CFAP206 chr6:88136244 3'AG 88136244 Downstream 62bp
chr6 88136305 88136305 1 + T C UCEC 88136304 + 88136284 88136324 41 CAAAACAGTTAGGAGCCCATCTGGAACAACTAAAAATGACC CAAAACAGTTAGGAGCCCATCCGGAACAACTAAAAATGACC < 41bp 0.73238025678564 0.477068873430087 0.23949155 0.17680487 prediction 0.464760513571279 Functional Loss - CFAP206 ENSG00000213204;ENSG00000272514 CDS Human other chr6:88136304 chr6:88136305 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_73469 0 0 0 0 2 CFAP206 chr6:88136363 5'GT 88136363 Upstream 59bp
chrX 103294940 103294940 1 + G A CESC 103294937 + 103294917 103294957 41 TGCCGGGGAAGATGGGCAAGCTCGCCGAGGCCCAGGGCACG TGCCGGGGAAGATGGGCAAGCTCACCGAGGCCCAGGGCACG < 41bp 0.732378798246802 0.493281913726296 0.4043084 0.44775915 prediction 0.464757596493603 Functional Loss - H2BFM ENSG00000101812 CDS Human protein_coding chrX:103294937 chrX:103294940 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_73470 0 0 0 0 1 H2BFM chrX:103294971 5'GT 103294971 Upstream 32bp
chr12 3129934 3129934 1 + G T LUAD 3129931 + 3129911 3129951 41 TCCTGGAGCAGCAGCAGGACCCGGACACGGTAGGTCCTGGC TCCTGGAGCAGCAGCAGGACCCGTACACGGTAGGTCCTGGC < 41bp 0.732370576232664 0.333336402458972 0.46730447 0.2059676 prediction 0.464741152465328 Functional Loss - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3129931 chr12:3129934 nonsynonymous SNV 0.730 3 24 hm5C_associated_SNPs_73472 0 0 0 0 1 TEAD4 chr12:3129939 5'GT 3129939 Upstream 6bp
chr22 41617260 41617260 1 + C T CESC 41617258 + 41617238 41617278 41 CTCATGAAACGGCTGGTGGGCTCCAGGACGCTTCCCGTGGA CTCATGAAACGGCTGGTGGGCTTCAGGACGCTTCCCGTGGA < 41bp 0.847635862675882 0.615265741115163 0.77878344 0.44850373 prediction 0.464740243121438 Functional Loss - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41617258 chr22:41617260 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_73473 0 0 1 0 2 L3MBTL2 chr22:41617203 3'AG 41617203 Downstream 58bp
chr22 41617260 41617260 1 + C T CESC 41617258 + 41617238 41617278 41 CTCATGAAACGGCTGGTGGGCTCCAGGACGCTTCCCGTGGA CTCATGAAACGGCTGGTGGGCTTCAGGACGCTTCCCGTGGA < 41bp 0.847635862675882 0.615265741115163 0.77878344 0.44850373 prediction 0.464740243121438 Functional Loss - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41617258 chr22:41617260 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_73473 0 0 1 0 2 L3MBTL2 chr22:41617291 5'GT 41617291 Upstream 32bp
chr3 118892471 118892471 1 + G T rs17281535 118892469 + 118892449 118892489 41 AGCGGGCCCTACCGTGTGCGCAGAAAGAGGAGGCGCTGTGA AGCGGGCCCTACCGTGTGCGCATAAAGAGGAGGCGCTGTGA < 41bp 0.871981742884442 0.639613242613585 0.4679244 0.31387484 prediction 0.464737000541715 Functional Loss - UPK1B ENSG00000114638 UTR5 Human protein_coding chr3:118892469 chr3:118892471 . . 0 23 hm5C_associated_SNPs_73474 0 0 0 0 1 UPK1B chr3:118892485 5'GT 118892485 Upstream 15bp
chr2 172944869 172944869 1 + G A SKCM 172944866 + 172944846 172944886 41 CCTCTTACAGAGCCAATCATCACGGAGGGATCCCCTGAATT CCTCTTACAGAGCCAATCATCACAGAGGGATCCCCTGAATT < 41bp 0.73438529503565 0.502021737234936 0.74154323 0.35251886 prediction 0.464727115601427 Functional Loss - METAP1D ENSG00000172878 CDS Human protein_coding chr2:172944866 chr2:172944869 synonymous SNV . 0 24 hm5C_associated_SNPs_73475 0 0 0 0 2 METAP1D chr2:172944856 3'AG 172944856 Downstream 14bp
chr2 172944869 172944869 1 + G A SKCM 172944866 + 172944846 172944886 41 CCTCTTACAGAGCCAATCATCACGGAGGGATCCCCTGAATT CCTCTTACAGAGCCAATCATCACAGAGGGATCCCCTGAATT < 41bp 0.73438529503565 0.502021737234936 0.74154323 0.35251886 prediction 0.464727115601427 Functional Loss - METAP1D ENSG00000172878 CDS Human protein_coding chr2:172944866 chr2:172944869 synonymous SNV . 0 24 hm5C_associated_SNPs_73475 0 0 0 0 2 METAP1D chr2:172944934 5'GT 172944934 Upstream 66bp
chr19 58549514 58549514 1 + C T ESCA 58549512 + 58549492 58549532 41 CTGGGTGCAGTCACAGGGCCCCCGAAGCTGCAGGGAGGCCG CTGGGTGCAGTCACAGGGCCCCTGAAGCTGCAGGGAGGCCG < 41bp 0.732363497330458 0.481978432515271 0.086759925 0.14697328 prediction 0.464726994660917 Functional Loss - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58549512 chr19:58549514 stopgain 0.000 0 23 hm5C_associated_SNPs_73476 0 0 0 0 1 ZSCAN1 chr19:58549574 5'GT 58549574 Upstream 61bp
chr1 160098475 160098475 1 + C T STAD 160098473 + 160098453 160098493 41 CCTGACAGCCAAGCGCATGGCACGGAAGAACTGCCTGGTGA CCTGACAGCCAAGCGCATGGCATGGAAGAACTGCCTGGTGA < 41bp 0.823193066167301 0.590832144668306 0.30967516 0.38280573 prediction 0.46472184299799 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160098473 chr1:160098475 nonsynonymous SNV 0.901 5 23 hm5C_associated_SNPs_73477 0 0 0 0 1 ATP1A2 chr1:160098442 3'AG 160098442 Downstream 34bp
chr3 183824060 183824060 1 + C T COAD 183824058 + 183824038 183824078 41 CTGCTGCTCCACTGCAACAGCCCGGGGAGATGCTGTCCCAC CTGCTGCTCCACTGCAACAGCCTGGGGAGATGCTGTCCCAC < 41bp 0.778275387522637 0.545916891537771 0.5815317 0.8672023 prediction 0.464716991969731 Functional Loss - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183824058 chr3:183824060 nonsynonymous SNV 0.310 1 23 hm5C_associated_SNPs_73479 0 0 0 0 1 HTR3E chr3:183824131 5'GT 183824131 Upstream 72bp
chr6 41754045 41754045 1 + G A COAD 41754042 + 41754022 41754062 41 GATGCAGGCTCGAGCTGGGCCGGGGCACTGGAAGGGCAGGC GATGCAGGCTCGAGCTGGGCCGGAGCACTGGAAGGGCAGGC < 41bp 0.771807984151669 0.539452582192067 0.75692636 0.50726956 prediction 0.464710803919203 Functional Loss - PRICKLE4 ENSG00000124593 CDS Human protein_coding chr6:41754042 chr6:41754045 synonymous SNV . 0 24 hm5C_associated_SNPs_73482 0 0 1 0 1 PRICKLE4 chr6:41754070 5'GT 41754070 Upstream 26bp
chr4 5448439 5448439 1 + G A UCEC 5448436 + 5448416 5448456 41 GGTGTACATGGACAGAGGCCCCGGATACTCGTACCCTGTCG GGTGTACATGGACAGAGGCCCCGAATACTCGTACCCTGTCG < 41bp 0.732351563725805 0.497138673047274 0.3671217 0.045900106 prediction 0.464703127451611 Functional Loss - STK32B ENSG00000152953 CDS Human protein_coding chr4:5448436 chr4:5448439 nonsynonymous SNV 0.840 3 24 hm5C_associated_SNPs_73483 0 0 0 0 2 STK32B chr4:5448400 3'AG 5448400 Downstream 40bp
chr4 5448439 5448439 1 + G A UCEC 5448436 + 5448416 5448456 41 GGTGTACATGGACAGAGGCCCCGGATACTCGTACCCTGTCG GGTGTACATGGACAGAGGCCCCGAATACTCGTACCCTGTCG < 41bp 0.732351563725805 0.497138673047274 0.3671217 0.045900106 prediction 0.464703127451611 Functional Loss - STK32B ENSG00000152953 CDS Human protein_coding chr4:5448436 chr4:5448439 nonsynonymous SNV 0.840 3 24 hm5C_associated_SNPs_73483 0 0 0 0 2 STK32B chr4:5448503 5'GT 5448503 Upstream 65bp
chr16 772362 772362 1 + G A ESCA 772359 + 772339 772379 41 GAGCTGCCTGCTGGGGCCCGCGTGGTGTCTGGGCGCTTCCC GAGCTGCCTGCTGGGGCCCGCGTAGTGTCTGGGCGCTTCCC < 41bp 0.753344003161525 0.520994314439988 0.54694486 0.08638531 prediction 0.464699377443075 Functional Loss - FAM173A ENSG00000103254 CDS Human protein_coding chr16:772359 chr16:772362 synonymous SNV . 0 24 hm5C_associated_SNPs_73484 0 0 1 0 1 FAM173A chr16:772309 3'AG 772309 Downstream 54bp
chr9 136501775 136501775 1 + G T SARC 136501772 + 136501752 136501792 41 TTTGGGATGTCCGACCGTGGCGAGCTTGAGAACGCAGATCT TTTGGGATGTCCGACCGTGGCGATCTTGAGAACGCAGATCT < 41bp 0.732348204640535 0.332010547179675 0.72077584 0.50583994 prediction 0.464696409281069 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136501772 chr9:136501775 nonsynonymous SNV 0.021 1 24 hm5C_associated_SNPs_73485 0 0 0 0 1 DBH chr9:136501832 5'GT 136501832 Upstream 58bp
chr20 43034785 43034785 1 + C T COAD 43034783 + 43034763 43034803 41 GCCATCTGCGGGGACCGGGCCACGGGCAAACACTACGGTGC GCCATCTGCGGGGACCGGGCCATGGGCAAACACTACGGTGC < 41bp 0.813946755992135 0.581600600708247 0.8752329 0.6541406 prediction 0.464692310567776 Functional Loss - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43034783 chr20:43034785 nonsynonymous SNV 0.706 5 23 hm5C_associated_SNPs_73486 0 0 1 0 2 HNF4A chr20:43034698 3'AG 43034698 Downstream 88bp
chr20 43034785 43034785 1 + C T COAD 43034783 + 43034763 43034803 41 GCCATCTGCGGGGACCGGGCCACGGGCAAACACTACGGTGC GCCATCTGCGGGGACCGGGCCATGGGCAAACACTACGGTGC < 41bp 0.813946755992135 0.581600600708247 0.8752329 0.6541406 prediction 0.464692310567776 Functional Loss - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43034783 chr20:43034785 nonsynonymous SNV 0.706 5 23 hm5C_associated_SNPs_73486 0 0 1 0 2 HNF4A chr20:43034872 5'GT 43034872 Upstream 88bp
chr14 105926780 105926780 1 + C T SKCM 105926778 + 105926758 105926798 41 CATGAGCGCCGCAGCTGCCTCCCGAGACATCACCCTGGTAA CATGAGCGCCGCAGCTGCCTCCTGAGACATCACCCTGGTAA < 41bp 0.817903730380572 0.585558123426948 0.114349335 0.1452457 prediction 0.464691213907247 Functional Loss - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105926778 chr14:105926780 stopgain 0.947 1 23 hm5C_associated_SNPs_73487 0 0 1 1 2 MTA1 chr14:105926695 3'AG 105926695 Downstream 86bp
chr14 105926780 105926780 1 + C T SKCM 105926778 + 105926758 105926798 41 CATGAGCGCCGCAGCTGCCTCCCGAGACATCACCCTGGTAA CATGAGCGCCGCAGCTGCCTCCTGAGACATCACCCTGGTAA < 41bp 0.817903730380572 0.585558123426948 0.114349335 0.1452457 prediction 0.464691213907247 Functional Loss - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105926778 chr14:105926780 stopgain 0.947 1 23 hm5C_associated_SNPs_73487 0 0 1 1 2 MTA1 chr14:105926794 5'GT 105926794 Upstream 15bp
chrX 48651632 48651632 1 + G A UCEC 48651629 + 48651609 48651649 41 ACCAACTGCCAGACGACCACCACGACACTGTGGCGGAGAAA ACCAACTGCCAGACGACCACCACAACACTGTGGCGGAGAAA < 41bp 0.761552658743792 0.529208704789077 0.0916315 0.18967697 prediction 0.46468790790943 Functional Loss - GATA1 ENSG00000102145 CDS Human protein_coding chrX:48651629 chrX:48651632 synonymous SNV . 0 24 hm5C_associated_SNPs_73488 0 0 0 0 2 GATA1 chrX:48651579 3'AG 48651579 Downstream 54bp
chrX 48651632 48651632 1 + G A UCEC 48651629 + 48651609 48651649 41 ACCAACTGCCAGACGACCACCACGACACTGTGGCGGAGAAA ACCAACTGCCAGACGACCACCACAACACTGTGGCGGAGAAA < 41bp 0.761552658743792 0.529208704789077 0.0916315 0.18967697 prediction 0.46468790790943 Functional Loss - GATA1 ENSG00000102145 CDS Human protein_coding chrX:48651629 chrX:48651632 synonymous SNV . 0 24 hm5C_associated_SNPs_73488 0 0 0 0 2 GATA1 chrX:48651704 5'GT 48651704 Upstream 73bp
chr7 72744265 72744265 1 + G A BLCA 72744262 + 72744242 72744282 41 GGAACGCTGGGCTGCCCTCCCTTGATCCCCCCAAACACCAC GGAACGCTGGGCTGCCCTCCCTTAATCCCCCCAAACACCAC < 41bp 0.746294947153989 0.513954279164984 0.009865284 0.01005137 prediction 0.464681335978012 Functional Loss - FKBP6 ENSG00000077800 CDS Human protein_coding chr7:72744262 chr7:72744265 synonymous SNV . 0 24 hm5C_associated_SNPs_73490 0 0 0 0 1 FKBP6 chr7:72744355 5'GT 72744355 Upstream 91bp
chr16 68772302 68772302 1 + G A UCEC 68772299 + 68772279 68772319 41 GGCGCCACCTGGAGAGAGGCCGCGTCCTGGGCAGAGGTGAG GGCGCCACCTGGAGAGAGGCCGCATCCTGGGCAGAGGTGAG < 41bp 0.732338920171452 0.488957975735864 0.5052441 0.4413753 prediction 0.464677840342903 Functional Loss - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68772299 chr16:68772302 nonsynonymous SNV 0.856 0 24 hm5C_associated_SNPs_73491 0 0 0 0 1 CDH1 chr16:68772314 5'GT 68772314 Upstream 13bp
chr9 140043533 140043533 1 + G T UCEC 140043530 + 140043510 140043550 41 TGCTGATGGAGGCGAAAGAGCTGGAGGCCCGGGTCATCATC TGCTGATGGAGGCGAAAGAGCTGTAGGCCCGGGTCATCATC < 41bp 0.875096483432304 0.642758393595644 0.6676157 0.13387004 prediction 0.46467617967332 Functional Loss - GRIN1 ENSG00000176884 CDS Human protein_coding chr9:140043530 chr9:140043533 stopgain 0.994 1 24 hm5C_associated_SNPs_73494 0 0 0 0 2 GRIN1 chr9:140043461 3'AG 140043461 Downstream 73bp
chr9 140043533 140043533 1 + G T UCEC 140043530 + 140043510 140043550 41 TGCTGATGGAGGCGAAAGAGCTGGAGGCCCGGGTCATCATC TGCTGATGGAGGCGAAAGAGCTGTAGGCCCGGGTCATCATC < 41bp 0.875096483432304 0.642758393595644 0.6676157 0.13387004 prediction 0.46467617967332 Functional Loss - GRIN1 ENSG00000176884 CDS Human protein_coding chr9:140043530 chr9:140043533 stopgain 0.994 1 24 hm5C_associated_SNPs_73494 0 0 0 0 2 GRIN1 chr9:140043561 5'GT 140043561 Upstream 29bp
chrX 24483633 24483633 1 + C T LUSC 24483631 + 24483611 24483651 41 CAAGCAGATCGAGCGCTACTCGCGCTTTTCGCCGTCGCCGC CAAGCAGATCGAGCGCTACTCGTGCTTTTCGCCGTCGCCGC < 41bp 0.751905089977326 0.519573735974652 0.24922484 0.2573735 prediction 0.464662708005347 Functional Loss - PDK3 ENSG00000067992 CDS Human protein_coding chrX:24483631 chrX:24483633 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_73496 0 0 1 0 1 PDK3 chrX:24483678 5'GT 24483678 Upstream 46bp
chrX 7267940 7267940 1 + T C UCEC 7267939 + 7267919 7267959 41 TAAACCACAGGCACATCCATCTGGAAGGCCTTTTTCTTCAC TAAACCACAGGCACATCCATCCGGAAGGCCTTTTTCTTCAC < 41bp 0.732329305097488 0.485667337122455 0.19156414 0.16438907 prediction 0.464658610194976 Functional Loss - STS ENSG00000101846 CDS Human protein_coding chrX:7267939 chrX:7267940 nonsynonymous SNV 0.941 5 22 hm5C_associated_SNPs_73497 0 0 0 0 1 STS chrX:7267929 3'AG 7267929 Downstream 12bp
chr20 47852933 47852933 1 + C T HNSC 47852931 + 47852911 47852951 41 CCACCGGGTGGGGCGAACAGCACGTGCTGGCAGGGCTGGGC CCACCGGGTGGGGCGAACAGCATGTGCTGGCAGGGCTGGGC < 41bp 0.825644323889888 0.593315738863667 0.3824783 0.31729636 prediction 0.464657170052441 Functional Loss - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47852931 chr20:47852933 nonsynonymous SNV 0.293 5 23 hm5C_associated_SNPs_73498 0 0 1 0 1 DDX27 chr20:47852870 3'AG 47852870 Downstream 64bp
chr19 1220485 1220485 1 + C T SKCM 1220483 + 1220463 1220503 41 ACCGGTGGCACCCTCAAAATCTCCGACCTGGGCGTGGCCGA ACCGGTGGCACCCTCAAAATCTTCGACCTGGGCGTGGCCGA < 41bp 0.821010489294992 0.588685617071388 0.21008378 0.06977081 prediction 0.464649744447208 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1220483 chr19:1220485 nonsynonymous SNV 0.978 4 23 hm5C_associated_SNPs_73500 0 0 1 0 1 STK11 chr19:1220504 5'GT 1220504 Upstream 20bp
chr10 99338147 99338147 1 + G A UCEC 99338144 + 99338124 99338164 41 CGCATGAGCCGCCCCCAGAGCCCGAGGAGATCGTAAGGGTC CGCATGAGCCGCCCCCAGAGCCCAAGGAGATCGTAAGGGTC < 41bp 0.782551234468511 0.550229086333341 0.42009935 0.1454781 prediction 0.46464429627034 Functional Loss - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99338144 chr10:99338147 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_73503 0 0 0 0 1 ANKRD2 chr10:99338155 5'GT 99338155 Upstream 9bp
chr1 87805280 87805280 1 + G A KIRC 87805277 + 87805257 87805297 41 AGTCGATTCCTGCGAGTGAACTCGTCATGAGGGCGCAAGGC AGTCGATTCCTGCGAGTGAACTCATCATGAGGGCGCAAGGC < 41bp 0.764046063734724 0.531725148721932 0.19480526 0.11110747 prediction 0.464641830025584 Functional Loss - LMO4 ENSG00000143013 CDS Human protein_coding chr1:87805277 chr1:87805280 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_73504 0 0 1 0 2 LMO4 chr1:87805219 3'AG 87805219 Downstream 62bp
chr1 87805280 87805280 1 + G A KIRC 87805277 + 87805257 87805297 41 AGTCGATTCCTGCGAGTGAACTCGTCATGAGGGCGCAAGGC AGTCGATTCCTGCGAGTGAACTCATCATGAGGGCGCAAGGC < 41bp 0.764046063734724 0.531725148721932 0.19480526 0.11110747 prediction 0.464641830025584 Functional Loss - LMO4 ENSG00000143013 CDS Human protein_coding chr1:87805277 chr1:87805280 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_73504 0 0 1 0 2 LMO4 chr1:87805315 5'GT 87805315 Upstream 36bp
chr19 11558330 11558330 1 + C T SKCM 11558328 + 11558308 11558348 41 GAGGAGCAGCCGCCAGTGCCCTCGTCGCCCACAGAGGAGGA GAGGAGCAGCCGCCAGTGCCCTTGTCGCCCACAGAGGAGGA < 41bp 0.732319711463968 0.467590371381691 0.053569198 0.056352526 prediction 0.464639422927936 Functional Loss - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11558328 chr19:11558330 nonsynonymous SNV 0.096 0 23 hm5C_associated_SNPs_73505 0 0 1 0 1 PRKCSH chr19:11558254 3'AG 11558254 Downstream 77bp
chr1 247586612 247586612 1 + G T LUSC 247586609 + 247586589 247586629 41 AAGAGGAGTGGATGGGTTTACTGGAGTACCTTTCGAGAATC AAGAGGAGTGGATGGGTTTACTGTAGTACCTTTCGAGAATC < 41bp 0.919156111484688 0.686839622794619 0.85894877 0.32797408 prediction 0.464632977380137 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247586609 chr1:247586612 stopgain 0.026 0 24 hm5C_associated_SNPs_73508 0 0 0 0 2 NLRP3 chr1:247586532 3'AG 247586532 Downstream 81bp
chr1 247586612 247586612 1 + G T LUSC 247586609 + 247586589 247586629 41 AAGAGGAGTGGATGGGTTTACTGGAGTACCTTTCGAGAATC AAGAGGAGTGGATGGGTTTACTGTAGTACCTTTCGAGAATC < 41bp 0.919156111484688 0.686839622794619 0.85894877 0.32797408 prediction 0.464632977380137 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247586609 chr1:247586612 stopgain 0.026 0 24 hm5C_associated_SNPs_73508 0 0 0 0 2 NLRP3 chr1:247586651 5'GT 247586651 Upstream 40bp
chr9 95841840 95841840 1 + C T rs374408066 95841838 + 95841818 95841858 41 GCCTCAAGCACTTCAACAAACCCGTGAGCGGGCCCAGCCAG GCCTCAAGCACTTCAACAAACCTGTGAGCGGGCCCAGCCAG < 41bp 0.732314829402368 0.46395090977048 0.08447811 0.10012907 prediction 0.464629658804736 Functional Loss - SUSD3 ENSG00000157303 CDS Human protein_coding chr9:95841838 chr9:95841840 synonymous SNV . 0 23 hm5C_associated_SNPs_73510 0 0 0 0 2 SUSD3 chr9:95841753 3'AG 95841753 Downstream 88bp
chr9 95841840 95841840 1 + C T rs374408066 95841838 + 95841818 95841858 41 GCCTCAAGCACTTCAACAAACCCGTGAGCGGGCCCAGCCAG GCCTCAAGCACTTCAACAAACCTGTGAGCGGGCCCAGCCAG < 41bp 0.732314829402368 0.46395090977048 0.08447811 0.10012907 prediction 0.464629658804736 Functional Loss - SUSD3 ENSG00000157303 CDS Human protein_coding chr9:95841838 chr9:95841840 synonymous SNV . 0 23 hm5C_associated_SNPs_73510 0 0 0 0 2 SUSD3 chr9:95841884 5'GT 95841884 Upstream 45bp
chr19 50957300 50957300 1 + G A SKCM 50957297 + 50957277 50957317 41 GTATTCACGACCACCGAGGGCAGGACCCGCATCGAGAAGCG GTATTCACGACCACCGAGGGCAGAACCCGCATCGAGAAGCG < 41bp 0.772117123829731 0.539803364665678 0.4054355 0.32115668 prediction 0.464627518328108 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957297 chr19:50957300 synonymous SNV . 0 24 hm5C_associated_SNPs_73512 0 0 0 0 1 MYBPC2 chr19:50957277 3'AG 50957277 Downstream 24bp
chr11 35198190 35198190 1 + C T SKCM 35198188 + 35198168 35198208 41 AAATGGTCGCTACAGCATCTCTCGGACGGAGGCCGCTGACC AAATGGTCGCTACAGCATCTCTTGGACGGAGGCCGCTGACC < 41bp 0.826954934481583 0.594641995741128 0.2165432 0.25103998 prediction 0.464625877480911 Functional Loss - CD44 ENSG00000026508 CDS Human protein_coding chr11:35198188 chr11:35198190 nonsynonymous SNV 0.937 3 23 hm5C_associated_SNPs_73513 0 0 1 0 2 CD44 chr11:35198122 3'AG 35198122 Downstream 69bp
chr11 35198190 35198190 1 + C T SKCM 35198188 + 35198168 35198208 41 AAATGGTCGCTACAGCATCTCTCGGACGGAGGCCGCTGACC AAATGGTCGCTACAGCATCTCTTGGACGGAGGCCGCTGACC < 41bp 0.826954934481583 0.594641995741128 0.2165432 0.25103998 prediction 0.464625877480911 Functional Loss - CD44 ENSG00000026508 CDS Human protein_coding chr11:35198188 chr11:35198190 nonsynonymous SNV 0.937 3 23 hm5C_associated_SNPs_73513 0 0 1 0 2 CD44 chr11:35198287 5'GT 35198287 Upstream 98bp
chr10 99359866 99359866 1 + G A SKCM 99359863 + 99359843 99359883 41 TTGTTCACAAGACCAGGAAGCAGGATTTTCAGGTGTTGGCT TTGTTCACAAGACCAGGAAGCAGAATTTTCAGGTGTTGGCT < 41bp 0.735612753879228 0.503300999235221 0.8891288 0.43062782 prediction 0.464623509288014 Functional Loss - HOGA1 ENSG00000241935 CDS Human protein_coding chr10:99359863 chr10:99359866 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_73515 0 0 0 0 2 HOGA1 chr10:99359824 3'AG 99359824 Downstream 43bp
chr10 99359866 99359866 1 + G A SKCM 99359863 + 99359843 99359883 41 TTGTTCACAAGACCAGGAAGCAGGATTTTCAGGTGTTGGCT TTGTTCACAAGACCAGGAAGCAGAATTTTCAGGTGTTGGCT < 41bp 0.735612753879228 0.503300999235221 0.8891288 0.43062782 prediction 0.464623509288014 Functional Loss - HOGA1 ENSG00000241935 CDS Human protein_coding chr10:99359863 chr10:99359866 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_73515 0 0 0 0 2 HOGA1 chr10:99359920 5'GT 99359920 Upstream 55bp
chr11 123485478 123485478 1 + G A UCEC 123485475 + 123485455 123485495 41 TCCACACAGACGCGGCATATCCCGGAGGACACCCCCAACGG TCCACACAGACGCGGCATATCCCAGAGGACACCCCCAACGG < 41bp 0.783855168567046 0.551546363718668 0.87438095 0.05069837 prediction 0.464617609696754 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123485475 chr11:123485478 synonymous SNV . 0 24 hm5C_associated_SNPs_73516 0 0 0 0 2 GRAMD1B chr11:123485453 3'AG 123485453 Downstream 26bp
chr11 123485478 123485478 1 + G A UCEC 123485475 + 123485455 123485495 41 TCCACACAGACGCGGCATATCCCGGAGGACACCCCCAACGG TCCACACAGACGCGGCATATCCCAGAGGACACCCCCAACGG < 41bp 0.783855168567046 0.551546363718668 0.87438095 0.05069837 prediction 0.464617609696754 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123485475 chr11:123485478 synonymous SNV . 0 24 hm5C_associated_SNPs_73516 0 0 0 0 2 GRAMD1B chr11:123485543 5'GT 123485543 Upstream 66bp
chr4 185940986 185940986 1 + G C SKCM 185940982 + 185940962 185941002 41 TGCACTCCGCTGATTTTCCCCGGGGAAGGGAAAAAGGTGGG TGCACTCCGCTGATTTTCCCCGGGCAAGGGAAAAAGGTGGG < 41bp 0.846309508815723 0.614000742521817 0.8771905 0.8015063 prediction 0.46461753258781 Functional Loss - HELT ENSG00000187821 CDS Human protein_coding chr4:185940982 chr4:185940986 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_73517 0 0 0 0 2 HELT chr4:185940901 3'AG 185940901 Downstream 86bp
chr4 185940986 185940986 1 + G C SKCM 185940982 + 185940962 185941002 41 TGCACTCCGCTGATTTTCCCCGGGGAAGGGAAAAAGGTGGG TGCACTCCGCTGATTTTCCCCGGGCAAGGGAAAAAGGTGGG < 41bp 0.846309508815723 0.614000742521817 0.8771905 0.8015063 prediction 0.46461753258781 Functional Loss - HELT ENSG00000187821 CDS Human protein_coding chr4:185940982 chr4:185940986 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_73517 0 0 0 0 2 HELT chr4:185940997 5'GT 185940997 Upstream 12bp
chr10 69647285 69647285 1 + C T UCEC 69647283 + 69647263 69647303 41 TAGTGACTGGACTCCAAGGCCACGGATAGGTATGGCTCAGA TAGTGACTGGACTCCAAGGCCATGGATAGGTATGGCTCAGA < 41bp 0.732306723757134 0.460619234768541 0.27004266 0.35563523 prediction 0.464613447514268 Functional Loss - SIRT1 ENSG00000096717 CDS Human protein_coding chr10:69647283 chr10:69647285 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_73518 0 0 1 0 1 SIRT1 chr10:69647291 5'GT 69647291 Upstream 7bp
chr11 55036772 55036772 1 + A C HNSC 55036771 + 55036751 55036791 41 TCTGAATCTAGCGCTCAGGGCAGGGCCCATCACTGGACTGA TCTGAATCTAGCGCTCAGGGCCGGGCCCATCACTGGACTGA < 41bp 0.803502634826966 0.571200464656303 0.41367978 0.3419798 prediction 0.464604340341324 Functional Loss - TRIM48 ENSG00000150244 CDS Human protein_coding chr11:55036771 chr11:55036772 synonymous SNV . 0 22 hm5C_associated_SNPs_73521 0 0 0 0 2 TRIM48 chr11:55036718 3'AG 55036718 Downstream 55bp
chr11 55036772 55036772 1 + A C HNSC 55036771 + 55036751 55036791 41 TCTGAATCTAGCGCTCAGGGCAGGGCCCATCACTGGACTGA TCTGAATCTAGCGCTCAGGGCCGGGCCCATCACTGGACTGA < 41bp 0.803502634826966 0.571200464656303 0.41367978 0.3419798 prediction 0.464604340341324 Functional Loss - TRIM48 ENSG00000150244 CDS Human protein_coding chr11:55036771 chr11:55036772 synonymous SNV . 0 22 hm5C_associated_SNPs_73521 0 0 0 0 2 TRIM48 chr11:55036815 5'GT 55036815 Upstream 44bp
chr9 126783560 126783560 1 + G T KIRC 126783558 + 126783538 126783578 41 GAAGCAGCTCGCGCAAAAGACGGGCCTCACCAAGCGGGTCC GAAGCAGCTCGCGCAAAAGACGTGCCTCACCAAGCGGGTCC < 41bp 0.732300358923708 0.376518947544913 0.8959595 0.3607646 prediction 0.464600717847416 Functional Loss - LHX2 ENSG00000106689 CDS Human protein_coding chr9:126783558 chr9:126783560 nonsynonymous SNV 0.995 5 23 hm5C_associated_SNPs_73522 0 0 0 0 1 LHX2 chr9:126783583 5'GT 126783583 Upstream 24bp
chr1 206153991 206153991 1 + G C CESC 206153987 + 206153967 206154007 41 CCTACTTTGGGGCAACTTGCCAGAGATAGAAGAGAGTACAG CCTACTTTGGGGCAACTTGCCAGACATAGAAGAGAGTACAG < 41bp 0.806595468824016 0.574304941771431 0.6502061 0.3233921 prediction 0.464581054105169 Functional Loss - FAM72A;FAM72C ENSG00000196550 CDS Human protein_coding chr1:206153987 chr1:206153991 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_73524 0 0 1 0 1 FAM72A;FAM72C chr1:206153957 3'AG 206153957 Downstream 35bp
chr4 186185686 186185686 1 + G A COAD 186185683 + 186185663 186185703 41 TACAAACGTGTTCTCGGGTTCTGGTGTTTTGTCTCCTCCCC TACAAACGTGTTCTCGGGTTCTGATGTTTTGTCTCCTCCCC < 41bp 0.739306371166343 0.50701826379834 0.25301844 0.14803302 prediction 0.464576214736004 Functional Loss - SNX25 ENSG00000109762 CDS Human protein_coding chr4:186185683 chr4:186185686 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_73526 0 0 0 0 2 SNX25 chr4:186185592 3'AG 186185592 Downstream 95bp
chr4 186185686 186185686 1 + G A COAD 186185683 + 186185663 186185703 41 TACAAACGTGTTCTCGGGTTCTGGTGTTTTGTCTCCTCCCC TACAAACGTGTTCTCGGGTTCTGATGTTTTGTCTCCTCCCC < 41bp 0.739306371166343 0.50701826379834 0.25301844 0.14803302 prediction 0.464576214736004 Functional Loss - SNX25 ENSG00000109762 CDS Human protein_coding chr4:186185683 chr4:186185686 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_73526 0 0 0 0 2 SNX25 chr4:186185764 5'GT 186185764 Upstream 79bp
chr1 53068137 53068137 1 + C T COAD 53068135 + 53068115 53068155 41 CTCCTGTGGGCTGCGGCCTGCGCGCAGCAGGAGCAGGACTT CTCCTGTGGGCTGCGGCCTGCGTGCAGCAGGAGCAGGACTT < 41bp 0.745937170293554 0.513649085945343 0.09623647 0.19809738 prediction 0.464576168696422 Functional Loss - GPX7 ENSG00000116157 CDS Human protein_coding chr1:53068135 chr1:53068137 nonsynonymous SNV 0.825 0 23 hm5C_associated_SNPs_73527 0 0 1 0 1 GPX7 chr1:53068219 5'GT 53068219 Upstream 83bp
chr7 158683965 158683965 1 + G A COAD 158683962 + 158683942 158683982 41 TCTCTCTCCATTAGCATGGCCACGAGGAAGGCTCTTCTGTG TCTCTCTCCATTAGCATGGCCACAAGGAAGGCTCTTCTGTG < 41bp 0.745535193718708 0.513253442541383 0.43849915 0.15974584 prediction 0.464563502354648 Functional Loss - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158683962 chr7:158683965 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_73529 0 0 1 0 2 WDR60 chr7:158683956 3'AG 158683956 Downstream 10bp
chr7 158683965 158683965 1 + G A COAD 158683962 + 158683942 158683982 41 TCTCTCTCCATTAGCATGGCCACGAGGAAGGCTCTTCTGTG TCTCTCTCCATTAGCATGGCCACAAGGAAGGCTCTTCTGTG < 41bp 0.745535193718708 0.513253442541383 0.43849915 0.15974584 prediction 0.464563502354648 Functional Loss - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158683962 chr7:158683965 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_73529 0 0 1 0 2 WDR60 chr7:158684024 5'GT 158684024 Upstream 60bp
chr10 124045630 124045630 1 + C T rs116148135 124045628 + 124045608 124045648 41 TTCTGTCCTCAGATGTGATTCTCGAGTGCCTGGGCTTCAAA TTCTGTCCTCAGATGTGATTCTTGAGTGCCTGGGCTTCAAA < 41bp 0.836205750342532 0.603929996210748 0.7069692 0.18022037 prediction 0.464551508263568 Functional Loss - BTBD16 ENSG00000138152 CDS Human protein_coding chr10:124045628 chr10:124045630 synonymous SNV . 0 23 hm5C_associated_SNPs_73533 0 0 0 0 1 BTBD16 chr10:124045620 3'AG 124045620 Downstream 11bp
chr5 130506723 130506723 1 + G A UCEC 130506720 + 130506700 130506740 41 CGGTGAGGAGAGCCATGGGACGGGCAGTCAAGGTGACAGGG CGGTGAGGAGAGCCATGGGACGGACAGTCAAGGTGACAGGG < 41bp 0.760411832970188 0.528142263984385 0.3919364 0.21009529 prediction 0.464539137971606 Functional Loss - LYRM7 ENSG00000186687 CDS Human protein_coding chr5:130506720 chr5:130506723 nonsynonymous SNV 0.097 0 24 hm5C_associated_SNPs_73535 0 0 1 0 1 LYRM7 chr5:130506731 5'GT 130506731 Upstream 9bp
chr1 43130609 43130609 1 + C T SKCM 43130607 + 43130587 43130627 41 TTTTAAACTTAGACACTCAGCTCCAGGCCTGCTTTCCATGG TTTTAAACTTAGACACTCAGCTTCAGGCCTGCTTTCCATGG < 41bp 0.851482031147495 0.619219387451002 0.7113912 0.047667503 prediction 0.464525287392985 Functional Loss - PPIH ENSG00000171960 CDS Human protein_coding chr1:43130607 chr1:43130609 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_73539 0 0 1 0 2 PPIH chr1:43130534 3'AG 43130534 Downstream 76bp
chr1 43130609 43130609 1 + C T SKCM 43130607 + 43130587 43130627 41 TTTTAAACTTAGACACTCAGCTCCAGGCCTGCTTTCCATGG TTTTAAACTTAGACACTCAGCTTCAGGCCTGCTTTCCATGG < 41bp 0.851482031147495 0.619219387451002 0.7113912 0.047667503 prediction 0.464525287392985 Functional Loss - PPIH ENSG00000171960 CDS Human protein_coding chr1:43130607 chr1:43130609 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_73539 0 0 1 0 2 PPIH chr1:43130626 5'GT 43130626 Upstream 18bp
chr20 57598602 57598602 1 + G T GBM 57598600 + 57598580 57598620 41 CTAGAACCTGGGACGATGGACAGCATTCGATCTAGCAAATT CTAGAACCTGGGACGATGGACATCATTCGATCTAGCAAATT < 41bp 0.732261818193266 0.38565364868768 0.23537257 0.12536493 prediction 0.464523636386532 Functional Loss - TUBB1 ENSG00000101162 CDS Human protein_coding chr20:57598600 chr20:57598602 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_73540 0 0 1 0 2 TUBB1 chr20:57598545 3'AG 57598545 Downstream 58bp
chr20 57598602 57598602 1 + G T GBM 57598600 + 57598580 57598620 41 CTAGAACCTGGGACGATGGACAGCATTCGATCTAGCAAATT CTAGAACCTGGGACGATGGACATCATTCGATCTAGCAAATT < 41bp 0.732261818193266 0.38565364868768 0.23537257 0.12536493 prediction 0.464523636386532 Functional Loss - TUBB1 ENSG00000101162 CDS Human protein_coding chr20:57598600 chr20:57598602 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_73540 0 0 1 0 2 TUBB1 chr20:57598655 5'GT 57598655 Upstream 54bp
chr19 8121051 8121051 1 + G T SARC 8121049 + 8121029 8121069 41 GTTGCAGGTGTCTTTGAGGACTGCTGCCTGGCCTACCACTA GTTGCAGGTGTCTTTGAGGACTTCTGCCTGGCCTACCACTA < 41bp 0.732239836616746 0.379654016997699 0.18320408 0.1256488 prediction 0.464479673233492 Functional Loss - CCL25 ENSG00000131142 CDS Human protein_coding chr19:8121049 chr19:8121051 nonsynonymous SNV 0.642 4 23 hm5C_associated_SNPs_73544 0 0 0 0 1 CCL25 chr19:8121036 3'AG 8121036 Downstream 16bp
chr9 136313805 136313805 1 + T C LUAD 136313804 + 136313784 136313824 41 GTGTGGCCTGGCAAGCAAGCCTGGGAGCCGGCGGGAGGTCT GTGTGGCCTGGCAAGCAAGCCCGGGAGCCGGCGGGAGGTCT < 41bp 0.734633553088274 0.502406237967744 0.85963714 0.8757756 prediction 0.46445463024106 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136313804 chr9:136313805 synonymous SNV . 0 22 hm5C_associated_SNPs_73549 0 0 0 0 2 ADAMTS13 chr9:136313720 3'AG 136313720 Downstream 86bp
chr9 136313805 136313805 1 + T C LUAD 136313804 + 136313784 136313824 41 GTGTGGCCTGGCAAGCAAGCCTGGGAGCCGGCGGGAGGTCT GTGTGGCCTGGCAAGCAAGCCCGGGAGCCGGCGGGAGGTCT < 41bp 0.734633553088274 0.502406237967744 0.85963714 0.8757756 prediction 0.46445463024106 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136313804 chr9:136313805 synonymous SNV . 0 22 hm5C_associated_SNPs_73549 0 0 0 0 2 ADAMTS13 chr9:136313849 5'GT 136313849 Upstream 45bp
chr1 156130754 156130754 1 + G T ESCA 156130751 + 156130731 156130771 41 CAGGTCGTCTACTTCTTCTTCGAGGAGACAGCCAGCGAGTT CAGGTCGTCTACTTCTTCTTCGATGAGACAGCCAGCGAGTT < 41bp 0.732226210472152 0.322501770977486 0.8525383 0.14167741 prediction 0.464452420944305 Functional Loss - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156130751 chr1:156130754 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_73550 0 0 0 0 2 SEMA4A chr1:156130696 3'AG 156130696 Downstream 59bp
chr1 156130754 156130754 1 + G T ESCA 156130751 + 156130731 156130771 41 CAGGTCGTCTACTTCTTCTTCGAGGAGACAGCCAGCGAGTT CAGGTCGTCTACTTCTTCTTCGATGAGACAGCCAGCGAGTT < 41bp 0.732226210472152 0.322501770977486 0.8525383 0.14167741 prediction 0.464452420944305 Functional Loss - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156130751 chr1:156130754 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_73550 0 0 0 0 2 SEMA4A chr1:156130820 5'GT 156130820 Upstream 67bp
chr4 20618601 20618601 1 + G T LUAD 20618598 + 20618578 20618618 41 GGCAGAACGGAACCAGCTTCCACGGCTGCATCCGGAACCTT GGCAGAACGGAACCAGCTTCCACTGCTGCATCCGGAACCTT < 41bp 0.732222870363212 0.358922075506529 0.48793042 0.2695248 prediction 0.464445740726424 Functional Loss - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20618598 chr4:20618601 nonsynonymous SNV 0.990 5 24 hm5C_associated_SNPs_73554 0 0 1 0 1 SLIT2 chr4:20618533 3'AG 20618533 Downstream 69bp
chr4 20618600 20618600 1 + C T UCEC 20618598 + 20618578 20618618 41 GGCAGAACGGAACCAGCTTCCACGGCTGCATCCGGAACCTT GGCAGAACGGAACCAGCTTCCATGGCTGCATCCGGAACCTT < 41bp 0.732222870363212 0.463223451600062 0.48793042 0.37979242 prediction 0.464445740726424 Functional Loss - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20618598 chr4:20618600 synonymous SNV . 0 23 hm5C_associated_SNPs_73555 0 0 1 0 1 SLIT2 chr4:20618533 3'AG 20618533 Downstream 68bp
chr7 128490875 128490875 1 + C T UCEC 128490873 + 128490853 128490893 41 GCAGGAGAGGTGCGGATGCCCTCGGGGAAGACGGCACGGCC GCAGGAGAGGTGCGGATGCCCTTGGGGAAGACGGCACGGCC < 41bp 0.788563245542199 0.556340616382033 0.15870714 0.1458044 prediction 0.464445258320331 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128490873 chr7:128490875 nonsynonymous SNV 0.931 5 23 hm5C_associated_SNPs_73556 0 0 1 0 1 FLNC chr7:128490857 3'AG 128490857 Downstream 19bp
chr14 58666950 58666950 1 + G T UCEC 58666947 + 58666927 58666967 41 CTTACTACCATGCCGCTCTACGAGGGCCTGGGGAGCGGCGG CTTACTACCATGCCGCTCTACGATGGCCTGGGGAGCGGCGG < 41bp 0.919747061107058 0.687527450471844 0.4202221 0.29561782 prediction 0.464439221270429 Functional Loss - ACTR10 ENSG00000131966 CDS Human protein_coding chr14:58666947 chr14:58666950 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_73557 0 0 1 0 1 ACTR10 chr14:58667012 5'GT 58667012 Upstream 63bp
chr17 4352608 4352608 1 + G A STAD 4352605 + 4352585 4352625 41 GCCCTGGGGTTCTGGGCCCCCAAGTTTCTGCTCGAGGCACG GCCCTGGGGTTCTGGGCCCCCAAATTTCTGCTCGAGGCACG < 41bp 0.773771730598679 0.541553763509464 0.37037343 0.79312265 prediction 0.464435934178431 Functional Loss - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4352605 chr17:4352608 synonymous SNV . 0 24 hm5C_associated_SNPs_73558 0 0 0 0 2 SPNS3 chr17:4352530 3'AG 4352530 Downstream 79bp
chr17 4352608 4352608 1 + G A STAD 4352605 + 4352585 4352625 41 GCCCTGGGGTTCTGGGCCCCCAAGTTTCTGCTCGAGGCACG GCCCTGGGGTTCTGGGCCCCCAAATTTCTGCTCGAGGCACG < 41bp 0.773771730598679 0.541553763509464 0.37037343 0.79312265 prediction 0.464435934178431 Functional Loss - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4352605 chr17:4352608 synonymous SNV . 0 24 hm5C_associated_SNPs_73558 0 0 0 0 2 SPNS3 chr17:4352682 5'GT 4352682 Upstream 75bp
chr19 37961245 37961245 1 + G T CESC 37961242 + 37961222 37961262 41 CTATTTCCCAAGAGAAGAGCCAGGAGGAAGAAAGAATGGCT CTATTTCCCAAGAGAAGAGCCAGTAGGAAGAAAGAATGGCT < 41bp 0.732211429048494 0.463989630600795 0.65592635 0.40351298 prediction 0.464422858096988 Functional Loss - ZNF570 ENSG00000171827 CDS Human protein_coding chr19:37961242 chr19:37961245 stopgain 0.673 0 24 hm5C_associated_SNPs_73560 0 0 0 0 2 ZNF570 chr19:37961206 3'AG 37961206 Downstream 40bp
chr19 37961245 37961245 1 + G T CESC 37961242 + 37961222 37961262 41 CTATTTCCCAAGAGAAGAGCCAGGAGGAAGAAAGAATGGCT CTATTTCCCAAGAGAAGAGCCAGTAGGAAGAAAGAATGGCT < 41bp 0.732211429048494 0.463989630600795 0.65592635 0.40351298 prediction 0.464422858096988 Functional Loss - ZNF570 ENSG00000171827 CDS Human protein_coding chr19:37961242 chr19:37961245 stopgain 0.673 0 24 hm5C_associated_SNPs_73560 0 0 0 0 2 ZNF570 chr19:37961289 5'GT 37961289 Upstream 45bp
chr11 124745965 124745965 1 + C T LUSC 124745963 + 124745943 124745983 41 CTCCTCTATCGAACCCTGGTCGCGGCGGCCACCAGCGCAGG CTCCTCTATCGAACCCTGGTCGTGGCGGCCACCAGCGCAGG < 41bp 0.765488680129145 0.533278346770662 0.42154878 0.20385987 prediction 0.464420666716967 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124745963 chr11:124745965 nonsynonymous SNV 0.121 3 23 hm5C_associated_SNPs_73561 0 0 0 0 1 ROBO3 chr11:124746021 5'GT 124746021 Upstream 57bp
chr8 97285557 97285557 1 + G T BRCA 97285554 + 97285534 97285574 41 TCTGTTCCAGAAGACAACATCTGGAGAGGCATCCTCTCTGT TCTGTTCCAGAAGACAACATCTGTAGAGGCATCCTCTCTGT < 41bp 0.922593206236844 0.690384939886003 0.8456697 0.38610494 prediction 0.464416532701682 Functional Loss - PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97285554 chr8:97285557 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_73563 0 0 1 0 2 PTDSS1 chr8:97285527 3'AG 97285527 Downstream 31bp
chr8 97285557 97285557 1 + G T BRCA 97285554 + 97285534 97285574 41 TCTGTTCCAGAAGACAACATCTGGAGAGGCATCCTCTCTGT TCTGTTCCAGAAGACAACATCTGTAGAGGCATCCTCTCTGT < 41bp 0.922593206236844 0.690384939886003 0.8456697 0.38610494 prediction 0.464416532701682 Functional Loss - PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97285554 chr8:97285557 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_73563 0 0 1 0 2 PTDSS1 chr8:97285618 5'GT 97285618 Upstream 62bp
chr3 197025871 197025871 1 + A C rs573286747 197025867 + 197025847 197025887 41 AGCCTGCGTCCCCGCCCGGTCAGCATCGCAGGTGTTACCCA AGCCTGCGTCCCCGCCCGGTCAGCCTCGCAGGTGTTACCCA < 41bp 0.732199446993808 0.32642456361857 0.059569985 0.08559859 prediction 0.464398893987617 Functional Loss - DLG1-AS1 ENSG00000227375 ncRNA_exonic Human antisense chr3:197025867 chr3:197025871 . . 0 25 hm5C_associated_SNPs_73568 0 0 0 0 2 DLG1-AS1 chr3:197025849 3'AG 197025849 Downstream 23bp
chr3 197025871 197025871 1 + A C rs573286747 197025867 + 197025847 197025887 41 AGCCTGCGTCCCCGCCCGGTCAGCATCGCAGGTGTTACCCA AGCCTGCGTCCCCGCCCGGTCAGCCTCGCAGGTGTTACCCA < 41bp 0.732199446993808 0.32642456361857 0.059569985 0.08559859 prediction 0.464398893987617 Functional Loss - DLG1-AS1 ENSG00000227375 ncRNA_exonic Human antisense chr3:197025867 chr3:197025871 . . 0 25 hm5C_associated_SNPs_73568 0 0 0 0 2 DLG1-AS1 chr3:197025963 5'GT 197025963 Upstream 93bp
chr19 580461 580461 1 + G A LUSC 580458 + 580438 580478 41 GCACGGCCAACATCCAGCTCCACGGTGAGTCCTGCAGCCAG GCACGGCCAACATCCAGCTCCACAGTGAGTCCTGCAGCCAG < 41bp 0.754623382199839 0.522427126420357 0.2737549 0.20826706 prediction 0.464392511558964 Functional Loss - BSG ENSG00000172270 CDS Human protein_coding chr19:580458 chr19:580461 nonsynonymous SNV 0.007 3 24 hm5C_associated_SNPs_73569 0 0 1 2 1 BSG chr19:580461 5'GT 580461 Upstream 1bp
chr7 73634311 73634311 1 + G T UCEC 73634308 + 73634288 73634328 41 AGTGGTCGGGCAGGCATGGCCAGGACCCCTGGCGGACATGG AGTGGTCGGGCAGGCATGGCCAGTACCCCTGGCGGACATGG < 41bp 0.93172852551083 0.699534452522844 0.9000355 0.2174578 prediction 0.464388145975974 Functional Loss - LAT2 ENSG00000086730 CDS Human protein_coding chr7:73634308 chr7:73634311 nonsynonymous SNV 0.033 3 24 hm5C_associated_SNPs_73571 0 0 1 0 2 LAT2 chr7:73634290 3'AG 73634290 Downstream 22bp
chr7 73634311 73634311 1 + G T UCEC 73634308 + 73634288 73634328 41 AGTGGTCGGGCAGGCATGGCCAGGACCCCTGGCGGACATGG AGTGGTCGGGCAGGCATGGCCAGTACCCCTGGCGGACATGG < 41bp 0.93172852551083 0.699534452522844 0.9000355 0.2174578 prediction 0.464388145975974 Functional Loss - LAT2 ENSG00000086730 CDS Human protein_coding chr7:73634308 chr7:73634311 nonsynonymous SNV 0.033 3 24 hm5C_associated_SNPs_73571 0 0 1 0 2 LAT2 chr7:73634338 5'GT 73634338 Upstream 28bp
chr11 4150363 4150363 1 + C T STAD 4150361 + 4150341 4150381 41 ACCTATGGGACTGGAAGGTTCTCAAGGAGAAGATTGCAAAG ACCTATGGGACTGGAAGGTTCTTAAGGAGAAGATTGCAAAG < 41bp 0.732193481072085 0.4378379053988 0.226071 0.226971 prediction 0.46438696214417 Functional Loss - RRM1 ENSG00000167325 CDS Human protein_coding chr11:4150361 chr11:4150363 synonymous SNV . 0 23 hm5C_associated_SNPs_73572 0 0 1 0 2 RRM1 chr11:4150304 3'AG 4150304 Downstream 60bp
chr11 4150363 4150363 1 + C T STAD 4150361 + 4150341 4150381 41 ACCTATGGGACTGGAAGGTTCTCAAGGAGAAGATTGCAAAG ACCTATGGGACTGGAAGGTTCTTAAGGAGAAGATTGCAAAG < 41bp 0.732193481072085 0.4378379053988 0.226071 0.226971 prediction 0.46438696214417 Functional Loss - RRM1 ENSG00000167325 CDS Human protein_coding chr11:4150361 chr11:4150363 synonymous SNV . 0 23 hm5C_associated_SNPs_73572 0 0 1 0 2 RRM1 chr11:4150380 5'GT 4150380 Upstream 18bp
chr12 121003283 121003283 1 + C T COAD 121003281 + 121003261 121003301 41 AAAAGAAGGCTCGGGAGGAACGCCGCCGAGAGCGCAGGATT AAAAGAAGGCTCGGGAGGAACGTCGCCGAGAGCGCAGGATT < 41bp 0.732192506660337 0.443294763966255 0.24988729 0.22443801 prediction 0.464385013320673 Functional Loss - RNF10 ENSG00000022840 CDS Human protein_coding chr12:121003281 chr12:121003283 synonymous SNV . 0 23 hm5C_associated_SNPs_73574 0 0 1 0 1 RNF10 chr12:121003231 3'AG 121003231 Downstream 53bp
chr5 38431313 38431313 1 + G A COAD 38431310 + 38431290 38431330 41 CCCTCACCCTGGGCAACTGGCACGAGCTTCGTGTATCTCGC CCCTCACCCTGGGCAACTGGCACAAGCTTCGTGTATCTCGC < 41bp 0.757590162891863 0.525406815849459 0.14783537 0.066722274 prediction 0.464366694084808 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38431310 chr5:38431313 nonsynonymous SNV 0.795 1 24 hm5C_associated_SNPs_73579 0 0 0 0 2 EGFLAM chr5:38431279 3'AG 38431279 Downstream 35bp
chr5 38431313 38431313 1 + G A COAD 38431310 + 38431290 38431330 41 CCCTCACCCTGGGCAACTGGCACGAGCTTCGTGTATCTCGC CCCTCACCCTGGGCAACTGGCACAAGCTTCGTGTATCTCGC < 41bp 0.757590162891863 0.525406815849459 0.14783537 0.066722274 prediction 0.464366694084808 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38431310 chr5:38431313 nonsynonymous SNV 0.795 1 24 hm5C_associated_SNPs_73579 0 0 0 0 2 EGFLAM chr5:38431390 5'GT 38431390 Upstream 78bp
chr12 50480065 50480065 1 + G T LUAD 50480063 + 50480043 50480083 41 CAGTCAGGGATGGATCAGTCCCGCAAGAGACCTGCCCCTCA CAGTCAGGGATGGATCAGTCCCTCAAGAGACCTGCCCCTCA < 41bp 0.732182014961298 0.382552165217357 0.19919708 0.10447642 prediction 0.464364029922596 Functional Loss - SMARCD1 ENSG00000066117 CDS Human protein_coding chr12:50480063 chr12:50480065 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_73580 0 0 1 0 1 SMARCD1 chr12:50480131 5'GT 50480131 Upstream 67bp
chr3 14170970 14170970 1 + G T SARC 14170967 + 14170947 14170987 41 AGTTAAAACCAGCTCCCAGCCAGGCTTCCTGGAACGGCTGA AGTTAAAACCAGCTCCCAGCCAGTCTTCCTGGAACGGCTGA < 41bp 0.732181572395214 0.324834881505823 0.5793201 0.10195136 prediction 0.464363144790428 Functional Loss - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14170967 chr3:14170970 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_73581 0 0 1 0 2 TMEM43 chr3:14170912 3'AG 14170912 Downstream 59bp
chr3 14170970 14170970 1 + G T SARC 14170967 + 14170947 14170987 41 AGTTAAAACCAGCTCCCAGCCAGGCTTCCTGGAACGGCTGA AGTTAAAACCAGCTCCCAGCCAGTCTTCCTGGAACGGCTGA < 41bp 0.732181572395214 0.324834881505823 0.5793201 0.10195136 prediction 0.464363144790428 Functional Loss - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14170967 chr3:14170970 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_73581 0 0 1 0 2 TMEM43 chr3:14171061 5'GT 14171061 Upstream 92bp
chr19 45973945 45973945 1 + C T OV 45973943 + 45973923 45973963 41 GTGCCCACGGTCACCGCGATCACAACCAGCCAGGACCTCCA GTGCCCACGGTCACCGCGATCATAACCAGCCAGGACCTCCA < 41bp 0.732177612512268 0.462038244694183 0.06105867 0.06419602 prediction 0.464355225024537 Functional Loss - FOSB ENSG00000125740 CDS Human protein_coding chr19:45973943 chr19:45973945 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_73583 0 0 0 0 1 FOSB chr19:45973887 3'AG 45973887 Downstream 59bp
chr15 85478710 85478710 1 + G C HNSC 85478706 + 85478686 85478726 41 GTACAAGCAACGCCGCCTGGCAGGGGCCGAGGAGTGGGTCG GTACAAGCAACGCCGCCTGGCAGGCGCCGAGGAGTGGGTCG < 41bp 0.860185639749447 0.628009936534325 0.91047376 0.45739868 prediction 0.464351406430243 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85478706 chr15:85478710 synonymous SNV . 0 25 hm5C_associated_SNPs_73585 0 0 0 0 1 SLC28A1 chr15:85478749 5'GT 85478749 Upstream 40bp
chr7 106508082 106508082 1 + C T COAD 106508080 + 106508060 106508100 41 AAGGCGCCGGAGGATGAAGCCGCGCAGTGCTGCGGCCAGCC AAGGCGCCGGAGGATGAAGCCGTGCAGTGCTGCGGCCAGCC < 41bp 0.73216418273604 0.460207208416515 0.61466014 0.40284282 prediction 0.464328365472079 Functional Loss - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106508080 chr7:106508082 nonsynonymous SNV 0.740 0 23 hm5C_associated_SNPs_73590 0 0 0 0 1 PIK3CG chr7:106507995 3'AG 106507995 Downstream 88bp
chr11 6630568 6630568 1 + G A HNSC 6630565 + 6630545 6630585 41 TGGCAGGGCAATGACATTGTCGTGAAGGTGCTGAAGGTTCG TGGCAGGGCAATGACATTGTCGTAAAGGTGCTGAAGGTTCG < 41bp 0.732161202136776 0.498789934553989 0.22430375 0.1237824 prediction 0.464322404273552 Functional Loss - ILK ENSG00000166333 CDS Human protein_coding chr11:6630565 chr11:6630568 synonymous SNV . 0 24 hm5C_associated_SNPs_73591 0 0 1 0 2 ILK chr11:6630530 3'AG 6630530 Downstream 39bp
chr11 6630568 6630568 1 + G A HNSC 6630565 + 6630545 6630585 41 TGGCAGGGCAATGACATTGTCGTGAAGGTGCTGAAGGTTCG TGGCAGGGCAATGACATTGTCGTAAAGGTGCTGAAGGTTCG < 41bp 0.732161202136776 0.498789934553989 0.22430375 0.1237824 prediction 0.464322404273552 Functional Loss - ILK ENSG00000166333 CDS Human protein_coding chr11:6630565 chr11:6630568 synonymous SNV . 0 24 hm5C_associated_SNPs_73591 0 0 1 0 2 ILK chr11:6630639 5'GT 6630639 Upstream 72bp
chr11 124007759 124007759 1 + C T SKCM 124007756 + 124007736 124007776 41 GCCTTGCTGCCAAGTCCTTGCTCCAGACCAAGGACATGGGC GCCTTGCTGCCAAGTCCTTGCTCTAGACCAAGGACATGGGC < 41bp 0.734249772357336 0.502089526161711 0.52654517 0.31167877 prediction 0.46432049239125 Functional Loss - VWA5A ENSG00000110002 CDS Human protein_coding chr11:124007756 chr11:124007759 stopgain 0.828 1 24 hm5C_associated_SNPs_73593 0 0 0 0 1 VWA5A chr11:124007722 3'AG 124007722 Downstream 38bp
chr1 46976311 46976311 1 + T C UCEC 46976310 + 46976290 46976330 41 GGCCATGTGCACCAACCTGCCTGAGGCCCGGGTGCAGGTAG GGCCATGTGCACCAACCTGCCCGAGGCCCGGGTGCAGGTAG < 41bp 0.747196784527674 0.515038418769854 0.18931016 0.28339577 prediction 0.46431673151564 Functional Loss - DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46976310 chr1:46976311 synonymous SNV . 0 22 hm5C_associated_SNPs_73594 0 0 0 0 1 DMBX1 chr1:46976326 5'GT 46976326 Upstream 16bp
chr6 35199555 35199555 1 + A C SKCM 35199554 + 35199534 35199574 41 TGTCAGCAGAGCTGTGTCAACATGATGGGCAGCTATGAGTG TGTCAGCAGAGCTGTGTCAACCTGATGGGCAGCTATGAGTG < 41bp 0.813227991626363 0.581071300342644 0.2811041 0.18124408 prediction 0.464313382567437 Functional Loss - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35199554 chr6:35199555 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_73595 0 0 0 0 2 SCUBE3 chr6:35199502 3'AG 35199502 Downstream 54bp
chr6 35199555 35199555 1 + A C SKCM 35199554 + 35199534 35199574 41 TGTCAGCAGAGCTGTGTCAACATGATGGGCAGCTATGAGTG TGTCAGCAGAGCTGTGTCAACCTGATGGGCAGCTATGAGTG < 41bp 0.813227991626363 0.581071300342644 0.2811041 0.18124408 prediction 0.464313382567437 Functional Loss - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35199554 chr6:35199555 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_73595 0 0 0 0 2 SCUBE3 chr6:35199636 5'GT 35199636 Upstream 82bp
chr12 111785402 111785402 1 + G A HNSC 111785399 + 111785379 111785419 41 CCTTGATCCAAGCGGGGGTCCTGGAATCCTACCGCCAGGCC CCTTGATCCAAGCGGGGGTCCTGAAATCCTACCGCCAGGCC < 41bp 0.732155919126209 0.499927617970797 0.87808883 0.4400015 prediction 0.464311838252418 Functional Loss - CUX2 ENSG00000111249 CDS Human protein_coding chr12:111785399 chr12:111785402 nonsynonymous SNV 0.038 1 24 hm5C_associated_SNPs_73598 0 0 0 0 1 CUX2 chr12:111785328 3'AG 111785328 Downstream 75bp
chr1 246784911 246784911 1 + G A SKCM 246784908 + 246784888 246784928 41 TGAAGTTGAGCAGTTGGATTCAAGAGCACTTCCCCTTTGCC TGAAGTTGAGCAGTTGGATTCAAAAGCACTTCCCCTTTGCC < 41bp 0.775605382174534 0.543449988817753 0.8753214 0.24082017 prediction 0.464310786713562 Functional Loss - CNST ENSG00000162852 CDS Human protein_coding chr1:246784908 chr1:246784911 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_73600 0 0 1 0 1 CNST chr1:246784936 5'GT 246784936 Upstream 26bp
chr14 77703063 77703063 1 + G A SKCM 77703060 + 77703040 77703080 41 CACTGCCTGGGGTTTGCACCCAGGAATAGCCAAAAGGTAAG CACTGCCTGGGGTTTGCACCCAGAAATAGCCAAAAGGTAAG < 41bp 0.745327917664884 0.51317634847748 0.7747966 0.3500714 prediction 0.464303138374807 Functional Loss - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77703060 chr14:77703063 synonymous SNV . 0 24 hm5C_associated_SNPs_73601 0 0 0 0 2 TMEM63C chr14:77702967 3'AG 77702967 Downstream 97bp
chr14 77703063 77703063 1 + G A SKCM 77703060 + 77703040 77703080 41 CACTGCCTGGGGTTTGCACCCAGGAATAGCCAAAAGGTAAG CACTGCCTGGGGTTTGCACCCAGAAATAGCCAAAAGGTAAG < 41bp 0.745327917664884 0.51317634847748 0.7747966 0.3500714 prediction 0.464303138374807 Functional Loss - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77703060 chr14:77703063 synonymous SNV . 0 24 hm5C_associated_SNPs_73601 0 0 0 0 2 TMEM63C chr14:77703075 5'GT 77703075 Upstream 13bp
chr7 89854409 89854409 1 + T C COAD 89854408 + 89854388 89854428 41 GTCCGTATCATGGAATCAATCTCTATGATGGGAAGCCCTAA GTCCGTATCATGGAATCAATCCCTATGATGGGAAGCCCTAA < 41bp 0.73215065378146 0.475371796065373 0.8284961 0.12354615 prediction 0.464301307562919 Functional Loss - STEAP2 ENSG00000157214 CDS Human protein_coding chr7:89854408 chr7:89854409 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_73602 0 0 0 0 1 STEAP2 chr7:89854364 3'AG 89854364 Downstream 46bp
chr20 25260915 25260915 1 + C T ESCA 25260913 + 25260893 25260933 41 ATGGCCTAGGCCTGGGAAATCACGAAGAAGACCTGTGCATA ATGGCCTAGGCCTGGGAAATCATGAAGAAGACCTGTGCATA < 41bp 0.843942176339062 0.611797590290768 0.7852184 0.24169853 prediction 0.464289172096589 Functional Loss - PYGB ENSG00000100994 CDS Human protein_coding chr20:25260913 chr20:25260915 nonsynonymous SNV 0.980 5 23 hm5C_associated_SNPs_73607 0 0 0 0 1 PYGB chr20:25260902 3'AG 25260902 Downstream 14bp
chr19 56539800 56539800 1 + G C LUAD 56539799 + 56539779 56539819 41 TCCAGCACTGTCCGTATTTGCGGAAAATTCGGGTGGATGTC TCCAGCACTGTCCGTATTTGCCGAAAATTCGGGTGGATGTC < 41bp 0.732142455260381 0.412601961916161 0.9182502 0.233843 prediction 0.464284910520761 Functional Loss - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56539799 chr19:56539800 nonsynonymous SNV 0.002 3 22 hm5C_associated_SNPs_73608 0 0 0 0 1 NLRP5 chr19:56539875 5'GT 56539875 Upstream 76bp
chr19 50905762 50905762 1 + T C rs1143666 50905761 + 50905741 50905781 41 CAACTGGCTGGAGCTCCCAGCTGGGAAATACGCCCTGAGGC CAACTGGCTGGAGCTCCCAGCCGGGAAATACGCCCTGAGGC < 41bp 0.759051786880916 0.526910961033576 0.41736573 0.7891063 prediction 0.464281651694681 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905761 chr19:50905762 synonymous SNV . 0 22 hm5C_associated_SNPs_73609 1 0 1 0 2 POLD1 chr19:50905711 3'AG 50905711 Downstream 52bp
chr19 50905762 50905762 1 + T C rs1143666 50905761 + 50905741 50905781 41 CAACTGGCTGGAGCTCCCAGCTGGGAAATACGCCCTGAGGC CAACTGGCTGGAGCTCCCAGCCGGGAAATACGCCCTGAGGC < 41bp 0.759051786880916 0.526910961033576 0.41736573 0.7891063 prediction 0.464281651694681 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905761 chr19:50905762 synonymous SNV . 0 22 hm5C_associated_SNPs_73609 1 0 1 0 2 POLD1 chr19:50905792 5'GT 50905792 Upstream 31bp
chr15 27572157 27572157 1 + A T HNSC 27572153 + 27572133 27572173 41 CTCCTCCGGATTTGGAATGACGGGAAAATCCTTTACACTTT CTCCTCCGGATTTGGAATGACGGGTAAATCCTTTACACTTT < 41bp 0.859707398772814 0.627569785423152 0.20089722 0.39963895 prediction 0.464275226699323 Functional Loss - GABRG3 ENSG00000182256 CDS Human protein_coding chr15:27572153 chr15:27572157 stopgain 0.984 1 25 hm5C_associated_SNPs_73613 0 0 0 0 1 GABRG3 chr15:27572176 5'GT 27572176 Upstream 20bp
chr5 80419585 80419585 1 + A C rs143742782 80419581 + 80419561 80419601 41 GCACCTCCGCTATCGACAGCCTGGAGGTAAGAGCTCAAGAG GCACCTCCGCTATCGACAGCCTGGCGGTAAGAGCTCAAGAG < 41bp 0.732130459418108 0.328128426067919 0.39435554 0.1909652 prediction 0.464260918836217 Functional Loss - RASGRF2 ENSG00000113319 CDS Human protein_coding chr5:80419581 chr5:80419585 synonymous SNV . 0 25 hm5C_associated_SNPs_73616 0 0 1 0 1 RASGRF2 chr5:80419586 5'GT 80419586 Upstream 2bp
chr5 80419582 80419582 1 + T C LIHC 80419581 + 80419561 80419601 41 GCACCTCCGCTATCGACAGCCTGGAGGTAAGAGCTCAAGAG GCACCTCCGCTATCGACAGCCCGGAGGTAAGAGCTCAAGAG < 41bp 0.732130459418108 0.489801828530363 0.39435554 0.3929238 prediction 0.464260918836217 Functional Loss - RASGRF2 ENSG00000113319 CDS Human protein_coding chr5:80419581 chr5:80419582 synonymous SNV . 0 22 hm5C_associated_SNPs_73617 0 0 1 0 1 RASGRF2 chr5:80419586 5'GT 80419586 Upstream 5bp
chr2 27247085 27247085 1 + G A UCEC 27247082 + 27247062 27247102 41 GGATTACAACCCTCTGCTGGCGCGGCAGGGCCAGGACGTAG GGATTACAACCCTCTGCTGGCGCAGCAGGGCCAGGACGTAG < 41bp 0.765041785370305 0.532911999803792 0.36176604 0.29074836 prediction 0.464259571133026 Functional Loss - MAPRE3 ENSG00000084764 CDS Human protein_coding chr2:27247082 chr2:27247085 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_73618 0 0 1 0 1 MAPRE3 chr2:27247165 5'GT 27247165 Upstream 81bp
chr11 70049785 70049785 1 + G T LIHC 70049782 + 70049762 70049802 41 TGCTCGCCTCCCTGCGGCGCCACGACCTGCTGCGGCGCGTC TGCTCGCCTCCCTGCGGCGCCACTACCTGCTGCGGCGCGTC < 41bp 0.918771379654556 0.686643491158288 0.07962376 0.025654137 prediction 0.464255776992536 Functional Loss - FADD ENSG00000168040 CDS Human protein_coding chr11:70049782 chr11:70049785 nonsynonymous SNV 0.991 5 24 hm5C_associated_SNPs_73619 0 0 1 0 1 FADD chr11:70049851 5'GT 70049851 Upstream 67bp
chr1 45271006 45271006 1 + G A PAAD 45271003 + 45270983 45271023 41 CCCTTGCTGCTGCAGTGGGTCAAGACGGATCAGGCTCTCCT CCCTTGCTGCTGCAGTGGGTCAAAACGGATCAGGCTCTCCT < 41bp 0.748425901840279 0.516302073345552 0.40984052 0.221198 prediction 0.464247656989454 Functional Loss - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45271003 chr1:45271006 synonymous SNV . 0 24 hm5C_associated_SNPs_73621 0 0 0 0 1 PLK3 chr1:45271051 5'GT 45271051 Upstream 46bp
chr14 89030019 89030019 1 + G T UCEC 89030016 + 89029996 89030036 41 GTGCCATTAAGGGGAAATTACAAGAATTAGGAGCTTATGTT GTGCCATTAAGGGGAAATTACAATAATTAGGAGCTTATGTT < 41bp 0.732121958725697 0.364688329044071 0.4883417 0.08431718 prediction 0.464243917451394 Functional Loss - ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89030016 chr14:89030019 stopgain 0.998 1 24 hm5C_associated_SNPs_73622 0 0 1 0 1 ZC3H14 chr14:89030037 5'GT 89030037 Upstream 19bp
chr2 28843845 28843845 1 + G T OV 28843842 + 28843822 28843862 41 GGCAGCGGAAGGGGCCAGAGCTAGGTGAGTAGATGCCGTAC GGCAGCGGAAGGGGCCAGAGCTATGTGAGTAGATGCCGTAC < 41bp 0.732119522317328 0.351832722776311 0.891987 0.3791998 prediction 0.464239044634657 Functional Loss - PLB1 ENSG00000163803 CDS Human protein_coding chr2:28843842 chr2:28843845 nonsynonymous SNV 0.577 2 24 hm5C_associated_SNPs_73623 0 0 0 0 2 PLB1 chr2:28843746 3'AG 28843746 Downstream 100bp
chr2 28843845 28843845 1 + G T OV 28843842 + 28843822 28843862 41 GGCAGCGGAAGGGGCCAGAGCTAGGTGAGTAGATGCCGTAC GGCAGCGGAAGGGGCCAGAGCTATGTGAGTAGATGCCGTAC < 41bp 0.732119522317328 0.351832722776311 0.891987 0.3791998 prediction 0.464239044634657 Functional Loss - PLB1 ENSG00000163803 CDS Human protein_coding chr2:28843842 chr2:28843845 nonsynonymous SNV 0.577 2 24 hm5C_associated_SNPs_73623 0 0 0 0 2 PLB1 chr2:28843845 5'GT 28843845 Upstream 1bp
chr10 119305160 119305160 1 + G A PRAD 119305157 + 119305137 119305177 41 CCGCAGGGAACGACACTAGCCCCGAGAGTTTCCTTTTGCAC CCGCAGGGAACGACACTAGCCCCAAGAGTTTCCTTTTGCAC < 41bp 0.745147076779381 0.513033153343684 0.028850317 0.034049094 prediction 0.464227846871393 Functional Loss - EMX2 ENSG00000170370 CDS Human protein_coding chr10:119305157 chr10:119305160 nonsynonymous SNV 0.979 3 24 hm5C_associated_SNPs_73627 0 0 0 0 1 EMX2 chr10:119305143 3'AG 119305143 Downstream 18bp
chr20 4705264 4705264 1 + G T SARC 4705262 + 4705242 4705282 41 GCTGCTCTTCAGCCACCTCTCTGCGGTCCAGACGAGGGGCA GCTGCTCTTCAGCCACCTCTCTTCGGTCCAGACGAGGGGCA < 41bp 0.901522243600481 0.66940839318176 0.75254214 0.2029489 prediction 0.464227700837441 Functional Loss - PRND ENSG00000171864 CDS Human protein_coding chr20:4705262 chr20:4705264 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_73628 0 0 0 0 1 PRND chr20:4705187 3'AG 4705187 Downstream 78bp
chr10 70930992 70930992 1 + A T UCEC 70930988 + 70930968 70931008 41 TCACCAGCGATTTGAATCTCCAGAATCACAGGCATCTGCCG TCACCAGCGATTTGAATCTCCAGATTCACAGGCATCTGCCG < 41bp 0.732113495495753 0.433836974218539 0.43564457 0.83232796 prediction 0.464226990991507 Functional Loss - VPS26A ENSG00000122958 CDS Human protein_coding chr10:70930988 chr10:70930992 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_73630 0 0 1 0 1 VPS26A chr10:70930912 3'AG 70930912 Downstream 81bp
chr19 7960520 7960520 1 + C T UCEC 7960518 + 7960498 7960538 41 GTGGCCGAGTTCAAGCAGTTCACGGAACAGCAGCCTGCGTT GTGGCCGAGTTCAAGCAGTTCATGGAACAGCAGCCTGCGTT < 41bp 0.807003959759083 0.574903488586205 0.12865111 0.1656856 prediction 0.464200942345756 Functional Loss - LRRC8E ENSG00000171017 CDS Human protein_coding chr19:7960518 chr19:7960520 nonsynonymous SNV 0.978 2 23 hm5C_associated_SNPs_73636 0 0 0 0 1 LRRC8E chr19:7960484 3'AG 7960484 Downstream 37bp
chr10 104159861 104159861 1 + C T UCEC 104159859 + 104159839 104159879 41 CACTGCACCTAGCCATCATCCACGGGCAGACCAGTGTCATT CACTGCACCTAGCCATCATCCATGGGCAGACCAGTGTCATT < 41bp 0.732099981216156 0.460339166029086 0.10483605 0.09854713 prediction 0.464199962432312 Functional Loss - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104159859 chr10:104159861 synonymous SNV . 0 23 hm5C_associated_SNPs_73637 0 0 0 0 2 NFKB2 chr10:104159837 3'AG 104159837 Downstream 25bp
chr10 104159861 104159861 1 + C T UCEC 104159859 + 104159839 104159879 41 CACTGCACCTAGCCATCATCCACGGGCAGACCAGTGTCATT CACTGCACCTAGCCATCATCCATGGGCAGACCAGTGTCATT < 41bp 0.732099981216156 0.460339166029086 0.10483605 0.09854713 prediction 0.464199962432312 Functional Loss - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104159859 chr10:104159861 synonymous SNV . 0 23 hm5C_associated_SNPs_73637 0 0 0 0 2 NFKB2 chr10:104159951 5'GT 104159951 Upstream 91bp
chr16 1825336 1825336 1 + G A STAD 1825333 + 1825313 1825353 41 CAGGTCTCGCCAGCACGTTTCCCGGGGGACACAGCAGCCAG CAGGTCTCGCCAGCACGTTTCCCAGGGGACACAGCAGCCAG < 41bp 0.732094466586022 0.482163057009931 0.91034853 0.19782314 prediction 0.464188933172043 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825333 chr16:1825336 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_73639 0 0 1 0 4 EME2 chr16:1825240 3'AG 1825240 Downstream 97bp
chr16 1825336 1825336 1 + G A STAD 1825333 + 1825313 1825353 41 CAGGTCTCGCCAGCACGTTTCCCGGGGGACACAGCAGCCAG CAGGTCTCGCCAGCACGTTTCCCAGGGGACACAGCAGCCAG < 41bp 0.732094466586022 0.482163057009931 0.91034853 0.19782314 prediction 0.464188933172043 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825333 chr16:1825336 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_73639 0 0 1 0 4 EME2 chr16:1825316 3'AG 1825316 Downstream 21bp
chr16 1825336 1825336 1 + G A STAD 1825333 + 1825313 1825353 41 CAGGTCTCGCCAGCACGTTTCCCGGGGGACACAGCAGCCAG CAGGTCTCGCCAGCACGTTTCCCAGGGGACACAGCAGCCAG < 41bp 0.732094466586022 0.482163057009931 0.91034853 0.19782314 prediction 0.464188933172043 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825333 chr16:1825336 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_73639 0 0 1 0 4 EME2 chr16:1825409 5'GT 1825409 Upstream 74bp
chr16 1825336 1825336 1 + G A STAD 1825333 + 1825313 1825353 41 CAGGTCTCGCCAGCACGTTTCCCGGGGGACACAGCAGCCAG CAGGTCTCGCCAGCACGTTTCCCAGGGGACACAGCAGCCAG < 41bp 0.732094466586022 0.482163057009931 0.91034853 0.19782314 prediction 0.464188933172043 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825333 chr16:1825336 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_73639 0 0 1 0 4 EME2 chr16:1825430 5'GT 1825430 Upstream 95bp
chr21 47706973 47706973 1 + A C THCA 47706969 + 47706949 47706989 41 GTGTTGACAACAAGAATATTCAGCACATTAATAGAATCTAC GTGTTGACAACAAGAATATTCAGCCCATTAATAGAATCTAC < 41bp 0.732091861424432 0.321410575681146 0.18204123 0.10074782 prediction 0.464183722848864 Functional Loss - YBEY ENSG00000182362 CDS Human protein_coding chr21:47706969 chr21:47706973 nonsynonymous SNV 0.010 0 25 hm5C_associated_SNPs_73640 0 0 1 0 1 YBEY chr21:47707037 5'GT 47707037 Upstream 65bp
chr16 90066565 90066565 1 + C T rs142824511 90066563 + 90066543 90066583 41 CCAGGTGTCCTTCGACTTTTCCCGACACGGCAAGACCCTGG CCAGGTGTCCTTCGACTTTTCCTGACACGGCAAGACCCTGG < 41bp 0.741291684320267 0.509201877411396 0.010005832 0.025880724 prediction 0.464179613817742 Functional Loss - AFG3L1P ENSG00000223959 ncRNA_exonic Human transcribed_unitary_pseudogene chr16:90066563 chr16:90066565 . . 0 23 hm5C_associated_SNPs_73643 0 0 0 0 1 AFG3L1P chr16:90066511 3'AG 90066511 Downstream 55bp
chr21 15588589 15588589 1 + G C LUSC 15588588 + 15588568 15588608 41 GTTCGGGAAGAGATTCTGTACGAGCTGTTCCTTCAGGTACC GTTCGGGAAGAGATTCTGTACCAGCTGTTCCTTCAGGTACC < 41bp 0.732086942033601 0.436679382001785 0.31697512 0.17427555 prediction 0.464173884067202 Functional Loss - RBM11 ENSG00000185272 CDS Human protein_coding chr21:15588588 chr21:15588589 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_73645 0 0 0 0 1 RBM11 chr21:15588603 5'GT 15588603 Upstream 15bp
chr20 31652627 31652627 1 + C T COAD 31652625 + 31652605 31652645 41 TCCTGCAGACCAACGGCGCCCTCGACATGGACATCACCCCT TCCTGCAGACCAACGGCGCCCTTGACATGGACATCACCCCT < 41bp 0.84076925208501 0.608682983722817 0.030408293 0.008342147 prediction 0.464172536724386 Functional Loss - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31652625 chr20:31652627 synonymous SNV . 0 23 hm5C_associated_SNPs_73646 0 0 0 0 1 BPIFB3 chr20:31652651 5'GT 31652651 Upstream 25bp
chr11 67050628 67050628 1 + T C KIRC 67050627 + 67050607 67050647 41 GCTGCCCGACTCCTTCTCCCCTGAACTACGCTCCCTGCTGG GCTGCCCGACTCCTTCTCCCCCGAACTACGCTCCCTGCTGG < 41bp 0.794693581278831 0.562611068103765 0.22157353 0.17567173 prediction 0.464165026350133 Functional Loss - GRK2 ENSG00000173020 CDS Human protein_coding chr11:67050627 chr11:67050628 synonymous SNV . 0 22 hm5C_associated_SNPs_73647 0 0 1 0 1 GRK2 chr11:67050599 3'AG 67050599 Downstream 30bp
chr20 3725570 3725570 1 + G A SKCM 3725567 + 3725547 3725587 41 AGGAAATGGGAGGGCGGAGACCCGGGCGTGGCCCACCAGAA AGGAAATGGGAGGGCGGAGACCCAGGCGTGGCCCACCAGAA < 41bp 0.765482661527944 0.533401708480274 0.9056548 0.8228565 prediction 0.464161906095339 Functional Loss - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3725567 chr20:3725570 synonymous SNV . 0 24 hm5C_associated_SNPs_73651 0 0 0 0 1 HSPA12B chr20:3725549 3'AG 3725549 Downstream 22bp
chr10 5960384 5960384 1 + G T UCEC 5960381 + 5960361 5960401 41 CACCAGCAGATCTATACCTTCCGGGGTGCGGTCAACGCCCT CACCAGCAGATCTATACCTTCCGTGGTGCGGTCAACGCCCT < 41bp 0.732079305915839 0.32975979071103 0.89026415 0.35917714 prediction 0.464158611831677 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5960381 chr10:5960384 synonymous SNV . 0 24 hm5C_associated_SNPs_73652 0 0 0 0 2 FBXO18 chr10:5960305 3'AG 5960305 Downstream 80bp
chr10 5960384 5960384 1 + G T UCEC 5960381 + 5960361 5960401 41 CACCAGCAGATCTATACCTTCCGGGGTGCGGTCAACGCCCT CACCAGCAGATCTATACCTTCCGTGGTGCGGTCAACGCCCT < 41bp 0.732079305915839 0.32975979071103 0.89026415 0.35917714 prediction 0.464158611831677 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5960381 chr10:5960384 synonymous SNV . 0 24 hm5C_associated_SNPs_73652 0 0 0 0 2 FBXO18 chr10:5960441 5'GT 5960441 Upstream 58bp
chr9 103060228 103060228 1 + C T rs201136636 103060226 + 103060206 103060246 41 GGTTCATTTCAGGTTGTTCTCACGAAGGGAAAATACATCAT GGTTCATTTCAGGTTGTTCTCATGAAGGGAAAATACATCAT < 41bp 0.834003167498333 0.601924345892611 0.26269656 0.3176087 prediction 0.464157643211443 Functional Loss - INVS ENSG00000119509 CDS Human protein_coding chr9:103060226 chr9:103060228 synonymous SNV . 0 23 hm5C_associated_SNPs_73653 1 0 0 0 2 INVS chr9:103060218 3'AG 103060218 Downstream 11bp
chr9 103060228 103060228 1 + C T rs201136636 103060226 + 103060206 103060246 41 GGTTCATTTCAGGTTGTTCTCACGAAGGGAAAATACATCAT GGTTCATTTCAGGTTGTTCTCATGAAGGGAAAATACATCAT < 41bp 0.834003167498333 0.601924345892611 0.26269656 0.3176087 prediction 0.464157643211443 Functional Loss - INVS ENSG00000119509 CDS Human protein_coding chr9:103060226 chr9:103060228 synonymous SNV . 0 23 hm5C_associated_SNPs_73653 1 0 0 0 2 INVS chr9:103060292 5'GT 103060292 Upstream 65bp
chr9 37304308 37304308 1 + C T PRAD 37304306 + 37304286 37304326 41 ATCAAAAAACTGCCCCTTACCACGAGTACGTGAAATATGCT ATCAAAAAACTGCCCCTTACCATGAGTACGTGAAATATGCT < 41bp 0.732075859872007 0.44312022745997 0.352455 0.27821583 prediction 0.464151719744015 Functional Loss - ZCCHC7 ENSG00000147905 CDS Human protein_coding chr9:37304306 chr9:37304308 stopgain 0.737 0 23 hm5C_associated_SNPs_73654 0 0 1 0 1 ZCCHC7 chr9:37304310 5'GT 37304310 Upstream 3bp
chr19 50390808 50390808 1 + C T HNSC 50390806 + 50390786 50390826 41 TTCAAGAGGGAATTCCCCTTCCCGGATGTCCTTCGGCTGTG TTCAAGAGGGAATTCCCCTTCCTGGATGTCCTTCGGCTGTG < 41bp 0.732069033659065 0.466513285142183 0.31727654 0.2931877 prediction 0.464138067318129 Functional Loss - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50390806 chr19:50390808 nonsynonymous SNV 0.988 0 23 hm5C_associated_SNPs_73659 0 0 1 0 2 TBC1D17 chr19:50390733 3'AG 50390733 Downstream 76bp
chr19 50390808 50390808 1 + C T HNSC 50390806 + 50390786 50390826 41 TTCAAGAGGGAATTCCCCTTCCCGGATGTCCTTCGGCTGTG TTCAAGAGGGAATTCCCCTTCCTGGATGTCCTTCGGCTGTG < 41bp 0.732069033659065 0.466513285142183 0.31727654 0.2931877 prediction 0.464138067318129 Functional Loss - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50390806 chr19:50390808 nonsynonymous SNV 0.988 0 23 hm5C_associated_SNPs_73659 0 0 1 0 2 TBC1D17 chr19:50390830 5'GT 50390830 Upstream 23bp
chr3 9787362 9787362 1 + C T SKCM 9787359 + 9787339 9787379 41 GGCACTGAGAATGAGGCCTACTCCGTGGGCACTGGCCGCGG GGCACTGAGAATGAGGCCTACTCTGTGGGCACTGGCCGCGG < 41bp 0.734255706582262 0.502188720158941 0.29262453 0.1830166 prediction 0.464133972846642 Functional Loss - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9787359 chr3:9787362 synonymous SNV . 0 24 hm5C_associated_SNPs_73660 0 0 1 0 1 BRPF1 chr3:9787393 5'GT 9787393 Upstream 32bp
chr18 67508572 67508572 1 + C T UCEC 67508570 + 67508550 67508590 41 AGAGGCCCAGCAGCCGTTGTCGCGGTCCAGCAGCTATGGAT AGAGGCCCAGCAGCCGTTGTCGTGGTCCAGCAGCTATGGAT < 41bp 0.732066741238742 0.478189472931608 0.9331907 0.93067396 prediction 0.464133482477485 Functional Loss - DOK6 ENSG00000206052 CDS Human protein_coding chr18:67508570 chr18:67508572 nonsynonymous SNV 0.659 2 23 hm5C_associated_SNPs_73661 0 0 0 0 1 DOK6 chr18:67508480 3'AG 67508480 Downstream 93bp
chr11 65561713 65561713 1 + G A BLCA 65561710 + 65561690 65561730 41 GACCATGGCTTCCTGCGCACCAAGATGAAGGTAATGCCACT GACCATGGCTTCCTGCGCACCAAAATGAAGGTAATGCCACT < 41bp 0.737053252846187 0.504993489150211 0.024150819 0.048298568 prediction 0.464119527391952 Functional Loss - OVOL1 ENSG00000172818 CDS Human protein_coding chr11:65561710 chr11:65561713 synonymous SNV . 0 24 hm5C_associated_SNPs_73663 0 0 0 0 1 OVOL1 chr11:65561719 5'GT 65561719 Upstream 7bp
chr10 135352302 135352302 1 + G T BLCA 135352299 + 135352279 135352319 41 TCTAGGAAAACGAGTGTGTGCTGGAGAAGGCCTGGCTCGCA TCTAGGAAAACGAGTGTGTGCTGTAGAAGGCCTGGCTCGCA < 41bp 0.732051906281223 0.3474070134388 0.67507803 0.3129604 prediction 0.464103812562445 Functional Loss - CYP2E1 ENSG00000130649 CDS Human protein_coding chr10:135352299 chr10:135352302 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_73668 0 0 0 0 1 CYP2E1 chr10:135352284 3'AG 135352284 Downstream 19bp
chr19 50360304 50360304 1 + A C UCEC 50360300 + 50360280 50360320 41 CTCATGCTCCTGTACTCGTCCAAGAAGAAGATCTTCATGGG CTCATGCTCCTGTACTCGTCCAAGCAGAAGATCTTCATGGG < 41bp 0.732051818401322 0.317172247586657 0.41506398 0.3343653 prediction 0.464103636802645 Functional Loss - PTOV1 ENSG00000104960 CDS Human protein_coding chr19:50360300 chr19:50360304 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_73669 0 0 0 0 2 PTOV1 chr19:50360232 3'AG 50360232 Downstream 73bp
chr19 50360304 50360304 1 + A C UCEC 50360300 + 50360280 50360320 41 CTCATGCTCCTGTACTCGTCCAAGAAGAAGATCTTCATGGG CTCATGCTCCTGTACTCGTCCAAGCAGAAGATCTTCATGGG < 41bp 0.732051818401322 0.317172247586657 0.41506398 0.3343653 prediction 0.464103636802645 Functional Loss - PTOV1 ENSG00000104960 CDS Human protein_coding chr19:50360300 chr19:50360304 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_73669 0 0 0 0 2 PTOV1 chr19:50360387 5'GT 50360387 Upstream 84bp
chr4 156725859 156725859 1 + G T COAD 156725857 + 156725837 156725877 41 CACAAGCCGAACAGAAACCACAGGAGAAAAGGGAAAAATAA CACAAGCCGAACAGAAACCACATGAGAAAAGGGAAAAATAA < 41bp 0.732048337547516 0.407724075765502 0.68433106 0.37660578 prediction 0.464096675095031 Functional Loss - GUCY1B3 ENSG00000061918 CDS Human protein_coding chr4:156725857 chr4:156725859 stopgain 0.998 1 23 hm5C_associated_SNPs_73671 0 0 0 0 1 GUCY1B3 chr4:156725899 5'GT 156725899 Upstream 41bp
chr17 34942353 34942353 1 + G T LUAD 34942351 + 34942331 34942371 41 AACAGGTTCTCGGGAGGGTTCGGATGTTGCCTGCACTGAAG AACAGGTTCTCGGGAGGGTTCGTATGTTGCCTGCACTGAAG < 41bp 0.732044529224882 0.38492747876612 0.8852719 0.092707545 prediction 0.464089058449764 Functional Loss - GGNBP2 ENSG00000005955 CDS Human other chr17:34942351 chr17:34942353 nonsynonymous SNV 0.968 3 23 hm5C_associated_SNPs_73674 0 0 1 5 2 GGNBP2 chr17:34942270 3'AG 34942270 Downstream 84bp
chr17 34942353 34942353 1 + G T LUAD 34942351 + 34942331 34942371 41 AACAGGTTCTCGGGAGGGTTCGGATGTTGCCTGCACTGAAG AACAGGTTCTCGGGAGGGTTCGTATGTTGCCTGCACTGAAG < 41bp 0.732044529224882 0.38492747876612 0.8852719 0.092707545 prediction 0.464089058449764 Functional Loss - GGNBP2 ENSG00000005955 CDS Human other chr17:34942351 chr17:34942353 nonsynonymous SNV 0.968 3 23 hm5C_associated_SNPs_73674 0 0 1 5 2 GGNBP2 chr17:34942395 5'GT 34942395 Upstream 43bp
chr12 113711406 113711406 1 + G A COAD 113711403 + 113711383 113711423 41 TGTGATGATGCCCTCCTACTCCCGGAACCCCTGGTCCTGCG TGTGATGATGCCCTCCTACTCCCAGAACCCCTGGTCCTGCG < 41bp 0.73204024033367 0.485477719087983 0.062167853 0.03325361 prediction 0.46408048066734 Functional Loss - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113711403 chr12:113711406 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_73675 0 0 1 0 2 TPCN1 chr12:113711374 3'AG 113711374 Downstream 33bp
chr12 113711406 113711406 1 + G A COAD 113711403 + 113711383 113711423 41 TGTGATGATGCCCTCCTACTCCCGGAACCCCTGGTCCTGCG TGTGATGATGCCCTCCTACTCCCAGAACCCCTGGTCCTGCG < 41bp 0.73204024033367 0.485477719087983 0.062167853 0.03325361 prediction 0.46408048066734 Functional Loss - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113711403 chr12:113711406 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_73675 0 0 1 0 2 TPCN1 chr12:113711473 5'GT 113711473 Upstream 68bp
chr3 111732356 111732356 1 + G T COAD 111732353 + 111732333 111732373 41 GGCAGCAACAAGGGAGCCTCCCAGGCGGGCATGACAGGGTA GGCAGCAACAAGGGAGCCTCCCATGCGGGCATGACAGGGTA < 41bp 0.732039111169655 0.340363022549834 0.27051395 0.083571315 prediction 0.46407822233931 Functional Loss - TAGLN3 ENSG00000144834 CDS Human protein_coding chr3:111732353 chr3:111732356 nonsynonymous SNV 0.992 5 24 hm5C_associated_SNPs_73676 0 0 1 0 1 TAGLN3 chr3:111732257 3'AG 111732257 Downstream 100bp
chr15 65226377 65226377 1 + G A rs141471183 65226374 + 65226354 65226394 41 CACTATGCAGCCCTCAGTGGCTCGGAGGATGTGTCTCGGGT CACTATGCAGCCCTCAGTGGCTCAGAGGATGTGTCTCGGGT < 41bp 0.732038748950332 0.484079856749489 0.12840545 0.103931606 prediction 0.464077497900663 Functional Loss - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65226374 chr15:65226377 synonymous SNV . 0 24 hm5C_associated_SNPs_73677 0 0 0 0 2 ANKDD1A chr15:65226336 3'AG 65226336 Downstream 42bp
chr15 65226377 65226377 1 + G A rs141471183 65226374 + 65226354 65226394 41 CACTATGCAGCCCTCAGTGGCTCGGAGGATGTGTCTCGGGT CACTATGCAGCCCTCAGTGGCTCAGAGGATGTGTCTCGGGT < 41bp 0.732038748950332 0.484079856749489 0.12840545 0.103931606 prediction 0.464077497900663 Functional Loss - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65226374 chr15:65226377 synonymous SNV . 0 24 hm5C_associated_SNPs_73677 0 0 0 0 2 ANKDD1A chr15:65226434 5'GT 65226434 Upstream 58bp
chr15 65226376 65226376 1 + C T COAD 65226374 + 65226354 65226394 41 CACTATGCAGCCCTCAGTGGCTCGGAGGATGTGTCTCGGGT CACTATGCAGCCCTCAGTGGCTTGGAGGATGTGTCTCGGGT < 41bp 0.732038748950332 0.447761148141534 0.12840545 0.15147018 prediction 0.464077497900663 Functional Loss - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65226374 chr15:65226376 nonsynonymous SNV 0.170 1 23 hm5C_associated_SNPs_73678 0 0 0 0 2 ANKDD1A chr15:65226336 3'AG 65226336 Downstream 41bp
chr15 65226376 65226376 1 + C T COAD 65226374 + 65226354 65226394 41 CACTATGCAGCCCTCAGTGGCTCGGAGGATGTGTCTCGGGT CACTATGCAGCCCTCAGTGGCTTGGAGGATGTGTCTCGGGT < 41bp 0.732038748950332 0.447761148141534 0.12840545 0.15147018 prediction 0.464077497900663 Functional Loss - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65226374 chr15:65226376 nonsynonymous SNV 0.170 1 23 hm5C_associated_SNPs_73678 0 0 0 0 2 ANKDD1A chr15:65226434 5'GT 65226434 Upstream 59bp
chr10 82369198 82369198 1 + G C BLCA 82369197 + 82369177 82369217 41 CAGCAGGACCTGGGAGCGCCCGCTGCGCCCAGTCTCCAGAG CAGCAGGACCTGGGAGCGCCCCCTGCGCCCAGTCTCCAGAG < 41bp 0.732037269179082 0.399919028021007 0.012985945 0.00803259 prediction 0.464074538358163 Functional Loss - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82369197 chr10:82369198 synonymous SNV . 0 22 hm5C_associated_SNPs_73679 0 0 0 0 2 SH2D4B chr10:82369180 3'AG 82369180 Downstream 19bp
chr10 82369198 82369198 1 + G C BLCA 82369197 + 82369177 82369217 41 CAGCAGGACCTGGGAGCGCCCGCTGCGCCCAGTCTCCAGAG CAGCAGGACCTGGGAGCGCCCCCTGCGCCCAGTCTCCAGAG < 41bp 0.732037269179082 0.399919028021007 0.012985945 0.00803259 prediction 0.464074538358163 Functional Loss - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82369197 chr10:82369198 synonymous SNV . 0 22 hm5C_associated_SNPs_73679 0 0 0 0 2 SH2D4B chr10:82369183 3'AG 82369183 Downstream 16bp
chr19 16884094 16884094 1 + G A UCEC 16884091 + 16884071 16884111 41 CTCGGAGGATTCCTCCAGCCCCCGGGAGGACCCCTCCGGGC CTCGGAGGATTCCTCCAGCCCCCAGGAGGACCCCTCCGGGC < 41bp 0.732036138285912 0.469655341256688 0.78023887 0.47420427 prediction 0.464072276571823 Functional Loss - NWD1 ENSG00000188039 CDS Human protein_coding chr19:16884091 chr19:16884094 synonymous SNV . 0 24 hm5C_associated_SNPs_73681 0 0 0 0 1 NWD1 chr19:16884134 5'GT 16884134 Upstream 41bp
chr22 45683324 45683324 1 + G A UCEC 45683321 + 45683301 45683341 41 AACGCACCCCTGTCGGCAGCCACGGAGTACAGGTGGGTGTA AACGCACCCCTGTCGGCAGCCACAGAGTACAGGTGGGTGTA < 41bp 0.732033297765387 0.488658138976314 0.41746104 0.32345235 prediction 0.464066595530773 Functional Loss - UPK3A ENSG00000100373 CDS Human protein_coding chr22:45683321 chr22:45683324 synonymous SNV . 0 24 hm5C_associated_SNPs_73682 0 0 1 0 1 UPK3A chr22:45683332 5'GT 45683332 Upstream 9bp
chr12 7310611 7310611 1 + G A PAAD 7310608 + 7310588 7310628 41 GAGGATGAGGACAGCAGTGACTCGGAGGTGGCCGATTCCCC GAGGATGAGGACAGCAGTGACTCAGAGGTGGCCGATTCCCC < 41bp 0.740516034653038 0.508483578907871 0.19187266 0.16274372 prediction 0.464064911490332 Functional Loss - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7310608 chr12:7310611 synonymous SNV . 0 24 hm5C_associated_SNPs_73683 0 0 1 0 1 CLSTN3 chr12:7310537 3'AG 7310537 Downstream 75bp
chr1 42619139 42619139 1 + A C rs1047047 42619138 + 42619118 42619158 41 CGCGATGGGCTGCAGGGCTGCATCAGGGCTCCTGCCAGGAG CGCGATGGGCTGCAGGGCTGCCTCAGGGCTCCTGCCAGGAG < 41bp 0.732030015208841 0.496744074358089 0.37398311 0.18933085 prediction 0.464060030417681 Functional Loss - GUCA2B ENSG00000044012 CDS Human protein_coding chr1:42619138 chr1:42619139 synonymous SNV . 0 22 hm5C_associated_SNPs_73684 0 0 0 0 1 GUCA2B chr1:42619211 5'GT 42619211 Upstream 73bp
chr16 89167717 89167717 1 + A C rs538548478 89167716 + 89167696 89167736 41 AGTGGGACCACGGGGAGGCCCAAGGGCGTGCTGAGCACGCA AGTGGGACCACGGGGAGGCCCCAGGGCGTGCTGAGCACGCA < 41bp 0.786105035871583 0.554077240618479 0.89547545 0.8483076 prediction 0.464055590506209 Functional Loss - ACSF3 ENSG00000176715 CDS Human protein_coding chr16:89167716 chr16:89167717 nonsynonymous SNV 0.132 5 22 hm5C_associated_SNPs_73685 0 0 1 0 1 ACSF3 chr16:89167755 5'GT 89167755 Upstream 39bp
chr22 50313456 50313456 1 + G T UCEC 50313454 + 50313434 50313474 41 GCAATCAGATGCTAGAGGCGCAGGAGGAGCACCTGGAGGCC GCAATCAGATGCTAGAGGCGCATGAGGAGCACCTGGAGGCC < 41bp 0.904120846712447 0.67209506003436 0.87547815 0.8170525 prediction 0.464051573356174 Functional Loss - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50313454 chr22:50313456 nonsynonymous SNV 0.368 0 23 hm5C_associated_SNPs_73686 0 0 1 0 2 CRELD2 chr22:50313378 3'AG 50313378 Downstream 79bp
chr22 50313456 50313456 1 + G T UCEC 50313454 + 50313434 50313474 41 GCAATCAGATGCTAGAGGCGCAGGAGGAGCACCTGGAGGCC GCAATCAGATGCTAGAGGCGCATGAGGAGCACCTGGAGGCC < 41bp 0.904120846712447 0.67209506003436 0.87547815 0.8170525 prediction 0.464051573356174 Functional Loss - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50313454 chr22:50313456 nonsynonymous SNV 0.368 0 23 hm5C_associated_SNPs_73686 0 0 1 0 2 CRELD2 chr22:50313488 5'GT 50313488 Upstream 33bp
chr3 38318925 38318925 1 + G T LUAD 38318922 + 38318902 38318942 41 CAAGGGAAGAACTTCCAGCCCGGGAGTGGCCTTTGTGAGCA CAAGGGAAGAACTTCCAGCCCGGTAGTGGCCTTTGTGAGCA < 41bp 0.919623187373085 0.687599910485452 0.8848533 0.38041252 prediction 0.464046553775265 Functional Loss - SLC22A13 ENSG00000172940 CDS Human protein_coding chr3:38318922 chr3:38318925 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_73687 0 0 0 0 1 SLC22A13 chr3:38318863 3'AG 38318863 Downstream 63bp
chr9 135464654 135464654 1 + G T SARC 135464652 + 135464632 135464672 41 AGACGGCCGTCGGGTTGGAGCTGCTGGCGGAGGCAGGCAAT AGACGGCCGTCGGGTTGGAGCTTCTGGCGGAGGCAGGCAAT < 41bp 0.73201988225778 0.394631725019124 0.51200104 0.2829366 prediction 0.46403976451556 Functional Loss - BARHL1 ENSG00000125492 CDS Human protein_coding chr9:135464652 chr9:135464654 synonymous SNV . 0 23 hm5C_associated_SNPs_73692 0 0 0 0 1 BARHL1 chr9:135464615 3'AG 135464615 Downstream 40bp
chr14 70490067 70490067 1 + G T COAD 70490064 + 70490044 70490084 41 GTGAAGAAGAAAGCCAAGCCCAAGAAATGTGCCCGGCGTTT GTGAAGAAGAAAGCCAAGCCCAATAAATGTGCCCGGCGTTT < 41bp 0.732009384569281 0.335783218933663 0.30099732 0.15849447 prediction 0.464018769138562 Functional Loss - SMOC1 ENSG00000198732 CDS Human protein_coding chr14:70490064 chr14:70490067 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_73695 0 0 1 0 1 SMOC1 chr14:70490164 5'GT 70490164 Upstream 98bp
chr17 35825566 35825566 1 + G T UCEC 35825564 + 35825544 35825584 41 GGCGGTATCCCAAGGAGGTCCAGGACCTGTATGAAACAATG GGCGGTATCCCAAGGAGGTCCATGACCTGTATGAAACAATG < 41bp 0.732000493662441 0.388355659175224 0.36440855 0.20670536 prediction 0.464000987324881 Functional Loss - TADA2A ENSG00000108264 CDS Human other chr17:35825564 chr17:35825566 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_73696 0 0 1 0 2 TADA2A chr17:35825535 3'AG 35825535 Downstream 32bp
chr17 35825566 35825566 1 + G T UCEC 35825564 + 35825544 35825584 41 GGCGGTATCCCAAGGAGGTCCAGGACCTGTATGAAACAATG GGCGGTATCCCAAGGAGGTCCATGACCTGTATGAAACAATG < 41bp 0.732000493662441 0.388355659175224 0.36440855 0.20670536 prediction 0.464000987324881 Functional Loss - TADA2A ENSG00000108264 CDS Human other chr17:35825564 chr17:35825566 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_73696 0 0 1 0 2 TADA2A chr17:35825645 5'GT 35825645 Upstream 80bp
chr1 236925826 236925826 1 + G T LUSC 236925823 + 236925803 236925843 41 GATCAGGCCCAGTACTGCATCAAGAGGATGCCCGCCTACTC GATCAGGCCCAGTACTGCATCAATAGGATGCCCGCCTACTC < 41bp 0.920871429392102 0.688871779122203 0.893326 0.3778793 prediction 0.463999300539797 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236925823 chr1:236925826 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_73698 0 0 1 0 1 ACTN2 chr1:236925761 3'AG 236925761 Downstream 66bp
chr14 89038503 89038503 1 + C T rs199755342 89038501 + 89038481 89038521 41 CCACCACTTGCCATTCCTAGCGCGAGACCTGAAAAAAGAGA CCACCACTTGCCATTCCTAGCGTGAGACCTGAAAAAAGAGA < 41bp 0.824703400924681 0.592704747132056 0.3139053 0.36578417 prediction 0.463997307585251 Functional Loss - ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89038501 chr14:89038503 nonsynonymous SNV 0.042 1 23 hm5C_associated_SNPs_73699 0 0 1 0 2 ZC3H14 chr14:89038479 3'AG 89038479 Downstream 25bp
chr14 89038503 89038503 1 + C T rs199755342 89038501 + 89038481 89038521 41 CCACCACTTGCCATTCCTAGCGCGAGACCTGAAAAAAGAGA CCACCACTTGCCATTCCTAGCGTGAGACCTGAAAAAAGAGA < 41bp 0.824703400924681 0.592704747132056 0.3139053 0.36578417 prediction 0.463997307585251 Functional Loss - ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89038501 chr14:89038503 nonsynonymous SNV 0.042 1 23 hm5C_associated_SNPs_73699 0 0 1 0 2 ZC3H14 chr14:89038569 5'GT 89038569 Upstream 67bp
chr2 228786194 228786194 1 + G A PRAD 228786191 + 228786171 228786211 41 TAGAATCTGGGATGCTCAGACTGGCCAGTGCCTCCAGGTTC TAGAATCTGGGATGCTCAGACTGACCAGTGCCTCCAGGTTC < 41bp 0.731997121162324 0.49051155594982 0.23038688 0.14731565 prediction 0.463994242324649 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228786191 chr2:228786194 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_73701 0 0 0 3 2 DAW1 chr2:228786115 3'AG 228786115 Downstream 80bp
chr2 228786194 228786194 1 + G A PRAD 228786191 + 228786171 228786211 41 TAGAATCTGGGATGCTCAGACTGGCCAGTGCCTCCAGGTTC TAGAATCTGGGATGCTCAGACTGACCAGTGCCTCCAGGTTC < 41bp 0.731997121162324 0.49051155594982 0.23038688 0.14731565 prediction 0.463994242324649 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228786191 chr2:228786194 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_73701 0 0 0 3 2 DAW1 chr2:228786277 5'GT 228786277 Upstream 84bp
chr19 14578764 14578764 1 + G A UCEC 14578761 + 14578741 14578781 41 GAAGAAAGGGGACATTGTGGCCCGAGACGAGGTGGAGAGGT GAAGAAAGGGGACATTGTGGCCCAAGACGAGGTGGAGAGGT < 41bp 0.743292132111426 0.511301776034822 0.20680934 0.08127296 prediction 0.463980712153207 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14578761 chr19:14578764 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_73704 0 0 1 0 2 PKN1 chr19:14578688 3'AG 14578688 Downstream 77bp
chr19 14578764 14578764 1 + G A UCEC 14578761 + 14578741 14578781 41 GAAGAAAGGGGACATTGTGGCCCGAGACGAGGTGGAGAGGT GAAGAAAGGGGACATTGTGGCCCAAGACGAGGTGGAGAGGT < 41bp 0.743292132111426 0.511301776034822 0.20680934 0.08127296 prediction 0.463980712153207 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14578761 chr19:14578764 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_73704 0 0 1 0 2 PKN1 chr19:14578779 5'GT 14578779 Upstream 16bp
chr12 21229466 21229466 1 + C T GBM 21229464 + 21229444 21229484 41 GTCCACCAACAGCTGTGGAGCACGAGGGGCTTGTAGGATAT GTCCACCAACAGCTGTGGAGCATGAGGGGCTTGTAGGATAT < 41bp 0.823303974798801 0.591328317179973 0.60096705 0.60008895 prediction 0.463951315237656 Functional Loss - SLCO1B7 ENSG00000111700;ENSG00000205754;ENSG00000257046;ENSG00000257062 CDS Human other chr12:21229464 chr12:21229466 stopgain 0.001 0 23 hm5C_associated_SNPs_73712 0 0 0 0 2 SLCO1B7 chr12:21229386 3'AG 21229386 Downstream 81bp
chr12 21229466 21229466 1 + C T GBM 21229464 + 21229444 21229484 41 GTCCACCAACAGCTGTGGAGCACGAGGGGCTTGTAGGATAT GTCCACCAACAGCTGTGGAGCATGAGGGGCTTGTAGGATAT < 41bp 0.823303974798801 0.591328317179973 0.60096705 0.60008895 prediction 0.463951315237656 Functional Loss - SLCO1B7 ENSG00000111700;ENSG00000205754;ENSG00000257046;ENSG00000257062 CDS Human other chr12:21229464 chr12:21229466 stopgain 0.001 0 23 hm5C_associated_SNPs_73712 0 0 0 0 2 SLCO1B7 chr12:21229503 5'GT 21229503 Upstream 38bp
chrX 69711983 69711983 1 + G A CESC 69711980 + 69711960 69712000 41 CCTGTTTGATTATGATCGGACTCGGGACAGCTGCCTGCCAA CCTGTTTGATTATGATCGGACTCAGGACAGCTGCCTGCCAA < 41bp 0.759192335859184 0.5272186354571 0.858016 0.621825 prediction 0.463947400804168 Functional Loss - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69711980 chrX:69711983 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_73714 0 0 1 0 1 DLG3 chrX:69711957 3'AG 69711957 Downstream 27bp
chr8 26441409 26441409 1 + C T CESC 26441407 + 26441387 26441427 41 CGGAGGAATTGACGTCCACACTCGTTTCCAGATGCCTGATC CGGAGGAATTGACGTCCACACTTGTTTCCAGATGCCTGATC < 41bp 0.731973542362593 0.441663008147973 0.033383816 0.04946986 prediction 0.463947084725187 Functional Loss - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26441407 chr8:26441409 nonsynonymous SNV 0.690 2 23 hm5C_associated_SNPs_73716 0 0 1 0 2 DPYSL2 chr8:26441315 3'AG 26441315 Downstream 95bp
chr8 26441409 26441409 1 + C T CESC 26441407 + 26441387 26441427 41 CGGAGGAATTGACGTCCACACTCGTTTCCAGATGCCTGATC CGGAGGAATTGACGTCCACACTTGTTTCCAGATGCCTGATC < 41bp 0.731973542362593 0.441663008147973 0.033383816 0.04946986 prediction 0.463947084725187 Functional Loss - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26441407 chr8:26441409 nonsynonymous SNV 0.690 2 23 hm5C_associated_SNPs_73716 0 0 1 0 2 DPYSL2 chr8:26441499 5'GT 26441499 Upstream 91bp
chr8 26441410 26441410 1 + G A STAD 26441407 + 26441387 26441427 41 CGGAGGAATTGACGTCCACACTCGTTTCCAGATGCCTGATC CGGAGGAATTGACGTCCACACTCATTTCCAGATGCCTGATC < 41bp 0.731973542362593 0.483588667598917 0.033383816 0.036301285 prediction 0.463947084725187 Functional Loss - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26441407 chr8:26441410 nonsynonymous SNV 0.803 3 24 hm5C_associated_SNPs_73717 0 0 1 0 2 DPYSL2 chr8:26441315 3'AG 26441315 Downstream 96bp
chr8 26441410 26441410 1 + G A STAD 26441407 + 26441387 26441427 41 CGGAGGAATTGACGTCCACACTCGTTTCCAGATGCCTGATC CGGAGGAATTGACGTCCACACTCATTTCCAGATGCCTGATC < 41bp 0.731973542362593 0.483588667598917 0.033383816 0.036301285 prediction 0.463947084725187 Functional Loss - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26441407 chr8:26441410 nonsynonymous SNV 0.803 3 24 hm5C_associated_SNPs_73717 0 0 1 0 2 DPYSL2 chr8:26441499 5'GT 26441499 Upstream 90bp
chrX 153060173 153060173 1 + G T BRCA 153060170 + 153060150 153060190 41 CGATGGCATCTCTCGGCGCCCTGGCGCTGCTCCTGCTGTCC CGATGGCATCTCTCGGCGCCCTGTCGCTGCTCCTGCTGTCC < 41bp 0.731970835316526 0.33158494567069 0.81789374 0.27716884 prediction 0.463941670633051 Functional Loss - SSR4 ENSG00000180879 CDS Human protein_coding chrX:153060170 chrX:153060173 nonsynonymous SNV 0.837 0 24 hm5C_associated_SNPs_73720 0 0 1 0 2 SSR4 chrX:153060129 3'AG 153060129 Downstream 45bp
chrX 153060173 153060173 1 + G T BRCA 153060170 + 153060150 153060190 41 CGATGGCATCTCTCGGCGCCCTGGCGCTGCTCCTGCTGTCC CGATGGCATCTCTCGGCGCCCTGTCGCTGCTCCTGCTGTCC < 41bp 0.731970835316526 0.33158494567069 0.81789374 0.27716884 prediction 0.463941670633051 Functional Loss - SSR4 ENSG00000180879 CDS Human protein_coding chrX:153060170 chrX:153060173 nonsynonymous SNV 0.837 0 24 hm5C_associated_SNPs_73720 0 0 1 0 2 SSR4 chrX:153060209 5'GT 153060209 Upstream 37bp
chr10 119014871 119014871 1 + G C SKCM 119014867 + 119014847 119014887 41 GTGCTGGCCGCCCTGGTACTCTTGGATGGAGGTGAGTGAGT GTGCTGGCCGCCCTGGTACTCTTGCATGGAGGTGAGTGAGT < 41bp 0.731962330092094 0.446822730382451 0.35280132 0.20679468 prediction 0.463924660184189 Functional Loss - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119014867 chr10:119014871 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_73722 0 0 0 0 2 SLC18A2 chr10:119014788 3'AG 119014788 Downstream 84bp
chr10 119014871 119014871 1 + G C SKCM 119014867 + 119014847 119014887 41 GTGCTGGCCGCCCTGGTACTCTTGGATGGAGGTGAGTGAGT GTGCTGGCCGCCCTGGTACTCTTGCATGGAGGTGAGTGAGT < 41bp 0.731962330092094 0.446822730382451 0.35280132 0.20679468 prediction 0.463924660184189 Functional Loss - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119014867 chr10:119014871 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_73722 0 0 0 0 2 SLC18A2 chr10:119014877 5'GT 119014877 Upstream 7bp
chr9 97321385 97321385 1 - C T SKCM 97321388 - 97321368 97321408 41 CTCCTGTATGAATGCAATCCCGTGGCCTACATCATTGAGCA CTCCTGTATGAATGCAATCCCGTAGCCTACATCATTGAGCA < 41bp 0.753649724427682 0.521699691204511 0.28242892 0.14046258 prediction 0.463900066446342 Functional Loss - FBP2 ENSG00000130957 CDS Human protein_coding chr9:97321388 chr9:97321385 synonymous SNV . 0 24 hm5C_associated_SNPs_73730 0 0 0 0 1 FBP2 chr9:97321414 3'AG 97321414 Downstream 30bp
chr2 99812092 99812092 1 + C T STAD 99812090 + 99812070 99812110 41 GCAGAGGAGAACATGTCTAACACGTGCCTCAAAAGCACTGG GCAGAGGAGAACATGTCTAACATGTGCCTCAAAAGCACTGG < 41bp 0.784955083200482 0.553005565376382 0.08076951 0.029179573 prediction 0.4638990356482 Functional Loss - MRPL30 ENSG00000185414;ENSG00000241962 CDS Human other chr2:99812090 chr2:99812092 nonsynonymous SNV 0.960 1 23 hm5C_associated_SNPs_73731 0 0 1 0 1 MRPL30 chr2:99812036 3'AG 99812036 Downstream 57bp
chr3 101443556 101443556 1 + C T LUAD 101443554 + 101443534 101443574 41 GCGTGGACGCGGCTTTGCCTCCCGGAGAAGGTAAGGCGATC GCGTGGACGCGGCTTTGCCTCCTGGAGAAGGTAAGGCGATC < 41bp 0.733260787039368 0.501311288106557 0.7118928 0.3904517 prediction 0.463898997865622 Functional Loss - CEP97 ENSG00000182504 CDS Human protein_coding chr3:101443554 chr3:101443556 synonymous SNV . 0 23 hm5C_associated_SNPs_73732 0 0 1 0 1 CEP97 chr3:101443563 5'GT 101443563 Upstream 8bp
chr19 39116671 39116671 1 + G A LUSC 39116668 + 39116648 39116688 41 TTAATGCTTCCTCCTCCCAGCAAGAAGAACGGCCAATCCGA TTAATGCTTCCTCCTCCCAGCAAAAAGAACGGCCAATCCGA < 41bp 0.773682746398109 0.54173495487072 0.20051593 0.13492456 prediction 0.463895583054777 Functional Loss - EIF3K ENSG00000178982 CDS Human protein_coding chr19:39116668 chr19:39116671 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_73733 0 0 1 0 2 EIF3K chr19:39116668 3'AG 39116668 Downstream 4bp
chr19 39116671 39116671 1 + G A LUSC 39116668 + 39116648 39116688 41 TTAATGCTTCCTCCTCCCAGCAAGAAGAACGGCCAATCCGA TTAATGCTTCCTCCTCCCAGCAAAAAGAACGGCCAATCCGA < 41bp 0.773682746398109 0.54173495487072 0.20051593 0.13492456 prediction 0.463895583054777 Functional Loss - EIF3K ENSG00000178982 CDS Human protein_coding chr19:39116668 chr19:39116671 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_73733 0 0 1 0 2 EIF3K chr19:39116742 5'GT 39116742 Upstream 72bp
chr2 239037448 239037448 1 + G T LUSC 239037445 + 239037425 239037465 41 CATCGACGGGCTGGTGCCCACGCGGGATGAGCGCGGCCAGC CATCGACGGGCTGGTGCCCACGCTGGATGAGCGCGGCCAGC < 41bp 0.930167104265137 0.698220437449072 0.8324999 0.31683218 prediction 0.463893333632129 Functional Loss - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239037445 chr2:239037448 nonsynonymous SNV 0.526 0 24 hm5C_associated_SNPs_73734 0 0 0 0 1 ESPNL chr2:239037545 5'GT 239037545 Upstream 98bp
chr12 9009913 9009913 1 + G A COAD 9009910 + 9009890 9009930 41 GCTGACGGAGGAGATCAGGTCTCGGGCAGTGGGTTTCCTGG GCTGACGGAGGAGATCAGGTCTCAGGCAGTGGGTTTCCTGG < 41bp 0.77649753525981 0.544551114508372 0.48002797 0.38010424 prediction 0.463892841502877 Functional Loss - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9009910 chr12:9009913 nonsynonymous SNV 0.564 1 24 hm5C_associated_SNPs_73735 0 0 0 0 1 A2ML1 chr12:9009936 5'GT 9009936 Upstream 24bp
chr19 41826289 41826289 1 + G A UCEC 41826286 + 41826266 41826306 41 TCGGAGGCCTGGGTTCCCGACTCGGAGGAGAGGCTGATCCT TCGGAGGCCTGGGTTCCCGACTCAGAGGAGAGGCTGATCCT < 41bp 0.770865437911424 0.538919534204663 0.33837914 0.27610856 prediction 0.463891807413521 Functional Loss - CCDC97 ENSG00000142039 CDS Human protein_coding chr19:41826286 chr19:41826289 synonymous SNV . 0 24 hm5C_associated_SNPs_73736 0 0 1 0 2 CCDC97 chr19:41826246 3'AG 41826246 Downstream 44bp
chr19 41826289 41826289 1 + G A UCEC 41826286 + 41826266 41826306 41 TCGGAGGCCTGGGTTCCCGACTCGGAGGAGAGGCTGATCCT TCGGAGGCCTGGGTTCCCGACTCAGAGGAGAGGCTGATCCT < 41bp 0.770865437911424 0.538919534204663 0.33837914 0.27610856 prediction 0.463891807413521 Functional Loss - CCDC97 ENSG00000142039 CDS Human protein_coding chr19:41826286 chr19:41826289 synonymous SNV . 0 24 hm5C_associated_SNPs_73736 0 0 1 0 2 CCDC97 chr19:41826375 5'GT 41826375 Upstream 87bp
chrX 41206679 41206679 1 + C T HNSC 41206677 + 41206657 41206697 41 GCCGCAGTGGCGGAGGTGGCCACGGTAGCAGCAGAGGATTT GCCGCAGTGGCGGAGGTGGCCATGGTAGCAGCAGAGGATTT < 41bp 0.803758272082878 0.571817007182003 0.851792 0.84443736 prediction 0.46388252980175 Functional Loss - DDX3X ENSG00000215301 CDS Human protein_coding chrX:41206677 chrX:41206679 synonymous SNV . 0 23 hm5C_associated_SNPs_73740 0 0 1 0 1 DDX3X chrX:41206704 5'GT 41206704 Upstream 26bp
chr10 13214724 13214724 1 + G T UCEC 13214721 + 13214701 13214741 41 GCTTGATGTCCCTGCGCTACCAAGAACCAAGAGGGTGGCTC GCTTGATGTCCCTGCGCTACCAATAACCAAGAGGGTGGCTC < 41bp 0.925508367224931 0.693569381460269 0.57479596 0.07705641 prediction 0.463877971529324 Functional Loss - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13214721 chr10:13214724 nonsynonymous SNV 0.065 1 24 hm5C_associated_SNPs_73741 0 0 1 0 3 MCM10 chr10:13214625 3'AG 13214625 Downstream 100bp
chr10 13214724 13214724 1 + G T UCEC 13214721 + 13214701 13214741 41 GCTTGATGTCCCTGCGCTACCAAGAACCAAGAGGGTGGCTC GCTTGATGTCCCTGCGCTACCAATAACCAAGAGGGTGGCTC < 41bp 0.925508367224931 0.693569381460269 0.57479596 0.07705641 prediction 0.463877971529324 Functional Loss - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13214721 chr10:13214724 nonsynonymous SNV 0.065 1 24 hm5C_associated_SNPs_73741 0 0 1 0 3 MCM10 chr10:13214628 3'AG 13214628 Downstream 97bp
chr10 13214724 13214724 1 + G T UCEC 13214721 + 13214701 13214741 41 GCTTGATGTCCCTGCGCTACCAAGAACCAAGAGGGTGGCTC GCTTGATGTCCCTGCGCTACCAATAACCAAGAGGGTGGCTC < 41bp 0.925508367224931 0.693569381460269 0.57479596 0.07705641 prediction 0.463877971529324 Functional Loss - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13214721 chr10:13214724 nonsynonymous SNV 0.065 1 24 hm5C_associated_SNPs_73741 0 0 1 0 3 MCM10 chr10:13214765 5'GT 13214765 Upstream 42bp
chr7 150020563 150020563 1 + G C rs566237395 150020562 + 150020542 150020582 41 GGGCTGCGGCTCTTACCTGCCGAGGAGGCGCCGGCTCTGCG GGGCTGCGGCTCTTACCTGCCCAGGAGGCGCCGGCTCTGCG < 41bp 0.731937845314456 0.425011749354701 0.9017224 0.4242758 prediction 0.463875690628912 Functional Loss - ACTR3C;LRRC61 ENSG00000106526 CDS Human protein_coding chr7:150020562 chr7:150020563 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_73742 0 0 1 0 1 ACTR3C;LRRC61 chr7:150020649 5'GT 150020649 Upstream 87bp
chr1 23111487 23111487 1 + G A SKCM 23111484 + 23111464 23111504 41 CCCATCAAGCTCTACTGTAACGGGGACGGCGAGTGGCTGGT CCCATCAAGCTCTACTGTAACGGAGACGGCGAGTGGCTGGT < 41bp 0.77603484583468 0.544097493409739 0.911674 0.3042826 prediction 0.463874704849882 Functional Loss - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23111484 chr1:23111487 synonymous SNV . 0 24 hm5C_associated_SNPs_73743 0 0 0 0 1 EPHB2 chr1:23111569 5'GT 23111569 Upstream 83bp
chr18 9102712 9102712 1 + G T rs139650842 9102709 + 9102689 9102729 41 CGCTCGGGATTCTCGCCTGGCGCGGCTGGGGAAGGTGAACA CGCTCGGGATTCTCGCCTGGCGCTGCTGGGGAAGGTGAACA < 41bp 0.851208429556001 0.619271890108992 0.334028 0.18656063 prediction 0.463873078894017 Functional Loss - NDUFV2 ENSG00000178127 UTR5 Human protein_coding chr18:9102709 chr18:9102712 . . 0 24 hm5C_associated_SNPs_73745 1 0 1 0 1 NDUFV2 chr18:9102795 5'GT 9102795 Upstream 84bp
chr4 25415296 25415296 1 + C T UCEC 25415294 + 25415274 25415314 41 TTTGCTGTTTCCTTATTATCCTCGAAAATCATTGCATTTTG TTTGCTGTTTCCTTATTATCCTTGAAAATCATTGCATTTTG < 41bp 0.845318311599235 0.613387062116232 0.5583216 0.030326635 prediction 0.463862498966008 Functional Loss - ANAPC4 ENSG00000053900 CDS Human protein_coding chr4:25415294 chr4:25415296 stopgain 1.000 1 23 hm5C_associated_SNPs_73751 0 0 1 0 2 ANAPC4 chr4:25415267 3'AG 25415267 Downstream 30bp
chr4 25415296 25415296 1 + C T UCEC 25415294 + 25415274 25415314 41 TTTGCTGTTTCCTTATTATCCTCGAAAATCATTGCATTTTG TTTGCTGTTTCCTTATTATCCTTGAAAATCATTGCATTTTG < 41bp 0.845318311599235 0.613387062116232 0.5583216 0.030326635 prediction 0.463862498966008 Functional Loss - ANAPC4 ENSG00000053900 CDS Human protein_coding chr4:25415294 chr4:25415296 stopgain 1.000 1 23 hm5C_associated_SNPs_73751 0 0 1 0 2 ANAPC4 chr4:25415364 5'GT 25415364 Upstream 69bp
chr7 94039073 94039073 1 + A T rs148063325 94039069 + 94039049 94039089 41 TGCTGGGGCTCCCGGCCTCCCTGGACCCCGCGGTATTCCTG TGCTGGGGCTCCCGGCCTCCCTGGTCCCCGCGGTATTCCTG < 41bp 0.87959472099027 0.647669120056328 0.52159077 0.35177836 prediction 0.463851201867884 Functional Loss - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94039069 chr7:94039073 synonymous SNV . 0 25 hm5C_associated_SNPs_73752 0 0 0 0 2 COL1A2 chr7:94039035 3'AG 94039035 Downstream 39bp
chr7 94039073 94039073 1 + A T rs148063325 94039069 + 94039049 94039089 41 TGCTGGGGCTCCCGGCCTCCCTGGACCCCGCGGTATTCCTG TGCTGGGGCTCCCGGCCTCCCTGGTCCCCGCGGTATTCCTG < 41bp 0.87959472099027 0.647669120056328 0.52159077 0.35177836 prediction 0.463851201867884 Functional Loss - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94039069 chr7:94039073 synonymous SNV . 0 25 hm5C_associated_SNPs_73752 0 0 0 0 2 COL1A2 chr7:94039133 5'GT 94039133 Upstream 61bp
chr7 76112438 76112438 1 + A T LIHC 76112434 + 76112414 76112454 41 CCTGGGACCGCAGCACCTGCCCCCAGGATCCTCCACCTCCG CCTGGGACCGCAGCACCTGCCCCCTGGATCCTCCACCTCCG < 41bp 0.731918190070318 0.400214228395114 0.07620597 0.03376451 prediction 0.463836380140636 Functional Loss - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76112434 chr7:76112438 synonymous SNV . 0 25 hm5C_associated_SNPs_73759 0 0 0 0 1 DTX2 chr7:76112464 5'GT 76112464 Upstream 27bp
chr5 76249946 76249946 1 + G C LUSC 76249945 + 76249925 76249965 41 GCCTTCTTCATCAGCGAGCCCGAGGAGTTCATTACCATCCA GCCTTCTTCATCAGCGAGCCCCAGGAGTTCATTACCATCCA < 41bp 0.877283774884998 0.645366452952449 0.9022093 0.8602868 prediction 0.463834643865098 Functional Loss - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76249945 chr5:76249946 nonsynonymous SNV 0.987 0 22 hm5C_associated_SNPs_73760 0 0 0 0 1 CRHBP chr5:76250011 5'GT 76250011 Upstream 66bp
chr4 164436521 164436521 1 + G T UCEC 164436519 + 164436499 164436539 41 ATTGAGTTACATAACAGTATCAGGGACAGGCAGGGGAGGCG ATTGAGTTACATAACAGTATCATGGACAGGCAGGGGAGGCG < 41bp 0.892990920331267 0.661077308058695 0.8913758 0.2567705 prediction 0.463827224545144 Functional Loss - TMA16 ENSG00000198498 CDS Human protein_coding chr4:164436519 chr4:164436521 nonsynonymous SNV 0.959 2 23 hm5C_associated_SNPs_73764 0 0 1 0 2 TMA16 chr4:164436465 3'AG 164436465 Downstream 57bp
chr4 164436521 164436521 1 + G T UCEC 164436519 + 164436499 164436539 41 ATTGAGTTACATAACAGTATCAGGGACAGGCAGGGGAGGCG ATTGAGTTACATAACAGTATCATGGACAGGCAGGGGAGGCG < 41bp 0.892990920331267 0.661077308058695 0.8913758 0.2567705 prediction 0.463827224545144 Functional Loss - TMA16 ENSG00000198498 CDS Human protein_coding chr4:164436519 chr4:164436521 nonsynonymous SNV 0.959 2 23 hm5C_associated_SNPs_73764 0 0 1 0 2 TMA16 chr4:164436613 5'GT 164436613 Upstream 93bp
chr9 133346226 133346226 1 + C T rs10901072 133346224 + 133346204 133346244 41 CTGTCTCTTTCCTGCAGCAACACGGGATTCCCATCCCGGTC CTGTCTCTTTCCTGCAGCAACATGGGATTCCCATCCCGGTC < 41bp 0.806980385644868 0.575070359622191 0.48099864 0.79995126 prediction 0.463820052045354 Functional Loss - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133346224 chr9:133346226 synonymous SNV . 0 23 hm5C_associated_SNPs_73767 2 0 1 0 2 ASS1 chr9:133346221 3'AG 133346221 Downstream 6bp
chr9 133346226 133346226 1 + C T rs10901072 133346224 + 133346204 133346244 41 CTGTCTCTTTCCTGCAGCAACACGGGATTCCCATCCCGGTC CTGTCTCTTTCCTGCAGCAACATGGGATTCCCATCCCGGTC < 41bp 0.806980385644868 0.575070359622191 0.48099864 0.79995126 prediction 0.463820052045354 Functional Loss - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133346224 chr9:133346226 synonymous SNV . 0 23 hm5C_associated_SNPs_73767 2 0 1 0 2 ASS1 chr9:133346291 5'GT 133346291 Upstream 66bp
chr22 46501341 46501341 1 + G A rs77475556 46501338 + 46501318 46501358 41 GGGTGGTGCCGGGTGGACCCCACGGTGGCCTGTGTTCGCCA GGGTGGTGCCGGGTGGACCCCACAGTGGCCTGTGTTCGCCA < 41bp 0.776995004847464 0.545089646980239 0.5067089 0.324457 prediction 0.463810715734449 Functional Loss - MIRLET7BHG ENSG00000197182 CDS Human lincRNA chr22:46501338 chr22:46501341 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_73770 0 0 0 0 1 MIRLET7BHG chr22:46501289 3'AG 46501289 Downstream 53bp
chr16 8858626 8858626 1 + C T UCEC 8858624 + 8858604 8858644 41 AAAGGGATGTCCCAGCTCATCACCATGGCCTGCGGCTCCTG AAAGGGATGTCCCAGCTCATCATCATGGCCTGCGGCTCCTG < 41bp 0.852283294427136 0.620378113504327 0.10376182 0.12528619 prediction 0.463810361845619 Functional Loss - ABAT ENSG00000183044 CDS Human protein_coding chr16:8858624 chr16:8858626 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_73771 0 0 1 0 2 ABAT chr16:8858595 3'AG 8858595 Downstream 32bp
chr16 8858626 8858626 1 + C T UCEC 8858624 + 8858604 8858644 41 AAAGGGATGTCCCAGCTCATCACCATGGCCTGCGGCTCCTG AAAGGGATGTCCCAGCTCATCATCATGGCCTGCGGCTCCTG < 41bp 0.852283294427136 0.620378113504327 0.10376182 0.12528619 prediction 0.463810361845619 Functional Loss - ABAT ENSG00000183044 CDS Human protein_coding chr16:8858624 chr16:8858626 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_73771 0 0 1 0 2 ABAT chr16:8858687 5'GT 8858687 Upstream 62bp
chr19 15122128 15122128 1 + G T UCEC 15122126 + 15122106 15122146 41 CAGCGCGAGGTCACCGACCACAGGCTCAGCGAAGTGCGCAA CAGCGCGAGGTCACCGACCACATGCTCAGCGAAGTGCGCAA < 41bp 0.731903365282619 0.36805643787291 0.34119368 0.1264795 prediction 0.463806730565238 Functional Loss - CCDC105 ENSG00000160994 CDS Human protein_coding chr19:15122126 chr19:15122128 nonsynonymous SNV 0.739 0 23 hm5C_associated_SNPs_73773 0 0 0 0 1 CCDC105 chr19:15122207 5'GT 15122207 Upstream 80bp
chr12 6428018 6428018 1 + C T SKCM 6428016 + 6427996 6428036 41 CCCCTCTCATGCTGGAGAAGCTCGTGTGCCAACCCCTGCGA CCCCTCTCATGCTGGAGAAGCTTGTGTGCCAACCCCTGCGA < 41bp 0.731901210092603 0.455341105134679 0.1961644 0.1354506 prediction 0.463802420185205 Functional Loss - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6428016 chr12:6428018 synonymous SNV . 0 23 hm5C_associated_SNPs_73774 0 0 0 0 1 PLEKHG6 chr12:6428043 5'GT 6428043 Upstream 26bp
chr12 34178830 34178830 1 + A C rs77450248 34178826 + 34178806 34178846 41 AAGTATCCAGAGAGTCTTGTCAACATTAACACTAGCAGTAT AAGTATCCAGAGAGTCTTGTCAACCTTAACACTAGCAGTAT < 41bp 0.73189815616823 0.335731975809386 0.13091916 0.14000583 prediction 0.463796312336461 Functional Loss - ALG10 ENSG00000139133 CDS Human protein_coding chr12:34178826 chr12:34178830 synonymous SNV . 0 25 hm5C_associated_SNPs_73776 0 0 0 0 1 ALG10 chr12:34178798 3'AG 34178798 Downstream 33bp
chr7 5111780 5111780 1 + G C rs575217983 5111776 + 5111756 5111796 41 GTCCGAGCTCCAGGGCAGCTCTGGGGCAGAACTGTCCGGAT GTCCGAGCTCCAGGGCAGCTCTGGCGCAGAACTGTCCGGAT < 41bp 0.731887546132742 0.478372445404601 0.82755166 0.36269647 prediction 0.463775092265485 Functional Loss - RBAKDN ENSG00000273313 ncRNA_exonic Human lincRNA chr7:5111776 chr7:5111780 . . 0 25 hm5C_associated_SNPs_73778 0 0 0 0 1 RBAKDN chr7:5111831 5'GT 5111831 Upstream 52bp
chr19 40480518 40480518 1 + C T LGG 40480516 + 40480496 40480536 41 GAGGCCGTGGAGCTCCCGCTCACGCATTTCGAGCTCTACAA GAGGCCGTGGAGCTCCCGCTCATGCATTTCGAGCTCTACAA < 41bp 0.816177627479855 0.584291410681179 0.3660419 0.7487923 prediction 0.463772433597352 Functional Loss - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40480516 chr19:40480518 nonsynonymous SNV 0.039 5 23 hm5C_associated_SNPs_73779 0 0 1 0 2 PSMC4 chr19:40480431 3'AG 40480431 Downstream 88bp
chr19 40480518 40480518 1 + C T LGG 40480516 + 40480496 40480536 41 GAGGCCGTGGAGCTCCCGCTCACGCATTTCGAGCTCTACAA GAGGCCGTGGAGCTCCCGCTCATGCATTTCGAGCTCTACAA < 41bp 0.816177627479855 0.584291410681179 0.3660419 0.7487923 prediction 0.463772433597352 Functional Loss - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40480516 chr19:40480518 nonsynonymous SNV 0.039 5 23 hm5C_associated_SNPs_73779 0 0 1 0 2 PSMC4 chr19:40480540 5'GT 40480540 Upstream 23bp
chr19 43859892 43859892 1 + G A SKCM 43859889 + 43859869 43859909 41 ACAACAGAAGAGATCTGCCCCAAGGGGACCACACACTGTTA ACAACAGAAGAGATCTGCCCCAAAGGGACCACACACTGTTA < 41bp 0.762873386248952 0.530987889428152 0.5071502 0.13133538 prediction 0.463770993641599 Functional Loss - CD177 ENSG00000204936 CDS Human protein_coding chr19:43859889 chr19:43859892 synonymous SNV . 0 24 hm5C_associated_SNPs_73780 0 0 0 0 2 CD177 chr19:43859813 3'AG 43859813 Downstream 80bp
chr19 43859892 43859892 1 + G A SKCM 43859889 + 43859869 43859909 41 ACAACAGAAGAGATCTGCCCCAAGGGGACCACACACTGTTA ACAACAGAAGAGATCTGCCCCAAAGGGACCACACACTGTTA < 41bp 0.762873386248952 0.530987889428152 0.5071502 0.13133538 prediction 0.463770993641599 Functional Loss - CD177 ENSG00000204936 CDS Human protein_coding chr19:43859889 chr19:43859892 synonymous SNV . 0 24 hm5C_associated_SNPs_73780 0 0 0 0 2 CD177 chr19:43859935 5'GT 43859935 Upstream 44bp
chr12 49690007 49690007 1 + G A STAD 49690004 + 49689984 49690024 41 GGGAGGACGCGGAGCACAACCTCGTGCTCTTCCGCAAGGTG GGGAGGACGCGGAGCACAACCTCATGCTCTTCCGCAAGGTG < 41bp 0.778663807023479 0.546779716805366 0.38131705 0.24825051 prediction 0.463768180436227 Functional Loss - PRPH ENSG00000135406 CDS Human protein_coding chr12:49690004 chr12:49690007 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_73782 0 0 0 0 2 PRPH chr12:49689961 3'AG 49689961 Downstream 47bp
chr12 49690007 49690007 1 + G A STAD 49690004 + 49689984 49690024 41 GGGAGGACGCGGAGCACAACCTCGTGCTCTTCCGCAAGGTG GGGAGGACGCGGAGCACAACCTCATGCTCTTCCGCAAGGTG < 41bp 0.778663807023479 0.546779716805366 0.38131705 0.24825051 prediction 0.463768180436227 Functional Loss - PRPH ENSG00000135406 CDS Human protein_coding chr12:49690004 chr12:49690007 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_73782 0 0 0 0 2 PRPH chr12:49690021 5'GT 49690021 Upstream 15bp
chr3 156192555 156192555 1 + G T PRAD 156192552 + 156192532 156192572 41 GCTCCCTCCAGAGGCTGCAGCTCGAGTATGTGGATGTGGTC GCTCCCTCCAGAGGCTGCAGCTCTAGTATGTGGATGTGGTC < 41bp 0.731878517034832 0.354770149949915 0.1423777 0.3027894 prediction 0.463757034069665 Functional Loss - KCNAB1 ENSG00000169282 CDS Human protein_coding chr3:156192552 chr3:156192555 stopgain 0.850 1 24 hm5C_associated_SNPs_73784 0 0 0 0 2 KCNAB1 chr3:156192523 3'AG 156192523 Downstream 33bp
chr3 156192555 156192555 1 + G T PRAD 156192552 + 156192532 156192572 41 GCTCCCTCCAGAGGCTGCAGCTCGAGTATGTGGATGTGGTC GCTCCCTCCAGAGGCTGCAGCTCTAGTATGTGGATGTGGTC < 41bp 0.731878517034832 0.354770149949915 0.1423777 0.3027894 prediction 0.463757034069665 Functional Loss - KCNAB1 ENSG00000169282 CDS Human protein_coding chr3:156192552 chr3:156192555 stopgain 0.850 1 24 hm5C_associated_SNPs_73784 0 0 0 0 2 KCNAB1 chr3:156192609 5'GT 156192609 Upstream 55bp
chr2 65245340 65245340 1 + G A UCEC 65245337 + 65245317 65245357 41 GCCATCTTCCAGTGTGTGGCCGCGGTGTTCATTGCGCAACT GCCATCTTCCAGTGTGTGGCCGCAGTGTTCATTGCGCAACT < 41bp 0.731875598555223 0.493122257260584 0.80373585 0.7038427 prediction 0.463751197110447 Functional Loss - SLC1A4 ENSG00000115902 CDS Human protein_coding chr2:65245337 chr2:65245340 synonymous SNV . 0 24 hm5C_associated_SNPs_73787 0 0 1 0 1 SLC1A4 chr2:65245399 5'GT 65245399 Upstream 60bp
chr8 145095281 145095281 1 + G A LUAD 145095278 + 145095258 145095298 41 CCTGGTCCTGCCAGAGGCCCCAAGGCTGCGGCTGGCTGAGC CCTGGTCCTGCCAGAGGCCCCAAAGCTGCGGCTGGCTGAGC < 41bp 0.783978931976184 0.552106490923364 0.90671897 0.36427718 prediction 0.46374488210564 Functional Loss - SPATC1 ENSG00000186583 CDS Human protein_coding chr8:145095278 chr8:145095281 nonsynonymous SNV 0.014 3 24 hm5C_associated_SNPs_73789 0 0 0 0 1 SPATC1 chr8:145095364 5'GT 145095364 Upstream 84bp
chr4 113350374 113350374 1 + A C UCEC 113350370 + 113350350 113350390 41 GCCTGCAAGCTGGCAGCTGCCTTCAGTGCCTATACGCCGCT GCCTGCAAGCTGGCAGCTGCCTTCCGTGCCTATACGCCGCT < 41bp 0.731864421187513 0.298411609858704 0.14388767 0.038136035 prediction 0.463728842375026 Functional Loss - ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113350370 chr4:113350374 nonsynonymous SNV 0.977 3 25 hm5C_associated_SNPs_73793 0 0 0 0 2 ALPK1 chr4:113350305 3'AG 113350305 Downstream 70bp
chr4 113350374 113350374 1 + A C UCEC 113350370 + 113350350 113350390 41 GCCTGCAAGCTGGCAGCTGCCTTCAGTGCCTATACGCCGCT GCCTGCAAGCTGGCAGCTGCCTTCCGTGCCTATACGCCGCT < 41bp 0.731864421187513 0.298411609858704 0.14388767 0.038136035 prediction 0.463728842375026 Functional Loss - ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113350370 chr4:113350374 nonsynonymous SNV 0.977 3 25 hm5C_associated_SNPs_73793 0 0 0 0 2 ALPK1 chr4:113350409 5'GT 113350409 Upstream 36bp
chr11 64854058 64854058 1 + G A STAD 64854055 + 64854035 64854075 41 GCTGGCCACAGTCAACTGGGCCCGGGCAGGACTGGGCCTCC GCTGGCCACAGTCAACTGGGCCCAGGCAGGACTGGGCCTCC < 41bp 0.765334443674767 0.533471328930919 0.22603673 0.15891275 prediction 0.463726229487695 Functional Loss - ZFPL1 ENSG00000162300 CDS Human protein_coding chr11:64854055 chr11:64854058 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_73795 0 0 1 0 1 ZFPL1 chr11:64854080 5'GT 64854080 Upstream 23bp
chr8 2017574 2017574 1 + G A LUAD 2017571 + 2017551 2017591 41 TTTGCTGTCTTGCAGGGTTCCGGGGAGACGAGGAACCATTC TTTGCTGTCTTGCAGGGTTCCGGAGAGACGAGGAACCATTC < 41bp 0.737400207513118 0.505539758581174 0.92855084 0.9137639 prediction 0.463720897863887 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2017571 chr8:2017574 nonsynonymous SNV 0.021 1 24 hm5C_associated_SNPs_73798 0 0 0 0 1 MYOM2 chr8:2017616 5'GT 2017616 Upstream 43bp
chr20 44463645 44463645 1 + C T PAAD 44463643 + 44463623 44463663 41 GTGGGGCAGTCAGCTCCTGGCGCGGCAGCTGCAGGATTTCT GTGGGGCAGTCAGCTCCTGGCGTGGCAGCTGCAGGATTTCT < 41bp 0.735126434272804 0.503266736508163 0.468331 0.43177754 prediction 0.463719395529281 Functional Loss - SNX21 ENSG00000124104 CDS Human protein_coding chr20:44463643 chr20:44463645 nonsynonymous SNV 0.009 3 23 hm5C_associated_SNPs_73799 0 0 1 0 1 SNX21 chr20:44463598 3'AG 44463598 Downstream 48bp
chr1 1459243 1459243 1 + G A rs573924414 1459240 + 1459220 1459260 41 CCAGCCTGGAAGCACGGGTGCGCGACATCGCCATAGCAACA CCAGCCTGGAAGCACGGGTGCGCAACATCGCCATAGCAACA < 41bp 0.764922901141656 0.533066438043075 0.39659703 0.14831993 prediction 0.463712926197162 Functional Loss - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1459240 chr1:1459243 nonsynonymous SNV 0.003 2 24 hm5C_associated_SNPs_73800 0 0 1 0 1 ATAD3A chr1:1459219 3'AG 1459219 Downstream 25bp
chr16 81934325 81934325 1 + G A UCEC 81934322 + 81934302 81934342 41 GACCTGCTGTTGACGAAGCCCACGGAGGCCAGTGCTGACCA GACCTGCTGTTGACGAAGCCCACAGAGGCCAGTGCTGACCA < 41bp 0.77164465031722 0.53979030028241 0.26087624 0.09300965 prediction 0.46370870006962 Functional Loss - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81934322 chr16:81934325 synonymous SNV . 0 24 hm5C_associated_SNPs_73803 0 0 0 0 1 PLCG2 chr16:81934385 5'GT 81934385 Upstream 61bp
chr17 79078359 79078359 1 + T C STAD 79078358 + 79078338 79078378 41 CGAGCTCCATGGCAGCCGGCCTGGAGCGCAATGGCCGTATG CGAGCTCCATGGCAGCCGGCCCGGAGCGCAATGGCCGTATG < 41bp 0.78868104780476 0.556828845731735 0.4621145 0.4087779 prediction 0.463704404146049 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79078358 chr17:79078359 nonsynonymous SNV 0.214 3 22 hm5C_associated_SNPs_73805 0 0 1 0 2 BAIAP2 chr17:79078311 3'AG 79078311 Downstream 49bp
chr17 79078359 79078359 1 + T C STAD 79078358 + 79078338 79078378 41 CGAGCTCCATGGCAGCCGGCCTGGAGCGCAATGGCCGTATG CGAGCTCCATGGCAGCCGGCCCGGAGCGCAATGGCCGTATG < 41bp 0.78868104780476 0.556828845731735 0.4621145 0.4087779 prediction 0.463704404146049 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79078358 chr17:79078359 nonsynonymous SNV 0.214 3 22 hm5C_associated_SNPs_73805 0 0 1 0 2 BAIAP2 chr17:79078314 3'AG 79078314 Downstream 46bp
chr9 33798597 33798597 1 + G A SKCM 33798594 + 33798574 33798614 41 GCATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCC GCATGTTCTGTGTGGGCTTCCTTAAGGGAGGCAAGGATTCC < 41bp 0.731851861082788 0.494823833324311 0.18840995 0.15598822 prediction 0.463703722165575 Functional Loss - PRSS3 ENSG00000010438 CDS Human protein_coding chr9:33798594 chr9:33798597 nonsynonymous SNV 0.552 2 24 hm5C_associated_SNPs_73806 0 0 0 0 1 PRSS3 chr9:33798620 5'GT 33798620 Upstream 24bp
chr2 197595663 197595663 1 + A C LIHC 197595662 + 197595642 197595682 41 GAAAGAAGCCAGTGTGGAATCAGAACAGGTGAGCCAGACCC GAAAGAAGCCAGTGTGGAATCCGAACAGGTGAGCCAGACCC < 41bp 0.773965809501702 0.542116891199647 0.47030857 0.3280644 prediction 0.46369783660411 Functional Loss - CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197595662 chr2:197595663 synonymous SNV . 0 22 hm5C_associated_SNPs_73807 0 0 1 0 2 CCDC150 chr2:197595583 3'AG 197595583 Downstream 81bp
chr2 197595663 197595663 1 + A C LIHC 197595662 + 197595642 197595682 41 GAAAGAAGCCAGTGTGGAATCAGAACAGGTGAGCCAGACCC GAAAGAAGCCAGTGTGGAATCCGAACAGGTGAGCCAGACCC < 41bp 0.773965809501702 0.542116891199647 0.47030857 0.3280644 prediction 0.46369783660411 Functional Loss - CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197595662 chr2:197595663 synonymous SNV . 0 22 hm5C_associated_SNPs_73807 0 0 1 0 2 CCDC150 chr2:197595669 5'GT 197595669 Upstream 7bp
chr7 75034350 75034350 1 + T C rs139338132 75034349 + 75034329 75034369 41 GAGGACCACCATGAGTTCATCTGGGTGAGTGGACAGGGAGG GAGGACCACCATGAGTTCATCCGGGTGAGTGGACAGGGAGG < 41bp 0.731845000687461 0.498536641215398 0.6970443 0.8844857 prediction 0.463690001374923 Functional Loss - TRIM73 ENSG00000178809 CDS Human protein_coding chr7:75034349 chr7:75034350 nonsynonymous SNV 0.695 0 22 hm5C_associated_SNPs_73811 0 0 0 0 1 TRIM73 chr7:75034352 5'GT 75034352 Upstream 3bp
chr6 36179264 36179264 1 + A C STAD 36179263 + 36179243 36179283 41 AGTATCCAATGGGGAGCTGCCAGCAGGGCCCCAGGGGGATG AGTATCCAATGGGGAGCTGCCCGCAGGGCCCCAGGGGGATG < 41bp 0.804099933440065 0.572262035752533 0.29214716 0.07742584 prediction 0.463675795375063 Functional Loss - BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36179263 chr6:36179264 synonymous SNV . 0 22 hm5C_associated_SNPs_73815 0 0 1 0 1 BRPF3 chr6:36179337 5'GT 36179337 Upstream 74bp
chr12 113871944 113871944 1 + G A rs200347609 113871941 + 113871921 113871961 41 CCCTTGGTTTCTCTGTAGGTCTGGGACGAGGCCAATCTGAG CCCTTGGTTTCTCTGTAGGTCTGAGACGAGGCCAATCTGAG < 41bp 0.731834036418826 0.485385175534843 0.31343663 0.18132186 prediction 0.463668072837653 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113871941 chr12:113871944 stopgain 0.981 1 24 hm5C_associated_SNPs_73817 0 0 0 0 2 SDSL chr12:113871939 3'AG 113871939 Downstream 6bp
chr12 113871944 113871944 1 + G A rs200347609 113871941 + 113871921 113871961 41 CCCTTGGTTTCTCTGTAGGTCTGGGACGAGGCCAATCTGAG CCCTTGGTTTCTCTGTAGGTCTGAGACGAGGCCAATCTGAG < 41bp 0.731834036418826 0.485385175534843 0.31343663 0.18132186 prediction 0.463668072837653 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113871941 chr12:113871944 stopgain 0.981 1 24 hm5C_associated_SNPs_73817 0 0 0 0 2 SDSL chr12:113872027 5'GT 113872027 Upstream 84bp
chr5 149391886 149391886 1 + G A UCEC 149391883 + 149391863 149391903 41 ATGTTGCCTCTGCCTGCCTACTCGGTTGTGGAGAACCCCAC ATGTTGCCTCTGCCTGCCTACTCAGTTGTGGAGAACCCCAC < 41bp 0.762397828976044 0.530569544481946 0.06813455 0.0786733 prediction 0.463656568988195 Functional Loss - HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149391883 chr5:149391886 synonymous SNV . 0 24 hm5C_associated_SNPs_73820 0 0 1 0 2 HMGXB3 chr5:149391818 3'AG 149391818 Downstream 69bp
chr5 149391886 149391886 1 + G A UCEC 149391883 + 149391863 149391903 41 ATGTTGCCTCTGCCTGCCTACTCGGTTGTGGAGAACCCCAC ATGTTGCCTCTGCCTGCCTACTCAGTTGTGGAGAACCCCAC < 41bp 0.762397828976044 0.530569544481946 0.06813455 0.0786733 prediction 0.463656568988195 Functional Loss - HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149391883 chr5:149391886 synonymous SNV . 0 24 hm5C_associated_SNPs_73820 0 0 1 0 2 HMGXB3 chr5:149391916 5'GT 149391916 Upstream 31bp
chr1 222903028 222903028 1 + C T TGCT 222903025 + 222903005 222903045 41 GCGGTGAAGCAATCAGGTCTCTCCAAGAAGCAGAAAAATGT GCGGTGAAGCAATCAGGTCTCTCTAAGAAGCAGAAAAATGT < 41bp 0.748058261533661 0.516232549298298 0.9365095 0.8828549 prediction 0.463651424470725 Functional Loss - BROX ENSG00000162819 CDS Human protein_coding chr1:222903025 chr1:222903028 stopgain 1.000 1 24 hm5C_associated_SNPs_73821 0 0 1 0 2 BROX chr1:222902962 3'AG 222902962 Downstream 67bp
chr1 222903028 222903028 1 + C T TGCT 222903025 + 222903005 222903045 41 GCGGTGAAGCAATCAGGTCTCTCCAAGAAGCAGAAAAATGT GCGGTGAAGCAATCAGGTCTCTCTAAGAAGCAGAAAAATGT < 41bp 0.748058261533661 0.516232549298298 0.9365095 0.8828549 prediction 0.463651424470725 Functional Loss - BROX ENSG00000162819 CDS Human protein_coding chr1:222903025 chr1:222903028 stopgain 1.000 1 24 hm5C_associated_SNPs_73821 0 0 1 0 2 BROX chr1:222903043 5'GT 222903043 Upstream 16bp
chr11 77911266 77911266 1 + G A COAD 77911263 + 77911243 77911283 41 TCCTGACCTTCCAGCACTCCCACGAAGCCTTCCACCTGGTA TCCTGACCTTCCAGCACTCCCACAAAGCCTTCCACCTGGTA < 41bp 0.772815705862899 0.540991592005805 0.110129744 0.021321058 prediction 0.463648227714187 Functional Loss - USP35 ENSG00000118369 CDS Human protein_coding chr11:77911263 chr11:77911266 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_73822 0 0 0 0 2 USP35 chr11:77911179 3'AG 77911179 Downstream 88bp
chr11 77911266 77911266 1 + G A COAD 77911263 + 77911243 77911283 41 TCCTGACCTTCCAGCACTCCCACGAAGCCTTCCACCTGGTA TCCTGACCTTCCAGCACTCCCACAAAGCCTTCCACCTGGTA < 41bp 0.772815705862899 0.540991592005805 0.110129744 0.021321058 prediction 0.463648227714187 Functional Loss - USP35 ENSG00000118369 CDS Human protein_coding chr11:77911263 chr11:77911266 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_73822 0 0 0 0 2 USP35 chr11:77911280 5'GT 77911280 Upstream 15bp
chr21 43710302 43710302 1 + C T UCEC 43710300 + 43710280 43710320 41 TCCATGCTGTTCCTCATGTTCGCGGCCCTCATGCCTACTGT TCCATGCTGTTCCTCATGTTCGTGGCCCTCATGCCTACTGT < 41bp 0.821371557312308 0.589548777775057 0.7287799 0.87853456 prediction 0.463645559074504 Functional Loss - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43710300 chr21:43710302 nonsynonymous SNV 0.571 2 23 hm5C_associated_SNPs_73823 0 0 0 0 1 ABCG1 chr21:43710328 5'GT 43710328 Upstream 27bp
chr11 123493258 123493258 1 + C T COAD 123493256 + 123493236 123493276 41 TTCAGAACGGCATCAGGTCCCGCGACTACACGTCGGAAAGT TTCAGAACGGCATCAGGTCCCGTGACTACACGTCGGAAAGT < 41bp 0.833148285838646 0.601326612927152 0.3650929 0.33113807 prediction 0.463643345822987 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123493256 chr11:123493258 synonymous SNV . 0 23 hm5C_associated_SNPs_73824 0 0 1 0 1 GRAMD1B chr11:123493214 3'AG 123493214 Downstream 45bp
chr18 29797785 29797785 1 + C T rs200254969 29797783 + 29797763 29797803 41 GTGTGAAAAGAGAGGCTCCACCCGAGACACCATAGTCATTG GTGTGAAAAGAGAGGCTCCACCTGAGACACCATAGTCATTG < 41bp 0.834272285962528 0.602451927883677 0.04180637 0.032021463 prediction 0.463640716157702 Functional Loss - MEP1B ENSG00000141434 CDS Human protein_coding chr18:29797783 chr18:29797785 stopgain 0.344 0 23 hm5C_associated_SNPs_73826 0 0 1 0 1 MEP1B chr18:29797724 3'AG 29797724 Downstream 62bp
chr5 38418314 38418314 1 + G A SKCM 38418311 + 38418291 38418331 41 GTGAATGGGAGGAGAATTGACATGAGGCCCTGGCCCCTGGG GTGAATGGGAGGAGAATTGACATAAGGCCCTGGCCCCTGGG < 41bp 0.758284495931716 0.526466590648 0.35915354 0.25538313 prediction 0.463635810567432 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38418311 chr5:38418314 nonsynonymous SNV 0.980 0 24 hm5C_associated_SNPs_73827 0 0 0 0 1 EGFLAM chr5:38418357 5'GT 38418357 Upstream 44bp
chr1 1222499 1222499 1 + C T UCEC 1222497 + 1222477 1222517 41 CCCCTCTCCCAGTGCAACAGCACGGGCGGCGACTGCTTTTA CCCCTCTCCCAGTGCAACAGCATGGGCGGCGACTGCTTTTA < 41bp 0.770844387291782 0.53902748831083 0.35755578 0.4669427 prediction 0.463633797961905 Functional Loss - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1222497 chr1:1222499 nonsynonymous SNV 0.141 3 23 hm5C_associated_SNPs_73828 0 0 0 0 1 SCNN1D chr1:1222489 3'AG 1222489 Downstream 11bp
chr9 135929329 135929329 1 + G A UCEC 135929326 + 135929306 135929346 41 GAATCCGTTGTGGAATGAAACACGGTAAAAATTCCTGAAAG GAATCCGTTGTGGAATGAAACACAGTAAAAATTCCTGAAAG < 41bp 0.748892484953332 0.517082231420113 0.9388539 0.78508186 prediction 0.463620507066438 Functional Loss - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135929326 chr9:135929329 nonsynonymous SNV 0.901 3 24 hm5C_associated_SNPs_73831 0 0 1 0 1 GTF3C5 chr9:135929329 5'GT 135929329 Upstream 1bp
chr2 28849305 28849305 1 + T C rs542778289 28849304 + 28849284 28849324 41 TGTCCCCTCAGGACATCAACCTGGAGAAAGACTGGAAGCTG TGTCCCCTCAGGACATCAACCCGGAGAAAGACTGGAAGCTG < 41bp 0.763744689860721 0.531935168956336 0.2390537 0.920359 prediction 0.46361904180877 Functional Loss - PLB1 ENSG00000163803 CDS Human protein_coding chr2:28849304 chr2:28849305 nonsynonymous SNV 0.714 1 22 hm5C_associated_SNPs_73832 0 0 0 0 2 PLB1 chr2:28849295 3'AG 28849295 Downstream 11bp
chr2 28849305 28849305 1 + T C rs542778289 28849304 + 28849284 28849324 41 TGTCCCCTCAGGACATCAACCTGGAGAAAGACTGGAAGCTG TGTCCCCTCAGGACATCAACCCGGAGAAAGACTGGAAGCTG < 41bp 0.763744689860721 0.531935168956336 0.2390537 0.920359 prediction 0.46361904180877 Functional Loss - PLB1 ENSG00000163803 CDS Human protein_coding chr2:28849304 chr2:28849305 nonsynonymous SNV 0.714 1 22 hm5C_associated_SNPs_73832 0 0 0 0 2 PLB1 chr2:28849375 5'GT 28849375 Upstream 71bp
chr16 4383520 4383520 1 + G A STAD 4383517 + 4383497 4383537 41 CTGCCTCCAGTGCCCAGTGCCTCGGTAAGGAGGGGTGAGAG CTGCCTCCAGTGCCCAGTGCCTCAGTAAGGAGGGGTGAGAG < 41bp 0.752463357176924 0.520656436933607 0.15305585 0.10091469 prediction 0.463613840486634 Functional Loss - GLIS2 ENSG00000126603 CDS Human protein_coding chr16:4383517 chr16:4383520 synonymous SNV . 0 24 hm5C_associated_SNPs_73835 0 0 0 0 1 GLIS2 chr16:4383520 5'GT 4383520 Upstream 1bp
chr16 2257280 2257280 1 + C T STAD 2257278 + 2257258 2257298 41 ACGAGCAGCTGATCCCTGAGCCCGAGGTCTCCATCACGTCC ACGAGCAGCTGATCCCTGAGCCTGAGGTCTCCATCACGTCC < 41bp 0.731806209628809 0.462325846946399 0.10036805 0.07875803 prediction 0.463612419257618 Functional Loss - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2257278 chr16:2257280 synonymous SNV . 0 23 hm5C_associated_SNPs_73837 0 0 1 1 2 MLST8 chr16:2257194 3'AG 2257194 Downstream 87bp
chr16 2257280 2257280 1 + C T STAD 2257278 + 2257258 2257298 41 ACGAGCAGCTGATCCCTGAGCCCGAGGTCTCCATCACGTCC ACGAGCAGCTGATCCCTGAGCCTGAGGTCTCCATCACGTCC < 41bp 0.731806209628809 0.462325846946399 0.10036805 0.07875803 prediction 0.463612419257618 Functional Loss - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2257278 chr16:2257280 synonymous SNV . 0 23 hm5C_associated_SNPs_73837 0 0 1 1 2 MLST8 chr16:2257346 5'GT 2257346 Upstream 67bp
chr14 100795134 100795134 1 + G T SARC 100795132 + 100795112 100795152 41 AGACACAGGCGCAGAAGCAGCAGCGGCGGCTTTCGGCCTCG AGACACAGGCGCAGAAGCAGCATCGGCGGCTTTCGGCCTCG < 41bp 0.82566915364382 0.59386704345332 0.7961341 0.3935768 prediction 0.463604220380999 Functional Loss - SLC25A47 ENSG00000140107 CDS Human protein_coding chr14:100795132 chr14:100795134 nonsynonymous SNV 0.954 1 23 hm5C_associated_SNPs_73838 0 0 0 0 1 SLC25A47 chr14:100795063 3'AG 100795063 Downstream 72bp
chr4 100756882 100756882 1 + G C STAD 100756878 + 100756858 100756898 41 GAGGGACAGCAATGAGACCACCGGGCTGTACTCTCTCTCTG GAGGGACAGCAATGAGACCACCGGCCTGTACTCTCTCTCTG < 41bp 0.860882489972566 0.629082264696921 0.44404685 0.12634528 prediction 0.463600450551291 Functional Loss - DAPP1 ENSG00000070190 CDS Human protein_coding chr4:100756878 chr4:100756882 synonymous SNV . 0 25 hm5C_associated_SNPs_73842 0 0 0 0 1 DAPP1 chr4:100756902 5'GT 100756902 Upstream 21bp
chr1 206666428 206666428 1 + G T UCEC 206666426 + 206666406 206666446 41 CTGCCTGTAACACAGAAGCCCAGGGGGTCCAGGAGAGTCTC CTGCCTGTAACACAGAAGCCCATGGGGTCCAGGAGAGTCTC < 41bp 0.731799910647247 0.365191858415472 0.8799963 0.28279433 prediction 0.463599821294495 Functional Loss - IKBKE ENSG00000143466 CDS Human other chr1:206666426 chr1:206666428 nonsynonymous SNV 0.981 0 23 hm5C_associated_SNPs_73844 0 0 0 0 1 IKBKE chr1:206666452 5'GT 206666452 Upstream 25bp
chr17 16285701 16285701 1 + G T LUAD 16285698 + 16285678 16285718 41 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCAC ATGCAGATCTTCGTGAAGACCCTTACCGGCAAGACCATCAC < 41bp 0.731798801451006 0.340079325967979 0.2405546 0.26177287 prediction 0.463597602902012 Functional Loss - UBB ENSG00000170315 CDS Human protein_coding chr17:16285698 chr17:16285701 synonymous SNV . 0 24 hm5C_associated_SNPs_73845 0 0 1 0 1 UBB chr17:16285673 3'AG 16285673 Downstream 29bp
chr11 20648311 20648311 1 + G A SKCM 20648308 + 20648288 20648328 41 TACTCGTGATCCTCCTCATCCGAGGAGTCACCCTGCCTGGA TACTCGTGATCCTCCTCATCCGAAGAGTCACCCTGCCTGGA < 41bp 0.798451000747985 0.566654358817638 0.92465496 0.5284103 prediction 0.463593283860694 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20648308 chr11:20648311 nonsynonymous SNV 0.977 4 24 hm5C_associated_SNPs_73846 0 0 0 0 2 SLC6A5 chr11:20648254 3'AG 20648254 Downstream 58bp
chr11 20648311 20648311 1 + G A SKCM 20648308 + 20648288 20648328 41 TACTCGTGATCCTCCTCATCCGAGGAGTCACCCTGCCTGGA TACTCGTGATCCTCCTCATCCGAAGAGTCACCCTGCCTGGA < 41bp 0.798451000747985 0.566654358817638 0.92465496 0.5284103 prediction 0.463593283860694 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20648308 chr11:20648311 nonsynonymous SNV 0.977 4 24 hm5C_associated_SNPs_73846 0 0 0 0 2 SLC6A5 chr11:20648388 5'GT 20648388 Upstream 78bp
chr6 39846221 39846221 1 + G A SKCM 39846218 + 39846198 39846238 41 GCCGTCTGGAGAGGAAGGAGCGGGAATGCGAGACAAAGACA GCCGTCTGGAGAGGAAGGAGCGGAAATGCGAGACAAAGACA < 41bp 0.778347061867709 0.546562077666095 0.87061703 0.8609532 prediction 0.463569968403229 Functional Loss - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39846218 chr6:39846221 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_73856 0 0 0 0 1 DAAM2 chr6:39846180 3'AG 39846180 Downstream 42bp
chr8 21958395 21958395 1 + G A HNSC 21958392 + 21958372 21958412 41 CCTACTTCACCGACAGCTTCCTGGATTCCGGCTTTCAAACT CCTACTTCACCGACAGCTTCCTGAATTCCGGCTTTCAAACT < 41bp 0.759460082003748 0.527675815117968 0.043862462 0.0188964 prediction 0.46356853377156 Functional Loss - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21958392 chr8:21958395 nonsynonymous SNV 0.014 0 24 hm5C_associated_SNPs_73857 0 0 1 0 2 FAM160B2 chr8:21958355 3'AG 21958355 Downstream 41bp
chr8 21958395 21958395 1 + G A HNSC 21958392 + 21958372 21958412 41 CCTACTTCACCGACAGCTTCCTGGATTCCGGCTTTCAAACT CCTACTTCACCGACAGCTTCCTGAATTCCGGCTTTCAAACT < 41bp 0.759460082003748 0.527675815117968 0.043862462 0.0188964 prediction 0.46356853377156 Functional Loss - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21958392 chr8:21958395 nonsynonymous SNV 0.014 0 24 hm5C_associated_SNPs_73857 0 0 1 0 2 FAM160B2 chr8:21958483 5'GT 21958483 Upstream 89bp
chr3 127396377 127396377 1 + G A SKCM 127396374 + 127396354 127396394 41 GCTGCCCTGACATCTGCTTCCGAGTGGCTGGCTGCAGCTTC GCTGCCCTGACATCTGCTTCCGAATGGCTGGCTGCAGCTTC < 41bp 0.762531743476341 0.530753032484326 0.7381835 0.3156319 prediction 0.46355742198403 Functional Loss - ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127396374 chr3:127396377 nonsynonymous SNV 0.848 4 24 hm5C_associated_SNPs_73858 0 0 1 0 1 ABTB1 chr3:127396406 5'GT 127396406 Upstream 30bp
chr8 74893475 74893475 1 + A C HNSC 74893471 + 74893451 74893491 41 TACACAAAATAATGCTATTTCTGAAAGTGTGCCTCTGCCTA TACACAAAATAATGCTATTTCTGACAGTGTGCCTCTGCCTA < 41bp 0.731776391046216 0.336357718805756 0.15263885 0.036432803 prediction 0.463552782092431 Functional Loss - TMEM70 ENSG00000175606 CDS Human protein_coding chr8:74893471 chr8:74893475 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_73859 0 0 1 0 1 TMEM70 chr8:74893390 3'AG 74893390 Downstream 86bp
chr21 46640924 46640924 1 + G A ACC 46640921 + 46640901 46640941 41 ACTGTCGCTGGATGCGTGTGCACGGCAAGGTACTGAGGCGC ACTGTCGCTGGATGCGTGTGCACAGCAAGGTACTGAGGCGC < 41bp 0.742432100814014 0.510667546938966 0.73881483 0.2385265 prediction 0.463529107750096 Functional Loss - ADARB1 ENSG00000197381 CDS Human protein_coding chr21:46640921 chr21:46640924 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_73869 0 0 1 0 1 ADARB1 chr21:46640929 5'GT 46640929 Upstream 6bp
chr17 41006599 41006599 1 + G A PAAD 41006596 + 41006576 41006616 41 TGGAGGAGCAGGCCGCCTTCCTCGTGGGAAGCGCCACCCCT TGGAGGAGCAGGCCGCCTTCCTCATGGGAAGCGCCACCCCT < 41bp 0.786235042795975 0.554472444253236 0.118638724 0.07081795 prediction 0.463525197085477 Functional Loss - AOC3 ENSG00000131471 CDS Human protein_coding chr17:41006596 chr17:41006599 nonsynonymous SNV 0.010 0 24 hm5C_associated_SNPs_73870 0 0 1 0 1 AOC3 chr17:41006554 3'AG 41006554 Downstream 46bp
chr9 133269824 133269824 1 + C T rs185956698 133269822 + 133269802 133269842 41 CTACAGAGCTGTCGCTGACCCCCGGCGCCCCCATGGAGCTC CTACAGAGCTGTCGCTGACCCCTGGCGCCCCCATGGAGCTC < 41bp 0.73175544261712 0.495811514115535 0.11870918 0.08452386 prediction 0.463510885234241 Functional Loss - HMCN2 ENSG00000148357;ENSG00000215428 intergenic Human other chr9:133269822 chr9:133269824 . . 0 23 hm5C_associated_SNPs_73871 0 0 0 0 1 HMCN2 chr9:133269772 3'AG 133269772 Downstream 53bp
chr1 151506541 151506541 1 + G T LUAD 151506538 + 151506518 151506558 41 AGCTACTGGCCCAGCGACTGCAGGGGCTGGAGCAAGAGGCA AGCTACTGGCCCAGCGACTGCAGTGGCTGGAGCAAGAGGCA < 41bp 0.731750655607541 0.318898230543014 0.9047104 0.8664993 prediction 0.463501311215082 Functional Loss - CGN ENSG00000143375 CDS Human protein_coding chr1:151506538 chr1:151506541 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_73873 0 0 0 0 2 CGN chr1:151506451 3'AG 151506451 Downstream 91bp
chr1 151506541 151506541 1 + G T LUAD 151506538 + 151506518 151506558 41 AGCTACTGGCCCAGCGACTGCAGGGGCTGGAGCAAGAGGCA AGCTACTGGCCCAGCGACTGCAGTGGCTGGAGCAAGAGGCA < 41bp 0.731750655607541 0.318898230543014 0.9047104 0.8664993 prediction 0.463501311215082 Functional Loss - CGN ENSG00000143375 CDS Human protein_coding chr1:151506538 chr1:151506541 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_73873 0 0 0 0 2 CGN chr1:151506612 5'GT 151506612 Upstream 72bp
chr1 26527938 26527938 1 + T C COAD 26527937 + 26527917 26527957 41 GACGAGCGGGTCGTTGGAGACTACGTCATCCAAGGACATCC GACGAGCGGGTCGTTGGAGACCACGTCATCCAAGGACATCC < 41bp 0.731746886365444 0.484231969763189 0.35260534 0.28015938 prediction 0.463493772730887 Functional Loss - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26527937 chr1:26527938 synonymous SNV . 0 22 hm5C_associated_SNPs_73876 0 0 0 0 2 CATSPER4 chr1:26527845 3'AG 26527845 Downstream 94bp
chr1 26527938 26527938 1 + T C COAD 26527937 + 26527917 26527957 41 GACGAGCGGGTCGTTGGAGACTACGTCATCCAAGGACATCC GACGAGCGGGTCGTTGGAGACCACGTCATCCAAGGACATCC < 41bp 0.731746886365444 0.484231969763189 0.35260534 0.28015938 prediction 0.463493772730887 Functional Loss - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26527937 chr1:26527938 synonymous SNV . 0 22 hm5C_associated_SNPs_73876 0 0 0 0 2 CATSPER4 chr1:26528010 5'GT 26528010 Upstream 73bp
chr6 44116336 44116336 1 + A C LUSC 44116332 + 44116312 44116352 41 CCTCATCCTGCAGCGAGTCCCTGCACATCTCCAACTGGACC CCTCATCCTGCAGCGAGTCCCTGCCCATCTCCAACTGGACC < 41bp 0.731742883455616 0.299295161963335 0.013071775 0.00462389 prediction 0.463485766911233 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116332 chr6:44116336 nonsynonymous SNV 0.847 1 25 hm5C_associated_SNPs_73878 0 0 1 0 2 TMEM63B chr6:44116250 3'AG 44116250 Downstream 87bp
chr6 44116336 44116336 1 + A C LUSC 44116332 + 44116312 44116352 41 CCTCATCCTGCAGCGAGTCCCTGCACATCTCCAACTGGACC CCTCATCCTGCAGCGAGTCCCTGCCCATCTCCAACTGGACC < 41bp 0.731742883455616 0.299295161963335 0.013071775 0.00462389 prediction 0.463485766911233 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116332 chr6:44116336 nonsynonymous SNV 0.847 1 25 hm5C_associated_SNPs_73878 0 0 1 0 2 TMEM63B chr6:44116387 5'GT 44116387 Upstream 52bp
chr19 54395798 54395798 1 + G T SARC 54395796 + 54395776 54395816 41 GGGGATGTGGAGCGCCGGCTCAGCGTGGAGGTGTGGGACTG GGGGATGTGGAGCGCCGGCTCATCGTGGAGGTGTGGGACTG < 41bp 0.90398551260591 0.672243702787279 0.3476833 0.13375768 prediction 0.463483619637262 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54395796 chr19:54395798 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_73879 0 0 0 0 2 PRKCG chr19:54395763 3'AG 54395763 Downstream 36bp
chr19 54395798 54395798 1 + G T SARC 54395796 + 54395776 54395816 41 GGGGATGTGGAGCGCCGGCTCAGCGTGGAGGTGTGGGACTG GGGGATGTGGAGCGCCGGCTCATCGTGGAGGTGTGGGACTG < 41bp 0.90398551260591 0.672243702787279 0.3476833 0.13375768 prediction 0.463483619637262 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54395796 chr19:54395798 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_73879 0 0 0 0 2 PRKCG chr19:54395897 5'GT 54395897 Upstream 100bp
chrX 69502178 69502178 1 + G T HNSC 69502176 + 69502156 69502196 41 GCAAATCTAAACTCTTATTCCTGGGAGAGCAGAGCGGTGTG GCAAATCTAAACTCTTATTCCTTGGAGAGCAGAGCGGTGTG < 41bp 0.898130506542517 0.666393843499409 0.5650575 0.27759197 prediction 0.463473326086216 Functional Loss - RAB41 ENSG00000147127 CDS Human protein_coding chrX:69502176 chrX:69502178 synonymous SNV . 0 23 hm5C_associated_SNPs_73883 0 0 0 0 1 RAB41 chrX:69502191 5'GT 69502191 Upstream 14bp
chr1 207307917 207307917 1 + G A BLCA 207307914 + 207307894 207307934 41 AGGAGATGGCACGTGGAGTCCCCGAACACCATCATGTGGAG AGGAGATGGCACGTGGAGTCCCCAAACACCATCATGTGGAG < 41bp 0.750898772402901 0.5191630555842 0.18086591 0.5542276 prediction 0.463471433637402 Functional Loss - C4BPA ENSG00000123838 CDS Human protein_coding chr1:207307914 chr1:207307917 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_73884 0 0 1 0 1 C4BPA chr1:207307937 5'GT 207307937 Upstream 21bp
chr1 113058958 113058958 1 + G T PRAD 113058955 + 113058935 113058975 41 CACTACGGTGTCCGTTTTGCCAAGGCCTTCGTGGATGCCAA CACTACGGTGTCCGTTTTGCCAATGCCTTCGTGGATGCCAA < 41bp 0.731732136151423 0.331937861252987 0.46493128 0.048916996 prediction 0.463464272302846 Functional Loss - WNT2B ENSG00000134245 CDS Human protein_coding chr1:113058955 chr1:113058958 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_73887 0 0 0 0 1 WNT2B chr1:113059039 5'GT 113059039 Upstream 82bp
chr21 37775114 37775114 1 + G C LGG 37775110 + 37775090 37775130 41 TGAAGTCTTTCTTCCGTAGACTGAGTTTCACTCCCGACGGA TGAAGTCTTTCTTCCGTAGACTGACTTTCACTCCCGACGGA < 41bp 0.731731512793121 0.439330787475955 0.35343307 0.28244472 prediction 0.463463025586242 Functional Loss - CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37775110 chr21:37775114 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_73888 0 0 1 0 2 CHAF1B chr21:37775056 3'AG 37775056 Downstream 59bp
chr21 37775114 37775114 1 + G C LGG 37775110 + 37775090 37775130 41 TGAAGTCTTTCTTCCGTAGACTGAGTTTCACTCCCGACGGA TGAAGTCTTTCTTCCGTAGACTGACTTTCACTCCCGACGGA < 41bp 0.731731512793121 0.439330787475955 0.35343307 0.28244472 prediction 0.463463025586242 Functional Loss - CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37775110 chr21:37775114 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_73888 0 0 1 0 2 CHAF1B chr21:37775149 5'GT 37775149 Upstream 36bp
chr8 30034704 30034704 1 + C T STAD 30034702 + 30034682 30034722 41 CCAAAACCTATGATCATTGGCACCAATAATGTGTTTGAAGT CCAAAACCTATGATCATTGGCATCAATAATGTGTTTGAAGT < 41bp 0.731730208162458 0.438456304927463 0.0147538185 0.031024903 prediction 0.463460416324916 Functional Loss - DCTN6 ENSG00000104671 CDS Human protein_coding chr8:30034702 chr8:30034704 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_73890 0 0 1 0 2 DCTN6 chr8:30034642 3'AG 30034642 Downstream 63bp
chr8 30034704 30034704 1 + C T STAD 30034702 + 30034682 30034722 41 CCAAAACCTATGATCATTGGCACCAATAATGTGTTTGAAGT CCAAAACCTATGATCATTGGCATCAATAATGTGTTTGAAGT < 41bp 0.731730208162458 0.438456304927463 0.0147538185 0.031024903 prediction 0.463460416324916 Functional Loss - DCTN6 ENSG00000104671 CDS Human protein_coding chr8:30034702 chr8:30034704 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_73890 0 0 1 0 2 DCTN6 chr8:30034730 5'GT 30034730 Upstream 27bp
chr1 150471087 150471087 1 + C T UCEC 150471085 + 150471065 150471105 41 TGGTGGTCTGGGGGGACTGACCCGACTGCGGTGCTTCCAGC TGGTGGTCTGGGGGGACTGACCTGACTGCGGTGCTTCCAGC < 41bp 0.849307807192966 0.617578067436856 0.6722167 0.83668935 prediction 0.463459479512221 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150471085 chr1:150471087 stopgain 0.466 1 23 hm5C_associated_SNPs_73891 0 0 1 0 1 TARS2 chr1:150471140 5'GT 150471140 Upstream 54bp
chr11 22747884 22747884 1 + G A COAD 22747881 + 22747861 22747901 41 ATGCAAAACCAGTGCACCCTCGGGCTCCTTTTTTGCCAGAG ATGCAAAACCAGTGCACCCTCGGACTCCTTTTTTGCCAGAG < 41bp 0.745254761864887 0.513525566555248 0.8830565 0.40377995 prediction 0.463458390619278 Functional Loss - GAS2 ENSG00000148935 CDS Human protein_coding chr11:22747881 chr11:22747884 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_73892 0 0 1 0 2 GAS2 chr11:22747838 3'AG 22747838 Downstream 47bp
chr11 22747884 22747884 1 + G A COAD 22747881 + 22747861 22747901 41 ATGCAAAACCAGTGCACCCTCGGGCTCCTTTTTTGCCAGAG ATGCAAAACCAGTGCACCCTCGGACTCCTTTTTTGCCAGAG < 41bp 0.745254761864887 0.513525566555248 0.8830565 0.40377995 prediction 0.463458390619278 Functional Loss - GAS2 ENSG00000148935 CDS Human protein_coding chr11:22747881 chr11:22747884 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_73892 0 0 1 0 2 GAS2 chr11:22747979 5'GT 22747979 Upstream 96bp
chr1 156024741 156024741 1 + A C STAD 156024737 + 156024717 156024757 41 CAAGCCAACACTGGAGGCGTCCAGAGCACCCTGTGAGTGCA CAAGCCAACACTGGAGGCGTCCAGCGCACCCTGTGAGTGCA < 41bp 0.73172543942269 0.33697712955965 0.2816611 0.17441326 prediction 0.46345087884538 Functional Loss - LAMTOR2 ENSG00000116586 CDS Human protein_coding chr1:156024737 chr1:156024741 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_73895 0 0 1 0 1 LAMTOR2 chr1:156024748 5'GT 156024748 Upstream 8bp
chr11 61488319 61488319 1 + G A UCEC 61488316 + 61488296 61488336 41 ATGCGCGGGGGCATCCTCTACACGGAGCCCCGTGACTCCAT ATGCGCGGGGGCATCCTCTACACAGAGCCCCGTGACTCCAT < 41bp 0.76999852834698 0.538273642975367 0.7304573 0.44519714 prediction 0.463449770743225 Functional Loss - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61488316 chr11:61488319 synonymous SNV . 0 24 hm5C_associated_SNPs_73896 0 0 1 0 1 DAGLA chr11:61488362 5'GT 61488362 Upstream 44bp
chr16 85112625 85112625 1 + C T rs200591815 85112623 + 85112603 85112643 41 CCATCTGGTAAGGCCGAGCCCGCGGCTTCCCGTCACCCTCT CCATCTGGTAAGGCCGAGCCCGTGGCTTCCCGTCACCCTCT < 41bp 0.731721736323623 0.493269378309743 0.8013077 0.5033348 prediction 0.463443472647246 Functional Loss - KIAA0513 ENSG00000135709 UTR3 Human protein_coding chr16:85112623 chr16:85112625 . . 0 23 hm5C_associated_SNPs_73899 0 0 0 0 1 KIAA0513 chr16:85112531 3'AG 85112531 Downstream 95bp
chr13 31540506 31540506 1 + C T SKCM 31540504 + 31540484 31540524 41 AGTTTCAAATATGGATGCTACTCAAGCTTGCCTGTTGCTTC AGTTTCAAATATGGATGCTACTTAAGCTTGCCTGTTGCTTC < 41bp 0.731717727533967 0.452973412821202 0.23506081 0.065078765 prediction 0.463435455067935 Functional Loss - TEX26 ENSG00000175664 CDS Human protein_coding chr13:31540504 chr13:31540506 nonsynonymous SNV 0.017 1 23 hm5C_associated_SNPs_73902 0 0 0 0 1 TEX26 chr13:31540535 5'GT 31540535 Upstream 30bp
chr3 100020987 100020987 1 + G T SARC 100020984 + 100020964 100021004 41 ACAGAAGCAGTCCATTGAGTCTGGCTCCATAGCTGGTGGGG ACAGAAGCAGTCCATTGAGTCTGTCTCCATAGCTGGTGGGG < 41bp 0.731716348119779 0.336658456021199 0.1585969 0.015571445 prediction 0.463432696239559 Functional Loss - TBC1D23 ENSG00000036054 CDS Human protein_coding chr3:100020984 chr3:100020987 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_73903 0 0 0 0 2 TBC1D23 chr3:100020911 3'AG 100020911 Downstream 77bp
chr3 100020987 100020987 1 + G T SARC 100020984 + 100020964 100021004 41 ACAGAAGCAGTCCATTGAGTCTGGCTCCATAGCTGGTGGGG ACAGAAGCAGTCCATTGAGTCTGTCTCCATAGCTGGTGGGG < 41bp 0.731716348119779 0.336658456021199 0.1585969 0.015571445 prediction 0.463432696239559 Functional Loss - TBC1D23 ENSG00000036054 CDS Human protein_coding chr3:100020984 chr3:100020987 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_73903 0 0 0 0 2 TBC1D23 chr3:100021081 5'GT 100021081 Upstream 95bp
chr1 212254045 212254045 1 + C T ESCA 212254043 + 212254023 212254063 41 CCAGGAGGTGATAAACTTTCCACGGTGGGTTGGGCCTCTCA CCAGGAGGTGATAAACTTTCCATGGTGGGTTGGGCCTCTCA < 41bp 0.828874240108921 0.597159012978425 0.4672082 0.4797702 prediction 0.463430454260991 Functional Loss - DTL ENSG00000143476 CDS Human protein_coding chr1:212254043 chr1:212254045 nonsynonymous SNV 0.981 0 23 hm5C_associated_SNPs_73904 0 0 1 0 2 DTL chr1:212253957 3'AG 212253957 Downstream 89bp
chr1 212254045 212254045 1 + C T ESCA 212254043 + 212254023 212254063 41 CCAGGAGGTGATAAACTTTCCACGGTGGGTTGGGCCTCTCA CCAGGAGGTGATAAACTTTCCATGGTGGGTTGGGCCTCTCA < 41bp 0.828874240108921 0.597159012978425 0.4672082 0.4797702 prediction 0.463430454260991 Functional Loss - DTL ENSG00000143476 CDS Human protein_coding chr1:212254043 chr1:212254045 nonsynonymous SNV 0.981 0 23 hm5C_associated_SNPs_73904 0 0 1 0 2 DTL chr1:212254092 5'GT 212254092 Upstream 48bp
chr3 179426668 179426668 1 + G T LUAD 179426666 + 179426646 179426686 41 TTTGACAGCTCTGGGGGCAACGGGCATGCGCTGGAGCATTA TTTGACAGCTCTGGGGGCAACGTGCATGCGCTGGAGCATTA < 41bp 0.73170710250603 0.377693096715859 0.77053106 0.64446235 prediction 0.463414205012059 Functional Loss - USP13 ENSG00000058056 CDS Human protein_coding chr3:179426666 chr3:179426668 nonsynonymous SNV 0.474 4 23 hm5C_associated_SNPs_73907 0 0 1 0 1 USP13 chr3:179426745 5'GT 179426745 Upstream 78bp
chr11 57114101 57114101 1 + G A BLCA 57114098 + 57114078 57114118 41 GGTAACCAAGGTGAAGGGCTCCGGACTCTACGCCAACAGAG GGTAACCAAGGTGAAGGGCTCCGAACTCTACGCCAACAGAG < 41bp 0.778285357730387 0.546579379276498 0.7639494 0.19433635 prediction 0.463411956907778 Functional Loss - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57114098 chr11:57114101 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_73908 0 0 0 0 2 P2RX3 chr11:57114018 3'AG 57114018 Downstream 84bp
chr11 57114101 57114101 1 + G A BLCA 57114098 + 57114078 57114118 41 GGTAACCAAGGTGAAGGGCTCCGGACTCTACGCCAACAGAG GGTAACCAAGGTGAAGGGCTCCGAACTCTACGCCAACAGAG < 41bp 0.778285357730387 0.546579379276498 0.7639494 0.19433635 prediction 0.463411956907778 Functional Loss - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57114098 chr11:57114101 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_73908 0 0 0 0 2 P2RX3 chr11:57114153 5'GT 57114153 Upstream 53bp
chr15 74622668 74622668 1 + G A KIRC 74622665 + 74622645 74622685 41 AGCAGGAGGAGGAAGAGGGGCAGGGCAAAGCCAGTGAGGCC AGCAGGAGGAGGAAGAGGGGCAGAGCAAAGCCAGTGAGGCC < 41bp 0.774544546556858 0.542840462246609 0.89364815 0.8538679 prediction 0.463408168620499 Functional Loss - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74622665 chr15:74622668 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_73910 0 0 0 0 1 CCDC33 chr15:74622695 5'GT 74622695 Upstream 28bp
chr20 35173319 35173319 1 + C T SKCM 35173317 + 35173297 35173337 41 AAGCGGGCCAAAGCCAAGACCACCAAGAAGCGGCCACAGCG AAGCGGGCCAAAGCCAAGACCATCAAGAAGCGGCCACAGCG < 41bp 0.731691674218859 0.442265241547398 0.10198864 0.043907106 prediction 0.463383348437718 Functional Loss - MYL9 ENSG00000101335 CDS Human antisense chr20:35173317 chr20:35173319 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_73915 0 0 0 0 1 DLGAP4-AS1 chr20:35173262 3'AG 35173262 Downstream 58bp
chrX 15540484 15540484 1 + G A SKCM 15540481 + 15540461 15540501 41 CTCCAAAGCTGAAGATACCTCGGGCAGTTCCTGTTCTCAAA CTCCAAAGCTGAAGATACCTCGGACAGTTCCTGTTCTCAAA < 41bp 0.731691513147283 0.49085444577865 0.40116176 0.060691327 prediction 0.463383026294565 Functional Loss - BMX ENSG00000102010 CDS Human protein_coding chrX:15540481 chrX:15540484 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_73916 0 0 0 0 1 BMX chrX:15540469 3'AG 15540469 Downstream 16bp
chr14 24523473 24523473 1 + T C SKCM 24523472 + 24523452 24523492 41 TGGAGAGCTCCTTCAATGTCCTGGAGATCCGTGCCTTCAAC TGGAGAGCTCCTTCAATGTCCCGGAGATCCGTGCCTTCAAC < 41bp 0.759605689409646 0.527916687442954 0.21336854 0.345847 prediction 0.463378003933385 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24523472 chr14:24523473 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_73919 0 0 0 0 2 CARMIL3 chr14:24523451 3'AG 24523451 Downstream 23bp
chr14 24523473 24523473 1 + T C SKCM 24523472 + 24523452 24523492 41 TGGAGAGCTCCTTCAATGTCCTGGAGATCCGTGCCTTCAAC TGGAGAGCTCCTTCAATGTCCCGGAGATCCGTGCCTTCAAC < 41bp 0.759605689409646 0.527916687442954 0.21336854 0.345847 prediction 0.463378003933385 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24523472 chr14:24523473 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_73919 0 0 0 0 2 CARMIL3 chr14:24523510 5'GT 24523510 Upstream 38bp
chr16 1395034 1395034 1 + C T HNSC 1395032 + 1395012 1395052 41 AAGATGACCCTGGAGGTGGCCTCGGGGCTCTTTGAGCTCTA AAGATGACCCTGGAGGTGGCCTTGGGGCTCTTTGAGCTCTA < 41bp 0.731688379844209 0.453163331685284 0.66105133 0.289985 prediction 0.463376759688418 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1395032 chr16:1395034 nonsynonymous SNV 0.994 0 23 hm5C_associated_SNPs_73921 0 0 1 0 2 BAIAP3 chr16:1394970 3'AG 1394970 Downstream 65bp
chr16 1395034 1395034 1 + C T HNSC 1395032 + 1395012 1395052 41 AAGATGACCCTGGAGGTGGCCTCGGGGCTCTTTGAGCTCTA AAGATGACCCTGGAGGTGGCCTTGGGGCTCTTTGAGCTCTA < 41bp 0.731688379844209 0.453163331685284 0.66105133 0.289985 prediction 0.463376759688418 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1395032 chr16:1395034 nonsynonymous SNV 0.994 0 23 hm5C_associated_SNPs_73921 0 0 1 0 2 BAIAP3 chr16:1395100 5'GT 1395100 Upstream 67bp
chr1 55139782 55139782 1 + G A BLCA 55139779 + 55139759 55139799 41 AGGAGATTGGCTGTGAGGCTCTGGACGGCATCATCATCCTC AGGAGATTGGCTGTGAGGCTCTGAACGGCATCATCATCCTC < 41bp 0.771988373733487 0.540302482573531 0.13036045 0.03809917 prediction 0.463371782319913 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55139779 chr1:55139782 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_73923 0 0 0 0 2 MROH7 chr1:55139689 3'AG 55139689 Downstream 94bp
chr1 55139782 55139782 1 + G A BLCA 55139779 + 55139759 55139799 41 AGGAGATTGGCTGTGAGGCTCTGGACGGCATCATCATCCTC AGGAGATTGGCTGTGAGGCTCTGAACGGCATCATCATCCTC < 41bp 0.771988373733487 0.540302482573531 0.13036045 0.03809917 prediction 0.463371782319913 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55139779 chr1:55139782 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_73923 0 0 0 0 2 MROH7 chr1:55139824 5'GT 55139824 Upstream 43bp
chr10 60560686 60560686 1 + G A COAD 60560683 + 60560663 60560703 41 TTTTGTTGAAGTAGGCATGCCTCGAAGTCCTTCCCATTCTG TTTTGTTGAAGTAGGCATGCCTCAAAGTCCTTCCCATTCTG < 41bp 0.731684946870139 0.492980015901008 0.8608762 0.8571672 prediction 0.463369893740278 Functional Loss - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60560683 chr10:60560686 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_73924 0 0 1 0 1 BICC1 chr10:60560650 3'AG 60560650 Downstream 37bp
chr2 27157528 27157528 1 + G A CESC 27157525 + 27157505 27157545 41 TACCACCAGGACTGGTCCCACGCGGCTGCCTATGTCACGGT TACCACCAGGACTGGTCCCACGCAGCTGCCTATGTCACGGT < 41bp 0.771663410420203 0.539978722533193 0.6255429 0.17617795 prediction 0.463369375774021 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157525 chr2:27157528 synonymous SNV . 0 24 hm5C_associated_SNPs_73925 0 0 0 0 2 DPYSL5 chr2:27157446 3'AG 27157446 Downstream 83bp
chr2 27157528 27157528 1 + G A CESC 27157525 + 27157505 27157545 41 TACCACCAGGACTGGTCCCACGCGGCTGCCTATGTCACGGT TACCACCAGGACTGGTCCCACGCAGCTGCCTATGTCACGGT < 41bp 0.771663410420203 0.539978722533193 0.6255429 0.17617795 prediction 0.463369375774021 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157525 chr2:27157528 synonymous SNV . 0 24 hm5C_associated_SNPs_73925 0 0 0 0 2 DPYSL5 chr2:27157602 5'GT 27157602 Upstream 75bp
chr8 143559695 143559695 1 + G A SKCM 143559692 + 143559672 143559712 41 CCAGGGCCACTGGGTGGAGACCCGAGACTGCTTCCTGCAGC CCAGGGCCACTGGGTGGAGACCCAAGACTGCTTCCTGCAGC < 41bp 0.760567996958245 0.528885195986094 0.911251 0.903128 prediction 0.463365601944301 Functional Loss - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143559692 chr8:143559695 nonsynonymous SNV 0.987 2 24 hm5C_associated_SNPs_73926 0 0 0 0 1 ADGRB1 chr8:143559721 5'GT 143559721 Upstream 27bp
chr1 201860549 201860549 1 + G T UCEC 201860547 + 201860527 201860567 41 AGGCCAGGAGATTCCAATGACAGGCATCCCAGTGCAGCCAG AGGCCAGGAGATTCCAATGACATGCATCCCAGTGCAGCCAG < 41bp 0.731680434679096 0.377659834515742 0.6036057 0.20596698 prediction 0.463360869358192 Functional Loss - SHISA4 ENSG00000198892 CDS Human protein_coding chr1:201860547 chr1:201860549 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_73928 0 0 1 0 1 SHISA4 chr1:201860529 3'AG 201860529 Downstream 21bp
chr12 69965192 69965192 1 + T C LIHC 69965191 + 69965171 69965211 41 TCAGACAGAATTGGAAGTCCCTAGAACACCTCGAACACCTA TCAGACAGAATTGGAAGTCCCCAGAACACCTCGAACACCTA < 41bp 0.731670192117222 0.476262027742932 0.25355226 0.19050395 prediction 0.463340384234443 Functional Loss - FRS2 ENSG00000166225 CDS Human protein_coding chr12:69965191 chr12:69965192 synonymous SNV . 0 22 hm5C_associated_SNPs_73933 0 0 1 0 1 FRS2 chr12:69965214 5'GT 69965214 Upstream 23bp
chr11 15247321 15247321 1 + C T SKCM 15247318 + 15247298 15247338 41 AGTTGAATGCCATCCGTGTTCTCCTGGAAGCCTGCAGTGAC AGTTGAATGCCATCCGTGTTCTCTTGGAAGCCTGCAGTGAC < 41bp 0.734006529276947 0.50234052329597 0.093061894 0.037032038 prediction 0.463332011961955 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15247318 chr11:15247321 synonymous SNV . 0 24 hm5C_associated_SNPs_73936 0 0 0 0 1 INSC chr11:15247374 5'GT 15247374 Upstream 54bp
chr4 151169507 151169507 1 + G A UCEC 151169504 + 151169484 151169524 41 AATGTTGAAGCTCGGTGTACCGCGGGACAAATCCTGAGTCA AATGTTGAAGCTCGGTGTACCGCAGGACAAATCCTGAGTCA < 41bp 0.77587188193865 0.544210804680942 0.9045071 0.41323233 prediction 0.463322154515416 Functional Loss - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151169504 chr4:151169507 synonymous SNV . 0 24 hm5C_associated_SNPs_73937 0 0 0 0 2 DCLK2 chr4:151169457 3'AG 151169457 Downstream 51bp
chr4 151169507 151169507 1 + G A UCEC 151169504 + 151169484 151169524 41 AATGTTGAAGCTCGGTGTACCGCGGGACAAATCCTGAGTCA AATGTTGAAGCTCGGTGTACCGCAGGACAAATCCTGAGTCA < 41bp 0.77587188193865 0.544210804680942 0.9045071 0.41323233 prediction 0.463322154515416 Functional Loss - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151169504 chr4:151169507 synonymous SNV . 0 24 hm5C_associated_SNPs_73937 0 0 0 0 2 DCLK2 chr4:151169537 5'GT 151169537 Upstream 31bp
chr1 161130985 161130985 1 + G A CESC 161130982 + 161130962 161131002 41 GCTTCCCATGGCTCCTTCCACATGATATCCGCCCGGTCCTC GCTTCCCATGGCTCCTTCCACATAATATCCGCCCGGTCCTC < 41bp 0.778867951261395 0.547214623653271 0.15798113 0.07435128 prediction 0.463306655216248 Functional Loss - USP21 ENSG00000143258 CDS Human protein_coding chr1:161130982 chr1:161130985 nonsynonymous SNV 0.982 0 24 hm5C_associated_SNPs_73941 0 0 1 0 1 USP21 chr1:161131030 5'GT 161131030 Upstream 46bp
chr5 179125590 179125590 1 + C T rs146225762 179125588 + 179125568 179125608 41 CGATGCGTCCCAAGTCTCGGCTCCAGGAACCAGACGGGTGA CGATGCGTCCCAAGTCTCGGCTTCAGGAACCAGACGGGTGA < 41bp 0.764486770791761 0.532836890784588 0.81906825 0.11239362 prediction 0.463299760014346 Functional Loss - CANX ENSG00000127022 CDS Human protein_coding chr5:179125588 chr5:179125590 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_73944 0 0 0 0 1 CANX chr5:179125604 5'GT 179125604 Upstream 15bp
chr3 50677844 50677844 1 + G A UCEC 50677841 + 50677821 50677861 41 CGGCAGGAGGTAGACCATCACTGGCAGGCTTCTGGCGGCCC CGGCAGGAGGTAGACCATCACTGACAGGCTTCTGGCGGCCC < 41bp 0.731647801661023 0.484558059266096 0.2390104 0.095294416 prediction 0.463295603322045 Functional Loss - MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50677841 chr3:50677844 stopgain 1.000 1 24 hm5C_associated_SNPs_73945 0 0 0 0 2 MAPKAPK3 chr3:50677797 3'AG 50677797 Downstream 48bp
chr3 50677844 50677844 1 + G A UCEC 50677841 + 50677821 50677861 41 CGGCAGGAGGTAGACCATCACTGGCAGGCTTCTGGCGGCCC CGGCAGGAGGTAGACCATCACTGACAGGCTTCTGGCGGCCC < 41bp 0.731647801661023 0.484558059266096 0.2390104 0.095294416 prediction 0.463295603322045 Functional Loss - MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50677841 chr3:50677844 stopgain 1.000 1 24 hm5C_associated_SNPs_73945 0 0 0 0 2 MAPKAPK3 chr3:50677936 5'GT 50677936 Upstream 93bp
chr19 36207170 36207170 1 + A T LIHC 36207166 + 36207146 36207186 41 GAAAGAGGTTTTCACTCAAGCATCAGATGGAGACGCACTAC GAAAGAGGTTTTCACTCAAGCATCTGATGGAGACGCACTAC < 41bp 0.731645442648687 0.40430546506774 0.26758766 0.17452925 prediction 0.463290885297375 Functional Loss - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36207166 chr19:36207170 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_73946 0 0 0 0 1 ZBTB32 chr19:36207199 5'GT 36207199 Upstream 30bp
chr12 57484919 57484919 1 + G A UCEC 57484916 + 57484896 57484936 41 CCTCCTTCTCAGGCCCAGTGCCCGAGCCATGGCACTGCCTC CCTCCTTCTCAGGCCCAGTGCCCAAGCCATGGCACTGCCTC < 41bp 0.765734846466261 0.534091187361705 0.16918603 0.027610958 prediction 0.463287318209113 Functional Loss - NAB2 ENSG00000166886 CDS Human protein_coding chr12:57484916 chr12:57484919 nonsynonymous SNV 0.706 0 24 hm5C_associated_SNPs_73947 0 0 1 0 1 NAB2 chr12:57484908 3'AG 57484908 Downstream 12bp
chr5 176863232 176863232 1 + G A UCEC 176863229 + 176863209 176863249 41 AGCGGCTGGTGAAGGAGGTCCCCGAGGAGTATTCCGAGCGC AGCGGCTGGTGAAGGAGGTCCCCAAGGAGTATTCCGAGCGC < 41bp 0.782165207431708 0.550523910526519 0.6006347 0.4692602 prediction 0.463282593810377 Functional Loss - GRK6 ENSG00000198055 CDS Human protein_coding chr5:176863229 chr5:176863232 nonsynonymous SNV 0.574 1 24 hm5C_associated_SNPs_73950 0 0 1 0 1 GRK6 chr5:176863282 5'GT 176863282 Upstream 51bp
chr17 70117890 70117890 1 + C T COAD 70117888 + 70117868 70117908 41 CATGGTGTGGGCGCAGGCGGCGCGCAGGAAGCTCGCGGACC CATGGTGTGGGCGCAGGCGGCGTGCAGGAAGCTCGCGGACC < 41bp 0.774263880763886 0.542626924381045 0.5605526 0.6128166 prediction 0.463273912765682 Functional Loss - SOX9 ENSG00000125398 CDS Human protein_coding chr17:70117888 chr17:70117890 nonsynonymous SNV 0.880 4 23 hm5C_associated_SNPs_73953 0 0 1 0 1 SOX9 chr17:70117963 5'GT 70117963 Upstream 74bp
chr12 4881680 4881680 1 + G A rs34114277 4881677 + 4881657 4881697 41 AGAAGGATCTTTTGGGTAGCCACGTGCTTGTGCTCCAGACC AGAAGGATCTTTTGGGTAGCCACATGCTTGTGCTCCAGACC < 41bp 0.731631991188116 0.488446778487196 0.8567078 0.9000981 prediction 0.463263982376231 Functional Loss - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4881677 chr12:4881680 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_73955 0 0 0 0 1 GALNT8 chr12:4881611 3'AG 4881611 Downstream 70bp
chr15 91496243 91496243 1 + G A rs140310728 91496240 + 91496220 91496260 41 GAGATGATCCGCCGGGCAGCCACGGAGTGCATGTGTAACTT GAGATGATCCGCCGGGCAGCCACAGAGTGCATGTGTAACTT < 41bp 0.748930499201917 0.517304355184075 0.35946837 0.36416173 prediction 0.463252288035682 Functional Loss - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91496240 chr15:91496243 synonymous SNV . 0 24 hm5C_associated_SNPs_73957 0 0 1 0 2 UNC45A chr15:91496159 3'AG 91496159 Downstream 85bp
chr15 91496243 91496243 1 + G A rs140310728 91496240 + 91496220 91496260 41 GAGATGATCCGCCGGGCAGCCACGGAGTGCATGTGTAACTT GAGATGATCCGCCGGGCAGCCACAGAGTGCATGTGTAACTT < 41bp 0.748930499201917 0.517304355184075 0.35946837 0.36416173 prediction 0.463252288035682 Functional Loss - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91496240 chr15:91496243 synonymous SNV . 0 24 hm5C_associated_SNPs_73957 0 0 1 0 2 UNC45A chr15:91496276 5'GT 91496276 Upstream 34bp
chr6 7862703 7862703 1 + G T UCEC 7862701 + 7862681 7862721 41 GTAATCGCTCTACCCAGTCCCAGGACGTGGCGCGGGTCTCC GTAATCGCTCTACCCAGTCCCATGACGTGGCGCGGGTCTCC < 41bp 0.903473396060601 0.671847425964853 0.9269885 0.20192581 prediction 0.463251940191495 Functional Loss - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7862701 chr6:7862703 nonsynonymous SNV 0.966 1 23 hm5C_associated_SNPs_73958 0 0 0 0 1 BMP6 chr6:7862731 5'GT 7862731 Upstream 29bp
chr12 56115129 56115129 1 + G C LUSC 56115128 + 56115108 56115148 41 AGCTGGACCAGAGAGGCTTCCGAGTCCTGGCCAGCTGCCTG AGCTGGACCAGAGAGGCTTCCCAGTCCTGGCCAGCTGCCTG < 41bp 0.731619369086541 0.406643689186313 0.46669576 0.16818324 prediction 0.463238738173082 Functional Loss - RDH5 ENSG00000135437 CDS Human protein_coding chr12:56115128 chr12:56115129 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_73960 0 0 0 0 1 RDH5 chr12:56115084 3'AG 56115084 Downstream 46bp
chrX 48760292 48760292 1 + G T SARC 48760290 + 48760270 48760310 41 CTGGGCCCCTCTTCCAGCAGCGGCCGTATCCATCCCCAGGG CTGGGCCCCTCTTCCAGCAGCGTCCGTATCCATCCCCAGGG < 41bp 0.731608519910862 0.410225982842945 0.7248899 0.507799 prediction 0.463217039821724 Functional Loss - PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48760290 chrX:48760292 synonymous SNV . 0 23 hm5C_associated_SNPs_73966 0 0 1 0 1 PQBP1 chrX:48760205 3'AG 48760205 Downstream 88bp
chr3 197687095 197687095 1 + G T HNSC 197687092 + 197687072 197687112 41 CGCAGAGGCGTCACGCACTCCATGGTAACGACGCTCGGCCC CGCAGAGGCGTCACGCACTCCATTGTAACGACGCTCGGCCC < 41bp 0.787040994381302 0.555432499985828 0.36433554 0.10020512 prediction 0.463216988790949 Functional Loss - LMLN ENSG00000185621 CDS Human protein_coding chr3:197687092 chr3:197687095 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_73967 0 0 0 0 1 LMLN chr3:197687190 5'GT 197687190 Upstream 96bp
chr12 6499481 6499481 1 + C T UCEC 6499479 + 6499459 6499499 41 CCAGGGAGCCGCAGTTGGAACCCGGGGAGCAGAGCCAGGTG CCAGGGAGCCGCAGTTGGAACCTGGGGAGCAGAGCCAGGTG < 41bp 0.789623674120332 0.558020256145403 0.87230223 0.6863356 prediction 0.463206835949858 Functional Loss - LTBR ENSG00000111321 CDS Human protein_coding chr12:6499479 chr12:6499481 synonymous SNV . 0 23 hm5C_associated_SNPs_73969 0 0 1 0 1 LTBR chr12:6499506 5'GT 6499506 Upstream 26bp
chr22 46708156 46708156 1 + G A rs201701933 46708153 + 46708133 46708173 41 TGCTGTCAATGTGCCGGCCGCCGGAAGCCACTTGGGCCAGG TGCTGTCAATGTGCCGGCCGCCGAAAGCCACTTGGGCCAGG < 41bp 0.731600292891426 0.478241745908279 0.8820302 0.53837305 prediction 0.463200585782852 Functional Loss - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46708153 chr22:46708156 nonsynonymous SNV 0.010 1 24 hm5C_associated_SNPs_73971 0 0 1 0 1 GTSE1 chr22:46708202 5'GT 46708202 Upstream 47bp
chr7 23309653 23309653 1 + A C BRCA 23309649 + 23309629 23309669 41 GAGATCACCCAGAACACAGTCTGCAGCCCTGTGGATGTGGA GAGATCACCCAGAACACAGTCTGCCGCCCTGTGGATGTGGA < 41bp 0.731596328114878 0.293248253745492 0.19678977 0.074521095 prediction 0.463192656229755 Functional Loss - GPNMB ENSG00000136235 CDS Human protein_coding chr7:23309649 chr7:23309653 nonsynonymous SNV 0.016 1 25 hm5C_associated_SNPs_73973 0 0 0 0 1 GPNMB chr7:23309586 3'AG 23309586 Downstream 68bp
chr7 23309650 23309650 1 + T C UCEC 23309649 + 23309629 23309669 41 GAGATCACCCAGAACACAGTCTGCAGCCCTGTGGATGTGGA GAGATCACCCAGAACACAGTCCGCAGCCCTGTGGATGTGGA < 41bp 0.731596328114878 0.461652304602941 0.19678977 0.05902961 prediction 0.463192656229755 Functional Loss - GPNMB ENSG00000136235 CDS Human protein_coding chr7:23309649 chr7:23309650 nonsynonymous SNV 0.076 4 22 hm5C_associated_SNPs_73974 0 0 0 0 1 GPNMB chr7:23309586 3'AG 23309586 Downstream 65bp
chr6 90312801 90312801 1 - C T SKCM 90312804 - 90312784 90312824 41 CACCCTTCGTGGATGAGCGCCGCGATGATCTCCGTGTTCCC CACCCTTCGTGGATGAGCGCCGCAATGATCTCCGTGTTCCC < 41bp 0.743792866349218 0.512207553710467 0.22814775 0.11521149 prediction 0.463170625277501 Functional Loss - ANKRD6 ENSG00000135299 CDS Human protein_coding chr6:90312804 chr6:90312801 synonymous SNV . 0 24 hm5C_associated_SNPs_73980 0 0 0 0 1 ANKRD6 chr6:90312828 3'AG 90312828 Downstream 28bp
chr19 11030602 11030602 1 + G A OV 11030599 + 11030579 11030619 41 TGCTGCATTCAGGGCTGGTCCACGGCCTGGCTTTCTGGTTT TGCTGCATTCAGGGCTGGTCCACAGCCTGGCTTTCTGGTTT < 41bp 0.777371665415703 0.545788483341531 0.09563416 0.01664123 prediction 0.463166364148345 Functional Loss - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11030599 chr19:11030602 nonsynonymous SNV 0.984 4 24 hm5C_associated_SNPs_73982 0 0 1 0 3 CARM1 chr19:11030509 3'AG 11030509 Downstream 94bp
chr19 11030602 11030602 1 + G A OV 11030599 + 11030579 11030619 41 TGCTGCATTCAGGGCTGGTCCACGGCCTGGCTTTCTGGTTT TGCTGCATTCAGGGCTGGTCCACAGCCTGGCTTTCTGGTTT < 41bp 0.777371665415703 0.545788483341531 0.09563416 0.01664123 prediction 0.463166364148345 Functional Loss - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11030599 chr19:11030602 nonsynonymous SNV 0.984 4 24 hm5C_associated_SNPs_73982 0 0 1 0 3 CARM1 chr19:11030553 3'AG 11030553 Downstream 50bp
chr19 11030602 11030602 1 + G A OV 11030599 + 11030579 11030619 41 TGCTGCATTCAGGGCTGGTCCACGGCCTGGCTTTCTGGTTT TGCTGCATTCAGGGCTGGTCCACAGCCTGGCTTTCTGGTTT < 41bp 0.777371665415703 0.545788483341531 0.09563416 0.01664123 prediction 0.463166364148345 Functional Loss - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11030599 chr19:11030602 nonsynonymous SNV 0.984 4 24 hm5C_associated_SNPs_73982 0 0 1 0 3 CARM1 chr19:11030642 5'GT 11030642 Upstream 41bp
chr1 16069671 16069671 1 + G A rs138383534 16069668 + 16069648 16069688 41 TTCTCCCTCCGGGCCGTGTCCACGCTGCTGTCCCTGGGCAA TTCTCCCTCCGGGCCGTGTCCACACTGCTGTCCCTGGGCAA < 41bp 0.790286081224339 0.558704007353005 0.5687022 0.48256242 prediction 0.463164147742666 Functional Loss - TMEM82 ENSG00000162460 CDS Human protein_coding chr1:16069668 chr1:16069671 synonymous SNV . 0 24 hm5C_associated_SNPs_73983 0 0 0 0 1 TMEM82 chr1:16069689 5'GT 16069689 Upstream 19bp
chr4 1219224 1219224 1 - C T CESC 1219227 - 1219207 1219247 41 CTGCGGGAGGGCACACGAGTCCAGAGCGTCGAGCAGATCCG CTGCGGGAGGGCACACGAGTCCAAAGCGTCGAGCAGATCCG < 41bp 0.757874254806916 0.526295283036456 0.32976013 0.15584329 prediction 0.46315794354092 Functional Loss - CTBP1 ENSG00000159692 CDS Human protein_coding chr4:1219227 chr4:1219224 synonymous SNV . 0 24 hm5C_associated_SNPs_73984 0 0 1 0 1 CTBP1 chr4:1219148 5'GT 1219148 Upstream 77bp
chr1 207241029 207241029 1 + G A COAD 207241026 + 207241006 207241046 41 GGGGAAGATTGGGGGTGACTCTGGCCTCTCGGTGCGGGGAA GGGGAAGATTGGGGGTGACTCTGACCTCTCGGTGCGGGGAA < 41bp 0.792223760927239 0.560645176603905 0.898224 0.70831984 prediction 0.463157168646667 Functional Loss - PFKFB2 ENSG00000123836 CDS Human protein_coding chr1:207241026 chr1:207241029 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_73985 0 0 1 0 1 PFKFB2 chr1:207241051 5'GT 207241051 Upstream 23bp
chr1 155057577 155057577 1 + G A LIHC 155057574 + 155057554 155057594 41 CTCTTCCCCACAGCCTGCGGCGAGAGGGCTACACCGTGCAG CTCTTCCCCACAGCCTGCGGCGAAAGGGCTACACCGTGCAG < 41bp 0.731577132949803 0.48796546407295 0.7949798 0.41021937 prediction 0.463154265899605 Functional Loss - EFNA3 ENSG00000143590;ENSG00000251246 CDS Human other chr1:155057574 chr1:155057577 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_73988 0 0 0 0 1 EFNA3 chr1:155057567 3'AG 155057567 Downstream 11bp
chr17 4635160 4635160 1 + G A STAD 4635157 + 4635137 4635177 41 CCTTCACCGCTTCAGTGCAACACGTGGAGGCGGAGCTGTCA CCTTCACCGCTTCAGTGCAACACATGGAGGCGGAGCTGTCA < 41bp 0.739018851598743 0.507442800842803 0.0992074 0.15871862 prediction 0.463152101511881 Functional Loss - MED11 ENSG00000161920 CDS Human protein_coding chr17:4635157 chr17:4635160 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_73990 0 0 1 0 2 MED11 chr17:4635071 3'AG 4635071 Downstream 90bp
chr17 4635160 4635160 1 + G A STAD 4635157 + 4635137 4635177 41 CCTTCACCGCTTCAGTGCAACACGTGGAGGCGGAGCTGTCA CCTTCACCGCTTCAGTGCAACACATGGAGGCGGAGCTGTCA < 41bp 0.739018851598743 0.507442800842803 0.0992074 0.15871862 prediction 0.463152101511881 Functional Loss - MED11 ENSG00000161920 CDS Human protein_coding chr17:4635157 chr17:4635160 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_73990 0 0 1 0 2 MED11 chr17:4635201 5'GT 4635201 Upstream 42bp
chr19 43858504 43858504 1 + C T CESC 43858502 + 43858482 43858522 41 AGGAGGACTTCTGCAACAACCTCGTTAACTCCCTCCCGCTT AGGAGGACTTCTGCAACAACCTTGTTAACTCCCTCCCGCTT < 41bp 0.799671814348433 0.568095803483754 0.37301198 0.2231141 prediction 0.463152021729357 Functional Loss - CD177 ENSG00000204936 CDS Human protein_coding chr19:43858502 chr19:43858504 synonymous SNV . 0 23 hm5C_associated_SNPs_73991 0 0 0 0 1 CD177 chr19:43858544 5'GT 43858544 Upstream 41bp
chr3 38317410 38317410 1 + C T SKCM 38317407 + 38317387 38317427 41 TGGGGTACTACGGCCTGAGCCTCCAAGTGGGGGACTTCGGC TGGGGTACTACGGCCTGAGCCTCTAAGTGGGGGACTTCGGC < 41bp 0.765807031092869 0.534232763833339 0.9689363 0.93887997 prediction 0.46314853451906 Functional Loss - SLC22A13 ENSG00000172940 CDS Human protein_coding chr3:38317407 chr3:38317410 stopgain 0.925 1 24 hm5C_associated_SNPs_73992 0 0 0 0 1 SLC22A13 chr3:38317373 3'AG 38317373 Downstream 38bp
chr11 4141133 4141133 1 + G A GBM 4141130 + 4141110 4141150 41 GAGAGTATATAACAACACAGCTCGATATGTGGATCAAGGTG GAGAGTATATAACAACACAGCTCAATATGTGGATCAAGGTG < 41bp 0.741779002349252 0.510212743717709 0.0946365 0.022895128 prediction 0.463132517263087 Functional Loss - RRM1 ENSG00000167325 CDS Human protein_coding chr11:4141130 chr11:4141133 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_73995 0 0 1 0 3 RRM1 chr11:4141075 3'AG 4141075 Downstream 59bp
chr11 4141133 4141133 1 + G A GBM 4141130 + 4141110 4141150 41 GAGAGTATATAACAACACAGCTCGATATGTGGATCAAGGTG GAGAGTATATAACAACACAGCTCAATATGTGGATCAAGGTG < 41bp 0.741779002349252 0.510212743717709 0.0946365 0.022895128 prediction 0.463132517263087 Functional Loss - RRM1 ENSG00000167325 CDS Human protein_coding chr11:4141130 chr11:4141133 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_73995 0 0 1 0 3 RRM1 chr11:4141158 5'GT 4141158 Upstream 26bp
chr11 4141133 4141133 1 + G A GBM 4141130 + 4141110 4141150 41 GAGAGTATATAACAACACAGCTCGATATGTGGATCAAGGTG GAGAGTATATAACAACACAGCTCAATATGTGGATCAAGGTG < 41bp 0.741779002349252 0.510212743717709 0.0946365 0.022895128 prediction 0.463132517263087 Functional Loss - RRM1 ENSG00000167325 CDS Human other chr11:4141130 chr11:4141133 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_73995 0 0 1 0 3 RRM1 chr11:4141200 5'GT 4141200 Upstream 68bp
chr2 113820044 113820044 1 + G T SKCM 113820041 + 113820021 113820061 41 TGCCGGCAGCCAGTGAACATCATGGAGCTCTATCTTGGTGC TGCCGGCAGCCAGTGAACATCATTGAGCTCTATCTTGGTGC < 41bp 0.731565300050885 0.329363484519531 0.70285 0.41774118 prediction 0.463130600101771 Functional Loss - IL36RN ENSG00000136695 CDS Human protein_coding chr2:113820041 chr2:113820044 nonsynonymous SNV 0.977 4 24 hm5C_associated_SNPs_73996 0 0 0 0 1 IL36RN chr2:113820030 3'AG 113820030 Downstream 15bp
chr12 119568633 119568633 1 + G T THYM 119568630 + 119568610 119568650 41 ATGCTTGGCTACCTGTCAGCCAGGGGTGTAGTAAGTATTCT ATGCTTGGCTACCTGTCAGCCAGTGGTGTAGTAAGTATTCT < 41bp 0.731564584703893 0.336612770217347 0.92079467 0.18871737 prediction 0.463129169407785 Functional Loss - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119568630 chr12:119568633 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_73997 0 0 0 0 1 SRRM4 chr12:119568639 5'GT 119568639 Upstream 7bp
chr1 99469999 99469999 1 - C T STAD 99470002 - 99469982 99470022 41 ACTCGCTGGCCGCCGGGGTCCCCGTGCTCGTGGTAAGCCCG ACTCGCTGGCCGCCGGGGTCCCCATGCTCGTGGTAAGCCCG < 41bp 0.737348793265892 0.505785744873653 0.036357403 0.17740577 prediction 0.463126096784477 Functional Loss - PLPPR5 ENSG00000117598 CDS Human protein_coding chr1:99470002 chr1:99469999 nonsynonymous SNV 0.960 3 24 hm5C_associated_SNPs_73998 0 0 0 0 1 PLPPR5 chr1:99469991 5'GT 99469991 Upstream 9bp
chr3 38454461 38454461 1 + T C STAD 38454460 + 38454440 38454480 41 TTCTCCCCCAGTATGCCAAACTCGAGCAGAGAATCTTGTCT TTCTCCCCCAGTATGCCAAACCCGAGCAGAGAATCTTGTCT < 41bp 0.731554960872783 0.479318186202708 0.46386844 0.3222369 prediction 0.463109921745567 Functional Loss - XYLB ENSG00000093217 CDS Human protein_coding chr3:38454460 chr3:38454461 nonsynonymous SNV 0.069 3 22 hm5C_associated_SNPs_74001 0 0 1 0 1 XYLB chr3:38454427 3'AG 38454427 Downstream 35bp
chr20 3627454 3627454 1 + G T THCA 3627452 + 3627432 3627472 41 AAGTCAGGAGCCGTGAGAAACCGGAAGCAGCAGCCCCCTGC AAGTCAGGAGCCGTGAGAAACCTGAAGCAGCAGCCCCCTGC < 41bp 0.731552399781153 0.398252012745822 0.8630513 0.13831669 prediction 0.463104799562306 Functional Loss - ATRN ENSG00000088812 CDS Human protein_coding chr20:3627452 chr20:3627454 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_74002 0 0 0 0 1 ATRN chr20:3627370 3'AG 3627370 Downstream 85bp
chr2 242138807 242138807 1 + C T UCEC 242138805 + 242138785 242138825 41 TGGGCTGTGCTCTGCTACTACGCCGAAGACCTGCGCCTGAA TGGGCTGTGCTCTGCTACTACGTCGAAGACCTGCGCCTGAA < 41bp 0.731548165938197 0.463977427124038 0.42668164 0.8648995 prediction 0.463096331876393 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242138805 chr2:242138807 nonsynonymous SNV 0.750 4 23 hm5C_associated_SNPs_74003 0 0 0 0 2 ANO7 chr2:242138731 3'AG 242138731 Downstream 77bp
chr2 242138807 242138807 1 + C T UCEC 242138805 + 242138785 242138825 41 TGGGCTGTGCTCTGCTACTACGCCGAAGACCTGCGCCTGAA TGGGCTGTGCTCTGCTACTACGTCGAAGACCTGCGCCTGAA < 41bp 0.731548165938197 0.463977427124038 0.42668164 0.8648995 prediction 0.463096331876393 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242138805 chr2:242138807 nonsynonymous SNV 0.750 4 23 hm5C_associated_SNPs_74003 0 0 0 0 2 ANO7 chr2:242138838 5'GT 242138838 Upstream 32bp
chr11 62549640 62549640 1 + G A UCEC 62549637 + 62549617 62549657 41 GCACCGGCTGCTGCAGGTGGCACGGAGCCTATTTCGTAATC GCACCGGCTGCTGCAGGTGGCACAGAGCCTATTTCGTAATC < 41bp 0.761512333734134 0.529971579467707 0.9009539 0.6730084 prediction 0.463081508532853 Functional Loss - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62549637 chr11:62549640 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_74007 0 0 0 0 1 TAF6L chr11:62549585 3'AG 62549585 Downstream 56bp
chr12 56630789 56630789 1 + G A COAD 56630786 + 56630766 56630806 41 TCTTCTGCCATGAGCTGCCCCACGAACTGGGTAGGAATGGC TCTTCTGCCATGAGCTGCCCCACAAACTGGGTAGGAATGGC < 41bp 0.743616586481435 0.512076020287859 0.05725801 0.024820656 prediction 0.463081132387152 Functional Loss - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56630786 chr12:56630789 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_74008 0 0 1 0 2 SLC39A5 chr12:56630715 3'AG 56630715 Downstream 75bp
chr12 56630789 56630789 1 + G A COAD 56630786 + 56630766 56630806 41 TCTTCTGCCATGAGCTGCCCCACGAACTGGGTAGGAATGGC TCTTCTGCCATGAGCTGCCCCACAAACTGGGTAGGAATGGC < 41bp 0.743616586481435 0.512076020287859 0.05725801 0.024820656 prediction 0.463081132387152 Functional Loss - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56630786 chr12:56630789 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_74008 0 0 1 0 2 SLC39A5 chr12:56630795 5'GT 56630795 Upstream 7bp
chr19 3543292 3543292 1 + G A UCEC 3543289 + 3543269 3543309 41 ACCAGCCATCAGGCAGGCCACACGCTGGAAGTACACGCCCA ACCAGCCATCAGGCAGGCCACACACTGGAAGTACACGCCCA < 41bp 0.766855532070304 0.535315035813951 0.0627816 0.024795234 prediction 0.463080992512706 Functional Loss - C19orf71 ENSG00000183397 CDS Human protein_coding chr19:3543289 chr19:3543292 nonsynonymous SNV 0.172 4 24 hm5C_associated_SNPs_74009 0 0 0 0 1 C19orf71 chr19:3543233 3'AG 3543233 Downstream 60bp
chr2 74425784 74425784 1 + C T BRCA 74425782 + 74425762 74425802 41 GCGGTCTATGGCTGCGACTTCTCTAATGTCTGCTTTGGCTG GCGGTCTATGGCTGCGACTTCTTTAATGTCTGCTTTGGCTG < 41bp 0.75226174162272 0.520721888630416 0.93082523 0.1759451 prediction 0.463079705984609 Functional Loss - MTHFD2 ENSG00000065911 CDS Human protein_coding chr2:74425782 chr2:74425784 synonymous SNV . 0 23 hm5C_associated_SNPs_74010 0 0 1 0 1 MTHFD2 chr2:74425869 5'GT 74425869 Upstream 86bp
chr15 68120183 68120183 1 + G C LUAD 68120179 + 68120159 68120199 41 TCCAACCGCTTCCCCGACGACGAGGACGCCCAAGAGGAGAC TCCAACCGCTTCCCCGACGACGAGCACGCCCAAGAGGAGAC < 41bp 0.73153888546978 0.447803500308311 0.32974178 0.10163239 prediction 0.463077770939559 Functional Loss - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68120179 chr15:68120183 nonsynonymous SNV 0.371 1 25 hm5C_associated_SNPs_74011 0 0 0 0 1 SKOR1 chr15:68120237 5'GT 68120237 Upstream 55bp
chr8 75276279 75276279 1 + G A BRCA 75276276 + 75276256 75276296 41 TCACCCTGGCAGACGTCTCACTCGCTGTCACATTGCATCGA TCACCCTGGCAGACGTCTCACTCACTGTCACATTGCATCGA < 41bp 0.744000527834774 0.512463214960347 0.031926364 0.017371804 prediction 0.463074625748854 Functional Loss - GDAP1 ENSG00000104381 CDS Human protein_coding chr8:75276276 chr8:75276279 nonsynonymous SNV 0.798 3 24 hm5C_associated_SNPs_74013 0 0 1 0 1 GDAP1 chr8:75276220 3'AG 75276220 Downstream 60bp
chr1 167663537 167663537 1 + A T LUSC 167663533 + 167663513 167663553 41 GGCAGTCATCTGCCCTGTTACAACAAGGTAAATTCTAGCTC GGCAGTCATCTGCCCTGTTACAACTAGGTAAATTCTAGCTC < 41bp 0.731536550065215 0.392428929058672 0.36583027 0.13779604 prediction 0.46307310013043 Functional Loss - RCSD1 ENSG00000198771 CDS Human protein_coding chr1:167663533 chr1:167663537 stopgain 0.960 1 25 hm5C_associated_SNPs_74015 0 0 1 0 1 RCSD1 chr1:167663539 5'GT 167663539 Upstream 3bp
chr9 77745523 77745523 1 + C T LUAD 77745520 + 77745500 77745540 41 ACCAATTGGTGGAAAGGCACCTCCAAAGGCAGGACTGGACT ACCAATTGGTGGAAAGGCACCTCTAAAGGCAGGACTGGACT < 41bp 0.731533445254784 0.495817919800542 0.9647661 0.9375599 prediction 0.463066890509567 Functional Loss - OSTF1 ENSG00000134996 CDS Human protein_coding chr9:77745520 chr9:77745523 synonymous SNV . 0 24 hm5C_associated_SNPs_74017 0 0 1 0 2 OSTF1 chr9:77745494 3'AG 77745494 Downstream 30bp
chr9 77745523 77745523 1 + C T LUAD 77745520 + 77745500 77745540 41 ACCAATTGGTGGAAAGGCACCTCCAAAGGCAGGACTGGACT ACCAATTGGTGGAAAGGCACCTCTAAAGGCAGGACTGGACT < 41bp 0.731533445254784 0.495817919800542 0.9647661 0.9375599 prediction 0.463066890509567 Functional Loss - OSTF1 ENSG00000134996 CDS Human protein_coding chr9:77745520 chr9:77745523 synonymous SNV . 0 24 hm5C_associated_SNPs_74017 0 0 1 0 2 OSTF1 chr9:77745557 5'GT 77745557 Upstream 35bp
chr17 48618244 48618244 1 + G A UCEC 48618241 + 48618221 48618261 41 CCCCTCAGGAACCGTCCTGTCCCGAAGCCAGCCCTGGGATC CCCCTCAGGAACCGTCCTGTCCCAAAGCCAGCCCTGGGATC < 41bp 0.783090840866203 0.551559050235131 0.33350083 0.16696167 prediction 0.463063581262142 Functional Loss - EPN3 ENSG00000049283 CDS Human protein_coding chr17:48618241 chr17:48618244 nonsynonymous SNV 0.989 0 24 hm5C_associated_SNPs_74018 0 0 0 0 1 EPN3 chr17:48618154 3'AG 48618154 Downstream 91bp
chr1 151238001 151238001 1 + T C LAML 151238000 + 151237980 151238020 41 CATCAGTTCTCCGATTTTGGCTGGTGAAGGTGGTGCCATGC CATCAGTTCTCCGATTTTGGCCGGTGAAGGTGGTGCCATGC < 41bp 0.767758379978774 0.536227402054699 0.5126139 0.50837415 prediction 0.46306195584815 Functional Loss - PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151238000 chr1:151238001 synonymous SNV . 0 22 hm5C_associated_SNPs_74020 0 0 1 0 1 PSMD4 chr1:151238085 5'GT 151238085 Upstream 85bp
chr1 32084905 32084905 1 + G A SKCM 32084902 + 32084882 32084922 41 AGTTTCTCCGCTATCTGTGGCGCGATTATCTGTACCCAAAA AGTTTCTCCGCTATCTGTGGCGCAATTATCTGTACCCAAAA < 41bp 0.763233096180324 0.531704692823592 0.1323945 0.03751585 prediction 0.463056806713463 Functional Loss - HCRTR1 ENSG00000121764 CDS Human protein_coding chr1:32084902 chr1:32084905 nonsynonymous SNV 0.962 1 24 hm5C_associated_SNPs_74022 0 0 0 0 1 HCRTR1 chr1:32084992 5'GT 32084992 Upstream 88bp
chr3 49059908 49059908 1 + G A BLCA 49059905 + 49059885 49059925 41 AGCTACAACAGCCGCGGCTTCATGATAAACGGAAACCGCGT AGCTACAACAGCCGCGGCTTCATAATAAACGGAAACCGCGT < 41bp 0.755060382441081 0.52353350876628 0.11877164 0.08926788 prediction 0.463053747349602 Functional Loss - NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49059905 chr3:49059908 nonsynonymous SNV 0.814 0 24 hm5C_associated_SNPs_74024 0 0 1 0 1 NDUFAF3 chr3:49059971 5'GT 49059971 Upstream 64bp
chr8 67408724 67408724 1 + G T LUAD 67408721 + 67408701 67408741 41 AGCTCTCAGCACCTCTTGACCAAGAATGTAAGGAAACTTTA AGCTCTCAGCACCTCTTGACCAATAATGTAAGGAAACTTTA < 41bp 0.731520992457998 0.348190007370304 0.17396745 0.28150636 prediction 0.463041984915997 Functional Loss - C8orf46 ENSG00000169085 CDS Human protein_coding chr8:67408721 chr8:67408724 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_74026 0 0 0 0 2 C8orf46 chr8:67408672 3'AG 67408672 Downstream 53bp
chr8 67408724 67408724 1 + G T LUAD 67408721 + 67408701 67408741 41 AGCTCTCAGCACCTCTTGACCAAGAATGTAAGGAAACTTTA AGCTCTCAGCACCTCTTGACCAATAATGTAAGGAAACTTTA < 41bp 0.731520992457998 0.348190007370304 0.17396745 0.28150636 prediction 0.463041984915997 Functional Loss - C8orf46 ENSG00000169085 CDS Human protein_coding chr8:67408721 chr8:67408724 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_74026 0 0 0 0 2 C8orf46 chr8:67408727 5'GT 67408727 Upstream 4bp
chr1 215792534 215792534 1 + T C STAD 215792533 + 215792513 215792553 41 AAGAAGAGCTACTCAAATTACTCGATCAATGTGATTTGAGC AAGAAGAGCTACTCAAATTACCCGATCAATGTGATTTGAGC < 41bp 0.815805317761802 0.584286874263433 0.55344754 0.25314772 prediction 0.463036886996739 Functional Loss - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215792533 chr1:215792534 nonsynonymous SNV 0.838 4 22 hm5C_associated_SNPs_74029 0 0 0 0 3 KCTD3 chr1:215792495 3'AG 215792495 Downstream 40bp
chr1 215792534 215792534 1 + T C STAD 215792533 + 215792513 215792553 41 AAGAAGAGCTACTCAAATTACTCGATCAATGTGATTTGAGC AAGAAGAGCTACTCAAATTACCCGATCAATGTGATTTGAGC < 41bp 0.815805317761802 0.584286874263433 0.55344754 0.25314772 prediction 0.463036886996739 Functional Loss - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215792533 chr1:215792534 nonsynonymous SNV 0.838 4 22 hm5C_associated_SNPs_74029 0 0 0 0 3 KCTD3 chr1:215792501 3'AG 215792501 Downstream 34bp
chr1 215792534 215792534 1 + T C STAD 215792533 + 215792513 215792553 41 AAGAAGAGCTACTCAAATTACTCGATCAATGTGATTTGAGC AAGAAGAGCTACTCAAATTACCCGATCAATGTGATTTGAGC < 41bp 0.815805317761802 0.584286874263433 0.55344754 0.25314772 prediction 0.463036886996739 Functional Loss - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215792533 chr1:215792534 nonsynonymous SNV 0.838 4 22 hm5C_associated_SNPs_74029 0 0 0 0 3 KCTD3 chr1:215792633 5'GT 215792633 Upstream 100bp
chr19 49686349 49686349 1 + G A STAD 49686346 + 49686326 49686366 41 TGCTGGCAGATGTATCTGCTCTCGGACAAGGCCACCTCGCC TGCTGGCAGATGTATCTGCTCTCAGACAAGGCCACCTCGCC < 41bp 0.772454717782017 0.540937642538914 0.2070424 0.077579916 prediction 0.463034150486207 Functional Loss - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49686346 chr19:49686349 synonymous SNV . 0 24 hm5C_associated_SNPs_74030 0 0 1 0 1 TRPM4 chr19:49686335 3'AG 49686335 Downstream 15bp
chr19 55112185 55112185 1 + C T KIRC 55112183 + 55112163 55112203 41 GCCTCACACCCCCAGGATTACACAGTGGAGAATCTCATCCG GCCTCACACCCCCAGGATTACATAGTGGAGAATCTCATCCG < 41bp 0.762861382554046 0.531348908210905 0.31990033 0.2950114 prediction 0.463024948686281 Functional Loss - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55112183 chr19:55112185 nonsynonymous SNV 0.018 2 23 hm5C_associated_SNPs_74035 0 0 0 0 1 LILRA1 chr19:55112164 3'AG 55112164 Downstream 22bp
chr1 2493144 2493144 1 + G T LUAD 2493141 + 2493121 2493161 41 GCTGGTGACGAAGGCCGGAGCTGGGACCAGCAGCTCCCACT GCTGGTGACGAAGGCCGGAGCTGTGACCAGCAGCTCCCACT < 41bp 0.925194843625468 0.693683439330916 0.8959414 0.77046055 prediction 0.463022808589104 Functional Loss - TNFRSF14 ENSG00000157873 CDS Human protein_coding chr1:2493141 chr1:2493144 nonsynonymous SNV 0.060 3 24 hm5C_associated_SNPs_74036 0 0 1 0 1 TNFRSF14 chr1:2493112 3'AG 2493112 Downstream 33bp
chr19 7595356 7595356 1 + C T LGG 7595354 + 7595334 7595374 41 ATGGTGCTCAGCCTCTTCATCGCGCTCATCACCGGCGCCTA ATGGTGCTCAGCCTCTTCATCGTGCTCATCACCGGCGCCTA < 41bp 0.731510083965629 0.47367633630564 0.33973706 0.25249234 prediction 0.463020167931258 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7595354 chr19:7595356 nonsynonymous SNV 0.581 4 23 hm5C_associated_SNPs_74038 0 0 0 0 1 MCOLN1 chr19:7595387 5'GT 7595387 Upstream 32bp
chr15 101569240 101569240 1 + C T CESC 101569238 + 101569218 101569258 41 GCCTGAGGAACCTCTACTTCCTCGACCCTATTTGGCTCTCC GCCTGAGGAACCTCTACTTCCTTGACCCTATTTGGCTCTCC < 41bp 0.73150901687912 0.435677115613851 0.1671043 0.07119602 prediction 0.463018033758241 Functional Loss - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101569238 chr15:101569240 synonymous SNV . 0 23 hm5C_associated_SNPs_74040 0 0 0 0 1 LRRK1 chr15:101569161 3'AG 101569161 Downstream 80bp
chr16 67681469 67681469 1 + G A SKCM 67681466 + 67681446 67681486 41 GACACTCAAGCTCTGGGCTGCGGGAGCTCAGCCTCGCGGGG GACACTCAAGCTCTGGGCTGCGGAAGCTCAGCCTCGCGGGG < 41bp 0.759595464512463 0.528087388775789 0.9328551 0.90693665 prediction 0.463016151473348 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67681466 chr16:67681469 nonsynonymous SNV 0.912 0 24 hm5C_associated_SNPs_74041 0 0 0 0 2 CARMIL2 chr16:67681411 3'AG 67681411 Downstream 59bp
chr16 67681469 67681469 1 + G A SKCM 67681466 + 67681446 67681486 41 GACACTCAAGCTCTGGGCTGCGGGAGCTCAGCCTCGCGGGG GACACTCAAGCTCTGGGCTGCGGAAGCTCAGCCTCGCGGGG < 41bp 0.759595464512463 0.528087388775789 0.9328551 0.90693665 prediction 0.463016151473348 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67681466 chr16:67681469 nonsynonymous SNV 0.912 0 24 hm5C_associated_SNPs_74041 0 0 0 0 2 CARMIL2 chr16:67681505 5'GT 67681505 Upstream 37bp
chr17 15641388 15641388 1 + G A SKCM 15641385 + 15641365 15641405 41 TGGACAAAATATAGGAGCACCAAGAAGGTAACATGGGGAGG TGGACAAAATATAGGAGCACCAAAAAGGTAACATGGGGAGG < 41bp 0.735339426833301 0.503834765987922 0.24048886 0.17297372 prediction 0.463009321690757 Functional Loss - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15641385 chr17:15641388 synonymous SNV . 0 24 hm5C_associated_SNPs_74045 0 0 0 0 2 TBC1D26 chr17:15641311 3'AG 15641311 Downstream 78bp
chr17 15641388 15641388 1 + G A SKCM 15641385 + 15641365 15641405 41 TGGACAAAATATAGGAGCACCAAGAAGGTAACATGGGGAGG TGGACAAAATATAGGAGCACCAAAAAGGTAACATGGGGAGG < 41bp 0.735339426833301 0.503834765987922 0.24048886 0.17297372 prediction 0.463009321690757 Functional Loss - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15641385 chr17:15641388 synonymous SNV . 0 24 hm5C_associated_SNPs_74045 0 0 0 0 2 TBC1D26 chr17:15641391 5'GT 15641391 Upstream 4bp
chr16 30035069 30035069 1 + C T STAD 30035067 + 30035047 30035087 41 GCACCCAGACCCAAGCGTGCCACGGCGTCAGCCCTGGGGAC GCACCCAGACCCAAGCGTGCCATGGCGTCAGCCCTGGGGAC < 41bp 0.785629358750885 0.554125480415615 0.13154009 0.20966631 prediction 0.46300775667054 Functional Loss - C16orf92 ENSG00000167194 CDS Human protein_coding chr16:30035067 chr16:30035069 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_74047 0 0 0 0 1 C16orf92 chr16:30035048 3'AG 30035048 Downstream 22bp
chr17 47295131 47295131 1 + C T STAD 47295129 + 47295109 47295149 41 CATGCATATGGAGAAGGTGGCCCGAAGGGAGATCGGCACCT CATGCATATGGAGAAGGTGGCCTGAAGGGAGATCGGCACCT < 41bp 0.731500941366326 0.454056237474294 0.2847305 0.18657264 prediction 0.463001882732652 Functional Loss - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47295129 chr17:47295131 stopgain 0.984 1 23 hm5C_associated_SNPs_74048 0 0 0 0 1 ABI3 chr17:47295101 3'AG 47295101 Downstream 31bp
chr17 47295132 47295132 1 + G A UCEC 47295129 + 47295109 47295149 41 CATGCATATGGAGAAGGTGGCCCGAAGGGAGATCGGCACCT CATGCATATGGAGAAGGTGGCCCAAAGGGAGATCGGCACCT < 41bp 0.731500941366326 0.492789808129825 0.2847305 0.33688658 prediction 0.463001882732652 Functional Loss - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47295129 chr17:47295132 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_74049 0 0 0 0 1 ABI3 chr17:47295101 3'AG 47295101 Downstream 32bp
chr21 38092132 38092132 1 + C T GBM 38092130 + 38092110 38092150 41 CTTCCACGGCAGGTGGAGCTCACGGGCAACAGTATTTATGA CTTCCACGGCAGGTGGAGCTCATGGGCAACAGTATTTATGA < 41bp 0.820401183508558 0.588903004622498 0.6496182 0.5581312 prediction 0.462996357772119 Functional Loss - SIM2 ENSG00000159263 CDS Human protein_coding chr21:38092130 chr21:38092132 nonsynonymous SNV 0.912 4 23 hm5C_associated_SNPs_74053 0 0 0 0 2 SIM2 chr21:38092122 3'AG 38092122 Downstream 11bp
chr21 38092132 38092132 1 + C T GBM 38092130 + 38092110 38092150 41 CTTCCACGGCAGGTGGAGCTCACGGGCAACAGTATTTATGA CTTCCACGGCAGGTGGAGCTCATGGGCAACAGTATTTATGA < 41bp 0.820401183508558 0.588903004622498 0.6496182 0.5581312 prediction 0.462996357772119 Functional Loss - SIM2 ENSG00000159263 CDS Human protein_coding chr21:38092130 chr21:38092132 nonsynonymous SNV 0.912 4 23 hm5C_associated_SNPs_74053 0 0 0 0 2 SIM2 chr21:38092230 5'GT 38092230 Upstream 99bp
chr19 50946841 50946841 1 + G A SKCM 50946838 + 50946818 50946858 41 GCTGCCTATGAAGTAGCTGTCAAGGATGAGAAGTGTTTCAC GCTGCCTATGAAGTAGCTGTCAAAGATGAGAAGTGTTTCAC < 41bp 0.757525980463315 0.526031289711615 0.9032293 0.81782764 prediction 0.4629893815034 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50946838 chr19:50946841 synonymous SNV . 0 24 hm5C_associated_SNPs_74054 0 0 0 0 2 MYBPC2 chr19:50946751 3'AG 50946751 Downstream 91bp
chr19 50946841 50946841 1 + G A SKCM 50946838 + 50946818 50946858 41 GCTGCCTATGAAGTAGCTGTCAAGGATGAGAAGTGTTTCAC GCTGCCTATGAAGTAGCTGTCAAAGATGAGAAGTGTTTCAC < 41bp 0.757525980463315 0.526031289711615 0.9032293 0.81782764 prediction 0.4629893815034 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50946838 chr19:50946841 synonymous SNV . 0 24 hm5C_associated_SNPs_74054 0 0 0 0 2 MYBPC2 chr19:50946875 5'GT 50946875 Upstream 35bp
chr15 29406180 29406180 1 + C T UCEC 29406178 + 29406158 29406198 41 AGAGCGTGGTGGCCACAGCCCACGAGAAGATAGTCCAAGCT AGAGCGTGGTGGCCACAGCCCATGAGAAGATAGTCCAAGCT < 41bp 0.829190346646138 0.597696009374283 0.30817717 0.09588686 prediction 0.462988674543708 Functional Loss - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29406178 chr15:29406180 synonymous SNV . 0 23 hm5C_associated_SNPs_74055 0 0 1 0 1 APBA2 chr15:29406219 5'GT 29406219 Upstream 40bp
chr20 42089433 42089433 1 + G T BLCA 42089431 + 42089411 42089451 41 AATCTAAGCCCAAGTCTGATCGGGGCTCCCATTCACATTCT AATCTAAGCCCAAGTCTGATCGTGGCTCCCATTCACATTCT < 41bp 0.891533138602182 0.660040048776689 0.91317356 0.41129917 prediction 0.462986179650988 Functional Loss - SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089431 chr20:42089433 synonymous SNV . 0 23 hm5C_associated_SNPs_74057 0 0 0 0 1 SRSF6 chr20:42089343 3'AG 42089343 Downstream 91bp
chr1 209880108 209880108 1 + A C SKCM 209880107 + 209880087 209880127 41 TCAGCACACTACATTGCTGGCACCATGGAAGACATGACCTT TCAGCACACTACATTGCTGGCCCCATGGAAGACATGACCTT < 41bp 0.731492875127237 0.47046601398978 0.18180776 0.3016124 prediction 0.462985750254474 Functional Loss - HSD11B1 ENSG00000117594 CDS Human protein_coding chr1:209880107 chr1:209880108 nonsynonymous SNV 0.992 1 22 hm5C_associated_SNPs_74058 0 0 0 0 2 HSD11B1 chr1:209880054 3'AG 209880054 Downstream 55bp
chr1 209880108 209880108 1 + A C SKCM 209880107 + 209880087 209880127 41 TCAGCACACTACATTGCTGGCACCATGGAAGACATGACCTT TCAGCACACTACATTGCTGGCCCCATGGAAGACATGACCTT < 41bp 0.731492875127237 0.47046601398978 0.18180776 0.3016124 prediction 0.462985750254474 Functional Loss - HSD11B1 ENSG00000117594 CDS Human protein_coding chr1:209880107 chr1:209880108 nonsynonymous SNV 0.992 1 22 hm5C_associated_SNPs_74058 0 0 0 0 2 HSD11B1 chr1:209880165 5'GT 209880165 Upstream 58bp
chr1 158325709 158325709 1 + G T LUAD 158325706 + 158325686 158325726 41 TCTCAGGATTCTACCCAAAGCCCGTGTGGGTGATGTGGATG TCTCAGGATTCTACCCAAAGCCCTTGTGGGTGATGTGGATG < 41bp 0.731490125449553 0.379509854431806 0.082690865 0.07774952 prediction 0.462980250899107 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325706 chr1:158325709 nonsynonymous SNV 0.985 2 24 hm5C_associated_SNPs_74062 0 0 0 0 2 CD1E chr1:158325730 5'GT 158325730 Upstream 22bp
chr1 158325709 158325709 1 + G T LUAD 158325706 + 158325686 158325726 41 TCTCAGGATTCTACCCAAAGCCCGTGTGGGTGATGTGGATG TCTCAGGATTCTACCCAAAGCCCTTGTGGGTGATGTGGATG < 41bp 0.731490125449553 0.379509854431806 0.082690865 0.07774952 prediction 0.462980250899107 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325706 chr1:158325709 nonsynonymous SNV 0.985 2 24 hm5C_associated_SNPs_74062 0 0 0 0 2 CD1E chr1:158325791 5'GT 158325791 Upstream 83bp
chr1 228362690 228362690 1 + C T COAD 228362688 + 228362668 228362708 41 CCCTGGTGCCCGGGGGCCGGCTCGGGGACTTGTGGGATTAT CCCTGGTGCCCGGGGGCCGGCTTGGGGACTTGTGGGATTAT < 41bp 0.731486217305509 0.47577345090277 0.79763234 0.8952626 prediction 0.462972434611018 Functional Loss - IBA57 ENSG00000181873 CDS Human protein_coding chr1:228362688 chr1:228362690 synonymous SNV . 0 23 hm5C_associated_SNPs_74063 0 0 1 0 1 IBA57 chr1:228362730 5'GT 228362730 Upstream 41bp
chr4 169099083 169099083 1 + A C rs77163954 169099079 + 169099059 169099099 41 CAGCAGAAGACGGGGGAGCACAAAACCATGCTGCAAATGAT CAGCAGAAGACGGGGGAGCACAAACCCATGCTGCAAATGAT < 41bp 0.731485455477961 0.322933531490775 0.4144856 0.12439492 prediction 0.462970910955923 Functional Loss - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169099079 chr4:169099083 nonsynonymous SNV 0.990 1 25 hm5C_associated_SNPs_74064 0 0 0 0 2 ANXA10 chr4:169099041 3'AG 169099041 Downstream 43bp
chr4 169099083 169099083 1 + A C rs77163954 169099079 + 169099059 169099099 41 CAGCAGAAGACGGGGGAGCACAAAACCATGCTGCAAATGAT CAGCAGAAGACGGGGGAGCACAAACCCATGCTGCAAATGAT < 41bp 0.731485455477961 0.322933531490775 0.4144856 0.12439492 prediction 0.462970910955923 Functional Loss - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169099079 chr4:169099083 nonsynonymous SNV 0.990 1 25 hm5C_associated_SNPs_74064 0 0 0 0 2 ANXA10 chr4:169099134 5'GT 169099134 Upstream 52bp
chr2 1481355 1481355 1 + G A rs28910598 1481352 + 1481332 1481372 41 GCCGTGTACCAGGAGGCGCGCAAGGTCGTGGGCGCTCTGCA GCCGTGTACCAGGAGGCGCGCAAAGTCGTGGGCGCTCTGCA < 41bp 0.731473499809756 0.49034757458359 0.89962995 0.34131515 prediction 0.462946999619512 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1481352 chr2:1481355 synonymous SNV . 0 24 hm5C_associated_SNPs_74068 1 0 0 0 1 TPO chr2:1481376 5'GT 1481376 Upstream 22bp
chr7 156451171 156451171 1 + G T BLCA 156451168 + 156451148 156451188 41 TGTTTTAGAATCCAAGCCTACTGGAGAGGATGTGTTGTTAG TGTTTTAGAATCCAAGCCTACTGTAGAGGATGTGTTGTTAG < 41bp 0.731472580016475 0.359173039839752 0.088733196 0.067964405 prediction 0.462945160032949 Functional Loss - RNF32 ENSG00000105982 CDS Human protein_coding chr7:156451168 chr7:156451171 nonsynonymous SNV 0.925 4 24 hm5C_associated_SNPs_74069 0 0 0 1 1 RNF32 chr7:156451156 3'AG 156451156 Downstream 16bp
chr12 50348049 50348049 1 + G A SKCM 50348046 + 50348026 50348066 41 ATGAGCGCCGCGGAGAGAACCCGGGCACCCCTGCTCTCTCC ATGAGCGCCGCGGAGAGAACCCGAGCACCCCTGCTCTCTCC < 41bp 0.777805528507564 0.54633448797461 0.94104385 0.20404297 prediction 0.462942081065908 Functional Loss - AQP2 ENSG00000167580 CDS Human protein_coding chr12:50348046 chr12:50348049 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_74070 0 0 0 0 1 AQP2 chr12:50348102 5'GT 50348102 Upstream 54bp
chr12 132281820 132281820 1 + C T STAD 132281818 + 132281798 132281838 41 ACCCAGCAAGCAGGCAGCGCCCCGGCCCGCGGCCCCCGCGG ACCCAGCAAGCAGGCAGCGCCCTGGCCCGCGGCCCCCGCGG < 41bp 0.742061194105033 0.510590524322219 0.6317462 0.4053654 prediction 0.46294133956563 Functional Loss - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132281818 chr12:132281820 nonsynonymous SNV 0.008 2 23 hm5C_associated_SNPs_74071 0 0 1 0 2 SFSWAP chr12:132281723 3'AG 132281723 Downstream 98bp
chr12 132281820 132281820 1 + C T STAD 132281818 + 132281798 132281838 41 ACCCAGCAAGCAGGCAGCGCCCCGGCCCGCGGCCCCCGCGG ACCCAGCAAGCAGGCAGCGCCCTGGCCCGCGGCCCCCGCGG < 41bp 0.742061194105033 0.510590524322219 0.6317462 0.4053654 prediction 0.46294133956563 Functional Loss - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132281818 chr12:132281820 nonsynonymous SNV 0.008 2 23 hm5C_associated_SNPs_74071 0 0 1 0 2 SFSWAP chr12:132281905 5'GT 132281905 Upstream 86bp
chr19 34859589 34859589 1 + G A CESC 34859586 + 34859566 34859606 41 GAGGTCAACAAGGTTCTGGACAAGATGAAGTCTTTCTGCCA GAGGTCAACAAGGTTCTGGACAAAATGAAGTCTTTCTGCCA < 41bp 0.758518160829264 0.527048631427951 0.43038088 0.41949457 prediction 0.462939058802626 Functional Loss - GPI ENSG00000105220 CDS Human protein_coding chr19:34859586 chr19:34859589 synonymous SNV . 0 24 hm5C_associated_SNPs_74072 0 0 1 0 1 GPI chr19:34859607 5'GT 34859607 Upstream 19bp
chr14 70235601 70235601 1 + G A READ 70235598 + 70235578 70235618 41 CCGTTTTAGTAGTCGCAGACCTCGAAATGATAGACGGTATG CCGTTTTAGTAGTCGCAGACCTCAAAATGATAGACGGTATG < 41bp 0.738578504732206 0.507109251141124 0.67300355 0.12330294 prediction 0.462938507182163 Functional Loss - SRSF5 ENSG00000100650 CDS Human protein_coding chr14:70235598 chr14:70235601 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_74073 0 0 1 0 1 SRSF5 chr14:70235613 5'GT 70235613 Upstream 13bp
chr4 111464012 111464012 1 + C T COAD 111464010 + 111463990 111464030 41 TATGAAGTAGCAACTTGGGACTCGATAGCTACAGCGCTCTC TATGAAGTAGCAACTTGGGACTTGATAGCTACAGCGCTCTC < 41bp 0.731467011343897 0.43977497189917 0.7292304 0.09742153 prediction 0.462934022687795 Functional Loss - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111464010 chr4:111464012 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_74074 0 0 0 0 1 ENPEP chr4:111464043 5'GT 111464043 Upstream 32bp
chr1 154227704 154227704 1 + A T GBM 154227700 + 154227680 154227720 41 CCCTCTCAATGAAACGGTATCTGCAGCTTCCTTACTGACGA CCCTCTCAATGAAACGGTATCTGCTGCTTCCTTACTGACGA < 41bp 0.731464847408871 0.398363342946313 0.05227211 0.026793003 prediction 0.462929694817742 Functional Loss - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154227700 chr1:154227704 synonymous SNV . 0 25 hm5C_associated_SNPs_74075 0 0 1 0 1 UBAP2L chr1:154227802 5'GT 154227802 Upstream 99bp
chr1 1563724 1563724 1 + T C STAD 1563723 + 1563703 1563743 41 AGGAGGACGGCTTCACGGCGCTGCATCTGGCTGCCCTCAAC AGGAGGACGGCTTCACGGCGCCGCATCTGGCTGCCCTCAAC < 41bp 0.759807874658704 0.528345636165112 0.10833117 0.117204845 prediction 0.462924476987184 Functional Loss - MIB2 ENSG00000197530 CDS Human protein_coding chr1:1563723 chr1:1563724 nonsynonymous SNV 0.097 4 22 hm5C_associated_SNPs_74077 0 0 1 0 2 MIB2 chr1:1563653 3'AG 1563653 Downstream 72bp
chr1 1563724 1563724 1 + T C STAD 1563723 + 1563703 1563743 41 AGGAGGACGGCTTCACGGCGCTGCATCTGGCTGCCCTCAAC AGGAGGACGGCTTCACGGCGCCGCATCTGGCTGCCCTCAAC < 41bp 0.759807874658704 0.528345636165112 0.10833117 0.117204845 prediction 0.462924476987184 Functional Loss - MIB2 ENSG00000197530 CDS Human protein_coding chr1:1563723 chr1:1563724 nonsynonymous SNV 0.097 4 22 hm5C_associated_SNPs_74077 0 0 1 0 2 MIB2 chr1:1563779 5'GT 1563779 Upstream 56bp
chr16 5128824 5128824 1 + G T LUAD 5128822 + 5128802 5128842 41 AGCGGGATGCTGGGAGCGGGCTGGTGACGCGTCTCCGTGAG AGCGGGATGCTGGGAGCGGGCTTGTGACGCGTCTCCGTGAG < 41bp 0.906284526817855 0.674827721705519 0.41527998 0.2665615 prediction 0.462913610224673 Functional Loss - ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128822 chr16:5128824 synonymous SNV . 0 23 hm5C_associated_SNPs_74082 0 0 1 0 2 ALG1 chr16:5128758 3'AG 5128758 Downstream 67bp
chr16 5128824 5128824 1 + G T LUAD 5128822 + 5128802 5128842 41 AGCGGGATGCTGGGAGCGGGCTGGTGACGCGTCTCCGTGAG AGCGGGATGCTGGGAGCGGGCTTGTGACGCGTCTCCGTGAG < 41bp 0.906284526817855 0.674827721705519 0.41527998 0.2665615 prediction 0.462913610224673 Functional Loss - ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128822 chr16:5128824 synonymous SNV . 0 23 hm5C_associated_SNPs_74082 0 0 1 0 2 ALG1 chr16:5128879 5'GT 5128879 Upstream 56bp
chr19 47878770 47878770 1 + G T ACC 47878768 + 47878748 47878788 41 TGGCTGGGGCCCAGGCCGCGCAGGTAGGGGACAGCTACAGT TGGCTGGGGCCCAGGCCGCGCATGTAGGGGACAGCTACAGT < 41bp 0.731454087543381 0.371847467933464 0.40463853 0.35552564 prediction 0.462908175086761 Functional Loss - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47878768 chr19:47878770 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_74083 0 0 1 0 1 DHX34 chr19:47878723 3'AG 47878723 Downstream 48bp
chr11 6291417 6291417 1 + G A KIRP 6291414 + 6291394 6291434 41 GCAGGCACGAGTGTGGCAGACGCGCTCCCACGCGGCTCGCG GCAGGCACGAGTGTGGCAGACGCACTCCCACGCGGCTCGCG < 41bp 0.785653745105434 0.554209189260578 0.5422041 0.36922932 prediction 0.462889111689712 Functional Loss - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6291414 chr11:6291417 nonsynonymous SNV 0.970 4 24 hm5C_associated_SNPs_74088 0 0 0 0 1 CCKBR chr11:6291318 3'AG 6291318 Downstream 100bp
chr1 38158641 38158641 1 + C T HNSC 38158639 + 38158619 38158659 41 TCCTCAAGGAGGTGGATAACCTCTACAACATCGAGATCCTG TCCTCAAGGAGGTGGATAACCTTTACAACATCGAGATCCTG < 41bp 0.73144448563315 0.438890991410445 0.8501435 0.117578566 prediction 0.462888971266299 Functional Loss - CDCA8 ENSG00000134690 CDS Human protein_coding chr1:38158639 chr1:38158641 synonymous SNV . 0 23 hm5C_associated_SNPs_74089 0 0 1 0 2 CDCA8 chr1:38158577 3'AG 38158577 Downstream 65bp
chr1 38158641 38158641 1 + C T HNSC 38158639 + 38158619 38158659 41 TCCTCAAGGAGGTGGATAACCTCTACAACATCGAGATCCTG TCCTCAAGGAGGTGGATAACCTTTACAACATCGAGATCCTG < 41bp 0.73144448563315 0.438890991410445 0.8501435 0.117578566 prediction 0.462888971266299 Functional Loss - CDCA8 ENSG00000134690 CDS Human protein_coding chr1:38158639 chr1:38158641 synonymous SNV . 0 23 hm5C_associated_SNPs_74089 0 0 1 0 2 CDCA8 chr1:38158705 5'GT 38158705 Upstream 65bp
chr15 85467298 85467298 1 + C T SKCM 85467296 + 85467276 85467316 41 GTTGTCATGACCGGAGGTTACGCCACCATTGCTGGCAGCCT GTTGTCATGACCGGAGGTTACGTCACCATTGCTGGCAGCCT < 41bp 0.850137219683471 0.618693812679057 0.79701424 0.5737474 prediction 0.462886814008828 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85467296 chr15:85467298 nonsynonymous SNV 0.881 4 23 hm5C_associated_SNPs_74091 0 0 0 0 2 SLC28A1 chr15:85467216 3'AG 85467216 Downstream 83bp
chr15 85467298 85467298 1 + C T SKCM 85467296 + 85467276 85467316 41 GTTGTCATGACCGGAGGTTACGCCACCATTGCTGGCAGCCT GTTGTCATGACCGGAGGTTACGTCACCATTGCTGGCAGCCT < 41bp 0.850137219683471 0.618693812679057 0.79701424 0.5737474 prediction 0.462886814008828 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85467296 chr15:85467298 nonsynonymous SNV 0.881 4 23 hm5C_associated_SNPs_74091 0 0 0 0 2 SLC28A1 chr15:85467341 5'GT 85467341 Upstream 44bp
chr18 28983562 28983562 1 + G A SKCM 28983559 + 28983539 28983579 41 CTGTGTTGTTGATGAGCCACCAGGAATAGCTGACATGTGGG CTGTGTTGTTGATGAGCCACCAGAAATAGCTGACATGTGGG < 41bp 0.731441422748803 0.495994160989477 0.7485392 0.2960974 prediction 0.462882845497607 Functional Loss - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28983559 chr18:28983562 nonsynonymous SNV 0.060 0 24 hm5C_associated_SNPs_74093 0 0 0 0 1 DSG4 chr18:28983597 5'GT 28983597 Upstream 36bp
chr7 55229255 55229255 1 + G A rs2227983 55229252 + 55229232 55229272 41 GGGCTGCTGGGGCCCGGAGCCCAGGGACTGCGTCTCTTGCC GGGCTGCTGGGGCCCGGAGCCCAAGGACTGCGTCTCTTGCC < 41bp 0.74841351569392 0.516975456282507 0.9018718 0.45080572 prediction 0.462876118822828 Functional Loss - EGFR ENSG00000146648 CDS Human protein_coding chr7:55229252 chr7:55229255 nonsynonymous SNV 0.247 0 24 hm5C_associated_SNPs_74095 2 0 1 0 2 EGFR chr7:55229192 3'AG 55229192 Downstream 64bp
chr7 55229255 55229255 1 + G A rs2227983 55229252 + 55229232 55229272 41 GGGCTGCTGGGGCCCGGAGCCCAGGGACTGCGTCTCTTGCC GGGCTGCTGGGGCCCGGAGCCCAAGGACTGCGTCTCTTGCC < 41bp 0.74841351569392 0.516975456282507 0.9018718 0.45080572 prediction 0.462876118822828 Functional Loss - EGFR ENSG00000146648 CDS Human protein_coding chr7:55229252 chr7:55229255 nonsynonymous SNV 0.247 0 24 hm5C_associated_SNPs_74095 2 0 1 0 2 EGFR chr7:55229324 5'GT 55229324 Upstream 70bp
chr10 23408343 23408343 1 + C T HNSC 23408341 + 23408321 23408361 41 ATCCTGAGACGTCTGGATACCTCGTTAGGATCAGCTCGCAC ATCCTGAGACGTCTGGATACCTTGTTAGGATCAGCTCGCAC < 41bp 0.827598183004282 0.596160317530354 0.06275129 0.084079444 prediction 0.462875730947856 Functional Loss - MSRB2 ENSG00000148450 CDS Human protein_coding chr10:23408341 chr10:23408343 nonsynonymous SNV 0.073 4 23 hm5C_associated_SNPs_74096 0 0 1 0 1 MSRB2 chr10:23408380 5'GT 23408380 Upstream 38bp
chr17 72351406 72351406 1 + C T rs2271536 72351404 + 72351384 72351424 41 CCCGTGGGCCCCGCCTGCCCCACGGCACAAGCACCCATGGC CCCGTGGGCCCCGCCTGCCCCATGGCACAAGCACCCATGGC < 41bp 0.74241696723045 0.510982004758413 0.17748713 0.33916384 prediction 0.462869924944074 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72351404 chr17:72351406 synonymous SNV . 0 23 hm5C_associated_SNPs_74098 0 0 0 0 1 KIF19 chr17:72351321 3'AG 72351321 Downstream 86bp
chr8 133790104 133790104 1 + A C READ 133790100 + 133790080 133790120 41 TAAAAAGCCCCCAAATCGCCCTGGAATCACTTTTGAGATTG TAAAAAGCCCCCAAATCGCCCTGGCATCACTTTTGAGATTG < 41bp 0.731427447644464 0.325275858011809 0.5159533 0.30821258 prediction 0.462854895288929 Functional Loss - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133790100 chr8:133790104 synonymous SNV . 0 25 hm5C_associated_SNPs_74102 0 0 0 3 2 PHF20L1 chr8:133790038 3'AG 133790038 Downstream 67bp
chr8 133790104 133790104 1 + A C READ 133790100 + 133790080 133790120 41 TAAAAAGCCCCCAAATCGCCCTGGAATCACTTTTGAGATTG TAAAAAGCCCCCAAATCGCCCTGGCATCACTTTTGAGATTG < 41bp 0.731427447644464 0.325275858011809 0.5159533 0.30821258 prediction 0.462854895288929 Functional Loss - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133790100 chr8:133790104 synonymous SNV . 0 25 hm5C_associated_SNPs_74102 0 0 0 3 2 PHF20L1 chr8:133790157 5'GT 133790157 Upstream 54bp
chr3 52538836 52538836 1 + C T COAD 52538834 + 52538814 52538854 41 GGACACAAGGACCCAACAAACACGAAGGTGGTGGACGCTGG GGACACAAGGACCCAACAAACATGAAGGTGGTGGACGCTGG < 41bp 0.781932296759784 0.550505876027699 0.11732131 0.26676446 prediction 0.462852841464171 Functional Loss - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52538834 chr3:52538836 stopgain 0.470 0 23 hm5C_associated_SNPs_74103 0 0 0 0 2 STAB1 chr3:52538755 3'AG 52538755 Downstream 82bp
chr3 52538836 52538836 1 + C T COAD 52538834 + 52538814 52538854 41 GGACACAAGGACCCAACAAACACGAAGGTGGTGGACGCTGG GGACACAAGGACCCAACAAACATGAAGGTGGTGGACGCTGG < 41bp 0.781932296759784 0.550505876027699 0.11732131 0.26676446 prediction 0.462852841464171 Functional Loss - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52538834 chr3:52538836 stopgain 0.470 0 23 hm5C_associated_SNPs_74103 0 0 0 0 2 STAB1 chr3:52538892 5'GT 52538892 Upstream 57bp
chr9 140109063 140109063 1 + C T BRCA 140109061 + 140109041 140109081 41 GTGCTGATTCAGCCCTCCAACTCGGCTGCCCATGTCCAGCG GTGCTGATTCAGCCCTCCAACTTGGCTGCCCATGTCCAGCG < 41bp 0.825047238674215 0.593622308634538 0.6111814 0.3818868 prediction 0.462849860079353 Functional Loss - NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140109061 chr9:140109063 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_74104 0 0 1 0 2 NDOR1 chr9:140109022 3'AG 140109022 Downstream 42bp
chr9 140109063 140109063 1 + C T BRCA 140109061 + 140109041 140109081 41 GTGCTGATTCAGCCCTCCAACTCGGCTGCCCATGTCCAGCG GTGCTGATTCAGCCCTCCAACTTGGCTGCCCATGTCCAGCG < 41bp 0.825047238674215 0.593622308634538 0.6111814 0.3818868 prediction 0.462849860079353 Functional Loss - NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140109061 chr9:140109063 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_74104 0 0 1 0 2 NDOR1 chr9:140109143 5'GT 140109143 Upstream 81bp
chr11 64029901 64029901 1 + G A KIRC 64029898 + 64029878 64029918 41 GATGTGGCGATGCAGCTCAACGCGGGCGTTTTTGAGTACAA GATGTGGCGATGCAGCTCAACGCAGGCGTTTTTGAGTACAA < 41bp 0.754854830235427 0.523440109111889 0.39101788 0.27306348 prediction 0.462829442247076 Functional Loss - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64029898 chr11:64029901 synonymous SNV . 0 24 hm5C_associated_SNPs_74109 0 0 0 0 1 PLCB3 chr11:64029879 3'AG 64029879 Downstream 23bp
chr1 160100291 160100291 1 + G A UCEC 160100288 + 160100268 160100308 41 ACGGATGAGCTGAACTTTCCCACGGAGAAGCTTTGCTTTGT ACGGATGAGCTGAACTTTCCCACAGAGAAGCTTTGCTTTGT < 41bp 0.762653298921989 0.531242561284371 0.24318555 0.047919482 prediction 0.462821475275235 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160100288 chr1:160100291 synonymous SNV . 0 24 hm5C_associated_SNPs_74113 0 0 0 0 1 ATP1A2 chr1:160100212 3'AG 160100212 Downstream 80bp
chr1 60139734 60139734 1 + G T ESCA 60139731 + 60139711 60139751 41 GCATGCCTGTGGTCCTGTCGCAAGAGGTGGAGTCCGTTCTT GCATGCCTGTGGTCCTGTCGCAATAGGTGGAGTCCGTTCTT < 41bp 0.912247080063016 0.680843426760739 0.9260491 0.85091114 prediction 0.462807306604552 Functional Loss - FGGY ENSG00000172456 CDS Human protein_coding chr1:60139731 chr1:60139734 stopgain 1.000 1 24 hm5C_associated_SNPs_74114 0 0 0 0 2 FGGY chr1:60139711 3'AG 60139711 Downstream 24bp
chr1 60139734 60139734 1 + G T ESCA 60139731 + 60139711 60139751 41 GCATGCCTGTGGTCCTGTCGCAAGAGGTGGAGTCCGTTCTT GCATGCCTGTGGTCCTGTCGCAATAGGTGGAGTCCGTTCTT < 41bp 0.912247080063016 0.680843426760739 0.9260491 0.85091114 prediction 0.462807306604552 Functional Loss - FGGY ENSG00000172456 CDS Human protein_coding chr1:60139731 chr1:60139734 stopgain 1.000 1 24 hm5C_associated_SNPs_74114 0 0 0 0 2 FGGY chr1:60139805 5'GT 60139805 Upstream 72bp
chr11 65631144 65631144 1 + G A COAD 65631141 + 65631121 65631161 41 CCCACACGGTGCGCAAGCTGCACGTTGGAGATTTTGTGTGG CCCACACGGTGCGCAAGCTGCACATTGGAGATTTTGTGTGG < 41bp 0.767670110422134 0.536267180577511 0.22882333 0.16110545 prediction 0.462805859689244 Functional Loss - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65631141 chr11:65631144 nonsynonymous SNV 0.958 1 24 hm5C_associated_SNPs_74115 0 0 1 1 2 MUS81 chr11:65631071 3'AG 65631071 Downstream 74bp
chr11 65631144 65631144 1 + G A COAD 65631141 + 65631121 65631161 41 CCCACACGGTGCGCAAGCTGCACGTTGGAGATTTTGTGTGG CCCACACGGTGCGCAAGCTGCACATTGGAGATTTTGTGTGG < 41bp 0.767670110422134 0.536267180577511 0.22882333 0.16110545 prediction 0.462805859689244 Functional Loss - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65631141 chr11:65631144 nonsynonymous SNV 0.958 1 24 hm5C_associated_SNPs_74115 0 0 1 1 2 MUS81 chr11:65631192 5'GT 65631192 Upstream 49bp
chr12 27470306 27470306 1 + C T SKCM 27470303 + 27470283 27470323 41 TGGGACACCAGATTACATTGCTCCAGAAGTATTCATGCAGA TGGGACACCAGATTACATTGCTCTAGAAGTATTCATGCAGA < 41bp 0.731398746350095 0.496574130304496 0.29949522 0.22151026 prediction 0.46279749270019 Functional Loss - STK38L ENSG00000211455 CDS Human protein_coding chr12:27470303 chr12:27470306 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_74116 0 0 1 0 2 STK38L chr12:27470269 3'AG 27470269 Downstream 38bp
chr12 27470306 27470306 1 + C T SKCM 27470303 + 27470283 27470323 41 TGGGACACCAGATTACATTGCTCCAGAAGTATTCATGCAGA TGGGACACCAGATTACATTGCTCTAGAAGTATTCATGCAGA < 41bp 0.731398746350095 0.496574130304496 0.29949522 0.22151026 prediction 0.46279749270019 Functional Loss - STK38L ENSG00000211455 CDS Human protein_coding chr12:27470303 chr12:27470306 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_74116 0 0 1 0 2 STK38L chr12:27470386 5'GT 27470386 Upstream 81bp
chrX 140995914 140995914 1 + G T LUAD 140995912 + 140995892 140995932 41 AGCCCTTGTTCACTTATACACTGGATGAAAAGGTGGACGAG AGCCCTTGTTCACTTATACACTTGATGAAAAGGTGGACGAG < 41bp 0.890531096609102 0.659136322976386 0.43810847 0.13182396 prediction 0.462789547265432 Functional Loss - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140995912 chrX:140995914 synonymous SNV . 0 23 hm5C_associated_SNPs_74119 0 0 0 0 1 MAGEC1 chrX:140995876 3'AG 140995876 Downstream 39bp
chr10 76980587 76980587 1 + C T KIRP 76980584 + 76980564 76980604 41 TGACTTTGATTTTGCTGGACCTGCAATCCATGGTTCAGCTG TGACTTTGATTTTGCTGGACCTGTAATCCATGGTTCAGCTG < 41bp 0.73203339765929 0.500641512313459 0.035262764 0.02217555 prediction 0.462783770691662 Functional Loss - VDAC2 ENSG00000165637 CDS Human protein_coding chr10:76980584 chr10:76980587 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_74120 0 0 0 0 1 VDAC2 chr10:76980501 3'AG 76980501 Downstream 87bp
chr1 244724023 244724023 1 + C T UCEC 244724021 + 244724001 244724041 41 GGACAGAAAATGAAATTTACCTCGGATCCATTCTTCTTAAG GGACAGAAAATGAAATTTACCTTGGATCCATTCTTCTTAAG < 41bp 0.731388387012369 0.453769635381208 0.07463509 0.041265905 prediction 0.462776774024737 Functional Loss - CATSPERE ENSG00000179397 CDS Human protein_coding chr1:244724021 chr1:244724023 synonymous SNV . 0 23 hm5C_associated_SNPs_74121 0 0 0 0 1 CATSPERE chr1:244723970 3'AG 244723970 Downstream 54bp
chr14 100996221 100996221 1 + C T SKCM 100996219 + 100996199 100996239 41 GACTTGCTGGTGACGGGCAGCGCCGATGGCCGGGTCCTGAT GACTTGCTGGTGACGGGCAGCGTCGATGGCCGGGTCCTGAT < 41bp 0.807060807144668 0.575673954380354 0.3709733 0.42894855 prediction 0.462773705528628 Functional Loss - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100996219 chr14:100996221 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_74122 0 0 1 0 1 WDR25 chr14:100996157 3'AG 100996157 Downstream 65bp
chr9 108467982 108467982 1 + C T SKCM 108467980 + 108467960 108468000 41 CTGTCTACTGCTTGCAGAGCCTCCATTGAAGTTTCTTGCAA CTGTCTACTGCTTGCAGAGCCTTCATTGAAGTTTCTTGCAA < 41bp 0.868954584941255 0.637570161442818 0.9676791 0.5016029 prediction 0.462768846996874 Functional Loss - TMEM38B ENSG00000095209 CDS Human protein_coding chr9:108467980 chr9:108467982 nonsynonymous SNV 0.991 1 23 hm5C_associated_SNPs_74124 0 0 1 0 1 TMEM38B chr9:108468034 5'GT 108468034 Upstream 53bp
chr5 147820773 147820773 1 + C T COAD 147820771 + 147820751 147820791 41 TGCAGAGCCCAACAGCTTCGCTCGATACGACTTTGAAGACG TGCAGAGCCCAACAGCTTCGCTTGATACGACTTTGAAGACG < 41bp 0.853490909700417 0.622109769622624 0.17912206 0.066028595 prediction 0.462762280155587 Functional Loss - FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147820771 chr5:147820773 stopgain 0.942 1 23 hm5C_associated_SNPs_74126 0 0 1 0 2 FBXO38 chr5:147820687 3'AG 147820687 Downstream 87bp
chr5 147820773 147820773 1 + C T COAD 147820771 + 147820751 147820791 41 TGCAGAGCCCAACAGCTTCGCTCGATACGACTTTGAAGACG TGCAGAGCCCAACAGCTTCGCTTGATACGACTTTGAAGACG < 41bp 0.853490909700417 0.622109769622624 0.17912206 0.066028595 prediction 0.462762280155587 Functional Loss - FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147820771 chr5:147820773 stopgain 0.942 1 23 hm5C_associated_SNPs_74126 0 0 1 0 2 FBXO38 chr5:147820800 5'GT 147820800 Upstream 28bp
chr1 166958650 166958650 1 + G A SKCM 166958647 + 166958627 166958667 41 TCTTCGTGCAGGAGAAGATCCCCGAACTACGGCGACGAGGC TCTTCGTGCAGGAGAAGATCCCCAAACTACGGCGACGAGGC < 41bp 0.742545770788947 0.511174146468115 0.6410854 0.74735737 prediction 0.462743248641664 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166958647 chr1:166958650 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_74129 0 0 0 0 2 MAEL chr1:166958638 3'AG 166958638 Downstream 13bp
chr1 166958650 166958650 1 + G A SKCM 166958647 + 166958627 166958667 41 TCTTCGTGCAGGAGAAGATCCCCGAACTACGGCGACGAGGC TCTTCGTGCAGGAGAAGATCCCCAAACTACGGCGACGAGGC < 41bp 0.742545770788947 0.511174146468115 0.6410854 0.74735737 prediction 0.462743248641664 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166958647 chr1:166958650 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_74129 0 0 0 0 2 MAEL chr1:166958721 5'GT 166958721 Upstream 72bp
chr4 2695386 2695386 1 + G A STAD 2695383 + 2695363 2695403 41 GCCGCCCCGAGGAATAGCCCCACGGGCTTGGCCCCCCTCCC GCCGCCCCGAGGAATAGCCCCACAGGCTTGGCCCCCCTCCC < 41bp 0.778136084031941 0.546765959545562 0.84655136 0.45411584 prediction 0.462740248972759 Functional Loss - FAM193A ENSG00000125386 CDS Human protein_coding chr4:2695383 chr4:2695386 synonymous SNV . 0 24 hm5C_associated_SNPs_74131 0 0 1 0 1 FAM193A chr4:2695313 3'AG 2695313 Downstream 74bp
chr16 12136874 12136874 1 + T C COAD 12136873 + 12136853 12136893 41 GCGCCTGGCTGCGCTGTGCCCTCAACGAACACTCCCTGGAG GCGCCTGGCTGCGCTGTGCCCCCAACGAACACTCCCTGGAG < 41bp 0.778678102945501 0.547308480854 0.3632779 0.22324258 prediction 0.462739244183002 Functional Loss - SNX29 ENSG00000048471 CDS Human protein_coding chr16:12136873 chr16:12136874 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_74132 0 0 1 0 1 SNX29 chr16:12136934 5'GT 12136934 Upstream 61bp
chr2 63832497 63832497 1 + C T UCEC 63832495 + 63832475 63832515 41 CTGCAAAAGCCATCTGTGACCACGTCAGGGACATCTGGTTT CTGCAAAAGCCATCTGTGACCATGTCAGGGACATCTGGTTT < 41bp 0.731360456734886 0.452419685279616 0.21968085 0.2126897 prediction 0.462720913469772 Functional Loss - MDH1 ENSG00000014641 CDS Human protein_coding chr2:63832495 chr2:63832497 synonymous SNV . 0 23 hm5C_associated_SNPs_74134 0 0 1 0 2 MDH1 chr2:63832414 3'AG 63832414 Downstream 84bp
chr2 63832497 63832497 1 + C T UCEC 63832495 + 63832475 63832515 41 CTGCAAAAGCCATCTGTGACCACGTCAGGGACATCTGGTTT CTGCAAAAGCCATCTGTGACCATGTCAGGGACATCTGGTTT < 41bp 0.731360456734886 0.452419685279616 0.21968085 0.2126897 prediction 0.462720913469772 Functional Loss - MDH1 ENSG00000014641 CDS Human protein_coding chr2:63832495 chr2:63832497 synonymous SNV . 0 23 hm5C_associated_SNPs_74134 0 0 1 0 2 MDH1 chr2:63832527 5'GT 63832527 Upstream 31bp
chr10 26849092 26849092 1 + G A SKCM 26849089 + 26849069 26849109 41 GTATCTCTGCTGTGATGACACAAGAACCCTTAACCAGTGGG GTATCTCTGCTGTGATGACACAAAAACCCTTAACCAGTGGG < 41bp 0.733354632654068 0.501994604646513 0.2854552 0.1449267 prediction 0.462720056015109 Functional Loss - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26849089 chr10:26849092 nonsynonymous SNV 0.977 0 24 hm5C_associated_SNPs_74135 0 0 0 0 2 APBB1IP chr10:26849034 3'AG 26849034 Downstream 59bp
chr10 26849092 26849092 1 + G A SKCM 26849089 + 26849069 26849109 41 GTATCTCTGCTGTGATGACACAAGAACCCTTAACCAGTGGG GTATCTCTGCTGTGATGACACAAAAACCCTTAACCAGTGGG < 41bp 0.733354632654068 0.501994604646513 0.2854552 0.1449267 prediction 0.462720056015109 Functional Loss - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26849089 chr10:26849092 nonsynonymous SNV 0.977 0 24 hm5C_associated_SNPs_74135 0 0 0 0 2 APBB1IP chr10:26849132 5'GT 26849132 Upstream 41bp
chr20 35827521 35827521 1 + G A UCEC 35827518 + 35827498 35827538 41 AGTGAGGACTCATCTGTTACCCAGATCTACCATGCAGTTGC AGTGAGGACTCATCTGTTACCCAAATCTACCATGCAGTTGC < 41bp 0.756122122971195 0.524764768888038 0.71925646 0.45275053 prediction 0.462714708166313 Functional Loss - RPN2 ENSG00000118705 CDS Human protein_coding chr20:35827518 chr20:35827521 synonymous SNV . 0 24 hm5C_associated_SNPs_74136 0 0 1 0 1 RPN2 chr20:35827453 3'AG 35827453 Downstream 69bp
chr4 5830268 5830268 1 + G A ESCA 5830265 + 5830245 5830285 41 GGTGCTCCGGGAACGCCTTCCGCGGAATGAAGCGGCCCATG GGTGCTCCGGGAACGCCTTCCGCAGAATGAAGCGGCCCATG < 41bp 0.763933979581948 0.532579803859658 0.9066111 0.79470503 prediction 0.46270835144458 Functional Loss - CRMP1 ENSG00000072832 CDS Human protein_coding chr4:5830265 chr4:5830268 nonsynonymous SNV 0.809 3 24 hm5C_associated_SNPs_74138 0 0 0 0 1 CRMP1 chr4:5830246 3'AG 5830246 Downstream 23bp
chr8 2024277 2024277 1 + G A UCEC 2024274 + 2024254 2024294 41 CACCCATGGACTTGCAGTGCCACGACGCCAACCGGGACTAC CACCCATGGACTTGCAGTGCCACAACGCCAACCGGGACTAC < 41bp 0.753829147908221 0.522480933188157 0.101485014 0.10013145 prediction 0.462696429440128 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2024274 chr8:2024277 nonsynonymous SNV 0.107 3 24 hm5C_associated_SNPs_74140 0 0 0 0 2 MYOM2 chr8:2024221 3'AG 2024221 Downstream 57bp
chr8 2024277 2024277 1 + G A UCEC 2024274 + 2024254 2024294 41 CACCCATGGACTTGCAGTGCCACGACGCCAACCGGGACTAC CACCCATGGACTTGCAGTGCCACAACGCCAACCGGGACTAC < 41bp 0.753829147908221 0.522480933188157 0.101485014 0.10013145 prediction 0.462696429440128 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2024274 chr8:2024277 nonsynonymous SNV 0.107 3 24 hm5C_associated_SNPs_74140 0 0 0 0 2 MYOM2 chr8:2024362 5'GT 2024362 Upstream 86bp
chr3 40571807 40571807 1 + G A rs200611775 40571804 + 40571784 40571824 41 AGATTCTGAGAGGCATCAGTCAAGGTGAGTATGAGAATCCA AGATTCTGAGAGGCATCAGTCAAAGTGAGTATGAGAATCCA < 41bp 0.731347082397837 0.499402394104222 0.90928733 0.8979702 prediction 0.462694164795673 Functional Loss - ZNF621 ENSG00000172888 CDS Human protein_coding chr3:40571804 chr3:40571807 nonsynonymous SNV 0.077 1 24 hm5C_associated_SNPs_74141 0 0 1 0 1 ZNF621 chr3:40571807 5'GT 40571807 Upstream 1bp
chr2 238449098 238449098 1 + G A LUSC 238449095 + 238449075 238449115 41 AGTGACCAGGAGACCTCGTCCGAGGAGGAGGAAGCCAAGGA AGTGACCAGGAGACCTCGTCCGAAGAGGAGGAAGCCAAGGA < 41bp 0.755746501759917 0.524399519893994 0.9064287 0.43293738 prediction 0.462693963731846 Functional Loss - MLPH ENSG00000115648 CDS Human protein_coding chr2:238449095 chr2:238449098 synonymous SNV . 0 24 hm5C_associated_SNPs_74142 0 0 0 0 1 MLPH chr2:238449176 5'GT 238449176 Upstream 79bp
chrX 155233513 155233513 1 + G A SKCM 155233510 + 155233490 155233530 41 GTGGACCCGGAGTACCTGCCCCGGAGACACGGTGAGCAGCA GTGGACCCGGAGTACCTGCCCCGAAGACACGGTGAGCAGCA < 41bp 0.765943075644448 0.534598184381869 0.8856843 0.07624641 prediction 0.462689782525158 Functional Loss - IL9R ENSG00000124334 CDS Human protein_coding chrX:155233510 chrX:155233513 nonsynonymous SNV 0.753 0 24 hm5C_associated_SNPs_74144 0 0 0 0 1 IL9R chrX:155233520 5'GT 155233520 Upstream 8bp
chr1 156255359 156255359 1 + C T BLCA 156255357 + 156255337 156255377 41 TTACCAAGCTAGAGGAGCTGCCCGAAGACGATGCCAACCTG TTACCAAGCTAGAGGAGCTGCCTGAAGACGATGCCAACCTG < 41bp 0.731344397025381 0.456578832584015 0.17089576 0.30340707 prediction 0.462688794050762 Functional Loss - TMEM79 ENSG00000163472 CDS Human protein_coding chr1:156255357 chr1:156255359 synonymous SNV . 0 23 hm5C_associated_SNPs_74145 0 0 0 0 1 TMEM79 chr1:156255316 3'AG 156255316 Downstream 44bp
chr1 156255360 156255360 1 + G A READ 156255357 + 156255337 156255377 41 TTACCAAGCTAGAGGAGCTGCCCGAAGACGATGCCAACCTG TTACCAAGCTAGAGGAGCTGCCCAAAGACGATGCCAACCTG < 41bp 0.731344397025381 0.487998262562865 0.17089576 0.08898708 prediction 0.462688794050762 Functional Loss - TMEM79 ENSG00000163472 CDS Human protein_coding chr1:156255357 chr1:156255360 nonsynonymous SNV 0.050 0 24 hm5C_associated_SNPs_74146 0 0 0 0 1 TMEM79 chr1:156255316 3'AG 156255316 Downstream 45bp
chr14 103568468 103568468 1 + G A UCEC 103568465 + 103568445 103568485 41 GCCTGTGCAGAAGGCAAATCCGTGGCCGACCTCATTACTGA GCCTGTGCAGAAGGCAAATCCGTAGCCGACCTCATTACTGA < 41bp 0.772961893560909 0.541619936694506 0.43147278 0.4346035 prediction 0.462683913732805 Functional Loss - EXOC3L4 ENSG00000205436 CDS Human protein_coding chr14:103568465 chr14:103568468 synonymous SNV . 0 24 hm5C_associated_SNPs_74148 0 0 0 0 1 EXOC3L4 chr14:103568455 3'AG 103568455 Downstream 14bp
chr10 81371698 81371698 1 + C T rs72659390 81371696 + 81371676 81371716 41 TCCCCGGCACTCCTGGATCCCACGGCCTGCCAGGCAGGGAC TCCCCGGCACTCCTGGATCCCATGGCCTGCCAGGCAGGGAC < 41bp 0.731340336607792 0.479051799598764 0.49855167 0.51856107 prediction 0.462680673215583 Functional Loss - SFTPA1 ENSG00000122852 CDS Human protein_coding chr10:81371696 chr10:81371698 synonymous SNV . 0 23 hm5C_associated_SNPs_74150 1 0 0 0 1 SFTPA1 chr10:81371753 5'GT 81371753 Upstream 56bp
chr19 50185184 50185184 1 + G T SARC 50185181 + 50185161 50185201 41 CCCTAGGAGATGCTGAAGGACGAGGTGCGCACCCTCACTTA CCCTAGGAGATGCTGAAGGACGATGTGCGCACCCTCACTTA < 41bp 0.931528024182719 0.70018878204046 0.59749776 0.07021561 prediction 0.462678484284518 Functional Loss - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50185181 chr19:50185184 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_74152 0 0 1 0 1 PRMT1 chr19:50185167 3'AG 50185167 Downstream 18bp
chr11 66189939 66189939 1 + G A CESC 66189936 + 66189916 66189956 41 CTCCAGGTGGACCTGGTTGCCCAGGGTGACAGCATCTACGA CTCCAGGTGGACCTGGTTGCCCAAGGTGACAGCATCTACGA < 41bp 0.738727080163297 0.507392823493242 0.30524993 0.74309224 prediction 0.46266851334011 Functional Loss - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66189936 chr11:66189939 synonymous SNV . 0 24 hm5C_associated_SNPs_74155 0 0 0 0 2 NPAS4 chr11:66189922 3'AG 66189922 Downstream 18bp
chr11 66189939 66189939 1 + G A CESC 66189936 + 66189916 66189956 41 CTCCAGGTGGACCTGGTTGCCCAGGGTGACAGCATCTACGA CTCCAGGTGGACCTGGTTGCCCAAGGTGACAGCATCTACGA < 41bp 0.738727080163297 0.507392823493242 0.30524993 0.74309224 prediction 0.46266851334011 Functional Loss - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66189936 chr11:66189939 synonymous SNV . 0 24 hm5C_associated_SNPs_74155 0 0 0 0 2 NPAS4 chr11:66190024 5'GT 66190024 Upstream 86bp
chrX 69456938 69456938 1 + G T LUSC 69456935 + 69456915 69456955 41 TCACCTGAGCACAACTACCTCATGGGGGTTCACCCCCATGG TCACCTGAGCACAACTACCTCATTGGGGTTCACCCCCATGG < 41bp 0.731334072068784 0.318085451333058 0.42955127 0.23377216 prediction 0.462668144137568 Functional Loss - AWAT1 ENSG00000204195 CDS Human protein_coding chrX:69456935 chrX:69456938 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_74156 0 0 0 0 1 AWAT1 chrX:69456894 3'AG 69456894 Downstream 45bp
chr1 2235825 2235825 1 + C T TGCT 2235823 + 2235803 2235843 41 CCGGGTGCGCGTGCCCTGCCCTCGGCCGTCCCTGATGCTGC CCGGGTGCGCGTGCCCTGCCCTTGGCCGTCCCTGATGCTGC < 41bp 0.795939321992433 0.564612926957247 0.19261497 0.184939 prediction 0.462652790070371 Functional Loss - SKI ENSG00000157933 CDS Human protein_coding chr1:2235823 chr1:2235825 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_74157 1 0 1 0 1 SKI chr1:2235732 3'AG 2235732 Downstream 94bp
chr1 18691801 18691801 1 + A C LUAD 18691800 + 18691780 18691820 41 AGCTCCGGCCCCCTACAGGACAGCAGGCCCTTCCGCAGCCT AGCTCCGGCCCCCTACAGGACCGCAGGCCCTTCCGCAGCCT < 41bp 0.794966191234134 0.563643715592209 0.2926467 0.17752576 prediction 0.46264495128385 Functional Loss - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18691800 chr1:18691801 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_74158 0 0 0 0 1 IGSF21 chr1:18691717 3'AG 18691717 Downstream 85bp
chr1 202990015 202990015 1 + T C UCEC 202990014 + 202989994 202990034 41 CAGACCAGGACTGCTGCCTACTGCAGGTCACCACCCTCAAT CAGACCAGGACTGCTGCCTACCGCAGGTCACCACCCTCAAT < 41bp 0.811946970981387 0.580625927866602 0.066908866 0.10432199 prediction 0.46264208622957 Functional Loss - TMEM183A;TMEM183B ENSG00000163444 CDS Human protein_coding chr1:202990014 chr1:202990015 nonsynonymous SNV 0.988 4 22 hm5C_associated_SNPs_74159 0 0 0 0 2 TMEM183A;TMEM183B chr1:202989921 3'AG 202989921 Downstream 95bp
chr1 202990015 202990015 1 + T C UCEC 202990014 + 202989994 202990034 41 CAGACCAGGACTGCTGCCTACTGCAGGTCACCACCCTCAAT CAGACCAGGACTGCTGCCTACCGCAGGTCACCACCCTCAAT < 41bp 0.811946970981387 0.580625927866602 0.066908866 0.10432199 prediction 0.46264208622957 Functional Loss - TMEM183A;TMEM183B ENSG00000163444 CDS Human protein_coding chr1:202990014 chr1:202990015 nonsynonymous SNV 0.988 4 22 hm5C_associated_SNPs_74159 0 0 0 0 2 TMEM183A;TMEM183B chr1:202990076 5'GT 202990076 Upstream 62bp
chr2 98779397 98779397 1 + G A rs149236888 98779394 + 98779374 98779414 41 CGCTGGCCCAGATCCAGAGGCTGGTGGCCGAGCCTCCCAAG CGCTGGCCCAGATCCAGAGGCTGATGGCCGAGCCTCCCAAG < 41bp 0.745374566968057 0.514056503037651 0.48073745 0.3018384 prediction 0.462636127860812 Functional Loss - VWA3B ENSG00000168658 CDS Human protein_coding chr2:98779394 chr2:98779397 stopgain 0.773 1 24 hm5C_associated_SNPs_74161 0 0 0 0 2 VWA3B chr2:98779314 3'AG 98779314 Downstream 84bp
chr2 98779397 98779397 1 + G A rs149236888 98779394 + 98779374 98779414 41 CGCTGGCCCAGATCCAGAGGCTGGTGGCCGAGCCTCCCAAG CGCTGGCCCAGATCCAGAGGCTGATGGCCGAGCCTCCCAAG < 41bp 0.745374566968057 0.514056503037651 0.48073745 0.3018384 prediction 0.462636127860812 Functional Loss - VWA3B ENSG00000168658 CDS Human protein_coding chr2:98779394 chr2:98779397 stopgain 0.773 1 24 hm5C_associated_SNPs_74161 0 0 0 0 2 VWA3B chr2:98779439 5'GT 98779439 Upstream 43bp
chrX 148797305 148797305 1 + G T HNSC 148797302 + 148797282 148797322 41 AACCTGGAGGACAGGAGTCCCAGGAGAACCCAGAGGATCAC AACCTGGAGGACAGGAGTCCCAGTAGAACCCAGAGGATCAC < 41bp 0.926588933714579 0.695283029723938 0.8938974 0.34475935 prediction 0.462611807981281 Functional Loss - MAGEA11 ENSG00000185247 CDS Human protein_coding chrX:148797302 chrX:148797305 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_74169 0 0 0 0 1 MAGEA11 chrX:148797264 3'AG 148797264 Downstream 42bp
chr19 8436013 8436013 1 + G A UCEC 8436010 + 8435990 8436030 41 AACCGGCCCTGGGAAGCCTACAAGGCGGGGTTTGGGGATCC AACCGGCCCTGGGAAGCCTACAAAGCGGGGTTTGGGGATCC < 41bp 0.761039737390768 0.529743648776811 0.7406829 0.29980344 prediction 0.462592177227915 Functional Loss - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8436010 chr19:8436013 synonymous SNV . 0 24 hm5C_associated_SNPs_74173 0 0 0 0 2 ANGPTL4 chr19:8435940 3'AG 8435940 Downstream 74bp
chr19 8436013 8436013 1 + G A UCEC 8436010 + 8435990 8436030 41 AACCGGCCCTGGGAAGCCTACAAGGCGGGGTTTGGGGATCC AACCGGCCCTGGGAAGCCTACAAAGCGGGGTTTGGGGATCC < 41bp 0.761039737390768 0.529743648776811 0.7406829 0.29980344 prediction 0.462592177227915 Functional Loss - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8436010 chr19:8436013 synonymous SNV . 0 24 hm5C_associated_SNPs_74173 0 0 0 0 2 ANGPTL4 chr19:8436035 5'GT 8436035 Upstream 23bp
chr20 2844013 2844013 1 + G T SARC 2844011 + 2843991 2844031 41 CTTCCTGAAGTACAGGGCGTCAGCAGGATCCTGGCCCACTG CTTCCTGAAGTACAGGGCGTCATCAGGATCCTGGCCCACTG < 41bp 0.90277515916727 0.671480692519093 0.8184999 0.32623154 prediction 0.462588933296355 Functional Loss - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2844011 chr20:2844013 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_74174 0 0 1 1 1 VPS16 chr20:2843936 3'AG 2843936 Downstream 78bp
chr1 171763663 171763663 1 + T C LUAD 171763662 + 171763642 171763682 41 GGTTAAAAGCATCTTGACTCCTGAAGGTATGGAGAACAAAA GGTTAAAAGCATCTTGACTCCCGAAGGTATGGAGAACAAAA < 41bp 0.731291551651191 0.487114749023327 0.29079008 0.48314744 prediction 0.462583103302383 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171763662 chr1:171763663 synonymous SNV . 0 22 hm5C_associated_SNPs_74177 0 0 1 0 1 METTL13 chr1:171763667 5'GT 171763667 Upstream 5bp
chr16 5058463 5058463 1 + G A ESCA 5058460 + 5058440 5058480 41 GAAGGAGAGTCGGTCATCACCTGGGACTTTGACATCCTGCG GAAGGAGAGTCGGTCATCACCTGAGACTTTGACATCCTGCG < 41bp 0.760808484186529 0.529518858719333 0.6543843 0.32267284 prediction 0.462579250934393 Functional Loss - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5058460 chr16:5058463 stopgain 1.000 1 24 hm5C_associated_SNPs_74178 0 0 0 0 1 SEC14L5 chr16:5058422 3'AG 5058422 Downstream 42bp
chr9 37501752 37501752 1 + T C rs17412622 37501751 + 37501731 37501771 41 TTCTATGAAGGCGAAGATTACTGCATATGTGATCATACTTG TTCTATGAAGGCGAAGATTACCGCATATGTGATCATACTTG < 41bp 0.731288555536261 0.478347147586529 0.17535385 0.23940071 prediction 0.462577111072522 Functional Loss - POLR1E ENSG00000137054 CDS Human protein_coding chr9:37501751 chr9:37501752 synonymous SNV . 0 22 hm5C_associated_SNPs_74179 0 0 0 0 2 POLR1E chr9:37501710 3'AG 37501710 Downstream 43bp
chr9 37501752 37501752 1 + T C rs17412622 37501751 + 37501731 37501771 41 TTCTATGAAGGCGAAGATTACTGCATATGTGATCATACTTG TTCTATGAAGGCGAAGATTACCGCATATGTGATCATACTTG < 41bp 0.731288555536261 0.478347147586529 0.17535385 0.23940071 prediction 0.462577111072522 Functional Loss - POLR1E ENSG00000137054 CDS Human protein_coding chr9:37501751 chr9:37501752 synonymous SNV . 0 22 hm5C_associated_SNPs_74179 0 0 0 0 2 POLR1E chr9:37501841 5'GT 37501841 Upstream 90bp
chr16 3187610 3187610 1 + C T STAD 3187608 + 3187588 3187628 41 GGCTGGGTGCGTGAGCAGCACCCGGGAAGCGGTGAGGAGGC GGCTGGGTGCGTGAGCAGCACCTGGGAAGCGGTGAGGAGGC < 41bp 0.731286576913872 0.488315904198207 0.31634754 0.32578647 prediction 0.462573153827743 Functional Loss - ZNF213 ENSG00000085644 CDS Human protein_coding chr16:3187608 chr16:3187610 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_74181 0 0 0 0 1 ZNF213 chr16:3187680 5'GT 3187680 Upstream 71bp
chr6 39034017 39034017 1 + G A UCEC 39034014 + 39033994 39034034 41 CTGTTCCTCTACATCATCTACACGGTGGGCTACGCACTCTC CTGTTCCTCTACATCATCTACACAGTGGGCTACGCACTCTC < 41bp 0.786726214649433 0.555441674411628 0.37729973 0.07328054 prediction 0.462569080475611 Functional Loss - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39034014 chr6:39034017 synonymous SNV . 0 24 hm5C_associated_SNPs_74183 0 0 0 0 2 GLP1R chr6:39033973 3'AG 39033973 Downstream 45bp
chr6 39034017 39034017 1 + G A UCEC 39034014 + 39033994 39034034 41 CTGTTCCTCTACATCATCTACACGGTGGGCTACGCACTCTC CTGTTCCTCTACATCATCTACACAGTGGGCTACGCACTCTC < 41bp 0.786726214649433 0.555441674411628 0.37729973 0.07328054 prediction 0.462569080475611 Functional Loss - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39034014 chr6:39034017 synonymous SNV . 0 24 hm5C_associated_SNPs_74183 0 0 0 0 2 GLP1R chr6:39034079 5'GT 39034079 Upstream 63bp
chr1 175067530 175067530 1 + T C UCEC 175067529 + 175067509 175067549 41 GAGAATATGGCCACGGTCTCCTGGGACCCGGTGCAGGCCGC GAGAATATGGCCACGGTCTCCCGGGACCCGGTGCAGGCCGC < 41bp 0.746759167713027 0.515479451143487 0.88350415 0.8793897 prediction 0.46255943313908 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175067529 chr1:175067530 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_74186 0 0 0 0 1 TNN chr1:175067468 3'AG 175067468 Downstream 63bp
chr1 110167930 110167930 1 + C T COAD 110167928 + 110167908 110167948 41 CATCACTGTCTCTGCAGAGGCTCGGGGTGGTCTGGGGGCCC CATCACTGTCTCTGCAGAGGCTTGGGGTGGTCTGGGGGCCC < 41bp 0.772195849150048 0.540918738184302 0.58683175 0.8774148 prediction 0.462554221931492 Functional Loss - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110167928 chr1:110167930 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_74187 0 0 1 0 1 AMPD2 chr1:110167925 3'AG 110167925 Downstream 6bp
chr20 9496681 9496681 1 + G A LGG 9496678 + 9496658 9496698 41 ACAGGCCGATATCGCATTGACCCGGGGAGCTGAGGTGAAGG ACAGGCCGATATCGCATTGACCCAGGGAGCTGAGGTGAAGG < 41bp 0.764681273886127 0.533404227089289 0.78844464 0.4752813 prediction 0.462554093593675 Functional Loss - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9496678 chr20:9496681 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_74188 0 0 0 0 2 LAMP5 chr20:9496647 3'AG 9496647 Downstream 35bp
chr20 9496681 9496681 1 + G A LGG 9496678 + 9496658 9496698 41 ACAGGCCGATATCGCATTGACCCGGGGAGCTGAGGTGAAGG ACAGGCCGATATCGCATTGACCCAGGGAGCTGAGGTGAAGG < 41bp 0.764681273886127 0.533404227089289 0.78844464 0.4752813 prediction 0.462554093593675 Functional Loss - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9496678 chr20:9496681 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_74188 0 0 0 0 2 LAMP5 chr20:9496778 5'GT 9496778 Upstream 98bp
chr3 44771144 44771144 1 + A C rs372662831 44771143 + 44771123 44771163 41 ACTTACTCCTTTCCGCAGGGCAGCACCCAGGGACCTGAGTG ACTTACTCCTTTCCGCAGGGCCGCACCCAGGGACCTGAGTG < 41bp 0.756171239703046 0.524903623962168 0.24039894 0.13910156 prediction 0.462535231481756 Functional Loss - ZNF501 ENSG00000186446 UTR5 Human protein_coding chr3:44771143 chr3:44771144 . . 0 22 hm5C_associated_SNPs_74195 0 0 0 0 1 ZNF501 chr3:44771214 5'GT 44771214 Upstream 71bp
chr15 40861878 40861878 1 + G A rs200775057 40861875 + 40861855 40861895 41 AGGGAGCGTGTCGTGCCGCCCCCGAAGAAGCGGCGGACCGG AGGGAGCGTGTCGTGCCGCCCCCAAAGAAGCGGCGGACCGG < 41bp 0.775879007254134 0.544613132126559 0.10697976 0.075490594 prediction 0.46253175025515 Functional Loss - RPUSD2 ENSG00000166133 CDS Human protein_coding chr15:40861875 chr15:40861878 synonymous SNV . 0 24 hm5C_associated_SNPs_74196 0 0 1 0 1 RPUSD2 chr15:40861959 5'GT 40861959 Upstream 82bp
chr17 1678376 1678376 1 + C T BLCA 1678374 + 1678354 1678394 41 CAGTGGGTAACAAAGTTTGACTCCAGAAAGACTTCCCTCGA CAGTGGGTAACAAAGTTTGACTTCAGAAAGACTTCCCTCGA < 41bp 0.73126311887431 0.426471501380525 0.9416444 0.10020873 prediction 0.462526237748621 Functional Loss - SERPINF1 ENSG00000132386 CDS Human protein_coding chr17:1678374 chr17:1678376 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_74197 0 0 1 0 1 SERPINF1 chr17:1678352 3'AG 1678352 Downstream 25bp
chr17 4800051 4800051 1 + G A LGG 4800048 + 4800028 4800068 41 GTGGAGACGGGCCACCTCGACGGGGTCTTCATGCACAAACG GTGGAGACGGGCCACCTCGACGGAGTCTTCATGCACAAACG < 41bp 0.775168208568181 0.543905242386728 0.3744712 0.08782047 prediction 0.462525932362908 Functional Loss - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4800048 chr17:4800051 synonymous SNV . 0 24 hm5C_associated_SNPs_74198 0 0 1 0 2 MINK1 chr17:4799969 3'AG 4799969 Downstream 83bp
chr17 4800051 4800051 1 + G A LGG 4800048 + 4800028 4800068 41 GTGGAGACGGGCCACCTCGACGGGGTCTTCATGCACAAACG GTGGAGACGGGCCACCTCGACGGAGTCTTCATGCACAAACG < 41bp 0.775168208568181 0.543905242386728 0.3744712 0.08782047 prediction 0.462525932362908 Functional Loss - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4800048 chr17:4800051 synonymous SNV . 0 24 hm5C_associated_SNPs_74198 0 0 1 0 2 MINK1 chr17:4800108 5'GT 4800108 Upstream 58bp
chr19 55106177 55106177 1 + A C rs142517538 55106176 + 55106156 55106196 41 GCTGAGCCAGGCTCTGTGATCACCCAGGGGAGTCCCGTGAC GCTGAGCCAGGCTCTGTGATCCCCCAGGGGAGTCCCGTGAC < 41bp 0.78718633019903 0.55593009040075 0.093532085 0.07318854 prediction 0.46251247959656 Functional Loss - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55106176 chr19:55106177 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_74200 0 0 0 0 1 LILRA1 chr19:55106130 3'AG 55106130 Downstream 48bp
chr12 77158109 77158109 1 + G C LUAD 77158105 + 77158085 77158125 41 CTGTGTGCCCCTTCTCCACCCAGAGGTGAGGAACCGTGCTG CTGTGTGCCCCTTCTCCACCCAGACGTGAGGAACCGTGCTG < 41bp 0.839305229870036 0.608049954209294 0.9240352 0.31679857 prediction 0.462510551321484 Functional Loss - ZDHHC17 ENSG00000186908 CDS Human protein_coding chr12:77158105 chr12:77158109 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_74201 0 0 1 4 1 ZDHHC17 chr12:77158109 5'GT 77158109 Upstream 1bp
chr4 140599771 140599771 1 + G T UCEC 140599769 + 140599749 140599789 41 CCCAGCAGTCACTGGGTCACCAGAGTTTGAGAGAGTATTTC CCCAGCAGTCACTGGGTCACCATAGTTTGAGAGAGTATTTC < 41bp 0.731246281424983 0.378916704857442 0.39410788 0.093216926 prediction 0.462492562849967 Functional Loss - MGST2 ENSG00000085871 CDS Human protein_coding chr4:140599769 chr4:140599771 stopgain 0.935 0 23 hm5C_associated_SNPs_74204 0 0 1 0 2 MGST2 chr4:140599697 3'AG 140599697 Downstream 75bp
chr4 140599771 140599771 1 + G T UCEC 140599769 + 140599749 140599789 41 CCCAGCAGTCACTGGGTCACCAGAGTTTGAGAGAGTATTTC CCCAGCAGTCACTGGGTCACCATAGTTTGAGAGAGTATTTC < 41bp 0.731246281424983 0.378916704857442 0.39410788 0.093216926 prediction 0.462492562849967 Functional Loss - MGST2 ENSG00000085871 CDS Human protein_coding chr4:140599769 chr4:140599771 stopgain 0.935 0 23 hm5C_associated_SNPs_74204 0 0 1 0 2 MGST2 chr4:140599796 5'GT 140599796 Upstream 26bp
chr2 113765477 113765477 1 + G A BLCA 113765474 + 113765454 113765494 41 TCCTTTCTCTTCTACCACAGCCAGAGTGGCAGGAACTCCAC TCCTTTCTCTTCTACCACAGCCAAAGTGGCAGGAACTCCAC < 41bp 0.770945489079408 0.539703329919218 0.49237937 0.20726135 prediction 0.462484318320381 Functional Loss - IL36A ENSG00000136694 CDS Human protein_coding chr2:113765474 chr2:113765477 synonymous SNV . 0 24 hm5C_associated_SNPs_74205 0 0 0 0 1 IL36A chr2:113765409 3'AG 113765409 Downstream 69bp
chr17 27075534 27075534 1 + C T HNSC 27075532 + 27075512 27075552 41 TACTTCTGTGGCCCCAGAGCCACCAGTACCAGTGCCCAAGG TACTTCTGTGGCCCCAGAGCCATCAGTACCAGTGCCCAAGG < 41bp 0.84796466611979 0.616723898405507 0.2638696 0.15224871 prediction 0.462481535428566 Functional Loss - TRAF4 ENSG00000076604 CDS Human protein_coding chr17:27075532 chr17:27075534 synonymous SNV . 0 23 hm5C_associated_SNPs_74206 0 0 1 0 1 TRAF4 chr17:27075529 3'AG 27075529 Downstream 6bp
chr5 150639418 150639418 1 + G T SKCM 150639416 + 150639396 150639436 41 GCCTGACCCCATCATCGTTCCTGGAAATGTGACCCTCAGTG GCCTGACCCCATCATCGTTCCTTGAAATGTGACCCTCAGTG < 41bp 0.898803774769755 0.66756577670255 0.24900144 0.08856338 prediction 0.462475996134411 Functional Loss - GM2A ENSG00000196743 CDS Human protein_coding chr5:150639416 chr5:150639418 stopgain 0.180 1 23 hm5C_associated_SNPs_74208 0 0 1 0 1 GM2A chr5:150639477 5'GT 150639477 Upstream 60bp
chr19 16192765 16192765 1 + G A STAD 16192762 + 16192742 16192782 41 CCCTCAACCGACGCATCCAGCTCGTTGAGGAGGAGTTGGAC CCCTCAACCGACGCATCCAGCTCATTGAGGAGGAGTTGGAC < 41bp 0.731225559654352 0.48952891428416 0.29914755 0.2886172 prediction 0.462451119308704 Functional Loss - TPM4 ENSG00000167460 CDS Human protein_coding chr19:16192762 chr19:16192765 nonsynonymous SNV 0.843 2 24 hm5C_associated_SNPs_74212 0 0 1 0 2 TPM4 chr19:16192723 3'AG 16192723 Downstream 43bp
chr19 16192765 16192765 1 + G A STAD 16192762 + 16192742 16192782 41 CCCTCAACCGACGCATCCAGCTCGTTGAGGAGGAGTTGGAC CCCTCAACCGACGCATCCAGCTCATTGAGGAGGAGTTGGAC < 41bp 0.731225559654352 0.48952891428416 0.29914755 0.2886172 prediction 0.462451119308704 Functional Loss - TPM4 ENSG00000167460 CDS Human protein_coding chr19:16192762 chr19:16192765 nonsynonymous SNV 0.843 2 24 hm5C_associated_SNPs_74212 0 0 1 0 2 TPM4 chr19:16192856 5'GT 16192856 Upstream 92bp
chr20 57597970 57597970 1 + A C rs463312 57597969 + 57597949 57597989 41 ACCGCGGGGCCTCGGCCTTGCAGCTGGAGAGAATCAGCGTG ACCGCGGGGCCTCGGCCTTGCCGCTGGAGAGAATCAGCGTG < 41bp 0.818277782115692 0.587057289562923 0.3562709 0.2605843 prediction 0.462440985105537 Functional Loss - TUBB1 ENSG00000101162 CDS Human protein_coding chr20:57597969 chr20:57597970 nonsynonymous SNV 0.895 4 22 hm5C_associated_SNPs_74214 0 1 1 0 2 TUBB1 chr20:57597900 3'AG 57597900 Downstream 71bp
chr20 57597970 57597970 1 + A C rs463312 57597969 + 57597949 57597989 41 ACCGCGGGGCCTCGGCCTTGCAGCTGGAGAGAATCAGCGTG ACCGCGGGGCCTCGGCCTTGCCGCTGGAGAGAATCAGCGTG < 41bp 0.818277782115692 0.587057289562923 0.3562709 0.2605843 prediction 0.462440985105537 Functional Loss - TUBB1 ENSG00000101162 CDS Human protein_coding chr20:57597969 chr20:57597970 nonsynonymous SNV 0.895 4 22 hm5C_associated_SNPs_74214 0 1 1 0 2 TUBB1 chr20:57598008 5'GT 57598008 Upstream 39bp
chr2 235961301 235961301 1 + G T LUSC 235961299 + 235961279 235961319 41 TAGAGGTGGCCCAGCGCTGGCGGGAGCTGGCTGAGAAGCTG TAGAGGTGGCCCAGCGCTGGCGTGAGCTGGCTGAGAAGCTG < 41bp 0.89673166363848 0.665517694121132 0.85679036 0.34799823 prediction 0.462427939034696 Functional Loss - SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235961299 chr2:235961301 synonymous SNV . 0 23 hm5C_associated_SNPs_74217 0 0 0 0 2 SH3BP4 chr2:235961206 3'AG 235961206 Downstream 96bp
chr2 235961301 235961301 1 + G T LUSC 235961299 + 235961279 235961319 41 TAGAGGTGGCCCAGCGCTGGCGGGAGCTGGCTGAGAAGCTG TAGAGGTGGCCCAGCGCTGGCGTGAGCTGGCTGAGAAGCTG < 41bp 0.89673166363848 0.665517694121132 0.85679036 0.34799823 prediction 0.462427939034696 Functional Loss - SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235961299 chr2:235961301 synonymous SNV . 0 23 hm5C_associated_SNPs_74217 0 0 0 0 2 SH3BP4 chr2:235961394 5'GT 235961394 Upstream 94bp
chr6 35209602 35209602 1 + G A COAD 35209599 + 35209579 35209619 41 TCAGAGTCTGAGAATGGCTTCACGGTGAGCTGTGGGACCCC TCAGAGTCTGAGAATGGCTTCACAGTGAGCTGTGGGACCCC < 41bp 0.768776467877863 0.537564562787211 0.5877561 0.35013607 prediction 0.462423810181305 Functional Loss - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35209599 chr6:35209602 synonymous SNV . 0 24 hm5C_associated_SNPs_74218 0 0 0 0 1 SCUBE3 chr6:35209687 5'GT 35209687 Upstream 86bp
chr3 193854767 193854767 1 + G A UCEC 193854764 + 193854744 193854784 41 ATGCAGAGCTCGCGGCATTCCAAGCTGGAGAAGGCGGACAT ATGCAGAGCTCGCGGCATTCCAAACTGGAGAAGGCGGACAT < 41bp 0.75713823684382 0.525928415637671 0.46464676 0.31575817 prediction 0.462419642412298 Functional Loss - HES1 ENSG00000114315 CDS Human protein_coding chr3:193854764 chr3:193854767 synonymous SNV . 0 24 hm5C_associated_SNPs_74219 0 0 1 0 2 HES1 chr3:193854750 3'AG 193854750 Downstream 18bp
chr3 193854767 193854767 1 + G A UCEC 193854764 + 193854744 193854784 41 ATGCAGAGCTCGCGGCATTCCAAGCTGGAGAAGGCGGACAT ATGCAGAGCTCGCGGCATTCCAAACTGGAGAAGGCGGACAT < 41bp 0.75713823684382 0.525928415637671 0.46464676 0.31575817 prediction 0.462419642412298 Functional Loss - HES1 ENSG00000114315 CDS Human protein_coding chr3:193854764 chr3:193854767 synonymous SNV . 0 24 hm5C_associated_SNPs_74219 0 0 1 0 2 HES1 chr3:193854837 5'GT 193854837 Upstream 71bp
chr19 6897211 6897211 1 + G T LUAD 6897209 + 6897189 6897229 41 CCCTGTGGTCCTAACTCATCCTGCAAAAACCTGTCAGGGAG CCCTGTGGTCCTAACTCATCCTTCAAAAACCTGTCAGGGAG < 41bp 0.731209159780869 0.392158965588636 0.1656897 0.06453848 prediction 0.462418319561738 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6897209 chr19:6897211 nonsynonymous SNV 0.018 4 23 hm5C_associated_SNPs_74221 0 0 0 0 1 ADGRE1 chr19:6897160 3'AG 6897160 Downstream 52bp
chr1 181018349 181018349 1 + G T LUAD 181018346 + 181018326 181018366 41 CCCCATGGATGGCAGAGAACCTCGCGCCTGATCACTGGGAG CCCCATGGATGGCAGAGAACCTCTCGCCTGATCACTGGGAG < 41bp 0.731201336817664 0.33303322805433 0.26479053 0.059076488 prediction 0.462402673635328 Functional Loss - MR1 ENSG00000153029 CDS Human protein_coding chr1:181018346 chr1:181018349 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_74223 0 0 1 0 1 MR1 chr1:181018448 5'GT 181018448 Upstream 100bp
chr8 28013527 28013527 1 + G T UCEC 28013524 + 28013504 28013544 41 CCTGAGAGAGCTGGCACTTGCAAGAATGAAAGACCTCGGAA CCTGAGAGAGCTGGCACTTGCAATAATGAAAGACCTCGGAA < 41bp 0.924166663498114 0.692966319492825 0.78812087 0.19387871 prediction 0.462400688010578 Functional Loss - ELP3 ENSG00000134014 CDS Human protein_coding chr8:28013524 chr8:28013527 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_74225 0 0 1 0 2 ELP3 chr8:28013459 3'AG 28013459 Downstream 69bp
chr8 28013527 28013527 1 + G T UCEC 28013524 + 28013504 28013544 41 CCTGAGAGAGCTGGCACTTGCAAGAATGAAAGACCTCGGAA CCTGAGAGAGCTGGCACTTGCAATAATGAAAGACCTCGGAA < 41bp 0.924166663498114 0.692966319492825 0.78812087 0.19387871 prediction 0.462400688010578 Functional Loss - ELP3 ENSG00000134014 CDS Human protein_coding chr8:28013524 chr8:28013527 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_74225 0 0 1 0 2 ELP3 chr8:28013549 5'GT 28013549 Upstream 23bp
chr9 130206351 130206351 1 + T C KIRC 130206350 + 130206330 130206370 41 ACCACCAGAGCAAGCCCTTTCTGAAGCTTCATTCCAAGACC ACCACCAGAGCAAGCCCTTTCCGAAGCTTCATTCCAAGACC < 41bp 0.741958186265653 0.510759485818641 0.12123805 0.3715141 prediction 0.462397400894023 Functional Loss - ZNF79 ENSG00000196152 CDS Human protein_coding chr9:130206350 chr9:130206351 synonymous SNV . 0 22 hm5C_associated_SNPs_74226 0 0 0 0 1 ZNF79 chr9:130206308 3'AG 130206308 Downstream 44bp
chrX 55103008 55103008 1 + G T LUSC 55103005 + 55102985 55103025 41 CACACTTACACCCTTAGGTCCAGGAGCCCACTGAGGAAAAA CACACTTACACCCTTAGGTCCAGTAGCCCACTGAGGAAAAA < 41bp 0.731197289567035 0.34789897235371 0.073693395 0.005252689 prediction 0.462394579134069 Functional Loss - PAGE2B ENSG00000238269 CDS Human protein_coding chrX:55103005 chrX:55103008 stopgain 0.055 0 24 hm5C_associated_SNPs_74228 0 0 0 0 1 PAGE2B chrX:55103002 3'AG 55103002 Downstream 7bp
chr1 151502589 151502589 1 + G A rs41272459 151502586 + 151502566 151502606 41 TACGGGACAAGCTGCAGCGGCTGGAGGTCAGTGGTTCTGCC TACGGGACAAGCTGCAGCGGCTGAAGGTCAGTGGTTCTGCC < 41bp 0.76913560982262 0.537942626503711 0.3119455 0.22895688 prediction 0.462385966637819 Functional Loss - CGN ENSG00000143375 CDS Human protein_coding chr1:151502586 chr1:151502589 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_74231 0 0 0 0 1 CGN chr1:151502591 5'GT 151502591 Upstream 3bp
chr14 20978700 20978700 1 + G T LUAD 20978697 + 20978677 20978717 41 TGCTGGGCCTGGGGATGGGCCTGGGGTTGGGACTTCATATG TGCTGGGCCTGGGGATGGGCCTGTGGTTGGGACTTCATATG < 41bp 0.92483741539484 0.693645153197803 0.8029707 0.2843238 prediction 0.462384524394073 Functional Loss - RNASE10 ENSG00000182545 CDS Human protein_coding chr14:20978697 chr14:20978700 nonsynonymous SNV 0.978 4 24 hm5C_associated_SNPs_74232 0 0 0 0 1 RNASE10 chr14:20978626 3'AG 20978626 Downstream 75bp
chr1 21771621 21771621 1 + C T SKCM 21771619 + 21771599 21771639 41 TCCAGGGCTTCCAGTGGACTCTCCGAGGCCCTGATGTAGAA TCCAGGGCTTCCAGTGGACTCTTCGAGGCCCTGATGTAGAA < 41bp 0.731190961134607 0.478859671914302 0.20525256 0.045185894 prediction 0.462381922269215 Functional Loss - NBPF3 ENSG00000142794 CDS Human protein_coding chr1:21771619 chr1:21771621 synonymous SNV . 0 23 hm5C_associated_SNPs_74233 0 0 0 0 1 NBPF3 chr1:21771712 5'GT 21771712 Upstream 92bp
chr1 19018432 19018432 1 + A C rs2076019 19018431 + 19018411 19018451 41 GGCGCAGAGGACCAAGCTGACAGAGGCGCGTGTGCAGGTGA GGCGCAGAGGACCAAGCTGACCGAGGCGCGTGTGCAGGTGA < 41bp 0.731190326418555 0.451954890496966 0.89753044 0.42279416 prediction 0.462380652837111 Functional Loss - PAX7 ENSG00000009709 CDS Human protein_coding chr1:19018431 chr1:19018432 synonymous SNV . 0 22 hm5C_associated_SNPs_74234 0 0 0 0 1 PAX7 chr1:19018447 5'GT 19018447 Upstream 16bp
chr22 42209326 42209326 1 + G A rs75440668 42209323 + 42209303 42209343 41 GGCGATGTGGTGCTGCGCTTCCCGAGGATTGTGCACTATTA GGCGATGTGGTGCTGCGCTTCCCAAGGATTGTGCACTATTA < 41bp 0.756537339480766 0.525350988397388 0.30181202 0.10240346 prediction 0.462372702166756 Functional Loss - CCDC134 ENSG00000100147 CDS Human protein_coding chr22:42209323 chr22:42209326 synonymous SNV . 0 24 hm5C_associated_SNPs_74235 0 0 1 0 1 CCDC134 chr22:42209268 3'AG 42209268 Downstream 59bp
chr17 15903505 15903505 1 + G C SKCM 15903501 + 15903481 15903521 41 GGGAGCCGACGGGGCCGCTGCCGAGGACGGGGCGGACGAGG GGGAGCCGACGGGGCCGCTGCCGACGACGGGGCGGACGAGG < 41bp 0.763998079031325 0.532815557468649 0.9011282 0.7457797 prediction 0.462365043125352 Functional Loss - TTC19 ENSG00000011295 CDS Human protein_coding chr17:15903501 chr17:15903505 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_74236 0 0 1 0 2 TTC19 chr17:15903432 3'AG 15903432 Downstream 74bp
chr17 15903505 15903505 1 + G C SKCM 15903501 + 15903481 15903521 41 GGGAGCCGACGGGGCCGCTGCCGAGGACGGGGCGGACGAGG GGGAGCCGACGGGGCCGCTGCCGACGACGGGGCGGACGAGG < 41bp 0.763998079031325 0.532815557468649 0.9011282 0.7457797 prediction 0.462365043125352 Functional Loss - TTC19 ENSG00000011295 CDS Human protein_coding chr17:15903501 chr17:15903505 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_74236 0 0 1 0 2 TTC19 chr17:15903559 5'GT 15903559 Upstream 55bp
chr2 99763946 99763946 1 + G A SKCM 99763943 + 99763923 99763963 41 CACCCTTCATGTCCTCAACTCTGGGGAAGTTAAGGTAAGAC CACCCTTCATGTCCTCAACTCTGAGGAAGTTAAGGTAAGAC < 41bp 0.747443313413485 0.516265473414727 0.4942502 0.094522 prediction 0.462355679997516 Functional Loss - C2orf15 ENSG00000241962;ENSG00000273045 CDS Human other chr2:99763943 chr2:99763946 nonsynonymous SNV 0.004 1 24 hm5C_associated_SNPs_74238 0 0 0 0 2 C2orf15 chr2:99763865 3'AG 99763865 Downstream 82bp
chr2 99763946 99763946 1 + G A SKCM 99763943 + 99763923 99763963 41 CACCCTTCATGTCCTCAACTCTGGGGAAGTTAAGGTAAGAC CACCCTTCATGTCCTCAACTCTGAGGAAGTTAAGGTAAGAC < 41bp 0.747443313413485 0.516265473414727 0.4942502 0.094522 prediction 0.462355679997516 Functional Loss - C2orf15 ENSG00000241962;ENSG00000273045 CDS Human other chr2:99763943 chr2:99763946 nonsynonymous SNV 0.004 1 24 hm5C_associated_SNPs_74238 0 0 0 0 2 C2orf15 chr2:99763956 5'GT 99763956 Upstream 11bp
chr2 179238682 179238682 1 + C T SKCM 179238679 + 179238659 179238699 41 GTAGCCAATGAGAGCCGCCTCTCCATGTCAGAGTCTGTTTC GTAGCCAATGAGAGCCGCCTCTCTATGTCAGAGTCTGTTTC < 41bp 0.743453980276606 0.512277509339407 0.9596182 0.9201623 prediction 0.462352941874396 Functional Loss - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179238679 chr2:179238682 synonymous SNV . 0 24 hm5C_associated_SNPs_74239 0 0 1 0 2 OSBPL6 chr2:179238617 3'AG 179238617 Downstream 66bp
chr2 179238682 179238682 1 + C T SKCM 179238679 + 179238659 179238699 41 GTAGCCAATGAGAGCCGCCTCTCCATGTCAGAGTCTGTTTC GTAGCCAATGAGAGCCGCCTCTCTATGTCAGAGTCTGTTTC < 41bp 0.743453980276606 0.512277509339407 0.9596182 0.9201623 prediction 0.462352941874396 Functional Loss - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179238679 chr2:179238682 synonymous SNV . 0 24 hm5C_associated_SNPs_74239 0 0 1 0 2 OSBPL6 chr2:179238754 5'GT 179238754 Upstream 73bp
chr11 60699508 60699508 1 + C T STAD 60699506 + 60699486 60699526 41 ACTGGAGTGCCCCAGCATGTCCCCGTGCGCCTTGTCACTGT ACTGGAGTGCCCCAGCATGTCCTCGTGCGCCTTGTCACTGT < 41bp 0.731174716796844 0.482985386297649 0.017734349 0.026745826 prediction 0.462349433593689 Functional Loss - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60699506 chr11:60699508 nonsynonymous SNV 0.007 4 23 hm5C_associated_SNPs_74240 0 0 0 0 2 TMEM132A chr11:60699456 3'AG 60699456 Downstream 53bp
chr11 60699508 60699508 1 + C T STAD 60699506 + 60699486 60699526 41 ACTGGAGTGCCCCAGCATGTCCCCGTGCGCCTTGTCACTGT ACTGGAGTGCCCCAGCATGTCCTCGTGCGCCTTGTCACTGT < 41bp 0.731174716796844 0.482985386297649 0.017734349 0.026745826 prediction 0.462349433593689 Functional Loss - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60699506 chr11:60699508 nonsynonymous SNV 0.007 4 23 hm5C_associated_SNPs_74240 0 0 0 0 2 TMEM132A chr11:60699599 5'GT 60699599 Upstream 92bp
chr18 6876188 6876188 1 + G A GBM 6876185 + 6876165 6876205 41 TGAAGGAATTTTTCGACTTTCAGGATGTACTGCTAAAGTCA TGAAGGAATTTTTCGACTTTCAGAATGTACTGCTAAAGTCA < 41bp 0.753598585921732 0.52242413829319 0.8651048 0.4367218 prediction 0.462348895257084 Functional Loss - ARHGAP28 ENSG00000088756 CDS Human protein_coding chr18:6876185 chr18:6876188 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_74241 0 0 0 0 2 ARHGAP28 chr18:6876130 3'AG 6876130 Downstream 59bp
chr18 6876188 6876188 1 + G A GBM 6876185 + 6876165 6876205 41 TGAAGGAATTTTTCGACTTTCAGGATGTACTGCTAAAGTCA TGAAGGAATTTTTCGACTTTCAGAATGTACTGCTAAAGTCA < 41bp 0.753598585921732 0.52242413829319 0.8651048 0.4367218 prediction 0.462348895257084 Functional Loss - ARHGAP28 ENSG00000088756 CDS Human protein_coding chr18:6876185 chr18:6876188 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_74241 0 0 0 0 2 ARHGAP28 chr18:6876207 5'GT 6876207 Upstream 20bp
chr17 80696402 80696402 1 + A C UCEC 80696398 + 80696378 80696418 41 TTGAGGGGGAGGTGGCCAGCCTGGAGGCCCTCAGGAGCACG TTGAGGGGGAGGTGGCCAGCCTGGCGGCCCTCAGGAGCACG < 41bp 0.925612587634078 0.694438382780121 0.61552334 0.5666889 prediction 0.462348409707914 Functional Loss - FN3K ENSG00000167363 CDS Human protein_coding chr17:80696398 chr17:80696402 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_74242 0 0 1 0 1 FN3K chr17:80696365 3'AG 80696365 Downstream 38bp
chr12 132281825 132281825 1 + C T rs140589847 132281823 + 132281803 132281843 41 GCAAGCAGGCAGCGCCCCGGCCCGCGGCCCCCGCGGCCCAC GCAAGCAGGCAGCGCCCCGGCCTGCGGCCCCCGCGGCCCAC < 41bp 0.731173512323286 0.492086030603214 0.54896706 0.43183848 prediction 0.462347024646572 Functional Loss - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132281823 chr12:132281825 synonymous SNV . 0 23 hm5C_associated_SNPs_74243 0 0 1 0 1 SFSWAP chr12:132281905 5'GT 132281905 Upstream 81bp
chr19 41822332 41822332 1 + G A LAML 41822329 + 41822309 41822349 41 GGGCACTGGGGTGAGCTGAGCCGGACACCAGTCCCATCTAA GGGCACTGGGGTGAGCTGAGCCGAACACCAGTCCCATCTAA < 41bp 0.731165330390817 0.49025899348748 0.84526813 0.39503625 prediction 0.462330660781635 Functional Loss - CCDC97 ENSG00000142039 CDS Human protein_coding chr19:41822329 chr19:41822332 synonymous SNV . 0 24 hm5C_associated_SNPs_74247 0 0 1 0 1 CCDC97 chr19:41822289 3'AG 41822289 Downstream 44bp
chr2 69002528 69002528 1 + G A UCEC 69002525 + 69002505 69002545 41 GCGCAGCAGCTCTACTACTACAAGGATGAAGAGGACACGAA GCGCAGCAGCTCTACTACTACAAAGATGAAGAGGACACGAA < 41bp 0.754527411512743 0.523363208894077 0.56715965 0.2634579 prediction 0.462328405237334 Functional Loss - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69002525 chr2:69002528 synonymous SNV . 0 24 hm5C_associated_SNPs_74249 0 0 0 0 1 ARHGAP25 chr2:69002552 5'GT 69002552 Upstream 25bp
chr6 100057097 100057097 1 + G A SKCM 100057094 + 100057074 100057114 41 AGCATTGCGAGACGTCCAGCCAGGGGAGGAGCTGACAGTGT AGCATTGCGAGACGTCCAGCCAGAGGAGGAGCTGACAGTGT < 41bp 0.731162145711503 0.490719147169149 0.9262016 0.9226363 prediction 0.462324291423006 Functional Loss - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100057094 chr6:100057097 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_74251 0 0 0 0 2 PRDM13 chr6:100057063 3'AG 100057063 Downstream 35bp
chr6 100057097 100057097 1 + G A SKCM 100057094 + 100057074 100057114 41 AGCATTGCGAGACGTCCAGCCAGGGGAGGAGCTGACAGTGT AGCATTGCGAGACGTCCAGCCAGAGGAGGAGCTGACAGTGT < 41bp 0.731162145711503 0.490719147169149 0.9262016 0.9226363 prediction 0.462324291423006 Functional Loss - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100057094 chr6:100057097 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_74251 0 0 0 0 2 PRDM13 chr6:100057183 5'GT 100057183 Upstream 87bp
chr2 27147901 27147901 1 + G T LUSC 27147898 + 27147878 27147918 41 GCCCTCCACGTGGGGATCACCTGGTGGGCACCCAAGGTAAC GCCCTCCACGTGGGGATCACCTGTTGGGCACCCAAGGTAAC < 41bp 0.731161255599537 0.328099792301844 0.45556024 0.04806328 prediction 0.462322511199075 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27147898 chr2:27147901 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_74252 0 0 1 0 1 DPYSL5 chr2:27147913 5'GT 27147913 Upstream 13bp
chr1 40954820 40954820 1 + G T SARC 40954817 + 40954797 40954837 41 CCCAGGAAGAGTGGGGGCAGCTGGCTCCTGCTCACCAGAAT CCCAGGAAGAGTGGGGGCAGCTGTCTCCTGCTCACCAGAAT < 41bp 0.73115895847454 0.335631784828059 0.12745953 0.06477001 prediction 0.46231791694908 Functional Loss - ZFP69 ENSG00000187815 CDS Human protein_coding chr1:40954817 chr1:40954820 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_74254 0 0 0 0 2 ZFP69 chr1:40954760 3'AG 40954760 Downstream 61bp
chr1 40954820 40954820 1 + G T SARC 40954817 + 40954797 40954837 41 CCCAGGAAGAGTGGGGGCAGCTGGCTCCTGCTCACCAGAAT CCCAGGAAGAGTGGGGGCAGCTGTCTCCTGCTCACCAGAAT < 41bp 0.73115895847454 0.335631784828059 0.12745953 0.06477001 prediction 0.46231791694908 Functional Loss - ZFP69 ENSG00000187815 CDS Human protein_coding chr1:40954817 chr1:40954820 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_74254 0 0 0 0 2 ZFP69 chr1:40954886 5'GT 40954886 Upstream 67bp
chr6 26448522 26448522 1 + G C BLCA 26448518 + 26448498 26448538 41 GCCCTGGATCGCGGCCCTGGCAGGGACCCTGCCTATCTCGT GCCCTGGATCGCGGCCCTGGCAGGCACCCTGCCTATCTCGT < 41bp 0.866293111893358 0.635135150996406 0.9468878 0.9176364 prediction 0.462315921793905 Functional Loss - BTN3A3 ENSG00000111801 CDS Human protein_coding chr6:26448518 chr6:26448522 synonymous SNV . 0 25 hm5C_associated_SNPs_74255 0 0 0 0 1 BTN3A3 chr6:26448476 3'AG 26448476 Downstream 47bp
chr19 49979782 49979782 1 + G A PRAD 49979779 + 49979759 49979799 41 AGATGCAAGGCTTGCTGGAGCGCGTGAACACGGAGATACAC AGATGCAAGGCTTGCTGGAGCGCATGAACACGGAGATACAC < 41bp 0.731157635673744 0.487214839815643 0.33378512 0.18820953 prediction 0.462315271347489 Functional Loss - FLT3LG ENSG00000090554 CDS Human protein_coding chr19:49979779 chr19:49979782 nonsynonymous SNV 0.586 2 24 hm5C_associated_SNPs_74256 0 0 1 0 1 FLT3LG chr19:49979823 5'GT 49979823 Upstream 42bp
chr2 219292725 219292725 1 + G T SARC 219292722 + 219292702 219292742 41 GCGTGGCTTCTGGCATGAAGCACGTGGAGACCAACTCCTAT GCGTGGCTTCTGGCATGAAGCACTTGGAGACCAACTCCTAT < 41bp 0.731148262185642 0.332299805768958 0.2903322 0.11731908 prediction 0.462296524371283 Functional Loss - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219292722 chr2:219292725 nonsynonymous SNV 0.003 2 24 hm5C_associated_SNPs_74264 0 0 1 0 2 VIL1 chr2:219292688 3'AG 219292688 Downstream 38bp
chr2 219292725 219292725 1 + G T SARC 219292722 + 219292702 219292742 41 GCGTGGCTTCTGGCATGAAGCACGTGGAGACCAACTCCTAT GCGTGGCTTCTGGCATGAAGCACTTGGAGACCAACTCCTAT < 41bp 0.731148262185642 0.332299805768958 0.2903322 0.11731908 prediction 0.462296524371283 Functional Loss - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219292722 chr2:219292725 nonsynonymous SNV 0.003 2 24 hm5C_associated_SNPs_74264 0 0 1 0 2 VIL1 chr2:219292796 5'GT 219292796 Upstream 72bp
chr16 67235458 67235458 1 + G A rs151223840 67235455 + 67235435 67235475 41 AGTGCAGCACCAATGGGCGACGAGATGGCTCATCACCTGTA AGTGCAGCACCAATGGGCGACGAAATGGCTCATCACCTGTA < 41bp 0.731144665246346 0.484660067528598 0.22642982 0.05175236 prediction 0.462289330492692 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67235455 chr16:67235458 synonymous SNV . 0 24 hm5C_associated_SNPs_74265 0 0 0 0 2 ELMO3 chr16:67235423 3'AG 67235423 Downstream 36bp
chr16 67235458 67235458 1 + G A rs151223840 67235455 + 67235435 67235475 41 AGTGCAGCACCAATGGGCGACGAGATGGCTCATCACCTGTA AGTGCAGCACCAATGGGCGACGAAATGGCTCATCACCTGTA < 41bp 0.731144665246346 0.484660067528598 0.22642982 0.05175236 prediction 0.462289330492692 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67235455 chr16:67235458 synonymous SNV . 0 24 hm5C_associated_SNPs_74265 0 0 0 0 2 ELMO3 chr16:67235545 5'GT 67235545 Upstream 88bp
chr15 85451966 85451966 1 + G A SKCM 85451963 + 85451943 85451983 41 TTTCAGATCTTCCTGAGCTACACGAAGGCTGGCTCCAGCTT TTTCAGATCTTCCTGAGCTACACAAAGGCTGGCTCCAGCTT < 41bp 0.761222490534885 0.530082383967795 0.10309455 0.0276452 prediction 0.462280213134179 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85451963 chr15:85451966 synonymous SNV . 0 24 hm5C_associated_SNPs_74268 0 0 0 0 2 SLC28A1 chr15:85451949 3'AG 85451949 Downstream 18bp
chr15 85451966 85451966 1 + G A SKCM 85451963 + 85451943 85451983 41 TTTCAGATCTTCCTGAGCTACACGAAGGCTGGCTCCAGCTT TTTCAGATCTTCCTGAGCTACACAAAGGCTGGCTCCAGCTT < 41bp 0.761222490534885 0.530082383967795 0.10309455 0.0276452 prediction 0.462280213134179 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85451963 chr15:85451966 synonymous SNV . 0 24 hm5C_associated_SNPs_74268 0 0 0 0 2 SLC28A1 chr15:85452026 5'GT 85452026 Upstream 61bp
chr4 56734654 56734654 1 + G T LGG 56734652 + 56734632 56734672 41 CTCGAATGCGGAAGCCTTTGCAGAAAAATTGTCCAGAGAGC CTCGAATGCGGAAGCCTTTGCATAAAAATTGTCCAGAGAGC < 41bp 0.731139151102844 0.389808300244716 0.17379293 0.08681515 prediction 0.462278302205689 Functional Loss - EXOC1 ENSG00000090989 CDS Human protein_coding chr4:56734652 chr4:56734654 stopgain 0.998 1 23 hm5C_associated_SNPs_74269 0 0 1 0 1 EXOC1 chr4:56734689 5'GT 56734689 Upstream 36bp
chr1 170964581 170964581 1 + G T LUAD 170964579 + 170964559 170964599 41 TCTTGGTTCCTACAGGAAAGCGGTGGCCCAGTATTTCCCCC TCTTGGTTCCTACAGGAAAGCGTTGGCCCAGTATTTCCCCC < 41bp 0.73113392663337 0.36652550460995 0.3418588 0.09012747 prediction 0.46226785326674 Functional Loss - MROH9 ENSG00000117501 CDS Human protein_coding chr1:170964579 chr1:170964581 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_74271 0 0 0 0 2 MROH9 chr1:170964530 3'AG 170964530 Downstream 52bp
chr1 170964581 170964581 1 + G T LUAD 170964579 + 170964559 170964599 41 TCTTGGTTCCTACAGGAAAGCGGTGGCCCAGTATTTCCCCC TCTTGGTTCCTACAGGAAAGCGTTGGCCCAGTATTTCCCCC < 41bp 0.73113392663337 0.36652550460995 0.3418588 0.09012747 prediction 0.46226785326674 Functional Loss - MROH9 ENSG00000117501 CDS Human protein_coding chr1:170964579 chr1:170964581 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_74271 0 0 0 0 2 MROH9 chr1:170964672 5'GT 170964672 Upstream 92bp
chr1 196953137 196953137 1 + A C STAD 196953136 + 196953116 196953156 41 AAATGGTCATTCTGAATCTTCAGGACTAATACATCTGGAAG AAATGGTCATTCTGAATCTTCCGGACTAATACATCTGGAAG < 41bp 0.796409742699037 0.565277866060644 0.66100353 0.6121837 prediction 0.462263753276787 Functional Loss - CFHR5 ENSG00000134389 CDS Human protein_coding chr1:196953136 chr1:196953137 synonymous SNV . 0 22 hm5C_associated_SNPs_74272 0 0 0 0 1 CFHR5 chr1:196953091 3'AG 196953091 Downstream 47bp
chrX 40450535 40450535 1 + G A UCEC 40450532 + 40450512 40450552 41 GGGTAACCTGTTTCATCGTCCTCGGGCTACCGTCATGGTGA GGGTAACCTGTTTCATCGTCCTCAGGCTACCGTCATGGTGA < 41bp 0.740371370807102 0.509247996104385 0.05556363 0.02541855 prediction 0.462246749405435 Functional Loss - ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40450532 chrX:40450535 nonsynonymous SNV 0.983 2 24 hm5C_associated_SNPs_74279 0 0 1 0 2 ATP6AP2 chrX:40450486 3'AG 40450486 Downstream 50bp
chrX 40450535 40450535 1 + G A UCEC 40450532 + 40450512 40450552 41 GGGTAACCTGTTTCATCGTCCTCGGGCTACCGTCATGGTGA GGGTAACCTGTTTCATCGTCCTCAGGCTACCGTCATGGTGA < 41bp 0.740371370807102 0.509247996104385 0.05556363 0.02541855 prediction 0.462246749405435 Functional Loss - ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40450532 chrX:40450535 nonsynonymous SNV 0.983 2 24 hm5C_associated_SNPs_74279 0 0 1 0 2 ATP6AP2 chrX:40450617 5'GT 40450617 Upstream 83bp
chr16 78005774 78005774 1 + G A SKCM 78005771 + 78005751 78005791 41 AGGAGGCCATGCAGCGGATTCACGACCGAGGGAACATTGGC AGGAGGCCATGCAGCGGATTCACAACCGAGGGAACATTGGC < 41bp 0.743356457429191 0.512236302555981 0.7664861 0.29277533 prediction 0.462240309746421 Functional Loss - VAT1L ENSG00000171724 CDS Human protein_coding chr16:78005771 chr16:78005774 nonsynonymous SNV 0.984 1 24 hm5C_associated_SNPs_74283 0 0 0 0 2 VAT1L chr16:78005747 3'AG 78005747 Downstream 28bp
chr16 78005774 78005774 1 + G A SKCM 78005771 + 78005751 78005791 41 AGGAGGCCATGCAGCGGATTCACGACCGAGGGAACATTGGC AGGAGGCCATGCAGCGGATTCACAACCGAGGGAACATTGGC < 41bp 0.743356457429191 0.512236302555981 0.7664861 0.29277533 prediction 0.462240309746421 Functional Loss - VAT1L ENSG00000171724 CDS Human protein_coding chr16:78005771 chr16:78005774 nonsynonymous SNV 0.984 1 24 hm5C_associated_SNPs_74283 0 0 0 0 2 VAT1L chr16:78005830 5'GT 78005830 Upstream 57bp
chr17 18673250 18673250 1 + G A UCEC 18673247 + 18673227 18673267 41 TGTTCCCTTCCAGGGAGGTGCTCGACGTGTCCCTTCTCTTC TGTTCCCTTCCAGGGAGGTGCTCAACGTGTCCCTTCTCTTC < 41bp 0.764040904521914 0.532921968617382 0.8739778 0.52678883 prediction 0.462237871809065 Functional Loss - FBXW10 ENSG00000171931 CDS Human protein_coding chr17:18673247 chr17:18673250 nonsynonymous SNV 0.737 0 24 hm5C_associated_SNPs_74285 0 0 0 0 1 FBXW10 chr17:18673240 3'AG 18673240 Downstream 11bp
chr10 134940794 134940794 1 + G A UCEC 134940791 + 134940771 134940811 41 ATCTGTGGGGTCACGGCTGCCACGAACATCAGGAATTACGG ATCTGTGGGGTCACGGCTGCCACAAACATCAGGAATTACGG < 41bp 0.731117219071479 0.495024674588096 0.027719498 0.031056285 prediction 0.462234438142958 Functional Loss - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134940791 chr10:134940794 synonymous SNV . 0 24 hm5C_associated_SNPs_74287 0 0 0 0 3 ADGRA1 chr10:134940737 3'AG 134940737 Downstream 58bp
chr10 134940794 134940794 1 + G A UCEC 134940791 + 134940771 134940811 41 ATCTGTGGGGTCACGGCTGCCACGAACATCAGGAATTACGG ATCTGTGGGGTCACGGCTGCCACAAACATCAGGAATTACGG < 41bp 0.731117219071479 0.495024674588096 0.027719498 0.031056285 prediction 0.462234438142958 Functional Loss - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134940791 chr10:134940794 synonymous SNV . 0 24 hm5C_associated_SNPs_74287 0 0 0 0 3 ADGRA1 chr10:134940832 5'GT 134940832 Upstream 39bp
chr10 134940794 134940794 1 + G A UCEC 134940791 + 134940771 134940811 41 ATCTGTGGGGTCACGGCTGCCACGAACATCAGGAATTACGG ATCTGTGGGGTCACGGCTGCCACAAACATCAGGAATTACGG < 41bp 0.731117219071479 0.495024674588096 0.027719498 0.031056285 prediction 0.462234438142958 Functional Loss - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134940791 chr10:134940794 synonymous SNV . 0 24 hm5C_associated_SNPs_74287 0 0 0 0 3 ADGRA1 chr10:134940835 5'GT 134940835 Upstream 42bp
chr5 31317988 31317988 1 + G T LUAD 31317985 + 31317965 31318005 41 ATCCACCCCACGGGACTGAGCACGGGGGCTCTGGTTGCCAT ATCCACCCCACGGGACTGAGCACTGGGGCTCTGGTTGCCAT < 41bp 0.731116044910979 0.341623048949802 0.7124847 0.1193704 prediction 0.462232089821959 Functional Loss - CDH6 ENSG00000113361 CDS Human protein_coding chr5:31317985 chr5:31317988 synonymous SNV . 0 24 hm5C_associated_SNPs_74288 0 0 0 0 1 CDH6 chr5:31318031 5'GT 31318031 Upstream 44bp
chr5 31317987 31317987 1 + C T PRAD 31317985 + 31317965 31318005 41 ATCCACCCCACGGGACTGAGCACGGGGGCTCTGGTTGCCAT ATCCACCCCACGGGACTGAGCATGGGGGCTCTGGTTGCCAT < 41bp 0.731116044910979 0.454074185869734 0.7124847 0.6266769 prediction 0.462232089821959 Functional Loss - CDH6 ENSG00000113361 CDS Human protein_coding chr5:31317985 chr5:31317987 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_74289 0 0 0 0 1 CDH6 chr5:31318031 5'GT 31318031 Upstream 45bp
chr11 119050942 119050942 1 + G A UCEC 119050939 + 119050919 119050959 41 TGAACTTGGCCTCCTGCCAGCTAGATCCTGCTGGGCTGCGC TGAACTTGGCCTCCTGCCAGCTAAATCCTGCTGGGCTGCGC < 41bp 0.764482443220588 0.533366478451086 0.25279146 0.37929937 prediction 0.462231929539004 Functional Loss - NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119050939 chr11:119050942 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_74290 0 0 1 0 1 NLRX1 chr11:119050997 5'GT 119050997 Upstream 56bp
chr1 110018286 110018286 1 + G A LUAD 110018283 + 110018263 110018303 41 GTTCGCTGCAACAACGAAGCCAAGGACGTGAGCTCCATCAT GTTCGCTGCAACAACGAAGCCAAAGACGTGAGCTCCATCAT < 41bp 0.765028263496232 0.53391542267703 0.07946494 0.035839587 prediction 0.462225681638404 Functional Loss - SYPL2 ENSG00000143028 CDS Human protein_coding chr1:110018283 chr1:110018286 synonymous SNV . 0 24 hm5C_associated_SNPs_74293 0 0 0 0 2 SYPL2 chr1:110018203 3'AG 110018203 Downstream 84bp
chr1 110018286 110018286 1 + G A LUAD 110018283 + 110018263 110018303 41 GTTCGCTGCAACAACGAAGCCAAGGACGTGAGCTCCATCAT GTTCGCTGCAACAACGAAGCCAAAGACGTGAGCTCCATCAT < 41bp 0.765028263496232 0.53391542267703 0.07946494 0.035839587 prediction 0.462225681638404 Functional Loss - SYPL2 ENSG00000143028 CDS Human protein_coding chr1:110018283 chr1:110018286 synonymous SNV . 0 24 hm5C_associated_SNPs_74293 0 0 0 0 2 SYPL2 chr1:110018327 5'GT 110018327 Upstream 42bp
chr16 1033825 1033825 1 + C T HNSC 1033823 + 1033803 1033843 41 CCCCGACTACAAGTACCAGCCACGGCGCAGGAAGAGCGCCA CCCCGACTACAAGTACCAGCCATGGCGCAGGAAGAGCGCCA < 41bp 0.800060761082397 0.568948256092077 0.24653685 0.2250838 prediction 0.462225009980639 Functional Loss - SOX8 ENSG00000005513 CDS Human protein_coding chr16:1033823 chr16:1033825 nonsynonymous SNV 0.865 5 23 hm5C_associated_SNPs_74294 0 0 0 0 1 SOX8 chr16:1033728 3'AG 1033728 Downstream 98bp
chrX 102968599 102968599 1 + T C UCEC 102968598 + 102968578 102968618 41 ATTGCCTTCACGTAGGACACCTACAACATCCAGCGACAGAA ATTGCCTTCACGTAGGACACCCACAACATCCAGCGACAGAA < 41bp 0.795159663152747 0.564047826868181 0.8472864 0.04527092 prediction 0.462223672569133 Functional Loss - TMEM31;GLRA4 ENSG00000179363;ENSG00000188828 exonic;splicing Human other chrX:102968598 chrX:102968599 synonymous SNV 0.993 0 22 hm5C_associated_SNPs_74296 0 0 0 0 1 GLRA4;TMEM31 chrX:102968522 3'AG 102968522 Downstream 78bp
chr19 5744516 5744516 1 + G A SKCM 5744513 + 5744493 5744533 41 TTGCGATGCTTGTAGTGAATCAAGGGAAGGTAAGTAACTGC TTGCGATGCTTGTAGTGAATCAAAGGAAGGTAAGTAACTGC < 41bp 0.73111152579278 0.491932083670929 0.8844427 0.6752783 prediction 0.46222305158556 Functional Loss - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5744513 chr19:5744516 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_74298 0 0 0 0 3 CATSPERD chr19:5744438 3'AG 5744438 Downstream 79bp
chr19 5744516 5744516 1 + G A SKCM 5744513 + 5744493 5744533 41 TTGCGATGCTTGTAGTGAATCAAGGGAAGGTAAGTAACTGC TTGCGATGCTTGTAGTGAATCAAAGGAAGGTAAGTAACTGC < 41bp 0.73111152579278 0.491932083670929 0.8844427 0.6752783 prediction 0.46222305158556 Functional Loss - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5744513 chr19:5744516 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_74298 0 0 0 0 3 CATSPERD chr19:5744492 3'AG 5744492 Downstream 25bp
chr19 5744516 5744516 1 + G A SKCM 5744513 + 5744493 5744533 41 TTGCGATGCTTGTAGTGAATCAAGGGAAGGTAAGTAACTGC TTGCGATGCTTGTAGTGAATCAAAGGAAGGTAAGTAACTGC < 41bp 0.73111152579278 0.491932083670929 0.8844427 0.6752783 prediction 0.46222305158556 Functional Loss - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5744513 chr19:5744516 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_74298 0 0 0 0 3 CATSPERD chr19:5744521 5'GT 5744521 Upstream 6bp
chr11 67257834 67257834 1 + G A rs141715817 67257831 + 67257811 67257851 41 ATCCAGCTGGACCAGCAGATCACGCCGCTGCTGCTCAACTA ATCCAGCTGGACCAGCAGATCACACCGCTGCTGCTCAACTA < 41bp 0.770195687864955 0.539085813674342 0.62871885 0.28233093 prediction 0.462219748381225 Functional Loss - AIP ENSG00000110711 CDS Human protein_coding chr11:67257831 chr11:67257834 synonymous SNV . 0 24 hm5C_associated_SNPs_74300 0 0 1 0 2 AIP chr11:67257787 3'AG 67257787 Downstream 48bp
chr11 67257834 67257834 1 + G A rs141715817 67257831 + 67257811 67257851 41 ATCCAGCTGGACCAGCAGATCACGCCGCTGCTGCTCAACTA ATCCAGCTGGACCAGCAGATCACACCGCTGCTGCTCAACTA < 41bp 0.770195687864955 0.539085813674342 0.62871885 0.28233093 prediction 0.462219748381225 Functional Loss - AIP ENSG00000110711 CDS Human protein_coding chr11:67257831 chr11:67257834 synonymous SNV . 0 24 hm5C_associated_SNPs_74300 0 0 1 0 2 AIP chr11:67257928 5'GT 67257928 Upstream 95bp
chr11 60565959 60565959 1 + G A LUAD 60565956 + 60565936 60565976 41 CATCCTACCAGAGTGTGATTCAAGGCGACGCACAACACAAG CATCCTACCAGAGTGTGATTCAAAGCGACGCACAACACAAG < 41bp 0.772551184437708 0.541443141216805 0.8964816 0.70393014 prediction 0.462216086441806 Functional Loss - MS4A10 ENSG00000172689 CDS Human protein_coding chr11:60565956 chr11:60565959 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_74301 0 0 0 0 2 MS4A10 chr11:60565869 3'AG 60565869 Downstream 91bp
chr11 60565959 60565959 1 + G A LUAD 60565956 + 60565936 60565976 41 CATCCTACCAGAGTGTGATTCAAGGCGACGCACAACACAAG CATCCTACCAGAGTGTGATTCAAAGCGACGCACAACACAAG < 41bp 0.772551184437708 0.541443141216805 0.8964816 0.70393014 prediction 0.462216086441806 Functional Loss - MS4A10 ENSG00000172689 CDS Human protein_coding chr11:60565956 chr11:60565959 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_74301 0 0 0 0 2 MS4A10 chr11:60565987 5'GT 60565987 Upstream 29bp
chr2 234628319 234628319 1 + A T LUAD 234628315 + 234628295 234628335 41 GGGGGCATCAACTGTGCCAACGGGAAGCCACTATCTCAGGT GGGGGCATCAACTGTGCCAACGGGTAGCCACTATCTCAGGT < 41bp 0.86115937743754 0.630052424585478 0.4031318 0.24162021 prediction 0.462213905704123 Functional Loss - UGT1A4 ENSG00000244474 CDS Human protein_coding chr2:234628315 chr2:234628319 stopgain 0.007 0 25 hm5C_associated_SNPs_74302 0 0 0 0 1 UGT1A4 chr2:234628333 5'GT 234628333 Upstream 15bp
chr15 75562445 75562445 1 + G C BLCA 75562441 + 75562421 75562461 41 GAAGTGAGCCTGGACAACAACGTGGAGCCTGCACCAGGAGC GAAGTGAGCCTGGACAACAACGTGCAGCCTGCACCAGGAGC < 41bp 0.731104434872967 0.446991069284519 0.54335815 0.28156847 prediction 0.462208869745934 Functional Loss - GOLGA6C ENSG00000167195 CDS Human protein_coding chr15:75562441 chr15:75562445 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_74303 0 0 0 0 1 GOLGA6C chr15:75562413 3'AG 75562413 Downstream 33bp
chr3 39431077 39431077 1 + G A GBM 39431074 + 39431054 39431094 41 ACCTCTGGATCTCCTTAAAACACGCCTGCAAACCCTCCAGC ACCTCTGGATCTCCTTAAAACACACCTGCAAACCCTCCAGC < 41bp 0.731103598045794 0.481734682311473 0.20795798 0.032866985 prediction 0.462207196091589 Functional Loss - SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431074 chr3:39431077 nonsynonymous SNV 0.987 4 24 hm5C_associated_SNPs_74304 2 0 0 0 2 SLC25A38 chr3:39430986 3'AG 39430986 Downstream 92bp
chr3 39431077 39431077 1 + G A GBM 39431074 + 39431054 39431094 41 ACCTCTGGATCTCCTTAAAACACGCCTGCAAACCCTCCAGC ACCTCTGGATCTCCTTAAAACACACCTGCAAACCCTCCAGC < 41bp 0.731103598045794 0.481734682311473 0.20795798 0.032866985 prediction 0.462207196091589 Functional Loss - SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431074 chr3:39431077 nonsynonymous SNV 0.987 4 24 hm5C_associated_SNPs_74304 2 0 0 0 2 SLC25A38 chr3:39431107 5'GT 39431107 Upstream 31bp
chr11 15260505 15260505 1 + G C UCEC 15260501 + 15260481 15260521 41 GGGCATGCTGTCTGAAAAACCAAGGTCTGGGACTCCTGCTG GGGCATGCTGTCTGAAAAACCAAGCTCTGGGACTCCTGCTG < 41bp 0.859534086229753 0.628432647332814 0.7996317 0.1874657 prediction 0.462202877793878 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15260501 chr11:15260505 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_74306 0 0 0 0 1 INSC chr11:15260465 3'AG 15260465 Downstream 41bp
chr20 30602742 30602742 1 + C T SKCM 30602740 + 30602720 30602760 41 CCATCCGAAGGCTGGTGTTCCCCAAGGCCGGGCGCCGGGCA CCATCCGAAGGCTGGTGTTCCCTAAGGCCGGGCGCCGGGCA < 41bp 0.731093961561251 0.469059255022626 0.841344 0.22345123 prediction 0.462187923122501 Functional Loss - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30602740 chr20:30602742 synonymous SNV . 0 23 hm5C_associated_SNPs_74313 0 0 0 0 1 CCM2L chr20:30602707 3'AG 30602707 Downstream 36bp
chr3 151545396 151545396 1 + C T LUSC 151545394 + 151545374 151545414 41 ACCCAGATGTCAAGATCAAACTCAAGATCCAGTCTTTAATT ACCCAGATGTCAAGATCAAACTTAAGATCCAGTCTTTAATT < 41bp 0.833565184536316 0.602482838920969 0.10242957 0.056858927 prediction 0.462164691230694 Functional Loss - AADAC ENSG00000114771 CDS Human protein_coding chr3:151545394 chr3:151545396 synonymous SNV . 0 23 hm5C_associated_SNPs_74318 0 0 0 0 1 AADAC chr3:151545364 3'AG 151545364 Downstream 33bp
chr18 44030707 44030707 1 + G T LUAD 44030704 + 44030684 44030724 41 GGACAGGTTGGGTAATGTGACTCGGGGAGCTGTACAGAACA GGACAGGTTGGGTAATGTGACTCTGGGAGCTGTACAGAACA < 41bp 0.731082208999878 0.33487493696035 0.053539008 0.03462568 prediction 0.462164417999756 Functional Loss - RNF165 ENSG00000141622 CDS Human protein_coding chr18:44030704 chr18:44030707 nonsynonymous SNV 0.988 2 24 hm5C_associated_SNPs_74319 0 0 0 0 2 RNF165 chr18:44030667 3'AG 44030667 Downstream 41bp
chr18 44030707 44030707 1 + G T LUAD 44030704 + 44030684 44030724 41 GGACAGGTTGGGTAATGTGACTCGGGGAGCTGTACAGAACA GGACAGGTTGGGTAATGTGACTCTGGGAGCTGTACAGAACA < 41bp 0.731082208999878 0.33487493696035 0.053539008 0.03462568 prediction 0.462164417999756 Functional Loss - RNF165 ENSG00000141622 CDS Human protein_coding chr18:44030704 chr18:44030707 nonsynonymous SNV 0.988 2 24 hm5C_associated_SNPs_74319 0 0 0 0 2 RNF165 chr18:44030762 5'GT 44030762 Upstream 56bp
chr1 45479413 45479413 1 + C T UCEC 45479411 + 45479391 45479431 41 GTTCCAAGCCATCACCCTTACCCGACAACGACTGGCTGGAC GTTCCAAGCCATCACCCTTACCTGACAACGACTGGCTGGAC < 41bp 0.841499571659274 0.610425555630729 0.18644547 0.25756177 prediction 0.462148032057091 Functional Loss - UROD ENSG00000126088 CDS Human protein_coding chr1:45479411 chr1:45479413 stopgain 1.000 1 23 hm5C_associated_SNPs_74320 0 0 1 0 1 UROD chr1:45479463 5'GT 45479463 Upstream 51bp
chr8 27657117 27657117 1 + T C STAD 27657116 + 27657096 27657136 41 CCCAAGCTCTACGGAATGTCCTAGGGCTTGGCAATGTTCAG CCCAAGCTCTACGGAATGTCCCAGGGCTTGGCAATGTTCAG < 41bp 0.775903792032527 0.544833544413065 0.07167849 0.21846196 prediction 0.462140495238924 Functional Loss - ESCO2 ENSG00000171320 CDS Human protein_coding chr8:27657116 chr8:27657117 synonymous SNV . 0 22 hm5C_associated_SNPs_74322 0 0 1 0 1 ESCO2 chr8:27657058 3'AG 27657058 Downstream 60bp
chr7 5870880 5870880 1 + G A rs74373007 5870877 + 5870857 5870897 41 GACTTGCGTAGGAGAGCAGACACGAGGACATGAGCCAGTTC GACTTGCGTAGGAGAGCAGACACAAGGACATGAGCCAGTTC < 41bp 0.744057006618107 0.512992639766433 0.47736672 0.5747307 prediction 0.462128733703347 Functional Loss - ZNF815P ENSG00000235944 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:5870877 chr7:5870880 . . 0 24 hm5C_associated_SNPs_74325 0 0 0 2 2 ZNF815P chr7:5870812 3'AG 5870812 Downstream 69bp
chr7 5870880 5870880 1 + G A rs74373007 5870877 + 5870857 5870897 41 GACTTGCGTAGGAGAGCAGACACGAGGACATGAGCCAGTTC GACTTGCGTAGGAGAGCAGACACAAGGACATGAGCCAGTTC < 41bp 0.744057006618107 0.512992639766433 0.47736672 0.5747307 prediction 0.462128733703347 Functional Loss - ZNF815P ENSG00000235944 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:5870877 chr7:5870880 . . 0 24 hm5C_associated_SNPs_74325 0 0 0 2 2 ZNF815P chr7:5870914 5'GT 5870914 Upstream 35bp
chr2 242509595 242509595 1 + G A SKCM 242509592 + 242509572 242509612 41 GCGGTGGCCGCGGGGCTGGCCGTGGACTGTGTGAGGCAGGC GCGGTGGCCGCGGGGCTGGCCGTAGACTGTGTGAGGCAGGC < 41bp 0.743210688103029 0.512153867805107 0.82917625 0.64264494 prediction 0.462113640595844 Functional Loss - BOK ENSG00000176720 CDS Human protein_coding chr2:242509592 chr2:242509595 synonymous SNV . 0 24 hm5C_associated_SNPs_74330 0 0 1 0 1 BOK chr2:242509540 3'AG 242509540 Downstream 56bp
chr17 79968738 79968738 1 + G C UCEC 79968734 + 79968714 79968754 41 CTACAGGGCTTCTTCCGCCCCAGCGAGACAGGTGGGCAGCG CTACAGGGCTTCTTCCGCCCCAGCCAGACAGGTGGGCAGCG < 41bp 0.731055027979229 0.434591672591871 0.58781683 0.13538581 prediction 0.462110055958457 Functional Loss - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79968734 chr17:79968738 nonsynonymous SNV 0.828 4 25 hm5C_associated_SNPs_74331 0 0 1 0 2 ASPSCR1 chr17:79968678 3'AG 79968678 Downstream 61bp
chr17 79968738 79968738 1 + G C UCEC 79968734 + 79968714 79968754 41 CTACAGGGCTTCTTCCGCCCCAGCGAGACAGGTGGGCAGCG CTACAGGGCTTCTTCCGCCCCAGCCAGACAGGTGGGCAGCG < 41bp 0.731055027979229 0.434591672591871 0.58781683 0.13538581 prediction 0.462110055958457 Functional Loss - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79968734 chr17:79968738 nonsynonymous SNV 0.828 4 25 hm5C_associated_SNPs_74331 0 0 1 0 2 ASPSCR1 chr17:79968744 5'GT 79968744 Upstream 7bp
chr5 1219124 1219124 1 + T C UCEC 1219123 + 1219103 1219143 41 TCTTCATTATGCTCTTCTGCCTGGGGCTGTCATCTATGTTT TCTTCATTATGCTCTTCTGCCCGGGGCTGTCATCTATGTTT < 41bp 0.764927036883601 0.53387268464927 0.45486948 0.83725095 prediction 0.462108704468662 Functional Loss - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1219123 chr5:1219124 nonsynonymous SNV 0.954 4 22 hm5C_associated_SNPs_74332 0 0 0 0 1 SLC6A19 chr5:1219222 5'GT 1219222 Upstream 99bp
chr2 27156166 27156166 1 + C T LIHC 27156164 + 27156144 27156184 41 CTGGTCAACGTGTCCAGTATCTCGGCTGGTGACGTTATCGC CTGGTCAACGTGTCCAGTATCTTGGCTGGTGACGTTATCGC < 41bp 0.731047533258397 0.433140675752872 0.47808117 0.53844833 prediction 0.462095066516793 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27156164 chr2:27156166 nonsynonymous SNV 0.988 3 23 hm5C_associated_SNPs_74336 0 0 0 0 2 DPYSL5 chr2:27156126 3'AG 27156126 Downstream 41bp
chr2 27156166 27156166 1 + C T LIHC 27156164 + 27156144 27156184 41 CTGGTCAACGTGTCCAGTATCTCGGCTGGTGACGTTATCGC CTGGTCAACGTGTCCAGTATCTTGGCTGGTGACGTTATCGC < 41bp 0.731047533258397 0.433140675752872 0.47808117 0.53844833 prediction 0.462095066516793 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27156164 chr2:27156166 nonsynonymous SNV 0.988 3 23 hm5C_associated_SNPs_74336 0 0 0 0 2 DPYSL5 chr2:27156201 5'GT 27156201 Upstream 36bp
chr12 80982205 80982205 1 + G T ESCA 80982203 + 80982183 80982223 41 GGCTATGGCAATGCTTCAAACTGGATTTCTACAAAAACTCT GGCTATGGCAATGCTTCAAACTTGATTTCTACAAAAACTCT < 41bp 0.731045331533946 0.409297518283506 0.07868406 0.02376327 prediction 0.462090663067892 Functional Loss - PTPRQ ENSG00000139304 CDS Human protein_coding chr12:80982203 chr12:80982205 nonsynonymous SNV 0.821 2 23 hm5C_associated_SNPs_74339 0 0 0 0 1 PTPRQ chr12:80982231 5'GT 80982231 Upstream 27bp
chr22 21922044 21922044 1 + G T LIHC 21922042 + 21922022 21922062 41 ACCAAATCCAAGATGGCGGCCAGCAGGAGGCTGATGAAGGT ACCAAATCCAAGATGGCGGCCATCAGGAGGCTGATGAAGGT < 41bp 0.731045177624097 0.392976191935342 0.41381016 0.38645673 prediction 0.462090355248195 Functional Loss - UBE2L3 ENSG00000185651 CDS Human protein_coding chr22:21922042 chr22:21922044 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_74340 0 0 1 0 1 UBE2L3 chr22:21922060 5'GT 21922060 Upstream 17bp
chr14 59789695 59789695 1 + C T UCEC 59789693 + 59789673 59789713 41 GGACTACGAGACCTCAGAGTCTCGAATACATACTTCTCTCA GGACTACGAGACCTCAGAGTCTTGAATACATACTTCTCTCA < 41bp 0.731041934430189 0.427205892841707 0.5797049 0.07150528 prediction 0.462083868860377 Functional Loss - DAAM1 ENSG00000100592 CDS Human protein_coding chr14:59789693 chr14:59789695 stopgain 0.999 1 23 hm5C_associated_SNPs_74342 0 0 1 0 1 DAAM1 chr14:59789610 3'AG 59789610 Downstream 86bp
chr9 133577570 133577570 1 + A T LUAD 133577566 + 133577546 133577586 41 TTTCCCCCTCCCTGGTGAAACGGCAGAAGACCCACTTTCAT TTTCCCCCTCCCTGGTGAAACGGCTGAAGACCCACTTTCAT < 41bp 0.88765771316626 0.656619299067063 0.41924104 0.38568127 prediction 0.462076828198394 Functional Loss - EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133577566 chr9:133577570 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_74343 0 0 1 0 2 EXOSC2 chr9:133577521 3'AG 133577521 Downstream 50bp
chr9 133577570 133577570 1 + A T LUAD 133577566 + 133577546 133577586 41 TTTCCCCCTCCCTGGTGAAACGGCAGAAGACCCACTTTCAT TTTCCCCCTCCCTGGTGAAACGGCTGAAGACCCACTTTCAT < 41bp 0.88765771316626 0.656619299067063 0.41924104 0.38568127 prediction 0.462076828198394 Functional Loss - EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133577566 chr9:133577570 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_74343 0 0 1 0 2 EXOSC2 chr9:133577530 3'AG 133577530 Downstream 41bp
chr10 31608200 31608200 1 + G T LUAD 31608197 + 31608177 31608217 41 CCAGGTGTAAGCGCAGAAAGCAGGCGAACCCGCGGCGCAAT CCAGGTGTAAGCGCAGAAAGCAGTCGAACCCGCGGCGCAAT < 41bp 0.731037772634127 0.385225147262653 0.9140975 0.79575926 prediction 0.462075545268255 Functional Loss - ZEB1 ENSG00000148516 CDS Human protein_coding chr10:31608197 chr10:31608200 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_74344 0 0 0 0 1 ZEB1 chr10:31608221 5'GT 31608221 Upstream 22bp
chr14 63747827 63747827 1 + G A READ 63747824 + 63747804 63747844 41 AGCTCAAGGACTGCATGCCTCACGTGCCTTATGTCCTCATA AGCTCAAGGACTGCATGCCTCACATGCCTTATGTCCTCATA < 41bp 0.754033205879259 0.522997112986861 0.050211787 0.014400691 prediction 0.462072185784797 Functional Loss - RHOJ ENSG00000126785 CDS Human protein_coding chr14:63747824 chr14:63747827 nonsynonymous SNV 0.977 2 24 hm5C_associated_SNPs_74346 0 0 0 0 1 RHOJ chr14:63747853 5'GT 63747853 Upstream 27bp
chr11 112064241 112064241 1 + G T UCEC 112064239 + 112064219 112064259 41 ATGGCGCTGCTTCACCAGTTCAGAATGGCAAAGGGCACAGT ATGGCGCTGCTTCACCAGTTCATAATGGCAAAGGGCACAGT < 41bp 0.731033831162971 0.383782728852648 0.13008952 0.10537276 prediction 0.462067662325943 Functional Loss - BCO2 ENSG00000197580;ENSG00000272790 CDS Human other chr11:112064239 chr11:112064241 stopgain 0.984 1 23 hm5C_associated_SNPs_74348 0 0 0 0 1 BCO2 chr11:112064197 3'AG 112064197 Downstream 45bp
chr5 1036434 1036434 1 + C T UCEC 1036432 + 1036412 1036452 41 CCCTACTGCGTGGACGAGAACACGGAGCGCAGAAACCACTA CCCTACTGCGTGGACGAGAACATGGAGCGCAGAAACCACTA < 41bp 0.80343791641613 0.572406018549116 0.8196712 0.5705356 prediction 0.462063795734027 Functional Loss - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036432 chr5:1036434 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_74349 0 0 0 0 2 NKD2 chr5:1036372 3'AG 1036372 Downstream 63bp
chr5 1036434 1036434 1 + C T UCEC 1036432 + 1036412 1036452 41 CCCTACTGCGTGGACGAGAACACGGAGCGCAGAAACCACTA CCCTACTGCGTGGACGAGAACATGGAGCGCAGAAACCACTA < 41bp 0.80343791641613 0.572406018549116 0.8196712 0.5705356 prediction 0.462063795734027 Functional Loss - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036432 chr5:1036434 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_74349 0 0 0 0 2 NKD2 chr5:1036499 5'GT 1036499 Upstream 66bp
chr5 141309176 141309176 1 + G A rs201802656 141309173 + 141309153 141309193 41 GACAACACATCCTCCCCAGCCCCGATGGCCCAGCTCCCAGG GACAACACATCCTCCCCAGCCCCAATGGCCCAGCTCCCAGG < 41bp 0.785018331779112 0.553989715331691 0.06420401 0.21116146 prediction 0.462057232894842 Functional Loss - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141309173 chr5:141309176 nonsynonymous SNV 0.031 0 24 hm5C_associated_SNPs_74351 0 0 1 0 1 KIAA0141 chr5:141309147 3'AG 141309147 Downstream 30bp
chr3 197483348 197483348 1 + G T UCEC 197483345 + 197483325 197483365 41 AGGGAAGAAGCAGAATTTTCCAAGACTAAATAGAAGACTCC AGGGAAGAAGCAGAATTTTCCAATACTAAATAGAAGACTCC < 41bp 0.731026095885656 0.45716038032433 0.25309885 0.061369717 prediction 0.462052191771311 Functional Loss - FYTTD1 ENSG00000122068 CDS Human protein_coding chr3:197483345 chr3:197483348 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_74353 0 0 1 1 2 FYTTD1 chr3:197483297 3'AG 197483297 Downstream 52bp
chr3 197483348 197483348 1 + G T UCEC 197483345 + 197483325 197483365 41 AGGGAAGAAGCAGAATTTTCCAAGACTAAATAGAAGACTCC AGGGAAGAAGCAGAATTTTCCAATACTAAATAGAAGACTCC < 41bp 0.731026095885656 0.45716038032433 0.25309885 0.061369717 prediction 0.462052191771311 Functional Loss - FYTTD1 ENSG00000122068 CDS Human protein_coding chr3:197483345 chr3:197483348 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_74353 0 0 1 1 2 FYTTD1 chr3:197483428 5'GT 197483428 Upstream 81bp
chr1 43621891 43621891 1 + C T THYM 43621889 + 43621869 43621909 41 CTTTCTAGATCAACCCAGAACGCCATGACCGCAGGCTGAAT CTTTCTAGATCAACCCAGAACGTCATGACCGCAGGCTGAAT < 41bp 0.819402224294266 0.588376494913488 0.38509828 0.1176998 prediction 0.462051458761556 Functional Loss - FAM183A ENSG00000186973 CDS Human protein_coding chr1:43621889 chr1:43621891 synonymous SNV . 0 23 hm5C_associated_SNPs_74354 0 0 0 0 1 FAM183A chr1:43621877 3'AG 43621877 Downstream 15bp
chr11 118947771 118947771 1 + C T rs114313869 118947769 + 118947749 118947789 41 TATACCAAGCTCAAGGACAGCTCGAAGCTGGAGGAGTTCAT TATACCAAGCTCAAGGACAGCTTGAAGCTGGAGGAGTTCAT < 41bp 0.731025077968855 0.443039868133336 0.117402315 0.0840528 prediction 0.46205015593771 Functional Loss - VPS11 ENSG00000160695 CDS Human protein_coding chr11:118947769 chr11:118947771 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_74355 0 0 1 0 1 VPS11 chr11:118947793 5'GT 118947793 Upstream 23bp
chr2 130940331 130940331 1 + G A rs375693364 130940328 + 130940308 130940348 41 GGCCGTGTCTCTGCCCACGTCGAGCGTGCCCGAGACCCGAG GGCCGTGTCTCTGCCCACGTCGAACGTGCCCGAGACCCGAG < 41bp 0.765453724682584 0.534429474868499 0.7641865 0.29350114 prediction 0.462048499628171 Functional Loss - MZT2B ENSG00000152082 CDS Human protein_coding chr2:130940328 chr2:130940331 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_74356 0 0 1 0 1 MZT2B chr2:130940348 5'GT 130940348 Upstream 18bp
chr16 84442070 84442070 1 + G A SKCM 84442067 + 84442047 84442087 41 GCCCTGGTGAGTGTCCTCACCAAGGAGTATGAGGACGCCGT GCCCTGGTGAGTGTCCTCACCAAAGAGTATGAGGACGCCGT < 41bp 0.7678459510885 0.536822270717189 0.45536226 0.1379672 prediction 0.462047360742623 Functional Loss - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84442067 chr16:84442070 synonymous SNV . 0 24 hm5C_associated_SNPs_74357 0 0 0 0 2 ATP2C2 chr16:84442011 3'AG 84442011 Downstream 60bp
chr16 84442070 84442070 1 + G A SKCM 84442067 + 84442047 84442087 41 GCCCTGGTGAGTGTCCTCACCAAGGAGTATGAGGACGCCGT GCCCTGGTGAGTGTCCTCACCAAAGAGTATGAGGACGCCGT < 41bp 0.7678459510885 0.536822270717189 0.45536226 0.1379672 prediction 0.462047360742623 Functional Loss - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84442067 chr16:84442070 synonymous SNV . 0 24 hm5C_associated_SNPs_74357 0 0 0 0 2 ATP2C2 chr16:84442100 5'GT 84442100 Upstream 31bp
chr4 166385732 166385732 1 + G C LUSC 166385728 + 166385708 166385748 41 CCCAGATGGCTTTGAGAAGGCAGCGTCTCAGGTGAGTGCCA CCCAGATGGCTTTGAGAAGGCAGCCTCTCAGGTGAGTGCCA < 41bp 0.731013072323847 0.441521657795203 0.079679966 0.06262785 prediction 0.462026144647694 Functional Loss - CPE ENSG00000109472 CDS Human protein_coding chr4:166385728 chr4:166385732 synonymous SNV . 0 25 hm5C_associated_SNPs_74361 0 0 1 0 1 CPE chr4:166385738 5'GT 166385738 Upstream 7bp
chr2 233498669 233498669 1 + G T rs2276557 233498667 + 233498647 233498687 41 TCAACCCCTACACGGAGTTCCCGGAGTTCAGCCGCCGCCTC TCAACCCCTACACGGAGTTCCCTGAGTTCAGCCGCCGCCTC < 41bp 0.902210488311834 0.671198731624178 0.9311391 0.5999372 prediction 0.462023513375311 Functional Loss - EFHD1 ENSG00000115468 CDS Human protein_coding chr2:233498667 chr2:233498669 stopgain . 0 23 hm5C_associated_SNPs_74362 0 0 0 0 1 EFHD1 chr2:233498716 5'GT 233498716 Upstream 48bp
chr2 242274603 242274603 1 + G T UCEC 242274601 + 242274581 242274621 41 ATTCCTAACTGATCTGTACCCAGAAAGAGTCATACCTGGAG ATTCCTAACTGATCTGTACCCATAAAGAGTCATACCTGGAG < 41bp 0.731011564260326 0.393501895122162 0.8868412 0.33256692 prediction 0.462023128520652 Functional Loss - SEPT2 ENSG00000168385 CDS Human protein_coding chr2:242274601 chr2:242274603 stopgain 1.000 1 23 hm5C_associated_SNPs_74363 0 0 1 0 2 SEPT2 chr2:242274541 3'AG 242274541 Downstream 63bp
chr2 242274603 242274603 1 + G T UCEC 242274601 + 242274581 242274621 41 ATTCCTAACTGATCTGTACCCAGAAAGAGTCATACCTGGAG ATTCCTAACTGATCTGTACCCATAAAGAGTCATACCTGGAG < 41bp 0.731011564260326 0.393501895122162 0.8868412 0.33256692 prediction 0.462023128520652 Functional Loss - SEPT2 ENSG00000168385 CDS Human protein_coding chr2:242274601 chr2:242274603 stopgain 1.000 1 23 hm5C_associated_SNPs_74363 0 0 1 0 2 SEPT2 chr2:242274627 5'GT 242274627 Upstream 25bp
chr3 155655428 155655428 1 + C T SKCM 155655426 + 155655406 155655446 41 TAAGAAGATTCCTGGTATTTCTCGAATTATGTATGACTTAA TAAGAAGATTCCTGGTATTTCTTGAATTATGTATGACTTAA < 41bp 0.845379204959114 0.614369233733827 0.8861207 0.085641235 prediction 0.462019942450573 Functional Loss - GMPS ENSG00000163655 CDS Human protein_coding chr3:155655426 chr3:155655428 stopgain 1.000 1 23 hm5C_associated_SNPs_74365 0 0 0 0 1 GMPS chr3:155655380 3'AG 155655380 Downstream 49bp
chr1 17557135 17557135 1 + G A SKCM 17557132 + 17557112 17557152 41 CCCGTGGTCTTTGACTCCCCCAGGAACAGGGGCCTGAAAGA CCCGTGGTCTTTGACTCCCCCAGAAACAGGGGCCTGAAAGA < 41bp 0.785168055152332 0.55416261454604 0.30307162 0.053849816 prediction 0.462010881212585 Functional Loss - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17557132 chr1:17557135 synonymous SNV . 0 24 hm5C_associated_SNPs_74366 0 0 0 0 2 PADI1 chr1:17557067 3'AG 17557067 Downstream 69bp
chr1 17557135 17557135 1 + G A SKCM 17557132 + 17557112 17557152 41 CCCGTGGTCTTTGACTCCCCCAGGAACAGGGGCCTGAAAGA CCCGTGGTCTTTGACTCCCCCAGAAACAGGGGCCTGAAAGA < 41bp 0.785168055152332 0.55416261454604 0.30307162 0.053849816 prediction 0.462010881212585 Functional Loss - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17557132 chr1:17557135 synonymous SNV . 0 24 hm5C_associated_SNPs_74366 0 0 0 0 2 PADI1 chr1:17557174 5'GT 17557174 Upstream 40bp
chr17 42255578 42255578 1 + C T UCEC 42255576 + 42255556 42255596 41 TTTCACTCCTGGCCTAGGAGCACGAAGCCTTCTACAGCTCG TTTCACTCCTGGCCTAGGAGCATGAAGCCTTCTACAGCTCG < 41bp 0.731001060166598 0.470955602571532 0.21079463 0.34127885 prediction 0.462002120333197 Functional Loss - ASB16 ENSG00000161664 CDS Human protein_coding chr17:42255576 chr17:42255578 synonymous SNV . 0 23 hm5C_associated_SNPs_74368 0 0 0 0 1 ASB16 chr17:42255573 3'AG 42255573 Downstream 6bp
chr17 42255579 42255579 1 + G A UCS 42255576 + 42255556 42255596 41 TTTCACTCCTGGCCTAGGAGCACGAAGCCTTCTACAGCTCG TTTCACTCCTGGCCTAGGAGCACAAAGCCTTCTACAGCTCG < 41bp 0.731001060166598 0.490678492487903 0.21079463 0.07505262 prediction 0.462002120333197 Functional Loss - ASB16 ENSG00000161664 CDS Human protein_coding chr17:42255576 chr17:42255579 nonsynonymous SNV 0.927 0 24 hm5C_associated_SNPs_74369 0 0 0 0 1 ASB16 chr17:42255573 3'AG 42255573 Downstream 7bp
chr1 32625048 32625048 1 + G T COAD 32625046 + 32625026 32625066 41 ATATTGCCTCTGGAACCTCTCAGCAGACCAAAATTGTCATT ATATTGCCTCTGGAACCTCTCATCAGACCAAAATTGTCATT < 41bp 0.730999437953057 0.386962605666946 0.85438585 0.25690138 prediction 0.461998875906114 Functional Loss - KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32625046 chr1:32625048 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_74370 0 0 1 0 2 KPNA6 chr1:32625001 3'AG 32625001 Downstream 48bp
chr1 32625048 32625048 1 + G T COAD 32625046 + 32625026 32625066 41 ATATTGCCTCTGGAACCTCTCAGCAGACCAAAATTGTCATT ATATTGCCTCTGGAACCTCTCATCAGACCAAAATTGTCATT < 41bp 0.730999437953057 0.386962605666946 0.85438585 0.25690138 prediction 0.461998875906114 Functional Loss - KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32625046 chr1:32625048 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_74370 0 0 1 0 2 KPNA6 chr1:32625132 5'GT 32625132 Upstream 85bp
chr22 41924576 41924576 1 + G A UCEC 41924573 + 41924553 41924593 41 AGACGCAGATTGAGTGGTTCCGCGCTGGCAGTGCCCTCAAC AGACGCAGATTGAGTGGTTCCGCACTGGCAGTGCCCTCAAC < 41bp 0.751568716932348 0.520576361417011 0.09452647 0.046019375 prediction 0.461984711030674 Functional Loss - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41924573 chr22:41924576 nonsynonymous SNV 0.966 3 24 hm5C_associated_SNPs_74374 0 0 1 0 1 ACO2 chr22:41924483 3'AG 41924483 Downstream 94bp
chr1 9662277 9662277 1 + G A rs369146558 9662274 + 9662254 9662294 41 TTGTGCTGCCTGGTTGGCTTCACGGCGGCTGTGGCCACAAG TTGTGCTGCCTGGTTGGCTTCACAGCGGCTGTGGCCACAAG < 41bp 0.730992174583724 0.494676897445157 0.40475753 0.30183524 prediction 0.461984349167448 Functional Loss - TMEM201 ENSG00000188807 CDS Human protein_coding chr1:9662274 chr1:9662277 synonymous SNV . 0 24 hm5C_associated_SNPs_74375 0 0 1 0 1 TMEM201 chr1:9662330 5'GT 9662330 Upstream 54bp
chr20 56138162 56138162 1 + C T SKCM 56138160 + 56138140 56138180 41 CCTGACCGCAGAGAGATCATCTCCTTTGGCAGTGGGTACGG CCTGACCGCAGAGAGATCATCTTCTTTGGCAGTGGGTACGG < 41bp 0.730991678152423 0.436148428397315 0.17074955 0.06247735 prediction 0.461983356304846 Functional Loss - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56138160 chr20:56138162 nonsynonymous SNV 0.966 4 23 hm5C_associated_SNPs_74376 0 0 1 0 1 PCK1 chr20:56138084 3'AG 56138084 Downstream 79bp
chr3 44283827 44283827 1 + G A UCEC 44283824 + 44283804 44283844 41 GGCCCGGTGAGCCCGTCAGACTCGTCAGACCCGCGAGGCCT GGCCCGGTGAGCCCGTCAGACTCATCAGACCCGCGAGGCCT < 41bp 0.768876685645575 0.537887938356648 0.3714882 0.21327966 prediction 0.461977494577855 Functional Loss - TOPAZ1 ENSG00000173769 CDS Human protein_coding chr3:44283824 chr3:44283827 synonymous SNV . 0 24 hm5C_associated_SNPs_74379 0 0 0 0 1 TOPAZ1 chr3:44283891 5'GT 44283891 Upstream 65bp
chr10 101147693 101147693 1 + G A SKCM 101147690 + 101147670 101147710 41 TCCACTAAGGCCCCCACAACCCGGGGCACACCCCAGACCCC TCCACTAAGGCCCCCACAACCCGAGGCACACCCCAGACCCC < 41bp 0.782707688899079 0.551722932624473 0.9298628 0.9111053 prediction 0.461969512549212 Functional Loss - CNNM1 ENSG00000119946 CDS Human protein_coding chr10:101147690 chr10:101147693 synonymous SNV . 0 24 hm5C_associated_SNPs_74382 0 0 0 0 1 CNNM1 chr10:101147760 5'GT 101147760 Upstream 68bp
chr19 45504894 45504894 1 + G C rs558593933 45504893 + 45504873 45504913 41 CCCCACTGGCCGGGCCATGCCGAGTCGCCGCGTCGCCAGAC CCCCACTGGCCGGGCCATGCCCAGTCGCCGCGTCGCCAGAC < 41bp 0.869924950521703 0.638943659421125 0.22477043 0.025617063 prediction 0.461962582201157 Functional Loss - RELB ENSG00000104856 CDS Human protein_coding chr19:45504893 chr19:45504894 synonymous SNV . 0 22 hm5C_associated_SNPs_74383 0 0 0 0 1 RELB chr19:45504943 5'GT 45504943 Upstream 50bp
chr19 48832637 48832637 1 + G A rs535964111 48832634 + 48832614 48832654 41 CTGAAGGCGGTGCAGGTCCTCATGGTGCTCTCCCTCATTCT CTGAAGGCGGTGCAGGTCCTCATAGTGCTCTCCCTCATTCT < 41bp 0.777127273292305 0.546148221224668 0.26043332 0.31639326 prediction 0.461958104135275 Functional Loss - EMP3 ENSG00000142227 CDS Human protein_coding chr19:48832634 chr19:48832637 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_74384 0 0 1 0 1 EMP3 chr19:48832609 3'AG 48832609 Downstream 29bp
chr16 29814250 29814250 1 + G A BLCA 29814247 + 29814227 29814267 41 AGACAGTGGAAGAGAAGGACCTAGAGATTGAGGTACGTGTT AGACAGTGGAAGAGAAGGACCTAAAGATTGAGGTACGTGTT < 41bp 0.747914834366927 0.516941835359114 0.056971252 0.020199507 prediction 0.461945998015626 Functional Loss - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29814247 chr16:29814250 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_74386 0 0 1 0 1 KIF22 chr16:29814258 5'GT 29814258 Upstream 9bp
chr13 25272826 25272826 1 + G A rs61740542 25272823 + 25272803 25272843 41 TCCACGAGATGGATGACCCCCACGGCAAGCGCTTCCTCATG TCCACGAGATGGATGACCCCCACAGCAAGCGCTTCCTCATG < 41bp 0.783968456626581 0.553001655025642 0.075910926 0.16348189 prediction 0.461933603201879 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25272823 chr13:25272826 nonsynonymous SNV 0.161 0 24 hm5C_associated_SNPs_74388 0 0 0 0 1 ATP12A chr13:25272796 3'AG 25272796 Downstream 31bp
chr5 137426675 137426675 1 + G A STAD 137426672 + 137426652 137426692 41 TTCCAGTGGTGCTGTACGGTCAAGTGTGACCAGTGTAGGCA TTCCAGTGGTGCTGTACGGTCAAATGTGACCAGTGTAGGCA < 41bp 0.774582606920191 0.543620117028763 0.8210411 0.417291 prediction 0.461924979782856 Functional Loss - WNT8A ENSG00000061492 CDS Human protein_coding chr5:137426672 chr5:137426675 synonymous SNV . 0 24 hm5C_associated_SNPs_74390 0 0 0 0 1 WNT8A chr5:137426696 5'GT 137426696 Upstream 22bp
chr12 7069309 7069309 1 + G A rs200112594 7069306 + 7069286 7069326 41 CAGATGGTGCGGGCGCAGCGCTCGGGCATGGTGCAGACGGA CAGATGGTGCGGGCGCAGCGCTCAGGCATGGTGCAGACGGA < 41bp 0.752980643617584 0.522018929318315 0.09334323 0.058638066 prediction 0.461923428598537 Functional Loss - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7069306 chr12:7069309 synonymous SNV . 0 24 hm5C_associated_SNPs_74391 0 0 0 0 2 PTPN6 chr12:7069251 3'AG 7069251 Downstream 59bp
chr12 7069309 7069309 1 + G A rs200112594 7069306 + 7069286 7069326 41 CAGATGGTGCGGGCGCAGCGCTCGGGCATGGTGCAGACGGA CAGATGGTGCGGGCGCAGCGCTCAGGCATGGTGCAGACGGA < 41bp 0.752980643617584 0.522018929318315 0.09334323 0.058638066 prediction 0.461923428598537 Functional Loss - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7069306 chr12:7069309 synonymous SNV . 0 24 hm5C_associated_SNPs_74391 0 0 0 0 2 PTPN6 chr12:7069402 5'GT 7069402 Upstream 94bp
chrX 72674300 72674300 1 + C T BRCA 72674298 + 72674278 72674318 41 CAGTTTGAGAATAGTGGAGGCTCGGTGCAAAGTGACTCTGA CAGTTTGAGAATAGTGGAGGCTTGGTGCAAAGTGACTCTGA < 41bp 0.730950817427613 0.46361167686507 0.19892454 0.17208317 prediction 0.461901634855227 Functional Loss - CDX4 ENSG00000131264 CDS Human protein_coding chrX:72674298 chrX:72674300 nonsynonymous SNV 0.898 2 23 hm5C_associated_SNPs_74393 0 0 0 0 1 CDX4 chrX:72674215 3'AG 72674215 Downstream 86bp
chr1 209781271 209781271 1 + T C BLCA 209781270 + 209781250 209781290 41 TGGTCCATCGGCGTCATCACCTACATATTGTGAGTAGACGC TGGTCCATCGGCGTCATCACCCACATATTGTGAGTAGACGC < 41bp 0.730943162490777 0.461995987151339 0.6459971 0.03123796 prediction 0.461886324981555 Functional Loss - CAMK1G ENSG00000008118 CDS Human protein_coding chr1:209781270 chr1:209781271 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_74394 0 0 0 0 2 CAMK1G chr1:209781203 3'AG 209781203 Downstream 69bp
chr1 209781271 209781271 1 + T C BLCA 209781270 + 209781250 209781290 41 TGGTCCATCGGCGTCATCACCTACATATTGTGAGTAGACGC TGGTCCATCGGCGTCATCACCCACATATTGTGAGTAGACGC < 41bp 0.730943162490777 0.461995987151339 0.6459971 0.03123796 prediction 0.461886324981555 Functional Loss - CAMK1G ENSG00000008118 CDS Human protein_coding chr1:209781270 chr1:209781271 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_74394 0 0 0 0 2 CAMK1G chr1:209781278 5'GT 209781278 Upstream 8bp
chr2 29404515 29404515 1 + A C UCEC 29404511 + 29404491 29404531 41 TTGAAGGGAGCGTGAAGCTGCACGAGGGGTCTCAGGTCCTG TTGAAGGGAGCGTGAAGCTGCACGCGGGGTCTCAGGTCCTG < 41bp 0.926041227246332 0.695098729996297 0.29984015 0.14132771 prediction 0.46188499450007 Functional Loss - CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29404511 chr2:29404515 nonsynonymous SNV 0.985 0 25 hm5C_associated_SNPs_74395 0 0 0 0 1 CLIP4 chr2:29404438 3'AG 29404438 Downstream 78bp
chrX 153556248 153556248 1 + C T UCEC 153556246 + 153556226 153556266 41 CTGGATGTCGCCACCATCGTCTCCAGTGCAAAAGCCACAGA CTGGATGTCGCCACCATCGTCTTCAGTGCAAAAGCCACAGA < 41bp 0.85608406740903 0.625142044289009 0.9210979 0.2432766 prediction 0.461884046240041 Functional Loss - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153556246 chrX:153556248 nonsynonymous SNV 0.916 2 23 hm5C_associated_SNPs_74396 0 0 0 0 2 TKTL1 chrX:153556185 3'AG 153556185 Downstream 64bp
chrX 153556248 153556248 1 + C T UCEC 153556246 + 153556226 153556266 41 CTGGATGTCGCCACCATCGTCTCCAGTGCAAAAGCCACAGA CTGGATGTCGCCACCATCGTCTTCAGTGCAAAAGCCACAGA < 41bp 0.85608406740903 0.625142044289009 0.9210979 0.2432766 prediction 0.461884046240041 Functional Loss - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153556246 chrX:153556248 nonsynonymous SNV 0.916 2 23 hm5C_associated_SNPs_74396 0 0 0 0 2 TKTL1 chrX:153556304 5'GT 153556304 Upstream 57bp
chr5 138266342 138266342 1 + C T KIRP 138266340 + 138266320 138266360 41 GATGGAGATGACAGACTTTACCCGGTGAGCAGCACCCCGGC GATGGAGATGACAGACTTTACCTGGTGAGCAGCACCCCGGC < 41bp 0.813590725337006 0.582651586606299 0.9062781 0.8974971 prediction 0.461878277461414 Functional Loss - CTNNA1 ENSG00000044115 CDS Human protein_coding chr5:138266340 chr5:138266342 stopgain 0.979 1 23 hm5C_associated_SNPs_74397 0 0 1 0 1 CTNNA1 chr5:138266343 5'GT 138266343 Upstream 2bp
chr19 6848063 6848063 1 + G A rs138664261 6848060 + 6848040 6848080 41 GAGAGCATCCTGGCCAACCGCTCGGACGGGACTTTCTTGGT GAGAGCATCCTGGCCAACCGCTCAGACGGGACTTTCTTGGT < 41bp 0.7731235620972 0.54218643247556 0.35810903 0.2122764 prediction 0.461874259243279 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6848060 chr19:6848063 synonymous SNV . 0 24 hm5C_associated_SNPs_74398 0 0 0 0 2 VAV1 chr19:6848009 3'AG 6848009 Downstream 55bp
chr19 6848063 6848063 1 + G A rs138664261 6848060 + 6848040 6848080 41 GAGAGCATCCTGGCCAACCGCTCGGACGGGACTTTCTTGGT GAGAGCATCCTGGCCAACCGCTCAGACGGGACTTTCTTGGT < 41bp 0.7731235620972 0.54218643247556 0.35810903 0.2122764 prediction 0.461874259243279 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6848060 chr19:6848063 synonymous SNV . 0 24 hm5C_associated_SNPs_74398 0 0 0 0 2 VAV1 chr19:6848125 5'GT 6848125 Upstream 63bp
chr19 54652195 54652195 1 + A C COAD 54652191 + 54652171 54652211 41 CCTAGCGGAGGCGGAGGCGGCGGCAGCGGAGGTGGAGGGAG CCTAGCGGAGGCGGAGGCGGCGGCCGCGGAGGTGGAGGGAG < 41bp 0.927591262647844 0.696658426363239 0.9156834 0.9136679 prediction 0.46186567256921 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54652191 chr19:54652195 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_74401 0 0 1 0 1 CNOT3 chr19:54652270 5'GT 54652270 Upstream 76bp
chr17 29261232 29261232 1 + G A LUSC 29261229 + 29261209 29261249 41 GAGAAGGATTCCTGTGGAAGCGAGGAAGGGACAACTCACAG GAGAAGGATTCCTGTGGAAGCGAAGAAGGGACAACTCACAG < 41bp 0.743135013863244 0.512202179859828 0.46741933 0.18395603 prediction 0.461865668006832 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29261229 chr17:29261232 nonsynonymous SNV 0.906 4 24 hm5C_associated_SNPs_74402 0 0 0 0 2 ADAP2 chr17:29261203 3'AG 29261203 Downstream 30bp
chr17 29261232 29261232 1 + G A LUSC 29261229 + 29261209 29261249 41 GAGAAGGATTCCTGTGGAAGCGAGGAAGGGACAACTCACAG GAGAAGGATTCCTGTGGAAGCGAAGAAGGGACAACTCACAG < 41bp 0.743135013863244 0.512202179859828 0.46741933 0.18395603 prediction 0.461865668006832 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29261229 chr17:29261232 nonsynonymous SNV 0.906 4 24 hm5C_associated_SNPs_74402 0 0 0 0 2 ADAP2 chr17:29261315 5'GT 29261315 Upstream 84bp
chr5 131728177 131728177 1 + G A UCEC 131728174 + 131728154 131728194 41 ATGGTGGGCAAGTTTGGAGTCACGGCTGCCTTTTCCATGGT ATGGTGGGCAAGTTTGGAGTCACAGCTGCCTTTTCCATGGT < 41bp 0.771887099069488 0.540954344011725 0.2867837 0.22964132 prediction 0.461865510115526 Functional Loss - SLC22A5 ENSG00000197375 CDS Human protein_coding chr5:131728174 chr5:131728177 synonymous SNV . 0 24 hm5C_associated_SNPs_74403 0 0 0 0 1 SLC22A5 chr5:131728125 3'AG 131728125 Downstream 53bp
chr4 86491782 86491782 1 + G T STAD 86491779 + 86491759 86491799 41 AGTGTGGGTGGCTGAGGAAGCAAGGAGGCTTTGTCAAGACT AGTGTGGGTGGCTGAGGAAGCAATGAGGCTTTGTCAAGACT < 41bp 0.730932401633856 0.367668696424586 0.38452068 0.06857377 prediction 0.461864803267712 Functional Loss - ARHGAP24 ENSG00000138639 CDS Human protein_coding chr4:86491779 chr4:86491782 stopgain 1.000 1 24 hm5C_associated_SNPs_74404 0 0 1 0 1 ARHGAP24 chr4:86491874 5'GT 86491874 Upstream 93bp
chr20 61468563 61468563 1 + G A HNSC 61468560 + 61468540 61468580 41 CCATTGGTCACCCTGGCGCTCGAGGACCCCCTGGATACCGC CCATTGGTCACCCTGGCGCTCGAAGACCCCCTGGATACCGC < 41bp 0.744156530492095 0.513229033963068 0.9137653 0.74761176 prediction 0.461854993058054 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61468560 chr20:61468563 nonsynonymous SNV 0.500 4 24 hm5C_associated_SNPs_74406 0 0 1 0 1 COL9A3 chr20:61468617 5'GT 61468617 Upstream 55bp
chr5 131719911 131719911 1 + G A COAD 131719908 + 131719888 131719928 41 TTCAGCTTCCTGCAGATCTTCTCGAAGAATTTTGAGATGTT TTCAGCTTCCTGCAGATCTTCTCAAAGAATTTTGAGATGTT < 41bp 0.730925878760667 0.492256377249254 0.89837384 0.4699948 prediction 0.461851757521335 Functional Loss - SLC22A5 ENSG00000197375 CDS Human protein_coding chr5:131719908 chr5:131719911 synonymous SNV . 0 24 hm5C_associated_SNPs_74407 0 0 1 0 2 SLC22A5 chr5:131719839 3'AG 131719839 Downstream 73bp
chr5 131719911 131719911 1 + G A COAD 131719908 + 131719888 131719928 41 TTCAGCTTCCTGCAGATCTTCTCGAAGAATTTTGAGATGTT TTCAGCTTCCTGCAGATCTTCTCAAAGAATTTTGAGATGTT < 41bp 0.730925878760667 0.492256377249254 0.89837384 0.4699948 prediction 0.461851757521335 Functional Loss - SLC22A5 ENSG00000197375 CDS Human protein_coding chr5:131719908 chr5:131719911 synonymous SNV . 0 24 hm5C_associated_SNPs_74407 0 0 1 0 2 SLC22A5 chr5:131719993 5'GT 131719993 Upstream 83bp
chr7 116538860 116538860 1 + C T OV 116538858 + 116538838 116538878 41 GTATAACTTGGACCAGTTTACTCCAGTAAAAATTGAAGGTT GTATAACTTGGACCAGTTTACTTCAGTAAAAATTGAAGGTT < 41bp 0.856384783557321 0.625465203200446 0.90825766 0.15827352 prediction 0.461839160713749 Functional Loss - CAPZA2 ENSG00000198898 CDS Human protein_coding chr7:116538858 chr7:116538860 nonsynonymous SNV 0.984 2 23 hm5C_associated_SNPs_74411 0 0 1 2 1 CAPZA2 chr7:116538826 3'AG 116538826 Downstream 35bp
chr19 48259848 48259848 1 + C T GBM 48259846 + 48259826 48259866 41 GAGGAGGAATATGATCGAGCCTCGAGAGAGAGCCAAGTAAG GAGGAGGAATATGATCGAGCCTTGAGAGAGAGCCAAGTAAG < 41bp 0.834901841796626 0.603983914662276 0.39244753 0.11948943 prediction 0.4618358542687 Functional Loss - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259846 chr19:48259848 stopgain 0.912 1 23 hm5C_associated_SNPs_74413 0 0 1 0 2 NOP53 chr19:48259785 3'AG 48259785 Downstream 64bp
chr19 48259848 48259848 1 + C T GBM 48259846 + 48259826 48259866 41 GAGGAGGAATATGATCGAGCCTCGAGAGAGAGCCAAGTAAG GAGGAGGAATATGATCGAGCCTTGAGAGAGAGCCAAGTAAG < 41bp 0.834901841796626 0.603983914662276 0.39244753 0.11948943 prediction 0.4618358542687 Functional Loss - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259846 chr19:48259848 stopgain 0.912 1 23 hm5C_associated_SNPs_74413 0 0 1 0 2 NOP53 chr19:48259861 5'GT 48259861 Upstream 14bp
chr22 27024391 27024391 1 + G T LUSC 27024388 + 27024368 27024408 41 AGGGTCCTTCCACGTCCACTCTGGGGCGTAAGTGTATTCAA AGGGTCCTTCCACGTCCACTCTGTGGCGTAAGTGTATTCAA < 41bp 0.92746819740507 0.696550572208374 0.31027693 0.13987556 prediction 0.461835250393393 Functional Loss - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27024388 chr22:27024391 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_74414 0 0 0 0 1 CRYBA4 chr22:27024394 5'GT 27024394 Upstream 4bp
chrX 18912456 18912456 1 - C T PRAD 18912459 - 18912439 18912479 41 TGCTGAACCGCGTGCCGCAGCCCGAGTACCGGCAGCTGCTG TGCTGAACCGCGTGCCGCAGCCCAAGTACCGGCAGCTGCTG < 41bp 0.730911545088078 0.487672115302342 0.27453047 0.2272701 prediction 0.461823090176156 Functional Loss - PHKA2 ENSG00000044446 CDS Human protein_coding chrX:18912459 chrX:18912456 nonsynonymous SNV 0.964 5 24 hm5C_associated_SNPs_74416 0 0 1 0 1 PHKA2 chrX:18912522 3'AG 18912522 Downstream 67bp
chr12 3120212 3120212 1 + G A THYM 3120209 + 3120189 3120229 41 CCGCTACATCAAGCTCCGGACAGGGAAGACCCGCACCAGGA CCGCTACATCAAGCTCCGGACAGAGAAGACCCGCACCAGGA < 41bp 0.780123357397968 0.549214368970236 0.81653106 0.21770635 prediction 0.461817976855463 Functional Loss - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3120209 chr12:3120212 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_74418 0 0 1 0 2 TEAD4 chr12:3120170 3'AG 3120170 Downstream 43bp
chr12 3120212 3120212 1 + G A THYM 3120209 + 3120189 3120229 41 CCGCTACATCAAGCTCCGGACAGGGAAGACCCGCACCAGGA CCGCTACATCAAGCTCCGGACAGAGAAGACCCGCACCAGGA < 41bp 0.780123357397968 0.549214368970236 0.81653106 0.21770635 prediction 0.461817976855463 Functional Loss - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3120209 chr12:3120212 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_74418 0 0 1 0 2 TEAD4 chr12:3120234 5'GT 3120234 Upstream 23bp
chr17 47230228 47230228 1 + C T UCEC 47230226 + 47230206 47230246 41 TCCCCTTTGGGTACCCAGTCCACGGAGTGGAGGTGATGCCC TCCCCTTTGGGTACCCAGTCCATGGAGTGGAGGTGATGCCC < 41bp 0.821968135915722 0.591063275243514 0.38939232 0.39510703 prediction 0.461809721344417 Functional Loss - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47230226 chr17:47230228 synonymous SNV . 0 23 hm5C_associated_SNPs_74420 0 0 0 0 2 B4GALNT2 chr17:47230162 3'AG 47230162 Downstream 67bp
chr17 47230228 47230228 1 + C T UCEC 47230226 + 47230206 47230246 41 TCCCCTTTGGGTACCCAGTCCACGGAGTGGAGGTGATGCCC TCCCCTTTGGGTACCCAGTCCATGGAGTGGAGGTGATGCCC < 41bp 0.821968135915722 0.591063275243514 0.38939232 0.39510703 prediction 0.461809721344417 Functional Loss - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47230226 chr17:47230228 synonymous SNV . 0 23 hm5C_associated_SNPs_74420 0 0 0 0 2 B4GALNT2 chr17:47230268 5'GT 47230268 Upstream 41bp
chr17 18003719 18003719 1 + C T BLCA 18003717 + 18003697 18003737 41 TGGAGTCTGTGGGCATCCGCCTCAACAAGCACAAGCCTAAC TGGAGTCTGTGGGCATCCGCCTTAACAAGCACAAGCCTAAC < 41bp 0.730901459436791 0.431627509996157 0.124058306 0.06505367 prediction 0.461802918873581 Functional Loss - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18003717 chr17:18003719 stopgain . 0 23 hm5C_associated_SNPs_74421 0 0 1 1 1 DRG2 chr17:18003677 3'AG 18003677 Downstream 43bp
chr10 72434327 72434327 1 + G A SKCM 72434324 + 72434304 72434344 41 TCCAACAGAGCTGCACCTCTCTGGAAAGCTCAGTGACTATG TCCAACAGAGCTGCACCTCTCTGAAAAGCTCAGTGACTATG < 41bp 0.739336389820996 0.508437568744809 0.54208887 0.12443769 prediction 0.461797642152374 Functional Loss - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72434324 chr10:72434327 nonsynonymous SNV 0.957 0 24 hm5C_associated_SNPs_74422 0 0 0 0 1 ADAMTS14 chr10:72434312 3'AG 72434312 Downstream 16bp
chrX 48417676 48417676 1 + G A UCEC 48417673 + 48417653 48417693 41 GAACCACGAGGGCCAGCTCTCCCGACCCGAGGAGTTGCGCC GAACCACGAGGGCCAGCTCTCCCAACCCGAGGAGTTGCGCC < 41bp 0.750862649020447 0.519966096779431 0.79257226 0.48215264 prediction 0.461793104482033 Functional Loss - TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48417673 chrX:48417676 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_74423 0 0 0 0 1 TBC1D25 chrX:48417734 5'GT 48417734 Upstream 59bp
chr12 110352349 110352349 1 + G A SKCM 110352346 + 110352326 110352366 41 GGGAGCAACTTATTCGAAATCTTGAGGAGGTGAGAGAGTTG GGGAGCAACTTATTCGAAATCTTAAGGAGGTGAGAGAGTTG < 41bp 0.747319208031244 0.516424393874604 0.11888301 0.15708286 prediction 0.461789628313279 Functional Loss - TCHP ENSG00000139437 CDS Human protein_coding chr12:110352346 chr12:110352349 nonsynonymous SNV 0.111 4 24 hm5C_associated_SNPs_74424 0 0 1 0 1 TCHP chr12:110352432 5'GT 110352432 Upstream 84bp
chr12 57906729 57906729 1 + T C STAD 57906728 + 57906708 57906748 41 ATTCTGAGCTGCTTAACAACCTGGGCAACTTCATCAACAGG ATTCTGAGCTGCTTAACAACCCGGGCAACTTCATCAACAGG < 41bp 0.756571664168103 0.525688407754466 0.051601738 0.19752675 prediction 0.461766512827273 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57906728 chr12:57906729 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_74427 0 0 1 0 1 MARS chr12:57906747 5'GT 57906747 Upstream 19bp
chr6 26413495 26413495 1 + G A ESCA 26413492 + 26413472 26413512 41 CCAAGGAGCCCCAGGATCTGCCAGACAACCCTGAGAGATTT CCAAGGAGCCCCAGGATCTGCCAAACAACCCTGAGAGATTT < 41bp 0.734086381275423 0.503206807803486 0.4348271 0.34357 prediction 0.461759146943875 Functional Loss - BTN3A1 ENSG00000026950 CDS Human protein_coding chr6:26413492 chr6:26413495 nonsynonymous SNV 0.007 2 24 hm5C_associated_SNPs_74428 0 0 0 1 1 BTN3A1 chr6:26413397 3'AG 26413397 Downstream 99bp
chr17 41001306 41001306 1 + G C SKCM 41001305 + 41001285 41001325 41 AATGCGTGGGGTCACCAGCGCGGGTACCGAATCCAGATCCA AATGCGTGGGGTCACCAGCGCCGGTACCGAATCCAGATCCA < 41bp 0.730878039213262 0.414064254960491 0.9110323 0.48030546 prediction 0.461756078426524 Functional Loss - AOC2 ENSG00000131480 CDS Human protein_coding chr17:41001305 chr17:41001306 nonsynonymous SNV 0.968 4 22 hm5C_associated_SNPs_74430 0 0 0 0 2 AOC2 chr17:41001307 5'GT 41001307 Upstream 2bp
chr17 41001306 41001306 1 + G C SKCM 41001305 + 41001285 41001325 41 AATGCGTGGGGTCACCAGCGCGGGTACCGAATCCAGATCCA AATGCGTGGGGTCACCAGCGCCGGTACCGAATCCAGATCCA < 41bp 0.730878039213262 0.414064254960491 0.9110323 0.48030546 prediction 0.461756078426524 Functional Loss - AOC2 ENSG00000131480 CDS Human protein_coding chr17:41001305 chr17:41001306 nonsynonymous SNV 0.968 4 22 hm5C_associated_SNPs_74430 0 0 0 0 2 AOC2 chr17:41001388 5'GT 41001388 Upstream 83bp
chr6 12294300 12294300 1 + G A CESC 12294297 + 12294277 12294317 41 AGCCAAAAAGACAAGAAGTGCTGGAATTTTTGCCAAGCAGG AGCCAAAAAGACAAGAAGTGCTGAAATTTTTGCCAAGCAGG < 41bp 0.730877336584527 0.498853887020503 0.5420817 0.4641554 prediction 0.461754673169054 Functional Loss - EDN1 ENSG00000078401 CDS Human protein_coding chr6:12294297 chr6:12294300 stopgain 1.000 0 24 hm5C_associated_SNPs_74432 0 0 0 0 1 EDN1 chr6:12294329 5'GT 12294329 Upstream 30bp
chr1 165859550 165859550 1 + C T LUAD 165859548 + 165859528 165859568 41 AGCTTCTACCGTGTCCTTACCTCGGAGCAGAAGGCCAAAGC AGCTTCTACCGTGTCCTTACCTTGGAGCAGAAGGCCAAAGC < 41bp 0.834139947807367 0.603264334517819 0.31410876 0.10404751 prediction 0.461751226579097 Functional Loss - UCK2 ENSG00000143179 CDS Human protein_coding chr1:165859548 chr1:165859550 nonsynonymous SNV 0.927 1 23 hm5C_associated_SNPs_74434 0 0 1 0 1 UCK2 chr1:165859600 5'GT 165859600 Upstream 51bp
chr14 96157121 96157121 1 + C T LUAD 96157119 + 96157099 96157139 41 GTGGCAGATGGCAGTGCATACCCGGGAGCTACTCTCCTCCG GTGGCAGATGGCAGTGCATACCTGGGAGCTACTCTCCTCCG < 41bp 0.771525796243071 0.540650975450839 0.8456913 0.5625689 prediction 0.461749641584463 Functional Loss - TCL1B ENSG00000213231 CDS Human protein_coding chr14:96157119 chr14:96157121 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_74435 0 0 0 0 1 TCL1B chr14:96157073 3'AG 96157073 Downstream 49bp
chr11 93844902 93844902 1 + G A SKCM 93844899 + 93844879 93844919 41 TCTATTTCTTTGGCAAGAATCTGGGTCCAACAGGAGCCAAG TCTATTTCTTTGGCAAGAATCTGAGTCCAACAGGAGCCAAG < 41bp 0.732266010088504 0.501391651980411 0.89069194 0.54533803 prediction 0.461748716216186 Functional Loss - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93844899 chr11:93844902 nonsynonymous SNV 0.798 1 24 hm5C_associated_SNPs_74436 0 0 0 0 1 HEPHL1 chr11:93844858 3'AG 93844858 Downstream 45bp
chrX 69459659 69459659 1 + G T UCEC 69459657 + 69459637 69459677 41 GTGCTGTTCCATAAGGATAGCAGGATGTACAAGTTCCAGAG GTGCTGTTCCATAAGGATAGCATGATGTACAAGTTCCAGAG < 41bp 0.90326729762614 0.672398373903699 0.88898706 0.25077415 prediction 0.461737847444882 Functional Loss - AWAT1 ENSG00000204195 CDS Human protein_coding chrX:69459657 chrX:69459659 nonsynonymous SNV 0.994 0 23 hm5C_associated_SNPs_74439 0 0 0 0 1 AWAT1 chrX:69459585 3'AG 69459585 Downstream 75bp
chr9 128678110 128678110 1 + A T LUSC 128678106 + 128678086 128678126 41 AGCTGCAGCCGCGGCAGCCTCTGGAGGTTCTTCAGATAACT AGCTGCAGCCGCGGCAGCCTCTGGTGGTTCTTCAGATAACT < 41bp 0.886433274540102 0.655567468279826 0.8150767 0.74455047 prediction 0.461731612520552 Functional Loss - PBX3 ENSG00000167081 CDS Human protein_coding chr9:128678106 chr9:128678110 synonymous SNV . 0 25 hm5C_associated_SNPs_74440 0 0 0 0 1 PBX3 chr9:128678206 5'GT 128678206 Upstream 97bp
chr7 150764060 150764060 1 + G T LUAD 150764057 + 150764037 150764077 41 CCACACCTCGGGCCCGACCCCGGGCCCCCCACAAGCCCCAT CCACACCTCGGGCCCGACCCCGGTCCCCCCACAAGCCCCAT < 41bp 0.730861935196925 0.327218841190047 0.88099337 0.8124943 prediction 0.461723870393851 Functional Loss - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150764057 chr7:150764060 nonsynonymous SNV 0.994 0 24 hm5C_associated_SNPs_74442 0 0 1 0 1 SLC4A2 chr7:150764080 5'GT 150764080 Upstream 21bp
chr1 206658569 206658569 1 + G A rs150333242 206658566 + 206658546 206658586 41 TCCAGATGCTCCCAAAATATCACGGAGACCCAGGAGAGCCT TCCAGATGCTCCCAAAATATCACAGAGACCCAGGAGAGCCT < 41bp 0.786691005249879 0.55582962736201 0.83183515 0.37059283 prediction 0.461722755775738 Functional Loss - IKBKE ENSG00000143466 CDS Human other chr1:206658566 chr1:206658569 synonymous SNV . 0 24 hm5C_associated_SNPs_74443 0 0 0 0 2 IKBKE chr1:206658531 3'AG 206658531 Downstream 39bp
chr1 206658569 206658569 1 + G A rs150333242 206658566 + 206658546 206658586 41 TCCAGATGCTCCCAAAATATCACGGAGACCCAGGAGAGCCT TCCAGATGCTCCCAAAATATCACAGAGACCCAGGAGAGCCT < 41bp 0.786691005249879 0.55582962736201 0.83183515 0.37059283 prediction 0.461722755775738 Functional Loss - IKBKE ENSG00000143466 CDS Human other chr1:206658566 chr1:206658569 synonymous SNV . 0 24 hm5C_associated_SNPs_74443 0 0 0 0 2 IKBKE chr1:206658643 5'GT 206658643 Upstream 75bp
chr5 93989039 93989039 1 + G T UCEC 93989036 + 93989016 93989056 41 TATACTTTGAGGAGAAAACGCAAGAAAGGAAAAGAAAGCAA TATACTTTGAGGAGAAAACGCAATAAAGGAAAAGAAAGCAA < 41bp 0.730859142159412 0.360052046640375 0.6053009 0.33355206 prediction 0.461718284318823 Functional Loss - SLF1 ENSG00000133302 CDS Human protein_coding chr5:93989036 chr5:93989039 nonsynonymous SNV 0.923 1 24 hm5C_associated_SNPs_74444 0 0 1 0 2 SLF1 chr5:93988977 3'AG 93988977 Downstream 63bp
chr5 93989039 93989039 1 + G T UCEC 93989036 + 93989016 93989056 41 TATACTTTGAGGAGAAAACGCAAGAAAGGAAAAGAAAGCAA TATACTTTGAGGAGAAAACGCAATAAAGGAAAAGAAAGCAA < 41bp 0.730859142159412 0.360052046640375 0.6053009 0.33355206 prediction 0.461718284318823 Functional Loss - SLF1 ENSG00000133302 CDS Human protein_coding chr5:93989036 chr5:93989039 nonsynonymous SNV 0.923 1 24 hm5C_associated_SNPs_74444 0 0 1 0 2 SLF1 chr5:93989126 5'GT 93989126 Upstream 88bp
chr7 138874099 138874099 1 + G C HNSC 138874095 + 138874075 138874115 41 TTCGAGAAGTGCTCCATTTACTGAGAAGCACAGGTAACACC TTCGAGAAGTGCTCCATTTACTGACAAGCACAGGTAACACC < 41bp 0.730854719087213 0.448138388450709 0.12823242 0.04791203 prediction 0.461709438174426 Functional Loss - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138874095 chr7:138874099 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_74450 0 0 0 0 1 TTC26 chr7:138874067 3'AG 138874067 Downstream 33bp
chr22 29696151 29696151 1 + G T STAD 29696148 + 29696128 29696168 41 GAGCGCAGAGATCGGCCCTACTAGATGCAGAGACCCCGCAG GAGCGCAGAGATCGGCCCTACTATATGCAGAGACCCCGCAG < 41bp 0.915913502434862 0.685062796380152 0.28985056 0.29433525 prediction 0.461701412109421 Functional Loss - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29696148 chr22:29696151 stoploss 0.991 0 24 hm5C_associated_SNPs_74451 0 0 1 0 1 EWSR1 chr22:29696112 3'AG 29696112 Downstream 40bp
chr10 71266623 71266623 1 + G A CESC 71266620 + 71266600 71266640 41 CTGACGCTGCTGTACATCACCCGGGTGGAGGACATCATCAT CTGACGCTGCTGTACATCACCCGAGTGGAGGACATCATCAT < 41bp 0.750498574691755 0.519649930104474 0.48110777 0.34484908 prediction 0.461697289174562 Functional Loss - TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71266620 chr10:71266623 synonymous SNV . 0 24 hm5C_associated_SNPs_74452 0 0 1 0 1 TSPAN15 chr10:71266585 3'AG 71266585 Downstream 39bp
chr6 167721317 167721317 1 + C T HNSC 167721315 + 167721295 167721335 41 TGCCCTACTGCTGTGGAGACCTCGTGCTGACCATCTGGCAG TGCCCTACTGCTGTGGAGACCTTGTGCTGACCATCTGGCAG < 41bp 0.730846862847158 0.44792271123628 0.07974258 0.0644542 prediction 0.461693725694316 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167721315 chr6:167721317 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_74453 0 0 0 0 2 UNC93A chr6:167721267 3'AG 167721267 Downstream 51bp
chr6 167721317 167721317 1 + C T HNSC 167721315 + 167721295 167721335 41 TGCCCTACTGCTGTGGAGACCTCGTGCTGACCATCTGGCAG TGCCCTACTGCTGTGGAGACCTTGTGCTGACCATCTGGCAG < 41bp 0.730846862847158 0.44792271123628 0.07974258 0.0644542 prediction 0.461693725694316 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167721315 chr6:167721317 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_74453 0 0 0 0 2 UNC93A chr6:167721398 5'GT 167721398 Upstream 82bp
chr6 167721318 167721318 1 + G A LGG 167721315 + 167721295 167721335 41 TGCCCTACTGCTGTGGAGACCTCGTGCTGACCATCTGGCAG TGCCCTACTGCTGTGGAGACCTCATGCTGACCATCTGGCAG < 41bp 0.730846862847158 0.484082797439596 0.07974258 0.077130735 prediction 0.461693725694316 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167721315 chr6:167721318 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_74454 0 0 0 0 2 UNC93A chr6:167721267 3'AG 167721267 Downstream 52bp
chr6 167721318 167721318 1 + G A LGG 167721315 + 167721295 167721335 41 TGCCCTACTGCTGTGGAGACCTCGTGCTGACCATCTGGCAG TGCCCTACTGCTGTGGAGACCTCATGCTGACCATCTGGCAG < 41bp 0.730846862847158 0.484082797439596 0.07974258 0.077130735 prediction 0.461693725694316 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167721315 chr6:167721318 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_74454 0 0 0 0 2 UNC93A chr6:167721398 5'GT 167721398 Upstream 81bp
chr1 12183394 12183394 1 + G A UCEC 12183391 + 12183371 12183411 41 CGCCACCCCTGGGGACCCAGCCGGACTGCAACCCCACCCCA CGCCACCCCTGGGGACCCAGCCGAACTGCAACCCCACCCCA < 41bp 0.808376446569931 0.577533993329382 0.86810684 0.31527418 prediction 0.461684906481098 Functional Loss - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12183391 chr1:12183394 nonsynonymous SNV 0.032 0 24 hm5C_associated_SNPs_74455 0 0 0 0 2 TNFRSF8 chr1:12183341 3'AG 12183341 Downstream 54bp
chr1 12183394 12183394 1 + G A UCEC 12183391 + 12183371 12183411 41 CGCCACCCCTGGGGACCCAGCCGGACTGCAACCCCACCCCA CGCCACCCCTGGGGACCCAGCCGAACTGCAACCCCACCCCA < 41bp 0.808376446569931 0.577533993329382 0.86810684 0.31527418 prediction 0.461684906481098 Functional Loss - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12183391 chr1:12183394 nonsynonymous SNV 0.032 0 24 hm5C_associated_SNPs_74455 0 0 0 0 2 TNFRSF8 chr1:12183434 5'GT 12183434 Upstream 41bp
chr16 22926300 22926300 1 + C T LUSC 22926298 + 22926278 22926318 41 AGGACCCTCGAGAGCCAGATCACGCTGGAGAAGACGCCCAG AGGACCCTCGAGAGCCAGATCATGCTGGAGAAGACGCCCAG < 41bp 0.73083636373063 0.46162196802853 0.43582654 0.41775176 prediction 0.46167272746126 Functional Loss - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926298 chr16:22926300 nonsynonymous SNV 0.981 4 23 hm5C_associated_SNPs_74457 0 0 0 2 1 HS3ST2 chr16:22926265 3'AG 22926265 Downstream 36bp
chr19 2994980 2994980 1 + C T SKCM 2994978 + 2994958 2994998 41 ACAGGCTCCGGGGAGCACGCCTCCGTGTACCAGATCACCTA ACAGGCTCCGGGGAGCACGCCTTCGTGTACCAGATCACCTA < 41bp 0.730833066640058 0.46152290871354 0.1606825 0.03763199 prediction 0.461666133280116 Functional Loss - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2994978 chr19:2994980 nonsynonymous SNV 0.121 3 23 hm5C_associated_SNPs_74458 0 0 0 0 1 TLE6 chr19:2994898 3'AG 2994898 Downstream 83bp
chr9 141069885 141069885 1 + A C ACC 141069884 + 141069864 141069904 41 ACCACGGGGACAGCCACCTGCAGCTGGAGCGCATCAACGTG ACCACGGGGACAGCCACCTGCCGCTGGAGCGCATCAACGTG < 41bp 0.730831379502495 0.478565587641498 0.31230843 0.11977923 prediction 0.46166275900499 Functional Loss - TUBBP5 ENSG00000159247 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:141069884 chr9:141069885 . . 0 22 hm5C_associated_SNPs_74459 0 0 0 0 2 TUBBP5 chr9:141069815 3'AG 141069815 Downstream 71bp
chr9 141069885 141069885 1 + A C ACC 141069884 + 141069864 141069904 41 ACCACGGGGACAGCCACCTGCAGCTGGAGCGCATCAACGTG ACCACGGGGACAGCCACCTGCCGCTGGAGCGCATCAACGTG < 41bp 0.730831379502495 0.478565587641498 0.31230843 0.11977923 prediction 0.46166275900499 Functional Loss - TUBBP5 ENSG00000159247 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:141069884 chr9:141069885 . . 0 22 hm5C_associated_SNPs_74459 0 0 0 0 2 TUBBP5 chr9:141069923 5'GT 141069923 Upstream 39bp
chr9 120466790 120466790 1 + G T LUAD 120466788 + 120466768 120466808 41 CCTGGCTGGGACTCTGATCCCAGCCATGGCCTTCCTCTCCT CCTGGCTGGGACTCTGATCCCATCCATGGCCTTCCTCTCCT < 41bp 0.730828843043188 0.417237655568174 0.3655451 0.7699268 prediction 0.461657686086377 Functional Loss - TLR4 ENSG00000136869 CDS Human protein_coding chr9:120466788 chr9:120466790 nonsynonymous SNV 0.753 0 23 hm5C_associated_SNPs_74462 0 0 0 0 1 TLR4 chr9:120466843 5'GT 120466843 Upstream 54bp
chr10 50856652 50856652 1 + G A rs4838544 50856649 + 50856629 50856669 41 GCACTGAGCATCTGCTCAAGCACGTGTGAGTCTGGATCCCA GCACTGAGCATCTGCTCAAGCACATGTGAGTCTGGATCCCA < 41bp 0.730827436943688 0.49129231389969 0.26917905 0.23266158 prediction 0.461654873887376 Functional Loss - CHAT ENSG00000070748 CDS Human protein_coding chr10:50856649 chr10:50856652 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_74463 1 0 0 0 2 CHAT chr10:50856553 3'AG 50856553 Downstream 100bp
chr10 50856652 50856652 1 + G A rs4838544 50856649 + 50856629 50856669 41 GCACTGAGCATCTGCTCAAGCACGTGTGAGTCTGGATCCCA GCACTGAGCATCTGCTCAAGCACATGTGAGTCTGGATCCCA < 41bp 0.730827436943688 0.49129231389969 0.26917905 0.23266158 prediction 0.461654873887376 Functional Loss - CHAT ENSG00000070748 CDS Human protein_coding chr10:50856649 chr10:50856652 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_74463 1 0 0 0 2 CHAT chr10:50856653 5'GT 50856653 Upstream 2bp
chr1 155701790 155701790 1 + G A UCEC 155701787 + 155701767 155701807 41 GACTGGGTCTCTCTTTAAGCCCCGGAAAGCCTATCTGCCCC GACTGGGTCTCTCTTTAAGCCCCAGAAAGCCTATCTGCCCC < 41bp 0.768356844923714 0.537533184713232 0.30745995 0.1022211 prediction 0.461647320420965 Functional Loss - DAP3 ENSG00000132676 CDS Human protein_coding chr1:155701787 chr1:155701790 nonsynonymous SNV 0.399 1 24 hm5C_associated_SNPs_74466 0 0 1 0 2 DAP3 chr1:155701735 3'AG 155701735 Downstream 56bp
chr1 155701790 155701790 1 + G A UCEC 155701787 + 155701767 155701807 41 GACTGGGTCTCTCTTTAAGCCCCGGAAAGCCTATCTGCCCC GACTGGGTCTCTCTTTAAGCCCCAGAAAGCCTATCTGCCCC < 41bp 0.768356844923714 0.537533184713232 0.30745995 0.1022211 prediction 0.461647320420965 Functional Loss - DAP3 ENSG00000132676 CDS Human protein_coding chr1:155701787 chr1:155701790 nonsynonymous SNV 0.399 1 24 hm5C_associated_SNPs_74466 0 0 1 0 2 DAP3 chr1:155701824 5'GT 155701824 Upstream 35bp
chr7 154863299 154863299 1 + C T CESC 154863297 + 154863277 154863317 41 TCTACAAGGCTGCCAAGTTCCGCGTGGGCTCCAGGAAGACC TCTACAAGGCTGCCAAGTTCCGTGTGGGCTCCAGGAAGACC < 41bp 0.798361793542689 0.567551003160351 0.3768058 0.30873972 prediction 0.461621580764676 Functional Loss - HTR5A ENSG00000157219 CDS Human protein_coding chr7:154863297 chr7:154863299 synonymous SNV . 0 23 hm5C_associated_SNPs_74469 0 0 0 0 1 HTR5A chr7:154863350 5'GT 154863350 Upstream 52bp
chrX 10085262 10085262 1 + C T SKCM 10085260 + 10085240 10085280 41 TCCAGCCGGGGCTCCCTGAGCTCGGTCAGCTTCACGGACAT TCCAGCCGGGGCTCCCTGAGCTTGGTCAGCTTCACGGACAT < 41bp 0.819376470538947 0.588567534615009 0.23366094 0.15496948 prediction 0.461617871847876 Functional Loss - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10085260 chrX:10085262 nonsynonymous SNV 0.750 3 23 hm5C_associated_SNPs_74472 0 0 0 0 1 WWC3 chrX:10085164 3'AG 10085164 Downstream 99bp
chr19 36430384 36430384 1 + A C LUAD 36430380 + 36430360 36430400 41 GCCGCTGGCCCCTGCCTCATCCCCACCCCAGTCAGCCACAC GCCGCTGGCCCCTGCCTCATCCCCCCCCCAGTCAGCCACAC < 41bp 0.730799498192191 0.318042740180742 0.09588534 0.02504763 prediction 0.461598996384382 Functional Loss - LRFN3 ENSG00000126243 CDS Human protein_coding chr19:36430380 chr19:36430384 synonymous SNV . 0 25 hm5C_associated_SNPs_74476 0 0 1 0 1 LRFN3 chr19:36430312 3'AG 36430312 Downstream 73bp
chr19 55019118 55019118 1 + G A LUAD 55019115 + 55019095 55019135 41 TTCCCTCTTAGGGGCCCTTCCCAGACCCTCCATCTCGGCTG TTCCCTCTTAGGGGCCCTTCCCAAACCCTCCATCTCGGCTG < 41bp 0.790872658935059 0.560077650823239 0.24268821 0.06218657 prediction 0.461590016223638 Functional Loss - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019115 chr19:55019118 nonsynonymous SNV 0.055 2 24 hm5C_associated_SNPs_74478 0 0 0 0 1 LAIR2 chr19:55019106 3'AG 55019106 Downstream 13bp
chr1 45169819 45169819 1 + C T UCEC 45169817 + 45169797 45169837 41 TGCGTGCTGAAGGTGCTGGGCACGATGCACCTGGAAGTCCA TGCGTGCTGAAGGTGCTGGGCATGATGCACCTGGAAGTCCA < 41bp 0.834845625953163 0.604058009771763 0.052268833 0.16479692 prediction 0.461575232362798 Functional Loss - C1orf228 ENSG00000198520 CDS Human protein_coding chr1:45169817 chr1:45169819 nonsynonymous SNV 0.838 4 23 hm5C_associated_SNPs_74482 0 0 0 0 2 C1orf228 chr1:45169761 3'AG 45169761 Downstream 59bp
chr1 45169819 45169819 1 + C T UCEC 45169817 + 45169797 45169837 41 TGCGTGCTGAAGGTGCTGGGCACGATGCACCTGGAAGTCCA TGCGTGCTGAAGGTGCTGGGCATGATGCACCTGGAAGTCCA < 41bp 0.834845625953163 0.604058009771763 0.052268833 0.16479692 prediction 0.461575232362798 Functional Loss - C1orf228 ENSG00000198520 CDS Human protein_coding chr1:45169817 chr1:45169819 nonsynonymous SNV 0.838 4 23 hm5C_associated_SNPs_74482 0 0 0 0 2 C1orf228 chr1:45169845 5'GT 45169845 Upstream 27bp
chr2 9614683 9614683 1 + G C rs376507579 9614679 + 9614659 9614699 41 TGGCTGGCGGCCCCGCCCCGCCCCGCCCGGCTGCTCCATGG TGGCTGGCGGCCCCGCCCCGCCCCCCCCGGCTGCTCCATGG < 41bp 0.730786894275885 0.452950983798668 0.16323107 0.16551194 prediction 0.46157378855177 Functional Loss - IAH1 ENSG00000134330 UTR5 Human protein_coding chr2:9614679 chr2:9614683 . . 0 25 hm5C_associated_SNPs_74483 0 0 1 0 1 IAH1 chr2:9614776 5'GT 9614776 Upstream 94bp
chr3 43756547 43756547 1 + C T SKCM 43756544 + 43756524 43756564 41 CTACCACTGTAATGTGCAGACTCCAAGGTGAGGGTTAGGAT CTACCACTGTAATGTGCAGACTCTAAGGTGAGGGTTAGGAT < 41bp 0.742824464568097 0.512051401623517 0.93033016 0.34272408 prediction 0.461546125889159 Functional Loss - ABHD5 ENSG00000011198 CDS Human protein_coding chr3:43756544 chr3:43756547 nonsynonymous SNV 0.979 5 24 hm5C_associated_SNPs_74488 0 0 1 0 1 ABHD5 chr3:43756550 5'GT 43756550 Upstream 4bp
chr7 6441972 6441972 1 + G A rs143737695 6441969 + 6441949 6441989 41 GCTGTAAAATACCTGGAGTGCTCGGCGCTCACACAGCGAGG GCTGTAAAATACCTGGAGTGCTCAGCGCTCACACAGCGAGG < 41bp 0.754194672621053 0.523422453014618 0.2731828 0.1604664 prediction 0.461544439212872 Functional Loss - RAC1 ENSG00000136238 CDS Human protein_coding chr7:6441969 chr7:6441972 synonymous SNV . 0 24 hm5C_associated_SNPs_74490 0 0 1 0 1 RAC1 chr7:6441947 3'AG 6441947 Downstream 26bp
chr3 113327017 113327017 1 + G A GBM 113327014 + 113326994 113327034 41 TCCTGCTGATAGTCTTGCGCCGCGACATCCTCCATCGGAGA TCCTGCTGATAGTCTTGCGCCGCAACATCCTCCATCGGAGA < 41bp 0.781185834099711 0.550416490025547 0.04060015 0.009943515 prediction 0.461538688148327 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113327014 chr3:113327017 nonsynonymous SNV 0.119 2 24 hm5C_associated_SNPs_74494 0 0 0 0 2 SIDT1 chr3:113326941 3'AG 113326941 Downstream 77bp
chr3 113327017 113327017 1 + G A GBM 113327014 + 113326994 113327034 41 TCCTGCTGATAGTCTTGCGCCGCGACATCCTCCATCGGAGA TCCTGCTGATAGTCTTGCGCCGCAACATCCTCCATCGGAGA < 41bp 0.781185834099711 0.550416490025547 0.04060015 0.009943515 prediction 0.461538688148327 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113327014 chr3:113327017 nonsynonymous SNV 0.119 2 24 hm5C_associated_SNPs_74494 0 0 0 0 2 SIDT1 chr3:113327064 5'GT 113327064 Upstream 48bp
chr1 171755175 171755175 1 + G T LUSC 171755172 + 171755152 171755192 41 CATCCAAGCTGAGCTGTCGGCTAGAGTCATGGAGCTGGCCC CATCCAAGCTGAGCTGTCGGCTATAGTCATGGAGCTGGCCC < 41bp 0.924116910959835 0.693358311407439 0.18073192 0.1929776 prediction 0.461517199104792 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171755172 chr1:171755175 nonsynonymous SNV 0.953 0 24 hm5C_associated_SNPs_74497 0 0 1 0 1 METTL13 chr1:171755218 5'GT 171755218 Upstream 44bp
chr8 133882057 133882057 1 + G T LUSC 133882054 + 133882034 133882074 41 AGTGCTGGGCAGCAGGCAGCCAGGACGGCCTGTGGCTTGTA AGTGCTGGGCAGCAGGCAGCCAGTACGGCCTGTGGCTTGTA < 41bp 0.730758071072423 0.357094595175917 0.6451018 0.17126837 prediction 0.461516142144846 Functional Loss - TG ENSG00000042832 CDS Human protein_coding chr8:133882054 chr8:133882057 nonsynonymous SNV 0.026 3 24 hm5C_associated_SNPs_74498 0 0 0 0 2 TG chr8:133881974 3'AG 133881974 Downstream 84bp
chr8 133882057 133882057 1 + G T LUSC 133882054 + 133882034 133882074 41 AGTGCTGGGCAGCAGGCAGCCAGGACGGCCTGTGGCTTGTA AGTGCTGGGCAGCAGGCAGCCAGTACGGCCTGTGGCTTGTA < 41bp 0.730758071072423 0.357094595175917 0.6451018 0.17126837 prediction 0.461516142144846 Functional Loss - TG ENSG00000042832 CDS Human protein_coding chr8:133882054 chr8:133882057 nonsynonymous SNV 0.026 3 24 hm5C_associated_SNPs_74498 0 0 0 0 2 TG chr8:133882071 5'GT 133882071 Upstream 15bp
chr14 94394553 94394553 1 + G A COAD 94394550 + 94394530 94394570 41 TGTTTTGTCCCCCAGGTCAGCTCGGTGCCCTTCCTTGGAGC TGTTTTGTCCCCCAGGTCAGCTCAGTGCCCTTCCTTGGAGC < 41bp 0.730751290243839 0.48613806942267 0.8151219 0.5103992 prediction 0.461502580487678 Functional Loss - FAM181A ENSG00000140067 CDS Human protein_coding chr14:94394550 chr14:94394553 synonymous SNV . 0 24 hm5C_associated_SNPs_74501 0 0 0 0 1 FAM181A chr14:94394545 3'AG 94394545 Downstream 9bp
chr16 31308876 31308876 1 + G A LUAD 31308873 + 31308853 31308893 41 GCCTCCCTCTGCTCCGTGGACGTGGACAGCAACGGCAGCAC GCCTCCCTCTGCTCCGTGGACGTAGACAGCAACGGCAGCAC < 41bp 0.730749849766338 0.48070724169845 0.3033723 0.27751023 prediction 0.461499699532677 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31308873 chr16:31308876 synonymous SNV . 0 24 hm5C_associated_SNPs_74502 0 0 0 0 1 ITGAM chr16:31308975 5'GT 31308975 Upstream 100bp
chr20 43348729 43348729 1 + C T SKCM 43348727 + 43348707 43348747 41 TCTGCCAGCCCGGGGCAGGACCCGGTGGCCGGGGGGCCCTG TCTGCCAGCCCGGGGCAGGACCTGGTGGCCGGGGGGCCCTG < 41bp 0.784840008862692 0.554098906283213 0.9159378 0.88745296 prediction 0.461482205158959 Functional Loss - WISP2 ENSG00000064205 CDS Human protein_coding chr20:43348727 chr20:43348729 synonymous SNV . 0 23 hm5C_associated_SNPs_74506 0 0 0 0 2 WISP2 chr20:43348754 5'GT 43348754 Upstream 26bp
chr20 43348729 43348729 1 + C T SKCM 43348727 + 43348707 43348747 41 TCTGCCAGCCCGGGGCAGGACCCGGTGGCCGGGGGGCCCTG TCTGCCAGCCCGGGGCAGGACCTGGTGGCCGGGGGGCCCTG < 41bp 0.784840008862692 0.554098906283213 0.9159378 0.88745296 prediction 0.461482205158959 Functional Loss - WISP2 ENSG00000064205 CDS Human protein_coding chr20:43348727 chr20:43348729 synonymous SNV . 0 23 hm5C_associated_SNPs_74506 0 0 0 0 2 WISP2 chr20:43348762 5'GT 43348762 Upstream 34bp
chr12 31244706 31244706 1 + G A UCEC 31244703 + 31244683 31244723 41 CATGCGGCCACTCGGCAGGCCGCGGGCATCCGGCTGCAGGA CATGCGGCCACTCGGCAGGCCGCAGGCATCCGGCTGCAGGA < 41bp 0.766765967551909 0.536026341602983 0.88129026 0.61676043 prediction 0.461479251897852 Functional Loss - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244703 chr12:31244706 synonymous SNV . 0 24 hm5C_associated_SNPs_74509 0 0 1 0 2 DDX11 chr12:31244653 3'AG 31244653 Downstream 54bp
chr12 31244706 31244706 1 + G A UCEC 31244703 + 31244683 31244723 41 CATGCGGCCACTCGGCAGGCCGCGGGCATCCGGCTGCAGGA CATGCGGCCACTCGGCAGGCCGCAGGCATCCGGCTGCAGGA < 41bp 0.766765967551909 0.536026341602983 0.88129026 0.61676043 prediction 0.461479251897852 Functional Loss - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244703 chr12:31244706 synonymous SNV . 0 24 hm5C_associated_SNPs_74509 0 0 1 0 2 DDX11 chr12:31244805 5'GT 31244805 Upstream 100bp
chr5 180698641 180698641 1 + A C rs182291076 180698640 + 180698620 180698660 41 TCACTGCAGCCGCCACCTCCCAGGTTCAAGCGATTCTCCTG TCACTGCAGCCGCCACCTCCCCGGTTCAAGCGATTCTCCTG < 41bp 0.772327934864942 0.541593667457909 0.4936003 0.25136566 prediction 0.461468534814065 Functional Loss - TRIM52-AS1 ENSG00000233937;ENSG00000248275 ncRNA_exonic Human other chr5:180698640 chr5:180698641 . . 0 22 hm5C_associated_SNPs_74512 0 0 0 0 1 TRIM52-AS1 chr5:180698690 5'GT 180698690 Upstream 50bp
chr12 1893103 1893103 1 + C T SKCM 1893101 + 1893081 1893121 41 CCTACCTTGCACTATGTCATCTCGGAGGGGTTCCTTAAGGC CCTACCTTGCACTATGTCATCTTGGAGGGGTTCCTTAAGGC < 41bp 0.848867094301472 0.61813692717094 0.3055122 0.14709258 prediction 0.461460334261064 Functional Loss - ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1893101 chr12:1893103 nonsynonymous SNV 0.929 0 23 hm5C_associated_SNPs_74513 0 0 1 0 1 ADIPOR2 chr12:1893046 3'AG 1893046 Downstream 58bp
chr17 17250198 17250198 1 + C T UCEC 17250196 + 17250176 17250216 41 ACCTGCAGCTGCAGCCCCCCCGCCGCAGGCTGCACTCGTGG ACCTGCAGCTGCAGCCCCCCCGTCGCAGGCTGCACTCGTGG < 41bp 0.785637353324917 0.554910002591724 0.25397032 0.17328387 prediction 0.461454701466386 Functional Loss - NT5M ENSG00000205309 CDS Human protein_coding chr17:17250196 chr17:17250198 synonymous SNV . 0 23 hm5C_associated_SNPs_74514 0 0 0 0 1 NT5M chr17:17250119 3'AG 17250119 Downstream 80bp
chr7 134925444 134925444 1 + T C COAD 134925443 + 134925423 134925463 41 CCTCAGGAAGACAGTGTACTCTCAGTCTGATCTCATAGCCT CCTCAGGAAGACAGTGTACTCCCAGTCTGATCTCATAGCCT < 41bp 0.754632591757281 0.523906653319579 0.07953623 0.107922226 prediction 0.461451876875405 Functional Loss - STRA8 ENSG00000146857 CDS Human protein_coding chr7:134925443 chr7:134925444 synonymous SNV . 0 22 hm5C_associated_SNPs_74515 0 0 0 0 1 STRA8 chr7:134925468 5'GT 134925468 Upstream 25bp
chr5 56152542 56152542 1 + G A UCEC 56152539 + 56152519 56152559 41 CCTGTATGCCAGCCTGGAAGCACGAATGGTTGGAAAGGAGA CCTGTATGCCAGCCTGGAAGCACAAATGGTTGGAAAGGAGA < 41bp 0.730725823564301 0.49835908265781 0.11701691 0.11273837 prediction 0.461451647128602 Functional Loss - MAP3K1 ENSG00000095015 CDS Human protein_coding chr5:56152539 chr5:56152542 nonsynonymous SNV 0.975 4 24 hm5C_associated_SNPs_74516 0 0 0 0 1 MAP3K1 chr5:56152577 5'GT 56152577 Upstream 36bp
chr1 100732121 100732121 1 + C T CESC 100732119 + 100732099 100732139 41 TCTCTACGGCCTTGAGCTGTCTCCTAGGCCTCCCCTTGCGG TCTCTACGGCCTTGAGCTGTCTTCTAGGCCTCCCCTTGCGG < 41bp 0.825595586027859 0.594870684842791 0.41970387 0.5292535 prediction 0.461449802370135 Functional Loss - RTCA ENSG00000137996 CDS Human protein_coding chr1:100732119 chr1:100732121 synonymous SNV . 0 23 hm5C_associated_SNPs_74517 0 0 1 0 2 RTCA chr1:100732080 3'AG 100732080 Downstream 42bp
chr1 100732121 100732121 1 + C T CESC 100732119 + 100732099 100732139 41 TCTCTACGGCCTTGAGCTGTCTCCTAGGCCTCCCCTTGCGG TCTCTACGGCCTTGAGCTGTCTTCTAGGCCTCCCCTTGCGG < 41bp 0.825595586027859 0.594870684842791 0.41970387 0.5292535 prediction 0.461449802370135 Functional Loss - RTCA ENSG00000137996 CDS Human protein_coding chr1:100732119 chr1:100732121 synonymous SNV . 0 23 hm5C_associated_SNPs_74517 0 0 1 0 2 RTCA chr1:100732180 5'GT 100732180 Upstream 60bp
chr10 75532995 75532995 1 + G A SKCM 75532992 + 75532972 75533012 41 CAGAATCGGGAGCTGCCTACCGCGCGGCTACAGGACACAGC CAGAATCGGGAGCTGCCTACCGCACGGCTACAGGACACAGC < 41bp 0.743698570108529 0.512975075910229 0.508084 0.2182706 prediction 0.461446988396601 Functional Loss - FUT11 ENSG00000196968 CDS Human protein_coding chr10:75532992 chr10:75532995 synonymous SNV . 0 24 hm5C_associated_SNPs_74518 0 0 1 0 2 FUT11 chr10:75532948 3'AG 75532948 Downstream 48bp
chr10 75532995 75532995 1 + G A SKCM 75532992 + 75532972 75533012 41 CAGAATCGGGAGCTGCCTACCGCGCGGCTACAGGACACAGC CAGAATCGGGAGCTGCCTACCGCACGGCTACAGGACACAGC < 41bp 0.743698570108529 0.512975075910229 0.508084 0.2182706 prediction 0.461446988396601 Functional Loss - FUT11 ENSG00000196968 CDS Human protein_coding chr10:75532992 chr10:75532995 synonymous SNV . 0 24 hm5C_associated_SNPs_74518 0 0 1 0 2 FUT11 chr10:75532952 3'AG 75532952 Downstream 44bp
chr5 156723741 156723741 1 + G A SKCM 156723738 + 156723718 156723758 41 ATGAGAAGACAGTAGAGGTGCTGGAGCCGGAGGTCACCAAG ATGAGAAGACAGTAGAGGTGCTGAAGCCGGAGGTCACCAAG < 41bp 0.73077444263948 0.500076617214506 0.1969384 0.18535599 prediction 0.461395650849947 Functional Loss - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156723738 chr5:156723741 nonsynonymous SNV 0.985 1 24 hm5C_associated_SNPs_74532 0 0 1 0 1 CYFIP2 chr5:156723782 5'GT 156723782 Upstream 42bp
chr15 41145408 41145408 1 + G T BRCA 41145406 + 41145386 41145426 41 GCTGAAGGATGTGGAAAACACAGATTGGCGCCTACTGCGGG GCTGAAGGATGTGGAAAACACATATTGGCGCCTACTGCGGG < 41bp 0.730697777139568 0.377549731693242 0.3514759 0.319011 prediction 0.461395554279136 Functional Loss - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41145406 chr15:41145408 nonsynonymous SNV 0.001 4 23 hm5C_associated_SNPs_74533 0 0 0 0 1 SPINT1 chr15:41145449 5'GT 41145449 Upstream 42bp
chr2 108910210 108910210 1 + G T LUSC 108910207 + 108910187 108910227 41 CAGCCTGCAACTGTGGACAACTGGAGCCAGATCCAGAGCTT CAGCCTGCAACTGTGGACAACTGTAGCCAGATCCAGAGCTT < 41bp 0.913046461651323 0.682349148744144 0.89941394 0.6265874 prediction 0.461394625814357 Functional Loss - SULT1C2 ENSG00000198203 CDS Human protein_coding chr2:108910207 chr2:108910210 nonsynonymous SNV 0.898 4 24 hm5C_associated_SNPs_74534 0 0 0 0 1 SULT1C2 chr2:108910274 5'GT 108910274 Upstream 65bp
chr18 28968861 28968861 1 + C T BLCA 28968859 + 28968839 28968879 41 CTATTGCCGGGCTCTGAATTCACGGGGTGAAGATTTAGAAA CTATTGCCGGGCTCTGAATTCATGGGGTGAAGATTTAGAAA < 41bp 0.819094229962226 0.58839803340428 0.78860533 0.68570584 prediction 0.461392393115891 Functional Loss - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28968859 chr18:28968861 nonsynonymous SNV 0.956 2 23 hm5C_associated_SNPs_74535 0 0 0 0 1 DSG4 chr18:28968837 3'AG 28968837 Downstream 25bp
chr2 96933137 96933137 1 + G T LUAD 96933135 + 96933115 96933155 41 AAGGTAGCCTGGTCCCCCTGCGGTAATTACCTGGCCTCTGC AAGGTAGCCTGGTCCCCCTGCGTTAATTACCTGGCCTCTGC < 41bp 0.730694307111233 0.38202673661375 0.4178542 0.404074 prediction 0.461388614222466 Functional Loss - CIAO1 ENSG00000144021 CDS Human protein_coding chr2:96933135 chr2:96933137 nonsynonymous SNV 0.916 4 23 hm5C_associated_SNPs_74536 0 0 1 0 2 CIAO1 chr2:96933059 3'AG 96933059 Downstream 79bp
chr2 96933137 96933137 1 + G T LUAD 96933135 + 96933115 96933155 41 AAGGTAGCCTGGTCCCCCTGCGGTAATTACCTGGCCTCTGC AAGGTAGCCTGGTCCCCCTGCGTTAATTACCTGGCCTCTGC < 41bp 0.730694307111233 0.38202673661375 0.4178542 0.404074 prediction 0.461388614222466 Functional Loss - CIAO1 ENSG00000144021 CDS Human protein_coding chr2:96933135 chr2:96933137 nonsynonymous SNV 0.916 4 23 hm5C_associated_SNPs_74536 0 0 1 0 2 CIAO1 chr2:96933207 5'GT 96933207 Upstream 71bp
chr15 33023158 33023158 1 + G A LGG 33023155 + 33023135 33023175 41 CATGTGACGGAGCGCAAATACCTGAAGCGAGACTGGTGCAA CATGTGACGGAGCGCAAATACCTAAAGCGAGACTGGTGCAA < 41bp 0.730691710894829 0.49622757352833 0.3457859 0.380126 prediction 0.461383421789657 Functional Loss - GREM1 ENSG00000166923 CDS Human protein_coding chr15:33023155 chr15:33023158 synonymous SNV . 0 24 hm5C_associated_SNPs_74537 0 0 0 0 1 GREM1 chr15:33023129 3'AG 33023129 Downstream 30bp
chr6 150464584 150464584 1 + G A UCEC 150464581 + 150464561 150464601 41 GTAAGGAGCTTCGGAAGCGGCTGGTGCTGGAGGAATGGATC GTAAGGAGCTTCGGAAGCGGCTGATGCTGGAGGAATGGATC < 41bp 0.739324945778181 0.508642906096073 0.3305567 0.36621344 prediction 0.461364079364216 Functional Loss - PPP1R14C ENSG00000198729 CDS Human protein_coding chr6:150464581 chr6:150464584 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_74542 0 0 1 0 1 PPP1R14C chr6:150464634 5'GT 150464634 Upstream 51bp
chr1 158813817 158813817 1 + C T STAD 158813815 + 158813795 158813835 41 GTCCCAAGAGCAGAGTAAGCCCCCAGGTCCCTCAGGAGCCA GTCCCAAGAGCAGAGTAAGCCCTCAGGTCCCTCAGGAGCCA < 41bp 0.843893124652688 0.613211479876596 0.3615248 0.117146045 prediction 0.461363289552184 Functional Loss - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813815 chr1:158813817 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_74543 0 0 0 0 2 MNDA chr1:158813745 3'AG 158813745 Downstream 73bp
chr1 158813817 158813817 1 + C T STAD 158813815 + 158813795 158813835 41 GTCCCAAGAGCAGAGTAAGCCCCCAGGTCCCTCAGGAGCCA GTCCCAAGAGCAGAGTAAGCCCTCAGGTCCCTCAGGAGCCA < 41bp 0.843893124652688 0.613211479876596 0.3615248 0.117146045 prediction 0.461363289552184 Functional Loss - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813815 chr1:158813817 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_74543 0 0 0 0 2 MNDA chr1:158813912 5'GT 158813912 Upstream 96bp
chr5 177034375 177034375 1 + C T COAD 177034373 + 177034353 177034393 41 GCACGGACTACATTGCCATGCACGACGTTGACCTGCTCCCT GCACGGACTACATTGCCATGCATGACGTTGACCTGCTCCCT < 41bp 0.815451146084754 0.584772566091131 0.08433199 0.17895725 prediction 0.461357159987246 Functional Loss - B4GALT7 ENSG00000027847 CDS Human protein_coding chr5:177034373 chr5:177034375 stopgain . 0 23 hm5C_associated_SNPs_74545 0 0 0 0 1 B4GALT7 chr5:177034303 3'AG 177034303 Downstream 73bp
chr10 94821918 94821918 1 + A C rs201284617 94821917 + 94821897 94821937 41 TGGTGCGCAGCCAGTGGCCGCAGAGTGCGCACATCCTGCTG TGGTGCGCAGCCAGTGGCCGCCGAGTGCGCACATCCTGCTG < 41bp 0.805494958720779 0.574824481086083 0.8218125 0.8689567 prediction 0.461340955269391 Functional Loss - CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94821917 chr10:94821918 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_74546 0 0 0 1 1 CYP26C1 chr10:94821991 5'GT 94821991 Upstream 74bp
chr17 27061926 27061926 1 + G A SKCM 27061923 + 27061903 27061943 41 CTCATCCTGCACCGAGACCTCAAGACCCAGAACATCCTGCT CTCATCCTGCACCGAGACCTCAAAACCCAGAACATCCTGCT < 41bp 0.7436778620918 0.513016888421884 0.21529695 0.102647215 prediction 0.461321947339832 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27061923 chr17:27061926 synonymous SNV . 0 24 hm5C_associated_SNPs_74549 0 0 1 0 1 NEK8 chr17:27062022 5'GT 27062022 Upstream 97bp
chr9 136243391 136243391 1 + G C CESC 136243390 + 136243370 136243410 41 GGCGCCCCACGCAGGGGGAGCGAGGCCCAGGGTCCCCCGGA GGCGCCCCACGCAGGGGGAGCCAGGCCCAGGGTCCCCCGGA < 41bp 0.869131566281884 0.638471699306196 0.9354842 0.93535423 prediction 0.461319733951377 Functional Loss - STKLD1 ENSG00000198870 CDS Human protein_coding chr9:136243390 chr9:136243391 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_74550 0 0 0 0 1 STKLD1 chr9:136243431 5'GT 136243431 Upstream 41bp
chr4 160268094 160268094 1 + C T LUSC 160268092 + 160268072 160268112 41 AACCAGGGACTACAGGTTCCCGCCGTGTCCCTTTATCCTTC AACCAGGGACTACAGGTTCCCGTCGTGTCCCTTTATCCTTC < 41bp 0.826514719790349 0.595855197809567 0.027148128 0.032725662 prediction 0.461319043961564 Functional Loss - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160268092 chr4:160268094 nonsynonymous SNV 0.776 1 23 hm5C_associated_SNPs_74551 0 0 1 0 1 RAPGEF2 chr4:160268150 5'GT 160268150 Upstream 57bp
chr4 110384735 110384735 1 + A C rs144453883 110384734 + 110384714 110384754 41 CTCCAGGCCTTCCATCGACTCAAGACAATCTCATCCGAAAC CTCCAGGCCTTCCATCGACTCCAGACAATCTCATCCGAAAC < 41bp 0.730657886477107 0.467156667002103 0.2968759 0.18016055 prediction 0.461315772954214 Functional Loss - SEC24B ENSG00000138802 CDS Human protein_coding chr4:110384734 chr4:110384735 nonsynonymous SNV 0.312 1 22 hm5C_associated_SNPs_74552 0 0 1 0 1 SEC24B chr4:110384800 5'GT 110384800 Upstream 66bp
chr1 183203558 183203558 1 + G T UCEC 183203556 + 183203536 183203576 41 ATGGCTTTAAAAGTCTGGCTCAGGAGGCCACAAGATTAGCA ATGGCTTTAAAAGTCTGGCTCATGAGGCCACAAGATTAGCA < 41bp 0.730653157595196 0.378655266672386 0.88192624 0.35486066 prediction 0.461306315190393 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183203556 chr1:183203558 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_74553 0 0 0 0 2 LAMC2 chr1:183203502 3'AG 183203502 Downstream 57bp
chr1 183203558 183203558 1 + G T UCEC 183203556 + 183203536 183203576 41 ATGGCTTTAAAAGTCTGGCTCAGGAGGCCACAAGATTAGCA ATGGCTTTAAAAGTCTGGCTCATGAGGCCACAAGATTAGCA < 41bp 0.730653157595196 0.378655266672386 0.88192624 0.35486066 prediction 0.461306315190393 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183203556 chr1:183203558 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_74553 0 0 0 0 2 LAMC2 chr1:183203581 5'GT 183203581 Upstream 24bp
chr17 61613352 61613352 1 + C T SKCM 61613350 + 61613330 61613370 41 TACTTCACCTTCAGCAGCCTCACCAGCGTGGGCTTCGGCAA TACTTCACCTTCAGCAGCCTCATCAGCGTGGGCTTCGGCAA < 41bp 0.730644100238033 0.434198656138784 0.07613328 0.06950173 prediction 0.461288200476066 Functional Loss - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61613350 chr17:61613352 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_74557 0 0 0 0 2 KCNH6 chr17:61613344 3'AG 61613344 Downstream 9bp
chr17 61613352 61613352 1 + C T SKCM 61613350 + 61613330 61613370 41 TACTTCACCTTCAGCAGCCTCACCAGCGTGGGCTTCGGCAA TACTTCACCTTCAGCAGCCTCATCAGCGTGGGCTTCGGCAA < 41bp 0.730644100238033 0.434198656138784 0.07613328 0.06950173 prediction 0.461288200476066 Functional Loss - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61613350 chr17:61613352 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_74557 0 0 0 0 2 KCNH6 chr17:61613429 5'GT 61613429 Upstream 78bp
chr8 143623373 143623373 1 + G C KIRP 143623372 + 143623352 143623392 41 CTGAAGCGGCCGTCTCTGCCCGAGGAGGAGAAGCTGAAGCT CTGAAGCGGCCGTCTCTGCCCCAGGAGGAGAAGCTGAAGCT < 41bp 0.730644030819866 0.41231811253495 0.9019818 0.59226024 prediction 0.461288061639733 Functional Loss - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143623372 chr8:143623373 nonsynonymous SNV 0.941 1 22 hm5C_associated_SNPs_74558 0 0 0 0 1 ADGRB1 chr8:143623302 3'AG 143623302 Downstream 72bp
chrX 65417678 65417678 1 + G A LUSC 65417675 + 65417655 65417695 41 TCCCATAAGAGACACAAATTCTGGCCTGGTGGGCCCGCTGC TCCCATAAGAGACACAAATTCTGACCTGGTGGGCCCGCTGC < 41bp 0.780505132876835 0.549861329475946 0.36354506 0.092166185 prediction 0.461287606801779 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65417675 chrX:65417678 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_74559 0 0 1 0 1 HEPH chrX:65417736 5'GT 65417736 Upstream 59bp
chr3 14949206 14949206 1 + C T SARC 14949204 + 14949184 14949224 41 TCCGGGGCCAAGGGGATCTCCTCCAGCCAGGAAGGGTGAGT TCCGGGGCCAAGGGGATCTCCTTCAGCCAGGAAGGGTGAGT < 41bp 0.730642638894503 0.427114409331278 0.928406 0.32829207 prediction 0.461285277789006 Functional Loss - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14949204 chr3:14949206 synonymous SNV . 0 23 hm5C_associated_SNPs_74560 0 0 0 0 1 FGD5 chr3:14949147 3'AG 14949147 Downstream 60bp
chr16 50583366 50583366 1 + G A HNSC 50583363 + 50583343 50583383 41 CGCCGTGAGCGCTGCCTGGGCTCGGAAGGGCATCGAGGAGT CGCCGTGAGCGCTGCCTGGGCTCAGAAGGGCATCGAGGAGT < 41bp 0.775643136965994 0.5450011371485 0.17333242 0.099617094 prediction 0.461283999634988 Functional Loss - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50583363 chr16:50583366 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_74561 0 0 1 0 1 NKD1 chr16:50583333 3'AG 50583333 Downstream 34bp
chr11 126201348 126201348 1 + A C UCEC 126201344 + 126201324 126201364 41 CTGCCACAGAGAAACACCTGCAGAAGTACCTGCGCCAGGAC CTGCCACAGAGAAACACCTGCAGACGTACCTGCGCCAGGAC < 41bp 0.730639329462586 0.312649173746767 0.8806937 0.8917959 prediction 0.461278658925172 Functional Loss - DCPS ENSG00000110063 CDS Human protein_coding chr11:126201344 chr11:126201348 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_74562 0 0 1 0 2 DCPS chr11:126201300 3'AG 126201300 Downstream 49bp
chr11 126201348 126201348 1 + A C UCEC 126201344 + 126201324 126201364 41 CTGCCACAGAGAAACACCTGCAGAAGTACCTGCGCCAGGAC CTGCCACAGAGAAACACCTGCAGACGTACCTGCGCCAGGAC < 41bp 0.730639329462586 0.312649173746767 0.8806937 0.8917959 prediction 0.461278658925172 Functional Loss - DCPS ENSG00000110063 CDS Human protein_coding chr11:126201344 chr11:126201348 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_74562 0 0 1 0 2 DCPS chr11:126201445 5'GT 126201445 Upstream 98bp
chr4 187005843 187005843 1 + T C LGG 187005842 + 187005822 187005862 41 AACAAGCTATTGAACAAAATCTGGATTCCATTATATTGGTT AACAAGCTATTGAACAAAATCCGGATTCCATTATATTGGTT < 41bp 0.744785224833796 0.514147217975292 0.1452851 0.1672836 prediction 0.461276013717007 Functional Loss - TLR3 ENSG00000164342 CDS Human protein_coding chr4:187005842 chr4:187005843 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_74563 0 0 0 0 1 TLR3 chr4:187005799 3'AG 187005799 Downstream 45bp
chr17 40695098 40695098 1 + G T LUSC 40695096 + 40695076 40695116 41 GCTGGCTCTTCCAGCACCAGCCGCAGTTCTGGGGGCCCGCC GCTGGCTCTTCCAGCACCAGCCTCAGTTCTGGGGGCCCGCC < 41bp 0.730636372588443 0.386746548750705 0.64170134 0.38116062 prediction 0.461272745176885 Functional Loss - NAGLU ENSG00000108784 CDS Human protein_coding chr17:40695096 chr17:40695098 synonymous SNV . 0 23 hm5C_associated_SNPs_74564 0 0 0 0 1 NAGLU chr17:40695046 3'AG 40695046 Downstream 53bp
chr17 48746767 48746767 1 + G A rs531898935 48746764 + 48746744 48746784 41 GGATCCAGAACTGCACTCTTCAGGAAAACGTGCTTTTCGGC GGATCCAGAACTGCACTCTTCAGAAAAACGTGCTTTTCGGC < 41bp 0.782581535096429 0.551947492763952 0.8746979 0.507366 prediction 0.461268084664954 Functional Loss - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48746764 chr17:48746767 nonsynonymous SNV 0.988 3 24 hm5C_associated_SNPs_74566 0 0 0 0 1 ABCC3 chr17:48746713 3'AG 48746713 Downstream 55bp
chr7 148427271 148427271 1 + G A HNSC 148427268 + 148427248 148427288 41 CTGAAGCAGATTGGCCTGGACCAGATCTGGGACGACCTCAG CTGAAGCAGATTGGCCTGGACCAAATCTGGGACGACCTCAG < 41bp 0.751205027877111 0.520572065028049 0.5165745 0.3813004 prediction 0.461265925698123 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148427268 chr7:148427271 synonymous SNV . 0 24 hm5C_associated_SNPs_74568 0 0 1 0 1 CUL1 chr7:148427354 5'GT 148427354 Upstream 84bp
chr16 55527113 55527113 1 + G A rs2287074 55527110 + 55527090 55527130 41 CTTGGCACCGGCCCCACCCCCACGCTGGGCCCTGTCACTCC CTTGGCACCGGCCCCACCCCCACACTGGGCCCTGTCACTCC < 41bp 0.730632225831716 0.476842730167119 0.17009005 0.15579632 prediction 0.461264451663433 Functional Loss - MMP2 ENSG00000087245 CDS Human protein_coding chr16:55527110 chr16:55527113 synonymous SNV . 0 24 hm5C_associated_SNPs_74569 1 0 0 0 2 MMP2 chr16:55527070 3'AG 55527070 Downstream 44bp
chr16 55527113 55527113 1 + G A rs2287074 55527110 + 55527090 55527130 41 CTTGGCACCGGCCCCACCCCCACGCTGGGCCCTGTCACTCC CTTGGCACCGGCCCCACCCCCACACTGGGCCCTGTCACTCC < 41bp 0.730632225831716 0.476842730167119 0.17009005 0.15579632 prediction 0.461264451663433 Functional Loss - MMP2 ENSG00000087245 CDS Human protein_coding chr16:55527110 chr16:55527113 synonymous SNV . 0 24 hm5C_associated_SNPs_74569 1 0 0 0 2 MMP2 chr16:55527205 5'GT 55527205 Upstream 93bp
chr22 32754414 32754414 1 + G T UCEC 32754411 + 32754391 32754431 41 GAAGATTCTACAGATGAACCCAAGGATGCGGAAGTTCCAAG GAAGATTCTACAGATGAACCCAATGATGCGGAAGTTCCAAG < 41bp 0.730627476736402 0.336661803495399 0.40165088 0.17057475 prediction 0.461254953472804 Functional Loss - RFPL3 ENSG00000128276 CDS Human protein_coding chr22:32754411 chr22:32754414 nonsynonymous SNV 0.010 3 24 hm5C_associated_SNPs_74572 0 0 0 0 1 RFPL3 chr22:32754431 5'GT 32754431 Upstream 18bp
chr22 42905063 42905063 1 + G A PRAD 42905060 + 42905040 42905080 41 AACAGCATTGACTTCGTCAGCAGGGAGCTGTGTGCGCATTC AACAGCATTGACTTCGTCAGCAGAGAGCTGTGTGCGCATTC < 41bp 0.750741517773889 0.520120991142859 0.9061616 0.87067485 prediction 0.461241053262061 Functional Loss - SERHL ENSG00000172250 ncRNA_exonic Human processed_transcript chr22:42905060 chr22:42905063 . . 0 24 hm5C_associated_SNPs_74576 0 0 1 1 2 SERHL chr22:42905034 3'AG 42905034 Downstream 30bp
chr22 42905063 42905063 1 + G A PRAD 42905060 + 42905040 42905080 41 AACAGCATTGACTTCGTCAGCAGGGAGCTGTGTGCGCATTC AACAGCATTGACTTCGTCAGCAGAGAGCTGTGTGCGCATTC < 41bp 0.750741517773889 0.520120991142859 0.9061616 0.87067485 prediction 0.461241053262061 Functional Loss - SERHL ENSG00000172250 ncRNA_exonic Human processed_transcript chr22:42905060 chr22:42905063 . . 0 24 hm5C_associated_SNPs_74576 0 0 1 1 2 SERHL chr22:42905116 5'GT 42905116 Upstream 54bp
chr8 27296909 27296909 1 + A T LUAD 27296905 + 27296885 27296925 41 TTCACGACAGCCAGTGACGTCTGGATGTTCGGTGAGTGCTG TTCACGACAGCCAGTGACGTCTGGTTGTTCGGTGAGTGCTG < 41bp 0.730618684365125 0.399190330505408 0.33948863 0.1798271 prediction 0.46123736873025 Functional Loss - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27296905 chr8:27296909 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_74579 0 0 1 0 2 PTK2B chr8:27296826 3'AG 27296826 Downstream 84bp
chr8 27296909 27296909 1 + A T LUAD 27296905 + 27296885 27296925 41 TTCACGACAGCCAGTGACGTCTGGATGTTCGGTGAGTGCTG TTCACGACAGCCAGTGACGTCTGGTTGTTCGGTGAGTGCTG < 41bp 0.730618684365125 0.399190330505408 0.33948863 0.1798271 prediction 0.46123736873025 Functional Loss - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27296905 chr8:27296909 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_74579 0 0 1 0 2 PTK2B chr8:27296915 5'GT 27296915 Upstream 7bp
chr6 7727852 7727852 1 + G A SKCM 7727849 + 7727829 7727869 41 TGGTCATGAGCTTTGTGAACCTGGGTAAGGATTTGGGGTAA TGGTCATGAGCTTTGTGAACCTGAGTAAGGATTTGGGGTAA < 41bp 0.763184665042727 0.532575362709555 0.76741344 0.5433626 prediction 0.461218604666343 Functional Loss - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7727849 chr6:7727852 nonsynonymous SNV 0.966 3 24 hm5C_associated_SNPs_74582 0 0 0 0 1 BMP6 chr6:7727852 5'GT 7727852 Upstream 1bp
chr19 36352740 36352740 1 + G T CHOL 36352738 + 36352718 36352758 41 GGATGAGGGCTTCCTGGAGGCGGGGTCGCAGGGCCGGTTCC GGATGAGGGCTTCCTGGAGGCGTGGTCGCAGGGCCGGTTCC < 41bp 0.910280510955676 0.679671621512783 0.9292947 0.89361393 prediction 0.461217778885787 Functional Loss - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36352738 chr19:36352740 nonsynonymous SNV 0.016 4 23 hm5C_associated_SNPs_74584 0 0 0 0 1 KIRREL2 chr19:36352707 3'AG 36352707 Downstream 34bp
chr2 3392343 3392343 1 + C T UCEC 3392341 + 3392321 3392361 41 CTGGCTTCCCGGCGAGGCTACGCGTGGAGTCCTGCGGGCCG CTGGCTTCCCGGCGAGGCTACGTGTGGAGTCCTGCGGGCCG < 41bp 0.799370480250425 0.568766167541135 0.53502053 0.5942872 prediction 0.46120862541858 Functional Loss - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3392341 chr2:3392343 nonsynonymous SNV 0.003 4 23 hm5C_associated_SNPs_74589 0 0 1 0 1 TRAPPC12 chr2:3392441 5'GT 3392441 Upstream 99bp
chr11 64950385 64950385 1 + G A CESC 64950382 + 64950362 64950402 41 GTACCCCAGAGCCTGGGTTACAAGGACCTGGGTCCCAATTC GTACCCCAGAGCCTGGGTTACAAAGACCTGGGTCCCAATTC < 41bp 0.782990957206723 0.552391526030229 0.9245502 0.36198807 prediction 0.461198862352987 Functional Loss - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64950382 chr11:64950385 synonymous SNV . 0 24 hm5C_associated_SNPs_74594 0 0 1 0 1 CAPN1 chr11:64950439 5'GT 64950439 Upstream 55bp
chr2 219294047 219294047 1 + G A LAML 219294044 + 219294024 219294064 41 AGGAGATCCGAGACCAGGAGCGGGGAGGGCGCACCTATGTA AGGAGATCCGAGACCAGGAGCGGAGAGGGCGCACCTATGTA < 41bp 0.799635490159646 0.569037312979425 0.73222905 0.32696643 prediction 0.461196354360443 Functional Loss - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219294044 chr2:219294047 nonsynonymous SNV 0.404 4 24 hm5C_associated_SNPs_74595 0 0 1 0 1 VIL1 chr2:219294008 3'AG 219294008 Downstream 40bp
chr14 52188778 52188778 1 + G A rs141150475 52188775 + 52188755 52188795 41 CACAGAGGACATGCTCATGTCGCGGAAGCTGAATGGACACT CACAGAGGACATGCTCATGTCGCAGAAGCTGAATGGACACT < 41bp 0.736605166741668 0.506009800378098 0.6234681 0.3024802 prediction 0.461190732727139 Functional Loss - FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52188775 chr14:52188778 nonsynonymous SNV 0.214 0 24 hm5C_associated_SNPs_74597 0 0 0 0 1 FRMD6 chr14:52188798 5'GT 52188798 Upstream 21bp
chr2 70033627 70033627 1 + G A BRCA 70033624 + 70033604 70033644 41 GTGCAAGAGCTGCGAAGGGCCATGAAGGTCTGTGCTCTTCC GTGCAAGAGCTGCGAAGGGCCATAAAGGTCTGTGCTCTTCC < 41bp 0.743311745321096 0.512718150745764 0.18829796 0.22230998 prediction 0.461187189150664 Functional Loss - ANXA4 ENSG00000196975 CDS Human protein_coding chr2:70033624 chr2:70033627 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_74599 0 0 1 0 1 ANXA4 chr2:70033630 5'GT 70033630 Upstream 4bp
chr20 4667334 4667334 1 + G C rs6052766 4667333 + 4667313 4667353 41 TGACGCGTCTCGGGCCTGCCCGGCTGCGCTGGTCTCCGCTC TGACGCGTCTCGGGCCTGCCCCGCTGCGCTGGTCTCCGCTC < 41bp 0.845972713698576 0.615379856823533 0.87625504 0.48026934 prediction 0.461185713750086 Functional Loss - PRNP ENSG00000171867 UTR5 Human protein_coding chr20:4667333 chr20:4667334 . . 0 22 hm5C_associated_SNPs_74600 0 0 1 0 1 PRNP chr20:4667382 5'GT 4667382 Upstream 49bp
chr20 43541419 43541419 1 + G T UCEC 43541416 + 43541396 43541436 41 GGTGTGGGCAACATCTTCATCAAGAACCTGGAGGACTCCAT GGTGTGGGCAACATCTTCATCAATAACCTGGAGGACTCCAT < 41bp 0.73059060009 0.354217602393154 0.20792538 0.10769394 prediction 0.46118120018 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43541416 chr20:43541419 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_74603 0 0 1 0 1 PABPC1L chr20:43541494 5'GT 43541494 Upstream 76bp
chr1 161642943 161642943 1 + C T UCEC 161642941 + 161642921 161642961 41 TCCCACAAGCAAACCACAGTCACAGTGGTGATTACCACTGC TCCCACAAGCAAACCACAGTCATAGTGGTGATTACCACTGC < 41bp 0.730590144255095 0.456748390513127 0.2525431 0.37401056 prediction 0.46118028851019 Functional Loss - FCGR2B ENSG00000072694 CDS Human protein_coding chr1:161642941 chr1:161642943 synonymous SNV . 0 23 hm5C_associated_SNPs_74604 0 0 0 0 1 FCGR2B chr1:161643019 5'GT 161643019 Upstream 77bp
chr5 167826532 167826532 1 + G A UCEC 167826529 + 167826509 167826549 41 GAGAGATGGTTCACCTCCAGCACGAGCTGCAGTTCAAAGAG GAGAGATGGTTCACCTCCAGCACAAGCTGCAGTTCAAAGAG < 41bp 0.778945878566343 0.548357554696376 0.13749167 0.069542736 prediction 0.461176647739933 Functional Loss - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167826529 chr5:167826532 nonsynonymous SNV 0.987 4 24 hm5C_associated_SNPs_74605 0 0 1 0 2 WWC1 chr5:167826493 3'AG 167826493 Downstream 40bp
chr5 167826532 167826532 1 + G A UCEC 167826529 + 167826509 167826549 41 GAGAGATGGTTCACCTCCAGCACGAGCTGCAGTTCAAAGAG GAGAGATGGTTCACCTCCAGCACAAGCTGCAGTTCAAAGAG < 41bp 0.778945878566343 0.548357554696376 0.13749167 0.069542736 prediction 0.461176647739933 Functional Loss - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167826529 chr5:167826532 nonsynonymous SNV 0.987 4 24 hm5C_associated_SNPs_74605 0 0 1 0 2 WWC1 chr5:167826572 5'GT 167826572 Upstream 41bp
chr20 1903215 1903215 1 + G A STAD 1903212 + 1903192 1903232 41 ACCTGCCAGGTGGAGCATGACGGGCAGCCAGCGGTCAGCAA ACCTGCCAGGTGGAGCATGACGGACAGCCAGCGGTCAGCAA < 41bp 0.787928749382224 0.557346108286873 0.49171972 0.21380231 prediction 0.461165282190702 Functional Loss - SIRPA ENSG00000198053 CDS Human protein_coding chr20:1903212 chr20:1903215 synonymous SNV . 0 24 hm5C_associated_SNPs_74610 0 0 0 0 1 SIRPA chr20:1903291 5'GT 1903291 Upstream 77bp
chr17 7591997 7591997 1 + C T rs17880282 7591995 + 7591975 7592015 41 TTTGGAGACTCAACCGTTAGCTCCGGACTGCTGTCCTTCAG TTTGGAGACTCAACCGTTAGCTTCGGACTGCTGTCCTTCAG < 41bp 0.774940580437142 0.544362923699823 0.32715714 0.2611558 prediction 0.461155313474638 Functional Loss - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7591995 chr17:7591997 nonsynonymous SNV 0.201 1 23 hm5C_associated_SNPs_74614 2 0 1 0 1 WRAP53 chr17:7591966 3'AG 7591966 Downstream 32bp
chr19 44589908 44589908 1 + G T CESC 44589906 + 44589886 44589926 41 GTTGGAGTCTGTTCCAGAAACAGGACCACATGAAGAGTGGT GTTGGAGTCTGTTCCAGAAACATGACCACATGAAGAGTGGT < 41bp 0.730562898703781 0.437726624428388 0.43069953 0.081481844 prediction 0.461125797407563 Functional Loss - ZNF284 ENSG00000186026 CDS Human protein_coding chr19:44589906 chr19:44589908 stopgain 0.038 0 23 hm5C_associated_SNPs_74621 0 0 1 0 1 ZNF284 chr19:44589867 3'AG 44589867 Downstream 42bp
chr8 104384013 104384013 1 + G A UCEC 104384010 + 104383990 104384030 41 GGGAAGCAAAAGGCGCAGCTCCGGCAGAGGGAGGTGGTGGA GGGAAGCAAAAGGCGCAGCTCCGACAGAGGGAGGTGGTGGA < 41bp 0.730561737282081 0.489030467905521 0.39347196 0.16101378 prediction 0.461123474564163 Functional Loss - CTHRC1 ENSG00000164932 CDS Human protein_coding chr8:104384010 chr8:104384013 synonymous SNV . 0 24 hm5C_associated_SNPs_74622 0 0 1 0 1 CTHRC1 chr8:104384034 5'GT 104384034 Upstream 22bp
chr17 9792712 9792712 1 + G T LUSC 9792710 + 9792690 9792730 41 AAGGCTGAGCTGCGGAAATACTGGGTCCGCTTCTTGCTAGC AAGGCTGAGCTGCGGAAATACTTGGTCCGCTTCTTGCTAGC < 41bp 0.899023406970569 0.66846772615416 0.90192914 0.24750158 prediction 0.46111136163282 Functional Loss - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9792710 chr17:9792712 nonsynonymous SNV 0.795 3 23 hm5C_associated_SNPs_74625 0 0 0 0 1 GLP2R chr17:9792687 3'AG 9792687 Downstream 26bp
chr20 23473680 23473680 1 + C T LUSC 23473678 + 23473658 23473698 41 TTAAGCACTAATGAAATCTGCGCCATTCAAGAAAACTCCAA TTAAGCACTAATGAAATCTGCGTCATTCAAGAAAACTCCAA < 41bp 0.730553058340665 0.453362032855447 0.071264654 0.16711962 prediction 0.461106116681329 Functional Loss - CST8 ENSG00000125815 CDS Human protein_coding chr20:23473678 chr20:23473680 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_74626 0 0 0 0 1 CST8 chr20:23473595 3'AG 23473595 Downstream 86bp
chr20 368883 368883 1 + G A rs61740293 368880 + 368860 368900 41 GGCCCTATGTCCTCCTGGAGCCCGAGGAGGGCGGGCGGGCC GGCCCTATGTCCTCCTGGAGCCCAAGGAGGGCGGGCGGGCC < 41bp 0.784005484316501 0.553452829470366 0.8666035 0.6918104 prediction 0.46110530969227 Functional Loss - TRIB3 ENSG00000101255 CDS Human protein_coding chr20:368880 chr20:368883 nonsynonymous SNV 0.029 0 24 hm5C_associated_SNPs_74627 0 0 1 0 1 TRIB3 chr20:368945 5'GT 368945 Upstream 63bp
chr16 3100089 3100089 1 + G T COAD 3100087 + 3100067 3100107 41 GGGTGGCGGGGCTGGTCAGGCGGCGTCGCCGGTACGCTCTG GGGTGGCGGGGCTGGTCAGGCGTCGTCGCCGGTACGCTCTG < 41bp 0.908619355963375 0.678069583783294 0.9064939 0.8107768 prediction 0.461099544360163 Functional Loss - MMP25 ENSG00000008516 CDS Human protein_coding chr16:3100087 chr16:3100089 synonymous SNV . 0 23 hm5C_associated_SNPs_74629 0 0 0 0 2 MMP25 chr16:3100010 3'AG 3100010 Downstream 80bp
chr16 3100089 3100089 1 + G T COAD 3100087 + 3100067 3100107 41 GGGTGGCGGGGCTGGTCAGGCGGCGTCGCCGGTACGCTCTG GGGTGGCGGGGCTGGTCAGGCGTCGTCGCCGGTACGCTCTG < 41bp 0.908619355963375 0.678069583783294 0.9064939 0.8107768 prediction 0.461099544360163 Functional Loss - MMP25 ENSG00000008516 CDS Human protein_coding chr16:3100087 chr16:3100089 synonymous SNV . 0 23 hm5C_associated_SNPs_74629 0 0 0 0 2 MMP25 chr16:3100145 5'GT 3100145 Upstream 57bp
chr5 37479969 37479969 1 + A C rs61742643 37479968 + 37479948 37479988 41 GTCATTACAGTATAGTAACACAGGAGACATGATTCTTGTTG GTCATTACAGTATAGTAACACCGGAGACATGATTCTTGTTG < 41bp 0.779681324824494 0.549133827567861 0.7709019 0.2931521 prediction 0.461094994513266 Functional Loss - WDR70 ENSG00000082068 CDS Human protein_coding chr5:37479968 chr5:37479969 synonymous SNV . 0 22 hm5C_associated_SNPs_74631 0 0 1 0 1 WDR70 chr5:37479936 3'AG 37479936 Downstream 34bp
chr11 9424896 9424896 1 + G T KIRC 9424894 + 9424874 9424914 41 AGATTACTATGTCGGAACAGCTGGATTTACCTGTGAGACAG AGATTACTATGTCGGAACAGCTTGATTTACCTGTGAGACAG < 41bp 0.883996113801625 0.653449280849999 0.7993535 0.162997 prediction 0.461093665903251 Functional Loss - IPO7 ENSG00000205339 CDS Human protein_coding chr11:9424894 chr11:9424896 synonymous SNV . 0 23 hm5C_associated_SNPs_74632 0 0 1 0 1 IPO7 chr11:9424837 3'AG 9424837 Downstream 60bp
chr2 162275557 162275557 1 + C T STAD 162275555 + 162275535 162275575 41 GCCGTCACCGCCTACCAGAACACGGATGTAAGGAGACCTAG GCCGTCACCGCCTACCAGAACATGGATGTAAGGAGACCTAG < 41bp 0.813818969541947 0.583280769003009 0.37667796 0.34364116 prediction 0.461076401077877 Functional Loss - TBR1 ENSG00000136535 CDS Human protein_coding chr2:162275555 chr2:162275557 nonsynonymous SNV 0.944 5 23 hm5C_associated_SNPs_74635 0 0 0 0 1 TBR1 chr2:162275561 5'GT 162275561 Upstream 5bp
chr20 10023813 10023813 1 + C T UCEC 10023811 + 10023791 10023831 41 TACCGACTAAGCGGCATTATCGCTGTGCTCTGATCGCCCTT TACCGACTAAGCGGCATTATCGTTGTGCTCTGATCGCCCTT < 41bp 0.730538134778332 0.455002349463472 0.59997994 0.41409713 prediction 0.461076269556663 Functional Loss - ANKEF1 ENSG00000132623 CDS Human protein_coding chr20:10023811 chr20:10023813 synonymous SNV . 0 23 hm5C_associated_SNPs_74636 0 0 1 0 1 ANKEF1 chr20:10023770 3'AG 10023770 Downstream 44bp
chr9 35733117 35733117 1 + G A UCEC 35733114 + 35733094 35733134 41 TGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTATGG TGACCACACCTACTCCCTCCCACAGGAAACTGTCTCTATGG < 41bp 0.783782153033077 0.553244939883679 0.10678339 0.044570327 prediction 0.461074426298796 Functional Loss - CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733114 chr9:35733117 nonsynonymous SNV 0.203 0 24 hm5C_associated_SNPs_74637 0 0 1 0 1 CREB3 chr9:35733140 5'GT 35733140 Upstream 24bp
chr9 139840987 139840987 1 + T C STAD 139840986 + 139840966 139841006 41 GGTCCAGGAGGCCCACCTGACTGAGGACCAGATCTTCTACT GGTCCAGGAGGCCCACCTGACCGAGGACCAGATCTTCTACT < 41bp 0.737469045648255 0.506935421007486 0.2710597 0.5518706 prediction 0.461067249281538 Functional Loss - C8G ENSG00000176919 CDS Human protein_coding chr9:139840986 chr9:139840987 synonymous SNV . 0 22 hm5C_associated_SNPs_74639 0 0 0 0 2 C8G chr9:139840917 3'AG 139840917 Downstream 71bp
chr9 139840987 139840987 1 + T C STAD 139840986 + 139840966 139841006 41 GGTCCAGGAGGCCCACCTGACTGAGGACCAGATCTTCTACT GGTCCAGGAGGCCCACCTGACCGAGGACCAGATCTTCTACT < 41bp 0.737469045648255 0.506935421007486 0.2710597 0.5518706 prediction 0.461067249281538 Functional Loss - C8G ENSG00000176919 CDS Human protein_coding chr9:139840986 chr9:139840987 synonymous SNV . 0 22 hm5C_associated_SNPs_74639 0 0 0 0 2 C8G chr9:139841018 5'GT 139841018 Upstream 32bp
chr15 57524992 57524992 1 + G T SARC 57524990 + 57524970 57525010 41 AGCTTTCATCGCGGCAGTACCAGCAGTTCACCTTACGTTGC AGCTTTCATCGCGGCAGTACCATCAGTTCACCTTACGTTGC < 41bp 0.873015697568467 0.642487491850832 0.5863242 0.18552187 prediction 0.46105641143527 Functional Loss - TCF12 ENSG00000140262 CDS Human protein_coding chr15:57524990 chr15:57524992 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_74641 0 0 1 0 1 TCF12 chr15:57525054 5'GT 57525054 Upstream 63bp
chr7 99688875 99688875 1 + A T COAD 99688871 + 99688851 99688891 41 CCCCTTGCAGTGGCTGAACACCTGATAGCACAGCACAGCGC CCCCTTGCAGTGGCTGAACACCTGTTAGCACAGCACAGCGC < 41bp 0.730526485373293 0.400897564526171 0.28462553 0.14202917 prediction 0.461052970746586 Functional Loss - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99688871 chr7:99688875 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_74644 0 0 1 0 2 COPS6 chr7:99688861 3'AG 99688861 Downstream 15bp
chr7 99688875 99688875 1 + A T COAD 99688871 + 99688851 99688891 41 CCCCTTGCAGTGGCTGAACACCTGATAGCACAGCACAGCGC CCCCTTGCAGTGGCTGAACACCTGTTAGCACAGCACAGCGC < 41bp 0.730526485373293 0.400897564526171 0.28462553 0.14202917 prediction 0.461052970746586 Functional Loss - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99688871 chr7:99688875 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_74644 0 0 1 0 2 COPS6 chr7:99688953 5'GT 99688953 Upstream 79bp
chr7 99688874 99688874 1 + G T COAD 99688871 + 99688851 99688891 41 CCCCTTGCAGTGGCTGAACACCTGATAGCACAGCACAGCGC CCCCTTGCAGTGGCTGAACACCTTATAGCACAGCACAGCGC < 41bp 0.730526485373293 0.330720910898416 0.28462553 0.07555798 prediction 0.461052970746586 Functional Loss - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99688871 chr7:99688874 synonymous SNV . 0 24 hm5C_associated_SNPs_74645 0 0 1 0 2 COPS6 chr7:99688861 3'AG 99688861 Downstream 14bp
chr7 99688874 99688874 1 + G T COAD 99688871 + 99688851 99688891 41 CCCCTTGCAGTGGCTGAACACCTGATAGCACAGCACAGCGC CCCCTTGCAGTGGCTGAACACCTTATAGCACAGCACAGCGC < 41bp 0.730526485373293 0.330720910898416 0.28462553 0.07555798 prediction 0.461052970746586 Functional Loss - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99688871 chr7:99688874 synonymous SNV . 0 24 hm5C_associated_SNPs_74645 0 0 1 0 2 COPS6 chr7:99688953 5'GT 99688953 Upstream 80bp
chr19 55670685 55670685 1 + G A HNSC 55670682 + 55670662 55670702 41 GTGTTGCCCAGAGCTGATTCCTGGGACTTGCAGAAACGTGC GTGTTGCCCAGAGCTGATTCCTGAGACTTGCAGAAACGTGC < 41bp 0.76948915005586 0.538970719340673 0.34041953 0.19601512 prediction 0.461036861430375 Functional Loss - DNAAF3 ENSG00000167646;ENSG00000267110 CDS Human other chr19:55670682 chr19:55670685 synonymous SNV . 0 24 hm5C_associated_SNPs_74649 0 0 0 0 1 DNAAF3 chr19:55670706 5'GT 55670706 Upstream 22bp
chr5 79361282 79361282 1 + G A rs148853281 79361279 + 79361259 79361299 41 AATGGAGCGTGCGTTCCCAACTCGATCTGCGTTAATACTTT AATGGAGCGTGCGTTCCCAACTCAATCTGCGTTAATACTTT < 41bp 0.730515657683759 0.4922327139766 0.9252305 0.48654488 prediction 0.461031315367518 Functional Loss - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79361279 chr5:79361282 synonymous SNV . 0 24 hm5C_associated_SNPs_74650 0 0 0 0 2 THBS4 chr5:79361232 3'AG 79361232 Downstream 51bp
chr5 79361282 79361282 1 + G A rs148853281 79361279 + 79361259 79361299 41 AATGGAGCGTGCGTTCCCAACTCGATCTGCGTTAATACTTT AATGGAGCGTGCGTTCCCAACTCAATCTGCGTTAATACTTT < 41bp 0.730515657683759 0.4922327139766 0.9252305 0.48654488 prediction 0.461031315367518 Functional Loss - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79361279 chr5:79361282 synonymous SNV . 0 24 hm5C_associated_SNPs_74650 0 0 0 0 2 THBS4 chr5:79361300 5'GT 79361300 Upstream 19bp
chr3 195400700 195400700 1 + C T UCEC 195400698 + 195400678 195400718 41 CCTTTCCACAGGTCCTGAGGCACGGGAATGGCCAGGATCAG CCTTTCCACAGGTCCTGAGGCATGGGAATGGCCAGGATCAG < 41bp 0.730511045210685 0.487470946099706 0.24365312 0.21906188 prediction 0.46102209042137 Functional Loss - SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195400698 chr3:195400700 . . 0 23 hm5C_associated_SNPs_74651 0 0 1 1 1 SDHAP2 chr3:195400689 3'AG 195400689 Downstream 12bp
chr4 38091583 38091583 1 + G A UCEC 38091580 + 38091560 38091600 41 AGAGCTGGGAGAGCTTCCCCCACGATCTCCTTTAGAACCAG AGAGCTGGGAGAGCTTCCCCCACAATCTCCTTTAGAACCAG < 41bp 0.759588993097761 0.529079529643308 0.40556985 0.2632228 prediction 0.461018926908906 Functional Loss - TBC1D1 ENSG00000065882 CDS Human protein_coding chr4:38091580 chr4:38091583 nonsynonymous SNV 0.971 3 24 hm5C_associated_SNPs_74654 0 0 1 0 1 TBC1D1 chr4:38091553 3'AG 38091553 Downstream 31bp
chr15 42138927 42138927 1 + T C SKCM 42138926 + 42138906 42138946 41 CGGAGCCCCACCTGTGCCTGCTGGATGTTGGCTACCTCATC CGGAGCCCCACCTGTGCCTGCCGGATGTTGGCTACCTCATC < 41bp 0.802781767960311 0.572274836817043 0.29495692 0.7314863 prediction 0.461013862286536 Functional Loss - JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42138926 chr15:42138927 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_74657 0 0 0 0 1 JMJD7-PLA2G4B;PLA2G4B chr15:42138867 3'AG 42138867 Downstream 61bp
chr6 158454626 158454626 1 + G A COAD 158454623 + 158454603 158454643 41 CCAAGGCCTGCCTCGTCTCTCGCGTTAGCTGTGAGCGCACA CCAAGGCCTGCCTCGTCTCTCGCATTAGCTGTGAGCGCACA < 41bp 0.750436928971368 0.519937100107301 0.4960706 0.34075215 prediction 0.460999657728135 Functional Loss - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158454623 chr6:158454626 nonsynonymous SNV 0.742 0 24 hm5C_associated_SNPs_74659 0 0 1 0 1 SYNJ2 chr6:158454712 5'GT 158454712 Upstream 87bp
chr17 79954329 79954329 1 + G T UCEC 79954326 + 79954306 79954346 41 AAGTGCTACGACCCCGTGGGCAAGACCCCAGGAAGCCTGGG AAGTGCTACGACCCCGTGGGCAATACCCCAGGAAGCCTGGG < 41bp 0.730499559556917 0.331357614669954 0.44281435 0.2165358 prediction 0.460999119113833 Functional Loss - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79954326 chr17:79954329 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_74660 0 0 1 0 1 ASPSCR1 chr17:79954296 3'AG 79954296 Downstream 34bp
chr20 61451327 61451327 1 + G A SKCM 61451324 + 61451304 61451344 41 CCCTGGACCCAAGGGTGCCCCTGGGGAACGGGTAAGTGCCT CCCTGGACCCAAGGGTGCCCCTGAGGAACGGGTAAGTGCCT < 41bp 0.765176683085734 0.534678021309403 0.24250326 0.12565815 prediction 0.460997323552663 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61451324 chr20:61451327 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_74661 0 0 1 0 1 COL9A3 chr20:61451334 5'GT 61451334 Upstream 8bp
chr12 32480435 32480435 1 + A T LUAD 32480431 + 32480411 32480451 41 CCATTCTTTTGGCCAACCTACAGGAGTCACAGACACAGCTG CCATTCTTTTGGCCAACCTACAGGTGTCACAGACACAGCTG < 41bp 0.87978559605363 0.649296279823692 0.3080941 0.36176562 prediction 0.460978632459877 Functional Loss - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32480431 chr12:32480435 nonsynonymous SNV 0.983 3 25 hm5C_associated_SNPs_74666 0 0 0 1 1 BICD1 chr12:32480395 3'AG 32480395 Downstream 41bp
chr19 38643532 38643532 1 + G A LUSC 38643529 + 38643509 38643549 41 CTCTTGATCCCCACTTCAGCCACGATGGGACGTCCAGCGGC CTCTTGATCCCCACTTCAGCCACAATGGGACGTCCAGCGGC < 41bp 0.770724835010686 0.540236850179733 0.19584599 0.20904812 prediction 0.460975969661906 Functional Loss - SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38643529 chr19:38643532 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_74668 0 0 1 0 2 SIPA1L3 chr19:38643480 3'AG 38643480 Downstream 53bp
chr19 38643532 38643532 1 + G A LUSC 38643529 + 38643509 38643549 41 CTCTTGATCCCCACTTCAGCCACGATGGGACGTCCAGCGGC CTCTTGATCCCCACTTCAGCCACAATGGGACGTCCAGCGGC < 41bp 0.770724835010686 0.540236850179733 0.19584599 0.20904812 prediction 0.460975969661906 Functional Loss - SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38643529 chr19:38643532 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_74668 0 0 1 0 2 SIPA1L3 chr19:38643607 5'GT 38643607 Upstream 76bp
chr19 3747982 3747982 1 + C T rs149440570 3747980 + 3747960 3748000 41 ACGGATGTGGATGATGAGCCCCCGGCTCCAGCCCTGGCCCG ACGGATGTGGATGATGAGCCCCTGGCTCCAGCCCTGGCCCG < 41bp 0.73048751914561 0.487666696340312 0.4695995 0.48382792 prediction 0.46097503829122 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3747980 chr19:3747982 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_74669 0 0 0 0 1 TJP3 chr19:3748079 5'GT 3748079 Upstream 98bp
chr10 5959443 5959443 1 + G C BLCA 5959439 + 5959419 5959459 41 ATGCGGAAGCTGGGGGAGTGCACAGAAGAGGCGCACCAGAT ATGCGGAAGCTGGGGGAGTGCACACAAGAGGCGCACCAGAT < 41bp 0.730487391329191 0.432560094623233 0.6663481 0.305239 prediction 0.460974782658383 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5959439 chr10:5959443 nonsynonymous SNV 0.698 2 25 hm5C_associated_SNPs_74670 0 0 1 0 2 FBXO18 chr10:5959383 3'AG 5959383 Downstream 61bp
chr10 5959443 5959443 1 + G C BLCA 5959439 + 5959419 5959459 41 ATGCGGAAGCTGGGGGAGTGCACAGAAGAGGCGCACCAGAT ATGCGGAAGCTGGGGGAGTGCACACAAGAGGCGCACCAGAT < 41bp 0.730487391329191 0.432560094623233 0.6663481 0.305239 prediction 0.460974782658383 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5959439 chr10:5959443 nonsynonymous SNV 0.698 2 25 hm5C_associated_SNPs_74670 0 0 1 0 2 FBXO18 chr10:5959470 5'GT 5959470 Upstream 28bp
chr1 159803058 159803058 1 + G A SKCM 159803055 + 159803035 159803075 41 CACCCCTCCATGTTCAGCACCAGGGAAGGCCTCCTACAAAG CACCCCTCCATGTTCAGCACCAGAGAAGGCCTCCTACAAAG < 41bp 0.774397254107735 0.543910025659147 0.8888855 0.7826724 prediction 0.460974456897176 Functional Loss - SLAMF8 ENSG00000158714 CDS Human protein_coding chr1:159803055 chr1:159803058 nonsynonymous SNV 0.493 2 24 hm5C_associated_SNPs_74671 0 0 0 0 1 SLAMF8 chr1:159803052 3'AG 159803052 Downstream 7bp
chr15 22332697 22332697 1 + G T LUSC 22332695 + 22332675 22332715 41 GGGCAAGAGCATCTCTTTTTCAGGATGCCTGGCCCAGATCT GGGCAAGAGCATCTCTTTTTCATGATGCCTGGCCCAGATCT < 41bp 0.869582038689938 0.639097277517257 0.9435508 0.8085418 prediction 0.460969522345361 Functional Loss - LINC02203 ENSG00000259176 ncRNA_exonic Human other chr15:22332695 chr15:22332697 . . 0 23 hm5C_associated_SNPs_74674 0 0 0 0 1 LINC02203 chr15:22332776 5'GT 22332776 Upstream 80bp
chr11 550204 550204 1 + C T UCEC 550202 + 550182 550222 41 GCGCTACTTGCAGCTGTGCCCACGCCTGGCCATGCTCACCC GCGCTACTTGCAGCTGTGCCCATGCCTGGCCATGCTCACCC < 41bp 0.801167281613639 0.570682776720922 0.5088297 0.7184692 prediction 0.460969009785434 Functional Loss - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:550202 chr11:550204 nonsynonymous SNV 0.065 2 23 hm5C_associated_SNPs_74675 0 0 0 0 1 LRRC56 chr11:550272 5'GT 550272 Upstream 69bp
chrX 49019238 49019238 1 + G A UCEC 49019235 + 49019215 49019255 41 CCGACTACTGGCCATGGAGCCGCGCACAGGGGGCGCCGCGA CCGACTACTGGCCATGGAGCCGCACACAGGGGGCGCCGCGA < 41bp 0.764450059771485 0.533966802744481 0.2099686 0.010432839 prediction 0.460966514054007 Functional Loss - MAGIX ENSG00000017621 CDS Human other chrX:49019235 chrX:49019238 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_74676 0 0 0 0 1 MAGIX chrX:49019276 5'GT 49019276 Upstream 39bp
chr20 2293603 2293603 1 + C T SKCM 2293601 + 2293581 2293621 41 TGGATAGGAGTCTGAATTTCCGCCGTGACGCTGCTACTGAT TGGATAGGAGTCTGAATTTCCGTCGTGACGCTGCTACTGAT < 41bp 0.730480965561921 0.437956735892703 0.07010478 0.06972438 prediction 0.460961931123843 Functional Loss - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2293601 chr20:2293603 synonymous SNV . 0 23 hm5C_associated_SNPs_74678 0 0 0 0 2 TGM3 chr20:2293544 3'AG 2293544 Downstream 60bp
chr20 2293603 2293603 1 + C T SKCM 2293601 + 2293581 2293621 41 TGGATAGGAGTCTGAATTTCCGCCGTGACGCTGCTACTGAT TGGATAGGAGTCTGAATTTCCGTCGTGACGCTGCTACTGAT < 41bp 0.730480965561921 0.437956735892703 0.07010478 0.06972438 prediction 0.460961931123843 Functional Loss - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2293601 chr20:2293603 synonymous SNV . 0 23 hm5C_associated_SNPs_74678 0 0 0 0 2 TGM3 chr20:2293672 5'GT 2293672 Upstream 70bp
chr1 65211041 65211041 1 + G T SARC 65211039 + 65211019 65211059 41 CCGCGCGACTGCAGCGGATGCAGCGGGAGCTGAGCAACCGC CCGCGCGACTGCAGCGGATGCATCGGGAGCTGAGCAACCGC < 41bp 0.90530311174985 0.67483429579413 0.85128707 0.52024555 prediction 0.460937631911439 Functional Loss - RAVER2 ENSG00000162437 CDS Human protein_coding chr1:65211039 chr1:65211041 nonsynonymous SNV 0.939 1 23 hm5C_associated_SNPs_74682 0 0 1 0 1 RAVER2 chr1:65211104 5'GT 65211104 Upstream 64bp
chr21 44180449 44180449 1 + C T UCEC 44180447 + 44180427 44180467 41 GCCTCCCGCAGTTCTGCGTCCACGACAACTACAGAAACAAC GCCTCCCGCAGTTCTGCGTCCATGACAACTACAGAAACAAC < 41bp 0.765551983966831 0.535085255845985 0.093426645 0.10422298 prediction 0.460933456241692 Functional Loss - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44180447 chr21:44180449 synonymous SNV . 0 23 hm5C_associated_SNPs_74684 0 0 1 0 2 PDE9A chr21:44180438 3'AG 44180438 Downstream 12bp
chr21 44180449 44180449 1 + C T UCEC 44180447 + 44180427 44180467 41 GCCTCCCGCAGTTCTGCGTCCACGACAACTACAGAAACAAC GCCTCCCGCAGTTCTGCGTCCATGACAACTACAGAAACAAC < 41bp 0.765551983966831 0.535085255845985 0.093426645 0.10422298 prediction 0.460933456241692 Functional Loss - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44180447 chr21:44180449 synonymous SNV . 0 23 hm5C_associated_SNPs_74684 0 0 1 0 2 PDE9A chr21:44180542 5'GT 44180542 Upstream 94bp
chr6 108502091 108502091 1 + C T UCEC 108502089 + 108502069 108502109 41 GGCTTTACAAGAGGTGGTGGCTCGATTTAGACAACTCCGGT GGCTTTACAAGAGGTGGTGGCTTGATTTAGACAACTCCGGT < 41bp 0.730464802617954 0.431731882754791 0.07819879 0.07795659 prediction 0.460929605235908 Functional Loss - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108502089 chr6:108502091 stopgain 1.000 1 23 hm5C_associated_SNPs_74686 0 0 0 0 2 NR2E1 chr6:108502011 3'AG 108502011 Downstream 81bp
chr6 108502091 108502091 1 + C T UCEC 108502089 + 108502069 108502109 41 GGCTTTACAAGAGGTGGTGGCTCGATTTAGACAACTCCGGT GGCTTTACAAGAGGTGGTGGCTTGATTTAGACAACTCCGGT < 41bp 0.730464802617954 0.431731882754791 0.07819879 0.07795659 prediction 0.460929605235908 Functional Loss - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108502089 chr6:108502091 stopgain 1.000 1 23 hm5C_associated_SNPs_74686 0 0 0 0 2 NR2E1 chr6:108502160 5'GT 108502160 Upstream 70bp
chr10 106160602 106160602 1 + G A CESC 106160599 + 106160579 106160619 41 AGAATCCTCAGACTTGAGATCAAGAAGCTTCGCCGGGAAAA AGAATCCTCAGACTTGAGATCAAAAAGCTTCGCCGGGAAAA < 41bp 0.766441154252376 0.535978636013517 0.88096184 0.2083584 prediction 0.460925036477719 Functional Loss - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106160599 chr10:106160602 synonymous SNV . 0 24 hm5C_associated_SNPs_74687 0 0 0 0 1 CFAP58 chr10:106160661 5'GT 106160661 Upstream 60bp
chr19 10823297 10823297 1 + G A GBM 10823294 + 10823274 10823314 41 GTTCGACTGCGTCTTCCCCACACGGACAGCGGTGAGGCTCT GTTCGACTGCGTCTTCCCCACACAGACAGCGGTGAGGCTCT < 41bp 0.77110858052944 0.540650973740877 0.3362664 0.04926294 prediction 0.460915213577126 Functional Loss - QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10823294 chr19:10823297 nonsynonymous SNV 0.929 3 24 hm5C_associated_SNPs_74689 0 0 1 0 2 QTRT1 chr19:10823229 3'AG 10823229 Downstream 69bp
chr19 10823297 10823297 1 + G A GBM 10823294 + 10823274 10823314 41 GTTCGACTGCGTCTTCCCCACACGGACAGCGGTGAGGCTCT GTTCGACTGCGTCTTCCCCACACAGACAGCGGTGAGGCTCT < 41bp 0.77110858052944 0.540650973740877 0.3362664 0.04926294 prediction 0.460915213577126 Functional Loss - QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10823294 chr19:10823297 nonsynonymous SNV 0.929 3 24 hm5C_associated_SNPs_74689 0 0 1 0 2 QTRT1 chr19:10823304 5'GT 10823304 Upstream 8bp
chr17 29280326 29280326 1 + G A BLCA 29280323 + 29280303 29280343 41 CAGCTCGTGCCATTCCTCACCAGGAACTACCTCAAACAAGG CAGCTCGTGCCATTCCTCACCAGAAACTACCTCAAACAAGG < 41bp 0.751023066628721 0.520570189711054 0.8073315 0.48907277 prediction 0.460905753835334 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29280323 chr17:29280326 synonymous SNV . 0 24 hm5C_associated_SNPs_74694 0 0 0 11 2 ADAP2 chr17:29280306 3'AG 29280306 Downstream 21bp
chr17 29280326 29280326 1 + G A BLCA 29280323 + 29280303 29280343 41 CAGCTCGTGCCATTCCTCACCAGGAACTACCTCAAACAAGG CAGCTCGTGCCATTCCTCACCAGAAACTACCTCAAACAAGG < 41bp 0.751023066628721 0.520570189711054 0.8073315 0.48907277 prediction 0.460905753835334 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29280323 chr17:29280326 synonymous SNV . 0 24 hm5C_associated_SNPs_74694 0 0 0 11 2 ADAP2 chr17:29280368 5'GT 29280368 Upstream 43bp
chr2 233404777 233404777 1 + C T LUAD 233404775 + 233404755 233404795 41 TACGACCCCAACCTGCGGCCCGCGGAACGAGACTCGGATGT TACGACCCCAACCTGCGGCCCGTGGAACGAGACTCGGATGT < 41bp 0.730450377650945 0.467150117370462 0.4035714 0.20119879 prediction 0.460900755301889 Functional Loss - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233404775 chr2:233404777 nonsynonymous SNV 0.027 1 23 hm5C_associated_SNPs_74696 0 0 0 0 2 CHRNG chr2:233404702 3'AG 233404702 Downstream 76bp
chr2 233404777 233404777 1 + C T LUAD 233404775 + 233404755 233404795 41 TACGACCCCAACCTGCGGCCCGCGGAACGAGACTCGGATGT TACGACCCCAACCTGCGGCCCGTGGAACGAGACTCGGATGT < 41bp 0.730450377650945 0.467150117370462 0.4035714 0.20119879 prediction 0.460900755301889 Functional Loss - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233404775 chr2:233404777 nonsynonymous SNV 0.027 1 23 hm5C_associated_SNPs_74696 0 0 0 0 2 CHRNG chr2:233404841 5'GT 233404841 Upstream 65bp
chr17 32953161 32953161 1 + A C rs568193524 32953160 + 32953140 32953180 41 CCCCAGCCTCTGGCCGCTCCCACCCGGCCAGCCCCAGCCCG CCCCAGCCTCTGGCCGCTCCCCCCCGGCCAGCCCCAGCCCG < 41bp 0.730448714224807 0.479000484162727 0.20251483 0.16913003 prediction 0.460897428449613 Functional Loss - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32953160 chr17:32953161 nonsynonymous SNV 0.953 0 22 hm5C_associated_SNPs_74697 0 0 0 0 1 TMEM132E chr17:32953146 3'AG 32953146 Downstream 16bp
chr17 76136959 76136959 1 + G T SARC 76136957 + 76136937 76136977 41 TGGTGGAGGACCTGTCGCGACTGCTGCCGGAGCCAGGCCCG TGGTGGAGGACCTGTCGCGACTTCTGCCGGAGCCAGGCCCG < 41bp 0.730447243560344 0.389554340411286 0.41546872 0.22295725 prediction 0.460894487120688 Functional Loss - TMC8 ENSG00000167895 CDS Human protein_coding chr17:76136957 chr17:76136959 synonymous SNV . 0 23 hm5C_associated_SNPs_74698 0 0 0 0 1 TMC8 chr17:76136915 3'AG 76136915 Downstream 45bp
chr6 33371530 33371530 1 + G A CESC 33371527 + 33371507 33371547 41 ATCAGGTGTTCCTCCCATGGCAGGAGGGAAGAAACCCAGCA ATCAGGTGTTCCTCCCATGGCAGAAGGGAAGAAACCCAGCA < 41bp 0.745001665548234 0.514561146009053 0.632128 0.35345972 prediction 0.460881039078363 Functional Loss - KIFC1 ENSG00000237649 CDS Human protein_coding chr6:33371527 chr6:33371530 nonsynonymous SNV 0.133 0 24 hm5C_associated_SNPs_74700 0 0 1 0 2 KIFC1 chr6:33371506 3'AG 33371506 Downstream 25bp
chr6 33371530 33371530 1 + G A CESC 33371527 + 33371507 33371547 41 ATCAGGTGTTCCTCCCATGGCAGGAGGGAAGAAACCCAGCA ATCAGGTGTTCCTCCCATGGCAGAAGGGAAGAAACCCAGCA < 41bp 0.745001665548234 0.514561146009053 0.632128 0.35345972 prediction 0.460881039078363 Functional Loss - KIFC1 ENSG00000237649 CDS Human protein_coding chr6:33371527 chr6:33371530 nonsynonymous SNV 0.133 0 24 hm5C_associated_SNPs_74700 0 0 1 0 2 KIFC1 chr6:33371530 3'AG 33371530 Downstream 1bp
chr3 121642098 121642098 1 + G A BLCA 121642095 + 121642075 121642115 41 CGATGGACTTTGCAAGCCATCAGGATGAATAGGAATTTGGT CGATGGACTTTGCAAGCCATCAGAATGAATAGGAATTTGGT < 41bp 0.730440121270771 0.495970232349659 0.9268909 0.86817956 prediction 0.460880242541543 Functional Loss - SLC15A2 ENSG00000163406 CDS Human protein_coding chr3:121642095 chr3:121642098 synonymous SNV . 0 24 hm5C_associated_SNPs_74701 0 0 0 0 1 SLC15A2 chr3:121642113 5'GT 121642113 Upstream 16bp
chr5 131398248 131398248 1 + G A rs146898761 131398245 + 131398225 131398265 41 CTGCCATGTCTGCCCCTGGCCACGGCCGCACCCACGGTAAG CTGCCATGTCTGCCCCTGGCCACAGCCGCACCCACGGTAAG < 41bp 0.785480101567192 0.555040389853234 0.17636934 0.12824076 prediction 0.460879423427918 Functional Loss - IL3 ENSG00000164399 CDS Human protein_coding chr5:131398245 chr5:131398248 synonymous SNV . 0 24 hm5C_associated_SNPs_74702 0 0 0 0 2 IL3 chr5:131398219 3'AG 131398219 Downstream 30bp
chr5 131398248 131398248 1 + G A rs146898761 131398245 + 131398225 131398265 41 CTGCCATGTCTGCCCCTGGCCACGGCCGCACCCACGGTAAG CTGCCATGTCTGCCCCTGGCCACAGCCGCACCCACGGTAAG < 41bp 0.785480101567192 0.555040389853234 0.17636934 0.12824076 prediction 0.460879423427918 Functional Loss - IL3 ENSG00000164399 CDS Human protein_coding chr5:131398245 chr5:131398248 synonymous SNV . 0 24 hm5C_associated_SNPs_74702 0 0 0 0 2 IL3 chr5:131398260 5'GT 131398260 Upstream 13bp
chr16 847846 847846 1 + G A rs371911391 847843 + 847823 847863 41 CCCTGTGGCCCCGCAGGGGACACGGCCCCGGAGCAGGACTC CCCTGTGGCCCCGCAGGGGACACAGCCCCGGAGCAGGACTC < 41bp 0.753226583454537 0.522787656783317 0.46680418 0.31294468 prediction 0.46087785334244 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:847843 chr16:847846 synonymous SNV . 0 24 hm5C_associated_SNPs_74704 0 0 1 0 1 CHTF18 chr16:847839 3'AG 847839 Downstream 8bp
chr10 23326291 23326291 1 + G T UCEC 23326289 + 23326269 23326309 41 TCATGCTGCAGAATGACTCTCGGAAGGGAGTGATTGGGGGC TCATGCTGCAGAATGACTCTCGTAAGGGAGTGATTGGGGGC < 41bp 0.898060673671229 0.667622352045511 0.9290844 0.74480593 prediction 0.460876643251435 Functional Loss - ARMC3 ENSG00000165309 CDS Human protein_coding chr10:23326289 chr10:23326291 synonymous SNV . 0 23 hm5C_associated_SNPs_74705 0 0 0 0 1 ARMC3 chr10:23326199 3'AG 23326199 Downstream 93bp
chr16 67917910 67917910 1 + G T LUAD 67917908 + 67917888 67917928 41 ACCACAGTGACCCCATCACTCGGGACCACATGGGCTCCGTT ACCACAGTGACCCCATCACTCGTGACCACATGGGCTCCGTT < 41bp 0.899240259960007 0.668804004539015 0.9335903 0.8151977 prediction 0.460872510841983 Functional Loss - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67917908 chr16:67917910 synonymous SNV . 0 23 hm5C_associated_SNPs_74707 0 0 1 0 1 EDC4 chr16:67917859 3'AG 67917859 Downstream 52bp
chr12 31254815 31254815 1 + G T GBM 31254813 + 31254793 31254833 41 TAACCTGTGCGGTGTGGTTCCTGGAGGGGTGGTCTGTTTCT TAACCTGTGCGGTGTGGTTCCTTGAGGGGTGGTCTGTTTCT < 41bp 0.887262615669085 0.656827211272848 0.72783375 0.28260535 prediction 0.460870808792473 Functional Loss - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31254813 chr12:31254815 stopgain 0.087 1 23 hm5C_associated_SNPs_74709 0 0 1 0 1 DDX11 chr12:31254767 3'AG 31254767 Downstream 49bp
chr11 64361242 64361242 1 + C T COAD 64361240 + 64361220 64361260 41 ACACTGCTGCAGCTGGTGGTCTCGGTCCCCTTCTTCCTCTG ACACTGCTGCAGCTGGTGGTCTTGGTCCCCTTCTTCCTCTG < 41bp 0.809674850883453 0.579253637039707 0.10253614 0.09422952 prediction 0.460842427687494 Functional Loss - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64361240 chr11:64361242 nonsynonymous SNV 0.010 3 23 hm5C_associated_SNPs_74714 0 0 0 0 1 SLC22A12 chr11:64361275 5'GT 64361275 Upstream 34bp
chr19 3746814 3746814 1 + G T UCEC 3746812 + 3746792 3746832 41 GCACGAGTGACACCTGGTACCAGGAGCTCAAGGCCATCATT GCACGAGTGACACCTGGTACCATGAGCTCAAGGCCATCATT < 41bp 0.908503828706467 0.678083459907596 0.91369665 0.18635365 prediction 0.460840737597741 Functional Loss - TJP3 ENSG00000105289;ENSG00000105289 exonic;splicing Human protein_coding chr19:3746812 chr19:3746814 nonsynonymous SNV 0.971 2 23 hm5C_associated_SNPs_74715 0 0 0 0 2 TJP3 chr19:3746774 3'AG 3746774 Downstream 41bp
chr19 3746814 3746814 1 + G T UCEC 3746812 + 3746792 3746832 41 GCACGAGTGACACCTGGTACCAGGAGCTCAAGGCCATCATT GCACGAGTGACACCTGGTACCATGAGCTCAAGGCCATCATT < 41bp 0.908503828706467 0.678083459907596 0.91369665 0.18635365 prediction 0.460840737597741 Functional Loss - TJP3 ENSG00000105289;ENSG00000105289 exonic;splicing Human protein_coding chr19:3746812 chr19:3746814 nonsynonymous SNV 0.971 2 23 hm5C_associated_SNPs_74715 0 0 0 0 2 TJP3 chr19:3746874 5'GT 3746874 Upstream 61bp
chr1 90475793 90475793 1 + G T UCEC 90475790 + 90475770 90475810 41 AAGCCCAGTGGAACCTTTATCAAGAAACCCAAACTAGCAAA AAGCCCAGTGGAACCTTTATCAATAAACCCAAACTAGCAAA < 41bp 0.905516514254522 0.675099745774561 0.49837962 0.1205996 prediction 0.460833536959923 Functional Loss - ZNF326 ENSG00000162664 CDS Human protein_coding chr1:90475790 chr1:90475793 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_74718 0 0 1 0 1 ZNF326 chr1:90475845 5'GT 90475845 Upstream 53bp
chr15 45410244 45410244 1 - C T STAD 45410247 - 45410227 45410267 41 ATCGCCCCAGGAGACTTTCCCTGGTGCCTGCGGATGTCCGA ATCGCCCCAGGAGACTTTCCCTGATGCCTGCGGATGTCCGA < 41bp 0.742880306524533 0.5124638953048 0.77973074 0.5251884 prediction 0.460832822439466 Functional Loss - DUOXA1 ENSG00000140254 CDS Human protein_coding chr15:45410247 chr15:45410244 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_74719 0 0 0 0 1 DUOXA1 chr15:45410267 3'AG 45410267 Downstream 24bp
chr18 56819825 56819825 1 + G T LUSC 56819822 + 56819802 56819842 41 CTCCTGTTCCTCACAAATTTCCGGGAAGACCCAATCAGAGC CTCCTGTTCCTCACAAATTTCCGTGAAGACCCAATCAGAGC < 41bp 0.730414842768321 0.33691620441852 0.32308757 0.16591111 prediction 0.460829685536642 Functional Loss - SEC11C ENSG00000166562 CDS Human protein_coding chr18:56819822 chr18:56819825 synonymous SNV . 0 24 hm5C_associated_SNPs_74721 0 0 1 0 2 SEC11C chr18:56819768 3'AG 56819768 Downstream 58bp
chr18 56819825 56819825 1 + G T LUSC 56819822 + 56819802 56819842 41 CTCCTGTTCCTCACAAATTTCCGGGAAGACCCAATCAGAGC CTCCTGTTCCTCACAAATTTCCGTGAAGACCCAATCAGAGC < 41bp 0.730414842768321 0.33691620441852 0.32308757 0.16591111 prediction 0.460829685536642 Functional Loss - SEC11C ENSG00000166562 CDS Human protein_coding chr18:56819822 chr18:56819825 synonymous SNV . 0 24 hm5C_associated_SNPs_74721 0 0 1 0 2 SEC11C chr18:56819917 5'GT 56819917 Upstream 93bp
chr18 56819824 56819824 1 + G T SARC 56819822 + 56819802 56819842 41 CTCCTGTTCCTCACAAATTTCCGGGAAGACCCAATCAGAGC CTCCTGTTCCTCACAAATTTCCTGGAAGACCCAATCAGAGC < 41bp 0.730414842768321 0.387441626434593 0.32308757 0.06975263 prediction 0.460829685536642 Functional Loss - SEC11C ENSG00000166562 CDS Human protein_coding chr18:56819822 chr18:56819824 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_74722 0 0 1 0 2 SEC11C chr18:56819768 3'AG 56819768 Downstream 57bp
chr18 56819824 56819824 1 + G T SARC 56819822 + 56819802 56819842 41 CTCCTGTTCCTCACAAATTTCCGGGAAGACCCAATCAGAGC CTCCTGTTCCTCACAAATTTCCTGGAAGACCCAATCAGAGC < 41bp 0.730414842768321 0.387441626434593 0.32308757 0.06975263 prediction 0.460829685536642 Functional Loss - SEC11C ENSG00000166562 CDS Human protein_coding chr18:56819822 chr18:56819824 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_74722 0 0 1 0 2 SEC11C chr18:56819917 5'GT 56819917 Upstream 94bp
chr1 110168842 110168842 1 + G A COAD 110168839 + 110168819 110168859 41 TTCCTGAAGACGGACAGTGACTCGGACCTACAGTGAGGAGG TTCCTGAAGACGGACAGTGACTCAGACCTACAGTGAGGAGG < 41bp 0.730406701005363 0.495028226098181 0.1935344 0.22702482 prediction 0.460813402010726 Functional Loss - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110168839 chr1:110168842 synonymous SNV . 0 24 hm5C_associated_SNPs_74724 0 0 1 0 2 AMPD2 chr1:110168782 3'AG 110168782 Downstream 61bp
chr1 110168842 110168842 1 + G A COAD 110168839 + 110168819 110168859 41 TTCCTGAAGACGGACAGTGACTCGGACCTACAGTGAGGAGG TTCCTGAAGACGGACAGTGACTCAGACCTACAGTGAGGAGG < 41bp 0.730406701005363 0.495028226098181 0.1935344 0.22702482 prediction 0.460813402010726 Functional Loss - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110168839 chr1:110168842 synonymous SNV . 0 24 hm5C_associated_SNPs_74724 0 0 1 0 2 AMPD2 chr1:110168850 5'GT 110168850 Upstream 9bp
chr6 168431482 168431482 1 + C T LUAD 168431480 + 168431460 168431500 41 GGTCCAGCAGAGTCTCAGAGCGCGGTCTTTGGAGATGTGTG GGTCCAGCAGAGTCTCAGAGCGTGGTCTTTGGAGATGTGTG < 41bp 0.730403182871913 0.48034077014187 0.65117246 0.54265004 prediction 0.460806365743826 Functional Loss - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168431480 chr6:168431482 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_74725 0 0 0 0 1 KIF25 chr6:168431527 5'GT 168431527 Upstream 46bp
chr17 6920597 6920597 1 + G A SKCM 6920594 + 6920574 6920614 41 AGACAGCCTGACCCTGGATTCTGGCCTTCTCATGACCTCTG AGACAGCCTGACCCTGGATTCTGACCTTCTCATGACCTCTG < 41bp 0.732981743173708 0.502580084323345 0.079215765 0.06359869 prediction 0.460803317700726 Functional Loss - C17orf49 ENSG00000161939;ENSG00000258315 CDS Human other chr17:6920594 chr17:6920597 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_74727 0 0 1 2 2 C17orf49 chr17:6920576 3'AG 6920576 Downstream 22bp
chr17 6920597 6920597 1 + G A SKCM 6920594 + 6920574 6920614 41 AGACAGCCTGACCCTGGATTCTGGCCTTCTCATGACCTCTG AGACAGCCTGACCCTGGATTCTGACCTTCTCATGACCTCTG < 41bp 0.732981743173708 0.502580084323345 0.079215765 0.06359869 prediction 0.460803317700726 Functional Loss - C17orf49 ENSG00000161939;ENSG00000258315 CDS Human other chr17:6920594 chr17:6920597 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_74727 0 0 1 2 2 C17orf49 chr17:6920580 3'AG 6920580 Downstream 18bp
chr11 64361020 64361020 1 + C T CESC 64361018 + 64360998 64361038 41 GTGGCAGGCGTCATGATGAACACGGGCACTCTCCGTAGGTC GTGGCAGGCGTCATGATGAACATGGGCACTCTCCGTAGGTC < 41bp 0.770810691583768 0.540410797815928 0.8594417 0.77986825 prediction 0.460799787535679 Functional Loss - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64361018 chr11:64361020 nonsynonymous SNV 0.515 2 23 hm5C_associated_SNPs_74728 1 0 0 0 1 SLC22A12 chr11:64361031 5'GT 64361031 Upstream 12bp
chrX 65418856 65418856 1 + C T GBM 65418854 + 65418834 65418874 41 GATATTGAGGGCTTCCAAGACTCCAATCGGATGCATGGTAT GATATTGAGGGCTTCCAAGACTTCAATCGGATGCATGGTAT < 41bp 0.730398340056024 0.424528510741336 0.94530594 0.40415263 prediction 0.460796680112049 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65418854 chrX:65418856 nonsynonymous SNV 0.894 5 23 hm5C_associated_SNPs_74729 0 0 1 0 1 HEPH chrX:65418870 5'GT 65418870 Upstream 15bp
chr17 1936810 1936810 1 + C T HNSC 1936808 + 1936788 1936828 41 ATCCATTCTAGGTCGGGCCCCTCGGGGCCGCGTGGCCAATC ATCCATTCTAGGTCGGGCCCCTTGGGGCCGCGTGGCCAATC < 41bp 0.730398141254774 0.471204467308827 0.26794463 0.27828455 prediction 0.460796282509548 Functional Loss - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1936808 chr17:1936810 nonsynonymous SNV 0.036 3 23 hm5C_associated_SNPs_74730 0 0 1 0 1 DPH1 chr17:1936799 3'AG 1936799 Downstream 12bp
chr17 66364804 66364804 1 + T C rs1558878 66364803 + 66364783 66364823 41 AGCCTGTATGGTGCAGGGCTCTGGGAGATGGACAGTCTGGT AGCCTGTATGGTGCAGGGCTCCGGGAGATGGACAGTCTGGT < 41bp 0.730397875191406 0.486707991627951 0.696296 0.8869672 prediction 0.460795750382812 Functional Loss - ARSG ENSG00000141337 CDS Human protein_coding chr17:66364803 chr17:66364804 nonsynonymous SNV 0.006 1 22 hm5C_associated_SNPs_74732 0 1 0 0 1 ARSG chr17:66364885 5'GT 66364885 Upstream 82bp
chr21 43547321 43547321 1 + G A LGG 43547318 + 43547298 43547338 41 CAACCCCGTCTAGCAACGCCCGGGACCCCATCACCTTCAGC CAACCCCGTCTAGCAACGCCCGGAACCCCATCACCTTCAGC < 41bp 0.730391328195645 0.492844774177001 0.6859839 0.31040844 prediction 0.460782656391289 Functional Loss - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43547318 chr21:43547321 nonsynonymous SNV 0.249 5 24 hm5C_associated_SNPs_74735 0 0 0 0 1 UMODL1 chr21:43547352 5'GT 43547352 Upstream 32bp
chr15 32455506 32455506 1 + C T UCEC 32455504 + 32455484 32455524 41 TCGTGCTGCAGTACCACCACCACGACCCCGACGGGGGCAAG TCGTGCTGCAGTACCACCACCATGACCCCGACGGGGGCAAG < 41bp 0.818604074583363 0.588214410727823 0.24229383 0.16425979 prediction 0.46077932771108 Functional Loss - CHRNA7 ENSG00000175344 CDS Human protein_coding chr15:32455504 chr15:32455506 synonymous SNV . 0 23 hm5C_associated_SNPs_74738 0 0 0 0 1 CHRNA7 chr15:32455427 3'AG 32455427 Downstream 80bp
chr17 80680718 80680718 1 + C T HNSC 80680716 + 80680696 80680736 41 GGAGGAACGGCCCTTTGTGGCCCGGTTTGGATTTGACGTGG GGAGGAACGGCCCTTTGTGGCCTGGTTTGGATTTGACGTGG < 41bp 0.814933551443171 0.584547414821688 0.054112196 0.08747691 prediction 0.460772273242964 Functional Loss - FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80680716 chr17:80680718 nonsynonymous SNV 0.373 3 23 hm5C_associated_SNPs_74742 0 0 1 0 2 FN3KRP chr17:80680680 3'AG 80680680 Downstream 39bp
chr17 80680718 80680718 1 + C T HNSC 80680716 + 80680696 80680736 41 GGAGGAACGGCCCTTTGTGGCCCGGTTTGGATTTGACGTGG GGAGGAACGGCCCTTTGTGGCCTGGTTTGGATTTGACGTGG < 41bp 0.814933551443171 0.584547414821688 0.054112196 0.08747691 prediction 0.460772273242964 Functional Loss - FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80680716 chr17:80680718 nonsynonymous SNV 0.373 3 23 hm5C_associated_SNPs_74742 0 0 1 0 2 FN3KRP chr17:80680762 5'GT 80680762 Upstream 45bp
chr4 148463716 148463716 1 + C T COAD 148463714 + 148463694 148463734 41 CAAGCATCCAGTGGAAGAACCACGATCAAAACAACCACAAC CAAGCATCCAGTGGAAGAACCATGATCAAAACAACCACAAC < 41bp 0.820225435762798 0.589847142819077 0.19926962 0.15201044 prediction 0.460756585887441 Functional Loss - EDNRA ENSG00000151617 CDS Human protein_coding chr4:148463714 chr4:148463716 synonymous SNV . 0 23 hm5C_associated_SNPs_74744 0 0 0 0 1 EDNRA chr4:148463630 3'AG 148463630 Downstream 87bp
chr12 123332640 123332640 1 + G T UCEC 123332638 + 123332618 123332658 41 CCGTGAAGGAGAAGCACGCCCGGCGTATCCTTGGCCGGCTC CCGTGAAGGAGAAGCACGCCCGTCGTATCCTTGGCCGGCTC < 41bp 0.73037816433212 0.378706435150386 0.84077716 0.35078728 prediction 0.460756328664239 Functional Loss - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123332638 chr12:123332640 synonymous SNV . 0 23 hm5C_associated_SNPs_74745 0 0 1 0 2 HIP1R chr12:123332578 3'AG 123332578 Downstream 63bp
chr12 123332640 123332640 1 + G T UCEC 123332638 + 123332618 123332658 41 CCGTGAAGGAGAAGCACGCCCGGCGTATCCTTGGCCGGCTC CCGTGAAGGAGAAGCACGCCCGTCGTATCCTTGGCCGGCTC < 41bp 0.73037816433212 0.378706435150386 0.84077716 0.35078728 prediction 0.460756328664239 Functional Loss - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123332638 chr12:123332640 synonymous SNV . 0 23 hm5C_associated_SNPs_74745 0 0 1 0 2 HIP1R chr12:123332641 5'GT 123332641 Upstream 2bp
chr3 141011192 141011192 1 + T C LIHC 141011191 + 141011171 141011211 41 ACTCCTGCCCAATGATTGGTCTGCAGACCAGCTCTATTTAG ACTCCTGCCCAATGATTGGTCCGCAGACCAGCTCTATTTAG < 41bp 0.780345921632116 0.549970549654181 0.17523849 0.031773776 prediction 0.46075074395587 Functional Loss - PXYLP1 ENSG00000155893 CDS Human protein_coding chr3:141011191 chr3:141011192 synonymous SNV . 0 22 hm5C_associated_SNPs_74747 0 0 0 0 1 PXYLP1 chr3:141011110 3'AG 141011110 Downstream 83bp
chr12 56963736 56963736 1 + G T rs149875820 56963734 + 56963714 56963754 41 AGCAGCACAGAAAGCTGTAACAGCACTGAAGGCCAGCGGTG AGCAGCACAGAAAGCTGTAACATCACTGAAGGCCAGCGGTG < 41bp 0.730368639587769 0.379020293231743 0.34883898 0.2504155 prediction 0.460737279175537 Functional Loss - RBMS2 ENSG00000076067 CDS Human protein_coding chr12:56963734 chr12:56963736 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_74749 0 0 0 0 2 RBMS2 chr12:56963683 3'AG 56963683 Downstream 54bp
chr12 56963736 56963736 1 + G T rs149875820 56963734 + 56963714 56963754 41 AGCAGCACAGAAAGCTGTAACAGCACTGAAGGCCAGCGGTG AGCAGCACAGAAAGCTGTAACATCACTGAAGGCCAGCGGTG < 41bp 0.730368639587769 0.379020293231743 0.34883898 0.2504155 prediction 0.460737279175537 Functional Loss - RBMS2 ENSG00000076067 CDS Human protein_coding chr12:56963734 chr12:56963736 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_74749 0 0 0 0 2 RBMS2 chr12:56963774 5'GT 56963774 Upstream 39bp
chr13 28006937 28006937 1 + C T UCEC 28006935 + 28006915 28006955 41 TGAAACGACATGCCAAGGCCCACGAGGGTGTGTACGGATAG TGAAACGACATGCCAAGGCCCATGAGGGTGTGTACGGATAG < 41bp 0.817570987740487 0.587203466544764 0.26658767 0.20297164 prediction 0.460735042391447 Functional Loss - GTF3A ENSG00000122034 CDS Human protein_coding chr13:28006935 chr13:28006937 synonymous SNV . 0 23 hm5C_associated_SNPs_74751 0 0 1 1 1 GTF3A chr13:28006868 3'AG 28006868 Downstream 70bp
chr3 100020967 100020967 1 + G T LUAD 100020965 + 100020945 100020985 41 TAAAATCCTTGCTGGAAGCACAGAAGCAGTCCATTGAGTCT TAAAATCCTTGCTGGAAGCACATAAGCAGTCCATTGAGTCT < 41bp 0.730366882477724 0.391044749128163 0.47864994 0.27396607 prediction 0.460733764955447 Functional Loss - TBC1D23 ENSG00000036054 CDS Human protein_coding chr3:100020965 chr3:100020967 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_74753 0 0 0 0 1 TBC1D23 chr3:100020911 3'AG 100020911 Downstream 57bp
chr20 43057083 43057083 1 + G T UCEC 43057081 + 43057061 43057101 41 AACACAATGCCCACTCACCTCAGCAACGGACAGATGTGTGA AACACAATGCCCACTCACCTCATCAACGGACAGATGTGTGA < 41bp 0.730365054198707 0.39015291703834 0.2706105 0.15365279 prediction 0.460730108397413 Functional Loss - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43057081 chr20:43057083 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_74754 0 0 1 0 2 HNF4A chr20:43057097 5'GT 43057097 Upstream 15bp
chr20 43057083 43057083 1 + G T UCEC 43057081 + 43057061 43057101 41 AACACAATGCCCACTCACCTCAGCAACGGACAGATGTGTGA AACACAATGCCCACTCACCTCATCAACGGACAGATGTGTGA < 41bp 0.730365054198707 0.39015291703834 0.2706105 0.15365279 prediction 0.460730108397413 Functional Loss - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43057081 chr20:43057083 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_74754 0 0 1 0 2 HNF4A chr20:43057127 5'GT 43057127 Upstream 45bp
chr22 23488859 23488859 1 + C T rs61747143 23488857 + 23488837 23488877 41 GTGAGCCGCGACCGTGTCATCGCCAGCTTCCCTAAGGTAGA GTGAGCCGCGACCGTGTCATCGTCAGCTTCCCTAAGGTAGA < 41bp 0.841661536167775 0.61129779399599 0.35321292 0.20989636 prediction 0.460727484343569 Functional Loss - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23488857 chr22:23488859 nonsynonymous SNV 0.322 0 23 hm5C_associated_SNPs_74755 0 0 0 0 2 RAB36 chr22:23488792 3'AG 23488792 Downstream 68bp
chr22 23488859 23488859 1 + C T rs61747143 23488857 + 23488837 23488877 41 GTGAGCCGCGACCGTGTCATCGCCAGCTTCCCTAAGGTAGA GTGAGCCGCGACCGTGTCATCGTCAGCTTCCCTAAGGTAGA < 41bp 0.841661536167775 0.61129779399599 0.35321292 0.20989636 prediction 0.460727484343569 Functional Loss - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23488857 chr22:23488859 nonsynonymous SNV 0.322 0 23 hm5C_associated_SNPs_74755 0 0 0 0 2 RAB36 chr22:23488872 5'GT 23488872 Upstream 14bp
chr17 79419758 79419758 1 + G A BLCA 79419755 + 79419735 79419775 41 CCTGCGGCCCCCAGGAGAGACGAGAGTTCACGGAGCCCTGC CCTGCGGCCCCCAGGAGAGACGAAAGTTCACGGAGCCCTGC < 41bp 0.743388503641818 0.51302946268548 0.8927506 0.2434009 prediction 0.460718081912675 Functional Loss - BAHCC1 ENSG00000171282 CDS Human other chr17:79419755 chr17:79419758 synonymous SNV . 0 24 hm5C_associated_SNPs_74758 0 0 0 0 1 BAHCC1 chr17:79419749 3'AG 79419749 Downstream 10bp
chr16 57719568 57719568 1 + G A LUAD 57719565 + 57719545 57719585 41 CCTCCTCCAGATGCTGGTTCCGTGAAGGGACAACCATGTAC CCTCCTCCAGATGCTGGTTCCGTAAAGGGACAACCATGTAC < 41bp 0.766969939606546 0.536613288338585 0.319039 0.12152657 prediction 0.460713302535923 Functional Loss - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57719565 chr16:57719568 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_74759 0 0 0 0 1 ADGRG3 chr16:57719555 3'AG 57719555 Downstream 14bp
chr1 150248185 150248185 1 + A C UCEC 150248181 + 150248161 150248201 41 GCAGATTTCACCATTGATTACTCCATATTTGAGTCAGAGGA GCAGATTTCACCATTGATTACTCCCTATTTGAGTCAGAGGA < 41bp 0.730354073606908 0.290811461992181 0.9644717 0.2168406 prediction 0.460708147213816 Functional Loss - C1orf54 ENSG00000118292 CDS Human protein_coding chr1:150248181 chr1:150248185 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_74760 0 0 0 0 2 C1orf54 chr1:150248150 3'AG 150248150 Downstream 36bp
chr1 150248185 150248185 1 + A C UCEC 150248181 + 150248161 150248201 41 GCAGATTTCACCATTGATTACTCCATATTTGAGTCAGAGGA GCAGATTTCACCATTGATTACTCCCTATTTGAGTCAGAGGA < 41bp 0.730354073606908 0.290811461992181 0.9644717 0.2168406 prediction 0.460708147213816 Functional Loss - C1orf54 ENSG00000118292 CDS Human protein_coding chr1:150248181 chr1:150248185 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_74760 0 0 0 0 2 C1orf54 chr1:150248208 5'GT 150248208 Upstream 24bp
chr15 28632791 28632791 1 + T C STAD 28632790 + 28632770 28632810 41 CAGTGAGGGGGAGGAGGCACCTCGGCCCATTCCTAGCATCC CAGTGAGGGGGAGGAGGCACCCCGGCCCATTCCTAGCATCC < 41bp 0.778621985524351 0.548276517574209 0.8261334 0.854524 prediction 0.460690935900284 Functional Loss - GOLGA8F;GOLGA8G ENSG00000153684 CDS Human protein_coding chr15:28632790 chr15:28632791 synonymous SNV . 0 22 hm5C_associated_SNPs_74764 0 0 0 0 1 GOLGA8F;GOLGA8G chr15:28632748 3'AG 28632748 Downstream 44bp
chr7 56045863 56045863 1 + T C HNSC 56045862 + 56045842 56045882 41 GATCTCGAGAAGACAGCTGGCTAAAATCCTTATTTGTCCGG GATCTCGAGAAGACAGCTGGCCAAAATCCTTATTTGTCCGG < 41bp 0.730342650912876 0.48114433990268 0.24812761 0.23749375 prediction 0.460685301825752 Functional Loss - NIPSNAP2 ENSG00000146729 CDS Human protein_coding chr7:56045862 chr7:56045863 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_74767 0 0 1 0 1 NIPSNAP2 chr7:56045819 3'AG 56045819 Downstream 45bp
chr19 1079932 1079932 1 + G A SKCM 1079929 + 1079909 1079949 41 CTCCGGTGCCGCCCGCAGGCCACGATCTCCTACTACCAGAT CTCCGGTGCCGCCCGCAGGCCACAATCTCCTACTACCAGAT < 41bp 0.73034175133179 0.482960973566615 0.09154263 0.05722457 prediction 0.460683502663581 Functional Loss - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1079929 chr19:1079932 synonymous SNV . 0 24 hm5C_associated_SNPs_74768 0 0 1 0 1 ARHGAP45 chr19:1079927 3'AG 1079927 Downstream 6bp
chr17 41585854 41585854 1 + G A UCEC 41585851 + 41585831 41585871 41 TCTTCCCAGTGAGATGCAGACCCGAATCTTTGACCCAGCTC TCTTCCCAGTGAGATGCAGACCCAAATCTTTGACCCAGCTC < 41bp 0.740889760741265 0.510552451601889 0.43527824 0.25636375 prediction 0.460674618278752 Functional Loss - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41585851 chr17:41585854 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_74771 0 0 1 0 1 DHX8 chr17:41585888 5'GT 41585888 Upstream 35bp
chr17 34956148 34956148 1 + G A STAD 34956145 + 34956125 34956165 41 CACAATTCGCCTTCAAACTCCACGACAAGGACCCTGAGAAG CACAATTCGCCTTCAAACTCCACAACAAGGACCCTGAGAAG < 41bp 0.766616991994367 0.536285899261043 0.039254278 0.019067168 prediction 0.460662185466648 Functional Loss - DHRS11 ENSG00000108272 CDS Human other chr17:34956145 chr17:34956148 nonsynonymous SNV 0.947 1 24 hm5C_associated_SNPs_74774 0 0 1 0 2 DHRS11 chr17:34956100 3'AG 34956100 Downstream 49bp
chr17 34956148 34956148 1 + G A STAD 34956145 + 34956125 34956165 41 CACAATTCGCCTTCAAACTCCACGACAAGGACCCTGAGAAG CACAATTCGCCTTCAAACTCCACAACAAGGACCCTGAGAAG < 41bp 0.766616991994367 0.536285899261043 0.039254278 0.019067168 prediction 0.460662185466648 Functional Loss - DHRS11 ENSG00000108272 CDS Human other chr17:34956145 chr17:34956148 nonsynonymous SNV 0.947 1 24 hm5C_associated_SNPs_74774 0 0 1 0 2 DHRS11 chr17:34956192 5'GT 34956192 Upstream 45bp
chr5 55206398 55206398 1 + G A rs113369650 55206395 + 55206375 55206415 41 CCAGCATCTTGCAGTACGGCCTGGAGTCCCTGAAACGAAAG CCAGCATCTTGCAGTACGGCCTGAAGTCCCTGAAACGAAAG < 41bp 0.73339123914606 0.503061133101863 0.1315668 0.08211666 prediction 0.460660212088394 Functional Loss - IL31RA ENSG00000164509 CDS Human protein_coding chr5:55206395 chr5:55206398 nonsynonymous SNV 0.981 1 24 hm5C_associated_SNPs_74775 0 0 0 0 1 IL31RA chr5:55206360 3'AG 55206360 Downstream 39bp
chr6 155131253 155131253 1 + G A UCEC 155131250 + 155131230 155131270 41 AGAAAGAAAGAGGAAATCATCACGGTCGTATTCAAGTGAAA AGAAAGAAAGAGGAAATCATCACAGTCGTATTCAAGTGAAA < 41bp 0.753916034668417 0.523593718850496 0.5278088 0.3028307 prediction 0.460644631635842 Functional Loss - SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155131250 chr6:155131253 nonsynonymous SNV 0.966 3 24 hm5C_associated_SNPs_74778 0 0 1 0 1 SCAF8 chr6:155131342 5'GT 155131342 Upstream 90bp
chr17 78055692 78055692 1 + G A rs371383125 78055689 + 78055669 78055709 41 CTCCAGGAACAAATGATACTCACGGAGGAGTTGCAGGCCAT CTCCAGGAACAAATGATACTCACAGAGGAGTTGCAGGCCAT < 41bp 0.771930363510598 0.541610455910999 0.9151008 0.65862423 prediction 0.460639815199199 Functional Loss - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78055689 chr17:78055692 synonymous SNV . 0 24 hm5C_associated_SNPs_74780 0 0 0 0 1 CCDC40 chr17:78055675 3'AG 78055675 Downstream 18bp
chr16 31308887 31308887 1 + G T SKCM 31308885 + 31308865 31308905 41 TCCGTGGACGTGGACAGCAACGGCAGCACCGACCTGGTCCT TCCGTGGACGTGGACAGCAACGTCAGCACCGACCTGGTCCT < 41bp 0.909977176293423 0.679658967100499 0.36191764 0.14292347 prediction 0.460636418385848 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31308885 chr16:31308887 nonsynonymous SNV 0.026 3 23 hm5C_associated_SNPs_74781 0 0 0 0 1 ITGAM chr16:31308975 5'GT 31308975 Upstream 89bp
chr16 31434706 31434706 1 + A C UCEC 31434705 + 31434685 31434725 41 AGCCAGCGAGATCTGGCCATCAGCATTAACTTCTGGGTTCC AGCCAGCGAGATCTGGCCATCCGCATTAACTTCTGGGTTCC < 41bp 0.730318068982654 0.463688239289035 0.49715662 0.20737064 prediction 0.460636137965308 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31434705 chr16:31434706 nonsynonymous SNV 0.076 0 22 hm5C_associated_SNPs_74782 0 0 0 0 2 ITGAD chr16:31434673 3'AG 31434673 Downstream 34bp
chr16 31434706 31434706 1 + A C UCEC 31434705 + 31434685 31434725 41 AGCCAGCGAGATCTGGCCATCAGCATTAACTTCTGGGTTCC AGCCAGCGAGATCTGGCCATCCGCATTAACTTCTGGGTTCC < 41bp 0.730318068982654 0.463688239289035 0.49715662 0.20737064 prediction 0.460636137965308 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31434705 chr16:31434706 nonsynonymous SNV 0.076 0 22 hm5C_associated_SNPs_74782 0 0 0 0 2 ITGAD chr16:31434780 5'GT 31434780 Upstream 75bp
chr7 100391854 100391854 1 + G C LUAD 100391850 + 100391830 100391870 41 GAGCGGGGGAGGTCTGCACCCTGGGGAACCACACCCAAGGC GAGCGGGGGAGGTCTGCACCCTGGCGAACCACACCCAAGGC < 41bp 0.855930911042912 0.625613092454227 0.73557377 0.4381237 prediction 0.460635637177369 Functional Loss - ZAN ENSG00000146839 CDS Human protein_coding chr7:100391850 chr7:100391854 nonsynonymous SNV 0.209 0 25 hm5C_associated_SNPs_74783 0 0 0 0 1 ZAN chr7:100391880 5'GT 100391880 Upstream 27bp
chr19 36029566 36029566 1 + G A SKCM 36029563 + 36029543 36029583 41 GACAACTGGTCGTGGACAACCATGAGATCTCTGTCTACCAG GACAACTGGTCGTGGACAACCATAAGATCTCTGTCTACCAG < 41bp 0.752426974597037 0.52211676231767 0.36807096 0.27338976 prediction 0.460620424558735 Functional Loss - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36029563 chr19:36029566 nonsynonymous SNV 0.801 0 24 hm5C_associated_SNPs_74789 0 0 0 0 2 GAPDHS chr19:36029479 3'AG 36029479 Downstream 88bp
chr19 36029566 36029566 1 + G A SKCM 36029563 + 36029543 36029583 41 GACAACTGGTCGTGGACAACCATGAGATCTCTGTCTACCAG GACAACTGGTCGTGGACAACCATAAGATCTCTGTCTACCAG < 41bp 0.752426974597037 0.52211676231767 0.36807096 0.27338976 prediction 0.460620424558735 Functional Loss - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36029563 chr19:36029566 nonsynonymous SNV 0.801 0 24 hm5C_associated_SNPs_74789 0 0 0 0 2 GAPDHS chr19:36029585 5'GT 36029585 Upstream 20bp
chr8 118173999 118173999 1 + A T LUSC 118173995 + 118173975 118174015 41 AGACTAACTGTGGTTTTGCACCAGAGATGCCTTGGCCACAA AGACTAACTGTGGTTTTGCACCAGTGATGCCTTGGCCACAA < 41bp 0.730303357917763 0.416571248108399 0.4238966 0.17747027 prediction 0.460606715835526 Functional Loss - SLC30A8 ENSG00000164756 CDS Human protein_coding chr8:118173995 chr8:118173999 stopgain 0.114 1 25 hm5C_associated_SNPs_74792 0 0 0 0 1 SLC30A8 chr8:118173977 3'AG 118173977 Downstream 23bp
chr1 36319147 36319147 1 + G A COAD 36319144 + 36319124 36319164 41 AGAGCAACGGCCGGGATCCTCAGGCCTTGGCTAAGGCTGTG AGAGCAACGGCCGGGATCCTCAGACCTTGGCTAAGGCTGTG < 41bp 0.732878147789118 0.502575267257413 0.8988426 0.86062455 prediction 0.46060576106341 Functional Loss - AGO4 ENSG00000134698 CDS Human protein_coding chr1:36319144 chr1:36319147 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_74793 0 0 1 0 1 AGO4 chr1:36319098 3'AG 36319098 Downstream 50bp
chr16 28990484 28990484 1 + G A UCEC 28990481 + 28990461 28990501 41 GGTCTCTCTCCCCAGCATTTCTGGCTGCTCCTCCTGACCCG GGTCTCTCTCCCCAGCATTTCTGACTGCTCCTCCTGACCCG < 41bp 0.793953307461877 0.563653478994041 0.722492 0.3038811 prediction 0.460599656935671 Functional Loss - SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28990481 chr16:28990484 stopgain 0.998 1 24 hm5C_associated_SNPs_74796 0 0 1 0 1 SPNS1 chr16:28990476 3'AG 28990476 Downstream 9bp
chr16 22558300 22558300 1 + A C COAD 22558296 + 22558276 22558316 41 CTTTTTAGACTCCCTCAGCACTGGACAGCTGAGACCACGAA CTTTTTAGACTCCCTCAGCACTGGCCAGCTGAGACCACGAA < 41bp 0.730299741354629 0.447291154675057 0.1712921 0.10055056 prediction 0.460599482709258 Functional Loss - LOC653786 ENSG00000257838 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:22558296 chr16:22558300 . . 0 25 hm5C_associated_SNPs_74797 0 0 0 0 1 LOC653786 chr16:22558377 5'GT 22558377 Upstream 78bp
chr4 145636516 145636516 1 + G A COAD 145636513 + 145636493 145636533 41 GGCAAGAAAAACCACTCTGTCTCGGCACTAGTGGGTCCTGT GGCAAGAAAAACCACTCTGTCTCAGCACTAGTGGGTCCTGT < 41bp 0.730298924592158 0.495022136997418 0.19581634 0.06968644 prediction 0.460597849184317 Functional Loss - HHIP ENSG00000164161 CDS Human protein_coding chr4:145636513 chr4:145636516 nonsynonymous SNV 0.551 4 24 hm5C_associated_SNPs_74798 0 0 0 0 2 HHIP chr4:145636452 3'AG 145636452 Downstream 65bp
chr4 145636516 145636516 1 + G A COAD 145636513 + 145636493 145636533 41 GGCAAGAAAAACCACTCTGTCTCGGCACTAGTGGGTCCTGT GGCAAGAAAAACCACTCTGTCTCAGCACTAGTGGGTCCTGT < 41bp 0.730298924592158 0.495022136997418 0.19581634 0.06968644 prediction 0.460597849184317 Functional Loss - HHIP ENSG00000164161 CDS Human protein_coding chr4:145636513 chr4:145636516 nonsynonymous SNV 0.551 4 24 hm5C_associated_SNPs_74798 0 0 0 0 2 HHIP chr4:145636582 5'GT 145636582 Upstream 67bp
chr4 145636515 145636515 1 + C T SKCM 145636513 + 145636493 145636533 41 GGCAAGAAAAACCACTCTGTCTCGGCACTAGTGGGTCCTGT GGCAAGAAAAACCACTCTGTCTTGGCACTAGTGGGTCCTGT < 41bp 0.730298924592158 0.438429036093133 0.19581634 0.12507197 prediction 0.460597849184317 Functional Loss - HHIP ENSG00000164161 CDS Human protein_coding chr4:145636513 chr4:145636515 synonymous SNV . 0 23 hm5C_associated_SNPs_74799 0 0 0 0 2 HHIP chr4:145636452 3'AG 145636452 Downstream 64bp
chr4 145636515 145636515 1 + C T SKCM 145636513 + 145636493 145636533 41 GGCAAGAAAAACCACTCTGTCTCGGCACTAGTGGGTCCTGT GGCAAGAAAAACCACTCTGTCTTGGCACTAGTGGGTCCTGT < 41bp 0.730298924592158 0.438429036093133 0.19581634 0.12507197 prediction 0.460597849184317 Functional Loss - HHIP ENSG00000164161 CDS Human protein_coding chr4:145636513 chr4:145636515 synonymous SNV . 0 23 hm5C_associated_SNPs_74799 0 0 0 0 2 HHIP chr4:145636582 5'GT 145636582 Upstream 68bp
chr11 117985972 117985972 1 + G A LUSC 117985969 + 117985949 117985989 41 AGATGATGTGTGCAGGCATCCCGGAAGGGGGTGTGGACACC AGATGATGTGTGCAGGCATCCCGAAAGGGGGTGTGGACACC < 41bp 0.761761735483803 0.531463524108594 0.16120079 0.16198656 prediction 0.460596422750419 Functional Loss - TMPRSS4 ENSG00000137648 CDS Human protein_coding chr11:117985969 chr11:117985972 nonsynonymous SNV 0.643 0 24 hm5C_associated_SNPs_74800 0 0 0 0 1 TMPRSS4 chr11:117985995 5'GT 117985995 Upstream 24bp
chr1 15654895 15654895 1 + G A UCEC 15654892 + 15654872 15654912 41 GAGGAGACCACCGAGAACATCGAGAAGCTGAGGACGTCGCT GAGGAGACCACCGAGAACATCGAAAAGCTGAGGACGTCGCT < 41bp 0.763273597070354 0.532979010809599 0.91986716 0.8346942 prediction 0.460589172521509 Functional Loss - FHAD1 ENSG00000142621 CDS Human protein_coding chr1:15654892 chr1:15654895 synonymous SNV . 0 24 hm5C_associated_SNPs_74804 0 0 0 0 1 FHAD1 chr1:15654925 5'GT 15654925 Upstream 31bp
chr5 135391445 135391445 1 + G T LUAD 135391443 + 135391423 135391463 41 GGGACCCTGTTCACGATGGACCGGGTGCTGACCCCCCCAAT GGGACCCTGTTCACGATGGACCTGGTGCTGACCCCCCCAAT < 41bp 0.730293525723679 0.37301129924831 0.9002203 0.41659984 prediction 0.460587051447358 Functional Loss - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135391443 chr5:135391445 nonsynonymous SNV 0.989 3 23 hm5C_associated_SNPs_74805 0 0 1 0 2 TGFBI chr5:135391369 3'AG 135391369 Downstream 77bp
chr5 135391445 135391445 1 + G T LUAD 135391443 + 135391423 135391463 41 GGGACCCTGTTCACGATGGACCGGGTGCTGACCCCCCCAAT GGGACCCTGTTCACGATGGACCTGGTGCTGACCCCCCCAAT < 41bp 0.730293525723679 0.37301129924831 0.9002203 0.41659984 prediction 0.460587051447358 Functional Loss - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135391443 chr5:135391445 nonsynonymous SNV 0.989 3 23 hm5C_associated_SNPs_74805 0 0 1 0 2 TGFBI chr5:135391505 5'GT 135391505 Upstream 61bp
chr6 41751245 41751245 1 + G A UCEC 41751242 + 41751222 41751262 41 AGAACTCTGGCTGGCCCCACCAAGAAGACAGCCCCAAGCCC AGAACTCTGGCTGGCCCCACCAAAAAGACAGCCCCAAGCCC < 41bp 0.799638396703558 0.56934736465629 0.25389922 0.07369223 prediction 0.460582064094536 Functional Loss - PRICKLE4 ENSG00000124593 CDS Human protein_coding chr6:41751242 chr6:41751245 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_74807 0 0 1 0 2 PRICKLE4 chr6:41751200 3'AG 41751200 Downstream 46bp
chr6 41751245 41751245 1 + G A UCEC 41751242 + 41751222 41751262 41 AGAACTCTGGCTGGCCCCACCAAGAAGACAGCCCCAAGCCC AGAACTCTGGCTGGCCCCACCAAAAAGACAGCCCCAAGCCC < 41bp 0.799638396703558 0.56934736465629 0.25389922 0.07369223 prediction 0.460582064094536 Functional Loss - PRICKLE4 ENSG00000124593 CDS Human protein_coding chr6:41751242 chr6:41751245 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_74807 0 0 1 0 2 PRICKLE4 chr6:41751343 5'GT 41751343 Upstream 99bp
chr22 21237835 21237835 1 + C T CESC 21237833 + 21237813 21237853 41 ACCCACACCTTCGAGCCTATCACCAGAAGATCGACAGCAAC ACCCACACCTTCGAGCCTATCATCAGAAGATCGACAGCAAC < 41bp 0.851003328430183 0.620713946968621 0.17765161 0.14263767 prediction 0.460578762923124 Functional Loss - SNAP29 ENSG00000099940 CDS Human protein_coding chr22:21237833 chr22:21237835 synonymous SNV . 0 23 hm5C_associated_SNPs_74808 0 0 1 0 2 SNAP29 chr22:21237759 3'AG 21237759 Downstream 77bp
chr22 21237835 21237835 1 + C T CESC 21237833 + 21237813 21237853 41 ACCCACACCTTCGAGCCTATCACCAGAAGATCGACAGCAAC ACCCACACCTTCGAGCCTATCATCAGAAGATCGACAGCAAC < 41bp 0.851003328430183 0.620713946968621 0.17765161 0.14263767 prediction 0.460578762923124 Functional Loss - SNAP29 ENSG00000099940 CDS Human protein_coding chr22:21237833 chr22:21237835 synonymous SNV . 0 23 hm5C_associated_SNPs_74808 0 0 1 0 2 SNAP29 chr22:21237857 5'GT 21237857 Upstream 23bp
chr5 50687162 50687162 1 + G A LUAD 50687159 + 50687139 50687179 41 TGGCTGCCAGTCCAGAGAGACACGACGGTGGCTTACAGGCT TGGCTGCCAGTCCAGAGAGACACAACGGTGGCTTACAGGCT < 41bp 0.741672152089941 0.511386167671809 0.17964938 0.11569059 prediction 0.460571968836263 Functional Loss - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50687159 chr5:50687162 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_74809 0 0 0 0 1 ISL1 chr5:50687108 3'AG 50687108 Downstream 55bp
chr10 112340727 112340727 1 + T C COAD 112340726 + 112340706 112340746 41 ATTAAGAGAAGTAGCTGGTACTAGAGTGTATGACGAACGAA ATTAAGAGAAGTAGCTGGTACCAGAGTGTATGACGAACGAA < 41bp 0.769276794921868 0.538993574503406 0.29063076 0.77882385 prediction 0.460566440836923 Functional Loss - SMC3 ENSG00000108055 CDS Human protein_coding chr10:112340726 chr10:112340727 synonymous SNV . 0 22 hm5C_associated_SNPs_74812 0 0 1 0 2 SMC3 chr10:112340662 3'AG 112340662 Downstream 66bp
chr10 112340727 112340727 1 + T C COAD 112340726 + 112340706 112340746 41 ATTAAGAGAAGTAGCTGGTACTAGAGTGTATGACGAACGAA ATTAAGAGAAGTAGCTGGTACCAGAGTGTATGACGAACGAA < 41bp 0.769276794921868 0.538993574503406 0.29063076 0.77882385 prediction 0.460566440836923 Functional Loss - SMC3 ENSG00000108055 CDS Human protein_coding chr10:112340726 chr10:112340727 synonymous SNV . 0 22 hm5C_associated_SNPs_74812 0 0 1 0 2 SMC3 chr10:112340779 5'GT 112340779 Upstream 53bp
chr17 56342180 56342180 1 + G T LGG 56342178 + 56342158 56342198 41 TACAGTGAATCTGTGGATCCCAGAATTTCCAATGTCTTCAC TACAGTGAATCTGTGGATCCCATAATTTCCAATGTCTTCAC < 41bp 0.730277673177955 0.379070508475667 0.19650248 0.12697515 prediction 0.46055534635591 Functional Loss - LPO ENSG00000167419 CDS Human protein_coding chr17:56342178 chr17:56342180 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_74815 0 0 0 0 1 LPO chr17:56342083 3'AG 56342083 Downstream 98bp
chr19 50926276 50926276 1 + G A STAD 50926273 + 50926253 50926293 41 CCTGGCCTCCCTGCATACCCCACGGAGAACTTCGCTAGCCA CCTGGCCTCCCTGCATACCCCACAGAGAACTTCGCTAGCCA < 41bp 0.774147650889536 0.543872889804882 0.8988272 0.19153461 prediction 0.460549522169308 Functional Loss - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50926273 chr19:50926276 nonsynonymous SNV 0.308 0 24 hm5C_associated_SNPs_74817 0 0 0 0 1 SPIB chr19:50926294 5'GT 50926294 Upstream 19bp
chr10 38654418 38654418 1 + G A GBM 38654415 + 38654395 38654435 41 GACAATCCATCTCAGCTCATCTGGACATCATCTCGCAATGC GACAATCCATCTCAGCTCATCTGAACATCATCTCGCAATGC < 41bp 0.735809783972309 0.505537640728503 0.061829656 0.025867075 prediction 0.460544286487612 Functional Loss - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38654415 chr10:38654418 . . 0 24 hm5C_associated_SNPs_74819 0 0 1 3 1 HSD17B7P2 chr10:38654362 3'AG 38654362 Downstream 57bp
chr7 128323085 128323085 1 + C T BLCA 128323083 + 128323063 128323103 41 GATACCCTCTCCAGTGGCATCTCCAATCAATTTGAATATAC GATACCCTCTCCAGTGGCATCTTCAATCAATTTGAATATAC < 41bp 0.730269978547272 0.439434985773005 0.9740226 0.64972776 prediction 0.460539957094544 Functional Loss - FAM71F2 ENSG00000205085 CDS Human protein_coding chr7:128323083 chr7:128323085 nonsynonymous SNV 0.095 1 23 hm5C_associated_SNPs_74821 0 0 0 0 1 FAM71F2 chr7:128323018 3'AG 128323018 Downstream 68bp
chr15 41102329 41102329 1 + A C LUAD 41102328 + 41102308 41102348 41 CTGCCCTAAAGGATGAACGTCAGGGTTCCATCCCTTCCACC CTGCCCTAAAGGATGAACGTCCGGGTTCCATCCCTTCCACC < 41bp 0.81289249625529 0.58262353251648 0.92605186 0.91591007 prediction 0.460537927477619 Functional Loss - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41102328 chr15:41102329 nonsynonymous SNV 0.146 0 22 hm5C_associated_SNPs_74822 0 0 0 0 1 ZFYVE19 chr15:41102414 5'GT 41102414 Upstream 86bp
chr11 34118200 34118200 1 + G C COAD 34118196 + 34118176 34118216 41 GAGGCTTGATGAATGGATACCGGGGCCCTGCCAATGGATTC GAGGCTTGATGAATGGATACCGGGCCCCTGCCAATGGATTC < 41bp 0.730268745269579 0.444371093961021 0.8377975 0.15022331 prediction 0.460537490539157 Functional Loss - CAPRIN1 ENSG00000135387 CDS Human protein_coding chr11:34118196 chr11:34118200 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_74823 0 0 1 0 1 CAPRIN1 chr11:34118220 5'GT 34118220 Upstream 21bp
chr2 215279274 215279274 1 + C T COAD 215279272 + 215279252 215279292 41 TAAAAAACTTCTGTGAATATCACGGGAAAAATTACAAAATC TAAAAAACTTCTGTGAATATCATGGGAAAAATTACAAAATC < 41bp 0.797753849079701 0.567487047519317 0.8728465 0.8697388 prediction 0.460533603120769 Functional Loss - VWC2L ENSG00000174453 CDS Human protein_coding chr2:215279272 chr2:215279274 synonymous SNV . 0 23 hm5C_associated_SNPs_74824 0 0 0 0 1 VWC2L chr2:215279307 5'GT 215279307 Upstream 34bp
chr2 113956357 113956357 1 + T C UCEC 113956356 + 113956336 113956376 41 TCCTGGATCGCGCGCATCAACTTGGCTGCGGCCACGCACTC TCCTGGATCGCGCGCATCAACCTGGCTGCGGCCACGCACTC < 41bp 0.784458447016109 0.554192698433817 0.51940113 0.6376216 prediction 0.460531497164583 Functional Loss - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113956356 chr2:113956357 synonymous SNV . 0 22 hm5C_associated_SNPs_74827 0 0 0 0 1 PSD4 chr2:113956317 3'AG 113956317 Downstream 41bp
chr14 56755201 56755201 1 + C T UCEC 56755199 + 56755179 56755219 41 ATCGACTTCGTTGTCACAGACACGATTTCTGGCAGCCAGAA ATCGACTTCGTTGTCACAGACATGATTTCTGGCAGCCAGAA < 41bp 0.855783446886709 0.625517993626113 0.02406913 0.06326741 prediction 0.460530906521191 Functional Loss - PELI2 ENSG00000139946 CDS Human protein_coding chr14:56755199 chr14:56755201 nonsynonymous SNV 0.504 4 23 hm5C_associated_SNPs_74828 0 0 1 0 1 PELI2 chr14:56755155 3'AG 56755155 Downstream 47bp
chr1 158151329 158151329 1 + G A SKCM 158151326 + 158151306 158151346 41 GACGCGCACCGACGGCTTGGCGTGGCTGGGGGAGCTGCAGA GACGCGCACCGACGGCTTGGCGTAGCTGGGGGAGCTGCAGA < 41bp 0.787298092967103 0.55703550248686 0.847062 0.6427072 prediction 0.460525180960485 Functional Loss - CD1D ENSG00000158473 CDS Human protein_coding chr1:158151326 chr1:158151329 stopgain 0.589 0 24 hm5C_associated_SNPs_74829 0 0 0 0 2 CD1D chr1:158151245 3'AG 158151245 Downstream 85bp
chr1 158151329 158151329 1 + G A SKCM 158151326 + 158151306 158151346 41 GACGCGCACCGACGGCTTGGCGTGGCTGGGGGAGCTGCAGA GACGCGCACCGACGGCTTGGCGTAGCTGGGGGAGCTGCAGA < 41bp 0.787298092967103 0.55703550248686 0.847062 0.6427072 prediction 0.460525180960485 Functional Loss - CD1D ENSG00000158473 CDS Human protein_coding chr1:158151326 chr1:158151329 stopgain 0.589 0 24 hm5C_associated_SNPs_74829 0 0 0 0 2 CD1D chr1:158151280 3'AG 158151280 Downstream 50bp
chr9 140136391 140136391 1 + C T UCEC 140136389 + 140136369 140136409 41 AGTACGTGCCCCGCGCCGTGCTCGTGGATCTGGAGCCCGGC AGTACGTGCCCCGCGCCGTGCTTGTGGATCTGGAGCCCGGC < 41bp 0.751240844220321 0.520982426353182 0.11007592 0.08550376 prediction 0.460516835734278 Functional Loss - TUBB4B ENSG00000188229 CDS Human protein_coding chr9:140136389 chr9:140136391 synonymous SNV . 0 23 hm5C_associated_SNPs_74830 0 0 1 0 2 TUBB4B chr9:140136363 3'AG 140136363 Downstream 29bp
chr9 140136391 140136391 1 + C T UCEC 140136389 + 140136369 140136409 41 AGTACGTGCCCCGCGCCGTGCTCGTGGATCTGGAGCCCGGC AGTACGTGCCCCGCGCCGTGCTTGTGGATCTGGAGCCCGGC < 41bp 0.751240844220321 0.520982426353182 0.11007592 0.08550376 prediction 0.460516835734278 Functional Loss - TUBB4B ENSG00000188229 CDS Human protein_coding chr9:140136389 chr9:140136391 synonymous SNV . 0 23 hm5C_associated_SNPs_74830 0 0 1 0 2 TUBB4B chr9:140136473 5'GT 140136473 Upstream 83bp
chr8 10555178 10555178 1 + C T SKCM 10555176 + 10555156 10555196 41 GATTACCGGGGCCATTTCAACACCACCCACCTGCTGGCCCT GATTACCGGGGCCATTTCAACATCACCCACCTGCTGGCCCT < 41bp 0.828721621036288 0.598466309148483 0.16109395 0.093437076 prediction 0.460510623775609 Functional Loss - C8orf74 ENSG00000171060 CDS Human protein_coding chr8:10555176 chr8:10555178 nonsynonymous SNV 0.409 0 23 hm5C_associated_SNPs_74831 0 0 0 2 1 C8orf74 chr8:10555109 3'AG 10555109 Downstream 70bp
chr8 68864725 68864725 1 + G A rs114174763 68864722 + 68864702 68864742 41 GTGTGCGTGCTCAGCGAGCTCCAGAAGACCGAGCGGGACTA GTGTGCGTGCTCAGCGAGCTCCAAAAGACCGAGCGGGACTA < 41bp 0.748318044914189 0.518064557859927 0.6786674 0.4390907 prediction 0.460506974108525 Functional Loss - PREX2 ENSG00000046889 CDS Human protein_coding chr8:68864722 chr8:68864725 synonymous SNV . 0 24 hm5C_associated_SNPs_74832 0 0 0 0 1 PREX2 chr8:68864770 5'GT 68864770 Upstream 46bp
chr16 57732924 57732924 1 + G A LUSC 57732921 + 57732901 57732941 41 CTCTTCCTGCACCCCCTGAACGAGTGTGAAGTGCCCGTAAG CTCTTCCTGCACCCCCTGAACGAATGTGAAGTGCCCGTAAG < 41bp 0.791763186899588 0.561509703278398 0.70704585 0.23976499 prediction 0.46050696724238 Functional Loss - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57732921 chr16:57732924 synonymous SNV . 0 24 hm5C_associated_SNPs_74833 0 0 0 0 1 DRC7 chr16:57732936 5'GT 57732936 Upstream 13bp
chr5 55076931 55076931 1 + T C rs149297913 55076930 + 55076910 55076950 41 AGACGAATGTATGCAGCGCACTGGTGGCCTTTTTGGTTCTA AGACGAATGTATGCAGCGCACCGGTGGCCTTTTTGGTTCTA < 41bp 0.730252927036107 0.494987950473931 0.12760958 0.17076969 prediction 0.460505854072213 Functional Loss - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55076930 chr5:55076931 synonymous SNV . 0 22 hm5C_associated_SNPs_74834 0 0 0 0 2 DDX4 chr5:55076894 3'AG 55076894 Downstream 38bp
chr5 55076931 55076931 1 + T C rs149297913 55076930 + 55076910 55076950 41 AGACGAATGTATGCAGCGCACTGGTGGCCTTTTTGGTTCTA AGACGAATGTATGCAGCGCACCGGTGGCCTTTTTGGTTCTA < 41bp 0.730252927036107 0.494987950473931 0.12760958 0.17076969 prediction 0.460505854072213 Functional Loss - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55076930 chr5:55076931 synonymous SNV . 0 22 hm5C_associated_SNPs_74834 0 0 0 0 2 DDX4 chr5:55076974 5'GT 55076974 Upstream 44bp
chr16 77769784 77769784 1 + G A GBM 77769781 + 77769761 77769801 41 GGTAAGCGTGACCCTACAGACATGGATGATGCAGCCACAGC GGTAAGCGTGACCCTACAGACATAGATGATGCAGCCACAGC < 41bp 0.7346211716156 0.504375066156246 0.5226964 0.21718034 prediction 0.46049221091871 Functional Loss - NUDT7 ENSG00000140876 CDS Human protein_coding chr16:77769781 chr16:77769784 nonsynonymous SNV 0.013 0 24 hm5C_associated_SNPs_74837 0 0 0 0 2 NUDT7 chr16:77769725 3'AG 77769725 Downstream 60bp
chr16 77769784 77769784 1 + G A GBM 77769781 + 77769761 77769801 41 GGTAAGCGTGACCCTACAGACATGGATGATGCAGCCACAGC GGTAAGCGTGACCCTACAGACATAGATGATGCAGCCACAGC < 41bp 0.7346211716156 0.504375066156246 0.5226964 0.21718034 prediction 0.46049221091871 Functional Loss - NUDT7 ENSG00000140876 CDS Human protein_coding chr16:77769781 chr16:77769784 nonsynonymous SNV 0.013 0 24 hm5C_associated_SNPs_74837 0 0 0 0 2 NUDT7 chr16:77769883 5'GT 77769883 Upstream 100bp
chr20 62374241 62374241 1 + C T CESC 62374239 + 62374219 62374259 41 ACCCCCCGCACAGGAAGCCCCGCGGCGACGCGAAGAAGTGC ACCCCCCGCACAGGAAGCCCCGTGGCGACGCGAAGAAGTGC < 41bp 0.778008351164166 0.547771750158752 0.5249764 0.32378986 prediction 0.460473202010828 Functional Loss - SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62374239 chr20:62374241 synonymous SNV . 0 23 hm5C_associated_SNPs_74845 0 0 1 0 1 SLC2A4RG chr20:62374232 3'AG 62374232 Downstream 10bp
chr11 117864084 117864084 1 + G A SKCM 117864081 + 117864061 117864101 41 AAAGCATCTTCAGTCACTTCCGAGAGTATGAGATTGCCATT AAAGCATCTTCAGTCACTTCCGAAAGTATGAGATTGCCATT < 41bp 0.776317176081234 0.546084823701595 0.9031377 0.6323968 prediction 0.460464704759277 Functional Loss - IL10RA ENSG00000110324 CDS Human protein_coding chr11:117864081 chr11:117864084 nonsynonymous SNV 0.041 0 24 hm5C_associated_SNPs_74848 0 0 0 0 1 IL10RA chr11:117864125 5'GT 117864125 Upstream 42bp
chr20 31790438 31790438 1 + C T rs6059156 31790436 + 31790416 31790456 41 TTGGGAACTGCAGGCTCTTGCCCGAGGCTATTTGGATCCAA TTGGGAACTGCAGGCTCTTGCCTGAGGCTATTTGGATCCAA < 41bp 0.736315420295411 0.5060841447514 0.8893976 0.8822399 prediction 0.460462551088024 Functional Loss - BPIFA4P ENSG00000183566 ncRNA_exonic Human transcribed_unitary_pseudogene chr20:31790436 chr20:31790438 . . 0 23 hm5C_associated_SNPs_74849 0 0 0 0 1 BPIFA4P chr20:31790467 5'GT 31790467 Upstream 30bp
chr4 55589852 55589852 1 + G A UCEC 55589849 + 55589829 55589869 41 AATAGATTGGTATTTTTGTCCAGGAACTGAGCAGAGGTGAG AATAGATTGGTATTTTTGTCCAGAAACTGAGCAGAGGTGAG < 41bp 0.735536839720714 0.505320383394125 0.8306673 0.7106005 prediction 0.460432912653178 Functional Loss - KIT ENSG00000157404 CDS Human protein_coding chr4:55589849 chr4:55589852 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_74853 0 0 1 0 1 KIT chr4:55589864 5'GT 55589864 Upstream 13bp
chr15 81598849 81598849 1 + C T BRCA 81598847 + 81598827 81598867 41 AAGGAGGGAAGGGCTCCCTACACGGAGACAAGCCTCTCACC AAGGAGGGAAGGGCTCCCTACATGGAGACAAGCCTCTCACC < 41bp 0.730214619642412 0.472054276004046 0.7381598 0.5900506 prediction 0.460429239284825 Functional Loss - IL16 ENSG00000172349 CDS Human protein_coding chr15:81598847 chr15:81598849 synonymous SNV 0.326 0 23 hm5C_associated_SNPs_74855 0 0 0 0 2 IL16 chr15:81598761 3'AG 81598761 Downstream 89bp
chr15 81598849 81598849 1 + C T BRCA 81598847 + 81598827 81598867 41 AAGGAGGGAAGGGCTCCCTACACGGAGACAAGCCTCTCACC AAGGAGGGAAGGGCTCCCTACATGGAGACAAGCCTCTCACC < 41bp 0.730214619642412 0.472054276004046 0.7381598 0.5900506 prediction 0.460429239284825 Functional Loss - IL16 ENSG00000172349 CDS Human protein_coding chr15:81598847 chr15:81598849 synonymous SNV 0.326 0 23 hm5C_associated_SNPs_74855 0 0 0 0 2 IL16 chr15:81598764 3'AG 81598764 Downstream 86bp
chr20 57899430 57899430 1 + C T BRCA 57899428 + 57899408 57899448 41 GCAAGCAGGCTTTAGACCTCCACCATCCAAAGCTCATGCCC GCAAGCAGGCTTTAGACCTCCATCATCCAAAGCTCATGCCC < 41bp 0.813355079738611 0.58314490408036 0.16101432 0.12103668 prediction 0.460420351316503 Functional Loss - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57899428 chr20:57899430 synonymous SNV . 0 23 hm5C_associated_SNPs_74856 0 0 0 0 2 EDN3 chr20:57899382 3'AG 57899382 Downstream 49bp
chr20 57899430 57899430 1 + C T BRCA 57899428 + 57899408 57899448 41 GCAAGCAGGCTTTAGACCTCCACCATCCAAAGCTCATGCCC GCAAGCAGGCTTTAGACCTCCATCATCCAAAGCTCATGCCC < 41bp 0.813355079738611 0.58314490408036 0.16101432 0.12103668 prediction 0.460420351316503 Functional Loss - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57899428 chr20:57899430 synonymous SNV . 0 23 hm5C_associated_SNPs_74856 0 0 0 0 2 EDN3 chr20:57899386 3'AG 57899386 Downstream 45bp
chr3 156660454 156660454 1 + G T UCEC 156660452 + 156660432 156660472 41 AGATTCGGACATCTAGACAACAGGAAGTAAACTTGCAAACC AGATTCGGACATCTAGACAACATGAAGTAAACTTGCAAACC < 41bp 0.73020799939306 0.401379373052513 0.8916406 0.24239197 prediction 0.46041599878612 Functional Loss - LEKR1 ENSG00000197980 CDS Human protein_coding chr3:156660452 chr3:156660454 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_74858 0 0 0 0 1 LEKR1 chr3:156660503 5'GT 156660503 Upstream 50bp
chr11 563475 563475 1 + G A UCEC 563472 + 563452 563492 41 TGCTGGTGCCCAGCCTAGGCCCCGAGGGTATGTCTGTGCCC TGCTGGTGCCCAGCCTAGGCCCCAAGGGTATGTCTGTGCCC < 41bp 0.776991311909204 0.546783978207089 0.18829757 0.06486225 prediction 0.460414667404229 Functional Loss - RASSF7 ENSG00000099849 CDS Human protein_coding chr11:563472 chr11:563475 nonsynonymous SNV 0.040 1 24 hm5C_associated_SNPs_74859 0 0 1 0 1 RASSF7 chr11:563396 3'AG 563396 Downstream 80bp
chr3 49052346 49052346 1 + C T STAD 49052344 + 49052324 49052364 41 CCACCCGTGAGGGCCACCATCTCGTGGCCAGTGGCAGTGAA CCACCCGTGAGGGCCACCATCTTGTGGCCAGTGGCAGTGAA < 41bp 0.730205664333453 0.459992443313415 0.15272409 0.09637776 prediction 0.460411328666906 Functional Loss - WDR6 ENSG00000178252 CDS Human protein_coding chr3:49052344 chr3:49052346 synonymous SNV . 0 23 hm5C_associated_SNPs_74860 0 0 1 0 1 WDR6 chr3:49052258 3'AG 49052258 Downstream 89bp
chr11 64938924 64938924 1 + C T SKCM 64938922 + 64938902 64938942 41 AAGGTGGGGGCAATGGGTTCCTCCGTTTTCGCCAGCACCAG AAGGTGGGGGCAATGGGTTCCTTCGTTTTCGCCAGCACCAG < 41bp 0.807103989883282 0.576899923827718 0.1620121 0.10705584 prediction 0.460408132111129 Functional Loss - SPDYC ENSG00000204710 CDS Human protein_coding chr11:64938922 chr11:64938924 synonymous SNV . 0 23 hm5C_associated_SNPs_74863 0 0 1 0 1 SPDYC chr11:64938970 5'GT 64938970 Upstream 47bp
chr1 149755777 149755777 1 + G T UCEC 149755775 + 149755755 149755795 41 CAGGTGCCAGAGAGGTCTCTCAGGGCGAAGTGACCCCATAC CAGGTGCCAGAGAGGTCTCTCATGGCGAAGTGACCCCATAC < 41bp 0.902442095107141 0.672239828932922 0.9470671 0.9116808 prediction 0.460404532348438 Functional Loss - FCGR1A ENSG00000150337 CDS Human protein_coding chr1:149755775 chr1:149755777 nonsynonymous SNV 0.256 1 23 hm5C_associated_SNPs_74867 0 0 0 2 1 FCGR1A chr1:149755813 5'GT 149755813 Upstream 37bp
chr12 104732944 104732944 1 + G A UCEC 104732941 + 104732921 104732961 41 GTGTTGTGGGCTTTCACGTACTGGGTCCAAATGCTGGAGAA GTGTTGTGGGCTTTCACGTACTGAGTCCAAATGCTGGAGAA < 41bp 0.734271534335044 0.504070585039083 0.40489766 0.30400223 prediction 0.460401898591922 Functional Loss - TXNRD1 ENSG00000198431 CDS Human protein_coding chr12:104732941 chr12:104732944 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_74868 0 0 1 1 1 TXNRD1 chr12:104732917 3'AG 104732917 Downstream 28bp
chrX 69671773 69671773 1 + G A UCEC 69671770 + 69671750 69671790 41 ATAATTCCAGCCTGGGTTATCTCGGGGCTGTGGAGAGCAAG ATAATTCCAGCCTGGGTTATCTCAGGGCTGTGGAGAGCAAG < 41bp 0.766857394628986 0.536657881820372 0.68665993 0.18922982 prediction 0.460399025617228 Functional Loss - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69671770 chrX:69671773 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_74869 0 0 0 0 1 DLG3 chrX:69671717 3'AG 69671717 Downstream 57bp
chr1 43777368 43777368 1 + C T STAD 43777366 + 43777346 43777386 41 CCCCGTGCCCCTGGCTGCACCTCGGCTCCTGACCAAGCAGA CCCCGTGCCCCTGGCTGCACCTTGGCTCCTGACCAAGCAGA < 41bp 0.730199147901717 0.460371749408194 0.33192825 0.22543722 prediction 0.460398295803433 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43777366 chr1:43777368 nonsynonymous SNV 0.987 2 23 hm5C_associated_SNPs_74870 0 0 0 0 1 TIE1 chr1:43777342 3'AG 43777342 Downstream 27bp
chr1 43777369 43777369 1 + G A STAD 43777366 + 43777346 43777386 41 CCCCGTGCCCCTGGCTGCACCTCGGCTCCTGACCAAGCAGA CCCCGTGCCCCTGGCTGCACCTCAGCTCCTGACCAAGCAGA < 41bp 0.730199147901717 0.486929716081048 0.33192825 0.2487579 prediction 0.460398295803433 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43777366 chr1:43777369 nonsynonymous SNV 0.985 0 24 hm5C_associated_SNPs_74871 0 0 0 0 1 TIE1 chr1:43777342 3'AG 43777342 Downstream 28bp
chr2 47703619 47703619 1 + T C KIRC 47703618 + 47703598 47703638 41 GCAGAAGTGTCCATTGTGGACTGCATCTTAGCCCGAGTAGG GCAGAAGTGTCCATTGTGGACCGCATCTTAGCCCGAGTAGG < 41bp 0.730196202274435 0.470997363729682 0.05505082 0.061941057 prediction 0.46039240454887 Functional Loss - MSH2 ENSG00000095002 CDS Human protein_coding chr2:47703618 chr2:47703619 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_74873 0 0 1 0 1 MSH2 chr2:47703710 5'GT 47703710 Upstream 92bp
chr4 74315828 74315828 1 + G A LUSC 74315825 + 74315805 74315845 41 GCTGCGGCCTCTTCCAGAAACTAGGAGAATATTACTTACAA GCTGCGGCCTCTTCCAGAAACTAAGAGAATATTACTTACAA < 41bp 0.736492729924434 0.506298505886668 0.7918403 0.8642136 prediction 0.46038844807553 Functional Loss - AFP ENSG00000081051 CDS Human protein_coding chr4:74315825 chr4:74315828 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_74874 0 0 0 0 2 AFP chr4:74315753 3'AG 74315753 Downstream 76bp
chr4 74315828 74315828 1 + G A LUSC 74315825 + 74315805 74315845 41 GCTGCGGCCTCTTCCAGAAACTAGGAGAATATTACTTACAA GCTGCGGCCTCTTCCAGAAACTAAGAGAATATTACTTACAA < 41bp 0.736492729924434 0.506298505886668 0.7918403 0.8642136 prediction 0.46038844807553 Functional Loss - AFP ENSG00000081051 CDS Human protein_coding chr4:74315825 chr4:74315828 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_74874 0 0 0 0 2 AFP chr4:74315850 5'GT 74315850 Upstream 23bp
chrX 69497577 69497577 1 + C T rs150523832 69497575 + 69497555 69497595 41 TCCTGCTTTAGGTTCACTACCACGGAGAACCCATCTCTGTC TCCTGCTTTAGGTTCACTACCATGGAGAACCCATCTCTGTC < 41bp 0.823645781591977 0.59345187012782 0.35413098 0.47238994 prediction 0.460387822928314 Functional Loss - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69497575 chrX:69497577 synonymous SNV . 0 23 hm5C_associated_SNPs_74875 0 0 0 0 2 ARR3 chrX:69497566 3'AG 69497566 Downstream 12bp
chrX 69497577 69497577 1 + C T rs150523832 69497575 + 69497555 69497595 41 TCCTGCTTTAGGTTCACTACCACGGAGAACCCATCTCTGTC TCCTGCTTTAGGTTCACTACCATGGAGAACCCATCTCTGTC < 41bp 0.823645781591977 0.59345187012782 0.35413098 0.47238994 prediction 0.460387822928314 Functional Loss - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69497575 chrX:69497577 synonymous SNV . 0 23 hm5C_associated_SNPs_74875 0 0 0 0 2 ARR3 chrX:69497650 5'GT 69497650 Upstream 74bp
chrX 77380482 77380482 1 + C T rs183087139 77380480 + 77380460 77380500 41 ATTTGAATGGGAAGCTTTTGCCCGGGGAACCAAAGCTCTCA ATTTGAATGGGAAGCTTTTGCCTGGGGAACCAAAGCTCTCA < 41bp 0.8181821124708 0.587990919708707 0.85694313 0.5750361 prediction 0.460382385524185 Functional Loss - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77380480 chrX:77380482 nonsynonymous SNV 0.604 2 23 hm5C_associated_SNPs_74877 0 0 1 0 1 PGK1 chrX:77380548 5'GT 77380548 Upstream 67bp
chr10 112361903 112361903 1 + G T HNSC 112361901 + 112361881 112361921 41 TGATGAATGTACTTGAACTTCGGAAATATGAAGCTATTCAG TGATGAATGTACTTGAACTTCGTAAATATGAAGCTATTCAG < 41bp 0.730189150324964 0.416630417731173 0.03211668 0.028293073 prediction 0.460378300649928 Functional Loss - SMC3 ENSG00000108055 CDS Human protein_coding chr10:112361901 chr10:112361903 synonymous SNV . 0 23 hm5C_associated_SNPs_74879 0 0 1 0 1 SMC3 chr10:112361936 5'GT 112361936 Upstream 34bp
chr12 108082460 108082460 1 + G A CESC 108082457 + 108082437 108082477 41 AGAAGATGGCATGCAGAGTGCACGCACCCAGGCACGCCCAA AGAAGATGGCATGCAGAGTGCACACACCCAGGCACGCCCAA < 41bp 0.785011619939347 0.554833821233356 0.030160427 0.018037915 prediction 0.460355597411982 Functional Loss - PWP1 ENSG00000136045 CDS Human protein_coding chr12:108082457 chr12:108082460 nonsynonymous SNV 0.948 0 24 hm5C_associated_SNPs_74883 0 0 1 0 1 PWP1 chr12:108082392 3'AG 108082392 Downstream 69bp
chr1 241714342 241714342 1 + C T CESC 241714340 + 241714320 241714360 41 AATTCCCTATGGGACAAAGTCTCAGGTAGGTTTACCCCGGA AATTCCCTATGGGACAAAGTCTTAGGTAGGTTTACCCCGGA < 41bp 0.730176182793226 0.449541535951721 0.03805372 0.04050857 prediction 0.460352365586452 Functional Loss - KMO ENSG00000117009 CDS Human protein_coding chr1:241714340 chr1:241714342 stopgain 0.935 1 23 hm5C_associated_SNPs_74885 0 0 0 0 2 KMO chr1:241714255 3'AG 241714255 Downstream 88bp
chr1 241714342 241714342 1 + C T CESC 241714340 + 241714320 241714360 41 AATTCCCTATGGGACAAAGTCTCAGGTAGGTTTACCCCGGA AATTCCCTATGGGACAAAGTCTTAGGTAGGTTTACCCCGGA < 41bp 0.730176182793226 0.449541535951721 0.03805372 0.04050857 prediction 0.460352365586452 Functional Loss - KMO ENSG00000117009 CDS Human protein_coding chr1:241714340 chr1:241714342 stopgain 0.935 1 23 hm5C_associated_SNPs_74885 0 0 0 0 2 KMO chr1:241714344 5'GT 241714344 Upstream 3bp
chr7 107302103 107302103 1 + G T rs111033423 107302101 + 107302081 107302121 41 CAGGTCATGGCAGCGCCAGGCGGCAGGTCGGAGCCGCCGCA CAGGTCATGGCAGCGCCAGGCGTCAGGTCGGAGCCGCCGCA < 41bp 0.905172247483729 0.67499872800389 0.88933086 0.5390629 prediction 0.460347038959678 Functional Loss - SLC26A4 ENSG00000091137 CDS Human antisense chr7:107302101 chr7:107302103 nonsynonymous SNV 0.782 1 23 hm5C_associated_SNPs_74888 2 0 0 0 1 SLC26A4-AS1 chr7:107302084 3'AG 107302084 Downstream 20bp
chr6 74072843 74072843 1 + C T STAD 74072841 + 74072821 74072861 41 GGGGCGGAGAACGCATCCCGCACGTCCAGGGTATGTCCCAA GGGGCGGAGAACGCATCCCGCATGTCCAGGGTATGTCCCAA < 41bp 0.790186799479427 0.560014041338476 0.026547402 0.10201597 prediction 0.460345516281901 Functional Loss - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74072841 chr6:74072843 synonymous SNV . 0 23 hm5C_associated_SNPs_74889 0 0 0 0 1 KHDC3L chr6:74072818 3'AG 74072818 Downstream 26bp
chr11 20676294 20676294 1 + G A SKCM 20676291 + 20676271 20676311 41 GTGTGCTCGCCACAGCCGGACTGGGGCCCATTCTTAGCTCA GTGTGCTCGCCACAGCCGGACTGAGGCCCATTCTTAGCTCA < 41bp 0.750983581316968 0.520813365022274 0.7868525 0.3949894 prediction 0.460340432589386 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20676291 chr11:20676294 stopgain 1.000 1 24 hm5C_associated_SNPs_74890 0 0 0 0 1 SLC6A5 chr11:20676259 3'AG 20676259 Downstream 36bp
chr9 120470925 120470925 1 + G A SKCM 120470922 + 120470902 120470942 41 TCCCCTTCTCAACCAAGAACCTGGACCTGAGCTTTAATCCC TCCCCTTCTCAACCAAGAACCTGAACCTGAGCTTTAATCCC < 41bp 0.757994966035313 0.527836125674471 0.25075197 0.11371514 prediction 0.460317680721684 Functional Loss - TLR4 ENSG00000136869 CDS Human protein_coding chr9:120470922 chr9:120470925 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_74893 0 0 0 0 2 TLR4 chr9:120470841 3'AG 120470841 Downstream 85bp
chr9 120470925 120470925 1 + G A SKCM 120470922 + 120470902 120470942 41 TCCCCTTCTCAACCAAGAACCTGGACCTGAGCTTTAATCCC TCCCCTTCTCAACCAAGAACCTGAACCTGAGCTTTAATCCC < 41bp 0.757994966035313 0.527836125674471 0.25075197 0.11371514 prediction 0.460317680721684 Functional Loss - TLR4 ENSG00000136869 CDS Human protein_coding chr9:120470922 chr9:120470925 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_74893 0 0 0 0 2 TLR4 chr9:120471007 5'GT 120471007 Upstream 83bp
chr5 5262858 5262858 1 + G A UCEC 5262855 + 5262835 5262875 41 AATCCCAAGACACGACCTGTCACGGGGCTGGTGCCTTGCAA AATCCCAAGACACGACCTGTCACAGGGCTGGTGCCTTGCAA < 41bp 0.767952976917611 0.537801899164913 0.56778735 0.31561515 prediction 0.460302155505396 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5262855 chr5:5262858 synonymous SNV . 0 24 hm5C_associated_SNPs_74897 0 0 0 0 2 ADAMTS16 chr5:5262770 3'AG 5262770 Downstream 89bp
chr5 5262858 5262858 1 + G A UCEC 5262855 + 5262835 5262875 41 AATCCCAAGACACGACCTGTCACGGGGCTGGTGCCTTGCAA AATCCCAAGACACGACCTGTCACAGGGCTGGTGCCTTGCAA < 41bp 0.767952976917611 0.537801899164913 0.56778735 0.31561515 prediction 0.460302155505396 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5262855 chr5:5262858 synonymous SNV . 0 24 hm5C_associated_SNPs_74897 0 0 0 0 2 ADAMTS16 chr5:5262896 5'GT 5262896 Upstream 39bp
chr8 145161326 145161326 1 + G A COAD 145161323 + 145161303 145161343 41 CTGAAACCACAGCTGTGGAACGCGGTGGACGAGGAGATCTG CTGAAACCACAGCTGTGGAACGCAGTGGACGAGGAGATCTG < 41bp 0.764866510182672 0.534723524494801 0.6430103 0.21110743 prediction 0.460285971375742 Functional Loss - MAF1 ENSG00000179632 CDS Human protein_coding chr8:145161323 chr8:145161326 synonymous SNV . 0 24 hm5C_associated_SNPs_74901 0 0 1 0 2 MAF1 chr8:145161246 3'AG 145161246 Downstream 81bp
chr8 145161326 145161326 1 + G A COAD 145161323 + 145161303 145161343 41 CTGAAACCACAGCTGTGGAACGCGGTGGACGAGGAGATCTG CTGAAACCACAGCTGTGGAACGCAGTGGACGAGGAGATCTG < 41bp 0.764866510182672 0.534723524494801 0.6430103 0.21110743 prediction 0.460285971375742 Functional Loss - MAF1 ENSG00000179632 CDS Human protein_coding chr8:145161323 chr8:145161326 synonymous SNV . 0 24 hm5C_associated_SNPs_74901 0 0 1 0 2 MAF1 chr8:145161367 5'GT 145161367 Upstream 42bp
chr19 50939937 50939937 1 + G C BLCA 50939936 + 50939916 50939956 41 GACCGTGGGTATTACCGCCTCGAGGTCAAAGCCAAGGACAC GACCGTGGGTATTACCGCCTCCAGGTCAAAGCCAAGGACAC < 41bp 0.730141178420039 0.405423911514697 0.4234497 0.20990577 prediction 0.460282356840077 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50939936 chr19:50939937 nonsynonymous SNV 0.966 3 22 hm5C_associated_SNPs_74903 0 0 0 0 1 MYBPC2 chr19:50939874 3'AG 50939874 Downstream 64bp
chr11 57569254 57569254 1 + T C PRAD 57569253 + 57569233 57569273 41 GTGCCATCGGATCAATACTACTGGGCTCCTTTGGCCCAGCA GTGCCATCGGATCAATACTACCGGGCTCCTTTGGCCCAGCA < 41bp 0.759994973834691 0.529855733201666 0.38753346 0.30470306 prediction 0.460278481266051 Functional Loss - CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57569253 chr11:57569254 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_74904 0 0 1 0 1 CTNND1 chr11:57569205 3'AG 57569205 Downstream 50bp
chr14 100795794 100795794 1 + G A SKCM 100795791 + 100795771 100795811 41 ACGTGATCAAGTCGAGACTGCAGGCAGACGGGCAGGGCCAG ACGTGATCAAGTCGAGACTGCAGACAGACGGGCAGGGCCAG < 41bp 0.730132680675909 0.489710073925726 0.50844675 0.30952123 prediction 0.460265361351818 Functional Loss - SLC25A47 ENSG00000140107 CDS Human protein_coding chr14:100795791 chr14:100795794 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_74909 0 0 0 0 1 SLC25A47 chr14:100795702 3'AG 100795702 Downstream 93bp
chr3 133489414 133489414 1 + G T LUAD 133489411 + 133489391 133489431 41 CCAGACTGTCCCACAGAACACTGGGGGTAAGTGCACCTGCT CCAGACTGTCCCACAGAACACTGTGGGTAAGTGCACCTGCT < 41bp 0.730128669171739 0.333413251533303 0.9360929 0.8038244 prediction 0.460257338343479 Functional Loss - TF ENSG00000091513 CDS Human protein_coding chr3:133489411 chr3:133489414 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_74912 0 0 1 0 2 TF chr3:133489352 3'AG 133489352 Downstream 63bp
chr3 133489414 133489414 1 + G T LUAD 133489411 + 133489391 133489431 41 CCAGACTGTCCCACAGAACACTGGGGGTAAGTGCACCTGCT CCAGACTGTCCCACAGAACACTGTGGGTAAGTGCACCTGCT < 41bp 0.730128669171739 0.333413251533303 0.9360929 0.8038244 prediction 0.460257338343479 Functional Loss - TF ENSG00000091513 CDS Human protein_coding chr3:133489411 chr3:133489414 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_74912 0 0 1 0 2 TF chr3:133489416 5'GT 133489416 Upstream 3bp
chr17 78399335 78399335 1 + C T SKCM 78399333 + 78399313 78399353 41 AGCACCAGGCCCCTCTACATCTCCGTGGGCCACAGGATGAG AGCACCAGGCCCCTCTACATCTTCGTGGGCCACAGGATGAG < 41bp 0.849271466036414 0.619142976872262 0.42507088 0.27670586 prediction 0.460256978328303 Functional Loss - ENDOV ENSG00000173818 CDS Human protein_coding chr17:78399333 chr17:78399335 nonsynonymous SNV 0.979 4 23 hm5C_associated_SNPs_74913 0 0 0 0 2 ENDOV chr17:78399292 3'AG 78399292 Downstream 44bp
chr17 78399335 78399335 1 + C T SKCM 78399333 + 78399313 78399353 41 AGCACCAGGCCCCTCTACATCTCCGTGGGCCACAGGATGAG AGCACCAGGCCCCTCTACATCTTCGTGGGCCACAGGATGAG < 41bp 0.849271466036414 0.619142976872262 0.42507088 0.27670586 prediction 0.460256978328303 Functional Loss - ENDOV ENSG00000173818 CDS Human protein_coding chr17:78399333 chr17:78399335 nonsynonymous SNV 0.979 4 23 hm5C_associated_SNPs_74913 0 0 0 0 2 ENDOV chr17:78399420 5'GT 78399420 Upstream 86bp
chr20 2291763 2291763 1 + G A SKCM 2291760 + 2291740 2291780 41 AACCGAATTGGCATGATTGGCTGGAACTTTGGACAGGTAAA AACCGAATTGGCATGATTGGCTGAAACTTTGGACAGGTAAA < 41bp 0.757663015417317 0.527540523414945 0.6096357 0.31468716 prediction 0.460244984004743 Functional Loss - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2291760 chr20:2291763 stopgain 1.000 1 24 hm5C_associated_SNPs_74916 0 0 0 0 1 TGM3 chr20:2291775 5'GT 2291775 Upstream 13bp
chr1 25617208 25617208 1 + C T GBM 25617206 + 25617186 25617226 41 CTTGGGGAAGGTCAACTTGGCGCAGTTGGTGGTGATGGTGC CTTGGGGAAGGTCAACTTGGCGTAGTTGGTGGTGATGGTGC < 41bp 0.730120016994257 0.464069076576972 0.34066623 0.38419563 prediction 0.460240033988514 Functional Loss - RHD ENSG00000187010 CDS Human protein_coding chr1:25617206 chr1:25617208 stopgain 0.248 1 23 hm5C_associated_SNPs_74918 0 0 0 0 2 RHD chr1:25617132 3'AG 25617132 Downstream 77bp
chr1 25617208 25617208 1 + C T GBM 25617206 + 25617186 25617226 41 CTTGGGGAAGGTCAACTTGGCGCAGTTGGTGGTGATGGTGC CTTGGGGAAGGTCAACTTGGCGTAGTTGGTGGTGATGGTGC < 41bp 0.730120016994257 0.464069076576972 0.34066623 0.38419563 prediction 0.460240033988514 Functional Loss - RHD ENSG00000187010 CDS Human protein_coding chr1:25617206 chr1:25617208 stopgain 0.248 1 23 hm5C_associated_SNPs_74918 0 0 0 0 2 RHD chr1:25617282 5'GT 25617282 Upstream 75bp
chr17 40818451 40818451 1 + G A rs1554227 40818448 + 40818428 40818468 41 AGGAAGTCTCCCTACCTGCCCTCGGCCCACCGGGTCAGCGG AGGAAGTCTCCCTACCTGCCCTCAGCCCACCGGGTCAGCGG < 41bp 0.779395094353299 0.549276923528881 0.11513293 0.037016362 prediction 0.460236341648835 Functional Loss - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40818448 chr17:40818451 synonymous SNV . 0 24 hm5C_associated_SNPs_74919 0 0 0 0 1 TUBG2 chr17:40818502 5'GT 40818502 Upstream 52bp
chr6 159086478 159086478 1 + G A rs140305892 159086475 + 159086455 159086495 41 CGGTGGAAAGGAGCGAAGAACACGGACTGGGAGCACAAAGA CGGTGGAAAGGAGCGAAGAACACAGACTGGGAGCACAAAGA < 41bp 0.781340819653693 0.551224857702863 0.34017307 0.15735573 prediction 0.460231923901659 Functional Loss - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159086475 chr6:159086478 synonymous SNV . 0 24 hm5C_associated_SNPs_74921 0 0 0 0 2 SYTL3 chr6:159086419 3'AG 159086419 Downstream 60bp
chr6 159086478 159086478 1 + G A rs140305892 159086475 + 159086455 159086495 41 CGGTGGAAAGGAGCGAAGAACACGGACTGGGAGCACAAAGA CGGTGGAAAGGAGCGAAGAACACAGACTGGGAGCACAAAGA < 41bp 0.781340819653693 0.551224857702863 0.34017307 0.15735573 prediction 0.460231923901659 Functional Loss - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159086475 chr6:159086478 synonymous SNV . 0 24 hm5C_associated_SNPs_74921 0 0 0 0 2 SYTL3 chr6:159086427 3'AG 159086427 Downstream 52bp
chr16 31499039 31499039 1 + G A LUAD 31499036 + 31499016 31499056 41 TGCCGTGGCCCGCGCTGCTCCTCGGACTCACAATCGTCTCG TGCCGTGGCCCGCGCTGCTCCTCAGACTCACAATCGTCTCG < 41bp 0.797974067122648 0.567865598163505 0.35454208 0.2903571 prediction 0.460216937918286 Functional Loss - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31499036 chr16:31499039 nonsynonymous SNV 0.976 5 24 hm5C_associated_SNPs_74925 0 0 0 0 1 SLC5A2 chr16:31499080 5'GT 31499080 Upstream 42bp
chr21 48064353 48064353 1 + G A UCEC 48064350 + 48064330 48064370 41 AGCACGTGGATGAGTACGACCCCGAGGACACGTGGCAGGAT AGCACGTGGATGAGTACGACCCCAAGGACACGTGGCAGGAT < 41bp 0.761181541237074 0.53107449117232 0.37725067 0.2285169 prediction 0.460214100129509 Functional Loss - PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48064350 chr21:48064353 nonsynonymous SNV 0.193 3 24 hm5C_associated_SNPs_74926 0 0 1 0 1 PRMT2 chr21:48064400 5'GT 48064400 Upstream 48bp
chr17 55062815 55062815 1 + G T THCA 55062812 + 55062792 55062832 41 CCTTGACAGTGATCTCAAACCACGGAAAACCACCTGGGTAC CCTTGACAGTGATCTCAAACCACTGAAAACCACCTGGGTAC < 41bp 0.924777669028867 0.694672834273431 0.7362224 0.83778083 prediction 0.460209669510872 Functional Loss - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55062812 chr17:55062815 nonsynonymous SNV 0.273 5 24 hm5C_associated_SNPs_74928 0 0 0 0 2 SCPEP1 chr17:55062739 3'AG 55062739 Downstream 77bp
chr17 55062815 55062815 1 + G T THCA 55062812 + 55062792 55062832 41 CCTTGACAGTGATCTCAAACCACGGAAAACCACCTGGGTAC CCTTGACAGTGATCTCAAACCACTGAAAACCACCTGGGTAC < 41bp 0.924777669028867 0.694672834273431 0.7362224 0.83778083 prediction 0.460209669510872 Functional Loss - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55062812 chr17:55062815 nonsynonymous SNV 0.273 5 24 hm5C_associated_SNPs_74928 0 0 0 0 2 SCPEP1 chr17:55062828 5'GT 55062828 Upstream 14bp
chr4 110415857 110415857 1 + C T LGG 110415855 + 110415835 110415875 41 TGCTCCAGCTCCAGCTTCAGCTCCAGCTCCTGTCGTCCCTC TGCTCCAGCTCCAGCTTCAGCTTCAGCTCCTGTCGTCCCTC < 41bp 0.84975470560345 0.619650507805718 0.4471722 0.058923125 prediction 0.460208395595463 Functional Loss - SEC24B ENSG00000138802 CDS Human protein_coding chr4:110415855 chr4:110415857 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_74929 0 0 1 0 1 SEC24B chr4:110415771 3'AG 110415771 Downstream 87bp
chr17 4804388 4804388 1 - C T COAD 4804391 - 4804371 4804411 41 GGGGAGACTGACGTCATCTACTCGCTCATCATCCGCCGGAA GGGGAGACTGACGTCATCTACTCACTCATCATCCGCCGGAA < 41bp 0.730102278544259 0.470671349189965 0.49193186 0.079370946 prediction 0.460204557088517 Functional Loss - CHRNE ENSG00000108556 CDS Human protein_coding chr17:4804391 chr17:4804388 synonymous SNV . 0 24 hm5C_associated_SNPs_74930 0 0 0 0 1 CHRNE chr17:4804485 3'AG 4804485 Downstream 98bp
chr11 73677268 73677268 1 + G A COAD 73677265 + 73677245 73677285 41 GCCCGGTTGGAGGCAGGGCACACGCATCACCTTTGAGAAGG GCCCGGTTGGAGGCAGGGCACACACATCACCTTTGAGAAGG < 41bp 0.762679296634006 0.532578527914805 0.029429704 0.014194399 prediction 0.460201537438401 Functional Loss - DNAJB13 ENSG00000187726 CDS Human protein_coding chr11:73677265 chr11:73677268 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_74933 0 0 0 0 2 DNAJB13 chr11:73677183 3'AG 73677183 Downstream 86bp
chr11 73677268 73677268 1 + G A COAD 73677265 + 73677245 73677285 41 GCCCGGTTGGAGGCAGGGCACACGCATCACCTTTGAGAAGG GCCCGGTTGGAGGCAGGGCACACACATCACCTTTGAGAAGG < 41bp 0.762679296634006 0.532578527914805 0.029429704 0.014194399 prediction 0.460201537438401 Functional Loss - DNAJB13 ENSG00000187726 CDS Human protein_coding chr11:73677265 chr11:73677268 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_74933 0 0 0 0 2 DNAJB13 chr11:73677296 5'GT 73677296 Upstream 29bp
chr2 233244269 233244269 1 + C T UCEC 233244267 + 233244247 233244287 41 CCAGACAGTGGAGCCACAGCCACGGCCTACCTGTGCGGGGT CCAGACAGTGGAGCCACAGCCATGGCCTACCTGTGCGGGGT < 41bp 0.730100602154815 0.464432779823026 0.7057936 0.75423455 prediction 0.460201204309629 Functional Loss - ALPP ENSG00000163283 CDS Human protein_coding chr2:233244267 chr2:233244269 nonsynonymous SNV 0.782 5 23 hm5C_associated_SNPs_74934 0 0 0 0 1 ALPP chr2:233244223 3'AG 233244223 Downstream 47bp
chr7 71130439 71130439 1 + G A BLCA 71130436 + 71130416 71130456 41 CATGGAGGTCCTTCCTTGCTCACGGGTGGCCCACATTGAGC CATGGAGGTCCTTCCTTGCTCACAGGTGGCCCACATTGAGC < 41bp 0.739548749423178 0.509451377496606 0.7194786 0.2545597 prediction 0.460194743853145 Functional Loss - GALNT17 ENSG00000185274 CDS Human protein_coding chr7:71130436 chr7:71130439 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_74937 0 0 0 0 1 GALNT17 chr7:71130396 3'AG 71130396 Downstream 44bp
chr1 110996697 110996697 1 + G A UCEC 110996694 + 110996674 110996714 41 GGGAAGGCGAGGAGTGCCACCCCGGCAGCCACAAGGTACTC GGGAAGGCGAGGAGTGCCACCCCAGCAGCCACAAGGTACTC < 41bp 0.756702139410495 0.526609350046872 0.07599348 0.05279225 prediction 0.460185578727245 Functional Loss - PROK1 ENSG00000143125 CDS Human protein_coding chr1:110996694 chr1:110996697 nonsynonymous SNV 0.563 1 24 hm5C_associated_SNPs_74940 0 0 0 0 1 PROK1 chr1:110996708 5'GT 110996708 Upstream 12bp
chr17 47293944 47293944 1 + G A COAD 47293941 + 47293921 47293961 41 AGACCATGGCCTTCACTACCCAGGCACTGGCCAGCGTGGCC AGACCATGGCCTTCACTACCCAGACACTGGCCAGCGTGGCC < 41bp 0.773835345249612 0.543743997079778 0.751722 0.31357375 prediction 0.460182696339668 Functional Loss - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47293941 chr17:47293944 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_74941 0 0 0 0 2 ABI3 chr17:47293893 3'AG 47293893 Downstream 52bp
chr17 47293944 47293944 1 + G A COAD 47293941 + 47293921 47293961 41 AGACCATGGCCTTCACTACCCAGGCACTGGCCAGCGTGGCC AGACCATGGCCTTCACTACCCAGACACTGGCCAGCGTGGCC < 41bp 0.773835345249612 0.543743997079778 0.751722 0.31357375 prediction 0.460182696339668 Functional Loss - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47293941 chr17:47293944 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_74941 0 0 0 0 2 ABI3 chr17:47294042 5'GT 47294042 Upstream 99bp
chr19 56520206 56520206 1 + G A SKCM 56520203 + 56520183 56520223 41 ATGACTGACCAAGGACCAAGCAAGGAAAAAGTGCCAGGTTA ATGACTGACCAAGGACCAAGCAAAGAAAAAGTGCCAGGTTA < 41bp 0.730091271581461 0.497813146603524 0.90109026 0.43206882 prediction 0.460182543162923 Functional Loss - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56520203 chr19:56520206 synonymous SNV . 0 24 hm5C_associated_SNPs_74942 0 0 0 0 2 NLRP5 chr19:56520154 3'AG 56520154 Downstream 53bp
chr19 56520206 56520206 1 + G A SKCM 56520203 + 56520183 56520223 41 ATGACTGACCAAGGACCAAGCAAGGAAAAAGTGCCAGGTTA ATGACTGACCAAGGACCAAGCAAAGAAAAAGTGCCAGGTTA < 41bp 0.730091271581461 0.497813146603524 0.90109026 0.43206882 prediction 0.460182543162923 Functional Loss - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56520203 chr19:56520206 synonymous SNV . 0 24 hm5C_associated_SNPs_74942 0 0 0 0 2 NLRP5 chr19:56520219 5'GT 56520219 Upstream 14bp
chr5 172362214 172362214 1 + G A UCEC 172362211 + 172362191 172362231 41 GAATACGTCGCCTACAGCCACACGGGCCGCATCATCCCTGC GAATACGTCGCCTACAGCCACACAGGCCGCATCATCCCTGC < 41bp 0.730091242561421 0.490463247036806 0.27566192 0.015557766 prediction 0.460182485122843 Functional Loss - ERGIC1 ENSG00000113719 CDS Human protein_coding chr5:172362211 chr5:172362214 synonymous SNV . 0 24 hm5C_associated_SNPs_74943 0 0 1 0 2 ERGIC1 chr5:172362191 3'AG 172362191 Downstream 24bp
chr5 172362214 172362214 1 + G A UCEC 172362211 + 172362191 172362231 41 GAATACGTCGCCTACAGCCACACGGGCCGCATCATCCCTGC GAATACGTCGCCTACAGCCACACAGGCCGCATCATCCCTGC < 41bp 0.730091242561421 0.490463247036806 0.27566192 0.015557766 prediction 0.460182485122843 Functional Loss - ERGIC1 ENSG00000113719 CDS Human protein_coding chr5:172362211 chr5:172362214 synonymous SNV . 0 24 hm5C_associated_SNPs_74943 0 0 1 0 2 ERGIC1 chr5:172362313 5'GT 172362313 Upstream 100bp
chr3 89390202 89390202 1 + T C LGG 89390201 + 89390181 89390221 41 CTTCCGGGCAGACAAAGACCCTCCATCCATGGCTTGTACCC CTTCCGGGCAGACAAAGACCCCCCATCCATGGCTTGTACCC < 41bp 0.730086983307001 0.468986035346144 0.9364245 0.0269112 prediction 0.460173966614001 Functional Loss - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89390201 chr3:89390202 synonymous SNV . 0 22 hm5C_associated_SNPs_74945 0 0 0 0 1 EPHA3 chr3:89390221 5'GT 89390221 Upstream 20bp
chr1 3679714 3679714 1 + G A UCEC 3679711 + 3679691 3679731 41 CACCGGAGAGGGGCAAGGAGCCCGACCTGGGAGGTGGCGAG CACCGGAGAGGGGCAAGGAGCCCAACCTGGGAGGTGGCGAG < 41bp 0.770494934754019 0.540410876174083 0.2611493 0.12286025 prediction 0.460168117159872 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3679711 chr1:3679714 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_74946 0 0 0 0 1 CCDC27 chr1:3679672 3'AG 3679672 Downstream 43bp
chr21 44171281 44171281 1 + C T SKCM 44171279 + 44171259 44171299 41 TAACCACAAGAAGTTGACTCCTCGACGCGATGTTCCCACTT TAACCACAAGAAGTTGACTCCTTGACGCGATGTTCCCACTT < 41bp 0.809614972413001 0.579531377094188 0.8253126 0.11703861 prediction 0.460167190637626 Functional Loss - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44171279 chr21:44171281 stopgain 0.641 0 23 hm5C_associated_SNPs_74947 0 0 0 0 2 PDE9A chr21:44171226 3'AG 44171226 Downstream 56bp
chr21 44171281 44171281 1 + C T SKCM 44171279 + 44171259 44171299 41 TAACCACAAGAAGTTGACTCCTCGACGCGATGTTCCCACTT TAACCACAAGAAGTTGACTCCTTGACGCGATGTTCCCACTT < 41bp 0.809614972413001 0.579531377094188 0.8253126 0.11703861 prediction 0.460167190637626 Functional Loss - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44171279 chr21:44171281 stopgain 0.641 0 23 hm5C_associated_SNPs_74947 0 0 0 0 2 PDE9A chr21:44171307 5'GT 44171307 Upstream 27bp
chr10 104488286 104488286 1 + G T GBM 104488284 + 104488264 104488304 41 GCGGCTTCCCCCACATCAGTCAGGTAGGAGACCTGAACCCC GCGGCTTCCCCCACATCAGTCATGTAGGAGACCTGAACCCC < 41bp 0.730081903081261 0.370642357548969 0.87895274 0.21437863 prediction 0.460163806162522 Functional Loss - SFXN2 ENSG00000156398 CDS Human protein_coding chr10:104488284 chr10:104488286 nonsynonymous SNV 0.897 1 23 hm5C_associated_SNPs_74949 0 0 1 0 2 SFXN2 chr10:104488188 3'AG 104488188 Downstream 99bp
chr10 104488286 104488286 1 + G T GBM 104488284 + 104488264 104488304 41 GCGGCTTCCCCCACATCAGTCAGGTAGGAGACCTGAACCCC GCGGCTTCCCCCACATCAGTCATGTAGGAGACCTGAACCCC < 41bp 0.730081903081261 0.370642357548969 0.87895274 0.21437863 prediction 0.460163806162522 Functional Loss - SFXN2 ENSG00000156398 CDS Human protein_coding chr10:104488284 chr10:104488286 nonsynonymous SNV 0.897 1 23 hm5C_associated_SNPs_74949 0 0 1 0 2 SFXN2 chr10:104488286 5'GT 104488286 Upstream 1bp
chr5 78573778 78573778 1 + G A rs35345418 78573775 + 78573755 78573795 41 CAGAGAGCATGGTGGAGCTTCTGGACTTGTATCAGATGGAG CAGAGAGCATGGTGGAGCTTCTGAACTTGTATCAGATGGAG < 41bp 0.730080478066804 0.493973953637312 0.22101128 0.15701336 prediction 0.460160956133608 Functional Loss - JMY ENSG00000152409 CDS Human protein_coding chr5:78573775 chr5:78573778 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_74951 0 0 1 0 1 JMY chr5:78573733 3'AG 78573733 Downstream 46bp
chr10 126515200 126515200 1 + C T LUSC 126515198 + 126515178 126515218 41 GTACAGATTCCGGCGCAATACGCAGCAGCAGATGTCCTACA GTACAGATTCCGGCGCAATACGTAGCAGCAGATGTCCTACA < 41bp 0.821618289295397 0.591539119102843 0.19920373 0.16721666 prediction 0.460158340385108 Functional Loss - ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126515198 chr10:126515200 stopgain 0.912 1 23 hm5C_associated_SNPs_74953 0 0 0 0 1 ABRAXAS2 chr10:126515164 3'AG 126515164 Downstream 37bp
chr7 133948678 133948678 1 + G A OV 133948675 + 133948655 133948695 41 GGTCCCAGTCATCAGTCGCCCAGGTTCCAACGTCAAACCCA GGTCCCAGTCATCAGTCGCCCAGATTCCAACGTCAAACCCA < 41bp 0.767865177882939 0.537786649876412 0.19646257 0.054227233 prediction 0.460157056013054 Functional Loss - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133948675 chr7:133948678 nonsynonymous SNV 0.812 3 24 hm5C_associated_SNPs_74954 0 0 0 0 1 LRGUK chr7:133948597 3'AG 133948597 Downstream 82bp
chrX 38268220 38268220 1 + A C rs1800328 38268219 + 38268199 38268239 41 ACACTTGGATAAGCATGGGACAAGAAGAGGAGAAGAAAAAG ACACTTGGATAAGCATGGGACCAGAAGAGGAGAAGAAAAAG < 41bp 0.730073937168988 0.471352495748622 0.3234982 0.35210812 prediction 0.460147874337976 Functional Loss - OTC ENSG00000036473 CDS Human protein_coding chrX:38268219 chrX:38268220 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_74955 1 0 0 0 2 OTC chrX:38268129 3'AG 38268129 Downstream 92bp
chrX 38268220 38268220 1 + A C rs1800328 38268219 + 38268199 38268239 41 ACACTTGGATAAGCATGGGACAAGAAGAGGAGAAGAAAAAG ACACTTGGATAAGCATGGGACCAGAAGAGGAGAAGAAAAAG < 41bp 0.730073937168988 0.471352495748622 0.3234982 0.35210812 prediction 0.460147874337976 Functional Loss - OTC ENSG00000036473 CDS Human protein_coding chrX:38268219 chrX:38268220 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_74955 1 0 0 0 2 OTC chrX:38268278 5'GT 38268278 Upstream 59bp
chr7 6624862 6624862 1 + C T SKCM 6624859 + 6624839 6624879 41 ACATCGATGACCTTGGACACCTCCATGTTATGGACACGGTC ACATCGATGACCTTGGACACCTCTATGTTATGGACACGGTC < 41bp 0.733889364741959 0.503832092773172 0.96122885 0.90215814 prediction 0.460114543937573 Functional Loss - ZDHHC4 ENSG00000136247 CDS Human protein_coding chr7:6624859 chr7:6624862 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_74964 0 0 1 0 1 ZDHHC4 chr7:6624891 5'GT 6624891 Upstream 30bp
chrX 69419224 69419224 1 + C T rs192002540 69419222 + 69419202 69419242 41 TCACCTATGATTGGAACACCCACAGTCAAGGTAAGAGACAG TCACCTATGATTGGAACACCCATAGTCAAGGTAAGAGACAG < 41bp 0.818162979924407 0.588109735547953 0.07129443 0.088430434 prediction 0.460106488752908 Functional Loss - DGAT2L6 ENSG00000184210 CDS Human protein_coding chrX:69419222 chrX:69419224 synonymous SNV . 0 23 hm5C_associated_SNPs_74965 0 0 0 0 1 DGAT2L6 chrX:69419231 5'GT 69419231 Upstream 8bp
chr12 6562704 6562704 1 + C T LUSC 6562702 + 6562682 6562722 41 GTGAGATCTCCCGCTACTTTCTCCAGATGACAGAGACCACT GTGAGATCTCCCGCTACTTTCTTCAGATGACAGAGACCACT < 41bp 0.730045002525132 0.440753039510073 0.92520386 0.19435659 prediction 0.460090005050263 Functional Loss - TAPBPL ENSG00000139192 CDS Human protein_coding chr12:6562702 chr12:6562704 synonymous SNV . 0 23 hm5C_associated_SNPs_74968 0 0 0 0 1 TAPBPL chr12:6562613 3'AG 6562613 Downstream 92bp
chr3 126423232 126423232 1 + A C rs202222271 126423228 + 126423208 126423248 41 AGGAGGAGCGGGTCCGGGTGCTGCAGGGTGTCCGGGTGAGC AGGAGGAGCGGGTCCGGGTGCTGCCGGGTGTCCGGGTGAGC < 41bp 0.915426510949075 0.685381686203893 0.43154 0.4345111 prediction 0.460089649490364 Functional Loss - CHCHD6 ENSG00000159685 CDS Human protein_coding chr3:126423228 chr3:126423232 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_74969 0 0 1 0 1 CHCHD6 chr3:126423242 5'GT 126423242 Upstream 11bp
chr8 24255245 24255245 1 + T C COAD 24255244 + 24255224 24255264 41 ACATTGATCTCTATTTGGTGCTGGATAATGCCTTTGTGAGT ACATTGATCTCTATTTGGTGCCGGATAATGCCTTTGTGAGT < 41bp 0.751947592803155 0.521904080268414 0.29241335 0.5710666 prediction 0.460087025069481 Functional Loss - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24255244 chr8:24255245 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_74970 0 0 0 0 2 ADAMDEC1 chr8:24255196 3'AG 24255196 Downstream 50bp
chr8 24255245 24255245 1 + T C COAD 24255244 + 24255224 24255264 41 ACATTGATCTCTATTTGGTGCTGGATAATGCCTTTGTGAGT ACATTGATCTCTATTTGGTGCCGGATAATGCCTTTGTGAGT < 41bp 0.751947592803155 0.521904080268414 0.29241335 0.5710666 prediction 0.460087025069481 Functional Loss - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24255244 chr8:24255245 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_74970 0 0 0 0 2 ADAMDEC1 chr8:24255258 5'GT 24255258 Upstream 14bp
chr14 65197822 65197822 1 + A C ESCA 65197818 + 65197798 65197838 41 GTGGTGGAGGATGCCATTGACACCATGACCTGTGTGGCCTG GTGGTGGAGGATGCCATTGACACCCTGACCTGTGTGGCCTG < 41bp 0.730043204774394 0.295877985054767 0.30721462 0.18147066 prediction 0.460086409548788 Functional Loss - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65197818 chr14:65197822 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_74971 0 0 1 0 2 PLEKHG3 chr14:65197756 3'AG 65197756 Downstream 67bp
chr14 65197822 65197822 1 + A C ESCA 65197818 + 65197798 65197838 41 GTGGTGGAGGATGCCATTGACACCATGACCTGTGTGGCCTG GTGGTGGAGGATGCCATTGACACCCTGACCTGTGTGGCCTG < 41bp 0.730043204774394 0.295877985054767 0.30721462 0.18147066 prediction 0.460086409548788 Functional Loss - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65197818 chr14:65197822 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_74971 0 0 1 0 2 PLEKHG3 chr14:65197887 5'GT 65197887 Upstream 66bp
chr9 27220066 27220066 1 + G A rs2273719 27220063 + 27220043 27220083 41 CCAGGAGGCACACCCTACTGCGGGATGACTTGTGCAGAACT CCAGGAGGCACACCCTACTGCGGAATGACTTGTGCAGAACT < 41bp 0.737236135644168 0.507195532155719 0.8954948 0.72624767 prediction 0.460081206976898 Functional Loss - TEK ENSG00000120156 CDS Human protein_coding chr9:27220063 chr9:27220066 synonymous SNV . 0 24 hm5C_associated_SNPs_74972 1 0 0 0 2 TEK chr9:27220047 3'AG 27220047 Downstream 20bp
chr9 27220066 27220066 1 + G A rs2273719 27220063 + 27220043 27220083 41 CCAGGAGGCACACCCTACTGCGGGATGACTTGTGCAGAACT CCAGGAGGCACACCCTACTGCGGAATGACTTGTGCAGAACT < 41bp 0.737236135644168 0.507195532155719 0.8954948 0.72624767 prediction 0.460081206976898 Functional Loss - TEK ENSG00000120156 CDS Human protein_coding chr9:27220063 chr9:27220066 synonymous SNV . 0 24 hm5C_associated_SNPs_74972 1 0 0 0 2 TEK chr9:27220143 5'GT 27220143 Upstream 78bp
chr15 45047573 45047573 1 + C T rs3100139 45047571 + 45047551 45047591 41 TCTGATGCTGTCCATTTCTTCACGGTGGGTGAGCCCTGGGC TCTGATGCTGTCCATTTCTTCATGGTGGGTGAGCCCTGGGC < 41bp 0.816003211016913 0.585966559205884 0.6155377 0.68504107 prediction 0.460073303622057 Functional Loss - TRIM69 ENSG00000185880 CDS Human protein_coding chr15:45047571 chr15:45047573 nonsynonymous SNV 0.052 0 23 hm5C_associated_SNPs_74973 0 0 0 0 1 TRIM69 chr15:45047574 5'GT 45047574 Upstream 2bp
chr22 29445207 29445207 1 + G A GBM 29445204 + 29445184 29445224 41 GAACAAAAGGGAAACCCAAGCGCGGTGTGTGTGGAGACCAG GAACAAAAGGGAAACCCAAGCGCAGTGTGTGTGGAGACCAG < 41bp 0.752855023260404 0.522821060915654 0.39667523 0.15189883 prediction 0.460067924689499 Functional Loss - ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29445204 chr22:29445207 synonymous SNV . 0 24 hm5C_associated_SNPs_74975 0 0 1 0 1 ZNRF3 chr22:29445185 3'AG 29445185 Downstream 23bp
chr2 45170030 45170030 1 + G A PRAD 45170027 + 45170007 45170047 41 AGAACCGGCGGCAGCGCGACCGCGCCGCGGCGGCCAAGAAC AGAACCGGCGGCAGCGCGACCGCACCGCGGCGGCCAAGAAC < 41bp 0.73003326870931 0.484927753432279 0.7397052 0.29163033 prediction 0.46006653741862 Functional Loss - SIX3 ENSG00000138083 CDS Human protein_coding chr2:45170027 chr2:45170030 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_74977 0 0 0 0 1 SIX3 chr2:45170049 5'GT 45170049 Upstream 20bp
chr17 79205719 79205719 1 - G A CESC 79205721 - 79205701 79205741 41 AACAGCGACCTGAGCAGGGTCTCGGACTCGGGCAGTCATTC AACAGCGACCTGAGCAGGGTCTTGGACTCGGGCAGTCATTC < 41bp 0.730030724870992 0.447352327574213 0.52541834 0.28650367 prediction 0.460061449741984 Functional Loss - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79205721 chr17:79205719 nonsynonymous SNV 0.012 1 23 hm5C_associated_SNPs_74978 0 0 1 0 1 TEPSIN chr17:79205647 5'GT 79205647 Upstream 73bp
chr11 22248881 22248881 1 + A C LUAD 22248877 + 22248857 22248897 41 GATGGAAGAACTTATTTTGTCAAGATCCATGCCCCTTGGGA GATGGAAGAACTTATTTTGTCAAGCTCCATGCCCCTTGGGA < 41bp 0.730029616104425 0.332237220857791 0.5247357 0.21224794 prediction 0.46005923220885 Functional Loss - ANO5 ENSG00000171714 CDS Human protein_coding chr11:22248877 chr11:22248881 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_74983 0 0 1 0 1 ANO5 chr11:22248848 3'AG 22248848 Downstream 34bp
chr12 132379629 132379629 1 + C T GBM 132379627 + 132379607 132379647 41 CTGATCGGCCACGGCGCCTTCGCGGTGGTCTTCAAGGGCCG CTGATCGGCCACGGCGCCTTCGTGGTGGTCTTCAAGGGCCG < 41bp 0.742887475122723 0.512858576746159 0.7978878 0.86968243 prediction 0.460057796753129 Functional Loss - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132379627 chr12:132379629 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_74985 0 0 1 0 1 ULK1 chr12:132379657 5'GT 132379657 Upstream 29bp
chr16 22563737 22563737 1 + G T UCEC 22563734 + 22563714 22563754 41 ATCCTTCTGCAAGCAGCTTCCAAGATGGCCAGGACCCTGCC ATCCTTCTGCAAGCAGCTTCCAATATGGCCAGGACCCTGCC < 41bp 0.730026725784364 0.47045094768085 0.7906216 0.3028267 prediction 0.460053451568728 Functional Loss - LOC653786 ENSG00000257838 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:22563734 chr16:22563737 . . 0 24 hm5C_associated_SNPs_74986 0 0 0 0 2 LOC653786 chr16:22563705 3'AG 22563705 Downstream 33bp
chr16 22563737 22563737 1 + G T UCEC 22563734 + 22563714 22563754 41 ATCCTTCTGCAAGCAGCTTCCAAGATGGCCAGGACCCTGCC ATCCTTCTGCAAGCAGCTTCCAATATGGCCAGGACCCTGCC < 41bp 0.730026725784364 0.47045094768085 0.7906216 0.3028267 prediction 0.460053451568728 Functional Loss - LOC653786 ENSG00000257838 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:22563734 chr16:22563737 . . 0 24 hm5C_associated_SNPs_74986 0 0 0 0 2 LOC653786 chr16:22563834 5'GT 22563834 Upstream 98bp
chr4 3446111 3446111 1 + C T STAD 3446109 + 3446089 3446129 41 GGGCCCGCGTGCGCCAGGGCCACGTGGAACAGTGCGAGTGC GGGCCCGCGTGCGCCAGGGCCATGTGGAACAGTGCGAGTGC < 41bp 0.779614598167803 0.549598592745942 0.80689585 0.61794037 prediction 0.460032010843723 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3446109 chr4:3446111 synonymous SNV . 0 23 hm5C_associated_SNPs_74991 0 0 1 0 2 HGFAC chr4:3446038 3'AG 3446038 Downstream 74bp
chr4 3446111 3446111 1 + C T STAD 3446109 + 3446089 3446129 41 GGGCCCGCGTGCGCCAGGGCCACGTGGAACAGTGCGAGTGC GGGCCCGCGTGCGCCAGGGCCATGTGGAACAGTGCGAGTGC < 41bp 0.779614598167803 0.549598592745942 0.80689585 0.61794037 prediction 0.460032010843723 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3446109 chr4:3446111 synonymous SNV . 0 23 hm5C_associated_SNPs_74991 0 0 1 0 2 HGFAC chr4:3446169 5'GT 3446169 Upstream 59bp
chr5 137766111 137766111 1 + C T SARC 137766109 + 137766089 137766129 41 TCATACCTGCTGGAGCCCCACACCAGGTGGGTTCCTGCTTG TCATACCTGCTGGAGCCCCACATCAGGTGGGTTCCTGCTTG < 41bp 0.730013737599771 0.440281644320596 0.15256551 0.19166368 prediction 0.460027475199541 Functional Loss - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137766109 chr5:137766111 synonymous SNV . 0 23 hm5C_associated_SNPs_74992 0 0 1 0 1 KDM3B chr5:137766114 5'GT 137766114 Upstream 4bp
chr3 161217019 161217019 1 + A T HNSC 161217015 + 161216995 161217035 41 GGCCACCAGGAGTTGTTGGGCCCCAAGGCCCTAGAGGCTAC GGCCACCAGGAGTTGTTGGGCCCCTAGGCCCTAGAGGCTAC < 41bp 0.730009821323091 0.388287082907021 0.18278101 0.1981171 prediction 0.460019642646182 Functional Loss - OTOL1 ENSG00000182447 CDS Human protein_coding chr3:161217015 chr3:161217019 nonsynonymous SNV 0.975 1 25 hm5C_associated_SNPs_74993 0 0 0 0 2 OTOL1 chr3:161216959 3'AG 161216959 Downstream 61bp
chr3 161217019 161217019 1 + A T HNSC 161217015 + 161216995 161217035 41 GGCCACCAGGAGTTGTTGGGCCCCAAGGCCCTAGAGGCTAC GGCCACCAGGAGTTGTTGGGCCCCTAGGCCCTAGAGGCTAC < 41bp 0.730009821323091 0.388287082907021 0.18278101 0.1981171 prediction 0.460019642646182 Functional Loss - OTOL1 ENSG00000182447 CDS Human protein_coding chr3:161217015 chr3:161217019 nonsynonymous SNV 0.975 1 25 hm5C_associated_SNPs_74993 0 0 0 0 2 OTOL1 chr3:161217048 5'GT 161217048 Upstream 30bp
chr2 173855632 173855632 1 + G C LUAD 173855628 + 173855608 173855648 41 CAGGGAACAGAGCTTCTAATCAAGGAAACTCACAGCCTCAG CAGGGAACAGAGCTTCTAATCAAGCAAACTCACAGCCTCAG < 41bp 0.730003115658857 0.452196588868553 0.90999746 0.2849715 prediction 0.460006231317715 Functional Loss - RAPGEF4 ENSG00000091428 CDS Human protein_coding chr2:173855628 chr2:173855632 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_74997 0 0 0 0 2 RAPGEF4 chr2:173855538 3'AG 173855538 Downstream 95bp
chr2 173855632 173855632 1 + G C LUAD 173855628 + 173855608 173855648 41 CAGGGAACAGAGCTTCTAATCAAGGAAACTCACAGCCTCAG CAGGGAACAGAGCTTCTAATCAAGCAAACTCACAGCCTCAG < 41bp 0.730003115658857 0.452196588868553 0.90999746 0.2849715 prediction 0.460006231317715 Functional Loss - RAPGEF4 ENSG00000091428 CDS Human protein_coding chr2:173855628 chr2:173855632 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_74997 0 0 0 0 2 RAPGEF4 chr2:173855653 5'GT 173855653 Upstream 22bp
chr12 64818918 64818918 1 + G T COAD 64818916 + 64818896 64818936 41 ATCTCATGGTGCTCACTTCTCAGGTGATGTTTCAAAAGCTA ATCTCATGGTGCTCACTTCTCATGTGATGTTTCAAAAGCTA < 41bp 0.730002529324551 0.383780508253144 0.8865024 0.31909603 prediction 0.460005058649102 Functional Loss - XPOT ENSG00000184575 CDS Human protein_coding chr12:64818916 chr12:64818918 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_74998 0 0 1 0 1 XPOT chr12:64818962 5'GT 64818962 Upstream 45bp
chr20 48503419 48503419 1 + G A STAD 48503416 + 48503396 48503436 41 GTACCTGAACCCCTTCTTCACTCGGAGGCTGACGCAGGAGG GTACCTGAACCCCTTCTTCACTCAGAGGCTGACGCAGGAGG < 41bp 0.730000771343435 0.482703327356256 0.19411099 0.061038136 prediction 0.46000154268687 Functional Loss - SLC9A8 ENSG00000197818 CDS Human protein_coding chr20:48503416 chr20:48503419 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_75001 0 0 0 0 1 SLC9A8 chr20:48503435 5'GT 48503435 Upstream 17bp
chr19 54609317 54609317 1 + A C GBM 54609316 + 54609296 54609336 41 GGCCACGCCCTACAACTACCCAGGTGAGTGGGGGCCAGGCA GGCCACGCCCTACAACTACCCCGGTGAGTGGGGGCCAGGCA < 41bp 0.812175942945462 0.582179452638136 0.8338398 0.25329936 prediction 0.459992980614654 Functional Loss - NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54609316 chr19:54609317 nonsynonymous SNV 0.990 0 22 hm5C_associated_SNPs_75003 0 0 1 0 2 NDUFA3 chr19:54609241 3'AG 54609241 Downstream 77bp
chr19 54609317 54609317 1 + A C GBM 54609316 + 54609296 54609336 41 GGCCACGCCCTACAACTACCCAGGTGAGTGGGGGCCAGGCA GGCCACGCCCTACAACTACCCCGGTGAGTGGGGGCCAGGCA < 41bp 0.812175942945462 0.582179452638136 0.8338398 0.25329936 prediction 0.459992980614654 Functional Loss - NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54609316 chr19:54609317 nonsynonymous SNV 0.990 0 22 hm5C_associated_SNPs_75003 0 0 1 0 2 NDUFA3 chr19:54609318 5'GT 54609318 Upstream 2bp
chr20 34021804 34021804 1 - C T COAD 34021807 - 34021787 34021827 41 ACCCACCTGCTGTGTGCCCACGCGGCTGAGTCCCATCAGCA ACCCACCTGCTGTGTGCCCACGCAGCTGAGTCCCATCAGCA < 41bp 0.764546497534987 0.534552701320108 0.31189704 0.0518983 prediction 0.459987592429759 Functional Loss - GDF5;GDF5OS ENSG00000125965 CDS Human protein_coding chr20:34021807 chr20:34021804 nonsynonymous SNV 0.960 4 24 hm5C_associated_SNPs_75005 0 0 0 0 1 GDF5;GDF5OS chr20:34021711 5'GT 34021711 Upstream 94bp
chr17 79968738 79968738 1 + G C UCEC 79968737 + 79968717 79968757 41 CAGGGCTTCTTCCGCCCCAGCGAGACAGGTGGGCAGCGCTG CAGGGCTTCTTCCGCCCCAGCCAGACAGGTGGGCAGCGCTG < 41bp 0.871595513758423 0.641602369931499 0.8708738 0.33191335 prediction 0.459986287653847 Functional Loss - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79968737 chr17:79968738 nonsynonymous SNV 0.828 4 22 hm5C_associated_SNPs_75006 0 0 1 0 2 ASPSCR1 chr17:79968678 3'AG 79968678 Downstream 61bp
chr17 79968738 79968738 1 + G C UCEC 79968737 + 79968717 79968757 41 CAGGGCTTCTTCCGCCCCAGCGAGACAGGTGGGCAGCGCTG CAGGGCTTCTTCCGCCCCAGCCAGACAGGTGGGCAGCGCTG < 41bp 0.871595513758423 0.641602369931499 0.8708738 0.33191335 prediction 0.459986287653847 Functional Loss - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79968737 chr17:79968738 nonsynonymous SNV 0.828 4 22 hm5C_associated_SNPs_75006 0 0 1 0 2 ASPSCR1 chr17:79968744 5'GT 79968744 Upstream 7bp
chr19 7743869 7743869 1 + C T rs113286748 7743867 + 7743847 7743887 41 GGAGGTGCTGCAGAAAATGCCACGTAAGTTGGCGCCCCGAC GGAGGTGCTGCAGAAAATGCCATGTAAGTTGGCGCCCCGAC < 41bp 0.729991803912846 0.486181089447776 0.29962447 0.26131812 prediction 0.459983607825692 Functional Loss - MCEMP1 ENSG00000183019;ENSG00000269711 CDS Human other chr19:7743867 chr19:7743869 stopgain 0.002 0 23 hm5C_associated_SNPs_75007 0 0 0 0 2 MCEMP1 chr19:7743810 3'AG 7743810 Downstream 60bp
chr19 7743869 7743869 1 + C T rs113286748 7743867 + 7743847 7743887 41 GGAGGTGCTGCAGAAAATGCCACGTAAGTTGGCGCCCCGAC GGAGGTGCTGCAGAAAATGCCATGTAAGTTGGCGCCCCGAC < 41bp 0.729991803912846 0.486181089447776 0.29962447 0.26131812 prediction 0.459983607825692 Functional Loss - MCEMP1 ENSG00000183019;ENSG00000269711 CDS Human other chr19:7743867 chr19:7743869 stopgain 0.002 0 23 hm5C_associated_SNPs_75007 0 0 0 0 2 MCEMP1 chr19:7743869 5'GT 7743869 Upstream 1bp
chr11 65688806 65688806 1 + C T SKCM 65688804 + 65688784 65688824 41 TGCCTTCTGCCCTGCAGCCCCCCGACACCCTTCCTGCCCTT TGCCTTCTGCCCTGCAGCCCCCTGACACCCTTCCTGCCCTT < 41bp 0.788317031749421 0.558329476451684 0.28530926 0.20796725 prediction 0.459975110595475 Functional Loss - DRAP1 ENSG00000175550 CDS Human protein_coding chr11:65688804 chr11:65688806 nonsynonymous SNV 0.592 0 23 hm5C_associated_SNPs_75012 0 0 1 0 1 DRAP1 chr11:65688801 3'AG 65688801 Downstream 6bp
chrX 140983153 140983153 1 + G A SARC 140983150 + 140983130 140983170 41 TTTTGCGAGGAGTCTGGACTCAGGTCAGCAGAGGGAAGCGT TTTTGCGAGGAGTCTGGACTCAGATCAGCAGAGGGAAGCGT < 41bp 0.763952387288971 0.533966149650859 0.8471782 0.8288513 prediction 0.459972475276226 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140983150 chrX:140983153 synonymous SNV . 0 24 hm5C_associated_SNPs_75013 0 0 0 0 2 MAGEC3 chrX:140983055 3'AG 140983055 Downstream 99bp
chrX 140983153 140983153 1 + G A SARC 140983150 + 140983130 140983170 41 TTTTGCGAGGAGTCTGGACTCAGGTCAGCAGAGGGAAGCGT TTTTGCGAGGAGTCTGGACTCAGATCAGCAGAGGGAAGCGT < 41bp 0.763952387288971 0.533966149650859 0.8471782 0.8288513 prediction 0.459972475276226 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140983150 chrX:140983153 synonymous SNV . 0 24 hm5C_associated_SNPs_75013 0 0 0 0 2 MAGEC3 chrX:140983193 5'GT 140983193 Upstream 41bp
chr2 220396815 220396815 1 + G T UCEC 220396813 + 220396793 220396833 41 GCTGGGGTTCGGGGTGTCCCCAGGCTTCCAGACCTTTGTGT GCTGGGGTTCGGGGTGTCCCCATGCTTCCAGACCTTTGTGT < 41bp 0.899063812467752 0.669078231997057 0.919852 0.7788925 prediction 0.459971160941391 Functional Loss - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220396813 chr2:220396815 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_75014 0 0 1 0 2 ASIC4 chr2:220396723 3'AG 220396723 Downstream 93bp
chr2 220396815 220396815 1 + G T UCEC 220396813 + 220396793 220396833 41 GCTGGGGTTCGGGGTGTCCCCAGGCTTCCAGACCTTTGTGT GCTGGGGTTCGGGGTGTCCCCATGCTTCCAGACCTTTGTGT < 41bp 0.899063812467752 0.669078231997057 0.919852 0.7788925 prediction 0.459971160941391 Functional Loss - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220396813 chr2:220396815 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_75014 0 0 1 0 2 ASIC4 chr2:220396850 5'GT 220396850 Upstream 36bp
chr19 49983671 49983671 1 + G A UCEC 49983668 + 49983648 49983688 41 TGCCCGTGGGCCTCCTGCTGCTGGCCGCTGCCTGGTGCCTG TGCCCGTGGGCCTCCTGCTGCTGACCGCTGCCTGGTGCCTG < 41bp 0.729984674819026 0.476356460053246 0.13691002 0.11767903 prediction 0.459969349638052 Functional Loss - FLT3LG ENSG00000090554 CDS Human protein_coding chr19:49983668 chr19:49983671 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_75015 0 0 1 0 1 FLT3LG chr19:49983733 5'GT 49983733 Upstream 63bp
chr2 219294367 219294367 1 + G A rs554885061 219294364 + 219294344 219294384 41 GGTGGTGAGGGAAGTCGCCACACGGCCACTGACACAGGACC GGTGGTGAGGGAAGTCGCCACACAGCCACTGACACAGGACC < 41bp 0.729982008617646 0.475553539867889 0.6973255 0.24433848 prediction 0.459964017235291 Functional Loss - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219294364 chr2:219294367 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_75017 0 0 0 0 1 VIL1 chr2:219294398 5'GT 219294398 Upstream 32bp
chr2 219294366 219294366 1 + C T HNSC 219294364 + 219294344 219294384 41 GGTGGTGAGGGAAGTCGCCACACGGCCACTGACACAGGACC GGTGGTGAGGGAAGTCGCCACATGGCCACTGACACAGGACC < 41bp 0.729982008617646 0.466545893371957 0.6973255 0.57494307 prediction 0.459964017235291 Functional Loss - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219294364 chr2:219294366 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_75018 0 0 0 0 1 VIL1 chr2:219294398 5'GT 219294398 Upstream 33bp
chr9 131742985 131742985 1 + G A SKCM 131742982 + 131742962 131743002 41 ACTGCTCCGAGCCCTGGTATCAGGGAAGTCCACAGCCAAAA ACTGCTCCGAGCCCTGGTATCAGAGAAGTCCACAGCCAAAA < 41bp 0.762553687883394 0.532575205213995 0.94213545 0.92799187 prediction 0.459956965338797 Functional Loss - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131742982 chr9:131742985 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_75019 0 0 1 0 1 NUP188 chr9:131743004 5'GT 131743004 Upstream 20bp
chrX 70386939 70386939 1 + C T UCEC 70386937 + 70386917 70386957 41 AACTACCAACCAGTGAAGTACACCAGCCTGCTGGCAGACAA AACTACCAACCAGTGAAGTACATCAGCCTGCTGGCAGACAA < 41bp 0.72996327020868 0.434560262740935 0.3552717 0.5150205 prediction 0.45992654041736 Functional Loss - NLGN3 ENSG00000196338 CDS Human protein_coding chrX:70386937 chrX:70386939 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_75023 0 0 0 0 1 NLGN3 chrX:70386861 3'AG 70386861 Downstream 79bp
chr17 64873620 64873620 1 + G A STAD 64873617 + 64873597 64873637 41 GATCAAGATGTCCCTGCACTCAGGCCTCTGGCGGGTCTGCT GATCAAGATGTCCCTGCACTCAGACCTCTGGCGGGTCTGCT < 41bp 0.729961307667233 0.488327820024639 0.90352523 0.7030494 prediction 0.459922615334466 Functional Loss - CACNG5 ENSG00000075429 CDS Human protein_coding chr17:64873617 chr17:64873620 nonsynonymous SNV 0.994 5 24 hm5C_associated_SNPs_75024 0 0 0 0 1 CACNG5 chr17:64873646 5'GT 64873646 Upstream 27bp
chr9 101589095 101589095 1 + C T BRCA 101589093 + 101589073 101589113 41 TGCCCAAGGTGCGCCTGATCCGCGCCAACAAGAGAGAGGGC TGCCCAAGGTGCGCCTGATCCGTGCCAACAAGAGAGAGGGC < 41bp 0.832969815291388 0.603012380723895 0.5958634 0.26179498 prediction 0.459914869134985 Functional Loss - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101589093 chr9:101589095 synonymous SNV . 0 23 hm5C_associated_SNPs_75028 0 0 1 0 1 GALNT12 chr9:101589034 3'AG 101589034 Downstream 62bp
chr1 160141149 160141149 1 + G A SKCM 160141146 + 160141126 160141166 41 CTACCTTTCTTCTGAATGGGCAGGAGTACTCAATGAACGAT CTACCTTTCTTCTGAATGGGCAGAAGTACTCAATGAACGAT < 41bp 0.729957232978125 0.485838360647796 0.7555618 0.7789347 prediction 0.45991446595625 Functional Loss - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160141146 chr1:160141149 nonsynonymous SNV 0.067 2 24 hm5C_associated_SNPs_75029 0 0 0 0 1 ATP1A4 chr1:160141230 5'GT 160141230 Upstream 82bp
chrX 37514951 37514951 1 + C T BLCA 37514948 + 37514928 37514968 41 TTTCCTTATTCAGGTGCTGACTCCAGCACAGATCAAGTCAA TTTCCTTATTCAGGTGCTGACTCTAGCACAGATCAAGTCAA < 41bp 0.729951113889707 0.498970864723194 0.92929184 0.61687195 prediction 0.459902227779413 Functional Loss - LANCL3 ENSG00000147036 CDS Human protein_coding chrX:37514948 chrX:37514951 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_75033 0 0 0 0 1 LANCL3 chrX:37514941 3'AG 37514941 Downstream 11bp
chr9 131348188 131348188 1 + G T CESC 131348185 + 131348165 131348205 41 ACGAGGCTGAATCCTGGATGCGGGAGAAGGAACCCATTGTG ACGAGGCTGAATCCTGGATGCGGTAGAAGGAACCCATTGTG < 41bp 0.729949701557505 0.371624025197643 0.9070567 0.8322209 prediction 0.45989940311501 Functional Loss - SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131348185 chr9:131348188 stopgain 1.000 1 24 hm5C_associated_SNPs_75034 0 0 1 0 1 SPTAN1 chr9:131348244 5'GT 131348244 Upstream 57bp
chr22 39474962 39474962 1 + G A LUSC 39474959 + 39474939 39474979 41 ACACAGTGGAGCGAATGTATCGAGACACATTCTCCTACAAC ACACAGTGGAGCGAATGTATCGAAACACATTCTCCTACAAC < 41bp 0.758820953152932 0.528873156382773 0.8868532 0.67348623 prediction 0.459895593540318 Functional Loss - APOBEC3G ENSG00000239713 CDS Human protein_coding chr22:39474959 chr22:39474962 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_75036 0 0 0 0 1 APOBEC3G chr22:39474937 3'AG 39474937 Downstream 26bp
chr19 14517156 14517156 1 + G T KIRP 14517154 + 14517134 14517174 41 GCCCCGCAGGTGGGGCTGCGCTGCCGCCTGGTGGCCGGGCT GCCCCGCAGGTGGGGCTGCGCTTCCGCCTGGTGGCCGGGCT < 41bp 0.729942261644055 0.372925790892611 0.051334083 0.06591511 prediction 0.459884523288109 Functional Loss - ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14517154 chr19:14517156 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_75040 0 0 1 0 1 ADGRE5 chr19:14517143 3'AG 14517143 Downstream 14bp
chr3 142388320 142388320 1 + C T HNSC 142388318 + 142388298 142388338 41 CTCTGCCTGGCTACAAGGTGCGCGAGATTGTGGAGAAAATT CTCTGCCTGGCTACAAGGTGCGTGAGATTGTGGAGAAAATT < 41bp 0.729940639208371 0.441542958719173 0.44516408 0.14781523 prediction 0.459881278416741 Functional Loss - PLS1 ENSG00000120756 CDS Human protein_coding chr3:142388318 chr3:142388320 synonymous SNV . 0 23 hm5C_associated_SNPs_75042 0 0 0 0 2 PLS1 chr3:142388232 3'AG 142388232 Downstream 89bp
chr3 142388320 142388320 1 + C T HNSC 142388318 + 142388298 142388338 41 CTCTGCCTGGCTACAAGGTGCGCGAGATTGTGGAGAAAATT CTCTGCCTGGCTACAAGGTGCGTGAGATTGTGGAGAAAATT < 41bp 0.729940639208371 0.441542958719173 0.44516408 0.14781523 prediction 0.459881278416741 Functional Loss - PLS1 ENSG00000120756 CDS Human protein_coding chr3:142388318 chr3:142388320 synonymous SNV . 0 23 hm5C_associated_SNPs_75042 0 0 0 0 2 PLS1 chr3:142388395 5'GT 142388395 Upstream 76bp
chr2 189869062 189869062 1 + G A SKCM 189869059 + 189869039 189869079 41 ACCACCAGGCATGCCAGGTCCTAGGGGAAGCCCTGGCCCTC ACCACCAGGCATGCCAGGTCCTAAGGGAAGCCCTGGCCCTC < 41bp 0.779994170592328 0.550056256938269 0.90670836 0.53140867 prediction 0.459875827308118 Functional Loss - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189869059 chr2:189869062 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_75043 0 0 0 0 2 COL3A1 chr2:189868983 3'AG 189868983 Downstream 80bp
chr2 189869062 189869062 1 + G A SKCM 189869059 + 189869039 189869079 41 ACCACCAGGCATGCCAGGTCCTAGGGGAAGCCCTGGCCCTC ACCACCAGGCATGCCAGGTCCTAAGGGAAGCCCTGGCCCTC < 41bp 0.779994170592328 0.550056256938269 0.90670836 0.53140867 prediction 0.459875827308118 Functional Loss - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189869059 chr2:189869062 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_75043 0 0 0 0 2 COL3A1 chr2:189869090 5'GT 189869090 Upstream 29bp
chr2 11534232 11534232 1 + A C rs73177297 11534231 + 11534211 11534251 41 GCAGCAGGGGGATCAACGAACAGGCTGAGCGCCAAGAAGCC GCAGCAGGGGGATCAACGAACCGGCTGAGCGCCAAGAAGCC < 41bp 0.729937096326043 0.496077814642158 0.5408986 0.3421285 prediction 0.459874192652086 Functional Loss - LINC00570 ENSG00000224177 ncRNA_exonic Human lincRNA chr2:11534231 chr2:11534232 . . 0 22 hm5C_associated_SNPs_75044 0 0 0 0 1 LINC00570 chr2:11534297 5'GT 11534297 Upstream 66bp
chr9 35607978 35607978 1 + T C rs7018639 35607977 + 35607957 35607997 41 TGAGCTCATCGCCCGAGTACCTGCAGACCCTGACTACCTAC TGAGCTCATCGCCCGAGTACCCGCAGACCCTGACTACCTAC < 41bp 0.729933292810456 0.465009862558481 0.5537188 0.15969318 prediction 0.459866585620911 Functional Loss - TESK1 ENSG00000107140 CDS Human protein_coding chr9:35607977 chr9:35607978 synonymous SNV . 0 22 hm5C_associated_SNPs_75047 0 0 1 2 2 TESK1 chr9:35607925 3'AG 35607925 Downstream 54bp
chr9 35607978 35607978 1 + T C rs7018639 35607977 + 35607957 35607997 41 TGAGCTCATCGCCCGAGTACCTGCAGACCCTGACTACCTAC TGAGCTCATCGCCCGAGTACCCGCAGACCCTGACTACCTAC < 41bp 0.729933292810456 0.465009862558481 0.5537188 0.15969318 prediction 0.459866585620911 Functional Loss - TESK1 ENSG00000107140 CDS Human protein_coding chr9:35607977 chr9:35607978 synonymous SNV . 0 22 hm5C_associated_SNPs_75047 0 0 1 2 2 TESK1 chr9:35608008 5'GT 35608008 Upstream 31bp
chr1 207647034 207647034 1 + G A SKCM 207647031 + 207647011 207647051 41 ATCCATTCACTGTATGCCTTCAGGAAATTGGAGTCCTTCTG ATCCATTCACTGTATGCCTTCAGAAAATTGGAGTCCTTCTG < 41bp 0.766280703384906 0.536347560798555 0.8728646 0.5043827 prediction 0.459866285172703 Functional Loss - CR2 ENSG00000117322 CDS Human protein_coding chr1:207647031 chr1:207647034 nonsynonymous SNV 0.319 2 24 hm5C_associated_SNPs_75048 0 0 0 0 1 CR2 chr1:207647066 5'GT 207647066 Upstream 33bp
chr9 136412255 136412255 1 + A C rs2073876 136412254 + 136412234 136412274 41 GCAGGCACGGTGGTCAAGTACAGGCGGCCCATGGATGTCTA GCAGGCACGGTGGTCAAGTACCGGCGGCCCATGGATGTCTA < 41bp 0.729928052912599 0.459562404978974 0.4893569 0.8430074 prediction 0.459856105825197 Functional Loss - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136412254 chr9:136412255 synonymous SNV . 0 22 hm5C_associated_SNPs_75051 1 0 0 0 2 ADAMTSL2 chr9:136412160 3'AG 136412160 Downstream 96bp
chr9 136412255 136412255 1 + A C rs2073876 136412254 + 136412234 136412274 41 GCAGGCACGGTGGTCAAGTACAGGCGGCCCATGGATGTCTA GCAGGCACGGTGGTCAAGTACCGGCGGCCCATGGATGTCTA < 41bp 0.729928052912599 0.459562404978974 0.4893569 0.8430074 prediction 0.459856105825197 Functional Loss - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136412254 chr9:136412255 synonymous SNV . 0 22 hm5C_associated_SNPs_75051 1 0 0 0 2 ADAMTSL2 chr9:136412335 5'GT 136412335 Upstream 81bp
chr9 136412257 136412257 1 + G T UCEC 136412254 + 136412234 136412274 41 GCAGGCACGGTGGTCAAGTACAGGCGGCCCATGGATGTCTA GCAGGCACGGTGGTCAAGTACAGTCGGCCCATGGATGTCTA < 41bp 0.729928052912599 0.319072263313856 0.4893569 0.18882522 prediction 0.459856105825197 Functional Loss - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136412254 chr9:136412257 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_75052 0 0 0 0 2 ADAMTSL2 chr9:136412160 3'AG 136412160 Downstream 98bp
chr9 136412257 136412257 1 + G T UCEC 136412254 + 136412234 136412274 41 GCAGGCACGGTGGTCAAGTACAGGCGGCCCATGGATGTCTA GCAGGCACGGTGGTCAAGTACAGTCGGCCCATGGATGTCTA < 41bp 0.729928052912599 0.319072263313856 0.4893569 0.18882522 prediction 0.459856105825197 Functional Loss - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136412254 chr9:136412257 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_75052 0 0 0 0 2 ADAMTSL2 chr9:136412335 5'GT 136412335 Upstream 79bp
chr19 55247323 55247323 1 + G T UCEC 55247321 + 55247301 55247341 41 GACCAAGAGCCTGCAGGGAACAGAACAGTGAACAGGGAGGT GACCAAGAGCCTGCAGGGAACATAACAGTGAACAGGGAGGT < 41bp 0.72991839559523 0.382309480846566 0.37388408 0.26896846 prediction 0.45983679119046 Functional Loss - KIR3DL3 ENSG00000242019 CDS Human protein_coding chr19:55247321 chr19:55247323 nonsynonymous SNV 0.014 1 23 hm5C_associated_SNPs_75055 0 0 0 0 2 KIR3DL3 chr19:55247287 3'AG 55247287 Downstream 37bp
chr19 55247323 55247323 1 + G T UCEC 55247321 + 55247301 55247341 41 GACCAAGAGCCTGCAGGGAACAGAACAGTGAACAGGGAGGT GACCAAGAGCCTGCAGGGAACATAACAGTGAACAGGGAGGT < 41bp 0.72991839559523 0.382309480846566 0.37388408 0.26896846 prediction 0.45983679119046 Functional Loss - KIR3DL3 ENSG00000242019 CDS Human protein_coding chr19:55247321 chr19:55247323 nonsynonymous SNV 0.014 1 23 hm5C_associated_SNPs_75055 0 0 0 0 2 KIR3DL3 chr19:55247339 5'GT 55247339 Upstream 17bp
chr16 31121625 31121625 1 + G A BRCA 31121622 + 31121602 31121642 41 CCCTCTTGGCAGAGGGCCTACGTGAGAGCCGGAAGCACATA CCCTCTTGGCAGAGGGCCTACGTAAGAGCCGGAAGCACATA < 41bp 0.757768321207504 0.527855025384168 0.41968346 0.33681327 prediction 0.459826591646673 Functional Loss - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31121622 chr16:31121625 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_75058 0 0 1 3 2 BCKDK chr16:31121526 3'AG 31121526 Downstream 100bp
chr16 31121625 31121625 1 + G A BRCA 31121622 + 31121602 31121642 41 CCCTCTTGGCAGAGGGCCTACGTGAGAGCCGGAAGCACATA CCCTCTTGGCAGAGGGCCTACGTAAGAGCCGGAAGCACATA < 41bp 0.757768321207504 0.527855025384168 0.41968346 0.33681327 prediction 0.459826591646673 Functional Loss - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31121622 chr16:31121625 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_75058 0 0 1 3 2 BCKDK chr16:31121645 5'GT 31121645 Upstream 21bp
chr5 137521329 137521329 1 + C T STAD 137521326 + 137521306 137521346 41 CAAAGGTTGGCAGCTTCTGCCTCCACCCAGCAGCTTCAGGA CAAAGGTTGGCAGCTTCTGCCTCTACCCAGCAGCTTCAGGA < 41bp 0.750337533410898 0.520428588902662 0.9119617 0.8490677 prediction 0.459817889016473 Functional Loss - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137521326 chr5:137521329 synonymous SNV . 0 24 hm5C_associated_SNPs_75059 0 0 1 0 1 KIF20A chr5:137521399 5'GT 137521399 Upstream 71bp
chr12 113730818 113730818 1 + G C GBM 113730814 + 113730794 113730834 41 CCTGGAGCTCTACCGGGAGGCACGGGGGGCCTCCTCGGATG CCTGGAGCTCTACCGGGAGGCACGCGGGGCCTCCTCGGATG < 41bp 0.856746390120968 0.626837736454906 0.91957176 0.33429176 prediction 0.459817307332124 Functional Loss - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113730814 chr12:113730818 synonymous SNV . 0 25 hm5C_associated_SNPs_75060 0 0 1 0 2 TPCN1 chr12:113730739 3'AG 113730739 Downstream 80bp
chr12 113730818 113730818 1 + G C GBM 113730814 + 113730794 113730834 41 CCTGGAGCTCTACCGGGAGGCACGGGGGGCCTCCTCGGATG CCTGGAGCTCTACCGGGAGGCACGCGGGGCCTCCTCGGATG < 41bp 0.856746390120968 0.626837736454906 0.91957176 0.33429176 prediction 0.459817307332124 Functional Loss - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113730814 chr12:113730818 synonymous SNV . 0 25 hm5C_associated_SNPs_75060 0 0 1 0 2 TPCN1 chr12:113730878 5'GT 113730878 Upstream 61bp
chr5 224575 224575 1 + G A CESC 224572 + 224552 224592 41 TGCATTTGGCCTTTCTGAGGCAGGGTTTAATACAGCATGTG TGCATTTGGCCTTTCTGAGGCAGAGTTTAATACAGCATGTG < 41bp 0.775266686886959 0.545359454650837 0.84935164 0.5811175 prediction 0.459814464472245 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:224572 chr5:224575 nonsynonymous SNV 0.740 4 24 hm5C_associated_SNPs_75063 0 0 1 0 1 SDHA chr5:224636 5'GT 224636 Upstream 62bp
chr11 70221118 70221118 1 + C T rs142482070 70221116 + 70221096 70221136 41 ATCTTATAGAGAGTGGTGTTCACGGAGCACTTCTGGCCTTA ATCTTATAGAGAGTGGTGTTCATGGAGCACTTCTGGCCTTA < 41bp 0.729902705230607 0.45766663734584 0.5888234 0.41598848 prediction 0.459805410461214 Functional Loss - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70221116 chr11:70221118 synonymous SNV . 0 23 hm5C_associated_SNPs_75066 0 0 1 0 2 PPFIA1 chr11:70221024 3'AG 70221024 Downstream 95bp
chr11 70221118 70221118 1 + C T rs142482070 70221116 + 70221096 70221136 41 ATCTTATAGAGAGTGGTGTTCACGGAGCACTTCTGGCCTTA ATCTTATAGAGAGTGGTGTTCATGGAGCACTTCTGGCCTTA < 41bp 0.729902705230607 0.45766663734584 0.5888234 0.41598848 prediction 0.459805410461214 Functional Loss - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70221116 chr11:70221118 synonymous SNV . 0 23 hm5C_associated_SNPs_75066 0 0 1 0 2 PPFIA1 chr11:70221199 5'GT 70221199 Upstream 82bp
chr10 133958653 133958653 1 + C T COAD 133958651 + 133958631 133958671 41 CGAAGTGCAGAGGGCACAGGCGCGGATAGAGGACCTGGAGA CGAAGTGCAGAGGGCACAGGCGTGGATAGAGGACCTGGAGA < 41bp 0.814038415560105 0.584138060218548 0.45560664 0.5812033 prediction 0.459800710683115 Functional Loss - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133958651 chr10:133958653 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_75068 0 0 0 0 2 JAKMIP3 chr10:133958611 3'AG 133958611 Downstream 43bp
chr10 133958653 133958653 1 + C T COAD 133958651 + 133958631 133958671 41 CGAAGTGCAGAGGGCACAGGCGCGGATAGAGGACCTGGAGA CGAAGTGCAGAGGGCACAGGCGTGGATAGAGGACCTGGAGA < 41bp 0.814038415560105 0.584138060218548 0.45560664 0.5812033 prediction 0.459800710683115 Functional Loss - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133958651 chr10:133958653 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_75068 0 0 0 0 2 JAKMIP3 chr10:133958694 5'GT 133958694 Upstream 42bp
chr15 40568251 40568251 1 + G A UCEC 40568248 + 40568228 40568268 41 AGACAGGGCTACCTGAGTGCCTGGTGCCCCTGATCCAGCTC AGACAGGGCTACCTGAGTGCCTGATGCCCCTGATCCAGCTC < 41bp 0.729899118626056 0.496793553755232 0.6755336 0.3541534 prediction 0.459798237252112 Functional Loss - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human other chr15:40568248 chr15:40568251 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_75069 0 0 0 0 1 BUB1B-PAK6;PAK6 chr15:40568306 5'GT 40568306 Upstream 56bp
chr20 42271137 42271137 1 + A T UCEC 42271133 + 42271113 42271153 41 TCTTAGGTACTGAAGAAGACCTGGAATTTTATGTCAGGAAG TCTTAGGTACTGAAGAAGACCTGGTATTTTATGTCAGGAAG < 41bp 0.729896396944438 0.411357723538957 0.27369586 0.290241 prediction 0.459792793888876 Functional Loss - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42271133 chr20:42271137 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_75071 0 0 1 0 1 IFT52 chr20:42271119 3'AG 42271119 Downstream 19bp
chr9 132963244 132963244 1 + G A UCEC 132963241 + 132963221 132963261 41 CTGCTTTCTCTTGCAGTTACCGAGAAGGAGGTCCAGCAGTG CTGCTTTCTCTTGCAGTTACCGAAAAGGAGGTCCAGCAGTG < 41bp 0.729895014296503 0.487352826570395 0.887977 0.45388523 prediction 0.459790028593007 Functional Loss - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132963241 chr9:132963244 synonymous SNV . 0 24 hm5C_associated_SNPs_75072 0 0 0 0 2 NCS1 chr9:132963237 3'AG 132963237 Downstream 8bp
chr9 132963244 132963244 1 + G A UCEC 132963241 + 132963221 132963261 41 CTGCTTTCTCTTGCAGTTACCGAGAAGGAGGTCCAGCAGTG CTGCTTTCTCTTGCAGTTACCGAAAAGGAGGTCCAGCAGTG < 41bp 0.729895014296503 0.487352826570395 0.887977 0.45388523 prediction 0.459790028593007 Functional Loss - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132963241 chr9:132963244 synonymous SNV . 0 24 hm5C_associated_SNPs_75072 0 0 0 0 2 NCS1 chr9:132963261 5'GT 132963261 Upstream 18bp
chr3 40518821 40518821 1 + G A rs9882171 40518818 + 40518798 40518838 41 CGCCCTCGACCTTCCTGCTCCGAGGAGCTGGCCTGATGTCC CGCCCTCGACCTTCCTGCTCCGAAGAGCTGGCCTGATGTCC < 41bp 0.74598565279962 0.51609325009642 0.8393171 0.25095278 prediction 0.4597848054064 Functional Loss - ZNF619 ENSG00000177873 UTR5 Human protein_coding chr3:40518818 chr3:40518821 . . 0 24 hm5C_associated_SNPs_75075 0 0 0 0 1 ZNF619 chr3:40518848 5'GT 40518848 Upstream 28bp
chr19 6820818 6820818 1 + G A SKCM 6820815 + 6820795 6820835 41 CCTTTGACCTCTTCGATGTGCAGGATTTTGGCAAGGTGAGC CCTTTGACCTCTTCGATGTGCAGAATTTTGGCAAGGTGAGC < 41bp 0.760235738555792 0.530343826119839 0.19319993 0.11862695 prediction 0.459783824871907 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6820815 chr19:6820818 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_75076 0 0 0 0 1 VAV1 chr19:6820829 5'GT 6820829 Upstream 12bp
chr16 58538528 58538528 1 + G A BLCA 58538525 + 58538505 58538545 41 GATTGGCATCGGAGTGGGCGCCGGAGCCTATGTGCTGGCCA GATTGGCATCGGAGTGGGCGCCGAAGCCTATGTGCTGGCCA < 41bp 0.729890224572482 0.486045023799661 0.87490964 0.47455934 prediction 0.459780449144964 Functional Loss - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58538525 chr16:58538528 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_75078 0 0 0 0 2 NDRG4 chr16:58538493 3'AG 58538493 Downstream 36bp
chr16 58538528 58538528 1 + G A BLCA 58538525 + 58538505 58538545 41 GATTGGCATCGGAGTGGGCGCCGGAGCCTATGTGCTGGCCA GATTGGCATCGGAGTGGGCGCCGAAGCCTATGTGCTGGCCA < 41bp 0.729890224572482 0.486045023799661 0.87490964 0.47455934 prediction 0.459780449144964 Functional Loss - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58538525 chr16:58538528 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_75078 0 0 0 0 2 NDRG4 chr16:58538553 5'GT 58538553 Upstream 26bp
chr9 139252516 139252516 1 + G T SKCM 139252514 + 139252494 139252534 41 CGCCACCTGACGTACTGCCCCGGGGCCCTACCATGCCGGAC CGCCACCTGACGTACTGCCCCGTGGCCCTACCATGCCGGAC < 41bp 0.729886952876219 0.383068637904663 0.91479605 0.14674717 prediction 0.459773905752439 Functional Loss - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139252514 chr9:139252516 synonymous SNV . 0 23 hm5C_associated_SNPs_75080 0 0 0 0 1 GPSM1 chr9:139252466 3'AG 139252466 Downstream 51bp
chr20 31889150 31889150 1 + G A rs34548457 31889147 + 31889127 31889167 41 CGTTCAGCCTCATCGTGAGTCAGGACGTGGTGAAAGCTGCA CGTTCAGCCTCATCGTGAGTCAGAACGTGGTGAAAGCTGCA < 41bp 0.756702719104219 0.526817071046381 0.38913044 0.093494326 prediction 0.459771296115676 Functional Loss - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31889147 chr20:31889150 nonsynonymous SNV 0.085 4 24 hm5C_associated_SNPs_75081 0 0 0 0 1 BPIFB1 chr20:31889218 5'GT 31889218 Upstream 69bp
chr16 31139397 31139397 1 + C T LUSC 31139395 + 31139375 31139415 41 AGTGCCAGTGGCGGCAGCCCCCCGGGAAAGAGATCTACCGC AGTGCCAGTGGCGGCAGCCCCCTGGGAAAGAGATCTACCGC < 41bp 0.830674646510633 0.600791944349379 0.21555248 0.14957413 prediction 0.459765404322508 Functional Loss - KAT8 ENSG00000103510 CDS Human protein_coding chr16:31139395 chr16:31139397 synonymous SNV . 0 23 hm5C_associated_SNPs_75082 0 0 1 0 1 KAT8 chr16:31139460 5'GT 31139460 Upstream 64bp
chr3 39180260 39180260 1 + G A PRAD 39180257 + 39180237 39180277 41 GGAGGAAATTTTGGAAAAGGCCCGAAGGTCCCTGAGGCCCT GGAGGAAATTTTGGAAAAGGCCCAAAGGTCCCTGAGGCCCT < 41bp 0.72988218660985 0.49609332571769 0.25851196 0.19060457 prediction 0.459764373219701 Functional Loss - TTC21A ENSG00000168026 CDS Human protein_coding chr3:39180257 chr3:39180260 nonsynonymous SNV 0.980 0 24 hm5C_associated_SNPs_75083 0 0 0 0 1 TTC21A chr3:39180202 3'AG 39180202 Downstream 59bp
chr19 36123999 36123999 1 + G T COAD 36123997 + 36123977 36124017 41 AGATTCCGCTCTCTCCTCTGCAGCAGCCGGCCCCCGCCCTA AGATTCCGCTCTCTCCTCTGCATCAGCCGGCCCCCGCCCTA < 41bp 0.905640147006314 0.675759488316172 0.43083823 0.16085657 prediction 0.459761317380283 Functional Loss - RBM42;RBM42 ENSG00000126254;ENSG00000126254 exonic;splicing Human protein_coding chr19:36123997 chr19:36123999 nonsynonymous SNV 0.967 3 23 hm5C_associated_SNPs_75084 0 0 0 0 1 RBM42 chr19:36123979 3'AG 36123979 Downstream 21bp
chr15 76206487 76206487 1 + T C UCEC 76206486 + 76206466 76206506 41 GTATGGAAACAGCACTTGCCCTTGAGAAGCTATTCCCCAAA GTATGGAAACAGCACTTGCCCCTGAGAAGCTATTCCCCAAA < 41bp 0.79135025758597 0.561472644707354 0.046105504 0.065932214 prediction 0.459755225757232 Functional Loss - FBXO22 ENSG00000167196 CDS Human protein_coding chr15:76206486 chr15:76206487 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_75086 0 0 1 0 2 FBXO22 chr15:76206451 3'AG 76206451 Downstream 37bp
chr15 76206487 76206487 1 + T C UCEC 76206486 + 76206466 76206506 41 GTATGGAAACAGCACTTGCCCTTGAGAAGCTATTCCCCAAA GTATGGAAACAGCACTTGCCCCTGAGAAGCTATTCCCCAAA < 41bp 0.79135025758597 0.561472644707354 0.046105504 0.065932214 prediction 0.459755225757232 Functional Loss - FBXO22 ENSG00000167196 CDS Human protein_coding chr15:76206486 chr15:76206487 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_75086 0 0 1 0 2 FBXO22 chr15:76206546 5'GT 76206546 Upstream 60bp
chr15 75122526 75122526 1 + G A GBM 75122523 + 75122503 75122543 41 AGGTGGAGACGTGGAGCTGCCCCGGGAGCTGGCCAAGATGA AGGTGGAGACGTGGAGCTGCCCCAGGAGCTGGCCAAGATGA < 41bp 0.758192024183281 0.528324799986844 0.29640397 0.2786318 prediction 0.459734448392874 Functional Loss - CPLX3 ENSG00000213578 CDS Human protein_coding chr15:75122523 chr15:75122526 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_75089 0 0 0 0 1 CPLX3 chr15:75122471 3'AG 75122471 Downstream 56bp
chr14 31139516 31139516 1 + C T SKCM 31139514 + 31139494 31139534 41 ATCTTCAGGAGTGGAAAACTCTCCAGCTGGTGCTAGACCAA ATCTTCAGGAGTGGAAAACTCTTCAGCTGGTGCTAGACCAA < 41bp 0.865846125371498 0.635981535272669 0.9338746 0.31471673 prediction 0.459729180197658 Functional Loss - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31139514 chr14:31139516 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_75091 0 0 1 0 2 SCFD1 chr14:31139462 3'AG 31139462 Downstream 55bp
chr14 31139516 31139516 1 + C T SKCM 31139514 + 31139494 31139534 41 ATCTTCAGGAGTGGAAAACTCTCCAGCTGGTGCTAGACCAA ATCTTCAGGAGTGGAAAACTCTTCAGCTGGTGCTAGACCAA < 41bp 0.865846125371498 0.635981535272669 0.9338746 0.31471673 prediction 0.459729180197658 Functional Loss - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31139514 chr14:31139516 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_75091 0 0 1 0 2 SCFD1 chr14:31139601 5'GT 31139601 Upstream 86bp
chr22 24999249 24999249 1 + G A rs73404982 24999246 + 24999226 24999266 41 GTGCCCCAGTGCTGTGTGACCCAGAGGCGCCGCTCACCCTC GTGCCCCAGTGCTGTGTGACCCAAAGGCGCCGCTCACCCTC < 41bp 0.729863867105488 0.487905043412645 0.9065974 0.8454238 prediction 0.459727734210977 Functional Loss - GGT1 ENSG00000100031 UTR5 Human protein_coding chr22:24999246 chr22:24999249 . . 0 24 hm5C_associated_SNPs_75092 0 0 1 0 1 GGT1 chr22:24999288 5'GT 24999288 Upstream 40bp
chr19 758707 758707 1 + G A SKCM 758704 + 758684 758724 41 GAGAACTCTGACCAGAACTCCAGGAGCTCCTCCCAGGCATC GAGAACTCTGACCAGAACTCCAGAAGCTCCTCCCAGGCATC < 41bp 0.788815753141317 0.558953488375386 0.901188 0.7805938 prediction 0.459724529531863 Functional Loss - MISP ENSG00000099812 CDS Human protein_coding chr19:758704 chr19:758707 synonymous SNV . 0 24 hm5C_associated_SNPs_75093 0 0 0 0 1 MISP chr19:758726 5'GT 758726 Upstream 20bp
chr11 5686527 5686527 1 - G A UCEC 5686529 - 5686509 5686549 41 ACCACAGATAATATATGGGGCACGAGGGACAAGATACCAGA ACCACAGATAATATATGGGGCATGAGGGACAAGATACCAGA < 41bp 0.780902526884692 0.551047551373088 0.10145116 0.13709378 prediction 0.459709951023208 Functional Loss - TRIM5 ENSG00000132256 CDS Human protein_coding chr11:5686529 chr11:5686527 stopgain 0.000 0 23 hm5C_associated_SNPs_75096 0 0 0 0 1 TRIM5 chr11:5686625 3'AG 5686625 Downstream 99bp
chr1 8395549 8395549 1 + C T BLCA 8395547 + 8395527 8395567 41 TATGAGAGCGAGCTGACGGGCTCCAGCGAGCGCGCGGAGCA TATGAGAGCGAGCTGACGGGCTTCAGCGAGCGCGCGGAGCA < 41bp 0.847979935417431 0.618125839977276 0.46041647 0.23432425 prediction 0.45970819088031 Functional Loss - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8395547 chr1:8395549 nonsynonymous SNV 0.458 2 23 hm5C_associated_SNPs_75097 0 0 0 0 1 SLC45A1 chr1:8395497 3'AG 8395497 Downstream 53bp
chr10 118957199 118957199 1 + G T GBM 118957197 + 118957177 118957217 41 AAGTTCTTGGAGGAGCTCTGCAGAATCTTGAACTGCAGTGA AAGTTCTTGGAGGAGCTCTGCATAATCTTGAACTGCAGTGA < 41bp 0.729853278888692 0.374544763641354 0.7801502 0.2799093 prediction 0.459706557777385 Functional Loss - KCNK18 ENSG00000186795 CDS Human protein_coding chr10:118957197 chr10:118957199 nonsynonymous SNV 0.378 0 23 hm5C_associated_SNPs_75098 0 0 0 0 1 KCNK18 chr10:118957222 5'GT 118957222 Upstream 24bp
chrX 49104943 49104943 1 + G A rs144632022 49104940 + 49104920 49104960 41 AGAAGCACCGGGTCCCACTCCTCGCTGAGTACCGCCACCTC AGAAGCACCGGGTCCCACTCCTCACTGAGTACCGCCACCTC < 41bp 0.7298500158573 0.481367252093819 0.5927183 0.06363624 prediction 0.459700031714599 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49104940 chrX:49104943 nonsynonymous SNV 0.804 1 24 hm5C_associated_SNPs_75100 1 0 0 0 2 CCDC22 chrX:49104868 3'AG 49104868 Downstream 76bp
chrX 49104943 49104943 1 + G A rs144632022 49104940 + 49104920 49104960 41 AGAAGCACCGGGTCCCACTCCTCGCTGAGTACCGCCACCTC AGAAGCACCGGGTCCCACTCCTCACTGAGTACCGCCACCTC < 41bp 0.7298500158573 0.481367252093819 0.5927183 0.06363624 prediction 0.459700031714599 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49104940 chrX:49104943 nonsynonymous SNV 0.804 1 24 hm5C_associated_SNPs_75100 1 0 0 0 2 CCDC22 chrX:49104984 5'GT 49104984 Upstream 42bp
chr10 135370263 135370263 1 - G A BRCA 135370265 - 135370245 135370285 41 ACAAGGACCTCTGGGACTTCCACGTGAGTCCCTCAAAGCCA ACAAGGACCTCTGGGACTTCCATGTGAGTCCCTCAAAGCCA < 41bp 0.808609867312763 0.578760740810109 0.30065715 0.31948936 prediction 0.459698253005309 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135370265 chr10:135370263 synonymous SNV . 0 23 hm5C_associated_SNPs_75102 0 0 0 0 2 SYCE1 chr10:135370263 5'GT 135370263 Upstream 1bp
chr10 135370263 135370263 1 - G A BRCA 135370265 - 135370245 135370285 41 ACAAGGACCTCTGGGACTTCCACGTGAGTCCCTCAAAGCCA ACAAGGACCTCTGGGACTTCCATGTGAGTCCCTCAAAGCCA < 41bp 0.808609867312763 0.578760740810109 0.30065715 0.31948936 prediction 0.459698253005309 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135370265 chr10:135370263 synonymous SNV . 0 23 hm5C_associated_SNPs_75102 0 0 0 0 2 SYCE1 chr10:135370326 3'AG 135370326 Downstream 64bp
chr15 81440239 81440239 1 + G C SKCM 81440238 + 81440218 81440258 41 TCAATCACTGTCACACAAATCGGGGACTGGCAGCCCACCGG TCAATCACTGTCACACAAATCCGGGACTGGCAGCCCACCGG < 41bp 0.876604904013347 0.64676071795431 0.9296972 0.85813177 prediction 0.459688372118075 Functional Loss - CFAP161 ENSG00000156206 CDS Human protein_coding chr15:81440238 chr15:81440239 nonsynonymous SNV 0.077 4 22 hm5C_associated_SNPs_75106 0 0 0 0 2 CFAP161 chr15:81440199 3'AG 81440199 Downstream 41bp
chr15 81440239 81440239 1 + G C SKCM 81440238 + 81440218 81440258 41 TCAATCACTGTCACACAAATCGGGGACTGGCAGCCCACCGG TCAATCACTGTCACACAAATCCGGGACTGGCAGCCCACCGG < 41bp 0.876604904013347 0.64676071795431 0.9296972 0.85813177 prediction 0.459688372118075 Functional Loss - CFAP161 ENSG00000156206 CDS Human protein_coding chr15:81440238 chr15:81440239 nonsynonymous SNV 0.077 4 22 hm5C_associated_SNPs_75106 0 0 0 0 2 CFAP161 chr15:81440272 5'GT 81440272 Upstream 34bp
chr7 154862828 154862828 1 - C T UCEC 154862831 - 154862811 154862851 41 GATGCCACCAGGTTGTGGGGCACGCGGTGGAAGGTGCGTAC GATGCCACCAGGTTGTGGGGCACACGGTGGAAGGTGCGTAC < 41bp 0.749936276633057 0.520092898549076 0.49627477 0.42649123 prediction 0.459686756167961 Functional Loss - HTR5A ENSG00000157219;ENSG00000220575 CDS Human other chr7:154862831 chr7:154862828 synonymous SNV . 0 24 hm5C_associated_SNPs_75108 0 0 0 0 1 HTR5A chr7:154862744 5'GT 154862744 Upstream 85bp
chr20 25255279 25255279 1 + C T GBM 25255277 + 25255257 25255297 41 CGGCAACCCCTGGGAGAAAGCGCGGCCTGAGTATATGCTTC CGGCAACCCCTGGGAGAAAGCGTGGCCTGAGTATATGCTTC < 41bp 0.816521364247256 0.586680815458819 0.87459373 0.7544205 prediction 0.459681097576873 Functional Loss - PYGB ENSG00000100994 CDS Human protein_coding chr20:25255277 chr20:25255279 nonsynonymous SNV 0.393 5 23 hm5C_associated_SNPs_75110 0 0 0 0 2 PYGB chr20:25255228 3'AG 25255228 Downstream 52bp
chr20 25255279 25255279 1 + C T GBM 25255277 + 25255257 25255297 41 CGGCAACCCCTGGGAGAAAGCGCGGCCTGAGTATATGCTTC CGGCAACCCCTGGGAGAAAGCGTGGCCTGAGTATATGCTTC < 41bp 0.816521364247256 0.586680815458819 0.87459373 0.7544205 prediction 0.459681097576873 Functional Loss - PYGB ENSG00000100994 CDS Human protein_coding chr20:25255277 chr20:25255279 nonsynonymous SNV 0.393 5 23 hm5C_associated_SNPs_75110 0 0 0 0 2 PYGB chr20:25255359 5'GT 25255359 Upstream 81bp
chr3 40464384 40464384 1 + G A UCEC 40464381 + 40464361 40464401 41 TCTCACCAATCCCTGTTACCCTCGGGATTATAGCATCAGCT TCTCACCAATCCCTGTTACCCTCAGGATTATAGCATCAGCT < 41bp 0.729839069644703 0.494328667497824 0.08454248 0.032224298 prediction 0.459678139289407 Functional Loss - ENTPD3 ENSG00000168032 CDS Human protein_coding chr3:40464381 chr3:40464384 nonsynonymous SNV 0.309 0 24 hm5C_associated_SNPs_75111 0 0 0 0 1 ENTPD3 chr3:40464341 3'AG 40464341 Downstream 44bp
chr4 25335045 25335045 1 + C T CESC 25335043 + 25335023 25335063 41 TGGTAGACTTACTTTCTGCCCTCGGATTCAGAAGAGTACTG TGGTAGACTTACTTTCTGCCCTTGGATTCAGAAGAGTACTG < 41bp 0.729838728100759 0.444603399281704 0.03952548 0.025520533 prediction 0.459677456201519 Functional Loss - ZCCHC4 ENSG00000168228 CDS Human protein_coding chr4:25335043 chr4:25335045 synonymous SNV . 0 23 hm5C_associated_SNPs_75112 0 0 1 1 1 ZCCHC4 chr4:25335080 5'GT 25335080 Upstream 36bp
chr4 25335046 25335046 1 + G A UCEC 25335043 + 25335023 25335063 41 TGGTAGACTTACTTTCTGCCCTCGGATTCAGAAGAGTACTG TGGTAGACTTACTTTCTGCCCTCAGATTCAGAAGAGTACTG < 41bp 0.729838728100759 0.494937140936082 0.03952548 0.021920472 prediction 0.459677456201519 Functional Loss - ZCCHC4 ENSG00000168228 CDS Human protein_coding chr4:25335043 chr4:25335046 nonsynonymous SNV 0.569 3 24 hm5C_associated_SNPs_75113 0 0 1 1 1 ZCCHC4 chr4:25335080 5'GT 25335080 Upstream 35bp
chr6 14131902 14131902 1 + C T rs77596175 14131900 + 14131880 14131920 41 CGAAACACTACCAGCTGCAACTCGGGGACATACAGGTGCAC CGAAACACTACCAGCTGCAACTTGGGGACATACAGGTGCAC < 41bp 0.830678205740505 0.600843117909345 0.589855 0.5326197 prediction 0.45967017566232 Functional Loss - CD83 ENSG00000112149 CDS Human protein_coding chr6:14131900 chr6:14131902 nonsynonymous SNV 0.024 1 23 hm5C_associated_SNPs_75115 0 0 0 0 1 CD83 chr6:14131979 5'GT 14131979 Upstream 78bp
chr8 43046706 43046706 1 + G T OV 43046703 + 43046683 43046723 41 CTGGAAGGCCTGTGGCTGGGCTTGACATTCCTCCTGCCAGT CTGGAAGGCCTGTGGCTGGGCTTTACATTCCTCCTGCCAGT < 41bp 0.72983065896526 0.325813119770119 0.2930957 0.3326881 prediction 0.45966131793052 Functional Loss - HGSNAT ENSG00000165102 CDS Human protein_coding chr8:43046703 chr8:43046706 nonsynonymous SNV 0.710 0 24 hm5C_associated_SNPs_75121 0 0 1 0 2 HGSNAT chr8:43046617 3'AG 43046617 Downstream 90bp
chr8 43046706 43046706 1 + G T OV 43046703 + 43046683 43046723 41 CTGGAAGGCCTGTGGCTGGGCTTGACATTCCTCCTGCCAGT CTGGAAGGCCTGTGGCTGGGCTTTACATTCCTCCTGCCAGT < 41bp 0.72983065896526 0.325813119770119 0.2930957 0.3326881 prediction 0.45966131793052 Functional Loss - HGSNAT ENSG00000165102 CDS Human protein_coding chr8:43046703 chr8:43046706 nonsynonymous SNV 0.710 0 24 hm5C_associated_SNPs_75121 0 0 1 0 2 HGSNAT chr8:43046738 5'GT 43046738 Upstream 33bp
chr18 21057044 21057044 1 + T C OV 21057043 + 21057023 21057063 41 GTATAACATGCTGTGGCATGCTGGAAAGGTGAGGAGCACAT GTATAACATGCTGTGGCATGCCGGAAAGGTGAGGAGCACAT < 41bp 0.776942907071372 0.547115764563692 0.11344895 0.13927591 prediction 0.45965428501536 Functional Loss - RIOK3 ENSG00000101782 CDS Human protein_coding chr18:21057043 chr18:21057044 synonymous SNV . 0 22 hm5C_associated_SNPs_75123 0 0 1 0 2 RIOK3 chr18:21056970 3'AG 21056970 Downstream 75bp
chr18 21057044 21057044 1 + T C OV 21057043 + 21057023 21057063 41 GTATAACATGCTGTGGCATGCTGGAAAGGTGAGGAGCACAT GTATAACATGCTGTGGCATGCCGGAAAGGTGAGGAGCACAT < 41bp 0.776942907071372 0.547115764563692 0.11344895 0.13927591 prediction 0.45965428501536 Functional Loss - RIOK3 ENSG00000101782 CDS Human protein_coding chr18:21057043 chr18:21057044 synonymous SNV . 0 22 hm5C_associated_SNPs_75123 0 0 1 0 2 RIOK3 chr18:21057050 5'GT 21057050 Upstream 7bp
chr12 107080807 107080807 1 + G A LUSC 107080804 + 107080784 107080824 41 CATATTCACCCCGGTCCAAACTCGGAACACTGCTGCCAGAA CATATTCACCCCGGTCCAAACTCAGAACACTGCTGCCAGAA < 41bp 0.750935446200652 0.521110441476259 0.20490366 0.055608183 prediction 0.459650009448786 Functional Loss - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107080804 chr12:107080807 nonsynonymous SNV 0.858 3 24 hm5C_associated_SNPs_75125 0 0 0 0 1 RFX4 chr12:107080875 5'GT 107080875 Upstream 69bp
chr3 157920882 157920882 1 + C T SKCM 157920880 + 157920860 157920900 41 GGTCCAGGTCAAGACCTCGTCTCCGTTCTCATAGTCGTAGC GGTCCAGGTCAAGACCTCGTCTTCGTTCTCATAGTCGTAGC < 41bp 0.729821031378943 0.448817802906539 0.22033417 0.09388429 prediction 0.459642062757886 Functional Loss - RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157920880 chr3:157920882 synonymous SNV . 0 23 hm5C_associated_SNPs_75127 0 0 1 0 1 RSRC1 chr3:157920861 3'AG 157920861 Downstream 22bp
chr16 24888677 24888677 1 + G A rs9932619 24888674 + 24888654 24888694 41 CTGGCCATCACTGCTGTATACACGGTTGCTGGTAAGACTGA CTGGCCATCACTGCTGTATACACAGTTGCTGGTAAGACTGA < 41bp 0.76345927237909 0.533639843880924 0.4489249 0.16594654 prediction 0.459638856996332 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24888674 chr16:24888677 synonymous SNV . 0 24 hm5C_associated_SNPs_75128 0 0 1 0 2 SLC5A11 chr16:24888579 3'AG 24888579 Downstream 99bp
chr16 24888677 24888677 1 + G A rs9932619 24888674 + 24888654 24888694 41 CTGGCCATCACTGCTGTATACACGGTTGCTGGTAAGACTGA CTGGCCATCACTGCTGTATACACAGTTGCTGGTAAGACTGA < 41bp 0.76345927237909 0.533639843880924 0.4489249 0.16594654 prediction 0.459638856996332 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24888674 chr16:24888677 synonymous SNV . 0 24 hm5C_associated_SNPs_75128 0 0 1 0 2 SLC5A11 chr16:24888684 5'GT 24888684 Upstream 8bp
chr11 13734568 13734568 1 + T C UCEC 13734567 + 13734547 13734587 41 GGCAGCACTAATCCTTTCCACTGGGGTGAAGTTGGTATGAT GGCAGCACTAATCCTTTCCACCGGGGTGAAGTTGGTATGAT < 41bp 0.749829078711605 0.520019190308873 0.2970266 0.44737703 prediction 0.459619776805464 Functional Loss - FAR1 ENSG00000197601 CDS Human protein_coding chr11:13734567 chr11:13734568 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_75134 0 0 1 0 2 FAR1 chr11:13734513 3'AG 13734513 Downstream 56bp
chr11 13734568 13734568 1 + T C UCEC 13734567 + 13734547 13734587 41 GGCAGCACTAATCCTTTCCACTGGGGTGAAGTTGGTATGAT GGCAGCACTAATCCTTTCCACCGGGGTGAAGTTGGTATGAT < 41bp 0.749829078711605 0.520019190308873 0.2970266 0.44737703 prediction 0.459619776805464 Functional Loss - FAR1 ENSG00000197601 CDS Human protein_coding chr11:13734567 chr11:13734568 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_75134 0 0 1 0 2 FAR1 chr11:13734580 5'GT 13734580 Upstream 13bp
chr6 53764595 53764595 1 + G A rs145944021 53764592 + 53764572 53764612 41 TGTTTAGATGTCTCTGAAAACAGGTTGGAAAGACTTCCTGA TGTTTAGATGTCTCTGAAAACAGATTGGAAAGACTTCCTGA < 41bp 0.733147405231832 0.503337984037808 0.4858679 0.36486262 prediction 0.459618842388049 Functional Loss - LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53764592 chr6:53764595 synonymous SNV . 0 24 hm5C_associated_SNPs_75135 0 0 1 0 2 LRRC1 chr6:53764545 3'AG 53764545 Downstream 51bp
chr6 53764595 53764595 1 + G A rs145944021 53764592 + 53764572 53764612 41 TGTTTAGATGTCTCTGAAAACAGGTTGGAAAGACTTCCTGA TGTTTAGATGTCTCTGAAAACAGATTGGAAAGACTTCCTGA < 41bp 0.733147405231832 0.503337984037808 0.4858679 0.36486262 prediction 0.459618842388049 Functional Loss - LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53764592 chr6:53764595 synonymous SNV . 0 24 hm5C_associated_SNPs_75135 0 0 1 0 2 LRRC1 chr6:53764689 5'GT 53764689 Upstream 95bp
chr5 180338372 180338372 1 + G A SKCM 180338369 + 180338349 180338389 41 AGTTCCTCTCATTTCCATCACGGGATATGTTGATAGAGACA AGTTCCTCTCATTTCCATCACGGAATATGTTGATAGAGACA < 41bp 0.786148028650011 0.556342625559463 0.8061239 0.2511036 prediction 0.459610806181097 Functional Loss - BTNL8 ENSG00000113303 CDS Human protein_coding chr5:180338369 chr5:180338372 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_75136 0 0 0 0 1 BTNL8 chr5:180338339 3'AG 180338339 Downstream 34bp
chr1 152759841 152759841 1 + C T LUAD 152759839 + 152759819 152759859 41 AGTGCACTCCCAAGTGCCCTCCCAAGTGTCCCACCCCCAAA AGTGCACTCCCAAGTGCCCTCCTAAGTGTCCCACCCCCAAA < 41bp 0.799419446386504 0.56961532190211 0.18251792 0.08202109 prediction 0.459608248968788 Functional Loss - LCE1E ENSG00000186226 CDS Human protein_coding chr1:152759839 chr1:152759841 synonymous SNV . 0 23 hm5C_associated_SNPs_75137 0 0 0 0 1 LCE1E chr1:152759754 3'AG 152759754 Downstream 88bp
chr2 216209508 216209508 1 + G A rs141872658 216209505 + 216209485 216209525 41 TTGTGTATGTGTTTCAGTTGCCAGAGTCTGCCCTCCGAGAC TTGTGTATGTGTTTCAGTTGCCAAAGTCTGCCCTCCGAGAC < 41bp 0.729799704777713 0.483321221874879 0.5369257 0.19059461 prediction 0.459599409555425 Functional Loss - ATIC ENSG00000138363 CDS Human protein_coding chr2:216209505 chr2:216209508 nonsynonymous SNV 0.392 1 24 hm5C_associated_SNPs_75139 1 0 1 0 2 ATIC chr2:216209502 3'AG 216209502 Downstream 7bp
chr2 216209508 216209508 1 + G A rs141872658 216209505 + 216209485 216209525 41 TTGTGTATGTGTTTCAGTTGCCAGAGTCTGCCCTCCGAGAC TTGTGTATGTGTTTCAGTTGCCAAAGTCTGCCCTCCGAGAC < 41bp 0.729799704777713 0.483321221874879 0.5369257 0.19059461 prediction 0.459599409555425 Functional Loss - ATIC ENSG00000138363 CDS Human protein_coding chr2:216209505 chr2:216209508 nonsynonymous SNV 0.392 1 24 hm5C_associated_SNPs_75139 1 0 1 0 2 ATIC chr2:216209594 5'GT 216209594 Upstream 87bp
chr1 201286773 201286773 1 + C T UCEC 201286771 + 201286751 201286791 41 AACCAGAACGTCCAGCAGGCCGCGGCAGGGGCCCTGCGCAA AACCAGAACGTCCAGCAGGCCGTGGCAGGGGCCCTGCGCAA < 41bp 0.821175840929928 0.591378038046426 0.8404468 0.7405624 prediction 0.459595605767005 Functional Loss - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201286771 chr1:201286773 nonsynonymous SNV 0.005 2 23 hm5C_associated_SNPs_75140 0 0 0 0 1 PKP1 chr1:201286700 3'AG 201286700 Downstream 74bp
chr10 13164482 13164482 1 + G A BLCA 13164479 + 13164459 13164499 41 AGAATGATGAAGAGAAAGGCCCGGAGACTGTGAGTCCTAAG AGAATGATGAAGAGAAAGGCCCGAAGACTGTGAGTCCTAAG < 41bp 0.749346154620084 0.519551768332359 0.24658129 0.102522105 prediction 0.45958877257545 Functional Loss - OPTN ENSG00000123240 CDS Human protein_coding chr10:13164479 chr10:13164482 nonsynonymous SNV 0.342 2 24 hm5C_associated_SNPs_75141 0 0 1 0 1 OPTN chr10:13164487 5'GT 13164487 Upstream 6bp
chr5 148989208 148989208 1 + G A LGG 148989205 + 148989185 148989225 41 TTGCTACTGGTGGACACGTACCGGAAGGAGCCGGAGCTGCA TTGCTACTGGTGGACACGTACCGAAAGGAGCCGGAGCTGCA < 41bp 0.729792906451567 0.48427039578246 0.4679101 0.27574432 prediction 0.459585812903135 Functional Loss - ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:148989205 chr5:148989208 synonymous SNV . 0 24 hm5C_associated_SNPs_75143 0 0 0 0 2 ARHGEF37 chr5:148989111 3'AG 148989111 Downstream 98bp
chr5 148989208 148989208 1 + G A LGG 148989205 + 148989185 148989225 41 TTGCTACTGGTGGACACGTACCGGAAGGAGCCGGAGCTGCA TTGCTACTGGTGGACACGTACCGAAAGGAGCCGGAGCTGCA < 41bp 0.729792906451567 0.48427039578246 0.4679101 0.27574432 prediction 0.459585812903135 Functional Loss - ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:148989205 chr5:148989208 synonymous SNV . 0 24 hm5C_associated_SNPs_75143 0 0 0 0 2 ARHGEF37 chr5:148989258 5'GT 148989258 Upstream 51bp
chr2 177054586 177054586 1 + A T COAD 177054582 + 177054562 177054602 41 AGCCCCTCCAGCGCGATCCGCACGAATTTCAGCACCAAGCA AGCCCCTCCAGCGCGATCCGCACGTATTTCAGCACCAAGCA < 41bp 0.886528701493794 0.656736043965622 0.09755334 0.067546785 prediction 0.459585315056344 Functional Loss - HOXD1 ENSG00000128645 CDS Human protein_coding chr2:177054582 chr2:177054586 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_75144 0 0 1 1 1 HOXD1 chr2:177054536 3'AG 177054536 Downstream 51bp
chr19 54966659 54966659 1 + C T COAD 54966657 + 54966637 54966677 41 TCGGAGGAGGACAAGGACCGCACGGAAAAGCTGCTCAAGGA TCGGAGGAGGACAAGGACCGCATGGAAAAGCTGCTCAAGGA < 41bp 0.729792349703805 0.471906183979243 0.72951543 0.61558163 prediction 0.45958469940761 Functional Loss - LENG8 ENSG00000167615 CDS Human protein_coding chr19:54966657 chr19:54966659 nonsynonymous SNV 0.987 4 23 hm5C_associated_SNPs_75145 0 0 1 0 1 LENG8 chr19:54966746 5'GT 54966746 Upstream 88bp
chr10 12131232 12131232 1 + G A LUAD 12131229 + 12131209 12131249 41 TCCAGACAACTCAGCCCAGCCGGGGGACAGGGTCATTTGCT TCCAGACAACTCAGCCCAGCCGGAGGACAGGGTCATTTGCT < 41bp 0.77539713827687 0.5456089559454 0.92178893 0.8667034 prediction 0.45957636466294 Functional Loss - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12131229 chr10:12131232 nonsynonymous SNV 0.902 5 24 hm5C_associated_SNPs_75149 0 0 1 0 1 DHTKD1 chr10:12131254 5'GT 12131254 Upstream 23bp
chr12 56733288 56733288 1 + G T UCEC 56733285 + 56733265 56733305 41 GTGGAGATGGCTGTGACCCCCAAGGACTCAGGGACAACAGT GTGGAGATGGCTGTGACCCCCAATGACTCAGGGACAACAGT < 41bp 0.729785243689225 0.32528128552715 0.2755419 0.008899897 prediction 0.459570487378451 Functional Loss - IL23A ENSG00000110944 CDS Human protein_coding chr12:56733285 chr12:56733288 stopgain 1.000 1 24 hm5C_associated_SNPs_75150 0 0 1 0 2 IL23A chr12:56733210 3'AG 56733210 Downstream 79bp
chr12 56733288 56733288 1 + G T UCEC 56733285 + 56733265 56733305 41 GTGGAGATGGCTGTGACCCCCAAGGACTCAGGGACAACAGT GTGGAGATGGCTGTGACCCCCAATGACTCAGGGACAACAGT < 41bp 0.729785243689225 0.32528128552715 0.2755419 0.008899897 prediction 0.459570487378451 Functional Loss - IL23A ENSG00000110944 CDS Human protein_coding chr12:56733285 chr12:56733288 stopgain 1.000 1 24 hm5C_associated_SNPs_75150 0 0 1 0 2 IL23A chr12:56733308 5'GT 56733308 Upstream 21bp
chr1 210522329 210522329 1 + C T STAD 210522327 + 210522307 210522347 41 GTGCCAAGGAGCCATGCTGCCCCGATGGGAACTGGCACTTT GTGCCAAGGAGCCATGCTGCCCTGATGGGAACTGGCACTTT < 41bp 0.72978499105614 0.45754706896098 0.32205155 0.35833877 prediction 0.459569982112281 Functional Loss - HHAT ENSG00000054392 CDS Human protein_coding chr1:210522327 chr1:210522329 stopgain 0.612 0 23 hm5C_associated_SNPs_75151 0 0 0 0 2 HHAT chr1:210522277 3'AG 210522277 Downstream 53bp
chr1 210522329 210522329 1 + C T STAD 210522327 + 210522307 210522347 41 GTGCCAAGGAGCCATGCTGCCCCGATGGGAACTGGCACTTT GTGCCAAGGAGCCATGCTGCCCTGATGGGAACTGGCACTTT < 41bp 0.72978499105614 0.45754706896098 0.32205155 0.35833877 prediction 0.459569982112281 Functional Loss - HHAT ENSG00000054392 CDS Human protein_coding chr1:210522327 chr1:210522329 stopgain 0.612 0 23 hm5C_associated_SNPs_75151 0 0 0 0 2 HHAT chr1:210522410 5'GT 210522410 Upstream 82bp
chr9 101822204 101822204 1 + G A STAD 101822201 + 101822181 101822221 41 TCCAGGTCCCCCTGGCCCTCCAGGACAGCCAGGGCTTCCCG TCCAGGTCCCCCTGGCCCTCCAGAACAGCCAGGGCTTCCCG < 41bp 0.729781872061936 0.490540179411735 0.2940316 0.3317624 prediction 0.459563744123872 Functional Loss - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101822201 chr9:101822204 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_75152 0 0 0 0 2 COL15A1 chr9:101822171 3'AG 101822171 Downstream 34bp
chr9 101822204 101822204 1 + G A STAD 101822201 + 101822181 101822221 41 TCCAGGTCCCCCTGGCCCTCCAGGACAGCCAGGGCTTCCCG TCCAGGTCCCCCTGGCCCTCCAGAACAGCCAGGGCTTCCCG < 41bp 0.729781872061936 0.490540179411735 0.2940316 0.3317624 prediction 0.459563744123872 Functional Loss - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101822201 chr9:101822204 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_75152 0 0 0 0 2 COL15A1 chr9:101822235 5'GT 101822235 Upstream 32bp
chr20 30102531 30102531 1 + C T rs116584522 30102529 + 30102509 30102549 41 TGCGCTCCGTACGCTGCGCCCGCGGCAAGGTAGGGTCAGCG TGCGCTCCGTACGCTGCGCCCGTGGCAAGGTAGGGTCAGCG < 41bp 0.790678221697548 0.560901002349856 0.593476 0.4847014 prediction 0.459554438695384 Functional Loss - HM13 ENSG00000101294 CDS Human protein_coding chr20:30102529 chr20:30102531 synonymous SNV . 0 23 hm5C_associated_SNPs_75154 0 0 1 0 1 HM13 chr20:30102537 5'GT 30102537 Upstream 7bp
chr18 28986080 28986080 1 + A C UCEC 28986076 + 28986056 28986096 41 TACGGCTAAGCAGGTTTTATCTCCAGGATTTTATGAAATCC TACGGCTAAGCAGGTTTTATCTCCCGGATTTTATGAAATCC < 41bp 0.729776173367779 0.299759546007688 0.9334882 0.18296814 prediction 0.459552346735558 Functional Loss - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28986076 chr18:28986080 synonymous SNV . 0 25 hm5C_associated_SNPs_75155 0 0 0 0 1 DSG4 chr18:28986040 3'AG 28986040 Downstream 41bp
chr1 16096962 16096962 1 + G T UCEC 16096959 + 16096939 16096979 41 CGAGAGCTGGCTGTGGAGGCCATGAAGAGGCAGTACCATGC CGAGAGCTGGCTGTGGAGGCCATTAAGAGGCAGTACCATGC < 41bp 0.729774658798251 0.329895311715455 0.28768727 0.40455452 prediction 0.459549317596502 Functional Loss - FBLIM1 ENSG00000162458 CDS Human protein_coding chr1:16096959 chr1:16096962 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_75157 0 0 0 0 1 FBLIM1 chr1:16096904 3'AG 16096904 Downstream 59bp
chr1 67205210 67205210 1 + C T UCEC 67205208 + 67205188 67205228 41 CAAGCTCCAGGCAGTGCTCCCACCAGCAGTCTGGTATGAAG CAAGCTCCAGGCAGTGCTCCCATCAGCAGTCTGGTATGAAG < 41bp 0.72977227226992 0.448791308765671 0.08190289 0.08918291 prediction 0.459544544539839 Functional Loss - SGIP1 ENSG00000118473 CDS Human protein_coding chr1:67205208 chr1:67205210 nonsynonymous SNV 0.948 3 23 hm5C_associated_SNPs_75160 0 0 0 0 1 SGIP1 chr1:67205220 5'GT 67205220 Upstream 11bp
chr19 38817250 38817250 1 + C T UCEC 38817248 + 38817228 38817268 41 CCTAGGCTATGGGTACACAACGCCACTGACTGATGCGGGCA CCTAGGCTATGGGTACACAACGTCACTGACTGATGCGGGCA < 41bp 0.850662175715541 0.620890284503643 0.087439924 0.07259488 prediction 0.459543782423796 Functional Loss - KCNK6 ENSG00000099337 CDS Human protein_coding chr19:38817248 chr19:38817250 nonsynonymous SNV 0.901 4 23 hm5C_associated_SNPs_75161 0 0 0 0 1 KCNK6 chr19:38817233 3'AG 38817233 Downstream 18bp
chr16 3712006 3712006 1 - G A rs538573375 3712008 - 3711988 3712028 41 CGCGCACAGCTCCTGCAGCCCACGCTGGAGATCAACCCCAG CGCGCACAGCTCCTGCAGCCCATGCTGGAGATCAACCCCAG < 41bp 0.729770764555875 0.464549840828186 0.10259211 0.21622372 prediction 0.459541529111751 Functional Loss - TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712008 chr16:3712006 nonsynonymous SNV 0.937 2 23 hm5C_associated_SNPs_75162 0 0 0 0 1 TRAP1 chr16:3711988 5'GT 3711988 Upstream 19bp
chr19 56465939 56465939 1 + G A SKCM 56465936 + 56465916 56465956 41 ATGGGACATTACGACTTGGCCTGGAAACCAGAGGGACTTCT ATGGGACATTACGACTTGGCCTGAAAACCAGAGGGACTTCT < 41bp 0.748201510078255 0.518435361511849 0.017573416 0.007557243 prediction 0.459532297132812 Functional Loss - NLRP8 ENSG00000179709 CDS Human protein_coding chr19:56465936 chr19:56465939 nonsynonymous SNV 0.030 1 24 hm5C_associated_SNPs_75165 0 0 0 0 1 NLRP8 chr19:56465867 3'AG 56465867 Downstream 73bp
chr2 234247373 234247373 1 + G A SKCM 234247370 + 234247350 234247390 41 CTGGGAATCCTGGTGTCTTACCAGATCAAGGTGAAGCTCAC CTGGGAATCCTGGTGTCTTACCAAATCAAGGTGAAGCTCAC < 41bp 0.757406184800973 0.527642675593082 0.427709 0.2060493 prediction 0.459527018415782 Functional Loss - SAG ENSG00000130561 CDS Human protein_coding chr2:234247370 chr2:234247373 synonymous SNV . 0 24 hm5C_associated_SNPs_75169 0 0 0 0 1 SAG chr2:234247322 3'AG 234247322 Downstream 52bp
chr15 91832773 91832773 1 + A C ESCA 91832769 + 91832749 91832789 41 AGGTGGCTCCATGCTAATCTCTGCAGTCTGCTGCTTCTTCC AGGTGGCTCCATGCTAATCTCTGCCGTCTGCTGCTTCTTCC < 41bp 0.729759915885284 0.306969172410291 0.5674782 0.368135 prediction 0.459519831770568 Functional Loss - SV2B ENSG00000185518 CDS Human protein_coding chr15:91832769 chr15:91832773 synonymous SNV . 0 25 hm5C_associated_SNPs_75173 0 0 0 6 1 SV2B chr15:91832751 3'AG 91832751 Downstream 23bp
chr15 45407980 45407980 1 + G A rs79659591 45407977 + 45407957 45407997 41 TGGCAGGGCTCAGGCCTGACCCGGGTGCCTATTCCTGCAGC TGGCAGGGCTCAGGCCTGACCCGAGTGCCTATTCCTGCAGC < 41bp 0.779591697003256 0.549833466965778 0.9384885 0.9154407 prediction 0.459516460074957 Functional Loss - DUOXA2 ENSG00000140274 UTR3 Human protein_coding chr15:45407977 chr15:45407980 . . 0 24 hm5C_associated_SNPs_75176 0 0 0 0 1 DUOXA2 chr15:45408054 5'GT 45408054 Upstream 75bp
chr9 117379536 117379536 1 + G T TGCT 117379534 + 117379514 117379554 41 CCCATTGCCCCCCTCCTCCCCTGGCTGGAGTGCCCTGCCTG CCCATTGCCCCCCTCCTCCCCTTGCTGGAGTGCCCTGCCTG < 41bp 0.729753549653136 0.404289576776462 0.34676012 0.1419949 prediction 0.459507099306272 Functional Loss - TMEM268 ENSG00000157693 CDS Human protein_coding chr9:117379534 chr9:117379536 nonsynonymous SNV 0.078 2 23 hm5C_associated_SNPs_75179 0 0 1 0 1 TMEM268 chr9:117379581 5'GT 117379581 Upstream 46bp
chr16 3189017 3189017 1 + G T UCEC 3189015 + 3188995 3189035 41 ACATCCCATTCTATTTCTCCCGGGAAGAATGGGGCACCCTG ACATCCCATTCTATTTCTCCCGTGAAGAATGGGGCACCCTG < 41bp 0.890203223174109 0.660450336209102 0.89111406 0.053661764 prediction 0.459505773930013 Functional Loss - ZNF213 ENSG00000085644 CDS Human protein_coding chr16:3189015 chr16:3189017 stopgain 0.993 0 23 hm5C_associated_SNPs_75180 0 0 0 0 2 ZNF213 chr16:3188976 3'AG 3188976 Downstream 42bp
chr16 3189017 3189017 1 + G T UCEC 3189015 + 3188995 3189035 41 ACATCCCATTCTATTTCTCCCGGGAAGAATGGGGCACCCTG ACATCCCATTCTATTTCTCCCGTGAAGAATGGGGCACCCTG < 41bp 0.890203223174109 0.660450336209102 0.89111406 0.053661764 prediction 0.459505773930013 Functional Loss - ZNF213 ENSG00000085644 CDS Human protein_coding chr16:3189015 chr16:3189017 stopgain 0.993 0 23 hm5C_associated_SNPs_75180 0 0 0 0 2 ZNF213 chr16:3189099 5'GT 3189099 Upstream 83bp
chr3 190126224 190126224 1 + C T COAD 190126222 + 190126202 190126242 41 AATTTGGTTGGTCCTGTTGGCTCGGAATGGCTGGGTCTCTG AATTTGGTTGGTCCTGTTGGCTTGGAATGGCTGGGTCTCTG < 41bp 0.825170668896129 0.595418903785183 0.3449257 0.294486 prediction 0.459503530221892 Functional Loss - CLDN16 ENSG00000113946 CDS Human protein_coding chr3:190126222 chr3:190126224 synonymous SNV . 0 23 hm5C_associated_SNPs_75181 0 0 0 0 1 CLDN16 chr3:190126294 5'GT 190126294 Upstream 71bp
chr9 132630354 132630354 1 + C T COAD 132630352 + 132630332 132630372 41 CTCAAGGAGCCGGTGGTGGCCACGGTGGCGCTGACGGAGGC CTCAAGGAGCCGGTGGTGGCCATGGTGGCGCTGACGGAGGC < 41bp 0.817991370117261 0.588245888096857 0.8126607 0.8656386 prediction 0.459490964040808 Functional Loss - USP20 ENSG00000136878 CDS Human protein_coding chr9:132630352 chr9:132630354 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_75184 0 0 1 0 1 USP20 chr9:132630284 3'AG 132630284 Downstream 71bp
chr7 55229292 55229292 1 + G A GBM 55229289 + 55229269 55229309 41 TGCCGGAATGTCAGCCGAGGCAGGGAATGCGTGGACAAGTG TGCCGGAATGTCAGCCGAGGCAGAGAATGCGTGGACAAGTG < 41bp 0.748733114179733 0.518990153127498 0.8407512 0.49761984 prediction 0.45948592210447 Functional Loss - EGFR ENSG00000146648 CDS Human protein_coding chr7:55229289 chr7:55229292 synonymous SNV . 0 24 hm5C_associated_SNPs_75185 0 0 0 0 1 EGFR chr7:55229324 5'GT 55229324 Upstream 33bp
chr1 119929401 119929401 1 + G A SKCM 119929398 + 119929378 119929418 41 TAGCTGTGAAGCACAATGTCCAGGGTATCATTGTTTCCAAC TAGCTGTGAAGCACAATGTCCAGAGTATCATTGTTTCCAAC < 41bp 0.729741983428462 0.491478527611722 0.82214165 0.26936564 prediction 0.459483966856923 Functional Loss - HAO2 ENSG00000116882 CDS Human protein_coding chr1:119929398 chr1:119929401 nonsynonymous SNV 0.893 4 24 hm5C_associated_SNPs_75187 0 0 0 0 1 HAO2 chr1:119929454 5'GT 119929454 Upstream 54bp
chr20 31763316 31763316 1 + G A LUSC 31763313 + 31763293 31763333 41 CACACCAGCCTGTTGCCGTCCTGGGAGAATGCGCCAGTGAC CACACCAGCCTGTTGCCGTCCTGAGAGAATGCGCCAGTGAC < 41bp 0.75451580567193 0.524778546379989 0.2697841 0.1923008 prediction 0.45947451858388 Functional Loss - BPIFA2 ENSG00000131050 CDS Human protein_coding chr20:31763313 chr20:31763316 nonsynonymous SNV 0.237 1 24 hm5C_associated_SNPs_75188 0 0 0 0 1 BPIFA2 chr20:31763365 5'GT 31763365 Upstream 50bp
chr10 26939554 26939554 1 + G A rs11819540 26939551 + 26939531 26939571 41 CAGATTCTGTCAGTGCTGTTCTCGAAGAGGCCCAGGCACAT CAGATTCTGTCAGTGCTGTTCTCAAAGAGGCCCAGGCACAT < 41bp 0.734434034726231 0.50471608760483 0.6913793 0.32164788 prediction 0.459435894242803 Functional Loss - FAM238B ENSG00000231976 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:26939551 chr10:26939554 . . 0 24 hm5C_associated_SNPs_75197 0 0 0 0 1 FAM238B chr10:26939483 3'AG 26939483 Downstream 72bp
chr17 73221238 73221238 1 + G A UCEC 73221235 + 73221215 73221255 41 GCAGGGCCGGCTGGATGAGGCCCGACAGATGCTCTCCAAGG GCAGGGCCGGCTGGATGAGGCCCAACAGATGCTCTCCAAGG < 41bp 0.777671573279361 0.547954778586754 0.16516188 0.094730884 prediction 0.459433589385214 Functional Loss - NUP85 ENSG00000125450 CDS Human protein_coding chr17:73221235 chr17:73221238 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_75198 0 0 1 0 1 NUP85 chr17:73221198 3'AG 73221198 Downstream 41bp
chr17 44950100 44950100 1 + A T LUAD 44950096 + 44950076 44950116 41 TTTCAGTTCCGGCATGAGCGCTGGAACTGTAGCCTGGAGGG TTTCAGTTCCGGCATGAGCGCTGGTACTGTAGCCTGGAGGG < 41bp 0.888683002892706 0.658972139646558 0.30215138 0.26420113 prediction 0.459421726492296 Functional Loss - WNT9B ENSG00000158955 CDS Human protein_coding chr17:44950096 chr17:44950100 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_75203 0 0 0 0 1 WNT9B chr17:44950139 5'GT 44950139 Upstream 40bp
chr6 44275060 44275060 1 + G A COAD 44275057 + 44275037 44275077 41 GTGCGGATGTGGTCAGCCACCACGCGGTACGCTGTGTCTGT GTGCGGATGTGGTCAGCCACCACACGGTACGCTGTGTCTGT < 41bp 0.729710817975525 0.482173372257991 0.1287184 0.025568634 prediction 0.459421635951049 Functional Loss - AARS2 ENSG00000124608 CDS Human other chr6:44275057 chr6:44275060 synonymous SNV . 0 24 hm5C_associated_SNPs_75204 1 0 0 0 1 AARS2 chr6:44274971 3'AG 44274971 Downstream 90bp
chr17 27068463 27068463 1 + C T STAD 27068461 + 27068441 27068481 41 GTACTCTTGGGGCAAAGGGGCGCGAGGTCGATTGGGAAGGA GTACTCTTGGGGCAAAGGGGCGTGAGGTCGATTGGGAAGGA < 41bp 0.841414098833588 0.61170411934057 0.5117609 0.54551214 prediction 0.459419958986036 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27068461 chr17:27068463 stopgain 0.998 1 23 hm5C_associated_SNPs_75205 0 0 1 0 1 NEK8 chr17:27068431 3'AG 27068431 Downstream 33bp
chr10 11894094 11894094 1 + G A UCEC 11894091 + 11894071 11894111 41 GTGGAGATGCCTGTAACCCACCGGAAATCAGACGCATCTGA GTGGAGATGCCTGTAACCCACCGAAAATCAGACGCATCTGA < 41bp 0.774104112125536 0.544397015499707 0.20890087 0.20627916 prediction 0.459414193251659 Functional Loss - PROSER2 ENSG00000148426 CDS Human antisense chr10:11894091 chr10:11894094 synonymous SNV . 0 24 hm5C_associated_SNPs_75206 0 0 1 0 1 PROSER2-AS1 chr10:11893996 3'AG 11893996 Downstream 99bp
chr11 59828645 59828645 1 + C T CESC 59828643 + 59828623 59828663 41 AAACAACCCCAATGGCCTCCCACGAAGTTGATAATGCAGAG AAACAACCCCAATGGCCTCCCATGAAGTTGATAATGCAGAG < 41bp 0.808879539417215 0.57917406217675 0.15799636 0.21397245 prediction 0.459410954480931 Functional Loss - MS4A3 ENSG00000149516 CDS Human protein_coding chr11:59828643 chr11:59828645 synonymous SNV . 0 23 hm5C_associated_SNPs_75209 0 0 1 0 1 MS4A3 chr11:59828619 3'AG 59828619 Downstream 27bp
chr15 45965895 45965895 1 + G A rs143048388 45965892 + 45965872 45965912 41 AGAAGACATGGAAAGCTCTGCAGGACTTCAAAGAGGGCAAT AGAAGACATGGAAAGCTCTGCAGAACTTCAAAGAGGGCAAT < 41bp 0.753498173708034 0.523797857530526 0.1798918 0.08096832 prediction 0.459400632355015 Functional Loss - SQOR ENSG00000137767;ENSG00000260170 CDS Human other chr15:45965892 chr15:45965895 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_75210 0 0 0 0 1 SQOR chr15:45965805 3'AG 45965805 Downstream 91bp
chr3 169644954 169644954 1 + C T SKCM 169644952 + 169644932 169644972 41 TGGGGTTTGCCCTCCAGTTCCTCGACCATCTCTGCCAGGTG TGGGGTTTGCCCTCCAGTTCCTTGACCATCTCTGCCAGGTG < 41bp 0.83105346162734 0.601355171389591 0.29961497 0.06622544 prediction 0.459396580475498 Functional Loss - SAMD7 ENSG00000187033 CDS Human protein_coding chr3:169644952 chr3:169644954 stopgain 0.000 0 23 hm5C_associated_SNPs_75212 0 0 0 0 1 SAMD7 chr3:169644969 5'GT 169644969 Upstream 16bp
chr22 31529916 31529916 1 + G A rs202014053 31529913 + 31529893 31529933 41 CCCCAGATCTCGCTGCCTTCCTCGGAGTTGGCCAGCAGCAG CCCCAGATCTCGCTGCCTTCCTCAGAGTTGGCCAGCAGCAG < 41bp 0.729695705506511 0.492437072877428 0.030857354 0.025815994 prediction 0.459391411013022 Functional Loss - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31529913 chr22:31529916 synonymous SNV . 0 24 hm5C_associated_SNPs_75215 0 0 0 0 1 INPP5J chr22:31529899 3'AG 31529899 Downstream 18bp
chr5 2752818 2752818 1 + G C BLCA 2752817 + 2752797 2752837 41 CTGAAGCCTCCCAGTCACGTCGAGAACGGGCAGGAGCTCAG CTGAAGCCTCCCAGTCACGTCCAGAACGGGCAGGAGCTCAG < 41bp 0.861865420881374 0.632172524364102 0.45121452 0.4387952 prediction 0.459385793034543 Functional Loss - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2752817 chr5:2752818 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_75216 0 0 0 0 3 C5orf38 chr5:2752736 3'AG 2752736 Downstream 83bp
chr5 2752818 2752818 1 + G C BLCA 2752817 + 2752797 2752837 41 CTGAAGCCTCCCAGTCACGTCGAGAACGGGCAGGAGCTCAG CTGAAGCCTCCCAGTCACGTCCAGAACGGGCAGGAGCTCAG < 41bp 0.861865420881374 0.632172524364102 0.45121452 0.4387952 prediction 0.459385793034543 Functional Loss - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2752817 chr5:2752818 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_75216 0 0 0 0 3 C5orf38 chr5:2752794 3'AG 2752794 Downstream 25bp
chr5 2752818 2752818 1 + G C BLCA 2752817 + 2752797 2752837 41 CTGAAGCCTCCCAGTCACGTCGAGAACGGGCAGGAGCTCAG CTGAAGCCTCCCAGTCACGTCCAGAACGGGCAGGAGCTCAG < 41bp 0.861865420881374 0.632172524364102 0.45121452 0.4387952 prediction 0.459385793034543 Functional Loss - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2752817 chr5:2752818 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_75216 0 0 0 0 3 C5orf38 chr5:2752868 5'GT 2752868 Upstream 51bp
chr5 176867757 176867757 1 + G A PAAD 176867754 + 176867734 176867774 41 ATTGAACAGTTCTCTACGGTCAAGGGCGTGGAGCTGGAGCC ATTGAACAGTTCTCTACGGTCAAAGGCGTGGAGCTGGAGCC < 41bp 0.769868486150017 0.540177886804751 0.83191156 0.5051626 prediction 0.459381198690533 Functional Loss - GRK6 ENSG00000198055 CDS Human protein_coding chr5:176867754 chr5:176867757 synonymous SNV . 0 24 hm5C_associated_SNPs_75218 0 0 1 0 2 GRK6 chr5:176867701 3'AG 176867701 Downstream 57bp
chr5 176867757 176867757 1 + G A PAAD 176867754 + 176867734 176867774 41 ATTGAACAGTTCTCTACGGTCAAGGGCGTGGAGCTGGAGCC ATTGAACAGTTCTCTACGGTCAAAGGCGTGGAGCTGGAGCC < 41bp 0.769868486150017 0.540177886804751 0.83191156 0.5051626 prediction 0.459381198690533 Functional Loss - GRK6 ENSG00000198055 CDS Human protein_coding chr5:176867754 chr5:176867757 synonymous SNV . 0 24 hm5C_associated_SNPs_75218 0 0 1 0 2 GRK6 chr5:176867838 5'GT 176867838 Upstream 82bp
chr20 20150064 20150064 1 + G A BRCA 20150061 + 20150041 20150081 41 TCCCTTTCAACACCTGCACCCTCGAGCAGGACCTCTACGTC TCCCTTTCAACACCTGCACCCTCAAGCAGGACCTCTACGTC < 41bp 0.757006695110938 0.527319449395203 0.02378583 0.01042971 prediction 0.45937449143147 Functional Loss - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20150061 chr20:20150064 nonsynonymous SNV 0.235 0 24 hm5C_associated_SNPs_75222 0 0 0 0 3 CFAP61 chr20:20149965 3'AG 20149965 Downstream 100bp
chr20 20150064 20150064 1 + G A BRCA 20150061 + 20150041 20150081 41 TCCCTTTCAACACCTGCACCCTCGAGCAGGACCTCTACGTC TCCCTTTCAACACCTGCACCCTCAAGCAGGACCTCTACGTC < 41bp 0.757006695110938 0.527319449395203 0.02378583 0.01042971 prediction 0.45937449143147 Functional Loss - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20150061 chr20:20150064 nonsynonymous SNV 0.235 0 24 hm5C_associated_SNPs_75222 0 0 0 0 3 CFAP61 chr20:20150025 3'AG 20150025 Downstream 40bp
chr20 20150064 20150064 1 + G A BRCA 20150061 + 20150041 20150081 41 TCCCTTTCAACACCTGCACCCTCGAGCAGGACCTCTACGTC TCCCTTTCAACACCTGCACCCTCAAGCAGGACCTCTACGTC < 41bp 0.757006695110938 0.527319449395203 0.02378583 0.01042971 prediction 0.45937449143147 Functional Loss - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20150061 chr20:20150064 nonsynonymous SNV 0.235 0 24 hm5C_associated_SNPs_75222 0 0 0 0 3 CFAP61 chr20:20150104 5'GT 20150104 Upstream 41bp
chr8 35616958 35616958 1 + T C LUAD 35616957 + 35616937 35616977 41 CTTGATATTCCCCCATTCCTCTGGAGAATTAAACCATTCAC CTTGATATTCCCCCATTCCTCCGGAGAATTAAACCATTCAC < 41bp 0.769365212329686 0.539678731574416 0.14857367 0.52587426 prediction 0.45937296151054 Functional Loss - UNC5D ENSG00000156687 CDS Human protein_coding chr8:35616957 chr8:35616958 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_75223 0 0 0 0 1 UNC5D chr8:35616987 5'GT 35616987 Upstream 30bp
chr17 78081661 78081661 1 + A T rs1800303 78081657 + 78081637 78081677 41 GGCGCTGGAGGACGGCGGGTCGGCACACGGGGTGTTCCTGC GGCGCTGGAGGACGGCGGGTCGGCTCACGGGGTGTTCCTGC < 41bp 0.88691260632695 0.657226932372312 0.9228476 0.5830205 prediction 0.459371347909277 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78081657 chr17:78081661 synonymous SNV . 0 25 hm5C_associated_SNPs_75224 2 0 0 0 2 GAA chr17:78081599 3'AG 78081599 Downstream 63bp
chr17 78081661 78081661 1 + A T rs1800303 78081657 + 78081637 78081677 41 GGCGCTGGAGGACGGCGGGTCGGCACACGGGGTGTTCCTGC GGCGCTGGAGGACGGCGGGTCGGCTCACGGGGTGTTCCTGC < 41bp 0.88691260632695 0.657226932372312 0.9228476 0.5830205 prediction 0.459371347909277 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78081657 chr17:78081661 synonymous SNV . 0 25 hm5C_associated_SNPs_75224 2 0 0 0 2 GAA chr17:78081695 5'GT 78081695 Upstream 35bp
chr6 7861759 7861759 1 + G A SKCM 7861756 + 7861736 7861776 41 GGCTGGCTGGAATTTGACATCACGGCCACTAGCAATCTGTG GGCTGGCTGGAATTTGACATCACAGCCACTAGCAATCTGTG < 41bp 0.748018911439917 0.518333336555636 0.33905804 0.23459327 prediction 0.459371149768562 Functional Loss - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7861756 chr6:7861759 synonymous SNV . 0 24 hm5C_associated_SNPs_75225 0 0 0 0 2 BMP6 chr6:7861684 3'AG 7861684 Downstream 76bp
chr6 7861759 7861759 1 + G A SKCM 7861756 + 7861736 7861776 41 GGCTGGCTGGAATTTGACATCACGGCCACTAGCAATCTGTG GGCTGGCTGGAATTTGACATCACAGCCACTAGCAATCTGTG < 41bp 0.748018911439917 0.518333336555636 0.33905804 0.23459327 prediction 0.459371149768562 Functional Loss - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7861756 chr6:7861759 synonymous SNV . 0 24 hm5C_associated_SNPs_75225 0 0 0 0 2 BMP6 chr6:7861832 5'GT 7861832 Upstream 74bp
chr11 124955341 124955341 1 + G A rs183531018 124955338 + 124955318 124955358 41 GCCAAAGCCCTGTCCACGGTCACGGCCATCATTGACGGCAC GCCAAAGCCCTGTCCACGGTCACAGCCATCATTGACGGCAC < 41bp 0.785835359741794 0.55615036850029 0.7197678 0.41967434 prediction 0.459369982483008 Functional Loss - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124955338 chr11:124955341 synonymous SNV . 0 24 hm5C_associated_SNPs_75226 0 0 0 0 2 SLC37A2 chr11:124955291 3'AG 124955291 Downstream 51bp
chr11 124955341 124955341 1 + G A rs183531018 124955338 + 124955318 124955358 41 GCCAAAGCCCTGTCCACGGTCACGGCCATCATTGACGGCAC GCCAAAGCCCTGTCCACGGTCACAGCCATCATTGACGGCAC < 41bp 0.785835359741794 0.55615036850029 0.7197678 0.41967434 prediction 0.459369982483008 Functional Loss - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124955338 chr11:124955341 synonymous SNV . 0 24 hm5C_associated_SNPs_75226 0 0 0 0 2 SLC37A2 chr11:124955369 5'GT 124955369 Upstream 29bp
chr17 27381604 27381604 1 + T C UCEC 27381603 + 27381583 27381623 41 TTACTGGCGAGAGATGGTTCCTGGGAGCTATGGTGTGTCCC TTACTGGCGAGAGATGGTTCCCGGGAGCTATGGTGTGTCCC < 41bp 0.763910324092728 0.534225416395444 0.4785475 0.9046222 prediction 0.459369815394568 Functional Loss - PIPOX ENSG00000179761 CDS Human protein_coding chr17:27381603 chr17:27381604 synonymous SNV . 0 22 hm5C_associated_SNPs_75227 0 0 0 0 1 PIPOX chr17:27381563 3'AG 27381563 Downstream 42bp
chrX 50654065 50654065 1 + G A HNSC 50654062 + 50654042 50654082 41 AACCGCACCATTGGGGCCACCATGGTGAGGCTGGTGAAGCC AACCGCACCATTGGGGCCACCATAGTGAGGCTGGTGAAGCC < 41bp 0.729680362576555 0.487378690370424 0.43697813 0.4963967 prediction 0.459360725153109 Functional Loss - BMP15 ENSG00000130385 CDS Human protein_coding chrX:50654062 chrX:50654065 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_75229 0 0 0 0 1 BMP15 chrX:50654111 5'GT 50654111 Upstream 47bp
chr19 50185273 50185273 1 + G A GBM 50185270 + 50185250 50185290 41 GCTGGACGTCGGCTCGGGCACCGGCATCCTCTGCATGTTTG GCTGGACGTCGGCTCGGGCACCGACATCCTCTGCATGTTTG < 41bp 0.729680151385038 0.487216998139597 0.19858584 0.061967343 prediction 0.459360302770076 Functional Loss - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50185270 chr19:50185273 nonsynonymous SNV 0.604 5 24 hm5C_associated_SNPs_75230 0 0 1 0 1 PRMT1 chr19:50185322 5'GT 50185322 Upstream 50bp
chr20 30232619 30232619 1 + A C PAAD 30232615 + 30232595 30232635 41 TGACGGACGAGCGGAAAGCCCAGCAGCTGCAGCGCATGCTG TGACGGACGAGCGGAAAGCCCAGCCGCTGCAGCGCATGCTG < 41bp 0.933333309448647 0.703657093876943 0.28338093 0.08504513 prediction 0.459352431143408 Functional Loss - COX4I2 ENSG00000131055 CDS Human protein_coding chr20:30232615 chr20:30232619 nonsynonymous SNV 0.982 4 25 hm5C_associated_SNPs_75233 0 0 0 0 1 COX4I2 chr20:30232571 3'AG 30232571 Downstream 49bp
chr19 1453530 1453530 1 + C T COAD 1453528 + 1453508 1453548 41 CCCCCGAGGGCAGCCCAGTACACGGCTCCGGGCCCTCCAAG CCCCCGAGGGCAGCCCAGTACATGGCTCCGGGCCCTCCAAG < 41bp 0.746321287101612 0.516645758953025 0.761537 0.38136485 prediction 0.459351056297173 Functional Loss - APC2 ENSG00000115266 CDS Human protein_coding chr19:1453528 chr19:1453530 synonymous SNV . 0 23 hm5C_associated_SNPs_75234 0 0 0 0 1 APC2 chr19:1453610 5'GT 1453610 Upstream 81bp
chr7 98889977 98889977 1 + G A rs538629145 98889974 + 98889954 98889994 41 TGAGTCTGGCCAACACCAAGCACGACCTGGACCTAGTAAAG TGAGTCTGGCCAACACCAAGCACAACCTGGACCTAGTAAAG < 41bp 0.75607627286913 0.52640080505022 0.10324535 0.086902976 prediction 0.459350935637821 Functional Loss - MYH16 ENSG00000002079 ncRNA_exonic Human transcribed_unitary_pseudogene chr7:98889974 chr7:98889977 . . 0 24 hm5C_associated_SNPs_75235 0 0 0 0 1 MYH16 chr7:98889935 3'AG 98889935 Downstream 43bp
chr19 11024628 11024628 1 + G A UCEC 11024625 + 11024605 11024645 41 AGGTGGAGGAGGTGTCACTCCCCGAGCAGGTGGACATCATC AGGTGGAGGAGGTGTCACTCCCCAAGCAGGTGGACATCATC < 41bp 0.757669110595331 0.527998492215049 0.33805394 0.07415837 prediction 0.459341236760564 Functional Loss - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11024625 chr19:11024628 nonsynonymous SNV 0.720 2 24 hm5C_associated_SNPs_75238 0 0 1 0 1 CARM1 chr19:11024553 3'AG 11024553 Downstream 76bp
chr17 1636853 1636853 1 + G A BLCA 1636850 + 1636830 1636870 41 TCCGGAAAATCATCCCCAACCACGAGCTGGTTGGGGAGCTG TCCGGAAAATCATCCCCAACCACAAGCTGGTTGGGGAGCTG < 41bp 0.729667738344347 0.496251095620178 0.5532601 0.30078936 prediction 0.459335476688694 Functional Loss - WDR81 ENSG00000167716 CDS Human protein_coding chr17:1636850 chr17:1636853 nonsynonymous SNV 0.898 0 24 hm5C_associated_SNPs_75240 0 0 0 0 1 WDR81 chr17:1636821 3'AG 1636821 Downstream 33bp
chr2 54014488 54014488 1 + G A UCEC 54014485 + 54014465 54014505 41 GACATCCCTTTCCGAGTCAACTGGCCCGGCACCGAGTTCTC GACATCCCTTTCCGAGTCAACTGACCCGGCACCGAGTTCTC < 41bp 0.729664001257316 0.489983532665076 0.13888735 0.048131853 prediction 0.459328002514632 Functional Loss - ERLEC1 ENSG00000068912 CDS Human protein_coding chr2:54014485 chr2:54014488 stopgain 0.999 1 24 hm5C_associated_SNPs_75242 0 0 1 0 1 ERLEC1 chr2:54014509 5'GT 54014509 Upstream 22bp
chr5 43277235 43277235 1 + C T SKCM 43277232 + 43277212 43277252 41 AGGCTACTATCCCGAGAAATCTCCAGCATGGAAAAGCTGCA AGGCTACTATCCCGAGAAATCTCTAGCATGGAAAAGCTGCA < 41bp 0.74010203401833 0.510438704475349 0.948452 0.36851686 prediction 0.459326659085962 Functional Loss - NIM1K ENSG00000177453 CDS Human protein_coding chr5:43277232 chr5:43277235 synonymous SNV . 0 24 hm5C_associated_SNPs_75243 0 0 0 0 1 NIM1K chr5:43277159 3'AG 43277159 Downstream 77bp
chr22 37326802 37326802 1 + G A SKCM 37326799 + 37326779 37326819 41 CAGATTCCCGTGCCCGACCCCGCGACCCACGGCCAATACAT CAGATTCCCGTGCCCGACCCCGCAACCCACGGCCAATACAT < 41bp 0.795432829385377 0.565771309293083 0.34935886 0.22691041 prediction 0.459323040184587 Functional Loss - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37326799 chr22:37326802 synonymous SNV . 0 24 hm5C_associated_SNPs_75247 0 0 0 0 2 CSF2RB chr22:37326715 3'AG 37326715 Downstream 88bp
chr22 37326802 37326802 1 + G A SKCM 37326799 + 37326779 37326819 41 CAGATTCCCGTGCCCGACCCCGCGACCCACGGCCAATACAT CAGATTCCCGTGCCCGACCCCGCAACCCACGGCCAATACAT < 41bp 0.795432829385377 0.565771309293083 0.34935886 0.22691041 prediction 0.459323040184587 Functional Loss - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37326799 chr22:37326802 synonymous SNV . 0 24 hm5C_associated_SNPs_75247 0 0 0 0 2 CSF2RB chr22:37326872 5'GT 37326872 Upstream 71bp
chr11 92714707 92714707 1 + G A STAD 92714704 + 92714684 92714724 41 GTGGCCATCTTCTATGACGGCTGGGCCCTGGGGGAGGAGCA GTGGCCATCTTCTATGACGGCTGAGCCCTGGGGGAGGAGCA < 41bp 0.761895461468552 0.532236693701599 0.07152474 0.04647875 prediction 0.459317535533905 Functional Loss - MTNR1B ENSG00000134640 CDS Human protein_coding chr11:92714704 chr11:92714707 stopgain 0.066 1 24 hm5C_associated_SNPs_75249 0 0 0 0 1 MTNR1B chr11:92714613 3'AG 92714613 Downstream 95bp
chr11 60701973 60701973 1 + G C rs564634397 60701972 + 60701952 60701992 41 CCCTGCAGGCCTGCGGAACCCGCTGCAGAGGCGTCGGATGA CCCTGCAGGCCTGCGGAACCCCCTGCAGAGGCGTCGGATGA < 41bp 0.729657692576825 0.485156546390323 0.19692183 0.24211082 prediction 0.459315385153649 Functional Loss - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60701972 chr11:60701973 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_75250 0 0 0 0 1 TMEM132A chr11:60701960 3'AG 60701960 Downstream 14bp
chr12 52695783 52695783 1 + C T SKCM 52695781 + 52695761 52695801 41 CGGCCCGGCCGCTGCTGCATCACCGCCGCCCCCTACCGTGG CGGCCCGGCCGCTGCTGCATCATCGCCGCCCCCTACCGTGG < 41bp 0.781553793303013 0.551899084177606 0.2607835 0.3139543 prediction 0.459309418250814 Functional Loss - KRT86 ENSG00000170442 CDS Human protein_coding chr12:52695781 chr12:52695783 nonsynonymous SNV 0.097 2 23 hm5C_associated_SNPs_75252 0 0 0 0 1 KRT86 chr12:52695697 3'AG 52695697 Downstream 87bp
chr4 166414410 166414410 1 + G T LUAD 166414407 + 166414387 166414427 41 TCTCCGTGGAAGGAATAGACCACGATGTTACATCCGGTGGG TCTCCGTGGAAGGAATAGACCACTATGTTACATCCGGTGGG < 41bp 0.921038721668932 0.691388238457834 0.18987498 0.13314125 prediction 0.459300966422196 Functional Loss - CPE ENSG00000109472 CDS Human protein_coding chr4:166414407 chr4:166414410 nonsynonymous SNV 0.356 4 24 hm5C_associated_SNPs_75255 0 0 1 0 2 CPE chr4:166414323 3'AG 166414323 Downstream 88bp
chr4 166414410 166414410 1 + G T LUAD 166414407 + 166414387 166414427 41 TCTCCGTGGAAGGAATAGACCACGATGTTACATCCGGTGGG TCTCCGTGGAAGGAATAGACCACTATGTTACATCCGGTGGG < 41bp 0.921038721668932 0.691388238457834 0.18987498 0.13314125 prediction 0.459300966422196 Functional Loss - CPE ENSG00000109472 CDS Human protein_coding chr4:166414407 chr4:166414410 nonsynonymous SNV 0.356 4 24 hm5C_associated_SNPs_75255 0 0 1 0 2 CPE chr4:166414422 5'GT 166414422 Upstream 13bp
chr1 17266532 17266532 1 + C T SKCM 17266530 + 17266510 17266550 41 CCGACGGCGCCATGCAGGCCCACGAGGACGCCCAGCGCGAG CCGACGGCGCCATGCAGGCCCATGAGGACGCCCAGCGCGAG < 41bp 0.79535474569327 0.565704695518839 0.7562836 0.7740263 prediction 0.459300100348862 Functional Loss - CROCC ENSG00000058453 CDS Human protein_coding chr1:17266530 chr1:17266532 synonymous SNV . 0 23 hm5C_associated_SNPs_75257 0 0 0 0 1 CROCC chr1:17266588 5'GT 17266588 Upstream 57bp
chr2 177017353 177017353 1 + G C LUAD 177017349 + 177017329 177017369 41 CTCGCAGTGAACCCCAACTACACCGGTGGGGAACCCAAGCG CTCGCAGTGAACCCCAACTACACCCGTGGGGAACCCAAGCG < 41bp 0.839193257269495 0.609547488588625 0.73991406 0.3881268 prediction 0.459291537361741 Functional Loss - HOXD4 ENSG00000170166 CDS Human protein_coding chr2:177017349 chr2:177017353 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_75258 0 0 0 0 1 HOXD4 chr2:177017336 3'AG 177017336 Downstream 18bp
chr17 79973232 79973232 1 + G A BLCA 79973229 + 79973209 79973249 41 CACAAGCACGTGGGGACAGGCCGGGTAGGCTGCCTGGCTCA CACAAGCACGTGGGGACAGGCCGAGTAGGCTGCCTGGCTCA < 41bp 0.771512847817126 0.541869317479806 0.87235534 0.65780795 prediction 0.45928706067464 Functional Loss - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79973229 chr17:79973232 synonymous SNV . 0 24 hm5C_associated_SNPs_75261 0 0 1 0 1 ASPSCR1 chr17:79973232 5'GT 79973232 Upstream 1bp
chr22 30769639 30769639 1 + G T SARC 30769637 + 30769617 30769657 41 AGCAGCTGGACAGCCTGGACCAGGAACGTGAGGAGCTGCGG AGCAGCTGGACAGCCTGGACCATGAACGTGAGGAGCTGCGG < 41bp 0.908245878308551 0.678607715581666 0.8597032 0.16450572 prediction 0.45927632545377 Functional Loss - CCDC157 ENSG00000187860 CDS Human protein_coding chr22:30769637 chr22:30769639 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_75264 0 0 0 0 1 CCDC157 chr22:30769586 3'AG 30769586 Downstream 54bp
chr4 1807812 1807812 1 + T C OV 1807811 + 1807791 1807831 41 ACCTGGCTGCCCGCAATGTGCTGGTGACCGAGGACAACGTG ACCTGGCTGCCCGCAATGTGCCGGTGACCGAGGACAACGTG < 41bp 0.729634679131356 0.483205897720668 0.22003412 0.2725078 prediction 0.459269358262713 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1807811 chr4:1807812 nonsynonymous SNV 0.843 5 22 hm5C_associated_SNPs_75268 0 0 1 0 2 FGFR3 chr4:1807778 3'AG 1807778 Downstream 35bp
chr4 1807812 1807812 1 + T C OV 1807811 + 1807791 1807831 41 ACCTGGCTGCCCGCAATGTGCTGGTGACCGAGGACAACGTG ACCTGGCTGCCCGCAATGTGCCGGTGACCGAGGACAACGTG < 41bp 0.729634679131356 0.483205897720668 0.22003412 0.2725078 prediction 0.459269358262713 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1807811 chr4:1807812 nonsynonymous SNV 0.843 5 22 hm5C_associated_SNPs_75268 0 0 1 0 2 FGFR3 chr4:1807900 5'GT 1807900 Upstream 89bp
chr10 30749693 30749693 1 + C T HNSC 30749691 + 30749671 30749711 41 TGCTCAAGAGGCAACGCTCTCTCTACATCGACCTCGGCGCT TGCTCAAGAGGCAACGCTCTCTTTACATCGACCTCGGCGCT < 41bp 0.72962873888007 0.442365384827696 0.83076704 0.082791746 prediction 0.459257477760139 Functional Loss - MAP3K8 ENSG00000107968 CDS Human protein_coding chr10:30749691 chr10:30749693 synonymous SNV . 0 23 hm5C_associated_SNPs_75274 0 0 0 0 1 MAP3K8 chr10:30749635 3'AG 30749635 Downstream 59bp
chr19 4769731 4769731 1 + G A rs376626440 4769728 + 4769708 4769748 41 GGGCTCAGGACAGTTCCCAGCGGGCTCCGTTTCGTCTCCAG GGGCTCAGGACAGTTCCCAGCGGACTCCGTTTCGTCTCCAG < 41bp 0.77709854049807 0.547471767471385 0.9241444 0.8592676 prediction 0.459253546053369 Functional Loss - MIR7-3HG ENSG00000176840 ncRNA_exonic Human lincRNA chr19:4769728 chr19:4769731 . . 0 24 hm5C_associated_SNPs_75275 0 0 0 1 2 MIR7-3HG chr19:4769642 3'AG 4769642 Downstream 90bp
chr19 4769731 4769731 1 + G A rs376626440 4769728 + 4769708 4769748 41 GGGCTCAGGACAGTTCCCAGCGGGCTCCGTTTCGTCTCCAG GGGCTCAGGACAGTTCCCAGCGGACTCCGTTTCGTCTCCAG < 41bp 0.77709854049807 0.547471767471385 0.9241444 0.8592676 prediction 0.459253546053369 Functional Loss - MIR7-3HG ENSG00000176840 ncRNA_exonic Human lincRNA chr19:4769728 chr19:4769731 . . 0 24 hm5C_associated_SNPs_75275 0 0 0 1 2 MIR7-3HG chr19:4769769 5'GT 4769769 Upstream 39bp
chr10 103988663 103988663 1 + C T UCEC 103988661 + 103988641 103988681 41 CACAGCACAGTGCTCGTGTACACAAGCTTTGGATACAAGAA CACAGCACAGTGCTCGTGTACATAAGCTTTGGATACAAGAA < 41bp 0.729621857825405 0.45357987264827 0.046871513 0.06148556 prediction 0.45924371565081 Functional Loss - ELOVL3 ENSG00000119915 CDS Human protein_coding chr10:103988661 chr10:103988663 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_75278 0 0 0 0 1 ELOVL3 chr10:103988582 3'AG 103988582 Downstream 82bp
chr11 47296686 47296686 1 + T C UCEC 47296685 + 47296665 47296705 41 AGCGCCTTCTGGGCAAGAAACTGGGCATCCCTCGAGGCGTA AGCGCCTTCTGGGCAAGAAACCGGGCATCCCTCGAGGCGTA < 41bp 0.729620861506957 0.494281082117909 0.9065738 0.8944122 prediction 0.459241723013914 Functional Loss - MADD ENSG00000110514 CDS Human protein_coding chr11:47296685 chr11:47296686 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_75280 0 0 1 0 1 MADD chr11:47296710 5'GT 47296710 Upstream 25bp
chr1 151239676 151239676 1 + G T OV 151239673 + 151239653 151239693 41 AGGATGATTACGACGTGATGCAGGACCCCGAGTTCCTTCAG AGGATGATTACGACGTGATGCAGTACCCCGAGTTCCTTCAG < 41bp 0.925475834094679 0.695855755482266 0.7395831 0.22348216 prediction 0.459240157224826 Functional Loss - PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151239673 chr1:151239676 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_75281 0 0 1 0 1 PSMD4 chr1:151239649 3'AG 151239649 Downstream 28bp
chr12 133727701 133727701 1 + A T SKCM 133727697 + 133727677 133727717 41 ACTGCTCAGCAGATCGTGTACAGAAATGTGATGCTGGAGAA ACTGCTCAGCAGATCGTGTACAGATATGTGATGCTGGAGAA < 41bp 0.874110088002451 0.644491679203227 0.3831554 0.34003595 prediction 0.459236817598448 Functional Loss - ZNF10 ENSG00000090612;ENSG00000256223;ENSG00000256825 CDS Human other chr12:133727697 chr12:133727701 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_75282 0 0 1 0 2 ZNF10 chr12:133727614 3'AG 133727614 Downstream 88bp
chr12 133727701 133727701 1 + A T SKCM 133727697 + 133727677 133727717 41 ACTGCTCAGCAGATCGTGTACAGAAATGTGATGCTGGAGAA ACTGCTCAGCAGATCGTGTACAGATATGTGATGCTGGAGAA < 41bp 0.874110088002451 0.644491679203227 0.3831554 0.34003595 prediction 0.459236817598448 Functional Loss - ZNF10 ENSG00000090612;ENSG00000256223;ENSG00000256825 CDS Human other chr12:133727697 chr12:133727701 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_75282 0 0 1 0 2 ZNF10 chr12:133727740 5'GT 133727740 Upstream 40bp
chr1 65614225 65614225 1 + G A UCEC 65614222 + 65614202 65614242 41 CACTTCTTGCGGGAGAACATCAAGGCCAGCACCGGTGAGGG CACTTCTTGCGGGAGAACATCAAAGCCAGCACCGGTGAGGG < 41bp 0.786717517578952 0.557104115165086 0.92349106 0.5218541 prediction 0.459226804827732 Functional Loss - AK4 ENSG00000162433 CDS Human protein_coding chr1:65614222 chr1:65614225 synonymous SNV . 0 24 hm5C_associated_SNPs_75284 0 0 0 0 1 AK4 chr1:65614235 5'GT 65614235 Upstream 11bp
chr3 108394705 108394705 1 + G T UCEC 108394702 + 108394682 108394722 41 ATTGTGGCAGATGTTAGAAACAAGATTGCATTCCTCAGGGT ATTGTGGCAGATGTTAGAAACAATATTGCATTCCTCAGGGT < 41bp 0.729612983453262 0.346061935269412 0.40025946 0.4343441 prediction 0.459225966906524 Functional Loss - DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108394702 chr3:108394705 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_75286 0 0 1 0 1 DZIP3 chr3:108394633 3'AG 108394633 Downstream 73bp
chr6 42658866 42658866 1 + G T COAD 42658864 + 42658844 42658884 41 CAGAGGAAATTGGACATGCACAGGAAGCCAATCAGACACTG CAGAGGAAATTGGACATGCACATGAAGCCAATCAGACACTG < 41bp 0.729611691010313 0.425161094832136 0.63207823 0.11442295 prediction 0.459223382020625 Functional Loss - UBR2 ENSG00000024048 CDS Human protein_coding chr6:42658864 chr6:42658866 nonsynonymous SNV 0.956 3 23 hm5C_associated_SNPs_75287 0 0 1 2 1 UBR2 chr6:42658770 3'AG 42658770 Downstream 97bp
chr1 203472730 203472730 1 + A C LUSC 203472729 + 203472709 203472749 41 TCTTCTGTGACCCCGAGGAGCACAAACACACCCGCAGGCAG TCTTCTGTGACCCCGAGGAGCCCAAACACACCCGCAGGCAG < 41bp 0.729609699899459 0.466404591011984 0.102201134 0.17145613 prediction 0.459219399798918 Functional Loss - OPTC ENSG00000188770 CDS Human protein_coding chr1:203472729 chr1:203472730 nonsynonymous SNV 0.423 0 22 hm5C_associated_SNPs_75289 0 0 0 0 1 OPTC chr1:203472678 3'AG 203472678 Downstream 53bp
chr6 36566754 36566754 1 + G A UCS 36566751 + 36566731 36566771 41 TCGTAGGAGGAGTCCTCCACCTCGTCGCAGGTACTTGAGAG TCGTAGGAGGAGTCCTCCACCTCATCGCAGGTACTTGAGAG < 41bp 0.731473182105942 0.501864728931255 0.34958375 0.28299314 prediction 0.459216906349375 Functional Loss - SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36566751 chr6:36566754 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_75290 0 0 1 0 1 SRSF3 chr6:36566760 5'GT 36566760 Upstream 7bp
chr11 2608873 2608873 1 + G T LUSC 2608871 + 2608851 2608891 41 ATCTACATCCGGAAGGCCCCCCGGAGCCACACTCTGCTGTC ATCTACATCCGGAAGGCCCCCCTGAGCCACACTCTGCTGTC < 41bp 0.729607504769373 0.379723499048437 0.86879647 0.13636911 prediction 0.459215009538747 Functional Loss - KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2608871 chr11:2608873 nonsynonymous SNV 0.057 1 23 hm5C_associated_SNPs_75291 0 0 0 0 2 KCNQ1 chr11:2608800 3'AG 2608800 Downstream 74bp
chr11 2608873 2608873 1 + G T LUSC 2608871 + 2608851 2608891 41 ATCTACATCCGGAAGGCCCCCCGGAGCCACACTCTGCTGTC ATCTACATCCGGAAGGCCCCCCTGAGCCACACTCTGCTGTC < 41bp 0.729607504769373 0.379723499048437 0.86879647 0.13636911 prediction 0.459215009538747 Functional Loss - KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2608871 chr11:2608873 nonsynonymous SNV 0.057 1 23 hm5C_associated_SNPs_75291 0 0 0 0 2 KCNQ1 chr11:2608922 5'GT 2608922 Upstream 50bp
chr1 112020365 112020365 1 + G T COAD 112020362 + 112020342 112020382 41 TGGCAGATCACTCCAAGCCCCAGGCCCCAGATCCTCACTCA TGGCAGATCACTCCAAGCCCCAGTCCCCAGATCCTCACTCA < 41bp 0.729600989451127 0.326830818301163 0.3986764 0.09300715 prediction 0.459201978902254 Functional Loss - C1orf162 ENSG00000143110 CDS Human protein_coding chr1:112020362 chr1:112020365 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_75295 0 0 0 0 2 C1orf162 chr1:112020273 3'AG 112020273 Downstream 93bp
chr1 112020365 112020365 1 + G T COAD 112020362 + 112020342 112020382 41 TGGCAGATCACTCCAAGCCCCAGGCCCCAGATCCTCACTCA TGGCAGATCACTCCAAGCCCCAGTCCCCAGATCCTCACTCA < 41bp 0.729600989451127 0.326830818301163 0.3986764 0.09300715 prediction 0.459201978902254 Functional Loss - C1orf162 ENSG00000143110 CDS Human protein_coding chr1:112020362 chr1:112020365 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_75295 0 0 0 0 2 C1orf162 chr1:112020397 5'GT 112020397 Upstream 33bp
chr1 26515118 26515118 1 + C T SKCM 26515116 + 26515096 26515136 41 CTGCTCAAGCTGGGAGTCCCCTCCATGGAGACACATCACCT CTGCTCAAGCTGGGAGTCCCCTTCATGGAGACACATCACCT < 41bp 0.852352784284403 0.622754015389209 0.9632545 0.17987868 prediction 0.459197537790386 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26515116 chr1:26515118 synonymous SNV . 0 23 hm5C_associated_SNPs_75298 0 0 0 0 2 CNKSR1 chr1:26515089 3'AG 26515089 Downstream 30bp
chr1 26515118 26515118 1 + C T SKCM 26515116 + 26515096 26515136 41 CTGCTCAAGCTGGGAGTCCCCTCCATGGAGACACATCACCT CTGCTCAAGCTGGGAGTCCCCTTCATGGAGACACATCACCT < 41bp 0.852352784284403 0.622754015389209 0.9632545 0.17987868 prediction 0.459197537790386 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26515116 chr1:26515118 synonymous SNV . 0 23 hm5C_associated_SNPs_75298 0 0 0 0 2 CNKSR1 chr1:26515188 5'GT 26515188 Upstream 71bp
chr7 89982168 89982168 1 + G T LUSC 89982165 + 89982145 89982185 41 GATAAGCTAAGACTCTTCACCAGGGGAGGATCCGGTGGAAT GATAAGCTAAGACTCTTCACCAGTGGAGGATCCGGTGGAAT < 41bp 0.729598429581784 0.345285569838197 0.90289974 0.25802332 prediction 0.459196859163567 Functional Loss - GTPBP10 ENSG00000105793 CDS Human protein_coding chr7:89982165 chr7:89982168 nonsynonymous SNV 0.665 0 24 hm5C_associated_SNPs_75299 0 0 1 0 1 GTPBP10 chr7:89982130 3'AG 89982130 Downstream 39bp
chr6 32008281 32008281 1 + C T LUAD 32008279 + 32008259 32008299 41 ACCGTGCACGGCTGCCCTTGCTCAATGCCACCATCGCCGAG ACCGTGCACGGCTGCCCTTGCTTAATGCCACCATCGCCGAG < 41bp 0.760820289278285 0.531225744461624 0.93499 0.4880189 prediction 0.459189089633322 Functional Loss - CYP21A2 ENSG00000231852 CDS Human protein_coding chr6:32008279 chr6:32008281 synonymous SNV . 0 23 hm5C_associated_SNPs_75301 0 0 0 0 2 CYP21A2 chr6:32008183 3'AG 32008183 Downstream 99bp
chr6 32008281 32008281 1 + C T LUAD 32008279 + 32008259 32008299 41 ACCGTGCACGGCTGCCCTTGCTCAATGCCACCATCGCCGAG ACCGTGCACGGCTGCCCTTGCTTAATGCCACCATCGCCGAG < 41bp 0.760820289278285 0.531225744461624 0.93499 0.4880189 prediction 0.459189089633322 Functional Loss - CYP21A2 ENSG00000231852 CDS Human protein_coding chr6:32008279 chr6:32008281 synonymous SNV . 0 23 hm5C_associated_SNPs_75301 0 0 0 0 2 CYP21A2 chr6:32008361 5'GT 32008361 Upstream 81bp
chr2 150061860 150061860 1 + A C OV 150061859 + 150061839 150061879 41 TGTCCAGATCGTTATCTTCTCAGAAAGCTGGGCATTTGCCA TGTCCAGATCGTTATCTTCTCCGAAAGCTGGGCATTTGCCA < 41bp 0.729592666564889 0.458675954456178 0.28573617 0.047383606 prediction 0.459185333129778 Functional Loss - LYPD6B ENSG00000150556 CDS Human protein_coding chr2:150061859 chr2:150061860 synonymous SNV . 0 22 hm5C_associated_SNPs_75303 0 0 0 0 2 LYPD6B chr2:150061767 3'AG 150061767 Downstream 94bp
chr2 150061860 150061860 1 + A C OV 150061859 + 150061839 150061879 41 TGTCCAGATCGTTATCTTCTCAGAAAGCTGGGCATTTGCCA TGTCCAGATCGTTATCTTCTCCGAAAGCTGGGCATTTGCCA < 41bp 0.729592666564889 0.458675954456178 0.28573617 0.047383606 prediction 0.459185333129778 Functional Loss - LYPD6B ENSG00000150556 CDS Human protein_coding chr2:150061859 chr2:150061860 synonymous SNV . 0 22 hm5C_associated_SNPs_75303 0 0 0 0 2 LYPD6B chr2:150061918 5'GT 150061918 Upstream 59bp
chr19 45849946 45849946 1 + G C CESC 45849942 + 45849922 45849962 41 CAGCGGCGGCTTCGGGCCAGCGAGGAGTCCGTGGCCCAGCT CAGCGGCGGCTTCGGGCCAGCGAGCAGTCCGTGGCCCAGCT < 41bp 0.863175642892857 0.633592931150122 0.896751 0.8361372 prediction 0.459165423485469 Functional Loss - KLC3 ENSG00000104892 CDS Human protein_coding chr19:45849942 chr19:45849946 nonsynonymous SNV 0.957 1 25 hm5C_associated_SNPs_75309 0 0 0 0 1 KLC3 chr19:45850032 5'GT 45850032 Upstream 87bp
chr5 132015485 132015485 1 + G A STAD 132015482 + 132015462 132015502 41 CAGCCACCATGAGAAGGACACTCGCTGCCTGGGTGCGACTG CAGCCACCATGAGAAGGACACTCACTGCCTGGGTGCGACTG < 41bp 0.776455006085866 0.546879522017572 0.2270926 0.07874569 prediction 0.459150968136588 Functional Loss - IL4 ENSG00000113520 CDS Human protein_coding chr5:132015482 chr5:132015485 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_75313 0 0 0 0 2 IL4 chr5:132015406 3'AG 132015406 Downstream 80bp
chr5 132015485 132015485 1 + G A STAD 132015482 + 132015462 132015502 41 CAGCCACCATGAGAAGGACACTCGCTGCCTGGGTGCGACTG CAGCCACCATGAGAAGGACACTCACTGCCTGGGTGCGACTG < 41bp 0.776455006085866 0.546879522017572 0.2270926 0.07874569 prediction 0.459150968136588 Functional Loss - IL4 ENSG00000113520 CDS Human protein_coding chr5:132015482 chr5:132015485 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_75313 0 0 0 0 2 IL4 chr5:132015582 5'GT 132015582 Upstream 98bp
chrX 128926745 128926745 1 + G C HNSC 128926744 + 128926724 128926764 41 GGCATGCCCGCCCCAGCCGCCGACAGAGCAAGGGCAAGAGG GGCATGCCCGCCCCAGCCGCCCACAGAGCAAGGGCAAGAGG < 41bp 0.729574910192512 0.399037349636361 0.3158029 0.06728527 prediction 0.459149820385024 Functional Loss - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128926744 chrX:128926745 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_75314 0 0 0 0 1 SASH3 chrX:128926812 5'GT 128926812 Upstream 68bp
chr1 15766841 15766841 1 + G A COAD 15766838 + 15766818 15766858 41 CTTCCCGCCCAACCTATCCGCCCGAGTGGTGGGAGGAGAGG CTTCCCGCCCAACCTATCCGCCCAAGTGGTGGGAGGAGAGG < 41bp 0.763140915978693 0.53356618914054 0.065467685 0.10699114 prediction 0.459149453676306 Functional Loss - CTRC ENSG00000162438 CDS Human protein_coding chr1:15766838 chr1:15766841 nonsynonymous SNV 0.004 5 24 hm5C_associated_SNPs_75315 0 0 0 0 2 CTRC chr1:15766796 3'AG 15766796 Downstream 46bp
chr1 15766841 15766841 1 + G A COAD 15766838 + 15766818 15766858 41 CTTCCCGCCCAACCTATCCGCCCGAGTGGTGGGAGGAGAGG CTTCCCGCCCAACCTATCCGCCCAAGTGGTGGGAGGAGAGG < 41bp 0.763140915978693 0.53356618914054 0.065467685 0.10699114 prediction 0.459149453676306 Functional Loss - CTRC ENSG00000162438 CDS Human protein_coding chr1:15766838 chr1:15766841 nonsynonymous SNV 0.004 5 24 hm5C_associated_SNPs_75315 0 0 0 0 2 CTRC chr1:15766887 5'GT 15766887 Upstream 47bp
chr1 79128476 79128476 1 + G T LUAD 79128474 + 79128454 79128494 41 CTCTGAGTGGGAGCTGGACCCTGTAAAGGATGTTCTAATTC CTCTGAGTGGGAGCTGGACCCTTTAAAGGATGTTCTAATTC < 41bp 0.729574441308278 0.410948522990273 0.08015111 0.08076972 prediction 0.459148882616555 Functional Loss - IFI44 ENSG00000137965 CDS Human protein_coding chr1:79128474 chr1:79128476 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_75316 0 0 0 0 2 IFI44 chr1:79128389 3'AG 79128389 Downstream 88bp
chr1 79128476 79128476 1 + G T LUAD 79128474 + 79128454 79128494 41 CTCTGAGTGGGAGCTGGACCCTGTAAAGGATGTTCTAATTC CTCTGAGTGGGAGCTGGACCCTTTAAAGGATGTTCTAATTC < 41bp 0.729574441308278 0.410948522990273 0.08015111 0.08076972 prediction 0.459148882616555 Functional Loss - IFI44 ENSG00000137965 CDS Human protein_coding chr1:79128474 chr1:79128476 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_75316 0 0 0 0 2 IFI44 chr1:79128563 5'GT 79128563 Upstream 88bp
chr15 67713775 67713775 1 - G A CESC 67713777 - 67713757 67713797 41 GGATCCACTGAGGTCTGAGGCACGGTGGTACCAGAGGAGAT GGATCCACTGAGGTCTGAGGCATGGTGGTACCAGAGGAGAT < 41bp 0.729573566969633 0.463703790484929 0.37154996 0.3002626 prediction 0.459147133939266 Functional Loss - IQCH ENSG00000103599 CDS Human protein_coding chr15:67713777 chr15:67713775 nonsynonymous SNV 0.817 0 23 hm5C_associated_SNPs_75318 0 0 0 0 1 IQCH chr15:67713836 3'AG 67713836 Downstream 62bp
chr22 37325463 37325463 1 + G A SKCM 37325460 + 37325440 37325480 41 CCAGTCCAGCCTCCTGAGCCCAGGGACCTGCAGATCAGCAC CCAGTCCAGCCTCCTGAGCCCAGAGACCTGCAGATCAGCAC < 41bp 0.77678800341026 0.547218679605749 0.41681984 0.3549891 prediction 0.459138647609021 Functional Loss - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37325460 chr22:37325463 synonymous SNV . 0 24 hm5C_associated_SNPs_75321 0 0 0 0 1 CSF2RB chr22:37325444 3'AG 37325444 Downstream 20bp
chr6 43488442 43488442 1 + G A STAD 43488439 + 43488419 43488459 41 GACATCACCCTGCTTGAGCCCGTGGAAGGGGAGGCAGCTGA GACATCACCCTGCTTGAGCCCGTAGAAGGGGAGGCAGCTGA < 41bp 0.7576046115011 0.528038314389804 0.3625831 0.17819458 prediction 0.459132594222593 Functional Loss - POLR1C ENSG00000171453 CDS Human protein_coding chr6:43488439 chr6:43488442 synonymous SNV . 0 24 hm5C_associated_SNPs_75322 0 0 1 0 2 POLR1C chr6:43488363 3'AG 43488363 Downstream 80bp
chr6 43488442 43488442 1 + G A STAD 43488439 + 43488419 43488459 41 GACATCACCCTGCTTGAGCCCGTGGAAGGGGAGGCAGCTGA GACATCACCCTGCTTGAGCCCGTAGAAGGGGAGGCAGCTGA < 41bp 0.7576046115011 0.528038314389804 0.3625831 0.17819458 prediction 0.459132594222593 Functional Loss - POLR1C ENSG00000171453 CDS Human protein_coding chr6:43488439 chr6:43488442 synonymous SNV . 0 24 hm5C_associated_SNPs_75322 0 0 1 0 2 POLR1C chr6:43488512 5'GT 43488512 Upstream 71bp
chr6 32359469 32359469 1 + A T rs146487240 32359465 + 32359445 32359485 41 ATGAGTGATCCGCATGGGACCGCGATGCCTCTGACGTCTGC ATGAGTGATCCGCATGGGACCGCGTTGCCTCTGACGTCTGC < 41bp 0.729562077847575 0.462553060840125 0.36141643 0.16722307 prediction 0.45912415569515 Functional Loss - HCG23 ENSG00000228962 ncRNA_exonic Human antisense chr6:32359465 chr6:32359469 . . 0 25 hm5C_associated_SNPs_75323 0 0 0 0 2 HCG23 chr6:32359390 3'AG 32359390 Downstream 80bp
chr6 32359469 32359469 1 + A T rs146487240 32359465 + 32359445 32359485 41 ATGAGTGATCCGCATGGGACCGCGATGCCTCTGACGTCTGC ATGAGTGATCCGCATGGGACCGCGTTGCCTCTGACGTCTGC < 41bp 0.729562077847575 0.462553060840125 0.36141643 0.16722307 prediction 0.45912415569515 Functional Loss - HCG23 ENSG00000228962 ncRNA_exonic Human antisense chr6:32359465 chr6:32359469 . . 0 25 hm5C_associated_SNPs_75323 0 0 0 0 2 HCG23 chr6:32359517 5'GT 32359517 Upstream 49bp
chr11 1009762 1009762 1 + C T COAD 1009760 + 1009740 1009780 41 GTGGGAGCTGGAATCATCCACACGAAAACCACCCAGATTGG GTGGGAGCTGGAATCATCCACATGAAAACCACCCAGATTGG < 41bp 0.729560620762889 0.453514094444193 0.32884994 0.348253 prediction 0.459121241525779 Functional Loss - AP2A2 ENSG00000183020 CDS Human protein_coding chr11:1009760 chr11:1009762 nonsynonymous SNV 0.989 2 23 hm5C_associated_SNPs_75325 0 0 1 0 2 AP2A2 chr11:1009683 3'AG 1009683 Downstream 80bp
chr11 1009762 1009762 1 + C T COAD 1009760 + 1009740 1009780 41 GTGGGAGCTGGAATCATCCACACGAAAACCACCCAGATTGG GTGGGAGCTGGAATCATCCACATGAAAACCACCCAGATTGG < 41bp 0.729560620762889 0.453514094444193 0.32884994 0.348253 prediction 0.459121241525779 Functional Loss - AP2A2 ENSG00000183020 CDS Human protein_coding chr11:1009760 chr11:1009762 nonsynonymous SNV 0.989 2 23 hm5C_associated_SNPs_75325 0 0 1 0 2 AP2A2 chr11:1009817 5'GT 1009817 Upstream 56bp
chr3 127398982 127398982 1 + G A UCEC 127398979 + 127398959 127398999 41 GGCCAAGCTCTTCCGCCTGGCGCGGCTTGAGGACCAGTGCA GGCCAAGCTCTTCCGCCTGGCGCAGCTTGAGGACCAGTGCA < 41bp 0.780214354822503 0.550654082658082 0.8407481 0.5435326 prediction 0.459120544328841 Functional Loss - ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127398979 chr3:127398982 nonsynonymous SNV 0.533 4 24 hm5C_associated_SNPs_75326 0 0 0 0 1 ABTB1 chr3:127399028 5'GT 127399028 Upstream 47bp
chr16 57394419 57394419 1 + C T rs371008561 57394417 + 57394397 57394437 41 TCCGTTACCGTCTGCCCCTGCGCGTGGTGAAACACTTCTAC TCCGTTACCGTCTGCCCCTGCGTGTGGTGAAACACTTCTAC < 41bp 0.729556794277163 0.459379117164363 0.3982808 0.53226 prediction 0.459113588554326 Functional Loss - CCL22 ENSG00000102962 CDS Human protein_coding chr16:57394417 chr16:57394419 synonymous SNV . 0 23 hm5C_associated_SNPs_75330 0 0 0 0 2 CCL22 chr16:57394349 3'AG 57394349 Downstream 71bp
chr16 57394419 57394419 1 + C T rs371008561 57394417 + 57394397 57394437 41 TCCGTTACCGTCTGCCCCTGCGCGTGGTGAAACACTTCTAC TCCGTTACCGTCTGCCCCTGCGTGTGGTGAAACACTTCTAC < 41bp 0.729556794277163 0.459379117164363 0.3982808 0.53226 prediction 0.459113588554326 Functional Loss - CCL22 ENSG00000102962 CDS Human protein_coding chr16:57394417 chr16:57394419 synonymous SNV . 0 23 hm5C_associated_SNPs_75330 0 0 0 0 2 CCL22 chr16:57394472 5'GT 57394472 Upstream 54bp
chr16 57394420 57394420 1 + G A GBM 57394417 + 57394397 57394437 41 TCCGTTACCGTCTGCCCCTGCGCGTGGTGAAACACTTCTAC TCCGTTACCGTCTGCCCCTGCGCATGGTGAAACACTTCTAC < 41bp 0.729556794277163 0.478218631289676 0.3982808 0.20945612 prediction 0.459113588554326 Functional Loss - CCL22 ENSG00000102962 CDS Human protein_coding chr16:57394417 chr16:57394420 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_75331 0 0 0 0 2 CCL22 chr16:57394349 3'AG 57394349 Downstream 72bp
chr16 57394420 57394420 1 + G A GBM 57394417 + 57394397 57394437 41 TCCGTTACCGTCTGCCCCTGCGCGTGGTGAAACACTTCTAC TCCGTTACCGTCTGCCCCTGCGCATGGTGAAACACTTCTAC < 41bp 0.729556794277163 0.478218631289676 0.3982808 0.20945612 prediction 0.459113588554326 Functional Loss - CCL22 ENSG00000102962 CDS Human protein_coding chr16:57394417 chr16:57394420 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_75331 0 0 0 0 2 CCL22 chr16:57394472 5'GT 57394472 Upstream 53bp
chr1 154229710 154229710 1 + C T UCEC 154229708 + 154229688 154229728 41 CTCCACTGTCACAGCCTCGACTCGAAGCTCAGTTGCTACGA CTCCACTGTCACAGCCTCGACTTGAAGCTCAGTTGCTACGA < 41bp 0.844728465657334 0.61517167301744 0.9175476 0.18392444 prediction 0.459113585279789 Functional Loss - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154229708 chr1:154229710 stopgain 1.000 0 23 hm5C_associated_SNPs_75332 0 0 1 0 1 UBAP2L chr1:154229734 5'GT 154229734 Upstream 25bp
chr5 94749822 94749822 1 + C T LGG 94749820 + 94749800 94749840 41 GCTTTCGAAAAGAGGAATCGCTCGCCAGGAAGTTACTGGAA GCTTTCGAAAAGAGGAATCGCTTGCCAGGAAGTTACTGGAA < 41bp 0.729554485057792 0.490229541347876 0.029714584 0.016353637 prediction 0.459108970115583 Functional Loss - FAM81B ENSG00000153347 CDS Human protein_coding chr5:94749820 chr5:94749822 synonymous SNV . 0 23 hm5C_associated_SNPs_75334 0 0 0 0 1 FAM81B chr5:94749894 5'GT 94749894 Upstream 73bp
chr17 26646322 26646322 1 + C T BLCA 26646320 + 26646300 26646340 41 GGCTGCTGGGCCTCTACTTCCTCAGCCACATCCCCATCACC GGCTGCTGGGCCTCTACTTCCTTAGCCACATCCCCATCACC < 41bp 0.76665134080027 0.537098894781387 0.24870506 0.12373808 prediction 0.459104892037766 Functional Loss - TMEM97 ENSG00000109084 CDS Human protein_coding chr17:26646320 chr17:26646322 stopgain 0.864 0 23 hm5C_associated_SNPs_75335 0 0 1 0 1 TMEM97 chr17:26646391 5'GT 26646391 Upstream 70bp
chr1 897038 897038 1 + G A BRCA 897035 + 897015 897055 41 TGAGCGAGAGCCGCCAGACCCACGTGACGCTGCACGACATC TGAGCGAGAGCCGCCAGACCCACATGACGCTGCACGACATC < 41bp 0.729550421334337 0.486227286085333 0.36190385 0.10137707 prediction 0.459100842668675 Functional Loss - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:897035 chr1:897038 nonsynonymous SNV 0.952 4 24 hm5C_associated_SNPs_75337 0 0 0 0 1 KLHL17 chr1:897130 5'GT 897130 Upstream 93bp
chr7 98257722 98257722 1 + G A rs142543231 98257719 + 98257699 98257739 41 GTTCCCATTCCCCAGGACACCGTGGGGGGTAGGTTTGATGC GTTCCCATTCCCCAGGACACCGTAGGGGGTAGGTTTGATGC < 41bp 0.757194855904914 0.527645297370597 0.7412845 0.51120216 prediction 0.459099117068634 Functional Loss - NPTX2 ENSG00000106236 CDS Human protein_coding chr7:98257719 chr7:98257722 synonymous SNV . 0 24 hm5C_associated_SNPs_75338 0 0 0 0 1 NPTX2 chr7:98257714 3'AG 98257714 Downstream 9bp
chr18 21441709 21441709 1 + G T PRAD 21441706 + 21441686 21441726 41 ACAGTATGGTGGCGGATCTCCAGGAGCTGCCCGCAACCATC ACAGTATGGTGGCGGATCTCCAGTAGCTGCCCGCAACCATC < 41bp 0.729539731557848 0.371798361071287 0.9330699 0.24291205 prediction 0.459079463115696 Functional Loss - LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21441706 chr18:21441709 stopgain 0.992 0 24 hm5C_associated_SNPs_75341 0 0 0 0 2 LAMA3 chr18:21441610 3'AG 21441610 Downstream 100bp
chr18 21441709 21441709 1 + G T PRAD 21441706 + 21441686 21441726 41 ACAGTATGGTGGCGGATCTCCAGGAGCTGCCCGCAACCATC ACAGTATGGTGGCGGATCTCCAGTAGCTGCCCGCAACCATC < 41bp 0.729539731557848 0.371798361071287 0.9330699 0.24291205 prediction 0.459079463115696 Functional Loss - LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21441706 chr18:21441709 stopgain 0.992 0 24 hm5C_associated_SNPs_75341 0 0 0 0 2 LAMA3 chr18:21441771 5'GT 21441771 Upstream 63bp
chr1 54428058 54428058 1 + C T BLCA 54428055 + 54428035 54428075 41 AAGGAATTTGATCATAGTAACTGCAAGACAGAGGGCTGGGC AAGGAATTTGATCATAGTAACTGTAAGACAGAGGGCTGGGC < 41bp 0.72953669171413 0.499449196071472 0.3042822 0.27314073 prediction 0.459073383428259 Functional Loss - LRRC42 ENSG00000116212 CDS Human protein_coding chr1:54428055 chr1:54428058 synonymous SNV . 0 24 hm5C_associated_SNPs_75343 0 0 0 0 2 LRRC42 chr1:54427969 3'AG 54427969 Downstream 90bp
chr1 54428058 54428058 1 + C T BLCA 54428055 + 54428035 54428075 41 AAGGAATTTGATCATAGTAACTGCAAGACAGAGGGCTGGGC AAGGAATTTGATCATAGTAACTGTAAGACAGAGGGCTGGGC < 41bp 0.72953669171413 0.499449196071472 0.3042822 0.27314073 prediction 0.459073383428259 Functional Loss - LRRC42 ENSG00000116212 CDS Human protein_coding chr1:54428055 chr1:54428058 synonymous SNV . 0 24 hm5C_associated_SNPs_75343 0 0 0 0 2 LRRC42 chr1:54428082 5'GT 54428082 Upstream 25bp
chr19 57865133 57865133 1 + G T LUAD 57865130 + 57865110 57865150 41 GGATGTGTTCGTGTACTTCTCTCGGGAGGAGTGGGAACTCC GGATGTGTTCGTGTACTTCTCTCTGGAGGAGTGGGAACTCC < 41bp 0.928118377867744 0.698583342910747 0.23095688 0.2800197 prediction 0.459070069913995 Functional Loss - ZNF304 ENSG00000131845 CDS Human protein_coding chr19:57865130 chr19:57865133 nonsynonymous SNV 0.950 0 24 hm5C_associated_SNPs_75344 0 0 1 0 1 ZNF304 chr19:57865219 5'GT 57865219 Upstream 87bp
chr11 7509423 7509423 1 + A T STAD 7509419 + 7509399 7509439 41 TCAAGAATTCCAAGAGTTCTCAAAAAATATATCTGTCATGC TCAAGAATTCCAAGAGTTCTCAAATAATATATCTGTCATGC < 41bp 0.729528329516859 0.40496545436842 0.12987065 0.043099582 prediction 0.459056659033719 Functional Loss - OLFML1 ENSG00000183801 CDS Human protein_coding chr11:7509419 chr11:7509423 nonsynonymous SNV 0.992 1 25 hm5C_associated_SNPs_75350 0 0 0 0 1 OLFML1 chr11:7509358 3'AG 7509358 Downstream 66bp
chr11 117117545 117117545 1 + G T UCEC 117117543 + 117117523 117117563 41 AGGAGATATTAAAGGCTATTCAGGATGTGACAATAAAGCGG AGGAGATATTAAAGGCTATTCATGATGTGACAATAAAGCGG < 41bp 0.729527695062076 0.426587511631977 0.55137366 0.29804677 prediction 0.459055390124151 Functional Loss - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117117543 chr11:117117545 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_75351 0 0 1 0 1 RNF214 chr11:117117525 3'AG 117117525 Downstream 21bp
chr7 107557805 107557805 1 + T C UCEC 107557804 + 107557784 107557824 41 TATCTGTGTTGAAGGAATGGCTGGTGGTGCTGTGCACATTG TATCTGTGTTGAAGGAATGGCCGGTGGTGCTGTGCACATTG < 41bp 0.729527646662538 0.495618836411203 0.08741504 0.0913592 prediction 0.459055293325077 Functional Loss - DLD ENSG00000091140 CDS Human protein_coding chr7:107557804 chr7:107557805 synonymous SNV . 0 22 hm5C_associated_SNPs_75352 0 0 1 0 1 DLD chr7:107557718 3'AG 107557718 Downstream 88bp
chr22 33254032 33254032 1 + G A UCEC 33254029 + 33254009 33254049 41 GTCTATGATGGCAAGATGTACACGGGGCTGTGCAACTTCGT GTCTATGATGGCAAGATGTACACAGGGCTGTGCAACTTCGT < 41bp 0.7295202329871 0.489461219614274 0.15574682 0.03928733 prediction 0.4590404659742 Functional Loss - TIMP3 ENSG00000100234 CDS Human protein_coding chr22:33254029 chr22:33254032 synonymous SNV . 0 24 hm5C_associated_SNPs_75354 0 0 1 0 2 TIMP3 chr22:33254004 3'AG 33254004 Downstream 29bp
chr22 33254032 33254032 1 + G A UCEC 33254029 + 33254009 33254049 41 GTCTATGATGGCAAGATGTACACGGGGCTGTGCAACTTCGT GTCTATGATGGCAAGATGTACACAGGGCTGTGCAACTTCGT < 41bp 0.7295202329871 0.489461219614274 0.15574682 0.03928733 prediction 0.4590404659742 Functional Loss - TIMP3 ENSG00000100234 CDS Human protein_coding chr22:33254029 chr22:33254032 synonymous SNV . 0 24 hm5C_associated_SNPs_75354 0 0 1 0 2 TIMP3 chr22:33254125 5'GT 33254125 Upstream 94bp
chr22 33254031 33254031 1 + C T UCEC 33254029 + 33254009 33254049 41 GTCTATGATGGCAAGATGTACACGGGGCTGTGCAACTTCGT GTCTATGATGGCAAGATGTACATGGGGCTGTGCAACTTCGT < 41bp 0.7295202329871 0.453694541287425 0.15574682 0.14714244 prediction 0.4590404659742 Functional Loss - TIMP3 ENSG00000100234 CDS Human protein_coding chr22:33254029 chr22:33254031 nonsynonymous SNV 0.867 5 23 hm5C_associated_SNPs_75355 0 0 1 0 2 TIMP3 chr22:33254004 3'AG 33254004 Downstream 28bp
chr22 33254031 33254031 1 + C T UCEC 33254029 + 33254009 33254049 41 GTCTATGATGGCAAGATGTACACGGGGCTGTGCAACTTCGT GTCTATGATGGCAAGATGTACATGGGGCTGTGCAACTTCGT < 41bp 0.7295202329871 0.453694541287425 0.15574682 0.14714244 prediction 0.4590404659742 Functional Loss - TIMP3 ENSG00000100234 CDS Human protein_coding chr22:33254029 chr22:33254031 nonsynonymous SNV 0.867 5 23 hm5C_associated_SNPs_75355 0 0 1 0 2 TIMP3 chr22:33254125 5'GT 33254125 Upstream 95bp
chr11 20648268 20648268 1 + G A LUAD 20648265 + 20648245 20648285 41 CTTTTCTAGGTGGTGTACTTCACGGCCACGTTCCCGTATGT CTTTTCTAGGTGGTGTACTTCACAGCCACGTTCCCGTATGT < 41bp 0.784078844362238 0.554559071226001 0.3910177 0.14704704 prediction 0.459039546272474 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20648265 chr11:20648268 synonymous SNV . 0 24 hm5C_associated_SNPs_75356 0 0 0 0 1 SLC6A5 chr11:20648254 3'AG 20648254 Downstream 15bp
chr5 128983558 128983558 1 + G A SKCM 128983555 + 128983535 128983575 41 TTGTAGCCGAACCTGCAGTGCTGGGATCAGCAGTCGAGAGC TTGTAGCCGAACCTGCAGTGCTGAGATCAGCAGTCGAGAGC < 41bp 0.764725050829924 0.535207012650805 0.21766996 0.10363102 prediction 0.459036076358239 Functional Loss - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:128983555 chr5:128983558 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_75358 0 0 0 0 1 ADAMTS19 chr5:128983588 5'GT 128983588 Upstream 31bp
chr19 46206208 46206208 1 + G A STAD 46206205 + 46206185 46206225 41 TCCACGCCCTTCCCTGCTGTCTGGCACACCCCTGCGGACAC TCCACGCCCTTCCCTGCTGTCTGACACACCCCTGCGGACAC < 41bp 0.729517844406328 0.490960126860907 0.48853412 0.33291715 prediction 0.459035688812656 Functional Loss - QPCTL ENSG00000011478 CDS Human protein_coding chr19:46206205 chr19:46206208 stopgain 0.878 1 24 hm5C_associated_SNPs_75360 0 0 1 0 1 QPCTL chr19:46206162 3'AG 46206162 Downstream 47bp
chr9 139694931 139694931 1 + G A GBM 139694928 + 139694908 139694948 41 ACCTGCTGTATTTGGACCTGCTGGATTATCTGAAGACAGTG ACCTGCTGTATTTGGACCTGCTGAATTATCTGAAGACAGTG < 41bp 0.775552099274407 0.546036203162092 0.12858039 0.10000548 prediction 0.45903179222463 Functional Loss - CCDC183 ENSG00000213213;ENSG00000272896 CDS Human other chr9:139694928 chr9:139694931 nonsynonymous SNV 0.974 1 24 hm5C_associated_SNPs_75362 0 0 1 0 2 CCDC183 chr9:139694841 3'AG 139694841 Downstream 91bp
chr9 139694931 139694931 1 + G A GBM 139694928 + 139694908 139694948 41 ACCTGCTGTATTTGGACCTGCTGGATTATCTGAAGACAGTG ACCTGCTGTATTTGGACCTGCTGAATTATCTGAAGACAGTG < 41bp 0.775552099274407 0.546036203162092 0.12858039 0.10000548 prediction 0.45903179222463 Functional Loss - CCDC183 ENSG00000213213;ENSG00000272896 CDS Human other chr9:139694928 chr9:139694931 nonsynonymous SNV 0.974 1 24 hm5C_associated_SNPs_75362 0 0 1 0 2 CCDC183 chr9:139694945 5'GT 139694945 Upstream 15bp
chr19 58899511 58899511 1 + G C HNSC 58899510 + 58899490 58899530 41 TCACCCTGTCCCAGGATGACCGAGTGGGAGACAGCAGCACC TCACCCTGTCCCAGGATGACCCAGTGGGAGACAGCAGCACC < 41bp 0.729510322334642 0.411661122625887 0.34835345 0.35009933 prediction 0.459020644669284 Functional Loss - RPS5 ENSG00000083845 CDS Human protein_coding chr19:58899510 chr19:58899511 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_75365 0 0 1 0 1 RPS5 chr19:58899504 3'AG 58899504 Downstream 8bp
chr7 129093175 129093175 1 + C T SKCM 129093172 + 129093152 129093192 41 TCTCCACCTTCCTGGAGCTACTCCACATGGAAATTGAGTGA TCTCCACCTTCCTGGAGCTACTCTACATGGAAATTGAGTGA < 41bp 0.729508938209459 0.499439619185929 0.93568623 0.9039887 prediction 0.459017876418917 Functional Loss - STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129093172 chr7:129093175 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_75368 0 0 1 0 1 STRIP2 chr7:129093188 5'GT 129093188 Upstream 14bp
chr22 24106284 24106284 1 + G A rs538706829 24106281 + 24106261 24106301 41 CCCCTCTCCACAGCTGGCTGCTCGGTGCTGGTGAACACCTC CCCCTCTCCACAGCTGGCTGCTCAGTGCTGGTGAACACCTC < 41bp 0.729502852369115 0.490124791965963 0.35733467 0.23206711 prediction 0.459005704738231 Functional Loss - C22orf15 ENSG00000169314 CDS Human protein_coding chr22:24106281 chr22:24106284 synonymous SNV . 0 24 hm5C_associated_SNPs_75373 0 0 0 0 2 C22orf15 chr22:24106274 3'AG 24106274 Downstream 11bp
chr22 24106284 24106284 1 + G A rs538706829 24106281 + 24106261 24106301 41 CCCCTCTCCACAGCTGGCTGCTCGGTGCTGGTGAACACCTC CCCCTCTCCACAGCTGGCTGCTCAGTGCTGGTGAACACCTC < 41bp 0.729502852369115 0.490124791965963 0.35733467 0.23206711 prediction 0.459005704738231 Functional Loss - C22orf15 ENSG00000169314 CDS Human protein_coding chr22:24106281 chr22:24106284 synonymous SNV . 0 24 hm5C_associated_SNPs_75373 0 0 0 0 2 C22orf15 chr22:24106360 5'GT 24106360 Upstream 77bp
chr17 80436695 80436695 1 + G A rs149086254 80436692 + 80436672 80436712 41 CCAGGCTGGGTCCGATACGCCGAGCGGGTGCTGGGTCGCCC CCAGGCTGGGTCCGATACGCCGAACGGGTGCTGGGTCGCCC < 41bp 0.784435649890976 0.554933446897317 0.7760729 0.2465398 prediction 0.459004405987317 Functional Loss - NARF ENSG00000141562 CDS Human protein_coding chr17:80436692 chr17:80436695 synonymous SNV . 0 24 hm5C_associated_SNPs_75374 0 0 1 0 2 NARF chr17:80436676 3'AG 80436676 Downstream 20bp
chr17 80436695 80436695 1 + G A rs149086254 80436692 + 80436672 80436712 41 CCAGGCTGGGTCCGATACGCCGAGCGGGTGCTGGGTCGCCC CCAGGCTGGGTCCGATACGCCGAACGGGTGCTGGGTCGCCC < 41bp 0.784435649890976 0.554933446897317 0.7760729 0.2465398 prediction 0.459004405987317 Functional Loss - NARF ENSG00000141562 CDS Human protein_coding chr17:80436692 chr17:80436695 synonymous SNV . 0 24 hm5C_associated_SNPs_75374 0 0 1 0 2 NARF chr17:80436794 5'GT 80436794 Upstream 100bp
chr10 89472847 89472847 1 + G A SKCM 89472844 + 89472824 89472864 41 CTGAACAGGTCTCTCTGGTGCTGGAAAAACAACGATAAGTT CTGAACAGGTCTCTCTGGTGCTGAAAAAACAACGATAAGTT < 41bp 0.74026041355161 0.510759994322039 0.26503152 0.13363555 prediction 0.459000838459143 Functional Loss - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89472844 chr10:89472847 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_75375 0 0 0 0 1 PAPSS2 chr10:89472832 3'AG 89472832 Downstream 16bp
chr1 162535885 162535885 1 + G A BLCA 162535882 + 162535862 162535902 41 AACATTAATGACCTCAAACTCACGTTGTCCAAAGCTGGGCA AACATTAATGACCTCAAACTCACATTGTCCAAAGCTGGGCA < 41bp 0.746829264306425 0.517341836613557 0.092225194 0.016599178 prediction 0.458974855385735 Functional Loss - UAP1 ENSG00000117143 CDS Human protein_coding chr1:162535882 chr1:162535885 synonymous SNV . 0 24 hm5C_associated_SNPs_75382 0 0 1 0 1 UAP1 chr1:162535802 3'AG 162535802 Downstream 84bp
chr7 130023634 130023634 1 + C T rs114488732 130023632 + 130023612 130023652 41 GGCTTTGCCTTCACGCACAGCACGGTACCGGCCTTCTCCTG GGCTTTGCCTTCACGCACAGCATGGTACCGGCCTTCTCCTG < 41bp 0.778163128306424 0.548676318833251 0.32198405 0.20365 prediction 0.458973618946347 Functional Loss - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130023632 chr7:130023634 nonsynonymous SNV 0.077 0 23 hm5C_associated_SNPs_75383 0 0 0 0 1 CPA1 chr7:130023635 5'GT 130023635 Upstream 2bp
chr17 12028638 12028638 1 + C T ESCA 12028636 + 12028616 12028656 41 AAGAATAGACCCAAGCGCATCACGACAAGGATATGATGTCC AAGAATAGACCCAAGCGCATCATGACAAGGATATGATGTCC < 41bp 0.729486731416652 0.433515809031532 0.01791498 0.03089407 prediction 0.458973462833304 Functional Loss - MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12028636 chr17:12028638 stopgain 0.995 1 23 hm5C_associated_SNPs_75384 0 0 1 0 2 MAP2K4 chr17:12028611 3'AG 12028611 Downstream 28bp
chr17 12028638 12028638 1 + C T ESCA 12028636 + 12028616 12028656 41 AAGAATAGACCCAAGCGCATCACGACAAGGATATGATGTCC AAGAATAGACCCAAGCGCATCATGACAAGGATATGATGTCC < 41bp 0.729486731416652 0.433515809031532 0.01791498 0.03089407 prediction 0.458973462833304 Functional Loss - MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12028636 chr17:12028638 stopgain 0.995 1 23 hm5C_associated_SNPs_75384 0 0 1 0 2 MAP2K4 chr17:12028688 5'GT 12028688 Upstream 51bp
chr17 12028639 12028639 1 + G A UCEC 12028636 + 12028616 12028656 41 AAGAATAGACCCAAGCGCATCACGACAAGGATATGATGTCC AAGAATAGACCCAAGCGCATCACAACAAGGATATGATGTCC < 41bp 0.729486731416652 0.497120141581165 0.01791498 0.032816052 prediction 0.458973462833304 Functional Loss - MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12028636 chr17:12028639 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_75385 0 0 1 0 2 MAP2K4 chr17:12028611 3'AG 12028611 Downstream 29bp
chr17 12028639 12028639 1 + G A UCEC 12028636 + 12028616 12028656 41 AAGAATAGACCCAAGCGCATCACGACAAGGATATGATGTCC AAGAATAGACCCAAGCGCATCACAACAAGGATATGATGTCC < 41bp 0.729486731416652 0.497120141581165 0.01791498 0.032816052 prediction 0.458973462833304 Functional Loss - MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12028636 chr17:12028639 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_75385 0 0 1 0 2 MAP2K4 chr17:12028688 5'GT 12028688 Upstream 50bp
chr11 66190325 66190325 1 + G A GBM 66190322 + 66190302 66190342 41 GCCGAGACCCCGCCCAGGTCCTGGCCCTGGCCCTGGCCCTG GCCGAGACCCCGCCCAGGTCCTGACCCTGGCCCTGGCCCTG < 41bp 0.729481876258789 0.467435237719191 0.23843238 0.17207766 prediction 0.458963752517577 Functional Loss - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66190322 chr11:66190325 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_75388 0 0 0 0 1 NPAS4 chr11:66190412 5'GT 66190412 Upstream 88bp
chr14 38170629 38170629 1 + G A UCEC 38170626 + 38170606 38170646 41 TGTTGACTTGCGCCTGGCTTCTCGAGTGTATCACACTGCTA TGTTGACTTGCGCCTGGCTTCTCAAGTGTATCACACTGCTA < 41bp 0.73328280633625 0.503805726420887 0.8825789 0.6444057 prediction 0.458954159830726 Functional Loss - TTC6 ENSG00000139865 CDS Human protein_coding chr14:38170626 chr14:38170629 nonsynonymous SNV 0.990 2 24 hm5C_associated_SNPs_75390 0 0 1 1 1 TTC6 chr14:38170537 3'AG 38170537 Downstream 93bp
chr12 7050052 7050052 1 + C T UCEC 7050050 + 7050030 7050070 41 CTCTGCCCTCCAGCCTCTGCCTCGGTGCACCCTCTCATTGA CTCTGCCCTCCAGCCTCTGCCTTGGTGCACCCTCTCATTGA < 41bp 0.72947644385376 0.448572513035 0.17410746 0.07345322 prediction 0.45895288770752 Functional Loss - ATN1 ENSG00000111676 CDS Human protein_coding chr12:7050050 chr12:7050052 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_75391 0 0 1 0 1 ATN1 chr12:7050043 3'AG 7050043 Downstream 10bp
chr8 19694617 19694617 1 + G T UCEC 19694614 + 19694594 19694634 41 GCTACATGGTACTCCCCATTCAAGATGGAGGCAAATCCCAG GCTACATGGTACTCCCCATTCAATATGGAGGCAAATCCCAG < 41bp 0.921434458796736 0.69196047389223 0.2845692 0.11338267 prediction 0.458947969809011 Functional Loss - INTS10 ENSG00000104613 CDS Human protein_coding chr8:19694614 chr8:19694617 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_75393 0 0 1 0 2 INTS10 chr8:19694563 3'AG 19694563 Downstream 55bp
chr8 19694617 19694617 1 + G T UCEC 19694614 + 19694594 19694634 41 GCTACATGGTACTCCCCATTCAAGATGGAGGCAAATCCCAG GCTACATGGTACTCCCCATTCAATATGGAGGCAAATCCCAG < 41bp 0.921434458796736 0.69196047389223 0.2845692 0.11338267 prediction 0.458947969809011 Functional Loss - INTS10 ENSG00000104613 CDS Human protein_coding chr8:19694614 chr8:19694617 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_75393 0 0 1 0 2 INTS10 chr8:19694671 5'GT 19694671 Upstream 55bp
chr1 180904337 180904337 1 + C T SKCM 180904335 + 180904315 180904355 41 AACGGGCACACGAGCGATTCCTCCAGCGGAGAGTCCAGCGG AACGGGCACACGAGCGATTCCTTCAGCGGAGAGTCCAGCGG < 41bp 0.838357757849475 0.608889610543842 0.9474756 0.281629 prediction 0.458936294611265 Functional Loss - KIAA1614 ENSG00000135835 CDS Human protein_coding chr1:180904335 chr1:180904337 nonsynonymous SNV 0.971 4 23 hm5C_associated_SNPs_75394 0 0 0 0 1 KIAA1614 chr1:180904251 3'AG 180904251 Downstream 87bp
chr1 234367213 234367213 1 + G A SKCM 234367210 + 234367190 234367230 41 GCCCGGCGGAGGCCCAGGCACCGGCCGGGGTGGAGGCCGGC GCCCGGCGGAGGCCCAGGCACCGACCGGGGTGGAGGCCGGC < 41bp 0.760571084526896 0.531109205253815 0.83493495 0.6131441 prediction 0.458923758546162 Functional Loss - SLC35F3 ENSG00000183780 CDS Human protein_coding chr1:234367210 chr1:234367213 nonsynonymous SNV 0.180 1 24 hm5C_associated_SNPs_75399 0 0 0 0 1 SLC35F3 chr1:234367163 3'AG 234367163 Downstream 51bp
chr2 63832498 63832498 1 + G A STAD 63832495 + 63832475 63832515 41 CTGCAAAAGCCATCTGTGACCACGTCAGGGACATCTGGTTT CTGCAAAAGCCATCTGTGACCACATCAGGGACATCTGGTTT < 41bp 0.731360456734886 0.50190212865348 0.21968085 0.42593694 prediction 0.458916656162811 Functional Loss - MDH1 ENSG00000014641 CDS Human protein_coding chr2:63832495 chr2:63832498 nonsynonymous SNV 0.890 0 24 hm5C_associated_SNPs_75401 0 0 1 0 2 MDH1 chr2:63832414 3'AG 63832414 Downstream 85bp
chr2 63832498 63832498 1 + G A STAD 63832495 + 63832475 63832515 41 CTGCAAAAGCCATCTGTGACCACGTCAGGGACATCTGGTTT CTGCAAAAGCCATCTGTGACCACATCAGGGACATCTGGTTT < 41bp 0.731360456734886 0.50190212865348 0.21968085 0.42593694 prediction 0.458916656162811 Functional Loss - MDH1 ENSG00000014641 CDS Human protein_coding chr2:63832495 chr2:63832498 nonsynonymous SNV 0.890 0 24 hm5C_associated_SNPs_75401 0 0 1 0 2 MDH1 chr2:63832527 5'GT 63832527 Upstream 30bp
chr9 101747861 101747861 1 + G A SKCM 101747858 + 101747838 101747878 41 TCCCTGCAGAGACTGCTTCCCAGGGTCACCTGGACCTCACG TCCCTGCAGAGACTGCTTCCCAGAGTCACCTGGACCTCACG < 41bp 0.761776111918419 0.53232057633371 0.94426185 0.92231905 prediction 0.458911071169418 Functional Loss - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101747858 chr9:101747861 nonsynonymous SNV 0.293 1 24 hm5C_associated_SNPs_75403 0 0 0 0 1 COL15A1 chr9:101747847 3'AG 101747847 Downstream 15bp
chr10 102824068 102824068 1 + G A SKCM 102824065 + 102824045 102824085 41 ACACTTGGAATGTGACAGGGCAGGATGTGATCTTTGGCTGT ACACTTGGAATGTGACAGGGCAGAATGTGATCTTTGGCTGT < 41bp 0.763756324438606 0.534304131436713 0.18669933 0.053183883 prediction 0.458904386003786 Functional Loss - KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824065 chr10:102824068 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_75406 0 0 0 0 1 KAZALD1 chr10:102824018 3'AG 102824018 Downstream 51bp
chr20 33567524 33567524 1 + G A SKCM 33567521 + 33567501 33567541 41 ACCCGCCTCGCTTCGACTTACTGGAGGACATGGCCATGATG ACCCGCCTCGCTTCGACTTACTGAAGGACATGGCCATGATG < 41bp 0.76813607057806 0.538684064899264 0.37106588 0.16152054 prediction 0.458904011357593 Functional Loss - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33567521 chr20:33567524 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_75407 0 0 0 0 2 MYH7B chr20:33567464 3'AG 33567464 Downstream 61bp
chr20 33567524 33567524 1 + G A SKCM 33567521 + 33567501 33567541 41 ACCCGCCTCGCTTCGACTTACTGGAGGACATGGCCATGATG ACCCGCCTCGCTTCGACTTACTGAAGGACATGGCCATGATG < 41bp 0.76813607057806 0.538684064899264 0.37106588 0.16152054 prediction 0.458904011357593 Functional Loss - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33567521 chr20:33567524 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_75407 0 0 0 0 2 MYH7B chr20:33567607 5'GT 33567607 Upstream 84bp
chr10 75673453 75673453 1 + C T SKCM 75673451 + 75673431 75673471 41 AGGCACCGGGGGGGCTCTGTCACCTACGTGTGTGGAGGCAG AGGCACCGGGGGGGCTCTGTCATCTACGTGTGTGGAGGCAG < 41bp 0.83305430596861 0.603603771215579 0.40101847 0.44288337 prediction 0.458901069506062 Functional Loss - PLAU ENSG00000122861 CDS Human protein_coding chr10:75673451 chr10:75673453 nonsynonymous SNV 0.044 1 23 hm5C_associated_SNPs_75408 0 0 0 1 1 PLAU chr10:75673516 5'GT 75673516 Upstream 64bp
chrX 106034405 106034405 1 + G T LUAD 106034402 + 106034382 106034422 41 TCGCAGCGAGACCGCATCATCTGGATATGCTTCAGTACAGG TCGCAGCGAGACCGCATCATCTGTATATGCTTCAGTACAGG < 41bp 0.922792169300105 0.693342017973712 0.42237628 0.100889325 prediction 0.458900302652785 Functional Loss - RNF128 ENSG00000133135 CDS Human protein_coding chrX:106034402 chrX:106034405 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_75409 0 0 1 0 1 RNF128 chrX:106034464 5'GT 106034464 Upstream 60bp
chr2 175263070 175263070 1 + G T UCEC 175263068 + 175263048 175263088 41 CCTCCAGCAACAGTCGATAACAGGATTATTTTTGGAAAAAA CCTCCAGCAACAGTCGATAACATGATTATTTTTGGAAAAAA < 41bp 0.885731624240113 0.656287573169727 0.9311163 0.230254 prediction 0.458888102140772 Functional Loss - SCRN3 ENSG00000144306 CDS Human protein_coding chr2:175263068 chr2:175263070 nonsynonymous SNV 0.993 3 23 hm5C_associated_SNPs_75411 0 0 1 0 1 SCRN3 chr2:175263003 3'AG 175263003 Downstream 68bp
chr10 124268215 124268215 1 + G T COAD 124268212 + 124268192 124268232 41 TAACACTTTGAAAGTGACAGCTGGAATCTCCTTTGCAATCC TAACACTTTGAAAGTGACAGCTGTAATCTCCTTTGCAATCC < 41bp 0.729443064164897 0.337875081835736 0.16415462 0.09207058 prediction 0.458886128329795 Functional Loss - HTRA1 ENSG00000166033 CDS Human protein_coding chr10:124268212 chr10:124268215 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_75412 0 0 1 0 2 HTRA1 chr10:124268172 3'AG 124268172 Downstream 44bp
chr10 124268215 124268215 1 + G T COAD 124268212 + 124268192 124268232 41 TAACACTTTGAAAGTGACAGCTGGAATCTCCTTTGCAATCC TAACACTTTGAAAGTGACAGCTGTAATCTCCTTTGCAATCC < 41bp 0.729443064164897 0.337875081835736 0.16415462 0.09207058 prediction 0.458886128329795 Functional Loss - HTRA1 ENSG00000166033 CDS Human protein_coding chr10:124268212 chr10:124268215 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_75412 0 0 1 0 2 HTRA1 chr10:124268286 5'GT 124268286 Upstream 72bp
chr1 114214377 114214377 1 + G A OV 114214374 + 114214354 114214394 41 AGAGCATCATGGTCCACCATCAGGAACAAACTCAGCCAGGC AGAGCATCATGGTCCACCATCAGAAACAAACTCAGCCAGGC < 41bp 0.741452912167198 0.512011929679347 0.8762709 0.52660143 prediction 0.458881964975701 Functional Loss - MAGI3 ENSG00000081026 CDS Human protein_coding chr1:114214374 chr1:114214377 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_75413 0 0 0 0 2 MAGI3 chr1:114214356 3'AG 114214356 Downstream 22bp
chr1 114214377 114214377 1 + G A OV 114214374 + 114214354 114214394 41 AGAGCATCATGGTCCACCATCAGGAACAAACTCAGCCAGGC AGAGCATCATGGTCCACCATCAGAAACAAACTCAGCCAGGC < 41bp 0.741452912167198 0.512011929679347 0.8762709 0.52660143 prediction 0.458881964975701 Functional Loss - MAGI3 ENSG00000081026 CDS Human protein_coding chr1:114214374 chr1:114214377 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_75413 0 0 0 0 2 MAGI3 chr1:114214458 5'GT 114214458 Upstream 82bp
chr2 192194747 192194747 1 + G A BLCA 192194744 + 192194724 192194764 41 CATTACTGGGGAAAGTGGAGCAGGAAAAACAGGTAAGGCTC CATTACTGGGGAAAGTGGAGCAGAAAAAACAGGTAAGGCTC < 41bp 0.739471872227315 0.510033642838894 0.9158665 0.8484682 prediction 0.458876458776841 Functional Loss - MYO1B ENSG00000128641 CDS Human protein_coding chr2:192194744 chr2:192194747 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_75415 0 0 1 0 2 MYO1B chr2:192194661 3'AG 192194661 Downstream 87bp
chr2 192194747 192194747 1 + G A BLCA 192194744 + 192194724 192194764 41 CATTACTGGGGAAAGTGGAGCAGGAAAAACAGGTAAGGCTC CATTACTGGGGAAAGTGGAGCAGAAAAAACAGGTAAGGCTC < 41bp 0.739471872227315 0.510033642838894 0.9158665 0.8484682 prediction 0.458876458776841 Functional Loss - MYO1B ENSG00000128641 CDS Human protein_coding chr2:192194744 chr2:192194747 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_75415 0 0 1 0 2 MYO1B chr2:192194755 5'GT 192194755 Upstream 9bp
chr13 113536261 113536261 1 + G A rs115526941 113536258 + 113536238 113536278 41 CACTCTCAGCAGGTGACACTCGCGGCCTGGAAGGAGAAGGT CACTCTCAGCAGGTGACACTCGCAGCCTGGAAGGAGAAGGT < 41bp 0.74643772037969 0.517005118227103 0.8926505 0.23802915 prediction 0.458865204305173 Functional Loss - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113536258 chr13:113536261 synonymous SNV . 0 24 hm5C_associated_SNPs_75416 0 0 1 0 1 ATP11A chr13:113536190 3'AG 113536190 Downstream 72bp
chr1 16378000 16378000 1 + A C rs6650119 16377996 + 16377976 16378016 41 TGGATGCTGATTCTGGCCACCACCATCCCCATGCCTGCCGG TGGATGCTGATTCTGGCCACCACCCTCCCCATGCCTGCCGG < 41bp 0.72943246444833 0.297397350381793 0.091561645 0.09035757 prediction 0.45886492889666 Functional Loss - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16377996 chr1:16378000 nonsynonymous SNV 0.239 1 25 hm5C_associated_SNPs_75417 0 0 0 0 2 CLCNKB chr1:16377973 3'AG 16377973 Downstream 28bp
chr1 16378000 16378000 1 + A C rs6650119 16377996 + 16377976 16378016 41 TGGATGCTGATTCTGGCCACCACCATCCCCATGCCTGCCGG TGGATGCTGATTCTGGCCACCACCCTCCCCATGCCTGCCGG < 41bp 0.72943246444833 0.297397350381793 0.091561645 0.09035757 prediction 0.45886492889666 Functional Loss - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16377996 chr1:16378000 nonsynonymous SNV 0.239 1 25 hm5C_associated_SNPs_75417 0 0 0 0 2 CLCNKB chr1:16378042 5'GT 16378042 Upstream 43bp
chr1 20230884 20230884 1 + G A UCEC 20230881 + 20230861 20230901 41 CCAGAAAGTTTGTAATGCAACTGGATGTTCAGTTAGTATTT CCAGAAAGTTTGTAATGCAACTGAATGTTCAGTTAGTATTT < 41bp 0.751785047926181 0.52235408848499 0.1756095 0.12631837 prediction 0.458861918882382 Functional Loss - OTUD3 ENSG00000169914 CDS Human protein_coding chr1:20230881 chr1:20230884 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_75418 0 0 1 0 1 OTUD3 chr1:20230891 5'GT 20230891 Upstream 8bp
chr17 45361894 45361894 1 + C T SKCM 45361891 + 45361871 45361911 41 TACTTGATGGACCTGTCTTACTCCATGAAGGATGATCTGTG TACTTGATGGACCTGTCTTACTCTATGAAGGATGATCTGTG < 41bp 0.756823808455472 0.527396230462065 0.96888006 0.94384855 prediction 0.458855155986815 Functional Loss - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45361891 chr17:45361894 synonymous SNV . 0 24 hm5C_associated_SNPs_75420 0 0 0 0 1 ITGB3 chr17:45361809 3'AG 45361809 Downstream 86bp
chr13 21295850 21295850 1 + G C rs143890293 21295846 + 21295826 21295866 41 CCTGTGCCGGGGCTGCCTGACCGGGCTGTTCGGCGAGGAGG CCTGTGCCGGGGCTGCCTGACCGGCCTGTTCGGCGAGGAGG < 41bp 0.849101861846146 0.619682098538604 0.8151391 0.21029255 prediction 0.458839526615085 Functional Loss - IL17D ENSG00000172458 CDS Human protein_coding chr13:21295846 chr13:21295850 synonymous SNV . 0 25 hm5C_associated_SNPs_75424 0 0 0 0 1 IL17D chr13:21295775 3'AG 21295775 Downstream 76bp
chr20 58348458 58348458 1 + C T rs144199420 58348456 + 58348436 58348476 41 ACCGGCCTCTTCCCCCAAGCCGCGTCATTGAGGAGCTGCAC ACCGGCCTCTTCCCCCAAGCCGTGTCATTGAGGAGCTGCAC < 41bp 0.729415991870813 0.459794413678265 0.28459346 0.22922641 prediction 0.458831983741627 Functional Loss - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58348456 chr20:58348458 synonymous SNV . 0 23 hm5C_associated_SNPs_75425 0 0 0 0 1 PHACTR3 chr20:58348508 5'GT 58348508 Upstream 51bp
chr10 29580841 29580841 1 + A C COAD 29580840 + 29580820 29580860 41 CCTCATTGGCTGCCTGGTCACAGGCGCCGAGTCCAAAATCT CCTCATTGGCTGCCTGGTCACCGGCGCCGAGTCCAAAATCT < 41bp 0.729415945957098 0.464900921981435 0.83958894 0.36192405 prediction 0.458831891914196 Functional Loss - LYZL1 ENSG00000120563 CDS Human protein_coding chr10:29580840 chr10:29580841 synonymous SNV . 0 22 hm5C_associated_SNPs_75426 0 0 0 0 2 LYZL1 chr10:29580772 3'AG 29580772 Downstream 70bp
chr10 29580841 29580841 1 + A C COAD 29580840 + 29580820 29580860 41 CCTCATTGGCTGCCTGGTCACAGGCGCCGAGTCCAAAATCT CCTCATTGGCTGCCTGGTCACCGGCGCCGAGTCCAAAATCT < 41bp 0.729415945957098 0.464900921981435 0.83958894 0.36192405 prediction 0.458831891914196 Functional Loss - LYZL1 ENSG00000120563 CDS Human protein_coding chr10:29580840 chr10:29580841 synonymous SNV . 0 22 hm5C_associated_SNPs_75426 0 0 0 0 2 LYZL1 chr10:29580935 5'GT 29580935 Upstream 95bp
chr7 64530112 64530112 1 + G T STAD 64530110 + 64530090 64530130 41 TCCTGACTGCTTGGGACATGCAGGACTTGTATATGAGTATA TCCTGACTGCTTGGGACATGCATGACTTGTATATGAGTATA < 41bp 0.892344351690524 0.662931493762911 0.53137904 0.119674414 prediction 0.458825715855224 Functional Loss - CCT6P3 ENSG00000234585 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64530110 chr7:64530112 . . 0 23 hm5C_associated_SNPs_75427 0 0 0 2 2 CCT6P3 chr7:64530039 3'AG 64530039 Downstream 74bp
chr7 64530112 64530112 1 + G T STAD 64530110 + 64530090 64530130 41 TCCTGACTGCTTGGGACATGCAGGACTTGTATATGAGTATA TCCTGACTGCTTGGGACATGCATGACTTGTATATGAGTATA < 41bp 0.892344351690524 0.662931493762911 0.53137904 0.119674414 prediction 0.458825715855224 Functional Loss - CCT6P3 ENSG00000234585 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64530110 chr7:64530112 . . 0 23 hm5C_associated_SNPs_75427 0 0 0 2 2 CCT6P3 chr7:64530135 5'GT 64530135 Upstream 24bp
chr12 124798824 124798824 1 + G T CESC 124798822 + 124798802 124798842 41 GTACCCACCGTCACGGCCTACAGCGAGACCATCGTGGCAGC GTACCCACCGTCACGGCCTACATCGAGACCATCGTGGCAGC < 41bp 0.729404233773084 0.372908358231466 0.1465683 0.061403513 prediction 0.458808467546167 Functional Loss - RFLNA ENSG00000178882 CDS Human protein_coding chr12:124798822 chr12:124798824 nonsynonymous SNV 0.810 4 23 hm5C_associated_SNPs_75433 0 0 0 0 1 RFLNA chr12:124798738 3'AG 124798738 Downstream 87bp
chr10 82330038 82330038 1 + C T rs145622744 82330036 + 82330016 82330056 41 GGAGCTGATTGCAGAGAGGGCGCGGCTGCAGGCACAGAGGG GGAGCTGATTGCAGAGAGGGCGTGGCTGCAGGCACAGAGGG < 41bp 0.805629400298916 0.576227967548858 0.85273576 0.7812004 prediction 0.458802865500115 Functional Loss - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82330036 chr10:82330038 nonsynonymous SNV 0.974 4 23 hm5C_associated_SNPs_75435 0 0 0 0 1 SH2D4B chr10:82330072 5'GT 82330072 Upstream 35bp
chr1 154543683 154543683 1 + G A LGG 154543680 + 154543660 154543700 41 GGCAGTGCTGACGGCATGTACGAGGTGTCCTTCTATTCCAA GGCAGTGCTGACGGCATGTACGAAGTGTCCTTCTATTCCAA < 41bp 0.772612530513937 0.543211245144702 0.7617669 0.1655966 prediction 0.45880257073847 Functional Loss - CHRNB2 ENSG00000160716 CDS Human protein_coding chr1:154543680 chr1:154543683 synonymous SNV . 0 24 hm5C_associated_SNPs_75436 0 0 0 0 1 CHRNB2 chr1:154543665 3'AG 154543665 Downstream 19bp
chr5 179146718 179146718 1 + G A rs140056120 179146715 + 179146695 179146735 41 CAGATGAAGAGGCCACAAAACCCGAAGGCTGGTTAGATGAT CAGATGAAGAGGCCACAAAACCCAAAGGCTGGTTAGATGAT < 41bp 0.730050039924769 0.500650692813611 0.39331833 0.2322925 prediction 0.458798694222315 Functional Loss - CANX ENSG00000127022 CDS Human protein_coding chr5:179146715 chr5:179146718 nonsynonymous SNV 0.938 2 24 hm5C_associated_SNPs_75437 0 0 1 0 2 CANX chr5:179146669 3'AG 179146669 Downstream 50bp
chr5 179146718 179146718 1 + G A rs140056120 179146715 + 179146695 179146735 41 CAGATGAAGAGGCCACAAAACCCGAAGGCTGGTTAGATGAT CAGATGAAGAGGCCACAAAACCCAAAGGCTGGTTAGATGAT < 41bp 0.730050039924769 0.500650692813611 0.39331833 0.2322925 prediction 0.458798694222315 Functional Loss - CANX ENSG00000127022 CDS Human protein_coding chr5:179146715 chr5:179146718 nonsynonymous SNV 0.938 2 24 hm5C_associated_SNPs_75437 0 0 1 0 2 CANX chr5:179146782 5'GT 179146782 Upstream 65bp
chr6 170700107 170700107 1 + C T rs61733633 170700105 + 170700085 170700125 41 TCTGGTCTGTTTGCAGAGATCTCGGCTCACCAAATTCCACA TCTGGTCTGTTTGCAGAGATCTTGGCTCACCAAATTCCACA < 41bp 0.824985885882055 0.595589443502382 0.05355251 0.0288513 prediction 0.458792884759346 Functional Loss - FAM120B ENSG00000112584 CDS Human protein_coding chr6:170700105 chr6:170700107 nonsynonymous SNV 0.986 0 23 hm5C_associated_SNPs_75438 0 0 1 0 1 FAM120B chr6:170700101 3'AG 170700101 Downstream 7bp
chr19 10201949 10201949 1 + G A CESC 10201946 + 10201926 10201966 41 GTATCCCGGTGCCGGAAATGCCGGAAGCGCTACGAGCCAGT GTATCCCGGTGCCGGAAATGCCGAAAGCGCTACGAGCCAGT < 41bp 0.782949773921062 0.553553662455646 0.9103745 0.7652123 prediction 0.458792222930831 Functional Loss - C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10201946 chr19:10201949 nonsynonymous SNV 0.984 0 24 hm5C_associated_SNPs_75439 0 0 1 0 2 C19orf66 chr19:10201926 3'AG 10201926 Downstream 24bp
chr19 10201949 10201949 1 + G A CESC 10201946 + 10201926 10201966 41 GTATCCCGGTGCCGGAAATGCCGGAAGCGCTACGAGCCAGT GTATCCCGGTGCCGGAAATGCCGAAAGCGCTACGAGCCAGT < 41bp 0.782949773921062 0.553553662455646 0.9103745 0.7652123 prediction 0.458792222930831 Functional Loss - C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10201946 chr19:10201949 nonsynonymous SNV 0.984 0 24 hm5C_associated_SNPs_75439 0 0 1 0 2 C19orf66 chr19:10202029 5'GT 10202029 Upstream 81bp
chr6 109663729 109663729 1 + G A rs548467427 109663726 + 109663706 109663746 41 CAGGGCACAGGCTGACAGCGCGAGGATGTGGAAGCAGCAGG CAGGGCACAGGCTGACAGCGCGAAGATGTGGAAGCAGCAGG < 41bp 0.730402451093574 0.501006378252795 0.5379246 0.26826936 prediction 0.458792145681558 Functional Loss - CCDC162P;CD164 ENSG00000203799 ncRNA_exonic Human transcribed_unitary_pseudogene chr6:109663726 chr6:109663729 . . 0 24 hm5C_associated_SNPs_75440 0 0 0 0 1 CCDC162P;CD164 chr6:109663754 5'GT 109663754 Upstream 26bp
chr8 57358447 57358447 1 - C T ESCA 57358450 - 57358430 57358470 41 GGCCCCGGGCTCCTGGCGACCGTGCGGGCCGAATGCAGCCA GGCCCCGGGCTCCTGGCGACCGTACGGGCCGAATGCAGCCA < 41bp 0.729395567223517 0.480831224592016 0.3999954 0.27374595 prediction 0.458791134447035 Functional Loss - PENK ENSG00000181195 CDS Human protein_coding chr8:57358450 chr8:57358447 synonymous SNV . 0 24 hm5C_associated_SNPs_75442 0 0 0 0 2 PENK chr8:57358375 5'GT 57358375 Upstream 73bp
chr8 57358447 57358447 1 - C T ESCA 57358450 - 57358430 57358470 41 GGCCCCGGGCTCCTGGCGACCGTGCGGGCCGAATGCAGCCA GGCCCCGGGCTCCTGGCGACCGTACGGGCCGAATGCAGCCA < 41bp 0.729395567223517 0.480831224592016 0.3999954 0.27374595 prediction 0.458791134447035 Functional Loss - PENK ENSG00000181195 CDS Human antisense chr8:57358450 chr8:57358447 synonymous SNV . 0 24 hm5C_associated_SNPs_75442 0 0 0 0 2 LOC101929415 chr8:57358515 3'AG 57358515 Downstream 69bp
chr15 90274700 90274700 1 + G T SARC 90274698 + 90274678 90274718 41 CGAGGGTGTGTGGCCCTGTGCTGCGCCCATTGCAGTCTCTC CGAGGGTGTGTGGCCCTGTGCTTCGCCCATTGCAGTCTCTC < 41bp 0.729389969198057 0.366930866906289 0.2105627 0.13119191 prediction 0.458779938396114 Functional Loss - WDR93 ENSG00000140527 CDS Human protein_coding chr15:90274698 chr15:90274700 nonsynonymous SNV 0.954 1 23 hm5C_associated_SNPs_75446 0 0 0 0 2 WDR93 chr15:90274674 3'AG 90274674 Downstream 27bp
chr15 90274700 90274700 1 + G T SARC 90274698 + 90274678 90274718 41 CGAGGGTGTGTGGCCCTGTGCTGCGCCCATTGCAGTCTCTC CGAGGGTGTGTGGCCCTGTGCTTCGCCCATTGCAGTCTCTC < 41bp 0.729389969198057 0.366930866906289 0.2105627 0.13119191 prediction 0.458779938396114 Functional Loss - WDR93 ENSG00000140527 CDS Human protein_coding chr15:90274698 chr15:90274700 nonsynonymous SNV 0.954 1 23 hm5C_associated_SNPs_75446 0 0 0 0 2 WDR93 chr15:90274793 5'GT 90274793 Upstream 94bp
chr22 41622690 41622690 1 + G T SKCM 41622688 + 41622668 41622708 41 TATGAGGCACAGACTTTCAACTGGGAGAACTACTTGGAGAA TATGAGGCACAGACTTTCAACTTGGAGAACTACTTGGAGAA < 41bp 0.7293868185641 0.386990623490047 0.8975308 0.42167383 prediction 0.4587736371282 Functional Loss - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41622688 chr22:41622690 nonsynonymous SNV 0.840 4 23 hm5C_associated_SNPs_75449 0 0 1 0 2 L3MBTL2 chr22:41622666 3'AG 41622666 Downstream 25bp
chr22 41622690 41622690 1 + G T SKCM 41622688 + 41622668 41622708 41 TATGAGGCACAGACTTTCAACTGGGAGAACTACTTGGAGAA TATGAGGCACAGACTTTCAACTTGGAGAACTACTTGGAGAA < 41bp 0.7293868185641 0.386990623490047 0.8975308 0.42167383 prediction 0.4587736371282 Functional Loss - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41622688 chr22:41622690 nonsynonymous SNV 0.840 4 23 hm5C_associated_SNPs_75449 0 0 1 0 2 L3MBTL2 chr22:41622748 5'GT 41622748 Upstream 59bp
chr4 187206920 187206920 1 + G T STAD 187206918 + 187206898 187206938 41 CAGTATAAAATGGCAGAAAGCGGGTATGATATTGCCTTGTT CAGTATAAAATGGCAGAAAGCGTGTATGATATTGCCTTGTT < 41bp 0.729385798139902 0.390281574275272 0.55930406 0.08883777 prediction 0.458771596279804 Functional Loss - F11 ENSG00000088926 CDS Human protein_coding chr4:187206918 chr4:187206920 nonsynonymous SNV 0.991 5 23 hm5C_associated_SNPs_75450 0 0 0 0 1 F11 chr4:187206967 5'GT 187206967 Upstream 48bp
chr1 226016613 226016613 1 + C T COAD 226016611 + 226016591 226016631 41 AAACGTCAGATGAGGAGATCCACGTAAGGCACCTTGGGCCG AAACGTCAGATGAGGAGATCCATGTAAGGCACCTTGGGCCG < 41bp 0.805347559099011 0.575962915016779 0.6587484 0.8158599 prediction 0.458769288164462 Functional Loss - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226016611 chr1:226016613 synonymous SNV . 0 23 hm5C_associated_SNPs_75451 0 0 0 0 1 EPHX1 chr1:226016613 5'GT 226016613 Upstream 1bp
chr14 22204478 22204478 1 + G T OV 22204476 + 22204456 22204496 41 ACAGCAAAAGAGCCTAGAACCTGGGTCCTAGTTTGCACCTA ACAGCAAAAGAGCCTAGAACCTTGGTCCTAGTTTGCACCTA < 41bp 0.729379078053235 0.398653988597226 0.8384319 0.1249904 prediction 0.458758156106469 Functional Loss - OR4E1;LINC02332 ENSG00000211778 UTR5 Human TR_V_gene chr14:22204476 chr14:22204478 . . 0 23 hm5C_associated_SNPs_75455 0 0 0 0 1 OR4E1;LINC02332 chr14:22204540 5'GT 22204540 Upstream 63bp
chr8 24255247 24255247 1 + G A SKCM 24255244 + 24255224 24255264 41 ACATTGATCTCTATTTGGTGCTGGATAATGCCTTTGTGAGT ACATTGATCTCTATTTGGTGCTGAATAATGCCTTTGTGAGT < 41bp 0.751947592803155 0.522570661874474 0.29241335 0.119497865 prediction 0.458753861857362 Functional Loss - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24255244 chr8:24255247 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_75458 0 0 0 0 2 ADAMDEC1 chr8:24255196 3'AG 24255196 Downstream 52bp
chr8 24255247 24255247 1 + G A SKCM 24255244 + 24255224 24255264 41 ACATTGATCTCTATTTGGTGCTGGATAATGCCTTTGTGAGT ACATTGATCTCTATTTGGTGCTGAATAATGCCTTTGTGAGT < 41bp 0.751947592803155 0.522570661874474 0.29241335 0.119497865 prediction 0.458753861857362 Functional Loss - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24255244 chr8:24255247 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_75458 0 0 0 0 2 ADAMDEC1 chr8:24255258 5'GT 24255258 Upstream 12bp
chr20 34502088 34502088 1 + T C LIHC 34502087 + 34502067 34502107 41 GCAGCTTCATGGCCCAGAATCTGGACACCACAAAGGGAAAG GCAGCTTCATGGCCCAGAATCCGGACACCACAAAGGGAAAG < 41bp 0.801722792764914 0.572349782590374 0.5229919 0.84149534 prediction 0.458746020349081 Functional Loss - PHF20 ENSG00000025293 CDS Human protein_coding chr20:34502087 chr20:34502088 synonymous SNV . 0 22 hm5C_associated_SNPs_75460 0 0 1 0 1 PHF20 chr20:34502119 5'GT 34502119 Upstream 32bp
chr6 36178238 36178238 1 + C T COAD 36178236 + 36178216 36178256 41 CAGAGAACATCGGCTATGACCCCGAGAGGGGCACTCACCTG CAGAGAACATCGGCTATGACCCTGAGAGGGGCACTCACCTG < 41bp 0.841716631847415 0.612345884875451 0.47093752 0.37410015 prediction 0.458741493943927 Functional Loss - BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36178236 chr6:36178238 synonymous SNV . 0 23 hm5C_associated_SNPs_75461 0 0 1 0 1 BRPF3 chr6:36178305 5'GT 36178305 Upstream 68bp
chr1 175105001 175105001 1 + T C LUSC 175105000 + 175104980 175105020 41 GGTCTTCCAGAGGCGGAACACTGGGCAGCTGGATTTCTTCA GGTCTTCCAGAGGCGGAACACCGGGCAGCTGGATTTCTTCA < 41bp 0.729367094936046 0.495784347803523 0.43414617 0.7630155 prediction 0.458734189872092 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175105000 chr1:175105001 synonymous SNV . 0 22 hm5C_associated_SNPs_75463 0 0 0 0 2 TNN chr1:175104981 3'AG 175104981 Downstream 21bp
chr1 175105001 175105001 1 + T C LUSC 175105000 + 175104980 175105020 41 GGTCTTCCAGAGGCGGAACACTGGGCAGCTGGATTTCTTCA GGTCTTCCAGAGGCGGAACACCGGGCAGCTGGATTTCTTCA < 41bp 0.729367094936046 0.495784347803523 0.43414617 0.7630155 prediction 0.458734189872092 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175105000 chr1:175105001 synonymous SNV . 0 22 hm5C_associated_SNPs_75463 0 0 0 0 2 TNN chr1:175105077 5'GT 175105077 Upstream 77bp
chrX 100493996 100493996 1 + G T rs61742259 100493994 + 100493974 100494014 41 TTATGGAAGAAGTCAAGTCTCGGGGCCCCTACATCTATTCT TTATGGAAGAAGTCAAGTCTCGTGGCCCCTACATCTATTCT < 41bp 0.729362326206638 0.363743895532131 0.93131244 0.07591054 prediction 0.458724652413275 Functional Loss - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100493994 chrX:100493996 synonymous SNV . 0 23 hm5C_associated_SNPs_75466 0 0 0 0 2 DRP2 chrX:100493970 3'AG 100493970 Downstream 27bp
chrX 100493996 100493996 1 + G T rs61742259 100493994 + 100493974 100494014 41 TTATGGAAGAAGTCAAGTCTCGGGGCCCCTACATCTATTCT TTATGGAAGAAGTCAAGTCTCGTGGCCCCTACATCTATTCT < 41bp 0.729362326206638 0.363743895532131 0.93131244 0.07591054 prediction 0.458724652413275 Functional Loss - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100493994 chrX:100493996 synonymous SNV . 0 23 hm5C_associated_SNPs_75466 0 0 0 0 2 DRP2 chrX:100494090 5'GT 100494090 Upstream 95bp
chr20 47591350 47591350 1 + C T HNSC 47591348 + 47591328 47591368 41 TGGAGTGCCTCGTGTCCATTCTCAAGTGCATGGTGGAGTGG TGGAGTGCCTCGTGTCCATTCTTAAGTGCATGGTGGAGTGG < 41bp 0.729362249135819 0.431316284707134 0.24250886 0.068243384 prediction 0.458724498271637 Functional Loss - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47591348 chr20:47591350 synonymous SNV . 0 23 hm5C_associated_SNPs_75467 0 0 1 0 2 ARFGEF2 chr20:47591303 3'AG 47591303 Downstream 48bp
chr20 47591350 47591350 1 + C T HNSC 47591348 + 47591328 47591368 41 TGGAGTGCCTCGTGTCCATTCTCAAGTGCATGGTGGAGTGG TGGAGTGCCTCGTGTCCATTCTTAAGTGCATGGTGGAGTGG < 41bp 0.729362249135819 0.431316284707134 0.24250886 0.068243384 prediction 0.458724498271637 Functional Loss - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47591348 chr20:47591350 synonymous SNV . 0 23 hm5C_associated_SNPs_75467 0 0 1 0 2 ARFGEF2 chr20:47591411 5'GT 47591411 Upstream 62bp
chr8 145730386 145730386 1 + T C COAD 145730385 + 145730365 145730405 41 TCCTGCCCGAGTCCAGGGGCCTACAGCGTCAGCTCCGGCAT TCCTGCCCGAGTCCAGGGGCCCACAGCGTCAGCTCCGGCAT < 41bp 0.729360458588592 0.478017056424637 0.58452076 0.14303723 prediction 0.458720917177185 Functional Loss - GPT ENSG00000167701 CDS Human protein_coding chr8:145730385 chr8:145730386 nonsynonymous SNV 0.132 4 22 hm5C_associated_SNPs_75468 0 0 1 0 1 GPT chr8:145730381 3'AG 145730381 Downstream 6bp
chr11 31531535 31531535 1 + A C LUAD 31531534 + 31531514 31531554 41 GCTGGTATCAACCGGGCTCCCAGCCCTAGACCAGCTCTTAG GCTGGTATCAACCGGGCTCCCCGCCCTAGACCAGCTCTTAG < 41bp 0.768692334166742 0.539333150259551 0.20978975 0.06654158 prediction 0.458718367814382 Functional Loss - ELP4 ENSG00000109911 CDS Human protein_coding chr11:31531534 chr11:31531535 synonymous SNV . 0 22 hm5C_associated_SNPs_75469 0 0 1 0 1 ELP4 chr11:31531554 5'GT 31531554 Upstream 20bp
chr2 74435816 74435816 1 + C T SKCM 74435813 + 74435793 74435833 41 GTATTCCATGTTACCGGCTACTCCATGGGGTGTGTGGGAAA GTATTCCATGTTACCGGCTACTCTATGGGGTGTGTGGGAAA < 41bp 0.7293587826301 0.489674488822926 0.96412313 0.9347738 prediction 0.4587175652602 Functional Loss - MTHFD2 ENSG00000065911 CDS Human protein_coding chr2:74435813 chr2:74435816 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_75470 0 0 1 0 1 MTHFD2 chr2:74435848 5'GT 74435848 Upstream 33bp
chr19 40504257 40504257 1 + C T rs563302788 40504255 + 40504235 40504275 41 TGCAGGTGGACCCTCCTCTTCACGGGCCTCCAAATGACTTT TGCAGGTGGACCCTCCTCTTCATGGGCCTCCAAATGACTTT < 41bp 0.799884648396838 0.57053320708242 0.035690606 0.022996068 prediction 0.458702882628836 Functional Loss - ZNF546 ENSG00000187187 CDS Human protein_coding chr19:40504255 chr19:40504257 synonymous SNV . 0 23 hm5C_associated_SNPs_75472 0 0 0 0 1 ZNF546 chr19:40504317 5'GT 40504317 Upstream 61bp
chr12 113730845 113730845 1 + G T HNSC 113730843 + 113730823 113730863 41 CCTCCTCGGATGTCACCAGGCTGCTGGAGACCCTCTCCCAG CCTCCTCGGATGTCACCAGGCTTCTGGAGACCCTCTCCCAG < 41bp 0.729351205580718 0.376152351733963 0.77913934 0.66940576 prediction 0.458702411161437 Functional Loss - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113730843 chr12:113730845 synonymous SNV . 0 23 hm5C_associated_SNPs_75473 0 0 1 0 1 TPCN1 chr12:113730878 5'GT 113730878 Upstream 34bp
chr19 19168436 19168436 1 + G A STAD 19168433 + 19168413 19168453 41 CCAGAGGGGCAACCTGGCGCCATGACCCCAGGCCCAGTCTG CCAGAGGGGCAACCTGGCGCCATAACCCCAGGCCCAGTCTG < 41bp 0.747557396285953 0.518217143285105 0.150363 0.10968664 prediction 0.458680506001696 Functional Loss - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19168433 chr19:19168436 synonymous SNV . 0 24 hm5C_associated_SNPs_75478 0 0 0 0 1 ARMC6 chr19:19168467 5'GT 19168467 Upstream 32bp
chrX 2772118 2772118 1 + G A COAD 2772115 + 2772095 2772135 41 CCTTTCTGAAGAGACCTGAGCTCGGGCTCACCCTCACCAAG CCTTTCTGAAGAGACCTGAGCTCAGGCTCACCCTCACCAAG < 41bp 0.793702962372896 0.564364190339104 0.14885661 0.082532436 prediction 0.458677544067585 Functional Loss - GYG2 ENSG00000056998 CDS Human protein_coding chrX:2772115 chrX:2772118 nonsynonymous SNV 0.661 3 24 hm5C_associated_SNPs_75479 0 0 1 0 1 GYG2 chrX:2772195 5'GT 2772195 Upstream 78bp
chr12 31244771 31244771 1 + C T HNSC 31244769 + 31244749 31244789 41 CACAACCTGATCGACACCATCACGGGCATGCACAGCGTGGA CACAACCTGATCGACACCATCATGGGCATGCACAGCGTGGA < 41bp 0.807041942929576 0.577705158337787 0.69397205 0.80190665 prediction 0.458673569183579 Functional Loss - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244769 chr12:31244771 nonsynonymous SNV 0.801 4 23 hm5C_associated_SNPs_75481 0 0 0 0 1 DDX11 chr12:31244805 5'GT 31244805 Upstream 35bp
chr3 9739418 9739418 1 + G A UCEC 9739415 + 9739395 9739435 41 ATCAGTGGACCATCCCCTGCCCGGATCCTCTCTCTCCACAG ATCAGTGGACCATCCCCTGCCCGAATCCTCTCTCTCCACAG < 41bp 0.759832151564386 0.530499159347213 0.21282509 0.02849847 prediction 0.458665984434347 Functional Loss - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9739415 chr3:9739418 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_75483 0 0 1 1 1 MTMR14 chr3:9739395 3'AG 9739395 Downstream 24bp
chr11 1099233 1099233 1 + G A SKCM 1099230 + 1099210 1099250 41 GTGGTGGAGTGCCCATCTCACAGGGAGTACCAGGCCTGTGG GTGGTGGAGTGCCCATCTCACAGAGAGTACCAGGCCTGTGG < 41bp 0.759696619644727 0.530363703254489 0.92914295 0.89875865 prediction 0.458665832780475 Functional Loss - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1099230 chr11:1099233 synonymous SNV . 0 24 hm5C_associated_SNPs_75484 0 0 0 0 2 MUC2 chr11:1099211 3'AG 1099211 Downstream 23bp
chr11 1099233 1099233 1 + G A SKCM 1099230 + 1099210 1099250 41 GTGGTGGAGTGCCCATCTCACAGGGAGTACCAGGCCTGTGG GTGGTGGAGTGCCCATCTCACAGAGAGTACCAGGCCTGTGG < 41bp 0.759696619644727 0.530363703254489 0.92914295 0.89875865 prediction 0.458665832780475 Functional Loss - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1099230 chr11:1099233 synonymous SNV . 0 24 hm5C_associated_SNPs_75484 0 0 0 0 2 MUC2 chr11:1099280 5'GT 1099280 Upstream 48bp
chr15 101420211 101420211 1 + G C OV 101420207 + 101420187 101420227 41 CAACCTGGAGGTCAAGTTCACCAAGGTGAGGCGGGCGCCCC CAACCTGGAGGTCAAGTTCACCAACGTGAGGCGGGCGCCCC < 41bp 0.729329335560115 0.459524127896335 0.7286795 0.40166113 prediction 0.45865867112023 Functional Loss - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101420207 chr15:101420211 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_75485 0 0 0 0 1 ALDH1A3 chr15:101420211 5'GT 101420211 Upstream 1bp
chr1 17250864 17250864 1 + G A SKCM 17250861 + 17250841 17250881 41 TGGCATCGCTGCTGTCGCTGCAGGAGGAGAACCAGCTGCTG TGGCATCGCTGCTGTCGCTGCAGAAGGAGAACCAGCTGCTG < 41bp 0.760142431935642 0.5308137885516 0.9009266 0.8101359 prediction 0.458657286768084 Functional Loss - CROCC ENSG00000058453 CDS Human protein_coding chr1:17250861 chr1:17250864 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_75486 0 0 0 0 1 CROCC chr1:17250820 3'AG 17250820 Downstream 45bp
chr6 26451990 26451990 1 + G C SKCM 26451989 + 26451969 26452009 41 TGCAGCGTGCTGAAGAGCCGCGGGATCTGCCAGACAACCCT TGCAGCGTGCTGAAGAGCCGCCGGATCTGCCAGACAACCCT < 41bp 0.870658458801807 0.641335450096194 0.87379825 0.50348383 prediction 0.458646017411227 Functional Loss - BTN3A3 ENSG00000111801 CDS Human protein_coding chr6:26451989 chr6:26451990 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_75493 0 0 0 0 1 BTN3A3 chr6:26451903 3'AG 26451903 Downstream 88bp
chr17 72738419 72738419 1 + G A SKCM 72738416 + 72738396 72738436 41 AAGGTGGTGACTGTGGATGGCGTGAGAGTGAAGCTGCAGGT AAGGTGGTGACTGTGGATGGCGTAAGAGTGAAGCTGCAGGT < 41bp 0.72932029057794 0.497920159417967 0.36511955 0.16467136 prediction 0.458640581155879 Functional Loss - RAB37 ENSG00000172794 CDS Human protein_coding chr17:72738416 chr17:72738419 synonymous SNV . 0 24 hm5C_associated_SNPs_75495 0 0 0 0 2 RAB37 chr17:72738393 3'AG 72738393 Downstream 27bp
chr17 72738419 72738419 1 + G A SKCM 72738416 + 72738396 72738436 41 AAGGTGGTGACTGTGGATGGCGTGAGAGTGAAGCTGCAGGT AAGGTGGTGACTGTGGATGGCGTAAGAGTGAAGCTGCAGGT < 41bp 0.72932029057794 0.497920159417967 0.36511955 0.16467136 prediction 0.458640581155879 Functional Loss - RAB37 ENSG00000172794 CDS Human protein_coding chr17:72738416 chr17:72738419 synonymous SNV . 0 24 hm5C_associated_SNPs_75495 0 0 0 0 2 RAB37 chr17:72738434 5'GT 72738434 Upstream 16bp
chr22 44528781 44528781 1 + C T rs34069747 44528779 + 44528759 44528799 41 TCCTTCCTCCTGCAGCAATTCACGGGAAGAACCTGGTGGCC TCCTTCCTCCTGCAGCAATTCATGGGAAGAACCTGGTGGCC < 41bp 0.825623015968805 0.596305428602704 0.71072906 0.630358 prediction 0.458635174732203 Functional Loss - PARVB ENSG00000188677 CDS Human protein_coding chr22:44528779 chr22:44528781 synonymous SNV . 0 23 hm5C_associated_SNPs_75498 0 0 0 0 1 PARVB chr22:44528774 3'AG 44528774 Downstream 8bp
chrX 36162748 36162748 1 + C T SKCM 36162746 + 36162726 36162766 41 CTGAGAAAGGAAGATATGCCCTCAGTGTGGGTTGTTACCAT CTGAGAAAGGAAGATATGCCCTTAGTGTGGGTTGTTACCAT < 41bp 0.802269000859724 0.572952178867316 0.19736499 0.15093428 prediction 0.458633643984816 Functional Loss - CFAP47 ENSG00000176034 CDS Human other chrX:36162746 chrX:36162748 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_75499 0 0 0 0 1 CFAP47 chrX:36162678 3'AG 36162678 Downstream 71bp
chr9 133333811 133333811 1 + G A SKCM 133333808 + 133333788 133333828 41 GTGTTCATTGAGGATGTCAGCAGGGAGTTTGTGGAGGAGTT GTGTTCATTGAGGATGTCAGCAGAGAGTTTGTGGAGGAGTT < 41bp 0.775072857825111 0.545756916909994 0.9097794 0.794413 prediction 0.458631881830235 Functional Loss - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133333808 chr9:133333811 synonymous SNV . 0 24 hm5C_associated_SNPs_75500 0 0 1 0 1 ASS1 chr9:133333788 3'AG 133333788 Downstream 24bp
chr15 90897952 90897952 1 + C T rs8023776 90897950 + 90897930 90897970 41 GACACTGCTTAGAGAATCCTCTCCAGGAATGCCACCCAGCA GACACTGCTTAGAGAATCCTCTTCAGGAATGCCACCCAGCA < 41bp 0.857135720698817 0.627823686135781 0.9496808 0.10217732 prediction 0.458624069126073 Functional Loss - ZNF774 ENSG00000196391 CDS Human protein_coding chr15:90897950 chr15:90897952 synonymous SNV . 0 23 hm5C_associated_SNPs_75504 0 0 1 0 1 ZNF774 chr15:90897874 3'AG 90897874 Downstream 79bp
chr1 28879629 28879629 1 + G T SARC 28879627 + 28879607 28879647 41 ACCCCGGTGCGCGGGTATGGCGGCCAGCCTGTGGATGGGCG ACCCCGGTGCGCGGGTATGGCGTCCAGCCTGTGGATGGGCG < 41bp 0.729310469407692 0.385716462886768 0.31432444 0.1613748 prediction 0.458620938815384 Functional Loss - TRNAU1AP ENSG00000180098 CDS Human protein_coding chr1:28879627 chr1:28879629 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_75506 0 0 1 0 1 TRNAU1AP chr1:28879649 5'GT 28879649 Upstream 21bp
chr14 59961874 59961874 1 + G T LIHC 59961871 + 59961851 59961891 41 TTGATGCTTTCTGACTGGTACACGATGCTTTACAACCCAAG TTGATGCTTTCTGACTGGTACACTATGCTTTACAACCCAAG < 41bp 0.729304820423294 0.354474072493101 0.06581816 0.055596083 prediction 0.458609640846588 Functional Loss - JKAMP ENSG00000050130 CDS Human protein_coding chr14:59961871 chr14:59961874 synonymous SNV . 0 24 hm5C_associated_SNPs_75508 0 0 1 0 1 JKAMP chr14:59961942 5'GT 59961942 Upstream 69bp
chr14 59961873 59961873 1 + C T UCEC 59961871 + 59961851 59961891 41 TTGATGCTTTCTGACTGGTACACGATGCTTTACAACCCAAG TTGATGCTTTCTGACTGGTACATGATGCTTTACAACCCAAG < 41bp 0.729304820423294 0.44566907050446 0.06581816 0.11466834 prediction 0.458609640846588 Functional Loss - JKAMP ENSG00000050130 CDS Human protein_coding chr14:59961871 chr14:59961873 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_75509 0 0 1 0 1 JKAMP chr14:59961942 5'GT 59961942 Upstream 70bp
chr3 107646807 107646807 1 + G T rs9837335 107646805 + 107646785 107646825 41 ACTGCAGCCTCGCGGGCTGCCCGGGACTTCATCAAGCCCGG ACTGCAGCCTCGCGGGCTGCCCTGGACTTCATCAAGCCCGG < 41bp 0.903946756524249 0.67464950463979 0.8494624 0.14193591 prediction 0.458594503768917 Functional Loss - LINC00636 ENSG00000240423 ncRNA_exonic Human lincRNA chr3:107646805 chr3:107646807 . . 0 23 hm5C_associated_SNPs_75511 0 0 0 0 1 LINC00636 chr3:107646720 3'AG 107646720 Downstream 88bp
chr6 36263149 36263149 1 + C T UCEC 36263147 + 36263127 36263167 41 GCCTCCGCCCACAGATCCTGCACGATTACTACTACCGAGGG GCCTCCGCCCACAGATCCTGCATGATTACTACTACCGAGGG < 41bp 0.823235001739779 0.593939925437207 0.29668856 0.3253326 prediction 0.458590152605144 Functional Loss - PNPLA1 ENSG00000180316 CDS Human protein_coding chr6:36263147 chr6:36263149 synonymous SNV . 0 23 hm5C_associated_SNPs_75514 0 0 0 0 2 PNPLA1 chr6:36263141 3'AG 36263141 Downstream 9bp
chr6 36263149 36263149 1 + C T UCEC 36263147 + 36263127 36263167 41 GCCTCCGCCCACAGATCCTGCACGATTACTACTACCGAGGG GCCTCCGCCCACAGATCCTGCATGATTACTACTACCGAGGG < 41bp 0.823235001739779 0.593939925437207 0.29668856 0.3253326 prediction 0.458590152605144 Functional Loss - PNPLA1 ENSG00000180316 CDS Human protein_coding chr6:36263147 chr6:36263149 synonymous SNV . 0 23 hm5C_associated_SNPs_75514 0 0 0 0 2 PNPLA1 chr6:36263201 5'GT 36263201 Upstream 53bp
chrX 151908875 151908875 1 + G C LGG 151908871 + 151908851 151908891 41 CACTGGTCTGGTGAAGATGTCCAGGAAACCACGAGCCTCCA CACTGGTCTGGTGAAGATGTCCAGCAAACCACGAGCCTCCA < 41bp 0.729292362234175 0.430988864279167 0.29881287 0.1456958 prediction 0.45858472446835 Functional Loss - CSAG1 ENSG00000198930 CDS Human protein_coding chrX:151908871 chrX:151908875 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_75516 0 0 0 0 1 CSAG1 chrX:151908778 3'AG 151908778 Downstream 98bp
chrX 48457983 48457983 1 + G A COAD 48457980 + 48457960 48458000 41 CCTATTGGGGCCCAGGCCCCCTGGCAGCGTGGTGCCCACGT CCTATTGGGGCCCAGGCCCCCTGACAGCGTGGTGCCCACGT < 41bp 0.729291649892332 0.492965557440745 0.07931456 0.03130302 prediction 0.458583299784664 Functional Loss - WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457980 chrX:48457983 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_75517 0 0 1 0 1 WDR13 chrX:48457975 3'AG 48457975 Downstream 9bp
chr7 66237049 66237049 1 + T C SKCM 66237048 + 66237028 66237068 41 CAGAAGCAGATTCAGGAGGACTGGGAGCTGGCGGAGCGGTA CAGAAGCAGATTCAGGAGGACCGGGAGCTGGCGGAGCGGTA < 41bp 0.749805608482334 0.520519844303988 0.90331084 0.91147536 prediction 0.458571528356691 Functional Loss - RABGEF1 ENSG00000154710;ENSG00000243335 CDS Human other chr7:66237048 chr7:66237049 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_75521 0 0 1 0 1 RABGEF1 chr7:66237065 5'GT 66237065 Upstream 17bp
chr15 66599257 66599257 1 + A C rs367709961 66599253 + 66599233 66599273 41 AGCAATGCTGCTATCTGCCACGGGAAAGAGGAGAGTCCATG AGCAATGCTGCTATCTGCCACGGGCAAGAGGAGAGTCCATG < 41bp 0.729285689902203 0.316843973528345 0.8143002 0.4529916 prediction 0.458571379804406 Functional Loss - DIS3L ENSG00000166938 CDS Human protein_coding chr15:66599253 chr15:66599257 nonsynonymous SNV 0.086 3 25 hm5C_associated_SNPs_75522 0 0 1 0 3 DIS3L chr15:66599162 3'AG 66599162 Downstream 96bp
chr15 66599257 66599257 1 + A C rs367709961 66599253 + 66599233 66599273 41 AGCAATGCTGCTATCTGCCACGGGAAAGAGGAGAGTCCATG AGCAATGCTGCTATCTGCCACGGGCAAGAGGAGAGTCCATG < 41bp 0.729285689902203 0.316843973528345 0.8143002 0.4529916 prediction 0.458571379804406 Functional Loss - DIS3L ENSG00000166938 CDS Human protein_coding chr15:66599253 chr15:66599257 nonsynonymous SNV 0.086 3 25 hm5C_associated_SNPs_75522 0 0 1 0 3 DIS3L chr15:66599235 3'AG 66599235 Downstream 23bp
chr15 66599257 66599257 1 + A C rs367709961 66599253 + 66599233 66599273 41 AGCAATGCTGCTATCTGCCACGGGAAAGAGGAGAGTCCATG AGCAATGCTGCTATCTGCCACGGGCAAGAGGAGAGTCCATG < 41bp 0.729285689902203 0.316843973528345 0.8143002 0.4529916 prediction 0.458571379804406 Functional Loss - DIS3L ENSG00000166938 CDS Human protein_coding chr15:66599253 chr15:66599257 nonsynonymous SNV 0.086 3 25 hm5C_associated_SNPs_75522 0 0 1 0 3 DIS3L chr15:66599290 5'GT 66599290 Upstream 34bp
chr11 93528152 93528152 1 + G A LUSC 93528149 + 93528129 93528169 41 AGAAATTTTTGCACAGCTCTCTCGGGAAGCTGTTCAAATTA AGAAATTTTTGCACAGCTCTCTCAGGAAGCTGTTCAAATTA < 41bp 0.749472315156098 0.520194418303774 0.064608365 0.019208401 prediction 0.458555793704648 Functional Loss - MED17 ENSG00000042429 CDS Human protein_coding chr11:93528149 chr11:93528152 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_75524 0 0 1 0 2 MED17 chr11:93528074 3'AG 93528074 Downstream 79bp
chr11 93528152 93528152 1 + G A LUSC 93528149 + 93528129 93528169 41 AGAAATTTTTGCACAGCTCTCTCGGGAAGCTGTTCAAATTA AGAAATTTTTGCACAGCTCTCTCAGGAAGCTGTTCAAATTA < 41bp 0.749472315156098 0.520194418303774 0.064608365 0.019208401 prediction 0.458555793704648 Functional Loss - MED17 ENSG00000042429 CDS Human protein_coding chr11:93528149 chr11:93528152 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_75524 0 0 1 0 2 MED17 chr11:93528226 5'GT 93528226 Upstream 75bp
chr10 115338471 115338471 1 + G T OV 115338468 + 115338448 115338488 41 AACCAGCATGCGTGCCTTTACTGGAACTCCCACCTCCTCTT AACCAGCATGCGTGCCTTTACTGTAACTCCCACCTCCTCTT < 41bp 0.928133417431723 0.698857653066134 0.7924702 0.12874958 prediction 0.458551528731177 Functional Loss - HABP2 ENSG00000148702 CDS Human protein_coding chr10:115338468 chr10:115338471 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_75527 0 0 0 0 1 HABP2 chr10:115338386 3'AG 115338386 Downstream 86bp
chr9 35750883 35750883 1 + G T LUSC 35750881 + 35750861 35750901 41 TAGAGGGACCACCCTCCTTTCGGGGTCAGTCAGTCAAGTAC TAGAGGGACCACCCTCCTTTCGTGGTCAGTCAGTCAAGTAC < 41bp 0.89923267660164 0.669960394282357 0.9479226 0.8772458 prediction 0.458544564638565 Functional Loss - RGP1 ENSG00000107185 CDS Human protein_coding chr9:35750881 chr9:35750883 synonymous SNV . 0 23 hm5C_associated_SNPs_75528 0 0 1 0 1 RGP1 chr9:35750837 3'AG 35750837 Downstream 47bp
chr13 53227190 53227190 1 + G T GBM 53227187 + 53227167 53227207 41 TGTTTTCCTGACAGGTTTTTCCAGAGCTTCTCGGATGCCCT TGTTTTCCTGACAGGTTTTTCCATAGCTTCTCGGATGCCCT < 41bp 0.729271596216761 0.377470216121046 0.88796616 0.37937516 prediction 0.458543192433521 Functional Loss - SUGT1 ENSG00000165416 CDS Human protein_coding chr13:53227187 chr13:53227190 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_75529 0 0 1 0 2 SUGT1 chr13:53227181 3'AG 53227181 Downstream 10bp
chr13 53227190 53227190 1 + G T GBM 53227187 + 53227167 53227207 41 TGTTTTCCTGACAGGTTTTTCCAGAGCTTCTCGGATGCCCT TGTTTTCCTGACAGGTTTTTCCATAGCTTCTCGGATGCCCT < 41bp 0.729271596216761 0.377470216121046 0.88796616 0.37937516 prediction 0.458543192433521 Functional Loss - SUGT1 ENSG00000165416 CDS Human protein_coding chr13:53227187 chr13:53227190 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_75529 0 0 1 0 2 SUGT1 chr13:53227238 5'GT 53227238 Upstream 49bp
chr9 33798051 33798051 1 + C T SKCM 33798049 + 33798029 33798069 41 GCTGGCACTGAGTGCCTCATCTCCGGCTGGGGCAACACTCT GCTGGCACTGAGTGCCTCATCTTCGGCTGGGGCAACACTCT < 41bp 0.834786922055925 0.60552257773185 0.85778487 0.5759345 prediction 0.458528688648149 Functional Loss - PRSS3 ENSG00000010438 CDS Human protein_coding chr9:33798049 chr9:33798051 nonsynonymous SNV 0.119 5 23 hm5C_associated_SNPs_75534 0 0 0 0 1 PRSS3 chr9:33798080 5'GT 33798080 Upstream 30bp
chr7 73771724 73771724 1 + G A LGG 73771721 + 73771701 73771741 41 AGCTGCTGGCTGAACGAGACCTGGAACGGGCTGAGGTGGCC AGCTGCTGGCTGAACGAGACCTGAAACGGGCTGAGGTGGCC < 41bp 0.773004407319933 0.543742957809033 0.053630322 0.021844804 prediction 0.4585228990218 Functional Loss - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73771721 chr7:73771724 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_75536 0 0 0 0 1 CLIP2 chr7:73771807 5'GT 73771807 Upstream 84bp
chr5 224567 224567 1 + T C CESC 224566 + 224546 224586 41 GCGAGCTGCATTTGGCCTTTCTGAGGCAGGGTTTAATACAG GCGAGCTGCATTTGGCCTTTCCGAGGCAGGGTTTAATACAG < 41bp 0.770582487547174 0.541325433380891 0.55909973 0.8866486 prediction 0.458514108332564 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:224566 chr5:224567 synonymous SNV . 0 22 hm5C_associated_SNPs_75539 0 0 1 0 2 SDHA chr5:224475 3'AG 224475 Downstream 93bp
chr5 224567 224567 1 + T C CESC 224566 + 224546 224586 41 GCGAGCTGCATTTGGCCTTTCTGAGGCAGGGTTTAATACAG GCGAGCTGCATTTGGCCTTTCCGAGGCAGGGTTTAATACAG < 41bp 0.770582487547174 0.541325433380891 0.55909973 0.8866486 prediction 0.458514108332564 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:224566 chr5:224567 synonymous SNV . 0 22 hm5C_associated_SNPs_75539 0 0 1 0 2 SDHA chr5:224636 5'GT 224636 Upstream 70bp
chr11 93911725 93911725 1 + C T PAAD 93911723 + 93911703 93911743 41 GACATGAGAGATGGAGCCTGCTCAGTTCCAGGTGTTACCGA GACATGAGAGATGGAGCCTGCTTAGTTCCAGGTGTTACCGA < 41bp 0.72925172419806 0.449480844988847 0.04559359 0.06273383 prediction 0.458503448396119 Functional Loss - PANX1 ENSG00000110218 CDS Human protein_coding chr11:93911723 chr11:93911725 nonsynonymous SNV 0.009 0 23 hm5C_associated_SNPs_75543 0 0 0 0 1 PANX1 chr11:93911758 5'GT 93911758 Upstream 34bp
chr19 48922977 48922977 1 + C T SKCM 48922975 + 48922955 48922995 41 GTGCTGGTGTGGGCCTTCTTCGCCGTCATCTTCCTCGCCAG GTGCTGGTGTGGGCCTTCTTCGTCGTCATCTTCCTCGCCAG < 41bp 0.825946435030119 0.596697280770386 0.8144029 0.61747617 prediction 0.458498308519466 Functional Loss - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48922975 chr19:48922977 nonsynonymous SNV 0.988 4 23 hm5C_associated_SNPs_75544 0 0 0 0 1 GRIN2D chr19:48923071 5'GT 48923071 Upstream 95bp
chr7 73470667 73470667 1 + G T SARC 73470665 + 73470645 73470685 41 GTTGGAGCTGGGGGCTTTCCCGGCTTTGGTGTCGGAGTCGG GTTGGAGCTGGGGGCTTTCCCGTCTTTGGTGTCGGAGTCGG < 41bp 0.874886287208719 0.645640350041159 0.90350485 0.23520899 prediction 0.458491874335119 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73470665 chr7:73470667 nonsynonymous SNV 0.170 3 23 hm5C_associated_SNPs_75547 0 0 0 0 2 ELN chr7:73470601 3'AG 73470601 Downstream 67bp
chr7 73470667 73470667 1 + G T SARC 73470665 + 73470645 73470685 41 GTTGGAGCTGGGGGCTTTCCCGGCTTTGGTGTCGGAGTCGG GTTGGAGCTGGGGGCTTTCCCGTCTTTGGTGTCGGAGTCGG < 41bp 0.874886287208719 0.645640350041159 0.90350485 0.23520899 prediction 0.458491874335119 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73470665 chr7:73470667 nonsynonymous SNV 0.170 3 23 hm5C_associated_SNPs_75547 0 0 0 0 2 ELN chr7:73470765 5'GT 73470765 Upstream 99bp
chr17 65739701 65739701 1 + A C COAD 65739700 + 65739680 65739720 41 TTTACAAGCTTGTAAAATCTCAGGTTTGTGATTATTTGATA TTTACAAGCTTGTAAAATCTCCGGTTTGTGATTATTTGATA < 41bp 0.729243836668731 0.479697943290425 0.3410207 0.05654919 prediction 0.458487673337463 Functional Loss - NOL11 ENSG00000130935 CDS Human protein_coding chr17:65739700 chr17:65739701 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_75548 0 0 1 0 1 NOL11 chr17:65739702 5'GT 65739702 Upstream 2bp
chr17 61557250 61557250 1 + G T UCEC 61557248 + 61557228 61557268 41 TACGAGGATTTCACTGCCCTCAGCAATGAAGCCTACAAGCA TACGAGGATTTCACTGCCCTCATCAATGAAGCCTACAAGCA < 41bp 0.729243189843638 0.392463369250958 0.52545416 0.109425634 prediction 0.458486379687276 Functional Loss - ACE ENSG00000159640 CDS Human protein_coding chr17:61557248 chr17:61557250 nonsynonymous SNV 0.908 3 23 hm5C_associated_SNPs_75550 0 0 0 0 1 ACE chr17:61557273 5'GT 61557273 Upstream 24bp
chr12 6626089 6626089 1 + C T SKCM 6626086 + 6626066 6626106 41 CTGGAAGCAGCAGCCCGAGACACCAGAGACCAGTTCTTGGA CTGGAAGCAGCAGCCCGAGACACTAGAGACCAGTTCTTGGA < 41bp 0.734115278062314 0.504874417455065 0.1540446 0.086693734 prediction 0.458481721214498 Functional Loss - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6626086 chr12:6626089 synonymous SNV . 0 24 hm5C_associated_SNPs_75552 0 0 1 0 1 NCAPD2 chr12:6625994 3'AG 6625994 Downstream 96bp
chr12 52284445 52284445 1 + A C LUAD 52284444 + 52284424 52284464 41 GTGCTGACCGACAGCTTCGACACCGTGTGGAGGATTCGGCA GTGCTGACCGACAGCTTCGACCCCGTGTGGAGGATTCGGCA < 41bp 0.781249606968707 0.552009765381667 0.11805594 0.1281304 prediction 0.45847968317408 Functional Loss - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52284444 chr12:52284445 nonsynonymous SNV 0.267 3 22 hm5C_associated_SNPs_75553 0 0 0 0 1 ANKRD33 chr12:52284368 3'AG 52284368 Downstream 78bp
chr22 17978494 17978494 1 + G T LUSC 17978491 + 17978471 17978511 41 GCCATTGGGTGAAGACAATTCTGGGGCACTATATTGGTATT GCCATTGGGTGAAGACAATTCTGTGGCACTATATTGGTATT < 41bp 0.729239585411669 0.449961765062563 0.88334537 0.320051 prediction 0.458479170823338 Functional Loss - CECR2 ENSG00000099954 CDS Human protein_coding chr22:17978491 chr22:17978494 nonsynonymous SNV 0.676 2 24 hm5C_associated_SNPs_75554 0 0 1 0 1 CECR2 chr22:17978581 5'GT 17978581 Upstream 88bp
chr22 17978493 17978493 1 + G T UCEC 17978491 + 17978471 17978511 41 GCCATTGGGTGAAGACAATTCTGGGGCACTATATTGGTATT GCCATTGGGTGAAGACAATTCTTGGGCACTATATTGGTATT < 41bp 0.729239585411669 0.4696758664114 0.88334537 0.29654485 prediction 0.458479170823338 Functional Loss - CECR2 ENSG00000099954 CDS Human protein_coding chr22:17978491 chr22:17978493 nonsynonymous SNV 0.685 3 23 hm5C_associated_SNPs_75555 0 0 1 0 1 CECR2 chr22:17978581 5'GT 17978581 Upstream 89bp
chr20 61467614 61467614 1 + G A STAD 61467611 + 61467591 61467631 41 CCAGCGGTGTTCAGGGTGTCCCCGGGCCCCCCGGTCCTCTG CCAGCGGTGTTCAGGGTGTCCCCAGGCCCCCCGGTCCTCTG < 41bp 0.765147115341898 0.535910018437523 0.89820087 0.8362224 prediction 0.45847419380875 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61467611 chr20:61467614 nonsynonymous SNV 0.003 5 24 hm5C_associated_SNPs_75557 0 0 1 0 2 COL9A3 chr20:61467539 3'AG 61467539 Downstream 76bp
chr20 61467614 61467614 1 + G A STAD 61467611 + 61467591 61467631 41 CCAGCGGTGTTCAGGGTGTCCCCGGGCCCCCCGGTCCTCTG CCAGCGGTGTTCAGGGTGTCCCCAGGCCCCCCGGTCCTCTG < 41bp 0.765147115341898 0.535910018437523 0.89820087 0.8362224 prediction 0.45847419380875 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61467611 chr20:61467614 nonsynonymous SNV 0.003 5 24 hm5C_associated_SNPs_75557 0 0 1 0 2 COL9A3 chr20:61467685 5'GT 61467685 Upstream 72bp
chr1 163298075 163298075 1 + A C OV 163298074 + 163298054 163298094 41 ATGGAAGGCTTCTTACCATTCAGCAATTTAGTTACTCATCT ATGGAAGGCTTCTTACCATTCCGCAATTTAGTTACTCATCT < 41bp 0.779110457196987 0.549874943204651 0.09777784 0.07981512 prediction 0.458471027984673 Functional Loss - NUF2 ENSG00000143228 CDS Human protein_coding chr1:163298074 chr1:163298075 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_75558 0 0 1 0 2 NUF2 chr1:163298018 3'AG 163298018 Downstream 58bp
chr1 163298075 163298075 1 + A C OV 163298074 + 163298054 163298094 41 ATGGAAGGCTTCTTACCATTCAGCAATTTAGTTACTCATCT ATGGAAGGCTTCTTACCATTCCGCAATTTAGTTACTCATCT < 41bp 0.779110457196987 0.549874943204651 0.09777784 0.07981512 prediction 0.458471027984673 Functional Loss - NUF2 ENSG00000143228 CDS Human protein_coding chr1:163298074 chr1:163298075 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_75558 0 0 1 0 2 NUF2 chr1:163298094 5'GT 163298094 Upstream 20bp
chr4 1803385 1803385 1 + G A rs147769045 1803382 + 1803362 1803402 41 TGGAGCCTGGTCATGGAAAGCGTGGTGCCCTCGGACCGCGG TGGAGCCTGGTCATGGAAAGCGTAGTGCCCTCGGACCGCGG < 41bp 0.774917181250557 0.545684302840606 0.7521839 0.3259666 prediction 0.458465756819902 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1803382 chr4:1803385 synonymous SNV . 0 24 hm5C_associated_SNPs_75560 0 0 1 0 2 FGFR3 chr4:1803347 3'AG 1803347 Downstream 39bp
chr4 1803385 1803385 1 + G A rs147769045 1803382 + 1803362 1803402 41 TGGAGCCTGGTCATGGAAAGCGTGGTGCCCTCGGACCGCGG TGGAGCCTGGTCATGGAAAGCGTAGTGCCCTCGGACCGCGG < 41bp 0.774917181250557 0.545684302840606 0.7521839 0.3259666 prediction 0.458465756819902 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1803382 chr4:1803385 synonymous SNV . 0 24 hm5C_associated_SNPs_75560 0 0 1 0 2 FGFR3 chr4:1803470 5'GT 1803470 Upstream 86bp
chr11 64368361 64368361 1 + G A ACC 64368358 + 64368338 64368378 41 GCCTGGCCGCACTGCTTCTGCCCGAGACCCAGAGCTTGCCG GCCTGGCCGCACTGCTTCTGCCCAAGACCCAGAGCTTGCCG < 41bp 0.768021195380841 0.538789898040298 0.24795634 0.088358074 prediction 0.458462594681086 Functional Loss - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64368358 chr11:64368361 nonsynonymous SNV 0.478 4 24 hm5C_associated_SNPs_75561 0 0 0 0 1 SLC22A12 chr11:64368410 5'GT 64368410 Upstream 50bp
chr19 36276186 36276186 1 + A T LIHC 36276182 + 36276162 36276202 41 GCCGGGGCCCCAGTGTCCCTCGAAAGAAGCCCCTGCCCTGG GCCGGGGCCCCAGTGTCCCTCGAATGAAGCCCCTGCCCTGG < 41bp 0.875848986330496 0.646618001532833 0.9091391 0.88393426 prediction 0.458461969595325 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36276182 chr19:36276186 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_75562 0 0 1 0 2 ARHGAP33 chr19:36276091 3'AG 36276091 Downstream 96bp
chr19 36276186 36276186 1 + A T LIHC 36276182 + 36276162 36276202 41 GCCGGGGCCCCAGTGTCCCTCGAAAGAAGCCCCTGCCCTGG GCCGGGGCCCCAGTGTCCCTCGAATGAAGCCCCTGCCCTGG < 41bp 0.875848986330496 0.646618001532833 0.9091391 0.88393426 prediction 0.458461969595325 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36276182 chr19:36276186 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_75562 0 0 1 0 2 ARHGAP33 chr19:36276236 5'GT 36276236 Upstream 51bp
chr1 32739958 32739958 1 + G A LUAD 32739955 + 32739935 32739975 41 GCTGTGGCTGCAGCTCACACCCGGAAGATGACTGGATGGAA GCTGTGGCTGCAGCTCACACCCGAAAGATGACTGGATGGAA < 41bp 0.755959374039233 0.526732535076623 0.39071077 0.14686847 prediction 0.458453677925219 Functional Loss - LCK ENSG00000182866 CDS Human protein_coding chr1:32739955 chr1:32739958 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_75565 0 0 0 0 1 LCK chr1:32740035 5'GT 32740035 Upstream 78bp
chr17 20107730 20107730 1 + G T UCEC 20107727 + 20107707 20107747 41 CTCAAGAGAGAGGTCTGTGCCACGTGGTCCCTCCAACCCCA CTCAAGAGAGAGGTCTGTGCCACTTGGTCCCTCCAACCCCA < 41bp 0.729223785447497 0.345691559567244 0.025234967 0.0031591356 prediction 0.458447570894995 Functional Loss - SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20107727 chr17:20107730 nonsynonymous SNV 0.944 4 24 hm5C_associated_SNPs_75566 0 0 1 0 1 SPECC1 chr17:20107646 3'AG 20107646 Downstream 85bp
chr4 76489622 76489622 1 + G A BRCA 76489619 + 76489599 76489639 41 TATTTCCCCAGAAGAAGACTCCAGAGAGGAAGCTCATCTGA TATTTCCCCAGAAGAAGACTCCAAAGAGGAAGCTCATCTGA < 41bp 0.74531814839629 0.516101917860975 0.41022077 0.045185596 prediction 0.458432461070629 Functional Loss - C4orf26 ENSG00000174792 CDS Human protein_coding chr4:76489619 chr4:76489622 nonsynonymous SNV 0.090 1 24 hm5C_associated_SNPs_75569 0 0 0 0 1 C4orf26 chr4:76489598 3'AG 76489598 Downstream 25bp
chr11 58722360 58722360 1 + C T SKCM 58722357 + 58722337 58722377 41 TCGTAAACTGGAAACAGAGACTCCAAATCCAAGGTAACGAG TCGTAAACTGGAAACAGAGACTCTAAATCCAAGGTAACGAG < 41bp 0.735824386270023 0.506612201312531 0.94467473 0.86089575 prediction 0.458424369914983 Functional Loss - GLYATL1 ENSG00000166840 CDS Human protein_coding chr11:58722357 chr11:58722360 stopgain 0.002 0 24 hm5C_associated_SNPs_75572 0 0 0 0 1 GLYATL1 chr11:58722369 5'GT 58722369 Upstream 10bp
chr9 27212791 27212791 1 + G T UCEC 27212789 + 27212769 27212809 41 CCGTGTGCTGGAGACGGACCCAGCATTTGCCATTGCCAATA CCGTGTGCTGGAGACGGACCCATCATTTGCCATTGCCAATA < 41bp 0.894431106027081 0.665219897624031 0.30880308 0.057016134 prediction 0.4584224168061 Functional Loss - TEK ENSG00000120156 CDS Human protein_coding chr9:27212789 chr9:27212791 nonsynonymous SNV 0.026 4 23 hm5C_associated_SNPs_75573 0 0 0 0 1 TEK chr9:27212705 3'AG 27212705 Downstream 87bp
chr10 1068630 1068630 1 - C T rs35183510 1068633 - 1068613 1068653 41 CAGAGGTCGGACACGAAAGTCACGTTTCCTGGTGAGTCCGT CAGAGGTCGGACACGAAAGTCACATTTCCTGGTGAGTCCGT < 41bp 0.741116821278958 0.511907944911294 0.20909083 0.11343178 prediction 0.458417752735327 Functional Loss - IDI2 ENSG00000148377 CDS Human protein_coding chr10:1068633 chr10:1068630 synonymous SNV . 0 24 hm5C_associated_SNPs_75574 0 0 0 0 2 IDI2 chr10:1068623 5'GT 1068623 Upstream 8bp
chr10 1068630 1068630 1 - C T rs35183510 1068633 - 1068613 1068653 41 CAGAGGTCGGACACGAAAGTCACGTTTCCTGGTGAGTCCGT CAGAGGTCGGACACGAAAGTCACATTTCCTGGTGAGTCCGT < 41bp 0.741116821278958 0.511907944911294 0.20909083 0.11343178 prediction 0.458417752735327 Functional Loss - IDI2 ENSG00000148377 CDS Human protein_coding chr10:1068633 chr10:1068630 synonymous SNV . 0 24 hm5C_associated_SNPs_75574 0 0 0 0 2 IDI2 chr10:1068715 3'AG 1068715 Downstream 86bp
chr1 117554216 117554216 1 + G A rs34999087 117554213 + 117554193 117554233 41 CCACCATGAGTTCTCAGACTCTCGGTAAGGAGGAAGGTGAG CCACCATGAGTTCTCAGACTCTCAGTAAGGAGGAAGGTGAG < 41bp 0.764798018784469 0.535590214206503 0.21730953 0.1217227 prediction 0.458415609155932 Functional Loss - CD101 ENSG00000134256 CDS Human protein_coding chr1:117554213 chr1:117554216 nonsynonymous SNV 0.501 0 24 hm5C_associated_SNPs_75575 0 0 0 0 1 CD101 chr1:117554172 3'AG 117554172 Downstream 45bp
chr2 119739028 119739028 1 + G A LUAD 119739025 + 119739005 119739045 41 ATGAAAGGAGATGCAGGGGTCATGGGGCCTCCTGGAGCCCA ATGAAAGGAGATGCAGGGGTCATAGGGCCTCCTGGAGCCCA < 41bp 0.72920600421059 0.488101947757687 0.87453794 0.8250557 prediction 0.45841200842118 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119739025 chr2:119739028 nonsynonymous SNV 0.842 1 24 hm5C_associated_SNPs_75576 0 0 0 0 2 MARCO chr2:119738985 3'AG 119738985 Downstream 44bp
chr2 119739028 119739028 1 + G A LUAD 119739025 + 119739005 119739045 41 ATGAAAGGAGATGCAGGGGTCATGGGGCCTCCTGGAGCCCA ATGAAAGGAGATGCAGGGGTCATAGGGCCTCCTGGAGCCCA < 41bp 0.72920600421059 0.488101947757687 0.87453794 0.8250557 prediction 0.45841200842118 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119739025 chr2:119739028 nonsynonymous SNV 0.842 1 24 hm5C_associated_SNPs_75576 0 0 0 0 2 MARCO chr2:119739083 5'GT 119739083 Upstream 56bp
chr17 1940223 1940223 1 + G A CESC 1940220 + 1940200 1940240 41 GATCCTGGGCTGCACATCCCCCCGACTGTCCAAAGAGGTGG GATCCTGGGCTGCACATCCCCCCAACTGTCCAAAGAGGTGG < 41bp 0.740096228320231 0.510892237857099 0.0141046345 0.015465587 prediction 0.458407980926264 Functional Loss - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1940220 chr17:1940223 nonsynonymous SNV 0.760 0 24 hm5C_associated_SNPs_75577 0 0 1 0 2 DPH1 chr17:1940129 3'AG 1940129 Downstream 95bp
chr17 1940223 1940223 1 + G A CESC 1940220 + 1940200 1940240 41 GATCCTGGGCTGCACATCCCCCCGACTGTCCAAAGAGGTGG GATCCTGGGCTGCACATCCCCCCAACTGTCCAAAGAGGTGG < 41bp 0.740096228320231 0.510892237857099 0.0141046345 0.015465587 prediction 0.458407980926264 Functional Loss - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1940220 chr17:1940223 nonsynonymous SNV 0.760 0 24 hm5C_associated_SNPs_75577 0 0 1 0 2 DPH1 chr17:1940250 5'GT 1940250 Upstream 28bp
chr8 125579965 125579965 1 + G T rs189290353 125579962 + 125579942 125579982 41 CATGTGCTTTATCGAAGTGCCAAGTTGGGACCACGGGCCGG CATGTGCTTTATCGAAGTGCCAATTTGGGACCACGGGCCGG < 41bp 0.729203376184109 0.337910524611112 0.1927908 0.080901474 prediction 0.458406752368218 Functional Loss - MTSS1 ENSG00000147684 CDS Human protein_coding chr8:125579962 chr8:125579965 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_75578 0 0 0 0 1 MTSS1 chr8:125579888 3'AG 125579888 Downstream 78bp
chr17 6902743 6902743 1 + G A rs1042356 6902740 + 6902720 6902760 41 CCCTCCAGGCTAGTGCTGCCCTCGGGGATGGAAGAGCTTCA CCCTCCAGGCTAGTGCTGCCCTCAGGGATGGAAGAGCTTCA < 41bp 0.771026248186124 0.541825205366125 0.09803465 0.049343556 prediction 0.458402085639998 Functional Loss - ALOX12 ENSG00000108839 CDS Human protein_coding chr17:6902740 chr17:6902743 synonymous SNV . 0 24 hm5C_associated_SNPs_75580 0 0 0 0 1 ALOX12 chr17:6902785 5'GT 6902785 Upstream 43bp
chr2 189854873 189854873 1 + C T LUSC 189854871 + 189854851 189854891 41 AGAGCGAGGATTGCCTGGACCTCCAGTGAGTCTTCAGCATC AGAGCGAGGATTGCCTGGACCTTCAGTGAGTCTTCAGCATC < 41bp 0.729199165393355 0.439838904674303 0.9337748 0.07635006 prediction 0.458398330786711 Functional Loss - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189854871 chr2:189854873 nonsynonymous SNV 0.981 1 23 hm5C_associated_SNPs_75582 0 0 0 0 2 COL3A1 chr2:189854822 3'AG 189854822 Downstream 52bp
chr2 189854873 189854873 1 + C T LUSC 189854871 + 189854851 189854891 41 AGAGCGAGGATTGCCTGGACCTCCAGTGAGTCTTCAGCATC AGAGCGAGGATTGCCTGGACCTTCAGTGAGTCTTCAGCATC < 41bp 0.729199165393355 0.439838904674303 0.9337748 0.07635006 prediction 0.458398330786711 Functional Loss - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189854871 chr2:189854873 nonsynonymous SNV 0.981 1 23 hm5C_associated_SNPs_75582 0 0 0 0 2 COL3A1 chr2:189854875 5'GT 189854875 Upstream 3bp
chr11 65733421 65733421 1 + G A CESC 65733418 + 65733398 65733438 41 AGCATGCCATTGATTCCTTCCGAGAAGGGGAGACAATGATT AGCATGCCATTGATTCCTTCCGAAAAGGGGAGACAATGATT < 41bp 0.729199153567294 0.486758493184053 0.16781813 0.053316236 prediction 0.458398307134588 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65733418 chr11:65733421 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_75583 0 0 1 0 2 SART1 chr11:65733358 3'AG 65733358 Downstream 64bp
chr11 65733421 65733421 1 + G A CESC 65733418 + 65733398 65733438 41 AGCATGCCATTGATTCCTTCCGAGAAGGGGAGACAATGATT AGCATGCCATTGATTCCTTCCGAAAAGGGGAGACAATGATT < 41bp 0.729199153567294 0.486758493184053 0.16781813 0.053316236 prediction 0.458398307134588 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65733418 chr11:65733421 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_75583 0 0 1 0 2 SART1 chr11:65733457 5'GT 65733457 Upstream 37bp
chr4 146044398 146044398 1 + G C LUAD 146044394 + 146044374 146044414 41 CATTATCTGGTGGTGAACTACAGCGAGTAGCTTTAGCCCTT CATTATCTGGTGGTGAACTACAGCCAGTAGCTTTAGCCCTT < 41bp 0.729198014538213 0.447328663170589 0.37715572 0.0905143 prediction 0.458396029076426 Functional Loss - ABCE1 ENSG00000164163 CDS Human protein_coding chr4:146044394 chr4:146044398 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_75585 0 0 1 0 1 ABCE1 chr4:146044367 3'AG 146044367 Downstream 32bp
chr5 177034312 177034312 1 + G A PAAD 177034309 + 177034289 177034329 41 CCCACCCTGCACAGGTTCAACCGGGCAGCGCTCATCAACGT CCCACCCTGCACAGGTTCAACCGAGCAGCGCTCATCAACGT < 41bp 0.749806184034473 0.520608440964907 0.51550317 0.3217748 prediction 0.458395486139132 Functional Loss - B4GALT7 ENSG00000027847 CDS Human protein_coding chr5:177034309 chr5:177034312 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_75586 0 0 1 0 1 B4GALT7 chr5:177034303 3'AG 177034303 Downstream 10bp
chr8 55370926 55370926 1 + G A STAD 55370923 + 55370903 55370943 41 CGGCGGCCGATGAACGCTTTCATGGTGTGGGCTAAGGACGA CGGCGGCCGATGAACGCTTTCATAGTGTGGGCTAAGGACGA < 41bp 0.72919188606239 0.48988139677189 0.84260297 0.34686953 prediction 0.45838377212478 Functional Loss - SOX17 ENSG00000164736 CDS Human protein_coding chr8:55370923 chr8:55370926 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_75592 0 0 0 0 1 SOX17 chr8:55371005 5'GT 55371005 Upstream 80bp
chr9 95841805 95841805 1 + G A BLCA 95841802 + 95841782 95841822 41 ATGAGGACTTGGAGACGGTGCAGGCCGCATACCTTGGCCTC ATGAGGACTTGGAGACGGTGCAGACCGCATACCTTGGCCTC < 41bp 0.72918679131165 0.470870582167812 0.3403877 0.11602163 prediction 0.4583735826233 Functional Loss - SUSD3 ENSG00000157303 CDS Human protein_coding chr9:95841802 chr9:95841805 nonsynonymous SNV 0.013 1 24 hm5C_associated_SNPs_75596 0 0 0 0 2 SUSD3 chr9:95841753 3'AG 95841753 Downstream 53bp
chr9 95841805 95841805 1 + G A BLCA 95841802 + 95841782 95841822 41 ATGAGGACTTGGAGACGGTGCAGGCCGCATACCTTGGCCTC ATGAGGACTTGGAGACGGTGCAGACCGCATACCTTGGCCTC < 41bp 0.72918679131165 0.470870582167812 0.3403877 0.11602163 prediction 0.4583735826233 Functional Loss - SUSD3 ENSG00000157303 CDS Human protein_coding chr9:95841802 chr9:95841805 nonsynonymous SNV 0.013 1 24 hm5C_associated_SNPs_75596 0 0 0 0 2 SUSD3 chr9:95841884 5'GT 95841884 Upstream 80bp
chr1 146714392 146714392 1 + G C rs1890042 146714391 + 146714371 146714411 41 TACTAGCCGCGGGGGCCAAGCGCCTGGCTTCTTACTGCGGC TACTAGCCGCGGGGGCCAAGCCCCTGGCTTCTTACTGCGGC < 41bp 0.729175362642907 0.421663695245485 0.6466973 0.4746569 prediction 0.458350725285815 Functional Loss - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146714391 chr1:146714392 synonymous SNV . 0 22 hm5C_associated_SNPs_75603 0 0 1 0 1 CHD1L chr1:146714480 5'GT 146714480 Upstream 89bp
chr4 68441150 68441150 1 + G T GBM 68441148 + 68441128 68441168 41 ACCTCACATGCCTTACTGAGCAGAATTCAACTGAAAAGAAC ACCTCACATGCCTTACTGAGCATAATTCAACTGAAAAGAAC < 41bp 0.72917448350085 0.393697774932338 0.21110985 0.08875272 prediction 0.4583489670017 Functional Loss - STAP1 ENSG00000035720 CDS Human protein_coding chr4:68441148 chr4:68441150 nonsynonymous SNV 0.079 1 23 hm5C_associated_SNPs_75605 0 0 0 0 2 STAP1 chr4:68441103 3'AG 68441103 Downstream 48bp
chr4 68441150 68441150 1 + G T GBM 68441148 + 68441128 68441168 41 ACCTCACATGCCTTACTGAGCAGAATTCAACTGAAAAGAAC ACCTCACATGCCTTACTGAGCATAATTCAACTGAAAAGAAC < 41bp 0.72917448350085 0.393697774932338 0.21110985 0.08875272 prediction 0.4583489670017 Functional Loss - STAP1 ENSG00000035720 CDS Human protein_coding chr4:68441148 chr4:68441150 nonsynonymous SNV 0.079 1 23 hm5C_associated_SNPs_75605 0 0 0 0 2 STAP1 chr4:68441216 5'GT 68441216 Upstream 67bp
chr9 102590396 102590396 1 + G A STAD 102590393 + 102590373 102590413 41 TATGCGGCGCAGACATACAGCTCGGAATACACCACGGAGAT TATGCGGCGCAGACATACAGCTCAGAATACACCACGGAGAT < 41bp 0.729167733353968 0.494810936149216 0.115727186 0.07622799 prediction 0.458335466707936 Functional Loss - NR4A3 ENSG00000119508 CDS Human protein_coding chr9:102590393 chr9:102590396 synonymous SNV . 0 24 hm5C_associated_SNPs_75609 0 0 0 0 1 NR4A3 chr9:102590323 3'AG 102590323 Downstream 74bp
chr9 95797697 95797697 1 + G A rs188956640 95797694 + 95797674 95797714 41 GACCCTGAGGAGAGGCTGGACTCGGGGCATGTGTGGAAGCT GACCCTGAGGAGAGGCTGGACTCAGGGCATGTGTGGAAGCT < 41bp 0.758897081097954 0.529729621594846 0.2802286 0.11335784 prediction 0.458334919006214 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95797694 chr9:95797697 synonymous SNV . 0 24 hm5C_associated_SNPs_75610 0 0 0 0 1 FGD3 chr9:95797620 3'AG 95797620 Downstream 78bp
chr16 70500818 70500818 1 + T C UCEC 70500817 + 70500797 70500837 41 TCCCCGCCAGGCGTGTGGGTCTGCAGCACCGACATGCTGCT TCCCCGCCAGGCGTGTGGGTCCGCAGCACCGACATGCTGCT < 41bp 0.729165199266816 0.471264407427915 0.5047545 0.3312197 prediction 0.458330398533632 Functional Loss - FUK ENSG00000157353 CDS Human protein_coding chr16:70500817 chr16:70500818 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_75613 0 0 1 0 2 FUK chr16:70500785 3'AG 70500785 Downstream 34bp
chr16 70500818 70500818 1 + T C UCEC 70500817 + 70500797 70500837 41 TCCCCGCCAGGCGTGTGGGTCTGCAGCACCGACATGCTGCT TCCCCGCCAGGCGTGTGGGTCCGCAGCACCGACATGCTGCT < 41bp 0.729165199266816 0.471264407427915 0.5047545 0.3312197 prediction 0.458330398533632 Functional Loss - FUK ENSG00000157353 CDS Human protein_coding chr16:70500817 chr16:70500818 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_75613 0 0 1 0 2 FUK chr16:70500857 5'GT 70500857 Upstream 40bp
chr1 241953963 241953963 1 + G A UCEC 241953960 + 241953940 241953980 41 CCAAGGCCTTTGAAGTGGAACAGGATTTCAAGTTTTTCAAG CCAAGGCCTTTGAAGTGGAACAGAATTTCAAGTTTTTCAAG < 41bp 0.744383219494086 0.515232691956399 0.15129009 0.0701592 prediction 0.458301055075375 Functional Loss - WDR64 ENSG00000162843 CDS Human protein_coding chr1:241953960 chr1:241953963 nonsynonymous SNV 0.849 1 24 hm5C_associated_SNPs_75619 0 0 0 0 2 WDR64 chr1:241953893 3'AG 241953893 Downstream 71bp
chr1 241953963 241953963 1 + G A UCEC 241953960 + 241953940 241953980 41 CCAAGGCCTTTGAAGTGGAACAGGATTTCAAGTTTTTCAAG CCAAGGCCTTTGAAGTGGAACAGAATTTCAAGTTTTTCAAG < 41bp 0.744383219494086 0.515232691956399 0.15129009 0.0701592 prediction 0.458301055075375 Functional Loss - WDR64 ENSG00000162843 CDS Human protein_coding chr1:241953960 chr1:241953963 nonsynonymous SNV 0.849 1 24 hm5C_associated_SNPs_75619 0 0 0 0 2 WDR64 chr1:241953998 5'GT 241953998 Upstream 36bp
chr17 77708871 77708871 1 + G A UCEC 77708868 + 77708848 77708888 41 AGGGCTGGCTCCTTCTTCTACCCGGGCGGGAACGTCACCTA AGGGCTGGCTCCTTCTTCTACCCAGGCGGGAACGTCACCTA < 41bp 0.783140866566519 0.553991740461167 0.92102116 0.5039261 prediction 0.458298252210704 Functional Loss - ENPP7 ENSG00000182156 CDS Human protein_coding chr17:77708868 chr17:77708871 synonymous SNV . 0 24 hm5C_associated_SNPs_75620 0 0 0 0 1 ENPP7 chr17:77708842 3'AG 77708842 Downstream 30bp
chr3 122842988 122842988 1 + A C BRCA 122842987 + 122842967 122843007 41 TACAGCGTGCGCGGCTTCCCCACCATCTGCTATTTTGAGTA TACAGCGTGCGCGGCTTCCCCCCCATCTGCTATTTTGAGTA < 41bp 0.810664923838373 0.581516958398587 0.23416457 0.100320816 prediction 0.45829593087957 Functional Loss - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122842987 chr3:122842988 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_75622 0 0 1 1 2 PDIA5 chr3:122842913 3'AG 122842913 Downstream 76bp
chr3 122842988 122842988 1 + A C BRCA 122842987 + 122842967 122843007 41 TACAGCGTGCGCGGCTTCCCCACCATCTGCTATTTTGAGTA TACAGCGTGCGCGGCTTCCCCCCCATCTGCTATTTTGAGTA < 41bp 0.810664923838373 0.581516958398587 0.23416457 0.100320816 prediction 0.45829593087957 Functional Loss - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122842987 chr3:122842988 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_75622 0 0 1 1 2 PDIA5 chr3:122843004 5'GT 122843004 Upstream 17bp
chr9 71098826 71098826 1 + G A CESC 71098823 + 71098803 71098843 41 CCCAAGACGACATATTATATCATGAGGGACCTGGAGGCCCT CCCAAGACGACATATTATATCATAAGGGACCTGGAGGCCCT < 41bp 0.739034962709687 0.509891535620859 0.5760859 0.23190403 prediction 0.458286854177655 Functional Loss - PGM5 ENSG00000154330 CDS Human protein_coding chr9:71098823 chr9:71098826 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_75624 0 0 0 0 1 PGM5 chr9:71098781 3'AG 71098781 Downstream 46bp
chr6 109274550 109274550 1 + G A TGCT 109274547 + 109274527 109274567 41 ATAGTGGGCCTGCTCCTGACCACGCTGGGTGAGAACCGCAG ATAGTGGGCCTGCTCCTGACCACACTGGGTGAGAACCGCAG < 41bp 0.729142282191672 0.486747983253847 0.2772804 0.2323395 prediction 0.458284564383345 Functional Loss - ARMC2 ENSG00000118690 CDS Human protein_coding chr6:109274547 chr6:109274550 synonymous SNV . 0 24 hm5C_associated_SNPs_75625 0 0 0 0 1 ARMC2 chr6:109274554 5'GT 109274554 Upstream 5bp
chr6 153073419 153073419 1 + G T LUSC 153073417 + 153073397 153073437 41 TACAGGGCACCTTCTGCTCTCAGGTAAGTTCCCTTTCAATT TACAGGGCACCTTCTGCTCTCATGTAAGTTCCCTTTCAATT < 41bp 0.729141659130728 0.390223212053915 0.38761488 0.04449132 prediction 0.458283318261457 Functional Loss - VIP ENSG00000146469 CDS Human protein_coding chr6:153073417 chr6:153073419 nonsynonymous SNV 0.270 3 23 hm5C_associated_SNPs_75627 0 0 0 0 1 VIP chr6:153073419 5'GT 153073419 Upstream 1bp
chrX 119500389 119500389 1 + G A LUAD 119500386 + 119500366 119500406 41 TGTCACTGTTCCAGGATGATCCGGATGAAGCGAACCAGAAC TGTCACTGTTCCAGGATGATCCGAATGAAGCGAACCAGAAC < 41bp 0.729140097253947 0.49788936157405 0.88752294 0.4691185 prediction 0.458280194507895 Functional Loss - ATP1B4 ENSG00000101892 CDS Human protein_coding chrX:119500386 chrX:119500389 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_75628 0 0 0 0 1 ATP1B4 chrX:119500380 3'AG 119500380 Downstream 10bp
chr4 20618763 20618763 1 + G A SKCM 20618760 + 20618740 20618780 41 CAGGCTTCACCTGCGAGTGCCAGGAAGGATGGATGGGGCCC CAGGCTTCACCTGCGAGTGCCAGAAAGGATGGATGGGGCCC < 41bp 0.745982452412149 0.516850790331892 0.8469233 0.52969515 prediction 0.458263324160514 Functional Loss - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20618760 chr4:20618763 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_75630 0 0 0 0 1 SLIT2 chr4:20618821 5'GT 20618821 Upstream 59bp
chr1 6279359 6279359 1 + G A LUAD 6279356 + 6279336 6279376 41 TCAGAGCCTAAAGGAAACAGCTGGGCTCCGAACGGCCTCTC TCAGAGCCTAAAGGAAACAGCTGAGCTCCGAACGGCCTCTC < 41bp 0.767320156336361 0.538190746116951 0.38561457 0.21835491 prediction 0.45825882043882 Functional Loss - RNF207 ENSG00000158286 CDS Human protein_coding chr1:6279356 chr1:6279359 stopgain 0.072 0 24 hm5C_associated_SNPs_75632 0 0 1 0 1 RNF207 chr1:6279296 3'AG 6279296 Downstream 64bp
chr16 27720232 27720232 1 + G A BLCA 27720229 + 27720209 27720249 41 GAGCTGGGCCGCCTCGTCAACAGGAACTTAGCTGTGAGTGG GAGCTGGGCCGCCTCGTCAACAGAAACTTAGCTGTGAGTGG < 41bp 0.779578684474485 0.550449920156428 0.8926996 0.62377757 prediction 0.458257528636114 Functional Loss - KIAA0556 ENSG00000047578 CDS Human other chr16:27720229 chr16:27720232 synonymous SNV . 0 24 hm5C_associated_SNPs_75633 0 0 1 0 1 KIAA0556 chr16:27720241 5'GT 27720241 Upstream 10bp
chr19 36244981 36244981 1 + G A LUAD 36244978 + 36244958 36244998 41 AGCTGCCGCCACCCACACCCCCGGGGCCACCCGGAGATGCC AGCTGCCGCCACCCACACCCCCGAGGCCACCCGGAGATGCC < 41bp 0.729124645784305 0.479240237903032 0.1692406 0.019150168 prediction 0.458249291568611 Functional Loss - LIN37 ENSG00000267796 CDS Human protein_coding chr19:36244978 chr19:36244981 nonsynonymous SNV 0.356 1 24 hm5C_associated_SNPs_75636 0 0 1 0 2 LIN37 chr19:36244918 3'AG 36244918 Downstream 64bp
chr19 36244981 36244981 1 + G A LUAD 36244978 + 36244958 36244998 41 AGCTGCCGCCACCCACACCCCCGGGGCCACCCGGAGATGCC AGCTGCCGCCACCCACACCCCCGAGGCCACCCGGAGATGCC < 41bp 0.729124645784305 0.479240237903032 0.1692406 0.019150168 prediction 0.458249291568611 Functional Loss - LIN37 ENSG00000267796 CDS Human protein_coding chr19:36244978 chr19:36244981 nonsynonymous SNV 0.356 1 24 hm5C_associated_SNPs_75636 0 0 1 0 2 LIN37 chr19:36245058 5'GT 36245058 Upstream 78bp
chr1 158813101 158813101 1 + C T SKCM 158813099 + 158813079 158813119 41 AATTAAAACACAAGAAAAAGCTCCAGTGAAAAAAATAAACC AATTAAAACACAAGAAAAAGCTTCAGTGAAAAAAATAAACC < 41bp 0.835149507290883 0.606028774570103 0.8838434 0.13526988 prediction 0.458241465441561 Functional Loss - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813099 chr1:158813101 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_75638 0 0 0 0 1 MNDA chr1:158813069 3'AG 158813069 Downstream 33bp
chr20 3557593 3557593 1 + G A ESCA 3557590 + 3557570 3557610 41 CCAGCTGCAGGAGCTGTGCCCTGGACCAGAACTGCCAGTGG CCAGCTGCAGGAGCTGTGCCCTGAACCAGAACTGCCAGTGG < 41bp 0.766092377048579 0.536972707930661 0.62036836 0.3902284 prediction 0.458239338235835 Functional Loss - ATRN ENSG00000088812 CDS Human protein_coding chr20:3557590 chr20:3557593 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_75639 0 0 1 0 2 ATRN chr20:3557506 3'AG 3557506 Downstream 88bp
chr20 3557593 3557593 1 + G A ESCA 3557590 + 3557570 3557610 41 CCAGCTGCAGGAGCTGTGCCCTGGACCAGAACTGCCAGTGG CCAGCTGCAGGAGCTGTGCCCTGAACCAGAACTGCCAGTGG < 41bp 0.766092377048579 0.536972707930661 0.62036836 0.3902284 prediction 0.458239338235835 Functional Loss - ATRN ENSG00000088812 CDS Human protein_coding chr20:3557590 chr20:3557593 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_75639 0 0 1 0 2 ATRN chr20:3557644 5'GT 3557644 Upstream 52bp
chr19 13189483 13189483 1 + C T BLCA 13189481 + 13189461 13189501 41 CTTCTGCAGTGCCCTCTCCTCTCAGGGCAGCTCCCCGCGCA CTTCTGCAGTGCCCTCTCCTCTTAGGGCAGCTCCCCGCGCA < 41bp 0.838215310257861 0.609098824355697 0.60575724 0.37691328 prediction 0.458232971804327 Functional Loss - NFIX ENSG00000008441 CDS Human protein_coding chr19:13189481 chr19:13189483 stopgain 1.000 0 23 hm5C_associated_SNPs_75641 0 0 1 0 2 NFIX chr19:13189427 3'AG 13189427 Downstream 57bp
chr19 13189483 13189483 1 + C T BLCA 13189481 + 13189461 13189501 41 CTTCTGCAGTGCCCTCTCCTCTCAGGGCAGCTCCCCGCGCA CTTCTGCAGTGCCCTCTCCTCTTAGGGCAGCTCCCCGCGCA < 41bp 0.838215310257861 0.609098824355697 0.60575724 0.37691328 prediction 0.458232971804327 Functional Loss - NFIX ENSG00000008441 CDS Human protein_coding chr19:13189481 chr19:13189483 stopgain 1.000 0 23 hm5C_associated_SNPs_75641 0 0 1 0 2 NFIX chr19:13189549 5'GT 13189549 Upstream 67bp
chr10 93719804 93719804 1 + G T UCEC 93719802 + 93719782 93719822 41 TTTAAAACACATGAACGAAACAGGAGTTCATAAGACTGTGG TTTAAAACACATGAACGAAACATGAGTTCATAAGACTGTGG < 41bp 0.729113821322714 0.403261255542994 0.32508948 0.08899602 prediction 0.458227642645427 Functional Loss - BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93719802 chr10:93719804 stopgain 1.000 1 23 hm5C_associated_SNPs_75646 0 0 1 0 1 BTAF1 chr10:93719735 3'AG 93719735 Downstream 70bp
chr1 17266531 17266531 1 + A C SKCM 17266530 + 17266510 17266550 41 CCGACGGCGCCATGCAGGCCCACGAGGACGCCCAGCGCGAG CCGACGGCGCCATGCAGGCCCCCGAGGACGCCCAGCGCGAG < 41bp 0.79535474569327 0.566242192836815 0.7562836 0.4274621 prediction 0.458225105712911 Functional Loss - CROCC ENSG00000058453 CDS Human protein_coding chr1:17266530 chr1:17266531 nonsynonymous SNV 0.394 0 22 hm5C_associated_SNPs_75647 0 0 0 0 1 CROCC chr1:17266588 5'GT 17266588 Upstream 58bp
chr14 23072983 23072983 1 + G A LUSC 23072980 + 23072960 23073000 41 GTTCTTCGAGTAGCTGGGCCCTGGGGTGAGTAGCCTGTAGT GTTCTTCGAGTAGCTGGGCCCTGAGGTGAGTAGCCTGTAGT < 41bp 0.762216181891997 0.533108711739641 0.8863398 0.31510708 prediction 0.458214940304712 Functional Loss - ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23072980 chr14:23072983 stopgain 1.000 1 24 hm5C_associated_SNPs_75649 0 0 1 0 1 ABHD4 chr14:23072984 5'GT 23072984 Upstream 2bp
chr14 70442476 70442476 1 + G T LUAD 70442474 + 70442454 70442494 41 GGTACTGCTGGTGTGTCACCCCGGATGGGAAGCCCATCAGT GGTACTGCTGGTGTGTCACCCCTGATGGGAAGCCCATCAGT < 41bp 0.729106382470353 0.375930326720832 0.70831406 0.25501674 prediction 0.458212764940707 Functional Loss - SMOC1 ENSG00000198732 CDS Human protein_coding chr14:70442474 chr14:70442476 synonymous SNV . 0 23 hm5C_associated_SNPs_75650 0 0 1 0 2 SMOC1 chr14:70442432 3'AG 70442432 Downstream 45bp
chr14 70442476 70442476 1 + G T LUAD 70442474 + 70442454 70442494 41 GGTACTGCTGGTGTGTCACCCCGGATGGGAAGCCCATCAGT GGTACTGCTGGTGTGTCACCCCTGATGGGAAGCCCATCAGT < 41bp 0.729106382470353 0.375930326720832 0.70831406 0.25501674 prediction 0.458212764940707 Functional Loss - SMOC1 ENSG00000198732 CDS Human protein_coding chr14:70442474 chr14:70442476 synonymous SNV . 0 23 hm5C_associated_SNPs_75650 0 0 1 0 2 SMOC1 chr14:70442531 5'GT 70442531 Upstream 56bp
chr14 70442477 70442477 1 + G A UCEC 70442474 + 70442454 70442494 41 GGTACTGCTGGTGTGTCACCCCGGATGGGAAGCCCATCAGT GGTACTGCTGGTGTGTCACCCCGAATGGGAAGCCCATCAGT < 41bp 0.729106382470353 0.478982362110383 0.70831406 0.24940583 prediction 0.458212764940707 Functional Loss - SMOC1 ENSG00000198732 CDS Human protein_coding chr14:70442474 chr14:70442477 nonsynonymous SNV 0.977 2 24 hm5C_associated_SNPs_75651 0 0 1 0 2 SMOC1 chr14:70442432 3'AG 70442432 Downstream 46bp
chr14 70442477 70442477 1 + G A UCEC 70442474 + 70442454 70442494 41 GGTACTGCTGGTGTGTCACCCCGGATGGGAAGCCCATCAGT GGTACTGCTGGTGTGTCACCCCGAATGGGAAGCCCATCAGT < 41bp 0.729106382470353 0.478982362110383 0.70831406 0.24940583 prediction 0.458212764940707 Functional Loss - SMOC1 ENSG00000198732 CDS Human protein_coding chr14:70442474 chr14:70442477 nonsynonymous SNV 0.977 2 24 hm5C_associated_SNPs_75651 0 0 1 0 2 SMOC1 chr14:70442531 5'GT 70442531 Upstream 55bp
chr4 142150788 142150788 1 + G T HNSC 142150785 + 142150765 142150805 41 GTAGGAAATGTCTCAGTACACATGCTTGTGCCTGCCCTCTT GTAGGAAATGTCTCAGTACACATTCTTGTGCCTGCCCTCTT < 41bp 0.729104538469436 0.335489335252728 0.15161377 0.035102785 prediction 0.458209076938872 Functional Loss - ZNF330 ENSG00000109445 CDS Human protein_coding chr4:142150785 chr4:142150788 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_75653 0 0 1 0 1 ZNF330 chr4:142150851 5'GT 142150851 Upstream 64bp
chr16 310063 310063 1 + G C CESC 310059 + 310039 310079 41 GTGGCCCAAGACGTGGCCCTCGTGGAGTGTGCTGTGCCCCA GTGGCCCAAGACGTGGCCCTCGTGCAGTGTGCTGTGCCCCA < 41bp 0.729100958241563 0.42563178470942 0.9040233 0.52027386 prediction 0.458201916483127 Functional Loss - FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:310059 chr16:310063 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_75654 0 0 1 0 2 FAM234A chr16:309968 3'AG 309968 Downstream 96bp
chr16 310063 310063 1 + G C CESC 310059 + 310039 310079 41 GTGGCCCAAGACGTGGCCCTCGTGGAGTGTGCTGTGCCCCA GTGGCCCAAGACGTGGCCCTCGTGCAGTGTGCTGTGCCCCA < 41bp 0.729100958241563 0.42563178470942 0.9040233 0.52027386 prediction 0.458201916483127 Functional Loss - FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:310059 chr16:310063 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_75654 0 0 1 0 2 FAM234A chr16:310159 5'GT 310159 Upstream 97bp
chr19 14162734 14162734 1 + G A UCEC 14162731 + 14162711 14162751 41 AAAGTGCTGCCCCGCTGGGTCTGGGAGAAAGTTCCTGATCC AAAGTGCTGCCCCGCTGGGTCTGAGAGAAAGTTCCTGATCC < 41bp 0.791644423511951 0.562544924541285 0.5857561 0.16927016 prediction 0.458198997941331 Functional Loss - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14162731 chr19:14162734 stopgain 0.990 0 24 hm5C_associated_SNPs_75656 0 0 1 0 2 IL27RA chr19:14162692 3'AG 14162692 Downstream 43bp
chr19 14162734 14162734 1 + G A UCEC 14162731 + 14162711 14162751 41 AAAGTGCTGCCCCGCTGGGTCTGGGAGAAAGTTCCTGATCC AAAGTGCTGCCCCGCTGGGTCTGAGAGAAAGTTCCTGATCC < 41bp 0.791644423511951 0.562544924541285 0.5857561 0.16927016 prediction 0.458198997941331 Functional Loss - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14162731 chr19:14162734 stopgain 0.990 0 24 hm5C_associated_SNPs_75656 0 0 1 0 2 IL27RA chr19:14162785 5'GT 14162785 Upstream 52bp
chr14 67768707 67768707 1 + G A BLCA 67768704 + 67768684 67768724 41 AACAGGCACTTTTACTGGCCCACGATAAGGTTGCTGAGCAG AACAGGCACTTTTACTGGCCCACAATAAGGTTGCTGAGCAG < 41bp 0.729097835547261 0.496911266813004 0.15931648 0.05295372 prediction 0.458195671094523 Functional Loss - MPP5 ENSG00000072415 CDS Human protein_coding chr14:67768704 chr14:67768707 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_75657 0 0 1 0 1 MPP5 chr14:67768689 3'AG 67768689 Downstream 19bp
chr20 47628620 47628620 1 + G A STAD 47628617 + 47628597 47628637 41 CAAATACGTCTCTGAGAGGCCTCGGGTTCGTTTTTCCCCAC CAAATACGTCTCTGAGAGGCCTCAGGTTCGTTTTTCCCCAC < 41bp 0.740933903693203 0.511837085778862 0.31984586 0.24018136 prediction 0.458193635828682 Functional Loss - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47628617 chr20:47628620 nonsynonymous SNV 0.948 0 24 hm5C_associated_SNPs_75658 0 0 0 0 1 ARFGEF2 chr20:47628621 5'GT 47628621 Upstream 2bp
chr1 205241039 205241039 1 + G A COAD 205241036 + 205241016 205241056 41 GAGGGCGTGGAGAATGCCAACGCGCGGGCGCTGCTGGGCAA GAGGGCGTGGAGAATGCCAACGCACGGGCGCTGCTGGGCAA < 41bp 0.729096203525779 0.49098265440371 0.28521597 0.060505718 prediction 0.458192407051557 Functional Loss - TMCC2 ENSG00000133069 CDS Human protein_coding chr1:205241036 chr1:205241039 synonymous SNV . 0 24 hm5C_associated_SNPs_75660 0 0 0 1 1 TMCC2 chr1:205240941 3'AG 205240941 Downstream 99bp
chr10 104156761 104156761 1 + C T LUSC 104156759 + 104156739 104156779 41 AGTCTGGTGGGCAAGCAATGCTCGGAGCTGGGGATCTGCGC AGTCTGGTGGGCAAGCAATGCTTGGAGCTGGGGATCTGCGC < 41bp 0.834835752455341 0.605744206379356 0.54928786 0.42677552 prediction 0.458183092151971 Functional Loss - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104156759 chr10:104156761 nonsynonymous SNV 0.191 2 23 hm5C_associated_SNPs_75661 0 0 1 0 1 NFKB2 chr10:104156812 5'GT 104156812 Upstream 52bp
chr1 236645657 236645657 1 + A C LUSC 236645656 + 236645636 236645676 41 TAAGTGACTTGCTCAATGATCAGGACTTACTAGACGTGATC TAAGTGACTTGCTCAATGATCCGGACTTACTAGACGTGATC < 41bp 0.809031314682311 0.579941185714657 0.8692391 0.8002099 prediction 0.458180257935309 Functional Loss - EDARADD ENSG00000186197 CDS Human protein_coding chr1:236645656 chr1:236645657 nonsynonymous SNV 0.919 1 22 hm5C_associated_SNPs_75662 0 0 0 0 1 EDARADD chr1:236645567 3'AG 236645567 Downstream 91bp
chr5 150056296 150056296 1 + C T rs57761602 150056294 + 150056274 150056314 41 CGGTGCCATTTGGAGGACCCCTCGTGGGGGGCACTTTTCCC CGGTGCCATTTGGAGGACCCCTTGTGGGGGGCACTTTTCCC < 41bp 0.729087231408474 0.45967697798573 0.28586537 0.25666508 prediction 0.458174462816948 Functional Loss - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150056294 chr5:150056296 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_75664 0 0 0 0 1 MYOZ3 chr5:150056269 3'AG 150056269 Downstream 28bp
chr5 150056297 150056297 1 + G A SARC 150056294 + 150056274 150056314 41 CGGTGCCATTTGGAGGACCCCTCGTGGGGGGCACTTTTCCC CGGTGCCATTTGGAGGACCCCTCATGGGGGGCACTTTTCCC < 41bp 0.729087231408474 0.487580755170831 0.28586537 0.21439293 prediction 0.458174462816948 Functional Loss - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150056294 chr5:150056297 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_75665 0 0 0 0 1 MYOZ3 chr5:150056269 3'AG 150056269 Downstream 29bp
chr1 110587527 110587527 1 + G T UCEC 110587525 + 110587505 110587545 41 TTTATAGGTTACACTCTAGGCAGGTGAGTAAAAGCCGAGTT TTTATAGGTTACACTCTAGGCATGTGAGTAAAAGCCGAGTT < 41bp 0.729086281175447 0.383610929282284 0.8728399 0.41764262 prediction 0.458172562350893 Functional Loss - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110587525 chr1:110587527 nonsynonymous SNV 0.962 1 23 hm5C_associated_SNPs_75667 0 0 0 0 2 STRIP1 chr1:110587462 3'AG 110587462 Downstream 66bp
chr1 110587527 110587527 1 + G T UCEC 110587525 + 110587505 110587545 41 TTTATAGGTTACACTCTAGGCAGGTGAGTAAAAGCCGAGTT TTTATAGGTTACACTCTAGGCATGTGAGTAAAAGCCGAGTT < 41bp 0.729086281175447 0.383610929282284 0.8728399 0.41764262 prediction 0.458172562350893 Functional Loss - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110587525 chr1:110587527 nonsynonymous SNV 0.962 1 23 hm5C_associated_SNPs_75667 0 0 0 0 2 STRIP1 chr1:110587527 5'GT 110587527 Upstream 1bp
chr12 14576892 14576892 1 + C T UCEC 14576890 + 14576870 14576910 41 TCAGAAAAAAGTCTTTAAGGCTCGAAAAACGATGAGAGTGA TCAGAAAAAAGTCTTTAAGGCTTGAAAAACGATGAGAGTGA < 41bp 0.729085321953778 0.444938984247272 0.25775257 0.076954186 prediction 0.458170643907556 Functional Loss - ATF7IP ENSG00000171681 CDS Human protein_coding chr12:14576890 chr12:14576892 stopgain 1.000 1 23 hm5C_associated_SNPs_75668 0 0 1 0 1 ATF7IP chr12:14576843 3'AG 14576843 Downstream 50bp
chr17 45368453 45368453 1 + C T HNSC 45368451 + 45368431 45368471 41 ATGGGACTCAAGATTGGAGACACGGTGAGGTGGGCTGGGCA ATGGGACTCAAGATTGGAGACATGGTGAGGTGGGCTGGGCA < 41bp 0.729084971619328 0.448493226300125 0.12957719 0.23434642 prediction 0.458169943238655 Functional Loss - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45368451 chr17:45368453 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_75669 0 0 0 0 1 ITGB3 chr17:45368454 5'GT 45368454 Upstream 2bp
chr17 45368454 45368454 1 + G A STAD 45368451 + 45368431 45368471 41 ATGGGACTCAAGATTGGAGACACGGTGAGGTGGGCTGGGCA ATGGGACTCAAGATTGGAGACACAGTGAGGTGGGCTGGGCA < 41bp 0.729084971619328 0.484383114224926 0.12957719 0.0585151 prediction 0.458169943238655 Functional Loss - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45368451 chr17:45368454 synonymous SNV . 0 24 hm5C_associated_SNPs_75670 0 0 0 0 1 ITGB3 chr17:45368454 5'GT 45368454 Upstream 1bp
chr8 42019805 42019805 1 + C T UCEC 42019803 + 42019783 42019823 41 ATATTAATTGCCTCAGGAAGCACGAATGTGGGTGACCAGCT ATATTAATTGCCTCAGGAAGCATGAATGTGGGTGACCAGCT < 41bp 0.843975061344966 0.614892538544503 0.13807973 0.12181577 prediction 0.458165045600926 Functional Loss - AP3M2 ENSG00000070718 CDS Human protein_coding chr8:42019803 chr8:42019805 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_75672 0 0 1 0 1 AP3M2 chr8:42019799 3'AG 42019799 Downstream 7bp
chr5 161520902 161520902 1 + C T UCEC 161520899 + 161520879 161520919 41 TAACAAAACATGGGTCTTGACTCCAAAAGTTCCTGAGGGTG TAACAAAACATGGGTCTTGACTCTAAAAGTTCCTGAGGGTG < 41bp 0.747004183848446 0.517923390783787 0.9761803 0.95839536 prediction 0.458161586129319 Functional Loss - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161520899 chr5:161520902 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_75674 0 0 0 0 2 GABRG2 chr5:161520834 3'AG 161520834 Downstream 69bp
chr5 161520902 161520902 1 + C T UCEC 161520899 + 161520879 161520919 41 TAACAAAACATGGGTCTTGACTCCAAAAGTTCCTGAGGGTG TAACAAAACATGGGTCTTGACTCTAAAAGTTCCTGAGGGTG < 41bp 0.747004183848446 0.517923390783787 0.9761803 0.95839536 prediction 0.458161586129319 Functional Loss - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161520899 chr5:161520902 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_75674 0 0 0 0 2 GABRG2 chr5:161520985 5'GT 161520985 Upstream 84bp
chr18 12264310 12264310 1 + T C UCEC 12264309 + 12264289 12264329 41 ATGTGTTGCACACCTAGACTCTGGATGCCCTCGTCATCGCT ATGTGTTGCACACCTAGACTCCGGATGCCCTCGTCATCGCT < 41bp 0.729076086339275 0.492127007528489 0.41196603 0.6780362 prediction 0.45815217267855 Functional Loss - CIDEA ENSG00000176194 CDS Human protein_coding chr18:12264309 chr18:12264310 nonsynonymous SNV 0.837 2 22 hm5C_associated_SNPs_75676 0 0 0 0 1 CIDEA chr18:12264306 3'AG 12264306 Downstream 5bp
chr11 64854497 64854497 1 + C T COAD 64854495 + 64854475 64854515 41 CCCCAGCTTCCCCAGGCCGGCCCGAGCAGCACACAGTGATC CCCCAGCTTCCCCAGGCCGGCCTGAGCAGCACACAGTGATC < 41bp 0.72906900999657 0.464275697174633 0.4743542 0.4468342 prediction 0.45813801999314 Functional Loss - ZFPL1 ENSG00000162300 CDS Human protein_coding chr11:64854495 chr11:64854497 synonymous SNV . 0 23 hm5C_associated_SNPs_75678 0 0 0 0 2 ZFPL1 chr11:64854400 3'AG 64854400 Downstream 98bp
chr11 64854497 64854497 1 + C T COAD 64854495 + 64854475 64854515 41 CCCCAGCTTCCCCAGGCCGGCCCGAGCAGCACACAGTGATC CCCCAGCTTCCCCAGGCCGGCCTGAGCAGCACACAGTGATC < 41bp 0.72906900999657 0.464275697174633 0.4743542 0.4468342 prediction 0.45813801999314 Functional Loss - ZFPL1 ENSG00000162300 CDS Human protein_coding chr11:64854495 chr11:64854497 synonymous SNV . 0 23 hm5C_associated_SNPs_75678 0 0 0 0 2 ZFPL1 chr11:64854546 5'GT 64854546 Upstream 50bp
chr3 45077106 45077106 1 + C T SKCM 45077104 + 45077084 45077124 41 GAGGCCAGCGAGGACTGCATCTCGCGCGGGGGCACCCTGGG GAGGCCAGCGAGGACTGCATCTTGCGCGGGGGCACCCTGGG < 41bp 0.814405175213086 0.585337017015056 0.2194691 0.048799187 prediction 0.45813631639606 Functional Loss - CLEC3B ENSG00000163815 CDS Human protein_coding chr3:45077104 chr3:45077106 nonsynonymous SNV 0.994 0 23 hm5C_associated_SNPs_75679 0 0 0 0 1 CLEC3B chr3:45077016 3'AG 45077016 Downstream 91bp
chr21 36081011 36081011 1 + G A SKCM 36081008 + 36080988 36081028 41 ACTTTTCAAGGTATCCCAAGCTGGGGACCCAACATCCCGAA ACTTTTCAAGGTATCCCAAGCTGAGGACCCAACATCCCGAA < 41bp 0.762969480978603 0.533903299757692 0.55778086 0.2055287 prediction 0.458132362441822 Functional Loss - CLIC6 ENSG00000159212 CDS Human protein_coding chr21:36081008 chr21:36081011 nonsynonymous SNV 0.983 5 24 hm5C_associated_SNPs_75681 0 0 0 0 1 CLIC6 chr21:36080998 3'AG 36080998 Downstream 14bp
chr19 10398280 10398280 1 + G A BRCA 10398277 + 10398257 10398297 41 GGAAATACACTTTGCGCTGCCACGTGACGCAGGTGTTCCCG GGAAATACACTTTGCGCTGCCACATGACGCAGGTGTTCCCG < 41bp 0.770773316703483 0.541712052314164 0.6557569 0.90282714 prediction 0.458122528778639 Functional Loss - ICAM4 ENSG00000105371 CDS Human protein_coding chr19:10398277 chr19:10398280 nonsynonymous SNV 0.955 2 24 hm5C_associated_SNPs_75685 0 0 1 0 1 ICAM4 chr19:10398212 3'AG 10398212 Downstream 69bp
chrX 89177144 89177144 1 + G A STAD 89177141 + 89177121 89177161 41 AGCCCGGTGGAAAAAGACAGCCCGGCGAAGACCCAAAGCCC AGCCCGGTGGAAAAAGACAGCCCAGCGAAGACCCAAAGCCC < 41bp 0.767097701881536 0.538036638839184 0.36117882 0.21901426 prediction 0.458122126084704 Functional Loss - TGIF2LX ENSG00000153779 CDS Human protein_coding chrX:89177141 chrX:89177144 synonymous SNV . 0 24 hm5C_associated_SNPs_75686 0 0 0 0 1 TGIF2LX chrX:89177064 3'AG 89177064 Downstream 81bp
chr18 2885114 2885114 1 + G A SKCM 2885111 + 2885091 2885131 41 CCGCCCCACGCCGGCTCGGCCTCGAAACAGCTTGAAGAAAG CCGCCCCACGCCGGCTCGGCCTCAAAACAGCTTGAAGAAAG < 41bp 0.749245398468571 0.52018445776469 0.7644023 0.042773426 prediction 0.458121881407763 Functional Loss - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2885111 chr18:2885114 nonsynonymous SNV 0.262 0 24 hm5C_associated_SNPs_75688 0 0 0 0 1 EMILIN2 chr18:2885137 5'GT 2885137 Upstream 24bp
chr10 134898352 134898352 1 + G C HNSC 134898348 + 134898328 134898368 41 CTGGGCCCACCTGGCTGCAGCGGGGAGCTGAGCCTCCCTGA CTGGGCCCACCTGGCTGCAGCGGGCAGCTGAGCCTCCCTGA < 41bp 0.864202486676556 0.635145133668762 0.9429358 0.91691947 prediction 0.458114706015588 Functional Loss - ADGRA1-AS1 ENSG00000197177 CDS Human protein_coding chr10:134898348 chr10:134898352 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_75691 0 0 0 0 1 ADGRA1-AS1 chr10:134898313 3'AG 134898313 Downstream 40bp
chr14 20943381 20943381 1 + G A LUSC 20943378 + 20943358 20943398 41 TTGAGACTGTGGCAGAATGTCGTGTGCTGCAGAAGCTGGGA TTGAGACTGTGGCAGAATGTCGTATGCTGCAGAAGCTGGGA < 41bp 0.72905678755173 0.48479919246816 0.8279994 0.5795726 prediction 0.45811357510346 Functional Loss - PNP ENSG00000198805 CDS Human protein_coding chr14:20943378 chr14:20943381 nonsynonymous SNV 0.434 1 24 hm5C_associated_SNPs_75692 0 0 1 0 1 PNP chr14:20943411 5'GT 20943411 Upstream 31bp
chr1 28099877 28099877 1 + G C BLCA 28099873 + 28099853 28099893 41 CGGGGCCCTCGGGGCCCCAGCTCCGGGACTTCAGCAGCATC CGGGGCCCTCGGGGCCCCAGCTCCCGGACTTCAGCAGCATC < 41bp 0.836358656058538 0.607308074620993 0.8445456 0.50527525 prediction 0.458101162875091 Functional Loss - STX12 ENSG00000117758 CDS Human protein_coding chr1:28099873 chr1:28099877 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_75695 0 0 1 0 1 STX12 chr1:28099936 5'GT 28099936 Upstream 60bp
chr17 32597352 32597352 1 + G T LUAD 32597350 + 32597330 32597370 41 TCTGTGTCTGCTGCTCACAGCAGCTGCTTTCAGCCCCCAGG TCTGTGTCTGCTGCTCACAGCATCTGCTTTCAGCCCCCAGG < 41bp 0.729049949729277 0.374073848340773 0.37666142 0.17527714 prediction 0.458099899458554 Functional Loss - CCL7 ENSG00000108688 CDS Human protein_coding chr17:32597350 chr17:32597352 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_75696 0 0 0 0 1 CCL7 chr17:32597385 5'GT 32597385 Upstream 34bp
chr3 47384226 47384226 1 + C T CESC 47384224 + 47384204 47384244 41 TGAAGATGGACAGTGGTGACCTCGATGAGCTCGAATCGCAG TGAAGATGGACAGTGGTGACCTTGATGAGCTCGAATCGCAG < 41bp 0.729049694897136 0.427387812735956 0.7173791 0.11390221 prediction 0.458099389794272 Functional Loss - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47384224 chr3:47384226 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_75697 0 0 1 0 1 KLHL18 chr3:47384209 3'AG 47384209 Downstream 18bp
chr2 197541324 197541324 1 + G T ACC 197541321 + 197541301 197541341 41 ACCAGTGTATCCAGAAAGCACAGGATGCTGAAAAGAGAACA ACCAGTGTATCCAGAAAGCACAGTATGCTGAAAAGAGAACA < 41bp 0.729044191567865 0.345268804154483 0.32060754 0.32845742 prediction 0.45808838313573 Functional Loss - CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541321 chr2:197541324 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_75701 0 0 1 0 1 CCDC150 chr2:197541278 3'AG 197541278 Downstream 47bp
chr17 74536268 74536268 1 + G T SARC 74536265 + 74536245 74536285 41 CTCAGCACCCTGGCCATGCTCTGGCGCCGCCGATTTGCCAA CTCAGCACCCTGGCCATGCTCTGTCGCCGCCGATTTGCCAA < 41bp 0.729041060906098 0.329444583682818 0.31327266 0.022902519 prediction 0.458082121812196 Functional Loss - PRCD ENSG00000214140 CDS Human protein_coding chr17:74536265 chr17:74536268 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_75702 0 0 0 0 1 PRCD chr17:74536297 5'GT 74536297 Upstream 30bp
chr6 44147776 44147776 1 + C T STAD 44147774 + 44147754 44147794 41 CTCAGAGATCTTCACCAACTCACGGGAGGTGAGCAGCCAAC CTCAGAGATCTTCACCAACTCATGGGAGGTGAGCAGCCAAC < 41bp 0.833480704912643 0.604443268036932 0.1769883 0.3900274 prediction 0.458074873751422 Functional Loss - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44147774 chr6:44147776 nonsynonymous SNV 0.186 5 23 hm5C_associated_SNPs_75704 0 0 0 0 1 CAPN11 chr6:44147689 3'AG 44147689 Downstream 88bp
chr19 1084338 1084338 1 + G T rs61741608 1084335 + 1084315 1084355 41 CTGCAGGAGGCGGCGGCGGACGGGTGCAGAGGTGAGTGTGT CTGCAGGAGGCGGCGGCGGACGGTTGCAGAGGTGAGTGTGT < 41bp 0.729032783946824 0.341669930657049 0.90883577 0.88653636 prediction 0.458065567893648 Functional Loss - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1084335 chr19:1084338 synonymous SNV . 0 24 hm5C_associated_SNPs_75705 0 0 0 0 1 ARHGAP45 chr19:1084345 5'GT 1084345 Upstream 8bp
chr16 19592878 19592878 1 + A C UCEC 19592877 + 19592857 19592897 41 AGGAGCTGTTGAACTTGACTCAGCAGGATTACGTGAACCGC AGGAGCTGTTGAACTTGACTCCGCAGGATTACGTGAACCGC < 41bp 0.812027334200467 0.58299699792405 0.5489999 0.2893561 prediction 0.458060672552834 Functional Loss - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19592877 chr16:19592878 nonsynonymous SNV 0.991 4 22 hm5C_associated_SNPs_75708 0 0 1 0 1 C16orf62 chr16:19592975 5'GT 19592975 Upstream 98bp
chr19 57802140 57802140 1 + G A GBM 57802137 + 57802117 57802157 41 TTGCCTGAGGAAGTCTCACTCCAGGAACAGCTGGCACAGGG TTGCCTGAGGAAGTCTCACTCCAAGAACAGCTGGCACAGGG < 41bp 0.756851947014506 0.527830457801746 0.46246475 0.11952096 prediction 0.45804297842552 Functional Loss - ZNF460 ENSG00000197714 CDS Human protein_coding chr19:57802137 chr19:57802140 synonymous SNV . 0 24 hm5C_associated_SNPs_75713 0 0 1 0 1 ZNF460 chr19:57802067 3'AG 57802067 Downstream 74bp
chr15 74625093 74625093 1 + G T LUSC 74625090 + 74625070 74625110 41 AACCTGCCGGTTGAACTTTACTCGGTGCTGCTGGCAGAAAA AACCTGCCGGTTGAACTTTACTCTGTGCTGCTGGCAGAAAA < 41bp 0.729018967130218 0.332250788713381 0.5440611 0.33724922 prediction 0.458037934260435 Functional Loss - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74625090 chr15:74625093 synonymous SNV . 0 24 hm5C_associated_SNPs_75714 0 0 0 0 2 CCDC33 chr15:74625020 3'AG 74625020 Downstream 74bp
chr15 74625093 74625093 1 + G T LUSC 74625090 + 74625070 74625110 41 AACCTGCCGGTTGAACTTTACTCGGTGCTGCTGGCAGAAAA AACCTGCCGGTTGAACTTTACTCTGTGCTGCTGGCAGAAAA < 41bp 0.729018967130218 0.332250788713381 0.5440611 0.33724922 prediction 0.458037934260435 Functional Loss - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74625090 chr15:74625093 synonymous SNV . 0 24 hm5C_associated_SNPs_75714 0 0 0 0 2 CCDC33 chr15:74625186 5'GT 74625186 Upstream 94bp
chr2 71163176 71163176 1 + G A STAD 71163173 + 71163153 71163193 41 AGAACACATGCAGGCGGTCACCCGAAACTACATCACCCACC AGAACACATGCAGGCGGTCACCCAAAACTACATCACCCACC < 41bp 0.763679946511647 0.534662533705796 0.9212529 0.9384486 prediction 0.458034825611701 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71163173 chr2:71163176 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_75715 0 0 0 0 1 ATP6V1B1 chr2:71163202 5'GT 71163202 Upstream 27bp
chr19 42796484 42796484 1 + C T UCEC 42796482 + 42796462 42796502 41 GTGCAGTCAGCGGGCGGGCACGCGCTGCCCCTGGGTACCAG GTGCAGTCAGCGGGCGGGCACGTGCTGCCCCTGGGTACCAG < 41bp 0.729015305106026 0.477415053510404 0.30395705 0.33215022 prediction 0.458030610212053 Functional Loss - CIC ENSG00000079432 CDS Human protein_coding chr19:42796482 chr19:42796484 nonsynonymous SNV 0.883 2 23 hm5C_associated_SNPs_75717 0 0 1 0 1 CIC chr19:42796452 3'AG 42796452 Downstream 33bp
chr13 88328551 88328551 1 + C T ESCA 88328549 + 88328529 88328569 41 CCGCAGACGCCTTTGAGCACCACGGGGTATTTACACACCAC CCGCAGACGCCTTTGAGCACCATGGGGTATTTACACACCAC < 41bp 0.812138382445707 0.583125500047977 0.36892584 0.47363937 prediction 0.458025764795459 Functional Loss - SLITRK5 ENSG00000165300 CDS Human protein_coding chr13:88328549 chr13:88328551 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_75719 0 0 1 0 1 SLITRK5 chr13:88328462 3'AG 88328462 Downstream 90bp
chr17 19452969 19452969 1 + G A BRCA 19452966 + 19452946 19452986 41 AGGCTTACCCAGACCTATGTCACGATCTTCATTCCAGCTCT AGGCTTACCCAGACCTATGTCACAATCTTCATTCCAGCTCT < 41bp 0.759634731354659 0.530625973935923 0.25975543 0.09208068 prediction 0.458017514837471 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19452966 chr17:19452969 nonsynonymous SNV 0.913 0 24 hm5C_associated_SNPs_75721 0 0 1 1 2 SLC47A1 chr17:19452948 3'AG 19452948 Downstream 22bp
chr17 19452969 19452969 1 + G A BRCA 19452966 + 19452946 19452986 41 AGGCTTACCCAGACCTATGTCACGATCTTCATTCCAGCTCT AGGCTTACCCAGACCTATGTCACAATCTTCATTCCAGCTCT < 41bp 0.759634731354659 0.530625973935923 0.25975543 0.09208068 prediction 0.458017514837471 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19452966 chr17:19452969 nonsynonymous SNV 0.913 0 24 hm5C_associated_SNPs_75721 0 0 1 1 2 SLC47A1 chr17:19452990 5'GT 19452990 Upstream 22bp
chr12 54675192 54675192 1 + T C PRAD 54675191 + 54675171 54675211 41 CTCCTAAAGAGCCCGAACAGCTGAGGAAGCTCTTCATTGGA CTCCTAAAGAGCCCGAACAGCCGAGGAAGCTCTTCATTGGA < 41bp 0.72900813313012 0.489079650068321 0.6028619 0.25943696 prediction 0.458016266260239 Functional Loss - HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675191 chr12:54675192 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_75722 0 0 0 0 2 HNRNPA1 chr12:54675170 3'AG 54675170 Downstream 23bp
chr12 54675192 54675192 1 + T C PRAD 54675191 + 54675171 54675211 41 CTCCTAAAGAGCCCGAACAGCTGAGGAAGCTCTTCATTGGA CTCCTAAAGAGCCCGAACAGCCGAGGAAGCTCTTCATTGGA < 41bp 0.72900813313012 0.489079650068321 0.6028619 0.25943696 prediction 0.458016266260239 Functional Loss - HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675191 chr12:54675192 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_75722 0 0 0 0 2 HNRNPA1 chr12:54675286 5'GT 54675286 Upstream 95bp
chr1 75609565 75609565 1 + G T LUAD 75609563 + 75609543 75609583 41 TGTGGAAGGTGCCCTCCTCACAGAGCAAGATGTTAACCATC TGTGGAAGGTGCCCTCCTCACATAGCAAGATGTTAACCATC < 41bp 0.729007767984842 0.374700778347771 0.88791853 0.3531544 prediction 0.458015535969684 Functional Loss - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75609563 chr1:75609565 stopgain 0.997 1 23 hm5C_associated_SNPs_75723 0 0 0 0 2 LHX8 chr1:75609530 3'AG 75609530 Downstream 36bp
chr1 75609565 75609565 1 + G T LUAD 75609563 + 75609543 75609583 41 TGTGGAAGGTGCCCTCCTCACAGAGCAAGATGTTAACCATC TGTGGAAGGTGCCCTCCTCACATAGCAAGATGTTAACCATC < 41bp 0.729007767984842 0.374700778347771 0.88791853 0.3531544 prediction 0.458015535969684 Functional Loss - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75609563 chr1:75609565 stopgain 0.997 1 23 hm5C_associated_SNPs_75723 0 0 0 0 2 LHX8 chr1:75609633 5'GT 75609633 Upstream 69bp
chr1 7837252 7837252 1 + G A SKCM 7837249 + 7837229 7837269 41 ATAATGCGAGTTAACGTGGACAAGGTTCTGGAAAGAGACCA ATAATGCGAGTTAACGTGGACAAAGTTCTGGAAAGAGACCA < 41bp 0.730857371198897 0.501850028885028 0.0912275 0.049110293 prediction 0.458014684627738 Functional Loss - VAMP3 ENSG00000049245 CDS Human protein_coding chr1:7837249 chr1:7837252 synonymous SNV . 0 24 hm5C_associated_SNPs_75724 0 0 1 0 1 VAMP3 chr1:7837220 3'AG 7837220 Downstream 33bp
chr2 106497794 106497794 1 + G A PRAD 106497791 + 106497771 106497811 41 TGTGTCTCCACAGGCCTCGGCAAGACGCGCAGGAAGACCAG TGTGTCTCCACAGGCCTCGGCAAAACGCGCAGGAAGACCAG < 41bp 0.775974902345083 0.546969016245571 0.8052776 0.705369 prediction 0.458011772199025 Functional Loss - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106497791 chr2:106497794 synonymous SNV . 0 24 hm5C_associated_SNPs_75725 0 0 0 0 1 NCK2 chr2:106497784 3'AG 106497784 Downstream 11bp
chr5 128302291 128302291 1 + G T GBM 128302289 + 128302269 128302309 41 TGCATCCGCGCCTGTGGGCCCAGAGCCCTAGTGGTGGGCGC TGCATCCGCGCCTGTGGGCCCATAGCCCTAGTGGTGGGCGC < 41bp 0.72900551532528 0.365119494557586 0.4302153 0.19849885 prediction 0.458011030650561 Functional Loss - SLC27A6 ENSG00000113396 CDS Human protein_coding chr5:128302289 chr5:128302291 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_75726 0 0 0 0 1 SLC27A6 chr5:128302311 5'GT 128302311 Upstream 21bp
chr11 15170770 15170770 1 + G A KIRC 15170767 + 15170747 15170787 41 CCTGGACTCCGTCACCCTGCCGGGTCAGCGGTAAGTCCTAC CCTGGACTCCGTCACCCTGCCGGATCAGCGGTAAGTCCTAC < 41bp 0.767306483221158 0.538303250070945 0.8661011 0.46504867 prediction 0.458006466300426 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15170767 chr11:15170770 nonsynonymous SNV 0.102 0 24 hm5C_associated_SNPs_75729 0 0 0 0 2 INSC chr11:15170676 3'AG 15170676 Downstream 95bp
chr11 15170770 15170770 1 + G A KIRC 15170767 + 15170747 15170787 41 CCTGGACTCCGTCACCCTGCCGGGTCAGCGGTAAGTCCTAC CCTGGACTCCGTCACCCTGCCGGATCAGCGGTAAGTCCTAC < 41bp 0.767306483221158 0.538303250070945 0.8661011 0.46504867 prediction 0.458006466300426 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15170767 chr11:15170770 nonsynonymous SNV 0.102 0 24 hm5C_associated_SNPs_75729 0 0 0 0 2 INSC chr11:15170776 5'GT 15170776 Upstream 7bp
chr17 48615544 48615544 1 + G A HNSC 48615541 + 48615521 48615561 41 AGCTGGCCCTCGCCATGAGCCGTGAGGAGGCAGAGAAGGTG AGCTGGCCCTCGCCATGAGCCGTAAGGAGGCAGAGAAGGTG < 41bp 0.768106467205004 0.539109209648705 0.2591171 0.136257 prediction 0.457994515112597 Functional Loss - EPN3 ENSG00000049283 CDS Human protein_coding chr17:48615541 chr17:48615544 nonsynonymous SNV 0.822 4 24 hm5C_associated_SNPs_75733 0 0 0 0 1 EPN3 chr17:48615558 5'GT 48615558 Upstream 15bp
chr18 21033427 21033427 1 + G C UCEC 21033426 + 21033406 21033446 41 GGATCTGGTAGGAGTGGCATCGCCTGAGCCCGGGACGGCAG GGATCTGGTAGGAGTGGCATCCCCTGAGCCCGGGACGGCAG < 41bp 0.866445411311065 0.637452274490497 0.28783086 0.06674293 prediction 0.457986273641135 Functional Loss - RIOK3 ENSG00000101782 CDS Human protein_coding chr18:21033426 chr18:21033427 synonymous SNV . 0 22 hm5C_associated_SNPs_75736 0 0 1 0 1 RIOK3 chr18:21033466 5'GT 21033466 Upstream 40bp
chr2 233404755 233404755 1 + T C UCEC 233404754 + 233404734 233404774 41 CTCGCAGACCTGATGCAAAACTACGACCCCAACCTGCGGCC CTCGCAGACCTGATGCAAAACCACGACCCCAACCTGCGGCC < 41bp 0.728988404585624 0.477915095657053 0.13047287 0.12495479 prediction 0.457976809171249 Functional Loss - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233404754 chr2:233404755 nonsynonymous SNV 0.130 4 22 hm5C_associated_SNPs_75740 0 0 0 0 2 CHRNG chr2:233404702 3'AG 233404702 Downstream 54bp
chr2 233404755 233404755 1 + T C UCEC 233404754 + 233404734 233404774 41 CTCGCAGACCTGATGCAAAACTACGACCCCAACCTGCGGCC CTCGCAGACCTGATGCAAAACCACGACCCCAACCTGCGGCC < 41bp 0.728988404585624 0.477915095657053 0.13047287 0.12495479 prediction 0.457976809171249 Functional Loss - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233404754 chr2:233404755 nonsynonymous SNV 0.130 4 22 hm5C_associated_SNPs_75740 0 0 0 0 2 CHRNG chr2:233404841 5'GT 233404841 Upstream 87bp
chr3 38354921 38354921 1 + G A COAD 38354918 + 38354898 38354938 41 AGGTGACTCGGGCCTCTGTCCTGGACTTCTGTAAGAATAGG AGGTGACTCGGGCCTCTGTCCTGAACTTCTGTAAGAATAGG < 41bp 0.771255834208385 0.54227482820582 0.788638 0.22111958 prediction 0.457962012005129 Functional Loss - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38354918 chr3:38354921 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_75743 0 0 0 1 2 SLC22A14 chr3:38354879 3'AG 38354879 Downstream 43bp
chr3 38354921 38354921 1 + G A COAD 38354918 + 38354898 38354938 41 AGGTGACTCGGGCCTCTGTCCTGGACTTCTGTAAGAATAGG AGGTGACTCGGGCCTCTGTCCTGAACTTCTGTAAGAATAGG < 41bp 0.771255834208385 0.54227482820582 0.788638 0.22111958 prediction 0.457962012005129 Functional Loss - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38354918 chr3:38354921 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_75743 0 0 0 1 2 SLC22A14 chr3:38354976 5'GT 38354976 Upstream 56bp
chr6 167711546 167711546 1 + G A SKCM 167711543 + 167711523 167711563 41 AGCAGCTGGTCTACACCCTCCTGGGCATCTACACTGGTACG AGCAGCTGGTCTACACCCTCCTGAGCATCTACACTGGTACG < 41bp 0.728977650996179 0.47500684623778 0.33035985 0.09397966 prediction 0.457955301992358 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167711543 chr6:167711546 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_75744 0 0 1 0 1 UNC93A chr6:167711558 5'GT 167711558 Upstream 13bp
chr2 157407168 157407168 1 + C T STAD 157407166 + 157407146 157407186 41 ATCAATGCCACGGGACCTTTCACGGACTCTGTGCGCAAAAT ATCAATGCCACGGGACCTTTCATGGACTCTGTGCGCAAAAT < 41bp 0.728977638708306 0.44218271004683 0.5107824 0.56102836 prediction 0.457955277416612 Functional Loss - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407166 chr2:157407168 nonsynonymous SNV 0.993 3 23 hm5C_associated_SNPs_75745 0 0 1 1 2 GPD2 chr2:157407114 3'AG 157407114 Downstream 55bp
chr2 157407168 157407168 1 + C T STAD 157407166 + 157407146 157407186 41 ATCAATGCCACGGGACCTTTCACGGACTCTGTGCGCAAAAT ATCAATGCCACGGGACCTTTCATGGACTCTGTGCGCAAAAT < 41bp 0.728977638708306 0.44218271004683 0.5107824 0.56102836 prediction 0.457955277416612 Functional Loss - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407166 chr2:157407168 nonsynonymous SNV 0.993 3 23 hm5C_associated_SNPs_75745 0 0 1 1 2 GPD2 chr2:157407258 5'GT 157407258 Upstream 91bp
chr2 157407169 157407169 1 + G A UCEC 157407166 + 157407146 157407186 41 ATCAATGCCACGGGACCTTTCACGGACTCTGTGCGCAAAAT ATCAATGCCACGGGACCTTTCACAGACTCTGTGCGCAAAAT < 41bp 0.728977638708306 0.487415719926139 0.5107824 0.22045845 prediction 0.457955277416612 Functional Loss - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407166 chr2:157407169 synonymous SNV . 0 24 hm5C_associated_SNPs_75746 0 0 1 0 2 GPD2 chr2:157407114 3'AG 157407114 Downstream 56bp
chr2 157407169 157407169 1 + G A UCEC 157407166 + 157407146 157407186 41 ATCAATGCCACGGGACCTTTCACGGACTCTGTGCGCAAAAT ATCAATGCCACGGGACCTTTCACAGACTCTGTGCGCAAAAT < 41bp 0.728977638708306 0.487415719926139 0.5107824 0.22045845 prediction 0.457955277416612 Functional Loss - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407166 chr2:157407169 synonymous SNV . 0 24 hm5C_associated_SNPs_75746 0 0 1 0 2 GPD2 chr2:157407258 5'GT 157407258 Upstream 90bp
chr7 87564433 87564433 1 + G T LUAD 87564431 + 87564411 87564451 41 ACTGCGCCTCATCTACCGCTCGGGCGGCGAAGACGAAAGTC ACTGCGCCTCATCTACCGCTCGTGCGGCGAAGACGAAAGTC < 41bp 0.728977403624463 0.390814746796716 0.9096067 0.47867408 prediction 0.457954807248926 Functional Loss - ADAM22 ENSG00000008277 CDS Human protein_coding chr7:87564431 chr7:87564433 nonsynonymous SNV 0.286 2 23 hm5C_associated_SNPs_75747 0 0 1 0 3 ADAM22 chr7:87564341 3'AG 87564341 Downstream 93bp
chr7 87564433 87564433 1 + G T LUAD 87564431 + 87564411 87564451 41 ACTGCGCCTCATCTACCGCTCGGGCGGCGAAGACGAAAGTC ACTGCGCCTCATCTACCGCTCGTGCGGCGAAGACGAAAGTC < 41bp 0.728977403624463 0.390814746796716 0.9096067 0.47867408 prediction 0.457954807248926 Functional Loss - ADAM22 ENSG00000008277 CDS Human protein_coding chr7:87564431 chr7:87564433 nonsynonymous SNV 0.286 2 23 hm5C_associated_SNPs_75747 0 0 1 0 3 ADAM22 chr7:87564344 3'AG 87564344 Downstream 90bp
chr7 87564433 87564433 1 + G T LUAD 87564431 + 87564411 87564451 41 ACTGCGCCTCATCTACCGCTCGGGCGGCGAAGACGAAAGTC ACTGCGCCTCATCTACCGCTCGTGCGGCGAAGACGAAAGTC < 41bp 0.728977403624463 0.390814746796716 0.9096067 0.47867408 prediction 0.457954807248926 Functional Loss - ADAM22 ENSG00000008277 CDS Human protein_coding chr7:87564431 chr7:87564433 nonsynonymous SNV 0.286 2 23 hm5C_associated_SNPs_75747 0 0 1 0 3 ADAM22 chr7:87564501 5'GT 87564501 Upstream 69bp
chr19 42819584 42819584 1 + G A BLCA 42819581 + 42819561 42819601 41 TAAAATGTTCATGGCCGCAGCAGGAGTAGAGGGTGAGGTTC TAAAATGTTCATGGCCGCAGCAGAAGTAGAGGGTGAGGTTC < 41bp 0.775180439541188 0.546204096201046 0.85912097 0.4608213 prediction 0.457952686680284 Functional Loss - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42819581 chr19:42819584 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_75748 0 0 0 0 1 TMEM145 chr19:42819524 3'AG 42819524 Downstream 61bp
chr12 113307841 113307841 1 + G T STAD 113307839 + 113307819 113307859 41 TGGAGACTCCAGCCGGAGCCCAGCAGGTGAGCAAGATGGGC TGGAGACTCCAGCCGGAGCCCATCAGGTGAGCAAGATGGGC < 41bp 0.728975376083783 0.387529262413984 0.8976847 0.6714188 prediction 0.457950752167567 Functional Loss - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113307839 chr12:113307841 nonsynonymous SNV 0.972 0 23 hm5C_associated_SNPs_75749 0 0 0 0 1 RPH3A chr12:113307844 5'GT 113307844 Upstream 4bp
chr1 6679955 6679955 1 + G A CESC 6679952 + 6679932 6679972 41 GACGCGGGTTTCTCAGACATCGCGTCCTCAGTGCCCTTGCC GACGCGGGTTTCTCAGACATCGCATCCTCAGTGCCCTTGCC < 41bp 0.728968781421693 0.48785756753375 0.17755127 0.09367043 prediction 0.457937562843386 Functional Loss - PHF13 ENSG00000116273 CDS Human protein_coding chr1:6679952 chr1:6679955 synonymous SNV . 0 24 hm5C_associated_SNPs_75752 0 0 1 0 1 PHF13 chr1:6679863 3'AG 6679863 Downstream 93bp
chr4 178897012 178897012 1 + G A SKCM 178897009 + 178896989 178897029 41 GGATTGTCATCACTGGGGCACGGGAAAGGGGTTGAGCAAGT GGATTGTCATCACTGGGGCACGGAAAAGGGGTTGAGCAAGT < 41bp 0.752341371676999 0.523374058702675 0.47232908 0.2939742 prediction 0.457934625948647 Functional Loss - LINC01098 ENSG00000231171 CDS Human lincRNA chr4:178897009 chr4:178897012 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_75753 0 0 0 0 2 LINC01098 chr4:178896958 3'AG 178896958 Downstream 55bp
chr4 178897012 178897012 1 + G A SKCM 178897009 + 178896989 178897029 41 GGATTGTCATCACTGGGGCACGGGAAAGGGGTTGAGCAAGT GGATTGTCATCACTGGGGCACGGAAAAGGGGTTGAGCAAGT < 41bp 0.752341371676999 0.523374058702675 0.47232908 0.2939742 prediction 0.457934625948647 Functional Loss - LINC01098 ENSG00000231171 CDS Human lincRNA chr4:178897009 chr4:178897012 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_75753 0 0 0 0 2 LINC01098 chr4:178897097 5'GT 178897097 Upstream 86bp
chr11 60776103 60776103 1 + T C rs61899223 60776102 + 60776082 60776122 41 GGGATCAGTGTGCGATGACACTTGGGACCTGGAGGACGCCC GGGATCAGTGTGCGATGACACCTGGGACCTGGAGGACGCCC < 41bp 0.728966353591467 0.496548740463457 0.10395676 0.19855323 prediction 0.457932707182934 Functional Loss - CD6 ENSG00000013725 CDS Human protein_coding chr11:60776102 chr11:60776103 synonymous SNV . 0 22 hm5C_associated_SNPs_75755 0 0 0 0 1 CD6 chr11:60776006 3'AG 60776006 Downstream 98bp
chr12 67699358 67699358 1 + G T LUAD 67699355 + 67699335 67699375 41 AAAGGCATTGACACTGATTGCTGGGTCACCTTTGAAGATAG AAAGGCATTGACACTGATTGCTGTGTCACCTTTGAAGATAG < 41bp 0.728960869630469 0.344138933348256 0.34033167 0.10939106 prediction 0.457921739260939 Functional Loss - CAND1 ENSG00000111530 CDS Human protein_coding chr12:67699355 chr12:67699358 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_75757 0 0 1 0 1 CAND1 chr12:67699323 3'AG 67699323 Downstream 36bp
chr4 95377418 95377418 1 + C T rs190069211 95377416 + 95377396 95377436 41 CTGGAGTGCAGTGGCGCAATCTCGGCTCACCACAACCTCCA CTGGAGTGCAGTGGCGCAATCTTGGCTCACCACAACCTCCA < 41bp 0.748483842533075 0.519528373274842 0.3754954 0.3850622 prediction 0.457910938516465 Functional Loss - PDLIM5 ENSG00000163110 CDS Human protein_coding chr4:95377416 chr4:95377418 synonymous SNV . 0 23 hm5C_associated_SNPs_75759 0 0 1 0 1 PDLIM5 chr4:95377395 3'AG 95377395 Downstream 24bp
chr12 101777002 101777002 1 + G A rs148427016 101776999 + 101776979 101777019 41 AGGAAGAGGTGAAGGAAGAGCTCGGCAGGCCGGCCACGCTG AGGAAGAGGTGAAGGAAGAGCTCAGCAGGCCGGCCACGCTG < 41bp 0.743116585535672 0.514161279250748 0.5813707 0.36024308 prediction 0.457910612569848 Functional Loss - UTP20 ENSG00000120800 CDS Human protein_coding chr12:101776999 chr12:101777002 nonsynonymous SNV 0.010 0 24 hm5C_associated_SNPs_75761 0 0 1 0 1 UTP20 chr12:101777091 5'GT 101777091 Upstream 90bp
chr19 39200089 39200089 1 + G A BLCA 39200086 + 39200066 39200106 41 TCGAAGTGGCTGAGAAATACCTCGACATCCCCAAGATGCTG TCGAAGTGGCTGAGAAATACCTCAACATCCCCAAGATGCTG < 41bp 0.728954077143483 0.490363374507963 0.24276593 0.1604034 prediction 0.457908154286966 Functional Loss - ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39200086 chr19:39200089 nonsynonymous SNV 0.964 2 24 hm5C_associated_SNPs_75762 0 0 1 0 1 ACTN4 chr19:39200035 3'AG 39200035 Downstream 55bp
chrX 24227093 24227093 1 + C T BLCA 24227091 + 24227071 24227111 41 ACATAGATGAGTCTGCTGGCCTCGGCAGACTGGCTAAACAA ACATAGATGAGTCTGCTGGCCTTGGCAGACTGGCTAAACAA < 41bp 0.72895356151854 0.444805985866523 0.047084153 0.05384752 prediction 0.45790712303708 Functional Loss - ZFX ENSG00000005889 CDS Human protein_coding chrX:24227091 chrX:24227093 synonymous SNV . 0 23 hm5C_associated_SNPs_75763 0 0 1 0 1 ZFX chrX:24227017 3'AG 24227017 Downstream 77bp
chr5 36680557 36680557 1 + C T COAD 36680555 + 36680535 36680575 41 AGAACAATGGCGTGGACAAGCGCGTCACCAGATTCGTGCTC AGAACAATGGCGTGGACAAGCGTGTCACCAGATTCGTGCTC < 41bp 0.833224408980855 0.604271255508446 0.06981459 0.040149003 prediction 0.457906306944818 Functional Loss - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36680555 chr5:36680557 synonymous SNV . 0 23 hm5C_associated_SNPs_75764 0 0 0 0 1 SLC1A3 chr5:36680497 3'AG 36680497 Downstream 61bp
chr7 44079278 44079278 1 + G T rs531700145 44079276 + 44079256 44079296 41 GGACTGCCTGGAGGTGACAGCAGGAAGGACCAGGTTCTGCT GGACTGCCTGGAGGTGACAGCATGAAGGACCAGGTTCTGCT < 41bp 0.728952310413363 0.385416401638604 0.89669585 0.63154376 prediction 0.457904620826726 Functional Loss - LINC00957;RASA4CP ENSG00000235314 ncRNA_exonic Human lincRNA chr7:44079276 chr7:44079278 . . 0 23 hm5C_associated_SNPs_75765 0 0 0 1 1 LINC00957;RASA4CP chr7:44079298 5'GT 44079298 Upstream 21bp
chr2 220098575 220098575 1 + C T SKCM 220098573 + 220098553 220098593 41 ACCCCTGCAAAGGGGGGATCCCCGACTTTGGGATATCCCCC ACCCCTGCAAAGGGGGGATCCCTGACTTTGGGATATCCCCC < 41bp 0.72895225470522 0.444591156971118 0.61515975 0.6083874 prediction 0.457904509410439 Functional Loss - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220098573 chr2:220098575 stopgain 0.999 1 23 hm5C_associated_SNPs_75766 0 0 1 0 1 ANKZF1 chr2:220098665 5'GT 220098665 Upstream 91bp
chr1 111781534 111781534 1 + G T UCEC 111781532 + 111781512 111781552 41 TGGACCCATCACAGAGTCTTCAGGCTTCCTGGCCTATTATG TGGACCCATCACAGAGTCTTCATGCTTCCTGGCCTATTATG < 41bp 0.728951948939516 0.374172374432121 0.9333775 0.41002476 prediction 0.457903897879032 Functional Loss - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111781532 chr1:111781534 nonsynonymous SNV 0.854 3 23 hm5C_associated_SNPs_75767 0 0 0 0 1 CHI3L2 chr1:111781554 5'GT 111781554 Upstream 21bp
chr5 149412102 149412102 1 + G A CESC 149412099 + 149412079 149412119 41 CTACACCAACAGGCACAAACCTCGAATTTGTCCCAGCTGTG CTACACCAACAGGCACAAACCTCAAATTTGTCCCAGCTGTG < 41bp 0.753690599681368 0.524741885063879 0.8092682 0.1802145 prediction 0.457897429234978 Functional Loss - HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149412099 chr5:149412102 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_75768 0 0 0 0 2 HMGXB3 chr5:149412017 3'AG 149412017 Downstream 86bp
chr5 149412102 149412102 1 + G A CESC 149412099 + 149412079 149412119 41 CTACACCAACAGGCACAAACCTCGAATTTGTCCCAGCTGTG CTACACCAACAGGCACAAACCTCAAATTTGTCCCAGCTGTG < 41bp 0.753690599681368 0.524741885063879 0.8092682 0.1802145 prediction 0.457897429234978 Functional Loss - HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149412099 chr5:149412102 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_75768 0 0 0 0 2 HMGXB3 chr5:149412166 5'GT 149412166 Upstream 65bp
chr17 78172302 78172302 1 + G T UCEC 78172300 + 78172280 78172320 41 GAGCAGATCAGCGTCATCGGCGGGAACCTCACGGGCATCTT GAGCAGATCAGCGTCATCGGCGTGAACCTCACGGGCATCTT < 41bp 0.907638417493239 0.678694019175822 0.8637942 0.2975354 prediction 0.457888796634833 Functional Loss - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172300 chr17:78172302 nonsynonymous SNV 0.211 4 23 hm5C_associated_SNPs_75769 0 0 0 0 1 CARD14 chr17:78172390 5'GT 78172390 Upstream 89bp
chr14 57101670 57101670 1 + G T UCEC 57101667 + 57101647 57101687 41 CAATGAAGAAATGTGGCAAGCGAGGTGACTATTCTACATTT CAATGAAGAAATGTGGCAAGCGATGTGACTATTCTACATTT < 41bp 0.728939387946223 0.352816168614427 0.85358614 0.092708915 prediction 0.457878775892446 Functional Loss - TMEM260 ENSG00000070269 CDS Human protein_coding chr14:57101667 chr14:57101670 nonsynonymous SNV 0.923 4 24 hm5C_associated_SNPs_75771 0 0 1 0 1 TMEM260 chr14:57101617 3'AG 57101617 Downstream 54bp
chr8 133849985 133849985 1 + G T SARC 133849983 + 133849963 133850003 41 GAGTGCTTGTGTTGGCAACACAGCGTGTGCATGGGGCTGCT GAGTGCTTGTGTTGGCAACACATCGTGTGCATGGGGCTGCT < 41bp 0.728938401550882 0.38897134664465 0.12160441 0.08575678 prediction 0.457876803101765 Functional Loss - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133849983 chr8:133849985 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_75772 0 0 1 0 1 PHF20L1 chr8:133850056 5'GT 133850056 Upstream 72bp
chr2 176973690 176973690 1 + C T GBM 176973688 + 176973668 176973708 41 CCTATACCAAGTACCAGATCCGCGAACTGGAACGCGAGTTT CCTATACCAAGTACCAGATCCGTGAACTGGAACGCGAGTTT < 41bp 0.728937938825339 0.459417554562935 0.33131295 0.3040225 prediction 0.457875877650677 Functional Loss - HOXD11 ENSG00000128713 CDS Human protein_coding chr2:176973688 chr2:176973690 synonymous SNV . 0 23 hm5C_associated_SNPs_75773 0 0 1 0 1 HOXD11 chr2:176973635 3'AG 176973635 Downstream 56bp
chr16 2809575 2809575 1 + G A UCEC 2809572 + 2809552 2809592 41 GTGGTGGTCTTCCTTCAGGTCTCGAAGTACAACACCAGCCC GTGGTGGTCTTCCTTCAGGTCTCAAAGTACAACACCAGCCC < 41bp 0.766812778597206 0.537880909184351 0.8717608 0.14932793 prediction 0.457863738825711 Functional Loss - SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2809572 chr16:2809575 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_75777 0 0 1 0 2 SRRM2 chr16:2809570 3'AG 2809570 Downstream 6bp
chr16 2809575 2809575 1 + G A UCEC 2809572 + 2809552 2809592 41 GTGGTGGTCTTCCTTCAGGTCTCGAAGTACAACACCAGCCC GTGGTGGTCTTCCTTCAGGTCTCAAAGTACAACACCAGCCC < 41bp 0.766812778597206 0.537880909184351 0.8717608 0.14932793 prediction 0.457863738825711 Functional Loss - SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2809572 chr16:2809575 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_75777 0 0 1 0 2 SRRM2 chr16:2809662 5'GT 2809662 Upstream 88bp
chr1 170501385 170501385 1 + A C rs7531125 170501381 + 170501361 170501401 41 GCCGATGGCGCAAGGTTGGGCAGGATTCTCTGAGGAGGAAC GCCGATGGCGCAAGGTTGGGCAGGCTTCTCTGAGGAGGAAC < 41bp 0.91551413736107 0.686585140243207 0.7842348 0.8094593 prediction 0.457857994235726 Functional Loss - GORAB ENSG00000120370 CDS Human protein_coding chr1:170501381 chr1:170501385 synonymous SNV . 0 25 hm5C_associated_SNPs_75779 0 0 0 0 1 GORAB chr1:170501425 5'GT 170501425 Upstream 41bp
chr12 109839041 109839041 1 + C T UCEC 109839039 + 109839019 109839059 41 AGCGCCTGTCTTACCTGGGACTCGAGCGAGACCCCCAGCTG AGCGCCTGTCTTACCTGGGACTTGAGCGAGACCCCCAGCTG < 41bp 0.850802246679092 0.621875107299456 0.2931661 0.44898403 prediction 0.457854278759272 Functional Loss - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109839039 chr12:109839041 synonymous SNV . 0 23 hm5C_associated_SNPs_75783 0 0 0 0 1 MYO1H chr12:109839077 5'GT 109839077 Upstream 37bp
chr11 63312103 63312103 1 + C T SKCM 63312101 + 63312081 63312121 41 CTCTGATTGCAGGTGAGTACCCCGGGGCTGGCTCCTCCAGT CTCTGATTGCAGGTGAGTACCCTGGGGCTGGCTCCTCCAGT < 41bp 0.787725060685737 0.558799393794604 0.7020725 0.57538027 prediction 0.457851333782265 Functional Loss - RARRES3 ENSG00000133321 CDS Human protein_coding chr11:63312101 chr11:63312103 synonymous SNV . 0 23 hm5C_associated_SNPs_75784 0 0 0 0 1 RARRES3 chr11:63312093 3'AG 63312093 Downstream 11bp
chr3 42560718 42560718 1 + G T TGCT 42560716 + 42560696 42560736 41 TTCTGCCTTACCCCCATAGGCTGCAGCAAGATGTGGGACAA TTCTGCCTTACCCCCATAGGCTTCAGCAAGATGTGGGACAA < 41bp 0.728917706508883 0.400237346687373 0.086292624 0.041545242 prediction 0.457835413017766 Functional Loss - VIPR1 ENSG00000114812 CDS Human protein_coding chr3:42560716 chr3:42560718 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_75789 0 0 0 0 1 VIPR1 chr3:42560715 3'AG 42560715 Downstream 4bp
chr2 219677673 219677673 1 + G A rs190012697 219677670 + 219677650 219677690 41 AGAAGCTGATTGATGAGAAGCTCGAAGATATGGAGGCCCAA AGAAGCTGATTGATGAGAAGCTCAAAGATATGGAGGCCCAA < 41bp 0.774836925171332 0.545921133414236 0.25357643 0.28771248 prediction 0.457831583514192 Functional Loss - CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219677670 chr2:219677673 nonsynonymous SNV 0.043 0 24 hm5C_associated_SNPs_75790 1 0 1 0 1 CYP27A1 chr2:219677647 3'AG 219677647 Downstream 27bp
chr1 156027849 156027849 1 + C T LUAD 156027847 + 156027827 156027867 41 AGACCGTGGGCTTTGGAATGCTCAAGGCCAAGGTGTGTATG AGACCGTGGGCTTTGGAATGCTTAAGGCCAAGGTGTGTATG < 41bp 0.836409115843538 0.607495773008169 0.2112379 0.077744514 prediction 0.457826685670738 Functional Loss - LAMTOR2 ENSG00000116586 CDS Human protein_coding chr1:156027847 chr1:156027849 synonymous SNV . 0 23 hm5C_associated_SNPs_75791 0 0 1 0 2 LAMTOR2 chr1:156027769 3'AG 156027769 Downstream 81bp
chr1 156027849 156027849 1 + C T LUAD 156027847 + 156027827 156027867 41 AGACCGTGGGCTTTGGAATGCTCAAGGCCAAGGTGTGTATG AGACCGTGGGCTTTGGAATGCTTAAGGCCAAGGTGTGTATG < 41bp 0.836409115843538 0.607495773008169 0.2112379 0.077744514 prediction 0.457826685670738 Functional Loss - LAMTOR2 ENSG00000116586 CDS Human protein_coding chr1:156027847 chr1:156027849 synonymous SNV . 0 23 hm5C_associated_SNPs_75791 0 0 1 0 2 LAMTOR2 chr1:156027858 5'GT 156027858 Upstream 10bp
chr16 336691 336691 1 + G A rs113159258 336688 + 336668 336708 41 AGCTGGATGCCTTCGCTGTGCACGGCTTCCCTACTCTCAAG AGCTGGATGCCTTCGCTGTGCACAGCTTCCCTACTCTCAAG < 41bp 0.796555887465195 0.567643195327496 0.10293728 0.0053662956 prediction 0.457825384275398 Functional Loss - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:336688 chr16:336691 nonsynonymous SNV 0.011 0 24 hm5C_associated_SNPs_75792 0 0 0 0 1 PDIA2 chr16:336735 5'GT 336735 Upstream 45bp
chr12 53687097 53687097 1 + G A KIRP 53687094 + 53687074 53687114 41 ATCTCTGGGATGTGACTGACCGCGACATTGACCGCTACACG ATCTCTGGGATGTGACTGACCGCAACATTGACCGCTACACG < 41bp 0.763127721654903 0.534224726054455 0.17465195 0.1163674 prediction 0.457805991200895 Functional Loss - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53687094 chr12:53687097 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_75795 0 0 1 0 1 ESPL1 chr12:53687057 3'AG 53687057 Downstream 41bp
chr3 129233374 129233374 1 + G A KICH 129233371 + 129233351 129233391 41 AGCTGGGTACCCTGACCATCCGCGCCAAGCCCTTCCACGAC AGCTGGGTACCCTGACCATCCGCACCAAGCCCTTCCACGAC < 41bp 0.752076067204293 0.523173454572633 0.2203373 0.03535989 prediction 0.457805225263321 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129233371 chr3:129233374 nonsynonymous SNV 0.909 1 24 hm5C_associated_SNPs_75796 0 0 0 0 1 IFT122 chr3:129233397 5'GT 129233397 Upstream 24bp
chr19 22786092 22786092 1 + G T UCEC 22786089 + 22786069 22786109 41 AGGCCGGGGAGGGTTCTCCCCTCGACAACCCCAGTGCACAG AGGCCGGGGAGGGTTCTCCCCTCTACAACCCCAGTGCACAG < 41bp 0.911134573738425 0.682232114177281 0.805581 0.88840437 prediction 0.457804919122287 Functional Loss - GOLGA2P9 ENSG00000268823;ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22786089 chr19:22786092 . . 0 24 hm5C_associated_SNPs_75797 0 0 0 1 1 GOLGA2P9 chr19:22786021 3'AG 22786021 Downstream 72bp
chrX 153524266 153524266 1 + G T GBM 153524263 + 153524243 153524283 41 CCGGAGGAGGCCAGACCTGACAGGGGCACCTTGCAGGTGTT CCGGAGGAGGCCAGACCTGACAGTGGCACCTTGCAGGTGTT < 41bp 0.928716913179775 0.699820110813897 0.9205041 0.63434047 prediction 0.457793604731756 Functional Loss - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153524263 chrX:153524266 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_75800 0 0 0 0 1 TKTL1 chrX:153524346 5'GT 153524346 Upstream 81bp
chr1 11728793 11728793 1 + G A rs144734810 11728790 + 11728770 11728810 41 AACATCCTGCTGGAGCTGTTCACGCACGTGCCCGCCCGCCA AACATCCTGCTGGAGCTGTTCACACACGTGCCCGCCCGCCA < 41bp 0.728891083072762 0.496641345798007 0.3031378 0.13068628 prediction 0.457782166145523 Functional Loss - FBXO6 ENSG00000116663 CDS Human protein_coding chr1:11728790 chr1:11728793 synonymous SNV . 0 24 hm5C_associated_SNPs_75801 0 0 0 0 1 FBXO6 chr1:11728713 3'AG 11728713 Downstream 81bp
chr21 43838656 43838656 1 + G A SKCM 43838653 + 43838633 43838673 41 ATCTCACAGCGGACGGGCTGCCGGGGCTTCCTGCCGGAAAA ATCTCACAGCGGACGGGCTGCCGAGGCTTCCTGCCGGAAAA < 41bp 0.779972591440051 0.55108532670045 0.91379184 0.8503494 prediction 0.457774529479203 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43838653 chr21:43838656 synonymous SNV . 0 24 hm5C_associated_SNPs_75805 0 0 0 0 1 UBASH3A chr21:43838718 5'GT 43838718 Upstream 63bp
chr20 13765904 13765904 1 + G T BLCA 13765901 + 13765881 13765921 41 AGAACTGGGCAGCCCGGCAGCCCGAGCCGACCAAATTTGAC AGAACTGGGCAGCCCGGCAGCCCTAGCCGACCAAATTTGAC < 41bp 0.728877753514078 0.349684286159254 0.09872368 0.039064646 prediction 0.457755507028155 Functional Loss - NDUFAF5 ENSG00000101247 CDS Human protein_coding chr20:13765901 chr20:13765904 stopgain 0.526 0 24 hm5C_associated_SNPs_75810 0 0 1 0 1 NDUFAF5 chr20:13765936 5'GT 13765936 Upstream 33bp
chr17 7259595 7259595 1 + G T UCEC 7259592 + 7259572 7259612 41 GGCCCCGAAAGCGCTGCTTCCCAGGTCCTCACGCCCATCTT GGCCCCGAAAGCGCTGCTTCCCATGTCCTCACGCCCATCTT < 41bp 0.72887746420478 0.328657692306332 0.9177466 0.11281362 prediction 0.457754928409559 Functional Loss - TMEM95 ENSG00000182896 CDS Human protein_coding chr17:7259592 chr17:7259595 stopgain 0.980 0 24 hm5C_associated_SNPs_75811 0 0 0 0 2 TMEM95 chr17:7259515 3'AG 7259515 Downstream 81bp
chr17 7259595 7259595 1 + G T UCEC 7259592 + 7259572 7259612 41 GGCCCCGAAAGCGCTGCTTCCCAGGTCCTCACGCCCATCTT GGCCCCGAAAGCGCTGCTTCCCATGTCCTCACGCCCATCTT < 41bp 0.72887746420478 0.328657692306332 0.9177466 0.11281362 prediction 0.457754928409559 Functional Loss - TMEM95 ENSG00000182896 CDS Human protein_coding chr17:7259592 chr17:7259595 stopgain 0.980 0 24 hm5C_associated_SNPs_75811 0 0 0 0 2 TMEM95 chr17:7259595 5'GT 7259595 Upstream 1bp
chr3 9425908 9425908 1 + G T UCEC 9425905 + 9425885 9425925 41 TTCTATTATAGGATGGGATCCAAGAAGAGAAACTGGAACCT TTCTATTATAGGATGGGATCCAATAAGAGAAACTGGAACCT < 41bp 0.728874832556553 0.35620045111586 0.39158 0.1481319 prediction 0.457749665113105 Functional Loss - THUMPD3 ENSG00000134077 CDS Human protein_coding chr3:9425905 chr3:9425908 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_75813 0 0 1 0 1 THUMPD3 chr3:9425896 3'AG 9425896 Downstream 13bp
chr1 119962125 119962125 1 + C T BLCA 119962123 + 119962103 119962143 41 AAAAGAGCCTGCCAGGACGTCTCGGTCGTCATCCACACCGC AAAAGAGCCTGCCAGGACGTCTTGGTCGTCATCCACACCGC < 41bp 0.834166715991442 0.605292267989646 0.20852184 0.19847926 prediction 0.457748896003593 Functional Loss - HSD3B2 ENSG00000203859 CDS Human protein_coding chr1:119962123 chr1:119962125 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_75814 0 0 0 0 2 HSD3B2 chr1:119962041 3'AG 119962041 Downstream 85bp
chr1 119962125 119962125 1 + C T BLCA 119962123 + 119962103 119962143 41 AAAAGAGCCTGCCAGGACGTCTCGGTCGTCATCCACACCGC AAAAGAGCCTGCCAGGACGTCTTGGTCGTCATCCACACCGC < 41bp 0.834166715991442 0.605292267989646 0.20852184 0.19847926 prediction 0.457748896003593 Functional Loss - HSD3B2 ENSG00000203859 CDS Human protein_coding chr1:119962123 chr1:119962125 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_75814 0 0 0 0 2 HSD3B2 chr1:119962205 5'GT 119962205 Upstream 81bp
chr7 38259225 38259225 1 + G T LIHC 38259223 + 38259203 38259243 41 ACTTATACCTGGTGGTCTTTCTGATGGTCAGTTTTATTCCC ACTTATACCTGGTGGTCTTTCTTATGGTCAGTTTTATTCCC < 41bp 0.72887432493372 0.390343647843969 0.39577332 0.17602873 prediction 0.45774864986744 Functional Loss - STARD3NL ENSG00000010270 CDS Human protein_coding chr7:38259223 chr7:38259225 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_75815 0 0 1 0 2 STARD3NL chr7:38259166 3'AG 38259166 Downstream 60bp
chr7 38259225 38259225 1 + G T LIHC 38259223 + 38259203 38259243 41 ACTTATACCTGGTGGTCTTTCTGATGGTCAGTTTTATTCCC ACTTATACCTGGTGGTCTTTCTTATGGTCAGTTTTATTCCC < 41bp 0.72887432493372 0.390343647843969 0.39577332 0.17602873 prediction 0.45774864986744 Functional Loss - STARD3NL ENSG00000010270 CDS Human protein_coding chr7:38259223 chr7:38259225 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_75815 0 0 1 0 2 STARD3NL chr7:38259261 5'GT 38259261 Upstream 37bp
chr1 9027773 9027773 1 + C T SKCM 9027771 + 9027751 9027791 41 AGGACATGCTGCCCAGGAACCTCCAGCACTACTACACCTAC AGGACATGCTGCCCAGGAACCTTCAGCACTACTACACCTAC < 41bp 0.858511435189039 0.629639312347404 0.92513436 0.112988085 prediction 0.45774424568327 Functional Loss - CA6 ENSG00000131686 CDS Human protein_coding chr1:9027771 chr1:9027773 synonymous SNV . 0 23 hm5C_associated_SNPs_75817 0 0 0 0 1 CA6 chr1:9027718 3'AG 9027718 Downstream 56bp
chr2 27157543 27157543 1 + G A UCEC 27157540 + 27157520 27157560 41 TCCCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACT TCCCACGCGGCTGCCTATGTCACAGTGCCTCCCCTGAGACT < 41bp 0.79643621999513 0.567566440551891 0.87622714 0.27813178 prediction 0.457739558886479 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157540 chr2:27157543 synonymous SNV . 0 24 hm5C_associated_SNPs_75818 0 0 0 0 2 DPYSL5 chr2:27157446 3'AG 27157446 Downstream 98bp
chr2 27157543 27157543 1 + G A UCEC 27157540 + 27157520 27157560 41 TCCCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACT TCCCACGCGGCTGCCTATGTCACAGTGCCTCCCCTGAGACT < 41bp 0.79643621999513 0.567566440551891 0.87622714 0.27813178 prediction 0.457739558886479 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157540 chr2:27157543 synonymous SNV . 0 24 hm5C_associated_SNPs_75818 0 0 0 0 2 DPYSL5 chr2:27157602 5'GT 27157602 Upstream 60bp
chrX 8433536 8433536 1 + G A CESC 8433533 + 8433513 8433553 41 TCGGGACCTCCGGCCAAGGCCAAGGAGGCAGGAAAGAGGAA TCGGGACCTCCGGCCAAGGCCAAAGAGGCAGGAAAGAGGAA < 41bp 0.789014954595134 0.560149910596904 0.8476107 0.4649006 prediction 0.45773008799646 Functional Loss - VCX3B ENSG00000205642 CDS Human protein_coding chrX:8433533 chrX:8433536 synonymous SNV . 0 24 hm5C_associated_SNPs_75820 0 0 0 0 1 VCX3B chrX:8433593 5'GT 8433593 Upstream 58bp
chr3 35723313 35723313 1 + C T SKCM 35723311 + 35723291 35723331 41 GACTGAGCAGGAGACGGCCACTCCAGAGAACGGCATTGTTA GACTGAGCAGGAGACGGCCACTTCAGAGAACGGCATTGTTA < 41bp 0.728862770852259 0.435402615106766 0.9223575 0.16046569 prediction 0.457725541704519 Functional Loss - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35723311 chr3:35723313 nonsynonymous SNV 0.629 3 23 hm5C_associated_SNPs_75822 0 0 0 0 1 ARPP21 chr3:35723372 5'GT 35723372 Upstream 60bp
chr3 128516835 128516835 1 + A C CESC 128516831 + 128516811 128516851 41 CAGTATGTGAATAAGAAATTCAGCAATCAGTACAAAGCCAC CAGTATGTGAATAAGAAATTCAGCCATCAGTACAAAGCCAC < 41bp 0.72886243678358 0.310011725307298 0.10143331 0.07274279 prediction 0.45772487356716 Functional Loss - RAB7A ENSG00000075785 CDS Human protein_coding chr3:128516831 chr3:128516835 nonsynonymous SNV 0.931 1 25 hm5C_associated_SNPs_75823 0 0 1 0 1 RAB7A chr3:128516912 5'GT 128516912 Upstream 78bp
chr3 128516832 128516832 1 + A C HNSC 128516831 + 128516811 128516851 41 CAGTATGTGAATAAGAAATTCAGCAATCAGTACAAAGCCAC CAGTATGTGAATAAGAAATTCCGCAATCAGTACAAAGCCAC < 41bp 0.72886243678358 0.479113577987006 0.10143331 0.06806591 prediction 0.45772487356716 Functional Loss - RAB7A ENSG00000075785 CDS Human protein_coding chr3:128516831 chr3:128516832 nonsynonymous SNV 0.974 1 22 hm5C_associated_SNPs_75824 0 0 1 0 1 RAB7A chr3:128516912 5'GT 128516912 Upstream 81bp
chr3 128516833 128516833 1 + G T TGCT 128516831 + 128516811 128516851 41 CAGTATGTGAATAAGAAATTCAGCAATCAGTACAAAGCCAC CAGTATGTGAATAAGAAATTCATCAATCAGTACAAAGCCAC < 41bp 0.72886243678358 0.403726538234068 0.10143331 0.06676841 prediction 0.45772487356716 Functional Loss - RAB7A ENSG00000075785 CDS Human protein_coding chr3:128516831 chr3:128516833 nonsynonymous SNV 0.946 1 23 hm5C_associated_SNPs_75825 0 0 1 0 1 RAB7A chr3:128516912 5'GT 128516912 Upstream 80bp
chr22 39078362 39078362 1 + T C COAD 39078361 + 39078341 39078381 41 TGTCGGAGAGACTATGGGGCCTGACGGAGATGTTTCCGGAG TGTCGGAGAGACTATGGGGCCCGACGGAGATGTTTCCGGAG < 41bp 0.733173655230629 0.504314244559895 0.17314893 0.0763599 prediction 0.457718821341468 Functional Loss - TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078361 chr22:39078362 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_75826 0 0 1 0 2 TOMM22 chr22:39078328 3'AG 39078328 Downstream 35bp
chr22 39078362 39078362 1 + T C COAD 39078361 + 39078341 39078381 41 TGTCGGAGAGACTATGGGGCCTGACGGAGATGTTTCCGGAG TGTCGGAGAGACTATGGGGCCCGACGGAGATGTTTCCGGAG < 41bp 0.733173655230629 0.504314244559895 0.17314893 0.0763599 prediction 0.457718821341468 Functional Loss - TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078361 chr22:39078362 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_75826 0 0 1 0 2 TOMM22 chr22:39078446 5'GT 39078446 Upstream 85bp
chr1 207307905 207307905 1 + C T UCEC 207307903 + 207307883 207307923 41 GCTATATGCCAAGGAGATGGCACGTGGAGTCCCCGAACACC GCTATATGCCAAGGAGATGGCATGTGGAGTCCCCGAACACC < 41bp 0.728853629342364 0.467924182814099 0.17881641 0.13993773 prediction 0.457707258684729 Functional Loss - C4BPA ENSG00000123838 CDS Human protein_coding chr1:207307903 chr1:207307905 nonsynonymous SNV 0.084 3 23 hm5C_associated_SNPs_75827 0 0 1 0 1 C4BPA chr1:207307937 5'GT 207307937 Upstream 33bp
chr2 71256139 71256139 1 + C T LUSC 71256137 + 71256117 71256157 41 ATCCAGAACTGCAGCCCATCCTCGCTGGGCTGTCCCTGTCC ATCCAGAACTGCAGCCCATCCTTGCTGGGCTGTCCCTGTCC < 41bp 0.736447729314087 0.507601849022687 0.20643023 0.030350119 prediction 0.457691760582799 Functional Loss - OR7E91P ENSG00000236469 ncRNA_intronic Human antisense chr2:71256137 chr2:71256139 . . 0 23 hm5C_associated_SNPs_75831 0 0 0 0 1 OR7E91P chr2:71256046 3'AG 71256046 Downstream 94bp
chr9 139887582 139887582 1 + C T UCEC 139887580 + 139887560 139887600 41 CTGACGCTTTCAGGGGGGCCCTCGGCACTGGCCTTTGACCT CTGACGCTTTCAGGGGGGCCCTTGGCACTGGCCTTTGACCT < 41bp 0.728844812272493 0.468565567100153 0.4250161 0.35673034 prediction 0.457689624544987 Functional Loss - C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887580 chr9:139887582 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_75832 0 0 1 0 1 C9orf142 chr9:139887505 3'AG 139887505 Downstream 78bp
chr16 57110788 57110788 1 + G A LGG 57110785 + 57110765 57110805 41 TGCCACCTTTCTGAGGCTCTCAGGGCTGCCACCAGCCTAGA TGCCACCTTTCTGAGGCTCTCAGAGCTGCCACCAGCCTAGA < 41bp 0.74646120432778 0.517619319971043 0.9364025 0.9002276 prediction 0.457683768713474 Functional Loss - NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57110785 chr16:57110788 synonymous SNV . 0 24 hm5C_associated_SNPs_75835 0 0 0 0 2 NLRC5 chr16:57110731 3'AG 57110731 Downstream 58bp
chr16 57110788 57110788 1 + G A LGG 57110785 + 57110765 57110805 41 TGCCACCTTTCTGAGGCTCTCAGGGCTGCCACCAGCCTAGA TGCCACCTTTCTGAGGCTCTCAGAGCTGCCACCAGCCTAGA < 41bp 0.74646120432778 0.517619319971043 0.9364025 0.9002276 prediction 0.457683768713474 Functional Loss - NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57110785 chr16:57110788 synonymous SNV . 0 24 hm5C_associated_SNPs_75835 0 0 0 0 2 NLRC5 chr16:57110814 5'GT 57110814 Upstream 27bp
chr8 67012244 67012244 1 + G A SKCM 67012241 + 67012221 67012261 41 ACAGCTAATCAAAGAAGGATCTCGAAGTTATTGCACAGACT ACAGCTAATCAAAGAAGGATCTCAAAGTTATTGCACAGACT < 41bp 0.740340372097865 0.511499950257207 0.47676262 0.09659463 prediction 0.457680843681316 Functional Loss - DNAJC5B ENSG00000147570 CDS Human protein_coding chr8:67012241 chr8:67012244 nonsynonymous SNV 0.965 1 24 hm5C_associated_SNPs_75836 0 0 0 0 1 DNAJC5B chr8:67012172 3'AG 67012172 Downstream 73bp
chr19 17974038 17974038 1 + G A UCEC 17974035 + 17974015 17974055 41 CCTGCGCCGTCAGCACAAGCCACGCTTCACCACCAAGAGGC CCTGCGCCGTCAGCACAAGCCACACTTCACCACCAAGAGGC < 41bp 0.761808400886037 0.532969404704486 0.10379675 0.039744645 prediction 0.457677992363102 Functional Loss - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17974035 chr19:17974038 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_75837 0 0 0 0 1 RPL18A chr19:17973980 3'AG 17973980 Downstream 59bp
chr7 102106473 102106473 1 + G T UCEC 102106471 + 102106451 102106491 41 TTCCCCAAGCTCGAGGAACTCAGCCTGGAGGGCAACCCCTT TTCCCCAAGCTCGAGGAACTCATCCTGGAGGGCAACCCCTT < 41bp 0.728838033144775 0.371976875353281 0.5564192 0.66029036 prediction 0.45767606628955 Functional Loss - LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102106471 chr7:102106473 nonsynonymous SNV 0.987 0 23 hm5C_associated_SNPs_75838 0 0 1 0 1 LRWD1 chr7:102106498 5'GT 102106498 Upstream 26bp
chr1 173726238 173726238 1 + A C UCEC 173726234 + 173726214 173726254 41 GCGGAGTTGGGGTCAGTGTTCTTGATGATCTGTTATATGCA GCGGAGTTGGGGTCAGTGTTCTTGCTGATCTGTTATATGCA < 41bp 0.728836997897832 0.31098714836607 0.16749752 0.20320398 prediction 0.457673995795663 Functional Loss - KLHL20 ENSG00000076321 CDS Human protein_coding chr1:173726234 chr1:173726238 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_75839 0 0 1 0 1 KLHL20 chr1:173726298 5'GT 173726298 Upstream 61bp
chr17 4790994 4790994 1 + A C COAD 4790990 + 4790970 4791010 41 AGCAGCAGCTGCAGCAGCAGCAGCAGCGAGACCCCGAGGCA AGCAGCAGCTGCAGCAGCAGCAGCCGCGAGACCCCGAGGCA < 41bp 0.728833912723332 0.356237472657772 0.31816804 0.20076632 prediction 0.457667825446665 Functional Loss - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4790990 chr17:4790994 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_75841 0 0 1 0 1 MINK1 chr17:4791085 5'GT 4791085 Upstream 92bp
chr1 17664547 17664547 1 + G A SKCM 17664544 + 17664524 17664564 41 GGTGTCCAGAGGACCTGGACCTGGGGCCCTTGTGGACAGGG GGTGTCCAGAGGACCTGGACCTGAGGCCCTTGTGGACAGGG < 41bp 0.742479538899516 0.513646108179946 0.32674402 0.17710403 prediction 0.45766686143914 Functional Loss - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17664544 chr1:17664547 stopgain 0.995 1 24 hm5C_associated_SNPs_75842 0 0 0 0 1 PADI4 chr1:17664533 3'AG 17664533 Downstream 15bp
chr20 34611567 34611567 1 + G A SKCM 34611564 + 34611544 34611584 41 TCCAGAGGGTGAATGCGACACACGACCCTTGATCCTGATGA TCCAGAGGGTGAATGCGACACACAACCCTTGATCCTGATGA < 41bp 0.757498153031765 0.52867005021536 0.013239473 0.0049043 prediction 0.457656205632809 Functional Loss - CNBD2 ENSG00000149646 CDS Human protein_coding chr20:34611564 chr20:34611567 nonsynonymous SNV 0.052 4 24 hm5C_associated_SNPs_75844 0 0 0 0 1 CNBD2 chr20:34611536 3'AG 34611536 Downstream 32bp
chr4 2896361 2896361 1 + G C LUSC 2896357 + 2896337 2896377 41 TAGATCGTGGAAGCACTAATCTGGGAGTGAATCAGGCCGGC TAGATCGTGGAAGCACTAATCTGGCAGTGAATCAGGCCGGC < 41bp 0.751301887387679 0.522474530089628 0.9016857 0.5528211 prediction 0.457654714596102 Functional Loss - ADD1 ENSG00000087274 CDS Human protein_coding chr4:2896357 chr4:2896361 nonsynonymous SNV 0.983 3 25 hm5C_associated_SNPs_75845 0 0 0 0 2 ADD1 chr4:2896309 3'AG 2896309 Downstream 53bp
chr4 2896361 2896361 1 + G C LUSC 2896357 + 2896337 2896377 41 TAGATCGTGGAAGCACTAATCTGGGAGTGAATCAGGCCGGC TAGATCGTGGAAGCACTAATCTGGCAGTGAATCAGGCCGGC < 41bp 0.751301887387679 0.522474530089628 0.9016857 0.5528211 prediction 0.457654714596102 Functional Loss - ADD1 ENSG00000087274 CDS Human protein_coding chr4:2896357 chr4:2896361 nonsynonymous SNV 0.983 3 25 hm5C_associated_SNPs_75845 0 0 0 0 2 ADD1 chr4:2896458 5'GT 2896458 Upstream 98bp
chr3 122514299 122514299 1 + G A GBM 122514296 + 122514276 122514316 41 GCGCCAGGCCTACGGCTTCTCCAGCTGGGACATCGCGCTGC GCGCCAGGCCTACGGCTTCTCCAACTGGGACATCGCGCTGC < 41bp 0.728826696201059 0.484183516334264 0.7035778 0.32872874 prediction 0.457653392402118 Functional Loss - DIRC2 ENSG00000138463 CDS Human protein_coding chr3:122514296 chr3:122514299 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_75846 0 0 1 0 1 DIRC2 chr3:122514382 5'GT 122514382 Upstream 84bp
chr19 41628807 41628807 1 + G A UCEC 41628804 + 41628784 41628824 41 AACCTGCTCTTTGGCGGCACCAAGACGGTGAGCACCACGCT AACCTGCTCTTTGGCGGCACCAAAACGGTGAGCACCACGCT < 41bp 0.782388191991331 0.553561995391755 0.2955183 0.39349443 prediction 0.457652393199152 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41628804 chr19:41628807 synonymous SNV . 0 24 hm5C_associated_SNPs_75847 0 0 0 0 3 CYP2F1 chr19:41628727 3'AG 41628727 Downstream 81bp
chr19 41628807 41628807 1 + G A UCEC 41628804 + 41628784 41628824 41 AACCTGCTCTTTGGCGGCACCAAGACGGTGAGCACCACGCT AACCTGCTCTTTGGCGGCACCAAAACGGTGAGCACCACGCT < 41bp 0.782388191991331 0.553561995391755 0.2955183 0.39349443 prediction 0.457652393199152 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41628804 chr19:41628807 synonymous SNV . 0 24 hm5C_associated_SNPs_75847 0 0 0 0 3 CYP2F1 chr19:41628810 5'GT 41628810 Upstream 4bp
chr19 41628807 41628807 1 + G A UCEC 41628804 + 41628784 41628824 41 AACCTGCTCTTTGGCGGCACCAAGACGGTGAGCACCACGCT AACCTGCTCTTTGGCGGCACCAAAACGGTGAGCACCACGCT < 41bp 0.782388191991331 0.553561995391755 0.2955183 0.39349443 prediction 0.457652393199152 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41628804 chr19:41628807 synonymous SNV . 0 24 hm5C_associated_SNPs_75847 0 0 0 0 3 CYP2F1 chr19:41628868 5'GT 41628868 Upstream 62bp
chr1 68152171 68152171 1 + G A rs149179509 68152168 + 68152148 68152188 41 AACATCCTGCGCGTCAGCAACCCGGGCCGGCTGGCGGAGCT AACATCCTGCGCGTCAGCAACCCAGGCCGGCTGGCGGAGCT < 41bp 0.728826047063038 0.488387432040632 0.7511077 0.26979202 prediction 0.457652094126076 Functional Loss - GADD45A ENSG00000116717 CDS Human protein_coding chr1:68152168 chr1:68152171 synonymous SNV . 0 24 hm5C_associated_SNPs_75848 0 0 1 0 1 GADD45A chr1:68152270 5'GT 68152270 Upstream 100bp
chr17 18707521 18707521 1 + G T UCEC 18707519 + 18707499 18707539 41 TACATCAGGTGTAAGGTGCGCAGCAGAAAGCATTTAACCAG TACATCAGGTGTAAGGTGCGCATCAGAAAGCATTTAACCAG < 41bp 0.885628453756726 0.656802412131101 0.2632391 0.10114065 prediction 0.457652083251251 Functional Loss - TVP23B ENSG00000171928 CDS Human protein_coding chr17:18707519 chr17:18707521 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_75849 0 0 0 0 2 TVP23B chr17:18707451 3'AG 18707451 Downstream 71bp
chr17 18707521 18707521 1 + G T UCEC 18707519 + 18707499 18707539 41 TACATCAGGTGTAAGGTGCGCAGCAGAAAGCATTTAACCAG TACATCAGGTGTAAGGTGCGCATCAGAAAGCATTTAACCAG < 41bp 0.885628453756726 0.656802412131101 0.2632391 0.10114065 prediction 0.457652083251251 Functional Loss - TVP23B ENSG00000171928 CDS Human protein_coding chr17:18707519 chr17:18707521 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_75849 0 0 0 0 2 TVP23B chr17:18707579 5'GT 18707579 Upstream 59bp
chr7 94917904 94917904 1 + G T LUSC 94917902 + 94917882 94917922 41 AGTGTCAGAATCGGGCCGTTCAGGAATGGAGTGTGCAGCAG AGTGTCAGAATCGGGCCGTTCATGAATGGAGTGTGCAGCAG < 41bp 0.728822845002393 0.40719727005762 0.6655432 0.13464344 prediction 0.457645690004785 Functional Loss - PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917902 chr7:94917904 nonsynonymous SNV 0.281 0 23 hm5C_associated_SNPs_75850 0 0 1 0 1 PPP1R9A chr7:94917848 3'AG 94917848 Downstream 57bp
chr1 1120466 1120466 1 + G C BLCA 1120462 + 1120442 1120482 41 TGGAAGGCCCGGGGCCTCGCCAAGGACTGGGTCTTCACCAC TGGAAGGCCCGGGGCCTCGCCAAGCACTGGGTCTTCACCAC < 41bp 0.860085806527957 0.63127204322005 0.9336151 0.8911881 prediction 0.457627526615815 Functional Loss - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1120462 chr1:1120466 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_75852 0 0 0 0 1 TTLL10 chr1:1120489 5'GT 1120489 Upstream 24bp
chr1 16380140 16380140 1 + C T GBM 16380138 + 16380118 16380158 41 GCCCCTCTGCCTGCAGTTCCCACCGCGTGAGGGTGGAGCAC GCCCCTCTGCCTGCAGTTCCCATCGCGTGAGGGTGGAGCAC < 41bp 0.728811771239487 0.454782817589962 0.28273633 0.21189696 prediction 0.457623542478973 Functional Loss - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16380138 chr1:16380140 synonymous SNV . 0 23 hm5C_associated_SNPs_75853 0 0 0 0 1 CLCNKB chr1:16380134 3'AG 16380134 Downstream 7bp
chr10 102509562 102509562 1 + G A COAD 102509559 + 102509539 102509579 41 TTGTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGC TTGTGAACGGCCGGCCCCTACCCAACGTGGTGAGGCAGCGC < 41bp 0.768760541186122 0.539951812398937 0.5310422 0.13884446 prediction 0.457617457574371 Functional Loss - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102509559 chr10:102509562 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_75855 0 0 0 0 2 PAX2 chr10:102509503 3'AG 102509503 Downstream 60bp
chr10 102509562 102509562 1 + G A COAD 102509559 + 102509539 102509579 41 TTGTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGC TTGTGAACGGCCGGCCCCTACCCAACGTGGTGAGGCAGCGC < 41bp 0.768760541186122 0.539951812398937 0.5310422 0.13884446 prediction 0.457617457574371 Functional Loss - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102509559 chr10:102509562 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_75855 0 0 0 0 2 PAX2 chr10:102509506 3'AG 102509506 Downstream 57bp
chr6 150719240 150719240 1 + G A rs73619510 150719237 + 150719217 150719257 41 CACTCCTCTCAACTGTGGCCCTCGACTGAGGGTGCTCCTGG CACTCCTCTCAACTGTGGCCCTCAACTGAGGGTGCTCCTGG < 41bp 0.749963534170677 0.521159883407016 0.3243117 0.32484168 prediction 0.457607301527321 Functional Loss - IYD ENSG00000009765 CDS Human protein_coding chr6:150719237 chr6:150719240 nonsynonymous SNV 0.967 0 24 hm5C_associated_SNPs_75856 0 0 0 0 1 IYD chr6:150719191 3'AG 150719191 Downstream 50bp
chr19 18468277 18468277 1 + G A UCEC 18468274 + 18468254 18468294 41 ACAACAAGGGCTACAAGGGGCTGGACAACTGCCGCTTTTGC ACAACAAGGGCTACAAGGGGCTGAACAACTGCCGCTTTTGC < 41bp 0.758820395060068 0.530020406168629 0.24356368 0.2180734 prediction 0.457599977782879 Functional Loss - PGPEP1 ENSG00000130517 CDS Human protein_coding chr19:18468274 chr19:18468277 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_75859 0 0 0 1 1 PGPEP1 chr19:18468193 3'AG 18468193 Downstream 85bp
chr20 2636146 2636146 1 + C T UCEC 2636144 + 2636124 2636164 41 TAAGGCTATTCTGGATGCCTCACGGTCCTCCATGGGTCAGT TAAGGCTATTCTGGATGCCTCATGGTCCTCCATGGGTCAGT < 41bp 0.728799769626605 0.469947912377139 0.09046051 0.19318101 prediction 0.457599539253209 Functional Loss - NOP56 ENSG00000101361 CDS Human protein_coding chr20:2636144 chr20:2636146 nonsynonymous SNV 0.974 4 23 hm5C_associated_SNPs_75860 0 0 1 0 1 NOP56 chr20:2636158 5'GT 2636158 Upstream 13bp
chr11 64126759 64126759 1 + G T UCEC 64126757 + 64126737 64126777 41 CGCCGTGGAGCTGCGGATCACAGAAGGTGGGTGTGGGGCCT CGCCGTGGAGCTGCGGATCACATAAGGTGGGTGTGGGGCCT < 41bp 0.8970212254891 0.668222282674896 0.8675776 0.41634193 prediction 0.457597885628409 Functional Loss - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64126757 chr11:64126759 stopgain 0.969 0 23 hm5C_associated_SNPs_75862 0 0 1 0 1 RPS6KA4 chr11:64126762 5'GT 64126762 Upstream 4bp
chr1 26507079 26507079 1 + G T LUSC 26507077 + 26507057 26507097 41 CACCAGGAGCTCATCCTGGGCGGGGTGGAACAGCTCCAGGC CACCAGGAGCTCATCCTGGGCGTGGTGGAACAGCTCCAGGC < 41bp 0.905048088535065 0.676250911370318 0.9104364 0.7394019 prediction 0.457594354329495 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26507077 chr1:26507079 nonsynonymous SNV 0.683 4 23 hm5C_associated_SNPs_75864 0 0 1 0 1 CNKSR1 chr1:26507101 5'GT 26507101 Upstream 23bp
chr6 33650351 33650351 1 + C T rs144998518 33650349 + 33650329 33650369 41 TGCAGTCTACCACACGCCTCCTCGAGTGTCCGTGGCTACAG TGCAGTCTACCACACGCCTCCTTGAGTGTCCGTGGCTACAG < 41bp 0.728795775578805 0.449469400172588 0.14094177 0.01729384 prediction 0.45759155115761 Functional Loss - ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33650349 chr6:33650351 synonymous SNV . 0 23 hm5C_associated_SNPs_75865 0 0 0 0 2 ITPR3 chr6:33650301 3'AG 33650301 Downstream 51bp
chr6 33650351 33650351 1 + C T rs144998518 33650349 + 33650329 33650369 41 TGCAGTCTACCACACGCCTCCTCGAGTGTCCGTGGCTACAG TGCAGTCTACCACACGCCTCCTTGAGTGTCCGTGGCTACAG < 41bp 0.728795775578805 0.449469400172588 0.14094177 0.01729384 prediction 0.45759155115761 Functional Loss - ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33650349 chr6:33650351 synonymous SNV . 0 23 hm5C_associated_SNPs_75865 0 0 0 0 2 ITPR3 chr6:33650421 5'GT 33650421 Upstream 71bp
chr6 33650353 33650353 1 + A C rs572195243 33650349 + 33650329 33650369 41 TGCAGTCTACCACACGCCTCCTCGAGTGTCCGTGGCTACAG TGCAGTCTACCACACGCCTCCTCGCGTGTCCGTGGCTACAG < 41bp 0.728795775578805 0.316971737092092 0.14094177 0.03346303 prediction 0.45759155115761 Functional Loss - ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33650349 chr6:33650353 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_75866 0 0 0 0 2 ITPR3 chr6:33650301 3'AG 33650301 Downstream 53bp
chr6 33650353 33650353 1 + A C rs572195243 33650349 + 33650329 33650369 41 TGCAGTCTACCACACGCCTCCTCGAGTGTCCGTGGCTACAG TGCAGTCTACCACACGCCTCCTCGCGTGTCCGTGGCTACAG < 41bp 0.728795775578805 0.316971737092092 0.14094177 0.03346303 prediction 0.45759155115761 Functional Loss - ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33650349 chr6:33650353 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_75866 0 0 0 0 2 ITPR3 chr6:33650421 5'GT 33650421 Upstream 69bp
chr11 59559649 59559649 1 + G A SKCM 59559646 + 59559626 59559666 41 ATGAAGCTCAAGTGGACTTCCGAGAACGCAGCAAAGGGCGA ATGAAGCTCAAGTGGACTTCCGAAAACGCAGCAAAGGGCGA < 41bp 0.751258992520076 0.52246501686382 0.29908758 0.16614339 prediction 0.457587951312511 Functional Loss - STX3 ENSG00000166900 CDS Human protein_coding chr11:59559646 chr11:59559649 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_75868 0 0 0 0 2 STX3 chr11:59559580 3'AG 59559580 Downstream 70bp
chr11 59559649 59559649 1 + G A SKCM 59559646 + 59559626 59559666 41 ATGAAGCTCAAGTGGACTTCCGAGAACGCAGCAAAGGGCGA ATGAAGCTCAAGTGGACTTCCGAAAACGCAGCAAAGGGCGA < 41bp 0.751258992520076 0.52246501686382 0.29908758 0.16614339 prediction 0.457587951312511 Functional Loss - STX3 ENSG00000166900 CDS Human protein_coding chr11:59559646 chr11:59559649 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_75868 0 0 0 0 2 STX3 chr11:59559688 5'GT 59559688 Upstream 40bp
chr4 154387597 154387597 1 + G C rs71620317 154387593 + 154387573 154387613 41 GCCCGGCTGCTACTGCCGCACCGCGGCGGCCGTGAACCTCC GCCCGGCTGCTACTGCCGCACCGCCGCGGCCGTGAACCTCC < 41bp 0.728791565527264 0.450129521484378 0.45863003 0.11342877 prediction 0.457583131054528 Functional Loss - TMEM131L ENSG00000121210 CDS Human protein_coding chr4:154387593 chr4:154387597 synonymous SNV . 0 25 hm5C_associated_SNPs_75869 0 0 1 0 1 TMEM131L chr4:154387673 5'GT 154387673 Upstream 77bp
chr15 90996087 90996087 1 + G A UCEC 90996084 + 90996064 90996104 41 CTGTTTTGGAACTGATGAATCCCGAAGCCCAGCTGCCCCAG CTGTTTTGGAACTGATGAATCCCAAAGCCCAGCTGCCCCAG < 41bp 0.774231446908977 0.545446105512349 0.78281754 0.3434273 prediction 0.457570682793255 Functional Loss - IQGAP1 ENSG00000140575 CDS Human protein_coding chr15:90996084 chr15:90996087 nonsynonymous SNV 0.975 1 24 hm5C_associated_SNPs_75872 0 0 1 0 2 IQGAP1 chr15:90996007 3'AG 90996007 Downstream 81bp
chr15 90996087 90996087 1 + G A UCEC 90996084 + 90996064 90996104 41 CTGTTTTGGAACTGATGAATCCCGAAGCCCAGCTGCCCCAG CTGTTTTGGAACTGATGAATCCCAAAGCCCAGCTGCCCCAG < 41bp 0.774231446908977 0.545446105512349 0.78281754 0.3434273 prediction 0.457570682793255 Functional Loss - IQGAP1 ENSG00000140575 CDS Human protein_coding chr15:90996084 chr15:90996087 nonsynonymous SNV 0.975 1 24 hm5C_associated_SNPs_75872 0 0 1 0 2 IQGAP1 chr15:90996170 5'GT 90996170 Upstream 84bp
chr11 20676339 20676339 1 + G T LUSC 20676336 + 20676316 20676356 41 CGCGGGGAGCGTTACAAGAACATGATCGACCCCTTGGGAAC CGCGGGGAGCGTTACAAGAACATTATCGACCCCTTGGGAAC < 41bp 0.728785310539618 0.331691784286444 0.08307713 0.09733787 prediction 0.457570621079236 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20676336 chr11:20676339 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_75873 0 0 0 0 1 SLC6A5 chr11:20676259 3'AG 20676259 Downstream 81bp
chr1 152975586 152975586 1 + G T COAD 152975584 + 152975564 152975604 41 AACCCAGCCAGCCTCCACCTCAGGAAATATTTGTTCCCACA AACCCAGCCAGCCTCCACCTCATGAAATATTTGTTCCCACA < 41bp 0.903398994938848 0.6746151796074 0.8670788 0.32344952 prediction 0.457567630662897 Functional Loss - SPRR3 ENSG00000163209 CDS Human protein_coding chr1:152975584 chr1:152975586 nonsynonymous SNV 0.435 1 23 hm5C_associated_SNPs_75874 0 0 0 0 1 SPRR3 chr1:152975676 5'GT 152975676 Upstream 91bp
chr5 94027907 94027907 1 + G A STAD 94027904 + 94027884 94027924 41 TGGACGGGGTGACTCCTTTGCATGATGCACTGTCAAACGGA TGGACGGGGTGACTCCTTTGCATAATGCACTGTCAAACGGA < 41bp 0.728778751032778 0.493117197523453 0.5444817 0.27526903 prediction 0.457557502065555 Functional Loss - SLF1 ENSG00000133302 CDS Human protein_coding chr5:94027904 chr5:94027907 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_75878 0 0 1 0 1 SLF1 chr5:94027961 5'GT 94027961 Upstream 55bp
chr12 108011145 108011145 1 + G A SKCM 108011142 + 108011122 108011162 41 CCCCTGATAGGAACCATGTACAGGAATGGAATTTCTACAAC CCCCTGATAGGAACCATGTACAGAAATGGAATTTCTACAAC < 41bp 0.741632216278161 0.512855811744372 0.75131214 0.37872767 prediction 0.457552809067579 Functional Loss - BTBD11 ENSG00000151136 CDS Human protein_coding chr12:108011142 chr12:108011145 synonymous SNV . 0 24 hm5C_associated_SNPs_75879 0 0 0 0 2 BTBD11 chr12:108011078 3'AG 108011078 Downstream 68bp
chr12 108011145 108011145 1 + G A SKCM 108011142 + 108011122 108011162 41 CCCCTGATAGGAACCATGTACAGGAATGGAATTTCTACAAC CCCCTGATAGGAACCATGTACAGAAATGGAATTTCTACAAC < 41bp 0.741632216278161 0.512855811744372 0.75131214 0.37872767 prediction 0.457552809067579 Functional Loss - BTBD11 ENSG00000151136 CDS Human protein_coding chr12:108011142 chr12:108011145 synonymous SNV . 0 24 hm5C_associated_SNPs_75879 0 0 0 0 2 BTBD11 chr12:108011213 5'GT 108011213 Upstream 69bp
chr12 123339496 123339496 1 + G A UCEC 123339493 + 123339473 123339513 41 AAGGCCACAGGGACCGGTTCCACGAGCAGTTTCACAGGTAC AAGGCCACAGGGACCGGTTCCACAAGCAGTTTCACAGGTAC < 41bp 0.754701550320879 0.525925257625666 0.34339732 0.17876595 prediction 0.457552585390425 Functional Loss - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123339493 chr12:123339496 nonsynonymous SNV 0.988 2 24 hm5C_associated_SNPs_75880 0 0 0 0 2 HIP1R chr12:123339452 3'AG 123339452 Downstream 45bp
chr12 123339496 123339496 1 + G A UCEC 123339493 + 123339473 123339513 41 AAGGCCACAGGGACCGGTTCCACGAGCAGTTTCACAGGTAC AAGGCCACAGGGACCGGTTCCACAAGCAGTTTCACAGGTAC < 41bp 0.754701550320879 0.525925257625666 0.34339732 0.17876595 prediction 0.457552585390425 Functional Loss - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123339493 chr12:123339496 nonsynonymous SNV 0.988 2 24 hm5C_associated_SNPs_75880 0 0 0 0 2 HIP1R chr12:123339509 5'GT 123339509 Upstream 14bp
chr19 58189441 58189441 1 + G T UCEC 58189439 + 58189419 58189459 41 CCAAGATACTTCCTTAGAAACAGGACAAGGTAAGTCAGGTG CCAAGATACTTCCTTAGAAACATGACAAGGTAAGTCAGGTG < 41bp 0.886191156943772 0.657421429370386 0.32422534 0.046374023 prediction 0.457539455146772 Functional Loss - ZSCAN4 ENSG00000180532 CDS Human protein_coding chr19:58189439 chr19:58189441 stopgain 0.968 0 23 hm5C_associated_SNPs_75885 0 0 0 0 1 ZSCAN4 chr19:58189447 5'GT 58189447 Upstream 7bp
chr4 155490382 155490382 1 + G T LUSC 155490380 + 155490360 155490400 41 GACGGTAGTGTTGACTTTGGCAGGAAATGGGATCCATATAA GACGGTAGTGTTGACTTTGGCATGAAATGGGATCCATATAA < 41bp 0.893297417799944 0.664527956712152 0.90773 0.2835173 prediction 0.457538922175585 Functional Loss - FGB ENSG00000171564 CDS Human protein_coding chr4:155490380 chr4:155490382 nonsynonymous SNV 0.995 5 23 hm5C_associated_SNPs_75886 0 0 1 0 2 FGB chr4:155490334 3'AG 155490334 Downstream 49bp
chr4 155490382 155490382 1 + G T LUSC 155490380 + 155490360 155490400 41 GACGGTAGTGTTGACTTTGGCAGGAAATGGGATCCATATAA GACGGTAGTGTTGACTTTGGCATGAAATGGGATCCATATAA < 41bp 0.893297417799944 0.664527956712152 0.90773 0.2835173 prediction 0.457538922175585 Functional Loss - FGB ENSG00000171564 CDS Human protein_coding chr4:155490380 chr4:155490382 nonsynonymous SNV 0.995 5 23 hm5C_associated_SNPs_75886 0 0 1 0 2 FGB chr4:155490459 5'GT 155490459 Upstream 78bp
chr13 113508844 113508844 1 + G A BLCA 113508841 + 113508821 113508861 41 CCTGACCAGAGACAACCTGTCCGGGTAGGCAGCGCGTCCCC CCTGACCAGAGACAACCTGTCCGAGTAGGCAGCGCGTCCCC < 41bp 0.728766014596554 0.48564778884552 0.6820005 0.053209513 prediction 0.457532029193109 Functional Loss - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113508841 chr13:113508844 nonsynonymous SNV 0.119 1 24 hm5C_associated_SNPs_75889 0 0 1 0 1 ATP11A chr13:113508844 5'GT 113508844 Upstream 1bp
chr14 77229404 77229404 1 + C T UCEC 77229402 + 77229382 77229422 41 CCTGGGAAAGGATGTGGAAACACGTGGCCAAGATCCACCCC CCTGGGAAAGGATGTGGAAACATGTGGCCAAGATCCACCCC < 41bp 0.779933621624669 0.551170182472941 0.8002503 0.71446955 prediction 0.457526878303456 Functional Loss - VASH1 ENSG00000071246 CDS Human protein_coding chr14:77229402 chr14:77229404 synonymous SNV . 0 23 hm5C_associated_SNPs_75892 0 0 0 0 1 VASH1 chr14:77229473 5'GT 77229473 Upstream 70bp
chr17 72480172 72480172 1 + G A ESCA 72480169 + 72480149 72480189 41 AGGGAAGAACTTCACTATGCCTCGGTGGTGTTTGATTCTAA AGGGAAGAACTTCACTATGCCTCAGTGGTGTTTGATTCTAA < 41bp 0.760524127205154 0.531763238558979 0.020537645 0.028364986 prediction 0.457521777292351 Functional Loss - CD300A ENSG00000167851 CDS Human protein_coding chr17:72480169 chr17:72480172 synonymous SNV . 0 24 hm5C_associated_SNPs_75894 0 0 0 0 1 CD300A chr17:72480140 3'AG 72480140 Downstream 33bp
chr3 52239986 52239986 1 + C T GBM 52239984 + 52239964 52240004 41 GATGCCGCACTCTTGTTTTCCTCGTGCTTTGTGGCCAATGA GATGCCGCACTCTTGTTTTCCTTGTGCTTTGTGGCCAATGA < 41bp 0.728758924156636 0.438824172128878 0.157724 0.16107848 prediction 0.457517848313272 Functional Loss - ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52239984 chr3:52239986 nonsynonymous SNV 0.971 5 23 hm5C_associated_SNPs_75895 0 0 1 0 1 ALAS1 chr3:52240039 5'GT 52240039 Upstream 54bp
chr11 404048 404048 1 + T C UCEC 404047 + 404027 404067 41 TCATAGCTGTGCTCAACAACCTGGTGGTGGCCAGCCCCATC TCATAGCTGTGCTCAACAACCCGGTGGTGGCCAGCCCCATC < 41bp 0.784114727694527 0.555357437599477 0.25288713 0.52297497 prediction 0.4575145801901 Functional Loss - PKP3 ENSG00000184363 CDS Human protein_coding chr11:404047 chr11:404048 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_75897 0 0 0 0 1 PKP3 chr11:404135 5'GT 404135 Upstream 88bp
chr10 43600448 43600448 1 + C T UCEC 43600446 + 43600426 43600466 41 CCGGACAGCCTGGAGGTGAGCACGCGCTGGGCCCTGGACCG CCGGACAGCCTGGAGGTGAGCATGCGCTGGGCCCTGGACCG < 41bp 0.805143138283492 0.576387613487008 0.48503226 0.48926044 prediction 0.457511049592969 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43600446 chr10:43600448 nonsynonymous SNV 0.971 0 23 hm5C_associated_SNPs_75898 0 0 0 0 1 RET chr10:43600400 3'AG 43600400 Downstream 49bp
chr10 95338934 95338934 1 + G T GBM 95338931 + 95338911 95338951 41 TACAGACCTCGGAACACCTCCTGGATGCAAGAGCTGTCGTG TACAGACCTCGGAACACCTCCTGTATGCAAGAGCTGTCGTG < 41bp 0.728755097501491 0.344842634935789 0.34184387 0.109636605 prediction 0.457510195002982 Functional Loss - FFAR4 ENSG00000186188 CDS Human protein_coding chr10:95338931 chr10:95338934 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_75900 0 0 0 0 2 FFAR4 chr10:95338916 3'AG 95338916 Downstream 19bp
chr10 95338934 95338934 1 + G T GBM 95338931 + 95338911 95338951 41 TACAGACCTCGGAACACCTCCTGGATGCAAGAGCTGTCGTG TACAGACCTCGGAACACCTCCTGTATGCAAGAGCTGTCGTG < 41bp 0.728755097501491 0.344842634935789 0.34184387 0.109636605 prediction 0.457510195002982 Functional Loss - FFAR4 ENSG00000186188 CDS Human protein_coding chr10:95338931 chr10:95338934 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_75900 0 0 0 0 2 FFAR4 chr10:95338963 5'GT 95338963 Upstream 30bp
chr17 47886538 47886538 1 + G A GBM 47886535 + 47886515 47886555 41 AAAGGATGCTGTCTCACAGGCAAGATGACAACAACAGGCAT AAAGGATGCTGTCTCACAGGCAAAATGACAACAACAGGCAT < 41bp 0.748034670644009 0.519280019097819 0.2743024 0.09857449 prediction 0.457509303092379 Functional Loss - KAT7 ENSG00000136504 CDS Human protein_coding chr17:47886535 chr17:47886538 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_75902 0 0 1 0 2 KAT7 chr17:47886481 3'AG 47886481 Downstream 58bp
chr17 47886538 47886538 1 + G A GBM 47886535 + 47886515 47886555 41 AAAGGATGCTGTCTCACAGGCAAGATGACAACAACAGGCAT AAAGGATGCTGTCTCACAGGCAAAATGACAACAACAGGCAT < 41bp 0.748034670644009 0.519280019097819 0.2743024 0.09857449 prediction 0.457509303092379 Functional Loss - KAT7 ENSG00000136504 CDS Human protein_coding chr17:47886535 chr17:47886538 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_75902 0 0 1 0 2 KAT7 chr17:47886570 5'GT 47886570 Upstream 33bp
chr15 92988103 92988103 1 + C T UCEC 92988101 + 92988081 92988121 41 TCAACGAGCTTATCCTGAAGCACCACGTCAACGTGCGCACT TCAACGAGCTTATCCTGAAGCATCACGTCAACGTGCGCACT < 41bp 0.728752665045498 0.448564441917541 0.19650248 0.109493166 prediction 0.457505330090995 Functional Loss - ST8SIA2 ENSG00000140557 CDS Human protein_coding chr15:92988101 chr15:92988103 synonymous SNV . 0 23 hm5C_associated_SNPs_75903 0 0 0 0 1 ST8SIA2 chr15:92988159 5'GT 92988159 Upstream 57bp
chrX 47101902 47101902 1 + C T LGG 47101900 + 47101880 47101920 41 TGTGTGGCTCTGTCCAAACACACGGGCATCTCGCCAGAGAG TGTGTGGCTCTGTCCAAACACATGGGCATCTCGCCAGAGAG < 41bp 0.822950055569425 0.594197691814602 0.3230713 0.41624883 prediction 0.457504727509646 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47101900 chrX:47101902 nonsynonymous SNV 0.674 3 23 hm5C_associated_SNPs_75904 0 0 1 0 1 USP11 chrX:47101838 3'AG 47101838 Downstream 65bp
chr12 121434481 121434481 1 + G A LUSC 121434478 + 121434458 121434498 41 CTTCCTGGGGTCATGACCATCGGGCCTGGTGAGCCTGCCTC CTTCCTGGGGTCATGACCATCGGACCTGGTGAGCCTGCCTC < 41bp 0.777527433688708 0.548777511071169 0.90157187 0.8289238 prediction 0.457499845235079 Functional Loss - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121434478 chr12:121434481 synonymous SNV . 0 24 hm5C_associated_SNPs_75906 0 0 0 0 2 HNF1A chr12:121434420 3'AG 121434420 Downstream 62bp
chr12 121434481 121434481 1 + G A LUSC 121434478 + 121434458 121434498 41 CTTCCTGGGGTCATGACCATCGGGCCTGGTGAGCCTGCCTC CTTCCTGGGGTCATGACCATCGGACCTGGTGAGCCTGCCTC < 41bp 0.777527433688708 0.548777511071169 0.90157187 0.8289238 prediction 0.457499845235079 Functional Loss - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121434478 chr12:121434481 synonymous SNV . 0 24 hm5C_associated_SNPs_75906 0 0 0 0 2 HNF1A chr12:121434545 5'GT 121434545 Upstream 65bp
chr6 41757059 41757059 1 + G A COAD 41757056 + 41757036 41757076 41 TGACCTCATGGCACCTCAGCCAGGGGTGTAGCCAAGTAGGT TGACCTCATGGCACCTCAGCCAGAGGTGTAGCCAAGTAGGT < 41bp 0.741631465816348 0.512881699885304 0.92336166 0.90517056 prediction 0.457499531862088 Functional Loss - TOMM6 ENSG00000214736 CDS Human protein_coding chr6:41757056 chr6:41757059 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_75907 0 0 1 1 2 TOMM6 chr6:41756970 3'AG 41756970 Downstream 90bp
chr6 41757059 41757059 1 + G A COAD 41757056 + 41757036 41757076 41 TGACCTCATGGCACCTCAGCCAGGGGTGTAGCCAAGTAGGT TGACCTCATGGCACCTCAGCCAGAGGTGTAGCCAAGTAGGT < 41bp 0.741631465816348 0.512881699885304 0.92336166 0.90517056 prediction 0.457499531862088 Functional Loss - TOMM6 ENSG00000214736 CDS Human other chr6:41757056 chr6:41757059 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_75907 0 0 1 1 2 TOMM6 chr6:41757074 5'GT 41757074 Upstream 16bp
chr19 11022924 11022924 1 + G A UCEC 11022921 + 11022901 11022941 41 TTTTGCCGCCCAAGCTGGAGCACGGAAAATCTACGCGGTGG TTTTGCCGCCCAAGCTGGAGCACAGAAAATCTACGCGGTGG < 41bp 0.775579730064777 0.546832220841969 0.32916245 0.18707386 prediction 0.457495018445616 Functional Loss - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11022921 chr19:11022924 nonsynonymous SNV 0.985 2 24 hm5C_associated_SNPs_75908 0 0 1 2 1 CARM1 chr19:11022970 5'GT 11022970 Upstream 47bp
chr19 6750315 6750315 1 + G T BLCA 6750313 + 6750293 6750333 41 CTCCTCCCAGGCGTGGCTGGCAGAAGCTGAAAGTCGAGTCC CTCCTCCCAGGCGTGGCTGGCATAAGCTGAAAGTCGAGTCC < 41bp 0.728746057257455 0.362882778384647 0.8920547 0.32733572 prediction 0.457492114514909 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6750313 chr19:6750315 stopgain 0.997 1 23 hm5C_associated_SNPs_75909 0 0 1 0 1 TRIP10 chr19:6750303 3'AG 6750303 Downstream 13bp
chr2 61391524 61391524 1 + T C UCEC 61391523 + 61391503 61391543 41 GAAAATACACACATCTGTCACTAGAACTCCTTCAGTTGTTG GAAAATACACACATCTGTCACCAGAACTCCTTCAGTTGTTG < 41bp 0.728745644928163 0.499810355049644 0.07580164 0.12970734 prediction 0.457491289856325 Functional Loss - C2orf74 ENSG00000237651 CDS Human protein_coding chr2:61391523 chr2:61391524 synonymous SNV . 0 22 hm5C_associated_SNPs_75910 0 0 1 0 1 C2orf74 chr2:61391489 3'AG 61391489 Downstream 36bp
chr18 33738801 33738801 1 + G T BLCA 33738798 + 33738778 33738818 41 TATTATATTTTCTATTCTAGCAAGATAGTGATCTTCCAGAA TATTATATTTTCTATTCTAGCAATATAGTGATCTTCCAGAA < 41bp 0.728745179579069 0.363677233169209 0.43283683 0.10197067 prediction 0.457490359158139 Functional Loss - ELP2 ENSG00000134759 CDS Human protein_coding chr18:33738798 chr18:33738801 nonsynonymous SNV 0.096 0 24 hm5C_associated_SNPs_75912 0 0 1 1 1 ELP2 chr18:33738798 3'AG 33738798 Downstream 4bp
chr22 30762139 30762139 1 + C T rs41281641 30762137 + 30762117 30762157 41 CTGACCGCATGGCCTGTGACCTCGACATGGTGGCCCTGCTG CTGACCGCATGGCCTGTGACCTTGACATGGTGGCCCTGCTG < 41bp 0.844476597557105 0.615731666732384 0.9312334 0.57058865 prediction 0.457489861649442 Functional Loss - CCDC157 ENSG00000187860 CDS Human protein_coding chr22:30762137 chr22:30762139 synonymous SNV . 0 23 hm5C_associated_SNPs_75913 0 0 0 0 1 CCDC157 chr22:30762237 5'GT 30762237 Upstream 99bp
chr19 52443578 52443578 1 + C T UCEC 52443576 + 52443556 52443596 41 TGTTGGAGAACTATAGCAACCTCGTGTCAGTGGGTGAGGAC TGTTGGAGAACTATAGCAACCTTGTGTCAGTGGGTGAGGAC < 41bp 0.82202233954312 0.593277735562546 0.15677932 0.13643515 prediction 0.457489207961148 Functional Loss - ZNF613 ENSG00000176024 CDS Human protein_coding chr19:52443576 chr19:52443578 synonymous SNV . 0 23 hm5C_associated_SNPs_75914 0 0 0 0 1 ZNF613 chr19:52443588 5'GT 52443588 Upstream 11bp
chr21 45733838 45733838 1 + G T SARC 45733835 + 45733815 45733855 41 GCACTGGCCTCAGGGGCCGACTGGCTGTTCATCCCCGAGGC GCACTGGCCTCAGGGGCCGACTGTCTGTTCATCCCCGAGGC < 41bp 0.728738900547355 0.335701219824887 0.33565715 0.22736171 prediction 0.457477801094709 Functional Loss - PFKL ENSG00000141959 CDS Human protein_coding chr21:45733835 chr21:45733838 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_75917 0 0 1 0 2 PFKL chr21:45733796 3'AG 45733796 Downstream 43bp
chr21 45733838 45733838 1 + G T SARC 45733835 + 45733815 45733855 41 GCACTGGCCTCAGGGGCCGACTGGCTGTTCATCCCCGAGGC GCACTGGCCTCAGGGGCCGACTGTCTGTTCATCCCCGAGGC < 41bp 0.728738900547355 0.335701219824887 0.33565715 0.22736171 prediction 0.457477801094709 Functional Loss - PFKL ENSG00000141959 CDS Human protein_coding chr21:45733835 chr21:45733838 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_75917 0 0 1 0 2 PFKL chr21:45733904 5'GT 45733904 Upstream 67bp
chr19 18700384 18700384 1 + C T BLCA 18700382 + 18700362 18700402 41 ACCCAGGCCTTCGCCGCCGCCTCGCGGGAGGTGCTGGCGGT ACCCAGGCCTTCGCCGCCGCCTTGCGGGAGGTGCTGGCGGT < 41bp 0.795593803016903 0.566856167989337 0.19721958 0.18123826 prediction 0.457475270055131 Functional Loss - C19orf60 ENSG00000006015 CDS Human protein_coding chr19:18700382 chr19:18700384 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_75918 0 0 1 0 1 C19orf60 chr19:18700289 3'AG 18700289 Downstream 96bp
chr15 77770713 77770713 1 + C T UCEC 77770711 + 77770691 77770731 41 GGAATGCAGCCCTGCAAAAGCACGTGGAGAGCATGCGCACA GGAATGCAGCCCTGCAAAAGCATGTGGAGAGCATGCGCACA < 41bp 0.825951082495692 0.597216970067786 0.20979041 0.15183699 prediction 0.457468224855813 Functional Loss - HMG20A ENSG00000140382 CDS Human protein_coding chr15:77770711 chr15:77770713 synonymous SNV . 0 23 hm5C_associated_SNPs_75920 0 0 1 0 1 HMG20A chr15:77770637 3'AG 77770637 Downstream 77bp
chr3 131068497 131068497 1 + C T rs12637848 131068495 + 131068475 131068515 41 ATGCTAGCGAAGCAGAGATCCGCGAGTGTTTGGAAAAAGTG ATGCTAGCGAAGCAGAGATCCGTGAGTGTTTGGAAAAAGTG < 41bp 0.728729199709274 0.454879686968923 0.6482405 0.55248636 prediction 0.457458399418548 Functional Loss - NEK11 ENSG00000114670 CDS Human protein_coding chr3:131068495 chr3:131068497 nonsynonymous SNV 0.187 0 23 hm5C_associated_SNPs_75926 0 0 0 0 1 NEK11 chr3:131068401 3'AG 131068401 Downstream 97bp
chr19 17534839 17534839 1 + T C SKCM 17534838 + 17534818 17534858 41 TGGATGGGGTTCCCTTCACACTCCACCCACGATTTGAGGGC TGGATGGGGTTCCCTTCACACCCCACCCACGATTTGAGGGC < 41bp 0.828312514877701 0.599588017165284 0.89443505 0.03888595 prediction 0.457448995424833 Functional Loss - MVB12A ENSG00000141971 CDS Human protein_coding chr19:17534838 chr19:17534839 nonsynonymous SNV 0.984 4 22 hm5C_associated_SNPs_75930 0 0 1 0 2 MVB12A chr19:17534815 3'AG 17534815 Downstream 25bp
chr19 17534839 17534839 1 + T C SKCM 17534838 + 17534818 17534858 41 TGGATGGGGTTCCCTTCACACTCCACCCACGATTTGAGGGC TGGATGGGGTTCCCTTCACACCCCACCCACGATTTGAGGGC < 41bp 0.828312514877701 0.599588017165284 0.89443505 0.03888595 prediction 0.457448995424833 Functional Loss - MVB12A ENSG00000141971 CDS Human protein_coding chr19:17534838 chr19:17534839 nonsynonymous SNV 0.984 4 22 hm5C_associated_SNPs_75930 0 0 1 0 2 MVB12A chr19:17534876 5'GT 17534876 Upstream 38bp
chr14 68036693 68036693 1 + G A CESC 68036690 + 68036670 68036710 41 TCTTTCTCTGGCCTGGTCTACAAGAATGTCACTGTGCCTGT TCTTTCTCTGGCCTGGTCTACAAAAATGTCACTGTGCCTGT < 41bp 0.758783974765912 0.530060619641116 0.7857102 0.19012949 prediction 0.457446710249592 Functional Loss - PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68036690 chr14:68036693 synonymous SNV . 0 24 hm5C_associated_SNPs_75931 0 0 1 0 2 PLEKHH1 chr14:68036638 3'AG 68036638 Downstream 56bp
chr14 68036693 68036693 1 + G A CESC 68036690 + 68036670 68036710 41 TCTTTCTCTGGCCTGGTCTACAAGAATGTCACTGTGCCTGT TCTTTCTCTGGCCTGGTCTACAAAAATGTCACTGTGCCTGT < 41bp 0.758783974765912 0.530060619641116 0.7857102 0.19012949 prediction 0.457446710249592 Functional Loss - PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68036690 chr14:68036693 synonymous SNV . 0 24 hm5C_associated_SNPs_75931 0 0 1 0 2 PLEKHH1 chr14:68036729 5'GT 68036729 Upstream 37bp
chr3 49050759 49050759 1 + G A LGG 49050756 + 49050736 49050776 41 CCTACTACCAGCTGTTTGTACGAGACGGCCAGCTCCAGCCA CCTACTACCAGCTGTTTGTACGAAACGGCCAGCTCCAGCCA < 41bp 0.757867106436728 0.529147544535796 0.43005708 0.08393261 prediction 0.457439123801864 Functional Loss - WDR6 ENSG00000178252 CDS Human protein_coding chr3:49050756 chr3:49050759 nonsynonymous SNV 0.508 0 24 hm5C_associated_SNPs_75935 0 0 1 0 1 WDR6 chr3:49050724 3'AG 49050724 Downstream 36bp
chr1 13716867 13716867 1 + A C ESCA 13716863 + 13716843 13716883 41 GAATTTCTGGACTATATGGTCTGGAGCCAGGGCCCTCTCCT GAATTTCTGGACTATATGGTCTGGCGCCAGGGCCCTCTCCT < 41bp 0.931202115335306 0.702484937400003 0.34929985 0.5862493 prediction 0.457434355870606 Functional Loss - PRAMEF17 ENSG00000204479 CDS Human protein_coding chr1:13716863 chr1:13716867 synonymous SNV . 0 25 hm5C_associated_SNPs_75936 0 0 0 0 1 PRAMEF17 chr1:13716801 3'AG 13716801 Downstream 67bp
chrX 152685761 152685761 1 + G T ACC 152685758 + 152685738 152685778 41 ACCCTGGGTAGCAGACATCCCCAGAACCTGGGCCACCGCAG ACCCTGGGTAGCAGACATCCCCATAACCTGGGCCACCGCAG < 41bp 0.728715455530436 0.327559009765715 0.8207387 0.37313727 prediction 0.457430911060872 Functional Loss - ZFP92 ENSG00000189420 CDS Human protein_coding chrX:152685758 chrX:152685761 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_75937 0 0 0 0 2 ZFP92 chrX:152685686 3'AG 152685686 Downstream 76bp
chrX 152685761 152685761 1 + G T ACC 152685758 + 152685738 152685778 41 ACCCTGGGTAGCAGACATCCCCAGAACCTGGGCCACCGCAG ACCCTGGGTAGCAGACATCCCCATAACCTGGGCCACCGCAG < 41bp 0.728715455530436 0.327559009765715 0.8207387 0.37313727 prediction 0.457430911060872 Functional Loss - ZFP92 ENSG00000189420 CDS Human protein_coding chrX:152685758 chrX:152685761 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_75937 0 0 0 0 2 ZFP92 chrX:152685790 5'GT 152685790 Upstream 30bp
chr16 50763774 50763774 1 + G T HNSC 50763772 + 50763752 50763792 41 ACCTAGGGGCAGAAGCCCTCCTGCAGGCCCTTGAAAGGAAT ACCTAGGGGCAGAAGCCCTCCTTCAGGCCCTTGAAAGGAAT < 41bp 0.728715239895388 0.411978550530839 0.039089322 0.035615414 prediction 0.457430479790776 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50763772 chr16:50763774 synonymous SNV . 0 23 hm5C_associated_SNPs_75938 0 0 0 0 2 NOD2 chr16:50763729 3'AG 50763729 Downstream 46bp
chr16 50763774 50763774 1 + G T HNSC 50763772 + 50763752 50763792 41 ACCTAGGGGCAGAAGCCCTCCTGCAGGCCCTTGAAAGGAAT ACCTAGGGGCAGAAGCCCTCCTTCAGGCCCTTGAAAGGAAT < 41bp 0.728715239895388 0.411978550530839 0.039089322 0.035615414 prediction 0.457430479790776 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50763772 chr16:50763774 synonymous SNV . 0 23 hm5C_associated_SNPs_75938 0 0 0 0 2 NOD2 chr16:50763812 5'GT 50763812 Upstream 39bp
chr19 50905725 50905725 1 + C T rs76131127 50905723 + 50905703 50905743 41 CCCTCCAGGTTCATGGTGGACACGGACATCGTCGGCTGCAA CCCTCCAGGTTCATGGTGGACATGGACATCGTCGGCTGCAA < 41bp 0.801837013943032 0.573122041148808 0.3847888 0.5111069 prediction 0.457429945588448 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905723 chr19:50905725 nonsynonymous SNV 0.270 0 23 hm5C_associated_SNPs_75939 2 0 1 0 2 POLD1 chr19:50905711 3'AG 50905711 Downstream 15bp
chr19 50905725 50905725 1 + C T rs76131127 50905723 + 50905703 50905743 41 CCCTCCAGGTTCATGGTGGACACGGACATCGTCGGCTGCAA CCCTCCAGGTTCATGGTGGACATGGACATCGTCGGCTGCAA < 41bp 0.801837013943032 0.573122041148808 0.3847888 0.5111069 prediction 0.457429945588448 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905723 chr19:50905725 nonsynonymous SNV 0.270 0 23 hm5C_associated_SNPs_75939 2 0 1 0 2 POLD1 chr19:50905792 5'GT 50905792 Upstream 68bp
chr7 23224757 23224757 1 + T C LUAD 23224756 + 23224736 23224776 41 GTCATCCAGCCATCCAGTTTCTCCAAATCCACACCATGGGG GTCATCCAGCCATCCAGTTTCCCCAAATCCACACCATGGGG < 41bp 0.786012052651991 0.557297611177901 0.96649086 0.09211692 prediction 0.457428882948181 Functional Loss - NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23224756 chr7:23224757 nonsynonymous SNV 0.989 0 22 hm5C_associated_SNPs_75943 0 0 1 1 1 NUPL2 chr7:23224689 3'AG 23224689 Downstream 69bp
chr16 67680205 67680205 1 + G A rs201066611 67680202 + 67680182 67680222 41 ATCAAGAAGGTCTTCCCTCGCTCGACCCTTGGGTGAGGCCT ATCAAGAAGGTCTTCCCTCGCTCAACCCTTGGGTGAGGCCT < 41bp 0.770284326814952 0.541584340661038 0.027078032 0.020046264 prediction 0.457399972307828 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67680202 chr16:67680205 synonymous SNV . 0 24 hm5C_associated_SNPs_75950 0 0 0 0 1 CARMIL2 chr16:67680213 5'GT 67680213 Upstream 9bp
chr14 93125795 93125795 1 + C T SKCM 93125792 + 93125772 93125812 41 ACCTGCAAACTCATCTACGACTCCATGGCCCTCGGCAACCC ACCTGCAAACTCATCTACGACTCTATGGCCCTCGGCAACCC < 41bp 0.751125739602646 0.52242767179141 0.9566085 0.9261344 prediction 0.457396135622473 Functional Loss - RIN3 ENSG00000100599 CDS Human protein_coding chr14:93125792 chr14:93125795 synonymous SNV . 0 24 hm5C_associated_SNPs_75952 0 0 0 0 1 RIN3 chr14:93125814 5'GT 93125814 Upstream 20bp
chr16 1549266 1549266 1 + G A UCEC 1549263 + 1549243 1549283 41 TTTCGAGACTGCTGGGGAACCTGGTGGTGAAGAACAAGAAG TTTCGAGACTGCTGGGGAACCTGATGGTGAAGAACAAGAAG < 41bp 0.760659341330569 0.53196390286568 0.51463777 0.34669745 prediction 0.457390876929777 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1549263 chr16:1549266 nonsynonymous SNV 0.715 5 24 hm5C_associated_SNPs_75954 0 0 1 0 2 TELO2 chr16:1549232 3'AG 1549232 Downstream 35bp
chr16 1549266 1549266 1 + G A UCEC 1549263 + 1549243 1549283 41 TTTCGAGACTGCTGGGGAACCTGGTGGTGAAGAACAAGAAG TTTCGAGACTGCTGGGGAACCTGATGGTGAAGAACAAGAAG < 41bp 0.760659341330569 0.53196390286568 0.51463777 0.34669745 prediction 0.457390876929777 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1549263 chr16:1549266 nonsynonymous SNV 0.715 5 24 hm5C_associated_SNPs_75954 0 0 1 0 2 TELO2 chr16:1549334 5'GT 1549334 Upstream 69bp
chr9 27180345 27180345 1 + G A SKCM 27180342 + 27180322 27180362 41 GTCTCTGCTCTCCAGGATGGCAGGGGCTCCAGTGTGAGAGA GTCTCTGCTCTCCAGGATGGCAGAGGCTCCAGTGTGAGAGA < 41bp 0.771986354961959 0.543291400388866 0.9220119 0.90743846 prediction 0.457389909146185 Functional Loss - TEK ENSG00000120156 CDS Human protein_coding chr9:27180342 chr9:27180345 nonsynonymous SNV 0.756 4 24 hm5C_associated_SNPs_75956 0 0 0 0 2 TEK chr9:27180366 5'GT 27180366 Upstream 22bp
chr9 27180345 27180345 1 + G A SKCM 27180342 + 27180322 27180362 41 GTCTCTGCTCTCCAGGATGGCAGGGGCTCCAGTGTGAGAGA GTCTCTGCTCTCCAGGATGGCAGAGGCTCCAGTGTGAGAGA < 41bp 0.771986354961959 0.543291400388866 0.9220119 0.90743846 prediction 0.457389909146185 Functional Loss - TEK ENSG00000120156 CDS Human protein_coding chr9:27180342 chr9:27180345 nonsynonymous SNV 0.756 4 24 hm5C_associated_SNPs_75956 0 0 0 0 2 TEK chr9:27180376 5'GT 27180376 Upstream 32bp
chrX 47271825 47271825 1 + A T STAD 47271821 + 47271801 47271841 41 TTGGGGATAATGCCCTCAGGCATGATAATGACCTTCTTCAC TTGGGGATAATGCCCTCAGGCATGTTAATGACCTTCTTCAC < 41bp 0.728690930357989 0.421932493437543 0.08767083 0.08884776 prediction 0.457381860715978 Functional Loss - ZNF157 ENSG00000147117 CDS Human protein_coding chrX:47271821 chrX:47271825 nonsynonymous SNV 0.019 0 25 hm5C_associated_SNPs_75959 0 0 0 0 1 ZNF157 chrX:47271768 3'AG 47271768 Downstream 58bp
chr7 154875944 154875944 1 + C T UCEC 154875942 + 154875922 154875962 41 ACCTTCCAGCCAGAAGGGGACACGTGGCGGGAGCAGAAGGA ACCTTCCAGCCAGAAGGGGACATGTGGCGGGAGCAGAAGGA < 41bp 0.728687772684211 0.469743751713701 0.4329174 0.44637793 prediction 0.457375545368422 Functional Loss - HTR5A ENSG00000157219 CDS Human protein_coding chr7:154875942 chr7:154875944 nonsynonymous SNV 0.899 1 23 hm5C_associated_SNPs_75961 0 0 0 0 1 HTR5A chr7:154875865 3'AG 154875865 Downstream 80bp
chr15 41555047 41555047 1 + C T SKCM 41555045 + 41555025 41555065 41 AGAGCAAAGATGTGAATGGACCCGAACCACTCAACAGCCGA AGAGCAAAGATGTGAATGGACCTGAACCACTCAACAGCCGA < 41bp 0.728687398107316 0.437008751071334 0.051161915 0.0678395 prediction 0.457374796214632 Functional Loss - CHP1 ENSG00000187446 CDS Human protein_coding chr15:41555045 chr15:41555047 synonymous SNV . 0 23 hm5C_associated_SNPs_75962 0 0 1 0 2 CHP1 chr15:41554954 3'AG 41554954 Downstream 94bp
chr15 41555047 41555047 1 + C T SKCM 41555045 + 41555025 41555065 41 AGAGCAAAGATGTGAATGGACCCGAACCACTCAACAGCCGA AGAGCAAAGATGTGAATGGACCTGAACCACTCAACAGCCGA < 41bp 0.728687398107316 0.437008751071334 0.051161915 0.0678395 prediction 0.457374796214632 Functional Loss - CHP1 ENSG00000187446 CDS Human protein_coding chr15:41555045 chr15:41555047 synonymous SNV . 0 23 hm5C_associated_SNPs_75962 0 0 1 0 2 CHP1 chr15:41555081 5'GT 41555081 Upstream 35bp
chr20 2375867 2375867 1 + C T SKCM 2375865 + 2375845 2375885 41 CGGGCTTCTGAGGCCCTCCACACCAAAGCTGTGTTCCAGAC CGGGCTTCTGAGGCCCTCCACATCAAAGCTGTGTTCCAGAC < 41bp 0.728681560120052 0.447385433934499 0.23438641 0.30827296 prediction 0.457363120240104 Functional Loss - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2375865 chr20:2375867 nonsynonymous SNV 0.979 3 23 hm5C_associated_SNPs_75963 0 0 0 0 1 TGM6 chr20:2375840 3'AG 2375840 Downstream 28bp
chr2 70488475 70488475 1 + C T SKCM 70488472 + 70488452 70488492 41 GGCGCTATGGATTTCAATCCCTCCGTATGCACATGTGGGTA GGCGCTATGGATTTCAATCCCTCTGTATGCACATGTGGGTA < 41bp 0.731422348961396 0.502743454812691 0.040281683 0.02189523 prediction 0.457357788297411 Functional Loss - PCYOX1 ENSG00000116005 CDS Human protein_coding chr2:70488472 chr2:70488475 nonsynonymous SNV 0.872 4 24 hm5C_associated_SNPs_75964 0 0 1 0 1 PCYOX1 chr2:70488518 5'GT 70488518 Upstream 44bp
chr14 24633164 24633164 1 + G T LGG 24633162 + 24633142 24633182 41 GCAGCAGCAGCCCTGAGCCACAGGAAGGTACCACCTGCCCT GCAGCAGCAGCCCTGAGCCACATGAAGGTACCACCTGCCCT < 41bp 0.907628022171288 0.678949329582159 0.7645836 0.2653845 prediction 0.457357385178257 Functional Loss - IRF9 ENSG00000213928 CDS Human protein_coding chr14:24633162 chr14:24633164 nonsynonymous SNV 0.653 1 23 hm5C_associated_SNPs_75965 0 0 0 0 2 IRF9 chr14:24633087 3'AG 24633087 Downstream 78bp
chr14 24633164 24633164 1 + G T LGG 24633162 + 24633142 24633182 41 GCAGCAGCAGCCCTGAGCCACAGGAAGGTACCACCTGCCCT GCAGCAGCAGCCCTGAGCCACATGAAGGTACCACCTGCCCT < 41bp 0.907628022171288 0.678949329582159 0.7645836 0.2653845 prediction 0.457357385178257 Functional Loss - IRF9 ENSG00000213928 CDS Human protein_coding chr14:24633162 chr14:24633164 nonsynonymous SNV 0.653 1 23 hm5C_associated_SNPs_75965 0 0 0 0 2 IRF9 chr14:24633168 5'GT 24633168 Upstream 5bp
chr14 56757077 56757077 1 + C T SKCM 56757075 + 56757055 56757095 41 ATGCATCCACGAGGGGGCTTCACCGAGGAGTCCCAGCCCGG ATGCATCCACGAGGGGGCTTCATCGAGGAGTCCCAGCCCGG < 41bp 0.728677330922063 0.445176573752013 0.30228466 0.2912364 prediction 0.457354661844125 Functional Loss - PELI2 ENSG00000139946 CDS Human protein_coding chr14:56757075 chr14:56757077 nonsynonymous SNV 0.993 1 23 hm5C_associated_SNPs_75966 0 0 0 0 2 PELI2 chr14:56756986 3'AG 56756986 Downstream 92bp
chr14 56757077 56757077 1 + C T SKCM 56757075 + 56757055 56757095 41 ATGCATCCACGAGGGGGCTTCACCGAGGAGTCCCAGCCCGG ATGCATCCACGAGGGGGCTTCATCGAGGAGTCCCAGCCCGG < 41bp 0.728677330922063 0.445176573752013 0.30228466 0.2912364 prediction 0.457354661844125 Functional Loss - PELI2 ENSG00000139946 CDS Human protein_coding chr14:56757075 chr14:56757077 nonsynonymous SNV 0.993 1 23 hm5C_associated_SNPs_75966 0 0 0 0 2 PELI2 chr14:56757174 5'GT 56757174 Upstream 98bp
chrX 154004501 154004501 1 + C T CESC 154004499 + 154004479 154004519 41 GAGTGAAAGTGACGAGACTCCTCCAGCAGCTCCTCAGTTGA GAGTGAAAGTGACGAGACTCCTTCAGCAGCTCCTCAGTTGA < 41bp 0.865464479519631 0.636788262610833 0.9466933 0.029080182 prediction 0.457352433817596 Functional Loss - DKC1 ENSG00000130826 CDS Human protein_coding chrX:154004499 chrX:154004501 nonsynonymous SNV 0.006 1 23 hm5C_associated_SNPs_75967 0 0 1 0 2 DKC1 chrX:154004462 3'AG 154004462 Downstream 40bp
chrX 154004501 154004501 1 + C T CESC 154004499 + 154004479 154004519 41 GAGTGAAAGTGACGAGACTCCTCCAGCAGCTCCTCAGTTGA GAGTGAAAGTGACGAGACTCCTTCAGCAGCTCCTCAGTTGA < 41bp 0.865464479519631 0.636788262610833 0.9466933 0.029080182 prediction 0.457352433817596 Functional Loss - DKC1 ENSG00000130826 CDS Human protein_coding chrX:154004499 chrX:154004501 nonsynonymous SNV 0.006 1 23 hm5C_associated_SNPs_75967 0 0 1 0 2 DKC1 chrX:154004599 5'GT 154004599 Upstream 99bp
chr5 148697298 148697298 1 + T C STAD 148697297 + 148697277 148697317 41 CATTGTCTCCTCCAGGCTACCTGAACGTGCTGGTGAACCAG CATTGTCTCCTCCAGGCTACCCGAACGTGCTGGTGAACCAG < 41bp 0.728662781091698 0.465123754659666 0.18655711 0.084340364 prediction 0.457325562183397 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148697297 chr5:148697298 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_75975 0 0 0 0 1 AFAP1L1 chr5:148697292 3'AG 148697292 Downstream 7bp
chr5 148695801 148695801 1 + C T SKCM 148695799 + 148695779 148695819 41 ATCACCCGTATCATTGGCTTCTCCAAGAAGAAGACACTGGC ATCACCCGTATCATTGGCTTCTTCAAGAAGAAGACACTGGC < 41bp 0.728658641172667 0.411748987041833 0.9603156 0.09395057 prediction 0.457317282345335 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148695799 chr5:148695801 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_75977 0 0 0 0 2 AFAP1L1 chr5:148695714 3'AG 148695714 Downstream 88bp
chr5 148695801 148695801 1 + C T SKCM 148695799 + 148695779 148695819 41 ATCACCCGTATCATTGGCTTCTCCAAGAAGAAGACACTGGC ATCACCCGTATCATTGGCTTCTTCAAGAAGAAGACACTGGC < 41bp 0.728658641172667 0.411748987041833 0.9603156 0.09395057 prediction 0.457317282345335 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148695799 chr5:148695801 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_75977 0 0 0 0 2 AFAP1L1 chr5:148695866 5'GT 148695866 Upstream 66bp
chr10 70998847 70998847 1 + A C UCEC 70998843 + 70998823 70998863 41 AGTTTAAGGCACGAGGAGTTCAGGACACGGATGTGGTGAGC AGTTTAAGGCACGAGGAGTTCAGGCCACGGATGTGGTGAGC < 41bp 0.93641117250771 0.70775358867933 0.48706776 0.43375257 prediction 0.45731516765676 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:70998843 chr10:70998847 nonsynonymous SNV 0.909 3 25 hm5C_associated_SNPs_75978 0 0 0 0 1 HKDC1 chr10:70998893 5'GT 70998893 Upstream 47bp
chr2 220370984 220370984 1 + G T LUSC 220370981 + 220370961 220371001 41 TGTCCTCTTTGGCAGGAGCACACGTGTGTTCTGCATAGCAT TGTCCTCTTTGGCAGGAGCACACTTGTGTTCTGCATAGCAT < 41bp 0.728645201445338 0.332040539845137 0.4885567 0.29969826 prediction 0.457290402890676 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220370981 chr2:220370984 synonymous SNV . 0 24 hm5C_associated_SNPs_75983 0 0 0 0 1 GMPPA chr2:220370976 3'AG 220370976 Downstream 9bp
chr6 35391746 35391746 1 + G T LUAD 35391743 + 35391723 35391763 41 CTATCCGTTTTGGTCGGATGCCGGAGGCTGAGAAGAGGAAG CTATCCGTTTTGGTCGGATGCCGTAGGCTGAGAAGAGGAAG < 41bp 0.728637419040574 0.333271502351738 0.8646779 0.2997532 prediction 0.457274838081147 Functional Loss - PPARD ENSG00000112033 CDS Human protein_coding chr6:35391743 chr6:35391746 stopgain 0.976 1 24 hm5C_associated_SNPs_75986 0 0 1 1 1 PPARD chr6:35391723 3'AG 35391723 Downstream 24bp
chr11 117153235 117153235 1 + G A HNSC 117153232 + 117153212 117153252 41 CACGACTGGCAGAACATGAGCGGGTGGCAGCAAGTACTCAG CACGACTGGCAGAACATGAGCGGATGGCAGCAAGTACTCAG < 41bp 0.755206066051495 0.52657350034438 0.88254505 0.87129605 prediction 0.45726513141423 Functional Loss - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117153232 chr11:117153235 nonsynonymous SNV 0.990 0 24 hm5C_associated_SNPs_75988 0 0 0 0 1 RNF214 chr11:117153252 5'GT 117153252 Upstream 18bp
chr12 119916930 119916930 1 + G A SKCM 119916927 + 119916907 119916947 41 ATGATGAGAAGTTGAAGACACTGGGAGCTAGAGTCACACGT ATGATGAGAAGTTGAAGACACTGAGAGCTAGAGTCACACGT < 41bp 0.783377772832375 0.554745895608831 0.27002746 0.09112269 prediction 0.457263754447089 Functional Loss - CCDC60 ENSG00000183273 CDS Human protein_coding chr12:119916927 chr12:119916930 nonsynonymous SNV 0.031 0 24 hm5C_associated_SNPs_75989 0 0 0 0 2 CCDC60 chr12:119916899 3'AG 119916899 Downstream 32bp
chr12 119916930 119916930 1 + G A SKCM 119916927 + 119916907 119916947 41 ATGATGAGAAGTTGAAGACACTGGGAGCTAGAGTCACACGT ATGATGAGAAGTTGAAGACACTGAGAGCTAGAGTCACACGT < 41bp 0.783377772832375 0.554745895608831 0.27002746 0.09112269 prediction 0.457263754447089 Functional Loss - CCDC60 ENSG00000183273 CDS Human protein_coding chr12:119916927 chr12:119916930 nonsynonymous SNV 0.031 0 24 hm5C_associated_SNPs_75989 0 0 0 0 2 CCDC60 chr12:119917006 5'GT 119917006 Upstream 77bp
chr8 136561083 136561083 1 + T C STAD 136561082 + 136561062 136561102 41 CATTGAAGTGTTTGCCCCACCTGCAGAAGCTTATGCCAGGA CATTGAAGTGTTTGCCCCACCCGCAGAAGCTTATGCCAGGA < 41bp 0.82389985618025 0.595269746140943 0.15049887 0.08151454 prediction 0.457260220078614 Functional Loss - KHDRBS3 ENSG00000131773 CDS Human protein_coding chr8:136561082 chr8:136561083 synonymous SNV . 0 22 hm5C_associated_SNPs_75990 0 0 1 0 2 KHDRBS3 chr8:136560997 3'AG 136560997 Downstream 87bp
chr8 136561083 136561083 1 + T C STAD 136561082 + 136561062 136561102 41 CATTGAAGTGTTTGCCCCACCTGCAGAAGCTTATGCCAGGA CATTGAAGTGTTTGCCCCACCCGCAGAAGCTTATGCCAGGA < 41bp 0.82389985618025 0.595269746140943 0.15049887 0.08151454 prediction 0.457260220078614 Functional Loss - KHDRBS3 ENSG00000131773 CDS Human protein_coding chr8:136561082 chr8:136561083 synonymous SNV . 0 22 hm5C_associated_SNPs_75990 0 0 1 0 2 KHDRBS3 chr8:136561143 5'GT 136561143 Upstream 61bp
chrX 36091441 36091441 1 + G T OV 36091439 + 36091419 36091459 41 GTTCAGTCTCTTTGGCTGGCCTGAAGGACCCCATTCTTTTT GTTCAGTCTCTTTGGCTGGCCTTAAGGACCCCATTCTTTTT < 41bp 0.728628554914628 0.389990604283856 0.045502752 0.027449071 prediction 0.457257109829256 Functional Loss - CFAP47 ENSG00000176034 CDS Human other chrX:36091439 chrX:36091441 stopgain 0.993 0 23 hm5C_associated_SNPs_75993 0 0 0 0 1 CFAP47 chrX:36091481 5'GT 36091481 Upstream 41bp
chr20 43945416 43945416 1 + G A BLCA 43945413 + 43945393 43945433 41 CGCGCTCCCATCACAATCCCCATGAGCCTGGTGCGCGCCGA CGCGCTCCCATCACAATCCCCATAAGCCTGGTGCGCGCCGA < 41bp 0.746374081085058 0.517745979809535 0.17653745 0.16647264 prediction 0.457256202551044 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43945413 chr20:43945416 nonsynonymous SNV 0.872 0 24 hm5C_associated_SNPs_75994 0 0 0 0 1 RBPJL chr20:43945326 3'AG 43945326 Downstream 91bp
chrX 153492764 153492764 1 + G T rs782024115 153492761 + 153492741 153492781 41 TTTGATGCCAAGCTGGCCATCGTGGGCATTGCCTTCTCCTG TTTGATGCCAAGCTGGCCATCGTTGGCATTGCCTTCTCCTG < 41bp 0.728625697838006 0.313705226912435 0.9022522 0.28743058 prediction 0.457251395676011 Functional Loss - OPN1MW;OPN1MW2;OPN1MW3 ENSG00000166160 CDS Human protein_coding chrX:153492761 chrX:153492764 synonymous SNV . 0 24 hm5C_associated_SNPs_75996 0 0 0 0 1 OPN1MW;OPN1MW2;OPN1MW3 chrX:153492829 5'GT 153492829 Upstream 66bp
chr17 27075363 27075363 1 + G T STAD 27075361 + 27075341 27075381 41 TGATGCGGCGGCTGCTGGCCCAGCATGCCACCTCTGAGTGC TGATGCGGCGGCTGCTGGCCCATCATGCCACCTCTGAGTGC < 41bp 0.899298125100941 0.670680859767454 0.14728516 0.28180942 prediction 0.457234530666975 Functional Loss - TRAF4 ENSG00000076604 CDS Human protein_coding chr17:27075361 chr17:27075363 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_75999 0 0 1 0 2 TRAF4 chr17:27075280 3'AG 27075280 Downstream 84bp
chr17 27075363 27075363 1 + G T STAD 27075361 + 27075341 27075381 41 TGATGCGGCGGCTGCTGGCCCAGCATGCCACCTCTGAGTGC TGATGCGGCGGCTGCTGGCCCATCATGCCACCTCTGAGTGC < 41bp 0.899298125100941 0.670680859767454 0.14728516 0.28180942 prediction 0.457234530666975 Functional Loss - TRAF4 ENSG00000076604 CDS Human protein_coding chr17:27075361 chr17:27075363 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_75999 0 0 1 0 2 TRAF4 chr17:27075441 5'GT 27075441 Upstream 79bp
chr2 135922214 135922214 1 + G A BLCA 135922211 + 135922191 135922231 41 TGAAGTGTTAGTCACCGGTGCAGGAAGAGGACATGCTGGCA TGAAGTGTTAGTCACCGGTGCAGAAAGAGGACATGCTGGCA < 41bp 0.768041958104599 0.539428047135897 0.7229712 0.17471895 prediction 0.457227821937403 Functional Loss - RAB3GAP1 ENSG00000115839 CDS Human protein_coding chr2:135922211 chr2:135922214 nonsynonymous SNV 0.968 3 24 hm5C_associated_SNPs_76000 0 0 1 0 1 RAB3GAP1 chr2:135922164 3'AG 135922164 Downstream 51bp
chr15 22928193 22928193 1 + G A LUSC 22928190 + 22928170 22928210 41 GTACACCTGGAGGAGCTGCTCCCGGGCCATCCCACAGGTGC GTACACCTGGAGGAGCTGCTCCCAGGCCATCCCACAGGTGC < 41bp 0.728610653276418 0.482668246145113 0.33290386 0.078680515 prediction 0.457221306552836 Functional Loss - CYFIP1 ENSG00000068793 CDS Human other chr15:22928190 chr15:22928193 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_76001 0 0 1 0 2 CYFIP1 chr15:22928129 3'AG 22928129 Downstream 65bp
chr15 22928193 22928193 1 + G A LUSC 22928190 + 22928170 22928210 41 GTACACCTGGAGGAGCTGCTCCCGGGCCATCCCACAGGTGC GTACACCTGGAGGAGCTGCTCCCAGGCCATCCCACAGGTGC < 41bp 0.728610653276418 0.482668246145113 0.33290386 0.078680515 prediction 0.457221306552836 Functional Loss - CYFIP1 ENSG00000068793 CDS Human other chr15:22928190 chr15:22928193 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_76001 0 0 1 0 2 CYFIP1 chr15:22928206 5'GT 22928206 Upstream 14bp
chr10 74658714 74658714 1 + G A COAD 74658711 + 74658691 74658731 41 AACTGCTGTCTCTGGAACACCACGGTGGAAGTCAAGGCTTG AACTGCTGTCTCTGGAACACCACAGTGGAAGTCAAGGCTTG < 41bp 0.77290708478014 0.54429774594217 0.29773402 0.22609723 prediction 0.457218677675939 Functional Loss - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74658711 chr10:74658714 synonymous SNV . 0 24 hm5C_associated_SNPs_76002 0 0 0 0 1 OIT3 chr10:74658796 5'GT 74658796 Upstream 83bp
chr18 29645891 29645891 1 + C T UCEC 29645889 + 29645869 29645909 41 GTCCACTTTGCCGTTTAATACCCGATGAGAATCCAAGCAGC GTCCACTTTGCCGTTTAATACCTGATGAGAATCCAAGCAGC < 41bp 0.728606746913349 0.436288298475898 0.46851814 0.2639379 prediction 0.457213493826697 Functional Loss - RNF125 ENSG00000101695 CDS Human protein_coding chr18:29645889 chr18:29645891 synonymous SNV . 0 23 hm5C_associated_SNPs_76003 0 0 0 0 2 RNF125 chr18:29645865 3'AG 29645865 Downstream 27bp
chr18 29645891 29645891 1 + C T UCEC 29645889 + 29645869 29645909 41 GTCCACTTTGCCGTTTAATACCCGATGAGAATCCAAGCAGC GTCCACTTTGCCGTTTAATACCTGATGAGAATCCAAGCAGC < 41bp 0.728606746913349 0.436288298475898 0.46851814 0.2639379 prediction 0.457213493826697 Functional Loss - RNF125 ENSG00000101695 CDS Human protein_coding chr18:29645889 chr18:29645891 synonymous SNV . 0 23 hm5C_associated_SNPs_76003 0 0 0 0 2 RNF125 chr18:29645972 5'GT 29645972 Upstream 82bp
chr2 239234538 239234538 1 + G A STAD 239234535 + 239234515 239234555 41 GCCACTGTTGGCCAAACCAGCCCGAATCGTGGCGGGGCATG GCCACTGTTGGCCAAACCAGCCCAAATCGTGGCGGGGCATG < 41bp 0.728605384845797 0.483650659811481 0.27200526 0.14165571 prediction 0.457210769691593 Functional Loss - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239234535 chr2:239234538 nonsynonymous SNV 0.590 4 24 hm5C_associated_SNPs_76004 0 0 1 0 2 TRAF3IP1 chr2:239234450 3'AG 239234450 Downstream 89bp
chr2 239234538 239234538 1 + G A STAD 239234535 + 239234515 239234555 41 GCCACTGTTGGCCAAACCAGCCCGAATCGTGGCGGGGCATG GCCACTGTTGGCCAAACCAGCCCAAATCGTGGCGGGGCATG < 41bp 0.728605384845797 0.483650659811481 0.27200526 0.14165571 prediction 0.457210769691593 Functional Loss - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239234535 chr2:239234538 nonsynonymous SNV 0.590 4 24 hm5C_associated_SNPs_76004 0 0 1 0 2 TRAF3IP1 chr2:239234611 5'GT 239234611 Upstream 74bp
chr16 90160831 90160831 1 + G A rs8048909 90160828 + 90160808 90160848 41 ACAGCCACCTGCCGCTGGAGCGCGTCAACGTGCACCACCGC ACAGCCACCTGCCGCTGGAGCGCATCAACGTGCACCACCGC < 41bp 0.762520293150516 0.5339163802244 0.3890304 0.32682794 prediction 0.457207825852231 Functional Loss - PRDM7;FAM157B ENSG00000261812 CDS Human transcribed_unprocessed_pseudogene chr16:90160828 chr16:90160831 unknown . 0 24 hm5C_associated_SNPs_76006 0 0 0 0 2 PRDM7;FAM157B chr16:90160750 3'AG 90160750 Downstream 82bp
chr16 90160831 90160831 1 + G A rs8048909 90160828 + 90160808 90160848 41 ACAGCCACCTGCCGCTGGAGCGCGTCAACGTGCACCACCGC ACAGCCACCTGCCGCTGGAGCGCATCAACGTGCACCACCGC < 41bp 0.762520293150516 0.5339163802244 0.3890304 0.32682794 prediction 0.457207825852231 Functional Loss - PRDM7;FAM157B ENSG00000261812 CDS Human transcribed_unprocessed_pseudogene chr16:90160828 chr16:90160831 unknown . 0 24 hm5C_associated_SNPs_76006 0 0 0 0 2 PRDM7;FAM157B chr16:90160858 5'GT 90160858 Upstream 28bp
chr8 118543009 118543009 1 + G T LUSC 118543007 + 118542987 118543027 41 ATGGCTCAAAGAATGATGATCGGGCTGGCCCACCTCGTTTT ATGGCTCAAAGAATGATGATCGTGCTGGCCCACCTCGTTTT < 41bp 0.728603883853846 0.380429252442764 0.55844104 0.06389892 prediction 0.457207767707692 Functional Loss - MED30 ENSG00000164758 CDS Human protein_coding chr8:118543007 chr8:118543009 synonymous SNV . 0 23 hm5C_associated_SNPs_76007 0 0 1 0 2 MED30 chr8:118542962 3'AG 118542962 Downstream 48bp
chr8 118543009 118543009 1 + G T LUSC 118543007 + 118542987 118543027 41 ATGGCTCAAAGAATGATGATCGGGCTGGCCCACCTCGTTTT ATGGCTCAAAGAATGATGATCGTGCTGGCCCACCTCGTTTT < 41bp 0.728603883853846 0.380429252442764 0.55844104 0.06389892 prediction 0.457207767707692 Functional Loss - MED30 ENSG00000164758 CDS Human protein_coding chr8:118543007 chr8:118543009 synonymous SNV . 0 23 hm5C_associated_SNPs_76007 0 0 1 0 2 MED30 chr8:118543066 5'GT 118543066 Upstream 58bp
chr17 78081619 78081619 1 + G A UCEC 78081616 + 78081596 78081636 41 CAGCCCGGTGCGAACCTCTACGGGTCTCACCCTTTCTACCT CAGCCCGGTGCGAACCTCTACGGATCTCACCCTTTCTACCT < 41bp 0.787223436114129 0.558621269073742 0.2682339 0.122764945 prediction 0.457204334080774 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78081616 chr17:78081619 synonymous SNV . 0 24 hm5C_associated_SNPs_76008 0 0 1 0 2 GAA chr17:78081599 3'AG 78081599 Downstream 21bp
chr17 78081619 78081619 1 + G A UCEC 78081616 + 78081596 78081636 41 CAGCCCGGTGCGAACCTCTACGGGTCTCACCCTTTCTACCT CAGCCCGGTGCGAACCTCTACGGATCTCACCCTTTCTACCT < 41bp 0.787223436114129 0.558621269073742 0.2682339 0.122764945 prediction 0.457204334080774 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78081616 chr17:78081619 synonymous SNV . 0 24 hm5C_associated_SNPs_76008 0 0 1 0 2 GAA chr17:78081695 5'GT 78081695 Upstream 77bp
chr2 242109206 242109206 1 + C T rs116243166 242109204 + 242109184 242109224 41 TCCTTCTTTTAGAACAAACTCACGATGTTGGACATTGCATC TCCTTCTTTTAGAACAAACTCATGATGTTGGACATTGCATC < 41bp 0.728601084824574 0.44006922902895 0.057533145 0.12673005 prediction 0.457202169649147 Functional Loss - PPP1R7 ENSG00000115685 CDS Human protein_coding chr2:242109204 chr2:242109206 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_76009 0 0 0 0 1 PPP1R7 chr2:242109196 3'AG 242109196 Downstream 11bp
chr19 50208370 50208370 1 + C T UCEC 50208368 + 50208348 50208388 41 CTGAACCGCCAGGAGATACCCCCGGTGAGAGGGCCCCAGTG CTGAACCGCCAGGAGATACCCCTGGTGAGAGGGCCCCAGTG < 41bp 0.788451459741778 0.559855088339012 0.5291859 0.33995983 prediction 0.457192742805531 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50208368 chr19:50208370 nonsynonymous SNV 0.047 4 23 hm5C_associated_SNPs_76011 0 0 0 0 2 CPT1C chr19:50208297 3'AG 50208297 Downstream 74bp
chr19 50208370 50208370 1 + C T UCEC 50208368 + 50208348 50208388 41 CTGAACCGCCAGGAGATACCCCCGGTGAGAGGGCCCCAGTG CTGAACCGCCAGGAGATACCCCTGGTGAGAGGGCCCCAGTG < 41bp 0.788451459741778 0.559855088339012 0.5291859 0.33995983 prediction 0.457192742805531 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50208368 chr19:50208370 nonsynonymous SNV 0.047 4 23 hm5C_associated_SNPs_76011 0 0 0 0 2 CPT1C chr19:50208371 5'GT 50208371 Upstream 2bp
chr19 50920507 50920507 1 + G A BLCA 50920504 + 50920484 50920524 41 AGCGCTGCCAGGGCAGCCTGCACGAGGACGTCATCTGCACC AGCGCTGCCAGGGCAGCCTGCACAAGGACGTCATCTGCACC < 41bp 0.775181121895414 0.546592196197331 0.4514175 0.1110166 prediction 0.457177851396164 Functional Loss - POLD1 ENSG00000062822;ENSG00000142539 CDS Human other chr19:50920504 chr19:50920507 nonsynonymous SNV 0.846 1 24 hm5C_associated_SNPs_76015 0 0 1 0 2 POLD1 chr19:50920429 3'AG 50920429 Downstream 79bp
chr19 50920507 50920507 1 + G A BLCA 50920504 + 50920484 50920524 41 AGCGCTGCCAGGGCAGCCTGCACGAGGACGTCATCTGCACC AGCGCTGCCAGGGCAGCCTGCACAAGGACGTCATCTGCACC < 41bp 0.775181121895414 0.546592196197331 0.4514175 0.1110166 prediction 0.457177851396164 Functional Loss - POLD1 ENSG00000062822;ENSG00000142539 CDS Human other chr19:50920504 chr19:50920507 nonsynonymous SNV 0.846 1 24 hm5C_associated_SNPs_76015 0 0 1 0 2 POLD1 chr19:50920526 5'GT 50920526 Upstream 20bp
chr4 95204388 95204388 1 + A T LUSC 95204384 + 95204364 95204404 41 CAGCAAATGTTGTTATACTTCACGATATTGACTGTAATCCT CAGCAAATGTTGTTATACTTCACGTTATTGACTGTAATCCT < 41bp 0.728572979230018 0.398566833715088 0.029635996 0.052220374 prediction 0.457145958460036 Functional Loss - SMARCAD1 ENSG00000163104 CDS Human protein_coding chr4:95204384 chr4:95204388 nonsynonymous SNV 0.993 5 25 hm5C_associated_SNPs_76019 0 0 1 0 1 SMARCAD1 chr4:95204454 5'GT 95204454 Upstream 67bp
chr3 108396404 108396404 1 + C T SKCM 108396402 + 108396382 108396422 41 ATTTGCCTTGAGTACCTTGCCTCCAGTCCAGCTTCCTCCTC ATTTGCCTTGAGTACCTTGCCTTCAGTCCAGCTTCCTCCTC < 41bp 0.869121774394071 0.640555828014781 0.95187074 0.20407078 prediction 0.45713189275858 Functional Loss - DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108396402 chr3:108396404 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_76023 0 0 0 0 2 DZIP3 chr3:108396344 3'AG 108396344 Downstream 61bp
chr3 108396404 108396404 1 + C T SKCM 108396402 + 108396382 108396422 41 ATTTGCCTTGAGTACCTTGCCTCCAGTCCAGCTTCCTCCTC ATTTGCCTTGAGTACCTTGCCTTCAGTCCAGCTTCCTCCTC < 41bp 0.869121774394071 0.640555828014781 0.95187074 0.20407078 prediction 0.45713189275858 Functional Loss - DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108396402 chr3:108396404 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_76023 0 0 0 0 2 DZIP3 chr3:108396445 5'GT 108396445 Upstream 42bp
chr7 55240808 55240808 1 + G T UCEC 55240806 + 55240786 55240826 41 GCACGCTGCGGAGGCTGCTGCAGGAGAGGGAGGTGAGTGCC GCACGCTGCGGAGGCTGCTGCATGAGAGGGAGGTGAGTGCC < 41bp 0.898854710307431 0.670289697460803 0.91433626 0.8259419 prediction 0.457130025693256 Functional Loss - EGFR ENSG00000146648 CDS Human protein_coding chr7:55240806 chr7:55240808 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_76024 0 0 1 0 1 EGFR chr7:55240817 5'GT 55240817 Upstream 10bp
chr1 226026412 226026412 1 + C T rs373688139 226026410 + 226026390 226026430 41 CAGCTGCCCGCAGGCCATACCCCGAAGCCCTTGCTGATGGT CAGCTGCCCGCAGGCCATACCCTGAAGCCCTTGCTGATGGT < 41bp 0.728562384219361 0.436501254827305 0.07041067 0.08616719 prediction 0.457124768438722 Functional Loss - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226026410 chr1:226026412 nonsynonymous SNV 0.112 0 23 hm5C_associated_SNPs_76026 0 0 1 0 1 EPHX1 chr1:226026355 3'AG 226026355 Downstream 58bp
chr2 3623248 3623248 1 + G A LGG 3623245 + 3623225 3623265 41 TGAAGCCCAATGGCGAGAAGCCGGACGAGTTCGAGTCCGGC TGAAGCCCAATGGCGAGAAGCCGAACGAGTTCGAGTCCGGC < 41bp 0.736801771230586 0.508239455494605 0.65803087 0.71330625 prediction 0.457124631471961 Functional Loss - RPS7 ENSG00000171863 CDS Human protein_coding chr2:3623245 chr2:3623248 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_76027 0 0 1 0 1 RPS7 chr2:3623274 5'GT 3623274 Upstream 27bp
chr4 109088804 109088804 1 - C A UCEC 109088807 - 109088787 109088827 41 CAGAAGGAAAAGATCTTCGCCGAGATCAGTCATCCCGAAGA CAGAAGGAAAAGATCTTCGCCGATATCAGTCATCCCGAAGA < 41bp 0.728562058207446 0.34787114431566 0.436755 0.13013646 prediction 0.457124116414892 Functional Loss - LEF1 ENSG00000138795 CDS Human protein_coding chr4:109088807 chr4:109088804 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_76028 0 0 0 0 1 LEF1 chr4:109088711 5'GT 109088711 Upstream 94bp
chrX 69644849 69644849 1 + C T UCEC 69644847 + 69644827 69644867 41 CCTTCACCATGGCCGAGTCCCCCGGCTGCTGCTCCGTCTGG CCTTCACCATGGCCGAGTCCCCTGGCTGCTGCTCCGTCTGG < 41bp 0.728556806159766 0.481834424997263 0.14521673 0.06695518 prediction 0.457113612319532 Functional Loss - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69644847 chrX:69644849 synonymous SNV . 0 23 hm5C_associated_SNPs_76032 0 0 0 0 2 GDPD2 chrX:69644826 3'AG 69644826 Downstream 24bp
chrX 69644849 69644849 1 + C T UCEC 69644847 + 69644827 69644867 41 CCTTCACCATGGCCGAGTCCCCCGGCTGCTGCTCCGTCTGG CCTTCACCATGGCCGAGTCCCCTGGCTGCTGCTCCGTCTGG < 41bp 0.728556806159766 0.481834424997263 0.14521673 0.06695518 prediction 0.457113612319532 Functional Loss - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69644847 chrX:69644849 synonymous SNV . 0 23 hm5C_associated_SNPs_76032 0 0 0 0 2 GDPD2 chrX:69644939 5'GT 69644939 Upstream 91bp
chr18 77067143 77067143 1 + G A rs34750827 77067140 + 77067120 77067160 41 CGTGACCCCCGTGTATGAGTCTCGGGCCGGCGTTACTGAGG CGTGACCCCCGTGTATGAGTCTCAGGCCGGCGTTACTGAGG < 41bp 0.761882181755829 0.533328088535034 0.17098677 0.09821704 prediction 0.45710818644159 Functional Loss - ATP9B ENSG00000166377 CDS Human protein_coding chr18:77067140 chr18:77067143 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_76034 0 0 1 0 1 ATP9B chr18:77067234 5'GT 77067234 Upstream 92bp
chr16 27456571 27456571 1 + G A OV 27456568 + 27456548 27456588 41 ATAGTCTTCATTCCTGCCTTCTGGAGCCTGAAGACCCATCC ATAGTCTTCATTCCTGCCTTCTGAAGCCTGAAGACCCATCC < 41bp 0.790499546069713 0.561947941791556 0.1760369 0.1741572 prediction 0.457103208556314 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27456568 chr16:27456571 stopgain 0.103 0 24 hm5C_associated_SNPs_76035 0 0 0 0 1 IL21R chr16:27456597 5'GT 27456597 Upstream 27bp
chr11 44095008 44095008 1 + C T ESCA 44095006 + 44094986 44095026 41 TCTGTCCCCAGCTGAGTCAGCGCGACATGCAGAGGGTGGAG TCTGTCCCCAGCTGAGTCAGCGTGACATGCAGAGGGTGGAG < 41bp 0.830012537984638 0.6014714194756 0.48039952 0.47279114 prediction 0.457082237018076 Functional Loss - ACCS ENSG00000110455 CDS Human protein_coding chr11:44095006 chr11:44095008 synonymous SNV . 0 23 hm5C_associated_SNPs_76038 0 0 1 0 2 ACCS chr11:44094997 3'AG 44094997 Downstream 12bp
chr11 44095008 44095008 1 + C T ESCA 44095006 + 44094986 44095026 41 TCTGTCCCCAGCTGAGTCAGCGCGACATGCAGAGGGTGGAG TCTGTCCCCAGCTGAGTCAGCGTGACATGCAGAGGGTGGAG < 41bp 0.830012537984638 0.6014714194756 0.48039952 0.47279114 prediction 0.457082237018076 Functional Loss - ACCS ENSG00000110455 CDS Human protein_coding chr11:44095006 chr11:44095008 synonymous SNV . 0 23 hm5C_associated_SNPs_76038 0 0 1 0 2 ACCS chr11:44095067 5'GT 44095067 Upstream 60bp
chr22 24919696 24919696 1 + C T SKCM 24919694 + 24919674 24919714 41 ATGGACTGCTAGTTGCTAAGCTCGACCTAAACCTCTGCCAG ATGGACTGCTAGTTGCTAAGCTTGACCTAAACCTCTGCCAG < 41bp 0.85064139044716 0.622102735404813 0.1125322 0.08821428 prediction 0.457077310084694 Functional Loss - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24919694 chr22:24919696 synonymous SNV . 0 23 hm5C_associated_SNPs_76039 1 0 0 0 1 UPB1 chr22:24919741 5'GT 24919741 Upstream 46bp
chr5 428001 428001 1 + G A COAD 427998 + 427978 428018 41 GTCAGGAGCCATGCTCCCGCCGCGGCTGTCGCTGTTCTGCA GTCAGGAGCCATGCTCCCGCCGCAGCTGTCGCTGTTCTGCA < 41bp 0.781059433156152 0.552521485412034 0.5955089 0.27375513 prediction 0.457075895488235 Functional Loss - AHRR ENSG00000063438 CDS Human protein_coding chr5:427998 chr5:428001 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_76040 0 0 0 0 1 AHRR chr5:427922 3'AG 427922 Downstream 80bp
chr9 69420403 69420403 1 + G A SKCM 69420400 + 69420380 69420420 41 ACGTATCCTCAGCAATTTCCCAAGAAGCTGAAGGAAGAGCA ACGTATCCTCAGCAATTTCCCAAAAAGCTGAAGGAAGAGCA < 41bp 0.731647466919211 0.503110775317571 0.35446358 0.12876326 prediction 0.457073383203281 Functional Loss - ANKRD20A4 ENSG00000172014 CDS Human protein_coding chr9:69420400 chr9:69420403 synonymous SNV . 0 24 hm5C_associated_SNPs_76042 0 0 0 0 1 ANKRD20A4 chr9:69420426 5'GT 69420426 Upstream 24bp
chr19 39395718 39395718 1 + G A CESC 39395715 + 39395695 39395735 41 CTGGATTTTCTTCTAGGCTTCTCGGCCGGCACTGAGTACAT CTGGATTTTCTTCTAGGCTTCTCAGCCGGCACTGAGTACAT < 41bp 0.759276158190116 0.530744530501326 0.1974369 0.19507074 prediction 0.45706325537758 Functional Loss - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39395715 chr19:39395718 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_76045 0 0 1 0 3 NFKBIB chr19:39395655 3'AG 39395655 Downstream 64bp
chr19 39395718 39395718 1 + G A CESC 39395715 + 39395695 39395735 41 CTGGATTTTCTTCTAGGCTTCTCGGCCGGCACTGAGTACAT CTGGATTTTCTTCTAGGCTTCTCAGCCGGCACTGAGTACAT < 41bp 0.759276158190116 0.530744530501326 0.1974369 0.19507074 prediction 0.45706325537758 Functional Loss - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39395715 chr19:39395718 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_76045 0 0 1 0 3 NFKBIB chr19:39395711 3'AG 39395711 Downstream 8bp
chr19 39395718 39395718 1 + G A CESC 39395715 + 39395695 39395735 41 CTGGATTTTCTTCTAGGCTTCTCGGCCGGCACTGAGTACAT CTGGATTTTCTTCTAGGCTTCTCAGCCGGCACTGAGTACAT < 41bp 0.759276158190116 0.530744530501326 0.1974369 0.19507074 prediction 0.45706325537758 Functional Loss - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39395715 chr19:39395718 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_76045 0 0 1 0 3 NFKBIB chr19:39395760 5'GT 39395760 Upstream 43bp
chr11 69934154 69934154 1 + C T SKCM 69934152 + 69934132 69934172 41 GGGAGGAGTACGAGGGCAACCTCCTGGAGGCGGGCCTGGAG GGGAGGAGTACGAGGGCAACCTTCTGGAGGCGGGCCTGGAG < 41bp 0.728517570647276 0.438901510946346 0.4122666 0.5634002 prediction 0.457035141294551 Functional Loss - ANO1 ENSG00000131620 CDS Human protein_coding chr11:69934152 chr11:69934154 synonymous SNV . 0 23 hm5C_associated_SNPs_76046 0 0 0 0 1 ANO1 chr11:69934190 5'GT 69934190 Upstream 37bp
chr8 38854597 38854597 1 + G A STAD 38854594 + 38854574 38854614 41 TCGGCCGAGATGGGGTCTGGCGCGCGCTTTCCCTCGGGGAC TCGGCCGAGATGGGGTCTGGCGCACGCTTTCCCTCGGGGAC < 41bp 0.774218370171528 0.545701296056795 0.27569124 0.18126294 prediction 0.457034148229466 Functional Loss - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38854594 chr8:38854597 synonymous SNV . 0 24 hm5C_associated_SNPs_76047 0 0 1 0 1 ADAM9 chr8:38854679 5'GT 38854679 Upstream 83bp
chr5 176860194 176860194 1 + G A UCEC 176860191 + 176860171 176860211 41 TGGCCCCTTTTGCCGACTACCTCGACAGCATCTACTTCAAC TGGCCCCTTTTGCCGACTACCTCAACAGCATCTACTTCAAC < 41bp 0.769296440478796 0.540781939531567 0.23311737 0.22190335 prediction 0.457029001894458 Functional Loss - GRK6 ENSG00000198055 CDS Human protein_coding chr5:176860191 chr5:176860194 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_76049 0 0 1 0 2 GRK6 chr5:176860148 3'AG 176860148 Downstream 47bp
chr5 176860194 176860194 1 + G A UCEC 176860191 + 176860171 176860211 41 TGGCCCCTTTTGCCGACTACCTCGACAGCATCTACTTCAAC TGGCCCCTTTTGCCGACTACCTCAACAGCATCTACTTCAAC < 41bp 0.769296440478796 0.540781939531567 0.23311737 0.22190335 prediction 0.457029001894458 Functional Loss - GRK6 ENSG00000198055 CDS Human protein_coding chr5:176860191 chr5:176860194 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_76049 0 0 1 0 2 GRK6 chr5:176860240 5'GT 176860240 Upstream 47bp
chr12 176593 176593 1 + G T LUAD 176591 + 176571 176611 41 CTCGGCAAGGGCGTCCTGAGCAGGAGACCTGAGTGAGCGGG CTCGGCAAGGGCGTCCTGAGCATGAGACCTGAGTGAGCGGG < 41bp 0.910213838102702 0.681700144464297 0.9022658 0.215087 prediction 0.457027387276809 Functional Loss - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:176591 chr12:176593 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_76050 0 0 0 0 1 IQSEC3 chr12:176602 5'GT 176602 Upstream 10bp
chr12 56536179 56536179 1 + G T GBM 56536177 + 56536157 56536197 41 GGTTTACACTCAGCAGTGGTCAGGGGCAGGTGCTACTGAGA GGTTTACACTCAGCAGTGGTCATGGGCAGGTGCTACTGAGA < 41bp 0.728512293793011 0.408304968183021 0.926316 0.74043965 prediction 0.457024587586022 Functional Loss - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56536177 chr12:56536179 nonsynonymous SNV 0.958 1 23 hm5C_associated_SNPs_76051 0 0 1 0 1 ESYT1 chr12:56536209 5'GT 56536209 Upstream 31bp
chr16 24920408 24920408 1 + C T BLCA 24920405 + 24920385 24920425 41 AGCTGGTTCACAGAGCCACCCTCCAAGGAGATGGTACATTT AGCTGGTTCACAGAGCCACCCTCTAAGGAGATGGTACATTT < 41bp 0.753275974469722 0.524764864905691 0.96450007 0.94008946 prediction 0.457022219128061 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24920405 chr16:24920408 synonymous SNV . 0 24 hm5C_associated_SNPs_76052 0 0 0 0 1 SLC5A11 chr16:24920417 5'GT 24920417 Upstream 10bp
chr10 124008212 124008212 1 + T C GBM 124008211 + 124008191 124008231 41 AGACGGTGCAGCAGCTGGTTCTGGAGAAGGAGCAAGCCCTG AGACGGTGCAGCAGCTGGTTCCGGAGAAGGAGCAAGCCCTG < 41bp 0.728509559856581 0.488768985275897 0.7189591 0.9056138 prediction 0.457019119713162 Functional Loss - TACC2 ENSG00000138162 CDS Human protein_coding chr10:124008211 chr10:124008212 nonsynonymous SNV 0.994 2 22 hm5C_associated_SNPs_76053 0 0 1 0 1 TACC2 chr10:124008158 3'AG 124008158 Downstream 55bp
chr1 33959884 33959884 1 + G A SKCM 33959881 + 33959861 33959901 41 GGACATTTTTGAGGGTTTGCCTGGAGCCTTATCAAAATGTC GGACATTTTTGAGGGTTTGCCTGAAGCCTTATCAAAATGTC < 41bp 0.745662412358157 0.517159377388541 0.81667995 0.38114834 prediction 0.457006069939232 Functional Loss - ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33959881 chr1:33959884 nonsynonymous SNV 0.852 0 24 hm5C_associated_SNPs_76055 0 0 0 0 1 ZSCAN20 chr1:33959818 3'AG 33959818 Downstream 67bp
chr16 30198152 30198152 1 + G A SKCM 30198149 + 30198129 30198169 41 CTCTGCAGGTGTGGGAGATCCCAGATGGGGGCCTGATGCTG CTCTGCAGGTGTGGGAGATCCCAAATGGGGGCCTGATGCTG < 41bp 0.761730746949374 0.533228634097682 0.7994405 0.8476676 prediction 0.457004225703385 Functional Loss - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30198149 chr16:30198152 nonsynonymous SNV 0.874 1 24 hm5C_associated_SNPs_76056 0 0 0 0 1 CORO1A chr16:30198137 3'AG 30198137 Downstream 16bp
chr1 2237625 2237625 1 + G A UCEC 2237622 + 2237602 2237642 41 GAAGCGGGAGCTGGAGCAGGCGCGGCAGGCCCGGGTGTGCG GAAGCGGGAGCTGGAGCAGGCGCAGCAGGCCCGGGTGTGCG < 41bp 0.76722386609168 0.5387234587208 0.7036832 0.5059147 prediction 0.45700081474176 Functional Loss - SKI ENSG00000157933 CDS Human protein_coding chr1:2237622 chr1:2237625 nonsynonymous SNV 0.991 1 24 hm5C_associated_SNPs_76057 0 0 1 0 1 SKI chr1:2237689 5'GT 2237689 Upstream 65bp
chr2 24303814 24303814 1 + C T BRCA 24303812 + 24303792 24303832 41 AGCTGTGACCAGAGGAATAGCTCCAGCCATCCGGGTGAGTT AGCTGTGACCAGAGGAATAGCTTCAGCCATCCGGGTGAGTT < 41bp 0.828416844999262 0.599919011765649 0.9041592 0.22582361 prediction 0.456995666467226 Functional Loss - TP53I3 ENSG00000115129 CDS Human protein_coding chr2:24303812 chr2:24303814 nonsynonymous SNV 0.000 3 23 hm5C_associated_SNPs_76059 0 0 0 0 2 TP53I3 chr2:24303746 3'AG 24303746 Downstream 69bp
chr2 24303814 24303814 1 + C T BRCA 24303812 + 24303792 24303832 41 AGCTGTGACCAGAGGAATAGCTCCAGCCATCCGGGTGAGTT AGCTGTGACCAGAGGAATAGCTTCAGCCATCCGGGTGAGTT < 41bp 0.828416844999262 0.599919011765649 0.9041592 0.22582361 prediction 0.456995666467226 Functional Loss - TP53I3 ENSG00000115129 CDS Human protein_coding chr2:24303812 chr2:24303814 nonsynonymous SNV 0.000 3 23 hm5C_associated_SNPs_76059 0 0 0 0 2 TP53I3 chr2:24303825 5'GT 24303825 Upstream 12bp
chr18 8831661 8831661 1 + G A CESC 8831658 + 8831638 8831678 41 GAGCCCTGCTTCTCCAGGCCCGAGAGACCAGCAAACCGTCG GAGCCCTGCTTCTCCAGGCCCGAAAGACCAGCAAACCGTCG < 41bp 0.74662291879095 0.518125992804385 0.9364393 0.4271522 prediction 0.45699385197313 Functional Loss - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8831658 chr18:8831661 synonymous SNV . 0 24 hm5C_associated_SNPs_76060 0 0 0 1 1 MTCL1 chr18:8831605 3'AG 8831605 Downstream 57bp
chr10 86185535 86185535 1 + G C UCEC 86185534 + 86185514 86185554 41 ACCGACCAGACAGAAATGTTCGGCAGCCTCAGGAAGGTTTT ACCGACCAGACAGAAATGTTCCGCAGCCTCAGGAAGGTTTT < 41bp 0.728494490208681 0.415564453710967 0.8861074 0.23513013 prediction 0.456988980417362 Functional Loss - CCSER2 ENSG00000107771 CDS Human protein_coding chr10:86185534 chr10:86185535 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_76061 0 0 1 0 1 CCSER2 chr10:86185487 3'AG 86185487 Downstream 49bp
chr8 42183529 42183529 1 + G A rs78448523 42183526 + 42183506 42183546 41 GTCAGTGGAAGCCCGGATAGCATGAATGCCTCTCGACTTAG GTCAGTGGAAGCCCGGATAGCATAAATGCCTCTCGACTTAG < 41bp 0.758004897659177 0.529514196186372 0.12605828 0.067032576 prediction 0.45698140294561 Functional Loss - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42183526 chr8:42183529 nonsynonymous SNV 0.493 1 24 hm5C_associated_SNPs_76064 0 0 1 0 2 IKBKB chr8:42183488 3'AG 42183488 Downstream 42bp
chr8 42183529 42183529 1 + G A rs78448523 42183526 + 42183506 42183546 41 GTCAGTGGAAGCCCGGATAGCATGAATGCCTCTCGACTTAG GTCAGTGGAAGCCCGGATAGCATAAATGCCTCTCGACTTAG < 41bp 0.758004897659177 0.529514196186372 0.12605828 0.067032576 prediction 0.45698140294561 Functional Loss - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42183526 chr8:42183529 nonsynonymous SNV 0.493 1 24 hm5C_associated_SNPs_76064 0 0 1 0 2 IKBKB chr8:42183615 5'GT 42183615 Upstream 87bp
chr9 141070101 141070101 1 + C T LUAD 141070099 + 141070079 141070119 41 CTCGTGGATCTGGAGCCGGGCACCATGGACTCTGTGCGCTC CTCGTGGATCTGGAGCCGGGCATCATGGACTCTGTGCGCTC < 41bp 0.798137649036334 0.569648983466623 0.2854647 0.36942345 prediction 0.456977331139423 Functional Loss - TUBBP5 ENSG00000159247 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:141070099 chr9:141070101 . . 0 23 hm5C_associated_SNPs_76067 0 0 0 0 1 TUBBP5 chr9:141070053 3'AG 141070053 Downstream 49bp
chr15 74573121 74573121 1 + C T UCEC 74573119 + 74573099 74573139 41 GGAAAGGCTTGGACGGGCTTCACGTGGAGCGGCTCCCCATC GGAAAGGCTTGGACGGGCTTCATGTGGAGCGGCTCCCCATC < 41bp 0.728488407474106 0.465975229572889 0.4400618 0.3854099 prediction 0.456976814948212 Functional Loss - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74573119 chr15:74573121 synonymous SNV . 0 23 hm5C_associated_SNPs_76068 0 0 0 0 1 CCDC33 chr15:74573142 5'GT 74573142 Upstream 22bp
chr9 136319600 136319600 1 + G A rs34934621 136319597 + 136319577 136319617 41 GGCCTTGGCACTGCTAGACGCTCGGTGGCCTGTGTGCAGCT GGCCTTGGCACTGCTAGACGCTCAGTGGCCTGTGTGCAGCT < 41bp 0.728484620452513 0.489933541849463 0.14330438 0.07039496 prediction 0.456969240905026 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136319597 chr9:136319600 synonymous SNV . 0 24 hm5C_associated_SNPs_76069 2 0 0 0 1 ADAMTS13 chr9:136319537 3'AG 136319537 Downstream 64bp
chr9 136319599 136319599 1 + C T UCEC 136319597 + 136319577 136319617 41 GGCCTTGGCACTGCTAGACGCTCGGTGGCCTGTGTGCAGCT GGCCTTGGCACTGCTAGACGCTTGGTGGCCTGTGTGCAGCT < 41bp 0.728484620452513 0.471130598813452 0.14330438 0.044749945 prediction 0.456969240905026 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136319597 chr9:136319599 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_76070 0 0 0 0 1 ADAMTS13 chr9:136319537 3'AG 136319537 Downstream 63bp
chr20 35064592 35064592 1 + G A STAD 35064589 + 35064569 35064609 41 GCCGCGGCCGAGGGCCCTATCCCGTGCCGGCGCATGCGCAG GCCGCGGCCGAGGGCCCTATCCCATGCCGGCGCATGCGCAG < 41bp 0.782151370954769 0.553673436537874 0.49421775 0.36692232 prediction 0.456955868833789 Functional Loss - DLGAP4 ENSG00000080845 CDS Human protein_coding chr20:35064589 chr20:35064592 synonymous SNV . 0 24 hm5C_associated_SNPs_76074 0 0 0 0 1 DLGAP4 chr20:35064512 3'AG 35064512 Downstream 81bp
chr11 47602520 47602520 1 + G A UCEC 47602517 + 47602497 47602537 41 GACAGCAGTGGACGTCCCAACTCGGCAAAACCGTTTTGAGG GACAGCAGTGGACGTCCCAACTCAGCAAAACCGTTTTGAGG < 41bp 0.72846446371936 0.490445344285908 0.087176114 0.07510269 prediction 0.45692892743872 Functional Loss - NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47602517 chr11:47602520 nonsynonymous SNV 0.980 5 24 hm5C_associated_SNPs_76075 0 0 1 0 1 NDUFS3 chr11:47602536 5'GT 47602536 Upstream 17bp
chr11 65715228 65715228 1 + G A LUSC 65715225 + 65715205 65715245 41 AAGGCGACAATGGAGGAAGACAAGGGCCAAGGAGCTGCAGG AAGGCGACAATGGAGGAAGACAAAGGCCAAGGAGCTGCAGG < 41bp 0.755879927395155 0.527421928469419 0.28518856 0.16130382 prediction 0.456915997851472 Functional Loss - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65715225 chr11:65715228 unknown 0.042 0 24 hm5C_associated_SNPs_76078 0 0 0 1 1 TSGA10IP chr11:65715299 5'GT 65715299 Upstream 72bp
chr19 3452490 3452490 1 + G A SKCM 3452487 + 3452467 3452507 41 ACTGTCTCCGCAGGGATCGCCCGGAGCCCACACCCGTCCTC ACTGTCTCCGCAGGGATCGCCCGAAGCCCACACCCGTCCTC < 41bp 0.728456149211172 0.481771934686052 0.9318508 0.4668062 prediction 0.456912298422343 Functional Loss - NFIC ENSG00000141905 CDS Human protein_coding chr19:3452487 chr19:3452490 synonymous SNV . 0 24 hm5C_associated_SNPs_76079 0 0 0 0 1 NFIC chr19:3452480 3'AG 3452480 Downstream 11bp
chrX 2638406 2638406 1 + G A UCEC 2638403 + 2638383 2638423 41 TCTTTCACAAACAGACGACCCACGACCACCGAACCCACCCA TCTTTCACAAACAGACGACCCACAACCACCGAACCCACCCA < 41bp 0.752451278845787 0.523999808728787 0.03604701 0.011820644 prediction 0.456902940234001 Functional Loss - CD99 ENSG00000002586 CDS Human protein_coding chrX:2638403 chrX:2638406 nonsynonymous SNV 0.014 0 24 hm5C_associated_SNPs_76082 0 0 1 0 2 CD99 chrX:2638397 3'AG 2638397 Downstream 10bp
chrX 2638406 2638406 1 + G A UCEC 2638403 + 2638383 2638423 41 TCTTTCACAAACAGACGACCCACGACCACCGAACCCACCCA TCTTTCACAAACAGACGACCCACAACCACCGAACCCACCCA < 41bp 0.752451278845787 0.523999808728787 0.03604701 0.011820644 prediction 0.456902940234001 Functional Loss - CD99 ENSG00000002586 CDS Human protein_coding chrX:2638403 chrX:2638406 nonsynonymous SNV 0.014 0 24 hm5C_associated_SNPs_76082 0 0 1 0 2 CD99 chrX:2638465 5'GT 2638465 Upstream 60bp
chr15 38776519 38776519 1 + G A CESC 38776516 + 38776496 38776536 41 ATGAAATTGAACCACCACCTCCAGAAATGCCCCCTTGGCAA ATGAAATTGAACCACCACCTCCAAAAATGCCCCCTTGGCAA < 41bp 0.765931603596271 0.537485011149352 0.1569379 0.019195884 prediction 0.456893184893838 Functional Loss - FAM98B ENSG00000171262 CDS Human protein_coding chr15:38776516 chr15:38776519 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_76084 0 0 1 0 1 FAM98B chr15:38776456 3'AG 38776456 Downstream 64bp
chr20 39729986 39729986 1 + G A BLCA 39729983 + 39729963 39730003 41 CATCATGCTTAACCCTAGTTCACGAATCAAGGTAAGGGGAT CATCATGCTTAACCCTAGTTCACAAATCAAGGTAAGGGGAT < 41bp 0.732481060753687 0.504041825428724 0.023370892 0.016157776 prediction 0.456878470649926 Functional Loss - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39729983 chr20:39729986 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_76086 0 0 1 0 1 TOP1 chr20:39729993 5'GT 39729993 Upstream 8bp
chr1 99470055 99470055 1 - T A LUAD 99470059 - 99470039 99470079 41 ACCGCAAACCCTACCCGGGCCCGGAGGACAGCAGCGCCGTG ACCGCAAACCCTACCCGGGCCCGGTGGACAGCAGCGCCGTG < 41bp 0.870952563646922 0.642513454049697 0.9055343 0.84094 prediction 0.45687821919445 Functional Loss - PLPPR5 ENSG00000117598 CDS Human protein_coding chr1:99470059 chr1:99470055 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_76087 0 0 0 0 1 PLPPR5 chr1:99469991 5'GT 99469991 Upstream 65bp
chr19 10794630 10794630 1 + G A rs2229383 10794627 + 10794607 10794647 41 AGCTATGGGTACGGAGGCAACTCGGCGACAGCAGGCTACAG AGCTATGGGTACGGAGGCAACTCAGCGACAGCAGGCTACAG < 41bp 0.765644408532037 0.537206894099529 0.5843768 0.17050526 prediction 0.456875028865017 Functional Loss - ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794627 chr19:10794630 synonymous SNV . 0 24 hm5C_associated_SNPs_76088 0 1 1 0 2 ILF3 chr19:10794593 3'AG 10794593 Downstream 38bp
chr19 10794630 10794630 1 + G A rs2229383 10794627 + 10794607 10794647 41 AGCTATGGGTACGGAGGCAACTCGGCGACAGCAGGCTACAG AGCTATGGGTACGGAGGCAACTCAGCGACAGCAGGCTACAG < 41bp 0.765644408532037 0.537206894099529 0.5843768 0.17050526 prediction 0.456875028865017 Functional Loss - ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794627 chr19:10794630 synonymous SNV . 0 24 hm5C_associated_SNPs_76088 0 1 1 0 2 ILF3 chr19:10794646 5'GT 10794646 Upstream 17bp
chr12 52056845 52056845 1 + G T LUSC 52056842 + 52056822 52056862 41 AAGGCCTGGTTGCAGTTCCCCTGGAGGACTTTGACCCATAC AAGGCCTGGTTGCAGTTCCCCTGTAGGACTTTGACCCATAC < 41bp 0.728436543327139 0.356850830066282 0.06985062 0.00530082 prediction 0.456873086654278 Functional Loss - SCN8A ENSG00000196876 CDS Human protein_coding chr12:52056842 chr12:52056845 stopgain 1.000 0 24 hm5C_associated_SNPs_76089 0 0 1 0 1 SCN8A chr12:52056877 5'GT 52056877 Upstream 33bp
chr3 13672280 13672280 1 + G C CESC 13672276 + 13672256 13672296 41 CCTACCAGTGCTACTGCCGCCAGGGCTACCAGCTGGCTGAG CCTACCAGTGCTACTGCCGCCAGGCCTACCAGCTGGCTGAG < 41bp 0.728432576513144 0.434338175048198 0.8999108 0.88103014 prediction 0.456865153026288 Functional Loss - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13672276 chr3:13672280 nonsynonymous SNV 0.997 5 25 hm5C_associated_SNPs_76090 0 0 0 0 2 FBLN2 chr3:13672199 3'AG 13672199 Downstream 82bp
chr3 13672280 13672280 1 + G C CESC 13672276 + 13672256 13672296 41 CCTACCAGTGCTACTGCCGCCAGGGCTACCAGCTGGCTGAG CCTACCAGTGCTACTGCCGCCAGGCCTACCAGCTGGCTGAG < 41bp 0.728432576513144 0.434338175048198 0.8999108 0.88103014 prediction 0.456865153026288 Functional Loss - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13672276 chr3:13672280 nonsynonymous SNV 0.997 5 25 hm5C_associated_SNPs_76090 0 0 0 0 2 FBLN2 chr3:13672315 5'GT 13672315 Upstream 36bp
chr1 46032600 46032600 1 + C T COAD 46032598 + 46032578 46032618 41 TGTGGAACACCAAGCACCACCCCGAGGATGTGGAGCCTGCC TGTGGAACACCAAGCACCACCCTGAGGATGTGGAGCCTGCC < 41bp 0.72843184187452 0.443252291665487 0.13856113 0.056027234 prediction 0.456863683749039 Functional Loss - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46032598 chr1:46032600 synonymous SNV . 0 23 hm5C_associated_SNPs_76092 0 0 1 0 2 AKR1A1 chr1:46032541 3'AG 46032541 Downstream 60bp
chr1 46032600 46032600 1 + C T COAD 46032598 + 46032578 46032618 41 TGTGGAACACCAAGCACCACCCCGAGGATGTGGAGCCTGCC TGTGGAACACCAAGCACCACCCTGAGGATGTGGAGCCTGCC < 41bp 0.72843184187452 0.443252291665487 0.13856113 0.056027234 prediction 0.456863683749039 Functional Loss - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46032598 chr1:46032600 synonymous SNV . 0 23 hm5C_associated_SNPs_76092 0 0 1 0 2 AKR1A1 chr1:46032692 5'GT 46032692 Upstream 93bp
chr7 142568144 142568144 1 + G C LUAD 142568143 + 142568123 142568163 41 CCAGATACCCTGCAGGCTGGCGGGGACCCAGGGGAAAGGTC CCAGATACCCTGCAGGCTGGCCGGGACCCAGGGGAAAGGTC < 41bp 0.72843099233773 0.414634914087079 0.9184725 0.34998286 prediction 0.456861984675459 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142568143 chr7:142568144 nonsynonymous SNV 0.713 2 22 hm5C_associated_SNPs_76093 0 0 0 0 1 EPHB6 chr7:142568160 5'GT 142568160 Upstream 17bp
chr8 146278525 146278525 1 + G A UCEC 146278522 + 146278502 146278542 41 CTCAAGAGGCAGAAACCCACCCCGAAACAGAGTAAGGGACC CTCAAGAGGCAGAAACCCACCCCAAAACAGAGTAAGGGACC < 41bp 0.753525321604647 0.525095442064211 0.09909207 0.09745771 prediction 0.456859759080872 Functional Loss - C8orf33 ENSG00000182307 CDS Human protein_coding chr8:146278522 chr8:146278525 synonymous SNV . 0 24 hm5C_associated_SNPs_76096 0 0 1 0 1 C8orf33 chr8:146278448 3'AG 146278448 Downstream 78bp
chr7 40234623 40234623 1 + G C HNSC 40234622 + 40234602 40234642 41 CTGGGATATGAAGATATAGACGAGATTGCTCCTCACATCAT CTGGGATATGAAGATATAGACCAGATTGCTCCTCACATCAT < 41bp 0.728426992847177 0.469485013584963 0.39043167 0.11241317 prediction 0.456853985694354 Functional Loss - SUGCT ENSG00000175600 CDS Human protein_coding chr7:40234622 chr7:40234623 nonsynonymous SNV 0.999 0 22 hm5C_associated_SNPs_76097 0 0 1 0 2 SUGCT chr7:40234539 3'AG 40234539 Downstream 85bp
chr7 40234623 40234623 1 + G C HNSC 40234622 + 40234602 40234642 41 CTGGGATATGAAGATATAGACGAGATTGCTCCTCACATCAT CTGGGATATGAAGATATAGACCAGATTGCTCCTCACATCAT < 41bp 0.728426992847177 0.469485013584963 0.39043167 0.11241317 prediction 0.456853985694354 Functional Loss - SUGCT ENSG00000175600 CDS Human protein_coding chr7:40234622 chr7:40234623 nonsynonymous SNV 0.999 0 22 hm5C_associated_SNPs_76097 0 0 1 0 2 SUGCT chr7:40234659 5'GT 40234659 Upstream 37bp
chr1 8390294 8390294 1 + G A rs191155736 8390291 + 8390271 8390311 41 CTCGGAGGAGGCTTTGGATACGTGGTCGGCGGAATCCACTG CTCGGAGGAGGCTTTGGATACGTAGTCGGCGGAATCCACTG < 41bp 0.780942152046341 0.552524232877416 0.08126265 0.034302235 prediction 0.456835838337849 Functional Loss - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8390291 chr1:8390294 synonymous SNV . 0 24 hm5C_associated_SNPs_76100 0 0 0 0 1 SLC45A1 chr1:8390269 3'AG 8390269 Downstream 26bp
chr3 40442407 40442407 1 + G T UCEC 40442405 + 40442385 40442425 41 TATGGTATTGTGCTGGATGCCGGGTCTTCAAGAACCACAGT TATGGTATTGTGCTGGATGCCGTGTCTTCAAGAACCACAGT < 41bp 0.728415622778265 0.370878651336202 0.83310294 0.14552838 prediction 0.45683124555653 Functional Loss - ENTPD3 ENSG00000168032 CDS Human protein_coding chr3:40442405 chr3:40442407 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_76102 0 0 0 0 2 ENTPD3 chr3:40442385 3'AG 40442385 Downstream 23bp
chr3 40442407 40442407 1 + G T UCEC 40442405 + 40442385 40442425 41 TATGGTATTGTGCTGGATGCCGGGTCTTCAAGAACCACAGT TATGGTATTGTGCTGGATGCCGTGTCTTCAAGAACCACAGT < 41bp 0.728415622778265 0.370878651336202 0.83310294 0.14552838 prediction 0.45683124555653 Functional Loss - ENTPD3 ENSG00000168032 CDS Human protein_coding chr3:40442405 chr3:40442407 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_76102 0 0 0 0 2 ENTPD3 chr3:40442502 5'GT 40442502 Upstream 96bp
chr15 41148251 41148251 1 + G A rs116845898 41148248 + 41148228 41148268 41 AGCAGTGCCTCGAGTCTTGTCGCGGCATCTCCAGTGAGTGG AGCAGTGCCTCGAGTCTTGTCGCAGCATCTCCAGTGAGTGG < 41bp 0.79464472732934 0.566231432155602 0.348244 0.108769864 prediction 0.456826590347476 Functional Loss - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41148248 chr15:41148251 nonsynonymous SNV 0.854 4 24 hm5C_associated_SNPs_76103 0 0 0 0 1 SPINT1 chr15:41148260 5'GT 41148260 Upstream 10bp
chr12 7272113 7272113 1 + A T UCEC 7272109 + 7272089 7272129 41 CCCCCAGATGGTTTACCTGCCTGGACAGCAAGATGATGGCT CCCCCAGATGGTTTACCTGCCTGGTCAGCAAGATGATGGCT < 41bp 0.728411249080701 0.429379808668338 0.18207914 0.1391311 prediction 0.456822498161401 Functional Loss - C1RL-AS1 ENSG00000205885 ncRNA_exonic Human antisense chr12:7272109 chr12:7272113 . . 0 25 hm5C_associated_SNPs_76105 0 0 1 0 2 C1RL-AS1 chr12:7272096 3'AG 7272096 Downstream 18bp
chr12 7272113 7272113 1 + A T UCEC 7272109 + 7272089 7272129 41 CCCCCAGATGGTTTACCTGCCTGGACAGCAAGATGATGGCT CCCCCAGATGGTTTACCTGCCTGGTCAGCAAGATGATGGCT < 41bp 0.728411249080701 0.429379808668338 0.18207914 0.1391311 prediction 0.456822498161401 Functional Loss - C1RL-AS1 ENSG00000205885 ncRNA_exonic Human antisense chr12:7272109 chr12:7272113 . . 0 25 hm5C_associated_SNPs_76105 0 0 1 0 2 C1RL-AS1 chr12:7272149 5'GT 7272149 Upstream 37bp
chr1 167653175 167653175 1 + G A rs112577989 167653172 + 167653152 167653192 41 ACCAATGCCAATGTGGACAACTCGGCGTCCCCCTCGGTGGC ACCAATGCCAATGTGGACAACTCAGCGTCCCCCTCGGTGGC < 41bp 0.794083692193684 0.565673186729269 0.28615877 0.113936245 prediction 0.456821010928829 Functional Loss - RCSD1 ENSG00000198771 CDS Human protein_coding chr1:167653172 chr1:167653175 synonymous SNV . 0 24 hm5C_associated_SNPs_76106 0 0 1 0 2 RCSD1 chr1:167653137 3'AG 167653137 Downstream 39bp
chr1 167653175 167653175 1 + G A rs112577989 167653172 + 167653152 167653192 41 ACCAATGCCAATGTGGACAACTCGGCGTCCCCCTCGGTGGC ACCAATGCCAATGTGGACAACTCAGCGTCCCCCTCGGTGGC < 41bp 0.794083692193684 0.565673186729269 0.28615877 0.113936245 prediction 0.456821010928829 Functional Loss - RCSD1 ENSG00000198771 CDS Human protein_coding chr1:167653172 chr1:167653175 synonymous SNV . 0 24 hm5C_associated_SNPs_76106 0 0 1 0 2 RCSD1 chr1:167653238 5'GT 167653238 Upstream 64bp
chr17 48246591 48246591 1 + C T GBM 48246589 + 48246569 48246609 41 ACACCTTGGCACCCCACTTCCGCGTTGACTGGTGCAATGTG ACACCTTGGCACCCCACTTCCGTGTTGACTGGTGCAATGTG < 41bp 0.728409858107595 0.463621835806433 0.22121724 0.20842165 prediction 0.456819716215189 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48246589 chr17:48246591 synonymous SNV . 0 23 hm5C_associated_SNPs_76107 0 0 0 3 1 SGCA chr17:48246615 5'GT 48246615 Upstream 25bp
chr10 7762845 7762845 1 + G T CESC 7762843 + 7762823 7762863 41 ATGTGTGGGTTATCGAACCACAGGGACTGAGATTTCTTCAT ATGTGTGGGTTATCGAACCACATGGACTGAGATTTCTTCAT < 41bp 0.728408889775883 0.377871755607008 0.9037776 0.33030075 prediction 0.456817779551767 Functional Loss - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7762843 chr10:7762845 nonsynonymous SNV 0.211 3 23 hm5C_associated_SNPs_76108 0 0 1 0 2 ITIH2 chr10:7762819 3'AG 7762819 Downstream 27bp
chr10 7762845 7762845 1 + G T CESC 7762843 + 7762823 7762863 41 ATGTGTGGGTTATCGAACCACAGGGACTGAGATTTCTTCAT ATGTGTGGGTTATCGAACCACATGGACTGAGATTTCTTCAT < 41bp 0.728408889775883 0.377871755607008 0.9037776 0.33030075 prediction 0.456817779551767 Functional Loss - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7762843 chr10:7762845 nonsynonymous SNV 0.211 3 23 hm5C_associated_SNPs_76108 0 0 1 0 2 ITIH2 chr10:7762926 5'GT 7762926 Upstream 82bp
chr12 21207465 21207465 1 + G A SKCM 21207462 + 21207442 21207482 41 AGCGCACTTGGGTGAATGCCCAAGAGATGATGCTTGTACAA AGCGCACTTGGGTGAATGCCCAAAAGATGATGCTTGTACAA < 41bp 0.728406632330632 0.497277057645216 0.91215 0.42637804 prediction 0.456813264661264 Functional Loss - SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21207462 chr12:21207465 nonsynonymous SNV 0.953 0 24 hm5C_associated_SNPs_76109 0 0 0 0 1 SLCO1B7 chr12:21207386 3'AG 21207386 Downstream 80bp
chr17 79987488 79987488 1 + A C rs547906951 79987487 + 79987467 79987507 41 GAGGAGGAGCTGATCAAGGCCAAGAGCCAGGCCCGCCTGGA GAGGAGGAGCTGATCAAGGCCCAGAGCCAGGCCCGCCTGGA < 41bp 0.803789749533766 0.575388552176231 0.78140473 0.72037154 prediction 0.456802394715069 Functional Loss - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79987487 chr17:79987488 nonsynonymous SNV 0.931 2 22 hm5C_associated_SNPs_76111 0 0 1 0 2 LRRC45 chr17:79987419 3'AG 79987419 Downstream 70bp
chr17 79987488 79987488 1 + A C rs547906951 79987487 + 79987467 79987507 41 GAGGAGGAGCTGATCAAGGCCAAGAGCCAGGCCCGCCTGGA GAGGAGGAGCTGATCAAGGCCCAGAGCCAGGCCCGCCTGGA < 41bp 0.803789749533766 0.575388552176231 0.78140473 0.72037154 prediction 0.456802394715069 Functional Loss - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79987487 chr17:79987488 nonsynonymous SNV 0.931 2 22 hm5C_associated_SNPs_76111 0 0 1 0 2 LRRC45 chr17:79987511 5'GT 79987511 Upstream 24bp
chr12 121660838 121660838 1 + C T COAD 121660836 + 121660816 121660856 41 GCCCGGTGGAGGATGACACACACGTGCCACAGTGAGTCCAG GCCCGGTGGAGGATGACACACATGTGCCACAGTGAGTCCAG < 41bp 0.797541402679961 0.569142861103577 0.059645683 0.073813766 prediction 0.456797083152768 Functional Loss - P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660836 chr12:121660838 synonymous SNV . 0 23 hm5C_associated_SNPs_76112 0 0 0 2 2 P2RX4 chr12:121660750 3'AG 121660750 Downstream 89bp
chr12 121660838 121660838 1 + C T COAD 121660836 + 121660816 121660856 41 GCCCGGTGGAGGATGACACACACGTGCCACAGTGAGTCCAG GCCCGGTGGAGGATGACACACATGTGCCACAGTGAGTCCAG < 41bp 0.797541402679961 0.569142861103577 0.059645683 0.073813766 prediction 0.456797083152768 Functional Loss - P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660836 chr12:121660838 synonymous SNV . 0 23 hm5C_associated_SNPs_76112 0 0 0 2 2 P2RX4 chr12:121660846 5'GT 121660846 Upstream 9bp
chr17 7480000 7480000 1 + G A rs61730297 7479997 + 7479977 7480017 41 CGTGTGTTTGATATGCTTAACCGGAGATACCTGTGTGAGTA CGTGTGTTTGATATGCTTAACCGAAGATACCTGTGTGAGTA < 41bp 0.728398251978233 0.482366593339098 0.8676814 0.41040093 prediction 0.456796503956466 Functional Loss - EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479997 chr17:7480000 synonymous SNV . 0 24 hm5C_associated_SNPs_76113 0 0 1 0 1 EIF4A1 chr17:7480010 5'GT 7480010 Upstream 11bp
chr19 49510383 49510383 1 + G C KIRC 49510379 + 49510359 49510399 41 AGGCGCTGACGCAGGCCTTCCGGCGGTCCATCGGCGTTCGC AGGCGCTGACGCAGGCCTTCCGGCCGTCCATCGGCGTTCGC < 41bp 0.856901077559642 0.628505321484808 0.4508599 0.13795185 prediction 0.456791512149668 Functional Loss - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49510379 chr19:49510383 nonsynonymous SNV 0.234 1 25 hm5C_associated_SNPs_76114 0 0 1 0 1 RUVBL2 chr19:49510404 5'GT 49510404 Upstream 22bp
chr2 11718519 11718519 1 + G A UCEC 11718516 + 11718496 11718536 41 CTTCCCCAGCGAGCCCGTTCCTGGGACGAACCCCAGCATCC CTTCCCCAGCGAGCCCGTTCCTGAGACGAACCCCAGCATCC < 41bp 0.78734178245035 0.558946714014454 0.89842355 0.41422006 prediction 0.456790136871793 Functional Loss - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11718516 chr2:11718519 nonsynonymous SNV 0.003 2 24 hm5C_associated_SNPs_76115 0 0 1 0 1 GREB1 chr2:11718557 5'GT 11718557 Upstream 39bp
chr16 2284751 2284751 1 + C T UCEC 2284749 + 2284729 2284769 41 GCGGCCGTGGCTTCGCCGAGCACGGCACGCTGAACCGGCAC GCGGCCGTGGCTTCGCCGAGCATGGCACGCTGAACCGGCAC < 41bp 0.781516127678253 0.553123344658382 0.33499983 0.28346938 prediction 0.45678556603974 Functional Loss - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2284749 chr16:2284751 synonymous SNV . 0 23 hm5C_associated_SNPs_76116 0 0 0 0 1 E4F1 chr16:2284782 5'GT 2284782 Upstream 32bp
chr3 9970273 9970273 1 + G A COAD 9970270 + 9970250 9970290 41 CTCTCTTTCCACAGAAGGTTCTCGAGTTCCCATTGCTGAAA CTCTCTTTCCACAGAAGGTTCTCAAGTTCCCATTGCTGAAA < 41bp 0.737856403638417 0.509469516350182 0.1981073 0.09192893 prediction 0.45677377457647 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9970270 chr3:9970273 nonsynonymous SNV 0.010 0 24 hm5C_associated_SNPs_76119 0 0 1 0 2 IL17RC chr3:9970264 3'AG 9970264 Downstream 10bp
chr3 9970273 9970273 1 + G A COAD 9970270 + 9970250 9970290 41 CTCTCTTTCCACAGAAGGTTCTCGAGTTCCCATTGCTGAAA CTCTCTTTCCACAGAAGGTTCTCAAGTTCCCATTGCTGAAA < 41bp 0.737856403638417 0.509469516350182 0.1981073 0.09192893 prediction 0.45677377457647 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9970270 chr3:9970273 nonsynonymous SNV 0.010 0 24 hm5C_associated_SNPs_76119 0 0 1 0 2 IL17RC chr3:9970314 5'GT 9970314 Upstream 42bp
chr2 44071654 44071654 1 + G T LGG 44071652 + 44071632 44071672 41 CCTGTCTCCCACAGGGCCTCCAGGATAGATTGTTCTCCTCT CCTGTCTCCCACAGGGCCTCCATGATAGATTGTTCTCCTCT < 41bp 0.728377626746469 0.372546012356008 0.24358201 0.031959593 prediction 0.456755253492937 Functional Loss - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44071652 chr2:44071654 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_76127 0 0 0 0 2 ABCG8 chr2:44071646 3'AG 44071646 Downstream 9bp
chr2 44071654 44071654 1 + G T LGG 44071652 + 44071632 44071672 41 CCTGTCTCCCACAGGGCCTCCAGGATAGATTGTTCTCCTCT CCTGTCTCCCACAGGGCCTCCATGATAGATTGTTCTCCTCT < 41bp 0.728377626746469 0.372546012356008 0.24358201 0.031959593 prediction 0.456755253492937 Functional Loss - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44071652 chr2:44071654 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_76127 0 0 0 0 2 ABCG8 chr2:44071747 5'GT 44071747 Upstream 94bp
chr2 44071655 44071655 1 + G A SKCM 44071652 + 44071632 44071672 41 CCTGTCTCCCACAGGGCCTCCAGGATAGATTGTTCTCCTCT CCTGTCTCCCACAGGGCCTCCAGAATAGATTGTTCTCCTCT < 41bp 0.728377626746469 0.488133251794699 0.24358201 0.17904732 prediction 0.456755253492937 Functional Loss - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44071652 chr2:44071655 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_76128 0 0 0 0 2 ABCG8 chr2:44071646 3'AG 44071646 Downstream 10bp
chr2 44071655 44071655 1 + G A SKCM 44071652 + 44071632 44071672 41 CCTGTCTCCCACAGGGCCTCCAGGATAGATTGTTCTCCTCT CCTGTCTCCCACAGGGCCTCCAGAATAGATTGTTCTCCTCT < 41bp 0.728377626746469 0.488133251794699 0.24358201 0.17904732 prediction 0.456755253492937 Functional Loss - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44071652 chr2:44071655 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_76128 0 0 0 0 2 ABCG8 chr2:44071747 5'GT 44071747 Upstream 93bp
chr18 3452353 3452353 1 + C T BLCA 3452351 + 3452331 3452371 41 GGGCGCACAGGGTCCAGCTCCTCGGCGCCGACTCCTGGAAA GGGCGCACAGGGTCCAGCTCCTTGGCGCCGACTCCTGGAAA < 41bp 0.780061125023086 0.551684938993276 0.86288244 0.5407357 prediction 0.45675237205962 Functional Loss - TGIF1 ENSG00000177426 CDS Human protein_coding chr18:3452351 chr18:3452353 nonsynonymous SNV 0.100 2 23 hm5C_associated_SNPs_76130 0 0 0 0 1 TGIF1 chr18:3452380 5'GT 3452380 Upstream 28bp
chr14 68113451 68113451 1 + G T OV 68113449 + 68113429 68113469 41 TCTGAGAGACGTGGACCCTCCTGAACAGTAAGTTGATGCAT TCTGAGAGACGTGGACCCTCCTTAACAGTAAGTTGATGCAT < 41bp 0.728375766200675 0.395851098860922 0.17470187 0.054819763 prediction 0.45675153240135 Functional Loss - ARG2 ENSG00000081181 CDS Human protein_coding chr14:68113449 chr14:68113451 stopgain 0.999 1 23 hm5C_associated_SNPs_76131 0 0 1 0 2 ARG2 chr14:68113361 3'AG 68113361 Downstream 91bp
chr14 68113451 68113451 1 + G T OV 68113449 + 68113429 68113469 41 TCTGAGAGACGTGGACCCTCCTGAACAGTAAGTTGATGCAT TCTGAGAGACGTGGACCCTCCTTAACAGTAAGTTGATGCAT < 41bp 0.728375766200675 0.395851098860922 0.17470187 0.054819763 prediction 0.45675153240135 Functional Loss - ARG2 ENSG00000081181 CDS Human protein_coding chr14:68113449 chr14:68113451 stopgain 0.999 1 23 hm5C_associated_SNPs_76131 0 0 1 0 2 ARG2 chr14:68113455 5'GT 68113455 Upstream 5bp
chr12 6946231 6946231 1 + C T COAD 6946229 + 6946209 6946249 41 CATGAACGCTTCGAGGGGCTCACGGTGCTTAAGGCTGCGCA CATGAACGCTTCGAGGGGCTCATGGTGCTTAAGGCTGCGCA < 41bp 0.811901712853525 0.583525960688962 0.78103715 0.30176678 prediction 0.456751504329125 Functional Loss - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6946229 chr12:6946231 nonsynonymous SNV 0.964 3 23 hm5C_associated_SNPs_76132 0 0 1 0 2 P3H3 chr12:6946149 3'AG 6946149 Downstream 83bp
chr12 6946231 6946231 1 + C T COAD 6946229 + 6946209 6946249 41 CATGAACGCTTCGAGGGGCTCACGGTGCTTAAGGCTGCGCA CATGAACGCTTCGAGGGGCTCATGGTGCTTAAGGCTGCGCA < 41bp 0.811901712853525 0.583525960688962 0.78103715 0.30176678 prediction 0.456751504329125 Functional Loss - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6946229 chr12:6946231 nonsynonymous SNV 0.964 3 23 hm5C_associated_SNPs_76132 0 0 1 0 2 P3H3 chr12:6946250 5'GT 6946250 Upstream 20bp
chr8 70513922 70513922 1 + G A LUSC 70513919 + 70513899 70513939 41 TGCTCGTGGAGACGGGGGAGCTGGAGAATACTTACATCATT TGCTCGTGGAGACGGGGGAGCTGAAGAATACTTACATCATT < 41bp 0.73963313876652 0.511257702134194 0.44846633 0.40527982 prediction 0.456750873264653 Functional Loss - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70513919 chr8:70513922 nonsynonymous SNV 0.992 2 24 hm5C_associated_SNPs_76133 0 0 0 0 1 SULF1 chr8:70513889 3'AG 70513889 Downstream 34bp
chr19 58790459 58790459 1 + G A LUSC 58790456 + 58790436 58790476 41 GGGCGATCCAGCATGGACCCCGAGGACGAAGGGGTAGCGGG GGGCGATCCAGCATGGACCCCGAAGACGAAGGGGTAGCGGG < 41bp 0.781515425505319 0.55314031591878 0.793013 0.31673497 prediction 0.456750219173077 Functional Loss - ZNF8 ENSG00000083842;ENSG00000267216;ENSG00000273439 CDS Human other chr19:58790456 chr19:58790459 synonymous SNV . 0 24 hm5C_associated_SNPs_76134 0 0 1 0 1 ZNF8 chr19:58790513 5'GT 58790513 Upstream 55bp
chr19 1053474 1053474 1 + C T GBM 1053472 + 1053452 1053492 41 ACTCTTCCGAGAGCTAGACACGCGGCTGGCGGAGCTGAGGC ACTCTTCCGAGAGCTAGACACGTGGCTGGCGGAGCTGAGGC < 41bp 0.781223654992033 0.552856970518054 0.8764523 0.9071723 prediction 0.456733368947958 Functional Loss - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1053472 chr19:1053474 nonsynonymous SNV 0.007 4 23 hm5C_associated_SNPs_76137 0 0 0 0 1 ABCA7 chr19:1053530 5'GT 1053530 Upstream 57bp
chr2 71883382 71883382 1 + G T UCEC 71883379 + 71883359 71883399 41 AGCTGTACCGGGGCAAGACGCAGGAGGAGACAGAAGATCCA AGCTGTACCGGGGCAAGACGCAGTAGGAGACAGAAGATCCA < 41bp 0.728366329793869 0.397382386680381 0.8591199 0.7311703 prediction 0.456732659587739 Functional Loss - DYSF ENSG00000135636 CDS Human protein_coding chr2:71883379 chr2:71883382 stopgain 0.999 1 24 hm5C_associated_SNPs_76138 0 0 0 0 2 DYSF chr2:71883292 3'AG 71883292 Downstream 91bp
chr2 71883382 71883382 1 + G T UCEC 71883379 + 71883359 71883399 41 AGCTGTACCGGGGCAAGACGCAGGAGGAGACAGAAGATCCA AGCTGTACCGGGGCAAGACGCAGTAGGAGACAGAAGATCCA < 41bp 0.728366329793869 0.397382386680381 0.8591199 0.7311703 prediction 0.456732659587739 Functional Loss - DYSF ENSG00000135636 CDS Human protein_coding chr2:71883379 chr2:71883382 stopgain 0.999 1 24 hm5C_associated_SNPs_76138 0 0 0 0 2 DYSF chr2:71883420 5'GT 71883420 Upstream 39bp
chr6 100056689 100056689 1 + G A UCEC 100056686 + 100056666 100056706 41 TGGAGTGGATAGGGTTAATCCGGGCAGCCAGAAACTCCCAG TGGAGTGGATAGGGTTAATCCGGACAGCCAGAAACTCCCAG < 41bp 0.77668344708579 0.548320213012092 0.90063405 0.51488256 prediction 0.456726468147395 Functional Loss - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100056686 chr6:100056689 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_76142 0 0 0 0 2 PRDM13 chr6:100056617 3'AG 100056617 Downstream 73bp
chr6 100056689 100056689 1 + G A UCEC 100056686 + 100056666 100056706 41 TGGAGTGGATAGGGTTAATCCGGGCAGCCAGAAACTCCCAG TGGAGTGGATAGGGTTAATCCGGACAGCCAGAAACTCCCAG < 41bp 0.77668344708579 0.548320213012092 0.90063405 0.51488256 prediction 0.456726468147395 Functional Loss - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100056686 chr6:100056689 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_76142 0 0 0 0 2 PRDM13 chr6:100056748 5'GT 100056748 Upstream 60bp
chr19 11018764 11018764 1 + G T BLCA 11018762 + 11018742 11018782 41 AAACCTGCCGGGGCCACACCCTGGAGCGGTCTGTGTTCAGC AAACCTGCCGGGGCCACACCCTTGAGCGGTCTGTGTTCAGC < 41bp 0.902341303606469 0.673979171281464 0.87249374 0.1539351 prediction 0.45672426465001 Functional Loss - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11018762 chr19:11018764 synonymous SNV . 0 23 hm5C_associated_SNPs_76143 0 0 1 0 2 CARM1 chr19:11018715 3'AG 11018715 Downstream 50bp
chr19 11018764 11018764 1 + G T BLCA 11018762 + 11018742 11018782 41 AAACCTGCCGGGGCCACACCCTGGAGCGGTCTGTGTTCAGC AAACCTGCCGGGGCCACACCCTTGAGCGGTCTGTGTTCAGC < 41bp 0.902341303606469 0.673979171281464 0.87249374 0.1539351 prediction 0.45672426465001 Functional Loss - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11018762 chr19:11018764 synonymous SNV . 0 23 hm5C_associated_SNPs_76143 0 0 1 0 2 CARM1 chr19:11018821 5'GT 11018821 Upstream 58bp
chr1 156105054 156105054 1 + G A LUSC 156105051 + 156105031 156105071 41 CCACGAGGAGCTGCAGCAGTCGCGCATCCGCATCGACAGCC CCACGAGGAGCTGCAGCAGTCGCACATCCGCATCGACAGCC < 41bp 0.765391839346166 0.537029777281558 0.6923276 0.3555978 prediction 0.456724124129217 Functional Loss - LMNA ENSG00000160789 CDS Human protein_coding chr1:156105051 chr1:156105054 nonsynonymous SNV 0.877 2 24 hm5C_associated_SNPs_76144 0 0 1 0 2 LMNA chr1:156104978 3'AG 156104978 Downstream 77bp
chr1 156105054 156105054 1 + G A LUSC 156105051 + 156105031 156105071 41 CCACGAGGAGCTGCAGCAGTCGCGCATCCGCATCGACAGCC CCACGAGGAGCTGCAGCAGTCGCACATCCGCATCGACAGCC < 41bp 0.765391839346166 0.537029777281558 0.6923276 0.3555978 prediction 0.456724124129217 Functional Loss - LMNA ENSG00000160789 CDS Human protein_coding chr1:156105051 chr1:156105054 nonsynonymous SNV 0.877 2 24 hm5C_associated_SNPs_76144 0 0 1 0 2 LMNA chr1:156105103 5'GT 156105103 Upstream 50bp
chr11 46404188 46404188 1 + G A PAAD 46404185 + 46404165 46404205 41 GGGTGCGTGTGATGGGGGCACAGGCACCAAAGTCCGCCAAG GGGTGCGTGTGATGGGGGCACAGACACCAAAGTCCGCCAAG < 41bp 0.760326149130695 0.531968266342847 0.8851019 0.42235506 prediction 0.456715765575695 Functional Loss - MDK ENSG00000110492 CDS Human protein_coding chr11:46404185 chr11:46404188 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_76147 0 0 1 0 1 MDK chr11:46404137 3'AG 46404137 Downstream 52bp
chrX 134709114 134709114 1 + T C STAD 134709113 + 134709093 134709133 41 ATCCAGACCAACCCAAAAGACTGCATACTTTTGGCAATCCG ATCCAGACCAACCCAAAAGACCGCATACTTTTGGCAATCCG < 41bp 0.72835770121184 0.461459990961549 0.16361147 0.024440825 prediction 0.45671540242368 Functional Loss - INTS6L ENSG00000165359 CDS Human protein_coding chrX:134709113 chrX:134709114 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_76148 0 0 0 0 1 INTS6L chrX:134709151 5'GT 134709151 Upstream 38bp
chr19 501701 501701 1 + G A SARC 501698 + 501678 501718 41 GCCCGACCTCCCCGGAGCCTCCCGACACCACCTCCCCGGAG GCCCGACCTCCCCGGAGCCTCCCAACACCACCTCCCCGGAG < 41bp 0.793555703015958 0.565199847541433 0.093063176 0.11319876 prediction 0.456711710949051 Functional Loss - MADCAM1 ENSG00000099866 CDS Human protein_coding chr19:501698 chr19:501701 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_76151 0 0 0 0 1 MADCAM1 chr19:501669 3'AG 501669 Downstream 33bp
chr12 10373129 10373129 1 + C T UCEC 10373127 + 10373107 10373147 41 GTCAACAACACCATCCCTCCCACCAGTGCTACCATGGGCCA GTCAACAACACCATCCCTCCCATCAGTGCTACCATGGGCCA < 41bp 0.845543044669387 0.617194993045186 0.25013596 0.046534628 prediction 0.4566961032484 Functional Loss - GABARAPL1 ENSG00000139112 CDS Human protein_coding chr12:10373127 chr12:10373129 nonsynonymous SNV 0.983 2 23 hm5C_associated_SNPs_76156 0 0 1 0 2 GABARAPL1 chr12:10373039 3'AG 10373039 Downstream 91bp
chr12 10373129 10373129 1 + C T UCEC 10373127 + 10373107 10373147 41 GTCAACAACACCATCCCTCCCACCAGTGCTACCATGGGCCA GTCAACAACACCATCCCTCCCATCAGTGCTACCATGGGCCA < 41bp 0.845543044669387 0.617194993045186 0.25013596 0.046534628 prediction 0.4566961032484 Functional Loss - GABARAPL1 ENSG00000139112 CDS Human protein_coding chr12:10373127 chr12:10373129 nonsynonymous SNV 0.983 2 23 hm5C_associated_SNPs_76156 0 0 1 0 2 GABARAPL1 chr12:10373157 5'GT 10373157 Upstream 29bp
chr20 62724217 62724217 1 + C T BLCA 62724215 + 62724195 62724235 41 GCCACGGCGCCTTCCTGCCCCTCGGGCTCAAGGTCACCATC GCCACGGCGCCTTCCTGCCCCTTGGGCTCAAGGTCACCATC < 41bp 0.8112573692232 0.582941044357288 0.20311886 0.14667493 prediction 0.456632649731824 Functional Loss - OPRL1 ENSG00000125510 CDS Human protein_coding chr20:62724215 chr20:62724217 synonymous SNV . 0 23 hm5C_associated_SNPs_76168 0 0 0 0 2 OPRL1 chr20:62724291 5'GT 62724291 Upstream 75bp
chr20 62724217 62724217 1 + C T BLCA 62724215 + 62724195 62724235 41 GCCACGGCGCCTTCCTGCCCCTCGGGCTCAAGGTCACCATC GCCACGGCGCCTTCCTGCCCCTTGGGCTCAAGGTCACCATC < 41bp 0.8112573692232 0.582941044357288 0.20311886 0.14667493 prediction 0.456632649731824 Functional Loss - OPRL1 ENSG00000125510 CDS Human protein_coding chr20:62724215 chr20:62724217 synonymous SNV . 0 23 hm5C_associated_SNPs_76168 0 0 0 0 2 OPRL1 chr20:62724306 5'GT 62724306 Upstream 90bp
chr22 18570802 18570802 1 + T C UCEC 18570801 + 18570781 18570821 41 CTTCCGCTGGATCCGGAAGGCTGCATTTTCTCGCCTCTACC CTTCCGCTGGATCCGGAAGGCCGCATTTTCTCGCCTCTACC < 41bp 0.778353490571635 0.550038019782096 0.16293594 0.15173033 prediction 0.456630941579076 Functional Loss - PEX26 ENSG00000215193 CDS Human protein_coding chr22:18570801 chr22:18570802 synonymous SNV . 0 22 hm5C_associated_SNPs_76169 0 0 1 0 1 PEX26 chr22:18570738 3'AG 18570738 Downstream 65bp
chr1 207073701 207073701 1 + C T BLCA 207073699 + 207073679 207073719 41 CAGGAGGTTCTGCAGAACGTCTCGGTAATCAGACCTCGGGG CAGGAGGTTCTGCAGAACGTCTTGGTAATCAGACCTCGGGG < 41bp 0.823195639665991 0.594887340128899 0.029550344 0.031339943 prediction 0.456616599074185 Functional Loss - IL24 ENSG00000162892 CDS Human protein_coding chr1:207073699 chr1:207073701 nonsynonymous SNV 0.980 2 23 hm5C_associated_SNPs_76174 0 0 0 3 2 IL24 chr1:207073640 3'AG 207073640 Downstream 62bp
chr1 207073701 207073701 1 + C T BLCA 207073699 + 207073679 207073719 41 CAGGAGGTTCTGCAGAACGTCTCGGTAATCAGACCTCGGGG CAGGAGGTTCTGCAGAACGTCTTGGTAATCAGACCTCGGGG < 41bp 0.823195639665991 0.594887340128899 0.029550344 0.031339943 prediction 0.456616599074185 Functional Loss - IL24 ENSG00000162892 CDS Human protein_coding chr1:207073699 chr1:207073701 nonsynonymous SNV 0.980 2 23 hm5C_associated_SNPs_76174 0 0 0 3 2 IL24 chr1:207073702 5'GT 207073702 Upstream 2bp
chr7 150417434 150417434 1 + G A GBM 150417431 + 150417411 150417451 41 CTCTCGGCCCCCGGACCCCACGCGCTGCTCCTGGTGACCCA CTCTCGGCCCCCGGACCCCACGCACTGCTCCTGGTGACCCA < 41bp 0.789156360575757 0.560851633479894 0.45475912 0.15984997 prediction 0.456609454191725 Functional Loss - GIMAP1;GIMAP1-GIMAP5 ENSG00000213203 CDS Human protein_coding chr7:150417431 chr7:150417434 synonymous SNV . 0 24 hm5C_associated_SNPs_76177 0 0 0 0 1 GIMAP1;GIMAP1-GIMAP5 chr7:150417494 5'GT 150417494 Upstream 61bp
chr15 41224579 41224579 1 + G A SKCM 41224576 + 41224556 41224596 41 TCCCCCACAATGGCTGTCGCCACGGCACCTGCAGCACTCCC TCCCCCACAATGGCTGTCGCCACAGCACCTGCAGCACTCCC < 41bp 0.761395774504519 0.533096280819492 0.089924484 0.65125555 prediction 0.456598987370053 Functional Loss - DLL4 ENSG00000128917 CDS Human protein_coding chr15:41224576 chr15:41224579 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_76179 0 0 0 0 2 DLL4 chr15:41224515 3'AG 41224515 Downstream 65bp
chr15 41224579 41224579 1 + G A SKCM 41224576 + 41224556 41224596 41 TCCCCCACAATGGCTGTCGCCACGGCACCTGCAGCACTCCC TCCCCCACAATGGCTGTCGCCACAGCACCTGCAGCACTCCC < 41bp 0.761395774504519 0.533096280819492 0.089924484 0.65125555 prediction 0.456598987370053 Functional Loss - DLL4 ENSG00000128917 CDS Human protein_coding chr15:41224576 chr15:41224579 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_76179 0 0 0 0 2 DLL4 chr15:41224645 5'GT 41224645 Upstream 67bp
chr17 12044531 12044531 1 + T C BRCA 12044530 + 12044510 12044550 41 CATGCTATGTTTGTAAAATCCTGGATCAAATGCCAGCTACT CATGCTATGTTTGTAAAATCCCGGATCAAATGCCAGCTACT < 41bp 0.771102229893999 0.542811898201262 0.6460912 0.5445826 prediction 0.456580663385475 Functional Loss - MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12044530 chr17:12044531 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_76185 0 0 1 0 1 MAP2K4 chr17:12044464 3'AG 12044464 Downstream 68bp
chrX 106046199 106046199 1 + G T BLCA 106046197 + 106046177 106046217 41 CGGGGCTACGGGGAGGAAGGCGGAGGGGGGCTCACAGGTAA CGGGGCTACGGGGAGGAAGGCGTAGGGGGGCTCACAGGTAA < 41bp 0.904771201575498 0.676483777649013 0.91222423 0.8897785 prediction 0.45657484785297 Functional Loss - TBC1D8B ENSG00000133138 CDS Human protein_coding chrX:106046197 chrX:106046199 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_76187 0 0 0 0 1 TBC1D8B chrX:106046213 5'GT 106046213 Upstream 15bp
chr22 32253535 32253535 1 + G T LUAD 32253532 + 32253512 32253552 41 TCCCACCTACATGGACAGCCCACGAAAGGTAAAGGAAGCCG TCCCACCTACATGGACAGCCCACTAAAGGTAAAGGAAGCCG < 41bp 0.728281753721097 0.370268681101344 0.09058678 0.23244366 prediction 0.456563507442194 Functional Loss - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32253532 chr22:32253535 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_76188 0 0 0 2 1 DEPDC5 chr22:32253539 5'GT 32253539 Upstream 5bp
chr9 40702714 40702714 1 + G A rs199602513 40702711 + 40702691 40702731 41 GCTCTCCGGTCCAGACCCCCCAGGTGAGGTGGGCGAAAGAG GCTCTCCGGTCCAGACCCCCCAGATGAGGTGGGCGAAAGAG < 41bp 0.775363606433468 0.547085098387973 0.5101457 0.41829002 prediction 0.456557016090989 Functional Loss - SPATA31A3 ENSG00000147926 CDS Human other chr9:40702711 chr9:40702714 nonsynonymous SNV 0.062 0 24 hm5C_associated_SNPs_76192 0 0 0 0 1 SPATA31A3 chr9:40702652 3'AG 40702652 Downstream 63bp
chr15 27185151 27185151 1 + C T COAD 27185148 + 27185128 27185168 41 GTCATCCAGACCTACCTTCCCTGCATAATGACCGTGATCTT GTCATCCAGACCTACCTTCCCTGTATAATGACCGTGATCTT < 41bp 0.748899288609529 0.520630282439098 0.06755048 0.042638004 prediction 0.456538012340862 Functional Loss - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27185148 chr15:27185151 synonymous SNV . 0 24 hm5C_associated_SNPs_76195 0 0 0 0 2 GABRA5 chr15:27185072 3'AG 27185072 Downstream 80bp
chr15 27185151 27185151 1 + C T COAD 27185148 + 27185128 27185168 41 GTCATCCAGACCTACCTTCCCTGCATAATGACCGTGATCTT GTCATCCAGACCTACCTTCCCTGTATAATGACCGTGATCTT < 41bp 0.748899288609529 0.520630282439098 0.06755048 0.042638004 prediction 0.456538012340862 Functional Loss - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27185148 chr15:27185151 synonymous SNV . 0 24 hm5C_associated_SNPs_76195 0 0 0 0 2 GABRA5 chr15:27185224 5'GT 27185224 Upstream 74bp
chr6 42986290 42986290 1 + G A UCEC 42986287 + 42986267 42986307 41 CCTGAGGGGCGCCGGAGCCACTCGGCCTGTGAGTGTTTGTT CCTGAGGGGCGCCGGAGCCACTCAGCCTGTGAGTGTTTGTT < 41bp 0.77611770846204 0.547871169519706 0.26879284 0.1851286 prediction 0.456493077884668 Functional Loss - KLHDC3 ENSG00000124702 CDS Human protein_coding chr6:42986287 chr6:42986290 synonymous SNV . 0 24 hm5C_associated_SNPs_76197 0 0 0 0 1 KLHDC3 chr6:42986294 5'GT 42986294 Upstream 5bp
chr7 99048377 99048377 1 + C T BLCA 99048375 + 99048355 99048395 41 GAGTCATCTGTGTGAATTACCTCGTGGGATTCTGCCCGGAG GAGTCATCTGTGTGAATTACCTTGTGGGATTCTGCCCGGAG < 41bp 0.8452941582928 0.617050627093283 0.04595822 0.0405007 prediction 0.456487062399033 Functional Loss - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99048375 chr7:99048377 synonymous SNV . 0 23 hm5C_associated_SNPs_76199 0 0 1 0 2 CPSF4 chr7:99048325 3'AG 99048325 Downstream 53bp
chr7 99048377 99048377 1 + C T BLCA 99048375 + 99048355 99048395 41 GAGTCATCTGTGTGAATTACCTCGTGGGATTCTGCCCGGAG GAGTCATCTGTGTGAATTACCTTGTGGGATTCTGCCCGGAG < 41bp 0.8452941582928 0.617050627093283 0.04595822 0.0405007 prediction 0.456487062399033 Functional Loss - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99048375 chr7:99048377 synonymous SNV . 0 23 hm5C_associated_SNPs_76199 0 0 1 0 2 CPSF4 chr7:99048418 5'GT 99048418 Upstream 42bp
chr12 118454653 118454653 1 + G A PRAD 118454650 + 118454630 118454670 41 GCCATGGAGACCTCAGCACTCAAGCAGCAGGAGCAGCCCGC GCCATGGAGACCTCAGCACTCAAACAGCAGGAGCAGCCCGC < 41bp 0.751502113286169 0.52326174209977 0.41794524 0.18728897 prediction 0.456480742372797 Functional Loss - RFC5 ENSG00000111445 CDS Human protein_coding chr12:118454650 chr12:118454653 synonymous SNV . 0 24 hm5C_associated_SNPs_76205 0 0 1 0 1 RFC5 chr12:118454697 5'GT 118454697 Upstream 45bp
chr12 123341590 123341590 1 + G A READ 123341587 + 123341567 123341607 41 GAGCAAGTCGGAGCTGAGCTCACGGCTGGACACGCTGAGTG GAGCAAGTCGGAGCTGAGCTCACAGCTGGACACGCTGAGTG < 41bp 0.788871776775033 0.560631885254043 0.8774883 0.56248593 prediction 0.45647978304198 Functional Loss - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123341587 chr12:123341590 nonsynonymous SNV 0.735 0 24 hm5C_associated_SNPs_76206 0 0 0 0 1 HIP1R chr12:123341568 3'AG 123341568 Downstream 23bp
chr18 52262267 52262267 1 + G T LUSC 52262264 + 52262244 52262284 41 TGATGTCTCTCCCAACTTAACTGGGGTCTGCGTGAACCCAG TGATGTCTCTCCCAACTTAACTGTGGTCTGCGTGAACCCAG < 41bp 0.926579031578387 0.698344217324365 0.8070493 0.11533061 prediction 0.456469628508045 Functional Loss - DYNAP ENSG00000178690 CDS Human protein_coding chr18:52262264 chr18:52262267 nonsynonymous SNV 0.476 3 24 hm5C_associated_SNPs_76210 0 0 0 0 2 DYNAP chr18:52262170 3'AG 52262170 Downstream 98bp
chr18 52262267 52262267 1 + G T LUSC 52262264 + 52262244 52262284 41 TGATGTCTCTCCCAACTTAACTGGGGTCTGCGTGAACCCAG TGATGTCTCTCCCAACTTAACTGTGGTCTGCGTGAACCCAG < 41bp 0.926579031578387 0.698344217324365 0.8070493 0.11533061 prediction 0.456469628508045 Functional Loss - DYNAP ENSG00000178690 CDS Human protein_coding chr18:52262264 chr18:52262267 nonsynonymous SNV 0.476 3 24 hm5C_associated_SNPs_76210 0 0 0 0 2 DYNAP chr18:52262334 5'GT 52262334 Upstream 68bp
chr3 150908620 150908620 1 + C T BLCA 150908618 + 150908598 150908638 41 ATACATGTGTACCCTCATATCTCGAGGAGATTTGTCAGTCA ATACATGTGTACCCTCATATCTTGAGGAGATTTGTCAGTCA < 41bp 0.846671739127067 0.618438051425619 0.89935565 0.4147615 prediction 0.456467375402896 Functional Loss - MED12L ENSG00000144893 CDS Human protein_coding chr3:150908618 chr3:150908620 stopgain 1.000 1 23 hm5C_associated_SNPs_76212 0 0 0 0 1 MED12L chr3:150908718 5'GT 150908718 Upstream 99bp
chr3 9962622 9962622 1 + C T rs139727834 9962620 + 9962600 9962640 41 TCTCCTCAGACTGCAGGGGGCTCGAAGTCTGGAACAGCATC TCTCCTCAGACTGCAGGGGGCTTGAAGTCTGGAACAGCATC < 41bp 0.728233538457659 0.465411837171808 0.22706956 0.37598437 prediction 0.456467076915319 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9962620 chr3:9962622 synonymous SNV . 0 23 hm5C_associated_SNPs_76213 0 0 1 0 2 IL17RC chr3:9962609 3'AG 9962609 Downstream 14bp
chr3 9962622 9962622 1 + C T rs139727834 9962620 + 9962600 9962640 41 TCTCCTCAGACTGCAGGGGGCTCGAAGTCTGGAACAGCATC TCTCCTCAGACTGCAGGGGGCTTGAAGTCTGGAACAGCATC < 41bp 0.728233538457659 0.465411837171808 0.22706956 0.37598437 prediction 0.456467076915319 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9962620 chr3:9962622 synonymous SNV . 0 23 hm5C_associated_SNPs_76213 0 0 1 0 2 IL17RC chr3:9962653 5'GT 9962653 Upstream 32bp
chr9 113538189 113538189 1 + A C DLBC 113538185 + 113538165 113538205 41 TTGCTGTCCGTGCCAGAATGCAGCAAGCTTCCCAGCATGCA TTGCTGTCCGTGCCAGAATGCAGCCAGCTTCCCAGCATGCA < 41bp 0.728231397721282 0.300137843395392 0.5490771 0.42912102 prediction 0.456462795442564 Functional Loss - MUSK ENSG00000030304 CDS Human protein_coding chr9:113538185 chr9:113538189 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_76214 0 0 0 0 1 MUSK chr9:113538243 5'GT 113538243 Upstream 55bp
chr8 48641525 48641525 1 + G T LUSC 48641523 + 48641503 48641543 41 TTTCCTGTGGGGACTGCTCCCGGGTGGTCACATCTCCTGTT TTTCCTGTGGGGACTGCTCCCGTGTGGTCACATCTCCTGTT < 41bp 0.728228423908159 0.41286716793269 0.9094279 0.6392362 prediction 0.456456847816317 Functional Loss - SPIDR ENSG00000164808 CDS Human protein_coding chr8:48641523 chr8:48641525 synonymous SNV . 0 23 hm5C_associated_SNPs_76215 0 0 1 0 2 SPIDR chr8:48641495 3'AG 48641495 Downstream 31bp
chr8 48641525 48641525 1 + G T LUSC 48641523 + 48641503 48641543 41 TTTCCTGTGGGGACTGCTCCCGGGTGGTCACATCTCCTGTT TTTCCTGTGGGGACTGCTCCCGTGTGGTCACATCTCCTGTT < 41bp 0.728228423908159 0.41286716793269 0.9094279 0.6392362 prediction 0.456456847816317 Functional Loss - SPIDR ENSG00000164808 CDS Human protein_coding chr8:48641523 chr8:48641525 synonymous SNV . 0 23 hm5C_associated_SNPs_76215 0 0 1 0 2 SPIDR chr8:48641609 5'GT 48641609 Upstream 85bp
chr17 47233932 47233932 1 + C T SKCM 47233930 + 47233910 47233950 41 TTTCCCTGTGTCCTCCAGGCCTCCAGTTTGAAGGACCCGAT TTTCCCTGTGTCCTCCAGGCCTTCAGTTTGAAGGACCCGAT < 41bp 0.728223306801692 0.434730514623054 0.9178956 0.08635858 prediction 0.456446613603385 Functional Loss - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47233930 chr17:47233932 synonymous SNV . 0 23 hm5C_associated_SNPs_76217 0 0 0 0 2 B4GALNT2 chr17:47233928 3'AG 47233928 Downstream 5bp
chr17 47233932 47233932 1 + C T SKCM 47233930 + 47233910 47233950 41 TTTCCCTGTGTCCTCCAGGCCTCCAGTTTGAAGGACCCGAT TTTCCCTGTGTCCTCCAGGCCTTCAGTTTGAAGGACCCGAT < 41bp 0.728223306801692 0.434730514623054 0.9178956 0.08635858 prediction 0.456446613603385 Functional Loss - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47233930 chr17:47233932 synonymous SNV . 0 23 hm5C_associated_SNPs_76217 0 0 0 0 2 B4GALNT2 chr17:47233965 5'GT 47233965 Upstream 34bp
chr2 172571877 172571877 1 + A C UCEC 172571873 + 172571853 172571893 41 ACTTGGAATGGCTAAAATCACGCAAGTCGACTTTCCTCCTC ACTTGGAATGGCTAAAATCACGCACGTCGACTTTCCTCCTC < 41bp 0.93082081837003 0.702600711613955 0.19194737 0.09913996 prediction 0.456440213512151 Functional Loss - DYNC1I2 ENSG00000077380 CDS Human protein_coding chr2:172571873 chr2:172571877 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_76218 0 0 0 0 2 DYNC1I2 chr2:172571838 3'AG 172571838 Downstream 40bp
chr2 172571877 172571877 1 + A C UCEC 172571873 + 172571853 172571893 41 ACTTGGAATGGCTAAAATCACGCAAGTCGACTTTCCTCCTC ACTTGGAATGGCTAAAATCACGCACGTCGACTTTCCTCCTC < 41bp 0.93082081837003 0.702600711613955 0.19194737 0.09913996 prediction 0.456440213512151 Functional Loss - DYNC1I2 ENSG00000077380 CDS Human protein_coding chr2:172571873 chr2:172571877 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_76218 0 0 0 0 2 DYNC1I2 chr2:172571953 5'GT 172571953 Upstream 77bp
chr11 60102457 60102457 1 + C T UCEC 60102455 + 60102435 60102475 41 CAAGCAGAGAAACCCGAACCCACCAACCAGGGGCAGGATAG CAAGCAGAGAAACCCGAACCCATCAACCAGGGGCAGGATAG < 41bp 0.808676714158233 0.580462222800181 0.09236553 0.042475253 prediction 0.456428982716103 Functional Loss - MS4A6E ENSG00000166926 CDS Human protein_coding chr11:60102455 chr11:60102457 nonsynonymous SNV 0.006 1 23 hm5C_associated_SNPs_76219 0 0 0 0 1 MS4A6E chr11:60102515 5'GT 60102515 Upstream 59bp
chr19 35610154 35610154 1 + G A DLBC 35610151 + 35610131 35610171 41 CGAGATGCCAGCCTTCCTGTCCCGGGTGAGCTGCGCACCCT CGAGATGCCAGCCTTCCTGTCCCAGGTGAGCTGCGCACCCT < 41bp 0.781906674249334 0.553695133451819 0.87195694 0.3810686 prediction 0.456423081595029 Functional Loss - FXYD3 ENSG00000089356 CDS Human protein_coding chr19:35610151 chr19:35610154 synonymous SNV . 0 24 hm5C_associated_SNPs_76220 0 0 0 0 2 FXYD3 chr19:35610072 3'AG 35610072 Downstream 83bp
chr19 35610154 35610154 1 + G A DLBC 35610151 + 35610131 35610171 41 CGAGATGCCAGCCTTCCTGTCCCGGGTGAGCTGCGCACCCT CGAGATGCCAGCCTTCCTGTCCCAGGTGAGCTGCGCACCCT < 41bp 0.781906674249334 0.553695133451819 0.87195694 0.3810686 prediction 0.456423081595029 Functional Loss - FXYD3 ENSG00000089356 CDS Human protein_coding chr19:35610151 chr19:35610154 synonymous SNV . 0 24 hm5C_associated_SNPs_76220 0 0 0 0 2 FXYD3 chr19:35610155 5'GT 35610155 Upstream 2bp
chr8 95653675 95653675 1 + G T OV 95653672 + 95653652 95653692 41 AAAGTCGTGGATCTGGCCAACAAGAAGGTATTTCTCCACAT AAAGTCGTGGATCTGGCCAACAATAAGGTATTTCTCCACAT < 41bp 0.72820847576345 0.356838691318235 0.44680107 0.16233453 prediction 0.456416951526901 Functional Loss - ESRP1 ENSG00000104413 CDS Human protein_coding chr8:95653672 chr8:95653675 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_76223 0 0 0 0 1 ESRP1 chr8:95653678 5'GT 95653678 Upstream 4bp
chr9 138439045 138439045 1 + G T UCEC 138439043 + 138439023 138439063 41 GGAGGGAGGATCGGTGCATCCAGAAGAAAATCCTGATGCGG GGAGGGAGGATCGGTGCATCCATAAGAAAATCCTGATGCGG < 41bp 0.903595988251812 0.675392954721927 0.6969207 0.14683646 prediction 0.456406067059769 Functional Loss - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138439043 chr9:138439045 stopgain 0.000 3 23 hm5C_associated_SNPs_76226 0 0 0 0 2 OBP2A chr9:138439024 3'AG 138439024 Downstream 22bp
chr9 138439045 138439045 1 + G T UCEC 138439043 + 138439023 138439063 41 GGAGGGAGGATCGGTGCATCCAGAAGAAAATCCTGATGCGG GGAGGGAGGATCGGTGCATCCATAAGAAAATCCTGATGCGG < 41bp 0.903595988251812 0.675392954721927 0.6969207 0.14683646 prediction 0.456406067059769 Functional Loss - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138439043 chr9:138439045 stopgain 0.000 3 23 hm5C_associated_SNPs_76226 0 0 0 0 2 OBP2A chr9:138439094 5'GT 138439094 Upstream 50bp
chr22 50615458 50615458 1 + C T COAD 50615456 + 50615436 50615476 41 TGCTGGACGGAGCTGCGGGACGCGCTGCCCGGCGTGGACGC TGCTGGACGGAGCTGCGGGACGTGCTGCCCGGCGTGGACGC < 41bp 0.789252654638722 0.561053231318323 0.10363904 0.17431515 prediction 0.456398846640799 Functional Loss - PANX2 ENSG00000073150 CDS Human protein_coding chr22:50615456 chr22:50615458 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_76229 0 0 1 0 1 PANX2 chr22:50615368 3'AG 50615368 Downstream 91bp
chr1 158153928 158153928 1 + G T UCEC 158153926 + 158153906 158153946 41 TATTCTCTCACAGTTCCTATCAGGGCGTCCTGTGACTCGCC TATTCTCTCACAGTTCCTATCATGGCGTCCTGTGACTCGCC < 41bp 0.728197026061638 0.379160456614608 0.9580436 0.9324887 prediction 0.456394052123276 Functional Loss - CD1D ENSG00000158473 CDS Human protein_coding chr1:158153926 chr1:158153928 nonsynonymous SNV 0.029 3 23 hm5C_associated_SNPs_76230 0 0 0 0 1 CD1D chr1:158153919 3'AG 158153919 Downstream 10bp
chr14 77722899 77722899 1 + G T UCEC 77722897 + 77722877 77722917 41 GGCCACCGTGCTGCAAGAACCGGAGTTGAATCTGACCCCCG GGCCACCGTGCTGCAAGAACCGTAGTTGAATCTGACCCCCG < 41bp 0.728194141830247 0.383743891204296 0.91854 0.45574656 prediction 0.456388283660495 Functional Loss - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77722897 chr14:77722899 stopgain 0.303 1 23 hm5C_associated_SNPs_76232 0 0 0 0 1 TMEM63C chr14:77722869 3'AG 77722869 Downstream 31bp
chr12 119419797 119419797 1 + C T READ 119419795 + 119419775 119419815 41 AGCATCATTGTCGCCAGTATCACGGCCCGCAAGCCGCTGCC AGCATCATTGTCGCCAGTATCATGGCCCGCAAGCCGCTGCC < 41bp 0.786754071525993 0.558560423244362 0.92105377 0.9213228 prediction 0.456387296563262 Functional Loss - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119419795 chr12:119419797 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_76233 0 0 0 0 1 SRRM4 chr12:119419818 5'GT 119419818 Upstream 22bp
chr2 239038788 239038788 1 + G A UCEC 239038785 + 239038765 239038805 41 CCAGGACAATGGTGGGAGCTCAGGCCCCACGGAGCAGGCGG CCAGGACAATGGTGGGAGCTCAGACCCCACGGAGCAGGCGG < 41bp 0.779401935261761 0.551209007650076 0.77120024 0.47470438 prediction 0.456385855223369 Functional Loss - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239038785 chr2:239038788 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_76235 0 0 0 0 1 ESPNL chr2:239038769 3'AG 239038769 Downstream 20bp
chr19 15654966 15654966 1 + G A UCEC 15654963 + 15654943 15654983 41 ACCCTCATCTCCCTGCAGGTCACGACACAACATCCAGTGGG ACCCTCATCTCCCTGCAGGTCACAACACAACATCCAGTGGG < 41bp 0.757822628720161 0.529630088889837 0.06258279 0.035975605 prediction 0.456385079660647 Functional Loss - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15654963 chr19:15654966 nonsynonymous SNV 0.987 4 24 hm5C_associated_SNPs_76236 0 0 0 0 1 CYP4F22 chr19:15654961 3'AG 15654961 Downstream 6bp
chr2 174229538 174229538 1 + C T STAD 174229536 + 174229516 174229556 41 TGTTTAGCAATCAAGGAGACCGCGAAGGCGTACATTCCCGG TGTTTAGCAATCAAGGAGACCGTGAAGGCGTACATTCCCGG < 41bp 0.841218628438016 0.613027706428816 0.31229734 0.19473648 prediction 0.456381844018399 Functional Loss - CDCA7 ENSG00000144354 CDS Human protein_coding chr2:174229536 chr2:174229538 stopgain 0.001 0 23 hm5C_associated_SNPs_76237 0 0 1 0 1 CDCA7 chr2:174229523 3'AG 174229523 Downstream 16bp
chrX 2999043 2999043 1 + C T rs138366402 2999041 + 2999021 2999061 41 CTAAAGAAGCAAGGATACAGCACGGGGCTTATAGGTAAGAC CTAAAGAAGCAAGGATACAGCATGGGGCTTATAGGTAAGAC < 41bp 0.802207399662677 0.574021410874035 0.33584034 0.43535638 prediction 0.456371977577284 Functional Loss - ARSF ENSG00000062096 CDS Human protein_coding chrX:2999041 chrX:2999043 nonsynonymous SNV 0.107 4 23 hm5C_associated_SNPs_76239 0 0 0 0 1 ARSF chrX:2999054 5'GT 2999054 Upstream 12bp
chr9 100071779 100071779 1 + G A BLCA 100071776 + 100071756 100071796 41 CTGAAGAGTGGCAGGATACCCATGATGAAGAAGGTGGAGAC CTGAAGAGTGGCAGGATACCCATAATGAAGAAGGTGGAGAC < 41bp 0.757661135742172 0.529482824076996 0.3502813 0.25123554 prediction 0.456356623330351 Functional Loss - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100071776 chr9:100071779 nonsynonymous SNV 0.281 0 24 hm5C_associated_SNPs_76241 0 0 1 0 1 CCDC180 chr9:100071696 3'AG 100071696 Downstream 84bp
chr12 25260772 25260772 1 + G T COAD 25260769 + 25260749 25260789 41 AGTTATGACACAATAGCTTCCTGGGCAACAAATCTCAAGTC AGTTATGACACAATAGCTTCCTGTGCAACAAATCTCAAGTC < 41bp 0.728175216119532 0.347049493596938 0.046345174 0.012393445 prediction 0.456350432239063 Functional Loss - LRMP ENSG00000118308 CDS Human protein_coding chr12:25260769 chr12:25260772 nonsynonymous SNV 0.760 2 24 hm5C_associated_SNPs_76242 0 0 1 0 1 LRMP chr12:25260751 3'AG 25260751 Downstream 22bp
chr18 66564511 66564511 1 + A C rs34102373 66564507 + 66564487 66564527 41 AGTGGGACAAGAGGGAAATACTTGAAAGAGAAAAGCAGGGA AGTGGGACAAGAGGGAAATACTTGCAAGAGAAAAGCAGGGA < 41bp 0.728163892729396 0.31132381946127 0.3642004 0.30828166 prediction 0.456327785458793 Functional Loss - CCDC102B ENSG00000150636 CDS Human protein_coding chr18:66564507 chr18:66564511 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_76245 0 0 0 0 1 CCDC102B chr18:66564456 3'AG 66564456 Downstream 56bp
chr9 135862164 135862164 1 + G T LUSC 135862162 + 135862142 135862182 41 TCTGGCCTCCTGCCCTTACCCCGGGTGAGTCAGAGCCCGGG TCTGGCCTCCTGCCCTTACCCCTGGTGAGTCAGAGCCCGGG < 41bp 0.905795023070019 0.677632100118938 0.9110658 0.19315326 prediction 0.456325845902163 Functional Loss - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135862162 chr9:135862164 synonymous SNV . 0 23 hm5C_associated_SNPs_76246 0 0 1 0 1 GFI1B chr9:135862165 5'GT 135862165 Upstream 2bp
chr2 89103910 89103910 1 + A T CESC 89103906 + 89103886 89103926 41 TGTTTTAGCTTCAAGAAACACAGGATCAACTTACAGCTACT TGTTTTAGCTTCAAGAAACACAGGTTCAACTTACAGCTACT < 41bp 0.72816119638632 0.450583782967613 0.7851759 0.74992454 prediction 0.45632239277264 Functional Loss - ANKRD36BP2 ENSG00000230006 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:89103906 chr2:89103910 . . 0 25 hm5C_associated_SNPs_76247 0 0 0 0 2 ANKRD36BP2 chr2:89103894 3'AG 89103894 Downstream 17bp
chr2 89103910 89103910 1 + A T CESC 89103906 + 89103886 89103926 41 TGTTTTAGCTTCAAGAAACACAGGATCAACTTACAGCTACT TGTTTTAGCTTCAAGAAACACAGGTTCAACTTACAGCTACT < 41bp 0.72816119638632 0.450583782967613 0.7851759 0.74992454 prediction 0.45632239277264 Functional Loss - ANKRD36BP2 ENSG00000230006 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:89103906 chr2:89103910 . . 0 25 hm5C_associated_SNPs_76247 0 0 0 0 2 ANKRD36BP2 chr2:89103964 5'GT 89103964 Upstream 55bp
chr16 28601690 28601690 1 + C T LUSC 28601688 + 28601668 28601708 41 ACCTGGAGACAAGGTGGCTGCCCGGGTGAAGGCCGTGGATG ACCTGGAGACAAGGTGGCTGCCTGGGTGAAGGCCGTGGATG < 41bp 0.817606639023827 0.589446591483526 0.73224527 0.47691524 prediction 0.456320095080603 Functional Loss - SGF29 ENSG00000176476 CDS Human protein_coding chr16:28601688 chr16:28601690 nonsynonymous SNV 0.916 4 23 hm5C_associated_SNPs_76248 0 0 0 0 2 SGF29 chr16:28601617 3'AG 28601617 Downstream 74bp
chr16 28601690 28601690 1 + C T LUSC 28601688 + 28601668 28601708 41 ACCTGGAGACAAGGTGGCTGCCCGGGTGAAGGCCGTGGATG ACCTGGAGACAAGGTGGCTGCCTGGGTGAAGGCCGTGGATG < 41bp 0.817606639023827 0.589446591483526 0.73224527 0.47691524 prediction 0.456320095080603 Functional Loss - SGF29 ENSG00000176476 CDS Human protein_coding chr16:28601688 chr16:28601690 nonsynonymous SNV 0.916 4 23 hm5C_associated_SNPs_76248 0 0 0 0 2 SGF29 chr16:28601763 5'GT 28601763 Upstream 74bp
chr15 41148250 41148250 1 + C T rs690365 41148248 + 41148228 41148268 41 AGCAGTGCCTCGAGTCTTGTCGCGGCATCTCCAGTGAGTGG AGCAGTGCCTCGAGTCTTGTCGTGGCATCTCCAGTGAGTGG < 41bp 0.79464472732934 0.566486994626249 0.348244 0.17196995 prediction 0.456315465406182 Functional Loss - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41148248 chr15:41148250 synonymous SNV . 0 23 hm5C_associated_SNPs_76251 0 0 0 0 1 SPINT1 chr15:41148260 5'GT 41148260 Upstream 11bp
chr19 5654163 5654163 1 + G A PAAD 5654160 + 5654140 5654180 41 GTGGAGAAAAGAGTAAGGACCAAGATGATCAGAAACCTGGC GTGGAGAAAAGAGTAAGGACCAAAATGATCAGAAACCTGGC < 41bp 0.769749318132899 0.541592083622622 0.7015432 0.40802872 prediction 0.456314469020553 Functional Loss - SAFB ENSG00000160633 CDS Human protein_coding chr19:5654160 chr19:5654163 nonsynonymous SNV 0.981 1 24 hm5C_associated_SNPs_76252 0 0 1 0 2 SAFB chr19:5654072 3'AG 5654072 Downstream 92bp
chr19 5654163 5654163 1 + G A PAAD 5654160 + 5654140 5654180 41 GTGGAGAAAAGAGTAAGGACCAAGATGATCAGAAACCTGGC GTGGAGAAAAGAGTAAGGACCAAAATGATCAGAAACCTGGC < 41bp 0.769749318132899 0.541592083622622 0.7015432 0.40802872 prediction 0.456314469020553 Functional Loss - SAFB ENSG00000160633 CDS Human protein_coding chr19:5654160 chr19:5654163 nonsynonymous SNV 0.981 1 24 hm5C_associated_SNPs_76252 0 0 1 0 2 SAFB chr19:5654211 5'GT 5654211 Upstream 49bp
chr1 898587 898587 1 + C T SKCM 898585 + 898565 898605 41 CTCCATGTCCACGCGCCGGGCCCGGGTGGGAGTGGCTGCGG CTCCATGTCCACGCGCCGGGCCTGGGTGGGAGTGGCTGCGG < 41bp 0.728147086882367 0.475776348761652 0.17452118 0.22445053 prediction 0.456294173764734 Functional Loss - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:898585 chr1:898587 nonsynonymous SNV 0.841 4 23 hm5C_associated_SNPs_76254 0 0 1 0 2 KLHL17 chr1:898489 3'AG 898489 Downstream 99bp
chr1 898587 898587 1 + C T SKCM 898585 + 898565 898605 41 CTCCATGTCCACGCGCCGGGCCCGGGTGGGAGTGGCTGCGG CTCCATGTCCACGCGCCGGGCCTGGGTGGGAGTGGCTGCGG < 41bp 0.728147086882367 0.475776348761652 0.17452118 0.22445053 prediction 0.456294173764734 Functional Loss - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:898585 chr1:898587 nonsynonymous SNV 0.841 4 23 hm5C_associated_SNPs_76254 0 0 1 0 2 KLHL17 chr1:898633 5'GT 898633 Upstream 47bp
chr3 32860396 32860396 1 + T C SKCM 32860395 + 32860375 32860415 41 TCTCAGTGTTTCCCGAGCGCCTCGGCTTCTGCCAGCACCAC TCTCAGTGTTTCCCGAGCGCCCCGGCTTCTGCCAGCACCAC < 41bp 0.731580777884807 0.503437771926366 0.3311196 0.35262966 prediction 0.456286011916883 Functional Loss - TRIM71 ENSG00000206557 CDS Human protein_coding chr3:32860395 chr3:32860396 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_76256 0 0 1 0 1 TRIM71 chr3:32860424 5'GT 32860424 Upstream 29bp
chr16 29845347 29845347 1 + C T LUAD 29845345 + 29845325 29845365 41 AGGCTCTGCGGCTCAGGGCCCGCAAGGAGTGCTGGGACCGG AGGCTCTGCGGCTCAGGGCCCGTAAGGAGTGCTGGGACCGG < 41bp 0.728141144794797 0.450622688341069 0.25348645 0.15395635 prediction 0.456282289589593 Functional Loss - MVP ENSG00000013364 CDS Human protein_coding chr16:29845345 chr16:29845347 synonymous SNV . 0 23 hm5C_associated_SNPs_76257 0 0 0 0 2 MVP chr16:29845256 3'AG 29845256 Downstream 92bp
chr16 29845347 29845347 1 + C T LUAD 29845345 + 29845325 29845365 41 AGGCTCTGCGGCTCAGGGCCCGCAAGGAGTGCTGGGACCGG AGGCTCTGCGGCTCAGGGCCCGTAAGGAGTGCTGGGACCGG < 41bp 0.728141144794797 0.450622688341069 0.25348645 0.15395635 prediction 0.456282289589593 Functional Loss - MVP ENSG00000013364 CDS Human protein_coding chr16:29845345 chr16:29845347 synonymous SNV . 0 23 hm5C_associated_SNPs_76257 0 0 0 0 2 MVP chr16:29845387 5'GT 29845387 Upstream 41bp
chr1 230891101 230891101 1 + G T UCEC 230891099 + 230891079 230891119 41 CCAGGAAATCGTGAAAAACCCAGAATTCATTCTTGGAGGGG CCAGGAAATCGTGAAAAACCCATAATTCATTCTTGGAGGGG < 41bp 0.728140973290227 0.379920843592485 0.9109824 0.32743114 prediction 0.456281946580453 Functional Loss - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230891099 chr1:230891101 stopgain 0.999 1 23 hm5C_associated_SNPs_76258 0 0 0 0 2 CAPN9 chr1:230891083 3'AG 230891083 Downstream 19bp
chr1 230891101 230891101 1 + G T UCEC 230891099 + 230891079 230891119 41 CCAGGAAATCGTGAAAAACCCAGAATTCATTCTTGGAGGGG CCAGGAAATCGTGAAAAACCCATAATTCATTCTTGGAGGGG < 41bp 0.728140973290227 0.379920843592485 0.9109824 0.32743114 prediction 0.456281946580453 Functional Loss - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230891099 chr1:230891101 stopgain 0.999 1 23 hm5C_associated_SNPs_76258 0 0 0 0 2 CAPN9 chr1:230891152 5'GT 230891152 Upstream 52bp
chrX 49105653 49105653 1 + A C UCEC 49105652 + 49105632 49105672 41 TGTCTGATACGAAGGAGCTTCAGAAGGAAATCAACTCCCTA TGTCTGATACGAAGGAGCTTCCGAAGGAAATCAACTCCCTA < 41bp 0.728138790372744 0.459401658451549 0.6044063 0.6888073 prediction 0.456277580745488 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49105652 chrX:49105653 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_76262 0 0 0 0 2 CCDC22 chrX:49105628 3'AG 49105628 Downstream 26bp
chrX 49105653 49105653 1 + A C UCEC 49105652 + 49105632 49105672 41 TGTCTGATACGAAGGAGCTTCAGAAGGAAATCAACTCCCTA TGTCTGATACGAAGGAGCTTCCGAAGGAAATCAACTCCCTA < 41bp 0.728138790372744 0.459401658451549 0.6044063 0.6888073 prediction 0.456277580745488 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49105652 chrX:49105653 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_76262 0 0 0 0 2 CCDC22 chrX:49105723 5'GT 49105723 Upstream 71bp
chr1 160182974 160182974 1 + A C ACC 160182973 + 160182953 160182993 41 CTCACTATGGTGGTTGACTACAGAACCCGTGTGCTGAAGAT CTCACTATGGTGGTTGACTACCGAACCCGTGTGCTGAAGAT < 41bp 0.800187229744205 0.572048448170881 0.23221874 0.15547511 prediction 0.456277563146648 Functional Loss - PEA15 ENSG00000162734 CDS Human protein_coding chr1:160182973 chr1:160182974 synonymous SNV . 0 22 hm5C_associated_SNPs_76263 0 0 1 0 2 PEA15 chr1:160182900 3'AG 160182900 Downstream 75bp
chr1 160182974 160182974 1 + A C ACC 160182973 + 160182953 160182993 41 CTCACTATGGTGGTTGACTACAGAACCCGTGTGCTGAAGAT CTCACTATGGTGGTTGACTACCGAACCCGTGTGCTGAAGAT < 41bp 0.800187229744205 0.572048448170881 0.23221874 0.15547511 prediction 0.456277563146648 Functional Loss - PEA15 ENSG00000162734 CDS Human protein_coding chr1:160182973 chr1:160182974 synonymous SNV . 0 22 hm5C_associated_SNPs_76263 0 0 1 0 2 PEA15 chr1:160183055 5'GT 160183055 Upstream 82bp
chr8 80567198 80567198 1 + C T SKCM 80567195 + 80567175 80567215 41 GCTTTGGAGGAGAACAACAACTTCAGCAAGATGGCGGAGGA GCTTTGGAGGAGAACAACAACTTTAGCAAGATGGCGGAGGA < 41bp 0.743684042748713 0.515546886054529 0.109202445 0.12555644 prediction 0.456274313388369 Functional Loss - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80567195 chr8:80567198 synonymous SNV . 0 24 hm5C_associated_SNPs_76264 0 0 0 1 2 STMN2 chr8:80567106 3'AG 80567106 Downstream 93bp
chr8 80567198 80567198 1 + C T SKCM 80567195 + 80567175 80567215 41 GCTTTGGAGGAGAACAACAACTTCAGCAAGATGGCGGAGGA GCTTTGGAGGAGAACAACAACTTTAGCAAGATGGCGGAGGA < 41bp 0.743684042748713 0.515546886054529 0.109202445 0.12555644 prediction 0.456274313388369 Functional Loss - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80567195 chr8:80567198 synonymous SNV . 0 24 hm5C_associated_SNPs_76264 0 0 0 1 2 STMN2 chr8:80567297 5'GT 80567297 Upstream 100bp
chr11 64875291 64875291 1 + G T SARC 64875289 + 64875269 64875309 41 CCCCAGGGGTCCACGCGCTGCTGCGGAAGCTGCAGTTCCTC CCCCAGGGGTCCACGCGCTGCTTCGGAAGCTGCAGTTCCTC < 41bp 0.728135037620251 0.378728841362141 0.71896815 0.11413771 prediction 0.456270075240503 Functional Loss - VPS51 ENSG00000149823 CDS Human protein_coding chr11:64875289 chr11:64875291 synonymous SNV . 0 23 hm5C_associated_SNPs_76265 0 0 1 0 1 VPS51 chr11:64875275 3'AG 64875275 Downstream 17bp
chr19 5135484 5135484 1 + G A COAD 5135481 + 5135461 5135501 41 TTCACCTCTGGCGGTGAGAACACGGAGCCGCTGCCTGCCAA TTCACCTCTGGCGGTGAGAACACAGAGCCGCTGCCTGCCAA < 41bp 0.797205532909755 0.569070962108929 0.923326 0.38144532 prediction 0.45626914160165 Functional Loss - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5135481 chr19:5135484 synonymous SNV . 0 24 hm5C_associated_SNPs_76266 0 0 1 0 1 KDM4B chr19:5135572 5'GT 5135572 Upstream 89bp
chr16 23208718 23208718 1 + A C STAD 23208717 + 23208697 23208737 41 TGTGGGAACAGAGATTGAGACAGCAATGGTCACCTCTATAG TGTGGGAACAGAGATTGAGACCGCAATGGTCACCTCTATAG < 41bp 0.821418910523663 0.593289210329625 0.14497826 0.036793232 prediction 0.456259400388076 Functional Loss - SCNN1G ENSG00000166828 CDS Human protein_coding chr16:23208717 chr16:23208718 synonymous SNV . 0 22 hm5C_associated_SNPs_76267 0 0 0 0 1 SCNN1G chr16:23208748 5'GT 23208748 Upstream 31bp
chr3 32200591 32200591 1 + G A SKCM 32200588 + 32200568 32200608 41 CAGGGTGGCCGAGGCCTTCGCCAGAACTGGGAAGGTAGCCC CAGGGTGGCCGAGGCCTTCGCCAAAACTGGGAAGGTAGCCC < 41bp 0.780478045365006 0.552350811459585 0.8911791 0.5589047 prediction 0.456254467810842 Functional Loss - GPD1L ENSG00000152642 CDS Human protein_coding chr3:32200588 chr3:32200591 nonsynonymous SNV 0.899 0 24 hm5C_associated_SNPs_76268 0 0 0 0 1 GPD1L chr3:32200601 5'GT 32200601 Upstream 11bp
chr13 28009581 28009581 1 + T C PAAD 28009580 + 28009560 28009600 41 ATTCCCAAAGGTCAAAAAATCTCGTGAAAAACGGAGTTTGG ATTCCCAAAGGTCAAAAAATCCCGTGAAAAACGGAGTTTGG < 41bp 0.741509008381975 0.513383479887171 0.37861782 0.4056943 prediction 0.456251056989608 Functional Loss - GTF3A ENSG00000122034 CDS Human protein_coding chr13:28009580 chr13:28009581 synonymous SNV . 0 22 hm5C_associated_SNPs_76269 0 0 1 0 1 GTF3A chr13:28009570 3'AG 28009570 Downstream 12bp
chr11 120702642 120702642 1 + G A OV 120702639 + 120702619 120702659 41 CGTCCGCATGCTGGATGACACCCGGGACCCCACCCCGCTCC CGTCCGCATGCTGGATGACACCCAGGACCCCACCCCGCTCC < 41bp 0.767066720451763 0.538945977806244 0.37460786 0.018483073 prediction 0.456241485291039 Functional Loss - GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120702639 chr11:120702642 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_76272 0 0 0 0 2 GRIK4 chr11:120702561 3'AG 120702561 Downstream 82bp
chr11 120702642 120702642 1 + G A OV 120702639 + 120702619 120702659 41 CGTCCGCATGCTGGATGACACCCGGGACCCCACCCCGCTCC CGTCCGCATGCTGGATGACACCCAGGACCCCACCCCGCTCC < 41bp 0.767066720451763 0.538945977806244 0.37460786 0.018483073 prediction 0.456241485291039 Functional Loss - GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120702639 chr11:120702642 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_76272 0 0 0 0 2 GRIK4 chr11:120702739 5'GT 120702739 Upstream 98bp
chr19 7734744 7734744 1 + G A BLCA 7734741 + 7734721 7734761 41 AGCAGCATTGGCCTGGAGTGCCAGAGCGTCACCTCCAGGGG AGCAGCATTGGCCTGGAGTGCCAAAGCGTCACCTCCAGGGG < 41bp 0.799132795749977 0.571019187062963 0.77465343 0.19816273 prediction 0.456227217374027 Functional Loss - RETN ENSG00000104918 CDS Human protein_coding chr19:7734741 chr19:7734744 synonymous SNV . 0 24 hm5C_associated_SNPs_76276 0 0 0 0 2 RETN chr19:7734707 3'AG 7734707 Downstream 38bp
chr19 7734744 7734744 1 + G A BLCA 7734741 + 7734721 7734761 41 AGCAGCATTGGCCTGGAGTGCCAGAGCGTCACCTCCAGGGG AGCAGCATTGGCCTGGAGTGCCAAAGCGTCACCTCCAGGGG < 41bp 0.799132795749977 0.571019187062963 0.77465343 0.19816273 prediction 0.456227217374027 Functional Loss - RETN ENSG00000104918 CDS Human protein_coding chr19:7734741 chr19:7734744 synonymous SNV . 0 24 hm5C_associated_SNPs_76276 0 0 0 0 2 RETN chr19:7734784 5'GT 7734784 Upstream 41bp
chr17 6941553 6941553 1 + G A CESC 6941550 + 6941530 6941570 41 CGCCGACGATCCCTGGCCACCGGGCTGGCACTGACAGGCGT CGCCGACGATCCCTGGCCACCGGACTGGCACTGACAGGCGT < 41bp 0.72810942576301 0.478535951753526 0.4493155 0.27518874 prediction 0.456218851526019 Functional Loss - SLC16A13 ENSG00000174327 CDS Human protein_coding chr17:6941550 chr17:6941553 synonymous SNV . 0 24 hm5C_associated_SNPs_76280 0 0 1 0 1 SLC16A13 chr17:6941471 3'AG 6941471 Downstream 83bp
chr11 10517233 10517233 1 + G A STAD 10517230 + 10517210 10517250 41 GCCTACTGGTTCATCCAGCACAAGGTCTACTCTCCCAACAT GCCTACTGGTTCATCCAGCACAAAGTCTACTCTCCCAACAT < 41bp 0.786320427453127 0.55821138977086 0.4840311 0.134639 prediction 0.456218075364534 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10517230 chr11:10517233 synonymous SNV . 0 24 hm5C_associated_SNPs_76281 0 0 1 0 1 AMPD3 chr11:10517280 5'GT 10517280 Upstream 48bp
chr22 18064150 18064150 1 + G A SKCM 18064147 + 18064127 18064167 41 CGACTGCCTGATGAAGACGGCTCGGGCGGAGGGCTTCTTCG CGACTGCCTGATGAAGACGGCTCAGGCGGAGGGCTTCTTCG < 41bp 0.790020441893647 0.561913181790477 0.29609454 0.14274296 prediction 0.456214520206339 Functional Loss - LOC101929372;SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18064147 chr22:18064150 nonsynonymous SNV 0.451 2 24 hm5C_associated_SNPs_76284 0 0 0 0 2 LOC101929372;SLC25A18 chr22:18064124 3'AG 18064124 Downstream 27bp
chr22 18064150 18064150 1 + G A SKCM 18064147 + 18064127 18064167 41 CGACTGCCTGATGAAGACGGCTCGGGCGGAGGGCTTCTTCG CGACTGCCTGATGAAGACGGCTCAGGCGGAGGGCTTCTTCG < 41bp 0.790020441893647 0.561913181790477 0.29609454 0.14274296 prediction 0.456214520206339 Functional Loss - LOC101929372;SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18064147 chr22:18064150 nonsynonymous SNV 0.451 2 24 hm5C_associated_SNPs_76284 0 0 0 0 2 LOC101929372;SLC25A18 chr22:18064179 5'GT 18064179 Upstream 30bp
chr19 2243439 2243439 1 + G A LUSC 2243436 + 2243416 2243456 41 CCATGGACTTCCAGCATCGCCCCGGGGGCAAGACCGGGAGC CCATGGACTTCCAGCATCGCCCCAGGGGCAAGACCGGGAGC < 41bp 0.784473205259955 0.5563667657211 0.3509336 0.13421604 prediction 0.45621287907771 Functional Loss - SF3A2 ENSG00000104897 CDS Human protein_coding chr19:2243436 chr19:2243439 nonsynonymous SNV 0.937 4 24 hm5C_associated_SNPs_76286 0 0 1 0 1 SF3A2 chr19:2243381 3'AG 2243381 Downstream 59bp
chr20 42679966 42679966 1 + G T LUAD 42679963 + 42679943 42679983 41 TAGATCCAGGAGATGGTCCACTCGGAAGTGGCTGCCTATGA TAGATCCAGGAGATGGTCCACTCTGAAGTGGCTGCCTATGA < 41bp 0.728104061581966 0.335494814820709 0.075947374 0.05486536 prediction 0.456208123163933 Functional Loss - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42679963 chr20:42679966 synonymous SNV . 0 24 hm5C_associated_SNPs_76288 0 0 0 0 1 TOX2 chr20:42679946 3'AG 42679946 Downstream 21bp
chr9 140773562 140773562 1 + T C COAD 140773561 + 140773541 140773581 41 CCAACTGCATCGTGCTGGCCCTGGAGCAGCACCTCCCTGAT CCAACTGCATCGTGCTGGCCCCGGAGCAGCACCTCCCTGAT < 41bp 0.747636407233435 0.519534303852884 0.29594305 0.52441263 prediction 0.456204206761101 Functional Loss - CACNA1B ENSG00000148408 CDS Human protein_coding chr9:140773561 chr9:140773562 nonsynonymous SNV 0.969 3 22 hm5C_associated_SNPs_76289 0 0 0 0 1 CACNA1B chr9:140773611 5'GT 140773611 Upstream 50bp
chr8 10555482 10555482 1 + G A rs149597169 10555479 + 10555459 10555499 41 CAGAAGGCGTTCGCTGCCGCCGCGCCTGCGCAGCCCGGCCA CAGAAGGCGTTCGCTGCCGCCGCACCTGCGCAGCCCGGCCA < 41bp 0.783762026824884 0.555662179241675 0.26248065 0.2778718 prediction 0.456199695166418 Functional Loss - C8orf74 ENSG00000171060 CDS Human protein_coding chr8:10555479 chr8:10555482 synonymous SNV . 0 24 hm5C_associated_SNPs_76291 0 0 0 0 1 C8orf74 chr8:10555515 5'GT 10555515 Upstream 34bp
chr2 70485372 70485372 1 + G A CESC 70485369 + 70485349 70485389 41 TGCTGTGCAGCTGCGGATGCCCCGAGGGCGCCGAGCTGCGT TGCTGTGCAGCTGCGGATGCCCCAAGGGCGCCGAGCTGCGT < 41bp 0.747580967278457 0.51948257848174 0.11634904 0.32172704 prediction 0.456196777593433 Functional Loss - PCYOX1 ENSG00000116005 CDS Human protein_coding chr2:70485369 chr2:70485372 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_76292 0 0 1 0 1 PCYOX1 chr2:70485408 5'GT 70485408 Upstream 37bp
chr2 27373017 27373017 1 + G A BLCA 27373014 + 27372994 27373034 41 GAGGCCAGTCCTGAGAATGCCGCGCGGGAGCGGAGCCGGGT GAGGCCAGTCCTGAGAATGCCGCACGGGAGCGGAGCCGGGT < 41bp 0.72809506926976 0.485597990804323 0.35531443 0.16062155 prediction 0.45619013853952 Functional Loss - TCF23 ENSG00000163792 CDS Human protein_coding chr2:27373014 chr2:27373017 synonymous SNV . 0 24 hm5C_associated_SNPs_76293 0 0 0 0 1 TCF23 chr2:27372991 3'AG 27372991 Downstream 27bp
chrX 44928907 44928907 1 + C T LUAD 44928905 + 44928885 44928925 41 CCACTGGGCCTTCCCAGCATCTCCAGGCAGCTGGCTCTGGT CCACTGGGCCTTCCCAGCATCTTCAGGCAGCTGGCTCTGGT < 41bp 0.728092150365871 0.425742731941042 0.95574486 0.20775995 prediction 0.456184300731743 Functional Loss - KDM6A ENSG00000147050 CDS Human protein_coding chrX:44928905 chrX:44928907 synonymous SNV . 0 23 hm5C_associated_SNPs_76296 0 0 1 0 1 KDM6A chrX:44928824 3'AG 44928824 Downstream 84bp
chr19 13051231 13051231 1 + G A COAD 13051228 + 13051208 13051248 41 AACCGGAAGACTGGGATGAGCGGGCCAAGATCGATGATCCC AACCGGAAGACTGGGATGAGCGGACCAAGATCGATGATCCC < 41bp 0.72808933548063 0.48606681819198 0.8570601 0.6884311 prediction 0.456178670961261 Functional Loss - CALR ENSG00000179218 CDS Human protein_coding chr19:13051228 chr19:13051231 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_76298 0 0 1 0 1 CALR chr19:13051266 5'GT 13051266 Upstream 36bp
chr1 178490416 178490416 1 + A C rs187831526 178490415 + 178490395 178490435 41 TCGGGGTAGGTAGATTCATACAAGATGTGCCTTTTCTCGAT TCGGGGTAGGTAGATTCATACCAGATGTGCCTTTTCTCGAT < 41bp 0.797151908410928 0.56906984926194 0.7253161 0.8186239 prediction 0.456164118297977 Functional Loss - TEX35 ENSG00000240021 UTR3 Human protein_coding chr1:178490415 chr1:178490416 . . 0 22 hm5C_associated_SNPs_76300 0 0 0 0 1 TEX35 chr1:178490357 3'AG 178490357 Downstream 60bp
chr12 122623425 122623425 1 + G A SKCM 122623422 + 122623402 122623442 41 ACCCGGCGCCAGTTTGATCACATGAAAGACATGTTTGACGA ACCCGGCGCCAGTTTGATCACATAAAAGACATGTTTGACGA < 41bp 0.742691839723933 0.51461114988872 0.45965412 0.3940984 prediction 0.456161379670425 Functional Loss - MLXIP ENSG00000175727 CDS Human protein_coding chr12:122623422 chr12:122623425 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_76302 0 0 1 0 2 MLXIP chr12:122623362 3'AG 122623362 Downstream 64bp
chr12 122623425 122623425 1 + G A SKCM 122623422 + 122623402 122623442 41 ACCCGGCGCCAGTTTGATCACATGAAAGACATGTTTGACGA ACCCGGCGCCAGTTTGATCACATAAAAGACATGTTTGACGA < 41bp 0.742691839723933 0.51461114988872 0.45965412 0.3940984 prediction 0.456161379670425 Functional Loss - MLXIP ENSG00000175727 CDS Human protein_coding chr12:122623422 chr12:122623425 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_76302 0 0 1 0 2 MLXIP chr12:122623485 5'GT 122623485 Upstream 61bp
chr1 158326582 158326582 1 + C T SKCM 158326580 + 158326560 158326600 41 CTTTCTCATGGGAGCCAACACTCAGGACACCAAGAATTCAA CTTTCTCATGGGAGCCAACACTTAGGACACCAAGAATTCAA < 41bp 0.72807412478999 0.497962224995182 0.014237165 0.017543226 prediction 0.456148249579979 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158326580 chr1:158326582 stopgain 0.001 0 23 hm5C_associated_SNPs_76307 0 0 0 0 2 CD1E chr1:158326518 3'AG 158326518 Downstream 65bp
chr1 158326582 158326582 1 + C T SKCM 158326580 + 158326560 158326600 41 CTTTCTCATGGGAGCCAACACTCAGGACACCAAGAATTCAA CTTTCTCATGGGAGCCAACACTTAGGACACCAAGAATTCAA < 41bp 0.72807412478999 0.497962224995182 0.014237165 0.017543226 prediction 0.456148249579979 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158326580 chr1:158326582 stopgain 0.001 0 23 hm5C_associated_SNPs_76307 0 0 0 0 2 CD1E chr1:158326554 3'AG 158326554 Downstream 29bp
chr15 63336325 63336325 1 + G T STAD 63336322 + 63336302 63336342 41 TCAAAGATGCCCAGGAGAAGCTGGAGCTGGCAGAGAAAAAG TCAAAGATGCCCAGGAGAAGCTGTAGCTGGCAGAGAAAAAG < 41bp 0.910412458838633 0.682342170668892 0.4082287 0.20788538 prediction 0.456140576339484 Functional Loss - TPM1 ENSG00000140416 CDS Human protein_coding chr15:63336322 chr15:63336325 stopgain 1.000 1 24 hm5C_associated_SNPs_76309 0 0 1 0 2 TPM1 chr15:63336226 3'AG 63336226 Downstream 100bp
chr15 63336325 63336325 1 + G T STAD 63336322 + 63336302 63336342 41 TCAAAGATGCCCAGGAGAAGCTGGAGCTGGCAGAGAAAAAG TCAAAGATGCCCAGGAGAAGCTGTAGCTGGCAGAGAAAAAG < 41bp 0.910412458838633 0.682342170668892 0.4082287 0.20788538 prediction 0.456140576339484 Functional Loss - TPM1 ENSG00000140416 CDS Human protein_coding chr15:63336322 chr15:63336325 stopgain 1.000 1 24 hm5C_associated_SNPs_76309 0 0 1 0 2 TPM1 chr15:63336351 5'GT 63336351 Upstream 27bp
chr10 26562595 26562595 1 + C T UCEC 26562593 + 26562573 26562613 41 GGGTGGGGGATTACTGATGTCCCGAAAACACAAGTGGAAAC GGGTGGGGGATTACTGATGTCCTGAAAACACAAGTGGAAAC < 41bp 0.72806960750653 0.436182777444099 0.30552083 0.30019847 prediction 0.45613921501306 Functional Loss - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26562593 chr10:26562595 stopgain 0.997 1 23 hm5C_associated_SNPs_76310 0 0 0 0 2 GAD2 chr10:26562565 3'AG 26562565 Downstream 31bp
chr10 26562595 26562595 1 + C T UCEC 26562593 + 26562573 26562613 41 GGGTGGGGGATTACTGATGTCCCGAAAACACAAGTGGAAAC GGGTGGGGGATTACTGATGTCCTGAAAACACAAGTGGAAAC < 41bp 0.72806960750653 0.436182777444099 0.30552083 0.30019847 prediction 0.45613921501306 Functional Loss - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26562593 chr10:26562595 stopgain 0.997 1 23 hm5C_associated_SNPs_76310 0 0 0 0 2 GAD2 chr10:26562629 5'GT 26562629 Upstream 35bp
chr8 61496798 61496798 1 + G T UCEC 61496795 + 61496775 61496815 41 AGAATCCTTTCGTTCCATCACAAGGTCGTATTACAGAGGTG AGAATCCTTTCGTTCCATCACAATGTCGTATTACAGAGGTG < 41bp 0.72806421083939 0.333157679697675 0.6950297 0.10136896 prediction 0.456128421678779 Functional Loss - RAB2A ENSG00000104388 CDS Human protein_coding chr8:61496795 chr8:61496798 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_76314 0 0 1 0 2 RAB2A chr8:61496767 3'AG 61496767 Downstream 32bp
chr8 61496798 61496798 1 + G T UCEC 61496795 + 61496775 61496815 41 AGAATCCTTTCGTTCCATCACAAGGTCGTATTACAGAGGTG AGAATCCTTTCGTTCCATCACAATGTCGTATTACAGAGGTG < 41bp 0.72806421083939 0.333157679697675 0.6950297 0.10136896 prediction 0.456128421678779 Functional Loss - RAB2A ENSG00000104388 CDS Human protein_coding chr8:61496795 chr8:61496798 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_76314 0 0 1 0 2 RAB2A chr8:61496849 5'GT 61496849 Upstream 52bp
chr20 32378854 32378854 1 + C T rs558538914 32378852 + 32378832 32378872 41 TTCAGCCGCCGTGCCCACCTCGCCGAGCATCAGCGCGCCCA TTCAGCCGCCGTGCCCACCTCGTCGAGCATCAGCGCGCCCA < 41bp 0.816598903523455 0.588534814264271 0.55460346 0.3618262 prediction 0.456128178518367 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32378852 chr20:32378854 nonsynonymous SNV 0.925 0 23 hm5C_associated_SNPs_76315 0 0 1 0 1 ZNF341 chr20:32378794 3'AG 32378794 Downstream 61bp
chr16 2086453 2086453 1 + G A STAD 2086450 + 2086430 2086470 41 CAGTACATCCGCTCTGTGGACCCGGGCTCACCTGCCGCCCG CAGTACATCCGCTCTGTGGACCCAGGCTCACCTGCCGCCCG < 41bp 0.728062738076196 0.483212510428638 0.7897475 0.30864626 prediction 0.456125476152392 Functional Loss - SLC9A3R2 ENSG00000065054 CDS Human protein_coding chr16:2086450 chr16:2086453 synonymous SNV . 0 24 hm5C_associated_SNPs_76316 0 0 1 0 1 SLC9A3R2 chr16:2086504 5'GT 2086504 Upstream 52bp
chr19 4154995 4154995 1 + G A SKCM 4154992 + 4154972 4155012 41 GCATCCTGAGACACGTGGAGCTGGGCGAGGGCTGGGGTCAC GCATCCTGAGACACGTGGAGCTGAGCGAGGGCTGGGGTCAC < 41bp 0.782010336328529 0.553948192518458 0.82144725 0.7799732 prediction 0.456124287620142 Functional Loss - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4154992 chr19:4154995 nonsynonymous SNV 0.140 1 24 hm5C_associated_SNPs_76317 0 0 1 0 2 CREB3L3 chr19:4154896 3'AG 4154896 Downstream 100bp
chr19 4154995 4154995 1 + G A SKCM 4154992 + 4154972 4155012 41 GCATCCTGAGACACGTGGAGCTGGGCGAGGGCTGGGGTCAC GCATCCTGAGACACGTGGAGCTGAGCGAGGGCTGGGGTCAC < 41bp 0.782010336328529 0.553948192518458 0.82144725 0.7799732 prediction 0.456124287620142 Functional Loss - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4154992 chr19:4154995 nonsynonymous SNV 0.140 1 24 hm5C_associated_SNPs_76317 0 0 1 0 2 CREB3L3 chr19:4155024 5'GT 4155024 Upstream 30bp
chr9 137020841 137020841 1 + G A UCEC 137020838 + 137020818 137020858 41 CTGAAGACGTACACTGGCCACAAGAATGAGAAATACTGCAT CTGAAGACGTACACTGGCCACAAAAATGAGAAATACTGCAT < 41bp 0.728059667298304 0.494690648516736 0.06268364 0.05875662 prediction 0.456119334596607 Functional Loss - WDR5 ENSG00000196363 CDS Human protein_coding chr9:137020838 chr9:137020841 synonymous SNV . 0 24 hm5C_associated_SNPs_76318 0 0 1 0 2 WDR5 chr9:137020815 3'AG 137020815 Downstream 27bp
chr9 137020841 137020841 1 + G A UCEC 137020838 + 137020818 137020858 41 CTGAAGACGTACACTGGCCACAAGAATGAGAAATACTGCAT CTGAAGACGTACACTGGCCACAAAAATGAGAAATACTGCAT < 41bp 0.728059667298304 0.494690648516736 0.06268364 0.05875662 prediction 0.456119334596607 Functional Loss - WDR5 ENSG00000196363 CDS Human protein_coding chr9:137020838 chr9:137020841 synonymous SNV . 0 24 hm5C_associated_SNPs_76318 0 0 1 0 2 WDR5 chr9:137020889 5'GT 137020889 Upstream 49bp
chr9 137020839 137020839 1 + A C UCEC 137020838 + 137020818 137020858 41 CTGAAGACGTACACTGGCCACAAGAATGAGAAATACTGCAT CTGAAGACGTACACTGGCCACCAGAATGAGAAATACTGCAT < 41bp 0.728059667298304 0.457874472428997 0.06268364 0.07227206 prediction 0.456119334596607 Functional Loss - WDR5 ENSG00000196363 CDS Human protein_coding chr9:137020838 chr9:137020839 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_76319 0 0 1 0 2 WDR5 chr9:137020815 3'AG 137020815 Downstream 25bp
chr9 137020839 137020839 1 + A C UCEC 137020838 + 137020818 137020858 41 CTGAAGACGTACACTGGCCACAAGAATGAGAAATACTGCAT CTGAAGACGTACACTGGCCACCAGAATGAGAAATACTGCAT < 41bp 0.728059667298304 0.457874472428997 0.06268364 0.07227206 prediction 0.456119334596607 Functional Loss - WDR5 ENSG00000196363 CDS Human protein_coding chr9:137020838 chr9:137020839 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_76319 0 0 1 0 2 WDR5 chr9:137020889 5'GT 137020889 Upstream 51bp
chr10 43600550 43600550 1 + C T SKCM 43600548 + 43600528 43600568 41 GAGGTGGTGATGGTGCCCTTCCCGGTGACCGTGTACGACGA GAGGTGGTGATGGTGCCCTTCCTGGTGACCGTGTACGACGA < 41bp 0.728059355714277 0.456802034668196 0.34280285 0.20693135 prediction 0.456118711428554 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43600548 chr10:43600550 nonsynonymous SNV 0.219 0 23 hm5C_associated_SNPs_76320 1 0 0 0 1 RET chr10:43600641 5'GT 43600641 Upstream 92bp
chr19 3290270 3290270 1 + G T CESC 3290267 + 3290247 3290287 41 TGTTTATCTACCACCTCCCCCAGGAGTTTGGAGACACGGAG TGTTTATCTACCACCTCCCCCAGTAGTTTGGAGACACGGAG < 41bp 0.72805815607268 0.340543836384674 0.81808555 0.21053737 prediction 0.456116312145361 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3290267 chr19:3290270 stopgain 1.000 3 24 hm5C_associated_SNPs_76321 0 0 0 0 2 CELF5 chr19:3290229 3'AG 3290229 Downstream 42bp
chr19 3290270 3290270 1 + G T CESC 3290267 + 3290247 3290287 41 TGTTTATCTACCACCTCCCCCAGGAGTTTGGAGACACGGAG TGTTTATCTACCACCTCCCCCAGTAGTTTGGAGACACGGAG < 41bp 0.72805815607268 0.340543836384674 0.81808555 0.21053737 prediction 0.456116312145361 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3290267 chr19:3290270 stopgain 1.000 3 24 hm5C_associated_SNPs_76321 0 0 0 0 2 CELF5 chr19:3290270 3'AG 3290270 Downstream 1bp
chr9 37428495 37428495 1 + C T CESC 37428493 + 37428473 37428513 41 CCCCTCAGTGGTGGCTGGACCTCGTGGAAGCCCCTCTGGCT CCCCTCAGTGGTGGCTGGACCTTGTGGAAGCCCCTCTGGCT < 41bp 0.79530649318115 0.567250475896224 0.47078228 0.16762584 prediction 0.456112034569853 Functional Loss - GRHPR ENSG00000137106 CDS Human protein_coding chr9:37428493 chr9:37428495 nonsynonymous SNV 0.987 0 23 hm5C_associated_SNPs_76322 0 0 1 0 2 GRHPR chr9:37428481 3'AG 37428481 Downstream 15bp
chr9 37428495 37428495 1 + C T CESC 37428493 + 37428473 37428513 41 CCCCTCAGTGGTGGCTGGACCTCGTGGAAGCCCCTCTGGCT CCCCTCAGTGGTGGCTGGACCTTGTGGAAGCCCCTCTGGCT < 41bp 0.79530649318115 0.567250475896224 0.47078228 0.16762584 prediction 0.456112034569853 Functional Loss - GRHPR ENSG00000137106 CDS Human protein_coding chr9:37428493 chr9:37428495 nonsynonymous SNV 0.987 0 23 hm5C_associated_SNPs_76322 0 0 1 0 2 GRHPR chr9:37428569 5'GT 37428569 Upstream 75bp
chr11 63276291 63276291 1 + G A UCEC 63276288 + 63276268 63276308 41 GTGTGGCTGCAGCCTGTGTCCCCGGCCAGATATCGCCTTCC GTGTGGCTGCAGCCTGTGTCCCCAGCCAGATATCGCCTTCC < 41bp 0.787753575384072 0.559701461115958 0.16151547 0.09070721 prediction 0.456104228536228 Functional Loss - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63276288 chr11:63276291 nonsynonymous SNV 0.142 0 24 hm5C_associated_SNPs_76324 0 0 0 0 3 LGALS12 chr11:63276247 3'AG 63276247 Downstream 45bp
chr11 63276291 63276291 1 + G A UCEC 63276288 + 63276268 63276308 41 GTGTGGCTGCAGCCTGTGTCCCCGGCCAGATATCGCCTTCC GTGTGGCTGCAGCCTGTGTCCCCAGCCAGATATCGCCTTCC < 41bp 0.787753575384072 0.559701461115958 0.16151547 0.09070721 prediction 0.456104228536228 Functional Loss - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63276288 chr11:63276291 nonsynonymous SNV 0.142 0 24 hm5C_associated_SNPs_76324 0 0 0 0 3 LGALS12 chr11:63276250 3'AG 63276250 Downstream 42bp
chr11 63276291 63276291 1 + G A UCEC 63276288 + 63276268 63276308 41 GTGTGGCTGCAGCCTGTGTCCCCGGCCAGATATCGCCTTCC GTGTGGCTGCAGCCTGTGTCCCCAGCCAGATATCGCCTTCC < 41bp 0.787753575384072 0.559701461115958 0.16151547 0.09070721 prediction 0.456104228536228 Functional Loss - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63276288 chr11:63276291 nonsynonymous SNV 0.142 0 24 hm5C_associated_SNPs_76324 0 0 0 0 3 LGALS12 chr11:63276257 3'AG 63276257 Downstream 35bp
chr2 119739083 119739083 1 + G T COAD 119739081 + 119739061 119739101 41 CTTCGGGAGGCCAGGCCCACCAGGTAAGAGGGCACGTGGTC CTTCGGGAGGCCAGGCCCACCATGTAAGAGGGCACGTGGTC < 41bp 0.728044910887636 0.370371842634796 0.9295099 0.3375334 prediction 0.456089821775273 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119739081 chr2:119739083 nonsynonymous SNV 0.870 5 23 hm5C_associated_SNPs_76326 0 0 0 0 2 MARCO chr2:119738985 3'AG 119738985 Downstream 99bp
chr2 119739083 119739083 1 + G T COAD 119739081 + 119739061 119739101 41 CTTCGGGAGGCCAGGCCCACCAGGTAAGAGGGCACGTGGTC CTTCGGGAGGCCAGGCCCACCATGTAAGAGGGCACGTGGTC < 41bp 0.728044910887636 0.370371842634796 0.9295099 0.3375334 prediction 0.456089821775273 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119739081 chr2:119739083 nonsynonymous SNV 0.870 5 23 hm5C_associated_SNPs_76326 0 0 0 0 2 MARCO chr2:119739083 5'GT 119739083 Upstream 1bp
chr7 75614201 75614201 1 + G T SARC 75614198 + 75614178 75614218 41 CCGCGTACCAACGTGCTGTACGAGCTGGCGCAGTACGCCTC CCGCGTACCAACGTGCTGTACGATCTGGCGCAGTACGCCTC < 41bp 0.728042478261948 0.325605710567487 0.22977415 0.021491677 prediction 0.456084956523896 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75614198 chr7:75614201 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_76327 0 0 1 0 1 POR chr7:75614276 5'GT 75614276 Upstream 76bp
chr5 1232393 1232393 1 + G A UCEC 1232390 + 1232370 1232410 41 TCGAGGGGATCCCCATTTTCCACGTCGAGCTCGCCATCGGC TCGAGGGGATCCCCATTTTCCACATCGAGCTCGCCATCGGC < 41bp 0.785117847571396 0.55707601245562 0.1535039 0.010736823 prediction 0.456083670231553 Functional Loss - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1232390 chr5:1232393 nonsynonymous SNV 0.048 0 24 hm5C_associated_SNPs_76328 0 0 0 0 2 SLC6A18 chr5:1232334 3'AG 1232334 Downstream 60bp
chr5 1232393 1232393 1 + G A UCEC 1232390 + 1232370 1232410 41 TCGAGGGGATCCCCATTTTCCACGTCGAGCTCGCCATCGGC TCGAGGGGATCCCCATTTTCCACATCGAGCTCGCCATCGGC < 41bp 0.785117847571396 0.55707601245562 0.1535039 0.010736823 prediction 0.456083670231553 Functional Loss - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1232390 chr5:1232393 nonsynonymous SNV 0.048 0 24 hm5C_associated_SNPs_76328 0 0 0 0 2 SLC6A18 chr5:1232474 5'GT 1232474 Upstream 82bp
chr5 916028 916028 1 + G A SKCM 916025 + 916005 916045 41 TTTTCTTTACACAGGAAGAGCGAGGGCCTCAGCGGCCGGGT TTTTCTTTACACAGGAAGAGCGAAGGCCTCAGCGGCCGGGT < 41bp 0.799310182277619 0.571271376227616 0.89321357 0.48829907 prediction 0.456077612100006 Functional Loss - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:916025 chr5:916028 synonymous SNV . 0 24 hm5C_associated_SNPs_76329 0 0 1 0 2 TRIP13 chr5:916019 3'AG 916019 Downstream 10bp
chr5 916028 916028 1 + G A SKCM 916025 + 916005 916045 41 TTTTCTTTACACAGGAAGAGCGAGGGCCTCAGCGGCCGGGT TTTTCTTTACACAGGAAGAGCGAAGGCCTCAGCGGCCGGGT < 41bp 0.799310182277619 0.571271376227616 0.89321357 0.48829907 prediction 0.456077612100006 Functional Loss - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:916025 chr5:916028 synonymous SNV . 0 24 hm5C_associated_SNPs_76329 0 0 1 0 2 TRIP13 chr5:916088 5'GT 916088 Upstream 61bp
chr20 17207991 17207991 1 + G T GBM 17207989 + 17207969 17208009 41 TCCCAGTGGAAGGCGGCCGCCGGGTTCCTCTTCTGTGTCAT TCCCAGTGGAAGGCGGCCGCCGTGTTCCTCTTCTGTGTCAT < 41bp 0.728038649985452 0.370980723560778 0.87201655 0.27341753 prediction 0.456077299970904 Functional Loss - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17207989 chr20:17207991 nonsynonymous SNV 0.654 0 23 hm5C_associated_SNPs_76330 0 0 0 0 1 PCSK2 chr20:17207975 3'AG 17207975 Downstream 17bp
chr20 17207992 17207992 1 + G A UCEC 17207989 + 17207969 17208009 41 TCCCAGTGGAAGGCGGCCGCCGGGTTCCTCTTCTGTGTCAT TCCCAGTGGAAGGCGGCCGCCGGATTCCTCTTCTGTGTCAT < 41bp 0.728038649985452 0.486543184573694 0.87201655 0.83871514 prediction 0.456077299970904 Functional Loss - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17207989 chr20:17207992 synonymous SNV . 0 24 hm5C_associated_SNPs_76331 0 0 0 0 1 PCSK2 chr20:17207975 3'AG 17207975 Downstream 18bp
chr7 100466151 100466151 1 + C T GBM 100466149 + 100466129 100466169 41 CCGCCACCTCCTGCCTACCGCACGGGCTCCCTGAAGCCAAA CCGCCACCTCCTGCCTACCGCATGGGCTCCCTGAAGCCAAA < 41bp 0.763426619961919 0.53538977195999 0.31142712 0.24226892 prediction 0.456073696003857 Functional Loss - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100466149 chr7:100466151 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_76333 0 0 0 0 1 TRIP6 chr7:100466117 3'AG 100466117 Downstream 35bp
chr1 171755056 171755056 1 + G A SKCM 171755053 + 171755033 171755073 41 GAGACCGAGTGGCTCTTTGGCATGGATGAGGGCCGGAAACA GAGACCGAGTGGCTCTTTGGCATAGATGAGGGCCGGAAACA < 41bp 0.7280341769918 0.486539008200578 0.64322865 0.5451024 prediction 0.456068353983599 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171755053 chr1:171755056 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_76334 0 0 1 0 2 METTL13 chr1:171755019 3'AG 171755019 Downstream 38bp
chr1 171755056 171755056 1 + G A SKCM 171755053 + 171755033 171755073 41 GAGACCGAGTGGCTCTTTGGCATGGATGAGGGCCGGAAACA GAGACCGAGTGGCTCTTTGGCATAGATGAGGGCCGGAAACA < 41bp 0.7280341769918 0.486539008200578 0.64322865 0.5451024 prediction 0.456068353983599 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171755053 chr1:171755056 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_76334 0 0 1 0 2 METTL13 chr1:171755027 3'AG 171755027 Downstream 30bp
chr19 36124154 36124154 1 + G T BLCA 36124152 + 36124132 36124172 41 TGGCTGCACTGAGGCCCCCTCTGGTGAGTGTGAACAGGGAA TGGCTGCACTGAGGCCCCCTCTTGTGAGTGTGAACAGGGAA < 41bp 0.728031102501583 0.380571254914734 0.18924648 0.062154323 prediction 0.456062205003166 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124152 chr19:36124154 synonymous SNV . 0 23 hm5C_associated_SNPs_76335 0 0 1 0 1 RBM42 chr19:36124154 5'GT 36124154 Upstream 1bp
chr16 31382471 31382471 1 + G T LUAD 31382468 + 31382448 31382488 41 GGCAGGCACTGAGCGGGGGTCAAGACCTCACCCAGGATGGA GGCAGGCACTGAGCGGGGGTCAATACCTCACCCAGGATGGA < 41bp 0.728028574627457 0.323616311909459 0.33142543 0.26013666 prediction 0.456057149254914 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31382468 chr16:31382471 nonsynonymous SNV 0.987 4 24 hm5C_associated_SNPs_76336 0 0 0 0 2 ITGAX chr16:31382405 3'AG 31382405 Downstream 67bp
chr16 31382471 31382471 1 + G T LUAD 31382468 + 31382448 31382488 41 GGCAGGCACTGAGCGGGGGTCAAGACCTCACCCAGGATGGA GGCAGGCACTGAGCGGGGGTCAATACCTCACCCAGGATGGA < 41bp 0.728028574627457 0.323616311909459 0.33142543 0.26013666 prediction 0.456057149254914 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31382468 chr16:31382471 nonsynonymous SNV 0.987 4 24 hm5C_associated_SNPs_76336 0 0 0 0 2 ITGAX chr16:31382535 5'GT 31382535 Upstream 65bp
chr9 133498142 133498142 1 + G A SKCM 133498139 + 133498119 133498159 41 GGGATTGTAATAGGAAGAAACGGGGAAATGATCAAAAAGAT GGGATTGTAATAGGAAGAAACGGAGAAATGATCAAAAAGAT < 41bp 0.748233519523228 0.520209227719207 0.88948286 0.84496665 prediction 0.456048583608041 Functional Loss - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133498139 chr9:133498142 synonymous SNV . 0 24 hm5C_associated_SNPs_76337 0 0 1 0 2 FUBP3 chr9:133498095 3'AG 133498095 Downstream 48bp
chr9 133498142 133498142 1 + G A SKCM 133498139 + 133498119 133498159 41 GGGATTGTAATAGGAAGAAACGGGGAAATGATCAAAAAGAT GGGATTGTAATAGGAAGAAACGGAGAAATGATCAAAAAGAT < 41bp 0.748233519523228 0.520209227719207 0.88948286 0.84496665 prediction 0.456048583608041 Functional Loss - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133498139 chr9:133498142 synonymous SNV . 0 24 hm5C_associated_SNPs_76337 0 0 1 0 2 FUBP3 chr9:133498197 5'GT 133498197 Upstream 56bp
chrX 89177107 89177107 1 + C T ESCA 89177105 + 89177085 89177125 41 ATGGAGGCCGCTGCGGACGGCCCGGCTGAGACCCAAAGCCC ATGGAGGCCGCTGCGGACGGCCTGGCTGAGACCCAAAGCCC < 41bp 0.728020466318561 0.493317307620095 0.15909708 0.16901657 prediction 0.456040932637121 Functional Loss - TGIF2LX ENSG00000153779 CDS Human protein_coding chrX:89177105 chrX:89177107 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_76339 0 0 0 0 1 TGIF2LX chrX:89177064 3'AG 89177064 Downstream 44bp
chrX 89177108 89177108 1 + G T LUAD 89177105 + 89177085 89177125 41 ATGGAGGCCGCTGCGGACGGCCCGGCTGAGACCCAAAGCCC ATGGAGGCCGCTGCGGACGGCCCTGCTGAGACCCAAAGCCC < 41bp 0.728020466318561 0.332959371278652 0.15909708 0.16252947 prediction 0.456040932637121 Functional Loss - TGIF2LX ENSG00000153779 CDS Human protein_coding chrX:89177105 chrX:89177108 synonymous SNV . 0 24 hm5C_associated_SNPs_76340 0 0 0 0 1 TGIF2LX chrX:89177064 3'AG 89177064 Downstream 45bp
chr17 38318122 38318122 1 + C T LUAD 38318119 + 38318099 38318139 41 AAGGGAGAAGAAAAGCCTGACACCAAAAGCACTGTGACTGG AAGGGAGAAGAAAAGCCTGACACTAAAAGCACTGTGACTGG < 41bp 0.731641636642669 0.503621930959515 0.05666536 0.08464503 prediction 0.456039411366309 Functional Loss - CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318119 chr17:38318122 synonymous SNV . 0 24 hm5C_associated_SNPs_76341 0 0 1 0 1 CASC3 chr17:38318164 5'GT 38318164 Upstream 43bp
chr5 38407193 38407193 1 + G T LUSC 38407190 + 38407170 38407210 41 TTCTGTGTCAATGACTACACCTGGGGGGGCTCGCGATGCCA TTCTGTGTCAATGACTACACCTGTGGGGGCTCGCGATGCCA < 41bp 0.728018976226168 0.321543561568812 0.6494777 0.2268784 prediction 0.456037952452335 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38407190 chr5:38407193 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_76342 0 0 0 0 1 EGFLAM chr5:38407248 5'GT 38407248 Upstream 56bp
chr10 102242045 102242045 1 + G T UCS 102242042 + 102242022 102242062 41 CCCCAGGCGGTGAAGGGCACCATGAAACGCACGTGCAAGTG CCCCAGGCGGTGAAGGGCACCATTAAACGCACGTGCAAGTG < 41bp 0.728013383940204 0.333385206196943 0.14094105 0.18409318 prediction 0.456026767880408 Functional Loss - WNT8B ENSG00000075290 CDS Human protein_coding chr10:102242042 chr10:102242045 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_76343 0 0 0 0 1 WNT8B chr10:102242028 3'AG 102242028 Downstream 18bp
chr1 158152874 158152874 1 + G T LUSC 158152872 + 158152852 158152892 41 AGCAACCCTGGATGTGGTGGCTGGGGAGGCAGCTGGCCTGT AGCAACCCTGGATGTGGTGGCTTGGGAGGCAGCTGGCCTGT < 41bp 0.909079172907355 0.681070205748263 0.89205515 0.57280314 prediction 0.456017934318185 Functional Loss - CD1D ENSG00000158473 CDS Human protein_coding chr1:158152872 chr1:158152874 nonsynonymous SNV 0.003 3 23 hm5C_associated_SNPs_76345 0 0 0 0 1 CD1D chr1:158152946 5'GT 158152946 Upstream 73bp
chr20 34205081 34205081 1 + T C rs139397725 34205080 + 34205060 34205100 41 CCGACTGGGTCTCCAGTAGTCTCTGAGGAGCCGCTCGACCT CCGACTGGGTCTCCAGTAGTCCCTGAGGAGCCGCTCGACCT < 41bp 0.728007826903195 0.476062403867114 0.18454948 0.057777435 prediction 0.456015653806389 Functional Loss - SPAG4 ENSG00000061656 CDS Human protein_coding chr20:34205080 chr20:34205081 nonsynonymous SNV 0.625 0 22 hm5C_associated_SNPs_76346 0 0 0 0 2 SPAG4 chr20:34205058 3'AG 34205058 Downstream 24bp
chr20 34205081 34205081 1 + T C rs139397725 34205080 + 34205060 34205100 41 CCGACTGGGTCTCCAGTAGTCTCTGAGGAGCCGCTCGACCT CCGACTGGGTCTCCAGTAGTCCCTGAGGAGCCGCTCGACCT < 41bp 0.728007826903195 0.476062403867114 0.18454948 0.057777435 prediction 0.456015653806389 Functional Loss - SPAG4 ENSG00000061656 CDS Human protein_coding chr20:34205080 chr20:34205081 nonsynonymous SNV 0.625 0 22 hm5C_associated_SNPs_76346 0 0 0 0 2 SPAG4 chr20:34205162 5'GT 34205162 Upstream 82bp
chr1 41285881 41285881 1 + C T GBM 41285879 + 41285859 41285899 41 CCCTGAAGGTCCAGGAGCAGCACCGGCAGAAGCACTTCGAG CCCTGAAGGTCCAGGAGCAGCATCGGCAGAAGCACTTCGAG < 41bp 0.728005881277542 0.466090348199746 0.419186 0.43775037 prediction 0.456011762555083 Functional Loss - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41285879 chr1:41285881 synonymous SNV . 0 23 hm5C_associated_SNPs_76347 0 0 1 0 2 KCNQ4 chr1:41285837 3'AG 41285837 Downstream 45bp
chr1 41285881 41285881 1 + C T GBM 41285879 + 41285859 41285899 41 CCCTGAAGGTCCAGGAGCAGCACCGGCAGAAGCACTTCGAG CCCTGAAGGTCCAGGAGCAGCATCGGCAGAAGCACTTCGAG < 41bp 0.728005881277542 0.466090348199746 0.419186 0.43775037 prediction 0.456011762555083 Functional Loss - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41285879 chr1:41285881 synonymous SNV . 0 23 hm5C_associated_SNPs_76347 0 0 1 0 2 KCNQ4 chr1:41285932 5'GT 41285932 Upstream 52bp
chr19 11998756 11998756 1 + C T rs3810315 11998754 + 11998734 11998774 41 ACGCTATGCCCTGCTGTAGTCACAGGAGGTGTAGAGAGGAC ACGCTATGCCCTGCTGTAGTCATAGGAGGTGTAGAGAGGAC < 41bp 0.773433594152591 0.54542934590295 0.89517766 0.9004129 prediction 0.456008496499281 Functional Loss - ZNF69 ENSG00000198429 CDS Human protein_coding chr19:11998754 chr19:11998756 synonymous SNV . 0 23 hm5C_associated_SNPs_76348 0 0 1 0 1 ZNF69 chr19:11998801 5'GT 11998801 Upstream 46bp
chr4 48385778 48385778 1 + G A COAD 48385775 + 48385755 48385795 41 AGTGCCAAACGGAGGAATACCTCGTATGCAACCTCAGGCTT AGTGCCAAACGGAGGAATACCTCATATGCAACCTCAGGCTT < 41bp 0.748722720063198 0.5207189559796 0.12707561 0.09411758 prediction 0.456007528167196 Functional Loss - SLAIN2 ENSG00000109171 CDS Human protein_coding chr4:48385775 chr4:48385778 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_76349 0 0 1 0 1 SLAIN2 chr4:48385801 5'GT 48385801 Upstream 24bp
chr2 95952596 95952596 1 + G A LUSC 95952593 + 95952573 95952613 41 AGGGCCCTGGAGTCCTCTGCCCCGAATCTCCAGGTGGCTGC AGGGCCCTGGAGTCCTCTGCCCCAAATCTCCAGGTGGCTGC < 41bp 0.728002624937538 0.482378836858982 0.18528882 0.16219372 prediction 0.456005249875076 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95952593 chr2:95952596 synonymous SNV . 0 24 hm5C_associated_SNPs_76351 0 0 0 0 2 PROM2 chr2:95952552 3'AG 95952552 Downstream 45bp
chr2 95952596 95952596 1 + G A LUSC 95952593 + 95952573 95952613 41 AGGGCCCTGGAGTCCTCTGCCCCGAATCTCCAGGTGGCTGC AGGGCCCTGGAGTCCTCTGCCCCAAATCTCCAGGTGGCTGC < 41bp 0.728002624937538 0.482378836858982 0.18528882 0.16219372 prediction 0.456005249875076 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95952593 chr2:95952596 synonymous SNV . 0 24 hm5C_associated_SNPs_76351 0 0 0 0 2 PROM2 chr2:95952605 5'GT 95952605 Upstream 10bp
chr19 10823451 10823451 1 + G T LAML 10823449 + 10823429 10823469 41 CACAGCGCTTTGGCTCTGCCCTGGTGCCCACTGGGAACCTG CACAGCGCTTTGGCTCTGCCCTTGTGCCCACTGGGAACCTG < 41bp 0.727999495311761 0.371950074523576 0.23069566 0.12845433 prediction 0.455998990623521 Functional Loss - QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10823449 chr19:10823451 synonymous SNV . 0 23 hm5C_associated_SNPs_76352 0 0 1 0 2 QTRT1 chr19:10823434 3'AG 10823434 Downstream 18bp
chr19 10823451 10823451 1 + G T LAML 10823449 + 10823429 10823469 41 CACAGCGCTTTGGCTCTGCCCTGGTGCCCACTGGGAACCTG CACAGCGCTTTGGCTCTGCCCTTGTGCCCACTGGGAACCTG < 41bp 0.727999495311761 0.371950074523576 0.23069566 0.12845433 prediction 0.455998990623521 Functional Loss - QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10823449 chr19:10823451 synonymous SNV . 0 23 hm5C_associated_SNPs_76352 0 0 1 0 2 QTRT1 chr19:10823543 5'GT 10823543 Upstream 93bp
chr22 21363655 21363655 1 - T G UCEC 21363659 - 21363639 21363679 41 TCTGGGTTCGTGTCTCTGCTCATGAAGCGGCTCTCGGTGGA TCTGGGTTCGTGTCTCTGCTCATGCAGCGGCTCTCGGTGGA < 41bp 0.727998521099595 0.350738780778336 0.40353748 0.31023166 prediction 0.455997042199191 Functional Loss - THAP7-AS1;TUBA3FP ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21363659 chr22:21363655 . . 0 25 hm5C_associated_SNPs_76353 0 0 1 0 2 THAP7-AS1;TUBA3FP chr22:21363738 3'AG 21363738 Downstream 84bp
chr22 21363655 21363655 1 - T G UCEC 21363659 - 21363639 21363679 41 TCTGGGTTCGTGTCTCTGCTCATGAAGCGGCTCTCGGTGGA TCTGGGTTCGTGTCTCTGCTCATGCAGCGGCTCTCGGTGGA < 41bp 0.727998521099595 0.350738780778336 0.40353748 0.31023166 prediction 0.455997042199191 Functional Loss - THAP7-AS1;TUBA3FP ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21363659 chr22:21363655 . . 0 25 hm5C_associated_SNPs_76353 0 0 1 0 2 THAP7-AS1;TUBA3FP chr22:21363742 3'AG 21363742 Downstream 88bp
chr11 1083784 1083784 1 + T C LIHC 1083783 + 1083763 1083803 41 CATGGACTGCAGCAACCTGACTGCACTGGCCACCTCGAAGC CATGGACTGCAGCAACCTGACCGCACTGGCCACCTCGAAGC < 41bp 0.739260442205971 0.511271816462257 0.19085404 0.14480805 prediction 0.455977251487428 Functional Loss - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1083783 chr11:1083784 synonymous SNV . 0 22 hm5C_associated_SNPs_76355 0 0 0 0 2 MUC2 chr11:1083741 3'AG 1083741 Downstream 44bp
chr11 1083784 1083784 1 + T C LIHC 1083783 + 1083763 1083803 41 CATGGACTGCAGCAACCTGACTGCACTGGCCACCTCGAAGC CATGGACTGCAGCAACCTGACCGCACTGGCCACCTCGAAGC < 41bp 0.739260442205971 0.511271816462257 0.19085404 0.14480805 prediction 0.455977251487428 Functional Loss - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1083783 chr11:1083784 synonymous SNV . 0 22 hm5C_associated_SNPs_76355 0 0 0 0 2 MUC2 chr11:1083841 5'GT 1083841 Upstream 58bp
chr5 78411716 78411716 1 + G A LUSC 78411713 + 78411693 78411733 41 CTGAAGCTGCTGTGGAGCACCCAGAAGCAGGTTGGTGCAGA CTGAAGCTGCTGTGGAGCACCCAAAAGCAGGTTGGTGCAGA < 41bp 0.75344656065006 0.525458868661643 0.13835886 0.043956578 prediction 0.455975383976835 Functional Loss - BHMT ENSG00000145692 CDS Human protein_coding chr5:78411713 chr5:78411716 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_76358 0 0 0 0 1 BHMT chr5:78411722 5'GT 78411722 Upstream 7bp
chr2 189850473 189850473 1 + G A PAAD 189850470 + 189850450 189850490 41 CCCTGGTTCTCCTGGCCCCCCTGGAATCTGTGAATCATGCC CCCTGGTTCTCCTGGCCCCCCTGAAATCTGTGAATCATGCC < 41bp 0.755955687311076 0.52797153105896 0.35299236 0.35649785 prediction 0.455968312504233 Functional Loss - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189850470 chr2:189850473 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_76360 0 0 0 0 2 COL3A1 chr2:189850391 3'AG 189850391 Downstream 83bp
chr2 189850473 189850473 1 + G A PAAD 189850470 + 189850450 189850490 41 CCCTGGTTCTCCTGGCCCCCCTGGAATCTGTGAATCATGCC CCCTGGTTCTCCTGGCCCCCCTGAAATCTGTGAATCATGCC < 41bp 0.755955687311076 0.52797153105896 0.35299236 0.35649785 prediction 0.455968312504233 Functional Loss - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189850470 chr2:189850473 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_76360 0 0 0 0 2 COL3A1 chr2:189850504 5'GT 189850504 Upstream 32bp
chr20 44642168 44642168 1 + G T UCEC 44642165 + 44642145 44642185 41 GGGAACCAGCTGTATTTGTTCAAGGATGGGTGAGGAGGCGG GGGAACCAGCTGTATTTGTTCAATGATGGGTGAGGAGGCGG < 41bp 0.749715351697814 0.521731633852357 0.71030694 0.3007798 prediction 0.455967435690914 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44642165 chr20:44642168 nonsynonymous SNV 0.979 4 24 hm5C_associated_SNPs_76361 0 0 0 0 1 MMP9 chr20:44642173 5'GT 44642173 Upstream 6bp
chr20 30419531 30419531 1 + G A LUSC 30419528 + 30419508 30419548 41 TGAGCGGCCTCTCCCCCTTCCTGGGAGATGATGACACAGAG TGAGCGGCCTCTCCCCCTTCCTGAGAGATGATGACACAGAG < 41bp 0.773718367308281 0.545741281903872 0.32815063 0.17116305 prediction 0.455954170808819 Functional Loss - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30419528 chr20:30419531 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_76365 0 0 0 0 1 MYLK2 chr20:30419506 3'AG 30419506 Downstream 26bp
chr3 183951143 183951143 1 + G A rs544147700 183951140 + 183951120 183951160 41 GCTCACCCCGCTGGCCCCGCCAGGCCCGCCGGGGCCCCCCA GCTCACCCCGCTGGCCCCGCCAGACCCGCCGGGGCCCCCCA < 41bp 0.782483944249931 0.554508070346507 0.8766798 0.87392133 prediction 0.455951747806849 Functional Loss - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183951140 chr3:183951143 nonsynonymous SNV 0.222 0 24 hm5C_associated_SNPs_76368 0 0 0 0 2 VWA5B2 chr3:183951185 5'GT 183951185 Upstream 43bp
chr3 183951143 183951143 1 + G A rs544147700 183951140 + 183951120 183951160 41 GCTCACCCCGCTGGCCCCGCCAGGCCCGCCGGGGCCCCCCA GCTCACCCCGCTGGCCCCGCCAGACCCGCCGGGGCCCCCCA < 41bp 0.782483944249931 0.554508070346507 0.8766798 0.87392133 prediction 0.455951747806849 Functional Loss - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183951140 chr3:183951143 nonsynonymous SNV 0.222 0 24 hm5C_associated_SNPs_76368 0 0 0 0 2 VWA5B2 chr3:183951242 5'GT 183951242 Upstream 100bp
chr11 59562908 59562908 1 + C T COAD 59562906 + 59562886 59562926 41 AGTGGACCACGTGGAGAAGGCACGAGATGAAACGAAAAAAG AGTGGACCACGTGGAGAAGGCATGAGATGAAACGAAAAAAG < 41bp 0.843759941132127 0.615785863943484 0.11733273 0.14332426 prediction 0.455948154377286 Functional Loss - STX3 ENSG00000166900 CDS Human protein_coding chr11:59562906 chr11:59562908 stopgain 0.990 0 23 hm5C_associated_SNPs_76370 0 0 0 0 1 STX3 chr11:59562955 5'GT 59562955 Upstream 48bp
chr7 99909507 99909507 1 + C T PRAD 99909505 + 99909485 99909525 41 GGAGACCTGGGTGGCAGAGACGCTGTGTGGCCTCAAGATGA GGAGACCTGGGTGGCAGAGACGTTGTGTGGCCTCAAGATGA < 41bp 0.81895124072117 0.590981148700127 0.21236864 0.33244637 prediction 0.455940184042085 Functional Loss - SPDYE3 ENSG00000214300 CDS Human protein_coding chr7:99909505 chr7:99909507 synonymous SNV . 0 23 hm5C_associated_SNPs_76373 0 0 0 0 1 SPDYE3 chr7:99909591 5'GT 99909591 Upstream 85bp
chr19 45451745 45451745 1 + C T BLCA 45451743 + 45451723 45451763 41 GTCTCTGGACACTATGGGCACACGACTCCTCCCAGCTCTGT GTCTCTGGACACTATGGGCACATGACTCCTCCCAGCTCTGT < 41bp 0.80327013295852 0.575302822090451 0.03346762 0.07593316 prediction 0.455934621736138 Functional Loss - APOC2 ENSG00000224916;ENSG00000234906 CDS Human protein_coding chr19:45451743 chr19:45451745 stopgain 0.158 0 23 hm5C_associated_SNPs_76376 0 0 1 0 2 APOC4-APOC2 chr19:45451723 3'AG 45451723 Downstream 23bp
chr19 45451745 45451745 1 + C T BLCA 45451743 + 45451723 45451763 41 GTCTCTGGACACTATGGGCACACGACTCCTCCCAGCTCTGT GTCTCTGGACACTATGGGCACATGACTCCTCCCAGCTCTGT < 41bp 0.80327013295852 0.575302822090451 0.03346762 0.07593316 prediction 0.455934621736138 Functional Loss - APOC2 ENSG00000224916;ENSG00000234906 CDS Human other chr19:45451743 chr19:45451745 stopgain 0.158 0 23 hm5C_associated_SNPs_76376 0 0 1 0 2 APOC2 chr19:45451790 5'GT 45451790 Upstream 46bp
chr11 12901363 12901363 1 + C T UCEC 12901361 + 12901341 12901381 41 GCTGGGGCTGCCTGGGATTCCACGCCCGACCTTCCCAGGGG GCTGGGGCTGCCTGGGATTCCATGCCCGACCTTCCCAGGGG < 41bp 0.817322854658814 0.589355900503982 0.29651025 0.32793054 prediction 0.455933908309664 Functional Loss - TEAD1 ENSG00000187079 CDS Human protein_coding chr11:12901361 chr11:12901363 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_76377 0 0 1 0 1 TEAD1 chr11:12901389 5'GT 12901389 Upstream 27bp
chr9 101818680 101818680 1 + G A ESCA 101818677 + 101818657 101818697 41 CACCAGGACCTCCAGCTATCCTGGGAGCAGGTTAGTGCCGT CACCAGGACCTCCAGCTATCCTGAGAGCAGGTTAGTGCCGT < 41bp 0.727964976239571 0.497435277084107 0.9048653 0.8734051 prediction 0.455929952479142 Functional Loss - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101818677 chr9:101818680 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_76378 0 0 0 0 1 COL15A1 chr9:101818686 5'GT 101818686 Upstream 7bp
chr19 45182170 45182170 1 + G A rs140104524 45182167 + 45182147 45182187 41 GGATCTCTGTCCATCTTGTGCTCGGCTGTATCCCCAGTGCC GGATCTCTGTCCATCTTGTGCTCAGCTGTATCCCCAGTGCC < 41bp 0.727963996767396 0.464671484308234 0.08376241 0.07406667 prediction 0.455927993534792 Functional Loss - CEACAM19 ENSG00000186567 CDS Human protein_coding chr19:45182167 chr19:45182170 synonymous SNV . 0 24 hm5C_associated_SNPs_76379 0 0 0 0 2 CEACAM19 chr19:45182125 3'AG 45182125 Downstream 46bp
chr19 45182170 45182170 1 + G A rs140104524 45182167 + 45182147 45182187 41 GGATCTCTGTCCATCTTGTGCTCGGCTGTATCCCCAGTGCC GGATCTCTGTCCATCTTGTGCTCAGCTGTATCCCCAGTGCC < 41bp 0.727963996767396 0.464671484308234 0.08376241 0.07406667 prediction 0.455927993534792 Functional Loss - CEACAM19 ENSG00000186567 CDS Human protein_coding chr19:45182167 chr19:45182170 synonymous SNV . 0 24 hm5C_associated_SNPs_76379 0 0 0 0 2 CEACAM19 chr19:45182208 5'GT 45182208 Upstream 39bp
chr9 33797845 33797845 1 + G T LIHC 33797843 + 33797823 33797863 41 TCAGCCGCATCCAGGTGAGACTGGGAGAGCACAACATCAAA TCAGCCGCATCCAGGTGAGACTTGGAGAGCACAACATCAAA < 41bp 0.727960858783541 0.373414662451109 0.48025444 0.4398547 prediction 0.455921717567081 Functional Loss - PRSS3 ENSG00000010438 CDS Human protein_coding chr9:33797843 chr9:33797845 synonymous SNV . 0 23 hm5C_associated_SNPs_76380 0 0 0 0 1 PRSS3 chr9:33797827 3'AG 33797827 Downstream 19bp
chr1 156702141 156702141 1 + G T BRCA 156702138 + 156702118 156702158 41 GGCGTGTGCCCTGGCCTTTACCCGGATGCCTGGCTTTCAGA GGCGTGTGCCCTGGCCTTTACCCTGATGCCTGGCTTTCAGA < 41bp 0.72796048362143 0.320518633446887 0.9192251 0.30954415 prediction 0.45592096724286 Functional Loss - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156702138 chr1:156702141 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_76381 0 0 1 0 1 RRNAD1 chr1:156702073 3'AG 156702073 Downstream 69bp
chr1 156702140 156702140 1 + C T LGG 156702138 + 156702118 156702158 41 GGCGTGTGCCCTGGCCTTTACCCGGATGCCTGGCTTTCAGA GGCGTGTGCCCTGGCCTTTACCTGGATGCCTGGCTTTCAGA < 41bp 0.72796048362143 0.451892295080522 0.9192251 0.37732977 prediction 0.45592096724286 Functional Loss - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156702138 chr1:156702140 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_76382 0 0 1 0 1 RRNAD1 chr1:156702073 3'AG 156702073 Downstream 68bp
chr17 4789811 4789811 1 + C T UCEC 4789809 + 4789789 4789829 41 ACTTACCTGAGCCGCCCACCCACGGAGCAGCTACTGAAGTT ACTTACCTGAGCCGCCCACCCATGGAGCAGCTACTGAAGTT < 41bp 0.727960341823892 0.488539865534776 0.3823194 0.39992347 prediction 0.455920683647785 Functional Loss - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4789809 chr17:4789811 nonsynonymous SNV 0.136 4 23 hm5C_associated_SNPs_76383 0 0 1 0 1 MINK1 chr17:4789746 3'AG 4789746 Downstream 66bp
chr1 117634502 117634502 1 + G T ESCA 117634500 + 117634480 117634520 41 GCAGCAGACTCACCGAGATCCAGCACCGTCCACATACTGTC GCAGCAGACTCACCGAGATCCATCACCGTCCACATACTGTC < 41bp 0.727938717605364 0.374483354210903 0.09897944 0.039803177 prediction 0.455877435210728 Functional Loss - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117634500 chr1:117634502 nonsynonymous SNV 0.869 3 23 hm5C_associated_SNPs_76389 0 0 0 0 2 TTF2 chr1:117634439 3'AG 117634439 Downstream 64bp
chr1 117634502 117634502 1 + G T ESCA 117634500 + 117634480 117634520 41 GCAGCAGACTCACCGAGATCCAGCACCGTCCACATACTGTC GCAGCAGACTCACCGAGATCCATCACCGTCCACATACTGTC < 41bp 0.727938717605364 0.374483354210903 0.09897944 0.039803177 prediction 0.455877435210728 Functional Loss - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117634500 chr1:117634502 nonsynonymous SNV 0.869 3 23 hm5C_associated_SNPs_76389 0 0 0 0 2 TTF2 chr1:117634572 5'GT 117634572 Upstream 71bp
chr1 205210708 205210708 1 + C T COAD 205210706 + 205210686 205210726 41 GTTCCACAGCCGCCGTCGGTCTCGGGAAAGGGAGCACCAGA GTTCCACAGCCGCCGTCGGTCTTGGGAAAGGGAGCACCAGA < 41bp 0.829157851708061 0.601221300110085 0.07310116 0.10816616 prediction 0.455873103195952 Functional Loss - TMCC2 ENSG00000133069 CDS Human protein_coding chr1:205210706 chr1:205210708 nonsynonymous SNV 0.983 2 23 hm5C_associated_SNPs_76390 0 0 1 0 1 TMCC2 chr1:205210633 3'AG 205210633 Downstream 76bp
chr7 148489858 148489858 1 + C T UCEC 148489856 + 148489836 148489876 41 GCTATCCTGCTTCAGTACAACACGGAAGATGCCTACACTGT GCTATCCTGCTTCAGTACAACATGGAAGATGCCTACACTGT < 41bp 0.727936109542409 0.451564938534281 0.20484644 0.19485077 prediction 0.455872219084817 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148489856 chr7:148489858 nonsynonymous SNV 0.991 1 23 hm5C_associated_SNPs_76391 0 0 1 0 2 CUL1 chr7:148489818 3'AG 148489818 Downstream 41bp
chr7 148489858 148489858 1 + C T UCEC 148489856 + 148489836 148489876 41 GCTATCCTGCTTCAGTACAACACGGAAGATGCCTACACTGT GCTATCCTGCTTCAGTACAACATGGAAGATGCCTACACTGT < 41bp 0.727936109542409 0.451564938534281 0.20484644 0.19485077 prediction 0.455872219084817 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148489856 chr7:148489858 nonsynonymous SNV 0.991 1 23 hm5C_associated_SNPs_76391 0 0 1 0 2 CUL1 chr7:148489910 5'GT 148489910 Upstream 53bp
chr16 68877550 68877550 1 + G T OV 68877547 + 68877527 68877567 41 GCCCGACAGGCCGTGGGCAGCGGGGCTCAGGAGACATGCGG GCCCGACAGGCCGTGGGCAGCGGTGCTCAGGAGACATGCGG < 41bp 0.925937723425638 0.69800883741857 0.90643877 0.8168508 prediction 0.455857772014135 Functional Loss - TANGO6 ENSG00000103047 CDS Human protein_coding chr16:68877547 chr16:68877550 synonymous SNV . 0 24 hm5C_associated_SNPs_76394 0 0 1 0 1 TANGO6 chr16:68877614 5'GT 68877614 Upstream 65bp
chr12 69145871 69145871 1 + G T LUAD 69145869 + 69145849 69145889 41 CAATGCAGCTGCTGTACTACCAGGCTCCGATGTCATCTGCC CAATGCAGCTGCTGTACTACCATGCTCCGATGTCATCTGCC < 41bp 0.72791909892473 0.372335553137792 0.71500194 0.107500106 prediction 0.45583819784946 Functional Loss - SLC35E3 ENSG00000175782 CDS Human protein_coding chr12:69145869 chr12:69145871 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_76399 0 0 1 0 2 SLC35E3 chr12:69145812 3'AG 69145812 Downstream 60bp
chr12 69145871 69145871 1 + G T LUAD 69145869 + 69145849 69145889 41 CAATGCAGCTGCTGTACTACCAGGCTCCGATGTCATCTGCC CAATGCAGCTGCTGTACTACCATGCTCCGATGTCATCTGCC < 41bp 0.72791909892473 0.372335553137792 0.71500194 0.107500106 prediction 0.45583819784946 Functional Loss - SLC35E3 ENSG00000175782 CDS Human protein_coding chr12:69145869 chr12:69145871 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_76399 0 0 1 0 2 SLC35E3 chr12:69145970 5'GT 69145970 Upstream 100bp
chr14 42368154 42368154 1 + G T LUAD 42368152 + 42368132 42368172 41 CTAATGTTGACCAGATTGTCCAGGAAACACAGGTGAGATTC CTAATGTTGACCAGATTGTCCATGAAACACAGGTGAGATTC < 41bp 0.72791834758131 0.41219650653135 0.68138385 0.13271049 prediction 0.455836695162621 Functional Loss - LRFN5 ENSG00000165379 CDS Human protein_coding chr14:42368152 chr14:42368154 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_76401 0 0 0 0 2 LRFN5 chr14:42368120 3'AG 42368120 Downstream 35bp
chr14 42368154 42368154 1 + G T LUAD 42368152 + 42368132 42368172 41 CTAATGTTGACCAGATTGTCCAGGAAACACAGGTGAGATTC CTAATGTTGACCAGATTGTCCATGAAACACAGGTGAGATTC < 41bp 0.72791834758131 0.41219650653135 0.68138385 0.13271049 prediction 0.455836695162621 Functional Loss - LRFN5 ENSG00000165379 CDS Human protein_coding chr14:42368152 chr14:42368154 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_76401 0 0 0 0 2 LRFN5 chr14:42368163 5'GT 42368163 Upstream 10bp
chr17 61769160 61769160 1 + G A STAD 61769157 + 61769137 61769177 41 GAGCGTGACCCGAAAGTACACGCGGCAGATCCTGGAGGGCA GAGCGTGACCCGAAAGTACACGCAGCAGATCCTGGAGGGCA < 41bp 0.74297833391695 0.515060923560665 0.2216559 0.17326787 prediction 0.455834820712569 Functional Loss - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61769157 chr17:61769160 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_76402 0 0 1 0 1 MAP3K3 chr17:61769093 3'AG 61769093 Downstream 68bp
chr1 159785238 159785238 1 + G C OV 159785234 + 159785214 159785254 41 ACAGCCAGGTCTGCTGAGTTCACCGTGGGGAGAAAGGTGAG ACAGCCAGGTCTGCTGAGTTCACCCTGGGGAGAAAGGTGAG < 41bp 0.727917382669873 0.431228659829787 0.41746834 0.1824758 prediction 0.455834765339747 Functional Loss - FCRL6 ENSG00000181036 CDS Human protein_coding chr1:159785234 chr1:159785238 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_76403 0 0 0 0 2 FCRL6 chr1:159785218 3'AG 159785218 Downstream 21bp
chr1 159785238 159785238 1 + G C OV 159785234 + 159785214 159785254 41 ACAGCCAGGTCTGCTGAGTTCACCGTGGGGAGAAAGGTGAG ACAGCCAGGTCTGCTGAGTTCACCCTGGGGAGAAAGGTGAG < 41bp 0.727917382669873 0.431228659829787 0.41746834 0.1824758 prediction 0.455834765339747 Functional Loss - FCRL6 ENSG00000181036 CDS Human protein_coding chr1:159785234 chr1:159785238 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_76403 0 0 0 0 2 FCRL6 chr1:159785249 5'GT 159785249 Upstream 12bp
chr2 201760010 201760010 1 + G A BLCA 201760007 + 201759987 201760027 41 GACTGGTAATGAGGAACAAACACGGATTAATCTGAATTGTA GACTGGTAATGAGGAACAAACACAGATTAATCTGAATTGTA < 41bp 0.741891136001725 0.513977195721097 0.31492174 0.10535446 prediction 0.455827880561256 Functional Loss - NIF3L1 ENSG00000196290 CDS Human protein_coding chr2:201760007 chr2:201760010 nonsynonymous SNV 0.989 1 24 hm5C_associated_SNPs_76406 0 0 1 0 1 NIF3L1 chr2:201759987 3'AG 201759987 Downstream 24bp
chr12 52451147 52451147 1 + G A UCEC 52451144 + 52451124 52451164 41 TCTGCCTGCCAGGTCTAAGCCAGGCGAGGGCAAGCTCATCT TCTGCCTGCCAGGTCTAAGCCAGACGAGGGCAAGCTCATCT < 41bp 0.72791387568374 0.48775249336779 0.7294399 0.47421643 prediction 0.455827751367481 Functional Loss - NR4A1 ENSG00000123358 CDS Human protein_coding chr12:52451144 chr12:52451147 nonsynonymous SNV 0.379 1 24 hm5C_associated_SNPs_76407 0 0 1 0 1 NR4A1 chr12:52451136 3'AG 52451136 Downstream 12bp
chr15 89820092 89820092 1 + C T rs376956791 89820090 + 89820070 89820110 41 CAAACCAGCATGCATGTAAGCTCGGAGCTAATATCCTGTTG CAAACCAGCATGCATGTAAGCTTGGAGCTAATATCCTGTTG < 41bp 0.727913693601497 0.445313613910088 0.12306556 0.15915611 prediction 0.455827387202995 Functional Loss - FANCI ENSG00000140525 CDS Human protein_coding chr15:89820090 chr15:89820092 synonymous SNV . 0 23 hm5C_associated_SNPs_76408 0 0 1 0 1 FANCI chr15:89820122 5'GT 89820122 Upstream 31bp
chr15 89820093 89820093 1 + G A UCEC 89820090 + 89820070 89820110 41 CAAACCAGCATGCATGTAAGCTCGGAGCTAATATCCTGTTG CAAACCAGCATGCATGTAAGCTCAGAGCTAATATCCTGTTG < 41bp 0.727913693601497 0.498279562909801 0.12306556 0.11692512 prediction 0.455827387202995 Functional Loss - FANCI ENSG00000140525 CDS Human protein_coding chr15:89820090 chr15:89820093 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_76409 1 0 1 0 1 FANCI chr15:89820122 5'GT 89820122 Upstream 30bp
chr12 112915738 112915738 1 + G A STAD 112915735 + 112915715 112915755 41 ACACAAGGCTGCCTGCAAAACACGGTGAATGACTTTTGGCG ACACAAGGCTGCCTGCAAAACACAGTGAATGACTTTTGGCG < 41bp 0.752594584439261 0.524693697332669 0.2822591 0.14308453 prediction 0.455801774213183 Functional Loss - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915735 chr12:112915738 synonymous SNV . 0 24 hm5C_associated_SNPs_76415 1 0 1 0 2 PTPN11 chr12:112915661 3'AG 112915661 Downstream 78bp
chr12 112915738 112915738 1 + G A STAD 112915735 + 112915715 112915755 41 ACACAAGGCTGCCTGCAAAACACGGTGAATGACTTTTGGCG ACACAAGGCTGCCTGCAAAACACAGTGAATGACTTTTGGCG < 41bp 0.752594584439261 0.524693697332669 0.2822591 0.14308453 prediction 0.455801774213183 Functional Loss - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915735 chr12:112915738 synonymous SNV . 0 24 hm5C_associated_SNPs_76415 1 0 1 0 2 PTPN11 chr12:112915819 5'GT 112915819 Upstream 82bp
chr1 147084776 147084776 1 + G A GBM 147084773 + 147084753 147084793 41 TGGATTCCAAATTCTCCAATCAGGGTAAACAGGGGGGCTCA TGGATTCCAAATTCTCCAATCAGAGTAAACAGGGGGGCTCA < 41bp 0.77492333222076 0.547023572036658 0.95440423 0.93080485 prediction 0.455799520368204 Functional Loss - BCL9 ENSG00000116128 CDS Human protein_coding chr1:147084773 chr1:147084776 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_76417 0 0 0 0 2 BCL9 chr1:147084682 3'AG 147084682 Downstream 95bp
chr1 147084776 147084776 1 + G A GBM 147084773 + 147084753 147084793 41 TGGATTCCAAATTCTCCAATCAGGGTAAACAGGGGGGCTCA TGGATTCCAAATTCTCCAATCAGAGTAAACAGGGGGGCTCA < 41bp 0.77492333222076 0.547023572036658 0.95440423 0.93080485 prediction 0.455799520368204 Functional Loss - BCL9 ENSG00000116128 CDS Human protein_coding chr1:147084773 chr1:147084776 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_76417 0 0 0 0 2 BCL9 chr1:147084776 3'AG 147084776 Downstream 1bp
chr16 31283290 31283290 1 + G A rs41499844 31283287 + 31283267 31283307 41 CAGCTGCTTGGGCGGACACACACGGCCACGGGCATCCGCAA CAGCTGCTTGGGCGGACACACACAGCCACGGGCATCCGCAA < 41bp 0.795295107254151 0.567397078377247 0.5485016 0.37641808 prediction 0.455796057753808 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31283287 chr16:31283290 synonymous SNV . 0 24 hm5C_associated_SNPs_76420 0 0 0 0 1 ITGAM chr16:31283313 5'GT 31283313 Upstream 24bp
chr4 106647833 106647833 1 + C T LIHC 106647830 + 106647810 106647850 41 GGAAGTGCCAGGAGTAAAAACAGCAGCTTCTAAGTGTGGGA GGAAGTGCCAGGAGTAAAAACAGTAGCTTCTAAGTGTGGGA < 41bp 0.738691012472253 0.510793297909333 0.42750233 0.29819915 prediction 0.45579542912584 Functional Loss - GSTCD ENSG00000138780 CDS Human protein_coding chr4:106647830 chr4:106647833 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_76421 0 0 0 0 1 GSTCD chr4:106647736 3'AG 106647736 Downstream 98bp
chr8 36763287 36763287 1 + T C COAD 36763286 + 36763266 36763306 41 GATAGCAGTGGGATGTTTCACTGGTGCAAACCAACCTCTTT GATAGCAGTGGGATGTTTCACCGGTGCAAACCAACCTCTTT < 41bp 0.732562578967031 0.504667722620875 0.8819586 0.8969761 prediction 0.455789712692312 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36763286 chr8:36763287 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_76422 0 0 0 1 2 KCNU1 chr8:36763226 3'AG 36763226 Downstream 62bp
chr8 36763287 36763287 1 + T C COAD 36763286 + 36763266 36763306 41 GATAGCAGTGGGATGTTTCACTGGTGCAAACCAACCTCTTT GATAGCAGTGGGATGTTTCACCGGTGCAAACCAACCTCTTT < 41bp 0.732562578967031 0.504667722620875 0.8819586 0.8969761 prediction 0.455789712692312 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36763286 chr8:36763287 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_76422 0 0 0 1 2 KCNU1 chr8:36763322 5'GT 36763322 Upstream 36bp
chr8 133844569 133844569 1 + C T UCEC 133844567 + 133844547 133844587 41 TTCTGGGAGTTCTCTGGCTTCACGAAGCATGTTTACGGAGA TTCTGGGAGTTCTCTGGCTTCATGAAGCATGTTTACGGAGA < 41bp 0.857169739367758 0.629280878215077 0.09780601 0.12269232 prediction 0.455777722305362 Functional Loss - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133844567 chr8:133844569 stopgain 0.892 0 23 hm5C_associated_SNPs_76424 0 0 1 0 2 PHF20L1 chr8:133844480 3'AG 133844480 Downstream 90bp
chr8 133844569 133844569 1 + C T UCEC 133844567 + 133844547 133844587 41 TTCTGGGAGTTCTCTGGCTTCACGAAGCATGTTTACGGAGA TTCTGGGAGTTCTCTGGCTTCATGAAGCATGTTTACGGAGA < 41bp 0.857169739367758 0.629280878215077 0.09780601 0.12269232 prediction 0.455777722305362 Functional Loss - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133844567 chr8:133844569 stopgain 0.892 0 23 hm5C_associated_SNPs_76424 0 0 1 0 2 PHF20L1 chr8:133844644 5'GT 133844644 Upstream 76bp
chr12 6952179 6952179 1 + C T HNSC 6952177 + 6952157 6952197 41 GGGACGAGTCCAGATGCGGACGCGGCGGACGTTAAGGGGAC GGGACGAGTCCAGATGCGGACGTGGCGGACGTTAAGGGGAC < 41bp 0.827785451577227 0.599898846397507 0.75078183 0.778268 prediction 0.455773210359439 Functional Loss - GNB3 ENSG00000111664 CDS Human protein_coding chr12:6952177 chr12:6952179 nonsynonymous SNV 0.933 4 23 hm5C_associated_SNPs_76425 0 0 1 0 2 GNB3 chr12:6952134 3'AG 6952134 Downstream 46bp
chr12 6952179 6952179 1 + C T HNSC 6952177 + 6952157 6952197 41 GGGACGAGTCCAGATGCGGACGCGGCGGACGTTAAGGGGAC GGGACGAGTCCAGATGCGGACGTGGCGGACGTTAAGGGGAC < 41bp 0.827785451577227 0.599898846397507 0.75078183 0.778268 prediction 0.455773210359439 Functional Loss - GNB3 ENSG00000111664 CDS Human protein_coding chr12:6952177 chr12:6952179 nonsynonymous SNV 0.933 4 23 hm5C_associated_SNPs_76425 0 0 1 0 2 GNB3 chr12:6952240 5'GT 6952240 Upstream 62bp
chr4 74319582 74319582 1 + G A SKCM 74319579 + 74319559 74319599 41 GCCTGTTGGAGAAATGCTGCCAAGGCCAGGAACAGGAAGTC GCCTGTTGGAGAAATGCTGCCAAAGCCAGGAACAGGAAGTC < 41bp 0.74914140785996 0.521254903667503 0.16938734 0.20958495 prediction 0.455773008384914 Functional Loss - AFP ENSG00000081051 CDS Human protein_coding chr4:74319579 chr4:74319582 nonsynonymous SNV 0.017 0 24 hm5C_associated_SNPs_76426 0 0 1 0 1 AFP chr4:74319614 5'GT 74319614 Upstream 33bp
chrX 48557334 48557334 1 + G A UCEC 48557331 + 48557311 48557351 41 AGTCTTCTTGGAATCAGCTGCAGGACCTGTGCCGCCTGGCC AGTCTTCTTGGAATCAGCTGCAGAACCTGTGCCGCCTGGCC < 41bp 0.727884238901144 0.481506533122623 0.8551014 0.61258775 prediction 0.455768477802288 Functional Loss - SUV39H1 ENSG00000101945 CDS Human protein_coding chrX:48557331 chrX:48557334 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_76427 0 0 1 0 1 SUV39H1 chrX:48557293 3'AG 48557293 Downstream 42bp
chr12 57921343 57921343 1 + G A UCEC 57921340 + 57921320 57921360 41 CCACCTACCTCCAGTGTCACCACGGCAACTACTGACCCGGG CCACCTACCTCCAGTGTCACCACAGCAACTACTGACCCGGG < 41bp 0.768811252454378 0.540929238408535 0.37551332 0.32023144 prediction 0.455764028091686 Functional Loss - MBD6 ENSG00000166987 CDS Human protein_coding chr12:57921340 chr12:57921343 synonymous SNV . 0 24 hm5C_associated_SNPs_76428 0 0 1 0 1 MBD6 chr12:57921290 3'AG 57921290 Downstream 54bp
chr12 16109906 16109906 1 + C T PRAD 16109904 + 16109884 16109924 41 TCCAAAATACAAGTGAATCACCCGGCAGTTCTGAGGCGTGC TCCAAAATACAAGTGAATCACCTGGCAGTTCTGAGGCGTGC < 41bp 0.727882001219971 0.455515278146078 0.32271665 0.30421638 prediction 0.455764002439942 Functional Loss - DERA ENSG00000023697 CDS Human protein_coding chr12:16109904 chr12:16109906 nonsynonymous SNV 0.567 1 23 hm5C_associated_SNPs_76429 0 0 1 0 2 DERA chr12:16109870 3'AG 16109870 Downstream 37bp
chr12 16109906 16109906 1 + C T PRAD 16109904 + 16109884 16109924 41 TCCAAAATACAAGTGAATCACCCGGCAGTTCTGAGGCGTGC TCCAAAATACAAGTGAATCACCTGGCAGTTCTGAGGCGTGC < 41bp 0.727882001219971 0.455515278146078 0.32271665 0.30421638 prediction 0.455764002439942 Functional Loss - DERA ENSG00000023697 CDS Human protein_coding chr12:16109904 chr12:16109906 nonsynonymous SNV 0.567 1 23 hm5C_associated_SNPs_76429 0 0 1 0 2 DERA chr12:16109967 5'GT 16109967 Upstream 62bp
chrX 47041209 47041209 1 + G T LUSC 47041206 + 47041186 47041226 41 GCTCCAGAGCCCTACCCATCCTAGTTCTGCTCTCCCACCGG GCTCCAGAGCCCTACCCATCCTATTTCTGCTCTCCCACCGG < 41bp 0.727881740434954 0.324583551147491 0.28277022 0.18724328 prediction 0.455763480869909 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47041206 chrX:47041209 nonsynonymous SNV 0.938 3 24 hm5C_associated_SNPs_76430 0 0 1 0 2 RBM10 chrX:47041148 3'AG 47041148 Downstream 62bp
chrX 47041209 47041209 1 + G T LUSC 47041206 + 47041186 47041226 41 GCTCCAGAGCCCTACCCATCCTAGTTCTGCTCTCCCACCGG GCTCCAGAGCCCTACCCATCCTATTTCTGCTCTCCCACCGG < 41bp 0.727881740434954 0.324583551147491 0.28277022 0.18724328 prediction 0.455763480869909 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47041206 chrX:47041209 nonsynonymous SNV 0.938 3 24 hm5C_associated_SNPs_76430 0 0 1 0 2 RBM10 chrX:47041265 5'GT 47041265 Upstream 57bp
chr12 9000181 9000181 1 + G T UCEC 9000179 + 9000159 9000199 41 CTCCCCCTCCCAGCAGCTTCCAGGAGCAGAAGTGGAGCTGC CTCCCCCTCCCAGCAGCTTCCATGAGCAGAAGTGGAGCTGC < 41bp 0.914440622727139 0.686560810659911 0.9143803 0.8243167 prediction 0.455759624134455 Functional Loss - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9000179 chr12:9000181 stopgain 0.997 1 23 hm5C_associated_SNPs_76431 0 0 0 0 1 A2ML1 chr12:9000145 3'AG 9000145 Downstream 37bp
chr14 90921641 90921641 1 + A C rs572405837 90921640 + 90921620 90921660 41 GACTCGTTTGAGCTCTTAGCCAGGCGTGTAGTCTGGCGGGA GACTCGTTTGAGCTCTTAGCCCGGCGTGTAGTCTGGCGGGA < 41bp 0.750845738488778 0.522973867025437 0.9283558 0.90984255 prediction 0.455743742926682 Functional Loss - LINC00642 ENSG00000233208 ncRNA_exonic Human lincRNA chr14:90921640 chr14:90921641 . . 0 22 hm5C_associated_SNPs_76434 0 0 0 0 1 LINC00642 chr14:90921722 5'GT 90921722 Upstream 82bp
chr7 128450358 128450358 1 + G A SARC 128450355 + 128450335 128450375 41 GTTTCAAAGAGTCTCATTTCCAGGAAGTGTTGGAGAATCCC GTTTCAAAGAGTCTCATTTCCAGAAAGTGTTGGAGAATCCC < 41bp 0.733379626123231 0.505514548046107 0.18996936 0.11695945 prediction 0.455730156154248 Functional Loss - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128450355 chr7:128450358 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_76436 0 0 1 0 1 CCDC136 chr7:128450420 5'GT 128450420 Upstream 63bp
chr20 20033204 20033204 1 + G A TGCT 20033201 + 20033181 20033221 41 GCGCGTCCTCCTTGCGGCAGCGCGTGGAGTGCGGCGTCCTG GCGCGTCCTCCTTGCGGCAGCGCATGGAGTGCGGCGTCCTG < 41bp 0.727863950925583 0.498218843361789 0.69688976 0.6824711 prediction 0.455727901851166 Functional Loss - CRNKL1 ENSG00000101343 CDS Human other chr20:20033201 chr20:20033204 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_76437 0 0 0 0 1 CRNKL1 chr20:20033235 5'GT 20033235 Upstream 32bp
chr3 14708374 14708374 1 + G C BRCA 14708373 + 14708353 14708393 41 ATATGAGAAAAGAACTTCAGCGCCAGCAATGGGAGGAAGAA ATATGAGAAAAGAACTTCAGCCCCAGCAATGGGAGGAAGAA < 41bp 0.727863391698669 0.418451815374488 0.09654969 0.025611341 prediction 0.455726783397337 Functional Loss - CCDC174 ENSG00000154781 CDS Human protein_coding chr3:14708373 chr3:14708374 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_76438 0 0 1 0 2 CCDC174 chr3:14708312 3'AG 14708312 Downstream 63bp
chr3 14708374 14708374 1 + G C BRCA 14708373 + 14708353 14708393 41 ATATGAGAAAAGAACTTCAGCGCCAGCAATGGGAGGAAGAA ATATGAGAAAAGAACTTCAGCCCCAGCAATGGGAGGAAGAA < 41bp 0.727863391698669 0.418451815374488 0.09654969 0.025611341 prediction 0.455726783397337 Functional Loss - CCDC174 ENSG00000154781 CDS Human protein_coding chr3:14708373 chr3:14708374 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_76438 0 0 1 0 2 CCDC174 chr3:14708454 5'GT 14708454 Upstream 81bp
chr22 30090765 30090765 1 + C T COAD 30090763 + 30090743 30090783 41 CACCTTGCAGAGCGCCAAGTCCCGAGTGGCCTTCTTTGAAG CACCTTGCAGAGCGCCAAGTCCTGAGTGGCCTTCTTTGAAG < 41bp 0.808494739650011 0.580634033091944 0.13143778 0.12027368 prediction 0.455721413116133 Functional Loss - NF2 ENSG00000186575 CDS Human protein_coding chr22:30090763 chr22:30090765 stopgain 0.998 0 23 hm5C_associated_SNPs_76440 0 0 1 0 1 NF2 chr22:30090741 3'AG 30090741 Downstream 25bp
chr12 69980090 69980090 1 + G T UCEC 69980087 + 69980067 69980107 41 ACCTGTTAACATCTTTAAGGCAGGAGCTGATGAAGAGAGAG ACCTGTTAACATCTTTAAGGCAGTAGCTGATGAAGAGAGAG < 41bp 0.727857370854487 0.412536160563395 0.15415385 0.110836774 prediction 0.455714741708974 Functional Loss - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69980087 chr12:69980090 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_76442 0 0 1 0 2 CCT2 chr12:69980050 3'AG 69980050 Downstream 41bp
chr12 69980090 69980090 1 + G T UCEC 69980087 + 69980067 69980107 41 ACCTGTTAACATCTTTAAGGCAGGAGCTGATGAAGAGAGAG ACCTGTTAACATCTTTAAGGCAGTAGCTGATGAAGAGAGAG < 41bp 0.727857370854487 0.412536160563395 0.15415385 0.110836774 prediction 0.455714741708974 Functional Loss - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69980087 chr12:69980090 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_76442 0 0 1 0 2 CCT2 chr12:69980124 5'GT 69980124 Upstream 35bp
chr3 183755826 183755826 1 + G A BRCA 183755823 + 183755803 183755843 41 CACCAGGTGGCCATCAGGCGCAGGTGCAGGCCCAGCCCCTA CACCAGGTGGCCATCAGGCGCAGATGCAGGCCCAGCCCCTA < 41bp 0.78071222914293 0.552858794763528 0.87647724 0.53334653 prediction 0.455706868758804 Functional Loss - HTR3D ENSG00000186090 CDS Human protein_coding chr3:183755823 chr3:183755826 synonymous SNV . 0 24 hm5C_associated_SNPs_76444 0 0 0 0 1 HTR3D chr3:183755809 3'AG 183755809 Downstream 18bp
chr21 46605006 46605006 1 + G A UCEC 46605003 + 46604983 46605023 41 GTCCTGCAGTGACAAGATTGCACGGTAAGGGGCGGGGGCTC GTCCTGCAGTGACAAGATTGCACAGTAAGGGGCGGGGGCTC < 41bp 0.746773819987012 0.518921948854764 0.53134084 0.3386593 prediction 0.455703742264496 Functional Loss - ADARB1 ENSG00000197381 CDS Human protein_coding chr21:46605003 chr21:46605006 nonsynonymous SNV 0.960 5 24 hm5C_associated_SNPs_76446 0 0 0 0 1 ADARB1 chr21:46605006 5'GT 46605006 Upstream 1bp
chr1 203743064 203743064 1 + C T UCEC 203743062 + 203743042 203743082 41 CACATCCATGCCACAGAGTACGCGGTGGGTATCTATGACAA CACATCCATGCCACAGAGTACGTGGTGGGTATCTATGACAA < 41bp 0.809631922534432 0.581784632504198 0.39579046 0.4725429 prediction 0.455694580060468 Functional Loss - LAX1 ENSG00000122188 CDS Human protein_coding chr1:203743062 chr1:203743064 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_76448 0 0 0 0 1 LAX1 chr1:203743003 3'AG 203743003 Downstream 62bp
chr9 139309052 139309052 1 + C T UCEC 139309050 + 139309030 139309070 41 GCTGATAGCAAAGGCTTGGACACGGTGGTTGCCTTACTGGC GCTGATAGCAAAGGCTTGGACATGGTGGTTGCCTTACTGGC < 41bp 0.800286554942146 0.572440058613559 0.4640755 0.4444214 prediction 0.455692992657173 Functional Loss - PMPCA ENSG00000165688 CDS Human protein_coding chr9:139309050 chr9:139309052 nonsynonymous SNV 0.958 3 23 hm5C_associated_SNPs_76449 0 0 1 0 3 PMPCA;PMPCA chr9:139309005 3'AG 139309005 Downstream 48bp
chr9 139309052 139309052 1 + C T UCEC 139309050 + 139309030 139309070 41 GCTGATAGCAAAGGCTTGGACACGGTGGTTGCCTTACTGGC GCTGATAGCAAAGGCTTGGACATGGTGGTTGCCTTACTGGC < 41bp 0.800286554942146 0.572440058613559 0.4640755 0.4444214 prediction 0.455692992657173 Functional Loss - PMPCA ENSG00000165688 CDS Human protein_coding chr9:139309050 chr9:139309052 nonsynonymous SNV 0.958 3 23 hm5C_associated_SNPs_76449 0 0 1 0 3 PMPCA chr9:139309007 3'AG 139309007 Downstream 46bp
chr9 139309052 139309052 1 + C T UCEC 139309050 + 139309030 139309070 41 GCTGATAGCAAAGGCTTGGACACGGTGGTTGCCTTACTGGC GCTGATAGCAAAGGCTTGGACATGGTGGTTGCCTTACTGGC < 41bp 0.800286554942146 0.572440058613559 0.4640755 0.4444214 prediction 0.455692992657173 Functional Loss - PMPCA ENSG00000165688 CDS Human protein_coding chr9:139309050 chr9:139309052 nonsynonymous SNV 0.958 3 23 hm5C_associated_SNPs_76449 0 0 1 0 3 PMPCA chr9:139309099 5'GT 139309099 Upstream 48bp
chr11 64359367 64359367 1 + G A COAD 64359364 + 64359344 64359384 41 ACCAGCTGGAGCGAGGCCGACACGGAGCCGTGTGTGGATGG ACCAGCTGGAGCGAGGCCGACACAGAGCCGTGTGTGGATGG < 41bp 0.727844091867134 0.482980134499335 0.618418 0.16938376 prediction 0.455688183734267 Functional Loss - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64359364 chr11:64359367 synonymous SNV . 0 24 hm5C_associated_SNPs_76450 0 0 0 0 1 SLC22A12 chr11:64359430 5'GT 64359430 Upstream 64bp
chr11 64359366 64359366 1 + C T HNSC 64359364 + 64359344 64359384 41 ACCAGCTGGAGCGAGGCCGACACGGAGCCGTGTGTGGATGG ACCAGCTGGAGCGAGGCCGACATGGAGCCGTGTGTGGATGG < 41bp 0.727844091867134 0.489782641098061 0.618418 0.39876488 prediction 0.455688183734267 Functional Loss - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64359364 chr11:64359366 nonsynonymous SNV 0.043 3 23 hm5C_associated_SNPs_76451 0 0 0 0 1 SLC22A12 chr11:64359430 5'GT 64359430 Upstream 65bp
chr1 156901785 156901785 1 + T C COAD 156901784 + 156901764 156901804 41 AGATGGGAAAGTTTTCATGCCTGGGAACAAGGTCCTTTTGC AGATGGGAAAGTTTTCATGCCCGGGAACAAGGTCCTTTTGC < 41bp 0.748710236135908 0.520868931365108 0.23925197 0.28711623 prediction 0.455682609541601 Functional Loss - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156901784 chr1:156901785 synonymous SNV . 0 22 hm5C_associated_SNPs_76453 0 0 0 0 3 LRRC71 chr1:156901705 3'AG 156901705 Downstream 81bp
chr1 156901785 156901785 1 + T C COAD 156901784 + 156901764 156901804 41 AGATGGGAAAGTTTTCATGCCTGGGAACAAGGTCCTTTTGC AGATGGGAAAGTTTTCATGCCCGGGAACAAGGTCCTTTTGC < 41bp 0.748710236135908 0.520868931365108 0.23925197 0.28711623 prediction 0.455682609541601 Functional Loss - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156901784 chr1:156901785 synonymous SNV . 0 22 hm5C_associated_SNPs_76453 0 0 0 0 3 LRRC71 chr1:156901708 3'AG 156901708 Downstream 78bp
chr1 156901785 156901785 1 + T C COAD 156901784 + 156901764 156901804 41 AGATGGGAAAGTTTTCATGCCTGGGAACAAGGTCCTTTTGC AGATGGGAAAGTTTTCATGCCCGGGAACAAGGTCCTTTTGC < 41bp 0.748710236135908 0.520868931365108 0.23925197 0.28711623 prediction 0.455682609541601 Functional Loss - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156901784 chr1:156901785 synonymous SNV . 0 22 hm5C_associated_SNPs_76453 0 0 0 0 3 LRRC71 chr1:156901819 5'GT 156901819 Upstream 35bp
chr4 1801486 1801486 1 + C T HNSC 1801484 + 1801464 1801504 41 TGCCTTGCAGACGCTCCATCCTCGGGAGATGACGAAGACGG TGCCTTGCAGACGCTCCATCCTTGGGAGATGACGAAGACGG < 41bp 0.727840859729666 0.461397647684671 0.09359014 0.07770452 prediction 0.455681719459332 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1801484 chr4:1801486 nonsynonymous SNV 0.818 4 23 hm5C_associated_SNPs_76454 0 0 1 0 2 FGFR3 chr4:1801474 3'AG 1801474 Downstream 13bp
chr4 1801486 1801486 1 + C T HNSC 1801484 + 1801464 1801504 41 TGCCTTGCAGACGCTCCATCCTCGGGAGATGACGAAGACGG TGCCTTGCAGACGCTCCATCCTTGGGAGATGACGAAGACGG < 41bp 0.727840859729666 0.461397647684671 0.09359014 0.07770452 prediction 0.455681719459332 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1801484 chr4:1801486 nonsynonymous SNV 0.818 4 23 hm5C_associated_SNPs_76454 0 0 1 0 2 FGFR3 chr4:1801539 5'GT 1801539 Upstream 54bp
chr3 58156321 58156321 1 - C T rs139582437 58156324 - 58156304 58156344 41 GGGGTGGTGGGCCCATGGACCCCGATCAGCAGCATGTTGGA GGGGTGGTGGGCCCATGGACCCCAATCAGCAGCATGTTGGA < 41bp 0.727837251649155 0.486857717307292 0.0662587 0.016637474 prediction 0.45567450329831 Functional Loss - FLNB ENSG00000136068 CDS Human antisense chr3:58156324 chr3:58156321 synonymous SNV . 0 24 hm5C_associated_SNPs_76456 0 0 0 0 1 FLNB-AS1 chr3:58156224 5'GT 58156224 Upstream 98bp
chr1 42619139 42619139 1 + A C rs1047047 42619135 + 42619115 42619155 41 GAGCGCGATGGGCTGCAGGGCTGCATCAGGGCTCCTGCCAG GAGCGCGATGGGCTGCAGGGCTGCCTCAGGGCTCCTGCCAG < 41bp 0.919205912405353 0.691368839091658 0.078416884 0.100911915 prediction 0.45567414662739 Functional Loss - GUCA2B ENSG00000044012 CDS Human protein_coding chr1:42619135 chr1:42619139 synonymous SNV . 0 25 hm5C_associated_SNPs_76457 0 0 0 0 1 GUCA2B chr1:42619211 5'GT 42619211 Upstream 73bp
chr3 113004367 113004367 1 + G A COAD 113004364 + 113004344 113004384 41 AGTCAGGGGTGAGGAGAGCCCCCGACAGTCCTGTCCTGGAA AGTCAGGGGTGAGGAGAGCCCCCAACAGTCCTGTCCTGGAA < 41bp 0.77916488735874 0.551332531836457 0.044660002 0.0821836 prediction 0.455664711044565 Functional Loss - BOC ENSG00000144857 CDS Human protein_coding chr3:113004364 chr3:113004367 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_76458 0 0 0 0 1 BOC chr3:113004412 5'GT 113004412 Upstream 46bp
chr1 158262570 158262570 1 + G T LUSC 158262568 + 158262548 158262588 41 CTGATGGGACATGGTATCTTCAGGTGATCCTGGAGGTGGCA CTGATGGGACATGGTATCTTCATGTGATCCTGGAGGTGGCA < 41bp 0.727825628643978 0.384104789189194 0.7316863 0.33534062 prediction 0.455651257287955 Functional Loss - CD1C ENSG00000158481 CDS Human protein_coding chr1:158262568 chr1:158262570 nonsynonymous SNV 0.039 1 23 hm5C_associated_SNPs_76463 0 0 0 0 1 CD1C chr1:158262664 5'GT 158262664 Upstream 95bp
chr19 17887474 17887474 1 + G A rs139750085 17887471 + 17887451 17887491 41 TGCTGGGAAACCCCAGAGACCTCGGTCTGCCCCCAGAACCA TGCTGGGAAACCCCAGAGACCTCAGTCTGCCCCCAGAACCA < 41bp 0.727819408468358 0.472300101796169 0.38694102 0.25423378 prediction 0.455638816936717 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17887471 chr19:17887474 nonsynonymous SNV 0.816 0 24 hm5C_associated_SNPs_76465 0 0 1 0 2 FCHO1 chr19:17887444 3'AG 17887444 Downstream 31bp
chr19 17887474 17887474 1 + G A rs139750085 17887471 + 17887451 17887491 41 TGCTGGGAAACCCCAGAGACCTCGGTCTGCCCCCAGAACCA TGCTGGGAAACCCCAGAGACCTCAGTCTGCCCCCAGAACCA < 41bp 0.727819408468358 0.472300101796169 0.38694102 0.25423378 prediction 0.455638816936717 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17887471 chr19:17887474 nonsynonymous SNV 0.816 0 24 hm5C_associated_SNPs_76465 0 0 1 0 2 FCHO1 chr19:17887495 5'GT 17887495 Upstream 22bp
chr1 110587643 110587643 1 + G A OV 110587640 + 110587620 110587660 41 CCTTCTTTATTCTCCAGTGACACGAACACAGTGGTGGGGCT CCTTCTTTATTCTCCAGTGACACAAACACAGTGGTGGGGCT < 41bp 0.756618127009951 0.528801159610297 0.35001925 0.14325038 prediction 0.455633934799307 Functional Loss - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110587640 chr1:110587643 synonymous SNV . 0 24 hm5C_associated_SNPs_76466 0 0 1 0 2 STRIP1 chr1:110587637 3'AG 110587637 Downstream 7bp
chr1 110587643 110587643 1 + G A OV 110587640 + 110587620 110587660 41 CCTTCTTTATTCTCCAGTGACACGAACACAGTGGTGGGGCT CCTTCTTTATTCTCCAGTGACACAAACACAGTGGTGGGGCT < 41bp 0.756618127009951 0.528801159610297 0.35001925 0.14325038 prediction 0.455633934799307 Functional Loss - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110587640 chr1:110587643 synonymous SNV . 0 24 hm5C_associated_SNPs_76466 0 0 1 0 2 STRIP1 chr1:110587700 5'GT 110587700 Upstream 58bp
chr17 73489821 73489821 1 + G A SKCM 73489818 + 73489798 73489838 41 CTACCAGCGAGCCTGCCTGTCTGGGTATTGCTCTGCCTTCG CTACCAGCGAGCCTGCCTGTCTGAGTATTGCTCTGCCTTCG < 41bp 0.786049449162178 0.558237194746752 0.8832911 0.40055254 prediction 0.455624508830851 Functional Loss - TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73489818 chr17:73489821 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_76470 0 0 1 0 1 TMEM94 chr17:73489780 3'AG 73489780 Downstream 42bp
chr5 167944883 167944883 1 + G T UCEC 167944880 + 167944860 167944900 41 CAAAAAGCTGCTCGAGAAACCAAGATTCTTTTGGATCATGA CAAAAAGCTGCTCGAGAAACCAATATTCTTTTGGATCATGA < 41bp 0.727806403712036 0.347224193641199 0.46235907 0.40828645 prediction 0.455612807424073 Functional Loss - RARS ENSG00000113643 CDS Human protein_coding chr5:167944880 chr5:167944883 nonsynonymous SNV 0.955 0 24 hm5C_associated_SNPs_76473 0 0 1 0 1 RARS chr5:167944820 3'AG 167944820 Downstream 64bp
chr22 18607010 18607010 1 + G A STAD 18607007 + 18606987 18607027 41 GGATGCAGCCAACAACTATGCCCGGGGCCACTACACGGTGG GGATGCAGCCAACAACTATGCCCAGGGCCACTACACGGTGG < 41bp 0.790183783421315 0.5623787414961 0.5715436 0.30871302 prediction 0.45561008385043 Functional Loss - TUBA8 ENSG00000183785 CDS Human protein_coding chr22:18607007 chr22:18607010 nonsynonymous SNV 0.949 4 24 hm5C_associated_SNPs_76475 0 0 1 0 2 TUBA8 chr22:18606923 3'AG 18606923 Downstream 88bp
chr22 18607010 18607010 1 + G A STAD 18607007 + 18606987 18607027 41 GGATGCAGCCAACAACTATGCCCGGGGCCACTACACGGTGG GGATGCAGCCAACAACTATGCCCAGGGCCACTACACGGTGG < 41bp 0.790183783421315 0.5623787414961 0.5715436 0.30871302 prediction 0.45561008385043 Functional Loss - TUBA8 ENSG00000183785 CDS Human protein_coding chr22:18607007 chr22:18607010 nonsynonymous SNV 0.949 4 24 hm5C_associated_SNPs_76475 0 0 1 0 2 TUBA8 chr22:18607071 5'GT 18607071 Upstream 62bp
chr11 10518462 10518462 1 + G A THCA 10518459 + 10518439 10518479 41 CTATCAACCCCCAAGATCATCGAGAGCTTCACCTCTTCCTT CTATCAACCCCCAAGATCATCGAAAGCTTCACCTCTTCCTT < 41bp 0.785022284261076 0.557223666282365 0.8696028 0.48553878 prediction 0.455597235957422 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10518459 chr11:10518462 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_76476 0 0 1 0 1 AMPD3 chr11:10518485 5'GT 10518485 Upstream 24bp
chr2 223559127 223559127 1 + G A SKCM 223559124 + 223559104 223559144 41 AGTGTGTCCTACATGGTAAGCAAGGAGGGAGGTGGAAACAT AGTGTGTCCTACATGGTAAGCAAAGAGGGAGGTGGAAACAT < 41bp 0.764686636897419 0.536888702237489 0.77158225 0.4500364 prediction 0.45559586931986 Functional Loss - MOGAT1 ENSG00000124003 CDS Human protein_coding chr2:223559124 chr2:223559127 synonymous SNV . 0 24 hm5C_associated_SNPs_76478 0 0 0 0 1 MOGAT1 chr2:223559081 3'AG 223559081 Downstream 47bp
chr16 30764558 30764558 1 + G C LUSC 30764557 + 30764537 30764577 41 CCCCTCCTTCCCTTAGGATGCGGAAGGGAGAGCTGTTTGAC CCCCTCCTTCCCTTAGGATGCCGAAGGGAGAGCTGTTTGAC < 41bp 0.727797755392816 0.393274591023803 0.8839817 0.5088614 prediction 0.455595510785632 Functional Loss - PHKG2 ENSG00000156873 CDS Human protein_coding chr16:30764557 chr16:30764558 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_76479 0 0 1 0 2 PHKG2 chr16:30764553 3'AG 30764553 Downstream 6bp
chr16 30764558 30764558 1 + G C LUSC 30764557 + 30764537 30764577 41 CCCCTCCTTCCCTTAGGATGCGGAAGGGAGAGCTGTTTGAC CCCCTCCTTCCCTTAGGATGCCGAAGGGAGAGCTGTTTGAC < 41bp 0.727797755392816 0.393274591023803 0.8839817 0.5088614 prediction 0.455595510785632 Functional Loss - PHKG2 ENSG00000156873 CDS Human protein_coding chr16:30764557 chr16:30764558 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_76479 0 0 1 0 2 PHKG2 chr16:30764618 5'GT 30764618 Upstream 61bp
chr20 42089160 42089160 1 + G A BLCA 42089157 + 42089137 42089177 41 TTGTTTTTCTCCTAATAGGTCTCGATCTAGAAGACGGTCAC TTGTTTTTCTCCTAATAGGTCTCAATCTAGAAGACGGTCAC < 41bp 0.743069153631805 0.515274537229138 0.100836664 0.06760839 prediction 0.455589232805334 Functional Loss - SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089157 chr20:42089160 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_76481 0 0 1 0 2 SRSF6 chr20:42089155 3'AG 42089155 Downstream 6bp
chr20 42089160 42089160 1 + G A BLCA 42089157 + 42089137 42089177 41 TTGTTTTTCTCCTAATAGGTCTCGATCTAGAAGACGGTCAC TTGTTTTTCTCCTAATAGGTCTCAATCTAGAAGACGGTCAC < 41bp 0.743069153631805 0.515274537229138 0.100836664 0.06760839 prediction 0.455589232805334 Functional Loss - SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089157 chr20:42089160 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_76481 0 0 1 0 2 SRSF6 chr20:42089238 5'GT 42089238 Upstream 79bp
chr13 80113872 80113872 1 + G T STAD 80113870 + 80113850 80113890 41 TTCAGTGATGCAGACCAGCTCAGAGTGGGGAATGATGGCAT TTCAGTGATGCAGACCAGCTCATAGTGGGGAATGATGGCAT < 41bp 0.727792398075134 0.386872255280682 0.888714 0.78944683 prediction 0.455584796150267 Functional Loss - NDFIP2 ENSG00000102471 CDS Human protein_coding chr13:80113870 chr13:80113872 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_76483 0 0 1 0 2 NDFIP2 chr13:80113817 3'AG 80113817 Downstream 56bp
chr13 80113872 80113872 1 + G T STAD 80113870 + 80113850 80113890 41 TTCAGTGATGCAGACCAGCTCAGAGTGGGGAATGATGGCAT TTCAGTGATGCAGACCAGCTCATAGTGGGGAATGATGGCAT < 41bp 0.727792398075134 0.386872255280682 0.888714 0.78944683 prediction 0.455584796150267 Functional Loss - NDFIP2 ENSG00000102471 CDS Human protein_coding chr13:80113870 chr13:80113872 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_76483 0 0 1 0 2 NDFIP2 chr13:80113910 5'GT 80113910 Upstream 39bp
chr1 28293048 28293048 1 + G A MESO 28293045 + 28293025 28293065 41 TGCACATCCTTCCTGGGCATCTCGTGGGCACTGCTCGACTA TGCACATCCTTCCTGGGCATCTCATGGGCACTGCTCGACTA < 41bp 0.772157885644599 0.544368982310918 0.47389612 0.51876163 prediction 0.455577806667363 Functional Loss - XKR8 ENSG00000158156 CDS Human protein_coding chr1:28293045 chr1:28293048 synonymous SNV . 0 24 hm5C_associated_SNPs_76486 0 0 0 0 1 XKR8 chr1:28293014 3'AG 28293014 Downstream 35bp
chr11 71816027 71816027 1 + G A UCEC 71816024 + 71816004 71816044 41 CCGCAGCAGGCCCTGGACTCCCCGACCTGTCCTGTGCTCTG CCGCAGCAGGCCCTGGACTCCCCAACCTGTCCTGTGCTCTG < 41bp 0.759309124600196 0.531526091162997 0.096352965 0.22805274 prediction 0.455566066874398 Functional Loss - LRTOMT ENSG00000184154 CDS Human protein_coding chr11:71816024 chr11:71816027 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_76488 0 0 0 0 2 LRTOMT chr11:71816010 3'AG 71816010 Downstream 18bp
chr11 71816027 71816027 1 + G A UCEC 71816024 + 71816004 71816044 41 CCGCAGCAGGCCCTGGACTCCCCGACCTGTCCTGTGCTCTG CCGCAGCAGGCCCTGGACTCCCCAACCTGTCCTGTGCTCTG < 41bp 0.759309124600196 0.531526091162997 0.096352965 0.22805274 prediction 0.455566066874398 Functional Loss - LRTOMT ENSG00000184154 CDS Human protein_coding chr11:71816024 chr11:71816027 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_76488 0 0 0 0 2 LRTOMT chr11:71816058 5'GT 71816058 Upstream 32bp
chr6 2770469 2770469 1 + T C UCEC 2770468 + 2770448 2770488 41 GCCGCTGTCGAGTGATTGTTCTTGAGAAGCTTCCAGTAGAG GCCGCTGTCGAGTGATTGTTCCTGAGAAGCTTCCAGTAGAG < 41bp 0.813893258004358 0.58611499812482 0.14041004 0.20287368 prediction 0.455556519759078 Functional Loss - WRNIP1 ENSG00000124535 CDS Human protein_coding chr6:2770468 chr6:2770469 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_76493 0 0 1 0 1 WRNIP1 chr6:2770429 3'AG 2770429 Downstream 41bp
chr1 179064186 179064186 1 + G A PCPG 179064183 + 179064163 179064203 41 TCCTGCCTTTGGAGTACCGTCACGTGAGGCTGTGTGCACGG TCCTGCCTTTGGAGTACCGTCACATGAGGCTGTGTGCACGG < 41bp 0.741121834605001 0.513347434843057 0.44282842 0.6007328 prediction 0.455548799523889 Functional Loss - TOR3A ENSG00000186283 CDS Human protein_coding chr1:179064183 chr1:179064186 nonsynonymous SNV 0.967 4 24 hm5C_associated_SNPs_76494 0 0 1 0 1 TOR3A chr1:179064103 3'AG 179064103 Downstream 84bp
chr1 32740034 32740034 1 + C T HNSC 32740032 + 32740012 32740052 41 GTCCCACTGGATGGCAAGGGCACGGTAAGAGGCGAGACAGG GTCCCACTGGATGGCAAGGGCATGGTAAGAGGCGAGACAGG < 41bp 0.797485222531109 0.569710855500704 0.32620263 0.35114956 prediction 0.455548734060809 Functional Loss - LCK ENSG00000182866 CDS Human protein_coding chr1:32740032 chr1:32740034 nonsynonymous SNV 0.954 0 23 hm5C_associated_SNPs_76495 0 0 0 0 1 LCK chr1:32740035 5'GT 32740035 Upstream 2bp
chr19 15164766 15164766 1 + G T KIRC 15164763 + 15164743 15164783 41 TGTACATCATACAGGCCTGTCGAGGAGGTGGGGACAGATCC TGTACATCATACAGGCCTGTCGATGAGGTGGGGACAGATCC < 41bp 0.727764073453164 0.329969765405132 0.46876526 0.16423574 prediction 0.455528146906328 Functional Loss - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15164763 chr19:15164766 stopgain 1.000 1 24 hm5C_associated_SNPs_76498 0 0 0 0 1 CASP14 chr19:15164769 5'GT 15164769 Upstream 4bp
chr6 6589096 6589096 1 + G A HNSC 6589093 + 6589073 6589113 41 AGCGGCTTGGAAGTGCTCTACCAGAGTTGCGGTAAGCCCTT AGCGGCTTGGAAGTGCTCTACCAAAGTTGCGGTAAGCCCTT < 41bp 0.771071650303831 0.543307670444862 0.5880851 0.22447091 prediction 0.455527959717938 Functional Loss - LY86 ENSG00000112799 CDS Human protein_coding chr6:6589093 chr6:6589096 synonymous SNV . 0 24 hm5C_associated_SNPs_76499 0 0 0 0 1 LY86 chr6:6589103 5'GT 6589103 Upstream 8bp
chr6 101841640 101841640 1 + G C rs529684903 101841639 + 101841619 101841659 41 CTGGTAGCTGGGGACTTTTCCGCCCGACCTCCTCCGGCTGC CTGGTAGCTGGGGACTTTTCCCCCCGACCTCCTCCGGCTGC < 41bp 0.727761594279769 0.428320961650325 0.8649646 0.7014193 prediction 0.455523188559537 Functional Loss - ASCC3;GRIK2 ENSG00000238999;ENSG00000164418 intergenic Human other chr6:101841639 chr6:101841640 . . 0 22 hm5C_associated_SNPs_76501 0 0 0 0 1 ASCC3;GRIK2 chr6:101841713 5'GT 101841713 Upstream 74bp
chr4 727556 727556 1 + G A rs35762433 727553 + 727533 727573 41 GGGTACCTCATCGACGCCACCACGGTGACCGAGTGTCTGCA GGGTACCTCATCGACGCCACCACAGTGACCGAGTGTCTGCA < 41bp 0.731958329386913 0.504203561797366 0.18331915 0.060044944 prediction 0.455509535179095 Functional Loss - PCGF3 ENSG00000185619 CDS Human protein_coding chr4:727553 chr4:727556 synonymous SNV . 0 24 hm5C_associated_SNPs_76503 0 0 1 0 2 PCGF3 chr4:727461 3'AG 727461 Downstream 96bp
chr4 727556 727556 1 + G A rs35762433 727553 + 727533 727573 41 GGGTACCTCATCGACGCCACCACGGTGACCGAGTGTCTGCA GGGTACCTCATCGACGCCACCACAGTGACCGAGTGTCTGCA < 41bp 0.731958329386913 0.504203561797366 0.18331915 0.060044944 prediction 0.455509535179095 Functional Loss - PCGF3 ENSG00000185619 CDS Human protein_coding chr4:727553 chr4:727556 synonymous SNV . 0 24 hm5C_associated_SNPs_76503 0 0 1 0 2 PCGF3 chr4:727578 5'GT 727578 Upstream 23bp
chr12 119419787 119419787 1 + G C UCEC 119419786 + 119419766 119419806 41 CGTCCCGAGAGCATCATTGTCGCCAGTATCACGGCCCGCAA CGTCCCGAGAGCATCATTGTCCCCAGTATCACGGCCCGCAA < 41bp 0.871023048650971 0.643268455668094 0.80268574 0.10228214 prediction 0.455509185965754 Functional Loss - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119419786 chr12:119419787 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_76504 0 0 0 0 1 SRRM4 chr12:119419818 5'GT 119419818 Upstream 32bp
chr8 15519781 15519781 1 + G T COAD 15519778 + 15519758 15519798 41 AACTTGGAGTTCATCTATAACAAGACTGGTTGGGCCATGGT AACTTGGAGTTCATCTATAACAATACTGGTTGGGCCATGGT < 41bp 0.7277518389612 0.347382949353029 0.47217238 0.23879883 prediction 0.4555036779224 Functional Loss - TUSC3 ENSG00000104723 CDS Human protein_coding chr8:15519778 chr8:15519781 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_76505 0 0 1 0 1 TUSC3 chr8:15519805 5'GT 15519805 Upstream 25bp
chr11 113849989 113849989 1 + G T SARC 113849987 + 113849967 113850007 41 CAGGTGCTGACCACCTACATCTGGTACCGGCAGGTGAGCAG CAGGTGCTGACCACCTACATCTTGTACCGGCAGGTGAGCAG < 41bp 0.727744871466059 0.371640193098897 0.3396201 0.24798918 prediction 0.455489742932119 Functional Loss - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113849987 chr11:113849989 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_76506 0 0 0 0 2 HTR3A chr11:113849955 3'AG 113849955 Downstream 35bp
chr11 113849989 113849989 1 + G T SARC 113849987 + 113849967 113850007 41 CAGGTGCTGACCACCTACATCTGGTACCGGCAGGTGAGCAG CAGGTGCTGACCACCTACATCTTGTACCGGCAGGTGAGCAG < 41bp 0.727744871466059 0.371640193098897 0.3396201 0.24798918 prediction 0.455489742932119 Functional Loss - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113849987 chr11:113849989 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_76506 0 0 0 0 2 HTR3A chr11:113849999 5'GT 113849999 Upstream 11bp
chr3 14523294 14523294 1 + G T SARC 14523292 + 14523272 14523312 41 CTGGCCCTTTCCTCCATGCTCTGCGTTCCCTTGGTCATCGT CTGGCCCTTTCCTCCATGCTCTTCGTTCCCTTGGTCATCGT < 41bp 0.727738890582287 0.380666377069463 0.10976687 0.078222126 prediction 0.455477781164575 Functional Loss - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14523292 chr3:14523294 nonsynonymous SNV 0.554 1 23 hm5C_associated_SNPs_76511 0 0 1 0 1 SLC6A6 chr3:14523349 5'GT 14523349 Upstream 56bp
chr18 909495 909495 1 + G A SKCM 909492 + 909472 909512 41 GACGACGCGGAGCCGCTCTCCAAGCGCCACTCGGACGGGAT GACGACGCGGAGCCGCTCTCCAAACGCCACTCGGACGGGAT < 41bp 0.727732412418974 0.493849377020164 0.92284465 0.8512229 prediction 0.455464824837948 Functional Loss - ADCYAP1 ENSG00000141433 CDS Human protein_coding chr18:909492 chr18:909495 synonymous SNV . 0 24 hm5C_associated_SNPs_76514 0 0 0 0 1 ADCYAP1 chr18:909447 3'AG 909447 Downstream 49bp
chr7 100212577 100212577 1 + C T COAD 100212575 + 100212555 100212595 41 GCCTTCCTGCTGCTCCCACTCCCGGACGAACTCGGCAGCCA GCCTTCCTGCTGCTCCCACTCCTGGACGAACTCGGCAGCCA < 41bp 0.826398679002889 0.59867415871221 0.2912026 0.30960548 prediction 0.455449040581358 Functional Loss - MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100212575 chr7:100212577 nonsynonymous SNV 0.540 0 23 hm5C_associated_SNPs_76516 0 0 1 0 2 MOSPD3 chr7:100212490 3'AG 100212490 Downstream 88bp
chr7 100212577 100212577 1 + C T COAD 100212575 + 100212555 100212595 41 GCCTTCCTGCTGCTCCCACTCCCGGACGAACTCGGCAGCCA GCCTTCCTGCTGCTCCCACTCCTGGACGAACTCGGCAGCCA < 41bp 0.826398679002889 0.59867415871221 0.2912026 0.30960548 prediction 0.455449040581358 Functional Loss - MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100212575 chr7:100212577 nonsynonymous SNV 0.540 0 23 hm5C_associated_SNPs_76516 0 0 1 0 2 MOSPD3 chr7:100212654 5'GT 100212654 Upstream 78bp
chr17 79974973 79974973 1 + G A rs74795907 79974970 + 79974950 79974990 41 AGGAGCCTGGGCAAGGTGCCCAAGTGGCTGAAGCTGCCGGG AGGAGCCTGGGCAAGGTGCCCAAATGGCTGAAGCTGCCGGG < 41bp 0.758634362933093 0.530910357480499 0.671057 0.48842704 prediction 0.455448010905188 Functional Loss - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79974970 chr17:79974973 synonymous SNV . 0 24 hm5C_associated_SNPs_76517 0 0 1 0 1 ASPSCR1 chr17:79974989 5'GT 79974989 Upstream 17bp
chr7 100363120 100363120 1 + C T UCS 100363118 + 100363098 100363138 41 CGGGCTTCGTCCTCAGTGGCCTCGAGTGCATACCTCGCTCC CGGGCTTCGTCCTCAGTGGCCTTGAGTGCATACCTCGCTCC < 41bp 0.737501873489532 0.50977799797323 0.29195017 0.27895615 prediction 0.455447751032604 Functional Loss - ZAN ENSG00000146839 CDS Human protein_coding chr7:100363118 chr7:100363120 synonymous SNV . 0 23 hm5C_associated_SNPs_76518 0 0 0 0 1 ZAN chr7:100363177 5'GT 100363177 Upstream 58bp
chrX 153549180 153549180 1 + G A rs192912565 153549177 + 153549157 153549197 41 CACCTTTGCTGCCTTTCTGACTCGAGCATTTGATCACATCC CACCTTTGCTGCCTTTCTGACTCAAGCATTTGATCACATCC < 41bp 0.781388015249532 0.553665475220615 0.27415127 0.089449555 prediction 0.455445080057835 Functional Loss - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153549177 chrX:153549180 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_76521 0 0 0 0 2 TKTL1 chrX:153549104 3'AG 153549104 Downstream 77bp
chrX 153549180 153549180 1 + G A rs192912565 153549177 + 153549157 153549197 41 CACCTTTGCTGCCTTTCTGACTCGAGCATTTGATCACATCC CACCTTTGCTGCCTTTCTGACTCAAGCATTTGATCACATCC < 41bp 0.781388015249532 0.553665475220615 0.27415127 0.089449555 prediction 0.455445080057835 Functional Loss - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153549177 chrX:153549180 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_76521 0 0 0 0 2 TKTL1 chrX:153549260 5'GT 153549260 Upstream 81bp
chr9 133280335 133280335 1 + G C rs115395375 133280331 + 133280311 133280351 41 CGCCTTCTTGCCTTGCAAGGCGAGGGGCAGTCCTGAGCCCA CGCCTTCTTGCCTTGCAAGGCGAGCGGCAGTCCTGAGCCCA < 41bp 0.727721622604634 0.437457974462141 0.8626977 0.31822532 prediction 0.455443245209267 Functional Loss - HMCN2 ENSG00000215428 CDS Human other chr9:133280331 chr9:133280335 nonsynonymous SNV 0.974 0 25 hm5C_associated_SNPs_76523 0 0 0 0 1 HMCN2 chr9:133280256 3'AG 133280256 Downstream 80bp
chr12 4848450 4848450 1 + C T SKCM 4848448 + 4848428 4848468 41 TATCATCAACCGGACGCCCTCTCGATTGTTGAAGGAAATCA TATCATCAACCGGACGCCCTCTTGATTGTTGAAGGAAATCA < 41bp 0.856588962401874 0.628870134214259 0.38310403 0.0256719 prediction 0.45543765637523 Functional Loss - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4848448 chr12:4848450 stopgain 0.001 0 23 hm5C_associated_SNPs_76525 0 0 0 0 1 GALNT8 chr12:4848495 5'GT 4848495 Upstream 46bp
chrX 12809712 12809712 1 + G C BLCA 12809711 + 12809691 12809731 41 GGAGCTGGGCAAGGTGGTCACGAAGAAGTTCAGCAACCAGG GGAGCTGGGCAAGGTGGTCACCAAGAAGTTCAGCAACCAGG < 41bp 0.86831301464825 0.640600185657008 0.6997168 0.06155753 prediction 0.455425657982483 Functional Loss - PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12809711 chrX:12809712 synonymous SNV . 0 22 hm5C_associated_SNPs_76527 0 0 1 0 1 PRPS2 chrX:12809738 5'GT 12809738 Upstream 27bp
chr3 39178836 39178836 1 + G A UCEC 39178833 + 39178813 39178853 41 GCCACCAGGGAGAAGGCTAACATGGAGGCTGCGCTGGGCAG GCCACCAGGGAGAAGGCTAACATAGAGGCTGCGCTGGGCAG < 41bp 0.750049269818177 0.522338356267283 0.30070674 0.14452505 prediction 0.455421827101789 Functional Loss - TTC21A ENSG00000168026 CDS Human protein_coding chr3:39178833 chr3:39178836 nonsynonymous SNV 0.267 0 24 hm5C_associated_SNPs_76529 0 0 0 0 1 TTC21A chr3:39178878 5'GT 39178878 Upstream 43bp
chr1 155717580 155717580 1 + G A CESC 155717577 + 155717557 155717597 41 TCCAGATCCTGTGTGACCTGCACGATGGCTTCTCTGGGGTA TCCAGATCCTGTGTGACCTGCACAATGGCTTCTCTGGGGTA < 41bp 0.770173725334071 0.542464978329301 0.3246907 0.08376852 prediction 0.455417494009539 Functional Loss - MSTO2P ENSG00000125459 CDS Human protein_coding chr1:155717577 chr1:155717580 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_76531 0 0 0 0 1 MSTO2P chr1:155717553 3'AG 155717553 Downstream 28bp
chr9 124535728 124535728 1 + C T SKCM 124535726 + 124535706 124535746 41 CTGAGGCAGCAGTCCTCTTCCTCCAAGGGGGACAGCCCAGA CTGAGGCAGCAGTCCTCTTCCTTCAAGGGGGACAGCCCAGA < 41bp 0.72770799872383 0.428622069817828 0.9417256 0.1741074 prediction 0.45541599744766 Functional Loss - DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124535726 chr9:124535728 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_76532 0 0 0 0 1 DAB2IP chr9:124535774 5'GT 124535774 Upstream 47bp
chr17 33504628 33504628 1 + C T UCEC 33504625 + 33504605 33504645 41 TGTCTGGGCGGAGTGACAAACTCCGGTGAGTGTGGTGAGTG TGTCTGGGCGGAGTGACAAACTCTGGTGAGTGTGGTGAGTG < 41bp 0.729500205893172 0.501794753379014 0.73999864 0.36643416 prediction 0.455410905028316 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33504625 chr17:33504628 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_76534 0 0 0 0 1 UNC45B chr17:33504629 5'GT 33504629 Upstream 2bp
chr19 50926215 50926215 1 + G A SKCM 50926212 + 50926192 50926232 41 ACCCCCCACCTACAGCCCTGCAGGGAACCTCGAACTGGCCC ACCCCCCACCTACAGCCCTGCAGAGAACCTCGAACTGGCCC < 41bp 0.772895324525145 0.545190468242867 0.899275 0.40466407 prediction 0.455409712564556 Functional Loss - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50926212 chr19:50926215 nonsynonymous SNV 0.010 2 24 hm5C_associated_SNPs_76535 0 0 0 0 1 SPIB chr19:50926294 5'GT 50926294 Upstream 80bp
chr21 45563112 45563112 1 + G T LUAD 45563109 + 45563089 45563129 41 TGTGCTGCATTGCACCTGTCCTCGCGGCCAAGGTGCTCAGA TGTGCTGCATTGCACCTGTCCTCTCGGCCAAGGTGCTCAGA < 41bp 0.727702971528415 0.32233018680776 0.5533923 0.19500446 prediction 0.45540594305683 Functional Loss - C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45563109 chr21:45563112 nonsynonymous SNV 0.241 4 24 hm5C_associated_SNPs_76537 0 0 1 0 1 C21orf33 chr21:45563087 3'AG 45563087 Downstream 26bp
chr7 12683925 12683925 1 + G A SKCM 12683922 + 12683902 12683942 41 AGTGCAAAACCTTAAGGATCCAAGAAGGCGAGGAGCCAGGT AGTGCAAAACCTTAAGGATCCAAAAAGGCGAGGAGCCAGGT < 41bp 0.757279636861412 0.529579512023155 0.26761368 0.10113427 prediction 0.455400249676515 Functional Loss - SCIN ENSG00000006747 CDS Human protein_coding chr7:12683922 chr7:12683925 nonsynonymous SNV 0.965 4 24 hm5C_associated_SNPs_76539 0 0 0 0 1 SCIN chr7:12683940 5'GT 12683940 Upstream 16bp
chr15 43638163 43638163 1 + C T SKCM 43638161 + 43638141 43638181 41 GTACAGTTCTTGGCCTTGACCTCAGTGGAGACCCTACTGTA GTACAGTTCTTGGCCTTGACCTTAGTGGAGACCCTACTGTA < 41bp 0.727699067685119 0.433667890820502 0.11529565 0.061810464 prediction 0.455398135370239 Functional Loss - ADAL ENSG00000168803 CDS Human protein_coding chr15:43638161 chr15:43638163 synonymous SNV . 0 23 hm5C_associated_SNPs_76541 0 0 0 0 1 ADAL chr15:43638178 5'GT 43638178 Upstream 16bp
chr16 81053826 81053826 1 + C T COAD 81053823 + 81053803 81053843 41 CGTGGTGTACTACTCCCAGACTCCGTACGCCTTCACGTCCT CGTGGTGTACTACTCCCAGACTCTGTACGCCTTCACGTCCT < 41bp 0.753435747699983 0.525737457917762 0.54633015 0.05318457 prediction 0.455396579564443 Functional Loss - CENPN ENSG00000166451 CDS Human protein_coding chr16:81053823 chr16:81053826 nonsynonymous SNV 0.106 3 24 hm5C_associated_SNPs_76542 0 0 1 0 1 CENPN chr16:81053881 5'GT 81053881 Upstream 56bp
chr12 113348980 113348980 1 + G A BLCA 113348977 + 113348957 113348997 41 ACAGAACTACAGAGAGACTTCCTGAAGCAGCGCCCCACCAA ACAGAACTACAGAGAGACTTCCTAAAGCAGCGCCCCACCAA < 41bp 0.772395908089157 0.544699338226935 0.16004875 0.07073441 prediction 0.455393139724444 Functional Loss - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113348977 chr12:113348980 synonymous SNV . 0 24 hm5C_associated_SNPs_76543 0 0 0 0 2 OAS1 chr12:113348903 3'AG 113348903 Downstream 78bp
chr12 113348980 113348980 1 + G A BLCA 113348977 + 113348957 113348997 41 ACAGAACTACAGAGAGACTTCCTGAAGCAGCGCCCCACCAA ACAGAACTACAGAGAGACTTCCTAAAGCAGCGCCCCACCAA < 41bp 0.772395908089157 0.544699338226935 0.16004875 0.07073441 prediction 0.455393139724444 Functional Loss - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113348977 chr12:113348980 synonymous SNV . 0 24 hm5C_associated_SNPs_76543 0 0 0 0 2 OAS1 chr12:113349040 5'GT 113349040 Upstream 61bp
chr22 35811830 35811830 1 + G A rs188820496 35811827 + 35811807 35811847 41 ACCCCACTGCCCCAGGTATACACGTCTGGGAAAGGCAGCAG ACCCCACTGCCCCAGGTATACACATCTGGGAAAGGCAGCAG < 41bp 0.756734519700779 0.529038804381197 0.31619334 0.15446642 prediction 0.455391430639164 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35811827 chr22:35811830 synonymous SNV . 0 24 hm5C_associated_SNPs_76544 0 0 1 0 1 MCM5 chr22:35811822 3'AG 35811822 Downstream 9bp
chr16 216420 216420 1 + G C rs118054833 216419 + 216399 216439 41 CCTGCGCGCCGCGCTGAGCCCGCTGGCGGACCTGCACGCGC CCTGCGCGCCGCGCTGAGCCCCCTGGCGGACCTGCACGCGC < 41bp 0.875091198483048 0.647398833226603 0.58982885 0.30057698 prediction 0.45538473051289 Functional Loss - HBM ENSG00000206177 CDS Human protein_coding chr16:216419 chr16:216420 synonymous SNV . 0 22 hm5C_associated_SNPs_76546 0 0 0 0 1 HBM chr16:216471 5'GT 216471 Upstream 52bp
chr2 1480864 1480864 1 + G A SKCM 1480861 + 1480841 1480881 41 CTCCCCTTTGCCTGCAGCTCCCGGAGGAGGCCCGGCCGGCC CTCCCCTTTGCCTGCAGCTCCCGAAGGAGGCCCGGCCGGCC < 41bp 0.766579200984221 0.538888133839897 0.9201002 0.7925292 prediction 0.455382134288647 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1480861 chr2:1480864 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_76548 0 0 0 0 1 TPO chr2:1480858 3'AG 1480858 Downstream 7bp
chr22 41791804 41791804 1 + G A STAD 41791801 + 41791781 41791821 41 CAACGTGGCAGCTAAACGGTCACGGGATGCCCGGCGCCTGA CAACGTGGCAGCTAAACGGTCACAGGATGCCCGGCGCCTGA < 41bp 0.755213863367807 0.527525927798144 0.7388761 0.44801342 prediction 0.455375871139326 Functional Loss - TEF ENSG00000167074 CDS Human protein_coding chr22:41791801 chr22:41791804 nonsynonymous SNV 0.895 4 24 hm5C_associated_SNPs_76550 0 0 0 0 1 TEF chr22:41791749 3'AG 41791749 Downstream 56bp
chr1 55277779 55277779 1 + C T LUAD 55277777 + 55277757 55277797 41 CGACCTTGAGACATATGTGGCACGATCCGTCGGCACCCGCG CGACCTTGAGACATATGTGGCATGATCCGTCGGCACCCGCG < 41bp 0.827150988474801 0.599465273094581 0.07195616 0.14405918 prediction 0.455371430760441 Functional Loss - LEXM ENSG00000162398 CDS Human protein_coding chr1:55277777 chr1:55277779 stopgain 0.000 0 23 hm5C_associated_SNPs_76551 0 0 0 0 2 LEXM chr1:55277719 3'AG 55277719 Downstream 61bp
chr1 55277779 55277779 1 + C T LUAD 55277777 + 55277757 55277797 41 CGACCTTGAGACATATGTGGCACGATCCGTCGGCACCCGCG CGACCTTGAGACATATGTGGCATGATCCGTCGGCACCCGCG < 41bp 0.827150988474801 0.599465273094581 0.07195616 0.14405918 prediction 0.455371430760441 Functional Loss - LEXM ENSG00000162398 CDS Human protein_coding chr1:55277777 chr1:55277779 stopgain 0.000 0 23 hm5C_associated_SNPs_76551 0 0 0 0 2 LEXM chr1:55277862 5'GT 55277862 Upstream 84bp
chr18 28711619 28711619 1 - C T SKCM 28711622 - 28711602 28711642 41 AGTCCGTCAAGGGAGTGGGGCAGGGAGATACTGGCAGATAT AGTCCGTCAAGGGAGTGGGGCAGAGAGATACTGGCAGATAT < 41bp 0.769721259945268 0.542039357261329 0.549838 0.30952024 prediction 0.455363805367879 Functional Loss - DSC1 ENSG00000134765 CDS Human protein_coding chr18:28711622 chr18:28711619 nonsynonymous SNV 0.111 2 24 hm5C_associated_SNPs_76554 0 0 0 0 1 DSC1 chr18:28711557 5'GT 28711557 Upstream 63bp
chr18 61233928 61233928 1 + G T LUAD 61233925 + 61233905 61233945 41 ATCGGTGGTCCTGTCCTTCCCCCGGTTCACCCTGGAAGACA ATCGGTGGTCCTGTCCTTCCCCCTGTTCACCCTGGAAGACA < 41bp 0.727681783200748 0.325802897272138 0.13450736 0.05134952 prediction 0.455363566401495 Functional Loss - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61233925 chr18:61233928 nonsynonymous SNV 0.978 2 24 hm5C_associated_SNPs_76555 0 0 0 0 1 SERPINB12 chr18:61233840 3'AG 61233840 Downstream 89bp
chr3 51979064 51979064 1 + G T UCEC 51979061 + 51979041 51979081 41 TGAGCAAGCAACAGATTGCACGGGGTTTCGAGGCCTTGGAG TGAGCAAGCAACAGATTGCACGGTGTTTCGAGGCCTTGGAG < 41bp 0.931594932694211 0.703915424073636 0.9252962 0.8489635 prediction 0.45535901724115 Functional Loss - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51979061 chr3:51979064 nonsynonymous SNV 0.264 4 24 hm5C_associated_SNPs_76556 0 0 1 0 1 PARP3 chr3:51979014 3'AG 51979014 Downstream 51bp
chr16 23364372 23364372 1 + G A CESC 23364369 + 23364349 23364389 41 CAGAAAAGATCTGTAATGCCCACGGGTGCAAAATGGCCATG CAGAAAAGATCTGTAATGCCCACAGGTGCAAAATGGCCATG < 41bp 0.786260900056003 0.55858457575757 0.54361737 0.44684947 prediction 0.455352648596865 Functional Loss - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23364369 chr16:23364372 nonsynonymous SNV 0.604 0 24 hm5C_associated_SNPs_76558 0 0 0 0 1 SCNN1B chr16:23364395 5'GT 23364395 Upstream 24bp
chr17 16615093 16615093 1 + A C rs371240426 16615092 + 16615072 16615112 41 ATGATGATGATGGACTAAATCAGCAGATTCCTAGGAAGGAA ATGATGATGATGGACTAAATCCGCAGATTCCTAGGAAGGAA < 41bp 0.789579085196193 0.561904771366394 0.80034685 0.4030348 prediction 0.455348627659598 Functional Loss - CCDC144A ENSG00000170160;ENSG00000266302 CDS Human other chr17:16615092 chr17:16615093 nonsynonymous SNV 0.017 1 22 hm5C_associated_SNPs_76559 0 0 0 0 1 CCDC144A chr17:16615129 5'GT 16615129 Upstream 37bp
chr16 2880751 2880751 1 + G A SKCM 2880748 + 2880728 2880768 41 GCACCACTGAAGACTACGACCATGAAATCACAGGGCTGCGG GCACCACTGAAGACTACGACCATAAAATCACAGGGCTGCGG < 41bp 0.766926162333051 0.539253198386961 0.21429431 0.2697748 prediction 0.45534592789218 Functional Loss - ZG16B ENSG00000162078 CDS Human protein_coding chr16:2880748 chr16:2880751 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_76561 0 0 0 0 2 ZG16B chr16:2880695 3'AG 2880695 Downstream 57bp
chr16 2880751 2880751 1 + G A SKCM 2880748 + 2880728 2880768 41 GCACCACTGAAGACTACGACCATGAAATCACAGGGCTGCGG GCACCACTGAAGACTACGACCATAAAATCACAGGGCTGCGG < 41bp 0.766926162333051 0.539253198386961 0.21429431 0.2697748 prediction 0.45534592789218 Functional Loss - ZG16B ENSG00000162078 CDS Human protein_coding chr16:2880748 chr16:2880751 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_76561 0 0 0 0 2 ZG16B chr16:2880797 5'GT 2880797 Upstream 47bp
chr1 151015815 151015815 1 + C T UCEC 151015813 + 151015793 151015833 41 CCTTACACTCTCCAGGTTACCACGGTGATGGCCTCAATGCT CCTTACACTCTCCAGGTTACCATGGTGATGGCCTCAATGCT < 41bp 0.72767248650028 0.449702897553082 0.62774754 0.4132312 prediction 0.455344973000559 Functional Loss - BNIPL ENSG00000163141 CDS Human protein_coding chr1:151015813 chr1:151015815 synonymous SNV . 0 23 hm5C_associated_SNPs_76562 0 0 0 0 2 BNIPL chr1:151015808 3'AG 151015808 Downstream 8bp
chr1 151015815 151015815 1 + C T UCEC 151015813 + 151015793 151015833 41 CCTTACACTCTCCAGGTTACCACGGTGATGGCCTCAATGCT CCTTACACTCTCCAGGTTACCATGGTGATGGCCTCAATGCT < 41bp 0.72767248650028 0.449702897553082 0.62774754 0.4132312 prediction 0.455344973000559 Functional Loss - BNIPL ENSG00000163141 CDS Human protein_coding chr1:151015813 chr1:151015815 synonymous SNV . 0 23 hm5C_associated_SNPs_76562 0 0 0 0 2 BNIPL chr1:151015910 5'GT 151015910 Upstream 96bp
chrX 30738986 30738986 1 + G A SKCM 30738983 + 30738963 30739003 41 CCTCAGTGAAGCCCTCAATGCCCGAAACCACTGCACTGGGT CCTCAGTGAAGCCCTCAATGCCCAAAACCACTGCACTGGGT < 41bp 0.739189254445175 0.511518157223312 0.16928655 0.092941135 prediction 0.455342194443726 Functional Loss - GK ENSG00000198814 CDS Human protein_coding chrX:30738983 chrX:30738986 nonsynonymous SNV 0.970 4 24 hm5C_associated_SNPs_76563 0 0 1 0 1 GK chrX:30738969 3'AG 30738969 Downstream 18bp
chr4 99966411 99966411 1 + G A UCEC 99966408 + 99966388 99966428 41 TGGAGAAGTGGATGATGGAGCACGGAAACTTGTTCAGACCA TGGAGAAGTGGATGATGGAGCACAGAAACTTGTTCAGACCA < 41bp 0.758194437630762 0.530523723539014 0.27730262 0.13425076 prediction 0.455341428183497 Functional Loss - METAP1 ENSG00000164024 CDS Human protein_coding chr4:99966408 chr4:99966411 nonsynonymous SNV 0.989 1 24 hm5C_associated_SNPs_76564 0 0 1 0 1 METAP1 chr4:99966461 5'GT 99966461 Upstream 51bp
chr1 117560035 117560035 1 + C T SKCM 117560033 + 117560013 117560053 41 GTGCAGAGTATCTGAGAAGTCTCGGAACCAGGCCAGAGATC GTGCAGAGTATCTGAGAAGTCTTGGAACCAGGCCAGAGATC < 41bp 0.834214895524203 0.606546732113715 0.2965765 0.14440665 prediction 0.455336326820977 Functional Loss - CD101 ENSG00000134256 CDS Human protein_coding chr1:117560033 chr1:117560035 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_76566 0 0 0 0 1 CD101 chr1:117560095 5'GT 117560095 Upstream 61bp
chr3 52570868 52570868 1 + G A UCEC 52570865 + 52570845 52570885 41 TCCTGCCCTTCTTTTTTGTCCTGGGAGGAACGATGGAGTGG TCCTGCCCTTCTTTTTTGTCCTGAGAGGAACGATGGAGTGG < 41bp 0.777604737254558 0.549940321439163 0.40708512 0.19563499 prediction 0.455328831630791 Functional Loss - SMIM4 ENSG00000168273 CDS Human protein_coding chr3:52570865 chr3:52570868 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_76567 0 0 1 0 1 SMIM4 chr3:52570922 5'GT 52570922 Upstream 55bp
chr12 52115401 52115401 1 + G A COAD 52115398 + 52115378 52115418 41 AAGAGCAGCATCTTCAGTTTCAGGGGACCTGGGCGGTTCCG AAGAGCAGCATCTTCAGTTTCAGAGGACCTGGGCGGTTCCG < 41bp 0.772508390844693 0.544845111047542 0.94600534 0.9256134 prediction 0.455326559594301 Functional Loss - SCN8A ENSG00000196876 CDS Human protein_coding chr12:52115398 chr12:52115401 synonymous SNV . 0 24 hm5C_associated_SNPs_76568 0 0 0 0 1 SCN8A chr12:52115330 3'AG 52115330 Downstream 72bp
chr16 815565 815565 1 + T C rs77260498 815564 + 815544 815584 41 CTGTCTCCACGATGGACGCTCTGCGGGGCCTGCTGCCCGTG CTGTCTCCACGATGGACGCTCCGCGGGGCCTGCTGCCCGTG < 41bp 0.72766242739161 0.495659675495538 0.25868487 0.43875352 prediction 0.45532485478322 Functional Loss - MSLN ENSG00000102854 CDS Human protein_coding chr16:815564 chr16:815565 nonsynonymous SNV 0.143 3 22 hm5C_associated_SNPs_76569 0 0 0 0 2 MSLN chr16:815527 3'AG 815527 Downstream 39bp
chr16 815565 815565 1 + T C rs77260498 815564 + 815544 815584 41 CTGTCTCCACGATGGACGCTCTGCGGGGCCTGCTGCCCGTG CTGTCTCCACGATGGACGCTCCGCGGGGCCTGCTGCCCGTG < 41bp 0.72766242739161 0.495659675495538 0.25868487 0.43875352 prediction 0.45532485478322 Functional Loss - MSLN ENSG00000102854 CDS Human protein_coding chr16:815564 chr16:815565 nonsynonymous SNV 0.143 3 22 hm5C_associated_SNPs_76569 0 0 0 0 2 MSLN chr16:815617 5'GT 815617 Upstream 53bp
chr10 116602895 116602895 1 + C T BLCA 116602893 + 116602873 116602913 41 TGTCCACAAGCTTGGATAACCTCAGTGTCACCTCACTGCCA TGTCCACAAGCTTGGATAACCTTAGTGTCACCTCACTGCCA < 41bp 0.727658853658637 0.445168929861417 0.26515448 0.24881709 prediction 0.455317707317273 Functional Loss - FAM160B1 ENSG00000151553 CDS Human protein_coding chr10:116602893 chr10:116602895 synonymous SNV . 0 23 hm5C_associated_SNPs_76571 0 0 1 0 1 FAM160B1 chr10:116602985 5'GT 116602985 Upstream 91bp
chr7 6634101 6634101 1 + G A COAD 6634098 + 6634078 6634118 41 GTTTACTGTGTGAGGTTAGCCAAGGCCCTTGTAGATGACTA GTTTACTGTGTGAGGTTAGCCAAAGCCCTTGTAGATGACTA < 41bp 0.754465960459085 0.526808434433685 0.38914454 0.36401916 prediction 0.4553150520508 Functional Loss - C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6634098 chr7:6634101 synonymous SNV . 0 24 hm5C_associated_SNPs_76572 0 0 1 0 1 C7orf26 chr7:6634066 3'AG 6634066 Downstream 36bp
chr5 139216501 139216501 1 + G T LUAD 139216499 + 139216479 139216519 41 TGGATGGTGGCAACCCCTTCCTGGATGTCCCACAGGCGCTC TGGATGGTGGCAACCCCTTCCTTGATGTCCCACAGGCGCTC < 41bp 0.899547180718952 0.671896834737883 0.3683424 0.09094435 prediction 0.455300691962139 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139216499 chr5:139216501 synonymous SNV . 0 23 hm5C_associated_SNPs_76576 0 0 0 0 1 PSD2 chr5:139216586 5'GT 139216586 Upstream 86bp
chr22 41625657 41625657 1 - G A UCEC 41625659 - 41625639 41625679 41 CCAGCCCGGTGGCTCTTACTCTCGCCAGGAACAGGCTCCGA CCAGCCCGGTGGCTCTTACTCTTGCCAGGAACAGGCTCCGA < 41bp 0.769667533712553 0.542020592342737 0.06072387 0.024386197 prediction 0.455293882739633 Functional Loss - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41625659 chr22:41625657 nonsynonymous SNV 0.473 1 23 hm5C_associated_SNPs_76579 0 0 1 0 1 CHADL chr22:41625734 3'AG 41625734 Downstream 78bp
chr20 17956382 17956382 1 + C T UCEC 17956380 + 17956360 17956400 41 CCTTGGAAAGCATACTTTCACCCCAGGAAACCTTAAAAGAG CCTTGGAAAGCATACTTTCACCTCAGGAAACCTTAAAAGAG < 41bp 0.727646764368545 0.452261548930627 0.14395303 0.10700458 prediction 0.455293528737091 Functional Loss - MGME1 ENSG00000125871 CDS Human protein_coding chr20:17956380 chr20:17956382 synonymous SNV . 0 23 hm5C_associated_SNPs_76580 0 0 1 0 1 MGME1 chr20:17956327 3'AG 17956327 Downstream 56bp
chr5 58120914 58120914 1 + G T THCA 58120911 + 58120891 58120931 41 GGGACAATGCCCAAGTTATTCTGGTTGGGAACAAGTGTGAC GGGACAATGCCCAAGTTATTCTGTTTGGGAACAAGTGTGAC < 41bp 0.727644580190176 0.350362415948386 0.17560357 0.115982294 prediction 0.455289160380351 Functional Loss - RAB3C ENSG00000152932 CDS Human protein_coding chr5:58120911 chr5:58120914 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_76582 0 0 0 0 2 RAB3C chr5:58120865 3'AG 58120865 Downstream 50bp
chr5 58120914 58120914 1 + G T THCA 58120911 + 58120891 58120931 41 GGGACAATGCCCAAGTTATTCTGGTTGGGAACAAGTGTGAC GGGACAATGCCCAAGTTATTCTGTTTGGGAACAAGTGTGAC < 41bp 0.727644580190176 0.350362415948386 0.17560357 0.115982294 prediction 0.455289160380351 Functional Loss - RAB3C ENSG00000152932 CDS Human protein_coding chr5:58120911 chr5:58120914 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_76582 0 0 0 0 2 RAB3C chr5:58120989 5'GT 58120989 Upstream 76bp
chr19 42818427 42818427 1 + T C UCEC 42818426 + 42818406 42818446 41 ACTGGGCCCCTTTTTCAGGACTGGGTGTTCCTGACAAGATT ACTGGGCCCCTTTTTCAGGACCGGGTGTTCCTGACAAGATT < 41bp 0.727643657372166 0.485942657821333 0.06961861 0.2876969 prediction 0.455287314744331 Functional Loss - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42818426 chr19:42818427 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_76583 0 0 1 0 2 TMEM145 chr19:42818424 3'AG 42818424 Downstream 4bp
chr19 42818427 42818427 1 + T C UCEC 42818426 + 42818406 42818446 41 ACTGGGCCCCTTTTTCAGGACTGGGTGTTCCTGACAAGATT ACTGGGCCCCTTTTTCAGGACCGGGTGTTCCTGACAAGATT < 41bp 0.727643657372166 0.485942657821333 0.06961861 0.2876969 prediction 0.455287314744331 Functional Loss - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42818426 chr19:42818427 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_76583 0 0 1 0 2 TMEM145 chr19:42818498 5'GT 42818498 Upstream 72bp
chr6 158349730 158349730 1 + G A COAD 158349727 + 158349707 158349747 41 CAGGAGCACTGGAAGCGCTGCACGGGCCGTAAGTCCACTCC CAGGAGCACTGGAAGCGCTGCACAGGCCGTAAGTCCACTCC < 41bp 0.783790177899108 0.556151014894549 0.35821268 0.12935802 prediction 0.455278326009117 Functional Loss - SNX9 ENSG00000130340 CDS Human protein_coding chr6:158349727 chr6:158349730 synonymous SNV . 0 24 hm5C_associated_SNPs_76586 0 0 1 0 2 SNX9 chr6:158349631 3'AG 158349631 Downstream 100bp
chr6 158349730 158349730 1 + G A COAD 158349727 + 158349707 158349747 41 CAGGAGCACTGGAAGCGCTGCACGGGCCGTAAGTCCACTCC CAGGAGCACTGGAAGCGCTGCACAGGCCGTAAGTCCACTCC < 41bp 0.783790177899108 0.556151014894549 0.35821268 0.12935802 prediction 0.455278326009117 Functional Loss - SNX9 ENSG00000130340 CDS Human protein_coding chr6:158349727 chr6:158349730 synonymous SNV . 0 24 hm5C_associated_SNPs_76586 0 0 1 0 2 SNX9 chr6:158349734 5'GT 158349734 Upstream 5bp
chr17 30815061 30815061 1 + G T LUSC 30815059 + 30815039 30815079 41 CCTCCGCAGGGACGCCCAAACGGGTCATCGTCCAGGCGTCC CCTCCGCAGGGACGCCCAAACGTGTCATCGTCCAGGCGTCC < 41bp 0.910249696688331 0.682611857486107 0.8751857 0.27145094 prediction 0.455275678404448 Functional Loss - CDK5R1 ENSG00000176749 CDS Human protein_coding chr17:30815059 chr17:30815061 synonymous SNV . 0 23 hm5C_associated_SNPs_76587 0 0 0 0 1 CDK5R1 chr17:30815104 5'GT 30815104 Upstream 44bp
chr11 10517166 10517166 1 + G A UCEC 10517163 + 10517143 10517183 41 CAAGTACCAGTACTCAGAGCCACGGCTCTCCATCTACGGCC CAAGTACCAGTACTCAGAGCCACAGCTCTCCATCTACGGCC < 41bp 0.727637598450788 0.480822235283583 0.06245902 0.03804925 prediction 0.455275196901576 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10517163 chr11:10517166 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_76588 0 0 0 0 1 AMPD3 chr11:10517117 3'AG 10517117 Downstream 50bp
chr5 68572947 68572947 1 + G T UCEC 68572944 + 68572924 68572964 41 TGCTTCCTAGGAGGATTGCCCAAGAAACTAATTTTTTAAAG TGCTTCCTAGGAGGATTGCCCAATAAACTAATTTTTTAAAG < 41bp 0.727635767701746 0.363082916575951 0.66432524 0.29850715 prediction 0.455271535403492 Functional Loss - CDK7 ENSG00000134058 CDS Human protein_coding chr5:68572944 chr5:68572947 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_76589 0 0 1 0 1 CDK7 chr5:68572934 3'AG 68572934 Downstream 14bp
chr22 44386194 44386194 1 + G A UCEC 44386191 + 44386171 44386211 41 AAGCTGGCTGAGTGCATCCGCTGGTCGTACGGGGCCGGGAT AAGCTGGCTGAGTGCATCCGCTGATCGTACGGGGCCGGGAT < 41bp 0.785255191573698 0.557623190520041 0.1783984 0.09042585 prediction 0.455264002107315 Functional Loss - SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44386191 chr22:44386194 stopgain 0.969 1 24 hm5C_associated_SNPs_76591 0 0 1 0 2 SAMM50 chr22:44386145 3'AG 44386145 Downstream 50bp
chr22 44386194 44386194 1 + G A UCEC 44386191 + 44386171 44386211 41 AAGCTGGCTGAGTGCATCCGCTGGTCGTACGGGGCCGGGAT AAGCTGGCTGAGTGCATCCGCTGATCGTACGGGGCCGGGAT < 41bp 0.785255191573698 0.557623190520041 0.1783984 0.09042585 prediction 0.455264002107315 Functional Loss - SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44386191 chr22:44386194 stopgain 0.969 1 24 hm5C_associated_SNPs_76591 0 0 1 0 2 SAMM50 chr22:44386286 5'GT 44386286 Upstream 93bp
chr19 17450321 17450321 1 + G A COAD 17450318 + 17450298 17450338 41 GGAGACCCCAGTCGACCTGGCCGGATTTCCTGTGCTGCTGA GGAGACCCCAGTCGACCTGGCCGAATTTCCTGTGCTGCTGA < 41bp 0.727631303928236 0.478891065985973 0.4174479 0.043856382 prediction 0.455262607856472 Functional Loss - GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17450318 chr19:17450321 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_76593 0 0 1 0 1 GTPBP3 chr19:17450243 3'AG 17450243 Downstream 79bp
chr12 113873175 113873175 1 + T C STAD 113873174 + 113873154 113873194 41 TGCAGGAGCTGAAAGCAGTGCTGAGGACCCCACCAGGTGCC TGCAGGAGCTGAAAGCAGTGCCGAGGACCCCACCAGGTGCC < 41bp 0.753658750176809 0.526035638411369 0.28110108 0.34582222 prediction 0.455246223530881 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113873174 chr12:113873175 nonsynonymous SNV 0.415 5 22 hm5C_associated_SNPs_76598 0 0 0 0 1 SDSL chr12:113873134 3'AG 113873134 Downstream 42bp
chr19 42373177 42373177 1 + G T UCEC 42373175 + 42373155 42373195 41 CCAAGATCTATGGGGGACGTCAGAGAAACGGCGTCATGCCC CCAAGATCTATGGGGGACGTCATAGAAACGGCGTCATGCCC < 41bp 0.72762147935832 0.364604161090053 0.8561182 0.1619071 prediction 0.455242958716641 Functional Loss - RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373175 chr19:42373177 stopgain 1.000 2 23 hm5C_associated_SNPs_76599 0 0 1 0 1 RPS19 chr19:42373101 3'AG 42373101 Downstream 77bp
chr11 120833291 120833291 1 + G A SKCM 120833288 + 120833268 120833308 41 ATTCCAACTACGCCTTCCTCCTGGAATCCACCATGAACGAG ATTCCAACTACGCCTTCCTCCTGAAATCCACCATGAACGAG < 41bp 0.727621387571878 0.495689400383874 0.10120362 0.017040312 prediction 0.455242775143755 Functional Loss - GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120833288 chr11:120833291 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_76600 0 0 0 0 1 GRIK4 chr11:120833390 5'GT 120833390 Upstream 100bp
chr12 58002900 58002900 1 + G A HNSC 58002897 + 58002877 58002917 41 CCACCTACCTGACCCGGGTGCAAGAGGAGCTGAGAGCGAAG CCACCTACCTGACCCGGGTGCAAAAGGAGCTGAGAGCGAAG < 41bp 0.727619021222627 0.498464704352852 0.8214106 0.72475725 prediction 0.455238042445254 Functional Loss - DTX3 ENSG00000178498 CDS Human protein_coding chr12:58002897 chr12:58002900 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_76601 0 0 1 0 1 DTX3 chr12:58002860 3'AG 58002860 Downstream 41bp
chr2 128183757 128183757 1 + G A COAD 128183754 + 128183734 128183774 41 CCAAGAAGACCAAGTAGATCCGCGGCTCATTGATGGGAAGA CCAAGAAGACCAAGTAGATCCGCAGCTCATTGATGGGAAGA < 41bp 0.727618805594964 0.48465803750256 0.21702337 0.09758082 prediction 0.455237611189929 Functional Loss - PROC ENSG00000115718 CDS Human protein_coding chr2:128183754 chr2:128183757 nonsynonymous SNV 0.002 3 24 hm5C_associated_SNPs_76602 0 0 1 0 2 PROC chr2:128183661 3'AG 128183661 Downstream 97bp
chr2 128183757 128183757 1 + G A COAD 128183754 + 128183734 128183774 41 CCAAGAAGACCAAGTAGATCCGCGGCTCATTGATGGGAAGA CCAAGAAGACCAAGTAGATCCGCAGCTCATTGATGGGAAGA < 41bp 0.727618805594964 0.48465803750256 0.21702337 0.09758082 prediction 0.455237611189929 Functional Loss - PROC ENSG00000115718 CDS Human protein_coding chr2:128183754 chr2:128183757 nonsynonymous SNV 0.002 3 24 hm5C_associated_SNPs_76602 0 0 1 0 2 PROC chr2:128183803 5'GT 128183803 Upstream 47bp
chr22 30069391 30069391 1 + C T UCEC 30069389 + 30069369 30069409 41 ATCAAGGCCACAGCGATTCGCACGGAGGAGGAGAAGCGCCT ATCAAGGCCACAGCGATTCGCATGGAGGAGGAGAAGCGCCT < 41bp 0.72761659542839 0.480642770206908 0.33323407 0.5093385 prediction 0.455233190856779 Functional Loss - NF2 ENSG00000186575 CDS Human protein_coding chr22:30069389 chr22:30069391 nonsynonymous SNV 0.944 3 23 hm5C_associated_SNPs_76607 0 0 1 0 1 NF2 chr22:30069475 5'GT 30069475 Upstream 85bp
chr3 100009461 100009461 1 + G A UCEC 100009458 + 100009438 100009478 41 GGGAGACCATTTCATCTCTTCAGGTTGCTCATCCAATACCA GGGAGACCATTTCATCTCTTCAGATTGCTCATCCAATACCA < 41bp 0.727614340015634 0.488842311134164 0.06363714 0.03242463 prediction 0.455228680031267 Functional Loss - TBC1D23 ENSG00000036054 CDS Human protein_coding chr3:100009458 chr3:100009461 synonymous SNV . 0 24 hm5C_associated_SNPs_76608 0 0 1 0 2 TBC1D23 chr3:100009422 3'AG 100009422 Downstream 40bp
chr3 100009461 100009461 1 + G A UCEC 100009458 + 100009438 100009478 41 GGGAGACCATTTCATCTCTTCAGGTTGCTCATCCAATACCA GGGAGACCATTTCATCTCTTCAGATTGCTCATCCAATACCA < 41bp 0.727614340015634 0.488842311134164 0.06363714 0.03242463 prediction 0.455228680031267 Functional Loss - TBC1D23 ENSG00000036054 CDS Human protein_coding chr3:100009458 chr3:100009461 synonymous SNV . 0 24 hm5C_associated_SNPs_76608 0 0 1 0 2 TBC1D23 chr3:100009545 5'GT 100009545 Upstream 85bp
chrX 10098014 10098014 1 + G A STAD 10098011 + 10097991 10098031 41 TTCAGGAGTTGGCAAGCGGACTCGGTGGATAGCGGCTGTAG TTCAGGAGTTGGCAAGCGGACTCAGTGGATAGCGGCTGTAG < 41bp 0.779791824702785 0.552183671251751 0.14054641 0.09480536 prediction 0.455216306902067 Functional Loss - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10098011 chrX:10098014 synonymous SNV . 0 24 hm5C_associated_SNPs_76610 0 0 0 0 1 WWC3 chrX:10097996 3'AG 10097996 Downstream 19bp
chr20 60854354 60854354 1 + G A SKCM 60854351 + 60854331 60854371 41 CTCAAGTTCTGGGGCAAAAGCGTGGAGGCGGAGCCCCGAGG CTCAAGTTCTGGGGCAAAAGCGTAGAGGCGGAGCCCCGAGG < 41bp 0.807553064773365 0.579951485612092 0.83671355 0.5622683 prediction 0.455203158322546 Functional Loss - OSBPL2 ENSG00000130703 CDS Human protein_coding chr20:60854351 chr20:60854354 synonymous SNV . 0 24 hm5C_associated_SNPs_76613 0 0 1 0 2 OSBPL2 chr20:60854395 5'GT 60854395 Upstream 42bp
chr20 60854354 60854354 1 + G A SKCM 60854351 + 60854331 60854371 41 CTCAAGTTCTGGGGCAAAAGCGTGGAGGCGGAGCCCCGAGG CTCAAGTTCTGGGGCAAAAGCGTAGAGGCGGAGCCCCGAGG < 41bp 0.807553064773365 0.579951485612092 0.83671355 0.5622683 prediction 0.455203158322546 Functional Loss - OSBPL2 ENSG00000130703 CDS Human protein_coding chr20:60854351 chr20:60854354 synonymous SNV . 0 24 hm5C_associated_SNPs_76613 0 0 1 0 2 OSBPL2 chr20:60854405 5'GT 60854405 Upstream 52bp
chr19 39600718 39600718 1 + G T OV 39600716 + 39600696 39600736 41 GGGAAGATCGTAGATGATGTCTGGGTGGTGAGACCCCTGTT GGGAAGATCGTAGATGATGTCTTGGTGGTGAGACCCCTGTT < 41bp 0.894038803238806 0.666437330747825 0.55204743 0.10153365 prediction 0.455202944981961 Functional Loss - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39600716 chr19:39600718 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_76614 0 0 0 1 1 ACP7 chr19:39600693 3'AG 39600693 Downstream 26bp
chr1 116929941 116929941 1 + T C UCEC 116929940 + 116929920 116929960 41 CTGCTCGTGCAGCTGAGATCCTGGCGCGAGATGGTCCCAAC CTGCTCGTGCAGCTGAGATCCCGGCGCGAGATGGTCCCAAC < 41bp 0.782260975822356 0.554665868694029 0.66748005 0.80108726 prediction 0.455190214256655 Functional Loss - ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116929940 chr1:116929941 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_76616 0 0 1 0 1 ATP1A1 chr1:116929910 3'AG 116929910 Downstream 32bp
chr19 6750571 6750571 1 + G A LUAD 6750568 + 6750548 6750588 41 AGCCAGGACACCCCCATTTACACGGAGTTTGATGAGGATTT AGCCAGGACACCCCCATTTACACAGAGTTTGATGAGGATTT < 41bp 0.727593064263395 0.485155001602539 0.19512734 0.07862669 prediction 0.45518612852679 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6750568 chr19:6750571 synonymous SNV . 0 24 hm5C_associated_SNPs_76618 0 0 1 0 2 TRIP10 chr19:6750523 3'AG 6750523 Downstream 49bp
chr19 6750571 6750571 1 + G A LUAD 6750568 + 6750548 6750588 41 AGCCAGGACACCCCCATTTACACGGAGTTTGATGAGGATTT AGCCAGGACACCCCCATTTACACAGAGTTTGATGAGGATTT < 41bp 0.727593064263395 0.485155001602539 0.19512734 0.07862669 prediction 0.45518612852679 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6750568 chr19:6750571 synonymous SNV . 0 24 hm5C_associated_SNPs_76618 0 0 1 0 2 TRIP10 chr19:6750644 5'GT 6750644 Upstream 74bp
chr17 62079176 62079176 1 + G A UCEC 62079173 + 62079153 62079193 41 CTTCCTGCTCTGGATACAGCCCCGGAGCCGCCTCCTGCACC CTTCCTGCTCTGGATACAGCCCCAGAGCCGCCTCCTGCACC < 41bp 0.770447400271376 0.542854405661895 0.14593947 0.084986866 prediction 0.455185989218963 Functional Loss - PRR29 ENSG00000224383 CDS Human protein_coding chr17:62079173 chr17:62079176 synonymous SNV . 0 24 hm5C_associated_SNPs_76619 0 0 0 0 1 PRR29 chr17:62079093 3'AG 62079093 Downstream 84bp
chr1 40536573 40536573 1 + G T UCEC 40536570 + 40536550 40536590 41 GGCTGCCATGCTTACCTGAGCAAGAATTCCCTGGATTGTGA GGCTGCCATGCTTACCTGAGCAATAATTCCCTGGATTGTGA < 41bp 0.727588981408765 0.336831187087059 0.664689 0.2585193 prediction 0.455177962817529 Functional Loss - CAP1 ENSG00000131236 CDS Human protein_coding chr1:40536570 chr1:40536573 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_76621 0 0 1 0 2 CAP1 chr1:40536508 3'AG 40536508 Downstream 66bp
chr1 40536573 40536573 1 + G T UCEC 40536570 + 40536550 40536590 41 GGCTGCCATGCTTACCTGAGCAAGAATTCCCTGGATTGTGA GGCTGCCATGCTTACCTGAGCAATAATTCCCTGGATTGTGA < 41bp 0.727588981408765 0.336831187087059 0.664689 0.2585193 prediction 0.455177962817529 Functional Loss - CAP1 ENSG00000131236 CDS Human protein_coding chr1:40536570 chr1:40536573 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_76621 0 0 1 0 2 CAP1 chr1:40536651 5'GT 40536651 Upstream 79bp
chr16 3100028 3100028 1 + C T rs184106582 3100026 + 3100006 3100046 41 GCAGACCCAGGGACAGTGGCCACCATGCGTAAGCCCCGCTG GCAGACCCAGGGACAGTGGCCATCATGCGTAAGCCCCGCTG < 41bp 0.816707181076632 0.58912164541428 0.22086394 0.3070087 prediction 0.455171071324703 Functional Loss - MMP25 ENSG00000008516 CDS Human protein_coding chr16:3100026 chr16:3100028 nonsynonymous SNV 0.554 0 23 hm5C_associated_SNPs_76623 0 0 0 0 1 MMP25 chr16:3100010 3'AG 3100010 Downstream 19bp
chr2 29169362 29169362 1 + T C UCEC 29169361 + 29169341 29169381 41 TGAAATAGCAGATAAGGATTCTGAAGTGAGTGATTTGTTCC TGAAATAGCAGATAAGGATTCCGAAGTGAGTGATTTGTTCC < 41bp 0.753195322051258 0.525610414365619 0.17346516 0.09076807 prediction 0.455169815371278 Functional Loss - WDR43 ENSG00000163811 CDS Human protein_coding chr2:29169361 chr2:29169362 synonymous SNV . 0 22 hm5C_associated_SNPs_76624 0 0 1 0 1 WDR43 chr2:29169365 5'GT 29169365 Upstream 4bp
chr16 721776 721776 1 + G A CESC 721773 + 721753 721793 41 TGCAGAGAGTGTTTGAGAAGCACGACCAGGTGAGAGCATGG TGCAGAGAGTGTTTGAGAAGCACAACCAGGTGAGAGCATGG < 41bp 0.765416235678352 0.537833482741165 0.12068105 0.04422328 prediction 0.455165505874375 Functional Loss - RHOT2 ENSG00000140983 CDS Human protein_coding chr16:721773 chr16:721776 nonsynonymous SNV 0.861 3 24 hm5C_associated_SNPs_76625 0 0 1 0 2 RHOT2 chr16:721697 3'AG 721697 Downstream 80bp
chr16 721776 721776 1 + G A CESC 721773 + 721753 721793 41 TGCAGAGAGTGTTTGAGAAGCACGACCAGGTGAGAGCATGG TGCAGAGAGTGTTTGAGAAGCACAACCAGGTGAGAGCATGG < 41bp 0.765416235678352 0.537833482741165 0.12068105 0.04422328 prediction 0.455165505874375 Functional Loss - RHOT2 ENSG00000140983 CDS Human protein_coding chr16:721773 chr16:721776 nonsynonymous SNV 0.861 3 24 hm5C_associated_SNPs_76625 0 0 1 0 2 RHOT2 chr16:721781 5'GT 721781 Upstream 6bp
chr9 110062451 110062451 1 + T C UCEC 110062450 + 110062430 110062470 41 ACTGAAAGAGAAGATTGAATCTGAAAAGGGGAAAGATGCCT ACTGAAAGAGAAGATTGAATCCGAAAAGGGGAAAGATGCCT < 41bp 0.727580449993759 0.484329679984244 0.06001368 0.06273085 prediction 0.455160899987519 Functional Loss - RAD23B ENSG00000119318 CDS Human protein_coding chr9:110062450 chr9:110062451 synonymous SNV . 0 22 hm5C_associated_SNPs_76626 0 0 1 0 2 RAD23B chr9:110062422 3'AG 110062422 Downstream 30bp
chr9 110062451 110062451 1 + T C UCEC 110062450 + 110062430 110062470 41 ACTGAAAGAGAAGATTGAATCTGAAAAGGGGAAAGATGCCT ACTGAAAGAGAAGATTGAATCCGAAAAGGGGAAAGATGCCT < 41bp 0.727580449993759 0.484329679984244 0.06001368 0.06273085 prediction 0.455160899987519 Functional Loss - RAD23B ENSG00000119318 CDS Human protein_coding chr9:110062450 chr9:110062451 synonymous SNV . 0 22 hm5C_associated_SNPs_76626 0 0 1 0 2 RAD23B chr9:110062503 5'GT 110062503 Upstream 53bp
chr20 58348486 58348486 1 + G T OV 58348483 + 58348463 58348503 41 TTGAGGAGCTGCACAGGGCGCTGGCCACGAAGCACCGCCAG TTGAGGAGCTGCACAGGGCGCTGTCCACGAAGCACCGCCAG < 41bp 0.727576177777415 0.336307941876703 0.41971704 0.24418405 prediction 0.45515235555483 Functional Loss - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58348483 chr20:58348486 nonsynonymous SNV 0.847 3 24 hm5C_associated_SNPs_76628 0 0 0 0 1 PHACTR3 chr20:58348508 5'GT 58348508 Upstream 23bp
chr4 15683492 15683492 1 + G C rs117606668 15683488 + 15683468 15683508 41 GAGAGACCTGAGGCTTGCAGCGCTGGGCCCGGCCGGGTCGC GAGAGACCTGAGGCTTGCAGCGCTCGGCCCGGCCGGGTCGC < 41bp 0.816096858038167 0.588520684389413 0.29392642 0.15685385 prediction 0.455152347297507 Functional Loss - FAM200B ENSG00000237765 UTR5 Human protein_coding chr4:15683488 chr4:15683492 . . 0 25 hm5C_associated_SNPs_76629 0 0 1 0 1 FAM200B chr4:15683524 5'GT 15683524 Upstream 33bp
chrX 70830641 70830641 1 + G A HNSC 70830638 + 70830618 70830658 41 TGGCGGCGCTTTGCCAAGATCCAGATTGGCTTGAAAGTCTG TGGCGGCGCTTTGCCAAGATCCAAATTGGCTTGAAAGTCTG < 41bp 0.780322675089327 0.552747238803802 0.16375819 0.048548788 prediction 0.455150872571049 Functional Loss - GCNA ENSG00000147174 CDS Human protein_coding chrX:70830638 chrX:70830641 synonymous SNV . 0 24 hm5C_associated_SNPs_76630 0 0 0 0 1 GCNA chrX:70830669 5'GT 70830669 Upstream 29bp
chr20 21695215 21695215 1 + G A STAD 21695212 + 21695192 21695232 41 ACCTCCTAGGGGCAGCTCTCCCCGGACCCGAGCCCGGAGGG ACCTCCTAGGGGCAGCTCTCCCCAGACCCGAGCCCGGAGGG < 41bp 0.78134513611943 0.553771991475055 0.8765479 0.6436471 prediction 0.455146289288751 Functional Loss - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21695212 chr20:21695215 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_76632 0 0 0 0 1 PAX1 chr20:21695119 3'AG 21695119 Downstream 97bp
chr8 22107923 22107923 1 + G A UCEC 22107920 + 22107900 22107940 41 AATTGGCAGGAGCTGGTGTCCGTGGGCCTTGGAGACAGTAG AATTGGCAGGAGCTGGTGTCCGTAGGCCTTGGAGACAGTAG < 41bp 0.735473724506879 0.507903142226606 0.85031474 0.78286076 prediction 0.455141164560546 Functional Loss - POLR3D ENSG00000168495 CDS Human protein_coding chr8:22107920 chr8:22107923 synonymous SNV . 0 24 hm5C_associated_SNPs_76633 0 0 1 0 1 POLR3D chr8:22107909 3'AG 22107909 Downstream 15bp
chr11 65618318 65618318 1 + G T COAD 65618316 + 65618296 65618336 41 AGCCCTCATCACGGGCATGTCAGGGCTCAAGGTAACCCCTG AGCCCTCATCACGGGCATGTCATGGCTCAAGGTAACCCCTG < 41bp 0.912332129469083 0.68476733655126 0.91334987 0.20574519 prediction 0.455129585835645 Functional Loss - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65618316 chr11:65618318 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_76636 0 0 0 0 2 SNX32 chr11:65618222 3'AG 65618222 Downstream 97bp
chr11 65618318 65618318 1 + G T COAD 65618316 + 65618296 65618336 41 AGCCCTCATCACGGGCATGTCAGGGCTCAAGGTAACCCCTG AGCCCTCATCACGGGCATGTCATGGCTCAAGGTAACCCCTG < 41bp 0.912332129469083 0.68476733655126 0.91334987 0.20574519 prediction 0.455129585835645 Functional Loss - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65618316 chr11:65618318 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_76636 0 0 0 0 2 SNX32 chr11:65618326 5'GT 65618326 Upstream 9bp
chr19 30102791 30102791 1 + C T LUAD 30102788 + 30102768 30102808 41 GATACAGCCTTTTCCTCCCTCTCCATGAACTCTGGAAACAG GATACAGCCTTTTCCTCCCTCTCTATGAACTCTGGAAACAG < 41bp 0.727564380967133 0.485614610728202 0.9616108 0.9052672 prediction 0.455128761934266 Functional Loss - POP4 ENSG00000105171 CDS Human protein_coding chr19:30102788 chr19:30102791 nonsynonymous SNV 0.242 3 24 hm5C_associated_SNPs_76637 0 0 1 0 2 POP4 chr19:30102769 3'AG 30102769 Downstream 23bp
chr19 30102791 30102791 1 + C T LUAD 30102788 + 30102768 30102808 41 GATACAGCCTTTTCCTCCCTCTCCATGAACTCTGGAAACAG GATACAGCCTTTTCCTCCCTCTCTATGAACTCTGGAAACAG < 41bp 0.727564380967133 0.485614610728202 0.9616108 0.9052672 prediction 0.455128761934266 Functional Loss - POP4 ENSG00000105171 CDS Human protein_coding chr19:30102788 chr19:30102791 nonsynonymous SNV 0.242 3 24 hm5C_associated_SNPs_76637 0 0 1 0 2 POP4 chr19:30102846 5'GT 30102846 Upstream 56bp
chr3 12574191 12574191 1 + C T UCEC 12574189 + 12574169 12574209 41 TCTGAGTCGATGGGTTTCTTCACGAGAGAGGAGTGACCAAG TCTGAGTCGATGGGTTTCTTCATGAGAGAGGAGTGACCAAG < 41bp 0.819040316000446 0.591477141449353 0.24673912 0.3412809 prediction 0.455126349102185 Functional Loss - TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12574189 chr3:12574191 stopgain 0.991 1 23 hm5C_associated_SNPs_76638 0 0 1 0 2 TSEN2 chr3:12574161 3'AG 12574161 Downstream 31bp
chr3 12574191 12574191 1 + C T UCEC 12574189 + 12574169 12574209 41 TCTGAGTCGATGGGTTTCTTCACGAGAGAGGAGTGACCAAG TCTGAGTCGATGGGTTTCTTCATGAGAGAGGAGTGACCAAG < 41bp 0.819040316000446 0.591477141449353 0.24673912 0.3412809 prediction 0.455126349102185 Functional Loss - TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12574189 chr3:12574191 stopgain 0.991 1 23 hm5C_associated_SNPs_76638 0 0 1 0 2 TSEN2 chr3:12574272 5'GT 12574272 Upstream 82bp
chr19 19166730 19166730 1 + G T LUSC 19166727 + 19166707 19166747 41 GAAGGCACACCCGCAGAAGGCCGGCGTGCAGGTGGGCAGGG GAAGGCACACCCGCAGAAGGCCGTCGTGCAGGTGGGCAGGG < 41bp 0.727560088532711 0.335260205554485 0.48839256 0.15766409 prediction 0.455120177065422 Functional Loss - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19166727 chr19:19166730 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_76639 0 0 1 0 1 ARMC6 chr19:19166737 5'GT 19166737 Upstream 8bp
chr2 47703546 47703546 1 + T C OV 47703545 + 47703525 47703565 41 ATCAACATATATTCGACAAACTGGGGTGATAGTACTCATGG ATCAACATATATTCGACAAACCGGGGTGATAGTACTCATGG < 41bp 0.778603706039009 0.551044356339017 0.8741168 0.92844194 prediction 0.455118699399984 Functional Loss - MSH2 ENSG00000095002 CDS Human protein_coding chr2:47703545 chr2:47703546 synonymous SNV . 0 22 hm5C_associated_SNPs_76641 0 0 1 0 1 MSH2 chr2:47703506 3'AG 47703506 Downstream 41bp
chr1 55524212 55524212 1 + G A rs146960060 55524209 + 55524189 55524229 41 AGGACTGTATGGTCAGCACACTCGGGGCCTACACGGATGGC AGGACTGTATGGTCAGCACACTCAGGGCCTACACGGATGGC < 41bp 0.801980768998065 0.574421996387624 0.36332953 0.09412107 prediction 0.455117545220882 Functional Loss - PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524209 chr1:55524212 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_76642 0 0 1 0 1 PCSK9 chr1:55524172 3'AG 55524172 Downstream 41bp
chr11 57457840 57457840 1 + C T BLCA 57457837 + 57457817 57457857 41 ATGTGTGTGGCTGGCTTATTCTTCATCCCTGTAGCTGGCCT ATGTGTGTGGCTGGCTTATTCTTTATCCCTGTAGCTGGCCT < 41bp 0.734030668024365 0.506472239155409 0.20774168 0.13660946 prediction 0.455116857737912 Functional Loss - ZDHHC5 ENSG00000156599 CDS Human protein_coding chr11:57457837 chr11:57457840 synonymous SNV . 0 24 hm5C_associated_SNPs_76643 0 0 1 0 2 ZDHHC5 chr11:57457807 3'AG 57457807 Downstream 34bp
chr11 57457840 57457840 1 + C T BLCA 57457837 + 57457817 57457857 41 ATGTGTGTGGCTGGCTTATTCTTCATCCCTGTAGCTGGCCT ATGTGTGTGGCTGGCTTATTCTTTATCCCTGTAGCTGGCCT < 41bp 0.734030668024365 0.506472239155409 0.20774168 0.13660946 prediction 0.455116857737912 Functional Loss - ZDHHC5 ENSG00000156599 CDS Human protein_coding chr11:57457837 chr11:57457840 synonymous SNV . 0 24 hm5C_associated_SNPs_76643 0 0 1 0 2 ZDHHC5 chr11:57457909 5'GT 57457909 Upstream 70bp
chr9 4567711 4567711 1 + G T UCEC 4567708 + 4567688 4567728 41 AAGTGAAGCCTCCCAGCGATCCAGAGATGAACATGACAGAA AAGTGAAGCCTCCCAGCGATCCATAGATGAACATGACAGAA < 41bp 0.727555101056936 0.336105192835525 0.7500435 0.25242957 prediction 0.455110202113872 Functional Loss - SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4567708 chr9:4567711 stopgain 0.002 0 24 hm5C_associated_SNPs_76644 0 0 0 0 2 SLC1A1 chr9:4567669 3'AG 4567669 Downstream 43bp
chr9 4567711 4567711 1 + G T UCEC 4567708 + 4567688 4567728 41 AAGTGAAGCCTCCCAGCGATCCAGAGATGAACATGACAGAA AAGTGAAGCCTCCCAGCGATCCATAGATGAACATGACAGAA < 41bp 0.727555101056936 0.336105192835525 0.7500435 0.25242957 prediction 0.455110202113872 Functional Loss - SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4567708 chr9:4567711 stopgain 0.002 0 24 hm5C_associated_SNPs_76644 0 0 0 0 2 SLC1A1 chr9:4567767 5'GT 4567767 Upstream 57bp
chr19 8464942 8464942 1 + C T ACC 8464940 + 8464920 8464960 41 CGCTACCGCGCCATCACCTCCGCGTGCGTGTCGGCAGCCTG CGCTACCGCGCCATCACCTCCGTGTGCGTGTCGGCAGCCTG < 41bp 0.727553935550666 0.486646191938078 0.79840136 0.75220525 prediction 0.455107871101332 Functional Loss - RAB11B ENSG00000185236 CDS Human protein_coding chr19:8464940 chr19:8464942 nonsynonymous SNV 0.921 4 23 hm5C_associated_SNPs_76645 0 0 1 0 1 RAB11B chr19:8464942 5'GT 8464942 Upstream 1bp
chr4 52943136 52943136 1 + C T STAD 52943134 + 52943114 52943154 41 TATTCCCAGGCCCGCCTGGACGCGCAGTGCCTGCTGCGGCG TATTCCCAGGCCCGCCTGGACGTGCAGTGCCTGCTGCGGCG < 41bp 0.834637349993177 0.607085564777292 0.54185313 0.41589242 prediction 0.455103570431769 Functional Loss - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52943134 chr4:52943136 nonsynonymous SNV 0.735 4 23 hm5C_associated_SNPs_76648 0 0 1 0 1 SPATA18 chr4:52943206 5'GT 52943206 Upstream 71bp
chr12 57894252 57894252 1 + C T UCEC 57894250 + 57894230 57894270 41 CTTCTGTGGCTATGAGGAGGCTCGGGGTGACCAGTGTGACA CTTCTGTGGCTATGAGGAGGCTTGGGGTGACCAGTGTGACA < 41bp 0.833087802498077 0.605536234785023 0.65686095 0.7903522 prediction 0.455103135426109 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57894250 chr12:57894252 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_76649 0 0 1 0 1 MARS chr12:57894305 5'GT 57894305 Upstream 54bp
chr12 49937252 49937252 1 + C T COAD 49937250 + 49937230 49937270 41 CACGGGAGCCCAGTGCCGCCCGCGGCCCGCCCAGCGTCTGT CACGGGAGCCCAGTGCCGCCCGTGGCCCGCCCAGCGTCTGT < 41bp 0.727544568304543 0.476955504876622 0.10430816 0.10749793 prediction 0.455089136609086 Functional Loss - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49937250 chr12:49937252 synonymous SNV . 0 23 hm5C_associated_SNPs_76653 0 0 0 0 1 KCNH3 chr12:49937301 5'GT 49937301 Upstream 50bp
chrX 107169984 107169984 1 + G T CESC 107169982 + 107169962 107170002 41 TCCTCATGGGTCTTCTCTCGCTGCAATAGTAACTTCGTGGT TCCTCATGGGTCTTCTCTCGCTTCAATAGTAACTTCGTGGT < 41bp 0.727543983634503 0.396768842426223 0.10417217 0.036348283 prediction 0.455087967269006 Functional Loss - MID2 ENSG00000080561 CDS Human protein_coding chrX:107169982 chrX:107169984 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_76654 0 0 1 0 1 MID2 chrX:107169901 3'AG 107169901 Downstream 84bp
chr19 8464928 8464928 1 + C T CESC 8464926 + 8464906 8464946 41 CCGCTGGCCAGGAGCGCTACCGCGCCATCACCTCCGCGTGC CCGCTGGCCAGGAGCGCTACCGTGCCATCACCTCCGCGTGC < 41bp 0.787176201406348 0.559636902896204 0.370785 0.32624832 prediction 0.455078597020288 Functional Loss - RAB11B ENSG00000185236 CDS Human protein_coding chr19:8464926 chr19:8464928 synonymous SNV . 0 23 hm5C_associated_SNPs_76656 0 0 1 0 1 RAB11B chr19:8464942 5'GT 8464942 Upstream 15bp
chr14 23848307 23848307 1 + G A HNSC 23848304 + 23848284 23848324 41 CTCCTTTGCAGCTGTGACCTCCCGGGACGGAGCTGCCATTG CTCCTTTGCAGCTGTGACCTCCCAGGACGGAGCTGCCATTG < 41bp 0.784576793552269 0.557039171231494 0.16833016 0.09518486 prediction 0.45507524464155 Functional Loss - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23848304 chr14:23848307 nonsynonymous SNV 0.978 2 24 hm5C_associated_SNPs_76658 0 0 0 0 2 CMTM5 chr14:23848240 3'AG 23848240 Downstream 68bp
chr14 23848307 23848307 1 + G A HNSC 23848304 + 23848284 23848324 41 CTCCTTTGCAGCTGTGACCTCCCGGGACGGAGCTGCCATTG CTCCTTTGCAGCTGTGACCTCCCAGGACGGAGCTGCCATTG < 41bp 0.784576793552269 0.557039171231494 0.16833016 0.09518486 prediction 0.45507524464155 Functional Loss - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23848304 chr14:23848307 nonsynonymous SNV 0.978 2 24 hm5C_associated_SNPs_76658 0 0 0 0 2 CMTM5 chr14:23848332 5'GT 23848332 Upstream 26bp
chr16 72137913 72137913 1 + G A OV 72137910 + 72137890 72137930 41 TTGATCAAATACATGACTGACGGGATCCTGCTCCGAGAGTC TTGATCAAATACATGACTGACGGAATCCTGCTCCGAGAGTC < 41bp 0.736952281408199 0.509421481304996 0.65070266 0.351739 prediction 0.455061600206406 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72137910 chr16:72137913 synonymous SNV . 0 24 hm5C_associated_SNPs_76660 0 0 1 0 1 DHX38 chr16:72137845 3'AG 72137845 Downstream 69bp
chr20 44639151 44639151 1 + G A STAD 44639148 + 44639128 44639168 41 AAACTACTCGGAAGACTTGCCGCGGGCGGTGATTGACGACG AAACTACTCGGAAGACTTGCCGCAGGCGGTGATTGACGACG < 41bp 0.775685862108532 0.548158064016035 0.8724197 0.62767273 prediction 0.455055596184996 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44639148 chr20:44639151 nonsynonymous SNV 0.066 0 24 hm5C_associated_SNPs_76663 0 0 0 0 1 MMP9 chr20:44639122 3'AG 44639122 Downstream 30bp
chr8 67417762 67417762 1 + C T UCEC 67417760 + 67417740 67417780 41 CGGCCAAAGCCTCTGCCAGACCCGGTACGTGAGTCCCGGCC CGGCCAAAGCCTCTGCCAGACCTGGTACGTGAGTCCCGGCC < 41bp 0.773171910006623 0.545649496831453 0.23185301 0.25753513 prediction 0.45504482635034 Functional Loss - C8orf46 ENSG00000169085 CDS Human protein_coding chr8:67417760 chr8:67417762 synonymous SNV . 0 23 hm5C_associated_SNPs_76668 0 0 0 0 1 C8orf46 chr8:67417763 5'GT 67417763 Upstream 2bp
chr14 74516497 74516497 1 + G A rs34076068 74516494 + 74516474 74516514 41 CTTCAGAAGAAGGTAGTAAACTTGGAGACTGCTCTGAGTTA CTTCAGAAGAAGGTAGTAAACTTAGAGACTGCTCTGAGTTA < 41bp 0.735917337250939 0.508396403606352 0.66409755 0.3471141 prediction 0.455041867289175 Functional Loss - BBOF1 ENSG00000119636 CDS Human protein_coding chr14:74516494 chr14:74516497 synonymous SNV . 0 24 hm5C_associated_SNPs_76670 0 0 0 0 1 BBOF1 chr14:74516405 3'AG 74516405 Downstream 93bp
chr15 28632793 28632793 1 + G A UCEC 28632790 + 28632770 28632810 41 CAGTGAGGGGGAGGAGGCACCTCGGCCCATTCCTAGCATCC CAGTGAGGGGGAGGAGGCACCTCAGCCCATTCCTAGCATCC < 41bp 0.778621985524351 0.55110306776113 0.8261334 0.66424966 prediction 0.455037835526443 Functional Loss - GOLGA8F;GOLGA8G ENSG00000153684 CDS Human protein_coding chr15:28632790 chr15:28632793 nonsynonymous SNV 0.020 0 24 hm5C_associated_SNPs_76673 0 0 0 0 1 GOLGA8F;GOLGA8G chr15:28632748 3'AG 28632748 Downstream 46bp
chr19 16625353 16625353 1 + T C STAD 16625352 + 16625332 16625372 41 TGCTGGCACTCCATGATGTGCTGAAGCAGCAGCTGAGCCTG TGCTGGCACTCCATGATGTGCCGAAGCAGCAGCTGAGCCTG < 41bp 0.793538172477652 0.566021751929827 0.3063128 0.19679731 prediction 0.455032841095651 Functional Loss - C19orf44 ENSG00000105072 CDS Human protein_coding chr19:16625352 chr19:16625353 nonsynonymous SNV 0.974 4 22 hm5C_associated_SNPs_76675 0 0 0 0 1 C19orf44 chr19:16625308 3'AG 16625308 Downstream 46bp
chr15 60678259 60678259 1 - C T COAD 60678262 - 60678242 60678282 41 CCTTCAAAATGTCTACTGTTCACGAAATCCTGTGCAAGCTC CCTTCAAAATGTCTACTGTTCACAAAATCCTGTGCAAGCTC < 41bp 0.741367779942925 0.513852700415628 0.16153765 0.06372723 prediction 0.455030159054595 Functional Loss - ANXA2 ENSG00000182718 CDS Human protein_coding chr15:60678262 chr15:60678259 nonsynonymous SNV 0.983 1 24 hm5C_associated_SNPs_76676 0 0 1 0 2 ANXA2 chr15:60678227 5'GT 60678227 Upstream 33bp
chr15 60678259 60678259 1 - C T COAD 60678262 - 60678242 60678282 41 CCTTCAAAATGTCTACTGTTCACGAAATCCTGTGCAAGCTC CCTTCAAAATGTCTACTGTTCACAAAATCCTGTGCAAGCTC < 41bp 0.741367779942925 0.513852700415628 0.16153765 0.06372723 prediction 0.455030159054595 Functional Loss - ANXA2 ENSG00000182718 CDS Human protein_coding chr15:60678262 chr15:60678259 nonsynonymous SNV 0.983 1 24 hm5C_associated_SNPs_76676 0 0 1 0 2 ANXA2 chr15:60678285 3'AG 60678285 Downstream 27bp
chr10 12142227 12142227 1 + G A UCEC 12142224 + 12142204 12142244 41 ATCAAGCTAGACTGGGCCACCGCGGAAGCTCTTGCCTTGGG ATCAAGCTAGACTGGGCCACCGCAGAAGCTCTTGCCTTGGG < 41bp 0.772007660508423 0.544492646914331 0.82941186 0.6721653 prediction 0.455030027188182 Functional Loss - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12142224 chr10:12142227 synonymous SNV . 0 24 hm5C_associated_SNPs_76677 0 0 0 0 2 DHTKD1 chr10:12142177 3'AG 12142177 Downstream 51bp
chr10 12142227 12142227 1 + G A UCEC 12142224 + 12142204 12142244 41 ATCAAGCTAGACTGGGCCACCGCGGAAGCTCTTGCCTTGGG ATCAAGCTAGACTGGGCCACCGCAGAAGCTCTTGCCTTGGG < 41bp 0.772007660508423 0.544492646914331 0.82941186 0.6721653 prediction 0.455030027188182 Functional Loss - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12142224 chr10:12142227 synonymous SNV . 0 24 hm5C_associated_SNPs_76677 0 0 0 0 2 DHTKD1 chr10:12142261 5'GT 12142261 Upstream 35bp
chr14 74727362 74727362 1 + G A UCEC 74727359 + 74727339 74727379 41 GGAAGCCCGAGGGGGAACGCCAGGCCCTGCCCAAGCTCGAC GGAAGCCCGAGGGGGAACGCCAGACCCTGCCCAAGCTCGAC < 41bp 0.762829271671626 0.535315664864238 0.87190914 0.7930193 prediction 0.455027213614776 Functional Loss - VSX2 ENSG00000119614 CDS Human protein_coding chr14:74727359 chr14:74727362 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_76678 0 0 0 0 1 VSX2 chr14:74727297 3'AG 74727297 Downstream 66bp
chr11 64329831 64329831 1 + G A COAD 64329828 + 64329808 64329848 41 GCCAGGCGGCGCTGGGCGGCCTGGCCTTTGCCCTGCGGGAC GCCAGGCGGCGCTGGGCGGCCTGACCTTTGCCCTGCGGGAC < 41bp 0.727513546724912 0.472543928752327 0.7261752 0.36311692 prediction 0.455027093449823 Functional Loss - SLC22A11 ENSG00000168065 CDS Human protein_coding chr11:64329828 chr11:64329831 nonsynonymous SNV 0.328 3 24 hm5C_associated_SNPs_76679 0 0 0 0 2 SLC22A11 chr11:64329739 3'AG 64329739 Downstream 93bp
chr11 64329831 64329831 1 + G A COAD 64329828 + 64329808 64329848 41 GCCAGGCGGCGCTGGGCGGCCTGGCCTTTGCCCTGCGGGAC GCCAGGCGGCGCTGGGCGGCCTGACCTTTGCCCTGCGGGAC < 41bp 0.727513546724912 0.472543928752327 0.7261752 0.36311692 prediction 0.455027093449823 Functional Loss - SLC22A11 ENSG00000168065 CDS Human protein_coding chr11:64329828 chr11:64329831 nonsynonymous SNV 0.328 3 24 hm5C_associated_SNPs_76679 0 0 0 0 2 SLC22A11 chr11:64329907 5'GT 64329907 Upstream 77bp
chr1 45191012 45191012 1 + G C CESC 45191011 + 45190991 45191031 41 CATGAACACTCTCTATGGCTCGCGCGATTCGGCTCAGATGG CATGAACACTCTCTATGGCTCCCGCGATTCGGCTCAGATGG < 41bp 0.727510229832673 0.41415992971761 0.107794255 0.03807324 prediction 0.455020459665346 Functional Loss - C1orf228 ENSG00000198520 CDS Human protein_coding chr1:45191011 chr1:45191012 synonymous SNV . 0 22 hm5C_associated_SNPs_76687 0 0 0 0 1 C1orf228 chr1:45190963 3'AG 45190963 Downstream 50bp
chr7 101944465 101944465 1 + G T LUSC 101944463 + 101944443 101944483 41 GGTGGCCGACGACGCGGCCGCGGGCTCCGGGGGCTCGGCTC GGTGGCCGACGACGCGGCCGCGTGCTCCGGGGGCTCGGCTC < 41bp 0.900787981723056 0.673281767443738 0.92256886 0.8197667 prediction 0.455012428558637 Functional Loss - SH2B2 ENSG00000160999 CDS Human protein_coding chr7:101944463 chr7:101944465 nonsynonymous SNV 0.006 3 23 hm5C_associated_SNPs_76688 0 0 0 0 1 SH2B2 chr7:101944563 5'GT 101944563 Upstream 99bp
chrX 12809648 12809648 1 + C T STAD 12809646 + 12809626 12809666 41 ATCGTGCTGTTCAGCGGCAGCTCGCATCAGGACCTGTCCCA ATCGTGCTGTTCAGCGGCAGCTTGCATCAGGACCTGTCCCA < 41bp 0.79599995112849 0.568494705552508 0.24950337 0.35137933 prediction 0.455010491151964 Functional Loss - PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12809646 chrX:12809648 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_76690 0 0 1 0 1 PRPS2 chrX:12809738 5'GT 12809738 Upstream 91bp
chr19 5119803 5119803 1 + G A CESC 5119800 + 5119780 5119820 41 AGGCTGGGCCGGAGGTTGACCCCGAGGAGGAGGAGGAGGAG AGGCTGGGCCGGAGGTTGACCCCAAGGAGGAGGAGGAGGAG < 41bp 0.7275031189545 0.47684095289067 0.36251813 0.21631116 prediction 0.455006237909 Functional Loss - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5119800 chr19:5119803 nonsynonymous SNV 0.905 0 24 hm5C_associated_SNPs_76693 0 0 1 0 1 KDM4B chr19:5119863 5'GT 5119863 Upstream 61bp
chr11 66838982 66838982 1 + C T STAD 66838980 + 66838960 66839000 41 CGGCTCCATGACAACGTCCACGCCGTCTTCCAGGAGGCCGC CGGCTCCATGACAACGTCCACGTCGTCTTCCAGGAGGCCGC < 41bp 0.727501862315177 0.485414528058744 0.11066902 0.056066036 prediction 0.455003724630354 Functional Loss - RHOD ENSG00000173156 CDS Human protein_coding chr11:66838980 chr11:66838982 nonsynonymous SNV 0.884 0 23 hm5C_associated_SNPs_76694 0 0 0 0 1 RHOD chr11:66838906 3'AG 66838906 Downstream 77bp
chr15 76463419 76463419 1 + C T SKCM 76463417 + 76463397 76463437 41 GGACCCAGGAGCCCCTGGGACGCCATCAGCCTCATCATCAT GGACCCAGGAGCCCCTGGGACGTCATCAGCCTCATCATCAT < 41bp 0.847419981845396 0.619919733768446 0.188939 0.06377375 prediction 0.455000496153902 Functional Loss - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76463417 chr15:76463419 nonsynonymous SNV 0.990 4 23 hm5C_associated_SNPs_76696 0 0 0 0 2 TMEM266 chr15:76463334 3'AG 76463334 Downstream 86bp
chr15 76463419 76463419 1 + C T SKCM 76463417 + 76463397 76463437 41 GGACCCAGGAGCCCCTGGGACGCCATCAGCCTCATCATCAT GGACCCAGGAGCCCCTGGGACGTCATCAGCCTCATCATCAT < 41bp 0.847419981845396 0.619919733768446 0.188939 0.06377375 prediction 0.455000496153902 Functional Loss - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76463417 chr15:76463419 nonsynonymous SNV 0.990 4 23 hm5C_associated_SNPs_76696 0 0 0 0 2 TMEM266 chr15:76463472 5'GT 76463472 Upstream 54bp
chr2 198318354 198318354 1 + G T SARC 198318352 + 198318332 198318372 41 ATGCCGTCCGAAGTCGGCGACAGCGGCCGGGGCGCAGGCGC ATGCCGTCCGAAGTCGGCGACATCGGCCGGGGCGCAGGCGC < 41bp 0.909675404936637 0.682179359790288 0.7604878 0.45589387 prediction 0.454992090292699 Functional Loss - COQ10B ENSG00000115520 CDS Human protein_coding chr2:198318352 chr2:198318354 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_76701 0 0 1 0 1 COQ10B chr2:198318388 5'GT 198318388 Upstream 35bp
chr19 15163075 15163075 1 + C T rs77227419 15163073 + 15163053 15163093 41 CAAAGGAGAAATGAGCAATCCGCGGTCTTTGGAAGAGGTAG CAAAGGAGAAATGAGCAATCCGTGGTCTTTGGAAGAGGTAG < 41bp 0.792014885905573 0.56452277488315 0.85896885 0.5586905 prediction 0.454984222044846 Functional Loss - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15163073 chr19:15163075 nonsynonymous SNV 0.034 1 23 hm5C_associated_SNPs_76703 0 0 0 0 2 CASP14 chr19:15163017 3'AG 15163017 Downstream 59bp
chr19 15163075 15163075 1 + C T rs77227419 15163073 + 15163053 15163093 41 CAAAGGAGAAATGAGCAATCCGCGGTCTTTGGAAGAGGTAG CAAAGGAGAAATGAGCAATCCGTGGTCTTTGGAAGAGGTAG < 41bp 0.792014885905573 0.56452277488315 0.85896885 0.5586905 prediction 0.454984222044846 Functional Loss - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15163073 chr19:15163075 nonsynonymous SNV 0.034 1 23 hm5C_associated_SNPs_76703 0 0 0 0 2 CASP14 chr19:15163089 5'GT 15163089 Upstream 15bp
chr19 53008024 53008024 1 + G T LUAD 53008022 + 53008002 53008042 41 TGTTGGAGAACTACAGGAACCTGGAGGCTGTGGGTGAGGAA TGTTGGAGAACTACAGGAACCTTGAGGCTGTGGGTGAGGAA < 41bp 0.898737998532962 0.671245934250908 0.8490041 0.4452897 prediction 0.454984128564109 Functional Loss - ZNF578 ENSG00000258405 CDS Human protein_coding chr19:53008022 chr19:53008024 synonymous SNV . 0 23 hm5C_associated_SNPs_76704 0 0 0 0 1 ZNF578 chr19:53008034 5'GT 53008034 Upstream 11bp
chr2 206659538 206659538 1 + C T STAD 206659536 + 206659516 206659556 41 ACCTCAGGGTCTGGCGCCCCCTCGACCGACAAAGAAAAGAG ACCTCAGGGTCTGGCGCCCCCTTGACCGACAAAGAAAAGAG < 41bp 0.834147278053396 0.606658354336656 0.27152175 0.059437424 prediction 0.454977847433479 Functional Loss - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206659536 chr2:206659538 nonsynonymous SNV 0.005 1 23 hm5C_associated_SNPs_76706 0 0 0 0 1 NRP2 chr2:206659478 3'AG 206659478 Downstream 61bp
chr11 118849735 118849735 1 + G T LUAD 118849732 + 118849712 118849752 41 TTGTGTATCCCCCTGGAAAGCTGGAGGTCTCAGGACGTAGG TTGTGTATCCCCCTGGAAAGCTGTAGGTCTCAGGACGTAGG < 41bp 0.928456717870855 0.700971400051319 0.33348653 0.058697253 prediction 0.454970635639073 Functional Loss - FOXR1 ENSG00000176302 CDS Human protein_coding chr11:118849732 chr11:118849735 stopgain 0.984 0 24 hm5C_associated_SNPs_76710 0 0 0 0 1 FOXR1 chr11:118849667 3'AG 118849667 Downstream 69bp
chr19 41630629 41630629 1 + G A rs182353952 41630626 + 41630606 41630646 41 TTCCCGCTTCCTCTCCAGCCCGCGTGCAGGAGGAGATCGAC TTCCCGCTTCCTCTCCAGCCCGCATGCAGGAGGAGATCGAC < 41bp 0.752549179167946 0.525065155079564 0.3551116 0.06393194 prediction 0.454968048176765 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41630626 chr19:41630629 nonsynonymous SNV 0.847 1 24 hm5C_associated_SNPs_76711 0 0 0 0 1 CYP2F1 chr19:41630624 3'AG 41630624 Downstream 6bp
chr16 68961558 68961558 1 + G A LUAD 68961555 + 68961535 68961575 41 CATACCCTGATCCGGTCATCCAAGAACTCGCTGTTGATCTC CATACCCTGATCCGGTCATCCAAAAACTCGCTGTTGATCTC < 41bp 0.754931979314011 0.527448150912385 0.17705315 0.06312242 prediction 0.454967656803253 Functional Loss - TANGO6 ENSG00000103047 CDS Human protein_coding chr16:68961555 chr16:68961558 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_76712 0 0 1 0 1 TANGO6 chr16:68961471 3'AG 68961471 Downstream 88bp
chr1 236702362 236702362 1 + G A UCEC 236702359 + 236702339 236702379 41 AGAGAAAAGTCTTTTGAGATCGTGATTATGGTGCTGAAGGA AGAGAAAAGTCTTTTGAGATCGTAATTATGGTGCTGAAGGA < 41bp 0.748257956683906 0.520776610445082 0.2119512 0.08182874 prediction 0.454962692477648 Functional Loss - LGALS8 ENSG00000116977 CDS Human protein_coding chr1:236702359 chr1:236702362 synonymous SNV . 0 24 hm5C_associated_SNPs_76715 0 0 1 3 1 LGALS8 chr1:236702389 5'GT 236702389 Upstream 28bp
chr19 51920436 51920436 1 + G A UCEC 51920433 + 51920413 51920453 41 TGTGACTCATCCTGCATCTGCGCGTCTCTGATCACCAAGGA TGTGACTCATCCTGCATCTGCGCATCTCTGATCACCAAGGA < 41bp 0.782794097324993 0.555319065314026 0.06621665 0.06654194 prediction 0.454950064021936 Functional Loss - SIGLEC10 ENSG00000142512 CDS Human protein_coding chr19:51920433 chr19:51920436 synonymous SNV . 0 24 hm5C_associated_SNPs_76722 0 0 1 0 1 LOC100129083;SIGLEC10 chr19:51920386 3'AG 51920386 Downstream 51bp
chr5 10442330 10442330 1 + G A STAD 10442327 + 10442307 10442347 41 GCTCAGCAGATCCACATTCCCCCGGAGCTGCCGGACATCCT GCTCAGCAGATCCACATTCCCCCAGAGCTGCCGGACATCCT < 41bp 0.753934172830603 0.526459852427434 0.2198059 0.17962995 prediction 0.454948640806339 Functional Loss - ROPN1L ENSG00000145491 CDS Human protein_coding chr5:10442327 chr5:10442330 synonymous SNV . 0 24 hm5C_associated_SNPs_76723 0 0 0 0 2 ROPN1L chr5:10442239 3'AG 10442239 Downstream 92bp
chr5 10442330 10442330 1 + G A STAD 10442327 + 10442307 10442347 41 GCTCAGCAGATCCACATTCCCCCGGAGCTGCCGGACATCCT GCTCAGCAGATCCACATTCCCCCAGAGCTGCCGGACATCCT < 41bp 0.753934172830603 0.526459852427434 0.2198059 0.17962995 prediction 0.454948640806339 Functional Loss - ROPN1L ENSG00000145491 CDS Human protein_coding chr5:10442327 chr5:10442330 synonymous SNV . 0 24 hm5C_associated_SNPs_76723 0 0 0 0 2 ROPN1L chr5:10442410 5'GT 10442410 Upstream 81bp
chr11 64137029 64137029 1 + G A BRCA 64137026 + 64137006 64137046 41 CAAGCCAGATCCTGCGCAGCCTCGTGTCGGCCGTGAGCTTC CAAGCCAGATCCTGCGCAGCCTCATGTCGGCCGTGAGCTTC < 41bp 0.758367595747549 0.530895457419812 0.026677787 0.0257819 prediction 0.454944276655473 Functional Loss - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137026 chr11:64137029 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_76726 0 0 0 0 1 RPS6KA4 chr11:64137091 5'GT 64137091 Upstream 63bp
chr19 49979420 49979420 1 + G T UCEC 49979417 + 49979397 49979437 41 CGCAGTCTGACTACCTGCTTCAAGATTACCCAGTCACCGTG CGCAGTCTGACTACCTGCTTCAATATTACCCAGTCACCGTG < 41bp 0.727469717456499 0.407279918398171 0.256369 0.0693447 prediction 0.454939434912999 Functional Loss - FLT3LG ENSG00000090554 CDS Human protein_coding chr19:49979417 chr19:49979420 nonsynonymous SNV 0.627 2 24 hm5C_associated_SNPs_76728 0 0 1 0 3 FLT3LG chr19:49979374 3'AG 49979374 Downstream 47bp
chr19 49979420 49979420 1 + G T UCEC 49979417 + 49979397 49979437 41 CGCAGTCTGACTACCTGCTTCAAGATTACCCAGTCACCGTG CGCAGTCTGACTACCTGCTTCAATATTACCCAGTCACCGTG < 41bp 0.727469717456499 0.407279918398171 0.256369 0.0693447 prediction 0.454939434912999 Functional Loss - FLT3LG ENSG00000090554 CDS Human protein_coding chr19:49979417 chr19:49979420 nonsynonymous SNV 0.627 2 24 hm5C_associated_SNPs_76728 0 0 1 0 3 FLT3LG chr19:49979402 3'AG 49979402 Downstream 19bp
chr19 49979420 49979420 1 + G T UCEC 49979417 + 49979397 49979437 41 CGCAGTCTGACTACCTGCTTCAAGATTACCCAGTCACCGTG CGCAGTCTGACTACCTGCTTCAATATTACCCAGTCACCGTG < 41bp 0.727469717456499 0.407279918398171 0.256369 0.0693447 prediction 0.454939434912999 Functional Loss - FLT3LG ENSG00000090554 CDS Human protein_coding chr19:49979417 chr19:49979420 nonsynonymous SNV 0.627 2 24 hm5C_associated_SNPs_76728 0 0 1 0 3 FLT3LG chr19:49979455 5'GT 49979455 Upstream 36bp
chr1 213415603 213415603 1 + C T BLCA 213415601 + 213415581 213415621 41 ATAGAGAGGGAATTGTGTGCCGCGATTTGAACCCAAACAAC ATAGAGAGGGAATTGTGTGCCGTGATTTGAACCCAAACAAC < 41bp 0.8216577441245 0.594192036523648 0.16651085 0.15554726 prediction 0.454931415201703 Functional Loss - RPS6KC1 ENSG00000136643 CDS Human protein_coding chr1:213415601 chr1:213415603 synonymous SNV . 0 23 hm5C_associated_SNPs_76729 0 0 1 0 1 RPS6KC1 chr1:213415640 5'GT 213415640 Upstream 38bp
chr14 24523678 24523678 1 + G A UCEC 24523675 + 24523655 24523695 41 TGAAAGTGTGGACCAGGTGACACGACATGTGAGCTCTGCCC TGAAAGTGTGGACCAGGTGACACAACATGTGAGCTCTGCCC < 41bp 0.769615871203843 0.5421547862387 0.24342 0.2149995 prediction 0.454922169930285 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24523675 chr14:24523678 nonsynonymous SNV 0.989 1 24 hm5C_associated_SNPs_76731 0 0 0 0 2 CARMIL3 chr14:24523605 3'AG 24523605 Downstream 74bp
chr14 24523678 24523678 1 + G A UCEC 24523675 + 24523655 24523695 41 TGAAAGTGTGGACCAGGTGACACGACATGTGAGCTCTGCCC TGAAAGTGTGGACCAGGTGACACAACATGTGAGCTCTGCCC < 41bp 0.769615871203843 0.5421547862387 0.24342 0.2149995 prediction 0.454922169930285 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24523675 chr14:24523678 nonsynonymous SNV 0.989 1 24 hm5C_associated_SNPs_76731 0 0 0 0 2 CARMIL3 chr14:24523720 5'GT 24523720 Upstream 43bp
chr3 47385140 47385140 1 + G T UCEC 47385137 + 47385117 47385157 41 GGAGCCGCCTCCCTGGGGAGCAAGATGTTTGTCTGCGGGGG GGAGCCGCCTCCCTGGGGAGCAATATGTTTGTCTGCGGGGG < 41bp 0.727460171036567 0.332061627454223 0.82578325 0.25687116 prediction 0.454920342073134 Functional Loss - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47385137 chr3:47385140 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_76732 0 0 1 0 1 KLHL18 chr3:47385045 3'AG 47385045 Downstream 96bp
chr11 68675672 68675672 1 + T C SKCM 68675671 + 68675651 68675691 41 AGTCAGCTGGCCACTGGGATCTTGACCCGGGTCACCCAGAA AGTCAGCTGGCCACTGGGATCCTGACCCGGGTCACCCAGAA < 41bp 0.727450891117548 0.465551785199307 0.4634337 0.47155714 prediction 0.454901782235096 Functional Loss - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68675671 chr11:68675672 synonymous SNV . 0 22 hm5C_associated_SNPs_76736 0 0 1 0 1 IGHMBP2 chr11:68675613 3'AG 68675613 Downstream 60bp
chr16 28884863 28884863 1 + G A BLCA 28884860 + 28884840 28884880 41 CAGAAGAGGCGTCGAGGGCGCCAGAAGTGGCGGCAGCAGCA CAGAAGAGGCGTCGAGGGCGCCAAAAGTGGCGGCAGCAGCA < 41bp 0.737566267185384 0.510119735709269 0.9054259 0.83290327 prediction 0.45489306295223 Functional Loss - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28884860 chr16:28884863 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_76737 0 0 1 0 1 SH2B1 chr16:28884768 3'AG 28884768 Downstream 96bp
chr3 9490114 9490114 1 + G A SKCM 9490111 + 9490091 9490131 41 TGAATGACAAAGCAGAGAAGCAAGAGTGCCCTGTTGAGTGC TGAATGACAAAGCAGAGAAGCAAAAGTGCCCTGTTGAGTGC < 41bp 0.735233203383866 0.507788242095234 0.8489461 0.31633335 prediction 0.454889922577264 Functional Loss - SETD5 ENSG00000168137 CDS Human protein_coding chr3:9490111 chr3:9490114 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_76738 0 0 1 0 1 SETD5 chr3:9490072 3'AG 9490072 Downstream 43bp
chr8 38948831 38948831 1 + G T CESC 38948828 + 38948808 38948848 41 TAGACAGCCGGGGAGTGTTCCTCGACATGTTTCTCCAGTGA TAGACAGCCGGGGAGTGTTCCTCTACATGTTTCTCCAGTGA < 41bp 0.727435679102471 0.350160653401408 0.24901524 0.8572643 prediction 0.454871358204941 Functional Loss - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38948828 chr8:38948831 nonsynonymous SNV 0.172 1 24 hm5C_associated_SNPs_76745 0 0 1 0 2 ADAM9 chr8:38948778 3'AG 38948778 Downstream 54bp
chr8 38948831 38948831 1 + G T CESC 38948828 + 38948808 38948848 41 TAGACAGCCGGGGAGTGTTCCTCGACATGTTTCTCCAGTGA TAGACAGCCGGGGAGTGTTCCTCTACATGTTTCTCCAGTGA < 41bp 0.727435679102471 0.350160653401408 0.24901524 0.8572643 prediction 0.454871358204941 Functional Loss - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38948828 chr8:38948831 nonsynonymous SNV 0.172 1 24 hm5C_associated_SNPs_76745 0 0 1 0 2 ADAM9 chr8:38948865 5'GT 38948865 Upstream 35bp
chr8 38948830 38948830 1 + C T UCEC 38948828 + 38948808 38948848 41 TAGACAGCCGGGGAGTGTTCCTCGACATGTTTCTCCAGTGA TAGACAGCCGGGGAGTGTTCCTTGACATGTTTCTCCAGTGA < 41bp 0.727435679102471 0.425630944635832 0.24901524 0.033205688 prediction 0.454871358204941 Functional Loss - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38948828 chr8:38948830 stopgain 0.223 0 23 hm5C_associated_SNPs_76746 0 0 1 0 2 ADAM9 chr8:38948778 3'AG 38948778 Downstream 53bp
chr8 38948830 38948830 1 + C T UCEC 38948828 + 38948808 38948848 41 TAGACAGCCGGGGAGTGTTCCTCGACATGTTTCTCCAGTGA TAGACAGCCGGGGAGTGTTCCTTGACATGTTTCTCCAGTGA < 41bp 0.727435679102471 0.425630944635832 0.24901524 0.033205688 prediction 0.454871358204941 Functional Loss - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38948828 chr8:38948830 stopgain 0.223 0 23 hm5C_associated_SNPs_76746 0 0 1 0 2 ADAM9 chr8:38948865 5'GT 38948865 Upstream 36bp
chr10 27009216 27009216 1 + C T SKCM 27009214 + 27009194 27009234 41 TCCACACTGCTAGTCTGGTTCACGATGACGTTATTGACGAT TCCACACTGCTAGTCTGGTTCATGATGACGTTATTGACGAT < 41bp 0.858205808690687 0.630774504149964 0.20875591 0.23029849 prediction 0.454862609081446 Functional Loss - PDSS1 ENSG00000148459 CDS Human protein_coding chr10:27009214 chr10:27009216 synonymous SNV . 0 23 hm5C_associated_SNPs_76748 0 0 0 0 2 PDSS1 chr10:27009147 3'AG 27009147 Downstream 70bp
chr10 27009216 27009216 1 + C T SKCM 27009214 + 27009194 27009234 41 TCCACACTGCTAGTCTGGTTCACGATGACGTTATTGACGAT TCCACACTGCTAGTCTGGTTCATGATGACGTTATTGACGAT < 41bp 0.858205808690687 0.630774504149964 0.20875591 0.23029849 prediction 0.454862609081446 Functional Loss - PDSS1 ENSG00000148459 CDS Human protein_coding chr10:27009214 chr10:27009216 synonymous SNV . 0 23 hm5C_associated_SNPs_76748 0 0 0 0 2 PDSS1 chr10:27009288 5'GT 27009288 Upstream 73bp
chr7 872217 872217 1 + C T STAD 872215 + 872195 872235 41 CCCCAGTGTGTGCCGGAGAACACGGGCTACACGTATGCGCT CCCCAGTGTGTGCCGGAGAACATGGGCTACACGTATGCGCT < 41bp 0.784340050242037 0.556908914496607 0.6922128 0.43708205 prediction 0.454862271490861 Functional Loss - SUN1 ENSG00000164828 CDS Human protein_coding chr7:872215 chr7:872217 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_76749 0 0 1 0 1 SUN1 chr7:872238 5'GT 872238 Upstream 22bp
chr19 54656670 54656670 1 + G A UCEC 54656667 + 54656647 54656687 41 CACCAGATGCCACCCCCACACTCGGACACTGTGGAATTCTA CACCAGATGCCACCCCCACACTCAGACACTGTGGAATTCTA < 41bp 0.741835582919127 0.514407951509711 0.099743634 0.093602866 prediction 0.454855262818832 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54656667 chr19:54656670 synonymous SNV . 0 24 hm5C_associated_SNPs_76750 0 0 1 0 3 CNOT3 chr19:54656604 3'AG 54656604 Downstream 67bp
chr19 54656670 54656670 1 + G A UCEC 54656667 + 54656647 54656687 41 CACCAGATGCCACCCCCACACTCGGACACTGTGGAATTCTA CACCAGATGCCACCCCCACACTCAGACACTGTGGAATTCTA < 41bp 0.741835582919127 0.514407951509711 0.099743634 0.093602866 prediction 0.454855262818832 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54656667 chr19:54656670 synonymous SNV . 0 24 hm5C_associated_SNPs_76750 0 0 1 0 3 CNOT3 chr19:54656608 3'AG 54656608 Downstream 63bp
chr19 54656670 54656670 1 + G A UCEC 54656667 + 54656647 54656687 41 CACCAGATGCCACCCCCACACTCGGACACTGTGGAATTCTA CACCAGATGCCACCCCCACACTCAGACACTGTGGAATTCTA < 41bp 0.741835582919127 0.514407951509711 0.099743634 0.093602866 prediction 0.454855262818832 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54656667 chr19:54656670 synonymous SNV . 0 24 hm5C_associated_SNPs_76750 0 0 1 0 3 CNOT3 chr19:54656736 5'GT 54656736 Upstream 67bp
chr3 155838592 155838592 1 + C T COAD 155838590 + 155838570 155838610 41 CGCGTCAACTGGCTCTGCTGCGCGAAGTGGAGATGAACTGG CGCGTCAACTGGCTCTGCTGCGTGAAGTGGAGATGAACTGG < 41bp 0.79592332425907 0.568496736082018 0.38943166 0.4254231 prediction 0.454853176354104 Functional Loss - KCNAB1 ENSG00000169282 CDS Human protein_coding chr3:155838590 chr3:155838592 synonymous SNV . 0 23 hm5C_associated_SNPs_76751 0 0 0 0 1 KCNAB1 chr3:155838675 5'GT 155838675 Upstream 84bp
chr19 5133912 5133912 1 + G A SKCM 5133909 + 5133889 5133929 41 TCTAGAGGCATCCCCTTTCTCCGGGGAGGAAGATGTGAGTG TCTAGAGGCATCCCCTTTCTCCGAGGAGGAAGATGTGAGTG < 41bp 0.727422146964305 0.479932491372583 0.92432284 0.89571565 prediction 0.45484429392861 Functional Loss - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5133909 chr19:5133912 nonsynonymous SNV 0.358 2 24 hm5C_associated_SNPs_76753 0 0 1 0 1 KDM4B chr19:5133894 3'AG 5133894 Downstream 19bp
chr15 98513938 98513938 1 + G T UCEC 98513935 + 98513915 98513955 41 GTCCTGTGTTTGCCTGTATACAAGAATTCCGGTTTCAACCC GTCCTGTGTTTGCCTGTATACAATAATTCCGGTTTCAACCC < 41bp 0.924536283061623 0.69711487288035 0.2772003 0.10802585 prediction 0.454842820362546 Functional Loss - ARRDC4 ENSG00000140450 CDS Human protein_coding chr15:98513935 chr15:98513938 stopgain 0.913 1 24 hm5C_associated_SNPs_76754 0 0 1 0 1 ARRDC4 chr15:98513973 5'GT 98513973 Upstream 36bp
chrX 22117147 22117147 1 + G T UCEC 22117144 + 22117124 22117164 41 TTCGACTGGCTGGGCTACATCAAGAAGGTCATTGACACCAG TTCGACTGGCTGGGCTACATCAATAAGGTCATTGACACCAG < 41bp 0.927946678666397 0.700530217448297 0.79341906 0.2523253 prediction 0.454832922436201 Functional Loss - PHEX ENSG00000102174 CDS Human protein_coding chrX:22117144 chrX:22117147 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_76756 0 0 0 0 1 PHEX chrX:22117124 3'AG 22117124 Downstream 24bp
chr15 42841088 42841088 1 + G A rs542482693 42841085 + 42841065 42841105 41 CGAGCCATGGCCGCTGCCAACCCGTGGGACCCGGCGTCCGC CGAGCCATGGCCGCTGCCAACCCATGGGACCCGGCGTCCGC < 41bp 0.771372260876376 0.543961285898217 0.3088262 0.09711805 prediction 0.454821949956319 Functional Loss - HAUS2 ENSG00000137814 CDS Human protein_coding chr15:42841085 chr15:42841088 synonymous SNV . 0 24 hm5C_associated_SNPs_76759 0 0 1 0 1 HAUS2 chr15:42841163 5'GT 42841163 Upstream 76bp
chr10 119012937 119012937 1 + G C LUSC 119012936 + 119012916 119012956 41 CTATCCAATTCCCATATTTGCGGGATTCTGCATCATGTTTG CTATCCAATTCCCATATTTGCCGGATTCTGCATCATGTTTG < 41bp 0.821769860477178 0.594361418757051 0.9218662 0.40239838 prediction 0.454816883440255 Functional Loss - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119012936 chr10:119012937 synonymous SNV . 0 22 hm5C_associated_SNPs_76760 0 0 0 0 2 SLC18A2 chr10:119012910 3'AG 119012910 Downstream 28bp
chr10 119012937 119012937 1 + G C LUSC 119012936 + 119012916 119012956 41 CTATCCAATTCCCATATTTGCGGGATTCTGCATCATGTTTG CTATCCAATTCCCATATTTGCCGGATTCTGCATCATGTTTG < 41bp 0.821769860477178 0.594361418757051 0.9218662 0.40239838 prediction 0.454816883440255 Functional Loss - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119012936 chr10:119012937 synonymous SNV . 0 22 hm5C_associated_SNPs_76760 0 0 0 0 2 SLC18A2 chr10:119012968 5'GT 119012968 Upstream 32bp
chr15 64426947 64426947 1 + C T CESC 64426945 + 64426925 64426965 41 GAAGAAGCGGGAGGCCGAGGCTCGGCTGCTGTGGGCCAACA GAAGAAGCGGGAGGCCGAGGCTTGGCTGCTGTGGGCCAACA < 41bp 0.834238164194241 0.606830095644267 0.655762 0.40803096 prediction 0.45481613709995 Functional Loss - SNX1 ENSG00000028528 CDS Human protein_coding chr15:64426945 chr15:64426947 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_76761 0 0 1 0 2 SNX1 chr15:64426863 3'AG 64426863 Downstream 85bp
chr15 64426947 64426947 1 + C T CESC 64426945 + 64426925 64426965 41 GAAGAAGCGGGAGGCCGAGGCTCGGCTGCTGTGGGCCAACA GAAGAAGCGGGAGGCCGAGGCTTGGCTGCTGTGGGCCAACA < 41bp 0.834238164194241 0.606830095644267 0.655762 0.40803096 prediction 0.45481613709995 Functional Loss - SNX1 ENSG00000028528 CDS Human protein_coding chr15:64426945 chr15:64426947 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_76761 0 0 1 0 2 SNX1 chr15:64427006 5'GT 64427006 Upstream 60bp
chr3 108403149 108403149 1 + G A rs151259123 108403146 + 108403126 108403166 41 CCTCAAATGCCTGCAGTTTGCCCGGGAGTCGTCTCTGCAAC CCTCAAATGCCTGCAGTTTGCCCAGGAGTCGTCTCTGCAAC < 41bp 0.762527161287901 0.535120613546435 0.2681263 0.07491496 prediction 0.454813095482932 Functional Loss - DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108403146 chr3:108403149 synonymous SNV . 0 24 hm5C_associated_SNPs_76763 0 0 1 0 2 DZIP3 chr3:108403063 3'AG 108403063 Downstream 87bp
chr3 108403149 108403149 1 + G A rs151259123 108403146 + 108403126 108403166 41 CCTCAAATGCCTGCAGTTTGCCCGGGAGTCGTCTCTGCAAC CCTCAAATGCCTGCAGTTTGCCCAGGAGTCGTCTCTGCAAC < 41bp 0.762527161287901 0.535120613546435 0.2681263 0.07491496 prediction 0.454813095482932 Functional Loss - DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108403146 chr3:108403149 synonymous SNV . 0 24 hm5C_associated_SNPs_76763 0 0 1 0 2 DZIP3 chr3:108403188 5'GT 108403188 Upstream 40bp
chr12 7064361 7064361 1 + G A UCEC 7064358 + 7064338 7064378 41 TTGGAGACCTTCGACAGCCTCACGGACCTGGTGGAGCATTT TTGGAGACCTTCGACAGCCTCACAGACCTGGTGGAGCATTT < 41bp 0.775292634088969 0.547888037621485 0.13533887 0.0788562 prediction 0.454809192934967 Functional Loss - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7064358 chr12:7064361 synonymous SNV . 0 24 hm5C_associated_SNPs_76764 0 0 0 0 1 PTPN6 chr12:7064430 5'GT 7064430 Upstream 70bp
chr3 121575953 121575953 1 + C T SKCM 121575950 + 121575930 121575970 41 TCCCAATCTTGTAAAACATTCTCCATCTGAAGATAAGATGT TCCCAATCTTGTAAAACATTCTCTATCTGAAGATAAGATGT < 41bp 0.746418815117124 0.519016288390093 0.90559435 0.20742282 prediction 0.454805053454063 Functional Loss - EAF2 ENSG00000145088 CDS Human protein_coding chr3:121575950 chr3:121575953 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_76766 0 0 1 0 1 EAF2 chr3:121576003 5'GT 121576003 Upstream 51bp
chr1 113933893 113933893 1 + A C UCEC 113933892 + 113933872 113933912 41 GAGGTAAACGGGACGCCTGTCAGCGGGCTCACCAACCGGGA GAGGTAAACGGGACGCCTGTCCGCGGGCTCACCAACCGGGA < 41bp 0.76317438190557 0.535777161728186 0.73374826 0.22734585 prediction 0.454794440354768 Functional Loss - MAGI3 ENSG00000081026 CDS Human protein_coding chr1:113933892 chr1:113933893 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_76769 0 0 1 0 1 MAGI3 chr1:113933971 5'GT 113933971 Upstream 79bp
chr4 95585166 95585166 1 + C T SKCM 95585164 + 95585144 95585184 41 TTGGAAGGTCAGACCTTTTTCTCCAAGAAGGACAAGCCCCT TTGGAAGGTCAGACCTTTTTCTTCAAGAAGGACAAGCCCCT < 41bp 0.727396302616235 0.441405299133632 0.94727194 0.07227725 prediction 0.45479260523247 Functional Loss - PDLIM5 ENSG00000163110 CDS Human protein_coding chr4:95585164 chr4:95585166 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_76770 0 0 1 0 2 PDLIM5 chr4:95585129 3'AG 95585129 Downstream 38bp
chr4 95585166 95585166 1 + C T SKCM 95585164 + 95585144 95585184 41 TTGGAAGGTCAGACCTTTTTCTCCAAGAAGGACAAGCCCCT TTGGAAGGTCAGACCTTTTTCTTCAAGAAGGACAAGCCCCT < 41bp 0.727396302616235 0.441405299133632 0.94727194 0.07227725 prediction 0.45479260523247 Functional Loss - PDLIM5 ENSG00000163110 CDS Human protein_coding chr4:95585164 chr4:95585166 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_76770 0 0 1 0 2 PDLIM5 chr4:95585186 5'GT 95585186 Upstream 21bp
chr19 50028742 50028742 1 + G A LAML 50028739 + 50028719 50028759 41 CCAGCCAAGTCCTCCGTGCTCGTGGTGGGAATCGTCATCGG CCAGCCAAGTCCTCCGTGCTCGTAGTGGGAATCGTCATCGG < 41bp 0.78283883168119 0.555443601481113 0.911635 0.85909593 prediction 0.454790460400153 Functional Loss - FCGRT ENSG00000104870 CDS Human protein_coding chr19:50028739 chr19:50028742 synonymous SNV . 0 24 hm5C_associated_SNPs_76771 0 0 1 0 2 FCGRT chr19:50028714 3'AG 50028714 Downstream 29bp
chr19 50028742 50028742 1 + G A LAML 50028739 + 50028719 50028759 41 CCAGCCAAGTCCTCCGTGCTCGTGGTGGGAATCGTCATCGG CCAGCCAAGTCCTCCGTGCTCGTAGTGGGAATCGTCATCGG < 41bp 0.78283883168119 0.555443601481113 0.911635 0.85909593 prediction 0.454790460400153 Functional Loss - FCGRT ENSG00000104870 CDS Human protein_coding chr19:50028739 chr19:50028742 synonymous SNV . 0 24 hm5C_associated_SNPs_76771 0 0 1 0 2 FCGRT chr19:50028830 5'GT 50028830 Upstream 89bp
chr2 239006934 239006934 1 + G C LUAD 239006933 + 239006913 239006953 41 GGCCGCAGCACCACCAGGGCCGAGGTGGACCTCGTCGTGCA GGCCGCAGCACCACCAGGGCCCAGGTGGACCTCGTCGTGCA < 41bp 0.869078147628286 0.641684221971907 0.81987953 0.29363665 prediction 0.454787851312758 Functional Loss - SCLY ENSG00000132330 CDS Human protein_coding chr2:239006933 chr2:239006934 nonsynonymous SNV 0.146 1 22 hm5C_associated_SNPs_76772 0 0 1 0 1 SCLY chr2:239006843 3'AG 239006843 Downstream 92bp
chr22 42209293 42209293 1 + G A UCEC 42209290 + 42209270 42209310 41 TTCTCCCACGTGGTGGAGAACACGGCCTTCTTCGGCGATGT TTCTCCCACGTGGTGGAGAACACAGCCTTCTTCGGCGATGT < 41bp 0.727393847363323 0.480900120542491 0.36273026 0.16687632 prediction 0.454787694726646 Functional Loss - CCDC134 ENSG00000100147 CDS Human protein_coding chr22:42209290 chr22:42209293 synonymous SNV . 0 24 hm5C_associated_SNPs_76773 0 0 1 0 1 CCDC134 chr22:42209268 3'AG 42209268 Downstream 26bp
chr1 150463952 150463952 1 + G A LUAD 150463949 + 150463929 150463969 41 CTGCTCGACCCTTCCGGAGGCTAGAGGCTTCACGGGATCAG CTGCTCGACCCTTCCGGAGGCTAAAGGCTTCACGGGATCAG < 41bp 0.727382900627938 0.487194623349386 0.30890924 0.22061539 prediction 0.454765801255876 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150463949 chr1:150463952 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_76780 0 0 1 0 2 TARS2 chr1:150463870 3'AG 150463870 Downstream 83bp
chr1 150463952 150463952 1 + G A LUAD 150463949 + 150463929 150463969 41 CTGCTCGACCCTTCCGGAGGCTAGAGGCTTCACGGGATCAG CTGCTCGACCCTTCCGGAGGCTAAAGGCTTCACGGGATCAG < 41bp 0.727382900627938 0.487194623349386 0.30890924 0.22061539 prediction 0.454765801255876 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150463949 chr1:150463952 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_76780 0 0 1 0 2 TARS2 chr1:150463987 5'GT 150463987 Upstream 36bp
chr11 117066550 117066550 1 + G A STAD 117066547 + 117066527 117066567 41 GCAGAGTCGAGGGAGCACAACCGGGACTGCATCCTCCTCGA GCAGAGTCGAGGGAGCACAACCGAGACTGCATCCTCCTCGA < 41bp 0.727381185617607 0.475327902599944 0.8995006 0.59103763 prediction 0.454762371235214 Functional Loss - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117066547 chr11:117066550 synonymous SNV . 0 24 hm5C_associated_SNPs_76782 0 0 0 0 2 SIDT2 chr11:117066518 3'AG 117066518 Downstream 33bp
chr11 117066550 117066550 1 + G A STAD 117066547 + 117066527 117066567 41 GCAGAGTCGAGGGAGCACAACCGGGACTGCATCCTCCTCGA GCAGAGTCGAGGGAGCACAACCGAGACTGCATCCTCCTCGA < 41bp 0.727381185617607 0.475327902599944 0.8995006 0.59103763 prediction 0.454762371235214 Functional Loss - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117066547 chr11:117066550 synonymous SNV . 0 24 hm5C_associated_SNPs_76782 0 0 0 0 2 SIDT2 chr11:117066631 5'GT 117066631 Upstream 82bp
chr5 72864293 72864293 1 + C T GBM 72864291 + 72864271 72864311 41 AGAACCTATAAAAACCTTTTCTCGATTTAAAGACACAGCAT AGAACCTATAAAAACCTTTTCTTGATTTAAAGACACAGCAT < 41bp 0.850417451993546 0.623049808141649 0.26701975 0.049259245 prediction 0.454735287703794 Functional Loss - UTP15 ENSG00000164338 CDS Human protein_coding chr5:72864291 chr5:72864293 stopgain 0.998 1 23 hm5C_associated_SNPs_76787 0 0 1 0 1 UTP15 chr5:72864245 3'AG 72864245 Downstream 49bp
chrX 22051182 22051182 1 + G A GBM 22051179 + 22051159 22051199 41 AAAGAAGGCCAACAGAGGCACTCGAATTGCCCTGGTCGTGT AAAGAAGGCCAACAGAGGCACTCAAATTGCCCTGGTCGTGT < 41bp 0.756240169609422 0.528874930235069 0.5762664 0.21073663 prediction 0.454730478748706 Functional Loss - PHEX ENSG00000102174 CDS Human protein_coding chrX:22051179 chrX:22051182 nonsynonymous SNV 0.020 1 24 hm5C_associated_SNPs_76788 0 0 0 0 1 PHEX chrX:22051241 5'GT 22051241 Upstream 60bp
chr19 19646432 19646432 1 + C T UCEC 19646430 + 19646410 19646450 41 GTCGGGGGCCCCTGCACCCGCGCGCTGGCCACGCTCAAGCT GTCGGGGGCCCCTGCACCCGCGTGCTGGCCACGCTCAAGCT < 41bp 0.778848668693987 0.551485886543738 0.90236413 0.9098247 prediction 0.454725564300498 Functional Loss - YJEFN3 ENSG00000250067;ENSG00000258674 CDS Human other chr19:19646430 chr19:19646432 nonsynonymous SNV 0.573 0 23 hm5C_associated_SNPs_76791 0 0 1 0 1 YJEFN3 chr19:19646338 3'AG 19646338 Downstream 95bp
chr5 137520243 137520243 1 + C T OV 137520240 + 137520220 137520260 41 TGCAACTGGGATTCCCATCCCTGCACTCGTTCATCAAGGAA TGCAACTGGGATTCCCATCCCTGTACTCGTTCATCAAGGAA < 41bp 0.727361330212756 0.497509404738675 0.074564785 0.08703625 prediction 0.454722660425511 Functional Loss - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137520240 chr5:137520243 nonsynonymous SNV 0.902 1 24 hm5C_associated_SNPs_76792 0 0 1 0 1 KIF20A chr5:137520201 3'AG 137520201 Downstream 43bp
chr12 8327046 8327046 1 + T C UCEC 8327045 + 8327025 8327065 41 ATATCAGTCACCTGGTGTCCCTCGGTGAGTCCCTCAACATT ATATCAGTCACCTGGTGTCCCCCGGTGAGTCCCTCAACATT < 41bp 0.769148041410921 0.541797551171344 0.044843376 0.09024212 prediction 0.454700980479153 Functional Loss - ZNF705A ENSG00000196946 CDS Human protein_coding chr12:8327045 chr12:8327046 nonsynonymous SNV 0.003 2 22 hm5C_associated_SNPs_76799 0 0 0 0 1 ZNF705A chr12:8327048 5'GT 8327048 Upstream 3bp
chr11 63987951 63987951 1 + C T LGG 63987949 + 63987929 63987969 41 ATGGCTGGCTGCCGCCTGGCCTCCAAAGGCCGCACCATGGC ATGGCTGGCTGCCGCCTGGCCTTCAAAGGCCGCACCATGGC < 41bp 0.845999248401937 0.618651064443776 0.96741605 0.37685937 prediction 0.454696367916321 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63987949 chr11:63987951 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_76801 0 0 1 0 1 FERMT3 chr11:63987908 3'AG 63987908 Downstream 44bp
chr3 171969147 171969147 1 + C T GBM 171969145 + 171969125 171969165 41 TGAAAGACCGCCAGATCGATCGCCAGAACCGCCTCAACAGC TGAAAGACCGCCAGATCGATCGTCAGAACCGCCTCAACAGC < 41bp 0.727341878628382 0.434856685847924 0.3483944 0.21951663 prediction 0.454683757256765 Functional Loss - FNDC3B ENSG00000075420 CDS Human protein_coding chr3:171969145 chr3:171969147 synonymous SNV . 0 23 hm5C_associated_SNPs_76803 0 0 1 0 1 FNDC3B chr3:171969050 3'AG 171969050 Downstream 98bp
chr16 29819072 29819072 1 + G A BLCA 29819069 + 29819049 29819089 41 CGCTTCAAGCGCAAGGACCGCATGAGCTACCACGTGCGCTC CGCTTCAAGCGCAAGGACCGCATAAGCTACCACGTGCGCTC < 41bp 0.746808962594665 0.519469782481774 0.2738778 0.106717706 prediction 0.454678360225782 Functional Loss - MAZ ENSG00000103495 CDS Human protein_coding chr16:29819069 chr16:29819072 nonsynonymous SNV 0.974 3 24 hm5C_associated_SNPs_76804 0 0 1 0 1 MAZ chr16:29819149 5'GT 29819149 Upstream 78bp
chr1 158324199 158324199 1 + G T LUAD 158324197 + 158324177 158324217 41 TCTACAATCCTATCATCTAGCAGCAGAGGAGCAGCTGTCCT TCTACAATCCTATCATCTAGCATCAGAGGAGCAGCTGTCCT < 41bp 0.867686128225979 0.640350164500174 0.83557934 0.30161673 prediction 0.45467192745161 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158324197 chr1:158324199 nonsynonymous SNV 0.044 0 23 hm5C_associated_SNPs_76806 0 0 0 0 1 CD1E chr1:158324167 3'AG 158324167 Downstream 33bp
chr15 102292767 102292767 1 + C T GBM 102292765 + 102292745 102292785 41 CGGCAGAGCAGGCACAGCGGCGCGACGAGATGCTGCTTCTC CGGCAGAGCAGGCACAGCGGCGTGACGAGATGCTGCTTCTC < 41bp 0.759808446035451 0.53247284565123 0.39131868 0.34727898 prediction 0.454671200768444 Functional Loss - LOC100128108;OR4F6 ENSG00000259660 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102292765 chr15:102292767 . . 0 23 hm5C_associated_SNPs_76807 0 0 0 0 1 LOC100128108;OR4F6 chr15:102292669 3'AG 102292669 Downstream 99bp
chr20 33855127 33855127 1 + G A HNSC 33855124 + 33855104 33855144 41 CCAGGCCCCCTCGGCCGCCCCTCGGGGACCGGCCATCCACA CCAGGCCCCCTCGGCCGCCCCTCAGGGACCGGCCATCCACA < 41bp 0.812642491233177 0.585308126514974 0.65726143 0.15246505 prediction 0.454668729436407 Functional Loss - MMP24 ENSG00000125966 CDS Human protein_coding chr20:33855124 chr20:33855127 nonsynonymous SNV 0.882 1 24 hm5C_associated_SNPs_76808 0 0 0 0 1 MMP24 chr20:33855222 5'GT 33855222 Upstream 96bp
chr5 72419180 72419180 1 + G T LIHC 72419178 + 72419158 72419198 41 AAACACATCCCACCCTGCCTCCGGGAAGGGGCCTCTCCTGG AAACACATCCCACCCTGCCTCCTGGAAGGGGCCTCTCCTGG < 41bp 0.727330542189099 0.452335808177015 0.42772692 0.10448748 prediction 0.454661084378197 Functional Loss - TMEM171 ENSG00000157111 UTR5 Human protein_coding chr5:72419178 chr5:72419180 . . 0 23 hm5C_associated_SNPs_76811 0 0 0 0 1 TMEM171 chr5:72419133 3'AG 72419133 Downstream 48bp
chr3 49450057 49450057 1 + G A BRCA 49450054 + 49450034 49450074 41 TTCTACGGGAATACAGTGACCGGGTTGTATCACCGTCCAGG TTCTACGGGAATACAGTGACCGGATTGTATCACCGTCCAGG < 41bp 0.727326848669078 0.493018049446487 0.52004933 0.39673403 prediction 0.454653697338157 Functional Loss - TCTA ENSG00000145022 CDS Human protein_coding chr3:49450054 chr3:49450057 synonymous SNV . 0 24 hm5C_associated_SNPs_76815 0 0 1 0 1 TCTA chr3:49450073 5'GT 49450073 Upstream 17bp
chr6 160858111 160858111 1 + T C STAD 160858110 + 160858090 160858130 41 CTCTATATAGACTTTTTCATCTCGGGCGTGGTGGAACTGCC CTCTATATAGACTTTTTCATCCCGGGCGTGGTGGAACTGCC < 41bp 0.818218818870071 0.590897033137737 0.24721447 0.5010432 prediction 0.454643571464667 Functional Loss - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160858110 chr6:160858111 nonsynonymous SNV 0.955 3 22 hm5C_associated_SNPs_76817 0 0 0 1 1 SLC22A3 chr6:160858029 3'AG 160858029 Downstream 83bp
chr1 32688163 32688163 1 + G A CESC 32688160 + 32688140 32688180 41 AGCCGATCCTACTGCAGGGCCATGAGCGGTCCATTACGCAG AGCCGATCCTACTGCAGGGCCATAAGCGGTCCATTACGCAG < 41bp 0.759977786946385 0.532659479908429 0.20205486 0.18804723 prediction 0.454636614075913 Functional Loss - EIF3I ENSG00000084623 CDS Human protein_coding chr1:32688160 chr1:32688163 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_76819 0 0 1 0 2 EIF3I chr1:32688139 3'AG 32688139 Downstream 25bp
chr1 32688163 32688163 1 + G A CESC 32688160 + 32688140 32688180 41 AGCCGATCCTACTGCAGGGCCATGAGCGGTCCATTACGCAG AGCCGATCCTACTGCAGGGCCATAAGCGGTCCATTACGCAG < 41bp 0.759977786946385 0.532659479908429 0.20205486 0.18804723 prediction 0.454636614075913 Functional Loss - EIF3I ENSG00000084623 CDS Human protein_coding chr1:32688160 chr1:32688163 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_76819 0 0 1 0 2 EIF3I chr1:32688231 5'GT 32688231 Upstream 69bp
chr2 85510676 85510676 1 + C T STAD 85510674 + 85510654 85510694 41 TCCAGCGCCACAGTCAAGGACACGAGGTCACCATCTCCAGC TCCAGCGCCACAGTCAAGGACATGAGGTCACCATCTCCAGC < 41bp 0.7273182659957 0.453265847541938 0.0440301 0.16378215 prediction 0.454636531991399 Functional Loss - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85510674 chr2:85510676 nonsynonymous SNV 0.906 4 23 hm5C_associated_SNPs_76820 0 0 1 0 2 TCF7L1 chr2:85510618 3'AG 85510618 Downstream 59bp
chr2 85510676 85510676 1 + C T STAD 85510674 + 85510654 85510694 41 TCCAGCGCCACAGTCAAGGACACGAGGTCACCATCTCCAGC TCCAGCGCCACAGTCAAGGACATGAGGTCACCATCTCCAGC < 41bp 0.7273182659957 0.453265847541938 0.0440301 0.16378215 prediction 0.454636531991399 Functional Loss - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85510674 chr2:85510676 nonsynonymous SNV 0.906 4 23 hm5C_associated_SNPs_76820 0 0 1 0 2 TCF7L1 chr2:85510701 5'GT 85510701 Upstream 26bp
chr17 21217526 21217526 1 + T C COAD 21217525 + 21217505 21217545 41 CTGCCTTCGTGAAGGAGATCCTGGGAGAAGACTCATAGGGG CTGCCTTCGTGAAGGAGATCCCGGGAGAAGACTCATAGGGG < 41bp 0.727312639179788 0.49401652581662 0.54112715 0.8610458 prediction 0.454625278359576 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21217525 chr17:21217526 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_76823 0 0 1 0 1 MAP2K3 chr17:21217459 3'AG 21217459 Downstream 68bp
chr19 50001257 50001257 1 + G C BLCA 50001256 + 50001236 50001276 41 ATCCGCAAGTACAACCGCTTCGAGAAGCGCCACAAGAACAT ATCCGCAAGTACAACCGCTTCCAGAAGCGCCACAAGAACAT < 41bp 0.88187695504657 0.654567967197142 0.35169944 0.37924784 prediction 0.454617975698855 Functional Loss - RPS11 ENSG00000142534 CDS Human protein_coding chr19:50001256 chr19:50001257 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_76825 0 0 1 0 2 RPS11 chr19:50001174 3'AG 50001174 Downstream 84bp
chr19 50001257 50001257 1 + G C BLCA 50001256 + 50001236 50001276 41 ATCCGCAAGTACAACCGCTTCGAGAAGCGCCACAAGAACAT ATCCGCAAGTACAACCGCTTCCAGAAGCGCCACAAGAACAT < 41bp 0.88187695504657 0.654567967197142 0.35169944 0.37924784 prediction 0.454617975698855 Functional Loss - RPS11 ENSG00000142534 CDS Human protein_coding chr19:50001256 chr19:50001257 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_76825 0 0 1 0 2 RPS11 chr19:50001303 5'GT 50001303 Upstream 47bp
chr5 54320601 54320601 1 + C T UCEC 54320599 + 54320579 54320619 41 TGGAGGTGTTCTGATTGATCCACAGTGGGTGCTGACAGCAG TGGAGGTGTTCTGATTGATCCATAGTGGGTGCTGACAGCAG < 41bp 0.779949292775145 0.552641270282122 0.060545832 0.046346188 prediction 0.454616044986047 Functional Loss - GZMK ENSG00000113088 CDS Human protein_coding chr5:54320599 chr5:54320601 stopgain 0.610 0 23 hm5C_associated_SNPs_76827 0 0 0 0 1 GZMK chr5:54320635 5'GT 54320635 Upstream 35bp
chr19 8464939 8464939 1 + C T HNSC 8464937 + 8464917 8464957 41 GAGCGCTACCGCGCCATCACCTCCGCGTGCGTGTCGGCAGC GAGCGCTACCGCGCCATCACCTTCGCGTGCGTGTCGGCAGC < 41bp 0.820125390691888 0.592820264380634 0.8281902 0.07023853 prediction 0.454610252622507 Functional Loss - RAB11B ENSG00000185236 CDS Human protein_coding chr19:8464937 chr19:8464939 nonsynonymous SNV 0.956 4 23 hm5C_associated_SNPs_76828 0 0 1 0 1 RAB11B chr19:8464942 5'GT 8464942 Upstream 4bp
chr5 251562 251562 1 + G A GBM 251559 + 251539 251579 41 GCACGGAAGGAGTCACGGGGCGCGCATGCCAGGGAAGACTA GCACGGAAGGAGTCACGGGGCGCACATGCCAGGGAAGACTA < 41bp 0.7462475844474 0.518947673592867 0.17473859 0.18030688 prediction 0.454599821709066 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:251559 chr5:251562 synonymous SNV . 0 24 hm5C_associated_SNPs_76830 0 0 1 0 1 SDHA chr5:251583 5'GT 251583 Upstream 22bp
chr15 43641185 43641185 1 + C T rs62019439 43641182 + 43641162 43641202 41 GGGCATGGAACATTTCTCAACTCCGGTGAGGGAGGATCCCT GGGCATGGAACATTTCTCAACTCTGGTGAGGGAGGATCCCT < 41bp 0.751232328221338 0.523933059288367 0.278899 0.27649266 prediction 0.454598537865942 Functional Loss - ADAL ENSG00000168803 CDS Human protein_coding chr15:43641182 chr15:43641185 synonymous SNV . 0 24 hm5C_associated_SNPs_76831 0 0 1 0 2 ADAL chr15:43641105 3'AG 43641105 Downstream 81bp
chr15 43641185 43641185 1 + C T rs62019439 43641182 + 43641162 43641202 41 GGGCATGGAACATTTCTCAACTCCGGTGAGGGAGGATCCCT GGGCATGGAACATTTCTCAACTCTGGTGAGGGAGGATCCCT < 41bp 0.751232328221338 0.523933059288367 0.278899 0.27649266 prediction 0.454598537865942 Functional Loss - ADAL ENSG00000168803 CDS Human protein_coding chr15:43641182 chr15:43641185 synonymous SNV . 0 24 hm5C_associated_SNPs_76831 0 0 1 0 2 ADAL chr15:43641243 5'GT 43641243 Upstream 59bp
chr16 30764754 30764754 1 + C T SKCM 30764752 + 30764732 30764772 41 TGCTGGAAGCAGTGAGCTTTCTCCATGCCAACAACATTGTG TGCTGGAAGCAGTGAGCTTTCTTCATGCCAACAACATTGTG < 41bp 0.86859308961752 0.641302434914887 0.95878696 0.23095345 prediction 0.454581309405265 Functional Loss - PHKG2 ENSG00000156873 CDS Human protein_coding chr16:30764752 chr16:30764754 synonymous SNV . 0 23 hm5C_associated_SNPs_76836 0 0 1 0 1 PHKG2 chr16:30764715 3'AG 30764715 Downstream 40bp
chr4 154387597 154387597 1 + G C rs71620317 154387596 + 154387576 154387616 41 CGGCTGCTACTGCCGCACCGCGGCGGCCGTGAACCTCCTGC CGGCTGCTACTGCCGCACCGCCGCGGCCGTGAACCTCCTGC < 41bp 0.86375807536562 0.63647225106046 0.75919676 0.37810272 prediction 0.45457164861032 Functional Loss - TMEM131L ENSG00000121210 CDS Human protein_coding chr4:154387596 chr4:154387597 synonymous SNV . 0 22 hm5C_associated_SNPs_76838 0 0 1 0 1 TMEM131L chr4:154387673 5'GT 154387673 Upstream 77bp
chr20 47845325 47845325 1 + C T UCEC 47845323 + 47845303 47845343 41 CCCGCCAGGCTCCAGTCACCCGCGTGCTGGTGCTAGTGCCC CCCGCCAGGCTCCAGTCACCCGTGTGCTGGTGCTAGTGCCC < 41bp 0.841677931923689 0.614400348905228 0.40231237 0.40366516 prediction 0.454555166036923 Functional Loss - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47845323 chr20:47845325 synonymous SNV . 0 23 hm5C_associated_SNPs_76840 0 0 1 0 1 DDX27 chr20:47845252 3'AG 47845252 Downstream 74bp
chr7 148427336 148427336 1 + G A BLCA 148427333 + 148427313 148427353 41 ACGGCAGAGCATGGCCAAGTCCAGATATATGGAGCTCTACA ACGGCAGAGCATGGCCAAGTCCAAATATATGGAGCTCTACA < 41bp 0.727277289858064 0.489016638818735 0.37864324 0.17289844 prediction 0.454554579716127 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148427333 chr7:148427336 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_76841 0 0 1 0 1 CUL1 chr7:148427354 5'GT 148427354 Upstream 19bp
chr12 94645238 94645238 1 + G A UCEC 94645235 + 94645215 94645255 41 ACCTGGAGCTCTACGTCGAGCAGGAGTCAGTTCCTTCCACA ACCTGGAGCTCTACGTCGAGCAGAAGTCAGTTCCTTCCACA < 41bp 0.785359259569191 0.558082036280683 0.9049579 0.78746176 prediction 0.454554446577017 Functional Loss - PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94645235 chr12:94645238 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_76842 0 0 0 0 2 PLXNC1 chr12:94645202 3'AG 94645202 Downstream 37bp
chr12 94645238 94645238 1 + G A UCEC 94645235 + 94645215 94645255 41 ACCTGGAGCTCTACGTCGAGCAGGAGTCAGTTCCTTCCACA ACCTGGAGCTCTACGTCGAGCAGAAGTCAGTTCCTTCCACA < 41bp 0.785359259569191 0.558082036280683 0.9049579 0.78746176 prediction 0.454554446577017 Functional Loss - PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94645235 chr12:94645238 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_76842 0 0 0 0 2 PLXNC1 chr12:94645304 5'GT 94645304 Upstream 67bp
chr17 78410018 78410018 1 + G A rs575745977 78410015 + 78409995 78410035 41 GTGAGAGCACACGTCCTCGTCTCGTTCCTGATCGAACGCGG GTGAGAGCACACGTCCTCGTCTCATTCCTGATCGAACGCGG < 41bp 0.764059015455552 0.536790762382875 0.14226961 0.15576324 prediction 0.454536506145352 Functional Loss - ENDOV ENSG00000173818 UTR3 Human protein_coding chr17:78410015 chr17:78410018 . . 0 24 hm5C_associated_SNPs_76845 0 0 0 2 1 ENDOV chr17:78409933 3'AG 78409933 Downstream 86bp
chr8 27657152 27657152 1 + C T LGG 27657149 + 27657129 27657169 41 ATGTTCAGATGTACCAGAACCTGCAGTCTGTGGGATAAGTA ATGTTCAGATGTACCAGAACCTGTAGTCTGTGGGATAAGTA < 41bp 0.727268107631508 0.494440344021871 0.30180898 0.21924308 prediction 0.454536215263016 Functional Loss - ESCO2 ENSG00000171320 CDS Human protein_coding chr8:27657149 chr8:27657152 nonsynonymous SNV 0.843 4 24 hm5C_associated_SNPs_76846 0 0 1 0 2 ESCO2 chr8:27657058 3'AG 27657058 Downstream 95bp
chr8 27657152 27657152 1 + C T LGG 27657149 + 27657129 27657169 41 ATGTTCAGATGTACCAGAACCTGCAGTCTGTGGGATAAGTA ATGTTCAGATGTACCAGAACCTGTAGTCTGTGGGATAAGTA < 41bp 0.727268107631508 0.494440344021871 0.30180898 0.21924308 prediction 0.454536215263016 Functional Loss - ESCO2 ENSG00000171320 CDS Human protein_coding chr8:27657149 chr8:27657152 nonsynonymous SNV 0.843 4 24 hm5C_associated_SNPs_76846 0 0 1 0 2 ESCO2 chr8:27657233 5'GT 27657233 Upstream 82bp
chr10 94835633 94835633 1 + G A UCEC 94835630 + 94835610 94835650 41 CTCTTTGGAGGACACGAAACCACGGCCAGTGCAGCCACATC CTCTTTGGAGGACACGAAACCACAGCCAGTGCAGCCACATC < 41bp 0.759115053997613 0.53184817623394 0.3871947 0.13321239 prediction 0.454533755527345 Functional Loss - CYP26A1 ENSG00000095596 CDS Human protein_coding chr10:94835630 chr10:94835633 synonymous SNV . 0 24 hm5C_associated_SNPs_76847 0 0 0 0 2 CYP26A1 chr10:94835583 3'AG 94835583 Downstream 51bp
chr10 94835633 94835633 1 + G A UCEC 94835630 + 94835610 94835650 41 CTCTTTGGAGGACACGAAACCACGGCCAGTGCAGCCACATC CTCTTTGGAGGACACGAAACCACAGCCAGTGCAGCCACATC < 41bp 0.759115053997613 0.53184817623394 0.3871947 0.13321239 prediction 0.454533755527345 Functional Loss - CYP26A1 ENSG00000095596 CDS Human protein_coding chr10:94835630 chr10:94835633 synonymous SNV . 0 24 hm5C_associated_SNPs_76847 0 0 0 0 2 CYP26A1 chr10:94835717 5'GT 94835717 Upstream 85bp
chr1 207075402 207075402 1 + G A UCEC 207075399 + 207075379 207075419 41 CACAGGCGGTTTCTGCTATTCCGGAGAGCATTCAAACAGGT CACAGGCGGTTTCTGCTATTCCGAAGAGCATTCAAACAGGT < 41bp 0.747167902296021 0.519912942334839 0.73895514 0.396018 prediction 0.454509919922364 Functional Loss - IL24 ENSG00000162892 CDS Human protein_coding chr1:207075399 chr1:207075402 nonsynonymous SNV 0.415 0 24 hm5C_associated_SNPs_76852 0 0 0 0 2 IL24 chr1:207075343 3'AG 207075343 Downstream 60bp
chr1 207075402 207075402 1 + G A UCEC 207075399 + 207075379 207075419 41 CACAGGCGGTTTCTGCTATTCCGGAGAGCATTCAAACAGGT CACAGGCGGTTTCTGCTATTCCGAAGAGCATTCAAACAGGT < 41bp 0.747167902296021 0.519912942334839 0.73895514 0.396018 prediction 0.454509919922364 Functional Loss - IL24 ENSG00000162892 CDS Human protein_coding chr1:207075399 chr1:207075402 nonsynonymous SNV 0.415 0 24 hm5C_associated_SNPs_76852 0 0 0 0 2 IL24 chr1:207075417 5'GT 207075417 Upstream 16bp
chr12 58113926 58113926 1 + C T HNSC 58113923 + 58113903 58113943 41 TCCGGGTCCGGGTCACCAAGCTCCGTCTCGGAGGCCCTAAT TCCGGGTCCGGGTCACCAAGCTCTGTCTCGGAGGCCCTAAT < 41bp 0.727719550083449 0.500466615694496 0.14717925 0.061357588 prediction 0.454505868777906 Functional Loss - OS9 ENSG00000135506 CDS Human protein_coding chr12:58113923 chr12:58113926 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_76856 0 0 1 0 1 OS9 chr12:58113882 3'AG 58113882 Downstream 45bp
chr14 76957962 76957962 1 + C T SKCM 76957960 + 76957940 76957980 41 GCCTCGCGGGGCTGCTGGAGCTCTACCGGGCCATCCTGCAG GCCTCGCGGGGCTGCTGGAGCTTTACCGGGCCATCCTGCAG < 41bp 0.72725213644307 0.452852161545759 0.7166335 0.24201596 prediction 0.45450427288614 Functional Loss - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76957960 chr14:76957962 synonymous SNV . 0 23 hm5C_associated_SNPs_76857 0 0 0 0 1 ESRRB chr14:76958059 5'GT 76958059 Upstream 98bp
chr12 101720957 101720957 1 + G T LUSC 101720955 + 101720935 101720975 41 ATTGTCCTGCGGTTCCTGGCCGGGACCCAACCTGAGGAGAT ATTGTCCTGCGGTTCCTGGCCGTGACCCAACCTGAGGAGAT < 41bp 0.727251234062367 0.40393551431024 0.6819929 0.04229039 prediction 0.454502468124734 Functional Loss - UTP20 ENSG00000120800 CDS Human protein_coding chr12:101720955 chr12:101720957 nonsynonymous SNV 0.800 3 23 hm5C_associated_SNPs_76858 0 0 1 0 2 UTP20 chr12:101720859 3'AG 101720859 Downstream 99bp
chr12 101720957 101720957 1 + G T LUSC 101720955 + 101720935 101720975 41 ATTGTCCTGCGGTTCCTGGCCGGGACCCAACCTGAGGAGAT ATTGTCCTGCGGTTCCTGGCCGTGACCCAACCTGAGGAGAT < 41bp 0.727251234062367 0.40393551431024 0.6819929 0.04229039 prediction 0.454502468124734 Functional Loss - UTP20 ENSG00000120800 CDS Human protein_coding chr12:101720955 chr12:101720957 nonsynonymous SNV 0.800 3 23 hm5C_associated_SNPs_76858 0 0 1 0 2 UTP20 chr12:101721025 5'GT 101721025 Upstream 69bp
chr2 1457506 1457506 1 + C T UCEC 1457504 + 1457484 1457524 41 CGCCTCCAACACGGCCCTGGCACGATGGCTCCCTCCAGTCT CGCCTCCAACACGGCCCTGGCATGATGGCTCCCTCCAGTCT < 41bp 0.832076019015268 0.604825695279072 0.07949135 0.07215455 prediction 0.454500647472391 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1457504 chr2:1457506 stopgain 0.021 1 23 hm5C_associated_SNPs_76859 0 0 0 0 2 TPO chr2:1457466 3'AG 1457466 Downstream 41bp
chr2 1457506 1457506 1 + C T UCEC 1457504 + 1457484 1457524 41 CGCCTCCAACACGGCCCTGGCACGATGGCTCCCTCCAGTCT CGCCTCCAACACGGCCCTGGCATGATGGCTCCCTCCAGTCT < 41bp 0.832076019015268 0.604825695279072 0.07949135 0.07215455 prediction 0.454500647472391 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1457504 chr2:1457506 stopgain 0.021 1 23 hm5C_associated_SNPs_76859 0 0 0 0 2 TPO chr2:1457595 5'GT 1457595 Upstream 90bp
chr5 139192916 139192916 1 + G A BLCA 139192913 + 139192893 139192933 41 GGTTGGATGGTCCCGGGGAGCCAGATGTGCGGGATGGCTTC GGTTGGATGGTCCCGGGGAGCCAAATGTGCGGGATGGCTTC < 41bp 0.778760846776058 0.551518448978356 0.91867435 0.86813825 prediction 0.454484795595405 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139192913 chr5:139192916 nonsynonymous SNV 0.982 4 24 hm5C_associated_SNPs_76862 0 0 0 0 1 PSD2 chr5:139192894 3'AG 139192894 Downstream 23bp
chr7 128399055 128399055 1 + T C UCEC 128399054 + 128399034 128399074 41 GTTCACAGCTTTCCTGCACCCTGAGGAGTATGACTACATGA GTTCACAGCTTTCCTGCACCCCGAGGAGTATGACTACATGA < 41bp 0.766415983471916 0.539176172503638 0.17696035 0.18347135 prediction 0.454479621936554 Functional Loss - CALU ENSG00000128595 CDS Human protein_coding chr7:128399054 chr7:128399055 synonymous SNV . 0 22 hm5C_associated_SNPs_76863 0 0 1 0 1 CALU chr7:128399091 5'GT 128399091 Upstream 37bp
chr6 108502092 108502092 1 + G A COAD 108502089 + 108502069 108502109 41 GGCTTTACAAGAGGTGGTGGCTCGATTTAGACAACTCCGGT GGCTTTACAAGAGGTGGTGGCTCAATTTAGACAACTCCGGT < 41bp 0.730464802617954 0.503225017335653 0.07819879 0.06627408 prediction 0.454479570564602 Functional Loss - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108502089 chr6:108502092 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_76864 0 0 0 0 2 NR2E1 chr6:108502011 3'AG 108502011 Downstream 82bp
chr6 108502092 108502092 1 + G A COAD 108502089 + 108502069 108502109 41 GGCTTTACAAGAGGTGGTGGCTCGATTTAGACAACTCCGGT GGCTTTACAAGAGGTGGTGGCTCAATTTAGACAACTCCGGT < 41bp 0.730464802617954 0.503225017335653 0.07819879 0.06627408 prediction 0.454479570564602 Functional Loss - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108502089 chr6:108502092 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_76864 0 0 0 0 2 NR2E1 chr6:108502160 5'GT 108502160 Upstream 69bp
chr19 55085962 55085962 1 + T C rs150302738 55085961 + 55085941 55085981 41 TTCCCCATCCCATCCATCACCTGGGAACACGCAGGGCGGTA TTCCCCATCCCATCCATCACCCGGGAACACGCAGGGCGGTA < 41bp 0.753080815016401 0.525845356971788 0.7713358 0.76409245 prediction 0.454470916089225 Functional Loss - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55085961 chr19:55085962 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_76866 0 0 0 0 1 LILRA2 chr19:55086049 5'GT 55086049 Upstream 88bp
chr16 89790059 89790059 1 + G A rs4516230 89790056 + 89790036 89790076 41 CAGCCTCCTTCGGACAGCGACGCGGTGGGGCCCAGGTCGGG CAGCCTCCTTCGGACAGCGACGCAGTGGGGCCCAGGTCGGG < 41bp 0.727234621891167 0.486628815494161 0.745167 0.49732554 prediction 0.454469243782334 Functional Loss - ZNF276 ENSG00000158805 CDS Human protein_coding chr16:89790056 chr16:89790059 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_76867 0 0 0 0 1 ZNF276 chr16:89790117 5'GT 89790117 Upstream 59bp
chr17 7605786 7605786 1 + C T LUSC 7605784 + 7605764 7605804 41 CCTGGGATGATGGCTCCCCTCTCGCCTTGCTGGGAGGGCAC CCTGGGATGATGGCTCCCCTCTTGCCTTGCTGGGAGGGCAC < 41bp 0.825854120477223 0.598619899346556 0.3979119 0.1675832 prediction 0.454468442261335 Functional Loss - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7605784 chr17:7605786 synonymous SNV . 0 23 hm5C_associated_SNPs_76868 0 0 1 0 1 WRAP53 chr17:7605870 5'GT 7605870 Upstream 85bp
chr19 36276380 36276380 1 + G T LUAD 36276378 + 36276358 36276398 41 TCTCTGTCATCGCAGGCCAGCGGGGCTGGTGAGCAAGGCGG TCTCTGTCATCGCAGGCCAGCGTGGCTGGTGAGCAAGGCGG < 41bp 0.72723220388498 0.368566981190552 0.91475374 0.81121814 prediction 0.454464407769959 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36276378 chr19:36276380 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_76869 0 0 1 0 2 ARHGAP33 chr19:36276311 3'AG 36276311 Downstream 70bp
chr19 36276380 36276380 1 + G T LUAD 36276378 + 36276358 36276398 41 TCTCTGTCATCGCAGGCCAGCGGGGCTGGTGAGCAAGGCGG TCTCTGTCATCGCAGGCCAGCGTGGCTGGTGAGCAAGGCGG < 41bp 0.72723220388498 0.368566981190552 0.91475374 0.81121814 prediction 0.454464407769959 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36276378 chr19:36276380 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_76869 0 0 1 0 2 ARHGAP33 chr19:36276385 5'GT 36276385 Upstream 6bp
chr19 36149530 36149530 1 + C T STAD 36149528 + 36149508 36149548 41 GATGAGCAACGGGCTGAAGGCACGTTTCCCGGGAAGATCTG GATGAGCAACGGGCTGAAGGCATGTTTCCCGGGAAGATCTG < 41bp 0.818493771983488 0.591262725091017 0.04631251 0.05823061 prediction 0.454462093784942 Functional Loss - COX6B1 ENSG00000126267 CDS Human protein_coding chr19:36149528 chr19:36149530 nonsynonymous SNV 0.946 2 23 hm5C_associated_SNPs_76870 0 0 1 0 1 COX6B1 chr19:36149496 3'AG 36149496 Downstream 35bp
chr13 25264762 25264762 1 + G A COAD 25264759 + 25264739 25264779 41 TAGGTGGATAACTCATCTCTCACGGGGGAGTCTGAGCCCCA TAGGTGGATAACTCATCTCTCACAGGGGAGTCTGAGCCCCA < 41bp 0.774913855917552 0.547687589194585 0.93573684 0.6809184 prediction 0.454452533445935 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25264759 chr13:25264762 synonymous SNV . 0 24 hm5C_associated_SNPs_76872 0 0 0 0 2 ATP12A chr13:25264742 3'AG 25264742 Downstream 21bp
chr13 25264762 25264762 1 + G A COAD 25264759 + 25264739 25264779 41 TAGGTGGATAACTCATCTCTCACGGGGGAGTCTGAGCCCCA TAGGTGGATAACTCATCTCTCACAGGGGAGTCTGAGCCCCA < 41bp 0.774913855917552 0.547687589194585 0.93573684 0.6809184 prediction 0.454452533445935 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25264759 chr13:25264762 synonymous SNV . 0 24 hm5C_associated_SNPs_76872 0 0 0 0 2 ATP12A chr13:25264859 5'GT 25264859 Upstream 98bp
chr1 247586625 247586625 1 + G A COAD 247586622 + 247586602 247586642 41 GGGTTTACTGGAGTACCTTTCGAGAATCTCTATTTGTAAAA GGGTTTACTGGAGTACCTTTCGAAAATCTCTATTTGTAAAA < 41bp 0.778059853526703 0.550835257361831 0.8965801 0.8469967 prediction 0.454449192329743 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247586622 chr1:247586625 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_76874 0 0 0 0 2 NLRP3 chr1:247586532 3'AG 247586532 Downstream 94bp
chr1 247586625 247586625 1 + G A COAD 247586622 + 247586602 247586642 41 GGGTTTACTGGAGTACCTTTCGAGAATCTCTATTTGTAAAA GGGTTTACTGGAGTACCTTTCGAAAATCTCTATTTGTAAAA < 41bp 0.778059853526703 0.550835257361831 0.8965801 0.8469967 prediction 0.454449192329743 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247586622 chr1:247586625 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_76874 0 0 0 0 2 NLRP3 chr1:247586651 5'GT 247586651 Upstream 27bp
chr5 75979002 75979002 1 + G T LUAD 75979000 + 75978980 75979020 41 ATGACTTACTGAGTGAATTGCTGGGGTCGCTGGGAGAGGTG ATGACTTACTGAGTGAATTGCTTGGGTCGCTGGGAGAGGTG < 41bp 0.727219258943934 0.383811925689388 0.86395895 0.25481692 prediction 0.454438517887869 Functional Loss - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75979000 chr5:75979002 synonymous SNV . 0 23 hm5C_associated_SNPs_76878 0 0 1 0 2 IQGAP2 chr5:75978940 3'AG 75978940 Downstream 63bp
chr5 75979002 75979002 1 + G T LUAD 75979000 + 75978980 75979020 41 ATGACTTACTGAGTGAATTGCTGGGGTCGCTGGGAGAGGTG ATGACTTACTGAGTGAATTGCTTGGGTCGCTGGGAGAGGTG < 41bp 0.727219258943934 0.383811925689388 0.86395895 0.25481692 prediction 0.454438517887869 Functional Loss - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75979000 chr5:75979002 synonymous SNV . 0 23 hm5C_associated_SNPs_76878 0 0 1 0 2 IQGAP2 chr5:75979042 5'GT 75979042 Upstream 41bp
chr5 75979003 75979003 1 + G A OV 75979000 + 75978980 75979020 41 ATGACTTACTGAGTGAATTGCTGGGGTCGCTGGGAGAGGTG ATGACTTACTGAGTGAATTGCTGAGGTCGCTGGGAGAGGTG < 41bp 0.727219258943934 0.485690354571066 0.86395895 0.54976207 prediction 0.454438517887869 Functional Loss - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75979000 chr5:75979003 nonsynonymous SNV 0.020 2 24 hm5C_associated_SNPs_76879 0 0 1 0 2 IQGAP2 chr5:75978940 3'AG 75978940 Downstream 64bp
chr5 75979003 75979003 1 + G A OV 75979000 + 75978980 75979020 41 ATGACTTACTGAGTGAATTGCTGGGGTCGCTGGGAGAGGTG ATGACTTACTGAGTGAATTGCTGAGGTCGCTGGGAGAGGTG < 41bp 0.727219258943934 0.485690354571066 0.86395895 0.54976207 prediction 0.454438517887869 Functional Loss - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75979000 chr5:75979003 nonsynonymous SNV 0.020 2 24 hm5C_associated_SNPs_76879 0 0 1 0 2 IQGAP2 chr5:75979042 5'GT 75979042 Upstream 40bp
chr1 87104605 87104605 1 + C T OV 87104603 + 87104583 87104623 41 CAAGGGGGCCAGCTGTATAGCACGACCATTCAGACGTGACT CAAGGGGGCCAGCTGTATAGCATGACCATTCAGACGTGACT < 41bp 0.727216413860381 0.493474031248652 0.035075247 0.04288113 prediction 0.454432827720761 Functional Loss - CLCA3P ENSG00000153923 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:87104603 chr1:87104605 . . 0 23 hm5C_associated_SNPs_76880 0 0 0 0 1 CLCA3P chr1:87104541 3'AG 87104541 Downstream 65bp
chr2 132289309 132289309 1 + T C COAD 132289308 + 132289288 132289328 41 ACGTCTCCCAGAAGGCGGACCTGGAAGAGGAGCCCCTACTT ACGTCTCCCAGAAGGCGGACCCGGAAGAGGAGCCCCTACTT < 41bp 0.810504929334212 0.583289843090045 0.43492252 0.67850554 prediction 0.454430172488334 Functional Loss - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132289308 chr2:132289309 nonsynonymous SNV 0.086 3 22 hm5C_associated_SNPs_76881 0 0 1 0 2 CCDC74A chr2:132289237 3'AG 132289237 Downstream 73bp
chr2 132289309 132289309 1 + T C COAD 132289308 + 132289288 132289328 41 ACGTCTCCCAGAAGGCGGACCTGGAAGAGGAGCCCCTACTT ACGTCTCCCAGAAGGCGGACCCGGAAGAGGAGCCCCTACTT < 41bp 0.810504929334212 0.583289843090045 0.43492252 0.67850554 prediction 0.454430172488334 Functional Loss - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132289308 chr2:132289309 nonsynonymous SNV 0.086 3 22 hm5C_associated_SNPs_76881 0 0 1 0 2 CCDC74A chr2:132289375 5'GT 132289375 Upstream 67bp
chr14 102918826 102918826 1 + G A CESC 102918823 + 102918803 102918843 41 CCTCCACGGTGCAGCTGCCTCCCGAAGCCGAGATGCGCGCC CCTCCACGGTGCAGCTGCCTCCCAAAGCCGAGATGCGCGCC < 41bp 0.776831552220202 0.54961665173759 0.52827597 0.17589748 prediction 0.454429800965224 Functional Loss - TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102918823 chr14:102918826 nonsynonymous SNV 0.031 1 24 hm5C_associated_SNPs_76882 0 0 0 0 1 TECPR2 chr14:102918731 3'AG 102918731 Downstream 96bp
chr2 27730607 27730607 1 + G A STAD 27730604 + 27730584 27730624 41 ACTTCCATCCTTCCCTCTCTCACGGAAATCGATACTGTGGT ACTTCCATCCTTCCCTCTCTCACAGAAATCGATACTGTGGT < 41bp 0.783588170109217 0.556374018894424 0.44600403 0.12772328 prediction 0.454428302429585 Functional Loss - GCKR ENSG00000084734 CDS Human protein_coding chr2:27730604 chr2:27730607 synonymous SNV . 0 24 hm5C_associated_SNPs_76883 0 0 1 0 1 GCKR chr2:27730644 5'GT 27730644 Upstream 38bp
chr19 52877610 52877610 1 + G T UCEC 52877608 + 52877588 52877628 41 TGGAGCAAAGGAGAGATCCCCGGAATCTGCAGAGTGAAGTG TGGAGCAAAGGAGAGATCCCCGTAATCTGCAGAGTGAAGTG < 41bp 0.897969721839537 0.670760221366004 0.90876603 0.5341697 prediction 0.454419000947065 Functional Loss - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52877608 chr19:52877610 synonymous SNV . 0 23 hm5C_associated_SNPs_76886 0 0 1 0 3 ZNF880 chr19:52877552 3'AG 52877552 Downstream 59bp
chr19 52877610 52877610 1 + G T UCEC 52877608 + 52877588 52877628 41 TGGAGCAAAGGAGAGATCCCCGGAATCTGCAGAGTGAAGTG TGGAGCAAAGGAGAGATCCCCGTAATCTGCAGAGTGAAGTG < 41bp 0.897969721839537 0.670760221366004 0.90876603 0.5341697 prediction 0.454419000947065 Functional Loss - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52877608 chr19:52877610 synonymous SNV . 0 23 hm5C_associated_SNPs_76886 0 0 1 0 3 ZNF880 chr19:52877647 5'GT 52877647 Upstream 38bp
chr19 52877610 52877610 1 + G T UCEC 52877608 + 52877588 52877628 41 TGGAGCAAAGGAGAGATCCCCGGAATCTGCAGAGTGAAGTG TGGAGCAAAGGAGAGATCCCCGTAATCTGCAGAGTGAAGTG < 41bp 0.897969721839537 0.670760221366004 0.90876603 0.5341697 prediction 0.454419000947065 Functional Loss - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52877608 chr19:52877610 synonymous SNV . 0 23 hm5C_associated_SNPs_76886 0 0 1 0 3 ZNF880 chr19:52877680 5'GT 52877680 Upstream 71bp
chr1 161089011 161089011 1 + G T UCEC 161089009 + 161088989 161089029 41 CATCGACGCCAGACAAGCAACAGAACTTTAAAACATGTGCT CATCGACGCCAGACAAGCAACATAACTTTAAAACATGTGCT < 41bp 0.727208271307606 0.386418588522754 0.13029611 0.10431737 prediction 0.454416542615211 Functional Loss - NIT1 ENSG00000158793 CDS Human protein_coding chr1:161089009 chr1:161089011 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_76888 0 0 1 0 1 NIT1 chr1:161088924 3'AG 161088924 Downstream 88bp
chr16 4385127 4385127 1 + G A LUAD 4385124 + 4385104 4385144 41 TCAACGATTACCATGTCAAGCCCGAGAAGGATGCGGGGTAC TCAACGATTACCATGTCAAGCCCAAGAAGGATGCGGGGTAC < 41bp 0.758420932345058 0.53121340518216 0.3293712 0.1346964 prediction 0.454415054325797 Functional Loss - GLIS2 ENSG00000126603 CDS Human protein_coding chr16:4385124 chr16:4385127 nonsynonymous SNV 0.960 3 24 hm5C_associated_SNPs_76890 0 0 0 0 1 GLIS2 chr16:4385194 5'GT 4385194 Upstream 68bp
chr9 134038531 134038531 1 + G A UCEC 134038528 + 134038508 134038548 41 ACTTCCCTGTGGAGCCTGTCCTCGGCTGTTCCTTCCCAGAG ACTTCCCTGTGGAGCCTGTCCTCAGCTGTTCCTTCCCAGAG < 41bp 0.778846135157761 0.551640943869294 0.33829713 0.19500163 prediction 0.454410382576935 Functional Loss - NUP214 ENSG00000126883 CDS Human protein_coding chr9:134038528 chr9:134038531 synonymous SNV . 0 24 hm5C_associated_SNPs_76892 0 0 1 0 1 NUP214 chr9:134038560 5'GT 134038560 Upstream 30bp
chr2 138771444 138771444 1 + T C STAD 138771443 + 138771423 138771463 41 CAGATGACCTCACTCAGATGCTGGACAACCTAGGGCTTAAG CAGATGACCTCACTCAGATGCCGGACAACCTAGGGCTTAAG < 41bp 0.772933027436475 0.5457303319823 0.31070822 0.24543118 prediction 0.45440539090835 Functional Loss - HNMT ENSG00000150540 CDS Human protein_coding chr2:138771443 chr2:138771444 nonsynonymous SNV 0.650 4 22 hm5C_associated_SNPs_76893 1 0 1 0 1 HNMT chr2:138771345 3'AG 138771345 Downstream 100bp
chr16 816923 816923 1 + G A SKCM 816920 + 816900 816940 41 GGACCTGGACACGTGTGACCCAAGGCAGCTGGACGTCCTCT GGACCTGGACACGTGTGACCCAAAGCAGCTGGACGTCCTCT < 41bp 0.727196957023903 0.476679587278407 0.85400397 0.4846525 prediction 0.454393914047805 Functional Loss - MSLN ENSG00000102854 CDS Human protein_coding chr16:816920 chr16:816923 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_76895 0 0 0 0 2 MSLN chr16:816885 3'AG 816885 Downstream 39bp
chr16 816923 816923 1 + G A SKCM 816920 + 816900 816940 41 GGACCTGGACACGTGTGACCCAAGGCAGCTGGACGTCCTCT GGACCTGGACACGTGTGACCCAAAGCAGCTGGACGTCCTCT < 41bp 0.727196957023903 0.476679587278407 0.85400397 0.4846525 prediction 0.454393914047805 Functional Loss - MSLN ENSG00000102854 CDS Human protein_coding chr16:816920 chr16:816923 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_76895 0 0 0 0 2 MSLN chr16:817012 5'GT 817012 Upstream 90bp
chr19 55897765 55897765 1 + T C COAD 55897764 + 55897744 55897784 41 TGGATGGTCGTGCGGAACTGCTCCAGTTTCCTGATCAAGAG TGGATGGTCGTGCGGAACTGCCCCAGTTTCCTGATCAAGAG < 41bp 0.820517832916209 0.593326201063139 0.88457334 0.1008656 prediction 0.454383263706141 Functional Loss - RPL28 ENSG00000108107 CDS Human protein_coding chr19:55897764 chr19:55897765 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_76897 0 0 1 0 2 RPL28 chr19:55897718 3'AG 55897718 Downstream 48bp
chr19 55897765 55897765 1 + T C COAD 55897764 + 55897744 55897784 41 TGGATGGTCGTGCGGAACTGCTCCAGTTTCCTGATCAAGAG TGGATGGTCGTGCGGAACTGCCCCAGTTTCCTGATCAAGAG < 41bp 0.820517832916209 0.593326201063139 0.88457334 0.1008656 prediction 0.454383263706141 Functional Loss - RPL28 ENSG00000108107 CDS Human protein_coding chr19:55897764 chr19:55897765 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_76897 0 0 1 0 2 RPL28 chr19:55897806 5'GT 55897806 Upstream 42bp
chr17 33498383 33498383 1 + G A SKCM 33498380 + 33498360 33498400 41 TGTACTCGGTGGCCACCACCCTGGTGAACTGCACCAACAGC TGTACTCGGTGGCCACCACCCTGATGAACTGCACCAACAGC < 41bp 0.727191583770553 0.481171622645569 0.18245593 0.07165286 prediction 0.454383167541106 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33498380 chr17:33498383 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_76898 0 0 0 0 2 UNC45B chr17:33498341 3'AG 33498341 Downstream 43bp
chr17 33498383 33498383 1 + G A SKCM 33498380 + 33498360 33498400 41 TGTACTCGGTGGCCACCACCCTGGTGAACTGCACCAACAGC TGTACTCGGTGGCCACCACCCTGATGAACTGCACCAACAGC < 41bp 0.727191583770553 0.481171622645569 0.18245593 0.07165286 prediction 0.454383167541106 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33498380 chr17:33498383 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_76898 0 0 0 0 2 UNC45B chr17:33498481 5'GT 33498481 Upstream 99bp
chr10 45940992 45940992 1 + G C LUAD 45940991 + 45940971 45941011 41 TACCCAGAAGAGCATTTTATCGAGAAGCCTGTGAAGGAAGC TACCCAGAAGAGCATTTTATCCAGAAGCCTGTGAAGGAAGC < 41bp 0.882487730367014 0.655297312317839 0.8805555 0.35681826 prediction 0.45438083609835 Functional Loss - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45940991 chr10:45940992 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_76899 0 0 0 0 1 ALOX5 chr10:45940956 3'AG 45940956 Downstream 37bp
chr14 94578004 94578004 1 + G T LUSC 94578001 + 94577981 94578021 41 AGTTGAGGATCTCTTACTCTCTAGGCCACGGAATTAACCCG AGTTGAGGATCTCTTACTCTCTATGCCACGGAATTAACCCG < 41bp 0.727189355306656 0.427080440543195 0.27554142 0.11067724 prediction 0.454378710613312 Functional Loss - IFI27 ENSG00000165949 splicing Human protein_coding chr14:94578001 chr14:94578004 . . 0 24 hm5C_associated_SNPs_76900 0 0 0 0 1 IFI27 chr14:94577971 3'AG 94577971 Downstream 34bp
chrX 35938099 35938099 1 + G A SKCM 35938096 + 35938076 35938116 41 GCCGGGAGGGTGTACCGCCTCCCGATTACTGTGCATAATAT GCCGGGAGGGTGTACCGCCTCCCAATTACTGTGCATAATAT < 41bp 0.764050271958113 0.53686125762931 0.250435 0.2514068 prediction 0.454378028657606 Functional Loss - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35938096 chrX:35938099 synonymous SNV . 0 24 hm5C_associated_SNPs_76901 0 0 0 0 1 CFAP47 chrX:35938165 5'GT 35938165 Upstream 67bp
chr16 78056575 78056575 1 + G T LUSC 78056572 + 78056552 78056592 41 TCCTGGTGATCACCTTACTCCTGGACCAGACCACCAGCCAC TCCTGGTGATCACCTTACTCCTGTACCAGACCACCAGCCAC < 41bp 0.921819847228418 0.694631260987994 0.36703426 0.17716679 prediction 0.45437717248085 Functional Loss - CLEC3A ENSG00000166509 CDS Human protein_coding chr16:78056572 chr16:78056575 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_76902 0 0 0 0 1 CLEC3A chr16:78056638 5'GT 78056638 Upstream 64bp
chr12 21196337 21196337 1 + G A SKCM 21196334 + 21196314 21196354 41 GTGGCTTGGTTTCCTTGTGTCTGGAATAGTATCCATTATTT GTGGCTTGGTTTCCTTGTGTCTGAAATAGTATCCATTATTT < 41bp 0.744393266746468 0.517205004910445 0.11347711 0.055248052 prediction 0.454376523672046 Functional Loss - SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21196334 chr12:21196337 nonsynonymous SNV 0.053 3 24 hm5C_associated_SNPs_76903 0 0 0 0 1 SLCO1B7 chr12:21196268 3'AG 21196268 Downstream 70bp
chr22 46719098 46719098 1 + G A SKCM 46719095 + 46719075 46719115 41 TCTTGGACTTAGGTGACTCCCCGGACAGCTCAACACCAAAG TCTTGGACTTAGGTGACTCCCCGAACAGCTCAACACCAAAG < 41bp 0.781657208225836 0.55447829642114 0.36097366 0.224531 prediction 0.454357823609392 Functional Loss - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46719095 chr22:46719098 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_76906 0 0 1 0 2 GTSE1 chr22:46719087 3'AG 46719087 Downstream 12bp
chr22 46719098 46719098 1 + G A SKCM 46719095 + 46719075 46719115 41 TCTTGGACTTAGGTGACTCCCCGGACAGCTCAACACCAAAG TCTTGGACTTAGGTGACTCCCCGAACAGCTCAACACCAAAG < 41bp 0.781657208225836 0.55447829642114 0.36097366 0.224531 prediction 0.454357823609392 Functional Loss - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46719095 chr22:46719098 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_76906 0 0 1 0 2 GTSE1 chr22:46719159 5'GT 46719159 Upstream 62bp
chr2 185798405 185798405 1 + G T COAD 185798402 + 185798382 185798422 41 CCAGGAAAGATGAAAGAAAACAGGAAAAGGCACTCCAACGC CCAGGAAAGATGAAAGAAAACAGTAAAAGGCACTCCAACGC < 41bp 0.910963566371019 0.68378515019155 0.61148095 0.29878765 prediction 0.454356832358937 Functional Loss - ZNF804A ENSG00000170396 CDS Human protein_coding chr2:185798402 chr2:185798405 stopgain 1.000 1 24 hm5C_associated_SNPs_76907 0 0 0 0 2 ZNF804A chr2:185798330 3'AG 185798330 Downstream 76bp
chr2 185798405 185798405 1 + G T COAD 185798402 + 185798382 185798422 41 CCAGGAAAGATGAAAGAAAACAGGAAAAGGCACTCCAACGC CCAGGAAAGATGAAAGAAAACAGTAAAAGGCACTCCAACGC < 41bp 0.910963566371019 0.68378515019155 0.61148095 0.29878765 prediction 0.454356832358937 Functional Loss - ZNF804A ENSG00000170396 CDS Human protein_coding chr2:185798402 chr2:185798405 stopgain 1.000 1 24 hm5C_associated_SNPs_76907 0 0 0 0 2 ZNF804A chr2:185798460 5'GT 185798460 Upstream 56bp
chr17 79857807 79857807 1 + G A COAD 79857804 + 79857784 79857824 41 TCCCCTCCGTAGGCAAGGTGCCCGGCGACGACTGCCCGCTG TCCCCTCCGTAGGCAAGGTGCCCAGCGACGACTGCCCGCTG < 41bp 0.75574053653908 0.528565196247542 0.4974603 0.14571321 prediction 0.454350680583075 Functional Loss - ANAPC11 ENSG00000141552 CDS Human protein_coding chr17:79857804 chr17:79857807 nonsynonymous SNV 0.852 0 24 hm5C_associated_SNPs_76908 0 0 1 0 1 ANAPC11 chr17:79857796 3'AG 79857796 Downstream 12bp
chr6 131992466 131992466 1 + C T SARC 131992464 + 131992444 131992484 41 CCAAATCATTACACCATTGTCACGGTAAGTGCTTGACCCAG CCAAATCATTACACCATTGTCATGGTAAGTGCTTGACCCAG < 41bp 0.789625294303358 0.562453694175078 0.8391415 0.8305685 prediction 0.454343200256561 Functional Loss - ENPP3 ENSG00000154269 CDS Human protein_coding chr6:131992464 chr6:131992466 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_76911 0 0 1 3 2 ENPP3 chr6:131992388 3'AG 131992388 Downstream 79bp
chr6 131992466 131992466 1 + C T SARC 131992464 + 131992444 131992484 41 CCAAATCATTACACCATTGTCACGGTAAGTGCTTGACCCAG CCAAATCATTACACCATTGTCATGGTAAGTGCTTGACCCAG < 41bp 0.789625294303358 0.562453694175078 0.8391415 0.8305685 prediction 0.454343200256561 Functional Loss - ENPP3 ENSG00000154269 CDS Human protein_coding chr6:131992464 chr6:131992466 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_76911 0 0 1 3 2 ENPP3 chr6:131992467 5'GT 131992467 Upstream 2bp
chr10 134014436 134014436 1 + G A rs142778760 134014433 + 134014413 134014453 41 GACAACTTCGCGCTGATCCCCGAGGGCACCAACGGCATTGA GACAACTTCGCGCTGATCCCCGAAGGCACCAACGGCATTGA < 41bp 0.793788538981876 0.566617374391579 0.8775623 0.81678206 prediction 0.454342329180596 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134014433 chr10:134014436 synonymous SNV . 0 24 hm5C_associated_SNPs_76912 0 0 0 0 2 DPYSL4 chr10:134014346 3'AG 134014346 Downstream 91bp
chr10 134014436 134014436 1 + G A rs142778760 134014433 + 134014413 134014453 41 GACAACTTCGCGCTGATCCCCGAGGGCACCAACGGCATTGA GACAACTTCGCGCTGATCCCCGAAGGCACCAACGGCATTGA < 41bp 0.793788538981876 0.566617374391579 0.8775623 0.81678206 prediction 0.454342329180596 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134014433 chr10:134014436 synonymous SNV . 0 24 hm5C_associated_SNPs_76912 0 0 0 0 2 DPYSL4 chr10:134014487 5'GT 134014487 Upstream 52bp
chr8 133906122 133906122 1 + G A STAD 133906119 + 133906099 133906139 41 TTCCCGCCCCGGGAGGCTTTCGCGGAGCAGTTTCTGCGTGG TTCCCGCCCCGGGAGGCTTTCGCAGAGCAGTTTCTGCGTGG < 41bp 0.775281990005439 0.548111962161945 0.9305848 0.7978244 prediction 0.454340055686987 Functional Loss - TG ENSG00000042832 CDS Human protein_coding chr8:133906119 chr8:133906122 synonymous SNV . 0 24 hm5C_associated_SNPs_76913 0 0 0 0 1 TG chr8:133906174 5'GT 133906174 Upstream 53bp
chr11 64064635 64064635 1 + T C COAD 64064634 + 64064614 64064654 41 ACAGATGCCGGGCGCCTCTTCTGCATCTTTTATGCGCTGGT ACAGATGCCGGGCGCCTCTTCCGCATCTTTTATGCGCTGGT < 41bp 0.795854737438471 0.568688644785025 0.3403501 0.39415458 prediction 0.454332185306892 Functional Loss - KCNK4 ENSG00000182450 CDS Human protein_coding chr11:64064634 chr11:64064635 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_76916 0 0 0 0 1 KCNK4 chr11:64064591 3'AG 64064591 Downstream 45bp
chr16 58538152 58538152 1 + G T UCEC 58538150 + 58538130 58538170 41 ACGTGGATGCCCCTGGACAACAGGTGGGGGCGTCGCAGTTT ACGTGGATGCCCCTGGACAACATGTGGGGGCGTCGCAGTTT < 41bp 0.899783566606232 0.672618706699698 0.9013698 0.6107573 prediction 0.454329719813068 Functional Loss - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58538150 chr16:58538152 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_76919 0 0 0 0 2 NDRG4 chr16:58538058 3'AG 58538058 Downstream 95bp
chr16 58538152 58538152 1 + G T UCEC 58538150 + 58538130 58538170 41 ACGTGGATGCCCCTGGACAACAGGTGGGGGCGTCGCAGTTT ACGTGGATGCCCCTGGACAACATGTGGGGGCGTCGCAGTTT < 41bp 0.899783566606232 0.672618706699698 0.9013698 0.6107573 prediction 0.454329719813068 Functional Loss - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58538150 chr16:58538152 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_76919 0 0 0 0 2 NDRG4 chr16:58538178 5'GT 58538178 Upstream 27bp
chr5 148632354 148632354 1 + G A LUAD 148632351 + 148632331 148632371 41 TGAACTGCTGCTGGTGACTACAAGAGGAAGAAACCGACTGC TGAACTGCTGCTGGTGACTACAAAAGGAAGAAACCGACTGC < 41bp 0.730547023504884 0.503383629265357 0.56991935 0.16231698 prediction 0.454326788479054 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148632351 chr5:148632354 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_76920 0 0 1 0 2 ABLIM3 chr5:148632320 3'AG 148632320 Downstream 35bp
chr5 148632354 148632354 1 + G A LUAD 148632351 + 148632331 148632371 41 TGAACTGCTGCTGGTGACTACAAGAGGAAGAAACCGACTGC TGAACTGCTGCTGGTGACTACAAAAGGAAGAAACCGACTGC < 41bp 0.730547023504884 0.503383629265357 0.56991935 0.16231698 prediction 0.454326788479054 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148632351 chr5:148632354 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_76920 0 0 1 0 2 ABLIM3 chr5:148632400 5'GT 148632400 Upstream 47bp
chr2 184024289 184024289 1 + T C UCEC 184024288 + 184024268 184024308 41 TTACACCACCAATCAAAACTCTAGGTACACCAACACAACCT TTACACCACCAATCAAAACTCCAGGTACACCAACACAACCT < 41bp 0.788410805877381 0.561247875439902 0.115359575 0.27325356 prediction 0.454325860874958 Functional Loss - NUP35 ENSG00000163002 CDS Human protein_coding chr2:184024288 chr2:184024289 nonsynonymous SNV 0.969 0 22 hm5C_associated_SNPs_76921 0 0 1 0 1 NUP35 chr2:184024380 5'GT 184024380 Upstream 92bp
chr7 148483671 148483671 1 + G A BLCA 148483668 + 148483648 148483688 41 AGAACCCAGAGGAGGCAGAACTAGAAGACACACTCAATCAA AGAACCCAGAGGAGGCAGAACTAAAAGACACACTCAATCAA < 41bp 0.727158876785421 0.48855568171688 0.2485317 0.21527138 prediction 0.454317753570842 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148483668 chr7:148483671 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_76923 0 0 1 0 2 CUL1 chr7:148483643 3'AG 148483643 Downstream 29bp
chr7 148483671 148483671 1 + G A BLCA 148483668 + 148483648 148483688 41 AGAACCCAGAGGAGGCAGAACTAGAAGACACACTCAATCAA AGAACCCAGAGGAGGCAGAACTAAAAGACACACTCAATCAA < 41bp 0.727158876785421 0.48855568171688 0.2485317 0.21527138 prediction 0.454317753570842 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148483668 chr7:148483671 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_76923 0 0 1 0 2 CUL1 chr7:148483691 5'GT 148483691 Upstream 21bp
chr6 134210976 134210976 1 + G A rs78733835 134210973 + 134210953 134210993 41 TACGAGAACGGGTACATTCACCCGGTCAACCTGGTGAGTGC TACGAGAACGGGTACATTCACCCAGTCAACCTGGTGAGTGC < 41bp 0.727157403658225 0.483698241409684 0.52971154 0.17444474 prediction 0.45431480731645 Functional Loss - TCF21 ENSG00000118526 CDS Human protein_coding chr6:134210973 chr6:134210976 synonymous SNV . 0 24 hm5C_associated_SNPs_76925 0 0 0 0 1 TCF21 chr6:134210985 5'GT 134210985 Upstream 10bp
chr14 76964613 76964613 1 + G A SKCM 76964610 + 76964590 76964630 41 AGAAGCTGCAGGACCTGCTGCACGAGGCACTGCAGGACTAC AGAAGCTGCAGGACCTGCTGCACAAGGCACTGCAGGACTAC < 41bp 0.780768123831841 0.553618005195679 0.37833184 0.29946503 prediction 0.454300237272324 Functional Loss - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76964610 chr14:76964613 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_76929 0 0 1 0 1 ESRRB chr14:76964557 3'AG 76964557 Downstream 57bp
chr7 31124418 31124418 1 + A C OV 31124417 + 31124397 31124437 41 AGCACATCCCTCGTCACCCTCACCACTGCCATGGTCATCCT AGCACATCCCTCGTCACCCTCCCCACTGCCATGGTCATCCT < 41bp 0.727142055409145 0.468007360085645 0.17896664 0.04590264 prediction 0.45428411081829 Functional Loss - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31124417 chr7:31124418 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_76931 0 0 0 0 2 ADCYAP1R1 chr7:31124352 3'AG 31124352 Downstream 67bp
chr7 31124418 31124418 1 + A C OV 31124417 + 31124397 31124437 41 AGCACATCCCTCGTCACCCTCACCACTGCCATGGTCATCCT AGCACATCCCTCGTCACCCTCCCCACTGCCATGGTCATCCT < 41bp 0.727142055409145 0.468007360085645 0.17896664 0.04590264 prediction 0.45428411081829 Functional Loss - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31124417 chr7:31124418 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_76931 0 0 0 0 2 ADCYAP1R1 chr7:31124449 5'GT 31124449 Upstream 32bp
chr8 104068114 104068114 1 + G A CESC 104068111 + 104068091 104068131 41 TGCAGGTTAAACCACAACGACTGGATTAAGCAGTATGAAAC TGCAGGTTAAACCACAACGACTGAATTAAGCAGTATGAAAC < 41bp 0.729813312031202 0.502672391204241 0.09983221 0.0393039 prediction 0.454281841653922 Functional Loss - ATP6V1C1 ENSG00000155097 CDS Human protein_coding chr8:104068111 chr8:104068114 stopgain 1.000 1 24 hm5C_associated_SNPs_76932 0 0 1 0 2 ATP6V1C1 chr8:104068096 3'AG 104068096 Downstream 19bp
chr8 104068114 104068114 1 + G A CESC 104068111 + 104068091 104068131 41 TGCAGGTTAAACCACAACGACTGGATTAAGCAGTATGAAAC TGCAGGTTAAACCACAACGACTGAATTAAGCAGTATGAAAC < 41bp 0.729813312031202 0.502672391204241 0.09983221 0.0393039 prediction 0.454281841653922 Functional Loss - ATP6V1C1 ENSG00000155097 CDS Human protein_coding chr8:104068111 chr8:104068114 stopgain 1.000 1 24 hm5C_associated_SNPs_76932 0 0 1 0 2 ATP6V1C1 chr8:104068164 5'GT 104068164 Upstream 51bp
chr7 100192761 100192761 1 + G A SKCM 100192758 + 100192738 100192778 41 GTATTTTGAGGTGCATACCCCAGGGGTGTATCGCGATCTCT GTATTTTGAGGTGCATACCCCAGAGGTGTATCGCGATCTCT < 41bp 0.78254901822767 0.555425536744765 0.94175655 0.92068326 prediction 0.454246962965809 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100192758 chr7:100192761 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_76937 0 0 0 0 2 FBXO24 chr7:100192725 3'AG 100192725 Downstream 37bp
chr7 100192761 100192761 1 + G A SKCM 100192758 + 100192738 100192778 41 GTATTTTGAGGTGCATACCCCAGGGGTGTATCGCGATCTCT GTATTTTGAGGTGCATACCCCAGAGGTGTATCGCGATCTCT < 41bp 0.78254901822767 0.555425536744765 0.94175655 0.92068326 prediction 0.454246962965809 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100192758 chr7:100192761 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_76937 0 0 0 0 2 FBXO24 chr7:100192846 5'GT 100192846 Upstream 86bp
chr17 7577518 7577518 1 - T A BRCA 7577522 - 7577502 7577542 41 AACCGGAGGCCCATCCTCACCATCATCACACTGGAAGACTC AACCGGAGGCCCATCCTCACCATCTTCACACTGGAAGACTC < 41bp 0.727111434268705 0.418073061961041 0.06403765 0.10579181 prediction 0.454222868537411 Functional Loss - TP53 ENSG00000141510 CDS Human protein_coding chr17:7577522 chr17:7577518 nonsynonymous SNV 0.948 4 25 hm5C_associated_SNPs_76942 7 0 1 0 1 TP53 chr17:7577608 3'AG 7577608 Downstream 91bp
chr14 55227114 55227114 1 + T C LUAD 55227113 + 55227093 55227133 41 CGGCCGGGGCCAGCGGGGGGCTCCAGCCGCACCAGCTGAGC CGGCCGGGGCCAGCGGGGGGCCCCAGCCGCACCAGCTGAGC < 41bp 0.727110020190186 0.469761154731421 0.89996964 0.49503806 prediction 0.454220040380372 Functional Loss - SAMD4A ENSG00000020577 CDS Human protein_coding chr14:55227113 chr14:55227114 nonsynonymous SNV 0.872 2 22 hm5C_associated_SNPs_76943 0 0 1 0 1 SAMD4A chr14:55227212 5'GT 55227212 Upstream 99bp
chr3 52518529 52518529 1 + G A SKCM 52518526 + 52518506 52518546 41 CCCACCCGCCCTGGTCTCTCCAGGAATCATGTTCGTTCAGG CCCACCCGCCCTGGTCTCTCCAGAAATCATGTTCGTTCAGG < 41bp 0.727107767515178 0.496028444489982 0.719741 0.2752273 prediction 0.454215535030356 Functional Loss - NISCH ENSG00000010322 CDS Human protein_coding chr3:52518526 chr3:52518529 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_76944 0 0 1 0 1 NISCH chr3:52518529 3'AG 52518529 Downstream 1bp
chr19 16976364 16976364 1 + C T COAD 16976362 + 16976342 16976382 41 GCACGTCGGAGGTGATCCAGCGCCGTGCCATTTATCGCATC GCACGTCGGAGGTGATCCAGCGTCGTGCCATTTATCGCATC < 41bp 0.727095276954472 0.452765362191015 0.36876166 0.3678787 prediction 0.454190553908945 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16976362 chr19:16976364 synonymous SNV . 0 23 hm5C_associated_SNPs_76947 0 0 1 0 1 SIN3B chr19:16976459 5'GT 16976459 Upstream 96bp
chr19 49055538 49055538 1 + C T rs527440291 49055536 + 49055516 49055556 41 GGGCCCGCCGAGCCCCAGATCCCGGGCTTGTGGGACACCTA GGGCCCGCCGAGCCCCAGATCCTGGGCTTGTGGGACACCTA < 41bp 0.727091299231484 0.499063200346544 0.88887715 0.68729395 prediction 0.454182598462968 Functional Loss - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49055536 chr19:49055538 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_76950 0 0 0 0 1 SULT2B1 chr19:49055580 5'GT 49055580 Upstream 43bp
chr20 34519296 34519296 1 + C T LUAD 34519293 + 34519273 34519313 41 CCAAGAAGATCGTGGCCACCCACCAGCTTCTTGGTGATGTG CCAAGAAGATCGTGGCCACCCACTAGCTTCTTGGTGATGTG < 41bp 0.746726851580305 0.519646685965365 0.11521697 0.074365705 prediction 0.454160331229879 Functional Loss - PHF20 ENSG00000025293 CDS Human protein_coding chr20:34519293 chr20:34519296 stopgain 1.000 1 24 hm5C_associated_SNPs_76953 0 0 0 0 1 PHF20 chr20:34519366 5'GT 34519366 Upstream 71bp
chr7 31682381 31682381 1 + A C UCEC 31682380 + 31682360 31682400 41 GCCACAGCTTAGTATCATCCCAGGACTGTCAGCTAGAGTCG GCCACAGCTTAGTATCATCCCCGGACTGTCAGCTAGAGTCG < 41bp 0.821498359047094 0.594425040677677 0.5607451 0.32063454 prediction 0.454146636738833 Functional Loss - CCDC129 ENSG00000180347 CDS Human protein_coding chr7:31682380 chr7:31682381 nonsynonymous SNV 0.042 3 22 hm5C_associated_SNPs_76954 0 0 0 0 1 CCDC129 chr7:31682296 3'AG 31682296 Downstream 86bp
chr6 26598535 26598535 1 + G A CESC 26598532 + 26598512 26598552 41 GGTCCCACCTCAGCGAGCACCTCGCCTTTGAGCGCCAGGTG GGTCCCACCTCAGCGAGCACCTCACCTTTGAGCGCCAGGTG < 41bp 0.762593448687311 0.535522782387442 0.087521106 0.10828927 prediction 0.454141332599739 Functional Loss - ABT1 ENSG00000146109 CDS Human protein_coding chr6:26598532 chr6:26598535 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_76955 0 0 1 0 1 ABT1 chr6:26598493 3'AG 26598493 Downstream 43bp
chr17 47587819 47587819 1 + C T rs2072446 47587817 + 47587797 47587837 41 CGGTCCACACCCCCAGAGGGCTCGGACAGCACAGCCCCCAG CGGTCCACACCCCCAGAGGGCTTGGACAGCACAGCCCCCAG < 41bp 0.727069301836357 0.456197570471516 0.11886352 0.10162845 prediction 0.454138603672714 Functional Loss - NGFR ENSG00000064300 CDS Human protein_coding chr17:47587817 chr17:47587819 nonsynonymous SNV 0.020 1 23 hm5C_associated_SNPs_76957 0 0 0 0 1 NGFR chr17:47587774 3'AG 47587774 Downstream 46bp
chr17 47587820 47587820 1 + G A COAD 47587817 + 47587797 47587837 41 CGGTCCACACCCCCAGAGGGCTCGGACAGCACAGCCCCCAG CGGTCCACACCCCCAGAGGGCTCAGACAGCACAGCCCCCAG < 41bp 0.727069301836357 0.476034462431888 0.11886352 0.07688859 prediction 0.454138603672714 Functional Loss - NGFR ENSG00000064300 CDS Human protein_coding chr17:47587817 chr17:47587820 synonymous SNV . 0 24 hm5C_associated_SNPs_76958 0 0 0 0 1 NGFR chr17:47587774 3'AG 47587774 Downstream 47bp
chr7 75608840 75608840 1 + G T UCEC 75608837 + 75608817 75608857 41 GAGTTTGCCAACCGCCTGTCCAAGGACGCCCACCGCTACGG GAGTTTGCCAACCGCCTGTCCAATGACGCCCACCGCTACGG < 41bp 0.727068396656627 0.311419615997246 0.7994677 0.43199575 prediction 0.454136793313254 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75608837 chr7:75608840 stopgain 1.000 4 24 hm5C_associated_SNPs_76959 0 0 1 0 2 POR chr7:75608769 3'AG 75608769 Downstream 72bp
chr7 75608840 75608840 1 + G T UCEC 75608837 + 75608817 75608857 41 GAGTTTGCCAACCGCCTGTCCAAGGACGCCCACCGCTACGG GAGTTTGCCAACCGCCTGTCCAATGACGCCCACCGCTACGG < 41bp 0.727068396656627 0.311419615997246 0.7994677 0.43199575 prediction 0.454136793313254 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75608837 chr7:75608840 stopgain 1.000 4 24 hm5C_associated_SNPs_76959 0 0 1 0 2 POR chr7:75608897 5'GT 75608897 Upstream 58bp
chr6 158485894 158485894 1 + C T COAD 158485892 + 158485872 158485912 41 GGATGGAGCCCGGTCCATGTCTCGAACCATCCAGTCCAACT GGATGGAGCCCGGTCCATGTCTTGAACCATCCAGTCCAACT < 41bp 0.858923574799538 0.631858482421961 0.80839485 0.006520599 prediction 0.454130184755154 Functional Loss - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158485892 chr6:158485894 stopgain 0.999 1 23 hm5C_associated_SNPs_76960 0 0 1 0 1 SYNJ2 chr6:158485858 3'AG 158485858 Downstream 37bp
chr17 10608264 10608264 1 + T C STAD 10608263 + 10608243 10608283 41 TATGGATGATAAACCCAATCCTGAAGCCCTAAGTGACAGTT TATGGATGATAAACCCAATCCCGAAGCCCTAAGTGACAGTT < 41bp 0.727063322264553 0.484711963972772 0.15366545 0.32006317 prediction 0.454126644529105 Functional Loss - ADPRM ENSG00000170222 CDS Human protein_coding chr17:10608263 chr17:10608264 synonymous SNV . 0 22 hm5C_associated_SNPs_76962 0 0 0 0 1 ADPRM chr17:10608227 3'AG 10608227 Downstream 38bp
chr20 36979265 36979265 1 + T C rs2232582 36979264 + 36979244 36979284 41 CTCTGCGCTGAGGCCTGTCCCTGGCCAGGGCCTGAGTCTCA CTCTGCGCTGAGGCCTGTCCCCGGCCAGGGCCTGAGTCTCA < 41bp 0.738372922293595 0.511309805784741 0.10136017 0.23744476 prediction 0.454126233017707 Functional Loss - LBP ENSG00000129988 CDS Human protein_coding chr20:36979264 chr20:36979265 synonymous SNV . 0 22 hm5C_associated_SNPs_76963 0 0 0 0 2 LBP chr20:36979214 3'AG 36979214 Downstream 52bp
chr20 36979265 36979265 1 + T C rs2232582 36979264 + 36979244 36979284 41 CTCTGCGCTGAGGCCTGTCCCTGGCCAGGGCCTGAGTCTCA CTCTGCGCTGAGGCCTGTCCCCGGCCAGGGCCTGAGTCTCA < 41bp 0.738372922293595 0.511309805784741 0.10136017 0.23744476 prediction 0.454126233017707 Functional Loss - LBP ENSG00000129988 CDS Human protein_coding chr20:36979264 chr20:36979265 synonymous SNV . 0 22 hm5C_associated_SNPs_76963 0 0 0 0 2 LBP chr20:36979342 5'GT 36979342 Upstream 78bp
chr1 236902789 236902789 1 + G T LUSC 236902787 + 236902767 236902807 41 CTGCAGACCAAGCTGCGGATCAGCAACCGTCCTGCCTTCAT CTGCAGACCAAGCTGCGGATCATCAACCGTCCTGCCTTCAT < 41bp 0.727057970134397 0.371197405568983 0.2662925 0.1211777 prediction 0.454115940268794 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236902787 chr1:236902789 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_76964 0 0 0 0 1 ACTN2 chr1:236902832 5'GT 236902832 Upstream 44bp
chr11 68675722 68675722 1 + C T rs144401213 68675720 + 68675700 68675740 41 CGGTGGCCTTTGATGAGTCCCACGATTTCCAGTTGAGCTTG CGGTGGCCTTTGATGAGTCCCATGATTTCCAGTTGAGCTTG < 41bp 0.849264462761949 0.622214752474586 0.0398255 0.18647659 prediction 0.454099420574725 Functional Loss - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68675720 chr11:68675722 synonymous SNV . 0 23 hm5C_associated_SNPs_76968 2 0 1 0 1 IGHMBP2 chr11:68675805 5'GT 68675805 Upstream 84bp
chr1 155036349 155036349 1 + G T SARC 155036347 + 155036327 155036367 41 GTCCTCTGGGCCGCGTTCCTCGGCTCCCCTCTGCGCGGGGG GTCCTCTGGGCCGCGTTCCTCGTCTCCCCTCTGCGCGGGGG < 41bp 0.727049664409129 0.376432406496985 0.81014585 0.22529843 prediction 0.454099328818258 Functional Loss - EFNA4 ENSG00000143590;ENSG00000243364;ENSG00000251246 CDS Human other chr1:155036347 chr1:155036349 nonsynonymous SNV 0.909 3 23 hm5C_associated_SNPs_76969 0 0 1 0 1 EFNA4 chr1:155036412 5'GT 155036412 Upstream 64bp
chr7 148851390 148851390 1 + G T LUSC 148851387 + 148851367 148851407 41 CTGCTGCGCAACAGGAACTTCTGGATCCTGCGGCTCCCTCC CTGCTGCGCAACAGGAACTTCTGTATCCTGCGGCTCCCTCC < 41bp 0.861654824468172 0.63460520455695 0.77989864 0.3303065 prediction 0.454099239822445 Functional Loss - ZNF398 ENSG00000197024 CDS Human protein_coding chr7:148851387 chr7:148851390 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_76970 0 0 0 0 1 ZNF398 chr7:148851432 5'GT 148851432 Upstream 43bp
chr8 11615857 11615857 1 + C T GBM 11615855 + 11615835 11615875 41 CCCTCCATCCACCCTGTCCTCTCGGCCCTGAAGCTCTCCCC CCCTCCATCCACCCTGTCCTCTTGGCCCTGAAGCTCTCCCC < 41bp 0.823727525284187 0.596681460888291 0.15826595 0.051532567 prediction 0.454092128791791 Functional Loss - GATA4 ENSG00000136574 CDS Human protein_coding chr8:11615855 chr8:11615857 nonsynonymous SNV 0.605 2 23 hm5C_associated_SNPs_76974 0 0 1 0 1 GATA4 chr8:11615802 3'AG 11615802 Downstream 56bp
chr1 65142603 65142603 1 + G A rs186636583 65142600 + 65142580 65142620 41 ACCCCAGCTGCGAGGTCCACCAGGAGCCGGTGACATACACA ACCCCAGCTGCGAGGTCCACCAGAAGCCGGTGACATACACA < 41bp 0.752127460008262 0.525089861195707 0.8052634 0.26104623 prediction 0.45407519762511 Functional Loss - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65142600 chr1:65142603 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_76977 0 0 0 0 2 CACHD1 chr1:65142578 3'AG 65142578 Downstream 26bp
chr1 65142603 65142603 1 + G A rs186636583 65142600 + 65142580 65142620 41 ACCCCAGCTGCGAGGTCCACCAGGAGCCGGTGACATACACA ACCCCAGCTGCGAGGTCCACCAGAAGCCGGTGACATACACA < 41bp 0.752127460008262 0.525089861195707 0.8052634 0.26104623 prediction 0.45407519762511 Functional Loss - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65142600 chr1:65142603 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_76977 0 0 0 0 2 CACHD1 chr1:65142694 5'GT 65142694 Upstream 92bp
chr2 99812108 99812108 1 + T C rs7572157 99812107 + 99812087 99812127 41 TAACACGTGCCTCAAAAGCACTGGGGAGTTAGTAGTGCAGT TAACACGTGCCTCAAAAGCACCGGGGAGTTAGTAGTGCAGT < 41bp 0.731916954909658 0.504882337094828 0.2657321 0.2526471 prediction 0.454069235629661 Functional Loss - MRPL30 ENSG00000185414;ENSG00000241962 CDS Human other chr2:99812107 chr2:99812108 synonymous SNV . 0 22 hm5C_associated_SNPs_76982 0 0 1 0 1 MRPL30 chr2:99812036 3'AG 99812036 Downstream 73bp
chr1 236902625 236902625 1 + G A COAD 236902622 + 236902602 236902642 41 CTTTTGGAATGGATTCGTCGCACGATCCCCTGGCTGGAGAA CTTTTGGAATGGATTCGTCGCACAATCCCCTGGCTGGAGAA < 41bp 0.76513198648069 0.538098191795978 0.33523524 0.19167662 prediction 0.454067589369425 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236902622 chr1:236902625 synonymous SNV . 0 24 hm5C_associated_SNPs_76983 0 0 1 0 1 ACTN2 chr1:236902602 3'AG 236902602 Downstream 24bp
chr3 119236143 119236143 1 + G T LUSC 119236140 + 119236120 119236160 41 AGAAGGATCGAAAGGCACTCCATGAGCTAAAACTGGAAGAG AGAAGGATCGAAAGGCACTCCATTAGCTAAAACTGGAAGAG < 41bp 0.727033425275738 0.337522287841983 0.07732996 0.055284888 prediction 0.454066850551476 Functional Loss - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119236140 chr3:119236143 stopgain 0.608 0 24 hm5C_associated_SNPs_76985 0 0 1 1 2 TIMMDC1 chr3:119236052 3'AG 119236052 Downstream 92bp
chr3 119236143 119236143 1 + G T LUSC 119236140 + 119236120 119236160 41 AGAAGGATCGAAAGGCACTCCATGAGCTAAAACTGGAAGAG AGAAGGATCGAAAGGCACTCCATTAGCTAAAACTGGAAGAG < 41bp 0.727033425275738 0.337522287841983 0.07732996 0.055284888 prediction 0.454066850551476 Functional Loss - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119236140 chr3:119236143 stopgain 0.608 0 24 hm5C_associated_SNPs_76985 0 0 1 1 2 TIMMDC1 chr3:119236162 5'GT 119236162 Upstream 20bp
chr12 101017384 101017384 1 + G A LUAD 101017381 + 101017361 101017401 41 ATGGTTCGCGTTGGTGGAGGCTGGGATACTCTTCAAGGATT ATGGTTCGCGTTGGTGGAGGCTGAGATACTCTTCAAGGATT < 41bp 0.737535615110991 0.510502596918166 0.5726725 0.29462084 prediction 0.454066036385649 Functional Loss - GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:101017381 chr12:101017384 stopgain 1.000 1 24 hm5C_associated_SNPs_76986 0 0 1 0 1 GAS2L3 chr12:101017340 3'AG 101017340 Downstream 45bp
chr1 33764619 33764619 1 + G T CESC 33764617 + 33764597 33764637 41 CCCCAGAGGACGGAGTCCCCCGGCATCCCGGTGCGAATCTC CCCCAGAGGACGGAGTCCCCCGTCATCCCGGTGCGAATCTC < 41bp 0.892365667508194 0.665332898389525 0.66740257 0.106978 prediction 0.454065538237339 Functional Loss - ZNF362 ENSG00000160094 CDS Human protein_coding chr1:33764617 chr1:33764619 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_76987 0 0 1 0 1 ZNF362 chr1:33764531 3'AG 33764531 Downstream 89bp
chr8 86358459 86358459 1 + C T COAD 86358457 + 86358437 86358477 41 ACCTACCAGGGCTCATTCACCACGCCGCCCTGCGAGGAATG ACCTACCAGGGCTCATTCACCATGCCGCCCTGCGAGGAATG < 41bp 0.727029214320761 0.450390514312199 0.4063039 0.3643018 prediction 0.454058428641523 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86358457 chr8:86358459 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_76989 0 0 0 0 2 CA3 chr8:86358371 3'AG 86358371 Downstream 89bp
chr8 86358459 86358459 1 + C T COAD 86358457 + 86358437 86358477 41 ACCTACCAGGGCTCATTCACCACGCCGCCCTGCGAGGAATG ACCTACCAGGGCTCATTCACCATGCCGCCCTGCGAGGAATG < 41bp 0.727029214320761 0.450390514312199 0.4063039 0.3643018 prediction 0.454058428641523 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86358457 chr8:86358459 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_76989 0 0 0 0 2 CA3 chr8:86358526 5'GT 86358526 Upstream 68bp
chr8 86358460 86358460 1 + G A UCEC 86358457 + 86358437 86358477 41 ACCTACCAGGGCTCATTCACCACGCCGCCCTGCGAGGAATG ACCTACCAGGGCTCATTCACCACACCGCCCTGCGAGGAATG < 41bp 0.727029214320761 0.487047997370088 0.4063039 0.08547869 prediction 0.454058428641523 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86358457 chr8:86358460 synonymous SNV . 0 24 hm5C_associated_SNPs_76990 0 0 0 0 2 CA3 chr8:86358371 3'AG 86358371 Downstream 90bp
chr8 86358460 86358460 1 + G A UCEC 86358457 + 86358437 86358477 41 ACCTACCAGGGCTCATTCACCACGCCGCCCTGCGAGGAATG ACCTACCAGGGCTCATTCACCACACCGCCCTGCGAGGAATG < 41bp 0.727029214320761 0.487047997370088 0.4063039 0.08547869 prediction 0.454058428641523 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86358457 chr8:86358460 synonymous SNV . 0 24 hm5C_associated_SNPs_76990 0 0 0 0 2 CA3 chr8:86358526 5'GT 86358526 Upstream 67bp
chr15 41145782 41145782 1 + G A COAD 41145779 + 41145759 41145799 41 AGCTCAGACCACCCAGAGGACACGGCCAACGTCACAGTCAC AGCTCAGACCACCCAGAGGACACAGCCAACGTCACAGTCAC < 41bp 0.727025928645852 0.495429110894887 0.14140275 0.053094864 prediction 0.454051857291704 Functional Loss - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41145779 chr15:41145782 synonymous SNV . 0 24 hm5C_associated_SNPs_76993 0 0 0 0 2 SPINT1 chr15:41145687 3'AG 41145687 Downstream 96bp
chr15 41145782 41145782 1 + G A COAD 41145779 + 41145759 41145799 41 AGCTCAGACCACCCAGAGGACACGGCCAACGTCACAGTCAC AGCTCAGACCACCCAGAGGACACAGCCAACGTCACAGTCAC < 41bp 0.727025928645852 0.495429110894887 0.14140275 0.053094864 prediction 0.454051857291704 Functional Loss - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41145779 chr15:41145782 synonymous SNV . 0 24 hm5C_associated_SNPs_76993 0 0 0 0 2 SPINT1 chr15:41145825 5'GT 41145825 Upstream 44bp
chr3 133485204 133485204 1 + G C LUSC 133485203 + 133485183 133485223 41 AGGCAAGAAGTCCTGCCATACGGCAGTTGGCAGAACCGCTG AGGCAAGAAGTCCTGCCATACCGCAGTTGGCAGAACCGCTG < 41bp 0.885840345351717 0.658815404656134 0.28240138 0.37680387 prediction 0.454049881391166 Functional Loss - TF ENSG00000091513 CDS Human protein_coding chr3:133485203 chr3:133485204 synonymous SNV . 0 22 hm5C_associated_SNPs_76994 0 0 1 0 1 TF chr3:133485277 5'GT 133485277 Upstream 74bp
chr7 73803583 73803583 1 + A C UCEC 73803579 + 73803559 73803599 41 TCATCAGCCAGGAGCTGCTGCGGAAGGAGCGGTGAGGCGGC TCATCAGCCAGGAGCTGCTGCGGACGGAGCGGTGAGGCGGC < 41bp 0.727023342843644 0.322268504911489 0.8629184 0.7490763 prediction 0.454046685687287 Functional Loss - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73803579 chr7:73803583 nonsynonymous SNV 0.947 2 25 hm5C_associated_SNPs_76995 0 0 0 0 1 CLIP2 chr7:73803589 5'GT 73803589 Upstream 7bp
chr4 25671398 25671398 1 + G A SKCM 25671395 + 25671375 25671415 41 ATAGTGGAGAGCTTCCACTTCAAGAATGGAGAAGATGCCCC ATAGTGGAGAGCTTCCACTTCAAAAATGGAGAAGATGCCCC < 41bp 0.781774843644431 0.554754977064628 0.16941059 0.10738668 prediction 0.454039733159607 Functional Loss - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25671395 chr4:25671398 synonymous SNV . 0 24 hm5C_associated_SNPs_76996 0 0 0 0 1 SLC34A2 chr4:25671464 5'GT 25671464 Upstream 67bp
chr3 47451443 47451443 1 + C T SKCM 47451441 + 47451421 47451461 41 GCTGAAGAAGAAGCCGCCGCCACGGCCCACAGCCCCAAAGC GCTGAAGAAGAAGCCGCCGCCATGGCCCACAGCCCCAAAGC < 41bp 0.796710168927436 0.569691423378072 0.6090237 0.41507596 prediction 0.454037491098728 Functional Loss - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47451441 chr3:47451443 nonsynonymous SNV 0.991 3 23 hm5C_associated_SNPs_76998 0 0 0 0 1 PTPN23 chr3:47451418 3'AG 47451418 Downstream 26bp
chr10 95278683 95278683 1 + G A rs75139274 95278680 + 95278660 95278700 41 AAAGCAGCAAGAAGAACAAACAAGGGTAGCTCTGTTGGAAC AAAGCAGCAAGAAGAACAAACAAAGGTAGCTCTGTTGGAAC < 41bp 0.727017381938562 0.485768612836095 0.9405873 0.9200947 prediction 0.454034763877124 Functional Loss - CEP55 ENSG00000138180 CDS Human protein_coding chr10:95278680 chr10:95278683 nonsynonymous SNV 0.829 1 24 hm5C_associated_SNPs_76999 0 0 1 0 2 CEP55 chr10:95278634 3'AG 95278634 Downstream 50bp
chr10 95278683 95278683 1 + G A rs75139274 95278680 + 95278660 95278700 41 AAAGCAGCAAGAAGAACAAACAAGGGTAGCTCTGTTGGAAC AAAGCAGCAAGAAGAACAAACAAAGGTAGCTCTGTTGGAAC < 41bp 0.727017381938562 0.485768612836095 0.9405873 0.9200947 prediction 0.454034763877124 Functional Loss - CEP55 ENSG00000138180 CDS Human protein_coding chr10:95278680 chr10:95278683 nonsynonymous SNV 0.829 1 24 hm5C_associated_SNPs_76999 0 0 1 0 2 CEP55 chr10:95278705 5'GT 95278705 Upstream 23bp
chr16 4383476 4383476 1 + G A CESC 4383473 + 4383453 4383493 41 ATGGCAGCAGCTCGCTGTCCCCCGAGCGCCAGGGCAACGGG ATGGCAGCAGCTCGCTGTCCCCCAAGCGCCAGGGCAACGGG < 41bp 0.791706308410114 0.564689755708846 0.051438928 0.034085542 prediction 0.454033105402538 Functional Loss - GLIS2 ENSG00000126603 CDS Human protein_coding chr16:4383473 chr16:4383476 nonsynonymous SNV 0.965 4 24 hm5C_associated_SNPs_77000 0 0 1 0 1 GLIS2 chr16:4383520 5'GT 4383520 Upstream 45bp
chr9 136307846 136307846 1 + T C UCEC 136307845 + 136307825 136307865 41 CGTGGCCAGAGGCCTGCGTGCTCGAACCCTGCCCTCCCTAG CGTGGCCAGAGGCCTGCGTGCCCGAACCCTGCCCTCCCTAG < 41bp 0.763674286257353 0.536665776369376 0.18051824 0.113863766 prediction 0.454017019775955 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136307845 chr9:136307846 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_77004 0 0 1 0 1 ADAMTS13 chr9:136307864 5'GT 136307864 Upstream 19bp
chr16 19485576 19485576 1 + G A SKCM 19485573 + 19485553 19485593 41 AGAGGTACGAGATGCCACGGCACGAAGTCTACGTTCTCCTG AGAGGTACGAGATGCCACGGCACAAAGTCTACGTTCTCCTG < 41bp 0.776989430303807 0.549984879207962 0.101027936 0.101845026 prediction 0.454009102191689 Functional Loss - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19485573 chr16:19485576 nonsynonymous SNV 0.259 1 24 hm5C_associated_SNPs_77005 0 0 0 0 1 TMC5 chr16:19485598 5'GT 19485598 Upstream 23bp
chr7 129094344 129094344 1 + C T LUSC 129094342 + 129094322 129094362 41 CCCCTGTGGGTGGAGAACAGCCCGGGAGACCTTCCGCACTG CCCCTGTGGGTGGAGAACAGCCTGGGAGACCTTCCGCACTG < 41bp 0.833680448370625 0.606679841385724 0.85065675 0.53670764 prediction 0.454001213969803 Functional Loss - STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129094342 chr7:129094344 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_77010 0 0 1 0 1 STRIP2 chr7:129094368 5'GT 129094368 Upstream 25bp
chr2 74687380 74687380 1 + G C HNSC 74687379 + 74687359 74687399 41 ACCTTCAAGCCCCCAGCCTACGAGGATGTGGTTCACCGCCC ACCTTCAAGCCCCCAGCCTACCAGGATGTGGTTCACCGCCC < 41bp 0.883374844681108 0.656376032897101 0.84691155 0.32510966 prediction 0.453997623568016 Functional Loss - WBP1 ENSG00000239779 CDS Human protein_coding chr2:74687379 chr2:74687380 nonsynonymous SNV 0.983 3 22 hm5C_associated_SNPs_77011 0 0 1 0 1 WBP1 chr2:74687348 3'AG 74687348 Downstream 33bp
chr7 134927575 134927575 1 + G T STAD 134927572 + 134927552 134927592 41 CAAAGAGTCATATTCCAGAACTGGAGCAAACCCTGGATAAT CAAAGAGTCATATTCCAGAACTGTAGCAAACCCTGGATAAT < 41bp 0.726998772634079 0.328444970009795 0.300334 0.14589056 prediction 0.453997545268158 Functional Loss - STRA8 ENSG00000146857 CDS Human protein_coding chr7:134927572 chr7:134927575 stopgain 0.935 0 24 hm5C_associated_SNPs_77012 0 0 0 0 2 STRA8 chr7:134927533 3'AG 134927533 Downstream 43bp
chr7 134927575 134927575 1 + G T STAD 134927572 + 134927552 134927592 41 CAAAGAGTCATATTCCAGAACTGGAGCAAACCCTGGATAAT CAAAGAGTCATATTCCAGAACTGTAGCAAACCCTGGATAAT < 41bp 0.726998772634079 0.328444970009795 0.300334 0.14589056 prediction 0.453997545268158 Functional Loss - STRA8 ENSG00000146857 CDS Human protein_coding chr7:134927572 chr7:134927575 stopgain 0.935 0 24 hm5C_associated_SNPs_77012 0 0 0 0 2 STRA8 chr7:134927608 5'GT 134927608 Upstream 34bp
chr12 21331528 21331528 1 + G T LUSC 21331525 + 21331505 21331545 41 CATAGGTTGTTTAAAGGAATCTGGGTCATACATGTGGATAT CATAGGTTGTTTAAAGGAATCTGTGTCATACATGTGGATAT < 41bp 0.726996665451498 0.356809372348836 0.27621523 0.04571849 prediction 0.453993330902997 Functional Loss - SLCO1B1 ENSG00000134538 CDS Human protein_coding chr12:21331525 chr12:21331528 nonsynonymous SNV 0.161 0 24 hm5C_associated_SNPs_77013 0 0 0 0 1 SLCO1B1 chr12:21331510 3'AG 21331510 Downstream 19bp
chrX 149814302 149814302 1 + C T CESC 149814299 + 149814279 149814319 41 AATAAACAAATTTCTAAACTCACCATTTATGATGCAAGACC AATAAACAAATTTCTAAACTCACTATTTATGATGCAAGACC < 41bp 0.726993755825216 0.497321301497549 0.19498497 0.30675498 prediction 0.453987511650432 Functional Loss - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149814299 chrX:149814302 synonymous SNV . 0 24 hm5C_associated_SNPs_77015 0 0 1 1 1 MTM1 chrX:149814344 5'GT 149814344 Upstream 43bp
chr6 7727766 7727766 1 + G A UCEC 7727763 + 7727743 7727783 41 GAGCCTTCTGGCCCCCGGATCTGGCAGCGGCGGCGCGTCCC GAGCCTTCTGGCCCCCGGATCTGACAGCGGCGGCGCGTCCC < 41bp 0.802409812498795 0.575416658981383 0.42895716 0.22228119 prediction 0.453986307034824 Functional Loss - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7727763 chr6:7727766 nonsynonymous SNV 0.008 1 24 hm5C_associated_SNPs_77016 0 0 1 0 1 BMP6 chr6:7727852 5'GT 7727852 Upstream 87bp
chr5 139197119 139197119 1 + C T STAD 139197117 + 139197097 139197137 41 TACCTCAGTTTCTTCGACTTCTCGGGCTTGACTCTGGACGG TACCTCAGTTTCTTCGACTTCTTGGGCTTGACTCTGGACGG < 41bp 0.848270599405945 0.621277510998546 0.0957672 0.10672563 prediction 0.453986176814798 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139197117 chr5:139197119 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_77017 0 0 0 0 2 PSD2 chr5:139197066 3'AG 139197066 Downstream 54bp
chr5 139197119 139197119 1 + C T STAD 139197117 + 139197097 139197137 41 TACCTCAGTTTCTTCGACTTCTCGGGCTTGACTCTGGACGG TACCTCAGTTTCTTCGACTTCTTGGGCTTGACTCTGGACGG < 41bp 0.848270599405945 0.621277510998546 0.0957672 0.10672563 prediction 0.453986176814798 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139197117 chr5:139197119 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_77017 0 0 0 0 2 PSD2 chr5:139197146 5'GT 139197146 Upstream 28bp
chr3 191097987 191097987 1 + C T COAD 191097984 + 191097964 191098004 41 GATGAAAGAAGCTGTATCTACTCCATCACGAATGGCCCACA GATGAAAGAAGCTGTATCTACTCTATCACGAATGGCCCACA < 41bp 0.726990663792078 0.493735633478234 0.90634656 0.59810424 prediction 0.453981327584156 Functional Loss - CCDC50 ENSG00000152492 CDS Human protein_coding chr3:191097984 chr3:191097987 nonsynonymous SNV 0.013 0 24 hm5C_associated_SNPs_77018 0 0 1 0 2 CCDC50 chr3:191097948 3'AG 191097948 Downstream 40bp
chr3 191097987 191097987 1 + C T COAD 191097984 + 191097964 191098004 41 GATGAAAGAAGCTGTATCTACTCCATCACGAATGGCCCACA GATGAAAGAAGCTGTATCTACTCTATCACGAATGGCCCACA < 41bp 0.726990663792078 0.493735633478234 0.90634656 0.59810424 prediction 0.453981327584156 Functional Loss - CCDC50 ENSG00000152492 CDS Human protein_coding chr3:191097984 chr3:191097987 nonsynonymous SNV 0.013 0 24 hm5C_associated_SNPs_77018 0 0 1 0 2 CCDC50 chr3:191098063 5'GT 191098063 Upstream 77bp
chr5 6750570 6750570 1 + C T BLCA 6750567 + 6750547 6750587 41 GTCCAGCCCCCAGCTCCTGTCTTCAGGCTCCTCGGCCTCTT GTCCAGCCCCCAGCTCCTGTCTTTAGGCTCCTCGGCCTCTT < 41bp 0.741439664786684 0.514452788285866 0.2586339 0.15748087 prediction 0.453973753001637 Functional Loss - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6750567 chr5:6750570 nonsynonymous SNV 0.209 1 24 hm5C_associated_SNPs_77020 0 0 1 0 1 PAPD7 chr5:6750616 5'GT 6750616 Upstream 47bp
chr11 64128048 64128048 1 + T C UCEC 64128047 + 64128027 64128067 41 GGGGTGAGATCGTGCTGGCCCTGGAACACCTGCACAAGGTG GGGGTGAGATCGTGCTGGCCCCGGAACACCTGCACAAGGTG < 41bp 0.780353382501205 0.553368638169525 0.5112646 0.72756004 prediction 0.453969488663359 Functional Loss - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64128047 chr11:64128048 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_77022 0 0 1 0 2 RPS6KA4 chr11:64127949 3'AG 64127949 Downstream 100bp
chr11 64128048 64128048 1 + T C UCEC 64128047 + 64128027 64128067 41 GGGGTGAGATCGTGCTGGCCCTGGAACACCTGCACAAGGTG GGGGTGAGATCGTGCTGGCCCCGGAACACCTGCACAAGGTG < 41bp 0.780353382501205 0.553368638169525 0.5112646 0.72756004 prediction 0.453969488663359 Functional Loss - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64128047 chr11:64128048 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_77022 0 0 1 0 2 RPS6KA4 chr11:64128064 5'GT 64128064 Upstream 17bp
chr19 38817576 38817576 1 + C T LUSC 38817574 + 38817554 38817594 41 TCGGCCTGGGCGACTACGTGCCCGGGGAGGCCCCTGGCCAG TCGGCCTGGGCGACTACGTGCCTGGGGAGGCCCCTGGCCAG < 41bp 0.80838308492563 0.581399082324531 0.2683664 0.37554485 prediction 0.453968005202197 Functional Loss - KCNK6 ENSG00000099337 CDS Human protein_coding chr19:38817574 chr19:38817576 synonymous SNV . 0 23 hm5C_associated_SNPs_77023 0 0 0 0 1 KCNK6 chr19:38817628 5'GT 38817628 Upstream 53bp
chr1 2519892 2519892 1 + G A UCEC 2519889 + 2519869 2519909 41 CCCGTGCGTGATGTGGCTGCCAAGGTGTGTGCGGGTCAAGG CCCGTGCGTGATGTGGCTGCCAAAGTGTGTGCGGGTCAAGG < 41bp 0.748089021200738 0.521114073545679 0.521025 0.35387024 prediction 0.453949895310116 Functional Loss - FAM213B ENSG00000157870 CDS Human protein_coding chr1:2519889 chr1:2519892 synonymous SNV . 0 24 hm5C_associated_SNPs_77025 0 0 1 0 2 FAM213B chr1:2519829 3'AG 2519829 Downstream 64bp
chr1 2519892 2519892 1 + G A UCEC 2519889 + 2519869 2519909 41 CCCGTGCGTGATGTGGCTGCCAAGGTGTGTGCGGGTCAAGG CCCGTGCGTGATGTGGCTGCCAAAGTGTGTGCGGGTCAAGG < 41bp 0.748089021200738 0.521114073545679 0.521025 0.35387024 prediction 0.453949895310116 Functional Loss - FAM213B ENSG00000157870 CDS Human protein_coding chr1:2519889 chr1:2519892 synonymous SNV . 0 24 hm5C_associated_SNPs_77025 0 0 1 0 2 FAM213B chr1:2519892 5'GT 2519892 Upstream 1bp
chrX 107304740 107304740 1 + G A UCEC 107304737 + 107304717 107304757 41 AATGACGCACGCAAGAGACGCTCGGGGAAGATGTAGCTGGA AATGACGCACGCAAGAGACGCTCAGGGAAGATGTAGCTGGA < 41bp 0.733053869125521 0.506081195715276 0.15858075 0.027464926 prediction 0.453945346820491 Functional Loss - VSIG1 ENSG00000101842 CDS Human protein_coding chrX:107304737 chrX:107304740 nonsynonymous SNV 0.978 2 24 hm5C_associated_SNPs_77026 0 0 0 0 2 VSIG1 chrX:107304658 3'AG 107304658 Downstream 83bp
chrX 107304740 107304740 1 + G A UCEC 107304737 + 107304717 107304757 41 AATGACGCACGCAAGAGACGCTCGGGGAAGATGTAGCTGGA AATGACGCACGCAAGAGACGCTCAGGGAAGATGTAGCTGGA < 41bp 0.733053869125521 0.506081195715276 0.15858075 0.027464926 prediction 0.453945346820491 Functional Loss - VSIG1 ENSG00000101842 CDS Human protein_coding chrX:107304737 chrX:107304740 nonsynonymous SNV 0.978 2 24 hm5C_associated_SNPs_77026 0 0 0 0 2 VSIG1 chrX:107304765 5'GT 107304765 Upstream 26bp
chr22 44372652 44372652 1 + G A UCEC 44372649 + 44372629 44372669 41 GCACGCCATGGTCATCGATTCTCGGAATTCTTCCATCTTAC GCACGCCATGGTCATCGATTCTCAGAATTCTTCCATCTTAC < 41bp 0.726965496728264 0.482406411706974 0.59271187 0.15408158 prediction 0.453930993456528 Functional Loss - SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44372649 chr22:44372652 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_77027 0 0 1 0 2 SAMM50 chr22:44372630 3'AG 44372630 Downstream 23bp
chr22 44372652 44372652 1 + G A UCEC 44372649 + 44372629 44372669 41 GCACGCCATGGTCATCGATTCTCGGAATTCTTCCATCTTAC GCACGCCATGGTCATCGATTCTCAGAATTCTTCCATCTTAC < 41bp 0.726965496728264 0.482406411706974 0.59271187 0.15408158 prediction 0.453930993456528 Functional Loss - SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44372649 chr22:44372652 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_77027 0 0 1 0 2 SAMM50 chr22:44372701 5'GT 44372701 Upstream 50bp
chr1 74954891 74954891 1 + G T LUSC 74954889 + 74954869 74954909 41 ACAGGGAAGACCCGAATTTTCTGAAGTTGTCATGAAGTTAG ACAGGGAAGACCCGAATTTTCTTAAGTTGTCATGAAGTTAG < 41bp 0.726963157949031 0.407931644383346 0.1968832 0.09871343 prediction 0.453926315898061 Functional Loss - FPGT-TNNI3K;TNNI3K ENSG00000116783;ENSG00000259030 CDS Human other chr1:74954889 chr1:74954891 stopgain 0.998 1 23 hm5C_associated_SNPs_77029 0 0 0 0 2 FPGT-TNNI3K;TNNI3K chr1:74954873 3'AG 74954873 Downstream 19bp
chr1 74954891 74954891 1 + G T LUSC 74954889 + 74954869 74954909 41 ACAGGGAAGACCCGAATTTTCTGAAGTTGTCATGAAGTTAG ACAGGGAAGACCCGAATTTTCTTAAGTTGTCATGAAGTTAG < 41bp 0.726963157949031 0.407931644383346 0.1968832 0.09871343 prediction 0.453926315898061 Functional Loss - FPGT-TNNI3K;TNNI3K ENSG00000116783;ENSG00000259030 CDS Human other chr1:74954889 chr1:74954891 stopgain 0.998 1 23 hm5C_associated_SNPs_77029 0 0 0 0 2 FPGT-TNNI3K;TNNI3K chr1:74954932 5'GT 74954932 Upstream 42bp
chr6 16254927 16254927 1 + G A BLCA 16254924 + 16254904 16254944 41 TCAGAACATTTTGTGGAATTCGTGAAACTTGTCCGTGCCAA TCAGAACATTTTGTGGAATTCGTAAAACTTGTCCGTGCCAA < 41bp 0.729048084189791 0.502085444667896 0.20274016 0.11419928 prediction 0.45392527904379 Functional Loss - GMPR ENSG00000137198 CDS Human protein_coding chr6:16254924 chr6:16254927 synonymous SNV . 0 24 hm5C_associated_SNPs_77031 0 0 1 0 1 GMPR chr6:16254966 5'GT 16254966 Upstream 40bp
chr2 219299355 219299355 1 + G A rs143261714 219299352 + 219299332 219299372 41 CAAGGCCTTTGAGGTCCCAGCGCGGGCCAATTTCCTCAATT CAAGGCCTTTGAGGTCCCAGCGCAGGCCAATTTCCTCAATT < 41bp 0.726962467594235 0.472358125647159 0.34743154 0.10455987 prediction 0.45392493518847 Functional Loss - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219299352 chr2:219299355 nonsynonymous SNV 0.279 0 24 hm5C_associated_SNPs_77032 0 0 0 0 1 VIL1 chr2:219299428 5'GT 219299428 Upstream 74bp
chr20 36952363 36952363 1 + T C OV 36952362 + 36952342 36952382 41 CCCATGACCGCATGGTATACCTGGGCCTCTCAGACTACTTC CCCATGACCGCATGGTATACCCGGGCCTCTCAGACTACTTC < 41bp 0.779264261614777 0.552306140463128 0.0046401024 0.1570479 prediction 0.453916242303298 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36952362 chr20:36952363 nonsynonymous SNV 0.842 3 22 hm5C_associated_SNPs_77035 0 0 0 0 2 BPI chr20:36952272 3'AG 36952272 Downstream 92bp
chr20 36952363 36952363 1 + T C OV 36952362 + 36952342 36952382 41 CCCATGACCGCATGGTATACCTGGGCCTCTCAGACTACTTC CCCATGACCGCATGGTATACCCGGGCCTCTCAGACTACTTC < 41bp 0.779264261614777 0.552306140463128 0.0046401024 0.1570479 prediction 0.453916242303298 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36952362 chr20:36952363 nonsynonymous SNV 0.842 3 22 hm5C_associated_SNPs_77035 0 0 0 0 2 BPI chr20:36952448 5'GT 36952448 Upstream 86bp
chr22 40802522 40802522 1 + G A UCEC 40802519 + 40802499 40802539 41 ATCCCGTCGCAGATGGAGGACGCGGAGCTGCTTCTGGGGGT ATCCCGTCGCAGATGGAGGACGCAGAGCTGCTTCTGGGGGT < 41bp 0.790101347640005 0.563151402630506 0.4277982 0.23958632 prediction 0.453899890018997 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40802519 chr22:40802522 synonymous SNV . 0 24 hm5C_associated_SNPs_77042 0 0 1 0 1 SGSM3 chr22:40802442 3'AG 40802442 Downstream 81bp
chr2 113325622 113325622 1 + G T LUSC 113325620 + 113325600 113325640 41 AGGAAAACCAAGTCTGTACCCAGGATTGTTCCTTTTTACCA AGGAAAACCAAGTCTGTACCCATGATTGTTCCTTTTTACCA < 41bp 0.893502077783662 0.666553295571708 0.9150293 0.34792218 prediction 0.453897564423908 Functional Loss - POLR1B ENSG00000125630 CDS Human protein_coding chr2:113325620 chr2:113325622 stopgain 1.000 1 23 hm5C_associated_SNPs_77043 0 0 1 0 2 POLR1B chr2:113325544 3'AG 113325544 Downstream 79bp
chr2 113325622 113325622 1 + G T LUSC 113325620 + 113325600 113325640 41 AGGAAAACCAAGTCTGTACCCAGGATTGTTCCTTTTTACCA AGGAAAACCAAGTCTGTACCCATGATTGTTCCTTTTTACCA < 41bp 0.893502077783662 0.666553295571708 0.9150293 0.34792218 prediction 0.453897564423908 Functional Loss - POLR1B ENSG00000125630 CDS Human protein_coding chr2:113325620 chr2:113325622 stopgain 1.000 1 23 hm5C_associated_SNPs_77043 0 0 1 0 2 POLR1B chr2:113325714 5'GT 113325714 Upstream 93bp
chr11 33612861 33612861 1 + G A HNSC 33612858 + 33612838 33612878 41 AGGAGGTCATCCCTGTGACTCAGGAGACAGTGGTTCTCCCA AGGAGGTCATCCCTGTGACTCAGAAGACAGTGGTTCTCCCA < 41bp 0.763792559509139 0.536858084287202 0.93023634 0.7654549 prediction 0.453868950443874 Functional Loss - KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33612858 chr11:33612861 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_77047 0 0 0 0 1 KIAA1549L chr11:33612783 3'AG 33612783 Downstream 79bp
chr19 47844136 47844136 1 + C T SKCM 47844134 + 47844114 47844154 41 CCTGTGGACTGCCTGGATGGCGCCTGCCTGGCCATCGACCC CCTGTGGACTGCCTGGATGGCGTCTGCCTGGCCATCGACCC < 41bp 0.756103429318152 0.529172575112681 0.50687015 0.6674775 prediction 0.453861708410941 Functional Loss - C5AR2 ENSG00000134830 CDS Human protein_coding chr19:47844134 chr19:47844136 nonsynonymous SNV 0.039 0 23 hm5C_associated_SNPs_77050 0 0 0 0 1 C5AR2 chr19:47844042 3'AG 47844042 Downstream 95bp
chr1 220953575 220953575 1 + T C STAD 220953574 + 220953554 220953594 41 GGAAACAGCCACTGGACACCCTGAAGAGGTAGAATACCACC GGAAACAGCCACTGGACACCCCGAAGAGGTAGAATACCACC < 41bp 0.77405692616603 0.547126537824756 0.054165483 0.05558163 prediction 0.453860776682547 Functional Loss - MARC2 ENSG00000117791 CDS Human protein_coding chr1:220953574 chr1:220953575 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_77051 0 0 0 0 2 MARC2 chr1:220953510 3'AG 220953510 Downstream 66bp
chr1 220953575 220953575 1 + T C STAD 220953574 + 220953554 220953594 41 GGAAACAGCCACTGGACACCCTGAAGAGGTAGAATACCACC GGAAACAGCCACTGGACACCCCGAAGAGGTAGAATACCACC < 41bp 0.77405692616603 0.547126537824756 0.054165483 0.05558163 prediction 0.453860776682547 Functional Loss - MARC2 ENSG00000117791 CDS Human protein_coding chr1:220953574 chr1:220953575 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_77051 0 0 0 0 2 MARC2 chr1:220953581 5'GT 220953581 Upstream 7bp
chr20 62783241 62783241 1 + C T rs4809257 62783239 + 62783219 62783259 41 AACCGGTGGCAGAATGTTCCCGCGTTTCTGGTCCTCATCAG AACCGGTGGCAGAATGTTCCCGTGTTTCTGGTCCTCATCAG < 41bp 0.746032843319784 0.519107126522332 0.38317007 0.27639467 prediction 0.453851433594904 Functional Loss - NPBWR2;MYT1 ENSG00000196132 UTR5 Human protein_coding chr20:62783239 chr20:62783241 . . 0 23 hm5C_associated_SNPs_77053 0 0 1 0 1 NPBWR2;MYT1 chr20:62783263 5'GT 62783263 Upstream 23bp
chr3 127702959 127702959 1 + C T SKCM 127702956 + 127702936 127702976 41 TCAGATCGCCATGAGGTTATCTCCAAAGAAATATTGGAACT TCAGATCGCCATGAGGTTATCTCTAAAGAAATATTGGAACT < 41bp 0.727327550768741 0.500403919364733 0.9674829 0.93489295 prediction 0.453847262808015 Functional Loss - KBTBD12 ENSG00000187715 CDS Human protein_coding chr3:127702956 chr3:127702959 synonymous SNV . 0 24 hm5C_associated_SNPs_77055 0 0 0 0 1 KBTBD12 chr3:127702940 3'AG 127702940 Downstream 20bp
chr7 140107592 140107592 1 + C T GBM 140107590 + 140107570 140107610 41 TACACTGAGACACAGCAGAACACGATTGGAGTGGACTTTAC TACACTGAGACACAGCAGAACATGATTGGAGTGGACTTTAC < 41bp 0.848776535363529 0.621852998064218 0.20796144 0.34563446 prediction 0.453847074598623 Functional Loss - RAB19 ENSG00000146955 CDS Human protein_coding chr7:140107590 chr7:140107592 nonsynonymous SNV 0.867 5 23 hm5C_associated_SNPs_77056 0 0 0 0 1 RAB19 chr7:140107647 5'GT 140107647 Upstream 56bp
chr5 78379064 78379064 1 + G A rs61058144 78379061 + 78379041 78379081 41 CGCTTTGGGCCCGACACCAGCTTGAAGACGATGGAGCTCAT CGCTTTGGGCCCGACACCAGCTTAAAGACGATGGAGCTCAT < 41bp 0.766107940262662 0.539184430056521 0.18191841 0.118683636 prediction 0.453847020412284 Functional Loss - BHMT2 ENSG00000132840 CDS Human protein_coding chr5:78379061 chr5:78379064 synonymous SNV . 0 24 hm5C_associated_SNPs_77057 0 0 0 0 1 BHMT2 chr5:78379015 3'AG 78379015 Downstream 50bp
chr1 89150278 89150278 1 + C T MESO 89150276 + 89150256 89150296 41 GGAGCGCAATGGCGTCCAACCCCGAACGGGGGGAGATTCTG GGAGCGCAATGGCGTCCAACCCTGAACGGGGGGAGATTCTG < 41bp 0.804160695727448 0.577243286497365 0.074804395 0.029564083 prediction 0.453834818460167 Functional Loss - PKN2 ENSG00000065243 CDS Human protein_coding chr1:89150276 chr1:89150278 synonymous SNV . 0 23 hm5C_associated_SNPs_77061 0 0 1 0 1 PKN2 chr1:89150311 5'GT 89150311 Upstream 34bp
chr10 94834933 94834933 1 + G A PRAD 94834930 + 94834910 94834950 41 TGAAGGCGCGGAACCTCATTCACGCGCGCATCGAGCAGAAC TGAAGGCGCGGAACCTCATTCACACGCGCATCGAGCAGAAC < 41bp 0.784588846523288 0.557674724766637 0.8163161 0.77174175 prediction 0.453828243513301 Functional Loss - CYP26A1 ENSG00000095596 CDS Human protein_coding chr10:94834930 chr10:94834933 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_77065 0 0 0 0 1 CYP26A1 chr10:94834906 3'AG 94834906 Downstream 28bp
chr9 27220087 27220087 1 + C T rs542612983 27220084 + 27220064 27220104 41 GGGATGACTTGTGCAGAACTCTACGAGAAGCTGCCCCAGGG GGGATGACTTGTGCAGAACTCTATGAGAAGCTGCCCCAGGG < 41bp 0.736594621586182 0.509682466328964 0.3392647 0.23235887 prediction 0.453824310514436 Functional Loss - TEK ENSG00000120156 CDS Human protein_coding chr9:27220084 chr9:27220087 synonymous SNV . 0 24 hm5C_associated_SNPs_77066 0 0 0 0 2 TEK chr9:27220047 3'AG 27220047 Downstream 41bp
chr9 27220087 27220087 1 + C T rs542612983 27220084 + 27220064 27220104 41 GGGATGACTTGTGCAGAACTCTACGAGAAGCTGCCCCAGGG GGGATGACTTGTGCAGAACTCTATGAGAAGCTGCCCCAGGG < 41bp 0.736594621586182 0.509682466328964 0.3392647 0.23235887 prediction 0.453824310514436 Functional Loss - TEK ENSG00000120156 CDS Human protein_coding chr9:27220084 chr9:27220087 synonymous SNV . 0 24 hm5C_associated_SNPs_77066 0 0 0 0 2 TEK chr9:27220143 5'GT 27220143 Upstream 57bp
chr16 816476 816476 1 + G A UCEC 816473 + 816453 816493 41 TGCTTGAAGTCAACAAAGGGCACGAAATGAGTCCTCAGGTG TGCTTGAAGTCAACAAAGGGCACAAAATGAGTCCTCAGGTG < 41bp 0.778262993518544 0.551351493862002 0.1638459 0.118186265 prediction 0.453822999313084 Functional Loss - MSLN ENSG00000102854 CDS Human protein_coding chr16:816473 chr16:816476 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_77067 0 0 0 0 1 MSLN chr16:816490 5'GT 816490 Upstream 15bp
chr20 3781697 3781697 1 + G T COAD 3781695 + 3781675 3781715 41 CTGGCAGAGTGGGCCAGCCGCAGGGAAGCCTTTGCCCAGAG CTGGCAGAGTGGGCCAGCCGCATGGAAGCCTTTGCCCAGAG < 41bp 0.907586938289925 0.680676880360161 0.7967029 0.16949078 prediction 0.453820115859528 Functional Loss - CDC25B ENSG00000101224 CDS Human protein_coding chr20:3781695 chr20:3781697 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_77068 0 0 0 0 2 CDC25B chr20:3781618 3'AG 3781618 Downstream 80bp
chr20 3781697 3781697 1 + G T COAD 3781695 + 3781675 3781715 41 CTGGCAGAGTGGGCCAGCCGCAGGGAAGCCTTTGCCCAGAG CTGGCAGAGTGGGCCAGCCGCATGGAAGCCTTTGCCCAGAG < 41bp 0.907586938289925 0.680676880360161 0.7967029 0.16949078 prediction 0.453820115859528 Functional Loss - CDC25B ENSG00000101224 CDS Human protein_coding chr20:3781695 chr20:3781697 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_77068 0 0 0 0 2 CDC25B chr20:3781740 5'GT 3781740 Upstream 44bp
chr3 33174168 33174168 1 + G A rs1135128 33174165 + 33174145 33174185 41 CACAGGGACACTTGGGGCCTCTCGGATGAGCACTTCCAGCC CACAGGGACACTTGGGGCCTCTCAGATGAGCACTTCCAGCC < 41bp 0.776468534714175 0.549559962064911 0.82639897 0.8451538 prediction 0.453817145298527 Functional Loss - CRTAP ENSG00000170275 CDS Human protein_coding chr3:33174165 chr3:33174168 synonymous SNV . 0 24 hm5C_associated_SNPs_77069 2 0 1 0 1 CRTAP chr3:33174192 5'GT 33174192 Upstream 25bp
chr11 113140941 113140941 1 - C T rs35515801 113140944 - 113140924 113140964 41 ATGAGGATGCCCACGATGGCCCCGGTGCTCAGGCCTGAGGT ATGAGGATGCCCACGATGGCCCCAGTGCTCAGGCCTGAGGT < 41bp 0.726904968567926 0.482521113831611 0.5871566 0.28213102 prediction 0.453809937135852 Functional Loss - NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113140944 chr11:113140941 synonymous SNV . 0 24 hm5C_associated_SNPs_77070 0 0 0 0 1 NCAM1 chr11:113140926 5'GT 113140926 Upstream 16bp
chr16 29857217 29857217 1 + C T STAD 29857215 + 29857195 29857235 41 AGAGACTGGAGCAGGAAGCCCGCGGCCGGCTTGAGCGGCAG AGAGACTGGAGCAGGAAGCCCGTGGCCGGCTTGAGCGGCAG < 41bp 0.826734892417076 0.599835767940272 0.7455972 0.47758368 prediction 0.453798248953609 Functional Loss - MVP ENSG00000013364 CDS Human protein_coding chr16:29857215 chr16:29857217 synonymous SNV . 0 23 hm5C_associated_SNPs_77073 0 0 1 0 2 MVP chr16:29857184 3'AG 29857184 Downstream 34bp
chr16 29857217 29857217 1 + C T STAD 29857215 + 29857195 29857235 41 AGAGACTGGAGCAGGAAGCCCGCGGCCGGCTTGAGCGGCAG AGAGACTGGAGCAGGAAGCCCGTGGCCGGCTTGAGCGGCAG < 41bp 0.826734892417076 0.599835767940272 0.7455972 0.47758368 prediction 0.453798248953609 Functional Loss - MVP ENSG00000013364 CDS Human protein_coding chr16:29857215 chr16:29857217 synonymous SNV . 0 23 hm5C_associated_SNPs_77073 0 0 1 0 2 MVP chr16:29857300 5'GT 29857300 Upstream 84bp
chr2 192265163 192265163 1 + C T UCEC 192265161 + 192265141 192265181 41 AAGCGCTGTAAGGAAGCAGTCACGACCATTGCTGCATATTG AAGCGCTGTAAGGAAGCAGTCATGACCATTGCTGCATATTG < 41bp 0.726894618674179 0.432462599008259 0.13819104 0.13883218 prediction 0.453789237348358 Functional Loss - MYO1B ENSG00000128641 CDS Human protein_coding chr2:192265161 chr2:192265163 nonsynonymous SNV 0.990 2 23 hm5C_associated_SNPs_77074 0 0 1 0 2 MYO1B chr2:192265108 3'AG 192265108 Downstream 56bp
chr2 192265163 192265163 1 + C T UCEC 192265161 + 192265141 192265181 41 AAGCGCTGTAAGGAAGCAGTCACGACCATTGCTGCATATTG AAGCGCTGTAAGGAAGCAGTCATGACCATTGCTGCATATTG < 41bp 0.726894618674179 0.432462599008259 0.13819104 0.13883218 prediction 0.453789237348358 Functional Loss - MYO1B ENSG00000128641 CDS Human protein_coding chr2:192265161 chr2:192265163 nonsynonymous SNV 0.990 2 23 hm5C_associated_SNPs_77074 0 0 1 0 2 MYO1B chr2:192265194 5'GT 192265194 Upstream 32bp
chrX 595501 595501 1 + C T UCEC 595499 + 595479 595519 41 TCTTCGACGAGACCCATTACCCCGACGCCTTCATGCGCGAG TCTTCGACGAGACCCATTACCCTGACGCCTTCATGCGCGAG < 41bp 0.726889889043336 0.44744558510663 0.174952 0.114126384 prediction 0.453779778086673 Functional Loss - SHOX ENSG00000185960 CDS Human protein_coding chrX:595499 chrX:595501 synonymous SNV . 0 23 hm5C_associated_SNPs_77076 0 0 0 0 1 SHOX chrX:595561 5'GT 595561 Upstream 61bp
chr19 46025462 46025462 1 + G A UCEC 46025459 + 46025439 46025479 41 CCGTCGGAGCACATAGAGCGCCGGGTCTCCAATGCAGGTGA CCGTCGGAGCACATAGAGCGCCGAGTCTCCAATGCAGGTGA < 41bp 0.726887563839302 0.476085767027526 0.7870311 0.05820021 prediction 0.453775127678604 Functional Loss - VASP ENSG00000125753 CDS Human protein_coding chr19:46025459 chr19:46025462 synonymous SNV . 0 24 hm5C_associated_SNPs_77078 0 0 1 0 2 VASP chr19:46025426 3'AG 46025426 Downstream 37bp
chr19 46025462 46025462 1 + G A UCEC 46025459 + 46025439 46025479 41 CCGTCGGAGCACATAGAGCGCCGGGTCTCCAATGCAGGTGA CCGTCGGAGCACATAGAGCGCCGAGTCTCCAATGCAGGTGA < 41bp 0.726887563839302 0.476085767027526 0.7870311 0.05820021 prediction 0.453775127678604 Functional Loss - VASP ENSG00000125753 CDS Human protein_coding chr19:46025459 chr19:46025462 synonymous SNV . 0 24 hm5C_associated_SNPs_77078 0 0 1 0 2 VASP chr19:46025475 5'GT 46025475 Upstream 14bp
chr4 40800884 40800884 1 + G A UCEC 40800881 + 40800861 40800901 41 AAGCTGTTGTTAAGAAAGCACTGGAATTTCAAGACCTTGGG AAGCTGTTGTTAAGAAAGCACTGAAATTTCAAGACCTTGGG < 41bp 0.733287725402377 0.506401150072837 0.21793082 0.15498596 prediction 0.453773150659081 Functional Loss - NSUN7 ENSG00000179299 CDS Human protein_coding chr4:40800881 chr4:40800884 nonsynonymous SNV 0.936 1 24 hm5C_associated_SNPs_77079 0 0 0 0 2 NSUN7 chr4:40800804 3'AG 40800804 Downstream 81bp
chr4 40800884 40800884 1 + G A UCEC 40800881 + 40800861 40800901 41 AAGCTGTTGTTAAGAAAGCACTGGAATTTCAAGACCTTGGG AAGCTGTTGTTAAGAAAGCACTGAAATTTCAAGACCTTGGG < 41bp 0.733287725402377 0.506401150072837 0.21793082 0.15498596 prediction 0.453773150659081 Functional Loss - NSUN7 ENSG00000179299 CDS Human protein_coding chr4:40800881 chr4:40800884 nonsynonymous SNV 0.936 1 24 hm5C_associated_SNPs_77079 0 0 0 0 2 NSUN7 chr4:40800921 5'GT 40800921 Upstream 38bp
chr5 138268273 138268273 1 + G A UCEC 138268270 + 138268250 138268290 41 GCCTGCTCTCTCTTCAGTGCCCCGACTCGGCTTGCAAGCAG GCCTGCTCTCTCTTCAGTGCCCCAACTCGGCTTGCAAGCAG < 41bp 0.726885989144751 0.490103644987216 0.16297105 0.12269139 prediction 0.453771978289503 Functional Loss - CTNNA1 ENSG00000044115 CDS Human protein_coding chr5:138268270 chr5:138268273 nonsynonymous SNV 0.911 2 24 hm5C_associated_SNPs_77080 0 0 1 0 1 CTNNA1 chr5:138268267 3'AG 138268267 Downstream 7bp
chr20 5990444 5990444 1 + G T GBM 5990441 + 5990421 5990461 41 TATGAAAACCCATGGACAATCCCGAATATGTTGTCAATGAC TATGAAAACCCATGGACAATCCCTAATATGTTGTCAATGAC < 41bp 0.72687908236523 0.348098083293481 0.2554171 0.117923945 prediction 0.453758164730459 Functional Loss - CRLS1 ENSG00000088766 CDS Human protein_coding chr20:5990441 chr20:5990444 synonymous SNV . 0 24 hm5C_associated_SNPs_77084 0 0 1 1 1 CRLS1 chr20:5990421 3'AG 5990421 Downstream 24bp
chr20 5990443 5990443 1 + C T LUSC 5990441 + 5990421 5990461 41 TATGAAAACCCATGGACAATCCCGAATATGTTGTCAATGAC TATGAAAACCCATGGACAATCCTGAATATGTTGTCAATGAC < 41bp 0.72687908236523 0.435469316872725 0.2554171 0.24370605 prediction 0.453758164730459 Functional Loss - CRLS1 ENSG00000088766 CDS Human protein_coding chr20:5990441 chr20:5990443 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_77085 0 0 1 1 1 CRLS1 chr20:5990421 3'AG 5990421 Downstream 23bp
chr2 131890529 131890529 1 + C T SKCM 131890527 + 131890507 131890547 41 GACATCCGTGGTTTCCTCACCTCCACCATACACGGCCTATG GACATCCGTGGTTTCCTCACCTTCACCATACACGGCCTATG < 41bp 0.726878958078919 0.445433218621388 0.87216413 0.06344545 prediction 0.453757916157838 Functional Loss - PLEKHB2 ENSG00000115762 CDS Human protein_coding chr2:131890527 chr2:131890529 nonsynonymous SNV 0.003 2 23 hm5C_associated_SNPs_77086 0 0 1 0 3 PLEKHB2 chr2:131890475 3'AG 131890475 Downstream 55bp
chr2 131890529 131890529 1 + C T SKCM 131890527 + 131890507 131890547 41 GACATCCGTGGTTTCCTCACCTCCACCATACACGGCCTATG GACATCCGTGGTTTCCTCACCTTCACCATACACGGCCTATG < 41bp 0.726878958078919 0.445433218621388 0.87216413 0.06344545 prediction 0.453757916157838 Functional Loss - PLEKHB2 ENSG00000115762 CDS Human protein_coding chr2:131890527 chr2:131890529 nonsynonymous SNV 0.003 2 23 hm5C_associated_SNPs_77086 0 0 1 0 3 PLEKHB2 chr2:131890564 5'GT 131890564 Upstream 36bp
chr2 131890529 131890529 1 + C T SKCM 131890527 + 131890507 131890547 41 GACATCCGTGGTTTCCTCACCTCCACCATACACGGCCTATG GACATCCGTGGTTTCCTCACCTTCACCATACACGGCCTATG < 41bp 0.726878958078919 0.445433218621388 0.87216413 0.06344545 prediction 0.453757916157838 Functional Loss - PLEKHB2 ENSG00000115762 CDS Human protein_coding chr2:131890527 chr2:131890529 nonsynonymous SNV 0.003 2 23 hm5C_associated_SNPs_77086 0 0 1 0 3 PLEKHB2 chr2:131890588 5'GT 131890588 Upstream 60bp
chr2 131890528 131890528 1 + T C STAD 131890527 + 131890507 131890547 41 GACATCCGTGGTTTCCTCACCTCCACCATACACGGCCTATG GACATCCGTGGTTTCCTCACCCCCACCATACACGGCCTATG < 41bp 0.726878958078919 0.461080342144683 0.87216413 0.09242797 prediction 0.453757916157838 Functional Loss - PLEKHB2 ENSG00000115762 CDS Human protein_coding chr2:131890527 chr2:131890528 synonymous SNV . 0 22 hm5C_associated_SNPs_77087 0 0 1 0 3 PLEKHB2 chr2:131890475 3'AG 131890475 Downstream 54bp
chr2 131890528 131890528 1 + T C STAD 131890527 + 131890507 131890547 41 GACATCCGTGGTTTCCTCACCTCCACCATACACGGCCTATG GACATCCGTGGTTTCCTCACCCCCACCATACACGGCCTATG < 41bp 0.726878958078919 0.461080342144683 0.87216413 0.09242797 prediction 0.453757916157838 Functional Loss - PLEKHB2 ENSG00000115762 CDS Human protein_coding chr2:131890527 chr2:131890528 synonymous SNV . 0 22 hm5C_associated_SNPs_77087 0 0 1 0 3 PLEKHB2 chr2:131890564 5'GT 131890564 Upstream 37bp
chr2 131890528 131890528 1 + T C STAD 131890527 + 131890507 131890547 41 GACATCCGTGGTTTCCTCACCTCCACCATACACGGCCTATG GACATCCGTGGTTTCCTCACCCCCACCATACACGGCCTATG < 41bp 0.726878958078919 0.461080342144683 0.87216413 0.09242797 prediction 0.453757916157838 Functional Loss - PLEKHB2 ENSG00000115762 CDS Human protein_coding chr2:131890527 chr2:131890528 synonymous SNV . 0 22 hm5C_associated_SNPs_77087 0 0 1 0 3 PLEKHB2 chr2:131890588 5'GT 131890588 Upstream 61bp
chr11 36669597 36669597 1 + G T UCEC 36669595 + 36669575 36669615 41 TGCTTCCAGGAGAAGTGGAGCAGGATGTAAGCACCAGCATT TGCTTCCAGGAGAAGTGGAGCATGATGTAAGCACCAGCATT < 41bp 0.726878778474129 0.385248405943007 0.8925342 0.8309537 prediction 0.453757556948257 Functional Loss - C11orf74 ENSG00000166352 CDS Human protein_coding chr11:36669595 chr11:36669597 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_77088 0 0 0 2 1 C11orf74 chr11:36669566 3'AG 36669566 Downstream 32bp
chrX 152087623 152087623 1 + G T LUSC 152087621 + 152087601 152087641 41 TCTCCTCAGATGAACAGAAACGGAGGTAATGGAATGGTGCC TCTCCTCAGATGAACAGAAACGTAGGTAATGGAATGGTGCC < 41bp 0.726874814202499 0.37250910619072 0.9099511 0.33566606 prediction 0.453749628404998 Functional Loss - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152087621 chrX:152087623 synonymous SNV . 0 23 hm5C_associated_SNPs_77091 0 0 0 0 1 ZNF185 chrX:152087625 5'GT 152087625 Upstream 3bp
chr2 101587467 101587467 1 + G A SKCM 101587464 + 101587444 101587484 41 CTGTACAGTTACGCAGATGTCCGGGTGGAAAGGAGGCAGGA CTGTACAGTTACGCAGATGTCCGAGTGGAAAGGAGGCAGGA < 41bp 0.777689000934716 0.550817227415404 0.9166081 0.545586 prediction 0.453743547038624 Functional Loss - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101587464 chr2:101587467 synonymous SNV . 0 24 hm5C_associated_SNPs_77094 0 0 1 0 2 NPAS2 chr2:101587452 3'AG 101587452 Downstream 16bp
chr2 101587467 101587467 1 + G A SKCM 101587464 + 101587444 101587484 41 CTGTACAGTTACGCAGATGTCCGGGTGGAAAGGAGGCAGGA CTGTACAGTTACGCAGATGTCCGAGTGGAAAGGAGGCAGGA < 41bp 0.777689000934716 0.550817227415404 0.9166081 0.545586 prediction 0.453743547038624 Functional Loss - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101587464 chr2:101587467 synonymous SNV . 0 24 hm5C_associated_SNPs_77094 0 0 1 0 2 NPAS2 chr2:101587536 5'GT 101587536 Upstream 70bp
chr5 147499622 147499622 1 + C T STAD 147499619 + 147499599 147499639 41 ATGAAAAATGGAAAACTCATCTGCACTCGAGAAAGTGACCC ATGAAAAATGGAAAACTCATCTGTACTCGAGAAAGTGACCC < 41bp 0.732722921333822 0.505854945202266 0.5354804 0.3614505 prediction 0.453735952263111 Functional Loss - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147499619 chr5:147499622 synonymous SNV . 0 24 hm5C_associated_SNPs_77097 0 0 0 0 2 SPINK5 chr5:147499572 3'AG 147499572 Downstream 51bp
chr5 147499622 147499622 1 + C T STAD 147499619 + 147499599 147499639 41 ATGAAAAATGGAAAACTCATCTGCACTCGAGAAAGTGACCC ATGAAAAATGGAAAACTCATCTGTACTCGAGAAAGTGACCC < 41bp 0.732722921333822 0.505854945202266 0.5354804 0.3614505 prediction 0.453735952263111 Functional Loss - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147499619 chr5:147499622 synonymous SNV . 0 24 hm5C_associated_SNPs_77097 0 0 0 0 2 SPINK5 chr5:147499699 5'GT 147499699 Upstream 78bp
chrX 48121246 48121246 1 + C T UCEC 48121244 + 48121224 48121264 41 GGCAGGCTCCACAGAATCATCCCGAAGGTGAGTATCTCTCA GGCAGGCTCCACAGAATCATCCTGAAGGTGAGTATCTCTCA < 41bp 0.833275271817777 0.606409355377515 0.20550823 0.08873659 prediction 0.453731832880524 Functional Loss - SSX1 ENSG00000126752 CDS Human protein_coding chrX:48121244 chrX:48121246 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_77099 0 0 1 0 2 SSX1 chrX:48121201 3'AG 48121201 Downstream 46bp
chrX 48121246 48121246 1 + C T UCEC 48121244 + 48121224 48121264 41 GGCAGGCTCCACAGAATCATCCCGAAGGTGAGTATCTCTCA GGCAGGCTCCACAGAATCATCCTGAAGGTGAGTATCTCTCA < 41bp 0.833275271817777 0.606409355377515 0.20550823 0.08873659 prediction 0.453731832880524 Functional Loss - SSX1 ENSG00000126752 CDS Human protein_coding chrX:48121244 chrX:48121246 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_77099 0 0 1 0 2 SSX1 chrX:48121250 5'GT 48121250 Upstream 5bp
chr19 13186419 13186419 1 + G A READ 13186416 + 13186396 13186436 41 CTGTTGATGACGTGTTCTATCCCGGGACAGGCCGTTCCCCA CTGTTGATGACGTGTTCTATCCCAGGACAGGCCGTTCCCCA < 41bp 0.726856400646789 0.478790061910543 0.88929695 0.7799739 prediction 0.453712801293578 Functional Loss - NFIX ENSG00000008441 CDS Human protein_coding chr19:13186416 chr19:13186419 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_77105 0 0 0 0 2 NFIX chr19:13186349 3'AG 13186349 Downstream 71bp
chr19 13186419 13186419 1 + G A READ 13186416 + 13186396 13186436 41 CTGTTGATGACGTGTTCTATCCCGGGACAGGCCGTTCCCCA CTGTTGATGACGTGTTCTATCCCAGGACAGGCCGTTCCCCA < 41bp 0.726856400646789 0.478790061910543 0.88929695 0.7799739 prediction 0.453712801293578 Functional Loss - NFIX ENSG00000008441 CDS Human protein_coding chr19:13186416 chr19:13186419 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_77105 0 0 0 0 2 NFIX chr19:13186485 5'GT 13186485 Upstream 67bp
chrX 53455019 53455019 1 + G A BLCA 53455016 + 53454996 53455036 41 CGGGAAGCAGCAGAAAGAAGCAAGGAGGCAGCTTATGGTAA CGGGAAGCAGCAGAAAGAAGCAAAGAGGCAGCTTATGGTAA < 41bp 0.800874825822808 0.574028818162851 0.7509837 0.25839788 prediction 0.453692015319914 Functional Loss - RIBC1 ENSG00000158423 CDS Human protein_coding chrX:53455016 chrX:53455019 synonymous SNV . 0 24 hm5C_associated_SNPs_77109 0 0 0 0 2 RIBC1 chrX:53454951 3'AG 53454951 Downstream 69bp
chrX 53455019 53455019 1 + G A BLCA 53455016 + 53454996 53455036 41 CGGGAAGCAGCAGAAAGAAGCAAGGAGGCAGCTTATGGTAA CGGGAAGCAGCAGAAAGAAGCAAAGAGGCAGCTTATGGTAA < 41bp 0.800874825822808 0.574028818162851 0.7509837 0.25839788 prediction 0.453692015319914 Functional Loss - RIBC1 ENSG00000158423 CDS Human protein_coding chrX:53455016 chrX:53455019 synonymous SNV . 0 24 hm5C_associated_SNPs_77109 0 0 0 0 2 RIBC1 chrX:53455032 5'GT 53455032 Upstream 14bp
chr1 227946777 227946777 1 + G A UCEC 227946774 + 227946754 227946794 41 ACACCACCGGAAACAAAGCCCAGGGAAGATGTCTCCATGAC ACACCACCGGAAACAAAGCCCAGAGAAGATGTCTCCATGAC < 41bp 0.741720013064549 0.514874868072318 0.62360543 0.33158326 prediction 0.453690289984462 Functional Loss - SNAP47 ENSG00000143740 CDS Human protein_coding chr1:227946774 chr1:227946777 synonymous SNV . 0 24 hm5C_associated_SNPs_77110 0 0 1 0 1 SNAP47 chr1:227946696 3'AG 227946696 Downstream 82bp
chr1 40214601 40214601 1 + G A BLCA 40214598 + 40214578 40214618 41 ATTTCCGCTGCCTGTGCACTCATGAAAAGGGCTTTGGCTTT ATTTCCGCTGCCTGTGCACTCATAAAAAGGGCTTTGGCTTT < 41bp 0.726844450912682 0.496743273982315 0.35738575 0.16283524 prediction 0.453688901825364 Functional Loss - PPIE ENSG00000084072 CDS Human protein_coding chr1:40214598 chr1:40214601 nonsynonymous SNV 0.734 4 24 hm5C_associated_SNPs_77111 0 0 1 0 1 PPIE chr1:40214575 3'AG 40214575 Downstream 27bp
chr16 70690941 70690941 1 + G A LGG 70690938 + 70690918 70690958 41 TCAGTGCCACTGAGTCGGTGCAGGACGTGCTGCTCGAGGGC TCAGTGCCACTGAGTCGGTGCAGAACGTGCTGCTCGAGGGC < 41bp 0.807118135244523 0.580275130384903 0.329849 0.14483693 prediction 0.453686009719241 Functional Loss - IL34 ENSG00000157368 CDS Human protein_coding chr16:70690938 chr16:70690941 nonsynonymous SNV 0.957 0 24 hm5C_associated_SNPs_77112 0 0 0 0 3 IL34 chr16:70690863 3'AG 70690863 Downstream 79bp
chr16 70690941 70690941 1 + G A LGG 70690938 + 70690918 70690958 41 TCAGTGCCACTGAGTCGGTGCAGGACGTGCTGCTCGAGGGC TCAGTGCCACTGAGTCGGTGCAGAACGTGCTGCTCGAGGGC < 41bp 0.807118135244523 0.580275130384903 0.329849 0.14483693 prediction 0.453686009719241 Functional Loss - IL34 ENSG00000157368 CDS Human protein_coding chr16:70690938 chr16:70690941 nonsynonymous SNV 0.957 0 24 hm5C_associated_SNPs_77112 0 0 0 0 3 IL34 chr16:70690866 3'AG 70690866 Downstream 76bp
chr16 70690941 70690941 1 + G A LGG 70690938 + 70690918 70690958 41 TCAGTGCCACTGAGTCGGTGCAGGACGTGCTGCTCGAGGGC TCAGTGCCACTGAGTCGGTGCAGAACGTGCTGCTCGAGGGC < 41bp 0.807118135244523 0.580275130384903 0.329849 0.14483693 prediction 0.453686009719241 Functional Loss - IL34 ENSG00000157368 CDS Human protein_coding chr16:70690938 chr16:70690941 nonsynonymous SNV 0.957 0 24 hm5C_associated_SNPs_77112 0 0 0 0 3 IL34 chr16:70691024 5'GT 70691024 Upstream 84bp
chr16 89696899 89696899 1 + G A LUAD 89696896 + 89696876 89696916 41 CGGGACGAGGCAGAGAGGATCATGAGGGACTCCCCTGTCAT CGGGACGAGGCAGAGAGGATCATAAGGGACTCCCCTGTCAT < 41bp 0.778832000521968 0.552000963523802 0.8097731 0.41223243 prediction 0.453662073996332 Functional Loss - DPEP1 ENSG00000015413 CDS Human protein_coding chr16:89696896 chr16:89696899 nonsynonymous SNV 0.153 2 24 hm5C_associated_SNPs_77116 0 0 0 0 1 DPEP1 chr16:89696922 5'GT 89696922 Upstream 24bp
chr19 2810444 2810444 1 + G A COAD 2810441 + 2810421 2810461 41 CCGCACAGGCAGCGCCGTGCCCCGGGAGCTCCTGGAGAAGC CCGCACAGGCAGCGCCGTGCCCCAGGAGCTCCTGGAGAAGC < 41bp 0.765903760928351 0.539081032413081 0.07004157 0.02351427 prediction 0.45364545703054 Functional Loss - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2810441 chr19:2810444 nonsynonymous SNV 0.057 0 24 hm5C_associated_SNPs_77120 0 0 1 0 1 THOP1 chr19:2810488 5'GT 2810488 Upstream 45bp
chr7 54617843 54617843 1 + C T COAD 54617841 + 54617821 54617861 41 CCTCAAGTGGTAGCCAAAATCCCCAAACAAAGTCCACAATC CCTCAAGTGGTAGCCAAAATCCTCAAACAAAGTCCACAATC < 41bp 0.851778043202069 0.62495916050825 0.31945026 0.17179081 prediction 0.453637765387638 Functional Loss - VSTM2A ENSG00000170419 CDS Human protein_coding chr7:54617841 chr7:54617843 nonsynonymous SNV 0.982 4 23 hm5C_associated_SNPs_77125 0 0 0 0 1 VSTM2A chr7:54617863 5'GT 54617863 Upstream 21bp
chr19 39398291 39398291 1 + G C BLCA 39398287 + 39398267 39398307 41 AGCAGTAGCGACAGCGACAGCGGAGACGAGGGCGTGAGTCA AGCAGTAGCGACAGCGACAGCGGACACGAGGGCGTGAGTCA < 41bp 0.851064121160397 0.624257638702678 0.8471186 0.6940749 prediction 0.453612964915439 Functional Loss - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39398287 chr19:39398291 nonsynonymous SNV 0.370 3 25 hm5C_associated_SNPs_77131 0 0 0 0 1 NFKBIB chr19:39398299 5'GT 39398299 Upstream 9bp
chr14 94582184 94582184 1 + C T rs143275071 94582182 + 94582162 94582202 41 TTCACTGCGGCGGGAATCGCCTCGTCCTCCATAGCAGCCAA TTCACTGCGGCGGGAATCGCCTTGTCCTCCATAGCAGCCAA < 41bp 0.822999160909661 0.596197643110497 0.1852856 0.06417358 prediction 0.453603035598329 Functional Loss - IFI27 ENSG00000165949 CDS Human protein_coding chr14:94582182 chr14:94582184 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_77137 0 0 0 0 1 IFI27 chr14:94582127 3'AG 94582127 Downstream 58bp
chr1 150307438 150307438 1 + C T LIHC 150307435 + 150307415 150307455 41 GTTAAAAGACCAAACGAAACCTACACCACTGATCCTGGATG GTTAAAAGACCAAACGAAACCTATACCACTGATCCTGGATG < 41bp 0.728314856114745 0.501518521900358 0.1355538 0.09959754 prediction 0.453592668428773 Functional Loss - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150307435 chr1:150307438 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_77141 0 0 1 1 1 PRPF3 chr1:150307406 3'AG 150307406 Downstream 33bp
chr3 185689459 185689459 1 + G T SARC 185689457 + 185689437 185689477 41 GGTCTGAAGCACGTGGTGTACAGCGGCCTGGAGAACGTCAA GGTCTGAAGCACGTGGTGTACATCGGCCTGGAGAACGTCAA < 41bp 0.901315275201552 0.674520606876509 0.29750687 0.18854994 prediction 0.453589336650084 Functional Loss - NMRAL2P ENSG00000171658 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:185689457 chr3:185689459 . . 0 23 hm5C_associated_SNPs_77142 0 0 0 0 1 NMRAL2P chr3:185689404 3'AG 185689404 Downstream 56bp
chr22 49103655 49103655 1 + C T HNSC 49103653 + 49103633 49103673 41 GGCGGGAGGATAAAGACCACCACGGTATGTGGCCCTCGGCT GGCGGGAGGATAAAGACCACCATGGTATGTGGCCCTCGGCT < 41bp 0.804235669025251 0.577441238293261 0.32266796 0.5886284 prediction 0.453588861463981 Functional Loss - FAM19A5 ENSG00000219438 CDS Human protein_coding chr22:49103653 chr22:49103655 nonsynonymous SNV 0.981 3 23 hm5C_associated_SNPs_77143 0 0 0 0 1 FAM19A5 chr22:49103656 5'GT 49103656 Upstream 2bp
chr7 150741112 150741112 1 + G A UCEC 150741109 + 150741089 150741129 41 GAAGCAGCGCCTGGCCATCGCCCGAGCCCTTATCAAGCAGC GAAGCAGCGCCTGGCCATCGCCCAAGCCCTTATCAAGCAGC < 41bp 0.726791829987986 0.480074104807922 0.5408814 0.21970701 prediction 0.453583659975971 Functional Loss - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150741109 chr7:150741112 nonsynonymous SNV 0.964 5 24 hm5C_associated_SNPs_77144 0 0 1 0 1 ABCB8 chr7:150741058 3'AG 150741058 Downstream 55bp
chr19 6854109 6854109 1 + G T HNSC 6854107 + 6854087 6854127 41 GGCGAGGGGAGATCTATGGCCGGGTGAGGCAGGCAGGGCTG GGCGAGGGGAGATCTATGGCCGTGTGAGGCAGGCAGGGCTG < 41bp 0.896313281573897 0.669521642452873 0.91245043 0.83434224 prediction 0.453583278242047 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6854107 chr19:6854109 synonymous SNV . 0 23 hm5C_associated_SNPs_77145 0 0 0 0 1 VAV1 chr19:6854109 5'GT 6854109 Upstream 1bp
chr22 39066939 39066939 1 + G A UCEC 39066936 + 39066916 39066956 41 CTGGGCTTGGAATACGGATCCCCGACTATGAACCTGGCAGG CTGGGCTTGGAATACGGATCCCCAACTATGAACCTGGCAGG < 41bp 0.788325969821176 0.561538536870753 0.07469264 0.12732318 prediction 0.453574865900846 Functional Loss - CBY1 ENSG00000100211 CDS Human protein_coding chr22:39066936 chr22:39066939 synonymous SNV . 0 24 hm5C_associated_SNPs_77147 0 0 1 0 2 CBY1 chr22:39066889 3'AG 39066889 Downstream 51bp
chr22 39066939 39066939 1 + G A UCEC 39066936 + 39066916 39066956 41 CTGGGCTTGGAATACGGATCCCCGACTATGAACCTGGCAGG CTGGGCTTGGAATACGGATCCCCAACTATGAACCTGGCAGG < 41bp 0.788325969821176 0.561538536870753 0.07469264 0.12732318 prediction 0.453574865900846 Functional Loss - CBY1 ENSG00000100211 CDS Human protein_coding chr22:39066936 chr22:39066939 synonymous SNV . 0 24 hm5C_associated_SNPs_77147 0 0 1 0 2 CBY1 chr22:39066994 5'GT 39066994 Upstream 56bp
chr3 44929229 44929229 1 + G T UCEC 44929226 + 44929206 44929246 41 CACCCTGGTGGTGCTCGACCCGAGGACGCCCTCAGACCACT CACCCTGGTGGTGCTCGACCCGATGACGCCCTCAGACCACT < 41bp 0.726787182838412 0.322236197437841 0.8679153 0.31713474 prediction 0.453574365676825 Functional Loss - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44929226 chr3:44929229 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_77148 0 0 0 0 2 TGM4 chr3:44929181 3'AG 44929181 Downstream 49bp
chr3 44929229 44929229 1 + G T UCEC 44929226 + 44929206 44929246 41 CACCCTGGTGGTGCTCGACCCGAGGACGCCCTCAGACCACT CACCCTGGTGGTGCTCGACCCGATGACGCCCTCAGACCACT < 41bp 0.726787182838412 0.322236197437841 0.8679153 0.31713474 prediction 0.453574365676825 Functional Loss - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44929226 chr3:44929229 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_77148 0 0 0 0 2 TGM4 chr3:44929287 5'GT 44929287 Upstream 59bp
chr19 1430334 1430334 1 + C T LUSC 1430332 + 1430312 1430352 41 TCCCCCTCCCCAGGGCTTCCCTCAGGGCTACGGTGCCCCGC TCCCCCTCCCCAGGGCTTCCCTTAGGGCTACGGTGCCCCGC < 41bp 0.825045676137233 0.59825920771364 0.82125497 0.4517094 prediction 0.453572936847186 Functional Loss - DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1430332 chr19:1430334 stopgain 0.997 1 23 hm5C_associated_SNPs_77150 0 0 1 0 1 DAZAP1 chr19:1430361 5'GT 1430361 Upstream 28bp
chr7 134221470 134221470 1 + G T UCEC 134221467 + 134221447 134221487 41 GTCTCCAATTTCAGCCACTTCCAGATCGAGAAGCTCTTGAA GTCTCCAATTTCAGCCACTTCCATATCGAGAAGCTCTTGAA < 41bp 0.726782425895917 0.332255283548321 0.2931881 0.117723286 prediction 0.453564851791834 Functional Loss - AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134221467 chr7:134221470 nonsynonymous SNV 0.837 4 24 hm5C_associated_SNPs_77153 0 0 1 0 2 AKR1B10 chr7:134221402 3'AG 134221402 Downstream 69bp
chr7 134221470 134221470 1 + G T UCEC 134221467 + 134221447 134221487 41 GTCTCCAATTTCAGCCACTTCCAGATCGAGAAGCTCTTGAA GTCTCCAATTTCAGCCACTTCCATATCGAGAAGCTCTTGAA < 41bp 0.726782425895917 0.332255283548321 0.2931881 0.117723286 prediction 0.453564851791834 Functional Loss - AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134221467 chr7:134221470 nonsynonymous SNV 0.837 4 24 hm5C_associated_SNPs_77153 0 0 1 0 2 AKR1B10 chr7:134221524 5'GT 134221524 Upstream 55bp
chr19 55106865 55106865 1 + T C rs373854 55106864 + 55106844 55106884 41 ATCTCCTGGAGCTCCTGGTCCTAGGTGAGAAATTCACAGCA ATCTCCTGGAGCTCCTGGTCCCAGGTGAGAAATTCACAGCA < 41bp 0.765848820292154 0.539067192546075 0.7319858 0.91387427 prediction 0.453563255492157 Functional Loss - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55106864 chr19:55106865 nonsynonymous SNV 0.045 0 22 hm5C_associated_SNPs_77154 0 0 0 0 1 LILRA1 chr19:55106867 5'GT 55106867 Upstream 3bp
chr17 19285703 19285703 1 + C T SKCM 19285701 + 19285681 19285721 41 CCTGGCCTGCCGCCCCCAGACGCCGGGGGAGCCCCTCAGTC CCTGGCCTGCCGCCCCCAGACGTCGGGGGAGCCCCTCAGTC < 41bp 0.81045182592466 0.583670744039342 0.5165939 0.7623111 prediction 0.453562163770636 Functional Loss - MAPK7 ENSG00000166484 CDS Human protein_coding chr17:19285701 chr17:19285703 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_77155 0 0 0 0 1 MAPK7 chr17:19285779 5'GT 19285779 Upstream 77bp
chr16 675478 675478 1 + G T UCEC 675476 + 675456 675496 41 ACCAACCGCTGGTCCTTTGACGGCATCGACCGCTGGATCAA ACCAACCGCTGGTCCTTTGACGTCATCGACCGCTGGATCAA < 41bp 0.90375802979967 0.676977067628819 0.41950706 0.12326288 prediction 0.453561924341701 Functional Loss - RAB40C ENSG00000197562 CDS Human protein_coding chr16:675476 chr16:675478 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_77156 0 0 1 0 2 RAB40C chr16:675432 3'AG 675432 Downstream 47bp
chr16 675478 675478 1 + G T UCEC 675476 + 675456 675496 41 ACCAACCGCTGGTCCTTTGACGGCATCGACCGCTGGATCAA ACCAACCGCTGGTCCTTTGACGTCATCGACCGCTGGATCAA < 41bp 0.90375802979967 0.676977067628819 0.41950706 0.12326288 prediction 0.453561924341701 Functional Loss - RAB40C ENSG00000197562 CDS Human protein_coding chr16:675476 chr16:675478 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_77156 0 0 1 0 2 RAB40C chr16:675509 5'GT 675509 Upstream 32bp
chr7 65551751 65551751 1 + G A UCEC 65551748 + 65551728 65551768 41 CAGCCACGCCGTGGCACTGACCCGAGACTCTGAGCGGCTGC CAGCCACGCCGTGGCACTGACCCAAGACTCTGAGCGGCTGC < 41bp 0.772937438506346 0.546158444191486 0.28018254 0.16132101 prediction 0.453557988629719 Functional Loss - ASL ENSG00000126522 CDS Human protein_coding chr7:65551748 chr7:65551751 nonsynonymous SNV 0.930 3 24 hm5C_associated_SNPs_77157 1 0 1 0 2 ASL chr7:65551731 3'AG 65551731 Downstream 21bp
chr7 65551751 65551751 1 + G A UCEC 65551748 + 65551728 65551768 41 CAGCCACGCCGTGGCACTGACCCGAGACTCTGAGCGGCTGC CAGCCACGCCGTGGCACTGACCCAAGACTCTGAGCGGCTGC < 41bp 0.772937438506346 0.546158444191486 0.28018254 0.16132101 prediction 0.453557988629719 Functional Loss - ASL ENSG00000126522 CDS Human protein_coding chr7:65551748 chr7:65551751 nonsynonymous SNV 0.930 3 24 hm5C_associated_SNPs_77157 1 0 1 0 2 ASL chr7:65551808 5'GT 65551808 Upstream 58bp
chr1 44456052 44456052 1 + C T LUAD 44456050 + 44456030 44456070 41 GTACCAGGTCTTGGAGGTGTCTCGGCAACCACTCTTCACCA GTACCAGGTCTTGGAGGTGTCTTGGCAACCACTCTTCACCA < 41bp 0.815417689676513 0.588638743234949 0.5490255 0.26683894 prediction 0.453557892883127 Functional Loss - B4GALT2 ENSG00000117411 CDS Human protein_coding chr1:44456050 chr1:44456052 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_77158 0 0 1 0 1 B4GALT2 chr1:44455970 3'AG 44455970 Downstream 83bp
chr19 7591450 7591450 1 + G A LUAD 7591447 + 7591427 7591467 41 GATGACACCTTCGCAGCCTACACGCGGGAGCAGCTGTACCA GATGACACCTTCGCAGCCTACACACGGGAGCAGCTGTACCA < 41bp 0.726765407263329 0.486657862639405 0.13614088 0.049461395 prediction 0.453530814526659 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7591447 chr19:7591450 synonymous SNV . 0 24 hm5C_associated_SNPs_77162 0 0 0 0 1 MCOLN1 chr19:7591492 5'GT 7591492 Upstream 43bp
chr1 180235547 180235547 1 + C T PRAD 180235545 + 180235525 180235565 41 AGGCGCTTCGGCACAAAATGCACGGCCTGCCAGCAGGGTAT AGGCGCTTCGGCACAAAATGCATGGCCTGCCAGCAGGGTAT < 41bp 0.798801059810537 0.572036718319875 0.48173055 0.3575185 prediction 0.453528682981325 Functional Loss - LHX4 ENSG00000121454 CDS Human protein_coding chr1:180235545 chr1:180235547 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_77163 0 0 0 0 1 LHX4 chr1:180235527 3'AG 180235527 Downstream 21bp
chr8 144295155 144295155 1 + G A LUSC 144295152 + 144295132 144295172 41 CGTCCGGCGAGATGAAGGCGCTCGGGGCTGTCCTGCTTGCC CGTCCGGCGAGATGAAGGCGCTCAGGGCTGTCCTGCTTGCC < 41bp 0.77697160478201 0.550207427812811 0.26883906 0.2543963 prediction 0.453528353938398 Functional Loss - GPIHBP1 ENSG00000182851 CDS Human other chr8:144295152 chr8:144295155 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_77164 0 0 0 0 1 GPIHBP1 chr8:144295194 5'GT 144295194 Upstream 40bp
chr13 26125580 26125580 1 + G A rs183889134 26125577 + 26125557 26125597 41 TTGGTCATGGCCTTGGTGAGCTCGGCGGGGGCCCTGTACTG TTGGTCATGGCCTTGGTGAGCTCAGCGGGGGCCCTGTACTG < 41bp 0.732733760043506 0.505975559779537 0.33839235 0.30529737 prediction 0.453516400527937 Functional Loss - ATP8A2 ENSG00000132932 CDS Human protein_coding chr13:26125577 chr13:26125580 synonymous SNV . 0 24 hm5C_associated_SNPs_77166 0 0 0 0 1 ATP8A2 chr13:26125641 5'GT 26125641 Upstream 62bp
chr11 71929638 71929638 1 + A T UCEC 71929634 + 71929614 71929654 41 CAGGGACAGAAAGACATGGTCTGGAAATGGATGCCACTTCT CAGGGACAGAAAGACATGGTCTGGTAATGGATGCCACTTCT < 41bp 0.875186620510276 0.648430286800636 0.443828 0.33550134 prediction 0.453512667419279 Functional Loss - FOLR2 ENSG00000165457 CDS Human protein_coding chr11:71929634 chr11:71929638 stopgain 0.685 0 25 hm5C_associated_SNPs_77167 0 0 0 0 2 FOLR2 chr11:71929605 3'AG 71929605 Downstream 34bp
chr11 71929638 71929638 1 + A T UCEC 71929634 + 71929614 71929654 41 CAGGGACAGAAAGACATGGTCTGGAAATGGATGCCACTTCT CAGGGACAGAAAGACATGGTCTGGTAATGGATGCCACTTCT < 41bp 0.875186620510276 0.648430286800636 0.443828 0.33550134 prediction 0.453512667419279 Functional Loss - FOLR2 ENSG00000165457 CDS Human protein_coding chr11:71929634 chr11:71929638 stopgain 0.685 0 25 hm5C_associated_SNPs_77167 0 0 0 0 2 FOLR2 chr11:71929617 3'AG 71929617 Downstream 22bp
chr8 28876364 28876364 1 + G A UCEC 28876361 + 28876341 28876381 41 TCCCCCAGTCTCTGCCACATCTGGTACTTTCCGACTGCGAC TCCCCCAGTCTCTGCCACATCTGATACTTTCCGACTGCGAC < 41bp 0.726746373911866 0.488702737660797 0.37394196 0.37949964 prediction 0.453492747823733 Functional Loss - HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28876361 chr8:28876364 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_77175 0 0 1 0 2 HMBOX1 chr8:28876277 3'AG 28876277 Downstream 88bp
chr8 28876364 28876364 1 + G A UCEC 28876361 + 28876341 28876381 41 TCCCCCAGTCTCTGCCACATCTGGTACTTTCCGACTGCGAC TCCCCCAGTCTCTGCCACATCTGATACTTTCCGACTGCGAC < 41bp 0.726746373911866 0.488702737660797 0.37394196 0.37949964 prediction 0.453492747823733 Functional Loss - HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28876361 chr8:28876364 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_77175 0 0 1 0 2 HMBOX1 chr8:28876430 5'GT 28876430 Upstream 67bp
chr19 731160 731160 1 + C T LUSC 731158 + 731138 731178 41 CCAGCCACTGCCAAGGAGAACGCGGCGGCCCCGAGCCCAGT CCAGCCACTGCCAAGGAGAACGTGGCGGCCCCGAGCCCAGT < 41bp 0.774277107988624 0.547534463083175 0.8527545 0.4720908 prediction 0.453485289810897 Functional Loss - PALM ENSG00000099864 CDS Human protein_coding chr19:731158 chr19:731160 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_77178 0 0 1 0 2 PALM chr19:731095 3'AG 731095 Downstream 66bp
chr19 731160 731160 1 + C T LUSC 731158 + 731138 731178 41 CCAGCCACTGCCAAGGAGAACGCGGCGGCCCCGAGCCCAGT CCAGCCACTGCCAAGGAGAACGTGGCGGCCCCGAGCCCAGT < 41bp 0.774277107988624 0.547534463083175 0.8527545 0.4720908 prediction 0.453485289810897 Functional Loss - PALM ENSG00000099864 CDS Human protein_coding chr19:731158 chr19:731160 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_77178 0 0 1 0 2 PALM chr19:731245 5'GT 731245 Upstream 86bp
chr12 53509369 53509369 1 + G A UCEC 53509366 + 53509346 53509386 41 GCCCACGCCGTGGTGCTCTGCGCGCTGCCGGTCCACGTGGC GCCCACGCCGTGGTGCTCTGCGCACTGCCGGTCCACGTGGC < 41bp 0.795371144364196 0.568631858091263 0.21850753 0.18064728 prediction 0.453478572545865 Functional Loss - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53509366 chr12:53509369 synonymous SNV . 0 24 hm5C_associated_SNPs_77180 0 0 1 0 1 SOAT2 chr12:53509438 5'GT 53509438 Upstream 70bp
chr1 158224934 158224934 1 + G T LIHC 158224932 + 158224912 158224952 41 GCATCCTTTTACAACCATTCCTGGAAACAAAATCTGGTCTC GCATCCTTTTACAACCATTCCTTGAAACAAAATCTGGTCTC < 41bp 0.894216546750888 0.667477724232345 0.16694915 0.026741415 prediction 0.453477645037086 Functional Loss - CD1A ENSG00000158477 CDS Human protein_coding chr1:158224932 chr1:158224934 nonsynonymous SNV 0.005 2 23 hm5C_associated_SNPs_77181 0 0 0 0 1 CD1A chr1:158224874 3'AG 158224874 Downstream 61bp
chr2 98928738 98928738 1 + C T LGG 98928736 + 98928716 98928756 41 CATCATTGCCACACCTCCACCTCGAGCAGCCCTGCCCTGTA CATCATTGCCACACCTCCACCTTGAGCAGCCCTGCCCTGTA < 41bp 0.783046114684208 0.556308074483728 0.42511904 0.04507181 prediction 0.453476080400959 Functional Loss - VWA3B ENSG00000168658 CDS Human protein_coding chr2:98928736 chr2:98928738 stopgain 0.001 0 23 hm5C_associated_SNPs_77182 0 0 0 0 2 VWA3B chr2:98928663 3'AG 98928663 Downstream 76bp
chr2 98928738 98928738 1 + C T LGG 98928736 + 98928716 98928756 41 CATCATTGCCACACCTCCACCTCGAGCAGCCCTGCCCTGTA CATCATTGCCACACCTCCACCTTGAGCAGCCCTGCCCTGTA < 41bp 0.783046114684208 0.556308074483728 0.42511904 0.04507181 prediction 0.453476080400959 Functional Loss - VWA3B ENSG00000168658 CDS Human protein_coding chr2:98928736 chr2:98928738 stopgain 0.001 0 23 hm5C_associated_SNPs_77182 0 0 0 0 2 VWA3B chr2:98928667 3'AG 98928667 Downstream 72bp
chr13 29933428 29933428 1 + C T UCEC 29933426 + 29933406 29933446 41 AAAGCAGAGGACTGCGGCAGCTCGAAATGGGTTTCCGCCCA AAAGCAGAGGACTGCGGCAGCTTGAAATGGGTTTCCGCCCA < 41bp 0.836699750984249 0.609964425480747 0.3810586 0.2986639 prediction 0.453470651007003 Functional Loss - MTUS2 ENSG00000132938 CDS Human protein_coding chr13:29933426 chr13:29933428 stopgain 0.003 0 23 hm5C_associated_SNPs_77184 0 0 0 0 1 MTUS2 chr13:29933399 3'AG 29933399 Downstream 30bp
chr19 14706105 14706105 1 + T C MESO 14706104 + 14706084 14706124 41 AGCTGTGAATCTTGAGCCTTCTCCATTGCAGCCATCCCTGG AGCTGTGAATCTTGAGCCTTCCCCATTGCAGCCATCCCTGG < 41bp 0.805387374121068 0.578654544272603 0.9576825 0.107100815 prediction 0.453465659696931 Functional Loss - CLEC17A ENSG00000187912 CDS Human protein_coding chr19:14706104 chr19:14706105 synonymous SNV . 0 22 hm5C_associated_SNPs_77189 0 0 0 0 2 CLEC17A chr19:14706086 3'AG 14706086 Downstream 20bp
chr19 14706105 14706105 1 + T C MESO 14706104 + 14706084 14706124 41 AGCTGTGAATCTTGAGCCTTCTCCATTGCAGCCATCCCTGG AGCTGTGAATCTTGAGCCTTCCCCATTGCAGCCATCCCTGG < 41bp 0.805387374121068 0.578654544272603 0.9576825 0.107100815 prediction 0.453465659696931 Functional Loss - CLEC17A ENSG00000187912 CDS Human protein_coding chr19:14706104 chr19:14706105 synonymous SNV . 0 22 hm5C_associated_SNPs_77189 0 0 0 0 2 CLEC17A chr19:14706127 5'GT 14706127 Upstream 23bp
chr15 25451308 25451308 1 + A T LUSC 25451304 + 25451284 25451324 41 GGTCCCCAGCCCCCAGTGTGCTGAAGCTCAGGCCCTTCCCA GGTCCCCAGCCCCCAGTGTGCTGATGCTCAGGCCCTTCCCA < 41bp 0.814109112277289 0.587376410558419 0.43955356 0.609011 prediction 0.453465403437741 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25451304 chr15:25451308 . . 0 25 hm5C_associated_SNPs_77190 0 0 0 0 1 SNHG14 chr15:25451347 5'GT 25451347 Upstream 40bp
chr11 43469578 43469578 1 + G A ACC 43469575 + 43469555 43469595 41 AAAAACGTGACTACCAGCGTCTGGGATGGCCCAGCCCGGAC AAAAACGTGACTACCAGCGTCTGAGATGGCCCAGCCCGGAC < 41bp 0.761896295943822 0.53516369192772 0.31872547 0.16266999 prediction 0.453465208032206 Functional Loss - TTC17 ENSG00000052841 CDS Human protein_coding chr11:43469575 chr11:43469578 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_77193 0 0 1 0 2 TTC17 chr11:43469552 3'AG 43469552 Downstream 27bp
chr11 43469578 43469578 1 + G A ACC 43469575 + 43469555 43469595 41 AAAAACGTGACTACCAGCGTCTGGGATGGCCCAGCCCGGAC AAAAACGTGACTACCAGCGTCTGAGATGGCCCAGCCCGGAC < 41bp 0.761896295943822 0.53516369192772 0.31872547 0.16266999 prediction 0.453465208032206 Functional Loss - TTC17 ENSG00000052841 CDS Human protein_coding chr11:43469575 chr11:43469578 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_77193 0 0 1 0 2 TTC17 chr11:43469672 5'GT 43469672 Upstream 95bp
chr1 156106916 156106916 1 + G T UCEC 156106914 + 156106894 156106934 41 TCCTCTCCAGATCTGGGCTGCAGGAGCTGGGGCCACCCACA TCCTCTCCAGATCTGGGCTGCATGAGCTGGGGCCACCCACA < 41bp 0.726731494866192 0.375413859203343 0.9006136 0.29358596 prediction 0.453462989732385 Functional Loss - LMNA ENSG00000160789 CDS Human protein_coding chr1:156106914 chr1:156106916 stopgain 1.000 1 23 hm5C_associated_SNPs_77195 0 0 1 0 1 LMNA chr1:156106904 3'AG 156106904 Downstream 13bp
chr16 70211337 70211337 1 + C T COAD 70211335 + 70211315 70211355 41 GAGGGGCAGCGGTACAGCCACGCGGCAGGAGAGTGTGCTCG GAGGGGCAGCGGTACAGCCACGTGGCAGGAGAGTGTGCTCG < 41bp 0.800537806577452 0.573810354198033 0.26506245 0.39209354 prediction 0.453454904758838 Functional Loss - CLEC18C ENSG00000157335 CDS Human protein_coding chr16:70211335 chr16:70211337 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_77198 0 0 0 0 1 CLEC18C chr16:70211383 5'GT 70211383 Upstream 47bp
chr22 37271708 37271708 1 + G C LIHC 37271704 + 37271684 37271724 41 TTCCTCTGCAGGGCACTGTCCGGGGAGCCACGGGCATCTTC TTCCTCTGCAGGGCACTGTCCGGGCAGCCACGGGCATCTTC < 41bp 0.863493798660246 0.636767621086762 0.9433775 0.9182143 prediction 0.453452355146968 Functional Loss - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37271704 chr22:37271708 nonsynonymous SNV 0.983 1 25 hm5C_associated_SNPs_77199 0 0 0 0 1 NCF4 chr22:37271695 3'AG 37271695 Downstream 14bp
chr1 247582299 247582299 1 + G A LUAD 247582296 + 247582276 247582316 41 CTTCAATGGGGAGGAGAAGGCGTGGGCCATGGCCGTGTGGA CTTCAATGGGGAGGAGAAGGCGTAGGCCATGGCCGTGTGGA < 41bp 0.726721378445558 0.479723647773701 0.85194296 0.647391 prediction 0.453442756891115 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247582296 chr1:247582299 stopgain 0.998 1 24 hm5C_associated_SNPs_77200 0 0 0 0 1 NLRP3 chr1:247582379 5'GT 247582379 Upstream 81bp
chr1 156040024 156040024 1 + G T LUAD 156040021 + 156040001 156040041 41 GCCATCACTCTGGGCAGTGCCCAGGCTGGACAGGAGCCTGG GCCATCACTCTGGGCAGTGCCCATGCTGGACAGGAGCCTGG < 41bp 0.726720086799732 0.325893291606467 0.28475586 0.24008659 prediction 0.453440173599464 Functional Loss - RAB25 ENSG00000132698 CDS Human protein_coding chr1:156040021 chr1:156040024 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_77201 0 0 0 0 1 RAB25 chr1:156039951 3'AG 156039951 Downstream 74bp
chr6 43139817 43139817 1 + G T UCEC 43139815 + 43139795 43139835 41 CCAAGCCGGGTAAGAAGACCCGGGGCCGCGTGAAGATCAAG CCAAGCCGGGTAAGAAGACCCGTGGCCGCGTGAAGATCAAG < 41bp 0.726718600070768 0.370069256784174 0.8175905 0.21407646 prediction 0.453437200141536 Functional Loss - SRF ENSG00000112658 CDS Human protein_coding chr6:43139815 chr6:43139817 synonymous SNV . 0 23 hm5C_associated_SNPs_77202 0 0 1 0 1 SRF chr6:43139907 5'GT 43139907 Upstream 91bp
chr4 186260653 186260653 1 + A C STAD 186260652 + 186260632 186260672 41 GGCATGTGGAAAGCCTCCATCACCAGTGGAGAGGTAGTTTT GGCATGTGGAAAGCCTCCATCCCCAGTGGAGAGGTAGTTTT < 41bp 0.795451594640118 0.568733527497775 0.5448116 0.4044635 prediction 0.453436134284687 Functional Loss - SNX25 ENSG00000109762 CDS Human protein_coding chr4:186260652 chr4:186260653 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_77204 0 0 1 0 1 SNX25 chr4:186260664 5'GT 186260664 Upstream 12bp
chr16 69832624 69832624 1 + G A UCEC 69832621 + 69832601 69832641 41 CAAGGTGCATAATCGTCAACCTCGAATTAACTCCTACGTGG CAAGGTGCATAATCGTCAACCTCAAATTAACTCCTACGTGG < 41bp 0.757746157238782 0.531031186827265 0.19175234 0.27598083 prediction 0.453429940823035 Functional Loss - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69832621 chr16:69832624 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_77205 0 0 1 0 1 WWP2 chr16:69832585 3'AG 69832585 Downstream 40bp
chr17 30349745 30349745 1 + G T SARC 30349743 + 30349723 30349763 41 ATATGTGAGCTCTGCACCTGCGGAGATGAGACTCTGTCATG ATATGTGAGCTCTGCACCTGCGTAGATGAGACTCTGTCATG < 41bp 0.726712625090555 0.37884853095236 0.56902957 0.19779098 prediction 0.45342525018111 Functional Loss - LRRC37B ENSG00000185158 CDS Human protein_coding chr17:30349743 chr17:30349745 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_77207 0 0 0 0 1 LRRC37B chr17:30349844 5'GT 30349844 Upstream 100bp
chr12 53448150 53448150 1 - C G LIHC 53448151 - 53448131 53448171 41 GCCCCGGTGCCGCTGTTCATCGGGCCGCGCGGGGAAGGCGG GCCCCGGTGCCGCTGTTCATCCGGCCGCGCGGGGAAGGCGG < 41bp 0.870880853714094 0.644168628541612 0.89235246 0.44365302 prediction 0.453424450344963 Functional Loss - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53448151 chr12:53448150 synonymous SNV . 0 22 hm5C_associated_SNPs_77208 0 0 1 0 1 TNS2 chr12:53448105 5'GT 53448105 Upstream 46bp
chr4 48486970 48486970 1 + C T SKCM 48486967 + 48486947 48486987 41 AGCATCATCATGACCATCTCCTCCACGCTTCTGGCCCTCGT AGCATCATCATGACCATCTCCTCTACGCTTCTGGCCCTCGT < 41bp 0.758074016124305 0.531362325172461 0.92155373 0.42530835 prediction 0.45342338190369 Functional Loss - SLC10A4 ENSG00000145248 CDS Human protein_coding chr4:48486967 chr4:48486970 synonymous SNV . 0 24 hm5C_associated_SNPs_77209 0 0 0 0 1 SLC10A4 chr4:48486949 3'AG 48486949 Downstream 22bp
chr1 28056766 28056766 1 + C T rs1933886 28056764 + 28056744 28056784 41 CTAGAGTGCAATGGCACGATCTCGGCTCACTGCAACCTCCA CTAGAGTGCAATGGCACGATCTTGGCTCACTGCAACCTCCA < 41bp 0.802735067584886 0.576023638047197 0.5007566 0.18861884 prediction 0.453422859075379 Functional Loss - FAM76A ENSG00000009780 CDS Human protein_coding chr1:28056764 chr1:28056766 nonsynonymous SNV 0.016 0 23 hm5C_associated_SNPs_77211 0 0 0 0 2 FAM76A chr1:28056743 3'AG 28056743 Downstream 24bp
chr1 28056766 28056766 1 + C T rs1933886 28056764 + 28056744 28056784 41 CTAGAGTGCAATGGCACGATCTCGGCTCACTGCAACCTCCA CTAGAGTGCAATGGCACGATCTTGGCTCACTGCAACCTCCA < 41bp 0.802735067584886 0.576023638047197 0.5007566 0.18861884 prediction 0.453422859075379 Functional Loss - FAM76A ENSG00000009780 CDS Human protein_coding chr1:28056764 chr1:28056766 nonsynonymous SNV 0.016 0 23 hm5C_associated_SNPs_77211 0 0 0 0 2 FAM76A chr1:28056844 5'GT 28056844 Upstream 79bp
chr20 31196201 31196201 1 + G A rs114916629 31196198 + 31196178 31196218 41 CTCCTCACAGCACTGTGCTTCCCGGGGCCCACTTGTACAGG CTCCTCACAGCACTGTGCTTCCCAGGGCCCACTTGTACAGG < 41bp 0.789516739796558 0.562807221115004 0.26187536 0.073773205 prediction 0.453419037363106 Functional Loss - LOC149950 ENSG00000204393 CDS Human lincRNA chr20:31196198 chr20:31196201 synonymous SNV . 0 24 hm5C_associated_SNPs_77212 0 0 0 0 1 LOC149950 chr20:31196112 3'AG 31196112 Downstream 90bp
chr11 64085809 64085809 1 + G T SARC 64085806 + 64085786 64085826 41 CAGTGAAGGAGAGTGGGCGTCTGGCGGGGTCCGCAGTTTCA CAGTGAAGGAGAGTGGGCGTCTGTCGGGGTCCGCAGTTTCA < 41bp 0.726709302314541 0.340468538454825 0.6241079 0.20942864 prediction 0.453418604629083 Functional Loss - PRDX5 ENSG00000126432 CDS Human protein_coding chr11:64085806 chr11:64085809 nonsynonymous SNV 0.191 1 24 hm5C_associated_SNPs_77213 0 0 1 0 1 PRDX5 chr11:64085858 5'GT 64085858 Upstream 50bp
chr19 41828534 41828534 1 + G A PRAD 41828531 + 41828511 41828551 41 ACAACCCCGACTTCGACAACCTCGACATCGTGGCACGGGAT ACAACCCCGACTTCGACAACCTCAACATCGTGGCACGGGAT < 41bp 0.726708602574435 0.497610488034351 0.27482447 0.14031693 prediction 0.453417205148869 Functional Loss - CCDC97 ENSG00000142039 CDS Human protein_coding chr19:41828531 chr19:41828534 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_77214 0 0 1 0 1 CCDC97 chr19:41828500 3'AG 41828500 Downstream 35bp
chr17 61556461 61556461 1 + G T UCEC 61556459 + 61556439 61556479 41 CACCTGCTGGTCCCTGGACCCAGGTACGGCCCTTGCAGCTC CACCTGCTGGTCCCTGGACCCATGTACGGCCCTTGCAGCTC < 41bp 0.726707926272699 0.382027782753579 0.91958594 0.20315689 prediction 0.453415852545398 Functional Loss - ACE ENSG00000159640 CDS Human protein_coding chr17:61556459 chr17:61556461 nonsynonymous SNV 0.976 2 23 hm5C_associated_SNPs_77215 0 0 0 0 2 ACE chr17:61556368 3'AG 61556368 Downstream 94bp
chr17 61556461 61556461 1 + G T UCEC 61556459 + 61556439 61556479 41 CACCTGCTGGTCCCTGGACCCAGGTACGGCCCTTGCAGCTC CACCTGCTGGTCCCTGGACCCATGTACGGCCCTTGCAGCTC < 41bp 0.726707926272699 0.382027782753579 0.91958594 0.20315689 prediction 0.453415852545398 Functional Loss - ACE ENSG00000159640 CDS Human protein_coding chr17:61556459 chr17:61556461 nonsynonymous SNV 0.976 2 23 hm5C_associated_SNPs_77215 0 0 0 0 2 ACE chr17:61556461 5'GT 61556461 Upstream 1bp
chr3 35770855 35770855 1 + T C COAD 35770854 + 35770834 35770874 41 TGTCCCGCACCCATCCACCTCTCCAGAGCACACCCCTAGTC TGTCCCGCACCCATCCACCTCCCCAGAGCACACCCCTAGTC < 41bp 0.786568393858004 0.559861227891681 0.95880866 0.4690234 prediction 0.453414331932646 Functional Loss - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35770854 chr3:35770855 nonsynonymous SNV 0.822 3 22 hm5C_associated_SNPs_77216 0 0 0 0 1 ARPP21 chr3:35770795 3'AG 35770795 Downstream 61bp
chrX 153770592 153770592 1 + G A OV 153770589 + 153770569 153770609 41 GTGAAGCTCTCCAGCATCATCGAGGTCCCATCAGGTGGGGA GTGAAGCTCTCCAGCATCATCGAAGTCCCATCAGGTGGGGA < 41bp 0.726706932024562 0.481505441363748 0.91279614 0.7974607 prediction 0.453413864049124 Functional Loss - IKBKG ENSG00000073009 CDS Human other chrX:153770589 chrX:153770592 synonymous SNV . 0 24 hm5C_associated_SNPs_77218 0 0 0 0 1 IKBKG chrX:153770667 5'GT 153770667 Upstream 76bp
chr11 35250773 35250773 1 + G T LUSC 35250770 + 35250750 35250790 41 ACGGAGAGGCCAGCAAGTCTCAGGAAATGGTGCATTTGGTG ACGGAGAGGCCAGCAAGTCTCAGTAAATGGTGCATTTGGTG < 41bp 0.903972712616468 0.677279662867881 0.9136594 0.2661595 prediction 0.453386099497173 Functional Loss - CD44 ENSG00000026508 CDS Human protein_coding chr11:35250770 chr11:35250773 stopgain 0.999 3 24 hm5C_associated_SNPs_77223 0 0 0 0 1 CD44 chr11:35250676 3'AG 35250676 Downstream 98bp
chr16 28946799 28946799 1 + G A SKCM 28946796 + 28946776 28946816 41 TGGCTGCTGAGGACTGGTGGCTGGAAGGTCTCAGCTGTGAC TGGCTGCTGAGGACTGGTGGCTGAAAGGTCTCAGCTGTGAC < 41bp 0.780543043106592 0.553857129324484 0.25110644 0.16658357 prediction 0.453371827564215 Functional Loss - CD19 ENSG00000177455 CDS Human protein_coding chr16:28946796 chr16:28946799 stopgain 0.953 1 24 hm5C_associated_SNPs_77228 0 0 0 0 2 CD19 chr16:28946765 3'AG 28946765 Downstream 35bp
chr16 28946799 28946799 1 + G A SKCM 28946796 + 28946776 28946816 41 TGGCTGCTGAGGACTGGTGGCTGGAAGGTCTCAGCTGTGAC TGGCTGCTGAGGACTGGTGGCTGAAAGGTCTCAGCTGTGAC < 41bp 0.780543043106592 0.553857129324484 0.25110644 0.16658357 prediction 0.453371827564215 Functional Loss - CD19 ENSG00000177455 CDS Human protein_coding chr16:28946796 chr16:28946799 stopgain 0.953 1 24 hm5C_associated_SNPs_77228 0 0 0 0 2 CD19 chr16:28946875 5'GT 28946875 Upstream 77bp
chr10 101716946 101716946 1 - G A UCEC 101716948 - 101716928 101716968 41 CTTTAGGTGACCTGGTGATTCTCGATGGCATTCCCACTGCA CTTTAGGTGACCTGGTGATTCTTGATGGCATTCCCACTGCA < 41bp 0.848665494470936 0.621981717340415 0.7928971 0.32629448 prediction 0.453367554261041 Functional Loss - DNMBP ENSG00000107554 CDS Human protein_coding chr10:101716948 chr10:101716946 synonymous SNV . 0 23 hm5C_associated_SNPs_77230 0 0 0 0 1 DNMBP chr10:101716962 3'AG 101716962 Downstream 17bp
chr1 117568512 117568512 1 + C T THCA 117568510 + 117568490 117568530 41 GAGTCACAGCGGATGGTGCTCACGGTGCTGCCTTCAGGTAA GAGTCACAGCGGATGGTGCTCATGGTGCTGCCTTCAGGTAA < 41bp 0.809683915295448 0.583000798998713 0.6940109 0.82652587 prediction 0.45336623259347 Functional Loss - CD101 ENSG00000134256 CDS Human protein_coding chr1:117568510 chr1:117568512 nonsynonymous SNV 0.206 0 23 hm5C_associated_SNPs_77231 0 0 0 0 1 CD101 chr1:117568526 5'GT 117568526 Upstream 15bp
chr10 22675808 22675808 1 + G A BLCA 22675805 + 22675785 22675825 41 GTGATATTGCAAAGCATTCTCCAGAGTTAGCACAGACAGTA GTGATATTGCAAAGCATTCTCCAAAGTTAGCACAGACAGTA < 41bp 0.761928313728717 0.535245215675335 0.48844647 0.15370247 prediction 0.453366196106764 Functional Loss - SPAG6 ENSG00000077327 CDS Human protein_coding chr10:22675805 chr10:22675808 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_77232 0 0 0 0 1 SPAG6 chr10:22675888 5'GT 22675888 Upstream 81bp
chr1 9649091 9649091 1 + A C rs562921900 9649087 + 9649067 9649107 41 GCGGCCGGCGTGTTGCTCTACCGGATCGCGCGGAGGTGAGT GCGGCCGGCGTGTTGCTCTACCGGCTCGCGCGGAGGTGAGT < 41bp 0.726681638845301 0.354604431433545 0.13087496 0.08316013 prediction 0.453363277690602 Functional Loss - TMEM201 ENSG00000188807 CDS Human protein_coding chr1:9649087 chr1:9649091 nonsynonymous SNV 0.979 0 25 hm5C_associated_SNPs_77234 0 0 1 0 1 TMEM201 chr1:9649101 5'GT 9649101 Upstream 11bp
chr1 155300265 155300265 1 + T C STAD 155300264 + 155300244 155300284 41 GCTTCCGGCGTGGGGAAGTGCTGCGTGTCATCACCACAGTG GCTTCCGGCGTGGGGAAGTGCCGCGTGTCATCACCACAGTG < 41bp 0.73024174647578 0.503567083509974 0.33745918 0.51924765 prediction 0.453349325931611 Functional Loss - RUSC1 ENSG00000160753 CDS Human protein_coding chr1:155300264 chr1:155300265 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_77236 0 0 1 0 1 RUSC1 chr1:155300194 3'AG 155300194 Downstream 72bp
chr5 35857138 35857138 1 + G T LIHC 35857135 + 35857115 35857155 41 TTCTTTACTTCAAGTCGTTTCTGGAGAAAGTGGCTATGCTC TTCTTTACTTCAAGTCGTTTCTGTAGAAAGTGGCTATGCTC < 41bp 0.726671912875247 0.360626794092672 0.5815103 0.20557863 prediction 0.453343825750494 Functional Loss - IL7R ENSG00000168685 CDS Human protein_coding chr5:35857135 chr5:35857138 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_77239 0 0 0 0 1 IL7R chr5:35857161 5'GT 35857161 Upstream 24bp
chr5 35857137 35857137 1 + G T LUAD 35857135 + 35857115 35857155 41 TTCTTTACTTCAAGTCGTTTCTGGAGAAAGTGGCTATGCTC TTCTTTACTTCAAGTCGTTTCTTGAGAAAGTGGCTATGCTC < 41bp 0.726671912875247 0.402415302084695 0.5815103 0.19894493 prediction 0.453343825750494 Functional Loss - IL7R ENSG00000168685 CDS Human protein_coding chr5:35857135 chr5:35857137 stopgain 1.000 0 23 hm5C_associated_SNPs_77240 0 0 0 0 1 IL7R chr5:35857161 5'GT 35857161 Upstream 25bp
chr1 154408561 154408561 1 + G A STAD 154408558 + 154408538 154408578 41 GGCGAGTGGAGCGAGTGGAGCCCGGAGGCCATGGGCACGCC GGCGAGTGGAGCGAGTGGAGCCCAGAGGCCATGGGCACGCC < 41bp 0.726670012351083 0.470275481584211 0.8723469 0.62442726 prediction 0.453340024702166 Functional Loss - IL6R ENSG00000160712 CDS Human protein_coding chr1:154408558 chr1:154408561 synonymous SNV . 0 24 hm5C_associated_SNPs_77241 0 0 1 0 1 IL6R chr1:154408586 5'GT 154408586 Upstream 26bp
chr16 25239809 25239809 1 + G A rs111840156 25239806 + 25239786 25239826 41 GACCCGCCTCATCCTGAAGGCTCGGTGAAGCAGAGCTCGTG GACCCGCCTCATCCTGAAGGCTCAGTGAAGCAGAGCTCGTG < 41bp 0.740651122491786 0.513981368622927 0.30993256 0.19733113 prediction 0.453339507737717 Functional Loss - AQP8 ENSG00000103375 CDS Human protein_coding chr16:25239806 chr16:25239809 nonsynonymous SNV 0.009 1 24 hm5C_associated_SNPs_77242 0 0 0 0 1 AQP8 chr16:25239765 3'AG 25239765 Downstream 45bp
chr1 67155933 67155933 1 + C T ACC 67155931 + 67155911 67155951 41 TCCTCCAATAGCACCCTTAGCGCGGGCTGAAAGCACTTCTT TCCTCCAATAGCACCCTTAGCGTGGGCTGAAAGCACTTCTT < 41bp 0.830290078162505 0.603621125375961 0.83318186 0.86998916 prediction 0.453337905573088 Functional Loss - SGIP1 ENSG00000118473 CDS Human protein_coding chr1:67155931 chr1:67155933 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_77243 0 0 0 0 2 SGIP1 chr1:67155873 3'AG 67155873 Downstream 61bp
chr1 67155933 67155933 1 + C T ACC 67155931 + 67155911 67155951 41 TCCTCCAATAGCACCCTTAGCGCGGGCTGAAAGCACTTCTT TCCTCCAATAGCACCCTTAGCGTGGGCTGAAAGCACTTCTT < 41bp 0.830290078162505 0.603621125375961 0.83318186 0.86998916 prediction 0.453337905573088 Functional Loss - SGIP1 ENSG00000118473 CDS Human protein_coding chr1:67155931 chr1:67155933 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_77243 0 0 0 0 2 SGIP1 chr1:67155999 5'GT 67155999 Upstream 67bp
chr18 21484627 21484627 1 + G T STAD 21484625 + 21484605 21484645 41 GCGGCCGAGGACGCAGCCAACAGGGCTGCCAGTGCATCTGA GCGGCCGAGGACGCAGCCAACATGGCTGCCAGTGCATCTGA < 41bp 0.726668426434025 0.400561178728198 0.9333738 0.3493339 prediction 0.453336852868049 Functional Loss - LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21484625 chr18:21484627 nonsynonymous SNV 0.294 1 23 hm5C_associated_SNPs_77244 0 0 0 0 1 LAMA3 chr18:21484658 5'GT 21484658 Upstream 32bp
chrX 115572265 115572265 1 + G A SKCM 115572262 + 115572242 115572282 41 GGAGGATTCTTCCATTGTTTCAAGGTTGGTATTAAAGCGTT GGAGGATTCTTCCATTGTTTCAAAGTTGGTATTAAAGCGTT < 41bp 0.726667371211926 0.494754069063595 0.88798463 0.81026125 prediction 0.453334742423852 Functional Loss - SLC6A14 ENSG00000087916 CDS Human other chrX:115572262 chrX:115572265 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_77246 0 0 1 0 1 SLC6A14 chrX:115572265 5'GT 115572265 Upstream 1bp
chrX 14708939 14708939 1 + G A HNSC 14708936 + 14708916 14708956 41 AACTTCGTCTCCAGGCAACACAAGGAGTTCCTGCGCCTCCG AACTTCGTCTCCAGGCAACACAAAGAGTTCCTGCGCCTCCG < 41bp 0.775119593436016 0.548455038441686 0.90574026 0.6529063 prediction 0.453329109988661 Functional Loss - GLRA2 ENSG00000101958 CDS Human protein_coding chrX:14708936 chrX:14708939 synonymous SNV . 0 24 hm5C_associated_SNPs_77249 0 0 0 0 1 GLRA2 chrX:14708981 5'GT 14708981 Upstream 43bp
chr19 11022887 11022887 1 + G T SKCM 11022885 + 11022865 11022905 41 TCTTGATGTTGGCTGTGGCTCTGGGATCCTGTCGTTTTTTG TCTTGATGTTGGCTGTGGCTCTTGGATCCTGTCGTTTTTTG < 41bp 0.900055721799784 0.67339419548827 0.43735686 0.07504046 prediction 0.453323052623028 Functional Loss - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11022885 chr19:11022887 nonsynonymous SNV 0.984 5 23 hm5C_associated_SNPs_77250 0 0 1 0 1 CARM1 chr19:11022970 5'GT 11022970 Upstream 84bp
chr14 93401241 93401241 1 + G A rs202023927 93401238 + 93401218 93401258 41 CGGCGGGGCTGAGACACCGGCTGGCAGGGCTGGCCCCAGGG CGGCGGGGCTGAGACACCGGCTGACAGGGCTGGCCCCAGGG < 41bp 0.798211416854586 0.571554260478186 0.38830847 0.17522937 prediction 0.453314312752799 Functional Loss - CHGA ENSG00000100604 UTR3 Human protein_coding chr14:93401238 chr14:93401241 . . 0 24 hm5C_associated_SNPs_77252 0 0 0 0 1 CHGA chr14:93401146 3'AG 93401146 Downstream 96bp
chr16 69971046 69971046 1 + C T UCEC 69971044 + 69971024 69971064 41 GCTGACTGACTGGCGTTTCACCCGAGGCGTGGAAGAGCAGA GCTGACTGACTGGCGTTTCACCTGAGGCGTGGAAGAGCAGA < 41bp 0.726653703267025 0.431288584281762 0.22569579 0.28303385 prediction 0.45330740653405 Functional Loss - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69971044 chr16:69971046 stopgain 1.000 1 23 hm5C_associated_SNPs_77254 0 0 0 0 2 WWP2 chr16:69971021 3'AG 69971021 Downstream 26bp
chr16 69971046 69971046 1 + C T UCEC 69971044 + 69971024 69971064 41 GCTGACTGACTGGCGTTTCACCCGAGGCGTGGAAGAGCAGA GCTGACTGACTGGCGTTTCACCTGAGGCGTGGAAGAGCAGA < 41bp 0.726653703267025 0.431288584281762 0.22569579 0.28303385 prediction 0.45330740653405 Functional Loss - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69971044 chr16:69971046 stopgain 1.000 1 23 hm5C_associated_SNPs_77254 0 0 0 0 2 WWP2 chr16:69971141 5'GT 69971141 Upstream 96bp
chr19 52938364 52938364 1 + C T rs188321362 52938362 + 52938342 52938382 41 CTTCCTGACCTGAGTGTTACCTCCATGTTGGAGCAAAAGAG CTTCCTGACCTGAGTGTTACCTTCATGTTGGAGCAAAAGAG < 41bp 0.726653669630716 0.431386159877385 0.9520238 0.35667163 prediction 0.453307339261433 Functional Loss - ZNF534 ENSG00000198633 CDS Human protein_coding chr19:52938362 chr19:52938364 nonsynonymous SNV 0.028 2 23 hm5C_associated_SNPs_77255 0 0 0 0 2 ZNF534 chr19:52938334 3'AG 52938334 Downstream 31bp
chr19 52938364 52938364 1 + C T rs188321362 52938362 + 52938342 52938382 41 CTTCCTGACCTGAGTGTTACCTCCATGTTGGAGCAAAAGAG CTTCCTGACCTGAGTGTTACCTTCATGTTGGAGCAAAAGAG < 41bp 0.726653669630716 0.431386159877385 0.9520238 0.35667163 prediction 0.453307339261433 Functional Loss - ZNF534 ENSG00000198633 CDS Human protein_coding chr19:52938362 chr19:52938364 nonsynonymous SNV 0.028 2 23 hm5C_associated_SNPs_77255 0 0 0 0 2 ZNF534 chr19:52938462 5'GT 52938462 Upstream 99bp
chr10 6255657 6255657 1 + T C OV 6255656 + 6255636 6255676 41 CTCCCCGCCCGGGGCAAGACCTACATCTCCAAGAAGCTGAC CTCCCCGCCCGGGGCAAGACCCACATCTCCAAGAAGCTGAC < 41bp 0.726651601235329 0.457027855692401 0.5725708 0.08255464 prediction 0.453303202470658 Functional Loss - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6255656 chr10:6255657 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_77256 0 0 1 0 2 PFKFB3 chr10:6255586 3'AG 6255586 Downstream 72bp
chr10 6255657 6255657 1 + T C OV 6255656 + 6255636 6255676 41 CTCCCCGCCCGGGGCAAGACCTACATCTCCAAGAAGCTGAC CTCCCCGCCCGGGGCAAGACCCACATCTCCAAGAAGCTGAC < 41bp 0.726651601235329 0.457027855692401 0.5725708 0.08255464 prediction 0.453303202470658 Functional Loss - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6255656 chr10:6255657 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_77256 0 0 1 0 2 PFKFB3 chr10:6255711 5'GT 6255711 Upstream 55bp
chr20 18516317 18516317 1 + G A UCEC 18516314 + 18516294 18516334 41 CAGGAGCTTGGTGTTGGTGGCACGAGTCAGTGGAAAATCTG CAGGAGCTTGGTGTTGGTGGCACAAGTCAGTGGAAAATCTG < 41bp 0.759925568896819 0.533276666629265 0.2982964 0.23348865 prediction 0.453297804535109 Functional Loss - SEC23B ENSG00000101310 CDS Human protein_coding chr20:18516314 chr20:18516317 synonymous SNV . 0 24 hm5C_associated_SNPs_77259 1 0 1 0 2 SEC23B chr20:18516297 3'AG 18516297 Downstream 21bp
chr20 18516317 18516317 1 + G A UCEC 18516314 + 18516294 18516334 41 CAGGAGCTTGGTGTTGGTGGCACGAGTCAGTGGAAAATCTG CAGGAGCTTGGTGTTGGTGGCACAAGTCAGTGGAAAATCTG < 41bp 0.759925568896819 0.533276666629265 0.2982964 0.23348865 prediction 0.453297804535109 Functional Loss - SEC23B ENSG00000101310 CDS Human protein_coding chr20:18516314 chr20:18516317 synonymous SNV . 0 24 hm5C_associated_SNPs_77259 1 0 1 0 2 SEC23B chr20:18516386 5'GT 18516386 Upstream 70bp
chr1 181018351 181018351 1 + G A GBM 181018348 + 181018328 181018368 41 CCATGGATGGCAGAGAACCTCGCGCCTGATCACTGGGAGAG CCATGGATGGCAGAGAACCTCGCACCTGATCACTGGGAGAG < 41bp 0.7951383286433 0.568492264931212 0.5359862 0.35101902 prediction 0.453292127424176 Functional Loss - MR1 ENSG00000153029 CDS Human protein_coding chr1:181018348 chr1:181018351 synonymous SNV . 0 24 hm5C_associated_SNPs_77261 0 0 1 0 1 MR1 chr1:181018448 5'GT 181018448 Upstream 98bp
chr1 16332450 16332450 1 + C T UCEC 16332448 + 16332428 16332468 41 GGCCATCAGAAGACCGTCCCCACGGCTCACCTGACTTTTGT GGCCATCAGAAGACCGTCCCCATGGCTCACCTGACTTTTGT < 41bp 0.795494017750635 0.568850574619611 0.14465958 0.12728894 prediction 0.453286886262047 Functional Loss - C1orf64 ENSG00000183888 CDS Human protein_coding chr1:16332448 chr1:16332450 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_77262 0 0 0 0 1 C1orf64 chr1:16332414 3'AG 16332414 Downstream 37bp
chr1 173446551 173446551 1 + G T SARC 173446549 + 173446529 173446569 41 CCGTCGCCATGCCCGGAGGTCTGCTTCTCGGGGACGTGGCT CCGTCGCCATGCCCGGAGGTCTTCTTCTCGGGGACGTGGCT < 41bp 0.726634852596718 0.376263391561095 0.30982336 0.15288603 prediction 0.453269705193437 Functional Loss - PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173446549 chr1:173446551 synonymous SNV . 0 23 hm5C_associated_SNPs_77265 0 0 1 0 1 PRDX6 chr1:173446631 5'GT 173446631 Upstream 81bp
chr7 100609824 100609824 1 + A T KIRP 100609820 + 100609800 100609840 41 CCTAGGTCCTGGGACCAGGACAGGAAATGGTTCGAGACCTG CCTAGGTCCTGGGACCAGGACAGGTAATGGTTCGAGACCTG < 41bp 0.867197364127669 0.640562654373246 0.8245336 0.8793477 prediction 0.453269419508846 Functional Loss - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100609820 chr7:100609824 stopgain . 0 25 hm5C_associated_SNPs_77266 0 0 0 0 2 MUC3A chr7:100609805 3'AG 100609805 Downstream 20bp
chr7 100609824 100609824 1 + A T KIRP 100609820 + 100609800 100609840 41 CCTAGGTCCTGGGACCAGGACAGGAAATGGTTCGAGACCTG CCTAGGTCCTGGGACCAGGACAGGTAATGGTTCGAGACCTG < 41bp 0.867197364127669 0.640562654373246 0.8245336 0.8793477 prediction 0.453269419508846 Functional Loss - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100609820 chr7:100609824 stopgain . 0 25 hm5C_associated_SNPs_77266 0 0 0 0 2 MUC3A chr7:100609896 5'GT 100609896 Upstream 73bp
chr2 27279587 27279587 1 + G A BLCA 27279584 + 27279564 27279604 41 CAGAGAAGAATATGTATGCCCGAGACCGTAGAGATGGCCAG CAGAGAAGAATATGTATGCCCGAAACCGTAGAGATGGCCAG < 41bp 0.758143167534535 0.531509158397707 0.14532664 0.12031153 prediction 0.453268018273657 Functional Loss - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27279584 chr2:27279587 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_77267 0 0 1 2 2 AGBL5 chr2:27279491 3'AG 27279491 Downstream 97bp
chr2 27279587 27279587 1 + G A BLCA 27279584 + 27279564 27279604 41 CAGAGAAGAATATGTATGCCCGAGACCGTAGAGATGGCCAG CAGAGAAGAATATGTATGCCCGAAACCGTAGAGATGGCCAG < 41bp 0.758143167534535 0.531509158397707 0.14532664 0.12031153 prediction 0.453268018273657 Functional Loss - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27279584 chr2:27279587 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_77267 0 0 1 2 2 AGBL5 chr2:27279660 5'GT 27279660 Upstream 74bp
chr19 53950534 53950534 1 + C T SKCM 53950532 + 53950512 53950552 41 GGAGTCAGGGATGGCTTTTTCTCAGGTGAGATGATATTTTC GGAGTCAGGGATGGCTTTTTCTTAGGTGAGATGATATTTTC < 41bp 0.812228051339267 0.585599624065238 0.23177081 0.24697793 prediction 0.453256854548058 Functional Loss - ZNF761;ZNF765-ZNF761 ENSG00000160336 ncRNA_exonic Human protein_coding chr19:53950532 chr19:53950534 . 0.013 0 23 hm5C_associated_SNPs_77269 0 0 1 3 2 ZNF761;ZNF765-ZNF761 chr19:53950449 3'AG 53950449 Downstream 86bp
chr19 53950534 53950534 1 + C T SKCM 53950532 + 53950512 53950552 41 GGAGTCAGGGATGGCTTTTTCTCAGGTGAGATGATATTTTC GGAGTCAGGGATGGCTTTTTCTTAGGTGAGATGATATTTTC < 41bp 0.812228051339267 0.585599624065238 0.23177081 0.24697793 prediction 0.453256854548058 Functional Loss - ZNF761;ZNF765-ZNF761 ENSG00000160336 ncRNA_exonic Human protein_coding chr19:53950532 chr19:53950534 . 0.013 0 23 hm5C_associated_SNPs_77269 0 0 1 3 2 ZNF761;ZNF765-ZNF761 chr19:53950536 5'GT 53950536 Upstream 3bp
chr7 141423004 141423004 1 + G A SKCM 141423001 + 141422981 141423021 41 CATTTTGAAGAGCCAAAACTCAAGGACATCCTTCTACAGAT CATTTTGAAGAGCCAAAACTCAAAGACATCCTTCTACAGAT < 41bp 0.749612827710713 0.522991481177214 0.7811934 0.37434152 prediction 0.453242693066998 Functional Loss - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141423001 chr7:141423004 synonymous SNV . 0 24 hm5C_associated_SNPs_77272 0 0 0 0 2 WEE2 chr7:141422934 3'AG 141422934 Downstream 71bp
chr7 141423004 141423004 1 + G A SKCM 141423001 + 141422981 141423021 41 CATTTTGAAGAGCCAAAACTCAAGGACATCCTTCTACAGAT CATTTTGAAGAGCCAAAACTCAAAGACATCCTTCTACAGAT < 41bp 0.749612827710713 0.522991481177214 0.7811934 0.37434152 prediction 0.453242693066998 Functional Loss - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141423001 chr7:141423004 synonymous SNV . 0 24 hm5C_associated_SNPs_77272 0 0 0 0 2 WEE2 chr7:141423080 5'GT 141423080 Upstream 77bp
chr5 174919150 174919150 1 + G T LUSC 174919147 + 174919127 174919167 41 AAACATTAACATCAAGGAACCTCGATGGGATCAAAGCACTT AAACATTAACATCAAGGAACCTCTATGGGATCAAAGCACTT < 41bp 0.726618983480464 0.390747633240799 0.33502012 0.91840106 prediction 0.453237966960929 Functional Loss - SFXN1 ENSG00000164466 CDS Human protein_coding chr5:174919147 chr5:174919150 nonsynonymous SNV 0.750 1 24 hm5C_associated_SNPs_77273 0 0 1 0 1 SFXN1 chr5:174919098 3'AG 174919098 Downstream 53bp
chr12 64824009 64824009 1 + G A COAD 64824006 + 64823986 64824026 41 TAGAAAAGTTGATGCTGGCACAAGATGAAGAAAGGCAAGCC TAGAAAAGTTGATGCTGGCACAAAATGAAGAAAGGCAAGCC < 41bp 0.731764839762171 0.505149058893441 0.52160317 0.4668388 prediction 0.453231561737461 Functional Loss - XPOT ENSG00000184575 CDS Human protein_coding chr12:64824006 chr12:64824009 nonsynonymous SNV 0.985 1 24 hm5C_associated_SNPs_77276 0 0 1 0 1 XPOT chr12:64824067 5'GT 64824067 Upstream 59bp
chr11 126162425 126162425 1 + G A STAD 126162422 + 126162402 126162442 41 CCAAGAAGAGGCCCAACTCCCCAGAAAGCACCTCCAGCGAT CCAAGAAGAGGCCCAACTCCCCAAAAAGCACCTCCAGCGAT < 41bp 0.790182031716624 0.563572967116645 0.2771635 0.14988086 prediction 0.453218129199958 Functional Loss - TIRAP ENSG00000150455 CDS Human protein_coding chr11:126162422 chr11:126162425 nonsynonymous SNV 0.055 0 24 hm5C_associated_SNPs_77278 0 0 0 0 1 TIRAP chr11:126162372 3'AG 126162372 Downstream 54bp
chr7 36324354 36324354 1 + G T THCA 36324351 + 36324331 36324371 41 GCCGGCATGGAGCTGAGAGACGCGGGTTCACAGGAGAGCTC GCCGGCATGGAGCTGAGAGACGCTGGTTCACAGGAGAGCTC < 41bp 0.930029434191467 0.703422866174113 0.82473356 0.22309646 prediction 0.453213136034707 Functional Loss - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36324351 chr7:36324354 synonymous SNV . 0 24 hm5C_associated_SNPs_77279 0 0 1 0 2 EEPD1 chr7:36324295 3'AG 36324295 Downstream 60bp
chr7 36324354 36324354 1 + G T THCA 36324351 + 36324331 36324371 41 GCCGGCATGGAGCTGAGAGACGCGGGTTCACAGGAGAGCTC GCCGGCATGGAGCTGAGAGACGCTGGTTCACAGGAGAGCTC < 41bp 0.930029434191467 0.703422866174113 0.82473356 0.22309646 prediction 0.453213136034707 Functional Loss - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36324351 chr7:36324354 synonymous SNV . 0 24 hm5C_associated_SNPs_77279 0 0 1 0 2 EEPD1 chr7:36324429 5'GT 36324429 Upstream 76bp
chr10 5496393 5496393 1 + C T BLCA 5496391 + 5496371 5496411 41 TTGGAGTTTCCTAGATATCCCTCGAAGTCGCCTAGTCAAAT TTGGAGTTTCCTAGATATCCCTTGAAGTCGCCTAGTCAAAT < 41bp 0.726605588483478 0.420102328610441 0.27485305 0.05198002 prediction 0.453211176966955 Functional Loss - NET1 ENSG00000173848 CDS Human protein_coding chr10:5496391 chr10:5496393 stopgain 1.000 0 23 hm5C_associated_SNPs_77283 0 0 1 0 1 NET1 chr10:5496485 5'GT 5496485 Upstream 93bp
chr3 158369945 158369945 1 + G T GBM 158369943 + 158369923 158369963 41 GGGCGGCGGCCACTGACCACCGGCAGGAGCTAATTGAATGT GGGCGGCGGCCACTGACCACCGTCAGGAGCTAATTGAATGT < 41bp 0.890760041460913 0.66415668312142 0.38925987 0.20712748 prediction 0.453206716678987 Functional Loss - GFM1 ENSG00000168827 CDS Human protein_coding chr3:158369943 chr3:158369945 synonymous SNV . 0 23 hm5C_associated_SNPs_77284 0 0 1 4 1 GFM1 chr3:158369885 3'AG 158369885 Downstream 61bp
chrX 69455673 69455673 1 + G A SKCM 69455670 + 69455650 69455690 41 TGGACTGGAAGACCCCAGAGCGAGGTAAGACTCACAGACCT TGGACTGGAAGACCCCAGAGCGAAGTAAGACTCACAGACCT < 41bp 0.784926365906223 0.558323482160154 0.9386426 0.890116 prediction 0.453205767492139 Functional Loss - AWAT1 ENSG00000204195 CDS Human protein_coding chrX:69455670 chrX:69455673 nonsynonymous SNV 0.977 4 24 hm5C_associated_SNPs_77285 0 0 0 0 1 AWAT1 chrX:69455673 5'GT 69455673 Upstream 1bp
chr9 135864471 135864471 1 + C T UCEC 135864469 + 135864449 135864489 41 TCTTCTCCACCCCTCACGGGCTCGAAGTGCATGTGCGACGC TCTTCTCCACCCCTCACGGGCTTGAAGTGCATGTGCGACGC < 41bp 0.846751916760654 0.620149742494473 0.067326695 0.08694798 prediction 0.453204348532362 Functional Loss - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135864469 chr9:135864471 synonymous SNV . 0 23 hm5C_associated_SNPs_77286 0 0 0 0 1 GFI1B chr9:135864448 3'AG 135864448 Downstream 24bp
chr2 37468922 37468922 1 + G A STAD 37468919 + 37468899 37468939 41 TTTCCTGGTACCGAGATCTGCACGATGTTCCAAAAGGTAAT TTTCCTGGTACCGAGATCTGCACAATGTTCCAAAAGGTAAT < 41bp 0.726599528261997 0.497480530632791 0.053102672 0.027246684 prediction 0.453199056523994 Functional Loss - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37468919 chr2:37468922 nonsynonymous SNV 0.770 4 24 hm5C_associated_SNPs_77287 0 0 1 0 1 NDUFAF7 chr2:37468934 5'GT 37468934 Upstream 13bp
chr2 157439382 157439382 1 + C T SKCM 157439380 + 157439360 157439400 41 TGAAAACTGCAGAAGAGAACCTCGACAGAAGAGTTCCAATT TGAAAACTGCAGAAGAGAACCTTGACAGAAGAGTTCCAATT < 41bp 0.726598414866832 0.436964368690684 0.51575357 0.17628324 prediction 0.453196829733664 Functional Loss - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157439380 chr2:157439382 synonymous SNV . 0 23 hm5C_associated_SNPs_77288 0 0 1 0 2 GPD2 chr2:157439305 3'AG 157439305 Downstream 78bp
chr2 157439382 157439382 1 + C T SKCM 157439380 + 157439360 157439400 41 TGAAAACTGCAGAAGAGAACCTCGACAGAAGAGTTCCAATT TGAAAACTGCAGAAGAGAACCTTGACAGAAGAGTTCCAATT < 41bp 0.726598414866832 0.436964368690684 0.51575357 0.17628324 prediction 0.453196829733664 Functional Loss - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157439380 chr2:157439382 synonymous SNV . 0 23 hm5C_associated_SNPs_77288 0 0 1 0 2 GPD2 chr2:157439426 5'GT 157439426 Upstream 45bp
chr1 196748424 196748424 1 + G A SKCM 196748421 + 196748401 196748441 41 TGAACATTTTGAGACTCCTTCAGGAAGTTACTGGGATTACA TGAACATTTTGAGACTCCTTCAGAAAGTTACTGGGATTACA < 41bp 0.737453573140939 0.510858447355724 0.88641024 0.71619654 prediction 0.453190251570429 Functional Loss - CFHR3 ENSG00000116785 CDS Human protein_coding chr1:196748421 chr1:196748424 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_77289 0 0 0 0 1 CFHR3 chr1:196748486 5'GT 196748486 Upstream 63bp
chr3 11061952 11061952 1 + C T SKCM 11061949 + 11061929 11061969 41 TGGAACACAGACCGCTGCTTCTCCAACTACAGCATGGTCAA TGGAACACAGACCGCTGCTTCTCTAACTACAGCATGGTCAA < 41bp 0.726591267934846 0.491202077093245 0.94980687 0.7841959 prediction 0.453182535869692 Functional Loss - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11061949 chr3:11061952 synonymous SNV . 0 24 hm5C_associated_SNPs_77292 0 0 0 0 2 SLC6A1 chr3:11061899 3'AG 11061899 Downstream 54bp
chr3 11061952 11061952 1 + C T SKCM 11061949 + 11061929 11061969 41 TGGAACACAGACCGCTGCTTCTCCAACTACAGCATGGTCAA TGGAACACAGACCGCTGCTTCTCTAACTACAGCATGGTCAA < 41bp 0.726591267934846 0.491202077093245 0.94980687 0.7841959 prediction 0.453182535869692 Functional Loss - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11061949 chr3:11061952 synonymous SNV . 0 24 hm5C_associated_SNPs_77292 0 0 0 0 2 SLC6A1 chr3:11062008 5'GT 11062008 Upstream 57bp
chr7 99688740 99688740 1 + G A SKCM 99688737 + 99688717 99688757 41 CATTGGTGTAGACCACGTAGCCCGAATGACAGCAACAGGCA CATTGGTGTAGACCACGTAGCCCAAATGACAGCAACAGGCA < 41bp 0.777557866449465 0.550975446424313 0.30434328 0.12101242 prediction 0.453164840050304 Functional Loss - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99688737 chr7:99688740 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_77296 0 0 1 0 2 COPS6 chr7:99688661 3'AG 99688661 Downstream 80bp
chr7 99688740 99688740 1 + G A SKCM 99688737 + 99688717 99688757 41 CATTGGTGTAGACCACGTAGCCCGAATGACAGCAACAGGCA CATTGGTGTAGACCACGTAGCCCAAATGACAGCAACAGGCA < 41bp 0.777557866449465 0.550975446424313 0.30434328 0.12101242 prediction 0.453164840050304 Functional Loss - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99688737 chr7:99688740 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_77296 0 0 1 0 2 COPS6 chr7:99688775 5'GT 99688775 Upstream 36bp
chr6 161143514 161143514 1 + A T KICH 161143510 + 161143490 161143530 41 CAGAGCTACCGAGGCACATCCTCCACCACCACCACAGGAAA CAGAGCTACCGAGGCACATCCTCCTCCACCACCACAGGAAA < 41bp 0.726578958304476 0.356903133608176 0.922127 0.10447636 prediction 0.453157916608953 Functional Loss - PLG ENSG00000122194 CDS Human protein_coding chr6:161143510 chr6:161143514 nonsynonymous SNV 0.242 0 25 hm5C_associated_SNPs_77297 0 0 0 0 2 PLG chr6:161143440 3'AG 161143440 Downstream 75bp
chr6 161143514 161143514 1 + A T KICH 161143510 + 161143490 161143530 41 CAGAGCTACCGAGGCACATCCTCCACCACCACCACAGGAAA CAGAGCTACCGAGGCACATCCTCCTCCACCACCACAGGAAA < 41bp 0.726578958304476 0.356903133608176 0.922127 0.10447636 prediction 0.453157916608953 Functional Loss - PLG ENSG00000122194 CDS Human protein_coding chr6:161143510 chr6:161143514 nonsynonymous SNV 0.242 0 25 hm5C_associated_SNPs_77297 0 0 0 0 2 PLG chr6:161143599 5'GT 161143599 Upstream 86bp
chr20 3002788 3002788 1 + C T GBM 3002786 + 3002766 3002806 41 GACTTTGGGGTGCCTTTTACCCCGATCGGCATGCTCAAGTT GACTTTGGGGTGCCTTTTACCCTGATCGGCATGCTCAAGTT < 41bp 0.859555216881278 0.632981252964458 0.13512695 0.1136294 prediction 0.453147927833641 Functional Loss - PTPRA ENSG00000132670 CDS Human protein_coding chr20:3002786 chr20:3002788 nonsynonymous SNV 0.982 3 23 hm5C_associated_SNPs_77302 0 0 1 0 2 PTPRA chr20:3002700 3'AG 3002700 Downstream 89bp
chr20 3002788 3002788 1 + C T GBM 3002786 + 3002766 3002806 41 GACTTTGGGGTGCCTTTTACCCCGATCGGCATGCTCAAGTT GACTTTGGGGTGCCTTTTACCCTGATCGGCATGCTCAAGTT < 41bp 0.859555216881278 0.632981252964458 0.13512695 0.1136294 prediction 0.453147927833641 Functional Loss - PTPRA ENSG00000132670 CDS Human protein_coding chr20:3002786 chr20:3002788 nonsynonymous SNV 0.982 3 23 hm5C_associated_SNPs_77302 0 0 1 0 2 PTPRA chr20:3002866 5'GT 3002866 Upstream 79bp
chr1 9613837 9613837 1 + G A BLCA 9613834 + 9613814 9613854 41 GGAATGGTGAGACCAACATCCGTGACACCTGGACTCTTTCA GGAATGGTGAGACCAACATCCGTAACACCTGGACTCTTTCA < 41bp 0.75243527164584 0.525861395278433 0.3654927 0.19445214 prediction 0.453147752734814 Functional Loss - SLC25A33 ENSG00000171612 CDS Human protein_coding chr1:9613834 chr1:9613837 synonymous SNV . 0 24 hm5C_associated_SNPs_77303 0 0 1 0 1 SLC25A33 chr1:9613863 5'GT 9613863 Upstream 27bp
chr21 40752355 40752355 1 + C T rs536050361 40752353 + 40752333 40752373 41 ACTGGGCGTGGTTGCTGGTGCTCAGCTTCGTGTTTGGATGC ACTGGGCGTGGTTGCTGGTGCTTAGCTTCGTGTTTGGATGC < 41bp 0.747850204850587 0.521276500979651 0.075237095 0.08571094 prediction 0.453147407741871 Functional Loss - WRB;WRB-SH3BGR ENSG00000182093 CDS Human protein_coding chr21:40752353 chr21:40752355 synonymous SNV . 0 23 hm5C_associated_SNPs_77304 0 0 1 3 1 WRB;WRB-SH3BGR chr21:40752412 5'GT 40752412 Upstream 58bp
chr16 57790310 57790310 1 + G T THYM 57790308 + 57790288 57790328 41 CCTCCCTGAAGCTGATCCTGCAGCGGTTTCTGCCCCTCATC CCTCCCTGAAGCTGATCCTGCATCGGTTTCTGCCCCTCATC < 41bp 0.726571227617542 0.363135558918546 0.77905214 0.23381624 prediction 0.453142455235083 Functional Loss - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57790308 chr16:57790310 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_77305 0 0 1 0 2 KATNB1 chr16:57790268 3'AG 57790268 Downstream 43bp
chr16 57790310 57790310 1 + G T THYM 57790308 + 57790288 57790328 41 CCTCCCTGAAGCTGATCCTGCAGCGGTTTCTGCCCCTCATC CCTCCCTGAAGCTGATCCTGCATCGGTTTCTGCCCCTCATC < 41bp 0.726571227617542 0.363135558918546 0.77905214 0.23381624 prediction 0.453142455235083 Functional Loss - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57790308 chr16:57790310 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_77305 0 0 1 0 2 KATNB1 chr16:57790384 5'GT 57790384 Upstream 75bp
chr20 4163473 4163473 1 + G A COAD 4163470 + 4163450 4163490 41 GAGGCAGTGGCCGAGATCTGCACGGAGATGCTGCGTCAGTT GAGGCAGTGGCCGAGATCTGCACAGAGATGCTGCGTCAGTT < 41bp 0.768138386925885 0.541571088524399 0.58057725 0.25572717 prediction 0.453134596802973 Functional Loss - SMOX ENSG00000088826 CDS Human protein_coding chr20:4163470 chr20:4163473 synonymous SNV . 0 24 hm5C_associated_SNPs_77308 0 0 1 0 1 SMOX chr20:4163495 5'GT 4163495 Upstream 23bp
chr2 1497609 1497609 1 + C T PAAD 1497607 + 1497587 1497627 41 GAGGGAGTTCTGCGGCCTGCCTCGCCTGGAGACCCCCGCTG GAGGGAGTTCTGCGGCCTGCCTTGCCTGGAGACCCCCGCTG < 41bp 0.726565293185616 0.459480554147826 0.034469724 0.02167809 prediction 0.453130586371232 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1497607 chr2:1497609 nonsynonymous SNV 0.011 4 23 hm5C_associated_SNPs_77309 0 0 0 0 1 TPO chr2:1497574 3'AG 1497574 Downstream 36bp
chr11 89907064 89907064 1 + G T LUSC 89907062 + 89907042 89907082 41 GTTGGAAAAAGACCCTTCACCTGAAAATAAAAATTTGCCTA GTTGGAAAAAGACCCTTCACCTTAAAATAAAAATTTGCCTA < 41bp 0.726564432140826 0.403550649395876 0.08687854 0.045030326 prediction 0.453128864281652 Functional Loss - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89907062 chr11:89907064 stopgain 0.998 1 23 hm5C_associated_SNPs_77311 0 0 0 0 2 NAALAD2 chr11:89906992 3'AG 89906992 Downstream 73bp
chr11 89907064 89907064 1 + G T LUSC 89907062 + 89907042 89907082 41 GTTGGAAAAAGACCCTTCACCTGAAAATAAAAATTTGCCTA GTTGGAAAAAGACCCTTCACCTTAAAATAAAAATTTGCCTA < 41bp 0.726564432140826 0.403550649395876 0.08687854 0.045030326 prediction 0.453128864281652 Functional Loss - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89907062 chr11:89907064 stopgain 0.998 1 23 hm5C_associated_SNPs_77311 0 0 0 0 2 NAALAD2 chr11:89907083 5'GT 89907083 Upstream 20bp
chr7 128845562 128845562 1 + G C CESC 128845558 + 128845538 128845578 41 ATTGGCTGGCTGGCCCAGTTCATGGATGGTGCCCGCCGAGA ATTGGCTGGCTGGCCCAGTTCATGCATGGTGCCCGCCGAGA < 41bp 0.726564046186147 0.426948460104999 0.54387677 0.2677611 prediction 0.453128092372295 Functional Loss - SMO ENSG00000128602 CDS Human protein_coding chr7:128845558 chr7:128845562 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_77312 0 0 0 0 1 SMO chr7:128845623 5'GT 128845623 Upstream 62bp
chr1 65845091 65845091 1 + G T LGG 65845089 + 65845069 65845109 41 TGCTGTGCTCCCTTAGGTCTCAGAATGCAGTTGGCCCATTA TGCTGTGCTCCCTTAGGTCTCATAATGCAGTTGGCCCATTA < 41bp 0.726563432400989 0.376433410177189 0.7880046 0.21109763 prediction 0.453126864801977 Functional Loss - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65845089 chr1:65845091 stopgain 0.999 1 23 hm5C_associated_SNPs_77313 0 0 1 0 1 DNAJC6 chr1:65845085 3'AG 65845085 Downstream 7bp
chr19 41038580 41038580 1 + C T UCEC 41038578 + 41038558 41038598 41 GCTGATGGCGCGGGATGGCACGCGGGAGGACAACCACAAGC GCTGATGGCGCGGGATGGCACGTGGGAGGACAACCACAAGC < 41bp 0.797487283421766 0.570927233349298 0.76225746 0.84936196 prediction 0.453120100144937 Functional Loss - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41038578 chr19:41038580 nonsynonymous SNV 0.804 3 23 hm5C_associated_SNPs_77315 0 0 1 0 2 SPTBN4 chr19:41038532 3'AG 41038532 Downstream 49bp
chr19 41038580 41038580 1 + C T UCEC 41038578 + 41038558 41038598 41 GCTGATGGCGCGGGATGGCACGCGGGAGGACAACCACAAGC GCTGATGGCGCGGGATGGCACGTGGGAGGACAACCACAAGC < 41bp 0.797487283421766 0.570927233349298 0.76225746 0.84936196 prediction 0.453120100144937 Functional Loss - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41038578 chr19:41038580 nonsynonymous SNV 0.804 3 23 hm5C_associated_SNPs_77315 0 0 1 0 2 SPTBN4 chr19:41038678 5'GT 41038678 Upstream 99bp
chr16 58545342 58545342 1 + G A SARC 58545339 + 58545319 58545359 41 TCCACAGTGCCCTCAGCCAGCATGACCCGCCTGGCACGCTC TCCACAGTGCCCTCAGCCAGCATAACCCGCCTGGCACGCTC < 41bp 0.73464686364425 0.508095119414576 0.1874544 0.09987101 prediction 0.453103488459349 Functional Loss - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58545339 chr16:58545342 nonsynonymous SNV 0.986 3 24 hm5C_associated_SNPs_77318 0 0 0 0 1 NDRG4 chr16:58545326 3'AG 58545326 Downstream 17bp
chr20 33589805 33589805 1 + G A SKCM 33589802 + 33589782 33589822 41 ATCGCAAGGCCCAGCACGAGCTGGATGATGCGGAGGAGCGG ATCGCAAGGCCCAGCACGAGCTGAATGATGCGGAGGAGCGG < 41bp 0.761205877661413 0.534661617312587 0.6150201 0.23414525 prediction 0.453088520697653 Functional Loss - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33589802 chr20:33589805 nonsynonymous SNV 0.792 0 24 hm5C_associated_SNPs_77321 0 0 0 0 2 MYH7B chr20:33589751 3'AG 33589751 Downstream 55bp
chr20 33589805 33589805 1 + G A SKCM 33589802 + 33589782 33589822 41 ATCGCAAGGCCCAGCACGAGCTGGATGATGCGGAGGAGCGG ATCGCAAGGCCCAGCACGAGCTGAATGATGCGGAGGAGCGG < 41bp 0.761205877661413 0.534661617312587 0.6150201 0.23414525 prediction 0.453088520697653 Functional Loss - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33589802 chr20:33589805 nonsynonymous SNV 0.792 0 24 hm5C_associated_SNPs_77321 0 0 0 0 2 MYH7B chr20:33589888 5'GT 33589888 Upstream 84bp
chr15 74625613 74625613 1 + G A SKCM 74625610 + 74625590 74625630 41 GAGACTTGACAGAGAGGCTACAAGAGACGCATGGCCCAGGC GAGACTTGACAGAGAGGCTACAAAAGACGCATGGCCCAGGC < 41bp 0.765297401585549 0.538754296946107 0.8682504 0.6757603 prediction 0.453086209278885 Functional Loss - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74625610 chr15:74625613 nonsynonymous SNV 0.205 0 24 hm5C_associated_SNPs_77323 0 0 0 0 2 CCDC33 chr15:74625562 3'AG 74625562 Downstream 52bp
chr15 74625613 74625613 1 + G A SKCM 74625610 + 74625590 74625630 41 GAGACTTGACAGAGAGGCTACAAGAGACGCATGGCCCAGGC GAGACTTGACAGAGAGGCTACAAAAGACGCATGGCCCAGGC < 41bp 0.765297401585549 0.538754296946107 0.8682504 0.6757603 prediction 0.453086209278885 Functional Loss - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74625610 chr15:74625613 nonsynonymous SNV 0.205 0 24 hm5C_associated_SNPs_77323 0 0 0 0 2 CCDC33 chr15:74625663 5'GT 74625663 Upstream 51bp
chr2 219616465 219616465 1 + C T COAD 219616462 + 219616442 219616482 41 TGGGGACAAATGTCGAATGGCTCCAGAGCATGTCACTGCAC TGGGGACAAATGTCGAATGGCTCTAGAGCATGTCACTGCAC < 41bp 0.744399131942455 0.517862494440551 0.8871793 0.69450223 prediction 0.453073275003809 Functional Loss - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219616462 chr2:219616465 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_77328 0 0 1 0 2 TTLL4 chr2:219616427 3'AG 219616427 Downstream 39bp
chr2 219616465 219616465 1 + C T COAD 219616462 + 219616442 219616482 41 TGGGGACAAATGTCGAATGGCTCCAGAGCATGTCACTGCAC TGGGGACAAATGTCGAATGGCTCTAGAGCATGTCACTGCAC < 41bp 0.744399131942455 0.517862494440551 0.8871793 0.69450223 prediction 0.453073275003809 Functional Loss - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219616462 chr2:219616465 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_77328 0 0 1 0 2 TTLL4 chr2:219616529 5'GT 219616529 Upstream 65bp
chr3 46622663 46622663 1 + C T OV 46622661 + 46622641 46622681 41 GCACCTCGTGGCTTCCAGGACTCCAGAACTACCACCGTCTG GCACCTCGTGGCTTCCAGGACTTCAGAACTACCACCGTCTG < 41bp 0.844184806716064 0.61764829060534 0.897764 0.24283153 prediction 0.453073032221449 Functional Loss - TDGF1 ENSG00000241186 CDS Human protein_coding chr3:46622661 chr3:46622663 nonsynonymous SNV 0.386 0 23 hm5C_associated_SNPs_77329 0 0 0 0 1 TDGF1 chr3:46622622 3'AG 46622622 Downstream 42bp
chr12 48884601 48884601 1 + G A SKCM 48884598 + 48884578 48884618 41 TTCTCATTATTTTTCAGCTGCAGGAAGATGCTCGGATTCGA TTCTCATTATTTTTCAGCTGCAGAAAGATGCTCGGATTCGA < 41bp 0.726525762105664 0.497677687005941 0.5423772 0.38651985 prediction 0.453051524211329 Functional Loss - C12orf54 ENSG00000177627 CDS Human protein_coding chr12:48884598 chr12:48884601 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_77331 0 0 0 0 2 C12orf54 chr12:48884595 3'AG 48884595 Downstream 7bp
chr12 48884601 48884601 1 + G A SKCM 48884598 + 48884578 48884618 41 TTCTCATTATTTTTCAGCTGCAGGAAGATGCTCGGATTCGA TTCTCATTATTTTTCAGCTGCAGAAAGATGCTCGGATTCGA < 41bp 0.726525762105664 0.497677687005941 0.5423772 0.38651985 prediction 0.453051524211329 Functional Loss - C12orf54 ENSG00000177627 CDS Human protein_coding chr12:48884598 chr12:48884601 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_77331 0 0 0 0 2 C12orf54 chr12:48884619 5'GT 48884619 Upstream 19bp
chr20 33588931 33588931 1 + G A SKCM 33588928 + 33588908 33588948 41 GAACAGGCCGCCCTCCGTGGCGGGAAGAAGCAGGTGCAGAA GAACAGGCCGCCCTCCGTGGCGGAAAGAAGCAGGTGCAGAA < 41bp 0.741742804742957 0.515218334248636 0.92384684 0.8992438 prediction 0.453048940988641 Functional Loss - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33588928 chr20:33588931 synonymous SNV . 0 24 hm5C_associated_SNPs_77334 0 0 0 0 1 MYH7B chr20:33588961 5'GT 33588961 Upstream 31bp
chrX 147018105 147018105 1 + A C UCEC 147018101 + 147018081 147018121 41 TGTGAGGGTGAGGATTGAGGCTGAAAATGAGAAAAATGTTC TGTGAGGGTGAGGATTGAGGCTGACAATGAGAAAAATGTTC < 41bp 0.726523970093689 0.322374500642618 0.04536915 0.049557388 prediction 0.453047940187379 Functional Loss - FMR1 ENSG00000102081 CDS Human protein_coding chrX:147018101 chrX:147018105 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_77335 0 0 1 0 3 FMR1 chrX:147018023 3'AG 147018023 Downstream 83bp
chrX 147018105 147018105 1 + A C UCEC 147018101 + 147018081 147018121 41 TGTGAGGGTGAGGATTGAGGCTGAAAATGAGAAAAATGTTC TGTGAGGGTGAGGATTGAGGCTGACAATGAGAAAAATGTTC < 41bp 0.726523970093689 0.322374500642618 0.04536915 0.049557388 prediction 0.453047940187379 Functional Loss - FMR1 ENSG00000102081 CDS Human protein_coding chrX:147018101 chrX:147018105 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_77335 0 0 1 0 3 FMR1 chrX:147018029 3'AG 147018029 Downstream 77bp
chrX 147018105 147018105 1 + A C UCEC 147018101 + 147018081 147018121 41 TGTGAGGGTGAGGATTGAGGCTGAAAATGAGAAAAATGTTC TGTGAGGGTGAGGATTGAGGCTGACAATGAGAAAAATGTTC < 41bp 0.726523970093689 0.322374500642618 0.04536915 0.049557388 prediction 0.453047940187379 Functional Loss - FMR1 ENSG00000102081 CDS Human protein_coding chrX:147018101 chrX:147018105 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_77335 0 0 1 0 3 FMR1 chrX:147018132 5'GT 147018132 Upstream 28bp
chr17 56270423 56270423 1 + C T BLCA 56270421 + 56270401 56270441 41 TCCCCTGGGGCAGTGGAGACCTCGGTCCTGCGAGACTGCAT TCCCCTGGGGCAGTGGAGACCTTGGTCCTGCGAGACTGCAT < 41bp 0.814531932425 0.588009105646973 0.20177317 0.1709055 prediction 0.453045653556055 Functional Loss - EPX ENSG00000121053 CDS Human protein_coding chr17:56270421 chr17:56270423 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_77336 0 0 0 0 2 EPX chr17:56270399 3'AG 56270399 Downstream 25bp
chr17 56270423 56270423 1 + C T BLCA 56270421 + 56270401 56270441 41 TCCCCTGGGGCAGTGGAGACCTCGGTCCTGCGAGACTGCAT TCCCCTGGGGCAGTGGAGACCTTGGTCCTGCGAGACTGCAT < 41bp 0.814531932425 0.588009105646973 0.20177317 0.1709055 prediction 0.453045653556055 Functional Loss - EPX ENSG00000121053 CDS Human protein_coding chr17:56270421 chr17:56270423 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_77336 0 0 0 0 2 EPX chr17:56270492 5'GT 56270492 Upstream 70bp
chr9 113547935 113547935 1 + G A SKCM 113547932 + 113547912 113547952 41 ATTGCTCAGCCTGGAGTATCCAAGGAATAACATTGAATATG ATTGCTCAGCCTGGAGTATCCAAAGAATAACATTGAATATG < 41bp 0.758293711531381 0.53177368073142 0.52066153 0.17330214 prediction 0.453040061599921 Functional Loss - MUSK ENSG00000030304 CDS Human protein_coding chr9:113547932 chr9:113547935 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_77339 0 0 0 0 1 MUSK chr9:113547998 5'GT 113547998 Upstream 64bp
chr22 41895779 41895779 1 + G C HNSC 41895775 + 41895755 41895795 41 ATGTGGCCTCAGTCCTGTGCCAACGGGCCAAGGTGGCGATG ATGTGGCCTCAGTCCTGTGCCAACCGGCCAAGGTGGCGATG < 41bp 0.726518933189159 0.43161922834428 0.07342985 0.07446781 prediction 0.453037866378319 Functional Loss - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41895775 chr22:41895779 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_77340 0 0 1 0 2 ACO2 chr22:41895730 3'AG 41895730 Downstream 50bp
chr22 41895779 41895779 1 + G C HNSC 41895775 + 41895755 41895795 41 ATGTGGCCTCAGTCCTGTGCCAACGGGCCAAGGTGGCGATG ATGTGGCCTCAGTCCTGTGCCAACCGGCCAAGGTGGCGATG < 41bp 0.726518933189159 0.43161922834428 0.07342985 0.07446781 prediction 0.453037866378319 Functional Loss - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41895775 chr22:41895779 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_77340 0 0 1 0 2 ACO2 chr22:41895866 5'GT 41895866 Upstream 88bp
chr11 33667500 33667500 1 + G A LUAD 33667497 + 33667477 33667517 41 GGAGGTGGTGACCAGCGCTCCGGGGACCATGACGCGGCCCA GGAGGTGGTGACCAGCGCTCCGGAGACCATGACGCGGCCCA < 41bp 0.771736168858812 0.545217690982875 0.9252752 0.9058344 prediction 0.453036955751875 Functional Loss - KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33667497 chr11:33667500 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_77342 0 0 0 0 1 KIAA1549L chr11:33667582 5'GT 33667582 Upstream 83bp
chr12 69083327 69083327 1 + G T UCEC 69083324 + 69083304 69083344 41 GTTGTACAGTTCAGGCATCTCAAGATGAAAATTTTGGTAAT GTTGTACAGTTCAGGCATCTCAATATGAAAATTTTGGTAAT < 41bp 0.800721156516174 0.574209522769906 0.8045403 0.24536854 prediction 0.453023267492535 Functional Loss - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69083324 chr12:69083327 nonsynonymous SNV 0.941 1 24 hm5C_associated_SNPs_77345 0 0 1 0 2 NUP107 chr12:69083313 3'AG 69083313 Downstream 15bp
chr12 69083327 69083327 1 + G T UCEC 69083324 + 69083304 69083344 41 GTTGTACAGTTCAGGCATCTCAAGATGAAAATTTTGGTAAT GTTGTACAGTTCAGGCATCTCAATATGAAAATTTTGGTAAT < 41bp 0.800721156516174 0.574209522769906 0.8045403 0.24536854 prediction 0.453023267492535 Functional Loss - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69083324 chr12:69083327 nonsynonymous SNV 0.941 1 24 hm5C_associated_SNPs_77345 0 0 1 0 2 NUP107 chr12:69083399 5'GT 69083399 Upstream 73bp
chr11 134184266 134184266 1 + G T UCEC 134184264 + 134184244 134184284 41 AGCCTGTCCCAGACAGCCACCAGGGCCCGGCCTTCTACTGT AGCCTGTCCCAGACAGCCACCATGGCCCGGCCTTCTACTGT < 41bp 0.726508429239637 0.362050867224013 0.905149 0.20759302 prediction 0.453016858479274 Functional Loss - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134184264 chr11:134184266 nonsynonymous SNV 0.115 1 23 hm5C_associated_SNPs_77351 0 0 0 0 2 GLB1L3 chr11:134184224 3'AG 134184224 Downstream 43bp
chr11 134184266 134184266 1 + G T UCEC 134184264 + 134184244 134184284 41 AGCCTGTCCCAGACAGCCACCAGGGCCCGGCCTTCTACTGT AGCCTGTCCCAGACAGCCACCATGGCCCGGCCTTCTACTGT < 41bp 0.726508429239637 0.362050867224013 0.905149 0.20759302 prediction 0.453016858479274 Functional Loss - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134184264 chr11:134184266 nonsynonymous SNV 0.115 1 23 hm5C_associated_SNPs_77351 0 0 0 0 2 GLB1L3 chr11:134184335 5'GT 134184335 Upstream 70bp
chr7 127894477 127894477 1 + G T UCEC 127894475 + 127894455 127894495 41 AGCAGTCAGTCTCCTCCAAACAGAAAGTCACCGGTTTGGAC AGCAGTCAGTCTCCTCCAAACATAAAGTCACCGGTTTGGAC < 41bp 0.726500127111339 0.379720733579736 0.35152644 0.07538617 prediction 0.453000254222678 Functional Loss - LEP ENSG00000174697 CDS Human protein_coding chr7:127894475 chr7:127894477 nonsynonymous SNV 0.052 0 23 hm5C_associated_SNPs_77352 0 0 0 0 2 LEP chr7:127894457 3'AG 127894457 Downstream 21bp
chr7 127894477 127894477 1 + G T UCEC 127894475 + 127894455 127894495 41 AGCAGTCAGTCTCCTCCAAACAGAAAGTCACCGGTTTGGAC AGCAGTCAGTCTCCTCCAAACATAAAGTCACCGGTTTGGAC < 41bp 0.726500127111339 0.379720733579736 0.35152644 0.07538617 prediction 0.453000254222678 Functional Loss - LEP ENSG00000174697 CDS Human protein_coding chr7:127894475 chr7:127894477 nonsynonymous SNV 0.052 0 23 hm5C_associated_SNPs_77352 0 0 0 0 2 LEP chr7:127894460 3'AG 127894460 Downstream 18bp
chr3 49044877 49044877 1 + G A BLCA 49044874 + 49044854 49044894 41 CGAGGATCGACATGGACGCTCTCGAGGACTACGTTTGGCCG CGAGGATCGACATGGACGCTCTCAAGGACTACGTTTGGCCG < 41bp 0.754419939098106 0.527934096255418 0.57091725 0.27118188 prediction 0.452971685685375 Functional Loss - WDR6 ENSG00000178252 CDS Human protein_coding chr3:49044874 chr3:49044877 nonsynonymous SNV 0.839 0 24 hm5C_associated_SNPs_77357 0 0 1 0 1 WDR6 chr3:49044964 5'GT 49044964 Upstream 88bp
chr17 37871598 37871598 1 + T C SKCM 37871597 + 37871577 37871617 41 AGCTCCAAGTGTTTGAGACTCTGGAAGAGATCACAGGTGGG AGCTCCAAGTGTTTGAGACTCCGGAAGAGATCACAGGTGGG < 41bp 0.784727699908267 0.558242766404853 0.4322979 0.4881733 prediction 0.452969867006828 Functional Loss - ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37871597 chr17:37871598 nonsynonymous SNV 0.986 4 22 hm5C_associated_SNPs_77359 0 0 1 0 2 ERBB2 chr17:37871539 3'AG 37871539 Downstream 60bp
chr17 37871598 37871598 1 + T C SKCM 37871597 + 37871577 37871617 41 AGCTCCAAGTGTTTGAGACTCTGGAAGAGATCACAGGTGGG AGCTCCAAGTGTTTGAGACTCCGGAAGAGATCACAGGTGGG < 41bp 0.784727699908267 0.558242766404853 0.4322979 0.4881733 prediction 0.452969867006828 Functional Loss - ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37871597 chr17:37871598 nonsynonymous SNV 0.986 4 22 hm5C_associated_SNPs_77359 0 0 1 0 2 ERBB2 chr17:37871612 5'GT 37871612 Upstream 15bp
chr19 55174519 55174519 1 + G A rs147307497 55174516 + 55174496 55174536 41 CCTTCACGGCTCTGCTCTGCCTCGGTGAGATTTAAAGAGGG CCTTCACGGCTCTGCTCTGCCTCAGTGAGATTTAAAGAGGG < 41bp 0.76594884624887 0.539463935488176 0.114334404 0.1044358 prediction 0.452969821521388 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55174516 chr19:55174519 nonsynonymous SNV 0.120 3 24 hm5C_associated_SNPs_77360 0 0 0 0 1 LILRB4 chr19:55174519 5'GT 55174519 Upstream 1bp
chr14 76668066 76668066 1 + G T OV 76668064 + 76668044 76668084 41 TGCAGTGGAGCCAACCACACCAGCATCACAAGCCCCCAAAT TGCAGTGGAGCCAACCACACCATCATCACAAGCCCCCAAAT < 41bp 0.726481266786256 0.387495682524138 0.0670535 0.004723698 prediction 0.452962533572511 Functional Loss - GPATCH2L ENSG00000089916 CDS Human protein_coding chr14:76668064 chr14:76668066 nonsynonymous SNV 0.284 0 23 hm5C_associated_SNPs_77363 0 0 1 1 1 GPATCH2L chr14:76668034 3'AG 76668034 Downstream 33bp
chr7 131128432 131128432 1 + C T UCEC 131128430 + 131128410 131128450 41 TGGGCCTGAGGACATCCAGTCTCGAATAGGACACTGCATGT TGGGCCTGAGGACATCCAGTCTTGAATAGGACACTGCATGT < 41bp 0.726476410379701 0.428971502386154 0.7189522 0.056639493 prediction 0.452952820759402 Functional Loss - MKLN1 ENSG00000128585 CDS Human protein_coding chr7:131128430 chr7:131128432 stopgain 1.000 1 23 hm5C_associated_SNPs_77368 0 0 1 0 1 MKLN1 chr7:131128461 5'GT 131128461 Upstream 30bp
chr19 41727914 41727914 1 + T C STAD 41727913 + 41727893 41727933 41 GGCTCCAGGATGCTGTCCCCCTGGCCACGGCTCCAGGTCAC GGCTCCAGGATGCTGTCCCCCCGGCCACGGCTCCAGGTCAC < 41bp 0.72647426695182 0.488594964380903 0.114571095 0.16467747 prediction 0.452948533903641 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41727913 chr19:41727914 nonsynonymous SNV 0.107 4 22 hm5C_associated_SNPs_77370 0 0 0 0 1 AXL chr19:41727961 5'GT 41727961 Upstream 48bp
chr19 10748940 10748940 1 + G T LUSC 10748937 + 10748917 10748957 41 TTCTTCTTCACCCACCGTATCAGGATCGTGCAGGATACAGC TTCTTCTTCACCCACCGTATCAGTATCGTGCAGGATACAGC < 41bp 0.726471908255702 0.319496500286162 0.584976 0.020171553 prediction 0.452943816511404 Functional Loss - SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10748937 chr19:10748940 nonsynonymous SNV 0.961 1 24 hm5C_associated_SNPs_77372 0 0 1 0 2 SLC44A2 chr19:10748903 3'AG 10748903 Downstream 38bp
chr19 10748940 10748940 1 + G T LUSC 10748937 + 10748917 10748957 41 TTCTTCTTCACCCACCGTATCAGGATCGTGCAGGATACAGC TTCTTCTTCACCCACCGTATCAGTATCGTGCAGGATACAGC < 41bp 0.726471908255702 0.319496500286162 0.584976 0.020171553 prediction 0.452943816511404 Functional Loss - SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10748937 chr19:10748940 nonsynonymous SNV 0.961 1 24 hm5C_associated_SNPs_77372 0 0 1 0 2 SLC44A2 chr19:10748991 5'GT 10748991 Upstream 52bp
chr2 3691096 3691096 1 + C T LUSC 3691094 + 3691074 3691114 41 GGAGATGGACAACCAGGTCTCTCAGCTGACCAGCGAGCTCA GGAGATGGACAACCAGGTCTCTTAGCTGACCAGCGAGCTCA < 41bp 0.807508231700231 0.581037429806776 0.39085665 0.1881262 prediction 0.452941603786911 Functional Loss - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3691094 chr2:3691096 stopgain 0.735 1 23 hm5C_associated_SNPs_77374 0 0 0 0 2 COLEC11 chr2:3691034 3'AG 3691034 Downstream 63bp
chr2 3691096 3691096 1 + C T LUSC 3691094 + 3691074 3691114 41 GGAGATGGACAACCAGGTCTCTCAGCTGACCAGCGAGCTCA GGAGATGGACAACCAGGTCTCTTAGCTGACCAGCGAGCTCA < 41bp 0.807508231700231 0.581037429806776 0.39085665 0.1881262 prediction 0.452941603786911 Functional Loss - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3691094 chr2:3691096 stopgain 0.735 1 23 hm5C_associated_SNPs_77374 0 0 0 0 2 COLEC11 chr2:3691129 5'GT 3691129 Upstream 34bp
chr9 137007160 137007160 1 + G A UCEC 137007157 + 137007137 137007177 41 TTGAAGATATGGGACGTGAGCTCGGTAAGTGACACTCAGTG TTGAAGATATGGGACGTGAGCTCAGTAAGTGACACTCAGTG < 41bp 0.762266932081966 0.53580353460258 0.12498909 0.11045802 prediction 0.452926794958771 Functional Loss - WDR5 ENSG00000196363 CDS Human protein_coding chr9:137007157 chr9:137007160 synonymous SNV . 0 24 hm5C_associated_SNPs_77376 0 0 1 0 2 WDR5 chr9:137007071 3'AG 137007071 Downstream 90bp
chr9 137007160 137007160 1 + G A UCEC 137007157 + 137007137 137007177 41 TTGAAGATATGGGACGTGAGCTCGGTAAGTGACACTCAGTG TTGAAGATATGGGACGTGAGCTCAGTAAGTGACACTCAGTG < 41bp 0.762266932081966 0.53580353460258 0.12498909 0.11045802 prediction 0.452926794958771 Functional Loss - WDR5 ENSG00000196363 CDS Human protein_coding chr9:137007157 chr9:137007160 synonymous SNV . 0 24 hm5C_associated_SNPs_77376 0 0 1 0 2 WDR5 chr9:137007160 5'GT 137007160 Upstream 1bp
chr9 138454732 138454732 1 + G A COAD 138454729 + 138454709 138454749 41 ACTGAGAATCCAAAGAAGTTCAAGATCAACTGTGAGTGTCC ACTGAGAATCCAAAGAAGTTCAAAATCAACTGTGAGTGTCC < 41bp 0.726462925852714 0.492448030556846 0.33226296 0.27011514 prediction 0.452925851705428 Functional Loss - PAEP ENSG00000122133 CDS Human protein_coding chr9:138454729 chr9:138454732 synonymous SNV . 0 24 hm5C_associated_SNPs_77377 0 0 0 1 2 PAEP chr9:138454666 3'AG 138454666 Downstream 67bp
chr9 138454732 138454732 1 + G A COAD 138454729 + 138454709 138454749 41 ACTGAGAATCCAAAGAAGTTCAAGATCAACTGTGAGTGTCC ACTGAGAATCCAAAGAAGTTCAAAATCAACTGTGAGTGTCC < 41bp 0.726462925852714 0.492448030556846 0.33226296 0.27011514 prediction 0.452925851705428 Functional Loss - PAEP ENSG00000122133 CDS Human protein_coding chr9:138454729 chr9:138454732 synonymous SNV . 0 24 hm5C_associated_SNPs_77377 0 0 0 1 2 PAEP chr9:138454739 5'GT 138454739 Upstream 8bp
chr19 15784434 15784434 1 + C T KIRC 15784432 + 15784412 15784452 41 GTTGTGGGCTCCTGGCTACTCGCCCGCATCCTGGCTTGGAC GTTGTGGGCTCCTGGCTACTCGTCCGCATCCTGGCTTGGAC < 41bp 0.812541123326059 0.586089038992141 0.022963166 0.020487368 prediction 0.452904168667837 Functional Loss - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15784432 chr19:15784434 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_77386 0 0 1 0 1 CYP4F12 chr19:15784339 3'AG 15784339 Downstream 96bp
chr10 85909981 85909981 1 + G A rs377523783 85909978 + 85909958 85909998 41 CCCTGGGAGTGGGCCTGGGTCTCGTCTTTGTGTCCTCATTG CCCTGGGAGTGGGCCTGGGTCTCATCTTTGTGTCCTCATTG < 41bp 0.790859663137942 0.564411272718734 0.22259453 0.12379566 prediction 0.452896780838415 Functional Loss - GHITM ENSG00000165678 CDS Human protein_coding chr10:85909978 chr10:85909981 nonsynonymous SNV 0.964 2 24 hm5C_associated_SNPs_77390 0 0 1 0 1 GHITM chr10:85909999 5'GT 85909999 Upstream 19bp
chrX 100646010 100646010 1 + C T KIRP 100646008 + 100645988 100646028 41 CCTCGCGGTTTCTTTCTTTCCGCGCCGATAGCGCTCACGCA CCTCGCGGTTTCTTTCTTTCCGTGCCGATAGCGCTCACGCA < 41bp 0.772201762978668 0.545755630895904 0.07288906 0.055777162 prediction 0.452892264165528 Functional Loss - RPL36A;RPL36A-HNRNPH2 ENSG00000241343;ENSG00000257529 CDS Human other chrX:100646008 chrX:100646010 synonymous SNV . 0 23 hm5C_associated_SNPs_77393 0 0 1 0 1 RPL36A;RPL36A-HNRNPH2 chrX:100646034 5'GT 100646034 Upstream 25bp
chr8 99961765 99961765 1 + G A SKCM 99961762 + 99961742 99961782 41 CTCATCCATGAGAGGACCCACACGGACGAGAGGCCGTACAC CTCATCCATGAGAGGACCCACACAGACGAGAGGCCGTACAC < 41bp 0.770891847247783 0.544451966350865 0.114587486 0.0205338 prediction 0.452879761793834 Functional Loss - OSR2 ENSG00000164920 CDS Human protein_coding chr8:99961762 chr8:99961765 synonymous SNV . 0 24 hm5C_associated_SNPs_77395 0 0 1 0 1 OSR2 chr8:99961836 5'GT 99961836 Upstream 72bp
chr4 4411393 4411393 1 + G A KIRC 4411390 + 4411370 4411410 41 ACAAGTATGACCGCGCCTGCCCCGATGGGTTCGTCCTCAAG ACAAGTATGACCGCGCCTGCCCCAATGGGTTCGTCCTCAAG < 41bp 0.726435741400828 0.480999827618728 0.11599401 0.1460155 prediction 0.452871482801656 Functional Loss - NSG1 ENSG00000168824 CDS Human protein_coding chr4:4411390 chr4:4411393 nonsynonymous SNV 0.704 1 24 hm5C_associated_SNPs_77397 0 0 1 0 2 NSG1 chr4:4411300 3'AG 4411300 Downstream 94bp
chr4 4411393 4411393 1 + G A KIRC 4411390 + 4411370 4411410 41 ACAAGTATGACCGCGCCTGCCCCGATGGGTTCGTCCTCAAG ACAAGTATGACCGCGCCTGCCCCAATGGGTTCGTCCTCAAG < 41bp 0.726435741400828 0.480999827618728 0.11599401 0.1460155 prediction 0.452871482801656 Functional Loss - NSG1 ENSG00000168824 CDS Human protein_coding chr4:4411390 chr4:4411393 nonsynonymous SNV 0.704 1 24 hm5C_associated_SNPs_77397 0 0 1 0 2 NSG1 chr4:4411410 5'GT 4411410 Upstream 18bp
chr17 48745040 48745040 1 + G T LUAD 48745038 + 48745018 48745058 41 AGCAGGTGGAGGGCATCAGGCAGGGTGAGCTCCAGCTGCTG AGCAGGTGGAGGGCATCAGGCATGGTGAGCTCCAGCTGCTG < 41bp 0.916213857464303 0.689779510266496 0.9046812 0.8291861 prediction 0.452868694395614 Functional Loss - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48745038 chr17:48745040 nonsynonymous SNV 0.719 1 23 hm5C_associated_SNPs_77398 0 0 1 0 1 ABCC3 chr17:48745118 5'GT 48745118 Upstream 79bp
chr1 6681484 6681484 1 + G A LGG 6681481 + 6681461 6681501 41 TTCCTTCCAGATGACGATTCCTGGGACCTCGTGACCTGCTT TTCCTTCCAGATGACGATTCCTGAGACCTCGTGACCTGCTT < 41bp 0.726433505156345 0.487921605917531 0.27636033 0.16171029 prediction 0.452867010312691 Functional Loss - PHF13 ENSG00000116273 CDS Human protein_coding chr1:6681481 chr1:6681484 stopgain 1.000 1 24 hm5C_associated_SNPs_77399 0 0 1 0 1 PHF13 chr1:6681471 3'AG 6681471 Downstream 14bp
chr7 100320640 100320640 1 + C T LUAD 100320638 + 100320618 100320658 41 TCCAGATGCGGCCTCAGCTGCTCCACTCCGAACAATCACTG TCCAGATGCGGCCTCAGCTGCTTCACTCCGAACAATCACTG < 41bp 0.726432569788607 0.446538864797189 0.10020283 0.04437521 prediction 0.452865139577215 Functional Loss - EPO ENSG00000130427 CDS Human protein_coding chr7:100320638 chr7:100320640 nonsynonymous SNV 0.945 1 23 hm5C_associated_SNPs_77402 0 0 0 0 2 EPO chr7:100320601 3'AG 100320601 Downstream 40bp
chr7 100320640 100320640 1 + C T LUAD 100320638 + 100320618 100320658 41 TCCAGATGCGGCCTCAGCTGCTCCACTCCGAACAATCACTG TCCAGATGCGGCCTCAGCTGCTTCACTCCGAACAATCACTG < 41bp 0.726432569788607 0.446538864797189 0.10020283 0.04437521 prediction 0.452865139577215 Functional Loss - EPO ENSG00000130427 CDS Human protein_coding chr7:100320638 chr7:100320640 nonsynonymous SNV 0.945 1 23 hm5C_associated_SNPs_77402 0 0 0 0 2 EPO chr7:100320604 3'AG 100320604 Downstream 37bp
chr19 51827147 51827147 1 + C T UCEC 51827145 + 51827125 51827165 41 CTCAGGTCTACCTCATTGTCCACGGTGAGCCCTTGGCCGGG CTCAGGTCTACCTCATTGTCCATGGTGAGCCCTTGGCCGGG < 41bp 0.805744440812885 0.579324014078636 0.23282999 0.15417087 prediction 0.452840853468499 Functional Loss - IGLON5 ENSG00000142549 CDS Human protein_coding chr19:51827145 chr19:51827147 synonymous SNV . 0 23 hm5C_associated_SNPs_77409 0 0 0 0 1 IGLON5 chr19:51827148 5'GT 51827148 Upstream 2bp
chr2 220072422 220072422 1 + G T CESC 220072419 + 220072399 220072439 41 TAATGTGCCTGTGCCTGTGGCCAGAGGGGAGCCCCCTGACC TAATGTGCCTGTGCCTGTGGCCATAGGGGAGCCCCCTGACC < 41bp 0.726417959125941 0.333725117044751 0.880807 0.79183763 prediction 0.452835918251882 Functional Loss - ZFAND2B ENSG00000158552 CDS Human protein_coding chr2:220072419 chr2:220072422 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_77410 0 0 1 0 2 ZFAND2B chr2:220072370 3'AG 220072370 Downstream 53bp
chr2 220072422 220072422 1 + G T CESC 220072419 + 220072399 220072439 41 TAATGTGCCTGTGCCTGTGGCCAGAGGGGAGCCCCCTGACC TAATGTGCCTGTGCCTGTGGCCATAGGGGAGCCCCCTGACC < 41bp 0.726417959125941 0.333725117044751 0.880807 0.79183763 prediction 0.452835918251882 Functional Loss - ZFAND2B ENSG00000158552 CDS Human protein_coding chr2:220072419 chr2:220072422 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_77410 0 0 1 0 2 ZFAND2B chr2:220072501 5'GT 220072501 Upstream 80bp
chr8 39842520 39842520 1 + G A rs537412989 39842517 + 39842497 39842537 41 CTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAACCTCTG CTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAACCTCTG < 41bp 0.749259098118705 0.522843550183056 0.78943026 0.38735554 prediction 0.452831095871297 Functional Loss - IDO2 ENSG00000253939 ncRNA_intronic Human antisense chr8:39842517 chr8:39842520 . . 0 24 hm5C_associated_SNPs_77413 0 0 0 0 1 IDO2 chr8:39842470 3'AG 39842470 Downstream 51bp
chr1 219366581 219366581 1 + A C UCEC 219366580 + 219366560 219366600 41 AAAAGTGGCATCAAGAAGAACAGGATATTAATAGGTAAGAC AAAAGTGGCATCAAGAAGAACCGGATATTAATAGGTAAGAC < 41bp 0.765968965217414 0.539557570438418 0.479704 0.5862939 prediction 0.452822789557992 Functional Loss - LYPLAL1 ENSG00000143353 CDS Human protein_coding chr1:219366580 chr1:219366581 synonymous SNV . 0 22 hm5C_associated_SNPs_77417 0 0 1 0 1 LYPLAL1 chr1:219366593 5'GT 219366593 Upstream 13bp
chr2 95943725 95943725 1 + G A SKCM 95943722 + 95943702 95943742 41 CACCAGCTAAAAGGTGTCCCCGAGGCCAACTTCTCCAGCAT CACCAGCTAAAAGGTGTCCCCGAAGCCAACTTCTCCAGCAT < 41bp 0.726410710966117 0.472050344802187 0.88890994 0.42034605 prediction 0.452821421932235 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95943722 chr2:95943725 synonymous SNV . 0 24 hm5C_associated_SNPs_77418 0 0 0 0 2 PROM2 chr2:95943678 3'AG 95943678 Downstream 48bp
chr2 95943725 95943725 1 + G A SKCM 95943722 + 95943702 95943742 41 CACCAGCTAAAAGGTGTCCCCGAGGCCAACTTCTCCAGCAT CACCAGCTAAAAGGTGTCCCCGAAGCCAACTTCTCCAGCAT < 41bp 0.726410710966117 0.472050344802187 0.88890994 0.42034605 prediction 0.452821421932235 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95943722 chr2:95943725 synonymous SNV . 0 24 hm5C_associated_SNPs_77418 0 0 0 0 2 PROM2 chr2:95943752 5'GT 95943752 Upstream 28bp
chr20 46281219 46281219 1 + G A SKCM 46281216 + 46281196 46281236 41 TCCCAATGCAATGATGTCGTCAAGAATGGGTCCCTCCCAGA TCCCAATGCAATGATGTCGTCAAAAATGGGTCCCTCCCAGA < 41bp 0.757156847153511 0.530748762948395 0.23333928 0.14481705 prediction 0.452816168410232 Functional Loss - NCOA3 ENSG00000124151 CDS Human protein_coding chr20:46281216 chr20:46281219 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_77421 0 0 1 0 1 NCOA3 chr20:46281150 3'AG 46281150 Downstream 70bp
chr19 12866516 12866516 1 + G A SKCM 12866513 + 12866493 12866533 41 CGGCTCAGGGTTACAAAGACCACGACCTAGACCTGTGTGTG CGGCTCAGGGTTACAAAGACCACAACCTAGACCTGTGTGTG < 41bp 0.777099513094697 0.550692240916683 0.090646 0.09852162 prediction 0.452814544356027 Functional Loss - BEST2 ENSG00000039987 CDS Human protein_coding chr19:12866513 chr19:12866516 nonsynonymous SNV 0.937 1 24 hm5C_associated_SNPs_77422 0 0 0 0 2 BEST2 chr19:12866429 3'AG 12866429 Downstream 88bp
chr19 12866516 12866516 1 + G A SKCM 12866513 + 12866493 12866533 41 CGGCTCAGGGTTACAAAGACCACGACCTAGACCTGTGTGTG CGGCTCAGGGTTACAAAGACCACAACCTAGACCTGTGTGTG < 41bp 0.777099513094697 0.550692240916683 0.090646 0.09852162 prediction 0.452814544356027 Functional Loss - BEST2 ENSG00000039987 CDS Human protein_coding chr19:12866513 chr19:12866516 nonsynonymous SNV 0.937 1 24 hm5C_associated_SNPs_77422 0 0 0 0 2 BEST2 chr19:12866581 5'GT 12866581 Upstream 66bp
chr19 35504556 35504556 1 + G A rs146626930 35504553 + 35504533 35504573 41 GGTTCGCGCCGTGGCCATGTCACGCCCAACCTTTCCCGAGC GGTTCGCGCCGTGGCCATGTCACACCCAACCTTTCCCGAGC < 41bp 0.726389011905503 0.471891748626533 0.06277445 0.0136678815 prediction 0.452778023811005 Functional Loss - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504553 chr19:35504556 synonymous SNV . 0 24 hm5C_associated_SNPs_77429 0 0 1 0 1 GRAMD1A chr19:35504595 5'GT 35504595 Upstream 40bp
chr19 42354626 42354626 1 + T C LUSC 42354625 + 42354605 42354645 41 CTCGTGCCTGGCCCGGACATCTGGTCCCTCAGAGTGGCAGC CTCGTGCCTGGCCCGGACATCCGGTCCCTCAGAGTGGCAGC < 41bp 0.762309076648771 0.535924608903104 0.51722854 0.52077484 prediction 0.452768935491334 Functional Loss - DMRTC2 ENSG00000142025 CDS Human protein_coding chr19:42354625 chr19:42354626 synonymous SNV . 0 22 hm5C_associated_SNPs_77430 0 0 0 0 1 DMRTC2 chr19:42354594 3'AG 42354594 Downstream 33bp
chr2 135616891 135616891 1 + G C rs117363436 135616887 + 135616867 135616907 41 AGAGTGGTGCGAGAGAATTGCTGGGATCCAGAAGTTCGTAT AGAGTGGTGCGAGAGAATTGCTGGCATCCAGAAGTTCGTAT < 41bp 0.851133206518934 0.62475239859742 0.4292216 0.17644465 prediction 0.452761615843029 Functional Loss - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135616887 chr2:135616891 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_77434 0 0 0 0 2 ACMSD chr2:135616831 3'AG 135616831 Downstream 61bp
chr2 135616891 135616891 1 + G C rs117363436 135616887 + 135616867 135616907 41 AGAGTGGTGCGAGAGAATTGCTGGGATCCAGAAGTTCGTAT AGAGTGGTGCGAGAGAATTGCTGGCATCCAGAAGTTCGTAT < 41bp 0.851133206518934 0.62475239859742 0.4292216 0.17644465 prediction 0.452761615843029 Functional Loss - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135616887 chr2:135616891 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_77434 0 0 0 0 2 ACMSD chr2:135616927 5'GT 135616927 Upstream 37bp
chr17 27065703 27065703 1 + A C rs141650477 27065702 + 27065682 27065722 41 TCCCCAGACAGAGGCATCATCATGACATTCGGCAGCGGCAG TCCCCAGACAGAGGCATCATCCTGACATTCGGCAGCGGCAG < 41bp 0.726376874923262 0.451638292289912 0.410635 0.3719351 prediction 0.452753749846525 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27065702 chr17:27065703 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_77436 0 0 1 0 2 NEK8 chr17:27065689 3'AG 27065689 Downstream 15bp
chr17 27065703 27065703 1 + A C rs141650477 27065702 + 27065682 27065722 41 TCCCCAGACAGAGGCATCATCATGACATTCGGCAGCGGCAG TCCCCAGACAGAGGCATCATCCTGACATTCGGCAGCGGCAG < 41bp 0.726376874923262 0.451638292289912 0.410635 0.3719351 prediction 0.452753749846525 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27065702 chr17:27065703 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_77436 0 0 1 0 2 NEK8 chr17:27065765 5'GT 27065765 Upstream 63bp
chr17 27065705 27065705 1 + G T OV 27065702 + 27065682 27065722 41 TCCCCAGACAGAGGCATCATCATGACATTCGGCAGCGGCAG TCCCCAGACAGAGGCATCATCATTACATTCGGCAGCGGCAG < 41bp 0.726376874923262 0.318276090790876 0.410635 0.2087762 prediction 0.452753749846525 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27065702 chr17:27065705 nonsynonymous SNV 0.992 3 24 hm5C_associated_SNPs_77437 0 0 1 0 2 NEK8 chr17:27065689 3'AG 27065689 Downstream 17bp
chr17 27065705 27065705 1 + G T OV 27065702 + 27065682 27065722 41 TCCCCAGACAGAGGCATCATCATGACATTCGGCAGCGGCAG TCCCCAGACAGAGGCATCATCATTACATTCGGCAGCGGCAG < 41bp 0.726376874923262 0.318276090790876 0.410635 0.2087762 prediction 0.452753749846525 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27065702 chr17:27065705 nonsynonymous SNV 0.992 3 24 hm5C_associated_SNPs_77437 0 0 1 0 2 NEK8 chr17:27065765 5'GT 27065765 Upstream 61bp
chr3 142388321 142388321 1 + G A SKCM 142388318 + 142388298 142388338 41 CTCTGCCTGGCTACAAGGTGCGCGAGATTGTGGAGAAAATT CTCTGCCTGGCTACAAGGTGCGCAAGATTGTGGAGAAAATT < 41bp 0.729940639208371 0.503569338116712 0.44516408 0.26605055 prediction 0.452742602183317 Functional Loss - PLS1 ENSG00000120756 CDS Human protein_coding chr3:142388318 chr3:142388321 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_77439 0 0 0 0 2 PLS1 chr3:142388232 3'AG 142388232 Downstream 90bp
chr3 142388321 142388321 1 + G A SKCM 142388318 + 142388298 142388338 41 CTCTGCCTGGCTACAAGGTGCGCGAGATTGTGGAGAAAATT CTCTGCCTGGCTACAAGGTGCGCAAGATTGTGGAGAAAATT < 41bp 0.729940639208371 0.503569338116712 0.44516408 0.26605055 prediction 0.452742602183317 Functional Loss - PLS1 ENSG00000120756 CDS Human protein_coding chr3:142388318 chr3:142388321 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_77439 0 0 0 0 2 PLS1 chr3:142388395 5'GT 142388395 Upstream 75bp
chrX 50051515 50051515 1 + G A BRCA 50051512 + 50051492 50051532 41 GTTTCCTTCACAGGCATAAGCTGGAAGTCACACCAGTAGTA GTTTCCTTCACAGGCATAAGCTGAAAGTCACACCAGTAGTA < 41bp 0.765904897122482 0.539537441499041 0.44565156 0.2826721 prediction 0.452734911246881 Functional Loss - CCNB3 ENSG00000147082 CDS Human protein_coding chrX:50051512 chrX:50051515 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_77441 0 0 0 0 1 CCNB3 chrX:50051505 3'AG 50051505 Downstream 11bp
chr10 87407012 87407012 1 - T G HNSC 87407016 - 87406996 87407036 41 GCTGAACTCTGGCGGACCATCAGCAAGAACGGAGGGGCTGA GCTGAACTCTGGCGGACCATCAGCCAGAACGGAGGGGCTGA < 41bp 0.726362180752954 0.347677346397759 0.35843092 0.32263514 prediction 0.452724361505907 Functional Loss - GRID1 ENSG00000182771 CDS Human protein_coding chr10:87407016 chr10:87407012 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_77442 0 0 0 0 1 GRID1 chr10:87406959 5'GT 87406959 Upstream 54bp
chr8 56435863 56435863 1 + G A BRCA 56435860 + 56435840 56435880 41 GTTTCACAGCGGCAGCTTCCCTCGTGTCCCTGGCCTGGGCC GTTTCACAGCGGCAGCTTCCCTCATGTCCCTGGCCTGGGCC < 41bp 0.755902934556242 0.529542565948219 0.23906618 0.21057579 prediction 0.452720737216046 Functional Loss - XKR4 ENSG00000206579 CDS Human protein_coding chr8:56435860 chr8:56435863 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_77446 0 0 0 0 1 XKR4 chr8:56435840 3'AG 56435840 Downstream 24bp
chr16 18597164 18597164 1 + A C rs556700412 18597163 + 18597143 18597183 41 ATACAGGAGGCCACTGAGACCAAAAGACCTCTGGTCGCTTG ATACAGGAGGCCACTGAGACCCAAAGACCTCTGGTCGCTTG < 41bp 0.802922412277949 0.576568019745534 0.71024376 0.5816988 prediction 0.45270878506483 Functional Loss - ABCC6P1 ENSG00000256340 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:18597163 chr16:18597164 . . 0 22 hm5C_associated_SNPs_77451 0 0 0 0 2 ABCC6P1 chr16:18597128 3'AG 18597128 Downstream 37bp
chr16 18597164 18597164 1 + A C rs556700412 18597163 + 18597143 18597183 41 ATACAGGAGGCCACTGAGACCAAAAGACCTCTGGTCGCTTG ATACAGGAGGCCACTGAGACCCAAAGACCTCTGGTCGCTTG < 41bp 0.802922412277949 0.576568019745534 0.71024376 0.5816988 prediction 0.45270878506483 Functional Loss - ABCC6P1 ENSG00000256340 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:18597163 chr16:18597164 . . 0 22 hm5C_associated_SNPs_77451 0 0 0 0 2 ABCC6P1 chr16:18597259 5'GT 18597259 Upstream 96bp
chr19 50173481 50173481 1 + G A STAD 50173478 + 50173458 50173498 41 TCTTCCACCCTACAGCTGGCCTCGGACCCCGCCCTGCGCAG TCTTCCACCCTACAGCTGGCCTCAGACCCCGCCCTGCGCAG < 41bp 0.744120637104535 0.517771731750632 0.31087294 0.1776092 prediction 0.452697810707807 Functional Loss - BCL2L12 ENSG00000126453 CDS Human protein_coding chr19:50173478 chr19:50173481 synonymous SNV . 0 24 hm5C_associated_SNPs_77454 0 0 1 0 1 BCL2L12 chr19:50173473 3'AG 50173473 Downstream 9bp
chr19 7682688 7682688 1 + G A COAD 7682685 + 7682665 7682705 41 TTCCTGATCCTCTTTCGCGACTCGAGCTGCCAGTTCCGGGC TTCCTGATCCTCTTTCGCGACTCAAGCTGCCAGTTCCGGGC < 41bp 0.753474381642043 0.527125939546735 0.3558454 0.22796246 prediction 0.452696884190616 Functional Loss - CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7682685 chr19:7682688 synonymous SNV . 0 24 hm5C_associated_SNPs_77455 0 0 0 0 1 CAMSAP3 chr19:7682638 3'AG 7682638 Downstream 51bp
chr11 57427353 57427353 1 + C T LUAD 57427351 + 57427331 57427371 41 CTACAGTGTGTCGCCTTCTGCTCAACTACGCAGTGCGTTTG CTACAGTGTGTCGCCTTCTGCTTAACTACGCAGTGCGTTTG < 41bp 0.845572237301351 0.619228157960981 0.29767478 0.23979855 prediction 0.452688158680742 Functional Loss - CLP1 ENSG00000172409 CDS Human protein_coding chr11:57427351 chr11:57427353 synonymous SNV . 0 23 hm5C_associated_SNPs_77456 0 0 0 0 1 CLP1 chr11:57427362 5'GT 57427362 Upstream 10bp
chr4 90844324 90844324 1 + G A COAD 90844321 + 90844301 90844341 41 CTTTCTGCTTCCTTCTAGCCCAGGAACAGCAAAGTTTGATA CTTTCTGCTTCCTTCTAGCCCAGAAACAGCAAAGTTTGATA < 41bp 0.749488058505161 0.523145079942862 0.2411519 0.06668022 prediction 0.452685957124598 Functional Loss - MMRN1 ENSG00000138722 CDS Human protein_coding chr4:90844321 chr4:90844324 nonsynonymous SNV 0.004 1 24 hm5C_associated_SNPs_77457 0 0 0 0 2 MMRN1 chr4:90844319 3'AG 90844319 Downstream 6bp
chr4 90844324 90844324 1 + G A COAD 90844321 + 90844301 90844341 41 CTTTCTGCTTCCTTCTAGCCCAGGAACAGCAAAGTTTGATA CTTTCTGCTTCCTTCTAGCCCAGAAACAGCAAAGTTTGATA < 41bp 0.749488058505161 0.523145079942862 0.2411519 0.06668022 prediction 0.452685957124598 Functional Loss - MMRN1 ENSG00000138722 CDS Human protein_coding chr4:90844321 chr4:90844324 nonsynonymous SNV 0.004 1 24 hm5C_associated_SNPs_77457 0 0 0 0 2 MMRN1 chr4:90844423 5'GT 90844423 Upstream 100bp
chr2 101587504 101587504 1 + C T LGG 101587502 + 101587482 101587522 41 GGAGCTGGCTCTGGAAGACCCGCCATCCGAGGCCCTCCACT GGAGCTGGCTCTGGAAGACCCGTCATCCGAGGCCCTCCACT < 41bp 0.841504793134859 0.61516367139875 0.90260255 0.45231822 prediction 0.452682243472219 Functional Loss - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101587502 chr2:101587504 nonsynonymous SNV 0.043 0 23 hm5C_associated_SNPs_77458 0 0 1 0 2 NPAS2 chr2:101587452 3'AG 101587452 Downstream 53bp
chr2 101587504 101587504 1 + C T LGG 101587502 + 101587482 101587522 41 GGAGCTGGCTCTGGAAGACCCGCCATCCGAGGCCCTCCACT GGAGCTGGCTCTGGAAGACCCGTCATCCGAGGCCCTCCACT < 41bp 0.841504793134859 0.61516367139875 0.90260255 0.45231822 prediction 0.452682243472219 Functional Loss - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101587502 chr2:101587504 nonsynonymous SNV 0.043 0 23 hm5C_associated_SNPs_77458 0 0 1 0 2 NPAS2 chr2:101587536 5'GT 101587536 Upstream 33bp
chr1 170135712 170135712 1 + G A UCEC 170135709 + 170135689 170135729 41 GGATAGGAAGGGTCAGCAAACACGTCTTATTGCCTGTTTTC GGATAGGAAGGGTCAGCAAACACATCTTATTGCCTGTTTTC < 41bp 0.764425528390016 0.538085731284959 0.25472173 0.11778179 prediction 0.452679594210113 Functional Loss - METTL11B ENSG00000203740 CDS Human protein_coding chr1:170135709 chr1:170135712 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_77459 0 0 0 0 1 METTL11B chr1:170135643 3'AG 170135643 Downstream 70bp
chr10 118310653 118310653 1 + G T SARC 118310651 + 118310631 118310671 41 GTGAACTGTATCTGTGTGGACTGGAAAGGTGGCTCCCGAAC GTGAACTGTATCTGTGTGGACTTGAAAGGTGGCTCCCGAAC < 41bp 0.898847977118053 0.672510172712652 0.2597974 0.22617087 prediction 0.452675608810802 Functional Loss - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118310651 chr10:118310653 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_77461 0 0 0 0 2 PNLIP chr10:118310610 3'AG 118310610 Downstream 44bp
chr10 118310653 118310653 1 + G T SARC 118310651 + 118310631 118310671 41 GTGAACTGTATCTGTGTGGACTGGAAAGGTGGCTCCCGAAC GTGAACTGTATCTGTGTGGACTTGAAAGGTGGCTCCCGAAC < 41bp 0.898847977118053 0.672510172712652 0.2597974 0.22617087 prediction 0.452675608810802 Functional Loss - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118310651 chr10:118310653 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_77461 0 0 0 0 2 PNLIP chr10:118310744 5'GT 118310744 Upstream 92bp
chr1 89251812 89251812 1 + C T COAD 89251810 + 89251790 89251830 41 ATGTCTGTGCTGTTTTGAAGCTCGATAATACTGTGGTTGGC ATGTCTGTGCTGTTTTGAAGCTTGATAATACTGTGGTTGGC < 41bp 0.726335836532094 0.429590495258582 0.06447461 0.030573875 prediction 0.452671673064189 Functional Loss - PKN2 ENSG00000065243 CDS Human protein_coding chr1:89251810 chr1:89251812 synonymous SNV . 0 23 hm5C_associated_SNPs_77463 0 0 1 0 1 PKN2 chr1:89251787 3'AG 89251787 Downstream 26bp
chr1 202976622 202976622 1 + G T rs11558253 202976620 + 202976600 202976640 41 CGGGGGCCCGGCCCGCTAGGCAGGCCTCGCCCCGATACGGT CGGGGGCCCGGCCCGCTAGGCATGCCTCGCCCCGATACGGT < 41bp 0.726331825887656 0.376683572399579 0.81161445 0.11963737 prediction 0.452663651775311 Functional Loss - TMEM183A;TMEM183B ENSG00000163444 CDS Human protein_coding chr1:202976620 chr1:202976622 nonsynonymous SNV 0.902 0 23 hm5C_associated_SNPs_77464 0 0 0 0 1 TMEM183A;TMEM183B chr1:202976702 5'GT 202976702 Upstream 81bp
chr20 34130292 34130292 1 + C T UCEC 34130290 + 34130270 34130310 41 TGAGCTCTACGTGGACAAGTCGCGGGGAGATAAACTGAAGA TGAGCTCTACGTGGACAAGTCGTGGGGAGATAAACTGAAGA < 41bp 0.836252656789077 0.609922249549054 0.88512516 0.8561225 prediction 0.452660814480046 Functional Loss - ERGIC3 ENSG00000125991 CDS Human protein_coding chr20:34130290 chr20:34130292 nonsynonymous SNV 0.974 4 23 hm5C_associated_SNPs_77466 0 0 1 0 2 ERGIC3 chr20:34130262 3'AG 34130262 Downstream 31bp
chr20 34130292 34130292 1 + C T UCEC 34130290 + 34130270 34130310 41 TGAGCTCTACGTGGACAAGTCGCGGGGAGATAAACTGAAGA TGAGCTCTACGTGGACAAGTCGTGGGGAGATAAACTGAAGA < 41bp 0.836252656789077 0.609922249549054 0.88512516 0.8561225 prediction 0.452660814480046 Functional Loss - ERGIC3 ENSG00000125991 CDS Human protein_coding chr20:34130290 chr20:34130292 nonsynonymous SNV 0.974 4 23 hm5C_associated_SNPs_77466 0 0 1 0 2 ERGIC3 chr20:34130349 5'GT 34130349 Upstream 58bp
chr1 92764564 92764564 1 - C G rs555339441 92764565 - 92764545 92764585 41 CCCGAGGCCCCGCCTCCCTACGCGTAGCGCGGGGCGGGGCC CCCGAGGCCCCGCCTCCCTACCCGTAGCGCGGGGCGGGGCC < 41bp 0.864764262530051 0.638446152741936 0.13063115 0.029881418 prediction 0.45263621957623 Functional Loss - GLMN;RPAP2 ENSG00000122484 UTR5 Human protein_coding chr1:92764565 chr1:92764564 . . 0 22 hm5C_associated_SNPs_77470 0 0 0 0 1 GLMN chr1:92764482 5'GT 92764482 Upstream 83bp
chr9 91930206 91930206 1 + G T LUSC 91930203 + 91930183 91930223 41 GCTGGGTTCATTACATGATTCATGAGCCAGGTAAGCTATGC GCTGGGTTCATTACATGATTCATTAGCCAGGTAAGCTATGC < 41bp 0.726317892143622 0.354174103683535 0.14803755 0.050843447 prediction 0.452635784287243 Functional Loss - CKS2 ENSG00000123975 CDS Human protein_coding chr9:91930203 chr9:91930206 stopgain 1.000 1 24 hm5C_associated_SNPs_77471 0 0 1 0 1 CKS2 chr9:91930212 5'GT 91930212 Upstream 7bp
chr19 17581502 17581502 1 + G C LUSC 17581501 + 17581481 17581521 41 GCGCATCGTCTGCAAGACCGCGAGGCGAGACCTCTTGTGAG GCGCATCGTCTGCAAGACCGCCAGGCGAGACCTCTTGTGAG < 41bp 0.726317883682871 0.406382798980303 0.91300714 0.89319444 prediction 0.452635767365743 Functional Loss - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17581501 chr19:17581502 synonymous SNV . 0 22 hm5C_associated_SNPs_77472 0 0 1 0 1 SLC27A1 chr19:17581516 5'GT 17581516 Upstream 15bp
chr1 46977741 46977741 1 + C T SKCM 46977739 + 46977719 46977759 41 CCCAGGCAGCCTGACCATCACTCCTGTGGCCCCAGGGGGTG CCCAGGCAGCCTGACCATCACTTCTGTGGCCCCAGGGGGTG < 41bp 0.726316926854195 0.45885623940986 0.11600447 0.109005034 prediction 0.45263385370839 Functional Loss - DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46977739 chr1:46977741 nonsynonymous SNV 0.046 2 23 hm5C_associated_SNPs_77473 0 0 0 0 1 DMBX1 chr1:46977715 3'AG 46977715 Downstream 27bp
chr2 44545298 44545298 1 + C T rs72802996 44545296 + 44545276 44545316 41 CTCGAGTGCAGTGGCGTGATCTCGGCACACTGCAGCCTCTG CTCGAGTGCAGTGGCGTGATCTTGGCACACTGCAGCCTCTG < 41bp 0.726316334933858 0.496581183811492 0.6238257 0.48412457 prediction 0.452632669867716 Functional Loss - PREPL ENSG00000138079 CDS Human protein_coding chr2:44545296 chr2:44545298 synonymous SNV . 0 23 hm5C_associated_SNPs_77474 0 0 0 0 1 PREPL chr2:44545257 3'AG 44545257 Downstream 42bp
chr16 67662356 67662356 1 + G A BLCA 67662353 + 67662333 67662373 41 CACTGCGATAAGACCTTCCGCCAGAAGCAGCTTCTCGACAT CACTGCGATAAGACCTTCCGCCAAAAGCAGCTTCTCGACAT < 41bp 0.72631454746778 0.48630602626398 0.39836052 0.3663618 prediction 0.45262909493556 Functional Loss - CTCF ENSG00000102974 CDS Human protein_coding chr16:67662353 chr16:67662356 synonymous SNV . 0 24 hm5C_associated_SNPs_77475 0 0 1 0 1 CTCF chr16:67662455 5'GT 67662455 Upstream 100bp
chr19 18967817 18967817 1 + C T BLCA 18967815 + 18967795 18967835 41 AGTGCATGGTTCCCGTGGTCCTCGGGGCCAAGCAGGTGGGC AGTGCATGGTTCCCGTGGTCCTTGGGGCCAAGCAGGTGGGC < 41bp 0.726314237196881 0.451641127017328 0.25300312 0.14771694 prediction 0.452628474393762 Functional Loss - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18967815 chr19:18967817 synonymous SNV . 0 23 hm5C_associated_SNPs_77476 0 0 1 0 1 UPF1 chr19:18967829 5'GT 18967829 Upstream 13bp
chr19 18967816 18967816 1 + T C STAD 18967815 + 18967795 18967835 41 AGTGCATGGTTCCCGTGGTCCTCGGGGCCAAGCAGGTGGGC AGTGCATGGTTCCCGTGGTCCCCGGGGCCAAGCAGGTGGGC < 41bp 0.726314237196881 0.468087084160748 0.25300312 0.33960736 prediction 0.452628474393762 Functional Loss - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18967815 chr19:18967816 nonsynonymous SNV 0.977 5 22 hm5C_associated_SNPs_77477 0 0 1 0 1 UPF1 chr19:18967829 5'GT 18967829 Upstream 14bp
chr2 1457551 1457551 1 + G A UCEC 1457548 + 1457528 1457568 41 AGGACGGCTTCAGTCAGCCCCGAGGCTGGAACCCCGGCTTC AGGACGGCTTCAGTCAGCCCCGAAGCTGGAACCCCGGCTTC < 41bp 0.799704411430526 0.57339092066966 0.92580473 0.78281075 prediction 0.452626981521733 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1457548 chr2:1457551 nonsynonymous SNV 0.973 4 24 hm5C_associated_SNPs_77480 0 0 0 0 2 TPO chr2:1457466 3'AG 1457466 Downstream 86bp
chr2 1457551 1457551 1 + G A UCEC 1457548 + 1457528 1457568 41 AGGACGGCTTCAGTCAGCCCCGAGGCTGGAACCCCGGCTTC AGGACGGCTTCAGTCAGCCCCGAAGCTGGAACCCCGGCTTC < 41bp 0.799704411430526 0.57339092066966 0.92580473 0.78281075 prediction 0.452626981521733 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1457548 chr2:1457551 nonsynonymous SNV 0.973 4 24 hm5C_associated_SNPs_77480 0 0 0 0 2 TPO chr2:1457595 5'GT 1457595 Upstream 45bp
chr2 1418252 1418252 1 + G A READ 1418249 + 1418229 1418269 41 GAAGCCTTCTTCCCCTTCATCTCGAGAGGGAAAGAACTCCT GAAGCCTTCTTCCCCTTCATCTCAAGAGGGAAAGAACTCCT < 41bp 0.754523093947792 0.528209683543852 0.24843028 0.082820356 prediction 0.452626820807881 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1418249 chr2:1418252 synonymous SNV . 0 24 hm5C_associated_SNPs_77481 0 0 0 0 1 TPO chr2:1418274 5'GT 1418274 Upstream 23bp
chr11 118242324 118242324 1 + A C rs145949976 118242323 + 118242303 118242343 41 TCTCTCTGCTGATCGAGATGCAGGAGAGAGGCACATTTTTT TCTCTCTGCTGATCGAGATGCCGGAGAGAGGCACATTTTTT < 41bp 0.726305596766798 0.466086296405414 0.5866529 0.36220694 prediction 0.452611193533596 Functional Loss - UBE4A ENSG00000110344 CDS Human protein_coding chr11:118242323 chr11:118242324 synonymous SNV . 0 22 hm5C_associated_SNPs_77487 0 0 1 0 2 UBE4A chr11:118242229 3'AG 118242229 Downstream 96bp
chr11 118242324 118242324 1 + A C rs145949976 118242323 + 118242303 118242343 41 TCTCTCTGCTGATCGAGATGCAGGAGAGAGGCACATTTTTT TCTCTCTGCTGATCGAGATGCCGGAGAGAGGCACATTTTTT < 41bp 0.726305596766798 0.466086296405414 0.5866529 0.36220694 prediction 0.452611193533596 Functional Loss - UBE4A ENSG00000110344 CDS Human protein_coding chr11:118242323 chr11:118242324 synonymous SNV . 0 22 hm5C_associated_SNPs_77487 0 0 1 0 2 UBE4A chr11:118242381 5'GT 118242381 Upstream 58bp
chr9 124074720 124074720 1 + G A UCEC 124074717 + 124074697 124074737 41 CAACGAGCGGAGTGGCCGGGCCCGAGTGCACGTGTCTGAGG CAACGAGCGGAGTGGCCGGGCCCAAGTGCACGTGTCTGAGG < 41bp 0.726304301009446 0.497895287928783 0.12061688 0.12010455 prediction 0.452608602018893 Functional Loss - GSN ENSG00000148180 CDS Human protein_coding chr9:124074717 chr9:124074720 nonsynonymous SNV 0.988 0 24 hm5C_associated_SNPs_77488 0 0 1 0 1 GSN chr9:124074766 5'GT 124074766 Upstream 47bp
chr15 101562793 101562793 1 + G A rs11247253 101562790 + 101562770 101562810 41 GAGCTCCAGAGGCCGGCTGGCTCGAGAGCCAAGGTCAAGGA GAGCTCCAGAGGCCGGCTGGCTCAAGAGCCAAGGTCAAGGA < 41bp 0.750413441632341 0.524110030280682 0.102296144 0.20125923 prediction 0.452606822703317 Functional Loss - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101562790 chr15:101562793 synonymous SNV . 0 24 hm5C_associated_SNPs_77491 0 0 0 0 1 LRRK1 chr15:101562802 5'GT 101562802 Upstream 10bp
chr17 61613064 61613064 1 + G A STAD 61613061 + 61613041 61613081 41 GATTGGGCTATTGAAGACAGCGCGGCTGCTGCGGCTGGTGC GATTGGGCTATTGAAGACAGCGCAGCTGCTGCGGCTGGTGC < 41bp 0.726303012532715 0.487482407857756 0.29021353 0.09821144 prediction 0.45260602506543 Functional Loss - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61613061 chr17:61613064 nonsynonymous SNV 0.812 5 24 hm5C_associated_SNPs_77492 0 0 0 0 1 KCNH6 chr17:61613030 3'AG 61613030 Downstream 35bp
chr8 92201794 92201794 1 + A C rs182104008 92201793 + 92201773 92201813 41 ATTCTACTGTGAGGGAAACCCACTGTTCCTGCAGCAGCCAG ATTCTACTGTGAGGGAAACCCCCTGTTCCTGCAGCAGCCAG < 41bp 0.726300369813645 0.461153203120527 0.90050167 0.08998975 prediction 0.452600739627289 Functional Loss - LRRC69 ENSG00000214954 CDS Human protein_coding chr8:92201793 chr8:92201794 synonymous SNV . 0 22 hm5C_associated_SNPs_77495 0 0 0 0 2 LRRC69 chr8:92201750 3'AG 92201750 Downstream 45bp
chr8 92201794 92201794 1 + A C rs182104008 92201793 + 92201773 92201813 41 ATTCTACTGTGAGGGAAACCCACTGTTCCTGCAGCAGCCAG ATTCTACTGTGAGGGAAACCCCCTGTTCCTGCAGCAGCCAG < 41bp 0.726300369813645 0.461153203120527 0.90050167 0.08998975 prediction 0.452600739627289 Functional Loss - LRRC69 ENSG00000214954 CDS Human protein_coding chr8:92201793 chr8:92201794 synonymous SNV . 0 22 hm5C_associated_SNPs_77495 0 0 0 0 2 LRRC69 chr8:92201851 5'GT 92201851 Upstream 58bp
chrX 55784683 55784683 1 + T C UCEC 55784682 + 55784662 55784702 41 TCCGCCCCCGCCCTCAGCTTCTGCAGCTACTCTGATCAACA TCCGCCCCCGCCCTCAGCTTCCGCAGCTACTCTGATCAACA < 41bp 0.726293619306912 0.466593754427476 0.16977003 0.121381134 prediction 0.452587238613824 Functional Loss - RRAGB ENSG00000083750 CDS Human protein_coding chrX:55784682 chrX:55784683 synonymous SNV . 0 22 hm5C_associated_SNPs_77497 0 0 1 0 1 RRAGB chrX:55784679 3'AG 55784679 Downstream 5bp
chrX 9907344 9907344 1 + G A SKCM 9907341 + 9907321 9907361 41 TGATCAAGATGAAGGACCTGCAGGAGCAGCAGGAGCACGAA TGATCAAGATGAAGGACCTGCAGAAGCAGCAGGAGCACGAA < 41bp 0.771624670935967 0.545331710478492 0.8441695 0.34667718 prediction 0.45258592091495 Functional Loss - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9907341 chrX:9907344 nonsynonymous SNV 0.906 0 24 hm5C_associated_SNPs_77498 0 0 0 0 1 SHROOM2 chrX:9907406 5'GT 9907406 Upstream 63bp
chr2 102493513 102493513 1 + G T GBM 102493511 + 102493491 102493531 41 AGTGGCCTGATGCTGCTGGACAGAAGTGGCCAAGGGAAGGT AGTGGCCTGATGCTGCTGGACATAAGTGGCCAAGGGAAGGT < 41bp 0.726290738316007 0.406009144885426 0.36933476 0.20529467 prediction 0.452581476632014 Functional Loss - MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102493511 chr2:102493513 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_77499 0 0 1 0 2 MAP4K4 chr2:102493465 3'AG 102493465 Downstream 49bp
chr2 102493513 102493513 1 + G T GBM 102493511 + 102493491 102493531 41 AGTGGCCTGATGCTGCTGGACAGAAGTGGCCAAGGGAAGGT AGTGGCCTGATGCTGCTGGACATAAGTGGCCAAGGGAAGGT < 41bp 0.726290738316007 0.406009144885426 0.36933476 0.20529467 prediction 0.452581476632014 Functional Loss - MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102493511 chr2:102493513 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_77499 0 0 1 0 2 MAP4K4 chr2:102493608 5'GT 102493608 Upstream 96bp
chr5 167891893 167891893 1 + G A COAD 167891890 + 167891870 167891910 41 AGCTGGAACAAGCCAAGAGCCACGGGGAGAAGGAGCTGCCA AGCTGGAACAAGCCAAGAGCCACAGGGAGAAGGAGCTGCCA < 41bp 0.756253987295758 0.529965087195563 0.43365502 0.39169157 prediction 0.452577800200389 Functional Loss - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167891890 chr5:167891893 nonsynonymous SNV 0.985 4 24 hm5C_associated_SNPs_77500 0 0 1 0 1 WWC1 chr5:167891967 5'GT 167891967 Upstream 75bp
chr16 3085429 3085429 1 + G A UCEC 3085426 + 3085406 3085446 41 AGCACAAAGGGGAAGAAGCCCTCGTCGCCGCTGGGAGAGGC AGCACAAAGGGGAAGAAGCCCTCATCGCCGCTGGGAGAGGC < 41bp 0.75561959491051 0.529335761123099 0.09729838 0.079717636 prediction 0.452567667574822 Functional Loss - BICDL2 ENSG00000162069 CDS Human protein_coding chr16:3085426 chr16:3085429 synonymous SNV . 0 24 hm5C_associated_SNPs_77502 0 0 0 0 1 BICDL2 chr16:3085339 3'AG 3085339 Downstream 91bp
chr9 116186457 116186457 1 + G A COAD 116186454 + 116186434 116186474 41 TGTCCCCTTCAGACTTTTGCCAGGTGGAAAGCAAACCATGC TGTCCCCTTCAGACTTTTGCCAGATGGAAAGCAAACCATGC < 41bp 0.726281201389606 0.491750831465312 0.92236584 0.8846649 prediction 0.452562402779211 Functional Loss - C9orf43 ENSG00000157653 CDS Human protein_coding chr9:116186454 chr9:116186457 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_77503 0 0 0 0 1 C9orf43 chr9:116186446 3'AG 116186446 Downstream 12bp
chr2 27666027 27666027 1 + T C rs151284588 27666026 + 27666006 27666046 41 CCTTCTTGCTGTGTCACTCACTGTGGCCAACGGTGGCCGCC CCTTCTTGCTGTGTCACTCACCGTGGCCAACGGTGGCCGCC < 41bp 0.796599029764112 0.570320253184882 0.33685374 0.3898185 prediction 0.452557553158459 Functional Loss - KRTCAP3 ENSG00000157992 CDS Human protein_coding chr2:27666026 chr2:27666027 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_77504 0 0 0 0 1 KRTCAP3 chr2:27665941 3'AG 27665941 Downstream 87bp
chr19 1271983 1271983 1 + G A HNSC 1271980 + 1271960 1272000 41 AACGTTTGTCTGTCTTGCAGCCGGAGTCAGAGTGGTGGCTA AACGTTTGTCTGTCTTGCAGCCGAAGTCAGAGTGGTGGCTA < 41bp 0.784412691319188 0.558133985643315 0.79495645 0.20235804 prediction 0.452557411351746 Functional Loss - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1271980 chr19:1271983 synonymous SNV . 0 24 hm5C_associated_SNPs_77505 0 0 1 4 2 CIRBP chr19:1271980 3'AG 1271980 Downstream 4bp
chr19 1271983 1271983 1 + G A HNSC 1271980 + 1271960 1272000 41 AACGTTTGTCTGTCTTGCAGCCGGAGTCAGAGTGGTGGCTA AACGTTTGTCTGTCTTGCAGCCGAAGTCAGAGTGGTGGCTA < 41bp 0.784412691319188 0.558133985643315 0.79495645 0.20235804 prediction 0.452557411351746 Functional Loss - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1271980 chr19:1271983 synonymous SNV . 0 24 hm5C_associated_SNPs_77505 0 0 1 4 2 CIRBP chr19:1272050 5'GT 1272050 Upstream 68bp
chr5 56526749 56526749 1 + A T SKCM 56526745 + 56526725 56526765 41 GTTATGATGTGAACCGTCGACGACACAACTCTTCAGATGGC GTTATGATGTGAACCGTCGACGACTCAACTCTTCAGATGGC < 41bp 0.726273465901908 0.392873540334248 0.25826108 0.12710953 prediction 0.452546931803815 Functional Loss - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56526745 chr5:56526749 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_77510 0 0 1 2 1 GPBP1 chr5:56526796 5'GT 56526796 Upstream 48bp
chrX 2778090 2778090 1 + C T UCEC 2778088 + 2778068 2778108 41 GTCCAAGCGGGGGAAGCACGCGCGTCTCCTGGTCACACAGT GTCCAAGCGGGGGAAGCACGCGTGTCTCCTGGTCACACAGT < 41bp 0.726272775871685 0.471347305539451 0.37891388 0.44297642 prediction 0.452545551743371 Functional Loss - GYG2 ENSG00000056998 CDS Human protein_coding chrX:2778088 chrX:2778090 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_77513 0 0 0 0 1 GYG2 chrX:2778106 5'GT 2778106 Upstream 17bp
chr3 10283890 10283890 1 + G T LUAD 10283888 + 10283868 10283908 41 TACAAAGAGGAAAAAGTGGACAGCATTGAGCTCTTTGGCCC TACAAAGAGGAAAAAGTGGACATCATTGAGCTCTTTGGCCC < 41bp 0.726271911910406 0.401973307408106 0.6504374 0.6307539 prediction 0.452543823820811 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10283888 chr3:10283890 nonsynonymous SNV 0.873 3 23 hm5C_associated_SNPs_77514 0 0 1 0 1 IRAK2 chr3:10283800 3'AG 10283800 Downstream 91bp
chr19 44037654 44037654 1 + G A rs2599460 44037651 + 44037631 44037671 41 GAGGAGCCGGAAGCCCCGCCCCCGGGGAGGGGCCGTCCTGC GAGGAGCCGGAAGCCCCGCCCCCAGGGAGGGGCCGTCCTGC < 41bp 0.782610502960071 0.556339852616952 0.6918075 0.32308394 prediction 0.452541300686239 Functional Loss - ZNF575 ENSG00000176472 UTR5 Human protein_coding chr19:44037651 chr19:44037654 . . 0 24 hm5C_associated_SNPs_77515 0 0 0 0 1 ZNF575 chr19:44037673 5'GT 44037673 Upstream 20bp
chr9 71840303 71840303 1 + G A UCEC 71840300 + 71840280 71840320 41 CAACTAAAGATGGCAACCTTCACGAAGGAGACATAATTCTC CAACTAAAGATGGCAACCTTCACAAAGGAGACATAATTCTC < 41bp 0.726263240912119 0.498411367799937 0.28617823 0.17558557 prediction 0.452526481824238 Functional Loss - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71840300 chr9:71840303 nonsynonymous SNV 0.991 1 24 hm5C_associated_SNPs_77519 0 0 0 0 1 TJP2 chr9:71840323 5'GT 71840323 Upstream 21bp
chr9 71840302 71840302 1 + C T UCEC 71840300 + 71840280 71840320 41 CAACTAAAGATGGCAACCTTCACGAAGGAGACATAATTCTC CAACTAAAGATGGCAACCTTCATGAAGGAGACATAATTCTC < 41bp 0.726263240912119 0.435433525560312 0.28617823 0.23133492 prediction 0.452526481824238 Functional Loss - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71840300 chr9:71840302 synonymous SNV . 0 23 hm5C_associated_SNPs_77520 0 0 0 0 1 TJP2 chr9:71840323 5'GT 71840323 Upstream 22bp
chr11 45948318 45948318 1 + G T STAD 45948316 + 45948296 45948336 41 ACCCCTGCTTTGAGTTCCGGCAGCAGCAGCTCACTGTGCAC ACCCCTGCTTTGAGTTCCGGCATCAGCAGCTCACTGTGCAC < 41bp 0.726257158099272 0.370390547001117 0.34900686 0.0880838 prediction 0.452514316198545 Functional Loss - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45948316 chr11:45948318 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_77521 0 0 0 0 1 LARGE2 chr11:45948262 3'AG 45948262 Downstream 57bp
chr17 11145377 11145377 1 + G T UCEC 11145375 + 11145355 11145395 41 CCACGGGAGATGAACATCCACAGGTGAGAGCGCCGCGTGCC CCACGGGAGATGAACATCCACATGTGAGAGCGCCGCGTGCC < 41bp 0.726250929494954 0.375215566875323 0.90422404 0.4423426 prediction 0.452501858989907 Functional Loss - SHISA6 ENSG00000188803 CDS Human protein_coding chr17:11145375 chr17:11145377 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_77524 0 0 0 0 1 SHISA6 chr17:11145377 5'GT 11145377 Upstream 1bp
chr1 202977908 202977908 1 + T C rs200394167 202977907 + 202977887 202977927 41 AGCATCCATGAGAGAACTGTCTCCAGAAAAAAGAAAAGCAA AGCATCCATGAGAGAACTGTCCCCAGAAAAAAGAAAAGCAA < 41bp 0.826884040676066 0.600633995837647 0.9407394 0.23900339 prediction 0.452500089676839 Functional Loss - TMEM183A;TMEM183B ENSG00000163444 CDS Human protein_coding chr1:202977907 chr1:202977908 nonsynonymous SNV 0.990 2 22 hm5C_associated_SNPs_77525 0 0 0 0 1 TMEM183A;TMEM183B chr1:202977938 5'GT 202977938 Upstream 31bp
chr8 23147951 23147951 1 + C T UCEC 23147949 + 23147929 23147969 41 GAGGATGGCCCCAGCAGCTGCTCGGAGGACGATTACAGTGA GAGGATGGCCCCAGCAGCTGCTTGGAGGACGATTACAGTGA < 41bp 0.815894429352753 0.589646258034594 0.81691223 0.28180537 prediction 0.452496342636317 Functional Loss - R3HCC1 ENSG00000104679 CDS Human protein_coding chr8:23147949 chr8:23147951 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_77526 0 0 1 0 1 R3HCC1 chr8:23147982 5'GT 23147982 Upstream 32bp
chr1 223936755 223936755 1 + G A UCEC 223936752 + 223936732 223936772 41 TGTTTGCAGATCACCAGCGCCGCGGACTCGGAGGCCATCAC TGTTTGCAGATCACCAGCGCCGCAGACTCGGAGGCCATCAC < 41bp 0.764375876759497 0.538127942250565 0.88978827 0.34736782 prediction 0.452495869017862 Functional Loss - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223936752 chr1:223936755 synonymous SNV . 0 24 hm5C_associated_SNPs_77527 0 0 1 0 2 CAPN2 chr1:223936741 3'AG 223936741 Downstream 15bp
chr1 223936755 223936755 1 + G A UCEC 223936752 + 223936732 223936772 41 TGTTTGCAGATCACCAGCGCCGCGGACTCGGAGGCCATCAC TGTTTGCAGATCACCAGCGCCGCAGACTCGGAGGCCATCAC < 41bp 0.764375876759497 0.538127942250565 0.88978827 0.34736782 prediction 0.452495869017862 Functional Loss - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223936752 chr1:223936755 synonymous SNV . 0 24 hm5C_associated_SNPs_77527 0 0 1 0 2 CAPN2 chr1:223936824 5'GT 223936824 Upstream 70bp
chr12 3131073 3131073 1 + G A UCEC 3131070 + 3131050 3131090 41 CAAGCTACAGCGACCCCTACCTCGAAGCCGTGGACATCCGC CAAGCTACAGCGACCCCTACCTCAAAGCCGTGGACATCCGC < 41bp 0.769422053199323 0.543176858606361 0.53512144 0.06306949 prediction 0.452490389185924 Functional Loss - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3131070 chr12:3131073 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_77530 0 0 0 0 1 TEAD4 chr12:3131010 3'AG 3131010 Downstream 64bp
chr10 22690181 22690181 1 + A C COAD 22690177 + 22690157 22690197 41 ATGATGCTCCTCCCAATATTCTGAAACATGTGGTTGGACAG ATGATGCTCCTCCCAATATTCTGACACATGTGGTTGGACAG < 41bp 0.726245066504016 0.300038364751681 0.20088571 0.20226231 prediction 0.452490133008033 Functional Loss - SPAG6 ENSG00000077327 CDS Human protein_coding chr10:22690177 chr10:22690181 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_77531 0 0 0 0 1 SPAG6 chr10:22690206 5'GT 22690206 Upstream 26bp
chr17 48703700 48703700 1 + G C LUSC 48703699 + 48703679 48703719 41 AGGAGGAGCCCCCATCCCCACGGGACCTGAAGAAGTGCTAC AGGAGGAGCCCCCATCCCCACCGGACCTGAAGAAGTGCTAC < 41bp 0.815040622446368 0.588798917816844 0.8809303 0.5556467 prediction 0.452483409259049 Functional Loss - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48703699 chr17:48703700 nonsynonymous SNV 0.991 3 22 hm5C_associated_SNPs_77532 0 0 0 0 1 CACNA1G chr17:48703681 3'AG 48703681 Downstream 20bp
chr4 2065543 2065543 1 + C T PRAD 2065541 + 2065521 2065561 41 CGTGGTGGGCATTGTGGCTGCACGGGCCCACGAGGAGGACA CGTGGTGGGCATTGTGGCTGCATGGGCCCACGAGGAGGACA < 41bp 0.775989650558596 0.549758321992182 0.8725179 0.8977584 prediction 0.452462657132828 Functional Loss - NAT8L ENSG00000185818 CDS Human protein_coding chr4:2065541 chr4:2065543 nonsynonymous SNV 0.090 3 23 hm5C_associated_SNPs_77537 0 0 1 0 1 NAT8L chr4:2065487 3'AG 2065487 Downstream 57bp
chr5 177547638 177547638 1 + G A UCEC 177547635 + 177547615 177547655 41 AGGAAATGGGAGCCGTGCTGCCCGAGACCTGTGAGGAGCTC AGGAAATGGGAGCCGTGCTGCCCAAGACCTGTGAGGAGCTC < 41bp 0.726229883690593 0.486132467060925 0.24909875 0.11154875 prediction 0.452459767381185 Functional Loss - N4BP3 ENSG00000145911 CDS Human protein_coding chr5:177547635 chr5:177547638 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_77538 0 0 0 0 1 N4BP3 chr5:177547700 5'GT 177547700 Upstream 63bp
chr20 47845307 47845307 1 + C T PRAD 47845305 + 47845285 47845325 41 AGCGTCTGATTTATAAACCCCGCCAGGCTCCAGTCACCCGC AGCGTCTGATTTATAAACCCCGTCAGGCTCCAGTCACCCGC < 41bp 0.862505661932325 0.636278855428833 0.46677378 0.24575514 prediction 0.452453613006984 Functional Loss - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47845305 chr20:47845307 synonymous SNV . 0 23 hm5C_associated_SNPs_77540 0 0 1 0 1 DDX27 chr20:47845252 3'AG 47845252 Downstream 56bp
chr8 125109564 125109564 1 + G T LUAD 125109561 + 125109541 125109581 41 TCCCAAGGATATGCCTCAACCTGGACCTCCTGTTGACATCT TCCCAAGGATATGCCTCAACCTGTACCTCCTGTTGACATCT < 41bp 0.72621330856271 0.34754233948526 0.69909084 0.27469873 prediction 0.452426617125421 Functional Loss - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:125109561 chr8:125109564 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_77544 0 0 0 0 1 FER1L6 chr8:125109512 3'AG 125109512 Downstream 53bp
chr2 155306961 155306961 1 + C T COAD 155306959 + 155306939 155306979 41 ATGTTAACAGTAACCAATGTCTCGATGAACCTTCTGAAGAA ATGTTAACAGTAACCAATGTCTTGATGAACCTTCTGAAGAA < 41bp 0.726211715112323 0.444602789634275 0.92535603 0.09147853 prediction 0.452423430224645 Functional Loss - GALNT13 ENSG00000144278 CDS Human protein_coding chr2:155306959 chr2:155306961 synonymous SNV . 0 23 hm5C_associated_SNPs_77545 0 0 0 0 1 GALNT13 chr2:155306923 3'AG 155306923 Downstream 39bp
chr2 75186008 75186008 1 + G A UCEC 75186005 + 75185985 75186025 41 GACAGGAAGCCATCTTCATTCTGGCACGAGCCGCGGTGCGC GACAGGAAGCCATCTTCATTCTGACACGAGCCGCGGTGCGC < 41bp 0.745484259679205 0.519276456380318 0.32461107 0.11991942 prediction 0.452415606597774 Functional Loss - POLE4 ENSG00000115350 CDS Human protein_coding chr2:75186005 chr2:75186008 nonsynonymous SNV 0.986 1 24 hm5C_associated_SNPs_77547 0 0 1 0 1 POLE4 chr2:75186019 5'GT 75186019 Upstream 12bp
chr1 9781259 9781259 1 + C T STAD 9781257 + 9781237 9781277 41 AGCTGCTAGACTTCAGCTTCCCCGATTGCCACGTAGGCTCC AGCTGCTAGACTTCAGCTTCCCTGATTGCCACGTAGGCTCC < 41bp 0.726194974000755 0.443293287241241 0.13384491 0.16180378 prediction 0.45238994800151 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9781257 chr1:9781259 synonymous SNV . 0 23 hm5C_associated_SNPs_77552 0 0 0 0 2 PIK3CD chr1:9781185 3'AG 9781185 Downstream 75bp
chr1 9781259 9781259 1 + C T STAD 9781257 + 9781237 9781277 41 AGCTGCTAGACTTCAGCTTCCCCGATTGCCACGTAGGCTCC AGCTGCTAGACTTCAGCTTCCCTGATTGCCACGTAGGCTCC < 41bp 0.726194974000755 0.443293287241241 0.13384491 0.16180378 prediction 0.45238994800151 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9781257 chr1:9781259 synonymous SNV . 0 23 hm5C_associated_SNPs_77552 0 0 0 0 2 PIK3CD chr1:9781306 5'GT 9781306 Upstream 48bp
chr8 97311963 97311963 1 + G A HNSC 97311960 + 97311940 97311980 41 CTCCCCAATTTTGCCGAGTGCTGGTGGGATCAAGTCATTCT CTCCCCAATTTTGCCGAGTGCTGATGGGATCAAGTCATTCT < 41bp 0.72619282868162 0.489232133657724 0.17351207 0.09083733 prediction 0.45238565736324 Functional Loss - PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97311960 chr8:97311963 stopgain 1.000 1 24 hm5C_associated_SNPs_77553 0 0 1 0 1 PTDSS1 chr8:97311922 3'AG 97311922 Downstream 42bp
chr8 54866704 54866704 1 + C T UCEC 54866701 + 54866681 54866721 41 TGACAAATTAATGGTCACTCCAGCAGGAAGGAATGCATTCC TGACAAATTAATGGTCACTCCAGTAGGAAGGAATGCATTCC < 41bp 0.739328106676225 0.513138251206561 0.1837546 0.18703443 prediction 0.452379710939327 Functional Loss - RGS20 ENSG00000147509 CDS Human protein_coding chr8:54866701 chr8:54866704 nonsynonymous SNV 0.972 1 24 hm5C_associated_SNPs_77555 0 0 0 0 1 RGS20 chr8:54866636 3'AG 54866636 Downstream 69bp
chr1 12919600 12919600 1 + G C HNSC 12919596 + 12919576 12919616 41 CGGGATGTTGATGAGAATTTCTGGGCCAGATGGCCTGGAGC CGGGATGTTGATGAGAATTTCTGGCCCAGATGGCCTGGAGC < 41bp 0.866047822501573 0.639858324733138 0.8722186 0.56849813 prediction 0.45237899553687 Functional Loss - PRAMEF2 ENSG00000120952 CDS Human protein_coding chr1:12919596 chr1:12919600 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_77556 0 0 0 0 1 PRAMEF2 chr1:12919548 3'AG 12919548 Downstream 53bp
chr1 171300834 171300834 1 + A C UCEC 171300830 + 171300810 171300850 41 TAGTCAAGAGTACAAGATCCCAGAAGGCTTTCAGGGCAAAC TAGTCAAGAGTACAAGATCCCAGACGGCTTTCAGGGCAAAC < 41bp 0.726189281834137 0.322538732083655 0.26333773 0.20551857 prediction 0.452378563668274 Functional Loss - FMO4 ENSG00000076258 CDS Human protein_coding chr1:171300830 chr1:171300834 nonsynonymous SNV 0.800 0 25 hm5C_associated_SNPs_77557 0 0 0 0 2 FMO4 chr1:171300779 3'AG 171300779 Downstream 56bp
chr1 171300834 171300834 1 + A C UCEC 171300830 + 171300810 171300850 41 TAGTCAAGAGTACAAGATCCCAGAAGGCTTTCAGGGCAAAC TAGTCAAGAGTACAAGATCCCAGACGGCTTTCAGGGCAAAC < 41bp 0.726189281834137 0.322538732083655 0.26333773 0.20551857 prediction 0.452378563668274 Functional Loss - FMO4 ENSG00000076258 CDS Human protein_coding chr1:171300830 chr1:171300834 nonsynonymous SNV 0.800 0 25 hm5C_associated_SNPs_77557 0 0 0 0 2 FMO4 chr1:171300921 5'GT 171300921 Upstream 88bp
chr1 171300832 171300832 1 + G T UCEC 171300830 + 171300810 171300850 41 TAGTCAAGAGTACAAGATCCCAGAAGGCTTTCAGGGCAAAC TAGTCAAGAGTACAAGATCCCATAAGGCTTTCAGGGCAAAC < 41bp 0.726189281834137 0.38340224131764 0.26333773 0.13259056 prediction 0.452378563668274 Functional Loss - FMO4 ENSG00000076258 CDS Human protein_coding chr1:171300830 chr1:171300832 stopgain 0.958 1 23 hm5C_associated_SNPs_77558 0 0 0 0 2 FMO4 chr1:171300779 3'AG 171300779 Downstream 54bp
chr1 171300832 171300832 1 + G T UCEC 171300830 + 171300810 171300850 41 TAGTCAAGAGTACAAGATCCCAGAAGGCTTTCAGGGCAAAC TAGTCAAGAGTACAAGATCCCATAAGGCTTTCAGGGCAAAC < 41bp 0.726189281834137 0.38340224131764 0.26333773 0.13259056 prediction 0.452378563668274 Functional Loss - FMO4 ENSG00000076258 CDS Human protein_coding chr1:171300830 chr1:171300832 stopgain 0.958 1 23 hm5C_associated_SNPs_77558 0 0 0 0 2 FMO4 chr1:171300921 5'GT 171300921 Upstream 90bp
chr6 33179753 33179753 1 + A T HNSC 33179749 + 33179729 33179769 41 AGTGAAAAGCAGTACACCATCTACATCGCACCTGGAGGCGG AGTGAAAAGCAGTACACCATCTACTTCGCACCTGGAGGCGG < 41bp 0.846092061649148 0.619910313630193 0.36716795 0.078786045 prediction 0.45236349603791 Functional Loss - RING1 ENSG00000204227 CDS Human protein_coding chr6:33179749 chr6:33179753 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_77562 0 0 1 0 1 RING1 chr6:33179779 5'GT 33179779 Upstream 27bp
chr21 45089829 45089829 1 + G T UCEC 45089827 + 45089807 45089847 41 TCTTCTACTGCATGTGGGTGCAGGATGAACCCCTTCTACAG TCTTCTACTGCATGTGGGTGCATGATGAACCCCTTCTACAG < 41bp 0.907120903468701 0.680944220643486 0.90340495 0.39895582 prediction 0.452353365650429 Functional Loss - RRP1B ENSG00000160208 CDS Human protein_coding chr21:45089827 chr21:45089829 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_77565 0 0 1 0 2 RRP1B chr21:45089765 3'AG 45089765 Downstream 65bp
chr21 45089829 45089829 1 + G T UCEC 45089827 + 45089807 45089847 41 TCTTCTACTGCATGTGGGTGCAGGATGAACCCCTTCTACAG TCTTCTACTGCATGTGGGTGCATGATGAACCCCTTCTACAG < 41bp 0.907120903468701 0.680944220643486 0.90340495 0.39895582 prediction 0.452353365650429 Functional Loss - RRP1B ENSG00000160208 CDS Human protein_coding chr21:45089827 chr21:45089829 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_77565 0 0 1 0 2 RRP1B chr21:45089847 5'GT 45089847 Upstream 19bp
chr3 45038709 45038709 1 + C T STAD 45038707 + 45038687 45038727 41 AAAGACCCTCTGCATTAGTCCTCGGGAGCACTGCTGGGTTC AAAGACCCTCTGCATTAGTCCTTGGGAGCACTGCTGGGTTC < 41bp 0.852360037991112 0.626186087225019 0.19999775 0.15725261 prediction 0.452347901532187 Functional Loss - EXOSC7 ENSG00000075914 CDS Human protein_coding chr3:45038707 chr3:45038709 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_77567 0 0 1 0 1 EXOSC7 chr3:45038744 5'GT 45038744 Upstream 36bp
chr15 50786321 50786321 1 + G T CESC 50786318 + 50786298 50786338 41 GCAGAAGAATTTGGTATAATCATGAAAGCCCTGTGGACAGG GCAGAAGAATTTGGTATAATCATTAAAGCCCTGTGGACAGG < 41bp 0.726173658561388 0.346773667401652 0.1964578 0.08402866 prediction 0.452347317122776 Functional Loss - USP8 ENSG00000138592 CDS Human protein_coding chr15:50786318 chr15:50786321 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_77568 0 0 1 0 1 USP8 chr15:50786267 3'AG 50786267 Downstream 55bp
chr11 63964764 63964764 1 + G A LUAD 63964761 + 63964741 63964781 41 AGGCACTGAAAGAAAAAGAGCTGGGGAACGATGCCTACAAG AGGCACTGAAAGAAAAAGAGCTGAGGAACGATGCCTACAAG < 41bp 0.749419884274064 0.523249872549932 0.32831746 0.3087693 prediction 0.452340023448265 Functional Loss - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63964761 chr11:63964764 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_77572 0 0 1 0 1 STIP1 chr11:63964743 3'AG 63964743 Downstream 22bp
chr2 177017375 177017375 1 + G A UCEC 177017372 + 177017352 177017392 41 CGGTGGGGAACCCAAGCGGTCCCGAACGGCCTACACCCGGC CGGTGGGGAACCCAAGCGGTCCCAAACGGCCTACACCCGGC < 41bp 0.726168005414617 0.496364990158239 0.31816486 0.107735574 prediction 0.452336010829234 Functional Loss - HOXD4 ENSG00000170166 CDS Human protein_coding chr2:177017372 chr2:177017375 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_77573 0 0 1 0 1 HOXD4 chr2:177017336 3'AG 177017336 Downstream 40bp
chr17 7984079 7984079 1 - C T SKCM 7984082 - 7984062 7984102 41 ACAGGTGGAATGGCTATATTCCGGGATTCCCAATTCTCATC ACAGGTGGAATGGCTATATTCCGAGATTCCCAATTCTCATC < 41bp 0.794975507085385 0.568813308215414 0.88855815 0.4988341 prediction 0.452324397739943 Functional Loss - ALOX12B ENSG00000179477 CDS Human protein_coding chr17:7984082 chr17:7984079 nonsynonymous SNV 0.788 5 24 hm5C_associated_SNPs_77577 0 0 0 0 1 ALOX12B chr17:7984098 3'AG 7984098 Downstream 20bp
chr17 42824479 42824479 1 + C T HNSC 42824477 + 42824457 42824497 41 CAAGGATGGAGAGCCAAGCCCACGATCAGCTGCCCACACCA CAAGGATGGAGAGCCAAGCCCATGATCAGCTGCCCACACCA < 41bp 0.829191705816139 0.603035352459303 0.24602368 0.11943337 prediction 0.452312706713671 Functional Loss - DBF4B ENSG00000161692 CDS Human protein_coding chr17:42824477 chr17:42824479 stopgain 0.000 0 23 hm5C_associated_SNPs_77585 0 0 1 0 2 DBF4B chr17:42824451 3'AG 42824451 Downstream 29bp
chr17 42824479 42824479 1 + C T HNSC 42824477 + 42824457 42824497 41 CAAGGATGGAGAGCCAAGCCCACGATCAGCTGCCCACACCA CAAGGATGGAGAGCCAAGCCCATGATCAGCTGCCCACACCA < 41bp 0.829191705816139 0.603035352459303 0.24602368 0.11943337 prediction 0.452312706713671 Functional Loss - DBF4B ENSG00000161692 CDS Human protein_coding chr17:42824477 chr17:42824479 stopgain 0.000 0 23 hm5C_associated_SNPs_77585 0 0 1 0 2 DBF4B chr17:42824559 5'GT 42824559 Upstream 81bp
chr9 135462789 135462789 1 + G A rs143453765 135462786 + 135462766 135462806 41 GTGCGCCTGAAAAAGCCACGCAAGGCGCGCACGGCCTTCAC GTGCGCCTGAAAAAGCCACGCAAAGCGCGCACGGCCTTCAC < 41bp 0.770288563091903 0.544138029171428 0.3324713 0.133757 prediction 0.452301067840951 Functional Loss - BARHL1 ENSG00000125492 CDS Human protein_coding chr9:135462786 chr9:135462789 synonymous SNV . 0 24 hm5C_associated_SNPs_77588 0 0 0 0 1 BARHL1 chr9:135462716 3'AG 135462716 Downstream 74bp
chr5 176733460 176733460 1 + G A ESCA 176733457 + 176733437 176733477 41 AAAACACTTGTTGAGACAGCCAAGGAAGCCAAGGAGAAGGC AAAACACTTGTTGAGACAGCCAAAGAAGCCAAGGAGAAGGC < 41bp 0.744350777688311 0.518201750416271 0.593694 0.24301049 prediction 0.45229805454408 Functional Loss - PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176733457 chr5:176733460 synonymous SNV . 0 24 hm5C_associated_SNPs_77589 0 0 1 0 2 PRELID1 chr5:176733423 3'AG 176733423 Downstream 38bp
chr5 176733460 176733460 1 + G A ESCA 176733457 + 176733437 176733477 41 AAAACACTTGTTGAGACAGCCAAGGAAGCCAAGGAGAAGGC AAAACACTTGTTGAGACAGCCAAAGAAGCCAAGGAGAAGGC < 41bp 0.744350777688311 0.518201750416271 0.593694 0.24301049 prediction 0.45229805454408 Functional Loss - PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176733457 chr5:176733460 synonymous SNV . 0 24 hm5C_associated_SNPs_77589 0 0 1 0 2 PRELID1 chr5:176733456 3'AG 176733456 Downstream 5bp
chr9 133943616 133943616 1 + G T LUAD 133943614 + 133943594 133943634 41 TCCAGCCTGGGAGGGGCTGCCGGAGGTAGGTAGGGTGAGAC TCCAGCCTGGGAGGGGCTGCCGTAGGTAGGTAGGGTGAGAC < 41bp 0.726147370344924 0.373372614689788 0.9151737 0.5645355 prediction 0.452294740689849 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133943614 chr9:133943616 synonymous SNV . 0 23 hm5C_associated_SNPs_77592 0 0 0 0 1 LAMC3 chr9:133943618 5'GT 133943618 Upstream 3bp
chr14 24771499 24771499 1 + G A ESCA 24771496 + 24771476 24771516 41 GACTCCTGGAGCAGGTCCTGCTGGTGTTGGAGCCCCCAAGA GACTCCTGGAGCAGGTCCTGCTGATGTTGGAGCCCCCAAGA < 41bp 0.795361000154769 0.569217408385358 0.7083208 0.5077237 prediction 0.452287183538821 Functional Loss - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24771496 chr14:24771499 nonsynonymous SNV 0.973 4 24 hm5C_associated_SNPs_77593 0 0 1 0 1 NOP9 chr14:24771438 3'AG 24771438 Downstream 62bp
chr7 142561410 142561410 1 + G A SKCM 142561407 + 142561387 142561427 41 AGAGGTATTGCTGGACACCACCGGAGAGACATCTGAGATTG AGAGGTATTGCTGGACACCACCGAAGAGACATCTGAGATTG < 41bp 0.790565444301323 0.564424673430916 0.816864 0.28384563 prediction 0.452281541740813 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142561407 chr7:142561410 nonsynonymous SNV 0.923 1 24 hm5C_associated_SNPs_77594 0 0 0 0 2 EPHB6 chr7:142561389 3'AG 142561389 Downstream 22bp
chr7 142561410 142561410 1 + G A SKCM 142561407 + 142561387 142561427 41 AGAGGTATTGCTGGACACCACCGGAGAGACATCTGAGATTG AGAGGTATTGCTGGACACCACCGAAGAGACATCTGAGATTG < 41bp 0.790565444301323 0.564424673430916 0.816864 0.28384563 prediction 0.452281541740813 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142561407 chr7:142561410 nonsynonymous SNV 0.923 1 24 hm5C_associated_SNPs_77594 0 0 0 0 2 EPHB6 chr7:142561453 5'GT 142561453 Upstream 44bp
chr17 48548430 48548430 1 + G A BLCA 48548427 + 48548407 48548447 41 GAGAACAGTCCCGTGACATTCGCGCACTTCCCTGAGGACAC GAGAACAGTCCCGTGACATTCGCACACTTCCCTGAGGACAC < 41bp 0.755597267143283 0.529461117677883 0.34499675 0.17116913 prediction 0.4522722989308 Functional Loss - ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48548427 chr17:48548430 synonymous SNV . 0 24 hm5C_associated_SNPs_77599 0 0 1 0 2 ACSF2 chr17:48548389 3'AG 48548389 Downstream 42bp
chr17 48548430 48548430 1 + G A BLCA 48548427 + 48548407 48548447 41 GAGAACAGTCCCGTGACATTCGCGCACTTCCCTGAGGACAC GAGAACAGTCCCGTGACATTCGCACACTTCCCTGAGGACAC < 41bp 0.755597267143283 0.529461117677883 0.34499675 0.17116913 prediction 0.4522722989308 Functional Loss - ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48548427 chr17:48548430 synonymous SNV . 0 24 hm5C_associated_SNPs_77599 0 0 1 0 2 ACSF2 chr17:48548496 5'GT 48548496 Upstream 67bp
chr4 111464013 111464013 1 + G A BLCA 111464010 + 111463990 111464030 41 TATGAAGTAGCAACTTGGGACTCGATAGCTACAGCGCTCTC TATGAAGTAGCAACTTGGGACTCAATAGCTACAGCGCTCTC < 41bp 0.731467011343897 0.505331186425798 0.7292304 0.20892227 prediction 0.452271649836199 Functional Loss - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111464010 chr4:111464013 synonymous SNV . 0 24 hm5C_associated_SNPs_77600 0 0 0 0 1 ENPEP chr4:111464043 5'GT 111464043 Upstream 31bp
chr12 27109584 27109584 1 + G T UCEC 27109581 + 27109561 27109601 41 GACAAATCAGAGAGTTGCAACAAGAAAACAAAGGTAAGATA GACAAATCAGAGAGTTGCAACAATAAAACAAAGGTAAGATA < 41bp 0.726133615045134 0.36166035413751 0.5915874 0.62130994 prediction 0.452267230090268 Functional Loss - FGFR1OP2 ENSG00000111790 CDS Human protein_coding chr12:27109581 chr12:27109584 stopgain 0.998 1 24 hm5C_associated_SNPs_77604 0 0 1 0 1 FGFR1OP2 chr12:27109593 5'GT 27109593 Upstream 10bp
chr21 45553649 45553649 1 + G A LIHC 45553646 + 45553626 45553666 41 CTGCATTCACGTCCCTGTCCCCCGGCGGTCGGACGCCTTCC CTGCATTCACGTCCCTGTCCCCCAGCGGTCGGACGCCTTCC < 41bp 0.726132291163521 0.469977789529377 0.3150406 0.1058642 prediction 0.452264582327042 Functional Loss - C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45553646 chr21:45553649 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_77605 0 0 1 0 1 C21orf33 chr21:45553720 5'GT 45553720 Upstream 72bp
chr6 3264502 3264502 1 + G C rs4959787 3264498 + 3264478 3264518 41 GGCGTAGAGTGGGGATTAAGCAAAGGTCATGAGGCTGAATG GGCGTAGAGTGGGGATTAAGCAAACGTCATGAGGCTGAATG < 41bp 0.858856121096625 0.632724368697563 0.6766138 0.26653674 prediction 0.452263504798125 Functional Loss - PSMG4 ENSG00000180822 CDS Human protein_coding chr6:3264498 chr6:3264502 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_77606 0 0 0 0 2 PSMG4 chr6:3264443 3'AG 3264443 Downstream 60bp
chr6 3264502 3264502 1 + G C rs4959787 3264498 + 3264478 3264518 41 GGCGTAGAGTGGGGATTAAGCAAAGGTCATGAGGCTGAATG GGCGTAGAGTGGGGATTAAGCAAACGTCATGAGGCTGAATG < 41bp 0.858856121096625 0.632724368697563 0.6766138 0.26653674 prediction 0.452263504798125 Functional Loss - PSMG4 ENSG00000180822 CDS Human protein_coding chr6:3264498 chr6:3264502 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_77606 0 0 0 0 2 PSMG4 chr6:3264559 5'GT 3264559 Upstream 58bp
chr20 31887734 31887734 1 + G A LUAD 31887731 + 31887711 31887751 41 TTTCCCTCAGCATTGACCGTCTGGAGTTTGACCTTCTGTAT TTTCCCTCAGCATTGACCGTCTGAAGTTTGACCTTCTGTAT < 41bp 0.778711826120145 0.552580562991866 0.31362587 0.09351042 prediction 0.452262526256558 Functional Loss - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31887731 chr20:31887734 nonsynonymous SNV 0.704 0 24 hm5C_associated_SNPs_77607 0 0 0 0 2 BPIFB1 chr20:31887705 3'AG 31887705 Downstream 30bp
chr20 31887734 31887734 1 + G A LUAD 31887731 + 31887711 31887751 41 TTTCCCTCAGCATTGACCGTCTGGAGTTTGACCTTCTGTAT TTTCCCTCAGCATTGACCGTCTGAAGTTTGACCTTCTGTAT < 41bp 0.778711826120145 0.552580562991866 0.31362587 0.09351042 prediction 0.452262526256558 Functional Loss - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31887731 chr20:31887734 nonsynonymous SNV 0.704 0 24 hm5C_associated_SNPs_77607 0 0 0 0 2 BPIFB1 chr20:31887790 5'GT 31887790 Upstream 57bp
chr12 121437346 121437346 1 + G A SKCM 121437343 + 121437323 121437363 41 GGCTTCACACGCCGGCATCTCAGGCCACCACCCTCCACGTC GGCTTCACACGCCGGCATCTCAGACCACCACCCTCCACGTC < 41bp 0.802120415194725 0.575996578786401 0.90712595 0.32612467 prediction 0.452247672816648 Functional Loss - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121437343 chr12:121437346 nonsynonymous SNV 0.446 1 24 hm5C_associated_SNPs_77614 0 0 0 0 3 HNF1A chr12:121437265 3'AG 121437265 Downstream 82bp
chr12 121437346 121437346 1 + G A SKCM 121437343 + 121437323 121437363 41 GGCTTCACACGCCGGCATCTCAGGCCACCACCCTCCACGTC GGCTTCACACGCCGGCATCTCAGACCACCACCCTCCACGTC < 41bp 0.802120415194725 0.575996578786401 0.90712595 0.32612467 prediction 0.452247672816648 Functional Loss - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121437343 chr12:121437346 nonsynonymous SNV 0.446 1 24 hm5C_associated_SNPs_77614 0 0 0 0 3 HNF1A chr12:121437286 3'AG 121437286 Downstream 61bp
chr12 121437346 121437346 1 + G A SKCM 121437343 + 121437323 121437363 41 GGCTTCACACGCCGGCATCTCAGGCCACCACCCTCCACGTC GGCTTCACACGCCGGCATCTCAGACCACCACCCTCCACGTC < 41bp 0.802120415194725 0.575996578786401 0.90712595 0.32612467 prediction 0.452247672816648 Functional Loss - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121437343 chr12:121437346 nonsynonymous SNV 0.446 1 24 hm5C_associated_SNPs_77614 0 0 0 0 3 HNF1A chr12:121437430 5'GT 121437430 Upstream 85bp
chr4 56233865 56233865 1 + G A UCEC 56233862 + 56233842 56233882 41 AGTATAAGTGCCATGTTATTCTCGGCAATCTCAGGAAAAAT AGTATAAGTGCCATGTTATTCTCAGCAATCTCAGGAAAAAT < 41bp 0.734484539499511 0.508364366119038 0.30192587 0.12311253 prediction 0.452240346760945 Functional Loss - SRD5A3 ENSG00000128039 CDS Human protein_coding chr4:56233862 chr4:56233865 nonsynonymous SNV 0.034 0 24 hm5C_associated_SNPs_77616 0 0 1 0 1 SRD5A3 chr4:56233889 5'GT 56233889 Upstream 25bp
chr19 36394317 36394317 1 + A C STAD 36394316 + 36394296 36394336 41 TGCCTTTTACCCTGGCACTTCAGGTATCACTTCCACCCCAG TGCCTTTTACCCTGGCACTTCCGGTATCACTTCCACCCCAG < 41bp 0.821621441288348 0.595501488650291 0.44824514 0.17299303 prediction 0.452239905276116 Functional Loss - HCST ENSG00000126264 CDS Human protein_coding chr19:36394316 chr19:36394317 synonymous SNV . 0 22 hm5C_associated_SNPs_77617 0 0 0 0 2 HCST chr19:36394253 3'AG 36394253 Downstream 65bp
chr19 36394317 36394317 1 + A C STAD 36394316 + 36394296 36394336 41 TGCCTTTTACCCTGGCACTTCAGGTATCACTTCCACCCCAG TGCCTTTTACCCTGGCACTTCCGGTATCACTTCCACCCCAG < 41bp 0.821621441288348 0.595501488650291 0.44824514 0.17299303 prediction 0.452239905276116 Functional Loss - HCST ENSG00000126264 CDS Human protein_coding chr19:36394316 chr19:36394317 synonymous SNV . 0 22 hm5C_associated_SNPs_77617 0 0 0 0 2 HCST chr19:36394318 5'GT 36394318 Upstream 2bp
chr16 67034837 67034837 1 + C T LGG 67034835 + 67034815 67034855 41 AGGGCTCTGACTTGGCCGCCCGCGAGAAAGTGGTGCTGGTG AGGGCTCTGACTTGGCCGCCCGTGAGAAAGTGGTGCTGGTG < 41bp 0.830503573626339 0.604387017680357 0.88359064 0.7422396 prediction 0.452233111891965 Functional Loss - CES4A ENSG00000172824 CDS Human protein_coding chr16:67034835 chr16:67034837 synonymous SNV . 0 23 hm5C_associated_SNPs_77618 0 0 0 0 3 CES4A chr16:67034760 3'AG 67034760 Downstream 78bp
chr16 67034837 67034837 1 + C T LGG 67034835 + 67034815 67034855 41 AGGGCTCTGACTTGGCCGCCCGCGAGAAAGTGGTGCTGGTG AGGGCTCTGACTTGGCCGCCCGTGAGAAAGTGGTGCTGGTG < 41bp 0.830503573626339 0.604387017680357 0.88359064 0.7422396 prediction 0.452233111891965 Functional Loss - CES4A ENSG00000172824 CDS Human protein_coding chr16:67034835 chr16:67034837 synonymous SNV . 0 23 hm5C_associated_SNPs_77618 0 0 0 0 3 CES4A chr16:67034893 5'GT 67034893 Upstream 57bp
chr16 67034837 67034837 1 + C T LGG 67034835 + 67034815 67034855 41 AGGGCTCTGACTTGGCCGCCCGCGAGAAAGTGGTGCTGGTG AGGGCTCTGACTTGGCCGCCCGTGAGAAAGTGGTGCTGGTG < 41bp 0.830503573626339 0.604387017680357 0.88359064 0.7422396 prediction 0.452233111891965 Functional Loss - CES4A ENSG00000172824 CDS Human protein_coding chr16:67034835 chr16:67034837 synonymous SNV . 0 23 hm5C_associated_SNPs_77618 0 0 0 0 3 CES4A chr16:67034905 5'GT 67034905 Upstream 69bp
chr1 158057634 158057634 1 + G A STAD 158057631 + 158057611 158057651 41 CCTGCCAGGCCACAGCCAACCCCGAGATCTTGGGCTACAGG CCTGCCAGGCCACAGCCAACCCCAAGATCTTGGGCTACAGG < 41bp 0.72611381924387 0.48192870370869 0.27227068 0.17932773 prediction 0.45222763848774 Functional Loss - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158057631 chr1:158057634 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_77619 0 0 0 0 2 KIRREL chr1:158057545 3'AG 158057545 Downstream 90bp
chr1 158057634 158057634 1 + G A STAD 158057631 + 158057611 158057651 41 CCTGCCAGGCCACAGCCAACCCCGAGATCTTGGGCTACAGG CCTGCCAGGCCACAGCCAACCCCAAGATCTTGGGCTACAGG < 41bp 0.72611381924387 0.48192870370869 0.27227068 0.17932773 prediction 0.45222763848774 Functional Loss - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158057631 chr1:158057634 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_77619 0 0 0 0 2 KIRREL chr1:158057650 5'GT 158057650 Upstream 17bp
chr17 33457354 33457354 1 + G A SKCM 33457351 + 33457331 33457371 41 TTTCCTGAGAACTACCCCATCCAGATCACCGTGCGGCGCAA TTTCCTGAGAACTACCCCATCCAAATCACCGTGCGGCGCAA < 41bp 0.76435297854823 0.538240318825235 0.38566464 0.22191355 prediction 0.452225319445989 Functional Loss - FNDC8 ENSG00000073598 CDS Human protein_coding chr17:33457351 chr17:33457354 synonymous SNV . 0 24 hm5C_associated_SNPs_77620 0 0 0 0 1 FNDC8 chr17:33457301 3'AG 33457301 Downstream 54bp
chr2 228137698 228137698 1 + C T SKCM 228137696 + 228137676 228137716 41 TGAGAAAGGGGACCAAGGTCCTCCAGGGGATCCTGGCTCCC TGAGAAAGGGGACCAAGGTCCTTCAGGGGATCCTGGCTCCC < 41bp 0.726106532006172 0.434765675804996 0.9445605 0.72694045 prediction 0.452213064012344 Functional Loss - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228137696 chr2:228137698 nonsynonymous SNV 0.992 2 23 hm5C_associated_SNPs_77622 0 0 1 0 1 COL4A3 chr2:228137665 3'AG 228137665 Downstream 34bp
chr1 156144971 156144971 1 + G A rs2075164 156144968 + 156144948 156144988 41 CTGTGTGGACTGTGTCCTTGCCCGGGACCCCCACTGTGCCT CTGTGTGGACTGTGTCCTTGCCCAGGACCCCCACTGTGCCT < 41bp 0.726096453273086 0.468002655226064 0.35919648 0.051005125 prediction 0.452192906546172 Functional Loss - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156144968 chr1:156144971 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_77627 3 0 0 0 1 SEMA4A chr1:156145034 5'GT 156145034 Upstream 64bp
chr1 156144970 156144970 1 + C T LAML 156144968 + 156144948 156144988 41 CTGTGTGGACTGTGTCCTTGCCCGGGACCCCCACTGTGCCT CTGTGTGGACTGTGTCCTTGCCTGGGACCCCCACTGTGCCT < 41bp 0.726096453273086 0.452961955211588 0.35919648 0.3909292 prediction 0.452192906546172 Functional Loss - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156144968 chr1:156144970 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_77628 1 0 0 0 1 SEMA4A chr1:156145034 5'GT 156145034 Upstream 65bp
chr1 65691827 65691827 1 + G A UCEC 65691824 + 65691804 65691844 41 GTTTACACACTTTTCTCAAACAAGATCACACCTATTCAGTC GTTTACACACTTTTCTCAAACAAAATCACACCTATTCAGTC < 41bp 0.726133437146347 0.500038350657954 0.099568635 0.073400944 prediction 0.452190172976785 Functional Loss - AK4 ENSG00000162433 CDS Human protein_coding chr1:65691824 chr1:65691827 synonymous SNV . 0 24 hm5C_associated_SNPs_77629 0 0 0 0 1 AK4 chr1:65691746 3'AG 65691746 Downstream 82bp
chrX 150908182 150908182 1 + G C rs6627455 150908178 + 150908158 150908198 41 GAGGGGGATGGCAAAGGCGACAAGGATGGCGAGGACAAAGG GAGGGGGATGGCAAAGGCGACAAGCATGGCGAGGACAAAGG < 41bp 0.726093583403173 0.432033584749707 0.17569795 0.089642465 prediction 0.452187166806346 Functional Loss - CNGA2 ENSG00000183862 CDS Human protein_coding chrX:150908178 chrX:150908182 nonsynonymous SNV 0.962 1 25 hm5C_associated_SNPs_77633 0 0 0 0 1 CNGA2 chrX:150908204 5'GT 150908204 Upstream 23bp
chrX 150908181 150908181 1 + G T UCEC 150908178 + 150908158 150908198 41 GAGGGGGATGGCAAAGGCGACAAGGATGGCGAGGACAAAGG GAGGGGGATGGCAAAGGCGACAATGATGGCGAGGACAAAGG < 41bp 0.726093583403173 0.327755078120747 0.17569795 0.09344742 prediction 0.452187166806346 Functional Loss - CNGA2 ENSG00000183862 CDS Human protein_coding chrX:150908178 chrX:150908181 nonsynonymous SNV 0.964 1 24 hm5C_associated_SNPs_77634 0 0 0 0 1 CNGA2 chrX:150908204 5'GT 150908204 Upstream 24bp
chr7 143018932 143018932 1 + G A SKCM 143018929 + 143018909 143018949 41 GGCCTGGGCAGTGGCATCCCCGTGGGGAAAGAGGTAGGCCT GGCCTGGGCAGTGGCATCCCCGTAGGGAAAGAGGTAGGCCT < 41bp 0.726089568926872 0.481820188081865 0.66008127 0.2910081 prediction 0.452179137853745 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143018929 chr7:143018932 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_77636 0 0 0 0 1 CLCN1 chr7:143018941 5'GT 143018941 Upstream 10bp
chr17 7557506 7557506 1 + C T HNSC 7557503 + 7557483 7557523 41 CGGACCCAGCTGGGCAACTGCTCCGGCATTGGGGACTCCAC CGGACCCAGCTGGGCAACTGCTCTGGCATTGGGGACTCCAC < 41bp 0.741407071359419 0.515317613948049 0.5075559 0.24902883 prediction 0.452178914822741 Functional Loss - ATP1B2 ENSG00000129244 CDS Human protein_coding chr17:7557503 chr17:7557506 synonymous SNV . 0 24 hm5C_associated_SNPs_77637 0 0 1 0 1 ATP1B2 chr17:7557575 5'GT 7557575 Upstream 70bp
chr3 172025228 172025228 1 + C T rs36032820 172025226 + 172025206 172025246 41 TCACCACCCACAGCTGTGCACCCGAGTGTCCTTTCCCCCCT TCACCACCCACAGCTGTGCACCTGAGTGTCCTTTCCCCCCT < 41bp 0.726086589055267 0.441377670957229 0.030145109 0.020293266 prediction 0.452173178110534 Functional Loss - FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172025226 chr3:172025228 synonymous SNV . 0 23 hm5C_associated_SNPs_77638 0 0 1 0 1 FNDC3B chr3:172025291 5'GT 172025291 Upstream 64bp
chr6 142737023 142737023 1 + G A SKCM 142737020 + 142737000 142737040 41 CTCCTCTTCCTCCTAGATGGCTGGATCACCTCCTTCAATGT CTCCTCTTCCTCCTAGATGGCTGAATCACCTCCTTCAATGT < 41bp 0.763246763942043 0.537165824602578 0.05840242 0.036108136 prediction 0.452161878678929 Functional Loss - ADGRG6 ENSG00000112414 CDS Human protein_coding chr6:142737020 chr6:142737023 stopgain 0.967 1 24 hm5C_associated_SNPs_77641 0 0 1 0 1 ADGRG6 chr6:142736933 3'AG 142736933 Downstream 91bp
chr2 3627722 3627722 1 + G A UCEC 3627719 + 3627699 3627739 41 GCCGTACTCTGACAGCTGTGCACGATGCCATCCTTGAGGAC GCCGTACTCTGACAGCTGTGCACAATGCCATCCTTGAGGAC < 41bp 0.764356543810145 0.538277109736558 0.0644362 0.018007904 prediction 0.452158868147174 Functional Loss - RPS7 ENSG00000171863 CDS Human protein_coding chr2:3627719 chr2:3627722 nonsynonymous SNV 0.893 2 24 hm5C_associated_SNPs_77642 0 0 1 0 1 RPS7 chr2:3627700 3'AG 3627700 Downstream 23bp
chr2 241534059 241534059 1 + G T LUSC 241534056 + 241534036 241534076 41 GTGGAGGAGGAGGAGTTCCTCAGGGAGTTTGACGAGCTCAC GTGGAGGAGGAGGAGTTCCTCAGTGAGTTTGACGAGCTCAC < 41bp 0.923755757994798 0.69767884750447 0.91586095 0.5161902 prediction 0.452153820980655 Functional Loss - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241534056 chr2:241534059 nonsynonymous SNV 0.973 0 24 hm5C_associated_SNPs_77643 0 0 1 2 2 CAPN10 chr2:241533960 3'AG 241533960 Downstream 100bp
chr2 241534059 241534059 1 + G T LUSC 241534056 + 241534036 241534076 41 GTGGAGGAGGAGGAGTTCCTCAGGGAGTTTGACGAGCTCAC GTGGAGGAGGAGGAGTTCCTCAGTGAGTTTGACGAGCTCAC < 41bp 0.923755757994798 0.69767884750447 0.91586095 0.5161902 prediction 0.452153820980655 Functional Loss - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241534056 chr2:241534059 nonsynonymous SNV 0.973 0 24 hm5C_associated_SNPs_77643 0 0 1 2 2 CAPN10 chr2:241534126 5'GT 241534126 Upstream 68bp
chr16 67681608 67681608 1 + C T UCEC 67681606 + 67681586 67681626 41 TGACTGCACTCAGCAGACACCTCGAGCGTTGTCCAGGAGCC TGACTGCACTCAGCAGACACCTTGAGCGTTGTCCAGGAGCC < 41bp 0.726076271058239 0.451336231661623 0.52898663 0.1527769 prediction 0.452152542116478 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67681606 chr16:67681608 synonymous SNV . 0 23 hm5C_associated_SNPs_77645 0 0 0 0 2 CARMIL2 chr16:67681583 3'AG 67681583 Downstream 26bp
chr16 67681608 67681608 1 + C T UCEC 67681606 + 67681586 67681626 41 TGACTGCACTCAGCAGACACCTCGAGCGTTGTCCAGGAGCC TGACTGCACTCAGCAGACACCTTGAGCGTTGTCCAGGAGCC < 41bp 0.726076271058239 0.451336231661623 0.52898663 0.1527769 prediction 0.452152542116478 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67681606 chr16:67681608 synonymous SNV . 0 23 hm5C_associated_SNPs_77645 0 0 0 0 2 CARMIL2 chr16:67681669 5'GT 67681669 Upstream 62bp
chr9 135374960 135374960 1 + C T LUAD 135374957 + 135374937 135374977 41 GAAAGAGCCGCCCCCTCTCCCTCCAAACATGACATTTGGGA GAAAGAGCCGCCCCCTCTCCCTCTAAACATGACATTTGGGA < 41bp 0.728472829783394 0.502397275319676 0.94635046 0.88744307 prediction 0.452151108927435 Functional Loss - CFAP77 ENSG00000188523 CDS Human protein_coding chr9:135374957 chr9:135374960 nonsynonymous SNV 0.839 2 24 hm5C_associated_SNPs_77646 0 0 0 0 1 CFAP77 chr9:135374987 5'GT 135374987 Upstream 28bp
chr16 72046132 72046132 1 + C T STAD 72046130 + 72046110 72046150 41 CACCTCCCTGGGGCTCCTTCCACGGGCCAGATTTCAAGACT CACCTCCCTGGGGCTCCTTCCATGGGCCAGATTTCAAGACT < 41bp 0.83838468522391 0.612310404796214 0.88134265 0.82125425 prediction 0.452148560855391 Functional Loss - DHODH ENSG00000102967 CDS Human protein_coding chr16:72046130 chr16:72046132 nonsynonymous SNV 0.386 3 23 hm5C_associated_SNPs_77648 0 0 1 0 1 DHODH chr16:72046161 5'GT 72046161 Upstream 30bp
chr1 156025075 156025075 1 + A C STAD 156025074 + 156025054 156025094 41 GCTGCTGAATAACGAGGGATCACTGCTGGCCTACTCTGGTT GCTGCTGAATAACGAGGGATCCCTGCTGGCCTACTCTGGTT < 41bp 0.726068284529867 0.468769029302718 0.4327548 0.29491168 prediction 0.452136569059735 Functional Loss - LAMTOR2 ENSG00000116586 CDS Human protein_coding chr1:156025074 chr1:156025075 synonymous SNV . 0 22 hm5C_associated_SNPs_77650 0 0 1 0 1 LAMTOR2 chr1:156025054 3'AG 156025054 Downstream 22bp
chr3 9803194 9803194 1 - A G STAD 9803195 - 9803175 9803215 41 GAAGTCCTGGCCCAGAAGCCCTACAGCAAGGCTGTGGATTG GAAGTCCTGGCCCAGAAGCCCCACAGCAAGGCTGTGGATTG < 41bp 0.726059471189899 0.455984367435208 0.8769768 0.14741641 prediction 0.452118942379798 Functional Loss - CAMK1 ENSG00000134072 CDS Human protein_coding chr3:9803195 chr3:9803194 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_77653 0 0 1 0 2 CAMK1 chr3:9803145 5'GT 9803145 Upstream 50bp
chr3 9803194 9803194 1 - A G STAD 9803195 - 9803175 9803215 41 GAAGTCCTGGCCCAGAAGCCCTACAGCAAGGCTGTGGATTG GAAGTCCTGGCCCAGAAGCCCCACAGCAAGGCTGTGGATTG < 41bp 0.726059471189899 0.455984367435208 0.8769768 0.14741641 prediction 0.452118942379798 Functional Loss - CAMK1 ENSG00000134072 CDS Human protein_coding chr3:9803195 chr3:9803194 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_77653 0 0 1 0 2 CAMK1 chr3:9803220 3'AG 9803220 Downstream 27bp
chr17 33507692 33507692 1 + G A SKCM 33507689 + 33507669 33507709 41 ATGTGCAACATGGTGCTCCACAAGGAGGTGAGGCAGGGGCT ATGTGCAACATGGTGCTCCACAAAGAGGTGAGGCAGGGGCT < 41bp 0.72605658928397 0.478224501762148 0.39753732 0.14166817 prediction 0.45211317856794 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33507689 chr17:33507692 synonymous SNV . 0 24 hm5C_associated_SNPs_77657 0 0 0 0 1 UNC45B chr17:33507695 5'GT 33507695 Upstream 4bp
chr1 17563890 17563890 1 + G A LIHC 17563887 + 17563867 17563907 41 CAGGCACCCGTGGAGCTCTACTCGGACTGGCTCTCTGTGGG CAGGCACCCGTGGAGCTCTACTCAGACTGGCTCTCTGTGGG < 41bp 0.72605291942153 0.478534670421924 0.3515007 0.13835713 prediction 0.452105838843061 Functional Loss - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17563887 chr1:17563890 synonymous SNV . 0 24 hm5C_associated_SNPs_77660 0 0 0 0 2 PADI1 chr1:17563809 3'AG 17563809 Downstream 82bp
chr1 17563890 17563890 1 + G A LIHC 17563887 + 17563867 17563907 41 CAGGCACCCGTGGAGCTCTACTCGGACTGGCTCTCTGTGGG CAGGCACCCGTGGAGCTCTACTCAGACTGGCTCTCTGTGGG < 41bp 0.72605291942153 0.478534670421924 0.3515007 0.13835713 prediction 0.452105838843061 Functional Loss - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17563887 chr1:17563890 synonymous SNV . 0 24 hm5C_associated_SNPs_77660 0 0 0 0 2 PADI1 chr1:17563953 5'GT 17563953 Upstream 64bp
chr14 70420231 70420231 1 + G A SKCM 70420228 + 70420208 70420248 41 GTGTTTGTCCCAGAGTGTGGCGAGGATGGCTCCTTTACCCA GTGTTTGTCCCAGAGTGTGGCGAAGATGGCTCCTTTACCCA < 41bp 0.72605099109867 0.46737667638363 0.8981781 0.6712081 prediction 0.45210198219734 Functional Loss - SMOC1 ENSG00000198732 CDS Human protein_coding chr14:70420228 chr14:70420231 synonymous SNV . 0 24 hm5C_associated_SNPs_77662 0 0 1 0 2 SMOC1 chr14:70420137 3'AG 70420137 Downstream 95bp
chr14 70420231 70420231 1 + G A SKCM 70420228 + 70420208 70420248 41 GTGTTTGTCCCAGAGTGTGGCGAGGATGGCTCCTTTACCCA GTGTTTGTCCCAGAGTGTGGCGAAGATGGCTCCTTTACCCA < 41bp 0.72605099109867 0.46737667638363 0.8981781 0.6712081 prediction 0.45210198219734 Functional Loss - SMOC1 ENSG00000198732 CDS Human protein_coding chr14:70420228 chr14:70420231 synonymous SNV . 0 24 hm5C_associated_SNPs_77662 0 0 1 0 2 SMOC1 chr14:70420249 5'GT 70420249 Upstream 19bp
chr13 98009818 98009818 1 + C T SKCM 98009816 + 98009796 98009836 41 GGTACCAGCGCGGTCTTTAACCCCAGCGTCTTGCACTACCA GGTACCAGCGCGGTCTTTAACCTCAGCGTCTTGCACTACCA < 41bp 0.851464699013598 0.625414066627501 0.4263099 0.15918651 prediction 0.452101264772194 Functional Loss - MBNL2 ENSG00000139793 CDS Human protein_coding chr13:98009816 chr13:98009818 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_77663 0 0 1 0 2 MBNL2 chr13:98009736 3'AG 98009736 Downstream 83bp
chr13 98009818 98009818 1 + C T SKCM 98009816 + 98009796 98009836 41 GGTACCAGCGCGGTCTTTAACCCCAGCGTCTTGCACTACCA GGTACCAGCGCGGTCTTTAACCTCAGCGTCTTGCACTACCA < 41bp 0.851464699013598 0.625414066627501 0.4263099 0.15918651 prediction 0.452101264772194 Functional Loss - MBNL2 ENSG00000139793 CDS Human protein_coding chr13:98009816 chr13:98009818 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_77663 0 0 1 0 2 MBNL2 chr13:98009889 5'GT 98009889 Upstream 72bp
chr2 39893425 39893425 1 + G T LUAD 39893423 + 39893403 39893443 41 GGCGGGCTGGACGCCGAGTGCGGCCGGCCCCTCTTCGCCAC GGCGGGCTGGACGCCGAGTGCGTCCGGCCCCTCTTCGCCAC < 41bp 0.898763004788572 0.67271342963395 0.8707837 0.2644853 prediction 0.452099150309245 Functional Loss - TMEM178A ENSG00000152154 CDS Human protein_coding chr2:39893423 chr2:39893425 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_77664 0 0 1 0 1 TMEM178A chr2:39893514 5'GT 39893514 Upstream 90bp
chr6 7542253 7542253 1 + G A rs77445784 7542250 + 7542230 7542270 41 TACGAGGTGACCAGCGGCGGCGGGGGCACCAGCAGGATGTA TACGAGGTGACCAGCGGCGGCGGAGGCACCAGCAGGATGTA < 41bp 0.754364363291161 0.528319257292738 0.91218877 0.90935385 prediction 0.452090211996845 Functional Loss - DSP ENSG00000096696 CDS Human protein_coding chr6:7542250 chr6:7542253 synonymous SNV . 0 24 hm5C_associated_SNPs_77667 8 0 1 0 1 DSP chr6:7542318 5'GT 7542318 Upstream 66bp
chr20 44641083 44641083 1 + G A GBM 44641080 + 44641060 44641100 41 CTCCAGGATACAGTTTGTTCCTCGTGGCGGCGCATGAGTTC CTCCAGGATACAGTTTGTTCCTCATGGCGGCGCATGAGTTC < 41bp 0.726036156497557 0.483431501910146 0.11871645 0.18438512 prediction 0.452072312995114 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44641080 chr20:44641083 nonsynonymous SNV 0.783 4 24 hm5C_associated_SNPs_77670 0 0 0 0 1 MMP9 chr20:44641066 3'AG 44641066 Downstream 18bp
chr16 67208605 67208605 1 + G A SKCM 67208602 + 67208582 67208622 41 CGGCTCGGGGACCACATGCCCCGGGTTGCCCAGAGCTTCAG CGGCTCGGGGACCACATGCCCCGAGTTGCCCAGAGCTTCAG < 41bp 0.770709919581231 0.544677195102166 0.7843325 0.17981973 prediction 0.45206544895813 Functional Loss - NOL3 ENSG00000140939 CDS Human protein_coding chr16:67208602 chr16:67208605 nonsynonymous SNV 0.410 0 24 hm5C_associated_SNPs_77672 0 0 0 0 1 NOL3 chr16:67208524 3'AG 67208524 Downstream 82bp
chr19 8553643 8553643 1 + G C BLCA 8553642 + 8553622 8553662 41 GGGTGTGGCGTGGTTAAGTTCGAGTCGCCAGAGGTGGCCGA GGGTGTGGCGTGGTTAAGTTCCAGTCGCCAGAGGTGGCCGA < 41bp 0.876394956974713 0.650362266921759 0.4286657 0.2460686 prediction 0.452065380105909 Functional Loss - HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8553642 chr19:8553643 nonsynonymous SNV 0.921 4 22 hm5C_associated_SNPs_77673 0 0 1 1 1 HNRNPM chr19:8553575 3'AG 8553575 Downstream 69bp
chr3 23959375 23959375 1 + G A UCEC 23959372 + 23959352 23959392 41 TGGGTGCATACAAGTACATCCAGGAGCTATGGAGAAAGAAG TGGGTGCATACAAGTACATCCAGAAGCTATGGAGAAAGAAG < 41bp 0.726032173653118 0.4992314922249 0.45498765 0.30429623 prediction 0.452064347306236 Functional Loss - RPL15 ENSG00000174748 CDS Human protein_coding chr3:23959372 chr3:23959375 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_77674 0 0 0 0 2 RPL15 chr3:23959328 3'AG 23959328 Downstream 48bp
chr3 23959375 23959375 1 + G A UCEC 23959372 + 23959352 23959392 41 TGGGTGCATACAAGTACATCCAGGAGCTATGGAGAAAGAAG TGGGTGCATACAAGTACATCCAGAAGCTATGGAGAAAGAAG < 41bp 0.726032173653118 0.4992314922249 0.45498765 0.30429623 prediction 0.452064347306236 Functional Loss - RPL15 ENSG00000174748 CDS Human protein_coding chr3:23959372 chr3:23959375 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_77674 0 0 0 0 2 RPL15 chr3:23959341 3'AG 23959341 Downstream 35bp
chrX 70443602 70443602 1 + G T ESCA 70443600 + 70443580 70443620 41 CCTTGCTCAGTGGCGTGAACCGGCATTCTACTGCCATTGGC CCTTGCTCAGTGGCGTGAACCGTCATTCTACTGCCATTGGC < 41bp 0.896712297165984 0.670682795753132 0.56187993 0.4627702 prediction 0.452059002825703 Functional Loss - GJB1 ENSG00000169562 CDS Human protein_coding chrX:70443600 chrX:70443602 synonymous SNV . 0 23 hm5C_associated_SNPs_77676 0 0 1 0 1 BCYRN1 chrX:70443542 3'AG 70443542 Downstream 61bp
chr19 15132710 15132710 1 + G A GBM 15132707 + 15132687 15132727 41 AGACACGTGGGCACCCAACTCCCGGAGGCTGCGCGCCTCGC AGACACGTGGGCACCCAACTCCCAGAGGCTGCGCGCCTCGC < 41bp 0.78396573288912 0.557936904575111 0.9146032 0.42760712 prediction 0.452057656628018 Functional Loss - CCDC105 ENSG00000160994 CDS Human protein_coding chr19:15132707 chr19:15132710 synonymous SNV . 0 24 hm5C_associated_SNPs_77677 0 0 0 0 1 CCDC105 chr19:15132731 5'GT 15132731 Upstream 22bp
chr6 30539327 30539327 1 + G T SKCM 30539324 + 30539304 30539344 41 TGGATCGGGGACGGAGAGAGCACGAGCCCATCAGGTGAGGC TGGATCGGGGACGGAGAGAGCACTAGCCCATCAGGTGAGGC < 41bp 0.72602162591374 0.438385035621 0.43239772 0.2707333 prediction 0.45204325182748 Functional Loss - ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30539324 chr6:30539327 synonymous SNV . 0 24 hm5C_associated_SNPs_77678 0 0 1 0 1 ABCF1 chr6:30539337 5'GT 30539337 Upstream 11bp
chr19 55179184 55179184 1 + T C rs142100665 55179183 + 55179163 55179203 41 CTCTCCTCCCTCCCCACTGTCTGGGGAATTCCTGGACACAA CTCTCCTCCCTCCCCACTGTCCGGGGAATTCCTGGACACAA < 41bp 0.760699593120947 0.534682006748379 0.84898233 0.937335 prediction 0.452035172745136 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55179183 chr19:55179184 synonymous SNV . 0 22 hm5C_associated_SNPs_77680 0 0 0 0 3 LILRB4 chr19:55179086 3'AG 55179086 Downstream 99bp
chr19 55179184 55179184 1 + T C rs142100665 55179183 + 55179163 55179203 41 CTCTCCTCCCTCCCCACTGTCTGGGGAATTCCTGGACACAA CTCTCCTCCCTCCCCACTGTCCGGGGAATTCCTGGACACAA < 41bp 0.760699593120947 0.534682006748379 0.84898233 0.937335 prediction 0.452035172745136 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55179183 chr19:55179184 synonymous SNV . 0 22 hm5C_associated_SNPs_77680 0 0 0 0 3 LILRB4 chr19:55179089 3'AG 55179089 Downstream 96bp
chr19 55179184 55179184 1 + T C rs142100665 55179183 + 55179163 55179203 41 CTCTCCTCCCTCCCCACTGTCTGGGGAATTCCTGGACACAA CTCTCCTCCCTCCCCACTGTCCGGGGAATTCCTGGACACAA < 41bp 0.760699593120947 0.534682006748379 0.84898233 0.937335 prediction 0.452035172745136 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55179183 chr19:55179184 synonymous SNV . 0 22 hm5C_associated_SNPs_77680 0 0 0 0 3 LILRB4 chr19:55179244 5'GT 55179244 Upstream 61bp
chr21 37757707 37757707 1 + G C rs541601358 37757703 + 37757683 37757723 41 GGCGCGCGGGAAGCGGCGCGCGCTGCGCGGGAGGTGACGGT GGCGCGCGGGAAGCGGCGCGCGCTCCGCGGGAGGTGACGGT < 41bp 0.726017261110616 0.450000598681098 0.80909353 0.58960426 prediction 0.452034522221233 Functional Loss - CHAF1B ENSG00000159259 UTR5 Human protein_coding chr21:37757703 chr21:37757707 . . 0 25 hm5C_associated_SNPs_77681 0 0 1 0 1 CHAF1B chr21:37757749 5'GT 37757749 Upstream 43bp
chr3 121613397 121613397 1 + G A GBM 121613394 + 121613374 121613414 41 CTCCATTGAAGAGGTACCACCTCGACCACCTAGCCCTCCAA CTCCATTGAAGAGGTACCACCTCAACCACCTAGCCCTCCAA < 41bp 0.774717146272799 0.548700875309377 0.8902575 0.23074669 prediction 0.452032541926845 Functional Loss - SLC15A2 ENSG00000163406 CDS Human protein_coding chr3:121613394 chr3:121613397 nonsynonymous SNV 0.093 0 24 hm5C_associated_SNPs_77683 0 0 0 0 1 SLC15A2 chr3:121613428 5'GT 121613428 Upstream 32bp
chr20 2290373 2290373 1 + C T rs7262519 2290370 + 2290350 2290390 41 GCGCATCACACAGACAAGTTCTCCAGCCAGGAGCTCATCTT GCGCATCACACAGACAAGTTCTCTAGCCAGGAGCTCATCTT < 41bp 0.756154057765923 0.530138197001331 0.9224957 0.8092239 prediction 0.452031721529184 Functional Loss - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2290370 chr20:2290373 synonymous SNV . 0 24 hm5C_associated_SNPs_77685 0 0 0 0 1 TGM3 chr20:2290303 3'AG 2290303 Downstream 71bp
chr8 91804159 91804159 1 + G A rs142780506 91804156 + 91804136 91804176 41 TCGCCGTCCTCCAACAACTCCTCGGAGGAGCTCAGCTCTGC TCGCCGTCCTCCAACAACTCCTCAGAGGAGCTCAGCTCTGC < 41bp 0.743883639882657 0.517869166852712 0.2259222 0.22836792 prediction 0.45202894605989 Functional Loss - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91804156 chr8:91804159 synonymous SNV . 0 24 hm5C_associated_SNPs_77688 0 0 0 0 1 NECAB1 chr8:91804213 5'GT 91804213 Upstream 55bp
chr20 56140474 56140474 1 + G A LGG 56140471 + 56140451 56140491 41 GCTACAACTTCGGCAAATACCTGGCCCACTGGCTTAGCATG GCTACAACTTCGGCAAATACCTGACCCACTGGCTTAGCATG < 41bp 0.726011853040506 0.485889676856461 0.58839315 0.11169678 prediction 0.452023706081011 Functional Loss - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56140471 chr20:56140474 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_77691 0 0 1 0 1 PCK1 chr20:56140406 3'AG 56140406 Downstream 69bp
chr12 85518199 85518199 1 + G T LUSC 85518196 + 85518176 85518216 41 TGTCAGAAGAGAGAAGACAGCAAGGCAAGCAGTATTCCCAC TGTCAGAAGAGAGAAGACAGCAATGCAAGCAGTATTCCCAC < 41bp 0.726011204292154 0.344692111710554 0.83079004 0.38048014 prediction 0.452022408584307 Functional Loss - LRRIQ1 ENSG00000133640 CDS Human protein_coding chr12:85518196 chr12:85518199 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_77693 0 0 0 0 1 LRRIQ1 chr12:85518297 5'GT 85518297 Upstream 99bp
chr10 46222883 46222883 1 + G A BLCA 46222880 + 46222860 46222900 41 TGCAGATGAACCGGACGACCCCCGACCAGGAGCTGGTGCCG TGCAGATGAACCGGACGACCCCCAACCAGGAGCTGGTGCCG < 41bp 0.789869509924441 0.563861316220443 0.1492286 0.026863009 prediction 0.452016387407996 Functional Loss - WASHC2C ENSG00000172661 CDS Human protein_coding chr10:46222880 chr10:46222883 nonsynonymous SNV 0.230 2 24 hm5C_associated_SNPs_77694 0 0 1 0 1 WASHC2C chr10:46222865 3'AG 46222865 Downstream 19bp
chr14 100793639 100793639 1 + G C SKCM 100793638 + 100793618 100793658 41 CACATCTGCCGGCTCCGGTACGGCAACCCTGACGCCAAGCC CACATCTGCCGGCTCCGGTACCGCAACCCTGACGCCAAGCC < 41bp 0.726002578352444 0.452091550489714 0.2116603 0.17614523 prediction 0.452005156704888 Functional Loss - SLC25A47 ENSG00000140107 CDS Human protein_coding chr14:100793638 chr14:100793639 nonsynonymous SNV 0.218 0 22 hm5C_associated_SNPs_77695 0 0 0 0 1 SLC25A47 chr14:100793707 5'GT 100793707 Upstream 69bp
chr7 158734663 158734663 1 + G A rs140787294 158734660 + 158734640 158734680 41 AGGCTGCACCAGCTGAGCTCCGCGTTTCCGCTCCTGCAGTG AGGCTGCACCAGCTGAGCTCCGCATTTCCGCTCCTGCAGTG < 41bp 0.789570386392924 0.563570667330793 0.38848445 0.28151667 prediction 0.451999438124262 Functional Loss - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158734660 chr7:158734663 synonymous SNV . 0 24 hm5C_associated_SNPs_77696 0 0 0 0 1 WDR60 chr7:158734616 3'AG 158734616 Downstream 48bp
chrX 70517280 70517280 1 + G T CESC 70517277 + 70517257 70517297 41 GGATGGAAGAGCTGCACAACCAAGAGGTGCAAAAACGAAAG GGATGGAAGAGCTGCACAACCAATAGGTGCAAAAACGAAAG < 41bp 0.926751243753298 0.700757755432385 0.83206254 0.14445221 prediction 0.451986976641824 Functional Loss - NONO ENSG00000147140 CDS Human protein_coding chrX:70517277 chrX:70517280 stopgain 1.000 1 24 hm5C_associated_SNPs_77698 0 0 1 0 2 NONO chrX:70517227 3'AG 70517227 Downstream 54bp
chrX 70517280 70517280 1 + G T CESC 70517277 + 70517257 70517297 41 GGATGGAAGAGCTGCACAACCAAGAGGTGCAAAAACGAAAG GGATGGAAGAGCTGCACAACCAATAGGTGCAAAAACGAAAG < 41bp 0.926751243753298 0.700757755432385 0.83206254 0.14445221 prediction 0.451986976641824 Functional Loss - NONO ENSG00000147140 CDS Human protein_coding chrX:70517277 chrX:70517280 stopgain 1.000 1 24 hm5C_associated_SNPs_77698 0 0 1 0 2 NONO chrX:70517311 5'GT 70517311 Upstream 32bp
chr21 40977088 40977088 1 + G A rs191400908 40977085 + 40977065 40977105 41 CCTCCGCACCCGTGCATCCACGCGTGGGCCCAGCCAGCAAG CCTCCGCACCCGTGCATCCACGCATGGGCCCAGCCAGCAAG < 41bp 0.757621100761025 0.531627939309993 0.17562392 0.04276234 prediction 0.451986322902064 Functional Loss - B3GALT5-AS1 ENSG00000183778 UTR5 Human protein_coding chr21:40977085 chr21:40977088 . . 0 24 hm5C_associated_SNPs_77699 0 0 0 0 2 B3GALT5-AS1 chr21:40977021 3'AG 40977021 Downstream 68bp
chr21 40977088 40977088 1 + G A rs191400908 40977085 + 40977065 40977105 41 CCTCCGCACCCGTGCATCCACGCGTGGGCCCAGCCAGCAAG CCTCCGCACCCGTGCATCCACGCATGGGCCCAGCCAGCAAG < 41bp 0.757621100761025 0.531627939309993 0.17562392 0.04276234 prediction 0.451986322902064 Functional Loss - B3GALT5-AS1 ENSG00000183778 UTR5 Human protein_coding chr21:40977085 chr21:40977088 . . 0 24 hm5C_associated_SNPs_77699 0 0 0 0 2 B3GALT5-AS1 chr21:40977152 5'GT 40977152 Upstream 65bp
chr2 220312722 220312722 1 + G T CESC 220312720 + 220312700 220312740 41 GTCCCTCAGAGCGGGTTGCGCAGGGAGGAGCCCGACCTTCA GTCCCTCAGAGCGGGTTGCGCATGGAGGAGCCCGACCTTCA < 41bp 0.725992994164907 0.389372281960401 0.9303956 0.49306187 prediction 0.451985988329815 Functional Loss - SPEG ENSG00000072195 CDS Human protein_coding chr2:220312720 chr2:220312722 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_77700 0 0 0 0 1 SPEG chr2:220312696 3'AG 220312696 Downstream 27bp
chr19 13080705 13080705 1 + G T COAD 13080703 + 13080683 13080723 41 GGCAGCTGGGGATGGGCAGGCTGCAGCGTGGGCAAGACGAG GGCAGCTGGGGATGGGCAGGCTTCAGCGTGGGCAAGACGAG < 41bp 0.906847186453843 0.680854896610136 0.6125762 0.6069989 prediction 0.451984579687414 Functional Loss - DAND5 ENSG00000179284 CDS Human protein_coding chr19:13080703 chr19:13080705 synonymous SNV . 0 23 hm5C_associated_SNPs_77701 0 0 0 0 1 DAND5 chr19:13080798 5'GT 13080798 Upstream 94bp
chr3 12861599 12861599 1 + C T UCEC 12861597 + 12861577 12861617 41 TCCTGCAGGTCGGCCACACACCCGGAGCACCGTCATCACAG TCCTGCAGGTCGGCCACACACCTGGAGCACCGTCATCACAG < 41bp 0.828698604002811 0.602707366848149 0.068321586 0.06825572 prediction 0.451982474309324 Functional Loss - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12861597 chr3:12861599 nonsynonymous SNV 0.991 3 23 hm5C_associated_SNPs_77702 0 0 0 0 2 CAND2 chr3:12861585 3'AG 12861585 Downstream 15bp
chr3 12861599 12861599 1 + C T UCEC 12861597 + 12861577 12861617 41 TCCTGCAGGTCGGCCACACACCCGGAGCACCGTCATCACAG TCCTGCAGGTCGGCCACACACCTGGAGCACCGTCATCACAG < 41bp 0.828698604002811 0.602707366848149 0.068321586 0.06825572 prediction 0.451982474309324 Functional Loss - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12861597 chr3:12861599 nonsynonymous SNV 0.991 3 23 hm5C_associated_SNPs_77702 0 0 0 0 2 CAND2 chr3:12861680 5'GT 12861680 Upstream 82bp
chr7 154875945 154875945 1 + G A PRAD 154875942 + 154875922 154875962 41 ACCTTCCAGCCAGAAGGGGACACGTGGCGGGAGCAGAAGGA ACCTTCCAGCCAGAAGGGGACACATGGCGGGAGCAGAAGGA < 41bp 0.728687772684211 0.502696887998969 0.4329174 0.41204977 prediction 0.451981769370483 Functional Loss - HTR5A ENSG00000157219 CDS Human protein_coding chr7:154875942 chr7:154875945 synonymous SNV . 0 24 hm5C_associated_SNPs_77703 0 0 0 0 1 HTR5A chr7:154875865 3'AG 154875865 Downstream 81bp
chr1 110038388 110038388 1 + G T CESC 110038386 + 110038366 110038406 41 CTATGTTCACAGTTCTGCCTCTGCATGGCTGAAGCCATCCT CTATGTTCACAGTTCTGCCTCTTCATGGCTGAAGCCATCCT < 41bp 0.725988174854509 0.416469649093908 0.30550042 0.16153932 prediction 0.451976349709018 Functional Loss - CYB561D1 ENSG00000174151 CDS Human protein_coding chr1:110038386 chr1:110038388 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_77704 0 0 1 0 2 CYB561D1 chr1:110038301 3'AG 110038301 Downstream 88bp
chr1 110038388 110038388 1 + G T CESC 110038386 + 110038366 110038406 41 CTATGTTCACAGTTCTGCCTCTGCATGGCTGAAGCCATCCT CTATGTTCACAGTTCTGCCTCTTCATGGCTGAAGCCATCCT < 41bp 0.725988174854509 0.416469649093908 0.30550042 0.16153932 prediction 0.451976349709018 Functional Loss - CYB561D1 ENSG00000174151 CDS Human protein_coding chr1:110038386 chr1:110038388 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_77704 0 0 1 0 2 CYB561D1 chr1:110038378 3'AG 110038378 Downstream 11bp
chrX 79277829 79277829 1 + A C COAD 79277825 + 79277805 79277845 41 GAAGCCTTGGTGGGGAGACCCAGCAAAAGAAAACTCCAAGA GAAGCCTTGGTGGGGAGACCCAGCCAAAGAAAACTCCAAGA < 41bp 0.935977681478462 0.709991889946894 0.90947104 0.2787214 prediction 0.451971583063137 Functional Loss - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79277825 chrX:79277829 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_77705 0 0 0 0 1 TBX22 chrX:79277767 3'AG 79277767 Downstream 63bp
chr17 40714723 40714723 1 + C T BLCA 40714721 + 40714701 40714741 41 CGCCTGGCCTCCATCCTGACCTCGGCGGCCCGGCTGGTGAA CGCCTGGCCTCCATCCTGACCTTGGCGGCCCGGCTGGTGAA < 41bp 0.809802780267994 0.58382052190241 0.24511829 0.096394986 prediction 0.451964516731168 Functional Loss - COASY ENSG00000068120 CDS Human protein_coding chr17:40714721 chr17:40714723 nonsynonymous SNV 0.944 1 23 hm5C_associated_SNPs_77707 0 0 1 0 1 COASY chr17:40714630 3'AG 40714630 Downstream 94bp
chr20 36962847 36962847 1 + G A SKCM 36962844 + 36962824 36962864 41 ATTTCCAGGTTGAATTGCTGCAGGATATCATGAACTACATT ATTTCCAGGTTGAATTGCTGCAGAATATCATGAACTACATT < 41bp 0.743812669993709 0.517832275332842 0.5825793 0.15649015 prediction 0.451960789321733 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36962844 chr20:36962847 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_77708 0 0 0 0 2 BPI chr20:36962832 3'AG 36962832 Downstream 16bp
chr20 36962847 36962847 1 + G A SKCM 36962844 + 36962824 36962864 41 ATTTCCAGGTTGAATTGCTGCAGGATATCATGAACTACATT ATTTCCAGGTTGAATTGCTGCAGAATATCATGAACTACATT < 41bp 0.743812669993709 0.517832275332842 0.5825793 0.15649015 prediction 0.451960789321733 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36962844 chr20:36962847 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_77708 0 0 0 0 2 BPI chr20:36962895 5'GT 36962895 Upstream 49bp
chr2 95943229 95943229 1 + T C STAD 95943228 + 95943208 95943248 41 ACCGGGACCGCCTCCTTGAGCTGCTGCAGGAGGCCAGGTGC ACCGGGACCGCCTCCTTGAGCCGCTGCAGGAGGCCAGGTGC < 41bp 0.754740385028987 0.528759995859589 0.8787383 0.8935315 prediction 0.451960778338794 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95943228 chr2:95943229 nonsynonymous SNV 0.042 2 22 hm5C_associated_SNPs_77709 0 0 0 0 2 PROM2 chr2:95943244 5'GT 95943244 Upstream 16bp
chr2 95943229 95943229 1 + T C STAD 95943228 + 95943208 95943248 41 ACCGGGACCGCCTCCTTGAGCTGCTGCAGGAGGCCAGGTGC ACCGGGACCGCCTCCTTGAGCCGCTGCAGGAGGCCAGGTGC < 41bp 0.754740385028987 0.528759995859589 0.8787383 0.8935315 prediction 0.451960778338794 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95943228 chr2:95943229 nonsynonymous SNV 0.042 2 22 hm5C_associated_SNPs_77709 0 0 0 0 2 PROM2 chr2:95943314 5'GT 95943314 Upstream 86bp
chr11 101018888 101018888 1 + C T rs10895072 101018886 + 101018866 101018906 41 TTTTGCAGAGATGGGGGTTTCACGATATTGCCCAGGCTGGT TTTTGCAGAGATGGGGGTTTCATGATATTGCCCAGGCTGGT < 41bp 0.768961868712734 0.542986442630888 0.18953457 0.165851 prediction 0.451950852163693 Functional Loss - PGR-AS1 ENSG00000255504 ncRNA_exonic Human transcribed_processed_pseudogene chr11:101018886 chr11:101018888 . . 0 23 hm5C_associated_SNPs_77711 0 0 0 0 2 PGR-AS1 chr11:101018874 3'AG 101018874 Downstream 15bp
chr11 101018888 101018888 1 + C T rs10895072 101018886 + 101018866 101018906 41 TTTTGCAGAGATGGGGGTTTCACGATATTGCCCAGGCTGGT TTTTGCAGAGATGGGGGTTTCATGATATTGCCCAGGCTGGT < 41bp 0.768961868712734 0.542986442630888 0.18953457 0.165851 prediction 0.451950852163693 Functional Loss - PGR-AS1 ENSG00000255504 ncRNA_exonic Human transcribed_processed_pseudogene chr11:101018886 chr11:101018888 . . 0 23 hm5C_associated_SNPs_77711 0 0 0 0 2 PGR-AS1 chr11:101018963 5'GT 101018963 Upstream 76bp
chr1 247712522 247712522 1 + G T LUAD 247712520 + 247712500 247712540 41 AATTATCTCCTGCGAAAACTCAGGTGAGTCTTGACTCTTGG AATTATCTCCTGCGAAAACTCATGTGAGTCTTGACTCTTGG < 41bp 0.725974192206583 0.394755959357317 0.9196313 0.4202031 prediction 0.451948384413165 Functional Loss - GCSAML ENSG00000169224 CDS Human protein_coding chr1:247712520 chr1:247712522 nonsynonymous SNV 0.907 0 23 hm5C_associated_SNPs_77712 0 0 0 0 1 GCSAML chr1:247712522 5'GT 247712522 Upstream 1bp
chr8 22138988 22138988 1 + G T LUAD 22138986 + 22138966 22139006 41 GGATCCAAAAGTGTTGGCGGCTGGGGACAGCAAGATGGCAG GGATCCAAAAGTGTTGGCGGCTTGGGACAGCAAGATGGCAG < 41bp 0.725972516609677 0.361210858998004 0.43631583 0.24392855 prediction 0.451945033219354 Functional Loss - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22138986 chr8:22138988 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_77715 0 0 0 0 2 PIWIL2 chr8:22138890 3'AG 22138890 Downstream 99bp
chr8 22138988 22138988 1 + G T LUAD 22138986 + 22138966 22139006 41 GGATCCAAAAGTGTTGGCGGCTGGGGACAGCAAGATGGCAG GGATCCAAAAGTGTTGGCGGCTTGGGACAGCAAGATGGCAG < 41bp 0.725972516609677 0.361210858998004 0.43631583 0.24392855 prediction 0.451945033219354 Functional Loss - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22138986 chr8:22138988 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_77715 0 0 0 0 2 PIWIL2 chr8:22139028 5'GT 22139028 Upstream 41bp
chr12 6422815 6422815 1 + C T BLCA 6422813 + 6422793 6422833 41 AGGATCCCAGTCGCCGACGCCTCCAGCAGTATGTCCCCTTT AGGATCCCAGTCGCCGACGCCTTCAGCAGTATGTCCCCTTT < 41bp 0.72597165335331 0.444650309118057 0.95695215 0.16669464 prediction 0.45194330670662 Functional Loss - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6422813 chr12:6422815 synonymous SNV . 0 23 hm5C_associated_SNPs_77716 0 0 0 0 1 PLEKHG6 chr12:6422795 3'AG 6422795 Downstream 21bp
chr1 176668661 176668661 1 + G A SKCM 176668658 + 176668638 176668678 41 CTGTGAGGTACCAGGTTCTCCGCGATCCCCCATTTGCCAGT CTGTGAGGTACCAGGTTCTCCGCAATCCCCCATTTGCCAGT < 41bp 0.770553401246895 0.544582649633333 0.62544036 0.19670576 prediction 0.451941503227124 Functional Loss - PAPPA2 ENSG00000116183 CDS Human protein_coding chr1:176668658 chr1:176668661 nonsynonymous SNV 0.239 1 24 hm5C_associated_SNPs_77717 0 0 0 0 1 PAPPA2 chr1:176668725 5'GT 176668725 Upstream 65bp
chr8 145724317 145724317 1 - C T COAD 145724320 - 145724300 145724340 41 CAGGAGCTGCTGCACCATCTCTCGGAAATCATCAATGCAGC CAGGAGCTGCTGCACCATCTCTCAGAAATCATCAATGCAGC < 41bp 0.769574139904317 0.543607786706357 0.1329071 0.10789743 prediction 0.451932706395921 Functional Loss - PPP1R16A ENSG00000160972 CDS Human other chr8:145724320 chr8:145724317 stopgain 0.246 0 24 hm5C_associated_SNPs_77718 0 0 1 0 1 PPP1R16A chr8:145724283 5'GT 145724283 Upstream 35bp
chr22 25017006 25017006 1 + G A rs114926965 25017003 + 25016983 25017023 41 GCCTTCTACAACGGCAGCCTCACGGCCCAGATTGTGAAGGA GCCTTCTACAACGGCAGCCTCACAGCCCAGATTGTGAAGGA < 41bp 0.725962630680935 0.490101059399998 0.26681387 0.11694002 prediction 0.451925261361871 Functional Loss - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25017003 chr22:25017006 synonymous SNV . 0 24 hm5C_associated_SNPs_77720 0 0 1 0 1 GGT1 chr22:25017037 5'GT 25017037 Upstream 32bp
chr6 43416866 43416866 1 + G C OV 43416862 + 43416842 43416882 41 CAGGTGGTCTGGATGGTGAGCTGGGTGAGGGGGGCCGGAGC CAGGTGGTCTGGATGGTGAGCTGGCTGAGGGGGGCCGGAGC < 41bp 0.725956880393056 0.42585237487839 0.908957 0.8768883 prediction 0.451913760786111 Functional Loss - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43416862 chr6:43416866 nonsynonymous SNV 0.653 3 25 hm5C_associated_SNPs_77725 0 0 1 0 2 ABCC10 chr6:43416845 3'AG 43416845 Downstream 22bp
chr6 43416866 43416866 1 + G C OV 43416862 + 43416842 43416882 41 CAGGTGGTCTGGATGGTGAGCTGGGTGAGGGGGGCCGGAGC CAGGTGGTCTGGATGGTGAGCTGGCTGAGGGGGGCCGGAGC < 41bp 0.725956880393056 0.42585237487839 0.908957 0.8768883 prediction 0.451913760786111 Functional Loss - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43416862 chr6:43416866 nonsynonymous SNV 0.653 3 25 hm5C_associated_SNPs_77725 0 0 1 0 2 ABCC10 chr6:43416942 5'GT 43416942 Upstream 77bp
chr14 69814652 69814652 1 + C T SKCM 69814650 + 69814630 69814670 41 GGGAAGTGCCTGGCTGCCACCTCCACCTTAATGTCCTCCCC GGGAAGTGCCTGGCTGCCACCTTCACCTTAATGTCCTCCCC < 41bp 0.725952536351034 0.437275148852016 0.8284196 0.0770385 prediction 0.451905072702067 Functional Loss - GALNT16 ENSG00000100626 CDS Human protein_coding chr14:69814650 chr14:69814652 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_77729 0 0 0 0 2 GALNT16 chr14:69814594 3'AG 69814594 Downstream 59bp
chr14 69814652 69814652 1 + C T SKCM 69814650 + 69814630 69814670 41 GGGAAGTGCCTGGCTGCCACCTCCACCTTAATGTCCTCCCC GGGAAGTGCCTGGCTGCCACCTTCACCTTAATGTCCTCCCC < 41bp 0.725952536351034 0.437275148852016 0.8284196 0.0770385 prediction 0.451905072702067 Functional Loss - GALNT16 ENSG00000100626 CDS Human protein_coding chr14:69814650 chr14:69814652 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_77729 0 0 0 0 2 GALNT16 chr14:69814719 5'GT 69814719 Upstream 68bp
chr5 154173201 154173201 1 + A C PRAD 154173197 + 154173177 154173217 41 ATTACAAATAGACATGAAGCCTGAAGTGCCCAGAGAGAAAC ATTACAAATAGACATGAAGCCTGACGTGCCCAGAGAGAAAC < 41bp 0.725942812160939 0.299656149732274 0.05861181 0.08574659 prediction 0.451885624321878 Functional Loss - LARP1 ENSG00000155506 CDS Human protein_coding chr5:154173197 chr5:154173201 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_77733 0 0 1 0 2 LARP1 chr5:154173155 3'AG 154173155 Downstream 47bp
chr5 154173201 154173201 1 + A C PRAD 154173197 + 154173177 154173217 41 ATTACAAATAGACATGAAGCCTGAAGTGCCCAGAGAGAAAC ATTACAAATAGACATGAAGCCTGACGTGCCCAGAGAGAAAC < 41bp 0.725942812160939 0.299656149732274 0.05861181 0.08574659 prediction 0.451885624321878 Functional Loss - LARP1 ENSG00000155506 CDS Human protein_coding chr5:154173197 chr5:154173201 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_77733 0 0 1 0 2 LARP1 chr5:154173283 5'GT 154173283 Upstream 83bp
chr11 32608616 32608616 1 + C T UCEC 32608614 + 32608594 32608634 41 GCTGAGATTTCAGAAGAGAACTCGGAAGGTGGACTTCATGT GCTGAGATTTCAGAAGAGAACTTGGAAGGTGGACTTCATGT < 41bp 0.836842548819838 0.610900736736115 0.3821867 0.27695477 prediction 0.451883624167447 Functional Loss - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32608614 chr11:32608616 nonsynonymous SNV 0.828 2 23 hm5C_associated_SNPs_77734 0 0 1 0 2 EIF3M chr11:32608558 3'AG 32608558 Downstream 59bp
chr11 32608616 32608616 1 + C T UCEC 32608614 + 32608594 32608634 41 GCTGAGATTTCAGAAGAGAACTCGGAAGGTGGACTTCATGT GCTGAGATTTCAGAAGAGAACTTGGAAGGTGGACTTCATGT < 41bp 0.836842548819838 0.610900736736115 0.3821867 0.27695477 prediction 0.451883624167447 Functional Loss - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32608614 chr11:32608616 nonsynonymous SNV 0.828 2 23 hm5C_associated_SNPs_77734 0 0 1 0 2 EIF3M chr11:32608690 5'GT 32608690 Upstream 75bp
chr15 25436459 25436459 1 + G T LUSC 25436457 + 25436437 25436477 41 GCCCCTGGTGAGCTGAAGCTCAGGCCCTTCCTGGCACCCTG GCCCCTGGTGAGCTGAAGCTCATGCCCTTCCTGGCACCCTG < 41bp 0.725936988666799 0.387324176535459 0.8909071 0.7624356 prediction 0.451873977333598 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25436457 chr15:25436459 . . 0 23 hm5C_associated_SNPs_77735 0 0 0 0 1 SNHG14 chr15:25436497 5'GT 25436497 Upstream 39bp
chr4 169798935 169798935 1 + C T UCEC 169798933 + 169798913 169798953 41 ACTGGAGCAGGAGGCCGGCGCTCGGCAGCCTCCGCCAGCCC ACTGGAGCAGGAGGCCGGCGCTTGGCAGCCTCCGCCAGCCC < 41bp 0.729607562333867 0.503677907209078 0.35983086 0.38769212 prediction 0.451859310249578 Functional Loss - PALLD ENSG00000129116 CDS Human protein_coding chr4:169798933 chr4:169798935 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_77740 0 0 0 0 1 PALLD chr4:169798874 3'AG 169798874 Downstream 62bp
chr19 35550894 35550894 1 + C T CESC 35550892 + 35550872 35550912 41 CAGAGGCTGCTGGAGGTCATCTCCGTGTGGTGAGGAGGGCA CAGAGGCTGCTGGAGGTCATCTTCGTGTGGTGAGGAGGGCA < 41bp 0.725929380250899 0.448144823812233 0.87560594 0.34502107 prediction 0.451858760501798 Functional Loss - HPN ENSG00000105707 CDS Human protein_coding chr19:35550892 chr19:35550894 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_77741 0 0 1 0 1 HPN chr19:35550900 5'GT 35550900 Upstream 7bp
chr14 23235906 23235906 1 + G A HNSC 23235903 + 23235883 23235923 41 CGCAAAAGCAAGTCCTCTTCCGGGCAAAATGGCGATGGGAC CGCAAAAGCAAGTCCTCTTCCGGACAAAATGGCGATGGGAC < 41bp 0.776825198100377 0.550898041593175 0.8744799 0.3392464 prediction 0.451854313014403 Functional Loss - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23235903 chr14:23235906 nonsynonymous SNV 0.836 0 24 hm5C_associated_SNPs_77742 0 0 1 0 1 OXA1L chr14:23235973 5'GT 23235973 Upstream 68bp
chr17 7286770 7286770 1 + C T rs111534860 7286768 + 7286748 7286788 41 TTGGAGGTTTTGCCCCTGAGCACAAGGAGCCCACCCTGCCC TTGGAGGTTTTGCCCCTGAGCATAAGGAGCCCACCCTGCCC < 41bp 0.795267976690054 0.569341261046089 0.27831507 0.3292275 prediction 0.451853431287929 Functional Loss - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7286768 chr17:7286770 synonymous SNV . 0 23 hm5C_associated_SNPs_77743 0 0 1 0 1 TNK1 chr17:7286744 3'AG 7286744 Downstream 27bp
chr3 64179941 64179941 1 + C T rs7614007 64179939 + 64179919 64179959 41 CTTTTTCACTCTGCTGAATACTCGACCATATTACAAGGCAA CTTTTTCACTCTGCTGAATACTTGACCATATTACAAGGCAA < 41bp 0.725925211333486 0.489913588497301 0.22931233 0.09163445 prediction 0.451850422666972 Functional Loss - PRICKLE2-AS3 ENSG00000226017 ncRNA_exonic Human antisense chr3:64179939 chr3:64179941 . . 0 23 hm5C_associated_SNPs_77744 0 0 0 0 2 PRICKLE2-AS3 chr3:64179866 3'AG 64179866 Downstream 76bp
chr3 64179941 64179941 1 + C T rs7614007 64179939 + 64179919 64179959 41 CTTTTTCACTCTGCTGAATACTCGACCATATTACAAGGCAA CTTTTTCACTCTGCTGAATACTTGACCATATTACAAGGCAA < 41bp 0.725925211333486 0.489913588497301 0.22931233 0.09163445 prediction 0.451850422666972 Functional Loss - PRICKLE2-AS3 ENSG00000226017 ncRNA_exonic Human antisense chr3:64179939 chr3:64179941 . . 0 23 hm5C_associated_SNPs_77744 0 0 0 0 2 PRICKLE2-AS3 chr3:64179988 5'GT 64179988 Upstream 48bp
chr17 26818479 26818479 1 + C T UCEC 26818477 + 26818457 26818497 41 AATGGGCAGGCCCTCCCTGTCACGTCTGCCTCTTCGGAGGG AATGGGCAGGCCCTCCCTGTCATGTCTGCCTCTTCGGAGGG < 41bp 0.780581655344695 0.554657218799837 0.16826978 0.22100586 prediction 0.451848873089716 Functional Loss - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26818477 chr17:26818479 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_77745 0 0 0 0 1 SLC13A2 chr17:26818455 3'AG 26818455 Downstream 25bp
chr7 128483328 128483328 1 + G A SKCM 128483325 + 128483305 128483345 41 ACATCAAGGTGGACCCATCCCACGATGCCAGCAAAGTCAAG ACATCAAGGTGGACCCATCCCACAATGCCAGCAAAGTCAAG < 41bp 0.745706406369402 0.519783188650093 0.065157294 0.025002629 prediction 0.451846435438618 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128483325 chr7:128483328 nonsynonymous SNV 0.975 4 24 hm5C_associated_SNPs_77746 0 0 0 0 2 FLNC chr7:128483283 3'AG 128483283 Downstream 46bp
chr7 128483328 128483328 1 + G A SKCM 128483325 + 128483305 128483345 41 ACATCAAGGTGGACCCATCCCACGATGCCAGCAAAGTCAAG ACATCAAGGTGGACCCATCCCACAATGCCAGCAAAGTCAAG < 41bp 0.745706406369402 0.519783188650093 0.065157294 0.025002629 prediction 0.451846435438618 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128483325 chr7:128483328 nonsynonymous SNV 0.975 4 24 hm5C_associated_SNPs_77746 0 0 0 0 2 FLNC chr7:128483373 5'GT 128483373 Upstream 46bp
chr4 158257612 158257612 1 + C T PRAD 158257610 + 158257590 158257630 41 TCTCAAAGCCCTTCATGAGCCTCGGGATATCTATCATGATC TCTCAAAGCCCTTCATGAGCCTTGGGATATCTATCATGATC < 41bp 0.725922757301463 0.44664429924031 0.020643055 0.018746078 prediction 0.451845514602926 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158257610 chr4:158257612 synonymous SNV . 0 23 hm5C_associated_SNPs_77747 0 0 0 1 1 GRIA2 chr4:158257529 3'AG 158257529 Downstream 84bp
chr1 150470035 150470035 1 + G A OV 150470032 + 150470012 150470052 41 TATGCCCATCGTGGTTTCTCCGAGGTGAAAACTCCCACACT TATGCCCATCGTGGTTTCTCCGAAGTGAAAACTCCCACACT < 41bp 0.798107328310751 0.57219678634534 0.92315483 0.42218044 prediction 0.451821083930823 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150470032 chr1:150470035 synonymous SNV . 0 24 hm5C_associated_SNPs_77758 0 0 1 0 1 TARS2 chr1:150470006 3'AG 150470006 Downstream 30bp
chr15 40477831 40477831 1 + G A rs1801376 40477828 + 40477808 40477848 41 TCCATATGTGGAAGAGACTGCACGACAGCCAGTTATGTGAG TCCATATGTGGAAGAGACTGCACAACAGCCAGTTATGTGAG < 41bp 0.773545541212655 0.547636719411739 0.2999118 0.19520202 prediction 0.451817643601833 Functional Loss - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40477828 chr15:40477831 nonsynonymous SNV 0.977 0 24 hm5C_associated_SNPs_77759 2 0 1 0 2 BUB1B chr15:40477752 3'AG 40477752 Downstream 80bp
chr15 40477831 40477831 1 + G A rs1801376 40477828 + 40477808 40477848 41 TCCATATGTGGAAGAGACTGCACGACAGCCAGTTATGTGAG TCCATATGTGGAAGAGACTGCACAACAGCCAGTTATGTGAG < 41bp 0.773545541212655 0.547636719411739 0.2999118 0.19520202 prediction 0.451817643601833 Functional Loss - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40477828 chr15:40477831 nonsynonymous SNV 0.977 0 24 hm5C_associated_SNPs_77759 2 0 1 0 2 BUB1B chr15:40477843 5'GT 40477843 Upstream 13bp
chr19 42580354 42580354 1 + G C rs529803887 42580350 + 42580330 42580370 41 ACGGAGCAGGCGAGAGGCGACGGCGAGAGCTAGAGCGGGCG ACGGAGCAGGCGAGAGGCGACGGCCAGAGCTAGAGCGGGCG < 41bp 0.72590810290569 0.442135366479378 0.5632505 0.432699 prediction 0.45181620581138 Functional Loss - ZNF574 ENSG00000105732 UTR5 Human protein_coding chr19:42580350 chr19:42580354 . . 0 25 hm5C_associated_SNPs_77760 0 0 1 0 1 ZNF574 chr19:42580438 5'GT 42580438 Upstream 85bp
chr19 15795987 15795987 1 + C T UCEC 15795985 + 15795965 15796005 41 TGCAAGAGCTTCTGAAGGACCGCGATCCTAAAGAGATTGAA TGCAAGAGCTTCTGAAGGACCGTGATCCTAAAGAGATTGAA < 41bp 0.83732469251934 0.611419673207101 0.24120575 0.19562653 prediction 0.451810038624477 Functional Loss - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15795985 chr19:15795987 synonymous SNV . 0 23 hm5C_associated_SNPs_77763 0 0 1 0 1 CYP4F12 chr19:15796007 5'GT 15796007 Upstream 21bp
chr12 6935455 6935455 1 + G T PRAD 6935453 + 6935433 6935473 41 CAGGGAGCCGGGACCCCGCCCAGGTGAAGCTGCTGCCTGGA CAGGGAGCCGGGACCCCGCCCATGTGAAGCTGCTGCCTGGA < 41bp 0.725904970912203 0.362679362749466 0.9264035 0.37343764 prediction 0.451809941824405 Functional Loss - GPR162 ENSG00000250510 CDS Human protein_coding chr12:6935453 chr12:6935455 nonsynonymous SNV 0.969 0 23 hm5C_associated_SNPs_77764 0 0 0 0 2 GPR162 chr12:6935361 3'AG 6935361 Downstream 95bp
chr12 6935455 6935455 1 + G T PRAD 6935453 + 6935433 6935473 41 CAGGGAGCCGGGACCCCGCCCAGGTGAAGCTGCTGCCTGGA CAGGGAGCCGGGACCCCGCCCATGTGAAGCTGCTGCCTGGA < 41bp 0.725904970912203 0.362679362749466 0.9264035 0.37343764 prediction 0.451809941824405 Functional Loss - GPR162 ENSG00000250510 CDS Human protein_coding chr12:6935453 chr12:6935455 nonsynonymous SNV 0.969 0 23 hm5C_associated_SNPs_77764 0 0 0 0 2 GPR162 chr12:6935518 5'GT 6935518 Upstream 64bp
chr2 37471013 37471013 1 + C T SKCM 37471010 + 37470990 37471030 41 GTTATTTTGTGTTTAGAAAACACCACAGGGATGGCGAGAAG GTTATTTTGTGTTTAGAAAACACTACAGGGATGGCGAGAAG < 41bp 0.72590408834659 0.494969262455853 0.032268047 0.17696449 prediction 0.45180817669318 Functional Loss - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37471010 chr2:37471013 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_77767 0 0 1 0 1 NDUFAF7 chr2:37471006 3'AG 37471006 Downstream 8bp
chr18 39575919 39575919 1 + C T STAD 39575917 + 39575897 39575937 41 TAAGAAGTGGACCTTCTGACCACGATCTGAAACCCAATGCT TAAGAAGTGGACCTTCTGACCATGATCTGAAACCCAATGCT < 41bp 0.725902882330555 0.460060641572863 0.3090036 0.2937609 prediction 0.45180576466111 Functional Loss - PIK3C3 ENSG00000078142 CDS Human protein_coding chr18:39575917 chr18:39575919 synonymous SNV . 0 23 hm5C_associated_SNPs_77768 0 0 1 0 2 PIK3C3 chr18:39575854 3'AG 39575854 Downstream 66bp
chr18 39575919 39575919 1 + C T STAD 39575917 + 39575897 39575937 41 TAAGAAGTGGACCTTCTGACCACGATCTGAAACCCAATGCT TAAGAAGTGGACCTTCTGACCATGATCTGAAACCCAATGCT < 41bp 0.725902882330555 0.460060641572863 0.3090036 0.2937609 prediction 0.45180576466111 Functional Loss - PIK3C3 ENSG00000078142 CDS Human protein_coding chr18:39575917 chr18:39575919 synonymous SNV . 0 23 hm5C_associated_SNPs_77768 0 0 1 0 2 PIK3C3 chr18:39575958 5'GT 39575958 Upstream 40bp
chr8 32611911 32611911 1 + A C ESCA 32611907 + 32611887 32611927 41 CAGAGGCGGAGGAGCTGTACCAGAAGAGAGTGCTGACCATA CAGAGGCGGAGGAGCTGTACCAGACGAGAGTGCTGACCATA < 41bp 0.725901775626701 0.426929061086852 0.83064675 0.7812587 prediction 0.451803551253402 Functional Loss - NRG1 ENSG00000157168 CDS Human protein_coding chr8:32611907 chr8:32611911 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_77769 0 0 0 0 1 NRG1 chr8:32611890 3'AG 32611890 Downstream 22bp
chr22 45822054 45822054 1 + T C UCEC 45822053 + 45822033 45822073 41 AGCAGCAAATCCAGGAGAAGCTGGTGACTGCCCCGCCCCTT AGCAGCAAATCCAGGAGAAGCCGGTGACTGCCCCGCCCCTT < 41bp 0.738088469502967 0.512190355546173 0.9171374 0.93568 prediction 0.451796227913589 Functional Loss - RIBC2 ENSG00000128408 CDS Human protein_coding chr22:45822053 chr22:45822054 nonsynonymous SNV 0.989 0 22 hm5C_associated_SNPs_77771 0 0 0 0 1 RIBC2 chr22:45822055 5'GT 45822055 Upstream 2bp
chr18 47107814 47107814 1 + G T LUAD 47107811 + 47107791 47107831 41 CAGAGGTGGTAAAATGTGAGCATGAGCGAGCCGTCCACCTC CAGAGGTGGTAAAATGTGAGCATTAGCGAGCCGTCCACCTC < 41bp 0.725897626677326 0.325097083810791 0.23439112 0.059716195 prediction 0.451795253354652 Functional Loss - LIPG ENSG00000101670 CDS Human protein_coding chr18:47107811 chr18:47107814 stopgain 0.619 1 24 hm5C_associated_SNPs_77772 0 0 0 0 1 LIPG chr18:47107785 3'AG 47107785 Downstream 30bp
chr2 160084388 160084388 1 + G A CESC 160084385 + 160084365 160084405 41 GTATGCCTTAAGAAAGTTTCCTCGAGAAGGATTCGGAGAGG GTATGCCTTAAGAAAGTTTCCTCAAGAAGGATTCGGAGAGG < 41bp 0.726872819106426 0.500976974844854 0.2847885 0.029851854 prediction 0.451791688523143 Functional Loss - TANC1 ENSG00000115183 CDS Human protein_coding chr2:160084385 chr2:160084388 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_77773 0 0 1 0 1 TANC1 chr2:160084330 3'AG 160084330 Downstream 59bp
chr7 112090758 112090758 1 + G T UCEC 112090755 + 112090735 112090775 41 CGTCCCACGATGCCGAAGAACAAGAAGCGGAACACTCCCCA CGTCCCACGATGCCGAAGAACAATAAGCGGAACACTCCCCA < 41bp 0.882712494124287 0.656823747278064 0.4943858 0.2815259 prediction 0.451777493692446 Functional Loss - IFRD1 ENSG00000006652 CDS Human protein_coding chr7:112090755 chr7:112090758 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_77776 0 0 1 0 1 IFRD1 chr7:112090837 5'GT 112090837 Upstream 80bp
chr1 89849690 89849690 1 + G A COAD 89849687 + 89849667 89849707 41 AGGAGGCAGCTGAGAAGGAACAGGAACTTTTAAAACAGAAA AGGAGGCAGCTGAGAAGGAACAGAAACTTTTAAAACAGAAA < 41bp 0.72586835251573 0.492623883604463 0.541217 0.37386647 prediction 0.45173670503146 Functional Loss - GBP6 ENSG00000183347 CDS Human protein_coding chr1:89849687 chr1:89849690 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_77783 0 0 0 0 1 GBP6 chr1:89849652 3'AG 89849652 Downstream 39bp
chr20 61468560 61468560 1 + C T GBM 61468558 + 61468538 61468578 41 CTCCATTGGTCACCCTGGCGCTCGAGGACCCCCTGGATACC CTCCATTGGTCACCCTGGCGCTTGAGGACCCCCTGGATACC < 41bp 0.82782544386994 0.601960104263974 0.081567585 0.054389745 prediction 0.451730679211933 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61468558 chr20:61468560 stopgain 0.455 1 23 hm5C_associated_SNPs_77786 0 0 1 0 1 COL9A3 chr20:61468617 5'GT 61468617 Upstream 58bp
chr15 45444551 45444551 1 + G C LUSC 45444547 + 45444527 45444567 41 CCGCGTGGGAATCATCCTGTCGCGGGGCACAGCAGCCAGCA CCGCGTGGGAATCATCCTGTCGCGCGGCACAGCAGCCAGCA < 41bp 0.858070533196792 0.632206982264235 0.49310812 0.107355416 prediction 0.451727101865115 Functional Loss - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45444547 chr15:45444551 synonymous SNV . 0 25 hm5C_associated_SNPs_77787 0 0 0 0 1 DUOX1 chr15:45444484 3'AG 45444484 Downstream 68bp
chr7 881705 881705 1 + G A STAD 881702 + 881682 881722 41 CAGCCTGCAGGATGCTGTGACTCGACGGCCTCCTGTATTGG CAGCCTGCAGGATGCTGTGACTCAACGGCCTCCTGTATTGG < 41bp 0.766369598034587 0.540508493108341 0.8386269 0.9302151 prediction 0.451722209852491 Functional Loss - SUN1 ENSG00000164828 CDS Human protein_coding chr7:881702 chr7:881705 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_77788 0 0 1 0 1 SUN1 chr7:881767 5'GT 881767 Upstream 63bp
chr5 134033600 134033600 1 + C T COAD 134033598 + 134033578 134033618 41 TTCTCTTCCAGGTTGTATTTCTCGGTATTCAGCAGGTAGTG TTCTCTTCCAGGTTGTATTTCTTGGTATTCAGCAGGTAGTG < 41bp 0.725851218230339 0.438394226298307 0.09763068 0.09826043 prediction 0.451702436460678 Functional Loss - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134033598 chr5:134033600 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_77794 0 0 1 0 1 SEC24A chr5:134033589 3'AG 134033589 Downstream 12bp
chr5 134033601 134033601 1 + G A GBM 134033598 + 134033578 134033618 41 TTCTCTTCCAGGTTGTATTTCTCGGTATTCAGCAGGTAGTG TTCTCTTCCAGGTTGTATTTCTCAGTATTCAGCAGGTAGTG < 41bp 0.725851218230339 0.486412184180449 0.09763068 0.094216645 prediction 0.451702436460678 Functional Loss - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134033598 chr5:134033601 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_77795 0 0 1 0 1 SEC24A chr5:134033589 3'AG 134033589 Downstream 13bp
chr19 17392883 17392883 1 + T C COAD 17392882 + 17392862 17392902 41 GCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCGCGGACCCT GCAGGGCAGTAGAGGAGCTGCCGCGCTGCGGCGCGGACCCT < 41bp 0.758823984214204 0.532973784708407 0.80689895 0.4126323 prediction 0.451700399011593 Functional Loss - ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17392882 chr19:17392883 nonsynonymous SNV 0.716 4 22 hm5C_associated_SNPs_77796 0 0 1 0 2 ANKLE1 chr19:17392866 3'AG 17392866 Downstream 18bp
chr19 17392883 17392883 1 + T C COAD 17392882 + 17392862 17392902 41 GCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCGCGGACCCT GCAGGGCAGTAGAGGAGCTGCCGCGCTGCGGCGCGGACCCT < 41bp 0.758823984214204 0.532973784708407 0.80689895 0.4126323 prediction 0.451700399011593 Functional Loss - ANKLE1 ENSG00000160117 CDS Human other chr19:17392882 chr19:17392883 nonsynonymous SNV 0.716 4 22 hm5C_associated_SNPs_77796 0 0 1 0 2 ANKLE1 chr19:17392871 3'AG 17392871 Downstream 13bp
chr15 74425158 74425158 1 + G A GBM 74425155 + 74425135 74425175 41 CTAGGAGTGGCCGGATCATGCCCGGAGCCGTGCGCCTGCGT CTAGGAGTGGCCGGATCATGCCCAGAGCCGTGCGCCTGCGT < 41bp 0.785827202571414 0.559981355703999 0.8590472 0.24247482 prediction 0.451691693734829 Functional Loss - ISLR2 ENSG00000167178 CDS Human protein_coding chr15:74425155 chr15:74425158 synonymous SNV . 0 24 hm5C_associated_SNPs_77797 0 0 0 0 1 ISLR2 chr15:74425088 3'AG 74425088 Downstream 71bp
chr10 71689831 71689831 1 + C T UCEC 71689829 + 71689809 71689849 41 GACTGCCAGGCCCTCCAGGACACGATGGGGAAAAGGTATGA GACTGCCAGGCCCTCCAGGACATGATGGGGAAAAGGTATGA < 41bp 0.725845345198866 0.448744577006589 0.12476206 0.33336598 prediction 0.451690690397732 Functional Loss - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71689829 chr10:71689831 synonymous SNV . 0 23 hm5C_associated_SNPs_77798 0 0 0 0 2 COL13A1 chr10:71689799 3'AG 71689799 Downstream 33bp
chr10 71689831 71689831 1 + C T UCEC 71689829 + 71689809 71689849 41 GACTGCCAGGCCCTCCAGGACACGATGGGGAAAAGGTATGA GACTGCCAGGCCCTCCAGGACATGATGGGGAAAAGGTATGA < 41bp 0.725845345198866 0.448744577006589 0.12476206 0.33336598 prediction 0.451690690397732 Functional Loss - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71689829 chr10:71689831 synonymous SNV . 0 23 hm5C_associated_SNPs_77798 0 0 0 0 2 COL13A1 chr10:71689843 5'GT 71689843 Upstream 13bp
chr20 61595023 61595023 1 + C T UCEC 61595021 + 61595001 61595041 41 CCTTCTTCGAGGAGACCTTCCCCGACGCCAAGGTGAGTCGG CCTTCTTCGAGGAGACCTTCCCTGACGCCAAGGTGAGTCGG < 41bp 0.725844253007777 0.452808983732425 0.2828973 0.25353545 prediction 0.451688506015553 Functional Loss - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61595021 chr20:61595023 synonymous SNV . 0 23 hm5C_associated_SNPs_77800 0 0 1 0 2 SLC17A9 chr20:61594936 3'AG 61594936 Downstream 88bp
chr20 61595023 61595023 1 + C T UCEC 61595021 + 61595001 61595041 41 CCTTCTTCGAGGAGACCTTCCCCGACGCCAAGGTGAGTCGG CCTTCTTCGAGGAGACCTTCCCTGACGCCAAGGTGAGTCGG < 41bp 0.725844253007777 0.452808983732425 0.2828973 0.25353545 prediction 0.451688506015553 Functional Loss - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61595021 chr20:61595023 synonymous SNV . 0 23 hm5C_associated_SNPs_77800 0 0 1 0 2 SLC17A9 chr20:61595032 5'GT 61595032 Upstream 10bp
chr14 99976510 99976510 1 + C T ESCA 99976508 + 99976488 99976528 41 CTGCAGACCGGAAGCCTCCCCTCGCTGCTGCCTTAGGTGAG CTGCAGACCGGAAGCCTCCCCTTGCTGCTGCCTTAGGTGAG < 41bp 0.725842688053704 0.453917205173814 0.75499886 0.28395066 prediction 0.451685376107408 Functional Loss - CCNK ENSG00000090061 CDS Human protein_coding chr14:99976508 chr14:99976510 synonymous SNV . 0 23 hm5C_associated_SNPs_77801 0 0 1 0 1 CCNK chr14:99976494 3'AG 99976494 Downstream 17bp
chr3 137729278 137729278 1 + G A SKCM 137729275 + 137729255 137729295 41 GCAGGCCCTATTTCACCATCCTGGGACTTCCAGGTAGGCAC GCAGGCCCTATTTCACCATCCTGAGACTTCCAGGTAGGCAC < 41bp 0.779569189081597 0.553726580886688 0.81821597 0.29363853 prediction 0.451685216389818 Functional Loss - CLDN18 ENSG00000066405 CDS Human protein_coding chr3:137729275 chr3:137729278 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_77802 0 0 0 0 1 CLDN18 chr3:137729287 5'GT 137729287 Upstream 10bp
chr15 90802152 90802152 1 + G A CESC 90802149 + 90802129 90802169 41 TCCAGTGCTACCGACAGCCACGAGAATCTAGGTGTGCTAGG TCCAGTGCTACCGACAGCCACGAAAATCTAGGTGTGCTAGG < 41bp 0.790181536660489 0.564339282267539 0.8673916 0.35514197 prediction 0.451684508785899 Functional Loss - TTLL13P ENSG00000213471 CDS Human protein_coding chr15:90802149 chr15:90802152 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_77803 0 0 0 0 1 TTLL13P chr15:90802159 5'GT 90802159 Upstream 8bp
chrX 99925838 99925838 1 + A C THYM 99925834 + 99925814 99925854 41 CGCCTCACTCGCTCCTACTTCAACATGGTGTTGATTGACAA CGCCTCACTCGCTCCTACTTCAACCTGGTGTTGATTGACAA < 41bp 0.725841595024186 0.30674884313825 0.18026295 0.35807073 prediction 0.451683190048373 Functional Loss - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99925834 chrX:99925838 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_77804 0 0 1 0 1 SRPX2 chrX:99925804 3'AG 99925804 Downstream 35bp
chr17 7578443 7578443 1 - A G HNSC 7578444 - 7578424 7578464 41 CGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACAT CGCGTCCGCGCCATGGCCATCCACAAGCAGTCACAGCACAT < 41bp 0.791531440292176 0.565695295336961 0.9150708 0.15695018 prediction 0.45167228991043 Functional Loss - TP53 ENSG00000141510 CDS Human protein_coding chr17:7578444 chr17:7578443 nonsynonymous SNV 0.690 5 22 hm5C_associated_SNPs_77807 14 0 1 0 1 TP53 chr17:7578371 5'GT 7578371 Upstream 73bp
chr19 54395881 54395881 1 + G C STAD 54395877 + 54395857 54395897 41 TTTGGCGTCTCGGAGCTGCTCAAGGCGCCCGTGGATGGCTG TTTGGCGTCTCGGAGCTGCTCAAGCCGCCCGTGGATGGCTG < 41bp 0.867803410777299 0.641969887086056 0.8990723 0.71005535 prediction 0.451667047382485 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54395877 chr19:54395881 nonsynonymous SNV 0.727 0 25 hm5C_associated_SNPs_77810 0 0 0 0 1 PRKCG chr19:54395897 5'GT 54395897 Upstream 17bp
chr9 4685143 4685143 1 + G A ACC 4685140 + 4685120 4685160 41 TGGAGCACGGATGCCATTAGCAAGGATGTTTTTAATAAGGT TGGAGCACGGATGCCATTAGCAAAGATGTTTTTAATAAGGT < 41bp 0.725831760544146 0.494062340929579 0.7850348 0.53362375 prediction 0.451663521088292 Functional Loss - CDC37L1 ENSG00000106993 CDS Human protein_coding chr9:4685140 chr9:4685143 synonymous SNV . 0 24 hm5C_associated_SNPs_77813 0 0 1 0 1 CDC37L1 chr9:4685158 5'GT 4685158 Upstream 16bp
chr2 228212087 228212087 1 + G T HNSC 228212084 + 228212064 228212104 41 ACCAGCAGATCTTGGATGTGCTGGATGAAAATCGCAGGTGA ACCAGCAGATCTTGGATGTGCTGTATGAAAATCGCAGGTGA < 41bp 0.913321140014984 0.687492806337906 0.52003235 0.26735312 prediction 0.451656667354156 Functional Loss - MFF ENSG00000168958 CDS Human protein_coding chr2:228212084 chr2:228212087 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_77814 0 0 1 0 2 MFF chr2:228212059 3'AG 228212059 Downstream 29bp
chr2 228212087 228212087 1 + G T HNSC 228212084 + 228212064 228212104 41 ACCAGCAGATCTTGGATGTGCTGGATGAAAATCGCAGGTGA ACCAGCAGATCTTGGATGTGCTGTATGAAAATCGCAGGTGA < 41bp 0.913321140014984 0.687492806337906 0.52003235 0.26735312 prediction 0.451656667354156 Functional Loss - MFF ENSG00000168958 CDS Human protein_coding chr2:228212084 chr2:228212087 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_77814 0 0 1 0 2 MFF chr2:228212100 5'GT 228212100 Upstream 14bp
chr12 109876379 109876379 1 + C T UCEC 109876377 + 109876357 109876397 41 CCACTGGCGTGGGGCCCTGGCTCGGAAGGCAATCCAAAGGA CCACTGGCGTGGGGCCCTGGCTTGGAAGGCAATCCAAAGGA < 41bp 0.850338069966473 0.624510025395355 0.07620904 0.07507178 prediction 0.451656089142235 Functional Loss - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109876377 chr12:109876379 nonsynonymous SNV 0.975 3 23 hm5C_associated_SNPs_77815 0 0 0 0 2 MYO1H chr12:109876341 3'AG 109876341 Downstream 39bp
chr12 109876379 109876379 1 + C T UCEC 109876377 + 109876357 109876397 41 CCACTGGCGTGGGGCCCTGGCTCGGAAGGCAATCCAAAGGA CCACTGGCGTGGGGCCCTGGCTTGGAAGGCAATCCAAAGGA < 41bp 0.850338069966473 0.624510025395355 0.07620904 0.07507178 prediction 0.451656089142235 Functional Loss - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109876377 chr12:109876379 nonsynonymous SNV 0.975 3 23 hm5C_associated_SNPs_77815 0 0 0 0 2 MYO1H chr12:109876425 5'GT 109876425 Upstream 47bp
chr15 65937980 65937980 1 + C T rs191146484 65937978 + 65937958 65937998 41 CCAGCCAAGCTCCCTGCGGTCACGGTCACACCAGCCCCTGT CCAGCCAAGCTCCCTGCGGTCATGGTCACACCAGCCCCTGT < 41bp 0.725819889971279 0.447756627768751 0.38169265 0.543939 prediction 0.451639779942558 Functional Loss - SLC24A1 ENSG00000074621 CDS Human protein_coding chr15:65937978 chr15:65937980 nonsynonymous SNV 0.980 2 23 hm5C_associated_SNPs_77818 1 0 0 0 2 SLC24A1 chr15:65937950 3'AG 65937950 Downstream 31bp
chr15 65937980 65937980 1 + C T rs191146484 65937978 + 65937958 65937998 41 CCAGCCAAGCTCCCTGCGGTCACGGTCACACCAGCCCCTGT CCAGCCAAGCTCCCTGCGGTCATGGTCACACCAGCCCCTGT < 41bp 0.725819889971279 0.447756627768751 0.38169265 0.543939 prediction 0.451639779942558 Functional Loss - SLC24A1 ENSG00000074621 CDS Human protein_coding chr15:65937978 chr15:65937980 nonsynonymous SNV 0.980 2 23 hm5C_associated_SNPs_77818 1 0 0 0 2 SLC24A1 chr15:65938041 5'GT 65938041 Upstream 62bp
chr15 42632014 42632014 1 + G A rs149924895 42632011 + 42631991 42632031 41 GCTCTTTGGGGAGGAACACACCCGACTCATCCGAGAAGCCA GCTCTTTGGGGAGGAACACACCCAACTCATCCGAGAAGCCA < 41bp 0.771094360846854 0.545278934672834 0.18686825 0.22526759 prediction 0.45163085234804 Functional Loss - GANC ENSG00000214013 CDS Human protein_coding chr15:42632011 chr15:42632014 nonsynonymous SNV 0.276 1 24 hm5C_associated_SNPs_77821 0 0 0 0 1 GANC chr15:42632110 5'GT 42632110 Upstream 97bp
chr8 67047381 67047381 1 + G A LUSC 67047378 + 67047358 67047398 41 GCTCCCCTCACTCATGTGTTCCAGAGACAGAAGGTAACAGA GCTCCCCTCACTCATGTGTTCCAAAGACAGAAGGTAACAGA < 41bp 0.743353486818624 0.517546086652988 0.37224162 0.06941125 prediction 0.451614800331272 Functional Loss - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67047378 chr8:67047381 synonymous SNV . 0 24 hm5C_associated_SNPs_77826 0 0 0 0 1 TRIM55 chr8:67047390 5'GT 67047390 Upstream 10bp
chr10 13687095 13687095 1 + G A rs116699415 13687092 + 13687072 13687112 41 CAGGTGTGTGTGTGCCCCAGCTCGACTCTCGGTGGTCTCCA CAGGTGTGTGTGTGCCCCAGCTCAACTCTCGGTGGTCTCCA < 41bp 0.767904067811313 0.54209834084576 0.13985279 0.18378243 prediction 0.451611453931107 Functional Loss - FRMD4A ENSG00000151474 UTR3 Human protein_coding chr10:13687092 chr10:13687095 . . 0 24 hm5C_associated_SNPs_77827 0 0 1 0 1 FRMD4A chr10:13687136 5'GT 13687136 Upstream 42bp
chr1 156841493 156841493 1 + T C LIHC 156841492 + 156841472 156841512 41 AACAGGAAGAACGTGACGTGCTGGGCAGAGAACGATGTGGG AACAGGAAGAACGTGACGTGCCGGGCAGAGAACGATGTGGG < 41bp 0.725799159891956 0.483924463044176 0.29535258 0.41944894 prediction 0.451598319783912 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156841492 chr1:156841493 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_77831 0 0 0 0 2 NTRK1 chr1:156841415 3'AG 156841415 Downstream 79bp
chr1 156841493 156841493 1 + T C LIHC 156841492 + 156841472 156841512 41 AACAGGAAGAACGTGACGTGCTGGGCAGAGAACGATGTGGG AACAGGAAGAACGTGACGTGCCGGGCAGAGAACGATGTGGG < 41bp 0.725799159891956 0.483924463044176 0.29535258 0.41944894 prediction 0.451598319783912 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156841492 chr1:156841493 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_77831 0 0 0 0 2 NTRK1 chr1:156841547 5'GT 156841547 Upstream 55bp
chr17 61601589 61601589 1 + C T STAD 61601587 + 61601567 61601607 41 CTGCGAACTCTTCGGCTACTCCCGAGTGGAGGTGATGCAGC CTGCGAACTCTTCGGCTACTCCTGAGTGGAGGTGATGCAGC < 41bp 0.844912464868654 0.619119738207256 0.12747908 0.14194232 prediction 0.451585453322795 Functional Loss - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61601587 chr17:61601589 stopgain 1.000 1 23 hm5C_associated_SNPs_77833 0 0 0 0 2 KCNH6 chr17:61601500 3'AG 61601500 Downstream 90bp
chr17 61601589 61601589 1 + C T STAD 61601587 + 61601567 61601607 41 CTGCGAACTCTTCGGCTACTCCCGAGTGGAGGTGATGCAGC CTGCGAACTCTTCGGCTACTCCTGAGTGGAGGTGATGCAGC < 41bp 0.844912464868654 0.619119738207256 0.12747908 0.14194232 prediction 0.451585453322795 Functional Loss - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61601587 chr17:61601589 stopgain 1.000 1 23 hm5C_associated_SNPs_77833 0 0 0 0 2 KCNH6 chr17:61601597 5'GT 61601597 Upstream 9bp
chr10 99338353 99338353 1 + G A COAD 99338350 + 99338330 99338370 41 GCTGACGGGGGGTCAGCCGACACGTGCGACCAGGTGATGCT GCTGACGGGGGGTCAGCCGACACATGCGACCAGGTGATGCT < 41bp 0.770008146103216 0.544215446241719 0.36347234 0.35633603 prediction 0.451585399722995 Functional Loss - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99338350 chr10:99338353 synonymous SNV . 0 24 hm5C_associated_SNPs_77834 0 0 0 0 2 ANKRD2 chr10:99338255 3'AG 99338255 Downstream 99bp
chr10 99338353 99338353 1 + G A COAD 99338350 + 99338330 99338370 41 GCTGACGGGGGGTCAGCCGACACGTGCGACCAGGTGATGCT GCTGACGGGGGGTCAGCCGACACATGCGACCAGGTGATGCT < 41bp 0.770008146103216 0.544215446241719 0.36347234 0.35633603 prediction 0.451585399722995 Functional Loss - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99338350 chr10:99338353 synonymous SNV . 0 24 hm5C_associated_SNPs_77834 0 0 0 0 2 ANKRD2 chr10:99338362 5'GT 99338362 Upstream 10bp
chr16 85111073 85111073 1 + C T LUSC 85111071 + 85111051 85111091 41 CCGGAGTCCCGGGAGAAGCCCGCGGGCAGCATCGACTCCTA CCGGAGTCCCGGGAGAAGCCCGTGGGCAGCATCGACTCCTA < 41bp 0.83111798334123 0.605325327496589 0.88230747 0.7090635 prediction 0.451585311689282 Functional Loss - KIAA0513 ENSG00000135709 CDS Human protein_coding chr16:85111071 chr16:85111073 nonsynonymous SNV 0.013 0 23 hm5C_associated_SNPs_77835 0 0 1 0 1 KIAA0513 chr16:85111031 3'AG 85111031 Downstream 43bp
chr22 37363558 37363558 1 + G A rs141461017 37363555 + 37363535 37363575 41 GCTTACTGAAACCTCCACCTCCCGGGTTCAAGTGATTCTCC GCTTACTGAAACCTCCACCTCCCAGGTTCAAGTGATTCTCC < 41bp 0.739077613850187 0.513292556907513 0.06602755 0.03902191 prediction 0.451570113885348 Functional Loss - LL22NC01-81G9.3 ENSG00000215403 ncRNA_exonic Human antisense chr22:37363555 chr22:37363558 . . 0 24 hm5C_associated_SNPs_77839 0 0 0 0 1 LL22NC01-81G9.3 chr22:37363629 5'GT 37363629 Upstream 72bp
chr6 55223733 55223733 1 + G A SKCM 55223730 + 55223710 55223750 41 AAAATGCTGGCAGCGTGTGACTAGAAAGTGCCATGAAGATG AAAATGCTGGCAGCGTGTGACTAAAAAGTGCCATGAAGATG < 41bp 0.730303566459442 0.504522746539443 0.062809765 0.11339003 prediction 0.451561639839999 Functional Loss - GFRAL ENSG00000187871 CDS Human protein_coding chr6:55223730 chr6:55223733 nonsynonymous SNV 0.518 0 24 hm5C_associated_SNPs_77843 0 0 0 0 1 GFRAL chr6:55223686 3'AG 55223686 Downstream 48bp
chrX 48542335 48542335 1 + G A BLCA 48542332 + 48542312 48542352 41 TCCACCCTCCTCCAGGACCACGAGAACCAGCGACTCTTTGA TCCACCCTCCTCCAGGACCACGAAAACCAGCGACTCTTTGA < 41bp 0.771634920716592 0.545854850038834 0.6807351 0.19123423 prediction 0.451560141355517 Functional Loss - WAS ENSG00000015285 CDS Human protein_coding chrX:48542332 chrX:48542335 synonymous SNV . 0 24 hm5C_associated_SNPs_77844 0 0 0 0 1 WAS chrX:48542374 5'GT 48542374 Upstream 40bp
chr9 136323094 136323094 1 + A C SKCM 136323093 + 136323073 136323113 41 AGCCCCTCGCTGAGTCCAGCCACGAGTAATGCAGGGGGCTG AGCCCCTCGCTGAGTCCAGCCCCGAGTAATGCAGGGGGCTG < 41bp 0.769012407182978 0.543233574604152 0.37417588 0.23074594 prediction 0.451557665157652 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136323093 chr9:136323094 nonsynonymous SNV 0.006 0 22 hm5C_associated_SNPs_77847 0 0 0 0 1 ADAMTS13 chr9:136323032 3'AG 136323032 Downstream 63bp
chr12 121435467 121435467 1 + C T HNSC 121435465 + 121435445 121435485 41 TGGCTCAGCTGCAGAGCCCCCACGGTGAGCGCCCTGTGCCC TGGCTCAGCTGCAGAGCCCCCATGGTGAGCGCCCTGTGCCC < 41bp 0.806282326744261 0.580504324491346 0.5076823 0.4268349 prediction 0.451556004505831 Functional Loss - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121435465 chr12:121435467 synonymous SNV 0.793 0 23 hm5C_associated_SNPs_77848 0 0 1 0 1 HNF1A chr12:121435468 5'GT 121435468 Upstream 2bp
chr1 11579445 11579445 1 + G T HNSC 11579443 + 11579423 11579463 41 ATTGCAGCCGGAAGACCTCCCTGCACTTCCCCGGAGACGTG ATTGCAGCCGGAAGACCTCCCTTCACTTCCCCGGAGACGTG < 41bp 0.725775671814801 0.367936525172499 0.25833607 0.16714895 prediction 0.451551343629601 Functional Loss - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11579443 chr1:11579445 synonymous SNV . 0 23 hm5C_associated_SNPs_77849 0 0 0 0 1 DISP3 chr1:11579412 3'AG 11579412 Downstream 34bp
chr18 46190853 46190853 1 + A C GBM 46190849 + 46190829 46190869 41 GGGACCTGCAGCCGGAAAAGCTGGACTTCACCCAGTTCCAC GGGACCTGCAGCCGGAAAAGCTGGCCTTCACCCAGTTCCAC < 41bp 0.72577263916824 0.338330062309584 0.39150852 0.2950138 prediction 0.451545278336479 Functional Loss - CTIF ENSG00000134030 CDS Human protein_coding chr18:46190849 chr18:46190853 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_77850 0 0 1 0 1 CTIF chr18:46190818 3'AG 46190818 Downstream 36bp
chr4 106863545 106863545 1 + G A SKCM 106863542 + 106863522 106863562 41 TACCATTTTAAAGGGTGACACAGGAAATAATAATTGGATTC TACCATTTTAAAGGGTGACACAGAAAATAATAATTGGATTC < 41bp 0.756761324473159 0.530995282639082 0.8504599 0.33414996 prediction 0.451532083668154 Functional Loss - NPNT ENSG00000168743 CDS Human protein_coding chr4:106863542 chr4:106863545 nonsynonymous SNV 0.794 3 24 hm5C_associated_SNPs_77853 0 0 1 0 1 NPNT chr4:106863464 3'AG 106863464 Downstream 82bp
chr1 109707302 109707302 1 + G A SKCM 109707299 + 109707279 109707319 41 GACAGTGCTGCTGAGTCCACCGGGAACTGTACTTCGTGAGT GACAGTGCTGCTGAGTCCACCGGAAACTGTACTTCGTGAGT < 41bp 0.784284803431374 0.558521008259365 0.90855515 0.82799524 prediction 0.451527590344017 Functional Loss - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109707299 chr1:109707302 synonymous SNV . 0 24 hm5C_associated_SNPs_77855 0 0 0 0 1 KIAA1324 chr1:109707313 5'GT 109707313 Upstream 12bp
chr10 26513551 26513551 1 + G A rs2839673 26513548 + 26513528 26513568 41 GAGAGAAATCATTGGCTGGCCAGGGGGCTCTGGCGATGGGA GAGAGAAATCATTGGCTGGCCAGAGGGCTCTGGCGATGGGA < 41bp 0.725762548530551 0.481211464272697 0.90568995 0.8717967 prediction 0.451525097061101 Functional Loss - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26513548 chr10:26513551 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_77857 0 0 0 0 2 GAD2 chr10:26513468 3'AG 26513468 Downstream 84bp
chr10 26513551 26513551 1 + G A rs2839673 26513548 + 26513528 26513568 41 GAGAGAAATCATTGGCTGGCCAGGGGGCTCTGGCGATGGGA GAGAGAAATCATTGGCTGGCCAGAGGGCTCTGGCGATGGGA < 41bp 0.725762548530551 0.481211464272697 0.90568995 0.8717967 prediction 0.451525097061101 Functional Loss - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26513548 chr10:26513551 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_77857 0 0 0 0 2 GAD2 chr10:26513580 5'GT 26513580 Upstream 30bp
chr7 43635616 43635616 1 + A C UCEC 43635612 + 43635592 43635632 41 ATTGTCGGATGGAAATAATTCATGAGATTGCTGTACTTGAA ATTGTCGGATGGAAATAATTCATGCGATTGCTGTACTTGAA < 41bp 0.72576180805262 0.319177913422513 0.25692743 0.24112019 prediction 0.451523616105239 Functional Loss - STK17A ENSG00000164543 CDS Human protein_coding chr7:43635612 chr7:43635616 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_77860 0 0 1 0 1 STK17A chr7:43635712 5'GT 43635712 Upstream 97bp
chr22 17976489 17976489 1 + C T BLCA 17976487 + 17976467 17976507 41 TCATCAACTACCGCTGGGAGCTCGAAGAAGGGAAGCCCAAC TCATCAACTACCGCTGGGAGCTTGAAGAAGGGAAGCCCAAC < 41bp 0.725761233460159 0.468214907874962 0.34263882 0.23632082 prediction 0.451522466920318 Functional Loss - CECR2 ENSG00000099954 CDS Human protein_coding chr22:17976487 chr22:17976489 synonymous SNV . 0 23 hm5C_associated_SNPs_77861 0 0 0 0 1 CECR2 chr22:17976435 3'AG 17976435 Downstream 55bp
chr9 124091220 124091220 1 + G A UCEC 124091217 + 124091197 124091237 41 GGCTGCCTACCGCACATCCCCACGGCTGAAGGACAAGAAGA GGCTGCCTACCGCACATCCCCACAGCTGAAGGACAAGAAGA < 41bp 0.725759576981924 0.492664429572073 0.2910417 0.1159077 prediction 0.451519153963847 Functional Loss - GSN ENSG00000148180 CDS Human protein_coding chr9:124091217 chr9:124091220 nonsynonymous SNV 0.926 3 24 hm5C_associated_SNPs_77862 0 0 1 0 2 GSN chr9:124091169 3'AG 124091169 Downstream 52bp
chr9 124091220 124091220 1 + G A UCEC 124091217 + 124091197 124091237 41 GGCTGCCTACCGCACATCCCCACGGCTGAAGGACAAGAAGA GGCTGCCTACCGCACATCCCCACAGCTGAAGGACAAGAAGA < 41bp 0.725759576981924 0.492664429572073 0.2910417 0.1159077 prediction 0.451519153963847 Functional Loss - GSN ENSG00000148180 CDS Human protein_coding chr9:124091217 chr9:124091220 nonsynonymous SNV 0.926 3 24 hm5C_associated_SNPs_77862 0 0 1 0 2 GSN chr9:124091293 5'GT 124091293 Upstream 74bp
chr9 108097935 108097935 1 + G A UCEC 108097932 + 108097912 108097952 41 GTGTAGCAGCGTGTCCAAGGCAAGAACTGAAAACTCTGAGT GTGTAGCAGCGTGTCCAAGGCAAAAACTGAAAACTCTGAGT < 41bp 0.72575902254514 0.494043719037124 0.16832346 0.10313338 prediction 0.45151804509028 Functional Loss - SLC44A1 ENSG00000070214 CDS Human protein_coding chr9:108097932 chr9:108097935 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_77863 0 0 1 0 2 SLC44A1 chr9:108097844 3'AG 108097844 Downstream 92bp
chr9 108097935 108097935 1 + G A UCEC 108097932 + 108097912 108097952 41 GTGTAGCAGCGTGTCCAAGGCAAGAACTGAAAACTCTGAGT GTGTAGCAGCGTGTCCAAGGCAAAAACTGAAAACTCTGAGT < 41bp 0.72575902254514 0.494043719037124 0.16832346 0.10313338 prediction 0.45151804509028 Functional Loss - SLC44A1 ENSG00000070214 CDS Human protein_coding chr9:108097932 chr9:108097935 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_77863 0 0 1 0 2 SLC44A1 chr9:108097980 5'GT 108097980 Upstream 46bp
chr3 41266471 41266471 1 + C T HNSC 41266469 + 41266449 41266489 41 TGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAG TGATGGACAGTATGCAATGACTTGAGCTCAGAGGGTACGAG < 41bp 0.863804742914483 0.638051117607947 0.034319848 0.016628504 prediction 0.451507250613072 Functional Loss - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41266469 chr3:41266471 stopgain 0.994 1 23 hm5C_associated_SNPs_77865 0 0 1 0 1 CTNNB1 chr3:41266445 3'AG 41266445 Downstream 27bp
chr6 7405157 7405157 1 + C T GBM 7405155 + 7405135 7405175 41 TGTCTCTGGCCCATAGGTACCACGGTGGAGGCGTGTATATC TGTCTCTGGCCCATAGGTACCATGGTGGAGGCGTGTATATC < 41bp 0.830395401790082 0.604642451387907 0.18602109 0.2545421 prediction 0.451505900804351 Functional Loss - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7405155 chr6:7405157 synonymous SNV . 0 23 hm5C_associated_SNPs_77866 0 0 1 0 2 RIOK1 chr6:7405151 3'AG 7405151 Downstream 7bp
chr6 7405157 7405157 1 + C T GBM 7405155 + 7405135 7405175 41 TGTCTCTGGCCCATAGGTACCACGGTGGAGGCGTGTATATC TGTCTCTGGCCCATAGGTACCATGGTGGAGGCGTGTATATC < 41bp 0.830395401790082 0.604642451387907 0.18602109 0.2545421 prediction 0.451505900804351 Functional Loss - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7405155 chr6:7405157 synonymous SNV . 0 23 hm5C_associated_SNPs_77866 0 0 1 0 2 RIOK1 chr6:7405254 5'GT 7405254 Upstream 98bp
chr11 118403871 118403871 1 + G T LUAD 118403869 + 118403849 118403889 41 CAGCCTGGCACACAACCTCTCGGTGGTGGCCACCAATGACG CAGCCTGGCACACAACCTCTCGTTGGTGGCCACCAATGACG < 41bp 0.725751432765638 0.372199523481761 0.44734436 0.11828339 prediction 0.451502865531277 Functional Loss - TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118403869 chr11:118403871 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_77868 0 0 0 0 1 TMEM25 chr11:118403922 5'GT 118403922 Upstream 52bp
chr1 220307791 220307791 1 + G C LUSC 220307790 + 220307770 220307810 41 TTGGAAGGAAAAGACCAGCTCGGGGGTTGGTTTCAGTCATC TTGGAAGGAAAAGACCAGCTCCGGGGTTGGTTTCAGTCATC < 41bp 0.877611745584235 0.651860900361818 0.92321396 0.89012945 prediction 0.451501690444835 Functional Loss - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220307790 chr1:220307791 nonsynonymous SNV 0.984 3 22 hm5C_associated_SNPs_77870 0 0 1 0 2 IARS2 chr1:220307744 3'AG 220307744 Downstream 48bp
chr1 220307791 220307791 1 + G C LUSC 220307790 + 220307770 220307810 41 TTGGAAGGAAAAGACCAGCTCGGGGGTTGGTTTCAGTCATC TTGGAAGGAAAAGACCAGCTCCGGGGTTGGTTTCAGTCATC < 41bp 0.877611745584235 0.651860900361818 0.92321396 0.89012945 prediction 0.451501690444835 Functional Loss - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220307790 chr1:220307791 nonsynonymous SNV 0.984 3 22 hm5C_associated_SNPs_77870 0 0 1 0 2 IARS2 chr1:220307852 5'GT 220307852 Upstream 62bp
chr16 69143354 69143354 1 + T C UCEC 69143353 + 69143333 69143373 41 TGGGCACCAGCCTGTTTGCCCTGGCAGTGCTGGGTGGCATC TGGGCACCAGCCTGTTTGCCCCGGCAGTGCTGGGTGGCATC < 41bp 0.738518362443016 0.512771281664499 0.31690633 0.29241285 prediction 0.451494161557035 Functional Loss - HAS3 ENSG00000103044 CDS Human protein_coding chr16:69143353 chr16:69143354 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_77872 0 0 0 0 1 HAS3 chr16:69143299 3'AG 69143299 Downstream 56bp
chr14 77795519 77795519 1 + G T LGG 77795517 + 77795497 77795537 41 AGATGCAGCTGACCTGGGCCCAGAACGCCATCACTTGTGGC AGATGCAGCTGACCTGGGCCCATAACGCCATCACTTGTGGC < 41bp 0.72574646389254 0.365418157842856 0.35121137 0.40726382 prediction 0.451492927785081 Functional Loss - GSTZ1 ENSG00000100577 CDS Human protein_coding chr14:77795517 chr14:77795519 nonsynonymous SNV 0.763 1 23 hm5C_associated_SNPs_77874 0 0 1 0 2 GSTZ1 chr14:77795466 3'AG 77795466 Downstream 54bp
chr14 77795519 77795519 1 + G T LGG 77795517 + 77795497 77795537 41 AGATGCAGCTGACCTGGGCCCAGAACGCCATCACTTGTGGC AGATGCAGCTGACCTGGGCCCATAACGCCATCACTTGTGGC < 41bp 0.72574646389254 0.365418157842856 0.35121137 0.40726382 prediction 0.451492927785081 Functional Loss - GSTZ1 ENSG00000100577 CDS Human protein_coding chr14:77795517 chr14:77795519 nonsynonymous SNV 0.763 1 23 hm5C_associated_SNPs_77874 0 0 1 0 2 GSTZ1 chr14:77795544 5'GT 77795544 Upstream 26bp
chr1 36306800 36306800 1 + G T STAD 36306797 + 36306777 36306817 41 TCCAGCAGCCTGTCATCTTCCTGGGAGCGGATGTCACACAC TCCAGCAGCCTGTCATCTTCCTGTGAGCGGATGTCACACAC < 41bp 0.92470180253668 0.698955549820288 0.7532151 0.07794288 prediction 0.451492505432784 Functional Loss - AGO4 ENSG00000134698 CDS Human protein_coding chr1:36306797 chr1:36306800 stopgain 0.997 1 24 hm5C_associated_SNPs_77875 0 0 1 0 1 AGO4 chr1:36306766 3'AG 36306766 Downstream 35bp
chrX 148035158 148035158 1 + G T LUSC 148035155 + 148035135 148035175 41 CCACCTGCAGTGCAAGCCAGCGGGGGTTCTGGCAGCTCCAG CCACCTGCAGTGCAAGCCAGCGGTGGTTCTGGCAGCTCCAG < 41bp 0.725745428194982 0.359387302822248 0.93736434 0.5808607 prediction 0.451490856389964 Functional Loss - AFF2 ENSG00000155966 CDS Human protein_coding chrX:148035155 chrX:148035158 synonymous SNV . 0 24 hm5C_associated_SNPs_77876 0 0 0 0 1 AFF2 chrX:148035110 3'AG 148035110 Downstream 49bp
chr19 36272096 36272096 1 + G A CESC 36272093 + 36272073 36272113 41 GCTCCGAGTTCATTGAGGCCCACGGGGTGGTGGATGGGATC GCTCCGAGTTCATTGAGGCCCACAGGGTGGTGGATGGGATC < 41bp 0.773305417330543 0.547562863116195 0.8687818 0.52395165 prediction 0.451485108428695 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36272093 chr19:36272096 nonsynonymous SNV 0.963 4 24 hm5C_associated_SNPs_77878 0 0 0 0 2 ARHGAP33 chr19:36272052 3'AG 36272052 Downstream 45bp
chr19 36272096 36272096 1 + G A CESC 36272093 + 36272073 36272113 41 GCTCCGAGTTCATTGAGGCCCACGGGGTGGTGGATGGGATC GCTCCGAGTTCATTGAGGCCCACAGGGTGGTGGATGGGATC < 41bp 0.773305417330543 0.547562863116195 0.8687818 0.52395165 prediction 0.451485108428695 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36272093 chr19:36272096 nonsynonymous SNV 0.963 4 24 hm5C_associated_SNPs_77878 0 0 0 0 2 ARHGAP33 chr19:36272154 5'GT 36272154 Upstream 59bp
chr5 31267710 31267710 1 + A C LUAD 31267709 + 31267689 31267729 41 GCCCTGGAGCTCTCTGGAAACAGCAAAAATGAGCTGAACCG GCCCTGGAGCTCTCTGGAAACCGCAAAAATGAGCTGAACCG < 41bp 0.725742529427031 0.468671853055522 0.20415124 0.102191776 prediction 0.451485058854062 Functional Loss - CDH6 ENSG00000113361 CDS Human protein_coding chr5:31267709 chr5:31267710 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_77879 0 0 0 0 1 CDH6 chr5:31267808 5'GT 31267808 Upstream 99bp
chr3 10183798 10183798 1 + C T BLCA 10183796 + 10183776 10183816 41 GCGTCGTGCTGCCCGTATGGCTCAACTTCGACGGCGAGCCG GCGTCGTGCTGCCCGTATGGCTTAACTTCGACGGCGAGCCG < 41bp 0.805746337136419 0.580010226737856 0.105397075 0.099707276 prediction 0.451472220797127 Functional Loss - VHL ENSG00000134086 CDS Human protein_coding chr3:10183796 chr3:10183798 synonymous SNV . 0 23 hm5C_associated_SNPs_77880 0 0 1 0 1 VHL chr3:10183871 5'GT 10183871 Upstream 74bp
chr19 608089 608089 1 + G A LUSC 608086 + 608066 608106 41 ATCTGGCTGACCATGCTCAGCATGATTGTGGGTGCCACCTG ATCTGGCTGACCATGCTCAGCATAATTGTGGGTGCCACCTG < 41bp 0.725734835840044 0.484835085169913 0.3923172 0.40006846 prediction 0.451469671680087 Functional Loss - HCN2 ENSG00000099822 CDS Human protein_coding chr19:608086 chr19:608089 nonsynonymous SNV 0.992 2 24 hm5C_associated_SNPs_77881 0 0 1 0 1 HCN2 chr19:608182 5'GT 608182 Upstream 94bp
chr12 120106173 120106173 1 + G A BLCA 120106170 + 120106150 120106190 41 CCAAGATCCTGATGGACAGCCCCGAAGACGCCGACCTCTTC CCAAGATCCTGATGGACAGCCCCAAAGACGCCGACCTCTTC < 41bp 0.7257285105134 0.492837847706192 0.17990267 0.11692017 prediction 0.451457021026801 Functional Loss - PRKAB1 ENSG00000111725 CDS Human protein_coding chr12:120106170 chr12:120106173 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_77882 0 0 1 0 1 PRKAB1 chr12:120106208 5'GT 120106208 Upstream 36bp
chr12 121003284 121003284 1 + C T LUAD 121003281 + 121003261 121003301 41 AAAAGAAGGCTCGGGAGGAACGCCGCCGAGAGCGCAGGATT AAAAGAAGGCTCGGGAGGAACGCTGCCGAGAGCGCAGGATT < 41bp 0.732192506660337 0.506483707655394 0.24988729 0.124720454 prediction 0.451417598009884 Functional Loss - RNF10 ENSG00000022840 CDS Human protein_coding chr12:121003281 chr12:121003284 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_77892 0 0 1 0 1 RNF10 chr12:121003231 3'AG 121003231 Downstream 54bp
chr11 117117621 117117621 1 + G A READ 117117618 + 117117598 117117638 41 AGGAGTTTTTGCAGAAGGAGCAGGATCTGAAAGCTGAAATT AGGAGTTTTTGCAGAAGGAGCAGAATCTGAAAGCTGAAATT < 41bp 0.725697383072368 0.489209001774603 0.7157259 0.48654184 prediction 0.451394766144736 Functional Loss - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117117618 chr11:117117621 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_77896 0 0 1 0 2 RNF214 chr11:117117525 3'AG 117117525 Downstream 97bp
chr11 117117621 117117621 1 + G A READ 117117618 + 117117598 117117638 41 AGGAGTTTTTGCAGAAGGAGCAGGATCTGAAAGCTGAAATT AGGAGTTTTTGCAGAAGGAGCAGAATCTGAAAGCTGAAATT < 41bp 0.725697383072368 0.489209001774603 0.7157259 0.48654184 prediction 0.451394766144736 Functional Loss - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117117618 chr11:117117621 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_77896 0 0 1 0 2 RNF214 chr11:117117664 5'GT 117117664 Upstream 44bp
chr7 29603946 29603946 1 + G C rs190568006 29603945 + 29603925 29603965 41 GCGCGCCCCCTTCGTGCTCTCGGCCGCGTTCACCGCGCGAG GCGCGCCCCCTTCGTGCTCTCCGCCGCGTTCACCGCGCGAG < 41bp 0.725697093885465 0.464130735044298 0.896976 0.35780597 prediction 0.45139418777093 Functional Loss - PRR15 ENSG00000176532 UTR5 Human protein_coding chr7:29603945 chr7:29603946 . . 0 22 hm5C_associated_SNPs_77898 0 0 1 0 1 PRR15 chr7:29603993 5'GT 29603993 Upstream 48bp
chr1 160098554 160098554 1 + G A COAD 160098551 + 160098531 160098571 41 CACCATCTGCTCGGACAAGACGGGCACCCTCACCCAGAACC CACCATCTGCTCGGACAAGACGGACACCCTCACCCAGAACC < 41bp 0.725694010550322 0.487795771832434 0.7181232 0.34192795 prediction 0.451388021100644 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160098551 chr1:160098554 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_77900 0 0 0 0 1 ATP1A2 chr1:160098640 5'GT 160098640 Upstream 87bp
chr9 100325032 100325032 1 + C T UCEC 100325030 + 100325010 100325050 41 GCAGCGATCCTGGGCATGCACACGCTCATGAGTAACCAGCA GCAGCGATCCTGGGCATGCACATGCTCATGAGTAACCAGCA < 41bp 0.725693153920804 0.441043860741494 0.057257712 0.120283246 prediction 0.451386307841608 Functional Loss - TMOD1 ENSG00000136842 CDS Human protein_coding chr9:100325030 chr9:100325032 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_77902 0 0 0 0 2 TMOD1 chr9:100325014 3'AG 100325014 Downstream 19bp
chr9 100325032 100325032 1 + C T UCEC 100325030 + 100325010 100325050 41 GCAGCGATCCTGGGCATGCACACGCTCATGAGTAACCAGCA GCAGCGATCCTGGGCATGCACATGCTCATGAGTAACCAGCA < 41bp 0.725693153920804 0.441043860741494 0.057257712 0.120283246 prediction 0.451386307841608 Functional Loss - TMOD1 ENSG00000136842 CDS Human protein_coding chr9:100325030 chr9:100325032 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_77902 0 0 0 0 2 TMOD1 chr9:100325103 5'GT 100325103 Upstream 72bp
chrX 118123421 118123421 1 + G T STAD 118123418 + 118123398 118123438 41 AGTCAGGAGGAAGCAGCAGCCAGGGGAGATGGCAGCAGTCT AGTCAGGAGGAAGCAGCAGCCAGTGGAGATGGCAGCAGTCT < 41bp 0.931648000792262 0.705959684604884 0.8948787 0.46023732 prediction 0.451376632374755 Functional Loss - LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118123418 chrX:118123421 nonsynonymous SNV 0.018 0 24 hm5C_associated_SNPs_77904 0 0 1 0 1 LONRF3 chrX:118123371 3'AG 118123371 Downstream 51bp
chr15 92671719 92671719 1 + G A COAD 92671716 + 92671696 92671736 41 TGCTTTGCTGGCTGCAACAGCACGGTAATGGGATGGGGCAG TGCTTTGCTGGCTGCAACAGCACAGTAATGGGATGGGGCAG < 41bp 0.725686157319171 0.47546643786059 0.69272923 0.35576832 prediction 0.451372314638342 Functional Loss - SLCO3A1 ENSG00000176463 CDS Human protein_coding chr15:92671716 chr15:92671719 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_77905 0 0 0 0 1 SLCO3A1 chr15:92671719 5'GT 92671719 Upstream 1bp
chr11 64031241 64031241 1 + C T rs35169799 64031239 + 64031219 64031259 41 CTGCTCATCTACACCGAAGCCTCGGACTACATTCCTGACGA CTGCTCATCTACACCGAAGCCTTGGACTACATTCCTGACGA < 41bp 0.725685557166165 0.444703194339215 0.07385209 0.07558787 prediction 0.45137111433233 Functional Loss - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64031239 chr11:64031241 nonsynonymous SNV 0.251 3 23 hm5C_associated_SNPs_77906 0 0 0 0 1 PLCB3 chr11:64031163 3'AG 64031163 Downstream 79bp
chr1 17664578 17664578 1 + G A SKCM 17664575 + 17664555 17664595 41 GTGGACAGGGTGCCATCCTGCTGGTGAACTGTGACAGAGAC GTGGACAGGGTGCCATCCTGCTGATGAACTGTGACAGAGAC < 41bp 0.736389787514128 0.51070543669354 0.33199918 0.18554753 prediction 0.451368701641175 Functional Loss - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17664575 chr1:17664578 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_77907 0 0 0 0 2 PADI4 chr1:17664533 3'AG 17664533 Downstream 46bp
chr1 17664578 17664578 1 + G A SKCM 17664575 + 17664555 17664595 41 GTGGACAGGGTGCCATCCTGCTGGTGAACTGTGACAGAGAC GTGGACAGGGTGCCATCCTGCTGATGAACTGTGACAGAGAC < 41bp 0.736389787514128 0.51070543669354 0.33199918 0.18554753 prediction 0.451368701641175 Functional Loss - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17664575 chr1:17664578 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_77907 0 0 0 0 2 PADI4 chr1:17664650 5'GT 17664650 Upstream 73bp
chr5 38370471 38370471 1 + G A COAD 38370468 + 38370448 38370488 41 ACTCCATGGTTATCAAGGGCCTCGATCCAGATACCAACTAC ACTCCATGGTTATCAAGGGCCTCAATCCAGATACCAACTAC < 41bp 0.741352208608442 0.515674470521937 0.23878437 0.10366005 prediction 0.45135547617301 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38370468 chr5:38370471 nonsynonymous SNV 0.685 0 24 hm5C_associated_SNPs_77913 0 0 0 0 2 EGFLAM chr5:38370398 3'AG 38370398 Downstream 74bp
chr5 38370471 38370471 1 + G A COAD 38370468 + 38370448 38370488 41 ACTCCATGGTTATCAAGGGCCTCGATCCAGATACCAACTAC ACTCCATGGTTATCAAGGGCCTCAATCCAGATACCAACTAC < 41bp 0.741352208608442 0.515674470521937 0.23878437 0.10366005 prediction 0.45135547617301 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38370468 chr5:38370471 nonsynonymous SNV 0.685 0 24 hm5C_associated_SNPs_77913 0 0 0 0 2 EGFLAM chr5:38370564 5'GT 38370564 Upstream 94bp
chr2 209353830 209353830 1 + G A LAML 209353827 + 209353807 209353847 41 CCTCACTCCTTCACTGGGCTCGGGTGGGAGATCCGCATGCA CCTCACTCCTTCACTGGGCTCGGATGGGAGATCCGCATGCA < 41bp 0.774777530069497 0.549102927719624 0.8925191 0.54932964 prediction 0.451349204699747 Functional Loss - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209353827 chr2:209353830 synonymous SNV . 0 24 hm5C_associated_SNPs_77914 0 0 0 1 1 PTH2R chr2:209353875 5'GT 209353875 Upstream 46bp
chr1 41204589 41204589 1 + G T UCEC 41204586 + 41204566 41204606 41 AAGCCTACAGTCGTTCTGGCCTCGGGTCATGGAAGAAATCC AAGCCTACAGTCGTTCTGGCCTCTGGTCATGGAAGAAATCC < 41bp 0.725672861264529 0.345418304531757 0.08696276 0.049550414 prediction 0.451345722529058 Functional Loss - NFYC ENSG00000066136 CDS Human protein_coding chr1:41204586 chr1:41204589 nonsynonymous SNV 0.987 3 24 hm5C_associated_SNPs_77915 0 0 1 0 1 NFYC chr1:41204620 5'GT 41204620 Upstream 32bp
chr16 8866730 8866730 1 + G A STAD 8866727 + 8866707 8866747 41 AGTCCGAGGGTGGAGACAACCACGCATCCGATGACTTCTTT AGTCCGAGGGTGGAGACAACCACACATCCGATGACTTCTTT < 41bp 0.761635586371493 0.535962741396608 0.20202586 0.10078341 prediction 0.45134568994977 Functional Loss - ABAT ENSG00000183044 CDS Human protein_coding chr16:8866727 chr16:8866730 nonsynonymous SNV 0.105 4 24 hm5C_associated_SNPs_77916 0 0 1 0 2 ABAT chr16:8866637 3'AG 8866637 Downstream 94bp
chr16 8866730 8866730 1 + G A STAD 8866727 + 8866707 8866747 41 AGTCCGAGGGTGGAGACAACCACGCATCCGATGACTTCTTT AGTCCGAGGGTGGAGACAACCACACATCCGATGACTTCTTT < 41bp 0.761635586371493 0.535962741396608 0.20202586 0.10078341 prediction 0.45134568994977 Functional Loss - ABAT ENSG00000183044 CDS Human protein_coding chr16:8866727 chr16:8866730 nonsynonymous SNV 0.105 4 24 hm5C_associated_SNPs_77916 0 0 1 0 2 ABAT chr16:8866774 5'GT 8866774 Upstream 45bp
chr12 9436457 9436457 1 + G A rs765243998 9436454 + 9436434 9436474 41 CAGACTGGTGAAATCGCAAACTGGGCGTCTGTTCCGGCACC CAGACTGGTGAAATCGCAAACTGAGCGTCTGTTCCGGCACC < 41bp 0.764955925804469 0.539283818413111 0.8992466 0.36994636 prediction 0.451344214782717 Functional Loss - LOC642846 ENSG00000111788 ncRNA_exonic Human unprocessed_pseudogene chr12:9436454 chr12:9436457 . . 0 24 hm5C_associated_SNPs_77917 0 0 0 0 1 LOC642846 chr12:9436492 5'GT 9436492 Upstream 36bp
chr3 50683688 50683688 1 + T C UCEC 50683687 + 50683667 50683707 41 TCCTGAGTGGTCAGAAGTCTCTGAGGATGGTGAGTGAACCT TCCTGAGTGGTCAGAAGTCTCCGAGGATGGTGAGTGAACCT < 41bp 0.776619737499327 0.550952791699824 0.358715 0.82185185 prediction 0.451333891599006 Functional Loss - MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50683687 chr3:50683688 synonymous SNV . 0 22 hm5C_associated_SNPs_77919 0 0 1 0 1 MAPKAPK3 chr3:50683695 5'GT 50683695 Upstream 8bp
chr19 4233248 4233248 1 + C T LAML 4233246 + 4233226 4233266 41 CCCTACGTGCTCAATGTCACCGCCGTCCACCCCTGGGGCTC CCCTACGTGCTCAATGTCACCGTCGTCCACCCCTGGGGCTC < 41bp 0.818018903904771 0.592355002730569 0.2665878 0.32725167 prediction 0.451327802348403 Functional Loss - EBI3 ENSG00000105246 CDS Human protein_coding chr19:4233246 chr19:4233248 nonsynonymous SNV 0.012 1 23 hm5C_associated_SNPs_77921 0 0 0 0 1 EBI3 chr19:4233304 5'GT 4233304 Upstream 57bp
chr13 113536260 113536260 1 + C T COAD 113536258 + 113536238 113536278 41 CACTCTCAGCAGGTGACACTCGCGGCCTGGAAGGAGAAGGT CACTCTCAGCAGGTGACACTCGTGGCCTGGAAGGAGAAGGT < 41bp 0.74643772037969 0.520777959288702 0.8926505 0.9297309 prediction 0.451319522181975 Functional Loss - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113536258 chr13:113536260 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_77923 0 0 1 0 1 ATP11A chr13:113536190 3'AG 113536190 Downstream 71bp
chr4 119161795 119161795 1 + G A rs617430 119161792 + 119161772 119161812 41 TTGCAGAAGAGATGTTTGGTCCCGGGGTGGTATGCCAGCCA TTGCAGAAGAGATGTTTGGTCCCAGGGTGGTATGCCAGCCA < 41bp 0.725659147083075 0.48380916867004 0.7987875 0.18474141 prediction 0.451318294166149 Functional Loss - NDST3 ENSG00000164100 CDS Human protein_coding chr4:119161792 chr4:119161795 synonymous SNV . 0 24 hm5C_associated_SNPs_77924 0 0 0 0 1 NDST3 chr4:119161849 5'GT 119161849 Upstream 55bp
chr6 30529704 30529704 1 + G C SKCM 30529700 + 30529680 30529720 41 CTTGGGGTAGAGGCCCAATTCGGAGAGGGCTTGGCCCCAGG CTTGGGGTAGAGGCCCAATTCGGACAGGGCTTGGCCCCAGG < 41bp 0.820204660049276 0.594551943556568 0.9030012 0.32803392 prediction 0.451305432985415 Functional Loss - PRR3 ENSG00000204576 CDS Human protein_coding chr6:30529700 chr6:30529704 nonsynonymous SNV 0.991 0 25 hm5C_associated_SNPs_77930 0 0 1 0 1 PRR3 chr6:30529611 3'AG 30529611 Downstream 94bp
chr14 100992261 100992261 1 + C T SKCM 100992258 + 100992238 100992278 41 AGACCTTGGACATCCTGTTCCTCCGGGAAGGCTCCGAGTTC AGACCTTGGACATCCTGTTCCTCTGGGAAGGCTCCGAGTTC < 41bp 0.750072590788799 0.524420979400772 0.08903828 0.062226743 prediction 0.451303222776053 Functional Loss - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100992258 chr14:100992261 nonsynonymous SNV 0.885 2 24 hm5C_associated_SNPs_77933 0 0 0 0 1 WDR25 chr14:100992207 3'AG 100992207 Downstream 55bp
chr11 65048558 65048558 1 + G A KICH 65048555 + 65048535 65048575 41 GAGGGAGACCGGGAACATTCCTCGGGTGCTCAAATTCCAGT GAGGGAGACCGGGAACATTCCTCAGGTGCTCAAATTCCAGT < 41bp 0.769811146391804 0.544161423691621 0.4041891 0.07087445 prediction 0.451299445400367 Functional Loss - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65048555 chr11:65048558 synonymous SNV . 0 24 hm5C_associated_SNPs_77934 0 0 1 0 2 POLA2 chr11:65048463 3'AG 65048463 Downstream 96bp
chr11 65048558 65048558 1 + G A KICH 65048555 + 65048535 65048575 41 GAGGGAGACCGGGAACATTCCTCGGGTGCTCAAATTCCAGT GAGGGAGACCGGGAACATTCCTCAGGTGCTCAAATTCCAGT < 41bp 0.769811146391804 0.544161423691621 0.4041891 0.07087445 prediction 0.451299445400367 Functional Loss - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65048555 chr11:65048558 synonymous SNV . 0 24 hm5C_associated_SNPs_77934 0 0 1 0 2 POLA2 chr11:65048618 5'GT 65048618 Upstream 61bp
chr4 84516068 84516068 1 + G T LUAD 84516066 + 84516046 84516086 41 GTCAAGGCTTGTCCTCATGTCTGGTTTGAACGCTCAGAAAT GTCAAGGCTTGTCCTCATGTCTTGTTTGAACGCTCAGAAAT < 41bp 0.725649710901902 0.385806765602321 0.19287625 0.078572005 prediction 0.451299421803804 Functional Loss - GPAT3 ENSG00000138678 CDS Human protein_coding chr4:84516066 chr4:84516068 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_77935 0 0 1 0 2 GPAT3 chr4:84515998 3'AG 84515998 Downstream 71bp
chr4 84516068 84516068 1 + G T LUAD 84516066 + 84516046 84516086 41 GTCAAGGCTTGTCCTCATGTCTGGTTTGAACGCTCAGAAAT GTCAAGGCTTGTCCTCATGTCTTGTTTGAACGCTCAGAAAT < 41bp 0.725649710901902 0.385806765602321 0.19287625 0.078572005 prediction 0.451299421803804 Functional Loss - GPAT3 ENSG00000138678 CDS Human protein_coding chr4:84516066 chr4:84516068 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_77935 0 0 1 0 2 GPAT3 chr4:84516113 5'GT 84516113 Upstream 46bp
chr11 128651901 128651901 1 + G A GBM 128651898 + 128651878 128651918 41 CTCCCACACCGACCAATCCTCACGATTGAGTGTCAAAGAAG CTCCCACACCGACCAATCCTCACAATTGAGTGTCAAAGAAG < 41bp 0.7725718828936 0.546926843299729 0.018019557 0.008946896 prediction 0.451290079187742 Functional Loss - FLI1 ENSG00000151702 CDS Human protein_coding chr11:128651898 chr11:128651901 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_77938 0 0 0 0 2 FLI1 chr11:128651853 3'AG 128651853 Downstream 49bp
chr11 128651901 128651901 1 + G A GBM 128651898 + 128651878 128651918 41 CTCCCACACCGACCAATCCTCACGATTGAGTGTCAAAGAAG CTCCCACACCGACCAATCCTCACAATTGAGTGTCAAAGAAG < 41bp 0.7725718828936 0.546926843299729 0.018019557 0.008946896 prediction 0.451290079187742 Functional Loss - FLI1 ENSG00000151702 CDS Human protein_coding chr11:128651898 chr11:128651901 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_77938 0 0 0 0 2 FLI1 chr11:128651918 5'GT 128651918 Upstream 18bp
chr9 136218179 136218179 1 + C T STAD 136218177 + 136218157 136218197 41 CTGTGGCTCGTATCGCCAAGCTCGAAAAGGCAAAGGCTAAA CTGTGGCTCGTATCGCCAAGCTTGAAAAGGCAAAGGCTAAA < 41bp 0.854447559300348 0.628803104110302 0.04048887 0.039912462 prediction 0.451288910380091 Functional Loss - RPL7A ENSG00000148303 CDS Human protein_coding chr9:136218177 chr9:136218179 synonymous SNV . 0 23 hm5C_associated_SNPs_77940 0 0 1 0 1 RPL7A chr9:136218117 3'AG 136218117 Downstream 63bp
chr13 113536149 113536149 1 + G A LUAD 113536146 + 113536126 113536166 41 GCAGAATGGGTGCGCACAGCCTCGGGACCGCGACTCAGAAT GCAGAATGGGTGCGCACAGCCTCAGGACCGCGACTCAGAAT < 41bp 0.725641963301675 0.48440654394244 0.057120085 0.04350531 prediction 0.451283926603351 Functional Loss - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113536146 chr13:113536149 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_77942 0 0 1 0 1 ATP11A chr13:113536130 3'AG 113536130 Downstream 20bp
chr8 133906033 133906033 1 + G A STAD 133906030 + 133906010 133906050 41 CCAACAGTTCTCGGTTCCCTCTGGGGGAGAGTTTCCTGGTG CCAACAGTTCTCGGTTCCCTCTGAGGGAGAGTTTCCTGGTG < 41bp 0.725638107826308 0.484452250868017 0.91415346 0.71603745 prediction 0.451276215652615 Functional Loss - TG ENSG00000042832 CDS Human protein_coding chr8:133906030 chr8:133906033 nonsynonymous SNV 0.955 2 24 hm5C_associated_SNPs_77944 0 0 0 0 1 TG chr8:133905935 3'AG 133905935 Downstream 99bp
chr3 42569614 42569614 1 + C T UCEC 42569612 + 42569592 42569632 41 TCGGACCAGTGCTCCGAGGGCTCGGTGAGGATCCTGGCCCT TCGGACCAGTGCTCCGAGGGCTTGGTGAGGATCCTGGCCCT < 41bp 0.804204432760315 0.578567101513499 0.85294044 0.866575 prediction 0.451274662493633 Functional Loss - VIPR1 ENSG00000114812 CDS Human protein_coding chr3:42569612 chr3:42569614 nonsynonymous SNV 0.448 0 23 hm5C_associated_SNPs_77947 0 0 0 0 1 VIPR1 chr3:42569615 5'GT 42569615 Upstream 2bp
chr1 109777924 109777924 1 + C T SKCM 109777922 + 109777902 109777942 41 AGCAGCCCATTGCTGCCCTGCACCGGGATGAGTGGCTCCGG AGCAGCCCATTGCTGCCCTGCATCGGGATGAGTGGCTCCGG < 41bp 0.725634754312178 0.471945279847387 0.17526188 0.20003814 prediction 0.451269508624357 Functional Loss - SARS ENSG00000031698 CDS Human protein_coding chr1:109777922 chr1:109777924 synonymous SNV . 0 23 hm5C_associated_SNPs_77949 0 0 1 0 1 SARS chr1:109777832 3'AG 109777832 Downstream 93bp
chr4 81952673 81952673 1 + C T GBM 81952671 + 81952651 81952691 41 GGCGGCCCGGACACCGGGCTCCCTGGAGGGAGGCTCGCAGC GGCGGCCCGGACACCGGGCTCCTTGGAGGGAGGCTCGCAGC < 41bp 0.741247138386001 0.515612601879291 0.48150715 0.54393536 prediction 0.451269073013419 Functional Loss - BMP3 ENSG00000152785 CDS Human protein_coding chr4:81952671 chr4:81952673 synonymous SNV . 0 23 hm5C_associated_SNPs_77950 0 0 0 0 1 BMP3 chr4:81952754 5'GT 81952754 Upstream 82bp
chr17 32598209 32598209 1 + A C LUAD 32598205 + 32598185 32598225 41 ACCTGCTGCTACAGATTTATCAATAAGAAAATCCCTAAGCA ACCTGCTGCTACAGATTTATCAATCAGAAAATCCCTAAGCA < 41bp 0.725631963299291 0.32297107451375 0.083794326 0.073121995 prediction 0.451263926598583 Functional Loss - CCL7 ENSG00000108688 CDS Human protein_coding chr17:32598205 chr17:32598209 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_77952 0 0 0 0 2 CCL7 chr17:32598165 3'AG 32598165 Downstream 45bp
chr17 32598209 32598209 1 + A C LUAD 32598205 + 32598185 32598225 41 ACCTGCTGCTACAGATTTATCAATAAGAAAATCCCTAAGCA ACCTGCTGCTACAGATTTATCAATCAGAAAATCCCTAAGCA < 41bp 0.725631963299291 0.32297107451375 0.083794326 0.073121995 prediction 0.451263926598583 Functional Loss - CCL7 ENSG00000108688 CDS Human protein_coding chr17:32598205 chr17:32598209 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_77952 0 0 0 0 2 CCL7 chr17:32598282 5'GT 32598282 Upstream 74bp
chr5 38350697 38350697 1 + G C LIHC 38350696 + 38350676 38350716 41 AAGGGCGGCTGAGCTCTCCTCGGCATGTCACCACTTTGTCC AAGGGCGGCTGAGCTCTCCTCCGCATGTCACCACTTTGTCC < 41bp 0.725630549613023 0.404305934965742 0.7847499 0.27982247 prediction 0.451261099226047 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38350696 chr5:38350697 nonsynonymous SNV 0.940 2 22 hm5C_associated_SNPs_77953 0 0 0 0 2 EGFLAM chr5:38350603 3'AG 38350603 Downstream 95bp
chr5 38350697 38350697 1 + G C LIHC 38350696 + 38350676 38350716 41 AAGGGCGGCTGAGCTCTCCTCGGCATGTCACCACTTTGTCC AAGGGCGGCTGAGCTCTCCTCCGCATGTCACCACTTTGTCC < 41bp 0.725630549613023 0.404305934965742 0.7847499 0.27982247 prediction 0.451261099226047 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38350696 chr5:38350697 nonsynonymous SNV 0.940 2 22 hm5C_associated_SNPs_77953 0 0 0 0 2 EGFLAM chr5:38350720 5'GT 38350720 Upstream 24bp
chr2 179201129 179201129 1 + G T UCEC 179201127 + 179201107 179201147 41 GTAAAGTGGCAGCCTGGTTACAGGACTCGGAAGAGATGGAC GTAAAGTGGCAGCCTGGTTACATGACTCGGAAGAGATGGAC < 41bp 0.897437080186482 0.671809149382333 0.43692005 0.1417104 prediction 0.451255861608299 Functional Loss - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179201127 chr2:179201129 nonsynonymous SNV 0.975 2 23 hm5C_associated_SNPs_77955 0 0 0 0 1 OSBPL6 chr2:179201160 5'GT 179201160 Upstream 32bp
chr17 73096184 73096184 1 + G T LUAD 73096181 + 73096161 73096201 41 CGCCGGCGGGTGCTGGCCAACGCGCTGGCCTCGATGGGCGT CGCCGGCGGGTGCTGGCCAACGCTCTGGCCTCGATGGGCGT < 41bp 0.725626950227685 0.32696688772917 0.28071976 0.06450227 prediction 0.45125390045537 Functional Loss - SLC16A5 ENSG00000170190 CDS Human protein_coding chr17:73096181 chr17:73096184 synonymous SNV . 0 24 hm5C_associated_SNPs_77956 0 0 1 0 1 SLC16A5 chr17:73096102 3'AG 73096102 Downstream 83bp
chr10 101716865 101716865 1 - G A rs146379907 101716867 - 101716847 101716887 41 TCTTCCCATCTTCATGTGTCCGCGAGCTCTGCCTCTCCTCA TCTTCCCATCTTCATGTGTCCGTGAGCTCTGCCTCTCCTCA < 41bp 0.829923253119997 0.604309913756551 0.09921014 0.06801474 prediction 0.451226678726891 Functional Loss - DNMBP ENSG00000107554 CDS Human protein_coding chr10:101716867 chr10:101716865 synonymous SNV . 0 23 hm5C_associated_SNPs_77958 0 0 0 0 1 DNMBP chr10:101716962 3'AG 101716962 Downstream 98bp
chr11 66272178 66272178 1 + C T BLCA 66272176 + 66272156 66272196 41 CCCCCGAGTGCTTCCTCACCCTCAGGGACACGGTGCTGCTG CCCCCGAGTGCTTCCTCACCCTTAGGGACACGGTGCTGCTG < 41bp 0.725609969013064 0.446595123619907 0.016722202 0.02637893 prediction 0.451219938026127 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66272176 chr11:66272178 synonymous SNV . 0 23 hm5C_associated_SNPs_77960 0 0 1 0 2 DPP3 chr11:66272083 3'AG 66272083 Downstream 96bp
chr11 66272178 66272178 1 + C T BLCA 66272176 + 66272156 66272196 41 CCCCCGAGTGCTTCCTCACCCTCAGGGACACGGTGCTGCTG CCCCCGAGTGCTTCCTCACCCTTAGGGACACGGTGCTGCTG < 41bp 0.725609969013064 0.446595123619907 0.016722202 0.02637893 prediction 0.451219938026127 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66272176 chr11:66272178 synonymous SNV . 0 23 hm5C_associated_SNPs_77960 0 0 1 0 2 DPP3 chr11:66272245 5'GT 66272245 Upstream 68bp
chr17 78403629 78403629 1 + C T LUSC 78403627 + 78403607 78403647 41 AAAGGAGACTCCGGAGAGTCCTCAGGTGAGGGCCAGCCCCC AAAGGAGACTCCGGAGAGTCCTTAGGTGAGGGCCAGCCCCC < 41bp 0.79170446529162 0.566096902261688 0.15755588 0.091371804 prediction 0.451215126059865 Functional Loss - ENDOV ENSG00000173818 CDS Human protein_coding chr17:78403627 chr17:78403629 stopgain 0.001 1 23 hm5C_associated_SNPs_77962 0 0 0 0 2 ENDOV chr17:78403573 3'AG 78403573 Downstream 57bp
chr17 78403629 78403629 1 + C T LUSC 78403627 + 78403607 78403647 41 AAAGGAGACTCCGGAGAGTCCTCAGGTGAGGGCCAGCCCCC AAAGGAGACTCCGGAGAGTCCTTAGGTGAGGGCCAGCCCCC < 41bp 0.79170446529162 0.566096902261688 0.15755588 0.091371804 prediction 0.451215126059865 Functional Loss - ENDOV ENSG00000173818 CDS Human protein_coding chr17:78403627 chr17:78403629 stopgain 0.001 1 23 hm5C_associated_SNPs_77962 0 0 0 0 2 ENDOV chr17:78403631 5'GT 78403631 Upstream 3bp
chr12 121855361 121855361 1 + G T COAD 121855358 + 121855338 121855378 41 GCTCCGTTTGTTCAGTCTTACAAGAAAATCTCCGTAGATGT GCTCCGTTTGTTCAGTCTTACAATAAAATCTCCGTAGATGT < 41bp 0.725606052871231 0.341037796386776 0.33168378 0.19758648 prediction 0.451212105742463 Functional Loss - RNF34 ENSG00000170633 CDS Human protein_coding chr12:121855358 chr12:121855361 stopgain 1.000 1 24 hm5C_associated_SNPs_77963 0 0 1 0 1 RNF34 chr12:121855307 3'AG 121855307 Downstream 55bp
chr2 121684996 121684996 1 + G A LUSC 121684993 + 121684973 121685013 41 TACCGATTGACATGCGACACCAGGAAGGAAGGTACCATTAC TACCGATTGACATGCGACACCAGAAAGGAAGGTACCATTAC < 41bp 0.730573201498763 0.504970076637951 0.1737018 0.13081008 prediction 0.451206249721624 Functional Loss - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121684993 chr2:121684996 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_77965 0 0 0 0 1 GLI2 chr2:121684937 3'AG 121684937 Downstream 60bp
chr8 133816130 133816130 1 + C T CHOL 133816128 + 133816108 133816148 41 GAACAAAACAGGGAGTAAACCTCGAACCAGCGCTAACAGCA GAACAAAACAGGGAGTAAACCTTGAACCAGCGCTAACAGCA < 41bp 0.869278057630284 0.643677951109308 0.90057874 0.50203294 prediction 0.451200213041951 Functional Loss - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133816128 chr8:133816130 stopgain 0.996 1 23 hm5C_associated_SNPs_77968 0 0 1 1 1 PHF20L1 chr8:133816064 3'AG 133816064 Downstream 67bp
chr22 29704683 29704683 1 + C T THYM 29704681 + 29704661 29704701 41 CCGCACCAGGGACTCCTGCCCGCGGCCCCCGCATGACACCC CCGCACCAGGGACTCCTGCCCGTGGCCCCCGCATGACACCC < 41bp 0.750763446236919 0.525163923511334 0.44539493 0.37316126 prediction 0.451199045451169 Functional Loss - GAS2L1 ENSG00000185340 CDS Human protein_coding chr22:29704681 chr22:29704683 synonymous SNV . 0 23 hm5C_associated_SNPs_77970 0 0 0 0 1 GAS2L1 chr22:29704728 5'GT 29704728 Upstream 46bp
chr1 248039228 248039228 1 + G T ACC 248039226 + 248039206 248039246 41 TGTAAAGCTGGATCCCGCCACGGCGCACCCGAGTCTGCTCT TGTAAAGCTGGATCCCGCCACGTCGCACCCGAGTCTGCTCT < 41bp 0.725593764698814 0.365672888947656 0.15909478 0.02529496 prediction 0.451187529397628 Functional Loss - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039226 chr1:248039228 nonsynonymous SNV 0.019 3 23 hm5C_associated_SNPs_77972 0 0 0 0 1 TRIM58 chr1:248039202 3'AG 248039202 Downstream 27bp
chr10 95931002 95931002 1 + A T LUAD 95930998 + 95930978 95931018 41 CCTTCAAGTTCAGCTGGGATCAGCAAGGAGCTGATCGATCT CCTTCAAGTTCAGCTGGGATCAGCTAGGAGCTGATCGATCT < 41bp 0.725585910842998 0.403073060895737 0.48072448 0.181714 prediction 0.451171821685996 Functional Loss - PLCE1 ENSG00000138193 CDS Human protein_coding chr10:95930998 chr10:95931002 stopgain 0.995 1 25 hm5C_associated_SNPs_77976 0 0 1 0 1 PLCE1 chr10:95930937 3'AG 95930937 Downstream 66bp
chr19 11350955 11350955 1 + G T UCEC 11350952 + 11350932 11350972 41 CCTGGCTGGGCCCTGCCTACCGAGAATTTGAGGTCTTAAAG CCTGGCTGGGCCCTGCCTACCGATAATTTGAGGTCTTAAAG < 41bp 0.927524130643128 0.701951791095406 0.8827387 0.4675151 prediction 0.451144679095443 Functional Loss - ANGPTL8 ENSG00000130173 CDS Human protein_coding chr19:11350952 chr19:11350955 stopgain 0.402 0 24 hm5C_associated_SNPs_77982 0 0 1 0 1 ANGPTL8 chr19:11350972 5'GT 11350972 Upstream 18bp
chr19 1227664 1227664 1 + G A rs181155548 1227661 + 1227641 1227681 41 CTGCCGGTTCCGCCCGCCCTCCCGGAGAGGTGGCCGCCATG CTGCCGGTTCCGCCCGCCCTCCCAGAGAGGTGGCCGCCATG < 41bp 0.787052742054236 0.561480688558495 0.34351057 0.26127234 prediction 0.451144106991482 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1227661 chr19:1227664 unknown . 0 24 hm5C_associated_SNPs_77983 0 0 0 0 1 STK11 chr19:1227592 3'AG 1227592 Downstream 73bp
chr12 119773056 119773056 1 + G A STAD 119773053 + 119773033 119773073 41 GCTGTCCGGCCCTTTTATGCCTCGGAGAACCTAAGGCAGGT GCTGTCCGGCCCTTTTATGCCTCAGAGAACCTAAGGCAGGT < 41bp 0.759492648525155 0.533922245807332 0.4241288 0.29499567 prediction 0.451140805435647 Functional Loss - CCDC60 ENSG00000183273 CDS Human protein_coding chr12:119773053 chr12:119773056 synonymous SNV . 0 24 hm5C_associated_SNPs_77984 0 0 0 0 1 CCDC60 chr12:119773071 5'GT 119773071 Upstream 16bp
chr5 149901304 149901304 1 + G T SARC 149901302 + 149901282 149901322 41 GACAAGTACTGTGTGGCCTACGGCGTGGGCATCATTGGCTT GACAAGTACTGTGTGGCCTACGTCGTGGGCATCATTGGCTT < 41bp 0.725567651464953 0.373794493708252 0.5217494 0.2642324 prediction 0.451135302929905 Functional Loss - NDST1 ENSG00000070614 CDS Human protein_coding chr5:149901302 chr5:149901304 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_77986 0 0 1 0 1 NDST1 chr5:149901329 5'GT 149901329 Upstream 26bp
chr2 234072372 234072372 1 + G A HNSC 234072369 + 234072349 234072389 41 GAAGGTAACGCCCCCCCTCCCAAGAAGATCACGTCCTGGTT GAAGGTAACGCCCCCCCTCCCAAAAAGATCACGTCCTGGTT < 41bp 0.725566636595636 0.480487753080839 0.49144086 0.115621865 prediction 0.451133273191273 Functional Loss - INPP5D ENSG00000168918 CDS Human protein_coding chr2:234072369 chr2:234072372 synonymous SNV . 0 24 hm5C_associated_SNPs_77989 0 0 0 0 1 INPP5D chr2:234072353 3'AG 234072353 Downstream 20bp
chrX 86067922 86067922 1 + G T LUSC 86067919 + 86067899 86067939 41 GGACAAGATACAGCTGACTCCTGGGCAGGCATTGCCCGCTG GGACAAGATACAGCTGACTCCTGTGCAGGCATTGCCCGCTG < 41bp 0.725563363292015 0.378874654878707 0.29982466 0.06642109 prediction 0.45112672658403 Functional Loss - DACH2 ENSG00000126733 CDS Human protein_coding chrX:86067919 chrX:86067922 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_77991 0 0 0 0 2 DACH2 chrX:86067859 3'AG 86067859 Downstream 64bp
chrX 86067922 86067922 1 + G T LUSC 86067919 + 86067899 86067939 41 GGACAAGATACAGCTGACTCCTGGGCAGGCATTGCCCGCTG GGACAAGATACAGCTGACTCCTGTGCAGGCATTGCCCGCTG < 41bp 0.725563363292015 0.378874654878707 0.29982466 0.06642109 prediction 0.45112672658403 Functional Loss - DACH2 ENSG00000126733 CDS Human protein_coding chrX:86067919 chrX:86067922 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_77991 0 0 0 0 2 DACH2 chrX:86068007 5'GT 86068007 Upstream 86bp
chr17 9729515 9729515 1 + C T CESC 9729513 + 9729493 9729533 41 CCTTCCACAGGAAGTGCTCTCTCTGGGCCCCTGGGAGGCCC CCTTCCACAGGAAGTGCTCTCTTTGGGCCCCTGGGAGGCCC < 41bp 0.784551793016066 0.558990260352782 0.33460099 0.17580765 prediction 0.451123065326567 Functional Loss - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9729513 chr17:9729515 synonymous SNV . 0 23 hm5C_associated_SNPs_77992 0 0 0 0 1 GLP2R chr17:9729569 5'GT 9729569 Upstream 55bp
chr9 139693615 139693615 1 + G A rs140082981 139693612 + 139693592 139693632 41 AATATGGACCAGAACAAGGCCACGCTGGCCCTCCTGCGCAG AATATGGACCAGAACAAGGCCACACTGGCCCTCCTGCGCAG < 41bp 0.725559962091679 0.468985677251073 0.06010598 0.04235071 prediction 0.451119924183357 Functional Loss - CCDC183 ENSG00000213213;ENSG00000272896 CDS Human other chr9:139693612 chr9:139693615 synonymous SNV . 0 24 hm5C_associated_SNPs_77994 0 0 0 0 2 CCDC183 chr9:139693554 3'AG 139693554 Downstream 62bp
chr9 139693615 139693615 1 + G A rs140082981 139693612 + 139693592 139693632 41 AATATGGACCAGAACAAGGCCACGCTGGCCCTCCTGCGCAG AATATGGACCAGAACAAGGCCACACTGGCCCTCCTGCGCAG < 41bp 0.725559962091679 0.468985677251073 0.06010598 0.04235071 prediction 0.451119924183357 Functional Loss - CCDC183 ENSG00000213213;ENSG00000272896 CDS Human other chr9:139693612 chr9:139693615 synonymous SNV . 0 24 hm5C_associated_SNPs_77994 0 0 0 0 2 CCDC183 chr9:139693675 5'GT 139693675 Upstream 61bp
chr12 118577338 118577338 1 + G T LUAD 118577336 + 118577316 118577356 41 CCTCTCCGATTATGTGGGCTCGGGGCCTCCCAAGGGCACAG CCTCTCCGATTATGTGGGCTCGTGGCCTCCCAAGGGCACAG < 41bp 0.911996042932852 0.686437248392799 0.8840403 0.20455194 prediction 0.451117589080106 Functional Loss - PEBP1 ENSG00000089220 CDS Human protein_coding chr12:118577336 chr12:118577338 nonsynonymous SNV 0.976 4 23 hm5C_associated_SNPs_77996 0 0 1 0 2 PEBP1 chr12:118577256 3'AG 118577256 Downstream 83bp
chr12 118577338 118577338 1 + G T LUAD 118577336 + 118577316 118577356 41 CCTCTCCGATTATGTGGGCTCGGGGCCTCCCAAGGGCACAG CCTCTCCGATTATGTGGGCTCGTGGCCTCCCAAGGGCACAG < 41bp 0.911996042932852 0.686437248392799 0.8840403 0.20455194 prediction 0.451117589080106 Functional Loss - PEBP1 ENSG00000089220 CDS Human protein_coding chr12:118577336 chr12:118577338 nonsynonymous SNV 0.976 4 23 hm5C_associated_SNPs_77996 0 0 1 0 2 PEBP1 chr12:118577356 5'GT 118577356 Upstream 19bp
chr10 134015485 134015485 1 + G A rs3736257 134015482 + 134015462 134015502 41 ATGGACGAGAATGAGTTCGTCGCGGTGACCAGTACAAATGC ATGGACGAGAATGAGTTCGTCGCAGTGACCAGTACAAATGC < 41bp 0.784169540738537 0.558613817869571 0.5204026 0.39442277 prediction 0.451111445737932 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134015482 chr10:134015485 synonymous SNV . 0 24 hm5C_associated_SNPs_77998 0 0 1 0 1 DPYSL4 chr10:134015450 3'AG 134015450 Downstream 36bp
chr18 76754898 76754898 1 + G A SKCM 76754895 + 76754875 76754915 41 TTCAGCCTGCTGTTCCTGAGCAGGGAGCGGGGTAAGTGTCC TTCAGCCTGCTGTTCCTGAGCAGAGAGCGGGGTAAGTGTCC < 41bp 0.786706992672263 0.56115352253055 0.89588475 0.55549675 prediction 0.451106940283426 Functional Loss - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76754895 chr18:76754898 synonymous SNV . 0 24 hm5C_associated_SNPs_77999 0 0 0 0 1 SALL3 chr18:76754905 5'GT 76754905 Upstream 8bp
chr19 24270126 24270126 1 + G A BRCA 24270123 + 24270103 24270143 41 AGCTAAGATGCCAGGACCCCCTAGAAGCCTAGAAATGGTGA AGCTAAGATGCCAGGACCCCCTAAAAGCCTAGAAATGGTGA < 41bp 0.735738048466012 0.510184747021615 0.27325535 0.087411225 prediction 0.451106602888794 Functional Loss - ZNF254 ENSG00000213096 CDS Human protein_coding chr19:24270123 chr19:24270126 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_78000 0 0 1 0 1 ZNF254 chr19:24270139 5'GT 24270139 Upstream 14bp
chr12 53676087 53676087 1 + G A COAD 53676084 + 53676064 53676104 41 CTCTGCTGCTGTCTGTGCTTCGGGATCCTGCCCTCCAGAAG CTCTGCTGCTGTCTGTGCTTCGGAATCCTGCCCTCCAGAAG < 41bp 0.816256868613368 0.590705501883616 0.9130132 0.5885916 prediction 0.451102733459505 Functional Loss - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53676084 chr12:53676087 nonsynonymous SNV 0.942 0 24 hm5C_associated_SNPs_78002 0 0 1 0 1 ESPL1 chr12:53676048 3'AG 53676048 Downstream 40bp
chr9 132636968 132636968 1 + G A LIHC 132636965 + 132636945 132636985 41 GACCTGCGCCCCTTCCTTGCCAAGGAGTGCACATCCCAGAT GACCTGCGCCCCTTCCTTGCCAAAGAGTGCACATCCCAGAT < 41bp 0.725550905740794 0.477362545709846 0.88955176 0.8147005 prediction 0.451101811481588 Functional Loss - USP20 ENSG00000136878 CDS Human protein_coding chr9:132636965 chr9:132636968 synonymous SNV . 0 24 hm5C_associated_SNPs_78003 0 0 0 0 1 USP20 chr9:132637035 5'GT 132637035 Upstream 68bp
chr22 32518023 32518023 1 + A C rs150248068 32518022 + 32518002 32518042 41 AGGAGGAGGCACTTGCCACGCACGCTGGAGACTCGAGCCTG AGGAGGAGGCACTTGCCACGCCCGCTGGAGACTCGAGCCTG < 41bp 0.732624407640208 0.507074687438037 0.14048299 0.18521929 prediction 0.45109944040434 Functional Loss - AP1B1P1 ENSG00000234479 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:32518022 chr22:32518023 . . 0 22 hm5C_associated_SNPs_78004 0 0 0 0 1 AP1B1P1 chr22:32518104 5'GT 32518104 Upstream 82bp
chr6 39867926 39867926 1 + C T CESC 39867924 + 39867904 39867944 41 CCTGTCATGAGCGACTTCATCACGGTGTCCAGCTTCAGCTT CCTGTCATGAGCGACTTCATCATGGTGTCCAGCTTCAGCTT < 41bp 0.845873064038263 0.620326588082472 0.90649486 0.8365841 prediction 0.451092951911582 Functional Loss - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39867924 chr6:39867926 nonsynonymous SNV 0.750 4 23 hm5C_associated_SNPs_78005 0 0 0 0 3 DAAM2 chr6:39867853 3'AG 39867853 Downstream 74bp
chr6 39867926 39867926 1 + C T CESC 39867924 + 39867904 39867944 41 CCTGTCATGAGCGACTTCATCACGGTGTCCAGCTTCAGCTT CCTGTCATGAGCGACTTCATCATGGTGTCCAGCTTCAGCTT < 41bp 0.845873064038263 0.620326588082472 0.90649486 0.8365841 prediction 0.451092951911582 Functional Loss - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39867924 chr6:39867926 nonsynonymous SNV 0.750 4 23 hm5C_associated_SNPs_78005 0 0 0 0 3 DAAM2 chr6:39867856 3'AG 39867856 Downstream 71bp
chr6 39867926 39867926 1 + C T CESC 39867924 + 39867904 39867944 41 CCTGTCATGAGCGACTTCATCACGGTGTCCAGCTTCAGCTT CCTGTCATGAGCGACTTCATCATGGTGTCCAGCTTCAGCTT < 41bp 0.845873064038263 0.620326588082472 0.90649486 0.8365841 prediction 0.451092951911582 Functional Loss - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39867924 chr6:39867926 nonsynonymous SNV 0.750 4 23 hm5C_associated_SNPs_78005 0 0 0 0 3 DAAM2 chr6:39867984 5'GT 39867984 Upstream 59bp
chr10 82185704 82185704 1 + G T UCEC 82185702 + 82185682 82185722 41 GCAGTGGTAAAGGAGCACATCAGGACTGAAGTGAAGGATTT GCAGTGGTAAAGGAGCACATCATGACTGAAGTGAAGGATTT < 41bp 0.89761386136976 0.672069202915468 0.37590364 0.07903007 prediction 0.451089316908583 Functional Loss - FAM213A ENSG00000122378 CDS Human protein_coding chr10:82185702 chr10:82185704 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_78006 0 0 1 0 2 FAM213A chr10:82185622 3'AG 82185622 Downstream 83bp
chr10 82185704 82185704 1 + G T UCEC 82185702 + 82185682 82185722 41 GCAGTGGTAAAGGAGCACATCAGGACTGAAGTGAAGGATTT GCAGTGGTAAAGGAGCACATCATGACTGAAGTGAAGGATTT < 41bp 0.89761386136976 0.672069202915468 0.37590364 0.07903007 prediction 0.451089316908583 Functional Loss - FAM213A ENSG00000122378 CDS Human protein_coding chr10:82185702 chr10:82185704 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_78006 0 0 1 0 2 FAM213A chr10:82185762 5'GT 82185762 Upstream 59bp
chr1 158047906 158047906 1 + C T BLCA 158047904 + 158047884 158047924 41 CACGGAGGCCGCCCTGCGCTCTCGGCGGGCCAAACTCACCG CACGGAGGCCGCCCTGCGCTCTTGGCGGGCCAAACTCACCG < 41bp 0.824207491525169 0.598665134893806 0.26210734 0.17299405 prediction 0.451084713262726 Functional Loss - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158047904 chr1:158047906 nonsynonymous SNV 0.988 3 23 hm5C_associated_SNPs_78008 0 0 0 0 1 KIRREL chr1:158047930 5'GT 158047930 Upstream 25bp
chr3 114014718 114014718 1 + T C UCEC 114014717 + 114014697 114014737 41 TTCCTGGAGGTCCTAGAAAGCTCAGGTATTCCTGCTGGAGC TTCCTGGAGGTCCTAGAAAGCCCAGGTATTCCTGCTGGAGC < 41bp 0.782174539646201 0.556636337775164 0.29504097 0.7878698 prediction 0.451076403742074 Functional Loss - TIGIT ENSG00000181847 CDS Human protein_coding chr3:114014717 chr3:114014718 nonsynonymous SNV 0.889 2 22 hm5C_associated_SNPs_78013 0 0 0 0 1 TIGIT chr3:114014721 5'GT 114014721 Upstream 4bp
chrX 48374470 48374470 1 + G A GBM 48374467 + 48374447 48374487 41 AGTCCTCCGGAAGCGCCTGGCTCGGATCCTCAGTGCCTGTG AGTCCTCCGGAAGCGCCTGGCTCAGATCCTCAGTGCCTGTG < 41bp 0.768117359204933 0.54258214924847 0.21454397 0.1723679 prediction 0.451070419912926 Functional Loss - PORCN ENSG00000102312 CDS Human protein_coding chrX:48374467 chrX:48374470 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_78014 1 0 0 0 2 PORCN chrX:48374449 3'AG 48374449 Downstream 22bp
chrX 48374470 48374470 1 + G A GBM 48374467 + 48374447 48374487 41 AGTCCTCCGGAAGCGCCTGGCTCGGATCCTCAGTGCCTGTG AGTCCTCCGGAAGCGCCTGGCTCAGATCCTCAGTGCCTGTG < 41bp 0.768117359204933 0.54258214924847 0.21454397 0.1723679 prediction 0.451070419912926 Functional Loss - PORCN ENSG00000102312 CDS Human protein_coding chrX:48374467 chrX:48374470 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_78014 1 0 0 0 2 PORCN chrX:48374534 5'GT 48374534 Upstream 65bp
chr12 96915721 96915721 1 + A C UCEC 96915717 + 96915697 96915737 41 CTCAAAATCCCAGGAAGAATCGCGAAGATATTTTCGAGAGG CTCAAAATCCCAGGAAGAATCGCGCAGATATTTTCGAGAGG < 41bp 0.725535105943704 0.337451405287733 0.52709705 0.3814989 prediction 0.451070211887409 Functional Loss - CFAP54 ENSG00000188596 CDS Human protein_coding chr12:96915717 chr12:96915721 synonymous SNV . 0 25 hm5C_associated_SNPs_78015 0 0 0 0 2 CFAP54 chr12:96915635 3'AG 96915635 Downstream 87bp
chr12 96915721 96915721 1 + A C UCEC 96915717 + 96915697 96915737 41 CTCAAAATCCCAGGAAGAATCGCGAAGATATTTTCGAGAGG CTCAAAATCCCAGGAAGAATCGCGCAGATATTTTCGAGAGG < 41bp 0.725535105943704 0.337451405287733 0.52709705 0.3814989 prediction 0.451070211887409 Functional Loss - CFAP54 ENSG00000188596 CDS Human protein_coding chr12:96915717 chr12:96915721 synonymous SNV . 0 25 hm5C_associated_SNPs_78015 0 0 0 0 2 CFAP54 chr12:96915748 5'GT 96915748 Upstream 28bp
chr18 61465848 61465848 1 + G A SKCM 61465845 + 61465825 61465865 41 TTTTTTTCAAAAGGCAAAATCAAGAACGTGATTGGTGAAGG TTTTTTTCAAAAGGCAAAATCAAAAACGTGATTGGTGAAGG < 41bp 0.7255281451672 0.499673652768999 0.28334972 0.2128357 prediction 0.451056290334401 Functional Loss - SERPINB7 ENSG00000166396 CDS Human protein_coding chr18:61465845 chr18:61465848 synonymous SNV . 0 24 hm5C_associated_SNPs_78017 0 0 0 0 1 SERPINB7 chr18:61465838 3'AG 61465838 Downstream 11bp
chr1 154294533 154294533 1 + C T STAD 154294531 + 154294511 154294551 41 ATCTACGTGGGTGGTAACGTCTCAGGTGAGGAGGGTGGGGT ATCTACGTGGGTGGTAACGTCTTAGGTGAGGAGGGTGGGGT < 41bp 0.725526598144513 0.466622964076611 0.32685542 0.25148997 prediction 0.451053196289026 Functional Loss - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154294531 chr1:154294533 nonsynonymous SNV 0.979 5 23 hm5C_associated_SNPs_78019 0 0 0 0 1 AQP10 chr1:154294535 5'GT 154294535 Upstream 3bp
chr19 5131486 5131486 1 + G T LUSC 5131483 + 5131463 5131503 41 AGTTTCCCCCATGGAGCTGACGGGGCCAGAGGACGGTGCAG AGTTTCCCCCATGGAGCTGACGGTGCCAGAGGACGGTGCAG < 41bp 0.725526075190465 0.316373259507922 0.91595626 0.65354043 prediction 0.451052150380929 Functional Loss - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5131483 chr19:5131486 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_78020 0 0 1 0 1 KDM4B chr19:5131556 5'GT 5131556 Upstream 71bp
chr7 100861498 100861498 1 + G T LUAD 100861496 + 100861476 100861516 41 AATGGTGGAGAAGAAAACTTCGGGTATGTGAGCCCCCGCGG AATGGTGGAGAAGAAAACTTCGTGTATGTGAGCCCCCGCGG < 41bp 0.902621400978868 0.677097961213761 0.8939116 0.30355835 prediction 0.451046879530214 Functional Loss - ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100861496 chr7:100861498 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_78021 0 0 1 0 1 ZNHIT1 chr7:100861498 5'GT 100861498 Upstream 1bp
chr5 78379148 78379148 1 + G A UCEC 78379145 + 78379125 78379165 41 GTGCAGCCTCTGGGGTTCCACGCGCCTGACTGTGGCAAAGA GTGCAGCCTCTGGGGTTCCACGCACCTGACTGTGGCAAAGA < 41bp 0.789301631814912 0.563781804647996 0.3268635 0.14982155 prediction 0.451039654333832 Functional Loss - BHMT2 ENSG00000132840 CDS Human protein_coding chr5:78379145 chr5:78379148 synonymous SNV . 0 24 hm5C_associated_SNPs_78024 0 0 0 0 1 BHMT2 chr5:78379197 5'GT 78379197 Upstream 50bp
chr2 238647880 238647880 1 + G A UCEC 238647877 + 238647857 238647897 41 CGGTGGCTGTGTGGGCAGCCCTCGGAGTACAGCGGCCACCT CGGTGGCTGTGTGGGCAGCCCTCAGAGTACAGCGGCCACCT < 41bp 0.78163429139127 0.556119956886824 0.7985524 0.3315053 prediction 0.451028669008892 Functional Loss - LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238647877 chr2:238647880 synonymous SNV . 0 24 hm5C_associated_SNPs_78025 0 0 1 0 2 LRRFIP1 chr2:238647875 3'AG 238647875 Downstream 6bp
chr2 238647880 238647880 1 + G A UCEC 238647877 + 238647857 238647897 41 CGGTGGCTGTGTGGGCAGCCCTCGGAGTACAGCGGCCACCT CGGTGGCTGTGTGGGCAGCCCTCAGAGTACAGCGGCCACCT < 41bp 0.78163429139127 0.556119956886824 0.7985524 0.3315053 prediction 0.451028669008892 Functional Loss - LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238647877 chr2:238647880 synonymous SNV . 0 24 hm5C_associated_SNPs_78025 0 0 1 0 2 LRRFIP1 chr2:238647952 5'GT 238647952 Upstream 73bp
chr3 38141888 38141888 1 + G A PAAD 38141885 + 38141865 38141905 41 GCCAGCATCTGGAGACCGTCCTGGAGCTGGAGGTGGAAAAT GCCAGCATCTGGAGACCGTCCTGAAGCTGGAGGTGGAAAAT < 41bp 0.77168653278428 0.546195154020044 0.5054575 0.32347372 prediction 0.450982757528473 Functional Loss - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38141885 chr3:38141888 nonsynonymous SNV 0.980 3 24 hm5C_associated_SNPs_78031 0 0 0 0 1 DLEC1 chr3:38141916 5'GT 38141916 Upstream 29bp
chr11 59829991 59829991 1 + G T rs148106111 59829989 + 59829969 59830009 41 TTCTGGCTTTGGGTGTCTTTCTGGGTTCCTTGCAATACCCA TTCTGGCTTTGGGTGTCTTTCTTGGTTCCTTGCAATACCCA < 41bp 0.903046668279077 0.677557483715766 0.9185419 0.05850792 prediction 0.450978369126622 Functional Loss - MS4A3 ENSG00000149516 CDS Human protein_coding chr11:59829989 chr11:59829991 synonymous SNV . 0 23 hm5C_associated_SNPs_78032 0 0 0 0 2 MS4A3 chr11:59829941 3'AG 59829941 Downstream 51bp
chr11 59829991 59829991 1 + G T rs148106111 59829989 + 59829969 59830009 41 TTCTGGCTTTGGGTGTCTTTCTGGGTTCCTTGCAATACCCA TTCTGGCTTTGGGTGTCTTTCTTGGTTCCTTGCAATACCCA < 41bp 0.903046668279077 0.677557483715766 0.9185419 0.05850792 prediction 0.450978369126622 Functional Loss - MS4A3 ENSG00000149516 CDS Human protein_coding chr11:59829989 chr11:59829991 synonymous SNV . 0 23 hm5C_associated_SNPs_78032 0 0 0 0 2 MS4A3 chr11:59830078 5'GT 59830078 Upstream 88bp
chr7 148949845 148949845 1 + T C rs79258601 148949844 + 148949824 148949864 41 CGGAGTTGGGTACAGAGATGCTGGGTGACTTGGAAGAGGAA CGGAGTTGGGTACAGAGATGCCGGGTGACTTGGAAGAGGAA < 41bp 0.725485863813115 0.477960073885453 0.77868056 0.8959056 prediction 0.45097172762623 Functional Loss - ZNF212 ENSG00000170260 CDS Human protein_coding chr7:148949844 chr7:148949845 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_78034 0 0 1 0 2 ZNF212 chr7:148949797 3'AG 148949797 Downstream 49bp
chr7 148949845 148949845 1 + T C rs79258601 148949844 + 148949824 148949864 41 CGGAGTTGGGTACAGAGATGCTGGGTGACTTGGAAGAGGAA CGGAGTTGGGTACAGAGATGCCGGGTGACTTGGAAGAGGAA < 41bp 0.725485863813115 0.477960073885453 0.77868056 0.8959056 prediction 0.45097172762623 Functional Loss - ZNF212 ENSG00000170260 CDS Human protein_coding chr7:148949844 chr7:148949845 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_78034 0 0 1 0 2 ZNF212 chr7:148949886 5'GT 148949886 Upstream 42bp
chr1 26885418 26885418 1 + C T SKCM 26885416 + 26885396 26885436 41 GCCCCGCAGGCACCCCTGCACTCGGTGGTACAGGTGAGGGG GCCCCGCAGGCACCCCTGCACTTGGTGGTACAGGTGAGGGG < 41bp 0.830136678224322 0.604657306054566 0.25201195 0.2998167 prediction 0.450958744339512 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26885416 chr1:26885418 nonsynonymous SNV 0.871 1 23 hm5C_associated_SNPs_78040 0 0 1 0 1 RPS6KA1 chr1:26885428 5'GT 26885428 Upstream 11bp
chr16 1888083 1888083 1 + G A UCEC 1888080 + 1888060 1888100 41 CTATCACAGCTCACTGCAGCCTCGAACTCCCGGGGTCAAGC CTATCACAGCTCACTGCAGCCTCAAACTCCCGGGGTCAAGC < 41bp 0.755015866938446 0.529541658651052 0.8328681 0.4200231 prediction 0.450948416574788 Functional Loss - FAHD1 ENSG00000180185 CDS Human protein_coding chr16:1888080 chr16:1888083 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_78043 0 0 0 0 2 FAHD1 chr16:1888017 3'AG 1888017 Downstream 67bp
chr16 1888083 1888083 1 + G A UCEC 1888080 + 1888060 1888100 41 CTATCACAGCTCACTGCAGCCTCGAACTCCCGGGGTCAAGC CTATCACAGCTCACTGCAGCCTCAAACTCCCGGGGTCAAGC < 41bp 0.755015866938446 0.529541658651052 0.8328681 0.4200231 prediction 0.450948416574788 Functional Loss - FAHD1 ENSG00000180185 CDS Human protein_coding chr16:1888080 chr16:1888083 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_78043 0 0 0 0 2 FAHD1 chr16:1888135 5'GT 1888135 Upstream 53bp
chr12 109278890 109278890 1 + G A LUSC 109278887 + 109278867 109278907 41 CCACTGGACATAAAGGTCTACGCGGACCGCTTCACCCCACT CCACTGGACATAAAGGTCTACGCAGACCGCTTCACCCCACT < 41bp 0.77658429787739 0.551123337797815 0.40201038 0.17972696 prediction 0.450921920159152 Functional Loss - DAO ENSG00000110887 CDS Human protein_coding chr12:109278887 chr12:109278890 synonymous SNV . 0 24 hm5C_associated_SNPs_78047 0 0 0 0 1 DAO chr12:109278976 5'GT 109278976 Upstream 87bp
chr3 42240734 42240734 1 + T C STAD 42240733 + 42240713 42240753 41 GCAGTTGGAAGAGGCCGAGTCTCCAGACATCACGTACGGCC GCAGTTGGAAGAGGCCGAGTCCCCAGACATCACGTACGGCC < 41bp 0.725451845688353 0.453443418792523 0.9391922 0.16197494 prediction 0.450903691376705 Functional Loss - TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42240733 chr3:42240734 synonymous SNV . 0 22 hm5C_associated_SNPs_78054 0 0 1 0 2 TRAK1 chr3:42240669 3'AG 42240669 Downstream 66bp
chr3 42240734 42240734 1 + T C STAD 42240733 + 42240713 42240753 41 GCAGTTGGAAGAGGCCGAGTCTCCAGACATCACGTACGGCC GCAGTTGGAAGAGGCCGAGTCCCCAGACATCACGTACGGCC < 41bp 0.725451845688353 0.453443418792523 0.9391922 0.16197494 prediction 0.450903691376705 Functional Loss - TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42240733 chr3:42240734 synonymous SNV . 0 22 hm5C_associated_SNPs_78054 0 0 1 0 2 TRAK1 chr3:42240745 5'GT 42240745 Upstream 12bp
chr16 28509310 28509310 1 + G T LUSC 28509308 + 28509288 28509328 41 AGAGGAGGTGCTGCCAACAGCTGGAGCGAGGTGAGGGCTCT AGAGGAGGTGCTGCCAACAGCTTGAGCGAGGTGAGGGCTCT < 41bp 0.894526081568097 0.669075517926832 0.8472903 0.17840168 prediction 0.45090112728253 Functional Loss - APOBR ENSG00000184730 CDS Human protein_coding chr16:28509308 chr16:28509310 nonsynonymous SNV 0.863 3 23 hm5C_associated_SNPs_78055 0 0 0 0 1 APOBR chr16:28509317 5'GT 28509317 Upstream 8bp
chr17 18145296 18145296 1 + C T BRCA 18145294 + 18145274 18145314 41 CTCTGGACATTAACTGGCCCCGCGATGCCACCCAGGCCAGG CTCTGGACATTAACTGGCCCCGTGATGCCACCCAGGCCAGG < 41bp 0.823052233067241 0.597602555649304 0.035872072 0.052497298 prediction 0.450899354835873 Functional Loss - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18145294 chr17:18145296 synonymous SNV . 0 23 hm5C_associated_SNPs_78056 0 0 1 0 2 LLGL1 chr17:18145199 3'AG 18145199 Downstream 98bp
chr17 18145296 18145296 1 + C T BRCA 18145294 + 18145274 18145314 41 CTCTGGACATTAACTGGCCCCGCGATGCCACCCAGGCCAGG CTCTGGACATTAACTGGCCCCGTGATGCCACCCAGGCCAGG < 41bp 0.823052233067241 0.597602555649304 0.035872072 0.052497298 prediction 0.450899354835873 Functional Loss - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18145294 chr17:18145296 synonymous SNV . 0 23 hm5C_associated_SNPs_78056 0 0 1 0 2 LLGL1 chr17:18145313 5'GT 18145313 Upstream 18bp
chr10 96540410 96540410 1 + G A rs4986893 96540407 + 96540387 96540427 41 ATCAGGATTGTAAGCACCCCCTGGATCCAGGTAAGGCCAAG ATCAGGATTGTAAGCACCCCCTGAATCCAGGTAAGGCCAAG < 41bp 0.746640005517243 0.521192865483222 0.051191866 0.013717324 prediction 0.450894280068041 Functional Loss - CYP2C19 ENSG00000165841 CDS Human protein_coding chr10:96540407 chr10:96540410 stopgain 0.011 0 24 hm5C_associated_SNPs_78057 4 0 0 0 1 CYP2C19 chr10:96540416 5'GT 96540416 Upstream 7bp
chr18 12308748 12308748 1 + G C CESC 12308747 + 12308727 12308767 41 CGGAGGCTACGTGGGAGACTCGGCGCTGCAGCTGGAGAGAA CGGAGGCTACGTGGGAGACTCCGCGCTGCAGCTGGAGAGAA < 41bp 0.779075202587549 0.553628524484211 0.8943635 0.6082239 prediction 0.450893356206677 Functional Loss - TUBB6 ENSG00000176014 CDS Human protein_coding chr18:12308747 chr18:12308748 synonymous SNV . 0 22 hm5C_associated_SNPs_78058 0 0 1 0 2 TUBB6 chr18:12308686 3'AG 12308686 Downstream 63bp
chr18 12308748 12308748 1 + G C CESC 12308747 + 12308727 12308767 41 CGGAGGCTACGTGGGAGACTCGGCGCTGCAGCTGGAGAGAA CGGAGGCTACGTGGGAGACTCCGCGCTGCAGCTGGAGAGAA < 41bp 0.779075202587549 0.553628524484211 0.8943635 0.6082239 prediction 0.450893356206677 Functional Loss - TUBB6 ENSG00000176014 CDS Human protein_coding chr18:12308747 chr18:12308748 synonymous SNV . 0 22 hm5C_associated_SNPs_78058 0 0 1 0 2 TUBB6 chr18:12308794 5'GT 12308794 Upstream 47bp
chr15 91308599 91308599 1 + G A COAD 91308596 + 91308576 91308616 41 GTCACTGTTGTCATTTCTCCCTTGAGATCACTTATCGTAGA GTCACTGTTGTCATTTCTCCCTTAAGATCACTTATCGTAGA < 41bp 0.725439455142362 0.494505273243789 0.032717466 0.021636724 prediction 0.450878910284724 Functional Loss - BLM ENSG00000197299 CDS Human protein_coding chr15:91308596 chr15:91308599 synonymous SNV . 0 24 hm5C_associated_SNPs_78061 0 0 1 0 2 BLM chr15:91308526 3'AG 91308526 Downstream 74bp
chr15 91308599 91308599 1 + G A COAD 91308596 + 91308576 91308616 41 GTCACTGTTGTCATTTCTCCCTTGAGATCACTTATCGTAGA GTCACTGTTGTCATTTCTCCCTTAAGATCACTTATCGTAGA < 41bp 0.725439455142362 0.494505273243789 0.032717466 0.021636724 prediction 0.450878910284724 Functional Loss - BLM ENSG00000197299 CDS Human protein_coding chr15:91308596 chr15:91308599 synonymous SNV . 0 24 hm5C_associated_SNPs_78061 0 0 1 0 2 BLM chr15:91308644 5'GT 91308644 Upstream 46bp
chr6 44121578 44121578 1 + C T UCEC 44121576 + 44121556 44121596 41 CTCTTCTTTTCCACCATGCGCACGGGTGAGGGATCCCTACC CTCTTCTTTTCCACCATGCGCATGGGTGAGGGATCCCTACC < 41bp 0.725437830357088 0.469625984330713 0.7719847 0.8386966 prediction 0.450875660714175 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44121576 chr6:44121578 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_78063 0 0 1 0 1 TMEM63B chr6:44121580 5'GT 44121580 Upstream 3bp
chr22 25625530 25625530 1 + G C LUAD 25625529 + 25625509 25625549 41 AGGAGAAGGTGTCATCTGTGCGGGTGCAGAGTGGCACGTAA AGGAGAAGGTGTCATCTGTGCCGGTGCAGAGTGGCACGTAA < 41bp 0.880544349905537 0.655107811579865 0.88208526 0.56560224 prediction 0.450873076651344 Functional Loss - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25625529 chr22:25625530 nonsynonymous SNV 0.991 2 22 hm5C_associated_SNPs_78065 0 0 0 0 1 CRYBB2 chr22:25625545 5'GT 25625545 Upstream 16bp
chr19 50309968 50309968 1 + G C LUAD 50309964 + 50309944 50309984 41 CGGCTGACCCTGCGCACCAGCAAGGAGCCCGTCTCCCGTCA CGGCTGACCCTGCGCACCAGCAAGCAGCCCGTCTCCCGTCA < 41bp 0.852480000195593 0.627043746672737 0.8910712 0.7129221 prediction 0.450872507045712 Functional Loss - AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50309964 chr19:50309968 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_78066 0 0 1 0 1 AP2A1 chr19:50309938 3'AG 50309938 Downstream 31bp
chr1 3342631 3342631 1 + G A SKCM 3342628 + 3342608 3342648 41 TCCGCAGTGAGCCAGCACCCCGGGGTCCTCACGAACCACCT TCCGCAGTGAGCCAGCACCCCGGAGTCCTCACGAACCACCT < 41bp 0.752961761866756 0.527529524374951 0.9047589 0.6433128 prediction 0.450864474983611 Functional Loss - PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3342628 chr1:3342631 synonymous SNV . 0 24 hm5C_associated_SNPs_78067 0 0 0 0 1 PRDM16 chr1:3342615 3'AG 3342615 Downstream 17bp
chr5 251542 251542 1 + C T COAD 251540 + 251520 251560 41 GACCATCTACGGAGCAGAGGCACGGAAGGAGTCACGGGGCG GACCATCTACGGAGCAGAGGCATGGAAGGAGTCACGGGGCG < 41bp 0.830662007843603 0.605234175762396 0.57155246 0.518198 prediction 0.450855664162415 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:251540 chr5:251542 nonsynonymous SNV 0.664 4 23 hm5C_associated_SNPs_78071 4 0 1 0 2 SDHA chr5:251453 3'AG 251453 Downstream 90bp
chr5 251542 251542 1 + C T COAD 251540 + 251520 251560 41 GACCATCTACGGAGCAGAGGCACGGAAGGAGTCACGGGGCG GACCATCTACGGAGCAGAGGCATGGAAGGAGTCACGGGGCG < 41bp 0.830662007843603 0.605234175762396 0.57155246 0.518198 prediction 0.450855664162415 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:251540 chr5:251542 nonsynonymous SNV 0.664 4 23 hm5C_associated_SNPs_78071 4 0 1 0 2 SDHA chr5:251583 5'GT 251583 Upstream 42bp
chr17 32583310 32583310 1 + C T COAD 32583308 + 32583288 32583328 41 AAGATCTCAGTGCAGAGGCTCGCGAGCTATAGAAGAATCAC AAGATCTCAGTGCAGAGGCTCGTGAGCTATAGAAGAATCAC < 41bp 0.846766130943292 0.621343409722871 0.3203447 0.2097041 prediction 0.450845442440841 Functional Loss - CCL2 ENSG00000108691 CDS Human protein_coding chr17:32583308 chr17:32583310 nonsynonymous SNV 0.037 0 23 hm5C_associated_SNPs_78074 0 0 0 0 2 CCL2 chr17:32583241 3'AG 32583241 Downstream 70bp
chr17 32583310 32583310 1 + C T COAD 32583308 + 32583288 32583328 41 AAGATCTCAGTGCAGAGGCTCGCGAGCTATAGAAGAATCAC AAGATCTCAGTGCAGAGGCTCGTGAGCTATAGAAGAATCAC < 41bp 0.846766130943292 0.621343409722871 0.3203447 0.2097041 prediction 0.450845442440841 Functional Loss - CCL2 ENSG00000108691 CDS Human protein_coding chr17:32583308 chr17:32583310 nonsynonymous SNV 0.037 0 23 hm5C_associated_SNPs_78074 0 0 0 0 2 CCL2 chr17:32583358 5'GT 32583358 Upstream 49bp
chr12 52282060 52282060 1 + C T rs697634 52282058 + 52282038 52282078 41 GAGACCCAGTGATTGTGCTCCGCGGAGCCTGGGCTGTGCCC GAGACCCAGTGATTGTGCTCCGTGGAGCCTGGGCTGTGCCC < 41bp 0.762865910114309 0.537445376661615 0.90977526 0.8577053 prediction 0.450841066905389 Functional Loss - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52282058 chr12:52282060 synonymous SNV . 0 23 hm5C_associated_SNPs_78076 0 0 0 0 1 ANKRD33 chr12:52282115 5'GT 52282115 Upstream 56bp
chr1 12172049 12172049 1 + G A rs2230623 12172046 + 12172026 12172066 41 CTGGACGAGGCCGGCCGCTGCACGGCCTGCGTGAGCTGTTC CTGGACGAGGCCGGCCGCTGCACAGCCTGCGTGAGCTGTTC < 41bp 0.802961836492178 0.577545640741434 0.400438 0.2531873 prediction 0.450832391501487 Functional Loss - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12172046 chr1:12172049 synonymous SNV . 0 24 hm5C_associated_SNPs_78078 0 0 0 0 2 TNFRSF8 chr1:12171955 3'AG 12171955 Downstream 95bp
chr1 12172049 12172049 1 + G A rs2230623 12172046 + 12172026 12172066 41 CTGGACGAGGCCGGCCGCTGCACGGCCTGCGTGAGCTGTTC CTGGACGAGGCCGGCCGCTGCACAGCCTGCGTGAGCTGTTC < 41bp 0.802961836492178 0.577545640741434 0.400438 0.2531873 prediction 0.450832391501487 Functional Loss - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12172046 chr1:12172049 synonymous SNV . 0 24 hm5C_associated_SNPs_78078 0 0 0 0 2 TNFRSF8 chr1:12172071 5'GT 12172071 Upstream 23bp
chr4 1806609 1806609 1 + G T UCEC 1806606 + 1806586 1806626 41 CACACCACTGGTGCGCATCGCAAGGCTGTCCTCAGGGGAGG CACACCACTGGTGCGCATCGCAATGCTGTCCTCAGGGGAGG < 41bp 0.725415645597212 0.318617821466694 0.4081987 0.14433819 prediction 0.450831291194424 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1806606 chr4:1806609 nonsynonymous SNV 0.713 5 24 hm5C_associated_SNPs_78079 0 0 1 0 3 FGFR3 chr4:1806548 3'AG 1806548 Downstream 62bp
chr4 1806609 1806609 1 + G T UCEC 1806606 + 1806586 1806626 41 CACACCACTGGTGCGCATCGCAAGGCTGTCCTCAGGGGAGG CACACCACTGGTGCGCATCGCAATGCTGTCCTCAGGGGAGG < 41bp 0.725415645597212 0.318617821466694 0.4081987 0.14433819 prediction 0.450831291194424 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1806606 chr4:1806609 nonsynonymous SNV 0.713 5 24 hm5C_associated_SNPs_78079 0 0 1 0 3 FGFR3 chr4:1806551 3'AG 1806551 Downstream 59bp
chr4 1806609 1806609 1 + G T UCEC 1806606 + 1806586 1806626 41 CACACCACTGGTGCGCATCGCAAGGCTGTCCTCAGGGGAGG CACACCACTGGTGCGCATCGCAATGCTGTCCTCAGGGGAGG < 41bp 0.725415645597212 0.318617821466694 0.4081987 0.14433819 prediction 0.450831291194424 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1806606 chr4:1806609 nonsynonymous SNV 0.713 5 24 hm5C_associated_SNPs_78079 0 0 1 0 3 FGFR3 chr4:1806696 5'GT 1806696 Upstream 88bp
chr17 1650432 1650432 1 + G A UCEC 1650429 + 1650409 1650449 41 TGGGCCCCGGCGCGTTCCGACTGGCTGCCAGGATGTACCTG TGGGCCCCGGCGCGTTCCGACTGACTGCCAGGATGTACCTG < 41bp 0.725413880004755 0.465296515900433 0.095786035 0.02754724 prediction 0.45082776000951 Functional Loss - SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1650429 chr17:1650432 nonsynonymous SNV 0.992 5 24 hm5C_associated_SNPs_78080 0 0 1 0 1 SERPINF2 chr17:1650456 5'GT 1650456 Upstream 25bp
chr19 15726592 15726592 1 + G A SKCM 15726589 + 15726569 15726609 41 CTCCGGTGTTTCCCGCAGCCCCGGAAACAGAACTGGTTCTT CTCCGGTGTTTCCCGCAGCCCCGAAAACAGAACTGGTTCTT < 41bp 0.740064411264147 0.514653937948294 0.43504357 0.1736443 prediction 0.450820946631705 Functional Loss - CYP4F8 ENSG00000186526 ncRNA_exonic Human protein_coding chr19:15726589 chr19:15726592 . . 0 24 hm5C_associated_SNPs_78082 0 0 0 0 1 CYP4F8 chr19:15726625 5'GT 15726625 Upstream 34bp
chr20 31652596 31652596 1 + C T rs2093066 31652594 + 31652574 31652614 41 CCACTGTACCTCTTCAACACCACGTTTGGACTCCTGCAGAC CCACTGTACCTCTTCAACACCATGTTTGGACTCCTGCAGAC < 41bp 0.725408910518377 0.451609932082702 0.07115319 0.09658271 prediction 0.450817821036753 Functional Loss - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31652594 chr20:31652596 nonsynonymous SNV 0.691 0 23 hm5C_associated_SNPs_78083 0 0 0 0 1 BPIFB3 chr20:31652651 5'GT 31652651 Upstream 56bp
chr20 31652597 31652597 1 + G A UCEC 31652594 + 31652574 31652614 41 CCACTGTACCTCTTCAACACCACGTTTGGACTCCTGCAGAC CCACTGTACCTCTTCAACACCACATTTGGACTCCTGCAGAC < 41bp 0.725408910518377 0.477833485553585 0.07115319 0.09484178 prediction 0.450817821036753 Functional Loss - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31652594 chr20:31652597 synonymous SNV . 0 24 hm5C_associated_SNPs_78084 0 0 0 0 1 BPIFB3 chr20:31652651 5'GT 31652651 Upstream 55bp
chr8 143570442 143570442 1 + G A SKCM 143570439 + 143570419 143570459 41 GTGGTGGGCACCGTGCTCTACAGGAACCTGGGCAGCTTCCT GTGGTGGGCACCGTGCTCTACAGAAACCTGGGCAGCTTCCT < 41bp 0.725406347125914 0.480158392649605 0.4594994 0.3611493 prediction 0.450812694251829 Functional Loss - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143570439 chr8:143570442 synonymous SNV . 0 24 hm5C_associated_SNPs_78086 0 0 0 0 2 ADGRB1 chr8:143570396 3'AG 143570396 Downstream 47bp
chr8 143570442 143570442 1 + G A SKCM 143570439 + 143570419 143570459 41 GTGGTGGGCACCGTGCTCTACAGGAACCTGGGCAGCTTCCT GTGGTGGGCACCGTGCTCTACAGAAACCTGGGCAGCTTCCT < 41bp 0.725406347125914 0.480158392649605 0.4594994 0.3611493 prediction 0.450812694251829 Functional Loss - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143570439 chr8:143570442 synonymous SNV . 0 24 hm5C_associated_SNPs_78086 0 0 0 0 2 ADGRB1 chr8:143570471 5'GT 143570471 Upstream 30bp
chr10 89717673 89717673 1 + G A BLCA 89717670 + 89717650 89717690 41 TTCCTCCAATTCAGGACCCACACGACGGGAAGACAAGTTCA TTCCTCCAATTCAGGACCCACACAACGGGAAGACAAGTTCA < 41bp 0.739179109090182 0.513780136032038 0.027666122 0.0059271753 prediction 0.450797946116289 Functional Loss - PTEN ENSG00000171862 CDS Human protein_coding chr10:89717670 chr10:89717673 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_78088 9 0 1 0 1 PTEN chr10:89717610 3'AG 89717610 Downstream 64bp
chr20 34021723 34021723 1 + G A SKCM 34021720 + 34021700 34021740 41 AGTGCTGCTACCTGCAGCCACACGACTCCACGACCATGTCC AGTGCTGCTACCTGCAGCCACACAACTCCACGACCATGTCC < 41bp 0.782265333960043 0.556870382853759 0.13683924 0.0820404 prediction 0.450789902212568 Functional Loss - GDF5;GDF5OS ENSG00000125965 CDS Human other chr20:34021720 chr20:34021723 nonsynonymous SNV 0.955 5 24 hm5C_associated_SNPs_78091 0 0 0 0 1 GDF5OS chr20:34021650 3'AG 34021650 Downstream 74bp
chr19 547333 547333 1 + C T GBM 547331 + 547311 547351 41 CCGGGAGGTGATCCCCCACTCGCGCCCGTACATGGCCTCAC CCGGGAGGTGATCCCCCACTCGTGCCCGTACATGGCCTCAC < 41bp 0.775090431940575 0.549695702218571 0.5075797 0.5879912 prediction 0.450789459444009 Functional Loss - GZMM ENSG00000197540 CDS Human protein_coding chr19:547331 chr19:547333 nonsynonymous SNV 0.014 4 23 hm5C_associated_SNPs_78092 0 0 0 0 2 GZMM chr19:547280 3'AG 547280 Downstream 54bp
chr19 547333 547333 1 + C T GBM 547331 + 547311 547351 41 CCGGGAGGTGATCCCCCACTCGCGCCCGTACATGGCCTCAC CCGGGAGGTGATCCCCCACTCGTGCCCGTACATGGCCTCAC < 41bp 0.775090431940575 0.549695702218571 0.5075797 0.5879912 prediction 0.450789459444009 Functional Loss - GZMM ENSG00000197540 CDS Human protein_coding chr19:547331 chr19:547333 nonsynonymous SNV 0.014 4 23 hm5C_associated_SNPs_78092 0 0 0 0 2 GZMM chr19:547284 3'AG 547284 Downstream 50bp
chr2 200824584 200824584 1 + C T SKCM 200824581 + 200824561 200824601 41 TTTACATCAACAGGAGACATCTCCATTTACTATGATGAGAA TTTACATCAACAGGAGACATCTCTATTTACTATGATGAGAA < 41bp 0.725393714174615 0.492842352916383 0.9511856 0.80394673 prediction 0.45078742834923 Functional Loss - MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200824581 chr2:200824584 synonymous SNV . 0 24 hm5C_associated_SNPs_78093 0 0 1 0 1 MAIP1 chr2:200824603 5'GT 200824603 Upstream 20bp
chr6 35426085 35426085 1 + G T BLCA 35426083 + 35426063 35426103 41 TCTGTAAGCAGATGGACTTGCTGTGTGCCCAGCTGCAGCTC TCTGTAAGCAGATGGACTTGCTTTGTGCCCAGCTGCAGCTC < 41bp 0.725388433117341 0.363593192238553 0.07993108 0.0618971 prediction 0.450776866234682 Functional Loss - FANCE ENSG00000112039 CDS Human protein_coding chr6:35426083 chr6:35426085 synonymous SNV . 0 23 hm5C_associated_SNPs_78099 0 0 0 0 1 FANCE chr6:35426074 3'AG 35426074 Downstream 12bp
chr17 38249352 38249352 1 + C T COAD 38249350 + 38249330 38249370 41 GGCGGGTCACTGGGCGTCCACCCGGAAGGACAGCAGCTTCT GGCGGGTCACTGGGCGTCCACCTGGAAGGACAGCAGCTTCT < 41bp 0.725384429657538 0.469435261200136 0.45081446 0.37166956 prediction 0.450768859315076 Functional Loss - NR1D1;THRA ENSG00000126351;ENSG00000126368 CDS Human protein_coding chr17:38249350 chr17:38249352 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_78100 0 0 0 0 1 THRA chr17:38249273 3'AG 38249273 Downstream 80bp
chr2 228158016 228158016 1 + G A SKCM 228158013 + 228157993 228158033 41 TGAGGGAGCCCCTGGAAGTCCTGGAAGTCCTGGCCTCCCAG TGAGGGAGCCCCTGGAAGTCCTGAAAGTCCTGGCCTCCCAG < 41bp 0.788849128744238 0.563466153747075 0.84211206 0.3559211 prediction 0.450765949994327 Functional Loss - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228158013 chr2:228158016 nonsynonymous SNV 0.988 5 24 hm5C_associated_SNPs_78102 0 0 0 0 1 COL4A3 chr2:228158033 5'GT 228158033 Upstream 18bp
chr11 20676318 20676318 1 + C T BLCA 20676316 + 20676296 20676336 41 GCCCATTCTTAGCTCAACACCGCGGGGAGCGTTACAAGAAC GCCCATTCTTAGCTCAACACCGTGGGGAGCGTTACAAGAAC < 41bp 0.825993480908663 0.600610535477124 0.75802445 0.8071866 prediction 0.450765890863078 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20676316 chr11:20676318 synonymous SNV . 0 23 hm5C_associated_SNPs_78103 0 0 0 0 1 SLC6A5 chr11:20676259 3'AG 20676259 Downstream 60bp
chr20 36993331 36993331 1 + G A SKCM 36993328 + 36993308 36993348 41 AAAATGGTCTACTTTGCCATCTCGGATTATGTCTTCAACAC AAAATGGTCTACTTTGCCATCTCAGATTATGTCTTCAACAC < 41bp 0.772813962032582 0.54743254727949 0.15580195 0.13661951 prediction 0.450762829506183 Functional Loss - LBP ENSG00000129988 CDS Human protein_coding chr20:36993328 chr20:36993331 synonymous SNV . 0 24 hm5C_associated_SNPs_78105 0 0 0 0 1 LBP chr20:36993406 5'GT 36993406 Upstream 76bp
chr1 110768679 110768679 1 + G A BLCA 110768676 + 110768656 110768696 41 ACCCAACCCCTGGCCTCCTCCCCGACCCCCGAGGAGCGCCG ACCCAACCCCTGGCCTCCTCCCCAACCCCCGAGGAGCGCCG < 41bp 0.771455492252538 0.546077840428855 0.2433553 0.1947132 prediction 0.450755303647365 Functional Loss - KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110768676 chr1:110768679 synonymous SNV . 0 24 hm5C_associated_SNPs_78109 0 0 0 0 1 KCNC4 chr1:110768597 3'AG 110768597 Downstream 83bp
chr3 134268926 134268926 1 + G T SARC 134268923 + 134268903 134268943 41 AGTTGAAAGAACAGATTTTACAGGGTGAACAAAGTTACAGT AGTTGAAAGAACAGATTTTACAGTGTGAACAAAGTTACAGT < 41bp 0.725376192451982 0.336998101249287 0.6531883 0.09475407 prediction 0.450752384903964 Functional Loss - CEP63 ENSG00000182923 CDS Human protein_coding chr3:134268923 chr3:134268926 nonsynonymous SNV 0.972 1 24 hm5C_associated_SNPs_78110 0 0 1 0 1 CEP63 chr3:134268905 3'AG 134268905 Downstream 22bp
chr4 55561862 55561862 1 + G A rs56411694 55561859 + 55561839 55561879 41 AATAAGCAGAATGAATGGATCACGGAAAAGGCAGAAGCCAC AATAAGCAGAATGAATGGATCACAGAAAAGGCAGAAGCCAC < 41bp 0.725376056482794 0.490385373855811 0.18757343 0.024786562 prediction 0.450752112965588 Functional Loss - KIT ENSG00000157404 CDS Human protein_coding chr4:55561859 chr4:55561862 synonymous SNV . 0 24 hm5C_associated_SNPs_78111 1 0 0 0 1 KIT chr4:55561947 5'GT 55561947 Upstream 86bp
chr12 108959132 108959132 1 + T C HNSC 108959131 + 108959111 108959151 41 AAAGGGGAAGATTGTGGATGCTAGGTTTAAAACATTTGGCT AAAGGGGAAGATTGTGGATGCCAGGTTTAAAACATTTGGCT < 41bp 0.725367771564278 0.488839224748016 0.13281146 0.27113962 prediction 0.450735543128556 Functional Loss - ISCU ENSG00000136003 CDS Human protein_coding chr12:108959131 chr12:108959132 synonymous SNV . 0 22 hm5C_associated_SNPs_78116 0 0 1 0 2 ISCU chr12:108959097 3'AG 108959097 Downstream 36bp
chr12 108959132 108959132 1 + T C HNSC 108959131 + 108959111 108959151 41 AAAGGGGAAGATTGTGGATGCTAGGTTTAAAACATTTGGCT AAAGGGGAAGATTGTGGATGCCAGGTTTAAAACATTTGGCT < 41bp 0.725367771564278 0.488839224748016 0.13281146 0.27113962 prediction 0.450735543128556 Functional Loss - ISCU ENSG00000136003 CDS Human protein_coding chr12:108959131 chr12:108959132 synonymous SNV . 0 22 hm5C_associated_SNPs_78116 0 0 1 0 2 ISCU chr12:108959207 5'GT 108959207 Upstream 76bp
chr9 82336773 82336773 1 + G T OV 82336771 + 82336751 82336791 41 CCTGGGACCTGCGCGAGGGGCGGCAGCTGCAGCAGCACGAC CCTGGGACCTGCGCGAGGGGCGTCAGCTGCAGCAGCACGAC < 41bp 0.90654494506907 0.681178339009287 0.9079704 0.82966 prediction 0.450733212119566 Functional Loss - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82336771 chr9:82336773 synonymous SNV . 0 23 hm5C_associated_SNPs_78118 0 0 0 0 1 TLE4 chr9:82336803 5'GT 82336803 Upstream 31bp
chr12 124181003 124181003 1 + A T UCEC 124180999 + 124180979 124181019 41 CCTGTCCGAGCTCTAAATATCAACAGGATGAATAATGTCAC CCTGTCCGAGCTCTAAATATCAACTGGATGAATAATGTCAC < 41bp 0.725365494480782 0.391982128754475 0.1701827 0.115181684 prediction 0.450730988961564 Functional Loss - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124180999 chr12:124181003 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_78119 0 0 1 0 2 TCTN2 chr12:124180962 3'AG 124180962 Downstream 42bp
chr12 124181003 124181003 1 + A T UCEC 124180999 + 124180979 124181019 41 CCTGTCCGAGCTCTAAATATCAACAGGATGAATAATGTCAC CCTGTCCGAGCTCTAAATATCAACTGGATGAATAATGTCAC < 41bp 0.725365494480782 0.391982128754475 0.1701827 0.115181684 prediction 0.450730988961564 Functional Loss - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124180999 chr12:124181003 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_78119 0 0 1 0 2 TCTN2 chr12:124181042 5'GT 124181042 Upstream 40bp
chr19 990282 990282 1 + C T UCEC 990280 + 990260 990300 41 AGGCACGTCTGGTCTCACCACGCGCTCCCCATCACGGACCT AGGCACGTCTGGTCTCACCACGTGCTCCCCATCACGGACCT < 41bp 0.808651774369572 0.583291830721985 0.44453144 0.4932682 prediction 0.450719887295174 Functional Loss - WDR18 ENSG00000065268 CDS Human protein_coding chr19:990280 chr19:990282 nonsynonymous SNV 0.958 1 23 hm5C_associated_SNPs_78123 0 0 1 0 1 WDR18 chr19:990364 5'GT 990364 Upstream 83bp
chr6 52319007 52319007 1 + G A COAD 52319004 + 52318984 52319024 41 CGGTGGAAATTCGAGAGGTCCACGAACGGAATGATGGGAGA CGGTGGAAATTCGAGAGGTCCACAAACGGAATGATGGGAGA < 41bp 0.758271284306093 0.532913758274403 0.14425275 0.09760007 prediction 0.45071505206338 Functional Loss - EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52319004 chr6:52319007 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_78124 0 0 0 0 1 EFHC1 chr6:52319085 5'GT 52319085 Upstream 79bp
chr6 112375526 112375526 1 + T C HNSC 112375525 + 112375505 112375545 41 CAATGAACAAGCGGCGACTTCTCTACCCCTCAGGGTGGCTC CAATGAACAAGCGGCGACTTCCCTACCCCTCAGGGTGGCTC < 41bp 0.725357146066297 0.480533608677838 0.90184605 0.14909852 prediction 0.450714292132593 Functional Loss - WISP3 ENSG00000112761 CDS Human protein_coding chr6:112375525 chr6:112375526 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_78125 0 0 0 0 1 WISP3 chr6:112375608 5'GT 112375608 Upstream 83bp
chr17 79952715 79952715 1 + C T THCA 79952713 + 79952693 79952733 41 CCAGGGAGTGCCTGCAGCACCCCGGCGGGGCCACCCCAGTC CCAGGGAGTGCCTGCAGCACCCTGGCGGGGCCACCCCAGTC < 41bp 0.774728476591281 0.549372630592329 0.07655555 0.111144215 prediction 0.450711691997904 Functional Loss - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79952713 chr17:79952715 synonymous SNV . 0 23 hm5C_associated_SNPs_78127 0 0 1 0 2 ASPSCR1 chr17:79952697 3'AG 79952697 Downstream 19bp
chr17 79952715 79952715 1 + C T THCA 79952713 + 79952693 79952733 41 CCAGGGAGTGCCTGCAGCACCCCGGCGGGGCCACCCCAGTC CCAGGGAGTGCCTGCAGCACCCTGGCGGGGCCACCCCAGTC < 41bp 0.774728476591281 0.549372630592329 0.07655555 0.111144215 prediction 0.450711691997904 Functional Loss - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79952713 chr17:79952715 synonymous SNV . 0 23 hm5C_associated_SNPs_78127 0 0 1 0 2 ASPSCR1 chr17:79952754 5'GT 79952754 Upstream 40bp
chr14 72205804 72205804 1 + G T STAD 72205801 + 72205781 72205821 41 GAGAGGACAACCTGAGGCTACAGGAGGAGTCCCAGAACGCC GAGAGGACAACCTGAGGCTACAGTAGGAGTCCCAGAACGCC < 41bp 0.725346983014305 0.346507329507067 0.70075905 0.24864969 prediction 0.450693966028609 Functional Loss - SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72205801 chr14:72205804 stopgain 1.000 1 24 hm5C_associated_SNPs_78130 0 0 0 0 1 SIPA1L1 chr14:72205735 3'AG 72205735 Downstream 70bp
chr20 36956026 36956026 1 + A C rs5741809 36956025 + 36956005 36956045 41 ATGGAGGTCAGCGCCGAGTCCAACAGGCTTGTTGGAGAGCT ATGGAGGTCAGCGCCGAGTCCCACAGGCTTGTTGGAGAGCT < 41bp 0.725346732149712 0.467387387606003 0.23430303 0.14292243 prediction 0.450693464299423 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36956025 chr20:36956026 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_78131 0 0 0 0 2 BPI chr20:36955990 3'AG 36955990 Downstream 37bp
chr20 36956026 36956026 1 + A C rs5741809 36956025 + 36956005 36956045 41 ATGGAGGTCAGCGCCGAGTCCAACAGGCTTGTTGGAGAGCT ATGGAGGTCAGCGCCGAGTCCCACAGGCTTGTTGGAGAGCT < 41bp 0.725346732149712 0.467387387606003 0.23430303 0.14292243 prediction 0.450693464299423 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36956025 chr20:36956026 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_78131 0 0 0 0 2 BPI chr20:36956057 5'GT 36956057 Upstream 32bp
chr20 36956029 36956029 1 + A C SKCM 36956025 + 36956005 36956045 41 ATGGAGGTCAGCGCCGAGTCCAACAGGCTTGTTGGAGAGCT ATGGAGGTCAGCGCCGAGTCCAACCGGCTTGTTGGAGAGCT < 41bp 0.725346732149712 0.309792924537838 0.23430303 0.12588829 prediction 0.450693464299423 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36956025 chr20:36956029 synonymous SNV . 0 25 hm5C_associated_SNPs_78132 0 0 0 0 2 BPI chr20:36955990 3'AG 36955990 Downstream 40bp
chr20 36956029 36956029 1 + A C SKCM 36956025 + 36956005 36956045 41 ATGGAGGTCAGCGCCGAGTCCAACAGGCTTGTTGGAGAGCT ATGGAGGTCAGCGCCGAGTCCAACCGGCTTGTTGGAGAGCT < 41bp 0.725346732149712 0.309792924537838 0.23430303 0.12588829 prediction 0.450693464299423 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36956025 chr20:36956029 synonymous SNV . 0 25 hm5C_associated_SNPs_78132 0 0 0 0 2 BPI chr20:36956057 5'GT 36956057 Upstream 29bp
chr2 37464951 37464951 1 + G T PAAD 37464949 + 37464929 37464969 41 GATGGCCACTGGAAAAAGCACAGCTTTCCAGCTGGTGGAAC GATGGCCACTGGAAAAAGCACATCTTTCCAGCTGGTGGAAC < 41bp 0.725345907835807 0.375635670098909 0.050920874 0.072203875 prediction 0.450691815671615 Functional Loss - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37464949 chr2:37464951 nonsynonymous SNV 0.850 0 23 hm5C_associated_SNPs_78134 0 0 1 5 2 NDUFAF7 chr2:37464900 3'AG 37464900 Downstream 52bp
chr2 37464951 37464951 1 + G T PAAD 37464949 + 37464929 37464969 41 GATGGCCACTGGAAAAAGCACAGCTTTCCAGCTGGTGGAAC GATGGCCACTGGAAAAAGCACATCTTTCCAGCTGGTGGAAC < 41bp 0.725345907835807 0.375635670098909 0.050920874 0.072203875 prediction 0.450691815671615 Functional Loss - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37464949 chr2:37464951 nonsynonymous SNV 0.850 0 23 hm5C_associated_SNPs_78134 0 0 1 5 2 NDUFAF7 chr2:37464978 5'GT 37464978 Upstream 28bp
chr19 2873574 2873574 1 + C T SKCM 2873572 + 2873552 2873592 41 TGAATCCTGCTCAGAGAAAACTCTACAGAGATGTCATGCTG TGAATCCTGCTCAGAGAAAACTTTACAGAGATGTCATGCTG < 41bp 0.725344753286235 0.429697719346221 0.8013343 0.0387263 prediction 0.450689506572471 Functional Loss - ZNF556 ENSG00000172000 CDS Human protein_coding chr19:2873572 chr19:2873574 synonymous SNV . 0 23 hm5C_associated_SNPs_78136 0 0 1 0 2 ZNF556 chr19:2873494 3'AG 2873494 Downstream 81bp
chr19 2873574 2873574 1 + C T SKCM 2873572 + 2873552 2873592 41 TGAATCCTGCTCAGAGAAAACTCTACAGAGATGTCATGCTG TGAATCCTGCTCAGAGAAAACTTTACAGAGATGTCATGCTG < 41bp 0.725344753286235 0.429697719346221 0.8013343 0.0387263 prediction 0.450689506572471 Functional Loss - ZNF556 ENSG00000172000 CDS Human protein_coding chr19:2873572 chr19:2873574 synonymous SNV . 0 23 hm5C_associated_SNPs_78136 0 0 1 0 2 ZNF556 chr19:2873620 5'GT 2873620 Upstream 47bp
chr6 74210321 74210321 1 + G T LUSC 74210318 + 74210298 74210338 41 TCGGGGCTGCTAGTCGCATACCCGGAGTAACACCTGCCGCC TCGGGGCTGCTAGTCGCATACCCTGAGTAACACCTGCCGCC < 41bp 0.725342770664924 0.336640881143868 0.24537417 0.05183947 prediction 0.450685541329849 Functional Loss - MTO1 ENSG00000135297 CDS Human protein_coding chr6:74210318 chr6:74210321 stopgain 0.997 1 24 hm5C_associated_SNPs_78137 0 0 1 0 1 MTO1 chr6:74210297 3'AG 74210297 Downstream 25bp
chr14 67787833 67787833 1 + C T SKCM 67787831 + 67787811 67787851 41 TAGAGATTACCACTTTGTTTCGCGGCAAGCATTCGAGGCAG TAGAGATTACCACTTTGTTTCGTGGCAAGCATTCGAGGCAG < 41bp 0.842358513112026 0.617019641599042 0.5554439 0.79110265 prediction 0.450677743025967 Functional Loss - MPP5 ENSG00000072415 CDS Human protein_coding chr14:67787831 chr14:67787833 nonsynonymous SNV 0.982 4 23 hm5C_associated_SNPs_78142 0 0 1 0 1 MPP5 chr14:67787774 3'AG 67787774 Downstream 60bp
chr1 4772739 4772739 1 + G A UCEC 4772736 + 4772716 4772756 41 CGGGGAAGTCACCCAGCCCCCAAGGATTCTGGGGGAGGCCT CGGGGAAGTCACCCAGCCCCCAAAGATTCTGGGGGAGGCCT < 41bp 0.72533699793064 0.474091196179094 0.43188304 0.13957852 prediction 0.450673995861279 Functional Loss - AJAP1 ENSG00000196581 CDS Human protein_coding chr1:4772736 chr1:4772739 nonsynonymous SNV 0.935 1 24 hm5C_associated_SNPs_78144 0 0 0 0 1 AJAP1 chr1:4772759 5'GT 4772759 Upstream 21bp
chr18 55309282 55309282 1 + A C rs188725508 55309281 + 55309261 55309301 41 AGAATGAAGCTGCGCACCCTCACGGTGAGTGTTACAGTTCT AGAATGAAGCTGCGCACCCTCCCGGTGAGTGTTACAGTTCT < 41bp 0.776654261063097 0.55132168834411 0.29913062 0.26318246 prediction 0.450665145437974 Functional Loss - LOC100505549 ENSG00000267040;ENSG00000267787 ncRNA_exonic Human other chr18:55309281 chr18:55309282 . . 0 22 hm5C_associated_SNPs_78147 0 0 0 0 1 LOC100505549 chr18:55309284 5'GT 55309284 Upstream 3bp
chr1 210411426 210411426 1 + G A rs142929495 210411423 + 210411403 210411443 41 GCTACGGAGGCCCAAGCCCCCCAGGGCCAGCACAAGCTCCT GCTACGGAGGCCCAAGCCCCCCAAGGCCAGCACAAGCTCCT < 41bp 0.769307783151595 0.543976329229142 0.25825468 0.10567358 prediction 0.450662907844906 Functional Loss - SERTAD4 ENSG00000082497 CDS Human protein_coding chr1:210411423 chr1:210411426 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_78148 0 0 0 0 1 SERTAD4 chr1:210411480 5'GT 210411480 Upstream 55bp
chr11 2608862 2608862 1 + G A SKCM 2608859 + 2608839 2608879 41 TCCACCTGGAAGATCTACATCCGGAAGGCCCCCCGGAGCCA TCCACCTGGAAGATCTACATCCGAAAGGCCCCCCGGAGCCA < 41bp 0.725328022139054 0.474674117248594 0.89642763 0.7125472 prediction 0.450656044278108 Functional Loss - KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2608859 chr11:2608862 synonymous SNV . 0 24 hm5C_associated_SNPs_78150 0 0 0 0 2 KCNQ1 chr11:2608800 3'AG 2608800 Downstream 63bp
chr11 2608862 2608862 1 + G A SKCM 2608859 + 2608839 2608879 41 TCCACCTGGAAGATCTACATCCGGAAGGCCCCCCGGAGCCA TCCACCTGGAAGATCTACATCCGAAAGGCCCCCCGGAGCCA < 41bp 0.725328022139054 0.474674117248594 0.89642763 0.7125472 prediction 0.450656044278108 Functional Loss - KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2608859 chr11:2608862 synonymous SNV . 0 24 hm5C_associated_SNPs_78150 0 0 0 0 2 KCNQ1 chr11:2608922 5'GT 2608922 Upstream 61bp
chr2 102836361 102836361 1 + A C KIRP 102836357 + 102836337 102836377 41 ATAGAACCCATGTCTCTTTTCGGGAACATAATTTGTACACA ATAGAACCCATGTCTCTTTTCGGGCACATAATTTGTACACA < 41bp 0.725327419641199 0.330008757801341 0.84291077 0.6320718 prediction 0.450654839282399 Functional Loss - IL1RL2 ENSG00000115598 CDS Human protein_coding chr2:102836357 chr2:102836361 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_78151 0 0 0 0 1 IL1RL2 chr2:102836341 3'AG 102836341 Downstream 21bp
chr16 54145685 54145685 1 + G A UCEC 54145682 + 54145662 54145702 41 TTACTCTTCCAGGTGCCAGTCACGAATTGCCCGAACATTAC TTACTCTTCCAGGTGCCAGTCACAAATTGCCCGAACATTAC < 41bp 0.727469296671096 0.502142272507082 0.036019385 0.036549896 prediction 0.450654048328027 Functional Loss - FTO ENSG00000140718 CDS Human protein_coding chr16:54145682 chr16:54145685 nonsynonymous SNV 0.871 0 24 hm5C_associated_SNPs_78152 0 0 0 1 1 FTO chr16:54145674 3'AG 54145674 Downstream 12bp
chr6 31947235 31947235 1 + G T READ 31947233 + 31947213 31947253 41 GACCGTATGCTGGGGCAGTGCAGAAATTTCTAGCTTCAGTA GACCGTATGCTGGGGCAGTGCATAAATTTCTAGCTTCAGTA < 41bp 0.725325861801516 0.452190028718315 0.2656507 0.22131637 prediction 0.450651723603031 Functional Loss - STK19 ENSG00000204344 CDS Human protein_coding chr6:31947233 chr6:31947235 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_78154 0 0 1 1 2 STK19 chr6:31947191 3'AG 31947191 Downstream 45bp
chr6 31947235 31947235 1 + G T READ 31947233 + 31947213 31947253 41 GACCGTATGCTGGGGCAGTGCAGAAATTTCTAGCTTCAGTA GACCGTATGCTGGGGCAGTGCATAAATTTCTAGCTTCAGTA < 41bp 0.725325861801516 0.452190028718315 0.2656507 0.22131637 prediction 0.450651723603031 Functional Loss - STK19 ENSG00000204344 CDS Human protein_coding chr6:31947233 chr6:31947235 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_78154 0 0 1 1 2 STK19 chr6:31947330 5'GT 31947330 Upstream 96bp
chr3 122432362 122432362 1 + G A SKCM 122432359 + 122432339 122432379 41 CAGGTGGCTTCTGGAGATATCACGAAAGAAGAGGCAGATGT CAGGTGGCTTCTGGAGATATCACAAAAGAAGAGGCAGATGT < 41bp 0.731052532478443 0.505728147146549 0.2142849 0.16846728 prediction 0.450648770663788 Functional Loss - PARP14 ENSG00000173193 CDS Human protein_coding chr3:122432359 chr3:122432362 synonymous SNV . 0 24 hm5C_associated_SNPs_78155 0 0 1 0 2 PARP14 chr3:122432271 3'AG 122432271 Downstream 92bp
chr3 122432362 122432362 1 + G A SKCM 122432359 + 122432339 122432379 41 CAGGTGGCTTCTGGAGATATCACGAAAGAAGAGGCAGATGT CAGGTGGCTTCTGGAGATATCACAAAAGAAGAGGCAGATGT < 41bp 0.731052532478443 0.505728147146549 0.2142849 0.16846728 prediction 0.450648770663788 Functional Loss - PARP14 ENSG00000173193 CDS Human protein_coding chr3:122432359 chr3:122432362 synonymous SNV . 0 24 hm5C_associated_SNPs_78155 0 0 1 0 2 PARP14 chr3:122432420 5'GT 122432420 Upstream 59bp
chr10 105048215 105048215 1 + G A CESC 105048212 + 105048192 105048232 41 TCCAAGTTACCTGCTCCCACCTAGAATCCTCAGTGCTACAA TCCAAGTTACCTGCTCCCACCTAAAATCCTCAGTGCTACAA < 41bp 0.760557580386605 0.5352335334239 0.16400269 0.13413993 prediction 0.450648093925411 Functional Loss - INA ENSG00000148798 CDS Human protein_coding chr10:105048212 chr10:105048215 nonsynonymous SNV 0.946 2 24 hm5C_associated_SNPs_78156 0 0 0 0 1 INA chr10:105048117 3'AG 105048117 Downstream 99bp
chr20 36031656 36031656 1 + C T LUAD 36031654 + 36031634 36031674 41 CGGAGTGTCCCGAGTCCCTGCACGACCTCATGTGCCAGTGC CGGAGTGTCCCGAGTCCCTGCATGACCTCATGTGCCAGTGC < 41bp 0.813919059026687 0.588602024990029 0.09076381 0.19980803 prediction 0.450634068073317 Functional Loss - SRC ENSG00000197122 CDS Human protein_coding chr20:36031654 chr20:36031656 synonymous SNV . 0 23 hm5C_associated_SNPs_78158 0 0 1 0 1 SRC chr20:36031574 3'AG 36031574 Downstream 83bp
chr17 12639553 12639553 1 + C T SKCM 12639550 + 12639530 12639570 41 CAGCAGCAGCGATGGGCTTTCTCCGGATCAGACTCGAAGTG CAGCAGCAGCGATGGGCTTTCTCTGGATCAGACTCGAAGTG < 41bp 0.731699108086863 0.5063826948944 0.34239006 0.22182414 prediction 0.450632826384927 Functional Loss - MYOCD ENSG00000141052;ENSG00000273452 CDS Human other chr17:12639550 chr17:12639553 nonsynonymous SNV 0.949 4 24 hm5C_associated_SNPs_78159 0 0 0 0 1 MYOCD chr17:12639478 3'AG 12639478 Downstream 76bp
chr1 1114645 1114645 1 + G A ESCA 1114642 + 1114622 1114662 41 CCACCGCCGGGGACCACCCACTCGGACCCGAGCCGGCTTCA CCACCGCCGGGGACCACCCACTCAGACCCGAGCCGGCTTCA < 41bp 0.799644016346145 0.574328127851901 0.22770825 0.123206824 prediction 0.450631776988488 Functional Loss - TTLL10 ENSG00000162571 CDS Human antisense chr1:1114642 chr1:1114645 nonsynonymous SNV 0.096 1 24 hm5C_associated_SNPs_78160 0 0 0 0 2 TTLL10 chr1:1114569 3'AG 1114569 Downstream 77bp
chr1 1114645 1114645 1 + G A ESCA 1114642 + 1114622 1114662 41 CCACCGCCGGGGACCACCCACTCGGACCCGAGCCGGCTTCA CCACCGCCGGGGACCACCCACTCAGACCCGAGCCGGCTTCA < 41bp 0.799644016346145 0.574328127851901 0.22770825 0.123206824 prediction 0.450631776988488 Functional Loss - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1114642 chr1:1114645 nonsynonymous SNV 0.096 1 24 hm5C_associated_SNPs_78160 0 0 0 0 2 TTLL10 chr1:1114713 5'GT 1114713 Upstream 69bp
chr3 148714590 148714590 1 + G C LUSC 148714586 + 148714566 148714606 41 AATTGTCAGCAGCACCAGACCCAGGGTGGCCTGACTGCTTC AATTGTCAGCAGCACCAGACCCAGCGTGGCCTGACTGCTTC < 41bp 0.725313808665842 0.433840371176278 0.8087454 0.36639926 prediction 0.450627617331683 Functional Loss - GYG1 ENSG00000163754 CDS Human protein_coding chr3:148714586 chr3:148714590 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_78162 0 0 1 0 2 GYG1 chr3:148714529 3'AG 148714529 Downstream 62bp
chr3 148714590 148714590 1 + G C LUSC 148714586 + 148714566 148714606 41 AATTGTCAGCAGCACCAGACCCAGGGTGGCCTGACTGCTTC AATTGTCAGCAGCACCAGACCCAGCGTGGCCTGACTGCTTC < 41bp 0.725313808665842 0.433840371176278 0.8087454 0.36639926 prediction 0.450627617331683 Functional Loss - GYG1 ENSG00000163754 CDS Human protein_coding chr3:148714586 chr3:148714590 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_78162 0 0 1 0 2 GYG1 chr3:148714679 5'GT 148714679 Upstream 90bp
chr1 70489004 70489004 1 + C T LUAD 70489002 + 70488982 70489022 41 GCAGGAAAGGAGCATGTGTACTCCATTGCCAGTTGCAGCAC GCAGGAAAGGAGCATGTGTACTTCATTGCCAGTTGCAGCAC < 41bp 0.847788901055869 0.622475440666754 0.9390509 0.11481401 prediction 0.45062692077823 Functional Loss - LRRC7 ENSG00000033122 CDS Human protein_coding chr1:70489002 chr1:70489004 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_78163 0 0 0 0 1 LRRC7 chr1:70489057 5'GT 70489057 Upstream 54bp
chr12 88440676 88440676 1 + G A rs9262 88440673 + 88440653 88440693 41 CTTCATTGAAGCACAATGATCTCGTGTCCTGGTTTGAAGAT CTTCATTGAAGCACAATGATCTCATGTCCTGGTTTGAAGAT < 41bp 0.726616411576938 0.501305726074432 0.032059968 0.0220941 prediction 0.450621371005013 Functional Loss - C12orf29 ENSG00000133641 CDS Human protein_coding chr12:88440673 chr12:88440676 nonsynonymous SNV 0.975 0 24 hm5C_associated_SNPs_78164 0 0 1 0 1 C12orf29 chr12:88440753 5'GT 88440753 Upstream 78bp
chr2 187370550 187370550 1 + G T UCEC 187370548 + 187370528 187370568 41 CAGATGATACCCGCTACACCCAGGGAACAGGTGGTGATGAG CAGATGATACCCGCTACACCCATGGAACAGGTGGTGATGAG < 41bp 0.901177393936586 0.675869070546025 0.9117116 0.79649764 prediction 0.450616646781121 Functional Loss - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187370548 chr2:187370550 nonsynonymous SNV 0.985 0 23 hm5C_associated_SNPs_78166 0 0 1 0 2 ZC3H15 chr2:187370467 3'AG 187370467 Downstream 84bp
chr2 187370550 187370550 1 + G T UCEC 187370548 + 187370528 187370568 41 CAGATGATACCCGCTACACCCAGGGAACAGGTGGTGATGAG CAGATGATACCCGCTACACCCATGGAACAGGTGGTGATGAG < 41bp 0.901177393936586 0.675869070546025 0.9117116 0.79649764 prediction 0.450616646781121 Functional Loss - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187370548 chr2:187370550 nonsynonymous SNV 0.985 0 23 hm5C_associated_SNPs_78166 0 0 1 0 2 ZC3H15 chr2:187370568 5'GT 187370568 Upstream 19bp
chr17 34964140 34964140 1 + C T UCEC 34964138 + 34964118 34964158 41 CAGGGCTGGCTCGTGGCCGGCACGGTGGGCTGCCCAAGCAC CAGGGCTGGCTCGTGGCCGGCATGGTGGGCTGCCCAAGCAC < 41bp 0.821082196776491 0.595781385349598 0.88698035 0.8903717 prediction 0.450601622853785 Functional Loss - MRM1 ENSG00000129282 CDS Human other chr17:34964138 chr17:34964140 nonsynonymous SNV 0.651 3 23 hm5C_associated_SNPs_78169 0 0 1 0 2 MRM1 chr17:34964106 3'AG 34964106 Downstream 35bp
chr17 34964140 34964140 1 + C T UCEC 34964138 + 34964118 34964158 41 CAGGGCTGGCTCGTGGCCGGCACGGTGGGCTGCCCAAGCAC CAGGGCTGGCTCGTGGCCGGCATGGTGGGCTGCCCAAGCAC < 41bp 0.821082196776491 0.595781385349598 0.88698035 0.8903717 prediction 0.450601622853785 Functional Loss - MRM1 ENSG00000129282 CDS Human other chr17:34964138 chr17:34964140 nonsynonymous SNV 0.651 3 23 hm5C_associated_SNPs_78169 0 0 1 0 2 MRM1 chr17:34964238 5'GT 34964238 Upstream 99bp
chr11 134131669 134131669 1 + T C UCEC 134131668 + 134131648 134131688 41 TGGCTGATATGGCAACAAGGCTGGTGGCCGCGCGGCTGATG TGGCTGATATGGCAACAAGGCCGGTGGCCGCGCGGCTGATG < 41bp 0.774019328178535 0.548730595666802 0.50704557 0.6721325 prediction 0.450577465023465 Functional Loss - ACAD8 ENSG00000151498 CDS Human protein_coding chr11:134131668 chr11:134131669 nonsynonymous SNV 0.994 5 22 hm5C_associated_SNPs_78172 0 0 1 0 1 ACAD8 chr11:134131632 3'AG 134131632 Downstream 38bp
chr19 2807451 2807451 1 + C T LUSC 2807449 + 2807429 2807469 41 CCTCCCCGCAGATGAGCTGGCGCAGAAGCTGAAGCCCCTGG CCTCCCCGCAGATGAGCTGGCGTAGAAGCTGAAGCCCCTGG < 41bp 0.72528244137101 0.478065141713076 0.33970514 0.24995542 prediction 0.450564882742021 Functional Loss - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2807449 chr19:2807451 stopgain 0.952 0 23 hm5C_associated_SNPs_78176 0 0 1 0 1 THOP1 chr19:2807440 3'AG 2807440 Downstream 12bp
chr4 134084149 134084149 1 + A T COAD 134084145 + 134084125 134084165 41 CTTACAGGTATGGATCTCTTCTCCAATTGCACTGAGGAATG CTTACAGGTATGGATCTCTTCTCCTATTGCACTGAGGAATG < 41bp 0.725281076549112 0.368078408724085 0.95710874 0.085927516 prediction 0.450562153098224 Functional Loss - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134084145 chr4:134084149 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_78178 0 0 0 0 1 PCDH10 chr4:134084132 3'AG 134084132 Downstream 18bp
chr4 134084147 134084147 1 + C T SKCM 134084145 + 134084125 134084165 41 CTTACAGGTATGGATCTCTTCTCCAATTGCACTGAGGAATG CTTACAGGTATGGATCTCTTCTTCAATTGCACTGAGGAATG < 41bp 0.725281076549112 0.416607894503548 0.95710874 0.13709447 prediction 0.450562153098224 Functional Loss - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134084145 chr4:134084147 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_78179 0 0 0 0 1 PCDH10 chr4:134084132 3'AG 134084132 Downstream 16bp
chr16 230808 230808 1 + C T rs184435680 230806 + 230786 230826 41 CGCCTGGACGACCTACCCCACGCGCTGTCCGCGCTGAGCCA CGCCTGGACGACCTACCCCACGTGCTGTCCGCGCTGAGCCA < 41bp 0.737207659253829 0.511930130754116 0.060433894 0.18284121 prediction 0.450555056999426 Functional Loss - HBQ1 ENSG00000086506 CDS Human protein_coding chr16:230806 chr16:230808 nonsynonymous SNV 0.003 3 23 hm5C_associated_SNPs_78183 0 0 0 0 1 HBQ1 chr16:230869 5'GT 230869 Upstream 62bp
chr17 45421618 45421618 1 + A C SKCM 45421617 + 45421597 45421637 41 CCGAATCAGTACAGCGTTCACAAGACTTCATCACCTCTTTG CCGAATCAGTACAGCGTTCACCAGACTTCATCACCTCTTTG < 41bp 0.725274424781327 0.462318254396749 0.18786079 0.40331072 prediction 0.450548849562654 Functional Loss - EFCAB13 ENSG00000178852 CDS Human protein_coding chr17:45421617 chr17:45421618 nonsynonymous SNV 0.112 2 22 hm5C_associated_SNPs_78186 0 0 0 0 1 EFCAB13 chr17:45421528 3'AG 45421528 Downstream 91bp
chr3 63975956 63975956 1 + G A UCEC 63975953 + 63975933 63975973 41 GCCTGCCACTGAGCCAGCTTCTCGGTTATCCAGTGAGGAGG GCCTGCCACTGAGCCAGCTTCTCAGTTATCCAGTGAGGAGG < 41bp 0.787591040845361 0.562318169581105 0.31206262 0.32225198 prediction 0.450545742528513 Functional Loss - ATXN7 ENSG00000163635 CDS Human protein_coding chr3:63975953 chr3:63975956 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_78187 0 0 0 0 1 ATXN7 chr3:63976050 5'GT 63976050 Upstream 95bp
chr19 15219962 15219962 1 + G A CESC 15219959 + 15219939 15219979 41 GAGCAGAGGGGCCCTCCAGCCCCGAGGCATCAAGGAGCCCT GAGCAGAGGGGCCCTCCAGCCCCAAGGCATCAAGGAGCCCT < 41bp 0.753649314476948 0.528379115592596 0.6266151 0.4378799 prediction 0.450540397768703 Functional Loss - SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15219959 chr19:15219962 nonsynonymous SNV 0.027 0 24 hm5C_associated_SNPs_78189 0 0 0 0 1 SYDE1 chr19:15219867 3'AG 15219867 Downstream 96bp
chr9 36657333 36657333 1 + A C TGCT 36657329 + 36657309 36657349 41 TTGGTGTGAAGATGATTTATCAACAGGTGCTGCTACTCCCC TTGGTGTGAAGATGATTTATCAACCGGTGCTGCTACTCCCC < 41bp 0.725269056954146 0.323298935583555 0.2665534 0.25610793 prediction 0.450538113908292 Functional Loss - MELK ENSG00000165304 CDS Human protein_coding chr9:36657329 chr9:36657333 synonymous SNV . 0 25 hm5C_associated_SNPs_78190 0 0 1 0 2 MELK chr9:36657238 3'AG 36657238 Downstream 96bp
chr9 36657333 36657333 1 + A C TGCT 36657329 + 36657309 36657349 41 TTGGTGTGAAGATGATTTATCAACAGGTGCTGCTACTCCCC TTGGTGTGAAGATGATTTATCAACCGGTGCTGCTACTCCCC < 41bp 0.725269056954146 0.323298935583555 0.2665534 0.25610793 prediction 0.450538113908292 Functional Loss - MELK ENSG00000165304 CDS Human protein_coding chr9:36657329 chr9:36657333 synonymous SNV . 0 25 hm5C_associated_SNPs_78190 0 0 1 0 2 MELK chr9:36657360 5'GT 36657360 Upstream 28bp
chr20 4680430 4680430 1 + G A STAD 4680427 + 4680407 4680447 41 AATATCACAATCAAGCAGCACACGGTCACCACAACCACCAA AATATCACAATCAAGCAGCACACAGTCACCACAACCACCAA < 41bp 0.758221022076535 0.532952080847708 0.11959094 0.06884125 prediction 0.450537882457654 Functional Loss - PRNP ENSG00000171867 CDS Human protein_coding chr20:4680427 chr20:4680430 synonymous SNV . 0 24 hm5C_associated_SNPs_78192 0 0 1 0 1 PRNP chr20:4680516 5'GT 4680516 Upstream 87bp
chr15 85486730 85486730 1 + T C rs45584739 85486729 + 85486709 85486749 41 TGTGGATTTGCCAATTTCAGCTCCATTGGGATCATGCTGGG TGTGGATTTGCCAATTTCAGCCCCATTGGGATCATGCTGGG < 41bp 0.725268938455634 0.454114907702032 0.40844828 0.07475436 prediction 0.450537876911268 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85486729 chr15:85486730 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_78193 0 0 0 0 2 SLC28A1 chr15:85486676 3'AG 85486676 Downstream 55bp
chr15 85486730 85486730 1 + T C rs45584739 85486729 + 85486709 85486749 41 TGTGGATTTGCCAATTTCAGCTCCATTGGGATCATGCTGGG TGTGGATTTGCCAATTTCAGCCCCATTGGGATCATGCTGGG < 41bp 0.725268938455634 0.454114907702032 0.40844828 0.07475436 prediction 0.450537876911268 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85486729 chr15:85486730 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_78193 0 0 0 0 2 SLC28A1 chr15:85486757 5'GT 85486757 Upstream 28bp
chr19 2811728 2811728 1 + G T LUSC 2811726 + 2811706 2811746 41 AAGCAGGAGGGTGTCCTGAACAGCAAGGTACGCGGGGACTG AAGCAGGAGGGTGTCCTGAACATCAAGGTACGCGGGGACTG < 41bp 0.897711414318901 0.672444934671454 0.41638398 0.16829002 prediction 0.450532959294895 Functional Loss - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2811726 chr19:2811728 nonsynonymous SNV 0.676 1 23 hm5C_associated_SNPs_78194 0 0 0 0 1 THOP1 chr19:2811732 5'GT 2811732 Upstream 5bp
chr1 236343283 236343283 1 + G T SARC 236343280 + 236343260 236343300 41 ATCCTGTCATTTTCTCAGAACAAGAGCGTCCATTCCTTTGA ATCCTGTCATTTTCTCAGAACAATAGCGTCCATTCCTTTGA < 41bp 0.725266203723969 0.332886377307975 0.15200853 0.045139104 prediction 0.450532407447938 Functional Loss - GPR137B ENSG00000077585 CDS Human protein_coding chr1:236343280 chr1:236343283 nonsynonymous SNV 0.801 0 24 hm5C_associated_SNPs_78195 0 0 1 0 1 GPR137B chr1:236343328 5'GT 236343328 Upstream 46bp
chr5 137754711 137754711 1 + C T rs114783842 137754709 + 137754689 137754729 41 CTCTGGTGGAGGAGGACCGGCACCAGTAACAACTCCAGAGC CTCTGGTGGAGGAGGACCGGCATCAGTAACAACTCCAGAGC < 41bp 0.725260302099187 0.428234323636839 0.28058642 0.23393467 prediction 0.450520604198375 Functional Loss - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137754709 chr5:137754711 nonsynonymous SNV 0.174 0 23 hm5C_associated_SNPs_78198 0 0 1 0 1 KDM3B chr5:137754642 3'AG 137754642 Downstream 70bp
chr2 242757425 242757425 1 + C T CESC 242757423 + 242757403 242757443 41 GGCCACGGCGTGCAGCTGCCCTCAGGCCGCCTGCTGGTACC GGCCACGGCGTGCAGCTGCCCTTAGGCCGCCTGCTGGTACC < 41bp 0.725258255495132 0.472619282420643 0.11920014 0.1879912 prediction 0.450516510990264 Functional Loss - NEU4 ENSG00000204099 CDS Human protein_coding chr2:242757423 chr2:242757425 stopgain 0.726 5 23 hm5C_associated_SNPs_78199 0 0 0 0 1 NEU4 chr2:242757377 3'AG 242757377 Downstream 49bp
chr17 41576268 41576268 1 + C T SKCM 41576266 + 41576246 41576286 41 TGAATTGGTTGAGGAAGAGCCTCCATTCCTGAGAGGGCACA TGAATTGGTTGAGGAAGAGCCTTCATTCCTGAGAGGGCACA < 41bp 0.725247860880244 0.40936624366574 0.9588223 0.31218517 prediction 0.450495721760488 Functional Loss - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41576266 chr17:41576268 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_78204 0 0 1 0 2 DHX8 chr17:41576230 3'AG 41576230 Downstream 39bp
chr17 41576268 41576268 1 + C T SKCM 41576266 + 41576246 41576286 41 TGAATTGGTTGAGGAAGAGCCTCCATTCCTGAGAGGGCACA TGAATTGGTTGAGGAAGAGCCTTCATTCCTGAGAGGGCACA < 41bp 0.725247860880244 0.40936624366574 0.9588223 0.31218517 prediction 0.450495721760488 Functional Loss - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41576266 chr17:41576268 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_78204 0 0 1 0 2 DHX8 chr17:41576327 5'GT 41576327 Upstream 60bp
chr17 6927466 6927466 1 + G A UCEC 6927463 + 6927443 6927483 41 GGGTGGACGTGCTCTCTCTGCCCGGGGGTCCCGAAGCGAGA GGGTGGACGTGCTCTCTCTGCCCAGGGGTCCCGAAGCGAGA < 41bp 0.725246613416234 0.469629090152828 0.40246353 0.05980274 prediction 0.450493226832468 Functional Loss - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6927463 chr17:6927466 nonsynonymous SNV 0.686 0 24 hm5C_associated_SNPs_78205 0 0 0 0 1 BCL6B chr17:6927402 3'AG 6927402 Downstream 65bp
chr12 8628784 8628784 1 + G T SKCM 8628781 + 8628761 8628801 41 TTCTGGGGCTTTCAGACCCACAAGGTAATAATAATTGGCAA TTCTGGGGCTTTCAGACCCACAATGTAATAATAATTGGCAA < 41bp 0.7252457127772 0.341619630091305 0.9144007 0.3857777 prediction 0.4504914255544 Functional Loss - CLEC6A ENSG00000205846 CDS Human protein_coding chr12:8628781 chr12:8628784 nonsynonymous SNV 0.957 3 24 hm5C_associated_SNPs_78206 0 0 0 0 2 CLEC6A chr12:8628721 3'AG 8628721 Downstream 64bp
chr12 8628784 8628784 1 + G T SKCM 8628781 + 8628761 8628801 41 TTCTGGGGCTTTCAGACCCACAAGGTAATAATAATTGGCAA TTCTGGGGCTTTCAGACCCACAATGTAATAATAATTGGCAA < 41bp 0.7252457127772 0.341619630091305 0.9144007 0.3857777 prediction 0.4504914255544 Functional Loss - CLEC6A ENSG00000205846 CDS Human protein_coding chr12:8628781 chr12:8628784 nonsynonymous SNV 0.957 3 24 hm5C_associated_SNPs_78206 0 0 0 0 2 CLEC6A chr12:8628836 5'GT 8628836 Upstream 53bp
chr7 105658359 105658359 1 + C T LUSC 105658356 + 105658336 105658376 41 CCCCAGAGCAGCCTCCTGTACTCCATCTCCACTGGAGGGGC CCCCAGAGCAGCCTCCTGTACTCTATCTCCACTGGAGGGGC < 41bp 0.725245553385478 0.493754081449151 0.8927419 0.1464147 prediction 0.450491106770957 Functional Loss - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105658356 chr7:105658359 synonymous SNV . 0 24 hm5C_associated_SNPs_78207 0 0 0 0 1 CDHR3 chr7:105658292 3'AG 105658292 Downstream 68bp
chr16 67233243 67233243 1 + G A rs75193761 67233240 + 67233220 67233260 41 CAGCTGGACCATGGCGCCTCCGCGGAACGTGGTGAAGATTG CAGCTGGACCATGGCGCCTCCGCAGAACGTGGTGAAGATTG < 41bp 0.77596045779442 0.550715783699186 0.53112644 0.13270679 prediction 0.450489348190468 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67233240 chr16:67233243 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_78208 0 0 0 0 1 ELMO3 chr16:67233307 5'GT 67233307 Upstream 65bp
chr18 43204725 43204725 1 + G A SKCM 43204722 + 43204702 43204742 41 TTTACCAGCCCGAGCTGGCCCTCGACATCCCCGGATACTCA TTTACCAGCCCGAGCTGGCCCTCAACATCCCCGGATACTCA < 41bp 0.760249789464012 0.535006420786 0.5347226 0.14914346 prediction 0.450486737356023 Functional Loss - SLC14A2 ENSG00000132874 CDS Human protein_coding chr18:43204722 chr18:43204725 synonymous SNV . 0 24 hm5C_associated_SNPs_78209 0 0 0 0 1 SLC14A2 chr18:43204779 5'GT 43204779 Upstream 55bp
chr14 50065825 50065825 1 + G A UCEC 50065822 + 50065802 50065842 41 CGGGGCAAGGGCGTCCGAGCCGTGTTGAGCCTCTGTCAGCA CGGGGCAAGGGCGTCCGAGCCGTATTGAGCCTCTGTCAGCA < 41bp 0.778753839169846 0.553512353975581 0.30111367 0.29710037 prediction 0.450482970388529 Functional Loss - LRR1 ENSG00000165501 CDS Human protein_coding chr14:50065822 chr14:50065825 synonymous SNV . 0 24 hm5C_associated_SNPs_78211 0 0 1 0 1 LRR1 chr14:50065921 5'GT 50065921 Upstream 97bp
chr1 111999270 111999270 1 + G A CESC 111999267 + 111999247 111999287 41 TGTAGCAAAAACTTGCCCAACTAGAAGAGGCGAAGCAGGCT TGTAGCAAAAACTTGCCCAACTAAAAGAGGCGAAGCAGGCT < 41bp 0.750351217266365 0.525110369017305 0.1846818 0.39711466 prediction 0.45048169649812 Functional Loss - ATP5F1 ENSG00000116459 CDS Human protein_coding chr1:111999267 chr1:111999270 nonsynonymous SNV 0.975 1 24 hm5C_associated_SNPs_78212 0 0 1 2 1 ATP5F1 chr1:111999252 3'AG 111999252 Downstream 19bp
chrX 2700157 2700157 1 + G A rs5939319 2700154 + 2700134 2700174 41 ACTACCCACAGCCCGAGAATCCCGACAGCGGTGGAAGTAAG ACTACCCACAGCCCGAGAATCCCAACAGCGGTGGAAGTAAG < 41bp 0.747536732523082 0.522310037708868 0.10909611 0.07947904 prediction 0.450453389628427 Functional Loss - XG ENSG00000124343 CDS Human protein_coding chrX:2700154 chrX:2700157 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_78214 0 0 0 0 2 XG chrX:2700107 3'AG 2700107 Downstream 51bp
chrX 2700157 2700157 1 + G A rs5939319 2700154 + 2700134 2700174 41 ACTACCCACAGCCCGAGAATCCCGACAGCGGTGGAAGTAAG ACTACCCACAGCCCGAGAATCCCAACAGCGGTGGAAGTAAG < 41bp 0.747536732523082 0.522310037708868 0.10909611 0.07947904 prediction 0.450453389628427 Functional Loss - XG ENSG00000124343 CDS Human protein_coding chrX:2700154 chrX:2700157 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_78214 0 0 0 0 2 XG chrX:2700169 5'GT 2700169 Upstream 13bp
chr19 804112 804112 1 + G T PRAD 804110 + 804090 804130 41 CCTCTAGAGTGATCCACATCCGGAAGCTCCCCATCGACGTC CCTCTAGAGTGATCCACATCCGTAAGCTCCCCATCGACGTC < 41bp 0.909698241749332 0.684473119311108 0.8559562 0.115030795 prediction 0.450450244876448 Functional Loss - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804110 chr19:804112 synonymous SNV . 0 23 hm5C_associated_SNPs_78215 0 0 1 0 2 PTBP1 chr19:804036 3'AG 804036 Downstream 77bp
chr19 804112 804112 1 + G T PRAD 804110 + 804090 804130 41 CCTCTAGAGTGATCCACATCCGGAAGCTCCCCATCGACGTC CCTCTAGAGTGATCCACATCCGTAAGCTCCCCATCGACGTC < 41bp 0.909698241749332 0.684473119311108 0.8559562 0.115030795 prediction 0.450450244876448 Functional Loss - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804110 chr19:804112 synonymous SNV . 0 23 hm5C_associated_SNPs_78215 0 0 1 0 2 PTBP1 chr19:804208 5'GT 804208 Upstream 97bp
chr22 30823345 30823345 1 + C T STAD 30823343 + 30823323 30823363 41 GTCCGCAAGTGGACCACCACCGCGCTTGGGCTGTTGACCAT GTCCGCAAGTGGACCACCACCGTGCTTGGGCTGTTGACCAT < 41bp 0.824987009062861 0.599764954014271 0.30178988 0.29746228 prediction 0.450444110097181 Functional Loss - MTFP1 ENSG00000242114;ENSG00000249590 CDS Human other chr22:30823343 chr22:30823345 nonsynonymous SNV 0.017 0 23 hm5C_associated_SNPs_78216 0 0 1 0 1 MTFP1 chr22:30823390 5'GT 30823390 Upstream 46bp
chr1 47279237 47279237 1 + G A SKCM 47279234 + 47279214 47279254 41 CACATGGCGCTGAACACACTCATGAAGTGCACCTTTGGAAG CACATGGCGCTGAACACACTCATAAAGTGCACCTTTGGAAG < 41bp 0.772072946687851 0.546852328482906 0.22688836 0.13026565 prediction 0.45044123640989 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47279234 chr1:47279237 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_78217 0 0 0 0 2 CYP4B1 chr1:47279154 3'AG 47279154 Downstream 84bp
chr1 47279237 47279237 1 + G A SKCM 47279234 + 47279214 47279254 41 CACATGGCGCTGAACACACTCATGAAGTGCACCTTTGGAAG CACATGGCGCTGAACACACTCATAAAGTGCACCTTTGGAAG < 41bp 0.772072946687851 0.546852328482906 0.22688836 0.13026565 prediction 0.45044123640989 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47279234 chr1:47279237 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_78217 0 0 0 0 2 CYP4B1 chr1:47279278 5'GT 47279278 Upstream 42bp
chr7 5257579 5257579 1 + C T OV 5257577 + 5257557 5257597 41 CTGCAAACATGATTCCGGCTCACGACAGTCCTTTAGCGGCA CTGCAAACATGATTCCGGCTCATGACAGTCCTTTAGCGGCA < 41bp 0.725218116482948 0.431734396219962 0.26477814 0.25336766 prediction 0.450436232965896 Functional Loss - WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5257577 chr7:5257579 synonymous SNV . 0 23 hm5C_associated_SNPs_78220 0 0 1 0 2 WIPI2 chr7:5257553 3'AG 5257553 Downstream 27bp
chr7 5257579 5257579 1 + C T OV 5257577 + 5257557 5257597 41 CTGCAAACATGATTCCGGCTCACGACAGTCCTTTAGCGGCA CTGCAAACATGATTCCGGCTCATGACAGTCCTTTAGCGGCA < 41bp 0.725218116482948 0.431734396219962 0.26477814 0.25336766 prediction 0.450436232965896 Functional Loss - WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5257577 chr7:5257579 synonymous SNV . 0 23 hm5C_associated_SNPs_78220 0 0 1 0 2 WIPI2 chr7:5257645 5'GT 5257645 Upstream 67bp
chr11 1094679 1094679 1 + G A COAD 1094676 + 1094656 1094696 41 CTCTCACAGGCACCCCCACTCGCGGTACCACGACCGGGTCA CTCTCACAGGCACCCCCACTCGCAGTACCACGACCGGGTCA < 41bp 0.769371589374477 0.544154503511134 0.92102134 0.8326172 prediction 0.450434171726686 Functional Loss - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1094676 chr11:1094679 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_78221 0 0 0 0 1 MUC2 chr11:1094665 3'AG 1094665 Downstream 15bp
chr8 76456151 76456151 1 + G T SARC 76456149 + 76456129 76456169 41 GGAAAACACTATGGGGCATCCAGCTGTGATGGGTGCAAGGG GGAAAACACTATGGGGCATCCATCTGTGATGGGTGCAAGGG < 41bp 0.72521565903295 0.378772395477672 0.3642553 0.2528636 prediction 0.4504313180659 Functional Loss - HNF4G ENSG00000164749 CDS Human protein_coding chr8:76456149 chr8:76456151 nonsynonymous SNV 0.657 5 23 hm5C_associated_SNPs_78222 0 0 0 0 1 HNF4G chr8:76456214 5'GT 76456214 Upstream 64bp
chr8 26481823 26481823 1 + G A PRAD 26481820 + 26481800 26481840 41 TGGAAGCGCTTGTGAAGGATCACGGTAGGTTGCACTGAGTC TGGAAGCGCTTGTGAAGGATCACAGTAGGTTGCACTGAGTC < 41bp 0.791719761790071 0.566506438286567 0.72867185 0.49163732 prediction 0.450426647007008 Functional Loss - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26481820 chr8:26481823 nonsynonymous SNV 0.987 5 24 hm5C_associated_SNPs_78223 0 0 1 0 1 DPYSL2 chr8:26481823 5'GT 26481823 Upstream 1bp
chr3 133169222 133169222 1 + G A SKCM 133169219 + 133169199 133169239 41 ATGCTCCCATTGGCACTGGTCTGGACGACATCCTTGAGACG ATGCTCCCATTGGCACTGGTCTGAACGACATCCTTGAGACG < 41bp 0.79126282029166 0.566053896319189 0.50335675 0.17342111 prediction 0.450417847944941 Functional Loss - BFSP2 ENSG00000170819 CDS Human protein_coding chr3:133169219 chr3:133169222 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_78224 0 0 0 0 2 BFSP2 chr3:133169147 3'AG 133169147 Downstream 76bp
chr3 133169222 133169222 1 + G A SKCM 133169219 + 133169199 133169239 41 ATGCTCCCATTGGCACTGGTCTGGACGACATCCTTGAGACG ATGCTCCCATTGGCACTGGTCTGAACGACATCCTTGAGACG < 41bp 0.79126282029166 0.566053896319189 0.50335675 0.17342111 prediction 0.450417847944941 Functional Loss - BFSP2 ENSG00000170819 CDS Human protein_coding chr3:133169219 chr3:133169222 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_78224 0 0 0 0 2 BFSP2 chr3:133169308 5'GT 133169308 Upstream 87bp
chr2 130737955 130737955 1 - T A rs6741303 130737959 - 130737939 130737979 41 ATTTGTGATATCGTAAACTACTACAGCTGCAGCAGAATCAC ATTTGTGATATCGTAAACTACTACTGCTGCAGCAGAATCAC < 41bp 0.725205465400833 0.387176115770848 0.049975276 0.058666617 prediction 0.450410930801666 Functional Loss - RAB6C ENSG00000222014 CDS Human protein_coding chr2:130737959 chr2:130737955 synonymous SNV . 0 25 hm5C_associated_SNPs_78226 0 0 0 0 1 RAB6C chr2:130737857 5'GT 130737857 Upstream 99bp
chr19 9939519 9939519 1 + G A COAD 9939516 + 9939496 9939536 41 ATGTCTCTTTTTCTTAGGTACACGATTTTTAAGGACCACGT ATGTCTCTTTTTCTTAGGTACACAATTTTTAAGGACCACGT < 41bp 0.743151283163799 0.517951053625702 0.03748557 0.019422114 prediction 0.450400459076193 Functional Loss - UBL5 ENSG00000198258 CDS Human protein_coding chr19:9939516 chr19:9939519 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_78232 0 0 1 0 2 UBL5 chr19:9939513 3'AG 9939513 Downstream 7bp
chr19 9939519 9939519 1 + G A COAD 9939516 + 9939496 9939536 41 ATGTCTCTTTTTCTTAGGTACACGATTTTTAAGGACCACGT ATGTCTCTTTTTCTTAGGTACACAATTTTTAAGGACCACGT < 41bp 0.743151283163799 0.517951053625702 0.03748557 0.019422114 prediction 0.450400459076193 Functional Loss - UBL5 ENSG00000198258 CDS Human protein_coding chr19:9939516 chr19:9939519 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_78232 0 0 1 0 2 UBL5 chr19:9939550 5'GT 9939550 Upstream 32bp
chr15 45559942 45559942 1 + G A SKCM 45559939 + 45559919 45559959 41 CCTCATCAAAGCTAGCGTATCCGGAAGTGGAGGAGTCCAAG CCTCATCAAAGCTAGCGTATCCGAAAGTGGAGGAGTCCAAG < 41bp 0.772834449498046 0.54763439721575 0.7265831 0.18583101 prediction 0.450400104564592 Functional Loss - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45559939 chr15:45559942 nonsynonymous SNV 0.303 4 24 hm5C_associated_SNPs_78233 0 0 0 0 2 SLC28A2 chr15:45559864 3'AG 45559864 Downstream 79bp
chr15 45559942 45559942 1 + G A SKCM 45559939 + 45559919 45559959 41 CCTCATCAAAGCTAGCGTATCCGGAAGTGGAGGAGTCCAAG CCTCATCAAAGCTAGCGTATCCGAAAGTGGAGGAGTCCAAG < 41bp 0.772834449498046 0.54763439721575 0.7265831 0.18583101 prediction 0.450400104564592 Functional Loss - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45559939 chr15:45559942 nonsynonymous SNV 0.303 4 24 hm5C_associated_SNPs_78233 0 0 0 0 2 SLC28A2 chr15:45559994 5'GT 45559994 Upstream 53bp
chr22 35719503 35719503 1 + G A GBM 35719500 + 35719480 35719520 41 CCCTCTCAGTCCTGGGCTGACGCGTTCCGCAGCTCGCCCGA CCCTCTCAGTCCTGGGCTGACGCATTCCGCAGCTCGCCCGA < 41bp 0.771611635157094 0.546417350519749 0.17627198 0.13310444 prediction 0.45038856927469 Functional Loss - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35719500 chr22:35719503 synonymous SNV . 0 24 hm5C_associated_SNPs_78235 0 0 1 0 1 TOM1 chr22:35719489 3'AG 35719489 Downstream 15bp
chr11 63753935 63753935 1 + G T SARC 63753933 + 63753913 63753953 41 GCGGCGCTGTTTAAAGATGGCGGCGGAGGAACCTCAGCAGC GCGGCGCTGTTTAAAGATGGCGTCGGAGGAACCTCAGCAGC < 41bp 0.83178930318997 0.606595991162878 0.8701861 0.6632729 prediction 0.450386624054184 Functional Loss - OTUB1 ENSG00000167770;ENSG00000256100 CDS Human other chr11:63753933 chr11:63753935 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_78238 0 0 1 0 1 OTUB1 chr11:63753986 5'GT 63753986 Upstream 52bp
chr7 98957329 98957329 1 + G A LUSC 98957326 + 98957306 98957346 41 GCCACAACTGAGGACCGCAACACGGCCTTGGAGACGCTGCA GCCACAACTGAGGACCGCAACACAGCCTTGGAGACGCTGCA < 41bp 0.725189443938571 0.482819063416706 0.35002786 0.06284934 prediction 0.450378887877141 Functional Loss - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98957326 chr7:98957329 synonymous SNV . 0 24 hm5C_associated_SNPs_78240 0 0 1 0 1 ARPC1A chr7:98957361 5'GT 98957361 Upstream 33bp
chr7 98957328 98957328 1 + C T STAD 98957326 + 98957306 98957346 41 GCCACAACTGAGGACCGCAACACGGCCTTGGAGACGCTGCA GCCACAACTGAGGACCGCAACATGGCCTTGGAGACGCTGCA < 41bp 0.725189443938571 0.455346872278391 0.35002786 0.30930668 prediction 0.450378887877141 Functional Loss - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98957326 chr7:98957328 nonsynonymous SNV 0.992 3 23 hm5C_associated_SNPs_78241 0 0 1 0 1 ARPC1A chr7:98957361 5'GT 98957361 Upstream 34bp
chr7 134643009 134643009 1 + A C LUSC 134643008 + 134642988 134643028 41 GCAATAGTCTCCAAGATTGACAGCAGACTGGAGCAGTATAC GCAATAGTCTCCAAGATTGACCGCAGACTGGAGCAGTATAC < 41bp 0.725189259795353 0.480841752224386 0.41617343 0.18414313 prediction 0.450378519590707 Functional Loss - CALD1 ENSG00000122786 CDS Human protein_coding chr7:134643008 chr7:134643009 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_78242 0 0 1 0 3 CALD1 chr7:134642960 3'AG 134642960 Downstream 50bp
chr7 134643009 134643009 1 + A C LUSC 134643008 + 134642988 134643028 41 GCAATAGTCTCCAAGATTGACAGCAGACTGGAGCAGTATAC GCAATAGTCTCCAAGATTGACCGCAGACTGGAGCAGTATAC < 41bp 0.725189259795353 0.480841752224386 0.41617343 0.18414313 prediction 0.450378519590707 Functional Loss - CALD1 ENSG00000122786 CDS Human protein_coding chr7:134643008 chr7:134643009 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_78242 0 0 1 0 3 CALD1 chr7:134642963 3'AG 134642963 Downstream 47bp
chr7 134643009 134643009 1 + A C LUSC 134643008 + 134642988 134643028 41 GCAATAGTCTCCAAGATTGACAGCAGACTGGAGCAGTATAC GCAATAGTCTCCAAGATTGACCGCAGACTGGAGCAGTATAC < 41bp 0.725189259795353 0.480841752224386 0.41617343 0.18414313 prediction 0.450378519590707 Functional Loss - CALD1 ENSG00000122786 CDS Human protein_coding chr7:134643008 chr7:134643009 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_78242 0 0 1 0 3 CALD1 chr7:134643041 5'GT 134643041 Upstream 33bp
chr11 101786119 101786119 1 + G T LUAD 101786117 + 101786097 101786137 41 CTCGGCCCTCGGGAGAGCGGCGGGCATCACCGACCTGGCTC CTCGGCCCTCGGGAGAGCGGCGTGCATCACCGACCTGGCTC < 41bp 0.725187716010278 0.364642908184041 0.92298687 0.7412805 prediction 0.450375432020555 Functional Loss - CEP126 ENSG00000110318 CDS Human protein_coding chr11:101786117 chr11:101786119 nonsynonymous SNV 0.069 2 23 hm5C_associated_SNPs_78244 0 0 0 0 1 CEP126 chr11:101786143 5'GT 101786143 Upstream 25bp
chr1 67148017 67148017 1 + G A UCEC 67148014 + 67147994 67148034 41 CAGGACTGTGGTTTCGTCCCCCGGACCTGGCTCGGGCCCTG CAGGACTGTGGTTTCGTCCCCCGAACCTGGCTCGGGCCCTG < 41bp 0.763058082037266 0.537875906783173 0.78115773 0.5150342 prediction 0.450364350508186 Functional Loss - SGIP1 ENSG00000118473 CDS Human protein_coding chr1:67148014 chr1:67148017 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_78246 0 0 0 0 1 SGIP1 chr1:67148052 5'GT 67148052 Upstream 36bp
chr16 334498 334498 1 + C T BLCA 334496 + 334476 334516 41 CTGGCCAAGGTGGATGGGCCCGCGCAGCGCGAGCTGGCTGA CTGGCCAAGGTGGATGGGCCCGTGCAGCGCGAGCTGGCTGA < 41bp 0.801441501938203 0.576261414995787 0.28108644 0.38261086 prediction 0.450360173884832 Functional Loss - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:334496 chr16:334498 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_78247 0 0 0 0 1 PDIA2 chr16:334593 5'GT 334593 Upstream 96bp
chr5 121761178 121761178 1 + C T rs55770446 121761176 + 121761156 121761196 41 CTTTGATGGGAGAAGACTGCCTCAATGAGCGCAACACTGAG CTTTGATGGGAGAAGACTGCCTTAATGAGCGCAACACTGAG < 41bp 0.725178977605418 0.4344253954943 0.9141473 0.14294407 prediction 0.450357955210837 Functional Loss - SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121761176 chr5:121761178 stopgain 0.888 0 23 hm5C_associated_SNPs_78249 1 0 0 0 1 SNCAIP chr5:121761226 5'GT 121761226 Upstream 49bp
chr15 74627332 74627332 1 + G A SKCM 74627329 + 74627309 74627349 41 TCTGCAGTTAGAGGACTCAGCTCGACGCTGGGGACGAGAGA TCTGCAGTTAGAGGACTCAGCTCAACGCTGGGGACGAGAGA < 41bp 0.725171490093706 0.48510018512564 0.22793123 0.17139316 prediction 0.450342980187412 Functional Loss - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74627329 chr15:74627332 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_78252 0 0 0 0 2 CCDC33 chr15:74627316 3'AG 74627316 Downstream 17bp
chr15 74627332 74627332 1 + G A SKCM 74627329 + 74627309 74627349 41 TCTGCAGTTAGAGGACTCAGCTCGACGCTGGGGACGAGAGA TCTGCAGTTAGAGGACTCAGCTCAACGCTGGGGACGAGAGA < 41bp 0.725171490093706 0.48510018512564 0.22793123 0.17139316 prediction 0.450342980187412 Functional Loss - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74627329 chr15:74627332 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_78252 0 0 0 0 2 CCDC33 chr15:74627429 5'GT 74627429 Upstream 98bp
chrX 22245695 22245695 1 + C T rs766459849 22245692 + 22245672 22245712 41 CTTCTACCAGGCATCACATTCACCAACAACCAGCTCTTCTT CTTCTACCAGGCATCACATTCACTAACAACCAGCTCTTCTT < 41bp 0.725160060635291 0.497573072663252 0.31290525 0.30529422 prediction 0.450320121270583 Functional Loss - PHEX ENSG00000102174 CDS Human protein_coding chrX:22245692 chrX:22245695 synonymous SNV . 0 24 hm5C_associated_SNPs_78255 0 0 0 0 2 PHEX chrX:22245624 3'AG 22245624 Downstream 72bp
chrX 22245695 22245695 1 + C T rs766459849 22245692 + 22245672 22245712 41 CTTCTACCAGGCATCACATTCACCAACAACCAGCTCTTCTT CTTCTACCAGGCATCACATTCACTAACAACCAGCTCTTCTT < 41bp 0.725160060635291 0.497573072663252 0.31290525 0.30529422 prediction 0.450320121270583 Functional Loss - PHEX ENSG00000102174 CDS Human protein_coding chrX:22245692 chrX:22245695 synonymous SNV . 0 24 hm5C_associated_SNPs_78255 0 0 0 0 2 PHEX chrX:22245728 5'GT 22245728 Upstream 34bp
chr2 103142729 103142729 1 + G A SKCM 103142726 + 103142706 103142746 41 TGCTACCCACAGGCTGGCACCAAGAATATCCGCTACCTCTC TGCTACCCACAGGCTGGCACCAAAAATATCCGCTACCTCTC < 41bp 0.770662662610726 0.545503918320835 0.12610587 0.14836189 prediction 0.450317488579782 Functional Loss - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103142726 chr2:103142729 synonymous SNV . 0 24 hm5C_associated_SNPs_78256 0 0 0 0 2 SLC9A4 chr2:103142718 3'AG 103142718 Downstream 12bp
chr2 103142729 103142729 1 + G A SKCM 103142726 + 103142706 103142746 41 TGCTACCCACAGGCTGGCACCAAGAATATCCGCTACCTCTC TGCTACCCACAGGCTGGCACCAAAAATATCCGCTACCTCTC < 41bp 0.770662662610726 0.545503918320835 0.12610587 0.14836189 prediction 0.450317488579782 Functional Loss - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103142726 chr2:103142729 synonymous SNV . 0 24 hm5C_associated_SNPs_78256 0 0 0 0 2 SLC9A4 chr2:103142805 5'GT 103142805 Upstream 77bp
chr17 40717265 40717265 1 + G A GBM 40717262 + 40717242 40717282 41 CAGAAGCAGCTGAAGATACTCACGGACATTATGTGGCCAAT CAGAAGCAGCTGAAGATACTCACAGACATTATGTGGCCAAT < 41bp 0.768906055103623 0.54374935010256 0.76796997 0.35782135 prediction 0.450313410002127 Functional Loss - COASY ENSG00000068120 CDS Human protein_coding chr17:40717262 chr17:40717265 synonymous SNV . 0 24 hm5C_associated_SNPs_78258 0 0 1 0 1 COASY chr17:40717245 3'AG 40717245 Downstream 21bp
chr16 72057421 72057421 1 + C T rs61733129 72057419 + 72057399 72057439 41 GGTGTGAGCAGCGGGCAGGACGCGCTGGAGAAGATCCGGGC GGTGTGAGCAGCGGGCAGGACGTGCTGGAGAAGATCCGGGC < 41bp 0.83763450979547 0.612479951296103 0.581784 0.7498222 prediction 0.450309116998734 Functional Loss - DHODH ENSG00000102967 CDS Human protein_coding chr16:72057419 chr16:72057421 nonsynonymous SNV 0.985 5 23 hm5C_associated_SNPs_78260 2 0 0 0 1 DHODH chr16:72057373 3'AG 72057373 Downstream 49bp
chr6 31975481 31975481 1 + G A SKCM 31975478 + 31975458 31975498 41 GACTGTAGGAGGAGCTAGACCACGAACTGGGCCCTGGTGCC GACTGTAGGAGGAGCTAGACCACAAACTGGGCCCTGGTGCC < 41bp 0.725992359065712 0.500837879131427 0.19152132 0.13315776 prediction 0.45030895986857 Functional Loss - CYP21A2 ENSG00000204338 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:31975478 chr6:31975481 . . 0 24 hm5C_associated_SNPs_78261 0 0 0 0 1 CYP21A2 chr6:31975448 3'AG 31975448 Downstream 34bp
chr17 37809812 37809812 1 + C T UCEC 37809810 + 37809790 37809830 41 CAAGCTGCCCAGGGAGCTGACCCGAGACTTGGAGCGCAGCC CAAGCTGCCCAGGGAGCTGACCTGAGACTTGGAGCGCAGCC < 41bp 0.725152785198445 0.462182530813199 0.7266345 0.8431262 prediction 0.450305570396889 Functional Loss - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37809810 chr17:37809812 stopgain 0.003 0 23 hm5C_associated_SNPs_78262 0 0 1 0 1 STARD3 chr17:37809734 3'AG 37809734 Downstream 79bp
chr11 44102798 44102798 1 + G C rs148926432 44102794 + 44102774 44102814 41 AACCAGGATGTGGCCACTGCCGTGGCTTCCCTCTGCCGCTA AACCAGGATGTGGCCACTGCCGTGCCTTCCCTCTGCCGCTA < 41bp 0.725151531314927 0.427678294544717 0.9005227 0.35066047 prediction 0.450303062629854 Functional Loss - ACCS ENSG00000110455 CDS Human protein_coding chr11:44102794 chr11:44102798 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_78263 0 0 0 0 2 ACCS chr11:44102729 3'AG 44102729 Downstream 70bp
chr11 44102798 44102798 1 + G C rs148926432 44102794 + 44102774 44102814 41 AACCAGGATGTGGCCACTGCCGTGGCTTCCCTCTGCCGCTA AACCAGGATGTGGCCACTGCCGTGCCTTCCCTCTGCCGCTA < 41bp 0.725151531314927 0.427678294544717 0.9005227 0.35066047 prediction 0.450303062629854 Functional Loss - ACCS ENSG00000110455 CDS Human protein_coding chr11:44102794 chr11:44102798 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_78263 0 0 0 0 2 ACCS chr11:44102870 5'GT 44102870 Upstream 73bp
chr4 160253700 160253700 1 + C T SKCM 160253697 + 160253677 160253717 41 ATTAAAAAGGCCAGTCGCTACTCCATTCCAGATCTTGCTGT ATTAAAAAGGCCAGTCGCTACTCTATTCCAGATCTTGCTGT < 41bp 0.754655965157988 0.529507206936299 0.96099675 0.93230635 prediction 0.450297516443379 Functional Loss - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160253697 chr4:160253700 synonymous SNV . 0 24 hm5C_associated_SNPs_78266 0 0 1 0 1 RAPGEF2 chr4:160253603 3'AG 160253603 Downstream 98bp
chr2 27157476 27157476 1 + C T GBM 27157473 + 27157453 27157493 41 TGTGCTGGCGGAGACCACCACTGCACATGCCACGCTGACAG TGTGCTGGCGGAGACCACCACTGTACATGCCACGCTGACAG < 41bp 0.764003463961953 0.538856166764567 0.7053285 0.46718907 prediction 0.450294594394772 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157473 chr2:27157476 nonsynonymous SNV 0.790 5 24 hm5C_associated_SNPs_78267 0 0 0 0 1 DPYSL5 chr2:27157446 3'AG 27157446 Downstream 31bp
chr17 40837047 40837047 1 + C T UCEC 40837045 + 40837025 40837065 41 TGAACGAGTCGGCGGTGGTGCGCCATGACCTGCACTTCCAC TGAACGAGTCGGCGGTGGTGCGTCATGACCTGCACTTCCAC < 41bp 0.725136969392257 0.435354383764951 0.2507658 0.24602535 prediction 0.450273938784514 Functional Loss - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40837045 chr17:40837047 synonymous SNV . 0 23 hm5C_associated_SNPs_78270 0 0 0 0 1 CNTNAP1 chr17:40837009 3'AG 40837009 Downstream 39bp
chrX 54835802 54835802 1 + G A COAD 54835799 + 54835779 54835819 41 CGAGAGTGGTGCAGGTCTAACTCGCTTCCAGGTAAGGCCTC CGAGAGTGGTGCAGGTCTAACTCACTTCCAGGTAAGGCCTC < 41bp 0.725135699291678 0.472764155926383 0.25796986 0.2002976 prediction 0.450271398583357 Functional Loss - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54835799 chrX:54835802 nonsynonymous SNV 0.980 2 24 hm5C_associated_SNPs_78272 0 0 1 0 2 MAGED2 chrX:54835736 3'AG 54835736 Downstream 67bp
chrX 54835802 54835802 1 + G A COAD 54835799 + 54835779 54835819 41 CGAGAGTGGTGCAGGTCTAACTCGCTTCCAGGTAAGGCCTC CGAGAGTGGTGCAGGTCTAACTCACTTCCAGGTAAGGCCTC < 41bp 0.725135699291678 0.472764155926383 0.25796986 0.2002976 prediction 0.450271398583357 Functional Loss - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54835799 chrX:54835802 nonsynonymous SNV 0.980 2 24 hm5C_associated_SNPs_78272 0 0 1 0 2 MAGED2 chrX:54835809 5'GT 54835809 Upstream 8bp
chr20 1229329 1229329 1 + G T READ 1229327 + 1229307 1229347 41 GATGGAATGGAAGAATACTTCAGATGTTAAATCGTTTACGG GATGGAATGGAAGAATACTTCATATGTTAAATCGTTTACGG < 41bp 0.725130936820891 0.386826526370303 0.46413952 0.16526386 prediction 0.450261873641782 Functional Loss - RAD21L1 ENSG00000244588 CDS Human protein_coding chr20:1229327 chr20:1229329 nonsynonymous SNV 0.388 0 23 hm5C_associated_SNPs_78273 0 0 0 0 2 RAD21L1 chr20:1229270 3'AG 1229270 Downstream 60bp
chr20 1229329 1229329 1 + G T READ 1229327 + 1229307 1229347 41 GATGGAATGGAAGAATACTTCAGATGTTAAATCGTTTACGG GATGGAATGGAAGAATACTTCATATGTTAAATCGTTTACGG < 41bp 0.725130936820891 0.386826526370303 0.46413952 0.16526386 prediction 0.450261873641782 Functional Loss - RAD21L1 ENSG00000244588 CDS Human protein_coding chr20:1229327 chr20:1229329 nonsynonymous SNV 0.388 0 23 hm5C_associated_SNPs_78273 0 0 0 0 2 RAD21L1 chr20:1229347 5'GT 1229347 Upstream 19bp
chr13 80107522 80107522 1 + T C UCEC 80107521 + 80107501 80107541 41 TAGCGTTGCTACCTCTCTTCCTACATACGATGAAGCTGAGA TAGCGTTGCTACCTCTCTTCCCACATACGATGAAGCTGAGA < 41bp 0.72512973666337 0.453401447250446 0.88908947 0.23514244 prediction 0.45025947332674 Functional Loss - NDFIP2 ENSG00000102471 CDS Human protein_coding chr13:80107521 chr13:80107522 synonymous SNV . 0 22 hm5C_associated_SNPs_78274 0 0 1 0 1 NDFIP2 chr13:80107458 3'AG 80107458 Downstream 65bp
chr7 99818184 99818184 1 + C T LUAD 99818182 + 99818162 99818202 41 GTGCCCAGGGCTCTCTGCCCCGCCGACTCCTGCCCCCATTC GTGCCCAGGGCTCTCTGCCCCGTCGACTCCTGCCCCCATTC < 41bp 0.725126172544856 0.466425956475257 0.2983555 0.19567096 prediction 0.450252345089713 Functional Loss - PVRIG ENSG00000213413 CDS Human protein_coding chr7:99818182 chr7:99818184 nonsynonymous SNV 0.023 1 23 hm5C_associated_SNPs_78278 0 0 0 0 1 PVRIG chr7:99818170 3'AG 99818170 Downstream 15bp
chr8 11643550 11643550 1 + G A UCEC 11643547 + 11643527 11643567 41 CGGTTCAGTCCTGAGTGCCTCGCGTCGGGAGGTCCTGGTGG CGGTTCAGTCCTGAGTGCCTCGCATCGGGAGGTCCTGGTGG < 41bp 0.802185696203945 0.577063078778551 0.69567615 0.25541812 prediction 0.450245234850787 Functional Loss - NEIL2 ENSG00000154328 CDS Human protein_coding chr8:11643547 chr8:11643550 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_78280 0 0 0 0 1 NEIL2 chr8:11643472 3'AG 11643472 Downstream 79bp
chr2 101096965 101096965 1 + G A LIHC 101096962 + 101096942 101096982 41 CCTCATTTCCTTGCAGGGCTCGGGGACTGCTGCAGTGGACT CCTCATTTCCTTGCAGGGCTCGGAGACTGCTGCAGTGGACT < 41bp 0.7643615676042 0.539240282476246 0.91197634 0.88017344 prediction 0.450242570255909 Functional Loss - NMS ENSG00000204640 CDS Human protein_coding chr2:101096962 chr2:101096965 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_78282 0 0 0 0 2 NMS chr2:101096958 3'AG 101096958 Downstream 8bp
chr2 101096965 101096965 1 + G A LIHC 101096962 + 101096942 101096982 41 CCTCATTTCCTTGCAGGGCTCGGGGACTGCTGCAGTGGACT CCTCATTTCCTTGCAGGGCTCGGAGACTGCTGCAGTGGACT < 41bp 0.7643615676042 0.539240282476246 0.91197634 0.88017344 prediction 0.450242570255909 Functional Loss - NMS ENSG00000204640 CDS Human protein_coding chr2:101096962 chr2:101096965 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_78282 0 0 0 0 2 NMS chr2:101096993 5'GT 101096993 Upstream 29bp
chr17 72588368 72588368 1 - T G GBM 72588369 - 72588349 72588389 41 GGGCACCAGACACCTGTGATCACCAAGGAGAGGAGAGGAGA GGGCACCAGACACCTGTGATCCCCAAGGAGAGGAGAGGAGA < 41bp 0.794361610080037 0.56924150706775 0.25577688 0.09478465 prediction 0.450240206024573 Functional Loss - C17orf77 ENSG00000182352 CDS Human other chr17:72588369 chr17:72588368 synonymous SNV . 0 22 hm5C_associated_SNPs_78284 0 0 0 0 1 C17orf77;CD300LD chr17:72588302 5'GT 72588302 Upstream 67bp
chr17 12647729 12647729 1 + T C rs76490220 12647728 + 12647708 12647748 41 AGCAACACCGATTCAGCTACCTAGGGATGCACCAAGCTCAG AGCAACACCGATTCAGCTACCCAGGGATGCACCAAGCTCAG < 41bp 0.769979812720087 0.544860650332715 0.12421936 0.8655438 prediction 0.450238324774744 Functional Loss - MYOCD ENSG00000141052;ENSG00000273452 CDS Human other chr17:12647728 chr17:12647729 nonsynonymous SNV 0.986 0 22 hm5C_associated_SNPs_78286 0 0 0 0 1 MYOCD chr17:12647753 5'GT 12647753 Upstream 25bp
chr2 148680553 148680553 1 + G T SARC 148680551 + 148680531 148680571 41 ATCTTTTTCAGGTTGGTACCCGGAGGTACATGGCTCCAGAG ATCTTTTTCAGGTTGGTACCCGTAGGTACATGGCTCCAGAG < 41bp 0.72511815754884 0.377549248662751 0.929798 0.89083725 prediction 0.450236315097681 Functional Loss - ACVR2A ENSG00000121989 CDS Human protein_coding chr2:148680551 chr2:148680553 synonymous SNV . 0 23 hm5C_associated_SNPs_78287 0 0 0 0 1 ACVR2A chr2:148680542 3'AG 148680542 Downstream 12bp
chr16 30680407 30680407 1 + G A UCEC 30680404 + 30680384 30680424 41 CTCCAGGGACCTCCCCTTCTCACGGCCCCAGCTCCGAGTTT CTCCAGGGACCTCCCCTTCTCACAGCCCCAGCTCCGAGTTT < 41bp 0.800675075381221 0.575560185735261 0.5368563 0.24842495 prediction 0.450229779291919 Functional Loss - FBRS ENSG00000156860 CDS Human protein_coding chr16:30680404 chr16:30680407 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_78288 0 0 0 0 1 FBRS chr16:30680390 3'AG 30680390 Downstream 18bp
chr17 37357471 37357471 1 + T C UCEC 37357470 + 37357450 37357490 41 TTTTCTGTGTGTCTAGTATGCTCAGGCTTCAGAAGAGGCTC TTTTCTGTGTGTCTAGTATGCCCAGGCTTCAGAAGAGGCTC < 41bp 0.772669468659671 0.547560241199765 0.106850386 0.120996535 prediction 0.450218454919811 Functional Loss - RPL19 ENSG00000108298 CDS Human protein_coding chr17:37357470 chr17:37357471 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_78291 0 0 1 0 1 RPL19 chr17:37357466 3'AG 37357466 Downstream 6bp
chr10 99340624 99340624 1 + G T SARC 99340622 + 99340602 99340642 41 CTGGGGACAGTTCCGTCGGACAGCACTGCACCGAGCTTCCC CTGGGGACAGTTCCGTCGGACATCACTGCACCGAGCTTCCC < 41bp 0.725107666790705 0.367711441664304 0.24427417 0.16857603 prediction 0.450215333581411 Functional Loss - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99340622 chr10:99340624 nonsynonymous SNV 0.991 3 23 hm5C_associated_SNPs_78293 0 0 1 0 2 ANKRD2 chr10:99340612 3'AG 99340612 Downstream 13bp
chr10 99340624 99340624 1 + G T SARC 99340622 + 99340602 99340642 41 CTGGGGACAGTTCCGTCGGACAGCACTGCACCGAGCTTCCC CTGGGGACAGTTCCGTCGGACATCACTGCACCGAGCTTCCC < 41bp 0.725107666790705 0.367711441664304 0.24427417 0.16857603 prediction 0.450215333581411 Functional Loss - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99340622 chr10:99340624 nonsynonymous SNV 0.991 3 23 hm5C_associated_SNPs_78293 0 0 1 0 2 ANKRD2 chr10:99340710 5'GT 99340710 Upstream 87bp
chrX 49597176 49597176 1 + G A SKCM 49597173 + 49597153 49597193 41 GGAAATGGATCTGGAAAAGACTCGGAGTGAGCGTGGAGATG GGAAATGGATCTGGAAAAGACTCAGAGTGAGCGTGGAGATG < 41bp 0.774219154906552 0.549112571931902 0.044512898 0.016333252 prediction 0.450213165949301 Functional Loss - PAGE4 ENSG00000101951 CDS Human protein_coding chrX:49597173 chrX:49597176 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_78295 0 0 0 0 2 PAGE4 chrX:49597128 3'AG 49597128 Downstream 49bp
chrX 49597176 49597176 1 + G A SKCM 49597173 + 49597153 49597193 41 GGAAATGGATCTGGAAAAGACTCGGAGTGAGCGTGGAGATG GGAAATGGATCTGGAAAAGACTCAGAGTGAGCGTGGAGATG < 41bp 0.774219154906552 0.549112571931902 0.044512898 0.016333252 prediction 0.450213165949301 Functional Loss - PAGE4 ENSG00000101951 CDS Human protein_coding chrX:49597173 chrX:49597176 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_78295 0 0 0 0 2 PAGE4 chrX:49597253 5'GT 49597253 Upstream 78bp
chr17 54431265 54431265 1 + C T BRCA 54431263 + 54431243 54431283 41 ACATGGATGCTGTGCAGATCCTCCTGTATCAGTACACACCA ACATGGATGCTGTGCAGATCCTTCTGTATCAGTACACACCA < 41bp 0.725101012017983 0.424140948946649 0.12244037 0.10497719 prediction 0.450202024035967 Functional Loss - ANKFN1 ENSG00000153930 CDS Human protein_coding chr17:54431263 chr17:54431265 synonymous SNV . 0 23 hm5C_associated_SNPs_78300 0 0 0 0 1 ANKFN1 chr17:54431197 3'AG 54431197 Downstream 69bp
chr6 35210914 35210914 1 + G A SKCM 35210911 + 35210891 35210931 41 TCCTGCTGCGCCTGGCAGGCCTTGATTATGAGCTGGCCCAC TCCTGCTGCGCCTGGCAGGCCTTAATTATGAGCTGGCCCAC < 41bp 0.78371049113108 0.558611119087293 0.11102739 0.19972599 prediction 0.450198744087574 Functional Loss - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35210911 chr6:35210914 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_78301 0 0 0 0 1 SCUBE3 chr6:35211013 5'GT 35211013 Upstream 100bp
chr1 167973219 167973219 1 + G A UCEC 167973216 + 167973196 167973236 41 CAATAGAGGACGAGGAAGATCTCGACCCAGAGGTAATTTTT CAATAGAGGACGAGGAAGATCTCAACCCAGAGGTAATTTTT < 41bp 0.741244327625423 0.516145312074435 0.4353797 0.15083107 prediction 0.450198031101976 Functional Loss - DCAF6 ENSG00000143164 CDS Human protein_coding chr1:167973216 chr1:167973219 nonsynonymous SNV 0.980 1 24 hm5C_associated_SNPs_78302 0 0 1 0 1 DCAF6 chr1:167973227 5'GT 167973227 Upstream 9bp
chr14 24601013 24601013 1 + G C THCA 24601012 + 24600992 24601032 41 GTCAACCCTCGGACTATCTTCGCCAGCCACGGCAACTTCTT GTCAACCCTCGGACTATCTTCCCCAGCCACGGCAACTTCTT < 41bp 0.725098951804389 0.409420722672903 0.29181343 0.018734932 prediction 0.450197903608778 Functional Loss - FITM1 ENSG00000139914;ENSG00000259371 CDS Human other chr14:24601012 chr14:24601013 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_78303 0 0 0 0 1 FITM1 chr14:24601038 5'GT 24601038 Upstream 26bp
chr1 210411352 210411352 1 + C T BLCA 210411350 + 210411330 210411370 41 AGATTCTGCGAGCCCATTGTCTCGGAAGGAGCTGCTGAAAT AGATTCTGCGAGCCCATTGTCTTGGAAGGAGCTGCTGAAAT < 41bp 0.850089501595099 0.624991927118426 0.7491117 0.39734298 prediction 0.450195148953345 Functional Loss - SERTAD4 ENSG00000082497 CDS Human protein_coding chr1:210411350 chr1:210411352 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_78305 0 0 1 0 1 SERTAD4 chr1:210411289 3'AG 210411289 Downstream 64bp
chr20 17434393 17434393 1 + G A OV 17434390 + 17434370 17434410 41 TCCCCTGCTCTCCCCAGGGCCGCGGCGGCAAAGGCAGCATC TCCCCTGCTCTCCCCAGGGCCGCAGCGGCAAAGGCAGCATC < 41bp 0.77360730471707 0.548511325491715 0.8709802 0.44464126 prediction 0.450191958450711 Functional Loss - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17434390 chr20:17434393 nonsynonymous SNV 0.706 2 24 hm5C_associated_SNPs_78306 0 0 0 0 1 PCSK2 chr20:17434387 3'AG 17434387 Downstream 7bp
chr1 10067716 10067716 1 + G A UCEC 10067713 + 10067693 10067733 41 GGGGATTCTTTTACCATCCACACGAACAGCAGCCTAAGGAA GGGGATTCTTTTACCATCCACACAAACAGCAGCCTAAGGAA < 41bp 0.782540965522329 0.557448165044825 0.03491497 0.0069637 prediction 0.450185600955009 Functional Loss - RBP7 ENSG00000162444 CDS Human protein_coding chr1:10067713 chr1:10067716 synonymous SNV . 0 24 hm5C_associated_SNPs_78308 0 0 0 1 2 RBP7 chr1:10067628 3'AG 10067628 Downstream 89bp
chr1 10067716 10067716 1 + G A UCEC 10067713 + 10067693 10067733 41 GGGGATTCTTTTACCATCCACACGAACAGCAGCCTAAGGAA GGGGATTCTTTTACCATCCACACAAACAGCAGCCTAAGGAA < 41bp 0.782540965522329 0.557448165044825 0.03491497 0.0069637 prediction 0.450185600955009 Functional Loss - RBP7 ENSG00000162444 CDS Human protein_coding chr1:10067713 chr1:10067716 synonymous SNV . 0 24 hm5C_associated_SNPs_78308 0 0 0 1 2 RBP7 chr1:10067806 5'GT 10067806 Upstream 91bp
chr5 75581107 75581107 1 + G A COAD 75581104 + 75581084 75581124 41 CACATTCATGCCTGAAAGCCCACGATTCTTGTTGGAGGTAA CACATTCATGCCTGAAAGCCCACAATTCTTGTTGGAGGTAA < 41bp 0.759213238910742 0.53412327433638 0.0841082 0.052698374 prediction 0.450179929148723 Functional Loss - SV2C ENSG00000122012 CDS Human protein_coding chr5:75581104 chr5:75581107 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_78312 0 0 0 0 1 SV2C chr5:75581120 5'GT 75581120 Upstream 14bp
chr11 44146379 44146379 1 + C T rs150687734 44146376 + 44146356 44146396 41 TCCTGTCATCTCAGGTGGGTCTCCATCCTGAGTACAGAGAG TCCTGTCATCTCAGGTGGGTCTCTATCCTGAGTACAGAGAG < 41bp 0.760574768807516 0.535487000803178 0.9339206 0.41189086 prediction 0.450175536008677 Functional Loss - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44146376 chr11:44146379 nonsynonymous SNV 0.384 4 24 hm5C_associated_SNPs_78313 0 0 1 0 1 EXT2 chr11:44146339 3'AG 44146339 Downstream 41bp
chr1 2520061 2520061 1 + A C STAD 2520057 + 2520037 2520077 41 AGCGGAGGGCTGCTGGTGGTCAGCAAAGGTGGGTCGAGGGA AGCGGAGGGCTGCTGGTGGTCAGCCAAGGTGGGTCGAGGGA < 41bp 0.930927745737611 0.705842897635837 0.54063004 0.35602805 prediction 0.450169696203548 Functional Loss - FAM213B ENSG00000157870 CDS Human protein_coding chr1:2520057 chr1:2520061 nonsynonymous SNV 0.929 4 25 hm5C_associated_SNPs_78316 0 0 1 0 3 FAM213B chr1:2519969 3'AG 2519969 Downstream 93bp
chr1 2520061 2520061 1 + A C STAD 2520057 + 2520037 2520077 41 AGCGGAGGGCTGCTGGTGGTCAGCAAAGGTGGGTCGAGGGA AGCGGAGGGCTGCTGGTGGTCAGCCAAGGTGGGTCGAGGGA < 41bp 0.930927745737611 0.705842897635837 0.54063004 0.35602805 prediction 0.450169696203548 Functional Loss - FAM213B ENSG00000157870 CDS Human protein_coding chr1:2520057 chr1:2520061 nonsynonymous SNV 0.929 4 25 hm5C_associated_SNPs_78316 0 0 1 0 3 FAM213B chr1:2519989 3'AG 2519989 Downstream 73bp
chr1 2520061 2520061 1 + A C STAD 2520057 + 2520037 2520077 41 AGCGGAGGGCTGCTGGTGGTCAGCAAAGGTGGGTCGAGGGA AGCGGAGGGCTGCTGGTGGTCAGCCAAGGTGGGTCGAGGGA < 41bp 0.930927745737611 0.705842897635837 0.54063004 0.35602805 prediction 0.450169696203548 Functional Loss - FAM213B ENSG00000157870 CDS Human protein_coding chr1:2520057 chr1:2520061 nonsynonymous SNV 0.929 4 25 hm5C_associated_SNPs_78316 0 0 1 0 3 FAM213B chr1:2520064 5'GT 2520064 Upstream 4bp
chr5 176795163 176795163 1 + G A rs112465391 176795160 + 176795140 176795180 41 TCGCTCCCTCTTCACTAGAGCTGGGCGGGACTGCAAACGCC TCGCTCCCTCTTCACTAGAGCTGAGCGGGACTGCAAACGCC < 41bp 0.725084073684816 0.473148814745778 0.62890595 0.314431 prediction 0.450168147369633 Functional Loss - RGS14 ENSG00000169220 CDS Human protein_coding chr5:176795160 chr5:176795163 nonsynonymous SNV 0.103 0 24 hm5C_associated_SNPs_78318 0 0 1 0 1 RGS14 chr5:176795158 3'AG 176795158 Downstream 6bp
chr7 7646687 7646687 1 + A C rs4222 7646683 + 7646663 7646703 41 TAAATGTATGCAGTTGGATACAACAGGGAATCTGGTACCTG TAAATGTATGCAGTTGGATACAACCGGGAATCTGGTACCTG < 41bp 0.725083033181156 0.322156807447911 0.17576462 0.15298855 prediction 0.450166066362311 Functional Loss - MIOS ENSG00000164654 CDS Human protein_coding chr7:7646683 chr7:7646687 synonymous SNV . 0 25 hm5C_associated_SNPs_78320 0 0 0 0 1 MIOS chr7:7646627 3'AG 7646627 Downstream 61bp
chr11 65820161 65820161 1 + G A CHOL 65820158 + 65820138 65820178 41 CTGCAGGTAATCGCGAGGAGCTGGTGGAGCGGCTGCAGAGC CTGCAGGTAATCGCGAGGAGCTGATGGAGCGGCTGCAGAGC < 41bp 0.800306254645843 0.575224809913482 0.8787545 0.9012052 prediction 0.450162889464722 Functional Loss - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65820158 chr11:65820161 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_78322 0 0 1 0 2 SF3B2 chr11:65820144 3'AG 65820144 Downstream 18bp
chr11 65820161 65820161 1 + G A CHOL 65820158 + 65820138 65820178 41 CTGCAGGTAATCGCGAGGAGCTGGTGGAGCGGCTGCAGAGC CTGCAGGTAATCGCGAGGAGCTGATGGAGCGGCTGCAGAGC < 41bp 0.800306254645843 0.575224809913482 0.8787545 0.9012052 prediction 0.450162889464722 Functional Loss - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65820158 chr11:65820161 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_78322 0 0 1 0 2 SF3B2 chr11:65820190 5'GT 65820190 Upstream 30bp
chr5 6751223 6751223 1 + G A BLCA 6751220 + 6751200 6751240 41 CTGCAAGCGCCAGCTCCTCTCATGGCCGGCTTACCCACCGC CTGCAAGCGCCAGCTCCTCTCATAGCCGGCTTACCCACCGC < 41bp 0.795722443826251 0.570642207642107 0.88379705 0.73459435 prediction 0.450160472368286 Functional Loss - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6751220 chr5:6751223 nonsynonymous SNV 0.753 0 24 hm5C_associated_SNPs_78324 0 0 1 0 2 PAPD7 chr5:6751152 3'AG 6751152 Downstream 72bp
chr5 6751223 6751223 1 + G A BLCA 6751220 + 6751200 6751240 41 CTGCAAGCGCCAGCTCCTCTCATGGCCGGCTTACCCACCGC CTGCAAGCGCCAGCTCCTCTCATAGCCGGCTTACCCACCGC < 41bp 0.795722443826251 0.570642207642107 0.88379705 0.73459435 prediction 0.450160472368286 Functional Loss - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6751220 chr5:6751223 nonsynonymous SNV 0.753 0 24 hm5C_associated_SNPs_78324 0 0 1 0 2 PAPD7 chr5:6751310 5'GT 6751310 Upstream 88bp
chr1 159779226 159779226 1 + C T STAD 159779224 + 159779204 159779244 41 GTCCTGTGCTCACTCTGCACCACGGGCCTGCTGACCCTGCT GTCCTGTGCTCACTCTGCACCATGGGCCTGCTGACCCTGCT < 41bp 0.808165907973683 0.583090183920879 0.38290465 0.2037071 prediction 0.450151448105609 Functional Loss - FCRL6 ENSG00000181036 CDS Human protein_coding chr1:159779224 chr1:159779226 synonymous SNV . 0 23 hm5C_associated_SNPs_78326 0 0 0 0 1 FCRL6 chr1:159779192 3'AG 159779192 Downstream 35bp
chrX 69563737 69563737 1 + G A KIRC 69563734 + 69563714 69563754 41 TTTGAATTTTCAGCTGCAAACTGGATCTTCAAAAGCTAGTG TTTGAATTTTCAGCTGCAAACTGAATCTTCAAAAGCTAGTG < 41bp 0.725075137497574 0.497564718455434 0.06223029 0.036021203 prediction 0.450150274995148 Functional Loss - KIF4A ENSG00000090889 CDS Human protein_coding chrX:69563734 chrX:69563737 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_78327 0 0 1 0 2 KIF4A chrX:69563727 3'AG 69563727 Downstream 11bp
chrX 69563737 69563737 1 + G A KIRC 69563734 + 69563714 69563754 41 TTTGAATTTTCAGCTGCAAACTGGATCTTCAAAAGCTAGTG TTTGAATTTTCAGCTGCAAACTGAATCTTCAAAAGCTAGTG < 41bp 0.725075137497574 0.497564718455434 0.06223029 0.036021203 prediction 0.450150274995148 Functional Loss - KIF4A ENSG00000090889 CDS Human protein_coding chrX:69563734 chrX:69563737 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_78327 0 0 1 0 2 KIF4A chrX:69563832 5'GT 69563832 Upstream 96bp
chr2 239257977 239257977 1 + G A COAD 239257974 + 239257954 239257994 41 ATTTGGGTTTAGAAGAATTCCTCGGCCTGGGAGTGCAAGAC ATTTGGGTTTAGAAGAATTCCTCAGCCTGGGAGTGCAAGAC < 41bp 0.774310389047036 0.549237656399192 0.28843856 0.1546087 prediction 0.450145465295689 Functional Loss - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239257974 chr2:239257977 nonsynonymous SNV 0.971 4 24 hm5C_associated_SNPs_78329 0 0 1 0 2 TRAF3IP1 chr2:239257966 3'AG 239257966 Downstream 12bp
chr2 239257977 239257977 1 + G A COAD 239257974 + 239257954 239257994 41 ATTTGGGTTTAGAAGAATTCCTCGGCCTGGGAGTGCAAGAC ATTTGGGTTTAGAAGAATTCCTCAGCCTGGGAGTGCAAGAC < 41bp 0.774310389047036 0.549237656399192 0.28843856 0.1546087 prediction 0.450145465295689 Functional Loss - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239257974 chr2:239257977 nonsynonymous SNV 0.971 4 24 hm5C_associated_SNPs_78329 0 0 1 0 2 TRAF3IP1 chr2:239258049 5'GT 239258049 Upstream 73bp
chr20 61957036 61957036 1 + A T LUSC 61957032 + 61957012 61957052 41 TCTCCCAGGGCCACCCCGGCCACCAGGGCATCCCCGGGAGA TCTCCCAGGGCCACCCCGGCCACCTGGGCATCCCCGGGAGA < 41bp 0.725067757340699 0.397448442363338 0.38405943 0.35876513 prediction 0.450135514681398 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61957032 chr20:61957036 nonsynonymous SNV 0.124 1 25 hm5C_associated_SNPs_78331 0 0 0 0 2 COL20A1 chr20:61957020 3'AG 61957020 Downstream 17bp
chr20 61957036 61957036 1 + A T LUSC 61957032 + 61957012 61957052 41 TCTCCCAGGGCCACCCCGGCCACCAGGGCATCCCCGGGAGA TCTCCCAGGGCCACCCCGGCCACCTGGGCATCCCCGGGAGA < 41bp 0.725067757340699 0.397448442363338 0.38405943 0.35876513 prediction 0.450135514681398 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61957032 chr20:61957036 nonsynonymous SNV 0.124 1 25 hm5C_associated_SNPs_78331 0 0 0 0 2 COL20A1 chr20:61957073 5'GT 61957073 Upstream 38bp
chr20 35177519 35177519 1 + C T SKCM 35177517 + 35177497 35177537 41 CACCTCCGGGAGCTGCTCACCACCATGGGTGACCGCTTCAC CACCTCCGGGAGCTGCTCACCATCATGGGTGACCGCTTCAC < 41bp 0.842337847686876 0.617276300025303 0.067985654 0.09709108 prediction 0.450123095323147 Functional Loss - MYL9 ENSG00000101335 CDS Human protein_coding chr20:35177517 chr20:35177519 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_78337 0 0 0 0 1 MYL9 chr20:35177480 3'AG 35177480 Downstream 40bp
chr6 45480097 45480097 1 + G A HNSC 45480094 + 45480074 45480114 41 TACCACCCCGCTGTCTTCCACACGGGGCACTGGGCTTCCTG TACCACCCCGCTGTCTTCCACACAGGGCACTGGGCTTCCTG < 41bp 0.779122978536265 0.554063210295461 0.45076704 0.13356766 prediction 0.450119536481607 Functional Loss - RUNX2 ENSG00000124813 CDS Human protein_coding chr6:45480094 chr6:45480097 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_78340 0 0 0 0 1 RUNX2 chr6:45480144 5'GT 45480144 Upstream 48bp
chr6 74201963 74201963 1 + C T PAAD 74201961 + 74201941 74201981 41 TTTCATATATTTGCAGAGCTCTCGATGTTCTGAAGTATGAG TTTCATATATTTGCAGAGCTCTTGATGTTCTGAAGTATGAG < 41bp 0.725059356521595 0.425614357716369 0.60501456 0.10981262 prediction 0.45011871304319 Functional Loss - MTO1 ENSG00000135297 CDS Human protein_coding chr6:74201961 chr6:74201963 synonymous SNV . 0 23 hm5C_associated_SNPs_78341 0 0 1 0 1 MTO1 chr6:74201957 3'AG 74201957 Downstream 7bp
chr10 134014349 134014349 1 + G A SKCM 134014346 + 134014326 134014366 41 TGACCCTGGCTTGTTTCCAGCGGGGACCTCCAGGTGACAGG TGACCCTGGCTTGTTTCCAGCGGAGACCTCCAGGTGACAGG < 41bp 0.782685181194799 0.557627942377192 0.9187108 0.8768811 prediction 0.450114477635214 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134014346 chr10:134014349 synonymous SNV . 0 24 hm5C_associated_SNPs_78342 0 0 0 0 1 DPYSL4 chr10:134014346 3'AG 134014346 Downstream 4bp
chr10 124090749 124090749 1 + G T LGG 124090747 + 124090727 124090767 41 TCCCAGAGTCATGGCTCGACCAGGTTACAGTCAACCATTAC TCCCAGAGTCATGGCTCGACCATGTTACAGTCAACCATTAC < 41bp 0.725048779749484 0.371933288491844 0.3976519 0.07007733 prediction 0.450097559498968 Functional Loss - BTBD16 ENSG00000138152 CDS Human protein_coding chr10:124090747 chr10:124090749 nonsynonymous SNV 0.514 1 23 hm5C_associated_SNPs_78348 0 0 0 0 2 BTBD16 chr10:124090691 3'AG 124090691 Downstream 59bp
chr10 124090749 124090749 1 + G T LGG 124090747 + 124090727 124090767 41 TCCCAGAGTCATGGCTCGACCAGGTTACAGTCAACCATTAC TCCCAGAGTCATGGCTCGACCATGTTACAGTCAACCATTAC < 41bp 0.725048779749484 0.371933288491844 0.3976519 0.07007733 prediction 0.450097559498968 Functional Loss - BTBD16 ENSG00000138152 CDS Human protein_coding chr10:124090747 chr10:124090749 nonsynonymous SNV 0.514 1 23 hm5C_associated_SNPs_78348 0 0 0 0 2 BTBD16 chr10:124090773 5'GT 124090773 Upstream 25bp
chr8 22429919 22429919 1 + G A UCEC 22429916 + 22429896 22429936 41 CTGGAGCTGCGCGAGGGGGACAGGGTGGATGTCATGCAGCA CTGGAGCTGCGCGAGGGGGACAGAGTGGATGTCATGCAGCA < 41bp 0.781234178856447 0.556189644175544 0.8858679 0.8426265 prediction 0.450089069361806 Functional Loss - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22429916 chr8:22429919 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_78351 0 0 1 0 2 SORBS3 chr8:22429853 3'AG 22429853 Downstream 67bp
chr8 22429919 22429919 1 + G A UCEC 22429916 + 22429896 22429936 41 CTGGAGCTGCGCGAGGGGGACAGGGTGGATGTCATGCAGCA CTGGAGCTGCGCGAGGGGGACAGAGTGGATGTCATGCAGCA < 41bp 0.781234178856447 0.556189644175544 0.8858679 0.8426265 prediction 0.450089069361806 Functional Loss - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22429916 chr8:22429919 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_78351 0 0 1 0 2 SORBS3 chr8:22429959 5'GT 22429959 Upstream 41bp
chr16 1388988 1388988 1 + G C HNSC 1388987 + 1388967 1389007 41 AGACAGGGCTTGCCGTGCCTCGAGGTAAGGGTGCCACCCCC AGACAGGGCTTGCCGTGCCTCCAGGTAAGGGTGCCACCCCC < 41bp 0.8784055775092 0.653361415946361 0.9063767 0.6818806 prediction 0.450088323125678 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1388987 chr16:1388988 nonsynonymous SNV 0.098 3 22 hm5C_associated_SNPs_78352 0 0 0 0 2 BAIAP3 chr16:1388903 3'AG 1388903 Downstream 86bp
chr16 1388988 1388988 1 + G C HNSC 1388987 + 1388967 1389007 41 AGACAGGGCTTGCCGTGCCTCGAGGTAAGGGTGCCACCCCC AGACAGGGCTTGCCGTGCCTCCAGGTAAGGGTGCCACCCCC < 41bp 0.8784055775092 0.653361415946361 0.9063767 0.6818806 prediction 0.450088323125678 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1388987 chr16:1388988 nonsynonymous SNV 0.098 3 22 hm5C_associated_SNPs_78352 0 0 0 0 2 BAIAP3 chr16:1388990 5'GT 1388990 Upstream 3bp
chr19 41630628 41630628 1 + C T rs73545061 41630626 + 41630606 41630646 41 TTCCCGCTTCCTCTCCAGCCCGCGTGCAGGAGGAGATCGAC TTCCCGCTTCCTCTCCAGCCCGTGTGCAGGAGGAGATCGAC < 41bp 0.752549179167946 0.52750801459308 0.3551116 0.090310544 prediction 0.450082329149733 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41630626 chr19:41630628 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_78355 0 0 0 0 1 CYP2F1 chr19:41630624 3'AG 41630624 Downstream 5bp
chr1 109273354 109273354 1 + G A SKCM 109273351 + 109273331 109273371 41 ATCACCCAGTCAGTAATCAACGTGAGCTGGACTATTGGGAG ATCACCCAGTCAGTAATCAACGTAAGCTGGACTATTGGGAG < 41bp 0.747315642553243 0.522275351459951 0.34253716 0.33919305 prediction 0.450080582186584 Functional Loss - FNDC7 ENSG00000143107 CDS Human protein_coding chr1:109273351 chr1:109273354 synonymous SNV . 0 24 hm5C_associated_SNPs_78357 0 0 0 0 1 FNDC7 chr1:109273296 3'AG 109273296 Downstream 59bp
chrX 72674301 72674301 1 + G A GBM 72674298 + 72674278 72674318 41 CAGTTTGAGAATAGTGGAGGCTCGGTGCAAAGTGACTCTGA CAGTTTGAGAATAGTGGAGGCTCAGTGCAAAGTGACTCTGA < 41bp 0.730950817427613 0.505914316323916 0.19892454 0.17698959 prediction 0.450073002207395 Functional Loss - CDX4 ENSG00000131264 CDS Human protein_coding chrX:72674298 chrX:72674301 synonymous SNV . 0 24 hm5C_associated_SNPs_78358 0 0 0 0 1 CDX4 chrX:72674215 3'AG 72674215 Downstream 87bp
chrX 105197157 105197157 1 + G A COAD 105197154 + 105197134 105197174 41 AGCTGAGATTCCTGTGCACCCGGGGTGACAAGGTATAGCTT AGCTGAGATTCCTGTGCACCCGGAGTGACAAGGTATAGCTT < 41bp 0.767927321326834 0.542892309748424 0.9408215 0.912887 prediction 0.450070023156821 Functional Loss - NRK ENSG00000123572 CDS Human protein_coding chrX:105197154 chrX:105197157 nonsynonymous SNV 0.962 2 24 hm5C_associated_SNPs_78360 0 0 0 0 1 NRK chrX:105197165 5'GT 105197165 Upstream 9bp
chr14 23235939 23235939 1 + G T LUSC 23235937 + 23235917 23235957 41 ATGGGACTAATGTGCGGACGCCGGGAGCTTCTGCGCTTGCT ATGGGACTAATGTGCGGACGCCTGGAGCTTCTGCGCTTGCT < 41bp 0.725033490764147 0.362268218657781 0.89526904 0.7955718 prediction 0.450066981528295 Functional Loss - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23235937 chr14:23235939 nonsynonymous SNV 0.014 0 23 hm5C_associated_SNPs_78362 0 0 1 0 1 OXA1L chr14:23235973 5'GT 23235973 Upstream 35bp
chr20 37400215 37400215 1 + C T UCEC 37400213 + 37400193 37400233 41 GTGTTTCAGGTTCAACTTGCCTCGAACCCTGTGCTGGATGC GTGTTTCAGGTTCAACTTGCCTTGAACCCTGTGCTGGATGC < 41bp 0.851012175136337 0.625979246055165 0.9002887 0.15531564 prediction 0.450065858162345 Functional Loss - ACTR5 ENSG00000101442 CDS Human protein_coding chr20:37400213 chr20:37400215 nonsynonymous SNV 0.941 0 23 hm5C_associated_SNPs_78363 0 0 1 0 1 ACTR5 chr20:37400202 3'AG 37400202 Downstream 14bp
chr7 2740363 2740363 1 + G A READ 2740360 + 2740340 2740380 41 GCACCGGAAGCCCCGCCTGGCTCGGAAGCACATCTACCTAC GCACCGGAAGCCCCGCCTGGCTCAGAAGCACATCTACCTAC < 41bp 0.796452665762104 0.571427290397344 0.14158288 0.06641501 prediction 0.450050750729521 Functional Loss - AMZ1 ENSG00000174945 CDS Human protein_coding chr7:2740360 chr7:2740363 nonsynonymous SNV 0.841 2 24 hm5C_associated_SNPs_78365 0 0 0 0 1 AMZ1 chr7:2740389 5'GT 2740389 Upstream 27bp
chr12 122676099 122676099 1 + G A rs13377703 122676096 + 122676076 122676116 41 GAAGGCGAAATGAATGAGTCCGCGGGCGTCCTGGCCGAGGT GAAGGCGAAATGAATGAGTCCGCAGGCGTCCTGGCCGAGGT < 41bp 0.791235831660035 0.566216307255672 0.5665283 0.31257078 prediction 0.450039048808726 Functional Loss - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122676096 chr12:122676099 synonymous SNV . 0 24 hm5C_associated_SNPs_78369 0 0 0 0 1 LRRC43 chr12:122676114 5'GT 122676114 Upstream 16bp
chr11 120198227 120198227 1 + T C UCEC 120198226 + 120198206 120198246 41 TCTATATTTCTTTCTGCCACCTGAATAAGCACCGAAGCTAT TCTATATTTCTTTCTGCCACCCGAATAAGCACCGAAGCTAT < 41bp 0.792781400104378 0.567768001414804 0.33222914 0.3720999 prediction 0.450026797379148 Functional Loss - TMEM136 ENSG00000181264 CDS Human protein_coding chr11:120198226 chr11:120198227 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_78374 0 0 0 0 3 TMEM136 chr11:120198150 3'AG 120198150 Downstream 78bp
chr11 120198227 120198227 1 + T C UCEC 120198226 + 120198206 120198246 41 TCTATATTTCTTTCTGCCACCTGAATAAGCACCGAAGCTAT TCTATATTTCTTTCTGCCACCCGAATAAGCACCGAAGCTAT < 41bp 0.792781400104378 0.567768001414804 0.33222914 0.3720999 prediction 0.450026797379148 Functional Loss - TMEM136 ENSG00000181264 CDS Human protein_coding chr11:120198226 chr11:120198227 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_78374 0 0 0 0 3 TMEM136 chr11:120198161 3'AG 120198161 Downstream 67bp
chr11 120198227 120198227 1 + T C UCEC 120198226 + 120198206 120198246 41 TCTATATTTCTTTCTGCCACCTGAATAAGCACCGAAGCTAT TCTATATTTCTTTCTGCCACCCGAATAAGCACCGAAGCTAT < 41bp 0.792781400104378 0.567768001414804 0.33222914 0.3720999 prediction 0.450026797379148 Functional Loss - TMEM136 ENSG00000181264 CDS Human protein_coding chr11:120198226 chr11:120198227 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_78374 0 0 0 0 3 TMEM136 chr11:120198175 3'AG 120198175 Downstream 53bp
chr6 40347082 40347082 1 + C T UCEC 40347080 + 40347060 40347100 41 GGGAGGCAGTCTGCGCGCACCGCCATTTTCTAGGAACTGGG GGGAGGCAGTCTGCGCGCACCGTCATTTTCTAGGAACTGGG < 41bp 0.725011548043087 0.488969880611224 0.55185664 0.12884772 prediction 0.450023096086174 Functional Loss - TDRG1 ENSG00000204091 ncRNA_exonic Human antisense chr6:40347080 chr6:40347082 . . 0 23 hm5C_associated_SNPs_78375 0 0 0 1 1 TDRG1 chr6:40347021 3'AG 40347021 Downstream 62bp
chr19 10823857 10823857 1 + G A UCEC 10823854 + 10823834 10823874 41 AGCGCTTCCCGGACTTCGTGCGGGACTTCATGGGCGCCATG AGCGCTTCCCGGACTTCGTGCGGAACTTCATGGGCGCCATG < 41bp 0.80107302964427 0.576062489879397 0.92128336 0.8911466 prediction 0.450021079529747 Functional Loss - QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10823854 chr19:10823857 nonsynonymous SNV 0.613 0 24 hm5C_associated_SNPs_78376 0 0 1 0 1 QTRT1 chr19:10823873 5'GT 10823873 Upstream 17bp
chr16 88780820 88780820 1 + G A rs61730419 88780817 + 88780797 88780837 41 TGAGAAGCTGGTGAAGGGCCCCCGGGATGGCCCTGCTGCTG TGAGAAGCTGGTGAAGGGCCCCCAGGATGGCCCTGCTGCTG < 41bp 0.725010143717769 0.471568630055612 0.2495569 0.10814062 prediction 0.450020287435537 Functional Loss - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88780817 chr16:88780820 nonsynonymous SNV 0.021 1 24 hm5C_associated_SNPs_78377 0 0 1 0 2 CTU2 chr16:88780791 3'AG 88780791 Downstream 30bp
chr16 88780820 88780820 1 + G A rs61730419 88780817 + 88780797 88780837 41 TGAGAAGCTGGTGAAGGGCCCCCGGGATGGCCCTGCTGCTG TGAGAAGCTGGTGAAGGGCCCCCAGGATGGCCCTGCTGCTG < 41bp 0.725010143717769 0.471568630055612 0.2495569 0.10814062 prediction 0.450020287435537 Functional Loss - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88780817 chr16:88780820 nonsynonymous SNV 0.021 1 24 hm5C_associated_SNPs_78377 0 0 1 0 2 CTU2 chr16:88780894 5'GT 88780894 Upstream 75bp
chr22 21224644 21224644 1 + G C BLCA 21224640 + 21224620 21224660 41 CCCAGGAGCTCGCCCGTCAGCGAGGAGTCCTGGAGCGCACA CCCAGGAGCTCGCCCGTCAGCGAGCAGTCCTGGAGCGCACA < 41bp 0.866502825826802 0.641492808152608 0.9027916 0.7121836 prediction 0.450020035348388 Functional Loss - SNAP29 ENSG00000099940 CDS Human protein_coding chr22:21224640 chr22:21224644 nonsynonymous SNV 0.987 2 25 hm5C_associated_SNPs_78378 0 0 1 0 1 SNAP29 chr22:21224625 3'AG 21224625 Downstream 20bp
chr11 123471203 123471203 1 + G A SKCM 123471200 + 123471180 123471220 41 TCTTCACTTCGTTTGGGGCCCGGGATAGGACATATATGATG TCTTCACTTCGTTTGGGGCCCGGAATAGGACATATATGATG < 41bp 0.76171213568421 0.536702522752974 0.39957586 0.24282229 prediction 0.450019225862471 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123471200 chr11:123471203 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_78379 0 0 1 0 2 GRAMD1B chr11:123471176 3'AG 123471176 Downstream 28bp
chr11 123471203 123471203 1 + G A SKCM 123471200 + 123471180 123471220 41 TCTTCACTTCGTTTGGGGCCCGGGATAGGACATATATGATG TCTTCACTTCGTTTGGGGCCCGGAATAGGACATATATGATG < 41bp 0.76171213568421 0.536702522752974 0.39957586 0.24282229 prediction 0.450019225862471 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123471200 chr11:123471203 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_78379 0 0 1 0 2 GRAMD1B chr11:123471256 5'GT 123471256 Upstream 54bp
chr2 219735820 219735820 1 + A T UCEC 219735816 + 219735796 219735836 41 AGGCACGGCGGCTGGCCGGGCGGCAGGCCGAGTTGTGCCAG AGGCACGGCGGCTGGCCGGGCGGCTGGCCGAGTTGTGCCAG < 41bp 0.879716410335606 0.654709624444303 0.8406575 0.7890704 prediction 0.450013571782606 Functional Loss - WNT6 ENSG00000115596 CDS Human protein_coding chr2:219735816 chr2:219735820 nonsynonymous SNV 0.638 3 25 hm5C_associated_SNPs_78380 0 0 0 0 1 WNT6 chr2:219735749 3'AG 219735749 Downstream 72bp
chr1 160106452 160106452 1 + G A UCS 160106449 + 160106429 160106469 41 CACGGCTACTGGGAATCCGCCTCGACTGGGATGACCGGACC CACGGCTACTGGGAATCCGCCTCAACTGGGATGACCGGACC < 41bp 0.774942792431901 0.549937353292591 0.24829754 0.056877226 prediction 0.450010878278619 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160106449 chr1:160106452 nonsynonymous SNV 0.986 1 24 hm5C_associated_SNPs_78381 0 0 0 0 3 ATP1A2 chr1:160106360 3'AG 160106360 Downstream 93bp
chr1 160106452 160106452 1 + G A UCS 160106449 + 160106429 160106469 41 CACGGCTACTGGGAATCCGCCTCGACTGGGATGACCGGACC CACGGCTACTGGGAATCCGCCTCAACTGGGATGACCGGACC < 41bp 0.774942792431901 0.549937353292591 0.24829754 0.056877226 prediction 0.450010878278619 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160106449 chr1:160106452 nonsynonymous SNV 0.986 1 24 hm5C_associated_SNPs_78381 0 0 0 0 3 ATP1A2 chr1:160106411 3'AG 160106411 Downstream 42bp
chr1 160106452 160106452 1 + G A UCS 160106449 + 160106429 160106469 41 CACGGCTACTGGGAATCCGCCTCGACTGGGATGACCGGACC CACGGCTACTGGGAATCCGCCTCAACTGGGATGACCGGACC < 41bp 0.774942792431901 0.549937353292591 0.24829754 0.056877226 prediction 0.450010878278619 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160106449 chr1:160106452 nonsynonymous SNV 0.986 1 24 hm5C_associated_SNPs_78381 0 0 0 0 3 ATP1A2 chr1:160106505 5'GT 160106505 Upstream 54bp
chr1 12919639 12919639 1 + G A SKCM 12919636 + 12919616 12919656 41 CCTGGGCCCTGTCCTGCTTCCCAGAGGCCATGAGTAAGAGG CCTGGGCCCTGTCCTGCTTCCCAAAGGCCATGAGTAAGAGG < 41bp 0.725005364185971 0.47461172708511 0.3300201 0.14048806 prediction 0.450010728371941 Functional Loss - PRAMEF2 ENSG00000120952 CDS Human protein_coding chr1:12919636 chr1:12919639 nonsynonymous SNV 0.011 0 24 hm5C_associated_SNPs_78382 0 0 0 0 1 PRAMEF2 chr1:12919548 3'AG 12919548 Downstream 92bp
chr19 49671653 49671653 1 + G T LUAD 49671651 + 49671631 49671671 41 TGGCCCCCTGGGGTGTGGTCCGGAATAGAGACACCCTCATC TGGCCCCCTGGGGTGTGGTCCGTAATAGAGACACCCTCATC < 41bp 0.72500368255721 0.3743901050903 0.41109878 0.083572686 prediction 0.450007365114421 Functional Loss - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49671651 chr19:49671653 stopgain . 0 23 hm5C_associated_SNPs_78384 0 0 0 0 1 TRPM4 chr19:49671680 5'GT 49671680 Upstream 28bp
chr1 26801131 26801131 1 + A T LUSC 26801127 + 26801107 26801147 41 TGGCAAGGAGGGGAATAACCCTGCAGAAAATGGAGATGCCA TGGCAAGGAGGGGAATAACCCTGCTGAAAATGGAGATGCCA < 41bp 0.897065329555748 0.672061806422298 0.40023687 0.70007885 prediction 0.450007046266901 Functional Loss - HMGN2 ENSG00000198830 CDS Human protein_coding chr1:26801127 chr1:26801131 synonymous SNV . 0 25 hm5C_associated_SNPs_78385 0 0 1 0 2 HMGN2 chr1:26801063 3'AG 26801063 Downstream 69bp
chr1 26801131 26801131 1 + A T LUSC 26801127 + 26801107 26801147 41 TGGCAAGGAGGGGAATAACCCTGCAGAAAATGGAGATGCCA TGGCAAGGAGGGGAATAACCCTGCTGAAAATGGAGATGCCA < 41bp 0.897065329555748 0.672061806422298 0.40023687 0.70007885 prediction 0.450007046266901 Functional Loss - HMGN2 ENSG00000198830 CDS Human protein_coding chr1:26801127 chr1:26801131 synonymous SNV . 0 25 hm5C_associated_SNPs_78385 0 0 1 0 2 HMGN2 chr1:26801158 5'GT 26801158 Upstream 28bp
chr15 52497171 52497171 1 + G A UCEC 52497168 + 52497148 52497188 41 CTGCTTCACCGCCTGCCTCACAAGCTCGGGGTCCAGGCCGT CTGCTTCACCGCCTGCCTCACAAACTCGGGGTCCAGGCCGT < 41bp 0.724995246582975 0.480865814996642 0.0775567 0.06542596 prediction 0.449990493165949 Functional Loss - MYO5C ENSG00000128833 CDS Human protein_coding chr15:52497168 chr15:52497171 nonsynonymous SNV 0.582 2 24 hm5C_associated_SNPs_78390 0 0 0 0 1 MYO5C chr15:52497086 3'AG 52497086 Downstream 86bp
chr17 6927791 6927791 1 + C T SKCM 6927788 + 6927768 6927808 41 AACACCCCCAACGGCCCCTCCACCAGGTAGTCCCAGGCGCT AACACCCCCAACGGCCCCTCCACTAGGTAGTCCCAGGCGCT < 41bp 0.725035118772924 0.500048118391778 0.36771348 0.1402908 prediction 0.449974000762291 Functional Loss - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6927788 chr17:6927791 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_78394 0 0 0 0 1 BCL6B chr17:6927720 3'AG 6927720 Downstream 72bp
chr10 60562922 60562922 1 + G A COAD 60562919 + 60562899 60562939 41 AGAAGGCTCCAGGGAGTGAGCGCGCTGCAGAGAGGGCAGCA AGAAGGCTCCAGGGAGTGAGCGCACTGCAGAGAGGGCAGCA < 41bp 0.777497817823272 0.552519913901365 0.46522206 0.36541396 prediction 0.449955807843814 Functional Loss - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60562919 chr10:60562922 nonsynonymous SNV 0.982 4 24 hm5C_associated_SNPs_78397 0 0 1 0 2 BICC1 chr10:60562837 3'AG 60562837 Downstream 86bp
chr10 60562922 60562922 1 + G A COAD 60562919 + 60562899 60562939 41 AGAAGGCTCCAGGGAGTGAGCGCGCTGCAGAGAGGGCAGCA AGAAGGCTCCAGGGAGTGAGCGCACTGCAGAGAGGGCAGCA < 41bp 0.777497817823272 0.552519913901365 0.46522206 0.36541396 prediction 0.449955807843814 Functional Loss - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60562919 chr10:60562922 nonsynonymous SNV 0.982 4 24 hm5C_associated_SNPs_78397 0 0 1 0 2 BICC1 chr10:60563002 5'GT 60563002 Upstream 81bp
chr19 35655077 35655077 1 + C T HNSC 35655075 + 35655055 35655095 41 TCAGCTCATCCCACTGATGACACCACGACGCTCTCTGAGAG TCAGCTCATCCCACTGATGACATCACGACGCTCTCTGAGAG < 41bp 0.724971780127648 0.449967298006782 0.042939484 0.048955113 prediction 0.449943560255296 Functional Loss - FXYD5 ENSG00000089327 CDS Human protein_coding chr19:35655075 chr19:35655077 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_78400 0 0 1 0 2 FXYD5 chr19:35655059 3'AG 35655059 Downstream 19bp
chr19 35655077 35655077 1 + C T HNSC 35655075 + 35655055 35655095 41 TCAGCTCATCCCACTGATGACACCACGACGCTCTCTGAGAG TCAGCTCATCCCACTGATGACATCACGACGCTCTCTGAGAG < 41bp 0.724971780127648 0.449967298006782 0.042939484 0.048955113 prediction 0.449943560255296 Functional Loss - FXYD5 ENSG00000089327 CDS Human protein_coding chr19:35655075 chr19:35655077 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_78400 0 0 1 0 2 FXYD5 chr19:35655148 5'GT 35655148 Upstream 72bp
chr9 130868675 130868675 1 + C T BRCA 130868673 + 130868653 130868693 41 CTGCGGAAGACAGGCCAGTACTCAGGAATGCTGGACTGCGC CTGCGGAAGACAGGCCAGTACTTAGGAATGCTGGACTGCGC < 41bp 0.724970851670354 0.43786490571946 0.56323814 0.22120789 prediction 0.449941703340707 Functional Loss - SLC25A25 ENSG00000148339 CDS Human protein_coding chr9:130868673 chr9:130868675 nonsynonymous SNV 0.957 0 23 hm5C_associated_SNPs_78402 0 0 1 0 1 SLC25A25 chr9:130868632 3'AG 130868632 Downstream 44bp
chr12 57911098 57911098 1 - G A SKCM 57911101 - 57911081 57911121 41 GGACCTGCAAGAGGTCCTGTCTTCAGATGAAAATGGGGGTA GGACCTGCAAGAGGTCCTGTCTTTAGATGAAAATGGGGGTA < 41bp 0.738814791338458 0.51384617266014 0.37012377 0.12961456 prediction 0.449937237356637 Functional Loss - DDIT3 ENSG00000175197 CDS Human protein_coding chr12:57911101 chr12:57911098 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_78404 0 0 1 0 1 DDIT3 chr12:57911052 5'GT 57911052 Upstream 47bp
chr14 92790257 92790257 1 + C T COAD 92790255 + 92790235 92790275 41 CAGCAAGTCGGCTTCGTGTGCGCGGTGCTGGCCCTGGTGTG CAGCAAGTCGGCTTCGTGTGCGTGGTGCTGGCCCTGGTGTG < 41bp 0.758887597954039 0.533922065330984 0.8376379 0.8700316 prediction 0.449931065246109 Functional Loss - SLC24A4 ENSG00000140090 CDS Human protein_coding chr14:92790255 chr14:92790257 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_78406 0 0 0 0 1 SLC24A4 chr14:92790304 5'GT 92790304 Upstream 48bp
chr3 189597873 189597873 1 + G T UCEC 189597871 + 189597851 189597891 41 AGTCTCCTTTCAGCCTGCTTCAGGAATGAGCTTGTGGAGCC AGTCTCCTTTCAGCCTGCTTCATGAATGAGCTTGTGGAGCC < 41bp 0.72496071323054 0.403015751622137 0.69295037 0.07809493 prediction 0.449921426461081 Functional Loss - TP63 ENSG00000073282 CDS Human protein_coding chr3:189597871 chr3:189597873 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_78407 0 0 0 0 1 TP63 chr3:189597853 3'AG 189597853 Downstream 21bp
chr19 55045154 55045154 1 + T C ESCA 55045153 + 55045133 55045173 41 ACCCCAGAACACGCAGGGACCTACAGATGTGTTGGAATTTA ACCCCAGAACACGCAGGGACCCACAGATGTGTTGGAATTTA < 41bp 0.724954223997987 0.477777297302472 0.6684351 0.18093237 prediction 0.449908447995973 Functional Loss - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55045153 chr19:55045154 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_78409 0 0 0 0 1 KIR3DX1 chr19:55045229 5'GT 55045229 Upstream 76bp
chr19 3114975 3114975 1 + G A SKCM 3114972 + 3114952 3114992 41 GACGTTGACCGCATCGCCACCTTGGGCTACCTGCCCACCCA GACGTTGACCGCATCGCCACCTTAGGCTACCTGCCCACCCA < 41bp 0.724950903593388 0.477770762474999 0.53260726 0.16952014 prediction 0.449901807186776 Functional Loss - GNA11 ENSG00000088256 CDS Human protein_coding chr19:3114972 chr19:3114975 synonymous SNV . 0 24 hm5C_associated_SNPs_78411 0 0 1 0 2 GNA11 chr19:3114942 3'AG 3114942 Downstream 34bp
chr19 3114975 3114975 1 + G A SKCM 3114972 + 3114952 3114992 41 GACGTTGACCGCATCGCCACCTTGGGCTACCTGCCCACCCA GACGTTGACCGCATCGCCACCTTAGGCTACCTGCCCACCCA < 41bp 0.724950903593388 0.477770762474999 0.53260726 0.16952014 prediction 0.449901807186776 Functional Loss - GNA11 ENSG00000088256 CDS Human protein_coding chr19:3114972 chr19:3114975 synonymous SNV . 0 24 hm5C_associated_SNPs_78411 0 0 1 0 2 GNA11 chr19:3115070 5'GT 3115070 Upstream 96bp
chr5 145608539 145608539 1 + G A CESC 145608536 + 145608516 145608556 41 AGGAGCCAGCAGAGGAAGAACGAGATGGCAGAAAAAAGAAA AGGAGCCAGCAGAGGAAGAACGAAATGGCAGAAAAAAGAAA < 41bp 0.730378570029424 0.505431129513378 0.7471009 0.41304004 prediction 0.449894881032093 Functional Loss - RBM27 ENSG00000091009 CDS Human protein_coding chr5:145608536 chr5:145608539 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_78413 0 0 1 0 2 RBM27 chr5:145608509 3'AG 145608509 Downstream 31bp
chr5 145608539 145608539 1 + G A CESC 145608536 + 145608516 145608556 41 AGGAGCCAGCAGAGGAAGAACGAGATGGCAGAAAAAAGAAA AGGAGCCAGCAGAGGAAGAACGAAATGGCAGAAAAAAGAAA < 41bp 0.730378570029424 0.505431129513378 0.7471009 0.41304004 prediction 0.449894881032093 Functional Loss - RBM27 ENSG00000091009 CDS Human protein_coding chr5:145608536 chr5:145608539 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_78413 0 0 1 0 2 RBM27 chr5:145608600 5'GT 145608600 Upstream 62bp
chr2 228762991 228762991 1 + A C COAD 228762987 + 228762967 228763007 41 CCATACCTTCAGGGGTCATACAGCAGAAATAGTGAGTATAT CCATACCTTCAGGGGTCATACAGCCGAAATAGTGAGTATAT < 41bp 0.724939913976428 0.320201327166165 0.10525328 0.110719174 prediction 0.449879827952856 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228762987 chr2:228762991 synonymous SNV . 0 25 hm5C_associated_SNPs_78417 0 0 0 0 2 DAW1 chr2:228762898 3'AG 228762898 Downstream 94bp
chr2 228762991 228762991 1 + A C COAD 228762987 + 228762967 228763007 41 CCATACCTTCAGGGGTCATACAGCAGAAATAGTGAGTATAT CCATACCTTCAGGGGTCATACAGCCGAAATAGTGAGTATAT < 41bp 0.724939913976428 0.320201327166165 0.10525328 0.110719174 prediction 0.449879827952856 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228762987 chr2:228762991 synonymous SNV . 0 25 hm5C_associated_SNPs_78417 0 0 0 0 2 DAW1 chr2:228762997 5'GT 228762997 Upstream 7bp
chr19 1083181 1083181 1 + G A SARC 1083178 + 1083158 1083198 41 CAGGACAACAAGATGACCCCCGGGAACCTGGGCATCGTGTT CAGGACAACAAGATGACCCCCGGAAACCTGGGCATCGTGTT < 41bp 0.762292901417868 0.537353837947681 0.41809514 0.22378027 prediction 0.449878126940374 Functional Loss - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1083178 chr19:1083181 synonymous SNV . 0 24 hm5C_associated_SNPs_78419 0 0 0 0 1 ARHGAP45 chr19:1083142 3'AG 1083142 Downstream 40bp
chr16 1592029 1592029 1 + G A rs184706289 1592026 + 1592006 1592046 41 TGGGCCTGCCCCTGCTGTCACCCGACGCCCCGTGCTGGGAG TGGGCCTGCCCCTGCTGTCACCCAACGCCCCGTGCTGGGAG < 41bp 0.799803434943495 0.574871142580123 0.29683363 0.3813214 prediction 0.449864584726745 Functional Loss - TMEM204 ENSG00000131634 CDS Human protein_coding chr16:1592026 chr16:1592029 nonsynonymous SNV 0.007 2 24 hm5C_associated_SNPs_78422 0 0 0 0 1 TMEM204 chr16:1592077 5'GT 1592077 Upstream 49bp
chr1 231475598 231475598 1 + G T UCEC 231475595 + 231475575 231475615 41 ACCCCTTTTGAAGTTGAGGCCAAGAAAGGATCTTGTAGAGG ACCCCTTTTGAAGTTGAGGCCAATAAAGGATCTTGTAGAGG < 41bp 0.724928313643219 0.334501576881083 0.11707169 0.04827407 prediction 0.449856627286437 Functional Loss - SPRTN ENSG00000010072 CDS Human protein_coding chr1:231475595 chr1:231475598 nonsynonymous SNV 0.917 3 24 hm5C_associated_SNPs_78424 0 0 1 0 2 SPRTN chr1:231475515 3'AG 231475515 Downstream 84bp
chr1 231475598 231475598 1 + G T UCEC 231475595 + 231475575 231475615 41 ACCCCTTTTGAAGTTGAGGCCAAGAAAGGATCTTGTAGAGG ACCCCTTTTGAAGTTGAGGCCAATAAAGGATCTTGTAGAGG < 41bp 0.724928313643219 0.334501576881083 0.11707169 0.04827407 prediction 0.449856627286437 Functional Loss - SPRTN ENSG00000010072 CDS Human protein_coding chr1:231475595 chr1:231475598 nonsynonymous SNV 0.917 3 24 hm5C_associated_SNPs_78424 0 0 1 0 2 SPRTN chr1:231475614 5'GT 231475614 Upstream 17bp
chrX 36122779 36122779 1 + G T LUSC 36122776 + 36122756 36122796 41 GAACATAAATTATGAGAATACTCGACATGTGATATGGAAAA GAACATAAATTATGAGAATACTCTACATGTGATATGGAAAA < 41bp 0.724925145094606 0.368566656659899 0.20467108 0.3589729 prediction 0.449850290189213 Functional Loss - CFAP47 ENSG00000176034 CDS Human other chrX:36122776 chrX:36122779 nonsynonymous SNV 0.965 5 24 hm5C_associated_SNPs_78426 0 0 0 0 1 CFAP47 chrX:36122808 5'GT 36122808 Upstream 30bp
chr1 110257836 110257836 1 + T C rs61744262 110257835 + 110257815 110257855 41 TGCTTGGACGCCTTCCTAAACTTGAAGGACTTCATCTCCCG TGCTTGGACGCCTTCCTAAACCTGAAGGACTTCATCTCCCG < 41bp 0.724919746217869 0.475930523207385 0.14642128 0.08766717 prediction 0.449839492435739 Functional Loss - GSTM5 ENSG00000134201 CDS Human protein_coding chr1:110257835 chr1:110257836 synonymous SNV . 0 22 hm5C_associated_SNPs_78429 0 0 0 0 2 GSTM5 chr1:110257752 3'AG 110257752 Downstream 85bp
chr1 110257836 110257836 1 + T C rs61744262 110257835 + 110257815 110257855 41 TGCTTGGACGCCTTCCTAAACTTGAAGGACTTCATCTCCCG TGCTTGGACGCCTTCCTAAACCTGAAGGACTTCATCTCCCG < 41bp 0.724919746217869 0.475930523207385 0.14642128 0.08766717 prediction 0.449839492435739 Functional Loss - GSTM5 ENSG00000134201 CDS Human protein_coding chr1:110257835 chr1:110257836 synonymous SNV . 0 22 hm5C_associated_SNPs_78429 0 0 0 0 2 GSTM5 chr1:110257862 5'GT 110257862 Upstream 27bp
chr12 104337594 104337594 1 + A C LUSC 104337593 + 104337573 104337613 41 AGCCAGTACGGATGGTCTGGCAACATGGAGAGAATCATGAA AGCCAGTACGGATGGTCTGGCCACATGGAGAGAATCATGAA < 41bp 0.724917517663908 0.470333982606141 0.46485555 0.64031935 prediction 0.449835035327816 Functional Loss - HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104337593 chr12:104337594 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_78430 0 0 1 0 2 HSP90B1 chr12:104337516 3'AG 104337516 Downstream 79bp
chr12 104337594 104337594 1 + A C LUSC 104337593 + 104337573 104337613 41 AGCCAGTACGGATGGTCTGGCAACATGGAGAGAATCATGAA AGCCAGTACGGATGGTCTGGCCACATGGAGAGAATCATGAA < 41bp 0.724917517663908 0.470333982606141 0.46485555 0.64031935 prediction 0.449835035327816 Functional Loss - HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104337593 chr12:104337594 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_78430 0 0 1 0 2 HSP90B1 chr12:104337652 5'GT 104337652 Upstream 59bp
chr3 43388884 43388884 1 + C T STAD 43388882 + 43388862 43388902 41 CAGGACCTTGAGGATGACCTCACGGCCACTCCTTTGTCCCA CAGGACCTTGAGGATGACCTCATGGCCACTCCTTTGTCCCA < 41bp 0.724914684116834 0.45280787496348 0.3621781 0.14795384 prediction 0.449829368233667 Functional Loss - SNRK ENSG00000163788 CDS Human protein_coding chr3:43388882 chr3:43388884 nonsynonymous SNV 0.499 3 23 hm5C_associated_SNPs_78432 0 0 0 0 1 SNRK chr3:43388831 3'AG 43388831 Downstream 54bp
chr3 43388885 43388885 1 + G A UCEC 43388882 + 43388862 43388902 41 CAGGACCTTGAGGATGACCTCACGGCCACTCCTTTGTCCCA CAGGACCTTGAGGATGACCTCACAGCCACTCCTTTGTCCCA < 41bp 0.724914684116834 0.483970558855448 0.3621781 0.17416611 prediction 0.449829368233667 Functional Loss - SNRK ENSG00000163788 CDS Human protein_coding chr3:43388882 chr3:43388885 synonymous SNV . 0 24 hm5C_associated_SNPs_78433 0 0 0 0 1 SNRK chr3:43388831 3'AG 43388831 Downstream 55bp
chr7 129767252 129767252 1 + G T LUSC 129767250 + 129767230 129767270 41 TGTGTGTTTGGCAGGCTTTCCTGCAGCCCGAAGGTGTCACA TGTGTGTTTGGCAGGCTTTCCTTCAGCCCGAAGGTGTCACA < 41bp 0.724914104231337 0.386129623875646 0.47684535 0.122335285 prediction 0.449828208462675 Functional Loss - KLHDC10 ENSG00000128607 CDS Human protein_coding chr7:129767250 chr7:129767252 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_78434 0 0 1 0 2 KLHDC10 chr7:129767244 3'AG 129767244 Downstream 9bp
chr7 129767252 129767252 1 + G T LUSC 129767250 + 129767230 129767270 41 TGTGTGTTTGGCAGGCTTTCCTGCAGCCCGAAGGTGTCACA TGTGTGTTTGGCAGGCTTTCCTTCAGCCCGAAGGTGTCACA < 41bp 0.724914104231337 0.386129623875646 0.47684535 0.122335285 prediction 0.449828208462675 Functional Loss - KLHDC10 ENSG00000128607 CDS Human protein_coding chr7:129767250 chr7:129767252 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_78434 0 0 1 0 2 KLHDC10 chr7:129767291 5'GT 129767291 Upstream 40bp
chr20 4162551 4162551 1 + C T BLCA 4162549 + 4162529 4162569 41 CCCGAGAGGAGGTGCGTAACCGCATCAGGAATGACCCTGAC CCCGAGAGGAGGTGCGTAACCGTATCAGGAATGACCCTGAC < 41bp 0.724911585234164 0.453118770687915 0.35992438 0.27358285 prediction 0.449823170468329 Functional Loss - SMOX ENSG00000088826 CDS Human protein_coding chr20:4162549 chr20:4162551 synonymous SNV . 0 23 hm5C_associated_SNPs_78436 0 0 0 0 1 SMOX chr20:4162623 5'GT 4162623 Upstream 73bp
chr19 48945130 48945130 1 + C T LGG 48945128 + 48945108 48945148 41 GGCTCCGGCAAGGTCTTCGCCACGACAGGCTATGGCATCGC GGCTCCGGCAAGGTCTTCGCCATGACAGGCTATGGCATCGC < 41bp 0.832390481491115 0.60747916535926 0.073880225 0.06415865 prediction 0.449822632263709 Functional Loss - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48945128 chr19:48945130 nonsynonymous SNV 0.992 3 23 hm5C_associated_SNPs_78437 0 0 0 0 1 GRIN2D chr19:48945213 5'GT 48945213 Upstream 84bp
chrX 15548116 15548116 1 + C T HNSC 15548114 + 15548094 15548134 41 AGCTGGTTTGCTGGTAACATCTCCAGATCACAATCTGAACA AGCTGGTTTGCTGGTAACATCTTCAGATCACAATCTGAACA < 41bp 0.724909093018504 0.417709003155744 0.9387989 0.12733856 prediction 0.449818186037007 Functional Loss - BMX ENSG00000102010 CDS Human protein_coding chrX:15548114 chrX:15548116 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_78440 0 0 0 0 2 BMX chrX:15548096 3'AG 15548096 Downstream 21bp
chrX 15548116 15548116 1 + C T HNSC 15548114 + 15548094 15548134 41 AGCTGGTTTGCTGGTAACATCTCCAGATCACAATCTGAACA AGCTGGTTTGCTGGTAACATCTTCAGATCACAATCTGAACA < 41bp 0.724909093018504 0.417709003155744 0.9387989 0.12733856 prediction 0.449818186037007 Functional Loss - BMX ENSG00000102010 CDS Human protein_coding chrX:15548114 chrX:15548116 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_78440 0 0 0 0 2 BMX chrX:15548150 5'GT 15548150 Upstream 35bp
chr5 149006760 149006760 1 + G A UCEC 149006757 + 149006737 149006777 41 GACTCTGGACCTGACTCTGCCTCGGGGCCAAATCGTGGCCA GACTCTGGACCTGACTCTGCCTCAGGGCCAAATCGTGGCCA < 41bp 0.776951282916786 0.552044546646011 0.38211724 0.21184811 prediction 0.44981347254155 Functional Loss - ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:149006757 chr5:149006760 nonsynonymous SNV 0.741 4 24 hm5C_associated_SNPs_78442 0 0 0 0 1 ARHGEF37 chr5:149006834 5'GT 149006834 Upstream 75bp
chr9 96323466 96323466 1 + G T LUAD 96323464 + 96323444 96323484 41 GTTGGCCATTGGGCTGGGAGCAGGCGGGGCCGTGGGGGCCG GTTGGCCATTGGGCTGGGAGCATGCGGGGCCGTGGGGGCCG < 41bp 0.906981841528834 0.682076288124266 0.91380644 0.8942498 prediction 0.449811106809137 Functional Loss - FAM120A ENSG00000048828 CDS Human protein_coding chr9:96323464 chr9:96323466 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_78443 0 0 1 0 1 FAM120A chr9:96323391 3'AG 96323391 Downstream 76bp
chr11 73662142 73662142 1 + G A STAD 73662139 + 73662119 73662159 41 GCCAGGATTATTACTCTGTGCTCGGGATCACTCGCAATTCA GCCAGGATTATTACTCTGTGCTCAGGATCACTCGCAATTCA < 41bp 0.774888660857602 0.549983669107253 0.08750254 0.027543217 prediction 0.449809983500698 Functional Loss - DNAJB13 ENSG00000187726 CDS Human protein_coding chr11:73662139 chr11:73662142 nonsynonymous SNV 0.734 1 24 hm5C_associated_SNPs_78444 0 0 0 0 1 DNAJB13 chr11:73662182 5'GT 73662182 Upstream 41bp
chr6 50683246 50683246 1 + C T BLCA 50683244 + 50683224 50683264 41 GTCCCTCATGAGCCATGGCTCTCAGTATGGAATGCACCCAG GTCCCTCATGAGCCATGGCTCTTAGTATGGAATGCACCCAG < 41bp 0.823160775541078 0.598262177600036 0.044124037 0.08474329 prediction 0.449797195882084 Functional Loss - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50683244 chr6:50683246 stopgain 1.000 0 23 hm5C_associated_SNPs_78447 0 0 0 0 1 TFAP2D chr6:50683326 5'GT 50683326 Upstream 81bp
chr12 119926663 119926663 1 + G A UCEC 119926660 + 119926640 119926680 41 ATGAAGCCTGTGATCACCTGCTGGAACCCAAAGTATGCCTC ATGAAGCCTGTGATCACCTGCTGAAACCCAAAGTATGCCTC < 41bp 0.768191446156928 0.543296299326553 0.050165325 0.020534039 prediction 0.44979029366075 Functional Loss - CCDC60 ENSG00000183273 CDS Human protein_coding chr12:119926660 chr12:119926663 stopgain 0.961 1 24 hm5C_associated_SNPs_78449 0 0 0 0 2 CCDC60 chr12:119926564 3'AG 119926564 Downstream 100bp
chr12 119926663 119926663 1 + G A UCEC 119926660 + 119926640 119926680 41 ATGAAGCCTGTGATCACCTGCTGGAACCCAAAGTATGCCTC ATGAAGCCTGTGATCACCTGCTGAAACCCAAAGTATGCCTC < 41bp 0.768191446156928 0.543296299326553 0.050165325 0.020534039 prediction 0.44979029366075 Functional Loss - CCDC60 ENSG00000183273 CDS Human protein_coding chr12:119926660 chr12:119926663 stopgain 0.961 1 24 hm5C_associated_SNPs_78449 0 0 0 0 2 CCDC60 chr12:119926671 5'GT 119926671 Upstream 9bp
chr7 134221859 134221859 1 + G A rs376395703 134221856 + 134221836 134221876 41 CTGATCCAGTACTGCCACTCCAAGGGCATCACCGTTACGGC CTGATCCAGTACTGCCACTCCAAAGGCATCACCGTTACGGC < 41bp 0.794643987499561 0.569750164023515 0.9249395 0.33644873 prediction 0.449787646952093 Functional Loss - AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134221856 chr7:134221859 synonymous SNV . 0 24 hm5C_associated_SNPs_78450 0 0 0 0 2 AKR1B10 chr7:134221803 3'AG 134221803 Downstream 57bp
chr7 134221859 134221859 1 + G A rs376395703 134221856 + 134221836 134221876 41 CTGATCCAGTACTGCCACTCCAAGGGCATCACCGTTACGGC CTGATCCAGTACTGCCACTCCAAAGGCATCACCGTTACGGC < 41bp 0.794643987499561 0.569750164023515 0.9249395 0.33644873 prediction 0.449787646952093 Functional Loss - AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134221856 chr7:134221859 synonymous SNV . 0 24 hm5C_associated_SNPs_78450 0 0 0 0 2 AKR1B10 chr7:134221909 5'GT 134221909 Upstream 51bp
chr7 134260187 134260187 1 + G A LUSC 134260184 + 134260164 134260204 41 TATGATAGGCCATGGAGGAGCTGGTGGACGAGGGGCTGGTG TATGATAGGCCATGGAGGAGCTGATGGACGAGGGGCTGGTG < 41bp 0.72489249419847 0.492399495924239 0.32932597 0.39563453 prediction 0.44978498839694 Functional Loss - AKR1B15 ENSG00000227471 CDS Human protein_coding chr7:134260184 chr7:134260187 nonsynonymous SNV 0.986 3 24 hm5C_associated_SNPs_78452 0 0 0 0 1 AKR1B15 chr7:134260172 3'AG 134260172 Downstream 16bp
chr7 89856300 89856300 1 + A T UCEC 89856296 + 89856276 89856316 41 TTTCCACAGGTTTATATATGCAGCAACAATATTCAAGCGCG TTTCCACAGGTTTATATATGCAGCTACAATATTCAAGCGCG < 41bp 0.724888940586679 0.412016339049707 0.14531234 0.19665992 prediction 0.449777881173357 Functional Loss - STEAP2 ENSG00000157214 CDS Human protein_coding chr7:89856296 chr7:89856300 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_78454 0 0 1 0 1 STEAP2 chr7:89856285 3'AG 89856285 Downstream 16bp
chrX 65414978 65414978 1 + G A BLCA 65414975 + 65414955 65414995 41 CTGAGGTGGGTGACACCATTCAGGTGGTCTTCTACAACCGT CTGAGGTGGGTGACACCATTCAGATGGTCTTCTACAACCGT < 41bp 0.724887392364779 0.474530788317644 0.5613872 0.38038695 prediction 0.449774784729557 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65414975 chrX:65414978 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_78455 0 0 1 0 2 HEPH chrX:65414940 3'AG 65414940 Downstream 39bp
chrX 65414978 65414978 1 + G A BLCA 65414975 + 65414955 65414995 41 CTGAGGTGGGTGACACCATTCAGGTGGTCTTCTACAACCGT CTGAGGTGGGTGACACCATTCAGATGGTCTTCTACAACCGT < 41bp 0.724887392364779 0.474530788317644 0.5613872 0.38038695 prediction 0.449774784729557 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65414975 chrX:65414978 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_78455 0 0 1 0 2 HEPH chrX:65415071 5'GT 65415071 Upstream 94bp
chr7 142494277 142494277 1 - C T SKCM 142494280 - 142494260 142494300 41 CCTTACCCAGTACGGTCAGCCTAGAGCCTTCTCCAAAAAAC CCTTACCCAGTACGGTCAGCCTAAAGCCTTCTCCAAAAAAC < 41bp 0.746922161319494 0.522035942235165 0.01766175 0.018947124 prediction 0.449772438168657 Functional Loss - PRSS3P2;EPHB6 ENSG00000211765 CDS Human TR_J_gene chr7:142494280 chr7:142494277 unknown . 0 24 hm5C_associated_SNPs_78456 0 0 0 0 1 PRSS3P2;EPHB6 chr7:142494249 5'GT 142494249 Upstream 29bp
chr1 39988140 39988140 1 + G A SKCM 39988137 + 39988117 39988157 41 ACGAGCTCTACGTCAGCTTCCAGGACCTTGGCTGGCTGGTA ACGAGCTCTACGTCAGCTTCCAGAACCTTGGCTGGCTGGTA < 41bp 0.774594837175359 0.549714907383942 0.864895 0.6975969 prediction 0.449759859582832 Functional Loss - BMP8A ENSG00000183682 CDS Human protein_coding chr1:39988137 chr1:39988140 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_78459 0 0 0 0 2 BMP8A chr1:39988075 3'AG 39988075 Downstream 66bp
chr1 39988140 39988140 1 + G A SKCM 39988137 + 39988117 39988157 41 ACGAGCTCTACGTCAGCTTCCAGGACCTTGGCTGGCTGGTA ACGAGCTCTACGTCAGCTTCCAGAACCTTGGCTGGCTGGTA < 41bp 0.774594837175359 0.549714907383942 0.864895 0.6975969 prediction 0.449759859582832 Functional Loss - BMP8A ENSG00000183682 CDS Human protein_coding chr1:39988137 chr1:39988140 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_78459 0 0 0 0 2 BMP8A chr1:39988154 5'GT 39988154 Upstream 15bp
chr15 65931952 65931952 1 + G A CESC 65931949 + 65931929 65931969 41 TCAGCTCCCGTCCTTGCTGACCCGAGGGAGCAGCTCGACCT TCAGCTCCCGTCCTTGCTGACCCAAGGGAGCAGCTCGACCT < 41bp 0.767478706154141 0.542605317059009 0.35911405 0.3394214 prediction 0.449746778190264 Functional Loss - SLC24A1 ENSG00000074621 CDS Human protein_coding chr15:65931949 chr15:65931952 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_78462 0 0 0 0 2 SLC24A1 chr15:65931933 3'AG 65931933 Downstream 20bp
chr15 65931952 65931952 1 + G A CESC 65931949 + 65931929 65931969 41 TCAGCTCCCGTCCTTGCTGACCCGAGGGAGCAGCTCGACCT TCAGCTCCCGTCCTTGCTGACCCAAGGGAGCAGCTCGACCT < 41bp 0.767478706154141 0.542605317059009 0.35911405 0.3394214 prediction 0.449746778190264 Functional Loss - SLC24A1 ENSG00000074621 CDS Human protein_coding chr15:65931949 chr15:65931952 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_78462 0 0 0 0 2 SLC24A1 chr15:65932041 5'GT 65932041 Upstream 90bp
chr19 50305812 50305812 1 + C T COAD 50305810 + 50305790 50305830 41 GCGAGCTGGAGCCGCCTGCCCCCGAGAGCCCCATGGCTTTG GCGAGCTGGAGCCGCCTGCCCCTGAGAGCCCCATGGCTTTG < 41bp 0.835947899988343 0.611074703989856 0.44248718 0.30241585 prediction 0.449746391996975 Functional Loss - AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50305810 chr19:50305812 synonymous SNV . 0 23 hm5C_associated_SNPs_78463 0 0 0 0 2 AP2A1 chr19:50305791 3'AG 50305791 Downstream 22bp
chr19 50305812 50305812 1 + C T COAD 50305810 + 50305790 50305830 41 GCGAGCTGGAGCCGCCTGCCCCCGAGAGCCCCATGGCTTTG GCGAGCTGGAGCCGCCTGCCCCTGAGAGCCCCATGGCTTTG < 41bp 0.835947899988343 0.611074703989856 0.44248718 0.30241585 prediction 0.449746391996975 Functional Loss - AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50305810 chr19:50305812 synonymous SNV . 0 23 hm5C_associated_SNPs_78463 0 0 0 0 2 AP2A1 chr19:50305856 5'GT 50305856 Upstream 45bp
chr19 1924168 1924168 1 + C T rs200769074 1924166 + 1924146 1924186 41 AAGGCACAGACGGAGTGGAACACGGGCACTTGGCGGAACCC AAGGCACAGACGGAGTGGAACATGGGCACTTGGCGGAACCC < 41bp 0.790671086175931 0.565800185051634 0.31688738 0.16529855 prediction 0.449741802248594 Functional Loss - SCAMP4 ENSG00000227500 CDS Human protein_coding chr19:1924166 chr19:1924168 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_78465 0 0 1 0 1 SCAMP4 chr19:1924107 3'AG 1924107 Downstream 62bp
chr19 52786596 52786596 1 + G A UCEC 52786593 + 52786573 52786613 41 ATGAAGCAAAGGACAGAGCCCTGGACTGTGGAGAATGAAAT ATGAAGCAAAGGACAGAGCCCTGAACTGTGGAGAATGAAAT < 41bp 0.731317799645727 0.506448085690931 0.03144729 0.023276716 prediction 0.449739427909593 Functional Loss - ZNF766 ENSG00000196214 CDS Human protein_coding chr19:52786593 chr19:52786596 stopgain 0.648 0 24 hm5C_associated_SNPs_78466 0 0 1 0 2 ZNF766 chr19:52786538 3'AG 52786538 Downstream 59bp
chr19 52786596 52786596 1 + G A UCEC 52786593 + 52786573 52786613 41 ATGAAGCAAAGGACAGAGCCCTGGACTGTGGAGAATGAAAT ATGAAGCAAAGGACAGAGCCCTGAACTGTGGAGAATGAAAT < 41bp 0.731317799645727 0.506448085690931 0.03144729 0.023276716 prediction 0.449739427909593 Functional Loss - ZNF766 ENSG00000196214 CDS Human protein_coding chr19:52786593 chr19:52786596 stopgain 0.648 0 24 hm5C_associated_SNPs_78466 0 0 1 0 2 ZNF766 chr19:52786666 5'GT 52786666 Upstream 71bp
chr12 113624538 113624538 1 + G T UCEC 113624535 + 113624515 113624555 41 CAGAGCACACCTGCTGTCACCAGGGACCACAGGCAGCATGA CAGAGCACACCTGCTGTCACCAGTGACCACAGGCAGCATGA < 41bp 0.847174922573986 0.622308181929236 0.9232259 0.2879997 prediction 0.4497334812895 Functional Loss - RITA1 ENSG00000139405 CDS Human protein_coding chr12:113624535 chr12:113624538 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_78469 0 0 0 0 1 RITA1 chr12:113624488 3'AG 113624488 Downstream 51bp
chr11 32615446 32615446 1 + G A GBM 32615443 + 32615423 32615463 41 CAAAAGTCATGGTGGAATTGCTCGGAAGTTACACAGAGGAC CAAAAGTCATGGTGGAATTGCTCAGAAGTTACACAGAGGAC < 41bp 0.77888245377895 0.5540171780558 0.090634525 0.04457584 prediction 0.4497305514463 Functional Loss - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32615443 chr11:32615446 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_78472 0 0 1 0 2 EIF3M chr11:32615412 3'AG 32615412 Downstream 35bp
chr11 32615446 32615446 1 + G A GBM 32615443 + 32615423 32615463 41 CAAAAGTCATGGTGGAATTGCTCGGAAGTTACACAGAGGAC CAAAAGTCATGGTGGAATTGCTCAGAAGTTACACAGAGGAC < 41bp 0.77888245377895 0.5540171780558 0.090634525 0.04457584 prediction 0.4497305514463 Functional Loss - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32615443 chr11:32615446 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_78472 0 0 1 0 2 EIF3M chr11:32615495 5'GT 32615495 Upstream 50bp
chr11 70007464 70007464 1 + G T LUSC 70007461 + 70007441 70007481 41 TGCATAGCCCGATGGCTCACCAAGATCGGTGAGTGCCCATG TGCATAGCCCGATGGCTCACCAATATCGGTGAGTGCCCATG < 41bp 0.724858152305965 0.325643669160905 0.6544557 0.079470634 prediction 0.449716304611929 Functional Loss - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70007461 chr11:70007464 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_78477 0 0 0 0 1 ANO1 chr11:70007468 5'GT 70007468 Upstream 5bp
chr10 99510205 99510205 1 + C T COAD 99510203 + 99510183 99510223 41 AAGGATGGTCTGATGGACAGCACGCCTGCCCTCACACCCAC AAGGATGGTCTGATGGACAGCATGCCTGCCCTCACACCCAC < 41bp 0.724849636676517 0.483777693562611 0.20177162 0.1809695 prediction 0.449699273353035 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99510203 chr10:99510205 nonsynonymous SNV 0.476 4 23 hm5C_associated_SNPs_78481 0 0 1 0 1 ZFYVE27 chr10:99510227 5'GT 99510227 Upstream 23bp
chr10 99510206 99510206 1 + G A UCEC 99510203 + 99510183 99510223 41 AAGGATGGTCTGATGGACAGCACGCCTGCCCTCACACCCAC AAGGATGGTCTGATGGACAGCACACCTGCCCTCACACCCAC < 41bp 0.724849636676517 0.486612968456536 0.20177162 0.17895475 prediction 0.449699273353035 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99510203 chr10:99510206 synonymous SNV . 0 24 hm5C_associated_SNPs_78482 0 0 1 0 1 ZFYVE27 chr10:99510227 5'GT 99510227 Upstream 22bp
chr16 19194919 19194919 1 + C T GBM 19194917 + 19194897 19194937 41 ATCGAGTTTGGCGTTCTCAGCGCCAAGAAGGAGCCCATCCA ATCGAGTTTGGCGTTCTCAGCGTCAAGAAGGAGCCCATCCA < 41bp 0.851245122418421 0.62639565855191 0.11905405 0.12963092 prediction 0.449698927733022 Functional Loss - SYT17 ENSG00000103528 CDS Human protein_coding chr16:19194917 chr16:19194919 nonsynonymous SNV 0.953 2 23 hm5C_associated_SNPs_78483 0 0 0 0 1 SYT17 chr16:19194850 3'AG 19194850 Downstream 70bp
chr16 28911961 28911961 1 + G A LUSC 28911958 + 28911938 28911978 41 GACCCTCCGCGCAAGGAGGTCACGGGCTCCATCCAGCTGTG GACCCTCCGCGCAAGGAGGTCACAGGCTCCATCCAGCTGTG < 41bp 0.797104442762797 0.572260786822812 0.39467517 0.23648378 prediction 0.44968731187997 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28911958 chr16:28911961 synonymous SNV . 0 24 hm5C_associated_SNPs_78486 0 0 1 0 1 ATP2A1 chr16:28911902 3'AG 28911902 Downstream 60bp
chr20 57598005 57598005 1 + T C UCEC 57598004 + 57597984 57598024 41 AGCGTGTACTACAACGAAGCCTACGGTAGGACTGGCGGGGC AGCGTGTACTACAACGAAGCCCACGGTAGGACTGGCGGGGC < 41bp 0.800308294231874 0.575467277872318 0.35003245 0.44719154 prediction 0.449682032719111 Functional Loss - TUBB1 ENSG00000101162 CDS Human protein_coding chr20:57598004 chr20:57598005 nonsynonymous SNV 0.931 0 22 hm5C_associated_SNPs_78488 0 0 1 0 1 TUBB1 chr20:57598008 5'GT 57598008 Upstream 4bp
chr10 6263397 6263397 1 + C T UCEC 6263395 + 6263375 6263415 41 AGCAGAACCTGAAGGACCTGCGCGTGTGGACCAGCCAGCTG AGCAGAACCTGAAGGACCTGCGTGTGTGGACCAGCCAGCTG < 41bp 0.724840101753525 0.460324231880781 0.42211744 0.38071632 prediction 0.449680203507051 Functional Loss - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6263395 chr10:6263397 synonymous SNV . 0 23 hm5C_associated_SNPs_78489 0 0 1 0 2 PFKFB3 chr10:6263344 3'AG 6263344 Downstream 54bp
chr10 6263397 6263397 1 + C T UCEC 6263395 + 6263375 6263415 41 AGCAGAACCTGAAGGACCTGCGCGTGTGGACCAGCCAGCTG AGCAGAACCTGAAGGACCTGCGTGTGTGGACCAGCCAGCTG < 41bp 0.724840101753525 0.460324231880781 0.42211744 0.38071632 prediction 0.449680203507051 Functional Loss - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6263395 chr10:6263397 synonymous SNV . 0 23 hm5C_associated_SNPs_78489 0 0 1 0 2 PFKFB3 chr10:6263490 5'GT 6263490 Upstream 94bp
chr2 108910767 108910767 1 + C T CESC 108910765 + 108910745 108910785 41 GCCAGCGAGCCATCATCCAACACCGCCATCCTTTCATTGAG GCCAGCGAGCCATCATCCAACATCGCCATCCTTTCATTGAG < 41bp 0.724839343168824 0.455324035979564 0.046428174 0.06138721 prediction 0.449678686337647 Functional Loss - SULT1C2 ENSG00000198203 CDS Human protein_coding chr2:108910765 chr2:108910767 synonymous SNV . 0 23 hm5C_associated_SNPs_78490 0 0 0 0 2 SULT1C2 chr2:108910685 3'AG 108910685 Downstream 83bp
chr2 108910767 108910767 1 + C T CESC 108910765 + 108910745 108910785 41 GCCAGCGAGCCATCATCCAACACCGCCATCCTTTCATTGAG GCCAGCGAGCCATCATCCAACATCGCCATCCTTTCATTGAG < 41bp 0.724839343168824 0.455324035979564 0.046428174 0.06138721 prediction 0.449678686337647 Functional Loss - SULT1C2 ENSG00000198203 CDS Human protein_coding chr2:108910765 chr2:108910767 synonymous SNV . 0 23 hm5C_associated_SNPs_78490 0 0 0 0 2 SULT1C2 chr2:108910810 5'GT 108910810 Upstream 44bp
chr7 100189369 100189369 1 + C T UCEC 100189367 + 100189347 100189387 41 GCGTGGCCCCCTTGCTAGCCCACGGCTACCGCCGCTTCTTG GCGTGGCCCCCTTGCTAGCCCATGGCTACCGCCGCTTCTTG < 41bp 0.823020471174168 0.598184319200168 0.15389216 0.1730591 prediction 0.449672303948001 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100189367 chr7:100189369 synonymous SNV . 0 23 hm5C_associated_SNPs_78495 0 0 0 0 1 FBXO24 chr7:100189290 3'AG 100189290 Downstream 80bp
chr7 98935908 98935908 1 + G T UCEC 98935906 + 98935886 98935926 41 GGAGCACAACGGACACATCACAGGTAAAGGAAGATAGCCGT GGAGCACAACGGACACATCACATGTAAAGGAAGATAGCCGT < 41bp 0.724833238989106 0.370996596456986 0.40902072 0.05013439 prediction 0.449666477978213 Functional Loss - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98935906 chr7:98935908 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_78496 0 0 0 2 1 ARPC1A chr7:98935908 5'GT 98935908 Upstream 1bp
chr2 185798363 185798363 1 + C T COAD 185798361 + 185798341 185798381 41 ACTGAAACAAAGGGAATTTGCTCGAAATGTAGCATCTAAAT ACTGAAACAAAGGGAATTTGCTTGAAATGTAGCATCTAAAT < 41bp 0.72483242341798 0.438137196850728 0.44578448 0.09690887 prediction 0.44966484683596 Functional Loss - ZNF804A ENSG00000170396 CDS Human protein_coding chr2:185798361 chr2:185798363 stopgain 1.000 1 23 hm5C_associated_SNPs_78497 0 0 0 0 2 ZNF804A chr2:185798330 3'AG 185798330 Downstream 34bp
chr2 185798363 185798363 1 + C T COAD 185798361 + 185798341 185798381 41 ACTGAAACAAAGGGAATTTGCTCGAAATGTAGCATCTAAAT ACTGAAACAAAGGGAATTTGCTTGAAATGTAGCATCTAAAT < 41bp 0.72483242341798 0.438137196850728 0.44578448 0.09690887 prediction 0.44966484683596 Functional Loss - ZNF804A ENSG00000170396 CDS Human protein_coding chr2:185798361 chr2:185798363 stopgain 1.000 1 23 hm5C_associated_SNPs_78497 0 0 0 0 2 ZNF804A chr2:185798460 5'GT 185798460 Upstream 98bp
chr22 37329941 37329941 1 + G T LUAD 37329939 + 37329919 37329959 41 CCAGCCCTGGAGCCCTCCACCAGGTACTGGGCCAGGGTGAG CCAGCCCTGGAGCCCTCCACCATGTACTGGGCCAGGGTGAG < 41bp 0.724828861672432 0.354476551003517 0.951902 0.82915246 prediction 0.449657723344863 Functional Loss - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37329939 chr22:37329941 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_78499 0 0 0 0 2 CSF2RB chr22:37329874 3'AG 37329874 Downstream 68bp
chr22 37329941 37329941 1 + G T LUAD 37329939 + 37329919 37329959 41 CCAGCCCTGGAGCCCTCCACCAGGTACTGGGCCAGGGTGAG CCAGCCCTGGAGCCCTCCACCATGTACTGGGCCAGGGTGAG < 41bp 0.724828861672432 0.354476551003517 0.951902 0.82915246 prediction 0.449657723344863 Functional Loss - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37329939 chr22:37329941 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_78499 0 0 0 0 2 CSF2RB chr22:37330036 5'GT 37330036 Upstream 96bp
chr11 94340776 94340776 1 + G A COAD 94340773 + 94340753 94340793 41 CTATGCAGATGACTTGCAAGCTCGGAGGCGAGCTGTGGGCT CTATGCAGATGACTTGCAAGCTCAGAGGCGAGCTGTGGGCT < 41bp 0.78724759689909 0.562421655998273 0.6599507 0.3320529 prediction 0.449651881801633 Functional Loss - PIWIL4 ENSG00000134627 CDS Human protein_coding chr11:94340773 chr11:94340776 nonsynonymous SNV 0.745 3 24 hm5C_associated_SNPs_78500 0 0 0 0 1 PIWIL4 chr11:94340805 5'GT 94340805 Upstream 30bp
chr3 52828887 52828887 1 + C T rs528961799 52828885 + 52828865 52828905 41 AGCTTGGCAGCCTCTGGCTTCCCGAGAAGCCCCTTTCGGCT AGCTTGGCAGCCTCTGGCTTCCTGAGAAGCCCCTTTCGGCT < 41bp 0.724824869273691 0.485361347421893 0.31102622 0.42265633 prediction 0.449649738547383 Functional Loss - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52828885 chr3:52828887 nonsynonymous SNV 0.143 0 23 hm5C_associated_SNPs_78502 0 0 1 0 1 ITIH3 chr3:52828912 5'GT 52828912 Upstream 26bp
chr12 10339039 10339039 1 + C T READ 10339037 + 10339017 10339057 41 AGGTTGCTAGTGGTAATTGGCGCGCTGCTTCTCCTGTGTGG AGGTTGCTAGTGGTAATTGGCGTGCTGCTTCTCCTGTGTGG < 41bp 0.816479674309371 0.591656920198569 0.35160547 0.4680079 prediction 0.449645508221604 Functional Loss - TMEM52B ENSG00000165685 CDS Human protein_coding chr12:10339037 chr12:10339039 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_78504 0 0 1 0 1 TMEM52B chr12:10339019 3'AG 10339019 Downstream 21bp
chr2 71299832 71299832 1 + C T LUAD 71299829 + 71299809 71299849 41 AGGCTCATCAACCCTGATGGCTCCGAGAGTGGCTGCGGCGG AGGCTCATCAACCCTGATGGCTCTGAGAGTGGCTGCGGCGG < 41bp 0.727131857997807 0.5023144045574 0.3213134 0.19815686 prediction 0.449634906880816 Functional Loss - NAGK ENSG00000124357 CDS Human protein_coding chr2:71299829 chr2:71299832 synonymous SNV . 0 24 hm5C_associated_SNPs_78508 0 0 1 0 3 NAGK chr2:71299771 3'AG 71299771 Downstream 62bp
chr2 71299832 71299832 1 + C T LUAD 71299829 + 71299809 71299849 41 AGGCTCATCAACCCTGATGGCTCCGAGAGTGGCTGCGGCGG AGGCTCATCAACCCTGATGGCTCTGAGAGTGGCTGCGGCGG < 41bp 0.727131857997807 0.5023144045574 0.3213134 0.19815686 prediction 0.449634906880816 Functional Loss - NAGK ENSG00000124357 CDS Human protein_coding chr2:71299829 chr2:71299832 synonymous SNV . 0 24 hm5C_associated_SNPs_78508 0 0 1 0 3 NAGK chr2:71299777 3'AG 71299777 Downstream 56bp
chr2 71299832 71299832 1 + C T LUAD 71299829 + 71299809 71299849 41 AGGCTCATCAACCCTGATGGCTCCGAGAGTGGCTGCGGCGG AGGCTCATCAACCCTGATGGCTCTGAGAGTGGCTGCGGCGG < 41bp 0.727131857997807 0.5023144045574 0.3213134 0.19815686 prediction 0.449634906880816 Functional Loss - NAGK ENSG00000124357 CDS Human protein_coding chr2:71299829 chr2:71299832 synonymous SNV . 0 24 hm5C_associated_SNPs_78508 0 0 1 0 3 NAGK chr2:71299881 5'GT 71299881 Upstream 50bp
chrX 46322662 46322662 1 + T C GBM 46322661 + 46322641 46322681 41 GTTGCGAAGCCAGATGTGATCTTCAGGTTGGGACCAGGTGA GTTGCGAAGCCAGATGTGATCCTCAGGTTGGGACCAGGTGA < 41bp 0.792467717233655 0.567651319667107 0.15260097 0.0267497 prediction 0.449632795133097 Functional Loss - KRBOX4 ENSG00000147121 CDS Human protein_coding chrX:46322661 chrX:46322662 nonsynonymous SNV 0.973 0 22 hm5C_associated_SNPs_78511 0 0 1 0 2 KRBOX4 chrX:46322728 5'GT 46322728 Upstream 67bp
chrX 46322662 46322662 1 + T C GBM 46322661 + 46322641 46322681 41 GTTGCGAAGCCAGATGTGATCTTCAGGTTGGGACCAGGTGA GTTGCGAAGCCAGATGTGATCCTCAGGTTGGGACCAGGTGA < 41bp 0.792467717233655 0.567651319667107 0.15260097 0.0267497 prediction 0.449632795133097 Functional Loss - KRBOX4 ENSG00000147121 CDS Human protein_coding chrX:46322661 chrX:46322662 nonsynonymous SNV 0.973 0 22 hm5C_associated_SNPs_78511 0 0 1 0 2 KRBOX4 chrX:46322743 5'GT 46322743 Upstream 82bp
chr19 17534606 17534606 1 + C T ESCA 17534604 + 17534584 17534624 41 GCCTCCAGCCTCTATGGCATCTCAGGTGAGCACAGAGTGGG GCCTCCAGCCTCTATGGCATCTTAGGTGAGCACAGAGTGGG < 41bp 0.724805748705477 0.449173265796116 0.5052556 0.2700721 prediction 0.449611497410954 Functional Loss - MVB12A ENSG00000141971 CDS Human protein_coding chr19:17534604 chr19:17534606 stopgain 0.999 4 23 hm5C_associated_SNPs_78515 0 0 1 0 1 MVB12A chr19:17534608 5'GT 17534608 Upstream 3bp
chr19 30103069 30103069 1 + C T rs142203789 30103067 + 30103047 30103087 41 AGCTCTTAAAGGCAGATCTTCACGGGGCTATTATTTCAGGT AGCTCTTAAAGGCAGATCTTCATGGGGCTATTATTTCAGGT < 41bp 0.724803346018102 0.44778951617286 0.5981637 0.52477646 prediction 0.449606692036204 Functional Loss - POP4 ENSG00000105171 CDS Human protein_coding chr19:30103067 chr19:30103069 synonymous SNV . 0 23 hm5C_associated_SNPs_78518 0 0 1 0 2 POP4 chr19:30103024 3'AG 30103024 Downstream 46bp
chr19 30103069 30103069 1 + C T rs142203789 30103067 + 30103047 30103087 41 AGCTCTTAAAGGCAGATCTTCACGGGGCTATTATTTCAGGT AGCTCTTAAAGGCAGATCTTCATGGGGCTATTATTTCAGGT < 41bp 0.724803346018102 0.44778951617286 0.5981637 0.52477646 prediction 0.449606692036204 Functional Loss - POP4 ENSG00000105171 CDS Human protein_coding chr19:30103067 chr19:30103069 synonymous SNV . 0 23 hm5C_associated_SNPs_78518 0 0 1 0 2 POP4 chr19:30103085 5'GT 30103085 Upstream 17bp
chr19 42218945 42218945 1 + G A SKCM 42218942 + 42218922 42218962 41 AACTCCAAACCCGTGGAGGACAAGGATGCTGTGGCCTTCAC AACTCCAAACCCGTGGAGGACAAAGATGCTGTGGCCTTCAC < 41bp 0.724803045772557 0.4885464213015 0.42312723 0.24298474 prediction 0.449606091545113 Functional Loss - CEACAM5 ENSG00000105388 CDS Human protein_coding chr19:42218942 chr19:42218945 synonymous SNV . 0 24 hm5C_associated_SNPs_78519 0 0 0 0 1 CEACAM5 chr19:42218890 3'AG 42218890 Downstream 56bp
chr11 107518222 107518222 1 + C T SKCM 107518219 + 107518199 107518239 41 GAAATTCTTGAAGCCCAATACTCCACTGGAATCTCGGATTT GAAATTCTTGAAGCCCAATACTCTACTGGAATCTCGGATTT < 41bp 0.772457825933001 0.547660126872162 0.9457737 0.9098097 prediction 0.449595398121677 Functional Loss - ELMOD1 ENSG00000110675 CDS Human protein_coding chr11:107518219 chr11:107518222 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_78523 0 0 0 0 1 ELMOD1 chr11:107518194 3'AG 107518194 Downstream 29bp
chr9 141070105 141070105 1 + G A SKCM 141070102 + 141070082 141070122 41 GTGGATCTGGAGCCGGGCACCATGGACTCTGTGCGCTCGGG GTGGATCTGGAGCCGGGCACCATAGACTCTGTGCGCTCGGG < 41bp 0.724788984356746 0.497315034361786 0.6550808 0.5505973 prediction 0.449577968713493 Functional Loss - TUBBP5 ENSG00000159247 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:141070102 chr9:141070105 . . 0 24 hm5C_associated_SNPs_78529 0 0 0 0 1 TUBBP5 chr9:141070053 3'AG 141070053 Downstream 53bp
chr10 76910316 76910316 1 + C T rs151328415 76910314 + 76910294 76910334 41 GTCCTAATCAACTCTGCATTCGCCGCTGGACTACCAAGCAT GTCCTAATCAACTCTGCATTCGTCGCTGGACTACCAAGCAT < 41bp 0.838923615663732 0.614135769193958 0.07022244 0.06771734 prediction 0.449575692939549 Functional Loss - SAMD8 ENSG00000156671 CDS Human protein_coding chr10:76910314 chr10:76910316 synonymous SNV . 0 23 hm5C_associated_SNPs_78530 0 0 1 0 1 SAMD8 chr10:76910272 3'AG 76910272 Downstream 45bp
chr1 156347153 156347153 1 + G T LGG 156347151 + 156347131 156347171 41 GCTTCCTCATGGTCTTCCTGCAGCGTTACGGCTTCAGCAGC GCTTCCTCATGGTCTTCCTGCATCGTTACGGCTTCAGCAGC < 41bp 0.72477766963667 0.367159718617956 0.78611684 0.1383968 prediction 0.449555339273339 Functional Loss - RHBG ENSG00000132677 CDS Human protein_coding chr1:156347151 chr1:156347153 nonsynonymous SNV 0.649 0 23 hm5C_associated_SNPs_78534 0 0 0 0 1 RHBG chr1:156347092 3'AG 156347092 Downstream 62bp
chr7 44152463 44152463 1 + G C ESCA 44152462 + 44152442 44152482 41 CAAGCCCAGGACTACACCGGCGGCATGGGCATCGTCAACGG CAAGCCCAGGACTACACCGGCCGCATGGGCATCGTCAACGG < 41bp 0.875194112654294 0.650416877079234 0.8148228 0.28852072 prediction 0.44955447115012 Functional Loss - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44152462 chr7:44152463 nonsynonymous SNV 0.990 3 22 hm5C_associated_SNPs_78535 0 0 0 0 1 AEBP1 chr7:44152508 5'GT 44152508 Upstream 46bp
chr3 178928348 178928348 1 + G T STAD 178928346 + 178928326 178928366 41 AGGATTTAGCTATTCCCACGCAGGACTGGTAAGGCAAATCA AGGATTTAGCTATTCCCACGCATGACTGGTAAGGCAAATCA < 41bp 0.724777024909301 0.387935091824074 0.45124918 0.15072545 prediction 0.449554049818602 Functional Loss - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178928346 chr3:178928348 stopgain 1.000 1 23 hm5C_associated_SNPs_78536 0 0 0 0 1 PIK3CA chr3:178928353 5'GT 178928353 Upstream 6bp
chr15 40318222 40318222 1 + G T STAD 40318220 + 40318200 40318240 41 GGCAGACAGAGAAGCGTGTGCTGGAGACTGAACTTGTGGAC GGCAGACAGAGAAGCGTGTGCTTGAGACTGAACTTGTGGAC < 41bp 0.724769944371766 0.423192970814988 0.9040681 0.414001 prediction 0.449539888743532 Functional Loss - EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40318220 chr15:40318222 synonymous SNV . 0 23 hm5C_associated_SNPs_78541 0 0 1 0 2 EIF2AK4 chr15:40318178 3'AG 40318178 Downstream 45bp
chr15 40318222 40318222 1 + G T STAD 40318220 + 40318200 40318240 41 GGCAGACAGAGAAGCGTGTGCTGGAGACTGAACTTGTGGAC GGCAGACAGAGAAGCGTGTGCTTGAGACTGAACTTGTGGAC < 41bp 0.724769944371766 0.423192970814988 0.9040681 0.414001 prediction 0.449539888743532 Functional Loss - EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40318220 chr15:40318222 synonymous SNV . 0 23 hm5C_associated_SNPs_78541 0 0 1 0 2 EIF2AK4 chr15:40318290 5'GT 40318290 Upstream 69bp
chr15 42127204 42127204 1 + G T UCEC 42127201 + 42127181 42127221 41 TCCACAGAGGTGAGTGTGGCCGTGACCCCAGATGGTTACGC TCCACAGAGGTGAGTGTGGCCGTTACCCCAGATGGTTACGC < 41bp 0.724767263697033 0.332132483902718 0.502774 0.34740043 prediction 0.449534527394065 Functional Loss - JMJD7;JMJD7-PLA2G4B ENSG00000168970;ENSG00000243708;ENSG00000243789 CDS Human other chr15:42127201 chr15:42127204 synonymous SNV . 0 24 hm5C_associated_SNPs_78543 0 0 1 0 2 JMJD7;JMJD7-PLA2G4B chr15:42127168 3'AG 42127168 Downstream 37bp
chr15 42127204 42127204 1 + G T UCEC 42127201 + 42127181 42127221 41 TCCACAGAGGTGAGTGTGGCCGTGACCCCAGATGGTTACGC TCCACAGAGGTGAGTGTGGCCGTTACCCCAGATGGTTACGC < 41bp 0.724767263697033 0.332132483902718 0.502774 0.34740043 prediction 0.449534527394065 Functional Loss - JMJD7;JMJD7-PLA2G4B ENSG00000168970;ENSG00000243708;ENSG00000243789 CDS Human other chr15:42127201 chr15:42127204 synonymous SNV . 0 24 hm5C_associated_SNPs_78543 0 0 1 0 2 JMJD7;JMJD7-PLA2G4B chr15:42127176 3'AG 42127176 Downstream 29bp
chr16 19710916 19710916 1 + C T UCEC 19710913 + 19710893 19710933 41 AACAACAAGCTCAACCAGCTCTCCGTCAACCTGTGGCACCT AACAACAAGCTCAACCAGCTCTCTGTCAACCTGTGGCACCT < 41bp 0.724764830690159 0.490879450584509 0.076004714 0.08782941 prediction 0.449529661380317 Functional Loss - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19710913 chr16:19710916 synonymous SNV . 0 24 hm5C_associated_SNPs_78544 0 0 1 0 2 C16orf62 chr16:19710824 3'AG 19710824 Downstream 93bp
chr16 19710916 19710916 1 + C T UCEC 19710913 + 19710893 19710933 41 AACAACAAGCTCAACCAGCTCTCCGTCAACCTGTGGCACCT AACAACAAGCTCAACCAGCTCTCTGTCAACCTGTGGCACCT < 41bp 0.724764830690159 0.490879450584509 0.076004714 0.08782941 prediction 0.449529661380317 Functional Loss - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19710913 chr16:19710916 synonymous SNV . 0 24 hm5C_associated_SNPs_78544 0 0 1 0 2 C16orf62 chr16:19710970 5'GT 19710970 Upstream 55bp
chr12 132401033 132401033 1 + C T GBM 132401031 + 132401011 132401051 41 GGGCGTGGTGATGACGCCCCCTCGAAACCGGACGCTGCCCG GGGCGTGGTGATGACGCCCCCTTGAAACCGGACGCTGCCCG < 41bp 0.853233134889087 0.628473265585223 0.9129883 0.19499707 prediction 0.449519738607728 Functional Loss - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132401031 chr12:132401033 stopgain 0.769 1 23 hm5C_associated_SNPs_78545 0 0 0 0 1 ULK1 chr12:132400943 3'AG 132400943 Downstream 91bp
chr7 98249013 98249013 1 + T C UCEC 98249012 + 98248992 98249032 41 CCGGCGACTTCCGCGAGGTGCTCCAGCAGCGGCTGGGGGAG CCGGCGACTTCCGCGAGGTGCCCCAGCAGCGGCTGGGGGAG < 41bp 0.833637352368456 0.608878205027388 0.9293753 0.3344621 prediction 0.449518294682136 Functional Loss - NPTX2 ENSG00000106236 CDS Human protein_coding chr7:98249012 chr7:98249013 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_78546 0 0 1 0 1 NPTX2 chr7:98248955 3'AG 98248955 Downstream 59bp
chr2 220045847 220045847 1 + G A STAD 220045844 + 220045824 220045864 41 GCTGATCCAGAGGATGTACACTCGCCTGGAGCCCCTGCTCA GCTGATCCAGAGGATGTACACTCACCTGGAGCCCCTGCTCA < 41bp 0.79062744929598 0.565873189371707 0.16287646 0.047273427 prediction 0.449508519848546 Functional Loss - RETREG2 ENSG00000144567 CDS Human protein_coding chr2:220045844 chr2:220045847 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_78548 0 0 1 0 1 RETREG2 chr2:220045927 5'GT 220045927 Upstream 81bp
chr16 57149395 57149395 1 + C T SKCM 57149393 + 57149373 57149413 41 TCCTCTCTCCCCTAGATCGTCTCCAGCAAGAAGATCACTAG TCCTCTCTCCCCTAGATCGTCTTCAGCAAGAAGATCACTAG < 41bp 0.724752594843909 0.433472026098808 0.93355834 0.12834764 prediction 0.449505189687819 Functional Loss - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57149393 chr16:57149395 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_78549 0 0 0 0 2 CPNE2 chr16:57149388 3'AG 57149388 Downstream 8bp
chr16 57149395 57149395 1 + C T SKCM 57149393 + 57149373 57149413 41 TCCTCTCTCCCCTAGATCGTCTCCAGCAAGAAGATCACTAG TCCTCTCTCCCCTAGATCGTCTTCAGCAAGAAGATCACTAG < 41bp 0.724752594843909 0.433472026098808 0.93355834 0.12834764 prediction 0.449505189687819 Functional Loss - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57149393 chr16:57149395 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_78549 0 0 0 0 2 CPNE2 chr16:57149462 5'GT 57149462 Upstream 68bp
chr2 192542965 192542965 1 + C T rs541440668 192542963 + 192542943 192542983 41 CGGGACAGGCTGGGCGCGCGCCCGTGTGAGTGAGCGGGACT CGGGACAGGCTGGGCGCGCGCCTGTGTGAGTGAGCGGGACT < 41bp 0.746993077414678 0.522243091054956 0.4313766 0.42318732 prediction 0.449499972719442 Functional Loss - NABP1 ENSG00000173559 UTR5 Human protein_coding chr2:192542963 chr2:192542965 . . 0 23 hm5C_associated_SNPs_78550 0 0 1 0 1 NABP1 chr2:192542967 5'GT 192542967 Upstream 3bp
chr19 50172182 50172182 1 + C T SKCM 50172180 + 50172160 50172200 41 GGTCCAAGAGCAGCTGAAATCTCCGCCCAGCCCAGGTGAGG GGTCCAAGAGCAGCTGAAATCTTCGCCCAGCCCAGGTGAGG < 41bp 0.79849284551707 0.573744038861936 0.69467413 0.48208788 prediction 0.449497613310267 Functional Loss - BCL2L12 ENSG00000126453 CDS Human protein_coding chr19:50172180 chr19:50172182 nonsynonymous SNV 0.827 4 23 hm5C_associated_SNPs_78553 0 0 1 0 2 BCL2L12 chr19:50172108 3'AG 50172108 Downstream 75bp
chr19 50172182 50172182 1 + C T SKCM 50172180 + 50172160 50172200 41 GGTCCAAGAGCAGCTGAAATCTCCGCCCAGCCCAGGTGAGG GGTCCAAGAGCAGCTGAAATCTTCGCCCAGCCCAGGTGAGG < 41bp 0.79849284551707 0.573744038861936 0.69467413 0.48208788 prediction 0.449497613310267 Functional Loss - BCL2L12 ENSG00000126453 CDS Human protein_coding chr19:50172180 chr19:50172182 nonsynonymous SNV 0.827 4 23 hm5C_associated_SNPs_78553 0 0 1 0 2 BCL2L12 chr19:50172194 5'GT 50172194 Upstream 13bp
chrX 47060918 47060918 1 + C T rs193168226 47060916 + 47060896 47060936 41 CCTGCCTGGATGAGGCCCGACACGGGTTTGAGAGCGGGGAC CCTGCCTGGATGAGGCCCGACATGGGTTTGAGAGCGGGGAC < 41bp 0.840934975335095 0.616189735198935 0.06530535 0.10129398 prediction 0.449490480272322 Functional Loss - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47060916 chrX:47060918 synonymous SNV . 0 23 hm5C_associated_SNPs_78554 1 0 1 0 2 UBA1 chrX:47060877 3'AG 47060877 Downstream 42bp
chrX 47060918 47060918 1 + C T rs193168226 47060916 + 47060896 47060936 41 CCTGCCTGGATGAGGCCCGACACGGGTTTGAGAGCGGGGAC CCTGCCTGGATGAGGCCCGACATGGGTTTGAGAGCGGGGAC < 41bp 0.840934975335095 0.616189735198935 0.06530535 0.10129398 prediction 0.449490480272322 Functional Loss - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47060916 chrX:47060918 synonymous SNV . 0 23 hm5C_associated_SNPs_78554 1 0 1 0 2 UBA1 chrX:47061009 5'GT 47061009 Upstream 92bp
chr3 19574984 19574984 1 + G A UCEC 19574981 + 19574961 19575001 41 TCTGTCACCTCAGCAGCCATCACGGTTTTGCTCTTTGCACA TCTGTCACCTCAGCAGCCATCACAGTTTTGCTCTTTGCACA < 41bp 0.724737474692989 0.491792191998362 0.5898411 0.42834157 prediction 0.449474949385979 Functional Loss - KCNH8 ENSG00000183960 CDS Human protein_coding chr3:19574981 chr3:19574984 nonsynonymous SNV 0.133 1 24 hm5C_associated_SNPs_78556 0 0 0 0 1 KCNH8 chr3:19574887 3'AG 19574887 Downstream 98bp
chr1 202544227 202544227 1 + C T UCEC 202544225 + 202544205 202544245 41 ACCCGAGTGGTGGCCAGACTCTCGGAGTCCATCGAGTCCTC ACCCGAGTGGTGGCCAGACTCTTGGAGTCCATCGAGTCCTC < 41bp 0.724735313674789 0.466093912656159 0.35332566 0.21956015 prediction 0.449470627349578 Functional Loss - PPP1R12B ENSG00000077157 CDS Human protein_coding chr1:202544225 chr1:202544227 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_78557 0 0 0 0 1 PPP1R12B chr1:202544130 3'AG 202544130 Downstream 98bp
chrX 47058305 47058305 1 + C T UCEC 47058303 + 47058283 47058323 41 TCCGTGTTGTCCGAAGTGCCCTCGGTGCCAACCAACGTGAG TCCGTGTTGTCCGAAGTGCCCTTGGTGCCAACCAACGTGAG < 41bp 0.82441162732025 0.599676582846998 0.16092017 0.12134081 prediction 0.449470088946505 Functional Loss - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47058303 chrX:47058305 nonsynonymous SNV 0.992 0 23 hm5C_associated_SNPs_78559 0 0 1 0 1 UBA1 chrX:47058318 5'GT 47058318 Upstream 14bp
chr19 12088997 12088997 1 + G T LUAD 12088995 + 12088975 12089015 41 ATTGTGGAGAAACTTTTACCCAGGTTCCAGATGACAGGCTG ATTGTGGAGAAACTTTTACCCATGTTCCAGATGACAGGCTG < 41bp 0.724733476285067 0.401125497398141 0.39580768 0.061136156 prediction 0.449466952570134 Functional Loss - ZNF763 ENSG00000197054;ENSG00000267179 CDS Human other chr19:12088995 chr19:12088997 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_78561 0 0 0 0 1 ZNF763 chr19:12088931 3'AG 12088931 Downstream 67bp
chr20 34206899 34206899 1 + G A GBM 34206896 + 34206876 34206916 41 ATGAGGATTTTGTGCGGAAGCCCGACTATGCTTTGAGCTCT ATGAGGATTTTGTGCGGAAGCCCAACTATGCTTTGAGCTCT < 41bp 0.752835226294188 0.52810462686797 0.17896155 0.30117238 prediction 0.449461198852435 Functional Loss - SPAG4 ENSG00000061656 CDS Human protein_coding chr20:34206896 chr20:34206899 nonsynonymous SNV 0.971 4 24 hm5C_associated_SNPs_78563 0 0 1 0 2 SPAG4 chr20:34206845 3'AG 34206845 Downstream 55bp
chr20 34206899 34206899 1 + G A GBM 34206896 + 34206876 34206916 41 ATGAGGATTTTGTGCGGAAGCCCGACTATGCTTTGAGCTCT ATGAGGATTTTGTGCGGAAGCCCAACTATGCTTTGAGCTCT < 41bp 0.752835226294188 0.52810462686797 0.17896155 0.30117238 prediction 0.449461198852435 Functional Loss - SPAG4 ENSG00000061656 CDS Human protein_coding chr20:34206896 chr20:34206899 nonsynonymous SNV 0.971 4 24 hm5C_associated_SNPs_78563 0 0 1 0 2 SPAG4 chr20:34206920 5'GT 34206920 Upstream 22bp
chr15 75641262 75641262 1 + G A COAD 75641259 + 75641239 75641279 41 CCCTCAGGATGCCTGAGGGCCCCGAGCTGCACCTGGCCAGC CCCTCAGGATGCCTGAGGGCCCCAAGCTGCACCTGGCCAGC < 41bp 0.794123381444787 0.569397981300102 0.09110516 0.019940019 prediction 0.449450800289369 Functional Loss - NEIL1 ENSG00000140398 CDS Human protein_coding chr15:75641259 chr15:75641262 nonsynonymous SNV 0.455 4 24 hm5C_associated_SNPs_78564 0 0 0 0 1 NEIL1 chr15:75641225 3'AG 75641225 Downstream 38bp
chr3 119336910 119336910 1 + T C SKCM 119336909 + 119336889 119336929 41 CACATGAGGGCTGTGCACCTCTACATCAGCGCCCTGGAGAA CACATGAGGGCTGTGCACCTCCACATCAGCGCCCTGGAGAA < 41bp 0.830414031234465 0.605692306810378 0.94336224 0.45860434 prediction 0.449443448848174 Functional Loss - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119336909 chr3:119336910 nonsynonymous SNV 0.975 5 22 hm5C_associated_SNPs_78568 0 0 0 0 1 PLA1A chr3:119336866 3'AG 119336866 Downstream 45bp
chr2 79348786 79348786 1 + G A CESC 79348783 + 79348763 79348803 41 GCTACTACTTTAATGAAGACCGTGAGACCTGGGTTGATGCA GCTACTACTTTAATGAAGACCGTAAGACCTGGGTTGATGCA < 41bp 0.72471690433062 0.486479617269815 0.2149589 0.09555462 prediction 0.449433808661241 Functional Loss - REG1A ENSG00000115386 CDS Human protein_coding chr2:79348783 chr2:79348786 nonsynonymous SNV 0.023 0 24 hm5C_associated_SNPs_78570 0 0 0 0 2 REG1A chr2:79348688 3'AG 79348688 Downstream 99bp
chr2 79348786 79348786 1 + G A CESC 79348783 + 79348763 79348803 41 GCTACTACTTTAATGAAGACCGTGAGACCTGGGTTGATGCA GCTACTACTTTAATGAAGACCGTAAGACCTGGGTTGATGCA < 41bp 0.72471690433062 0.486479617269815 0.2149589 0.09555462 prediction 0.449433808661241 Functional Loss - REG1A ENSG00000115386 CDS Human protein_coding chr2:79348783 chr2:79348786 nonsynonymous SNV 0.023 0 24 hm5C_associated_SNPs_78570 0 0 0 0 2 REG1A chr2:79348806 5'GT 79348806 Upstream 21bp
chr12 58112151 58112151 1 + C T SKCM 58112148 + 58112128 58112168 41 TTCCGTCAGACCGAGACCGGCTCCGTTCGGAGGTGAAGGCT TTCCGTCAGACCGAGACCGGCTCTGTTCGGAGGTGAAGGCT < 41bp 0.74756997129787 0.522854516332084 0.052155018 0.044587135 prediction 0.449430909931573 Functional Loss - OS9 ENSG00000135506 CDS Human protein_coding chr12:58112148 chr12:58112151 nonsynonymous SNV 0.967 3 24 hm5C_associated_SNPs_78572 0 0 1 0 1 OS9 chr12:58112159 5'GT 58112159 Upstream 9bp
chr19 40149114 40149114 1 + T C UCEC 40149113 + 40149093 40149133 41 CCCTCAGCAACGAACCACAGCTGCAGGTGGATTTCTACACT CCCTCAGCAACGAACCACAGCCGCAGGTGGATTTCTACACT < 41bp 0.782283563770017 0.557574053832081 0.16620922 0.16737375 prediction 0.449419019875872 Functional Loss - LGALS16 ENSG00000249861 CDS Human protein_coding chr19:40149113 chr19:40149114 nonsynonymous SNV 0.015 3 22 hm5C_associated_SNPs_78574 0 0 0 0 1 LGALS16 chr19:40149100 3'AG 40149100 Downstream 15bp
chr11 67254515 67254515 1 + G T UCEC 67254512 + 67254492 67254532 41 CGGACGCTGCACAGTGACGACGAGGGCACCGTGCTGGACGA CGGACGCTGCACAGTGACGACGATGGCACCGTGCTGGACGA < 41bp 0.932367807865801 0.707660507762595 0.51148134 0.16851646 prediction 0.449414600206412 Functional Loss - AIP ENSG00000110711 CDS Human protein_coding chr11:67254512 chr11:67254515 nonsynonymous SNV 0.045 1 24 hm5C_associated_SNPs_78576 0 0 1 0 1 AIP chr11:67254477 3'AG 67254477 Downstream 39bp
chr16 84879454 84879454 1 + C T UCEC 84879452 + 84879432 84879472 41 CCAGTCAGTGCATCTGGGAGCACGGGCCCACCAGTCTGCTG CCAGTCAGTGCATCTGGGAGCATGGGCCCACCAGTCTGCTG < 41bp 0.818632807995911 0.593925533922855 0.69739527 0.7368768 prediction 0.449414548146113 Functional Loss - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84879452 chr16:84879454 synonymous SNV . 0 23 hm5C_associated_SNPs_78577 0 0 0 0 2 CRISPLD2 chr16:84879392 3'AG 84879392 Downstream 63bp
chr16 84879454 84879454 1 + C T UCEC 84879452 + 84879432 84879472 41 CCAGTCAGTGCATCTGGGAGCACGGGCCCACCAGTCTGCTG CCAGTCAGTGCATCTGGGAGCATGGGCCCACCAGTCTGCTG < 41bp 0.818632807995911 0.593925533922855 0.69739527 0.7368768 prediction 0.449414548146113 Functional Loss - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84879452 chr16:84879454 synonymous SNV . 0 23 hm5C_associated_SNPs_78577 0 0 0 0 2 CRISPLD2 chr16:84879510 5'GT 84879510 Upstream 57bp
chr4 15716967 15716967 1 + A C HNSC 15716963 + 15716943 15716983 41 GCTGAATGGTTCAGAGCCAACAGGAGCCTATCCCATCAAAG GCTGAATGGTTCAGAGCCAACAGGCGCCTATCCCATCAAAG < 41bp 0.929327032708529 0.70462048697981 0.5405597 0.42469972 prediction 0.449413091457439 Functional Loss - BST1 ENSG00000109743 CDS Human protein_coding chr4:15716963 chr4:15716967 synonymous SNV . 0 25 hm5C_associated_SNPs_78579 0 0 0 0 1 BST1 chr4:15716908 3'AG 15716908 Downstream 60bp
chr10 49618113 49618113 1 + G A LAML 49618110 + 49618090 49618130 41 TCATGGATGCAAATCTTTGCCAAGTGATTCAGATGGAGCTA TCATGGATGCAAATCTTTGCCAAATGATTCAGATGGAGCTA < 41bp 0.730585902564213 0.505880897237652 0.20382231 0.19998121 prediction 0.449410010653121 Functional Loss - MAPK8 ENSG00000107643 CDS Human protein_coding chr10:49618110 chr10:49618113 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_78580 0 0 1 0 2 MAPK8 chr10:49618073 3'AG 49618073 Downstream 41bp
chr10 49618113 49618113 1 + G A LAML 49618110 + 49618090 49618130 41 TCATGGATGCAAATCTTTGCCAAGTGATTCAGATGGAGCTA TCATGGATGCAAATCTTTGCCAAATGATTCAGATGGAGCTA < 41bp 0.730585902564213 0.505880897237652 0.20382231 0.19998121 prediction 0.449410010653121 Functional Loss - MAPK8 ENSG00000107643 CDS Human protein_coding chr10:49618110 chr10:49618113 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_78580 0 0 1 0 2 MAPK8 chr10:49618211 5'GT 49618211 Upstream 99bp
chr2 26671587 26671587 1 + G A COAD 26671584 + 26671564 26671604 41 GAGGAGGCAGAAGAGGCCGCCGCGGAACCAGAGTCCTACCT GAGGAGGCAGAAGAGGCCGCCGCAGAACCAGAGTCCTACCT < 41bp 0.7247000315209 0.480445807438947 0.9039064 0.3132794 prediction 0.4494000630418 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26671584 chr2:26671587 synonymous SNV . 0 24 hm5C_associated_SNPs_78588 0 0 0 0 2 DRC1 chr2:26671559 3'AG 26671559 Downstream 29bp
chr2 26671587 26671587 1 + G A COAD 26671584 + 26671564 26671604 41 GAGGAGGCAGAAGAGGCCGCCGCGGAACCAGAGTCCTACCT GAGGAGGCAGAAGAGGCCGCCGCAGAACCAGAGTCCTACCT < 41bp 0.7247000315209 0.480445807438947 0.9039064 0.3132794 prediction 0.4494000630418 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26671584 chr2:26671587 synonymous SNV . 0 24 hm5C_associated_SNPs_78588 0 0 0 0 2 DRC1 chr2:26671671 5'GT 26671671 Upstream 85bp
chr2 26671586 26671586 1 + C T UCEC 26671584 + 26671564 26671604 41 GAGGAGGCAGAAGAGGCCGCCGCGGAACCAGAGTCCTACCT GAGGAGGCAGAAGAGGCCGCCGTGGAACCAGAGTCCTACCT < 41bp 0.7247000315209 0.452156494477264 0.9039064 0.8618412 prediction 0.4494000630418 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26671584 chr2:26671586 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_78589 0 0 0 0 2 DRC1 chr2:26671559 3'AG 26671559 Downstream 28bp
chr2 26671586 26671586 1 + C T UCEC 26671584 + 26671564 26671604 41 GAGGAGGCAGAAGAGGCCGCCGCGGAACCAGAGTCCTACCT GAGGAGGCAGAAGAGGCCGCCGTGGAACCAGAGTCCTACCT < 41bp 0.7247000315209 0.452156494477264 0.9039064 0.8618412 prediction 0.4494000630418 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26671584 chr2:26671586 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_78589 0 0 0 0 2 DRC1 chr2:26671671 5'GT 26671671 Upstream 86bp
chr7 55221800 55221800 1 + G A BRCA 55221797 + 55221777 55221817 41 CGTACCAGATGGATGTGAACCCCGAGGGCAAATACAGCTTT CGTACCAGATGGATGTGAACCCCAAGGGCAAATACAGCTTT < 41bp 0.724697971632177 0.493145017211175 0.05865535 0.098863125 prediction 0.449395943264354 Functional Loss - EGFR ENSG00000146648 CDS Human protein_coding chr7:55221797 chr7:55221800 nonsynonymous SNV 0.520 0 24 hm5C_associated_SNPs_78590 0 0 1 0 2 EGFR chr7:55221704 3'AG 55221704 Downstream 97bp
chr7 55221800 55221800 1 + G A BRCA 55221797 + 55221777 55221817 41 CGTACCAGATGGATGTGAACCCCGAGGGCAAATACAGCTTT CGTACCAGATGGATGTGAACCCCAAGGGCAAATACAGCTTT < 41bp 0.724697971632177 0.493145017211175 0.05865535 0.098863125 prediction 0.449395943264354 Functional Loss - EGFR ENSG00000146648 CDS Human protein_coding chr7:55221797 chr7:55221800 nonsynonymous SNV 0.520 0 24 hm5C_associated_SNPs_78590 0 0 1 0 2 EGFR chr7:55221845 5'GT 55221845 Upstream 46bp
chr4 100532601 100532601 1 + C T LUSC 100532599 + 100532579 100532619 41 ACATTGGGAAGGCTGGTCTTCACGGTAGCCAGGTAACTCAC ACATTGGGAAGGCTGGTCTTCATGGTAGCCAGGTAACTCAC < 41bp 0.837442401877001 0.61274502539243 0.41540423 0.30490446 prediction 0.449394752969142 Functional Loss - MTTP ENSG00000138823 CDS Human protein_coding chr4:100532599 chr4:100532601 synonymous SNV . 0 23 hm5C_associated_SNPs_78591 0 0 1 0 1 MTTP chr4:100532610 5'GT 100532610 Upstream 10bp
chr17 61557710 61557710 1 + C T PRAD 61557708 + 61557688 61557728 41 ACGCCCCCAGGCTTCACAGACACGGGGGCCTACTGGCGCTC ACGCCCCCAGGCTTCACAGACATGGGGGCCTACTGGCGCTC < 41bp 0.810431589589818 0.585739005664334 0.883348 0.9064019 prediction 0.449385167850967 Functional Loss - ACE ENSG00000159640 CDS Human protein_coding chr17:61557708 chr17:61557710 nonsynonymous SNV 0.048 3 23 hm5C_associated_SNPs_78592 0 0 0 0 1 ACE chr17:61557698 3'AG 61557698 Downstream 13bp
chr20 47706245 47706245 1 + G A UCEC 47706242 + 47706222 47706262 41 TTCTTCAAGCATTCTTAGAACGCGGTTCAAACACAATAGCA TTCTTCAAGCATTCTTAGAACGCAGTTCAAACACAATAGCA < 41bp 0.752749651719846 0.528057876981962 0.3788134 0.15605074 prediction 0.449383549475768 Functional Loss - CSE1L ENSG00000124207 CDS Human protein_coding chr20:47706242 chr20:47706245 nonsynonymous SNV 0.620 1 24 hm5C_associated_SNPs_78594 0 0 1 0 1 CSE1L chr20:47706283 5'GT 47706283 Upstream 39bp
chr12 57857530 57857530 1 + T C LIHC 57857529 + 57857509 57857549 41 GCTATGGCGAGCCCTGCTGTCTCCGGCCCCTCCCCAGTCAG GCTATGGCGAGCCCTGCTGTCCCCGGCCCCTCCCCAGTCAG < 41bp 0.81400007668706 0.589308360928547 0.37490514 0.21247077 prediction 0.449383431517026 Functional Loss - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57857529 chr12:57857530 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_78595 0 0 0 0 1 GLI1 chr12:57857574 5'GT 57857574 Upstream 45bp
chr5 153056654 153056654 1 + G A SKCM 153056651 + 153056631 153056671 41 TATATCTCGCCGGGGGAATGCTGGGGATTGTCTGGCTAACC TATATCTCGCCGGGGGAATGCTGAGGATTGTCTGGCTAACC < 41bp 0.757077582793071 0.532386733619808 0.8715972 0.55304223 prediction 0.449381698346526 Functional Loss - GRIA1 ENSG00000155511 CDS Human protein_coding chr5:153056651 chr5:153056654 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_78596 0 0 0 0 1 GRIA1 chr5:153056721 5'GT 153056721 Upstream 68bp
chrX 16142472 16142472 1 + G A rs35636070 16142469 + 16142449 16142489 41 GGGGTGTCTGTCTTCACACTCACGGCGCTCTCGGCAGACAG GGGGTGTCTGTCTTCACACTCACAGCGCTCTCGGCAGACAG < 41bp 0.785902740464836 0.561213334673316 0.8893948 0.1896421 prediction 0.449378811583039 Functional Loss - GRPR ENSG00000126010 CDS Human protein_coding chrX:16142469 chrX:16142472 synonymous SNV . 0 24 hm5C_associated_SNPs_78598 0 0 0 0 1 GRPR chrX:16142489 5'GT 16142489 Upstream 18bp
chr19 47879211 47879211 1 + G T LUSC 47879208 + 47879188 47879228 41 AGTTCAAGCTTCGGCATGACCTGGCGCAGCTGCAGGCCGCT AGTTCAAGCTTCGGCATGACCTGTCGCAGCTGCAGGCCGCT < 41bp 0.72468761923084 0.311566486827147 0.80728245 0.18478978 prediction 0.449375238461681 Functional Loss - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47879208 chr19:47879211 nonsynonymous SNV 0.625 0 24 hm5C_associated_SNPs_78600 0 0 1 0 1 DHX34 chr19:47879181 3'AG 47879181 Downstream 31bp
chr3 158531837 158531837 1 + C T LUAD 158531835 + 158531815 158531855 41 GTTCTGCTGGTCACACAACCCTCGGGATCACACTTATGATT GTTCTGCTGGTCACACAACCCTTGGGATCACACTTATGATT < 41bp 0.837951157064467 0.613264436989506 0.033183634 0.026845992 prediction 0.449373440149922 Functional Loss - MFSD1 ENSG00000118855 CDS Human protein_coding chr3:158531835 chr3:158531837 synonymous SNV . 0 23 hm5C_associated_SNPs_78601 0 0 1 1 2 MFSD1 chr3:158531754 3'AG 158531754 Downstream 84bp
chr3 158531837 158531837 1 + C T LUAD 158531835 + 158531815 158531855 41 GTTCTGCTGGTCACACAACCCTCGGGATCACACTTATGATT GTTCTGCTGGTCACACAACCCTTGGGATCACACTTATGATT < 41bp 0.837951157064467 0.613264436989506 0.033183634 0.026845992 prediction 0.449373440149922 Functional Loss - MFSD1 ENSG00000118855 CDS Human protein_coding chr3:158531835 chr3:158531837 synonymous SNV . 0 23 hm5C_associated_SNPs_78601 0 0 1 1 2 MFSD1 chr3:158531856 5'GT 158531856 Upstream 20bp
chr2 176988674 176988674 1 + C T READ 176988672 + 176988652 176988692 41 CTCTTTGTAGACAACCCCGCCGCGAACTGGATCCACGCTCG CTCTTTGTAGACAACCCCGCCGTGAACTGGATCCACGCTCG < 41bp 0.809656918188021 0.584972080317344 0.36408177 0.3635882 prediction 0.449369675741354 Functional Loss - HOXD9 ENSG00000128709 CDS Human protein_coding chr2:176988672 chr2:176988674 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_78603 0 0 1 0 1 HOXD9 chr2:176988662 3'AG 176988662 Downstream 13bp
chr15 90760693 90760693 1 + C T BLCA 90760691 + 90760671 90760711 41 GCTCTGAAGAGCGGCCATTCCTCAGATTCGAAGCTGAACAC GCTCTGAAGAGCGGCCATTCCTTAGATTCGAAGCTGAACAC < 41bp 0.724680431825672 0.446227675468987 0.76106685 0.5439715 prediction 0.449360863651344 Functional Loss - SEMA4B ENSG00000185033 CDS Human protein_coding chr15:90760691 chr15:90760693 synonymous SNV . 0 23 hm5C_associated_SNPs_78606 0 0 1 0 1 SEMA4B chr15:90760671 3'AG 90760671 Downstream 23bp
chr1 171761219 171761219 1 + G A UCEC 171761216 + 171761196 171761236 41 GCAGCCTCCCCCTCTTTGTCCACGATCATTTTCCAAAGTCC GCAGCCTCCCCCTCTTTGTCCACAATCATTTTCCAAAGTCC < 41bp 0.798640113506852 0.573967948411553 0.25250477 0.061050475 prediction 0.449344330190597 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171761216 chr1:171761219 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_78611 0 0 1 0 1 METTL13 chr1:171761157 3'AG 171761157 Downstream 63bp
chr2 197511104 197511104 1 + C T LGG 197511102 + 197511082 197511122 41 AGTGTCCAGACCGGTCCTTTCTCCAACCCACATCAACGCTA AGTGTCCAGACCGGTCCTTTCTTCAACCCACATCAACGCTA < 41bp 0.724667928338176 0.428205381373935 0.9602436 0.052363545 prediction 0.449335856676352 Functional Loss - CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197511102 chr2:197511104 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_78613 0 0 1 1 1 CCDC150 chr2:197511065 3'AG 197511065 Downstream 40bp
chr9 96429453 96429453 1 + C T SKCM 96429451 + 96429431 96429471 41 GTCAAGAAGGAGAGTGGGAGCTCGGCAGCTGGCATCTTGGA GTCAAGAAGGAGAGTGGGAGCTTGGCAGCTGGCATCTTGGA < 41bp 0.724665844146844 0.440183435850321 0.20724568 0.22453827 prediction 0.449331688293688 Functional Loss - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96429451 chr9:96429453 nonsynonymous SNV 0.521 1 23 hm5C_associated_SNPs_78615 0 0 1 0 3 PHF2 chr9:96429359 3'AG 96429359 Downstream 95bp
chr9 96429453 96429453 1 + C T SKCM 96429451 + 96429431 96429471 41 GTCAAGAAGGAGAGTGGGAGCTCGGCAGCTGGCATCTTGGA GTCAAGAAGGAGAGTGGGAGCTTGGCAGCTGGCATCTTGGA < 41bp 0.724665844146844 0.440183435850321 0.20724568 0.22453827 prediction 0.449331688293688 Functional Loss - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96429451 chr9:96429453 nonsynonymous SNV 0.521 1 23 hm5C_associated_SNPs_78615 0 0 1 0 3 PHF2 chr9:96429362 3'AG 96429362 Downstream 92bp
chr9 96429453 96429453 1 + C T SKCM 96429451 + 96429431 96429471 41 GTCAAGAAGGAGAGTGGGAGCTCGGCAGCTGGCATCTTGGA GTCAAGAAGGAGAGTGGGAGCTTGGCAGCTGGCATCTTGGA < 41bp 0.724665844146844 0.440183435850321 0.20724568 0.22453827 prediction 0.449331688293688 Functional Loss - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96429451 chr9:96429453 nonsynonymous SNV 0.521 1 23 hm5C_associated_SNPs_78615 0 0 1 0 3 PHF2 chr9:96429522 5'GT 96429522 Upstream 70bp
chr11 71701743 71701743 1 + T C UCEC 71701742 + 71701722 71701762 41 TTTGCAGAAATGTGTGCAGACTACATGGCATCTACCATAGG TTTGCAGAAATGTGTGCAGACCACATGGCATCTACCATAGG < 41bp 0.724663071947832 0.451192371980009 0.92908216 0.09342438 prediction 0.449326143895665 Functional Loss - RNF121 ENSG00000137522 CDS Human protein_coding chr11:71701742 chr11:71701743 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_78616 0 0 1 0 1 RNF121 chr11:71701763 5'GT 71701763 Upstream 21bp
chr6 88125461 88125461 1 + G A SKCM 88125458 + 88125438 88125478 41 GTCTAGATTAGGCTCTGTTACCCGAGAAATTACAGATAACA GTCTAGATTAGGCTCTGTTACCCAAGAAATTACAGATAACA < 41bp 0.736527594964396 0.511866345949343 0.55045646 0.19075397 prediction 0.449322498030106 Functional Loss - CFAP206 ENSG00000213204;ENSG00000272514 CDS Human other chr6:88125458 chr6:88125461 nonsynonymous SNV 0.885 3 24 hm5C_associated_SNPs_78617 0 0 0 0 1 CFAP206 chr6:88125404 3'AG 88125404 Downstream 58bp
chr6 32359467 32359467 1 + C T rs149171231 32359465 + 32359445 32359485 41 ATGAGTGATCCGCATGGGACCGCGATGCCTCTGACGTCTGC ATGAGTGATCCGCATGGGACCGTGATGCCTCTGACGTCTGC < 41bp 0.729562077847575 0.504901369617696 0.36141643 0.23902312 prediction 0.449321416459758 Functional Loss - HCG23 ENSG00000228962 ncRNA_exonic Human antisense chr6:32359465 chr6:32359467 . . 0 23 hm5C_associated_SNPs_78618 0 0 0 0 2 HCG23 chr6:32359390 3'AG 32359390 Downstream 78bp
chr6 32359467 32359467 1 + C T rs149171231 32359465 + 32359445 32359485 41 ATGAGTGATCCGCATGGGACCGCGATGCCTCTGACGTCTGC ATGAGTGATCCGCATGGGACCGTGATGCCTCTGACGTCTGC < 41bp 0.729562077847575 0.504901369617696 0.36141643 0.23902312 prediction 0.449321416459758 Functional Loss - HCG23 ENSG00000228962 ncRNA_exonic Human antisense chr6:32359465 chr6:32359467 . . 0 23 hm5C_associated_SNPs_78618 0 0 0 0 2 HCG23 chr6:32359517 5'GT 32359517 Upstream 51bp
chr4 651250 651250 1 + G A SKCM 651247 + 651227 651267 41 CAGGACATGGTCCTTTACCACGTGAAGTGCGACAGGGACGA CAGGACATGGTCCTTTACCACGTAAAGTGCGACAGGGACGA < 41bp 0.775142565368934 0.550487543702071 0.33005238 0.3041127 prediction 0.449310043333726 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:651247 chr4:651250 synonymous SNV . 0 24 hm5C_associated_SNPs_78622 0 0 0 0 1 PDE6B chr4:651283 5'GT 651283 Upstream 34bp
chr15 66838995 66838995 1 + G T UCEC 66838993 + 66838973 66839013 41 TTCTTTACTAACATGGTTACCTGCAGCCAGGTGCATTTCAA TTCTTTACTAACATGGTTACCTTCAGCCAGGTGCATTTCAA < 41bp 0.724654812663809 0.399429572716276 0.09735197 0.04807791 prediction 0.449309625327619 Functional Loss - ZWILCH ENSG00000174442 CDS Human protein_coding chr15:66838993 chr15:66838995 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_78623 0 0 1 0 1 ZWILCH chr15:66838929 3'AG 66838929 Downstream 67bp
chr9 138415739 138415739 1 + C T rs373239623 138415737 + 138415717 138415757 41 TTTCTGCAGACGGGGGCAAGCACGTGGCATACATCATCAGG TTTCTGCAGACGGGGGCAAGCATGTGGCATACATCATCAGG < 41bp 0.724652212303571 0.479387280878672 0.25098622 0.21366704 prediction 0.449304424607141 Functional Loss - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415737 chr9:138415739 synonymous SNV . 0 23 hm5C_associated_SNPs_78625 0 0 0 0 3 LCN1 chr9:138415726 3'AG 138415726 Downstream 14bp
chr9 138415739 138415739 1 + C T rs373239623 138415737 + 138415717 138415757 41 TTTCTGCAGACGGGGGCAAGCACGTGGCATACATCATCAGG TTTCTGCAGACGGGGGCAAGCATGTGGCATACATCATCAGG < 41bp 0.724652212303571 0.479387280878672 0.25098622 0.21366704 prediction 0.449304424607141 Functional Loss - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415737 chr9:138415739 synonymous SNV . 0 23 hm5C_associated_SNPs_78625 0 0 0 0 3 LCN1 chr9:138415823 5'GT 138415823 Upstream 85bp
chr9 138415739 138415739 1 + C T rs373239623 138415737 + 138415717 138415757 41 TTTCTGCAGACGGGGGCAAGCACGTGGCATACATCATCAGG TTTCTGCAGACGGGGGCAAGCATGTGGCATACATCATCAGG < 41bp 0.724652212303571 0.479387280878672 0.25098622 0.21366704 prediction 0.449304424607141 Functional Loss - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415737 chr9:138415739 synonymous SNV . 0 23 hm5C_associated_SNPs_78625 0 0 0 0 3 LCN1 chr9:138415836 5'GT 138415836 Upstream 98bp
chr9 138415740 138415740 1 + G A rs55884352 138415737 + 138415717 138415757 41 TTTCTGCAGACGGGGGCAAGCACGTGGCATACATCATCAGG TTTCTGCAGACGGGGGCAAGCACATGGCATACATCATCAGG < 41bp 0.724652212303571 0.483901352828263 0.25098622 0.30293015 prediction 0.449304424607141 Functional Loss - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415737 chr9:138415740 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_78626 0 0 0 0 3 LCN1 chr9:138415726 3'AG 138415726 Downstream 15bp
chr9 138415740 138415740 1 + G A rs55884352 138415737 + 138415717 138415757 41 TTTCTGCAGACGGGGGCAAGCACGTGGCATACATCATCAGG TTTCTGCAGACGGGGGCAAGCACATGGCATACATCATCAGG < 41bp 0.724652212303571 0.483901352828263 0.25098622 0.30293015 prediction 0.449304424607141 Functional Loss - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415737 chr9:138415740 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_78626 0 0 0 0 3 LCN1 chr9:138415823 5'GT 138415823 Upstream 84bp
chr9 138415740 138415740 1 + G A rs55884352 138415737 + 138415717 138415757 41 TTTCTGCAGACGGGGGCAAGCACGTGGCATACATCATCAGG TTTCTGCAGACGGGGGCAAGCACATGGCATACATCATCAGG < 41bp 0.724652212303571 0.483901352828263 0.25098622 0.30293015 prediction 0.449304424607141 Functional Loss - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415737 chr9:138415740 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_78626 0 0 0 0 3 LCN1 chr9:138415836 5'GT 138415836 Upstream 97bp
chr10 82329986 82329986 1 + T C DLBC 82329985 + 82329965 82330005 41 CTGGATCATGGGAGAAGGCCCTGGTGACAAGCCCTACGAAG CTGGATCATGGGAGAAGGCCCCGGTGACAAGCCCTACGAAG < 41bp 0.764532386748665 0.539880757447019 0.40696967 0.8683075 prediction 0.449303258603293 Functional Loss - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82329985 chr10:82329986 synonymous SNV . 0 22 hm5C_associated_SNPs_78627 0 0 0 0 2 SH2D4B chr10:82329910 3'AG 82329910 Downstream 77bp
chr10 82329986 82329986 1 + T C DLBC 82329985 + 82329965 82330005 41 CTGGATCATGGGAGAAGGCCCTGGTGACAAGCCCTACGAAG CTGGATCATGGGAGAAGGCCCCGGTGACAAGCCCTACGAAG < 41bp 0.764532386748665 0.539880757447019 0.40696967 0.8683075 prediction 0.449303258603293 Functional Loss - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82329985 chr10:82329986 synonymous SNV . 0 22 hm5C_associated_SNPs_78627 0 0 0 0 2 SH2D4B chr10:82330072 5'GT 82330072 Upstream 87bp
chrX 14599350 14599350 1 + C T UCEC 14599348 + 14599328 14599368 41 GAGACAACAGTGGAATGATTCACGGCTGGCGTACAGTGAGT GAGACAACAGTGGAATGATTCATGGCTGGCGTACAGTGAGT < 41bp 0.724647232938757 0.443656794618064 0.32553604 0.3347234 prediction 0.449294465877513 Functional Loss - GLRA2 ENSG00000101958 CDS Human protein_coding chrX:14599348 chrX:14599350 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_78630 0 0 0 0 1 GLRA2 chrX:14599305 3'AG 14599305 Downstream 46bp
chr7 142481804 142481804 1 + G T LUAD 142481802 + 142481782 142481822 41 ACCCAGATGAGCTGCAGTGCCTGGACGCTCCTGTGCTGACC ACCCAGATGAGCTGCAGTGCCTTGACGCTCCTGTGCTGACC < 41bp 0.891690548616872 0.667047385605137 0.68926716 0.15111405 prediction 0.44928632602347 Functional Loss - PRSS3P2 ENSG00000250606 ncRNA_exonic Human other chr7:142481802 chr7:142481804 . . 0 23 hm5C_associated_SNPs_78633 0 0 0 0 1 PRSS3P2 chr7:142481776 3'AG 142481776 Downstream 29bp
chr9 101908873 101908873 1 + C T BLCA 101908871 + 101908851 101908891 41 CTTAGTATTCTGGGAAATTGCTCGACGATGTTCCATTGGTG CTTAGTATTCTGGGAAATTGCTTGACGATGTTCCATTGGTG < 41bp 0.860470890988192 0.635828133554668 0.21009803 0.07732993 prediction 0.449285514867048 Functional Loss - TGFBR1 ENSG00000106799 CDS Human protein_coding chr9:101908871 chr9:101908873 stopgain 0.998 1 23 hm5C_associated_SNPs_78634 0 0 0 0 1 TGFBR1 chr9:101908891 5'GT 101908891 Upstream 19bp
chr6 161519333 161519333 1 + C T COAD 161519331 + 161519311 161519351 41 ACTCGGAGCATGCCTTCCGACGCGCGGAGCCATGGCAGCCC ACTCGGAGCATGCCTTCCGACGTGCGGAGCCATGGCAGCCC < 41bp 0.724641977285359 0.449238531450714 0.3281934 0.6243142 prediction 0.449283954570718 Functional Loss - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161519331 chr6:161519333 nonsynonymous SNV 0.027 0 23 hm5C_associated_SNPs_78635 0 0 1 0 1 MAP3K4 chr6:161519310 3'AG 161519310 Downstream 24bp
chr7 73457475 73457475 1 + G A CESC 73457472 + 73457452 73457492 41 GGTGGTTCCTCAGCCTGGAGCCGGAGTGAAGCCTGGGAAAG GGTGGTTCCTCAGCCTGGAGCCGAAGTGAAGCCTGGGAAAG < 41bp 0.754578936488187 0.529939201324427 0.8648759 0.6855423 prediction 0.44927947032752 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73457472 chr7:73457475 nonsynonymous SNV 0.943 1 24 hm5C_associated_SNPs_78638 0 0 0 0 3 ELN chr7:73457433 3'AG 73457433 Downstream 43bp
chr7 73457475 73457475 1 + G A CESC 73457472 + 73457452 73457492 41 GGTGGTTCCTCAGCCTGGAGCCGGAGTGAAGCCTGGGAAAG GGTGGTTCCTCAGCCTGGAGCCGAAGTGAAGCCTGGGAAAG < 41bp 0.754578936488187 0.529939201324427 0.8648759 0.6855423 prediction 0.44927947032752 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73457472 chr7:73457475 nonsynonymous SNV 0.943 1 24 hm5C_associated_SNPs_78638 0 0 0 0 3 ELN chr7:73457448 3'AG 73457448 Downstream 28bp
chr7 73457475 73457475 1 + G A CESC 73457472 + 73457452 73457492 41 GGTGGTTCCTCAGCCTGGAGCCGGAGTGAAGCCTGGGAAAG GGTGGTTCCTCAGCCTGGAGCCGAAGTGAAGCCTGGGAAAG < 41bp 0.754578936488187 0.529939201324427 0.8648759 0.6855423 prediction 0.44927947032752 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73457472 chr7:73457475 nonsynonymous SNV 0.943 1 24 hm5C_associated_SNPs_78638 0 0 0 0 3 ELN chr7:73457498 5'GT 73457498 Upstream 24bp
chr2 113405310 113405310 1 + C T SKCM 113405307 + 113405287 113405327 41 TCCTGGTTCGTGCATTCATCCTCCATAAGGTAACCTTTCTC TCCTGGTTCGTGCATTCATCCTCTATAAGGTAACCTTTCTC < 41bp 0.724638884138932 0.495619242814699 0.9657755 0.94101036 prediction 0.449277768277865 Functional Loss - SLC20A1 ENSG00000144136 CDS Human protein_coding chr2:113405307 chr2:113405310 nonsynonymous SNV 0.988 2 24 hm5C_associated_SNPs_78639 0 0 1 0 2 SLC20A1 chr2:113405230 3'AG 113405230 Downstream 81bp
chr2 113405310 113405310 1 + C T SKCM 113405307 + 113405287 113405327 41 TCCTGGTTCGTGCATTCATCCTCCATAAGGTAACCTTTCTC TCCTGGTTCGTGCATTCATCCTCTATAAGGTAACCTTTCTC < 41bp 0.724638884138932 0.495619242814699 0.9657755 0.94101036 prediction 0.449277768277865 Functional Loss - SLC20A1 ENSG00000144136 CDS Human protein_coding chr2:113405307 chr2:113405310 nonsynonymous SNV 0.988 2 24 hm5C_associated_SNPs_78639 0 0 1 0 2 SLC20A1 chr2:113405315 5'GT 113405315 Upstream 6bp
chr20 42089353 42089353 1 + C T PAAD 42089351 + 42089331 42089371 41 TTCCTTGTCCAGTTCCAGGTCGCGGAGCAAAGGTCGATCAC TTCCTTGTCCAGTTCCAGGTCGTGGAGCAAAGGTCGATCAC < 41bp 0.816745586906079 0.592107475252091 0.38903514 0.35729653 prediction 0.449276223307976 Functional Loss - SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089351 chr20:42089353 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_78641 0 0 1 0 1 SRSF6 chr20:42089343 3'AG 42089343 Downstream 11bp
chr19 17873612 17873612 1 + G A CESC 17873609 + 17873589 17873629 41 TTTGAGGTCCTGTACCACAGCGTGAAGCAGGGGCCCATCTC TTTGAGGTCCTGTACCACAGCGTAAAGCAGGGGCCCATCTC < 41bp 0.783831503100094 0.559194463847252 0.19908205 0.12752941 prediction 0.449274078505685 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17873609 chr19:17873612 synonymous SNV . 0 24 hm5C_associated_SNPs_78642 0 0 1 0 2 FCHO1 chr19:17873571 3'AG 17873571 Downstream 42bp
chr19 17873612 17873612 1 + G A CESC 17873609 + 17873589 17873629 41 TTTGAGGTCCTGTACCACAGCGTGAAGCAGGGGCCCATCTC TTTGAGGTCCTGTACCACAGCGTAAAGCAGGGGCCCATCTC < 41bp 0.783831503100094 0.559194463847252 0.19908205 0.12752941 prediction 0.449274078505685 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17873609 chr19:17873612 synonymous SNV . 0 24 hm5C_associated_SNPs_78642 0 0 1 0 2 FCHO1 chr19:17873662 5'GT 17873662 Upstream 51bp
chr2 27373165 27373165 1 + G A BLCA 27373162 + 27373142 27373182 41 TAGCCCACCTCACCCGCACACTCGGCCACGAGTTGCCTGGC TAGCCCACCTCACCCGCACACTCAGCCACGAGTTGCCTGGC < 41bp 0.78992705909301 0.565300548238809 0.067049354 0.049343556 prediction 0.449253021708402 Functional Loss - TCF23 ENSG00000163792 CDS Human protein_coding chr2:27373162 chr2:27373165 nonsynonymous SNV 0.063 3 24 hm5C_associated_SNPs_78649 0 0 0 0 1 TCF23 chr2:27373233 5'GT 27373233 Upstream 69bp
chr1 151261143 151261143 1 + G T LUAD 151261141 + 151261121 151261161 41 GCCAATTTTCAGACCCATCTCCGGGAGGCCTGTCTGCACGT GCCAATTTTCAGACCCATCTCCTGGAGGCCTGTCTGCACGT < 41bp 0.724624038984135 0.369565254075652 0.9332323 0.20132646 prediction 0.44924807796827 Functional Loss - ZNF687 ENSG00000143373 CDS Human protein_coding chr1:151261141 chr1:151261143 nonsynonymous SNV 0.992 0 23 hm5C_associated_SNPs_78650 0 0 1 0 1 ZNF687 chr1:151261182 5'GT 151261182 Upstream 40bp
chr6 125569527 125569527 1 + G A LUAD 125569524 + 125569504 125569544 41 ATCAGCAAGAAGTTCGGAGACATGAGGTACTGTGGGAAAAT ATCAGCAAGAAGTTCGGAGACATAAGGTACTGTGGGAAAAT < 41bp 0.73606118714202 0.511438114073158 0.45326108 0.42533776 prediction 0.449246146137724 Functional Loss - TPD52L1 ENSG00000111907 CDS Human protein_coding chr6:125569524 chr6:125569527 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_78651 0 0 0 0 2 TPD52L1 chr6:125569428 3'AG 125569428 Downstream 100bp
chr6 125569527 125569527 1 + G A LUAD 125569524 + 125569504 125569544 41 ATCAGCAAGAAGTTCGGAGACATGAGGTACTGTGGGAAAAT ATCAGCAAGAAGTTCGGAGACATAAGGTACTGTGGGAAAAT < 41bp 0.73606118714202 0.511438114073158 0.45326108 0.42533776 prediction 0.449246146137724 Functional Loss - TPD52L1 ENSG00000111907 CDS Human protein_coding chr6:125569524 chr6:125569527 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_78651 0 0 0 0 2 TPD52L1 chr6:125569529 5'GT 125569529 Upstream 3bp
chr17 15641669 15641669 1 + A C SKCM 15641668 + 15641648 15641688 41 TCACTTTTGCTAGATATTGACAGAATCAAGTCCCAGAACCC TCACTTTTGCTAGATATTGACCGAATCAAGTCCCAGAACCC < 41bp 0.724619881533217 0.450006034126004 0.8000084 0.42346588 prediction 0.449239763066434 Functional Loss - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15641668 chr17:15641669 synonymous SNV . 0 22 hm5C_associated_SNPs_78653 0 0 1 1 2 TBC1D26 chr17:15641594 3'AG 15641594 Downstream 76bp
chr17 15641669 15641669 1 + A C SKCM 15641668 + 15641648 15641688 41 TCACTTTTGCTAGATATTGACAGAATCAAGTCCCAGAACCC TCACTTTTGCTAGATATTGACCGAATCAAGTCCCAGAACCC < 41bp 0.724619881533217 0.450006034126004 0.8000084 0.42346588 prediction 0.449239763066434 Functional Loss - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15641668 chr17:15641669 synonymous SNV . 0 22 hm5C_associated_SNPs_78653 0 0 1 1 2 TBC1D26 chr17:15641701 5'GT 15641701 Upstream 33bp
chr16 53907748 53907748 1 + C T STAD 53907746 + 53907726 53907766 41 TGTTTTGGCCGGTTCACAACCTCGGTTTAGTTCCACCCACC TGTTTTGGCCGGTTCACAACCTTGGTTTAGTTCCACCCACC < 41bp 0.841954018569811 0.617337752966254 0.5712589 0.75920904 prediction 0.449232531207113 Functional Loss - FTO ENSG00000140718 CDS Human protein_coding chr16:53907746 chr16:53907748 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_78654 0 0 1 0 2 FTO chr16:53907698 3'AG 53907698 Downstream 51bp
chr16 53907748 53907748 1 + C T STAD 53907746 + 53907726 53907766 41 TGTTTTGGCCGGTTCACAACCTCGGTTTAGTTCCACCCACC TGTTTTGGCCGGTTCACAACCTTGGTTTAGTTCCACCCACC < 41bp 0.841954018569811 0.617337752966254 0.5712589 0.75920904 prediction 0.449232531207113 Functional Loss - FTO ENSG00000140718 CDS Human protein_coding chr16:53907746 chr16:53907748 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_78654 0 0 1 0 2 FTO chr16:53907777 5'GT 53907777 Upstream 30bp
chr5 141309289 141309289 1 + G T UCEC 141309287 + 141309267 141309307 41 CTTTGAGAGGAGCTCGTCCTCAGGACCCCTCTGAGGAAGGT CTTTGAGAGGAGCTCGTCCTCATGACCCCTCTGAGGAAGGT < 41bp 0.908038363704301 0.683422317628662 0.86910546 0.12486121 prediction 0.449232092151278 Functional Loss - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141309287 chr5:141309289 nonsynonymous SNV 0.046 0 23 hm5C_associated_SNPs_78655 0 0 1 0 1 KIAA0141 chr5:141309305 5'GT 141309305 Upstream 17bp
chr16 67660551 67660551 1 + A C STAD 67660550 + 67660530 67660570 41 ATGAGCGCTATGCCCTCATCCAGCATCAGAAGTCACACAAG ATGAGCGCTATGCCCTCATCCCGCATCAGAAGTCACACAAG < 41bp 0.805938682322672 0.581324793352011 0.08473545 0.034614205 prediction 0.449227777941323 Functional Loss - CTCF ENSG00000102974 CDS Human protein_coding chr16:67660550 chr16:67660551 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_78657 0 0 1 0 2 CTCF chr16:67660458 3'AG 67660458 Downstream 94bp
chr16 67660551 67660551 1 + A C STAD 67660550 + 67660530 67660570 41 ATGAGCGCTATGCCCTCATCCAGCATCAGAAGTCACACAAG ATGAGCGCTATGCCCTCATCCCGCATCAGAAGTCACACAAG < 41bp 0.805938682322672 0.581324793352011 0.08473545 0.034614205 prediction 0.449227777941323 Functional Loss - CTCF ENSG00000102974 CDS Human protein_coding chr16:67660550 chr16:67660551 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_78657 0 0 1 0 2 CTCF chr16:67660618 5'GT 67660618 Upstream 68bp
chr19 578047 578047 1 + C T UCEC 578045 + 578025 578065 41 GAGTGCCGGGCCAGCAACGACCCGGATCGCAACCACCTGAC GAGTGCCGGGCCAGCAACGACCTGGATCGCAACCACCTGAC < 41bp 0.765984371822172 0.541370778685671 0.76337886 0.5375159 prediction 0.449227186273003 Functional Loss - BSG ENSG00000172270 CDS Human protein_coding chr19:578045 chr19:578047 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_78658 0 0 0 0 1 BSG chr19:578121 5'GT 578121 Upstream 75bp
chr19 34973476 34973476 1 + G A rs8107479 34973473 + 34973453 34973493 41 GAGGGCGGCCCAAGCGCGGCCGAGCGGCGGCTGGAGGCGCT GAGGGCGGCCCAAGCGCGGCCGAACGGCGGCTGGAGGCGCT < 41bp 0.760249204873418 0.535637880071943 0.8729687 0.7329504 prediction 0.449222649602949 Functional Loss - WTIP ENSG00000142279 CDS Human protein_coding chr19:34973473 chr19:34973476 synonymous SNV . 0 24 hm5C_associated_SNPs_78659 0 0 0 0 1 WTIP chr19:34973546 5'GT 34973546 Upstream 71bp
chr16 2282320 2282320 1 + G T UCEC 2282317 + 2282297 2282337 41 CAGGTGAAGCTACTGGTGAACAAGGATGGCCGCTATGTGTG CAGGTGAAGCTACTGGTGAACAATGATGGCCGCTATGTGTG < 41bp 0.724607350917773 0.407336069579663 0.45020735 0.21139547 prediction 0.449214701835547 Functional Loss - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2282317 chr16:2282320 nonsynonymous SNV 0.994 0 24 hm5C_associated_SNPs_78662 0 0 1 0 1 E4F1 chr16:2282365 5'GT 2282365 Upstream 46bp
chr17 45360730 45360730 1 + T C rs5918 45360729 + 45360709 45360749 41 CTGTCTTACAGGCCCTGCCTCTGGGCTCACCTCGCTGTGAC CTGTCTTACAGGCCCTGCCTCCGGGCTCACCTCGCTGTGAC < 41bp 0.778110454208838 0.553505227249273 0.91168326 0.922824 prediction 0.449210453919131 Functional Loss - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45360729 chr17:45360730 nonsynonymous SNV 0.210 1 22 hm5C_associated_SNPs_78663 7 0 0 0 1 ITGB3 chr17:45360720 3'AG 45360720 Downstream 11bp
chr9 127990287 127990287 1 + G A BLCA 127990284 + 127990264 127990304 41 CAGGGACAAAGCTCTTCATCCACGGAGGCTTGGCGGGGGAC CAGGGACAAAGCTCTTCATCCACAGAGGCTTGGCGGGGGAC < 41bp 0.77174864597634 0.547150198849297 0.85016537 0.2088368 prediction 0.449196894254085 Functional Loss - RABEPK ENSG00000136933 CDS Human protein_coding chr9:127990284 chr9:127990287 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_78665 0 0 1 0 2 RABEPK chr9:127990189 3'AG 127990189 Downstream 99bp
chr9 127990287 127990287 1 + G A BLCA 127990284 + 127990264 127990304 41 CAGGGACAAAGCTCTTCATCCACGGAGGCTTGGCGGGGGAC CAGGGACAAAGCTCTTCATCCACAGAGGCTTGGCGGGGGAC < 41bp 0.77174864597634 0.547150198849297 0.85016537 0.2088368 prediction 0.449196894254085 Functional Loss - RABEPK ENSG00000136933 CDS Human protein_coding chr9:127990284 chr9:127990287 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_78665 0 0 1 0 2 RABEPK chr9:127990338 5'GT 127990338 Upstream 52bp
chr3 43345197 43345197 1 + G T UCEC 43345195 + 43345175 43345215 41 GTTCAGCAACAAATTTCAACCAGGGAAGAAGCTCACTACAA GTTCAGCAACAAATTTCAACCATGGAAGAAGCTCACTACAA < 41bp 0.724592615647324 0.390874756767828 0.93641424 0.32172996 prediction 0.449185231294648 Functional Loss - SNRK ENSG00000163788 CDS Human protein_coding chr3:43345195 chr3:43345197 nonsynonymous SNV 0.995 5 23 hm5C_associated_SNPs_78668 0 0 1 0 1 SNRK chr3:43345284 5'GT 43345284 Upstream 88bp
chr19 51671531 51671531 1 + C T SKCM 51671529 + 51671509 51671549 41 CTCAGTGCTCACGATCATCCCACGGCCTCAGGACCACGGCA CTCAGTGCTCACGATCATCCCATGGCCTCAGGACCACGGCA < 41bp 0.746192280417095 0.521611871193495 0.41644457 0.44933924 prediction 0.4491608184472 Functional Loss - SIGLEC17P ENSG00000171101 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:51671529 chr19:51671531 . . 0 23 hm5C_associated_SNPs_78673 0 0 0 0 1 SIGLEC17P chr19:51671624 5'GT 51671624 Upstream 94bp
chr1 35852806 35852806 1 + G A UCEC 35852803 + 35852783 35852823 41 GTCCCAGCATGTTGGGTTTGCACGAAGTGTTGTGAAACTCA GTCCCAGCATGTTGGGTTTGCACAAAGTGTTGTGAAACTCA < 41bp 0.749726365386675 0.525158090120293 0.1171951 0.07251316 prediction 0.449136550532765 Functional Loss - ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35852803 chr1:35852806 nonsynonymous SNV 0.988 0 24 hm5C_associated_SNPs_78676 0 0 1 0 1 ZMYM4 chr1:35852879 5'GT 35852879 Upstream 74bp
chr17 33330062 33330062 1 + A C rs146403625 33330058 + 33330038 33330078 41 GGAAGAACTGTGCCAGCAGGCAGGAGATAGAACAGCCCGGC GGAAGAACTGTGCCAGCAGGCAGGCGATAGAACAGCCCGGC < 41bp 0.925097115711702 0.700528895701176 0.92112267 0.91587013 prediction 0.449136440021051 Functional Loss - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33330058 chr17:33330062 synonymous SNV . 0 25 hm5C_associated_SNPs_78677 0 0 0 0 1 LIG3 chr17:33330014 3'AG 33330014 Downstream 49bp
chr4 25316954 25316954 1 + A C COAD 25316950 + 25316930 25316970 41 TCTCTTTCAGTTGTCAGGAGCTAGACTTGCTGCCCGAGAAG TCTCTTTCAGTTGTCAGGAGCTAGCCTTGCTGCCCGAGAAG < 41bp 0.724565765814314 0.316193583973332 0.7348479 0.34940618 prediction 0.449131531628629 Functional Loss - ZCCHC4 ENSG00000168228 CDS Human protein_coding chr4:25316950 chr4:25316954 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_78678 0 0 1 0 2 ZCCHC4 chr4:25316940 3'AG 25316940 Downstream 15bp
chr4 25316954 25316954 1 + A C COAD 25316950 + 25316930 25316970 41 TCTCTTTCAGTTGTCAGGAGCTAGACTTGCTGCCCGAGAAG TCTCTTTCAGTTGTCAGGAGCTAGCCTTGCTGCCCGAGAAG < 41bp 0.724565765814314 0.316193583973332 0.7348479 0.34940618 prediction 0.449131531628629 Functional Loss - ZCCHC4 ENSG00000168228 CDS Human protein_coding chr4:25316950 chr4:25316954 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_78678 0 0 1 0 2 ZCCHC4 chr4:25317022 5'GT 25317022 Upstream 69bp
chr19 51294975 51294975 1 + G A STAD 51294972 + 51294952 51294992 41 AGTGCCCAGGCCAACCTTGCCGGGCTGTTTCCCGAGGCTGC AGTGCCCAGGCCAACCTTGCCGGACTGTTTCCCGAGGCTGC < 41bp 0.777407695680316 0.552843610579513 0.91363883 0.7637582 prediction 0.449128170201605 Functional Loss - ACPT ENSG00000142513 CDS Human protein_coding chr19:51294972 chr19:51294975 synonymous SNV . 0 24 hm5C_associated_SNPs_78679 0 0 0 0 2 ACPT chr19:51294913 3'AG 51294913 Downstream 63bp
chr19 51294975 51294975 1 + G A STAD 51294972 + 51294952 51294992 41 AGTGCCCAGGCCAACCTTGCCGGGCTGTTTCCCGAGGCTGC AGTGCCCAGGCCAACCTTGCCGGACTGTTTCCCGAGGCTGC < 41bp 0.777407695680316 0.552843610579513 0.91363883 0.7637582 prediction 0.449128170201605 Functional Loss - ACPT ENSG00000142513 CDS Human protein_coding chr19:51294972 chr19:51294975 synonymous SNV . 0 24 hm5C_associated_SNPs_78679 0 0 0 0 2 ACPT chr19:51295059 5'GT 51295059 Upstream 85bp
chr14 100344863 100344863 1 + G A BLCA 100344860 + 100344840 100344880 41 CTCTTCTGAACGAGTGTCTCCTGGGGGTCGAAGGGAAAGCA CTCTTCTGAACGAGTGTCTCCTGAGGGTCGAAGGGAAAGCA < 41bp 0.724559516131492 0.481789810388157 0.89366716 0.63522625 prediction 0.449119032262983 Functional Loss - EML1 ENSG00000066629 CDS Human protein_coding chr14:100344860 chr14:100344863 nonsynonymous SNV 0.075 1 24 hm5C_associated_SNPs_78681 0 0 1 0 2 EML1 chr14:100344822 3'AG 100344822 Downstream 42bp
chr14 100344863 100344863 1 + G A BLCA 100344860 + 100344840 100344880 41 CTCTTCTGAACGAGTGTCTCCTGGGGGTCGAAGGGAAAGCA CTCTTCTGAACGAGTGTCTCCTGAGGGTCGAAGGGAAAGCA < 41bp 0.724559516131492 0.481789810388157 0.89366716 0.63522625 prediction 0.449119032262983 Functional Loss - EML1 ENSG00000066629 CDS Human protein_coding chr14:100344860 chr14:100344863 nonsynonymous SNV 0.075 1 24 hm5C_associated_SNPs_78681 0 0 1 0 2 EML1 chr14:100344956 5'GT 100344956 Upstream 94bp
chr18 12009902 12009902 1 + C T COAD 12009900 + 12009880 12009920 41 AGGTTCATTGCAGAAGAGGCCGCGGCTTCTGGGGCCAAGTG AGGTTCATTGCAGAAGAGGCCGTGGCTTCTGGGGCCAAGTG < 41bp 0.724554813019955 0.454916948463912 0.7850962 0.28412363 prediction 0.449109626039909 Functional Loss - IMPA2 ENSG00000141401 CDS Human protein_coding chr18:12009900 chr18:12009902 nonsynonymous SNV 0.266 0 23 hm5C_associated_SNPs_78683 0 0 1 0 2 IMPA2 chr18:12009882 3'AG 12009882 Downstream 21bp
chr18 12009902 12009902 1 + C T COAD 12009900 + 12009880 12009920 41 AGGTTCATTGCAGAAGAGGCCGCGGCTTCTGGGGCCAAGTG AGGTTCATTGCAGAAGAGGCCGTGGCTTCTGGGGCCAAGTG < 41bp 0.724554813019955 0.454916948463912 0.7850962 0.28412363 prediction 0.449109626039909 Functional Loss - IMPA2 ENSG00000141401 CDS Human protein_coding chr18:12009900 chr18:12009902 nonsynonymous SNV 0.266 0 23 hm5C_associated_SNPs_78683 0 0 1 0 2 IMPA2 chr18:12009986 5'GT 12009986 Upstream 85bp
chr17 6927588 6927588 1 + C T STAD 6927586 + 6927566 6927606 41 CCACCTATTTGCAGATGGAGCACGTGGTCCAGGCATGCCAC CCACCTATTTGCAGATGGAGCATGTGGTCCAGGCATGCCAC < 41bp 0.724554552874825 0.465947267371771 0.19850999 0.10041234 prediction 0.44910910574965 Functional Loss - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6927586 chr17:6927588 synonymous SNV . 0 23 hm5C_associated_SNPs_78684 0 0 0 0 1 BCL6B chr17:6927623 5'GT 6927623 Upstream 36bp
chr16 25238413 25238413 1 + G A SKCM 25238410 + 25238390 25238430 41 GGCCCTGTGTCTGGAGGCTGCATGAATCCCGCCCGTGCTTT GGCCCTGTGTCTGGAGGCTGCATAAATCCCGCCCGTGCTTT < 41bp 0.72455452551862 0.479737088020795 0.21338552 0.07788363 prediction 0.449109051037239 Functional Loss - AQP8 ENSG00000103375 CDS Human protein_coding chr16:25238410 chr16:25238413 nonsynonymous SNV 0.991 3 24 hm5C_associated_SNPs_78685 0 0 0 0 1 AQP8 chr16:25238389 3'AG 25238389 Downstream 25bp
chr2 113832808 113832808 1 + C T UCEC 113832806 + 113832786 113832826 41 TTCCAGAGCAGCTCAGGCTCCGCCTTCAGGCTTGAGGCTGC TTCCAGAGCAGCTCAGGCTCCGTCTTCAGGCTTGAGGCTGC < 41bp 0.724550850768258 0.458904691484867 0.10186121 0.04077363 prediction 0.449101701536515 Functional Loss - IL1F10 ENSG00000136697 CDS Human protein_coding chr2:113832806 chr2:113832808 nonsynonymous SNV 0.403 0 23 hm5C_associated_SNPs_78686 0 0 0 0 1 IL1F10 chr2:113832729 3'AG 113832729 Downstream 80bp
chr6 35782371 35782371 1 + C T BLCA 35782369 + 35782349 35782389 41 GTCTACCCTGATGGTTGGGACTCAAGTGAGGTGCGGCGCAT GTCTACCCTGATGGTTGGGACTTAAGTGAGGTGCGGCGCAT < 41bp 0.85352910931243 0.62898121682345 0.68706536 0.27339494 prediction 0.449095784977959 Functional Loss - LHFPL5 ENSG00000197753 CDS Human protein_coding chr6:35782369 chr6:35782371 nonsynonymous SNV 0.980 2 23 hm5C_associated_SNPs_78690 0 0 0 0 1 LHFPL5 chr6:35782323 3'AG 35782323 Downstream 49bp
chr1 87797721 87797721 1 + C T BLCA 87797719 + 87797699 87797739 41 ATGGTGAATCCGGGCAGCAGCTCGCAGCCGCCCCCGGTGAC ATGGTGAATCCGGGCAGCAGCTTGCAGCCGCCCCCGGTGAC < 41bp 0.828435351597492 0.603890275817388 0.41073096 0.4390444 prediction 0.449090151560208 Functional Loss - LMO4 ENSG00000143013 CDS Human protein_coding chr1:87797719 chr1:87797721 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_78692 0 0 1 0 1 LMO4 chr1:87797696 3'AG 87797696 Downstream 26bp
chr11 118516456 118516456 1 + G A UCEC 118516453 + 118516433 118516473 41 TCTTCCCCTTCTCTCCCCAGCGCGAGTGGTCTGGACATGGG TCTTCCCCTTCTCTCCCCAGCGCAAGTGGTCTGGACATGGG < 41bp 0.753172711529246 0.528628983191115 0.3602613 0.3388313 prediction 0.449087456676261 Functional Loss - PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118516453 chr11:118516456 synonymous SNV . 0 24 hm5C_associated_SNPs_78694 0 0 1 0 1 PHLDB1 chr11:118516453 3'AG 118516453 Downstream 4bp
chr6 155561811 155561811 1 + G A SKCM 155561808 + 155561788 155561828 41 ACCGCCTCCGCAAAGTCATCCAGGAGCTTGTGGACACAGAG ACCGCCTCCGCAAAGTCATCCAGAAGCTTGTGGACACAGAG < 41bp 0.758845417647542 0.534303050782736 0.35009778 0.17134646 prediction 0.449084733729611 Functional Loss - TIAM2 ENSG00000146426 CDS Human protein_coding chr6:155561808 chr6:155561811 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_78695 0 0 0 0 1 TIAM2 chr6:155561843 5'GT 155561843 Upstream 33bp
chr8 39871158 39871158 1 + G T SARC 39871156 + 39871136 39871176 41 CAAGAGCCCCTGAAATACTCCGGCGGGAGTGCAGCTCAGAG CAAGAGCCCCTGAAATACTCCGTCGGGAGTGCAGCTCAGAG < 41bp 0.72454121180755 0.370128861579965 0.8051791 0.14431801 prediction 0.449082423615101 Functional Loss - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39871156 chr8:39871158 nonsynonymous SNV 0.014 5 23 hm5C_associated_SNPs_78696 0 0 0 0 2 IDO2 chr8:39871084 3'AG 39871084 Downstream 75bp
chr8 39871158 39871158 1 + G T SARC 39871156 + 39871136 39871176 41 CAAGAGCCCCTGAAATACTCCGGCGGGAGTGCAGCTCAGAG CAAGAGCCCCTGAAATACTCCGTCGGGAGTGCAGCTCAGAG < 41bp 0.72454121180755 0.370128861579965 0.8051791 0.14431801 prediction 0.449082423615101 Functional Loss - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39871156 chr8:39871158 nonsynonymous SNV 0.014 5 23 hm5C_associated_SNPs_78696 0 0 0 0 2 IDO2 chr8:39871232 5'GT 39871232 Upstream 75bp
chr17 2808601 2808601 1 + C T STAD 2808599 + 2808579 2808619 41 AAGCAGGAGCTGGCCAACAGCTCGGATGCGACCCTCCCAGA AAGCAGGAGCTGGCCAACAGCTTGGATGCGACCCTCCCAGA < 41bp 0.831549779385641 0.607009665023118 0.2796 0.22546169 prediction 0.449080228725047 Functional Loss - RAP1GAP2 ENSG00000132359 CDS Human protein_coding chr17:2808599 chr17:2808601 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_78697 0 0 0 0 2 RAP1GAP2 chr17:2808578 3'AG 2808578 Downstream 24bp
chr17 2808601 2808601 1 + C T STAD 2808599 + 2808579 2808619 41 AAGCAGGAGCTGGCCAACAGCTCGGATGCGACCCTCCCAGA AAGCAGGAGCTGGCCAACAGCTTGGATGCGACCCTCCCAGA < 41bp 0.831549779385641 0.607009665023118 0.2796 0.22546169 prediction 0.449080228725047 Functional Loss - RAP1GAP2 ENSG00000132359 CDS Human protein_coding chr17:2808599 chr17:2808601 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_78697 0 0 0 0 2 RAP1GAP2 chr17:2808662 5'GT 2808662 Upstream 62bp
chr16 20430608 20430608 1 + G T THYM 20430606 + 20430586 20430626 41 AGAAGGACCTCAAGTACCGGCTGCAGGCGTCCAGGGCCAAG AGAAGGACCTCAAGTACCGGCTTCAGGCGTCCAGGGCCAAG < 41bp 0.724535716735904 0.380701245226981 0.12695628 0.07891995 prediction 0.449071433471809 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20430606 chr16:20430608 synonymous SNV . 0 23 hm5C_associated_SNPs_78698 0 0 1 0 1 ACSM5 chr16:20430550 3'AG 20430550 Downstream 59bp
chr12 520947 520947 1 + A C rs4980895 520946 + 520926 520966 41 TCCAAACGTGGTGTTGCCGTCAGTGGTCCCACCAAGAGGAG TCCAAACGTGGTGTTGCCGTCCGTGGTCCCACCAAGAGGAG < 41bp 0.724535704798801 0.459463437880881 0.52174044 0.34024745 prediction 0.449071409597601 Functional Loss - CCDC77 ENSG00000120647 CDS Human protein_coding chr12:520946 chr12:520947 nonsynonymous SNV 0.013 1 22 hm5C_associated_SNPs_78699 0 0 1 0 1 CCDC77 chr12:520913 3'AG 520913 Downstream 35bp
chr16 58537758 58537758 1 + C T SKCM 58537756 + 58537736 58537776 41 ATGTAGTGATCCGGGGCTCCCCCAAGGGGAACCGCCCAGCC ATGTAGTGATCCGGGGCTCCCCTAAGGGGAACCGCCCAGCC < 41bp 0.724532159625697 0.44041679077082 0.40275374 0.40046647 prediction 0.449064319251394 Functional Loss - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58537756 chr16:58537758 synonymous SNV . 0 23 hm5C_associated_SNPs_78700 0 0 1 0 2 NDRG4 chr16:58537702 3'AG 58537702 Downstream 57bp
chr16 58537758 58537758 1 + C T SKCM 58537756 + 58537736 58537776 41 ATGTAGTGATCCGGGGCTCCCCCAAGGGGAACCGCCCAGCC ATGTAGTGATCCGGGGCTCCCCTAAGGGGAACCGCCCAGCC < 41bp 0.724532159625697 0.44041679077082 0.40275374 0.40046647 prediction 0.449064319251394 Functional Loss - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58537756 chr16:58537758 synonymous SNV . 0 23 hm5C_associated_SNPs_78700 0 0 1 0 2 NDRG4 chr16:58537807 5'GT 58537807 Upstream 50bp
chr2 74758723 74758723 1 + G T UCEC 74758721 + 74758701 74758741 41 AACTGGGGGCTGTATCCCTGCAGGATGGGGAGGTGATTGGA AACTGGGGGCTGTATCCCTGCATGATGGGGAGGTGATTGGA < 41bp 0.724527619988481 0.384951031698991 0.8593577 0.42319113 prediction 0.449055239976962 Functional Loss - HTRA2;HTRA2 ENSG00000115317;ENSG00000115317 exonic;splicing Human protein_coding chr2:74758721 chr2:74758723 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_78703 0 0 1 0 1 HTRA2 chr2:74758694 3'AG 74758694 Downstream 30bp
chr1 12157271 12157271 1 + C T BLCA 12157269 + 12157249 12157289 41 TACAGCCTGCGTGACTTGTTCTCGAGGTAAGGGCCTTGTTC TACAGCCTGCGTGACTTGTTCTTGAGGTAAGGGCCTTGTTC < 41bp 0.834720918059655 0.610193371032714 0.2517503 0.14509451 prediction 0.449055094053882 Functional Loss - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12157269 chr1:12157271 stopgain 0.018 0 23 hm5C_associated_SNPs_78704 0 0 0 0 1 TNFRSF8 chr1:12157274 5'GT 12157274 Upstream 4bp
chr19 14071304 14071304 1 + G A SKCM 14071301 + 14071281 14071321 41 AGTGTCTGGAGCTCCTACCGCAAGAGCTGCGTGGACATGGT AGTGTCTGGAGCTCCTACCGCAAAAGCTGCGTGGACATGGT < 41bp 0.778029615930608 0.55351041392541 0.4578951 0.21021307 prediction 0.449038404010396 Functional Loss - DCAF15 ENSG00000132017 CDS Human protein_coding chr19:14071301 chr19:14071304 synonymous SNV . 0 24 hm5C_associated_SNPs_78709 0 0 1 0 2 DCAF15 chr19:14071277 3'AG 14071277 Downstream 28bp
chr19 14071304 14071304 1 + G A SKCM 14071301 + 14071281 14071321 41 AGTGTCTGGAGCTCCTACCGCAAGAGCTGCGTGGACATGGT AGTGTCTGGAGCTCCTACCGCAAAAGCTGCGTGGACATGGT < 41bp 0.778029615930608 0.55351041392541 0.4578951 0.21021307 prediction 0.449038404010396 Functional Loss - DCAF15 ENSG00000132017 CDS Human protein_coding chr19:14071301 chr19:14071304 synonymous SNV . 0 24 hm5C_associated_SNPs_78709 0 0 1 0 2 DCAF15 chr19:14071392 5'GT 14071392 Upstream 89bp
chr13 113556661 113556661 1 + C T SKCM 113556659 + 113556639 113556679 41 CATCAGGCTTGTTCAAGACACACCGGAGGCGACGGCCATGG CATCAGGCTTGTTCAAGACACATCGGAGGCGACGGCCATGG < 41bp 0.768337176675645 0.543818023669503 0.055455893 0.07749832 prediction 0.449038306012284 Functional Loss - ATP11A;MCF2L-AS1 ENSG00000126217 CDS Human protein_coding chr13:113556659 chr13:113556661 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_78710 0 0 0 0 1 ATP11A;MCF2L-AS1 chr13:113556685 5'GT 113556685 Upstream 25bp
chr4 164271440 164271440 1 + C T ACC 164271438 + 164271418 164271458 41 ACTATAATATGGATTTAGAGCTCGACGAGTATTATAACAAG ACTATAATATGGATTTAGAGCTTGACGAGTATTATAACAAG < 41bp 0.823537511135659 0.599024543317434 0.027914852 0.027001143 prediction 0.449025935636451 Functional Loss - NPY5R ENSG00000164129 CDS Human protein_coding chr4:164271438 chr4:164271440 synonymous SNV . 0 23 hm5C_associated_SNPs_78715 0 0 0 0 1 NPY5R chr4:164271417 3'AG 164271417 Downstream 24bp
chr1 26873383 26873383 1 + C T SKCM 26873381 + 26873361 26873401 41 GAGGGCGTCCTCAAGGAGATCTCCATCACGCACCACGTCAA GAGGGCGTCCTCAAGGAGATCTTCATCACGCACCACGTCAA < 41bp 0.72451191904805 0.428972423276361 0.9597261 0.1258829 prediction 0.449023838096101 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26873381 chr1:26873383 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_78716 0 0 1 0 2 RPS6KA1 chr1:26873358 3'AG 26873358 Downstream 26bp
chr1 26873383 26873383 1 + C T SKCM 26873381 + 26873361 26873401 41 GAGGGCGTCCTCAAGGAGATCTCCATCACGCACCACGTCAA GAGGGCGTCCTCAAGGAGATCTTCATCACGCACCACGTCAA < 41bp 0.72451191904805 0.428972423276361 0.9597261 0.1258829 prediction 0.449023838096101 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26873381 chr1:26873383 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_78716 0 0 1 0 2 RPS6KA1 chr1:26873474 5'GT 26873474 Upstream 92bp
chr1 26873382 26873382 1 + T C SKCM 26873381 + 26873361 26873401 41 GAGGGCGTCCTCAAGGAGATCTCCATCACGCACCACGTCAA GAGGGCGTCCTCAAGGAGATCCCCATCACGCACCACGTCAA < 41bp 0.72451191904805 0.448050701048366 0.9597261 0.16445875 prediction 0.449023838096101 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26873381 chr1:26873382 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_78717 0 0 1 0 2 RPS6KA1 chr1:26873358 3'AG 26873358 Downstream 25bp
chr1 26873382 26873382 1 + T C SKCM 26873381 + 26873361 26873401 41 GAGGGCGTCCTCAAGGAGATCTCCATCACGCACCACGTCAA GAGGGCGTCCTCAAGGAGATCCCCATCACGCACCACGTCAA < 41bp 0.72451191904805 0.448050701048366 0.9597261 0.16445875 prediction 0.449023838096101 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26873381 chr1:26873382 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_78717 0 0 1 0 2 RPS6KA1 chr1:26873474 5'GT 26873474 Upstream 93bp
chr18 23724533 23724533 1 + G C LUSC 23724532 + 23724512 23724552 41 TGACTTGACAGGTCGGAATTCGAGGTACCAATATAGTTGTT TGACTTGACAGGTCGGAATTCCAGGTACCAATATAGTTGTT < 41bp 0.724509353808794 0.423264903973482 0.9061236 0.8773285 prediction 0.449018707617587 Functional Loss - PSMA8 ENSG00000154611 CDS Human protein_coding chr18:23724532 chr18:23724533 nonsynonymous SNV 0.987 4 22 hm5C_associated_SNPs_78720 0 0 0 0 2 PSMA8 chr18:23724523 3'AG 23724523 Downstream 11bp
chr18 23724533 23724533 1 + G C LUSC 23724532 + 23724512 23724552 41 TGACTTGACAGGTCGGAATTCGAGGTACCAATATAGTTGTT TGACTTGACAGGTCGGAATTCCAGGTACCAATATAGTTGTT < 41bp 0.724509353808794 0.423264903973482 0.9061236 0.8773285 prediction 0.449018707617587 Functional Loss - PSMA8 ENSG00000154611 CDS Human protein_coding chr18:23724532 chr18:23724533 nonsynonymous SNV 0.987 4 22 hm5C_associated_SNPs_78720 0 0 0 0 2 PSMA8 chr18:23724535 5'GT 23724535 Upstream 3bp
chr19 10398019 10398019 1 + G A KICH 10398016 + 10397996 10398036 41 ACGTGAGGGCCTGGAGCTCCCTCGCGCACTGCCTCGTGACC ACGTGAGGGCCTGGAGCTCCCTCACGCACTGCCTCGTGACC < 41bp 0.804615470972367 0.580106310206545 0.23757711 0.12083626 prediction 0.449018321531643 Functional Loss - ICAM4 ENSG00000105371 CDS Human protein_coding chr19:10398016 chr19:10398019 nonsynonymous SNV 0.012 1 24 hm5C_associated_SNPs_78721 0 0 1 0 1 ICAM4 chr19:10398082 5'GT 10398082 Upstream 64bp
chr21 41137739 41137739 1 + G T UCEC 41137736 + 41137716 41137756 41 GGGAACATCAGATGCAGCCTCCAGAACAGTCGCCTGCATGG GGGAACATCAGATGCAGCCTCCATAACAGTCGCCTGCATGG < 41bp 0.72450721390471 0.321664369047273 0.61957604 0.10335815 prediction 0.449014427809419 Functional Loss - IGSF5 ENSG00000183067 CDS Human protein_coding chr21:41137736 chr21:41137739 nonsynonymous SNV 0.988 3 24 hm5C_associated_SNPs_78722 0 0 0 0 1 IGSF5 chr21:41137779 5'GT 41137779 Upstream 41bp
chr1 17657546 17657546 1 + A C SKCM 17657545 + 17657525 17657565 41 ATTGCCCACGGCCCTCCAGCCAAGAAGAAATCCACAGGTTC ATTGCCCACGGCCCTCCAGCCCAGAAGAAATCCACAGGTTC < 41bp 0.837748350870461 0.613242268228349 0.9361243 0.83867836 prediction 0.449012165284224 Functional Loss - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17657545 chr1:17657546 nonsynonymous SNV 0.771 1 22 hm5C_associated_SNPs_78724 0 0 0 0 2 PADI4 chr1:17657464 3'AG 17657464 Downstream 83bp
chr1 17657546 17657546 1 + A C SKCM 17657545 + 17657525 17657565 41 ATTGCCCACGGCCCTCCAGCCAAGAAGAAATCCACAGGTTC ATTGCCCACGGCCCTCCAGCCCAGAAGAAATCCACAGGTTC < 41bp 0.837748350870461 0.613242268228349 0.9361243 0.83867836 prediction 0.449012165284224 Functional Loss - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17657545 chr1:17657546 nonsynonymous SNV 0.771 1 22 hm5C_associated_SNPs_78724 0 0 0 0 2 PADI4 chr1:17657644 5'GT 17657644 Upstream 99bp
chr20 4158194 4158194 1 + G A UCEC 4158191 + 4158171 4158211 41 GGCCGCAGGATCCCCAAGGACGTGGTTGAGGAATTCAGCGA GGCCGCAGGATCCCCAAGGACGTAGTTGAGGAATTCAGCGA < 41bp 0.775954054409317 0.551448768443371 0.7972969 0.45163366 prediction 0.449010571931892 Functional Loss - SMOX ENSG00000088826 CDS Human protein_coding chr20:4158191 chr20:4158194 synonymous SNV . 0 24 hm5C_associated_SNPs_78726 0 0 0 0 1 SMOX chr20:4158224 5'GT 4158224 Upstream 31bp
chr7 100197785 100197785 1 + G A UCEC 100197782 + 100197762 100197802 41 GCTGGGGGCCGCCTCCCAGGCTGGCCCAAGGGGAGTGCCTC GCTGGGGGCCGCCTCCCAGGCTGACCCAAGGGGAGTGCCTC < 41bp 0.772313861904522 0.547809229942831 0.26444885 0.14102992 prediction 0.449009263923382 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100197782 chr7:100197785 stopgain 0.993 1 24 hm5C_associated_SNPs_78727 0 0 0 0 1 FBXO24 chr7:100197824 5'GT 100197824 Upstream 40bp
chr19 763554 763554 1 + G T LIHC 763551 + 763531 763571 41 AAGAACGCCATGGCAGAGCGCTGGGAATCCCGCATCTACGC AAGAACGCCATGGCAGAGCGCTGTGAATCCCGCATCTACGC < 41bp 0.724503727048926 0.328205647333892 0.24812177 0.10758299 prediction 0.449007454097851 Functional Loss - MISP ENSG00000099812 CDS Human protein_coding chr19:763551 chr19:763554 nonsynonymous SNV 0.680 5 24 hm5C_associated_SNPs_78728 0 0 0 0 1 MISP chr19:763501 3'AG 763501 Downstream 54bp
chr19 56190155 56190155 1 + G A UCEC 56190152 + 56190132 56190172 41 ACCTACAACGTTGTCGCCTTCTCGGAGATCATGAGCATGAT ACCTACAACGTTGTCGCCTTCTCAGAGATCATGAGCATGAT < 41bp 0.761545224271067 0.537046234361959 0.14970618 0.04299563 prediction 0.448997979818216 Functional Loss - EPN1 ENSG00000063245 CDS Human protein_coding chr19:56190152 chr19:56190155 synonymous SNV . 0 24 hm5C_associated_SNPs_78730 0 0 1 0 1 EPN1 chr19:56190221 5'GT 56190221 Upstream 67bp
chr8 55047874 55047874 1 + C T SARC 55047872 + 55047852 55047892 41 TCCCTTGCAGGGCGGTGGGGCCCGGGCCCTGGACCTACTCC TCCCTTGCAGGGCGGTGGGGCCTGGGCCCTGGACCTACTCC < 41bp 0.729937993481141 0.505439242974594 0.5546411 0.48441756 prediction 0.448997501013094 Functional Loss - MRPL15 ENSG00000137547 CDS Human protein_coding chr8:55047872 chr8:55047874 nonsynonymous SNV 0.053 1 23 hm5C_associated_SNPs_78731 0 0 1 0 1 MRPL15 chr8:55047951 5'GT 55047951 Upstream 78bp
chr12 101880156 101880156 1 + C T UCEC 101880154 + 101880134 101880174 41 TCCGACTGTTTGAATACCTTCACGAATCCCTGTATAATCCG TCCGACTGTTTGAATACCTTCATGAATCCCTGTATAATCCG < 41bp 0.845764871978461 0.621268807845052 0.010502011 0.0159069 prediction 0.44899212826682 Functional Loss - SPIC ENSG00000166211 CDS Human protein_coding chr12:101880154 chr12:101880156 synonymous SNV . 0 23 hm5C_associated_SNPs_78735 0 0 0 0 1 SPIC chr12:101880122 3'AG 101880122 Downstream 35bp
chr11 122756812 122756812 1 + G T LUAD 122756810 + 122756790 122756830 41 AAAGCCCTCGATGGGGAAGCCTGCACGAGATGGAAGAGGAA AAAGCCCTCGATGGGGAAGCCTTCACGAGATGGAAGAGGAA < 41bp 0.72449247441828 0.37925013463272 0.43353993 0.5173643 prediction 0.448984948836561 Functional Loss - C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122756810 chr11:122756812 synonymous SNV . 0 23 hm5C_associated_SNPs_78737 0 0 0 0 1 C11orf63 chr11:122756901 5'GT 122756901 Upstream 90bp
chrX 119048789 119048789 1 + G A READ 119048786 + 119048766 119048806 41 AACTGCTGACCTACCCGTAGCACGAATCTCTGCTGGTACCT AACTGCTGACCTACCCGTAGCACAAATCTCTGCTGGTACCT < 41bp 0.790157298431574 0.565667012631909 0.23356712 0.15972626 prediction 0.448980571599329 Functional Loss - AKAP14 ENSG00000186471 CDS Human protein_coding chrX:119048786 chrX:119048789 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_78739 0 0 0 0 1 AKAP14 chrX:119048841 5'GT 119048841 Upstream 53bp
chr19 35556871 35556871 1 + G A GBM 35556868 + 35556848 35556888 41 GTTGGGGCACTGGCTGTGCCCTGGCCCAGAAGCCAGGCGTC GTTGGGGCACTGGCTGTGCCCTGACCCAGAAGCCAGGCGTC < 41bp 0.724488622125231 0.467735342989726 0.2575326 0.091026664 prediction 0.448977244250462 Functional Loss - HPN ENSG00000105707 CDS Human protein_coding chr19:35556868 chr19:35556871 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_78740 0 0 1 0 2 HPN chr19:35556772 3'AG 35556772 Downstream 100bp
chr19 35556871 35556871 1 + G A GBM 35556868 + 35556848 35556888 41 GTTGGGGCACTGGCTGTGCCCTGGCCCAGAAGCCAGGCGTC GTTGGGGCACTGGCTGTGCCCTGACCCAGAAGCCAGGCGTC < 41bp 0.724488622125231 0.467735342989726 0.2575326 0.091026664 prediction 0.448977244250462 Functional Loss - HPN ENSG00000105707 CDS Human protein_coding chr19:35556868 chr19:35556871 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_78740 0 0 1 0 2 HPN chr19:35556936 5'GT 35556936 Upstream 66bp
chr19 4488702 4488702 1 + C T UCEC 4488700 + 4488680 4488720 41 GCTCCTCCGACAGCGAGGCCCCCGAGGCCAACCCCGCCGAC GCTCCTCCGACAGCGAGGCCCCTGAGGCCAACCCCGCCGAC < 41bp 0.814339998294772 0.589856503781708 0.70694077 0.46693033 prediction 0.448966989026128 Functional Loss - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4488700 chr19:4488702 synonymous SNV . 0 23 hm5C_associated_SNPs_78741 0 0 1 0 1 HDGFL2 chr19:4488673 3'AG 4488673 Downstream 30bp
chr10 6262819 6262819 1 + G T UCEC 6262817 + 6262797 6262837 41 GCGACTCAGGCCTGTCCAGCCGGGGCAAGAAGGTGCGGGGT GCGACTCAGGCCTGTCCAGCCGTGGCAAGAAGGTGCGGGGT < 41bp 0.909405323197598 0.684925622564693 0.9368105 0.38782528 prediction 0.448959401265811 Functional Loss - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6262817 chr10:6262819 synonymous SNV . 0 23 hm5C_associated_SNPs_78746 0 0 1 0 1 PFKFB3 chr10:6262828 5'GT 6262828 Upstream 10bp
chr11 113856885 113856885 1 + A C UCEC 113856881 + 113856861 113856901 41 GGAAAGCAGTAACTACTATGCAGAAATGAAGTTCTATGTGA GGAAAGCAGTAACTACTATGCAGACATGAAGTTCTATGTGA < 41bp 0.724477835552055 0.314799000762423 0.10955307 0.11059594 prediction 0.448955671104109 Functional Loss - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113856881 chr11:113856885 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_78747 0 0 0 0 1 HTR3A chr11:113856897 5'GT 113856897 Upstream 13bp
chr2 233735112 233735112 1 + G T SARC 233735110 + 233735090 233735130 41 GGTCTCCGGGGTTCTGGCCCCTGCGGTGCTCACAGGTAAGA GGTCTCCGGGGTTCTGGCCCCTTCGGTGCTCACAGGTAAGA < 41bp 0.724477393099985 0.400106326071874 0.27594876 0.109487444 prediction 0.448954786199971 Functional Loss - C2orf82 ENSG00000182600 CDS Human protein_coding chr2:233735110 chr2:233735112 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_78748 0 0 1 0 1 C2orf82 chr2:233735124 5'GT 233735124 Upstream 13bp
chr19 11352346 11352346 1 + G T SARC 11352344 + 11352324 11352364 41 CTCCCTCCCCAGACTCCACACAGCGGCGCTCCCAGCCTGAA CTCCCTCCCCAGACTCCACACATCGGCGCTCCCAGCCTGAA < 41bp 0.72447536523753 0.37462591155811 0.44897902 0.16923898 prediction 0.448950730475061 Functional Loss - ANGPTL8 ENSG00000130173 CDS Human protein_coding chr19:11352344 chr19:11352346 nonsynonymous SNV 0.893 1 23 hm5C_associated_SNPs_78750 0 0 1 0 1 ANGPTL8 chr19:11352336 3'AG 11352336 Downstream 11bp
chr11 32610202 32610202 1 + G T UCEC 32610199 + 32610179 32610219 41 TGATCCTGGAACCAGACAAGCAAGAAGCTTTGATTGAAAGC TGATCCTGGAACCAGACAAGCAATAAGCTTTGATTGAAAGC < 41bp 0.724469970714232 0.336209912512974 0.24958643 0.25443286 prediction 0.448939941428465 Functional Loss - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32610199 chr11:32610202 stopgain 0.997 1 24 hm5C_associated_SNPs_78755 0 0 1 0 2 EIF3M chr11:32610140 3'AG 32610140 Downstream 63bp
chr11 32610202 32610202 1 + G T UCEC 32610199 + 32610179 32610219 41 TGATCCTGGAACCAGACAAGCAAGAAGCTTTGATTGAAAGC TGATCCTGGAACCAGACAAGCAATAAGCTTTGATTGAAAGC < 41bp 0.724469970714232 0.336209912512974 0.24958643 0.25443286 prediction 0.448939941428465 Functional Loss - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32610199 chr11:32610202 stopgain 0.997 1 24 hm5C_associated_SNPs_78755 0 0 1 0 2 EIF3M chr11:32610278 5'GT 32610278 Upstream 77bp
chr6 25653639 25653639 1 + G A COAD 25653636 + 25653616 25653656 41 GTTACATAGAAGAGAAGGAACTCGATGCTTTCTTTCTCCAC GTTACATAGAAGAGAAGGAACTCAATGCTTTCTTTCTCCAC < 41bp 0.733563385373713 0.509094251319292 0.84538835 0.25177476 prediction 0.448938268108842 Functional Loss - SCGN ENSG00000079689 CDS Human protein_coding chr6:25653636 chr6:25653639 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_78756 0 0 0 0 2 SCGN chr6:25653610 3'AG 25653610 Downstream 30bp
chr6 25653639 25653639 1 + G A COAD 25653636 + 25653616 25653656 41 GTTACATAGAAGAGAAGGAACTCGATGCTTTCTTTCTCCAC GTTACATAGAAGAGAAGGAACTCAATGCTTTCTTTCTCCAC < 41bp 0.733563385373713 0.509094251319292 0.84538835 0.25177476 prediction 0.448938268108842 Functional Loss - SCGN ENSG00000079689 CDS Human protein_coding chr6:25653636 chr6:25653639 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_78756 0 0 0 0 2 SCGN chr6:25653680 5'GT 25653680 Upstream 42bp
chr6 42130745 42130745 1 + G A COAD 42130742 + 42130722 42130762 41 CTCCACACTCGTCCCGGCCCCGGGCGTGGAAGCAGGACCTC CTCCACACTCGTCCCGGCCCCGGACGTGGAAGCAGGACCTC < 41bp 0.780182299576193 0.55571737787993 0.68412405 0.3341815 prediction 0.448929843392528 Functional Loss - GUCA1A ENSG00000214732 CDS Human protein_coding chr6:42130742 chr6:42130745 unknown 0.015 0 24 hm5C_associated_SNPs_78757 0 0 0 0 2 GUCA1A chr6:42130658 3'AG 42130658 Downstream 88bp
chr6 42130745 42130745 1 + G A COAD 42130742 + 42130722 42130762 41 CTCCACACTCGTCCCGGCCCCGGGCGTGGAAGCAGGACCTC CTCCACACTCGTCCCGGCCCCGGACGTGGAAGCAGGACCTC < 41bp 0.780182299576193 0.55571737787993 0.68412405 0.3341815 prediction 0.448929843392528 Functional Loss - GUCA1A ENSG00000214732 CDS Human protein_coding chr6:42130742 chr6:42130745 unknown 0.015 0 24 hm5C_associated_SNPs_78757 0 0 0 0 2 GUCA1A chr6:42130833 5'GT 42130833 Upstream 89bp
chr3 45776851 45776851 1 + C T SKCM 45776848 + 45776828 45776868 41 GTTTGTTAGCTCGTCGTTCACTTCAGGCCCAACTTCAGGTG GTTTGTTAGCTCGTCGTTCACTTTAGGCCCAACTTCAGGTG < 41bp 0.724459842270659 0.498892049772215 0.068630576 0.063693136 prediction 0.448919684541317 Functional Loss - SACM1L ENSG00000211456 CDS Human protein_coding chr3:45776848 chr3:45776851 stopgain 0.947 1 24 hm5C_associated_SNPs_78758 0 0 1 0 1 SACM1L chr3:45776865 5'GT 45776865 Upstream 15bp
chr15 83784653 83784653 1 + G A SKCM 83784650 + 83784630 83784670 41 ACCTCATCATAGGACTGGAGCAAGATGGAATCATTGACGGG ACCTCATCATAGGACTGGAGCAAAATGGAATCATTGACGGG < 41bp 0.780180012087767 0.555720247237878 0.36650038 0.24154595 prediction 0.448919529699778 Functional Loss - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83784650 chr15:83784653 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_78759 0 0 0 0 1 TM6SF1 chr15:83784694 5'GT 83784694 Upstream 42bp
chr9 136305625 136305625 1 + C T SKCM 136305623 + 136305603 136305643 41 AGATCCGCATCTGGGGACCCCTCCAGGAAGATGCTGACATC AGATCCGCATCTGGGGACCCCTTCAGGAAGATGCTGACATC < 41bp 0.724457938270605 0.454400417371194 0.9488044 0.39373204 prediction 0.44891587654121 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136305623 chr9:136305625 synonymous SNV . 0 23 hm5C_associated_SNPs_78764 0 0 0 0 1 ADAMTS13 chr9:136305646 5'GT 136305646 Upstream 22bp
chr12 100897183 100897183 1 + G T LUSC 100897181 + 100897161 100897201 41 TAAGAATGGTAATGCAGTTTCAGGGGTTAGAAAATCCAATT TAAGAATGGTAATGCAGTTTCATGGGTTAGAAAATCCAATT < 41bp 0.724456793624009 0.393005235558246 0.9121896 0.1684868 prediction 0.448913587248017 Functional Loss - NR1H4 ENSG00000012504 CDS Human protein_coding chr12:100897181 chr12:100897183 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_78767 0 0 0 0 1 NR1H4 chr12:100897274 5'GT 100897274 Upstream 92bp
chr17 59557476 59557476 1 + A T BLCA 59557472 + 59557452 59557492 41 AAAGAATACCCCGTGATTTCCAAAAGCATCATGAGGCAGAG AAAGAATACCCCGTGATTTCCAAATGCATCATGAGGCAGAG < 41bp 0.724456702992385 0.405395751544681 0.20215914 0.264416 prediction 0.44891340598477 Functional Loss - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59557472 chr17:59557476 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_78768 0 0 0 0 1 TBX4 chr17:59557451 3'AG 59557451 Downstream 26bp
chr16 58286717 58286717 1 + G A BLCA 58286714 + 58286694 58286734 41 GCCCAGGGATCAGCGACCTCCACGATTATCAGAAATTAAAA GCCCAGGGATCAGCGACCTCCACAATTATCAGAAATTAAAA < 41bp 0.757782508669133 0.533328771485615 0.0370135 0.16325283 prediction 0.448907474367036 Functional Loss - CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58286714 chr16:58286717 nonsynonymous SNV 0.010 0 24 hm5C_associated_SNPs_78770 0 0 0 0 2 CCDC113 chr16:58286631 3'AG 58286631 Downstream 87bp
chr16 58286717 58286717 1 + G A BLCA 58286714 + 58286694 58286734 41 GCCCAGGGATCAGCGACCTCCACGATTATCAGAAATTAAAA GCCCAGGGATCAGCGACCTCCACAATTATCAGAAATTAAAA < 41bp 0.757782508669133 0.533328771485615 0.0370135 0.16325283 prediction 0.448907474367036 Functional Loss - CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58286714 chr16:58286717 nonsynonymous SNV 0.010 0 24 hm5C_associated_SNPs_78770 0 0 0 0 2 CCDC113 chr16:58286757 5'GT 58286757 Upstream 41bp
chr16 2258299 2258299 1 + G A GBM 2258296 + 2258276 2258316 41 GACTAAGATCCCTGCCCACACGCGCTACGCCCTGCAGTGTC GACTAAGATCCCTGCCCACACGCACTACGCCCTGCAGTGTC < 41bp 0.762521550898536 0.53806798724896 0.1586349 0.09437868 prediction 0.448907127299151 Functional Loss - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2258296 chr16:2258299 nonsynonymous SNV 0.877 2 24 hm5C_associated_SNPs_78771 0 0 1 0 2 MLST8 chr16:2258211 3'AG 2258211 Downstream 89bp
chr16 2258299 2258299 1 + G A GBM 2258296 + 2258276 2258316 41 GACTAAGATCCCTGCCCACACGCGCTACGCCCTGCAGTGTC GACTAAGATCCCTGCCCACACGCACTACGCCCTGCAGTGTC < 41bp 0.762521550898536 0.53806798724896 0.1586349 0.09437868 prediction 0.448907127299151 Functional Loss - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2258296 chr16:2258299 nonsynonymous SNV 0.877 2 24 hm5C_associated_SNPs_78771 0 0 1 0 2 MLST8 chr16:2258335 5'GT 2258335 Upstream 37bp
chr19 45971914 45971914 1 + C T COAD 45971912 + 45971892 45971932 41 CTCCTCACCCTCTGCCGAGTCTCAATATCTGTCTTCGGTGG CTCCTCACCCTCTGCCGAGTCTTAATATCTGTCTTCGGTGG < 41bp 0.724451191323218 0.46239353701259 0.38173723 0.1004366 prediction 0.448902382646436 Functional Loss - FOSB ENSG00000125740 CDS Human protein_coding chr19:45971912 chr19:45971914 stopgain 1.000 1 23 hm5C_associated_SNPs_78774 0 0 0 0 1 FOSB chr19:45971970 5'GT 45971970 Upstream 57bp
chr19 58904797 58904797 1 + C T GBM 58904795 + 58904775 58904815 41 AGGACTCCACACGCATTGGGCGCGCCGGGACTGTGAGACGA AGGACTCCACACGCATTGGGCGTGCCGGGACTGTGAGACGA < 41bp 0.724447345569449 0.455137314843179 0.100091904 0.09504327 prediction 0.448894691138897 Functional Loss - RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904795 chr19:58904797 synonymous SNV . 0 23 hm5C_associated_SNPs_78776 0 0 1 0 2 RPS5 chr19:58904726 3'AG 58904726 Downstream 72bp
chr19 58904797 58904797 1 + C T GBM 58904795 + 58904775 58904815 41 AGGACTCCACACGCATTGGGCGCGCCGGGACTGTGAGACGA AGGACTCCACACGCATTGGGCGTGCCGGGACTGTGAGACGA < 41bp 0.724447345569449 0.455137314843179 0.100091904 0.09504327 prediction 0.448894691138897 Functional Loss - RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904795 chr19:58904797 synonymous SNV . 0 23 hm5C_associated_SNPs_78776 0 0 1 0 2 RPS5 chr19:58904854 5'GT 58904854 Upstream 58bp
chr1 153614905 153614905 1 + G A SKCM 153614902 + 153614882 153614922 41 TTAGGGGCGGGATGTCACTCCGAGGTCAGTGCTGTGTACCC TTAGGGGCGGGATGTCACTCCGAAGTCAGTGCTGTGTACCC < 41bp 0.781495622350041 0.557048528100231 0.9206393 0.71450686 prediction 0.44889418849962 Functional Loss - CHTOP ENSG00000160679 CDS Human protein_coding chr1:153614902 chr1:153614905 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_78777 0 0 1 0 1 CHTOP chr1:153614905 5'GT 153614905 Upstream 1bp
chr20 39728858 39728858 1 + G A UCEC 39728855 + 39728835 39728875 41 TGCTGAAGAGACGAATCATGCCCGAGGATATAATCATCAAC TGCTGAAGAGACGAATCATGCCCAAGGATATAATCATCAAC < 41bp 0.724446852103238 0.484511906479167 0.14551428 0.03295806 prediction 0.448893704206475 Functional Loss - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39728855 chr20:39728858 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_78778 0 0 1 0 1 TOP1 chr20:39728883 5'GT 39728883 Upstream 26bp
chr20 33080348 33080348 1 + C T GBM 33080345 + 33080325 33080365 41 ATGAGAAGAGAATGAGACTTCTGCAGTTTGTTACTGGAACC ATGAGAAGAGAATGAGACTTCTGTAGTTTGTTACTGGAACC < 41bp 0.724445869364938 0.496985985399528 0.36404505 0.3249731 prediction 0.448891738729876 Functional Loss - ITCH ENSG00000078747 CDS Human protein_coding chr20:33080345 chr20:33080348 stopgain 0.998 1 24 hm5C_associated_SNPs_78780 0 0 1 0 2 ITCH chr20:33080306 3'AG 33080306 Downstream 43bp
chr20 33080348 33080348 1 + C T GBM 33080345 + 33080325 33080365 41 ATGAGAAGAGAATGAGACTTCTGCAGTTTGTTACTGGAACC ATGAGAAGAGAATGAGACTTCTGTAGTTTGTTACTGGAACC < 41bp 0.724445869364938 0.496985985399528 0.36404505 0.3249731 prediction 0.448891738729876 Functional Loss - ITCH ENSG00000078747 CDS Human protein_coding chr20:33080345 chr20:33080348 stopgain 0.998 1 24 hm5C_associated_SNPs_78780 0 0 1 0 2 ITCH chr20:33080402 5'GT 33080402 Upstream 55bp
chr10 7839117 7839117 1 + C T UCEC 7839115 + 7839095 7839135 41 TGAGAGAGAGCTGAAACCAGCTCGAATATATGGATTGGGAT TGAGAGAGAGCTGAAACCAGCTTGAATATATGGATTGGGAT < 41bp 0.858291363792631 0.633845974610928 0.20061848 0.06163749 prediction 0.448890778363406 Functional Loss - ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7839115 chr10:7839117 stopgain 0.547 1 23 hm5C_associated_SNPs_78781 0 0 1 0 1 ATP5C1 chr10:7839141 5'GT 7839141 Upstream 25bp
chr2 96260134 96260134 1 + C T CESC 96260132 + 96260112 96260152 41 TGTGCTCCAACTCTCAGGAGCACGGGGCTCACAAACACCAT TGTGCTCCAACTCTCAGGAGCATGGGGCTCACAAACACCAT < 41bp 0.724443014280469 0.474360104398645 0.042961985 0.04422772 prediction 0.448886028560937 Functional Loss - TRIM43 ENSG00000144015 CDS Human protein_coding chr2:96260132 chr2:96260134 synonymous SNV . 0 23 hm5C_associated_SNPs_78783 0 0 0 0 1 TRIM43 chr2:96260182 5'GT 96260182 Upstream 49bp
chr3 139075824 139075824 1 + G T COAD 139075821 + 139075801 139075841 41 AACTAACACTGCAGACTTATCAAGAAGCACTCAGTCGCCAT AACTAACACTGCAGACTTATCAATAAGCACTCAGTCGCCAT < 41bp 0.920727914316595 0.696285671627522 0.8674278 0.09722915 prediction 0.448884485378146 Functional Loss - MRPS22 ENSG00000175110 CDS Human protein_coding chr3:139075821 chr3:139075824 stopgain 0.973 1 24 hm5C_associated_SNPs_78784 0 0 1 0 1 MRPS22 chr3:139075761 3'AG 139075761 Downstream 64bp
chrX 74516241 74516241 1 + C T LUSC 74516238 + 74516218 74516258 41 TAAAGAATGCATGGTGACCACTCCAACAGGTAACTAGGGCT TAAAGAATGCATGGTGACCACTCTAACAGGTAACTAGGGCT < 41bp 0.742230038592614 0.517796441829072 0.9612963 0.9440353 prediction 0.448867193527084 Functional Loss - UPRT ENSG00000094841 CDS Human protein_coding chrX:74516238 chrX:74516241 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_78787 0 0 0 3 2 UPRT chrX:74516177 3'AG 74516177 Downstream 65bp
chrX 74516241 74516241 1 + C T LUSC 74516238 + 74516218 74516258 41 TAAAGAATGCATGGTGACCACTCCAACAGGTAACTAGGGCT TAAAGAATGCATGGTGACCACTCTAACAGGTAACTAGGGCT < 41bp 0.742230038592614 0.517796441829072 0.9612963 0.9440353 prediction 0.448867193527084 Functional Loss - UPRT ENSG00000094841 CDS Human protein_coding chrX:74516238 chrX:74516241 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_78787 0 0 0 3 2 UPRT chrX:74516246 5'GT 74516246 Upstream 6bp
chr10 82331231 82331231 1 + T C rs12257493 82331230 + 82331210 82331250 41 CCAAGAAGTTCCGGGATGCTCTGGCCAATGAGAAAGCCCGG CCAAGAAGTTCCGGGATGCTCCGGCCAATGAGAAAGCCCGG < 41bp 0.724432310164264 0.487117149194653 0.52703667 0.8978719 prediction 0.448864620328527 Functional Loss - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82331230 chr10:82331231 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_78788 0 0 0 0 1 SH2D4B chr10:82331187 3'AG 82331187 Downstream 45bp
chr16 46952655 46952655 1 + G T UCEC 46952652 + 46952632 46952672 41 GCCTCCTTCCACTCCACCTCCAAGGGCTACATGGGCGAGTA GCCTCCTTCCACTCCACCTCCAATGGCTACATGGGCGAGTA < 41bp 0.724430016483883 0.319123312016021 0.86930585 0.6649226 prediction 0.448860032967767 Functional Loss - GPT2 ENSG00000166123 CDS Human protein_coding chr16:46952652 chr16:46952655 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_78790 0 0 1 0 1 GPT2 chr16:46952669 5'GT 46952669 Upstream 15bp
chr17 40647696 40647696 1 + G T GBM 40647694 + 40647674 40647714 41 ACAGCTGAACCCAGCCCTCCCTGGAGTGTTTGGTGGACCAT ACAGCTGAACCCAGCCCTCCCTTGAGTGTTTGGTGGACCAT < 41bp 0.88693510507751 0.662505759909745 0.3205803 0.0123232305 prediction 0.44885869033553 Functional Loss - ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40647694 chr17:40647696 stopgain 0.966 1 23 hm5C_associated_SNPs_78791 0 0 1 0 2 ATP6V0A1 chr17:40647644 3'AG 40647644 Downstream 53bp
chr17 40647696 40647696 1 + G T GBM 40647694 + 40647674 40647714 41 ACAGCTGAACCCAGCCCTCCCTGGAGTGTTTGGTGGACCAT ACAGCTGAACCCAGCCCTCCCTTGAGTGTTTGGTGGACCAT < 41bp 0.88693510507751 0.662505759909745 0.3205803 0.0123232305 prediction 0.44885869033553 Functional Loss - ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40647694 chr17:40647696 stopgain 0.966 1 23 hm5C_associated_SNPs_78791 0 0 1 0 2 ATP6V0A1 chr17:40647734 5'GT 40647734 Upstream 39bp
chr1 8403906 8403906 1 + G A rs145801852 8403903 + 8403883 8403923 41 TGGCTCAGATTCTGGTCTCCCTGGTCCTGGGGCCCCTGACC TGGCTCAGATTCTGGTCTCCCTGATCCTGGGGCCCCTGACC < 41bp 0.724427437711252 0.476185045384404 0.133046 0.12892854 prediction 0.448854875422503 Functional Loss - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8403903 chr1:8403906 nonsynonymous SNV 0.950 1 24 hm5C_associated_SNPs_78792 0 0 0 0 1 SLC45A1 chr1:8403807 3'AG 8403807 Downstream 100bp
chr1 248039236 248039236 1 + G A SKCM 248039233 + 248039213 248039253 41 CTGGATCCCGCCACGGCGCACCCGAGTCTGCTCTTGACCGC CTGGATCCCGCCACGGCGCACCCAAGTCTGCTCTTGACCGC < 41bp 0.785028466607914 0.560605084024387 0.10314846 0.04440549 prediction 0.448846765167054 Functional Loss - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039233 chr1:248039236 synonymous SNV . 0 24 hm5C_associated_SNPs_78796 0 0 0 0 1 TRIM58 chr1:248039202 3'AG 248039202 Downstream 35bp
chrX 155234227 155234227 1 + G A SKCM 155234224 + 155234204 155234244 41 TTCAAGAAGCAGGAAGAGGCCTGGGAGGTAACACTTTGGCT TTCAAGAAGCAGGAAGAGGCCTGAGAGGTAACACTTTGGCT < 41bp 0.724418840661034 0.482984366698277 0.28345087 0.20601344 prediction 0.448837681322067 Functional Loss - IL9R ENSG00000124334 CDS Human protein_coding chrX:155234224 chrX:155234227 stopgain 0.902 1 24 hm5C_associated_SNPs_78799 0 0 0 0 1 IL9R chrX:155234230 5'GT 155234230 Upstream 4bp
chr19 3162874 3162874 1 + G A CESC 3162871 + 3162851 3162891 41 ACACCGGGTGCGTGGACGGCCCCGAGGGCAGCAAGAAGGGC ACACCGGGTGCGTGGACGGCCCCAAGGGCAGCAAGAAGGGC < 41bp 0.724416782427833 0.480126896337757 0.25006735 0.1317518 prediction 0.448833564855667 Functional Loss - GNA15 ENSG00000060558 CDS Human protein_coding chr19:3162871 chr19:3162874 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_78801 0 0 0 0 1 GNA15 chr19:3162791 3'AG 3162791 Downstream 84bp
chr4 206471 206471 1 + C T PAAD 206469 + 206449 206489 41 CTTCCACCCCTCAGGGAGGCCTCAGTGATTCGGCCACAGCC CTTCCACCCCTCAGGGAGGCCTTAGTGATTCGGCCACAGCC < 41bp 0.724412602473346 0.498951291137804 0.33426666 0.18011996 prediction 0.448825204946691 Functional Loss - ZNF876P ENSG00000198155 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr4:206469 chr4:206471 . . 0 23 hm5C_associated_SNPs_78802 0 0 0 0 1 ZNF876P chr4:206570 5'GT 206570 Upstream 100bp
chr17 26686008 26686008 1 + C T SKCM 26686005 + 26685985 26686025 41 TCTCCCAGAGGTTGTGAAGCCTCCACGGGTATGTAAGGGAT TCTCCCAGAGGTTGTGAAGCCTCTACGGGTATGTAAGGGAT < 41bp 0.775425272377132 0.551012731215628 0.9357729 0.59826887 prediction 0.448825082323008 Functional Loss - TMEM199 ENSG00000244045 CDS Human protein_coding chr17:26686005 chr17:26686008 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_78803 0 0 1 0 2 TMEM199 chr17:26685939 3'AG 26685939 Downstream 70bp
chr17 26686008 26686008 1 + C T SKCM 26686005 + 26685985 26686025 41 TCTCCCAGAGGTTGTGAAGCCTCCACGGGTATGTAAGGGAT TCTCCCAGAGGTTGTGAAGCCTCTACGGGTATGTAAGGGAT < 41bp 0.775425272377132 0.551012731215628 0.9357729 0.59826887 prediction 0.448825082323008 Functional Loss - TMEM199 ENSG00000244045 CDS Human protein_coding chr17:26686005 chr17:26686008 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_78803 0 0 1 0 2 TMEM199 chr17:26686012 5'GT 26686012 Upstream 5bp
chr9 37692734 37692734 1 + G A LUAD 37692731 + 37692711 37692751 41 CTTCGGCGCTCCCGGGACAGCTCGGCCCGGTAAGCCTCCTG CTTCGGCGCTCCCGGGACAGCTCAGCCCGGTAAGCCTCCTG < 41bp 0.773517051388796 0.549105767150612 0.27350968 0.15689552 prediction 0.448822568476368 Functional Loss - FRMPD1 ENSG00000070601 CDS Human protein_coding chr9:37692731 chr9:37692734 synonymous SNV . 0 24 hm5C_associated_SNPs_78804 0 0 0 0 2 FRMPD1 chr9:37692635 3'AG 37692635 Downstream 100bp
chr9 37692734 37692734 1 + G A LUAD 37692731 + 37692711 37692751 41 CTTCGGCGCTCCCGGGACAGCTCGGCCCGGTAAGCCTCCTG CTTCGGCGCTCCCGGGACAGCTCAGCCCGGTAAGCCTCCTG < 41bp 0.773517051388796 0.549105767150612 0.27350968 0.15689552 prediction 0.448822568476368 Functional Loss - FRMPD1 ENSG00000070601 CDS Human protein_coding chr9:37692731 chr9:37692734 synonymous SNV . 0 24 hm5C_associated_SNPs_78804 0 0 0 0 2 FRMPD1 chr9:37692739 5'GT 37692739 Upstream 6bp
chr11 118245629 118245629 1 + G A UCEC 118245626 + 118245606 118245646 41 AACAGTTCATGGCTCAGTTCCACGAAAAGATCTACCAGATG AACAGTTCATGGCTCAGTTCCACAAAAAGATCTACCAGATG < 41bp 0.724564854745006 0.500157328836645 0.049940497 0.030915141 prediction 0.448815051816721 Functional Loss - UBE4A ENSG00000110344 CDS Human protein_coding chr11:118245626 chr11:118245629 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_78806 0 0 1 0 1 UBE4A chr11:118245611 3'AG 118245611 Downstream 19bp
chr17 6013029 6013029 1 + G A UCEC 6013026 + 6013006 6013046 41 TGGACAGCTCAGTATGTGGCCAGGACCCTGAGGCACAGAGG TGGACAGCTCAGTATGTGGCCAGAACCCTGAGGCACAGAGG < 41bp 0.724402124529697 0.469206853868497 0.7954421 0.6332108 prediction 0.448804249059393 Functional Loss - WSCD1 ENSG00000179314 CDS Human protein_coding chr17:6013026 chr17:6013029 nonsynonymous SNV 0.563 0 24 hm5C_associated_SNPs_78809 0 0 0 0 1 WSCD1 chr17:6013086 5'GT 6013086 Upstream 58bp
chr3 159707982 159707982 1 + C T SKCM 159707980 + 159707960 159708000 41 TCCTTGTGGCTACCCTGGTCCTCCTGGACCACCTCAGTTTG TCCTTGTGGCTACCCTGGTCCTTCTGGACCACCTCAGTTTG < 41bp 0.724400728629635 0.444335276332756 0.0131292045 0.013375938 prediction 0.44880145725927 Functional Loss - IL12A ENSG00000168811 CDS Human protein_coding chr3:159707980 chr3:159707982 synonymous SNV . 0 23 hm5C_associated_SNPs_78812 0 0 0 0 1 IL12A chr3:159707954 3'AG 159707954 Downstream 29bp
chr10 18242422 18242422 1 + G T LUSC 18242420 + 18242400 18242440 41 CAAAACATTGTTGGAGAAAACTGGGTGCCCACGGAGGAGAA CAAAACATTGTTGGAGAAAACTTGGTGCCCACGGAGGAGAA < 41bp 0.905064567035976 0.680666614707 0.8978268 0.25680336 prediction 0.448795904657953 Functional Loss - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18242420 chr10:18242422 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_78815 0 0 0 0 1 SLC39A12 chr10:18242466 5'GT 18242466 Upstream 45bp
chr2 29225570 29225570 1 + G T CESC 29225567 + 29225547 29225587 41 AGAGAAGGGCCTGGACCTACCGGGGAGCATTCCGGGTCCTC AGAGAAGGGCCTGGACCTACCGGTGAGCATTCCGGGTCCTC < 41bp 0.935805510456634 0.711409352768132 0.9269988 0.4578232 prediction 0.448792315377005 Functional Loss - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29225567 chr2:29225570 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_78816 0 0 0 0 1 TOGARAM2 chr2:29225613 5'GT 29225613 Upstream 44bp
chr6 159006392 159006392 1 + G A UCEC 159006389 + 159006369 159006409 41 TTAAAGTCGATGGTGTAGCTCAAGATGGAACCACGATGTAC TTAAAGTCGATGGTGTAGCTCAAAATGGAACCACGATGTAC < 41bp 0.724385169788161 0.48789585150014 0.2518736 0.052137226 prediction 0.448770339576322 Functional Loss - TMEM181 ENSG00000146433 CDS Human protein_coding chr6:159006389 chr6:159006392 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_78823 0 0 1 0 2 TMEM181 chr6:159006336 3'AG 159006336 Downstream 57bp
chr6 159006392 159006392 1 + G A UCEC 159006389 + 159006369 159006409 41 TTAAAGTCGATGGTGTAGCTCAAGATGGAACCACGATGTAC TTAAAGTCGATGGTGTAGCTCAAAATGGAACCACGATGTAC < 41bp 0.724385169788161 0.48789585150014 0.2518736 0.052137226 prediction 0.448770339576322 Functional Loss - TMEM181 ENSG00000146433 CDS Human protein_coding chr6:159006389 chr6:159006392 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_78823 0 0 1 0 2 TMEM181 chr6:159006457 5'GT 159006457 Upstream 66bp
chr15 80873678 80873678 1 + C T SKCM 80873675 + 80873655 80873695 41 CCCTCTTCCTACAGCCCCCTCTCCAGCCCAGCTACCTCCTC CCCTCTTCCTACAGCCCCCTCTCTAGCCCAGCTACCTCCTC < 41bp 0.752052317011215 0.527667677991599 0.96361554 0.8956942 prediction 0.448769278039233 Functional Loss - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80873675 chr15:80873678 synonymous SNV . 0 24 hm5C_associated_SNPs_78824 0 0 0 0 2 ARNT2 chr15:80873580 3'AG 80873580 Downstream 99bp
chr15 80873678 80873678 1 + C T SKCM 80873675 + 80873655 80873695 41 CCCTCTTCCTACAGCCCCCTCTCCAGCCCAGCTACCTCCTC CCCTCTTCCTACAGCCCCCTCTCTAGCCCAGCTACCTCCTC < 41bp 0.752052317011215 0.527667677991599 0.96361554 0.8956942 prediction 0.448769278039233 Functional Loss - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80873675 chr15:80873678 synonymous SNV . 0 24 hm5C_associated_SNPs_78824 0 0 0 0 2 ARNT2 chr15:80873745 5'GT 80873745 Upstream 68bp
chr2 29356568 29356568 1 + G A SKCM 29356565 + 29356545 29356585 41 TTGCAACTCAGCTTATTGACCTGGGAGCAGACATTAGTTTG TTGCAACTCAGCTTATTGACCTGAGAGCAGACATTAGTTTG < 41bp 0.727252511264426 0.502869563511275 0.43618312 0.21784684 prediction 0.448765895506302 Functional Loss - CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29356565 chr2:29356568 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_78825 0 0 0 0 1 CLIP4 chr2:29356521 3'AG 29356521 Downstream 48bp
chr10 82185667 82185667 1 + G T LUSC 82185664 + 82185644 82185684 41 TGAAAAGCATGTTGGACCAGCTGGGCGTCCCCCTCTATGCA TGAAAAGCATGTTGGACCAGCTGTGCGTCCCCCTCTATGCA < 41bp 0.724382221309859 0.31291764393555 0.38194925 0.06425217 prediction 0.448764442619718 Functional Loss - FAM213A ENSG00000122378 CDS Human protein_coding chr10:82185664 chr10:82185667 nonsynonymous SNV 0.526 4 24 hm5C_associated_SNPs_78826 0 0 1 0 2 FAM213A chr10:82185622 3'AG 82185622 Downstream 46bp
chr10 82185667 82185667 1 + G T LUSC 82185664 + 82185644 82185684 41 TGAAAAGCATGTTGGACCAGCTGGGCGTCCCCCTCTATGCA TGAAAAGCATGTTGGACCAGCTGTGCGTCCCCCTCTATGCA < 41bp 0.724382221309859 0.31291764393555 0.38194925 0.06425217 prediction 0.448764442619718 Functional Loss - FAM213A ENSG00000122378 CDS Human protein_coding chr10:82185664 chr10:82185667 nonsynonymous SNV 0.526 4 24 hm5C_associated_SNPs_78826 0 0 1 0 2 FAM213A chr10:82185762 5'GT 82185762 Upstream 96bp
chrX 153678268 153678268 1 + G A LUSC 153678265 + 153678245 153678285 41 CGACTTCATCGTCACCAAGGCACGGGGGAAGAGTGGTGAGT CGACTTCATCGTCACCAAGGCACAGGGGAAGAGTGGTGAGT < 41bp 0.785997860743443 0.561617276658262 0.2681507 0.121495694 prediction 0.448761168170361 Functional Loss - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153678265 chrX:153678268 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_78827 0 0 1 0 2 FAM50A chrX:153678231 3'AG 153678231 Downstream 38bp
chrX 153678268 153678268 1 + G A LUSC 153678265 + 153678245 153678285 41 CGACTTCATCGTCACCAAGGCACGGGGGAAGAGTGGTGAGT CGACTTCATCGTCACCAAGGCACAGGGGAAGAGTGGTGAGT < 41bp 0.785997860743443 0.561617276658262 0.2681507 0.121495694 prediction 0.448761168170361 Functional Loss - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153678265 chrX:153678268 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_78827 0 0 1 0 2 FAM50A chrX:153678279 5'GT 153678279 Upstream 12bp
chr1 156180113 156180113 1 + C T BLCA 156180111 + 156180091 156180131 41 TGGGGCCTCATGAAGGGCCTCTCGGCCAGAATCATCTCAGC TGGGGCCTCATGAAGGGCCTCTTGGCCAGAATCATCTCAGC < 41bp 0.724377229612771 0.450183507486198 0.42106047 0.13375738 prediction 0.448754459225543 Functional Loss - SLC25A44 ENSG00000160785 CDS Human protein_coding chr1:156180111 chr1:156180113 nonsynonymous SNV 0.940 3 23 hm5C_associated_SNPs_78829 0 0 1 1 1 SLC25A44 chr1:156180031 3'AG 156180031 Downstream 83bp
chr4 8477525 8477525 1 + G A UCEC 8477522 + 8477502 8477542 41 TGAATGGGAGAGTTCACATCCGCGACTGGCGAGAGGAGACA TGAATGGGAGAGTTCACATCCGCAACTGGCGAGAGGAGACA < 41bp 0.724373986845034 0.496198604445672 0.1950784 0.12270501 prediction 0.448747973690068 Functional Loss - TRMT44 ENSG00000155275 CDS Human protein_coding chr4:8477522 chr4:8477525 nonsynonymous SNV 0.867 1 24 hm5C_associated_SNPs_78832 0 0 1 0 1 TRMT44 chr4:8477499 3'AG 8477499 Downstream 27bp
chr2 43919740 43919740 1 + G A SKCM 43919737 + 43919717 43919757 41 TATATAATAAGTGTCAAGATCTGGAGTCGCTAATACAGGAA TATATAATAAGTGTCAAGATCTGAAGTCGCTAATACAGGAA < 41bp 0.724719248681455 0.5003453820468 0.21549964 0.109065205 prediction 0.448747733269309 Functional Loss - PLEKHH2 ENSG00000152527 CDS Human protein_coding chr2:43919737 chr2:43919740 nonsynonymous SNV 0.877 1 24 hm5C_associated_SNPs_78833 0 0 0 0 2 PLEKHH2 chr2:43919653 3'AG 43919653 Downstream 88bp
chr2 43919740 43919740 1 + G A SKCM 43919737 + 43919717 43919757 41 TATATAATAAGTGTCAAGATCTGGAGTCGCTAATACAGGAA TATATAATAAGTGTCAAGATCTGAAGTCGCTAATACAGGAA < 41bp 0.724719248681455 0.5003453820468 0.21549964 0.109065205 prediction 0.448747733269309 Functional Loss - PLEKHH2 ENSG00000152527 CDS Human protein_coding chr2:43919737 chr2:43919740 nonsynonymous SNV 0.877 1 24 hm5C_associated_SNPs_78833 0 0 0 0 2 PLEKHH2 chr2:43919802 5'GT 43919802 Upstream 63bp
chr20 33581170 33581170 1 + G A SKCM 33581167 + 33581147 33581187 41 AGGCTGGGCTTCTAGGCGTCCTGGAAGAGCTCCGTGACCAG AGGCTGGGCTTCTAGGCGTCCTGAAAGAGCTCCGTGACCAG < 41bp 0.7785740818586 0.554202375761228 0.3841384 0.28336114 prediction 0.448743412194743 Functional Loss - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33581167 chr20:33581170 nonsynonymous SNV 0.986 3 24 hm5C_associated_SNPs_78834 0 0 0 0 1 MYH7B chr20:33581137 3'AG 33581137 Downstream 34bp
chr3 44771152 44771152 1 + G A rs560740803 44771149 + 44771129 44771169 41 TCCTTTCCGCAGGGCAGCACCCAGGGACCTGAGTGTTGCAA TCCTTTCCGCAGGGCAGCACCCAAGGACCTGAGTGTTGCAA < 41bp 0.776325793084037 0.551956468713006 0.77700496 0.1382665 prediction 0.448738648742063 Functional Loss - ZNF501 ENSG00000186446 UTR5 Human protein_coding chr3:44771149 chr3:44771152 . . 0 24 hm5C_associated_SNPs_78836 0 0 0 0 1 ZNF501 chr3:44771214 5'GT 44771214 Upstream 63bp
chr7 37907476 37907476 1 + G T OV 37907473 + 37907453 37907493 41 GGTCGAAGCCCAGGTTACACCTGGAATGATGAAGAACAAAC GGTCGAAGCCCAGGTTACACCTGTAATGATGAAGAACAAAC < 41bp 0.909567947097654 0.685200014536457 0.3839739 0.2282415 prediction 0.448735865122393 Functional Loss - NME8 ENSG00000086288 CDS Human protein_coding chr7:37907473 chr7:37907476 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_78839 0 0 0 0 1 NME8 chr7:37907500 5'GT 37907500 Upstream 25bp
chr9 34977143 34977143 1 + C T HNSC 34977141 + 34977121 34977161 41 AGCCCGAGCCGCCTTCCTGGCTCGGGGCAGTGGGAGCACCG AGCCCGAGCCGCCTTCCTGGCTTGGGGCAGTGGGAGCACCG < 41bp 0.833287478203392 0.608919866965162 0.24714792 0.23250225 prediction 0.44873522247646 Functional Loss - PHF24 ENSG00000122733 CDS Human protein_coding chr9:34977141 chr9:34977143 nonsynonymous SNV 0.716 0 23 hm5C_associated_SNPs_78840 0 0 0 0 2 PHF24 chr9:34977080 3'AG 34977080 Downstream 64bp
chr9 34977143 34977143 1 + C T HNSC 34977141 + 34977121 34977161 41 AGCCCGAGCCGCCTTCCTGGCTCGGGGCAGTGGGAGCACCG AGCCCGAGCCGCCTTCCTGGCTTGGGGCAGTGGGAGCACCG < 41bp 0.833287478203392 0.608919866965162 0.24714792 0.23250225 prediction 0.44873522247646 Functional Loss - PHF24 ENSG00000122733 CDS Human protein_coding chr9:34977141 chr9:34977143 nonsynonymous SNV 0.716 0 23 hm5C_associated_SNPs_78840 0 0 0 0 2 PHF24 chr9:34977240 5'GT 34977240 Upstream 98bp
chr5 44815042 44815042 1 + G A UCEC 44815039 + 44815019 44815059 41 CTGGAGTGAAGCAGATGTTACTCGACCTTTTGTCTCCCAGG CTGGAGTGAAGCAGATGTTACTCAACCTTTTGTCTCCCAGG < 41bp 0.767407515245691 0.54304243410263 0.37879288 0.5198276 prediction 0.448730162286122 Functional Loss - MRPS30 ENSG00000112996 CDS Human protein_coding chr5:44815039 chr5:44815042 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_78841 0 0 1 0 1 MRPS30 chr5:44815015 3'AG 44815015 Downstream 28bp
chr11 63671487 63671487 1 + C T STAD 63671485 + 63671465 63671505 41 ATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGC ATGCCAGGGTCCCGGGCCTCCATGGCTTCTGCTTCTGCCGC < 41bp 0.82017285986273 0.595808445874562 0.5773162 0.6379398 prediction 0.448728827976335 Functional Loss - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63671485 chr11:63671487 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_78842 0 0 1 0 1 MARK2 chr11:63671458 3'AG 63671458 Downstream 30bp
chr6 54173700 54173700 1 + G A SKCM 54173697 + 54173677 54173717 41 CTCACACACAGCCTTGGTATCCAGAAGGTAGGCTTTGGGAA CTCACACACAGCCTTGGTATCCAAAAGGTAGGCTTTGGGAA < 41bp 0.724362633648827 0.483423707597472 0.6355209 0.18755645 prediction 0.448725267297654 Functional Loss - TINAG ENSG00000137251 CDS Human protein_coding chr6:54173697 chr6:54173700 nonsynonymous SNV 0.889 0 24 hm5C_associated_SNPs_78843 0 0 0 0 1 TINAG chr6:54173703 5'GT 54173703 Upstream 4bp
chr19 843968 843968 1 + G T SARC 843965 + 843945 843985 41 GAGCCCACCCAGCAGCACTTCTCGGTGGCTCAGGTGTTTCT GAGCCCACCCAGCAGCACTTCTCTGTGGCTCAGGTGTTTCT < 41bp 0.724358865775078 0.326264444364686 0.22815621 0.05279261 prediction 0.448717731550157 Functional Loss - PRTN3 ENSG00000196415 CDS Human protein_coding chr19:843965 chr19:843968 synonymous SNV . 0 24 hm5C_associated_SNPs_78845 0 0 0 0 2 PRTN3 chr19:843893 3'AG 843893 Downstream 76bp
chr19 843968 843968 1 + G T SARC 843965 + 843945 843985 41 GAGCCCACCCAGCAGCACTTCTCGGTGGCTCAGGTGTTTCT GAGCCCACCCAGCAGCACTTCTCTGTGGCTCAGGTGTTTCT < 41bp 0.724358865775078 0.326264444364686 0.22815621 0.05279261 prediction 0.448717731550157 Functional Loss - PRTN3 ENSG00000196415 CDS Human protein_coding chr19:843965 chr19:843968 synonymous SNV . 0 24 hm5C_associated_SNPs_78845 0 0 0 0 2 PRTN3 chr19:844034 5'GT 844034 Upstream 67bp
chr3 112066633 112066633 1 + T C STAD 112066632 + 112066612 112066652 41 AGGAGGTGATCTGCCAGGTGCTGCACCTGGGGACTGTGACC AGGAGGTGATCTGCCAGGTGCCGCACCTGGGGACTGTGACC < 41bp 0.72435806672185 0.469846096372437 0.7720525 0.18454841 prediction 0.448716133443699 Functional Loss - CD200 ENSG00000091972 CDS Human protein_coding chr3:112066632 chr3:112066633 nonsynonymous SNV 0.983 1 22 hm5C_associated_SNPs_78847 0 0 0 0 1 CD200 chr3:112066677 5'GT 112066677 Upstream 45bp
chr7 152550654 152550654 1 + G A BRCA 152550651 + 152550631 152550671 41 TGTGGTTCGGAGGCTCCATGCTGGCCTCGACTGTAAGTCCC TGTGGTTCGGAGGCTCCATGCTGACCTCGACTGTAAGTCCC < 41bp 0.724355817500479 0.478172242062516 0.38812098 0.1154165 prediction 0.448711635000958 Functional Loss - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152550651 chr7:152550654 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_78848 0 0 1 0 2 ACTR3B chr7:152550579 3'AG 152550579 Downstream 76bp
chr7 152550654 152550654 1 + G A BRCA 152550651 + 152550631 152550671 41 TGTGGTTCGGAGGCTCCATGCTGGCCTCGACTGTAAGTCCC TGTGGTTCGGAGGCTCCATGCTGACCTCGACTGTAAGTCCC < 41bp 0.724355817500479 0.478172242062516 0.38812098 0.1154165 prediction 0.448711635000958 Functional Loss - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152550651 chr7:152550654 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_78848 0 0 1 0 2 ACTR3B chr7:152550662 5'GT 152550662 Upstream 9bp
chr2 26678082 26678082 1 + A C rs115095929 26678081 + 26678061 26678101 41 CAGAGCTGCAGGCGCTACTGCAGCAGTATCTGAACTCCAAG CAGAGCTGCAGGCGCTACTGCCGCAGTATCTGAACTCCAAG < 41bp 0.724353345013571 0.460759598545127 0.7029525 0.33449006 prediction 0.448706690027142 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26678081 chr2:26678082 nonsynonymous SNV 0.215 3 22 hm5C_associated_SNPs_78851 1 0 0 0 2 DRC1 chr2:26677999 3'AG 26677999 Downstream 84bp
chr2 26678082 26678082 1 + A C rs115095929 26678081 + 26678061 26678101 41 CAGAGCTGCAGGCGCTACTGCAGCAGTATCTGAACTCCAAG CAGAGCTGCAGGCGCTACTGCCGCAGTATCTGAACTCCAAG < 41bp 0.724353345013571 0.460759598545127 0.7029525 0.33449006 prediction 0.448706690027142 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26678081 chr2:26678082 nonsynonymous SNV 0.215 3 22 hm5C_associated_SNPs_78851 1 0 0 0 2 DRC1 chr2:26678101 5'GT 26678101 Upstream 20bp
chr6 131971248 131971248 1 + G C KIRC 131971244 + 131971224 131971264 41 GTGATGTGGCATGTAAAGACCGAGGTGATTGCTGCTGGGAT GTGATGTGGCATGTAAAGACCGAGCTGATTGCTGCTGGGAT < 41bp 0.724348785945184 0.429846987560095 0.88662624 0.5078205 prediction 0.448697571890369 Functional Loss - ENPP3 ENSG00000154269 CDS Human protein_coding chr6:131971244 chr6:131971248 nonsynonymous SNV 0.558 2 25 hm5C_associated_SNPs_78853 0 0 1 6 2 ENPP3 chr6:131971167 3'AG 131971167 Downstream 82bp
chr6 131971248 131971248 1 + G C KIRC 131971244 + 131971224 131971264 41 GTGATGTGGCATGTAAAGACCGAGGTGATTGCTGCTGGGAT GTGATGTGGCATGTAAAGACCGAGCTGATTGCTGCTGGGAT < 41bp 0.724348785945184 0.429846987560095 0.88662624 0.5078205 prediction 0.448697571890369 Functional Loss - ENPP3 ENSG00000154269 CDS Human protein_coding chr6:131971244 chr6:131971248 nonsynonymous SNV 0.558 2 25 hm5C_associated_SNPs_78853 0 0 1 6 2 ENPP3 chr6:131971289 5'GT 131971289 Upstream 42bp
chr8 36768584 36768584 1 + C T LUSC 36768582 + 36768562 36768602 41 GAAGCCATCATGGCAACCCTCACCATCGGATCCTTGCAAAT GAAGCCATCATGGCAACCCTCATCATCGGATCCTTGCAAAT < 41bp 0.724333177263708 0.421112192966014 0.039864928 0.037267655 prediction 0.448666354527415 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36768582 chr8:36768584 nonsynonymous SNV 0.129 1 23 hm5C_associated_SNPs_78861 0 0 0 0 1 KCNU1 chr8:36768637 5'GT 36768637 Upstream 54bp
chr18 28711632 28711632 1 - C T LUAD 28711635 - 28711615 28711655 41 CATCAGACCTTGGAGTCCGTCAAGGGAGTGGGGCAGGGAGA CATCAGACCTTGGAGTCCGTCAAAGGAGTGGGGCAGGGAGA < 41bp 0.781334690905177 0.55700837788992 0.9007766 0.8616205 prediction 0.448652626030514 Functional Loss - DSC1 ENSG00000134765 CDS Human protein_coding chr18:28711635 chr18:28711632 synonymous SNV . 0 24 hm5C_associated_SNPs_78863 0 0 0 0 1 DSC1 chr18:28711557 5'GT 28711557 Upstream 76bp
chr2 85604584 85604584 1 + G A CESC 85604581 + 85604561 85604601 41 GCAGGAGATTTTCCGCCTGTCTCGTCACCACATCCAGGTGA GCAGGAGATTTTCCGCCTGTCTCATCACCACATCCAGGTGA < 41bp 0.724325446526817 0.483452541936086 0.37131384 0.22339591 prediction 0.448650893053633 Functional Loss - ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85604581 chr2:85604584 nonsynonymous SNV 0.958 0 24 hm5C_associated_SNPs_78865 0 0 1 1 1 ELMOD3 chr2:85604597 5'GT 85604597 Upstream 14bp
chr2 172841177 172841177 1 + G A COAD 172841174 + 172841154 172841194 41 TCAAGATTTGCCCTGTTTTTCCCGGGAAAAATTAATGCAAG TCAAGATTTGCCCTGTTTTTCCCAGGAAAAATTAATGCAAG < 41bp 0.736222629759234 0.511897941512357 0.911006 0.35264108 prediction 0.448649376493753 Functional Loss - HAT1 ENSG00000128708 CDS Human protein_coding chr2:172841174 chr2:172841177 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_78866 0 0 1 0 2 HAT1 chr2:172841096 3'AG 172841096 Downstream 82bp
chr2 172841177 172841177 1 + G A COAD 172841174 + 172841154 172841194 41 TCAAGATTTGCCCTGTTTTTCCCGGGAAAAATTAATGCAAG TCAAGATTTGCCCTGTTTTTCCCAGGAAAAATTAATGCAAG < 41bp 0.736222629759234 0.511897941512357 0.911006 0.35264108 prediction 0.448649376493753 Functional Loss - HAT1 ENSG00000128708 CDS Human protein_coding chr2:172841174 chr2:172841177 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_78866 0 0 1 0 2 HAT1 chr2:172841247 5'GT 172841247 Upstream 71bp
chr1 33149611 33149611 1 - C T KIRC 33149614 - 33149594 33149634 41 GTGGAATGGAGACACAGTCTCAAGGTGATCTTTGTGAAGAG GTGGAATGGAGACACAGTCTCAAAGTGATCTTTGTGAAGAG < 41bp 0.724323823669878 0.485542190000417 0.8921786 0.74588984 prediction 0.448647647339756 Functional Loss - SYNC ENSG00000162520 CDS Human protein_coding chr1:33149614 chr1:33149611 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_78868 0 0 0 0 2 SYNC chr1:33149611 5'GT 33149611 Upstream 1bp
chr1 33149611 33149611 1 - C T KIRC 33149614 - 33149594 33149634 41 GTGGAATGGAGACACAGTCTCAAGGTGATCTTTGTGAAGAG GTGGAATGGAGACACAGTCTCAAAGTGATCTTTGTGAAGAG < 41bp 0.724323823669878 0.485542190000417 0.8921786 0.74588984 prediction 0.448647647339756 Functional Loss - SYNC ENSG00000162520 CDS Human protein_coding chr1:33149614 chr1:33149611 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_78868 0 0 0 0 2 SYNC chr1:33149690 3'AG 33149690 Downstream 80bp
chr11 63995065 63995065 1 + A C SKCM 63995064 + 63995044 63995084 41 TGTGCCCTGGTGGCAGCCCCCAGCACCAGGACCTCGCTGGG TGTGCCCTGGTGGCAGCCCCCCGCACCAGGACCTCGCTGGG < 41bp 0.811141350100152 0.586817735172009 0.47013637 0.27681452 prediction 0.448647229856285 Functional Loss - NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63995064 chr11:63995065 nonsynonymous SNV 0.976 0 22 hm5C_associated_SNPs_78869 0 0 1 0 2 NUDT22 chr11:63995040 3'AG 63995040 Downstream 26bp
chr11 63995065 63995065 1 + A C SKCM 63995064 + 63995044 63995084 41 TGTGCCCTGGTGGCAGCCCCCAGCACCAGGACCTCGCTGGG TGTGCCCTGGTGGCAGCCCCCCGCACCAGGACCTCGCTGGG < 41bp 0.811141350100152 0.586817735172009 0.47013637 0.27681452 prediction 0.448647229856285 Functional Loss - NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63995064 chr11:63995065 nonsynonymous SNV 0.976 0 22 hm5C_associated_SNPs_78869 0 0 1 0 2 NUDT22 chr11:63995138 5'GT 63995138 Upstream 74bp
chr12 57944160 57944160 1 + G A BRCA 57944157 + 57944137 57944177 41 ACAAGTTCATCCCCATTTTCCAAGGGGACGACAGCGTCGTT ACAAGTTCATCCCCATTTTCCAAAGGGACGACAGCGTCGTT < 41bp 0.772776921121962 0.548461565550299 0.93769884 0.91702986 prediction 0.448630711143325 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57944157 chr12:57944160 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_78873 0 0 1 0 1 KIF5A chr12:57944183 5'GT 57944183 Upstream 24bp
chr8 145731984 145731984 1 + C T COAD 145731982 + 145731962 145732002 41 AGCTGCAACCCAGTGCAGGGCGCCATGTACTCCTTCCCGCG AGCTGCAACCCAGTGCAGGGCGTCATGTACTCCTTCCCGCG < 41bp 0.796862483693457 0.572549214155795 0.25573084 0.31950969 prediction 0.448626539075325 Functional Loss - GPT ENSG00000167701 CDS Human protein_coding chr8:145731982 chr8:145731984 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_78874 0 0 0 0 1 GPT chr8:145732039 5'GT 145732039 Upstream 56bp
chr19 14454261 14454261 1 + G A rs150377237 14454258 + 14454238 14454278 41 AGCCAGCCAGGCCCCTGGGCCTGGAGCATCCACAGGAGGAA AGCCAGCCAGGCCCCTGGGCCTGAAGCATCCACAGGAGGAA < 41bp 0.72431214840156 0.495944164997972 0.26942632 0.19268793 prediction 0.448624296803121 Functional Loss - LINC01842 ENSG00000267147 ncRNA_exonic Human lincRNA chr19:14454258 chr19:14454261 . . 0 24 hm5C_associated_SNPs_78875 0 0 0 0 1 LINC01842 chr19:14454238 3'AG 14454238 Downstream 24bp
chr1 156314442 156314442 1 + C T BLCA 156314439 + 156314419 156314459 41 CCTCCCCCAGCTATATTAATCTTCAAGCAAGTTCCCCACCA CCTCCCCCAGCTATATTAATCTTTAAGCAAGTTCCCCACCA < 41bp 0.731847031421326 0.5075421834412 0.8675654 0.2365813 prediction 0.448609695960251 Functional Loss - TSACC ENSG00000163467 CDS Human protein_coding chr1:156314439 chr1:156314442 stopgain 0.970 0 24 hm5C_associated_SNPs_78877 0 0 0 0 2 TSACC chr1:156314371 3'AG 156314371 Downstream 72bp
chr1 156314442 156314442 1 + C T BLCA 156314439 + 156314419 156314459 41 CCTCCCCCAGCTATATTAATCTTCAAGCAAGTTCCCCACCA CCTCCCCCAGCTATATTAATCTTTAAGCAAGTTCCCCACCA < 41bp 0.731847031421326 0.5075421834412 0.8675654 0.2365813 prediction 0.448609695960251 Functional Loss - TSACC ENSG00000163467 CDS Human protein_coding chr1:156314439 chr1:156314442 stopgain 0.970 0 24 hm5C_associated_SNPs_78877 0 0 0 0 2 TSACC chr1:156314499 5'GT 156314499 Upstream 58bp
chr8 136561054 136561054 1 + C T LUSC 136561051 + 136561031 136561071 41 ACTTCCATCTCAATGATGATCTCCATGTTCTCATTGAAGTG ACTTCCATCTCAATGATGATCTCTATGTTCTCATTGAAGTG < 41bp 0.724298827106795 0.491445093069631 0.94371355 0.8879949 prediction 0.448597654213591 Functional Loss - KHDRBS3 ENSG00000131773 CDS Human protein_coding chr8:136561051 chr8:136561054 nonsynonymous SNV 0.967 4 24 hm5C_associated_SNPs_78879 0 0 1 0 2 KHDRBS3 chr8:136560997 3'AG 136560997 Downstream 58bp
chr8 136561054 136561054 1 + C T LUSC 136561051 + 136561031 136561071 41 ACTTCCATCTCAATGATGATCTCCATGTTCTCATTGAAGTG ACTTCCATCTCAATGATGATCTCTATGTTCTCATTGAAGTG < 41bp 0.724298827106795 0.491445093069631 0.94371355 0.8879949 prediction 0.448597654213591 Functional Loss - KHDRBS3 ENSG00000131773 CDS Human protein_coding chr8:136561051 chr8:136561054 nonsynonymous SNV 0.967 4 24 hm5C_associated_SNPs_78879 0 0 1 0 2 KHDRBS3 chr8:136561143 5'GT 136561143 Upstream 90bp
chr17 2265068 2265068 1 + G A UCEC 2265065 + 2265045 2265085 41 GGGAGATTTGCCACAAGGTACAGGAGCTGCAGCAACAAGCA GGGAGATTTGCCACAAGGTACAGAAGCTGCAGCAACAAGCA < 41bp 0.724298351177009 0.47575710000619 0.6276052 0.4519303 prediction 0.448596702354018 Functional Loss - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2265065 chr17:2265068 nonsynonymous SNV 0.988 2 24 hm5C_associated_SNPs_78880 0 0 1 0 1 SGSM2 chr17:2265093 5'GT 2265093 Upstream 26bp
chr19 8486818 8486818 1 + G A rs200200875 8486815 + 8486795 8486835 41 AGGTCGTGGAGGCTACGGGCCTCGGACCGCCCCAGTATGTG AGGTCGTGGAGGCTACGGGCCTCAGACCGCCCCAGTATGTG < 41bp 0.724294073386266 0.481546519864323 0.04064861 0.03694287 prediction 0.448588146772532 Functional Loss - MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8486815 chr19:8486818 nonsynonymous SNV 0.411 2 24 hm5C_associated_SNPs_78881 0 0 0 0 1 MARCH2 chr19:8486900 5'GT 8486900 Upstream 83bp
chr13 113824825 113824825 1 + G T HNSC 113824822 + 113824802 113824842 41 GCAAAATGTTCACTGTTACACAGGAATATTACTGTAAAAAC GCAAAATGTTCACTGTTACACAGTAATATTACTGTAAAAAC < 41bp 0.724292116377024 0.352311452222269 0.35685194 0.1385062 prediction 0.448584232754048 Functional Loss - PROZ ENSG00000126231 CDS Human protein_coding chr13:113824822 chr13:113824825 nonsynonymous SNV 0.135 1 24 hm5C_associated_SNPs_78883 0 0 0 0 2 PROZ chr13:113824727 3'AG 113824727 Downstream 99bp
chr13 113824825 113824825 1 + G T HNSC 113824822 + 113824802 113824842 41 GCAAAATGTTCACTGTTACACAGGAATATTACTGTAAAAAC GCAAAATGTTCACTGTTACACAGTAATATTACTGTAAAAAC < 41bp 0.724292116377024 0.352311452222269 0.35685194 0.1385062 prediction 0.448584232754048 Functional Loss - PROZ ENSG00000126231 CDS Human protein_coding chr13:113824822 chr13:113824825 nonsynonymous SNV 0.135 1 24 hm5C_associated_SNPs_78883 0 0 0 0 2 PROZ chr13:113824844 5'GT 113824844 Upstream 20bp
chr3 158310241 158310241 1 + C T STAD 158310239 + 158310219 158310259 41 ACAGTGAGTCCATTCTTGCACACCGAGAAAATATGCGACAG ACAGTGAGTCCATTCTTGCACATCGAGAAAATATGCGACAG < 41bp 0.724290796478225 0.455169965115901 0.07290918 0.07409251 prediction 0.448581592956451 Functional Loss - MLF1 ENSG00000178053 CDS Human protein_coding chr3:158310239 chr3:158310241 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_78885 0 0 0 0 1 MLF1 chr3:158310223 3'AG 158310223 Downstream 19bp
chr2 158974403 158974403 1 + G A STAD 158974400 + 158974380 158974420 41 CATCAAATTACTCCACCATGCACGGTGCTGCGATGTCACCA CATCAAATTACTCCACCATGCACAGTGCTGCGATGTCACCA < 41bp 0.764296522258703 0.540007185070327 0.07084802 0.036424756 prediction 0.448578674376751 Functional Loss - UPP2 ENSG00000007001 CDS Human protein_coding chr2:158974400 chr2:158974403 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_78886 0 0 0 0 2 UPP2 chr2:158974336 3'AG 158974336 Downstream 68bp
chr2 158974403 158974403 1 + G A STAD 158974400 + 158974380 158974420 41 CATCAAATTACTCCACCATGCACGGTGCTGCGATGTCACCA CATCAAATTACTCCACCATGCACAGTGCTGCGATGTCACCA < 41bp 0.764296522258703 0.540007185070327 0.07084802 0.036424756 prediction 0.448578674376751 Functional Loss - UPP2 ENSG00000007001 CDS Human protein_coding chr2:158974400 chr2:158974403 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_78886 0 0 0 0 2 UPP2 chr2:158974450 5'GT 158974450 Upstream 48bp
chr14 67850087 67850087 1 + T C PRAD 67850086 + 67850066 67850106 41 TTGCGAGGCAGATGGAGAGGCTTGAAAGAGAAAATGCCGAA TTGCGAGGCAGATGGAGAGGCCTGAAAGAGAAAATGCCGAA < 41bp 0.724283426160375 0.48420483592877 0.53011715 0.56626403 prediction 0.44856685232075 Functional Loss - EIF2S1 ENSG00000134001 CDS Human protein_coding chr14:67850086 chr14:67850087 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_78889 0 0 1 0 1 EIF2S1 chr14:67850032 3'AG 67850032 Downstream 56bp
chr15 79177400 79177400 1 + G C rs530301201 79177396 + 79177376 79177416 41 CCTGTTCCTGAAGGAGCTCCCTCAGTACACCACCCCCTCCT CCTGTTCCTGAAGGAGCTCCCTCACTACACCACCCCCTCCT < 41bp 0.724277447765428 0.438613220923579 0.046797574 0.07058865 prediction 0.448554895530856 Functional Loss - MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79177396 chr15:79177400 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_78891 0 0 0 0 2 MORF4L1 chr15:79177309 3'AG 79177309 Downstream 92bp
chr15 79177400 79177400 1 + G C rs530301201 79177396 + 79177376 79177416 41 CCTGTTCCTGAAGGAGCTCCCTCAGTACACCACCCCCTCCT CCTGTTCCTGAAGGAGCTCCCTCACTACACCACCCCCTCCT < 41bp 0.724277447765428 0.438613220923579 0.046797574 0.07058865 prediction 0.448554895530856 Functional Loss - MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79177396 chr15:79177400 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_78891 0 0 0 0 2 MORF4L1 chr15:79177425 5'GT 79177425 Upstream 26bp
chr17 2923829 2923829 1 + C T STAD 2923827 + 2923807 2923847 41 CGGAGTCCCATCAAGCGACGCTCGGGGCTCTTCCCCCGCCT CGGAGTCCCATCAAGCGACGCTTGGGGCTCTTCCCCCGCCT < 41bp 0.724276676439254 0.443908613861105 0.7594757 0.77972865 prediction 0.448553352878508 Functional Loss - RAP1GAP2 ENSG00000132359 CDS Human protein_coding chr17:2923827 chr17:2923829 nonsynonymous SNV 0.947 4 23 hm5C_associated_SNPs_78892 0 0 1 0 2 RAP1GAP2 chr17:2923771 3'AG 2923771 Downstream 59bp
chr17 2923829 2923829 1 + C T STAD 2923827 + 2923807 2923847 41 CGGAGTCCCATCAAGCGACGCTCGGGGCTCTTCCCCCGCCT CGGAGTCCCATCAAGCGACGCTTGGGGCTCTTCCCCCGCCT < 41bp 0.724276676439254 0.443908613861105 0.7594757 0.77972865 prediction 0.448553352878508 Functional Loss - RAP1GAP2 ENSG00000132359 CDS Human protein_coding chr17:2923827 chr17:2923829 nonsynonymous SNV 0.947 4 23 hm5C_associated_SNPs_78892 0 0 1 0 2 RAP1GAP2 chr17:2923889 5'GT 2923889 Upstream 61bp
chr17 47236476 47236476 1 + G A LUAD 47236473 + 47236453 47236493 41 AGTGTGGTGCAGGGCAGAGGCCAGAAGCAGCTGATCATTTC AGTGTGGTGCAGGGCAGAGGCCAAAAGCAGCTGATCATTTC < 41bp 0.752121954481469 0.527846268876985 0.79059404 0.865316 prediction 0.448551371208967 Functional Loss - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47236473 chr17:47236476 synonymous SNV . 0 24 hm5C_associated_SNPs_78893 0 0 0 0 1 B4GALNT2 chr17:47236399 3'AG 47236399 Downstream 78bp
chr1 67816686 67816686 1 + G A SKCM 67816683 + 67816663 67816703 41 GACCACAGTCATTCCTAGAACCGGAAATTGGGCTGTGGCTG GACCACAGTCATTCCTAGAACCGAAAATTGGGCTGTGGCTG < 41bp 0.724274496797353 0.490557635803583 0.3621468 0.103308976 prediction 0.448548993594705 Functional Loss - IL12RB2 ENSG00000081985 CDS Human protein_coding chr1:67816683 chr1:67816686 nonsynonymous SNV 0.101 0 24 hm5C_associated_SNPs_78894 0 0 0 0 1 IL12RB2 chr1:67816772 5'GT 67816772 Upstream 87bp
chr12 105536926 105536926 1 + G A rs181933198 105536923 + 105536903 105536943 41 AGTACATGTTCAGTGCTTTGCGCGACTGTGTACCTGCTATG AGTACATGTTCAGTGCTTTGCGCAACTGTGTACCTGCTATG < 41bp 0.743365131135622 0.519091874727856 0.114290684 0.04789284 prediction 0.448546512815532 Functional Loss - WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105536923 chr12:105536926 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_78895 0 0 1 0 2 WASHC4 chr12:105536905 3'AG 105536905 Downstream 22bp
chr12 105536926 105536926 1 + G A rs181933198 105536923 + 105536903 105536943 41 AGTACATGTTCAGTGCTTTGCGCGACTGTGTACCTGCTATG AGTACATGTTCAGTGCTTTGCGCAACTGTGTACCTGCTATG < 41bp 0.743365131135622 0.519091874727856 0.114290684 0.04789284 prediction 0.448546512815532 Functional Loss - WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105536923 chr12:105536926 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_78895 0 0 1 0 2 WASHC4 chr12:105537021 5'GT 105537021 Upstream 96bp
chr12 132425853 132425853 1 + G A COAD 132425850 + 132425830 132425870 41 CCCCTAGGACTGAAGCGGGTCACGGGCGGGTTTAACTCCAA CCCCTAGGACTGAAGCGGGTCACAGGCGGGTTTAACTCCAA < 41bp 0.724262985959659 0.492469556297243 0.8914266 0.8942829 prediction 0.448525971919319 Functional Loss - PUS1 ENSG00000177192 CDS Human protein_coding chr12:132425850 chr12:132425853 synonymous SNV . 0 24 hm5C_associated_SNPs_78903 0 0 1 0 1 PUS1 chr12:132425837 3'AG 132425837 Downstream 17bp
chr19 45284515 45284515 1 + T C LUSC 45284514 + 45284494 45284534 41 CCTCCTGGGCACCTGCCACCCTGTGGAACCAGGCTGCACAG CCTCCTGGGCACCTGCCACCCCGTGGAACCAGGCTGCACAG < 41bp 0.796510418470725 0.572251082487201 0.36604497 0.49906018 prediction 0.448518671967049 Functional Loss - CBLC ENSG00000142273 CDS Human protein_coding chr19:45284514 chr19:45284515 synonymous SNV . 0 22 hm5C_associated_SNPs_78905 0 0 0 0 1 CBLC chr19:45284464 3'AG 45284464 Downstream 52bp
chr5 149008519 149008519 1 + C T OV 149008517 + 149008497 149008537 41 GCTCTAGTGCCCTCTATTCCCACCATGAACCAGGTGAGTAT GCTCTAGTGCCCTCTATTCCCATCATGAACCAGGTGAGTAT < 41bp 0.840657054328902 0.616398094100622 0.07057032 0.08657524 prediction 0.448517920456561 Functional Loss - ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:149008517 chr5:149008519 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_78907 0 0 0 0 1 ARHGEF37 chr5:149008529 5'GT 149008529 Upstream 11bp
chr10 23399191 23399191 1 + G T BLCA 23399189 + 23399169 23399209 41 AGCCTTTCAGTGGGATCTACCTGAATAACAAGGAAGCAGGA AGCCTTTCAGTGGGATCTACCTTAATAACAAGGAAGCAGGA < 41bp 0.724251165009949 0.388601911452094 0.15268663 0.036320418 prediction 0.448502330019897 Functional Loss - MSRB2 ENSG00000148450 CDS Human protein_coding chr10:23399189 chr10:23399191 synonymous SNV . 0 23 hm5C_associated_SNPs_78911 0 0 0 0 2 MSRB2 chr10:23399171 3'AG 23399171 Downstream 21bp
chr10 23399191 23399191 1 + G T BLCA 23399189 + 23399169 23399209 41 AGCCTTTCAGTGGGATCTACCTGAATAACAAGGAAGCAGGA AGCCTTTCAGTGGGATCTACCTTAATAACAAGGAAGCAGGA < 41bp 0.724251165009949 0.388601911452094 0.15268663 0.036320418 prediction 0.448502330019897 Functional Loss - MSRB2 ENSG00000148450 CDS Human protein_coding chr10:23399189 chr10:23399191 synonymous SNV . 0 23 hm5C_associated_SNPs_78911 0 0 0 0 2 MSRB2 chr10:23399247 5'GT 23399247 Upstream 57bp
chr3 38182689 38182689 1 + T C UCS 38182688 + 38182668 38182708 41 AGAAAGAGTTCCCCAGCATCCTGAGGTTCATCACTGTCTGC AGAAAGAGTTCCCCAGCATCCCGAGGTTCATCACTGTCTGC < 41bp 0.752191745125112 0.527943789434419 0.1399793 0.2650611 prediction 0.448495911381386 Functional Loss - MYD88 ENSG00000172936 CDS Human protein_coding chr3:38182688 chr3:38182689 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_78912 0 0 1 0 1 MYD88 chr3:38182623 3'AG 38182623 Downstream 67bp
chr21 47531471 47531471 1 + G A rs111639540 47531468 + 47531448 47531488 41 GCCCAGCAGCAGGAGGTCATCTCGCCGGACACTACCGAGAG GCCCAGCAGCAGGAGGTCATCTCACCGGACACTACCGAGAG < 41bp 0.72424698298185 0.478323322632159 0.3084733 0.2805907 prediction 0.4484939659637 Functional Loss - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47531468 chr21:47531471 synonymous SNV . 0 24 hm5C_associated_SNPs_78913 3 0 0 0 1 COL6A2 chr21:47531505 5'GT 47531505 Upstream 35bp
chr21 47531470 47531470 1 + C T SKCM 47531468 + 47531448 47531488 41 GCCCAGCAGCAGGAGGTCATCTCGCCGGACACTACCGAGAG GCCCAGCAGCAGGAGGTCATCTTGCCGGACACTACCGAGAG < 41bp 0.72424698298185 0.464864469089708 0.3084733 0.15429485 prediction 0.4484939659637 Functional Loss - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47531468 chr21:47531470 nonsynonymous SNV 0.142 0 23 hm5C_associated_SNPs_78914 0 0 0 0 1 COL6A2 chr21:47531505 5'GT 47531505 Upstream 36bp
chr14 96552940 96552940 1 + G A rs369821457 96552937 + 96552917 96552957 41 AACTCCTCTGCCAATGTCCACGCGGCTGCCAATGGCCAGGG AACTCCTCTGCCAATGTCCACGCAGCTGCCAATGGCCAGGG < 41bp 0.753908994314854 0.529664994769763 0.30245373 0.08700898 prediction 0.448487999090182 Functional Loss - C14orf132 ENSG00000227051 UTR5 Human protein_coding chr14:96552937 chr14:96552940 . . 0 24 hm5C_associated_SNPs_78915 0 0 0 0 1 C14orf132 chr14:96552848 3'AG 96552848 Downstream 93bp
chr1 179035954 179035954 1 + G A UCEC 179035951 + 179035931 179035971 41 TCAGCTTTGGGAACCCCTCGCTGGATGAAAGAAGCATTCTT TCAGCTTTGGGAACCCCTCGCTGAATGAAAGAAGCATTCTT < 41bp 0.724239125887862 0.492575959749229 0.29369247 0.058639467 prediction 0.448478251775724 Functional Loss - FAM20B ENSG00000116199 CDS Human protein_coding chr1:179035951 chr1:179035954 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_78919 0 0 1 0 2 FAM20B chr1:179035935 3'AG 179035935 Downstream 20bp
chr1 179035954 179035954 1 + G A UCEC 179035951 + 179035931 179035971 41 TCAGCTTTGGGAACCCCTCGCTGGATGAAAGAAGCATTCTT TCAGCTTTGGGAACCCCTCGCTGAATGAAAGAAGCATTCTT < 41bp 0.724239125887862 0.492575959749229 0.29369247 0.058639467 prediction 0.448478251775724 Functional Loss - FAM20B ENSG00000116199 CDS Human protein_coding chr1:179035951 chr1:179035954 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_78919 0 0 1 0 2 FAM20B chr1:179035994 5'GT 179035994 Upstream 41bp
chr19 14512260 14512260 1 + A T rs16979636 14512256 + 14512236 14512276 41 TGGAGACGTAGAGGCCCTGGCGCCACCTGTCCGGCACCTCA TGGAGACGTAGAGGCCCTGGCGCCTCCTGTCCGGCACCTCA < 41bp 0.724238373094461 0.379148918575157 0.27539825 0.1145919 prediction 0.448476746188923 Functional Loss - ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14512256 chr19:14512260 synonymous SNV . 0 25 hm5C_associated_SNPs_78920 0 0 1 0 1 ADGRE5 chr19:14512198 3'AG 14512198 Downstream 63bp
chr9 21854706 21854706 1 + G A UCEC 21854703 + 21854683 21854723 41 AATGGTCACAATCGAGGGACCTCGTTTTAGCTCCCGGGCAG AATGGTCACAATCGAGGGACCTCATTTTAGCTCCCGGGCAG < 41bp 0.745178669935702 0.520940456533074 0.07630178 0.04710713 prediction 0.448476426805257 Functional Loss - MTAP ENSG00000099810 CDS Human protein_coding chr9:21854703 chr9:21854706 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_78922 0 0 1 0 1 MTAP chr9:21854630 3'AG 21854630 Downstream 77bp
chr19 51645982 51645982 1 + G A UCEC 51645979 + 51645959 51645999 41 AGATGCCAGAATGAGTGATGCGGGGAGATACTTCTTTCGTA AGATGCCAGAATGAGTGATGCGGAGAGATACTTCTTTCGTA < 41bp 0.781569416707764 0.557331458729605 0.90980655 0.7973765 prediction 0.448475915956319 Functional Loss - SIGLEC7 ENSG00000168995 CDS Human protein_coding chr19:51645979 chr19:51645982 nonsynonymous SNV 0.002 3 24 hm5C_associated_SNPs_78923 0 0 0 0 1 SIGLEC7 chr19:51646059 5'GT 51646059 Upstream 78bp
chr19 58988846 58988846 1 + C T STAD 58988844 + 58988824 58988864 41 CCGAGATCCAGGCCTGGGTGCGCGGTCAGCGGCCAGGCAGT CCGAGATCCAGGCCTGGGTGCGTGGTCAGCGGCCAGGCAGT < 41bp 0.724233157076638 0.479545197228398 0.37249038 0.31058252 prediction 0.448466314153277 Functional Loss - ZNF446 ENSG00000083838 CDS Human protein_coding chr19:58988844 chr19:58988846 synonymous SNV . 0 23 hm5C_associated_SNPs_78925 0 0 0 0 1 ZNF446 chr19:58988927 5'GT 58988927 Upstream 82bp
chr13 113783900 113783900 1 + G A UCEC 113783897 + 113783877 113783917 41 CCTGCTCATACGAAGAGGCCCGCGAGGTCTTTGAGGACAGC CCTGCTCATACGAAGAGGCCCGCAAGGTCTTTGAGGACAGC < 41bp 0.786574146275446 0.562351556198153 0.35665125 0.13850182 prediction 0.448445180154586 Functional Loss - F10 ENSG00000126218 CDS Human protein_coding chr13:113783897 chr13:113783900 nonsynonymous SNV 0.068 5 24 hm5C_associated_SNPs_78930 0 0 1 0 1 F10 chr13:113783926 5'GT 113783926 Upstream 27bp
chr11 15247219 15247219 1 + G T OV 15247217 + 15247197 15247237 41 ACTGTGCCAAGAGGCCTCATCAGGGGAAGTCTTCCTACTGG ACTGTGCCAAGAGGCCTCATCATGGGAAGTCTTCCTACTGG < 41bp 0.909535522589913 0.68531510783615 0.9631181 0.9307318 prediction 0.448440829507526 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15247217 chr11:15247219 nonsynonymous SNV 0.955 4 23 hm5C_associated_SNPs_78931 0 0 0 0 1 INSC chr11:15247196 3'AG 15247196 Downstream 24bp
chr14 75348709 75348709 1 + C T HNSC 75348707 + 75348687 75348727 41 GCGTTCAGCCGCTCGCTCTCCGCCTTCCAGAAGGTACGGTC GCGTTCAGCCGCTCGCTCTCCGTCTTCCAGAAGGTACGGTC < 41bp 0.724218747989023 0.480235620498154 0.32835782 0.3017099 prediction 0.448437495978046 Functional Loss - DLST ENSG00000119689 CDS Human protein_coding chr14:75348707 chr14:75348709 nonsynonymous SNV 0.989 3 23 hm5C_associated_SNPs_78932 0 0 1 0 1 DLST chr14:75348719 5'GT 75348719 Upstream 11bp
chr6 29429798 29429798 1 + G T COAD 29429795 + 29429775 29429815 41 CCCCAGATGCTGGTCAACCTCTGGGGCCCAAAGAAGACCAT CCCCAGATGCTGGTCAACCTCTGTGGCCCAAAGAAGACCAT < 41bp 0.72421344400509 0.373845540413286 0.47848904 0.12824786 prediction 0.448426888010181 Functional Loss - OR2H1 ENSG00000204688 CDS Human protein_coding chr6:29429795 chr6:29429798 nonsynonymous SNV 0.987 2 24 hm5C_associated_SNPs_78937 0 0 0 0 1 OR2H1 chr6:29429781 3'AG 29429781 Downstream 18bp
chr22 38355455 38355455 1 + G A COAD 38355452 + 38355432 38355472 41 TGACCAAGTACGAGCGAGCCCGCGTGCTGGGCACCCGAGCG TGACCAAGTACGAGCGAGCCCGCATGCTGGGCACCCGAGCG < 41bp 0.799068230275769 0.57485951808654 0.4208135 0.32821193 prediction 0.448417424378459 Functional Loss - POLR2F ENSG00000100142 CDS Human protein_coding chr22:38355452 chr22:38355455 nonsynonymous SNV 0.972 4 24 hm5C_associated_SNPs_78939 0 0 1 0 1 POLR2F chr22:38355483 5'GT 38355483 Upstream 29bp
chr10 126673379 126673379 1 + G C LUSC 126673375 + 126673355 126673395 41 GAACAGCAAGAAAAACTGCTCAGGGAGTGGCTGGACTGCTG GAACAGCAAGAAAAACTGCTCAGGCAGTGGCTGGACTGCTG < 41bp 0.840651554139763 0.61644396779335 0.9319116 0.9075847 prediction 0.448415172692827 Functional Loss - ZRANB1 ENSG00000019995 CDS Human protein_coding chr10:126673375 chr10:126673379 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_78941 0 0 1 0 1 ZRANB1 chr10:126673343 3'AG 126673343 Downstream 37bp
chr2 155566166 155566166 1 + G A DLBC 155566163 + 155566143 155566183 41 TTCCCCTTGACCAACTTGAACTGGATGTAGGTTTTAGTACA TTCCCCTTGACCAACTTGAACTGAATGTAGGTTTTAGTACA < 41bp 0.763012944454776 0.538805406198777 0.43013728 0.22532985 prediction 0.448415076511998 Functional Loss - KCNJ3 ENSG00000162989 CDS Human protein_coding chr2:155566163 chr2:155566166 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_78942 0 0 0 0 1 KCNJ3 chr2:155566115 3'AG 155566115 Downstream 52bp
chrX 130215762 130215762 1 + C T UCEC 130215760 + 130215740 130215780 41 TCTTGGGAGGAGCCCCAGGACACAACCCCGACCGCAGGACG TCTTGGGAGGAGCCCCAGGACATAACCCCGACCGCAGGACG < 41bp 0.724204163801252 0.439630666424574 0.12616289 0.15030465 prediction 0.448408327602505 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130215760 chrX:130215762 synonymous SNV . 0 23 hm5C_associated_SNPs_78945 0 0 0 0 1 ARHGAP36 chrX:130215734 3'AG 130215734 Downstream 29bp
chr2 112751928 112751928 1 + G A rs7604639 112751925 + 112751905 112751945 41 AGTGAGGATTGCAGCCGTCACCAGAGGGGGAGTTGGGCCCT AGTGAGGATTGCAGCCGTCACCAAAGGGGGAGTTGGGCCCT < 41bp 0.800752487858743 0.576550840734109 0.90479666 0.6479682 prediction 0.448403294249267 Functional Loss - MERTK ENSG00000153208 CDS Human protein_coding chr2:112751925 chr2:112751928 nonsynonymous SNV 0.328 0 24 hm5C_associated_SNPs_78947 1 0 1 0 1 MERTK chr2:112751981 5'GT 112751981 Upstream 54bp
chr19 15224460 15224460 1 + G A COAD 15224457 + 15224437 15224477 41 TGCACCTGCCGCTGGCAGACCCCGAAGTGGTGACTCGGCCC TGCACCTGCCGCTGGCAGACCCCAAAGTGGTGACTCGGCCC < 41bp 0.724200328267926 0.471359698917139 0.3553964 0.33536214 prediction 0.448400656535853 Functional Loss - SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15224457 chr19:15224460 nonsynonymous SNV 0.787 0 24 hm5C_associated_SNPs_78948 0 0 1 0 1 SYDE1 chr19:15224371 3'AG 15224371 Downstream 90bp
chrX 69647206 69647206 1 + A T UCEC 69647202 + 69647182 69647222 41 CTCATGCATGATGAGCACCTCAGCAGGACCACGAATGTAGC CTCATGCATGATGAGCACCTCAGCTGGACCACGAATGTAGC < 41bp 0.724195137522015 0.389953601036452 0.18493345 0.15706387 prediction 0.448390275044031 Functional Loss - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69647202 chrX:69647206 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_78951 0 0 0 0 1 GDPD2 chrX:69647163 3'AG 69647163 Downstream 44bp
chr11 35160908 35160908 1 + G T SARC 35160905 + 35160885 35160925 41 TCTGCCTCGTGCCGCTGAGCCTGGCGCAGATCGGTGAGTGC TCTGCCTCGTGCCGCTGAGCCTGTCGCAGATCGGTGAGTGC < 41bp 0.724186436589021 0.347193781022637 0.5835508 0.28166503 prediction 0.448372873178042 Functional Loss - CD44 ENSG00000026508 CDS Human protein_coding chr11:35160905 chr11:35160908 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_78954 0 0 0 0 1 CD44 chr11:35160917 5'GT 35160917 Upstream 10bp
chr2 74741130 74741130 1 + G C rs575128806 74741126 + 74741106 74741146 41 CTCTTCCTGGGCCTGCAGCTCACCGGGCGCCGTTCCCCAGC CTCTTCCTGGGCCTGCAGCTCACCCGGCGCCGTTCCCCAGC < 41bp 0.724183101663715 0.428845185993149 0.5804062 0.24257916 prediction 0.44836620332743 Functional Loss - TLX2 ENSG00000115297 upstream Human protein_coding chr2:74741126 chr2:74741130 . . 0 25 hm5C_associated_SNPs_78955 0 0 0 0 1 TLX2 chr2:74741124 3'AG 74741124 Downstream 7bp
chr6 74201964 74201964 1 + G A COAD 74201961 + 74201941 74201981 41 TTTCATATATTTGCAGAGCTCTCGATGTTCTGAAGTATGAG TTTCATATATTTGCAGAGCTCTCAATGTTCTGAAGTATGAG < 41bp 0.725059356521595 0.500876678513841 0.60501456 0.11542195 prediction 0.448365356015508 Functional Loss - MTO1 ENSG00000135297 CDS Human protein_coding chr6:74201961 chr6:74201964 nonsynonymous SNV 0.968 2 24 hm5C_associated_SNPs_78956 0 0 1 0 1 MTO1 chr6:74201957 3'AG 74201957 Downstream 8bp
chr12 56863068 56863068 1 + C T rs117958275 56863066 + 56863046 56863086 41 AGTGGCAGATGTGGACATGTCCCGGGATAGCTGCATTGGTG AGTGGCAGATGTGGACATGTCCTGGGATAGCTGCATTGGTG < 41bp 0.82049321669833 0.596314667155701 0.46123633 0.5304643 prediction 0.448357099085259 Functional Loss - SPRYD4 ENSG00000176422 CDS Human protein_coding chr12:56863066 chr12:56863068 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_78959 0 0 1 0 1 SPRYD4 chr12:56862992 3'AG 56862992 Downstream 77bp
chr1 18703418 18703418 1 + C T ACC 18703416 + 18703396 18703436 41 GTTCCCGCCGAGCTCAATGGCTCCATGTATCGCTGCACCGC GTTCCCGCCGAGCTCAATGGCTTCATGTATCGCTGCACCGC < 41bp 0.863481776304988 0.639303542973554 0.93602276 0.13284683 prediction 0.448356466662868 Functional Loss - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18703416 chr1:18703418 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_78960 0 0 0 0 1 IGSF21 chr1:18703486 5'GT 18703486 Upstream 69bp
chr18 61627476 61627476 1 + C T SKCM 61627474 + 61627454 61627494 41 TGATACAGAGAAGTCCACAACACGTGTAAACTCCTGGGTTG TGATACAGAGAAGTCCACAACATGTGTAAACTCCTGGGTTG < 41bp 0.813883445175577 0.589710965956878 0.36148667 0.28199983 prediction 0.448344958437399 Functional Loss - HMSD ENSG00000221887 CDS Human protein_coding chr18:61627474 chr18:61627476 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_78962 0 0 0 0 1 HMSD chr18:61627509 5'GT 61627509 Upstream 34bp
chr3 122296647 122296647 1 + G A rs7632426 122296644 + 122296624 122296664 41 GGGAGGCGGGGAGCGTGCTGCCGGCCGGGAACCGTGGGGCG GGGAGGCGGGGAGCGTGCTGCCGACCGGGAACCGTGGGGCG < 41bp 0.800683559831423 0.576512408725329 0.45931268 0.2581227 prediction 0.448342302212187 Functional Loss - PARP15 ENSG00000173200 CDS Human protein_coding chr3:122296644 chr3:122296647 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_78963 0 0 0 0 1 PARP15 chr3:122296700 5'GT 122296700 Upstream 54bp
chr19 8431137 8431137 1 + C T BLCA 8431135 + 8431115 8431155 41 CCATGAGGTGGCCAAGCCTGCCCGAAGAAAGAGGCTGCCCG CCATGAGGTGGCCAAGCCTGCCTGAAGAAAGAGGCTGCCCG < 41bp 0.724167273936517 0.458468687253172 0.074863315 0.06861383 prediction 0.448334547873033 Functional Loss - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8431135 chr19:8431137 stopgain 0.033 0 23 hm5C_associated_SNPs_78965 0 0 1 0 2 ANGPTL4 chr19:8431086 3'AG 8431086 Downstream 52bp
chr19 8431137 8431137 1 + C T BLCA 8431135 + 8431115 8431155 41 CCATGAGGTGGCCAAGCCTGCCCGAAGAAAGAGGCTGCCCG CCATGAGGTGGCCAAGCCTGCCTGAAGAAAGAGGCTGCCCG < 41bp 0.724167273936517 0.458468687253172 0.074863315 0.06861383 prediction 0.448334547873033 Functional Loss - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8431135 chr19:8431137 stopgain 0.033 0 23 hm5C_associated_SNPs_78965 0 0 1 0 2 ANGPTL4 chr19:8431203 5'GT 8431203 Upstream 67bp
chr19 8431138 8431138 1 + G A UCEC 8431135 + 8431115 8431155 41 CCATGAGGTGGCCAAGCCTGCCCGAAGAAAGAGGCTGCCCG CCATGAGGTGGCCAAGCCTGCCCAAAGAAAGAGGCTGCCCG < 41bp 0.724167273936517 0.479202884844098 0.074863315 0.028821707 prediction 0.448334547873033 Functional Loss - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8431135 chr19:8431138 nonsynonymous SNV 0.036 0 24 hm5C_associated_SNPs_78966 0 0 1 0 2 ANGPTL4 chr19:8431086 3'AG 8431086 Downstream 53bp
chr19 8431138 8431138 1 + G A UCEC 8431135 + 8431115 8431155 41 CCATGAGGTGGCCAAGCCTGCCCGAAGAAAGAGGCTGCCCG CCATGAGGTGGCCAAGCCTGCCCAAAGAAAGAGGCTGCCCG < 41bp 0.724167273936517 0.479202884844098 0.074863315 0.028821707 prediction 0.448334547873033 Functional Loss - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8431135 chr19:8431138 nonsynonymous SNV 0.036 0 24 hm5C_associated_SNPs_78966 0 0 1 0 2 ANGPTL4 chr19:8431203 5'GT 8431203 Upstream 66bp
chr16 58540489 58540489 1 + G A UCEC 58540486 + 58540466 58540506 41 CCGGCCTAACTAGCACTTTACCCGACACGGTGCTCTCCCAC CCGGCCTAACTAGCACTTTACCCAACACGGTGCTCTCCCAC < 41bp 0.724166990587702 0.478655227773146 0.13117626 0.220341 prediction 0.448333981175404 Functional Loss - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58540486 chr16:58540489 nonsynonymous SNV 0.519 3 24 hm5C_associated_SNPs_78967 0 0 1 0 2 NDRG4 chr16:58540462 3'AG 58540462 Downstream 28bp
chr16 58540489 58540489 1 + G A UCEC 58540486 + 58540466 58540506 41 CCGGCCTAACTAGCACTTTACCCGACACGGTGCTCTCCCAC CCGGCCTAACTAGCACTTTACCCAACACGGTGCTCTCCCAC < 41bp 0.724166990587702 0.478655227773146 0.13117626 0.220341 prediction 0.448333981175404 Functional Loss - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58540486 chr16:58540489 nonsynonymous SNV 0.519 3 24 hm5C_associated_SNPs_78967 0 0 1 0 2 NDRG4 chr16:58540518 5'GT 58540518 Upstream 30bp
chr22 21377274 21377274 1 + G T LUAD 21377271 + 21377251 21377291 41 GTGGTGTTCAATGGGACCCACAGGACCTGTGAGATCTGGAG GTGGTGTTCAATGGGACCCACAGTACCTGTGAGATCTGGAG < 41bp 0.724164136171334 0.312489276592804 0.35952693 0.100648195 prediction 0.448328272342667 Functional Loss - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21377271 chr22:21377274 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_78968 0 0 0 0 2 P2RX6 chr22:21377231 3'AG 21377231 Downstream 44bp
chr22 21377274 21377274 1 + G T LUAD 21377271 + 21377251 21377291 41 GTGGTGTTCAATGGGACCCACAGGACCTGTGAGATCTGGAG GTGGTGTTCAATGGGACCCACAGTACCTGTGAGATCTGGAG < 41bp 0.724164136171334 0.312489276592804 0.35952693 0.100648195 prediction 0.448328272342667 Functional Loss - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21377271 chr22:21377274 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_78968 0 0 0 0 2 P2RX6 chr22:21377324 5'GT 21377324 Upstream 51bp
chr1 46739130 46739130 1 + G T SARC 46739128 + 46739108 46739148 41 GCTCTAAGGCCCTGGAGCCCCAGCTGTCAGGTGACCCTTTT GCTCTAAGGCCCTGGAGCCCCATCTGTCAGGTGACCCTTTT < 41bp 0.724164035192442 0.370533400853864 0.42545733 0.07902166 prediction 0.448328070384883 Functional Loss - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739128 chr1:46739130 nonsynonymous SNV 0.989 1 23 hm5C_associated_SNPs_78969 0 0 1 0 1 RAD54L chr1:46739137 5'GT 46739137 Upstream 8bp
chr11 45827369 45827369 1 + T C SKCM 45827368 + 45827348 45827388 41 CTACCATGAATAGGGCCCCTCTGAAGCGGTCCAGGATCCTG CTACCATGAATAGGGCCCCTCCGAAGCGGTCCAGGATCCTG < 41bp 0.762621909167819 0.53846154239989 0.087803125 0.10804537 prediction 0.448320733535857 Functional Loss - SLC35C1 ENSG00000181830 CDS Human protein_coding chr11:45827368 chr11:45827369 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_78973 0 0 0 0 1 SLC35C1 chr11:45827361 3'AG 45827361 Downstream 9bp
chr1 86916377 86916377 1 + G A SKCM 86916374 + 86916354 86916394 41 GCACCCCAGCCCACTCTATTCCAGGGAGTCATGCTATGTAT GCACCCCAGCCCACTCTATTCCAAGGAGTCATGCTATGTAT < 41bp 0.724141247399554 0.479497983303047 0.8956399 0.25549215 prediction 0.448282494799109 Functional Loss - CLCA2 ENSG00000137975 CDS Human protein_coding chr1:86916374 chr1:86916377 nonsynonymous SNV 0.984 0 24 hm5C_associated_SNPs_78980 0 0 0 0 1 CLCA2 chr1:86916416 5'GT 86916416 Upstream 40bp
chr11 34680115 34680115 1 + G A GBM 34680112 + 34680092 34680132 41 CTCACTTATGGGAATTCATCCGCGACATCCTCTTGAACCCA CTCACTTATGGGAATTCATCCGCAACATCCTCTTGAACCCA < 41bp 0.729411619456606 0.505276011928702 0.61626536 0.30039278 prediction 0.448271215055809 Functional Loss - EHF ENSG00000135373 CDS Human protein_coding chr11:34680112 chr11:34680115 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_78982 0 0 0 0 1 EHF chr11:34680080 3'AG 34680080 Downstream 36bp
chr8 120429208 120429208 1 + G T LUAD 120429205 + 120429185 120429225 41 AGCAACCAGACTGGCATCTGCACGGGTAATCCTGCTCCCTC AGCAACCAGACTGGCATCTGCACTGGTAATCCTGCTCCCTC < 41bp 0.931951650679286 0.70782213763085 0.9121691 0.34346467 prediction 0.448259026096872 Functional Loss - NOV ENSG00000136999 CDS Human protein_coding chr8:120429205 chr8:120429208 synonymous SNV . 0 24 hm5C_associated_SNPs_78985 0 0 0 0 1 NOV chr8:120429209 5'GT 120429209 Upstream 2bp
chr22 29383151 29383151 1 + G T UCEC 29383149 + 29383129 29383169 41 AGTGGTGAAGCTGGAACAGCCAGAATTGGACCCGAAACCAT AGTGGTGAAGCTGGAACAGCCATAATTGGACCCGAAACCAT < 41bp 0.724129214728163 0.374991834434282 0.44624686 0.3295158 prediction 0.448258429456327 Functional Loss - ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29383149 chr22:29383151 stopgain 1.000 1 23 hm5C_associated_SNPs_78986 0 0 1 0 2 ZNRF3 chr22:29383064 3'AG 29383064 Downstream 88bp
chr22 29383151 29383151 1 + G T UCEC 29383149 + 29383129 29383169 41 AGTGGTGAAGCTGGAACAGCCAGAATTGGACCCGAAACCAT AGTGGTGAAGCTGGAACAGCCATAATTGGACCCGAAACCAT < 41bp 0.724129214728163 0.374991834434282 0.44624686 0.3295158 prediction 0.448258429456327 Functional Loss - ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29383149 chr22:29383151 stopgain 1.000 1 23 hm5C_associated_SNPs_78986 0 0 1 0 2 ZNRF3 chr22:29383189 5'GT 29383189 Upstream 39bp
chrX 150841117 150841117 1 + G A SKCM 150841114 + 150841094 150841134 41 AAGATGAAAACTGTGGGCAACAGGAAGATGAGAGTCAAAGG AAGATGAAAACTGTGGGCAACAGAAAGATGAGAGTCAAAGG < 41bp 0.76341009239919 0.539282982811185 0.5461556 0.36330855 prediction 0.448254219176009 Functional Loss - PASD1 ENSG00000166049 CDS Human protein_coding chrX:150841114 chrX:150841117 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_78988 0 0 0 0 1 PASD1 chrX:150841133 5'GT 150841133 Upstream 17bp
chr2 174229714 174229714 1 + G A SKCM 174229711 + 174229691 174229731 41 AGGAAGACCGTGGATGGCTACATGAATGTGAGTTCTCCGCA AGGAAGACCGTGGATGGCTACATAAATGTGAGTTCTCCGCA < 41bp 0.724121059236401 0.486061598479556 0.32497844 0.22045732 prediction 0.448242118472803 Functional Loss - CDCA7 ENSG00000144354 CDS Human protein_coding chr2:174229711 chr2:174229714 nonsynonymous SNV 0.156 0 24 hm5C_associated_SNPs_78991 0 0 1 0 1 CDCA7 chr2:174229717 5'GT 174229717 Upstream 4bp
chr9 116268707 116268707 1 + C T UCEC 116268705 + 116268685 116268725 41 GCAGGGCTGCAGCAGCTGGACACGGTGCTGCAGCTGAATGA GCAGGGCTGCAGCAGCTGGACATGGTGCTGCAGCTGAATGA < 41bp 0.795516849123489 0.57139700098464 0.19719112 0.16785073 prediction 0.448239696277698 Functional Loss - RGS3 ENSG00000138835 CDS Human protein_coding chr9:116268705 chr9:116268707 nonsynonymous SNV 0.992 3 23 hm5C_associated_SNPs_78992 0 0 1 0 2 RGS3 chr9:116268668 3'AG 116268668 Downstream 40bp
chr9 116268707 116268707 1 + C T UCEC 116268705 + 116268685 116268725 41 GCAGGGCTGCAGCAGCTGGACACGGTGCTGCAGCTGAATGA GCAGGGCTGCAGCAGCTGGACATGGTGCTGCAGCTGAATGA < 41bp 0.795516849123489 0.57139700098464 0.19719112 0.16785073 prediction 0.448239696277698 Functional Loss - RGS3 ENSG00000138835 CDS Human protein_coding chr9:116268705 chr9:116268707 nonsynonymous SNV 0.992 3 23 hm5C_associated_SNPs_78992 0 0 1 0 2 RGS3 chr9:116268773 5'GT 116268773 Upstream 67bp
chr7 102105566 102105566 1 + G A rs79978502 102105563 + 102105543 102105583 41 GCGCGGCTGCTAATGCAGCGCGGGCGCCCCAAGAGCGACCG GCGCGGCTGCTAATGCAGCGCGGACGCCCCAAGAGCGACCG < 41bp 0.762842082827355 0.538722256531428 0.57882786 0.26649165 prediction 0.448239652591855 Functional Loss - LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102105563 chr7:102105566 synonymous SNV . 0 24 hm5C_associated_SNPs_78993 0 0 1 0 1 LRWD1 chr7:102105607 5'GT 102105607 Upstream 42bp
chr2 113951501 113951501 1 + G A HNSC 113951498 + 113951478 113951518 41 CTGAATGGGCTGAGGGATGGCGGGAACTTCCCCAAGGAGCT CTGAATGGGCTGAGGGATGGCGGAAACTTCCCCAAGGAGCT < 41bp 0.781168100215946 0.557050146941334 0.7453845 0.5713191 prediction 0.448235906549224 Functional Loss - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113951498 chr2:113951501 synonymous SNV . 0 24 hm5C_associated_SNPs_78996 0 0 1 0 2 PSD4 chr2:113951436 3'AG 113951436 Downstream 66bp
chr2 113951501 113951501 1 + G A HNSC 113951498 + 113951478 113951518 41 CTGAATGGGCTGAGGGATGGCGGGAACTTCCCCAAGGAGCT CTGAATGGGCTGAGGGATGGCGGAAACTTCCCCAAGGAGCT < 41bp 0.781168100215946 0.557050146941334 0.7453845 0.5713191 prediction 0.448235906549224 Functional Loss - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113951498 chr2:113951501 synonymous SNV . 0 24 hm5C_associated_SNPs_78996 0 0 1 0 2 PSD4 chr2:113951525 5'GT 113951525 Upstream 25bp
chr2 103148843 103148843 1 + G A rs549137706 103148840 + 103148820 103148860 41 CATCACGTTCAGCGCATGCTCTCGGATAGGGTCACTTCAGA CATCACGTTCAGCGCATGCTCTCAGATAGGGTCACTTCAGA < 41bp 0.763922941829498 0.5398058219764 0.1734471 0.046102017 prediction 0.448234239706196 Functional Loss - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103148840 chr2:103148843 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_78997 0 0 0 0 1 SLC9A4 chr2:103148789 3'AG 103148789 Downstream 55bp
chr11 111853203 111853203 1 + G T UCEC 111853201 + 111853181 111853221 41 GGAAGCAAAGAAAATGATATCAGGACTACAGGTAGCTCTCT GGAAGCAAAGAAAATGATATCATGACTACAGGTAGCTCTCT < 41bp 0.724116934507381 0.389487190402829 0.9004239 0.09616071 prediction 0.448233869014762 Functional Loss - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111853201 chr11:111853203 stopgain 0.996 0 23 hm5C_associated_SNPs_78998 0 0 1 0 2 DIXDC1;DIXDC1 chr11:111853107 3'AG 111853107 Downstream 97bp
chr11 111853203 111853203 1 + G T UCEC 111853201 + 111853181 111853221 41 GGAAGCAAAGAAAATGATATCAGGACTACAGGTAGCTCTCT GGAAGCAAAGAAAATGATATCATGACTACAGGTAGCTCTCT < 41bp 0.724116934507381 0.389487190402829 0.9004239 0.09616071 prediction 0.448233869014762 Functional Loss - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111853201 chr11:111853203 stopgain 0.996 0 23 hm5C_associated_SNPs_78998 0 0 1 0 2 DIXDC1 chr11:111853211 5'GT 111853211 Upstream 9bp
chr1 36056256 36056256 1 + G A rs114404250 36056253 + 36056233 36056273 41 AGGAGAGGCCGTGCACCTGGCCCGAGACTTCGGTTACGTCT AGGAGAGGCCGTGCACCTGGCCCAAGACTTCGGTTACGTCT < 41bp 0.724116004403974 0.483746007440897 0.34073126 0.15342131 prediction 0.448232008807948 Functional Loss - TFAP2E ENSG00000116819 CDS Human protein_coding chr1:36056253 chr1:36056256 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_78999 0 0 0 0 1 TFAP2E chr1:36056235 3'AG 36056235 Downstream 22bp
chr6 10961579 10961579 1 + A T STAD 10961575 + 10961555 10961595 41 GCTTTCAAAATTTGGTTCTTCAAGAGTTGAGCAGTCTTAAG GCTTTCAAAATTTGGTTCTTCAAGTGTTGAGCAGTCTTAAG < 41bp 0.72411067883741 0.403464867308558 0.375475 0.43781295 prediction 0.44822135767482 Functional Loss - SYCP2L ENSG00000153157 CDS Human protein_coding chr6:10961575 chr6:10961579 nonsynonymous SNV 0.868 4 25 hm5C_associated_SNPs_79002 0 0 1 0 2 SYCP2L chr6:10961538 3'AG 10961538 Downstream 42bp
chr6 10961579 10961579 1 + A T STAD 10961575 + 10961555 10961595 41 GCTTTCAAAATTTGGTTCTTCAAGAGTTGAGCAGTCTTAAG GCTTTCAAAATTTGGTTCTTCAAGTGTTGAGCAGTCTTAAG < 41bp 0.72411067883741 0.403464867308558 0.375475 0.43781295 prediction 0.44822135767482 Functional Loss - SYCP2L ENSG00000153157 CDS Human protein_coding chr6:10961575 chr6:10961579 nonsynonymous SNV 0.868 4 25 hm5C_associated_SNPs_79002 0 0 1 0 2 SYCP2L chr6:10961637 5'GT 10961637 Upstream 59bp
chr16 68909060 68909060 1 + G A HNSC 68909057 + 68909037 68909077 41 ATCTCTCTCCATTGTGCCAGCGGGAGCAGCTGGTGGAAGTG ATCTCTCTCCATTGTGCCAGCGGAAGCAGCTGGTGGAAGTG < 41bp 0.785086193443114 0.560979705692739 0.91364896 0.86881804 prediction 0.44821297550075 Functional Loss - TANGO6 ENSG00000103047 CDS Human protein_coding chr16:68909057 chr16:68909060 nonsynonymous SNV 0.097 2 24 hm5C_associated_SNPs_79003 0 0 1 0 1 TANGO6 chr16:68909057 3'AG 68909057 Downstream 4bp
chr13 46090388 46090388 1 + G T UCEC 46090385 + 46090365 46090405 41 AAGGAAATTTCCCTGGACCTCAAGAAAACTAGAGGTACTTT AAGGAAATTTCCCTGGACCTCAATAAAACTAGAGGTACTTT < 41bp 0.724103084941969 0.344142074422766 0.55053484 0.32712388 prediction 0.448206169883937 Functional Loss - COG3 ENSG00000136152 CDS Human protein_coding chr13:46090385 chr13:46090388 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_79005 0 0 1 0 1 COG3 chr13:46090398 5'GT 46090398 Upstream 11bp
chr15 72106358 72106358 1 + C T UCEC 72106356 + 72106336 72106376 41 GTGCTGCTTCTCCCCAGAGACGCGGGGCCTGAAGGATCCTG GTGCTGCTTCTCCCCAGAGACGTGGGGCCTGAAGGATCCTG < 41bp 0.778452137203863 0.554349636176998 0.35750508 0.60081345 prediction 0.44820500205373 Functional Loss - NR2E3 ENSG00000031544 ncRNA_exonic Human other chr15:72106356 chr15:72106358 . 0.790 3 23 hm5C_associated_SNPs_79006 0 0 0 0 1 NR2E3 chr15:72106353 3'AG 72106353 Downstream 6bp
chr16 67234187 67234187 1 + G A UCEC 67234184 + 67234164 67234204 41 AGGCGCCTTGTTCCGCTGGCCTCGGACATGATCTTTGCCAG AGGCGCCTTGTTCCGCTGGCCTCAGACATGATCTTTGCCAG < 41bp 0.79039208507517 0.566297347877654 0.47353008 0.30946648 prediction 0.448189474395032 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67234184 chr16:67234187 synonymous SNV . 0 24 hm5C_associated_SNPs_79009 0 0 0 0 2 ELMO3 chr16:67234095 3'AG 67234095 Downstream 93bp
chr16 67234187 67234187 1 + G A UCEC 67234184 + 67234164 67234204 41 AGGCGCCTTGTTCCGCTGGCCTCGGACATGATCTTTGCCAG AGGCGCCTTGTTCCGCTGGCCTCAGACATGATCTTTGCCAG < 41bp 0.79039208507517 0.566297347877654 0.47353008 0.30946648 prediction 0.448189474395032 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67234184 chr16:67234187 synonymous SNV . 0 24 hm5C_associated_SNPs_79009 0 0 0 0 2 ELMO3 chr16:67234264 5'GT 67234264 Upstream 78bp
chr2 220044484 220044484 1 + A C OV 220044483 + 220044463 220044503 41 CCAGAGGAGCCACACTCTGACAGGTGAGTACAGGCCACCTC CCAGAGGAGCCACACTCTGACCGGTGAGTACAGGCCACCTC < 41bp 0.838870582982589 0.614784359320599 0.8917733 0.06857574 prediction 0.448172447323979 Functional Loss - RETREG2 ENSG00000144567 CDS Human protein_coding chr2:220044483 chr2:220044484 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_79012 0 0 1 0 2 RETREG2 chr2:220044455 3'AG 220044455 Downstream 30bp
chr2 220044484 220044484 1 + A C OV 220044483 + 220044463 220044503 41 CCAGAGGAGCCACACTCTGACAGGTGAGTACAGGCCACCTC CCAGAGGAGCCACACTCTGACCGGTGAGTACAGGCCACCTC < 41bp 0.838870582982589 0.614784359320599 0.8917733 0.06857574 prediction 0.448172447323979 Functional Loss - RETREG2 ENSG00000144567 CDS Human protein_coding chr2:220044483 chr2:220044484 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_79012 0 0 1 0 2 RETREG2 chr2:220044485 5'GT 220044485 Upstream 2bp
chr4 1806690 1806690 1 + G A COAD 1806687 + 1806667 1806707 41 CGACCCCAAATGGGAGCTGTCTCGGGCCCGGTCAGTGGTGC CGACCCCAAATGGGAGCTGTCTCAGGCCCGGTCAGTGGTGC < 41bp 0.779519835091635 0.555435591701855 0.77263904 0.29477924 prediction 0.44816848677956 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1806687 chr4:1806690 nonsynonymous SNV 0.984 5 24 hm5C_associated_SNPs_79013 0 0 1 0 1 FGFR3 chr4:1806696 5'GT 1806696 Upstream 7bp
chr6 87647469 87647469 1 + G C rs142917355 87647468 + 87647448 87647488 41 GGAGAAAAAGGAGCGGGTTCCGAGTGAGACTTCTGGAGCCA GGAGAAAAAGGAGCGGGTTCCCAGTGAGACTTCTGGAGCCA < 41bp 0.829837900552322 0.60576399488041 0.8488263 0.30788946 prediction 0.448147811343824 Functional Loss - HTR1E ENSG00000168830 UTR5 Human protein_coding chr6:87647468 chr6:87647469 . . 0 22 hm5C_associated_SNPs_79017 0 0 0 0 1 HTR1E chr6:87647541 5'GT 87647541 Upstream 73bp
chr5 1035555 1035555 1 + G A rs76030494 1035552 + 1035532 1035572 41 GGGTGAACTGGCAGAGGAGCCAAGGGTGGCTGACAGGAGGT GGGTGAACTGGCAGAGGAGCCAAAGGTGGCTGACAGGAGGT < 41bp 0.786242553596436 0.56217616647992 0.8858526 0.8333118 prediction 0.448132774233031 Functional Loss - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1035552 chr5:1035555 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_79021 0 0 0 0 2 NKD2 chr5:1035504 3'AG 1035504 Downstream 52bp
chr5 1035555 1035555 1 + G A rs76030494 1035552 + 1035532 1035572 41 GGGTGAACTGGCAGAGGAGCCAAGGGTGGCTGACAGGAGGT GGGTGAACTGGCAGAGGAGCCAAAGGTGGCTGACAGGAGGT < 41bp 0.786242553596436 0.56217616647992 0.8858526 0.8333118 prediction 0.448132774233031 Functional Loss - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1035552 chr5:1035555 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_79021 0 0 0 0 2 NKD2 chr5:1035588 5'GT 1035588 Upstream 34bp
chr19 14266216 14266216 1 + G A UCEC 14266213 + 14266193 14266233 41 AAGACGAAGATGAAGACCCCCTGGAAGGCGTTGAAGGTGGT AAGACGAAGATGAAGACCCCCTGAAAGGCGTTGAAGGTGGT < 41bp 0.734969989037634 0.51090372614944 0.3247378 0.11248362 prediction 0.448132525776388 Functional Loss - ADGRL1 ENSG00000072071 CDS Human protein_coding chr19:14266213 chr19:14266216 synonymous SNV . 0 24 hm5C_associated_SNPs_79023 0 0 1 0 1 ADGRL1 chr19:14266291 5'GT 14266291 Upstream 76bp
chr8 126379036 126379036 1 + C T SKCM 126379034 + 126379014 126379054 41 CCTCAAATTGGCTGTAGCCACACGGATATAAGAAAGTCAGA CCTCAAATTGGCTGTAGCCACATGGATATAAGAAAGTCAGA < 41bp 0.724063626361373 0.45822136441805 0.4148357 0.7500817 prediction 0.448127252722746 Functional Loss - NSMCE2 ENSG00000156831 CDS Human protein_coding chr8:126379034 chr8:126379036 nonsynonymous SNV 0.658 1 23 hm5C_associated_SNPs_79024 0 0 1 0 1 NSMCE2 chr8:126379010 3'AG 126379010 Downstream 27bp
chr5 79375825 79375825 1 + C T UCEC 79375823 + 79375803 79375843 41 GTCAGGCTGCTGTGGAAGGACTCCAGGAATGTGGGCTGGAA GTCAGGCTGCTGTGGAAGGACTTCAGGAATGTGGGCTGGAA < 41bp 0.876344460942659 0.652282029626318 0.94542056 0.34587708 prediction 0.448124862632681 Functional Loss - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79375823 chr5:79375825 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_79026 0 0 0 0 2 THBS4 chr5:79375728 3'AG 79375728 Downstream 98bp
chr5 79375825 79375825 1 + C T UCEC 79375823 + 79375803 79375843 41 GTCAGGCTGCTGTGGAAGGACTCCAGGAATGTGGGCTGGAA GTCAGGCTGCTGTGGAAGGACTTCAGGAATGTGGGCTGGAA < 41bp 0.876344460942659 0.652282029626318 0.94542056 0.34587708 prediction 0.448124862632681 Functional Loss - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79375823 chr5:79375825 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_79026 0 0 0 0 2 THBS4 chr5:79375900 5'GT 79375900 Upstream 76bp
chr3 184769678 184769678 1 + G A rs6810212 184769675 + 184769655 184769695 41 CCTTTGCAGCTGGCTCTCCTCACGGAACTCTCCCAGAATCG CCTTTGCAGCTGGCTCTCCTCACAGAACTCTCCCAGAATCG < 41bp 0.748802301801475 0.524741080699314 0.3968061 0.22149184 prediction 0.448122442204321 Functional Loss - VPS8 ENSG00000156931 CDS Human protein_coding chr3:184769675 chr3:184769678 synonymous SNV . 0 24 hm5C_associated_SNPs_79027 0 0 1 0 1 VPS8 chr3:184769664 3'AG 184769664 Downstream 15bp
chr16 2256583 2256583 1 + G A COAD 2256580 + 2256560 2256600 41 GACGGCGTCAACAAGAACATCGCGTCTGTGGGCTTCCACGA GACGGCGTCAACAAGAACATCGCATCTGTGGGCTTCCACGA < 41bp 0.724056891366355 0.487355181525042 0.1826806 0.27938247 prediction 0.448113782732709 Functional Loss - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2256580 chr16:2256583 synonymous SNV . 0 24 hm5C_associated_SNPs_79032 0 0 1 0 2 MLST8 chr16:2256498 3'AG 2256498 Downstream 86bp
chr16 2256583 2256583 1 + G A COAD 2256580 + 2256560 2256600 41 GACGGCGTCAACAAGAACATCGCGTCTGTGGGCTTCCACGA GACGGCGTCAACAAGAACATCGCATCTGTGGGCTTCCACGA < 41bp 0.724056891366355 0.487355181525042 0.1826806 0.27938247 prediction 0.448113782732709 Functional Loss - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2256580 chr16:2256583 synonymous SNV . 0 24 hm5C_associated_SNPs_79032 0 0 1 0 2 MLST8 chr16:2256660 5'GT 2256660 Upstream 78bp
chr16 845201 845201 1 + G A UCEC 845198 + 845178 845218 41 TGGGTGCTGTGTGTGTGGCCCTCGACTGGCTGGCCTTCGAT TGGGTGCTGTGTGTGTGGCCCTCAACTGGCTGGCCTTCGAT < 41bp 0.794591313297092 0.570534760668906 0.9218004 0.61219215 prediction 0.448113105256372 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845198 chr16:845201 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_79033 0 0 1 0 1 CHTF18 chr16:845132 3'AG 845132 Downstream 70bp
chr1 4832433 4832433 1 + G A STAD 4832430 + 4832410 4832450 41 CAGAACCTCACGGACTTCCCCTCGGCCCGGGTGCCCAGCAG CAGAACCTCACGGACTTCCCCTCAGCCCGGGTGCCCAGCAG < 41bp 0.778383513173286 0.554327330866591 0.2523858 0.19570279 prediction 0.44811236461339 Functional Loss - AJAP1 ENSG00000196581 CDS Human protein_coding chr1:4832430 chr1:4832433 synonymous SNV . 0 24 hm5C_associated_SNPs_79034 0 0 0 0 1 AJAP1 chr1:4832340 3'AG 4832340 Downstream 94bp
chr2 15770167 15770167 1 + G T LUSC 15770165 + 15770145 15770185 41 GTACCATTTCTCAGGTTGAGCCGGATATAAAGGTACCAGTG GTACCATTTCTCAGGTTGAGCCTGATATAAAGGTACCAGTG < 41bp 0.724054521660323 0.38855798245032 0.5874869 0.19050312 prediction 0.448109043320645 Functional Loss - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15770165 chr2:15770167 synonymous SNV . 0 23 hm5C_associated_SNPs_79035 0 0 1 0 2 DDX1 chr2:15770114 3'AG 15770114 Downstream 54bp
chr2 15770167 15770167 1 + G T LUSC 15770165 + 15770145 15770185 41 GTACCATTTCTCAGGTTGAGCCGGATATAAAGGTACCAGTG GTACCATTTCTCAGGTTGAGCCTGATATAAAGGTACCAGTG < 41bp 0.724054521660323 0.38855798245032 0.5874869 0.19050312 prediction 0.448109043320645 Functional Loss - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15770165 chr2:15770167 synonymous SNV . 0 23 hm5C_associated_SNPs_79035 0 0 1 0 2 DDX1 chr2:15770234 5'GT 15770234 Upstream 68bp
chr22 31524557 31524557 1 + C T GBM 31524554 + 31524534 31524574 41 CAGGACGGAAGAGCCACCGACTCCAGGTGACGCAGCACAGC CAGGACGGAAGAGCCACCGACTCTAGGTGACGCAGCACAGC < 41bp 0.764688136922649 0.540640553912212 0.94118065 0.9093986 prediction 0.448095166020875 Functional Loss - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31524554 chr22:31524557 stopgain 1.000 0 24 hm5C_associated_SNPs_79037 0 0 0 0 1 INPP5J chr22:31524640 5'GT 31524640 Upstream 84bp
chr1 1115512 1115512 1 + G A SKCM 1115509 + 1115489 1115529 41 ACGCAGATGGACACTGTGGGCCGGACCTGGAGGGGGCAGAA ACGCAGATGGACACTGTGGGCCGAACCTGGAGGGGGCAGAA < 41bp 0.735806758924945 0.511762443671276 0.4288409 0.3901089 prediction 0.448088630507337 Functional Loss - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1115509 chr1:1115512 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_79042 0 0 0 0 1 TTLL10 chr1:1115414 3'AG 1115414 Downstream 99bp
chr12 7947339 7947339 1 + C T SKCM 7947337 + 7947317 7947357 41 CACCAGGGATGCCTGGTGAACCCGACTGGGAACCTTCCAAT CACCAGGGATGCCTGGTGAACCTGACTGGGAACCTTCCAAT < 41bp 0.831715238555282 0.6076713965765 0.10494146 0.19768721 prediction 0.448087683957563 Functional Loss - NANOG ENSG00000111704 CDS Human protein_coding chr12:7947337 chr12:7947339 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_79043 0 0 0 0 1 NANOG chr12:7947275 3'AG 7947275 Downstream 65bp
chr11 67164800 67164800 1 + C T rs201788835 67164797 + 67164777 67164817 41 CCCAAGAGCCCCGGTCCCCACTCCGAGGAGGAAGATGAGGC CCCAAGAGCCCCGGTCCCCACTCTGAGGAGGAAGATGAGGC < 41bp 0.741168475623744 0.517124686289144 0.3663382 0.16214576 prediction 0.448087578669201 Functional Loss - RAD9A ENSG00000172613 CDS Human protein_coding chr11:67164797 chr11:67164800 synonymous SNV . 0 24 hm5C_associated_SNPs_79044 0 0 1 0 1 RAD9A chr11:67164857 5'GT 67164857 Upstream 58bp
chr2 178299082 178299082 1 + A C BLCA 178299081 + 178299061 178299101 41 TCTTAGTGGCATGGGTTTACCAACATTTAAAGAATGGATCC TCTTAGTGGCATGGGTTTACCCACATTTAAAGAATGGATCC < 41bp 0.776346478289365 0.552310647233049 0.21353963 0.12751737 prediction 0.448071662112633 Functional Loss - AGPS ENSG00000018510 CDS Human protein_coding chr2:178299081 chr2:178299082 synonymous SNV . 0 22 hm5C_associated_SNPs_79046 0 0 1 0 2 AGPS chr2:178299055 3'AG 178299055 Downstream 28bp
chr2 178299082 178299082 1 + A C BLCA 178299081 + 178299061 178299101 41 TCTTAGTGGCATGGGTTTACCAACATTTAAAGAATGGATCC TCTTAGTGGCATGGGTTTACCCACATTTAAAGAATGGATCC < 41bp 0.776346478289365 0.552310647233049 0.21353963 0.12751737 prediction 0.448071662112633 Functional Loss - AGPS ENSG00000018510 CDS Human protein_coding chr2:178299081 chr2:178299082 synonymous SNV . 0 22 hm5C_associated_SNPs_79046 0 0 1 0 2 AGPS chr2:178299145 5'GT 178299145 Upstream 64bp
chr9 131469299 131469299 1 + T C UCEC 131469298 + 131469278 131469318 41 ACAGGACCGCAAGGCACTGGCTGAGGTCAGGCCCCAGCCCT ACAGGACCGCAAGGCACTGGCCGAGGTCAGGCCCCAGCCCT < 41bp 0.771256853812969 0.547224697368734 0.7893082 0.8994504 prediction 0.448064312888469 Functional Loss - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131469298 chr9:131469299 synonymous SNV . 0 22 hm5C_associated_SNPs_79049 0 0 1 0 1 PKN3 chr9:131469302 5'GT 131469302 Upstream 4bp
chr1 100329990 100329990 1 + G A COAD 100329987 + 100329967 100330007 41 ATTGCAGACTCTTGGACTATCTAGGTCATGCTACTCCCTTG ATTGCAGACTCTTGGACTATCTAAGTCATGCTACTCCCTTG < 41bp 0.732633299238806 0.508601499915265 0.3337234 0.08821246 prediction 0.448063598647081 Functional Loss - AGL ENSG00000162688 CDS Human protein_coding chr1:100329987 chr1:100329990 nonsynonymous SNV 0.992 2 24 hm5C_associated_SNPs_79050 0 0 1 0 1 AGL chr1:100329942 3'AG 100329942 Downstream 49bp
chr15 50716633 50716633 1 + G A rs2241769 50716630 + 50716610 50716650 41 CTGGCTTCCGTCCTGGTAGCCAAGGCTAATTCTCCCTCGAG CTGGCTTCCGTCCTGGTAGCCAAAGCTAATTCTCCCTCGAG < 41bp 0.745629030842283 0.521598171448786 0.873211 0.8582673 prediction 0.448061718786994 Functional Loss - USP8 ENSG00000138592 UTR5 Human protein_coding chr15:50716630 chr15:50716633 . . 0 24 hm5C_associated_SNPs_79051 0 0 1 0 1 USP8 chr15:50716711 5'GT 50716711 Upstream 79bp
chr15 80800574 80800574 1 + C T COAD 80800572 + 80800552 80800592 41 CATGAGGATGTGCATGGGCTCGCGGCGGTCTTTCATCTGCA CATGAGGATGTGCATGGGCTCGTGGCGGTCTTTCATCTGCA < 41bp 0.724022260626539 0.444798857549852 0.8679577 0.8476643 prediction 0.448044521253077 Functional Loss - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80800572 chr15:80800574 nonsynonymous SNV 0.242 3 23 hm5C_associated_SNPs_79054 0 0 0 0 2 ARNT2 chr15:80800497 3'AG 80800497 Downstream 78bp
chr15 80800574 80800574 1 + C T COAD 80800572 + 80800552 80800592 41 CATGAGGATGTGCATGGGCTCGCGGCGGTCTTTCATCTGCA CATGAGGATGTGCATGGGCTCGTGGCGGTCTTTCATCTGCA < 41bp 0.724022260626539 0.444798857549852 0.8679577 0.8476643 prediction 0.448044521253077 Functional Loss - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80800572 chr15:80800574 nonsynonymous SNV 0.242 3 23 hm5C_associated_SNPs_79054 0 0 0 0 2 ARNT2 chr15:80800599 5'GT 80800599 Upstream 26bp
chr15 80800575 80800575 1 + G A STAD 80800572 + 80800552 80800592 41 CATGAGGATGTGCATGGGCTCGCGGCGGTCTTTCATCTGCA CATGAGGATGTGCATGGGCTCGCAGCGGTCTTTCATCTGCA < 41bp 0.724022260626539 0.470825147285667 0.8679577 0.38946903 prediction 0.448044521253077 Functional Loss - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80800572 chr15:80800575 nonsynonymous SNV 0.252 3 24 hm5C_associated_SNPs_79055 0 0 0 0 2 ARNT2 chr15:80800497 3'AG 80800497 Downstream 79bp
chr15 80800575 80800575 1 + G A STAD 80800572 + 80800552 80800592 41 CATGAGGATGTGCATGGGCTCGCGGCGGTCTTTCATCTGCA CATGAGGATGTGCATGGGCTCGCAGCGGTCTTTCATCTGCA < 41bp 0.724022260626539 0.470825147285667 0.8679577 0.38946903 prediction 0.448044521253077 Functional Loss - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80800572 chr15:80800575 nonsynonymous SNV 0.252 3 24 hm5C_associated_SNPs_79055 0 0 0 0 2 ARNT2 chr15:80800599 5'GT 80800599 Upstream 25bp
chr19 19613182 19613182 1 + G T UCEC 19613179 + 19613159 19613199 41 GGGGTTCGGCCACGACGCCCCGAGGTGTCCTGCACACGTTC GGGGTTCGGCCACGACGCCCCGATGTGTCCTGCACACGTTC < 41bp 0.724022133838515 0.314774732761865 0.90066695 0.21301532 prediction 0.44804426767703 Functional Loss - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19613179 chr19:19613182 nonsynonymous SNV 0.674 4 24 hm5C_associated_SNPs_79056 0 0 1 0 1 GATAD2A chr19:19613140 3'AG 19613140 Downstream 43bp
chr21 44180974 44180974 1 + G T UCEC 44180972 + 44180952 44180992 41 GGATATCCTGATCCTAATGACAGCGGCCATCTGCCACGATC GGATATCCTGATCCTAATGACATCGGCCATCTGCCACGATC < 41bp 0.724020945417164 0.420834434117114 0.15366435 0.042830706 prediction 0.448041890834328 Functional Loss - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44180972 chr21:44180974 nonsynonymous SNV 0.846 2 23 hm5C_associated_SNPs_79057 0 0 0 0 2 PDE9A chr21:44180935 3'AG 44180935 Downstream 40bp
chr21 44180974 44180974 1 + G T UCEC 44180972 + 44180952 44180992 41 GGATATCCTGATCCTAATGACAGCGGCCATCTGCCACGATC GGATATCCTGATCCTAATGACATCGGCCATCTGCCACGATC < 41bp 0.724020945417164 0.420834434117114 0.15366435 0.042830706 prediction 0.448041890834328 Functional Loss - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44180972 chr21:44180974 nonsynonymous SNV 0.846 2 23 hm5C_associated_SNPs_79057 0 0 0 0 2 PDE9A chr21:44181017 5'GT 44181017 Upstream 44bp
chr20 61458629 61458629 1 + G A LUAD 61458626 + 61458606 61458646 41 AGAGGGGCCCAGAAGGGTTCCGCGGCCCCAAGGGTGACCTC AGAGGGGCCCAGAAGGGTTCCGCAGCCCCAAGGGTGACCTC < 41bp 0.782681083603981 0.558669672590073 0.5852014 0.08594105 prediction 0.448022822027816 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61458626 chr20:61458629 nonsynonymous SNV 0.438 5 24 hm5C_associated_SNPs_79060 0 0 1 0 1 COL9A3 chr20:61458646 5'GT 61458646 Upstream 18bp
chr2 201515748 201515748 1 + G A BLCA 201515745 + 201515725 201515765 41 TTGATCAAACACCCTACAAACAAGAGATCAATGCCAAGAAC TTGATCAAACACCCTACAAACAAAAGATCAATGCCAAGAAC < 41bp 0.753055151964904 0.529051199055912 0.9199003 0.88996017 prediction 0.448007905817985 Functional Loss - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201515745 chr2:201515748 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_79065 0 0 0 0 1 AOX1 chr2:201515697 3'AG 201515697 Downstream 52bp
chr8 19703277 19703277 1 + G T UCEC 19703274 + 19703254 19703294 41 AGGAAGGTGGGAAAATTCATCTGGAATTACTACCCAATCAA AGGAAGGTGGGAAAATTCATCTGTAATTACTACCCAATCAA < 41bp 0.92233403853102 0.698339658265312 0.8761897 0.37052056 prediction 0.447988760531416 Functional Loss - INTS10 ENSG00000104613 CDS Human protein_coding chr8:19703274 chr8:19703277 stopgain 1.000 1 24 hm5C_associated_SNPs_79071 0 0 1 0 2 INTS10 chr8:19703215 3'AG 19703215 Downstream 63bp
chr8 19703277 19703277 1 + G T UCEC 19703274 + 19703254 19703294 41 AGGAAGGTGGGAAAATTCATCTGGAATTACTACCCAATCAA AGGAAGGTGGGAAAATTCATCTGTAATTACTACCCAATCAA < 41bp 0.92233403853102 0.698339658265312 0.8761897 0.37052056 prediction 0.447988760531416 Functional Loss - INTS10 ENSG00000104613 CDS Human protein_coding chr8:19703274 chr8:19703277 stopgain 1.000 1 24 hm5C_associated_SNPs_79071 0 0 1 0 2 INTS10 chr8:19703308 5'GT 19703308 Upstream 32bp
chr6 27215714 27215714 1 + G T UCEC 27215712 + 27215692 27215732 41 TCAGCAGTTTCAGGAGAGCTCTGCCCAGGGCCTGGGCCTGA TCAGCAGTTTCAGGAGAGCTCTTCCCAGGGCCTGGGCCTGA < 41bp 0.723992535160177 0.373203372115947 0.27733457 0.23301187 prediction 0.447985070320355 Functional Loss - PRSS16 ENSG00000112812 CDS Human protein_coding chr6:27215712 chr6:27215714 nonsynonymous SNV 0.045 0 23 hm5C_associated_SNPs_79073 0 0 0 0 1 PRSS16 chr6:27215661 3'AG 27215661 Downstream 54bp
chr12 122460019 122460019 1 + G A LUSC 122460016 + 122459996 122460036 41 CCATGTCGGGCAGGTCGGTTCGAGCCGAGACGAGGAGCCGG CCATGTCGGGCAGGTCGGTTCGAACCGAGACGAGGAGCCGG < 41bp 0.781533074533072 0.557542597550465 0.8957721 0.86543024 prediction 0.447980953965214 Functional Loss - BCL7A ENSG00000110987 CDS Human protein_coding chr12:122460016 chr12:122460019 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_79074 0 0 1 0 1 BCL7A chr12:122460089 5'GT 122460089 Upstream 71bp
chr1 180794316 180794316 1 + G T COAD 180794313 + 180794293 180794333 41 TTTACTAGATTGCTGGATTCCTCGGGATATTGTGGTGCCTG TTTACTAGATTGCTGGATTCCTCTGGATATTGTGGTGCCTG < 41bp 0.723988816298621 0.348568162352957 0.0663169 0.08780837 prediction 0.447977632597243 Functional Loss - XPR1 ENSG00000143324 CDS Human protein_coding chr1:180794313 chr1:180794316 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_79076 0 0 1 0 1 XPR1 chr1:180794301 3'AG 180794301 Downstream 16bp
chr1 180794315 180794315 1 + C T COAD 180794313 + 180794293 180794333 41 TTTACTAGATTGCTGGATTCCTCGGGATATTGTGGTGCCTG TTTACTAGATTGCTGGATTCCTTGGGATATTGTGGTGCCTG < 41bp 0.723988816298621 0.434057252700071 0.0663169 0.11527833 prediction 0.447977632597243 Functional Loss - XPR1 ENSG00000143324 CDS Human protein_coding chr1:180794313 chr1:180794315 synonymous SNV . 0 23 hm5C_associated_SNPs_79077 0 0 1 0 1 XPR1 chr1:180794301 3'AG 180794301 Downstream 15bp
chr1 78546488 78546488 1 + G T HNSC 78546486 + 78546466 78546506 41 AGAAGTGAATGTGTATAAATCTGAGGATTCACTTGGTCTCA AGAAGTGAATGTGTATAAATCTTAGGATTCACTTGGTCTCA < 41bp 0.723988032163592 0.393888554731491 0.53752714 0.0584718 prediction 0.447976064327185 Functional Loss - GIPC2 ENSG00000137960 CDS Human protein_coding chr1:78546486 chr1:78546488 stopgain 0.374 1 23 hm5C_associated_SNPs_79078 0 0 1 0 1 GIPC2 chr1:78546544 5'GT 78546544 Upstream 57bp
chr11 704449 704449 1 + G A rs550345742 704446 + 704426 704466 41 TGTCTGTGGCCCCCAGTGGCCACGGTGAGCTGCAGGACAGC TGTCTGTGGCCCCCAGTGGCCACAGTGAGCTGCAGGACAGC < 41bp 0.780797260733409 0.556812190476608 0.23737973 0.23859596 prediction 0.447970140513601 Functional Loss - TMEM80 ENSG00000177042 CDS Human protein_coding chr11:704446 chr11:704449 unknown . 0 24 hm5C_associated_SNPs_79080 0 0 0 0 1 TMEM80 chr11:704442 3'AG 704442 Downstream 8bp
chr16 4384872 4384872 1 + G A LGG 4384869 + 4384849 4384889 41 GTTCTTCCTGCCCCTCGGCTCCGGGGGGGCCCTGCACCTGC GTTCTTCCTGCCCCTCGGCTCCGAGGGGGCCCTGCACCTGC < 41bp 0.803498207745203 0.579522399598738 0.93811 0.36488384 prediction 0.447951616292931 Functional Loss - GLIS2 ENSG00000126603 CDS Human protein_coding chr16:4384869 chr16:4384872 nonsynonymous SNV 0.265 1 24 hm5C_associated_SNPs_79085 0 0 1 0 1 GLIS2 chr16:4384802 3'AG 4384802 Downstream 71bp
chr15 42602622 42602622 1 + G A PRAD 42602619 + 42602599 42602639 41 GGTATTTTCTGGCTGAATGCCTCGGAAACACTGGTGGAGAT GGTATTTTCTGGCTGAATGCCTCAGAAACACTGGTGGAGAT < 41bp 0.760385675856771 0.536411221217072 0.09840453 0.10888621 prediction 0.447948909279398 Functional Loss - GANC ENSG00000214013 CDS Human protein_coding chr15:42602619 chr15:42602622 synonymous SNV . 0 24 hm5C_associated_SNPs_79086 0 0 1 0 1 GANC chr15:42602661 5'GT 42602661 Upstream 40bp
chr4 74363407 74363407 1 + G T BRCA 74363404 + 74363384 74363424 41 GAGACAACTGAGAAAAGCCTCAAGATGGTACAACAAGAATG GAGACAACTGAGAAAAGCCTCAATATGGTACAACAAGAATG < 41bp 0.723972821621779 0.349597260294225 0.11256772 0.0971432 prediction 0.447945643243559 Functional Loss - AFM ENSG00000079557 CDS Human protein_coding chr4:74363404 chr4:74363407 nonsynonymous SNV 0.152 1 24 hm5C_associated_SNPs_79088 0 0 0 0 2 AFM chr4:74363369 3'AG 74363369 Downstream 39bp
chr4 74363407 74363407 1 + G T BRCA 74363404 + 74363384 74363424 41 GAGACAACTGAGAAAAGCCTCAAGATGGTACAACAAGAATG GAGACAACTGAGAAAAGCCTCAATATGGTACAACAAGAATG < 41bp 0.723972821621779 0.349597260294225 0.11256772 0.0971432 prediction 0.447945643243559 Functional Loss - AFM ENSG00000079557 CDS Human protein_coding chr4:74363404 chr4:74363407 nonsynonymous SNV 0.152 1 24 hm5C_associated_SNPs_79088 0 0 0 0 2 AFM chr4:74363466 5'GT 74363466 Upstream 60bp
chr9 131768820 131768820 1 + G A OV 131768817 + 131768797 131768837 41 GCCTCTCGCGCTACTTCCGCCGGGGAGCCCCCAGCTCCCCT GCCTCTCGCGCTACTTCCGCCGGAGAGCCCCCAGCTCCCCT < 41bp 0.767368305778325 0.543399217848245 0.8941579 0.8655295 prediction 0.447938175860159 Functional Loss - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131768817 chr9:131768820 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_79089 0 0 1 0 1 NUP188 chr9:131768781 3'AG 131768781 Downstream 40bp
chr19 40485867 40485867 1 + A C BLCA 40485866 + 40485846 40485886 41 GAGATTGATGCCATCGCCACCAAGAGATTCGATGCTCAGAC GAGATTGATGCCATCGCCACCCAGAGATTCGATGCTCAGAC < 41bp 0.82035352923507 0.596384508522337 0.5810448 0.42588067 prediction 0.447938041425466 Functional Loss - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40485866 chr19:40485867 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_79090 0 0 1 0 1 PSMC4 chr19:40485891 5'GT 40485891 Upstream 25bp
chr7 104753587 104753587 1 + T C LIHC 104753586 + 104753566 104753606 41 TACCTGTCACAGGTCCTCATCTCCAGCCCCAAGGACCAAAC TACCTGTCACAGGTCCTCATCCCCAGCCCCAAGGACCAAAC < 41bp 0.72396795516195 0.450859206325175 0.91807073 0.11421755 prediction 0.447935910323901 Functional Loss - KMT2E ENSG00000005483 CDS Human protein_coding chr7:104753586 chr7:104753587 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_79093 0 0 1 3 1 KMT2E chr7:104753532 3'AG 104753532 Downstream 56bp
chrX 150889907 150889907 1 + G A UCEC 150889904 + 150889884 150889924 41 GCCCAGAATGCTGAGAGAATCAGGCCATGGGGATGCCCATC GCCCAGAATGCTGAGAGAATCAGACCATGGGGATGCCCATC < 41bp 0.799963387675712 0.575996944941905 0.69696444 0.17428422 prediction 0.447932885467613 Functional Loss - FATE1 ENSG00000147378 CDS Human protein_coding chrX:150889904 chrX:150889907 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_79094 0 0 0 0 2 FATE1 chrX:150889867 3'AG 150889867 Downstream 41bp
chrX 150889907 150889907 1 + G A UCEC 150889904 + 150889884 150889924 41 GCCCAGAATGCTGAGAGAATCAGGCCATGGGGATGCCCATC GCCCAGAATGCTGAGAGAATCAGACCATGGGGATGCCCATC < 41bp 0.799963387675712 0.575996944941905 0.69696444 0.17428422 prediction 0.447932885467613 Functional Loss - FATE1 ENSG00000147378 CDS Human protein_coding chrX:150889904 chrX:150889907 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_79094 0 0 0 0 2 FATE1 chrX:150889973 5'GT 150889973 Upstream 67bp
chr5 74655042 74655042 1 + G T UCEC 74655039 + 74655019 74655059 41 ATGATTGAGGTCAACATTAACAAGAATTTAGTGGGCTCTGC ATGATTGAGGTCAACATTAACAATAATTTAGTGGGCTCTGC < 41bp 0.723962489744831 0.384981255621397 0.6762495 0.28712848 prediction 0.447924979489662 Functional Loss - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74655039 chr5:74655042 nonsynonymous SNV 0.981 4 24 hm5C_associated_SNPs_79097 0 0 1 0 2 HMGCR chr5:74654995 3'AG 74654995 Downstream 48bp
chr5 74655042 74655042 1 + G T UCEC 74655039 + 74655019 74655059 41 ATGATTGAGGTCAACATTAACAAGAATTTAGTGGGCTCTGC ATGATTGAGGTCAACATTAACAATAATTTAGTGGGCTCTGC < 41bp 0.723962489744831 0.384981255621397 0.6762495 0.28712848 prediction 0.447924979489662 Functional Loss - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74655039 chr5:74655042 nonsynonymous SNV 0.981 4 24 hm5C_associated_SNPs_79097 0 0 1 0 2 HMGCR chr5:74655135 5'GT 74655135 Upstream 94bp
chr1 221055680 221055680 1 + C T BRCA 221055678 + 221055658 221055698 41 CTGGCGGCGATGCTGGGCCTCACGGACGCACAGGTAAGGCA CTGGCGGCGATGCTGGGCCTCATGGACGCACAGGTAAGGCA < 41bp 0.723962312519957 0.466411088489695 0.62288964 0.72089636 prediction 0.447924625039913 Functional Loss - HLX ENSG00000136630 CDS Human protein_coding chr1:221055678 chr1:221055680 nonsynonymous SNV 0.668 3 23 hm5C_associated_SNPs_79098 0 0 1 0 1 HLX chr1:221055690 5'GT 221055690 Upstream 11bp
chr1 221055681 221055681 1 + G A UCEC 221055678 + 221055658 221055698 41 CTGGCGGCGATGCTGGGCCTCACGGACGCACAGGTAAGGCA CTGGCGGCGATGCTGGGCCTCACAGACGCACAGGTAAGGCA < 41bp 0.723962312519957 0.475418525910737 0.62288964 0.62205446 prediction 0.447924625039913 Functional Loss - HLX ENSG00000136630 CDS Human protein_coding chr1:221055678 chr1:221055681 synonymous SNV . 0 24 hm5C_associated_SNPs_79099 0 0 1 0 1 HLX chr1:221055690 5'GT 221055690 Upstream 10bp
chr3 45052761 45052761 1 + C T LIHC 45052759 + 45052739 45052779 41 GTGGGCAAGGTACTGCATGCCTCCTTGCAGAGTGTTGTGCA GTGGGCAAGGTACTGCATGCCTTCTTGCAGAGTGTTGTGCA < 41bp 0.723959787710263 0.430490024820329 0.0064133108 0.0043154955 prediction 0.447919575420527 Functional Loss - EXOSC7 ENSG00000075914 CDS Human protein_coding chr3:45052759 chr3:45052761 nonsynonymous SNV 0.457 2 23 hm5C_associated_SNPs_79101 0 0 1 0 1 EXOSC7 chr3:45052727 3'AG 45052727 Downstream 35bp
chr15 50521172 50521172 1 + A C UCEC 50521168 + 50521148 50521188 41 AGGGGAAAATGTGGCCACCACTGAAGTTGCTGATACAGTTG AGGGGAAAATGTGGCCACCACTGACGTTGCTGATACAGTTG < 41bp 0.723948196977553 0.293979754495594 0.3898821 0.31590328 prediction 0.447896393955105 Functional Loss - SLC27A2 ENSG00000140284 CDS Human protein_coding chr15:50521168 chr15:50521172 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_79104 0 0 1 0 2 SLC27A2 chr15:50521142 3'AG 50521142 Downstream 31bp
chr15 50521172 50521172 1 + A C UCEC 50521168 + 50521148 50521188 41 AGGGGAAAATGTGGCCACCACTGAAGTTGCTGATACAGTTG AGGGGAAAATGTGGCCACCACTGACGTTGCTGATACAGTTG < 41bp 0.723948196977553 0.293979754495594 0.3898821 0.31590328 prediction 0.447896393955105 Functional Loss - SLC27A2 ENSG00000140284 CDS Human protein_coding chr15:50521168 chr15:50521172 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_79104 0 0 1 0 2 SLC27A2 chr15:50521239 5'GT 50521239 Upstream 68bp
chr10 6373217 6373217 1 + G A rs77984028 6373214 + 6373194 6373234 41 GGTTGAGAACTATTGTTCAACGCGAACTTCACATATGAAGC GGTTGAGAACTATTGTTCAACGCAAACTTCACATATGAAGC < 41bp 0.751288703973298 0.527341390842771 0.026091963 0.017753959 prediction 0.447894626261054 Functional Loss - LOC399715 ENSG00000215244 ncRNA_exonic Human lincRNA chr10:6373214 chr10:6373217 . . 0 24 hm5C_associated_SNPs_79106 0 0 1 2 2 LOC399715 chr10:6373173 3'AG 6373173 Downstream 45bp
chr10 6373217 6373217 1 + G A rs77984028 6373214 + 6373194 6373234 41 GGTTGAGAACTATTGTTCAACGCGAACTTCACATATGAAGC GGTTGAGAACTATTGTTCAACGCAAACTTCACATATGAAGC < 41bp 0.751288703973298 0.527341390842771 0.026091963 0.017753959 prediction 0.447894626261054 Functional Loss - LOC399715 ENSG00000215244 ncRNA_exonic Human lincRNA chr10:6373214 chr10:6373217 . . 0 24 hm5C_associated_SNPs_79106 0 0 1 2 2 LOC399715 chr10:6373268 5'GT 6373268 Upstream 52bp
chr8 42179460 42179460 1 + C T UCEC 42179458 + 42179438 42179478 41 CAGGAGACTAAGGGAAAAACCTCGAGGTAAGTGGGGTTCTG CAGGAGACTAAGGGAAAAACCTTGAGGTAAGTGGGGTTCTG < 41bp 0.856318396731205 0.632374252521362 0.8124504 0.33747935 prediction 0.447888288419686 Functional Loss - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42179458 chr8:42179460 stopgain 0.008 1 23 hm5C_associated_SNPs_79107 0 0 1 0 2 IKBKB chr8:42179414 3'AG 42179414 Downstream 47bp
chr8 42179460 42179460 1 + C T UCEC 42179458 + 42179438 42179478 41 CAGGAGACTAAGGGAAAAACCTCGAGGTAAGTGGGGTTCTG CAGGAGACTAAGGGAAAAACCTTGAGGTAAGTGGGGTTCTG < 41bp 0.856318396731205 0.632374252521362 0.8124504 0.33747935 prediction 0.447888288419686 Functional Loss - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42179458 chr8:42179460 stopgain 0.008 1 23 hm5C_associated_SNPs_79107 0 0 1 0 2 IKBKB chr8:42179463 5'GT 42179463 Upstream 4bp
chr1 202266662 202266662 1 + A C UCEC 202266658 + 202266638 202266678 41 ACCTGAATTATAACAAGCTGCAGGAGTTCCCTGTGGCCATC ACCTGAATTATAACAAGCTGCAGGCGTTCCCTGTGGCCATC < 41bp 0.723936765908622 0.320345588959537 0.6802858 0.38888258 prediction 0.447873531817244 Functional Loss - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202266658 chr1:202266662 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_79108 0 0 0 1 2 LGR6 chr1:202266636 3'AG 202266636 Downstream 27bp
chr1 202266662 202266662 1 + A C UCEC 202266658 + 202266638 202266678 41 ACCTGAATTATAACAAGCTGCAGGAGTTCCCTGTGGCCATC ACCTGAATTATAACAAGCTGCAGGCGTTCCCTGTGGCCATC < 41bp 0.723936765908622 0.320345588959537 0.6802858 0.38888258 prediction 0.447873531817244 Functional Loss - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202266658 chr1:202266662 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_79108 0 0 0 1 2 LGR6 chr1:202266704 5'GT 202266704 Upstream 43bp
chr9 126777472 126777472 1 + G A COAD 126777469 + 126777449 126777489 41 CTCGGAGATGGTGATGCGCGCTCGGGACTTGGTTTATCACC CTCGGAGATGGTGATGCGCGCTCAGGACTTGGTTTATCACC < 41bp 0.791289550570193 0.567353109458501 0.09163284 0.061181545 prediction 0.447872882223385 Functional Loss - LHX2 ENSG00000106689 CDS Human protein_coding chr9:126777469 chr9:126777472 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_79109 0 0 1 0 2 LHX2 chr9:126777377 3'AG 126777377 Downstream 96bp
chr9 126777472 126777472 1 + G A COAD 126777469 + 126777449 126777489 41 CTCGGAGATGGTGATGCGCGCTCGGGACTTGGTTTATCACC CTCGGAGATGGTGATGCGCGCTCAGGACTTGGTTTATCACC < 41bp 0.791289550570193 0.567353109458501 0.09163284 0.061181545 prediction 0.447872882223385 Functional Loss - LHX2 ENSG00000106689 CDS Human protein_coding chr9:126777469 chr9:126777472 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_79109 0 0 1 0 2 LHX2 chr9:126777401 3'AG 126777401 Downstream 72bp
chr19 13879704 13879704 1 + A C UCEC 13879703 + 13879683 13879723 41 CCAACAAGGTGGGCACCTACCAGCTGGCCATTGTCGCCAAG CCAACAAGGTGGGCACCTACCCGCTGGCCATTGTCGCCAAG < 41bp 0.828598672471163 0.604664411578365 0.3097421 0.123568654 prediction 0.447868521785594 Functional Loss - MRI1 ENSG00000037757 CDS Human protein_coding chr19:13879703 chr19:13879704 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_79110 0 0 1 0 1 MRI1 chr19:13879638 3'AG 13879638 Downstream 67bp
chr6 76344455 76344455 1 + G A LIHC 76344452 + 76344432 76344472 41 GCAAAATACGTCATTATGTTCTGGAACTGTAGTTCATGGTA GCAAAATACGTCATTATGTTCTGAAACTGTAGTTCATGGTA < 41bp 0.73043405583632 0.506500713306461 0.05984491 0.031830817 prediction 0.447866685059717 Functional Loss - SENP6 ENSG00000112701 CDS Human protein_coding chr6:76344452 chr6:76344455 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_79113 0 0 1 0 2 SENP6 chr6:76344423 3'AG 76344423 Downstream 33bp
chr6 76344455 76344455 1 + G A LIHC 76344452 + 76344432 76344472 41 GCAAAATACGTCATTATGTTCTGGAACTGTAGTTCATGGTA GCAAAATACGTCATTATGTTCTGAAACTGTAGTTCATGGTA < 41bp 0.73043405583632 0.506500713306461 0.05984491 0.031830817 prediction 0.447866685059717 Functional Loss - SENP6 ENSG00000112701 CDS Human protein_coding chr6:76344452 chr6:76344455 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_79113 0 0 1 0 2 SENP6 chr6:76344527 5'GT 76344527 Upstream 73bp
chr11 86118684 86118684 1 + G A rs546400801 86118681 + 86118661 86118701 41 CATATCCAAGTTGTCTGAAACACGACAGTGAGATGAAGCCC CATATCCAAGTTGTCTGAAACACAACAGTGAGATGAAGCCC < 41bp 0.723930295780386 0.48946609646978 0.06543568 0.08095157 prediction 0.447860591560772 Functional Loss - CCDC81 ENSG00000149201 CDS Human protein_coding chr11:86118681 chr11:86118684 nonsynonymous SNV 0.966 1 24 hm5C_associated_SNPs_79115 0 0 0 0 2 CCDC81 chr11:86118656 3'AG 86118656 Downstream 29bp
chr11 86118684 86118684 1 + G A rs546400801 86118681 + 86118661 86118701 41 CATATCCAAGTTGTCTGAAACACGACAGTGAGATGAAGCCC CATATCCAAGTTGTCTGAAACACAACAGTGAGATGAAGCCC < 41bp 0.723930295780386 0.48946609646978 0.06543568 0.08095157 prediction 0.447860591560772 Functional Loss - CCDC81 ENSG00000149201 CDS Human protein_coding chr11:86118681 chr11:86118684 nonsynonymous SNV 0.966 1 24 hm5C_associated_SNPs_79115 0 0 0 0 2 CCDC81 chr11:86118743 5'GT 86118743 Upstream 60bp
chr7 152549306 152549306 1 + C T LUAD 152549304 + 152549284 152549324 41 TGGTGGATGCTAGGCTGAGGCTCAGCGAGGAGCTCAGCGGC TGGTGGATGCTAGGCTGAGGCTTAGCGAGGAGCTCAGCGGC < 41bp 0.723929775286759 0.442350000800239 0.8679401 0.88608336 prediction 0.447859550573518 Functional Loss - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152549304 chr7:152549306 synonymous SNV . 0 23 hm5C_associated_SNPs_79116 0 0 1 0 2 ACTR3B chr7:152549211 3'AG 152549211 Downstream 96bp
chr7 152549306 152549306 1 + C T LUAD 152549304 + 152549284 152549324 41 TGGTGGATGCTAGGCTGAGGCTCAGCGAGGAGCTCAGCGGC TGGTGGATGCTAGGCTGAGGCTTAGCGAGGAGCTCAGCGGC < 41bp 0.723929775286759 0.442350000800239 0.8679401 0.88608336 prediction 0.447859550573518 Functional Loss - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152549304 chr7:152549306 synonymous SNV . 0 23 hm5C_associated_SNPs_79116 0 0 1 0 2 ACTR3B chr7:152549336 5'GT 152549336 Upstream 31bp
chr19 57888541 57888541 1 + G A UCEC 57888538 + 57888518 57888558 41 TGAGGAGGCACCTTTAGAGCCAGGTGTTTCTGTAGGAGTGT TGAGGAGGCACCTTTAGAGCCAGATGTTTCTGTAGGAGTGT < 41bp 0.723921448657897 0.47994913941026 0.886806 0.7437496 prediction 0.447842897315795 Functional Loss - ZNF547 ENSG00000152433 CDS Human protein_coding chr19:57888538 chr19:57888541 nonsynonymous SNV 0.108 1 24 hm5C_associated_SNPs_79120 0 0 0 0 1 ZNF547 chr19:57888496 3'AG 57888496 Downstream 46bp
chr2 114398999 114398999 1 + C T COAD 114398997 + 114398977 114399017 41 TCCCTGCCCCTGTATTTCGTCTCGGCTGCTGATGGTACCAA TCCCTGCCCCTGTATTTCGTCTTGGCTGCTGATGGTACCAA < 41bp 0.723921186873343 0.423758095362066 0.041813552 0.037318558 prediction 0.447842373746687 Functional Loss - RABL2A ENSG00000144134 CDS Human protein_coding chr2:114398997 chr2:114398999 nonsynonymous SNV 0.968 5 23 hm5C_associated_SNPs_79121 0 0 0 0 3 RABL2A chr2:114398930 3'AG 114398930 Downstream 70bp
chr2 114398999 114398999 1 + C T COAD 114398997 + 114398977 114399017 41 TCCCTGCCCCTGTATTTCGTCTCGGCTGCTGATGGTACCAA TCCCTGCCCCTGTATTTCGTCTTGGCTGCTGATGGTACCAA < 41bp 0.723921186873343 0.423758095362066 0.041813552 0.037318558 prediction 0.447842373746687 Functional Loss - RABL2A ENSG00000144134 CDS Human protein_coding chr2:114398997 chr2:114398999 nonsynonymous SNV 0.968 5 23 hm5C_associated_SNPs_79121 0 0 0 0 3 RABL2A chr2:114398933 3'AG 114398933 Downstream 67bp
chr2 114398999 114398999 1 + C T COAD 114398997 + 114398977 114399017 41 TCCCTGCCCCTGTATTTCGTCTCGGCTGCTGATGGTACCAA TCCCTGCCCCTGTATTTCGTCTTGGCTGCTGATGGTACCAA < 41bp 0.723921186873343 0.423758095362066 0.041813552 0.037318558 prediction 0.447842373746687 Functional Loss - RABL2A ENSG00000144134 CDS Human protein_coding chr2:114398997 chr2:114398999 nonsynonymous SNV 0.968 5 23 hm5C_associated_SNPs_79121 0 0 0 0 3 RABL2A chr2:114399027 5'GT 114399027 Upstream 29bp
chr2 114399000 114399000 1 + G A UCEC 114398997 + 114398977 114399017 41 TCCCTGCCCCTGTATTTCGTCTCGGCTGCTGATGGTACCAA TCCCTGCCCCTGTATTTCGTCTCAGCTGCTGATGGTACCAA < 41bp 0.723921186873343 0.488079862919015 0.041813552 0.020048022 prediction 0.447842373746687 Functional Loss - RABL2A ENSG00000144134 CDS Human protein_coding chr2:114398997 chr2:114399000 synonymous SNV . 0 24 hm5C_associated_SNPs_79122 0 0 0 0 3 RABL2A chr2:114398930 3'AG 114398930 Downstream 71bp
chr2 114399000 114399000 1 + G A UCEC 114398997 + 114398977 114399017 41 TCCCTGCCCCTGTATTTCGTCTCGGCTGCTGATGGTACCAA TCCCTGCCCCTGTATTTCGTCTCAGCTGCTGATGGTACCAA < 41bp 0.723921186873343 0.488079862919015 0.041813552 0.020048022 prediction 0.447842373746687 Functional Loss - RABL2A ENSG00000144134 CDS Human protein_coding chr2:114398997 chr2:114399000 synonymous SNV . 0 24 hm5C_associated_SNPs_79122 0 0 0 0 3 RABL2A chr2:114398933 3'AG 114398933 Downstream 68bp
chr2 114399000 114399000 1 + G A UCEC 114398997 + 114398977 114399017 41 TCCCTGCCCCTGTATTTCGTCTCGGCTGCTGATGGTACCAA TCCCTGCCCCTGTATTTCGTCTCAGCTGCTGATGGTACCAA < 41bp 0.723921186873343 0.488079862919015 0.041813552 0.020048022 prediction 0.447842373746687 Functional Loss - RABL2A ENSG00000144134 CDS Human protein_coding chr2:114398997 chr2:114399000 synonymous SNV . 0 24 hm5C_associated_SNPs_79122 0 0 0 0 3 RABL2A chr2:114399027 5'GT 114399027 Upstream 28bp
chr11 67378977 67378977 1 + C T UCEC 67378974 + 67378954 67378994 41 TGTGAGACGGTGCTGATGGACTTCGATGCGCTGGTGCAGGC TGTGAGACGGTGCTGATGGACTTTGATGCGCTGGTGCAGGC < 41bp 0.727525564707502 0.503605752081304 0.14508605 0.08285916 prediction 0.447839625252397 Functional Loss - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67378974 chr11:67378977 synonymous SNV . 0 24 hm5C_associated_SNPs_79123 2 0 1 0 1 NDUFV1 chr11:67379040 5'GT 67379040 Upstream 64bp
chr6 153042917 153042917 1 + G T LUSC 153042914 + 153042894 153042934 41 TTCACTGTATCCATGGCAATCGGGCTGGTACTTGGAGGATT TTCACTGTATCCATGGCAATCGGTCTGGTACTTGGAGGATT < 41bp 0.723915785102185 0.336013866565381 0.82133234 0.2372466 prediction 0.44783157020437 Functional Loss - MYCT1 ENSG00000120279 CDS Human protein_coding chr6:153042914 chr6:153042917 synonymous SNV . 0 24 hm5C_associated_SNPs_79124 0 0 0 0 1 MYCT1 chr6:153042877 3'AG 153042877 Downstream 41bp
chr7 158738350 158738350 1 + T C rs182098988 158738349 + 158738329 158738369 41 CCTGGTGCTGGCCAGGGCGTCTGGCTCCATCGACATCCAGC CCTGGTGCTGGCCAGGGCGTCCGGCTCCATCGACATCCAGC < 41bp 0.73206480355875 0.50815390555692 0.15706953 0.44213682 prediction 0.44782179600366 Functional Loss - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158738349 chr7:158738350 synonymous SNV . 0 22 hm5C_associated_SNPs_79128 0 0 0 1 1 WDR60 chr7:158738272 3'AG 158738272 Downstream 79bp
chr1 20417133 20417133 1 + T C READ 20417132 + 20417112 20417152 41 TCTACTGCCTCAAGAGAAACCTACGGAGCTACAACCCACAG TCTACTGCCTCAAGAGAAACCCACGGAGCTACAACCCACAG < 41bp 0.72391045796216 0.478085426963128 0.17053103 0.21925673 prediction 0.44782091592432 Functional Loss - PLA2G5 ENSG00000127472 CDS Human protein_coding chr1:20417132 chr1:20417133 nonsynonymous SNV 0.597 5 22 hm5C_associated_SNPs_79129 0 0 0 0 1 PLA2G5 chr1:20417061 3'AG 20417061 Downstream 73bp
chr6 37138786 37138786 1 + G A UCEC 37138783 + 37138763 37138803 41 ATCAAACACGTGGAGAAGGACCGGATTTCCGACTGGGGAGA ATCAAACACGTGGAGAAGGACCGAATTTCCGACTGGGGAGA < 41bp 0.785225575830393 0.561321123238053 0.36870652 0.13753366 prediction 0.44780890518468 Functional Loss - PIM1 ENSG00000137193 CDS Human protein_coding chr6:37138783 chr6:37138786 synonymous SNV . 0 24 hm5C_associated_SNPs_79132 0 0 1 0 2 PIM1 chr6:37138757 3'AG 37138757 Downstream 30bp
chr6 37138786 37138786 1 + G A UCEC 37138783 + 37138763 37138803 41 ATCAAACACGTGGAGAAGGACCGGATTTCCGACTGGGGAGA ATCAAACACGTGGAGAAGGACCGAATTTCCGACTGGGGAGA < 41bp 0.785225575830393 0.561321123238053 0.36870652 0.13753366 prediction 0.44780890518468 Functional Loss - PIM1 ENSG00000137193 CDS Human protein_coding chr6:37138783 chr6:37138786 synonymous SNV . 0 24 hm5C_associated_SNPs_79132 0 0 1 0 2 PIM1 chr6:37138807 5'GT 37138807 Upstream 22bp
chr1 228675570 228675570 1 + G C rs61827301 228675566 + 228675546 228675586 41 GGAACCGCGCTGGAGGAAGGCGCTGCGCGGCAAGGTGCGCG GGAACCGCGCTGGAGGAAGGCGCTCCGCGGCAAGGTGCGCG < 41bp 0.723901339853437 0.455393597720448 0.57344705 0.53864115 prediction 0.447802679706875 Functional Loss - RNF187 ENSG00000168159 CDS Human protein_coding chr1:228675566 chr1:228675570 synonymous SNV . 0 25 hm5C_associated_SNPs_79135 0 0 1 0 1 RNF187 chr1:228675579 5'GT 228675579 Upstream 10bp
chr1 33219734 33219734 1 + G C rs528325747 33219733 + 33219713 33219753 41 GGAAGGCCCCCAGCGGTCCCCGGGTCCGCAGCTTCTGGCGG GGAAGGCCCCCAGCGGTCCCCCGGTCCGCAGCTTCTGGCGG < 41bp 0.723900654709957 0.410986992603719 0.8859142 0.3603201 prediction 0.447801309419914 Functional Loss - KIAA1522 ENSG00000162522 CDS Human protein_coding chr1:33219733 chr1:33219734 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_79137 0 0 1 0 1 KIAA1522 chr1:33219781 5'GT 33219781 Upstream 48bp
chr1 74808574 74808574 1 + G A UCEC 74808571 + 74808551 74808591 41 TGTCCCACTCCATTTCTGTTCTCGATTTGGACACCATGATA TGTCCCACTCCATTTCTGTTCTCAATTTGGACACCATGATA < 41bp 0.72389935252342 0.496472681923923 0.34653467 0.06958574 prediction 0.44779870504684 Functional Loss - FPGT-TNNI3K;TNNI3K ENSG00000116783;ENSG00000259030 CDS Human other chr1:74808571 chr1:74808574 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_79138 0 0 0 0 2 FPGT-TNNI3K;TNNI3K chr1:74808526 3'AG 74808526 Downstream 49bp
chr1 74808574 74808574 1 + G A UCEC 74808571 + 74808551 74808591 41 TGTCCCACTCCATTTCTGTTCTCGATTTGGACACCATGATA TGTCCCACTCCATTTCTGTTCTCAATTTGGACACCATGATA < 41bp 0.72389935252342 0.496472681923923 0.34653467 0.06958574 prediction 0.44779870504684 Functional Loss - FPGT-TNNI3K;TNNI3K ENSG00000116783;ENSG00000259030 CDS Human other chr1:74808571 chr1:74808574 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_79138 0 0 0 0 2 FPGT-TNNI3K;TNNI3K chr1:74808670 5'GT 74808670 Upstream 97bp
chr1 27676925 27676925 1 + G A rs6702341 27676922 + 27676902 27676942 41 CCGGATAAGCAGAGCAAGCGCAAGACGGCGGTGAAGAAACG CCGGATAAGCAGAGCAAGCGCAAAACGGCGGTGAAGAAACG < 41bp 0.77470507488051 0.550812013736843 0.7331048 0.5882412 prediction 0.447786122287334 Functional Loss - SYTL1 ENSG00000142765 CDS Human protein_coding chr1:27676922 chr1:27676925 synonymous SNV . 0 24 hm5C_associated_SNPs_79141 0 0 1 0 2 SYTL1 chr1:27676880 3'AG 27676880 Downstream 46bp
chr1 27676925 27676925 1 + G A rs6702341 27676922 + 27676902 27676942 41 CCGGATAAGCAGAGCAAGCGCAAGACGGCGGTGAAGAAACG CCGGATAAGCAGAGCAAGCGCAAAACGGCGGTGAAGAAACG < 41bp 0.77470507488051 0.550812013736843 0.7331048 0.5882412 prediction 0.447786122287334 Functional Loss - SYTL1 ENSG00000142765 CDS Human protein_coding chr1:27676922 chr1:27676925 synonymous SNV . 0 24 hm5C_associated_SNPs_79141 0 0 1 0 2 SYTL1 chr1:27676976 5'GT 27676976 Upstream 52bp
chr1 166974600 166974600 1 + G A UCEC 166974597 + 166974577 166974617 41 AGACTTGGATTCGAAGCCTCCTAGATGTGGCCATGTGGGAT AGACTTGGATTCGAAGCCTCCTAAATGTGGCCATGTGGGAT < 41bp 0.723882310966505 0.488858383615438 0.108275115 0.3908774 prediction 0.447764621933009 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166974597 chr1:166974600 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_79144 0 0 0 0 1 MAEL chr1:166974634 5'GT 166974634 Upstream 35bp
chr1 119923773 119923773 1 + G A UCEC 119923770 + 119923750 119923790 41 AGAGCAGCTGTCTAAGTCAACTCGGGATTTTATTGAAGGTG AGAGCAGCTGTCTAAGTCAACTCAGGATTTTATTGAAGGTG < 41bp 0.780293246741363 0.556412286243522 0.27745685 0.14993525 prediction 0.447761920995681 Functional Loss - HAO2 ENSG00000116882 CDS Human protein_coding chr1:119923770 chr1:119923773 nonsynonymous SNV 0.859 2 24 hm5C_associated_SNPs_79146 0 0 0 0 2 HAO2 chr1:119923701 3'AG 119923701 Downstream 73bp
chr1 119923773 119923773 1 + G A UCEC 119923770 + 119923750 119923790 41 AGAGCAGCTGTCTAAGTCAACTCGGGATTTTATTGAAGGTG AGAGCAGCTGTCTAAGTCAACTCAGGATTTTATTGAAGGTG < 41bp 0.780293246741363 0.556412286243522 0.27745685 0.14993525 prediction 0.447761920995681 Functional Loss - HAO2 ENSG00000116882 CDS Human protein_coding chr1:119923770 chr1:119923773 nonsynonymous SNV 0.859 2 24 hm5C_associated_SNPs_79146 0 0 0 0 2 HAO2 chr1:119923839 5'GT 119923839 Upstream 67bp
chr10 98092314 98092314 1 + G T SARC 98092311 + 98092291 98092331 41 GATTTAGTTCTGTGCCCCTACGAGCGTCGTGCCTTTGCCCT GATTTAGTTCTGTGCCCCTACGATCGTCGTGCCTTTGCCCT < 41bp 0.723875000163246 0.325723476440807 0.6053593 0.1272797 prediction 0.447750000326492 Functional Loss - DNTT ENSG00000107447 CDS Human protein_coding chr10:98092311 chr10:98092314 nonsynonymous SNV 0.114 0 24 hm5C_associated_SNPs_79151 0 0 0 0 1 DNTT chr10:98092353 5'GT 98092353 Upstream 40bp
chr1 236918491 236918491 1 + C T UCEC 236918489 + 236918469 236918509 41 GACAACAAGCACACGAACTACACGATGGAGGTACGGCAGCC GACAACAAGCACACGAACTACATGATGGAGGTACGGCAGCC < 41bp 0.854322821654103 0.630447999938405 0.30147624 0.11037743 prediction 0.447749643431397 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236918489 chr1:236918491 nonsynonymous SNV 0.993 3 23 hm5C_associated_SNPs_79152 6 0 0 0 1 ACTN2 chr1:236918498 5'GT 236918498 Upstream 8bp
chr1 9784139 9784139 1 + G A COAD 9784136 + 9784116 9784156 41 ACAGCGACAACATCATGATCCGAGAGAGTGGGCAGGTACAG ACAGCGACAACATCATGATCCGAAAGAGTGGGCAGGTACAG < 41bp 0.778428451372651 0.554555399852038 0.4264477 0.106140494 prediction 0.447746103041227 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9784136 chr1:9784139 nonsynonymous SNV 0.970 1 24 hm5C_associated_SNPs_79156 0 0 0 0 1 PIK3CD chr1:9784150 5'GT 9784150 Upstream 12bp
chr9 2645684 2645684 1 + G A COAD 2645681 + 2645661 2645701 41 AGCTAAGAAACACTGTGGCTCTCGATGCTGACATTGCTGCC AGCTAAGAAACACTGTGGCTCTCAATGCTGACATTGCTGCC < 41bp 0.723868982409589 0.494167040251253 0.80791306 0.48807687 prediction 0.447737964819178 Functional Loss - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2645681 chr9:2645684 nonsynonymous SNV 0.873 5 24 hm5C_associated_SNPs_79157 0 0 0 0 1 VLDLR chr9:2645745 5'GT 2645745 Upstream 62bp
chr6 29895959 29895959 1 - G A rs114214384 29895961 - 29895941 29895981 41 GGTCTCTAGAAGCTCCATGTCCCGAGTCTGGTCCTCTCCAT GGTCTCTAGAAGCTCCATGTCCTGAGTCTGGTCCTCTCCAT < 41bp 0.751913436130817 0.52804749705688 0.23337147 0.23775262 prediction 0.447731878147874 Functional Loss - HCG4B ENSG00000230795 ncRNA_exonic Human unprocessed_pseudogene chr6:29895961 chr6:29895959 . . 0 23 hm5C_associated_SNPs_79159 0 0 0 0 1 HCG4B;HLA-A chr6:29896033 3'AG 29896033 Downstream 75bp
chr11 63176310 63176310 1 + G A SKCM 63176307 + 63176287 63176327 41 TTCCTCCTCCTTCCTGAAACCAGGAACAAGCCTCTGTTTGA TTCCTCCTCCTTCCTGAAACCAGAAACAAGCCTCTGTTTGA < 41bp 0.771993462725438 0.54813035616971 0.89928997 0.8075367 prediction 0.447726213111456 Functional Loss - SLC22A9 ENSG00000149742 CDS Human protein_coding chr11:63176307 chr11:63176310 synonymous SNV . 0 24 hm5C_associated_SNPs_79160 0 0 0 0 1 SLC22A9 chr11:63176351 5'GT 63176351 Upstream 42bp
chrX 47269761 47269761 1 + G T UCEC 47269758 + 47269738 47269778 41 CCTGCTCAGAGGACCATGCACAAGGATGTGATGCTGGAGAC CCTGCTCAGAGGACCATGCACAATGATGTGATGCTGGAGAC < 41bp 0.934013992809391 0.710153001920562 0.51896673 0.051047742 prediction 0.447721981777657 Functional Loss - ZNF157 ENSG00000147117 CDS Human protein_coding chrX:47269758 chrX:47269761 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_79161 0 0 0 0 2 ZNF157 chrX:47269675 3'AG 47269675 Downstream 87bp
chrX 47269761 47269761 1 + G T UCEC 47269758 + 47269738 47269778 41 CCTGCTCAGAGGACCATGCACAAGGATGTGATGCTGGAGAC CCTGCTCAGAGGACCATGCACAATGATGTGATGCTGGAGAC < 41bp 0.934013992809391 0.710153001920562 0.51896673 0.051047742 prediction 0.447721981777657 Functional Loss - ZNF157 ENSG00000147117 CDS Human protein_coding chrX:47269758 chrX:47269761 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_79161 0 0 0 0 2 ZNF157 chrX:47269801 5'GT 47269801 Upstream 41bp
chr17 4859418 4859418 1 + G A rs527864393 4859415 + 4859395 4859435 41 CTGAAGGTCAACCAGATCGGCTCGGTGACCGAATCGATCCA CTGAAGGTCAACCAGATCGGCTCAGTGACCGAATCGATCCA < 41bp 0.723860181361542 0.480646177932392 0.13703388 0.088754416 prediction 0.447720362723083 Functional Loss - ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859415 chr17:4859418 synonymous SNV . 0 24 hm5C_associated_SNPs_79163 1 0 1 0 2 ENO3 chr17:4859362 3'AG 4859362 Downstream 57bp
chr17 4859418 4859418 1 + G A rs527864393 4859415 + 4859395 4859435 41 CTGAAGGTCAACCAGATCGGCTCGGTGACCGAATCGATCCA CTGAAGGTCAACCAGATCGGCTCAGTGACCGAATCGATCCA < 41bp 0.723860181361542 0.480646177932392 0.13703388 0.088754416 prediction 0.447720362723083 Functional Loss - ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859415 chr17:4859418 synonymous SNV . 0 24 hm5C_associated_SNPs_79163 1 0 1 0 2 ENO3 chr17:4859438 5'GT 4859438 Upstream 21bp
chr3 38406773 38406773 1 + G T rs704943 38406771 + 38406751 38406791 41 ACCTCCGGCTACACCAGCAGCTGCAGGTAACTGTGGCTACG ACCTCCGGCTACACCAGCAGCTTCAGGTAACTGTGGCTACG < 41bp 0.723856219881356 0.377000591781597 0.40736616 0.054222256 prediction 0.447712439762711 Functional Loss - XYLB ENSG00000093217 CDS Human protein_coding chr3:38406771 chr3:38406773 synonymous SNV . 0 23 hm5C_associated_SNPs_79165 0 0 1 0 2 XYLB chr3:38406690 3'AG 38406690 Downstream 84bp
chr3 38406773 38406773 1 + G T rs704943 38406771 + 38406751 38406791 41 ACCTCCGGCTACACCAGCAGCTGCAGGTAACTGTGGCTACG ACCTCCGGCTACACCAGCAGCTTCAGGTAACTGTGGCTACG < 41bp 0.723856219881356 0.377000591781597 0.40736616 0.054222256 prediction 0.447712439762711 Functional Loss - XYLB ENSG00000093217 CDS Human protein_coding chr3:38406771 chr3:38406773 synonymous SNV . 0 23 hm5C_associated_SNPs_79165 0 0 1 0 2 XYLB chr3:38406776 5'GT 38406776 Upstream 4bp
chr17 41367905 41367905 1 + G A rs554375910 41367902 + 41367882 41367922 41 GTCCGTCATTGTGCAGCCTGCAGGCCTCAACTCCTCCACAG GTCCGTCATTGTGCAGCCTGCAGACCTCAACTCCTCCACAG < 41bp 0.808085559986134 0.584232544796891 0.43119946 0.19557041 prediction 0.447706030378486 Functional Loss - TMEM106A ENSG00000184988 CDS Human protein_coding chr17:41367902 chr17:41367905 nonsynonymous SNV 0.897 3 24 hm5C_associated_SNPs_79167 0 0 1 0 2 TMEM106A chr17:41367807 3'AG 41367807 Downstream 99bp
chr17 41367905 41367905 1 + G A rs554375910 41367902 + 41367882 41367922 41 GTCCGTCATTGTGCAGCCTGCAGGCCTCAACTCCTCCACAG GTCCGTCATTGTGCAGCCTGCAGACCTCAACTCCTCCACAG < 41bp 0.808085559986134 0.584232544796891 0.43119946 0.19557041 prediction 0.447706030378486 Functional Loss - TMEM106A ENSG00000184988 CDS Human protein_coding chr17:41367902 chr17:41367905 nonsynonymous SNV 0.897 3 24 hm5C_associated_SNPs_79167 0 0 1 0 2 TMEM106A chr17:41367960 5'GT 41367960 Upstream 56bp
chr2 37041367 37041367 1 + G A SKCM 37041364 + 37041344 37041384 41 TAGGCGTTGCCTGGGCTGCCCAAGAGGAGCTAGAAGTCATT TAGGCGTTGCCTGGGCTGCCCAAAAGGAGCTAGAAGTCATT < 41bp 0.761547303453773 0.537698934588659 0.76523525 0.41292292 prediction 0.447696737730227 Functional Loss - VIT ENSG00000205221 CDS Human protein_coding chr2:37041364 chr2:37041367 nonsynonymous SNV 0.965 2 24 hm5C_associated_SNPs_79171 0 0 0 0 1 VIT chr2:37041326 3'AG 37041326 Downstream 42bp
chr2 27320391 27320391 1 + G T KIRC 27320389 + 27320369 27320409 41 AGGGCCGGAACGCATCGGAGCAGGTGAAGATGCTGCAGCGG AGGGCCGGAACGCATCGGAGCATGTGAAGATGCTGCAGCGG < 41bp 0.723848090845486 0.354762899719465 0.93505853 0.3221815 prediction 0.447696181690973 Functional Loss - KHK ENSG00000138030 CDS Human protein_coding chr2:27320389 chr2:27320391 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_79172 0 0 1 0 1 KHK chr2:27320371 3'AG 27320371 Downstream 21bp
chr7 43548591 43548591 1 + G A COAD 43548588 + 43548568 43548608 41 CCTGGACTACAGTGGCCCCTCGCGGGAGTTCTTCTTCCTTC CCTGGACTACAGTGGCCCCTCGCAGGAGTTCTTCTTCCTTC < 41bp 0.723845141464786 0.493590469771738 0.874987 0.29292077 prediction 0.447690282929573 Functional Loss - HECW1 ENSG00000002746 CDS Human protein_coding chr7:43548588 chr7:43548591 nonsynonymous SNV 0.339 4 24 hm5C_associated_SNPs_79174 0 0 0 0 1 HECW1 chr7:43548568 3'AG 43548568 Downstream 24bp
chr7 43548590 43548590 1 + C T LUAD 43548588 + 43548568 43548608 41 CCTGGACTACAGTGGCCCCTCGCGGGAGTTCTTCTTCCTTC CCTGGACTACAGTGGCCCCTCGTGGGAGTTCTTCTTCCTTC < 41bp 0.723845141464786 0.457801408001121 0.874987 0.8765675 prediction 0.447690282929573 Functional Loss - HECW1 ENSG00000002746 CDS Human protein_coding chr7:43548588 chr7:43548590 nonsynonymous SNV 0.338 4 23 hm5C_associated_SNPs_79175 0 0 0 0 1 HECW1 chr7:43548568 3'AG 43548568 Downstream 23bp
chr11 66190200 66190200 1 + A C LUAD 66190199 + 66190179 66190219 41 GTCCCTCAGGCGCCAGAGTGCAGGCAACAAACTCGTGCTTA GTCCCTCAGGCGCCAGAGTGCCGGCAACAAACTCGTGCTTA < 41bp 0.723843074689726 0.453051116244386 0.89783156 0.9262836 prediction 0.447686149379453 Functional Loss - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66190199 chr11:66190200 synonymous SNV . 0 22 hm5C_associated_SNPs_79176 0 0 0 0 1 NPAS4 chr11:66190145 3'AG 66190145 Downstream 56bp
chr6 88138454 88138454 1 + C T rs34588434 88138452 + 88138432 88138472 41 TTCAGCCATTCTTGGGTGCTCACGAACTATACTTTCCTGAG TTCAGCCATTCTTGGGTGCTCATGAACTATACTTTCCTGAG < 41bp 0.854036153016703 0.630199478093354 0.36662564 0.26032245 prediction 0.447673349846699 Functional Loss - CFAP206 ENSG00000213204;ENSG00000272514 CDS Human other chr6:88138452 chr6:88138454 synonymous SNV . 0 23 hm5C_associated_SNPs_79179 0 0 1 0 1 CFAP206 chr6:88138542 5'GT 88138542 Upstream 89bp
chr16 3452365 3452365 1 + G A CESC 3452362 + 3452342 3452382 41 GCAGCAAGGAGATTGTGACCCTCGTGGAAGATTTTCACAGA GCAGCAAGGAGATTGTGACCCTCATGGAAGATTTTCACAGA < 41bp 0.768105429585824 0.54426914153115 0.119945675 0.14254785 prediction 0.447672576109347 Functional Loss - ZNF174 ENSG00000103343 CDS Human protein_coding chr16:3452362 chr16:3452365 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_79180 0 0 1 0 1 ZNF174 chr16:3452406 5'GT 3452406 Upstream 42bp
chr16 55798612 55798612 1 + G T rs76553287 55798609 + 55798589 55798629 41 GATTTCTTCTCCATATCCAGCAGGGCATCTGTCCTCGCCAC GATTTCTTCTCCATATCCAGCAGTGCATCTGTCCTCGCCAC < 41bp 0.72383589973145 0.35557794537714 0.9236747 0.12278402 prediction 0.4476717994629 Functional Loss - CES1P1 ENSG00000228695 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:55798609 chr16:55798612 . . 0 24 hm5C_associated_SNPs_79181 0 0 0 0 1 CES1P1 chr16:55798609 3'AG 55798609 Downstream 4bp
chr9 137778350 137778350 1 + G C LUAD 137778346 + 137778326 137778366 41 TTTGCTAAGTACAGATCATTCAAGGTGGCCGACGAGGCGGA TTTGCTAAGTACAGATCATTCAAGCTGGCCGACGAGGCGGA < 41bp 0.858351130286402 0.634516606269881 0.8975637 0.3866663 prediction 0.44766904803304 Functional Loss - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137778346 chr9:137778350 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_79182 0 0 0 0 2 FCN2 chr9:137778276 3'AG 137778276 Downstream 75bp
chr9 137778350 137778350 1 + G C LUAD 137778346 + 137778326 137778366 41 TTTGCTAAGTACAGATCATTCAAGGTGGCCGACGAGGCGGA TTTGCTAAGTACAGATCATTCAAGCTGGCCGACGAGGCGGA < 41bp 0.858351130286402 0.634516606269881 0.8975637 0.3866663 prediction 0.44766904803304 Functional Loss - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137778346 chr9:137778350 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_79182 0 0 0 0 2 FCN2 chr9:137778410 5'GT 137778410 Upstream 61bp
chr10 124810615 124810615 1 + A C UCEC 124810611 + 124810591 124810631 41 GGCCACCCAGCTGGAAGCTGCAAGATTACTAACATACAATG GGCCACCCAGCTGGAAGCTGCAAGCTTACTAACATACAATG < 41bp 0.723834498182459 0.316626392931627 0.22048947 0.133892 prediction 0.447668996364919 Functional Loss - ACADSB ENSG00000196177 CDS Human protein_coding chr10:124810611 chr10:124810615 nonsynonymous SNV 0.891 3 25 hm5C_associated_SNPs_79183 0 0 1 0 2 ACADSB chr10:124810565 3'AG 124810565 Downstream 51bp
chr10 124810615 124810615 1 + A C UCEC 124810611 + 124810591 124810631 41 GGCCACCCAGCTGGAAGCTGCAAGATTACTAACATACAATG GGCCACCCAGCTGGAAGCTGCAAGCTTACTAACATACAATG < 41bp 0.723834498182459 0.316626392931627 0.22048947 0.133892 prediction 0.447668996364919 Functional Loss - ACADSB ENSG00000196177 CDS Human protein_coding chr10:124810611 chr10:124810615 nonsynonymous SNV 0.891 3 25 hm5C_associated_SNPs_79183 0 0 1 0 2 ACADSB chr10:124810702 5'GT 124810702 Upstream 88bp
chr17 56274326 56274326 1 + G A SKCM 56274323 + 56274303 56274343 41 CCACCCAATGACCCCCGCATCAAGAACCAGCGTGACTGCAT CCACCCAATGACCCCCGCATCAAAAACCAGCGTGACTGCAT < 41bp 0.779865400145274 0.556031431245399 0.19910443 0.10980582 prediction 0.447667937799748 Functional Loss - EPX ENSG00000121053 CDS Human protein_coding chr17:56274323 chr17:56274326 synonymous SNV . 0 24 hm5C_associated_SNPs_79184 0 0 0 0 1 EPX chr17:56274300 3'AG 56274300 Downstream 27bp
chr1 173454641 173454641 1 + C T COAD 173454639 + 173454619 173454659 41 AAAGGGCATGCCTGTGACAGCTCGTGTGGTAGGTCATACAA AAAGGGCATGCCTGTGACAGCTTGTGTGGTAGGTCATACAA < 41bp 0.837978019020094 0.614146747867031 0.18133408 0.09707224 prediction 0.447662542306125 Functional Loss - PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173454639 chr1:173454641 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_79186 0 0 1 0 1 PRDX6 chr1:173454646 5'GT 173454646 Upstream 6bp
chrX 135229135 135229135 1 + G C rs376505580 135229131 + 135229111 135229151 41 GAAGTCGGAGGCCGAAACGGCGTGGGCCCCGAAGCGGGGCC GAAGTCGGAGGCCGAAACGGCGTGCGCCCCGAAGCGGGGCC < 41bp 0.846844687484648 0.623014016398161 0.3789527 0.12624097 prediction 0.447661342172975 Functional Loss - FHL1 ENSG00000022267 upstream Human protein_coding chrX:135229131 chrX:135229135 . . 0 25 hm5C_associated_SNPs_79188 0 0 0 0 1 FHL1 chrX:135229171 5'GT 135229171 Upstream 37bp
chr19 57743955 57743955 1 + C T SKCM 57743953 + 57743933 57743973 41 ATAACTATTTCCATGATGCACGCCGGGTGTACCTGATTCTG ATAACTATTTCCATGATGCACGTCGGGTGTACCTGATTCTG < 41bp 0.723830442908222 0.447369766560764 0.018993378 0.018432528 prediction 0.447660885816445 Functional Loss - AURKC ENSG00000105146 CDS Human protein_coding chr19:57743953 chr19:57743955 synonymous SNV . 0 23 hm5C_associated_SNPs_79190 0 0 1 0 2 AURKC chr19:57743910 3'AG 57743910 Downstream 46bp
chr19 57743955 57743955 1 + C T SKCM 57743953 + 57743933 57743973 41 ATAACTATTTCCATGATGCACGCCGGGTGTACCTGATTCTG ATAACTATTTCCATGATGCACGTCGGGTGTACCTGATTCTG < 41bp 0.723830442908222 0.447369766560764 0.018993378 0.018432528 prediction 0.447660885816445 Functional Loss - AURKC ENSG00000105146 CDS Human protein_coding chr19:57743953 chr19:57743955 synonymous SNV . 0 23 hm5C_associated_SNPs_79190 0 0 1 0 2 AURKC chr19:57744048 5'GT 57744048 Upstream 94bp
chr11 3423861 3423861 1 + C T SKCM 3423859 + 3423839 3423879 41 TCAGAACCTGAGGACCCAGACACGGAGCGGTCGGCCTTCAT TCAGAACCTGAGGACCCAGACATGGAGCGGTCGGCCTTCAT < 41bp 0.723828053579578 0.477726832118224 0.42466438 0.4863981 prediction 0.447656107159156 Functional Loss - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3423859 chr11:3423861 . . 0 23 hm5C_associated_SNPs_79192 0 0 0 0 2 TSSC2 chr11:3423843 3'AG 3423843 Downstream 19bp
chr11 3423861 3423861 1 + C T SKCM 3423859 + 3423839 3423879 41 TCAGAACCTGAGGACCCAGACACGGAGCGGTCGGCCTTCAT TCAGAACCTGAGGACCCAGACATGGAGCGGTCGGCCTTCAT < 41bp 0.723828053579578 0.477726832118224 0.42466438 0.4863981 prediction 0.447656107159156 Functional Loss - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3423859 chr11:3423861 . . 0 23 hm5C_associated_SNPs_79192 0 0 0 0 2 TSSC2 chr11:3423959 5'GT 3423959 Upstream 99bp
chr9 90322224 90322224 1 + C T UCEC 90322222 + 90322202 90322242 41 AATGGCCAGGAGGCCTATGCCTCGAGCTGCAACAGCGGCAC AATGGCCAGGAGGCCTATGCCTTGAGCTGCAACAGCGGCAC < 41bp 0.8547587166216 0.630934426587251 0.43591627 0.18049106 prediction 0.447648580068699 Functional Loss - DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90322222 chr9:90322224 nonsynonymous SNV 0.934 1 23 hm5C_associated_SNPs_79194 0 0 1 0 1 DAPK1 chr9:90322275 5'GT 90322275 Upstream 52bp
chr5 135207157 135207157 1 + C T COAD 135207155 + 135207135 135207175 41 CCCCTGTCTTTGCAGCCAACCTCGGTTTGAAGTCCAGGGCA CCCCTGTCTTTGCAGCCAACCTTGGTTTGAAGTCCAGGGCA < 41bp 0.799726289903814 0.57590219956769 0.53435826 0.10402903 prediction 0.447648180672248 Functional Loss - SLC25A48 ENSG00000145832 CDS Human protein_coding chr5:135207155 chr5:135207157 synonymous SNV . 0 23 hm5C_associated_SNPs_79195 0 0 0 0 1 SLC25A48 chr5:135207150 3'AG 135207150 Downstream 8bp
chr3 46621504 46621504 1 + G A LUSC 46621501 + 46621481 46621521 41 AAGTGTTCCCTGTGTAAATGCTGGCACGGTCAGCTCCGCTG AAGTGTTCCCTGTGTAAATGCTGACACGGTCAGCTCCGCTG < 41bp 0.795541358270766 0.571717808446692 0.23852903 0.2160312 prediction 0.447647099648147 Functional Loss - TDGF1 ENSG00000241186 CDS Human protein_coding chr3:46621501 chr3:46621504 stopgain 0.842 0 24 hm5C_associated_SNPs_79196 0 0 0 0 2 TDGF1 chr3:46621441 3'AG 46621441 Downstream 64bp
chr3 46621504 46621504 1 + G A LUSC 46621501 + 46621481 46621521 41 AAGTGTTCCCTGTGTAAATGCTGGCACGGTCAGCTCCGCTG AAGTGTTCCCTGTGTAAATGCTGACACGGTCAGCTCCGCTG < 41bp 0.795541358270766 0.571717808446692 0.23852903 0.2160312 prediction 0.447647099648147 Functional Loss - TDGF1 ENSG00000241186 CDS Human protein_coding chr3:46621501 chr3:46621504 stopgain 0.842 0 24 hm5C_associated_SNPs_79196 0 0 0 0 2 TDGF1 chr3:46621550 5'GT 46621550 Upstream 47bp
chr11 22291893 22291893 1 + G A SKCM 22291890 + 22291870 22291910 41 TTGGTGGAGACGCCGAAAAGCTCGGACAAACTCTGAGAAGC TTGGTGGAGACGCCGAAAAGCTCAGACAAACTCTGAGAAGC < 41bp 0.741976709856682 0.518155749036966 0.03521797 0.042562604 prediction 0.447641921639433 Functional Loss - ANO5 ENSG00000171714 CDS Human protein_coding chr11:22291890 chr11:22291893 nonsynonymous SNV 0.837 2 24 hm5C_associated_SNPs_79198 1 0 0 0 2 ANO5 chr11:22291858 3'AG 22291858 Downstream 36bp
chr11 22291893 22291893 1 + G A SKCM 22291890 + 22291870 22291910 41 TTGGTGGAGACGCCGAAAAGCTCGGACAAACTCTGAGAAGC TTGGTGGAGACGCCGAAAAGCTCAGACAAACTCTGAGAAGC < 41bp 0.741976709856682 0.518155749036966 0.03521797 0.042562604 prediction 0.447641921639433 Functional Loss - ANO5 ENSG00000171714 CDS Human protein_coding chr11:22291890 chr11:22291893 nonsynonymous SNV 0.837 2 24 hm5C_associated_SNPs_79198 1 0 0 0 2 ANO5 chr11:22291988 5'GT 22291988 Upstream 96bp
chr17 38243103 38243103 1 + C T rs2230702 38243100 + 38243080 38243120 41 GCCAAAAAACTGCCCATGTTCTCCGAGGTGAGTGGCAGAAG GCCAAAAAACTGCCCATGTTCTCTGAGGTGAGTGGCAGAAG < 41bp 0.752858083683164 0.529037569158197 0.14695966 0.14964989 prediction 0.447641029049934 Functional Loss - THRA ENSG00000126351 CDS Human protein_coding chr17:38243100 chr17:38243103 synonymous SNV . 0 24 hm5C_associated_SNPs_79199 0 0 1 0 1 THRA chr17:38243106 5'GT 38243106 Upstream 4bp
chr3 113002418 113002418 1 + C T OV 113002415 + 113002395 113002435 41 ATTGTCGGGGTCGTCCTGGGCTCCATCGTTCTCATCATCGT ATTGTCGGGGTCGTCCTGGGCTCTATCGTTCTCATCATCGT < 41bp 0.733379178889359 0.509559238711282 0.22147521 0.14061984 prediction 0.447639880356156 Functional Loss - BOC ENSG00000144857 CDS Human protein_coding chr3:113002415 chr3:113002418 synonymous SNV . 0 24 hm5C_associated_SNPs_79200 0 0 0 0 1 BOC chr3:113002479 5'GT 113002479 Upstream 62bp
chr7 7613768 7613768 1 + C T SKCM 7613765 + 7613745 7613785 41 AGAAGATATGGATCAGAAATCTCCAGGCAACAAAGGATCAT AGAAGATATGGATCAGAAATCTCTAGGCAACAAAGGATCAT < 41bp 0.73632221522704 0.512503897082101 0.66946495 0.21711272 prediction 0.447636636289879 Functional Loss - MIOS ENSG00000164654 CDS Human protein_coding chr7:7613765 chr7:7613768 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_79203 0 0 1 0 1 MIOS chr7:7613827 5'GT 7613827 Upstream 60bp
chr1 47606461 47606461 1 + G A SKCM 47606458 + 47606438 47606478 41 ACCCTCGTTGACAGTTCCAACACGACCAGGAGCTACAACGG ACCCTCGTTGACAGTTCCAACACAACCAGGAGCTACAACGG < 41bp 0.764698409606073 0.540888239372287 0.17891538 0.04005143 prediction 0.447620340467572 Functional Loss - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47606458 chr1:47606461 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_79205 0 0 0 0 1 CYP4A22 chr1:47606452 3'AG 47606452 Downstream 10bp
chr20 36978024 36978024 1 + G A rs61735371 36978021 + 36978001 36978041 41 CTGCCTGACTTCACCGGGGACTTGAGGATCCCCCACGTCGG CTGCCTGACTTCACCGGGGACTTAAGGATCCCCCACGTCGG < 41bp 0.723808012116843 0.472891140746507 0.24339741 0.16665316 prediction 0.447616024233686 Functional Loss - LBP ENSG00000129988 CDS Human protein_coding chr20:36978021 chr20:36978024 synonymous SNV . 0 24 hm5C_associated_SNPs_79206 0 0 0 0 2 LBP chr20:36977951 3'AG 36977951 Downstream 74bp
chr20 36978024 36978024 1 + G A rs61735371 36978021 + 36978001 36978041 41 CTGCCTGACTTCACCGGGGACTTGAGGATCCCCCACGTCGG CTGCCTGACTTCACCGGGGACTTAAGGATCCCCCACGTCGG < 41bp 0.723808012116843 0.472891140746507 0.24339741 0.16665316 prediction 0.447616024233686 Functional Loss - LBP ENSG00000129988 CDS Human protein_coding chr20:36978021 chr20:36978024 synonymous SNV . 0 24 hm5C_associated_SNPs_79206 0 0 0 0 2 LBP chr20:36978065 5'GT 36978065 Upstream 42bp
chrX 65390556 65390556 1 + G A COAD 65390553 + 65390533 65390573 41 CCCAAGGGAAGAAATGTCATCACGAACCAGCCTCTGGACAG CCCAAGGGAAGAAATGTCATCACAAACCAGCCTCTGGACAG < 41bp 0.756297928849507 0.532492550156341 0.047946185 0.042794198 prediction 0.447610757386333 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65390553 chrX:65390556 synonymous SNV . 0 24 hm5C_associated_SNPs_79208 0 0 0 0 1 HEPH chrX:65390579 5'GT 65390579 Upstream 24bp
chr13 33591343 33591343 1 + C T SKCM 33591341 + 33591321 33591361 41 ACGCCACCGGGCGCCTGGCCCCCGGCATCCGGGGCAGCCCG ACGCCACCGGGCGCCTGGCCCCTGGCATCCGGGGCAGCCCG < 41bp 0.75619207564049 0.532387074987033 0.1837273 0.24256334 prediction 0.447610001306914 Functional Loss - KL ENSG00000133116 CDS Human protein_coding chr13:33591341 chr13:33591343 synonymous SNV . 0 23 hm5C_associated_SNPs_79209 0 0 0 0 1 KL chr13:33591397 5'GT 33591397 Upstream 55bp
chr19 17650550 17650550 1 + G A rs78631497 17650547 + 17650527 17650567 41 TGGACCAGCTGCTGCGGCAGCGGGCGCGTGTGGCGGGGCGG TGGACCAGCTGCTGCGGCAGCGGACGCGTGTGGCGGGGCGG < 41bp 0.792224053754326 0.568419468364687 0.9064733 0.86667264 prediction 0.447609170779278 Functional Loss - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17650547 chr19:17650550 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_79210 0 0 0 0 1 FAM129C chr19:17650574 5'GT 17650574 Upstream 25bp
chr20 49411689 49411689 1 + G T rs117388674 49411686 + 49411666 49411706 41 GCGCGCGAGCTCGCGCTCTTCCTGACCCCCGAGCCTGGGGC GCGCGCGAGCTCGCGCTCTTCCTTACCCCCGAGCCTGGGGC < 41bp 0.723803995472394 0.335190848873086 0.44738445 0.25135887 prediction 0.447607990944789 Functional Loss - BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49411686 chr20:49411689 synonymous SNV . 0 24 hm5C_associated_SNPs_79211 0 0 0 0 1 BCAS4 chr20:49411710 5'GT 49411710 Upstream 22bp
chr3 124458996 124458996 1 + G T BLCA 124458994 + 124458974 124459014 41 TCGGGGGTGCCTCCTTATTGCGGAAATGAGCTCCACCGGCT TCGGGGGTGCCTCCTTATTGCGTAAATGAGCTCCACCGGCT < 41bp 0.897793910238762 0.673998804875792 0.90172136 0.14838576 prediction 0.447590210725941 Functional Loss - UMPS ENSG00000114491 CDS Human protein_coding chr3:124458994 chr3:124458996 stopgain 0.989 1 23 hm5C_associated_SNPs_79212 0 0 1 0 1 UMPS chr3:124459046 5'GT 124459046 Upstream 51bp
chr10 3189824 3189824 1 - C A SKCM 3189827 - 3189807 3189847 41 GGGCACCTGTACGCATCCATCAGGGCAGGCCGGACCCTCAC GGGCACCTGTACGCATCCATCAGTGCAGGCCGGACCCTCAC < 41bp 0.932936395889246 0.709143466325332 0.95224977 0.6710335 prediction 0.447585859127828 Functional Loss - PITRM1 ENSG00000107959 CDS Human protein_coding chr10:3189827 chr10:3189824 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_79213 0 0 1 0 1 PITRM1 chr10:3189764 5'GT 3189764 Upstream 61bp
chr20 31805399 31805399 1 + G T BLCA 31805396 + 31805376 31805416 41 CTCGGGTTGCTGGCCTTGCCCTTGGCACCACACAAGCAGCC CTCGGGTTGCTGGCCTTGCCCTTTGCACCACACAAGCAGCC < 41bp 0.723786518055775 0.325525077327471 0.079132676 0.05066088 prediction 0.44757303611155 Functional Loss - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31805396 chr20:31805399 nonsynonymous SNV 0.030 1 24 hm5C_associated_SNPs_79214 0 0 0 0 1 BPIFA3 chr20:31805469 5'GT 31805469 Upstream 71bp
chr3 52820426 52820426 1 + C T ACC 52820424 + 52820404 52820444 41 GAGCGCCTCTGGGCCTACCTCACCATCCAGGAGCTGCTGGC GAGCGCCTCTGGGCCTACCTCATCATCCAGGAGCTGCTGGC < 41bp 0.855579026465874 0.631795264945477 0.26058105 0.18312347 prediction 0.447567523040793 Functional Loss - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52820424 chr3:52820426 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_79218 0 0 0 0 1 ITIH1 chr3:52820450 5'GT 52820450 Upstream 25bp
chr2 1520688 1520688 1 + C T BLCA 1520686 + 1520666 1520706 41 CTCCCTCGGGTGACTTGGATCTCCATGTCGCTGGCTGCTCT CTCCCTCGGGTGACTTGGATCTTCATGTCGCTGGCTGCTCT < 41bp 0.863540203608949 0.639758924877424 0.9660467 0.91141653 prediction 0.447562557463052 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1520686 chr2:1520688 nonsynonymous SNV 0.047 3 23 hm5C_associated_SNPs_79220 0 0 0 0 2 TPO chr2:1520655 3'AG 1520655 Downstream 34bp
chr2 1520688 1520688 1 + C T BLCA 1520686 + 1520666 1520706 41 CTCCCTCGGGTGACTTGGATCTCCATGTCGCTGGCTGCTCT CTCCCTCGGGTGACTTGGATCTTCATGTCGCTGGCTGCTCT < 41bp 0.863540203608949 0.639758924877424 0.9660467 0.91141653 prediction 0.447562557463052 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1520686 chr2:1520688 nonsynonymous SNV 0.047 3 23 hm5C_associated_SNPs_79220 0 0 0 0 2 TPO chr2:1520754 5'GT 1520754 Upstream 67bp
chrX 135106547 135106547 1 + G T OV 135106545 + 135106525 135106565 41 GAGATACTGCCACTTATGCACGGCAAATGATGTTCAGCACC GAGATACTGCCACTTATGCACGTCAAATGATGTTCAGCACC < 41bp 0.723775885044687 0.376912570805594 0.070391625 0.1094183 prediction 0.447551770089375 Functional Loss - SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135106545 chrX:135106547 synonymous SNV . 0 23 hm5C_associated_SNPs_79224 0 0 0 0 2 SLC9A6 chrX:135106489 3'AG 135106489 Downstream 59bp
chrX 135106547 135106547 1 + G T OV 135106545 + 135106525 135106565 41 GAGATACTGCCACTTATGCACGGCAAATGATGTTCAGCACC GAGATACTGCCACTTATGCACGTCAAATGATGTTCAGCACC < 41bp 0.723775885044687 0.376912570805594 0.070391625 0.1094183 prediction 0.447551770089375 Functional Loss - SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135106545 chrX:135106547 synonymous SNV . 0 23 hm5C_associated_SNPs_79224 0 0 0 0 2 SLC9A6 chrX:135106642 5'GT 135106642 Upstream 96bp
chr9 136307848 136307848 1 + G A rs36221451 136307845 + 136307825 136307865 41 CGTGGCCAGAGGCCTGCGTGCTCGAACCCTGCCCTCCCTAG CGTGGCCAGAGGCCTGCGTGCTCAAACCCTGCCCTCCCTAG < 41bp 0.763674286257353 0.539898739014011 0.18051824 0.16323137 prediction 0.447551094486684 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136307845 chr9:136307848 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_79225 2 0 1 0 1 ADAMTS13 chr9:136307864 5'GT 136307864 Upstream 17bp
chr5 23510109 23510109 1 + G T HNSC 23510107 + 23510087 23510127 41 GGTGGATGACACAGAAGATTCTGATGAAGAATGGACCCCTA GGTGGATGACACAGAAGATTCTTATGAAGAATGGACCCCTA < 41bp 0.723774012044323 0.372465333622366 0.061311454 0.018544763 prediction 0.447548024088645 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23510107 chr5:23510109 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_79226 0 0 0 0 2 PRDM9 chr5:23510029 3'AG 23510029 Downstream 81bp
chr5 23510109 23510109 1 + G T HNSC 23510107 + 23510087 23510127 41 GGTGGATGACACAGAAGATTCTGATGAAGAATGGACCCCTA GGTGGATGACACAGAAGATTCTTATGAAGAATGGACCCCTA < 41bp 0.723774012044323 0.372465333622366 0.061311454 0.018544763 prediction 0.447548024088645 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23510107 chr5:23510109 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_79226 0 0 0 0 2 PRDM9 chr5:23510136 5'GT 23510136 Upstream 28bp
chr9 33342786 33342786 1 + C T SKCM 33342783 + 33342763 33342803 41 CTTTGATTTGTGGGAGGAAACTCCGTTGTGGCCTTCATAGG CTTTGATTTGTGGGAGGAAACTCTGTTGTGGCCTTCATAGG < 41bp 0.761110241839455 0.537336914777423 0.32699895 0.23520821 prediction 0.447546654124064 Functional Loss - NFX1 ENSG00000086102 CDS Human protein_coding chr9:33342783 chr9:33342786 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_79227 0 0 1 0 2 NFX1 chr9:33342744 3'AG 33342744 Downstream 43bp
chr9 33342786 33342786 1 + C T SKCM 33342783 + 33342763 33342803 41 CTTTGATTTGTGGGAGGAAACTCCGTTGTGGCCTTCATAGG CTTTGATTTGTGGGAGGAAACTCTGTTGTGGCCTTCATAGG < 41bp 0.761110241839455 0.537336914777423 0.32699895 0.23520821 prediction 0.447546654124064 Functional Loss - NFX1 ENSG00000086102 CDS Human protein_coding chr9:33342783 chr9:33342786 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_79227 0 0 1 0 2 NFX1 chr9:33342852 5'GT 33342852 Upstream 67bp
chr9 37762114 37762114 1 + G A STAD 37762111 + 37762091 37762131 41 ACAGGCAGTACGGCATGGTGCTCGGTGAGTGCGTGAATTGC ACAGGCAGTACGGCATGGTGCTCAGTGAGTGCGTGAATTGC < 41bp 0.789053782198566 0.565281627576779 0.1660409 0.10104886 prediction 0.447544309243572 Functional Loss - TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37762111 chr9:37762114 nonsynonymous SNV 0.712 2 24 hm5C_associated_SNPs_79229 0 0 1 0 1 TRMT10B chr9:37762114 5'GT 37762114 Upstream 1bp
chr19 13936385 13936385 1 + C T rs62620757 13936383 + 13936363 13936403 41 GGAGACCCCAAGTGGCTGCACACGGTACTGGGCTCCATCCA GGAGACCCCAAGTGGCTGCACATGGTACTGGGCTCCATCCA < 41bp 0.723770174470308 0.451743008109272 0.2705617 0.2588386 prediction 0.447540348940616 Functional Loss - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13936383 chr19:13936385 nonsynonymous SNV 0.895 1 23 hm5C_associated_SNPs_79231 0 0 0 0 1 ZSWIM4 chr19:13936364 3'AG 13936364 Downstream 22bp
chr10 75552519 75552519 1 + G A rs200013804 75552516 + 75552496 75552536 41 TCTGAATGCCCAGGATGGGGCTGGGGGCGAGGAAGAGAAGG TCTGAATGCCCAGGATGGGGCTGAGGGCGAGGAAGAGAAGG < 41bp 0.723766937174105 0.485324323052878 0.83245945 0.7158805 prediction 0.44753387434821 Functional Loss - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75552516 chr10:75552519 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_79232 0 0 1 0 1 ZSWIM8 chr10:75552610 5'GT 75552610 Upstream 92bp
chr1 160093831 160093831 1 + G A ESCA 160093828 + 160093808 160093848 41 TCCAAGATCATGGATTCCTTCAAGAACATGGTACCTCAGGT TCCAAGATCATGGATTCCTTCAAAAACATGGTACCTCAGGT < 41bp 0.723763682749897 0.479890341290147 0.11703861 0.07496327 prediction 0.447527365499793 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160093828 chr1:160093831 synonymous SNV . 0 24 hm5C_associated_SNPs_79234 0 0 0 0 1 ATP1A2 chr1:160093846 5'GT 160093846 Upstream 16bp
chr19 16614129 16614129 1 + G A UCEC 16614126 + 16614106 16614146 41 TGTCAAGCTTGTGTCCTCCCCGGGAAGGAGTGAGGCTGAGA TGTCAAGCTTGTGTCCTCCCCGGAAAGGAGTGAGGCTGAGA < 41bp 0.796813783923205 0.573052316053188 0.85053444 0.2691784 prediction 0.447522935740034 Functional Loss - C19orf44 ENSG00000105072 CDS Human protein_coding chr19:16614126 chr19:16614129 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_79235 0 0 0 0 1 C19orf44 chr19:16614191 5'GT 16614191 Upstream 63bp
chr2 155566185 155566185 1 + G A SKCM 155566182 + 155566162 155566202 41 ACTGGATGTAGGTTTTAGTACAGGGGCAGATCAACTTTTTC ACTGGATGTAGGTTTTAGTACAGAGGCAGATCAACTTTTTC < 41bp 0.761151620486204 0.537392871988857 0.6682967 0.21615714 prediction 0.447517496994694 Functional Loss - KCNJ3 ENSG00000162989 CDS Human protein_coding chr2:155566182 chr2:155566185 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_79239 0 0 0 0 1 KCNJ3 chr2:155566115 3'AG 155566115 Downstream 71bp
chr1 156314497 156314497 1 + C T rs41265043 156314495 + 156314475 156314515 41 ATCCAGACAACAAAGCTGCCCTCGGGTAAGGATGTAGGGAG ATCCAGACAACAAAGCTGCCCTTGGGTAAGGATGTAGGGAG < 41bp 0.826993362182605 0.603236513135294 0.12228146 0.114501566 prediction 0.447513698094621 Functional Loss - TSACC ENSG00000163467 CDS Human protein_coding chr1:156314495 chr1:156314497 nonsynonymous SNV 0.930 2 23 hm5C_associated_SNPs_79240 0 0 0 0 1 TSACC chr1:156314499 5'GT 156314499 Upstream 3bp
chr1 113236720 113236720 1 + G T OV 113236718 + 113236698 113236738 41 TTTTGTCCTCGGAGACACACCAGGAGGACCCCATCACATAT TTTTGTCCTCGGAGACACACCATGAGGACCCCATCACATAT < 41bp 0.907337172315682 0.683588222727096 0.8206043 0.06727281 prediction 0.447497899177172 Functional Loss - MOV10 ENSG00000155363 CDS Human protein_coding chr1:113236718 chr1:113236720 nonsynonymous SNV 0.882 1 23 hm5C_associated_SNPs_79246 0 0 1 0 2 MOV10 chr1:113236640 3'AG 113236640 Downstream 81bp
chr1 113236720 113236720 1 + G T OV 113236718 + 113236698 113236738 41 TTTTGTCCTCGGAGACACACCAGGAGGACCCCATCACATAT TTTTGTCCTCGGAGACACACCATGAGGACCCCATCACATAT < 41bp 0.907337172315682 0.683588222727096 0.8206043 0.06727281 prediction 0.447497899177172 Functional Loss - MOV10 ENSG00000155363 CDS Human protein_coding chr1:113236718 chr1:113236720 nonsynonymous SNV 0.882 1 23 hm5C_associated_SNPs_79246 0 0 1 0 2 MOV10 chr1:113236794 5'GT 113236794 Upstream 75bp
chr5 161324166 161324166 1 + C T SKCM 161324163 + 161324143 161324183 41 TAAGAAAAACAACACTTACGCTCCAACAGCAACCAGCTACA TAAGAAAAACAACACTTACGCTCTAACAGCAACCAGCTACA < 41bp 0.723745446651866 0.497286986433363 0.44122618 0.5787753 prediction 0.447490893303731 Functional Loss - GABRA1 ENSG00000022355 CDS Human protein_coding chr5:161324163 chr5:161324166 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_79247 0 0 0 0 1 GABRA1 chr5:161324117 3'AG 161324117 Downstream 50bp
chr1 156770179 156770179 1 + A C COAD 156770175 + 156770155 156770195 41 CCTTGCCACAGGCCAAGGAGCGGGAGCTGGAACTGAAGAAC CCTTGCCACAGGCCAAGGAGCGGGCGCTGGAACTGAAGAAC < 41bp 0.926877348052816 0.703134374285681 0.9115884 0.84750736 prediction 0.447485947534271 Functional Loss - PRCC ENSG00000143294 CDS Human protein_coding chr1:156770175 chr1:156770179 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_79248 0 0 1 0 1 PRCC chr1:156770166 3'AG 156770166 Downstream 14bp
chr17 33497162 33497162 1 + G A UCEC 33497159 + 33497139 33497179 41 GTGCAATATGTCCATAGACACTCGGACCCGACGCTGGGCAG GTGCAATATGTCCATAGACACTCAGACCCGACGCTGGGCAG < 41bp 0.794421162723882 0.570684788908758 0.18653828 0.09930289 prediction 0.447472747630248 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33497159 chr17:33497162 nonsynonymous SNV 0.991 0 24 hm5C_associated_SNPs_79253 0 0 0 0 1 UNC45B chr17:33497133 3'AG 33497133 Downstream 30bp
chr4 111436563 111436563 1 + T C LIHC 111436562 + 111436542 111436582 41 ATTTTGAGAATGCTTGAAGACTGGATAAAACCAGAGAATTT ATTTTGAGAATGCTTGAAGACCGGATAAAACCAGAGAATTT < 41bp 0.764417125474216 0.5406823689793 0.02276209 0.29033774 prediction 0.447469512989831 Functional Loss - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111436562 chr4:111436563 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_79255 0 0 0 0 2 ENPEP chr4:111436533 3'AG 111436533 Downstream 31bp
chr4 111436563 111436563 1 + T C LIHC 111436562 + 111436542 111436582 41 ATTTTGAGAATGCTTGAAGACTGGATAAAACCAGAGAATTT ATTTTGAGAATGCTTGAAGACCGGATAAAACCAGAGAATTT < 41bp 0.764417125474216 0.5406823689793 0.02276209 0.29033774 prediction 0.447469512989831 Functional Loss - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111436562 chr4:111436563 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_79255 0 0 0 0 2 ENPEP chr4:111436598 5'GT 111436598 Upstream 36bp
chr10 106128210 106128210 1 + C T SKCM 106128208 + 106128188 106128228 41 ATGAGAGAGCTGCAAAGGAACTCGAGCAATTTCAGATGAGA ATGAGAGAGCTGCAAAGGAACTTGAGCAATTTCAGATGAGA < 41bp 0.72373388618642 0.420927933157874 0.21489751 0.24492508 prediction 0.44746777237284 Functional Loss - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106128208 chr10:106128210 synonymous SNV . 0 23 hm5C_associated_SNPs_79257 0 0 0 0 1 CFAP58 chr10:106128181 3'AG 106128181 Downstream 30bp
chr6 43109925 43109925 1 + G A GBM 43109922 + 43109902 43109942 41 CCCGACAGGATGCACATCTTCCAGAATGGCTCCCTGGTGAT CCCGACAGGATGCACATCTTCCAAAATGGCTCCCTGGTGAT < 41bp 0.723732926185535 0.479110952598066 0.30053392 0.24507385 prediction 0.447465852371069 Functional Loss - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43109922 chr6:43109925 synonymous SNV . 0 24 hm5C_associated_SNPs_79258 0 0 1 0 1 PTK7 chr6:43109910 3'AG 43109910 Downstream 16bp
chr1 116534852 116534852 1 + C T rs4046190 116534849 + 116534829 116534869 41 CATTTCAGCAGCAGCTTCACCTCCATCGCCTCGGAGGTAAC CATTTCAGCAGCAGCTTCACCTCTATCGCCTCGGAGGTAAC < 41bp 0.72372386889948 0.487828807858622 0.94226635 0.8931699 prediction 0.447447737798961 Functional Loss - SLC22A15 ENSG00000163393 CDS Human protein_coding chr1:116534849 chr1:116534852 synonymous SNV . 0 24 hm5C_associated_SNPs_79261 0 0 0 0 1 SLC22A15 chr1:116534864 5'GT 116534864 Upstream 13bp
chr12 13367542 13367542 1 + G A STAD 13367539 + 13367519 13367559 41 GTGATGGAACGCAGTATCACCACGGCTATTCCTACATCCTG GTGATGGAACGCAGTATCACCACAGCTATTCCTACATCCTG < 41bp 0.758934237245392 0.535210591599173 0.40418464 0.584952 prediction 0.447447291292439 Functional Loss - EMP1 ENSG00000134531 CDS Human protein_coding chr12:13367539 chr12:13367542 nonsynonymous SNV 0.682 5 24 hm5C_associated_SNPs_79262 0 0 0 0 2 EMP1 chr12:13367468 3'AG 13367468 Downstream 75bp
chr12 13367542 13367542 1 + G A STAD 13367539 + 13367519 13367559 41 GTGATGGAACGCAGTATCACCACGGCTATTCCTACATCCTG GTGATGGAACGCAGTATCACCACAGCTATTCCTACATCCTG < 41bp 0.758934237245392 0.535210591599173 0.40418464 0.584952 prediction 0.447447291292439 Functional Loss - EMP1 ENSG00000134531 CDS Human protein_coding chr12:13367539 chr12:13367542 nonsynonymous SNV 0.682 5 24 hm5C_associated_SNPs_79262 0 0 0 0 2 EMP1 chr12:13367505 3'AG 13367505 Downstream 38bp
chr6 155143508 155143508 1 + G A rs372358045 155143505 + 155143485 155143525 41 AGGAGACAGTGGTCACAACCCAGGCAGAGGTTTTCCCTCCT AGGAGACAGTGGTCACAACCCAGACAGAGGTTTTCCCTCCT < 41bp 0.723718470071923 0.478458267662373 0.54106736 0.033627927 prediction 0.447436940143846 Functional Loss - SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155143505 chr6:155143508 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_79265 0 0 1 0 1 SCAF8 chr6:155143543 5'GT 155143543 Upstream 36bp
chr1 15953255 15953255 1 + A T SKCM 15953251 + 15953231 15953271 41 GGGACGTTGTGATTTTACGACAGAAGGAGAATGCAGACCCT GGGACGTTGTGATTTTACGACAGATGGAGAATGCAGACCCT < 41bp 0.723718079365074 0.393310566222506 0.29041195 0.3205409 prediction 0.447436158730147 Functional Loss - DDI2 ENSG00000197312 CDS Human protein_coding chr1:15953251 chr1:15953255 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_79267 0 0 1 0 2 DDI2 chr1:15953164 3'AG 15953164 Downstream 92bp
chr1 15953255 15953255 1 + A T SKCM 15953251 + 15953231 15953271 41 GGGACGTTGTGATTTTACGACAGAAGGAGAATGCAGACCCT GGGACGTTGTGATTTTACGACAGATGGAGAATGCAGACCCT < 41bp 0.723718079365074 0.393310566222506 0.29041195 0.3205409 prediction 0.447436158730147 Functional Loss - DDI2 ENSG00000197312 CDS Human protein_coding chr1:15953251 chr1:15953255 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_79267 0 0 1 0 2 DDI2 chr1:15953293 5'GT 15953293 Upstream 39bp
chr19 50905747 50905747 1 + G A KIRC 50905744 + 50905724 50905764 41 ACGGACATCGTCGGCTGCAACTGGCTGGAGCTCCCAGCTGG ACGGACATCGTCGGCTGCAACTGACTGGAGCTCCCAGCTGG < 41bp 0.808090479725705 0.584374844706614 0.33795768 0.1897636 prediction 0.447431270038181 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905744 chr19:50905747 stopgain 0.967 0 24 hm5C_associated_SNPs_79269 0 0 1 0 2 POLD1 chr19:50905711 3'AG 50905711 Downstream 37bp
chr19 50905747 50905747 1 + G A KIRC 50905744 + 50905724 50905764 41 ACGGACATCGTCGGCTGCAACTGGCTGGAGCTCCCAGCTGG ACGGACATCGTCGGCTGCAACTGACTGGAGCTCCCAGCTGG < 41bp 0.808090479725705 0.584374844706614 0.33795768 0.1897636 prediction 0.447431270038181 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905744 chr19:50905747 stopgain 0.967 0 24 hm5C_associated_SNPs_79269 0 0 1 0 2 POLD1 chr19:50905792 5'GT 50905792 Upstream 46bp
chr8 22472422 22472422 1 + C T rs201108674 22472420 + 22472400 22472440 41 GGTCTCCTTCCCTGGATGGCCTCGACCCCCAGGCTGACCCG GGTCTCCTTCCCTGGATGGCCTTGACCCCCAGGCTGACCCG < 41bp 0.856938441807719 0.633223374404659 0.8798126 0.7020971 prediction 0.447430134806121 Functional Loss - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22472420 chr8:22472422 synonymous SNV . 0 23 hm5C_associated_SNPs_79270 0 0 1 0 2 CCAR2 chr8:22472351 3'AG 22472351 Downstream 72bp
chr8 22472422 22472422 1 + C T rs201108674 22472420 + 22472400 22472440 41 GGTCTCCTTCCCTGGATGGCCTCGACCCCCAGGCTGACCCG GGTCTCCTTCCCTGGATGGCCTTGACCCCCAGGCTGACCCG < 41bp 0.856938441807719 0.633223374404659 0.8798126 0.7020971 prediction 0.447430134806121 Functional Loss - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22472420 chr8:22472422 synonymous SNV . 0 23 hm5C_associated_SNPs_79270 0 0 1 0 2 CCAR2 chr8:22472514 5'GT 22472514 Upstream 93bp
chr16 67228323 67228323 1 + G A CESC 67228320 + 67228300 67228340 41 GGAGATACCCTCTTGGCCATCCGGGCCCCATCAGGCACCAG GGAGATACCCTCTTGGCCATCCGAGCCCCATCAGGCACCAG < 41bp 0.791635599838019 0.567924407195065 0.22991553 0.3452231 prediction 0.447422385285909 Functional Loss - E2F4 ENSG00000205250 CDS Human protein_coding chr16:67228320 chr16:67228323 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_79273 0 0 1 0 2 E2F4 chr16:67228301 3'AG 67228301 Downstream 23bp
chr16 67228323 67228323 1 + G A CESC 67228320 + 67228300 67228340 41 GGAGATACCCTCTTGGCCATCCGGGCCCCATCAGGCACCAG GGAGATACCCTCTTGGCCATCCGAGCCCCATCAGGCACCAG < 41bp 0.791635599838019 0.567924407195065 0.22991553 0.3452231 prediction 0.447422385285909 Functional Loss - E2F4 ENSG00000205250 CDS Human protein_coding chr16:67228320 chr16:67228323 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_79273 0 0 1 0 2 E2F4 chr16:67228362 5'GT 67228362 Upstream 40bp
chr15 52497133 52497133 1 + G A SKCM 52497130 + 52497110 52497150 41 AGGCTGTTCAGCGTGACCGCCCCGATCAAGAAGAAGAGCTG AGGCTGTTCAGCGTGACCGCCCCAATCAAGAAGAAGAGCTG < 41bp 0.739510346579729 0.515801338920106 0.14465454 0.114863664 prediction 0.447418015319246 Functional Loss - MYO5C ENSG00000128833 CDS Human protein_coding chr15:52497130 chr15:52497133 synonymous SNV . 0 24 hm5C_associated_SNPs_79274 0 0 0 0 1 MYO5C chr15:52497086 3'AG 52497086 Downstream 48bp
chr8 76463689 76463689 1 + C T SKCM 76463687 + 76463667 76463707 41 TTTGATGGCAGCAACATCCCCTCCATTAACACACTGGCACA TTTGATGGCAGCAACATCCCCTTCATTAACACACTGGCACA < 41bp 0.869269367330799 0.645564768348952 0.9592415 0.12327677 prediction 0.447409197963693 Functional Loss - HNF4G ENSG00000164749 CDS Human protein_coding chr8:76463687 chr8:76463689 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_79275 0 0 0 0 2 HNF4G chr8:76463623 3'AG 76463623 Downstream 67bp
chr8 76463689 76463689 1 + C T SKCM 76463687 + 76463667 76463707 41 TTTGATGGCAGCAACATCCCCTCCATTAACACACTGGCACA TTTGATGGCAGCAACATCCCCTTCATTAACACACTGGCACA < 41bp 0.869269367330799 0.645564768348952 0.9592415 0.12327677 prediction 0.447409197963693 Functional Loss - HNF4G ENSG00000164749 CDS Human protein_coding chr8:76463687 chr8:76463689 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_79275 0 0 0 0 2 HNF4G chr8:76463729 5'GT 76463729 Upstream 41bp
chr9 131250230 131250230 1 + G T BLCA 131250227 + 131250207 131250247 41 AGGAGAAGATGCGGGAAGACCGGGATAGCCTGGTGGAGAGA AGGAGAAGATGCGGGAAGACCGGTATAGCCTGGTGGAGAGA < 41bp 0.915044159333487 0.691347388675061 0.89998424 0.40348846 prediction 0.447393541316853 Functional Loss - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131250227 chr9:131250230 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_79279 0 0 1 0 2 ODF2 chr9:131250169 3'AG 131250169 Downstream 62bp
chr9 131250230 131250230 1 + G T BLCA 131250227 + 131250207 131250247 41 AGGAGAAGATGCGGGAAGACCGGGATAGCCTGGTGGAGAGA AGGAGAAGATGCGGGAAGACCGGTATAGCCTGGTGGAGAGA < 41bp 0.915044159333487 0.691347388675061 0.89998424 0.40348846 prediction 0.447393541316853 Functional Loss - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131250227 chr9:131250230 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_79279 0 0 1 0 2 ODF2 chr9:131250304 5'GT 131250304 Upstream 75bp
chr2 101604651 101604651 1 + G T LUAD 101604648 + 101604628 101604668 41 GCAGTGACTCAGCCCCAGCTCGGGGCGGGCCCCCAACTTCC GCAGTGACTCAGCCCCAGCTCGGTGCGGGCCCCCAACTTCC < 41bp 0.933919196077214 0.710223861959104 0.93252486 0.5116783 prediction 0.447390668236219 Functional Loss - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101604648 chr2:101604651 synonymous SNV . 0 24 hm5C_associated_SNPs_79281 0 0 1 0 1 NPAS2 chr2:101604738 5'GT 101604738 Upstream 88bp
chr2 97356256 97356256 1 + G A ESCA 97356253 + 97356233 97356273 41 CCCATGGAGGCCCGGGAGAACGTGAAGTGCCCCCAAGGCTG CCCATGGAGGCCCGGGAGAACGTAAAGTGCCCCCAAGGCTG < 41bp 0.723693548315631 0.480435096592024 0.48228347 0.31789672 prediction 0.447387096631262 Functional Loss - FER1L5 ENSG00000249715 ncRNA_exonic Human protein_coding chr2:97356253 chr2:97356256 . . 0 24 hm5C_associated_SNPs_79282 0 0 0 0 2 FER1L5 chr2:97356224 3'AG 97356224 Downstream 33bp
chr2 97356256 97356256 1 + G A ESCA 97356253 + 97356233 97356273 41 CCCATGGAGGCCCGGGAGAACGTGAAGTGCCCCCAAGGCTG CCCATGGAGGCCCGGGAGAACGTAAAGTGCCCCCAAGGCTG < 41bp 0.723693548315631 0.480435096592024 0.48228347 0.31789672 prediction 0.447387096631262 Functional Loss - FER1L5 ENSG00000249715 ncRNA_exonic Human protein_coding chr2:97356253 chr2:97356256 . . 0 24 hm5C_associated_SNPs_79282 0 0 0 0 2 FER1L5 chr2:97356320 5'GT 97356320 Upstream 65bp
chr19 51295361 51295361 1 + G A GBM 51295358 + 51295338 51295378 41 GTTCCCCATGCGCAGCTGTCCCCGATACCACGAGCTGCTGC GTTCCCCATGCGCAGCTGTCCCCAATACCACGAGCTGCTGC < 41bp 0.723693504750331 0.485188015957521 0.11690238 0.028626323 prediction 0.447387009500661 Functional Loss - ACPT ENSG00000142513 CDS Human protein_coding chr19:51295358 chr19:51295361 nonsynonymous SNV 0.189 4 24 hm5C_associated_SNPs_79283 0 0 0 0 2 ACPT chr19:51295330 3'AG 51295330 Downstream 32bp
chr19 51295361 51295361 1 + G A GBM 51295358 + 51295338 51295378 41 GTTCCCCATGCGCAGCTGTCCCCGATACCACGAGCTGCTGC GTTCCCCATGCGCAGCTGTCCCCAATACCACGAGCTGCTGC < 41bp 0.723693504750331 0.485188015957521 0.11690238 0.028626323 prediction 0.447387009500661 Functional Loss - ACPT ENSG00000142513 CDS Human protein_coding chr19:51295358 chr19:51295361 nonsynonymous SNV 0.189 4 24 hm5C_associated_SNPs_79283 0 0 0 0 2 ACPT chr19:51295428 5'GT 51295428 Upstream 68bp
chr3 169637322 169637322 1 + G T LUAD 169637320 + 169637300 169637340 41 CTTTATTGACACCAACAGGGCAGCAGACAATCCCACTGATC CTTTATTGACACCAACAGGGCATCAGACAATCCCACTGATC < 41bp 0.72369220276192 0.389326360885085 0.09027207 0.027855456 prediction 0.44738440552384 Functional Loss - SAMD7 ENSG00000187033 CDS Human protein_coding chr3:169637320 chr3:169637322 nonsynonymous SNV 0.231 2 23 hm5C_associated_SNPs_79284 0 0 0 0 2 SAMD7 chr3:169637246 3'AG 169637246 Downstream 77bp
chr3 169637322 169637322 1 + G T LUAD 169637320 + 169637300 169637340 41 CTTTATTGACACCAACAGGGCAGCAGACAATCCCACTGATC CTTTATTGACACCAACAGGGCATCAGACAATCCCACTGATC < 41bp 0.72369220276192 0.389326360885085 0.09027207 0.027855456 prediction 0.44738440552384 Functional Loss - SAMD7 ENSG00000187033 CDS Human protein_coding chr3:169637320 chr3:169637322 nonsynonymous SNV 0.231 2 23 hm5C_associated_SNPs_79284 0 0 0 0 2 SAMD7 chr3:169637372 5'GT 169637372 Upstream 51bp
chr17 26554430 26554430 1 + C T STAD 26554428 + 26554408 26554448 41 TCGACGCCTACCCCATCAAACCCGAGGCTCCCGGCGAAGAC TCGACGCCTACCCCATCAAACCTGAGGCTCCCGGCGAAGAC < 41bp 0.72858565912245 0.504894234536759 0.27704203 0.2724267 prediction 0.447382849171383 Functional Loss - PYY2 ENSG00000237575 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:26554428 chr17:26554430 . . 0 23 hm5C_associated_SNPs_79285 0 0 0 0 1 PYY2 chr17:26554332 3'AG 26554332 Downstream 99bp
chr20 3781635 3781635 1 + G A BLCA 3781632 + 3781612 3781652 41 CTGCAGGATGGATTTGTCTTCAAGATGCCATGGAAGCCCAC CTGCAGGATGGATTTGTCTTCAAAATGCCATGGAAGCCCAC < 41bp 0.760387374076587 0.536699236235811 0.26730612 0.19605461 prediction 0.447376275681553 Functional Loss - CDC25B ENSG00000101224 CDS Human protein_coding chr20:3781632 chr20:3781635 synonymous SNV . 0 24 hm5C_associated_SNPs_79287 0 0 1 0 1 CDC25B chr20:3781618 3'AG 3781618 Downstream 18bp
chr2 220402018 220402018 1 + T C COAD 220402017 + 220401997 220402037 41 GGGCCAGCATCCTCACGTTGCTGGAGATCCTCGACTACATC GGGCCAGCATCCTCACGTTGCCGGAGATCCTCGACTACATC < 41bp 0.723687493988362 0.496049274010287 0.5119958 0.86534643 prediction 0.447374987976724 Functional Loss - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220402017 chr2:220402018 nonsynonymous SNV 0.879 4 22 hm5C_associated_SNPs_79289 0 0 1 0 1 ASIC4 chr2:220401964 3'AG 220401964 Downstream 55bp
chr8 22477160 22477160 1 + T C UCEC 22477159 + 22477139 22477179 41 TGTTTCAAACAGGCTGACAGCTGGGTGGAGAAGGAGGAGCC TGTTTCAAACAGGCTGACAGCCGGGTGGAGAAGGAGGAGCC < 41bp 0.75321300358243 0.529530561449233 0.44129002 0.8984004 prediction 0.447364884266394 Functional Loss - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22477159 chr8:22477160 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_79290 0 0 1 1 1 CCAR2 chr8:22477151 3'AG 22477151 Downstream 10bp
chr12 121660766 121660766 1 + G A KIRC 121660763 + 121660743 121660783 41 CTTGTAGGAGTCTCAACAGGCAGGTGCGTAGCTTTCAACGG CTTGTAGGAGTCTCAACAGGCAGATGCGTAGCTTTCAACGG < 41bp 0.784740134739659 0.561058240369958 0.81923777 0.61182815 prediction 0.447363788739402 Functional Loss - P2RX4;P2RX4 ENSG00000135124;ENSG00000135124 exonic;splicing Human protein_coding chr12:121660763 chr12:121660766 synonymous SNV 0.008 0 24 hm5C_associated_SNPs_79291 0 0 0 0 2 P2RX4 chr12:121660750 3'AG 121660750 Downstream 17bp
chr12 121660766 121660766 1 + G A KIRC 121660763 + 121660743 121660783 41 CTTGTAGGAGTCTCAACAGGCAGGTGCGTAGCTTTCAACGG CTTGTAGGAGTCTCAACAGGCAGATGCGTAGCTTTCAACGG < 41bp 0.784740134739659 0.561058240369958 0.81923777 0.61182815 prediction 0.447363788739402 Functional Loss - P2RX4;P2RX4 ENSG00000135124;ENSG00000135124 exonic;splicing Human protein_coding chr12:121660763 chr12:121660766 synonymous SNV 0.008 0 24 hm5C_associated_SNPs_79291 0 0 0 0 2 P2RX4 chr12:121660846 5'GT 121660846 Upstream 81bp
chr1 185191035 185191035 1 + G A SKCM 185191032 + 185191012 185191052 41 AAAACACAGTGACTAAAAAGCAGGAAGGTACTTCATTGAAG AAAACACAGTGACTAAAAAGCAGAAAGGTACTTCATTGAAG < 41bp 0.731897764898793 0.50821660928976 0.32188815 0.12907067 prediction 0.447362311218065 Functional Loss - SWT1 ENSG00000116668 CDS Human protein_coding chr1:185191032 chr1:185191035 nonsynonymous SNV 0.370 2 24 hm5C_associated_SNPs_79292 0 0 1 0 1 SWT1 chr1:185190981 3'AG 185190981 Downstream 55bp
chr9 99700195 99700195 1 + T C UCEC 99700194 + 99700174 99700214 41 CCGTCATTCACCCCCGATTCCTGGAAGAATTGCTTTCCCCA CCGTCATTCACCCCCGATTCCCGGAAGAATTGCTTTCCCCA < 41bp 0.796963738800884 0.573300917683181 0.8459773 0.9205801 prediction 0.447325642235405 Functional Loss - NUTM2G ENSG00000188152 CDS Human protein_coding chr9:99700194 chr9:99700195 nonsynonymous SNV 0.058 3 22 hm5C_associated_SNPs_79297 0 0 0 0 2 NUTM2G chr9:99700167 3'AG 99700167 Downstream 29bp
chr9 99700195 99700195 1 + T C UCEC 99700194 + 99700174 99700214 41 CCGTCATTCACCCCCGATTCCTGGAAGAATTGCTTTCCCCA CCGTCATTCACCCCCGATTCCCGGAAGAATTGCTTTCCCCA < 41bp 0.796963738800884 0.573300917683181 0.8459773 0.9205801 prediction 0.447325642235405 Functional Loss - NUTM2G ENSG00000188152 CDS Human protein_coding chr9:99700194 chr9:99700195 nonsynonymous SNV 0.058 3 22 hm5C_associated_SNPs_79297 0 0 0 0 2 NUTM2G chr9:99700283 5'GT 99700283 Upstream 89bp
chr3 189582120 189582120 1 + G A GBM 189582117 + 189582097 189582137 41 CTCCTCAGGGAGCTGTTATCCGCGCCATGCCTGTCTACAAA CTCCTCAGGGAGCTGTTATCCGCACCATGCCTGTCTACAAA < 41bp 0.748258218824061 0.524600793498506 0.669278 0.27217263 prediction 0.447314850651109 Functional Loss - TP63 ENSG00000073282 CDS Human protein_coding chr3:189582117 chr3:189582120 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_79299 0 0 0 0 1 TP63 chr3:189582021 3'AG 189582021 Downstream 100bp
chr1 201287754 201287754 1 + T C LIHC 201287753 + 201287733 201287773 41 CTCTGACCCCCAGGGCTGCTCTGGAACCTGTCTTCCACTGA CTCTGACCCCCAGGGCTGCTCCGGAACCTGTCTTCCACTGA < 41bp 0.799540124084948 0.575887516626822 0.701296 0.8104274 prediction 0.447305214916252 Functional Loss - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201287753 chr1:201287754 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_79300 0 0 0 0 1 PKP1 chr1:201287746 3'AG 201287746 Downstream 9bp
chr1 17548865 17548865 1 + G A rs141255010 17548862 + 17548842 17548882 41 CTTCATGGTCTACAACCGCACACGTGTGAAAGAGCCCATAG CTTCATGGTCTACAACCGCACACATGTGAAAGAGCCCATAG < 41bp 0.72364990897193 0.475727115870841 0.52347124 0.17717814 prediction 0.44729981794386 Functional Loss - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17548862 chr1:17548865 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_79302 0 0 0 0 1 PADI1 chr1:17548785 3'AG 17548785 Downstream 81bp
chrX 47060944 47060944 1 + C T SKCM 47060942 + 47060922 47060962 41 TTTGAGAGCGGGGACTTTGTCTCCTTTTCAGAAGTACAGGG TTTGAGAGCGGGGACTTTGTCTTCTTTTCAGAAGTACAGGG < 41bp 0.723647586982315 0.421227430284653 0.11088964 0.17440951 prediction 0.44729517396463 Functional Loss - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47060942 chrX:47060944 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_79304 0 0 1 0 2 UBA1 chrX:47060877 3'AG 47060877 Downstream 68bp
chrX 47060944 47060944 1 + C T SKCM 47060942 + 47060922 47060962 41 TTTGAGAGCGGGGACTTTGTCTCCTTTTCAGAAGTACAGGG TTTGAGAGCGGGGACTTTGTCTTCTTTTCAGAAGTACAGGG < 41bp 0.723647586982315 0.421227430284653 0.11088964 0.17440951 prediction 0.44729517396463 Functional Loss - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47060942 chrX:47060944 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_79304 0 0 1 0 2 UBA1 chrX:47061009 5'GT 47061009 Upstream 66bp
chr18 28983388 28983388 1 + G A SKCM 28983385 + 28983365 28983405 41 CCTTACTCTTTCAGATGGCTCTGGAAAAACAGCTACAGGAA CCTTACTCTTTCAGATGGCTCTGAAAAAACAGCTACAGGAA < 41bp 0.731410450458631 0.507764882816311 0.3798225 0.048069715 prediction 0.44729113528464 Functional Loss - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28983385 chr18:28983388 nonsynonymous SNV 0.949 0 24 hm5C_associated_SNPs_79305 0 0 0 0 1 DSG4 chr18:28983379 3'AG 28983379 Downstream 10bp
chr13 47286726 47286726 1 + C T SKCM 47286724 + 47286704 47286744 41 AGCTCCATTTGGCCTGAAGCCTCGATCAGGTAAATGAAAAC AGCTCCATTTGGCCTGAAGCCTTGATCAGGTAAATGAAAAC < 41bp 0.723642790986743 0.416952223224457 0.8007566 0.01875788 prediction 0.447285581973486 Functional Loss - LRCH1 ENSG00000136141 CDS Human protein_coding chr13:47286724 chr13:47286726 stopgain 1.000 1 23 hm5C_associated_SNPs_79307 0 0 0 0 2 LRCH1 chr13:47286660 3'AG 47286660 Downstream 67bp
chr13 47286726 47286726 1 + C T SKCM 47286724 + 47286704 47286744 41 AGCTCCATTTGGCCTGAAGCCTCGATCAGGTAAATGAAAAC AGCTCCATTTGGCCTGAAGCCTTGATCAGGTAAATGAAAAC < 41bp 0.723642790986743 0.416952223224457 0.8007566 0.01875788 prediction 0.447285581973486 Functional Loss - LRCH1 ENSG00000136141 CDS Human protein_coding chr13:47286724 chr13:47286726 stopgain 1.000 1 23 hm5C_associated_SNPs_79307 0 0 0 0 2 LRCH1 chr13:47286732 5'GT 47286732 Upstream 7bp
chr13 47286727 47286727 1 + G A UCEC 47286724 + 47286704 47286744 41 AGCTCCATTTGGCCTGAAGCCTCGATCAGGTAAATGAAAAC AGCTCCATTTGGCCTGAAGCCTCAATCAGGTAAATGAAAAC < 41bp 0.723642790986743 0.495329472112657 0.8007566 0.2373395 prediction 0.447285581973486 Functional Loss - LRCH1 ENSG00000136141 CDS Human protein_coding chr13:47286724 chr13:47286727 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_79308 0 0 0 0 2 LRCH1 chr13:47286660 3'AG 47286660 Downstream 68bp
chr13 47286727 47286727 1 + G A UCEC 47286724 + 47286704 47286744 41 AGCTCCATTTGGCCTGAAGCCTCGATCAGGTAAATGAAAAC AGCTCCATTTGGCCTGAAGCCTCAATCAGGTAAATGAAAAC < 41bp 0.723642790986743 0.495329472112657 0.8007566 0.2373395 prediction 0.447285581973486 Functional Loss - LRCH1 ENSG00000136141 CDS Human protein_coding chr13:47286724 chr13:47286727 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_79308 0 0 0 0 2 LRCH1 chr13:47286732 5'GT 47286732 Upstream 6bp
chr20 61440966 61440966 1 + T C STAD 61440965 + 61440945 61440985 41 ATTGAGGACATTCTTCAGAACTGGACGGACAACTATGACCT ATTGAGGACATTCTTCAGAACCGGACGGACAACTATGACCT < 41bp 0.794082619965483 0.570443154057359 0.38441777 0.6021418 prediction 0.447278931816248 Functional Loss - OGFR ENSG00000060491 CDS Human protein_coding chr20:61440965 chr20:61440966 nonsynonymous SNV 0.952 4 22 hm5C_associated_SNPs_79312 0 0 1 0 2 OGFR chr20:61440937 3'AG 61440937 Downstream 30bp
chr20 61440966 61440966 1 + T C STAD 61440965 + 61440945 61440985 41 ATTGAGGACATTCTTCAGAACTGGACGGACAACTATGACCT ATTGAGGACATTCTTCAGAACCGGACGGACAACTATGACCT < 41bp 0.794082619965483 0.570443154057359 0.38441777 0.6021418 prediction 0.447278931816248 Functional Loss - OGFR ENSG00000060491 CDS Human protein_coding chr20:61440965 chr20:61440966 nonsynonymous SNV 0.952 4 22 hm5C_associated_SNPs_79312 0 0 1 0 2 OGFR chr20:61441015 5'GT 61441015 Upstream 50bp
chr7 21516840 21516840 1 + C T UCEC 21516837 + 21516817 21516857 41 AAGTGCATTTGCAGCAAGGCCAGCAGACTTCTGATCAAGAG AAGTGCATTTGCAGCAAGGCCAGTAGACTTCTGATCAAGAG < 41bp 0.724870841094323 0.501231664316275 0.22262448 0.16092417 prediction 0.447278353556096 Functional Loss - SP4 ENSG00000105866 CDS Human protein_coding chr7:21516837 chr7:21516840 stopgain 0.993 1 24 hm5C_associated_SNPs_79313 0 0 1 0 1 SP4 chr7:21516925 5'GT 21516925 Upstream 86bp
chr9 119124940 119124940 1 + G A SKCM 119124937 + 119124917 119124957 41 ACGGCTCCTTCCATGTCTGCCAGGAGATGCAAGGCCAGTGC ACGGCTCCTTCCATGTCTGCCAGAAGATGCAAGGCCAGTGC < 41bp 0.723638382895934 0.488722323010385 0.9174721 0.81759906 prediction 0.447276765791868 Functional Loss - PAPPA ENSG00000182752 CDS Human protein_coding chr9:119124937 chr9:119124940 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_79314 0 0 0 0 2 PAPPA chr9:119124871 3'AG 119124871 Downstream 70bp
chr9 119124940 119124940 1 + G A SKCM 119124937 + 119124917 119124957 41 ACGGCTCCTTCCATGTCTGCCAGGAGATGCAAGGCCAGTGC ACGGCTCCTTCCATGTCTGCCAGAAGATGCAAGGCCAGTGC < 41bp 0.723638382895934 0.488722323010385 0.9174721 0.81759906 prediction 0.447276765791868 Functional Loss - PAPPA ENSG00000182752 CDS Human protein_coding chr9:119124937 chr9:119124940 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_79314 0 0 0 0 2 PAPPA chr9:119125018 5'GT 119125018 Upstream 79bp
chr16 1706741 1706741 1 + G A UCEC 1706738 + 1706718 1706758 41 GGACAGCCTGCCGCCAGGCCCCCGAAGGAGGTCCCCGCCAG GGACAGCCTGCCGCCAGGCCCCCAAAGGAGGTCCCCGCCAG < 41bp 0.79907337402254 0.57544072453888 0.1948837 0.30567488 prediction 0.44726529896732 Functional Loss - CRAMP1 ENSG00000007545 CDS Human protein_coding chr16:1706738 chr16:1706741 synonymous SNV . 0 24 hm5C_associated_SNPs_79319 0 0 0 0 1 CRAMP1 chr16:1706650 3'AG 1706650 Downstream 92bp
chr19 54653376 54653376 1 + C T LGG 54653374 + 54653354 54653394 41 ACAACTCAGGGGGACCCAGCCTCCTGGTGCCACTGCCTGTG ACAACTCAGGGGGACCCAGCCTTCTGGTGCCACTGCCTGTG < 41bp 0.723629159852773 0.433893316042332 0.1798054 0.0869863 prediction 0.447258319705547 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54653374 chr19:54653376 synonymous SNV . 0 23 hm5C_associated_SNPs_79321 0 0 0 0 1 CNOT3 chr19:54653295 3'AG 54653295 Downstream 82bp
chr12 12247660 12247660 1 + G A UCEC 12247657 + 12247637 12247677 41 GGGCTGTCCTACTCTGTTTTCAAGACCATCACAGACCAGGT GGGCTGTCCTACTCTGTTTTCAAAACCATCACAGACCAGGT < 41bp 0.780984247673684 0.557356421075792 0.3415206 0.16608924 prediction 0.447255653195785 Functional Loss - BCL2L14 ENSG00000121380 CDS Human protein_coding chr12:12247657 chr12:12247660 synonymous SNV . 0 24 hm5C_associated_SNPs_79322 0 0 0 0 1 BCL2L14 chr12:12247598 3'AG 12247598 Downstream 63bp
chr2 198324736 198324736 1 + G A COAD 198324733 + 198324713 198324753 41 TTTGCCTAAGGAGATATGTGCACGAACTTTCTTCAAAATCA TTTGCCTAAGGAGATATGTGCACAAACTTTCTTCAAAATCA < 41bp 0.751573839335054 0.527949044736542 0.037446916 0.0062007606 prediction 0.447249589197024 Functional Loss - COQ10B ENSG00000115520 CDS Human protein_coding chr2:198324733 chr2:198324736 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_79327 0 0 1 0 1 COQ10B chr2:198324656 3'AG 198324656 Downstream 81bp
chr20 16730565 16730565 1 + G T LUAD 16730563 + 16730543 16730583 41 CTTAGGTTTATGGTGATGGCCAGGACGAGATGGGAGTCGTG CTTAGGTTTATGGTGATGGCCATGACGAGATGGGAGTCGTG < 41bp 0.900028568783555 0.676404010291201 0.2600507 0.04592049 prediction 0.447249116984707 Functional Loss - OTOR ENSG00000125879 CDS Human protein_coding chr20:16730563 chr20:16730565 nonsynonymous SNV 0.970 0 23 hm5C_associated_SNPs_79328 0 0 0 0 2 OTOR chr20:16730548 3'AG 16730548 Downstream 18bp
chr20 16730565 16730565 1 + G T LUAD 16730563 + 16730543 16730583 41 CTTAGGTTTATGGTGATGGCCAGGACGAGATGGGAGTCGTG CTTAGGTTTATGGTGATGGCCATGACGAGATGGGAGTCGTG < 41bp 0.900028568783555 0.676404010291201 0.2600507 0.04592049 prediction 0.447249116984707 Functional Loss - OTOR ENSG00000125879 CDS Human protein_coding chr20:16730563 chr20:16730565 nonsynonymous SNV 0.970 0 23 hm5C_associated_SNPs_79328 0 0 0 0 2 OTOR chr20:16730655 5'GT 16730655 Upstream 91bp
chr10 106163596 106163596 1 + G T LUAD 106163593 + 106163573 106163613 41 ATGTGCACAGATGGAGGAAGCTCGAGGTAACATCTGGCAGC ATGTGCACAGATGGAGGAAGCTCTAGGTAACATCTGGCAGC < 41bp 0.922973239641029 0.699351833047713 0.7247391 0.74628043 prediction 0.447242813186632 Functional Loss - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106163593 chr10:106163596 stopgain 0.981 1 24 hm5C_associated_SNPs_79329 0 0 0 0 1 CFAP58 chr10:106163598 5'GT 106163598 Upstream 3bp
chr9 131105564 131105564 1 + C T STAD 131105562 + 131105542 131105582 41 TCTTCATCAAGACCATCAGGCGCGATATCTTGTGAGTACCT TCTTCATCAAGACCATCAGGCGTGATATCTTGTGAGTACCT < 41bp 0.723614845491631 0.448981124739029 0.40405267 0.3562749 prediction 0.447229690983261 Functional Loss - SLC27A4 ENSG00000167114 CDS Human protein_coding chr9:131105562 chr9:131105564 synonymous SNV . 0 23 hm5C_associated_SNPs_79333 0 0 1 0 1 SLC27A4 chr9:131105572 5'GT 131105572 Upstream 9bp
chr4 158041734 158041734 1 + G A UCEC 158041731 + 158041711 158041751 41 GCAGTCAGCAGAGGACCTTGCCCGAGTACCTGCCAACTCCA GCAGTCAGCAGAGGACCTTGCCCAAGTACCTGCCAACTCCA < 41bp 0.758824185789463 0.53520937184655 0.5406951 0.21889263 prediction 0.447229627885827 Functional Loss - GLRB ENSG00000109738 CDS Human protein_coding chr4:158041731 chr4:158041734 nonsynonymous SNV 0.418 2 24 hm5C_associated_SNPs_79334 0 0 1 0 2 GLRB chr4:158041708 3'AG 158041708 Downstream 27bp
chr4 158041734 158041734 1 + G A UCEC 158041731 + 158041711 158041751 41 GCAGTCAGCAGAGGACCTTGCCCGAGTACCTGCCAACTCCA GCAGTCAGCAGAGGACCTTGCCCAAGTACCTGCCAACTCCA < 41bp 0.758824185789463 0.53520937184655 0.5406951 0.21889263 prediction 0.447229627885827 Functional Loss - GLRB ENSG00000109738 CDS Human protein_coding chr4:158041731 chr4:158041734 nonsynonymous SNV 0.418 2 24 hm5C_associated_SNPs_79334 0 0 1 0 2 GLRB chr4:158041814 5'GT 158041814 Upstream 81bp
chr9 133346253 133346253 1 + G A OV 133346250 + 133346230 133346270 41 ATTCCCATCCCGGTCACTCCCAAGAACCCGTGGAGCATGGA ATTCCCATCCCGGTCACTCCCAAAAACCCGTGGAGCATGGA < 41bp 0.785174401895922 0.561560732480169 0.3248894 0.21789533 prediction 0.447227338831506 Functional Loss - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133346250 chr9:133346253 synonymous SNV . 0 24 hm5C_associated_SNPs_79335 0 0 0 0 2 ASS1 chr9:133346221 3'AG 133346221 Downstream 33bp
chr9 133346253 133346253 1 + G A OV 133346250 + 133346230 133346270 41 ATTCCCATCCCGGTCACTCCCAAGAACCCGTGGAGCATGGA ATTCCCATCCCGGTCACTCCCAAAAACCCGTGGAGCATGGA < 41bp 0.785174401895922 0.561560732480169 0.3248894 0.21789533 prediction 0.447227338831506 Functional Loss - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133346250 chr9:133346253 synonymous SNV . 0 24 hm5C_associated_SNPs_79335 0 0 0 0 2 ASS1 chr9:133346291 5'GT 133346291 Upstream 39bp
chr22 25597378 25597378 1 + C T STAD 25597376 + 25597356 25597396 41 CTGGGGAGATGGCGGAACAGCACGGAGCACCCGAACAGGCT CTGGGGAGATGGCGGAACAGCATGGAGCACCCGAACAGGCT < 41bp 0.81515165221484 0.591540866933079 0.43571663 0.42145437 prediction 0.447221570563523 Functional Loss - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25597376 chr22:25597378 synonymous SNV . 0 23 hm5C_associated_SNPs_79338 0 0 0 0 2 CRYBB3 chr22:25597344 3'AG 25597344 Downstream 35bp
chr22 25597378 25597378 1 + C T STAD 25597376 + 25597356 25597396 41 CTGGGGAGATGGCGGAACAGCACGGAGCACCCGAACAGGCT CTGGGGAGATGGCGGAACAGCATGGAGCACCCGAACAGGCT < 41bp 0.81515165221484 0.591540866933079 0.43571663 0.42145437 prediction 0.447221570563523 Functional Loss - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25597376 chr22:25597378 synonymous SNV . 0 23 hm5C_associated_SNPs_79338 0 0 0 0 2 CRYBB3 chr22:25597438 5'GT 25597438 Upstream 61bp
chr2 189860870 189860870 1 + G A LUAD 189860867 + 189860847 189860887 41 TCAGGGCATGCCCGGAAGTCCAGGAGGACCAGGAAGTGATG TCAGGGCATGCCCGGAAGTCCAGAAGGACCAGGAAGTGATG < 41bp 0.768078488681681 0.544471086597083 0.90490067 0.37613454 prediction 0.447214804169196 Functional Loss - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189860867 chr2:189860870 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_79342 0 0 0 0 2 COL3A1 chr2:189860851 3'AG 189860851 Downstream 20bp
chr2 189860870 189860870 1 + G A LUAD 189860867 + 189860847 189860887 41 TCAGGGCATGCCCGGAAGTCCAGGAGGACCAGGAAGTGATG TCAGGGCATGCCCGGAAGTCCAGAAGGACCAGGAAGTGATG < 41bp 0.768078488681681 0.544471086597083 0.90490067 0.37613454 prediction 0.447214804169196 Functional Loss - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189860867 chr2:189860870 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_79342 0 0 0 0 2 COL3A1 chr2:189860904 5'GT 189860904 Upstream 35bp
chr7 128482927 128482927 1 + G A UCEC 128482924 + 128482904 128482944 41 GACATTGACTTCGACATCATCAAGAATGACAACGACACCTT GACATTGACTTCGACATCATCAAAAATGACAACGACACCTT < 41bp 0.723607330467908 0.491577589164147 0.3386812 0.0619182 prediction 0.447214660935816 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128482924 chr7:128482927 synonymous SNV . 0 24 hm5C_associated_SNPs_79343 0 0 1 0 2 FLNC chr7:128482848 3'AG 128482848 Downstream 80bp
chr7 128482927 128482927 1 + G A UCEC 128482924 + 128482904 128482944 41 GACATTGACTTCGACATCATCAAGAATGACAACGACACCTT GACATTGACTTCGACATCATCAAAAATGACAACGACACCTT < 41bp 0.723607330467908 0.491577589164147 0.3386812 0.0619182 prediction 0.447214660935816 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128482924 chr7:128482927 synonymous SNV . 0 24 hm5C_associated_SNPs_79343 0 0 1 0 2 FLNC chr7:128483008 5'GT 128483008 Upstream 82bp
chr17 7611552 7611552 1 + C T rs115052099 7611550 + 7611530 7611570 41 GCCACGAGTTCCGCTCGCACCACGATTACTACATCATTGGT GCCACGAGTTCCGCTCGCACCATGATTACTACATCATTGGT < 41bp 0.845804089814194 0.622197504135121 0.37865412 0.14166799 prediction 0.447213171358146 Functional Loss - EFNB3 ENSG00000108947 CDS Human protein_coding chr17:7611550 chr17:7611552 synonymous SNV . 0 23 hm5C_associated_SNPs_79344 0 0 0 0 1 EFNB3 chr17:7611568 5'GT 7611568 Upstream 17bp
chr19 50028774 50028774 1 + C T UVM 50028772 + 50028752 50028792 41 GTCATCGGTGTCTTGCTACTCACGGCAGCGGCTGTAGGAGG GTCATCGGTGTCTTGCTACTCATGGCAGCGGCTGTAGGAGG < 41bp 0.78236436054899 0.558762244719397 0.3548639 0.3389709 prediction 0.447204231659186 Functional Loss - FCGRT ENSG00000104870 CDS Human protein_coding chr19:50028772 chr19:50028774 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_79348 0 0 1 0 2 FCGRT chr19:50028714 3'AG 50028714 Downstream 61bp
chr19 50028774 50028774 1 + C T UVM 50028772 + 50028752 50028792 41 GTCATCGGTGTCTTGCTACTCACGGCAGCGGCTGTAGGAGG GTCATCGGTGTCTTGCTACTCATGGCAGCGGCTGTAGGAGG < 41bp 0.78236436054899 0.558762244719397 0.3548639 0.3389709 prediction 0.447204231659186 Functional Loss - FCGRT ENSG00000104870 CDS Human protein_coding chr19:50028772 chr19:50028774 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_79348 0 0 1 0 2 FCGRT chr19:50028830 5'GT 50028830 Upstream 57bp
chr7 130024394 130024394 1 + G A GBM 130024391 + 130024371 130024411 41 CCTCAGAATCGCATGTGGCGCAAGACTCGGTCCCACACAGC CCTCAGAATCGCATGTGGCGCAAAACTCGGTCCCACACAGC < 41bp 0.786371198444943 0.562770288635865 0.34631452 0.18961471 prediction 0.447201819618156 Functional Loss - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130024391 chr7:130024394 synonymous SNV . 0 24 hm5C_associated_SNPs_79349 0 0 0 0 2 CPA1 chr7:130024377 3'AG 130024377 Downstream 18bp
chr7 130024394 130024394 1 + G A GBM 130024391 + 130024371 130024411 41 CCTCAGAATCGCATGTGGCGCAAGACTCGGTCCCACACAGC CCTCAGAATCGCATGTGGCGCAAAACTCGGTCCCACACAGC < 41bp 0.786371198444943 0.562770288635865 0.34631452 0.18961471 prediction 0.447201819618156 Functional Loss - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130024391 chr7:130024394 synonymous SNV . 0 24 hm5C_associated_SNPs_79349 0 0 0 0 2 CPA1 chr7:130024467 5'GT 130024467 Upstream 74bp
chr12 72338392 72338392 1 + C T LUSC 72338390 + 72338370 72338410 41 AGAGGATGTGCCCTGGTTCCCTCGGAAGATCTCTGAGTTAG AGAGGATGTGCCCTGGTTCCCTTGGAAGATCTCTGAGTTAG < 41bp 0.851885665842699 0.628287415413406 0.15120804 0.17634317 prediction 0.447196500858586 Functional Loss - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72338390 chr12:72338392 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_79351 0 0 0 0 2 TPH2 chr12:72338366 3'AG 72338366 Downstream 27bp
chr12 72338392 72338392 1 + C T LUSC 72338390 + 72338370 72338410 41 AGAGGATGTGCCCTGGTTCCCTCGGAAGATCTCTGAGTTAG AGAGGATGTGCCCTGGTTCCCTTGGAAGATCTCTGAGTTAG < 41bp 0.851885665842699 0.628287415413406 0.15120804 0.17634317 prediction 0.447196500858586 Functional Loss - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72338390 chr12:72338392 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_79351 0 0 0 0 2 TPH2 chr12:72338466 5'GT 72338466 Upstream 75bp
chr5 139218343 139218343 1 + A C THCA 139218339 + 139218319 139218359 41 CGGCCCCTGCTGCCCTCCTGCACCACCCGCCTCTGCCAGGT CGGCCCCTGCTGCCCTCCTGCACCCCCCGCCTCTGCCAGGT < 41bp 0.723593349231807 0.301769741475597 0.10693303 0.14300367 prediction 0.447186698463613 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139218339 chr5:139218343 nonsynonymous SNV 0.904 4 25 hm5C_associated_SNPs_79353 0 0 0 0 1 PSD2 chr5:139218357 5'GT 139218357 Upstream 15bp
chr19 48830826 48830826 1 + T C UCEC 48830825 + 48830805 48830845 41 TCCCTGAATCTCTGGTACGACTGCACGTGGAACAACGACAC TCCCTGAATCTCTGGTACGACCGCACGTGGAACAACGACAC < 41bp 0.826388128612453 0.602795137973204 0.2130993 0.115207136 prediction 0.447185981278499 Functional Loss - EMP3 ENSG00000142227 CDS Human protein_coding chr19:48830825 chr19:48830826 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_79354 0 0 1 0 2 EMP3 chr19:48830778 3'AG 48830778 Downstream 49bp
chr19 48830826 48830826 1 + T C UCEC 48830825 + 48830805 48830845 41 TCCCTGAATCTCTGGTACGACTGCACGTGGAACAACGACAC TCCCTGAATCTCTGGTACGACCGCACGTGGAACAACGACAC < 41bp 0.826388128612453 0.602795137973204 0.2130993 0.115207136 prediction 0.447185981278499 Functional Loss - EMP3 ENSG00000142227 CDS Human protein_coding chr19:48830825 chr19:48830826 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_79354 0 0 1 0 2 EMP3 chr19:48830880 5'GT 48830880 Upstream 55bp
chr19 54657010 54657010 1 + C T rs367687183 54657008 + 54656988 54657028 41 CAGTTGCCCACTGGCTCACCCGCGGCCCCTCCCCAGCCCTG CAGTTGCCCACTGGCTCACCCGTGGCCCCTCCCCAGCCCTG < 41bp 0.723591537809643 0.489010398526774 0.6949214 0.60446405 prediction 0.447183075619286 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54657008 chr19:54657010 synonymous SNV . 0 23 hm5C_associated_SNPs_79355 0 0 1 0 1 CNOT3 chr19:54656918 3'AG 54656918 Downstream 93bp
chr19 54657011 54657011 1 + G A rs114617329 54657008 + 54656988 54657028 41 CAGTTGCCCACTGGCTCACCCGCGGCCCCTCCCCAGCCCTG CAGTTGCCCACTGGCTCACCCGCAGCCCCTCCCCAGCCCTG < 41bp 0.723591537809643 0.468847789890556 0.6949214 0.10084587 prediction 0.447183075619286 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54657008 chr19:54657011 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_79356 0 0 1 0 1 CNOT3 chr19:54656918 3'AG 54656918 Downstream 94bp
chr2 95954337 95954337 1 + G T LUAD 95954335 + 95954315 95954355 41 CGTCCTATCCGGAAACGCCTCAGGTGAGGGGCTGCCAGGGC CGTCCTATCCGGAAACGCCTCATGTGAGGGGCTGCCAGGGC < 41bp 0.723591245038205 0.366834116162477 0.58808845 0.121325046 prediction 0.447182490076409 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95954335 chr2:95954337 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_79357 0 0 0 0 1 PROM2 chr2:95954337 5'GT 95954337 Upstream 1bp
chr7 55498973 55498973 1 + G A UCEC 55498970 + 55498950 55498990 41 TGTCCTGGGACCAGAGACATCACGGTTTCCAGCATTTGAAC TGTCCTGGGACCAGAGACATCACAGTTTCCAGCATTTGAAC < 41bp 0.73120114580367 0.507623568224722 0.395648 0.110952914 prediction 0.447155155157896 Functional Loss - LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55498970 chr7:55498973 nonsynonymous SNV 0.386 0 24 hm5C_associated_SNPs_79362 0 0 0 0 1 LANCL2 chr7:55498919 3'AG 55498919 Downstream 55bp
chrX 106884202 106884202 1 + C T LUSC 106884200 + 106884180 106884220 41 GCAGGTGCAGATCATATTATCACCATGGACCTACATGCTTC GCAGGTGCAGATCATATTATCATCATGGACCTACATGCTTC < 41bp 0.849138088151566 0.625563037883851 0.13336268 0.07579127 prediction 0.447150100535429 Functional Loss - PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106884200 chrX:106884202 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_79364 0 0 1 0 2 PRPS1 chrX:106884132 3'AG 106884132 Downstream 71bp
chrX 106884202 106884202 1 + C T LUSC 106884200 + 106884180 106884220 41 GCAGGTGCAGATCATATTATCACCATGGACCTACATGCTTC GCAGGTGCAGATCATATTATCATCATGGACCTACATGCTTC < 41bp 0.849138088151566 0.625563037883851 0.13336268 0.07579127 prediction 0.447150100535429 Functional Loss - PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106884200 chrX:106884202 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_79364 0 0 1 0 2 PRPS1 chrX:106884230 5'GT 106884230 Upstream 29bp
chr19 4234740 4234740 1 + C T SKCM 4234738 + 4234718 4234758 41 TACAGGTGCAGTGGGAGCCTCCCGGGTCCTGGCCCTTCCCA TACAGGTGCAGTGGGAGCCTCCTGGGTCCTGGCCCTTCCCA < 41bp 0.723570751720746 0.456292310984706 0.87263495 0.79738307 prediction 0.447141503441491 Functional Loss - EBI3 ENSG00000105246 CDS Human protein_coding chr19:4234738 chr19:4234740 synonymous SNV . 0 23 hm5C_associated_SNPs_79365 0 0 0 0 2 EBI3 chr19:4234664 3'AG 4234664 Downstream 77bp
chr19 4234740 4234740 1 + C T SKCM 4234738 + 4234718 4234758 41 TACAGGTGCAGTGGGAGCCTCCCGGGTCCTGGCCCTTCCCA TACAGGTGCAGTGGGAGCCTCCTGGGTCCTGGCCCTTCCCA < 41bp 0.723570751720746 0.456292310984706 0.87263495 0.79738307 prediction 0.447141503441491 Functional Loss - EBI3 ENSG00000105246 CDS Human protein_coding chr19:4234738 chr19:4234740 synonymous SNV . 0 23 hm5C_associated_SNPs_79365 0 0 0 0 2 EBI3 chr19:4234821 5'GT 4234821 Upstream 82bp
chr6 36189968 36189968 1 + G T SARC 36189966 + 36189946 36189986 41 GGTCTGACGCCCCCCAAACGCAGCCGTGGGAAGCCAGCCCT GGTCTGACGCCCCCCAAACGCATCCGTGGGAAGCCAGCCCT < 41bp 0.723562822684383 0.36589583002188 0.8359771 0.33955008 prediction 0.447125645368765 Functional Loss - BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36189966 chr6:36189968 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_79368 0 0 1 0 2 BRPF3 chr6:36189945 3'AG 36189945 Downstream 24bp
chr6 36189968 36189968 1 + G T SARC 36189966 + 36189946 36189986 41 GGTCTGACGCCCCCCAAACGCAGCCGTGGGAAGCCAGCCCT GGTCTGACGCCCCCCAAACGCATCCGTGGGAAGCCAGCCCT < 41bp 0.723562822684383 0.36589583002188 0.8359771 0.33955008 prediction 0.447125645368765 Functional Loss - BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36189966 chr6:36189968 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_79368 0 0 1 0 2 BRPF3 chr6:36190042 5'GT 36190042 Upstream 75bp
chr2 111562899 111562899 1 + G A HNSC 111562896 + 111562876 111562916 41 GCCTATTAGGAACAAGAGTGCAAGATTCAATGCCATGCTGG GCCTATTAGGAACAAGAGTGCAAAATTCAATGCCATGCTGG < 41bp 0.723558372435112 0.482572708877645 0.5094478 0.16439089 prediction 0.447116744870224 Functional Loss - ACOXL ENSG00000153093 CDS Human protein_coding chr2:111562896 chr2:111562899 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_79370 0 0 0 0 2 ACOXL chr2:111562840 3'AG 111562840 Downstream 60bp
chr2 111562899 111562899 1 + G A HNSC 111562896 + 111562876 111562916 41 GCCTATTAGGAACAAGAGTGCAAGATTCAATGCCATGCTGG GCCTATTAGGAACAAGAGTGCAAAATTCAATGCCATGCTGG < 41bp 0.723558372435112 0.482572708877645 0.5094478 0.16439089 prediction 0.447116744870224 Functional Loss - ACOXL ENSG00000153093 CDS Human protein_coding chr2:111562896 chr2:111562899 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_79370 0 0 0 0 2 ACOXL chr2:111562972 5'GT 111562972 Upstream 74bp
chr3 9788023 9788023 1 + C T LUAD 9788020 + 9788000 9788040 41 TGCCCCGAGAAGGTATGTTCCACCATGGGGTTCCCATCCCT TGCCCCGAGAAGGTATGTTCCACTATGGGGTTCCCATCCCT < 41bp 0.736322604039037 0.512767271105379 0.15718076 0.13951698 prediction 0.447110665867317 Functional Loss - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9788020 chr3:9788023 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_79372 0 0 0 0 1 BRPF1 chr3:9787984 3'AG 9787984 Downstream 40bp
chr17 1933486 1933486 1 + G T SARC 1933483 + 1933463 1933503 41 GATGGCGGCGCTGGTCGTATCCGGGGCAGCGGAGCAGGGCG GATGGCGGCGCTGGTCGTATCCGTGGCAGCGGAGCAGGGCG < 41bp 0.927890670844255 0.704338813752487 0.9181192 0.863608 prediction 0.447103714183537 Functional Loss - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1933483 chr17:1933486 nonsynonymous SNV 0.042 0 24 hm5C_associated_SNPs_79377 0 0 1 0 1 DPH1 chr17:1933524 5'GT 1933524 Upstream 39bp
chr14 103803041 103803041 1 + T C STAD 103803040 + 103803020 103803060 41 CCAAATATTTTGGTTGTGAGCTGGGAGCACAGACCCAGTTT CCAAATATTTTGGTTGTGAGCCGGGAGCACAGACCCAGTTT < 41bp 0.744419705716875 0.520869137419361 0.14983931 0.47393924 prediction 0.447101136595029 Functional Loss - EIF5 ENSG00000100664 CDS Human protein_coding chr14:103803040 chr14:103803041 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_79378 0 0 1 0 1 EIF5 chr14:103803014 3'AG 103803014 Downstream 28bp
chr3 56603413 56603413 1 + C T rs143181508 56603411 + 56603391 56603431 41 GGCCTCAGGAAGCTTTTACTCACGGTGGAAGGCAAAGGGGG GGCCTCAGGAAGCTTTTACTCATGGTGGAAGGCAAAGGGGG < 41bp 0.733968856828542 0.510424552405736 0.85043454 0.8864106 prediction 0.447088608845611 Functional Loss - CCDC66 ENSG00000180376 UTR3 Human protein_coding chr3:56603411 chr3:56603413 . . 0 23 hm5C_associated_SNPs_79379 0 0 1 0 1 CCDC66 chr3:56603341 3'AG 56603341 Downstream 73bp
chr7 89982286 89982286 1 + C T OV 89982284 + 89982264 89982304 41 ACAACTTAAAGACAGGTATCCTCGGAAACGGTTTGTGGCTG ACAACTTAAAGACAGGTATCCTTGGAAACGGTTTGTGGCTG < 41bp 0.723537119751051 0.438102532528071 0.71448153 0.39705527 prediction 0.447074239502102 Functional Loss - GTPBP10 ENSG00000105793 CDS Human protein_coding chr7:89982284 chr7:89982286 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_79382 0 0 1 0 1 GTPBP10 chr7:89982323 5'GT 89982323 Upstream 38bp
chr7 89982285 89982285 1 + T C UCEC 89982284 + 89982264 89982304 41 ACAACTTAAAGACAGGTATCCTCGGAAACGGTTTGTGGCTG ACAACTTAAAGACAGGTATCCCCGGAAACGGTTTGTGGCTG < 41bp 0.723537119751051 0.474951745977684 0.71448153 0.70385283 prediction 0.447074239502102 Functional Loss - GTPBP10 ENSG00000105793 CDS Human protein_coding chr7:89982284 chr7:89982285 synonymous SNV . 0 22 hm5C_associated_SNPs_79383 0 0 1 0 1 GTPBP10 chr7:89982323 5'GT 89982323 Upstream 39bp
chr19 47761828 47761828 1 + G A COAD 47761825 + 47761805 47761845 41 CCCGGTCTCAGGCAGCCACACTCGATTTGAAATCAAAGGAG CCCGGTCTCAGGCAGCCACACTCAATTTGAAATCAAAGGAG < 41bp 0.79397317379339 0.570438800302046 0.4335906 0.10008252 prediction 0.447068746982688 Functional Loss - CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47761825 chr19:47761828 nonsynonymous SNV 0.845 4 24 hm5C_associated_SNPs_79384 0 0 1 0 2 CCDC9 chr19:47761816 3'AG 47761816 Downstream 13bp
chr19 47761828 47761828 1 + G A COAD 47761825 + 47761805 47761845 41 CCCGGTCTCAGGCAGCCACACTCGATTTGAAATCAAAGGAG CCCGGTCTCAGGCAGCCACACTCAATTTGAAATCAAAGGAG < 41bp 0.79397317379339 0.570438800302046 0.4335906 0.10008252 prediction 0.447068746982688 Functional Loss - CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47761825 chr19:47761828 nonsynonymous SNV 0.845 4 24 hm5C_associated_SNPs_79384 0 0 1 0 2 CCDC9 chr19:47761920 5'GT 47761920 Upstream 93bp
chr5 137522831 137522831 1 + T C BLCA 137522830 + 137522810 137522850 41 ACAACATGGTGCTAGTGAAACTGGACCTTCGGAAGAAGGCA ACAACATGGTGCTAGTGAAACCGGACCTTCGGAAGAAGGCA < 41bp 0.739608555220223 0.516086339399385 0.25680438 0.27581024 prediction 0.447044431641676 Functional Loss - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137522830 chr5:137522831 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_79386 0 0 1 0 1 KIF20A chr5:137522785 3'AG 137522785 Downstream 47bp
chr12 8248234 8248234 1 + G A STAD 8248231 + 8248211 8248251 41 TTGGATTCTCCTGCTCCTGTCACGACACCAGCACCAACTCC TTGGATTCTCCTGCTCCTGTCACAACACCAGCACCAACTCC < 41bp 0.791483719183914 0.567963251382042 0.10458338 0.108958095 prediction 0.447040935603745 Functional Loss - NECAP1 ENSG00000089818 CDS Human protein_coding chr12:8248231 chr12:8248234 synonymous SNV . 0 24 hm5C_associated_SNPs_79387 0 0 1 0 2 NECAP1 chr12:8248197 3'AG 8248197 Downstream 38bp
chr12 8248234 8248234 1 + G A STAD 8248231 + 8248211 8248251 41 TTGGATTCTCCTGCTCCTGTCACGACACCAGCACCAACTCC TTGGATTCTCCTGCTCCTGTCACAACACCAGCACCAACTCC < 41bp 0.791483719183914 0.567963251382042 0.10458338 0.108958095 prediction 0.447040935603745 Functional Loss - NECAP1 ENSG00000089818 CDS Human protein_coding chr12:8248231 chr12:8248234 synonymous SNV . 0 24 hm5C_associated_SNPs_79387 0 0 1 0 2 NECAP1 chr12:8248299 5'GT 8248299 Upstream 66bp
chr5 139193289 139193289 1 + G A rs3797903 139193286 + 139193266 139193306 41 TGAAGATGGCCCTCAGGGCCCAGGGGGGGATGAGGATGATG TGAAGATGGCCCTCAGGGCCCAGAGGGGGATGAGGATGATG < 41bp 0.801080968020843 0.577562585948532 0.7347585 0.5902165 prediction 0.447036764144622 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139193286 chr5:139193289 nonsynonymous SNV 0.429 0 24 hm5C_associated_SNPs_79388 0 0 0 0 1 PSD2 chr5:139193343 5'GT 139193343 Upstream 55bp
chr1 207269885 207269885 1 + G A UCEC 207269882 + 207269862 207269902 41 CTCAGGGGACTGTGACCCTCCTGGGAATCCAGTTCATGGCT CTCAGGGGACTGTGACCCTCCTGAGAATCCAGTTCATGGCT < 41bp 0.756235093113673 0.532719826749415 0.3437863 0.16886345 prediction 0.447030532728515 Functional Loss - C4BPB ENSG00000123843 CDS Human protein_coding chr1:207269882 chr1:207269885 nonsynonymous SNV 0.950 0 24 hm5C_associated_SNPs_79391 0 0 1 0 2 C4BPB chr1:207269867 3'AG 207269867 Downstream 19bp
chr1 207269885 207269885 1 + G A UCEC 207269882 + 207269862 207269902 41 CTCAGGGGACTGTGACCCTCCTGGGAATCCAGTTCATGGCT CTCAGGGGACTGTGACCCTCCTGAGAATCCAGTTCATGGCT < 41bp 0.756235093113673 0.532719826749415 0.3437863 0.16886345 prediction 0.447030532728515 Functional Loss - C4BPB ENSG00000123843 CDS Human protein_coding chr1:207269882 chr1:207269885 nonsynonymous SNV 0.950 0 24 hm5C_associated_SNPs_79391 0 0 1 0 2 C4BPB chr1:207269960 5'GT 207269960 Upstream 76bp
chr2 112686861 112686861 1 + G T LUAD 112686859 + 112686839 112686879 41 CCAGCCTGGAAGACCACATACAGGAAACGTAGCCATTCCCC CCAGCCTGGAAGACCACATACATGAAACGTAGCCATTCCCC < 41bp 0.90543477220579 0.681925868524348 0.7746358 0.3726396 prediction 0.447017807362885 Functional Loss - MERTK ENSG00000153208 CDS Human protein_coding chr2:112686859 chr2:112686861 stopgain 0.002 0 23 hm5C_associated_SNPs_79395 0 0 1 0 1 MERTK chr2:112686881 5'GT 112686881 Upstream 21bp
chr19 19212626 19212626 1 + G T SARC 19212624 + 19212604 19212644 41 AGTGCTCAGCTCCCTGCTGTCTGGGGCCCTGGCTGGTGCCC AGTGCTCAGCTCCCTGCTGTCTTGGGCCCTGGCTGGTGCCC < 41bp 0.917233311490047 0.693724805667461 0.8842782 0.29160124 prediction 0.447017011645173 Functional Loss - SLC25A42 ENSG00000181035 CDS Human protein_coding chr19:19212624 chr19:19212626 nonsynonymous SNV 0.970 5 23 hm5C_associated_SNPs_79396 0 0 1 0 1 SLC25A42 chr19:19212695 5'GT 19212695 Upstream 70bp
chr1 119683216 119683216 1 - C T LGG 119683219 - 119683199 119683239 41 GTGAGCGCTGGAGCTTCATCCGGGCACTTCATAAGGGATCC GTGAGCGCTGGAGCTTCATCCGGACACTTCATAAGGGATCC < 41bp 0.769842764786356 0.546336282186713 0.9091753 0.7472547 prediction 0.447012965199286 Functional Loss - WARS2 ENSG00000116874 CDS Human protein_coding chr1:119683219 chr1:119683216 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_79397 0 0 1 0 1 WARS2 chr1:119683178 5'GT 119683178 Upstream 39bp
chr11 134182780 134182780 1 + G T LUAD 134182778 + 134182758 134182798 41 GACCTGCACATTCCTGAACTCAGGGTATGTAATTTGAGAGT GACCTGCACATTCCTGAACTCATGGTATGTAATTTGAGAGT < 41bp 0.72350383173705 0.374658792174105 0.91080976 0.37042558 prediction 0.4470076634741 Functional Loss - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134182778 chr11:134182780 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_79398 0 0 0 3 1 GLB1L3 chr11:134182710 3'AG 134182710 Downstream 71bp
chr4 151170776 151170776 1 + G T UCEC 151170774 + 151170754 151170794 41 AGGTGACAGGTAAACTAAAACAGCACTTTAATAATGCGCTC AGGTGACAGGTAAACTAAAACATCACTTTAATAATGCGCTC < 41bp 0.723503732122878 0.391847449300423 0.31818897 0.16187137 prediction 0.447007464245756 Functional Loss - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151170774 chr4:151170776 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_79399 0 0 0 19 2 DCLK2 chr4:151170720 3'AG 151170720 Downstream 57bp
chr4 151170776 151170776 1 + G T UCEC 151170774 + 151170754 151170794 41 AGGTGACAGGTAAACTAAAACAGCACTTTAATAATGCGCTC AGGTGACAGGTAAACTAAAACATCACTTTAATAATGCGCTC < 41bp 0.723503732122878 0.391847449300423 0.31818897 0.16187137 prediction 0.447007464245756 Functional Loss - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151170774 chr4:151170776 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_79399 0 0 0 19 2 DCLK2 chr4:151170836 5'GT 151170836 Upstream 61bp
chr18 28913648 28913648 1 + G A LGG 28913645 + 28913625 28913665 41 GTGAGTGCAACATTAAAATCCTCGATGTCAATGATAATATC GTGAGTGCAACATTAAAATCCTCAATGTCAATGATAATATC < 41bp 0.738824222280626 0.515321378255299 0.31088358 0.09309003 prediction 0.447005688050654 Functional Loss - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28913645 chr18:28913648 nonsynonymous SNV 0.980 4 24 hm5C_associated_SNPs_79400 0 0 0 0 2 DSG1 chr18:28913552 3'AG 28913552 Downstream 97bp
chr18 28913648 28913648 1 + G A LGG 28913645 + 28913625 28913665 41 GTGAGTGCAACATTAAAATCCTCGATGTCAATGATAATATC GTGAGTGCAACATTAAAATCCTCAATGTCAATGATAATATC < 41bp 0.738824222280626 0.515321378255299 0.31088358 0.09309003 prediction 0.447005688050654 Functional Loss - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28913645 chr18:28913648 nonsynonymous SNV 0.980 4 24 hm5C_associated_SNPs_79400 0 0 0 0 2 DSG1 chr18:28913686 5'GT 28913686 Upstream 39bp
chr22 49103654 49103654 1 + A C SKCM 49103653 + 49103633 49103673 41 GGCGGGAGGATAAAGACCACCACGGTATGTGGCCCTCGGCT GGCGGGAGGATAAAGACCACCCCGGTATGTGGCCCTCGGCT < 41bp 0.804235669025251 0.580734137551844 0.32266796 0.19159272 prediction 0.447003062946814 Functional Loss - FAM19A5 ENSG00000219438 CDS Human protein_coding chr22:49103653 chr22:49103654 nonsynonymous SNV 0.984 3 22 hm5C_associated_SNPs_79401 0 0 0 0 1 FAM19A5 chr22:49103656 5'GT 49103656 Upstream 3bp
chr1 22927868 22927868 1 + G T LUAD 22927865 + 22927845 22927885 41 GGTGGCGGTGGGGGCCTCACCGTGGGGGACTGGCTGGACTC GGTGGCGGTGGGGGCCTCACCGTTGGGGACTGGCTGGACTC < 41bp 0.932076558474582 0.708575254501116 0.9392142 0.25218993 prediction 0.447002607946931 Functional Loss - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22927865 chr1:22927868 synonymous SNV . 0 24 hm5C_associated_SNPs_79402 0 0 0 0 2 EPHA8 chr1:22927793 3'AG 22927793 Downstream 76bp
chr1 22927868 22927868 1 + G T LUAD 22927865 + 22927845 22927885 41 GGTGGCGGTGGGGGCCTCACCGTGGGGGACTGGCTGGACTC GGTGGCGGTGGGGGCCTCACCGTTGGGGACTGGCTGGACTC < 41bp 0.932076558474582 0.708575254501116 0.9392142 0.25218993 prediction 0.447002607946931 Functional Loss - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22927865 chr1:22927868 synonymous SNV . 0 24 hm5C_associated_SNPs_79402 0 0 0 0 2 EPHA8 chr1:22927966 5'GT 22927966 Upstream 99bp
chr5 236650 236650 1 + G A UCEC 236647 + 236627 236667 41 GCCAACCGCCTCGGGGCAAACTCGCTCTTGGACCTGGTTGT GCCAACCGCCTCGGGGCAAACTCACTCTTGGACCTGGTTGT < 41bp 0.79337791239773 0.569879169010886 0.4202269 0.24928436 prediction 0.446997486773689 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:236647 chr5:236650 synonymous SNV . 0 24 hm5C_associated_SNPs_79403 3 0 1 0 1 SDHA chr5:236714 5'GT 236714 Upstream 65bp
chr19 14581019 14581019 1 + G A LUAD 14581016 + 14580996 14581036 41 CCAGCACATTCTGTGGGACCCCGGAGTTCCTGGCCCCTGAG CCAGCACATTCTGTGGGACCCCGAAGTTCCTGGCCCCTGAG < 41bp 0.763687289663605 0.540188697528046 0.8988528 0.81414086 prediction 0.446997184271118 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14581016 chr19:14581019 nonsynonymous SNV 0.942 1 24 hm5C_associated_SNPs_79404 0 0 1 0 2 PKN1 chr19:14580975 3'AG 14580975 Downstream 45bp
chr19 14581019 14581019 1 + G A LUAD 14581016 + 14580996 14581036 41 CCAGCACATTCTGTGGGACCCCGGAGTTCCTGGCCCCTGAG CCAGCACATTCTGTGGGACCCCGAAGTTCCTGGCCCCTGAG < 41bp 0.763687289663605 0.540188697528046 0.8988528 0.81414086 prediction 0.446997184271118 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14581016 chr19:14581019 nonsynonymous SNV 0.942 1 24 hm5C_associated_SNPs_79404 0 0 1 0 2 PKN1 chr19:14581117 5'GT 14581117 Upstream 99bp
chr19 35837105 35837105 1 + G A COAD 35837102 + 35837082 35837122 41 CCTCCCCCGGACTGCGATGACACGGTCACTTATTCAGCATT CCTCCCCCGGACTGCGATGACACAGTCACTTATTCAGCATT < 41bp 0.78973644729763 0.566238321734616 0.48147267 0.10515955 prediction 0.446996251126029 Functional Loss - CD22 ENSG00000012124 CDS Human protein_coding chr19:35837102 chr19:35837105 synonymous SNV . 0 24 hm5C_associated_SNPs_79405 0 0 0 0 2 CD22 chr19:35837054 3'AG 35837054 Downstream 52bp
chr19 35837105 35837105 1 + G A COAD 35837102 + 35837082 35837122 41 CCTCCCCCGGACTGCGATGACACGGTCACTTATTCAGCATT CCTCCCCCGGACTGCGATGACACAGTCACTTATTCAGCATT < 41bp 0.78973644729763 0.566238321734616 0.48147267 0.10515955 prediction 0.446996251126029 Functional Loss - CD22 ENSG00000012124 CDS Human protein_coding chr19:35837102 chr19:35837105 synonymous SNV . 0 24 hm5C_associated_SNPs_79405 0 0 0 0 2 CD22 chr19:35837138 5'GT 35837138 Upstream 34bp
chr7 43635615 43635615 1 + G A HNSC 43635612 + 43635592 43635632 41 ATTGTCGGATGGAAATAATTCATGAGATTGCTGTACTTGAA ATTGTCGGATGGAAATAATTCATAAGATTGCTGTACTTGAA < 41bp 0.72576180805262 0.50226514308339 0.25692743 0.15086818 prediction 0.446993329938459 Functional Loss - STK17A ENSG00000164543 CDS Human protein_coding chr7:43635612 chr7:43635615 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_79407 0 0 1 0 1 STK17A chr7:43635712 5'GT 43635712 Upstream 98bp
chr6 144081764 144081764 1 + G A SKCM 144081761 + 144081741 144081781 41 CCCAAGCCAGCAAGCCGAAACACGACCCGAGAGGCTGGTGA CCCAAGCCAGCAAGCCGAAACACAACCCGAGAGGCTGGTGA < 41bp 0.762269482566868 0.538773292890892 0.4095711 0.3688431 prediction 0.446992379351952 Functional Loss - PHACTR2 ENSG00000112419 CDS Human protein_coding chr6:144081761 chr6:144081764 synonymous SNV . 0 24 hm5C_associated_SNPs_79408 0 0 0 0 1 PHACTR2 chr6:144081777 5'GT 144081777 Upstream 14bp
chr6 71567716 71567716 1 + A T OV 71567712 + 71567692 71567732 41 ATCGATGGGCGTGCCTGTGCCTGCAGCTCCTGGCCTTATAG ATCGATGGGCGTGCCTGTGCCTGCTGCTCCTGGCCTTATAG < 41bp 0.898129229076381 0.67463773287111 0.5964181 0.23386434 prediction 0.446982992410543 Functional Loss - SMAP1 ENSG00000112305 CDS Human protein_coding chr6:71567712 chr6:71567716 synonymous SNV . 0 25 hm5C_associated_SNPs_79411 0 0 1 0 1 SMAP1 chr6:71567625 3'AG 71567625 Downstream 92bp
chr9 15461794 15461794 1 + C T rs373666590 15461792 + 15461772 15461812 41 ATTGGCTTGGAGATGACAAGCACGAGTTTCTGGTATGTCTA ATTGGCTTGGAGATGACAAGCATGAGTTTCTGGTATGTCTA < 41bp 0.723490023059656 0.478437319234142 0.3256483 0.28643882 prediction 0.446980046119313 Functional Loss - SNAPC3 ENSG00000164975 UTR3 Human protein_coding chr9:15461792 chr9:15461794 . . 0 23 hm5C_associated_SNPs_79412 0 0 1 2 1 SNAPC3 chr9:15461803 5'GT 15461803 Upstream 10bp
chr12 57389040 57389040 1 + C T UCEC 57389038 + 57389018 57389058 41 CCTGGCCCCTCGGAGGGGGTCACCGCAGTGCCTACCAGTGA CCTGGCCCCTCGGAGGGGGTCATCGCAGTGCCTACCAGTGA < 41bp 0.72348550516255 0.478322120065885 0.58931154 0.83048594 prediction 0.4469710103251 Functional Loss - GPR182 ENSG00000166856 CDS Human protein_coding chr12:57389038 chr12:57389040 nonsynonymous SNV 0.009 2 23 hm5C_associated_SNPs_79416 0 0 0 0 1 GPR182 chr12:57388978 3'AG 57388978 Downstream 63bp
chr1 210522330 210522330 1 + G A LUAD 210522327 + 210522307 210522347 41 GTGCCAAGGAGCCATGCTGCCCCGATGGGAACTGGCACTTT GTGCCAAGGAGCCATGCTGCCCCAATGGGAACTGGCACTTT < 41bp 0.72978499105614 0.506300496090306 0.32205155 0.41710413 prediction 0.446968989931669 Functional Loss - HHAT ENSG00000054392 CDS Human protein_coding chr1:210522327 chr1:210522330 nonsynonymous SNV 0.612 0 24 hm5C_associated_SNPs_79417 0 0 0 0 2 HHAT chr1:210522277 3'AG 210522277 Downstream 54bp
chr1 210522330 210522330 1 + G A LUAD 210522327 + 210522307 210522347 41 GTGCCAAGGAGCCATGCTGCCCCGATGGGAACTGGCACTTT GTGCCAAGGAGCCATGCTGCCCCAATGGGAACTGGCACTTT < 41bp 0.72978499105614 0.506300496090306 0.32205155 0.41710413 prediction 0.446968989931669 Functional Loss - HHAT ENSG00000054392 CDS Human protein_coding chr1:210522327 chr1:210522330 nonsynonymous SNV 0.612 0 24 hm5C_associated_SNPs_79417 0 0 0 0 2 HHAT chr1:210522410 5'GT 210522410 Upstream 81bp
chr1 203466178 203466178 1 + C T COAD 203466176 + 203466156 203466196 41 ACTACGGCTCCAGGGACACCCTCGTCAAACCCCACGATGAC ACTACGGCTCCAGGGACACCCTTGTCAAACCCCACGATGAC < 41bp 0.723483977035645 0.455080321455369 0.029121995 0.01542291 prediction 0.44696795407129 Functional Loss - OPTC ENSG00000188770 CDS Human protein_coding chr1:203466176 chr1:203466178 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_79418 0 0 0 0 2 OPTC chr1:203466105 3'AG 203466105 Downstream 74bp
chr1 203466178 203466178 1 + C T COAD 203466176 + 203466156 203466196 41 ACTACGGCTCCAGGGACACCCTCGTCAAACCCCACGATGAC ACTACGGCTCCAGGGACACCCTTGTCAAACCCCACGATGAC < 41bp 0.723483977035645 0.455080321455369 0.029121995 0.01542291 prediction 0.44696795407129 Functional Loss - OPTC ENSG00000188770 CDS Human protein_coding chr1:203466176 chr1:203466178 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_79418 0 0 0 0 2 OPTC chr1:203466243 5'GT 203466243 Upstream 66bp
chr2 134024008 134024008 1 + G A rs571465722 134024005 + 134023985 134024025 41 ACTGAACGGGGTAGTGGGAGCCAGGTGCCGAAGGGCTGGGG ACTGAACGGGGTAGTGGGAGCCAAGTGCCGAAGGGCTGGGG < 41bp 0.744888243461318 0.521408082449144 0.92001843 0.82398814 prediction 0.446960322024349 Functional Loss - LOC101928161 ENSG00000226953 ncRNA_exonic Human antisense chr2:134024005 chr2:134024008 . . 0 24 hm5C_associated_SNPs_79420 0 0 0 0 1 LOC101928161 chr2:134024008 5'GT 134024008 Upstream 1bp
chr21 33318448 33318448 1 + G A SKCM 33318445 + 33318425 33318465 41 GCTGCACCTGAACTGCTCGCCAGGAAGAAATACGGCCCCAA GCTGCACCTGAACTGCTCGCCAGAAAGAAATACGGCCCCAA < 41bp 0.768451134004356 0.544972669085099 0.88814336 0.79678965 prediction 0.446956929838515 Functional Loss - HUNK ENSG00000142149 CDS Human protein_coding chr21:33318445 chr21:33318448 synonymous SNV . 0 24 hm5C_associated_SNPs_79423 0 0 0 0 1 HUNK chr21:33318483 5'GT 33318483 Upstream 36bp
chrX 47100265 47100265 1 + C T UCEC 47100263 + 47100243 47100283 41 GGCAACACGTGCTTCATGAACTCGGCCCTGCAGGTTGGGCC GGCAACACGTGCTTCATGAACTTGGCCCTGCAGGTTGGGCC < 41bp 0.723477096529007 0.446287738128036 0.21437013 0.25588316 prediction 0.446954193058015 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47100263 chrX:47100265 nonsynonymous SNV 0.925 4 23 hm5C_associated_SNPs_79424 0 0 1 0 2 USP11 chrX:47100173 3'AG 47100173 Downstream 93bp
chrX 47100265 47100265 1 + C T UCEC 47100263 + 47100243 47100283 41 GGCAACACGTGCTTCATGAACTCGGCCCTGCAGGTTGGGCC GGCAACACGTGCTTCATGAACTTGGCCCTGCAGGTTGGGCC < 41bp 0.723477096529007 0.446287738128036 0.21437013 0.25588316 prediction 0.446954193058015 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47100263 chrX:47100265 nonsynonymous SNV 0.925 4 23 hm5C_associated_SNPs_79424 0 0 1 0 2 USP11 chrX:47100275 5'GT 47100275 Upstream 11bp
chr1 29647207 29647207 1 + G A rs528853967 29647204 + 29647184 29647224 41 GGTTTCCCTGCAGAGCTACACACGGAGTGCGGCCTTCATCG GGTTTCCCTGCAGAGCTACACACAGAGTGCGGCCTTCATCG < 41bp 0.795260408367081 0.571783429912181 0.57883483 0.13132691 prediction 0.446953956909798 Functional Loss - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29647204 chr1:29647207 nonsynonymous SNV 0.900 2 24 hm5C_associated_SNPs_79425 0 0 1 0 1 PTPRU chr1:29647197 3'AG 29647197 Downstream 11bp
chr1 217947838 217947838 1 + C T UCEC 217947836 + 217947816 217947856 41 TACAAGCGCCCGTTCTTTTCCTCGGTCTGAAATTCTACCAC TACAAGCGCCCGTTCTTTTCCTTGGTCTGAAATTCTACCAC < 41bp 0.844814408354731 0.621339600323617 0.28715643 0.23865822 prediction 0.446949616062227 Functional Loss - SPATA17 ENSG00000162814 CDS Human protein_coding chr1:217947836 chr1:217947838 nonsynonymous SNV 0.101 2 23 hm5C_associated_SNPs_79427 0 0 0 0 1 SPATA17 chr1:217947879 5'GT 217947879 Upstream 42bp
chr8 124448740 124448740 1 + C T SKCM 124448737 + 124448717 124448757 41 GTTTCAAGTGGAGGACAGAACTTCATTTATGATCTCGATAC GTTTCAAGTGGAGGACAGAACTTTATTTATGATCTCGATAC < 41bp 0.73647395811794 0.513000196691669 0.2531935 0.17274395 prediction 0.446947522852542 Functional Loss - WDYHV1 ENSG00000156795 CDS Human protein_coding chr8:124448737 chr8:124448740 synonymous SNV . 0 24 hm5C_associated_SNPs_79428 0 0 0 0 1 WDYHV1 chr8:124448693 3'AG 124448693 Downstream 48bp
chr9 91943789 91943789 1 + A T LUAD 91943785 + 91943765 91943805 41 AAGAGAAGTAGTAAAACCAGCTGCAGTGTTATCAAAGGTGA AAGAGAAGTAGTAAAACCAGCTGCTGTGTTATCAAAGGTGA < 41bp 0.723468456299201 0.393230263537425 0.2096138 0.15061241 prediction 0.446936912598402 Functional Loss - SECISBP2 ENSG00000187742 CDS Human protein_coding chr9:91943785 chr9:91943789 synonymous SNV . 0 25 hm5C_associated_SNPs_79431 0 0 1 0 1 SECISBP2 chr9:91943801 5'GT 91943801 Upstream 13bp
chrX 140983139 140983139 1 + G C LUAD 140983135 + 140983115 140983155 41 GAAGGACCTGAAGCATTTTGCGAGGAGTCTGGACTCAGGTC GAAGGACCTGAAGCATTTTGCGAGCAGTCTGGACTCAGGTC < 41bp 0.871083111880031 0.6476147931373 0.91822135 0.84739923 prediction 0.446936637485462 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140983135 chrX:140983139 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_79432 0 0 0 0 2 MAGEC3 chrX:140983055 3'AG 140983055 Downstream 85bp
chrX 140983139 140983139 1 + G C LUAD 140983135 + 140983115 140983155 41 GAAGGACCTGAAGCATTTTGCGAGGAGTCTGGACTCAGGTC GAAGGACCTGAAGCATTTTGCGAGCAGTCTGGACTCAGGTC < 41bp 0.871083111880031 0.6476147931373 0.91822135 0.84739923 prediction 0.446936637485462 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140983135 chrX:140983139 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_79432 0 0 0 0 2 MAGEC3 chrX:140983193 5'GT 140983193 Upstream 55bp
chr4 152198351 152198351 1 + G A CESC 152198348 + 152198328 152198368 41 GGCCCTGCTGGCTGTGCCTTCACGCTGCTCCTTCTGCTGGG GGCCCTGCTGGCTGTGCCTTCACACTGCTCCTTCTGCTGGG < 41bp 0.723467849958733 0.472352263512535 0.7054085 0.27922446 prediction 0.446935699917466 Functional Loss - PRSS48 ENSG00000189099 CDS Human protein_coding chr4:152198348 chr4:152198351 synonymous SNV . 0 24 hm5C_associated_SNPs_79433 0 0 0 0 1 PRSS48 chr4:152198376 5'GT 152198376 Upstream 26bp
chr11 112065435 112065435 1 + G T UCEC 112065433 + 112065413 112065453 41 CTGCACATCCTCATTATGACCTGGATGGAACAGCATACAAT CTGCACATCCTCATTATGACCTTGATGGAACAGCATACAAT < 41bp 0.723467642016986 0.387243017787664 0.41108716 0.26539046 prediction 0.446935284033973 Functional Loss - BCO2 ENSG00000197580 CDS Human protein_coding chr11:112065433 chr11:112065435 synonymous SNV . 0 23 hm5C_associated_SNPs_79434 0 0 0 0 2 BCO2 chr11:112065376 3'AG 112065376 Downstream 60bp
chr11 112065435 112065435 1 + G T UCEC 112065433 + 112065413 112065453 41 CTGCACATCCTCATTATGACCTGGATGGAACAGCATACAAT CTGCACATCCTCATTATGACCTTGATGGAACAGCATACAAT < 41bp 0.723467642016986 0.387243017787664 0.41108716 0.26539046 prediction 0.446935284033973 Functional Loss - BCO2 ENSG00000197580 CDS Human protein_coding chr11:112065433 chr11:112065435 synonymous SNV . 0 23 hm5C_associated_SNPs_79434 0 0 0 0 2 BCO2 chr11:112065478 5'GT 112065478 Upstream 44bp
chr17 56327910 56327910 1 + G T LUAD 56327908 + 56327888 56327928 41 ACTTTGCCCCTGACACCGAGCTGGGGAGTAGCGAGTACTCC ACTTTGCCCCTGACACCGAGCTTGGGAGTAGCGAGTACTCC < 41bp 0.72346550404351 0.366059841752137 0.67932576 0.10484862 prediction 0.446931008087019 Functional Loss - LPO ENSG00000167419 CDS Human protein_coding chr17:56327908 chr17:56327910 synonymous SNV . 0 23 hm5C_associated_SNPs_79435 0 0 0 0 1 LPO chr17:56327982 5'GT 56327982 Upstream 73bp
chr4 80496360 80496360 1 + A C rs12507375 80496356 + 80496336 80496376 41 AGATCAAAATATCTGCTTCACTGGAAGGAGTTTTGGATTGC AGATCAAAATATCTGCTTCACTGGCAGGAGTTTTGGATTGC < 41bp 0.723457997023505 0.360027187735773 0.36244726 0.09117156 prediction 0.44691599404701 Functional Loss - LINC00989 ENSG00000250334 ncRNA_exonic Human lincRNA chr4:80496356 chr4:80496360 . . 0 25 hm5C_associated_SNPs_79442 0 0 0 0 1 LINC00989 chr4:80496295 3'AG 80496295 Downstream 66bp
chr19 40480456 40480456 1 + G A rs34344223 40480453 + 40480433 40480473 41 CAGAAGCCAGATGTGATGTACGCGGACATCGGAGGCATGGA CAGAAGCCAGATGTGATGTACGCAGACATCGGAGGCATGGA < 41bp 0.787417061076799 0.563959127951517 0.35428342 0.24665281 prediction 0.446915866250564 Functional Loss - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40480453 chr19:40480456 synonymous SNV . 0 24 hm5C_associated_SNPs_79443 0 0 1 0 2 PSMC4 chr19:40480431 3'AG 40480431 Downstream 26bp
chr19 40480456 40480456 1 + G A rs34344223 40480453 + 40480433 40480473 41 CAGAAGCCAGATGTGATGTACGCGGACATCGGAGGCATGGA CAGAAGCCAGATGTGATGTACGCAGACATCGGAGGCATGGA < 41bp 0.787417061076799 0.563959127951517 0.35428342 0.24665281 prediction 0.446915866250564 Functional Loss - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40480453 chr19:40480456 synonymous SNV . 0 24 hm5C_associated_SNPs_79443 0 0 1 0 2 PSMC4 chr19:40480540 5'GT 40480540 Upstream 85bp
chr9 131392631 131392631 1 + G A UCEC 131392628 + 131392608 131392648 41 TGGTGGAAGAGTCGGGGACCCTCGAATCCCAGCTTGAAGCT TGGTGGAAGAGTCGGGGACCCTCAAATCCCAGCTTGAAGCT < 41bp 0.729555829944389 0.506107761379424 0.91444695 0.89647686 prediction 0.44689613712993 Functional Loss - SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131392628 chr9:131392631 nonsynonymous SNV 0.755 4 24 hm5C_associated_SNPs_79446 0 0 1 0 2 SPTAN1 chr9:131392600 3'AG 131392600 Downstream 32bp
chr9 131392631 131392631 1 + G A UCEC 131392628 + 131392608 131392648 41 TGGTGGAAGAGTCGGGGACCCTCGAATCCCAGCTTGAAGCT TGGTGGAAGAGTCGGGGACCCTCAAATCCCAGCTTGAAGCT < 41bp 0.729555829944389 0.506107761379424 0.91444695 0.89647686 prediction 0.44689613712993 Functional Loss - SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131392628 chr9:131392631 nonsynonymous SNV 0.755 4 24 hm5C_associated_SNPs_79446 0 0 1 0 2 SPTAN1 chr9:131392654 5'GT 131392654 Upstream 24bp
chr2 231157442 231157442 1 + G A SKCM 231157439 + 231157419 231157459 41 TGAAATCAAAGGAGGCCATGCAAGATCAAAGAACTGGAGGC TGAAATCAAAGGAGGCCATGCAAAATCAAAGAACTGGAGGC < 41bp 0.793300793125237 0.569865483073832 0.25832346 0.1272862 prediction 0.446870620102812 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231157439 chr2:231157442 nonsynonymous SNV 0.007 2 24 hm5C_associated_SNPs_79449 0 0 0 0 2 SP140 chr2:231157361 3'AG 231157361 Downstream 82bp
chr2 231157442 231157442 1 + G A SKCM 231157439 + 231157419 231157459 41 TGAAATCAAAGGAGGCCATGCAAGATCAAAGAACTGGAGGC TGAAATCAAAGGAGGCCATGCAAAATCAAAGAACTGGAGGC < 41bp 0.793300793125237 0.569865483073832 0.25832346 0.1272862 prediction 0.446870620102812 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231157439 chr2:231157442 nonsynonymous SNV 0.007 2 24 hm5C_associated_SNPs_79449 0 0 0 0 2 SP140 chr2:231157503 5'GT 231157503 Upstream 62bp
chr12 68043673 68043673 1 + C T GBM 68043671 + 68043651 68043691 41 GTGGGGACTGGCCCGCCCTCCCCCATCGCCCTGCCGCCTCT GTGGGGACTGGCCCGCCCTCCCTCATCGCCCTGCCGCCTCT < 41bp 0.838683207291278 0.615256244399771 0.32346612 0.1772838 prediction 0.446853925783014 Functional Loss - DYRK2 ENSG00000127334 CDS Human protein_coding chr12:68043671 chr12:68043673 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_79452 0 0 1 0 2 DYRK2 chr12:68043577 3'AG 68043577 Downstream 97bp
chr12 68043673 68043673 1 + C T GBM 68043671 + 68043651 68043691 41 GTGGGGACTGGCCCGCCCTCCCCCATCGCCCTGCCGCCTCT GTGGGGACTGGCCCGCCCTCCCTCATCGCCCTGCCGCCTCT < 41bp 0.838683207291278 0.615256244399771 0.32346612 0.1772838 prediction 0.446853925783014 Functional Loss - DYRK2 ENSG00000127334 CDS Human protein_coding chr12:68043671 chr12:68043673 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_79452 0 0 1 0 2 DYRK2 chr12:68043725 5'GT 68043725 Upstream 53bp
chr9 35809218 35809218 1 + G A LIHC 35809215 + 35809195 35809235 41 ATGAGCTAGGATGCTTCCAGCTAGAGCTTCGGGGGGATGTG ATGAGCTAGGATGCTTCCAGCTAAAGCTTCGGGGGGATGTG < 41bp 0.786176708696791 0.562752727360622 0.16384056 0.06747776 prediction 0.446847962672337 Functional Loss - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35809215 chr9:35809218 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_79454 0 0 0 0 2 NPR2 chr9:35809153 3'AG 35809153 Downstream 66bp
chr9 35809218 35809218 1 + G A LIHC 35809215 + 35809195 35809235 41 ATGAGCTAGGATGCTTCCAGCTAGAGCTTCGGGGGGATGTG ATGAGCTAGGATGCTTCCAGCTAAAGCTTCGGGGGGATGTG < 41bp 0.786176708696791 0.562752727360622 0.16384056 0.06747776 prediction 0.446847962672337 Functional Loss - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35809215 chr9:35809218 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_79454 0 0 0 0 2 NPR2 chr9:35809244 5'GT 35809244 Upstream 27bp
chr2 218940463 218940463 1 + G A SKCM 218940460 + 218940440 218940480 41 GTGTCCCTGCAGGACGAGATCAAGGTGAGAACAGTTGAGCT GTGTCCCTGCAGGACGAGATCAAAGTGAGAACAGTTGAGCT < 41bp 0.794177837023406 0.570758709994294 0.91873753 0.89427584 prediction 0.446838254058225 Functional Loss - RUFY4 ENSG00000188282 CDS Human protein_coding chr2:218940460 chr2:218940463 synonymous SNV . 0 24 hm5C_associated_SNPs_79456 0 0 0 0 1 RUFY4 chr2:218940463 5'GT 218940463 Upstream 1bp
chr4 177243342 177243342 1 + T C LIHC 177243341 + 177243321 177243361 41 AAAAAATGTAGAAGATTTCACTGGACCTAGAGAAAGAAGTG AAAAAATGTAGAAGATTTCACCGGACCTAGAGAAAGAAGTG < 41bp 0.743072341990257 0.51966044994806 0.5003677 0.5668267 prediction 0.446823784084393 Functional Loss - SPCS3 ENSG00000129128 CDS Human protein_coding chr4:177243341 chr4:177243342 synonymous SNV . 0 22 hm5C_associated_SNPs_79463 0 0 1 0 1 SPCS3 chr4:177243321 3'AG 177243321 Downstream 22bp
chr1 152856967 152856967 1 + G T LUSC 152856965 + 152856945 152856985 41 ATCAATGCTGCCCACCACAGCAGAACCAGTGCTGCCAGTCA ATCAATGCTGCCCACCACAGCATAACCAGTGCTGCCAGTCA < 41bp 0.723410026520126 0.385306289895988 0.42651272 0.01963669 prediction 0.446820053040252 Functional Loss - SMCP ENSG00000163206 CDS Human protein_coding chr1:152856965 chr1:152856967 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_79465 0 0 0 0 1 SMCP chr1:152856879 3'AG 152856879 Downstream 89bp
chr4 79503384 79503384 1 + G A LIHC 79503381 + 79503361 79503401 41 TCTGGCCACTTTGAGCATCTCATGGTGGCCCTAGTGACTCC TCTGGCCACTTTGAGCATCTCATAGTGGCCCTAGTGACTCC < 41bp 0.785146431041346 0.561738896883757 0.79931426 0.3445535 prediction 0.446815068315178 Functional Loss - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79503381 chr4:79503384 nonsynonymous SNV 0.977 1 24 hm5C_associated_SNPs_79466 0 0 0 0 2 ANXA3 chr4:79503331 3'AG 79503331 Downstream 54bp
chr4 79503384 79503384 1 + G A LIHC 79503381 + 79503361 79503401 41 TCTGGCCACTTTGAGCATCTCATGGTGGCCCTAGTGACTCC TCTGGCCACTTTGAGCATCTCATAGTGGCCCTAGTGACTCC < 41bp 0.785146431041346 0.561738896883757 0.79931426 0.3445535 prediction 0.446815068315178 Functional Loss - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79503381 chr4:79503384 nonsynonymous SNV 0.977 1 24 hm5C_associated_SNPs_79466 0 0 0 0 2 ANXA3 chr4:79503444 5'GT 79503444 Upstream 61bp
chr5 55195875 55195875 1 + G T COAD 55195872 + 55195852 55195892 41 CTTGAACTGCATCTGGGAGGCGAGAGCTTTTGGGTGTCTAT CTTGAACTGCATCTGGGAGGCGATAGCTTTTGGGTGTCTAT < 41bp 0.723407107941043 0.330519302861482 0.28065485 0.06255618 prediction 0.446814215882086 Functional Loss - IL31RA ENSG00000164509 CDS Human protein_coding chr5:55195872 chr5:55195875 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_79467 0 0 0 0 1 IL31RA chr5:55195960 5'GT 55195960 Upstream 86bp
chr1 238090073 238090073 1 + C T UCEC 238090071 + 238090051 238090091 41 TGTTCAAGCTCAGTCGCCCCCGCCAGCCTGTTCACCGTGTT TGTTCAAGCTCAGTCGCCCCCGTCAGCCTGTTCACCGTGTT < 41bp 0.723403857316144 0.48689062399398 0.1575436 0.10277262 prediction 0.446807714632288 Functional Loss - LOC100130331 ENSG00000237250 ncRNA_exonic Human antisense chr1:238090071 chr1:238090073 . . 0 23 hm5C_associated_SNPs_79470 0 0 0 0 1 LOC100130331 chr1:238090049 3'AG 238090049 Downstream 25bp
chr19 17628609 17628609 1 + C T UCEC 17628607 + 17628587 17628627 41 ACTACCTGTCCTGAATGCAGCACGAACTGTCATCTTTGTGG ACTACCTGTCCTGAATGCAGCATGAACTGTCATCTTTGTGG < 41bp 0.723402847353438 0.44865872998595 0.041218698 0.041342944 prediction 0.446805694706876 Functional Loss - PGLS ENSG00000130313 CDS Human protein_coding chr19:17628607 chr19:17628609 stopgain 0.937 1 23 hm5C_associated_SNPs_79471 0 0 1 0 2 PGLS chr19:17628519 3'AG 17628519 Downstream 91bp
chr19 17628609 17628609 1 + C T UCEC 17628607 + 17628587 17628627 41 ACTACCTGTCCTGAATGCAGCACGAACTGTCATCTTTGTGG ACTACCTGTCCTGAATGCAGCATGAACTGTCATCTTTGTGG < 41bp 0.723402847353438 0.44865872998595 0.041218698 0.041342944 prediction 0.446805694706876 Functional Loss - PGLS ENSG00000130313 CDS Human protein_coding chr19:17628607 chr19:17628609 stopgain 0.937 1 23 hm5C_associated_SNPs_79471 0 0 1 0 2 PGLS chr19:17628659 5'GT 17628659 Upstream 51bp
chr3 129269642 129269642 1 + C T UCEC 129269640 + 129269620 129269660 41 GAGAGTAAGAGTTCAAAACCCACGGCCAGCAAGGTAGGTGC GAGAGTAAGAGTTCAAAACCCATGGCCAGCAAGGTAGGTGC < 41bp 0.803179961951749 0.57977824939542 0.3814023 0.23556983 prediction 0.446803425112659 Functional Loss - H1FOO ENSG00000178804 CDS Human protein_coding chr3:129269640 chr3:129269642 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_79472 0 0 0 0 2 H1FOO chr3:129269588 3'AG 129269588 Downstream 55bp
chr3 129269642 129269642 1 + C T UCEC 129269640 + 129269620 129269660 41 GAGAGTAAGAGTTCAAAACCCACGGCCAGCAAGGTAGGTGC GAGAGTAAGAGTTCAAAACCCATGGCCAGCAAGGTAGGTGC < 41bp 0.803179961951749 0.57977824939542 0.3814023 0.23556983 prediction 0.446803425112659 Functional Loss - H1FOO ENSG00000178804 CDS Human protein_coding chr3:129269640 chr3:129269642 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_79472 0 0 0 0 2 H1FOO chr3:129269652 5'GT 129269652 Upstream 11bp
chr11 65156866 65156866 1 + G A rs76814425 65156863 + 65156843 65156883 41 CTGGTATACCTAGCGGATGACACGGTGGTGCCCCTGGCTGT CTGGTATACCTAGCGGATGACACAGTGGTGCCCCTGGCTGT < 41bp 0.801056034366782 0.577655048681992 0.315267 0.19598457 prediction 0.446801971369579 Functional Loss - FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65156863 chr11:65156866 synonymous SNV . 0 24 hm5C_associated_SNPs_79473 0 0 0 0 1 FRMD8 chr11:65156832 3'AG 65156832 Downstream 35bp
chr12 15131004 15131004 1 + C T STAD 15131002 + 15130982 15131022 41 AAACCAGGGTCCTACCACCCCACGCAAAGGCCCTCCCAAGT AAACCAGGGTCCTACCACCCCATGCAAAGGCCCTCCCAAGT < 41bp 0.723397340617687 0.446852348581984 0.040439963 0.058949053 prediction 0.446794681235374 Functional Loss - PDE6H ENSG00000139053 CDS Human protein_coding chr12:15131002 chr12:15131004 nonsynonymous SNV 0.987 3 23 hm5C_associated_SNPs_79474 0 0 0 0 1 PDE6H chr12:15130906 3'AG 15130906 Downstream 99bp
chr8 42174363 42174363 1 + G T LUAD 42174360 + 42174340 42174380 41 AGGAGGACCAGGAGCTGCTGCAGGAAGCGGGCCTGGCGTTG AGGAGGACCAGGAGCTGCTGCAGTAAGCGGGCCTGGCGTTG < 41bp 0.926141102486028 0.702745347394862 0.83659434 0.48063815 prediction 0.446791510182331 Functional Loss - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42174360 chr8:42174363 stopgain 0.937 1 24 hm5C_associated_SNPs_79475 0 0 1 0 1 IKBKB chr8:42174422 5'GT 42174422 Upstream 60bp
chr1 151236495 151236495 1 + C T COAD 151236493 + 151236473 151236513 41 TCACCTTCTGCACGGGCATCCGCGTGGCCCATGTGAGTCCT TCACCTTCTGCACGGGCATCCGTGTGGCCCATGTGAGTCCT < 41bp 0.838329578257641 0.614938784150952 0.36020476 0.21043766 prediction 0.44678158821338 Functional Loss - PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151236493 chr1:151236495 synonymous SNV . 0 23 hm5C_associated_SNPs_79476 0 0 1 0 1 PSMD4 chr1:151236504 5'GT 151236504 Upstream 10bp
chr15 41020937 41020937 1 + G A CESC 41020934 + 41020914 41020954 41 GTCTCTCTGGCAGTGATGTCCTGGATAATGTAGCATATGCT GTCTCTCTGGCAGTGATGTCCTGAATAATGTAGCATATGCT < 41bp 0.776553322384348 0.553163503289397 0.49777707 0.28755283 prediction 0.446779638189901 Functional Loss - RAD51 ENSG00000051180 CDS Human protein_coding chr15:41020934 chr15:41020937 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_79477 0 0 0 2 2 RAD51 chr15:41020909 3'AG 41020909 Downstream 29bp
chr15 41020937 41020937 1 + G A CESC 41020934 + 41020914 41020954 41 GTCTCTCTGGCAGTGATGTCCTGGATAATGTAGCATATGCT GTCTCTCTGGCAGTGATGTCCTGAATAATGTAGCATATGCT < 41bp 0.776553322384348 0.553163503289397 0.49777707 0.28755283 prediction 0.446779638189901 Functional Loss - RAD51 ENSG00000051180 CDS Human protein_coding chr15:41020934 chr15:41020937 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_79477 0 0 0 2 2 RAD51 chr15:41021022 5'GT 41021022 Upstream 86bp
chr19 46262206 46262206 1 + C T rs186063381 46262204 + 46262184 46262224 41 CAGGCCACCCAAGTGAGATCCTCGGGCTCAGCCCTAGCCTT CAGGCCACCCAAGTGAGATCCTTGGGCTCAGCCCTAGCCTT < 41bp 0.836176357473581 0.61278978523895 0.8787274 0.80796266 prediction 0.446773144469262 Functional Loss - BHMG1 ENSG00000237452 CDS Human protein_coding chr19:46262204 chr19:46262206 synonymous SNV . 0 23 hm5C_associated_SNPs_79479 0 0 0 0 2 BHMG1 chr19:46262136 3'AG 46262136 Downstream 71bp
chr19 46262206 46262206 1 + C T rs186063381 46262204 + 46262184 46262224 41 CAGGCCACCCAAGTGAGATCCTCGGGCTCAGCCCTAGCCTT CAGGCCACCCAAGTGAGATCCTTGGGCTCAGCCCTAGCCTT < 41bp 0.836176357473581 0.61278978523895 0.8787274 0.80796266 prediction 0.446773144469262 Functional Loss - BHMG1 ENSG00000237452 CDS Human protein_coding chr19:46262204 chr19:46262206 synonymous SNV . 0 23 hm5C_associated_SNPs_79479 0 0 0 0 2 BHMG1 chr19:46262291 5'GT 46262291 Upstream 86bp
chr6 96986556 96986556 1 + A C COAD 96986555 + 96986535 96986575 41 AAGATGCTGCCATATTGCTTCAGCAGGTGATGAGGGCATTC AAGATGCTGCCATATTGCTTCCGCAGGTGATGAGGGCATTC < 41bp 0.791328855805945 0.56794643075592 0.21343762 0.16370338 prediction 0.446764850100049 Functional Loss - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96986555 chr6:96986556 nonsynonymous SNV 0.984 1 22 hm5C_associated_SNPs_79482 0 0 1 2 1 UFL1 chr6:96986507 3'AG 96986507 Downstream 50bp
chr2 27278095 27278095 1 + C T COAD 27278093 + 27278073 27278113 41 AGCTGATTCCCATGTTGAACCCCGATGGTGTGGTCCGGGGA AGCTGATTCCCATGTTGAACCCTGATGGTGTGGTCCGGGGA < 41bp 0.723380166994076 0.442962608291605 0.31566244 0.14654034 prediction 0.446760333988151 Functional Loss - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27278093 chr2:27278095 synonymous SNV . 0 23 hm5C_associated_SNPs_79486 0 0 1 0 1 AGBL5 chr2:27278121 5'GT 27278121 Upstream 27bp
chr19 47673155 47673155 1 + G A rs145737324 47673152 + 47673132 47673172 41 GCAAAGGCTGCTCTGAAGCGCACGACCTCCGACTACTTTCT GCAAAGGCTGCTCTGAAGCGCACAACCTCCGACTACTTTCT < 41bp 0.786016034022168 0.562636106761226 0.10877618 0.06927186 prediction 0.446759854521884 Functional Loss - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47673152 chr19:47673155 synonymous SNV . 0 24 hm5C_associated_SNPs_79487 0 0 1 0 2 SAE1 chr19:47673075 3'AG 47673075 Downstream 81bp
chr19 47673155 47673155 1 + G A rs145737324 47673152 + 47673132 47673172 41 GCAAAGGCTGCTCTGAAGCGCACGACCTCCGACTACTTTCT GCAAAGGCTGCTCTGAAGCGCACAACCTCCGACTACTTTCT < 41bp 0.786016034022168 0.562636106761226 0.10877618 0.06927186 prediction 0.446759854521884 Functional Loss - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47673152 chr19:47673155 synonymous SNV . 0 24 hm5C_associated_SNPs_79487 0 0 1 0 2 SAE1 chr19:47673180 5'GT 47673180 Upstream 26bp
chr7 1024668 1024668 1 + G A SKCM 1024665 + 1024645 1024685 41 CTGCACAGCCTGGGCGTGGGCCGGGAGCCGGTGGCTGACAA CTGCACAGCCTGGGCGTGGGCCGAGAGCCGGTGGCTGACAA < 41bp 0.788398401003296 0.56502008373138 0.9154806 0.6095462 prediction 0.446756634543832 Functional Loss - CYP2W1 ENSG00000073067 CDS Human protein_coding chr7:1024665 chr7:1024668 synonymous SNV . 0 24 hm5C_associated_SNPs_79488 0 0 1 0 2 CYP2W1 chr7:1024586 3'AG 1024586 Downstream 83bp
chr7 1024668 1024668 1 + G A SKCM 1024665 + 1024645 1024685 41 CTGCACAGCCTGGGCGTGGGCCGGGAGCCGGTGGCTGACAA CTGCACAGCCTGGGCGTGGGCCGAGAGCCGGTGGCTGACAA < 41bp 0.788398401003296 0.56502008373138 0.9154806 0.6095462 prediction 0.446756634543832 Functional Loss - CYP2W1 ENSG00000073067 CDS Human protein_coding chr7:1024665 chr7:1024668 synonymous SNV . 0 24 hm5C_associated_SNPs_79488 0 0 1 0 2 CYP2W1 chr7:1024735 5'GT 1024735 Upstream 68bp
chr14 90451011 90451011 1 + G A UCEC 90451008 + 90450988 90451028 41 GGATAGATGTCATTCACAAGCACGATCTCTCTGAAACAAAG GGATAGATGTCATTCACAAGCACAATCTCTCTGAAACAAAG < 41bp 0.72337553858701 0.493203098993247 0.096884936 0.07775304 prediction 0.446751077174019 Functional Loss - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90451008 chr14:90451011 nonsynonymous SNV 0.742 3 24 hm5C_associated_SNPs_79491 0 0 1 0 1 TDP1 chr14:90451027 5'GT 90451027 Upstream 17bp
chr16 69951744 69951744 1 + C T SKCM 69951742 + 69951722 69951762 41 GGCAGTCGCAGCGGAATCAGCTCCAGGGGGCCATGCAGCAC GGCAGTCGCAGCGGAATCAGCTTCAGGGGGCCATGCAGCAC < 41bp 0.863091450009554 0.639719705494168 0.8018236 0.2173726 prediction 0.446743489030772 Functional Loss - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69951742 chr16:69951744 synonymous SNV . 0 23 hm5C_associated_SNPs_79492 0 0 1 0 1 WWP2 chr16:69951786 5'GT 69951786 Upstream 43bp
chr13 28854571 28854571 1 + A C HNSC 28854570 + 28854550 28854590 41 TATTTGTTGACTGACCAAAACAGGATGCGAAGTGTAAATGA TATTTGTTGACTGACCAAAACCGGATGCGAAGTGTAAATGA < 41bp 0.788279153772681 0.564907981476572 0.7580097 0.7852665 prediction 0.446742344592219 Functional Loss - PAN3 ENSG00000152520 CDS Human protein_coding chr13:28854570 chr13:28854571 synonymous SNV . 0 22 hm5C_associated_SNPs_79493 0 0 1 0 1 PAN3 chr13:28854549 3'AG 28854549 Downstream 23bp
chr15 71256165 71256165 1 + C T BLCA 71256163 + 71256143 71256183 41 CTTGCTGACTCTTCTTCCCTCTCGGACATCACCTTTGATGG CTTGCTGACTCTTCTTCCCTCTTGGACATCACCTTTGATGG < 41bp 0.72337068635682 0.42789550909885 0.29463685 0.08560848 prediction 0.446741372713641 Functional Loss - LRRC49 ENSG00000137821 CDS Human protein_coding chr15:71256163 chr15:71256165 nonsynonymous SNV 0.959 2 23 hm5C_associated_SNPs_79494 0 0 0 0 1 LRRC49 chr15:71256124 3'AG 71256124 Downstream 42bp
chr16 30676984 30676984 1 + G A COAD 30676981 + 30676961 30677001 41 CACGAACCCTGAGCTGCCACCACGACTGGGGCCGGTGCCGA CACGAACCCTGAGCTGCCACCACAACTGGGGCCGGTGCCGA < 41bp 0.770770221743145 0.547402342206887 0.045300633 0.07735172 prediction 0.446735759072515 Functional Loss - FBRS ENSG00000156860 CDS Human protein_coding chr16:30676981 chr16:30676984 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_79499 0 0 1 0 2 FBRS chr16:30676959 3'AG 30676959 Downstream 26bp
chr16 30676984 30676984 1 + G A COAD 30676981 + 30676961 30677001 41 CACGAACCCTGAGCTGCCACCACGACTGGGGCCGGTGCCGA CACGAACCCTGAGCTGCCACCACAACTGGGGCCGGTGCCGA < 41bp 0.770770221743145 0.547402342206887 0.045300633 0.07735172 prediction 0.446735759072515 Functional Loss - FBRS ENSG00000156860 CDS Human protein_coding chr16:30676981 chr16:30676984 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_79499 0 0 1 0 2 FBRS chr16:30677027 5'GT 30677027 Upstream 44bp
chr19 42396123 42396123 1 + G T BRCA 42396120 + 42396100 42396140 41 GCTGTCTGCATGCCGACATGCTGGGCTCACTGGGCCCCAAG GCTGTCTGCATGCCGACATGCTGTGCTCACTGGGCCCCAAG < 41bp 0.723366503797732 0.32704643904043 0.66061234 0.1183207 prediction 0.446733007595465 Functional Loss - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42396120 chr19:42396123 nonsynonymous SNV 0.951 1 24 hm5C_associated_SNPs_79501 0 0 1 0 2 ARHGEF1 chr19:42396096 3'AG 42396096 Downstream 28bp
chr19 42396123 42396123 1 + G T BRCA 42396120 + 42396100 42396140 41 GCTGTCTGCATGCCGACATGCTGGGCTCACTGGGCCCCAAG GCTGTCTGCATGCCGACATGCTGTGCTCACTGGGCCCCAAG < 41bp 0.723366503797732 0.32704643904043 0.66061234 0.1183207 prediction 0.446733007595465 Functional Loss - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42396120 chr19:42396123 nonsynonymous SNV 0.951 1 24 hm5C_associated_SNPs_79501 0 0 1 0 2 ARHGEF1 chr19:42396194 5'GT 42396194 Upstream 72bp
chr4 39109240 39109240 1 + G T LUAD 39109238 + 39109218 39109258 41 GCCGTAGGAGGACATGATGGCTGGAGCTATCTGAACACAGT GCCGTAGGAGGACATGATGGCTTGAGCTATCTGAACACAGT < 41bp 0.89786331504991 0.674497240187921 0.5490146 0.29421657 prediction 0.446732149723979 Functional Loss - KLHL5 ENSG00000109790 CDS Human protein_coding chr4:39109238 chr4:39109240 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_79502 0 0 1 0 1 KLHL5 chr4:39109189 3'AG 39109189 Downstream 52bp
chr9 34657330 34657330 1 + G A COAD 34657327 + 34657307 34657347 41 ACAGTCCTAGGAGCTGATAGCCAGAGGTAGGACGTGAGGGA ACAGTCCTAGGAGCTGATAGCCAAAGGTAGGACGTGAGGGA < 41bp 0.723365523800258 0.473747591140316 0.93943965 0.92669153 prediction 0.446731047600517 Functional Loss - IL11RA ENSG00000137070 CDS Human protein_coding chr9:34657327 chr9:34657330 synonymous SNV . 0 24 hm5C_associated_SNPs_79503 0 0 0 0 3 IL11RA chr9:34657281 3'AG 34657281 Downstream 50bp
chr9 34657330 34657330 1 + G A COAD 34657327 + 34657307 34657347 41 ACAGTCCTAGGAGCTGATAGCCAGAGGTAGGACGTGAGGGA ACAGTCCTAGGAGCTGATAGCCAAAGGTAGGACGTGAGGGA < 41bp 0.723365523800258 0.473747591140316 0.93943965 0.92669153 prediction 0.446731047600517 Functional Loss - IL11RA ENSG00000137070 CDS Human protein_coding chr9:34657327 chr9:34657330 synonymous SNV . 0 24 hm5C_associated_SNPs_79503 0 0 0 0 3 IL11RA chr9:34657300 3'AG 34657300 Downstream 31bp
chr9 34657330 34657330 1 + G A COAD 34657327 + 34657307 34657347 41 ACAGTCCTAGGAGCTGATAGCCAGAGGTAGGACGTGAGGGA ACAGTCCTAGGAGCTGATAGCCAAAGGTAGGACGTGAGGGA < 41bp 0.723365523800258 0.473747591140316 0.93943965 0.92669153 prediction 0.446731047600517 Functional Loss - IL11RA ENSG00000137070 CDS Human protein_coding chr9:34657327 chr9:34657330 synonymous SNV . 0 24 hm5C_associated_SNPs_79503 0 0 0 0 3 IL11RA chr9:34657332 5'GT 34657332 Upstream 3bp
chr17 72350362 72350362 1 + G A rs72852235 72350359 + 72350339 72350379 41 GTGAAGGCCGCCCGGCGGCGCTCGCGGGCCCTGGGAACCGA GTGAAGGCCGCCCGGCGGCGCTCACGGGCCCTGGGAACCGA < 41bp 0.723363588426374 0.47509634085988 0.39574915 0.14230767 prediction 0.446727176852747 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72350359 chr17:72350362 synonymous SNV . 0 24 hm5C_associated_SNPs_79506 0 0 0 0 1 KIF19 chr17:72350301 3'AG 72350301 Downstream 62bp
chr2 26410198 26410198 1 + C T CESC 26410196 + 26410176 26410216 41 GACTGCAAGGTGGGCGAGTCCTCTAGCCGCCCAGCCCCCGG GACTGCAAGGTGGGCGAGTCCTTTAGCCGCCCAGCCCCCGG < 41bp 0.833997852888771 0.610634714814418 0.88618755 0.1100027 prediction 0.446726276148706 Functional Loss - GAREM2 ENSG00000157833 CDS Human protein_coding chr2:26410196 chr2:26410198 nonsynonymous SNV 0.877 1 23 hm5C_associated_SNPs_79508 0 0 1 0 1 GAREM2 chr2:26410100 3'AG 26410100 Downstream 99bp
chr6 32609254 32609254 1 + G T rs1142331 32609251 + 32609231 32609271 41 AATTTGGAGGTTTTGACCCGCAGGGTGCACTGAGAAACATG AATTTGGAGGTTTTGACCCGCAGTGTGCACTGAGAAACATG < 41bp 0.723362674237042 0.320895819864436 0.83783555 0.4135527 prediction 0.446725348474083 Functional Loss - HLA-DQA1 ENSG00000196735 CDS Human protein_coding chr6:32609251 chr6:32609254 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_79509 0 0 0 3 1 HLA-DQA1 chr6:32609335 5'GT 32609335 Upstream 82bp
chr20 9498814 9498814 1 + G A LUAD 9498811 + 9498791 9498831 41 GATCCGCAGAAGACGGTCACCATGATCCTGTCTGCGGTCCA GATCCGCAGAAGACGGTCACCATAATCCTGTCTGCGGTCCA < 41bp 0.7493775751129 0.526017022641838 0.19253272 0.24808806 prediction 0.446721104942124 Functional Loss - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9498811 chr20:9498814 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_79510 0 0 0 0 1 LAMP5 chr20:9498875 5'GT 9498875 Upstream 62bp
chr14 103998985 103998985 1 + C T UCEC 103998983 + 103998963 103999003 41 GCACCCACGGGTCACCTGCACACGGTGGAGTTCCACCAGCA GCACCCACGGGTCACCTGCACATGGTGGAGTTCCACCAGCA < 41bp 0.802558212709795 0.579203882722033 0.6538817 0.81872773 prediction 0.446708659975524 Functional Loss - TRMT61A ENSG00000166166 CDS Human protein_coding chr14:103998983 chr14:103998985 nonsynonymous SNV 0.949 4 23 hm5C_associated_SNPs_79513 0 0 1 0 1 TRMT61A chr14:103998919 3'AG 103998919 Downstream 67bp
chr10 13166055 13166055 1 + G A BRCA 13166052 + 13166032 13166072 41 CATCTCTGTTTAAGGAGCTTCAAGAGGCTCATACAAAACTC CATCTCTGTTTAAGGAGCTTCAAAAGGCTCATACAAAACTC < 41bp 0.762256360706685 0.538903232981376 0.7422712 0.27400053 prediction 0.44670625545062 Functional Loss - OPTN ENSG00000123240 CDS Human protein_coding chr10:13166052 chr10:13166055 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_79514 0 0 0 0 2 OPTN chr10:13165995 3'AG 13165995 Downstream 61bp
chr10 13166055 13166055 1 + G A BRCA 13166052 + 13166032 13166072 41 CATCTCTGTTTAAGGAGCTTCAAGAGGCTCATACAAAACTC CATCTCTGTTTAAGGAGCTTCAAAAGGCTCATACAAAACTC < 41bp 0.762256360706685 0.538903232981376 0.7422712 0.27400053 prediction 0.44670625545062 Functional Loss - OPTN ENSG00000123240 CDS Human protein_coding chr10:13166052 chr10:13166055 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_79514 0 0 0 0 2 OPTN chr10:13166110 5'GT 13166110 Upstream 56bp
chr2 103380843 103380843 1 + C T CESC 103380840 + 103380820 103380860 41 GCTTACCTGTCTCCGTACCCCTTCATGAGAGGCGAGCACAA GCTTACCTGTCTCCGTACCCCTTTATGAGAGGCGAGCACAA < 41bp 0.723347107928909 0.488341928257201 0.24114001 0.023042768 prediction 0.446694215857819 Functional Loss - TMEM182 ENSG00000170417 CDS Human protein_coding chr2:103380840 chr2:103380843 synonymous SNV . 0 24 hm5C_associated_SNPs_79518 0 0 1 0 2 TMEM182 chr2:103380788 3'AG 103380788 Downstream 56bp
chr2 103380843 103380843 1 + C T CESC 103380840 + 103380820 103380860 41 GCTTACCTGTCTCCGTACCCCTTCATGAGAGGCGAGCACAA GCTTACCTGTCTCCGTACCCCTTTATGAGAGGCGAGCACAA < 41bp 0.723347107928909 0.488341928257201 0.24114001 0.023042768 prediction 0.446694215857819 Functional Loss - TMEM182 ENSG00000170417 CDS Human protein_coding chr2:103380840 chr2:103380843 synonymous SNV . 0 24 hm5C_associated_SNPs_79518 0 0 1 0 2 TMEM182 chr2:103380886 5'GT 103380886 Upstream 44bp
chrX 48371091 48371091 1 + G C CESC 48371087 + 48371067 48371107 41 CCGTACTTCATCCCCCTCAACGGTGACCGCCTCCTTCGCAA CCGTACTTCATCCCCCTCAACGGTCACCGCCTCCTTCGCAA < 41bp 0.723343850309217 0.417102003663071 0.3220833 0.14447409 prediction 0.446687700618434 Functional Loss - PORCN ENSG00000102312 CDS Human protein_coding chrX:48371087 chrX:48371091 nonsynonymous SNV 0.984 2 25 hm5C_associated_SNPs_79519 0 0 0 0 1 PORCN chrX:48371107 5'GT 48371107 Upstream 17bp
chr17 2282773 2282773 1 + G A CESC 2282770 + 2282750 2282790 41 AGGAGATCCTGCGGATTGCCCGGGACCTCGTCCACAAGGTG AGGAGATCCTGCGGATTGCCCGGAACCTCGTCCACAAGGTG < 41bp 0.790652103979036 0.567309759106809 0.88622403 0.7127491 prediction 0.446684689744455 Functional Loss - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2282770 chr17:2282773 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_79522 0 0 0 1 1 SGSM2 chr17:2282726 3'AG 2282726 Downstream 48bp
chr11 279844 279844 1 + C T DLBC 279842 + 279822 279862 41 TTTCCCTTCCAGGGCTCGGGCTCGGCTCCGGGACGCTGCTC TTTCCCTTCCAGGGCTCGGGCTTGGCTCCGGGACGCTGCTC < 41bp 0.785436414853737 0.562094977262499 0.11187807 0.08443916 prediction 0.446682875182476 Functional Loss - NLRP6 ENSG00000174885 CDS Human protein_coding chr11:279842 chr11:279844 synonymous SNV . 0 23 hm5C_associated_SNPs_79525 0 0 0 0 2 NLRP6 chr11:279834 3'AG 279834 Downstream 11bp
chr11 279844 279844 1 + C T DLBC 279842 + 279822 279862 41 TTTCCCTTCCAGGGCTCGGGCTCGGCTCCGGGACGCTGCTC TTTCCCTTCCAGGGCTCGGGCTTGGCTCCGGGACGCTGCTC < 41bp 0.785436414853737 0.562094977262499 0.11187807 0.08443916 prediction 0.446682875182476 Functional Loss - NLRP6 ENSG00000174885 CDS Human protein_coding chr11:279842 chr11:279844 synonymous SNV . 0 23 hm5C_associated_SNPs_79525 0 0 0 0 2 NLRP6 chr11:279872 5'GT 279872 Upstream 29bp
chr11 7083670 7083670 1 + G A LUSC 7083667 + 7083647 7083687 41 ACCTTGGGAACAACGATTTGCAGGATGATGGAGTGAAAATT ACCTTGGGAACAACGATTTGCAGAATGATGGAGTGAAAATT < 41bp 0.746186645731838 0.522845927176931 0.34897614 0.06256014 prediction 0.446681437109814 Functional Loss - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7083667 chr11:7083670 nonsynonymous SNV 0.840 4 24 hm5C_associated_SNPs_79528 0 0 0 0 1 NLRP14 chr11:7083734 5'GT 7083734 Upstream 65bp
chr12 118574060 118574060 1 + G T UCEC 118574057 + 118574037 118574077 41 GGTCCGGGCCCTTGAGCCTGCAAGAAGTGGACGAGCAGCCG GGTCCGGGCCCTTGAGCCTGCAATAAGTGGACGAGCAGCCG < 41bp 0.921951028794774 0.698610968321824 0.728902 0.42919216 prediction 0.4466801209459 Functional Loss - PEBP1 ENSG00000089220 CDS Human protein_coding chr12:118574057 chr12:118574060 stopgain 0.999 1 24 hm5C_associated_SNPs_79529 0 0 1 0 1 PEBP1 chr12:118574149 5'GT 118574149 Upstream 90bp
chr3 111604186 111604186 1 + G A SKCM 111604183 + 111604163 111604203 41 AAGCAGTATTAGCTCCATTTCAGGACGTGATGACCTGATGG AAGCAGTATTAGCTCCATTTCAGAACGTGATGACCTGATGG < 41bp 0.759820868720438 0.536491477466959 0.8787345 0.51149863 prediction 0.446658782506957 Functional Loss - PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111604183 chr3:111604186 nonsynonymous SNV 0.979 4 24 hm5C_associated_SNPs_79531 0 0 1 0 1 PHLDB2 chr3:111604259 5'GT 111604259 Upstream 74bp
chr11 130013326 130013326 1 + G A SKCM 130013323 + 130013303 130013343 41 AGAACCCCACCTACAAATACCTGGAGCAGATGCAGATTTAG AGAACCCCACCTACAAATACCTGAAGCAGATGCAGATTTAG < 41bp 0.74593317992826 0.522605344712247 0.26724404 0.1046609 prediction 0.446655670432028 Functional Loss - APLP2 ENSG00000084234 CDS Human protein_coding chr11:130013323 chr11:130013326 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_79532 0 0 1 0 1 APLP2 chr11:130013242 3'AG 130013242 Downstream 85bp
chr11 64359339 64359339 1 + C T STAD 64359337 + 64359317 64359357 41 CAGCTCTTGGACCCCAATGCCACGGCCACCAGCTGGAGCGA CAGCTCTTGGACCCCAATGCCATGGCCACCAGCTGGAGCGA < 41bp 0.764340960005185 0.541014400721242 0.71660364 0.39553306 prediction 0.446653118567887 Functional Loss - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64359337 chr11:64359339 nonsynonymous SNV 0.825 2 23 hm5C_associated_SNPs_79534 0 0 0 0 1 SLC22A12 chr11:64359430 5'GT 64359430 Upstream 92bp
chr1 161480730 161480730 1 + G A STAD 161480727 + 161480707 161480747 41 GTAGTGGCCTTGATCTACTGCAGGAAAAAGCGGATTTCAGG GTAGTGGCCTTGATCTACTGCAGAAAAAAGCGGATTTCAGG < 41bp 0.784109885620183 0.560786653205708 0.5080596 0.17684653 prediction 0.446646464828951 Functional Loss - FCGR2A ENSG00000143226 CDS Human protein_coding chr1:161480727 chr1:161480730 synonymous SNV . 0 24 hm5C_associated_SNPs_79538 0 0 1 0 1 FCGR2A chr1:161480746 5'GT 161480746 Upstream 17bp
chr16 12145791 12145791 1 + G A rs118191509 12145788 + 12145768 12145808 41 TGAGGAAGATGAGCAGAACTCTGGGGACGTGTTTAAAAAGA TGAGGAAGATGAGCAGAACTCTGAGGACGTGTTTAAAAAGA < 41bp 0.723320669713417 0.494958048501979 0.5453319 0.1468656 prediction 0.446641339426834 Functional Loss - SNX29 ENSG00000048471 CDS Human protein_coding chr16:12145788 chr16:12145791 nonsynonymous SNV 0.583 1 24 hm5C_associated_SNPs_79539 0 0 1 0 1 SNX29 chr16:12145704 3'AG 12145704 Downstream 88bp
chr4 100540230 100540230 1 + G A LUSC 100540227 + 100540207 100540247 41 TGGAGTTTAGCTTGTGGTATCGTGAGTCTAAAACCCGAGTG TGGAGTTTAGCTTGTGGTATCGTAAGTCTAAAACCCGAGTG < 41bp 0.748723650036265 0.525405733276155 0.7395444 0.6007809 prediction 0.446635833520221 Functional Loss - MTTP ENSG00000138823 CDS Human protein_coding chr4:100540227 chr4:100540230 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_79542 0 0 1 0 2 MTTP chr4:100540131 3'AG 100540131 Downstream 100bp
chr4 100540230 100540230 1 + G A LUSC 100540227 + 100540207 100540247 41 TGGAGTTTAGCTTGTGGTATCGTGAGTCTAAAACCCGAGTG TGGAGTTTAGCTTGTGGTATCGTAAGTCTAAAACCCGAGTG < 41bp 0.748723650036265 0.525405733276155 0.7395444 0.6007809 prediction 0.446635833520221 Functional Loss - MTTP ENSG00000138823 CDS Human protein_coding chr4:100540227 chr4:100540230 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_79542 0 0 1 0 2 MTTP chr4:100540255 5'GT 100540255 Upstream 26bp
chr20 33514954 33514954 1 + T C GBM 33514953 + 33514933 33514973 41 CCATGACCTCGGGGACATGTCTACTGTGGCTGACCCATCTG CCATGACCTCGGGGACATGTCCACTGTGGCTGACCCATCTG < 41bp 0.723317910597423 0.474528163141227 0.16791552 0.120669305 prediction 0.446635821194846 Functional Loss - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33514953 chr20:33514954 synonymous SNV . 0 22 hm5C_associated_SNPs_79543 0 0 1 1 1 ACSS2 chr20:33514890 3'AG 33514890 Downstream 65bp
chr18 61558795 61558795 1 + G A SKCM 61558792 + 61558772 61558812 41 CCATGGAGCATCTCGTCCACCATGGCCATGGTCTACATGGG CCATGGAGCATCTCGTCCACCATAGCCATGGTCTACATGGG < 41bp 0.787434002875767 0.564118862061938 0.1712724 0.09242901 prediction 0.446630281627659 Functional Loss - SERPINB2 ENSG00000197632 CDS Human protein_coding chr18:61558792 chr18:61558795 nonsynonymous SNV 0.954 1 24 hm5C_associated_SNPs_79544 0 0 0 0 1 SERPINB2 chr18:61558846 5'GT 61558846 Upstream 52bp
chr19 15769357 15769357 1 + G A ESCA 15769354 + 15769334 15769374 41 ATCACAACCCAGCCGTGTGGCCGGACCCTGAGGTGCGGGCC ATCACAACCCAGCCGTGTGGCCGAACCCTGAGGTGCGGGCC < 41bp 0.723314650174399 0.474135531479113 0.40870818 0.21567401 prediction 0.446629300348798 Functional Loss - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15769354 chr19:15769357 nonsynonymous SNV 0.720 1 24 hm5C_associated_SNPs_79546 0 0 1 0 2 CYP4F3 chr19:15769301 3'AG 15769301 Downstream 57bp
chr19 15769357 15769357 1 + G A ESCA 15769354 + 15769334 15769374 41 ATCACAACCCAGCCGTGTGGCCGGACCCTGAGGTGCGGGCC ATCACAACCCAGCCGTGTGGCCGAACCCTGAGGTGCGGGCC < 41bp 0.723314650174399 0.474135531479113 0.40870818 0.21567401 prediction 0.446629300348798 Functional Loss - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15769354 chr19:15769357 nonsynonymous SNV 0.720 1 24 hm5C_associated_SNPs_79546 0 0 1 0 2 CYP4F3 chr19:15769365 5'GT 15769365 Upstream 9bp
chr8 95709092 95709092 1 + G C HNSC 95709088 + 95709068 95709108 41 CTTGCATTTTAGTATGCAACCGAGGATGGACTTATACACAC CTTGCATTTTAGTATGCAACCGAGCATGGACTTATACACAC < 41bp 0.7233082780552 0.449878455168952 0.57182205 0.15282074 prediction 0.4466165561104 Functional Loss - ESRP1 ENSG00000104413 CDS Human protein_coding chr8:95709088 chr8:95709092 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_79549 0 0 0 0 2 ESRP1 chr8:95709080 3'AG 95709080 Downstream 13bp
chr8 95709092 95709092 1 + G C HNSC 95709088 + 95709068 95709108 41 CTTGCATTTTAGTATGCAACCGAGGATGGACTTATACACAC CTTGCATTTTAGTATGCAACCGAGCATGGACTTATACACAC < 41bp 0.7233082780552 0.449878455168952 0.57182205 0.15282074 prediction 0.4466165561104 Functional Loss - ESRP1 ENSG00000104413 CDS Human protein_coding chr8:95709088 chr8:95709092 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_79549 0 0 0 0 2 ESRP1 chr8:95709189 5'GT 95709189 Upstream 98bp
chr20 61468506 61468506 1 + G T SARC 61468504 + 61468484 61468524 41 GTCCATTGGTCGGCCCGGTCCAGCTGGCCCCCCTGGGCCCC GTCCATTGGTCGGCCCGGTCCATCTGGCCCCCCTGGGCCCC < 41bp 0.723302945056781 0.366603069398762 0.46685067 0.14366135 prediction 0.446605890113562 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61468504 chr20:61468506 nonsynonymous SNV 0.076 4 23 hm5C_associated_SNPs_79552 0 0 1 0 1 COL9A3 chr20:61468435 3'AG 61468435 Downstream 72bp
chr19 11474491 11474491 1 + G A UCEC 11474488 + 11474468 11474508 41 CCCCCACCATGGATAGCCCCCTCGAAAAGTTAAGTGTGGCG CCCCCACCATGGATAGCCCCCTCAAAAAGTTAAGTGTGGCG < 41bp 0.762515625982156 0.53921466593529 0.77203405 0.3039928 prediction 0.446601920093732 Functional Loss - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11474488 chr19:11474491 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_79553 0 0 1 0 2 PLPPR2 chr19:11474495 5'GT 11474495 Upstream 5bp
chr19 11474491 11474491 1 + G A UCEC 11474488 + 11474468 11474508 41 CCCCCACCATGGATAGCCCCCTCGAAAAGTTAAGTGTGGCG CCCCCACCATGGATAGCCCCCTCAAAAAGTTAAGTGTGGCG < 41bp 0.762515625982156 0.53921466593529 0.77203405 0.3039928 prediction 0.446601920093732 Functional Loss - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11474488 chr19:11474491 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_79553 0 0 1 0 2 PLPPR2 chr19:11474511 5'GT 11474511 Upstream 21bp
chr19 11152043 11152043 1 + C T STAD 11152041 + 11152021 11152061 41 GGTCCGGCAGAAGAAATCATCACGGAAGCGCAAGCGAGACA GGTCCGGCAGAAGAAATCATCATGGAAGCGCAAGCGAGACA < 41bp 0.723293017038953 0.470748974065144 0.684327 0.84948516 prediction 0.446586034077905 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11152041 chr19:11152043 nonsynonymous SNV 0.878 5 23 hm5C_associated_SNPs_79557 0 0 1 0 1 SMARCA4 chr19:11151983 3'AG 11151983 Downstream 61bp
chr19 11152044 11152044 1 + G A UCEC 11152041 + 11152021 11152061 41 GGTCCGGCAGAAGAAATCATCACGGAAGCGCAAGCGAGACA GGTCCGGCAGAAGAAATCATCACAGAAGCGCAAGCGAGACA < 41bp 0.723293017038953 0.498971027319071 0.684327 0.61122674 prediction 0.446586034077905 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11152041 chr19:11152044 nonsynonymous SNV 0.922 4 24 hm5C_associated_SNPs_79558 3 0 1 0 1 SMARCA4 chr19:11151983 3'AG 11151983 Downstream 62bp
chr21 35260544 35260544 1 + C T rs2834286 35260542 + 35260522 35260562 41 TTACGAAGTGTCTTCTGCTGCACGAAGTCCCCACGGGAGAG TTACGAAGTGTCTTCTGCTGCATGAAGTCCCCACGGGAGAG < 41bp 0.723287690380232 0.496120688523797 0.49837437 0.48431486 prediction 0.446575380760464 Functional Loss - ITSN1 ENSG00000205726 CDS Human protein_coding chr21:35260542 chr21:35260544 synonymous SNV . 0 23 hm5C_associated_SNPs_79563 0 0 0 0 1 ITSN1 chr21:35260456 3'AG 35260456 Downstream 89bp
chr9 132395060 132395060 1 + G A SKCM 132395057 + 132395037 132395077 41 TACTGGAAACAAATCCCACCCACGGTGGACGGCATGCTTGG TACTGGAAACAAATCCCACCCACAGTGGACGGCATGCTTGG < 41bp 0.773893994320585 0.550611265688915 0.40175086 0.15891808 prediction 0.44656545726334 Functional Loss - NTMT1 ENSG00000148335 CDS Human protein_coding chr9:132395057 chr9:132395060 synonymous SNV . 0 24 hm5C_associated_SNPs_79566 0 0 1 0 1 NTMT1 chr9:132395080 5'GT 132395080 Upstream 21bp
chr1 19071366 19071366 1 + C T ESCA 19071364 + 19071344 19071384 41 CCACCCAGCGTCGCATGAAGCTCGGGGAGCACTCTGCTGTG CCACCCAGCGTCGCATGAAGCTTGGGGAGCACTCTGCTGTG < 41bp 0.828045607023665 0.604766539820134 0.47774222 0.24849045 prediction 0.446558134407061 Functional Loss - PAX7 ENSG00000009709 CDS Human protein_coding chr1:19071364 chr1:19071366 synonymous SNV . 0 23 hm5C_associated_SNPs_79568 0 0 0 0 1 PAX7 chr1:19071308 3'AG 19071308 Downstream 59bp
chr5 172395581 172395581 1 + C T rs17075427 172395579 + 172395559 172395599 41 AGGCCAACGGCACAACTGTCCACGTGGGCATTCACCCAAGC AGGCCAACGGCACAACTGTCCATGTGGGCATTCACCCAAGC < 41bp 0.817813572604468 0.594534817212346 0.37464303 0.36122495 prediction 0.446557510784244 Functional Loss - RPL26L1 ENSG00000037241 CDS Human protein_coding chr5:172395579 chr5:172395581 synonymous SNV . 0 23 hm5C_associated_SNPs_79569 0 0 1 0 1 RPL26L1 chr5:172395602 5'GT 172395602 Upstream 22bp
chr10 42982435 42982435 1 + G A rs146280589 42982432 + 42982412 42982452 41 TCTTCATTCCTCTAGCACTACTGGGTTGGGGTCTCCACGAC TCTTCATTCCTCTAGCACTACTGAGTTGGGGTCTCCACGAC < 41bp 0.742926332030904 0.519653146499479 0.9009101 0.86567163 prediction 0.44654637106285 Functional Loss - LINC00839 ENSG00000185904 ncRNA_exonic Human lincRNA chr10:42982432 chr10:42982435 . . 0 24 hm5C_associated_SNPs_79572 0 0 0 0 1 LINC00839 chr10:42982427 3'AG 42982427 Downstream 9bp
chr5 80422965 80422965 1 + G A SARC 80422962 + 80422942 80422982 41 TGCAATAGCCACAGCTGCAGCAGGACATGGGAGTCCACCAG TGCAATAGCCACAGCTGCAGCAGAACATGGGAGTCCACCAG < 41bp 0.760232535807593 0.536963740762874 0.7873131 0.3084855 prediction 0.446537590089436 Functional Loss - RASGRF2 ENSG00000113319 CDS Human protein_coding chr5:80422962 chr5:80422965 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_79575 0 0 1 0 2 RASGRF2 chr5:80422893 3'AG 80422893 Downstream 73bp
chr5 80422965 80422965 1 + G A SARC 80422962 + 80422942 80422982 41 TGCAATAGCCACAGCTGCAGCAGGACATGGGAGTCCACCAG TGCAATAGCCACAGCTGCAGCAGAACATGGGAGTCCACCAG < 41bp 0.760232535807593 0.536963740762874 0.7873131 0.3084855 prediction 0.446537590089436 Functional Loss - RASGRF2 ENSG00000113319 CDS Human protein_coding chr5:80422962 chr5:80422965 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_79575 0 0 1 0 2 RASGRF2 chr5:80422982 5'GT 80422982 Upstream 18bp
chr4 88977295 88977295 1 + C T SKCM 88977293 + 88977273 88977313 41 CCAGCTCTCGACAACCATGTCTCGATGTGCCAAAGACCTGT CCAGCTCTCGACAACCATGTCTTGATGTGCCAAAGACCTGT < 41bp 0.723266247759093 0.415097333406774 0.8723546 0.16879597 prediction 0.446532495518187 Functional Loss - PKD2 ENSG00000118762 CDS Human protein_coding chr4:88977293 chr4:88977295 stopgain 0.996 1 23 hm5C_associated_SNPs_79577 0 0 1 0 1 PKD2 chr4:88977238 3'AG 88977238 Downstream 58bp
chr4 88977296 88977296 1 + G A UCEC 88977293 + 88977273 88977313 41 CCAGCTCTCGACAACCATGTCTCGATGTGCCAAAGACCTGT CCAGCTCTCGACAACCATGTCTCAATGTGCCAAAGACCTGT < 41bp 0.723266247759093 0.494436676936231 0.8723546 0.31983018 prediction 0.446532495518187 Functional Loss - PKD2 ENSG00000118762 CDS Human protein_coding chr4:88977293 chr4:88977296 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_79578 0 0 1 0 1 PKD2 chr4:88977238 3'AG 88977238 Downstream 59bp
chr9 133278210 133278210 1 + C T rs530872878 133278208 + 133278188 133278228 41 TCGGGCAGGCCCTCCCCATCCACGCAGGCCGCTACACCTGC TCGGGCAGGCCCTCCCCATCCATGCAGGCCGCTACACCTGC < 41bp 0.723262698098253 0.475020201835387 0.18719897 0.21148908 prediction 0.446525396196507 Functional Loss - HMCN2 ENSG00000215428 CDS Human other chr9:133278208 chr9:133278210 synonymous SNV . 0 23 hm5C_associated_SNPs_79582 0 0 0 0 2 HMCN2 chr9:133278176 3'AG 133278176 Downstream 35bp
chr9 133278210 133278210 1 + C T rs530872878 133278208 + 133278188 133278228 41 TCGGGCAGGCCCTCCCCATCCACGCAGGCCGCTACACCTGC TCGGGCAGGCCCTCCCCATCCATGCAGGCCGCTACACCTGC < 41bp 0.723262698098253 0.475020201835387 0.18719897 0.21148908 prediction 0.446525396196507 Functional Loss - HMCN2 ENSG00000215428 CDS Human other chr9:133278208 chr9:133278210 synonymous SNV . 0 23 hm5C_associated_SNPs_79582 0 0 0 0 2 HMCN2 chr9:133278283 5'GT 133278283 Upstream 74bp
chr9 133278211 133278211 1 + G A ESCA 133278208 + 133278188 133278228 41 TCGGGCAGGCCCTCCCCATCCACGCAGGCCGCTACACCTGC TCGGGCAGGCCCTCCCCATCCACACAGGCCGCTACACCTGC < 41bp 0.723262698098253 0.475688910474489 0.18719897 0.08564344 prediction 0.446525396196507 Functional Loss - HMCN2 ENSG00000215428 CDS Human other chr9:133278208 chr9:133278211 nonsynonymous SNV 0.040 0 24 hm5C_associated_SNPs_79583 0 0 0 0 2 HMCN2 chr9:133278176 3'AG 133278176 Downstream 36bp
chr9 133278211 133278211 1 + G A ESCA 133278208 + 133278188 133278228 41 TCGGGCAGGCCCTCCCCATCCACGCAGGCCGCTACACCTGC TCGGGCAGGCCCTCCCCATCCACACAGGCCGCTACACCTGC < 41bp 0.723262698098253 0.475688910474489 0.18719897 0.08564344 prediction 0.446525396196507 Functional Loss - HMCN2 ENSG00000215428 CDS Human other chr9:133278208 chr9:133278211 nonsynonymous SNV 0.040 0 24 hm5C_associated_SNPs_79583 0 0 0 0 2 HMCN2 chr9:133278283 5'GT 133278283 Upstream 73bp
chr8 133829196 133829196 1 + A C GBM 133829195 + 133829175 133829215 41 GTGAGCGGAGAAGAAGATCTCAGCGTTTAGCCACCTTACCC GTGAGCGGAGAAGAAGATCTCCGCGTTTAGCCACCTTACCC < 41bp 0.779037917097768 0.555779023511343 0.75350296 0.4142978 prediction 0.446517787172849 Functional Loss - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133829195 chr8:133829196 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_79584 0 0 1 0 1 PHF20L1 chr8:133829133 3'AG 133829133 Downstream 64bp
chr11 67173401 67173401 1 + G A SKCM 67173398 + 67173378 67173418 41 CAGGGGCTCCTGCAGGTGCTCAAGGCCTACACCCTGTATCG CAGGGGCTCCTGCAGGTGCTCAAAGCCTACACCCTGTATCG < 41bp 0.803959074184572 0.580701646493354 0.8916604 0.5275908 prediction 0.446514855382434 Functional Loss - TBC1D10C ENSG00000175463 CDS Human protein_coding chr11:67173398 chr11:67173401 nonsynonymous SNV 0.955 0 24 hm5C_associated_SNPs_79585 0 0 0 0 3 TBC1D10C chr11:67173374 3'AG 67173374 Downstream 28bp
chr11 67173401 67173401 1 + G A SKCM 67173398 + 67173378 67173418 41 CAGGGGCTCCTGCAGGTGCTCAAGGCCTACACCCTGTATCG CAGGGGCTCCTGCAGGTGCTCAAAGCCTACACCCTGTATCG < 41bp 0.803959074184572 0.580701646493354 0.8916604 0.5275908 prediction 0.446514855382434 Functional Loss - TBC1D10C ENSG00000175463 CDS Human protein_coding chr11:67173398 chr11:67173401 nonsynonymous SNV 0.955 0 24 hm5C_associated_SNPs_79585 0 0 0 0 3 TBC1D10C chr11:67173378 3'AG 67173378 Downstream 24bp
chr11 67173401 67173401 1 + G A SKCM 67173398 + 67173378 67173418 41 CAGGGGCTCCTGCAGGTGCTCAAGGCCTACACCCTGTATCG CAGGGGCTCCTGCAGGTGCTCAAAGCCTACACCCTGTATCG < 41bp 0.803959074184572 0.580701646493354 0.8916604 0.5275908 prediction 0.446514855382434 Functional Loss - TBC1D10C ENSG00000175463 CDS Human protein_coding chr11:67173398 chr11:67173401 nonsynonymous SNV 0.955 0 24 hm5C_associated_SNPs_79585 0 0 0 0 3 TBC1D10C chr11:67173488 5'GT 67173488 Upstream 88bp
chrX 140926198 140926198 1 + C T SKCM 140926196 + 140926176 140926216 41 ATGTGCCACATATGCCTTATCCCCAGTGGTGCTCCCACCTC ATGTGCCACATATGCCTTATCCTCAGTGGTGCTCCCACCTC < 41bp 0.791087542137472 0.567833375597378 0.119532734 0.07161367 prediction 0.446508333080188 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140926196 chrX:140926198 nonsynonymous SNV 0.029 2 23 hm5C_associated_SNPs_79587 0 0 0 0 1 MAGEC3 chrX:140926224 5'GT 140926224 Upstream 27bp
chr1 228210572 228210572 1 + C T HNSC 228210570 + 228210550 228210590 41 GGTGGAACTGCACCACCGTCCACGACAGCCTGGCCATCTTC GGTGGAACTGCACCACCGTCCATGACAGCCTGGCCATCTTC < 41bp 0.827042329110745 0.603788653878013 0.19785503 0.20260966 prediction 0.446507350465465 Functional Loss - WNT3A ENSG00000154342 CDS Human protein_coding chr1:228210570 chr1:228210572 synonymous SNV . 0 23 hm5C_associated_SNPs_79589 0 0 0 0 1 WNT3A chr1:228210609 5'GT 228210609 Upstream 38bp
chr6 37414178 37414178 1 + C T SKCM 37414175 + 37414155 37414195 41 GAAGAGGCTTGGGTCTGACACTCCGGGGCTTTGACCAGGAG GAAGAGGCTTGGGTCTGACACTCTGGGGCTTTGACCAGGAG < 41bp 0.756195729336111 0.532943124412451 0.22629592 0.18063444 prediction 0.44650520984732 Functional Loss - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37414175 chr6:37414178 nonsynonymous SNV 0.979 1 24 hm5C_associated_SNPs_79591 0 0 1 0 1 CMTR1 chr6:37414225 5'GT 37414225 Upstream 48bp
chr9 95738973 95738973 1 + G A SKCM 95738970 + 95738950 95738990 41 AACACCCCCCAGAAGGCTGACAAGGATGCCGGCCTGGCCCA AACACCCCCCAGAAGGCTGACAAAGATGCCGGCCTGGCCCA < 41bp 0.798762778784734 0.575511570779795 0.7706864 0.43157575 prediction 0.446502416009879 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95738970 chr9:95738973 synonymous SNV . 0 24 hm5C_associated_SNPs_79592 0 0 0 0 1 FGD3 chr9:95738991 5'GT 95738991 Upstream 19bp
chr20 62452145 62452145 1 + G A rs541231862 62452142 + 62452122 62452162 41 CCCAGGCTGGAGTGCCACAGCACGATCTCGGCTCACTGCAA CCCAGGCTGGAGTGCCACAGCACAATCTCGGCTCACTGCAA < 41bp 0.744271393896353 0.521020540431116 0.13018823 0.033293217 prediction 0.446501706930473 Functional Loss - ZBTB46-AS1 ENSG00000130584 intronic Human protein_coding chr20:62452142 chr20:62452145 . . 0 24 hm5C_associated_SNPs_79593 0 0 0 0 2 ZBTB46-AS1 chr20:62452103 3'AG 62452103 Downstream 43bp
chr20 62452145 62452145 1 + G A rs541231862 62452142 + 62452122 62452162 41 CCCAGGCTGGAGTGCCACAGCACGATCTCGGCTCACTGCAA CCCAGGCTGGAGTGCCACAGCACAATCTCGGCTCACTGCAA < 41bp 0.744271393896353 0.521020540431116 0.13018823 0.033293217 prediction 0.446501706930473 Functional Loss - ZBTB46-AS1 ENSG00000130584 intronic Human protein_coding chr20:62452142 chr20:62452145 . . 0 24 hm5C_associated_SNPs_79593 0 0 0 0 2 ZBTB46-AS1 chr20:62452224 5'GT 62452224 Upstream 80bp
chr11 34160751 34160751 1 + G A UCEC 34160748 + 34160728 34160768 41 TGTTGCCCAGAATGACCTGACCGGAGAGCACTCGTGCATCA TGTTGCCCAGAATGACCTGACCGAAGAGCACTCGTGCATCA < 41bp 0.774788323559349 0.551539632993634 0.30317423 0.061264187 prediction 0.44649738113143 Functional Loss - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34160748 chr11:34160751 nonsynonymous SNV 0.925 4 24 hm5C_associated_SNPs_79595 0 0 1 0 2 NAT10 chr11:34160738 3'AG 34160738 Downstream 14bp
chr11 34160751 34160751 1 + G A UCEC 34160748 + 34160728 34160768 41 TGTTGCCCAGAATGACCTGACCGGAGAGCACTCGTGCATCA TGTTGCCCAGAATGACCTGACCGAAGAGCACTCGTGCATCA < 41bp 0.774788323559349 0.551539632993634 0.30317423 0.061264187 prediction 0.44649738113143 Functional Loss - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34160748 chr11:34160751 nonsynonymous SNV 0.925 4 24 hm5C_associated_SNPs_79595 0 0 1 0 2 NAT10 chr11:34160834 5'GT 34160834 Upstream 84bp
chr17 34854185 34854185 1 - C T SKCM 34854188 - 34854168 34854208 41 TGGGCTTGCCTCCAGCTCCCCAGGGGCAGCCCCAGTAGCTA TGGGCTTGCCTCCAGCTCCCCAGAGGCAGCCCCAGTAGCTA < 41bp 0.80250703206206 0.579264950270748 0.9349786 0.9234679 prediction 0.446484163582624 Functional Loss - MYO19 ENSG00000141140 CDS Human other chr17:34854188 chr17:34854185 synonymous SNV . 0 24 hm5C_associated_SNPs_79596 0 0 1 0 1 MYO19 chr17:34854110 5'GT 34854110 Upstream 76bp
chr2 219292964 219292964 1 + G A SKCM 219292961 + 219292941 219292981 41 GCTCCCTAGGTAGAGATGTCCTGGAAGAGTTTCAACCGAGG GCTCCCTAGGTAGAGATGTCCTGAAAGAGTTTCAACCGAGG < 41bp 0.764257693387458 0.541015770843847 0.45546794 0.3470912 prediction 0.446483845087222 Functional Loss - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219292961 chr2:219292964 stopgain 0.994 1 24 hm5C_associated_SNPs_79597 0 0 1 0 1 VIL1 chr2:219292950 3'AG 219292950 Downstream 15bp
chr1 86919285 86919285 1 + G T rs528074724 86919282 + 86919262 86919302 41 GAGAAGACTTTGATCAGGGCCAGGGTAGGTTTGCTCATTTC GAGAAGACTTTGATCAGGGCCAGTGTAGGTTTGCTCATTTC < 41bp 0.723240656045496 0.341277859424786 0.7784227 0.29420704 prediction 0.446481312090991 Functional Loss - CLCA2 ENSG00000137975 CDS Human protein_coding chr1:86919282 chr1:86919285 nonsynonymous SNV 0.563 2 24 hm5C_associated_SNPs_79599 0 0 0 0 1 CLCA2 chr1:86919285 3'AG 86919285 Downstream 1bp
chr5 174156219 174156219 1 + G A COAD 174156216 + 174156196 174156236 41 ACACAAGACCAATCGGAAGCCGCGCACGCCCTTTACCACAT ACACAAGACCAATCGGAAGCCGCACACGCCCTTTACCACAT < 41bp 0.725567439882785 0.502331367124665 0.13035679 0.059437156 prediction 0.44647214551624 Functional Loss - MSX2 ENSG00000120149 CDS Human protein_coding chr5:174156216 chr5:174156219 nonsynonymous SNV 0.070 5 24 hm5C_associated_SNPs_79600 0 0 0 0 1 MSX2 chr5:174156162 3'AG 174156162 Downstream 58bp
chr17 76203000 76203000 1 + G A BLCA 76202997 + 76202977 76203017 41 CTCTTCCTGTTCCAGATTATCTTGAAAACAATCTTCCAGTA CTCTTCCTGTTCCAGATTATCTTAAAAACAATCTTCCAGTA < 41bp 0.723235623118537 0.490401975181796 0.16662201 0.22628045 prediction 0.446471246237074 Functional Loss - AFMID ENSG00000183077 CDS Human protein_coding chr17:76202997 chr17:76203000 nonsynonymous SNV 0.948 0 24 hm5C_associated_SNPs_79601 0 0 1 2 1 AFMID chr17:76202992 3'AG 76202992 Downstream 9bp
chr12 57911162 57911162 1 + A C SKCM 57911158 + 57911138 57911178 41 GCTCCCAGCTGGACAGTGTCCCGAAGGAGAAAGGCAATGAC GCTCCCAGCTGGACAGTGTCCCGACGGAGAAAGGCAATGAC < 41bp 0.723234142323665 0.315085566421147 0.736781 0.7866374 prediction 0.44646828464733 Functional Loss - DDIT3 ENSG00000175197 CDS Human protein_coding chr12:57911158 chr12:57911162 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_79603 0 0 1 0 1 DDIT3 chr12:57911066 3'AG 57911066 Downstream 97bp
chr13 113975949 113975949 1 + G T LUAD 113975947 + 113975927 113975967 41 CAATTCCTACAAGTGCAACGCGGAGGAGCACGTCCGTGTCA CAATTCCTACAAGTGCAACGCGTAGGAGCACGTCCGTGTCA < 41bp 0.723233633086552 0.362659432253004 0.8516857 0.29394162 prediction 0.446467266173104 Functional Loss - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113975947 chr13:113975949 stopgain 0.059 1 23 hm5C_associated_SNPs_79604 0 0 1 0 2 LAMP1 chr13:113975872 3'AG 113975872 Downstream 78bp
chr13 113975949 113975949 1 + G T LUAD 113975947 + 113975927 113975967 41 CAATTCCTACAAGTGCAACGCGGAGGAGCACGTCCGTGTCA CAATTCCTACAAGTGCAACGCGTAGGAGCACGTCCGTGTCA < 41bp 0.723233633086552 0.362659432253004 0.8516857 0.29394162 prediction 0.446467266173104 Functional Loss - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113975947 chr13:113975949 stopgain 0.059 1 23 hm5C_associated_SNPs_79604 0 0 1 0 2 LAMP1 chr13:113976042 5'GT 113976042 Upstream 94bp
chr3 50390757 50390757 1 + G A UCEC 50390754 + 50390734 50390774 41 CCTCTCACGGAAAGGCCGAGCACGCTGCCACTGGGTGCTGC CCTCTCACGGAAAGGCCGAGCACACTGCCACTGGGTGCTGC < 41bp 0.723229239334391 0.484187205240924 0.34078687 0.20714357 prediction 0.446458478668781 Functional Loss - CYB561D2 ENSG00000114395 CDS Human protein_coding chr3:50390754 chr3:50390757 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_79606 0 0 0 0 1 CYB561D2 chr3:50390672 3'AG 50390672 Downstream 86bp
chr11 22363306 22363306 1 + G T LUAD 22363303 + 22363283 22363323 41 TCAACAACAGCACCATCCACCGCGGGGGCAAGGTCATCAAG TCAACAACAGCACCATCCACCGCTGGGGCAAGGTCATCAAG < 41bp 0.924760080404857 0.701535372291844 0.7003929 0.0747 prediction 0.446449416226027 Functional Loss - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22363303 chr11:22363306 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_79608 0 0 0 0 1 SLC17A6 chr11:22363326 5'GT 22363326 Upstream 21bp
chr4 71339791 71339791 1 + C T UCEC 71339789 + 71339769 71339809 41 TGTGCACTGAGTGCTTGCTTCTCGGTAAGTATTCACCCAAA TGTGCACTGAGTGCTTGCTTCTTGGTAAGTATTCACCCAAA < 41bp 0.825660936956018 0.602437190609034 0.31893364 0.2381765 prediction 0.446447492693969 Functional Loss - MUC7 ENSG00000171195 CDS Human protein_coding chr4:71339789 chr4:71339791 nonsynonymous SNV 0.201 2 23 hm5C_associated_SNPs_79609 0 0 0 0 2 MUC7 chr4:71339724 3'AG 71339724 Downstream 68bp
chr4 71339791 71339791 1 + C T UCEC 71339789 + 71339769 71339809 41 TGTGCACTGAGTGCTTGCTTCTCGGTAAGTATTCACCCAAA TGTGCACTGAGTGCTTGCTTCTTGGTAAGTATTCACCCAAA < 41bp 0.825660936956018 0.602437190609034 0.31893364 0.2381765 prediction 0.446447492693969 Functional Loss - MUC7 ENSG00000171195 CDS Human protein_coding chr4:71339789 chr4:71339791 nonsynonymous SNV 0.201 2 23 hm5C_associated_SNPs_79609 0 0 0 0 2 MUC7 chr4:71339792 5'GT 71339792 Upstream 2bp
chr19 55857910 55857910 1 + G A UCEC 55857907 + 55857887 55857927 41 CGAACCAGGCCTAGGGAGCCCGCGTTGCCACCACGGCCCCT CGAACCAGGCCTAGGGAGCCCGCATTGCCACCACGGCCCCT < 41bp 0.723222523420975 0.469139815648645 0.3892551 0.15321654 prediction 0.446445046841951 Functional Loss - KMT5C ENSG00000133247 CDS Human protein_coding chr19:55857907 chr19:55857910 synonymous SNV . 0 24 hm5C_associated_SNPs_79611 0 0 1 0 1 KMT5C chr19:55857868 3'AG 55857868 Downstream 43bp
chr15 40708534 40708534 1 + G A UCEC 40708531 + 40708511 40708551 41 ACTCAGCTGAGTGTGCCACACAGGTAGCCCTGGACGGCATT ACTCAGCTGAGTGTGCCACACAGATAGCCCTGGACGGCATT < 41bp 0.723221773250731 0.477946329487151 0.45935956 0.12114051 prediction 0.446443546501461 Functional Loss - IVD ENSG00000128928 CDS Human protein_coding chr15:40708531 chr15:40708534 nonsynonymous SNV 0.980 2 24 hm5C_associated_SNPs_79614 0 0 1 0 2 IVD chr15:40708489 3'AG 40708489 Downstream 46bp
chr15 40708534 40708534 1 + G A UCEC 40708531 + 40708511 40708551 41 ACTCAGCTGAGTGTGCCACACAGGTAGCCCTGGACGGCATT ACTCAGCTGAGTGTGCCACACAGATAGCCCTGGACGGCATT < 41bp 0.723221773250731 0.477946329487151 0.45935956 0.12114051 prediction 0.446443546501461 Functional Loss - IVD ENSG00000128928 CDS Human protein_coding chr15:40708531 chr15:40708534 nonsynonymous SNV 0.980 2 24 hm5C_associated_SNPs_79614 0 0 1 0 2 IVD chr15:40708561 5'GT 40708561 Upstream 28bp
chr12 4853740 4853740 1 + G A rs34687270 4853737 + 4853717 4853757 41 GCTTTACAACCAGAAGTATCCAGGACTACTGAAAATAATAC GCTTTACAACCAGAAGTATCCAGAACTACTGAAAATAATAC < 41bp 0.729247368116725 0.506025888564404 0.30934256 0.17550391 prediction 0.446442959104641 Functional Loss - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4853737 chr12:4853740 nonsynonymous SNV 0.945 3 24 hm5C_associated_SNPs_79615 0 0 0 0 1 GALNT8 chr12:4853683 3'AG 4853683 Downstream 58bp
chr5 156982 156982 1 + G A SKCM 156979 + 156959 156999 41 CGAACAATCGTCTCCAGCAGCTGGAGCACCTCCGGGAGCTG CGAACAATCGTCTCCAGCAGCTGAAGCACCTCCGGGAGCTG < 41bp 0.723220045536772 0.471612910862489 0.87228227 0.90926105 prediction 0.446440091073545 Functional Loss - PLEKHG4B ENSG00000153404 CDS Human protein_coding chr5:156979 chr5:156982 nonsynonymous SNV 0.013 2 24 hm5C_associated_SNPs_79616 0 0 0 0 2 PLEKHG4B chr5:156888 3'AG 156888 Downstream 95bp
chr5 156982 156982 1 + G A SKCM 156979 + 156959 156999 41 CGAACAATCGTCTCCAGCAGCTGGAGCACCTCCGGGAGCTG CGAACAATCGTCTCCAGCAGCTGAAGCACCTCCGGGAGCTG < 41bp 0.723220045536772 0.471612910862489 0.87228227 0.90926105 prediction 0.446440091073545 Functional Loss - PLEKHG4B ENSG00000153404 CDS Human protein_coding chr5:156979 chr5:156982 nonsynonymous SNV 0.013 2 24 hm5C_associated_SNPs_79616 0 0 0 0 2 PLEKHG4B chr5:157026 5'GT 157026 Upstream 45bp
chr3 51980220 51980220 1 + G T LUSC 51980218 + 51980198 51980238 41 CCCACTCCAAACTGGGTAATCGGAAGCTGCTGTGGCATGGC CCCACTCCAAACTGGGTAATCGTAAGCTGCTGTGGCATGGC < 41bp 0.905985114996205 0.682765737982548 0.907006 0.53971547 prediction 0.446438754027314 Functional Loss - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51980218 chr3:51980220 synonymous SNV . 0 23 hm5C_associated_SNPs_79617 0 0 0 0 1 PARP3 chr3:51980182 3'AG 51980182 Downstream 39bp
chr1 70541913 70541913 1 + G A BLCA 70541910 + 70541890 70541930 41 TCCCCTCTTCACAGGCCACCCGGGGACCTCAGCCTGGACGG TCCCCTCTTCACAGGCCACCCGGAGACCTCAGCCTGGACGG < 41bp 0.755840461090413 0.532631518051098 0.915702 0.72790384 prediction 0.44641788607863 Functional Loss - LRRC7 ENSG00000033122 CDS Human protein_coding chr1:70541910 chr1:70541913 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_79618 0 0 0 0 1 LRRC7 chr1:70541981 5'GT 70541981 Upstream 69bp
chr11 20652303 20652303 1 + C T BRCA 20652300 + 20652280 20652320 41 TTTGCCGGCTTCGTCATCTTCTCCGTTATCGGCTTCATGGC TTTGCCGGCTTCGTCATCTTCTCTGTTATCGGCTTCATGGC < 41bp 0.7477102023985 0.524503674495484 0.024840146 0.02189532 prediction 0.446413055806032 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20652300 chr11:20652303 synonymous SNV . 0 24 hm5C_associated_SNPs_79619 0 0 0 0 2 SLC6A5 chr11:20652237 3'AG 20652237 Downstream 67bp
chr11 20652303 20652303 1 + C T BRCA 20652300 + 20652280 20652320 41 TTTGCCGGCTTCGTCATCTTCTCCGTTATCGGCTTCATGGC TTTGCCGGCTTCGTCATCTTCTCTGTTATCGGCTTCATGGC < 41bp 0.7477102023985 0.524503674495484 0.024840146 0.02189532 prediction 0.446413055806032 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20652300 chr11:20652303 synonymous SNV . 0 24 hm5C_associated_SNPs_79619 0 0 0 0 2 SLC6A5 chr11:20652361 5'GT 20652361 Upstream 59bp
chr7 39472834 39472834 1 + G A SKCM 39472831 + 39472811 39472851 41 ATTGGGAACCAGATCCTGCCCGTGATCAACACCCAGGGCAT ATTGGGAACCAGATCCTGCCCGTAATCAACACCCAGGGCAT < 41bp 0.766049434416374 0.542843284316055 0.12302813 0.060056567 prediction 0.446412300200638 Functional Loss - POU6F2 ENSG00000106536 CDS Human protein_coding chr7:39472831 chr7:39472834 synonymous SNV . 0 24 hm5C_associated_SNPs_79620 0 0 0 0 1 POU6F2 chr7:39472882 5'GT 39472882 Upstream 49bp
chr19 19218737 19218737 1 + T C COAD 19218736 + 19218716 19218756 41 TTTCATGTCTTCATCCGCATCTCGAGAGAAGAGGGGCTGAA TTTCATGTCTTCATCCGCATCCCGAGAGAAGAGGGGCTGAA < 41bp 0.839274762444739 0.616069392475309 0.91669613 0.2784856 prediction 0.446410739938859 Functional Loss - SLC25A42 ENSG00000181035 CDS Human protein_coding chr19:19218736 chr19:19218737 nonsynonymous SNV 0.987 3 22 hm5C_associated_SNPs_79622 0 0 1 0 1 SLC25A42 chr19:19218703 3'AG 19218703 Downstream 35bp
chr3 38182296 38182296 1 + G T UCEC 38182293 + 38182273 38182313 41 TCTGATGATTACCTGCAGAGCAAGGAATGTGACTTCCAGAC TCTGATGATTACCTGCAGAGCAATGAATGTGACTTCCAGAC < 41bp 0.723204441275971 0.317658074193476 0.51916623 0.09891003 prediction 0.446408882551943 Functional Loss - MYD88 ENSG00000172936 CDS Human protein_coding chr3:38182293 chr3:38182296 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_79623 0 0 0 0 2 MYD88 chr3:38182248 3'AG 38182248 Downstream 49bp
chr3 38182296 38182296 1 + G T UCEC 38182293 + 38182273 38182313 41 TCTGATGATTACCTGCAGAGCAAGGAATGTGACTTCCAGAC TCTGATGATTACCTGCAGAGCAATGAATGTGACTTCCAGAC < 41bp 0.723204441275971 0.317658074193476 0.51916623 0.09891003 prediction 0.446408882551943 Functional Loss - MYD88 ENSG00000172936 CDS Human protein_coding chr3:38182293 chr3:38182296 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_79623 0 0 0 0 2 MYD88 chr3:38182339 5'GT 38182339 Upstream 44bp
chr12 51089667 51089667 1 + G T UCEC 51089665 + 51089645 51089685 41 GTAAAATGTCGGGACTTGCACTGGGCTATGATGGCACATCG GTAAAATGTCGGGACTTGCACTTGGCTATGATGGCACATCG < 41bp 0.723203183942726 0.383442613385609 0.69543105 0.14529535 prediction 0.446406367885453 Functional Loss - DIP2B ENSG00000066084 CDS Human protein_coding chr12:51089665 chr12:51089667 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_79625 0 0 1 0 2 DIP2B chr12:51089631 3'AG 51089631 Downstream 37bp
chr12 51089667 51089667 1 + G T UCEC 51089665 + 51089645 51089685 41 GTAAAATGTCGGGACTTGCACTGGGCTATGATGGCACATCG GTAAAATGTCGGGACTTGCACTTGGCTATGATGGCACATCG < 41bp 0.723203183942726 0.383442613385609 0.69543105 0.14529535 prediction 0.446406367885453 Functional Loss - DIP2B ENSG00000066084 CDS Human protein_coding chr12:51089665 chr12:51089667 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_79625 0 0 1 0 2 DIP2B chr12:51089750 5'GT 51089750 Upstream 84bp
chr17 7556794 7556794 1 + A C COAD 7556790 + 7556770 7556810 41 AGACTGTCTCCGACCATACCCCCAAGTACCAGGACCGACTG AGACTGTCTCCGACCATACCCCCACGTACCAGGACCGACTG < 41bp 0.723200001428235 0.292491485044376 0.0479891 0.14055687 prediction 0.44640000285647 Functional Loss - ATP1B2 ENSG00000129244 CDS Human protein_coding chr17:7556790 chr17:7556794 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_79627 0 0 0 0 1 ATP1B2 chr17:7556820 5'GT 7556820 Upstream 27bp
chr1 167088583 167088583 1 + T C PRAD 167088582 + 167088562 167088602 41 GTTTACACTGGCCCCGAATTCTACACTGGCCTGGAGATCCA GTTTACACTGGCCCCGAATTCCACACTGGCCTGGAGATCCA < 41bp 0.830367169761516 0.607170993601878 0.8461031 0.15911314 prediction 0.446392352319277 Functional Loss - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167088582 chr1:167088583 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_79630 0 0 0 0 1 DUSP27 chr1:167088486 3'AG 167088486 Downstream 98bp
chr19 51919922 51919922 1 + G A GBM 51919919 + 51919899 51919939 41 ACCCTCCCAGGCCACACTCACAGGCCACACGGAGTCGGACG ACCCTCCCAGGCCACACTCACAGACCACACGGAGTCGGACG < 41bp 0.768117461319729 0.544922489617717 0.3907594 0.18949011 prediction 0.446389943404024 Functional Loss - LOC100129083;SIGLEC10 ENSG00000142512 CDS Human protein_coding chr19:51919919 chr19:51919922 nonsynonymous SNV 0.863 2 24 hm5C_associated_SNPs_79631 0 0 0 0 1 LOC100129083;SIGLEC10 chr19:51919984 5'GT 51919984 Upstream 63bp
chr15 90766816 90766816 1 + T C STAD 90766815 + 90766795 90766835 41 ATGAGGGTGGAGAGCGGGTGCTACAGCAGCGCTGGACCTCC ATGAGGGTGGAGAGCGGGTGCCACAGCAGCGCTGGACCTCC < 41bp 0.809057684622294 0.585867290157563 0.93108124 0.694807 prediction 0.446380788929462 Functional Loss - SEMA4B ENSG00000185033 CDS Human protein_coding chr15:90766815 chr15:90766816 nonsynonymous SNV 0.633 4 22 hm5C_associated_SNPs_79634 0 0 1 0 1 SEMA4B chr15:90766791 3'AG 90766791 Downstream 26bp
chr12 113822701 113822701 1 + G T LUAD 113822699 + 113822679 113822719 41 TGGACTACAAGGCGTTCATCCCGGGTGGGCCCAGCCCCGGG TGGACTACAAGGCGTTCATCCCTGGTGGGCCCAGCCCCGGG < 41bp 0.723189778191617 0.360889483529673 0.9229423 0.3948506 prediction 0.446379556383235 Functional Loss - PLBD2 ENSG00000151176 CDS Human protein_coding chr12:113822699 chr12:113822701 synonymous SNV . 0 23 hm5C_associated_SNPs_79636 0 0 1 0 2 PLBD2 chr12:113822656 3'AG 113822656 Downstream 46bp
chr12 113822701 113822701 1 + G T LUAD 113822699 + 113822679 113822719 41 TGGACTACAAGGCGTTCATCCCGGGTGGGCCCAGCCCCGGG TGGACTACAAGGCGTTCATCCCTGGTGGGCCCAGCCCCGGG < 41bp 0.723189778191617 0.360889483529673 0.9229423 0.3948506 prediction 0.446379556383235 Functional Loss - PLBD2 ENSG00000151176 CDS Human protein_coding chr12:113822699 chr12:113822701 synonymous SNV . 0 23 hm5C_associated_SNPs_79636 0 0 1 0 2 PLBD2 chr12:113822751 5'GT 113822751 Upstream 51bp
chr11 45949843 45949843 1 + C T UCEC 45949841 + 45949821 45949861 41 TGAACCCTACGTGGTGGTGCCACGAGACTGTCCCCGCTATG TGAACCCTACGTGGTGGTGCCATGAGACTGTCCCCGCTATG < 41bp 0.84021103773699 0.617024235425329 0.7636052 0.5018218 prediction 0.446373604623323 Functional Loss - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45949841 chr11:45949843 stopgain 0.259 1 23 hm5C_associated_SNPs_79637 0 0 1 0 1 LARGE2 chr11:45949923 5'GT 45949923 Upstream 81bp
chr3 40453404 40453404 1 + G A BLCA 40453401 + 40453381 40453421 41 GGCAGGTTCCATCCCACCTCCACGGATCCACCCCCATTCAC GGCAGGTTCCATCCCACCTCCACAGATCCACCCCCATTCAC < 41bp 0.810459707820425 0.587272939538946 0.36185196 0.22508964 prediction 0.446373536562956 Functional Loss - ENTPD3 ENSG00000168032 CDS Human protein_coding chr3:40453401 chr3:40453404 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_79638 0 0 0 0 1 ENTPD3 chr3:40453453 5'GT 40453453 Upstream 50bp
chr11 65292702 65292702 1 + C T COAD 65292700 + 65292680 65292720 41 AGCCCCCAGAGGGCGGCCTGCCCGGGCCCTGGGCCCTGCAC AGCCCCCAGAGGGCGGCCTGCCTGGGCCCTGGGCCCTGCAC < 41bp 0.755339850809649 0.53215589491129 0.7675041 0.2976176 prediction 0.44636791179672 Functional Loss - SCYL1 ENSG00000142186 CDS Human protein_coding chr11:65292700 chr11:65292702 synonymous SNV . 0 23 hm5C_associated_SNPs_79639 0 0 1 0 1 SCYL1 chr11:65292735 5'GT 65292735 Upstream 34bp
chr19 35540289 35540289 1 + G C COAD 35540285 + 35540265 35540305 41 ACAGCCATCGGGGCGGCATCCTGGGCCATTGGTGAGAGCGG ACAGCCATCGGGGCGGCATCCTGGCCCATTGGTGAGAGCGG < 41bp 0.862351124875043 0.639168290771317 0.91790974 0.7501217 prediction 0.446365668207453 Functional Loss - HPN ENSG00000105707 CDS Human protein_coding chr19:35540285 chr19:35540289 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_79640 0 0 1 0 2 HPN chr19:35540194 3'AG 35540194 Downstream 96bp
chr19 35540289 35540289 1 + G C COAD 35540285 + 35540265 35540305 41 ACAGCCATCGGGGCGGCATCCTGGGCCATTGGTGAGAGCGG ACAGCCATCGGGGCGGCATCCTGGCCCATTGGTGAGAGCGG < 41bp 0.862351124875043 0.639168290771317 0.91790974 0.7501217 prediction 0.446365668207453 Functional Loss - HPN ENSG00000105707 CDS Human protein_coding chr19:35540285 chr19:35540289 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_79640 0 0 1 0 2 HPN chr19:35540295 5'GT 35540295 Upstream 7bp
chr17 30632431 30632431 1 + G A BLCA 30632428 + 30632408 30632448 41 CTTCTGGAGGGGTGTATGCTCTCGTCTCTGCCCATCTGGCC CTTCTGGAGGGGTGTATGCTCTCATCTCTGCCCATCTGGCC < 41bp 0.723180725902339 0.474227380361278 0.48468232 0.5752782 prediction 0.446361451804679 Functional Loss - RHBDL3 ENSG00000141314 CDS Human protein_coding chr17:30632428 chr17:30632431 nonsynonymous SNV 0.979 1 24 hm5C_associated_SNPs_79643 0 0 0 0 1 RHBDL3 chr17:30632460 5'GT 30632460 Upstream 30bp
chr19 46260520 46260520 1 + G A rs531279224 46260517 + 46260497 46260537 41 CTTGGCTCCCTGCCTGGACCCCAGAGAACAGCCCCCAAGGT CTTGGCTCCCTGCCTGGACCCCAAAGAACAGCCCCCAAGGT < 41bp 0.723176680998957 0.473287392214399 0.27426037 0.061347246 prediction 0.446353361997914 Functional Loss - BHMG1 ENSG00000237452 CDS Human protein_coding chr19:46260517 chr19:46260520 nonsynonymous SNV 0.027 2 24 hm5C_associated_SNPs_79646 0 0 0 0 2 BHMG1 chr19:46260435 3'AG 46260435 Downstream 86bp
chr19 46260520 46260520 1 + G A rs531279224 46260517 + 46260497 46260537 41 CTTGGCTCCCTGCCTGGACCCCAGAGAACAGCCCCCAAGGT CTTGGCTCCCTGCCTGGACCCCAAAGAACAGCCCCCAAGGT < 41bp 0.723176680998957 0.473287392214399 0.27426037 0.061347246 prediction 0.446353361997914 Functional Loss - BHMG1 ENSG00000237452 CDS Human protein_coding chr19:46260517 chr19:46260520 nonsynonymous SNV 0.027 2 24 hm5C_associated_SNPs_79646 0 0 0 0 2 BHMG1 chr19:46260535 5'GT 46260535 Upstream 16bp
chr1 17287349 17287349 1 + G T CESC 17287347 + 17287327 17287367 41 CCTGGAGGAGGCGCGTGGCACTGAAAAGCAGCAGCTGGACC CCTGGAGGAGGCGCGTGGCACTTAAAAGCAGCAGCTGGACC < 41bp 0.723170552237931 0.385439310902297 0.15080756 0.15118417 prediction 0.446341104475862 Functional Loss - CROCC ENSG00000058453 CDS Human protein_coding chr1:17287347 chr1:17287349 stopgain 0.145 0 23 hm5C_associated_SNPs_79649 0 0 0 0 1 CROCC chr1:17287253 3'AG 17287253 Downstream 97bp
chr17 61568584 61568584 1 + G A SKCM 61568581 + 61568561 61568601 41 TGCTTGCAGGGCTGGACGCCCAGGAGGATGTTTAAGGAGGC TGCTTGCAGGGCTGGACGCCCAGAAGGATGTTTAAGGAGGC < 41bp 0.762519110130127 0.539353826285529 0.88075995 0.47294912 prediction 0.446330567689196 Functional Loss - ACE ENSG00000159640;ENSG00000264813 CDS Human other chr17:61568581 chr17:61568584 synonymous SNV . 0 24 hm5C_associated_SNPs_79652 1 0 0 0 1 ACE chr17:61568570 3'AG 61568570 Downstream 15bp
chr19 36269977 36269977 1 + G A COAD 36269974 + 36269954 36269994 41 GCAGTACCTGGAGACACTGTCAGGACTGGTGGACAGTAACC GCAGTACCTGGAGACACTGTCAGAACTGGTGGACAGTAACC < 41bp 0.752938155468483 0.529777683458314 0.92369473 0.90591294 prediction 0.446320944020339 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36269974 chr19:36269977 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_79653 0 0 1 0 3 ARHGAP33 chr19:36269934 3'AG 36269934 Downstream 44bp
chr19 36269977 36269977 1 + G A COAD 36269974 + 36269954 36269994 41 GCAGTACCTGGAGACACTGTCAGGACTGGTGGACAGTAACC GCAGTACCTGGAGACACTGTCAGAACTGGTGGACAGTAACC < 41bp 0.752938155468483 0.529777683458314 0.92369473 0.90591294 prediction 0.446320944020339 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36269974 chr19:36269977 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_79653 0 0 1 0 3 ARHGAP33 chr19:36270026 5'GT 36270026 Upstream 50bp
chr19 36269977 36269977 1 + G A COAD 36269974 + 36269954 36269994 41 GCAGTACCTGGAGACACTGTCAGGACTGGTGGACAGTAACC GCAGTACCTGGAGACACTGTCAGAACTGGTGGACAGTAACC < 41bp 0.752938155468483 0.529777683458314 0.92369473 0.90591294 prediction 0.446320944020339 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36269974 chr19:36269977 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_79653 0 0 1 0 3 ARHGAP33 chr19:36270072 5'GT 36270072 Upstream 96bp
chr17 41570931 41570931 1 + G T SARC 41570929 + 41570909 41570949 41 AGTCAAAGTGCTGTCCTTCACTGGGACCAAGACCAGCCTGA AGTCAAAGTGCTGTCCTTCACTTGGACCAAGACCAGCCTGA < 41bp 0.908380909426987 0.685223045057237 0.8522365 0.15862957 prediction 0.446315728739501 Functional Loss - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41570929 chr17:41570931 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_79655 0 0 1 0 1 DHX8 chr17:41570957 5'GT 41570957 Upstream 27bp
chr3 128976392 128976392 1 + G A STAD 128976389 + 128976369 128976409 41 TAAGATGATCAGCAAGGTCACACGGCATGGCCTTAAGTCTC TAAGATGATCAGCAAGGTCACACAGCATGGCCTTAAGTCTC < 41bp 0.781552806353264 0.558395176894403 0.09905839 0.03884095 prediction 0.446315258917722 Functional Loss - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128976389 chr3:128976392 nonsynonymous SNV 0.063 1 24 hm5C_associated_SNPs_79657 0 0 1 0 2 COPG1 chr3:128976313 3'AG 128976313 Downstream 80bp
chr3 128976392 128976392 1 + G A STAD 128976389 + 128976369 128976409 41 TAAGATGATCAGCAAGGTCACACGGCATGGCCTTAAGTCTC TAAGATGATCAGCAAGGTCACACAGCATGGCCTTAAGTCTC < 41bp 0.781552806353264 0.558395176894403 0.09905839 0.03884095 prediction 0.446315258917722 Functional Loss - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128976389 chr3:128976392 nonsynonymous SNV 0.063 1 24 hm5C_associated_SNPs_79657 0 0 1 0 2 COPG1 chr3:128976470 5'GT 128976470 Upstream 79bp
chr4 88047467 88047467 1 + C T SKCM 88047464 + 88047444 88047484 41 AGAAGAGTAGAGGGGAAGGGCTCCAGAAGCTCCTCGGAGCA AGAAGAGTAGAGGGGAAGGGCTCTAGAAGCTCCTCGGAGCA < 41bp 0.745238933607429 0.52208660238347 0.90880316 0.9004282 prediction 0.446304662447918 Functional Loss - AFF1 ENSG00000172493 CDS Human protein_coding chr4:88047464 chr4:88047467 synonymous SNV . 0 24 hm5C_associated_SNPs_79659 0 0 0 0 1 AFF1 chr4:88047488 5'GT 88047488 Upstream 22bp
chr5 50683348 50683348 1 + G A DLBC 50683345 + 50683325 50683365 41 TTGTACGGGATCAAATGCGCCAAGTGCAGCATCGGCTTCAG TTGTACGGGATCAAATGCGCCAAATGCAGCATCGGCTTCAG < 41bp 0.723149247180821 0.489100882906718 0.25334814 0.11494321 prediction 0.446298494361641 Functional Loss - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50683345 chr5:50683348 synonymous SNV . 0 24 hm5C_associated_SNPs_79662 0 0 0 0 1 ISL1 chr5:50683324 3'AG 50683324 Downstream 25bp
chr3 36485125 36485125 1 + G A SKCM 36485122 + 36485102 36485142 41 TTCTGTGATGTCTGCAACCACATGATAGTGGGTAAGGCCTC TTCTGTGATGTCTGCAACCACATAATAGTGGGTAAGGCCTC < 41bp 0.778580289302447 0.555431723775161 0.4317233 0.3706448 prediction 0.446297131054572 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36485122 chr3:36485125 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_79663 0 0 0 0 1 STAC chr3:36485132 5'GT 36485132 Upstream 8bp
chr15 32983916 32983916 1 + G T UCEC 32983913 + 32983893 32983933 41 CTTTTCTCCCCATTCTAGAACAAGAAACTCCTTTACGAGAA CTTTTCTCCCCATTCTAGAACAATAAACTCCTTTACGAGAA < 41bp 0.723142010108131 0.339349671750041 0.3734054 0.13922906 prediction 0.446284020216263 Functional Loss - SCG5 ENSG00000166922 CDS Human protein_coding chr15:32983913 chr15:32983916 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_79667 0 0 1 0 1 SCG5 chr15:32983911 3'AG 32983911 Downstream 6bp
chr14 94467592 94467592 1 + G A COAD 94467589 + 94467569 94467609 41 GCCAGGACACGCAGAAGCGCCTCGAGGCCTTCTGCCAGATG GCCAGGACACGCAGAAGCGCCTCAAGGCCTTCTGCCAGATG < 41bp 0.744614705664489 0.521473558761196 0.81187 0.26082253 prediction 0.446282293806584 Functional Loss - C14orf48 ENSG00000175699 ncRNA_exonic Human protein_coding chr14:94467589 chr14:94467592 . . 0 24 hm5C_associated_SNPs_79669 0 0 0 0 2 C14orf48 chr14:94467665 5'GT 94467665 Upstream 74bp
chr14 94467592 94467592 1 + G A COAD 94467589 + 94467569 94467609 41 GCCAGGACACGCAGAAGCGCCTCGAGGCCTTCTGCCAGATG GCCAGGACACGCAGAAGCGCCTCAAGGCCTTCTGCCAGATG < 41bp 0.744614705664489 0.521473558761196 0.81187 0.26082253 prediction 0.446282293806584 Functional Loss - C14orf48 ENSG00000175699 ncRNA_exonic Human protein_coding chr14:94467589 chr14:94467592 . . 0 24 hm5C_associated_SNPs_79669 0 0 0 0 2 C14orf48 chr14:94467669 5'GT 94467669 Upstream 78bp
chr3 49293631 49293631 1 + A C STAD 49293627 + 49293607 49293647 41 ACCTTGAAGTTTTAGTTGCTCAGCAGAGTCAGGAATTCCAG ACCTTGAAGTTTTAGTTGCTCAGCCGAGTCAGGAATTCCAG < 41bp 0.72313584142441 0.316059878663318 0.42720187 0.33940393 prediction 0.44627168284882 Functional Loss - CCDC36 ENSG00000173421 CDS Human protein_coding chr3:49293627 chr3:49293631 nonsynonymous SNV 0.961 3 25 hm5C_associated_SNPs_79672 0 0 0 0 1 CCDC36 chr3:49293567 3'AG 49293567 Downstream 65bp
chr20 9417782 9417782 1 + G T LUAD 9417779 + 9417759 9417799 41 CACCACGGCTGCCCTGGCCTCTGGTGTGGAAGCCAAGAAAG CACCACGGCTGCCCTGGCCTCTGTTGTGGAAGCCAAGAAAG < 41bp 0.723123973116565 0.342016294317885 0.76251477 0.33996484 prediction 0.446247946233129 Functional Loss - PLCB4 ENSG00000101333 CDS Human protein_coding chr20:9417779 chr20:9417782 nonsynonymous SNV 0.971 1 24 hm5C_associated_SNPs_79678 0 0 0 0 1 PLCB4 chr20:9417799 5'GT 9417799 Upstream 18bp
chr12 121434170 121434170 1 + C T LGG 121434168 + 121434148 121434188 41 CCCCTCCACCAAGTGTCCCCCACGGGCCTGGAGCCCAGCCA CCCCTCCACCAAGTGTCCCCCATGGGCCTGGAGCCCAGCCA < 41bp 0.72312164446887 0.463474364537575 0.23930895 0.18958107 prediction 0.446243288937739 Functional Loss - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121434168 chr12:121434170 nonsynonymous SNV 0.933 3 23 hm5C_associated_SNPs_79679 0 0 1 0 1 HNF1A chr12:121434216 5'GT 121434216 Upstream 47bp
chr12 121434171 121434171 1 + G A LUSC 121434168 + 121434148 121434188 41 CCCCTCCACCAAGTGTCCCCCACGGGCCTGGAGCCCAGCCA CCCCTCCACCAAGTGTCCCCCACAGGCCTGGAGCCCAGCCA < 41bp 0.72312164446887 0.479120232596974 0.23930895 0.06336686 prediction 0.446243288937739 Functional Loss - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121434168 chr12:121434171 synonymous SNV . 0 24 hm5C_associated_SNPs_79680 0 0 1 0 1 HNF1A chr12:121434216 5'GT 121434216 Upstream 46bp
chr19 50203982 50203982 1 + C T CESC 50203980 + 50203960 50204000 41 CTCCGGGGGGTCCTGGCAGCCGCGCTGTTTGCCTCGTGTTT CTCCGGGGGGTCCTGGCAGCCGTGCTGTTTGCCTCGTGTTT < 41bp 0.723117349910272 0.464387421908999 0.16292766 0.15742391 prediction 0.446234699820545 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50203980 chr19:50203982 nonsynonymous SNV 0.005 0 23 hm5C_associated_SNPs_79683 0 0 0 0 1 CPT1C chr19:50203941 3'AG 50203941 Downstream 42bp
chr13 96438249 96438249 1 + G T UCEC 96438246 + 96438226 96438266 41 ATGAAAATGATCAGCAGATTCGAGAAGGTCTAGAGAAAGCA ATGAAAATGATCAGCAGATTCGATAAGGTCTAGAGAAAGCA < 41bp 0.723100961510593 0.354661046677192 0.6626748 0.20162958 prediction 0.446201923021187 Functional Loss - DNAJC3 ENSG00000102580 CDS Human protein_coding chr13:96438246 chr13:96438249 stopgain 1.000 1 24 hm5C_associated_SNPs_79691 0 0 1 0 2 DNAJC3 chr13:96438193 3'AG 96438193 Downstream 57bp
chr13 96438249 96438249 1 + G T UCEC 96438246 + 96438226 96438266 41 ATGAAAATGATCAGCAGATTCGAGAAGGTCTAGAGAAAGCA ATGAAAATGATCAGCAGATTCGATAAGGTCTAGAGAAAGCA < 41bp 0.723100961510593 0.354661046677192 0.6626748 0.20162958 prediction 0.446201923021187 Functional Loss - DNAJC3 ENSG00000102580 CDS Human protein_coding chr13:96438246 chr13:96438249 stopgain 1.000 1 24 hm5C_associated_SNPs_79691 0 0 1 0 2 DNAJC3 chr13:96438325 5'GT 96438325 Upstream 77bp
chr10 134014424 134014424 1 + G A CESC 134014421 + 134014401 134014441 41 GCTGTGGGCAAGGACAACTTCGCGCTGATCCCCGAGGGCAC GCTGTGGGCAAGGACAACTTCGCACTGATCCCCGAGGGCAC < 41bp 0.801156000343894 0.578057506033502 0.23404792 0.10095623 prediction 0.446196988620783 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134014421 chr10:134014424 synonymous SNV . 0 24 hm5C_associated_SNPs_79693 0 0 1 0 2 DPYSL4 chr10:134014346 3'AG 134014346 Downstream 79bp
chr10 134014424 134014424 1 + G A CESC 134014421 + 134014401 134014441 41 GCTGTGGGCAAGGACAACTTCGCGCTGATCCCCGAGGGCAC GCTGTGGGCAAGGACAACTTCGCACTGATCCCCGAGGGCAC < 41bp 0.801156000343894 0.578057506033502 0.23404792 0.10095623 prediction 0.446196988620783 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134014421 chr10:134014424 synonymous SNV . 0 24 hm5C_associated_SNPs_79693 0 0 1 0 2 DPYSL4 chr10:134014487 5'GT 134014487 Upstream 64bp
chr17 79206292 79206292 1 - T G MESO 79206293 - 79206273 79206313 41 GCAGGCGAAGCCTTCCTCTCCACCATCCAGAAGGCCGCAGA GCAGGCGAAGCCTTCCTCTCCCCCATCCAGAAGGCCGCAGA < 41bp 0.790907393360752 0.567809067749245 0.34958345 0.42921928 prediction 0.446196651223014 Functional Loss - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79206293 chr17:79206292 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_79694 0 0 0 0 1 TEPSIN chr17:79206318 3'AG 79206318 Downstream 27bp
chr16 56870627 56870627 1 + A C rs199678770 56870626 + 56870606 56870646 41 GCAAAGCTGTATGACCTTGCCAAGGTAAAGTGTGCCCACTT GCAAAGCTGTATGACCTTGCCCAGGTAAAGTGTGCCCACTT < 41bp 0.723097288271791 0.454446415067426 0.88743675 0.50641197 prediction 0.446194576543581 Functional Loss - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56870626 chr16:56870627 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_79695 0 0 1 0 1 NUP93 chr16:56870629 5'GT 56870629 Upstream 3bp
chr19 38817577 38817577 1 + G A rs35331715 38817574 + 38817554 38817594 41 TCGGCCTGGGCGACTACGTGCCCGGGGAGGCCCCTGGCCAG TCGGCCTGGGCGACTACGTGCCCAGGGAGGCCCCTGGCCAG < 41bp 0.80838308492563 0.585286604501138 0.2683664 0.11257228 prediction 0.446192960848984 Functional Loss - KCNK6 ENSG00000099337 CDS Human protein_coding chr19:38817574 chr19:38817577 nonsynonymous SNV 0.054 4 24 hm5C_associated_SNPs_79696 0 0 0 0 1 KCNK6 chr19:38817628 5'GT 38817628 Upstream 52bp
chr19 1043061 1043061 1 + G T LUSC 1043058 + 1043038 1043078 41 AGCTCCTGGCGCTGCGCAGCCTGGTGGAGCTTCGGGCACTG AGCTCCTGGCGCTGCGCAGCCTGTTGGAGCTTCGGGCACTG < 41bp 0.723093161446873 0.329400010199729 0.7091441 0.33483368 prediction 0.446186322893745 Functional Loss - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1043058 chr19:1043061 nonsynonymous SNV 0.080 1 24 hm5C_associated_SNPs_79698 0 0 1 0 1 ABCA7 chr19:1043040 3'AG 1043040 Downstream 22bp
chr5 140032679 140032679 1 + G A UCEC 140032676 + 140032656 140032696 41 AACAAAGATTATGAAGAAACCGAGCTTATCAGCACCACAGC AACAAAGATTATGAAGAAACCGAACTTATCAGCACCACAGC < 41bp 0.723088491072423 0.48197442688392 0.18043122 0.044605553 prediction 0.446176982144847 Functional Loss - IK ENSG00000113141 CDS Human protein_coding chr5:140032676 chr5:140032679 synonymous SNV . 0 24 hm5C_associated_SNPs_79699 0 0 1 0 1 IK chr5:140032729 5'GT 140032729 Upstream 51bp
chr19 41622101 41622101 1 + G T UCEC 41622099 + 41622079 41622119 41 GCAGCTGCCTTCACCATGGACAGCATAAGCACAGCCATCTT GCAGCTGCCTTCACCATGGACATCATAAGCACAGCCATCTT < 41bp 0.723084965581632 0.37649407900392 0.012749046 0.012945175 prediction 0.446169931163264 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41622099 chr19:41622101 nonsynonymous SNV 0.036 0 23 hm5C_associated_SNPs_79701 0 0 0 1 2 CYP2F1 chr19:41622080 3'AG 41622080 Downstream 22bp
chr19 41622101 41622101 1 + G T UCEC 41622099 + 41622079 41622119 41 GCAGCTGCCTTCACCATGGACAGCATAAGCACAGCCATCTT GCAGCTGCCTTCACCATGGACATCATAAGCACAGCCATCTT < 41bp 0.723084965581632 0.37649407900392 0.012749046 0.012945175 prediction 0.446169931163264 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41622099 chr19:41622101 nonsynonymous SNV 0.036 0 23 hm5C_associated_SNPs_79701 0 0 0 1 2 CYP2F1 chr19:41622083 3'AG 41622083 Downstream 19bp
chr8 121021282 121021282 1 + G A GBM 121021279 + 121021259 121021299 41 CCTCTCTAGATTGTTGGTGACGCGGTTGGCTGGGGTTTTGT CCTCTCTAGATTGTTGGTGACGCAGTTGGCTGGGGTTTTGT < 41bp 0.723083999191041 0.48734643163436 0.6309732 0.2558266 prediction 0.446167998382082 Functional Loss - DEPTOR ENSG00000155792 CDS Human protein_coding chr8:121021279 chr8:121021282 synonymous SNV . 0 24 hm5C_associated_SNPs_79703 0 0 0 0 2 DEPTOR chr8:121021268 3'AG 121021268 Downstream 15bp
chr8 121021282 121021282 1 + G A GBM 121021279 + 121021259 121021299 41 CCTCTCTAGATTGTTGGTGACGCGGTTGGCTGGGGTTTTGT CCTCTCTAGATTGTTGGTGACGCAGTTGGCTGGGGTTTTGT < 41bp 0.723083999191041 0.48734643163436 0.6309732 0.2558266 prediction 0.446167998382082 Functional Loss - DEPTOR ENSG00000155792 CDS Human protein_coding chr8:121021279 chr8:121021282 synonymous SNV . 0 24 hm5C_associated_SNPs_79703 0 0 0 0 2 DEPTOR chr8:121021372 5'GT 121021372 Upstream 91bp
chr8 121021281 121021281 1 + C T UCEC 121021279 + 121021259 121021299 41 CCTCTCTAGATTGTTGGTGACGCGGTTGGCTGGGGTTTTGT CCTCTCTAGATTGTTGGTGACGTGGTTGGCTGGGGTTTTGT < 41bp 0.723083999191041 0.437040506382883 0.6309732 0.54356885 prediction 0.446167998382082 Functional Loss - DEPTOR ENSG00000155792 CDS Human protein_coding chr8:121021279 chr8:121021281 nonsynonymous SNV 0.837 2 23 hm5C_associated_SNPs_79704 0 0 0 0 2 DEPTOR chr8:121021268 3'AG 121021268 Downstream 14bp
chr8 121021281 121021281 1 + C T UCEC 121021279 + 121021259 121021299 41 CCTCTCTAGATTGTTGGTGACGCGGTTGGCTGGGGTTTTGT CCTCTCTAGATTGTTGGTGACGTGGTTGGCTGGGGTTTTGT < 41bp 0.723083999191041 0.437040506382883 0.6309732 0.54356885 prediction 0.446167998382082 Functional Loss - DEPTOR ENSG00000155792 CDS Human protein_coding chr8:121021279 chr8:121021281 nonsynonymous SNV 0.837 2 23 hm5C_associated_SNPs_79704 0 0 0 0 2 DEPTOR chr8:121021372 5'GT 121021372 Upstream 92bp
chr4 1807586 1807586 1 + C T GBM 1807584 + 1807564 1807604 41 CCTTCGACACCTGCAAGCCGCCCGAGGAGCAGCTCACCTTC CCTTCGACACCTGCAAGCCGCCTGAGGAGCAGCTCACCTTC < 41bp 0.723080759615984 0.448984851892635 0.13662034 0.2316713 prediction 0.446161519231968 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1807584 chr4:1807586 synonymous SNV . 0 23 hm5C_associated_SNPs_79706 0 0 1 0 1 FGFR3 chr4:1807667 5'GT 1807667 Upstream 82bp
chr6 26501897 26501897 1 + T C rs1321479 26501896 + 26501876 26501916 41 CGAGCTGCCCTGTCGCCTGTCTCCGAACGCGAGCGCCGAGC CGAGCTGCCCTGTCGCCTGTCCCCGAACGCGAGCGCCGAGC < 41bp 0.723078309614753 0.475609774941184 0.92770135 0.33976725 prediction 0.446156619229507 Functional Loss - BTN1A1 ENSG00000124557 CDS Human protein_coding chr6:26501896 chr6:26501897 synonymous SNV . 0 22 hm5C_associated_SNPs_79709 0 0 0 0 1 BTN1A1 chr6:26501818 3'AG 26501818 Downstream 80bp
chr6 26501898 26501898 1 + C T SKCM 26501896 + 26501876 26501916 41 CGAGCTGCCCTGTCGCCTGTCTCCGAACGCGAGCGCCGAGC CGAGCTGCCCTGTCGCCTGTCTTCGAACGCGAGCGCCGAGC < 41bp 0.723078309614753 0.461837254421972 0.92770135 0.67420787 prediction 0.446156619229507 Functional Loss - BTN1A1 ENSG00000124557 CDS Human protein_coding chr6:26501896 chr6:26501898 nonsynonymous SNV 0.019 2 23 hm5C_associated_SNPs_79710 0 0 0 0 1 BTN1A1 chr6:26501818 3'AG 26501818 Downstream 81bp
chr4 119621742 119621742 1 + G A UCEC 119621739 + 119621719 119621759 41 AATTGATGAGATTGCAGCACCTCGATCATTTATTTTTCTCT AATTGATGAGATTGCAGCACCTCAATCATTTATTTTTCTCT < 41bp 0.751580002814271 0.528503462703409 0.78107476 0.82646513 prediction 0.446153080221724 Functional Loss - METTL14 ENSG00000145388 CDS Human protein_coding chr4:119621739 chr4:119621742 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_79711 0 0 1 0 2 METTL14 chr4:119621705 3'AG 119621705 Downstream 38bp
chr4 119621742 119621742 1 + G A UCEC 119621739 + 119621719 119621759 41 AATTGATGAGATTGCAGCACCTCGATCATTTATTTTTCTCT AATTGATGAGATTGCAGCACCTCAATCATTTATTTTTCTCT < 41bp 0.751580002814271 0.528503462703409 0.78107476 0.82646513 prediction 0.446153080221724 Functional Loss - METTL14 ENSG00000145388 CDS Human protein_coding chr4:119621739 chr4:119621742 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_79711 0 0 1 0 2 METTL14 chr4:119621797 5'GT 119621797 Upstream 56bp
chr8 94713595 94713595 1 + C T STAD 94713593 + 94713573 94713613 41 CTCCTGGTGAATGAAATTAACGCGTATGCTGCTACAGAGAC CTCCTGGTGAATGAAATTAACGTGTATGCTGCTACAGAGAC < 41bp 0.825536116324811 0.602462927513399 0.0481337 0.075690866 prediction 0.446146377622824 Functional Loss - FAM92A ENSG00000188343 CDS Human protein_coding chr8:94713593 chr8:94713595 nonsynonymous SNV 0.229 0 23 hm5C_associated_SNPs_79714 0 0 1 8 1 FAM92A chr8:94713686 5'GT 94713686 Upstream 92bp
chr11 119052898 119052898 1 + C T PRAD 119052896 + 119052876 119052916 41 ACGCACCTGTCCCTGCTGCACACGGGCCTTGGGGACGAAGG ACGCACCTGTCCCTGCTGCACATGGGCCTTGGGGACGAAGG < 41bp 0.723072862816262 0.460639453685483 0.23503745 0.24473763 prediction 0.446145725632523 Functional Loss - NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119052896 chr11:119052898 nonsynonymous SNV 0.987 3 23 hm5C_associated_SNPs_79715 0 0 1 0 1 NLRX1 chr11:119052803 3'AG 119052803 Downstream 96bp
chr19 55045004 55045004 1 + G A SKCM 55045001 + 55044981 55045021 41 GGCCGAGCCCTGTGGTTCCCCTAGGAGGACGTGTGACTCTC GGCCGAGCCCTGTGGTTCCCCTAAGAGGACGTGTGACTCTC < 41bp 0.791966260741457 0.568894319978515 0.2638427 0.113755435 prediction 0.446143881525885 Functional Loss - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55045001 chr19:55045004 nonsynonymous SNV 0.119 0 24 hm5C_associated_SNPs_79716 0 0 0 1 1 KIR3DX1 chr19:55044951 3'AG 55044951 Downstream 54bp
chr16 69968028 69968028 1 + C T UCEC 69968026 + 69968006 69968046 41 CGCTTTATAGGCAGATTCATCGCCATGGTAAGGGGGCCCCA CGCTTTATAGGCAGATTCATCGTCATGGTAAGGGGGCCCCA < 41bp 0.847877951413606 0.624807927147105 0.40765458 0.14273569 prediction 0.446140048533001 Functional Loss - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69968026 chr16:69968028 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_79718 0 0 1 0 1 WWP2 chr16:69968032 5'GT 69968032 Upstream 5bp
chr6 88127960 88127960 1 + C T HNSC 88127957 + 88127937 88127977 41 CTCCATGTAGCAATCCCAGCCACCATGCAGCATATTGATTA CTCCATGTAGCAATCCCAGCCACTATGCAGCATATTGATTA < 41bp 0.723068232136517 0.494203430371348 0.0115300715 0.026085466 prediction 0.446136464273034 Functional Loss - CFAP206 ENSG00000213204;ENSG00000272514 CDS Human other chr6:88127957 chr6:88127960 synonymous SNV . 0 24 hm5C_associated_SNPs_79721 0 0 0 0 1 CFAP206 chr6:88127926 3'AG 88127926 Downstream 35bp
chr6 161152809 161152809 1 + G A SKCM 161152806 + 161152786 161152826 41 TTGGGAATGGGAAAGGATACCGAGGCAAGAGGGCGACCACT TTGGGAATGGGAAAGGATACCGAAGCAAGAGGGCGACCACT < 41bp 0.788678898908069 0.565611792134703 0.72581244 0.30589044 prediction 0.446134213546732 Functional Loss - PLG ENSG00000122194 CDS Human protein_coding chr6:161152806 chr6:161152809 nonsynonymous SNV 0.126 4 24 hm5C_associated_SNPs_79722 0 0 0 0 1 PLG chr6:161152777 3'AG 161152777 Downstream 33bp
chr4 74735480 74735480 1 + C T PRAD 74735478 + 74735458 74735498 41 AAAGTGTGAACGTGAAGTCCCCCGGACCCCACTGCGCCCAA AAAGTGTGAACGTGAAGTCCCCTGGACCCCACTGCGCCCAA < 41bp 0.805277707301812 0.58221121890743 0.13870525 0.18814489 prediction 0.446132976788764 Functional Loss - CXCL1 ENSG00000163739 CDS Human protein_coding chr4:74735478 chr4:74735480 synonymous SNV . 0 23 hm5C_associated_SNPs_79723 0 0 1 0 2 CXCL1 chr4:74735386 3'AG 74735386 Downstream 95bp
chr4 74735480 74735480 1 + C T PRAD 74735478 + 74735458 74735498 41 AAAGTGTGAACGTGAAGTCCCCCGGACCCCACTGCGCCCAA AAAGTGTGAACGTGAAGTCCCCTGGACCCCACTGCGCCCAA < 41bp 0.805277707301812 0.58221121890743 0.13870525 0.18814489 prediction 0.446132976788764 Functional Loss - CXCL1 ENSG00000163739 CDS Human protein_coding chr4:74735478 chr4:74735480 synonymous SNV . 0 23 hm5C_associated_SNPs_79723 0 0 1 0 2 CXCL1 chr4:74735509 5'GT 74735509 Upstream 30bp
chr11 68682320 68682320 1 + C T rs76707931 68682317 + 68682297 68682337 41 TGCTGCGCCCCCTCCAACATCGCCGTGGACAATCTGGTGGA TGCTGCGCCCCCTCCAACATCGCTGTGGACAATCTGGTGGA < 41bp 0.723787094649552 0.50072302081321 0.48205033 0.28259033 prediction 0.446128147672686 Functional Loss - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68682317 chr11:68682320 synonymous SNV . 0 24 hm5C_associated_SNPs_79724 2 0 1 1 1 IGHMBP2 chr11:68682291 3'AG 68682291 Downstream 30bp
chr11 46329438 46329438 1 + G C CESC 46329434 + 46329414 46329454 41 ATGGTGAAGCAGGAGCAGAGCCCGGAGCTGCCCGTGGACCC ATGGTGAAGCAGGAGCAGAGCCCGCAGCTGCCCGTGGACCC < 41bp 0.723059183102502 0.429630667031891 0.8859861 0.45200676 prediction 0.446118366205003 Functional Loss - CREB3L1 ENSG00000157613 CDS Human protein_coding chr11:46329434 chr11:46329438 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_79726 0 0 0 0 1 CREB3L1 chr11:46329367 3'AG 46329367 Downstream 72bp
chr17 7189832 7189832 1 + C T HNSC 7189830 + 7189810 7189850 41 CTTCTTAAGAGTACCTGAAACTCGAGGCCGGACGTTTGACC CTTCTTAAGAGTACCTGAAACTTGAGGCCGGACGTTTGACC < 41bp 0.851898271665822 0.628840243168054 0.19696873 0.16810995 prediction 0.446116056995537 Functional Loss - SLC2A4 ENSG00000181856 CDS Human protein_coding chr17:7189830 chr17:7189832 stopgain 0.998 1 23 hm5C_associated_SNPs_79728 0 0 0 0 1 SLC2A4 chr17:7189745 3'AG 7189745 Downstream 88bp
chr12 668556 668556 1 + T C ESCA 668555 + 668535 668575 41 ACCAAGGAGTTCCGAGACCGCTGGGGCGGGGAAGACTGGGA ACCAAGGAGTTCCGAGACCGCCGGGGCGGGGAAGACTGGGA < 41bp 0.78687777292575 0.563821376630411 0.41356725 0.89278364 prediction 0.446112792590677 Functional Loss - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:668555 chr12:668556 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_79729 0 0 0 0 2 B4GALNT3 chr12:668461 3'AG 668461 Downstream 96bp
chr12 668556 668556 1 + T C ESCA 668555 + 668535 668575 41 ACCAAGGAGTTCCGAGACCGCTGGGGCGGGGAAGACTGGGA ACCAAGGAGTTCCGAGACCGCCGGGGCGGGGAAGACTGGGA < 41bp 0.78687777292575 0.563821376630411 0.41356725 0.89278364 prediction 0.446112792590677 Functional Loss - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:668555 chr12:668556 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_79729 0 0 0 0 2 B4GALNT3 chr12:668587 5'GT 668587 Upstream 32bp
chr8 124449545 124449545 1 + C T STAD 124449542 + 124449522 124449562 41 CAGTGGGAATTGGAGAGAGCCTCCGCCGCCATATCCCTGCA CAGTGGGAATTGGAGAGAGCCTCTGCCGCCATATCCCTGCA < 41bp 0.739220878996234 0.516165296096432 0.046838284 0.04791981 prediction 0.446111165799602 Functional Loss - WDYHV1 ENSG00000156795 CDS Human protein_coding chr8:124449542 chr8:124449545 nonsynonymous SNV 0.540 2 24 hm5C_associated_SNPs_79730 0 0 1 0 2 WDYHV1 chr8:124449450 3'AG 124449450 Downstream 96bp
chr8 124449545 124449545 1 + C T STAD 124449542 + 124449522 124449562 41 CAGTGGGAATTGGAGAGAGCCTCCGCCGCCATATCCCTGCA CAGTGGGAATTGGAGAGAGCCTCTGCCGCCATATCCCTGCA < 41bp 0.739220878996234 0.516165296096432 0.046838284 0.04791981 prediction 0.446111165799602 Functional Loss - WDYHV1 ENSG00000156795 CDS Human protein_coding chr8:124449542 chr8:124449545 nonsynonymous SNV 0.540 2 24 hm5C_associated_SNPs_79730 0 0 1 0 2 WDYHV1 chr8:124449574 5'GT 124449574 Upstream 30bp
chr5 6753081 6753081 1 + C T ACC 6753079 + 6753059 6753099 41 CTGCGTCTTTGAAAGCCGTCCACCACATGTCTTCCCCGGCC CTGCGTCTTTGAAAGCCGTCCATCACATGTCTTCCCCGGCC < 41bp 0.723052888368243 0.426512705022497 0.044208884 0.10056919 prediction 0.446105776736486 Functional Loss - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6753079 chr5:6753081 synonymous SNV . 0 23 hm5C_associated_SNPs_79731 0 0 1 0 2 PAPD7 chr5:6752986 3'AG 6752986 Downstream 96bp
chr5 6753081 6753081 1 + C T ACC 6753079 + 6753059 6753099 41 CTGCGTCTTTGAAAGCCGTCCACCACATGTCTTCCCCGGCC CTGCGTCTTTGAAAGCCGTCCATCACATGTCTTCCCCGGCC < 41bp 0.723052888368243 0.426512705022497 0.044208884 0.10056919 prediction 0.446105776736486 Functional Loss - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6753079 chr5:6753081 synonymous SNV . 0 23 hm5C_associated_SNPs_79731 0 0 1 0 2 PAPD7 chr5:6753150 5'GT 6753150 Upstream 70bp
chr17 79970071 79970071 1 + G A LUSC 79970068 + 79970048 79970088 41 GCGCATGGATGGGCGAGGTCCACGGTGCTTCCTAACACGTA GCGCATGGATGGGCGAGGTCCACAGTGCTTCCTAACACGTA < 41bp 0.723052343073176 0.478927434718992 0.31680346 0.21225742 prediction 0.446104686146352 Functional Loss - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79970068 chr17:79970071 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_79732 0 0 1 0 2 ASPSCR1 chr17:79970032 3'AG 79970032 Downstream 40bp
chr17 79970071 79970071 1 + G A LUSC 79970068 + 79970048 79970088 41 GCGCATGGATGGGCGAGGTCCACGGTGCTTCCTAACACGTA GCGCATGGATGGGCGAGGTCCACAGTGCTTCCTAACACGTA < 41bp 0.723052343073176 0.478927434718992 0.31680346 0.21225742 prediction 0.446104686146352 Functional Loss - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79970068 chr17:79970071 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_79732 0 0 1 0 2 ASPSCR1 chr17:79970159 5'GT 79970159 Upstream 89bp
chr17 79970070 79970070 1 + C T LUSC 79970068 + 79970048 79970088 41 GCGCATGGATGGGCGAGGTCCACGGTGCTTCCTAACACGTA GCGCATGGATGGGCGAGGTCCATGGTGCTTCCTAACACGTA < 41bp 0.723052343073176 0.485567849822813 0.31680346 0.20309591 prediction 0.446104686146352 Functional Loss - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79970068 chr17:79970070 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_79733 0 0 1 0 2 ASPSCR1 chr17:79970032 3'AG 79970032 Downstream 39bp
chr17 79970070 79970070 1 + C T LUSC 79970068 + 79970048 79970088 41 GCGCATGGATGGGCGAGGTCCACGGTGCTTCCTAACACGTA GCGCATGGATGGGCGAGGTCCATGGTGCTTCCTAACACGTA < 41bp 0.723052343073176 0.485567849822813 0.31680346 0.20309591 prediction 0.446104686146352 Functional Loss - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79970068 chr17:79970070 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_79733 0 0 1 0 2 ASPSCR1 chr17:79970159 5'GT 79970159 Upstream 90bp
chr19 18960951 18960951 1 + G A SKCM 18960948 + 18960928 18960968 41 CCCTGCACAAGGACGGGCCCCTGGGGGAGACAGTCCTGGAG CCCTGCACAAGGACGGGCCCCTGAGGGAGACAGTCCTGGAG < 41bp 0.792394532202163 0.569351494478408 0.89175564 0.34155083 prediction 0.44608607544751 Functional Loss - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18960948 chr19:18960951 nonsynonymous SNV 0.992 5 24 hm5C_associated_SNPs_79737 0 0 1 0 1 UPF1 chr19:18960884 3'AG 18960884 Downstream 68bp
chr8 24171052 24171052 1 + G A UCEC 24171049 + 24171029 24171069 41 TGGATGGTGTGTTGTGGGCCCACGATTTGCAGCAGAACATT TGGATGGTGTGTTGTGGGCCCACAATTTGCAGCAGAACATT < 41bp 0.76757831786445 0.544538253465637 0.23826277 0.22427708 prediction 0.446080128797627 Functional Loss - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24171049 chr8:24171052 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_79738 0 0 0 0 1 ADAM28 chr8:24171093 5'GT 24171093 Upstream 42bp
chr19 852912 852912 1 + G C BLCA 852911 + 852891 852931 41 CGGAGATTGTGGGGGGCCGGCGAGCGCGGCCCCACGCGTGG CGGAGATTGTGGGGGGCCGGCCAGCGCGGCCCCACGCGTGG < 41bp 0.876487688341919 0.653448512482594 0.8537072 0.7564453 prediction 0.446078351718651 Functional Loss - ELANE ENSG00000197561 CDS Human protein_coding chr19:852911 chr19:852912 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_79739 0 0 0 0 1 ELANE chr19:852876 3'AG 852876 Downstream 37bp
chr19 50905180 50905180 1 + T C UCEC 50905179 + 50905159 50905199 41 CTTCTACACCCCAGCGCCCCCTGGTGAGTGGCCCCTACCCA CTTCTACACCCCAGCGCCCCCCGGTGAGTGGCCCCTACCCA < 41bp 0.754511762956543 0.531475368067197 0.13702732 0.37684026 prediction 0.446072789778692 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905179 chr19:50905180 synonymous SNV . 0 22 hm5C_associated_SNPs_79742 0 0 1 0 1 POLD1 chr19:50905181 5'GT 50905181 Upstream 2bp
chr10 135122932 135122932 1 + G T LUAD 135122929 + 135122909 135122949 41 CGCCACCTCTACCTCCAGGACGTGATCATGCAGGTGGCCGA CGCCACCTCTACCTCCAGGACGTTATCATGCAGGTGGCCGA < 41bp 0.723034379987354 0.420394097009771 0.131329 0.0603832 prediction 0.446068759974707 Functional Loss - ZNF511 ENSG00000198546 CDS Human protein_coding chr10:135122929 chr10:135122932 synonymous SNV . 0 24 hm5C_associated_SNPs_79744 0 0 1 0 1 ZNF511 chr10:135122967 5'GT 135122967 Upstream 36bp
chr17 76167650 76167650 1 + A C UCEC 76167649 + 76167629 76167669 41 CTCACCAACCAGTGGGCAGTCACCAACCCGAAGGACGTGCT CTCACCAACCAGTGGGCAGTCCCCAACCCGAAGGACGTGCT < 41bp 0.814520937451098 0.5914892012199 0.5723194 0.2550094 prediction 0.446063472462397 Functional Loss - SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167649 chr17:76167650 nonsynonymous SNV 0.064 4 22 hm5C_associated_SNPs_79746 0 0 1 0 2 SYNGR2 chr17:76167591 3'AG 76167591 Downstream 60bp
chr17 76167650 76167650 1 + A C UCEC 76167649 + 76167629 76167669 41 CTCACCAACCAGTGGGCAGTCACCAACCCGAAGGACGTGCT CTCACCAACCAGTGGGCAGTCCCCAACCCGAAGGACGTGCT < 41bp 0.814520937451098 0.5914892012199 0.5723194 0.2550094 prediction 0.446063472462397 Functional Loss - SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167649 chr17:76167650 nonsynonymous SNV 0.064 4 22 hm5C_associated_SNPs_79746 0 0 1 0 2 SYNGR2 chr17:76167730 5'GT 76167730 Upstream 81bp
chr5 32594752 32594752 1 + C T rs12653236 32594750 + 32594730 32594770 41 TGTGTGAGTGAACATTGCAGCCCGAGCTCTGCCTCCTGTCA TGTGTGAGTGAACATTGCAGCCTGAGCTCTGCCTCCTGTCA < 41bp 0.777599138828721 0.554569012541267 0.10980898 0.05426097 prediction 0.446060252574908 Functional Loss - SUB1 ENSG00000113387 UTR3 Human protein_coding chr5:32594750 chr5:32594752 . . 0 23 hm5C_associated_SNPs_79748 0 0 1 0 1 SUB1 chr5:32594677 3'AG 32594677 Downstream 76bp
chr19 49671839 49671839 1 + C T UCEC 49671837 + 49671817 49671857 41 TCCCTGCGAGGTACCGGTGGCGCGGTGACCCGGAGGACGGG TCCCTGCGAGGTACCGGTGGCGTGGTGACCCGGAGGACGGG < 41bp 0.723027894754301 0.463465090105308 0.8175845 0.6458427 prediction 0.446055789508601 Functional Loss - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49671837 chr19:49671839 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_79749 0 0 1 0 1 TRPM4 chr19:49671810 3'AG 49671810 Downstream 30bp
chrX 3021840 3021840 1 + C T COAD 3021838 + 3021818 3021858 41 GGGGCTGGGAAGGTGGAATCCGCGTCCCAGGAATTGTCCGA GGGGCTGGGAAGGTGGAATCCGTGTCCCAGGAATTGTCCGA < 41bp 0.723026073598587 0.434801541527531 0.4525642 0.28530073 prediction 0.446052147197173 Functional Loss - ARSF ENSG00000062096 CDS Human protein_coding chrX:3021838 chrX:3021840 synonymous SNV . 0 23 hm5C_associated_SNPs_79751 0 0 0 0 1 ARSF chrX:3021803 3'AG 3021803 Downstream 38bp
chrX 3021841 3021841 1 + G A GBM 3021838 + 3021818 3021858 41 GGGGCTGGGAAGGTGGAATCCGCGTCCCAGGAATTGTCCGA GGGGCTGGGAAGGTGGAATCCGCATCCCAGGAATTGTCCGA < 41bp 0.723026073598587 0.480854118879178 0.4525642 0.38111708 prediction 0.446052147197173 Functional Loss - ARSF ENSG00000062096 CDS Human protein_coding chrX:3021838 chrX:3021841 nonsynonymous SNV 0.038 2 24 hm5C_associated_SNPs_79752 0 0 0 0 1 ARSF chrX:3021803 3'AG 3021803 Downstream 39bp
chr9 139804381 139804381 1 + G A COAD 139804378 + 139804358 139804398 41 CCCTTCTTTTGAAGGCGCACCACGAGGTCTGCCCCAAGTTC CCCTTCTTTTGAAGGCGCACCACAAGGTCTGCCCCAAGTTC < 41bp 0.723022746876373 0.468537209967217 0.17237097 0.10462627 prediction 0.446045493752746 Functional Loss - TRAF2 ENSG00000127191 CDS Human protein_coding chr9:139804378 chr9:139804381 nonsynonymous SNV 0.726 1 24 hm5C_associated_SNPs_79756 0 0 1 0 1 TRAF2 chr9:139804372 3'AG 139804372 Downstream 10bp
chr9 139804380 139804380 1 + C T UCEC 139804378 + 139804358 139804398 41 CCCTTCTTTTGAAGGCGCACCACGAGGTCTGCCCCAAGTTC CCCTTCTTTTGAAGGCGCACCATGAGGTCTGCCCCAAGTTC < 41bp 0.723022746876373 0.450629895746794 0.17237097 0.15425521 prediction 0.446045493752746 Functional Loss - TRAF2 ENSG00000127191 CDS Human protein_coding chr9:139804378 chr9:139804380 synonymous SNV . 0 23 hm5C_associated_SNPs_79757 0 0 1 0 1 TRAF2 chr9:139804372 3'AG 139804372 Downstream 9bp
chr12 49948321 49948321 1 + G A SARC 49948318 + 49948298 49948338 41 GCTCAGCTACAACCTGGGTGCTGGGGGAGGCTCTGCAGAGG GCTCAGCTACAACCTGGGTGCTGAGGGAGGCTCTGCAGAGG < 41bp 0.788272000703548 0.565253286427138 0.8364609 0.74928606 prediction 0.44603742855282 Functional Loss - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49948318 chr12:49948321 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_79759 0 0 0 0 1 KCNH3 chr12:49948337 5'GT 49948337 Upstream 17bp
chr20 31877739 31877739 1 + G T HNSC 31877736 + 31877716 31877756 41 CTCCAGCTGCAGGTGAAGCCCTCGGCCAATGACCAGGAGCT CTCCAGCTGCAGGTGAAGCCCTCTGCCAATGACCAGGAGCT < 41bp 0.723017087531586 0.314807831151157 0.35875696 0.20799741 prediction 0.446034175063173 Functional Loss - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31877736 chr20:31877739 synonymous SNV . 0 24 hm5C_associated_SNPs_79762 0 0 0 0 2 BPIFB1 chr20:31877691 3'AG 31877691 Downstream 49bp
chr20 31877739 31877739 1 + G T HNSC 31877736 + 31877716 31877756 41 CTCCAGCTGCAGGTGAAGCCCTCGGCCAATGACCAGGAGCT CTCCAGCTGCAGGTGAAGCCCTCTGCCAATGACCAGGAGCT < 41bp 0.723017087531586 0.314807831151157 0.35875696 0.20799741 prediction 0.446034175063173 Functional Loss - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31877736 chr20:31877739 synonymous SNV . 0 24 hm5C_associated_SNPs_79762 0 0 0 0 2 BPIFB1 chr20:31877798 5'GT 31877798 Upstream 60bp
chr1 64114205 64114205 1 + G A BLCA 64114202 + 64114182 64114222 41 CTCCAGGTTCTGACCACATCCGTGAGAAAGATGGACTGTGG CTCCAGGTTCTGACCACATCCGTAAGAAAGATGGACTGTGG < 41bp 0.762495764181557 0.539483139670664 0.26779056 0.2162331 prediction 0.446025249021786 Functional Loss - PGM1 ENSG00000079739 CDS Human protein_coding chr1:64114202 chr1:64114205 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_79765 0 0 1 0 1 PGM1 chr1:64114188 3'AG 64114188 Downstream 18bp
chr11 118277757 118277757 1 + T C LIHC 118277756 + 118277736 118277776 41 TCCCTAGAGCTATTCAGAGCCTGAAAAAAATAGTCAATAGT TCCCTAGAGCTATTCAGAGCCCGAAAAAAATAGTCAATAGT < 41bp 0.723009780365895 0.474253177885687 0.09516126 0.1776267 prediction 0.44601956073179 Functional Loss - ATP5L ENSG00000167283 CDS Human protein_coding chr11:118277756 chr11:118277757 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_79767 0 0 1 0 1 ATP5L chr11:118277812 5'GT 118277812 Upstream 56bp
chr14 100610071 100610071 1 + C T UCEC 100610069 + 100610049 100610089 41 GAGCTGAGTGGGATCAGCACCACGTAAGGGGCCGGCCTCGC GAGCTGAGTGGGATCAGCACCATGTAAGGGGCCGGCCTCGC < 41bp 0.72300414412354 0.478693470121271 0.38020107 0.25927716 prediction 0.44600828824708 Functional Loss - EVL ENSG00000196405 CDS Human protein_coding chr14:100610069 chr14:100610071 nonsynonymous SNV 0.840 2 23 hm5C_associated_SNPs_79770 0 0 1 0 1 EVL chr14:100610038 3'AG 100610038 Downstream 34bp
chr11 3062129 3062129 1 - G A UCEC 3062131 - 3062111 3062151 41 GACGCATCTCACATGGGGCACGCCAGGTAGGTCCACCGCGG GACGCATCTCACATGGGGCACGTCAGGTAGGTCCACCGCGG < 41bp 0.832674309430031 0.609674267683803 0.0989199 0.185754 prediction 0.446000083492457 Functional Loss - CARS ENSG00000110619 CDS Human protein_coding chr11:3062131 chr11:3062129 nonsynonymous SNV 0.965 4 23 hm5C_associated_SNPs_79773 0 0 1 0 2 CARS chr11:3062126 5'GT 3062126 Upstream 4bp
chr11 3062129 3062129 1 - G A UCEC 3062131 - 3062111 3062151 41 GACGCATCTCACATGGGGCACGCCAGGTAGGTCCACCGCGG GACGCATCTCACATGGGGCACGTCAGGTAGGTCCACCGCGG < 41bp 0.832674309430031 0.609674267683803 0.0989199 0.185754 prediction 0.446000083492457 Functional Loss - CARS ENSG00000110619 CDS Human protein_coding chr11:3062131 chr11:3062129 nonsynonymous SNV 0.965 4 23 hm5C_associated_SNPs_79773 0 0 1 0 2 CARS chr11:3062214 3'AG 3062214 Downstream 86bp
chr12 123341225 123341225 1 + G A LUSC 123341222 + 123341202 123341242 41 CTCAAGAGGGAGCTGGAGGCCAAGGCCGGAGAGCTGGCCCG CTCAAGAGGGAGCTGGAGGCCAAAGCCGGAGAGCTGGCCCG < 41bp 0.790797832681574 0.56779873913625 0.8889427 0.8693168 prediction 0.445998187090648 Functional Loss - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123341222 chr12:123341225 synonymous SNV . 0 24 hm5C_associated_SNPs_79774 0 0 1 0 2 HIP1R chr12:123341172 3'AG 123341172 Downstream 54bp
chr12 123341225 123341225 1 + G A LUSC 123341222 + 123341202 123341242 41 CTCAAGAGGGAGCTGGAGGCCAAGGCCGGAGAGCTGGCCCG CTCAAGAGGGAGCTGGAGGCCAAAGCCGGAGAGCTGGCCCG < 41bp 0.790797832681574 0.56779873913625 0.8889427 0.8693168 prediction 0.445998187090648 Functional Loss - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123341222 chr12:123341225 synonymous SNV . 0 24 hm5C_associated_SNPs_79774 0 0 1 0 2 HIP1R chr12:123341273 5'GT 123341273 Upstream 49bp
chr17 46190020 46190020 1 + C T SKCM 46190017 + 46189997 46190037 41 ATGTGGATTATAAGATATTCCTCCATGTGAGTACATCAAGC ATGTGGATTATAAGATATTCCTCTATGTGAGTACATCAAGC < 41bp 0.73721853574835 0.51421959848456 0.966189 0.93275356 prediction 0.445997874527581 Functional Loss - SNX11 ENSG00000002919 CDS Human protein_coding chr17:46190017 chr17:46190020 nonsynonymous SNV 0.960 2 24 hm5C_associated_SNPs_79775 0 0 0 0 2 SNX11 chr17:46189936 3'AG 46189936 Downstream 85bp
chr17 46190020 46190020 1 + C T SKCM 46190017 + 46189997 46190037 41 ATGTGGATTATAAGATATTCCTCCATGTGAGTACATCAAGC ATGTGGATTATAAGATATTCCTCTATGTGAGTACATCAAGC < 41bp 0.73721853574835 0.51421959848456 0.966189 0.93275356 prediction 0.445997874527581 Functional Loss - SNX11 ENSG00000002919 CDS Human protein_coding chr17:46190017 chr17:46190020 nonsynonymous SNV 0.960 2 24 hm5C_associated_SNPs_79775 0 0 0 0 2 SNX11 chr17:46190022 5'GT 46190022 Upstream 3bp
chr1 161132100 161132100 1 + G A UCEC 161132097 + 161132077 161132117 41 GCTGCAGTGTCTGAGCAGCACTCGACCTCTTCGGGACTTCT GCTGCAGTGTCTGAGCAGCACTCAACCTCTTCGGGACTTCT < 41bp 0.786183291937341 0.563186385789586 0.39950478 0.32641652 prediction 0.44599381229551 Functional Loss - USP21 ENSG00000143258 CDS Human protein_coding chr1:161132097 chr1:161132100 nonsynonymous SNV 0.969 0 24 hm5C_associated_SNPs_79776 0 0 1 0 2 USP21 chr1:161132060 3'AG 161132060 Downstream 41bp
chr1 161132100 161132100 1 + G A UCEC 161132097 + 161132077 161132117 41 GCTGCAGTGTCTGAGCAGCACTCGACCTCTTCGGGACTTCT GCTGCAGTGTCTGAGCAGCACTCAACCTCTTCGGGACTTCT < 41bp 0.786183291937341 0.563186385789586 0.39950478 0.32641652 prediction 0.44599381229551 Functional Loss - USP21 ENSG00000143258 CDS Human protein_coding chr1:161132097 chr1:161132100 nonsynonymous SNV 0.969 0 24 hm5C_associated_SNPs_79776 0 0 1 0 2 USP21 chr1:161132180 5'GT 161132180 Upstream 81bp
chr1 238090129 238090129 1 + C T UCEC 238090127 + 238090107 238090147 41 TGCCCCACTCCTCCACCAGTCACGATGGAAGAAGAGATCGC TGCCCCACTCCTCCACCAGTCATGATGGAAGAAGAGATCGC < 41bp 0.72299662286484 0.489981435186112 0.36984685 0.38337514 prediction 0.44599324572968 Functional Loss - LOC100130331 ENSG00000237250 ncRNA_exonic Human antisense chr1:238090127 chr1:238090129 . . 0 23 hm5C_associated_SNPs_79777 0 0 0 0 1 LOC100130331 chr1:238090049 3'AG 238090049 Downstream 81bp
chr11 66325588 66325588 1 + C T SKCM 66325585 + 66325565 66325605 41 AGATCCGGCGCCTGCAGCGACTCCAGCACCTGGCTGAGAAG AGATCCGGCGCCTGCAGCGACTCTAGCACCTGGCTGAGAAG < 41bp 0.739057277012383 0.516061624042573 0.94009256 0.8975663 prediction 0.44599130593962 Functional Loss - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66325585 chr11:66325588 unknown 0.996 0 24 hm5C_associated_SNPs_79778 0 0 0 0 2 ACTN3 chr11:66325498 3'AG 66325498 Downstream 91bp
chr11 66325588 66325588 1 + C T SKCM 66325585 + 66325565 66325605 41 AGATCCGGCGCCTGCAGCGACTCCAGCACCTGGCTGAGAAG AGATCCGGCGCCTGCAGCGACTCTAGCACCTGGCTGAGAAG < 41bp 0.739057277012383 0.516061624042573 0.94009256 0.8975663 prediction 0.44599130593962 Functional Loss - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66325585 chr11:66325588 unknown 0.996 0 24 hm5C_associated_SNPs_79778 0 0 0 0 2 ACTN3 chr11:66325645 5'GT 66325645 Upstream 58bp
chr18 9396292 9396292 1 + C T UCEC 9396290 + 9396270 9396310 41 CAACCCAGGTATGTGTAATCCTCGAAATTATAGTGACACAC CAACCCAGGTATGTGTAATCCTTGAAATTATAGTGACACAC < 41bp 0.863734572222271 0.64074213529768 0.32301414 0.024159968 prediction 0.445984873849182 Functional Loss - TWSG1 ENSG00000128791 CDS Human protein_coding chr18:9396290 chr18:9396292 stopgain 1.000 1 23 hm5C_associated_SNPs_79779 0 0 1 0 1 TWSG1 chr18:9396278 3'AG 9396278 Downstream 15bp
chr6 76602272 76602272 1 + G C KIRP 76602271 + 76602251 76602291 41 AAGTGGAGGCACAGCTGGCCCGACAGAAGGAGGAGGAATCC AAGTGGAGGCACAGCTGGCCCCACAGAAGGAGGAGGAATCC < 41bp 0.72298706928501 0.412687376065715 0.36381245 0.1828261 prediction 0.44597413857002 Functional Loss - MYO6 ENSG00000196586 CDS Human protein_coding chr6:76602271 chr6:76602272 nonsynonymous SNV 0.892 3 22 hm5C_associated_SNPs_79781 0 0 1 0 1 MYO6 chr6:76602247 3'AG 76602247 Downstream 26bp
chr9 102590360 102590360 1 + T C LIHC 102590359 + 102590339 102590379 41 AGCCCAATATAGCCCTTCCCCTCCAGGTTCCAGTTATGCGG AGCCCAATATAGCCCTTCCCCCCCAGGTTCCAGTTATGCGG < 41bp 0.834298532614434 0.611312181395757 0.92685676 0.0216237 prediction 0.445972702437354 Functional Loss - NR4A3 ENSG00000119508 CDS Human protein_coding chr9:102590359 chr9:102590360 synonymous SNV . 0 22 hm5C_associated_SNPs_79782 0 0 0 0 1 NR4A3 chr9:102590323 3'AG 102590323 Downstream 38bp
chr15 90274756 90274756 1 + C T rs35502270 90274753 + 90274733 90274773 41 TCCTCCTACCTGGTGCTGGCCTGCGAGGATGGTGTGCTCAC TCCTCCTACCTGGTGCTGGCCTGTGAGGATGGTGTGCTCAC < 41bp 0.722983651672865 0.498693632137595 0.2902477 0.31898043 prediction 0.44596730334573 Functional Loss - WDR93 ENSG00000140527 CDS Human protein_coding chr15:90274753 chr15:90274756 synonymous SNV . 0 24 hm5C_associated_SNPs_79783 0 0 0 0 2 WDR93 chr15:90274674 3'AG 90274674 Downstream 83bp
chr15 90274756 90274756 1 + C T rs35502270 90274753 + 90274733 90274773 41 TCCTCCTACCTGGTGCTGGCCTGCGAGGATGGTGTGCTCAC TCCTCCTACCTGGTGCTGGCCTGTGAGGATGGTGTGCTCAC < 41bp 0.722983651672865 0.498693632137595 0.2902477 0.31898043 prediction 0.44596730334573 Functional Loss - WDR93 ENSG00000140527 CDS Human protein_coding chr15:90274753 chr15:90274756 synonymous SNV . 0 24 hm5C_associated_SNPs_79783 0 0 0 0 2 WDR93 chr15:90274793 5'GT 90274793 Upstream 38bp
chr15 85478733 85478733 1 + G T KICH 85478731 + 85478711 85478751 41 GCCGAGGAGTGGGTCGGCGACAGGAAGCAGTGGATCTCCGT GCCGAGGAGTGGGTCGGCGACATGAAGCAGTGGATCTCCGT < 41bp 0.908697289121157 0.685716335334719 0.6487635 0.3794498 prediction 0.445961907572876 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85478731 chr15:85478733 nonsynonymous SNV 0.422 0 23 hm5C_associated_SNPs_79784 0 0 0 0 1 SLC28A1 chr15:85478749 5'GT 85478749 Upstream 17bp
chr11 65048560 65048560 1 + G A SKCM 65048557 + 65048537 65048577 41 GGGAGACCGGGAACATTCCTCGGGTGCTCAAATTCCAGTGG GGGAGACCGGGAACATTCCTCGGATGCTCAAATTCCAGTGG < 41bp 0.79912609012319 0.576149003942061 0.90279603 0.89050996 prediction 0.445954172362256 Functional Loss - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65048557 chr11:65048560 nonsynonymous SNV 0.711 4 24 hm5C_associated_SNPs_79787 0 0 1 0 2 POLA2 chr11:65048463 3'AG 65048463 Downstream 98bp
chr11 65048560 65048560 1 + G A SKCM 65048557 + 65048537 65048577 41 GGGAGACCGGGAACATTCCTCGGGTGCTCAAATTCCAGTGG GGGAGACCGGGAACATTCCTCGGATGCTCAAATTCCAGTGG < 41bp 0.79912609012319 0.576149003942061 0.90279603 0.89050996 prediction 0.445954172362256 Functional Loss - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65048557 chr11:65048560 nonsynonymous SNV 0.711 4 24 hm5C_associated_SNPs_79787 0 0 1 0 2 POLA2 chr11:65048618 5'GT 65048618 Upstream 59bp
chr3 42846284 42846284 1 + G T rs142243495 42846282 + 42846262 42846302 41 GGAGGCGAGCACCGCGAACGCCGTGTCCCGAGCGCCGCCGC GGAGGCGAGCACCGCGAACGCCTTGTCCCGAGCGCCGCCGC < 41bp 0.722974074587992 0.384277702444718 0.8739383 0.4186605 prediction 0.445948149175985 Functional Loss - HIGD1A ENSG00000181061;ENSG00000235288 upstream;downstream Human other chr3:42846282 chr3:42846284 . . 0 23 hm5C_associated_SNPs_79788 0 0 0 0 1 HIGD1A chr3:42846336 5'GT 42846336 Upstream 53bp
chr12 56487891 56487891 1 + G C BLCA 56487890 + 56487870 56487910 41 TTCCCCACTACAGGGAGCCTCGAGAATTTGCCCATGAGGCC TTCCCCACTACAGGGAGCCTCCAGAATTTGCCCATGAGGCC < 41bp 0.722967967939955 0.40111040918774 0.30276188 0.23637354 prediction 0.44593593587991 Functional Loss - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56487890 chr12:56487891 nonsynonymous SNV 0.982 2 22 hm5C_associated_SNPs_79792 0 0 1 0 2 ERBB3 chr12:56487883 3'AG 56487883 Downstream 9bp
chr12 56487891 56487891 1 + G C BLCA 56487890 + 56487870 56487910 41 TTCCCCACTACAGGGAGCCTCGAGAATTTGCCCATGAGGCC TTCCCCACTACAGGGAGCCTCCAGAATTTGCCCATGAGGCC < 41bp 0.722967967939955 0.40111040918774 0.30276188 0.23637354 prediction 0.44593593587991 Functional Loss - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56487890 chr12:56487891 nonsynonymous SNV 0.982 2 22 hm5C_associated_SNPs_79792 0 0 1 0 2 ERBB3 chr12:56487973 5'GT 56487973 Upstream 83bp
chr12 56487893 56487893 1 + G T UCEC 56487890 + 56487870 56487910 41 TTCCCCACTACAGGGAGCCTCGAGAATTTGCCCATGAGGCC TTCCCCACTACAGGGAGCCTCGATAATTTGCCCATGAGGCC < 41bp 0.722967967939955 0.332334856888977 0.30276188 0.12261438 prediction 0.44593593587991 Functional Loss - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56487890 chr12:56487893 stopgain 0.984 1 24 hm5C_associated_SNPs_79793 0 0 1 0 2 ERBB3 chr12:56487883 3'AG 56487883 Downstream 11bp
chr12 56487893 56487893 1 + G T UCEC 56487890 + 56487870 56487910 41 TTCCCCACTACAGGGAGCCTCGAGAATTTGCCCATGAGGCC TTCCCCACTACAGGGAGCCTCGATAATTTGCCCATGAGGCC < 41bp 0.722967967939955 0.332334856888977 0.30276188 0.12261438 prediction 0.44593593587991 Functional Loss - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56487890 chr12:56487893 stopgain 0.984 1 24 hm5C_associated_SNPs_79793 0 0 1 0 2 ERBB3 chr12:56487973 5'GT 56487973 Upstream 81bp
chr21 43706025 43706025 1 + G T LUAD 43706023 + 43706003 43706043 41 GTCAAGGACAATGTGTGTACCGGGGAAAAGTCTGCAATCTT GTCAAGGACAATGTGTGTACCGTGGAAAAGTCTGCAATCTT < 41bp 0.722967490103407 0.374680173773016 0.8988878 0.44348338 prediction 0.445934980206814 Functional Loss - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43706023 chr21:43706025 synonymous SNV . 0 23 hm5C_associated_SNPs_79794 0 0 0 0 1 ABCG1 chr21:43706104 5'GT 43706104 Upstream 80bp
chr2 98340512 98340512 1 + G A STAD 98340509 + 98340489 98340529 41 GCCCAGGGGCGATGCCAGACCCCGCGGCGCACCTGCCCTTC GCCCAGGGGCGATGCCAGACCCCACGGCGCACCTGCCCTTC < 41bp 0.722967158846539 0.473498103382112 0.27980363 0.2858648 prediction 0.445934317693077 Functional Loss - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98340509 chr2:98340512 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_79796 0 0 0 0 1 ZAP70 chr2:98340479 3'AG 98340479 Downstream 34bp
chr11 122756858 122756858 1 + C T GBM 122756856 + 122756836 122756876 41 TGGAAAAGCAGCTCAGATGGCTCGCGAGCAAAACCACCATA TGGAAAAGCAGCTCAGATGGCTTGCGAGCAAAACCACCATA < 41bp 0.722967042139816 0.453827288941519 0.17492858 0.1425859 prediction 0.445934084279633 Functional Loss - C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122756856 chr11:122756858 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_79797 0 0 0 0 1 C11orf63 chr11:122756901 5'GT 122756901 Upstream 44bp
chr20 44639137 44639137 1 + G A UCEC 44639134 + 44639114 44639154 41 CGCTACAGGATCCAAAACTACTCGGAAGACTTGCCGCGGGC CGCTACAGGATCCAAAACTACTCAGAAGACTTGCCGCGGGC < 41bp 0.790086223836272 0.567120555918562 0.24291116 0.2090489 prediction 0.445931335835421 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44639134 chr20:44639137 synonymous SNV . 0 24 hm5C_associated_SNPs_79798 0 0 0 0 1 MMP9 chr20:44639122 3'AG 44639122 Downstream 16bp
chr11 67050012 67050012 1 + G A COAD 67050009 + 67049989 67050029 41 GCATGCTCTTCAAGTTGCTGCGGGGGTGAGTGGCCCATCCC GCATGCTCTTCAAGTTGCTGCGGAGGTGAGTGGCCCATCCC < 41bp 0.802176676861754 0.579214452425735 0.9193592 0.9068352 prediction 0.445924448872037 Functional Loss - GRK2 ENSG00000173020 CDS Human protein_coding chr11:67050009 chr11:67050012 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_79801 0 0 1 0 1 GRK2 chr11:67050013 5'GT 67050013 Upstream 2bp
chr1 44401357 44401357 1 + C T BLCA 44401355 + 44401335 44401375 41 CTTGGACTTGGAGGCCTCTCCACGCTGTCCCACTGCCCCTG CTTGGACTTGGAGGCCTCTCCATGCTGTCCCACTGCCCCTG < 41bp 0.806940557728097 0.583979767675822 0.870365 0.8354358 prediction 0.44592158010455 Functional Loss - ARTN ENSG00000117407 CDS Human protein_coding chr1:44401355 chr1:44401357 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_79803 0 0 0 0 2 ARTN chr1:44401262 3'AG 44401262 Downstream 96bp
chr1 44401357 44401357 1 + C T BLCA 44401355 + 44401335 44401375 41 CTTGGACTTGGAGGCCTCTCCACGCTGTCCCACTGCCCCTG CTTGGACTTGGAGGCCTCTCCATGCTGTCCCACTGCCCCTG < 41bp 0.806940557728097 0.583979767675822 0.870365 0.8354358 prediction 0.44592158010455 Functional Loss - ARTN ENSG00000117407 CDS Human protein_coding chr1:44401355 chr1:44401357 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_79803 0 0 0 0 2 ARTN chr1:44401388 5'GT 44401388 Upstream 32bp
chr14 69908952 69908952 1 + G A LUAD 69908949 + 69908929 69908969 41 GTTTTCATGTTGCTGGTGGACCAGATTGGTAACTCCCATGT GTTTTCATGTTGCTGGTGGACCAAATTGGTAACTCCCATGT < 41bp 0.761743802362456 0.538784657697051 0.31870258 0.22994077 prediction 0.44591828933081 Functional Loss - SLC39A9 ENSG00000029364 CDS Human protein_coding chr14:69908949 chr14:69908952 synonymous SNV . 0 24 hm5C_associated_SNPs_79804 0 0 1 0 1 SLC39A9 chr14:69908983 5'GT 69908983 Upstream 32bp
chr16 335184 335184 1 + C T rs376254895 335182 + 335162 335202 41 ACACACAGCATGCGCCTGGTCACGGAGTTCAACAGCCAGGT ACACACAGCATGCGCCTGGTCATGGAGTTCAACAGCCAGGT < 41bp 0.809385036397549 0.586431937167199 0.12455782 0.11546698 prediction 0.4459061984607 Functional Loss - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:335182 chr16:335184 nonsynonymous SNV 0.808 1 23 hm5C_associated_SNPs_79808 0 0 0 0 1 PDIA2 chr16:335200 5'GT 335200 Upstream 17bp
chr17 1673322 1673322 1 + G A UCEC 1673319 + 1673299 1673339 41 CTGTCTCCTCTCAGTGTGGCCACGGCCCTCTCGGCCCTCTC CTGTCTCCTCTCAGTGTGGCCACAGCCCTCTCGGCCCTCTC < 41bp 0.799042027110966 0.576091169706592 0.48139235 0.52723885 prediction 0.445901714808748 Functional Loss - SERPINF1 ENSG00000132386 CDS Human protein_coding chr17:1673319 chr17:1673322 synonymous SNV . 0 24 hm5C_associated_SNPs_79810 0 0 1 0 1 SERPINF1 chr17:1673344 5'GT 1673344 Upstream 23bp
chr21 47533969 47533969 1 + G T STAD 47533966 + 47533946 47533986 41 ATCCCTGGGCCCTCTGGCCCCAAGGGCTACCGTGGACAGAA ATCCCTGGGCCCTCTGGCCCCAATGGCTACCGTGGACAGAA < 41bp 0.722950393563931 0.318568167310043 0.87134135 0.06333515 prediction 0.445900787127862 Functional Loss - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47533966 chr21:47533969 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_79811 0 0 1 0 2 COL6A2 chr21:47533922 3'AG 47533922 Downstream 48bp
chr21 47533969 47533969 1 + G T STAD 47533966 + 47533946 47533986 41 ATCCCTGGGCCCTCTGGCCCCAAGGGCTACCGTGGACAGAA ATCCCTGGGCCCTCTGGCCCCAATGGCTACCGTGGACAGAA < 41bp 0.722950393563931 0.318568167310043 0.87134135 0.06333515 prediction 0.445900787127862 Functional Loss - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47533966 chr21:47533969 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_79811 0 0 1 0 2 COL6A2 chr21:47533987 5'GT 47533987 Upstream 19bp
chr18 33725995 33725995 1 + G T UCEC 33725992 + 33725972 33726012 41 CTGGGCTCCAGATGAAGAGTCAGGAGTTTGGCTAGAACAGG CTGGGCTCCAGATGAAGAGTCAGTAGTTTGGCTAGAACAGG < 41bp 0.73961317262836 0.516666728210154 0.91370225 0.32204384 prediction 0.445892888836412 Functional Loss - ELP2 ENSG00000134759 CDS Human protein_coding chr18:33725992 chr18:33725995 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_79814 0 0 1 0 2 ELP2 chr18:33725911 3'AG 33725911 Downstream 85bp
chr18 33725995 33725995 1 + G T UCEC 33725992 + 33725972 33726012 41 CTGGGCTCCAGATGAAGAGTCAGGAGTTTGGCTAGAACAGG CTGGGCTCCAGATGAAGAGTCAGTAGTTTGGCTAGAACAGG < 41bp 0.73961317262836 0.516666728210154 0.91370225 0.32204384 prediction 0.445892888836412 Functional Loss - ELP2 ENSG00000134759 CDS Human protein_coding chr18:33725992 chr18:33725995 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_79814 0 0 1 0 2 ELP2 chr18:33726011 5'GT 33726011 Upstream 17bp
chr19 614007 614007 1 + G A SKCM 614004 + 613984 614024 41 AGACGGTGGCCATCGACCGCCTGGACCGCATCGGTGAGCGG AGACGGTGGCCATCGACCGCCTGAACCGCATCGGTGAGCGG < 41bp 0.767449663831225 0.544504904280913 0.12182358 0.13373879 prediction 0.445889519100625 Functional Loss - HCN2 ENSG00000099822 CDS Human protein_coding chr19:614004 chr19:614007 nonsynonymous SNV 0.961 0 24 hm5C_associated_SNPs_79817 0 0 0 0 1 HCN2 chr19:614016 5'GT 614016 Upstream 10bp
chr2 61009111 61009111 1 + G A UCEC 61009108 + 61009088 61009128 41 GTATAATGTGTCCACATCAACTCGAACAGTAATGGTAGAAG GTATAATGTGTCCACATCAACTCAAACAGTAATGGTAGAAG < 41bp 0.750196172174411 0.527255306397836 0.41976476 0.12704328 prediction 0.44588173155315 Functional Loss - PAPOLG ENSG00000115421 CDS Human protein_coding chr2:61009108 chr2:61009111 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_79818 0 0 1 0 1 PAPOLG chr2:61009140 5'GT 61009140 Upstream 30bp
chr19 33585142 33585142 1 + C T CESC 33585140 + 33585120 33585160 41 AGAAGGACAAGGAGTTGGTCCTCGAGTAAAGAGACGGCCAC AGAAGGACAAGGAGTTGGTCCTTGAGTAAAGAGACGGCCAC < 41bp 0.868332875579363 0.645392277100722 0.14828059 0.024787813 prediction 0.445881196957282 Functional Loss - GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33585140 chr19:33585142 stopgain 1.000 1 23 hm5C_associated_SNPs_79819 0 0 1 0 2 GPATCH1 chr19:33585078 3'AG 33585078 Downstream 65bp
chr19 33585142 33585142 1 + C T CESC 33585140 + 33585120 33585160 41 AGAAGGACAAGGAGTTGGTCCTCGAGTAAAGAGACGGCCAC AGAAGGACAAGGAGTTGGTCCTTGAGTAAAGAGACGGCCAC < 41bp 0.868332875579363 0.645392277100722 0.14828059 0.024787813 prediction 0.445881196957282 Functional Loss - GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33585140 chr19:33585142 stopgain 1.000 1 23 hm5C_associated_SNPs_79819 0 0 1 0 2 GPATCH1 chr19:33585175 5'GT 33585175 Upstream 34bp
chr5 176074643 176074643 1 + G A rs74793226 176074640 + 176074620 176074660 41 CCCGGCAAGCACCAGCATTTCCAGGAACCTGAGGTCGGCTG CCCGGCAAGCACCAGCATTTCCAAGAACCTGAGGTCGGCTG < 41bp 0.761884741032284 0.538946354130543 0.8295909 0.4692361 prediction 0.445876773803483 Functional Loss - TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176074640 chr5:176074643 synonymous SNV . 0 24 hm5C_associated_SNPs_79820 0 0 1 0 1 TSPAN17 chr5:176074703 5'GT 176074703 Upstream 61bp
chr7 100865924 100865924 1 + G T LUSC 100865922 + 100865902 100865942 41 GGGCAGCGGCGGGTGCTGGACCGGGCTGCCCGGCAGCGTCG GGGCAGCGGCGGGTGCTGGACCTGGCTGCCCGGCAGCGTCG < 41bp 0.908379486026734 0.685450763400744 0.9071787 0.37826246 prediction 0.445857445251981 Functional Loss - ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100865922 chr7:100865924 nonsynonymous SNV 0.651 1 23 hm5C_associated_SNPs_79822 0 0 1 0 1 ZNHIT1 chr7:100865885 3'AG 100865885 Downstream 40bp
chr1 20940386 20940386 1 + G A BLCA 20940383 + 20940363 20940403 41 TGTGGGGCCTGCAGGCAAGTCATGAGAGAGGTAAGCAGCTT TGTGGGGCCTGCAGGCAAGTCATAAGAGAGGTAAGCAGCTT < 41bp 0.722928719032314 0.490859984827941 0.45468104 0.41908526 prediction 0.445857438064629 Functional Loss - CDA ENSG00000158825 CDS Human protein_coding chr1:20940383 chr1:20940386 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_79823 0 0 0 1 2 CDA chr1:20940335 3'AG 20940335 Downstream 52bp
chr1 20940386 20940386 1 + G A BLCA 20940383 + 20940363 20940403 41 TGTGGGGCCTGCAGGCAAGTCATGAGAGAGGTAAGCAGCTT TGTGGGGCCTGCAGGCAAGTCATAAGAGAGGTAAGCAGCTT < 41bp 0.722928719032314 0.490859984827941 0.45468104 0.41908526 prediction 0.445857438064629 Functional Loss - CDA ENSG00000158825 CDS Human protein_coding chr1:20940383 chr1:20940386 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_79823 0 0 0 1 2 CDA chr1:20940392 5'GT 20940392 Upstream 7bp
chr12 122669143 122669143 1 + C T PRAD 122669141 + 122669121 122669161 41 GAGAGGAGGATGTGGTGAGCCCCGGAGAGGAGACGGTGGAG GAGAGGAGGATGTGGTGAGCCCTGGAGAGGAGACGGTGGAG < 41bp 0.818877716931574 0.595953779871512 0.4038146 0.40585268 prediction 0.445847874120125 Functional Loss - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122669141 chr12:122669143 synonymous SNV . 0 23 hm5C_associated_SNPs_79827 0 0 0 0 1 LRRC43 chr12:122669066 3'AG 122669066 Downstream 78bp
chr6 54792355 54792355 1 + G A SKCM 54792352 + 54792332 54792372 41 CCAAGATTATCTTTCAAAAACAGGGGCAAAATTCCATGGAA CCAAGATTATCTTTCAAAAACAGAGGCAAAATTCCATGGAA < 41bp 0.737093501592862 0.514170680740446 0.90308285 0.86221915 prediction 0.445845641704832 Functional Loss - FAM83B ENSG00000168143 CDS Human protein_coding chr6:54792352 chr6:54792355 nonsynonymous SNV 0.987 4 24 hm5C_associated_SNPs_79829 0 0 0 0 2 FAM83B chr6:54792306 3'AG 54792306 Downstream 50bp
chr6 54792355 54792355 1 + G A SKCM 54792352 + 54792332 54792372 41 CCAAGATTATCTTTCAAAAACAGGGGCAAAATTCCATGGAA CCAAGATTATCTTTCAAAAACAGAGGCAAAATTCCATGGAA < 41bp 0.737093501592862 0.514170680740446 0.90308285 0.86221915 prediction 0.445845641704832 Functional Loss - FAM83B ENSG00000168143 CDS Human protein_coding chr6:54792352 chr6:54792355 nonsynonymous SNV 0.987 4 24 hm5C_associated_SNPs_79829 0 0 0 0 2 FAM83B chr6:54792430 5'GT 54792430 Upstream 76bp
chr19 35660546 35660546 1 + T C rs1046294 35660545 + 35660525 35660565 41 CAGAAACAGGAGCTGACAACCTGCTGGGCACCCGAAGACCA CAGAAACAGGAGCTGACAACCCGCTGGGCACCCGAAGACCA < 41bp 0.751267281048219 0.528349412635203 0.28384623 0.3497327 prediction 0.445835736826032 Functional Loss - FXYD5 ENSG00000089327 UTR3 Human protein_coding chr19:35660545 chr19:35660546 . . 0 22 hm5C_associated_SNPs_79833 0 0 1 0 1 FXYD5 chr19:35660469 3'AG 35660469 Downstream 78bp
chr12 79685814 79685814 1 + T C rs34404568 79685813 + 79685793 79685833 41 CAAGGATGATGATGCTGAAACTGGATTGACAGATGGAGAAG CAAGGATGATGATGCTGAAACCGGATTGACAGATGGAGAAG < 41bp 0.724254235256889 0.501338087793153 0.2262415 0.32164663 prediction 0.445832294927472 Functional Loss - SYT1 ENSG00000067715 CDS Human protein_coding chr12:79685813 chr12:79685814 synonymous SNV . 0 22 hm5C_associated_SNPs_79837 0 0 0 0 3 SYT1 chr12:79685788 3'AG 79685788 Downstream 27bp
chr12 79685814 79685814 1 + T C rs34404568 79685813 + 79685793 79685833 41 CAAGGATGATGATGCTGAAACTGGATTGACAGATGGAGAAG CAAGGATGATGATGCTGAAACCGGATTGACAGATGGAGAAG < 41bp 0.724254235256889 0.501338087793153 0.2262415 0.32164663 prediction 0.445832294927472 Functional Loss - SYT1 ENSG00000067715 CDS Human protein_coding chr12:79685813 chr12:79685814 synonymous SNV . 0 22 hm5C_associated_SNPs_79837 0 0 0 0 3 SYT1 chr12:79685797 3'AG 79685797 Downstream 18bp
chr12 79685814 79685814 1 + T C rs34404568 79685813 + 79685793 79685833 41 CAAGGATGATGATGCTGAAACTGGATTGACAGATGGAGAAG CAAGGATGATGATGCTGAAACCGGATTGACAGATGGAGAAG < 41bp 0.724254235256889 0.501338087793153 0.2262415 0.32164663 prediction 0.445832294927472 Functional Loss - SYT1 ENSG00000067715 CDS Human protein_coding chr12:79685813 chr12:79685814 synonymous SNV . 0 22 hm5C_associated_SNPs_79837 0 0 0 0 3 SYT1 chr12:79685910 5'GT 79685910 Upstream 97bp
chr11 65048534 65048534 1 + C T GBM 65048532 + 65048512 65048552 41 TGAACAACAAGTCAGTGATTCTCGAGGGAGACCGGGAACAT TGAACAACAAGTCAGTGATTCTTGAGGGAGACCGGGAACAT < 41bp 0.875977244567084 0.653061585861146 0.15726724 0.14922917 prediction 0.445831317411875 Functional Loss - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65048532 chr11:65048534 synonymous SNV . 0 23 hm5C_associated_SNPs_79838 0 0 1 0 2 POLA2 chr11:65048463 3'AG 65048463 Downstream 72bp
chr11 65048534 65048534 1 + C T GBM 65048532 + 65048512 65048552 41 TGAACAACAAGTCAGTGATTCTCGAGGGAGACCGGGAACAT TGAACAACAAGTCAGTGATTCTTGAGGGAGACCGGGAACAT < 41bp 0.875977244567084 0.653061585861146 0.15726724 0.14922917 prediction 0.445831317411875 Functional Loss - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65048532 chr11:65048534 synonymous SNV . 0 23 hm5C_associated_SNPs_79838 0 0 1 0 2 POLA2 chr11:65048618 5'GT 65048618 Upstream 85bp
chr4 186263216 186263216 1 + G A LGG 186263213 + 186263193 186263233 41 GGAGGAGTTGAAACTAAGAACTGGACGGTCCCCAGAAGGCT GGAGGAGTTGAAACTAAGAACTGAACGGTCCCCAGAAGGCT < 41bp 0.773631514707895 0.55071769005879 0.20011681 0.293627 prediction 0.445827649298211 Functional Loss - SNX25 ENSG00000109762 CDS Human protein_coding chr4:186263213 chr4:186263216 stopgain 0.998 1 24 hm5C_associated_SNPs_79839 0 0 1 0 2 SNX25 chr4:186263130 3'AG 186263130 Downstream 87bp
chr4 186263216 186263216 1 + G A LGG 186263213 + 186263193 186263233 41 GGAGGAGTTGAAACTAAGAACTGGACGGTCCCCAGAAGGCT GGAGGAGTTGAAACTAAGAACTGAACGGTCCCCAGAAGGCT < 41bp 0.773631514707895 0.55071769005879 0.20011681 0.293627 prediction 0.445827649298211 Functional Loss - SNX25 ENSG00000109762 CDS Human protein_coding chr4:186263213 chr4:186263216 stopgain 0.998 1 24 hm5C_associated_SNPs_79839 0 0 1 0 2 SNX25 chr4:186263270 5'GT 186263270 Upstream 55bp
chr17 32598761 32598761 1 + G T UCEC 32598759 + 32598739 32598779 41 AGATCTGTGCTGACCCCACACAGAAGTGGGTCCAGGACTTT AGATCTGTGCTGACCCCACACATAAGTGGGTCCAGGACTTT < 41bp 0.83299991608566 0.61008840313401 0.15496257 0.038650602 prediction 0.4458230259033 Functional Loss - CCL7 ENSG00000108688 CDS Human protein_coding chr17:32598759 chr17:32598761 nonsynonymous SNV 0.715 2 23 hm5C_associated_SNPs_79841 0 0 0 0 1 CCL7 chr17:32598716 3'AG 32598716 Downstream 46bp
chr4 100434277 100434277 1 + G A SKCM 100434274 + 100434254 100434294 41 CCGACATCTGCTCTTCAGATCGAGGGCAAAGGCAGCCATAT CCGACATCTGCTCTTCAGATCGAAGGCAAAGGCAGCCATAT < 41bp 0.72291104837515 0.482726825460502 0.92957664 0.8342184 prediction 0.445822096750299 Functional Loss - C4orf17 ENSG00000138813 CDS Human protein_coding chr4:100434274 chr4:100434277 synonymous SNV . 0 24 hm5C_associated_SNPs_79842 0 0 0 0 1 C4orf17 chr4:100434365 5'GT 100434365 Upstream 89bp
chr2 29259573 29259573 1 + G A SKCM 29259570 + 29259550 29259590 41 CAACCTCAACTCCAAGAACTCAGGGATTTACGCTGCTGCCG CAACCTCAACTCCAAGAACTCAGAGATTTACGCTGCTGCCG < 41bp 0.808566594702668 0.585661366077262 0.941427 0.70220953 prediction 0.445810457250811 Functional Loss - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29259570 chr2:29259573 nonsynonymous SNV 0.158 2 24 hm5C_associated_SNPs_79846 0 0 0 0 1 TOGARAM2 chr2:29259623 5'GT 29259623 Upstream 51bp
chr2 202955502 202955502 1 + G T CESC 202955499 + 202955479 202955519 41 TGGTGTCCCCACAGGGAGAGCAGGACAGAGCCTGGCAACCA TGGTGTCCCCACAGGGAGAGCAGTACAGAGCCTGGCAACCA < 41bp 0.722904350844617 0.351909170478158 0.8624075 0.6030613 prediction 0.445808701689234 Functional Loss - KIAA2012 ENSG00000182329 CDS Human protein_coding chr2:202955499 chr2:202955502 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_79847 0 0 0 0 1 KIAA2012 chr2:202955493 3'AG 202955493 Downstream 10bp
chr6 39835590 39835590 1 + G A rs114233535 39835587 + 39835567 39835607 41 TGCAGGCCATGCTGCACTACCAGGTGTATGCAGCAGAGCGA TGCAGGCCATGCTGCACTACCAGATGTATGCAGCAGAGCGA < 41bp 0.722901036492092 0.467855870537048 0.9201015 0.88355577 prediction 0.445802072984184 Functional Loss - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39835587 chr6:39835590 nonsynonymous SNV 0.977 2 24 hm5C_associated_SNPs_79849 0 0 0 0 1 DAAM2 chr6:39835619 5'GT 39835619 Upstream 30bp
chr11 844154 844154 1 + G T rs55885142 844152 + 844132 844172 41 CGGTGGCCTGGGGTCAGAGCCAGGTTCAGCTGCGAGGCTGC CGGTGGCCTGGGGTCAGAGCCATGTTCAGCTGCGAGGCTGC < 41bp 0.722900119599555 0.376459391351385 0.8361261 0.10707623 prediction 0.445800239199111 Functional Loss - TSPAN4 ENSG00000214063 UTR5 Human protein_coding chr11:844152 chr11:844154 . . 0 23 hm5C_associated_SNPs_79851 0 0 1 0 1 TSPAN4 chr11:844186 5'GT 844186 Upstream 33bp
chr17 61937315 61937315 1 + G T UCEC 61937312 + 61937292 61937332 41 GACTGTGAGCTGCGAGGTGGCTAGGGTGTTTCCAGCCAAAG GACTGTGAGCTGCGAGGTGGCTATGGTGTTTCCAGCCAAAG < 41bp 0.722896833886942 0.348261329476427 0.33358705 0.09795341 prediction 0.445793667773885 Functional Loss - TCAM1P ENSG00000240280 ncRNA_exonic Human transcribed_unitary_pseudogene chr17:61937312 chr17:61937315 . . 0 24 hm5C_associated_SNPs_79852 0 0 0 0 1 TCAM1P chr17:61937234 3'AG 61937234 Downstream 82bp
chr10 12206359 12206359 1 + G A SKCM 12206356 + 12206336 12206376 41 GGGGGCCATTGGATCTGGCACTGGAATTCTGCTAGCAGTCA GGGGGCCATTGGATCTGGCACTGAAATTCTGCTAGCAGTCA < 41bp 0.7605414187348 0.537648878649472 0.46573102 0.3436795 prediction 0.445785080170657 Functional Loss - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12206356 chr10:12206359 nonsynonymous SNV 0.517 4 24 hm5C_associated_SNPs_79854 0 0 1 0 1 SEC61A2 chr10:12206267 3'AG 12206267 Downstream 93bp
chr17 79985969 79985969 1 + G A SKCM 79985966 + 79985946 79985986 41 AGCTCCTGGCCACAGCGGAGCAGGAGCAGCTGAGCCTGTCA AGCTCCTGGCCACAGCGGAGCAGAAGCAGCTGAGCCTGTCA < 41bp 0.803864872687148 0.58097905502104 0.89681023 0.8634883 prediction 0.445771635332217 Functional Loss - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79985966 chr17:79985969 nonsynonymous SNV 0.210 1 24 hm5C_associated_SNPs_79860 0 0 1 0 2 LRRC45 chr17:79985887 3'AG 79985887 Downstream 83bp
chr17 79985969 79985969 1 + G A SKCM 79985966 + 79985946 79985986 41 AGCTCCTGGCCACAGCGGAGCAGGAGCAGCTGAGCCTGTCA AGCTCCTGGCCACAGCGGAGCAGAAGCAGCTGAGCCTGTCA < 41bp 0.803864872687148 0.58097905502104 0.89681023 0.8634883 prediction 0.445771635332217 Functional Loss - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79985966 chr17:79985969 nonsynonymous SNV 0.210 1 24 hm5C_associated_SNPs_79860 0 0 1 0 2 LRRC45 chr17:79986022 5'GT 79986022 Upstream 54bp
chr3 25635088 25635088 1 + G T HNSC 25635085 + 25635065 25635105 41 TCGAACTCAGATGCACAATGCTGGATTTGGTCCTCTGACTG TCGAACTCAGATGCACAATGCTGTATTTGGTCCTCTGACTG < 41bp 0.722878568754395 0.373156680265098 0.41137284 0.2161006 prediction 0.44575713750879 Functional Loss - RARB ENSG00000077092 CDS Human protein_coding chr3:25635085 chr3:25635088 nonsynonymous SNV 0.988 5 24 hm5C_associated_SNPs_79864 0 0 1 0 1 RARB chr3:25634994 3'AG 25634994 Downstream 95bp
chr11 123994389 123994389 1 + C T UCEC 123994386 + 123994366 123994406 41 GGGAGAGTGTGAAGTACACTCAGCAAACAATGGAGGAGGCT GGGAGAGTGTGAAGTACACTCAGTAAACAATGGAGGAGGCT < 41bp 0.722875552875843 0.497597837819468 0.67561007 0.6338945 prediction 0.445751105751686 Functional Loss - VWA5A ENSG00000110002 CDS Human protein_coding chr11:123994386 chr11:123994389 stopgain 0.154 0 24 hm5C_associated_SNPs_79865 0 0 1 0 1 VWA5A chr11:123994367 3'AG 123994367 Downstream 23bp
chr2 128408312 128408312 1 + G T OV 128408309 + 128408289 128408329 41 GGCTCTGACTCCAGCCAAAGCATGAATGGCCTTGAAGTGGC GGCTCTGACTCCAGCCAAAGCATTAATGGCCTTGAAGTGGC < 41bp 0.722870518660373 0.32334195703961 0.2006998 0.5526502 prediction 0.445741037320746 Functional Loss - GPR17 ENSG00000144230 CDS Human protein_coding chr2:128408309 chr2:128408312 nonsynonymous SNV 0.377 3 24 hm5C_associated_SNPs_79869 0 0 0 0 1 GPR17 chr2:128408290 3'AG 128408290 Downstream 23bp
chr5 162896811 162896811 1 + G T LUAD 162896808 + 162896788 162896828 41 AAACAACTTATTGAATTGACCAGGACTAATGAACTACTAAA AAACAACTTATTGAATTGACCAGTACTAATGAACTACTAAA < 41bp 0.722870191868466 0.354124286914995 0.09090987 0.0571599 prediction 0.445740383736933 Functional Loss - HMMR ENSG00000072571 CDS Human protein_coding chr5:162896808 chr5:162896811 nonsynonymous SNV 0.280 3 24 hm5C_associated_SNPs_79870 0 0 1 0 1 HMMR chr5:162896835 5'GT 162896835 Upstream 25bp
chrX 149839986 149839986 1 + C T UCEC 149839984 + 149839964 149840004 41 CGGCTTGAGGAACTGCAGCTCGCCAACTCTGCCAAGCTTTC CGGCTTGAGGAACTGCAGCTCGTCAACTCTGCCAAGCTTTC < 41bp 0.722869537485737 0.442379212241365 0.14918375 0.069722265 prediction 0.445739074971475 Functional Loss - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149839984 chrX:149839986 nonsynonymous SNV 0.929 1 23 hm5C_associated_SNPs_79871 0 0 1 0 1 MTM1 chrX:149839901 3'AG 149839901 Downstream 86bp
chr1 166973433 166973433 1 + G A SKCM 166973430 + 166973410 166973450 41 CCCTCAGGTGATTCTAGTCACAAGATTCCTATTTCAAATTT CCCTCAGGTGATTCTAGTCACAAAATTCCTATTTCAAATTT < 41bp 0.734401331608217 0.511533395479098 0.3788746 0.17960128 prediction 0.445735872258237 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166973430 chr1:166973433 synonymous SNV . 0 24 hm5C_associated_SNPs_79873 0 0 0 1 1 MAEL chr1:166973417 3'AG 166973417 Downstream 17bp
chr8 28588787 28588787 1 + G A GBM 28588784 + 28588764 28588804 41 TTGAACAACCGATTCTTACCCTGGAATGAAATTGAGACAGA TTGAACAACCGATTCTTACCCTGAAATGAAATTGAGACAGA < 41bp 0.739572871873473 0.516706938812196 0.21842983 0.089205 prediction 0.445731866122555 Functional Loss - EXTL3 ENSG00000012232 CDS Human protein_coding chr8:28588784 chr8:28588787 stopgain 1.000 1 24 hm5C_associated_SNPs_79874 0 0 1 0 2 EXTL3 chr8:28588740 3'AG 28588740 Downstream 48bp
chr8 28588787 28588787 1 + G A GBM 28588784 + 28588764 28588804 41 TTGAACAACCGATTCTTACCCTGGAATGAAATTGAGACAGA TTGAACAACCGATTCTTACCCTGAAATGAAATTGAGACAGA < 41bp 0.739572871873473 0.516706938812196 0.21842983 0.089205 prediction 0.445731866122555 Functional Loss - EXTL3 ENSG00000012232 CDS Human protein_coding chr8:28588784 chr8:28588787 stopgain 1.000 1 24 hm5C_associated_SNPs_79874 0 0 1 0 2 EXTL3 chr8:28588867 5'GT 28588867 Upstream 81bp
chr20 32345070 32345070 1 + C T COAD 32345067 + 32345047 32345087 41 GCCGCCCCCATGACCAGCGCCACCGGGGGCACGGTGGCCAC GCCGCCCCCATGACCAGCGCCACTGGGGGCACGGTGGCCAC < 41bp 0.737250279383669 0.514391436637613 0.3255906 0.18389988 prediction 0.445717685492111 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32345067 chr20:32345070 synonymous SNV . 0 24 hm5C_associated_SNPs_79875 0 0 0 0 2 ZNF341 chr20:32345128 5'GT 32345128 Upstream 59bp
chr20 32345070 32345070 1 + C T COAD 32345067 + 32345047 32345087 41 GCCGCCCCCATGACCAGCGCCACCGGGGGCACGGTGGCCAC GCCGCCCCCATGACCAGCGCCACTGGGGGCACGGTGGCCAC < 41bp 0.737250279383669 0.514391436637613 0.3255906 0.18389988 prediction 0.445717685492111 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32345067 chr20:32345070 synonymous SNV . 0 24 hm5C_associated_SNPs_79875 0 0 0 0 2 ZNF341 chr20:32345149 5'GT 32345149 Upstream 80bp
chr19 49652942 49652942 1 + C T HNSC 49652940 + 49652920 49652960 41 TGCAGCGGGAGCCCTGGGCTCTCCGGGGCTCCCTCTCCGCA TGCAGCGGGAGCCCTGGGCTCTTCGGGGCTCCCTCTCCGCA < 41bp 0.722856665541995 0.451247114748968 0.52600557 0.4466048 prediction 0.445713331083991 Functional Loss - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652940 chr19:49652942 nonsynonymous SNV 0.987 0 23 hm5C_associated_SNPs_79877 0 0 0 0 1 PPFIA3 chr19:49652975 5'GT 49652975 Upstream 34bp
chr19 58817484 58817484 1 + G A rs111549114 58817481 + 58817461 58817501 41 CGTGACAAGTGGTGCCCGACCAGGGACCTGAACGAGGAAGG CGTGACAAGTGGTGCCCGACCAGAGACCTGAACGAGGAAGG < 41bp 0.746433034043778 0.523586641249356 0.880625 0.4475184 prediction 0.445692785588844 Functional Loss - ERVK3-1;ZNF8-ERVK3-1 ENSG00000142396 ncRNA_exonic Human protein_coding chr19:58817481 chr19:58817484 . . 0 24 hm5C_associated_SNPs_79881 0 0 1 0 2 ERVK3-1;ZNF8-ERVK3-1 chr19:58817454 3'AG 58817454 Downstream 31bp
chr19 58817484 58817484 1 + G A rs111549114 58817481 + 58817461 58817501 41 CGTGACAAGTGGTGCCCGACCAGGGACCTGAACGAGGAAGG CGTGACAAGTGGTGCCCGACCAGAGACCTGAACGAGGAAGG < 41bp 0.746433034043778 0.523586641249356 0.880625 0.4475184 prediction 0.445692785588844 Functional Loss - ERVK3-1;ZNF8-ERVK3-1 ENSG00000142396 ncRNA_exonic Human protein_coding chr19:58817481 chr19:58817484 . . 0 24 hm5C_associated_SNPs_79881 0 0 1 0 2 ERVK3-1;ZNF8-ERVK3-1 chr19:58817582 5'GT 58817582 Upstream 99bp
chr1 909238 909238 1 + G A rs3829740 909235 + 909215 909255 41 CCTCAGTGCCATGCAGAGTGCACGTGGACCCACGCCCTCGA CCTCAGTGCCATGCAGAGTGCACATGGACCCACGCCCTCGA < 41bp 0.784867177237581 0.562022766587643 0.5056744 0.16209096 prediction 0.445688821299876 Functional Loss - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:909235 chr1:909238 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_79882 0 0 0 0 1 PLEKHN1 chr1:909213 3'AG 909213 Downstream 26bp
chr3 121554150 121554150 1 + A C STAD 121554146 + 121554126 121554166 41 AGTAATTATGAATAGCGCAGCGGGATTCTCACACCTAGACC AGTAATTATGAATAGCGCAGCGGGCTTCTCACACCTAGACC < 41bp 0.918555577416573 0.695715479756223 0.8153691 0.568525 prediction 0.445680195320699 Functional Loss - EAF2 ENSG00000145088 CDS Human protein_coding chr3:121554146 chr3:121554150 synonymous SNV . 0 25 hm5C_associated_SNPs_79884 0 0 0 0 1 EAF2 chr3:121554238 5'GT 121554238 Upstream 89bp
chrX 9841736 9841736 1 + T C LUSC 9841735 + 9841715 9841755 41 GGCGGTCGACAAGTTACTGGCTGGAGATGAGATCGTCGGCA GGCGGTCGACAAGTTACTGGCCGGAGATGAGATCGTCGGCA < 41bp 0.722839641836485 0.476241137323901 0.31764314 0.43248308 prediction 0.44567928367297 Functional Loss - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9841735 chrX:9841736 synonymous SNV . 0 22 hm5C_associated_SNPs_79885 0 0 0 0 1 SHROOM2 chrX:9841692 3'AG 9841692 Downstream 45bp
chr7 73753320 73753320 1 + G T LUAD 73753317 + 73753297 73753337 41 GGGGCGAAAAGGACCTGCGCCTGGGGGACCGCGTGCTGGTG GGGGCGAAAAGGACCTGCGCCTGTGGGACCGCGTGCTGGTG < 41bp 0.722839443080265 0.324053978475082 0.82429737 0.18252707 prediction 0.445678886160529 Functional Loss - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73753317 chr7:73753320 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_79886 0 0 1 0 1 CLIP2 chr7:73753334 5'GT 73753334 Upstream 15bp
chr19 35660493 35660493 1 + G T LUAD 35660490 + 35660470 35660510 41 TGGCAAGTGCAGGCAGCTGTCCCGGTTATGCCGGAATCGTT TGGCAAGTGCAGGCAGCTGTCCCTGTTATGCCGGAATCGTT < 41bp 0.72283705467451 0.331389986100252 0.87482524 0.2414785 prediction 0.44567410934902 Functional Loss - FXYD5 ENSG00000089327 CDS Human protein_coding chr19:35660490 chr19:35660493 nonsynonymous SNV 0.024 1 24 hm5C_associated_SNPs_79887 0 0 1 0 1 FXYD5 chr19:35660469 3'AG 35660469 Downstream 25bp
chr2 108875248 108875248 1 + C T SKCM 108875246 + 108875226 108875266 41 GGTGGGCTGCAAAAGACATGCACCGGATCCTCTACCTCTTC GGTGGGCTGCAAAAGACATGCATCGGATCCTCTACCTCTTC < 41bp 0.823878899536541 0.601053125890923 0.042996526 0.14647374 prediction 0.445651547291235 Functional Loss - SULT1C3 ENSG00000196228 CDS Human protein_coding chr2:108875246 chr2:108875248 synonymous SNV . 0 23 hm5C_associated_SNPs_79891 0 0 0 0 2 SULT1C3 chr2:108875190 3'AG 108875190 Downstream 59bp
chr2 108875248 108875248 1 + C T SKCM 108875246 + 108875226 108875266 41 GGTGGGCTGCAAAAGACATGCACCGGATCCTCTACCTCTTC GGTGGGCTGCAAAAGACATGCATCGGATCCTCTACCTCTTC < 41bp 0.823878899536541 0.601053125890923 0.042996526 0.14647374 prediction 0.445651547291235 Functional Loss - SULT1C3 ENSG00000196228 CDS Human protein_coding chr2:108875246 chr2:108875248 synonymous SNV . 0 23 hm5C_associated_SNPs_79891 0 0 0 0 2 SULT1C3 chr2:108875284 5'GT 108875284 Upstream 37bp
chr5 68809847 68809847 1 + C T SKCM 68809845 + 68809825 68809865 41 AATTTTCTTTGCTGTGAAAACTCGAAGAAAGATGGACAGGT AATTTTCTTTGCTGTGAAAACTTGAAGAAAGATGGACAGGT < 41bp 0.722822053909048 0.419812702493598 0.30694544 0.11482531 prediction 0.445644107818095 Functional Loss - OCLN ENSG00000197822 CDS Human protein_coding chr5:68809845 chr5:68809847 stopgain 0.999 1 23 hm5C_associated_SNPs_79894 0 0 1 0 2 OCLN chr5:68809775 3'AG 68809775 Downstream 73bp
chr5 68809847 68809847 1 + C T SKCM 68809845 + 68809825 68809865 41 AATTTTCTTTGCTGTGAAAACTCGAAGAAAGATGGACAGGT AATTTTCTTTGCTGTGAAAACTTGAAGAAAGATGGACAGGT < 41bp 0.722822053909048 0.419812702493598 0.30694544 0.11482531 prediction 0.445644107818095 Functional Loss - OCLN ENSG00000197822 CDS Human protein_coding chr5:68809845 chr5:68809847 stopgain 0.999 1 23 hm5C_associated_SNPs_79894 0 0 1 0 2 OCLN chr5:68809936 5'GT 68809936 Upstream 90bp
chr4 189061694 189061694 1 + G A SKCM 189061691 + 189061671 189061711 41 TTCTATTGCAGGAGAAACTCCAGGAAATCCTGAATCTTTTG TTCTATTGCAGGAGAAACTCCAGAAAATCCTGAATCTTTTG < 41bp 0.743613820699946 0.520797970094742 0.31094402 0.12704766 prediction 0.445631701210407 Functional Loss - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189061691 chr4:189061694 nonsynonymous SNV 0.098 0 24 hm5C_associated_SNPs_79895 0 0 0 0 2 TRIML1 chr4:189061682 3'AG 189061682 Downstream 13bp
chr4 189061694 189061694 1 + G A SKCM 189061691 + 189061671 189061711 41 TTCTATTGCAGGAGAAACTCCAGGAAATCCTGAATCTTTTG TTCTATTGCAGGAGAAACTCCAGAAAATCCTGAATCTTTTG < 41bp 0.743613820699946 0.520797970094742 0.31094402 0.12704766 prediction 0.445631701210407 Functional Loss - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189061691 chr4:189061694 nonsynonymous SNV 0.098 0 24 hm5C_associated_SNPs_79895 0 0 0 0 2 TRIML1 chr4:189061777 5'GT 189061777 Upstream 84bp
chr2 202337730 202337730 1 + A C rs1019299 202337729 + 202337709 202337749 41 TCTTGCACGGCATACTCCCACAGGAACACTGGTAACTATAA TCTTGCACGGCATACTCCCACCGGAACACTGGTAACTATAA < 41bp 0.813769544453046 0.590955153023843 0.536053 0.16873223 prediction 0.445628782858406 Functional Loss - STRADB ENSG00000082146 CDS Human protein_coding chr2:202337729 chr2:202337730 synonymous SNV . 0 22 hm5C_associated_SNPs_79897 0 0 1 0 2 STRADB chr2:202337678 3'AG 202337678 Downstream 53bp
chr2 202337730 202337730 1 + A C rs1019299 202337729 + 202337709 202337749 41 TCTTGCACGGCATACTCCCACAGGAACACTGGTAACTATAA TCTTGCACGGCATACTCCCACCGGAACACTGGTAACTATAA < 41bp 0.813769544453046 0.590955153023843 0.536053 0.16873223 prediction 0.445628782858406 Functional Loss - STRADB ENSG00000082146 CDS Human protein_coding chr2:202337729 chr2:202337730 synonymous SNV . 0 22 hm5C_associated_SNPs_79897 0 0 1 0 2 STRADB chr2:202337799 5'GT 202337799 Upstream 70bp
chr4 78079786 78079786 1 + G T BLCA 78079783 + 78079763 78079803 41 ACAAGAAGAGAGATTCCAACCTCGAGAAAAAGGGCTGAGTT ACAAGAAGAGAGATTCCAACCTCTAGAAAAAGGGCTGAGTT < 41bp 0.919380448988676 0.696573171172851 0.58815014 0.78970957 prediction 0.44561455563165 Functional Loss - CCNG2 ENSG00000138764 CDS Human protein_coding chr4:78079783 chr4:78079786 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_79903 0 0 1 0 1 CCNG2 chr4:78079823 5'GT 78079823 Upstream 38bp
chr19 19351431 19351431 1 + G A rs2229851 19351428 + 19351408 19351448 41 GCAGGCTTTGGGCATGAAAACACGTGGATCGGCCTGAACGA GCAGGCTTTGGGCATGAAAACACATGGATCGGCCTGAACGA < 41bp 0.72280652065762 0.470329090093237 0.42141846 0.31210017 prediction 0.44561304131524 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19351428 chr19:19351431 synonymous SNV . 0 24 hm5C_associated_SNPs_79904 0 0 0 0 2 NCAN chr19:19351412 3'AG 19351412 Downstream 20bp
chr19 19351431 19351431 1 + G A rs2229851 19351428 + 19351408 19351448 41 GCAGGCTTTGGGCATGAAAACACGTGGATCGGCCTGAACGA GCAGGCTTTGGGCATGAAAACACATGGATCGGCCTGAACGA < 41bp 0.72280652065762 0.470329090093237 0.42141846 0.31210017 prediction 0.44561304131524 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19351428 chr19:19351431 synonymous SNV . 0 24 hm5C_associated_SNPs_79904 0 0 0 0 2 NCAN chr19:19351494 5'GT 19351494 Upstream 64bp
chr19 19351429 19351429 1 + A C LUSC 19351428 + 19351408 19351448 41 GCAGGCTTTGGGCATGAAAACACGTGGATCGGCCTGAACGA GCAGGCTTTGGGCATGAAAACCCGTGGATCGGCCTGAACGA < 41bp 0.72280652065762 0.454087462068166 0.42141846 0.36784002 prediction 0.44561304131524 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19351428 chr19:19351429 nonsynonymous SNV 0.821 1 22 hm5C_associated_SNPs_79905 0 0 0 0 2 NCAN chr19:19351412 3'AG 19351412 Downstream 18bp
chr19 19351429 19351429 1 + A C LUSC 19351428 + 19351408 19351448 41 GCAGGCTTTGGGCATGAAAACACGTGGATCGGCCTGAACGA GCAGGCTTTGGGCATGAAAACCCGTGGATCGGCCTGAACGA < 41bp 0.72280652065762 0.454087462068166 0.42141846 0.36784002 prediction 0.44561304131524 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19351428 chr19:19351429 nonsynonymous SNV 0.821 1 22 hm5C_associated_SNPs_79905 0 0 0 0 2 NCAN chr19:19351494 5'GT 19351494 Upstream 66bp
chr1 179605000 179605000 1 + G A UCEC 179604997 + 179604977 179605017 41 GCAGGGATTCGTCAGAGTTACTCGAAGACATGATGATTGAA GCAGGGATTCGTCAGAGTTACTCAAAGACATGATGATTGAA < 41bp 0.722805825125366 0.485963429707327 0.5186974 0.6117558 prediction 0.445611650250733 Functional Loss - TDRD5 ENSG00000162782 CDS Human protein_coding chr1:179604997 chr1:179605000 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_79906 0 0 0 0 1 TDRD5 chr1:179605022 5'GT 179605022 Upstream 23bp
chr8 99101378 99101378 1 + G A SKCM 99101375 + 99101355 99101395 41 CCCAACCAAAGCCACATGCACTGGGAAGAGAATCTACTGTT CCCAACCAAAGCCACATGCACTGAGAAGAGAATCTACTGTT < 41bp 0.779075320530837 0.556269793345485 0.6052512 0.16360423 prediction 0.445611054370705 Functional Loss - ERICH5 ENSG00000177459 CDS Human protein_coding chr8:99101375 chr8:99101378 nonsynonymous SNV 0.032 3 24 hm5C_associated_SNPs_79907 0 0 0 0 1 ERICH5 chr8:99101304 3'AG 99101304 Downstream 75bp
chr12 31254037 31254037 1 + G A UCEC 31254034 + 31254014 31254054 41 TCCAACCAGCCGCTGGAATTCACGTTCCAGAAAAGAGAGCT TCCAACCAGCCGCTGGAATTCACATTCCAGAAAAGAGAGCT < 41bp 0.735069897937147 0.512269581850827 0.29444593 0.27412617 prediction 0.445600632172639 Functional Loss - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31254034 chr12:31254037 synonymous SNV . 0 24 hm5C_associated_SNPs_79909 0 0 1 1 3 DDX11 chr12:31253961 3'AG 31253961 Downstream 77bp
chr12 31254037 31254037 1 + G A UCEC 31254034 + 31254014 31254054 41 TCCAACCAGCCGCTGGAATTCACGTTCCAGAAAAGAGAGCT TCCAACCAGCCGCTGGAATTCACATTCCAGAAAAGAGAGCT < 41bp 0.735069897937147 0.512269581850827 0.29444593 0.27412617 prediction 0.445600632172639 Functional Loss - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31254034 chr12:31254037 synonymous SNV . 0 24 hm5C_associated_SNPs_79909 0 0 1 1 3 DDX11 chr12:31253979 3'AG 31253979 Downstream 59bp
chr12 31254037 31254037 1 + G A UCEC 31254034 + 31254014 31254054 41 TCCAACCAGCCGCTGGAATTCACGTTCCAGAAAAGAGAGCT TCCAACCAGCCGCTGGAATTCACATTCCAGAAAAGAGAGCT < 41bp 0.735069897937147 0.512269581850827 0.29444593 0.27412617 prediction 0.445600632172639 Functional Loss - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31254034 chr12:31254037 synonymous SNV . 0 24 hm5C_associated_SNPs_79909 0 0 1 1 3 DDX11 chr12:31254064 5'GT 31254064 Upstream 28bp
chr6 155123231 155123231 1 + G T LUAD 155123229 + 155123209 155123249 41 GGCACAACTTACAGCTGCAGCTGCAGCTGCCAACACTCTTA GGCACAACTTACAGCTGCAGCTTCAGCTGCCAACACTCTTA < 41bp 0.722799116003592 0.390999623350717 0.18429625 0.059178203 prediction 0.445598232007185 Functional Loss - SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155123229 chr6:155123231 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_79910 0 0 1 0 1 SCAF8 chr6:155123281 5'GT 155123281 Upstream 51bp
chr18 72183552 72183552 1 + G A HNSC 72183549 + 72183529 72183569 41 TCTGGGTCTGGGGCCAAGACCGTGATTCCCAGGAAGGTGGT TCTGGGTCTGGGGCCAAGACCGTAATTCCCAGGAAGGTGGT < 41bp 0.795927847623421 0.57313109753335 0.27579734 0.2488502 prediction 0.445593500180141 Functional Loss - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72183549 chr18:72183552 synonymous SNV . 0 24 hm5C_associated_SNPs_79911 0 0 1 0 1 CNDP2 chr18:72183463 3'AG 72183463 Downstream 90bp
chr17 21825565 21825565 1 + G C rs12453514 21825561 + 21825541 21825581 41 ATCCCATCTTCAGGCCTGCCCGGAGGGTGTTCGGGTGAGTC ATCCCATCTTCAGGCCTGCCCGGACGGTGTTCGGGTGAGTC < 41bp 0.722796308326026 0.449564859754222 0.85652566 0.16276795 prediction 0.445592616652051 Functional Loss - FAM27E5 ENSG00000178130 ncRNA_exonic Human lincRNA chr17:21825561 chr17:21825565 . . 0 25 hm5C_associated_SNPs_79912 0 0 0 0 1 FAM27E5 chr17:21825574 5'GT 21825574 Upstream 10bp
chr2 231328848 231328848 1 + G A COAD 231328845 + 231328825 231328865 41 GGGCCAAGAAGCCACTTGCTCACGACCCCAGATTGTACCAG GGGCCAAGAAGCCACTTGCTCACAACCCCAGATTGTACCAG < 41bp 0.783922270250509 0.561127195069052 0.096010536 0.07854551 prediction 0.445590150362914 Functional Loss - SP100 ENSG00000067066 CDS Human protein_coding chr2:231328845 chr2:231328848 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_79913 0 0 0 0 2 SP100 chr2:231328782 3'AG 231328782 Downstream 67bp
chr2 231328848 231328848 1 + G A COAD 231328845 + 231328825 231328865 41 GGGCCAAGAAGCCACTTGCTCACGACCCCAGATTGTACCAG GGGCCAAGAAGCCACTTGCTCACAACCCCAGATTGTACCAG < 41bp 0.783922270250509 0.561127195069052 0.096010536 0.07854551 prediction 0.445590150362914 Functional Loss - SP100 ENSG00000067066 CDS Human protein_coding chr2:231328845 chr2:231328848 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_79913 0 0 0 0 2 SP100 chr2:231328865 5'GT 231328865 Upstream 18bp
chr16 66413286 66413286 1 + G A PRAD 66413283 + 66413263 66413303 41 TCGCCACATCGGGCGCCTGCCTGGGCCTGCTGGCAGTGGCA TCGCCACATCGGGCGCCTGCCTGAGCCTGCTGGCAGTGGCA < 41bp 0.811163954472451 0.588372707017588 0.87678206 0.6202665 prediction 0.445582494909726 Functional Loss - CDH5 ENSG00000179776 CDS Human protein_coding chr16:66413283 chr16:66413286 nonsynonymous SNV 0.908 1 24 hm5C_associated_SNPs_79915 0 0 0 0 1 CDH5 chr16:66413222 3'AG 66413222 Downstream 65bp
chr20 13140729 13140729 1 + C T SKCM 13140727 + 13140707 13140747 41 AGCCACTCCCCTCGCAGAAGCTCGGGCTCGGTTTTGTGTTT AGCCACTCCCCTCGCAGAAGCTTGGGCTCGGTTTTGTGTTT < 41bp 0.722790250084695 0.437605055818234 0.60341597 0.32748687 prediction 0.44558050016939 Functional Loss - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13140727 chr20:13140729 nonsynonymous SNV 0.983 5 23 hm5C_associated_SNPs_79917 0 0 0 0 2 SPTLC3 chr20:13140650 3'AG 13140650 Downstream 80bp
chr20 13140729 13140729 1 + C T SKCM 13140727 + 13140707 13140747 41 AGCCACTCCCCTCGCAGAAGCTCGGGCTCGGTTTTGTGTTT AGCCACTCCCCTCGCAGAAGCTTGGGCTCGGTTTTGTGTTT < 41bp 0.722790250084695 0.437605055818234 0.60341597 0.32748687 prediction 0.44558050016939 Functional Loss - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13140727 chr20:13140729 nonsynonymous SNV 0.983 5 23 hm5C_associated_SNPs_79917 0 0 0 0 2 SPTLC3 chr20:13140779 5'GT 13140779 Upstream 51bp
chr1 156877782 156877782 1 + G C rs145275734 156877778 + 156877758 156877798 41 TCCCAGGAATGTCGCTGCCACAACGGCGGCCTCTGTGACCG TCCCAGGAATGTCGCTGCCACAACCGCGGCCTCTGTGACCG < 41bp 0.72277956674746 0.422450569148333 0.3742609 0.11491194 prediction 0.44555913349492 Functional Loss - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156877778 chr1:156877782 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_79922 0 0 0 0 2 PEAR1 chr1:156877707 3'AG 156877707 Downstream 76bp
chr1 156877782 156877782 1 + G C rs145275734 156877778 + 156877758 156877798 41 TCCCAGGAATGTCGCTGCCACAACGGCGGCCTCTGTGACCG TCCCAGGAATGTCGCTGCCACAACCGCGGCCTCTGTGACCG < 41bp 0.72277956674746 0.422450569148333 0.3742609 0.11491194 prediction 0.44555913349492 Functional Loss - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156877778 chr1:156877782 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_79922 0 0 0 0 2 PEAR1 chr1:156877843 5'GT 156877843 Upstream 62bp
chr12 4855345 4855345 1 + G T LUAD 4855343 + 4855323 4855363 41 ATGGGCATCCTGGCTGCTAACAGGCACTTCCTGGGAGAGAT ATGGGCATCCTGGCTGCTAACATGCACTTCCTGGGAGAGAT < 41bp 0.722779437584527 0.353761874819987 0.89250416 0.372782 prediction 0.445558875169054 Functional Loss - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4855343 chr12:4855345 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_79923 0 0 0 0 1 GALNT8 chr12:4855310 3'AG 4855310 Downstream 36bp
chr11 93826736 93826736 1 + G A SKCM 93826733 + 93826713 93826753 41 CAGTACAAGAAGGTGGTTTACAGGGAATATACGGATGGAGA CAGTACAAGAAGGTGGTTTACAGAGAATATACGGATGGAGA < 41bp 0.722779431186144 0.491029946333471 0.8842042 0.5352335 prediction 0.445558862372288 Functional Loss - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93826733 chr11:93826736 synonymous SNV . 0 24 hm5C_associated_SNPs_79924 0 0 0 0 2 HEPHL1 chr11:93826667 3'AG 93826667 Downstream 70bp
chr11 93826736 93826736 1 + G A SKCM 93826733 + 93826713 93826753 41 CAGTACAAGAAGGTGGTTTACAGGGAATATACGGATGGAGA CAGTACAAGAAGGTGGTTTACAGAGAATATACGGATGGAGA < 41bp 0.722779431186144 0.491029946333471 0.8842042 0.5352335 prediction 0.445558862372288 Functional Loss - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93826733 chr11:93826736 synonymous SNV . 0 24 hm5C_associated_SNPs_79924 0 0 0 0 2 HEPHL1 chr11:93826806 5'GT 93826806 Upstream 71bp
chr2 219445452 219445452 1 + G T SARC 219445450 + 219445430 219445470 41 GCATTCATTTGGTACTATTGCAGCACTTTTACAGGTGGGTT GCATTCATTTGGTACTATTGCATCACTTTTACAGGTGGGTT < 41bp 0.722777712977417 0.380416810476858 0.5260127 0.34984934 prediction 0.445555425954835 Functional Loss - CNOT9 ENSG00000144580 CDS Human protein_coding chr2:219445450 chr2:219445452 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_79926 0 0 1 0 1 CNOT9 chr2:219445463 5'GT 219445463 Upstream 12bp
chr14 20825585 20825585 1 + G A BLCA 20825582 + 20825562 20825602 41 TAGGTCAGTGTAATGAACTACTAGAGGCCAATCCTAAGGCC TAGGTCAGTGTAATGAACTACTAAAGGCCAATCCTAAGGCC < 41bp 0.722771844090316 0.495467903911024 0.31099018 0.27251205 prediction 0.445543688180633 Functional Loss - PARP2 ENSG00000129484 CDS Human protein_coding chr14:20825582 chr14:20825585 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_79928 0 0 1 0 2 PARP2 chr14:20825555 3'AG 20825555 Downstream 31bp
chr14 20825585 20825585 1 + G A BLCA 20825582 + 20825562 20825602 41 TAGGTCAGTGTAATGAACTACTAGAGGCCAATCCTAAGGCC TAGGTCAGTGTAATGAACTACTAAAGGCCAATCCTAAGGCC < 41bp 0.722771844090316 0.495467903911024 0.31099018 0.27251205 prediction 0.445543688180633 Functional Loss - PARP2 ENSG00000129484 CDS Human protein_coding chr14:20825582 chr14:20825585 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_79928 0 0 1 0 2 PARP2 chr14:20825679 5'GT 20825679 Upstream 95bp
chr1 185240483 185240483 1 + G A SKCM 185240480 + 185240460 185240500 41 TGGCCCCAAACAGTAATTATCAAGATGTTGAGACCCTCTAT TGGCCCCAAACAGTAATTATCAAAATGTTGAGACCCTCTAT < 41bp 0.729300567837473 0.506529839158876 0.674737 0.37518162 prediction 0.445541457357193 Functional Loss - SWT1 ENSG00000116668 CDS Human protein_coding chr1:185240480 chr1:185240483 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_79929 0 0 0 0 2 SWT1 chr1:185240455 3'AG 185240455 Downstream 29bp
chr1 185240483 185240483 1 + G A SKCM 185240480 + 185240460 185240500 41 TGGCCCCAAACAGTAATTATCAAGATGTTGAGACCCTCTAT TGGCCCCAAACAGTAATTATCAAAATGTTGAGACCCTCTAT < 41bp 0.729300567837473 0.506529839158876 0.674737 0.37518162 prediction 0.445541457357193 Functional Loss - SWT1 ENSG00000116668 CDS Human protein_coding chr1:185240480 chr1:185240483 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_79929 0 0 0 0 2 SWT1 chr1:185240521 5'GT 185240521 Upstream 39bp
chr4 47525115 47525115 1 + C T UCEC 47525112 + 47525092 47525132 41 CTCCTGCAACGAGGTCATCCCTGCAGACATGGTACTACTCT CTCCTGCAACGAGGTCATCCCTGTAGACATGGTACTACTCT < 41bp 0.722767298536313 0.494542999180439 0.126746 0.06768721 prediction 0.445534597072626 Functional Loss - ATP10D ENSG00000145246 CDS Human protein_coding chr4:47525112 chr4:47525115 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_79930 0 0 0 0 1 ATP10D chr4:47525029 3'AG 47525029 Downstream 87bp
chr15 78390805 78390805 1 + C T COAD 78390803 + 78390783 78390823 41 GACCCAGAAAACCCACCTGCCACGGCATTCCTCACAGTGGT GACCCAGAAAACCCACCTGCCATGGCATTCCTCACAGTGGT < 41bp 0.722764706312051 0.470071886009197 0.32251963 0.31358236 prediction 0.445529412624103 Functional Loss - SH2D7 ENSG00000183476 CDS Human protein_coding chr15:78390803 chr15:78390805 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_79933 0 0 0 0 1 SH2D7 chr15:78390726 3'AG 78390726 Downstream 80bp
chr2 32419009 32419009 1 + G A READ 32419006 + 32418986 32419026 41 GCTCTTTGTTTCAACCTGTTCACGATGCTTTCTATTCGGAA GCTCTTTGTTTCAACCTGTTCACAATGCTTTCTATTCGGAA < 41bp 0.734877902905631 0.512116367237017 0.023176432 0.040474564 prediction 0.445523071337229 Functional Loss - SLC30A6 ENSG00000152683 CDS Human protein_coding chr2:32419006 chr2:32419009 synonymous SNV . 0 24 hm5C_associated_SNPs_79935 0 0 1 0 2 SLC30A6 chr2:32418958 3'AG 32418958 Downstream 52bp
chr2 32419009 32419009 1 + G A READ 32419006 + 32418986 32419026 41 GCTCTTTGTTTCAACCTGTTCACGATGCTTTCTATTCGGAA GCTCTTTGTTTCAACCTGTTCACAATGCTTTCTATTCGGAA < 41bp 0.734877902905631 0.512116367237017 0.023176432 0.040474564 prediction 0.445523071337229 Functional Loss - SLC30A6 ENSG00000152683 CDS Human protein_coding chr2:32419006 chr2:32419009 synonymous SNV . 0 24 hm5C_associated_SNPs_79935 0 0 1 0 2 SLC30A6 chr2:32419052 5'GT 32419052 Upstream 44bp
chr3 10219598 10219598 1 + G A CESC 10219595 + 10219575 10219615 41 CGGGTGCAGGGTGTGAGCATCACGCGGGAGCTGCTGTGGTG CGGGTGCAGGGTGTGAGCATCACACGGGAGCTGCTGTGGTG < 41bp 0.722758933607576 0.474750359105151 0.37320322 0.093122125 prediction 0.445517867215152 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10219595 chr3:10219598 synonymous SNV . 0 24 hm5C_associated_SNPs_79936 0 0 1 0 1 IRAK2 chr3:10219522 3'AG 10219522 Downstream 77bp
chr3 10219597 10219597 1 + C T PRAD 10219595 + 10219575 10219615 41 CGGGTGCAGGGTGTGAGCATCACGCGGGAGCTGCTGTGGTG CGGGTGCAGGGTGTGAGCATCATGCGGGAGCTGCTGTGGTG < 41bp 0.722758933607576 0.449177877708074 0.37320322 0.3784532 prediction 0.445517867215152 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10219595 chr3:10219597 nonsynonymous SNV 0.888 4 23 hm5C_associated_SNPs_79937 0 0 1 0 1 IRAK2 chr3:10219522 3'AG 10219522 Downstream 76bp
chr8 121326208 121326208 1 + G A SKCM 121326205 + 121326185 121326225 41 TCGGGGTGAAATTGGTCTGCCAGGACCTCAGGGTCCACCTG TCGGGGTGAAATTGGTCTGCCAGAACCTCAGGGTCCACCTG < 41bp 0.775361555296239 0.552606663557426 0.9101547 0.7407001 prediction 0.445509783477627 Functional Loss - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121326205 chr8:121326208 nonsynonymous SNV 0.905 5 24 hm5C_associated_SNPs_79940 0 0 0 0 2 COL14A1 chr8:121326171 3'AG 121326171 Downstream 38bp
chr8 121326208 121326208 1 + G A SKCM 121326205 + 121326185 121326225 41 TCGGGGTGAAATTGGTCTGCCAGGACCTCAGGGTCCACCTG TCGGGGTGAAATTGGTCTGCCAGAACCTCAGGGTCCACCTG < 41bp 0.775361555296239 0.552606663557426 0.9101547 0.7407001 prediction 0.445509783477627 Functional Loss - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121326205 chr8:121326208 nonsynonymous SNV 0.905 5 24 hm5C_associated_SNPs_79940 0 0 0 0 2 COL14A1 chr8:121326266 5'GT 121326266 Upstream 59bp
chr4 190873403 190873403 1 + G A BRCA 190873400 + 190873380 190873420 41 AGGGAACCTATATACATGCACTCGACAATGGTCTTTTTACC AGGGAACCTATATACATGCACTCAACAATGGTCTTTTTACC < 41bp 0.722750653294437 0.496191288113857 0.10352641 0.051734507 prediction 0.445501306588874 Functional Loss - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190873400 chr4:190873403 nonsynonymous SNV 0.956 1 24 hm5C_associated_SNPs_79944 0 0 1 0 2 FRG1 chr4:190873317 3'AG 190873317 Downstream 87bp
chr4 190873403 190873403 1 + G A BRCA 190873400 + 190873380 190873420 41 AGGGAACCTATATACATGCACTCGACAATGGTCTTTTTACC AGGGAACCTATATACATGCACTCAACAATGGTCTTTTTACC < 41bp 0.722750653294437 0.496191288113857 0.10352641 0.051734507 prediction 0.445501306588874 Functional Loss - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190873400 chr4:190873403 nonsynonymous SNV 0.956 1 24 hm5C_associated_SNPs_79944 0 0 1 0 2 FRG1 chr4:190873442 5'GT 190873442 Upstream 40bp
chr10 104160553 104160553 1 + T C COAD 104160552 + 104160532 104160572 41 TAGCCACAGAGATGGAGGAGCTGGGGTTGGTCACCCATCTG TAGCCACAGAGATGGAGGAGCCGGGGTTGGTCACCCATCTG < 41bp 0.775235076854005 0.552486696651262 0.8647715 0.9037366 prediction 0.445496760405484 Functional Loss - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160552 chr10:104160553 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_79945 0 0 0 0 1 NFKB2 chr10:104160581 5'GT 104160581 Upstream 29bp
chr22 33253256 33253256 1 + G A LUAD 33253253 + 33253233 33253273 41 CAGATGTACCGAGGCTTCACCAAGATGCCCCATGTGCAGTA CAGATGTACCGAGGCTTCACCAAAATGCCCCATGTGCAGTA < 41bp 0.790011356999613 0.567266823642185 0.82561374 0.22632596 prediction 0.445489066714856 Functional Loss - TIMP3 ENSG00000100234 CDS Human protein_coding chr22:33253253 chr22:33253256 synonymous SNV . 0 24 hm5C_associated_SNPs_79947 0 0 1 0 2 TIMP3 chr22:33253236 3'AG 33253236 Downstream 21bp
chr22 33253256 33253256 1 + G A LUAD 33253253 + 33253233 33253273 41 CAGATGTACCGAGGCTTCACCAAGATGCCCCATGTGCAGTA CAGATGTACCGAGGCTTCACCAAAATGCCCCATGTGCAGTA < 41bp 0.790011356999613 0.567266823642185 0.82561374 0.22632596 prediction 0.445489066714856 Functional Loss - TIMP3 ENSG00000100234 CDS Human protein_coding chr22:33253253 chr22:33253256 synonymous SNV . 0 24 hm5C_associated_SNPs_79947 0 0 1 0 2 TIMP3 chr22:33253347 5'GT 33253347 Upstream 92bp
chr8 19221662 19221662 1 + C T UCEC 19221660 + 19221640 19221680 41 AAGACTACAAGAGGTTATCCCTCGGGGCCCAGAAAGGAAGA AAGACTACAAGAGGTTATCCCTTGGGGCCCAGAAAGGAAGA < 41bp 0.859731824590416 0.636987462669838 0.0935463 0.08198786 prediction 0.445488723841157 Functional Loss - SH2D4A ENSG00000104611 CDS Human protein_coding chr8:19221660 chr8:19221662 synonymous SNV . 0 23 hm5C_associated_SNPs_79948 0 0 1 0 1 SH2D4A chr8:19221583 3'AG 19221583 Downstream 80bp
chr17 9739745 9739745 1 + G A SKCM 9739742 + 9739722 9739762 41 GTGTTGGCCTCATTCTTCTCCTGGAAATGTCTCTGTACCCT GTGTTGGCCTCATTCTTCTCCTGAAAATGTCTCTGTACCCT < 41bp 0.778845299222234 0.556104851312953 0.13088802 0.11112332 prediction 0.445480895818562 Functional Loss - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9739742 chr17:9739745 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_79951 0 0 0 0 2 GLP2R chr17:9739688 3'AG 9739688 Downstream 58bp
chr17 9739745 9739745 1 + G A SKCM 9739742 + 9739722 9739762 41 GTGTTGGCCTCATTCTTCTCCTGGAAATGTCTCTGTACCCT GTGTTGGCCTCATTCTTCTCCTGAAAATGTCTCTGTACCCT < 41bp 0.778845299222234 0.556104851312953 0.13088802 0.11112332 prediction 0.445480895818562 Functional Loss - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9739742 chr17:9739745 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_79951 0 0 0 0 2 GLP2R chr17:9739792 5'GT 9739792 Upstream 48bp
chr4 3344688 3344688 1 + G T STAD 3344686 + 3344666 3344706 41 CTCAAAATTTGGGCGGGGAACTGGACTCACTCAGCCTTCTC CTCAAAATTTGGGCGGGGAACTTGACTCACTCAGCCTTCTC < 41bp 0.722733582285339 0.395619804196483 0.65264505 0.41924083 prediction 0.445467164570678 Functional Loss - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3344686 chr4:3344688 stopgain 0.049 1 23 hm5C_associated_SNPs_79953 0 0 0 0 2 RGS12 chr4:3344664 3'AG 3344664 Downstream 25bp
chr4 3344688 3344688 1 + G T STAD 3344686 + 3344666 3344706 41 CTCAAAATTTGGGCGGGGAACTGGACTCACTCAGCCTTCTC CTCAAAATTTGGGCGGGGAACTTGACTCACTCAGCCTTCTC < 41bp 0.722733582285339 0.395619804196483 0.65264505 0.41924083 prediction 0.445467164570678 Functional Loss - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3344686 chr4:3344688 stopgain 0.049 1 23 hm5C_associated_SNPs_79953 0 0 0 0 2 RGS12 chr4:3344780 5'GT 3344780 Upstream 93bp
chr19 7986621 7986621 1 + G A SKCM 7986618 + 7986598 7986638 41 GGATCTGGCTGAGAAGATAACAGGGCCACTGGAAGAAGCCC GGATCTGGCTGAGAAGATAACAGAGCCACTGGAAGAAGCCC < 41bp 0.803329582696653 0.580602361283289 0.91619205 0.90601325 prediction 0.445454442826728 Functional Loss - SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7986618 chr19:7986621 nonsynonymous SNV 0.952 2 24 hm5C_associated_SNPs_79956 0 0 1 1 2 SNAPC2 chr19:7986590 3'AG 7986590 Downstream 32bp
chr19 7986621 7986621 1 + G A SKCM 7986618 + 7986598 7986638 41 GGATCTGGCTGAGAAGATAACAGGGCCACTGGAAGAAGCCC GGATCTGGCTGAGAAGATAACAGAGCCACTGGAAGAAGCCC < 41bp 0.803329582696653 0.580602361283289 0.91619205 0.90601325 prediction 0.445454442826728 Functional Loss - SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7986618 chr19:7986621 nonsynonymous SNV 0.952 2 24 hm5C_associated_SNPs_79956 0 0 1 1 2 SNAPC2 chr19:7986658 5'GT 7986658 Upstream 38bp
chr1 156146224 156146224 1 + C T LUSC 156146221 + 156146201 156146241 41 GAAGTCCTGGCTGTCCCCAACTCCATCCTGGAGCTCCCCTG GAAGTCCTGGCTGTCCCCAACTCTATCCTGGAGCTCCCCTG < 41bp 0.74868158370432 0.525954511684181 0.9574609 0.92777705 prediction 0.445454144040279 Functional Loss - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156146221 chr1:156146224 synonymous SNV . 0 24 hm5C_associated_SNPs_79957 0 0 0 0 1 SEMA4A chr1:156146196 3'AG 156146196 Downstream 29bp
chrX 77369388 77369388 1 + G T SARC 77369386 + 77369366 77369406 41 TTGCTGTAGAACTCAAATCTCTGCTGGGCAAGTAAGTGCCA TTGCTGTAGAACTCAAATCTCTTCTGGGCAAGTAAGTGCCA < 41bp 0.722725718695981 0.378915288447137 0.2520088 0.16022882 prediction 0.445451437391961 Functional Loss - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77369386 chrX:77369388 synonymous SNV . 0 23 hm5C_associated_SNPs_79958 0 0 1 0 1 PGK1 chrX:77369396 5'GT 77369396 Upstream 9bp
chr16 70497656 70497656 1 + G A LUAD 70497653 + 70497633 70497673 41 CTGCTGGTGGCTGCTGAACACCTGAGTGCCCGGGCAGGCTT CTGCTGGTGGCTGCTGAACACCTAAGTGCCCGGGCAGGCTT < 41bp 0.774233574817847 0.551508460026442 0.42188707 0.21161169 prediction 0.445450229582811 Functional Loss - FUK ENSG00000157353 CDS Human protein_coding chr16:70497653 chr16:70497656 synonymous SNV . 0 24 hm5C_associated_SNPs_79959 0 0 1 0 1 FUK chr16:70497677 5'GT 70497677 Upstream 22bp
chr18 72180860 72180860 1 + C T CESC 72180858 + 72180838 72180878 41 AACGAGGCCGTGGCCGCCGTCACGGAAGAGGAGCACAAGCT AACGAGGCCGTGGCCGCCGTCATGGAAGAGGAGCACAAGCT < 41bp 0.72272188169219 0.438852451130528 0.2734964 0.37366354 prediction 0.445443763384381 Functional Loss - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72180858 chr18:72180860 nonsynonymous SNV 0.020 3 23 hm5C_associated_SNPs_79960 0 0 1 0 2 CNDP2 chr18:72180794 3'AG 72180794 Downstream 67bp
chr18 72180860 72180860 1 + C T CESC 72180858 + 72180838 72180878 41 AACGAGGCCGTGGCCGCCGTCACGGAAGAGGAGCACAAGCT AACGAGGCCGTGGCCGCCGTCATGGAAGAGGAGCACAAGCT < 41bp 0.72272188169219 0.438852451130528 0.2734964 0.37366354 prediction 0.445443763384381 Functional Loss - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72180858 chr18:72180860 nonsynonymous SNV 0.020 3 23 hm5C_associated_SNPs_79960 0 0 1 0 2 CNDP2 chr18:72180954 5'GT 72180954 Upstream 95bp
chr18 72180861 72180861 1 + G T LUAD 72180858 + 72180838 72180878 41 AACGAGGCCGTGGCCGCCGTCACGGAAGAGGAGCACAAGCT AACGAGGCCGTGGCCGCCGTCACTGAAGAGGAGCACAAGCT < 41bp 0.72272188169219 0.315993288824178 0.2734964 0.07182926 prediction 0.445443763384381 Functional Loss - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72180858 chr18:72180861 synonymous SNV . 0 24 hm5C_associated_SNPs_79961 0 0 1 0 2 CNDP2 chr18:72180794 3'AG 72180794 Downstream 68bp
chr18 72180861 72180861 1 + G T LUAD 72180858 + 72180838 72180878 41 AACGAGGCCGTGGCCGCCGTCACGGAAGAGGAGCACAAGCT AACGAGGCCGTGGCCGCCGTCACTGAAGAGGAGCACAAGCT < 41bp 0.72272188169219 0.315993288824178 0.2734964 0.07182926 prediction 0.445443763384381 Functional Loss - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72180858 chr18:72180861 synonymous SNV . 0 24 hm5C_associated_SNPs_79961 0 0 1 0 2 CNDP2 chr18:72180954 5'GT 72180954 Upstream 94bp
chr2 238427251 238427251 1 + G A rs3751107 238427248 + 238427228 238427268 41 GACAGATGAGGATGGAGAACCTGGCTCAGAGGCCCAGGCCC GACAGATGAGGATGGAGAACCTGACTCAGAGGCCCAGGCCC < 41bp 0.722718247375249 0.460125130722571 0.39327627 0.22495222 prediction 0.445436494750498 Functional Loss - MLPH ENSG00000115648 CDS Human protein_coding chr2:238427248 chr2:238427251 nonsynonymous SNV 0.091 0 24 hm5C_associated_SNPs_79965 0 0 0 0 2 MLPH chr2:238427182 3'AG 238427182 Downstream 70bp
chr2 238427251 238427251 1 + G A rs3751107 238427248 + 238427228 238427268 41 GACAGATGAGGATGGAGAACCTGGCTCAGAGGCCCAGGCCC GACAGATGAGGATGGAGAACCTGACTCAGAGGCCCAGGCCC < 41bp 0.722718247375249 0.460125130722571 0.39327627 0.22495222 prediction 0.445436494750498 Functional Loss - MLPH ENSG00000115648 CDS Human protein_coding chr2:238427248 chr2:238427251 nonsynonymous SNV 0.091 0 24 hm5C_associated_SNPs_79965 0 0 0 0 2 MLPH chr2:238427291 5'GT 238427291 Upstream 41bp
chr6 35286024 35286024 1 + G A rs541285645 35286021 + 35286001 35286041 41 AGGACCTGAAGCAGAAACGGCGCGAGCAGCGGGAGCAGCGG AGGACCTGAAGCAGAAACGGCGCAAGCAGCGGGAGCAGCGG < 41bp 0.781884967197591 0.559167462162142 0.34603083 0.20152861 prediction 0.445435010070898 Functional Loss - DEF6 ENSG00000023892 CDS Human protein_coding chr6:35286021 chr6:35286024 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_79967 0 0 1 0 1 DEF6 chr6:35285950 3'AG 35285950 Downstream 75bp
chr11 67379039 67379039 1 + C T PAAD 67379037 + 67379017 67379057 41 GCGGTGATCGTCATGGACCGCTCGGTAAGGGTTCACACACC GCGGTGATCGTCATGGACCGCTTGGTAAGGGTTCACACACC < 41bp 0.821795107503653 0.599077909862453 0.07303235 0.07169819 prediction 0.4454343952824 Functional Loss - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67379037 chr11:67379039 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_79968 2 0 1 0 2 NDUFV1 chr11:67378993 3'AG 67378993 Downstream 47bp
chr11 67379039 67379039 1 + C T PAAD 67379037 + 67379017 67379057 41 GCGGTGATCGTCATGGACCGCTCGGTAAGGGTTCACACACC GCGGTGATCGTCATGGACCGCTTGGTAAGGGTTCACACACC < 41bp 0.821795107503653 0.599077909862453 0.07303235 0.07169819 prediction 0.4454343952824 Functional Loss - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67379037 chr11:67379039 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_79968 2 0 1 0 2 NDUFV1 chr11:67379040 5'GT 67379040 Upstream 2bp
chr7 100552913 100552913 1 + G A BLCA 100552910 + 100552890 100552930 41 ACAATGGTGGCACCTGGGAACAGGGACAGTGTGCTTGCCTT ACAATGGTGGCACCTGGGAACAGAGACAGTGTGCTTGCCTT < 41bp 0.776393189134444 0.553676401871201 0.8829494 0.5751913 prediction 0.445433574526485 Functional Loss - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100552910 chr7:100552913 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_79969 0 0 0 1 1 MUC3A chr7:100552881 3'AG 100552881 Downstream 33bp
chr15 81561897 81561897 1 + C T rs28571178 81561895 + 81561875 81561915 41 GCAGGGAACTTCGAGACCAACACGGTCCCTGAGCACAGCTC GCAGGGAACTTCGAGACCAACATGGTCCCTGAGCACAGCTC < 41bp 0.722714934841022 0.476943558199635 0.21650708 0.17605758 prediction 0.445429869682044 Functional Loss - IL16 ENSG00000172349 CDS Human protein_coding chr15:81561895 chr15:81561897 nonsynonymous SNV 0.250 3 23 hm5C_associated_SNPs_79970 0 0 0 0 2 IL16 chr15:81561879 3'AG 81561879 Downstream 19bp
chr15 81561897 81561897 1 + C T rs28571178 81561895 + 81561875 81561915 41 GCAGGGAACTTCGAGACCAACACGGTCCCTGAGCACAGCTC GCAGGGAACTTCGAGACCAACATGGTCCCTGAGCACAGCTC < 41bp 0.722714934841022 0.476943558199635 0.21650708 0.17605758 prediction 0.445429869682044 Functional Loss - IL16 ENSG00000172349 CDS Human protein_coding chr15:81561895 chr15:81561897 nonsynonymous SNV 0.250 3 23 hm5C_associated_SNPs_79970 0 0 0 0 2 IL16 chr15:81561989 5'GT 81561989 Upstream 93bp
chr1 236925843 236925843 1 + C T SKCM 236925841 + 236925821 236925861 41 ATCAAGAGGATGCCCGCCTACTCGGGCCCAGGCAGTGTGCC ATCAAGAGGATGCCCGCCTACTTGGGCCCAGGCAGTGTGCC < 41bp 0.836867562342426 0.614152810057948 0.12855014 0.20946929 prediction 0.445429504568956 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236925841 chr1:236925843 nonsynonymous SNV 0.809 0 23 hm5C_associated_SNPs_79971 0 0 0 0 1 ACTN2 chr1:236925761 3'AG 236925761 Downstream 83bp
chr4 49000553 49000553 1 + T C UCEC 49000552 + 49000532 49000572 41 TTTCGTGGTACTGGTTTGATCTGGTGGGTTACAGGTATGTG TTTCGTGGTACTGGTTTGATCCGGTGGGTTACAGGTATGTG < 41bp 0.738411892355836 0.515700410652556 0.26356775 0.4750595 prediction 0.44542296340656 Functional Loss - CWH43 ENSG00000109182 CDS Human protein_coding chr4:49000552 chr4:49000553 nonsynonymous SNV 0.771 3 22 hm5C_associated_SNPs_79973 0 0 0 0 2 CWH43 chr4:49000477 3'AG 49000477 Downstream 77bp
chr4 49000553 49000553 1 + T C UCEC 49000552 + 49000532 49000572 41 TTTCGTGGTACTGGTTTGATCTGGTGGGTTACAGGTATGTG TTTCGTGGTACTGGTTTGATCCGGTGGGTTACAGGTATGTG < 41bp 0.738411892355836 0.515700410652556 0.26356775 0.4750595 prediction 0.44542296340656 Functional Loss - CWH43 ENSG00000109182 CDS Human protein_coding chr4:49000552 chr4:49000553 nonsynonymous SNV 0.771 3 22 hm5C_associated_SNPs_79973 0 0 0 0 2 CWH43 chr4:49000565 5'GT 49000565 Upstream 13bp
chr17 42429721 42429721 1 + G C BLCA 42429717 + 42429697 42429737 41 CTTCCCCGCCAGGCTGTGTGCTGCGAGGATCGCCAGCACTG CTTCCCCGCCAGGCTGTGTGCTGCCAGGATCGCCAGCACTG < 41bp 0.72270897102151 0.426083668151688 0.3919836 0.1890291 prediction 0.445417942043021 Functional Loss - GRN ENSG00000030582 CDS Human protein_coding chr17:42429717 chr17:42429721 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_79977 0 0 1 0 1 GRN chr17:42429709 3'AG 42429709 Downstream 13bp
chr20 25255248 25255248 1 + G A SKCM 25255245 + 25255225 25255265 41 CAGGTAGAGGAGGCCGATGACTGGCTGCGCTACGGCAACCC CAGGTAGAGGAGGCCGATGACTGACTGCGCTACGGCAACCC < 41bp 0.792978946737617 0.570271716387567 0.57155496 0.3248036 prediction 0.445414460700099 Functional Loss - PYGB ENSG00000100994 CDS Human protein_coding chr20:25255245 chr20:25255248 stopgain 0.997 1 24 hm5C_associated_SNPs_79978 0 0 1 0 1 PYGB chr20:25255228 3'AG 25255228 Downstream 21bp
chr9 66553551 66553551 1 + G A CESC 66553548 + 66553528 66553568 41 GTGCGCGGAGATGGCTGCGACGCGTGCGCAGGTAAAGTCCA GTGCGCGGAGATGGCTGCGACGCATGCGCAGGTAAAGTCCA < 41bp 0.739552276867649 0.516853193495901 0.1903047 0.03468591 prediction 0.445398166743496 Functional Loss - LOC403323;LOC728673 ENSG00000170161;ENSG00000234665 ncRNA_exonic Human other chr9:66553548 chr9:66553551 . . 0 24 hm5C_associated_SNPs_79982 0 0 0 0 1 LOC403323;LOC728673 chr9:66553558 5'GT 66553558 Upstream 8bp
chr3 14173128 14173128 1 + C T UCEC 14173125 + 14173105 14173145 41 TCCATCTTCCGGCTGTGAAACTGCGGAGGCACGTGGAGATG TCCATCTTCCGGCTGTGAAACTGTGGAGGCACGTGGAGATG < 41bp 0.729959686075987 0.507261605375229 0.4203137 0.2079489 prediction 0.445396161401516 Functional Loss - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14173125 chr3:14173128 nonsynonymous SNV 0.957 3 24 hm5C_associated_SNPs_79984 0 0 1 0 2 TMEM43 chr3:14173080 3'AG 14173080 Downstream 49bp
chr3 14173128 14173128 1 + C T UCEC 14173125 + 14173105 14173145 41 TCCATCTTCCGGCTGTGAAACTGCGGAGGCACGTGGAGATG TCCATCTTCCGGCTGTGAAACTGTGGAGGCACGTGGAGATG < 41bp 0.729959686075987 0.507261605375229 0.4203137 0.2079489 prediction 0.445396161401516 Functional Loss - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14173125 chr3:14173128 nonsynonymous SNV 0.957 3 24 hm5C_associated_SNPs_79984 0 0 1 0 2 TMEM43 chr3:14173174 5'GT 14173174 Upstream 47bp
chr5 156635937 156635937 1 + G A READ 156635934 + 156635914 156635954 41 GAAGGGGTCCATTGAGCTCTCCCGAATCAAATGTGTTGAGA GAAGGGGTCCATTGAGCTCTCCCAAATCAAATGTGTTGAGA < 41bp 0.722697178407956 0.484997728268 0.09294468 0.06902161 prediction 0.445394356815912 Functional Loss - ITK ENSG00000113263 CDS Human protein_coding chr5:156635934 chr5:156635937 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_79986 0 0 0 0 2 ITK chr5:156635900 3'AG 156635900 Downstream 38bp
chr5 156635937 156635937 1 + G A READ 156635934 + 156635914 156635954 41 GAAGGGGTCCATTGAGCTCTCCCGAATCAAATGTGTTGAGA GAAGGGGTCCATTGAGCTCTCCCAAATCAAATGTGTTGAGA < 41bp 0.722697178407956 0.484997728268 0.09294468 0.06902161 prediction 0.445394356815912 Functional Loss - ITK ENSG00000113263 CDS Human protein_coding chr5:156635934 chr5:156635937 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_79986 0 0 0 0 2 ITK chr5:156636004 5'GT 156636004 Upstream 68bp
chr2 238434343 238434343 1 + G A LGG 238434340 + 238434320 238434360 41 CCTCTGGGTGCCACTCCCATCCGGAAGAGCAGCCGACCAGC CCTCTGGGTGCCACTCCCATCCGAAAGAGCAGCCGACCAGC < 41bp 0.808522436242474 0.585825665569088 0.82444835 0.3084814 prediction 0.445393541346772 Functional Loss - MLPH ENSG00000115648 CDS Human protein_coding chr2:238434340 chr2:238434343 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_79988 0 0 0 0 1 MLPH chr2:238434244 3'AG 238434244 Downstream 100bp
chr10 4884032 4884032 1 + G A rs138083633 4884029 + 4884009 4884049 41 TCAAGAGGATTGCAAAGGAGCACGGCAAGTCTCCTGCTCAG TCAAGAGGATTGCAAAGGAGCACAGCAAGTCTCCTGCTCAG < 41bp 0.789053095424074 0.566357575807603 0.26185265 0.102879524 prediction 0.445391039232941 Functional Loss - AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4884029 chr10:4884032 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_79989 0 0 0 1 2 AKR1E2 chr10:4883977 3'AG 4883977 Downstream 56bp
chr10 4884032 4884032 1 + G A rs138083633 4884029 + 4884009 4884049 41 TCAAGAGGATTGCAAAGGAGCACGGCAAGTCTCCTGCTCAG TCAAGAGGATTGCAAAGGAGCACAGCAAGTCTCCTGCTCAG < 41bp 0.789053095424074 0.566357575807603 0.26185265 0.102879524 prediction 0.445391039232941 Functional Loss - AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4884029 chr10:4884032 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_79989 0 0 0 1 2 AKR1E2 chr10:4884049 5'GT 4884049 Upstream 18bp
chr6 24145830 24145830 1 + G T HNSC 24145828 + 24145808 24145848 41 CCTCGGATTGACTGTTCTGGCAGTGGGCTTTCTTGTGCCCC CCTCGGATTGACTGTTCTGGCATTGGGCTTTCTTGTGCCCC < 41bp 0.722692368949036 0.373190708159267 0.65842575 0.44767678 prediction 0.445384737898072 Functional Loss - NRSN1 ENSG00000152954 CDS Human protein_coding chr6:24145828 chr6:24145830 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_79990 0 0 0 0 1 NRSN1 chr6:24145776 3'AG 24145776 Downstream 55bp
chr17 66511664 66511664 1 + C T BRCA 66511662 + 66511642 66511682 41 TATTGTGCAGTTGTGCACTGCTCGACCTGAGAGACCCATGG TATTGTGCAGTTGTGCACTGCTTGACCTGAGAGACCCATGG < 41bp 0.722690243853991 0.44487908364335 0.18083584 0.063257635 prediction 0.445380487707982 Functional Loss - PRKAR1A ENSG00000108946 CDS Human protein_coding chr17:66511662 chr17:66511664 stopgain 0.709 1 23 hm5C_associated_SNPs_79991 1 0 1 0 2 PRKAR1A chr17:66511707 5'GT 66511707 Upstream 44bp
chr17 66511664 66511664 1 + C T BRCA 66511662 + 66511642 66511682 41 TATTGTGCAGTTGTGCACTGCTCGACCTGAGAGACCCATGG TATTGTGCAGTTGTGCACTGCTTGACCTGAGAGACCCATGG < 41bp 0.722690243853991 0.44487908364335 0.18083584 0.063257635 prediction 0.445380487707982 Functional Loss - PRKAR1A ENSG00000108946 CDS Human protein_coding chr17:66511662 chr17:66511664 stopgain 0.709 1 23 hm5C_associated_SNPs_79991 1 0 1 0 2 PRKAR1A chr17:66511717 5'GT 66511717 Upstream 54bp
chr17 66511665 66511665 1 + G T HNSC 66511662 + 66511642 66511682 41 TATTGTGCAGTTGTGCACTGCTCGACCTGAGAGACCCATGG TATTGTGCAGTTGTGCACTGCTCTACCTGAGAGACCCATGG < 41bp 0.722690243853991 0.343610957554336 0.18083584 0.26263687 prediction 0.445380487707982 Functional Loss - PRKAR1A ENSG00000108946 CDS Human protein_coding chr17:66511662 chr17:66511665 nonsynonymous SNV 0.715 2 24 hm5C_associated_SNPs_79992 0 0 1 0 2 PRKAR1A chr17:66511707 5'GT 66511707 Upstream 43bp
chr17 66511665 66511665 1 + G T HNSC 66511662 + 66511642 66511682 41 TATTGTGCAGTTGTGCACTGCTCGACCTGAGAGACCCATGG TATTGTGCAGTTGTGCACTGCTCTACCTGAGAGACCCATGG < 41bp 0.722690243853991 0.343610957554336 0.18083584 0.26263687 prediction 0.445380487707982 Functional Loss - PRKAR1A ENSG00000108946 CDS Human protein_coding chr17:66511662 chr17:66511665 nonsynonymous SNV 0.715 2 24 hm5C_associated_SNPs_79992 0 0 1 0 2 PRKAR1A chr17:66511717 5'GT 66511717 Upstream 53bp
chr2 119739941 119739941 1 + G T ACC 119739939 + 119739919 119739959 41 TCCAGGACTTCCAGGGAGCCCCGGGAGTCCAGGAGCCACAG TCCAGGACTTCCAGGGAGCCCCTGGAGTCCAGGAGCCACAG < 41bp 0.722688321428874 0.357193004255511 0.90591955 0.32151812 prediction 0.445376642857748 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119739939 chr2:119739941 nonsynonymous SNV 0.700 5 23 hm5C_associated_SNPs_79993 0 0 0 0 2 MARCO chr2:119739924 3'AG 119739924 Downstream 18bp
chr2 119739941 119739941 1 + G T ACC 119739939 + 119739919 119739959 41 TCCAGGACTTCCAGGGAGCCCCGGGAGTCCAGGAGCCACAG TCCAGGACTTCCAGGGAGCCCCTGGAGTCCAGGAGCCACAG < 41bp 0.722688321428874 0.357193004255511 0.90591955 0.32151812 prediction 0.445376642857748 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119739939 chr2:119739941 nonsynonymous SNV 0.700 5 23 hm5C_associated_SNPs_79993 0 0 0 0 2 MARCO chr2:119739986 5'GT 119739986 Upstream 46bp
chr2 178081439 178081439 1 + G A UCEC 178081436 + 178081416 178081456 41 GATCTGGCAATTTTATGGGTCGCGGAGGGAACTTTGGAGGT GATCTGGCAATTTTATGGGTCGCAGAGGGAACTTTGGAGGT < 41bp 0.772216564048451 0.549529153983459 0.7514691 0.36067513 prediction 0.445374820129984 Functional Loss - HNRNPA3 ENSG00000170144 CDS Human protein_coding chr2:178081436 chr2:178081439 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_79994 0 0 1 0 1 HNRNPA3 chr2:178081499 5'GT 178081499 Upstream 61bp
chr3 186440243 186440243 1 + G A rs1469859 186440240 + 186440220 186440260 41 TTTTAGGCCACTGGAGAATGCACGGCAACCGTGGGGAAGAG TTTTAGGCCACTGGAGAATGCACAGCAACCGTGGGGAAGAG < 41bp 0.770206082121037 0.547519877222218 0.16741562 0.04739666 prediction 0.445372409797637 Functional Loss - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186440240 chr3:186440243 synonymous SNV . 0 24 hm5C_associated_SNPs_79995 0 0 0 0 2 KNG1 chr3:186440226 3'AG 186440226 Downstream 18bp
chr3 186440243 186440243 1 + G A rs1469859 186440240 + 186440220 186440260 41 TTTTAGGCCACTGGAGAATGCACGGCAACCGTGGGGAAGAG TTTTAGGCCACTGGAGAATGCACAGCAACCGTGGGGAAGAG < 41bp 0.770206082121037 0.547519877222218 0.16741562 0.04739666 prediction 0.445372409797637 Functional Loss - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186440240 chr3:186440243 synonymous SNV . 0 24 hm5C_associated_SNPs_79995 0 0 0 0 2 KNG1 chr3:186440310 5'GT 186440310 Upstream 68bp
chr1 201966602 201966602 1 + C T COAD 201966600 + 201966580 201966620 41 AGTTGGTTTGGGAACCTGGTCACCAACGCCAACTGGGGTGA AGTTGGTTTGGGAACCTGGTCATCAACGCCAACTGGGGTGA < 41bp 0.865060952887335 0.64237584485558 0.07283133 0.078888655 prediction 0.44537021606351 Functional Loss - RNPEP ENSG00000176393 CDS Human protein_coding chr1:201966600 chr1:201966602 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_79996 0 0 1 0 1 RNPEP chr1:201966682 5'GT 201966682 Upstream 81bp
chr1 151237991 151237991 1 + C T BLCA 151237988 + 151237968 151238008 41 GGCTGATGCTCTCATCAGTTCTCCGATTTTGGCTGGTGAAG GGCTGATGCTCTCATCAGTTCTCTGATTTTGGCTGGTGAAG < 41bp 0.722680802236492 0.495919776136663 0.40267384 0.32367074 prediction 0.445361604472984 Functional Loss - PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151237988 chr1:151237991 nonsynonymous SNV 0.978 4 24 hm5C_associated_SNPs_79999 0 0 1 0 1 PSMD4 chr1:151238085 5'GT 151238085 Upstream 95bp
chr13 50594403 50594403 1 + T C UCEC 50594402 + 50594382 50594422 41 TGGCCAACGGAACAAATGTCCTCGGCTTACTGATTGACACT TGGCCAACGGAACAAATGTCCCCGGCTTACTGATTGACACT < 41bp 0.733041010694911 0.510362743609253 0.27553385 0.2504372 prediction 0.445356534171316 Functional Loss - KCNRG ENSG00000198553 CDS Human protein_coding chr13:50594402 chr13:50594403 nonsynonymous SNV 0.982 3 22 hm5C_associated_SNPs_80001 0 0 0 5 1 KCNRG chr13:50594350 3'AG 50594350 Downstream 54bp
chr21 45217979 45217979 1 + C T rs117749073 45217977 + 45217957 45217997 41 AAGAGGTCTGAGAAGCCGCCCGCAGGTGGGGGTCACACTGC AAGAGGTCTGAGAAGCCGCCCGTAGGTGGGGGTCACACTGC < 41bp 0.722673050686022 0.481417150469526 0.5227737 0.59222347 prediction 0.445346101372045 Functional Loss - RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217977 chr21:45217979 nonsynonymous SNV 0.006 0 23 hm5C_associated_SNPs_80004 0 0 1 0 1 RRP1 chr21:45217981 5'GT 45217981 Upstream 3bp
chr2 113404993 113404993 1 + G A HNSC 113404990 + 113404970 113405010 41 GTGCAACTATTGGTTTCTCCCTCGTGGCAAAGGGGCAGGAG GTGCAACTATTGGTTTCTCCCTCATGGCAAAGGGGCAGGAG < 41bp 0.785278677381798 0.562612470910641 0.08730823 0.07167834 prediction 0.445332412942314 Functional Loss - SLC20A1 ENSG00000144136 CDS Human protein_coding chr2:113404990 chr2:113404993 nonsynonymous SNV 0.928 5 24 hm5C_associated_SNPs_80007 0 0 1 0 2 SLC20A1 chr2:113404901 3'AG 113404901 Downstream 93bp
chr2 113404993 113404993 1 + G A HNSC 113404990 + 113404970 113405010 41 GTGCAACTATTGGTTTCTCCCTCGTGGCAAAGGGGCAGGAG GTGCAACTATTGGTTTCTCCCTCATGGCAAAGGGGCAGGAG < 41bp 0.785278677381798 0.562612470910641 0.08730823 0.07167834 prediction 0.445332412942314 Functional Loss - SLC20A1 ENSG00000144136 CDS Human protein_coding chr2:113404990 chr2:113404993 nonsynonymous SNV 0.928 5 24 hm5C_associated_SNPs_80007 0 0 1 0 2 SLC20A1 chr2:113405041 5'GT 113405041 Upstream 49bp
chr1 22927561 22927561 1 + G A SKCM 22927558 + 22927538 22927578 41 ATCCGCAGCCCTGAGAGTCTCAGGGCCACCGCCACAGTCAG ATCCGCAGCCCTGAGAGTCTCAGAGCCACCGCCACAGTCAG < 41bp 0.799934966012413 0.577281812337255 0.93556404 0.91280365 prediction 0.445306307350318 Functional Loss - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22927558 chr1:22927561 synonymous SNV . 0 24 hm5C_associated_SNPs_80014 0 0 0 0 1 EPHA8 chr1:22927581 5'GT 22927581 Upstream 21bp
chr16 30510692 30510692 1 + A T LUAD 30510688 + 30510668 30510708 41 TTGCCAATCTCACTTACACTCTGCAGCTGGATGGCCACCGG TTGCCAATCTCACTTACACTCTGCTGCTGGATGGCCACCGG < 41bp 0.903541861302339 0.680891551718433 0.45239246 0.17883709 prediction 0.445300619167812 Functional Loss - ITGAL ENSG00000005844;ENSG00000005844 exonic;splicing Human protein_coding chr16:30510688 chr16:30510692 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_80015 0 0 0 0 1 ITGAL chr16:30510659 3'AG 30510659 Downstream 34bp
chr19 42383692 42383692 1 + C T UCEC 42383690 + 42383670 42383710 41 GGGATCATCCTCCTGTTCTGCGCGGTGGTGCCTGGGACGCT GGGATCATCCTCCTGTTCTGCGTGGTGGTGCCTGGGACGCT < 41bp 0.820468228302302 0.597819792937281 0.5077404 0.5189543 prediction 0.445296870730042 Functional Loss - CD79A ENSG00000105369 CDS Human protein_coding chr19:42383690 chr19:42383692 nonsynonymous SNV 0.808 3 23 hm5C_associated_SNPs_80017 0 0 0 0 1 CD79A chr19:42383605 3'AG 42383605 Downstream 88bp
chr16 67688097 67688097 1 + G A GBM 67688094 + 67688074 67688114 41 AAGGGAATGGGCTCAGTGCCCGCGTGGACGAGGGCGTGGAG AAGGGAATGGGCTCAGTGCCCGCATGGACGAGGGCGTGGAG < 41bp 0.784200060153091 0.561554110382342 0.19450867 0.023353964 prediction 0.445291899541498 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67688094 chr16:67688097 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_80018 0 0 1 0 2 CARMIL2 chr16:67688052 3'AG 67688052 Downstream 46bp
chr16 67688097 67688097 1 + G A GBM 67688094 + 67688074 67688114 41 AAGGGAATGGGCTCAGTGCCCGCGTGGACGAGGGCGTGGAG AAGGGAATGGGCTCAGTGCCCGCATGGACGAGGGCGTGGAG < 41bp 0.784200060153091 0.561554110382342 0.19450867 0.023353964 prediction 0.445291899541498 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67688094 chr16:67688097 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_80018 0 0 1 0 2 CARMIL2 chr16:67688152 5'GT 67688152 Upstream 56bp
chr12 78513686 78513686 1 + G A SARC 78513683 + 78513663 78513703 41 TGCACAAGGTCTCAGGCAGCCAGGATCCAAGTATCCAGATA TGCACAAGGTCTCAGGCAGCCAGAATCCAAGTATCCAGATA < 41bp 0.727570627800219 0.504929098012706 0.8617727 0.47231618 prediction 0.445283059575025 Functional Loss - NAV3 ENSG00000067798 CDS Human protein_coding chr12:78513683 chr12:78513686 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_80019 0 0 0 0 1 NAV3 chr12:78513725 5'GT 78513725 Upstream 40bp
chr4 158057798 158057798 1 + G A SKCM 158057795 + 158057775 158057815 41 CCAATTTTCATGATGTGACCCAGGAAAACATCCTCCTCTTT CCAATTTTCATGATGTGACCCAGAAAAACATCCTCCTCTTT < 41bp 0.722638345219906 0.496233979339301 0.84736663 0.30220062 prediction 0.445276690439813 Functional Loss - GLRB ENSG00000109738 CDS Human protein_coding chr4:158057795 chr4:158057798 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_80020 0 0 1 0 1 GLRB chr4:158057850 5'GT 158057850 Upstream 53bp
chr17 73517534 73517534 1 + G T SARC 73517532 + 73517512 73517552 41 AGGCAGCTTAACCTGGATGCCAGCGTGCAGCACTTGGAGGA AGGCAGCTTAACCTGGATGCCATCGTGCAGCACTTGGAGGA < 41bp 0.722633903327033 0.364633033916514 0.47969994 0.28987008 prediction 0.445267806654065 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73517532 chr17:73517534 nonsynonymous SNV 0.044 0 23 hm5C_associated_SNPs_80023 0 0 1 12 2 TSEN54 chr17:73517490 3'AG 73517490 Downstream 45bp
chr17 73517534 73517534 1 + G T SARC 73517532 + 73517512 73517552 41 AGGCAGCTTAACCTGGATGCCAGCGTGCAGCACTTGGAGGA AGGCAGCTTAACCTGGATGCCATCGTGCAGCACTTGGAGGA < 41bp 0.722633903327033 0.364633033916514 0.47969994 0.28987008 prediction 0.445267806654065 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73517532 chr17:73517534 nonsynonymous SNV 0.044 0 23 hm5C_associated_SNPs_80023 0 0 1 12 2 TSEN54 chr17:73517591 5'GT 73517591 Upstream 58bp
chr3 32495810 32495810 1 + G A rs146432122 32495807 + 32495787 32495827 41 AGGAGGACGTGTACTCCAGGCGAGGCCTCTGGACCTGTGTT AGGAGGACGTGTACTCCAGGCGAAGCCTCTGGACCTGTGTT < 41bp 0.798464217020016 0.575831066859098 0.69407636 0.14127025 prediction 0.445266300321835 Functional Loss - CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32495807 chr3:32495810 synonymous SNV . 0 24 hm5C_associated_SNPs_80025 0 0 1 0 1 CMTM7 chr3:32495733 3'AG 32495733 Downstream 78bp
chr19 15726481 15726481 1 + G A STAD 15726478 + 15726458 15726498 41 CTCAGGCCGGTGGCAGCATCCCCGTGGCTGCTCCTGCTGGT CTCAGGCCGGTGGCAGCATCCCCATGGCTGCTCCTGCTGGT < 41bp 0.722632170287022 0.496620362330087 0.88384646 0.8822651 prediction 0.445264340574043 Functional Loss - CYP4F8 ENSG00000186526 ncRNA_exonic Human protein_coding chr19:15726478 chr19:15726481 . . 0 24 hm5C_associated_SNPs_80027 0 0 0 0 1 CYP4F8 chr19:15726427 3'AG 15726427 Downstream 55bp
chr1 1268433 1268433 1 + G A BLCA 1268430 + 1268410 1268450 41 AGGGCTCAGTGCCCAGGCTCCACGACGTGGGCAGGTTCAAC AGGGCTCAGTGCCCAGGCTCCACAACGTGGGCAGGTTCAAC < 41bp 0.793476065277565 0.570850955754582 0.27670705 0.2678949 prediction 0.445250219045966 Functional Loss - TAS1R3 ENSG00000169962 CDS Human protein_coding chr1:1268430 chr1:1268433 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_80031 0 0 1 0 1 TAS1R3 chr1:1268504 5'GT 1268504 Upstream 72bp
chr10 118203952 118203952 1 + G C SKCM 118203951 + 118203931 118203971 41 TAGATTGGATCAACGGTTCACGGGAATACATCCATGCTGTA TAGATTGGATCAACGGTTCACCGGAATACATCCATGCTGTA < 41bp 0.873431770471998 0.650807083972923 0.3078313 0.15348306 prediction 0.44524937299815 Functional Loss - PNLIPRP3 ENSG00000203837 CDS Human protein_coding chr10:118203951 chr10:118203952 nonsynonymous SNV 0.002 2 22 hm5C_associated_SNPs_80032 0 0 0 0 2 PNLIPRP3 chr10:118203894 3'AG 118203894 Downstream 59bp
chr10 118203952 118203952 1 + G C SKCM 118203951 + 118203931 118203971 41 TAGATTGGATCAACGGTTCACGGGAATACATCCATGCTGTA TAGATTGGATCAACGGTTCACCGGAATACATCCATGCTGTA < 41bp 0.873431770471998 0.650807083972923 0.3078313 0.15348306 prediction 0.44524937299815 Functional Loss - PNLIPRP3 ENSG00000203837 CDS Human protein_coding chr10:118203951 chr10:118203952 nonsynonymous SNV 0.002 2 22 hm5C_associated_SNPs_80032 0 0 0 0 2 PNLIPRP3 chr10:118204025 5'GT 118204025 Upstream 74bp
chr10 94392288 94392288 1 + C T SKCM 94392285 + 94392265 94392305 41 CTACAAAAGATGTATCTGGTCTCCATTCCAAACTGGATCGT CTACAAAAGATGTATCTGGTCTCTATTCCAAACTGGATCGT < 41bp 0.722621677841889 0.487087658920183 0.924469 0.57700354 prediction 0.445243355683778 Functional Loss - KIF11 ENSG00000138160 CDS Human protein_coding chr10:94392285 chr10:94392288 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_80034 0 0 1 0 1 KIF11 chr10:94392243 3'AG 94392243 Downstream 46bp
chr7 73101384 73101384 1 + G T LUAD 73101382 + 73101362 73101402 41 TGCTGCTGGGGGATATGGGCCAGGGCATCCCATTCAAGCCA TGCTGCTGGGGGATATGGGCCATGGCATCCCATTCAAGCCA < 41bp 0.722613558332727 0.367613780098968 0.6860567 0.04970163 prediction 0.445227116665454 Functional Loss - BUD23 ENSG00000071462 CDS Human protein_coding chr7:73101382 chr7:73101384 nonsynonymous SNV 0.979 0 23 hm5C_associated_SNPs_80039 0 0 1 0 2 BUD23 chr7:73101329 3'AG 73101329 Downstream 56bp
chr7 73101384 73101384 1 + G T LUAD 73101382 + 73101362 73101402 41 TGCTGCTGGGGGATATGGGCCAGGGCATCCCATTCAAGCCA TGCTGCTGGGGGATATGGGCCATGGCATCCCATTCAAGCCA < 41bp 0.722613558332727 0.367613780098968 0.6860567 0.04970163 prediction 0.445227116665454 Functional Loss - BUD23 ENSG00000071462 CDS Human protein_coding chr7:73101382 chr7:73101384 nonsynonymous SNV 0.979 0 23 hm5C_associated_SNPs_80039 0 0 1 0 2 BUD23 chr7:73101425 5'GT 73101425 Upstream 42bp
chr17 56402928 56402928 1 - C T LGG 56402931 - 56402911 56402951 41 GCTGCCTTGCAGCGGGAGTGCAGGGAGCTGCAGGCCAGGCT GCTGCCTTGCAGCGGGAGTGCAGAGAGCTGCAGGCCAGGCT < 41bp 0.722612508627702 0.479302314484519 0.9084339 0.87074876 prediction 0.445225017255405 Functional Loss - TSPOAP1 ENSG00000005379 CDS Human protein_coding chr17:56402931 chr17:56402928 synonymous SNV . 0 24 hm5C_associated_SNPs_80041 0 0 0 0 1 TSPOAP1 chr17:56402895 5'GT 56402895 Upstream 34bp
chr2 233410294 233410294 1 + C T rs2099489 233410292 + 233410272 233410312 41 TGGTGGGCCGAGTGCTGGACCGCGTCTGCTTCCTGGCCATG TGGTGGGCCGAGTGCTGGACCGTGTCTGCTTCCTGGCCATG < 41bp 0.72259984434726 0.466503730262246 0.039313912 0.025660932 prediction 0.44519968869452 Functional Loss - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233410292 chr2:233410294 synonymous SNV . 0 23 hm5C_associated_SNPs_80047 2 0 0 0 1 CHRNG chr2:233410253 3'AG 233410253 Downstream 42bp
chr2 233410295 233410295 1 + G A UCEC 233410292 + 233410272 233410312 41 TGGTGGGCCGAGTGCTGGACCGCGTCTGCTTCCTGGCCATG TGGTGGGCCGAGTGCTGGACCGCATCTGCTTCCTGGCCATG < 41bp 0.72259984434726 0.47177744532655 0.039313912 0.018201143 prediction 0.44519968869452 Functional Loss - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233410292 chr2:233410295 nonsynonymous SNV 0.977 2 24 hm5C_associated_SNPs_80048 1 0 0 0 1 CHRNG chr2:233410253 3'AG 233410253 Downstream 43bp
chr14 65197885 65197885 1 + C T LUSC 65197882 + 65197862 65197902 41 GGCATGAGCACGCGGTCCGGCTCCAGGTGCTCTGGGGCTGG GGCATGAGCACGCGGTCCGGCTCTAGGTGCTCTGGGGCTGG < 41bp 0.72360242052075 0.501003366740889 0.7028878 0.2636075 prediction 0.445198107559722 Functional Loss - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65197882 chr14:65197885 stopgain 0.696 1 24 hm5C_associated_SNPs_80049 0 0 1 0 1 PLEKHG3 chr14:65197887 5'GT 65197887 Upstream 3bp
chr16 30035054 30035054 1 + G A LUAD 30035051 + 30035031 30035071 41 GTTTGCTTGGGTCCTAGCACCCAGACCCAAGCGTGCCACGG GTTTGCTTGGGTCCTAGCACCCAAACCCAAGCGTGCCACGG < 41bp 0.788203799884041 0.565608744635353 0.2917605 0.115226954 prediction 0.445190110497376 Functional Loss - C16orf92 ENSG00000167194 CDS Human protein_coding chr16:30035051 chr16:30035054 nonsynonymous SNV 0.010 1 24 hm5C_associated_SNPs_80054 0 0 0 0 1 C16orf92 chr16:30035048 3'AG 30035048 Downstream 7bp
chr12 110032871 110032871 1 + C T GBM 110032869 + 110032849 110032889 41 ACCAGCACCATCTGAATGCCCTCGGCGTGGGCCACGCCTCT ACCAGCACCATCTGAATGCCCTTGGCGTGGGCCACGCCTCT < 41bp 0.722591093109289 0.442495671545154 0.14224342 0.10024482 prediction 0.445182186218577 Functional Loss - MVK ENSG00000110921 CDS Human protein_coding chr12:110032869 chr12:110032871 synonymous SNV . 0 23 hm5C_associated_SNPs_80057 1 0 1 0 1 MVK chr12:110032833 3'AG 110032833 Downstream 39bp
chr1 236703961 236703961 1 + C T UCEC 236703959 + 236703939 236703979 41 TATGGCAAAGTGAATATTCACTCAATTGGTTTTAGCTTCAG TATGGCAAAGTGAATATTCACTTAATTGGTTTTAGCTTCAG < 41bp 0.722590525628456 0.432908552570324 0.2846455 0.18966788 prediction 0.445181051256911 Functional Loss - LGALS8 ENSG00000116977 CDS Human protein_coding chr1:236703959 chr1:236703961 nonsynonymous SNV 0.121 4 23 hm5C_associated_SNPs_80059 0 0 0 0 2 LGALS8 chr1:236703864 3'AG 236703864 Downstream 98bp
chr1 236703961 236703961 1 + C T UCEC 236703959 + 236703939 236703979 41 TATGGCAAAGTGAATATTCACTCAATTGGTTTTAGCTTCAG TATGGCAAAGTGAATATTCACTTAATTGGTTTTAGCTTCAG < 41bp 0.722590525628456 0.432908552570324 0.2846455 0.18966788 prediction 0.445181051256911 Functional Loss - LGALS8 ENSG00000116977 CDS Human protein_coding chr1:236703959 chr1:236703961 nonsynonymous SNV 0.121 4 23 hm5C_associated_SNPs_80059 0 0 0 0 2 LGALS8 chr1:236703983 5'GT 236703983 Upstream 23bp
chr6 7579933 7579933 1 + G A rs28763964 7579930 + 7579910 7579950 41 GCCATCAAGGAGAAGGAGTACGAGATTGAAAGGTTGAGGGT GCCATCAAGGAGAAGGAGTACGAAATTGAAAGGTTGAGGGT < 41bp 0.730516966551852 0.50792999530093 0.43786067 0.18081856 prediction 0.445173942501844 Functional Loss - DSP ENSG00000096696 CDS Human protein_coding chr6:7579930 chr6:7579933 synonymous SNV . 0 24 hm5C_associated_SNPs_80060 8 0 1 0 1 DSP chr6:7580005 5'GT 7580005 Upstream 73bp
chr12 56536096 56536096 1 + G A LUSC 56536093 + 56536073 56536113 41 GGGGTGAGGGCACTGGCGTGCTGGGCTCATTATCCCTGCCC GGGGTGAGGGCACTGGCGTGCTGAGCTCATTATCCCTGCCC < 41bp 0.798269355858731 0.575690331699966 0.8325645 0.7154845 prediction 0.445158048317531 Functional Loss - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56536093 chr12:56536096 nonsynonymous SNV 0.352 4 24 hm5C_associated_SNPs_80064 0 0 1 0 1 ESYT1 chr12:56536069 3'AG 56536069 Downstream 28bp
chr9 34514409 34514409 1 + C T BLCA 34514406 + 34514386 34514426 41 GACCAGTGCTCTAAATCCTACTCCAGCCAATTCCTCGACAC GACCAGTGCTCTAAATCCTACTCTAGCCAATTCCTCGACAC < 41bp 0.741063488839542 0.518487674695609 0.88013864 0.37885025 prediction 0.445151628287866 Functional Loss - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34514406 chr9:34514409 synonymous SNV . 0 24 hm5C_associated_SNPs_80065 0 0 0 0 1 DNAI1 chr9:34514392 3'AG 34514392 Downstream 18bp
chr8 19221664 19221664 1 + G C rs877386 19221660 + 19221640 19221680 41 AAGACTACAAGAGGTTATCCCTCGGGGCCCAGAAAGGAAGA AAGACTACAAGAGGTTATCCCTCGCGGCCCAGAAAGGAAGA < 41bp 0.859731824590416 0.637156311243683 0.0935463 0.21813557 prediction 0.445151026693467 Functional Loss - SH2D4A ENSG00000104611 CDS Human protein_coding chr8:19221660 chr8:19221664 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_80066 0 0 1 0 1 SH2D4A chr8:19221583 3'AG 19221583 Downstream 82bp
chr10 135368917 135368917 1 - C T SKCM 135368920 - 135368900 135368940 41 TGAAGGAAGAGCTGGAAAAGCATGGAATGCAAGTCCCTGCC TGAAGGAAGAGCTGGAAAAGCATAGAATGCAAGTCCCTGCC < 41bp 0.792959812942541 0.570384660356925 0.27032453 0.104280144 prediction 0.445150305171232 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135368920 chr10:135368917 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_80067 0 0 0 0 2 SYCE1 chr10:135368855 5'GT 135368855 Upstream 63bp
chr10 135368917 135368917 1 - C T SKCM 135368920 - 135368900 135368940 41 TGAAGGAAGAGCTGGAAAAGCATGGAATGCAAGTCCCTGCC TGAAGGAAGAGCTGGAAAAGCATAGAATGCAAGTCCCTGCC < 41bp 0.792959812942541 0.570384660356925 0.27032453 0.104280144 prediction 0.445150305171232 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135368920 chr10:135368917 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_80067 0 0 0 0 2 SYCE1 chr10:135368942 3'AG 135368942 Downstream 26bp
chr15 66821212 66821212 1 + C T HNSC 66821209 + 66821189 66821229 41 GACCTTGAAGCATGACACTGCTGCAGTCGATCGTTCCGTCA GACCTTGAAGCATGACACTGCTGTAGTCGATCGTTCCGTCA < 41bp 0.727542782843995 0.504972525913577 0.19590962 0.19795594 prediction 0.445140513860836 Functional Loss - ZWILCH ENSG00000174442 CDS Human protein_coding chr15:66821209 chr15:66821212 nonsynonymous SNV 0.080 3 24 hm5C_associated_SNPs_80071 0 0 1 0 2 ZWILCH chr15:66821190 3'AG 66821190 Downstream 23bp
chr15 66821212 66821212 1 + C T HNSC 66821209 + 66821189 66821229 41 GACCTTGAAGCATGACACTGCTGCAGTCGATCGTTCCGTCA GACCTTGAAGCATGACACTGCTGTAGTCGATCGTTCCGTCA < 41bp 0.727542782843995 0.504972525913577 0.19590962 0.19795594 prediction 0.445140513860836 Functional Loss - ZWILCH ENSG00000174442 CDS Human protein_coding chr15:66821209 chr15:66821212 nonsynonymous SNV 0.080 3 24 hm5C_associated_SNPs_80071 0 0 1 0 2 ZWILCH chr15:66821295 5'GT 66821295 Upstream 84bp
chr5 161119138 161119138 1 + C T COAD 161119136 + 161119116 161119156 41 ACAGAAGGCCAAAAGGAAGGCACAGTTTGCAGCCCCACCCA ACAGAAGGCCAAAAGGAAGGCATAGTTTGCAGCCCCACCCA < 41bp 0.722570206624504 0.455365663126277 0.090714306 0.11935061 prediction 0.445140413249009 Functional Loss - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161119136 chr5:161119138 stopgain 0.623 0 23 hm5C_associated_SNPs_80072 0 0 0 0 1 GABRA6 chr5:161119206 5'GT 161119206 Upstream 69bp
chr20 13260370 13260370 1 + C T CESC 13260368 + 13260348 13260388 41 CCAGCTGGTCAGTCCCATCCCCCGACTGGCGGGCCTGGTGG CCAGCTGGTCAGTCCCATCCCCTGACTGGCGGGCCTGGTGG < 41bp 0.857353613653203 0.634791157690139 0.06055531 0.088519335 prediction 0.445124911926127 Functional Loss - ISM1 ENSG00000101230 CDS Human protein_coding chr20:13260368 chr20:13260370 synonymous SNV . 0 23 hm5C_associated_SNPs_80074 0 0 0 0 1 ISM1 chr20:13260281 3'AG 13260281 Downstream 90bp
chr1 158225089 158225089 1 + A T SKCM 158225085 + 158225065 158225105 41 GAAACATTATTCCGTATACGCACCATTCGGTCATTTGAGGG GAAACATTATTCCGTATACGCACCTTTCGGTCATTTGAGGG < 41bp 0.722560454587321 0.389552536457996 0.073551655 0.023790956 prediction 0.445120909174642 Functional Loss - CD1A ENSG00000158477 CDS Human protein_coding chr1:158225085 chr1:158225089 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_80076 0 0 0 0 1 CD1A chr1:158225140 5'GT 158225140 Upstream 52bp
chr17 40843935 40843935 1 + C T UCEC 40843933 + 40843913 40843953 41 TACTTCAGGACCTCTGCTCCCTCGGGGGTCTTCCTAGAGAA TACTTCAGGACCTCTGCTCCCTTGGGGGTCTTCCTAGAGAA < 41bp 0.851689587288513 0.629133074568269 0.15498751 0.1376501 prediction 0.445113025440486 Functional Loss - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40843933 chr17:40843935 nonsynonymous SNV 0.740 2 23 hm5C_associated_SNPs_80078 0 0 0 0 1 CNTNAP1 chr17:40844009 5'GT 40844009 Upstream 75bp
chr20 43936878 43936878 1 + G T GBM 43936875 + 43936855 43936895 41 AAGCCGACAGGCGGAGCCTCCCGGGCACTTGGACCAGGTAA AAGCCGACAGGCGGAGCCTCCCGTGCACTTGGACCAGGTAA < 41bp 0.722551153670537 0.322811569687823 0.8892008 0.20563507 prediction 0.445102307341075 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43936875 chr20:43936878 nonsynonymous SNV 0.083 2 24 hm5C_associated_SNPs_80079 0 0 0 0 2 RBPJL chr20:43936783 3'AG 43936783 Downstream 96bp
chr20 43936878 43936878 1 + G T GBM 43936875 + 43936855 43936895 41 AAGCCGACAGGCGGAGCCTCCCGGGCACTTGGACCAGGTAA AAGCCGACAGGCGGAGCCTCCCGTGCACTTGGACCAGGTAA < 41bp 0.722551153670537 0.322811569687823 0.8892008 0.20563507 prediction 0.445102307341075 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43936875 chr20:43936878 nonsynonymous SNV 0.083 2 24 hm5C_associated_SNPs_80079 0 0 0 0 2 RBPJL chr20:43936891 5'GT 43936891 Upstream 14bp
chr11 6291950 6291950 1 + G A ESCA 6291947 + 6291927 6291967 41 CGTGGCCTACGGGCTTATCTCTCGCGAGCTCTACTTAGGGC CGTGGCCTACGGGCTTATCTCTCACGAGCTCTACTTAGGGC < 41bp 0.799691163316734 0.577141141658024 0.29369652 0.07697746 prediction 0.445100043317419 Functional Loss - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6291947 chr11:6291950 nonsynonymous SNV 0.989 2 24 hm5C_associated_SNPs_80080 0 0 0 0 3 CCKBR chr11:6291876 3'AG 6291876 Downstream 75bp
chr11 6291950 6291950 1 + G A ESCA 6291947 + 6291927 6291967 41 CGTGGCCTACGGGCTTATCTCTCGCGAGCTCTACTTAGGGC CGTGGCCTACGGGCTTATCTCTCACGAGCTCTACTTAGGGC < 41bp 0.799691163316734 0.577141141658024 0.29369652 0.07697746 prediction 0.445100043317419 Functional Loss - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6291947 chr11:6291950 nonsynonymous SNV 0.989 2 24 hm5C_associated_SNPs_80080 0 0 0 0 3 CCKBR chr11:6292033 5'GT 6292033 Upstream 84bp
chr11 6291950 6291950 1 + G A ESCA 6291947 + 6291927 6291967 41 CGTGGCCTACGGGCTTATCTCTCGCGAGCTCTACTTAGGGC CGTGGCCTACGGGCTTATCTCTCACGAGCTCTACTTAGGGC < 41bp 0.799691163316734 0.577141141658024 0.29369652 0.07697746 prediction 0.445100043317419 Functional Loss - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6291947 chr11:6291950 nonsynonymous SNV 0.989 2 24 hm5C_associated_SNPs_80080 0 0 0 0 3 CCKBR chr11:6292048 5'GT 6292048 Upstream 99bp
chr1 160181469 160181469 1 + G A SKCM 160181466 + 160181446 160181486 41 GAGATCACTACTGGCAGTGCCTGGTTTAGCTTCCTGGAGAG GAGATCACTACTGGCAGTGCCTGATTTAGCTTCCTGGAGAG < 41bp 0.722545744507233 0.476300062942246 0.2117863 0.06449643 prediction 0.445091489014467 Functional Loss - PEA15 ENSG00000162734 CDS Human protein_coding chr1:160181466 chr1:160181469 stopgain 1.000 1 24 hm5C_associated_SNPs_80083 0 0 1 0 1 PEA15 chr1:160181506 5'GT 160181506 Upstream 38bp
chr12 82752528 82752528 1 + C T UCEC 82752526 + 82752506 82752546 41 ACCGGAGACAGTGCTGGCTGCGCTGAGGAAGTCAGCGTCGG ACCGGAGACAGTGCTGGCTGCGTTGAGGAAGTCAGCGTCGG < 41bp 0.75253426264822 0.529990610011523 0.19225153 0.17738768 prediction 0.445087305273395 Functional Loss - METTL25 ENSG00000127720 CDS Human protein_coding chr12:82752526 chr12:82752528 synonymous SNV . 0 23 hm5C_associated_SNPs_80085 0 0 0 0 1 METTL25 chr12:82752603 5'GT 82752603 Upstream 76bp
chr16 72130354 72130354 1 + G A GBM 72130351 + 72130331 72130371 41 CTGAGGAAGAGGGCGGTGACCAGGCTGGCCAAAATATCCGG CTGAGGAAGAGGGCGGTGACCAGACTGGCCAAAATATCCGG < 41bp 0.779137029645627 0.556595722063287 0.87473845 0.8417299 prediction 0.44508261516468 Functional Loss - DHX38 ENSG00000140829;ENSG00000140829 exonic;splicing Human protein_coding chr16:72130351 chr16:72130354 nonsynonymous SNV 0.900 0 24 hm5C_associated_SNPs_80086 0 0 1 0 1 DHX38 chr16:72130379 5'GT 72130379 Upstream 26bp
chr17 62522265 62522265 1 + G A BLCA 62522262 + 62522242 62522282 41 CAAGAAAGAGATTAACAGAACAAGAATTACATGATGTATCA CAAGAAAGAGATTAACAGAACAAAAATTACATGATGTATCA < 41bp 0.732968347905836 0.510427738995114 0.52065724 0.30914778 prediction 0.445081217821444 Functional Loss - CEP95 ENSG00000258890 CDS Human protein_coding chr17:62522262 chr17:62522265 nonsynonymous SNV 0.755 1 24 hm5C_associated_SNPs_80087 0 0 1 1 1 CEP95 chr17:62522189 3'AG 62522189 Downstream 77bp
chr2 27873016 27873016 1 + G T UCEC 27873014 + 27872994 27873034 41 GCCATGAAGAGCCAGCATTCCAGAATTTTATGCAAGAATCG GCCATGAAGAGCCAGCATTCCATAATTTTATGCAAGAATCG < 41bp 0.72253914394043 0.403201364121348 0.3729149 0.13145211 prediction 0.445078287880859 Functional Loss - GPN1 ENSG00000198522 CDS Human protein_coding chr2:27873014 chr2:27873016 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_80089 0 0 1 0 1 GPN1 chr2:27872982 3'AG 27872982 Downstream 35bp
chr6 42147049 42147049 1 + C T COAD 42147047 + 42147027 42147067 41 GATGCTCCTGGACACACTGACACGAAGCCTGGACCTTACCC GATGCTCCTGGACACACTGACATGAAGCCTGGACCTTACCC < 41bp 0.840846258730657 0.61830801991458 0.19333127 0.26369962 prediction 0.445076477632153 Functional Loss - GUCA1A ENSG00000048545 CDS Human protein_coding chr6:42147047 chr6:42147049 stopgain 0.950 0 23 hm5C_associated_SNPs_80091 0 0 0 0 1 GUCA1A chr6:42146981 3'AG 42146981 Downstream 69bp
chr11 113857438 113857438 1 + A T LUAD 113857434 + 113857414 113857454 41 ACGCTGCCGGCCACTGCCATCGGCACTCCTCTCATTGGTAA ACGCTGCCGGCCACTGCCATCGGCTCTCCTCTCATTGGTAA < 41bp 0.895012107104805 0.672485263396787 0.32622394 0.30525446 prediction 0.445053687416036 Functional Loss - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113857434 chr11:113857438 nonsynonymous SNV 0.959 4 25 hm5C_associated_SNPs_80094 0 0 0 1 1 HTR3A chr11:113857450 5'GT 113857450 Upstream 13bp
chr3 127981029 127981029 1 + G A UCEC 127981026 + 127981006 127981046 41 AGCCGGGGGGACCAGAGGCCCCCGAAACTGAAGCTCCACAG AGCCGGGGGGACCAGAGGCCCCCAAAACTGAAGCTCCACAG < 41bp 0.737165864259804 0.514644328169634 0.84713364 0.50505716 prediction 0.445043072180341 Functional Loss - EEFSEC ENSG00000132394 CDS Human protein_coding chr3:127981026 chr3:127981029 nonsynonymous SNV 0.897 2 24 hm5C_associated_SNPs_80095 0 0 1 0 2 EEFSEC chr3:127980971 3'AG 127980971 Downstream 59bp
chr3 127981029 127981029 1 + G A UCEC 127981026 + 127981006 127981046 41 AGCCGGGGGGACCAGAGGCCCCCGAAACTGAAGCTCCACAG AGCCGGGGGGACCAGAGGCCCCCAAAACTGAAGCTCCACAG < 41bp 0.737165864259804 0.514644328169634 0.84713364 0.50505716 prediction 0.445043072180341 Functional Loss - EEFSEC ENSG00000132394 CDS Human protein_coding chr3:127981026 chr3:127981029 nonsynonymous SNV 0.897 2 24 hm5C_associated_SNPs_80095 0 0 1 0 2 EEFSEC chr3:127981067 5'GT 127981067 Upstream 39bp
chr12 6342621 6342621 1 + C T ACC 6342618 + 6342598 6342638 41 GATATTCGCCATTGAAATAGCTGCGGCCATCTGGGGATATT GATATTCGCCATTGAAATAGCTGTGGCCATCTGGGGATATT < 41bp 0.72444214984617 0.501921679403149 0.2173962 0.06261051 prediction 0.445040940886043 Functional Loss - CD9 ENSG00000010278 CDS Human protein_coding chr12:6342618 chr12:6342621 nonsynonymous SNV 0.854 3 24 hm5C_associated_SNPs_80097 0 0 1 0 2 CD9 chr12:6342578 3'AG 6342578 Downstream 44bp
chr12 6342621 6342621 1 + C T ACC 6342618 + 6342598 6342638 41 GATATTCGCCATTGAAATAGCTGCGGCCATCTGGGGATATT GATATTCGCCATTGAAATAGCTGTGGCCATCTGGGGATATT < 41bp 0.72444214984617 0.501921679403149 0.2173962 0.06261051 prediction 0.445040940886043 Functional Loss - CD9 ENSG00000010278 CDS Human protein_coding chr12:6342618 chr12:6342621 nonsynonymous SNV 0.854 3 24 hm5C_associated_SNPs_80097 0 0 1 0 2 CD9 chr12:6342652 5'GT 6342652 Upstream 32bp
chr11 76114892 76114892 1 + G T UCEC 76114889 + 76114869 76114909 41 GAGCGAGGAGTGCTGATGTACAAGGGCAGGAGAAGATGGAT GAGCGAGGAGTGCTGATGTACAATGGCAGGAGAAGATGGAT < 41bp 0.722516845139178 0.336266259732125 0.35383606 0.14316687 prediction 0.445033690278356 Functional Loss - LOC100506127 ENSG00000179240 CDS Human protein_coding chr11:76114889 chr11:76114892 nonsynonymous SNV 0.007 1 24 hm5C_associated_SNPs_80099 0 0 0 0 1 LOC100506127 chr11:76114965 5'GT 76114965 Upstream 74bp
chr1 71702825 71702825 1 + C T rs199791881 71702823 + 71702803 71702843 41 TTATAAACAGGAAGCTCTTCCACGAGTTCACGAATGGAAAT TTATAAACAGGAAGCTCTTCCATGAGTTCACGAATGGAAAT < 41bp 0.743887725922335 0.521370949166161 0.13983041 0.08037472 prediction 0.445033553512348 Functional Loss - ZRANB2-AS2 ENSG00000229956 ncRNA_exonic Human processed_transcript chr1:71702823 chr1:71702825 . . 0 23 hm5C_associated_SNPs_80100 0 0 0 0 1 ZRANB2-AS2 chr1:71702813 3'AG 71702813 Downstream 13bp
chr11 47270510 47270510 1 + A C rs532907382 47270509 + 47270489 47270529 41 AGTCTCGGTGGGATTGCGTGCAGGAGGGTCGTGGTCTGGCT AGTCTCGGTGGGATTGCGTGCCGGAGGGTCGTGGTCTGGCT < 41bp 0.771722537820273 0.549206146409305 0.9062089 0.8851625 prediction 0.445032782821936 Functional Loss - NR1H3 ENSG00000025434 UTR5 Human protein_coding chr11:47270509 chr11:47270510 . . 0 22 hm5C_associated_SNPs_80101 0 0 1 0 1 NR1H3 chr11:47270550 5'GT 47270550 Upstream 41bp
chr14 92958565 92958565 1 + T C LUSC 92958564 + 92958544 92958584 41 TCTATTCCGTGGTCCTGTTGCTGGGCTCTGTCGCTCTCACC TCTATTCCGTGGTCCTGTTGCCGGGCTCTGTCGCTCTCACC < 41bp 0.722514183317541 0.478313113345776 0.81785053 0.9345397 prediction 0.445028366635082 Functional Loss - SLC24A4 ENSG00000140090 CDS Human protein_coding chr14:92958564 chr14:92958565 nonsynonymous SNV 0.991 4 22 hm5C_associated_SNPs_80102 0 0 0 0 2 SLC24A4 chr14:92958519 3'AG 92958519 Downstream 47bp
chr14 92958565 92958565 1 + T C LUSC 92958564 + 92958544 92958584 41 TCTATTCCGTGGTCCTGTTGCTGGGCTCTGTCGCTCTCACC TCTATTCCGTGGTCCTGTTGCCGGGCTCTGTCGCTCTCACC < 41bp 0.722514183317541 0.478313113345776 0.81785053 0.9345397 prediction 0.445028366635082 Functional Loss - SLC24A4 ENSG00000140090 CDS Human protein_coding chr14:92958564 chr14:92958565 nonsynonymous SNV 0.991 4 22 hm5C_associated_SNPs_80102 0 0 0 0 2 SLC24A4 chr14:92958584 5'GT 92958584 Upstream 20bp
chr9 34514481 34514481 1 + C T UCEC 34514478 + 34514458 34514498 41 GTGTCCTGGAACCCATACCACACCAAGGTCTTCATGTCCTG GTGTCCTGGAACCCATACCACACTAAGGTCTTCATGTCCTG < 41bp 0.734272440401411 0.511759050332498 0.03411627 0.056717843 prediction 0.445026780137826 Functional Loss - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34514478 chr9:34514481 synonymous SNV . 0 24 hm5C_associated_SNPs_80104 0 0 0 0 2 DNAI1 chr9:34514392 3'AG 34514392 Downstream 90bp
chr9 34514481 34514481 1 + C T UCEC 34514478 + 34514458 34514498 41 GTGTCCTGGAACCCATACCACACCAAGGTCTTCATGTCCTG GTGTCCTGGAACCCATACCACACTAAGGTCTTCATGTCCTG < 41bp 0.734272440401411 0.511759050332498 0.03411627 0.056717843 prediction 0.445026780137826 Functional Loss - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34514478 chr9:34514481 synonymous SNV . 0 24 hm5C_associated_SNPs_80104 0 0 0 0 2 DNAI1 chr9:34514540 5'GT 34514540 Upstream 60bp
chr8 70533467 70533467 1 + G A SARC 70533464 + 70533444 70533484 41 AGAAAGAGTCAACGGCAATTCTTGAGAAACCAGGGGACTCC AGAAAGAGTCAACGGCAATTCTTAAGAAACCAGGGGACTCC < 41bp 0.722505130098175 0.497887989122629 0.26459342 0.23367077 prediction 0.445010260196349 Functional Loss - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70533464 chr8:70533467 synonymous SNV . 0 24 hm5C_associated_SNPs_80107 0 0 0 0 1 SULF1 chr8:70533486 5'GT 70533486 Upstream 20bp
chr11 64972327 64972327 1 + G C BLCA 64972326 + 64972306 64972346 41 ACTATTGGCTTCGCGGTCTACGAGGTCAGGAGGGTGGATCA ACTATTGGCTTCGCGGTCTACCAGGTCAGGAGGGTGGATCA < 41bp 0.875483270225969 0.652979869485329 0.9007436 0.8895755 prediction 0.44500680148128 Functional Loss - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64972326 chr11:64972327 nonsynonymous SNV 0.284 1 22 hm5C_associated_SNPs_80108 0 0 1 0 1 CAPN1 chr11:64972329 5'GT 64972329 Upstream 3bp
chr17 7490569 7490569 1 + C T UCEC 7490567 + 7490547 7490587 41 GCTGTTTGGGGGCTCCCTGGCCCGAATCTTCACTTCCATTC GCTGTTTGGGGGCTCCCTGGCCTGAATCTTCACTTCCATTC < 41bp 0.841862233007465 0.61936211688419 0.08584246 0.06979442 prediction 0.44500023224655 Functional Loss - MPDU1 ENSG00000129255 CDS Human protein_coding chr17:7490567 chr17:7490569 stopgain 0.998 3 23 hm5C_associated_SNPs_80109 0 0 1 0 2 MPDU1 chr17:7490479 3'AG 7490479 Downstream 91bp
chr17 7490569 7490569 1 + C T UCEC 7490567 + 7490547 7490587 41 GCTGTTTGGGGGCTCCCTGGCCCGAATCTTCACTTCCATTC GCTGTTTGGGGGCTCCCTGGCCTGAATCTTCACTTCCATTC < 41bp 0.841862233007465 0.61936211688419 0.08584246 0.06979442 prediction 0.44500023224655 Functional Loss - MPDU1 ENSG00000129255 CDS Human protein_coding chr17:7490567 chr17:7490569 stopgain 0.998 3 23 hm5C_associated_SNPs_80109 0 0 1 0 2 MPDU1 chr17:7490589 5'GT 7490589 Upstream 21bp
chr7 99817585 99817585 1 + G T rs7786505 99817582 + 99817562 99817602 41 TGCAGCCCCCAGAACCTGGACTGGAGGGGGCCATGGGGCAC TGCAGCCCCCAGAACCTGGACTGTAGGGGGCCATGGGGCAC < 41bp 0.925287623348343 0.702789260183772 0.5788253 0.4527163 prediction 0.444996726329142 Functional Loss - PVRIG ENSG00000213413 CDS Human protein_coding chr7:99817582 chr7:99817585 stopgain 0.037 0 24 hm5C_associated_SNPs_80112 0 0 0 0 1 PVRIG chr7:99817651 5'GT 99817651 Upstream 67bp
chr2 48848387 48848387 1 + C T BLCA 48848384 + 48848364 48848404 41 TCCAATCACCTCTGTTTACTCTTCAGTTGCCGCACAGCTTG TCCAATCACCTCTGTTTACTCTTTAGTTGCCGCACAGCTTG < 41bp 0.737436113577368 0.514939779265297 0.18664408 0.06286341 prediction 0.444992668624141 Functional Loss - GTF2A1L;STON1-GTF2A1L ENSG00000068781;ENSG00000242441 CDS Human other chr2:48848384 chr2:48848387 stopgain 0.941 1 24 hm5C_associated_SNPs_80114 0 0 0 0 2 GTF2A1L;STON1-GTF2A1L chr2:48848306 3'AG 48848306 Downstream 82bp
chr2 48848387 48848387 1 + C T BLCA 48848384 + 48848364 48848404 41 TCCAATCACCTCTGTTTACTCTTCAGTTGCCGCACAGCTTG TCCAATCACCTCTGTTTACTCTTTAGTTGCCGCACAGCTTG < 41bp 0.737436113577368 0.514939779265297 0.18664408 0.06286341 prediction 0.444992668624141 Functional Loss - GTF2A1L;STON1-GTF2A1L ENSG00000068781;ENSG00000242441 CDS Human other chr2:48848384 chr2:48848387 stopgain 0.941 1 24 hm5C_associated_SNPs_80114 0 0 0 0 2 GTF2A1L;STON1-GTF2A1L chr2:48848429 5'GT 48848429 Upstream 43bp
chr7 142566279 142566279 1 + C T LUSC 142566276 + 142566256 142566296 41 GAGAAGTGCGCCAGGGCCGCCTGCAGCCACGGGGACGGAGG GAGAAGTGCGCCAGGGCCGCCTGTAGCCACGGGGACGGAGG < 41bp 0.722488874850418 0.494161598498486 0.38077936 0.25708812 prediction 0.444977749700835 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142566276 chr7:142566279 stopgain 0.610 1 24 hm5C_associated_SNPs_80117 0 0 0 0 1 EPHB6 chr7:142566247 3'AG 142566247 Downstream 33bp
chr10 70998835 70998835 1 + G A DLBC 70998832 + 70998812 70998852 41 GTGGACAAAAAAGTTTAAGGCACGAGGAGTTCAGGACACGG GTGGACAAAAAAGTTTAAGGCACAAGGAGTTCAGGACACGG < 41bp 0.768346877511845 0.545859053439307 0.1118401 0.06288022 prediction 0.444975648145076 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:70998832 chr10:70998835 nonsynonymous SNV 0.616 3 24 hm5C_associated_SNPs_80118 0 0 0 0 1 HKDC1 chr10:70998893 5'GT 70998893 Upstream 59bp
chr6 117869143 117869143 1 + G A UCEC 117869140 + 117869120 117869160 41 TCCACCTTCCGGCCCATGGACACGGATGCCGAGGAGGCAGG TCCACCTTCCGGCCCATGGACACAGATGCCGAGGAGGCAGG < 41bp 0.783746162781721 0.561258365716886 0.7253827 0.6016177 prediction 0.444975594129669 Functional Loss - DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117869140 chr6:117869143 synonymous SNV . 0 24 hm5C_associated_SNPs_80119 0 0 1 0 1 DCBLD1 chr6:117869070 3'AG 117869070 Downstream 74bp
chr7 75615510 75615510 1 + G A UCEC 75615507 + 75615487 75615527 41 AGCACCTGCTAAAGCAAGACCGAGAGCACCTGTGGAAGTTG AGCACCTGCTAAAGCAAGACCGAAAGCACCTGTGGAAGTTG < 41bp 0.794803249014192 0.572317580143348 0.83474827 0.38894823 prediction 0.444971337741687 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75615507 chr7:75615510 nonsynonymous SNV 0.962 1 24 hm5C_associated_SNPs_80121 0 0 1 0 2 POR chr7:75615477 3'AG 75615477 Downstream 34bp
chr7 75615510 75615510 1 + G A UCEC 75615507 + 75615487 75615527 41 AGCACCTGCTAAAGCAAGACCGAGAGCACCTGTGGAAGTTG AGCACCTGCTAAAGCAAGACCGAAAGCACCTGTGGAAGTTG < 41bp 0.794803249014192 0.572317580143348 0.83474827 0.38894823 prediction 0.444971337741687 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75615507 chr7:75615510 nonsynonymous SNV 0.962 1 24 hm5C_associated_SNPs_80121 0 0 1 0 2 POR chr7:75615559 5'GT 75615559 Upstream 50bp
chr12 7293877 7293877 1 + G A LGG 7293874 + 7293854 7293894 41 GGCACCACTACGCTCTGAACCTCGAGTTCCCCACAGTCACA GGCACCACTACGCTCTGAACCTCAAGTTCCCCACAGTCACA < 41bp 0.802140622920762 0.579655355524899 0.1628688 0.09366104 prediction 0.444970534791727 Functional Loss - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7293874 chr12:7293877 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_80122 0 0 0 0 1 CLSTN3 chr12:7293838 3'AG 7293838 Downstream 40bp
chr16 1825723 1825723 1 + T C ACC 1825722 + 1825702 1825742 41 CTGAAGGGGGGCAGGATCACCTCAAGGTAGTGGTGCCTCCC CTGAAGGGGGGCAGGATCACCCCAAGGTAGTGGTGCCTCCC < 41bp 0.758327421278653 0.535846943579791 0.49948004 0.3347366 prediction 0.444960955397723 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825722 chr16:1825723 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_80125 0 0 0 0 1 EME2 chr16:1825727 5'GT 1825727 Upstream 5bp
chr22 51223638 51223638 1 + C T rs138253809 51223636 + 51223616 51223656 41 ATTTGCATCTTTACGTCCTGCGCGGAGGCTGCTACACACAT ATTTGCATCTTTACGTCCTGCGTGGAGGCTGCTACACACAT < 41bp 0.722479009694376 0.473682416892903 0.19604349 0.29832476 prediction 0.444958019388752 Functional Loss - RPL23AP82 ENSG00000184319 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:51223636 chr22:51223638 . . 0 23 hm5C_associated_SNPs_80126 0 0 0 0 2 RPL23AP82 chr22:51223601 3'AG 51223601 Downstream 38bp
chr22 51223638 51223638 1 + C T rs138253809 51223636 + 51223616 51223656 41 ATTTGCATCTTTACGTCCTGCGCGGAGGCTGCTACACACAT ATTTGCATCTTTACGTCCTGCGTGGAGGCTGCTACACACAT < 41bp 0.722479009694376 0.473682416892903 0.19604349 0.29832476 prediction 0.444958019388752 Functional Loss - RPL23AP82 ENSG00000184319 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:51223636 chr22:51223638 . . 0 23 hm5C_associated_SNPs_80126 0 0 0 0 2 RPL23AP82 chr22:51223721 5'GT 51223721 Upstream 84bp
chr22 51223639 51223639 1 + G A UCEC 51223636 + 51223616 51223656 41 ATTTGCATCTTTACGTCCTGCGCGGAGGCTGCTACACACAT ATTTGCATCTTTACGTCCTGCGCAGAGGCTGCTACACACAT < 41bp 0.722479009694376 0.489434089271582 0.19604349 0.06990373 prediction 0.444958019388752 Functional Loss - RPL23AP82 ENSG00000184319 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:51223636 chr22:51223639 . . 0 24 hm5C_associated_SNPs_80127 0 0 0 0 2 RPL23AP82 chr22:51223601 3'AG 51223601 Downstream 39bp
chr22 51223639 51223639 1 + G A UCEC 51223636 + 51223616 51223656 41 ATTTGCATCTTTACGTCCTGCGCGGAGGCTGCTACACACAT ATTTGCATCTTTACGTCCTGCGCAGAGGCTGCTACACACAT < 41bp 0.722479009694376 0.489434089271582 0.19604349 0.06990373 prediction 0.444958019388752 Functional Loss - RPL23AP82 ENSG00000184319 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:51223636 chr22:51223639 . . 0 24 hm5C_associated_SNPs_80127 0 0 0 0 2 RPL23AP82 chr22:51223721 5'GT 51223721 Upstream 83bp
chr1 22140964 22140964 1 + C T rs571894864 22140962 + 22140942 22140982 41 TGCGCTCGCACGCCGCATCGCGCAGGTTCTACTTCGTGGCT TGCGCTCGCACGCCGCATCGCGTAGGTTCTACTTCGTGGCT < 41bp 0.722476862287718 0.472367497513603 0.5168101 0.7101569 prediction 0.444953724575436 Functional Loss - LDLRAD2 ENSG00000187942 CDS Human protein_coding chr1:22140962 chr1:22140964 synonymous SNV . 0 23 hm5C_associated_SNPs_80128 0 0 0 0 1 LDLRAD2 chr1:22140891 3'AG 22140891 Downstream 74bp
chr17 73818666 73818666 1 + G A rs373016008 73818663 + 73818643 73818683 41 GCCAGGGGCTGCCGAGCTGGCCCGACTTCGGCAAGAGCTGG GCCAGGGGCTGCCGAGCTGGCCCAACTTCGGCAAGAGCTGG < 41bp 0.780692357278874 0.558217083898478 0.02919203 0.027581096 prediction 0.444950546760791 Functional Loss - UNK ENSG00000132478 CDS Human protein_coding chr17:73818663 chr17:73818666 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_80129 0 0 1 0 1 UNK chr17:73818739 5'GT 73818739 Upstream 74bp
chr1 78407733 78407733 1 + C T UCEC 78407730 + 78407710 78407750 41 AGATGATGTTGATGTTAGGCCTGCAAGAAAAAGCGAGGCTC AGATGATGTTGATGTTAGGCCTGTAAGAAAAAGCGAGGCTC < 41bp 0.751960425874841 0.529490403878842 0.14044756 0.13652298 prediction 0.444940043991999 Functional Loss - NEXN ENSG00000162614 CDS Human protein_coding chr1:78407730 chr1:78407733 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_80132 0 0 0 0 1 NEXN chr1:78407708 3'AG 78407708 Downstream 26bp
chr8 92378836 92378836 1 + C T LUAD 92378834 + 92378814 92378854 41 CTGCAGCAGGTGAAAATTATCTCAATAAACAACCCGCTTGT CTGCAGCAGGTGAAAATTATCTTAATAAACAACCCGCTTGT < 41bp 0.722466824498378 0.42332131631691 0.38992333 0.13242665 prediction 0.444933648996756 Functional Loss - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92378834 chr8:92378836 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_80133 0 0 0 1 1 SLC26A7 chr8:92378808 3'AG 92378808 Downstream 29bp
chr17 41598890 41598890 1 + C T UCEC 41598887 + 41598867 41598907 41 TTATCCAGGCTCGTTCCCTGCGCCGGGCCCAGGACATTCGC TTATCCAGGCTCGTTCCCTGCGCTGGGCCCAGGACATTCGC < 41bp 0.726257184977353 0.50379589434999 0.253594 0.17896625 prediction 0.444922581254726 Functional Loss - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41598887 chr17:41598890 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_80137 0 0 0 0 1 DHX8 chr17:41598933 5'GT 41598933 Upstream 44bp
chr7 48089509 48089509 1 + G T LAML 48089507 + 48089487 48089527 41 CGGCCATTGACTCAAAGTATCTGAGCAAAGCAGGCACCCCA CGGCCATTGACTCAAAGTATCTTAGCAAAGCAGGCACCCCA < 41bp 0.722461284620458 0.357977408213148 0.3776622 0.20124394 prediction 0.444922569240916 Functional Loss - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48089507 chr7:48089509 synonymous SNV . 0 23 hm5C_associated_SNPs_80138 0 0 0 0 2 C7orf57 chr7:48089477 3'AG 48089477 Downstream 33bp
chr7 48089509 48089509 1 + G T LAML 48089507 + 48089487 48089527 41 CGGCCATTGACTCAAAGTATCTGAGCAAAGCAGGCACCCCA CGGCCATTGACTCAAAGTATCTTAGCAAAGCAGGCACCCCA < 41bp 0.722461284620458 0.357977408213148 0.3776622 0.20124394 prediction 0.444922569240916 Functional Loss - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48089507 chr7:48089509 synonymous SNV . 0 23 hm5C_associated_SNPs_80138 0 0 0 0 2 C7orf57 chr7:48089574 5'GT 48089574 Upstream 66bp
chr8 35425731 35425731 1 + G A SKCM 35425728 + 35425708 35425748 41 TGGAGCCACCTGGGTACCTCCAAGAGCAGGAAGGCCTCTGT TGGAGCCACCTGGGTACCTCCAAAAGCAGGAAGGCCTCTGT < 41bp 0.735222867753815 0.512769681702535 0.86314356 0.58811057 prediction 0.444906372102562 Functional Loss - UNC5D ENSG00000156687 CDS Human protein_coding chr8:35425728 chr8:35425731 synonymous SNV . 0 24 hm5C_associated_SNPs_80140 0 0 0 0 1 UNC5D chr8:35425759 5'GT 35425759 Upstream 29bp
chr19 17598037 17598037 1 + G A COAD 17598034 + 17598014 17598054 41 AAGTTTGATCAAGTTCTGCTCTGGAGACTTGGGGCCCGAGG AAGTTTGATCAAGTTCTGCTCTGAAGACTTGGGGCCCGAGG < 41bp 0.78051550135333 0.558067407344037 0.31845734 0.034589797 prediction 0.444896188018585 Functional Loss - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17598034 chr19:17598037 nonsynonymous SNV 0.063 3 24 hm5C_associated_SNPs_80143 0 0 1 0 1 SLC27A1 chr19:17597983 3'AG 17597983 Downstream 55bp
chr1 156628431 156628431 1 + G C SKCM 156628430 + 156628410 156628450 41 CTGTGCTTCGCTACCGGTGCCGGGAAGGACTGGCCCAGCGC CTGTGCTTCGCTACCGGTGCCCGGAAGGACTGGCCCAGCGC < 41bp 0.892265820384076 0.669817847589084 0.8972134 0.70133847 prediction 0.444895945589984 Functional Loss - BCAN ENSG00000132692 CDS Human protein_coding chr1:156628430 chr1:156628431 nonsynonymous SNV 0.970 0 22 hm5C_associated_SNPs_80144 0 0 0 0 1 BCAN chr1:156628525 5'GT 156628525 Upstream 95bp
chr16 30035098 30035098 1 + C T LUAD 30035096 + 30035076 30035116 41 AGCCCTGGGGACAGAGTCTCCGCGCTTCTTAGACAGACCTG AGCCCTGGGGACAGAGTCTCCGTGCTTCTTAGACAGACCTG < 41bp 0.812435081236598 0.589987376593379 0.6869982 0.44075155 prediction 0.444895409286437 Functional Loss - C16orf92 ENSG00000167194 CDS Human protein_coding chr16:30035096 chr16:30035098 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_80146 0 0 0 0 1 C16orf92 chr16:30035048 3'AG 30035048 Downstream 51bp
chr19 58805539 58805539 1 + C T STAD 58805537 + 58805517 58805557 41 GAAGAGGAGCCATCCCATGTCACGGGAAGGGAAGGATTCCC GAAGAGGAGCCATCCCATGTCATGGGAAGGGAAGGATTCCC < 41bp 0.791549138106821 0.569104323081274 0.4864071 0.66739976 prediction 0.444889630051093 Functional Loss - ZNF8 ENSG00000083842;ENSG00000273439 CDS Human other chr19:58805537 chr19:58805539 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_80148 0 0 0 0 1 ZNF8 chr19:58805464 3'AG 58805464 Downstream 76bp
chr19 5110659 5110659 1 + G A STAD 5110656 + 5110636 5110676 41 ACGTGCCGGAAGGACATGGTCAAGATCTCCATGGACGTGTT ACGTGCCGGAAGGACATGGTCAAAATCTCCATGGACGTGTT < 41bp 0.781718554380909 0.559278190396238 0.072915524 0.049793363 prediction 0.444880727969342 Functional Loss - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5110656 chr19:5110659 synonymous SNV . 0 24 hm5C_associated_SNPs_80149 0 0 1 0 1 KDM4B chr19:5110633 3'AG 5110633 Downstream 27bp
chr11 64854896 64854896 1 + G A UCEC 64854893 + 64854873 64854913 41 GCCGGCCTTGGGTTGGCTGGCCCGGCTGCTAAGGTACACAG GCCGGCCTTGGGTTGGCTGGCCCAGCTGCTAAGGTACACAG < 41bp 0.722434693494182 0.483995413581988 0.3997561 0.45513165 prediction 0.444869386988364 Functional Loss - ZFPL1 ENSG00000162300 CDS Human protein_coding chr11:64854893 chr11:64854896 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_80153 0 0 1 0 1 ZFPL1 chr11:64854905 5'GT 64854905 Upstream 10bp
chrX 84342677 84342677 1 + G T UCEC 84342674 + 84342654 84342694 41 AGATATAGATATGTACAGCACTAGAAGCTGAAGTAGACTGC AGATATAGATATGTACAGCACTATAAGCTGAAGTAGACTGC < 41bp 0.722434242807634 0.350027850650303 0.052871138 0.07114032 prediction 0.444868485615268 Functional Loss - APOOL ENSG00000155008 CDS Human protein_coding chrX:84342674 chrX:84342677 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_80154 0 0 1 0 1 APOOL chrX:84342596 3'AG 84342596 Downstream 82bp
chr3 170141062 170141062 1 + G T LUAD 170141060 + 170141040 170141080 41 ATCCGGATGGGCCAGGAGCCCGGTGTGGCTAAGTACAGGCG ATCCGGATGGGCCAGGAGCCCGTTGTGGCTAAGTACAGGCG < 41bp 0.722433004524038 0.374480799559607 0.41255572 0.099405885 prediction 0.444866009048077 Functional Loss - CLDN11 ENSG00000013297 CDS Human protein_coding chr3:170141060 chr3:170141062 nonsynonymous SNV 0.933 4 23 hm5C_associated_SNPs_80156 0 0 1 0 1 CLDN11 chr3:170141115 5'GT 170141115 Upstream 54bp
chr1 79107250 79107250 1 + G C LUAD 79107246 + 79107226 79107266 41 TCTCTGCACTGAGGCAGATGCTGCGGGCTGCAGATGATTTT TCTCTGCACTGAGGCAGATGCTGCCGGCTGCAGATGATTTT < 41bp 0.72242899605362 0.435521231975073 0.35039836 0.16863379 prediction 0.44485799210724 Functional Loss - IFI44L ENSG00000137959 CDS Human protein_coding chr1:79107246 chr1:79107250 nonsynonymous SNV 0.003 2 25 hm5C_associated_SNPs_80157 0 0 0 0 1 IFI44L chr1:79107294 5'GT 79107294 Upstream 45bp
chr12 100926245 100926245 1 + G T LUSC 100926243 + 100926223 100926263 41 GTTTCTCCCACAGGTTTCTTCAGGAGAAGCATTACCAAAAA GTTTCTCCCACAGGTTTCTTCATGAGAAGCATTACCAAAAA < 41bp 0.899543812195077 0.677120471940547 0.5650809 0.106075495 prediction 0.444846680509062 Functional Loss - NR1H4 ENSG00000012504 CDS Human protein_coding chr12:100926243 chr12:100926245 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_80159 0 0 0 1 1 NR1H4 chr12:100926236 3'AG 100926236 Downstream 10bp
chr19 50385544 50385544 1 + C T READ 50385542 + 50385522 50385562 41 CACCACCTTCAGCAGCTTCTCCCGAGTGACCAACTTCTTCC CACCACCTTCAGCAGCTTCTCCTGAGTGACCAACTTCTTCC < 41bp 0.843604309651893 0.621182103418417 0.51112133 0.32858115 prediction 0.444844412466951 Functional Loss - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385542 chr19:50385544 stopgain 0.998 0 23 hm5C_associated_SNPs_80161 0 0 1 0 1 TBC1D17 chr19:50385499 3'AG 50385499 Downstream 46bp
chr2 219677331 219677331 1 + G A rs149897566 219677328 + 219677308 219677348 41 GCTGCCTGCAGCGATCCATCCCCGAGGACACCGTGACCTTC GCTGCCTGCAGCGATCCATCCCCAAGGACACCGTGACCTTC < 41bp 0.72241876750652 0.472487368198075 0.29052123 0.025166571 prediction 0.444837535013039 Functional Loss - CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219677328 chr2:219677331 nonsynonymous SNV 0.060 0 24 hm5C_associated_SNPs_80162 1 0 1 0 1 CYP27A1 chr2:219677275 3'AG 219677275 Downstream 57bp
chr2 219677330 219677330 1 + C T UCEC 219677328 + 219677308 219677348 41 GCTGCCTGCAGCGATCCATCCCCGAGGACACCGTGACCTTC GCTGCCTGCAGCGATCCATCCCTGAGGACACCGTGACCTTC < 41bp 0.72241876750652 0.429101784974377 0.29052123 0.08686197 prediction 0.444837535013039 Functional Loss - CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219677328 chr2:219677330 synonymous SNV . 0 23 hm5C_associated_SNPs_80163 0 0 1 0 1 CYP27A1 chr2:219677275 3'AG 219677275 Downstream 56bp
chr20 4680118 4680118 1 + T C rs62637686 4680117 + 4680097 4680137 41 TGGTGGTGGCTGGGGACAGCCTCATGGTGGTGGCTGGGGTC TGGTGGTGGCTGGGGACAGCCCCATGGTGGTGGCTGGGGTC < 41bp 0.79319474166159 0.570777901787323 0.23661217 0.28352076 prediction 0.444833679748534 Functional Loss - PRNP ENSG00000171867 CDS Human protein_coding chr20:4680117 chr20:4680118 synonymous SNV . 0 22 hm5C_associated_SNPs_80164 1 0 1 0 1 PRNP chr20:4680125 5'GT 4680125 Upstream 8bp
chr11 6292693 6292693 1 + G A LUSC 6292690 + 6292670 6292710 41 GAGCTCGCCCCAGGGCTCTTCCCGATGAGGACCCTCCCACT GAGCTCGCCCCAGGGCTCTTCCCAATGAGGACCCTCCCACT < 41bp 0.805661648584922 0.583245351608244 0.8967844 0.6248075 prediction 0.444832593953356 Functional Loss - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6292690 chr11:6292693 nonsynonymous SNV 0.958 0 24 hm5C_associated_SNPs_80165 0 0 0 0 1 CCKBR chr11:6292627 3'AG 6292627 Downstream 67bp
chr5 132403232 132403232 1 + G T UCEC 132403230 + 132403210 132403250 41 TGATATTGTGCAGTTGCCTACAGGATTAACAGGTATAAAGG TGATATTGTGCAGTTGCCTACATGATTAACAGGTATAAAGG < 41bp 0.722412393487401 0.386840938211582 0.8319834 0.092838794 prediction 0.444824786974803 Functional Loss - HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132403230 chr5:132403232 stopgain 0.981 1 23 hm5C_associated_SNPs_80168 0 0 1 0 1 HSPA4 chr5:132403249 5'GT 132403249 Upstream 18bp
chr19 14574899 14574899 1 + C T UCEC 14574897 + 14574877 14574917 41 TATCGGTGGAGAAGCTGAACCTCGGCACTGACTCGGACAGC TATCGGTGGAGAAGCTGAACCTTGGCACTGACTCGGACAGC < 41bp 0.722411393124664 0.4460779964686 0.34620553 0.25585663 prediction 0.444822786249329 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574897 chr19:14574899 synonymous SNV . 0 23 hm5C_associated_SNPs_80170 0 0 1 0 2 PKN1 chr19:14574872 3'AG 14574872 Downstream 28bp
chr19 14574899 14574899 1 + C T UCEC 14574897 + 14574877 14574917 41 TATCGGTGGAGAAGCTGAACCTCGGCACTGACTCGGACAGC TATCGGTGGAGAAGCTGAACCTTGGCACTGACTCGGACAGC < 41bp 0.722411393124664 0.4460779964686 0.34620553 0.25585663 prediction 0.444822786249329 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574897 chr19:14574899 synonymous SNV . 0 23 hm5C_associated_SNPs_80170 0 0 1 0 2 PKN1 chr19:14574965 5'GT 14574965 Upstream 67bp
chr17 61554686 61554686 1 + G A rs184457276 61554683 + 61554663 61554703 41 GCGCACGACACCAACATCACCGCGGAGAATGCAAGGCGCCA GCGCACGACACCAACATCACCGCAGAGAATGCAAGGCGCCA < 41bp 0.722409674026667 0.496460546926638 0.36825752 0.3600614 prediction 0.444819348053335 Functional Loss - ACE ENSG00000159640 CDS Human protein_coding chr17:61554683 chr17:61554686 synonymous SNV . 0 24 hm5C_associated_SNPs_80171 0 0 0 0 1 ACE chr17:61554704 5'GT 61554704 Upstream 19bp
chr11 1905772 1905772 1 + G A SKCM 1905769 + 1905749 1905789 41 CAGCCAGACTTGCCCATCTCCAAGATTGATCAGTGGCTGGA CAGCCAGACTTGCCCATCTCCAAAATTGATCAGTGGCTGGA < 41bp 0.777500517348833 0.555091052195362 0.19850692 0.22252753 prediction 0.444818930306941 Functional Loss - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1905769 chr11:1905772 synonymous SNV . 0 24 hm5C_associated_SNPs_80172 0 0 0 0 2 LSP1 chr11:1905730 3'AG 1905730 Downstream 43bp
chr11 1905772 1905772 1 + G A SKCM 1905769 + 1905749 1905789 41 CAGCCAGACTTGCCCATCTCCAAGATTGATCAGTGGCTGGA CAGCCAGACTTGCCCATCTCCAAAATTGATCAGTGGCTGGA < 41bp 0.777500517348833 0.555091052195362 0.19850692 0.22252753 prediction 0.444818930306941 Functional Loss - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1905769 chr11:1905772 synonymous SNV . 0 24 hm5C_associated_SNPs_80172 0 0 0 0 2 LSP1 chr11:1905811 5'GT 1905811 Upstream 40bp
chr19 13189451 13189451 1 + G A SKCM 13189448 + 13189428 13189468 41 CCCGGCTTCTCTAAAGAAGTCAGGAAAGCTGGACTTCTGCA CCCGGCTTCTCTAAAGAAGTCAGAAAAGCTGGACTTCTGCA < 41bp 0.773006035691266 0.55059847815771 0.8124162 0.4928416 prediction 0.444815115067112 Functional Loss - NFIX ENSG00000008441 CDS Human protein_coding chr19:13189448 chr19:13189451 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_80174 0 0 0 0 2 NFIX chr19:13189427 3'AG 13189427 Downstream 25bp
chr19 13189451 13189451 1 + G A SKCM 13189448 + 13189428 13189468 41 CCCGGCTTCTCTAAAGAAGTCAGGAAAGCTGGACTTCTGCA CCCGGCTTCTCTAAAGAAGTCAGAAAAGCTGGACTTCTGCA < 41bp 0.773006035691266 0.55059847815771 0.8124162 0.4928416 prediction 0.444815115067112 Functional Loss - NFIX ENSG00000008441 CDS Human protein_coding chr19:13189448 chr19:13189451 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_80174 0 0 0 0 2 NFIX chr19:13189549 5'GT 13189549 Upstream 99bp
chr8 104225186 104225186 1 + G A COAD 104225183 + 104225163 104225203 41 ACTGCCCTCCAATGGTGTGCCCCGATCTACAGCCCCAGGTG ACTGCCCTCCAATGGTGTGCCCCAATCTACAGCCCCAGGTG < 41bp 0.803124622741067 0.580725091595141 0.111594915 0.15309626 prediction 0.444799062291852 Functional Loss - BAALC ENSG00000164929 CDS Human protein_coding chr8:104225183 chr8:104225186 nonsynonymous SNV 0.956 1 24 hm5C_associated_SNPs_80178 0 0 0 0 1 BAALC chr8:104225147 3'AG 104225147 Downstream 40bp
chr6 109764212 109764212 1 + G A UCEC 109764209 + 109764189 109764229 41 GAAGGCAACACAATGGTACCCAAGAACTGCTACGTCAGCCA GAAGGCAACACAATGGTACCCAAAAACTGCTACGTCAGCCA < 41bp 0.787733126946429 0.56533558287392 0.8828747 0.898973 prediction 0.44479508814502 Functional Loss - SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109764209 chr6:109764212 synonymous SNV . 0 24 hm5C_associated_SNPs_80179 0 0 1 0 2 SMPD2 chr6:109764180 3'AG 109764180 Downstream 33bp
chr6 109764212 109764212 1 + G A UCEC 109764209 + 109764189 109764229 41 GAAGGCAACACAATGGTACCCAAGAACTGCTACGTCAGCCA GAAGGCAACACAATGGTACCCAAAAACTGCTACGTCAGCCA < 41bp 0.787733126946429 0.56533558287392 0.8828747 0.898973 prediction 0.44479508814502 Functional Loss - SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109764209 chr6:109764212 synonymous SNV . 0 24 hm5C_associated_SNPs_80179 0 0 1 0 2 SMPD2 chr6:109764284 5'GT 109764284 Upstream 73bp
chr11 17633766 17633766 1 + G A CESC 17633763 + 17633743 17633783 41 GCCTGGAGGGCCAGCTGATTCGCGTGAATCAGTCCCAGCAC GCCTGGAGGGCCAGCTGATTCGCATGAATCAGTCCCAGCAC < 41bp 0.767070818684687 0.544676517280456 0.63531095 0.29642075 prediction 0.444788602808463 Functional Loss - OTOG ENSG00000188162 CDS Human protein_coding chr11:17633763 chr11:17633766 nonsynonymous SNV 0.845 3 24 hm5C_associated_SNPs_80180 0 0 0 0 1 OTOG chr11:17633709 3'AG 17633709 Downstream 58bp
chr4 186272742 186272742 1 + C T rs138136210 186272740 + 186272720 186272760 41 CATTTTTGGAAAGACTTCCTCGCGACTTCTTCTCCCACCAG CATTTTTGGAAAGACTTCCTCGTGACTTCTTCTCCCACCAG < 41bp 0.846689888352327 0.624300188667325 0.50034165 0.724993 prediction 0.444779399370005 Functional Loss - SNX25 ENSG00000109762 CDS Human protein_coding chr4:186272740 chr4:186272742 synonymous SNV . 0 23 hm5C_associated_SNPs_80183 0 0 0 0 1 SNX25 chr4:186272763 5'GT 186272763 Upstream 22bp
chr2 173460625 173460625 1 + C T OV 173460622 + 173460602 173460642 41 GCTGCCTGGAAGCATTACAACACCAACCACGAGGCTGATGA GCTGCCTGGAAGCATTACAACACTAACCACGAGGCTGATGA < 41bp 0.737223276557138 0.514837171335245 0.019809663 0.04905832 prediction 0.444772210443787 Functional Loss - PDK1 ENSG00000152256 CDS Human protein_coding chr2:173460622 chr2:173460625 synonymous SNV . 0 24 hm5C_associated_SNPs_80184 0 0 1 1 1 PDK1 chr2:173460557 3'AG 173460557 Downstream 69bp
chr19 38795267 38795267 1 + G A SKCM 38795264 + 38795244 38795284 41 ACTGCCGCACCTCCATCCAGCAAGGACACCACAGCTCTTCC ACTGCCGCACCTCCATCCAGCAAAGACACCACAGCTCTTCC < 41bp 0.789091175351353 0.566705156897121 0.6774342 0.27157637 prediction 0.444772036908464 Functional Loss - C19orf33 ENSG00000167644;ENSG00000267748 CDS Human other chr19:38795264 chr19:38795267 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_80185 0 0 0 0 3 C19orf33 chr19:38795205 3'AG 38795205 Downstream 63bp
chr19 38795267 38795267 1 + G A SKCM 38795264 + 38795244 38795284 41 ACTGCCGCACCTCCATCCAGCAAGGACACCACAGCTCTTCC ACTGCCGCACCTCCATCCAGCAAAGACACCACAGCTCTTCC < 41bp 0.789091175351353 0.566705156897121 0.6774342 0.27157637 prediction 0.444772036908464 Functional Loss - C19orf33 ENSG00000167644;ENSG00000267748 CDS Human other chr19:38795264 chr19:38795267 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_80185 0 0 0 0 3 C19orf33 chr19:38795264 3'AG 38795264 Downstream 4bp
chr19 38795267 38795267 1 + G A SKCM 38795264 + 38795244 38795284 41 ACTGCCGCACCTCCATCCAGCAAGGACACCACAGCTCTTCC ACTGCCGCACCTCCATCCAGCAAAGACACCACAGCTCTTCC < 41bp 0.789091175351353 0.566705156897121 0.6774342 0.27157637 prediction 0.444772036908464 Functional Loss - C19orf33 ENSG00000167644;ENSG00000267748 CDS Human other chr19:38795264 chr19:38795267 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_80185 0 0 0 0 3 C19orf33 chr19:38795326 5'GT 38795326 Upstream 60bp
chr3 58116576 58116576 1 + C T CESC 58116574 + 58116554 58116594 41 GCCCGTGTCCTGCAGTCCTTCACGGTGGACAGCAGCAAGGC GCCCGTGTCCTGCAGTCCTTCATGGTGGACAGCAGCAAGGC < 41bp 0.810376478820504 0.587991599060816 0.6691265 0.30064344 prediction 0.444769759519377 Functional Loss - FLNB ENSG00000136068 CDS Human protein_coding chr3:58116574 chr3:58116576 nonsynonymous SNV 0.492 5 23 hm5C_associated_SNPs_80187 0 0 1 0 1 FLNB chr3:58116635 5'GT 58116635 Upstream 60bp
chr15 25425543 25425543 1 + A C ESCA 25425539 + 25425519 25425559 41 TGTGCTCAACACCTGGTGAGCTGAAGCTCAGGCCCTTCCTG TGTGCTCAACACCTGGTGAGCTGACGCTCAGGCCCTTCCTG < 41bp 0.722381029488556 0.381233663559178 0.37557828 0.311828 prediction 0.444762058977111 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25425539 chr15:25425543 . . 0 25 hm5C_associated_SNPs_80189 0 0 0 0 2 SNHG14 chr15:25425456 3'AG 25425456 Downstream 88bp
chr15 25425543 25425543 1 + A C ESCA 25425539 + 25425519 25425559 41 TGTGCTCAACACCTGGTGAGCTGAAGCTCAGGCCCTTCCTG TGTGCTCAACACCTGGTGAGCTGACGCTCAGGCCCTTCCTG < 41bp 0.722381029488556 0.381233663559178 0.37557828 0.311828 prediction 0.444762058977111 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25425539 chr15:25425543 . . 0 25 hm5C_associated_SNPs_80189 0 0 0 0 2 SNHG14 chr15:25425587 5'GT 25425587 Upstream 45bp
chrX 68749007 68749007 1 + G T UCEC 68749005 + 68748985 68749025 41 GCTCCCTGGCTTTATCTGTACAGGTAAAGGCAGGGCACTGG GCTCCCTGGCTTTATCTGTACATGTAAAGGCAGGGCACTGG < 41bp 0.722380203950262 0.360414550202492 0.17569923 0.07114568 prediction 0.444760407900524 Functional Loss - FAM155B ENSG00000130054 CDS Human protein_coding chrX:68749005 chrX:68749007 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_80190 0 0 0 0 1 FAM155B chrX:68749007 5'GT 68749007 Upstream 1bp
chr2 201450847 201450847 1 + G C BLCA 201450846 + 201450826 201450866 41 ACCACAATGGACCGGGCGTCCGAGCTGCTCTTCTACGTGAA ACCACAATGGACCGGGCGTCCCAGCTGCTCTTCTACGTGAA < 41bp 0.722364167515551 0.418585034976271 0.6427403 0.21056846 prediction 0.444728335031102 Functional Loss - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201450846 chr2:201450847 nonsynonymous SNV 0.179 0 22 hm5C_associated_SNPs_80196 0 0 0 0 1 AOX1 chr2:201450876 5'GT 201450876 Upstream 30bp
chrX 13626535 13626535 1 + G T COAD 13626532 + 13626512 13626552 41 CCTTCAAGTGTAAATGCAAGCAGGGATATAAAGGCAATGGA CCTTCAAGTGTAAATGCAAGCAGTGATATAAAGGCAATGGA < 41bp 0.72236019448234 0.344372695175923 0.8885021 0.32919163 prediction 0.44472038896468 Functional Loss - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13626532 chrX:13626535 stopgain 1.000 1 24 hm5C_associated_SNPs_80199 0 0 0 0 2 EGFL6 chrX:13626443 3'AG 13626443 Downstream 93bp
chrX 13626535 13626535 1 + G T COAD 13626532 + 13626512 13626552 41 CCTTCAAGTGTAAATGCAAGCAGGGATATAAAGGCAATGGA CCTTCAAGTGTAAATGCAAGCAGTGATATAAAGGCAATGGA < 41bp 0.72236019448234 0.344372695175923 0.8885021 0.32919163 prediction 0.44472038896468 Functional Loss - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13626532 chrX:13626535 stopgain 1.000 1 24 hm5C_associated_SNPs_80199 0 0 0 0 2 EGFL6 chrX:13626565 5'GT 13626565 Upstream 31bp
chr16 24902199 24902199 1 + C T LUSC 24902197 + 24902177 24902217 41 CTCTGAATTCTAGGTTTTGCCGCGGTTGGTGGGATGGAAGG CTCTGAATTCTAGGTTTTGCCGTGGTTGGTGGGATGGAAGG < 41bp 0.818306129968687 0.595947675321267 0.80291694 0.47712764 prediction 0.444716909294839 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24902197 chr16:24902199 nonsynonymous SNV 0.011 4 23 hm5C_associated_SNPs_80201 0 0 0 0 1 SLC5A11 chr16:24902190 3'AG 24902190 Downstream 10bp
chr6 37358608 37358608 1 + G A UCEC 37358605 + 37358585 37358625 41 GATGGTCTGGAGGATTCTCTCTAGCCGTGACTCCGCTGCTC GATGGTCTGGAGGATTCTCTCTAACCGTGACTCCGCTGCTC < 41bp 0.796699811795011 0.574342623161528 0.79465055 0.37521318 prediction 0.444714377266965 Functional Loss - RNF8 ENSG00000112130 CDS Human protein_coding chr6:37358605 chr6:37358608 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_80203 0 0 1 0 1 RNF8 chr6:37358518 3'AG 37358518 Downstream 91bp
chr19 16942351 16942351 1 + G A LUSC 16942348 + 16942328 16942368 41 GACGTGTCTCGCAGCTCTTCCACGAGCACCCTGACCTCATT GACGTGTCTCGCAGCTCTTCCACAAGCACCCTGACCTCATT < 41bp 0.722356471439958 0.47935232888636 0.7528882 0.36721736 prediction 0.444712942879916 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16942348 chr19:16942351 nonsynonymous SNV 0.982 3 24 hm5C_associated_SNPs_80204 0 0 1 0 1 SIN3B chr19:16942305 3'AG 16942305 Downstream 47bp
chr21 35747803 35747803 1 + G A rs192071625 35747800 + 35747780 35747820 41 TTTCGGGACCTGTAGTTTTCCCCGGCAGGACGGTAGAAGTC TTTCGGGACCTGTAGTTTTCCCCAGCAGGACGGTAGAAGTC < 41bp 0.78590973747989 0.563555347698943 0.41784236 0.18695703 prediction 0.444708779561893 Functional Loss - SMIM11A;SMIM11B ENSG00000205670 UTR5 Human protein_coding chr21:35747800 chr21:35747803 . . 0 24 hm5C_associated_SNPs_80206 0 0 1 0 1 SMIM11A;SMIM11B chr21:35747866 5'GT 35747866 Upstream 64bp
chr17 4796057 4796057 1 + G A STAD 4796054 + 4796034 4796074 41 CTGGCTCACTGGAGCGGAACCGCGTGGGAGGTATGTGAGCC CTGGCTCACTGGAGCGGAACCGCATGGGAGGTATGTGAGCC < 41bp 0.722346768378305 0.480965836500331 0.50822484 0.41613394 prediction 0.444693536756609 Functional Loss - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4796054 chr17:4796057 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_80214 0 0 0 0 1 MINK1 chr17:4796063 5'GT 4796063 Upstream 7bp
chr17 4796056 4796056 1 + C T STAD 4796054 + 4796034 4796074 41 CTGGCTCACTGGAGCGGAACCGCGTGGGAGGTATGTGAGCC CTGGCTCACTGGAGCGGAACCGTGTGGGAGGTATGTGAGCC < 41bp 0.722346768378305 0.457469693035553 0.50822484 0.4954579 prediction 0.444693536756609 Functional Loss - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4796054 chr17:4796056 synonymous SNV . 0 23 hm5C_associated_SNPs_80215 0 0 0 0 1 MINK1 chr17:4796063 5'GT 4796063 Upstream 8bp
chr19 7976353 7976353 1 + G T UCEC 7976350 + 7976330 7976370 41 GCAACAGGACAGTTTCCCTACAAGAACTGCAAGACGGACTT GCAACAGGACAGTTTCCCTACAATAACTGCAAGACGGACTT < 41bp 0.722342562687345 0.333159612850286 0.22087067 0.070513606 prediction 0.444685125374691 Functional Loss - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7976350 chr19:7976353 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_80219 0 0 1 1 2 MAP2K7 chr19:7976300 3'AG 7976300 Downstream 54bp
chr19 7976353 7976353 1 + G T UCEC 7976350 + 7976330 7976370 41 GCAACAGGACAGTTTCCCTACAAGAACTGCAAGACGGACTT GCAACAGGACAGTTTCCCTACAATAACTGCAAGACGGACTT < 41bp 0.722342562687345 0.333159612850286 0.22087067 0.070513606 prediction 0.444685125374691 Functional Loss - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7976350 chr19:7976353 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_80219 0 0 1 1 2 MAP2K7 chr19:7976321 3'AG 7976321 Downstream 33bp
chr4 39465209 39465209 1 + C T SKCM 39465207 + 39465187 39465227 41 GGAGGTGGAGAATATGCCACCGCCACAGCCACGATCATGGT GGAGGTGGAGAATATGCCACCGTCACAGCCACGATCATGGT < 41bp 0.848719423241558 0.626378792519614 0.3217006 0.06628433 prediction 0.444681261443888 Functional Loss - LIAS ENSG00000121897 CDS Human protein_coding chr4:39465207 chr4:39465209 nonsynonymous SNV 0.815 4 23 hm5C_associated_SNPs_80221 0 0 1 0 2 LIAS chr4:39465145 3'AG 39465145 Downstream 65bp
chr4 39465209 39465209 1 + C T SKCM 39465207 + 39465187 39465227 41 GGAGGTGGAGAATATGCCACCGCCACAGCCACGATCATGGT GGAGGTGGAGAATATGCCACCGTCACAGCCACGATCATGGT < 41bp 0.848719423241558 0.626378792519614 0.3217006 0.06628433 prediction 0.444681261443888 Functional Loss - LIAS ENSG00000121897 CDS Human protein_coding chr4:39465207 chr4:39465209 nonsynonymous SNV 0.815 4 23 hm5C_associated_SNPs_80221 0 0 1 0 2 LIAS chr4:39465225 5'GT 39465225 Upstream 17bp
chr1 156785617 156785617 1 + G A rs1800601 156785614 + 156785594 156785634 41 GTAAGGGAGTGAGTGGGCAACTCGGCGCATGAAGGAGGTAC GTAAGGGAGTGAGTGGGCAACTCAGCGCATGAAGGAGGTAC < 41bp 0.722339676116479 0.493332252010887 0.5997112 0.3416077 prediction 0.444679352232958 Functional Loss - NTRK1 ENSG00000198400 UTR5 Human protein_coding chr1:156785614 chr1:156785617 . . 0 24 hm5C_associated_SNPs_80222 1 1 0 0 1 NTRK1 chr1:156785630 5'GT 156785630 Upstream 14bp
chr11 71850176 71850176 1 + G T LUAD 71850173 + 71850153 71850193 41 TCTCTGAGTGCTCACCCAACCTGGGGCCCTGGATCCGGCAG TCTCTGAGTGCTCACCCAACCTGTGGCCCTGGATCCGGCAG < 41bp 0.931126992730085 0.708794250447737 0.78527796 0.13908109 prediction 0.444665484564695 Functional Loss - FOLR3 ENSG00000110203 CDS Human protein_coding chr11:71850173 chr11:71850176 nonsynonymous SNV 0.952 2 24 hm5C_associated_SNPs_80229 0 0 0 0 1 FOLR3 chr11:71850193 5'GT 71850193 Upstream 18bp
chr14 74960811 74960811 1 + G C rs201157942 74960810 + 74960790 74960830 41 GAGGCGTCGTCCTCCAGCCCCGAGGCCGGCGAAGGGCAGAT GAGGCGTCGTCCTCCAGCCCCCAGGCCGGCGAAGGGCAGAT < 41bp 0.884537283472952 0.662208081496859 0.576721 0.18334183 prediction 0.444658403952185 Functional Loss - ISCA2 ENSG00000119655;ENSG00000165898 CDS Human other chr14:74960810 chr14:74960811 nonsynonymous SNV 0.308 0 22 hm5C_associated_SNPs_80231 1 0 1 0 2 ISCA2 chr14:74960753 3'AG 74960753 Downstream 59bp
chr14 74960811 74960811 1 + G C rs201157942 74960810 + 74960790 74960830 41 GAGGCGTCGTCCTCCAGCCCCGAGGCCGGCGAAGGGCAGAT GAGGCGTCGTCCTCCAGCCCCCAGGCCGGCGAAGGGCAGAT < 41bp 0.884537283472952 0.662208081496859 0.576721 0.18334183 prediction 0.444658403952185 Functional Loss - ISCA2 ENSG00000119655;ENSG00000165898 CDS Human other chr14:74960810 chr14:74960811 nonsynonymous SNV 0.308 0 22 hm5C_associated_SNPs_80231 1 0 1 0 2 ISCA2 chr14:74960855 5'GT 74960855 Upstream 45bp
chr21 44441504 44441504 1 + C T COAD 44441502 + 44441482 44441522 41 GGCGTCCTGCCAAAGCATGCCACGAACGTGATGCGGTCCTG GGCGTCCTGCCAAAGCATGCCATGAACGTGATGCGGTCCTG < 41bp 0.858270176145873 0.6359416755614 0.09306109 0.15629894 prediction 0.444657001168947 Functional Loss - PKNOX1 ENSG00000160199 CDS Human protein_coding chr21:44441502 chr21:44441504 nonsynonymous SNV 0.494 5 23 hm5C_associated_SNPs_80232 0 0 0 0 2 PKNOX1 chr21:44441413 3'AG 44441413 Downstream 92bp
chr21 44441504 44441504 1 + C T COAD 44441502 + 44441482 44441522 41 GGCGTCCTGCCAAAGCATGCCACGAACGTGATGCGGTCCTG GGCGTCCTGCCAAAGCATGCCATGAACGTGATGCGGTCCTG < 41bp 0.858270176145873 0.6359416755614 0.09306109 0.15629894 prediction 0.444657001168947 Functional Loss - PKNOX1 ENSG00000160199 CDS Human protein_coding chr21:44441502 chr21:44441504 nonsynonymous SNV 0.494 5 23 hm5C_associated_SNPs_80232 0 0 0 0 2 PKNOX1 chr21:44441541 5'GT 44441541 Upstream 38bp
chr17 7758850 7758850 1 + G A UCEC 7758847 + 7758827 7758867 41 TGGTCACCGGATTCCTGCTCCTCGTGCCGCTGCTCGTGCTT TGGTCACCGGATTCCTGCTCCTCATGCCGCTGCTCGTGCTT < 41bp 0.777918403056963 0.555591122283631 0.36757073 0.2949794 prediction 0.444654561546664 Functional Loss - TMEM88 ENSG00000167874 CDS Human protein_coding chr17:7758847 chr17:7758850 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_80233 0 0 0 0 1 TMEM88 chr17:7758763 3'AG 7758763 Downstream 88bp
chr9 139232385 139232385 1 + T C UCEC 139232384 + 139232364 139232404 41 TGGGGAACGCCCACGTCTTCCTGGGGCGCTTTGACGTGGCC TGGGGAACGCCCACGTCTTCCCGGGGCGCTTTGACGTGGCC < 41bp 0.801680641763026 0.579372604129201 0.63498724 0.8540089 prediction 0.444616075267651 Functional Loss - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139232384 chr9:139232385 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_80237 0 0 0 0 2 GPSM1 chr9:139232303 3'AG 139232303 Downstream 83bp
chr9 139232385 139232385 1 + T C UCEC 139232384 + 139232364 139232404 41 TGGGGAACGCCCACGTCTTCCTGGGGCGCTTTGACGTGGCC TGGGGAACGCCCACGTCTTCCCGGGGCGCTTTGACGTGGCC < 41bp 0.801680641763026 0.579372604129201 0.63498724 0.8540089 prediction 0.444616075267651 Functional Loss - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139232384 chr9:139232385 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_80237 0 0 0 0 2 GPSM1 chr9:139232418 5'GT 139232418 Upstream 34bp
chr12 12514215 12514215 1 + G A OV 12514212 + 12514192 12514232 41 AGCTCAGGGCTCCCAGGCCTCACGGAACGTCAGCAACGATC AGCTCAGGGCTCCCAGGCCTCACAGAACGTCAGCAACGATC < 41bp 0.78373944594286 0.561434066275734 0.12548015 0.10986787 prediction 0.444610759334253 Functional Loss - BORCS5 ENSG00000165714 CDS Human protein_coding chr12:12514212 chr12:12514215 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_80240 0 0 0 0 2 BORCS5 chr12:12514140 3'AG 12514140 Downstream 76bp
chr12 12514215 12514215 1 + G A OV 12514212 + 12514192 12514232 41 AGCTCAGGGCTCCCAGGCCTCACGGAACGTCAGCAACGATC AGCTCAGGGCTCCCAGGCCTCACAGAACGTCAGCAACGATC < 41bp 0.78373944594286 0.561434066275734 0.12548015 0.10986787 prediction 0.444610759334253 Functional Loss - BORCS5 ENSG00000165714 CDS Human protein_coding chr12:12514212 chr12:12514215 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_80240 0 0 0 0 2 BORCS5 chr12:12514283 5'GT 12514283 Upstream 69bp
chr2 112725753 112725753 1 + G T SARC 112725751 + 112725731 112725771 41 ACTGAAGTCAGCATCCGTAACAGCACTGCACACAGCATTCT ACTGAAGTCAGCATCCGTAACATCACTGCACACAGCATTCT < 41bp 0.722302871566663 0.36672587897867 0.16031596 0.07701877 prediction 0.444605743133326 Functional Loss - MERTK ENSG00000153208 CDS Human protein_coding chr2:112725751 chr2:112725753 nonsynonymous SNV 0.312 0 23 hm5C_associated_SNPs_80243 0 0 1 0 2 MERTK chr2:112725714 3'AG 112725714 Downstream 40bp
chr2 112725753 112725753 1 + G T SARC 112725751 + 112725731 112725771 41 ACTGAAGTCAGCATCCGTAACAGCACTGCACACAGCATTCT ACTGAAGTCAGCATCCGTAACATCACTGCACACAGCATTCT < 41bp 0.722302871566663 0.36672587897867 0.16031596 0.07701877 prediction 0.444605743133326 Functional Loss - MERTK ENSG00000153208 CDS Human protein_coding chr2:112725751 chr2:112725753 nonsynonymous SNV 0.312 0 23 hm5C_associated_SNPs_80243 0 0 1 0 2 MERTK chr2:112725829 5'GT 112725829 Upstream 77bp
chr5 34863034 34863034 1 + A C rs3906383 34863030 + 34863010 34863050 41 AGTTCAGGCCAAGAAACATGCTACATCAGCCAAGAATACAC AGTTCAGGCCAAGAAACATGCTACCTCAGCCAAGAATACAC < 41bp 0.722302595806499 0.308082779187808 0.26577136 0.054493606 prediction 0.444605191612998 Functional Loss - TTC23L ENSG00000205838 CDS Human protein_coding chr5:34863030 chr5:34863034 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_80244 0 0 0 0 1 TTC23L chr5:34863003 3'AG 34863003 Downstream 32bp
chr18 29116302 29116302 1 + G T LUAD 29116299 + 29116279 29116319 41 TGAATGTTACTGCAGAGGACCTGGATGGACACCCAAACAGT TGAATGTTACTGCAGAGGACCTGTATGGACACCCAAACAGT < 41bp 0.722301252847288 0.331378255933399 0.49939558 0.07153079 prediction 0.444602505694575 Functional Loss - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116299 chr18:29116302 nonsynonymous SNV 0.736 4 24 hm5C_associated_SNPs_80245 0 0 1 0 1 DSG2 chr18:29116392 5'GT 29116392 Upstream 91bp
chr17 80541916 80541916 1 + G C SKCM 80541915 + 80541895 80541935 41 CCCAGCCTCTCCCAATCACGCGGGAGTGCTGTCTGCTCACT CCCAGCCTCTCCCAATCACGCCGGAGTGCTGTCTGCTCACT < 41bp 0.890027450276198 0.667727798862683 0.9027425 0.84258676 prediction 0.44459930282703 Functional Loss - FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80541915 chr17:80541916 synonymous SNV . 0 22 hm5C_associated_SNPs_80246 0 0 1 0 1 FOXK2 chr17:80541889 3'AG 80541889 Downstream 28bp
chr10 96609762 96609762 1 + T C LUAD 96609761 + 96609741 96609781 41 TGTTTGACCCTCGTCACTTTCTGGATGAAGGTGGAAATTTT TGTTTGACCCTCGTCACTTTCCGGATGAAGGTGGAAATTTT < 41bp 0.815460496481867 0.593161027327716 0.5761984 0.77461255 prediction 0.444598938308303 Functional Loss - CYP2C19 ENSG00000165841 CDS Human protein_coding chr10:96609761 chr10:96609762 nonsynonymous SNV 0.894 3 22 hm5C_associated_SNPs_80247 0 0 0 0 2 CYP2C19 chr10:96609674 3'AG 96609674 Downstream 89bp
chr10 96609762 96609762 1 + T C LUAD 96609761 + 96609741 96609781 41 TGTTTGACCCTCGTCACTTTCTGGATGAAGGTGGAAATTTT TGTTTGACCCTCGTCACTTTCCGGATGAAGGTGGAAATTTT < 41bp 0.815460496481867 0.593161027327716 0.5761984 0.77461255 prediction 0.444598938308303 Functional Loss - CYP2C19 ENSG00000165841 CDS Human protein_coding chr10:96609761 chr10:96609762 nonsynonymous SNV 0.894 3 22 hm5C_associated_SNPs_80247 0 0 0 0 2 CYP2C19 chr10:96609815 5'GT 96609815 Upstream 54bp
chr5 139197080 139197080 1 + G T UCEC 139197078 + 139197058 139197098 41 CCTGGCAGCAACGAGTTTAGCAGGCTGGTGGCCGGGGAGTA CCTGGCAGCAACGAGTTTAGCATGCTGGTGGCCGGGGAGTA < 41bp 0.722289483081496 0.357651287717355 0.54889154 0.1378037 prediction 0.444578966162993 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139197078 chr5:139197080 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_80252 0 0 0 0 2 PSD2 chr5:139197066 3'AG 139197066 Downstream 15bp
chr5 139197080 139197080 1 + G T UCEC 139197078 + 139197058 139197098 41 CCTGGCAGCAACGAGTTTAGCAGGCTGGTGGCCGGGGAGTA CCTGGCAGCAACGAGTTTAGCATGCTGGTGGCCGGGGAGTA < 41bp 0.722289483081496 0.357651287717355 0.54889154 0.1378037 prediction 0.444578966162993 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139197078 chr5:139197080 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_80252 0 0 0 0 2 PSD2 chr5:139197146 5'GT 139197146 Upstream 67bp
chr1 155582326 155582326 1 + G A rs149058840 155582323 + 155582303 155582343 41 GTGGGAGCCTGGGCCTGCGACCCGAGCCACCTGTCAGCTTC GTGGGAGCCTGGGCCTGCGACCCAAGCCACCTGTCAGCTTC < 41bp 0.783302354919099 0.561015379027573 0.4810602 0.2078189 prediction 0.444573951783052 Functional Loss - MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582323 chr1:155582326 nonsynonymous SNV 0.012 0 24 hm5C_associated_SNPs_80255 0 0 1 0 1 MSTO1 chr1:155582361 5'GT 155582361 Upstream 36bp
chr14 55034815 55034815 1 + G C CESC 55034814 + 55034794 55034834 41 GAGCTGCACGTCCTCGAACGCGAGGCCAACAGCCCCGGTAA GAGCTGCACGTCCTCGAACGCCAGGCCAACAGCCCCGGTAA < 41bp 0.863955548806752 0.641668970757555 0.91302395 0.8728701 prediction 0.444573156098394 Functional Loss - SAMD4A ENSG00000020577 CDS Human protein_coding chr14:55034814 chr14:55034815 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_80256 0 0 0 0 1 SAMD4A chr14:55034830 5'GT 55034830 Upstream 16bp
chr17 40717778 40717778 1 + C T rs151074271 40717776 + 40717756 40717796 41 AGCAGCTTGTGGAACAGAGCCACGTGGTGCTCAGCACCTTG AGCAGCTTGTGGAACAGAGCCATGTGGTGCTCAGCACCTTG < 41bp 0.722285861190133 0.454451216501297 0.27162707 0.32653517 prediction 0.444571722380267 Functional Loss - COASY ENSG00000068120 CDS Human protein_coding chr17:40717776 chr17:40717778 synonymous SNV . 0 23 hm5C_associated_SNPs_80259 1 0 1 0 1 COASY chr17:40717823 5'GT 40717823 Upstream 46bp
chr18 12262964 12262964 1 + G T HNSC 12262962 + 12262942 12262982 41 AGCAGCCTGCAGGAGCTCATCAGCAAGGTGCCCCACATCCC AGCAGCCTGCAGGAGCTCATCATCAAGGTGCCCCACATCCC < 41bp 0.903062627885283 0.680777729802707 0.36669272 0.1479786 prediction 0.444569796165151 Functional Loss - CIDEA ENSG00000176194 CDS Human protein_coding chr18:12262962 chr18:12262964 nonsynonymous SNV 0.748 0 23 hm5C_associated_SNPs_80261 0 0 0 0 1 CIDEA chr18:12262968 5'GT 12262968 Upstream 5bp
chr14 74004517 74004517 1 + C T rs193163333 74004515 + 74004495 74004535 41 CGGCACGAGCGCTACTTCCTCCCGCCCGGGGTGCGGCGCGA CGGCACGAGCGCTACTTCCTCCTGCCCGGGGTGCGGCGCGA < 41bp 0.727705347071173 0.505421481262774 0.2097919 0.10659042 prediction 0.444567731616799 Functional Loss - ACOT1 ENSG00000184227 CDS Human protein_coding chr14:74004515 chr14:74004517 nonsynonymous SNV 0.006 0 23 hm5C_associated_SNPs_80262 0 0 0 0 1 ACOT1 chr14:74004582 5'GT 74004582 Upstream 66bp
chr12 51319257 51319257 1 + G A OV 51319254 + 51319234 51319274 41 TGGATGTGGTGGTCTGCACCCTGGTGCTGTGCTCTGTGAAG TGGATGTGGTGGTCTGCACCCTGATGCTGTGCTCTGTGAAG < 41bp 0.722280940223717 0.475638216325267 0.39973018 0.32840282 prediction 0.444561880447433 Functional Loss - METTL7A ENSG00000185432 CDS Human protein_coding chr12:51319254 chr12:51319257 nonsynonymous SNV 0.984 4 24 hm5C_associated_SNPs_80263 0 0 1 0 1 METTL7A chr12:51319319 5'GT 51319319 Upstream 63bp
chr9 97220683 97220683 1 + C T COAD 97220680 + 97220660 97220700 41 GCACTGTATGGCTTCATATTCTACATGTTCCATGTGGAACT GCACTGTATGGCTTCATATTCTATATGTTCCATGTGGAACT < 41bp 0.765321062600607 0.54304203008359 0.4734522 0.16363817 prediction 0.444558065034034 Functional Loss - MFSD14B ENSG00000148110 CDS Human protein_coding chr9:97220680 chr9:97220683 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_80264 0 0 1 0 2 MFSD14B chr9:97220604 3'AG 97220604 Downstream 80bp
chr9 97220683 97220683 1 + C T COAD 97220680 + 97220660 97220700 41 GCACTGTATGGCTTCATATTCTACATGTTCCATGTGGAACT GCACTGTATGGCTTCATATTCTATATGTTCCATGTGGAACT < 41bp 0.765321062600607 0.54304203008359 0.4734522 0.16363817 prediction 0.444558065034034 Functional Loss - MFSD14B ENSG00000148110 CDS Human protein_coding chr9:97220680 chr9:97220683 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_80264 0 0 1 0 2 MFSD14B chr9:97220746 5'GT 97220746 Upstream 64bp
chr15 28900520 28900520 1 + G A LUSC 28900517 + 28900497 28900537 41 GTGGAGAAGCTGTTTGACTTCTTGGGGAGCTTGCTCACTAT GTGGAGAAGCTGTTTGACTTCTTAGGGAGCTTGCTCACTAT < 41bp 0.764558753321981 0.54228319474771 0.23937479 0.096211225 prediction 0.444551117148543 Functional Loss - HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28900517 chr15:28900520 . . 0 24 hm5C_associated_SNPs_80266 0 0 1 0 1 HERC2P9 chr15:28900566 5'GT 28900566 Upstream 47bp
chr2 1544423 1544423 1 + C T UCEC 1544421 + 1544401 1544441 41 CGGAGACAGGCGGAGGAACTCCCGAGCTGAGATGCGGAAAG CGGAGACAGGCGGAGGAACTCCTGAGCTGAGATGCGGAAAG < 41bp 0.821989460517899 0.599717280330907 0.87794244 0.8625196 prediction 0.444544360373985 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1544421 chr2:1544423 synonymous SNV . 0 23 hm5C_associated_SNPs_80267 0 0 0 0 1 TPO chr2:1544366 3'AG 1544366 Downstream 58bp
chr11 118851338 118851338 1 + C T rs557694929 118851336 + 118851316 118851356 41 GCACACGGCCTCGATCTTGCCTCTGGAAGTTGACCGAGGAG GCACACGGCCTCGATCTTGCCTTTGGAAGTTGACCGAGGAG < 41bp 0.722271758010855 0.44762340520549 0.15004227 0.07670349 prediction 0.44454351602171 Functional Loss - FOXR1 ENSG00000176302 CDS Human protein_coding chr11:118851336 chr11:118851338 synonymous SNV . 0 23 hm5C_associated_SNPs_80269 0 0 0 0 1 FOXR1 chr11:118851278 3'AG 118851278 Downstream 61bp
chr3 19988996 19988996 1 + G C rs115902578 19988995 + 19988975 19989015 41 GAAGCTTCGGCCCCGCAGCTCGGCTTGCTGCGGTCTCAGGT GAAGCTTCGGCCCCGCAGCTCCGCTTGCTGCGGTCTCAGGT < 41bp 0.722267996699019 0.422617994957932 0.32743016 0.28384474 prediction 0.444535993398038 Functional Loss - RAB5A ENSG00000144566 UTR5 Human protein_coding chr3:19988995 chr3:19988996 . . 0 22 hm5C_associated_SNPs_80271 0 0 1 0 1 RAB5A chr3:19989013 5'GT 19989013 Upstream 18bp
chr19 54445378 54445378 1 + G A DLBC 54445375 + 54445355 54445395 41 ACACCCGGCCTTCTACCGCCCGCGTCTCAGCGACTGCTCCG ACACCCGGCCTTCTACCGCCCGCATCTCAGCGACTGCTCCG < 41bp 0.722266896590117 0.48363715344576 0.30653346 0.082594395 prediction 0.444533793180233 Functional Loss - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54445375 chr19:54445378 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_80272 0 0 0 0 1 CACNG7 chr19:54445290 3'AG 54445290 Downstream 89bp
chr16 68390697 68390697 1 + C T rs61733486 68390695 + 68390675 68390715 41 GCCTCCTGGAGCCTGCAGACCCCGAGGTAGTGCCTGCGCAC GCCTCCTGGAGCCTGCAGACCCTGAGGTAGTGCCTGCGCAC < 41bp 0.822738150659882 0.600472494575716 0.40073282 0.32265118 prediction 0.444531312168332 Functional Loss - PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68390695 chr16:68390697 synonymous SNV . 0 23 hm5C_associated_SNPs_80273 0 0 1 0 1 PRMT7 chr16:68390604 3'AG 68390604 Downstream 94bp
chr12 105380159 105380159 1 + G A rs371639910 105380156 + 105380136 105380176 41 GGTCCATGGCAAGCCCAAGGCTAGCCCGAGTTGTTCGTCGC GGTCCATGGCAAGCCCAAGGCTAACCCGAGTTGTTCGTCGC < 41bp 0.772914693460014 0.550651395597061 0.5251209 0.41313922 prediction 0.444526595725905 Functional Loss - C12orf45 ENSG00000151131 CDS Human protein_coding chr12:105380156 chr12:105380159 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_80276 0 0 1 0 1 C12orf45 chr12:105380245 5'GT 105380245 Upstream 87bp
chr12 7021983 7021983 1 + C T rs78482853 7021981 + 7021961 7022001 41 GTGCTGCTTGATAACCCATGCACGGACGAAACCAGCTACCG GTGCTGCTTGATAACCCATGCATGGACGAAACCAGCTACCG < 41bp 0.722259664104133 0.457844294274355 0.30487418 0.12218717 prediction 0.444519328208266 Functional Loss - LRRC23 ENSG00000010626 CDS Human protein_coding chr12:7021981 chr12:7021983 nonsynonymous SNV 0.004 1 23 hm5C_associated_SNPs_80278 0 0 0 0 1 LRRC23 chr12:7021894 3'AG 7021894 Downstream 90bp
chr1 207013239 207013239 1 + C T COAD 207013236 + 207013216 207013256 41 ACCAAGAACCTCCTGGCGTTCTACGTGGACAGGGTGTTCAA ACCAAGAACCTCCTGGCGTTCTATGTGGACAGGGTGTTCAA < 41bp 0.735930740902727 0.513675593464688 0.18397728 0.16506594 prediction 0.444510294876076 Functional Loss - IL19 ENSG00000142224 CDS Human protein_coding chr1:207013236 chr1:207013239 synonymous SNV . 0 24 hm5C_associated_SNPs_80282 0 0 0 0 1 IL19 chr1:207013195 3'AG 207013195 Downstream 45bp
chr19 41630688 41630688 1 + C T rs371125523 41630686 + 41630666 41630706 41 GGCTGCCGGCGCTGAAGGACCGCGCGGCCATGCCTTACACA GGCTGCCGGCGCTGAAGGACCGTGCGGCCATGCCTTACACA < 41bp 0.788228320064362 0.565978471141344 0.7060892 0.4563404 prediction 0.444499697846038 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41630686 chr19:41630688 synonymous SNV . 0 23 hm5C_associated_SNPs_80285 0 0 0 0 1 CYP2F1 chr19:41630624 3'AG 41630624 Downstream 65bp
chr1 16103683 16103683 1 + C T UCEC 16103680 + 16103660 16103700 41 TCTAGGAAATTCGCCCCCGTCTGCAGCATCTGTGAAAATCC TCTAGGAAATTCGCCCCCGTCTGTAGCATCTGTGAAAATCC < 41bp 0.722246304856795 0.492765005370062 0.07501829 0.04947999 prediction 0.44449260971359 Functional Loss - FBLIM1 ENSG00000162458 CDS Human protein_coding chr1:16103680 chr1:16103683 synonymous SNV . 0 24 hm5C_associated_SNPs_80287 0 0 0 0 2 FBLIM1 chr1:16103665 3'AG 16103665 Downstream 19bp
chr1 16103683 16103683 1 + C T UCEC 16103680 + 16103660 16103700 41 TCTAGGAAATTCGCCCCCGTCTGCAGCATCTGTGAAAATCC TCTAGGAAATTCGCCCCCGTCTGTAGCATCTGTGAAAATCC < 41bp 0.722246304856795 0.492765005370062 0.07501829 0.04947999 prediction 0.44449260971359 Functional Loss - FBLIM1 ENSG00000162458 CDS Human protein_coding chr1:16103680 chr1:16103683 synonymous SNV . 0 24 hm5C_associated_SNPs_80287 0 0 0 0 2 FBLIM1 chr1:16103782 5'GT 16103782 Upstream 100bp
chr15 59102523 59102523 1 + C T LIHC 59102520 + 59102500 59102540 41 TGTTCGAGTGTTTGAATATACACCAGAATGCATAGTATTTG TGTTCGAGTGTTTGAATATACACTAGAATGCATAGTATTTG < 41bp 0.745656127163823 0.523410468864304 0.008989543 0.022815794 prediction 0.444491316599038 Functional Loss - MINDY2 ENSG00000128923 CDS Human protein_coding chr15:59102520 chr15:59102523 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_80289 0 0 1 0 2 MINDY2 chr15:59102429 3'AG 59102429 Downstream 95bp
chr15 59102523 59102523 1 + C T LIHC 59102520 + 59102500 59102540 41 TGTTCGAGTGTTTGAATATACACCAGAATGCATAGTATTTG TGTTCGAGTGTTTGAATATACACTAGAATGCATAGTATTTG < 41bp 0.745656127163823 0.523410468864304 0.008989543 0.022815794 prediction 0.444491316599038 Functional Loss - MINDY2 ENSG00000128923 CDS Human protein_coding chr15:59102520 chr15:59102523 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_80289 0 0 1 0 2 MINDY2 chr15:59102587 5'GT 59102587 Upstream 65bp
chr3 51718650 51718650 1 + G A SKCM 51718647 + 51718627 51718667 41 CCTGCCTTGGACACCTACATCAAGGTGAGGCACAGGCCTGG CCTGCCTTGGACACCTACATCAAAGTGAGGCACAGGCCTGG < 41bp 0.769808192993121 0.547565110392996 0.9533427 0.9038254 prediction 0.44448616520025 Functional Loss - TEX264 ENSG00000164081 CDS Human protein_coding chr3:51718647 chr3:51718650 synonymous SNV . 0 24 hm5C_associated_SNPs_80292 0 0 0 0 1 TEX264 chr3:51718650 5'GT 51718650 Upstream 1bp
chr2 27262916 27262916 1 + G T LUAD 27262914 + 27262894 27262934 41 ACAGCTGGCTGGGGGAGACACTGCCGCTCTGGGGCTCCCAC ACAGCTGGCTGGGGGAGACACTTCCGCTCTGGGGCTCCCAC < 41bp 0.722241862918163 0.362458321558013 0.8437797 0.38907123 prediction 0.444483725836326 Functional Loss - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27262914 chr2:27262916 synonymous SNV . 0 23 hm5C_associated_SNPs_80293 0 0 1 0 1 TMEM214 chr2:27262898 3'AG 27262898 Downstream 19bp
chr20 46276031 46276031 1 + G A SKCM 46276028 + 46276008 46276048 41 TCCTCTCCAAGGAATGCACCCACGAGCCAACATCATGAGAC TCCTCTCCAAGGAATGCACCCACAAGCCAACATCATGAGAC < 41bp 0.738537844695114 0.516298694316109 0.026995957 0.021534145 prediction 0.444478300758011 Functional Loss - NCOA3 ENSG00000124151 CDS Human protein_coding chr20:46276028 chr20:46276031 nonsynonymous SNV 0.039 4 24 hm5C_associated_SNPs_80295 0 0 1 0 1 NCOA3 chr20:46276110 5'GT 46276110 Upstream 80bp
chr11 70208417 70208417 1 + G A UCEC 70208414 + 70208394 70208434 41 CTCTGGGTTGGGATGCCAGCCTGGTATGTGGCTGCCTGCCG CTCTGGGTTGGGATGCCAGCCTGATATGTGGCTGCCTGCCG < 41bp 0.785986967907259 0.563747889593137 0.35747862 0.29267293 prediction 0.444478156628244 Functional Loss - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70208414 chr11:70208417 stopgain 1.000 1 24 hm5C_associated_SNPs_80296 0 0 1 0 1 PPFIA1 chr11:70208394 3'AG 70208394 Downstream 24bp
chr4 134073901 134073901 1 + C T LUSC 134073899 + 134073879 134073919 41 GACCAGCAGCCTGATATCATCTCCAACGGAAGCATTTTGTC GACCAGCAGCCTGATATCATCTTCAACGGAAGCATTTTGTC < 41bp 0.722224431545451 0.435327472404652 0.9600227 0.18493053 prediction 0.444448863090901 Functional Loss - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134073899 chr4:134073901 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_80300 0 0 1 0 1 PCDH10 chr4:134073926 5'GT 134073926 Upstream 26bp
chr6 50805757 50805757 1 + G A LUAD 50805754 + 50805734 50805774 41 AAAATCGGTTTGAATTTACCCGCGGGCAGGCGCAAAGCAGC AAAATCGGTTTGAATTTACCCGCAGGCAGGCGCAAAGCAGC < 41bp 0.773159672312502 0.550937305791195 0.2954183 0.036732614 prediction 0.444444733042613 Functional Loss - TFAP2B ENSG00000008196 CDS Human protein_coding chr6:50805754 chr6:50805757 synonymous SNV . 0 24 hm5C_associated_SNPs_80302 0 0 0 0 2 TFAP2B chr6:50805688 3'AG 50805688 Downstream 70bp
chr6 50805757 50805757 1 + G A LUAD 50805754 + 50805734 50805774 41 AAAATCGGTTTGAATTTACCCGCGGGCAGGCGCAAAGCAGC AAAATCGGTTTGAATTTACCCGCAGGCAGGCGCAAAGCAGC < 41bp 0.773159672312502 0.550937305791195 0.2954183 0.036732614 prediction 0.444444733042613 Functional Loss - TFAP2B ENSG00000008196 CDS Human protein_coding chr6:50805754 chr6:50805757 synonymous SNV . 0 24 hm5C_associated_SNPs_80302 0 0 0 0 2 TFAP2B chr6:50805806 5'GT 50805806 Upstream 50bp
chr1 41304053 41304053 1 + C T SKCM 41304051 + 41304031 41304071 41 CGCTGCCTGCGCTCTGGCACCTCGGCCAGCCTGGGCGCCGT CGCTGCCTGCGCTCTGGCACCTTGGCCAGCCTGGGCGCCGT < 41bp 0.819903398425382 0.597681120096679 0.36724865 0.098181784 prediction 0.444444556657406 Functional Loss - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41304051 chr1:41304053 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_80303 0 0 0 0 1 KCNQ4 chr1:41303983 3'AG 41303983 Downstream 71bp
chr2 172822981 172822981 1 + C T LUAD 172822978 + 172822958 172822998 41 ACGCTCTTTGCGACCGTAGGCTACATGACAGTCTATAATTA ACGCTCTTTGCGACCGTAGGCTATATGACAGTCTATAATTA < 41bp 0.740975784425487 0.518754467729936 0.11572477 0.10734677 prediction 0.444442633391101 Functional Loss - HAT1 ENSG00000128708 CDS Human protein_coding chr2:172822978 chr2:172822981 synonymous SNV . 0 24 hm5C_associated_SNPs_80304 0 0 1 0 2 HAT1 chr2:172822930 3'AG 172822930 Downstream 52bp
chr2 172822981 172822981 1 + C T LUAD 172822978 + 172822958 172822998 41 ACGCTCTTTGCGACCGTAGGCTACATGACAGTCTATAATTA ACGCTCTTTGCGACCGTAGGCTATATGACAGTCTATAATTA < 41bp 0.740975784425487 0.518754467729936 0.11572477 0.10734677 prediction 0.444442633391101 Functional Loss - HAT1 ENSG00000128708 CDS Human protein_coding chr2:172822978 chr2:172822981 synonymous SNV . 0 24 hm5C_associated_SNPs_80304 0 0 1 0 2 HAT1 chr2:172823034 5'GT 172823034 Upstream 54bp
chr2 133175391 133175391 1 + G A SKCM 133175388 + 133175368 133175408 41 AAGCCAGAAGGGCTCGCTGGCCGGGGGCACGCGGCCTCCGC AAGCCAGAAGGGCTCGCTGGCCGAGGGCACGCGGCCTCCGC < 41bp 0.800809819285734 0.578590529934133 0.9230045 0.8832569 prediction 0.444438578703202 Functional Loss - GPR39 ENSG00000183840 CDS Human protein_coding chr2:133175388 chr2:133175391 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_80307 0 0 0 0 1 GPR39 chr2:133175471 5'GT 133175471 Upstream 81bp
chr21 30547129 30547129 1 + G T LUAD 30547127 + 30547107 30547147 41 AGGCTCTGACGGAGGAGAATCGGACGTTGAGGTTGGCCCAG AGGCTCTGACGGAGGAGAATCGTACGTTGAGGTTGGCCCAG < 41bp 0.722218203317597 0.383852241013201 0.9176842 0.35594591 prediction 0.444436406635195 Functional Loss - MAP3K7CL ENSG00000156265 CDS Human protein_coding chr21:30547127 chr21:30547129 synonymous SNV . 0 23 hm5C_associated_SNPs_80309 0 0 0 0 1 MAP3K7CL chr21:30547033 3'AG 30547033 Downstream 97bp
chr16 89167169 89167169 1 + G T HNSC 89167167 + 89167147 89167187 41 CGGCTGGCGCCTGCGAGACACAGAGGAAGTGGTCTTCTGCA CGGCTGGCGCCTGCGAGACACATAGGAAGTGGTCTTCTGCA < 41bp 0.722215701849241 0.369871335398433 0.9091658 0.3536213 prediction 0.444431403698481 Functional Loss - ACSF3 ENSG00000176715 CDS Human protein_coding chr16:89167167 chr16:89167169 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_80311 0 0 0 0 1 ACSF3 chr16:89167070 3'AG 89167070 Downstream 100bp
chr6 10728939 10728939 1 + C T CESC 10728936 + 10728916 10728956 41 CCACTCTGGAAAATTCATGCCTGCAGGTTTAATTGCAGGTG CCACTCTGGAAAATTCATGCCTGTAGGTTTAATTGCAGGTG < 41bp 0.722215208318335 0.499315156125917 0.31232613 0.28684247 prediction 0.444430416636669 Functional Loss - TMEM14C ENSG00000111843 CDS Human protein_coding chr6:10728936 chr6:10728939 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_80312 0 0 1 0 2 TMEM14C chr6:10728873 3'AG 10728873 Downstream 67bp
chr6 10728939 10728939 1 + C T CESC 10728936 + 10728916 10728956 41 CCACTCTGGAAAATTCATGCCTGCAGGTTTAATTGCAGGTG CCACTCTGGAAAATTCATGCCTGTAGGTTTAATTGCAGGTG < 41bp 0.722215208318335 0.499315156125917 0.31232613 0.28684247 prediction 0.444430416636669 Functional Loss - TMEM14C ENSG00000111843 CDS Human protein_coding chr6:10728936 chr6:10728939 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_80312 0 0 1 0 2 TMEM14C chr6:10728960 5'GT 10728960 Upstream 22bp
chr7 75126187 75126187 1 + C T rs374159774 75126185 + 75126165 75126205 41 TGAAGCGACGGCGAGTGTCGCTCGTGCTCCCTGAGCACCAC TGAAGCGACGGCGAGTGTCGCTTGTGCTCCCTGAGCACCAC < 41bp 0.79930446929267 0.577089460983071 0.36911207 0.12376225 prediction 0.444430016619197 Functional Loss - SPDYE5 ENSG00000170092 ncRNA_exonic Human protein_coding chr7:75126185 chr7:75126187 . . 0 23 hm5C_associated_SNPs_80313 0 0 0 0 1 SPDYE5 chr7:75126227 5'GT 75126227 Upstream 41bp
chr1 1961505 1961505 1 + C T SKCM 1961503 + 1961483 1961523 41 TGGCCATCTCCCGCCGGCAGCGCCGCGTCCCGGGGAACCTG TGGCCATCTCCCGCCGGCAGCGTCGCGTCCCGGGGAACCTG < 41bp 0.775865383841955 0.553652959890924 0.2402516 0.33217698 prediction 0.444424847902063 Functional Loss - GABRD ENSG00000187730 CDS Human protein_coding chr1:1961503 chr1:1961505 synonymous SNV . 0 23 hm5C_associated_SNPs_80314 0 0 0 0 1 GABRD chr1:1961422 3'AG 1961422 Downstream 84bp
chr19 58772316 58772316 1 + A C LUSC 58772312 + 58772292 58772332 41 TGGAAGTGTACAGGAGTGGACCGGAGGAGCCACCCTCTTTG TGGAAGTGTACAGGAGTGGACCGGCGGAGCCACCCTCTTTG < 41bp 0.722210755061745 0.450418939217951 0.8862845 0.82335067 prediction 0.444421510123491 Functional Loss - ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58772312 chr19:58772316 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_80315 0 0 0 0 1 ZNF544 chr19:58772217 3'AG 58772217 Downstream 100bp
chr17 7612511 7612511 1 + C T PRAD 7612509 + 7612489 7612529 41 CCCCACCAGCAATGCAACCTCCCGGGGTGCTGAAGGCCCCC CCCCACCAGCAATGCAACCTCCTGGGGTGCTGAAGGCCCCC < 41bp 0.78627593262455 0.56406532065364 0.18262023 0.14449012 prediction 0.444421223941818 Functional Loss - EFNB3 ENSG00000108947 CDS Human protein_coding chr17:7612509 chr17:7612511 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_80316 0 0 0 0 1 EFNB3 chr17:7612485 3'AG 7612485 Downstream 27bp
chr3 178543515 178543515 1 + G A UCEC 178543512 + 178543492 178543532 41 CCATCATGATGTATTTTCTGCTGGGAATCACACTCCTGCGC CCATCATGATGTATTTTCTGCTGAGAATCACACTCCTGCGC < 41bp 0.72219924512422 0.487019047333223 0.43884566 0.29928485 prediction 0.44439849024844 Functional Loss - KCNMB2 ENSG00000197584 CDS Human protein_coding chr3:178543512 chr3:178543515 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_80321 0 0 0 0 1 KCNMB2 chr3:178543546 5'GT 178543546 Upstream 32bp
chr3 100348485 100348485 1 + G A UCEC 100348482 + 100348462 100348502 41 AGCACCCCTACAGAGTTCTGCAGGAATGGTGGAACCTGGGA AGCACCCCTACAGAGTTCTGCAGAAATGGTGGAACCTGGGA < 41bp 0.770585217789067 0.548387442692092 0.20257917 0.12836948 prediction 0.44439555019395 Functional Loss - ADGRG7 ENSG00000144820 CDS Human protein_coding chr3:100348482 chr3:100348485 synonymous SNV . 0 24 hm5C_associated_SNPs_80323 0 0 0 0 2 ADGRG7 chr3:100348442 3'AG 100348442 Downstream 44bp
chr3 100348485 100348485 1 + G A UCEC 100348482 + 100348462 100348502 41 AGCACCCCTACAGAGTTCTGCAGGAATGGTGGAACCTGGGA AGCACCCCTACAGAGTTCTGCAGAAATGGTGGAACCTGGGA < 41bp 0.770585217789067 0.548387442692092 0.20257917 0.12836948 prediction 0.44439555019395 Functional Loss - ADGRG7 ENSG00000144820 CDS Human protein_coding chr3:100348482 chr3:100348485 synonymous SNV . 0 24 hm5C_associated_SNPs_80323 0 0 0 0 2 ADGRG7 chr3:100348555 5'GT 100348555 Upstream 71bp
chr1 161134932 161134932 1 + C T BLCA 161134930 + 161134910 161134950 41 TTGGCATGTCTACAATGACTCTCGGTGAGAATAGCCTCCTA TTGGCATGTCTACAATGACTCTTGGTGAGAATAGCCTCCTA < 41bp 0.829274731845767 0.6070788359356 0.22760355 0.36700436 prediction 0.444391791820334 Functional Loss - USP21 ENSG00000143258 CDS Human protein_coding chr1:161134930 chr1:161134932 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_80324 0 0 1 0 2 USP21 chr1:161134861 3'AG 161134861 Downstream 72bp
chr1 161134932 161134932 1 + C T BLCA 161134930 + 161134910 161134950 41 TTGGCATGTCTACAATGACTCTCGGTGAGAATAGCCTCCTA TTGGCATGTCTACAATGACTCTTGGTGAGAATAGCCTCCTA < 41bp 0.829274731845767 0.6070788359356 0.22760355 0.36700436 prediction 0.444391791820334 Functional Loss - USP21 ENSG00000143258 CDS Human protein_coding chr1:161134930 chr1:161134932 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_80324 0 0 1 0 2 USP21 chr1:161134933 5'GT 161134933 Upstream 2bp
chr1 36054073 36054073 1 + G T THYM 36054070 + 36054050 36054090 41 CTCAGCTCAACGTCCAAGTACAAGGTGACGGTGGGGGAGGT CTCAGCTCAACGTCCAAGTACAATGTGACGGTGGGGGAGGT < 41bp 0.722192976146061 0.319773295565061 0.9048058 0.39416 prediction 0.444385952292122 Functional Loss - TFAP2E ENSG00000116819 CDS Human protein_coding chr1:36054070 chr1:36054073 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_80326 0 0 0 0 1 TFAP2E chr1:36054153 5'GT 36054153 Upstream 81bp
chr17 78163630 78163630 1 + C T rs537507973 78163628 + 78163608 78163648 41 GCTGGTGGAGCGCATCCACTCGCTGCGGGAGCGGGCCGTGG GCTGGTGGAGCGCATCCACTCGTTGCGGGAGCGGGCCGTGG < 41bp 0.801504370521746 0.579313328645394 0.3580479 0.33960322 prediction 0.444382083752705 Functional Loss - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78163628 chr17:78163630 synonymous SNV . 0 23 hm5C_associated_SNPs_80327 0 0 0 0 2 CARD14 chr17:78163552 3'AG 78163552 Downstream 79bp
chr17 78163630 78163630 1 + C T rs537507973 78163628 + 78163608 78163648 41 GCTGGTGGAGCGCATCCACTCGCTGCGGGAGCGGGCCGTGG GCTGGTGGAGCGCATCCACTCGTTGCGGGAGCGGGCCGTGG < 41bp 0.801504370521746 0.579313328645394 0.3580479 0.33960322 prediction 0.444382083752705 Functional Loss - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78163628 chr17:78163630 synonymous SNV . 0 23 hm5C_associated_SNPs_80327 0 0 0 0 2 CARD14 chr17:78163671 5'GT 78163671 Upstream 42bp
chr12 72893359 72893359 1 + G A SKCM 72893356 + 72893336 72893376 41 CCAGTTCCCATCCAGTATCACAGGAAGTGCTGCAGGCAACA CCAGTTCCCATCCAGTATCACAGAAAGTGCTGCAGGCAACA < 41bp 0.722186502525139 0.490141892461706 0.39119935 0.13681 prediction 0.444373005050279 Functional Loss - TRHDE ENSG00000072657 CDS Human protein_coding chr12:72893356 chr12:72893359 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_80329 0 0 0 0 2 TRHDE chr12:72893278 3'AG 72893278 Downstream 82bp
chr12 72893359 72893359 1 + G A SKCM 72893356 + 72893336 72893376 41 CCAGTTCCCATCCAGTATCACAGGAAGTGCTGCAGGCAACA CCAGTTCCCATCCAGTATCACAGAAAGTGCTGCAGGCAACA < 41bp 0.722186502525139 0.490141892461706 0.39119935 0.13681 prediction 0.444373005050279 Functional Loss - TRHDE ENSG00000072657 CDS Human protein_coding chr12:72893356 chr12:72893359 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_80329 0 0 0 0 2 TRHDE chr12:72893415 5'GT 72893415 Upstream 57bp
chr21 45826592 45826592 1 + G C BRCA 45826588 + 45826568 45826608 41 GCCGGGTGGACTGGCTGTTCCGAGGGGCCGTCTACCACTCC GCCGGGTGGACTGGCTGTTCCGAGCGGCCGTCTACCACTCC < 41bp 0.863198941548365 0.641013120730702 0.9371381 0.75185794 prediction 0.444371641635326 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45826588 chr21:45826592 nonsynonymous SNV 0.673 4 25 hm5C_associated_SNPs_80330 0 0 0 0 1 TRPM2 chr21:45826648 5'GT 45826648 Upstream 57bp
chr1 89847351 89847351 1 + T C UCEC 89847350 + 89847330 89847370 41 ACTCTGGCCCAGCGTGAGAACTCAGCGGCCGTGCAGAGGGC ACTCTGGCCCAGCGTGAGAACCCAGCGGCCGTGCAGAGGGC < 41bp 0.72218366288196 0.460374648524532 0.18097022 0.21387196 prediction 0.444367325763919 Functional Loss - GBP6 ENSG00000183347 CDS Human protein_coding chr1:89847350 chr1:89847351 nonsynonymous SNV 0.246 1 22 hm5C_associated_SNPs_80332 0 0 0 0 1 GBP6 chr1:89847253 3'AG 89847253 Downstream 99bp
chr11 133909733 133909733 1 + G A rs2276073 133909730 + 133909710 133909750 41 TGGACTCTACCTGGAGCAGCCTCGGTGCAGAGCCCATGCCC TGGACTCTACCTGGAGCAGCCTCAGTGCAGAGCCCATGCCC < 41bp 0.75617916714311 0.533998773532106 0.44725513 0.2893049 prediction 0.444360787222007 Functional Loss - LOC100128239 ENSG00000204241 ncRNA_exonic Human lincRNA chr11:133909730 chr11:133909733 . . 0 24 hm5C_associated_SNPs_80333 0 0 0 0 1 LOC100128239 chr11:133909657 3'AG 133909657 Downstream 77bp
chr17 67516411 67516411 1 + G T HNSC 67516408 + 67516388 67516428 41 TTCCTGAAACAATTGGTCTCCAGGGTGATGTGTGGATCTGC TTCCTGAAACAATTGGTCTCCAGTGTGATGTGTGGATCTGC < 41bp 0.722177545192429 0.345723595367286 0.77664495 0.19570038 prediction 0.444355090384859 Functional Loss - MAP2K6 ENSG00000108984 CDS Human protein_coding chr17:67516408 chr17:67516411 nonsynonymous SNV 0.843 3 24 hm5C_associated_SNPs_80336 0 0 0 2 1 MAP2K6 chr17:67516411 3'AG 67516411 Downstream 1bp
chr1 182827280 182827280 1 + G T UCEC 182827278 + 182827258 182827298 41 TGGATCAAATAAGAAATTGGCAGCACAGTCCTGTGCCCTGT TGGATCAAATAAGAAATTGGCATCACAGTCCTGTGCCCTGT < 41bp 0.722177496815103 0.383730775333199 0.14005065 0.037805617 prediction 0.444354993630206 Functional Loss - DHX9 ENSG00000135829 CDS Human protein_coding chr1:182827278 chr1:182827280 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_80337 0 0 1 0 2 DHX9 chr1:182827239 3'AG 182827239 Downstream 42bp
chr1 182827280 182827280 1 + G T UCEC 182827278 + 182827258 182827298 41 TGGATCAAATAAGAAATTGGCAGCACAGTCCTGTGCCCTGT TGGATCAAATAAGAAATTGGCATCACAGTCCTGTGCCCTGT < 41bp 0.722177496815103 0.383730775333199 0.14005065 0.037805617 prediction 0.444354993630206 Functional Loss - DHX9 ENSG00000135829 CDS Human protein_coding chr1:182827278 chr1:182827280 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_80337 0 0 1 0 2 DHX9 chr1:182827375 5'GT 182827375 Upstream 96bp
chr17 78172381 78172381 1 + G A UCEC 78172378 + 78172358 78172398 41 ATGGCCTTGCGCCCGGGCACCCAGATTGTGATGGTGAGCCG ATGGCCTTGCGCCCGGGCACCCAAATTGTGATGGTGAGCCG < 41bp 0.760617006291895 0.538440569556493 0.1673626 0.1640454 prediction 0.444352873470804 Functional Loss - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172378 chr17:78172381 synonymous SNV . 0 24 hm5C_associated_SNPs_80338 0 0 0 0 1 CARD14 chr17:78172390 5'GT 78172390 Upstream 10bp
chr11 66330604 66330604 1 + G A STAD 66330601 + 66330581 66330621 41 CCCTACAAGGGATCCGGGGCCCCGGCTGGAGCCCTGGACTA CCCTACAAGGGATCCGGGGCCCCAGCTGGAGCCCTGGACTA < 41bp 0.722173766443667 0.486680363214652 0.8753913 0.8408986 prediction 0.444347532887334 Functional Loss - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66330601 chr11:66330604 unknown . 0 24 hm5C_associated_SNPs_80341 0 0 0 0 1 ACTN3 chr11:66330506 3'AG 66330506 Downstream 99bp
chr11 66330603 66330603 1 + C T UCEC 66330601 + 66330581 66330621 41 CCCTACAAGGGATCCGGGGCCCCGGCTGGAGCCCTGGACTA CCCTACAAGGGATCCGGGGCCCTGGCTGGAGCCCTGGACTA < 41bp 0.722173766443667 0.485207143226101 0.8753913 0.81156707 prediction 0.444347532887334 Functional Loss - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66330601 chr11:66330603 unknown 0.065 0 23 hm5C_associated_SNPs_80342 0 0 0 0 1 ACTN3 chr11:66330506 3'AG 66330506 Downstream 98bp
chr4 110884393 110884393 1 + G A HNSC 110884390 + 110884370 110884410 41 GTTCCTCTTAGCCCAGTATCCTGGGAATGTGATTGCTTTCC GTTCCTCTTAGCCCAGTATCCTGAGAATGTGATTGCTTTCC < 41bp 0.7824609589184 0.560287213436625 0.899104 0.6737858 prediction 0.444347490963549 Functional Loss - EGF ENSG00000138798 CDS Human protein_coding chr4:110884390 chr4:110884393 stopgain 0.924 1 24 hm5C_associated_SNPs_80343 0 0 0 0 2 EGF chr4:110884329 3'AG 110884329 Downstream 65bp
chr4 110884393 110884393 1 + G A HNSC 110884390 + 110884370 110884410 41 GTTCCTCTTAGCCCAGTATCCTGGGAATGTGATTGCTTTCC GTTCCTCTTAGCCCAGTATCCTGAGAATGTGATTGCTTTCC < 41bp 0.7824609589184 0.560287213436625 0.899104 0.6737858 prediction 0.444347490963549 Functional Loss - EGF ENSG00000138798 CDS Human protein_coding chr4:110884390 chr4:110884393 stopgain 0.924 1 24 hm5C_associated_SNPs_80343 0 0 0 0 2 EGF chr4:110884454 5'GT 110884454 Upstream 62bp
chr16 67578667 67578667 1 + C T PAAD 67578665 + 67578645 67578685 41 GGAGCGGCTGCTGCGGGAAGCCCGAGTACTGGAGGCAGTAT GGAGCGGCTGCTGCGGGAAGCCTGAGTACTGGAGGCAGTAT < 41bp 0.722172812961318 0.459601719083312 0.8114115 0.29666185 prediction 0.444345625922635 Functional Loss - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578665 chr16:67578667 stopgain 0.480 0 23 hm5C_associated_SNPs_80344 0 0 1 0 2 RIPOR1 chr16:67578598 3'AG 67578598 Downstream 70bp
chr16 67578667 67578667 1 + C T PAAD 67578665 + 67578645 67578685 41 GGAGCGGCTGCTGCGGGAAGCCCGAGTACTGGAGGCAGTAT GGAGCGGCTGCTGCGGGAAGCCTGAGTACTGGAGGCAGTAT < 41bp 0.722172812961318 0.459601719083312 0.8114115 0.29666185 prediction 0.444345625922635 Functional Loss - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578665 chr16:67578667 stopgain 0.480 0 23 hm5C_associated_SNPs_80344 0 0 1 0 2 RIPOR1 chr16:67578733 5'GT 67578733 Upstream 67bp
chr16 67578668 67578668 1 + G A UCEC 67578665 + 67578645 67578685 41 GGAGCGGCTGCTGCGGGAAGCCCGAGTACTGGAGGCAGTAT GGAGCGGCTGCTGCGGGAAGCCCAAGTACTGGAGGCAGTAT < 41bp 0.722172812961318 0.481952413631999 0.8114115 0.7992574 prediction 0.444345625922635 Functional Loss - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578665 chr16:67578668 nonsynonymous SNV 0.462 0 24 hm5C_associated_SNPs_80345 0 0 1 0 2 RIPOR1 chr16:67578598 3'AG 67578598 Downstream 71bp
chr16 67578668 67578668 1 + G A UCEC 67578665 + 67578645 67578685 41 GGAGCGGCTGCTGCGGGAAGCCCGAGTACTGGAGGCAGTAT GGAGCGGCTGCTGCGGGAAGCCCAAGTACTGGAGGCAGTAT < 41bp 0.722172812961318 0.481952413631999 0.8114115 0.7992574 prediction 0.444345625922635 Functional Loss - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578665 chr16:67578668 nonsynonymous SNV 0.462 0 24 hm5C_associated_SNPs_80345 0 0 1 0 2 RIPOR1 chr16:67578733 5'GT 67578733 Upstream 66bp
chr12 57957263 57957263 1 + G A LUAD 57957260 + 57957240 57957280 41 GACCGTGTATTCCCCCCAAACACGACTCAAGAGCAAGTTTA GACCGTGTATTCCCCCCAAACACAACTCAAGAGCAAGTTTA < 41bp 0.771863669920158 0.549691471375541 0.022420794 0.018648535 prediction 0.444344397089234 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57957260 chr12:57957263 synonymous SNV . 0 24 hm5C_associated_SNPs_80347 0 0 0 0 2 KIF5A chr12:57957222 3'AG 57957222 Downstream 42bp
chr12 57957263 57957263 1 + G A LUAD 57957260 + 57957240 57957280 41 GACCGTGTATTCCCCCCAAACACGACTCAAGAGCAAGTTTA GACCGTGTATTCCCCCCAAACACAACTCAAGAGCAAGTTTA < 41bp 0.771863669920158 0.549691471375541 0.022420794 0.018648535 prediction 0.444344397089234 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57957260 chr12:57957263 synonymous SNV . 0 24 hm5C_associated_SNPs_80347 0 0 0 0 2 KIF5A chr12:57957309 5'GT 57957309 Upstream 47bp
chrX 155119158 155119158 1 + G T LUAD 155119156 + 155119136 155119176 41 ATTCTTTTTGCTGTTGTTGCCAGGGGGACCACTATCCTTGC ATTCTTTTTGCTGTTGTTGCCATGGGGACCACTATCCTTGC < 41bp 0.894901719500562 0.672733578916255 0.9313486 0.83448696 prediction 0.444336281168614 Functional Loss - VAMP7 ENSG00000124333 CDS Human protein_coding chrX:155119156 chrX:155119158 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_80349 0 0 1 0 2 VAMP7 chrX:155119121 3'AG 155119121 Downstream 38bp
chrX 155119158 155119158 1 + G T LUAD 155119156 + 155119136 155119176 41 ATTCTTTTTGCTGTTGTTGCCAGGGGGACCACTATCCTTGC ATTCTTTTTGCTGTTGTTGCCATGGGGACCACTATCCTTGC < 41bp 0.894901719500562 0.672733578916255 0.9313486 0.83448696 prediction 0.444336281168614 Functional Loss - VAMP7 ENSG00000124333 CDS Human protein_coding chrX:155119156 chrX:155119158 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_80349 0 0 1 0 2 VAMP7 chrX:155119210 5'GT 155119210 Upstream 53bp
chr6 25619706 25619706 1 + G T COAD 25619704 + 25619684 25619724 41 GAAGCTGGGGCCAGCAGGCCCAGGAGTATCAAGAACAAAAG GAAGCTGGGGCCAGCAGGCCCATGAGTATCAAGAACAAAAG < 41bp 0.722167557161622 0.394834116873569 0.87524617 0.11837536 prediction 0.444335114323245 Functional Loss - CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25619704 chr6:25619706 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_80350 0 0 0 0 1 CARMIL1 chr6:25619675 3'AG 25619675 Downstream 32bp
chr19 49507653 49507653 1 + G A BRCA 49507650 + 49507630 49507670 41 CTTATTGCTGGCCAGCCGGGCACGGGGAAGACGGCCATCGC CTTATTGCTGGCCAGCCGGGCACAGGGAAGACGGCCATCGC < 41bp 0.79172788731418 0.569560527330288 0.85444343 0.6162771 prediction 0.444334719967783 Functional Loss - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49507650 chr19:49507653 synonymous SNV . 0 24 hm5C_associated_SNPs_80351 0 0 1 0 1 RUVBL2 chr19:49507675 5'GT 49507675 Upstream 23bp
chr8 42146205 42146205 1 + G A UCEC 42146202 + 42146182 42146222 41 TGCCGGCAGGAGCTCAGCCCCCGGAACCGAGAGCGGTGGTG TGCCGGCAGGAGCTCAGCCCCCGAAACCGAGAGCGGTGGTG < 41bp 0.748361596343582 0.526195824615076 0.48619983 0.29252967 prediction 0.444331543457012 Functional Loss - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42146202 chr8:42146205 synonymous SNV . 0 24 hm5C_associated_SNPs_80352 0 0 1 0 2 IKBKB chr8:42146152 3'AG 42146152 Downstream 54bp
chr8 42146205 42146205 1 + G A UCEC 42146202 + 42146182 42146222 41 TGCCGGCAGGAGCTCAGCCCCCGGAACCGAGAGCGGTGGTG TGCCGGCAGGAGCTCAGCCCCCGAAACCGAGAGCGGTGGTG < 41bp 0.748361596343582 0.526195824615076 0.48619983 0.29252967 prediction 0.444331543457012 Functional Loss - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42146202 chr8:42146205 synonymous SNV . 0 24 hm5C_associated_SNPs_80352 0 0 1 0 2 IKBKB chr8:42146246 5'GT 42146246 Upstream 42bp
chr11 66264855 66264855 1 + C T SKCM 66264852 + 66264832 66264872 41 ACCATCACTCCCACCACAGGCTCCGATGGGCGCCCAGATGC ACCATCACTCCCACCACAGGCTCTGATGGGCGCCCAGATGC < 41bp 0.724442399064666 0.502279162603246 0.22563818 0.20409435 prediction 0.444326472922839 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66264852 chr11:66264855 synonymous SNV . 0 24 hm5C_associated_SNPs_80355 0 0 1 0 1 DPP3 chr11:66264948 5'GT 66264948 Upstream 94bp
chr5 42756940 42756940 1 + C T rs3797310 42756938 + 42756918 42756958 41 GCATTCAGGGGTGTACCAGGCCCCAGAGGCAGCGGAAAGGG GCATTCAGGGGTGTACCAGGCCTCAGAGGCAGCGGAAAGGG < 41bp 0.75993140191589 0.537770316839195 0.20201674 0.25072652 prediction 0.444322170153391 Functional Loss - CCDC152 ENSG00000198865 UTR5 Human protein_coding chr5:42756938 chr5:42756940 . . 0 23 hm5C_associated_SNPs_80357 0 0 0 0 1 CCDC152 chr5:42756987 5'GT 42756987 Upstream 48bp
chr6 37445388 37445388 1 + T C STAD 37445387 + 37445367 37445407 41 GGGTGAAGGAGGTGTACAGACTGGAAGAGATGGAGAAGATT GGGTGAAGGAGGTGTACAGACCGGAAGAGATGGAGAAGATT < 41bp 0.813756091042708 0.591595286521299 0.34638774 0.4327523 prediction 0.444321609042817 Functional Loss - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37445387 chr6:37445388 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_80358 0 0 1 0 1 CMTR1 chr6:37445415 5'GT 37445415 Upstream 28bp
chr1 152975765 152975765 1 + G T PRAD 152975763 + 152975743 152975783 41 ACCAAGGTCCCTGAGCCAGGCTGTACCAAGGTCCCTGAGCC ACCAAGGTCCCTGAGCCAGGCTTTACCAAGGTCCCTGAGCC < 41bp 0.722156221354604 0.371076007407368 0.079177886 0.023555964 prediction 0.444312442709208 Functional Loss - SPRR3 ENSG00000163209 CDS Human protein_coding chr1:152975763 chr1:152975765 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_80363 0 0 0 0 1 SPRR3 chr1:152975701 3'AG 152975701 Downstream 65bp
chr4 154191528 154191528 1 + G T LUAD 154191526 + 154191506 154191546 41 AGACAGCCGGCCCCCCATGTCAGTGGTCTAGGATGGCCAGT AGACAGCCGGCCCCCCATGTCATTGGTCTAGGATGGCCAGT < 41bp 0.722152287944274 0.454880455128568 0.78799415 0.27647543 prediction 0.444304575888547 Functional Loss - TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154191526 chr4:154191528 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_80365 0 0 0 0 2 TRIM2 chr4:154191487 3'AG 154191487 Downstream 42bp
chr4 154191528 154191528 1 + G T LUAD 154191526 + 154191506 154191546 41 AGACAGCCGGCCCCCCATGTCAGTGGTCTAGGATGGCCAGT AGACAGCCGGCCCCCCATGTCATTGGTCTAGGATGGCCAGT < 41bp 0.722152287944274 0.454880455128568 0.78799415 0.27647543 prediction 0.444304575888547 Functional Loss - TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154191526 chr4:154191528 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_80365 0 0 0 0 2 TRIM2 chr4:154191490 3'AG 154191490 Downstream 39bp
chr13 101707766 101707766 1 + C T STAD 101707764 + 101707744 101707784 41 GTCATGGGGTTCATTTTGCACACGACAGATTTCATGGTTGT GTCATGGGGTTCATTTTGCACATGACAGATTTCATGGTTGT < 41bp 0.722151379390974 0.442872827182909 0.43357015 0.5806495 prediction 0.444302758781948 Functional Loss - NALCN ENSG00000102452 CDS Human protein_coding chr13:101707764 chr13:101707766 nonsynonymous SNV 0.663 1 23 hm5C_associated_SNPs_80366 0 0 0 0 1 NALCN chr13:101707798 5'GT 101707798 Upstream 33bp
chr12 9020635 9020635 1 + G T UCEC 9020633 + 9020613 9020653 41 ACACGTTGGAGGCCTCAGGCCAGGGCTGTGTCTATGTGCAG ACACGTTGGAGGCCTCAGGCCATGGCTGTGTCTATGTGCAG < 41bp 0.72214682434002 0.364602656328943 0.5264043 0.2477347 prediction 0.44429364868004 Functional Loss - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9020633 chr12:9020635 nonsynonymous SNV 0.986 0 23 hm5C_associated_SNPs_80371 0 0 0 1 1 A2ML1 chr12:9020653 5'GT 9020653 Upstream 19bp
chr11 65714412 65714412 1 + C T BLCA 65714410 + 65714390 65714430 41 CTGCAGCAGAGGTCTCAGAGCTCAAGGCAGACAGCAAAGAA CTGCAGCAGAGGTCTCAGAGCTTAAGGCAGACAGCAAAGAA < 41bp 0.722139052486556 0.453660067164136 0.0628019 0.0673849 prediction 0.444278104973113 Functional Loss - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65714410 chr11:65714412 unknown 0.005 0 23 hm5C_associated_SNPs_80373 0 0 0 1 1 TSGA10IP chr11:65714351 3'AG 65714351 Downstream 62bp
chr19 17994573 17994573 1 + A C rs73520743 17994572 + 17994552 17994592 41 GTTCCTGCCGGCCTGCAACACACCGGTGAGTGGGGGCGGGG GTTCCTGCCGGCCTGCAACACCCCGGTGAGTGGGGGCGGGG < 41bp 0.825350638149325 0.60321489754818 0.13322425 0.15690789 prediction 0.444271481202291 Functional Loss - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17994572 chr19:17994573 synonymous SNV . 0 22 hm5C_associated_SNPs_80375 2 0 0 0 2 SLC5A5 chr19:17994490 3'AG 17994490 Downstream 84bp
chr19 17994573 17994573 1 + A C rs73520743 17994572 + 17994552 17994592 41 GTTCCTGCCGGCCTGCAACACACCGGTGAGTGGGGGCGGGG GTTCCTGCCGGCCTGCAACACCCCGGTGAGTGGGGGCGGGG < 41bp 0.825350638149325 0.60321489754818 0.13322425 0.15690789 prediction 0.444271481202291 Functional Loss - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17994572 chr19:17994573 synonymous SNV . 0 22 hm5C_associated_SNPs_80375 2 0 0 0 2 SLC5A5 chr19:17994576 5'GT 17994576 Upstream 4bp
chr3 52539912 52539912 1 + T C LIHC 52539911 + 52539891 52539931 41 CCTGCCAGGGTCTCTCTAAACTGCAGGAGTTGGTGCGGTAC CCTGCCAGGGTCTCTCTAAACCGCAGGAGTTGGTGCGGTAC < 41bp 0.786961100209788 0.564825648236477 0.38562012 0.41874215 prediction 0.444270903946623 Functional Loss - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52539911 chr3:52539912 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_80376 0 0 0 0 1 STAB1 chr3:52539952 5'GT 52539952 Upstream 41bp
chr19 37960418 37960418 1 + A C ESCA 37960414 + 37960394 37960434 41 AGGAGTGGCGTGTGGGTCTCCGGAAGCTCGTCGCAGGCCAT AGGAGTGGCGTGTGGGTCTCCGGACGCTCGTCGCAGGCCAT < 41bp 0.86462395349861 0.642489794607144 0.88264 0.8874569 prediction 0.444268317782931 Functional Loss - ZNF570 ENSG00000171827 CDS Human protein_coding chr19:37960414 chr19:37960418 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_80378 0 0 0 0 2 ZNF570 chr19:37960379 3'AG 37960379 Downstream 40bp
chr19 37960418 37960418 1 + A C ESCA 37960414 + 37960394 37960434 41 AGGAGTGGCGTGTGGGTCTCCGGAAGCTCGTCGCAGGCCAT AGGAGTGGCGTGTGGGTCTCCGGACGCTCGTCGCAGGCCAT < 41bp 0.86462395349861 0.642489794607144 0.88264 0.8874569 prediction 0.444268317782931 Functional Loss - ZNF570 ENSG00000171827 CDS Human protein_coding chr19:37960414 chr19:37960418 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_80378 0 0 0 0 2 ZNF570 chr19:37960459 5'GT 37960459 Upstream 42bp
chr11 15247257 15247257 1 + C T UCEC 15247254 + 15247234 15247274 41 CTGGCCTCTGCGGCCCTTGCCAACATCACGTTCTTTGACAC CTGGCCTCTGCGGCCCTTGCCAATATCACGTTCTTTGACAC < 41bp 0.729735199097516 0.507601462609765 0.08037451 0.042832106 prediction 0.444267472975501 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15247254 chr11:15247257 synonymous SNV . 0 24 hm5C_associated_SNPs_80379 0 0 0 0 1 INSC chr11:15247196 3'AG 15247196 Downstream 62bp
chr4 88987002 88987002 1 + C T GBM 88986999 + 88986979 88987019 41 AACTGACCGAACATGAACATCAGCAGATGAGAGACGACTTG AACTGACCGAACATGAACATCAGTAGATGAGAGACGACTTG < 41bp 0.738572157047915 0.516440164345408 0.18677193 0.1376161 prediction 0.444263985405015 Functional Loss - PKD2 ENSG00000118762 CDS Human protein_coding chr4:88986999 chr4:88987002 stopgain 0.993 1 24 hm5C_associated_SNPs_80380 0 0 0 0 1 PKD2 chr4:88986914 3'AG 88986914 Downstream 89bp
chr5 76714063 76714063 1 + G A rs539447103 76714060 + 76714040 76714080 41 TCCCCATATCCCAGGGAAGCCTCGATCAGTTGGATGAGGTG TCCCCATATCCCAGGGAAGCCTCAATCAGTTGGATGAGGTG < 41bp 0.75331972447748 0.531188552090196 0.9221424 0.90843606 prediction 0.444262344774567 Functional Loss - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76714060 chr5:76714063 nonsynonymous SNV 0.961 1 24 hm5C_associated_SNPs_80381 1 0 0 0 1 PDE8B chr5:76714054 3'AG 76714054 Downstream 10bp
chr14 94467500 94467500 1 + G T LIHC 94467497 + 94467477 94467517 41 CGCTGTCTCCGTAGGCTGCACGGGATGGGAGGAGCCGGAGG CGCTGTCTCCGTAGGCTGCACGGTATGGGAGGAGCCGGAGG < 41bp 0.921515990202293 0.699390533342457 0.7329755 0.43394104 prediction 0.444250913719672 Functional Loss - C14orf48 ENSG00000175699 ncRNA_exonic Human protein_coding chr14:94467497 chr14:94467500 . . 0 24 hm5C_associated_SNPs_80384 0 0 0 0 1 C14orf48 chr14:94467491 3'AG 94467491 Downstream 10bp
chr5 157106938 157106938 1 + C T rs555792374 157106936 + 157106916 157106956 41 TGACAGAGCAGCTCAGAAAGCTCGGGCGATGGAGAGAGGAA TGACAGAGCAGCTCAGAAAGCTTGGGCGATGGAGAGAGGAA < 41bp 0.832103910462457 0.609981107275504 0.17499954 0.13573825 prediction 0.444245606373906 Functional Loss - C5orf52 ENSG00000187658 CDS Human protein_coding chr5:157106936 chr5:157106938 synonymous SNV . 0 23 hm5C_associated_SNPs_80385 0 0 0 0 1 C5orf52 chr5:157106849 3'AG 157106849 Downstream 90bp
chr15 40700156 40700156 1 + G A STAD 40700153 + 40700133 40700173 41 GGCAGGAATTTTGGAAGCAGCTGGGGAACCTGGGCGTATTG GGCAGGAATTTTGGAAGCAGCTGAGGAACCTGGGCGTATTG < 41bp 0.79505174913744 0.57292900265202 0.8983271 0.8904258 prediction 0.444245492970839 Functional Loss - IVD ENSG00000128928 CDS Human protein_coding chr15:40700153 chr15:40700156 nonsynonymous SNV 0.938 5 24 hm5C_associated_SNPs_80386 0 0 1 0 2 IVD chr15:40700138 3'AG 40700138 Downstream 19bp
chr15 40700156 40700156 1 + G A STAD 40700153 + 40700133 40700173 41 GGCAGGAATTTTGGAAGCAGCTGGGGAACCTGGGCGTATTG GGCAGGAATTTTGGAAGCAGCTGAGGAACCTGGGCGTATTG < 41bp 0.79505174913744 0.57292900265202 0.8983271 0.8904258 prediction 0.444245492970839 Functional Loss - IVD ENSG00000128928 CDS Human protein_coding chr15:40700153 chr15:40700156 nonsynonymous SNV 0.938 5 24 hm5C_associated_SNPs_80386 0 0 1 0 2 IVD chr15:40700189 5'GT 40700189 Upstream 34bp
chr12 8245509 8245509 1 + T C STAD 8245508 + 8245488 8245528 41 AGGTGCTTCTAAGCCCAGGACTGCAAGGGGTGGGGGTCTGA AGGTGCTTCTAAGCCCAGGACCGCAAGGGGTGGGGGTCTGA < 41bp 0.840253462708753 0.618134337711595 0.33777016 0.23311237 prediction 0.444238249994315 Functional Loss - NECAP1 ENSG00000089818 CDS Human protein_coding chr12:8245508 chr12:8245509 synonymous SNV . 0 22 hm5C_associated_SNPs_80387 0 0 1 0 1 NECAP1 chr12:8245468 3'AG 8245468 Downstream 42bp
chr1 32677737 32677737 1 + G T UCEC 32677735 + 32677715 32677755 41 AGCTGTCCCAGGCTGCCAGCCAGGACTGGGAAACTGTGTTG AGCTGTCCCAGGCTGCCAGCCATGACTGGGAAACTGTGTTG < 41bp 0.9076644231747 0.685553307215333 0.32166746 0.038742274 prediction 0.444222231918732 Functional Loss - DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32677735 chr1:32677737 nonsynonymous SNV 0.987 1 23 hm5C_associated_SNPs_80394 0 0 0 0 1 DCDC2B chr1:32677802 5'GT 32677802 Upstream 66bp
chr13 31495738 31495738 1 + G A SKCM 31495735 + 31495715 31495755 41 AGTGAAGAATTTCTTCCCCCCAGGAAATGAAGTGGTTAATG AGTGAAGAATTTCTTCCCCCCAGAAAATGAAGTGGTTAATG < 41bp 0.744321932616943 0.522218640137602 0.7937821 0.5600963 prediction 0.444206584958681 Functional Loss - MEDAG ENSG00000102802 CDS Human protein_coding chr13:31495735 chr13:31495738 nonsynonymous SNV 0.841 1 24 hm5C_associated_SNPs_80396 0 0 0 0 1 MEDAG chr13:31495698 3'AG 31495698 Downstream 41bp
chr10 82187220 82187220 1 + G A LUSC 82187217 + 82187197 82187237 41 TGGAAGGAGAAGGCTTCATCCTTGGGGGAGTTTTCGTGGTG TGGAAGGAGAAGGCTTCATCCTTAGGGGAGTTTTCGTGGTG < 41bp 0.785988675014521 0.563894964319992 0.08274475 0.029358566 prediction 0.444187421389058 Functional Loss - FAM213A ENSG00000122378 CDS Human protein_coding chr10:82187217 chr10:82187220 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_80398 0 0 1 0 1 FAM213A chr10:82187252 5'GT 82187252 Upstream 33bp
chr6 43488713 43488713 1 + C T LUAD 43488710 + 43488690 43488730 41 GCCAACCCCCGGCTGGATACCTTCAGCAGAGAAATCTTCCG GCCAACCCCCGGCTGGATACCTTTAGCAGAGAAATCTTCCG < 41bp 0.734424613824885 0.51233607704941 0.07499468 0.030520499 prediction 0.444177073550949 Functional Loss - POLR1C ENSG00000171453 CDS Human protein_coding chr6:43488710 chr6:43488713 synonymous SNV . 0 24 hm5C_associated_SNPs_80400 0 0 1 0 2 POLR1C chr6:43488670 3'AG 43488670 Downstream 44bp
chr6 43488713 43488713 1 + C T LUAD 43488710 + 43488690 43488730 41 GCCAACCCCCGGCTGGATACCTTCAGCAGAGAAATCTTCCG GCCAACCCCCGGCTGGATACCTTTAGCAGAGAAATCTTCCG < 41bp 0.734424613824885 0.51233607704941 0.07499468 0.030520499 prediction 0.444177073550949 Functional Loss - POLR1C ENSG00000171453 CDS Human protein_coding chr6:43488710 chr6:43488713 synonymous SNV . 0 24 hm5C_associated_SNPs_80400 0 0 1 0 2 POLR1C chr6:43488786 5'GT 43488786 Upstream 74bp
chr19 7734784 7734784 1 + G A GBM 7734781 + 7734761 7734801 41 GGGACCTGGCTACTTGCCCCCGAGGTGAGTGCAGGAGACTG GGGACCTGGCTACTTGCCCCCGAAGTGAGTGCAGGAGACTG < 41bp 0.781424526161753 0.559339326899464 0.9259099 0.8406912 prediction 0.444170398524577 Functional Loss - RETN ENSG00000104918 CDS Human protein_coding chr19:7734781 chr19:7734784 nonsynonymous SNV 0.121 0 24 hm5C_associated_SNPs_80402 0 0 0 0 2 RETN chr19:7734707 3'AG 7734707 Downstream 78bp
chr19 7734784 7734784 1 + G A GBM 7734781 + 7734761 7734801 41 GGGACCTGGCTACTTGCCCCCGAGGTGAGTGCAGGAGACTG GGGACCTGGCTACTTGCCCCCGAAGTGAGTGCAGGAGACTG < 41bp 0.781424526161753 0.559339326899464 0.9259099 0.8406912 prediction 0.444170398524577 Functional Loss - RETN ENSG00000104918 CDS Human protein_coding chr19:7734781 chr19:7734784 nonsynonymous SNV 0.121 0 24 hm5C_associated_SNPs_80402 0 0 0 0 2 RETN chr19:7734784 5'GT 7734784 Upstream 1bp
chr1 152856935 152856935 1 + G T UCEC 152856933 + 152856913 152856953 41 AAAACACAGTAAATGCTGCCCAGCAAAAGGCAATCAATGCT AAAACACAGTAAATGCTGCCCATCAAAAGGCAATCAATGCT < 41bp 0.722084259715396 0.393852494238601 0.12792772 0.05261424 prediction 0.444168519430792 Functional Loss - SMCP ENSG00000163206 CDS Human protein_coding chr1:152856933 chr1:152856935 nonsynonymous SNV 0.093 0 23 hm5C_associated_SNPs_80404 0 0 0 0 1 SMCP chr1:152856879 3'AG 152856879 Downstream 57bp
chr2 47703631 47703631 1 + C T COAD 47703629 + 47703609 47703649 41 CATTGTGGACTGCATCTTAGCCCGAGTAGGGGCTGGTGACA CATTGTGGACTGCATCTTAGCCTGAGTAGGGGCTGGTGACA < 41bp 0.722075153371679 0.424572100859235 0.12221694 0.11942962 prediction 0.444150306743358 Functional Loss - MSH2 ENSG00000095002 CDS Human protein_coding chr2:47703629 chr2:47703631 stopgain 0.898 1 23 hm5C_associated_SNPs_80412 3 0 1 0 1 MSH2 chr2:47703710 5'GT 47703710 Upstream 80bp
chr9 132637007 132637007 1 + G A BLCA 132637004 + 132636984 132637024 41 ATCACCACCTACGACCTCCTCTCGGTCATCTGCCACCACGG ATCACCACCTACGACCTCCTCTCAGTCATCTGCCACCACGG < 41bp 0.722072686923327 0.465492168167668 0.28730577 0.056670934 prediction 0.444145373846654 Functional Loss - USP20 ENSG00000136878 CDS Human protein_coding chr9:132637004 chr9:132637007 synonymous SNV . 0 24 hm5C_associated_SNPs_80413 0 0 1 0 1 USP20 chr9:132637035 5'GT 132637035 Upstream 29bp
chr9 132637006 132637006 1 + C T BLCA 132637004 + 132636984 132637024 41 ATCACCACCTACGACCTCCTCTCGGTCATCTGCCACCACGG ATCACCACCTACGACCTCCTCTTGGTCATCTGCCACCACGG < 41bp 0.722072686923327 0.448970917953877 0.28730577 0.10404459 prediction 0.444145373846654 Functional Loss - USP20 ENSG00000136878 CDS Human protein_coding chr9:132637004 chr9:132637006 nonsynonymous SNV 0.765 2 23 hm5C_associated_SNPs_80414 0 0 1 0 1 USP20 chr9:132637035 5'GT 132637035 Upstream 30bp
chr16 85689517 85689517 1 + C T BLCA 85689515 + 85689495 85689535 41 GAGCGCATGTCTGGCCTCAGCGCGGAGAGGTAAGTGCGTCT GAGCGCATGTCTGGCCTCAGCGTGGAGAGGTAAGTGCGTCT < 41bp 0.809015557367227 0.586943073663896 0.8798058 0.8431028 prediction 0.444144967406662 Functional Loss - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85689515 chr16:85689517 nonsynonymous SNV 0.079 2 23 hm5C_associated_SNPs_80415 0 0 1 0 1 GSE1 chr16:85689523 5'GT 85689523 Upstream 7bp
chr20 44641949 44641949 1 + G A STAD 44641946 + 44641926 44641966 41 ACCACCACCACACCGCAGCCCACGGCTCCCCCGACGGTCTG ACCACCACCACACCGCAGCCCACAGCTCCCCCGACGGTCTG < 41bp 0.796566358968824 0.574497840176649 0.20739013 0.082049966 prediction 0.44413703758435 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44641946 chr20:44641949 synonymous SNV . 0 24 hm5C_associated_SNPs_80416 0 0 0 0 1 MMP9 chr20:44641894 3'AG 44641894 Downstream 56bp
chr11 31653923 31653923 1 + A C rs34804357 31653919 + 31653899 31653939 41 CTGAGAACCTCTCTTTCAGCCTGCATCATCACAATGCCAAC CTGAGAACCTCTCTTTCAGCCTGCCTCATCACAATGCCAAC < 41bp 0.722065297572254 0.296640937111461 0.043340683 0.020877242 prediction 0.444130595144507 Functional Loss - ELP4 ENSG00000109911 CDS Human protein_coding chr11:31653919 chr11:31653923 nonsynonymous SNV 0.993 0 25 hm5C_associated_SNPs_80417 0 0 0 0 1 ELP4 chr11:31653952 5'GT 31653952 Upstream 30bp
chr19 7976212 7976212 1 + G A DLBC 7976209 + 7976189 7976229 41 GACGTATGGAGCCTGGGCATCTCGTTGGTGAGTTGGGGCCC GACGTATGGAGCCTGGGCATCTCATTGGTGAGTTGGGGCCC < 41bp 0.78258123255151 0.560519729238254 0.23640326 0.25192225 prediction 0.444123006626513 Functional Loss - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7976209 chr19:7976212 synonymous SNV . 0 24 hm5C_associated_SNPs_80420 0 0 1 0 2 MAP2K7 chr19:7976135 3'AG 7976135 Downstream 78bp
chr19 7976212 7976212 1 + G A DLBC 7976209 + 7976189 7976229 41 GACGTATGGAGCCTGGGCATCTCGTTGGTGAGTTGGGGCCC GACGTATGGAGCCTGGGCATCTCATTGGTGAGTTGGGGCCC < 41bp 0.78258123255151 0.560519729238254 0.23640326 0.25192225 prediction 0.444123006626513 Functional Loss - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7976209 chr19:7976212 synonymous SNV . 0 24 hm5C_associated_SNPs_80420 0 0 1 0 2 MAP2K7 chr19:7976215 5'GT 7976215 Upstream 4bp
chr11 10432354 10432354 1 + G C rs568283134 10432350 + 10432330 10432370 41 TCTTGGACATTCTGGAGTCCCTGGGGGAAAGGGAAGTCTGA TCTTGGACATTCTGGAGTCCCTGGCGGAAAGGGAAGTCTGA < 41bp 0.722057651525746 0.435798459311849 0.8527761 0.4781176 prediction 0.444115303051492 Functional Loss - CAND1.11 ENSG00000133805 intronic Human protein_coding chr11:10432350 chr11:10432354 . . 0 25 hm5C_associated_SNPs_80422 0 0 0 0 1 CAND1.11 chr11:10432304 3'AG 10432304 Downstream 51bp
chr10 72633155 72633155 1 + G A CESC 72633152 + 72633132 72633172 41 TCATTGGTGTTGTATAGTGACAAGAAGTACAGGAACTATCA TCATTGGTGTTGTATAGTGACAAAAAGTACAGGAACTATCA < 41bp 0.722054977228897 0.492402599226582 0.17131251 0.045170248 prediction 0.444109954457794 Functional Loss - SGPL1 ENSG00000166224 CDS Human protein_coding chr10:72633152 chr10:72633155 synonymous SNV . 0 24 hm5C_associated_SNPs_80426 0 0 1 1 1 SGPL1 chr10:72633108 3'AG 72633108 Downstream 48bp
chrX 140995939 140995939 1 + C T COAD 140995937 + 140995917 140995957 41 TGAAAAGGTGGACGAGTTGGCGCGGTTTCTTCTCCTCAAAT TGAAAAGGTGGACGAGTTGGCGTGGTTTCTTCTCCTCAAAT < 41bp 0.758410033488814 0.536359210786981 0.34155133 0.33470714 prediction 0.444101645403666 Functional Loss - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140995937 chrX:140995939 nonsynonymous SNV 0.133 2 23 hm5C_associated_SNPs_80429 0 0 0 0 1 MAGEC1 chrX:140995876 3'AG 140995876 Downstream 64bp
chr1 207642539 207642539 1 + G T LUSC 207642536 + 207642516 207642556 41 TTCTAGTCGGTGTGTAATTGCTGGACAGGGAGTTGCTTGGA TTCTAGTCGGTGTGTAATTGCTGTACAGGGAGTTGCTTGGA < 41bp 0.930260339931444 0.70821007619863 0.31549144 0.15680507 prediction 0.444100527465628 Functional Loss - CR2 ENSG00000117322 CDS Human protein_coding chr1:207642536 chr1:207642539 nonsynonymous SNV 0.302 1 24 hm5C_associated_SNPs_80430 0 0 0 0 2 CR2 chr1:207642495 3'AG 207642495 Downstream 45bp
chr1 207642539 207642539 1 + G T LUSC 207642536 + 207642516 207642556 41 TTCTAGTCGGTGTGTAATTGCTGGACAGGGAGTTGCTTGGA TTCTAGTCGGTGTGTAATTGCTGTACAGGGAGTTGCTTGGA < 41bp 0.930260339931444 0.70821007619863 0.31549144 0.15680507 prediction 0.444100527465628 Functional Loss - CR2 ENSG00000117322 CDS Human protein_coding chr1:207642536 chr1:207642539 nonsynonymous SNV 0.302 1 24 hm5C_associated_SNPs_80430 0 0 0 0 2 CR2 chr1:207642577 5'GT 207642577 Upstream 39bp
chr9 126125371 126125371 1 + G A STAD 126125368 + 126125348 126125388 41 TCCAGGGCCCACGCTGCGAGCTGGACATCGATGAGTGTGCA TCCAGGGCCCACGCTGCGAGCTGAACATCGATGAGTGTGCA < 41bp 0.787428544012396 0.565387782092192 0.3290044 0.39420122 prediction 0.444081523840408 Functional Loss - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126125368 chr9:126125371 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_80435 0 0 0 0 1 CRB2 chr9:126125467 5'GT 126125467 Upstream 97bp
chr10 101716582 101716582 1 + G A SKCM 101716579 + 101716559 101716599 41 ACCATTAACAATGCAGTCATCTTGATTTCCAGAACTTACTG ACCATTAACAATGCAGTCATCTTAATTTCCAGAACTTACTG < 41bp 0.724662336665145 0.502623627404752 0.15304494 0.34799945 prediction 0.444077418520785 Functional Loss - DNMBP ENSG00000107554 CDS Human protein_coding chr10:101716579 chr10:101716582 stopgain 0.002 0 24 hm5C_associated_SNPs_80437 0 0 0 0 1 DNMBP chr10:101716546 3'AG 101716546 Downstream 37bp
chr8 120977508 120977508 1 + G A GBM 120977505 + 120977485 120977525 41 GAAAACACACTCCTGCAGCCCAGGGAGGAGGAAGGGGTCAA GAAAACACACTCCTGCAGCCCAGAGAGGAGGAAGGGGTCAA < 41bp 0.77798529255639 0.555947386111181 0.5461289 0.29287547 prediction 0.444075812890419 Functional Loss - DEPTOR ENSG00000155792 CDS Human protein_coding chr8:120977505 chr8:120977508 synonymous SNV . 0 24 hm5C_associated_SNPs_80438 0 0 0 0 1 DEPTOR chr8:120977472 3'AG 120977472 Downstream 37bp
chr1 150477145 150477145 1 + C T LUAD 150477142 + 150477122 150477162 41 TGGAGCGTCCAGTCCTCATTCACCGAGCAGTGCTCGGTTCT TGGAGCGTCCAGTCCTCATTCACTGAGCAGTGCTCGGTTCT < 41bp 0.733077536325264 0.511040006668613 0.4971736 0.4006113 prediction 0.444075059313301 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150477142 chr1:150477145 stopgain 0.994 1 24 hm5C_associated_SNPs_80439 1 0 1 0 2 TARS2 chr1:150477108 3'AG 150477108 Downstream 38bp
chr1 150477145 150477145 1 + C T LUAD 150477142 + 150477122 150477162 41 TGGAGCGTCCAGTCCTCATTCACCGAGCAGTGCTCGGTTCT TGGAGCGTCCAGTCCTCATTCACTGAGCAGTGCTCGGTTCT < 41bp 0.733077536325264 0.511040006668613 0.4971736 0.4006113 prediction 0.444075059313301 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150477142 chr1:150477145 stopgain 0.994 1 24 hm5C_associated_SNPs_80439 1 0 1 0 2 TARS2 chr1:150477209 5'GT 150477209 Upstream 65bp
chr16 3526287 3526287 1 + C T rs543443643 3526285 + 3526265 3526305 41 TCAGCCTGCGCCTCCTCTGCCACGATGACATAGACACTGTG TCAGCCTGCGCCTCCTCTGCCATGATGACATAGACACTGTG < 41bp 0.834913467535333 0.612880401158232 0.41613632 0.3616226 prediction 0.444066132754201 Functional Loss - NAA60 ENSG00000122390;ENSG00000262621 CDS Human protein_coding chr16:3526285 chr16:3526287 synonymous SNV . 0 23 hm5C_associated_SNPs_80442 0 0 1 3 2 NAA60 chr16:3526222 3'AG 3526222 Downstream 66bp
chr16 3526287 3526287 1 + C T rs543443643 3526285 + 3526265 3526305 41 TCAGCCTGCGCCTCCTCTGCCACGATGACATAGACACTGTG TCAGCCTGCGCCTCCTCTGCCATGATGACATAGACACTGTG < 41bp 0.834913467535333 0.612880401158232 0.41613632 0.3616226 prediction 0.444066132754201 Functional Loss - NAA60 ENSG00000122390;ENSG00000262621 CDS Human other chr16:3526285 chr16:3526287 synonymous SNV . 0 23 hm5C_associated_SNPs_80442 0 0 1 3 2 NAA60 chr16:3526337 5'GT 3526337 Upstream 51bp
chr12 7015029 7015029 1 + G A UCEC 7015026 + 7015006 7015046 41 CAGTGGCTGCCCACCCCCCTCACGGAGGACATGATGAAGGA CAGTGGCTGCCCACCCCCCTCACAGAGGACATGATGAAGGA < 41bp 0.780509785936518 0.558479651703373 0.34224558 0.10170293 prediction 0.444060268466291 Functional Loss - LRRC23 ENSG00000010626 CDS Human protein_coding chr12:7015026 chr12:7015029 synonymous SNV . 0 24 hm5C_associated_SNPs_80444 0 0 1 0 2 LRRC23 chr12:7015009 3'AG 7015009 Downstream 21bp
chr12 7015029 7015029 1 + G A UCEC 7015026 + 7015006 7015046 41 CAGTGGCTGCCCACCCCCCTCACGGAGGACATGATGAAGGA CAGTGGCTGCCCACCCCCCTCACAGAGGACATGATGAAGGA < 41bp 0.780509785936518 0.558479651703373 0.34224558 0.10170293 prediction 0.444060268466291 Functional Loss - LRRC23 ENSG00000010626 CDS Human protein_coding chr12:7015026 chr12:7015029 synonymous SNV . 0 24 hm5C_associated_SNPs_80444 0 0 1 0 2 LRRC23 chr12:7015118 5'GT 7015118 Upstream 90bp
chr15 75185540 75185540 1 + G A LUAD 75185537 + 75185517 75185557 41 GCAACACACCTGAAGCAGACCATGAGCCATGACTCCCAGGC GCAACACACCTGAAGCAGACCATAAGCCATGACTCCCAGGC < 41bp 0.722024379121532 0.477848584490017 0.12451267 0.10365084 prediction 0.444048758243063 Functional Loss - MPI ENSG00000178802 CDS Human protein_coding chr15:75185537 chr15:75185540 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_80448 0 0 1 0 1 MPI chr15:75185479 3'AG 75185479 Downstream 62bp
chr20 60963388 60963388 1 + C T BRCA 60963386 + 60963366 60963406 41 GTGAGTCAGATGATTCCATTCTCCGATTGGCCAAGGCCGAT GTGAGTCAGATGATTCCATTCTTCGATTGGCCAAGGCCGAT < 41bp 0.722020721514729 0.473930351350377 0.112280935 0.061510235 prediction 0.444041443029458 Functional Loss - RPS21 ENSG00000171858 CDS Human protein_coding chr20:60963386 chr20:60963388 synonymous SNV . 0 23 hm5C_associated_SNPs_80449 0 0 1 1 2 RPS21 chr20:60963365 3'AG 60963365 Downstream 24bp
chr20 60963388 60963388 1 + C T BRCA 60963386 + 60963366 60963406 41 GTGAGTCAGATGATTCCATTCTCCGATTGGCCAAGGCCGAT GTGAGTCAGATGATTCCATTCTTCGATTGGCCAAGGCCGAT < 41bp 0.722020721514729 0.473930351350377 0.112280935 0.061510235 prediction 0.444041443029458 Functional Loss - RPS21 ENSG00000171858 CDS Human protein_coding chr20:60963386 chr20:60963388 synonymous SNV . 0 23 hm5C_associated_SNPs_80449 0 0 1 1 2 RPS21 chr20:60963420 5'GT 60963420 Upstream 33bp
chr7 100607859 100607859 1 - C T PRAD 100607862 - 100607842 100607882 41 GGCAGCTGTTCGCATCCTGGCTGGCGTTCTGGAGCCCCTCC GGCAGCTGTTCGCATCCTGGCTGACGTTCTGGAGCCCCTCC < 41bp 0.722019964487353 0.467731430338088 0.36504045 0.06787944 prediction 0.444039928974705 Functional Loss - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100607862 chr7:100607859 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_80450 0 0 0 0 1 MUC3A chr7:100607771 5'GT 100607771 Upstream 89bp
chr17 7535245 7535245 1 + G C STAD 7535241 + 7535221 7535261 41 CCTGGGCCTTCTCTTTGGACCTGGGACTCAAGCAGGCAGCA CCTGGGCCTTCTCTTTGGACCTGGCACTCAAGCAGGCAGCA < 41bp 0.837040329347216 0.615021796017741 0.42666787 0.2678389 prediction 0.44403706665895 Functional Loss - SHBG ENSG00000129214 CDS Human protein_coding chr17:7535241 chr17:7535245 nonsynonymous SNV 0.617 0 25 hm5C_associated_SNPs_80452 0 0 0 0 2 SHBG chr17:7535197 3'AG 7535197 Downstream 49bp
chr17 7535245 7535245 1 + G C STAD 7535241 + 7535221 7535261 41 CCTGGGCCTTCTCTTTGGACCTGGGACTCAAGCAGGCAGCA CCTGGGCCTTCTCTTTGGACCTGGCACTCAAGCAGGCAGCA < 41bp 0.837040329347216 0.615021796017741 0.42666787 0.2678389 prediction 0.44403706665895 Functional Loss - SHBG ENSG00000129214 CDS Human protein_coding chr17:7535241 chr17:7535245 nonsynonymous SNV 0.617 0 25 hm5C_associated_SNPs_80452 0 0 0 0 2 SHBG chr17:7535333 5'GT 7535333 Upstream 89bp
chr3 42728181 42728181 1 + G A SKCM 42728178 + 42728158 42728198 41 AACCACGTCAGCCTGGTTACCAAGGAGAACCAGGTCTTCGT AACCACGTCAGCCTGGTTACCAAAGAGAACCAGGTCTTCGT < 41bp 0.760417159380419 0.538399241424096 0.891589 0.48859498 prediction 0.444035835912646 Functional Loss - KLHL40 ENSG00000157119 CDS Human protein_coding chr3:42728178 chr3:42728181 synonymous SNV . 0 24 hm5C_associated_SNPs_80453 0 0 0 0 1 KLHL40 chr3:42728262 5'GT 42728262 Upstream 82bp
chr10 26500794 26500794 1 + G A UCEC 26500791 + 26500771 26500811 41 GGTGCTGGGCGGCGGAGAGCCCCGAGAAGGAGGAGGAGAGA GGTGCTGGGCGGCGGAGAGCCCCAAGAAGGAGGAGGAGAGA < 41bp 0.723214406692792 0.501197400257339 0.44805595 0.19260487 prediction 0.444034012870907 Functional Loss - MYO3A ENSG00000095777 CDS Human protein_coding chr10:26500791 chr10:26500794 nonsynonymous SNV 0.016 0 24 hm5C_associated_SNPs_80454 0 0 0 0 1 MYO3A chr10:26500772 3'AG 26500772 Downstream 23bp
chr19 18684198 18684198 1 + A T STAD 18684194 + 18684174 18684214 41 ACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGG ACCATTGAGAATGTCAAAGCCAAATTTCAAGACAAGGAGGG < 41bp 0.722015392000912 0.388782483231677 0.29184067 0.07242334 prediction 0.444030784001823 Functional Loss - UBA52 ENSG00000221983 CDS Human protein_coding chr19:18684194 chr19:18684198 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_80455 0 0 1 0 1 UBA52 chr19:18684103 3'AG 18684103 Downstream 96bp
chr5 78416283 78416283 1 + G A LUAD 78416280 + 78416260 78416300 41 ACACCTTCATACCTTAGCTGCAAGAGTGAAACTGAAGTCAA ACACCTTCATACCTTAGCTGCAAAAGTGAAACTGAAGTCAA < 41bp 0.722015133401886 0.487568357614463 0.4800734 0.42901695 prediction 0.444030266803772 Functional Loss - BHMT ENSG00000145692 CDS Human protein_coding chr5:78416280 chr5:78416283 synonymous SNV . 0 24 hm5C_associated_SNPs_80456 0 0 0 0 1 BHMT chr5:78416364 5'GT 78416364 Upstream 82bp
chr16 12136854 12136854 1 + C T rs535962563 12136852 + 12136832 12136872 41 CCTCAGACGTGGGCCGGGGTCGCGCCTGGCTGCGCTGTGCC CCTCAGACGTGGGCCGGGGTCGTGCCTGGCTGCGCTGTGCC < 41bp 0.722013592400487 0.459327891106644 0.47306553 0.3536815 prediction 0.444027184800974 Functional Loss - SNX29 ENSG00000048471 CDS Human protein_coding chr16:12136852 chr16:12136854 synonymous SNV . 0 23 hm5C_associated_SNPs_80458 0 0 1 0 1 SNX29 chr16:12136934 5'GT 12136934 Upstream 81bp
chr5 23524483 23524483 1 + G A SKCM 23524480 + 23524460 23524500 41 GGGATGATGAAGAGCAGAACCTGGTGGCCTTCCAGTACCAC GGGATGATGAAGAGCAGAACCTGATGGCCTTCCAGTACCAC < 41bp 0.722011311260764 0.483942019853554 0.16555122 0.14337888 prediction 0.444022622521528 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23524480 chr5:23524483 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_80460 0 0 0 0 1 PRDM9 chr5:23524443 3'AG 23524443 Downstream 41bp
chr9 100139087 100139087 1 + G A SKCM 100139084 + 100139064 100139104 41 AGGAGGAGCTAAAGAGGATCCAGGATGACTGTACATCTCAG AGGAGGAGCTAAAGAGGATCCAGAATGACTGTACATCTCAG < 41bp 0.743761925173639 0.521753101812277 0.7883427 0.2494548 prediction 0.444017646722724 Functional Loss - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100139084 chr9:100139087 nonsynonymous SNV 0.797 0 24 hm5C_associated_SNPs_80463 0 0 0 0 1 CCDC180 chr9:100139045 3'AG 100139045 Downstream 43bp
chr10 71695113 71695113 1 + G T LUSC 71695110 + 71695090 71695130 41 CCCCTTTGGCTTTTAGGTTCCTGGGCTGCCAGGGCCAGAGG CCCCTTTGGCTTTTAGGTTCCTGTGCTGCCAGGGCCAGAGG < 41bp 0.722006867528753 0.344109420944309 0.41319782 0.051066607 prediction 0.444013735057507 Functional Loss - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71695110 chr10:71695113 nonsynonymous SNV 0.980 5 24 hm5C_associated_SNPs_80465 0 0 0 0 2 COL13A1 chr10:71695106 3'AG 71695106 Downstream 8bp
chr10 71695113 71695113 1 + G T LUSC 71695110 + 71695090 71695130 41 CCCCTTTGGCTTTTAGGTTCCTGGGCTGCCAGGGCCAGAGG CCCCTTTGGCTTTTAGGTTCCTGTGCTGCCAGGGCCAGAGG < 41bp 0.722006867528753 0.344109420944309 0.41319782 0.051066607 prediction 0.444013735057507 Functional Loss - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71695110 chr10:71695113 nonsynonymous SNV 0.980 5 24 hm5C_associated_SNPs_80465 0 0 0 0 2 COL13A1 chr10:71695147 5'GT 71695147 Upstream 35bp
chr10 71695112 71695112 1 + G T LUSC 71695110 + 71695090 71695130 41 CCCCTTTGGCTTTTAGGTTCCTGGGCTGCCAGGGCCAGAGG CCCCTTTGGCTTTTAGGTTCCTTGGCTGCCAGGGCCAGAGG < 41bp 0.722006867528753 0.384487082861 0.41319782 0.23122177 prediction 0.444013735057507 Functional Loss - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71695110 chr10:71695112 nonsynonymous SNV 0.992 5 23 hm5C_associated_SNPs_80466 0 0 0 0 2 COL13A1 chr10:71695106 3'AG 71695106 Downstream 7bp
chr10 71695112 71695112 1 + G T LUSC 71695110 + 71695090 71695130 41 CCCCTTTGGCTTTTAGGTTCCTGGGCTGCCAGGGCCAGAGG CCCCTTTGGCTTTTAGGTTCCTTGGCTGCCAGGGCCAGAGG < 41bp 0.722006867528753 0.384487082861 0.41319782 0.23122177 prediction 0.444013735057507 Functional Loss - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71695110 chr10:71695112 nonsynonymous SNV 0.992 5 23 hm5C_associated_SNPs_80466 0 0 0 0 2 COL13A1 chr10:71695147 5'GT 71695147 Upstream 36bp
chr3 44666593 44666593 1 + G C rs535412882 44666592 + 44666572 44666612 41 ATCTCCTAGCGGCCTGGCGCCGAGGCGGCGGTACGCAAGGC ATCTCCTAGCGGCCTGGCGCCCAGGCGGCGGTACGCAAGGC < 41bp 0.842589139854128 0.620583006309589 0.8726164 0.49446467 prediction 0.444012267089078 Functional Loss - ZNF197 ENSG00000236869 ncRNA_intronic Human antisense chr3:44666592 chr3:44666593 . . 0 22 hm5C_associated_SNPs_80467 0 0 1 0 1 ZNF197 chr3:44666635 5'GT 44666635 Upstream 43bp
chr9 91963111 91963111 1 + G A HNSC 91963108 + 91963088 91963128 41 GTGGTGGTGATGACCAGTTTCCCGAGCAGGCAGAGCTGTCA GTGGTGGTGATGACCAGTTTCCCAAGCAGGCAGAGCTGTCA < 41bp 0.778914928690592 0.55691111368163 0.37769833 0.15255713 prediction 0.444007630017923 Functional Loss - SECISBP2 ENSG00000187742 CDS Human protein_coding chr9:91963108 chr9:91963111 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_80469 0 0 1 0 1 SECISBP2 chr9:91963129 5'GT 91963129 Upstream 19bp
chr13 98009806 98009806 1 + C T STAD 98009804 + 98009784 98009824 41 GAAAAAAGCAATGGTACCAGCGCGGTCTTTAACCCCAGCGT GAAAAAAGCAATGGTACCAGCGTGGTCTTTAACCCCAGCGT < 41bp 0.824785482734088 0.602787007846977 0.7341294 0.612979 prediction 0.443996949774222 Functional Loss - MBNL2 ENSG00000139793 CDS Human protein_coding chr13:98009804 chr13:98009806 nonsynonymous SNV 0.963 1 23 hm5C_associated_SNPs_80472 0 0 1 0 2 MBNL2 chr13:98009736 3'AG 98009736 Downstream 71bp
chr13 98009806 98009806 1 + C T STAD 98009804 + 98009784 98009824 41 GAAAAAAGCAATGGTACCAGCGCGGTCTTTAACCCCAGCGT GAAAAAAGCAATGGTACCAGCGTGGTCTTTAACCCCAGCGT < 41bp 0.824785482734088 0.602787007846977 0.7341294 0.612979 prediction 0.443996949774222 Functional Loss - MBNL2 ENSG00000139793 CDS Human protein_coding chr13:98009804 chr13:98009806 nonsynonymous SNV 0.963 1 23 hm5C_associated_SNPs_80472 0 0 1 0 2 MBNL2 chr13:98009889 5'GT 98009889 Upstream 84bp
chr1 150054935 150054935 1 + G T UCEC 150054932 + 150054912 150054952 41 TTTCAGAGGTTGAGCAAGAACTGGCCTGTCAAAATGACCAT TTTCAGAGGTTGAGCAAGAACTGTCCTGTCAAAATGACCAT < 41bp 0.721997242793653 0.333724699256291 0.17510721 0.056100696 prediction 0.443994485587305 Functional Loss - VPS45 ENSG00000136631 CDS Human protein_coding chr1:150054932 chr1:150054935 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_80475 0 0 1 0 1 VPS45 chr1:150054967 5'GT 150054967 Upstream 33bp
chr16 68835623 68835623 1 + G A UCEC 68835620 + 68835600 68835640 41 AAAGGACAGCCTATTTTTCCCTCGACACCCGATTCAAAGTG AAAGGACAGCCTATTTTTCCCTCAACACCCGATTCAAAGTG < 41bp 0.790874676519466 0.568883942737847 0.37150538 0.06684056 prediction 0.443981467563239 Functional Loss - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68835620 chr16:68835623 nonsynonymous SNV 0.318 3 24 hm5C_associated_SNPs_80479 3 0 0 0 1 CDH1 chr16:68835573 3'AG 68835573 Downstream 51bp
chr10 1205891 1205891 1 + G T UCEC 1205888 + 1205868 1205908 41 ACATGAGGGATGAGGCAGCACAGGAATTGGCACAACCTGAA ACATGAGGGATGAGGCAGCACAGTAATTGGCACAACCTGAA < 41bp 0.909820373128105 0.687832786791268 0.7012973 0.43583703 prediction 0.443975172673674 Functional Loss - LINC00200 ENSG00000229205 ncRNA_exonic Human lincRNA chr10:1205888 chr10:1205891 . . 0 24 hm5C_associated_SNPs_80482 0 0 1 0 1 LINC00200 chr10:1205930 5'GT 1205930 Upstream 40bp
chr19 1042361 1042361 1 + G A UCEC 1042358 + 1042338 1042378 41 CTCCACTGGAACCACCCATGCTGGATGTCGCGGAGCTGCTG CTCCACTGGAACCACCCATGCTGAATGTCGCGGAGCTGCTG < 41bp 0.781254858600209 0.559269062665847 0.52735096 0.65488255 prediction 0.443971591868725 Functional Loss - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1042358 chr19:1042361 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_80485 0 0 1 0 2 ABCA7 chr19:1042314 3'AG 1042314 Downstream 48bp
chr19 1042361 1042361 1 + G A UCEC 1042358 + 1042338 1042378 41 CTCCACTGGAACCACCCATGCTGGATGTCGCGGAGCTGCTG CTCCACTGGAACCACCCATGCTGAATGTCGCGGAGCTGCTG < 41bp 0.781254858600209 0.559269062665847 0.52735096 0.65488255 prediction 0.443971591868725 Functional Loss - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1042358 chr19:1042361 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_80485 0 0 1 0 2 ABCA7 chr19:1042396 5'GT 1042396 Upstream 36bp
chr5 7873639 7873639 1 + G A LUSC 7873636 + 7873616 7873656 41 CTCACCTGCGGTATGGGTTACTGGGTAATGGACTCTCTCTT CTCACCTGCGGTATGGGTTACTGAGTAATGGACTCTCTCTT < 41bp 0.721983781249258 0.490523251912192 0.5717143 0.27173826 prediction 0.443967562498516 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7873636 chr5:7873639 nonsynonymous SNV 0.957 4 24 hm5C_associated_SNPs_80486 0 0 1 0 1 MTRR chr5:7873639 5'GT 7873639 Upstream 1bp
chr19 55106812 55106812 1 + G A SKCM 55106809 + 55106789 55106829 41 TACAGGTGCTATGCTTATGACTCGAACTCTCCCCATGTGTG TACAGGTGCTATGCTTATGACTCAAACTCTCCCCATGTGTG < 41bp 0.806443096384254 0.584464109631098 0.415541 0.11755687 prediction 0.443957973506312 Functional Loss - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55106809 chr19:55106812 synonymous SNV . 0 24 hm5C_associated_SNPs_80487 0 0 0 0 1 LILRA1 chr19:55106867 5'GT 55106867 Upstream 56bp
chr7 141315310 141315310 1 + G A OV 141315307 + 141315287 141315327 41 TTCCCATTGGATTTATCCCACTGGGAGAGACCAGTAGTTTG TTCCCATTGGATTTATCCCACTGAGAGAGACCAGTAGTTTG < 41bp 0.72197546888227 0.484051707629369 0.12381169 0.116805434 prediction 0.443950937764541 Functional Loss - AGK ENSG00000006530 CDS Human protein_coding chr7:141315307 chr7:141315310 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_80489 0 0 1 0 2 AGK chr7:141315271 3'AG 141315271 Downstream 40bp
chr7 141315310 141315310 1 + G A OV 141315307 + 141315287 141315327 41 TTCCCATTGGATTTATCCCACTGGGAGAGACCAGTAGTTTG TTCCCATTGGATTTATCCCACTGAGAGAGACCAGTAGTTTG < 41bp 0.72197546888227 0.484051707629369 0.12381169 0.116805434 prediction 0.443950937764541 Functional Loss - AGK ENSG00000006530 CDS Human protein_coding chr7:141315307 chr7:141315310 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_80489 0 0 1 0 2 AGK chr7:141315365 5'GT 141315365 Upstream 56bp
chr2 37458898 37458898 1 + G A rs72875762 37458895 + 37458875 37458915 41 GGGGCCGTTGTGTGCCGTGGCGCGCGCAGGTAAGCGTCAGT GGGGCCGTTGTGTGCCGTGGCGCACGCAGGTAAGCGTCAGT < 41bp 0.721973129181937 0.480534872468434 0.14575052 0.033151448 prediction 0.443946258363874 Functional Loss - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37458895 chr2:37458898 nonsynonymous SNV 0.006 2 24 hm5C_associated_SNPs_80490 1 0 1 0 1 NDUFAF7 chr2:37458903 5'GT 37458903 Upstream 6bp
chr6 42130728 42130728 1 + A C rs371934157 42130724 + 42130704 42130744 41 CATGCAAGGGGGTGAAGGCTCCACACTCGTCCCGGCCCCGG CATGCAAGGGGGTGAAGGCTCCACCCTCGTCCCGGCCCCGG < 41bp 0.72197175382207 0.329004294724102 0.09055418 0.13729247 prediction 0.44394350764414 Functional Loss - GUCA1A ENSG00000214732 CDS Human protein_coding chr6:42130724 chr6:42130728 unknown 0.000 0 25 hm5C_associated_SNPs_80492 0 0 0 0 1 GUCA1A chr6:42130658 3'AG 42130658 Downstream 71bp
chr3 129226579 129226579 1 + G A LUSC 129226576 + 129226556 129226596 41 AGCGTTTGGCAGAGCTGTACCATGGTTACCATGCCATCCAT AGCGTTTGGCAGAGCTGTACCATAGTTACCATGCCATCCAT < 41bp 0.721970054622198 0.486663822577526 0.311143 0.20468971 prediction 0.443940109244397 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129226576 chr3:129226579 nonsynonymous SNV 0.892 2 24 hm5C_associated_SNPs_80493 0 0 0 0 2 IFT122 chr3:129226508 3'AG 129226508 Downstream 72bp
chr3 129226579 129226579 1 + G A LUSC 129226576 + 129226556 129226596 41 AGCGTTTGGCAGAGCTGTACCATGGTTACCATGCCATCCAT AGCGTTTGGCAGAGCTGTACCATAGTTACCATGCCATCCAT < 41bp 0.721970054622198 0.486663822577526 0.311143 0.20468971 prediction 0.443940109244397 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129226576 chr3:129226579 nonsynonymous SNV 0.892 2 24 hm5C_associated_SNPs_80493 0 0 0 0 2 IFT122 chr3:129226511 3'AG 129226511 Downstream 69bp
chr12 129431890 129431890 1 + G T LUSC 129431888 + 129431868 129431908 41 TGCTTTGTGTTTCAGAGCCGCTGGGGTACGATTGATTGGAG TGCTTTGTGTTTCAGAGCCGCTTGGGTACGATTGATTGGAG < 41bp 0.721964280514271 0.369507703002844 0.46017885 0.11681858 prediction 0.443928561028541 Functional Loss - GLT1D1 ENSG00000151948 CDS Human protein_coding chr12:129431888 chr12:129431890 nonsynonymous SNV 0.065 4 23 hm5C_associated_SNPs_80499 0 0 0 2 1 GLT1D1 chr12:129431883 3'AG 129431883 Downstream 8bp
chr12 129431891 129431891 1 + G T THCA 129431888 + 129431868 129431908 41 TGCTTTGTGTTTCAGAGCCGCTGGGGTACGATTGATTGGAG TGCTTTGTGTTTCAGAGCCGCTGTGGTACGATTGATTGGAG < 41bp 0.721964280514271 0.325547470120931 0.46017885 0.11094585 prediction 0.443928561028541 Functional Loss - GLT1D1 ENSG00000151948 CDS Human protein_coding chr12:129431888 chr12:129431891 nonsynonymous SNV 0.084 4 24 hm5C_associated_SNPs_80500 0 0 0 2 1 GLT1D1 chr12:129431883 3'AG 129431883 Downstream 9bp
chr9 131246279 131246279 1 + G T LUAD 131246277 + 131246257 131246297 41 AGTCCATGCGTGGGCATTTGCAGGCACAGCTTCGGTCCAAA AGTCCATGCGTGGGCATTTGCATGCACAGCTTCGGTCCAAA < 41bp 0.721964153403874 0.383872598955949 0.685538 0.10069153 prediction 0.443928306807748 Functional Loss - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131246277 chr9:131246279 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_80501 0 0 1 0 1 ODF2 chr9:131246217 3'AG 131246217 Downstream 63bp
chr9 131246280 131246280 1 + G A UCEC 131246277 + 131246257 131246297 41 AGTCCATGCGTGGGCATTTGCAGGCACAGCTTCGGTCCAAA AGTCCATGCGTGGGCATTTGCAGACACAGCTTCGGTCCAAA < 41bp 0.721964153403874 0.492226146913996 0.685538 0.24795789 prediction 0.443928306807748 Functional Loss - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131246277 chr9:131246280 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_80502 0 0 1 0 1 ODF2 chr9:131246217 3'AG 131246217 Downstream 64bp
chr2 206659486 206659486 1 + G C LUAD 206659485 + 206659465 206659505 41 TTATGTATCGCAGATGAATACGAGGTGGACTGGAGCAATTC TTATGTATCGCAGATGAATACCAGGTGGACTGGAGCAATTC < 41bp 0.721963167573942 0.400292058160975 0.8956034 0.86863506 prediction 0.443926335147884 Functional Loss - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206659485 chr2:206659486 nonsynonymous SNV 0.627 1 22 hm5C_associated_SNPs_80503 0 0 1 0 1 NRP2 chr2:206659478 3'AG 206659478 Downstream 9bp
chr2 7154680 7154680 1 + G T UCEC 7154678 + 7154658 7154698 41 GCCCTAAACAGGGCCACCTACAGGAGAACGAGGCATGTGCA GCCCTAAACAGGGCCACCTACATGAGAACGAGGCATGTGCA < 41bp 0.908305865631787 0.68634445289416 0.9035434 0.42396054 prediction 0.443922825475253 Functional Loss - RNF144A ENSG00000151692 CDS Human protein_coding chr2:7154678 chr2:7154680 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_80504 0 0 1 0 1 RNF144A chr2:7154585 3'AG 7154585 Downstream 96bp
chr11 66297397 66297397 1 + C T UCEC 66297395 + 66297375 66297415 41 GAGCCCCCTGTCCACGACAGCCCGAGAGCCACTCAAGCTGC GAGCCCCCTGTCCACGACAGCCTGAGAGCCACTCAAGCTGC < 41bp 0.721959905393894 0.442266796769101 0.114981204 0.09821981 prediction 0.443919810787788 Functional Loss - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66297395 chr11:66297397 stopgain 0.084 0 23 hm5C_associated_SNPs_80505 0 0 0 0 1 BBS1 chr11:66297423 5'GT 66297423 Upstream 27bp
chr3 49212314 49212314 1 + G A COAD 49212311 + 49212291 49212331 41 GCTGAAGGCAGCGTCTTTAGCCTGGGTGGCCTGCAGCAGCC GCTGAAGGCAGCGTCTTTAGCCTAGGTGGCCTGCAGCAGCC < 41bp 0.721958229529557 0.47793826575121 0.8601085 0.55252737 prediction 0.443916459059114 Functional Loss - KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212311 chr3:49212314 synonymous SNV . 0 24 hm5C_associated_SNPs_80506 0 0 1 0 1 KLHDC8B chr3:49212399 5'GT 49212399 Upstream 86bp
chr2 71192107 71192107 1 + G A OV 71192104 + 71192084 71192124 41 CTAGGCCCCTACGAGAACCGCTCGGTGTTCGAGTCGCTGGA CTAGGCCCCTACGAGAACCGCTCAGTGTTCGAGTCGCTGGA < 41bp 0.721954393013862 0.469558230362529 0.31077152 0.19270474 prediction 0.443908786027724 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71192104 chr2:71192107 synonymous SNV . 0 24 hm5C_associated_SNPs_80509 0 0 0 0 1 ATP6V1B1 chr2:71192088 3'AG 71192088 Downstream 20bp
chr2 231266450 231266450 1 + C T UCEC 231266448 + 231266428 231266468 41 TCAAGAAAAGGCTGAATGAGCACGGTTACCCCCAAGTGGAG TCAAGAAAAGGCTGAATGAGCATGGTTACCCCCAAGTGGAG < 41bp 0.80607046214751 0.584118460164143 0.4142077 0.31711894 prediction 0.443904003966733 Functional Loss - SP140L ENSG00000185404 CDS Human protein_coding chr2:231266448 chr2:231266450 synonymous SNV . 0 23 hm5C_associated_SNPs_80511 0 0 0 0 2 SP140L chr2:231266379 3'AG 231266379 Downstream 72bp
chr2 231266450 231266450 1 + C T UCEC 231266448 + 231266428 231266468 41 TCAAGAAAAGGCTGAATGAGCACGGTTACCCCCAAGTGGAG TCAAGAAAAGGCTGAATGAGCATGGTTACCCCCAAGTGGAG < 41bp 0.80607046214751 0.584118460164143 0.4142077 0.31711894 prediction 0.443904003966733 Functional Loss - SP140L ENSG00000185404 CDS Human protein_coding chr2:231266448 chr2:231266450 synonymous SNV . 0 23 hm5C_associated_SNPs_80511 0 0 0 0 2 SP140L chr2:231266522 5'GT 231266522 Upstream 73bp
chr1 205034298 205034298 1 + G A COAD 205034295 + 205034275 205034315 41 CCCTACAGTGCCATGCCTCCCACGACCCCACCATGGACCTC CCCTACAGTGCCATGCCTCCCACAACCCCACCATGGACCTC < 41bp 0.777585362152787 0.555634997275005 0.0334208 0.019754082 prediction 0.443900729755566 Functional Loss - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205034295 chr1:205034298 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_80513 0 0 0 0 2 CNTN2 chr1:205034215 3'AG 205034215 Downstream 84bp
chr1 205034298 205034298 1 + G A COAD 205034295 + 205034275 205034315 41 CCCTACAGTGCCATGCCTCCCACGACCCCACCATGGACCTC CCCTACAGTGCCATGCCTCCCACAACCCCACCATGGACCTC < 41bp 0.777585362152787 0.555634997275005 0.0334208 0.019754082 prediction 0.443900729755566 Functional Loss - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205034295 chr1:205034298 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_80513 0 0 0 0 2 CNTN2 chr1:205034390 5'GT 205034390 Upstream 93bp
chr6 4892027 4892027 1 + G A rs143201617 4892024 + 4892004 4892044 41 CGGTGGAAAGGCTATGACAGCGAGGACGACACTTGGGAGCC CGGTGGAAAGGCTATGACAGCGAAGACGACACTTGGGAGCC < 41bp 0.721949384001832 0.48468366057721 0.75639045 0.4047913 prediction 0.443898768003664 Functional Loss - CDYL ENSG00000153046 CDS Human protein_coding chr6:4892024 chr6:4892027 synonymous SNV . 0 24 hm5C_associated_SNPs_80514 0 0 1 0 1 CDYL chr6:4891947 3'AG 4891947 Downstream 81bp
chr9 140777335 140777335 1 + G A SKCM 140777332 + 140777312 140777352 41 GGACTTCGTGGTCGTCCTCACAGGGTAGGCAAGCTGAGGCC GGACTTCGTGGTCGTCCTCACAGAGTAGGCAAGCTGAGGCC < 41bp 0.783246907299793 0.561297795499801 0.88870984 0.76912725 prediction 0.443898223599985 Functional Loss - CACNA1B ENSG00000148408 CDS Human protein_coding chr9:140777332 chr9:140777335 nonsynonymous SNV 0.971 5 24 hm5C_associated_SNPs_80515 0 0 0 0 1 CACNA1B chr9:140777335 3'AG 140777335 Downstream 1bp
chr4 71255455 71255455 1 + G T UCEC 71255453 + 71255433 71255473 41 TCCTCCTCAACCTTTTGGCCCAGGATTTGTTCCACCACCTC TCCTCCTCAACCTTTTGGCCCATGATTTGTTCCACCACCTC < 41bp 0.903847275139343 0.681902388299955 0.689503 0.28662884 prediction 0.443889773678777 Functional Loss - SMR3B ENSG00000171201 CDS Human protein_coding chr4:71255453 chr4:71255455 stopgain 0.017 0 23 hm5C_associated_SNPs_80519 0 0 0 0 1 SMR3B chr4:71255380 3'AG 71255380 Downstream 76bp
chr6 153073361 153073361 1 + A C LUSC 153073360 + 153073340 153073380 41 CTTGTGCTCCTGACTCTTCTCAGTGTGCTCTTCTCACAGAC CTTGTGCTCCTGACTCTTCTCCGTGTGCTCTTCTCACAGAC < 41bp 0.819860862502928 0.59791598443261 0.5969023 0.7672994 prediction 0.443889756140636 Functional Loss - VIP ENSG00000146469 CDS Human protein_coding chr6:153073360 chr6:153073361 nonsynonymous SNV 0.004 2 22 hm5C_associated_SNPs_80520 0 0 0 0 2 VIP chr6:153073303 3'AG 153073303 Downstream 59bp
chr6 153073361 153073361 1 + A C LUSC 153073360 + 153073340 153073380 41 CTTGTGCTCCTGACTCTTCTCAGTGTGCTCTTCTCACAGAC CTTGTGCTCCTGACTCTTCTCCGTGTGCTCTTCTCACAGAC < 41bp 0.819860862502928 0.59791598443261 0.5969023 0.7672994 prediction 0.443889756140636 Functional Loss - VIP ENSG00000146469 CDS Human protein_coding chr6:153073360 chr6:153073361 nonsynonymous SNV 0.004 2 22 hm5C_associated_SNPs_80520 0 0 0 0 2 VIP chr6:153073419 5'GT 153073419 Upstream 59bp
chr19 45157261 45157261 1 + G A SKCM 45157258 + 45157238 45157278 41 CCTGCGATGCTCGCAGCAACCCAGAGCCCACAGGCTATAAT CCTGCGATGCTCGCAGCAACCCAAAGCCCACAGGCTATAAT < 41bp 0.776833782665581 0.554894678263684 0.3674957 0.29920536 prediction 0.443878208803794 Functional Loss - PVR ENSG00000073008 CDS Human protein_coding chr19:45157258 chr19:45157261 nonsynonymous SNV 0.893 1 24 hm5C_associated_SNPs_80523 0 0 1 0 2 PVR chr19:45157169 3'AG 45157169 Downstream 93bp
chr19 45157261 45157261 1 + G A SKCM 45157258 + 45157238 45157278 41 CCTGCGATGCTCGCAGCAACCCAGAGCCCACAGGCTATAAT CCTGCGATGCTCGCAGCAACCCAAAGCCCACAGGCTATAAT < 41bp 0.776833782665581 0.554894678263684 0.3674957 0.29920536 prediction 0.443878208803794 Functional Loss - PVR ENSG00000073008 CDS Human protein_coding chr19:45157258 chr19:45157261 nonsynonymous SNV 0.893 1 24 hm5C_associated_SNPs_80523 0 0 1 0 2 PVR chr19:45157286 5'GT 45157286 Upstream 26bp
chr19 50204806 50204806 1 + C T STAD 50204804 + 50204784 50204824 41 GACGAGGACTTCGACTGGACCGCGGTCCTGGCGCAGGAATT GACGAGGACTTCGACTGGACCGTGGTCCTGGCGCAGGAATT < 41bp 0.812551493079273 0.590612732555113 0.31768215 0.3533809 prediction 0.443877521048321 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50204804 chr19:50204806 nonsynonymous SNV 0.030 1 23 hm5C_associated_SNPs_80524 0 0 0 0 2 CPT1C chr19:50204754 3'AG 50204754 Downstream 53bp
chr19 50204806 50204806 1 + C T STAD 50204804 + 50204784 50204824 41 GACGAGGACTTCGACTGGACCGCGGTCCTGGCGCAGGAATT GACGAGGACTTCGACTGGACCGTGGTCCTGGCGCAGGAATT < 41bp 0.812551493079273 0.590612732555113 0.31768215 0.3533809 prediction 0.443877521048321 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50204804 chr19:50204806 nonsynonymous SNV 0.030 1 23 hm5C_associated_SNPs_80524 0 0 0 0 2 CPT1C chr19:50204891 5'GT 50204891 Upstream 86bp
chr12 51797008 51797008 1 + G T UCEC 51797006 + 51796986 51797026 41 TCGCTACCGCCGGGGAGACCCAGGATACCTAAACTTTACTG TCGCTACCGCCGGGGAGACCCATGATACCTAAACTTTACTG < 41bp 0.721935581216331 0.411287588468899 0.91773975 0.73581684 prediction 0.443871162432661 Functional Loss - SLC4A8 ENSG00000050438 CDS Human protein_coding chr12:51797006 chr12:51797008 stopgain . 0 23 hm5C_associated_SNPs_80526 0 0 0 0 1 SLC4A8 chr12:51797073 5'GT 51797073 Upstream 66bp
chr11 17793278 17793278 1 + G A UCEC 17793275 + 17793255 17793295 41 CCACCTTCTGCCTGGAGACCCACGAGCGCTTCAACCCCATC CCACCTTCTGCCTGGAGACCCACAAGCGCTTCAACCCCATC < 41bp 0.721934573956917 0.482011091455672 0.30897707 0.1515936 prediction 0.443869147913834 Functional Loss - KCNC1 ENSG00000129159 CDS Human protein_coding chr11:17793275 chr11:17793278 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_80527 0 0 0 0 1 KCNC1 chr11:17793212 3'AG 17793212 Downstream 67bp
chr22 37322077 37322077 1 + G A HNSC 37322074 + 37322054 37322094 41 GACCTCAGTGATGACATGCCCTGGTCAGCCTGCCCCCATCC GACCTCAGTGATGACATGCCCTGATCAGCCTGCCCCCATCC < 41bp 0.721934371841682 0.463571513901851 0.42425907 0.12188503 prediction 0.443868743683364 Functional Loss - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37322074 chr22:37322077 stopgain 0.003 0 24 hm5C_associated_SNPs_80528 0 0 0 0 1 CSF2RB chr22:37322029 3'AG 37322029 Downstream 49bp
chr19 56206137 56206137 1 + G A rs11545669 56206134 + 56206114 56206154 41 AGAGGTGCCGGCCCGAAGCCCTGGGGCGTTTGACATGAGTG AGAGGTGCCGGCCCGAAGCCCTGAGGCGTTTGACATGAGTG < 41bp 0.798755421120484 0.576825511708917 0.5882266 0.34064496 prediction 0.443859818823134 Functional Loss - EPN1 ENSG00000063245 CDS Human protein_coding chr19:56206134 chr19:56206137 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_80529 0 0 1 0 1 EPN1 chr19:56206092 3'AG 56206092 Downstream 46bp
chr19 16319885 16319885 1 + G A UCEC 16319882 + 16319862 16319902 41 CAAGCTGGAAACAGGGGCCCCGCGGCCACCAGCCACCGTCA CAAGCTGGAAACAGGGGCCCCGCAGCCACCAGCCACCGTCA < 41bp 0.805428840761549 0.583502705919792 0.8983828 0.5104984 prediction 0.443852269683514 Functional Loss - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16319882 chr19:16319885 nonsynonymous SNV 0.623 2 24 hm5C_associated_SNPs_80531 0 0 1 0 1 AP1M1 chr19:16319841 3'AG 16319841 Downstream 45bp
chr11 34988343 34988343 1 + T C rs61760973 34988342 + 34988322 34988362 41 GATCCCACCAGTATCAACTCCTGGACAACCCAATGCAGTGG GATCCCACCAGTATCAACTCCCGGACAACCCAATGCAGTGG < 41bp 0.721923221920956 0.461773305053881 0.040320754 0.05539909 prediction 0.443846443841911 Functional Loss - PDHX ENSG00000110435 CDS Human protein_coding chr11:34988342 chr11:34988343 synonymous SNV . 0 22 hm5C_associated_SNPs_80533 2 0 1 0 1 PDHX chr11:34988361 5'GT 34988361 Upstream 19bp
chr16 2283475 2283475 1 + G C rs35508264 2283471 + 2283451 2283491 41 CAGGAGCTCCCCTGCTCCAGCGAGGGCAGCCGTGAGAACCT CAGGAGCTCCCCTGCTCCAGCGAGCGCAGCCGTGAGAACCT < 41bp 0.863728199845642 0.641806808644725 0.9267752 0.78253406 prediction 0.443842782401833 Functional Loss - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2283471 chr16:2283475 nonsynonymous SNV 0.042 0 25 hm5C_associated_SNPs_80534 0 0 1 0 1 E4F1 chr16:2283439 3'AG 2283439 Downstream 37bp
chr12 4461510 4461510 1 + G T LUSC 4461507 + 4461487 4461527 41 ATCAAAAAGAACAGTTTTCCCAAGGATCTCCAAGCAACTGT ATCAAAAAGAACAGTTTTCCCAATGATCTCCAAGCAACTGT < 41bp 0.721920480074696 0.334927512262444 0.20130786 0.06998661 prediction 0.443840960149392 Functional Loss - TIGAR ENSG00000078237 CDS Human protein_coding chr12:4461507 chr12:4461510 stopgain 0.467 0 24 hm5C_associated_SNPs_80535 0 0 1 0 1 TIGAR chr12:4461426 3'AG 4461426 Downstream 85bp
chr3 186392940 186392940 1 + G A COAD 186392937 + 186392917 186392957 41 GAAGCCTTGGACTTGGAAAGCCCGAAAAACCTTGTCATAAA GAAGCCTTGGACTTGGAAAGCCCAAAAAACCTTGTCATAAA < 41bp 0.735156660679458 0.513236821254789 0.08084595 0.06812465 prediction 0.443839678849336 Functional Loss - HRG ENSG00000113905 CDS Human protein_coding chr3:186392937 chr3:186392940 synonymous SNV . 0 24 hm5C_associated_SNPs_80536 0 0 0 0 2 HRG chr3:186392878 3'AG 186392878 Downstream 63bp
chr3 186392940 186392940 1 + G A COAD 186392937 + 186392917 186392957 41 GAAGCCTTGGACTTGGAAAGCCCGAAAAACCTTGTCATAAA GAAGCCTTGGACTTGGAAAGCCCAAAAAACCTTGTCATAAA < 41bp 0.735156660679458 0.513236821254789 0.08084595 0.06812465 prediction 0.443839678849336 Functional Loss - HRG ENSG00000113905 CDS Human protein_coding chr3:186392937 chr3:186392940 synonymous SNV . 0 24 hm5C_associated_SNPs_80536 0 0 0 0 2 HRG chr3:186392979 5'GT 186392979 Upstream 40bp
chr16 28596247 28596247 1 + G A UCEC 28596244 + 28596224 28596264 41 TTCCTTACAGGAAGAGCGTTCGCGGAGCGAACACAACTTAG TTCCTTACAGGAAGAGCGTTCGCAGAGCGAACACAACTTAG < 41bp 0.784846186738072 0.562927370607915 0.16106313 0.08221179 prediction 0.443837632260314 Functional Loss - SGF29 ENSG00000176476 CDS Human protein_coding chr16:28596244 chr16:28596247 nonsynonymous SNV 0.418 1 24 hm5C_associated_SNPs_80537 0 0 1 0 1 SGF29 chr16:28596234 3'AG 28596234 Downstream 14bp
chr3 125694485 125694485 1 + G T UCEC 125694483 + 125694463 125694503 41 AGTCGCTTTGTGTAACTGGGCAGAGCTAACACCTGAGCTGT AGTCGCTTTGTGTAACTGGGCATAGCTAACACCTGAGCTGT < 41bp 0.721911695394558 0.356020710078775 0.5131934 0.15550432 prediction 0.443823390789115 Functional Loss - ROPN1B ENSG00000114547 CDS Human protein_coding chr3:125694483 chr3:125694485 stopgain 0.387 0 23 hm5C_associated_SNPs_80541 0 0 0 0 1 ROPN1B chr3:125694523 5'GT 125694523 Upstream 39bp
chr9 114393962 114393962 1 + G C OV 114393961 + 114393941 114393981 41 CCGGAGACGAGGGCCCCGGGCGGACGCCGCAGAGCGCCGAG CCGGAGACGAGGGCCCCGGGCCGACGCCGCAGAGCGCCGAG < 41bp 0.721909963635352 0.44260982059365 0.6035654 0.10578644 prediction 0.443819927270703 Functional Loss - DNAJC25;DNAJC25-GNG10 ENSG00000059769;ENSG00000244115 CDS Human other chr9:114393961 chr9:114393962 nonsynonymous SNV 0.982 0 22 hm5C_associated_SNPs_80542 0 0 1 0 1 DNAJC25;DNAJC25-GNG10 chr9:114394023 5'GT 114394023 Upstream 62bp
chr1 107691410 107691410 1 + C T UCEC 107691408 + 107691388 107691428 41 CAAAATATCTGAAAGTGAAACTCGATCCTCCGGATATTACC CAAAATATCTGAAAGTGAAACTTGATCCTCCGGATATTACC < 41bp 0.72190865700754 0.439193051019509 0.4071405 0.083710164 prediction 0.443817314015081 Functional Loss - NTNG1 ENSG00000162631 CDS Human protein_coding chr1:107691408 chr1:107691410 synonymous SNV . 0 23 hm5C_associated_SNPs_80543 0 0 0 0 1 NTNG1 chr1:107691461 5'GT 107691461 Upstream 52bp
chr1 84650823 84650823 1 + G T LUAD 84650820 + 84650800 84650840 41 CATGGTTATGGAATATGTCCCTGGGGGTGAAATGTTTTCAC CATGGTTATGGAATATGTCCCTGTGGGTGAAATGTTTTCAC < 41bp 0.721905715700621 0.358767956888482 0.33051258 0.059182018 prediction 0.443811431401242 Functional Loss - PRKACB ENSG00000142875 CDS Human protein_coding chr1:84650820 chr1:84650823 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_80544 0 0 1 0 2 PRKACB chr1:84650783 3'AG 84650783 Downstream 41bp
chr1 84650823 84650823 1 + G T LUAD 84650820 + 84650800 84650840 41 CATGGTTATGGAATATGTCCCTGGGGGTGAAATGTTTTCAC CATGGTTATGGAATATGTCCCTGTGGGTGAAATGTTTTCAC < 41bp 0.721905715700621 0.358767956888482 0.33051258 0.059182018 prediction 0.443811431401242 Functional Loss - PRKACB ENSG00000142875 CDS Human protein_coding chr1:84650820 chr1:84650823 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_80544 0 0 1 0 2 PRKACB chr1:84650865 5'GT 84650865 Upstream 43bp
chr2 27169818 27169818 1 + T C HNSC 27169817 + 27169797 27169837 41 TGTTCCAAAGCGAGCTTCAGCTCGGATCCTCGCTCCTCCCG TGTTCCAAAGCGAGCTTCAGCCCGGATCCTCGCTCCTCCCG < 41bp 0.772482792663408 0.550578808753686 0.3483808 0.70069975 prediction 0.443807967819444 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27169817 chr2:27169818 synonymous SNV . 0 22 hm5C_associated_SNPs_80545 0 0 0 0 1 DPYSL5 chr2:27169778 3'AG 27169778 Downstream 41bp
chr1 164790808 164790808 1 + G A LUSC 164790805 + 164790785 164790825 41 TCGCCATGTTATCAGCCAGACAGGAGGATACAGTGATGGAC TCGCCATGTTATCAGCCAGACAGAAGGATACAGTGATGGAC < 41bp 0.741419154114186 0.519516252632626 0.33556348 0.24714336 prediction 0.44380580296312 Functional Loss - PBX1 ENSG00000185630 CDS Human protein_coding chr1:164790805 chr1:164790808 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_80546 0 0 1 0 1 PBX1 chr1:164790774 3'AG 164790774 Downstream 35bp
chr17 7352034 7352034 1 + G T SKCM 7352032 + 7352012 7352052 41 GCCGCAAGCCTCTCTTCTACCTGGTCAACGTCATTGCCCCA GCCGCAAGCCTCTCTTCTACCTTGTCAACGTCATTGCCCCA < 41bp 0.721901991788889 0.35843567154594 0.06806511 0.022087425 prediction 0.443803983577777 Functional Loss - CHRNB1 ENSG00000170175 CDS Human protein_coding chr17:7352032 chr17:7352034 synonymous SNV . 0 23 hm5C_associated_SNPs_80547 0 0 0 0 1 CHRNB1 chr17:7352107 5'GT 7352107 Upstream 74bp
chr1 65280433 65280433 1 + C T LIHC 65280430 + 65280410 65280450 41 CATAAGACTGGAATTGCAAGCAGCATTCTGGATGCAATCTC CATAAGACTGGAATTGCAAGCAGTATTCTGGATGCAATCTC < 41bp 0.731386167208364 0.509484877020827 0.68017435 0.78158975 prediction 0.443802580375074 Functional Loss - RAVER2 ENSG00000162437 CDS Human protein_coding chr1:65280430 chr1:65280433 synonymous SNV . 0 24 hm5C_associated_SNPs_80548 0 0 1 0 2 RAVER2 chr1:65280387 3'AG 65280387 Downstream 47bp
chr1 65280433 65280433 1 + C T LIHC 65280430 + 65280410 65280450 41 CATAAGACTGGAATTGCAAGCAGCATTCTGGATGCAATCTC CATAAGACTGGAATTGCAAGCAGTATTCTGGATGCAATCTC < 41bp 0.731386167208364 0.509484877020827 0.68017435 0.78158975 prediction 0.443802580375074 Functional Loss - RAVER2 ENSG00000162437 CDS Human protein_coding chr1:65280430 chr1:65280433 synonymous SNV . 0 24 hm5C_associated_SNPs_80548 0 0 1 0 2 RAVER2 chr1:65280523 5'GT 65280523 Upstream 91bp
chr11 33566863 33566863 1 + G A CESC 33566860 + 33566840 33566880 41 GCTGCATCGGCTGCAGTGGTCACGACTGGCAAAATGGCATC GCTGCATCGGCTGCAGTGGTCACAACTGGCAAAATGGCATC < 41bp 0.773338951622345 0.551441967313004 0.33568788 0.2761225 prediction 0.443793968618681 Functional Loss - KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33566860 chr11:33566863 synonymous SNV . 0 24 hm5C_associated_SNPs_80551 0 0 0 0 1 KIAA1549L chr11:33566924 5'GT 33566924 Upstream 62bp
chr14 76639931 76639931 1 + G A COAD 76639928 + 76639908 76639948 41 TCGTCTACCTGGAGCTGCAGCTCGATGCCTCAGAAAGGGGC TCGTCTACCTGGAGCTGCAGCTCAATGCCTCAGAAAGGGGC < 41bp 0.721887298181073 0.488517299273932 0.10269526 0.43565854 prediction 0.443774596362145 Functional Loss - GPATCH2L ENSG00000089916 CDS Human protein_coding chr14:76639928 chr14:76639931 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_80554 0 0 1 0 1 GPATCH2L chr14:76639968 5'GT 76639968 Upstream 38bp
chr3 186459360 186459360 1 + G A SKCM 186459357 + 186459337 186459377 41 TTTTTCACCTTTCCGATCATCACGAATAGGGGAAATAAAAG TTTTTCACCTTTCCGATCATCACAAATAGGGGAAATAAAAG < 41bp 0.741200777434511 0.519315313895264 0.18450528 0.191546 prediction 0.443770927078495 Functional Loss - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186459357 chr3:186459360 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_80556 0 0 0 0 2 KNG1 chr3:186459311 3'AG 186459311 Downstream 50bp
chr3 186459360 186459360 1 + G A SKCM 186459357 + 186459337 186459377 41 TTTTTCACCTTTCCGATCATCACGAATAGGGGAAATAAAAG TTTTTCACCTTTCCGATCATCACAAATAGGGGAAATAAAAG < 41bp 0.741200777434511 0.519315313895264 0.18450528 0.191546 prediction 0.443770927078495 Functional Loss - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186459357 chr3:186459360 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_80556 0 0 0 0 2 KNG1 chr3:186459388 5'GT 186459388 Upstream 29bp
chr1 156834164 156834164 1 + G T UCEC 156834162 + 156834142 156834182 41 ACAGCTACATCGAGAACCAGCAGCATCTGCAGCATCTGGAG ACAGCTACATCGAGAACCAGCATCATCTGCAGCATCTGGAG < 41bp 0.721883141501058 0.36384169074919 0.29247585 0.06302893 prediction 0.443766283002116 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156834162 chr1:156834164 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_80557 0 0 0 0 2 NTRK1 chr1:156834146 3'AG 156834146 Downstream 19bp
chr1 156834164 156834164 1 + G T UCEC 156834162 + 156834142 156834182 41 ACAGCTACATCGAGAACCAGCAGCATCTGCAGCATCTGGAG ACAGCTACATCGAGAACCAGCATCATCTGCAGCATCTGGAG < 41bp 0.721883141501058 0.36384169074919 0.29247585 0.06302893 prediction 0.443766283002116 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156834162 chr1:156834164 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_80557 0 0 0 0 2 NTRK1 chr1:156834220 5'GT 156834220 Upstream 57bp
chr10 133958654 133958654 1 + G A UCEC 133958651 + 133958631 133958671 41 CGAAGTGCAGAGGGCACAGGCGCGGATAGAGGACCTGGAGA CGAAGTGCAGAGGGCACAGGCGCAGATAGAGGACCTGGAGA < 41bp 0.814038415560105 0.592160331669976 0.45560664 0.30276805 prediction 0.443756167780259 Functional Loss - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133958651 chr10:133958654 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_80558 0 0 0 0 2 JAKMIP3 chr10:133958611 3'AG 133958611 Downstream 44bp
chr10 133958654 133958654 1 + G A UCEC 133958651 + 133958631 133958671 41 CGAAGTGCAGAGGGCACAGGCGCGGATAGAGGACCTGGAGA CGAAGTGCAGAGGGCACAGGCGCAGATAGAGGACCTGGAGA < 41bp 0.814038415560105 0.592160331669976 0.45560664 0.30276805 prediction 0.443756167780259 Functional Loss - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133958651 chr10:133958654 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_80558 0 0 0 0 2 JAKMIP3 chr10:133958694 5'GT 133958694 Upstream 41bp
chr19 6928172 6928172 1 + G T LUAD 6928170 + 6928150 6928190 41 CCACAGCTGCTGGCTGAATACAGAGACAGGGTTCATCTGGA CCACAGCTGCTGGCTGAATACATAGACAGGGTTCATCTGGA < 41bp 0.72187733776105 0.366398334692358 0.4014458 0.022953957 prediction 0.443754675522101 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6928170 chr19:6928172 stopgain 0.006 0 23 hm5C_associated_SNPs_80559 0 0 0 0 2 ADGRE1 chr19:6928156 3'AG 6928156 Downstream 17bp
chr19 6928172 6928172 1 + G T LUAD 6928170 + 6928150 6928190 41 CCACAGCTGCTGGCTGAATACAGAGACAGGGTTCATCTGGA CCACAGCTGCTGGCTGAATACATAGACAGGGTTCATCTGGA < 41bp 0.72187733776105 0.366398334692358 0.4014458 0.022953957 prediction 0.443754675522101 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6928170 chr19:6928172 stopgain 0.006 0 23 hm5C_associated_SNPs_80559 0 0 0 0 2 ADGRE1 chr19:6928222 5'GT 6928222 Upstream 51bp
chr8 56879313 56879313 1 + T C LUAD 56879312 + 56879292 56879332 41 CCAAGGTGGCTGTGAAAACCCTGAAGCCAGGAACTATGTCT CCAAGGTGGCTGTGAAAACCCCGAAGCCAGGAACTATGTCT < 41bp 0.796996333574115 0.57512000590359 0.19115722 0.28261706 prediction 0.44375265534105 Functional Loss - LYN ENSG00000254087 CDS Human protein_coding chr8:56879312 chr8:56879313 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_80560 0 0 1 0 1 LYN chr8:56879274 3'AG 56879274 Downstream 40bp
chr2 135621039 135621039 1 + C T SKCM 135621036 + 135621016 135621056 41 GCCAGCACCGTTGTGAGCTACCCCAGGAGGTTCGTGGGTCT GCCAGCACCGTTGTGAGCTACCCTAGGAGGTTCGTGGGTCT < 41bp 0.747743887866003 0.525872424463516 0.43149182 0.5291123 prediction 0.443742926804974 Functional Loss - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135621036 chr2:135621039 synonymous SNV . 0 24 hm5C_associated_SNPs_80566 0 0 0 0 1 ACMSD chr2:135620965 3'AG 135620965 Downstream 75bp
chr16 25704443 25704443 1 + G T LUSC 25704440 + 25704420 25704460 41 GTAGAGCCGCACTTCTTCGACAGGAACTACGAAAAGGGGTT GTAGAGCCGCACTTCTTCGACAGTAACTACGAAAAGGGGTT < 41bp 0.721868764582017 0.3509679097834 0.27196458 0.062031507 prediction 0.443737529164033 Functional Loss - HS3ST4 ENSG00000182601 CDS Human protein_coding chr16:25704440 chr16:25704443 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_80568 0 0 0 0 1 HS3ST4 chr16:25704472 5'GT 25704472 Upstream 30bp
chrX 47972673 47972673 1 + C T rs184179402 47972671 + 47972651 47972691 41 CCAGAGAACCTTTGTCCCTCCACGGATGTGAACACTGGTAA CCAGAGAACCTTTGTCCCTCCATGGATGTGAACACTGGTAA < 41bp 0.721868507272936 0.466340042617056 0.26796016 0.21819603 prediction 0.443737014545872 Functional Loss - SSX6 ENSG00000171483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:47972671 chrX:47972673 . . 0 23 hm5C_associated_SNPs_80569 0 0 0 0 1 SSX6 chrX:47972576 3'AG 47972576 Downstream 98bp
chr10 283566 283566 1 + G A ESCA 283563 + 283543 283583 41 AAGGGGAAGGACAATAAACACCCGATGTACAGGAGGCTGGT AAGGGGAAGGACAATAAACACCCAATGTACAGGAGGCTGGT < 41bp 0.721867767448643 0.498243723873357 0.3699929 0.14066365 prediction 0.443735534897286 Functional Loss - ZMYND11 ENSG00000015171 CDS Human protein_coding chr10:283563 chr10:283566 synonymous SNV . 0 24 hm5C_associated_SNPs_80570 0 0 1 0 2 ZMYND11 chr10:283525 3'AG 283525 Downstream 42bp
chr10 283566 283566 1 + G A ESCA 283563 + 283543 283583 41 AAGGGGAAGGACAATAAACACCCGATGTACAGGAGGCTGGT AAGGGGAAGGACAATAAACACCCAATGTACAGGAGGCTGGT < 41bp 0.721867767448643 0.498243723873357 0.3699929 0.14066365 prediction 0.443735534897286 Functional Loss - ZMYND11 ENSG00000015171 CDS Human protein_coding chr10:283563 chr10:283566 synonymous SNV . 0 24 hm5C_associated_SNPs_80570 0 0 1 0 2 ZMYND11 chr10:283617 5'GT 283617 Upstream 52bp
chr1 17292317 17292317 1 + T C LUAD 17292316 + 17292296 17292336 41 CCTCCCCAGCCTCTCCAGACCTGGACCCGGAGGCAGTGCGC CCTCCCCAGCCTCTCCAGACCCGGACCCGGAGGCAGTGCGC < 41bp 0.721865923171142 0.473155899000355 0.90167636 0.85060066 prediction 0.443731846342283 Functional Loss - CROCC ENSG00000058453 CDS Human protein_coding chr1:17292316 chr1:17292317 nonsynonymous SNV 0.937 3 22 hm5C_associated_SNPs_80571 0 0 0 0 2 CROCC chr1:17292218 3'AG 17292218 Downstream 100bp
chr1 17292317 17292317 1 + T C LUAD 17292316 + 17292296 17292336 41 CCTCCCCAGCCTCTCCAGACCTGGACCCGGAGGCAGTGCGC CCTCCCCAGCCTCTCCAGACCCGGACCCGGAGGCAGTGCGC < 41bp 0.721865923171142 0.473155899000355 0.90167636 0.85060066 prediction 0.443731846342283 Functional Loss - CROCC ENSG00000058453 CDS Human protein_coding chr1:17292316 chr1:17292317 nonsynonymous SNV 0.937 3 22 hm5C_associated_SNPs_80571 0 0 0 0 2 CROCC chr1:17292387 5'GT 17292387 Upstream 71bp
chr9 114429103 114429103 1 + G T HNSC 114429101 + 114429081 114429121 41 TCCCTTTGTTTCAGGTCTCTCAGGCAGCTGCAGAGCTTCAA TCCCTTTGTTTCAGGTCTCTCATGCAGCTGCAGAGCTTCAA < 41bp 0.721865398878595 0.369443459057325 0.6789068 0.046822816 prediction 0.443730797757189 Functional Loss - DNAJC25-GNG10;GNG10 ENSG00000059769;ENSG00000242616;ENSG00000244115 CDS Human other chr9:114429101 chr9:114429103 nonsynonymous SNV 0.971 3 23 hm5C_associated_SNPs_80572 0 0 1 1 1 DNAJC25-GNG10;GNG10 chr9:114429095 3'AG 114429095 Downstream 9bp
chrX 106462113 106462113 1 + G A LUSC 106462110 + 106462090 106462130 41 ACAGTCATCCCTGAAACCAGCGAGGAAAATAATGAGGACAT ACAGTCATCCCTGAAACCAGCGAAGAAAATAATGAGGACAT < 41bp 0.748651643624239 0.526788205637102 0.7734734 0.8740595 prediction 0.443726875974274 Functional Loss - PIH1D3 ENSG00000080572 CDS Human protein_coding chrX:106462110 chrX:106462113 synonymous SNV . 0 24 hm5C_associated_SNPs_80574 0 0 0 0 1 PIH1D3 chrX:106462094 3'AG 106462094 Downstream 20bp
chr19 17628154 17628154 1 + G A CESC 17628151 + 17628131 17628171 41 TGCTGATCCTGGGGGTGGGCCCCGATGGTCACACCTGCTCA TGCTGATCCTGGGGGTGGGCCCCAATGGTCACACCTGCTCA < 41bp 0.721862287374547 0.468944354800479 0.102650315 0.06859639 prediction 0.443724574749094 Functional Loss - PGLS ENSG00000130313 CDS Human protein_coding chr19:17628151 chr19:17628154 nonsynonymous SNV 0.563 4 24 hm5C_associated_SNPs_80576 0 0 1 0 2 PGLS chr19:17628097 3'AG 17628097 Downstream 58bp
chr19 17628154 17628154 1 + G A CESC 17628151 + 17628131 17628171 41 TGCTGATCCTGGGGGTGGGCCCCGATGGTCACACCTGCTCA TGCTGATCCTGGGGGTGGGCCCCAATGGTCACACCTGCTCA < 41bp 0.721862287374547 0.468944354800479 0.102650315 0.06859639 prediction 0.443724574749094 Functional Loss - PGLS ENSG00000130313 CDS Human protein_coding chr19:17628151 chr19:17628154 nonsynonymous SNV 0.563 4 24 hm5C_associated_SNPs_80576 0 0 1 0 2 PGLS chr19:17628198 5'GT 17628198 Upstream 45bp
chr17 61623247 61623247 1 + G A BLCA 61623244 + 61623224 61623264 41 TGGCTCAGATCCTGGATTTGCAGGGAGTTGGGGCCACTGAA TGGCTCAGATCCTGGATTTGCAGAGAGTTGGGGCCACTGAA < 41bp 0.782896217650575 0.561034193262662 0.9204942 0.8991407 prediction 0.443724048775826 Functional Loss - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61623244 chr17:61623247 nonsynonymous SNV 0.648 2 24 hm5C_associated_SNPs_80577 0 0 0 0 1 KCNH6 chr17:61623306 5'GT 61623306 Upstream 60bp
chr3 52841088 52841088 1 + G T ACC 52841086 + 52841066 52841106 41 AGGGCCGTGCCGAGCACTTTCAGCTGGCTGGACACAGTCAC AGGGCCGTGCCGAGCACTTTCATCTGGCTGGACACAGTCAC < 41bp 0.721859973141579 0.365543605498815 0.49893767 0.21080163 prediction 0.443719946283158 Functional Loss - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52841086 chr3:52841088 nonsynonymous SNV 0.928 2 23 hm5C_associated_SNPs_80578 0 0 1 0 2 ITIH3 chr3:52841036 3'AG 52841036 Downstream 53bp
chr3 52841088 52841088 1 + G T ACC 52841086 + 52841066 52841106 41 AGGGCCGTGCCGAGCACTTTCAGCTGGCTGGACACAGTCAC AGGGCCGTGCCGAGCACTTTCATCTGGCTGGACACAGTCAC < 41bp 0.721859973141579 0.365543605498815 0.49893767 0.21080163 prediction 0.443719946283158 Functional Loss - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52841086 chr3:52841088 nonsynonymous SNV 0.928 2 23 hm5C_associated_SNPs_80578 0 0 1 0 2 ITIH3 chr3:52841121 5'GT 52841121 Upstream 34bp
chr5 36183971 36183971 1 + G T LUAD 36183969 + 36183949 36183989 41 ACAAGAGCTGGGGTTAGGATCCGGTTGGACTCTGACATCGG ACAAGAGCTGGGGTTAGGATCCTGTTGGACTCTGACATCGG < 41bp 0.72185696516688 0.456047230490103 0.21972811 0.028491706 prediction 0.44371393033376 Functional Loss - SKP2 ENSG00000145604 CDS Human protein_coding chr5:36183969 chr5:36183971 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_80579 0 0 1 0 1 SKP2 chr5:36183942 3'AG 36183942 Downstream 30bp
chr8 10285672 10285672 1 + C T STAD 10285670 + 10285650 10285690 41 CCCCACAGGTTCTTTCAGAGCACGGCTTCGGCCCCATCACT CCCCACAGGTTCTTTCAGAGCATGGCTTCGGCCCCATCACT < 41bp 0.798493510949026 0.576645678719746 0.33319247 0.3143984 prediction 0.443695664458558 Functional Loss - MSRA ENSG00000175806 CDS Human protein_coding chr8:10285670 chr8:10285672 synonymous SNV . 0 23 hm5C_associated_SNPs_80585 0 0 0 0 1 MSRA chr8:10285658 3'AG 10285658 Downstream 15bp
chrX 153420113 153420113 1 + G A PRAD 153420110 + 153420090 153420130 41 TGTTCAGCGGCAGCTCGTACCCCGGGGTGCAGTCTTACATG TGTTCAGCGGCAGCTCGTACCCCAGGGTGCAGTCTTACATG < 41bp 0.8112954170649 0.589450375255213 0.8444642 0.18111107 prediction 0.443690083619372 Functional Loss - OPN1LW ENSG00000102076 CDS Human protein_coding chrX:153420110 chrX:153420113 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_80586 0 0 0 0 1 OPN1LW chrX:153420049 3'AG 153420049 Downstream 65bp
chr7 128587827 128587827 1 + C T SKCM 128587825 + 128587805 128587845 41 TCAGTACCGGGGGCGGCCACCCCGGGCCCTCACCATCAGCA TCAGTACCGGGGGCGGCCACCCTGGGCCCTCACCATCAGCA < 41bp 0.721843763394169 0.470199402074096 0.24158424 0.07863298 prediction 0.443687526788339 Functional Loss - IRF5 ENSG00000128604 CDS Human protein_coding chr7:128587825 chr7:128587827 nonsynonymous SNV 0.859 3 23 hm5C_associated_SNPs_80587 0 0 0 0 1 IRF5 chr7:128587783 3'AG 128587783 Downstream 45bp
chr7 128587828 128587828 1 + G A UCEC 128587825 + 128587805 128587845 41 TCAGTACCGGGGGCGGCCACCCCGGGCCCTCACCATCAGCA TCAGTACCGGGGGCGGCCACCCCAGGCCCTCACCATCAGCA < 41bp 0.721843763394169 0.482538329677555 0.24158424 0.5980811 prediction 0.443687526788339 Functional Loss - IRF5 ENSG00000128604 CDS Human protein_coding chr7:128587825 chr7:128587828 nonsynonymous SNV 0.767 1 24 hm5C_associated_SNPs_80588 0 0 0 0 1 IRF5 chr7:128587783 3'AG 128587783 Downstream 46bp
chr6 13592071 13592071 1 + G A BLCA 13592068 + 13592048 13592088 41 CGGCGAGTCGTGGTCATCACCCAGAACATCGATGAGCTGCA CGGCGAGTCGTGGTCATCACCCAAAACATCGATGAGCTGCA < 41bp 0.781670763851323 0.559828333181782 0.12664336 0.0800519 prediction 0.443684861339082 Functional Loss - SIRT5 ENSG00000124523 CDS Human protein_coding chr6:13592068 chr6:13592071 synonymous SNV . 0 24 hm5C_associated_SNPs_80591 0 0 0 0 1 SIRT5 chr6:13592126 5'GT 13592126 Upstream 56bp
chr19 46733392 46733392 1 + G A SKCM 46733389 + 46733369 46733409 41 CTTTGCCATTTTCTGCATCTCCAGGCTCCTCTGCTCACACG CTTTGCCATTTTCTGCATCTCCAAGCTCCTCTGCTCACACG < 41bp 0.721836834864597 0.46904056344136 0.898424 0.46117735 prediction 0.443673669729194 Functional Loss - IGFL1 ENSG00000188293 CDS Human protein_coding chr19:46733389 chr19:46733392 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_80595 0 0 0 0 2 IGFL1 chr19:46733365 3'AG 46733365 Downstream 28bp
chr19 46733392 46733392 1 + G A SKCM 46733389 + 46733369 46733409 41 CTTTGCCATTTTCTGCATCTCCAGGCTCCTCTGCTCACACG CTTTGCCATTTTCTGCATCTCCAAGCTCCTCTGCTCACACG < 41bp 0.721836834864597 0.46904056344136 0.898424 0.46117735 prediction 0.443673669729194 Functional Loss - IGFL1 ENSG00000188293 CDS Human protein_coding chr19:46733389 chr19:46733392 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_80595 0 0 0 0 2 IGFL1 chr19:46733418 5'GT 46733418 Upstream 27bp
chr8 99148943 99148943 1 + T C LUAD 99148942 + 99148922 99148962 41 TCTACCATACTCTTGGATCTCTCCAACCACAGGCATTATAA TCTACCATACTCTTGGATCTCCCCAACCACAGGCATTATAA < 41bp 0.721836807169369 0.439039930923596 0.9669355 0.19650075 prediction 0.443673614338738 Functional Loss - POP1 ENSG00000104356 CDS Human protein_coding chr8:99148942 chr8:99148943 synonymous SNV . 0 22 hm5C_associated_SNPs_80596 0 0 1 0 1 POP1 chr8:99148966 5'GT 99148966 Upstream 24bp
chr15 23444011 23444011 1 + C T COAD 23444009 + 23443989 23444029 41 TCTGGCCACCCCCAACAGGACACGGAGGAGAACATCTGGAC TCTGGCCACCCCCAACAGGACATGGAGGAGAACATCTGGAC < 41bp 0.788321052046175 0.566486013862788 0.14409125 0.17425263 prediction 0.443670076366776 Functional Loss - GOLGA8EP ENSG00000175676 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:23444009 chr15:23444011 . . 0 23 hm5C_associated_SNPs_80598 0 0 0 0 2 GOLGA8EP chr15:23444007 3'AG 23444007 Downstream 5bp
chr15 23444011 23444011 1 + C T COAD 23444009 + 23443989 23444029 41 TCTGGCCACCCCCAACAGGACACGGAGGAGAACATCTGGAC TCTGGCCACCCCCAACAGGACATGGAGGAGAACATCTGGAC < 41bp 0.788321052046175 0.566486013862788 0.14409125 0.17425263 prediction 0.443670076366776 Functional Loss - GOLGA8EP ENSG00000175676 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:23444009 chr15:23444011 . . 0 23 hm5C_associated_SNPs_80598 0 0 0 0 2 GOLGA8EP chr15:23444098 5'GT 23444098 Upstream 88bp
chr19 35633639 35633639 1 + G T UCEC 35633637 + 35633617 35633657 41 CCCCCAGGTCTGTCCACCCGCAGGCGGTAGAAACACCTGGA CCCCCAGGTCTGTCCACCCGCATGCGGTAGAAACACCTGGA < 41bp 0.721831147036901 0.364447393738566 0.8656204 0.31545871 prediction 0.443662294073803 Functional Loss - FXYD1 ENSG00000266964 CDS Human protein_coding chr19:35633637 chr19:35633639 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_80601 0 0 1 0 2 FXYD1 chr19:35633624 3'AG 35633624 Downstream 16bp
chr19 35633639 35633639 1 + G T UCEC 35633637 + 35633617 35633657 41 CCCCCAGGTCTGTCCACCCGCAGGCGGTAGAAACACCTGGA CCCCCAGGTCTGTCCACCCGCATGCGGTAGAAACACCTGGA < 41bp 0.721831147036901 0.364447393738566 0.8656204 0.31545871 prediction 0.443662294073803 Functional Loss - FXYD1 ENSG00000266964 CDS Human processed_transcript chr19:35633637 chr19:35633639 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_80601 0 0 1 0 2 FXYD1 chr19:35633675 5'GT 35633675 Upstream 37bp
chr11 75440015 75440015 1 + C T COAD 75440013 + 75439993 75440033 41 GCTTTGGTTTAATACCCTACCGCCGGCCCATCACCACTGTG GCTTTGGTTTAATACCCTACCGTCGGCCCATCACCACTGTG < 41bp 0.763004083156317 0.541174581753437 0.15640172 0.24525067 prediction 0.44365900280576 Functional Loss - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75440013 chr11:75440015 synonymous SNV . 0 23 hm5C_associated_SNPs_80604 0 0 0 1 1 MOGAT2 chr11:75440034 5'GT 75440034 Upstream 20bp
chr1 22310814 22310814 1 + C T SKCM 22310812 + 22310792 22310832 41 TGTGCTGGAGGGGACATCCGCTCCGGCTGCAATGTGAGTCA TGTGCTGGAGGGGACATCCGCTTCGGCTGCAATGTGAGTCA < 41bp 0.721827675783885 0.470933152906613 0.37222028 0.21294528 prediction 0.44365535156777 Functional Loss - CELA3B ENSG00000219073 CDS Human protein_coding chr1:22310812 chr1:22310814 nonsynonymous SNV 0.012 3 23 hm5C_associated_SNPs_80605 0 0 0 0 1 CELA3B chr1:22310824 5'GT 22310824 Upstream 11bp
chr19 10561292 10561292 1 + G A STAD 10561289 + 10561269 10561309 41 TTTTCTGCAGGCGGTCCCCGCTGGGCGGCCCCACCCCTGTC TTTTCTGCAGGCGGTCCCCGCTGAGCGGCCCCACCCCTGTC < 41bp 0.827781103204406 0.605956231806631 0.8885328 0.293072 prediction 0.443649742795549 Functional Loss - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561289 chr19:10561292 nonsynonymous SNV 0.836 0 24 hm5C_associated_SNPs_80606 0 0 0 0 2 PDE4A chr19:10561279 3'AG 10561279 Downstream 14bp
chr19 10561292 10561292 1 + G A STAD 10561289 + 10561269 10561309 41 TTTTCTGCAGGCGGTCCCCGCTGGGCGGCCCCACCCCTGTC TTTTCTGCAGGCGGTCCCCGCTGAGCGGCCCCACCCCTGTC < 41bp 0.827781103204406 0.605956231806631 0.8885328 0.293072 prediction 0.443649742795549 Functional Loss - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561289 chr19:10561292 nonsynonymous SNV 0.836 0 24 hm5C_associated_SNPs_80606 0 0 0 0 2 PDE4A chr19:10561328 5'GT 10561328 Upstream 37bp
chr1 9613739 9613739 1 + C T COAD 9613737 + 9613717 9613757 41 TCCACTAGAAGTCATTAAGACACGGTTGCAGTCTTCAAGAT TCCACTAGAAGTCATTAAGACATGGTTGCAGTCTTCAAGAT < 41bp 0.845552834942005 0.623739150998535 0.21201879 0.19314343 prediction 0.443627367886938 Functional Loss - SLC25A33 ENSG00000171612 CDS Human protein_coding chr1:9613737 chr1:9613739 nonsynonymous SNV 0.644 5 23 hm5C_associated_SNPs_80611 0 0 1 0 1 SLC25A33 chr1:9613684 3'AG 9613684 Downstream 56bp
chr8 120431487 120431487 1 + C T GBM 120431485 + 120431465 120431505 41 CTGTGGTATGGGGTTCTCCACCCGGGTCACCAATAGGAACC CTGTGGTATGGGGTTCTCCACCTGGGTCACCAATAGGAACC < 41bp 0.72180821557046 0.442874290217775 0.5589174 0.2806158 prediction 0.44361643114092 Functional Loss - NOV ENSG00000136999 CDS Human protein_coding chr8:120431485 chr8:120431487 nonsynonymous SNV 0.987 4 23 hm5C_associated_SNPs_80613 0 0 0 0 1 NOV chr8:120431585 5'GT 120431585 Upstream 99bp
chr8 120431488 120431488 1 + G T LUAD 120431485 + 120431465 120431505 41 CTGTGGTATGGGGTTCTCCACCCGGGTCACCAATAGGAACC CTGTGGTATGGGGTTCTCCACCCTGGTCACCAATAGGAACC < 41bp 0.72180821557046 0.331514164620366 0.5589174 0.073649764 prediction 0.44361643114092 Functional Loss - NOV ENSG00000136999 CDS Human protein_coding chr8:120431485 chr8:120431488 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_80614 0 0 0 0 1 NOV chr8:120431585 5'GT 120431585 Upstream 98bp
chr7 75615287 75615287 1 + G A rs1057870 75615284 + 75615264 75615304 41 CTGTACTACGGCTGCCGCCGCTCGGATGAGGACTACCTGTA CTGTACTACGGCTGCCGCCGCTCAGATGAGGACTACCTGTA < 41bp 0.798966874587496 0.577158696204189 0.3989119 0.19141507 prediction 0.443616356766614 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75615284 chr7:75615287 synonymous SNV . 0 24 hm5C_associated_SNPs_80615 2 0 1 0 2 POR chr7:75615241 3'AG 75615241 Downstream 47bp
chr7 75615287 75615287 1 + G A rs1057870 75615284 + 75615264 75615304 41 CTGTACTACGGCTGCCGCCGCTCGGATGAGGACTACCTGTA CTGTACTACGGCTGCCGCCGCTCAGATGAGGACTACCTGTA < 41bp 0.798966874587496 0.577158696204189 0.3989119 0.19141507 prediction 0.443616356766614 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75615284 chr7:75615287 synonymous SNV . 0 24 hm5C_associated_SNPs_80615 2 0 1 0 2 POR chr7:75615386 5'GT 75615386 Upstream 100bp
chr5 131822042 131822042 1 - T A STAD 131822046 - 131822026 131822066 41 GCACTGTCGCCATGTGCTGTCAGCAGCACTCTCCCCGACTG GCACTGTCGCCATGTGCTGTCAGCTGCACTCTCCCCGACTG < 41bp 0.885203968776382 0.66339841442946 0.62064457 0.92051363 prediction 0.443611108693843 Functional Loss - IRF1 ENSG00000125347 CDS Human protein_coding chr5:131822046 chr5:131822042 nonsynonymous SNV 0.816 1 25 hm5C_associated_SNPs_80617 0 0 1 0 2 IRF1 chr5:131821943 5'GT 131821943 Upstream 100bp
chr5 131822042 131822042 1 - T A STAD 131822046 - 131822026 131822066 41 GCACTGTCGCCATGTGCTGTCAGCAGCACTCTCCCCGACTG GCACTGTCGCCATGTGCTGTCAGCTGCACTCTCCCCGACTG < 41bp 0.885203968776382 0.66339841442946 0.62064457 0.92051363 prediction 0.443611108693843 Functional Loss - IRF1 ENSG00000125347 CDS Human protein_coding chr5:131822046 chr5:131822042 nonsynonymous SNV 0.816 1 25 hm5C_associated_SNPs_80617 0 0 1 0 2 IRF1 chr5:131822065 3'AG 131822065 Downstream 24bp
chr2 27291605 27291605 1 + G A BLCA 27291602 + 27291582 27291622 41 TCGGATGCCCTGCATCAAGACTCGATTGCAGGTAATATTTT TCGGATGCCCTGCATCAAGACTCAATTGCAGGTAATATTTT < 41bp 0.721802058282198 0.487602795344298 0.90244895 0.24202973 prediction 0.443604116564396 Functional Loss - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27291602 chr2:27291605 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_80618 0 0 0 0 1 AGBL5 chr2:27291612 5'GT 27291612 Upstream 8bp
chr13 78130048 78130048 1 + G A SKCM 78130045 + 78130025 78130065 41 CTTGAGAAAAATGTCTCCCACAGGAAATGGTAATGTACATG CTTGAGAAAAATGTCTCCCACAGAAAATGGTAATGTACATG < 41bp 0.731511383382533 0.509711338004635 0.75668466 0.33189225 prediction 0.443600090755796 Functional Loss - SCEL ENSG00000136155 CDS Human protein_coding chr13:78130045 chr13:78130048 nonsynonymous SNV 0.939 2 24 hm5C_associated_SNPs_80620 0 0 0 0 2 SCEL chr13:78129992 3'AG 78129992 Downstream 57bp
chr13 78130048 78130048 1 + G A SKCM 78130045 + 78130025 78130065 41 CTTGAGAAAAATGTCTCCCACAGGAAATGGTAATGTACATG CTTGAGAAAAATGTCTCCCACAGAAAATGGTAATGTACATG < 41bp 0.731511383382533 0.509711338004635 0.75668466 0.33189225 prediction 0.443600090755796 Functional Loss - SCEL ENSG00000136155 CDS Human protein_coding chr13:78130045 chr13:78130048 nonsynonymous SNV 0.939 2 24 hm5C_associated_SNPs_80620 0 0 0 0 2 SCEL chr13:78130053 5'GT 78130053 Upstream 6bp
chr18 29691857 29691857 1 + G A LGG 29691854 + 29691834 29691874 41 AAATATAATGAGGAAGTTTTCTGGTAGCTGCAGATGCTGTG AAATATAATGAGGAAGTTTTCTGATAGCTGCAGATGCTGTG < 41bp 0.736382323044587 0.514591269823588 0.3165111 0.1374028 prediction 0.443582106441998 Functional Loss - RNF138 ENSG00000134758 CDS Human protein_coding chr18:29691854 chr18:29691857 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_80625 0 0 1 0 1 RNF138 chr18:29691882 5'GT 29691882 Upstream 26bp
chr1 89886775 89886775 1 + C T rs188152649 89886773 + 89886753 89886793 41 TCCTTTGTGACCCAGAACAGCACCAAGGTCAGAGGGCACCT TCCTTTGTGACCCAGAACAGCATCAAGGTCAGAGGGCACCT < 41bp 0.748546290362775 0.526762495061109 0.07531285 0.077025354 prediction 0.443567590603332 Functional Loss - GBP1P1 ENSG00000225492 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:89886773 chr1:89886775 . . 0 23 hm5C_associated_SNPs_80628 0 0 0 0 1 GBP1P1 chr1:89886779 5'GT 89886779 Upstream 5bp
chrX 23953350 23953350 1 + G A UCEC 23953347 + 23953327 23953367 41 CGATGAGGCCCCTGCATTTTCTGGCGGCAGAAATAACAGCT CGATGAGGCCCCTGCATTTTCTGACGGCAGAAATAACAGCT < 41bp 0.783899798126725 0.562116265767823 0.43960175 0.24865517 prediction 0.443567064717804 Functional Loss - CXorf58 ENSG00000165182 CDS Human protein_coding chrX:23953347 chrX:23953350 nonsynonymous SNV 0.563 4 24 hm5C_associated_SNPs_80629 0 0 0 0 1 CXorf58 chrX:23953313 3'AG 23953313 Downstream 38bp
chr12 4385256 4385256 1 + C T UCEC 4385253 + 4385233 4385273 41 TTTCTTGGCTGGGGTCCCGACTCCGAAGTCCCATCTGCAAC TTTCTTGGCTGGGGTCCCGACTCTGAAGTCCCATCTGCAAC < 41bp 0.758324666564727 0.536543732788903 0.37213475 0.09804264 prediction 0.443561867551648 Functional Loss - CCND2 ENSG00000118971 CDS Human protein_coding chr12:4385253 chr12:4385256 nonsynonymous SNV 0.984 1 24 hm5C_associated_SNPs_80632 0 0 1 0 1 CCND2 chr12:4385171 3'AG 4385171 Downstream 86bp
chr10 54074366 54074366 1 + T C UCEC 54074365 + 54074345 54074385 41 GGCGCTGCGGGGCACCCAGGCTCTGCAGTCAGCGCCGCGCC GGCGCTGCGGGGCACCCAGGCCCTGCAGTCAGCGCCGCGCC < 41bp 0.721777016934973 0.47989175947618 0.14939263 0.16041869 prediction 0.443554033869945 Functional Loss - DKK1 ENSG00000107984 CDS Human protein_coding chr10:54074365 chr10:54074366 nonsynonymous SNV 0.676 0 22 hm5C_associated_SNPs_80633 0 0 1 0 1 DKK1 chr10:54074437 5'GT 54074437 Upstream 72bp
chr8 121326187 121326187 1 + G A GBM 121326184 + 121326164 121326204 41 CTTCCAGGGACCAGATGGCCCTCGGGGTGAAATTGGTCTGC CTTCCAGGGACCAGATGGCCCTCAGGGTGAAATTGGTCTGC < 41bp 0.721773712136966 0.48995579713131 0.13122395 0.059473306 prediction 0.443547424273931 Functional Loss - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121326184 chr8:121326187 nonsynonymous SNV 0.952 5 24 hm5C_associated_SNPs_80635 0 0 0 0 2 COL14A1 chr8:121326171 3'AG 121326171 Downstream 17bp
chr8 121326187 121326187 1 + G A GBM 121326184 + 121326164 121326204 41 CTTCCAGGGACCAGATGGCCCTCGGGGTGAAATTGGTCTGC CTTCCAGGGACCAGATGGCCCTCAGGGTGAAATTGGTCTGC < 41bp 0.721773712136966 0.48995579713131 0.13122395 0.059473306 prediction 0.443547424273931 Functional Loss - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121326184 chr8:121326187 nonsynonymous SNV 0.952 5 24 hm5C_associated_SNPs_80635 0 0 0 0 2 COL14A1 chr8:121326266 5'GT 121326266 Upstream 80bp
chr10 43604510 43604510 1 + G A SKCM 43604507 + 43604487 43604527 41 CTCAACCGGAACCTCTCCATCTCGGAGAACCGCACCATGCA CTCAACCGGAACCTCTCCATCTCAGAGAACCGCACCATGCA < 41bp 0.721766318025598 0.47162189689625 0.9520107 0.79083914 prediction 0.443532636051196 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43604507 chr10:43604510 synonymous SNV . 0 24 hm5C_associated_SNPs_80639 3 0 1 0 1 RET chr10:43604479 3'AG 43604479 Downstream 32bp
chr17 40818677 40818677 1 + C T UCEC 40818675 + 40818655 40818695 41 TGCGGAAGCGGGATGCCTTCCTCGAGCAGTTCCGTAAGGAG TGCGGAAGCGGGATGCCTTCCTTGAGCAGTTCCGTAAGGAG < 41bp 0.850951322765864 0.629193246256556 0.33475065 0.038573682 prediction 0.443516153018615 Functional Loss - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40818675 chr17:40818677 synonymous SNV . 0 23 hm5C_associated_SNPs_80642 0 0 1 0 1 TUBG2 chr17:40818621 3'AG 40818621 Downstream 57bp
chr4 100540148 100540148 1 + T C CESC 100540147 + 100540127 100540167 41 CTAGGAACTTCAGTTACAATCTGGACTAAAAGCCAATATAG CTAGGAACTTCAGTTACAATCCGGACTAAAAGCCAATATAG < 41bp 0.768706969684545 0.546958637037779 0.6259949 0.8388555 prediction 0.443496665293531 Functional Loss - MTTP ENSG00000138823 CDS Human protein_coding chr4:100540147 chr4:100540148 synonymous SNV . 0 22 hm5C_associated_SNPs_80647 0 0 0 0 1 MTTP chr4:100540131 3'AG 100540131 Downstream 18bp
chrX 37984696 37984696 1 + T C STAD 37984695 + 37984675 37984715 41 GTTTGCCTAGAACTTACTATCTGGGACAAGGAGGCCTTTTC GTTTGCCTAGAACTTACTATCCGGGACAAGGAGGCCTTTTC < 41bp 0.798108162721591 0.576360161674504 0.8816849 0.9126257 prediction 0.443496002094175 Functional Loss - SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37984695 chrX:37984696 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_80648 0 0 0 0 1 SYTL5 chrX:37984759 5'GT 37984759 Upstream 64bp
chr7 44151183 44151183 1 + G A UCEC 44151180 + 44151160 44151200 41 GGCAAGAGCTCACGAGGCCTCAAGATCTATGCCATGGAGAT GGCAAGAGCTCACGAGGCCTCAAAATCTATGCCATGGAGAT < 41bp 0.787856496899459 0.566109027408376 0.19806784 0.05084318 prediction 0.443494938982165 Functional Loss - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44151180 chr7:44151183 synonymous SNV . 0 24 hm5C_associated_SNPs_80649 0 0 0 0 2 AEBP1 chr7:44151106 3'AG 44151106 Downstream 78bp
chr7 44151183 44151183 1 + G A UCEC 44151180 + 44151160 44151200 41 GGCAAGAGCTCACGAGGCCTCAAGATCTATGCCATGGAGAT GGCAAGAGCTCACGAGGCCTCAAAATCTATGCCATGGAGAT < 41bp 0.787856496899459 0.566109027408376 0.19806784 0.05084318 prediction 0.443494938982165 Functional Loss - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44151180 chr7:44151183 synonymous SNV . 0 24 hm5C_associated_SNPs_80649 0 0 0 0 2 AEBP1 chr7:44151229 5'GT 44151229 Upstream 47bp
chr22 32871365 32871365 1 + G A rs9621461 32871362 + 32871342 32871382 41 GGAGAACATGGCCCGGCCTCCCGGGGGCTCTGGTCCCCTCC GGAGAACATGGCCCGGCCTCCCGAGGGCTCTGGTCCCCTCC < 41bp 0.788466424316624 0.566720408816511 0.9298323 0.9035646 prediction 0.443492031000227 Functional Loss - FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32871362 chr22:32871365 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_80651 0 0 1 0 1 FBXO7 chr22:32871385 5'GT 32871385 Upstream 21bp
chr1 3544178 3544178 1 + G A BLCA 3544175 + 3544155 3544195 41 TATGCCACTTTCACAGAACACCCGATGGCTGGCGCAGATGA TATGCCACTTTCACAGAACACCCAATGGCTGGCGCAGATGA < 41bp 0.758696631772084 0.536955996887475 0.1138044 0.047953814 prediction 0.443481269769218 Functional Loss - TPRG1L ENSG00000158109 CDS Human protein_coding chr1:3544175 chr1:3544178 synonymous SNV . 0 24 hm5C_associated_SNPs_80654 0 0 1 0 1 TPRG1L chr1:3544217 5'GT 3544217 Upstream 40bp
chr19 55594761 55594761 1 + G A BLCA 55594758 + 55594738 55594778 41 GGCCGCAGGCTGGAGCTGTCCCCGGAGGAGGGACCCCCATA GGCCGCAGGCTGGAGCTGTCCCCAGAGGAGGGACCCCCATA < 41bp 0.721740351027676 0.478104253877788 0.24702156 0.3376274 prediction 0.443480702055351 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55594758 chr19:55594761 synonymous SNV . 0 24 hm5C_associated_SNPs_80655 0 0 0 0 1 EPS8L1 chr19:55594746 3'AG 55594746 Downstream 16bp
chr19 55594760 55594760 1 + C T COAD 55594758 + 55594738 55594778 41 GGCCGCAGGCTGGAGCTGTCCCCGGAGGAGGGACCCCCATA GGCCGCAGGCTGGAGCTGTCCCTGGAGGAGGGACCCCCATA < 41bp 0.721740351027676 0.455624133938135 0.24702156 0.2228548 prediction 0.443480702055351 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55594758 chr19:55594760 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_80656 0 0 0 0 1 EPS8L1 chr19:55594746 3'AG 55594746 Downstream 15bp
chr4 15733442 15733442 1 + G A STAD 15733439 + 15733419 15733459 41 GTCTTATCATTCCCCTCTTTCTGGTGCTGGCTTCCAGGACT GTCTTATCATTCCCCTCTTTCTGATGCTGGCTTCCAGGACT < 41bp 0.721737996067984 0.476303355995398 0.43036002 0.13950077 prediction 0.443475992135967 Functional Loss - BST1 ENSG00000109743 CDS Human protein_coding chr4:15733439 chr4:15733442 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_80659 0 0 0 0 1 BST1 chr4:15733363 3'AG 15733363 Downstream 80bp
chr6 7395353 7395353 1 + A C UCEC 7395349 + 7395329 7395369 41 CTCCAGCAGACAAGGTCTTACGGAAATTTGAGAATAAAATT CTCCAGCAGACAAGGTCTTACGGACATTTGAGAATAAAATT < 41bp 0.721733127958306 0.310456554354172 0.21148357 0.180933 prediction 0.443466255916612 Functional Loss - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7395349 chr6:7395353 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_80661 0 0 1 0 3 RIOK1 chr6:7395254 3'AG 7395254 Downstream 100bp
chr6 7395353 7395353 1 + A C UCEC 7395349 + 7395329 7395369 41 CTCCAGCAGACAAGGTCTTACGGAAATTTGAGAATAAAATT CTCCAGCAGACAAGGTCTTACGGACATTTGAGAATAAAATT < 41bp 0.721733127958306 0.310456554354172 0.21148357 0.180933 prediction 0.443466255916612 Functional Loss - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7395349 chr6:7395353 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_80661 0 0 1 0 3 RIOK1 chr6:7395286 3'AG 7395286 Downstream 68bp
chr6 7395353 7395353 1 + A C UCEC 7395349 + 7395329 7395369 41 CTCCAGCAGACAAGGTCTTACGGAAATTTGAGAATAAAATT CTCCAGCAGACAAGGTCTTACGGACATTTGAGAATAAAATT < 41bp 0.721733127958306 0.310456554354172 0.21148357 0.180933 prediction 0.443466255916612 Functional Loss - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7395349 chr6:7395353 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_80661 0 0 1 0 3 RIOK1 chr6:7395376 5'GT 7395376 Upstream 24bp
chr3 122808134 122808134 1 + C T SKCM 122808131 + 122808111 122808151 41 AATAATGTACTGGTGCTTTACTCCAAATCTGGTGAGTGTCC AATAATGTACTGGTGCTTTACTCTAAATCTGGTGAGTGTCC < 41bp 0.750341528775771 0.528608946296787 0.95990026 0.9265916 prediction 0.443465164957968 Functional Loss - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122808131 chr3:122808134 synonymous SNV . 0 24 hm5C_associated_SNPs_80662 0 0 1 1 1 PDIA5 chr3:122808141 5'GT 122808141 Upstream 8bp
chr7 134717625 134717625 1 + G A BRCA 134717622 + 134717602 134717642 41 AGAGCCCTGTTTTGTGTATTCCCGAGTTGGGGGTAACCGAA AGAGCCCTGTTTTGTGTATTCCCAAGTTGGGGGTAACCGAA < 41bp 0.767775474825552 0.546049727112729 0.4876958 0.3263836 prediction 0.443451495425647 Functional Loss - AGBL3 ENSG00000146856 CDS Human protein_coding chr7:134717622 chr7:134717625 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_80665 0 0 0 0 1 AGBL3 chr7:134717595 3'AG 134717595 Downstream 31bp
chr11 44097123 44097123 1 + G A UCEC 44097120 + 44097100 44097140 41 TCGCTCTTCTCTGCTCTGGCCACGGTGCTGTGTGAGGCCGG TCGCTCTTCTCTGCTCTGGCCACAGTGCTGTGTGAGGCCGG < 41bp 0.79804307966088 0.576320486576252 0.41149113 0.24918386 prediction 0.443445186169256 Functional Loss - ACCS ENSG00000110455 CDS Human protein_coding chr11:44097120 chr11:44097123 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_80666 0 0 1 0 1 ACCS chr11:44097142 5'GT 44097142 Upstream 20bp
chr1 156100449 156100449 1 + G T STAD 156100446 + 156100426 156100466 41 TGACCTGATAGCTGCTCAGGCTCGGCTGAAGGACCTGGAGG TGACCTGATAGCTGCTCAGGCTCTGCTGAAGGACCTGGAGG < 41bp 0.721721371013323 0.32454617177352 0.1164608 0.094805986 prediction 0.443442742026646 Functional Loss - LMNA ENSG00000160789 CDS Human protein_coding chr1:156100446 chr1:156100449 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_80667 4 0 1 0 1 LMNA chr1:156100408 3'AG 156100408 Downstream 42bp
chr8 59352268 59352268 1 + G A BLCA 59352265 + 59352245 59352285 41 ATATGGAGGATCATCAGGATCAAGAATACATAAAACCTAGA ATATGGAGGATCATCAGGATCAAAAATACATAAAACCTAGA < 41bp 0.738181446603923 0.516468289266776 0.14449024 0.029130131 prediction 0.443426314674295 Functional Loss - UBXN2B ENSG00000215114 CDS Human protein_coding chr8:59352265 chr8:59352268 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_80673 0 0 1 0 2 UBXN2B chr8:59352192 3'AG 59352192 Downstream 77bp
chr8 59352268 59352268 1 + G A BLCA 59352265 + 59352245 59352285 41 ATATGGAGGATCATCAGGATCAAGAATACATAAAACCTAGA ATATGGAGGATCATCAGGATCAAAAATACATAAAACCTAGA < 41bp 0.738181446603923 0.516468289266776 0.14449024 0.029130131 prediction 0.443426314674295 Functional Loss - UBXN2B ENSG00000215114 CDS Human protein_coding chr8:59352265 chr8:59352268 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_80673 0 0 1 0 2 UBXN2B chr8:59352329 5'GT 59352329 Upstream 62bp
chr11 118509945 118509945 1 + G A LUAD 118509942 + 118509922 118509962 41 CTCACAGGGGGCAGGCCTTTCCCGAAGACCACATCGACCCT CTCACAGGGGGCAGGCCTTTCCCAAAGACCACATCGACCCT < 41bp 0.721710809300432 0.479181917430711 0.25150335 0.09338671 prediction 0.443421618600864 Functional Loss - PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118509942 chr11:118509945 synonymous SNV . 0 24 hm5C_associated_SNPs_80677 0 0 1 0 2 PHLDB1 chr11:118509880 3'AG 118509880 Downstream 66bp
chr11 118509945 118509945 1 + G A LUAD 118509942 + 118509922 118509962 41 CTCACAGGGGGCAGGCCTTTCCCGAAGACCACATCGACCCT CTCACAGGGGGCAGGCCTTTCCCAAAGACCACATCGACCCT < 41bp 0.721710809300432 0.479181917430711 0.25150335 0.09338671 prediction 0.443421618600864 Functional Loss - PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118509942 chr11:118509945 synonymous SNV . 0 24 hm5C_associated_SNPs_80677 0 0 1 0 2 PHLDB1 chr11:118509969 5'GT 118509969 Upstream 25bp
chr11 120998971 120998971 1 + G A GBM 120998968 + 120998948 120998988 41 CAACAAGAAGAAGCCCGATGCAGGACCTGCTTGGCTGCGGG CAACAAGAAGAAGCCCGATGCAGAACCTGCTTGGCTGCGGG < 41bp 0.800462729840297 0.578754678162036 0.33867726 0.10270205 prediction 0.443416103356521 Functional Loss - TECTA ENSG00000109927 CDS Human protein_coding chr11:120998968 chr11:120998971 nonsynonymous SNV 0.011 1 24 hm5C_associated_SNPs_80678 0 0 0 0 1 TECTA chr11:120999053 5'GT 120999053 Upstream 83bp
chr5 170736693 170736693 1 + A T LUAD 170736689 + 170736669 170736709 41 GCCACCGCCTCTGCCAAGCGCGCTACCCGCCATGCCCTCCG GCCACCGCCTCTGCCAAGCGCGCTTCCCGCCATGCCCTCCG < 41bp 0.721705491917086 0.390854497446334 0.34414166 0.21156815 prediction 0.443410983834172 Functional Loss - TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736689 chr5:170736693 synonymous SNV . 0 25 hm5C_associated_SNPs_80680 0 0 0 0 1 TLX3 chr5:170736790 5'GT 170736790 Upstream 98bp
chr5 170736691 170736691 1 + C T STAD 170736689 + 170736669 170736709 41 GCCACCGCCTCTGCCAAGCGCGCTACCCGCCATGCCCTCCG GCCACCGCCTCTGCCAAGCGCGTTACCCGCCATGCCCTCCG < 41bp 0.721705491917086 0.485248813400945 0.34414166 0.37418976 prediction 0.443410983834172 Functional Loss - TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736689 chr5:170736691 synonymous SNV . 0 23 hm5C_associated_SNPs_80681 0 0 0 0 1 TLX3 chr5:170736790 5'GT 170736790 Upstream 100bp
chr22 50320943 50320943 1 + C T rs1608 50320941 + 50320921 50320961 41 GCCCGACACAGCTGCCCTCCCGCGAAGACCTGTAATGTGCC GCCCGACACAGCTGCCCTCCCGTGAAGACCTGTAATGTGCC < 41bp 0.804260657430475 0.582555559606839 0.113360345 0.044232726 prediction 0.443410195647273 Functional Loss - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50320941 chr22:50320943 synonymous SNV . 0 23 hm5C_associated_SNPs_80682 0 0 1 0 1 CRELD2 chr22:50320903 3'AG 50320903 Downstream 41bp
chr17 37822049 37822049 1 + C T rs45458802 37822047 + 37822027 37822067 41 TGCCAGGTGCTGGTGCAGCGCTCGCCCTGGCTGATGATGCG TGCCAGGTGCTGGTGCAGCGCTTGCCCTGGCTGATGATGCG < 41bp 0.721704774114449 0.47215909033553 0.25314793 0.2093971 prediction 0.443409548228898 Functional Loss - TCAP ENSG00000173991 CDS Human protein_coding chr17:37822047 chr17:37822049 nonsynonymous SNV 0.479 2 23 hm5C_associated_SNPs_80683 4 0 0 0 1 TCAP chr17:37821969 3'AG 37821969 Downstream 81bp
chr8 17417917 17417917 1 + C T SKCM 17417915 + 17417895 17417935 41 GGATCGTCTCCCAGGGTAACCTCGAAGAGTGAGTCCCAGGT GGATCGTCTCCCAGGGTAACCTTGAAGAGTGAGTCCCAGGT < 41bp 0.867626608497644 0.64592573737705 0.9193343 0.15781033 prediction 0.443401742241187 Functional Loss - SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17417915 chr8:17417917 nonsynonymous SNV 0.366 1 23 hm5C_associated_SNPs_80684 0 0 1 0 1 SLC7A2 chr8:17417837 3'AG 17417837 Downstream 81bp
chr14 100848414 100848414 1 + G A CESC 100848411 + 100848391 100848431 41 CCCTGGGGACTGGGGACATCCTCGGTGACCCTGTGGAGCAT CCCTGGGGACTGGGGACATCCTCAGTGACCCTGTGGAGCAT < 41bp 0.754846021098143 0.533146891224736 0.08436367 0.09188336 prediction 0.443398259746814 Functional Loss - WDR25 ENSG00000176473 UTR5 Human protein_coding chr14:100848411 chr14:100848414 . . 0 24 hm5C_associated_SNPs_80685 0 0 0 0 1 WDR25 chr14:100848488 5'GT 100848488 Upstream 75bp
chr7 99702897 99702897 1 + G A UCEC 99702894 + 99702874 99702914 41 GGAATCCGGGTCGATGAAGTCTCGTTTCACAGCTCTGTGAA GGAATCCGGGTCGATGAAGTCTCATTTCACAGCTCTGTGAA < 41bp 0.780605436864566 0.558908651632954 0.18842044 0.14878029 prediction 0.443393570463223 Functional Loss - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99702894 chr7:99702897 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_80687 1 0 1 0 2 AP4M1 chr7:99702863 3'AG 99702863 Downstream 35bp
chr7 99702897 99702897 1 + G A UCEC 99702894 + 99702874 99702914 41 GGAATCCGGGTCGATGAAGTCTCGTTTCACAGCTCTGTGAA GGAATCCGGGTCGATGAAGTCTCATTTCACAGCTCTGTGAA < 41bp 0.780605436864566 0.558908651632954 0.18842044 0.14878029 prediction 0.443393570463223 Functional Loss - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99702894 chr7:99702897 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_80687 1 0 1 0 2 AP4M1 chr7:99702969 5'GT 99702969 Upstream 73bp
chr8 87111240 87111240 1 + G T DLBC 87111237 + 87111217 87111257 41 GGTGCGGAGCTGTACTTCAACGTGGACCATGGCTACCTGGA GGTGCGGAGCTGTACTTCAACGTTGACCATGGCTACCTGGA < 41bp 0.721696554180161 0.325747505215534 0.5439004 0.3167291 prediction 0.443393108360321 Functional Loss - ATP6V0D2 ENSG00000147614 CDS Human protein_coding chr8:87111237 chr8:87111240 synonymous SNV . 0 24 hm5C_associated_SNPs_80688 0 0 0 0 1 ATP6V0D2 chr8:87111337 5'GT 87111337 Upstream 98bp
chr2 73476280 73476280 1 + T C COAD 73476279 + 73476259 73476299 41 GTTCTGTGCTGGCCGAGTACCTGAGGAGGATCTGAAGAGGA GTTCTGTGCTGGCCGAGTACCCGAGGAGGATCTGAAGAGGA < 41bp 0.800063911815207 0.578370578492381 0.39087865 0.50836605 prediction 0.443386666645652 Functional Loss - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73476279 chr2:73476280 synonymous SNV . 0 22 hm5C_associated_SNPs_80690 0 0 1 0 1 CCT7 chr2:73476307 5'GT 73476307 Upstream 28bp
chr7 97832937 97832937 1 + G T UCEC 97832934 + 97832914 97832954 41 GTGGAGGAGAGGCGTGCGGCCCGGACCTGAGCGGCCCAGCC GTGGAGGAGAGGCGTGCGGCCCGTACCTGAGCGGCCCAGCC < 41bp 0.72169160344033 0.319293117022366 0.28756496 0.09996012 prediction 0.443383206880659 Functional Loss - LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97832934 chr7:97832937 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_80691 0 0 1 0 2 LMTK2 chr7:97832886 3'AG 97832886 Downstream 52bp
chr7 97832937 97832937 1 + G T UCEC 97832934 + 97832914 97832954 41 GTGGAGGAGAGGCGTGCGGCCCGGACCTGAGCGGCCCAGCC GTGGAGGAGAGGCGTGCGGCCCGTACCTGAGCGGCCCAGCC < 41bp 0.72169160344033 0.319293117022366 0.28756496 0.09996012 prediction 0.443383206880659 Functional Loss - LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97832934 chr7:97832937 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_80691 0 0 1 0 2 LMTK2 chr7:97833018 5'GT 97833018 Upstream 82bp
chr1 161176280 161176280 1 + C T COAD 161176277 + 161176257 161176297 41 ACCCAGCAGCGCATGGTGTCCTGCGACTAGTGATGGAATTG ACCCAGCAGCGCATGGTGTCCTGTGACTAGTGATGGAATTG < 41bp 0.735271834374818 0.513580446177727 0.18465775 0.19706786 prediction 0.443382776394183 Functional Loss - NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161176277 chr1:161176280 stopgain 0.995 1 24 hm5C_associated_SNPs_80692 0 0 1 0 1 NDUFS2 chr1:161176197 3'AG 161176197 Downstream 84bp
chr4 184618969 184618969 1 + C T SKCM 184618967 + 184618947 184618987 41 CCATGACCACAGTGGACCAGCTCGAGTCTCAAGTGGACAAT CCATGACCACAGTGGACCAGCTTGAGTCTCAAGTGGACAAT < 41bp 0.857421654042892 0.635734886180337 0.3223949 0.28861052 prediction 0.44337353572511 Functional Loss - TRAPPC11 ENSG00000168538 CDS Human protein_coding chr4:184618967 chr4:184618969 synonymous SNV . 0 23 hm5C_associated_SNPs_80695 0 0 1 0 1 TRAPPC11 chr4:184618988 5'GT 184618988 Upstream 20bp
chr11 105948587 105948587 1 + G A LUSC 105948584 + 105948564 105948604 41 GAGGAGAAGGAGCGCATTGGCCAGTTCGTCTTTGCCCGGGA GAGGAGAAGGAGCGCATTGGCCAATTCGTCTTTGCCCGGGA < 41bp 0.761221305215675 0.539536022739818 0.030991763 0.012648642 prediction 0.443370564951713 Functional Loss - AASDHPPT ENSG00000149313 CDS Human protein_coding chr11:105948584 chr11:105948587 synonymous SNV . 0 24 hm5C_associated_SNPs_80696 0 0 1 2 1 AASDHPPT chr11:105948620 5'GT 105948620 Upstream 34bp
chr22 41911921 41911921 1 + G T LUSC 41911919 + 41911899 41911939 41 TGTAGACTCCATCTCCTGCACTGGTGAGGAAGGCGGCCAGG TGTAGACTCCATCTCCTGCACTTGTGAGGAAGGCGGCCAGG < 41bp 0.721682121728485 0.369518049729615 0.31409734 0.16682816 prediction 0.44336424345697 Functional Loss - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41911919 chr22:41911921 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_80700 0 0 1 0 1 ACO2 chr22:41911921 5'GT 41911921 Upstream 1bp
chr2 218940448 218940448 1 + G T SARC 218940446 + 218940426 218940466 41 AGGAGCAAGCCGAGGTGTCCCTGCAGGACGAGATCAAGGTG AGGAGCAAGCCGAGGTGTCCCTTCAGGACGAGATCAAGGTG < 41bp 0.895520606601059 0.673843253262711 0.39685664 0.14769176 prediction 0.443354706676696 Functional Loss - RUFY4 ENSG00000188282 CDS Human protein_coding chr2:218940446 chr2:218940448 synonymous SNV . 0 23 hm5C_associated_SNPs_80701 0 0 0 0 1 RUFY4 chr2:218940463 5'GT 218940463 Upstream 16bp
chr10 72496501 72496501 1 + G T UCEC 72496498 + 72496478 72496518 41 CCTGACAACCCGTACTTCTGCAAGACCAAGAAGGGGCCCCC CCTGACAACCCGTACTTCTGCAATACCAAGAAGGGGCCCCC < 41bp 0.72167698231571 0.314647081526499 0.36030054 0.12349489 prediction 0.443353964631419 Functional Loss - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72496498 chr10:72496501 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_80703 0 0 1 0 2 ADAMTS14 chr10:72496436 3'AG 72496436 Downstream 66bp
chr10 72496501 72496501 1 + G T UCEC 72496498 + 72496478 72496518 41 CCTGACAACCCGTACTTCTGCAAGACCAAGAAGGGGCCCCC CCTGACAACCCGTACTTCTGCAATACCAAGAAGGGGCCCCC < 41bp 0.72167698231571 0.314647081526499 0.36030054 0.12349489 prediction 0.443353964631419 Functional Loss - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72496498 chr10:72496501 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_80703 0 0 1 0 2 ADAMTS14 chr10:72496549 5'GT 72496549 Upstream 49bp
chr1 164768975 164768975 1 + C T UCEC 164768972 + 164768952 164768992 41 CCACCCACGTGATGAATCTCCTGCGAGAGCAAAGCCGGACC CCACCCACGTGATGAATCTCCTGTGAGAGCAAAGCCGGACC < 41bp 0.726968921901327 0.50529264428268 0.2664435 0.09608185 prediction 0.443352555237293 Functional Loss - PBX1 ENSG00000185630 CDS Human protein_coding chr1:164768972 chr1:164768975 stopgain 0.995 1 24 hm5C_associated_SNPs_80704 0 0 0 0 1 PBX1 chr1:164768936 3'AG 164768936 Downstream 40bp
chr16 88797805 88797805 1 + G A rs74318241 88797802 + 88797782 88797822 41 GAGGCATCACGGCCGACCCGCACGGGGCCCGGAGAGGACGC GAGGCATCACGGCCGACCCGCACAGGGCCCGGAGAGGACGC < 41bp 0.721674908400194 0.490958389333814 0.27141786 0.10233119 prediction 0.443349816800387 Functional Loss - LOC100289580 ENSG00000224888 ncRNA_exonic Human antisense chr16:88797802 chr16:88797805 . . 0 24 hm5C_associated_SNPs_80708 0 0 0 0 1 LOC100289580 chr16:88797856 5'GT 88797856 Upstream 52bp
chr11 63313655 63313655 1 + C T STAD 63313653 + 63313633 63313673 41 AAGGTTGAAGTTGGTGTGGCCACGGCGCTTGGAATCCTGGT AAGGTTGAAGTTGGTGTGGCCATGGCGCTTGGAATCCTGGT < 41bp 0.721672374373833 0.478585766833407 0.36369133 0.20507923 prediction 0.443344748747665 Functional Loss - RARRES3 ENSG00000133321 CDS Human protein_coding chr11:63313653 chr11:63313655 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_80710 0 0 0 0 1 RARRES3 chr11:63313621 3'AG 63313621 Downstream 35bp
chr4 15826559 15826559 1 + G C LUSC 15826555 + 15826535 15826575 41 CCCATCAGTTCACACAGGTCCAGCGGGACATGTTCACCCTG CCCATCAGTTCACACAGGTCCAGCCGGACATGTTCACCCTG < 41bp 0.721672033775414 0.423636150356213 0.28095698 0.103462815 prediction 0.443344067550827 Functional Loss - CD38 ENSG00000004468 CDS Human protein_coding chr4:15826555 chr4:15826559 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_80711 0 0 0 0 2 CD38 chr4:15826504 3'AG 15826504 Downstream 56bp
chr4 15826559 15826559 1 + G C LUSC 15826555 + 15826535 15826575 41 CCCATCAGTTCACACAGGTCCAGCGGGACATGTTCACCCTG CCCATCAGTTCACACAGGTCCAGCCGGACATGTTCACCCTG < 41bp 0.721672033775414 0.423636150356213 0.28095698 0.103462815 prediction 0.443344067550827 Functional Loss - CD38 ENSG00000004468 CDS Human protein_coding chr4:15826555 chr4:15826559 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_80711 0 0 0 0 2 CD38 chr4:15826639 5'GT 15826639 Upstream 81bp
chr20 34828459 34828459 1 + T C rs716431 34828458 + 34828438 34828478 41 CCCAGAGGGTGCCACGCCAGCTGAGATAACCAAGCACAGCA CCCAGAGGGTGCCACGCCAGCCGAGATAACCAAGCACAGCA < 41bp 0.79124135085267 0.569572693554106 0.12381023 0.2784781 prediction 0.443337314597128 Functional Loss - AAR2 ENSG00000131043 CDS Human protein_coding chr20:34828458 chr20:34828459 synonymous SNV . 0 22 hm5C_associated_SNPs_80712 0 0 1 0 1 AAR2 chr20:34828547 5'GT 34828547 Upstream 89bp
chr9 34658543 34658543 1 + C T COAD 34658540 + 34658520 34658560 41 GCCCTGACCCACCCCAGGGCCTGCGGGTAGAGTCAGTACCA GCCCTGACCCACCCCAGGGCCTGTGGGTAGAGTCAGTACCA < 41bp 0.721668649557342 0.499881470131407 0.13116887 0.10063955 prediction 0.443337299114683 Functional Loss - IL11RA ENSG00000137070 CDS Human protein_coding chr9:34658540 chr9:34658543 nonsynonymous SNV 0.841 3 24 hm5C_associated_SNPs_80713 0 0 0 2 1 IL11RA chr9:34658517 3'AG 34658517 Downstream 27bp
chrX 151821078 151821078 1 + G A COAD 151821075 + 151821055 151821095 41 GCGCAGGCCCCCCTGGCAAGCCCGGAAAGCCTCGGTTCTTT GCGCAGGCCCCCCTGGCAAGCCCAGAAAGCCTCGGTTCTTT < 41bp 0.721665940753046 0.479823110154346 0.31747144 0.28244728 prediction 0.443331881506092 Functional Loss - GABRQ ENSG00000147402 CDS Human other chrX:151821075 chrX:151821078 synonymous SNV . 0 24 hm5C_associated_SNPs_80714 0 0 0 0 1 GABRQ chrX:151821004 3'AG 151821004 Downstream 75bp
chr1 203044777 203044777 1 + G A rs12130501 203044774 + 203044754 203044794 41 GGCCGCGGGAGCACCACGGTCGCGGCGGCATGCTCAGCGCT GGCCGCGGGAGCACCACGGTCGCAGCGGCATGCTCAGCGCT < 41bp 0.794874362335714 0.573215014813887 0.92610765 0.9013577 prediction 0.443318695043654 Functional Loss - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203044774 chr1:203044777 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_80718 0 0 0 0 1 PPFIA4 chr1:203044705 3'AG 203044705 Downstream 73bp
chr20 46251038 46251038 1 + G A OV 46251035 + 46251015 46251055 41 GGATCCACTGGCCAGTGATTCACGAAAACGCAAATTGCCAT GGATCCACTGGCCAGTGATTCACAAAAACGCAAATTGCCAT < 41bp 0.742928995078988 0.521270799784498 0.54925466 0.20015404 prediction 0.44331639058898 Functional Loss - NCOA3 ENSG00000124151 CDS Human protein_coding chr20:46251035 chr20:46251038 nonsynonymous SNV 0.981 3 24 hm5C_associated_SNPs_80719 0 0 1 0 1 NCOA3 chr20:46250973 3'AG 46250973 Downstream 66bp
chr20 42635419 42635419 1 + G T PAAD 42635416 + 42635396 42635436 41 ACAGGACAGCCACCTGCTGTCGGGCCAGCTGCCCACGGTGA ACAGGACAGCCACCTGCTGTCGGTCCAGCTGCCCACGGTGA < 41bp 0.721652191100999 0.318998191221946 0.9214692 0.14395249 prediction 0.443304382201998 Functional Loss - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42635416 chr20:42635419 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_80722 0 0 0 0 1 TOX2 chr20:42635432 5'GT 42635432 Upstream 14bp
chr19 51298351 51298351 1 + G C CESC 51298347 + 51298327 51298367 41 CTGTAGCTGTGCTGGTGGCACTCAGCTTGGGGCTGGGCCTG CTGTAGCTGTGCTGGTGGCACTCACCTTGGGGCTGGGCCTG < 41bp 0.849830042474748 0.628177937335514 0.32794917 0.3624267 prediction 0.44330421027847 Functional Loss - ACPT ENSG00000142513 CDS Human protein_coding chr19:51298347 chr19:51298351 nonsynonymous SNV 0.040 0 25 hm5C_associated_SNPs_80723 0 0 0 0 1 ACPT chr19:51298300 3'AG 51298300 Downstream 52bp
chr19 43920324 43920324 1 + G A STAD 43920321 + 43920301 43920341 41 GATCCAGCCAATATGTTTAACTGGACCACAGAGGAAGTGGA GATCCAGCCAATATGTTTAACTGAACCACAGAGGAAGTGGA < 41bp 0.757747203873732 0.536097616669433 0.1552977 0.18908855 prediction 0.443299174408599 Functional Loss - TEX101 ENSG00000131126 CDS Human protein_coding chr19:43920321 chr19:43920324 stopgain 0.403 1 24 hm5C_associated_SNPs_80725 0 0 0 0 2 TEX101 chr19:43920251 3'AG 43920251 Downstream 74bp
chr19 43920324 43920324 1 + G A STAD 43920321 + 43920301 43920341 41 GATCCAGCCAATATGTTTAACTGGACCACAGAGGAAGTGGA GATCCAGCCAATATGTTTAACTGAACCACAGAGGAAGTGGA < 41bp 0.757747203873732 0.536097616669433 0.1552977 0.18908855 prediction 0.443299174408599 Functional Loss - TEX101 ENSG00000131126 CDS Human protein_coding chr19:43920321 chr19:43920324 stopgain 0.403 1 24 hm5C_associated_SNPs_80725 0 0 0 0 2 TEX101 chr19:43920394 5'GT 43920394 Upstream 71bp
chr11 60636704 60636704 1 + T C UCEC 60636703 + 60636683 60636723 41 CCGCAGGAGCCTGCAGTCTTCTCGGCCGATTACAGAGGCTG CCGCAGGAGCCTGCAGTCTTCCCGGCCGATTACAGAGGCTG < 41bp 0.799215374301578 0.577567158877644 0.34629136 0.46426123 prediction 0.443296430847869 Functional Loss - ZP1 ENSG00000149506 CDS Human protein_coding chr11:60636703 chr11:60636704 nonsynonymous SNV 0.442 3 22 hm5C_associated_SNPs_80726 0 0 0 0 2 ZP1 chr11:60636618 3'AG 60636618 Downstream 87bp
chr11 60636704 60636704 1 + T C UCEC 60636703 + 60636683 60636723 41 CCGCAGGAGCCTGCAGTCTTCTCGGCCGATTACAGAGGCTG CCGCAGGAGCCTGCAGTCTTCCCGGCCGATTACAGAGGCTG < 41bp 0.799215374301578 0.577567158877644 0.34629136 0.46426123 prediction 0.443296430847869 Functional Loss - ZP1 ENSG00000149506 CDS Human protein_coding chr11:60636703 chr11:60636704 nonsynonymous SNV 0.442 3 22 hm5C_associated_SNPs_80726 0 0 0 0 2 ZP1 chr11:60636739 5'GT 60636739 Upstream 36bp
chr2 101607305 101607305 1 + G A UCEC 101607302 + 101607282 101607322 41 TCCTGTGACGCAAGGCAGCCCTCGGAAGTCAGCAGGACGGG TCCTGTGACGCAAGGCAGCCCTCAGAAGTCAGCAGGACGGG < 41bp 0.721648166478341 0.476321915046918 0.049828023 0.055344045 prediction 0.443296332956682 Functional Loss - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101607302 chr2:101607305 synonymous SNV . 0 24 hm5C_associated_SNPs_80727 0 0 1 0 2 NPAS2 chr2:101607242 3'AG 101607242 Downstream 64bp
chr2 101607305 101607305 1 + G A UCEC 101607302 + 101607282 101607322 41 TCCTGTGACGCAAGGCAGCCCTCGGAAGTCAGCAGGACGGG TCCTGTGACGCAAGGCAGCCCTCAGAAGTCAGCAGGACGGG < 41bp 0.721648166478341 0.476321915046918 0.049828023 0.055344045 prediction 0.443296332956682 Functional Loss - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101607302 chr2:101607305 synonymous SNV . 0 24 hm5C_associated_SNPs_80727 0 0 1 0 2 NPAS2 chr2:101607334 5'GT 101607334 Upstream 30bp
chr14 24026174 24026174 1 + G T rs141465409 24026172 + 24026152 24026192 41 GGAGCTCAAATGTCCTGGAGCAGCAGGTGTCTTAGGACCCC GGAGCTCAAATGTCCTGGAGCATCAGGTGTCTTAGGACCCC < 41bp 0.721643742801032 0.390431819241932 0.71368504 0.49561793 prediction 0.443287485602064 Functional Loss - THTPA ENSG00000259431 CDS Human protein_coding chr14:24026172 chr14:24026174 nonsynonymous SNV 0.858 0 23 hm5C_associated_SNPs_80729 0 0 1 0 2 THTPA chr14:24026243 5'GT 24026243 Upstream 70bp
chr14 24026174 24026174 1 + G T rs141465409 24026172 + 24026152 24026192 41 GGAGCTCAAATGTCCTGGAGCAGCAGGTGTCTTAGGACCCC GGAGCTCAAATGTCCTGGAGCATCAGGTGTCTTAGGACCCC < 41bp 0.721643742801032 0.390431819241932 0.71368504 0.49561793 prediction 0.443287485602064 Functional Loss - THTPA ENSG00000259431 CDS Human protein_coding chr14:24026172 chr14:24026174 nonsynonymous SNV 0.858 0 23 hm5C_associated_SNPs_80729 0 0 1 0 2 THTPA chr14:24026248 5'GT 24026248 Upstream 75bp
chr11 34154602 34154602 1 + C T COAD 34154599 + 34154579 34154619 41 CCCAATGATCTCCAGATGCTCTCCGATGCACCTGCTCACCA CCCAATGATCTCCAGATGCTCTCTGATGCACCTGCTCACCA < 41bp 0.739906113224593 0.518273471469714 0.111038834 0.018227547 prediction 0.443265283509758 Functional Loss - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34154599 chr11:34154602 synonymous SNV . 0 24 hm5C_associated_SNPs_80734 0 0 1 0 2 NAT10 chr11:34154573 3'AG 34154573 Downstream 30bp
chr11 34154602 34154602 1 + C T COAD 34154599 + 34154579 34154619 41 CCCAATGATCTCCAGATGCTCTCCGATGCACCTGCTCACCA CCCAATGATCTCCAGATGCTCTCTGATGCACCTGCTCACCA < 41bp 0.739906113224593 0.518273471469714 0.111038834 0.018227547 prediction 0.443265283509758 Functional Loss - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34154599 chr11:34154602 synonymous SNV . 0 24 hm5C_associated_SNPs_80734 0 0 1 0 2 NAT10 chr11:34154689 5'GT 34154689 Upstream 88bp
chr19 14574911 14574911 1 + G A BRCA 14574908 + 14574888 14574928 41 AAGCTGAACCTCGGCACTGACTCGGACAGCTCACCTCAGAA AAGCTGAACCTCGGCACTGACTCAGACAGCTCACCTCAGAA < 41bp 0.721632296487322 0.47141591604263 0.33890665 0.20234427 prediction 0.443264592974644 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574908 chr19:14574911 synonymous SNV . 0 24 hm5C_associated_SNPs_80735 0 0 1 0 2 PKN1 chr19:14574872 3'AG 14574872 Downstream 40bp
chr19 14574911 14574911 1 + G A BRCA 14574908 + 14574888 14574928 41 AAGCTGAACCTCGGCACTGACTCGGACAGCTCACCTCAGAA AAGCTGAACCTCGGCACTGACTCAGACAGCTCACCTCAGAA < 41bp 0.721632296487322 0.47141591604263 0.33890665 0.20234427 prediction 0.443264592974644 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574908 chr19:14574911 synonymous SNV . 0 24 hm5C_associated_SNPs_80735 0 0 1 0 2 PKN1 chr19:14574965 5'GT 14574965 Upstream 55bp
chr6 123039098 123039098 1 + C T UCEC 123039095 + 123039075 123039115 41 CCCCTCAAACTGGAGGCTCTCTCCGTGAAGGAAGGTAATAC CCCCTCAAACTGGAGGCTCTCTCTGTGAAGGAAGGTAATAC < 41bp 0.741642204850523 0.520010589490664 0.19556463 0.10696104 prediction 0.443263230719717 Functional Loss - PKIB ENSG00000135549 CDS Human protein_coding chr6:123039095 chr6:123039098 synonymous SNV . 0 24 hm5C_associated_SNPs_80736 0 0 1 0 1 PKIB chr6:123039108 5'GT 123039108 Upstream 11bp
chr15 45455873 45455873 1 + G A UCEC 45455870 + 45455850 45455890 41 CTGGCTGAGAAGTTCGACCTCAGGACCACTATGCTGGTATG CTGGCTGAGAAGTTCGACCTCAGAACCACTATGCTGGTATG < 41bp 0.772053048773861 0.55042315845233 0.83933914 0.36149004 prediction 0.443259780643063 Functional Loss - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45455870 chr15:45455873 synonymous SNV . 0 24 hm5C_associated_SNPs_80738 0 0 0 0 1 DUOX1 chr15:45455885 5'GT 45455885 Upstream 13bp
chr1 16091635 16091635 1 + G A SKCM 16091632 + 16091612 16091652 41 CTCCTGCCCCCATGAAGACACCCGAGGCTGGCTTGGCGGGG CTCCTGCCCCCATGAAGACACCCAAGGCTGGCTTGGCGGGG < 41bp 0.806600101150458 0.584975813191354 0.22886989 0.23251456 prediction 0.443248575918207 Functional Loss - FBLIM1 ENSG00000162458 CDS Human protein_coding chr1:16091632 chr1:16091635 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_80743 0 0 1 0 1 FBLIM1 chr1:16091728 5'GT 16091728 Upstream 94bp
chr1 236912466 236912466 1 + G A LGG 236912463 + 236912443 236912483 41 AAACCATTGATCAGCTTCACCTGGAGTTTGCCAAGAGGGCT AAACCATTGATCAGCTTCACCTGAAGTTTGCCAAGAGGGCT < 41bp 0.721623609508031 0.484041672385049 0.11742699 0.10141596 prediction 0.443247219016062 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236912463 chr1:236912466 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_80745 0 0 1 0 2 ACTN2 chr1:236912424 3'AG 236912424 Downstream 43bp
chr1 236912466 236912466 1 + G A LGG 236912463 + 236912443 236912483 41 AAACCATTGATCAGCTTCACCTGGAGTTTGCCAAGAGGGCT AAACCATTGATCAGCTTCACCTGAAGTTTGCCAAGAGGGCT < 41bp 0.721623609508031 0.484041672385049 0.11742699 0.10141596 prediction 0.443247219016062 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236912463 chr1:236912466 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_80745 0 0 1 0 2 ACTN2 chr1:236912564 5'GT 236912564 Upstream 99bp
chr10 82330039 82330039 1 + G A UCEC 82330036 + 82330016 82330056 41 GGAGCTGATTGCAGAGAGGGCGCGGCTGCAGGCACAGAGGG GGAGCTGATTGCAGAGAGGGCGCAGCTGCAGGCACAGAGGG < 41bp 0.805629400298916 0.58401027588267 0.85273576 0.6950835 prediction 0.443238248832492 Functional Loss - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82330036 chr10:82330039 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_80748 0 0 0 0 1 SH2D4B chr10:82330072 5'GT 82330072 Upstream 34bp
chr20 45357995 45357995 1 + C T rs563376340 45357993 + 45357973 45358013 41 CCCGCCCTCCTGTTTCCAGGCACCATCGGCTTGTCCTGGAC CCCGCCCTCCTGTTTCCAGGCATCATCGGCTTGTCCTGGAC < 41bp 0.721616738598233 0.430369115053637 0.036601633 0.07287642 prediction 0.443233477196466 Functional Loss - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45357993 chr20:45357995 nonsynonymous SNV 0.756 0 23 hm5C_associated_SNPs_80750 2 0 1 0 1 SLC2A10 chr20:45357992 3'AG 45357992 Downstream 4bp
chr5 23522420 23522420 1 + G A COAD 23522417 + 23522397 23522437 41 CTCTTCTCCAACCTAGAACTCAGGAAGAAGGAGACTGAAAG CTCTTCTCCAACCTAGAACTCAGAAAGAAGGAGACTGAAAG < 41bp 0.721615491620728 0.489749510142248 0.8281606 0.42915425 prediction 0.443230983241457 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23522417 chr5:23522420 synonymous SNV . 0 24 hm5C_associated_SNPs_80751 0 0 0 0 2 PRDM9 chr5:23522413 3'AG 23522413 Downstream 8bp
chr5 23522420 23522420 1 + G A COAD 23522417 + 23522397 23522437 41 CTCTTCTCCAACCTAGAACTCAGGAAGAAGGAGACTGAAAG CTCTTCTCCAACCTAGAACTCAGAAAGAAGGAGACTGAAAG < 41bp 0.721615491620728 0.489749510142248 0.8281606 0.42915425 prediction 0.443230983241457 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23522417 chr5:23522420 synonymous SNV . 0 24 hm5C_associated_SNPs_80751 0 0 0 0 2 PRDM9 chr5:23522514 5'GT 23522514 Upstream 95bp
chr16 2138528 2138528 1 + C T GBM 2138526 + 2138506 2138546 41 TAGCAAAGCCCCTGCACAGACTCCAGCCGAGCCCACACCTG TAGCAAAGCCCCTGCACAGACTTCAGCCGAGCCCACACCTG < 41bp 0.821640899693178 0.600027262202939 0.93338656 0.35364062 prediction 0.443227274980477 Functional Loss - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2138526 chr16:2138528 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_80753 0 0 1 0 1 TSC2 chr16:2138447 3'AG 2138447 Downstream 82bp
chr16 31343009 31343009 1 + C T STAD 31343007 + 31342987 31343027 41 ATGATGAGTGAAGGGGGTCCCCCGGGGGCCGAACCCCAGTA ATGATGAGTGAAGGGGGTCCCCTGGGGGCCGAACCCCAGTA < 41bp 0.809811854171945 0.588198469858471 0.8770999 0.8344883 prediction 0.443226768626948 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31343007 chr16:31343009 nonsynonymous SNV 0.014 0 23 hm5C_associated_SNPs_80754 0 0 0 0 1 ITGAM chr16:31342957 3'AG 31342957 Downstream 53bp
chr12 50472281 50472281 1 + C T LUAD 50472278 + 50472258 50472298 41 GATTTGGATTTCTTCGACTCCTACAGCATCACTGCCTGCCG GATTTGGATTTCTTCGACTCCTATAGCATCACTGCCTGCCG < 41bp 0.737757616739839 0.516144979797459 0.86208296 0.35382095 prediction 0.44322527388476 Functional Loss - ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50472278 chr12:50472281 synonymous SNV . 0 24 hm5C_associated_SNPs_80756 0 0 0 0 2 ASIC1 chr12:50472204 3'AG 50472204 Downstream 78bp
chr12 50472281 50472281 1 + C T LUAD 50472278 + 50472258 50472298 41 GATTTGGATTTCTTCGACTCCTACAGCATCACTGCCTGCCG GATTTGGATTTCTTCGACTCCTATAGCATCACTGCCTGCCG < 41bp 0.737757616739839 0.516144979797459 0.86208296 0.35382095 prediction 0.44322527388476 Functional Loss - ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50472278 chr12:50472281 synonymous SNV . 0 24 hm5C_associated_SNPs_80756 0 0 0 0 2 ASIC1 chr12:50472360 5'GT 50472360 Upstream 80bp
chr11 47345285 47345285 1 + G C KIRP 47345284 + 47345264 47345304 41 GTGTATGAGCGCTGGTGGTACGAGAAGCTCATCAACATGAC GTGTATGAGCGCTGGTGGTACCAGAAGCTCATCAACATGAC < 41bp 0.721609550474125 0.420591834783572 0.31215546 0.22190353 prediction 0.44321910094825 Functional Loss - MADD ENSG00000110514 CDS Human protein_coding chr11:47345284 chr11:47345285 nonsynonymous SNV 0.991 4 22 hm5C_associated_SNPs_80759 0 0 1 0 1 MADD chr11:47345222 3'AG 47345222 Downstream 64bp
chr3 113004303 113004303 1 + C T UCEC 113004301 + 113004281 113004321 41 ACCAGCTGCTGCAGCCCCATCACGACTGCTGCCAACGCCAG ACCAGCTGCTGCAGCCCCATCATGACTGCTGCCAACGCCAG < 41bp 0.833175768863744 0.61156735451009 0.6435577 0.75627387 prediction 0.443216828707309 Functional Loss - BOC ENSG00000144857 CDS Human protein_coding chr3:113004301 chr3:113004303 synonymous SNV . 0 23 hm5C_associated_SNPs_80760 0 0 0 0 1 BOC chr3:113004219 3'AG 113004219 Downstream 85bp
chr17 4621248 4621248 1 + C T BRCA 4621245 + 4621225 4621265 41 GGAGAAACCCGGCCCCCAGCCTTCAGCCGAAACCACACGCC GGAGAAACCCGGCCCCCAGCCTTTAGCCGAAACCACACGCC < 41bp 0.721608413013491 0.491106382250252 0.26413816 0.17065346 prediction 0.443216826026981 Functional Loss - ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4621245 chr17:4621248 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_80761 0 0 0 0 2 ARRB2 chr17:4621183 3'AG 4621183 Downstream 66bp
chr17 4621248 4621248 1 + C T BRCA 4621245 + 4621225 4621265 41 GGAGAAACCCGGCCCCCAGCCTTCAGCCGAAACCACACGCC GGAGAAACCCGGCCCCCAGCCTTTAGCCGAAACCACACGCC < 41bp 0.721608413013491 0.491106382250252 0.26413816 0.17065346 prediction 0.443216826026981 Functional Loss - ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4621245 chr17:4621248 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_80761 0 0 0 0 2 ARRB2 chr17:4621318 5'GT 4621318 Upstream 71bp
chr5 149212318 149212318 1 + C T COAD 149212315 + 149212295 149212335 41 TCACCTCGGCACAGTGCTGCCTGCAGGATCGGGGTCTGCAG TCACCTCGGCACAGTGCTGCCTGTAGGATCGGGGTCTGCAG < 41bp 0.739552383985738 0.517952066258768 0.1538203 0.15063143 prediction 0.443200635453941 Functional Loss - PPARGC1B ENSG00000155846 CDS Human protein_coding chr5:149212315 chr5:149212318 stopgain 0.005 0 24 hm5C_associated_SNPs_80764 0 0 1 0 1 PPARGC1B chr5:149212219 3'AG 149212219 Downstream 100bp
chr17 42255628 42255628 1 + T C rs137960715 42255627 + 42255607 42255647 41 TGGTGAACCAGCCAAGGCAGCTGCAGCACCTGGCCCGACTA TGGTGAACCAGCCAAGGCAGCCGCAGCACCTGGCCCGACTA < 41bp 0.797605199409519 0.576006484970723 0.25021857 0.16064388 prediction 0.443197428877592 Functional Loss - ASB16 ENSG00000161664 CDS Human protein_coding chr17:42255627 chr17:42255628 nonsynonymous SNV 0.931 5 22 hm5C_associated_SNPs_80765 0 0 0 0 1 ASB16 chr17:42255573 3'AG 42255573 Downstream 56bp
chr12 113354534 113354534 1 + C T BLCA 113354532 + 113354512 113354552 41 AAGTACCTGAGAAGGCAGCTCACGAAACCCAGGTATGCTAT AAGTACCTGAGAAGGCAGCTCATGAAACCCAGGTATGCTAT < 41bp 0.841674284237795 0.620077145536223 0.32324576 0.17499596 prediction 0.443194277403145 Functional Loss - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113354532 chr12:113354534 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_80767 0 0 0 0 1 OAS1 chr12:113354543 5'GT 113354543 Upstream 10bp
chr16 57159811 57159811 1 + G A BLCA 57159808 + 57159788 57159828 41 CAGCCTCCAACGGGAATCCCCTCGACCCTTCCTCTTTGCAC CAGCCTCCAACGGGAATCCCCTCAACCCTTCCTCTTTGCAC < 41bp 0.721591684090568 0.469871144399364 0.11826268 0.012247443 prediction 0.443183368181135 Functional Loss - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57159808 chr16:57159811 nonsynonymous SNV 0.962 1 24 hm5C_associated_SNPs_80770 0 0 1 0 2 CPNE2 chr16:57159772 3'AG 57159772 Downstream 40bp
chr16 57159811 57159811 1 + G A BLCA 57159808 + 57159788 57159828 41 CAGCCTCCAACGGGAATCCCCTCGACCCTTCCTCTTTGCAC CAGCCTCCAACGGGAATCCCCTCAACCCTTCCTCTTTGCAC < 41bp 0.721591684090568 0.469871144399364 0.11826268 0.012247443 prediction 0.443183368181135 Functional Loss - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57159808 chr16:57159811 nonsynonymous SNV 0.962 1 24 hm5C_associated_SNPs_80770 0 0 1 0 2 CPNE2 chr16:57159905 5'GT 57159905 Upstream 95bp
chr6 26158709 26158709 1 + G T LUAD 26158707 + 26158687 26158727 41 CGGCCGTGCGCCTGCTGCTTCCGGGGGAGCTGGCCAAGCAC CGGCCGTGCGCCTGCTGCTTCCTGGGGAGCTGGCCAAGCAC < 41bp 0.907928214241513 0.686337248330008 0.93011296 0.59585005 prediction 0.443181931823009 Functional Loss - HIST1H2BD ENSG00000158373 CDS Human protein_coding chr6:26158707 chr6:26158709 synonymous SNV . 0 23 hm5C_associated_SNPs_80771 0 0 1 0 1 HIST1H2BD chr6:26158787 5'GT 26158787 Upstream 79bp
chr17 4857108 4857108 1 + G A rs202030238 4857105 + 4857085 4857125 41 TGTACCGCCACATCGCAGATCTCGCTGGGAACCCTGACCTC TGTACCGCCACATCGCAGATCTCACTGGGAACCCTGACCTC < 41bp 0.721586439504936 0.462080277054421 0.06339452 0.06505281 prediction 0.443172879009873 Functional Loss - ENO3 ENSG00000108515 CDS Human protein_coding chr17:4857105 chr17:4857108 nonsynonymous SNV 0.891 4 24 hm5C_associated_SNPs_80774 0 0 1 0 1 ENO3 chr17:4857140 5'GT 4857140 Upstream 33bp
chr22 25007141 25007141 1 + G T UCEC 25007138 + 25007118 25007158 41 CTCTGGCTGCCCTCAGCCTCCAAGGAACCTGACAACCATGT CTCTGGCTGCCCTCAGCCTCCAATGAACCTGACAACCATGT < 41bp 0.721583448941525 0.323464661498764 0.2373848 0.05621147 prediction 0.443166897883051 Functional Loss - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25007138 chr22:25007141 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_80776 0 0 1 0 3 GGT1 chr22:25007042 3'AG 25007042 Downstream 100bp
chr22 25007141 25007141 1 + G T UCEC 25007138 + 25007118 25007158 41 CTCTGGCTGCCCTCAGCCTCCAAGGAACCTGACAACCATGT CTCTGGCTGCCCTCAGCCTCCAATGAACCTGACAACCATGT < 41bp 0.721583448941525 0.323464661498764 0.2373848 0.05621147 prediction 0.443166897883051 Functional Loss - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25007138 chr22:25007141 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_80776 0 0 1 0 3 GGT1 chr22:25007045 3'AG 25007045 Downstream 97bp
chr22 25007141 25007141 1 + G T UCEC 25007138 + 25007118 25007158 41 CTCTGGCTGCCCTCAGCCTCCAAGGAACCTGACAACCATGT CTCTGGCTGCCCTCAGCCTCCAATGAACCTGACAACCATGT < 41bp 0.721583448941525 0.323464661498764 0.2373848 0.05621147 prediction 0.443166897883051 Functional Loss - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25007138 chr22:25007141 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_80776 0 0 1 0 3 GGT1 chr22:25007212 5'GT 25007212 Upstream 72bp
chr6 127469958 127469958 1 + G A GBM 127469955 + 127469935 127469975 41 TCCAAGTGGATATTATGGAACTCGATATCCAGATATAAATA TCCAAGTGGATATTATGGAACTCAATATCCAGATATAAATA < 41bp 0.743513943673802 0.521933045957259 0.16799134 0.09782702 prediction 0.443161795433085 Functional Loss - RSPO3 ENSG00000146374 CDS Human protein_coding chr6:127469955 chr6:127469958 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_80778 0 0 0 0 1 RSPO3 chr6:127469984 5'GT 127469984 Upstream 27bp
chr16 1703113 1703113 1 + C T CESC 1703111 + 1703091 1703131 41 AGCTACAGCCGCGGAACAACCACGCCTGGGCCCGTGTGCAG AGCTACAGCCGCGGAACAACCATGCCTGGGCCCGTGTGCAG < 41bp 0.721580429792773 0.443411834678429 0.29574412 0.24998632 prediction 0.443160859585545 Functional Loss - CRAMP1 ENSG00000007545 CDS Human protein_coding chr16:1703111 chr16:1703113 synonymous SNV . 0 23 hm5C_associated_SNPs_80780 0 0 1 0 2 CRAMP1 chr16:1703034 3'AG 1703034 Downstream 80bp
chr16 1703113 1703113 1 + C T CESC 1703111 + 1703091 1703131 41 AGCTACAGCCGCGGAACAACCACGCCTGGGCCCGTGTGCAG AGCTACAGCCGCGGAACAACCATGCCTGGGCCCGTGTGCAG < 41bp 0.721580429792773 0.443411834678429 0.29574412 0.24998632 prediction 0.443160859585545 Functional Loss - CRAMP1 ENSG00000007545 CDS Human protein_coding chr16:1703111 chr16:1703113 synonymous SNV . 0 23 hm5C_associated_SNPs_80780 0 0 1 0 2 CRAMP1 chr16:1703157 5'GT 1703157 Upstream 45bp
chr1 1115463 1115463 1 + G A PAAD 1115460 + 1115440 1115480 41 AGCAGCCAGGAGGAGGGACTCCGGTGTCAGCCAAGCCAGCC AGCAGCCAGGAGGAGGGACTCCGATGTCAGCCAAGCCAGCC < 41bp 0.769441671662865 0.547863878242895 0.7802914 0.33980167 prediction 0.443155586839941 Functional Loss - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1115460 chr1:1115463 synonymous SNV . 0 24 hm5C_associated_SNPs_80782 0 0 0 0 1 TTLL10 chr1:1115414 3'AG 1115414 Downstream 50bp
chr1 201858584 201858584 1 + G C LUSC 201858583 + 201858563 201858603 41 CTGCCCGCAGTGCTGGCCGGCGAGGACTGCCTGTGGTACCT CTGCCCGCAGTGCTGGCCGGCCAGGACTGCCTGTGGTACCT < 41bp 0.721573023865634 0.404179368403739 0.8311888 0.30007678 prediction 0.443146047731268 Functional Loss - SHISA4 ENSG00000198892 CDS Human protein_coding chr1:201858583 chr1:201858584 nonsynonymous SNV 0.977 2 22 hm5C_associated_SNPs_80784 0 0 1 0 1 SHISA4 chr1:201858573 3'AG 201858573 Downstream 12bp
chrX 47070610 47070610 1 + C T LAML 47070608 + 47070588 47070628 41 TCTGACCAGGAGCTGCAGAGCGCCAATGCCTCTGTTGGTGA TCTGACCAGGAGCTGCAGAGCGTCAATGCCTCTGTTGGTGA < 41bp 0.835907191580396 0.614334392380374 0.23605132 0.23544276 prediction 0.443145598400044 Functional Loss - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47070608 chrX:47070610 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_80786 0 0 1 0 1 UBA1 chrX:47070624 5'GT 47070624 Upstream 15bp
chr20 45355598 45355598 1 + A C rs545801780 45355594 + 45355574 45355614 41 TTCAACTGGGCGGCCAACCTCTTCATCAGCCTCTCCTTCCT TTCAACTGGGCGGCCAACCTCTTCCTCAGCCTCTCCTTCCT < 41bp 0.721572067997984 0.277921895192995 0.05563411 0.048915476 prediction 0.443144135995967 Functional Loss - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45355594 chr20:45355598 nonsynonymous SNV 0.767 1 25 hm5C_associated_SNPs_80787 0 0 0 0 2 SLC2A10 chr20:45355503 3'AG 45355503 Downstream 96bp
chr20 45355598 45355598 1 + A C rs545801780 45355594 + 45355574 45355614 41 TTCAACTGGGCGGCCAACCTCTTCATCAGCCTCTCCTTCCT TTCAACTGGGCGGCCAACCTCTTCCTCAGCCTCTCCTTCCT < 41bp 0.721572067997984 0.277921895192995 0.05563411 0.048915476 prediction 0.443144135995967 Functional Loss - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45355594 chr20:45355598 nonsynonymous SNV 0.767 1 25 hm5C_associated_SNPs_80787 0 0 0 0 2 SLC2A10 chr20:45355625 5'GT 45355625 Upstream 28bp
chr20 45355597 45355597 1 + C T BLCA 45355594 + 45355574 45355614 41 TTCAACTGGGCGGCCAACCTCTTCATCAGCCTCTCCTTCCT TTCAACTGGGCGGCCAACCTCTTTATCAGCCTCTCCTTCCT < 41bp 0.721572067997984 0.496187580604071 0.05563411 0.021444589 prediction 0.443144135995967 Functional Loss - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45355594 chr20:45355597 synonymous SNV . 0 24 hm5C_associated_SNPs_80788 0 0 0 0 2 SLC2A10 chr20:45355503 3'AG 45355503 Downstream 95bp
chr20 45355597 45355597 1 + C T BLCA 45355594 + 45355574 45355614 41 TTCAACTGGGCGGCCAACCTCTTCATCAGCCTCTCCTTCCT TTCAACTGGGCGGCCAACCTCTTTATCAGCCTCTCCTTCCT < 41bp 0.721572067997984 0.496187580604071 0.05563411 0.021444589 prediction 0.443144135995967 Functional Loss - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45355594 chr20:45355597 synonymous SNV . 0 24 hm5C_associated_SNPs_80788 0 0 0 0 2 SLC2A10 chr20:45355625 5'GT 45355625 Upstream 29bp
chr12 111744894 111744894 1 + C T rs527685575 111744892 + 111744872 111744912 41 GCCGACCTGGAGCGGCAGCTCACGGCCAAGTCCGAGGCCAT GCCGACCTGGAGCGGCAGCTCATGGCCAAGTCCGAGGCCAT < 41bp 0.721565880385454 0.466260408989807 0.60603195 0.26915038 prediction 0.443131760770909 Functional Loss - CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744892 chr12:111744894 nonsynonymous SNV 0.951 2 23 hm5C_associated_SNPs_80791 0 0 0 0 1 CUX2 chr12:111744916 5'GT 111744916 Upstream 23bp
chr8 15517056 15517056 1 + C T SKCM 15517053 + 15517033 15517073 41 TCCTACATTCATGCATTTTCCTCCAAAAGGCAGACCTAAGA TCCTACATTCATGCATTTTCCTCTAAAAGGCAGACCTAAGA < 41bp 0.770140781950338 0.548575402265859 0.9654387 0.9422401 prediction 0.443130759368957 Functional Loss - TUSC3 ENSG00000104723 CDS Human protein_coding chr8:15517053 chr8:15517056 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_80792 0 0 1 1 1 TUSC3 chr8:15517016 3'AG 15517016 Downstream 41bp
chr4 153791999 153791999 1 + A T LUAD 153791995 + 153791975 153792015 41 AGGAAGTGATTTAATTGTTCCTGCAGGTATTCACTGCACTG AGGAAGTGATTTAATTGTTCCTGCTGGTATTCACTGCACTG < 41bp 0.721564992353044 0.397689843483836 0.21380761 0.11362395 prediction 0.443129984706089 Functional Loss - ARFIP1 ENSG00000164144 CDS Human protein_coding chr4:153791995 chr4:153791999 synonymous SNV . 0 25 hm5C_associated_SNPs_80793 0 0 1 0 2 ARFIP1 chr4:153791905 3'AG 153791905 Downstream 95bp
chr4 153791999 153791999 1 + A T LUAD 153791995 + 153791975 153792015 41 AGGAAGTGATTTAATTGTTCCTGCAGGTATTCACTGCACTG AGGAAGTGATTTAATTGTTCCTGCTGGTATTCACTGCACTG < 41bp 0.721564992353044 0.397689843483836 0.21380761 0.11362395 prediction 0.443129984706089 Functional Loss - ARFIP1 ENSG00000164144 CDS Human protein_coding chr4:153791995 chr4:153791999 synonymous SNV . 0 25 hm5C_associated_SNPs_80793 0 0 1 0 2 ARFIP1 chr4:153792000 5'GT 153792000 Upstream 2bp
chr9 71687595 71687595 1 + G T GBM 71687592 + 71687572 71687612 41 CCCACGACGGCGTGTCCCTCCATGAGCTGCTGGCCGCAGAG CCCACGACGGCGTGTCCCTCCATTAGCTGCTGGCCGCAGAG < 41bp 0.721564767703285 0.341520012348541 0.39778477 0.08148867 prediction 0.44312953540657 Functional Loss - FXN ENSG00000165060 CDS Human protein_coding chr9:71687592 chr9:71687595 stopgain 0.996 1 24 hm5C_associated_SNPs_80794 0 0 1 0 1 FXN chr9:71687528 3'AG 71687528 Downstream 68bp
chr11 18478266 18478266 1 + G A LAML 18478263 + 18478243 18478283 41 AGTGAACTTATTAAGAATTTCGCGGAAGAGGAGGCCATTCA AGTGAACTTATTAAGAATTTCGCAGAAGAGGAGGCCATTCA < 41bp 0.764371026951515 0.542806386503592 0.31653637 0.23051897 prediction 0.443129280895846 Functional Loss - LDHAL6A ENSG00000166800 CDS Human protein_coding chr11:18478263 chr11:18478266 synonymous SNV . 0 24 hm5C_associated_SNPs_80795 0 0 0 0 2 LDHAL6A chr11:18478219 3'AG 18478219 Downstream 48bp
chr11 18478266 18478266 1 + G A LAML 18478263 + 18478243 18478283 41 AGTGAACTTATTAAGAATTTCGCGGAAGAGGAGGCCATTCA AGTGAACTTATTAAGAATTTCGCAGAAGAGGAGGCCATTCA < 41bp 0.764371026951515 0.542806386503592 0.31653637 0.23051897 prediction 0.443129280895846 Functional Loss - LDHAL6A ENSG00000166800 CDS Human protein_coding chr11:18478263 chr11:18478266 synonymous SNV . 0 24 hm5C_associated_SNPs_80795 0 0 0 0 2 LDHAL6A chr11:18478353 5'GT 18478353 Upstream 88bp
chr7 64649502 64649502 1 + G A SKCM 64649499 + 64649479 64649519 41 CTCAGGGAGCCCAGGAGCTGCTGGAATTCACCATCAGGTAG CTCAGGGAGCCCAGGAGCTGCTGAAATTCACCATCAGGTAG < 41bp 0.726474161853709 0.504909528031643 0.7608677 0.62706083 prediction 0.443129267644132 Functional Loss - INTS4P1 ENSG00000164669 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64649499 chr7:64649502 . . 0 24 hm5C_associated_SNPs_80796 0 0 0 0 1 INTS4P1 chr7:64649515 5'GT 64649515 Upstream 14bp
chr16 30522394 30522394 1 + T C GBM 30522393 + 30522373 30522413 41 ACAATGAGGACTCAGACCTCCTGGAGGACAACTCAGCCACT ACAATGAGGACTCAGACCTCCCGGAGGACAACTCAGCCACT < 41bp 0.721553724472115 0.469245892992377 0.7425304 0.7450313 prediction 0.443107448944231 Functional Loss - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30522393 chr16:30522394 nonsynonymous SNV 0.940 2 22 hm5C_associated_SNPs_80798 0 0 0 0 2 ITGAL chr16:30522371 3'AG 30522371 Downstream 24bp
chr16 30522394 30522394 1 + T C GBM 30522393 + 30522373 30522413 41 ACAATGAGGACTCAGACCTCCTGGAGGACAACTCAGCCACT ACAATGAGGACTCAGACCTCCCGGAGGACAACTCAGCCACT < 41bp 0.721553724472115 0.469245892992377 0.7425304 0.7450313 prediction 0.443107448944231 Functional Loss - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30522393 chr16:30522394 nonsynonymous SNV 0.940 2 22 hm5C_associated_SNPs_80798 0 0 0 0 2 ITGAL chr16:30522457 5'GT 30522457 Upstream 64bp
chr16 30522395 30522395 1 + G T LUSC 30522393 + 30522373 30522413 41 ACAATGAGGACTCAGACCTCCTGGAGGACAACTCAGCCACT ACAATGAGGACTCAGACCTCCTTGAGGACAACTCAGCCACT < 41bp 0.721553724472115 0.376974647558601 0.7425304 0.06977576 prediction 0.443107448944231 Functional Loss - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30522393 chr16:30522395 synonymous SNV . 0 23 hm5C_associated_SNPs_80799 0 0 0 0 2 ITGAL chr16:30522371 3'AG 30522371 Downstream 25bp
chr16 30522395 30522395 1 + G T LUSC 30522393 + 30522373 30522413 41 ACAATGAGGACTCAGACCTCCTGGAGGACAACTCAGCCACT ACAATGAGGACTCAGACCTCCTTGAGGACAACTCAGCCACT < 41bp 0.721553724472115 0.376974647558601 0.7425304 0.06977576 prediction 0.443107448944231 Functional Loss - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30522393 chr16:30522395 synonymous SNV . 0 23 hm5C_associated_SNPs_80799 0 0 0 0 2 ITGAL chr16:30522457 5'GT 30522457 Upstream 63bp
chr2 132110630 132110630 1 + C T BRCA 132110628 + 132110608 132110648 41 GGTCCCAAAATACACACCACCACGAGTGCAAAAACCCAGGC GGTCCCAAAATACACACCACCATGAGTGCAAAAACCCAGGC < 41bp 0.770571222779636 0.54902002779697 0.054931194 0.063001454 prediction 0.443102389965333 Functional Loss - LOC440910;WTH3DI ENSG00000115762 CDS Human protein_coding chr2:132110628 chr2:132110630 nonsynonymous SNV 0.336 2 23 hm5C_associated_SNPs_80804 0 0 0 0 1 LOC440910;WTH3DI chr2:132110593 3'AG 132110593 Downstream 38bp
chrX 35974120 35974120 1 + G A SKCM 35974117 + 35974097 35974137 41 GGAATTAGCACTGACAGGCACAGGACTTCCTGTTTTACTAC GGAATTAGCACTGACAGGCACAGAACTTCCTGTTTTACTAC < 41bp 0.721551001352478 0.483434985413429 0.53567225 0.16929471 prediction 0.443102002704956 Functional Loss - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35974117 chrX:35974120 nonsynonymous SNV 0.546 4 24 hm5C_associated_SNPs_80805 0 0 0 0 1 CFAP47 chrX:35974078 3'AG 35974078 Downstream 43bp
chr19 51770716 51770716 1 + A T LUSC 51770712 + 51770692 51770732 41 AAGTCAGAGCAAGCCAAGAACTTGAGATGTCTCTGAAGCCT AAGTCAGAGCAAGCCAAGAACTTGTGATGTCTCTGAAGCCT < 41bp 0.721550531986774 0.396010063929602 0.11290938 0.15016198 prediction 0.443101063973548 Functional Loss - SIGLECL1 ENSG00000179213 CDS Human protein_coding chr19:51770712 chr19:51770716 nonsynonymous SNV 0.008 1 25 hm5C_associated_SNPs_80806 0 0 0 0 1 SIGLECL1 chr19:51770783 5'GT 51770783 Upstream 68bp
chr4 56734583 56734583 1 + G A UCEC 56734580 + 56734560 56734600 41 TGAATACCAAGAGTTAAATGCAAGAGAAGAACAGGATATCG TGAATACCAAGAGTTAAATGCAAAAGAAGAACAGGATATCG < 41bp 0.730463111311457 0.50891703965372 0.4569084 0.2774461 prediction 0.443092143315475 Functional Loss - EXOC1 ENSG00000090989 CDS Human protein_coding chr4:56734580 chr4:56734583 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_80809 0 0 1 0 1 EXOC1 chr4:56734502 3'AG 56734502 Downstream 82bp
chr20 2844645 2844645 1 + G A LUSC 2844642 + 2844622 2844662 41 GATGTGGCTCGAGCCATTAACCAGAAGCTGGGGGACACGCC GATGTGGCTCGAGCCATTAACCAAAAGCTGGGGGACACGCC < 41bp 0.785978716469437 0.564434598038263 0.7956487 0.13735056 prediction 0.443088236862347 Functional Loss - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2844642 chr20:2844645 synonymous SNV . 0 24 hm5C_associated_SNPs_80810 0 0 0 0 2 VPS16 chr20:2844595 3'AG 2844595 Downstream 51bp
chr20 2844645 2844645 1 + G A LUSC 2844642 + 2844622 2844662 41 GATGTGGCTCGAGCCATTAACCAGAAGCTGGGGGACACGCC GATGTGGCTCGAGCCATTAACCAAAAGCTGGGGGACACGCC < 41bp 0.785978716469437 0.564434598038263 0.7956487 0.13735056 prediction 0.443088236862347 Functional Loss - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2844642 chr20:2844645 synonymous SNV . 0 24 hm5C_associated_SNPs_80810 0 0 0 0 2 VPS16 chr20:2844729 5'GT 2844729 Upstream 85bp
chr1 156873814 156873814 1 + G A SKCM 156873811 + 156873791 156873831 41 GATCCCAATACCTGCAGCTTCTGGGAAAGGTGAGAGGGCCC GATCCCAATACCTGCAGCTTCTGAGAAAGGTGAGAGGGCCC < 41bp 0.721542083828562 0.48555111035345 0.43672043 0.31132984 prediction 0.443084167657125 Functional Loss - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156873811 chr1:156873814 stopgain 1.000 1 24 hm5C_associated_SNPs_80812 0 0 0 0 1 PEAR1 chr1:156873819 5'GT 156873819 Upstream 6bp
chr10 38299703 38299703 1 + G A rs577416013 38299700 + 38299680 38299720 41 CTATGGCGAATGCAACCCGACGAGGGAGTGGGGTAAGCCCC CTATGGCGAATGCAACCCGACGAAGGAGTGGGGTAAGCCCC < 41bp 0.732162683614484 0.510624974097874 0.37039196 0.14128962 prediction 0.443075419033219 Functional Loss - ZNF33A ENSG00000189180 CDS Human protein_coding chr10:38299700 chr10:38299703 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_80815 0 0 1 0 1 ZNF33A chr10:38299711 5'GT 38299711 Upstream 9bp
chr6 26468258 26468258 1 + C T CESC 26468255 + 26468235 26468275 41 AGAAGTGTGAGAAGGTGCCCCTTCAGGCACCTAGGGGAGAG AGAAGTGTGAGAAGGTGCCCCTTTAGGCACCTAGGGGAGAG < 41bp 0.725156649706893 0.50362109150964 0.304235 0.28375793 prediction 0.443071116394506 Functional Loss - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26468255 chr6:26468258 synonymous SNV . 0 24 hm5C_associated_SNPs_80817 0 0 1 0 1 BTN2A1 chr6:26468176 3'AG 26468176 Downstream 83bp
chr1 197889121 197889121 1 + C T UCEC 197889119 + 197889099 197889139 41 CAGGGCATGCCCCCGCTCAGCCCGGAGAAGCCCGCCCTGTG CAGGGCATGCCCCCGCTCAGCCTGGAGAAGCCCGCCCTGTG < 41bp 0.826598784595383 0.6050713005753 0.8316523 0.7137365 prediction 0.443054968040166 Functional Loss - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197889119 chr1:197889121 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_80819 0 0 0 0 1 LHX9 chr1:197889102 3'AG 197889102 Downstream 20bp
chr1 220978575 220978575 1 + C T UCEC 220978572 + 220978552 220978592 41 TTAACCACAGTGGACCCAGACACCGGTGTCATGAGCAGGAA TTAACCACAGTGGACCCAGACACTGGTGTCATGAGCAGGAA < 41bp 0.721527239904541 0.491115571309537 0.08912739 0.07867497 prediction 0.443054479809081 Functional Loss - MARC1 ENSG00000186205 CDS Human protein_coding chr1:220978572 chr1:220978575 synonymous SNV . 0 24 hm5C_associated_SNPs_80820 0 0 1 0 2 MARC1 chr1:220978545 3'AG 220978545 Downstream 31bp
chr1 220978575 220978575 1 + C T UCEC 220978572 + 220978552 220978592 41 TTAACCACAGTGGACCCAGACACCGGTGTCATGAGCAGGAA TTAACCACAGTGGACCCAGACACTGGTGTCATGAGCAGGAA < 41bp 0.721527239904541 0.491115571309537 0.08912739 0.07867497 prediction 0.443054479809081 Functional Loss - MARC1 ENSG00000186205 CDS Human protein_coding chr1:220978572 chr1:220978575 synonymous SNV . 0 24 hm5C_associated_SNPs_80820 0 0 1 0 2 MARC1 chr1:220978616 5'GT 220978616 Upstream 42bp
chr2 71783195 71783195 1 + G T TGCT 71783192 + 71783172 71783212 41 GCTGACGGATGAGCTCATCGCAGGCTGCAGGTAGGGGGGAC GCTGACGGATGAGCTCATCGCAGTCTGCAGGTAGGGGGGAC < 41bp 0.721517235171251 0.383443375971542 0.8107543 0.5495001 prediction 0.443034470342503 Functional Loss - DYSF ENSG00000135636 CDS Human protein_coding chr2:71783192 chr2:71783195 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_80825 0 0 0 0 1 DYSF chr2:71783201 5'GT 71783201 Upstream 7bp
chr15 91478859 91478859 1 + A C LIHC 91478858 + 91478838 91478878 41 GCGCCCTGGCGGCCTACACTCAGGCCCTGGGTCTGGACGCG GCGCCCTGGCGGCCTACACTCCGGCCCTGGGTCTGGACGCG < 41bp 0.822284014324809 0.600767485292131 0.9216077 0.89064825 prediction 0.443033058065356 Functional Loss - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91478858 chr15:91478859 nonsynonymous SNV 0.984 1 22 hm5C_associated_SNPs_80826 0 0 1 0 2 UNC45A chr15:91478774 3'AG 91478774 Downstream 86bp
chr15 91478859 91478859 1 + A C LIHC 91478858 + 91478838 91478878 41 GCGCCCTGGCGGCCTACACTCAGGCCCTGGGTCTGGACGCG GCGCCCTGGCGGCCTACACTCCGGCCCTGGGTCTGGACGCG < 41bp 0.822284014324809 0.600767485292131 0.9216077 0.89064825 prediction 0.443033058065356 Functional Loss - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91478858 chr15:91478859 nonsynonymous SNV 0.984 1 22 hm5C_associated_SNPs_80826 0 0 1 0 2 UNC45A chr15:91478935 5'GT 91478935 Upstream 77bp
chr2 100007095 100007095 1 + G T STAD 100007092 + 100007072 100007112 41 AGGAGATACAATCATTGTTCCTGGAGTAGAAGGGCCCATTG AGGAGATACAATCATTGTTCCTGTAGTAGAAGGGCCCATTG < 41bp 0.921886257614488 0.700372241337348 0.34604412 0.1868076 prediction 0.443028032554279 Functional Loss - EIF5B ENSG00000158417 CDS Human protein_coding chr2:100007092 chr2:100007095 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_80829 0 0 1 0 2 EIF5B chr2:100007007 3'AG 100007007 Downstream 89bp
chr2 100007095 100007095 1 + G T STAD 100007092 + 100007072 100007112 41 AGGAGATACAATCATTGTTCCTGGAGTAGAAGGGCCCATTG AGGAGATACAATCATTGTTCCTGTAGTAGAAGGGCCCATTG < 41bp 0.921886257614488 0.700372241337348 0.34604412 0.1868076 prediction 0.443028032554279 Functional Loss - EIF5B ENSG00000158417 CDS Human protein_coding chr2:100007092 chr2:100007095 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_80829 0 0 1 0 2 EIF5B chr2:100007168 5'GT 100007168 Upstream 74bp
chr1 150956491 150956491 1 + G A SKCM 150956488 + 150956468 150956508 41 ATTGTGGACGTGCTGACCAACCGGAGCAGAGAGCAAAGGCA ATTGTGGACGTGCTGACCAACCGAAGCAGAGAGCAAAGGCA < 41bp 0.766631461104326 0.545118105429561 0.8211119 0.81232584 prediction 0.443026711349529 Functional Loss - ANXA9 ENSG00000143412 CDS Human protein_coding chr1:150956488 chr1:150956491 synonymous SNV . 0 24 hm5C_associated_SNPs_80830 0 0 0 0 2 ANXA9 chr1:150956451 3'AG 150956451 Downstream 41bp
chr1 150956491 150956491 1 + G A SKCM 150956488 + 150956468 150956508 41 ATTGTGGACGTGCTGACCAACCGGAGCAGAGAGCAAAGGCA ATTGTGGACGTGCTGACCAACCGAAGCAGAGAGCAAAGGCA < 41bp 0.766631461104326 0.545118105429561 0.8211119 0.81232584 prediction 0.443026711349529 Functional Loss - ANXA9 ENSG00000143412 CDS Human protein_coding chr1:150956488 chr1:150956491 synonymous SNV . 0 24 hm5C_associated_SNPs_80830 0 0 0 0 2 ANXA9 chr1:150956545 5'GT 150956545 Upstream 55bp
chr11 3685380 3685380 1 + C T rs36041658 3685378 + 3685358 3685398 41 TGCTGCTGCTGCTCTGGTTCCTCGTGGTGAGGGCCTTTCCA TGCTGCTGCTGCTCTGGTTCCTTGTGGTGAGGGCCTTTCCA < 41bp 0.721510158865397 0.455129259272565 0.2983058 0.1488784 prediction 0.443020317730795 Functional Loss - ART1 ENSG00000129744 CDS Human protein_coding chr11:3685378 chr11:3685380 synonymous SNV . 0 23 hm5C_associated_SNPs_80831 0 0 0 0 1 ART1 chr11:3685322 3'AG 3685322 Downstream 59bp
chr1 168550371 168550371 1 + G T GBM 168550368 + 168550348 168550388 41 GACGTGGTCAGGAGCATGGACAGGAAATCCAACACCAGAAA GACGTGGTCAGGAGCATGGACAGTAAATCCAACACCAGAAA < 41bp 0.925927212339918 0.704417175192527 0.72077155 0.30199206 prediction 0.443020074294781 Functional Loss - XCL1 ENSG00000143184 CDS Human protein_coding chr1:168550368 chr1:168550371 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_80832 0 0 0 0 1 XCL1 chr1:168550290 3'AG 168550290 Downstream 82bp
chr1 93300390 93300390 1 + G A COAD 93300387 + 93300367 93300407 41 TAGTCTGCGCAGCGTATGCACACGAACTGCCAAAATATGGT TAGTCTGCGCAGCGTATGCACACAAACTGCCAAAATATGGT < 41bp 0.753088357261501 0.531584320420447 0.23429728 0.14599857 prediction 0.443008073682107 Functional Loss - RPL5 ENSG00000122406 CDS Human protein_coding chr1:93300387 chr1:93300390 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_80834 0 0 1 3 1 RPL5 chr1:93300336 3'AG 93300336 Downstream 55bp
chr1 234041443 234041443 1 + G T UCEC 234041440 + 234041420 234041460 41 CCGGTGGGGCTCACGTCCATCGAGGAGCGGATCCTGCGCAT CCGGTGGGGCTCACGTCCATCGATGAGCGGATCCTGCGCAT < 41bp 0.920022462682066 0.698519372700041 0.9392036 0.32025087 prediction 0.443006179964048 Functional Loss - SLC35F3 ENSG00000183780 CDS Human protein_coding chr1:234041440 chr1:234041443 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_80836 0 0 0 0 1 SLC35F3 chr1:234041504 5'GT 234041504 Upstream 62bp
chr12 120527791 120527791 1 + G A rs2286041 120527788 + 120527768 120527808 41 GAGCTGGAACTTGCCAAGTGCAGGATGGATATGATGTCTCT GAGCTGGAACTTGCCAAGTGCAGAATGGATATGATGTCTCT < 41bp 0.721502719460026 0.488734097246682 0.31368774 0.10766825 prediction 0.443005438920053 Functional Loss - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120527788 chr12:120527791 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_80837 0 0 0 0 2 BICDL1 chr12:120527755 3'AG 120527755 Downstream 37bp
chr12 120527791 120527791 1 + G A rs2286041 120527788 + 120527768 120527808 41 GAGCTGGAACTTGCCAAGTGCAGGATGGATATGATGTCTCT GAGCTGGAACTTGCCAAGTGCAGAATGGATATGATGTCTCT < 41bp 0.721502719460026 0.488734097246682 0.31368774 0.10766825 prediction 0.443005438920053 Functional Loss - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120527788 chr12:120527791 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_80837 0 0 0 0 2 BICDL1 chr12:120527875 5'GT 120527875 Upstream 85bp
chr12 120527790 120527790 1 + G T UCEC 120527788 + 120527768 120527808 41 GAGCTGGAACTTGCCAAGTGCAGGATGGATATGATGTCTCT GAGCTGGAACTTGCCAAGTGCATGATGGATATGATGTCTCT < 41bp 0.721502719460026 0.376623168008544 0.31368774 0.13856068 prediction 0.443005438920053 Functional Loss - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120527788 chr12:120527790 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_80838 0 0 0 0 2 BICDL1 chr12:120527755 3'AG 120527755 Downstream 36bp
chr12 120527790 120527790 1 + G T UCEC 120527788 + 120527768 120527808 41 GAGCTGGAACTTGCCAAGTGCAGGATGGATATGATGTCTCT GAGCTGGAACTTGCCAAGTGCATGATGGATATGATGTCTCT < 41bp 0.721502719460026 0.376623168008544 0.31368774 0.13856068 prediction 0.443005438920053 Functional Loss - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120527788 chr12:120527790 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_80838 0 0 0 0 2 BICDL1 chr12:120527875 5'GT 120527875 Upstream 86bp
chr10 43600449 43600449 1 + G A LIHC 43600446 + 43600426 43600466 41 CCGGACAGCCTGGAGGTGAGCACGCGCTGGGCCCTGGACCG CCGGACAGCCTGGAGGTGAGCACACGCTGGGCCCTGGACCG < 41bp 0.805143138283492 0.583645279104808 0.48503226 0.14395955 prediction 0.442995718357369 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43600446 chr10:43600449 synonymous SNV . 0 24 hm5C_associated_SNPs_80840 0 0 0 0 1 RET chr10:43600400 3'AG 43600400 Downstream 50bp
chr2 33003003 33003003 1 + G A SKCM 33003000 + 33002980 33003020 41 ATTTGGCCTTGGAAGACTATCAAGGTTCAGCAAAGGCATTT ATTTGGCCTTGGAAGACTATCAAAGTTCAGCAAAGGCATTT < 41bp 0.721496272694916 0.496949845951901 0.9382942 0.80197704 prediction 0.442992545389831 Functional Loss - TTC27 ENSG00000018699 CDS Human protein_coding chr2:33003000 chr2:33003003 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_80843 0 0 0 1 2 TTC27 chr2:33002949 3'AG 33002949 Downstream 55bp
chr2 33003003 33003003 1 + G A SKCM 33003000 + 33002980 33003020 41 ATTTGGCCTTGGAAGACTATCAAGGTTCAGCAAAGGCATTT ATTTGGCCTTGGAAGACTATCAAAGTTCAGCAAAGGCATTT < 41bp 0.721496272694916 0.496949845951901 0.9382942 0.80197704 prediction 0.442992545389831 Functional Loss - TTC27 ENSG00000018699 CDS Human protein_coding chr2:33003000 chr2:33003003 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_80843 0 0 0 1 2 TTC27 chr2:33003047 5'GT 33003047 Upstream 45bp
chr12 52115620 52115620 1 + G A STAD 52115617 + 52115597 52115637 41 CGCAGCGTGAAGCGCAACAGCACGGTGGACTGCAACGGCGT CGCAGCGTGAAGCGCAACAGCACAGTGGACTGCAACGGCGT < 41bp 0.721494590284338 0.47847775663935 0.4825054 0.35062516 prediction 0.442989180568677 Functional Loss - SCN8A ENSG00000196876 CDS Human protein_coding chr12:52115617 chr12:52115620 synonymous SNV . 0 24 hm5C_associated_SNPs_80844 0 0 0 0 1 SCN8A chr12:52115692 5'GT 52115692 Upstream 73bp
chr7 30651839 30651839 1 + C T BLCA 30651837 + 30651817 30651857 41 TTTTAGAAATGAGATCTCCCCTCGATCTGGACTGATCAGAG TTTTAGAAATGAGATCTCCCCTTGATCTGGACTGATCAGAG < 41bp 0.868148355113709 0.646654913613106 0.7741998 0.035171986 prediction 0.442986883001206 Functional Loss - GARS ENSG00000106105 CDS Human protein_coding chr7:30651837 chr7:30651839 stopgain 1.000 1 23 hm5C_associated_SNPs_80845 0 0 1 0 1 GARS chr7:30651861 5'GT 30651861 Upstream 23bp
chr19 10568589 10568589 1 + G A SKCM 10568586 + 10568566 10568606 41 GAAGTGGAGATCCCATCACCCACGATGAAGGAACGAGAAAA GAAGTGGAGATCCCATCACCCACAATGAAGGAACGAGAAAA < 41bp 0.721492098188559 0.479587143269802 0.115157425 0.07383677 prediction 0.442984196377118 Functional Loss - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10568586 chr19:10568589 synonymous SNV . 0 24 hm5C_associated_SNPs_80847 0 0 1 0 1 PDE4A chr19:10568555 3'AG 10568555 Downstream 35bp
chr17 32598732 32598732 1 + G T SARC 32598729 + 32598709 32598749 41 TCCACAGCTTCAAGACCAAACTGGACAAGGAGATCTGTGCT TCCACAGCTTCAAGACCAAACTGTACAAGGAGATCTGTGCT < 41bp 0.893129938855546 0.671647309066478 0.19761029 0.121002585 prediction 0.442965259578136 Functional Loss - CCL7 ENSG00000108688 CDS Human protein_coding chr17:32598729 chr17:32598732 nonsynonymous SNV 0.054 1 24 hm5C_associated_SNPs_80851 0 0 0 1 1 CCL7 chr17:32598716 3'AG 32598716 Downstream 17bp
chr16 56717214 56717214 1 + G A rs111606576 56717211 + 56717191 56717231 41 GCAGGGAACCCAGAGCTCTGCAGGCAGGGGCAGGCCAATGA GCAGGGAACCCAGAGCTCTGCAGACAGGGGCAGGCCAATGA < 41bp 0.794209007272865 0.572729998922597 0.2717601 0.1508801 prediction 0.442958016700536 Functional Loss - MT1X ENSG00000259827 ncRNA_exonic Human protein_coding chr16:56717211 chr16:56717214 . . 0 24 hm5C_associated_SNPs_80856 0 0 0 0 2 MT1X chr16:56717142 3'AG 56717142 Downstream 73bp
chr16 56717214 56717214 1 + G A rs111606576 56717211 + 56717191 56717231 41 GCAGGGAACCCAGAGCTCTGCAGGCAGGGGCAGGCCAATGA GCAGGGAACCCAGAGCTCTGCAGACAGGGGCAGGCCAATGA < 41bp 0.794209007272865 0.572729998922597 0.2717601 0.1508801 prediction 0.442958016700536 Functional Loss - MT1X ENSG00000259827 ncRNA_exonic Human processed_transcript chr16:56717211 chr16:56717214 . . 0 24 hm5C_associated_SNPs_80856 0 0 0 0 2 MT1X chr16:56717298 5'GT 56717298 Upstream 85bp
chr7 117824239 117824239 1 + G C rs2896242 117824238 + 117824218 117824258 41 CTTTCAGTTCTGCTTGCTGTCGGCACCGCTGCGTTACCCGG CTTTCAGTTCTGCTTGCTGTCCGCACCGCTGCGTTACCCGG < 41bp 0.72407395839516 0.502595223023719 0.691463 0.037896395 prediction 0.442957470742882 Functional Loss - LSM8 ENSG00000128534 UTR5 Human protein_coding chr7:117824238 chr7:117824239 . . 0 22 hm5C_associated_SNPs_80857 0 0 1 0 1 LSM8 chr7:117824308 5'GT 117824308 Upstream 70bp
chr17 29298451 29298451 1 + G A rs7224960 29298448 + 29298428 29298468 41 GCCGCGAGGCCCCGGCGCCGCCCGGAACTGCAGCGGGTAGG GCCGCGAGGCCCCGGCGCCGCCCAGAACTGCAGCGGGTAGG < 41bp 0.789951709069959 0.568473397766537 0.4382996 0.30012405 prediction 0.442956622606844 Functional Loss - RNF135 ENSG00000181481 CDS Human protein_coding chr17:29298448 chr17:29298451 synonymous SNV . 0 24 hm5C_associated_SNPs_80858 0 0 0 0 1 RNF135 chr17:29298463 5'GT 29298463 Upstream 13bp
chr1 50666594 50666594 1 + G A OV 50666591 + 50666571 50666611 41 CATCCCTGGTCACACAGGAACTGGGTGGTGCATCTTTGTCT CATCCCTGGTCACACAGGAACTGAGTGGTGCATCTTTGTCT < 41bp 0.759817117971408 0.538341975585183 0.44101256 0.2191405 prediction 0.442950284772451 Functional Loss - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50666591 chr1:50666594 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_80859 0 0 0 0 1 ELAVL4 chr1:50666523 3'AG 50666523 Downstream 72bp
chr9 96416716 96416716 1 + A C KIRP 96416715 + 96416695 96416735 41 GGGGAGAAGACCTTCTATCTCATCAGGCCGGCCTCGGCCAA GGGGAGAAGACCTTCTATCTCCTCAGGCCGGCCTCGGCCAA < 41bp 0.818340492432986 0.59686573101883 0.21997681 0.17334232 prediction 0.442949522828312 Functional Loss - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96416715 chr9:96416716 nonsynonymous SNV 0.977 4 22 hm5C_associated_SNPs_80860 0 0 1 0 1 PHF2 chr9:96416695 3'AG 96416695 Downstream 22bp
chr9 139972219 139972219 1 + G C rs4073310 139972218 + 139972198 139972238 41 CGGCCCCTGCCCCCAGAGCGCGTGGGCAGGGCCAGCCGCAG CGGCCCCTGCCCCCAGAGCGCCTGGGCAGGGCCAGCCGCAG < 41bp 0.870361614626075 0.648891591451075 0.70743906 0.18890068 prediction 0.44294004635 Functional Loss - UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139972218 chr9:139972219 nonsynonymous SNV 0.628 0 22 hm5C_associated_SNPs_80862 0 0 0 0 1 UAP1L1 chr9:139972273 5'GT 139972273 Upstream 55bp
chr18 29122725 29122725 1 + A C SARC 29122724 + 29122704 29122744 41 CACTGAAACCACGAAGACCGCAAGGGCCACAGGGGCTTCCA CACTGAAACCACGAAGACCGCCAGGGCCACAGGGGCTTCCA < 41bp 0.834795245921332 0.613331399826392 0.8570243 0.8879907 prediction 0.442927692189881 Functional Loss - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29122724 chr18:29122725 synonymous SNV . 0 22 hm5C_associated_SNPs_80865 0 0 1 0 1 DSG2 chr18:29122815 5'GT 29122815 Upstream 91bp
chr18 50994304 50994304 1 + G T SARC 50994302 + 50994282 50994322 41 CAGGGAGCTCTATGTCCACTCTGGAGAGGTCGCTGGCTGCA CAGGGAGCTCTATGTCCACTCTTGAGAGGTCGCTGGCTGCA < 41bp 0.721462159370234 0.488953384496714 0.3957044 0.096640736 prediction 0.442924318740467 Functional Loss - DCC ENSG00000187323 CDS Human protein_coding chr18:50994302 chr18:50994304 synonymous SNV . 0 23 hm5C_associated_SNPs_80867 0 0 0 0 2 DCC chr18:50994264 3'AG 50994264 Downstream 41bp
chr18 50994304 50994304 1 + G T SARC 50994302 + 50994282 50994322 41 CAGGGAGCTCTATGTCCACTCTGGAGAGGTCGCTGGCTGCA CAGGGAGCTCTATGTCCACTCTTGAGAGGTCGCTGGCTGCA < 41bp 0.721462159370234 0.488953384496714 0.3957044 0.096640736 prediction 0.442924318740467 Functional Loss - DCC ENSG00000187323 CDS Human protein_coding chr18:50994302 chr18:50994304 synonymous SNV . 0 23 hm5C_associated_SNPs_80867 0 0 0 0 2 DCC chr18:50994380 5'GT 50994380 Upstream 77bp
chr1 160322702 160322702 1 + C T UCEC 160322700 + 160322680 160322720 41 ACTTTTGACTACATTGGCAGCTCGAGGATGGTCTACGATAT ACTTTTGACTACATTGGCAGCTTGAGGATGGTCTACGATAT < 41bp 0.866841665109053 0.64538316034889 0.071054876 0.060725242 prediction 0.442917009520326 Functional Loss - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160322700 chr1:160322702 nonsynonymous SNV 0.895 4 23 hm5C_associated_SNPs_80873 0 0 0 0 2 NCSTN chr1:160322677 3'AG 160322677 Downstream 26bp
chr1 160322702 160322702 1 + C T UCEC 160322700 + 160322680 160322720 41 ACTTTTGACTACATTGGCAGCTCGAGGATGGTCTACGATAT ACTTTTGACTACATTGGCAGCTTGAGGATGGTCTACGATAT < 41bp 0.866841665109053 0.64538316034889 0.071054876 0.060725242 prediction 0.442917009520326 Functional Loss - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160322700 chr1:160322702 nonsynonymous SNV 0.895 4 23 hm5C_associated_SNPs_80873 0 0 0 0 2 NCSTN chr1:160322781 5'GT 160322781 Upstream 80bp
chr6 41011722 41011722 1 + C T BRCA 41011720 + 41011700 41011740 41 CTGTATGGGCTGGTGGTGAGCACAGCACTGATCTGGCATCC CTGTATGGGCTGGTGGTGAGCATAGCACTGATCTGGCATCC < 41bp 0.813340211037651 0.591881862846505 0.33856195 0.33840567 prediction 0.442916696382292 Functional Loss - TSPO2 ENSG00000112212 CDS Human protein_coding chr6:41011720 chr6:41011722 nonsynonymous SNV 0.222 0 23 hm5C_associated_SNPs_80874 0 0 0 0 1 TSPO2 chr6:41011679 3'AG 41011679 Downstream 44bp
chr17 4789241 4789241 1 + G A BLCA 4789238 + 4789218 4789258 41 TCTCTAGGAATCACAGCCATCGAGATGGCAGAGGGAGCCCC TCTCTAGGAATCACAGCCATCGAAATGGCAGAGGGAGCCCC < 41bp 0.73331030489444 0.511852850313607 0.5590542 0.29567263 prediction 0.442914909161666 Functional Loss - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4789238 chr17:4789241 synonymous SNV . 0 24 hm5C_associated_SNPs_80876 0 0 1 0 1 MINK1 chr17:4789260 5'GT 4789260 Upstream 20bp
chr7 143042693 143042693 1 + G A UCEC 143042690 + 143042670 143042710 41 CGCCACCTGTGTCCTGAGCGCAGGCTGCGCGCAGCCCAAGA CGCCACCTGTGTCCTGAGCGCAGACTGCGCGCAGCCCAAGA < 41bp 0.721455631539536 0.467792398330804 0.7419976 0.17045787 prediction 0.442911263079072 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143042690 chr7:143042693 synonymous SNV . 0 24 hm5C_associated_SNPs_80879 0 0 0 0 1 CLCN1 chr7:143042614 3'AG 143042614 Downstream 80bp
chr12 113727975 113727975 1 + C T UCEC 113727972 + 113727952 113727992 41 GCCTACCGCTGGCGCAACCACACCGTGGGCAACAGGACCGT GCCTACCGCTGGCGCAACCACACTGTGGGCAACAGGACCGT < 41bp 0.745509875350015 0.524056474084378 0.1452131 0.10203186 prediction 0.442906802531274 Functional Loss - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113727972 chr12:113727975 synonymous SNV . 0 24 hm5C_associated_SNPs_80882 0 0 1 0 2 TPCN1 chr12:113727933 3'AG 113727933 Downstream 43bp
chr12 113727975 113727975 1 + C T UCEC 113727972 + 113727952 113727992 41 GCCTACCGCTGGCGCAACCACACCGTGGGCAACAGGACCGT GCCTACCGCTGGCGCAACCACACTGTGGGCAACAGGACCGT < 41bp 0.745509875350015 0.524056474084378 0.1452131 0.10203186 prediction 0.442906802531274 Functional Loss - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113727972 chr12:113727975 synonymous SNV . 0 24 hm5C_associated_SNPs_80882 0 0 1 0 2 TPCN1 chr12:113728048 5'GT 113728048 Upstream 74bp
chr6 43613043 43613043 1 + C T COAD 43613041 + 43613021 43613061 41 CCTGAGTGAGGACCAGCTCGCACCGCGCAAGACGCTCTATA CCTGAGTGAGGACCAGCTCGCATCGCGCAAGACGCTCTATA < 41bp 0.754543951761508 0.533092397753576 0.42103538 0.39798868 prediction 0.442903108015865 Functional Loss - RSPH9 ENSG00000172426 CDS Human protein_coding chr6:43613041 chr6:43613043 nonsynonymous SNV 0.987 0 23 hm5C_associated_SNPs_80884 0 0 0 0 1 RSPH9 chr6:43613062 5'GT 43613062 Upstream 20bp
chr20 36361357 36361357 1 + G A UCEC 36361354 + 36361334 36361374 41 GCGTCGGAAACAAACTGGTACTCGAGAACGCGGCCGCTATC GCGTCGGAAACAAACTGGTACTCAAGAACGCGGCCGCTATC < 41bp 0.769384063636378 0.547936163040906 0.88211167 0.84407103 prediction 0.442895801190943 Functional Loss - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36361354 chr20:36361357 nonsynonymous SNV 0.814 2 24 hm5C_associated_SNPs_80887 0 0 1 0 1 CTNNBL1 chr20:36361281 3'AG 36361281 Downstream 77bp
chr22 35804518 35804518 1 + C T STAD 35804516 + 35804496 35804536 41 AGCTGCCTGATGCAGTCCCCCACGGGGAGATGCCCAGACAC AGCTGCCTGATGCAGTCCCCCATGGGGAGATGCCCAGACAC < 41bp 0.806887324266146 0.585441988099946 0.05877617 0.13949305 prediction 0.442890672332401 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35804516 chr22:35804518 synonymous SNV . 0 23 hm5C_associated_SNPs_80890 0 0 1 0 1 MCM5 chr22:35804556 5'GT 35804556 Upstream 39bp
chr17 62523291 62523291 1 + T C BLCA 62523290 + 62523270 62523310 41 TGACCATAAAGAAGAAAATACTGGAAATGAGGAGGTAGAGG TGACCATAAAGAAGAAAATACCGGAAATGAGGAGGTAGAGG < 41bp 0.779741909830371 0.558298895399719 0.3555346 0.3069641 prediction 0.442886028861303 Functional Loss - CEP95 ENSG00000258890 CDS Human protein_coding chr17:62523290 chr17:62523291 synonymous SNV . 0 22 hm5C_associated_SNPs_80892 0 0 1 0 2 CEP95 chr17:62523229 3'AG 62523229 Downstream 63bp
chr17 62523291 62523291 1 + T C BLCA 62523290 + 62523270 62523310 41 TGACCATAAAGAAGAAAATACTGGAAATGAGGAGGTAGAGG TGACCATAAAGAAGAAAATACCGGAAATGAGGAGGTAGAGG < 41bp 0.779741909830371 0.558298895399719 0.3555346 0.3069641 prediction 0.442886028861303 Functional Loss - CEP95 ENSG00000258890 CDS Human protein_coding chr17:62523290 chr17:62523291 synonymous SNV . 0 22 hm5C_associated_SNPs_80892 0 0 1 0 2 CEP95 chr17:62523382 5'GT 62523382 Upstream 92bp
chr1 160394937 160394937 1 + A C rs17380127 160394933 + 160394913 160394953 41 CTTGGAGCGATACTTGGCGGCTGGACCTACCATCCAGTACC CTTGGAGCGATACTTGGCGGCTGGCCCTACCATCCAGTACC < 41bp 0.721438704534485 0.318188092581388 0.3415162 0.26716778 prediction 0.44287740906897 Functional Loss - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160394933 chr1:160394937 synonymous SNV . 0 25 hm5C_associated_SNPs_80893 0 0 1 0 1 VANGL2 chr1:160394908 3'AG 160394908 Downstream 30bp
chr8 99019808 99019808 1 + A C HNSC 99019807 + 99019787 99019827 41 CCTGAGGGACACGTGCTCCGCAGCGATGGGAAGACGTGTGC CCTGAGGGACACGTGCTCCGCCGCGATGGGAAGACGTGTGC < 41bp 0.822049757859898 0.600614925100889 0.26063147 0.09758976 prediction 0.442869665518016 Functional Loss - MATN2 ENSG00000132561 CDS Human protein_coding chr8:99019807 chr8:99019808 nonsynonymous SNV 0.805 1 22 hm5C_associated_SNPs_80895 0 0 0 0 1 MATN2 chr8:99019829 5'GT 99019829 Upstream 22bp
chr6 133789852 133789852 1 + G A SKCM 133789849 + 133789829 133789869 41 TCAGTTGCAGGAATCTCTCCCAGGACTGACTAACCAACCAG TCAGTTGCAGGAATCTCTCCCAGAACTGACTAACCAACCAG < 41bp 0.745224851199302 0.523791844325756 0.9198433 0.4824304 prediction 0.442866013747092 Functional Loss - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133789849 chr6:133789852 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_80899 0 0 1 0 2 EYA4 chr6:133789869 5'GT 133789869 Upstream 18bp
chr6 133789852 133789852 1 + G A SKCM 133789849 + 133789829 133789869 41 TCAGTTGCAGGAATCTCTCCCAGGACTGACTAACCAACCAG TCAGTTGCAGGAATCTCTCCCAGAACTGACTAACCAACCAG < 41bp 0.745224851199302 0.523791844325756 0.9198433 0.4824304 prediction 0.442866013747092 Functional Loss - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133789849 chr6:133789852 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_80899 0 0 1 0 2 EYA4 chr6:133789887 5'GT 133789887 Upstream 36bp
chr22 50319193 50319193 1 + C T rs191387531 50319191 + 50319171 50319211 41 AACGGAAGATGCCTGTGTGCCGCCGGCAGAGGCTGGTGAGT AACGGAAGATGCCTGTGTGCCGTCGGCAGAGGCTGGTGAGT < 41bp 0.808295988123688 0.586867761537854 0.23162046 0.21847308 prediction 0.442856453171668 Functional Loss - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50319191 chr22:50319193 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_80901 0 0 1 0 1 CRELD2 chr22:50319205 5'GT 50319205 Upstream 13bp
chr12 66639014 66639014 1 + G A HNSC 66639011 + 66638991 66639031 41 GGCAGGCCGGTGTGCTGCAACGCGGGCAAAGTTAAGACCAT GGCAGGCCGGTGTGCTGCAACGCAGGCAAAGTTAAGACCAT < 41bp 0.778937577627726 0.557512264640286 0.4011349 0.2614108 prediction 0.442850625974879 Functional Loss - IRAK3 ENSG00000090376 CDS Human protein_coding chr12:66639011 chr12:66639014 nonsynonymous SNV 0.020 1 24 hm5C_associated_SNPs_80903 0 0 0 0 1 IRAK3 chr12:66639042 5'GT 66639042 Upstream 29bp
chr9 27169569 27169569 1 + G A COAD 27169566 + 27169546 27169586 41 CCCCAGGATGCTGGAGTGTACTCGGCCAGGTATATAGGAGG CCCCAGGATGCTGGAGTGTACTCAGCCAGGTATATAGGAGG < 41bp 0.721424386811021 0.482230596720682 0.46633357 0.19607297 prediction 0.442848773622043 Functional Loss - TEK ENSG00000120156 CDS Human protein_coding chr9:27169566 chr9:27169569 synonymous SNV . 0 24 hm5C_associated_SNPs_80904 0 0 0 0 3 TEK chr9:27169475 3'AG 27169475 Downstream 95bp
chr9 27169569 27169569 1 + G A COAD 27169566 + 27169546 27169586 41 CCCCAGGATGCTGGAGTGTACTCGGCCAGGTATATAGGAGG CCCCAGGATGCTGGAGTGTACTCAGCCAGGTATATAGGAGG < 41bp 0.721424386811021 0.482230596720682 0.46633357 0.19607297 prediction 0.442848773622043 Functional Loss - TEK ENSG00000120156 CDS Human protein_coding chr9:27169566 chr9:27169569 synonymous SNV . 0 24 hm5C_associated_SNPs_80904 0 0 0 0 3 TEK chr9:27169493 3'AG 27169493 Downstream 77bp
chr9 27169569 27169569 1 + G A COAD 27169566 + 27169546 27169586 41 CCCCAGGATGCTGGAGTGTACTCGGCCAGGTATATAGGAGG CCCCAGGATGCTGGAGTGTACTCAGCCAGGTATATAGGAGG < 41bp 0.721424386811021 0.482230596720682 0.46633357 0.19607297 prediction 0.442848773622043 Functional Loss - TEK ENSG00000120156 CDS Human protein_coding chr9:27169566 chr9:27169569 synonymous SNV . 0 24 hm5C_associated_SNPs_80904 0 0 0 0 3 TEK chr9:27169627 5'GT 27169627 Upstream 59bp
chr1 8395560 8395560 1 + G A rs7535752 8395557 + 8395537 8395577 41 AGCTGACGGGCTCCAGCGAGCGCGCGGAGCAGCCTCTGTCC AGCTGACGGGCTCCAGCGAGCGCACGGAGCAGCCTCTGTCC < 41bp 0.817319114714224 0.595899444852118 0.7880053 0.565156 prediction 0.442839339724212 Functional Loss - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8395557 chr1:8395560 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_80907 0 0 0 0 2 SLC45A1 chr1:8395497 3'AG 8395497 Downstream 64bp
chr1 8395560 8395560 1 + G A rs7535752 8395557 + 8395537 8395577 41 AGCTGACGGGCTCCAGCGAGCGCGCGGAGCAGCCTCTGTCC AGCTGACGGGCTCCAGCGAGCGCACGGAGCAGCCTCTGTCC < 41bp 0.817319114714224 0.595899444852118 0.7880053 0.565156 prediction 0.442839339724212 Functional Loss - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8395557 chr1:8395560 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_80907 0 0 0 0 2 SLC45A1 chr1:8395650 5'GT 8395650 Upstream 91bp
chr20 49197873 49197873 1 + C T rs16995309 49197870 + 49197850 49197890 41 TCGAGGTGCCCAGGCTGCCTCCCCAGCCAAAGGGGAGCCGT TCGAGGTGCCCAGGCTGCCTCCCTAGCCAAAGGGGAGCCGT < 41bp 0.721418823841223 0.494018139813038 0.11122823 0.062026113 prediction 0.442837647682446 Functional Loss - PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49197870 chr20:49197873 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_80909 0 0 1 0 1 PTPN1 chr20:49197802 3'AG 49197802 Downstream 72bp
chr15 77320930 77320930 1 + G A UCEC 77320927 + 77320907 77320947 41 TACGAGCAGAAGTGCCGGGACGCGGACGACGCGGAGCAGGC TACGAGCAGAAGTGCCGGGACGCAGACGACGCGGAGCAGGC < 41bp 0.721417666162838 0.471305128792572 0.47901738 0.3429364 prediction 0.442835332325676 Functional Loss - PSTPIP1 ENSG00000140368 CDS Human protein_coding chr15:77320927 chr15:77320930 synonymous SNV . 0 24 hm5C_associated_SNPs_80910 0 0 0 0 2 PSTPIP1 chr15:77320895 3'AG 77320895 Downstream 36bp
chr15 77320930 77320930 1 + G A UCEC 77320927 + 77320907 77320947 41 TACGAGCAGAAGTGCCGGGACGCGGACGACGCGGAGCAGGC TACGAGCAGAAGTGCCGGGACGCAGACGACGCGGAGCAGGC < 41bp 0.721417666162838 0.471305128792572 0.47901738 0.3429364 prediction 0.442835332325676 Functional Loss - PSTPIP1 ENSG00000140368 CDS Human protein_coding chr15:77320927 chr15:77320930 synonymous SNV . 0 24 hm5C_associated_SNPs_80910 0 0 0 0 2 PSTPIP1 chr15:77320993 5'GT 77320993 Upstream 64bp
chr2 1204889 1204889 1 + G A LUAD 1204886 + 1204866 1204906 41 TCTGTCCATGGCTCGCATCTCAAGGTACAAAGCCGGAACGG TCTGTCCATGGCTCGCATCTCAAAGTACAAAGCCGGAACGG < 41bp 0.774551536670903 0.553139796471213 0.8249589 0.39940962 prediction 0.442823480399379 Functional Loss - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1204886 chr2:1204889 nonsynonymous SNV 0.969 3 24 hm5C_associated_SNPs_80913 0 0 0 0 1 SNTG2 chr2:1204916 5'GT 1204916 Upstream 28bp
chr15 41865596 41865596 1 + C T SKCM 41865593 + 41865573 41865613 41 TACTATCGTCAAGGCTGTGCCTCCAAACTGCCTGTCAAGTG TACTATCGTCAAGGCTGTGCCTCTAAACTGCCTGTCAAGTG < 41bp 0.721411281776433 0.48181811466199 0.97112584 0.9427211 prediction 0.442822563552866 Functional Loss - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41865593 chr15:41865596 synonymous SNV . 0 24 hm5C_associated_SNPs_80914 0 0 0 0 2 TYRO3 chr15:41865506 3'AG 41865506 Downstream 91bp
chr15 41865596 41865596 1 + C T SKCM 41865593 + 41865573 41865613 41 TACTATCGTCAAGGCTGTGCCTCCAAACTGCCTGTCAAGTG TACTATCGTCAAGGCTGTGCCTCTAAACTGCCTGTCAAGTG < 41bp 0.721411281776433 0.48181811466199 0.97112584 0.9427211 prediction 0.442822563552866 Functional Loss - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41865593 chr15:41865596 synonymous SNV . 0 24 hm5C_associated_SNPs_80914 0 0 0 0 2 TYRO3 chr15:41865665 5'GT 41865665 Upstream 70bp
chr19 11015663 11015663 1 + G A GBM 11015660 + 11015640 11015680 41 TGTCTTTAAGTGCTCAGTGTCCCGAGAGACAGAGTGCAGCC TGTCTTTAAGTGCTCAGTGTCCCAAGAGACAGAGTGCAGCC < 41bp 0.721409833238555 0.481138167257558 0.11093074 0.02122292 prediction 0.442819666477111 Functional Loss - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11015660 chr19:11015663 nonsynonymous SNV 0.158 1 24 hm5C_associated_SNPs_80916 0 0 1 0 2 CARM1 chr19:11015627 3'AG 11015627 Downstream 37bp
chr19 11015663 11015663 1 + G A GBM 11015660 + 11015640 11015680 41 TGTCTTTAAGTGCTCAGTGTCCCGAGAGACAGAGTGCAGCC TGTCTTTAAGTGCTCAGTGTCCCAAGAGACAGAGTGCAGCC < 41bp 0.721409833238555 0.481138167257558 0.11093074 0.02122292 prediction 0.442819666477111 Functional Loss - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11015660 chr19:11015663 nonsynonymous SNV 0.158 1 24 hm5C_associated_SNPs_80916 0 0 1 0 2 CARM1 chr19:11015752 5'GT 11015752 Upstream 90bp
chr7 102553545 102553545 1 + A C rs114626804 102553544 + 102553524 102553564 41 AAGACAAACCTGGGTGCAGCCAGAGAGGTCCAGATAGATGA AAGACAAACCTGGGTGCAGCCCGAGAGGTCCAGATAGATGA < 41bp 0.768275442468875 0.54686798978172 0.6811532 0.057341665 prediction 0.44281490537431 Functional Loss - FBXL13 ENSG00000161040 CDS Human protein_coding chr7:102553544 chr7:102553545 synonymous SNV . 0 22 hm5C_associated_SNPs_80918 0 0 0 0 1 FBXL13 chr7:102553592 5'GT 102553592 Upstream 48bp
chr17 16335315 16335315 1 + G A PAAD 16335312 + 16335292 16335332 41 TGAGCCAGGAGGCTTGGCGCCCCGAAGCTCCTACAGGCCCC TGAGCCAGGAGGCTTGGCGCCCCAAAGCTCCTACAGGCCCC < 41bp 0.797791040964118 0.576386658049395 0.31116134 0.48953152 prediction 0.442808765829446 Functional Loss - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16335312 chr17:16335315 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_80919 0 0 1 0 1 TRPV2 chr17:16335280 3'AG 16335280 Downstream 36bp
chr7 101183320 101183320 1 + G A SKCM 101183317 + 101183297 101183337 41 GTGCCACGACAGAGAAGGCCCACGGGCCCAGCCGGTGAGTG GTGCCACGACAGAGAAGGCCCACAGGCCCAGCCGGTGAGTG < 41bp 0.781180365350508 0.559777006193859 0.08848584 0.04993725 prediction 0.442806718313297 Functional Loss - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101183317 chr7:101183320 synonymous SNV . 0 24 hm5C_associated_SNPs_80921 0 0 1 0 1 COL26A1 chr7:101183330 5'GT 101183330 Upstream 11bp
chr19 14580607 14580607 1 + G A UCEC 14580604 + 14580584 14580624 41 TGCTGGGCCTACAGTTTCTTCACGAACACAAGATCGTCTAC TGCTGGGCCTACAGTTTCTTCACAAACACAAGATCGTCTAC < 41bp 0.792751802199271 0.571352469194881 0.07614043 0.041421354 prediction 0.442798666008779 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580604 chr19:14580607 nonsynonymous SNV 0.993 0 24 hm5C_associated_SNPs_80923 0 0 1 0 2 PKN1 chr19:14580564 3'AG 14580564 Downstream 44bp
chr19 14580607 14580607 1 + G A UCEC 14580604 + 14580584 14580624 41 TGCTGGGCCTACAGTTTCTTCACGAACACAAGATCGTCTAC TGCTGGGCCTACAGTTTCTTCACAAACACAAGATCGTCTAC < 41bp 0.792751802199271 0.571352469194881 0.07614043 0.041421354 prediction 0.442798666008779 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580604 chr19:14580607 nonsynonymous SNV 0.993 0 24 hm5C_associated_SNPs_80923 0 0 1 0 2 PKN1 chr19:14580626 5'GT 14580626 Upstream 20bp
chr1 47611556 47611556 1 + C T rs112631646 47611554 + 47611534 47611574 41 ACAGGTATCATGGTCCTCCTCTCCATTTATGGCCTTCACCA ACAGGTATCATGGTCCTCCTCTTCATTTATGGCCTTCACCA < 41bp 0.851997293531831 0.630602027617033 0.9626507 0.057973564 prediction 0.442790531829596 Functional Loss - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47611554 chr1:47611556 nonsynonymous SNV 0.419 1 23 hm5C_associated_SNPs_80924 0 0 0 0 2 CYP4A22 chr1:47611538 3'AG 47611538 Downstream 19bp
chr1 47611556 47611556 1 + C T rs112631646 47611554 + 47611534 47611574 41 ACAGGTATCATGGTCCTCCTCTCCATTTATGGCCTTCACCA ACAGGTATCATGGTCCTCCTCTTCATTTATGGCCTTCACCA < 41bp 0.851997293531831 0.630602027617033 0.9626507 0.057973564 prediction 0.442790531829596 Functional Loss - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47611554 chr1:47611556 nonsynonymous SNV 0.419 1 23 hm5C_associated_SNPs_80924 0 0 0 0 2 CYP4A22 chr1:47611602 5'GT 47611602 Upstream 47bp
chr5 1221326 1221326 1 + G A COAD 1221323 + 1221303 1221343 41 CCCAACATCTTCTGGCAAGTCACGTGGCGCGTGGTCAGCCC CCCAACATCTTCTGGCAAGTCACATGGCGCGTGGTCAGCCC < 41bp 0.785069008277574 0.563674932685547 0.111842155 0.10535559 prediction 0.442788151184053 Functional Loss - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1221323 chr5:1221326 synonymous SNV . 0 24 hm5C_associated_SNPs_80926 0 0 1 0 1 SLC6A19 chr5:1221266 3'AG 1221266 Downstream 61bp
chr14 90730122 90730122 1 + C T rs145373245 90730119 + 90730099 90730139 41 ACATCTGTGGGCTCAGAACACTACGTCAGCATTCTTTCATT ACATCTGTGGGCTCAGAACACTATGTCAGCATTCTTTCATT < 41bp 0.721392422011476 0.497595394840854 0.24145925 0.1164459 prediction 0.442784844022953 Functional Loss - PSMC1 ENSG00000100764 CDS Human protein_coding chr14:90730119 chr14:90730122 synonymous SNV . 0 24 hm5C_associated_SNPs_80927 0 0 0 0 1 PSMC1 chr14:90730191 5'GT 90730191 Upstream 70bp
chr1 16069670 16069670 1 + C T STAD 16069668 + 16069648 16069688 41 TTCTCCCTCCGGGCCGTGTCCACGCTGCTGTCCCTGGGCAA TTCTCCCTCCGGGCCGTGTCCATGCTGCTGTCCCTGGGCAA < 41bp 0.790286081224339 0.568899168729313 0.5687022 0.54471034 prediction 0.442773824990051 Functional Loss - TMEM82 ENSG00000162460 CDS Human protein_coding chr1:16069668 chr1:16069670 nonsynonymous SNV 0.900 0 23 hm5C_associated_SNPs_80930 0 0 0 0 1 TMEM82 chr1:16069689 5'GT 16069689 Upstream 20bp
chr1 246829080 246829080 1 + C T COAD 246829077 + 246829057 246829097 41 TTTCCTCAGTGTTGGAGGAACTGCATTATACTGCACTTTCG TTTCCTCAGTGTTGGAGGAACTGTATTATACTGCACTTTCG < 41bp 0.72709316359506 0.50571008614063 0.8557093 0.4829602 prediction 0.44276615490886 Functional Loss - CNST ENSG00000162852 CDS Human protein_coding chr1:246829077 chr1:246829080 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_80934 0 0 1 0 1 CNST chr1:246829002 3'AG 246829002 Downstream 79bp
chr20 2985712 2985712 1 + C T UCS 2985709 + 2985689 2985729 41 CTTAACCTTTCAGGCTCTCCCTGCATGTCCTATCCAGGCCA CTTAACCTTTCAGGCTCTCCCTGTATGTCCTATCCAGGCCA < 41bp 0.738793690062729 0.517411162162111 0.42720574 0.25209737 prediction 0.442765055801235 Functional Loss - PTPRA ENSG00000132670 CDS Human protein_coding chr20:2985709 chr20:2985712 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_80936 0 0 1 0 1 PTPRA chr20:2985702 3'AG 2985702 Downstream 11bp
chr22 18021881 18021881 1 + G T rs80293963 18021878 + 18021858 18021898 41 ATTAACAGCCTCCGAGGACCCAGGCTAGGCACACCAGAGGA ATTAACAGCCTCCGAGGACCCAGTCTAGGCACACCAGAGGA < 41bp 0.721382219169154 0.310526261470949 0.35512185 0.07962942 prediction 0.442764438338307 Functional Loss - CECR2 ENSG00000099954 CDS Human protein_coding chr22:18021878 chr22:18021881 nonsynonymous SNV 0.104 1 24 hm5C_associated_SNPs_80939 0 0 0 0 1 CECR2 chr22:18021846 3'AG 18021846 Downstream 36bp
chr18 43249308 43249308 1 + A C HNSC 43249304 + 43249284 43249324 41 AGTGCCCTGGGTACCATCTTCAGCAAGTGGGACCTCCCAGT AGTGCCCTGGGTACCATCTTCAGCCAGTGGGACCTCCCAGT < 41bp 0.721381699416646 0.306405662522233 0.51982546 0.4090538 prediction 0.442763398833292 Functional Loss - SLC14A2 ENSG00000132874 CDS Human protein_coding chr18:43249304 chr18:43249308 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_80940 0 0 0 0 1 SLC14A2 chr18:43249271 3'AG 43249271 Downstream 38bp
chr1 205036317 205036317 1 + C T UCEC 205036314 + 205036294 205036334 41 TATGAGTTCCGGGTCATAGCCAGCAACATTCTGGGCACTGG TATGAGTTCCGGGTCATAGCCAGTAACATTCTGGGCACTGG < 41bp 0.743378843222584 0.522001775366491 0.50991344 0.2581827 prediction 0.442754135712187 Functional Loss - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205036314 chr1:205036317 synonymous SNV . 0 24 hm5C_associated_SNPs_80941 0 0 0 0 2 CNTN2 chr1:205036229 3'AG 205036229 Downstream 89bp
chr1 205036317 205036317 1 + C T UCEC 205036314 + 205036294 205036334 41 TATGAGTTCCGGGTCATAGCCAGCAACATTCTGGGCACTGG TATGAGTTCCGGGTCATAGCCAGTAACATTCTGGGCACTGG < 41bp 0.743378843222584 0.522001775366491 0.50991344 0.2581827 prediction 0.442754135712187 Functional Loss - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205036314 chr1:205036317 synonymous SNV . 0 24 hm5C_associated_SNPs_80941 0 0 0 0 2 CNTN2 chr1:205036378 5'GT 205036378 Upstream 62bp
chr19 49675017 49675017 1 + G T rs61732831 49675015 + 49674995 49675035 41 CCAAAGGGGACCTTGAGGTCCTGCAGGCCCAGGTATGACAC CCAAAGGGGACCTTGAGGTCCTTCAGGCCCAGGTATGACAC < 41bp 0.721376829540535 0.384015855585805 0.28096867 0.1835339 prediction 0.442753659081069 Functional Loss - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49675015 chr19:49675017 synonymous SNV . 0 23 hm5C_associated_SNPs_80942 2 0 1 0 1 TRPM4 chr19:49675026 5'GT 49675026 Upstream 10bp
chr19 35832319 35832319 1 + C T LUAD 35832317 + 35832297 35832337 41 ACTCTGGAAACTCGGTCAGCCTCCAATGTGACTTCTCAAGC ACTCTGGAAACTCGGTCAGCCTTCAATGTGACTTCTCAAGC < 41bp 0.721374900076344 0.412769034164504 0.962402 0.4149739 prediction 0.442749800152687 Functional Loss - CD22 ENSG00000012124 CDS Human protein_coding chr19:35832317 chr19:35832319 synonymous SNV . 0 23 hm5C_associated_SNPs_80943 0 0 0 0 1 CD22 chr19:35832246 3'AG 35832246 Downstream 74bp
chr2 113832386 113832386 1 + G A SKCM 113832383 + 113832363 113832403 41 TCCAGGGAGGGAGCCGCTGCCTGGCATGTGTGGAGACAGAA TCCAGGGAGGGAGCCGCTGCCTGACATGTGTGGAGACAGAA < 41bp 0.773847842682569 0.552472984467617 0.22555783 0.18591228 prediction 0.442749716429903 Functional Loss - IL1F10 ENSG00000136697 CDS Human protein_coding chr2:113832383 chr2:113832386 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_80944 0 0 0 0 2 IL1F10 chr2:113832300 3'AG 113832300 Downstream 87bp
chr2 113832386 113832386 1 + G A SKCM 113832383 + 113832363 113832403 41 TCCAGGGAGGGAGCCGCTGCCTGGCATGTGTGGAGACAGAA TCCAGGGAGGGAGCCGCTGCCTGACATGTGTGGAGACAGAA < 41bp 0.773847842682569 0.552472984467617 0.22555783 0.18591228 prediction 0.442749716429903 Functional Loss - IL1F10 ENSG00000136697 CDS Human protein_coding chr2:113832383 chr2:113832386 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_80944 0 0 0 0 2 IL1F10 chr2:113832427 5'GT 113832427 Upstream 42bp
chr2 103039729 103039729 1 + G T THCA 103039726 + 103039706 103039746 41 TATTGGAGTGATGACAGGAACACGGGAGAACAATGCTCTGT TATTGGAGTGATGACAGGAACACTGGAGAACAATGCTCTGT < 41bp 0.72136999497021 0.478201366164685 0.51760584 0.2473613 prediction 0.442739989940419 Functional Loss - IL18RAP ENSG00000115607 UTR5 Human protein_coding chr2:103039726 chr2:103039729 . . 0 24 hm5C_associated_SNPs_80947 0 0 0 0 2 IL18RAP chr2:103039638 3'AG 103039638 Downstream 92bp
chr2 103039729 103039729 1 + G T THCA 103039726 + 103039706 103039746 41 TATTGGAGTGATGACAGGAACACGGGAGAACAATGCTCTGT TATTGGAGTGATGACAGGAACACTGGAGAACAATGCTCTGT < 41bp 0.72136999497021 0.478201366164685 0.51760584 0.2473613 prediction 0.442739989940419 Functional Loss - IL18RAP ENSG00000115607 UTR5 Human protein_coding chr2:103039726 chr2:103039729 . . 0 24 hm5C_associated_SNPs_80947 0 0 0 0 2 IL18RAP chr2:103039807 5'GT 103039807 Upstream 79bp
chr6 43402429 43402429 1 + G T LIHC 43402426 + 43402406 43402446 41 GTGGGAGCAGGCACTGGGAGCCCGAGTAGAGGCCTGCCGGG GTGGGAGCAGGCACTGGGAGCCCTAGTAGAGGCCTGCCGGG < 41bp 0.721369787737696 0.316473596964156 0.3988815 0.105558366 prediction 0.442739575475392 Functional Loss - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43402426 chr6:43402429 nonsynonymous SNV 0.929 3 24 hm5C_associated_SNPs_80948 0 0 1 0 1 ABCC10 chr6:43402359 3'AG 43402359 Downstream 71bp
chr4 103528835 103528835 1 + C T LGG 103528832 + 103528812 103528852 41 GCCCATGTGGACAGTACTACCTACGATGGAACCACACCCCT GCCCATGTGGACAGTACTACCTATGATGGAACCACACCCCT < 41bp 0.721364554512557 0.49801057761064 0.28296787 0.34328762 prediction 0.442729109025115 Functional Loss - NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103528832 chr4:103528835 synonymous SNV . 0 24 hm5C_associated_SNPs_80949 0 0 0 0 1 NFKB1 chr4:103528908 5'GT 103528908 Upstream 74bp
chr10 81371341 81371341 1 + G T rs3997772 81371339 + 81371319 81371359 41 TCTTCCTCCTCCTCAGCAGCCTGGAGACCCCACAACCTCCA TCTTCCTCCTCCTCAGCAGCCTTGAGACCCCACAACCTCCA < 41bp 0.826356859371247 0.604993869636903 0.850365 0.47896692 prediction 0.442725979468689 Functional Loss - SFTPA1 ENSG00000122852 UTR5 Human protein_coding chr10:81371339 chr10:81371341 . . 0 23 hm5C_associated_SNPs_80952 0 0 0 0 4 SFTPA1 chr10:81371335 3'AG 81371335 Downstream 7bp
chr10 81371341 81371341 1 + G T rs3997772 81371339 + 81371319 81371359 41 TCTTCCTCCTCCTCAGCAGCCTGGAGACCCCACAACCTCCA TCTTCCTCCTCCTCAGCAGCCTTGAGACCCCACAACCTCCA < 41bp 0.826356859371247 0.604993869636903 0.850365 0.47896692 prediction 0.442725979468689 Functional Loss - SFTPA1 ENSG00000122852 UTR5 Human protein_coding chr10:81371339 chr10:81371341 . . 0 23 hm5C_associated_SNPs_80952 0 0 0 0 4 SFTPA1 chr10:81371338 3'AG 81371338 Downstream 4bp
chr10 81371341 81371341 1 + G T rs3997772 81371339 + 81371319 81371359 41 TCTTCCTCCTCCTCAGCAGCCTGGAGACCCCACAACCTCCA TCTTCCTCCTCCTCAGCAGCCTTGAGACCCCACAACCTCCA < 41bp 0.826356859371247 0.604993869636903 0.850365 0.47896692 prediction 0.442725979468689 Functional Loss - SFTPA1 ENSG00000122852 UTR5 Human protein_coding chr10:81371339 chr10:81371341 . . 0 23 hm5C_associated_SNPs_80952 0 0 0 0 4 SFTPA1 chr10:81371390 5'GT 81371390 Upstream 50bp
chr10 81371341 81371341 1 + G T rs3997772 81371339 + 81371319 81371359 41 TCTTCCTCCTCCTCAGCAGCCTGGAGACCCCACAACCTCCA TCTTCCTCCTCCTCAGCAGCCTTGAGACCCCACAACCTCCA < 41bp 0.826356859371247 0.604993869636903 0.850365 0.47896692 prediction 0.442725979468689 Functional Loss - SFTPA1 ENSG00000122852 UTR5 Human protein_coding chr10:81371339 chr10:81371341 . . 0 23 hm5C_associated_SNPs_80952 0 0 0 0 4 SFTPA1 chr10:81371397 5'GT 81371397 Upstream 57bp
chr19 50964939 50964939 1 + G A UCEC 50964936 + 50964916 50964956 41 TCACCTGGTGTCTCCAAGAACACGGCCCGCATCCTCAAGAC TCACCTGGTGTCTCCAAGAACACAGCCCGCATCCTCAAGAC < 41bp 0.803126143625174 0.581764011941618 0.30529052 0.10879251 prediction 0.442724263367112 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50964936 chr19:50964939 synonymous SNV . 0 24 hm5C_associated_SNPs_80953 0 0 0 0 1 MYBPC2 chr19:50964958 5'GT 50964958 Upstream 20bp
chr16 56921848 56921848 1 + C T rs150692587 56921846 + 56921826 56921866 41 TCCCCTGGCAGGCCGCAGGTCTCGGGAGAATGAAGCCCAAC TCCCCTGGCAGGCCGCAGGTCTTGGGAGAATGAAGCCCAAC < 41bp 0.721358606212459 0.440612662814119 0.1179755 0.14410421 prediction 0.442717212424919 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56921846 chr16:56921848 synonymous SNV . 0 23 hm5C_associated_SNPs_80955 0 0 0 0 2 SLC12A3 chr16:56921837 3'AG 56921837 Downstream 12bp
chr16 56921848 56921848 1 + C T rs150692587 56921846 + 56921826 56921866 41 TCCCCTGGCAGGCCGCAGGTCTCGGGAGAATGAAGCCCAAC TCCCCTGGCAGGCCGCAGGTCTTGGGAGAATGAAGCCCAAC < 41bp 0.721358606212459 0.440612662814119 0.1179755 0.14410421 prediction 0.442717212424919 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56921846 chr16:56921848 synonymous SNV . 0 23 hm5C_associated_SNPs_80955 0 0 0 0 2 SLC12A3 chr16:56921943 5'GT 56921943 Upstream 96bp
chrX 14915345 14915345 1 + T C rs147869193 14915344 + 14915324 14915364 41 GATGTTTGACCTGTCAGAAACTGGAATAAATAGCATTGTAA GATGTTTGACCTGTCAGAAACCGGAATAAATAGCATTGTAA < 41bp 0.779009221481058 0.557651243023258 0.3010007 0.33483756 prediction 0.442715956915599 Functional Loss - MOSPD2 ENSG00000130150 CDS Human protein_coding chrX:14915344 chrX:14915345 synonymous SNV . 0 22 hm5C_associated_SNPs_80956 0 0 1 0 1 MOSPD2 chrX:14915360 5'GT 14915360 Upstream 16bp
chr16 46962905 46962905 1 + C T rs115493492 46962903 + 46962883 46962923 41 ATCAACTTCCTGGAGAAGTACGCGTGAGGACGCCTGAGCCC ATCAACTTCCTGGAGAAGTACGTGTGAGGACGCCTGAGCCC < 41bp 0.721354311705286 0.457988138482125 0.15431911 0.14106604 prediction 0.442708623410572 Functional Loss - GPT2 ENSG00000166123 CDS Human protein_coding chr16:46962903 chr16:46962905 nonsynonymous SNV 0.038 3 23 hm5C_associated_SNPs_80958 0 0 1 0 1 GPT2 chr16:46962819 3'AG 46962819 Downstream 87bp
chr1 2323302 2323302 1 + G T rs565130284 2323300 + 2323280 2323320 41 AAGTGCTCGCTGCAGCTTCCCGGAGCCGGAGCGCAGCGCCT AAGTGCTCGCTGCAGCTTCCCGTAGCCGGAGCGCAGCGCCT < 41bp 0.89602579325063 0.674671580393474 0.9016229 0.7111804 prediction 0.442708425714312 Functional Loss - RER1 ENSG00000157916 UTR5 Human protein_coding chr1:2323300 chr1:2323302 . . 0 23 hm5C_associated_SNPs_80959 0 0 1 0 1 RER1 chr1:2323397 5'GT 2323397 Upstream 96bp
chr14 76948420 76948420 1 + G C SKCM 76948416 + 76948396 76948436 41 ATACAAGCGACGGCTGGACTCAGAGAGCAGCCCATACCTGA ATACAAGCGACGGCTGGACTCAGACAGCAGCCCATACCTGA < 41bp 0.721348353927148 0.415287468403381 0.9189963 0.23988461 prediction 0.442696707854296 Functional Loss - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76948416 chr14:76948420 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_80961 0 0 1 0 2 ESRRB chr14:76948359 3'AG 76948359 Downstream 62bp
chr14 76948420 76948420 1 + G C SKCM 76948416 + 76948396 76948436 41 ATACAAGCGACGGCTGGACTCAGAGAGCAGCCCATACCTGA ATACAAGCGACGGCTGGACTCAGACAGCAGCCCATACCTGA < 41bp 0.721348353927148 0.415287468403381 0.9189963 0.23988461 prediction 0.442696707854296 Functional Loss - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76948416 chr14:76948420 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_80961 0 0 1 0 2 ESRRB chr14:76948469 5'GT 76948469 Upstream 50bp
chr16 30938951 30938951 1 + C T UCEC 30938949 + 30938929 30938969 41 CCCCAACTGCTGGGAGTGCCCTCGCTGCACCCAGGAAGGCC CCCCAACTGCTGGGAGTGCCCTTGCTGCACCCAGGAAGGCC < 41bp 0.721340979752874 0.458428207311436 0.23939985 0.16909072 prediction 0.442681959505747 Functional Loss - FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30938949 chr16:30938951 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_80963 0 0 1 0 2 FBXL19 chr16:30938894 3'AG 30938894 Downstream 58bp
chr16 30938951 30938951 1 + C T UCEC 30938949 + 30938929 30938969 41 CCCCAACTGCTGGGAGTGCCCTCGCTGCACCCAGGAAGGCC CCCCAACTGCTGGGAGTGCCCTTGCTGCACCCAGGAAGGCC < 41bp 0.721340979752874 0.458428207311436 0.23939985 0.16909072 prediction 0.442681959505747 Functional Loss - FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30938949 chr16:30938951 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_80963 0 0 1 0 2 FBXL19 chr16:30938980 5'GT 30938980 Upstream 30bp
chr2 170606000 170606000 1 + G T COAD 170605998 + 170605978 170606018 41 CGGCGGACAAACTACAATCACAGAATGCTATGACCCTGAAC CGGCGGACAAACTACAATCACATAATGCTATGACCCTGAAC < 41bp 0.721335359957538 0.400461603044653 0.2802344 0.17904496 prediction 0.442670719915075 Functional Loss - KLHL23;PHOSPHO2-KLHL23 ENSG00000213160 CDS Human protein_coding chr2:170605998 chr2:170606000 stopgain 0.994 1 23 hm5C_associated_SNPs_80968 0 0 1 0 1 KLHL23;PHOSPHO2-KLHL23 chr2:170605932 3'AG 170605932 Downstream 69bp
chr16 20494495 20494495 1 + G A SKCM 20494492 + 20494472 20494512 41 GACAGCCCCATACAAGTACCCAAGAAAGGTAAGGCCTTTGA GACAGCCCCATACAAGTACCCAAAAAAGGTAAGGCCTTTGA < 41bp 0.72190201449534 0.500568629584705 0.23085758 0.21270701 prediction 0.442666769821269 Functional Loss - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20494492 chr16:20494495 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_80971 0 0 0 0 1 ACSM2A chr16:20494499 5'GT 20494499 Upstream 5bp
chr13 24234628 24234628 1 + C T LGG 24234625 + 24234605 24234645 41 CGCCGTGACTCAGTGCAGACCTGCGGTAAGTTCAGCAGGGA CGCCGTGACTCAGTGCAGACCTGTGGTAAGTTCAGCAGGGA < 41bp 0.725833670859088 0.504505798593328 0.41858047 0.39971828 prediction 0.44265574453152 Functional Loss - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24234625 chr13:24234628 synonymous SNV . 0 24 hm5C_associated_SNPs_80975 0 0 1 0 1 TNFRSF19 chr13:24234629 5'GT 24234629 Upstream 2bp
chr6 127476481 127476481 1 + G A CESC 127476478 + 127476458 127476498 41 GAGGGACTGAAACACGGGTCCGAGAAATAATACAGCATCCT GAGGGACTGAAACACGGGTCCGAAAAATAATACAGCATCCT < 41bp 0.751165053659681 0.529847461981749 0.45171314 0.21407247 prediction 0.442635183355862 Functional Loss - RSPO3 ENSG00000146374 CDS Human protein_coding chr6:127476478 chr6:127476481 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_80979 0 0 0 0 1 RSPO3 chr6:127476386 3'AG 127476386 Downstream 96bp
chr12 30954660 30954660 1 + G A rs11051091 30954657 + 30954637 30954677 41 TTTTGGAATCCTTAGGCTTCCACGTGTGGAAAGCCTGAGCT TTTTGGAATCCTTAGGCTTCCACATGTGGAAAGCCTGAGCT < 41bp 0.733540189663564 0.512229375094068 0.49209327 0.7819966 prediction 0.442621629138992 Functional Loss - LINC00941 ENSG00000235884 ncRNA_exonic Human lincRNA chr12:30954657 chr12:30954660 . . 0 24 hm5C_associated_SNPs_80983 0 0 0 0 1 LINC00941 chr12:30954635 3'AG 30954635 Downstream 26bp
chr15 59347961 59347961 1 + G A UCEC 59347958 + 59347938 59347978 41 TGCAAGTCGGCCACAGGAGCCACGGAACCGCAGTAGGATTT TGCAAGTCGGCCACAGGAGCCACAGAACCGCAGTAGGATTT < 41bp 0.721310680763981 0.487919899926097 0.20048222 0.12663662 prediction 0.442621361527962 Functional Loss - RNF111 ENSG00000157450 CDS Human protein_coding chr15:59347958 chr15:59347961 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_80984 0 0 1 0 2 RNF111 chr15:59347881 3'AG 59347881 Downstream 81bp
chr15 59347961 59347961 1 + G A UCEC 59347958 + 59347938 59347978 41 TGCAAGTCGGCCACAGGAGCCACGGAACCGCAGTAGGATTT TGCAAGTCGGCCACAGGAGCCACAGAACCGCAGTAGGATTT < 41bp 0.721310680763981 0.487919899926097 0.20048222 0.12663662 prediction 0.442621361527962 Functional Loss - RNF111 ENSG00000157450 CDS Human protein_coding chr15:59347958 chr15:59347961 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_80984 0 0 1 0 2 RNF111 chr15:59348044 5'GT 59348044 Upstream 84bp
chr2 220396518 220396518 1 + G A SKCM 220396515 + 220396495 220396535 41 GGGAAGTGTTACACCTTCAACGCGGACCCGCGGAGCTCGCT GGGAAGTGTTACACCTTCAACGCAGACCCGCGGAGCTCGCT < 41bp 0.790750797477561 0.569445198932049 0.86180013 0.3990711 prediction 0.442611197091025 Functional Loss - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220396515 chr2:220396518 synonymous SNV . 0 24 hm5C_associated_SNPs_80988 0 0 1 0 1 ASIC4 chr2:220396480 3'AG 220396480 Downstream 39bp
chr8 66988913 66988913 1 + C T SKCM 66988911 + 66988891 66988931 41 AAAGAAAATTGGCCCTGAAACACCATCCAGACAAGAATCCA AAAGAAAATTGGCCCTGAAACATCATCCAGACAAGAATCCA < 41bp 0.721304518033714 0.433583957750146 0.07449895 0.068510056 prediction 0.442609036067428 Functional Loss - DNAJC5B ENSG00000147570 CDS Human protein_coding chr8:66988911 chr8:66988913 synonymous SNV . 0 23 hm5C_associated_SNPs_80989 0 0 0 0 1 DNAJC5B chr8:66988895 3'AG 66988895 Downstream 19bp
chr1 76226875 76226875 1 + G T CESC 76226873 + 76226853 76226893 41 AACTAGCTAGAATGAGTTACCAGAGAGCAGCTTGGGAGGTT AACTAGCTAGAATGAGTTACCATAGAGCAGCTTGGGAGGTT < 41bp 0.721303223394751 0.394740629941583 0.8637093 0.7402414 prediction 0.442606446789501 Functional Loss - ACADM ENSG00000117054 CDS Human protein_coding chr1:76226873 chr1:76226875 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_80991 0 0 1 4 1 ACADM chr1:76226807 3'AG 76226807 Downstream 69bp
chr6 33652667 33652667 1 + G A SKCM 33652664 + 33652644 33652684 41 CCAAGAACGAGAAGATCTTCCAGGAGAGCATCGGCCTGGCC CCAAGAACGAGAAGATCTTCCAGAAGAGCATCGGCCTGGCC < 41bp 0.742308298636536 0.521006262833338 0.75584775 0.30515292 prediction 0.442604071606397 Functional Loss - ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33652664 chr6:33652667 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_80992 0 0 1 0 1 ITPR3 chr6:33652720 5'GT 33652720 Upstream 54bp
chr14 68036668 68036668 1 + G T SARC 68036665 + 68036645 68036685 41 CCCTCCTGCCCTTGTTTCCCCTGGGTCTTTCTCTGGCCTGG CCCTCCTGCCCTTGTTTCCCCTGTGTCTTTCTCTGGCCTGG < 41bp 0.721297507104208 0.317994470768978 0.8593477 0.23939237 prediction 0.442595014208416 Functional Loss - PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68036665 chr14:68036668 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_80994 0 0 1 0 2 PLEKHH1 chr14:68036638 3'AG 68036638 Downstream 31bp
chr14 68036668 68036668 1 + G T SARC 68036665 + 68036645 68036685 41 CCCTCCTGCCCTTGTTTCCCCTGGGTCTTTCTCTGGCCTGG CCCTCCTGCCCTTGTTTCCCCTGTGTCTTTCTCTGGCCTGG < 41bp 0.721297507104208 0.317994470768978 0.8593477 0.23939237 prediction 0.442595014208416 Functional Loss - PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68036665 chr14:68036668 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_80994 0 0 1 0 2 PLEKHH1 chr14:68036729 5'GT 68036729 Upstream 62bp
chr4 38104684 38104684 1 + C T COAD 38104682 + 38104662 38104702 41 CTGAGCAATTCCACCTTAAACACCAGTTTCCCAGCAAACAG CTGAGCAATTCCACCTTAAACATCAGTTTCCCAGCAAACAG < 41bp 0.72129634004057 0.427953292482298 0.2239598 0.28723717 prediction 0.442592680081139 Functional Loss - TBC1D1 ENSG00000065882 CDS Human protein_coding chr4:38104682 chr4:38104684 synonymous SNV . 0 23 hm5C_associated_SNPs_80995 0 0 1 0 2 TBC1D1 chr4:38104620 3'AG 38104620 Downstream 65bp
chr4 38104684 38104684 1 + C T COAD 38104682 + 38104662 38104702 41 CTGAGCAATTCCACCTTAAACACCAGTTTCCCAGCAAACAG CTGAGCAATTCCACCTTAAACATCAGTTTCCCAGCAAACAG < 41bp 0.72129634004057 0.427953292482298 0.2239598 0.28723717 prediction 0.442592680081139 Functional Loss - TBC1D1 ENSG00000065882 CDS Human protein_coding chr4:38104682 chr4:38104684 synonymous SNV . 0 23 hm5C_associated_SNPs_80995 0 0 1 0 2 TBC1D1 chr4:38104778 5'GT 38104778 Upstream 95bp
chr2 33482546 33482546 1 + G A COAD 33482543 + 33482523 33482563 41 AGTGGAGGCCCTGACCTTCTCCCGGGAACACGGGCCAGGAG AGTGGAGGCCCTGACCTTCTCCCAGGAACACGGGCCAGGAG < 41bp 0.770216444624738 0.548920550958175 0.8351625 0.3602827 prediction 0.442591787333127 Functional Loss - LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33482543 chr2:33482546 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_80996 0 0 0 0 2 LTBP1 chr2:33482510 3'AG 33482510 Downstream 37bp
chr2 33482546 33482546 1 + G A COAD 33482543 + 33482523 33482563 41 AGTGGAGGCCCTGACCTTCTCCCGGGAACACGGGCCAGGAG AGTGGAGGCCCTGACCTTCTCCCAGGAACACGGGCCAGGAG < 41bp 0.770216444624738 0.548920550958175 0.8351625 0.3602827 prediction 0.442591787333127 Functional Loss - LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33482543 chr2:33482546 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_80996 0 0 0 0 2 LTBP1 chr2:33482578 5'GT 33482578 Upstream 33bp
chr8 134225301 134225301 1 + G A STAD 134225298 + 134225278 134225318 41 CAGCAGCTTGGGGACAACTGCACGGAGGCTGCCATCTGTGA CAGCAGCTTGGGGACAACTGCACAGAGGCTGCCATCTGTGA < 41bp 0.785632586726337 0.564337457214986 0.914765 0.73476493 prediction 0.442590259022703 Functional Loss - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134225298 chr8:134225301 synonymous SNV . 0 24 hm5C_associated_SNPs_80997 0 0 0 0 2 WISP1 chr8:134225363 5'GT 134225363 Upstream 63bp
chr8 134225301 134225301 1 + G A STAD 134225298 + 134225278 134225318 41 CAGCAGCTTGGGGACAACTGCACGGAGGCTGCCATCTGTGA CAGCAGCTTGGGGACAACTGCACAGAGGCTGCCATCTGTGA < 41bp 0.785632586726337 0.564337457214986 0.914765 0.73476493 prediction 0.442590259022703 Functional Loss - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134225298 chr8:134225301 synonymous SNV . 0 24 hm5C_associated_SNPs_80997 0 0 0 0 2 WISP1 chr8:134225386 5'GT 134225386 Upstream 86bp
chr18 8813172 8813172 1 + G A LUSC 8813169 + 8813149 8813189 41 AGGTGGAACTTCTCGACCGCCTGGACAGAGATCGGCAGGAG AGGTGGAACTTCTCGACCGCCTGAACAGAGATCGGCAGGAG < 41bp 0.762939854709377 0.541649374238274 0.40681496 0.23427206 prediction 0.442580960942206 Functional Loss - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8813169 chr18:8813172 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_80998 0 0 1 0 1 MTCL1 chr18:8813231 5'GT 8813231 Upstream 60bp
chr16 15489972 15489972 1 + C T UCEC 15489970 + 15489950 15489990 41 TGGCTGCGCCTGCTGGAGCGCGCGCTCCCGGGCCGAGCGCC TGGCTGCGCCTGCTGGAGCGCGTGCTCCCGGGCCGAGCGCC < 41bp 0.805284387021434 0.583994165211177 0.44454893 0.3961448 prediction 0.442580443620514 Functional Loss - MPV17L ENSG00000156968;ENSG00000261130 CDS Human other chr16:15489970 chr16:15489972 nonsynonymous SNV 0.247 1 23 hm5C_associated_SNPs_80999 0 0 1 0 1 MPV17L chr16:15490064 5'GT 15490064 Upstream 93bp
chr1 16378725 16378725 1 + A C rs12140311 16378724 + 16378704 16378744 41 TTCTCAGGGGCTGTGACCCACACCATCTCCACGGCGCTGCT TTCTCAGGGGCTGTGACCCACCCCATCTCCACGGCGCTGCT < 41bp 0.81810458120302 0.596817777768087 0.033594906 0.02303636 prediction 0.442573606869866 Functional Loss - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16378724 chr1:16378725 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_81003 0 0 0 0 1 CLCNKB chr1:16378693 3'AG 16378693 Downstream 33bp
chr5 161281186 161281186 1 + G T HNSC 161281183 + 161281163 161281203 41 GCTATGGACAGCCGTCATTACAAGATGAACTTAAAGACAAT GCTATGGACAGCCGTCATTACAATATGAACTTAAAGACAAT < 41bp 0.721286621003599 0.355266585908108 0.631929 0.11084542 prediction 0.442573242007198 Functional Loss - GABRA1 ENSG00000022355 CDS Human protein_coding chr5:161281183 chr5:161281186 nonsynonymous SNV 0.987 4 24 hm5C_associated_SNPs_81004 0 0 0 0 2 GABRA1 chr5:161281164 3'AG 161281164 Downstream 23bp
chr5 161281186 161281186 1 + G T HNSC 161281183 + 161281163 161281203 41 GCTATGGACAGCCGTCATTACAAGATGAACTTAAAGACAAT GCTATGGACAGCCGTCATTACAATATGAACTTAAAGACAAT < 41bp 0.721286621003599 0.355266585908108 0.631929 0.11084542 prediction 0.442573242007198 Functional Loss - GABRA1 ENSG00000022355 CDS Human protein_coding chr5:161281183 chr5:161281186 nonsynonymous SNV 0.987 4 24 hm5C_associated_SNPs_81004 0 0 0 0 2 GABRA1 chr5:161281276 5'GT 161281276 Upstream 91bp
chr16 20818300 20818300 1 + G C CESC 20818299 + 20818279 20818319 41 GAGCCAGAGAGGGAAGGGACCGAGAGACACCCCAGGAAGGT GAGCCAGAGAGGGAAGGGACCCAGAGACACCCCAGGAAGGT < 41bp 0.889154081589792 0.667868950242265 0.8600129 0.62008643 prediction 0.442570262695054 Functional Loss - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20818299 chr16:20818300 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_81005 0 0 0 0 1 REXO5 chr16:20818274 3'AG 20818274 Downstream 27bp
chr3 128614208 128614208 1 + G A UCEC 128614205 + 128614185 128614225 41 AGACTAGGGGAGATCATCAGCATGGATGGGTCCATCACTGT AGACTAGGGGAGATCATCAGCATAGATGGGTCCATCACTGT < 41bp 0.721283526972559 0.480276085454966 0.34391466 0.17407048 prediction 0.442567053945118 Functional Loss - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128614205 chr3:128614208 nonsynonymous SNV 0.023 1 24 hm5C_associated_SNPs_81006 0 0 1 0 2 ACAD9 chr3:128614153 3'AG 128614153 Downstream 56bp
chr3 128614208 128614208 1 + G A UCEC 128614205 + 128614185 128614225 41 AGACTAGGGGAGATCATCAGCATGGATGGGTCCATCACTGT AGACTAGGGGAGATCATCAGCATAGATGGGTCCATCACTGT < 41bp 0.721283526972559 0.480276085454966 0.34391466 0.17407048 prediction 0.442567053945118 Functional Loss - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128614205 chr3:128614208 nonsynonymous SNV 0.023 1 24 hm5C_associated_SNPs_81006 0 0 1 0 2 ACAD9 chr3:128614259 5'GT 128614259 Upstream 52bp
chr3 111794206 111794206 1 + G C HNSC 111794205 + 111794185 111794225 41 TCCGCCCTTCACCGCATCATCGGAGGCACAGACACCCTGGA TCCGCCCTTCACCGCATCATCCGAGGCACAGACACCCTGGA < 41bp 0.891015131296802 0.669733325188739 0.9503926 0.928357 prediction 0.442563612216126 Functional Loss - TMPRSS7 ENSG00000176040 CDS Human protein_coding chr3:111794205 chr3:111794206 nonsynonymous SNV 0.096 4 22 hm5C_associated_SNPs_81007 0 0 0 0 1 TMPRSS7 chr3:111794168 3'AG 111794168 Downstream 39bp
chr10 21805158 21805158 1 + C T UCEC 21805156 + 21805136 21805176 41 CCCAGGCTGGCCGGGCAGTACACCGGAGATGCTTTGGGGGC CCCAGGCTGGCCGGGCAGTACATCGGAGATGCTTTGGGGGC < 41bp 0.798078883198851 0.576797243832444 0.32059452 0.30542785 prediction 0.442563278732814 Functional Loss - SKIDA1 ENSG00000180592 CDS Human protein_coding chr10:21805156 chr10:21805158 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_81008 0 0 0 0 1 SKIDA1 chr10:21805125 3'AG 21805125 Downstream 34bp
chrX 154002935 154002935 1 + C T UCEC 154002932 + 154002912 154002952 41 TCTGGACAAGCATGGGAAGCCCACAGACAGCACACCTGCCA TCTGGACAAGCATGGGAAGCCCATAGACAGCACACCTGCCA < 41bp 0.722949087468147 0.501668387079369 0.22768378 0.2969891 prediction 0.442561400777556 Functional Loss - DKC1 ENSG00000130826 CDS Human protein_coding chrX:154002932 chrX:154002935 nonsynonymous SNV 0.420 2 24 hm5C_associated_SNPs_81010 0 0 1 0 3 DKC1 chrX:154002877 3'AG 154002877 Downstream 59bp
chrX 154002935 154002935 1 + C T UCEC 154002932 + 154002912 154002952 41 TCTGGACAAGCATGGGAAGCCCACAGACAGCACACCTGCCA TCTGGACAAGCATGGGAAGCCCATAGACAGCACACCTGCCA < 41bp 0.722949087468147 0.501668387079369 0.22768378 0.2969891 prediction 0.442561400777556 Functional Loss - DKC1 ENSG00000130826 CDS Human protein_coding chrX:154002932 chrX:154002935 nonsynonymous SNV 0.420 2 24 hm5C_associated_SNPs_81010 0 0 1 0 3 DKC1 chrX:154002965 5'GT 154002965 Upstream 31bp
chrX 154002935 154002935 1 + C T UCEC 154002932 + 154002912 154002952 41 TCTGGACAAGCATGGGAAGCCCACAGACAGCACACCTGCCA TCTGGACAAGCATGGGAAGCCCATAGACAGCACACCTGCCA < 41bp 0.722949087468147 0.501668387079369 0.22768378 0.2969891 prediction 0.442561400777556 Functional Loss - DKC1 ENSG00000130826 CDS Human protein_coding chrX:154002932 chrX:154002935 nonsynonymous SNV 0.420 2 24 hm5C_associated_SNPs_81010 0 0 1 0 3 DKC1 chrX:154002980 5'GT 154002980 Upstream 46bp
chr1 898773 898773 1 + C T COAD 898771 + 898751 898791 41 TCCTACGACCCCGTGACTAACACGTGGCAGCCGGAGGTGTC TCCTACGACCCCGTGACTAACATGTGGCAGCCGGAGGTGTC < 41bp 0.721280604208293 0.455933969018818 0.17534432 0.15298513 prediction 0.442561208416586 Functional Loss - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:898771 chr1:898773 nonsynonymous SNV 0.990 1 23 hm5C_associated_SNPs_81011 0 0 1 0 1 KLHL17 chr1:898717 3'AG 898717 Downstream 57bp
chr3 35778767 35778767 1 + G T LUAD 35778765 + 35778745 35778785 41 CCATGGTGGGGCAGTCCCAACAGCAGCCACCACAGCAGCAG CCATGGTGGGGCAGTCCCAACATCAGCCACCACAGCAGCAG < 41bp 0.898809398941904 0.677529179290806 0.3783601 0.12623149 prediction 0.442560439302197 Functional Loss - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35778765 chr3:35778767 nonsynonymous SNV 0.865 0 23 hm5C_associated_SNPs_81012 0 0 0 0 3 ARPP21 chr3:35778670 3'AG 35778670 Downstream 98bp
chr3 35778767 35778767 1 + G T LUAD 35778765 + 35778745 35778785 41 CCATGGTGGGGCAGTCCCAACAGCAGCCACCACAGCAGCAG CCATGGTGGGGCAGTCCCAACATCAGCCACCACAGCAGCAG < 41bp 0.898809398941904 0.677529179290806 0.3783601 0.12623149 prediction 0.442560439302197 Functional Loss - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35778765 chr3:35778767 nonsynonymous SNV 0.865 0 23 hm5C_associated_SNPs_81012 0 0 0 0 3 ARPP21 chr3:35778675 3'AG 35778675 Downstream 93bp
chr3 35778767 35778767 1 + G T LUAD 35778765 + 35778745 35778785 41 CCATGGTGGGGCAGTCCCAACAGCAGCCACCACAGCAGCAG CCATGGTGGGGCAGTCCCAACATCAGCCACCACAGCAGCAG < 41bp 0.898809398941904 0.677529179290806 0.3783601 0.12623149 prediction 0.442560439302197 Functional Loss - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35778765 chr3:35778767 nonsynonymous SNV 0.865 0 23 hm5C_associated_SNPs_81012 0 0 0 0 3 ARPP21 chr3:35778854 5'GT 35778854 Upstream 88bp
chr19 4954456 4954456 1 + C T rs374424470 4954454 + 4954434 4954474 41 GAGCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAA GAGCAGCAGGAGGGGGGCTTCGTGTCCCCCAGGACGGGCAA < 41bp 0.806351570501012 0.585074511092783 0.5454633 0.37695622 prediction 0.442554118816459 Functional Loss - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954454 chr19:4954456 . 0.000 0 23 hm5C_associated_SNPs_81014 0 0 0 0 2 UHRF1 chr19:4954362 3'AG 4954362 Downstream 95bp
chr19 4954456 4954456 1 + C T rs374424470 4954454 + 4954434 4954474 41 GAGCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAA GAGCAGCAGGAGGGGGGCTTCGTGTCCCCCAGGACGGGCAA < 41bp 0.806351570501012 0.585074511092783 0.5454633 0.37695622 prediction 0.442554118816459 Functional Loss - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954454 chr19:4954456 . 0.000 0 23 hm5C_associated_SNPs_81014 0 0 0 0 2 UHRF1 chr19:4954500 5'GT 4954500 Upstream 45bp
chr12 113871950 113871950 1 + G A rs116784032 113871947 + 113871927 113871967 41 GTTTCTCTGTAGGTCTGGGACGAGGCCAATCTGAGGGCGCA GTTTCTCTGTAGGTCTGGGACGAAGCCAATCTGAGGGCGCA < 41bp 0.797586256959145 0.576309657900342 0.8864226 0.52669287 prediction 0.442553198117606 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113871947 chr12:113871950 synonymous SNV . 0 24 hm5C_associated_SNPs_81016 0 0 0 0 2 SDSL chr12:113871939 3'AG 113871939 Downstream 12bp
chr12 113871950 113871950 1 + G A rs116784032 113871947 + 113871927 113871967 41 GTTTCTCTGTAGGTCTGGGACGAGGCCAATCTGAGGGCGCA GTTTCTCTGTAGGTCTGGGACGAAGCCAATCTGAGGGCGCA < 41bp 0.797586256959145 0.576309657900342 0.8864226 0.52669287 prediction 0.442553198117606 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113871947 chr12:113871950 synonymous SNV . 0 24 hm5C_associated_SNPs_81016 0 0 0 0 2 SDSL chr12:113872027 5'GT 113872027 Upstream 78bp
chr15 89392760 89392760 1 + G T UCEC 89392757 + 89392737 89392777 41 CACAATGCTACGCTGGCCACCACGGGCCAGCTCTACGCCGC CACAATGCTACGCTGGCCACCACTGGCCAGCTCTACGCCGC < 41bp 0.721274086768591 0.32315912855193 0.38188925 0.05098495 prediction 0.442548173537182 Functional Loss - ACAN ENSG00000157766 CDS Human protein_coding chr15:89392757 chr15:89392760 synonymous SNV . 0 24 hm5C_associated_SNPs_81017 0 0 0 0 1 ACAN chr15:89392669 3'AG 89392669 Downstream 92bp
chr11 124735550 124735550 1 + C T SKCM 124735548 + 124735528 124735568 41 CTGGCCGGGGACATCTCCAACTCCAGCGAGCTGCTCTTGGG CTGGCCGGGGACATCTCCAACTTCAGCGAGCTGCTCTTGGG < 41bp 0.721270790672245 0.445346385280308 0.961226 0.81525844 prediction 0.442541581344489 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124735548 chr11:124735550 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_81019 0 0 0 0 1 ROBO3 chr11:124735633 5'GT 124735633 Upstream 84bp
chr17 33316655 33316655 1 + G T LUSC 33316652 + 33316632 33316672 41 ACACGAAGACCCAGATCATCCAGGACTTCCTTCGGAAAGGC ACACGAAGACCCAGATCATCCAGTACTTCCTTCGGAAAGGC < 41bp 0.930472873376191 0.709203405670297 0.37320235 0.16559523 prediction 0.442538935411788 Functional Loss - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33316652 chr17:33316655 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_81021 0 0 1 0 1 LIG3 chr17:33316682 5'GT 33316682 Upstream 28bp
chr11 134158717 134158717 1 + C T UCEC 134158715 + 134158695 134158735 41 CGCCAGGCAGGCCCTGTCATCGCGGTGCAAGTGGAGAATGA CGCCAGGCAGGCCCTGTCATCGTGGTGCAAGTGGAGAATGA < 41bp 0.837493341876744 0.616227281782072 0.88925326 0.8909261 prediction 0.442532120189345 Functional Loss - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134158715 chr11:134158717 nonsynonymous SNV 0.041 4 23 hm5C_associated_SNPs_81024 0 0 0 0 2 GLB1L3 chr11:134158692 3'AG 134158692 Downstream 26bp
chr11 134158717 134158717 1 + C T UCEC 134158715 + 134158695 134158735 41 CGCCAGGCAGGCCCTGTCATCGCGGTGCAAGTGGAGAATGA CGCCAGGCAGGCCCTGTCATCGTGGTGCAAGTGGAGAATGA < 41bp 0.837493341876744 0.616227281782072 0.88925326 0.8909261 prediction 0.442532120189345 Functional Loss - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134158715 chr11:134158717 nonsynonymous SNV 0.041 4 23 hm5C_associated_SNPs_81024 0 0 0 0 2 GLB1L3 chr11:134158784 5'GT 134158784 Upstream 68bp
chr17 38240216 38240216 1 + C T rs2230701 38240213 + 38240193 38240233 41 TGCCGCTTCAAGAAGTGCATCGCCGTGGGCATGGCCATGGA TGCCGCTTCAAGAAGTGCATCGCTGTGGGCATGGCCATGGA < 41bp 0.739298123120182 0.518034007691742 0.45229512 0.24068996 prediction 0.442528230856878 Functional Loss - THRA ENSG00000126351 CDS Human protein_coding chr17:38240213 chr17:38240216 synonymous SNV . 0 24 hm5C_associated_SNPs_81026 1 1 0 0 1 THRA chr17:38240235 5'GT 38240235 Upstream 20bp
chr2 3743357 3743357 1 + A C UCEC 3743353 + 3743333 3743373 41 TTCGGTACTGGACAAAAAGACTGGACTGCAACTGACCCCAA TTCGGTACTGGACAAAAAGACTGGCCTGCAACTGACCCCAA < 41bp 0.85625386274368 0.634991738292199 0.5228595 0.42801803 prediction 0.442524248902963 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3743353 chr2:3743357 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_81027 0 0 0 0 1 ALLC chr2:3743307 3'AG 3743307 Downstream 51bp
chr15 65239696 65239696 1 + C T SKCM 65239693 + 65239673 65239713 41 ATCGGCAGGAAACACAGCAGCTCCGTTCTGTGCTGTGGCGG ATCGGCAGGAAACACAGCAGCTCTGTTCTGTGCTGTGGCGG < 41bp 0.751312664101496 0.530050915438697 0.1427984 0.12686732 prediction 0.442523497325598 Functional Loss - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65239693 chr15:65239696 nonsynonymous SNV 0.959 2 24 hm5C_associated_SNPs_81028 0 0 0 0 1 ANKDD1A chr15:65239624 3'AG 65239624 Downstream 73bp
chr12 81624881 81624881 1 + G T LUSC 81624879 + 81624859 81624899 41 TTTCAGGACTCTGGAAGAATCAGGAAGCATTCAAGCATTTA TTTCAGGACTCTGGAAGAATCATGAAGCATTCAAGCATTTA < 41bp 0.721260427216474 0.384159729348167 0.44665578 0.112198085 prediction 0.442520854432948 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81624879 chr12:81624881 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_81029 0 0 1 0 2 ACSS3 chr12:81624836 3'AG 81624836 Downstream 46bp
chr12 81624881 81624881 1 + G T LUSC 81624879 + 81624859 81624899 41 TTTCAGGACTCTGGAAGAATCAGGAAGCATTCAAGCATTTA TTTCAGGACTCTGGAAGAATCATGAAGCATTCAAGCATTTA < 41bp 0.721260427216474 0.384159729348167 0.44665578 0.112198085 prediction 0.442520854432948 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81624879 chr12:81624881 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_81029 0 0 1 0 2 ACSS3 chr12:81624917 5'GT 81624917 Upstream 37bp
chr12 81624882 81624882 1 + G A SKCM 81624879 + 81624859 81624899 41 TTTCAGGACTCTGGAAGAATCAGGAAGCATTCAAGCATTTA TTTCAGGACTCTGGAAGAATCAGAAAGCATTCAAGCATTTA < 41bp 0.721260427216474 0.496078392305185 0.44665578 0.20270434 prediction 0.442520854432948 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81624879 chr12:81624882 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_81030 0 0 1 0 2 ACSS3 chr12:81624836 3'AG 81624836 Downstream 47bp
chr12 81624882 81624882 1 + G A SKCM 81624879 + 81624859 81624899 41 TTTCAGGACTCTGGAAGAATCAGGAAGCATTCAAGCATTTA TTTCAGGACTCTGGAAGAATCAGAAAGCATTCAAGCATTTA < 41bp 0.721260427216474 0.496078392305185 0.44665578 0.20270434 prediction 0.442520854432948 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81624879 chr12:81624882 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_81030 0 0 1 0 2 ACSS3 chr12:81624917 5'GT 81624917 Upstream 36bp
chr19 50040426 50040426 1 + C T rs112559991 50040424 + 50040404 50040444 41 AGCTGACAGCCTTCCTGCACCCCGAGGAGTTCCCTCACATG AGCTGACAGCCTTCCTGCACCCTGAGGAGTTCCCTCACATG < 41bp 0.721259863869052 0.444979995585603 0.037176102 0.12808946 prediction 0.442519727738104 Functional Loss - RCN3 ENSG00000142552 CDS Human protein_coding chr19:50040424 chr19:50040426 synonymous SNV . 0 23 hm5C_associated_SNPs_81031 0 0 1 0 1 RCN3 chr19:50040462 5'GT 50040462 Upstream 37bp
chr1 192780130 192780130 1 + G A UCEC 192780127 + 192780107 192780147 41 TCAGATGGTCTTGCTGCATTCAGGGCTTTTTTAAAGTCGGA TCAGATGGTCTTGCTGCATTCAGAGCTTTTTTAAAGTCGGA < 41bp 0.755490389467255 0.534234280142174 0.90314305 0.87808365 prediction 0.442512218650162 Functional Loss - RGS2 ENSG00000116741 CDS Human protein_coding chr1:192780127 chr1:192780130 synonymous SNV . 0 24 hm5C_associated_SNPs_81034 0 0 1 0 1 RGS2 chr1:192780111 3'AG 192780111 Downstream 20bp
chr7 141722076 141722076 1 + C T HNSC 141722074 + 141722054 141722094 41 CCACCTGTGTCTAGGTTTGACTCGAGCATTGGGCCCCTACT CCACCTGTGTCTAGGTTTGACTTGAGCATTGGGCCCCTACT < 41bp 0.721247040414776 0.442047946134784 0.040899754 0.026502639 prediction 0.442494080829552 Functional Loss - MGAM ENSG00000257335 CDS Human protein_coding chr7:141722074 chr7:141722076 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_81037 0 0 0 0 1 MGAM chr7:141722068 3'AG 141722068 Downstream 9bp
chr2 234079726 234079726 1 + G A rs371650284 234079723 + 234079703 234079743 41 GTTTCAGAGGAGGAAGAAATCACGTTTGCCCCAACCTACCG GTTTCAGAGGAGGAAGAAATCACATTTGCCCCAACCTACCG < 41bp 0.762517195384101 0.541270968302203 0.8208178 0.5253382 prediction 0.442492454163796 Functional Loss - INPP5D ENSG00000168918 CDS Human protein_coding chr2:234079723 chr2:234079726 synonymous SNV . 0 24 hm5C_associated_SNPs_81038 0 0 1 0 2 INPP5D chr2:234079710 3'AG 234079710 Downstream 17bp
chr2 234079726 234079726 1 + G A rs371650284 234079723 + 234079703 234079743 41 GTTTCAGAGGAGGAAGAAATCACGTTTGCCCCAACCTACCG GTTTCAGAGGAGGAAGAAATCACATTTGCCCCAACCTACCG < 41bp 0.762517195384101 0.541270968302203 0.8208178 0.5253382 prediction 0.442492454163796 Functional Loss - INPP5D ENSG00000168918 CDS Human protein_coding chr2:234079723 chr2:234079726 synonymous SNV . 0 24 hm5C_associated_SNPs_81038 0 0 1 0 2 INPP5D chr2:234079798 5'GT 234079798 Upstream 73bp
chr17 4685809 4685809 1 + G A STAD 4685806 + 4685786 4685826 41 CACCACATCCAGATGCTGCGCTCGGTCTTCTCCTCGGCGTT CACCACATCCAGATGCTGCGCTCAGTCTTCTCCTCGGCGTT < 41bp 0.721244044623107 0.470911769271668 0.19840318 0.14288336 prediction 0.442488089246214 Functional Loss - TM4SF5 ENSG00000142484 CDS Human protein_coding chr17:4685806 chr17:4685809 synonymous SNV . 0 24 hm5C_associated_SNPs_81039 0 0 0 0 1 TM4SF5 chr17:4685798 3'AG 4685798 Downstream 12bp
chr1 211529799 211529799 1 + G A UCEC 211529796 + 211529776 211529816 41 GATGTAATGCCAAGGTTATTCTGGGCCGGTACCAGGTTGGT GATGTAATGCCAAGGTTATTCTGAGCCGGTACCAGGTTGGT < 41bp 0.775402622436183 0.554159508063963 0.54918146 0.33736885 prediction 0.44248622874444 Functional Loss - TRAF5 ENSG00000082512 CDS Human protein_coding chr1:211529796 chr1:211529799 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_81040 0 0 0 0 2 TRAF5 chr1:211529709 3'AG 211529709 Downstream 91bp
chr1 211529799 211529799 1 + G A UCEC 211529796 + 211529776 211529816 41 GATGTAATGCCAAGGTTATTCTGGGCCGGTACCAGGTTGGT GATGTAATGCCAAGGTTATTCTGAGCCGGTACCAGGTTGGT < 41bp 0.775402622436183 0.554159508063963 0.54918146 0.33736885 prediction 0.44248622874444 Functional Loss - TRAF5 ENSG00000082512 CDS Human protein_coding chr1:211529796 chr1:211529799 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_81040 0 0 0 0 2 TRAF5 chr1:211529810 5'GT 211529810 Upstream 12bp
chr1 110587676 110587676 1 + C T STAD 110587674 + 110587654 110587694 41 TGGGGCTGCCCAGGCCAATCCACGAAAGCATCAAGACTCTG TGGGGCTGCCCAGGCCAATCCATGAAAGCATCAAGACTCTG < 41bp 0.861331827747098 0.640088915322766 0.60392696 0.5882031 prediction 0.442485824848662 Functional Loss - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110587674 chr1:110587676 synonymous SNV . 0 23 hm5C_associated_SNPs_81041 0 0 1 0 2 STRIP1 chr1:110587637 3'AG 110587637 Downstream 40bp
chr1 110587676 110587676 1 + C T STAD 110587674 + 110587654 110587694 41 TGGGGCTGCCCAGGCCAATCCACGAAAGCATCAAGACTCTG TGGGGCTGCCCAGGCCAATCCATGAAAGCATCAAGACTCTG < 41bp 0.861331827747098 0.640088915322766 0.60392696 0.5882031 prediction 0.442485824848662 Functional Loss - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110587674 chr1:110587676 synonymous SNV . 0 23 hm5C_associated_SNPs_81041 0 0 1 0 2 STRIP1 chr1:110587700 5'GT 110587700 Upstream 25bp
chr1 10166309 10166309 1 + G A rs146983740 10166306 + 10166286 10166326 41 AGTTTCTGGAGCTCTGTTCCCGTGATGGGCCCGTCTCTTGC AGTTTCTGGAGCTCTGTTCCCGTAATGGGCCCGTCTCTTGC < 41bp 0.785815038829254 0.564575602327956 0.4010133 0.22929454 prediction 0.442478873002595 Functional Loss - UBE4B ENSG00000130939 CDS Human protein_coding chr1:10166306 chr1:10166309 synonymous SNV . 0 24 hm5C_associated_SNPs_81046 0 0 1 0 1 UBE4B chr1:10166255 3'AG 10166255 Downstream 55bp
chr1 180217458 180217458 1 + G A LGG 180217455 + 180217435 180217475 41 CTGGCTGCAACCAGCACATCCTGGACAAGTTCATCCTGAAG CTGGCTGCAACCAGCACATCCTGAACAAGTTCATCCTGAAG < 41bp 0.790715542390951 0.569477082721357 0.13705909 0.06864157 prediction 0.442476919339189 Functional Loss - LHX4 ENSG00000121454 CDS Human protein_coding chr1:180217455 chr1:180217458 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_81047 0 0 0 0 1 LHX4 chr1:180217420 3'AG 180217420 Downstream 39bp
chr1 45973091 45973091 1 + G A UCEC 45973088 + 45973068 45973108 41 TACCGCTGCCAGGACCTACCCTGGCCTTCCTGGTACTCAGC TACCGCTGCCAGGACCTACCCTGACCTTCCTGGTACTCAGC < 41bp 0.721237639575302 0.482386312719079 0.90265816 0.19396067 prediction 0.442475279150605 Functional Loss - MMACHC ENSG00000132763 CDS Human protein_coding chr1:45973088 chr1:45973091 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_81049 0 0 0 0 1 MMACHC chr1:45973028 3'AG 45973028 Downstream 64bp
chr13 78176801 78176801 1 + C T SKCM 78176799 + 78176779 78176819 41 TTTTCCAAAGAAGACAAAATCTCGAATCTGTTGCTAAAGTG TTTTCCAAAGAAGACAAAATCTTGAATCTGTTGCTAAAGTG < 41bp 0.848122253444466 0.626885262154509 0.88264704 0.18665409 prediction 0.442473982579914 Functional Loss - SCEL ENSG00000136155 CDS Human protein_coding chr13:78176799 chr13:78176801 synonymous SNV . 0 23 hm5C_associated_SNPs_81050 0 0 0 0 2 SCEL chr13:78176789 3'AG 78176789 Downstream 13bp
chr13 78176801 78176801 1 + C T SKCM 78176799 + 78176779 78176819 41 TTTTCCAAAGAAGACAAAATCTCGAATCTGTTGCTAAAGTG TTTTCCAAAGAAGACAAAATCTTGAATCTGTTGCTAAAGTG < 41bp 0.848122253444466 0.626885262154509 0.88264704 0.18665409 prediction 0.442473982579914 Functional Loss - SCEL ENSG00000136155 CDS Human protein_coding chr13:78176799 chr13:78176801 synonymous SNV . 0 23 hm5C_associated_SNPs_81050 0 0 0 0 2 SCEL chr13:78176848 5'GT 78176848 Upstream 48bp
chrX 86877370 86877370 1 + G A SKCM 86877367 + 86877347 86877387 41 GGCATGATGTGCAGAATAGGCAAGGAGAACTGGGGATGCTG GGCATGATGTGCAGAATAGGCAAAGAGAACTGGGGATGCTG < 41bp 0.75898822709817 0.537752373696423 0.6170398 0.32070607 prediction 0.442471706803493 Functional Loss - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86877367 chrX:86877370 nonsynonymous SNV 0.492 0 24 hm5C_associated_SNPs_81051 0 0 0 0 1 KLHL4 chrX:86877423 5'GT 86877423 Upstream 54bp
chr13 28367190 28367190 1 + G A rs540823609 28367187 + 28367167 28367207 41 GCTGCTGCCGCCGCGCTCTACCAGACCTCCTACCCGCTGCC GCTGCTGCCGCCGCGCTCTACCAAACCTCCTACCCGCTGCC < 41bp 0.787572179376663 0.566336536925126 0.40487725 0.13533184 prediction 0.442471284903075 Functional Loss - GSX1 ENSG00000169840 CDS Human protein_coding chr13:28367187 chr13:28367190 synonymous SNV . 0 24 hm5C_associated_SNPs_81052 0 0 0 0 1 GSX1 chr13:28367239 5'GT 28367239 Upstream 50bp
chr17 40639346 40639346 1 + C T SKCM 40639343 + 40639323 40639363 41 GCAGAGGTCTGGTGCCCTGTCACCGACCTTGACTCCATCCA GCAGAGGTCTGGTGCCCTGTCACTGACCTTGACTCCATCCA < 41bp 0.734339726954003 0.51310670482024 0.15664363 0.11912915 prediction 0.442466044267526 Functional Loss - ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40639343 chr17:40639346 synonymous SNV . 0 24 hm5C_associated_SNPs_81054 0 0 1 0 1 ATP6V0A1 chr17:40639385 5'GT 40639385 Upstream 40bp
chr2 79348716 79348716 1 + G T HNSC 79348714 + 79348694 79348734 41 AGGCCCAGACAGAGTTGCCCCAGGCCCGGATCAGCTGCCCA AGGCCCAGACAGAGTTGCCCCATGCCCGGATCAGCTGCCCA < 41bp 0.721226943088374 0.356654194189145 0.7510439 0.28233153 prediction 0.442453886176747 Functional Loss - REG1A ENSG00000115386 CDS Human protein_coding chr2:79348714 chr2:79348716 nonsynonymous SNV 0.007 1 23 hm5C_associated_SNPs_81057 0 0 0 0 2 REG1A chr2:79348688 3'AG 79348688 Downstream 29bp
chr2 79348716 79348716 1 + G T HNSC 79348714 + 79348694 79348734 41 AGGCCCAGACAGAGTTGCCCCAGGCCCGGATCAGCTGCCCA AGGCCCAGACAGAGTTGCCCCATGCCCGGATCAGCTGCCCA < 41bp 0.721226943088374 0.356654194189145 0.7510439 0.28233153 prediction 0.442453886176747 Functional Loss - REG1A ENSG00000115386 CDS Human protein_coding chr2:79348714 chr2:79348716 nonsynonymous SNV 0.007 1 23 hm5C_associated_SNPs_81057 0 0 0 0 2 REG1A chr2:79348806 5'GT 79348806 Upstream 91bp
chr15 65219162 65219162 1 + C T LUAD 65219160 + 65219140 65219180 41 AGCTGGATGCTCTGGACTTCCTCGTGGGCTCTGGCTGTGAC AGCTGGATGCTCTGGACTTCCTTGTGGGCTCTGGCTGTGAC < 41bp 0.86196503101135 0.640740744852505 0.049095213 0.04987043 prediction 0.442448572317691 Functional Loss - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65219160 chr15:65219162 synonymous SNV . 0 23 hm5C_associated_SNPs_81059 0 0 0 0 2 ANKDD1A chr15:65219100 3'AG 65219100 Downstream 63bp
chr15 65219162 65219162 1 + C T LUAD 65219160 + 65219140 65219180 41 AGCTGGATGCTCTGGACTTCCTCGTGGGCTCTGGCTGTGAC AGCTGGATGCTCTGGACTTCCTTGTGGGCTCTGGCTGTGAC < 41bp 0.86196503101135 0.640740744852505 0.049095213 0.04987043 prediction 0.442448572317691 Functional Loss - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65219160 chr15:65219162 synonymous SNV . 0 23 hm5C_associated_SNPs_81059 0 0 0 0 2 ANKDD1A chr15:65219198 5'GT 65219198 Upstream 37bp
chr19 33697172 33697172 1 + C T ESCA 33697170 + 33697150 33697190 41 GCCGTGCCCCGCAAGGTCATCACGGCGGCGCTCATTGGCAG GCCGTGCCCCGCAAGGTCATCATGGCGGCGCTCATTGGCAG < 41bp 0.770578680664979 0.549355663311098 0.88460815 0.5745222 prediction 0.442446034707762 Functional Loss - LRP3 ENSG00000130881 CDS Human protein_coding chr19:33697170 chr19:33697172 nonsynonymous SNV 0.898 5 23 hm5C_associated_SNPs_81060 0 0 0 0 1 LRP3 chr19:33697268 5'GT 33697268 Upstream 97bp
chr6 167708113 167708113 1 + G A SKCM 167708110 + 167708090 167708130 41 CACCGCTCCTCATCGAGAGGCTGGGCTGCAAGGGGACCATC CACCGCTCCTCATCGAGAGGCTGAGCTGCAAGGGGACCATC < 41bp 0.797905347364112 0.576687913534581 0.91277736 0.8181205 prediction 0.44243486765906 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167708110 chr6:167708113 nonsynonymous SNV 0.647 5 24 hm5C_associated_SNPs_81062 0 0 0 0 1 UNC93A chr6:167708186 5'GT 167708186 Upstream 74bp
chr11 12243246 12243246 1 + C T UCEC 12243244 + 12243224 12243264 41 GGCTTCCTGGCAGCCTTTGACACGGCATGGATGGTGAAGAG GGCTTCCTGGCAGCCTTTGACATGGCATGGATGGTGAAGAG < 41bp 0.843839014558574 0.622624908155324 0.44390717 0.5681322 prediction 0.4424282128065 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12243244 chr11:12243246 nonsynonymous SNV 0.979 5 23 hm5C_associated_SNPs_81065 0 0 0 0 2 MICAL2 chr11:12243191 3'AG 12243191 Downstream 56bp
chr11 12243246 12243246 1 + C T UCEC 12243244 + 12243224 12243264 41 GGCTTCCTGGCAGCCTTTGACACGGCATGGATGGTGAAGAG GGCTTCCTGGCAGCCTTTGACATGGCATGGATGGTGAAGAG < 41bp 0.843839014558574 0.622624908155324 0.44390717 0.5681322 prediction 0.4424282128065 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12243244 chr11:12243246 nonsynonymous SNV 0.979 5 23 hm5C_associated_SNPs_81065 0 0 0 0 2 MICAL2 chr11:12243306 5'GT 12243306 Upstream 61bp
chr16 57604376 57604376 1 + G A UCEC 57604373 + 57604353 57604393 41 CTTTCCCTCTCTGTCAAGAGCTCGGTATACGGACCCTGCAC CTTTCCCTCTCTGTCAAGAGCTCAGTATACGGACCCTGCAC < 41bp 0.817056363890553 0.595847725043643 0.0738416 0.057527572 prediction 0.442417277693819 Functional Loss - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57604373 chr16:57604376 synonymous SNV . 0 24 hm5C_associated_SNPs_81068 0 0 0 0 2 ADGRG5 chr16:57604330 3'AG 57604330 Downstream 47bp
chr16 57604376 57604376 1 + G A UCEC 57604373 + 57604353 57604393 41 CTTTCCCTCTCTGTCAAGAGCTCGGTATACGGACCCTGCAC CTTTCCCTCTCTGTCAAGAGCTCAGTATACGGACCCTGCAC < 41bp 0.817056363890553 0.595847725043643 0.0738416 0.057527572 prediction 0.442417277693819 Functional Loss - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57604373 chr16:57604376 synonymous SNV . 0 24 hm5C_associated_SNPs_81068 0 0 0 0 2 ADGRG5 chr16:57604447 5'GT 57604447 Upstream 72bp
chr7 128490927 128490927 1 + G A STAD 128490924 + 128490904 128490944 41 GACAACAAGGACGGCACCATCACGGTGAGGTATGCACCCAC GACAACAAGGACGGCACCATCACAGTGAGGTATGCACCCAC < 41bp 0.768207510784254 0.547000026964529 0.89048475 0.38079175 prediction 0.442414967639449 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128490924 chr7:128490927 synonymous SNV . 0 24 hm5C_associated_SNPs_81070 0 0 0 0 2 FLNC chr7:128490857 3'AG 128490857 Downstream 71bp
chr7 128490927 128490927 1 + G A STAD 128490924 + 128490904 128490944 41 GACAACAAGGACGGCACCATCACGGTGAGGTATGCACCCAC GACAACAAGGACGGCACCATCACAGTGAGGTATGCACCCAC < 41bp 0.768207510784254 0.547000026964529 0.89048475 0.38079175 prediction 0.442414967639449 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128490924 chr7:128490927 synonymous SNV . 0 24 hm5C_associated_SNPs_81070 0 0 0 0 2 FLNC chr7:128490997 5'GT 128490997 Upstream 71bp
chr7 98988806 98988806 1 + C T SARC 98988804 + 98988784 98988824 41 CAGCTCTCTCCCCTCAGCGTCGCGACTCTGGCCTCTGAAAC CAGCTCTCTCCCCTCAGCGTCGTGACTCTGGCCTCTGAAAC < 41bp 0.721206727759025 0.439321549985904 0.11431062 0.18611345 prediction 0.442413455518049 Functional Loss - ARPC1B ENSG00000130429 CDS Human protein_coding chr7:98988804 chr7:98988806 nonsynonymous SNV 0.100 0 23 hm5C_associated_SNPs_81072 0 0 1 0 1 ARPC1B chr7:98988876 5'GT 98988876 Upstream 71bp
chr3 44283817 44283817 1 + C T UCEC 44283815 + 44283795 44283835 41 GGGCGCAGGGGCCCGGTGAGCCCGTCAGACTCGTCAGACCC GGGCGCAGGGGCCCGGTGAGCCTGTCAGACTCGTCAGACCC < 41bp 0.721205926519009 0.48725848007089 0.35838926 0.28366143 prediction 0.442411853038017 Functional Loss - TOPAZ1 ENSG00000173769 CDS Human protein_coding chr3:44283815 chr3:44283817 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_81073 0 0 0 0 1 TOPAZ1 chr3:44283891 5'GT 44283891 Upstream 75bp
chr19 14023192 14023192 1 + G A CESC 14023189 + 14023169 14023209 41 CCAGCCTGTGCATGAGAGACCCGGATGAGGATGAGGAGGAG CCAGCCTGTGCATGAGAGACCCGAATGAGGATGAGGAGGAG < 41bp 0.721200650559471 0.477292969043938 0.27817374 0.13184127 prediction 0.442401301118942 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14023189 chr19:14023192 nonsynonymous SNV 0.501 3 24 hm5C_associated_SNPs_81074 0 0 1 0 2 CC2D1A chr19:14023136 3'AG 14023136 Downstream 57bp
chr19 14023192 14023192 1 + G A CESC 14023189 + 14023169 14023209 41 CCAGCCTGTGCATGAGAGACCCGGATGAGGATGAGGAGGAG CCAGCCTGTGCATGAGAGACCCGAATGAGGATGAGGAGGAG < 41bp 0.721200650559471 0.477292969043938 0.27817374 0.13184127 prediction 0.442401301118942 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14023189 chr19:14023192 nonsynonymous SNV 0.501 3 24 hm5C_associated_SNPs_81074 0 0 1 0 2 CC2D1A chr19:14023251 5'GT 14023251 Upstream 60bp
chr2 98744740 98744740 1 + T C rs143077276 98744739 + 98744719 98744759 41 CTTTGTGGTGGGGGATGTTCCTGAAGAATCCAAGGAGCTTC CTTTGTGGTGGGGGATGTTCCCGAAGAATCCAAGGAGCTTC < 41bp 0.750562802756257 0.529365607146526 0.33263808 0.8065969 prediction 0.442394391219462 Functional Loss - VWA3B ENSG00000168658 CDS Human protein_coding chr2:98744739 chr2:98744740 synonymous SNV . 0 22 hm5C_associated_SNPs_81075 0 0 0 1 1 VWA3B chr2:98744702 3'AG 98744702 Downstream 39bp
chr19 10217225 10217225 1 + G C BRCA 10217224 + 10217204 10217244 41 CAGGCGCAGCTCCGCAACCTCGAGGCCTATGCCGCGAACCC CAGGCGCAGCTCCGCAACCTCCAGGCCTATGCCGCGAACCC < 41bp 0.887204460363254 0.666013653801223 0.935823 0.9049833 prediction 0.442381613124061 Functional Loss - PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10217224 chr19:10217225 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_81080 0 0 1 0 1 PPAN;PPAN-P2RY11 chr19:10217177 3'AG 10217177 Downstream 49bp
chr9 71867813 71867813 1 + C T UCEC 71867811 + 71867791 71867831 41 GACCCTGGCACGCCCCAGCACACGAGGTAAGGGCTGCCTAG GACCCTGGCACGCCCCAGCACATGAGGTAAGGGCTGCCTAG < 41bp 0.839472202906172 0.618282036280139 0.51013404 0.6097037 prediction 0.442380333252066 Functional Loss - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71867811 chr9:71867813 nonsynonymous SNV 0.020 0 23 hm5C_associated_SNPs_81081 0 0 1 0 2 TJP2 chr9:71867731 3'AG 71867731 Downstream 83bp
chr9 71867813 71867813 1 + C T UCEC 71867811 + 71867791 71867831 41 GACCCTGGCACGCCCCAGCACACGAGGTAAGGGCTGCCTAG GACCCTGGCACGCCCCAGCACATGAGGTAAGGGCTGCCTAG < 41bp 0.839472202906172 0.618282036280139 0.51013404 0.6097037 prediction 0.442380333252066 Functional Loss - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71867811 chr9:71867813 nonsynonymous SNV 0.020 0 23 hm5C_associated_SNPs_81081 0 0 1 0 2 TJP2 chr9:71867816 5'GT 71867816 Upstream 4bp
chr11 7631629 7631629 1 + G T LUAD 7631627 + 7631607 7631647 41 TGGAGAAGGAGCAGAGAGAGCAGGAGGAGAAGCAGAGAAAA TGGAGAAGGAGCAGAGAGAGCATGAGGAGAAGCAGAGAAAA < 41bp 0.789344066784939 0.568155153746653 0.79262364 0.5066979 prediction 0.442377826076573 Functional Loss - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7631627 chr11:7631629 nonsynonymous SNV 0.983 0 23 hm5C_associated_SNPs_81082 0 0 1 0 1 PPFIBP2 chr11:7631653 5'GT 7631653 Upstream 25bp
chrX 128902323 128902323 1 + G T LUSC 128902321 + 128902301 128902341 41 GGGAGAAGGTGGGTCCAGAGCTGCAGAGGCGCCAGCTACTA GGGAGAAGGTGGGTCCAGAGCTTCAGAGGCGCCAGCTACTA < 41bp 0.895067977608259 0.673882795289795 0.39530912 0.30136764 prediction 0.442370364636928 Functional Loss - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128902321 chrX:128902323 synonymous SNV . 0 23 hm5C_associated_SNPs_81084 0 0 0 0 1 XPNPEP2 chrX:128902267 3'AG 128902267 Downstream 57bp
chr6 69646512 69646512 1 + A T SKCM 69646508 + 69646488 69646528 41 AGAACTTGTGTATCACCTTACGGGACACACTGCAGCGGCCC AGAACTTGTGTATCACCTTACGGGTCACACTGCAGCGGCCC < 41bp 0.721184140526386 0.44404577854795 0.90795577 0.77832127 prediction 0.442368281052773 Functional Loss - ADGRB3 ENSG00000135298 CDS Human protein_coding chr6:69646508 chr6:69646512 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_81085 0 0 0 0 1 ADGRB3 chr6:69646572 5'GT 69646572 Upstream 61bp
chr9 127076235 127076235 1 + G A CESC 127076232 + 127076212 127076252 41 TGATGGACGCCAAGGCGAGGCAGGACTGTGTCAAGGAGATC TGATGGACGCCAAGGCGAGGCAGAACTGTGTCAAGGAGATC < 41bp 0.792183669323839 0.57100095809364 0.059899777 0.041027516 prediction 0.442365422460397 Functional Loss - NEK6 ENSG00000119408 CDS Human protein_coding chr9:127076232 chr9:127076235 nonsynonymous SNV 0.961 3 24 hm5C_associated_SNPs_81086 0 0 1 0 2 NEK6 chr9:127076202 3'AG 127076202 Downstream 34bp
chr9 127076235 127076235 1 + G A CESC 127076232 + 127076212 127076252 41 TGATGGACGCCAAGGCGAGGCAGGACTGTGTCAAGGAGATC TGATGGACGCCAAGGCGAGGCAGAACTGTGTCAAGGAGATC < 41bp 0.792183669323839 0.57100095809364 0.059899777 0.041027516 prediction 0.442365422460397 Functional Loss - NEK6 ENSG00000119408 CDS Human protein_coding chr9:127076232 chr9:127076235 nonsynonymous SNV 0.961 3 24 hm5C_associated_SNPs_81086 0 0 1 0 2 NEK6 chr9:127076264 5'GT 127076264 Upstream 30bp
chr17 48674232 48674232 1 + C T UCEC 48674230 + 48674210 48674250 41 CTGGGCCCTGCGTCGCGCCGCACCAGCAGCAGCGGGTCGGC CTGGGCCCTGCGTCGCGCCGCATCAGCAGCAGCGGGTCGGC < 41bp 0.736191528214853 0.515009618036085 0.17588007 0.14812398 prediction 0.442363820357536 Functional Loss - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48674230 chr17:48674232 nonsynonymous SNV 0.974 3 23 hm5C_associated_SNPs_81087 0 0 0 0 1 CACNA1G chr17:48674284 5'GT 48674284 Upstream 53bp
chr12 109945425 109945425 1 + G A STAD 109945422 + 109945402 109945442 41 TGTGGGCATTTATCTGTGAGCTCGGGCCCCACGGAGGGTTA TGTGGGCATTTATCTGTGAGCTCAGGCCCCACGGAGGGTTA < 41bp 0.757175896995009 0.53600816054444 0.1460537 0.11627042 prediction 0.44233547290114 Functional Loss - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109945422 chr12:109945425 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_81092 0 0 1 0 1 UBE3B chr12:109945369 3'AG 109945369 Downstream 57bp
chr8 56864630 56864630 1 + G A SKCM 56864627 + 56864607 56864647 41 TGGGGGCTATTACATCTCTCCACGAATCACTTTTCCCTGTA TGGGGGCTATTACATCTCTCCACAAATCACTTTTCCCTGTA < 41bp 0.763167956646723 0.542004031433188 0.16651347 0.10511738 prediction 0.44232785042707 Functional Loss - LYN ENSG00000254087 CDS Human protein_coding chr8:56864627 chr8:56864630 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_81095 0 0 1 0 1 LYN chr8:56864674 5'GT 56864674 Upstream 45bp
chr8 99139844 99139844 1 + G A COAD 99139841 + 99139821 99139861 41 AGAGCCTCATCCTGGAACTTCACGACAGCGGCAAACCAGAG AGAGCCTCATCCTGGAACTTCACAACAGCGGCAAACCAGAG < 41bp 0.721162754961927 0.472687982435323 0.06384879 0.06636888 prediction 0.442325509923853 Functional Loss - POP1 ENSG00000104356 CDS Human protein_coding chr8:99139841 chr8:99139844 nonsynonymous SNV 0.628 0 24 hm5C_associated_SNPs_81096 0 0 0 0 1 POP1 chr8:99139823 3'AG 99139823 Downstream 22bp
chrX 135289267 135289267 1 + G A GBM 135289264 + 135289244 135289284 41 GCCAATGAGACCTTTGTGGCCAAGGACAACAAGATCCTGTG GCCAATGAGACCTTTGTGGCCAAAGACAACAAGATCCTGTG < 41bp 0.722618286502726 0.501464037825232 0.75541925 0.7342248 prediction 0.442308497354987 Functional Loss - FHL1 ENSG00000022267 CDS Human protein_coding chrX:135289264 chrX:135289267 synonymous SNV . 0 24 hm5C_associated_SNPs_81099 0 0 0 0 2 FHL1 chrX:135289175 3'AG 135289175 Downstream 93bp
chrX 135289267 135289267 1 + G A GBM 135289264 + 135289244 135289284 41 GCCAATGAGACCTTTGTGGCCAAGGACAACAAGATCCTGTG GCCAATGAGACCTTTGTGGCCAAAGACAACAAGATCCTGTG < 41bp 0.722618286502726 0.501464037825232 0.75541925 0.7342248 prediction 0.442308497354987 Functional Loss - FHL1 ENSG00000022267 CDS Human protein_coding chrX:135289264 chrX:135289267 synonymous SNV . 0 24 hm5C_associated_SNPs_81099 0 0 0 0 2 FHL1 chrX:135289349 5'GT 135289349 Upstream 83bp
chr4 119461477 119461477 1 + G A SKCM 119461474 + 119461454 119461494 41 CAACGGTCGATCTGGTGATCCAAGACCTCAAGCAGCAGAGC CAACGGTCGATCTGGTGATCCAAAACCTCAAGCAGCAGAGC < 41bp 0.758873939929212 0.537719886564744 0.5103612 0.21997511 prediction 0.442308106728935 Functional Loss - CEP170P1 ENSG00000154608 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr4:119461474 chr4:119461477 . . 0 24 hm5C_associated_SNPs_81100 0 0 0 0 1 CEP170P1 chr4:119461544 5'GT 119461544 Upstream 68bp
chr1 47279204 47279204 1 + C T LGG 47279201 + 47279181 47279221 41 GGTAAGTCCTTTGACATCTTCTGCGATGTGGGTCACATGGC GGTAAGTCCTTTGACATCTTCTGTGATGTGGGTCACATGGC < 41bp 0.736157189910663 0.515003355470676 0.23624152 0.27496186 prediction 0.442307668879974 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47279201 chr1:47279204 synonymous SNV . 0 24 hm5C_associated_SNPs_81101 0 0 0 0 2 CYP4B1 chr1:47279154 3'AG 47279154 Downstream 51bp
chr1 47279204 47279204 1 + C T LGG 47279201 + 47279181 47279221 41 GGTAAGTCCTTTGACATCTTCTGCGATGTGGGTCACATGGC GGTAAGTCCTTTGACATCTTCTGTGATGTGGGTCACATGGC < 41bp 0.736157189910663 0.515003355470676 0.23624152 0.27496186 prediction 0.442307668879974 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47279201 chr1:47279204 synonymous SNV . 0 24 hm5C_associated_SNPs_81101 0 0 0 0 2 CYP4B1 chr1:47279278 5'GT 47279278 Upstream 75bp
chr20 37378711 37378711 1 + G A CESC 37378708 + 37378688 37378728 41 TGTGTGCAACCCACTGTATTCACGGCAAATGATGTCTGAGC TGTGTGCAACCCACTGTATTCACAGCAAATGATGTCTGAGC < 41bp 0.771470642391256 0.550316993526764 0.30975285 0.11429182 prediction 0.442307297728984 Functional Loss - ACTR5 ENSG00000101442 CDS Human protein_coding chr20:37378708 chr20:37378711 nonsynonymous SNV 0.896 5 24 hm5C_associated_SNPs_81102 0 0 1 0 1 ACTR5 chr20:37378653 3'AG 37378653 Downstream 59bp
chr12 104376646 104376646 1 + G A UCEC 104376643 + 104376623 104376663 41 TATGGATGATCACACTCTACCAGGGAAGTATGGTATTGGAT TATGGATGATCACACTCTACCAGAGAAGTATGGTATTGGAT < 41bp 0.785537880900042 0.564386410941303 0.91570437 0.8855361 prediction 0.442302939917478 Functional Loss - TDG ENSG00000139372 CDS Human protein_coding chr12:104376643 chr12:104376646 nonsynonymous SNV 0.950 0 24 hm5C_associated_SNPs_81103 0 0 0 0 2 TDG chr12:104376577 3'AG 104376577 Downstream 70bp
chr12 104376646 104376646 1 + G A UCEC 104376643 + 104376623 104376663 41 TATGGATGATCACACTCTACCAGGGAAGTATGGTATTGGAT TATGGATGATCACACTCTACCAGAGAAGTATGGTATTGGAT < 41bp 0.785537880900042 0.564386410941303 0.91570437 0.8855361 prediction 0.442302939917478 Functional Loss - TDG ENSG00000139372 CDS Human protein_coding chr12:104376643 chr12:104376646 nonsynonymous SNV 0.950 0 24 hm5C_associated_SNPs_81103 0 0 0 0 2 TDG chr12:104376712 5'GT 104376712 Upstream 67bp
chr3 122404049 122404049 1 + G A SKCM 122404046 + 122404026 122404066 41 TTTCAGTTCGGCAGAAGGTTCTGGAGAGAAAAAATCATGAG TTTCAGTTCGGCAGAAGGTTCTGAAGAGAAAAAATCATGAG < 41bp 0.733255245531974 0.512113707050718 0.16144574 0.13183445 prediction 0.442283076962511 Functional Loss - PARP14 ENSG00000173193 CDS Human protein_coding chr3:122404046 chr3:122404049 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_81106 0 0 1 0 1 PARP14 chr3:122404032 3'AG 122404032 Downstream 18bp
chr14 68193808 68193808 1 + G A COAD 68193805 + 68193785 68193825 41 ACATTGGCAAGATTCCCTTCCACGACCTCCAGAGCGAGAAG ACATTGGCAAGATTCCCTTCCACAACCTCCAGAGCGAGAAG < 41bp 0.80185814785341 0.580718418973496 0.17723486 0.14567518 prediction 0.442279457759827 Functional Loss - RDH12 ENSG00000139988 CDS Human protein_coding chr14:68193805 chr14:68193808 nonsynonymous SNV 0.949 1 24 hm5C_associated_SNPs_81108 0 0 0 0 1 RDH12 chr14:68193907 5'GT 68193907 Upstream 100bp
chr7 142566058 142566058 1 + G T UCEC 142566055 + 142566035 142566075 41 AGGACCCCTGTCAGGCCATCCGAGAACTTGCCCGGGAAGTC AGGACCCCTGTCAGGCCATCCGATAACTTGCCCGGGAAGTC < 41bp 0.721137273229574 0.324558226338346 0.55019236 0.19892022 prediction 0.442274546459148 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142566055 chr7:142566058 stopgain 0.998 1 24 hm5C_associated_SNPs_81110 0 0 0 0 2 EPHB6 chr7:142565996 3'AG 142565996 Downstream 63bp
chr7 142566058 142566058 1 + G T UCEC 142566055 + 142566035 142566075 41 AGGACCCCTGTCAGGCCATCCGAGAACTTGCCCGGGAAGTC AGGACCCCTGTCAGGCCATCCGATAACTTGCCCGGGAAGTC < 41bp 0.721137273229574 0.324558226338346 0.55019236 0.19892022 prediction 0.442274546459148 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142566055 chr7:142566058 stopgain 0.998 1 24 hm5C_associated_SNPs_81110 0 0 0 0 2 EPHB6 chr7:142566115 5'GT 142566115 Upstream 58bp
chr3 139062952 139062952 1 + A T UCEC 139062948 + 139062928 139062968 41 GGAACGGGTCTGTTTCCGGGCTCGAATCCAGCCCTGGCACG GGAACGGGTCTGTTTCCGGGCTCGTATCCAGCCCTGGCACG < 41bp 0.879843628386547 0.658710727285415 0.23814729 0.19357818 prediction 0.442265802202264 Functional Loss - MRPS22 ENSG00000175110 CDS Human protein_coding chr3:139062948 chr3:139062952 synonymous SNV . 0 25 hm5C_associated_SNPs_81111 0 0 1 0 1 MRPS22 chr3:139063040 5'GT 139063040 Upstream 89bp
chr2 98262630 98262630 1 + G C CESC 98262629 + 98262609 98262649 41 CGGCCCCAGTGGCGCGGCCGCGATGCGCTCCATGGCATCTG CGGCCCCAGTGGCGCGGCCGCCATGCGCTCCATGGCATCTG < 41bp 0.721128663646844 0.418096447819915 0.57486653 0.636261 prediction 0.442257327293688 Functional Loss - COX5B ENSG00000135940 CDS Human protein_coding chr2:98262629 chr2:98262630 synonymous SNV . 0 22 hm5C_associated_SNPs_81113 0 0 1 0 1 COX5B chr2:98262652 5'GT 98262652 Upstream 23bp
chr6 74072844 74072844 1 + G A COAD 74072841 + 74072821 74072861 41 GGGGCGGAGAACGCATCCCGCACGTCCAGGGTATGTCCCAA GGGGCGGAGAACGCATCCCGCACATCCAGGGTATGTCCCAA < 41bp 0.790186799479427 0.569060951155604 0.026547402 0.009643167 prediction 0.442251696647645 Functional Loss - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74072841 chr6:74072844 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_81116 0 0 0 0 1 KHDC3L chr6:74072818 3'AG 74072818 Downstream 27bp
chr7 28547316 28547316 1 + C T UCEC 28547314 + 28547294 28547334 41 AGCTGGACTGCTCCCTGGAGCACGAGTTCAGGAAGGCTCAG AGCTGGACTGCTCCCTGGAGCATGAGTTCAGGAAGGCTCAG < 41bp 0.826803627877867 0.605678519061604 0.34368223 0.35769236 prediction 0.442250217632525 Functional Loss - CREB5 ENSG00000146592 CDS Human protein_coding chr7:28547314 chr7:28547316 synonymous SNV . 0 23 hm5C_associated_SNPs_81117 0 0 1 0 2 CREB5 chr7:28547234 3'AG 28547234 Downstream 83bp
chr7 28547316 28547316 1 + C T UCEC 28547314 + 28547294 28547334 41 AGCTGGACTGCTCCCTGGAGCACGAGTTCAGGAAGGCTCAG AGCTGGACTGCTCCCTGGAGCATGAGTTCAGGAAGGCTCAG < 41bp 0.826803627877867 0.605678519061604 0.34368223 0.35769236 prediction 0.442250217632525 Functional Loss - CREB5 ENSG00000146592 CDS Human protein_coding chr7:28547314 chr7:28547316 synonymous SNV . 0 23 hm5C_associated_SNPs_81117 0 0 1 0 2 CREB5 chr7:28547355 5'GT 28547355 Upstream 40bp
chr11 66241285 66241285 1 + G A LGG 66241282 + 66241262 66241302 41 AATGGAGTCCTGGTGATGCACCCGGCAGGCGGCTTCTCCGA AATGGAGTCCTGGTGATGCACCCAGCAGGCGGCTTCTCCGA < 41bp 0.801350797053321 0.580227478351238 0.19916597 0.083351195 prediction 0.442246637404166 Functional Loss - PELI3 ENSG00000174516 CDS Human protein_coding chr11:66241282 chr11:66241285 synonymous SNV . 0 24 hm5C_associated_SNPs_81119 0 0 1 0 1 PELI3 chr11:66241208 3'AG 66241208 Downstream 78bp
chr8 39843034 39843034 1 + G A SKCM 39843031 + 39843011 39843051 41 ACTGAAATTGGGCTAGATTCCTGGAAATTGGGTAAGTTCTC ACTGAAATTGGGCTAGATTCCTGAAAATTGGGTAAGTTCTC < 41bp 0.723415911903963 0.502294165286405 0.28881449 0.16848564 prediction 0.442243493235116 Functional Loss - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39843031 chr8:39843034 nonsynonymous SNV 0.961 0 24 hm5C_associated_SNPs_81121 0 0 0 2 2 IDO2 chr8:39843027 3'AG 39843027 Downstream 8bp
chr8 39843034 39843034 1 + G A SKCM 39843031 + 39843011 39843051 41 ACTGAAATTGGGCTAGATTCCTGGAAATTGGGTAAGTTCTC ACTGAAATTGGGCTAGATTCCTGAAAATTGGGTAAGTTCTC < 41bp 0.723415911903963 0.502294165286405 0.28881449 0.16848564 prediction 0.442243493235116 Functional Loss - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39843031 chr8:39843034 nonsynonymous SNV 0.961 0 24 hm5C_associated_SNPs_81121 0 0 0 2 2 IDO2 chr8:39843041 5'GT 39843041 Upstream 8bp
chr21 48078737 48078737 1 + T C UCEC 48078736 + 48078716 48078756 41 GGTCATTTGGCCCACCATGGCTGCGTTGCACCTTGTGCCCT GGTCATTTGGCCCACCATGGCCGCGTTGCACCTTGTGCCCT < 41bp 0.744169727648966 0.523051032428773 0.102478236 0.16673228 prediction 0.442237390440386 Functional Loss - PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48078736 chr21:48078737 synonymous SNV 0.091 0 22 hm5C_associated_SNPs_81124 0 0 1 0 2 PRMT2 chr21:48078657 3'AG 48078657 Downstream 81bp
chr21 48078737 48078737 1 + T C UCEC 48078736 + 48078716 48078756 41 GGTCATTTGGCCCACCATGGCTGCGTTGCACCTTGTGCCCT GGTCATTTGGCCCACCATGGCCGCGTTGCACCTTGTGCCCT < 41bp 0.744169727648966 0.523051032428773 0.102478236 0.16673228 prediction 0.442237390440386 Functional Loss - PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48078736 chr21:48078737 synonymous SNV 0.091 0 22 hm5C_associated_SNPs_81124 0 0 1 0 2 PRMT2 chr21:48078832 5'GT 48078832 Upstream 96bp
chr1 160141484 160141484 1 + G A STAD 160141481 + 160141461 160141501 41 TGTTTTGTGGGCCTCATATCCATGATTGACCCTCCCCGAGC TGTTTTGTGGGCCTCATATCCATAATTGACCCTCCCCGAGC < 41bp 0.802708336186721 0.581595160374851 0.32627147 0.18840763 prediction 0.44222635162374 Functional Loss - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160141481 chr1:160141484 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_81125 0 0 0 0 1 ATP1A4 chr1:160141547 5'GT 160141547 Upstream 64bp
chr3 44844408 44844408 1 + G T UCEC 44844405 + 44844385 44844425 41 TAGAGCCTGTGAAAAGAGCTCAAGAAATGGATGCCCAGACC TAGAGCCTGTGAAAAGAGCTCAATAAATGGATGCCCAGACC < 41bp 0.721111947455212 0.336059365355851 0.27350822 0.056779206 prediction 0.442223894910424 Functional Loss - KIF15 ENSG00000163808 CDS Human protein_coding chr3:44844405 chr3:44844408 stopgain 1.000 1 24 hm5C_associated_SNPs_81126 0 0 1 0 1 KIF15 chr3:44844483 5'GT 44844483 Upstream 76bp
chr1 15802979 15802979 1 + C T UCEC 15802977 + 15802957 15802997 41 AGTTGTGGGGTCTCCACTTACGCGCCTGATATGTCTAGGAT AGTTGTGGGGTCTCCACTTACGTGCCTGATATGTCTAGGAT < 41bp 0.820235791310347 0.599133510890098 0.668586 0.81985 prediction 0.442204560840498 Functional Loss - CELA2B ENSG00000215704 CDS Human protein_coding chr1:15802977 chr1:15802979 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_81128 0 0 0 0 2 CELA2B chr1:15802952 3'AG 15802952 Downstream 28bp
chr1 15802979 15802979 1 + C T UCEC 15802977 + 15802957 15802997 41 AGTTGTGGGGTCTCCACTTACGCGCCTGATATGTCTAGGAT AGTTGTGGGGTCTCCACTTACGTGCCTGATATGTCTAGGAT < 41bp 0.820235791310347 0.599133510890098 0.668586 0.81985 prediction 0.442204560840498 Functional Loss - CELA2B ENSG00000215704 CDS Human protein_coding chr1:15802977 chr1:15802979 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_81128 0 0 0 0 2 CELA2B chr1:15803040 5'GT 15803040 Upstream 62bp
chr8 27995360 27995360 1 + G A CESC 27995357 + 27995337 27995377 41 TGACCTGGTTGAATTGGTGGCTCGGATCCTAGCCCTCGTGC TGACCTGGTTGAATTGGTGGCTCAGATCCTAGCCCTCGTGC < 41bp 0.721101413889011 0.476663126591195 0.67600226 0.38053933 prediction 0.442202827778022 Functional Loss - ELP3 ENSG00000134014 CDS Human protein_coding chr8:27995357 chr8:27995360 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_81129 0 0 1 0 1 ELP3 chr8:27995408 5'GT 27995408 Upstream 49bp
chr17 79207258 79207258 1 - C A LUSC 79207260 - 79207240 79207280 41 CACAGCACCCTCCAGGGTTTCGGCTACAGCAAGGAACACGG CACAGCACCCTCCAGGGTTTCGTCTACAGCAAGGAACACGG < 41bp 0.721100990327557 0.35724122754661 0.29166186 0.13208371 prediction 0.442201980655113 Functional Loss - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79207260 chr17:79207258 nonsynonymous SNV 0.579 4 23 hm5C_associated_SNPs_81130 0 0 0 0 2 TEPSIN chr17:79207232 5'GT 79207232 Upstream 27bp
chr17 79207258 79207258 1 - C A LUSC 79207260 - 79207240 79207280 41 CACAGCACCCTCCAGGGTTTCGGCTACAGCAAGGAACACGG CACAGCACCCTCCAGGGTTTCGTCTACAGCAAGGAACACGG < 41bp 0.721100990327557 0.35724122754661 0.29166186 0.13208371 prediction 0.442201980655113 Functional Loss - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79207260 chr17:79207258 nonsynonymous SNV 0.579 4 23 hm5C_associated_SNPs_81130 0 0 0 0 2 TEPSIN chr17:79207303 3'AG 79207303 Downstream 46bp
chr8 22473023 22473023 1 + A T STAD 22473019 + 22472999 22473039 41 GTGGTGTACCTGCCGGATGTCTGGACCATCATGCCTACTTT GTGGTGTACCTGCCGGATGTCTGGTCCATCATGCCTACTTT < 41bp 0.895094487114362 0.673994597246828 0.20100066 0.45243773 prediction 0.442199779735068 Functional Loss - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22473019 chr8:22473023 nonsynonymous SNV 0.991 0 25 hm5C_associated_SNPs_81131 0 0 1 0 2 CCAR2 chr8:22472938 3'AG 22472938 Downstream 86bp
chr8 22473023 22473023 1 + A T STAD 22473019 + 22472999 22473039 41 GTGGTGTACCTGCCGGATGTCTGGACCATCATGCCTACTTT GTGGTGTACCTGCCGGATGTCTGGTCCATCATGCCTACTTT < 41bp 0.895094487114362 0.673994597246828 0.20100066 0.45243773 prediction 0.442199779735068 Functional Loss - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22473019 chr8:22473023 nonsynonymous SNV 0.991 0 25 hm5C_associated_SNPs_81131 0 0 1 0 2 CCAR2 chr8:22473109 5'GT 22473109 Upstream 87bp
chr17 48539808 48539808 1 + G A BLCA 48539805 + 48539785 48539825 41 CCAGATCTGACCACAGTCATCTCGGTGGATGCCCCTTTGCC CCAGATCTGACCACAGTCATCTCAGTGGATGCCCCTTTGCC < 41bp 0.806822528376877 0.5857264237744 0.83071494 0.55182415 prediction 0.442192209204954 Functional Loss - ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48539805 chr17:48539808 synonymous SNV . 0 24 hm5C_associated_SNPs_81135 0 0 1 0 1 ACSF2 chr17:48539781 3'AG 48539781 Downstream 28bp
chr9 138415731 138415731 1 + G C rs117638349 138415727 + 138415707 138415747 41 TGCTGCTGTCTTTCTGCAGACGGGGGCAAGCACGTGGCATA TGCTGCTGTCTTTCTGCAGACGGGCGCAAGCACGTGGCATA < 41bp 0.862947253156361 0.641851804380049 0.9321943 0.8677828 prediction 0.442190897552624 Functional Loss - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415727 chr9:138415731 nonsynonymous SNV 0.012 3 25 hm5C_associated_SNPs_81136 0 0 0 0 2 LCN1 chr9:138415726 3'AG 138415726 Downstream 6bp
chr9 138415731 138415731 1 + G C rs117638349 138415727 + 138415707 138415747 41 TGCTGCTGTCTTTCTGCAGACGGGGGCAAGCACGTGGCATA TGCTGCTGTCTTTCTGCAGACGGGCGCAAGCACGTGGCATA < 41bp 0.862947253156361 0.641851804380049 0.9321943 0.8677828 prediction 0.442190897552624 Functional Loss - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415727 chr9:138415731 nonsynonymous SNV 0.012 3 25 hm5C_associated_SNPs_81136 0 0 0 0 2 LCN1 chr9:138415823 5'GT 138415823 Upstream 93bp
chr22 24325182 24325182 1 + G A rs139143959 24325179 + 24325159 24325199 41 TCCTGGGGGACAGGCCCTTCCTCGCTGGCCAGCAGGTGACA TCCTGGGGGACAGGCCCTTCCTCACTGGCCAGCAGGTGACA < 41bp 0.721095420194756 0.467771246920903 0.5549394 0.17735669 prediction 0.442190840389511 Functional Loss - GSTT2;GSTT2B ENSG00000099984 CDS Human polymorphic_pseudogene chr22:24325179 chr22:24325182 nonsynonymous SNV 0.291 0 24 hm5C_associated_SNPs_81137 0 0 0 0 2 GSTT2;GSTT2B chr22:24325193 5'GT 24325193 Upstream 12bp
chr22 24325182 24325182 1 + G A rs139143959 24325179 + 24325159 24325199 41 TCCTGGGGGACAGGCCCTTCCTCGCTGGCCAGCAGGTGACA TCCTGGGGGACAGGCCCTTCCTCACTGGCCAGCAGGTGACA < 41bp 0.721095420194756 0.467771246920903 0.5549394 0.17735669 prediction 0.442190840389511 Functional Loss - GSTT2;GSTT2B ENSG00000099984 CDS Human polymorphic_pseudogene chr22:24325179 chr22:24325182 nonsynonymous SNV 0.291 0 24 hm5C_associated_SNPs_81137 0 0 0 0 2 GSTT2;GSTT2B chr22:24325235 5'GT 24325235 Upstream 54bp
chr11 118403846 118403846 1 + C T SKCM 118403844 + 118403824 118403864 41 ACCACACGGTGCAGCTGCAGCTCCGCAGCCTGGCACACAAC ACCACACGGTGCAGCTGCAGCTTCGCAGCCTGGCACACAAC < 41bp 0.721093319393847 0.443726235976788 0.10332531 0.03325528 prediction 0.442186638787693 Functional Loss - TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118403844 chr11:118403846 synonymous SNV . 0 23 hm5C_associated_SNPs_81138 0 0 0 0 1 TMEM25 chr11:118403922 5'GT 118403922 Upstream 77bp
chr17 78968447 78968447 1 + G T LUAD 78968444 + 78968424 78968464 41 GGATCGCCCAGCAGCTGGAGCGCGAGCGCGCCCTGGCCCGG GGATCGCCCAGCAGCTGGAGCGCTAGCGCGCCCTGGCCCGG < 41bp 0.931355201472104 0.710262174728872 0.6396574 0.4297769 prediction 0.442186053486464 Functional Loss - CHMP6 ENSG00000176108 CDS Human protein_coding chr17:78968444 chr17:78968447 stopgain 0.738 1 24 hm5C_associated_SNPs_81139 0 0 1 0 2 CHMP6 chr17:78968381 3'AG 78968381 Downstream 67bp
chr17 78968447 78968447 1 + G T LUAD 78968444 + 78968424 78968464 41 GGATCGCCCAGCAGCTGGAGCGCGAGCGCGCCCTGGCCCGG GGATCGCCCAGCAGCTGGAGCGCTAGCGCGCCCTGGCCCGG < 41bp 0.931355201472104 0.710262174728872 0.6396574 0.4297769 prediction 0.442186053486464 Functional Loss - CHMP6 ENSG00000176108 CDS Human protein_coding chr17:78968444 chr17:78968447 stopgain 0.738 1 24 hm5C_associated_SNPs_81139 0 0 1 0 2 CHMP6 chr17:78968490 5'GT 78968490 Upstream 44bp
chr20 31600616 31600616 1 + A T LUSC 31600612 + 31600592 31600632 41 TGATTACTACCCTGCAGGATCCGGATTCTGAATGTCCATGT TGATTACTACCCTGCAGGATCCGGTTTCTGAATGTCCATGT < 41bp 0.721091658995494 0.408841896072648 0.34469903 0.15318662 prediction 0.442183317990987 Functional Loss - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31600612 chr20:31600616 nonsynonymous SNV 0.916 1 25 hm5C_associated_SNPs_81140 0 0 1 0 2 BPIFB2 chr20:31600609 3'AG 31600609 Downstream 8bp
chr20 31600616 31600616 1 + A T LUSC 31600612 + 31600592 31600632 41 TGATTACTACCCTGCAGGATCCGGATTCTGAATGTCCATGT TGATTACTACCCTGCAGGATCCGGTTTCTGAATGTCCATGT < 41bp 0.721091658995494 0.408841896072648 0.34469903 0.15318662 prediction 0.442183317990987 Functional Loss - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31600612 chr20:31600616 nonsynonymous SNV 0.916 1 25 hm5C_associated_SNPs_81140 0 0 1 0 2 BPIFB2 chr20:31600713 5'GT 31600713 Upstream 98bp
chr5 148747010 148747010 1 + C T GBM 148747008 + 148746988 148747028 41 TGTTCCGGTTTGCTGAAGCTCACCAAGGCCAATGTGATCCA TGTTCCGGTTTGCTGAAGCTCATCAAGGCCAATGTGATCCA < 41bp 0.873310066075427 0.652218920494454 0.22907919 0.19255304 prediction 0.442182291161945 Functional Loss - PCYOX1L ENSG00000145882 CDS Human protein_coding chr5:148747008 chr5:148747010 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_81141 0 0 0 0 2 PCYOX1L chr5:148746923 3'AG 148746923 Downstream 88bp
chr5 148747010 148747010 1 + C T GBM 148747008 + 148746988 148747028 41 TGTTCCGGTTTGCTGAAGCTCACCAAGGCCAATGTGATCCA TGTTCCGGTTTGCTGAAGCTCATCAAGGCCAATGTGATCCA < 41bp 0.873310066075427 0.652218920494454 0.22907919 0.19255304 prediction 0.442182291161945 Functional Loss - PCYOX1L ENSG00000145882 CDS Human protein_coding chr5:148747008 chr5:148747010 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_81141 0 0 0 0 2 PCYOX1L chr5:148747063 5'GT 148747063 Upstream 54bp
chr14 94712791 94712791 1 + A C COAD 94712787 + 94712767 94712807 41 GAACTCATGAGAAGCTACTTCAGAAATATGCCTGCCTGCCA GAACTCATGAGAAGCTACTTCAGACATATGCCTGCCTGCCA < 41bp 0.721091130800835 0.302946807963253 0.35953984 0.26352775 prediction 0.442182261601669 Functional Loss - PPP4R4 ENSG00000119698 CDS Human protein_coding chr14:94712787 chr14:94712791 nonsynonymous SNV 0.982 1 25 hm5C_associated_SNPs_81142 0 0 1 0 2 PPP4R4 chr14:94712694 3'AG 94712694 Downstream 98bp
chr14 94712791 94712791 1 + A C COAD 94712787 + 94712767 94712807 41 GAACTCATGAGAAGCTACTTCAGAAATATGCCTGCCTGCCA GAACTCATGAGAAGCTACTTCAGACATATGCCTGCCTGCCA < 41bp 0.721091130800835 0.302946807963253 0.35953984 0.26352775 prediction 0.442182261601669 Functional Loss - PPP4R4 ENSG00000119698 CDS Human protein_coding chr14:94712787 chr14:94712791 nonsynonymous SNV 0.982 1 25 hm5C_associated_SNPs_81142 0 0 1 0 2 PPP4R4 chr14:94712876 5'GT 94712876 Upstream 86bp
chr1 117297263 117297263 1 + C T SARC 117297260 + 117297240 117297280 41 TTGCTTTTTATAGGTGCAGTCTCCAAAGAGATTACGAATGC TTGCTTTTTATAGGTGCAGTCTCTAAAGAGATTACGAATGC < 41bp 0.721687846201797 0.500600024647718 0.9703479 0.944962 prediction 0.442175643108157 Functional Loss - CD2 ENSG00000116824 CDS Human protein_coding chr1:117297260 chr1:117297263 synonymous SNV . 0 24 hm5C_associated_SNPs_81144 0 0 0 0 1 CD2 chr1:117297253 3'AG 117297253 Downstream 11bp
chr2 10911983 10911983 1 + G A SKCM 10911980 + 10911960 10912000 41 TTTAGGGGGAACCTCTTCACCCGGACACTGAGTGATATTGT TTTAGGGGGAACCTCTTCACCCGAACACTGAGTGATATTGT < 41bp 0.721085431817389 0.482042074956805 0.058294535 0.015794665 prediction 0.442170863634778 Functional Loss - ATP6V1C2 ENSG00000143882 CDS Human protein_coding chr2:10911980 chr2:10911983 synonymous SNV . 0 24 hm5C_associated_SNPs_81146 0 0 0 0 2 ATP6V1C2 chr2:10911965 3'AG 10911965 Downstream 19bp
chr2 10911983 10911983 1 + G A SKCM 10911980 + 10911960 10912000 41 TTTAGGGGGAACCTCTTCACCCGGACACTGAGTGATATTGT TTTAGGGGGAACCTCTTCACCCGAACACTGAGTGATATTGT < 41bp 0.721085431817389 0.482042074956805 0.058294535 0.015794665 prediction 0.442170863634778 Functional Loss - ATP6V1C2 ENSG00000143882 CDS Human protein_coding chr2:10911980 chr2:10911983 synonymous SNV . 0 24 hm5C_associated_SNPs_81146 0 0 0 0 2 ATP6V1C2 chr2:10912063 5'GT 10912063 Upstream 81bp
chr12 122684859 122684859 1 + G A rs77299939 122684856 + 122684836 122684876 41 TTCCTGCTGGCGGGGACCACCGTGACCATCGTGGAGGAGAA TTCCTGCTGGCGGGGACCACCGTAACCATCGTGGAGGAGAA < 41bp 0.789986814846504 0.568903209248886 0.6993636 0.40628785 prediction 0.442167211195237 Functional Loss - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122684856 chr12:122684859 synonymous SNV . 0 24 hm5C_associated_SNPs_81147 0 0 0 0 1 LRRC43 chr12:122684877 5'GT 122684877 Upstream 19bp
chrX 103294917 103294917 1 + T C HNSC 103294916 + 103294896 103294936 41 AGATGGCCGTGCGACTGCTGCTGCCGGGGAAGATGGGCAAG AGATGGCCGTGCGACTGCTGCCGCCGGGGAAGATGGGCAAG < 41bp 0.758612941264632 0.537532742809381 0.74631363 0.7047218 prediction 0.442160396910502 Functional Loss - H2BFM ENSG00000101812 CDS Human protein_coding chrX:103294916 chrX:103294917 nonsynonymous SNV 0.038 3 22 hm5C_associated_SNPs_81149 0 0 0 0 1 H2BFM chrX:103294971 5'GT 103294971 Upstream 55bp
chr7 102040030 102040030 1 + G A STAD 102040027 + 102040007 102040047 41 GGGCCGGCAGTGGAGAGTTCCACGTGTACAGACATCTGCGC GGGCCGGCAGTGGAGAGTTCCACATGTACAGACATCTGCGC < 41bp 0.782596032757429 0.56151674063365 0.5362221 0.39184433 prediction 0.442158584247559 Functional Loss - PRKRIP1 ENSG00000128563 CDS Human protein_coding chr7:102040027 chr7:102040030 nonsynonymous SNV 0.984 3 24 hm5C_associated_SNPs_81150 0 0 1 0 2 PRKRIP1 chr7:102039995 3'AG 102039995 Downstream 36bp
chr7 102040030 102040030 1 + G A STAD 102040027 + 102040007 102040047 41 GGGCCGGCAGTGGAGAGTTCCACGTGTACAGACATCTGCGC GGGCCGGCAGTGGAGAGTTCCACATGTACAGACATCTGCGC < 41bp 0.782596032757429 0.56151674063365 0.5362221 0.39184433 prediction 0.442158584247559 Functional Loss - PRKRIP1 ENSG00000128563 CDS Human protein_coding chr7:102040027 chr7:102040030 nonsynonymous SNV 0.984 3 24 hm5C_associated_SNPs_81150 0 0 1 0 2 PRKRIP1 chr7:102040095 5'GT 102040095 Upstream 66bp
chr19 830927 830927 1 + G A BLCA 830924 + 830904 830944 41 GCACCGGTGTGCTCACCCGCCGCGGTGGCATCTGCAATGTG GCACCGGTGTGCTCACCCGCCGCAGTGGCATCTGCAATGTG < 41bp 0.795039853587301 0.573965027812835 0.30466676 0.1727027 prediction 0.442149651548933 Functional Loss - AZU1 ENSG00000172232 CDS Human protein_coding chr19:830924 chr19:830927 nonsynonymous SNV 0.003 3 24 hm5C_associated_SNPs_81151 0 0 0 0 1 AZU1 chr19:830941 5'GT 830941 Upstream 15bp
chr3 179069792 179069792 1 + C T GBM 179069790 + 179069770 179069810 41 CATCATTGGTGAGGTGCTATCTCGGAGACACATGAAGGTGG CATCATTGGTGAGGTGCTATCTTGGAGACACATGAAGGTGG < 41bp 0.84859393089865 0.627522652744438 0.7449462 0.7808332 prediction 0.442142556308424 Functional Loss - MFN1 ENSG00000171109 CDS Human protein_coding chr3:179069790 chr3:179069792 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_81153 0 0 1 1 1 MFN1 chr3:179069823 5'GT 179069823 Upstream 32bp
chr5 135396580 135396580 1 + A C SKCM 135396579 + 135396559 135396599 41 GCCGAGCCTGACATCATGGCCACAAATGGCGTGGTCCATGT GCCGAGCCTGACATCATGGCCCCAAATGGCGTGGTCCATGT < 41bp 0.721070072135576 0.458997918408449 0.03562057 0.03406194 prediction 0.442140144271153 Functional Loss - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135396579 chr5:135396580 nonsynonymous SNV 0.917 4 22 hm5C_associated_SNPs_81155 0 0 1 0 2 TGFBI chr5:135396523 3'AG 135396523 Downstream 58bp
chr5 135396580 135396580 1 + A C SKCM 135396579 + 135396559 135396599 41 GCCGAGCCTGACATCATGGCCACAAATGGCGTGGTCCATGT GCCGAGCCTGACATCATGGCCCCAAATGGCGTGGTCCATGT < 41bp 0.721070072135576 0.458997918408449 0.03562057 0.03406194 prediction 0.442140144271153 Functional Loss - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135396579 chr5:135396580 nonsynonymous SNV 0.917 4 22 hm5C_associated_SNPs_81155 0 0 1 0 2 TGFBI chr5:135396625 5'GT 135396625 Upstream 46bp
chr19 40996072 40996072 1 + G A UCEC 40996069 + 40996049 40996089 41 TGAAGGAGCAGCGCGTGCACCTGGAGAACGTGGGTTCGCAT TGAAGGAGCAGCGCGTGCACCTGAAGAACGTGGGTTCGCAT < 41bp 0.751548689025631 0.53048870471384 0.5747345 0.24413794 prediction 0.442119968623583 Functional Loss - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:40996069 chr19:40996072 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_81157 0 0 0 0 2 SPTBN4 chr19:40995982 3'AG 40995982 Downstream 91bp
chr19 40996072 40996072 1 + G A UCEC 40996069 + 40996049 40996089 41 TGAAGGAGCAGCGCGTGCACCTGGAGAACGTGGGTTCGCAT TGAAGGAGCAGCGCGTGCACCTGAAGAACGTGGGTTCGCAT < 41bp 0.751548689025631 0.53048870471384 0.5747345 0.24413794 prediction 0.442119968623583 Functional Loss - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:40996069 chr19:40996072 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_81157 0 0 0 0 2 SPTBN4 chr19:40996155 5'GT 40996155 Upstream 84bp
chr17 7290737 7290737 1 + C T COAD 7290735 + 7290715 7290755 41 TCTTTGGGATGCGCCCCCAGCACGGGGCCAGAGGAGGAACA TCTTTGGGATGCGCCCCCAGCATGGGGCCAGAGGAGGAACA < 41bp 0.815282059896998 0.594222148217236 0.8090217 0.78990424 prediction 0.442119823359524 Functional Loss - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7290735 chr17:7290737 nonsynonymous SNV 0.072 0 23 hm5C_associated_SNPs_81158 0 0 0 0 2 TNK1 chr17:7290697 3'AG 7290697 Downstream 41bp
chr17 7290737 7290737 1 + C T COAD 7290735 + 7290715 7290755 41 TCTTTGGGATGCGCCCCCAGCACGGGGCCAGAGGAGGAACA TCTTTGGGATGCGCCCCCAGCATGGGGCCAGAGGAGGAACA < 41bp 0.815282059896998 0.594222148217236 0.8090217 0.78990424 prediction 0.442119823359524 Functional Loss - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7290735 chr17:7290737 nonsynonymous SNV 0.072 0 23 hm5C_associated_SNPs_81158 0 0 0 0 2 TNK1 chr17:7290776 5'GT 7290776 Upstream 40bp
chr6 348127 348127 1 + G A HNSC 348124 + 348104 348144 41 CTGGCCGGGGTCTCCAGGAGCGTGACACTGGTGATCGCATA CTGGCCGGGGTCTCCAGGAGCGTAACACTGGTGATCGCATA < 41bp 0.721056829270776 0.480243416820732 0.81865 0.85447127 prediction 0.442113658541551 Functional Loss - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348124 chr6:348127 synonymous SNV . 0 24 hm5C_associated_SNPs_81161 0 0 1 0 1 DUSP22 chr6:348103 3'AG 348103 Downstream 25bp
chr12 54675243 54675243 1 + T C UCEC 54675242 + 54675222 54675262 41 TTGAAACAACTGATGAGAGCCTGAGGAGCCATTTTGAGCAA TTGAAACAACTGATGAGAGCCCGAGGAGCCATTTTGAGCAA < 41bp 0.790476536932127 0.569423515932377 0.3142473 0.23660943 prediction 0.442106041999499 Functional Loss - HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675242 chr12:54675243 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_81163 0 0 0 0 2 HNRNPA1 chr12:54675170 3'AG 54675170 Downstream 74bp
chr12 54675243 54675243 1 + T C UCEC 54675242 + 54675222 54675262 41 TTGAAACAACTGATGAGAGCCTGAGGAGCCATTTTGAGCAA TTGAAACAACTGATGAGAGCCCGAGGAGCCATTTTGAGCAA < 41bp 0.790476536932127 0.569423515932377 0.3142473 0.23660943 prediction 0.442106041999499 Functional Loss - HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675242 chr12:54675243 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_81163 0 0 0 0 2 HNRNPA1 chr12:54675286 5'GT 54675286 Upstream 44bp
chr20 33588661 33588661 1 + G A SKCM 33588658 + 33588638 33588678 41 AGGAGGCTGCACAGGAGAGGCGGGAGGCTGAGGAGAAGGCC AGGAGGCTGCACAGGAGAGGCGGAAGGCTGAGGAGAAGGCC < 41bp 0.756227117264064 0.535178637058114 0.88620496 0.8223052 prediction 0.4420969604119 Functional Loss - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33588658 chr20:33588661 nonsynonymous SNV 0.953 2 24 hm5C_associated_SNPs_81164 0 0 0 0 2 MYH7B chr20:33588571 3'AG 33588571 Downstream 91bp
chr20 33588661 33588661 1 + G A SKCM 33588658 + 33588638 33588678 41 AGGAGGCTGCACAGGAGAGGCGGGAGGCTGAGGAGAAGGCC AGGAGGCTGCACAGGAGAGGCGGAAGGCTGAGGAGAAGGCC < 41bp 0.756227117264064 0.535178637058114 0.88620496 0.8223052 prediction 0.4420969604119 Functional Loss - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33588658 chr20:33588661 nonsynonymous SNV 0.953 2 24 hm5C_associated_SNPs_81164 0 0 0 0 2 MYH7B chr20:33588696 5'GT 33588696 Upstream 36bp
chr2 27373191 27373191 1 + G T LUAD 27373188 + 27373168 27373208 41 CACGAGTTGCCTGGCCCTGCCTGGCCGCCCTTCCTGCGTGG CACGAGTTGCCTGGCCCTGCCTGTCCGCCCTTCCTGCGTGG < 41bp 0.721042328451206 0.314408397608829 0.08012116 0.00520733 prediction 0.442084656902411 Functional Loss - TCF23 ENSG00000163792 CDS Human protein_coding chr2:27373188 chr2:27373191 nonsynonymous SNV 0.991 3 24 hm5C_associated_SNPs_81167 0 0 0 0 1 TCF23 chr2:27373233 5'GT 27373233 Upstream 43bp
chr7 92020649 92020649 1 + C T SKCM 92020646 + 92020626 92020666 41 TCCTGCAGACTCACCAGAAGCTCCAAGGCGCAGGTAAAAAG TCCTGCAGACTCACCAGAAGCTCTAAGGCGCAGGTAAAAAG < 41bp 0.762126489119022 0.541088396301905 0.92806685 0.85575503 prediction 0.442076185634234 Functional Loss - ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:92020646 chr7:92020649 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_81169 0 0 1 0 1 ANKIB1 chr7:92020658 5'GT 92020658 Upstream 10bp
chr3 197505281 197505281 1 + G T UCEC 197505278 + 197505258 197505298 41 AAGCGGGAGCAAAGTGACGTCAAGAAAGTTCCTAAAGGTGT AAGCGGGAGCAAAGTGACGTCAATAAAGTTCCTAAAGGTGT < 41bp 0.721033522668603 0.345732158610896 0.095718235 0.05982709 prediction 0.442067045337206 Functional Loss - FYTTD1 ENSG00000122068 CDS Human protein_coding chr3:197505278 chr3:197505281 nonsynonymous SNV 0.888 4 24 hm5C_associated_SNPs_81171 0 0 1 0 2 FYTTD1 chr3:197505209 3'AG 197505209 Downstream 73bp
chr3 197505281 197505281 1 + G T UCEC 197505278 + 197505258 197505298 41 AAGCGGGAGCAAAGTGACGTCAAGAAAGTTCCTAAAGGTGT AAGCGGGAGCAAAGTGACGTCAATAAAGTTCCTAAAGGTGT < 41bp 0.721033522668603 0.345732158610896 0.095718235 0.05982709 prediction 0.442067045337206 Functional Loss - FYTTD1 ENSG00000122068 CDS Human protein_coding chr3:197505278 chr3:197505281 nonsynonymous SNV 0.888 4 24 hm5C_associated_SNPs_81171 0 0 1 0 2 FYTTD1 chr3:197505335 5'GT 197505335 Upstream 55bp
chr10 70992661 70992661 1 + G T COAD 70992659 + 70992639 70992679 41 AATGAAATCATCCGCGGGAACGGCACAGAGGTACCTGGCAG AATGAAATCATCCGCGGGAACGTCACAGAGGTACCTGGCAG < 41bp 0.908140761254069 0.687111440991066 0.23412296 0.12763527 prediction 0.442058640526006 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:70992659 chr10:70992661 nonsynonymous SNV 0.264 4 23 hm5C_associated_SNPs_81172 0 0 0 0 1 HKDC1 chr10:70992668 5'GT 70992668 Upstream 8bp
chr16 58538110 58538110 1 + C T BLCA 58538107 + 58538087 58538127 41 TTCGAGGACATGCAGGAGATCACCAAGCACTTTGTGGTGTG TTCGAGGACATGCAGGAGATCACTAAGCACTTTGTGGTGTG < 41bp 0.75992983507548 0.538901823306446 0.40022248 0.18739286 prediction 0.442056023538067 Functional Loss - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58538107 chr16:58538110 synonymous SNV . 0 24 hm5C_associated_SNPs_81174 0 0 1 0 2 NDRG4 chr16:58538058 3'AG 58538058 Downstream 53bp
chr16 58538110 58538110 1 + C T BLCA 58538107 + 58538087 58538127 41 TTCGAGGACATGCAGGAGATCACCAAGCACTTTGTGGTGTG TTCGAGGACATGCAGGAGATCACTAAGCACTTTGTGGTGTG < 41bp 0.75992983507548 0.538901823306446 0.40022248 0.18739286 prediction 0.442056023538067 Functional Loss - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58538107 chr16:58538110 synonymous SNV . 0 24 hm5C_associated_SNPs_81174 0 0 1 0 2 NDRG4 chr16:58538178 5'GT 58538178 Upstream 69bp
chr10 71000446 71000446 1 + C T rs149856737 71000443 + 71000423 71000463 41 ATCCTGGCCCTGGTCAATGACACCGTGGGGACCATGATGAC ATCCTGGCCCTGGTCAATGACACTGTGGGGACCATGATGAC < 41bp 0.731222731332903 0.510197595275198 0.17252168 0.18320656 prediction 0.442050272115411 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71000443 chr10:71000446 synonymous SNV . 0 24 hm5C_associated_SNPs_81175 0 0 0 0 2 HKDC1 chr10:71000408 3'AG 71000408 Downstream 39bp
chr10 71000446 71000446 1 + C T rs149856737 71000443 + 71000423 71000463 41 ATCCTGGCCCTGGTCAATGACACCGTGGGGACCATGATGAC ATCCTGGCCCTGGTCAATGACACTGTGGGGACCATGATGAC < 41bp 0.731222731332903 0.510197595275198 0.17252168 0.18320656 prediction 0.442050272115411 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71000443 chr10:71000446 synonymous SNV . 0 24 hm5C_associated_SNPs_81175 0 0 0 0 2 HKDC1 chr10:71000507 5'GT 71000507 Upstream 62bp
chr11 65161866 65161866 1 + A C STAD 65161865 + 65161845 65161885 41 GCGTGCAGCTTGGGCCCTACCAGCCCGGCCGGCCGGCAGCC GCGTGCAGCTTGGGCCCTACCCGCCCGGCCGGCCGGCAGCC < 41bp 0.814479006007164 0.593457561302036 0.7860866 0.23814231 prediction 0.442042889410257 Functional Loss - FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65161865 chr11:65161866 nonsynonymous SNV 0.700 0 22 hm5C_associated_SNPs_81177 0 0 1 0 1 FRMD8 chr11:65161896 5'GT 65161896 Upstream 31bp
chr1 1452641 1452641 1 + G A rs139994378 1452638 + 1452618 1452658 41 GCAGACACAGGAGCGGCTGTCAGGCAGTGCCAGCCCTGAGC GCAGACACAGGAGCGGCTGTCAGACAGTGCCAGCCCTGAGC < 41bp 0.811151681142433 0.59013345161996 0.8837193 0.836135 prediction 0.442036459044945 Functional Loss - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1452638 chr1:1452641 nonsynonymous SNV 0.004 1 24 hm5C_associated_SNPs_81180 0 0 0 0 1 ATAD3A chr1:1452547 3'AG 1452547 Downstream 95bp
chr4 7002978 7002978 1 + G A LGG 7002975 + 7002955 7002995 41 GCAACGAGTTAAATATCACCCACGGTGAGTGGCCTGCATGA GCAACGAGTTAAATATCACCCACAGTGAGTGGCCTGCATGA < 41bp 0.791948931482841 0.570933597631033 0.22931603 0.06612286 prediction 0.442030667703617 Functional Loss - TBC1D14 ENSG00000132405 CDS Human protein_coding chr4:7002975 chr4:7002978 nonsynonymous SNV 0.989 1 24 hm5C_associated_SNPs_81182 0 0 1 0 1 TBC1D14 chr4:7002978 5'GT 7002978 Upstream 1bp
chrX 70586259 70586259 1 + G T LUAD 70586256 + 70586236 70586276 41 GGACAGCGACGAAGATTCCGCTGGAGGCGGCCCATTTTCTT GGACAGCGACGAAGATTCCGCTGTAGGCGGCCCATTTTCTT < 41bp 0.721014237441438 0.352971712623635 0.22593841 0.21395189 prediction 0.442028474882876 Functional Loss - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70586256 chrX:70586259 nonsynonymous SNV 0.955 0 24 hm5C_associated_SNPs_81183 0 0 1 0 1 TAF1 chrX:70586344 5'GT 70586344 Upstream 86bp
chr5 156786054 156786054 1 + G A SKCM 156786051 + 156786031 156786071 41 AGCCACATCTACAGCTCCTACAGGAATTTCGTGGGGCCACC AGCCACATCTACAGCTCCTACAGAAATTTCGTGGGGCCACC < 41bp 0.777621164092139 0.556607104584286 0.5417755 0.24253905 prediction 0.442028119015706 Functional Loss - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156786051 chr5:156786054 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_81184 0 0 1 0 1 CYFIP2 chr5:156786013 3'AG 156786013 Downstream 42bp
chr12 123340819 123340819 1 + G A UCEC 123340816 + 123340796 123340836 41 CCCCCAGGGAAGGCCAGTGCCACGGAGGCGCGCTACAACAA CCCCCAGGGAAGGCCAGTGCCACAGAGGCGCGCTACAACAA < 41bp 0.787648909170263 0.566637559831444 0.73259133 0.5486529 prediction 0.442022698677638 Functional Loss - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123340816 chr12:123340819 synonymous SNV . 0 24 hm5C_associated_SNPs_81185 0 0 1 0 2 HIP1R chr12:123340803 3'AG 123340803 Downstream 17bp
chr12 123340819 123340819 1 + G A UCEC 123340816 + 123340796 123340836 41 CCCCCAGGGAAGGCCAGTGCCACGGAGGCGCGCTACAACAA CCCCCAGGGAAGGCCAGTGCCACAGAGGCGCGCTACAACAA < 41bp 0.787648909170263 0.566637559831444 0.73259133 0.5486529 prediction 0.442022698677638 Functional Loss - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123340816 chr12:123340819 synonymous SNV . 0 24 hm5C_associated_SNPs_81185 0 0 1 0 2 HIP1R chr12:123340891 5'GT 123340891 Upstream 73bp
chr2 25374820 25374820 1 + G T SARC 25374818 + 25374798 25374838 41 TGGAGGAGCAGGAGCGTGAGCGGCGGCGGCAGGTGGTGGAG TGGAGGAGCAGGAGCGTGAGCGTCGGCGGCAGGTGGTGGAG < 41bp 0.721008204262155 0.360725497439876 0.8951 0.6661859 prediction 0.44201640852431 Functional Loss - EFR3B ENSG00000084710 CDS Human protein_coding chr2:25374818 chr2:25374820 synonymous SNV . 0 23 hm5C_associated_SNPs_81188 0 0 0 0 2 EFR3B chr2:25374783 3'AG 25374783 Downstream 38bp
chr2 25374820 25374820 1 + G T SARC 25374818 + 25374798 25374838 41 TGGAGGAGCAGGAGCGTGAGCGGCGGCGGCAGGTGGTGGAG TGGAGGAGCAGGAGCGTGAGCGTCGGCGGCAGGTGGTGGAG < 41bp 0.721008204262155 0.360725497439876 0.8951 0.6661859 prediction 0.44201640852431 Functional Loss - EFR3B ENSG00000084710 CDS Human protein_coding chr2:25374818 chr2:25374820 synonymous SNV . 0 23 hm5C_associated_SNPs_81188 0 0 0 0 2 EFR3B chr2:25374889 5'GT 25374889 Upstream 70bp
chr5 155059 155059 1 + G A UCEC 155056 + 155036 155076 41 GCTGCCAGCTGACCGCAGACCTCGACGGCTCCTTTCCCTAC GCTGCCAGCTGACCGCAGACCTCAACGGCTCCTTTCCCTAC < 41bp 0.786957776813139 0.565951629043106 0.36394912 0.18064648 prediction 0.442012295540067 Functional Loss - PLEKHG4B ENSG00000153404 CDS Human protein_coding chr5:155056 chr5:155059 nonsynonymous SNV 0.020 1 24 hm5C_associated_SNPs_81189 0 0 0 0 1 PLEKHG4B chr5:155106 5'GT 155106 Upstream 48bp
chr1 201709147 201709147 1 + G A rs146374763 201709144 + 201709124 201709164 41 CGGTGAATGGCCGCCTGAGCCGGGGAAGATGCTTCATCTGC CGGTGAATGGCCGCCTGAGCCGGAGAAGATGCTTCATCTGC < 41bp 0.755606390846996 0.534602520155537 0.93041986 0.89856315 prediction 0.442007741382919 Functional Loss - IPO9-AS1 ENSG00000231871 ncRNA_intronic Human protein_coding chr1:201709144 chr1:201709147 . . 0 24 hm5C_associated_SNPs_81191 0 0 0 0 1 NAV1 chr1:201709204 5'GT 201709204 Upstream 58bp
chr8 126443464 126443464 1 + G A rs373667881 126443461 + 126443441 126443481 41 AGCCGAGCGCGAGCATGTGTCCCGGGCGCTGTGCATCCACA AGCCGAGCGCGAGCATGTGTCCCAGGCGCTGTGCATCCACA < 41bp 0.794255775044014 0.57325533185491 0.43340155 0.23025602 prediction 0.442000886378207 Functional Loss - TRIB1 ENSG00000173334 CDS Human protein_coding chr8:126443461 chr8:126443464 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_81194 0 0 0 0 1 TRIB1 chr8:126443504 5'GT 126443504 Upstream 41bp
chr16 815607 815607 1 + G T UCEC 815605 + 815585 815625 41 CTGGGCCAGCCCATCATCCGCAGCATCCCGCAGGTGAGACC CTGGGCCAGCCCATCATCCGCATCATCCCGCAGGTGAGACC < 41bp 0.721000202107064 0.369934136352976 0.38818917 0.1325438 prediction 0.442000404214128 Functional Loss - MSLN ENSG00000102854 CDS Human protein_coding chr16:815605 chr16:815607 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_81195 0 0 0 0 2 MSLN chr16:815527 3'AG 815527 Downstream 81bp
chr16 815607 815607 1 + G T UCEC 815605 + 815585 815625 41 CTGGGCCAGCCCATCATCCGCAGCATCCCGCAGGTGAGACC CTGGGCCAGCCCATCATCCGCATCATCCCGCAGGTGAGACC < 41bp 0.721000202107064 0.369934136352976 0.38818917 0.1325438 prediction 0.442000404214128 Functional Loss - MSLN ENSG00000102854 CDS Human protein_coding chr16:815605 chr16:815607 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_81195 0 0 0 0 2 MSLN chr16:815617 5'GT 815617 Upstream 11bp
chr9 137642396 137642396 1 + T C COAD 137642395 + 137642375 137642415 41 CCCTTGTCTTCAGGGCCCCCCTGGACGCCCAGGCCTTCCTG CCCTTGTCTTCAGGGCCCCCCCGGACGCCCAGGCCTTCCTG < 41bp 0.720998141943848 0.487561139334494 0.90095043 0.93243194 prediction 0.441996283887696 Functional Loss - COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137642395 chr9:137642396 synonymous SNV . 0 22 hm5C_associated_SNPs_81196 0 0 0 0 2 COL5A1 chr9:137642388 3'AG 137642388 Downstream 9bp
chr9 137642396 137642396 1 + T C COAD 137642395 + 137642375 137642415 41 CCCTTGTCTTCAGGGCCCCCCTGGACGCCCAGGCCTTCCTG CCCTTGTCTTCAGGGCCCCCCCGGACGCCCAGGCCTTCCTG < 41bp 0.720998141943848 0.487561139334494 0.90095043 0.93243194 prediction 0.441996283887696 Functional Loss - COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137642395 chr9:137642396 synonymous SNV . 0 22 hm5C_associated_SNPs_81196 0 0 0 0 2 COL5A1 chr9:137642462 5'GT 137642462 Upstream 67bp
chr19 49641542 49641542 1 + C T UCEC 49641540 + 49641520 49641560 41 GTGTCCAGCTCTGGCTTGGACTCGTTGGGCCGCTACCGCAG GTGTCCAGCTCTGGCTTGGACTTGTTGGGCCGCTACCGCAG < 41bp 0.720994119902457 0.445379271056079 0.32811022 0.30514485 prediction 0.441988239804913 Functional Loss - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49641540 chr19:49641542 nonsynonymous SNV 0.940 0 23 hm5C_associated_SNPs_81200 0 0 0 0 1 PPFIA3 chr19:49641462 3'AG 49641462 Downstream 81bp
chr19 55179186 55179186 1 + G A rs143761941 55179183 + 55179163 55179203 41 CTCTCCTCCCTCCCCACTGTCTGGGGAATTCCTGGACACAA CTCTCCTCCCTCCCCACTGTCTGAGGAATTCCTGGACACAA < 41bp 0.760699593120947 0.539713280448375 0.84898233 0.1409722 prediction 0.441972625345145 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55179183 chr19:55179186 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_81202 0 0 0 0 2 LILRB4 chr19:55179089 3'AG 55179089 Downstream 98bp
chr19 55179186 55179186 1 + G A rs143761941 55179183 + 55179163 55179203 41 CTCTCCTCCCTCCCCACTGTCTGGGGAATTCCTGGACACAA CTCTCCTCCCTCCCCACTGTCTGAGGAATTCCTGGACACAA < 41bp 0.760699593120947 0.539713280448375 0.84898233 0.1409722 prediction 0.441972625345145 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55179183 chr19:55179186 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_81202 0 0 0 0 2 LILRB4 chr19:55179244 5'GT 55179244 Upstream 59bp
chr5 149927859 149927859 1 + C T STAD 149927857 + 149927837 149927877 41 ACCGCCGGCTCTGACGCATCCTCGAAGCTGCGTGCCCTCCA ACCGCCGGCTCTGACGCATCCTTGAAGCTGCGTGCCCTCCA < 41bp 0.859623277661732 0.638638449222871 0.54197097 0.077405095 prediction 0.441969656877722 Functional Loss - NDST1 ENSG00000070614 CDS Human protein_coding chr5:149927857 chr5:149927859 nonsynonymous SNV 0.112 0 23 hm5C_associated_SNPs_81203 0 0 1 0 2 NDST1 chr5:149927780 3'AG 149927780 Downstream 80bp
chr5 149927859 149927859 1 + C T STAD 149927857 + 149927837 149927877 41 ACCGCCGGCTCTGACGCATCCTCGAAGCTGCGTGCCCTCCA ACCGCCGGCTCTGACGCATCCTTGAAGCTGCGTGCCCTCCA < 41bp 0.859623277661732 0.638638449222871 0.54197097 0.077405095 prediction 0.441969656877722 Functional Loss - NDST1 ENSG00000070614 CDS Human protein_coding chr5:149927857 chr5:149927859 nonsynonymous SNV 0.112 0 23 hm5C_associated_SNPs_81203 0 0 1 0 2 NDST1 chr5:149927950 5'GT 149927950 Upstream 92bp
chr19 45296779 45296779 1 + T C COAD 45296778 + 45296758 45296798 41 TGCCGCTGCGAGATCAAGGGCTGGGAGGCCGTGAGTATCTA TGCCGCTGCGAGATCAAGGGCCGGGAGGCCGTGAGTATCTA < 41bp 0.720984418240383 0.476868241848469 0.27978677 0.6435509 prediction 0.441968836480766 Functional Loss - CBLC ENSG00000142273 CDS Human protein_coding chr19:45296778 chr19:45296779 nonsynonymous SNV 0.034 1 22 hm5C_associated_SNPs_81204 0 0 0 0 2 CBLC chr19:45296731 3'AG 45296731 Downstream 49bp
chr19 45296779 45296779 1 + T C COAD 45296778 + 45296758 45296798 41 TGCCGCTGCGAGATCAAGGGCTGGGAGGCCGTGAGTATCTA TGCCGCTGCGAGATCAAGGGCCGGGAGGCCGTGAGTATCTA < 41bp 0.720984418240383 0.476868241848469 0.27978677 0.6435509 prediction 0.441968836480766 Functional Loss - CBLC ENSG00000142273 CDS Human protein_coding chr19:45296778 chr19:45296779 nonsynonymous SNV 0.034 1 22 hm5C_associated_SNPs_81204 0 0 0 0 2 CBLC chr19:45296877 5'GT 45296877 Upstream 99bp
chr14 95111300 95111300 1 + C T SKCM 95111298 + 95111278 95111318 41 TTCTGTCTCTCCGCAGAGAACTCGATTTCCACTTCCCCAAA TTCTGTCTCTCCGCAGAGAACTTGATTTCCACTTCCCCAAA < 41bp 0.803589809012596 0.5826088203501 0.2753949 0.10112673 prediction 0.441961977324991 Functional Loss - SERPINA13P ENSG00000187483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr14:95111298 chr14:95111300 . . 0 23 hm5C_associated_SNPs_81207 0 0 0 0 1 SERPINA13P chr14:95111294 3'AG 95111294 Downstream 7bp
chr6 167719447 167719447 1 + G A SKCM 167719444 + 167719424 167719464 41 GGCATCCAGTTCGTCGGCTACGTGATGATCTGCTTCTCGGC GGCATCCAGTTCGTCGGCTACGTAATGATCTGCTTCTCGGC < 41bp 0.795286568684776 0.574308133943769 0.43658164 0.15652615 prediction 0.441956869482012 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167719444 chr6:167719447 synonymous SNV . 0 24 hm5C_associated_SNPs_81210 0 0 0 0 2 UNC93A chr6:167719403 3'AG 167719403 Downstream 45bp
chr6 167719447 167719447 1 + G A SKCM 167719444 + 167719424 167719464 41 GGCATCCAGTTCGTCGGCTACGTGATGATCTGCTTCTCGGC GGCATCCAGTTCGTCGGCTACGTAATGATCTGCTTCTCGGC < 41bp 0.795286568684776 0.574308133943769 0.43658164 0.15652615 prediction 0.441956869482012 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167719444 chr6:167719447 synonymous SNV . 0 24 hm5C_associated_SNPs_81210 0 0 0 0 2 UNC93A chr6:167719538 5'GT 167719538 Upstream 92bp
chr16 812700 812700 1 + G A READ 812697 + 812677 812717 41 GACCATGGCCTTGCCAACGGCTCGACCCCTGTTGGGGTCCT GACCATGGCCTTGCCAACGGCTCAACCCCTGTTGGGGTCCT < 41bp 0.774342736416411 0.55336791684308 0.08618936 0.067609996 prediction 0.441949639146663 Functional Loss - MSLN ENSG00000102854 CDS Human protein_coding chr16:812697 chr16:812700 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_81211 0 0 0 0 2 MSLN chr16:812672 3'AG 812672 Downstream 29bp
chr16 812700 812700 1 + G A READ 812697 + 812677 812717 41 GACCATGGCCTTGCCAACGGCTCGACCCCTGTTGGGGTCCT GACCATGGCCTTGCCAACGGCTCAACCCCTGTTGGGGTCCT < 41bp 0.774342736416411 0.55336791684308 0.08618936 0.067609996 prediction 0.441949639146663 Functional Loss - MSLN ENSG00000102854 CDS Human protein_coding chr16:812697 chr16:812700 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_81211 0 0 0 0 2 MSLN chr16:812765 5'GT 812765 Upstream 66bp
chr2 27830727 27830727 1 + G A STAD 27830724 + 27830704 27830744 41 TCTTGCAGATATCCTTCTTTCCAGAGTCAGGACAGCCAGAG TCTTGCAGATATCCTTCTTTCCAAAGTCAGGACAGCCAGAG < 41bp 0.762632995298581 0.541661156798203 0.4504482 0.2614079 prediction 0.441943677000755 Functional Loss - ZNF512 ENSG00000243943 CDS Human protein_coding chr2:27830724 chr2:27830727 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_81214 0 0 1 0 1 ZNF512 chr2:27830712 3'AG 27830712 Downstream 16bp
chr5 118810137 118810137 1 + G A UCEC 118810134 + 118810114 118810154 41 AGAAGGTTGTGAAGACAGCCCTGGATGCTTTTGGAAGAATA AGAAGGTTGTGAAGACAGCCCTGAATGCTTTTGGAAGAATA < 41bp 0.771608980622428 0.550637493354153 0.2366544 0.118839085 prediction 0.441942974536549 Functional Loss - HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118810134 chr5:118810137 nonsynonymous SNV 0.988 3 24 hm5C_associated_SNPs_81216 0 0 1 0 2 HSD17B4 chr5:118810096 3'AG 118810096 Downstream 42bp
chr5 118810137 118810137 1 + G A UCEC 118810134 + 118810114 118810154 41 AGAAGGTTGTGAAGACAGCCCTGGATGCTTTTGGAAGAATA AGAAGGTTGTGAAGACAGCCCTGAATGCTTTTGGAAGAATA < 41bp 0.771608980622428 0.550637493354153 0.2366544 0.118839085 prediction 0.441942974536549 Functional Loss - HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118810134 chr5:118810137 nonsynonymous SNV 0.988 3 24 hm5C_associated_SNPs_81216 0 0 1 0 2 HSD17B4 chr5:118810155 5'GT 118810155 Upstream 19bp
chr14 21499185 21499185 1 + G A SKCM 21499182 + 21499162 21499202 41 ACTGACCAGGGCCAAGAACGCCCGAACCATCACGTTTCAAC ACTGACCAGGGCCAAGAACGCCCAAACCATCACGTTTCAAC < 41bp 0.730222271803336 0.5092539329526 0.08313134 0.09527841 prediction 0.441936677701471 Functional Loss - TPPP2 ENSG00000179636 CDS Human protein_coding chr14:21499182 chr14:21499185 nonsynonymous SNV 0.990 2 24 hm5C_associated_SNPs_81217 0 0 0 0 1 TPPP2 chr14:21499171 3'AG 21499171 Downstream 15bp
chr13 45694817 45694817 1 + G A BRCA 45694814 + 45694794 45694834 41 GCCGAGCGCGGGGAACTCGACTTGACCGGCGCCAAACAGAA GCCGAGCGCGGGGAACTCGACTTAACCGGCGCCAAACAGAA < 41bp 0.739981778457671 0.519015058186182 0.14792061 0.15163419 prediction 0.441933440542979 Functional Loss - GTF2F2 ENSG00000188342 CDS Human protein_coding chr13:45694814 chr13:45694817 synonymous SNV . 0 24 hm5C_associated_SNPs_81219 0 0 1 0 1 GTF2F2 chr13:45694856 5'GT 45694856 Upstream 40bp
chr1 173455459 173455459 1 + G A CESC 173455456 + 173455436 173455476 41 CTCTACCCAGCTACCACTGGCAGGAACTTTGATGAGATTCT CTCTACCCAGCTACCACTGGCAGAAACTTTGATGAGATTCT < 41bp 0.766186780464261 0.545234379170337 0.90224326 0.58763105 prediction 0.441904802587848 Functional Loss - PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173455456 chr1:173455459 synonymous SNV . 0 24 hm5C_associated_SNPs_81224 0 0 1 0 2 PRDX6 chr1:173455394 3'AG 173455394 Downstream 66bp
chr1 173455459 173455459 1 + G A CESC 173455456 + 173455436 173455476 41 CTCTACCCAGCTACCACTGGCAGGAACTTTGATGAGATTCT CTCTACCCAGCTACCACTGGCAGAAACTTTGATGAGATTCT < 41bp 0.766186780464261 0.545234379170337 0.90224326 0.58763105 prediction 0.441904802587848 Functional Loss - PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173455456 chr1:173455459 synonymous SNV . 0 24 hm5C_associated_SNPs_81224 0 0 1 0 2 PRDX6 chr1:173455540 5'GT 173455540 Upstream 82bp
chr9 90499541 90499541 1 + C T CESC 90499539 + 90499519 90499559 41 CCTGAGGGAGCTGGAGGAGACTCGGGACCTGAACTACCTTC CCTGAGGGAGCTGGAGGAGACTTGGGACCTGAACTACCTTC < 41bp 0.817600311401387 0.596654495654786 0.8593962 0.86133623 prediction 0.441891631493202 Functional Loss - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90499539 chr9:90499541 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_81226 0 0 0 0 2 SPATA31E1 chr9:90499506 3'AG 90499506 Downstream 36bp
chr9 90499541 90499541 1 + C T CESC 90499539 + 90499519 90499559 41 CCTGAGGGAGCTGGAGGAGACTCGGGACCTGAACTACCTTC CCTGAGGGAGCTGGAGGAGACTTGGGACCTGAACTACCTTC < 41bp 0.817600311401387 0.596654495654786 0.8593962 0.86133623 prediction 0.441891631493202 Functional Loss - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90499539 chr9:90499541 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_81226 0 0 0 0 2 SPATA31E1 chr9:90499566 5'GT 90499566 Upstream 26bp
chr10 115489144 115489144 1 + G A UCEC 115489141 + 115489121 115489161 41 TCTGCTCCATCCTGGAGGAGCACGGAAAAGACCTGGAAATC TCTGCTCCATCCTGGAGGAGCACAGAAAAGACCTGGAAATC < 41bp 0.771492354176248 0.5505465932928 0.5950519 0.23418269 prediction 0.441891521766895 Functional Loss - CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489141 chr10:115489144 nonsynonymous SNV 0.852 4 24 hm5C_associated_SNPs_81227 0 0 0 0 1 CASP7 chr10:115489070 3'AG 115489070 Downstream 75bp
chr6 146625884 146625884 1 + C T COAD 146625882 + 146625862 146625902 41 AAACTGAGGCTGGACACTAACACGAGGAATCCCTGGTTCCC AAACTGAGGCTGGACACTAACATGAGGAATCCCTGGTTCCC < 41bp 0.852298255637267 0.631352969306652 0.17543635 0.27622718 prediction 0.44189057266123 Functional Loss - GRM1 ENSG00000152822 CDS Human protein_coding chr6:146625882 chr6:146625884 nonsynonymous SNV 0.925 3 23 hm5C_associated_SNPs_81228 0 0 0 0 1 GRM1 chr6:146625982 5'GT 146625982 Upstream 99bp
chr11 1086014 1086014 1 + C T STAD 1086012 + 1085992 1086032 41 TCACCACGTGGCCTACACCACGCGGGAGGTGGGCCAGTACC TCACCACGTGGCCTACACCACGTGGGAGGTGGGCCAGTACC < 41bp 0.720944554353581 0.476110917291613 0.6579594 0.7745316 prediction 0.441889108707161 Functional Loss - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1086012 chr11:1086014 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_81229 0 0 0 0 1 MUC2 chr11:1085936 3'AG 1085936 Downstream 79bp
chr2 176965100 176965100 1 + G A COAD 176965097 + 176965077 176965117 41 CTTGCCTGCGACCTTCACTGCCCGACGGTAAACGGTGCCCA CTTGCCTGCGACCTTCACTGCCCAACGGTAAACGGTGCCCA < 41bp 0.720940929955925 0.480472293258479 0.15633675 0.117651105 prediction 0.44188185991185 Functional Loss - HOXD12 ENSG00000170178 CDS Human protein_coding chr2:176965097 chr2:176965100 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_81233 0 0 0 0 1 HOXD12 chr2:176965103 5'GT 176965103 Upstream 4bp
chr2 3691323 3691323 1 + C T LUAD 3691321 + 3691301 3691341 41 CTGCCTTACCCCACAGCTGTCGCCGGTGTGCGCGAGACGGA CTGCCTTACCCCACAGCTGTCGTCGGTGTGCGCGAGACGGA < 41bp 0.791056765540182 0.570119448801852 0.38664693 0.41433498 prediction 0.441874633476659 Functional Loss - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3691321 chr2:3691323 nonsynonymous SNV 0.029 3 23 hm5C_associated_SNPs_81234 0 0 0 0 1 COLEC11 chr2:3691317 3'AG 3691317 Downstream 7bp
chr20 13090813 13090813 1 + G A SKCM 13090810 + 13090790 13090830 41 TGCTGTCATCTATGGCCAGCCTCGAACCCGCAGAGCTTGGA TGCTGTCATCTATGGCCAGCCTCAAACCCGCAGAGCTTGGA < 41bp 0.739851222572394 0.518916597751999 0.31046185 0.21980381 prediction 0.441869249640789 Functional Loss - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13090810 chr20:13090813 nonsynonymous SNV 0.662 5 24 hm5C_associated_SNPs_81235 0 0 1 0 2 SPTLC3 chr20:13090759 3'AG 13090759 Downstream 55bp
chr20 13090813 13090813 1 + G A SKCM 13090810 + 13090790 13090830 41 TGCTGTCATCTATGGCCAGCCTCGAACCCGCAGAGCTTGGA TGCTGTCATCTATGGCCAGCCTCAAACCCGCAGAGCTTGGA < 41bp 0.739851222572394 0.518916597751999 0.31046185 0.21980381 prediction 0.441869249640789 Functional Loss - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13090810 chr20:13090813 nonsynonymous SNV 0.662 5 24 hm5C_associated_SNPs_81235 0 0 1 0 2 SPTLC3 chr20:13090864 5'GT 13090864 Upstream 52bp
chr11 64893024 64893024 1 + G A rs34535921 64893021 + 64893001 64893041 41 ATGCACAACATCCCCGTCTACAAGGACATCACGCATGGCAA ATGCACAACATCCCCGTCTACAAAGACATCACGCATGGCAA < 41bp 0.720930939030883 0.484495432437628 0.20855695 0.06666663 prediction 0.441861878061766 Functional Loss - MRPL49 ENSG00000149792 CDS Human protein_coding chr11:64893021 chr11:64893024 nonsynonymous SNV 0.994 0 24 hm5C_associated_SNPs_81238 0 0 1 0 2 MRPL49 chr11:64892960 3'AG 64892960 Downstream 65bp
chr11 64893024 64893024 1 + G A rs34535921 64893021 + 64893001 64893041 41 ATGCACAACATCCCCGTCTACAAGGACATCACGCATGGCAA ATGCACAACATCCCCGTCTACAAAGACATCACGCATGGCAA < 41bp 0.720930939030883 0.484495432437628 0.20855695 0.06666663 prediction 0.441861878061766 Functional Loss - MRPL49 ENSG00000149792 CDS Human protein_coding chr11:64893021 chr11:64893024 nonsynonymous SNV 0.994 0 24 hm5C_associated_SNPs_81238 0 0 1 0 2 MRPL49 chr11:64893084 5'GT 64893084 Upstream 61bp
chr1 15768952 15768952 1 + G A UCEC 15768949 + 15768929 15768969 41 CTTCCTCTGCCCAGCAACACCCGGACCTACCGTGTGGCCGT CTTCCTCTGCCCAGCAACACCCGAACCTACCGTGTGGCCGT < 41bp 0.785428768059278 0.564499065520308 0.4320333 0.13360599 prediction 0.441859405077938 Functional Loss - CTRC ENSG00000162438 CDS Human protein_coding chr1:15768949 chr1:15768952 nonsynonymous SNV 0.301 0 24 hm5C_associated_SNPs_81240 0 0 0 0 1 CTRC chr1:15768943 3'AG 15768943 Downstream 10bp
chr19 7712299 7712299 1 + G A STAD 7712296 + 7712276 7712316 41 CATAGAAGCCCGGGCGGGCCCCCGGCTCATCGTGTATGTCA CATAGAAGCCCGGGCGGGCCCCCAGCTCATCGTGTATGTCA < 41bp 0.74454775300762 0.523620342743054 0.15192223 0.21674022 prediction 0.441854820529133 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7712296 chr19:7712299 nonsynonymous SNV 0.005 3 24 hm5C_associated_SNPs_81241 0 0 1 0 2 STXBP2 chr19:7712240 3'AG 7712240 Downstream 60bp
chr19 7712299 7712299 1 + G A STAD 7712296 + 7712276 7712316 41 CATAGAAGCCCGGGCGGGCCCCCGGCTCATCGTGTATGTCA CATAGAAGCCCGGGCGGGCCCCCAGCTCATCGTGTATGTCA < 41bp 0.74454775300762 0.523620342743054 0.15192223 0.21674022 prediction 0.441854820529133 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7712296 chr19:7712299 nonsynonymous SNV 0.005 3 24 hm5C_associated_SNPs_81241 0 0 1 0 2 STXBP2 chr19:7712397 5'GT 7712397 Upstream 99bp
chr11 3423084 3423084 1 + C T SKCM 3423082 + 3423062 3423102 41 GAAGCTGGGCGGCACGCACTCTCCGTTCAGGGCCTGGTAGG GAAGCTGGGCGGCACGCACTCTTCGTTCAGGGCCTGGTAGG < 41bp 0.820332399058625 0.599406969747353 0.052333564 0.014404982 prediction 0.441850858622546 Functional Loss - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3423082 chr11:3423084 . . 0 23 hm5C_associated_SNPs_81242 0 0 0 0 2 TSSC2 chr11:3422989 3'AG 3422989 Downstream 96bp
chr11 3423084 3423084 1 + C T SKCM 3423082 + 3423062 3423102 41 GAAGCTGGGCGGCACGCACTCTCCGTTCAGGGCCTGGTAGG GAAGCTGGGCGGCACGCACTCTTCGTTCAGGGCCTGGTAGG < 41bp 0.820332399058625 0.599406969747353 0.052333564 0.014404982 prediction 0.441850858622546 Functional Loss - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3423082 chr11:3423084 . . 0 23 hm5C_associated_SNPs_81242 0 0 0 0 2 TSSC2 chr11:3423097 5'GT 3423097 Upstream 14bp
chr17 37881050 37881050 1 + G A rs186232310 37881047 + 37881027 37881067 41 CTGGGCATCTGCCTGACATCCACGGTGCAGCTGGTGACACA CTGGGCATCTGCCTGACATCCACAGTGCAGCTGGTGACACA < 41bp 0.767845648379892 0.546923960543438 0.15690216 0.060278684 prediction 0.441843375672907 Functional Loss - ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37881047 chr17:37881050 synonymous SNV . 0 24 hm5C_associated_SNPs_81245 0 0 1 0 1 ERBB2 chr17:37880979 3'AG 37880979 Downstream 72bp
chr17 7480984 7480984 1 + C T LUAD 7480982 + 7480962 7481002 41 CGGAGGAAGGTGGACTGGCTCACCGAGAAGATGCATGCTCG CGGAGGAAGGTGGACTGGCTCATCGAGAAGATGCATGCTCG < 41bp 0.720919967241852 0.431809942782966 0.12582177 0.10096684 prediction 0.441839934483704 Functional Loss - EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7480982 chr17:7480984 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_81246 0 0 1 0 2 EIF4A1 chr17:7480887 3'AG 7480887 Downstream 98bp
chr17 7480984 7480984 1 + C T LUAD 7480982 + 7480962 7481002 41 CGGAGGAAGGTGGACTGGCTCACCGAGAAGATGCATGCTCG CGGAGGAAGGTGGACTGGCTCATCGAGAAGATGCATGCTCG < 41bp 0.720919967241852 0.431809942782966 0.12582177 0.10096684 prediction 0.441839934483704 Functional Loss - EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7480982 chr17:7480984 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_81246 0 0 1 0 2 EIF4A1 chr17:7481024 5'GT 7481024 Upstream 41bp
chr3 195944764 195944764 1 + C T rs34352044 195944761 + 195944741 195944781 41 AAGACCAATTACGGCATCCCCTCCGCCTGCTTCTCTCAGCC AAGACCAATTACGGCATCCCCTCTGCCTGCTTCTCTCAGCC < 41bp 0.72652438658631 0.505606917411829 0.05127445 0.09269047 prediction 0.441834938348962 Functional Loss - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195944761 chr3:195944764 synonymous SNV . 0 24 hm5C_associated_SNPs_81248 0 0 1 0 2 SLC51A chr3:195944713 3'AG 195944713 Downstream 52bp
chr3 195944764 195944764 1 + C T rs34352044 195944761 + 195944741 195944781 41 AAGACCAATTACGGCATCCCCTCCGCCTGCTTCTCTCAGCC AAGACCAATTACGGCATCCCCTCTGCCTGCTTCTCTCAGCC < 41bp 0.72652438658631 0.505606917411829 0.05127445 0.09269047 prediction 0.441834938348962 Functional Loss - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195944761 chr3:195944764 synonymous SNV . 0 24 hm5C_associated_SNPs_81248 0 0 1 0 2 SLC51A chr3:195944807 5'GT 195944807 Upstream 44bp
chr9 96436071 96436071 1 + G T UCEC 96436068 + 96436048 96436088 41 CGACTGCTGAAGAGGGCTGCCAAGAACAGTGTCGACCTGGA CGACTGCTGAAGAGGGCTGCCAATAACAGTGTCGACCTGGA < 41bp 0.720916701747394 0.3218896605476 0.37040108 0.19406784 prediction 0.441833403494788 Functional Loss - PHF2 ENSG00000197724;ENSG00000197724 exonic;splicing Human protein_coding chr9:96436068 chr9:96436071 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_81249 0 0 1 0 1 PHF2 chr9:96436144 5'GT 96436144 Upstream 74bp
chr1 171753612 171753612 1 + C T UCEC 171753610 + 171753590 171753630 41 CAGCCCCACTGTGAAACCATCGCGGGACAATCATTTTGCGA CAGCCCCACTGTGAAACCATCGTGGGACAATCATTTTGCGA < 41bp 0.720915956157917 0.453056273892086 0.8037052 0.8777264 prediction 0.441831912315833 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171753610 chr1:171753612 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_81250 0 0 1 0 1 METTL13 chr1:171753639 5'GT 171753639 Upstream 28bp
chr1 236341796 236341796 1 + G T LUAD 236341794 + 236341774 236341814 41 CTGTGCTGTGCTGGTAAAGACGGGAAATTGGGAGAGGAAGG CTGTGCTGTGCTGGTAAAGACGTGAAATTGGGAGAGGAAGG < 41bp 0.904072970759643 0.683159812000369 0.82676697 0.37131548 prediction 0.441826317518549 Functional Loss - GPR137B ENSG00000077585 CDS Human protein_coding chr1:236341794 chr1:236341796 stopgain 0.383 0 23 hm5C_associated_SNPs_81253 0 0 1 1 1 GPR137B chr1:236341714 3'AG 236341714 Downstream 83bp
chr8 67066355 67066355 1 + C T CESC 67066352 + 67066332 67066372 41 AGTCCCTGCAGCAGCAGAAACTGCGGATCCCTTGTTTTACC AGTCCCTGCAGCAGCAGAAACTGTGGATCCCTTGTTTTACC < 41bp 0.72091234141716 0.497338956926122 0.25465232 0.055826932 prediction 0.441824682834321 Functional Loss - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67066352 chr8:67066355 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_81254 0 0 0 0 1 TRIM55 chr8:67066282 3'AG 67066282 Downstream 74bp
chr13 111870157 111870157 1 + G A UCEC 111870154 + 111870134 111870174 41 ACCCGTGTGGAAGAGGGAGGCTGGTGGGAGGGCACACTCAA ACCCGTGTGGAAGAGGGAGGCTGATGGGAGGGCACACTCAA < 41bp 0.720911697786325 0.493582336775408 0.86701655 0.7791216 prediction 0.44182339557265 Functional Loss - ARHGEF7 ENSG00000102606 CDS Human protein_coding chr13:111870154 chr13:111870157 stopgain 1.000 1 24 hm5C_associated_SNPs_81255 0 0 1 1 1 ARHGEF7 chr13:111870227 5'GT 111870227 Upstream 71bp
chr6 42643833 42643833 1 + G A OV 42643830 + 42643810 42643850 41 CATTTCCTGCGTTGCAGTGTCAGGATTTTTCAGGGATCAGC CATTTCCTGCGTTGCAGTGTCAGAATTTTTCAGGGATCAGC < 41bp 0.727789465954099 0.506877860749809 0.8827628 0.38779223 prediction 0.441823210408579 Functional Loss - UBR2 ENSG00000024048 CDS Human protein_coding chr6:42643830 chr6:42643833 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_81256 0 0 1 0 2 UBR2 chr6:42643794 3'AG 42643794 Downstream 40bp
chr6 42643833 42643833 1 + G A OV 42643830 + 42643810 42643850 41 CATTTCCTGCGTTGCAGTGTCAGGATTTTTCAGGGATCAGC CATTTCCTGCGTTGCAGTGTCAGAATTTTTCAGGGATCAGC < 41bp 0.727789465954099 0.506877860749809 0.8827628 0.38779223 prediction 0.441823210408579 Functional Loss - UBR2 ENSG00000024048 CDS Human protein_coding chr6:42643830 chr6:42643833 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_81256 0 0 1 0 2 UBR2 chr6:42643929 5'GT 42643929 Upstream 97bp
chr3 148712035 148712035 1 + C T rs61733452 148712033 + 148712013 148712053 41 CCACCAGGAGGCTGGTCGTGCTCGCCACCCCTCAGGTCTCA CCACCAGGAGGCTGGTCGTGCTTGCCACCCCTCAGGTCTCA < 41bp 0.720909017430666 0.441202099786677 0.24010396 0.10824072 prediction 0.441818034861332 Functional Loss - GYG1 ENSG00000163754 CDS Human protein_coding chr3:148712033 chr3:148712035 synonymous SNV . 0 23 hm5C_associated_SNPs_81258 1 0 1 0 1 GYG1 chr3:148712064 5'GT 148712064 Upstream 30bp
chr3 148712036 148712036 1 + G A UCEC 148712033 + 148712013 148712053 41 CCACCAGGAGGCTGGTCGTGCTCGCCACCCCTCAGGTCTCA CCACCAGGAGGCTGGTCGTGCTCACCACCCCTCAGGTCTCA < 41bp 0.720909017430666 0.482723416026169 0.24010396 0.11217895 prediction 0.441818034861332 Functional Loss - GYG1 ENSG00000163754 CDS Human protein_coding chr3:148712033 chr3:148712036 nonsynonymous SNV 0.018 0 24 hm5C_associated_SNPs_81259 0 0 1 0 1 GYG1 chr3:148712064 5'GT 148712064 Upstream 29bp
chrX 150155604 150155604 1 + T C SKCM 150155603 + 150155583 150155623 41 GTATGTAATTCTTCCAAGGTCTGGATTCTTCCTGTTCTGTT GTATGTAATTCTTCCAAGGTCCGGATTCTTCCTGTTCTGTT < 41bp 0.722821567291326 0.501914319694795 0.051356316 0.18431664 prediction 0.441814495193062 Functional Loss - HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150155603 chrX:150155604 synonymous SNV . 0 22 hm5C_associated_SNPs_81260 0 0 1 0 1 HMGB3 chrX:150155601 3'AG 150155601 Downstream 4bp
chr1 16358235 16358235 1 + G A BLCA 16358232 + 16358212 16358252 41 CATGTGAGGGTGGAGCACTTCATGAACCACAGCATCACCAC CATGTGAGGGTGGAGCACTTCATAAACCACAGCATCACCAC < 41bp 0.758518101975004 0.537617414626796 0.07343626 0.03398475 prediction 0.441801374696416 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16358232 chr1:16358235 nonsynonymous SNV 0.652 3 24 hm5C_associated_SNPs_81262 0 0 0 0 2 CLCNKA chr1:16358205 3'AG 16358205 Downstream 31bp
chr1 16358235 16358235 1 + G A BLCA 16358232 + 16358212 16358252 41 CATGTGAGGGTGGAGCACTTCATGAACCACAGCATCACCAC CATGTGAGGGTGGAGCACTTCATAAACCACAGCATCACCAC < 41bp 0.758518101975004 0.537617414626796 0.07343626 0.03398475 prediction 0.441801374696416 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16358232 chr1:16358235 nonsynonymous SNV 0.652 3 24 hm5C_associated_SNPs_81262 0 0 0 0 2 CLCNKA chr1:16358289 5'GT 16358289 Upstream 55bp
chr12 56526515 56526515 1 + G A STAD 56526512 + 56526492 56526532 41 GTGTTCCCCAGGTGATGGTACACGAGGTCCCAGGGCAGGAG GTGTTCCCCAGGTGATGGTACACAAGGTCCCAGGGCAGGAG < 41bp 0.804040894747924 0.583140583535454 0.47164375 0.23758087 prediction 0.441800622424942 Functional Loss - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56526512 chr12:56526515 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_81263 0 0 1 0 2 ESYT1 chr12:56526503 3'AG 56526503 Downstream 13bp
chr12 56526515 56526515 1 + G A STAD 56526512 + 56526492 56526532 41 GTGTTCCCCAGGTGATGGTACACGAGGTCCCAGGGCAGGAG GTGTTCCCCAGGTGATGGTACACAAGGTCCCAGGGCAGGAG < 41bp 0.804040894747924 0.583140583535454 0.47164375 0.23758087 prediction 0.441800622424942 Functional Loss - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56526512 chr12:56526515 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_81263 0 0 1 0 2 ESYT1 chr12:56526585 5'GT 56526585 Upstream 71bp
chr17 37872116 37872116 1 + G A UCEC 37872113 + 37872093 37872133 41 ACCCACCTCTGCTTCGTGCACACGGTGCCCTGGGACCAGCT ACCCACCTCTGCTTCGTGCACACAGTGCCCTGGGACCAGCT < 41bp 0.720895237960815 0.474829342234893 0.1931422 0.03837475 prediction 0.44179047592163 Functional Loss - ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37872113 chr17:37872116 synonymous SNV . 0 24 hm5C_associated_SNPs_81267 0 0 1 0 1 ERBB2 chr17:37872192 5'GT 37872192 Upstream 77bp
chr14 24108433 24108433 1 + C T COAD 24108431 + 24108411 24108451 41 GTCTGGCCCGGGACGGGGCCCACGTGGTCATCAGCAGCCGG GTCTGGCCCGGGACGGGGCCCATGTGGTCATCAGCAGCCGG < 41bp 0.819342150903496 0.598452743724667 0.13498786 0.15518564 prediction 0.441778814357658 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24108431 chr14:24108433 synonymous SNV . 0 23 hm5C_associated_SNPs_81269 0 0 1 0 1 DHRS2 chr14:24108388 3'AG 24108388 Downstream 46bp
chr1 43788363 43788363 1 + G A UCEC 43788360 + 43788340 43788380 41 CTGTTTGAGAACTTCACTTACGCGGGCATTGATGCCACAGC CTGTTTGAGAACTTCACTTACGCAGGCATTGATGCCACAGC < 41bp 0.741683413203162 0.520795387439342 0.43273425 0.128914 prediction 0.441776051527641 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43788360 chr1:43788363 synonymous SNV . 0 24 hm5C_associated_SNPs_81270 0 0 0 0 1 TIE1 chr1:43788322 3'AG 43788322 Downstream 42bp
chr14 75190037 75190037 1 + G T SARC 75190034 + 75190014 75190054 41 AGAAATTGGGGCAGAAGTATCGAGTGGCTCTAAGGTAGGAA AGAAATTGGGGCAGAAGTATCGATTGGCTCTAAGGTAGGAA < 41bp 0.720882164043151 0.331254553409443 0.8110185 0.13668916 prediction 0.441764328086301 Functional Loss - FCF1 ENSG00000119616 CDS Human protein_coding chr14:75190034 chr14:75190037 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_81274 0 0 1 1 2 FCF1 chr14:75189975 3'AG 75189975 Downstream 63bp
chr14 75190037 75190037 1 + G T SARC 75190034 + 75190014 75190054 41 AGAAATTGGGGCAGAAGTATCGAGTGGCTCTAAGGTAGGAA AGAAATTGGGGCAGAAGTATCGATTGGCTCTAAGGTAGGAA < 41bp 0.720882164043151 0.331254553409443 0.8110185 0.13668916 prediction 0.441764328086301 Functional Loss - FCF1 ENSG00000119616 CDS Human protein_coding chr14:75190034 chr14:75190037 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_81274 0 0 1 1 2 FCF1 chr14:75190047 5'GT 75190047 Upstream 11bp
chr5 156760448 156760448 1 + C T SKCM 156760445 + 156760425 156760465 41 TTTGAGAGTGAGGACCTGACCTCCATTGTGGTAAGAGTCTG TTTGAGAGTGAGGACCTGACCTCTATTGTGGTAAGAGTCTG < 41bp 0.774695558760668 0.553813860120107 0.9372208 0.8916496 prediction 0.44176339728112 Functional Loss - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156760445 chr5:156760448 synonymous SNV . 0 24 hm5C_associated_SNPs_81275 0 0 1 0 1 CYFIP2 chr5:156760454 5'GT 156760454 Upstream 7bp
chr15 75182424 75182424 1 + C T rs143982014 75182422 + 75182402 75182442 41 GCAGGGGGCGAGCATGGCCGCTCCGCGAGGTGAGCCATTGG GCAGGGGGCGAGCATGGCCGCTTCGCGAGGTGAGCCATTGG < 41bp 0.757173593209193 0.536292750904064 0.3966211 0.27244443 prediction 0.441761684610259 Functional Loss - MPI ENSG00000178802 CDS Human protein_coding chr15:75182422 chr15:75182424 nonsynonymous SNV 0.016 1 23 hm5C_associated_SNPs_81276 2 0 0 0 1 MPI chr15:75182430 5'GT 75182430 Upstream 7bp
chr17 6012996 6012996 1 + C T UCEC 6012993 + 6012973 6013013 41 ACCCTACCCCCCGGTTCAACCTGCGGGATGCCATGGACAGC ACCCTACCCCCCGGTTCAACCTGTGGGATGCCATGGACAGC < 41bp 0.747430722557924 0.526560910000253 0.32830858 0.18502036 prediction 0.441739625115342 Functional Loss - WSCD1 ENSG00000179314 CDS Human protein_coding chr17:6012993 chr17:6012996 nonsynonymous SNV 0.855 1 24 hm5C_associated_SNPs_81282 0 0 1 0 2 WSCD1 chr17:6012927 3'AG 6012927 Downstream 70bp
chr17 6012996 6012996 1 + C T UCEC 6012993 + 6012973 6013013 41 ACCCTACCCCCCGGTTCAACCTGCGGGATGCCATGGACAGC ACCCTACCCCCCGGTTCAACCTGTGGGATGCCATGGACAGC < 41bp 0.747430722557924 0.526560910000253 0.32830858 0.18502036 prediction 0.441739625115342 Functional Loss - WSCD1 ENSG00000179314 CDS Human protein_coding chr17:6012993 chr17:6012996 nonsynonymous SNV 0.855 1 24 hm5C_associated_SNPs_81282 0 0 1 0 2 WSCD1 chr17:6013086 5'GT 6013086 Upstream 91bp
chr3 53220294 53220294 1 + G A STAD 53220291 + 53220271 53220311 41 AGTGCACCATGGTTGAGAAGCGGGTGCTGACACTTGCCGCA AGTGCACCATGGTTGAGAAGCGGATGCTGACACTTGCCGCA < 41bp 0.811764822378985 0.590899046898776 0.5854231 0.359713 prediction 0.441731550960416 Functional Loss - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53220291 chr3:53220294 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_81285 0 0 1 0 1 PRKCD chr3:53220356 5'GT 53220356 Upstream 63bp
chr19 17845108 17845108 1 + G A STAD 17845105 + 17845085 17845125 41 ACCCTGATCCCCACTTTCGACTCGGTGGCCATGCATACGTG ACCCTGATCCCCACTTTCGACTCAGTGGCCATGCATACGTG < 41bp 0.787116812771057 0.566251221375357 0.4014998 0.15100709 prediction 0.4417311827914 Functional Loss - MAP1S ENSG00000130479 CDS Human protein_coding chr19:17845105 chr19:17845108 synonymous SNV . 0 24 hm5C_associated_SNPs_81286 0 0 1 0 1 MAP1S chr19:17845082 3'AG 17845082 Downstream 27bp
chr9 124535048 124535048 1 + C T SKCM 124535045 + 124535025 124535065 41 GCCAACGGTGGCAAGAGCCTCTCCATGGTGGACCTCCAGGA GCCAACGGTGGCAAGAGCCTCTCTATGGTGGACCTCCAGGA < 41bp 0.72854351578906 0.507683065308823 0.9616362 0.9315539 prediction 0.441720900960474 Functional Loss - DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124535045 chr9:124535048 synonymous SNV . 0 24 hm5C_associated_SNPs_81291 0 0 0 0 1 DAB2IP chr9:124534952 3'AG 124534952 Downstream 97bp
chr9 77286797 77286797 1 + G A SKCM 77286794 + 77286774 77286814 41 ATGTGATTCAGAAGAATCACCTGGATGATGAGACCTTGGCA ATGTGATTCAGAAGAATCACCTGAATGATGAGACCTTGGCA < 41bp 0.773227417239075 0.55237090248674 0.4839452 0.2098195 prediction 0.44171302950467 Functional Loss - RORB ENSG00000198963 CDS Human protein_coding chr9:77286794 chr9:77286797 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_81293 0 0 0 0 2 RORB chr9:77286705 3'AG 77286705 Downstream 93bp
chr9 77286797 77286797 1 + G A SKCM 77286794 + 77286774 77286814 41 ATGTGATTCAGAAGAATCACCTGGATGATGAGACCTTGGCA ATGTGATTCAGAAGAATCACCTGAATGATGAGACCTTGGCA < 41bp 0.773227417239075 0.55237090248674 0.4839452 0.2098195 prediction 0.44171302950467 Functional Loss - RORB ENSG00000198963 CDS Human protein_coding chr9:77286794 chr9:77286797 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_81293 0 0 0 0 2 RORB chr9:77286817 5'GT 77286817 Upstream 21bp
chr1 23240175 23240175 1 + C T rs574015572 23240173 + 23240153 23240193 41 CCAGCCACTCGCCAGGAGGCCACGGGCCACGGGAAGAACCA CCAGCCACTCGCCAGGAGGCCATGGGCCACGGGAAGAACCA < 41bp 0.720852177210822 0.468191536362811 0.44871822 0.37023592 prediction 0.441704354421643 Functional Loss - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23240173 chr1:23240175 nonsynonymous SNV 0.903 1 23 hm5C_associated_SNPs_81295 0 0 0 0 1 EPHB2 chr1:23240151 3'AG 23240151 Downstream 25bp
chr20 376920 376920 1 + G A rs61744723 376917 + 376897 376937 41 GATTCCCTGTGGGACAAGCACGCGTGCCCAGCCTACGTGGG GATTCCCTGTGGGACAAGCACGCATGCCCAGCCTACGTGGG < 41bp 0.720850785955314 0.472650899185288 0.3479672 0.08454591 prediction 0.441701571910628 Functional Loss - TRIB3 ENSG00000101255 CDS Human protein_coding chr20:376917 chr20:376920 synonymous SNV . 0 24 hm5C_associated_SNPs_81296 0 0 1 0 1 TRIB3 chr20:376842 3'AG 376842 Downstream 79bp
chr22 31008968 31008968 1 + C T COAD 31008966 + 31008946 31008986 41 ACTGTGAGTTTGTCAGGGGCCACAAGGGGGACAGGCTGGTC ACTGTGAGTTTGTCAGGGGCCATAAGGGGGACAGGCTGGTC < 41bp 0.852109877721484 0.631262010605023 0.9411481 0.9454224 prediction 0.441695734232923 Functional Loss - TCN2 ENSG00000185339 CDS Human protein_coding chr22:31008966 chr22:31008968 synonymous SNV . 0 23 hm5C_associated_SNPs_81297 0 0 0 0 1 TCN2 chr22:31009029 5'GT 31009029 Upstream 62bp
chr12 50484146 50484146 1 + C T rs61751610 50484144 + 50484124 50484164 41 CACATAAGCTCCAGGACCCTCACGAGCGGGAGTTTGTCATC CACATAAGCTCCAGGACCCTCATGAGCGGGAGTTTGTCATC < 41bp 0.867083751807626 0.646239834171634 0.09512922 0.023756683 prediction 0.441687835271985 Functional Loss - SMARCD1 ENSG00000066117 CDS Human protein_coding chr12:50484144 chr12:50484146 synonymous SNV . 0 23 hm5C_associated_SNPs_81301 0 0 1 0 1 SMARCD1 chr12:50484185 5'GT 50484185 Upstream 40bp
chr1 29442270 29442270 1 + G A UCEC 29442267 + 29442247 29442287 41 CACCCAGACATGTCAGTGACCAAGGTGGTCGTCCACCAGGA CACCCAGACATGTCAGTGACCAAAGTGGTCGTCCACCAGGA < 41bp 0.720839832494278 0.492629560203962 0.9041036 0.5243813 prediction 0.441679664988557 Functional Loss - EPB41 ENSG00000159023 CDS Human protein_coding chr1:29442267 chr1:29442270 synonymous SNV . 0 24 hm5C_associated_SNPs_81307 0 0 1 0 1 EPB41 chr1:29442211 3'AG 29442211 Downstream 60bp
chr7 108212299 108212299 1 + G T UCS 108212296 + 108212276 108212316 41 TCGGCATCAGAGCGCCAAATCAAGAAGGCCTTTCACAAGTT TCGGCATCAGAGCGCCAAATCAATAAGGCCTTTCACAAGTT < 41bp 0.926393218980643 0.705554160255236 0.6637164 0.27288485 prediction 0.441678117450814 Functional Loss - DNAJB9 ENSG00000128590 CDS Human protein_coding chr7:108212296 chr7:108212299 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_81309 0 0 1 0 1 DNAJB9 chr7:108212387 5'GT 108212387 Upstream 89bp
chr5 161116031 161116031 1 + T C UCEC 161116030 + 161116010 161116050 41 TTGGGGGGCCAACTGAGATTCTGAGTCTGAATAATTTGATG TTGGGGGGCCAACTGAGATTCCGAGTCTGAATAATTTGATG < 41bp 0.720838471427705 0.48705593140687 0.29334742 0.24511302 prediction 0.44167694285541 Functional Loss - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161116030 chr5:161116031 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_81312 0 0 0 0 1 GABRA6 chr5:161115955 3'AG 161115955 Downstream 77bp
chr7 56125714 56125714 1 + G A CESC 56125711 + 56125691 56125731 41 TCAGAGGGCTTGTTTTGGACCACGGAGCACGGCATCCTGAT TCAGAGGGCTTGTTTTGGACCACAGAGCACGGCATCCTGAT < 41bp 0.780100695275479 0.559265299250703 0.08076286 0.060210377 prediction 0.441670792049553 Functional Loss - CCT6A ENSG00000146731 CDS Human protein_coding chr7:56125711 chr7:56125714 nonsynonymous SNV 0.679 4 24 hm5C_associated_SNPs_81314 0 0 1 0 2 CCT6A chr7:56125686 3'AG 56125686 Downstream 29bp
chr7 56125714 56125714 1 + G A CESC 56125711 + 56125691 56125731 41 TCAGAGGGCTTGTTTTGGACCACGGAGCACGGCATCCTGAT TCAGAGGGCTTGTTTTGGACCACAGAGCACGGCATCCTGAT < 41bp 0.780100695275479 0.559265299250703 0.08076286 0.060210377 prediction 0.441670792049553 Functional Loss - CCT6A ENSG00000146731 CDS Human protein_coding chr7:56125711 chr7:56125714 nonsynonymous SNV 0.679 4 24 hm5C_associated_SNPs_81314 0 0 1 0 2 CCT6A chr7:56125796 5'GT 56125796 Upstream 83bp
chr6 3264466 3264466 1 + G A rs367666695 3264463 + 3264443 3264483 41 GGCTCGGAGGGAAGACTGGCCTGGCCTGTGAGTGTGGCGTA GGCTCGGAGGGAAGACTGGCCTGACCTGTGAGTGTGGCGTA < 41bp 0.797265614346423 0.576431815805168 0.26146472 0.121599525 prediction 0.44166759708251 Functional Loss - PSMG4 ENSG00000180822 CDS Human protein_coding chr6:3264463 chr6:3264466 stopgain 0.016 0 24 hm5C_associated_SNPs_81316 0 0 1 0 2 PSMG4 chr6:3264443 3'AG 3264443 Downstream 24bp
chr6 3264466 3264466 1 + G A rs367666695 3264463 + 3264443 3264483 41 GGCTCGGAGGGAAGACTGGCCTGGCCTGTGAGTGTGGCGTA GGCTCGGAGGGAAGACTGGCCTGACCTGTGAGTGTGGCGTA < 41bp 0.797265614346423 0.576431815805168 0.26146472 0.121599525 prediction 0.44166759708251 Functional Loss - PSMG4 ENSG00000180822 CDS Human protein_coding chr6:3264463 chr6:3264466 stopgain 0.016 0 24 hm5C_associated_SNPs_81316 0 0 1 0 2 PSMG4 chr6:3264559 5'GT 3264559 Upstream 94bp
chr14 93290946 93290946 1 + G T UCEC 93290944 + 93290924 93290964 41 ACAAAGAACACATTGCAAAGCAGAATTAAAGATCGAGACGA ACAAAGAACACATTGCAAAGCATAATTAAAGATCGAGACGA < 41bp 0.720831398398073 0.391665080976802 0.27439463 0.04549852 prediction 0.441662796796146 Functional Loss - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93290944 chr14:93290946 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_81317 0 0 1 0 2 GOLGA5 chr14:93290891 3'AG 93290891 Downstream 56bp
chr14 93290946 93290946 1 + G T UCEC 93290944 + 93290924 93290964 41 ACAAAGAACACATTGCAAAGCAGAATTAAAGATCGAGACGA ACAAAGAACACATTGCAAAGCATAATTAAAGATCGAGACGA < 41bp 0.720831398398073 0.391665080976802 0.27439463 0.04549852 prediction 0.441662796796146 Functional Loss - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93290944 chr14:93290946 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_81317 0 0 1 0 2 GOLGA5 chr14:93290989 5'GT 93290989 Upstream 44bp
chr12 101477520 101477520 1 + G A SKCM 101477517 + 101477497 101477537 41 AGAGCGGATGAATCCAATTTCTGGAAAGCCAGAACCTTATC AGAGCGGATGAATCCAATTTCTGAAAAGCCAGAACCTTATC < 41bp 0.728384724260842 0.507556294302047 0.15104744 0.11847675 prediction 0.441656859917589 Functional Loss - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101477517 chr12:101477520 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_81319 0 0 0 0 2 ANO4 chr12:101477456 3'AG 101477456 Downstream 65bp
chr12 101477520 101477520 1 + G A SKCM 101477517 + 101477497 101477537 41 AGAGCGGATGAATCCAATTTCTGGAAAGCCAGAACCTTATC AGAGCGGATGAATCCAATTTCTGAAAAGCCAGAACCTTATC < 41bp 0.728384724260842 0.507556294302047 0.15104744 0.11847675 prediction 0.441656859917589 Functional Loss - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101477517 chr12:101477520 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_81319 0 0 0 0 2 ANO4 chr12:101477596 5'GT 101477596 Upstream 77bp
chr20 35515872 35515872 1 + T C STAD 35515871 + 35515851 35515891 41 CACCCAGGTCTTTAAGTGGACTGGAAGCAACTCTTTCTTTG CACCCAGGTCTTTAAGTGGACCGGAAGCAACTCTTTCTTTG < 41bp 0.795708681643748 0.574884757190032 0.41410935 0.48089916 prediction 0.441647848907432 Functional Loss - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35515871 chr20:35515872 synonymous SNV . 0 22 hm5C_associated_SNPs_81323 0 0 0 0 2 TLDC2 chr20:35515858 3'AG 35515858 Downstream 15bp
chr20 35515872 35515872 1 + T C STAD 35515871 + 35515851 35515891 41 CACCCAGGTCTTTAAGTGGACTGGAAGCAACTCTTTCTTTG CACCCAGGTCTTTAAGTGGACCGGAAGCAACTCTTTCTTTG < 41bp 0.795708681643748 0.574884757190032 0.41410935 0.48089916 prediction 0.441647848907432 Functional Loss - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35515871 chr20:35515872 synonymous SNV . 0 22 hm5C_associated_SNPs_81323 0 0 0 0 2 TLDC2 chr20:35515931 5'GT 35515931 Upstream 60bp
chr2 173334104 173334104 1 + G A SKCM 173334101 + 173334081 173334121 41 GGAGCCCCGGGTACTTATAACTGGAAAGGTATGACCTTTGT GGAGCCCCGGGTACTTATAACTGAAAAGGTATGACCTTTGT < 41bp 0.734657271447516 0.513834597031682 0.21613556 0.13465148 prediction 0.441645348831669 Functional Loss - ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173334101 chr2:173334104 stopgain 0.999 1 24 hm5C_associated_SNPs_81324 0 0 1 0 1 ITGA6 chr2:173334108 5'GT 173334108 Upstream 5bp
chr11 119155954 119155954 1 + G C BRCA 119155953 + 119155933 119155973 41 TGCCAGTACCTCCCACACTTCGAGATCTTCCACCACCACCG TGCCAGTACCTCCCACACTTCCAGATCTTCCACCACCACCG < 41bp 0.72082225452063 0.393982152022166 0.20624813 0.11741474 prediction 0.44164450904126 Functional Loss - CBL ENSG00000110395 CDS Human protein_coding chr11:119155953 chr11:119155954 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_81325 0 0 1 0 1 CBL chr11:119155899 3'AG 119155899 Downstream 56bp
chr17 45369872 45369872 1 + C T COAD 45369870 + 45369850 45369890 41 AGCAGTGACTTTGGCAAGATCACGGGCAAGTACTGCGAGTG AGCAGTGACTTTGGCAAGATCATGGGCAAGTACTGCGAGTG < 41bp 0.841898815800382 0.621077719030464 0.75990295 0.5692283 prediction 0.441642193539835 Functional Loss - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45369870 chr17:45369872 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_81326 0 0 0 0 1 ITGB3 chr17:45369934 5'GT 45369934 Upstream 63bp
chr14 61346478 61346478 1 + T C STAD 61346477 + 61346457 61346497 41 TTCACAAGCTTGAAGAAGCTCTGTATGAATACCAGCCACTG TTCACAAGCTTGAAGAAGCTCCGTATGAATACCAGCCACTG < 41bp 0.720819860324935 0.463529426493295 0.09537321 0.14421064 prediction 0.44163972064987 Functional Loss - MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61346477 chr14:61346478 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_81327 0 0 1 0 1 MNAT1 chr14:61346553 5'GT 61346553 Upstream 76bp
chr2 71190384 71190384 1 + C T rs2072462 71190382 + 71190362 71190402 41 CCATCTACGAGCGGGCGGGCCGCGTGGAGGGTCGGGGAGGA CCATCTACGAGCGGGCGGGCCGTGTGGAGGGTCGGGGAGGA < 41bp 0.720814166666843 0.439938141411812 0.59393406 0.4961144 prediction 0.441628333333686 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71190382 chr2:71190384 synonymous SNV . 0 23 hm5C_associated_SNPs_81330 2 0 0 0 2 ATP6V1B1 chr2:71190292 3'AG 71190292 Downstream 93bp
chr2 71190384 71190384 1 + C T rs2072462 71190382 + 71190362 71190402 41 CCATCTACGAGCGGGCGGGCCGCGTGGAGGGTCGGGGAGGA CCATCTACGAGCGGGCGGGCCGTGTGGAGGGTCGGGGAGGA < 41bp 0.720814166666843 0.439938141411812 0.59393406 0.4961144 prediction 0.441628333333686 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71190382 chr2:71190384 synonymous SNV . 0 23 hm5C_associated_SNPs_81330 2 0 0 0 2 ATP6V1B1 chr2:71190442 5'GT 71190442 Upstream 59bp
chr2 71190385 71190385 1 + G A BLCA 71190382 + 71190362 71190402 41 CCATCTACGAGCGGGCGGGCCGCGTGGAGGGTCGGGGAGGA CCATCTACGAGCGGGCGGGCCGCATGGAGGGTCGGGGAGGA < 41bp 0.720814166666843 0.471373304644852 0.59393406 0.6668661 prediction 0.441628333333686 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71190382 chr2:71190385 nonsynonymous SNV 0.894 4 24 hm5C_associated_SNPs_81331 0 0 0 0 2 ATP6V1B1 chr2:71190292 3'AG 71190292 Downstream 94bp
chr2 71190385 71190385 1 + G A BLCA 71190382 + 71190362 71190402 41 CCATCTACGAGCGGGCGGGCCGCGTGGAGGGTCGGGGAGGA CCATCTACGAGCGGGCGGGCCGCATGGAGGGTCGGGGAGGA < 41bp 0.720814166666843 0.471373304644852 0.59393406 0.6668661 prediction 0.441628333333686 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71190382 chr2:71190385 nonsynonymous SNV 0.894 4 24 hm5C_associated_SNPs_81331 0 0 0 0 2 ATP6V1B1 chr2:71190442 5'GT 71190442 Upstream 58bp
chr10 72434362 72434362 1 + A T LUAD 72434358 + 72434338 72434378 41 GACTATGGTGTGACAGTGCCCTGCAGCACAGACTTTCGGGG GACTATGGTGTGACAGTGCCCTGCTGCACAGACTTTCGGGG < 41bp 0.720811722384902 0.384801376473055 0.12264001 0.05603099 prediction 0.441623444769804 Functional Loss - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72434358 chr10:72434362 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_81332 0 0 0 0 1 ADAMTS14 chr10:72434312 3'AG 72434312 Downstream 51bp
chr11 59857202 59857202 1 + G A SKCM 59857199 + 59857179 59857219 41 AAGTCTTGGAAATATCTCCCCAGGAAGTATCTTCAGGCAGA AAGTCTTGGAAATATCTCCCCAGAAAGTATCTTCAGGCAGA < 41bp 0.720810433315472 0.48349419084404 0.34870774 0.113238186 prediction 0.441620866630945 Functional Loss - MS4A2 ENSG00000149534 CDS Human protein_coding chr11:59857199 chr11:59857202 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_81334 0 0 0 0 1 MS4A2 chr11:59857294 5'GT 59857294 Upstream 93bp
chr18 72223625 72223625 1 + C T rs151254460 72223623 + 72223603 72223643 41 CTGCTGGAGCGCGGCATGTTCTCCTCACCCTCCCCGCCCCC CTGCTGGAGCGCGGCATGTTCTTCTCACCCTCCCCGCCCCC < 41bp 0.720809807420134 0.436872220487024 0.14160869 0.15569133 prediction 0.441619614840269 Functional Loss - CNDP1 ENSG00000150656 CDS Human protein_coding chr18:72223623 chr18:72223625 nonsynonymous SNV 0.025 2 23 hm5C_associated_SNPs_81335 0 0 0 0 2 CNDP1 chr18:72223573 3'AG 72223573 Downstream 53bp
chr18 72223625 72223625 1 + C T rs151254460 72223623 + 72223603 72223643 41 CTGCTGGAGCGCGGCATGTTCTCCTCACCCTCCCCGCCCCC CTGCTGGAGCGCGGCATGTTCTTCTCACCCTCCCCGCCCCC < 41bp 0.720809807420134 0.436872220487024 0.14160869 0.15569133 prediction 0.441619614840269 Functional Loss - CNDP1 ENSG00000150656 CDS Human protein_coding chr18:72223623 chr18:72223625 nonsynonymous SNV 0.025 2 23 hm5C_associated_SNPs_81335 0 0 0 0 2 CNDP1 chr18:72223701 5'GT 72223701 Upstream 77bp
chr4 1803650 1803650 1 + G A UCEC 1803647 + 1803627 1803667 41 AGCGACGTGGAGTTCCACTGCAAGGTGTACAGTGACGCACA AGCGACGTGGAGTTCCACTGCAAAGTGTACAGTGACGCACA < 41bp 0.794695980397747 0.573888298757636 0.87902623 0.35263824 prediction 0.441615363280222 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1803647 chr4:1803650 synonymous SNV . 0 24 hm5C_associated_SNPs_81336 0 0 1 0 3 FGFR3 chr4:1803562 3'AG 1803562 Downstream 89bp
chr4 1803650 1803650 1 + G A UCEC 1803647 + 1803627 1803667 41 AGCGACGTGGAGTTCCACTGCAAGGTGTACAGTGACGCACA AGCGACGTGGAGTTCCACTGCAAAGTGTACAGTGACGCACA < 41bp 0.794695980397747 0.573888298757636 0.87902623 0.35263824 prediction 0.441615363280222 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1803647 chr4:1803650 synonymous SNV . 0 24 hm5C_associated_SNPs_81336 0 0 1 0 3 FGFR3 chr4:1803650 5'GT 1803650 Upstream 1bp
chr4 1803650 1803650 1 + G A UCEC 1803647 + 1803627 1803667 41 AGCGACGTGGAGTTCCACTGCAAGGTGTACAGTGACGCACA AGCGACGTGGAGTTCCACTGCAAAGTGTACAGTGACGCACA < 41bp 0.794695980397747 0.573888298757636 0.87902623 0.35263824 prediction 0.441615363280222 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1803647 chr4:1803650 synonymous SNV . 0 24 hm5C_associated_SNPs_81336 0 0 1 0 3 FGFR3 chr4:1803713 5'GT 1803713 Upstream 64bp
chr21 47355207 47355207 1 + C T SKCM 47355204 + 47355184 47355224 41 CCGGCCAGCACTCATGAGCTCACCATTCCCAATGATGTGAG CCGGCCAGCACTCATGAGCTCACTATTCCCAATGATGTGAG < 41bp 0.735305412939415 0.514501821594953 0.038348496 0.039095044 prediction 0.441607182688925 Functional Loss - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47355204 chr21:47355207 synonymous SNV . 0 24 hm5C_associated_SNPs_81338 0 0 0 0 2 PCBP3 chr21:47355167 3'AG 47355167 Downstream 41bp
chr21 47355207 47355207 1 + C T SKCM 47355204 + 47355184 47355224 41 CCGGCCAGCACTCATGAGCTCACCATTCCCAATGATGTGAG CCGGCCAGCACTCATGAGCTCACTATTCCCAATGATGTGAG < 41bp 0.735305412939415 0.514501821594953 0.038348496 0.039095044 prediction 0.441607182688925 Functional Loss - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47355204 chr21:47355207 synonymous SNV . 0 24 hm5C_associated_SNPs_81338 0 0 0 0 2 PCBP3 chr21:47355219 5'GT 47355219 Upstream 13bp
chr1 3389659 3389659 1 + A T ESCA 3389655 + 3389635 3389675 41 CCTTCAGGTTCTTCGAGGACCTGGAGCAGCGGCACAAGGCC CCTTCAGGTTCTTCGAGGACCTGGTGCAGCGGCACAAGGCC < 41bp 0.889810615214124 0.669007699495808 0.3416748 0.2861284 prediction 0.441605831436632 Functional Loss - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3389655 chr1:3389659 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_81339 0 0 1 0 1 ARHGEF16 chr1:3389642 3'AG 3389642 Downstream 18bp
chr22 38273774 38273774 1 + C T PCPG 38273771 + 38273751 38273791 41 ATGAGAGCATTCACCTCCAGCTGCGGGAGAAATATGGGGAC ATGAGAGCATTCACCTCCAGCTGTGGGAGAAATATGGGGAC < 41bp 0.742428858605381 0.521639746656292 0.42710692 0.2947123 prediction 0.44157822389818 Functional Loss - EIF3L ENSG00000100129 CDS Human protein_coding chr22:38273771 chr22:38273774 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_81344 0 0 1 0 1 EIF3L chr22:38273681 3'AG 38273681 Downstream 94bp
chrX 128922022 128922022 1 + G T UCEC 128922019 + 128921999 128922039 41 CCCAGCTCCCCCGTGGTGAGCGAGAAGGAGTTTAATCTGGA CCCAGCTCCCCCGTGGTGAGCGATAAGGAGTTTAATCTGGA < 41bp 0.72078749984583 0.325984987035859 0.38287508 0.2746665 prediction 0.441574999691659 Functional Loss - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128922019 chrX:128922022 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_81345 0 0 0 0 1 SASH3 chrX:128922046 5'GT 128922046 Upstream 25bp
chr20 61467616 61467616 1 + G C COAD 61467612 + 61467592 61467632 41 CAGCGGTGTTCAGGGTGTCCCCGGGCCCCCCGGTCCTCTGG CAGCGGTGTTCAGGGTGTCCCCGGCCCCCCCGGTCCTCTGG < 41bp 0.720786197788954 0.429519973495984 0.9295006 0.9002305 prediction 0.441572395577908 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61467612 chr20:61467616 synonymous SNV . 0 25 hm5C_associated_SNPs_81346 0 0 1 0 2 COL9A3 chr20:61467539 3'AG 61467539 Downstream 78bp
chr20 61467616 61467616 1 + G C COAD 61467612 + 61467592 61467632 41 CAGCGGTGTTCAGGGTGTCCCCGGGCCCCCCGGTCCTCTGG CAGCGGTGTTCAGGGTGTCCCCGGCCCCCCCGGTCCTCTGG < 41bp 0.720786197788954 0.429519973495984 0.9295006 0.9002305 prediction 0.441572395577908 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61467612 chr20:61467616 synonymous SNV . 0 25 hm5C_associated_SNPs_81346 0 0 1 0 2 COL9A3 chr20:61467685 5'GT 61467685 Upstream 70bp
chr3 10261471 10261471 1 + G A UCEC 10261468 + 10261448 10261488 41 GAGATCATCCACAGCAACGTCAAGAGGTGAGAGAGGTGGGC GAGATCATCCACAGCAACGTCAAAAGGTGAGAGAGGTGGGC < 41bp 0.789469976227664 0.568689907198817 0.3843395 0.32770956 prediction 0.441560138057693 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10261468 chr3:10261471 synonymous SNV . 0 24 hm5C_associated_SNPs_81352 0 0 1 0 1 IRAK2 chr3:10261473 5'GT 10261473 Upstream 3bp
chr12 113596864 113596864 1 - C T UCEC 113596867 - 113596847 113596887 41 CCCCTGCAGGCCGAGTCCGCCCGGAACTCAAGACCAAGCAG CCCCTGCAGGCCGAGTCCGCCCGAAACTCAAGACCAAGCAG < 41bp 0.771808636662502 0.551033835393949 0.4750904 0.12364665 prediction 0.441549602537106 Functional Loss - DDX54 ENSG00000123064 CDS Human protein_coding chr12:113596867 chr12:113596864 nonsynonymous SNV 0.539 4 24 hm5C_associated_SNPs_81353 0 0 1 0 2 DDX54 chr12:113596914 3'AG 113596914 Downstream 51bp
chr12 113596864 113596864 1 - C T UCEC 113596867 - 113596847 113596887 41 CCCCTGCAGGCCGAGTCCGCCCGGAACTCAAGACCAAGCAG CCCCTGCAGGCCGAGTCCGCCCGAAACTCAAGACCAAGCAG < 41bp 0.771808636662502 0.551033835393949 0.4750904 0.12364665 prediction 0.441549602537106 Functional Loss - DDX54 ENSG00000123064 CDS Human protein_coding chr12:113596867 chr12:113596864 nonsynonymous SNV 0.539 4 24 hm5C_associated_SNPs_81353 0 0 1 0 2 DDX54 chr12:113596917 3'AG 113596917 Downstream 54bp
chr7 2740308 2740308 1 + G A BLCA 2740305 + 2740285 2740325 41 TCCTGAGCCGACCCGAGGCTCCCGAGGACTTCCAGACCTTC TCCTGAGCCGACCCGAGGCTCCCAAGGACTTCCAGACCTTC < 41bp 0.720771186179135 0.470023819177418 0.8648871 0.3738047 prediction 0.441542372358271 Functional Loss - AMZ1 ENSG00000174945 CDS Human protein_coding chr7:2740305 chr7:2740308 nonsynonymous SNV 0.624 4 24 hm5C_associated_SNPs_81354 0 0 0 0 1 AMZ1 chr7:2740389 5'GT 2740389 Upstream 82bp
chr8 134237661 134237661 1 + C T STAD 134237659 + 134237639 134237679 41 TGGGTGAGGTGGAGGCATGGCACAGGAACTGCATAGCCTAC TGGGTGAGGTGGAGGCATGGCATAGGAACTGCATAGCCTAC < 41bp 0.720767944005347 0.456413910072618 0.13282016 0.13827583 prediction 0.441535888010695 Functional Loss - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134237659 chr8:134237661 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_81358 0 0 0 0 1 WISP1 chr8:134237633 3'AG 134237633 Downstream 29bp
chr13 53237241 53237241 1 + T C COAD 53237240 + 53237220 53237260 41 TGTTTTAATAGGCTCAGAATCTGAGGTGGTAAGTCCAAAGT TGTTTTAATAGGCTCAGAATCCGAGGTGGTAAGTCCAAAGT < 41bp 0.720765951977735 0.498187812704747 0.5311715 0.8609891 prediction 0.44153190395547 Functional Loss - SUGT1 ENSG00000165416 CDS Human protein_coding chr13:53237240 chr13:53237241 synonymous SNV . 0 22 hm5C_associated_SNPs_81359 0 0 1 0 2 SUGT1 chr13:53237231 3'AG 53237231 Downstream 11bp
chr13 53237241 53237241 1 + T C COAD 53237240 + 53237220 53237260 41 TGTTTTAATAGGCTCAGAATCTGAGGTGGTAAGTCCAAAGT TGTTTTAATAGGCTCAGAATCCGAGGTGGTAAGTCCAAAGT < 41bp 0.720765951977735 0.498187812704747 0.5311715 0.8609891 prediction 0.44153190395547 Functional Loss - SUGT1 ENSG00000165416 CDS Human protein_coding chr13:53237240 chr13:53237241 synonymous SNV . 0 22 hm5C_associated_SNPs_81359 0 0 1 0 2 SUGT1 chr13:53237247 5'GT 53237247 Upstream 7bp
chr2 163213333 163213333 1 + G T LUSC 163213330 + 163213310 163213350 41 CTATGGGCAGCTCTTAATGCCTGGAAGGAAAACTTCATGAC CTATGGGCAGCTCTTAATGCCTGTAAGGAAAACTTCATGAC < 41bp 0.91876884935984 0.698005756582752 0.2666828 0.1409607 prediction 0.441526185554176 Functional Loss - GCA ENSG00000115271 CDS Human protein_coding chr2:163213330 chr2:163213333 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_81363 0 0 1 0 2 GCA chr2:163213268 3'AG 163213268 Downstream 66bp
chr2 163213333 163213333 1 + G T LUSC 163213330 + 163213310 163213350 41 CTATGGGCAGCTCTTAATGCCTGGAAGGAAAACTTCATGAC CTATGGGCAGCTCTTAATGCCTGTAAGGAAAACTTCATGAC < 41bp 0.91876884935984 0.698005756582752 0.2666828 0.1409607 prediction 0.441526185554176 Functional Loss - GCA ENSG00000115271 CDS Human protein_coding chr2:163213330 chr2:163213333 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_81363 0 0 1 0 2 GCA chr2:163213415 5'GT 163213415 Upstream 83bp
chr5 145435769 145435769 1 + G A SKCM 145435766 + 145435746 145435786 41 CTTCGGAAAGGGCGGAGCAGCATGAGAAAGAGTAAGTGGTG CTTCGGAAAGGGCGGAGCAGCATAAGAAAGAGTAAGTGGTG < 41bp 0.720763076045074 0.487962838882034 0.3144139 0.26341695 prediction 0.441526152090148 Functional Loss - SH3RF2 ENSG00000156463 CDS Human protein_coding chr5:145435766 chr5:145435769 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_81364 0 0 1 0 1 SH3RF2 chr5:145435794 5'GT 145435794 Upstream 26bp
chr5 178455128 178455128 1 + G A rs186960267 178455125 + 178455105 178455145 41 GAGTTCCCCAAGGCGCACATCTCGGTGAGTGACAGAGTAAT GAGTTCCCCAAGGCGCACATCTCAGTGAGTGACAGAGTAAT < 41bp 0.779139591547621 0.558377907966565 0.42978868 0.39865556 prediction 0.441523367162111 Functional Loss - ZNF879 ENSG00000234284 CDS Human protein_coding chr5:178455125 chr5:178455128 nonsynonymous SNV 0.065 2 24 hm5C_associated_SNPs_81366 0 0 0 0 2 ZNF879 chr5:178455033 3'AG 178455033 Downstream 96bp
chr5 178455128 178455128 1 + G A rs186960267 178455125 + 178455105 178455145 41 GAGTTCCCCAAGGCGCACATCTCGGTGAGTGACAGAGTAAT GAGTTCCCCAAGGCGCACATCTCAGTGAGTGACAGAGTAAT < 41bp 0.779139591547621 0.558377907966565 0.42978868 0.39865556 prediction 0.441523367162111 Functional Loss - ZNF879 ENSG00000234284 CDS Human protein_coding chr5:178455125 chr5:178455128 nonsynonymous SNV 0.065 2 24 hm5C_associated_SNPs_81366 0 0 0 0 2 ZNF879 chr5:178455128 5'GT 178455128 Upstream 1bp
chr6 36198215 36198215 1 + A C rs142886577 36198214 + 36198194 36198234 41 GCATTTCAGGCAGTGGCTTCCAAGGGACAAAGTCCTGCCCT GCATTTCAGGCAGTGGCTTCCCAGGGACAAAGTCCTGCCCT < 41bp 0.819335744342017 0.598574864044461 0.9288807 0.92056715 prediction 0.441521760595111 Functional Loss - BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36198214 chr6:36198215 synonymous SNV . 0 22 hm5C_associated_SNPs_81367 0 0 0 0 1 BRPF3 chr6:36198203 3'AG 36198203 Downstream 13bp
chr16 68349919 68349919 1 + G C LUAD 68349915 + 68349895 68349935 41 TGCAGTCGGGCCAATCCGACCACGGGGTCTGTGGAGTGGCT TGCAGTCGGGCCAATCCGACCACGCGGTCTGTGGAGTGGCT < 41bp 0.720760721925288 0.428839267192257 0.8788456 0.42095977 prediction 0.441521443850576 Functional Loss - PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68349915 chr16:68349919 nonsynonymous SNV 0.127 3 25 hm5C_associated_SNPs_81368 0 0 1 0 1 PRMT7 chr16:68349977 5'GT 68349977 Upstream 59bp
chr16 87245751 87245751 1 + C T rs147615403 87245749 + 87245729 87245769 41 GCGATGGGAAGGAGCCCACCCACGACTGTGGATGTTTAACC GCGATGGGAAGGAGCCCACCCATGACTGTGGATGTTTAACC < 41bp 0.762523768109091 0.541764317381274 0.10593963 0.14697579 prediction 0.441518901455634 Functional Loss - LOC101928708 ENSG00000261095 ncRNA_exonic Human lincRNA chr16:87245749 chr16:87245751 . . 0 23 hm5C_associated_SNPs_81370 0 0 0 0 1 LOC101928708 chr16:87245818 5'GT 87245818 Upstream 68bp
chr3 154802051 154802051 1 + C T COAD 154802049 + 154802029 154802069 41 ACTCCACTGGAGATCAGCCTCTCGGTCCTTGTCCTGCTCCT ACTCCACTGGAGATCAGCCTCTTGGTCCTTGTCCTGCTCCT < 41bp 0.848117427042569 0.627359451139959 0.16537097 0.113208264 prediction 0.44151595180522 Functional Loss - MME ENSG00000196549 CDS Human protein_coding chr3:154802049 chr3:154802051 nonsynonymous SNV 0.959 1 23 hm5C_associated_SNPs_81371 0 0 0 0 1 MME chr3:154802116 5'GT 154802116 Upstream 66bp
chr2 23865230 23865230 1 + G A rs559907813 23865227 + 23865207 23865247 41 GGCACAGGGCCATGGGTGACCACGGTGGCCGCCGGGAACCA GGCACAGGGCCATGGGTGACCACAGTGGCCGCCGGGAACCA < 41bp 0.797354944420238 0.576597745667011 0.655802 0.42191663 prediction 0.441514397506452 Functional Loss - KLHL29 ENSG00000119771 CDS Human protein_coding chr2:23865227 chr2:23865230 synonymous SNV . 0 24 hm5C_associated_SNPs_81372 0 0 0 0 1 KLHL29 chr2:23865208 3'AG 23865208 Downstream 23bp
chr8 38834180 38834180 1 + G T UCEC 38834177 + 38834157 38834197 41 CAGTGGATTGAGGTGGTGCTCCAGAATGGGGCCCGTTATGA CAGTGGATTGAGGTGGTGCTCCATAATGGGGCCCGTTATGA < 41bp 0.720746024740785 0.319923296202891 0.41811985 0.23869544 prediction 0.44149204948157 Functional Loss - HTRA4 ENSG00000169495 CDS Human protein_coding chr8:38834177 chr8:38834180 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_81378 0 0 0 0 1 HTRA4 chr8:38834258 5'GT 38834258 Upstream 79bp
chr21 44108053 44108053 1 + C T SKCM 44108051 + 44108031 44108071 41 ACGACCATCTCCCTGCTGACCACCGACGACGCCATGGTCTC ACGACCATCTCCCTGCTGACCATCGACGACGCCATGGTCTC < 41bp 0.720744052235013 0.478942330871704 0.21186075 0.37544307 prediction 0.441488104470027 Functional Loss - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44108051 chr21:44108053 nonsynonymous SNV 0.822 0 23 hm5C_associated_SNPs_81379 0 0 0 0 2 PDE9A chr21:44108027 3'AG 44108027 Downstream 27bp
chr21 44108053 44108053 1 + C T SKCM 44108051 + 44108031 44108071 41 ACGACCATCTCCCTGCTGACCACCGACGACGCCATGGTCTC ACGACCATCTCCCTGCTGACCATCGACGACGCCATGGTCTC < 41bp 0.720744052235013 0.478942330871704 0.21186075 0.37544307 prediction 0.441488104470027 Functional Loss - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44108051 chr21:44108053 nonsynonymous SNV 0.822 0 23 hm5C_associated_SNPs_81379 0 0 0 0 2 PDE9A chr21:44108104 5'GT 44108104 Upstream 52bp
chrX 152034484 152034484 1 + G T LUAD 152034482 + 152034462 152034502 41 CTCATCGAGGCAGCCAGGAACGGCAAGATGAAGTTCGTGAT CTCATCGAGGCAGCCAGGAACGTCAAGATGAAGTTCGTGAT < 41bp 0.907742407219559 0.686998666711345 0.74373823 0.24069008 prediction 0.441487481016428 Functional Loss - NSDHL ENSG00000147383 CDS Human protein_coding chrX:152034482 chrX:152034484 nonsynonymous SNV 0.880 5 23 hm5C_associated_SNPs_81381 0 0 1 0 1 NSDHL chrX:152034505 5'GT 152034505 Upstream 22bp
chr11 33682434 33682434 1 + C T SKCM 33682431 + 33682411 33682451 41 AATACGGTGCCAGCAGTGTTCGCCATCCCAGCTGCCAACAG AATACGGTGCCAGCAGTGTTCGCTATCCCAGCTGCCAACAG < 41bp 0.735646199901495 0.514905403597562 0.8489946 0.23368475 prediction 0.441481592607868 Functional Loss - KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33682431 chr11:33682434 synonymous SNV . 0 24 hm5C_associated_SNPs_81383 0 0 0 0 1 KIAA1549L chr11:33682409 3'AG 33682409 Downstream 26bp
chr19 36038271 36038271 1 + G T LUAD 36038269 + 36038249 36038289 41 TGGGCAGTTGGGCAGCTCTACTGGCCCGAGCAGTGGTAACG TGGGCAGTTGGGCAGCTCTACTTGCCCGAGCAGTGGTAACG < 41bp 0.72074020722969 0.376789522055347 0.5733873 0.25796103 prediction 0.441480414459379 Functional Loss - TMEM147 ENSG00000105677 CDS Human protein_coding chr19:36038269 chr19:36038271 synonymous SNV . 0 23 hm5C_associated_SNPs_81384 0 0 1 0 1 TMEM147 chr19:36038226 3'AG 36038226 Downstream 46bp
chr4 41259024 41259024 1 + G C CESC 41259023 + 41259003 41259043 41 AAGCCGATGGAGATCAACCCCGAGGTGAGCGCCAGGTGCAC AAGCCGATGGAGATCAACCCCCAGGTGAGCGCCAGGTGCAC < 41bp 0.870470952465979 0.64973155054643 0.8891537 0.755417 prediction 0.441478803839098 Functional Loss - UCHL1 ENSG00000154277 CDS Human protein_coding chr4:41259023 chr4:41259024 nonsynonymous SNV 0.994 0 22 hm5C_associated_SNPs_81385 0 0 1 0 1 UCHL1 chr4:41259026 5'GT 41259026 Upstream 3bp
chr3 9965687 9965687 1 + C T SKCM 9965685 + 9965665 9965705 41 GGTCCAGGGCCCCCCAAAACCCCGGTGGCACAAAAACCTGG GGTCCAGGGCCCCCCAAAACCCTGGTGGCACAAAAACCTGG < 41bp 0.79003381982455 0.569297346403363 0.8011339 0.68212736 prediction 0.441472946842375 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9965685 chr3:9965687 nonsynonymous SNV 0.285 0 23 hm5C_associated_SNPs_81386 0 0 1 0 1 IL17RC chr3:9965704 5'GT 9965704 Upstream 18bp
chr19 36236879 36236879 1 + G A BLCA 36236876 + 36236856 36236896 41 GAGGAGAAATTGAACCTGTGCCGGAAGTACTACCTGGGTAA GAGGAGAAATTGAACCTGTGCCGAAAGTACTACCTGGGTAA < 41bp 0.788437867179127 0.567706526343971 0.8759788 0.32372886 prediction 0.441462681670311 Functional Loss - PSENEN ENSG00000188223;ENSG00000205155 CDS Human other chr19:36236876 chr19:36236879 synonymous SNV . 0 24 hm5C_associated_SNPs_81389 0 0 1 0 1 PSENEN chr19:36236892 5'GT 36236892 Upstream 14bp
chr6 151907144 151907144 1 + C T BRCA 151907141 + 151907121 151907161 41 CAGAGAATATGTTGGAGACTCTTCAGGGTCAGCTGACACAC CAGAGAATATGTTGGAGACTCTTTAGGGTCAGCTGACACAC < 41bp 0.757637144725747 0.536906148604614 0.19170046 0.06476998 prediction 0.441461992242265 Functional Loss - CCDC170 ENSG00000120262 CDS Human protein_coding chr6:151907141 chr6:151907144 stopgain 1.000 1 24 hm5C_associated_SNPs_81390 0 0 0 0 1 CCDC170 chr6:151907224 5'GT 151907224 Upstream 81bp
chr19 5134027 5134027 1 + G A rs146720566 5134024 + 5134004 5134044 41 TTCAACGCAGCGGCTGCGCGCACGGAGCCCTACTGCGCCAT TTCAACGCAGCGGCTGCGCGCACAGAGCCCTACTGCGCCAT < 41bp 0.720730933847662 0.462049563237423 0.38461587 0.19925863 prediction 0.441461867695325 Functional Loss - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5134024 chr19:5134027 synonymous SNV . 0 24 hm5C_associated_SNPs_81391 0 0 0 0 1 KDM4B chr19:5134072 5'GT 5134072 Upstream 46bp
chr19 41630784 41630784 1 + G A UCEC 41630781 + 41630761 41630801 41 CCGCACCGCGTCACTAGGGACACGGCCTTTCGCGGCTTCCT CCGCACCGCGTCACTAGGGACACAGCCTTTCGCGGCTTCCT < 41bp 0.720724414672308 0.47579294081354 0.03143686 0.013472527 prediction 0.441448829344615 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41630781 chr19:41630784 synonymous SNV . 0 24 hm5C_associated_SNPs_81395 0 0 0 0 1 CYP2F1 chr19:41630811 5'GT 41630811 Upstream 28bp
chr8 38845473 38845473 1 + C T SKCM 38845471 + 38845451 38845491 41 TCAGCTCTGGATTGAGAGATCACGATGTAATTGTCAACATA TCAGCTCTGGATTGAGAGATCATGATGTAATTGTCAACATA < 41bp 0.72072339719993 0.45942347842111 0.42243454 0.34942493 prediction 0.44144679439986 Functional Loss - HTRA4 ENSG00000169495 CDS Human protein_coding chr8:38845471 chr8:38845473 synonymous SNV . 0 23 hm5C_associated_SNPs_81396 0 0 0 0 1 HTRA4 chr8:38845455 3'AG 38845455 Downstream 19bp
chr8 38845474 38845474 1 + G A UCEC 38845471 + 38845451 38845491 41 TCAGCTCTGGATTGAGAGATCACGATGTAATTGTCAACATA TCAGCTCTGGATTGAGAGATCACAATGTAATTGTCAACATA < 41bp 0.72072339719993 0.492135576883356 0.42243454 0.27628613 prediction 0.44144679439986 Functional Loss - HTRA4 ENSG00000169495 CDS Human protein_coding chr8:38845471 chr8:38845474 nonsynonymous SNV 0.943 5 24 hm5C_associated_SNPs_81397 0 0 0 0 1 HTRA4 chr8:38845455 3'AG 38845455 Downstream 20bp
chr10 99512859 99512859 1 + T C COAD 99512858 + 99512838 99512878 41 CCCTGCAGGACAACGGGTTCCTGAGCAAGAATGAGGTGCTG CCCTGCAGGACAACGGGTTCCCGAGCAAGAATGAGGTGCTG < 41bp 0.763802615152339 0.54308672091503 0.3466127 0.39834338 prediction 0.441431788474619 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99512858 chr10:99512859 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_81401 0 0 1 1 2 ZFYVE27 chr10:99512795 3'AG 99512795 Downstream 65bp
chr10 99512859 99512859 1 + T C COAD 99512858 + 99512838 99512878 41 CCCTGCAGGACAACGGGTTCCTGAGCAAGAATGAGGTGCTG CCCTGCAGGACAACGGGTTCCCGAGCAAGAATGAGGTGCTG < 41bp 0.763802615152339 0.54308672091503 0.3466127 0.39834338 prediction 0.441431788474619 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99512858 chr10:99512859 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_81401 0 0 1 1 2 ZFYVE27 chr10:99512939 5'GT 99512939 Upstream 81bp
chr9 130550917 130550917 1 + G A rs143718708 130550914 + 130550894 130550934 41 AGCCCCATCATGCAGGGCAACACGGAGCAGCACCAACTCGC AGCCCCATCATGCAGGGCAACACAGAGCAGCACCAACTCGC < 41bp 0.783963583195172 0.563247970702489 0.5365401 0.2006475 prediction 0.441431224985366 Functional Loss - CDK9 ENSG00000136807 CDS Human protein_coding chr9:130550914 chr9:130550917 synonymous SNV . 0 24 hm5C_associated_SNPs_81402 0 0 1 0 2 CDK9 chr9:130550823 3'AG 130550823 Downstream 95bp
chr9 130550917 130550917 1 + G A rs143718708 130550914 + 130550894 130550934 41 AGCCCCATCATGCAGGGCAACACGGAGCAGCACCAACTCGC AGCCCCATCATGCAGGGCAACACAGAGCAGCACCAACTCGC < 41bp 0.783963583195172 0.563247970702489 0.5365401 0.2006475 prediction 0.441431224985366 Functional Loss - CDK9 ENSG00000136807 CDS Human protein_coding chr9:130550914 chr9:130550917 synonymous SNV . 0 24 hm5C_associated_SNPs_81402 0 0 1 0 2 CDK9 chr9:130550971 5'GT 130550971 Upstream 55bp
chr19 50983882 50983882 1 + C T OV 50983880 + 50983860 50983900 41 TGTCGGACCAGCTGACCCTGCACGTGGATGTGGCCGGCAAC TGTCGGACCAGCTGACCCTGCATGTGGATGTGGCCGGCAAC < 41bp 0.720705174579223 0.465534729582706 0.3766973 0.37700218 prediction 0.441410349158445 Functional Loss - EMC10 ENSG00000161671 CDS Human protein_coding chr19:50983880 chr19:50983882 synonymous SNV . 0 23 hm5C_associated_SNPs_81407 0 0 1 0 1 EMC10 chr19:50983838 3'AG 50983838 Downstream 45bp
chr20 31672750 31672750 1 + G T LIHC 31672748 + 31672728 31672768 41 GGTGTCCGTGCGGCTCCTGCCCGGCGTGGGTGTCTACCTGA GGTGTCCGTGCGGCTCCTGCCCTGCGTGGGTGTCTACCTGA < 41bp 0.720704197721831 0.354909139738017 0.715171 0.020750046 prediction 0.441408395443662 Functional Loss - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31672748 chr20:31672750 nonsynonymous SNV 0.976 3 23 hm5C_associated_SNPs_81408 0 0 0 0 2 BPIFB4 chr20:31672698 3'AG 31672698 Downstream 53bp
chr20 31672750 31672750 1 + G T LIHC 31672748 + 31672728 31672768 41 GGTGTCCGTGCGGCTCCTGCCCGGCGTGGGTGTCTACCTGA GGTGTCCGTGCGGCTCCTGCCCTGCGTGGGTGTCTACCTGA < 41bp 0.720704197721831 0.354909139738017 0.715171 0.020750046 prediction 0.441408395443662 Functional Loss - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31672748 chr20:31672750 nonsynonymous SNV 0.976 3 23 hm5C_associated_SNPs_81408 0 0 0 0 2 BPIFB4 chr20:31672802 5'GT 31672802 Upstream 53bp
chr11 5624939 5624939 1 + G A STAD 5624936 + 5624916 5624956 41 ACCGTGGTCACCACACGTTCCTCGTGGAGGAGGTTGCCCAG ACCGTGGTCACCACACGTTCCTCATGGAGGAGGTTGCCCAG < 41bp 0.790590885894698 0.56988952110873 0.18974546 0.08414686 prediction 0.441402729571935 Functional Loss - TRIM6;TRIM6-TRIM34 ENSG00000121236;ENSG00000258588 CDS Human other chr11:5624936 chr11:5624939 nonsynonymous SNV 0.991 0 24 hm5C_associated_SNPs_81410 0 0 0 0 2 TRIM6;TRIM6-TRIM34 chr11:5624870 3'AG 5624870 Downstream 70bp
chr11 5624939 5624939 1 + G A STAD 5624936 + 5624916 5624956 41 ACCGTGGTCACCACACGTTCCTCGTGGAGGAGGTTGCCCAG ACCGTGGTCACCACACGTTCCTCATGGAGGAGGTTGCCCAG < 41bp 0.790590885894698 0.56988952110873 0.18974546 0.08414686 prediction 0.441402729571935 Functional Loss - TRIM6;TRIM6-TRIM34 ENSG00000121236;ENSG00000258588 CDS Human other chr11:5624936 chr11:5624939 nonsynonymous SNV 0.991 0 24 hm5C_associated_SNPs_81410 0 0 0 0 2 TRIM6;TRIM6-TRIM34 chr11:5624965 5'GT 5624965 Upstream 27bp
chr20 18523027 18523027 1 + G A STAD 18523024 + 18523004 18523044 41 CCAGCACCCAGAGACGCATCCGCGTGACCACCATCGCCCGA CCAGCACCCAGAGACGCATCCGCATGACCACCATCGCCCGA < 41bp 0.790631334627347 0.569934051422178 0.5338255 0.10021132 prediction 0.441394566410338 Functional Loss - SEC23B ENSG00000101310 CDS Human protein_coding chr20:18523024 chr20:18523027 nonsynonymous SNV 0.990 5 24 hm5C_associated_SNPs_81414 0 0 1 0 2 SEC23B chr20:18522940 3'AG 18522940 Downstream 88bp
chr20 18523027 18523027 1 + G A STAD 18523024 + 18523004 18523044 41 CCAGCACCCAGAGACGCATCCGCGTGACCACCATCGCCCGA CCAGCACCCAGAGACGCATCCGCATGACCACCATCGCCCGA < 41bp 0.790631334627347 0.569934051422178 0.5338255 0.10021132 prediction 0.441394566410338 Functional Loss - SEC23B ENSG00000101310 CDS Human protein_coding chr20:18523024 chr20:18523027 nonsynonymous SNV 0.990 5 24 hm5C_associated_SNPs_81414 0 0 1 0 2 SEC23B chr20:18523046 5'GT 18523046 Upstream 20bp
chr11 113802506 113802506 1 + G A SKCM 113802503 + 113802483 113802523 41 TGGAATGATGAATTTTTATCCTGGAACTCCAGCATGTTTGA TGGAATGATGAATTTTTATCCTGAAACTCCAGCATGTTTGA < 41bp 0.770714142169665 0.550020089938357 0.31302115 0.09336597 prediction 0.441388104462615 Functional Loss - HTR3B ENSG00000149305 CDS Human protein_coding chr11:113802503 chr11:113802506 stopgain 1.000 1 24 hm5C_associated_SNPs_81417 0 0 0 0 2 HTR3B chr11:113802480 3'AG 113802480 Downstream 27bp
chr11 113802506 113802506 1 + G A SKCM 113802503 + 113802483 113802523 41 TGGAATGATGAATTTTTATCCTGGAACTCCAGCATGTTTGA TGGAATGATGAATTTTTATCCTGAAACTCCAGCATGTTTGA < 41bp 0.770714142169665 0.550020089938357 0.31302115 0.09336597 prediction 0.441388104462615 Functional Loss - HTR3B ENSG00000149305 CDS Human protein_coding chr11:113802503 chr11:113802506 stopgain 1.000 1 24 hm5C_associated_SNPs_81417 0 0 0 0 2 HTR3B chr11:113802589 5'GT 113802589 Upstream 84bp
chr8 10389015 10389015 1 + G T OV 10389011 + 10388991 10389031 41 CACGCAGCCCGGCCCTGCCACATGGCGCGAATGCTGGGTGG CACGCAGCCCGGCCCTGCCACATGTCGCGAATGCTGGGTGG < 41bp 0.720915041066922 0.500221635241425 0.91046214 0.86773634 prediction 0.441386811650994 Functional Loss - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10389011 chr8:10389015 nonsynonymous SNV 0.014 4 25 hm5C_associated_SNPs_81418 0 0 0 0 1 PRSS55 chr8:10389055 5'GT 10389055 Upstream 41bp
chr16 84778335 84778335 1 + T C UCEC 84778334 + 84778314 84778354 41 GCTACAGTATTTCAAGCACACTGAACCCTCAGGCCCCTGAA GCTACAGTATTTCAAGCACACCGAACCCTCAGGCCCCTGAA < 41bp 0.720693309341847 0.47823355188259 0.094157964 0.00959155 prediction 0.441386618683695 Functional Loss - USP10 ENSG00000103194 CDS Human protein_coding chr16:84778334 chr16:84778335 stoploss 1.000 3 22 hm5C_associated_SNPs_81419 0 0 1 0 1 USP10 chr16:84778239 3'AG 84778239 Downstream 97bp
chr5 148579975 148579975 1 + G A rs76939309 148579972 + 148579952 148579992 41 ATGGCCAGCAGTAAGCCCATCAAGATTCGTGGACCAAGCCG ATGGCCAGCAGTAAGCCCATCAAAATTCGTGGACCAAGCCG < 41bp 0.803413179120289 0.582724431817117 0.2251668 0.19790882 prediction 0.441377494606344 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148579972 chr5:148579975 synonymous SNV . 0 24 hm5C_associated_SNPs_81420 0 0 0 0 2 ABLIM3 chr5:148579879 3'AG 148579879 Downstream 97bp
chr5 148579975 148579975 1 + G A rs76939309 148579972 + 148579952 148579992 41 ATGGCCAGCAGTAAGCCCATCAAGATTCGTGGACCAAGCCG ATGGCCAGCAGTAAGCCCATCAAAATTCGTGGACCAAGCCG < 41bp 0.803413179120289 0.582724431817117 0.2251668 0.19790882 prediction 0.441377494606344 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148579972 chr5:148579975 synonymous SNV . 0 24 hm5C_associated_SNPs_81420 0 0 0 0 2 ABLIM3 chr5:148579991 5'GT 148579991 Upstream 17bp
chr17 4789853 4789853 1 + C T UCEC 4789851 + 4789831 4789871 41 CCCTTCATCCGGGACCAGCCCACGGAGCGGCAGGTCCGCAT CCCTTCATCCGGGACCAGCCCATGGAGCGGCAGGTCCGCAT < 41bp 0.78915576024566 0.568470441468917 0.41581285 0.2516489 prediction 0.441370637553485 Functional Loss - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4789851 chr17:4789853 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_81423 0 0 1 0 2 MINK1 chr17:4789912 5'GT 4789912 Upstream 60bp
chr17 4789853 4789853 1 + C T UCEC 4789851 + 4789831 4789871 41 CCCTTCATCCGGGACCAGCCCACGGAGCGGCAGGTCCGCAT CCCTTCATCCGGGACCAGCCCATGGAGCGGCAGGTCCGCAT < 41bp 0.78915576024566 0.568470441468917 0.41581285 0.2516489 prediction 0.441370637553485 Functional Loss - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4789851 chr17:4789853 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_81423 0 0 1 0 2 MINK1 chr17:4789921 5'GT 4789921 Upstream 69bp
chr1 67845723 67845723 1 + G A CESC 67845720 + 67845700 67845740 41 TCCAATAAACAGCCTGCAGCCCCGAGTGACATATGTCCTGT TCCAATAAACAGCCTGCAGCCCCAAGTGACATATGTCCTGT < 41bp 0.720675563003753 0.485089217025752 0.040878683 0.119840205 prediction 0.441351126007507 Functional Loss - IL12RB2 ENSG00000081985 CDS Human protein_coding chr1:67845720 chr1:67845723 nonsynonymous SNV 0.795 0 24 hm5C_associated_SNPs_81426 0 0 0 0 2 IL12RB2 chr1:67845669 3'AG 67845669 Downstream 55bp
chr1 67845723 67845723 1 + G A CESC 67845720 + 67845700 67845740 41 TCCAATAAACAGCCTGCAGCCCCGAGTGACATATGTCCTGT TCCAATAAACAGCCTGCAGCCCCAAGTGACATATGTCCTGT < 41bp 0.720675563003753 0.485089217025752 0.040878683 0.119840205 prediction 0.441351126007507 Functional Loss - IL12RB2 ENSG00000081985 CDS Human protein_coding chr1:67845720 chr1:67845723 nonsynonymous SNV 0.795 0 24 hm5C_associated_SNPs_81426 0 0 0 0 2 IL12RB2 chr1:67845806 5'GT 67845806 Upstream 84bp
chr1 67845722 67845722 1 + C T UCEC 67845720 + 67845700 67845740 41 TCCAATAAACAGCCTGCAGCCCCGAGTGACATATGTCCTGT TCCAATAAACAGCCTGCAGCCCTGAGTGACATATGTCCTGT < 41bp 0.720675563003753 0.438827495493006 0.040878683 0.06057459 prediction 0.441351126007507 Functional Loss - IL12RB2 ENSG00000081985 CDS Human protein_coding chr1:67845720 chr1:67845722 stopgain 0.794 0 23 hm5C_associated_SNPs_81427 0 0 0 0 2 IL12RB2 chr1:67845669 3'AG 67845669 Downstream 54bp
chr1 67845722 67845722 1 + C T UCEC 67845720 + 67845700 67845740 41 TCCAATAAACAGCCTGCAGCCCCGAGTGACATATGTCCTGT TCCAATAAACAGCCTGCAGCCCTGAGTGACATATGTCCTGT < 41bp 0.720675563003753 0.438827495493006 0.040878683 0.06057459 prediction 0.441351126007507 Functional Loss - IL12RB2 ENSG00000081985 CDS Human protein_coding chr1:67845720 chr1:67845722 stopgain 0.794 0 23 hm5C_associated_SNPs_81427 0 0 0 0 2 IL12RB2 chr1:67845806 5'GT 67845806 Upstream 85bp
chr14 103566903 103566903 1 + A C rs568427314 103566902 + 103566882 103566922 41 GGGTCATGAATGGTGTCAGCCAGCAGGCATCCACTGGGGCA GGGTCATGAATGGTGTCAGCCCGCAGGCATCCACTGGGGCA < 41bp 0.809683554837885 0.589008478708752 0.7268427 0.527171 prediction 0.441350152258266 Functional Loss - EXOC3L4 ENSG00000205436 CDS Human protein_coding chr14:103566902 chr14:103566903 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_81429 0 0 0 0 1 EXOC3L4 chr14:103566950 5'GT 103566950 Upstream 48bp
chr9 117087125 117087125 1 + C T OV 117087122 + 117087102 117087142 41 ATCCTCAGGGACACCAAGACCTACATGCTTGCTTTTGACGT ATCCTCAGGGACACCAAGACCTATATGCTTGCTTTTGACGT < 41bp 0.720671336742291 0.499898193960935 0.8924295 0.3446964 prediction 0.441342673484583 Functional Loss - ORM1 ENSG00000229314 CDS Human protein_coding chr9:117087122 chr9:117087125 synonymous SNV . 0 24 hm5C_associated_SNPs_81430 0 0 1 0 2 ORM1 chr9:117087070 3'AG 117087070 Downstream 56bp
chr9 117087125 117087125 1 + C T OV 117087122 + 117087102 117087142 41 ATCCTCAGGGACACCAAGACCTACATGCTTGCTTTTGACGT ATCCTCAGGGACACCAAGACCTATATGCTTGCTTTTGACGT < 41bp 0.720671336742291 0.499898193960935 0.8924295 0.3446964 prediction 0.441342673484583 Functional Loss - ORM1 ENSG00000229314 CDS Human protein_coding chr9:117087122 chr9:117087125 synonymous SNV . 0 24 hm5C_associated_SNPs_81430 0 0 1 0 2 ORM1 chr9:117087177 5'GT 117087177 Upstream 53bp
chr1 198668740 198668740 1 + C T LUAD 198668738 + 198668718 198668758 41 CCTTCCCACGCACGCAGACTCGCAGACGCCCTCTGCTGGAA CCTTCCCACGCACGCAGACTCGTAGACGCCCTCTGCTGGAA < 41bp 0.720669351040619 0.458753406914027 0.8066882 0.84635234 prediction 0.441338702081238 Functional Loss - PTPRC ENSG00000081237 CDS Human protein_coding chr1:198668738 chr1:198668740 stopgain 0.246 0 23 hm5C_associated_SNPs_81431 0 0 0 0 2 PTPRC chr1:198668693 3'AG 198668693 Downstream 48bp
chr1 198668740 198668740 1 + C T LUAD 198668738 + 198668718 198668758 41 CCTTCCCACGCACGCAGACTCGCAGACGCCCTCTGCTGGAA CCTTCCCACGCACGCAGACTCGTAGACGCCCTCTGCTGGAA < 41bp 0.720669351040619 0.458753406914027 0.8066882 0.84635234 prediction 0.441338702081238 Functional Loss - PTPRC ENSG00000081237 CDS Human protein_coding chr1:198668738 chr1:198668740 stopgain 0.246 0 23 hm5C_associated_SNPs_81431 0 0 0 0 2 PTPRC chr1:198668833 5'GT 198668833 Upstream 94bp
chr7 49842321 49842321 1 + G A GBM 49842318 + 49842298 49842338 41 GTGTTTCAGGTGTCTCCATGCGAGAGGTGTCGCTGTGAAGC GTGTTTCAGGTGTCTCCATGCGAAAGGTGTCGCTGTGAAGC < 41bp 0.789279840143405 0.568615788352354 0.959098 0.7765195 prediction 0.441328103582102 Functional Loss - VWC2 ENSG00000188730 CDS Human protein_coding chr7:49842318 chr7:49842321 synonymous SNV . 0 24 hm5C_associated_SNPs_81435 0 0 0 0 1 VWC2 chr7:49842307 3'AG 49842307 Downstream 15bp
chr21 43838679 43838679 1 + C T BLCA 43838677 + 43838657 43838697 41 GGCTTCCTGCCGGAAAACTACACGGATCGAGCCAGTGAGTC GGCTTCCTGCCGGAAAACTACATGGATCGAGCCAGTGAGTC < 41bp 0.82732924059716 0.606666422860874 0.24997386 0.1743061 prediction 0.441325635472572 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43838677 chr21:43838679 nonsynonymous SNV 0.629 3 23 hm5C_associated_SNPs_81437 0 0 0 1 1 UBASH3A chr21:43838718 5'GT 43838718 Upstream 40bp
chr19 39871358 39871358 1 + C T CESC 39871356 + 39871336 39871376 41 CGGATGGGCCTCCTGAGCCCCTCGGGCATTGGGGGTGTCTC CGGATGGGCCTCCTGAGCCCCTTGGGCATTGGGGGTGTCTC < 41bp 0.825496512040327 0.604836224433313 0.2949893 0.077973485 prediction 0.441320575214029 Functional Loss - SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39871356 chr19:39871358 nonsynonymous SNV 0.785 1 23 hm5C_associated_SNPs_81438 0 0 1 0 1 SAMD4B chr19:39871425 5'GT 39871425 Upstream 68bp
chrX 65390489 65390489 1 + G A UCEC 65390486 + 65390466 65390506 41 TCAACTGACTGATGGAGCCACTCGAGTCTACTACCTGGGCA TCAACTGACTGATGGAGCCACTCAAGTCTACTACCTGGGCA < 41bp 0.720658811049197 0.481239899443222 0.86264133 0.83374524 prediction 0.441317622098394 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65390486 chrX:65390489 nonsynonymous SNV 0.856 5 24 hm5C_associated_SNPs_81441 0 0 0 0 2 HEPH chrX:65390400 3'AG 65390400 Downstream 90bp
chrX 65390489 65390489 1 + G A UCEC 65390486 + 65390466 65390506 41 TCAACTGACTGATGGAGCCACTCGAGTCTACTACCTGGGCA TCAACTGACTGATGGAGCCACTCAAGTCTACTACCTGGGCA < 41bp 0.720658811049197 0.481239899443222 0.86264133 0.83374524 prediction 0.441317622098394 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65390486 chrX:65390489 nonsynonymous SNV 0.856 5 24 hm5C_associated_SNPs_81441 0 0 0 0 2 HEPH chrX:65390579 5'GT 65390579 Upstream 91bp
chr10 99378850 99378850 1 + G A rs577417463 99378847 + 99378827 99378867 41 ATCCCAGCACTTGGGGAGGCCGAGGTGGGCAGATCACCTGA ATCCCAGCACTTGGGGAGGCCGAAGTGGGCAGATCACCTGA < 41bp 0.764387802770738 0.543729344883499 0.9184556 0.9050645 prediction 0.441316915774479 Functional Loss - MORN4 ENSG00000155252;ENSG00000171160;ENSG00000249967 intronic Human other chr10:99378847 chr10:99378850 . . 0 24 hm5C_associated_SNPs_81442 0 0 0 0 1 MORN4 chr10:99378850 5'GT 99378850 Upstream 1bp
chr19 35761708 35761708 1 + C T LUAD 35761705 + 35761685 35761725 41 CCCCCGGACACACCCTTACTCTCCGTATGTGCAGGGGACAC CCCCCGGACACACCCTTACTCTCTGTATGTGCAGGGGACAC < 41bp 0.731513860588904 0.510856585653414 0.23523632 0.04381022 prediction 0.44131454987098 Functional Loss - USF2 ENSG00000105698 CDS Human protein_coding chr19:35761705 chr19:35761708 nonsynonymous SNV 0.982 1 24 hm5C_associated_SNPs_81443 0 0 1 0 3 USF2 chr19:35761621 3'AG 35761621 Downstream 88bp
chr19 35761708 35761708 1 + C T LUAD 35761705 + 35761685 35761725 41 CCCCCGGACACACCCTTACTCTCCGTATGTGCAGGGGACAC CCCCCGGACACACCCTTACTCTCTGTATGTGCAGGGGACAC < 41bp 0.731513860588904 0.510856585653414 0.23523632 0.04381022 prediction 0.44131454987098 Functional Loss - USF2 ENSG00000105698 CDS Human protein_coding chr19:35761705 chr19:35761708 nonsynonymous SNV 0.982 1 24 hm5C_associated_SNPs_81443 0 0 1 0 3 USF2 chr19:35761662 3'AG 35761662 Downstream 47bp
chr19 35761708 35761708 1 + C T LUAD 35761705 + 35761685 35761725 41 CCCCCGGACACACCCTTACTCTCCGTATGTGCAGGGGACAC CCCCCGGACACACCCTTACTCTCTGTATGTGCAGGGGACAC < 41bp 0.731513860588904 0.510856585653414 0.23523632 0.04381022 prediction 0.44131454987098 Functional Loss - USF2 ENSG00000105698 CDS Human protein_coding chr19:35761705 chr19:35761708 nonsynonymous SNV 0.982 1 24 hm5C_associated_SNPs_81443 0 0 1 0 3 USF2 chr19:35761708 5'GT 35761708 Upstream 1bp
chr21 43708321 43708321 1 + G A HNSC 43708318 + 43708298 43708338 41 TCCCCTCTTGCGTGTGTCCTCAGGACTCCTCGTCCATGGAA TCCCCTCTTGCGTGTGTCCTCAGAACTCCTCGTCCATGGAA < 41bp 0.766839280487185 0.54618652407476 0.9267252 0.8715786 prediction 0.44130551282485 Functional Loss - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43708318 chr21:43708321 nonsynonymous SNV 0.342 0 24 hm5C_associated_SNPs_81449 0 0 0 0 1 ABCG1 chr21:43708321 3'AG 43708321 Downstream 1bp
chr16 84229512 84229512 1 + G C HNSC 84229508 + 84229488 84229528 41 GGGCAGCTGAAGCCTGTGTGCTACGTGGCGCCCTCGCTCTG GGGCAGCTGAAGCCTGTGTGCTACCTGGCGCCCTCGCTCTG < 41bp 0.720650787260363 0.429620727302476 0.14517447 0.11134994 prediction 0.441301574520726 Functional Loss - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84229508 chr16:84229512 nonsynonymous SNV 0.693 1 25 hm5C_associated_SNPs_81451 0 0 0 0 1 ADAD2 chr16:84229421 3'AG 84229421 Downstream 92bp
chr18 32455326 32455326 1 + G T UCEC 32455324 + 32455304 32455344 41 CACGCCGCAGGACTCCCTCACAGGAGTAGGGGGAGATGTAC CACGCCGCAGGACTCCCTCACATGAGTAGGGGGAGATGTAC < 41bp 0.858984364641931 0.638341440524267 0.90304065 0.5598148 prediction 0.441285848235327 Functional Loss - DTNA ENSG00000134769 CDS Human protein_coding chr18:32455324 chr18:32455326 stopgain 0.974 1 23 hm5C_associated_SNPs_81454 0 0 0 0 1 DTNA chr18:32455362 5'GT 32455362 Upstream 37bp
chr5 126860282 126860282 1 + G A DLBC 126860279 + 126860259 126860299 41 CCATGGAGTCCTTCCCACCACTCGCATACTCTACTCCTCAG CCATGGAGTCCTTCCCACCACTCACATACTCTACTCCTCAG < 41bp 0.720634234916845 0.484823489276638 0.008094728 0.0027551055 prediction 0.44126846983369 Functional Loss - PRRC1 ENSG00000164244 CDS Human protein_coding chr5:126860279 chr5:126860282 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_81459 0 0 1 0 1 PRRC1 chr5:126860223 3'AG 126860223 Downstream 60bp
chrX 30254076 30254076 1 + G C LUSC 30254075 + 30254055 30254095 41 AGAAGAGTACGCTCCATGCACGTGAGAAACGCCAGCAGACC AGAAGAGTACGCTCCATGCACCTGAGAAACGCCAGCAGACC < 41bp 0.882263027604909 0.661630809098452 0.7432546 0.4113349 prediction 0.441264437012913 Functional Loss - MAGEB3 ENSG00000198798 CDS Human protein_coding chrX:30254075 chrX:30254076 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_81461 0 0 0 0 1 MAGEB3 chrX:30253981 3'AG 30253981 Downstream 96bp
chr12 132404023 132404023 1 + G A STAD 132404020 + 132404000 132404040 41 CTGCCTGCCGCCCCCAGCTTCGCGGAACAGCTGGTGCTGTA CTGCCTGCCGCCCCCAGCTTCGCAGAACAGCTGGTGCTGTA < 41bp 0.784758263642693 0.564126469403603 0.8368999 0.7875869 prediction 0.44126358847818 Functional Loss - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132404020 chr12:132404023 synonymous SNV . 0 24 hm5C_associated_SNPs_81462 0 0 1 0 1 ULK1 chr12:132404017 3'AG 132404017 Downstream 7bp
chr1 154247925 154247925 1 + A T SKCM 154247921 + 154247901 154247941 41 TGAGGGCCGGACAGAGACTACAGTAACCCGACACGAAGCAG TGAGGGCCGGACAGAGACTACAGTTACCCGACACGAAGCAG < 41bp 0.720626630204027 0.393190705384443 0.24487731 0.2656079 prediction 0.441253260408054 Functional Loss - HAX1 ENSG00000143575 CDS Human protein_coding chr1:154247921 chr1:154247925 synonymous SNV . 0 25 hm5C_associated_SNPs_81463 0 0 1 0 2 HAX1 chr1:154247869 3'AG 154247869 Downstream 57bp
chr1 154247925 154247925 1 + A T SKCM 154247921 + 154247901 154247941 41 TGAGGGCCGGACAGAGACTACAGTAACCCGACACGAAGCAG TGAGGGCCGGACAGAGACTACAGTTACCCGACACGAAGCAG < 41bp 0.720626630204027 0.393190705384443 0.24487731 0.2656079 prediction 0.441253260408054 Functional Loss - HAX1 ENSG00000143575 CDS Human protein_coding chr1:154247921 chr1:154247925 synonymous SNV . 0 25 hm5C_associated_SNPs_81463 0 0 1 0 2 HAX1 chr1:154247959 5'GT 154247959 Upstream 35bp
chr5 157102158 157102158 1 + C T UCEC 157102156 + 157102136 157102176 41 TTTACCCAAGAGCCATTTATCTCGGGTGATTATTCATGATA TTTACCCAAGAGCCATTTATCTTGGGTGATTATTCATGATA < 41bp 0.851719397371548 0.631093105579502 0.64482296 0.502008 prediction 0.441252583584091 Functional Loss - C5orf52 ENSG00000187658 CDS Human protein_coding chr5:157102156 chr5:157102158 nonsynonymous SNV 0.857 1 23 hm5C_associated_SNPs_81464 0 0 0 0 2 C5orf52 chr5:157102100 3'AG 157102100 Downstream 59bp
chr5 157102158 157102158 1 + C T UCEC 157102156 + 157102136 157102176 41 TTTACCCAAGAGCCATTTATCTCGGGTGATTATTCATGATA TTTACCCAAGAGCCATTTATCTTGGGTGATTATTCATGATA < 41bp 0.851719397371548 0.631093105579502 0.64482296 0.502008 prediction 0.441252583584091 Functional Loss - C5orf52 ENSG00000187658 CDS Human protein_coding chr5:157102156 chr5:157102158 nonsynonymous SNV 0.857 1 23 hm5C_associated_SNPs_81464 0 0 0 0 2 C5orf52 chr5:157102208 5'GT 157102208 Upstream 51bp
chr16 67173918 67173918 1 + G A HNSC 67173915 + 67173895 67173935 41 CCTGGCCTATTAGCAGATGCCAAGATGCGGGTATTTGAACG CCTGGCCTATTAGCAGATGCCAAAATGCGGGTATTTGAACG < 41bp 0.76068410792832 0.540058498117833 0.31888554 0.35441738 prediction 0.441251219620973 Functional Loss - C16orf70 ENSG00000125149 CDS Human protein_coding chr16:67173915 chr16:67173918 synonymous SNV . 0 24 hm5C_associated_SNPs_81465 0 0 1 0 1 C16orf70 chr16:67173887 3'AG 67173887 Downstream 32bp
chr19 17835910 17835910 1 + G T LUSC 17835907 + 17835887 17835927 41 TCACAAGCTACTGGTGTTGGCTGGGCCCTGCCTGGAGGAGA TCACAAGCTACTGGTGTTGGCTGTGCCCTGCCTGGAGGAGA < 41bp 0.720624195067073 0.315970794420793 0.7882474 0.2708797 prediction 0.441248390134147 Functional Loss - MAP1S ENSG00000130479 CDS Human protein_coding chr19:17835907 chr19:17835910 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_81466 0 0 1 0 2 MAP1S chr19:17835858 3'AG 17835858 Downstream 53bp
chr19 17835910 17835910 1 + G T LUSC 17835907 + 17835887 17835927 41 TCACAAGCTACTGGTGTTGGCTGGGCCCTGCCTGGAGGAGA TCACAAGCTACTGGTGTTGGCTGTGCCCTGCCTGGAGGAGA < 41bp 0.720624195067073 0.315970794420793 0.7882474 0.2708797 prediction 0.441248390134147 Functional Loss - MAP1S ENSG00000130479 CDS Human protein_coding chr19:17835907 chr19:17835910 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_81466 0 0 1 0 2 MAP1S chr19:17835998 5'GT 17835998 Upstream 89bp
chr16 57171150 57171150 1 + G A UCEC 57171147 + 57171127 57171167 41 ATTTCTCCCCCATCGTCAACCACGTGGCCCGGTTTGCGGCC ATTTCTCCCCCATCGTCAACCACATGGCCCGGTTTGCGGCC < 41bp 0.720623717658664 0.468947190644015 0.17234516 0.10823619 prediction 0.441247435317328 Functional Loss - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57171147 chr16:57171150 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_81467 0 0 1 0 2 CPNE2 chr16:57171061 3'AG 57171061 Downstream 90bp
chr16 57171150 57171150 1 + G A UCEC 57171147 + 57171127 57171167 41 ATTTCTCCCCCATCGTCAACCACGTGGCCCGGTTTGCGGCC ATTTCTCCCCCATCGTCAACCACATGGCCCGGTTTGCGGCC < 41bp 0.720623717658664 0.468947190644015 0.17234516 0.10823619 prediction 0.441247435317328 Functional Loss - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57171147 chr16:57171150 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_81467 0 0 1 0 2 CPNE2 chr16:57171194 5'GT 57171194 Upstream 45bp
chr7 73770893 73770893 1 + C T UCEC 73770890 + 73770870 73770910 41 ACCCACAGTCCCAGCAGTTCCTCCATCAGCTCCGTCAGCTC ACCCACAGTCCCAGCAGTTCCTCTATCAGCTCCGTCAGCTC < 41bp 0.743277889914507 0.522655749785773 0.9755993 0.96022063 prediction 0.44124428025747 Functional Loss - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73770890 chr7:73770893 synonymous SNV . 0 24 hm5C_associated_SNPs_81468 0 0 0 0 1 CLIP2 chr7:73770953 5'GT 73770953 Upstream 61bp
chr11 65686980 65686980 1 + G T COAD 65686977 + 65686957 65686997 41 CGAGAGAGGCCCCGAGATGCCGAGCAAGAAGAAGAAGTACA CGAGAGAGGCCCCGAGATGCCGATCAAGAAGAAGAAGTACA < 41bp 0.720621940579445 0.343247883527897 0.66705054 0.3247256 prediction 0.441243881158891 Functional Loss - DRAP1 ENSG00000175550 CDS Human protein_coding chr11:65686977 chr11:65686980 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_81469 0 0 1 0 1 DRAP1 chr11:65687014 5'GT 65687014 Upstream 35bp
chr16 84879423 84879423 1 + C T rs150996650 84879420 + 84879400 84879440 41 TGACGAACTGGAGAAGTCTGCTGCAGCGTGGGCCAGTCAGT TGACGAACTGGAGAAGTCTGCTGTAGCGTGGGCCAGTCAGT < 41bp 0.732450482037321 0.511832229307582 0.3734119 0.18907976 prediction 0.441236505459478 Functional Loss - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84879420 chr16:84879423 nonsynonymous SNV 0.011 0 24 hm5C_associated_SNPs_81471 0 0 0 0 2 CRISPLD2 chr16:84879392 3'AG 84879392 Downstream 32bp
chr16 84879423 84879423 1 + C T rs150996650 84879420 + 84879400 84879440 41 TGACGAACTGGAGAAGTCTGCTGCAGCGTGGGCCAGTCAGT TGACGAACTGGAGAAGTCTGCTGTAGCGTGGGCCAGTCAGT < 41bp 0.732450482037321 0.511832229307582 0.3734119 0.18907976 prediction 0.441236505459478 Functional Loss - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84879420 chr16:84879423 nonsynonymous SNV 0.011 0 24 hm5C_associated_SNPs_81471 0 0 0 0 2 CRISPLD2 chr16:84879510 5'GT 84879510 Upstream 88bp
chr15 68061972 68061972 1 + G A ESCA 68061969 + 68061949 68061989 41 GTCCTTCCAGTTGGAGAGTTCTCGGAGCCATTTGTACATTT GTCCTTCCAGTTGGAGAGTTCTCAGAGCCATTTGTACATTT < 41bp 0.720613677056336 0.485952540251184 0.38922495 0.05218157 prediction 0.441227354112671 Functional Loss - MAP2K5 ENSG00000137764 CDS Human protein_coding chr15:68061969 chr15:68061972 synonymous SNV . 0 24 hm5C_associated_SNPs_81476 0 0 1 0 2 MAP2K5 chr15:68061940 3'AG 68061940 Downstream 33bp
chr15 68061972 68061972 1 + G A ESCA 68061969 + 68061949 68061989 41 GTCCTTCCAGTTGGAGAGTTCTCGGAGCCATTTGTACATTT GTCCTTCCAGTTGGAGAGTTCTCAGAGCCATTTGTACATTT < 41bp 0.720613677056336 0.485952540251184 0.38922495 0.05218157 prediction 0.441227354112671 Functional Loss - MAP2K5 ENSG00000137764 CDS Human protein_coding chr15:68061969 chr15:68061972 synonymous SNV . 0 24 hm5C_associated_SNPs_81476 0 0 1 0 2 MAP2K5 chr15:68062001 5'GT 68062001 Upstream 30bp
chr2 120020707 120020707 1 + G A LUSC 120020704 + 120020684 120020724 41 TACGGCTGGACCCGCGCCTTCGAGGAGAGCCGCTACAAGTT TACGGCTGGACCCGCGCCTTCGAAGAGAGCCGCTACAAGTT < 41bp 0.795827971712036 0.575215317914415 0.93495727 0.86051655 prediction 0.441225307595241 Functional Loss - STEAP3 ENSG00000115107 CDS Human protein_coding chr2:120020704 chr2:120020707 synonymous SNV . 0 24 hm5C_associated_SNPs_81478 0 0 1 0 1 STEAP3 chr2:120020633 3'AG 120020633 Downstream 75bp
chr11 55029750 55029750 1 + C T COAD 55029748 + 55029728 55029768 41 AGTACTTAACAGAATTATGTCTCGAAGAATCATTGTGGGAA AGTACTTAACAGAATTATGTCTTGAAGAATCATTGTGGGAA < 41bp 0.814277043547894 0.593665885067609 0.32133114 0.09983879 prediction 0.441222316960569 Functional Loss - TRIM48 ENSG00000150244 CDS Human protein_coding chr11:55029748 chr11:55029750 stopgain 0.004 0 23 hm5C_associated_SNPs_81480 0 0 0 0 1 TRIM48 chr11:55029787 5'GT 55029787 Upstream 38bp
chr7 76140331 76140331 1 + C T BLCA 76140329 + 76140309 76140349 41 GTCTTCGATGGGCTTGCCAGCGCCAGCGATACCGTCTGGCT GTCTTCGATGGGCTTGCCAGCGTCAGCGATACCGTCTGGCT < 41bp 0.808388398794364 0.587777989526971 0.7817564 0.42632097 prediction 0.441220818534785 Functional Loss - UPK3B ENSG00000243566 CDS Human protein_coding chr7:76140329 chr7:76140331 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_81482 0 0 0 0 1 UPK3B chr7:76140369 5'GT 76140369 Upstream 39bp
chr19 15940105 15940105 1 + G A UCEC 15940102 + 15940082 15940122 41 AAGAGATCCACCTGCGACCTCGGGTCCTCAGACCAGCCCAA AAGAGATCCACCTGCGACCTCGGATCCTCAGACCAGCCCAA < 41bp 0.720602014855985 0.486116996922912 0.40781474 0.20376852 prediction 0.441204029711969 Functional Loss - UCA1 ENSG00000214049 ncRNA_exonic Human processed_transcript chr19:15940102 chr19:15940105 . . 0 24 hm5C_associated_SNPs_81484 0 0 1 0 1 UCA1 chr19:15940148 5'GT 15940148 Upstream 44bp
chr3 127983500 127983500 1 + C T UCEC 127983498 + 127983478 127983518 41 TCCATCCCAACGAGAGATCCCTCGGGACCGTTCCTCATGTC TCCATCCCAACGAGAGATCCCTTGGGACCGTTCCTCATGTC < 41bp 0.720600510513515 0.447813546787823 0.10438213 0.10055941 prediction 0.44120102102703 Functional Loss - EEFSEC ENSG00000132394 CDS Human protein_coding chr3:127983498 chr3:127983500 nonsynonymous SNV 0.565 0 23 hm5C_associated_SNPs_81486 0 0 1 0 1 EEFSEC chr3:127983460 3'AG 127983460 Downstream 41bp
chr1 45806886 45806886 1 + C T PRAD 45806884 + 45806864 45806904 41 GCTAATTTCGTGGCTGTGGACACGGTGAGAGTTGGGAAACA GCTAATTTCGTGGCTGTGGACATGGTGAGAGTTGGGAAACA < 41bp 0.819146745136102 0.598546371439451 0.5063542 0.29206342 prediction 0.441200747393301 Functional Loss - TOE1 ENSG00000132773 CDS Human protein_coding chr1:45806884 chr1:45806886 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_81487 0 0 0 0 1 TOE1 chr1:45806887 5'GT 45806887 Upstream 2bp
chr2 75115095 75115095 1 + C T SKCM 75115093 + 75115073 75115113 41 CGTAACATTCTCATCGATTTCACCAAGCGTGGACTACTCTT CGTAACATTCTCATCGATTTCATCAAGCGTGGACTACTCTT < 41bp 0.720598672422584 0.408781003152461 0.26239902 0.17813697 prediction 0.441197344845169 Functional Loss - HK2 ENSG00000159399 CDS Human protein_coding chr2:75115093 chr2:75115095 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_81488 0 0 0 0 2 HK2 chr2:75115030 3'AG 75115030 Downstream 66bp
chr2 75115095 75115095 1 + C T SKCM 75115093 + 75115073 75115113 41 CGTAACATTCTCATCGATTTCACCAAGCGTGGACTACTCTT CGTAACATTCTCATCGATTTCATCAAGCGTGGACTACTCTT < 41bp 0.720598672422584 0.408781003152461 0.26239902 0.17813697 prediction 0.441197344845169 Functional Loss - HK2 ENSG00000159399 CDS Human protein_coding chr2:75115093 chr2:75115095 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_81488 0 0 0 0 2 HK2 chr2:75115185 5'GT 75115185 Upstream 91bp
chr16 29825753 29825753 1 + A C KIRP 29825752 + 29825732 29825772 41 GCGCTGGTGGGGGGAGTCCTCATCATCATCGCCTCCTGCGT GCGCTGGTGGGGGGAGTCCTCCTCATCATCGCCTCCTGCGT < 41bp 0.824934908927947 0.604338076373688 0.06008169 0.07385737 prediction 0.441193665108518 Functional Loss - PRRT2 ENSG00000167371 CDS Human protein_coding chr16:29825752 chr16:29825753 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_81489 0 0 0 0 2 PRRT2 chr16:29825654 3'AG 29825654 Downstream 100bp
chr16 29825753 29825753 1 + A C KIRP 29825752 + 29825732 29825772 41 GCGCTGGTGGGGGGAGTCCTCATCATCATCGCCTCCTGCGT GCGCTGGTGGGGGGAGTCCTCCTCATCATCGCCTCCTGCGT < 41bp 0.824934908927947 0.604338076373688 0.06008169 0.07385737 prediction 0.441193665108518 Functional Loss - PRRT2 ENSG00000167371 CDS Human protein_coding chr16:29825752 chr16:29825753 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_81489 0 0 0 0 2 PRRT2 chr16:29825786 5'GT 29825786 Upstream 34bp
chr7 156746890 156746890 1 + C T rs61740447 156746887 + 156746867 156746907 41 GACATGAATGACACCCTGACCTCCGCTCTCATGGGTGCCTG GACATGAATGACACCCTGACCTCTGCTCTCATGGGTGCCTG < 41bp 0.756496879736538 0.535901248890101 0.1653646 0.10297063 prediction 0.441191261692874 Functional Loss - NOM1 ENSG00000146909 CDS Human protein_coding chr7:156746887 chr7:156746890 synonymous SNV . 0 24 hm5C_associated_SNPs_81490 0 0 1 0 1 NOM1 chr7:156746797 3'AG 156746797 Downstream 94bp
chr19 15759992 15759992 1 + C T UCEC 15759990 + 15759970 15760010 41 GCCAAGTGGCAGCTCCTGGCCTCAGAGGGTAGTGCCCGTCT GCCAAGTGGCAGCTCCTGGCCTTAGAGGGTAGTGCCCGTCT < 41bp 0.720592391202855 0.443005383829078 0.03115645 0.027456224 prediction 0.441184782405711 Functional Loss - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15759990 chr19:15759992 nonsynonymous SNV 0.107 0 23 hm5C_associated_SNPs_81491 0 0 0 0 2 CYP4F3 chr19:15759970 3'AG 15759970 Downstream 23bp
chr19 15759992 15759992 1 + C T UCEC 15759990 + 15759970 15760010 41 GCCAAGTGGCAGCTCCTGGCCTCAGAGGGTAGTGCCCGTCT GCCAAGTGGCAGCTCCTGGCCTTAGAGGGTAGTGCCCGTCT < 41bp 0.720592391202855 0.443005383829078 0.03115645 0.027456224 prediction 0.441184782405711 Functional Loss - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15759990 chr19:15759992 nonsynonymous SNV 0.107 0 23 hm5C_associated_SNPs_81491 0 0 0 0 2 CYP4F3 chr19:15760091 5'GT 15760091 Upstream 100bp
chr3 45048962 45048962 1 + G A COAD 45048959 + 45048939 45048979 41 ACTCTTCAGGAGGAGGCCTGCTCGCTGGCCAGCTTGCTGGT ACTCTTCAGGAGGAGGCCTGCTCACTGGCCAGCTTGCTGGT < 41bp 0.786892525744296 0.566304513481896 0.34062222 0.18767735 prediction 0.4411760245248 Functional Loss - EXOSC7 ENSG00000075914 CDS Human protein_coding chr3:45048959 chr3:45048962 synonymous SNV . 0 24 hm5C_associated_SNPs_81492 0 0 1 0 1 EXOSC7 chr3:45048912 3'AG 45048912 Downstream 51bp
chr3 128979638 128979638 1 + G A STAD 128979635 + 128979615 128979655 41 TCCTCCTTCATGTCAGAAATCTCGGATGAATTCAAGGTACC TCCTCCTTCATGTCAGAAATCTCAGATGAATTCAAGGTACC < 41bp 0.786932108829724 0.566350218319746 0.69340754 0.39366332 prediction 0.441163781019957 Functional Loss - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128979635 chr3:128979638 synonymous SNV . 0 24 hm5C_associated_SNPs_81497 0 0 1 0 1 COPG1 chr3:128979650 5'GT 128979650 Upstream 13bp
chr1 28562926 28562926 1 + G C STAD 28562922 + 28562902 28562942 41 ATCCGGGAAGCCGGTGGGGCCTTCGGAAAGAGAGAGCAGGC ATCCGGGAAGCCGGTGGGGCCTTCCGAAAGAGAGAGCAGGC < 41bp 0.720578061549266 0.442893152563228 0.3123814 0.21189734 prediction 0.441156123098531 Functional Loss - ATPIF1 ENSG00000130770 CDS Human protein_coding chr1:28562922 chr1:28562926 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_81502 0 0 1 0 2 ATPIF1 chr1:28562872 3'AG 28562872 Downstream 55bp
chr1 28562926 28562926 1 + G C STAD 28562922 + 28562902 28562942 41 ATCCGGGAAGCCGGTGGGGCCTTCGGAAAGAGAGAGCAGGC ATCCGGGAAGCCGGTGGGGCCTTCCGAAAGAGAGAGCAGGC < 41bp 0.720578061549266 0.442893152563228 0.3123814 0.21189734 prediction 0.441156123098531 Functional Loss - ATPIF1 ENSG00000130770 CDS Human protein_coding chr1:28562922 chr1:28562926 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_81502 0 0 1 0 2 ATPIF1 chr1:28562963 5'GT 28562963 Upstream 38bp
chr10 75673101 75673101 1 + T C rs2227564 75673100 + 75673080 75673120 41 ATGTGCAGGTGGGCCTAAAGCTGCTTGTCCAAGAGTGCATG ATGTGCAGGTGGGCCTAAAGCCGCTTGTCCAAGAGTGCATG < 41bp 0.803250272163187 0.582673128218213 0.046070904 0.115190774 prediction 0.441154287889948 Functional Loss - PLAU ENSG00000122861 CDS Human protein_coding chr10:75673100 chr10:75673101 nonsynonymous SNV 0.120 0 22 hm5C_associated_SNPs_81505 1 1 0 0 2 PLAU chr10:75673048 3'AG 75673048 Downstream 54bp
chr10 75673101 75673101 1 + T C rs2227564 75673100 + 75673080 75673120 41 ATGTGCAGGTGGGCCTAAAGCTGCTTGTCCAAGAGTGCATG ATGTGCAGGTGGGCCTAAAGCCGCTTGTCCAAGAGTGCATG < 41bp 0.803250272163187 0.582673128218213 0.046070904 0.115190774 prediction 0.441154287889948 Functional Loss - PLAU ENSG00000122861 CDS Human protein_coding chr10:75673100 chr10:75673101 nonsynonymous SNV 0.120 0 22 hm5C_associated_SNPs_81505 1 1 0 0 2 PLAU chr10:75673139 5'GT 75673139 Upstream 39bp
chrX 47102868 47102868 1 + G T SKCM 47102865 + 47102845 47102885 41 TCGTGGTTCCTGTCTACCTGCGGGAGCGCACCCCTGCCCGT TCGTGGTTCCTGTCTACCTGCGGTAGCGCACCCCTGCCCGT < 41bp 0.937073732043678 0.716496602912125 0.9201515 0.18154955 prediction 0.441154258263105 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47102865 chrX:47102868 stopgain 1.000 0 24 hm5C_associated_SNPs_81506 0 0 1 0 1 USP11 chrX:47102795 3'AG 47102795 Downstream 74bp
chr2 74074603 74074603 1 + G T rs116012954 74074601 + 74074581 74074621 41 GGGTAGCACAACAGAAGCAGCAGCAATTGGAACAGGAACAG GGGTAGCACAACAGAAGCAGCATCAATTGGAACAGGAACAG < 41bp 0.720575835665745 0.378023623873323 0.07163808 0.026765287 prediction 0.44115167133149 Functional Loss - STAMBP ENSG00000124356 CDS Human protein_coding chr2:74074601 chr2:74074603 nonsynonymous SNV 0.951 2 23 hm5C_associated_SNPs_81507 0 0 1 0 1 STAMBP chr2:74074514 3'AG 74074514 Downstream 90bp
chr17 41290680 41290680 1 + G A HNSC 41290677 + 41290657 41290697 41 CACCCCTTTCTGTGCAGGTGCTGGAAGCCCAGGAAGCACAC CACCCCTTTCTGTGCAGGTGCTGAAAGCCCAGGAAGCACAC < 41bp 0.761287665359158 0.540711932027677 0.557312 0.24612156 prediction 0.441151466662963 Functional Loss - NBR2 ENSG00000198496 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:41290677 chr17:41290680 . . 0 24 hm5C_associated_SNPs_81508 0 0 1 0 1 NBR2 chr17:41290674 3'AG 41290674 Downstream 7bp
chr1 24668748 24668748 1 + G A BLCA 24668745 + 24668725 24668765 41 CACCGTGCTGTCTGCCAGATCAAGATCTTCTGTGACAAGGT CACCGTGCTGTCTGCCAGATCAAAATCTTCTGTGACAAGGT < 41bp 0.784519213901212 0.563949229667513 0.35005096 0.23825714 prediction 0.441139968467398 Functional Loss - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24668745 chr1:24668748 synonymous SNV . 0 24 hm5C_associated_SNPs_81510 0 0 0 0 1 GRHL3 chr1:24668763 5'GT 24668763 Upstream 16bp
chr9 100124715 100124715 1 + T C UCEC 100124714 + 100124694 100124734 41 ACCCAGTGCCAGTGCTACCTCTGCAGGCAGGTAGGACACAA ACCCAGTGCCAGTGCTACCTCCGCAGGCAGGTAGGACACAA < 41bp 0.817298306602408 0.59672876546289 0.27947682 0.13232848 prediction 0.441139082279036 Functional Loss - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100124714 chr9:100124715 synonymous SNV . 0 22 hm5C_associated_SNPs_81511 0 0 0 0 2 CCDC180 chr9:100124645 3'AG 100124645 Downstream 71bp
chr9 100124715 100124715 1 + T C UCEC 100124714 + 100124694 100124734 41 ACCCAGTGCCAGTGCTACCTCTGCAGGCAGGTAGGACACAA ACCCAGTGCCAGTGCTACCTCCGCAGGCAGGTAGGACACAA < 41bp 0.817298306602408 0.59672876546289 0.27947682 0.13232848 prediction 0.441139082279036 Functional Loss - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100124714 chr9:100124715 synonymous SNV . 0 22 hm5C_associated_SNPs_81511 0 0 0 0 2 CCDC180 chr9:100124723 5'GT 100124723 Upstream 9bp
chr9 74817603 74817603 1 + C T STAD 74817600 + 74817580 74817620 41 GCTGACCAAGTACACATTTCCTGCAGAACACAGATTCCAGA GCTGACCAAGTACACATTTCCTGTAGAACACAGATTCCAGA < 41bp 0.75162243517201 0.531053483818526 0.31604367 0.32770175 prediction 0.441137902706968 Functional Loss - GDA ENSG00000119125 CDS Human protein_coding chr9:74817600 chr9:74817603 nonsynonymous SNV 0.215 0 24 hm5C_associated_SNPs_81512 0 0 1 1 1 GDA chr9:74817658 5'GT 74817658 Upstream 56bp
chr19 7682264 7682264 1 + G A COAD 7682261 + 7682241 7682281 41 CAAGCCGCCTGCCTGGAAGCCGCGAACGGGACTGGGAAAAT CAAGCCGCCTGCCTGGAAGCCGCAAACGGGACTGGGAAAAT < 41bp 0.720568781508072 0.47993084419573 0.42397183 0.15032941 prediction 0.441137563016144 Functional Loss - CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7682261 chr19:7682264 nonsynonymous SNV 0.019 2 24 hm5C_associated_SNPs_81513 0 0 0 0 2 CAMSAP3 chr19:7682212 3'AG 7682212 Downstream 53bp
chr19 7682264 7682264 1 + G A COAD 7682261 + 7682241 7682281 41 CAAGCCGCCTGCCTGGAAGCCGCGAACGGGACTGGGAAAAT CAAGCCGCCTGCCTGGAAGCCGCAAACGGGACTGGGAAAAT < 41bp 0.720568781508072 0.47993084419573 0.42397183 0.15032941 prediction 0.441137563016144 Functional Loss - CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7682261 chr19:7682264 nonsynonymous SNV 0.019 2 24 hm5C_associated_SNPs_81513 0 0 0 0 2 CAMSAP3 chr19:7682324 5'GT 7682324 Upstream 61bp
chr6 44198148 44198148 1 + G A LUSC 44198145 + 44198125 44198165 41 GGCCTTCTGCCTGCCAGCTACACGGCCCCCATCATGAGTGG GGCCTTCTGCCTGCCAGCTACACAGCCCCCATCATGAGTGG < 41bp 0.790067649875633 0.569502159386409 0.49962533 0.32944834 prediction 0.441130980978448 Functional Loss - SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44198145 chr6:44198148 synonymous SNV . 0 24 hm5C_associated_SNPs_81515 0 0 1 1 1 SLC29A1 chr6:44198084 3'AG 44198084 Downstream 65bp
chr2 172952754 172952754 1 + G A UCEC 172952751 + 172952731 172952771 41 GTCAAGATCTGGTTCCAAAACAAGCGATCCAAGTTCAAGAA GTCAAGATCTGGTTCCAAAACAAACGATCCAAGTTCAAGAA < 41bp 0.720558247644148 0.482005581040242 0.74551386 0.23570287 prediction 0.441116495288296 Functional Loss - DLX1 ENSG00000144355 CDS Human protein_coding chr2:172952751 chr2:172952754 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_81518 0 0 0 0 1 DLX1 chr2:172952731 3'AG 172952731 Downstream 24bp
chr5 113699689 113699689 1 + G A SKCM 113699686 + 113699666 113699706 41 CTGATCATCGTGTACCACGCCAGGGAAATACAGGTAACTTA CTGATCATCGTGTACCACGCCAGAGAAATACAGGTAACTTA < 41bp 0.720557342850728 0.484197848317393 0.34734693 0.324383 prediction 0.441114685701456 Functional Loss - KCNN2 ENSG00000080709 CDS Human protein_coding chr5:113699686 chr5:113699689 synonymous SNV . 0 24 hm5C_associated_SNPs_81520 0 0 0 0 2 KCNN2 chr5:113699603 3'AG 113699603 Downstream 87bp
chr5 113699689 113699689 1 + G A SKCM 113699686 + 113699666 113699706 41 CTGATCATCGTGTACCACGCCAGGGAAATACAGGTAACTTA CTGATCATCGTGTACCACGCCAGAGAAATACAGGTAACTTA < 41bp 0.720557342850728 0.484197848317393 0.34734693 0.324383 prediction 0.441114685701456 Functional Loss - KCNN2 ENSG00000080709 CDS Human protein_coding chr5:113699686 chr5:113699689 synonymous SNV . 0 24 hm5C_associated_SNPs_81520 0 0 0 0 2 KCNN2 chr5:113699698 5'GT 113699698 Upstream 10bp
chrX 49161385 49161385 1 + A T LUSC 49161381 + 49161361 49161401 41 CCTATCGGTCTAGACCAAGACTCTATGTAGAGCCCCCTGAA CCTATCGGTCTAGACCAAGACTCTTTGTAGAGCCCCCTGAA < 41bp 0.720555092005781 0.369934780171013 0.9241173 0.11759144 prediction 0.441110184011563 Functional Loss - GAGE10 ENSG00000215274 CDS Human protein_coding chrX:49161381 chrX:49161385 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_81521 0 0 0 0 1 GAGE10 chrX:49161419 5'GT 49161419 Upstream 35bp
chr8 19809439 19809439 1 + C T ESCA 19809437 + 19809417 19809457 41 ACTGGTGGGACAGGATGTGGCCCGGTTTATCAACTGGATGG ACTGGTGGGACAGGATGTGGCCTGGTTTATCAACTGGATGG < 41bp 0.720553656334069 0.459142316666985 0.19600996 0.22707424 prediction 0.441107312668138 Functional Loss - LPL ENSG00000175445 CDS Human protein_coding chr8:19809437 chr8:19809439 nonsynonymous SNV 0.992 2 23 hm5C_associated_SNPs_81522 0 0 0 0 1 LPL chr8:19809459 5'GT 19809459 Upstream 21bp
chr19 45296736 45296736 1 + G A HNSC 45296733 + 45296713 45296753 41 CCTCCCGACCTCCCCCAGCACTCGGACAGCCAGACCTGCCC CCTCCCGACCTCCCCCAGCACTCAGACAGCCAGACCTGCCC < 41bp 0.785628255298354 0.565080395798056 0.17310035 0.10246247 prediction 0.441095719000596 Functional Loss - CBLC ENSG00000142273 CDS Human protein_coding chr19:45296733 chr19:45296736 synonymous SNV . 0 24 hm5C_associated_SNPs_81525 0 0 0 0 1 CBLC chr19:45296731 3'AG 45296731 Downstream 6bp
chr10 35894541 35894541 1 + T C UCEC 35894540 + 35894520 35894560 41 TTTCTCATCATCACATTAAACTGCAACGTGACCATGGTGGG TTTCTCATCATCACATTAAACCGCAACGTGACCATGGTGGG < 41bp 0.748799936492993 0.52825246247943 0.016097367 0.020780832 prediction 0.441094948027128 Functional Loss - GJD4 ENSG00000177291 CDS Human protein_coding chr10:35894540 chr10:35894541 nonsynonymous SNV 0.860 3 22 hm5C_associated_SNPs_81526 0 0 0 0 1 GJD4 chr10:35894559 5'GT 35894559 Upstream 19bp
chrX 130218925 130218925 1 + T C PAAD 130218924 + 130218904 130218944 41 ATCAAGGTCTGGATGTAGTGCTGGATGACAATCAGAATGTG ATCAAGGTCTGGATGTAGTGCCGGATGACAATCAGAATGTG < 41bp 0.80530730779232 0.584760303113863 0.091330945 0.18982732 prediction 0.441094009356915 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130218924 chrX:130218925 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_81527 0 0 0 0 1 ARHGAP36 chrX:130218888 3'AG 130218888 Downstream 38bp
chr12 130847597 130847597 1 + C T BLCA 130847595 + 130847575 130847615 41 CCAGCCGGATCATCGTGTACCGCGATGGCGTAGGAGACGGC CCAGCCGGATCATCGTGTACCGTGATGGCGTAGGAGACGGC < 41bp 0.863513526519333 0.642966820378106 0.39725357 0.38297856 prediction 0.441093412282455 Functional Loss - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130847595 chr12:130847597 synonymous SNV . 0 23 hm5C_associated_SNPs_81528 0 0 0 0 2 PIWIL1 chr12:130847536 3'AG 130847536 Downstream 62bp
chr12 130847597 130847597 1 + C T BLCA 130847595 + 130847575 130847615 41 CCAGCCGGATCATCGTGTACCGCGATGGCGTAGGAGACGGC CCAGCCGGATCATCGTGTACCGTGATGGCGTAGGAGACGGC < 41bp 0.863513526519333 0.642966820378106 0.39725357 0.38297856 prediction 0.441093412282455 Functional Loss - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130847595 chr12:130847597 synonymous SNV . 0 23 hm5C_associated_SNPs_81528 0 0 0 0 2 PIWIL1 chr12:130847689 5'GT 130847689 Upstream 93bp
chr10 88759254 88759254 1 + G T UCEC 88759251 + 88759231 88759271 41 GAATGGTGCATGGAGAATATCAAGACCAAGAAATCCACAAT GAATGGTGCATGGAGAATATCAATACCAAGAAATCCACAAT < 41bp 0.720544471721036 0.360439182612588 0.9052713 0.3736264 prediction 0.441088943442072 Functional Loss - AGAP11 ENSG00000151303;ENSG00000240089;ENSG00000271880;ENSG00000272508 ncRNA_exonic Human other chr10:88759251 chr10:88759254 . . 0 24 hm5C_associated_SNPs_81531 0 0 0 1 2 AGAP11 chr10:88759206 3'AG 88759206 Downstream 49bp
chr10 88759254 88759254 1 + G T UCEC 88759251 + 88759231 88759271 41 GAATGGTGCATGGAGAATATCAAGACCAAGAAATCCACAAT GAATGGTGCATGGAGAATATCAATACCAAGAAATCCACAAT < 41bp 0.720544471721036 0.360439182612588 0.9052713 0.3736264 prediction 0.441088943442072 Functional Loss - AGAP11 ENSG00000151303;ENSG00000240089;ENSG00000271880;ENSG00000272508 ncRNA_exonic Human other chr10:88759251 chr10:88759254 . . 0 24 hm5C_associated_SNPs_81531 0 0 0 1 2 AGAP11 chr10:88759348 5'GT 88759348 Upstream 95bp
chr22 50615408 50615408 1 + C T UCEC 50615406 + 50615386 50615426 41 ACACCCCGCACAACTTCACGCGCGACCAGGCGCTGTACGCC ACACCCCGCACAACTTCACGCGTGACCAGGCGCTGTACGCC < 41bp 0.820589721329708 0.600047153821675 0.06434256 0.09633058 prediction 0.441085135016065 Functional Loss - PANX2 ENSG00000073150 CDS Human protein_coding chr22:50615406 chr22:50615408 synonymous SNV . 0 23 hm5C_associated_SNPs_81532 0 0 1 0 1 PANX2 chr22:50615368 3'AG 50615368 Downstream 41bp
chr3 128525422 128525422 1 + G A GBM 128525419 + 128525399 128525439 41 TGTTGGGAAACAAGATTGACCTCGAAAACAGACAAGTAAGT TGTTGGGAAACAAGATTGACCTCAAAAACAGACAAGTAAGT < 41bp 0.720537853803008 0.499679152936255 0.124441355 0.013913214 prediction 0.441075707606015 Functional Loss - RAB7A ENSG00000075785 CDS Human protein_coding chr3:128525419 chr3:128525422 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_81535 0 0 1 0 1 RAB7A chr3:128525433 5'GT 128525433 Upstream 12bp
chr12 110924408 110924408 1 + C T PRAD 110924405 + 110924385 110924425 41 GAAACAGCATTACCCTTGCACTACATGGCGACATCAACTGG GAAACAGCATTACCCTTGCACTATATGGCGACATCAACTGG < 41bp 0.732318165685323 0.511785779950553 0.48744705 0.2788033 prediction 0.441064771469541 Functional Loss - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110924405 chr12:110924408 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_81539 0 0 1 1 1 FAM216A chr12:110924339 3'AG 110924339 Downstream 70bp
chr3 56627978 56627978 1 + C T SKCM 56627976 + 56627956 56627996 41 GTATGTATCTTGCCAGCTTTCTCCGTTCTATGACTGCTCTC GTATGTATCTTGCCAGCTTTCTTCGTTCTATGACTGCTCTC < 41bp 0.720531581639518 0.431830270233769 0.34931746 0.20877936 prediction 0.441063163279036 Functional Loss - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56627976 chr3:56627978 synonymous SNV . 0 23 hm5C_associated_SNPs_81541 0 0 1 6 2 CCDC66 chr3:56627972 3'AG 56627972 Downstream 7bp
chr3 56627978 56627978 1 + C T SKCM 56627976 + 56627956 56627996 41 GTATGTATCTTGCCAGCTTTCTCCGTTCTATGACTGCTCTC GTATGTATCTTGCCAGCTTTCTTCGTTCTATGACTGCTCTC < 41bp 0.720531581639518 0.431830270233769 0.34931746 0.20877936 prediction 0.441063163279036 Functional Loss - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56627976 chr3:56627978 synonymous SNV . 0 23 hm5C_associated_SNPs_81541 0 0 1 6 2 CCDC66 chr3:56628056 5'GT 56628056 Upstream 79bp
chr1 16065188 16065188 1 + C T rs150136696 16065186 + 16065166 16065206 41 TCCCTTCGATGTGGTCAGCACGCGGCTATACAATCAGCCGG TCCCTTCGATGTGGTCAGCACGTGGCTATACAATCAGCCGG < 41bp 0.829022231087584 0.608491889221045 0.12953946 0.11619204 prediction 0.441060683733077 Functional Loss - SLC25A34 ENSG00000162461 CDS Human protein_coding chr1:16065186 chr1:16065188 nonsynonymous SNV 0.971 5 23 hm5C_associated_SNPs_81543 0 0 0 0 1 SLC25A34 chr1:16065089 3'AG 16065089 Downstream 100bp
chr19 39600743 39600743 1 + G A SKCM 39600740 + 39600720 39600760 41 GTGGTGAGACCCCTGTTTGGCCGGAGGATGTACCTCTAGGG GTGGTGAGACCCCTGTTTGGCCGAAGGATGTACCTCTAGGG < 41bp 0.788355743964878 0.56782628662109 0.6552124 0.22279397 prediction 0.441058914687574 Functional Loss - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39600740 chr19:39600743 synonymous SNV . 0 24 hm5C_associated_SNPs_81545 0 0 0 0 1 ACP7 chr19:39600693 3'AG 39600693 Downstream 51bp
chr7 121944239 121944239 1 + T C rs145467198 121944238 + 121944218 121944258 41 CCGTCACTCCTGCCTTGGGGCTCGTGTCGTAGGCCACAGGC CCGTCACTCCTGCCTTGGGGCCCGTGTCGTAGGCCACAGGC < 41bp 0.720526126807156 0.488991587450043 0.37082452 0.23970723 prediction 0.441052253614312 Functional Loss - FEZF1 ENSG00000128610 CDS Human protein_coding chr7:121944238 chr7:121944239 nonsynonymous SNV 0.951 0 22 hm5C_associated_SNPs_81547 0 0 0 0 1 FEZF1 chr7:121944322 5'GT 121944322 Upstream 84bp
chr7 121944240 121944240 1 + C T SKCM 121944238 + 121944218 121944258 41 CCGTCACTCCTGCCTTGGGGCTCGTGTCGTAGGCCACAGGC CCGTCACTCCTGCCTTGGGGCTTGTGTCGTAGGCCACAGGC < 41bp 0.720526126807156 0.472909900793351 0.37082452 0.30905372 prediction 0.441052253614312 Functional Loss - FEZF1 ENSG00000128610 CDS Human protein_coding chr7:121944238 chr7:121944240 synonymous SNV . 0 23 hm5C_associated_SNPs_81548 0 0 0 0 1 FEZF1 chr7:121944322 5'GT 121944322 Upstream 83bp
chr1 205041094 205041094 1 + G A SKCM 205041091 + 205041071 205041111 41 TCAGATCCGCTACTGGAAAGCTGGGGACAAAGAAGCAGCTG TCAGATCCGCTACTGGAAAGCTGAGGACAAAGAAGCAGCTG < 41bp 0.759439070209445 0.53891517392171 0.49247763 0.31057233 prediction 0.44104779257547 Functional Loss - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205041091 chr1:205041094 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_81550 0 0 0 0 1 CNTN2 chr1:205041075 3'AG 205041075 Downstream 20bp
chr7 55496101 55496101 1 + G A STAD 55496098 + 55496078 55496118 41 GGTGTCTAGATTACGGAGCACACGGGTGCCGCATTCCTGAC GGTGTCTAGATTACGGAGCACACAGGTGCCGCATTCCTGAC < 41bp 0.720513219600227 0.474149110492971 0.4077921 0.041838944 prediction 0.441026439200454 Functional Loss - LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55496098 chr7:55496101 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_81555 0 0 0 0 2 LANCL2 chr7:55496068 3'AG 55496068 Downstream 34bp
chr7 55496101 55496101 1 + G A STAD 55496098 + 55496078 55496118 41 GGTGTCTAGATTACGGAGCACACGGGTGCCGCATTCCTGAC GGTGTCTAGATTACGGAGCACACAGGTGCCGCATTCCTGAC < 41bp 0.720513219600227 0.474149110492971 0.4077921 0.041838944 prediction 0.441026439200454 Functional Loss - LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55496098 chr7:55496101 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_81555 0 0 0 0 2 LANCL2 chr7:55496140 5'GT 55496140 Upstream 40bp
chr9 102988444 102988444 1 + G T STAD 102988442 + 102988422 102988462 41 TTGCACTTGACCACCCGGCACAGGAGCCCTAAGTGTTTGGC TTGCACTTGACCACCCGGCACATGAGCCCTAAGTGTTTGGC < 41bp 0.720512997144658 0.373034816229967 0.47176203 0.10788858 prediction 0.441025994289315 Functional Loss - INVS ENSG00000119509 CDS Human protein_coding chr9:102988442 chr9:102988444 nonsynonymous SNV 0.973 2 23 hm5C_associated_SNPs_81556 0 0 0 0 1 INVS chr9:102988517 5'GT 102988517 Upstream 74bp
chr19 42901317 42901317 1 + G A rs375556902 42901314 + 42901294 42901334 41 GAACCTGAGGGATCGGAATCCTGGTCCACTCCGCAGAGGCC GAACCTGAGGGATCGGAATCCTGATCCACTCCGCAGAGGCC < 41bp 0.720499054063413 0.487699577366163 0.88010764 0.70582724 prediction 0.440998108126826 Functional Loss - LIPE-AS1;LOC101930071 ENSG00000213904 ncRNA_exonic Human antisense chr19:42901314 chr19:42901317 . . 0 24 hm5C_associated_SNPs_81560 0 0 0 0 1 LIPE-AS1;LOC101930071 chr19:42901376 5'GT 42901376 Upstream 60bp
chr8 24207384 24207384 1 + C T SKCM 24207381 + 24207361 24207401 41 CTGTTCTCTGCTGCAGACTTCTCCATTGTGGTTGGGGTGCT CTGTTCTCTGCTGCAGACTTCTCTATTGTGGTTGGGGTGCT < 41bp 0.747451307375306 0.526952328474587 0.95780075 0.91188014 prediction 0.440997957801438 Functional Loss - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24207381 chr8:24207384 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_81561 0 0 0 0 1 ADAM28 chr8:24207377 3'AG 24207377 Downstream 8bp
chr10 70496795 70496795 1 + C T STAD 70496792 + 70496772 70496812 41 ACAAGCCGCAGCTGCAGCAGCTGCATTACAACAGGTAAATC ACAAGCCGCAGCTGCAGCAGCTGTATTACAACAGGTAAATC < 41bp 0.720495910500595 0.494218301045438 0.13210022 0.08613324 prediction 0.440991821001191 Functional Loss - CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70496792 chr10:70496795 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_81563 0 0 1 1 1 CCAR1 chr10:70496805 5'GT 70496805 Upstream 11bp
chr20 58519515 58519515 1 + C T UCEC 58519513 + 58519493 58519533 41 GAACAAAACGGAAGCCGTGCCCCGAGTGGGAGGACTTCTTG GAACAAAACGGAAGCCGTGCCCTGAGTGGGAGGACTTCTTG < 41bp 0.845951774532015 0.625457623688883 0.17583206 0.10890669 prediction 0.440988301686263 Functional Loss - FAM217B ENSG00000196227 CDS Human protein_coding chr20:58519513 chr20:58519515 stopgain 0.000 0 23 hm5C_associated_SNPs_81564 0 0 1 0 1 FAM217B chr20:58519451 3'AG 58519451 Downstream 65bp
chr15 27128374 27128374 1 + G A SKCM 27128371 + 27128351 27128391 41 AGCTTCGGCCCGGTGTCCGACACGGAAATGGTAGGTCCCGG AGCTTCGGCCCGGTGTCCGACACAGAAATGGTAGGTCCCGG < 41bp 0.79120190750688 0.570712552576157 0.2677026 0.23413926 prediction 0.440978709861445 Functional Loss - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27128371 chr15:27128374 synonymous SNV . 0 24 hm5C_associated_SNPs_81566 0 0 0 0 2 GABRA5 chr15:27128313 3'AG 27128313 Downstream 62bp
chr15 27128374 27128374 1 + G A SKCM 27128371 + 27128351 27128391 41 AGCTTCGGCCCGGTGTCCGACACGGAAATGGTAGGTCCCGG AGCTTCGGCCCGGTGTCCGACACAGAAATGGTAGGTCCCGG < 41bp 0.79120190750688 0.570712552576157 0.2677026 0.23413926 prediction 0.440978709861445 Functional Loss - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27128371 chr15:27128374 synonymous SNV . 0 24 hm5C_associated_SNPs_81566 0 0 0 0 2 GABRA5 chr15:27128380 5'GT 27128380 Upstream 7bp
chr11 71850039 71850039 1 + G A rs373601622 71850036 + 71850016 71850056 41 TGGAAGAAGAATGCCTGCTGCACGGCCAGCACCAGCCAGGA TGGAAGAAGAATGCCTGCTGCACAGCCAGCACCAGCCAGGA < 41bp 0.803399898479805 0.582913370305339 0.16398245 0.07143381 prediction 0.440973056348932 Functional Loss - FOLR3 ENSG00000110203 CDS Human protein_coding chr11:71850036 chr11:71850039 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_81568 0 0 0 0 1 FOLR3 chr11:71850007 3'AG 71850007 Downstream 33bp
chr17 65914934 65914934 1 + G T HNSC 65914931 + 65914911 65914951 41 TATGGCGGCCAAGGCTCCTCCAGGAGGAGGGACTACACGGA TATGGCGGCCAAGGCTCCTCCAGTAGGAGGGACTACACGGA < 41bp 0.720476607190043 0.342256852500183 0.89134914 0.53239614 prediction 0.440953214380086 Functional Loss - BPTF ENSG00000171634 CDS Human protein_coding chr17:65914931 chr17:65914934 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_81575 0 0 1 0 1 BPTF chr17:65914954 5'GT 65914954 Upstream 21bp
chr15 48537004 48537004 1 + G A SKCM 48537001 + 48536981 48537021 41 CATGAATGACACCATCATTTCTGGGATGAACTGCAATGGTT CATGAATGACACCATCATTTCTGAGATGAACTGCAATGGTT < 41bp 0.739784176027273 0.519307863101774 0.37846446 0.089686036 prediction 0.440952625850998 Functional Loss - SLC12A1 ENSG00000074803 CDS Human protein_coding chr15:48537001 chr15:48537004 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_81576 0 0 0 0 2 SLC12A1 chr15:48536950 3'AG 48536950 Downstream 55bp
chr15 48537004 48537004 1 + G A SKCM 48537001 + 48536981 48537021 41 CATGAATGACACCATCATTTCTGGGATGAACTGCAATGGTT CATGAATGACACCATCATTTCTGAGATGAACTGCAATGGTT < 41bp 0.739784176027273 0.519307863101774 0.37846446 0.089686036 prediction 0.440952625850998 Functional Loss - SLC12A1 ENSG00000074803 CDS Human protein_coding chr15:48537001 chr15:48537004 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_81576 0 0 0 0 2 SLC12A1 chr15:48537101 5'GT 48537101 Upstream 98bp
chr16 55361531 55361531 1 + C T SKCM 55361529 + 55361509 55361549 41 TGGAATTGAGTGGCGCCGGTCGCCGAAAGAACGCGACCCGG TGGAATTGAGTGGCGCCGGTCGTCGAAAGAACGCGACCCGG < 41bp 0.720472888327736 0.450441499074152 0.8092393 0.58327734 prediction 0.440945776655472 Functional Loss - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55361529 chr16:55361531 synonymous SNV . 0 23 hm5C_associated_SNPs_81578 0 0 0 0 1 IRX6 chr16:55361498 3'AG 55361498 Downstream 34bp
chr15 91185245 91185245 1 + C T SKCM 91185242 + 91185222 91185262 41 GGTCAGCCTGAACGTGGACACTCCATTTCCACTGGAAGAGG GGTCAGCCTGAACGTGGACACTCTATTTCCACTGGAAGAGG < 41bp 0.744752870948997 0.524280173862114 0.935966 0.69050425 prediction 0.440945394173767 Functional Loss - CRTC3 ENSG00000140577 CDS Human protein_coding chr15:91185242 chr15:91185245 nonsynonymous SNV 0.048 0 24 hm5C_associated_SNPs_81579 0 0 1 0 2 CRTC3 chr15:91185164 3'AG 91185164 Downstream 82bp
chr15 91185245 91185245 1 + C T SKCM 91185242 + 91185222 91185262 41 GGTCAGCCTGAACGTGGACACTCCATTTCCACTGGAAGAGG GGTCAGCCTGAACGTGGACACTCTATTTCCACTGGAAGAGG < 41bp 0.744752870948997 0.524280173862114 0.935966 0.69050425 prediction 0.440945394173767 Functional Loss - CRTC3 ENSG00000140577 CDS Human protein_coding chr15:91185242 chr15:91185245 nonsynonymous SNV 0.048 0 24 hm5C_associated_SNPs_81579 0 0 1 0 2 CRTC3 chr15:91185167 3'AG 91185167 Downstream 79bp
chr9 138557188 138557188 1 + G A READ 138557185 + 138557165 138557205 41 AGGAACGGGACCGAGACCCACACGCTGGCGCTCTATGGTAC AGGAACGGGACCGAGACCCACACACTGGCGCTCTATGGTAC < 41bp 0.782733679369118 0.562266369570626 0.06291488 0.043219924 prediction 0.440934619596984 Functional Loss - LCN9 ENSG00000148386 CDS Human protein_coding chr9:138557185 chr9:138557188 synonymous SNV . 0 24 hm5C_associated_SNPs_81582 0 0 0 0 2 LCN9 chr9:138557091 3'AG 138557091 Downstream 98bp
chr9 138557188 138557188 1 + G A READ 138557185 + 138557165 138557205 41 AGGAACGGGACCGAGACCCACACGCTGGCGCTCTATGGTAC AGGAACGGGACCGAGACCCACACACTGGCGCTCTATGGTAC < 41bp 0.782733679369118 0.562266369570626 0.06291488 0.043219924 prediction 0.440934619596984 Functional Loss - LCN9 ENSG00000148386 CDS Human protein_coding chr9:138557185 chr9:138557188 synonymous SNV . 0 24 hm5C_associated_SNPs_81582 0 0 0 0 2 LCN9 chr9:138557201 5'GT 138557201 Upstream 14bp
chr17 25628904 25628904 1 + C T UCEC 25628901 + 25628881 25628921 41 AAATTGGACTGTTGCTTTTGCTCCAGATGGTTCATACTTTG AAATTGGACTGTTGCTTTTGCTCTAGATGGTTCATACTTTG < 41bp 0.738832204038249 0.518366228372291 0.67247516 0.34047997 prediction 0.440931951331917 Functional Loss - WSB1 ENSG00000109046 CDS Human protein_coding chr17:25628901 chr17:25628904 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_81583 0 0 1 0 2 WSB1 chr17:25628814 3'AG 25628814 Downstream 91bp
chr17 25628904 25628904 1 + C T UCEC 25628901 + 25628881 25628921 41 AAATTGGACTGTTGCTTTTGCTCCAGATGGTTCATACTTTG AAATTGGACTGTTGCTTTTGCTCTAGATGGTTCATACTTTG < 41bp 0.738832204038249 0.518366228372291 0.67247516 0.34047997 prediction 0.440931951331917 Functional Loss - WSB1 ENSG00000109046 CDS Human protein_coding chr17:25628901 chr17:25628904 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_81583 0 0 1 0 2 WSB1 chr17:25628982 5'GT 25628982 Upstream 79bp
chr14 75359661 75359661 1 + G A UCEC 75359658 + 75359638 75359678 41 ACTCAGATGCCACCGGTGCCCTCGCCCTCACAGCCTCCTTC ACTCAGATGCCACCGGTGCCCTCACCCTCACAGCCTCCTTC < 41bp 0.792992069727286 0.572526545111271 0.05626437 0.050421 prediction 0.44093104923203 Functional Loss - DLST ENSG00000119689 CDS Human protein_coding chr14:75359658 chr14:75359661 synonymous SNV . 0 24 hm5C_associated_SNPs_81585 0 0 1 1 1 DLST chr14:75359689 5'GT 75359689 Upstream 29bp
chr2 27164917 27164917 1 + G A OV 27164914 + 27164894 27164934 41 CCCGCAAGGGCCGCATTATTCCCGGAGCCGATGCTGATGTG CCCGCAAGGGCCGCATTATTCCCAGAGCCGATGCTGATGTG < 41bp 0.720455436536586 0.471703478080664 0.86483634 0.43717667 prediction 0.440910873073173 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27164914 chr2:27164917 nonsynonymous SNV 0.519 5 24 hm5C_associated_SNPs_81590 0 0 1 0 2 DPYSL5 chr2:27164818 3'AG 27164818 Downstream 100bp
chr2 27164917 27164917 1 + G A OV 27164914 + 27164894 27164934 41 CCCGCAAGGGCCGCATTATTCCCGGAGCCGATGCTGATGTG CCCGCAAGGGCCGCATTATTCCCAGAGCCGATGCTGATGTG < 41bp 0.720455436536586 0.471703478080664 0.86483634 0.43717667 prediction 0.440910873073173 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27164914 chr2:27164917 nonsynonymous SNV 0.519 5 24 hm5C_associated_SNPs_81590 0 0 1 0 2 DPYSL5 chr2:27164960 5'GT 27164960 Upstream 44bp
chr1 161173236 161173236 1 + G T LUAD 161173234 + 161173214 161173254 41 TTTGACTCCCCAGAGGTGTTCGGCAGTGGCAGCCAGATGTG TTTGACTCCCCAGAGGTGTTCGTCAGTGGCAGCCAGATGTG < 41bp 0.835409635177328 0.614956327886131 0.8842555 0.4123596 prediction 0.440906614582393 Functional Loss - NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161173234 chr1:161173236 synonymous SNV . 0 23 hm5C_associated_SNPs_81592 0 0 1 0 2 NDUFS2 chr1:161173193 3'AG 161173193 Downstream 44bp
chr1 161173236 161173236 1 + G T LUAD 161173234 + 161173214 161173254 41 TTTGACTCCCCAGAGGTGTTCGGCAGTGGCAGCCAGATGTG TTTGACTCCCCAGAGGTGTTCGTCAGTGGCAGCCAGATGTG < 41bp 0.835409635177328 0.614956327886131 0.8842555 0.4123596 prediction 0.440906614582393 Functional Loss - NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161173234 chr1:161173236 synonymous SNV . 0 23 hm5C_associated_SNPs_81592 0 0 1 0 2 NDUFS2 chr1:161173333 5'GT 161173333 Upstream 98bp
chr10 71258152 71258152 1 + G A LGG 71258149 + 71258129 71258169 41 TACACCTGCTGCATCAGGAACACGGTAGACACTGCTCCTGT TACACCTGCTGCATCAGGAACACAGTAGACACTGCTCCTGT < 41bp 0.790608911480474 0.570158931061016 0.606611 0.23607826 prediction 0.440899960838915 Functional Loss - TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71258149 chr10:71258152 synonymous SNV . 0 24 hm5C_associated_SNPs_81594 0 0 0 0 1 TSPAN15 chr10:71258152 5'GT 71258152 Upstream 1bp
chr6 40347076 40347076 1 + G A UCEC 40347073 + 40347053 40347093 41 AAGAGGAGGGAGGCAGTCTGCGCGCACCGCCATTTTCTAGG AAGAGGAGGGAGGCAGTCTGCGCACACCGCCATTTTCTAGG < 41bp 0.761401164220039 0.540953265660894 0.2630403 0.15261051 prediction 0.44089579711829 Functional Loss - TDRG1 ENSG00000204091 ncRNA_exonic Human antisense chr6:40347073 chr6:40347076 . . 0 24 hm5C_associated_SNPs_81595 0 0 0 0 1 TDRG1 chr6:40347021 3'AG 40347021 Downstream 56bp
chr4 100534123 100534123 1 + G A rs145444300 100534120 + 100534100 100534140 41 TTAATCGCAGCCACCCCTGACGAGGGGGAGGAGAACCTTGA TTAATCGCAGCCACCCCTGACGAAGGGGAGGAGAACCTTGA < 41bp 0.758923601377744 0.53847665381208 0.8996273 0.3732465 prediction 0.440893895131329 Functional Loss - MTTP ENSG00000138823 CDS Human protein_coding chr4:100534120 chr4:100534123 synonymous SNV . 0 24 hm5C_associated_SNPs_81596 1 0 1 0 1 MTTP chr4:100534070 3'AG 100534070 Downstream 54bp
chr12 111085646 111085646 1 + A C BRCA 111085642 + 111085622 111085662 41 TGCAGAGGCAGGCTTCAGAGCTCCACCAGCCATCAATGCCA TGCAGAGGCAGGCTTCAGAGCTCCCCCAGCCATCAATGCCA < 41bp 0.720442322625815 0.302245492774694 0.754506 0.08043283 prediction 0.440884645251631 Functional Loss - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111085642 chr12:111085646 nonsynonymous SNV 0.117 0 25 hm5C_associated_SNPs_81601 0 0 1 1 2 TCTN1 chr12:111085554 3'AG 111085554 Downstream 93bp
chr12 111085646 111085646 1 + A C BRCA 111085642 + 111085622 111085662 41 TGCAGAGGCAGGCTTCAGAGCTCCACCAGCCATCAATGCCA TGCAGAGGCAGGCTTCAGAGCTCCCCCAGCCATCAATGCCA < 41bp 0.720442322625815 0.302245492774694 0.754506 0.08043283 prediction 0.440884645251631 Functional Loss - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111085642 chr12:111085646 nonsynonymous SNV 0.117 0 25 hm5C_associated_SNPs_81601 0 0 1 1 2 TCTN1 chr12:111085698 5'GT 111085698 Upstream 53bp
chr2 234878934 234878934 1 + G T LUAD 234878932 + 234878912 234878952 41 TCCCCCTTCGTGGTCTTCTCCTGGAATGTGGTCTTCTACAT TCCCCCTTCGTGGTCTTCTCCTTGAATGTGGTCTTCTACAT < 41bp 0.903732699334025 0.683293512337123 0.29552627 0.07381904 prediction 0.440878373993804 Functional Loss - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234878932 chr2:234878934 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_81602 0 0 0 0 1 TRPM8 chr2:234878854 3'AG 234878854 Downstream 81bp
chr17 73258942 73258942 1 + G A CESC 73258939 + 73258919 73258959 41 AAAGTACTGGCCAGATCCCTCATGATTCAGGTAAACAGCAC AAAGTACTGGCCAGATCCCTCATAATTCAGGTAAACAGCAC < 41bp 0.762816619489839 0.542377556759008 0.31752583 0.24544361 prediction 0.440878125461664 Functional Loss - MRPS7 ENSG00000125445 CDS Human protein_coding chr17:73258939 chr17:73258942 nonsynonymous SNV 0.331 0 24 hm5C_associated_SNPs_81603 0 0 1 0 2 MRPS7 chr17:73258885 3'AG 73258885 Downstream 58bp
chr17 73258942 73258942 1 + G A CESC 73258939 + 73258919 73258959 41 AAAGTACTGGCCAGATCCCTCATGATTCAGGTAAACAGCAC AAAGTACTGGCCAGATCCCTCATAATTCAGGTAAACAGCAC < 41bp 0.762816619489839 0.542377556759008 0.31752583 0.24544361 prediction 0.440878125461664 Functional Loss - MRPS7 ENSG00000125445 CDS Human protein_coding chr17:73258939 chr17:73258942 nonsynonymous SNV 0.331 0 24 hm5C_associated_SNPs_81603 0 0 1 0 2 MRPS7 chr17:73258948 5'GT 73258948 Upstream 7bp
chr10 81371713 81371713 1 + G A SKCM 81371710 + 81371690 81371730 41 GGATCCCACGGCCTGCCAGGCAGGGACGGGAGAGATGGTCT GGATCCCACGGCCTGCCAGGCAGAGACGGGAGAGATGGTCT < 41bp 0.768886472430032 0.548447869490762 0.92193866 0.9081247 prediction 0.440877205878539 Functional Loss - SFTPA1 ENSG00000122852 CDS Human protein_coding chr10:81371710 chr10:81371713 synonymous SNV . 0 24 hm5C_associated_SNPs_81604 0 0 0 0 1 SFTPA1 chr10:81371753 5'GT 81371753 Upstream 41bp
chr5 154330431 154330431 1 + G A UCEC 154330428 + 154330408 154330448 41 AAGTGCTTCTCTTGACATTTCTCGAAAATGGGAGAAGAAGA AAGTGCTTCTCTTGACATTTCTCAAAAATGGGAGAAGAAGA < 41bp 0.738936332170748 0.518498011345967 0.84644115 0.41542193 prediction 0.440876641649562 Functional Loss - MRPL22 ENSG00000082515 CDS Human protein_coding chr5:154330428 chr5:154330431 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_81605 0 0 1 0 1 MRPL22 chr5:154330498 5'GT 154330498 Upstream 68bp
chr4 95539215 95539215 1 + C T rs116241517 95539213 + 95539193 95539233 41 TAGCTTCCACACGGAGCATGCCCGAGAGCCTGGACAGCCCA TAGCTTCCACACGGAGCATGCCTGAGAGCCTGGACAGCCCA < 41bp 0.720436533008056 0.451581119561346 0.09259635 0.05693823 prediction 0.440873066016112 Functional Loss - PDLIM5 ENSG00000163110 CDS Human protein_coding chr4:95539213 chr4:95539215 synonymous SNV . 0 23 hm5C_associated_SNPs_81606 0 0 1 0 1 PDLIM5 chr4:95539155 3'AG 95539155 Downstream 61bp
chr3 56653517 56653517 1 + G A LUAD 56653514 + 56653494 56653534 41 TGATCCCGATGCACCATTGTCTGGGCCTTCAACCCAGGACC TGATCCCGATGCACCATTGTCTGAGCCTTCAACCCAGGACC < 41bp 0.778827371452905 0.558401433876797 0.92952263 0.8732731 prediction 0.440851875152217 Functional Loss - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56653514 chr3:56653517 nonsynonymous SNV 0.375 0 24 hm5C_associated_SNPs_81613 0 0 0 0 1 CCDC66 chr3:56653555 5'GT 56653555 Upstream 39bp
chr5 36183953 36183953 1 + G T SARC 36183950 + 36183930 36183970 41 TATTGTTTACAGATTAGTGACAAGAGCTGGGGTTAGGATCC TATTGTTTACAGATTAGTGACAATAGCTGGGGTTAGGATCC < 41bp 0.720425933616285 0.440383238214887 0.24381754 0.08535609 prediction 0.44085186723257 Functional Loss - SKP2 ENSG00000145604 CDS Human protein_coding chr5:36183950 chr5:36183953 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_81614 0 0 1 0 1 SKP2 chr5:36183942 3'AG 36183942 Downstream 12bp
chr1 17263309 17263309 1 + G A COAD 17263306 + 17263286 17263326 41 CTGCGGGACAAGGTGCTCCGCGAGAAGGACCTGGCGCAGCA CTGCGGGACAAGGTGCTCCGCGAAAAGGACCTGGCGCAGCA < 41bp 0.773420429225324 0.552994577074317 0.7446574 0.3528439 prediction 0.440851704302012 Functional Loss - CROCC ENSG00000058453 CDS Human protein_coding chr1:17263306 chr1:17263309 synonymous SNV . 0 24 hm5C_associated_SNPs_81615 0 0 0 0 1 CROCC chr1:17263368 5'GT 17263368 Upstream 60bp
chr13 101707767 101707767 1 + G A UCEC 101707764 + 101707744 101707784 41 GTCATGGGGTTCATTTTGCACACGACAGATTTCATGGTTGT GTCATGGGGTTCATTTTGCACACAACAGATTTCATGGTTGT < 41bp 0.722151379390974 0.501728945684257 0.43357015 0.19710079 prediction 0.440844867413434 Functional Loss - NALCN ENSG00000102452 CDS Human protein_coding chr13:101707764 chr13:101707767 synonymous SNV . 0 24 hm5C_associated_SNPs_81617 0 0 0 0 1 NALCN chr13:101707798 5'GT 101707798 Upstream 32bp
chr12 109865336 109865336 1 + C T LAML 109865333 + 109865313 109865353 41 ACCTGGGGCTGATGGAGCACCTGCGGGTGAGACGGGCTGGT ACCTGGGGCTGATGGAGCACCTGTGGGTGAGACGGGCTGGT < 41bp 0.728314152213938 0.507895461376757 0.62833774 0.43680793 prediction 0.440837381674363 Functional Loss - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109865333 chr12:109865336 nonsynonymous SNV 0.989 3 24 hm5C_associated_SNPs_81622 0 0 0 0 2 MYO1H chr12:109865274 3'AG 109865274 Downstream 63bp
chr12 109865336 109865336 1 + C T LAML 109865333 + 109865313 109865353 41 ACCTGGGGCTGATGGAGCACCTGCGGGTGAGACGGGCTGGT ACCTGGGGCTGATGGAGCACCTGTGGGTGAGACGGGCTGGT < 41bp 0.728314152213938 0.507895461376757 0.62833774 0.43680793 prediction 0.440837381674363 Functional Loss - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109865333 chr12:109865336 nonsynonymous SNV 0.989 3 24 hm5C_associated_SNPs_81622 0 0 0 0 2 MYO1H chr12:109865391 5'GT 109865391 Upstream 56bp
chr2 242144350 242144350 1 + G T LUAD 242144348 + 242144328 242144368 41 TGTTCCTGGTGGGCTGCTTCCTGGTGTTCTCAGACATACCC TGTTCCTGGTGGGCTGCTTCCTTGTGTTCTCAGACATACCC < 41bp 0.720418148018463 0.372150724039183 0.19533303 0.037857503 prediction 0.440836296036926 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242144348 chr2:242144350 synonymous SNV . 0 23 hm5C_associated_SNPs_81623 0 0 0 0 1 ANO7 chr2:242144370 5'GT 242144370 Upstream 21bp
chr2 242144351 242144351 1 + G T LUAD 242144348 + 242144328 242144368 41 TGTTCCTGGTGGGCTGCTTCCTGGTGTTCTCAGACATACCC TGTTCCTGGTGGGCTGCTTCCTGTTGTTCTCAGACATACCC < 41bp 0.720418148018463 0.336659041959727 0.19533303 0.07280302 prediction 0.440836296036926 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242144348 chr2:242144351 nonsynonymous SNV 0.994 0 24 hm5C_associated_SNPs_81624 0 0 0 0 1 ANO7 chr2:242144370 5'GT 242144370 Upstream 20bp
chr1 36054136 36054136 1 + G A rs138447850 36054133 + 36054113 36054153 41 GAGTGCCTCAACGCCTCCCTCCTGGGGGGTGTCCTCCGCAG GAGTGCCTCAACGCCTCCCTCCTAGGGGGTGTCCTCCGCAG < 41bp 0.720418078246174 0.470611814500799 0.6631732 0.23490441 prediction 0.440836156492349 Functional Loss - TFAP2E ENSG00000116819 CDS Human protein_coding chr1:36054133 chr1:36054136 synonymous SNV . 0 24 hm5C_associated_SNPs_81625 0 0 0 0 1 TFAP2E chr1:36054153 5'GT 36054153 Upstream 18bp
chr8 90801560 90801560 1 + G T LUSC 90801557 + 90801537 90801577 41 TGTATTTTGTAGGAAAAGCTCAAGACTGTTATTTTATGAAG TGTATTTTGTAGGAAAAGCTCAATACTGTTATTTTATGAAG < 41bp 0.720413247630782 0.342329149943755 0.38729858 0.33498323 prediction 0.440826495261563 Functional Loss - RIPK2 ENSG00000104312 CDS Human protein_coding chr8:90801557 chr8:90801560 nonsynonymous SNV 0.270 1 24 hm5C_associated_SNPs_81628 0 0 1 0 1 RIPK2 chr8:90801549 3'AG 90801549 Downstream 12bp
chr20 57896183 57896183 1 + C T GBM 57896180 + 57896160 57896200 41 TCACATCGGCCACACTTGCGCTGCGCTTGTGTGGGGAGATA TCACATCGGCCACACTTGCGCTGTGCTTGTGTGGGGAGATA < 41bp 0.730431172316594 0.510024354486687 0.04220143 0.061631083 prediction 0.440813635659814 Functional Loss - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57896180 chr20:57896183 synonymous SNV . 0 24 hm5C_associated_SNPs_81629 0 0 0 0 1 EDN3 chr20:57896248 5'GT 57896248 Upstream 66bp
chr19 49442781 49442781 1 + C T rs112021846 49442778 + 49442758 49442798 41 CCCAGGGAACTCTAGGAGACCTCCGGGTGGCTCGGGCAGAA CCCAGGGAACTCTAGGAGACCTCTGGGTGGCTCGGGCAGAA < 41bp 0.75718175837997 0.536777214075929 0.8553896 0.7348806 prediction 0.440809088608083 Functional Loss - DHDH ENSG00000104808 CDS Human protein_coding chr19:49442778 chr19:49442781 nonsynonymous SNV 0.952 3 24 hm5C_associated_SNPs_81631 0 0 0 0 1 DHDH chr19:49442706 3'AG 49442706 Downstream 76bp
chrX 150908139 150908139 1 + C T SKCM 150908137 + 150908117 150908157 41 AGCGTTTTCGTGGGCCTGAACTCCAGACTGTGACCACACAG AGCGTTTTCGTGGGCCTGAACTTCAGACTGTGACCACACAG < 41bp 0.872263256822292 0.651859091526533 0.93975043 0.3228069 prediction 0.440808330591518 Functional Loss - CNGA2 ENSG00000183862 CDS Human protein_coding chrX:150908137 chrX:150908139 synonymous SNV . 0 23 hm5C_associated_SNPs_81632 0 0 0 0 1 CNGA2 chrX:150908204 5'GT 150908204 Upstream 66bp
chr1 33149665 33149665 1 - C T HNSC 33149668 - 33149648 33149688 41 CTATGCTACTACCCAAGAGCCTGGAACAGGCTGATGCTCCC CTATGCTACTACCCAAGAGCCTGAAACAGGCTGATGCTCCC < 41bp 0.734713232864227 0.514310244305866 0.4187088 0.19309372 prediction 0.440805977116722 Functional Loss - SYNC ENSG00000162520 CDS Human protein_coding chr1:33149668 chr1:33149665 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_81633 0 0 0 0 2 SYNC chr1:33149611 5'GT 33149611 Upstream 55bp
chr1 33149665 33149665 1 - C T HNSC 33149668 - 33149648 33149688 41 CTATGCTACTACCCAAGAGCCTGGAACAGGCTGATGCTCCC CTATGCTACTACCCAAGAGCCTGAAACAGGCTGATGCTCCC < 41bp 0.734713232864227 0.514310244305866 0.4187088 0.19309372 prediction 0.440805977116722 Functional Loss - SYNC ENSG00000162520 CDS Human protein_coding chr1:33149668 chr1:33149665 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_81633 0 0 0 0 2 SYNC chr1:33149690 3'AG 33149690 Downstream 26bp
chr11 31653890 31653890 1 + C T UCEC 31653887 + 31653867 31653907 41 TTACCAAGTTCCTCTATGTTCTCCGTGGTCTTCTGAGAACC TTACCAAGTTCCTCTATGTTCTCTGTGGTCTTCTGAGAACC < 41bp 0.73974194787418 0.519345619115301 0.043581933 0.03176546 prediction 0.440792657517758 Functional Loss - ELP4 ENSG00000109911 CDS Human protein_coding chr11:31653887 chr11:31653890 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_81634 0 0 0 0 1 ELP4 chr11:31653952 5'GT 31653952 Upstream 63bp
chr16 3117465 3117465 1 + G T SARC 3117463 + 3117443 3117483 41 GGGGTTGGGGGCCTGGGTCTCAGCGTGTGACACTGAGGACA GGGGTTGGGGGCCTGGGTCTCATCGTGTGACACTGAGGACA < 41bp 0.892130271987801 0.671735373332541 0.9292521 0.54106355 prediction 0.44078979731052 Functional Loss - IL32 ENSG00000008517 CDS Human protein_coding chr16:3117463 chr16:3117465 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_81635 0 0 1 0 1 IL32 chr16:3117378 3'AG 3117378 Downstream 88bp
chr7 42976962 42976962 1 + G T LUSC 42976960 + 42976940 42976980 41 CTGAATGTGGTCACCTGAAACAGAAACATGTCCTTTGTGCC CTGAATGTGGTCACCTGAAACATAAACATGTCCTTTGTGCC < 41bp 0.720394104816094 0.392207945844699 0.68498206 0.04554504 prediction 0.440788209632187 Functional Loss - MRPL32 ENSG00000106591 CDS Human protein_coding chr7:42976960 chr7:42976962 nonsynonymous SNV 0.901 1 23 hm5C_associated_SNPs_81637 0 0 1 0 1 MRPL32 chr7:42976921 3'AG 42976921 Downstream 42bp
chr11 71903349 71903349 1 + G A SKCM 71903346 + 71903326 71903366 41 TGCATGAACGCCAAGCACCACAAGGAAAAGCCAGGCCCCGA TGCATGAACGCCAAGCACCACAAAGAAAAGCCAGGCCCCGA < 41bp 0.775788873694072 0.555395221167807 0.25616455 0.07182941 prediction 0.44078730505253 Functional Loss - FOLR1 ENSG00000110195 CDS Human protein_coding chr11:71903346 chr11:71903349 synonymous SNV . 0 24 hm5C_associated_SNPs_81638 0 0 0 0 1 FOLR1 chr11:71903385 5'GT 71903385 Upstream 37bp
chr6 42906384 42906384 1 + G T rs9471969 42906382 + 42906362 42906402 41 AAGAAGTCCAAGAAGAAGAGCAGCAGGGCCAAGGCAGCAGG AAGAAGTCCAAGAAGAAGAGCATCAGGGCCAAGGCAGCAGG < 41bp 0.720393196847124 0.376894706858909 0.75123566 0.6200638 prediction 0.440786393694248 Functional Loss - CNPY3 ENSG00000137161 CDS Human protein_coding chr6:42906382 chr6:42906384 nonsynonymous SNV 0.990 0 23 hm5C_associated_SNPs_81640 0 0 1 0 1 CNPY3 chr6:42906306 3'AG 42906306 Downstream 79bp
chr11 63756170 63756170 1 + G A UCEC 63756167 + 63756147 63756187 41 GTGTCAGAGCGGCTGGAGCTCTCGGTCCTATACAAGGAGTA GTGTCAGAGCGGCTGGAGCTCTCAGTCCTATACAAGGAGTA < 41bp 0.784498207372059 0.564105963261561 0.17657086 0.17670438 prediction 0.440784488220997 Functional Loss - OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63756167 chr11:63756170 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_81641 0 0 1 0 3 OTUB1 chr11:63756099 3'AG 63756099 Downstream 72bp
chr11 63756170 63756170 1 + G A UCEC 63756167 + 63756147 63756187 41 GTGTCAGAGCGGCTGGAGCTCTCGGTCCTATACAAGGAGTA GTGTCAGAGCGGCTGGAGCTCTCAGTCCTATACAAGGAGTA < 41bp 0.784498207372059 0.564105963261561 0.17657086 0.17670438 prediction 0.440784488220997 Functional Loss - OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63756167 chr11:63756170 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_81641 0 0 1 0 3 OTUB1 chr11:63756126 3'AG 63756126 Downstream 45bp
chr11 63756170 63756170 1 + G A UCEC 63756167 + 63756147 63756187 41 GTGTCAGAGCGGCTGGAGCTCTCGGTCCTATACAAGGAGTA GTGTCAGAGCGGCTGGAGCTCTCAGTCCTATACAAGGAGTA < 41bp 0.784498207372059 0.564105963261561 0.17657086 0.17670438 prediction 0.440784488220997 Functional Loss - OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63756167 chr11:63756170 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_81641 0 0 1 0 3 OTUB1 chr11:63756224 5'GT 63756224 Upstream 55bp
chr1 173455477 173455477 1 + C T BLCA 173455475 + 173455455 173455495 41 GCAGGAACTTTGATGAGATTCTCAGGGTAGTCATCTCTCTC GCAGGAACTTTGATGAGATTCTTAGGGTAGTCATCTCTCTC < 41bp 0.85125172751557 0.630882382843962 0.10784772 0.18366942 prediction 0.440738689343215 Functional Loss - PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173455475 chr1:173455477 synonymous SNV . 0 23 hm5C_associated_SNPs_81649 0 0 1 0 2 PRDX6 chr1:173455394 3'AG 173455394 Downstream 84bp
chr1 173455477 173455477 1 + C T BLCA 173455475 + 173455455 173455495 41 GCAGGAACTTTGATGAGATTCTCAGGGTAGTCATCTCTCTC GCAGGAACTTTGATGAGATTCTTAGGGTAGTCATCTCTCTC < 41bp 0.85125172751557 0.630882382843962 0.10784772 0.18366942 prediction 0.440738689343215 Functional Loss - PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173455475 chr1:173455477 synonymous SNV . 0 23 hm5C_associated_SNPs_81649 0 0 1 0 2 PRDX6 chr1:173455540 5'GT 173455540 Upstream 64bp
chr9 131468080 131468080 1 + G T COAD 131468078 + 131468058 131468098 41 CTCGGCACCTAGAGGCTCTCCGGAGGCAGCTGCATGTGGAG CTCGGCACCTAGAGGCTCTCCGTAGGCAGCTGCATGTGGAG < 41bp 0.720367724222013 0.355567482474065 0.92423284 0.7570911 prediction 0.440735448444026 Functional Loss - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131468078 chr9:131468080 synonymous SNV . 0 23 hm5C_associated_SNPs_81653 0 0 1 0 2 PKN3 chr9:131468013 3'AG 131468013 Downstream 68bp
chr9 131468080 131468080 1 + G T COAD 131468078 + 131468058 131468098 41 CTCGGCACCTAGAGGCTCTCCGGAGGCAGCTGCATGTGGAG CTCGGCACCTAGAGGCTCTCCGTAGGCAGCTGCATGTGGAG < 41bp 0.720367724222013 0.355567482474065 0.92423284 0.7570911 prediction 0.440735448444026 Functional Loss - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131468078 chr9:131468080 synonymous SNV . 0 23 hm5C_associated_SNPs_81653 0 0 1 0 2 PKN3 chr9:131468158 5'GT 131468158 Upstream 79bp
chr12 53818674 53818674 1 + G T LUAD 53818672 + 53818652 53818692 41 CTCCTGGCTCCCAGGGTCCCCAGGCTGCCCCAGGTAGCCAC CTCCTGGCTCCCAGGGTCCCCATGCTGCCCCAGGTAGCCAC < 41bp 0.720362581634434 0.352943049978048 0.9154074 0.263245 prediction 0.440725163268868 Functional Loss - AMHR2 ENSG00000135409 CDS Human protein_coding chr12:53818672 chr12:53818674 nonsynonymous SNV 0.690 1 23 hm5C_associated_SNPs_81655 0 0 0 0 1 AMHR2 chr12:53818684 5'GT 53818684 Upstream 11bp
chr16 57718367 57718367 1 + G A LUAD 57718364 + 57718344 57718384 41 GCTACGGCCTCTACACCATCCGTGATAGGGAGAACCGCACC GCTACGGCCTCTACACCATCCGTAATAGGGAGAACCGCACC < 41bp 0.788600524843089 0.568239033706957 0.21183038 0.19144094 prediction 0.440722982272264 Functional Loss - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57718364 chr16:57718367 nonsynonymous SNV 0.064 0 24 hm5C_associated_SNPs_81657 0 0 0 0 2 ADGRG3 chr16:57718302 3'AG 57718302 Downstream 66bp
chr16 57718367 57718367 1 + G A LUAD 57718364 + 57718344 57718384 41 GCTACGGCCTCTACACCATCCGTGATAGGGAGAACCGCACC GCTACGGCCTCTACACCATCCGTAATAGGGAGAACCGCACC < 41bp 0.788600524843089 0.568239033706957 0.21183038 0.19144094 prediction 0.440722982272264 Functional Loss - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57718364 chr16:57718367 nonsynonymous SNV 0.064 0 24 hm5C_associated_SNPs_81657 0 0 0 0 2 ADGRG3 chr16:57718395 5'GT 57718395 Upstream 29bp
chr12 104335645 104335645 1 + C T KIRC 104335643 + 104335623 104335663 41 ATCTCCCCTTGAATGTTTCCCGCGAGACTCTTCAGCAACAT ATCTCCCCTTGAATGTTTCCCGTGAGACTCTTCAGCAACAT < 41bp 0.857578187055038 0.637216769328583 0.058148563 0.018437237 prediction 0.44072283545291 Functional Loss - HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104335643 chr12:104335645 synonymous SNV . 0 23 hm5C_associated_SNPs_81658 0 0 1 0 2 HSP90B1 chr12:104335610 3'AG 104335610 Downstream 36bp
chr12 104335645 104335645 1 + C T KIRC 104335643 + 104335623 104335663 41 ATCTCCCCTTGAATGTTTCCCGCGAGACTCTTCAGCAACAT ATCTCCCCTTGAATGTTTCCCGTGAGACTCTTCAGCAACAT < 41bp 0.857578187055038 0.637216769328583 0.058148563 0.018437237 prediction 0.44072283545291 Functional Loss - HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104335643 chr12:104335645 synonymous SNV . 0 23 hm5C_associated_SNPs_81658 0 0 1 0 2 HSP90B1 chr12:104335675 5'GT 104335675 Upstream 31bp
chr1 200090002 200090002 1 + G A GBM 200089999 + 200089979 200090019 41 ACAACCTCATGAGTCATGCACAGGAGTTAGTGGCAAAACTT ACAACCTCATGAGTCATGCACAGAAGTTAGTGGCAAAACTT < 41bp 0.775710676728362 0.555352684481134 0.8772595 0.4991628 prediction 0.440715984494455 Functional Loss - NR5A2 ENSG00000116833 CDS Human protein_coding chr1:200089999 chr1:200090002 nonsynonymous SNV 0.991 3 24 hm5C_associated_SNPs_81660 0 0 0 0 2 NR5A2 chr1:200089936 3'AG 200089936 Downstream 67bp
chr1 200090002 200090002 1 + G A GBM 200089999 + 200089979 200090019 41 ACAACCTCATGAGTCATGCACAGGAGTTAGTGGCAAAACTT ACAACCTCATGAGTCATGCACAGAAGTTAGTGGCAAAACTT < 41bp 0.775710676728362 0.555352684481134 0.8772595 0.4991628 prediction 0.440715984494455 Functional Loss - NR5A2 ENSG00000116833 CDS Human protein_coding chr1:200089999 chr1:200090002 nonsynonymous SNV 0.991 3 24 hm5C_associated_SNPs_81660 0 0 0 0 2 NR5A2 chr1:200090083 5'GT 200090083 Upstream 82bp
chr3 170110118 170110118 1 + G T ESCA 170110116 + 170110096 170110136 41 AACTCCAAGATGAACTCAGACAGGAACGGGAAGCAAGACAG AACTCCAAGATGAACTCAGACATGAACGGGAAGCAAGACAG < 41bp 0.87860938361733 0.658256326752084 0.34406984 0.105223775 prediction 0.440706113730492 Functional Loss - SKIL ENSG00000136603 CDS Human protein_coding chr3:170110116 chr3:170110118 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_81664 0 0 1 0 1 SKIL chr3:170110047 3'AG 170110047 Downstream 72bp
chr1 150476838 150476838 1 + G A KIRC 150476835 + 150476815 150476855 41 ACGTGCACCTCCACGATGCCCTGGGCCGGCCACATCAGTGT ACGTGCACCTCCACGATGCCCTGAGCCGGCCACATCAGTGT < 41bp 0.80030865666362 0.579960622827638 0.13322994 0.05293438 prediction 0.440696067671964 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150476835 chr1:150476838 nonsynonymous SNV 0.880 3 24 hm5C_associated_SNPs_81665 0 0 1 0 2 TARS2 chr1:150476811 3'AG 150476811 Downstream 28bp
chr1 150476838 150476838 1 + G A KIRC 150476835 + 150476815 150476855 41 ACGTGCACCTCCACGATGCCCTGGGCCGGCCACATCAGTGT ACGTGCACCTCCACGATGCCCTGAGCCGGCCACATCAGTGT < 41bp 0.80030865666362 0.579960622827638 0.13322994 0.05293438 prediction 0.440696067671964 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150476835 chr1:150476838 nonsynonymous SNV 0.880 3 24 hm5C_associated_SNPs_81665 0 0 1 0 2 TARS2 chr1:150476911 5'GT 150476911 Upstream 74bp
chr5 137721848 137721848 1 + G T UCEC 137721845 + 137721825 137721865 41 TCAAAGAAATTAAAAGGAGACAGGGGTGAAGTAGACAGTAA TCAAAGAAATTAAAAGGAGACAGTGGTGAAGTAGACAGTAA < 41bp 0.720347820323105 0.331041536162861 0.88804936 0.22470337 prediction 0.44069564064621 Functional Loss - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137721845 chr5:137721848 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_81666 0 0 1 0 1 KDM3B chr5:137721879 5'GT 137721879 Upstream 32bp
chr1 171073058 171073058 1 + G A SKCM 171073055 + 171073035 171073075 41 TTATGCACAACAGCAAGATCCAGGAATATATCATTGCATTT TTATGCACAACAGCAAGATCCAGAAATATATCATTGCATTT < 41bp 0.766085451466364 0.545738890763972 0.42140627 0.11200312 prediction 0.440693121404784 Functional Loss - FMO3 ENSG00000007933 CDS Human protein_coding chr1:171073055 chr1:171073058 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_81667 0 0 0 0 1 FMO3 chr1:171073114 5'GT 171073114 Upstream 57bp
chr20 62505057 62505057 1 + G A UCEC 62505054 + 62505034 62505074 41 TTGTCACTCTGCGCCAGGTCCTGGCAGCCAAGGAGAGGCAC TTGTCACTCTGCGCCAGGTCCTGACAGCCAAGGAGAGGCAC < 41bp 0.772126115422824 0.551779573867166 0.3523919 0.27855718 prediction 0.440693083111316 Functional Loss - TPD52L2 ENSG00000101150 CDS Human protein_coding chr20:62505054 chr20:62505057 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_81668 0 0 1 0 1 TPD52L2 chr20:62505021 3'AG 62505021 Downstream 37bp
chr15 58840744 58840744 1 + G A UCEC 58840741 + 58840721 58840761 41 GCAAGAGCAAGAGGCTCTTCCTCGTAACGCGAGCCCAGTCC GCAAGAGCAAGAGGCTCTTCCTCATAACGCGAGCCCAGTCC < 41bp 0.803228354207051 0.58288551866881 0.15986833 0.09421402 prediction 0.440685671076481 Functional Loss - LIPC ENSG00000166035 CDS Human protein_coding chr15:58840741 chr15:58840744 nonsynonymous SNV 0.666 1 24 hm5C_associated_SNPs_81672 0 0 1 0 1 LIPC chr15:58840771 5'GT 58840771 Upstream 28bp
chr7 27186967 27186967 1 + G A rs147820248 27186964 + 27186944 27186984 41 CGCTGCATCCAAGGGTAAACCGGGCTCGTGTACTTCCGGTC CGCTGCATCCAAGGGTAAACCGGACTCGTGTACTTCCGGTC < 41bp 0.803973033803945 0.583632524481702 0.8889287 0.42011485 prediction 0.440681018644486 Functional Loss - HOXA6 ENSG00000106006 CDS Human protein_coding chr7:27186964 chr7:27186967 synonymous SNV . 0 24 hm5C_associated_SNPs_81674 0 0 0 0 1 HOXA6 chr7:27187031 5'GT 27187031 Upstream 65bp
chr19 4359199 4359199 1 + G A rs79831308 4359196 + 4359176 4359216 41 TCTACAAGGGTTCCCCTGACCTCGTGAGGCTCCAGGAACCC TCTACAAGGGTTCCCCTGACCTCATGAGGCTCCAGGAACCC < 41bp 0.781427251776325 0.561087044521527 0.17250803 0.0998483 prediction 0.440680414509595 Functional Loss - MPND ENSG00000008382 CDS Human protein_coding chr19:4359196 chr19:4359199 nonsynonymous SNV 0.929 1 24 hm5C_associated_SNPs_81675 0 0 1 0 1 MPND chr19:4359160 3'AG 4359160 Downstream 40bp
chr1 207793355 207793355 1 + G A SKCM 207793352 + 207793332 207793372 41 TATACTCTGGAAGGCAGTCCCTGGAGCCAGTGCCAGGCGGA TATACTCTGGAAGGCAGTCCCTGAAGCCAGTGCCAGGCGGA < 41bp 0.763090382885906 0.542753529011994 0.8793058 0.4380094 prediction 0.440673707747823 Functional Loss - CR1 ENSG00000203710 CDS Human protein_coding chr1:207793352 chr1:207793355 stopgain 0.578 0 24 hm5C_associated_SNPs_81678 0 0 0 0 1 CR1 chr1:207793410 5'GT 207793410 Upstream 56bp
chr11 86123500 86123500 1 + G A SKCM 86123497 + 86123477 86123517 41 CTTAAGCAAGAGGAATATTCCCGGAGTCTCCTGAAACAAAT CTTAAGCAAGAGGAATATTCCCGAAGTCTCCTGAAACAAAT < 41bp 0.724121208881904 0.503792740627349 0.4549508 0.06937453 prediction 0.440656936509111 Functional Loss - CCDC81 ENSG00000149201 CDS Human protein_coding chr11:86123497 chr11:86123500 synonymous SNV . 0 24 hm5C_associated_SNPs_81682 0 0 1 0 1 CCDC81 chr11:86123429 3'AG 86123429 Downstream 72bp
chr1 1117187 1117187 1 + G T SARC 1117184 + 1117164 1117204 41 TGGACAAGCCCAGGATACCTCAGGCCACAGAGGTAGACTCA TGGACAAGCCCAGGATACCTCAGTCCACAGAGGTAGACTCA < 41bp 0.720327348703389 0.323202324111251 0.9017885 0.8642858 prediction 0.440654697406778 Functional Loss - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1117184 chr1:1117187 nonsynonymous SNV 0.173 0 24 hm5C_associated_SNPs_81683 0 0 0 0 2 TTLL10 chr1:1117121 3'AG 1117121 Downstream 67bp
chr1 1117187 1117187 1 + G T SARC 1117184 + 1117164 1117204 41 TGGACAAGCCCAGGATACCTCAGGCCACAGAGGTAGACTCA TGGACAAGCCCAGGATACCTCAGTCCACAGAGGTAGACTCA < 41bp 0.720327348703389 0.323202324111251 0.9017885 0.8642858 prediction 0.440654697406778 Functional Loss - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1117184 chr1:1117187 nonsynonymous SNV 0.173 0 24 hm5C_associated_SNPs_81683 0 0 0 0 2 TTLL10 chr1:1117195 5'GT 1117195 Upstream 9bp
chr1 82434943 82434943 1 + T C LIHC 82434942 + 82434922 82434962 41 TCCCTTGTTTGCCTGGCTATCTGCATCTTCACCTTCTGCTT TCCCTTGTTTGCCTGGCTATCCGCATCTTCACCTTCTGCTT < 41bp 0.799903344012958 0.579578771126514 0.07237673 0.074209124 prediction 0.440649145772888 Functional Loss - ADGRL2 ENSG00000117114 CDS Human protein_coding chr1:82434942 chr1:82434943 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_81684 0 0 1 0 1 ADGRL2 chr1:82434862 3'AG 82434862 Downstream 82bp
chr3 28562499 28562499 1 + A C COAD 28562495 + 28562475 28562515 41 TTTTTTAGTTGTCTGTGAGACGGAAGTTTTACTAAAAGAGC TTTTTTAGTTGTCTGTGAGACGGACGTTTTACTAAAAGAGC < 41bp 0.720323386439648 0.335831720035239 0.097393304 0.07887992 prediction 0.440646772879296 Functional Loss - ZCWPW2 ENSG00000206559 CDS Human protein_coding chr3:28562495 chr3:28562499 nonsynonymous SNV 0.867 3 25 hm5C_associated_SNPs_81685 0 0 0 0 1 ZCWPW2 chr3:28562483 3'AG 28562483 Downstream 17bp
chr13 43155353 43155353 1 + T C UCEC 43155352 + 43155332 43155372 41 CAGATTTTCAAGACACAACTCTGGAGAGTCAAGATACAAAA CAGATTTTCAAGACACAACTCCGGAGAGTCAAGATACAAAA < 41bp 0.794779717251578 0.574467486925049 0.08381483 0.23285753 prediction 0.44062446065306 Functional Loss - TNFSF11 ENSG00000120659 CDS Human protein_coding chr13:43155352 chr13:43155353 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_81689 0 0 0 0 2 TNFSF11 chr13:43155262 3'AG 43155262 Downstream 92bp
chr13 43155353 43155353 1 + T C UCEC 43155352 + 43155332 43155372 41 CAGATTTTCAAGACACAACTCTGGAGAGTCAAGATACAAAA CAGATTTTCAAGACACAACTCCGGAGAGTCAAGATACAAAA < 41bp 0.794779717251578 0.574467486925049 0.08381483 0.23285753 prediction 0.44062446065306 Functional Loss - TNFSF11 ENSG00000120659 CDS Human protein_coding chr13:43155352 chr13:43155353 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_81689 0 0 0 0 2 TNFSF11 chr13:43155429 5'GT 43155429 Upstream 77bp
chr5 135388740 135388740 1 + C T SKCM 135388738 + 135388718 135388758 41 ATCAACGGGAAGGCGATCATCTCCAATAAAGACATCCTAGC ATCAACGGGAAGGCGATCATCTTCAATAAAGACATCCTAGC < 41bp 0.876519482968709 0.656207729702846 0.9762503 0.5205416 prediction 0.440623506531726 Functional Loss - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135388738 chr5:135388740 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_81690 0 0 1 0 1 TGFBI chr5:135388808 5'GT 135388808 Upstream 69bp
chr1 53927253 53927253 1 + C T ESCA 53927251 + 53927231 53927271 41 GCTGGGCTACCTGGACGCCCCTCCTGGCGTCCCCCTGCAGC GCTGGGCTACCTGGACGCCCCTTCTGGCGTCCCCCTGCAGC < 41bp 0.720310264927395 0.457037687693018 0.11942166 0.11970413 prediction 0.440620529854791 Functional Loss - DMRTB1 ENSG00000143006 CDS Human protein_coding chr1:53927251 chr1:53927253 nonsynonymous SNV 0.009 0 23 hm5C_associated_SNPs_81693 0 0 0 0 1 DMRTB1 chr1:53927318 5'GT 53927318 Upstream 66bp
chr3 156745934 156745934 1 + G A SKCM 156745931 + 156745911 156745951 41 GCGCTACAAGAGATCTAAGGCAGGAAGTGACCACTCTTAAA GCGCTACAAGAGATCTAAGGCAGAAAGTGACCACTCTTAAA < 41bp 0.739481449460363 0.519171670759583 0.5034627 0.20699835 prediction 0.440619557401561 Functional Loss - LEKR1 ENSG00000197980 CDS Human protein_coding chr3:156745931 chr3:156745934 nonsynonymous SNV 0.975 1 24 hm5C_associated_SNPs_81695 0 0 0 0 1 LEKR1 chr3:156745892 3'AG 156745892 Downstream 43bp
chr21 42812934 42812934 1 + G A GBM 42812931 + 42812911 42812951 41 GCATGGCCCAGGAGGTGGACCCCGAGGGAGACAGGACCATC GCATGGCCCAGGAGGTGGACCCCAAGGGAGACAGGACCATC < 41bp 0.794363294891812 0.574056272276901 0.38589483 0.2679083 prediction 0.440614045229823 Functional Loss - MX1 ENSG00000157601 CDS Human protein_coding chr21:42812931 chr21:42812934 nonsynonymous SNV 0.912 1 24 hm5C_associated_SNPs_81696 0 0 0 0 1 MX1 chr21:42812952 5'GT 42812952 Upstream 19bp
chr12 104378601 104378601 1 + C T rs4135120 104378598 + 104378578 104378618 41 GCCCAAGACAAAGTTCATTACTACATAAAACTGAAGGACTT GCCCAAGACAAAGTTCATTACTATATAAAACTGAAGGACTT < 41bp 0.758298399348552 0.537991503256318 0.926463 0.8769274 prediction 0.440613792184468 Functional Loss - TDG ENSG00000139372 CDS Human protein_coding chr12:104378598 chr12:104378601 synonymous SNV . 0 24 hm5C_associated_SNPs_81698 0 0 1 0 2 TDG chr12:104378527 3'AG 104378527 Downstream 75bp
chr12 104378601 104378601 1 + C T rs4135120 104378598 + 104378578 104378618 41 GCCCAAGACAAAGTTCATTACTACATAAAACTGAAGGACTT GCCCAAGACAAAGTTCATTACTATATAAAACTGAAGGACTT < 41bp 0.758298399348552 0.537991503256318 0.926463 0.8769274 prediction 0.440613792184468 Functional Loss - TDG ENSG00000139372 CDS Human protein_coding chr12:104378598 chr12:104378601 synonymous SNV . 0 24 hm5C_associated_SNPs_81698 0 0 1 0 2 TDG chr12:104378698 5'GT 104378698 Upstream 98bp
chr1 32793212 32793212 1 + G A COAD 32793209 + 32793189 32793229 41 GTGGAAGAGGCCTTCTACACCACGGACCGGGTCATGACTGT GTGGAAGAGGCCTTCTACACCACAGACCGGGTCATGACTGT < 41bp 0.739354333849642 0.519055183233647 0.022094488 0.005214095 prediction 0.44059830123199 Functional Loss - HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32793209 chr1:32793212 synonymous SNV . 0 24 hm5C_associated_SNPs_81701 0 0 1 0 2 HDAC1 chr1:32793137 3'AG 32793137 Downstream 76bp
chr1 32793212 32793212 1 + G A COAD 32793209 + 32793189 32793229 41 GTGGAAGAGGCCTTCTACACCACGGACCGGGTCATGACTGT GTGGAAGAGGCCTTCTACACCACAGACCGGGTCATGACTGT < 41bp 0.739354333849642 0.519055183233647 0.022094488 0.005214095 prediction 0.44059830123199 Functional Loss - HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32793209 chr1:32793212 synonymous SNV . 0 24 hm5C_associated_SNPs_81701 0 0 1 0 2 HDAC1 chr1:32793278 5'GT 32793278 Upstream 67bp
chr7 94917905 94917905 1 + G A LUSC 94917902 + 94917882 94917922 41 AGTGTCAGAATCGGGCCGTTCAGGAATGGAGTGTGCAGCAG AGTGTCAGAATCGGGCCGTTCAGAAATGGAGTGTGCAGCAG < 41bp 0.728822845002393 0.508528094606826 0.6655432 0.1974391 prediction 0.440589500791134 Functional Loss - PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917902 chr7:94917905 nonsynonymous SNV 0.459 3 24 hm5C_associated_SNPs_81703 0 0 1 0 1 PPP1R9A chr7:94917848 3'AG 94917848 Downstream 58bp
chr17 79502118 79502118 1 + C T UCEC 79502116 + 79502096 79502136 41 ATCAGGATGATGAACTAGACCACGAGACCTTCCTGATGCAA ATCAGGATGATGAACTAGACCATGAGACCTTCCTGATGCAA < 41bp 0.847758373379537 0.627464963817078 0.04727298 0.055771828 prediction 0.440586819124917 Functional Loss - FSCN2 ENSG00000186765 CDS Human protein_coding chr17:79502116 chr17:79502118 synonymous SNV . 0 23 hm5C_associated_SNPs_81704 0 0 0 0 1 FSCN2 chr17:79502078 3'AG 79502078 Downstream 41bp
chrX 149931131 149931131 1 + G A CESC 149931128 + 149931108 149931148 41 TACAGCGGGAGGTGGCCACGCGCGCCGTCTCATCCTCATCT TACAGCGGGAGGTGGCCACGCGCACCGTCTCATCCTCATCT < 41bp 0.720291407570582 0.481161539937092 0.8126929 0.429318 prediction 0.440582815141164 Functional Loss - MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149931128 chrX:149931131 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_81707 0 0 0 0 2 MTMR1 chrX:149931038 3'AG 149931038 Downstream 94bp
chrX 149931131 149931131 1 + G A CESC 149931128 + 149931108 149931148 41 TACAGCGGGAGGTGGCCACGCGCGCCGTCTCATCCTCATCT TACAGCGGGAGGTGGCCACGCGCACCGTCTCATCCTCATCT < 41bp 0.720291407570582 0.481161539937092 0.8126929 0.429318 prediction 0.440582815141164 Functional Loss - MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149931128 chrX:149931131 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_81707 0 0 0 0 2 MTMR1 chrX:149931210 5'GT 149931210 Upstream 80bp
chr19 17985509 17985509 1 + C T UCEC 17985507 + 17985487 17985527 41 ATCTGGGCGTCGCTCCTGTCCACCGGAATTATCTGCACCTT ATCTGGGCGTCGCTCCTGTCCATCGGAATTATCTGCACCTT < 41bp 0.720290168646705 0.443008934594461 0.3206908 0.29241246 prediction 0.44058033729341 Functional Loss - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17985507 chr19:17985509 nonsynonymous SNV 0.696 2 23 hm5C_associated_SNPs_81708 0 0 0 0 2 SLC5A5 chr19:17985473 3'AG 17985473 Downstream 37bp
chr19 17985509 17985509 1 + C T UCEC 17985507 + 17985487 17985527 41 ATCTGGGCGTCGCTCCTGTCCACCGGAATTATCTGCACCTT ATCTGGGCGTCGCTCCTGTCCATCGGAATTATCTGCACCTT < 41bp 0.720290168646705 0.443008934594461 0.3206908 0.29241246 prediction 0.44058033729341 Functional Loss - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17985507 chr19:17985509 nonsynonymous SNV 0.696 2 23 hm5C_associated_SNPs_81708 0 0 0 0 2 SLC5A5 chr19:17985540 5'GT 17985540 Upstream 32bp
chr19 2807713 2807713 1 + C T SKCM 2807711 + 2807691 2807731 41 GCCTTCCACCACGAGGAGGGCGCCAGTGCCTGGCATGAGGA GCCTTCCACCACGAGGAGGGCGTCAGTGCCTGGCATGAGGA < 41bp 0.834731424465439 0.614442661911617 0.89568126 0.8064752 prediction 0.440577525107642 Functional Loss - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2807711 chr19:2807713 nonsynonymous SNV 0.145 0 23 hm5C_associated_SNPs_81709 0 0 1 0 1 THOP1 chr19:2807806 5'GT 2807806 Upstream 94bp
chr1 241907706 241907706 1 + C T rs41310585 241907704 + 241907684 241907724 41 CTTTCCCATAGGTATGGGAACTCGAGACTGGGCTCCAAGTA CTTTCCCATAGGTATGGGAACTTGAGACTGGGCTCCAAGTA < 41bp 0.720285871102974 0.423213513742534 0.7355288 0.2663809 prediction 0.440571742205949 Functional Loss - WDR64 ENSG00000162843 CDS Human protein_coding chr1:241907704 chr1:241907706 synonymous SNV . 0 23 hm5C_associated_SNPs_81712 0 0 0 0 1 WDR64 chr1:241907695 3'AG 241907695 Downstream 12bp
chr3 49744279 49744279 1 + T C UCEC 49744278 + 49744258 49744298 41 AGAAGGTTTTCTCAGAAAAGCTGGACCACCTGAGCCGCCGT AGAAGGTTTTCTCAGAAAAGCCGGACCACCTGAGCCGCCGT < 41bp 0.720280854082216 0.463050011974265 0.8722446 0.5508135 prediction 0.440561708164432 Functional Loss - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49744278 chr3:49744279 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_81716 0 0 1 0 2 RNF123 chr3:49744224 3'AG 49744224 Downstream 56bp
chr3 49744279 49744279 1 + T C UCEC 49744278 + 49744258 49744298 41 AGAAGGTTTTCTCAGAAAAGCTGGACCACCTGAGCCGCCGT AGAAGGTTTTCTCAGAAAAGCCGGACCACCTGAGCCGCCGT < 41bp 0.720280854082216 0.463050011974265 0.8722446 0.5508135 prediction 0.440561708164432 Functional Loss - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49744278 chr3:49744279 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_81716 0 0 1 0 2 RNF123 chr3:49744331 5'GT 49744331 Upstream 53bp
chr5 68414415 68414415 1 + G A KIRC 68414412 + 68414392 68414432 41 TGTGTTTATGGAGTCAGTGGCTAGATTGATTGATCCTCCAG TGTGTTTATGGAGTCAGTGGCTAAATTGATTGATCCTCCAG < 41bp 0.740347596687761 0.520068749841812 0.24685007 0.09287739 prediction 0.440557693691899 Functional Loss - SLC30A5 ENSG00000145740 CDS Human protein_coding chr5:68414412 chr5:68414415 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_81719 0 0 1 0 2 SLC30A5 chr5:68414326 3'AG 68414326 Downstream 90bp
chr5 68414415 68414415 1 + G A KIRC 68414412 + 68414392 68414432 41 TGTGTTTATGGAGTCAGTGGCTAGATTGATTGATCCTCCAG TGTGTTTATGGAGTCAGTGGCTAAATTGATTGATCCTCCAG < 41bp 0.740347596687761 0.520068749841812 0.24685007 0.09287739 prediction 0.440557693691899 Functional Loss - SLC30A5 ENSG00000145740 CDS Human protein_coding chr5:68414412 chr5:68414415 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_81719 0 0 1 0 2 SLC30A5 chr5:68414455 5'GT 68414455 Upstream 41bp
chr16 20856413 20856413 1 + C T rs140836762 20856410 + 20856390 20856430 41 GGCAGTGCCCAGCAGGCCCTCAACATTCTCACAGGCAAGGA GGCAGTGCCCAGCAGGCCCTCAATATTCTCACAGGCAAGGA < 41bp 0.73350991881638 0.513231328679631 0.2784375 0.41881496 prediction 0.440557180273496 Functional Loss - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20856410 chr16:20856413 synonymous SNV . 0 24 hm5C_associated_SNPs_81720 0 0 1 0 1 REXO5 chr16:20856376 3'AG 20856376 Downstream 38bp
chr1 226413239 226413239 1 + G A UCEC 226413236 + 226413216 226413256 41 CCAGAACAGGCGTGCCAAGTCTCGGCGTCAGAGTGGGAAAT CCAGAACAGGCGTGCCAAGTCTCAGCGTCAGAGTGGGAAAT < 41bp 0.786328628270735 0.56605165829576 0.25270152 0.09888342 prediction 0.440553939949949 Functional Loss - MIXL1 ENSG00000185155 CDS Human protein_coding chr1:226413236 chr1:226413239 nonsynonymous SNV 0.010 4 24 hm5C_associated_SNPs_81723 0 0 0 0 1 MIXL1 chr1:226413208 3'AG 226413208 Downstream 32bp
chr3 186435512 186435512 1 + G T UCEC 186435510 + 186435490 186435530 41 GTTTGTATTGTACCGCATAACTGAAGCCACTAAGACGGTGA GTTTGTATTGTACCGCATAACTTAAGCCACTAAGACGGTGA < 41bp 0.720271621195808 0.396175797870826 0.099428594 0.018542528 prediction 0.440543242391616 Functional Loss - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186435510 chr3:186435512 stopgain 0.002 0 23 hm5C_associated_SNPs_81727 0 0 0 0 1 KNG1 chr3:186435526 5'GT 186435526 Upstream 15bp
chr19 12923928 12923928 1 + C T COAD 12923926 + 12923906 12923946 41 CAAAAGCGTGGTTGAAGGAGCACGTGGAGCCTGTGTTCGGC CAAAAGCGTGGTTGAAGGAGCATGTGGAGCCTGTGTTCGGC < 41bp 0.720269418017952 0.453088817559552 0.19057766 0.25990278 prediction 0.440538836035905 Functional Loss - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12923926 chr19:12923928 synonymous SNV . 0 23 hm5C_associated_SNPs_81728 0 0 1 0 2 RNASEH2A chr19:12923897 3'AG 12923897 Downstream 32bp
chr19 12923928 12923928 1 + C T COAD 12923926 + 12923906 12923946 41 CAAAAGCGTGGTTGAAGGAGCACGTGGAGCCTGTGTTCGGC CAAAAGCGTGGTTGAAGGAGCATGTGGAGCCTGTGTTCGGC < 41bp 0.720269418017952 0.453088817559552 0.19057766 0.25990278 prediction 0.440538836035905 Functional Loss - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12923926 chr19:12923928 synonymous SNV . 0 23 hm5C_associated_SNPs_81728 0 0 1 0 2 RNASEH2A chr19:12924020 5'GT 12924020 Upstream 93bp
chr3 52836433 52836433 1 + G T COAD 52836431 + 52836411 52836451 41 ACGCTATCCTGGACCTCACCCAGAACACTTACCAGCACTTC ACGCTATCCTGGACCTCACCCATAACACTTACCAGCACTTC < 41bp 0.720266155477439 0.355358756156548 0.7368021 0.13603246 prediction 0.440532310954877 Functional Loss - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52836431 chr3:52836433 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_81731 0 0 1 0 1 ITIH3 chr3:52836350 3'AG 52836350 Downstream 84bp
chr20 25229006 25229006 1 + C T BLCA 25229004 + 25228984 25229024 41 CGCACACGGTGCGCGACCACCTCGTGGGCCGCTGGATCCGC CGCACACGGTGCGCGACCACCTTGTGGGCCGCTGGATCCGC < 41bp 0.800540372872473 0.580274774218911 0.40068623 0.23516229 prediction 0.440531197307124 Functional Loss - PYGB ENSG00000100994 CDS Human protein_coding chr20:25229004 chr20:25229006 synonymous SNV . 0 23 hm5C_associated_SNPs_81732 0 0 1 0 1 PYGB chr20:25229057 5'GT 25229057 Upstream 52bp
chr19 3281241 3281241 1 + G A KIRC 3281238 + 3281218 3281258 41 GTCAAGTTCGCCGACACGGACAAGGAGCGGACGCTCCGGCG GTCAAGTTCGCCGACACGGACAAAGAGCGGACGCTCCGGCG < 41bp 0.809493214202469 0.589229039440094 0.881639 0.3996886 prediction 0.440528349524749 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3281238 chr19:3281241 synonymous SNV . 0 24 hm5C_associated_SNPs_81733 0 0 0 0 1 CELF5 chr19:3281197 3'AG 3281197 Downstream 45bp
chr17 59445833 59445833 1 + G T LUAD 59445831 + 59445811 59445851 41 CCATGGCCGAGTCACCTAGCCGGGACGTCGTGGGATCCGGA CCATGGCCGAGTCACCTAGCCGTGACGTCGTGGGATCCGGA < 41bp 0.720263170916015 0.409800316192588 0.8561018 0.13146886 prediction 0.44052634183203 Functional Loss - BCAS3 ENSG00000141376 CDS Human protein_coding chr17:59445831 chr17:59445833 synonymous SNV . 0 23 hm5C_associated_SNPs_81734 0 0 0 1 1 BCAS3 chr17:59445855 5'GT 59445855 Upstream 23bp
chr16 31234164 31234164 1 + G T PRAD 31234161 + 31234141 31234181 41 CCCCCAGGCTGCAGAAGATCCTGGCAGAGTCTCCCCCACCC CCCCCAGGCTGCAGAAGATCCTGTCAGAGTCTCCCCCACCC < 41bp 0.720261961818054 0.315288132534797 0.76639634 0.03814411 prediction 0.440523923636109 Functional Loss - TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31234161 chr16:31234164 nonsynonymous SNV 0.979 0 24 hm5C_associated_SNPs_81736 0 0 1 0 1 TRIM72 chr16:31234148 3'AG 31234148 Downstream 17bp
chr2 216198161 216198161 1 + G C PRAD 216198160 + 216198140 216198180 41 AACCCTCACACCCATCTCAGCGGCATATGCAAGAGCAAGAG AACCCTCACACCCATCTCAGCCGCATATGCAAGAGCAAGAG < 41bp 0.72025905797004 0.391191969150655 0.24919653 0.1895831 prediction 0.44051811594008 Functional Loss - ATIC ENSG00000138363 CDS Human protein_coding chr2:216198160 chr2:216198161 synonymous SNV . 0 22 hm5C_associated_SNPs_81737 0 0 1 0 2 ATIC chr2:216198073 3'AG 216198073 Downstream 89bp
chr2 216198161 216198161 1 + G C PRAD 216198160 + 216198140 216198180 41 AACCCTCACACCCATCTCAGCGGCATATGCAAGAGCAAGAG AACCCTCACACCCATCTCAGCCGCATATGCAAGAGCAAGAG < 41bp 0.72025905797004 0.391191969150655 0.24919653 0.1895831 prediction 0.44051811594008 Functional Loss - ATIC ENSG00000138363 CDS Human protein_coding chr2:216198160 chr2:216198161 synonymous SNV . 0 22 hm5C_associated_SNPs_81737 0 0 1 0 2 ATIC chr2:216198180 5'GT 216198180 Upstream 20bp
chr1 206653406 206653406 1 + G T READ 206653404 + 206653384 206653424 41 ACCAGGCCCTGCGGCTGGCACGGGCCCTGCTGGATGGGCAG ACCAGGCCCTGCGGCTGGCACGTGCCCTGCTGGATGGGCAG < 41bp 0.720256565240629 0.348028152426427 0.9130057 0.50660706 prediction 0.440513130481258 Functional Loss - IKBKE ENSG00000143466 CDS Human other chr1:206653404 chr1:206653406 synonymous SNV . 0 23 hm5C_associated_SNPs_81739 0 0 0 0 2 IKBKE chr1:206653365 3'AG 206653365 Downstream 42bp
chr1 206653406 206653406 1 + G T READ 206653404 + 206653384 206653424 41 ACCAGGCCCTGCGGCTGGCACGGGCCCTGCTGGATGGGCAG ACCAGGCCCTGCGGCTGGCACGTGCCCTGCTGGATGGGCAG < 41bp 0.720256565240629 0.348028152426427 0.9130057 0.50660706 prediction 0.440513130481258 Functional Loss - IKBKE ENSG00000143466 CDS Human other chr1:206653404 chr1:206653406 synonymous SNV . 0 23 hm5C_associated_SNPs_81739 0 0 0 0 2 IKBKE chr1:206653456 5'GT 206653456 Upstream 51bp
chr8 9588487 9588487 1 + G A HNSC 9588484 + 9588464 9588504 41 ACTTCGCAGCAGGCTACAACCGCGTGTCTGTTGTAGAGTAC ACTTCGCAGCAGGCTACAACCGCATGTCTGTTGTAGAGTAC < 41bp 0.773003765617128 0.552749405530771 0.6931753 0.32726455 prediction 0.440508720172713 Functional Loss - TNKS ENSG00000173273 CDS Human protein_coding chr8:9588484 chr8:9588487 nonsynonymous SNV 0.954 3 24 hm5C_associated_SNPs_81741 0 0 1 0 1 TNKS chr8:9588400 3'AG 9588400 Downstream 88bp
chr2 66794600 66794600 1 + G T rs146143511 66794597 + 66794577 66794617 41 GGTTACAGGTTTATTAATGCCCGGAGAAGAATAGTGCAGCC GGTTACAGGTTTATTAATGCCCGTAGAAGAATAGTGCAGCC < 41bp 0.720253812863332 0.350193365086219 0.28736863 0.12279618 prediction 0.440507625726665 Functional Loss - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66794597 chr2:66794600 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_81743 0 0 0 0 1 MEIS1 chr2:66794585 3'AG 66794585 Downstream 16bp
chr17 40724977 40724977 1 - G A rs149275413 40724979 - 40724959 40724999 41 TCCCAGACCCCTGAGGGGCCCACGGTCAGGACTGGTGGGGA TCCCAGACCCCTGAGGGGCCCATGGTCAGGACTGGTGGGGA < 41bp 0.793889237366722 0.573636132981312 0.24708536 0.22968322 prediction 0.440506208770821 Functional Loss - MLX;PSMC3IP ENSG00000108788;ENSG00000131470 UTR3 Human protein_coding chr17:40724979 chr17:40724977 . . 0 23 hm5C_associated_SNPs_81744 0 0 1 0 1 PSMC3IP chr17:40725042 3'AG 40725042 Downstream 66bp
chr20 36992686 36992686 1 + G A STAD 36992683 + 36992663 36992703 41 TTATAGCTTAGTGGAAGCCCCTCGGGCAACAGCCCAGATGC TTATAGCTTAGTGGAAGCCCCTCAGGCAACAGCCCAGATGC < 41bp 0.815599423602432 0.595349680555789 0.3717088 0.18342808 prediction 0.440499486093286 Functional Loss - LBP ENSG00000129988 CDS Human protein_coding chr20:36992683 chr20:36992686 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_81746 0 0 0 0 2 LBP chr20:36992629 3'AG 36992629 Downstream 58bp
chr20 36992686 36992686 1 + G A STAD 36992683 + 36992663 36992703 41 TTATAGCTTAGTGGAAGCCCCTCGGGCAACAGCCCAGATGC TTATAGCTTAGTGGAAGCCCCTCAGGCAACAGCCCAGATGC < 41bp 0.815599423602432 0.595349680555789 0.3717088 0.18342808 prediction 0.440499486093286 Functional Loss - LBP ENSG00000129988 CDS Human protein_coding chr20:36992683 chr20:36992686 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_81746 0 0 0 0 2 LBP chr20:36992720 5'GT 36992720 Upstream 35bp
chr11 71711546 71711546 1 + G T rs199903534 71711544 + 71711524 71711564 41 CTCCCAGCCCCCAGTGTTCCCAGCAGCTAAGCAGTGTCCAG CTCCCAGCCCCCAGTGTTCCCATCAGCTAAGCAGTGTCCAG < 41bp 0.913607874686733 0.693358764834651 0.53135437 0.19567636 prediction 0.440498219704164 Functional Loss - IL18BP ENSG00000137496 CDS Human protein_coding chr11:71711544 chr11:71711546 nonsynonymous SNV 0.010 0 23 hm5C_associated_SNPs_81747 0 0 1 0 1 IL18BP chr11:71711603 5'GT 71711603 Upstream 58bp
chr2 39931240 39931240 1 + G A UCEC 39931237 + 39931217 39931257 41 CAAGGTATTGCGCAGCGATGCACGGCCATCAAGTACCACTT CAAGGTATTGCGCAGCGATGCACAGCCATCAAGTACCACTT < 41bp 0.789135087140074 0.568886002005018 0.03042093 0.0061742365 prediction 0.440498170270113 Functional Loss - TMEM178A ENSG00000152154 CDS Human protein_coding chr2:39931237 chr2:39931240 synonymous SNV 0.993 0 24 hm5C_associated_SNPs_81748 0 0 0 0 2 TMEM178A chr2:39931221 3'AG 39931221 Downstream 20bp
chr2 39931240 39931240 1 + G A UCEC 39931237 + 39931217 39931257 41 CAAGGTATTGCGCAGCGATGCACGGCCATCAAGTACCACTT CAAGGTATTGCGCAGCGATGCACAGCCATCAAGTACCACTT < 41bp 0.789135087140074 0.568886002005018 0.03042093 0.0061742365 prediction 0.440498170270113 Functional Loss - TMEM178A ENSG00000152154 CDS Human protein_coding chr2:39931237 chr2:39931240 synonymous SNV 0.993 0 24 hm5C_associated_SNPs_81748 0 0 0 0 2 TMEM178A chr2:39931334 5'GT 39931334 Upstream 95bp
chr7 143048731 143048731 1 + C T LUSC 143048729 + 143048709 143048749 41 ACACCAAGTCTGGGGTGCAGCTCCGCCCTCCCCTTGCCAGC ACACCAAGTCTGGGGTGCAGCTTCGCCCTCCCCTTGCCAGC < 41bp 0.720248405356685 0.449678095767255 0.33008587 0.21459293 prediction 0.44049681071337 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143048729 chr7:143048731 synonymous SNV . 0 23 hm5C_associated_SNPs_81749 0 0 0 0 1 CLCN1 chr7:143048687 3'AG 143048687 Downstream 45bp
chr12 7065680 7065680 1 + G T UCEC 7065678 + 7065658 7065698 41 ACTTCTGGCAGATGGCGTGGCAGGAGAACAGCCGTGTCATC ACTTCTGGCAGATGGCGTGGCATGAGAACAGCCGTGTCATC < 41bp 0.913728599840951 0.693481656851232 0.85601467 0.28140497 prediction 0.440493885979438 Functional Loss - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7065678 chr12:7065680 nonsynonymous SNV 0.995 5 23 hm5C_associated_SNPs_81750 0 0 0 0 2 PTPN6 chr12:7065582 3'AG 7065582 Downstream 99bp
chr12 7065680 7065680 1 + G T UCEC 7065678 + 7065658 7065698 41 ACTTCTGGCAGATGGCGTGGCAGGAGAACAGCCGTGTCATC ACTTCTGGCAGATGGCGTGGCATGAGAACAGCCGTGTCATC < 41bp 0.913728599840951 0.693481656851232 0.85601467 0.28140497 prediction 0.440493885979438 Functional Loss - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7065678 chr12:7065680 nonsynonymous SNV 0.995 5 23 hm5C_associated_SNPs_81750 0 0 0 0 2 PTPN6 chr12:7065731 5'GT 7065731 Upstream 52bp
chr22 42114206 42114206 1 + G A LGG 42114203 + 42114183 42114223 41 AGATGCTTTCAGGACACTTCCGTGAGAAGCTTTTTCCCCTC AGATGCTTTCAGGACACTTCCGTAAGAAGCTTTTTCCCCTC < 41bp 0.764153095707101 0.543909060839133 0.7367682 0.31812662 prediction 0.440488069735936 Functional Loss - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42114203 chr22:42114206 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_81753 0 0 0 0 1 MEI1 chr22:42114278 5'GT 42114278 Upstream 73bp
chr12 50349271 50349271 1 + G C LUSC 50349267 + 50349247 50349287 41 TCCGCCAGCCAAGAGCCTGTCGGAGCGCCTGGCAGTGCTGA TCCGCCAGCCAAGAGCCTGTCGGACCGCCTGGCAGTGCTGA < 41bp 0.720243695909158 0.423348203027543 0.9123862 0.1997743 prediction 0.440487391818316 Functional Loss - AQP2 ENSG00000167580 CDS Human protein_coding chr12:50349267 chr12:50349271 nonsynonymous SNV 0.980 2 25 hm5C_associated_SNPs_81754 0 0 0 0 1 AQP2 chr12:50349182 3'AG 50349182 Downstream 90bp
chr3 41275099 41275099 1 + G A GBM 41275096 + 41275076 41275116 41 AAATGTGGTCACCTGTGCAGCTGGAATTCTTTCTAACCTCA AAATGTGGTCACCTGTGCAGCTGAAATTCTTTCTAACCTCA < 41bp 0.720242340951297 0.490112217977579 0.071778744 0.057843 prediction 0.440484681902595 Functional Loss - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41275096 chr3:41275099 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_81755 0 0 1 0 1 CTNNB1 chr3:41275020 3'AG 41275020 Downstream 80bp
chr15 92987932 92987932 1 + G A SKCM 92987929 + 92987909 92987949 41 CTCAAGACAGACCTGGTAACCATGAACCCCTCGGTCATCCA CTCAAGACAGACCTGGTAACCATAAACCCCTCGGTCATCCA < 41bp 0.76658116756865 0.546343711480522 0.6067463 0.8852768 prediction 0.440474912176257 Functional Loss - ST8SIA2 ENSG00000140557 CDS Human protein_coding chr15:92987929 chr15:92987932 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_81759 0 0 0 0 1 ST8SIA2 chr15:92987866 3'AG 92987866 Downstream 67bp
chr3 149563870 149563870 1 + G A UCEC 149563867 + 149563847 149563887 41 GCCACACAAGTCTACACCATCTTGACTGTCCAGCTCTTTGC GCCACACAAGTCTACACCATCTTAACTGTCCAGCTCTTTGC < 41bp 0.758617929669852 0.538381150328501 0.08351624 0.037950426 prediction 0.440473558682703 Functional Loss - RNF13 ENSG00000082996 CDS Human protein_coding chr3:149563867 chr3:149563870 synonymous SNV . 0 24 hm5C_associated_SNPs_81761 0 0 1 0 2 RNF13 chr3:149563798 3'AG 149563798 Downstream 73bp
chr3 149563870 149563870 1 + G A UCEC 149563867 + 149563847 149563887 41 GCCACACAAGTCTACACCATCTTGACTGTCCAGCTCTTTGC GCCACACAAGTCTACACCATCTTAACTGTCCAGCTCTTTGC < 41bp 0.758617929669852 0.538381150328501 0.08351624 0.037950426 prediction 0.440473558682703 Functional Loss - RNF13 ENSG00000082996 CDS Human protein_coding chr3:149563867 chr3:149563870 synonymous SNV . 0 24 hm5C_associated_SNPs_81761 0 0 1 0 2 RNF13 chr3:149563927 5'GT 149563927 Upstream 58bp
chr3 183818417 183818417 1 + C T SARC 183818415 + 183818395 183818435 41 ACCCAAGTCAACATCTCCTTCGCGATGTCTGCCATCCTAGA ACCCAAGTCAACATCTCCTTCGTGATGTCTGCCATCCTAGA < 41bp 0.842262996566141 0.622034961248068 0.32303652 0.2903875 prediction 0.440456070636146 Functional Loss - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183818415 chr3:183818417 nonsynonymous SNV 0.846 0 23 hm5C_associated_SNPs_81764 0 0 0 0 1 HTR3E chr3:183818439 5'GT 183818439 Upstream 23bp
chr2 171571998 171571998 1 + A C rs115371253 171571994 + 171571974 171572014 41 CTCGGCGGCGGCGTCCCGCTCCGCAGCCAGGGGCCTGCAAG CTCGGCGGCGGCGTCCCGCTCCGCCGCCAGGGGCCTGCAAG < 41bp 0.839170913821304 0.618943735319632 0.29221544 0.25723928 prediction 0.440454357003344 Functional Loss - LOC101926913 ENSG00000204335 UTR5 Human protein_coding chr2:171571994 chr2:171571998 . . 0 25 hm5C_associated_SNPs_81766 0 0 1 0 1 SP5 chr2:171572073 5'GT 171572073 Upstream 76bp
chr14 24108146 24108146 1 + A C LUAD 24108145 + 24108125 24108165 41 AGGCTTTCTGTGAGGATGAGCAGCACCGGGATAGACAGGAA AGGCTTTCTGTGAGGATGAGCCGCACCGGGATAGACAGGAA < 41bp 0.81468471821729 0.59446728893259 0.33685833 0.17362398 prediction 0.440434858569398 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24108145 chr14:24108146 nonsynonymous SNV 0.130 4 22 hm5C_associated_SNPs_81771 0 0 1 0 1 DHRS2 chr14:24108213 5'GT 24108213 Upstream 68bp
chr6 151894594 151894594 1 + G T GBM 151894591 + 151894571 151894611 41 ACACCATTTTGGAGAAGATTCGAGAAATGGACAGCCGGGAA ACACCATTTTGGAGAAGATTCGATAAATGGACAGCCGGGAA < 41bp 0.926976678738797 0.706759541440573 0.42456794 0.19283977 prediction 0.440434274596448 Functional Loss - CCDC170 ENSG00000120262 CDS Human protein_coding chr6:151894591 chr6:151894594 stopgain 0.964 1 24 hm5C_associated_SNPs_81772 0 0 0 0 1 CCDC170 chr6:151894626 5'GT 151894626 Upstream 33bp
chr8 62371063 62371063 1 + G A rs376329314 62371060 + 62371040 62371080 41 ATGCACGTGAAGCATACGTCCTCGAATCTGGAGAGAGAATG ATGCACGTGAAGCATACGTCCTCAAATCTGGAGAGAGAATG < 41bp 0.720206685731933 0.493040723003476 0.39407104 0.054143548 prediction 0.440413371463866 Functional Loss - CLVS1 ENSG00000177182 CDS Human protein_coding chr8:62371060 chr8:62371063 synonymous SNV . 0 24 hm5C_associated_SNPs_81778 0 0 0 0 1 CLVS1 chr8:62371101 5'GT 62371101 Upstream 39bp
chr8 62371064 62371064 1 + A C LUSC 62371060 + 62371040 62371080 41 ATGCACGTGAAGCATACGTCCTCGAATCTGGAGAGAGAATG ATGCACGTGAAGCATACGTCCTCGCATCTGGAGAGAGAATG < 41bp 0.720206685731933 0.292625676824244 0.39407104 0.14635941 prediction 0.440413371463866 Functional Loss - CLVS1 ENSG00000177182 CDS Human protein_coding chr8:62371060 chr8:62371064 nonsynonymous SNV 0.116 0 25 hm5C_associated_SNPs_81779 0 0 0 0 1 CLVS1 chr8:62371101 5'GT 62371101 Upstream 38bp
chr5 139217287 139217287 1 + C T LIHC 139217284 + 139217264 139217304 41 CGCGTGCATCACGCTCTGGCCACCAGGGCCTCTGACTACAG CGCGTGCATCACGCTCTGGCCACTAGGGCCTCTGACTACAG < 41bp 0.720202972191784 0.491511463042816 0.29354 0.1312404 prediction 0.440405944383568 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139217284 chr5:139217287 synonymous SNV . 0 24 hm5C_associated_SNPs_81783 0 0 0 0 2 PSD2 chr5:139217210 3'AG 139217210 Downstream 78bp
chr5 139217287 139217287 1 + C T LIHC 139217284 + 139217264 139217304 41 CGCGTGCATCACGCTCTGGCCACCAGGGCCTCTGACTACAG CGCGTGCATCACGCTCTGGCCACTAGGGCCTCTGACTACAG < 41bp 0.720202972191784 0.491511463042816 0.29354 0.1312404 prediction 0.440405944383568 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139217284 chr5:139217287 synonymous SNV . 0 24 hm5C_associated_SNPs_81783 0 0 0 0 2 PSD2 chr5:139217367 5'GT 139217367 Upstream 81bp
chr3 139062964 139062964 1 + G A COAD 139062961 + 139062941 139062981 41 TTCCGGGCTCGAATCCAGCCCTGGCACGGTGGCCTGCTCCA TTCCGGGCTCGAATCCAGCCCTGACACGGTGGCCTGCTCCA < 41bp 0.720200198333753 0.46438697622251 0.20613444 0.15965265 prediction 0.440400396667506 Functional Loss - MRPS22 ENSG00000175110 CDS Human protein_coding chr3:139062961 chr3:139062964 stopgain 0.002 0 24 hm5C_associated_SNPs_81785 0 0 1 0 1 MRPS22 chr3:139063040 5'GT 139063040 Upstream 77bp
chr4 69341991 69341991 1 + G A rs148482101 69341988 + 69341968 69342008 41 CTCTTTTGCAGGCTGCGGAACACGAAGAAGTAAAACTCTAG CTCTTTTGCAGGCTGCGGAACACAAAGAAGTAAAACTCTAG < 41bp 0.752293534669124 0.532095273802777 0.34047487 0.14215988 prediction 0.440396521732694 Functional Loss - TMPRSS11E ENSG00000087128 CDS Human protein_coding chr4:69341988 chr4:69341991 nonsynonymous SNV 0.260 3 24 hm5C_associated_SNPs_81787 0 0 0 0 1 TMPRSS11E chr4:69341979 3'AG 69341979 Downstream 13bp
chr17 17965227 17965227 1 + C T UCEC 17965224 + 17965204 17965244 41 GCTTCTTTTGCCGGGTTCTACTACATCTGCTTTCAGAAGTC GCTTCTTTTGCCGGGTTCTACTATATCTGCTTTCAGAAGTC < 41bp 0.752740968263235 0.532543308931576 0.6544475 0.0927124 prediction 0.440395318663318 Functional Loss - GID4 ENSG00000141034 CDS Human protein_coding chr17:17965224 chr17:17965227 synonymous SNV . 0 24 hm5C_associated_SNPs_81788 0 0 1 0 2 GID4 chr17:17965159 3'AG 17965159 Downstream 69bp
chr17 17965227 17965227 1 + C T UCEC 17965224 + 17965204 17965244 41 GCTTCTTTTGCCGGGTTCTACTACATCTGCTTTCAGAAGTC GCTTCTTTTGCCGGGTTCTACTATATCTGCTTTCAGAAGTC < 41bp 0.752740968263235 0.532543308931576 0.6544475 0.0927124 prediction 0.440395318663318 Functional Loss - GID4 ENSG00000141034 CDS Human protein_coding chr17:17965224 chr17:17965227 synonymous SNV . 0 24 hm5C_associated_SNPs_81788 0 0 1 0 2 GID4 chr17:17965289 5'GT 17965289 Upstream 63bp
chr9 133495806 133495806 1 + C T UCEC 133495804 + 133495784 133495824 41 AAGCTGACTTTCGGGGTGTACGCGGCGATTTCAACTCTCGA AAGCTGACTTTCGGGGTGTACGTGGCGATTTCAACTCTCGA < 41bp 0.720196513342754 0.436764891138354 0.8272009 0.29686916 prediction 0.440393026685508 Functional Loss - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133495804 chr9:133495806 synonymous SNV . 0 23 hm5C_associated_SNPs_81789 0 0 1 0 2 FUBP3 chr9:133495741 3'AG 133495741 Downstream 66bp
chr9 133495806 133495806 1 + C T UCEC 133495804 + 133495784 133495824 41 AAGCTGACTTTCGGGGTGTACGCGGCGATTTCAACTCTCGA AAGCTGACTTTCGGGGTGTACGTGGCGATTTCAACTCTCGA < 41bp 0.720196513342754 0.436764891138354 0.8272009 0.29686916 prediction 0.440393026685508 Functional Loss - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133495804 chr9:133495806 synonymous SNV . 0 23 hm5C_associated_SNPs_81789 0 0 1 0 2 FUBP3 chr9:133495845 5'GT 133495845 Upstream 40bp
chr18 61558785 61558785 1 + C T SKCM 61558783 + 61558763 61558803 41 TTCCTCTCCCCATGGAGCATCTCGTCCACCATGGCCATGGT TTCCTCTCCCCATGGAGCATCTTGTCCACCATGGCCATGGT < 41bp 0.720187482238821 0.431817413719328 0.09054363 0.084765166 prediction 0.440374964477642 Functional Loss - SERPINB2 ENSG00000197632 CDS Human protein_coding chr18:61558783 chr18:61558785 nonsynonymous SNV 0.917 4 23 hm5C_associated_SNPs_81796 0 0 0 0 1 SERPINB2 chr18:61558846 5'GT 61558846 Upstream 62bp
chr1 1961087 1961087 1 + G T LUAD 1961084 + 1961064 1961104 41 AAGGCACTGGACGTCTACTTCTGGATCTGCTATGTCTTCGT AAGGCACTGGACGTCTACTTCTGTATCTGCTATGTCTTCGT < 41bp 0.929511105101303 0.709329144756172 0.83539176 0.46504003 prediction 0.440363920690262 Functional Loss - GABRD ENSG00000187730 CDS Human protein_coding chr1:1961084 chr1:1961087 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_81799 0 0 0 0 1 GABRD chr1:1960990 3'AG 1960990 Downstream 98bp
chr21 43838704 43838704 1 + G T LUAD 43838701 + 43838681 43838721 41 GATCGAGCCAGTGAGTCTGACACGTGGGTGAAGCACAGGTG GATCGAGCCAGTGAGTCTGACACTTGGGTGAAGCACAGGTG < 41bp 0.720181637369902 0.323536385782928 0.35059628 0.27904865 prediction 0.440363274739804 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43838701 chr21:43838704 synonymous SNV . 0 24 hm5C_associated_SNPs_81800 0 0 0 3 1 UBASH3A chr21:43838718 5'GT 43838718 Upstream 15bp
chr21 43838703 43838703 1 + C T STAD 43838701 + 43838681 43838721 41 GATCGAGCCAGTGAGTCTGACACGTGGGTGAAGCACAGGTG GATCGAGCCAGTGAGTCTGACATGTGGGTGAAGCACAGGTG < 41bp 0.720181637369902 0.463923402098415 0.35059628 0.45746678 prediction 0.440363274739804 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43838701 chr21:43838703 nonsynonymous SNV 0.983 4 23 hm5C_associated_SNPs_81801 0 0 0 3 1 UBASH3A chr21:43838718 5'GT 43838718 Upstream 16bp
chr5 141312891 141312891 1 + C T COAD 141312889 + 141312869 141312909 41 ACTTCCAGAAAGCTGCAGCCCGCGGCTACAGCAAAGCGCAG ACTTCCAGAAAGCTGCAGCCCGTGGCTACAGCAAAGCGCAG < 41bp 0.834340898890017 0.614164484652534 0.24138442 0.15419295 prediction 0.440352828474966 Functional Loss - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141312889 chr5:141312891 synonymous SNV . 0 23 hm5C_associated_SNPs_81804 0 0 1 0 2 KIAA0141 chr5:141312824 3'AG 141312824 Downstream 68bp
chr5 141312891 141312891 1 + C T COAD 141312889 + 141312869 141312909 41 ACTTCCAGAAAGCTGCAGCCCGCGGCTACAGCAAAGCGCAG ACTTCCAGAAAGCTGCAGCCCGTGGCTACAGCAAAGCGCAG < 41bp 0.834340898890017 0.614164484652534 0.24138442 0.15419295 prediction 0.440352828474966 Functional Loss - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141312889 chr5:141312891 synonymous SNV . 0 23 hm5C_associated_SNPs_81804 0 0 1 0 2 KIAA0141 chr5:141312966 5'GT 141312966 Upstream 76bp
chr12 111085646 111085646 1 + A C BRCA 111085645 + 111085625 111085665 41 AGAGGCAGGCTTCAGAGCTCCACCAGCCATCAATGCCAGGC AGAGGCAGGCTTCAGAGCTCCCCCAGCCATCAATGCCAGGC < 41bp 0.764585454939901 0.544413953276284 0.30222422 0.1336354 prediction 0.440343003327234 Functional Loss - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111085645 chr12:111085646 nonsynonymous SNV 0.117 0 22 hm5C_associated_SNPs_81805 0 0 1 1 2 TCTN1 chr12:111085554 3'AG 111085554 Downstream 93bp
chr12 111085646 111085646 1 + A C BRCA 111085645 + 111085625 111085665 41 AGAGGCAGGCTTCAGAGCTCCACCAGCCATCAATGCCAGGC AGAGGCAGGCTTCAGAGCTCCCCCAGCCATCAATGCCAGGC < 41bp 0.764585454939901 0.544413953276284 0.30222422 0.1336354 prediction 0.440343003327234 Functional Loss - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111085645 chr12:111085646 nonsynonymous SNV 0.117 0 22 hm5C_associated_SNPs_81805 0 0 1 1 2 TCTN1 chr12:111085698 5'GT 111085698 Upstream 53bp
chr5 1034917 1034917 1 + C T SKCM 1034915 + 1034895 1034935 41 ATCTATGAGGTCGTGGATGCCTCGGTCAACCACTCCTCGGG ATCTATGAGGTCGTGGATGCCTTGGTCAACCACTCCTCGGG < 41bp 0.838769551011713 0.618600531729452 0.26306635 0.177293 prediction 0.440338038564523 Functional Loss - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1034915 chr5:1034917 nonsynonymous SNV 0.158 4 23 hm5C_associated_SNPs_81806 0 0 0 0 1 NKD2 chr5:1034871 3'AG 1034871 Downstream 47bp
chr11 1862278 1862278 1 + G A SKCM 1862275 + 1862255 1862295 41 CCACAGCTGGAGGACATGAACCAGAAGCTATTTGATCTGCG CCACAGCTGGAGGACATGAACCAAAAGCTATTTGATCTGCG < 41bp 0.778826570704665 0.558660747540624 0.23906815 0.18431944 prediction 0.440331646328082 Functional Loss - TNNI2 ENSG00000130598 CDS Human protein_coding chr11:1862275 chr11:1862278 synonymous SNV . 0 24 hm5C_associated_SNPs_81808 0 0 0 0 1 TNNI2 chr11:1862261 3'AG 1862261 Downstream 18bp
chr6 167592524 167592524 1 + T C GBM 167592523 + 167592503 167592543 41 TGCATCCATCTTCCCGAAGTCTGCAAAACTCCGGTGGCAGA TGCATCCATCTTCCCGAAGTCCGCAAAACTCCGGTGGCAGA < 41bp 0.808515166041618 0.588349597758836 0.19314763 0.25085574 prediction 0.440331136565565 Functional Loss - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167592523 chr6:167592524 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_81809 0 0 0 0 2 TCP10L2 chr6:167592499 3'AG 167592499 Downstream 26bp
chr6 167592524 167592524 1 + T C GBM 167592523 + 167592503 167592543 41 TGCATCCATCTTCCCGAAGTCTGCAAAACTCCGGTGGCAGA TGCATCCATCTTCCCGAAGTCCGCAAAACTCCGGTGGCAGA < 41bp 0.808515166041618 0.588349597758836 0.19314763 0.25085574 prediction 0.440331136565565 Functional Loss - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167592523 chr6:167592524 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_81809 0 0 0 0 2 TCP10L2 chr6:167592610 5'GT 167592610 Upstream 87bp
chr12 113822725 113822725 1 + G T LUAD 113822723 + 113822703 113822743 41 GTGGGCCCAGCCCCGGGAGCCGGGTGCTTACCATCCTGGAG GTGGGCCCAGCCCCGGGAGCCGTGTGCTTACCATCCTGGAG < 41bp 0.72016382179884 0.353937629808145 0.9334473 0.36969507 prediction 0.44032764359768 Functional Loss - PLBD2 ENSG00000151176 CDS Human protein_coding chr12:113822723 chr12:113822725 synonymous SNV . 0 23 hm5C_associated_SNPs_81810 0 0 1 0 2 PLBD2 chr12:113822656 3'AG 113822656 Downstream 70bp
chr12 113822725 113822725 1 + G T LUAD 113822723 + 113822703 113822743 41 GTGGGCCCAGCCCCGGGAGCCGGGTGCTTACCATCCTGGAG GTGGGCCCAGCCCCGGGAGCCGTGTGCTTACCATCCTGGAG < 41bp 0.72016382179884 0.353937629808145 0.9334473 0.36969507 prediction 0.44032764359768 Functional Loss - PLBD2 ENSG00000151176 CDS Human protein_coding chr12:113822723 chr12:113822725 synonymous SNV . 0 23 hm5C_associated_SNPs_81810 0 0 1 0 2 PLBD2 chr12:113822751 5'GT 113822751 Upstream 27bp
chr12 132271090 132271090 1 + G A UCEC 132271087 + 132271067 132271107 41 GGAGTGTGCCCACTGCCTACCGCGTGAGCCGCAGCCCTGGG GGAGTGTGCCCACTGCCTACCGCATGAGCCGCAGCCCTGGG < 41bp 0.720160718280716 0.475792577937869 0.65747225 0.3168382 prediction 0.440321436561431 Functional Loss - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132271087 chr12:132271090 nonsynonymous SNV 0.944 0 24 hm5C_associated_SNPs_81814 0 0 1 0 2 SFSWAP chr12:132271008 3'AG 132271008 Downstream 83bp
chr12 132271090 132271090 1 + G A UCEC 132271087 + 132271067 132271107 41 GGAGTGTGCCCACTGCCTACCGCGTGAGCCGCAGCCCTGGG GGAGTGTGCCCACTGCCTACCGCATGAGCCGCAGCCCTGGG < 41bp 0.720160718280716 0.475792577937869 0.65747225 0.3168382 prediction 0.440321436561431 Functional Loss - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132271087 chr12:132271090 nonsynonymous SNV 0.944 0 24 hm5C_associated_SNPs_81814 0 0 1 0 2 SFSWAP chr12:132271133 5'GT 132271133 Upstream 44bp
chr3 100373774 100373774 1 + C T SKCM 100373772 + 100373752 100373792 41 TTTGTGTTTGGAATTGAAAACTCCAATAAGAACTTGCAGAC TTTGTGTTTGGAATTGAAAACTTCAATAAGAACTTGCAGAC < 41bp 0.720155394284894 0.429517472764564 0.9515841 0.3309851 prediction 0.440310788569788 Functional Loss - ADGRG7 ENSG00000144820 CDS Human protein_coding chr3:100373772 chr3:100373774 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_81818 0 0 0 0 1 ADGRG7 chr3:100373679 3'AG 100373679 Downstream 96bp
chr19 55179098 55179098 1 + G A rs146325339 55179095 + 55179075 55179115 41 TCTCTCTCCAGCAGAGCCCACACGATGAAGACCCCCAGGCA TCTCTCTCCAGCAGAGCCCACACAATGAAGACCCCCAGGCA < 41bp 0.785737616372667 0.565586010172371 0.26871926 0.12309605 prediction 0.440303212400592 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55179095 chr19:55179098 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_81822 0 0 0 0 2 LILRB4 chr19:55179086 3'AG 55179086 Downstream 13bp
chr19 55179098 55179098 1 + G A rs146325339 55179095 + 55179075 55179115 41 TCTCTCTCCAGCAGAGCCCACACGATGAAGACCCCCAGGCA TCTCTCTCCAGCAGAGCCCACACAATGAAGACCCCCAGGCA < 41bp 0.785737616372667 0.565586010172371 0.26871926 0.12309605 prediction 0.440303212400592 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55179095 chr19:55179098 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_81822 0 0 0 0 2 LILRB4 chr19:55179089 3'AG 55179089 Downstream 10bp
chr1 4832547 4832547 1 + G A COAD 4832544 + 4832524 4832564 41 TACACCGATGAGACGCTGCACTCGACGACGGGGGAGTACAA TACACCGATGAGACGCTGCACTCAACGACGGGGGAGTACAA < 41bp 0.764115233583369 0.543967247721458 0.09720492 0.022541583 prediction 0.440295971723822 Functional Loss - AJAP1 ENSG00000196581 CDS Human protein_coding chr1:4832544 chr1:4832547 synonymous SNV . 0 24 hm5C_associated_SNPs_81826 0 0 0 0 1 AJAP1 chr1:4832585 5'GT 4832585 Upstream 39bp
chr9 116045682 116045682 1 + T C SKCM 116045681 + 116045661 116045701 41 TGTCGCAGGGCAATGAAACGCTTGGAAGAGGCCCGACTCCA TGTCGCAGGGCAATGAAACGCCTGGAAGAGGCCCGACTCCA < 41bp 0.720147831857823 0.473082219997746 0.21178791 0.3372791 prediction 0.440295663715646 Functional Loss - PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116045681 chr9:116045682 synonymous SNV . 0 22 hm5C_associated_SNPs_81827 0 0 1 0 2 PRPF4 chr9:116045669 3'AG 116045669 Downstream 14bp
chr9 116045682 116045682 1 + T C SKCM 116045681 + 116045661 116045701 41 TGTCGCAGGGCAATGAAACGCTTGGAAGAGGCCCGACTCCA TGTCGCAGGGCAATGAAACGCCTGGAAGAGGCCCGACTCCA < 41bp 0.720147831857823 0.473082219997746 0.21178791 0.3372791 prediction 0.440295663715646 Functional Loss - PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116045681 chr9:116045682 synonymous SNV . 0 22 hm5C_associated_SNPs_81827 0 0 1 0 2 PRPF4 chr9:116045762 5'GT 116045762 Upstream 81bp
chr1 161183230 161183230 1 + C T LUAD 161183228 + 161183208 161183248 41 TACTGAGGGCTACCAAGTTCCTCCAGGAGCCACATATACTG TACTGAGGGCTACCAAGTTCCTTCAGGAGCCACATATACTG < 41bp 0.879036973119972 0.658893593835352 0.954571 0.026136458 prediction 0.440286758569242 Functional Loss - NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161183228 chr1:161183230 nonsynonymous SNV 0.953 2 23 hm5C_associated_SNPs_81829 0 0 1 0 2 NDUFS2 chr1:161183170 3'AG 161183170 Downstream 61bp
chr1 161183230 161183230 1 + C T LUAD 161183228 + 161183208 161183248 41 TACTGAGGGCTACCAAGTTCCTCCAGGAGCCACATATACTG TACTGAGGGCTACCAAGTTCCTTCAGGAGCCACATATACTG < 41bp 0.879036973119972 0.658893593835352 0.954571 0.026136458 prediction 0.440286758569242 Functional Loss - NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161183228 chr1:161183230 nonsynonymous SNV 0.953 2 23 hm5C_associated_SNPs_81829 0 0 1 0 2 NDUFS2 chr1:161183265 5'GT 161183265 Upstream 36bp
chr19 55221935 55221935 1 + G A rs45588833 55221932 + 55221912 55221952 41 CTCTCGGTGCAGCCGGGCCCCACGGTGGCCTCAGGAGAGAA CTCTCGGTGCAGCCGGGCCCCACAGTGGCCTCAGGAGAGAA < 41bp 0.749928717132535 0.529788935848896 0.15045288 0.167034 prediction 0.440279562567278 Functional Loss - LILRP2 ENSG00000170858 ncRNA_exonic Human transcribed_processed_pseudogene chr19:55221932 chr19:55221935 . . 0 24 hm5C_associated_SNPs_81832 0 0 0 0 1 LILRP2 chr19:55221889 3'AG 55221889 Downstream 47bp
chr20 2592967 2592967 1 + G T SKCM 2592965 + 2592945 2592985 41 GATGTGCCCCGGGGTTCTTGCTGGGAGACAGCTGTGGGCAT GATGTGCCCCGGGGTTCTTGCTTGGAGACAGCTGTGGGCAT < 41bp 0.911495556450595 0.69135853565297 0.76601505 0.26369268 prediction 0.44027404159525 Functional Loss - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2592965 chr20:2592967 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_81835 0 0 0 0 1 TMC2 chr20:2592986 5'GT 2592986 Upstream 20bp
chr8 67417718 67417718 1 + G T rs61736270 67417716 + 67417696 67417736 41 CAGGTTTGGGCGGCTCCAGACCGCGCGGCCGCCCACAGCCC CAGGTTTGGGCGGCTCCAGACCTCGCGGCCGCCCACAGCCC < 41bp 0.720136904416601 0.363255999255155 0.8887752 0.8519714 prediction 0.440273808833203 Functional Loss - C8orf46 ENSG00000169085 CDS Human protein_coding chr8:67417716 chr8:67417718 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_81836 0 0 0 0 1 C8orf46 chr8:67417763 5'GT 67417763 Upstream 46bp
chr12 50479963 50479963 1 + G A UCEC 50479960 + 50479940 50479980 41 GTAGAGACCAGGTATGTTGCCAGGCAGCCGAATGACACCTC GTAGAGACCAGGTATGTTGCCAGACAGCCGAATGACACCTC < 41bp 0.764288568114604 0.544154686581959 0.49492404 0.36551625 prediction 0.440267763065291 Functional Loss - SMARCD1 ENSG00000066117 CDS Human protein_coding chr12:50479960 chr12:50479963 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_81839 0 0 1 0 1 SMARCD1 chr12:50479944 3'AG 50479944 Downstream 20bp
chr4 40800851 40800851 1 + G T GBM 40800849 + 40800829 40800869 41 CTGCACATGTTCAGTTTTTCCAGAAGAAAATGAAGCTGTTG CTGCACATGTTCAGTTTTTCCATAAGAAAATGAAGCTGTTG < 41bp 0.720124624171708 0.379773159467609 0.5995655 0.09565288 prediction 0.440249248343415 Functional Loss - NSUN7 ENSG00000179299 CDS Human protein_coding chr4:40800849 chr4:40800851 stopgain 0.998 1 23 hm5C_associated_SNPs_81841 0 0 0 0 2 NSUN7 chr4:40800804 3'AG 40800804 Downstream 48bp
chr4 40800851 40800851 1 + G T GBM 40800849 + 40800829 40800869 41 CTGCACATGTTCAGTTTTTCCAGAAGAAAATGAAGCTGTTG CTGCACATGTTCAGTTTTTCCATAAGAAAATGAAGCTGTTG < 41bp 0.720124624171708 0.379773159467609 0.5995655 0.09565288 prediction 0.440249248343415 Functional Loss - NSUN7 ENSG00000179299 CDS Human protein_coding chr4:40800849 chr4:40800851 stopgain 0.998 1 23 hm5C_associated_SNPs_81841 0 0 0 0 2 NSUN7 chr4:40800921 5'GT 40800921 Upstream 71bp
chr1 43782963 43782963 1 + G A SKCM 43782960 + 43782940 43782980 41 AGCCCCTGAGCTACCCAGTGCTAGAGTGGGAGGACATCACC AGCCCCTGAGCTACCCAGTGCTAAAGTGGGAGGACATCACC < 41bp 0.720120307466127 0.48885543210087 0.9043265 0.91055983 prediction 0.440240614932254 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43782960 chr1:43782963 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_81842 0 0 0 0 1 TIE1 chr1:43782870 3'AG 43782870 Downstream 94bp
chr3 49008082 49008082 1 + G A HNSC 49008079 + 49008059 49008099 41 CAGACTGCCCCATGGTTATTCGGGTACAGGAGCCTAGAGCT CAGACTGCCCCATGGTTATTCGGATACAGGAGCCTAGAGCT < 41bp 0.800937212360171 0.580820747789356 0.8954313 0.8591617 prediction 0.440232929141631 Functional Loss - ARIH2 ENSG00000177479 CDS Human protein_coding chr3:49008079 chr3:49008082 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_81845 0 0 1 0 1 ARIH2 chr3:49008137 5'GT 49008137 Upstream 56bp
chr21 45819222 45819222 1 + G T COAD 45819220 + 45819200 45819240 41 GGAAGGACGAAGAGAGAGCCCAGAAACTGCTCACCCGCGTG GGAAGGACGAAGAGAGAGCCCATAAACTGCTCACCCGCGTG < 41bp 0.72011568897791 0.366467304519052 0.31541005 0.14415881 prediction 0.440231377955821 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45819220 chr21:45819222 nonsynonymous SNV 0.632 5 23 hm5C_associated_SNPs_81847 0 0 0 0 1 TRPM2 chr21:45819179 3'AG 45819179 Downstream 44bp
chr17 34391705 34391705 1 + G T UCEC 34391702 + 34391682 34391722 41 CTTCTCTGCCTGCCCAGCATCATGAAGGGCCTTGCAGCTGC CTTCTCTGCCTGCCCAGCATCATTAAGGGCCTTGCAGCTGC < 41bp 0.796087757413398 0.575973330771794 0.49537688 0.10021824 prediction 0.440228853283209 Functional Loss - CCL18 ENSG00000006074 CDS Human other chr17:34391702 chr17:34391705 nonsynonymous SNV 0.250 3 24 hm5C_associated_SNPs_81849 0 0 0 0 1 CCL18 chr17:34391769 5'GT 34391769 Upstream 65bp
chr1 171759744 171759744 1 + G T UCEC 171759741 + 171759721 171759761 41 GCCTTGCCCTGCTGAGAAACCCAGAGCTACTCCTAGGTGAG GCCTTGCCCTGCTGAGAAACCCATAGCTACTCCTAGGTGAG < 41bp 0.720112763983187 0.323279019097027 0.9046554 0.5067328 prediction 0.440225527966374 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171759741 chr1:171759744 stopgain 0.719 1 24 hm5C_associated_SNPs_81851 0 0 0 0 1 METTL13 chr1:171759756 5'GT 171759756 Upstream 13bp
chr1 909731 909731 1 + G A UCEC 909728 + 909708 909748 41 AGGGAAGGTTCGCCCGAACCCTGGCTGCCTCTGACAGGTGA AGGGAAGGTTCGCCCGAACCCTGACTGCCTCTGACAGGTGA < 41bp 0.720111394685757 0.47753854624521 0.29453146 0.10845032 prediction 0.440222789371514 Functional Loss - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:909728 chr1:909731 stopgain 0.000 0 24 hm5C_associated_SNPs_81853 0 0 1 0 2 PLEKHN1 chr1:909696 3'AG 909696 Downstream 36bp
chr1 909731 909731 1 + G A UCEC 909728 + 909708 909748 41 AGGGAAGGTTCGCCCGAACCCTGGCTGCCTCTGACAGGTGA AGGGAAGGTTCGCCCGAACCCTGACTGCCTCTGACAGGTGA < 41bp 0.720111394685757 0.47753854624521 0.29453146 0.10845032 prediction 0.440222789371514 Functional Loss - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:909728 chr1:909731 stopgain 0.000 0 24 hm5C_associated_SNPs_81853 0 0 1 0 2 PLEKHN1 chr1:909744 5'GT 909744 Upstream 14bp
chr22 18893911 18893911 1 + G A rs187183577 18893908 + 18893888 18893928 41 ATGGAGCGCTACGCGGGCGCCTTGGAGGAGGTGGCGGACGG ATGGAGCGCTACGCGGGCGCCTTAGAGGAGGTGGCGGACGG < 41bp 0.76282628074143 0.542721128071282 0.89439404 0.87411046 prediction 0.440210305340294 Functional Loss - DGCR6 ENSG00000183628 CDS Human protein_coding chr22:18893908 chr22:18893911 synonymous SNV . 0 24 hm5C_associated_SNPs_81858 0 0 0 0 1 DGCR6 chr22:18893997 5'GT 18893997 Upstream 87bp
chr7 150163835 150163835 1 + G A SKCM 150163832 + 150163812 150163852 41 CCGAACTGCGGCTCCTCCTCCTGGGAAAATGCCGCTCGGGA CCGAACTGCGGCTCCTCCTCCTGAGAAAATGCCGCTCGGGA < 41bp 0.804559824486995 0.584456271495883 0.5792939 0.26206845 prediction 0.440207105982223 Functional Loss - GIMAP8 ENSG00000171115 CDS Human protein_coding chr7:150163832 chr7:150163835 nonsynonymous SNV 0.059 5 24 hm5C_associated_SNPs_81862 0 0 0 0 1 GIMAP8 chr7:150163759 3'AG 150163759 Downstream 77bp
chr10 51579211 51579211 1 + C T COAD 51579209 + 51579189 51579229 41 CCTTTTGAGGTGTAGTGATGCACGGAGGGACTTGGAGCTTG CCTTTTGAGGTGTAGTGATGCATGGAGGGACTTGGAGCTTG < 41bp 0.840293344793723 0.620190387373035 0.3574174 0.74668586 prediction 0.440205914841376 Functional Loss - NCOA4 ENSG00000138293 CDS Human other chr10:51579209 chr10:51579211 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_81863 0 0 1 0 2 NCOA4 chr10:51579128 3'AG 51579128 Downstream 84bp
chr10 51579211 51579211 1 + C T COAD 51579209 + 51579189 51579229 41 CCTTTTGAGGTGTAGTGATGCACGGAGGGACTTGGAGCTTG CCTTTTGAGGTGTAGTGATGCATGGAGGGACTTGGAGCTTG < 41bp 0.840293344793723 0.620190387373035 0.3574174 0.74668586 prediction 0.440205914841376 Functional Loss - NCOA4 ENSG00000138293 CDS Human other chr10:51579209 chr10:51579211 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_81863 0 0 1 0 2 NCOA4 chr10:51579282 5'GT 51579282 Upstream 72bp
chr17 72348067 72348067 1 + T C rs113828430 72348066 + 72348046 72348086 41 GCCGGCGCCTGGAGGAGACGCTGCCGCGGCGCATCGGCTCC GCCGGCGCCTGGAGGAGACGCCGCCGCGGCGCATCGGCTCC < 41bp 0.720095095159666 0.480932732423232 0.3806373 0.43787992 prediction 0.440190190319332 Functional Loss - KIF19 ENSG00000196169;ENSG00000268626 CDS Human other chr17:72348066 chr17:72348067 nonsynonymous SNV 0.812 3 22 hm5C_associated_SNPs_81866 0 0 0 0 1 KIF19 chr17:72348006 3'AG 72348006 Downstream 62bp
chr6 3118998 3118998 1 + G T rs2231357 3118995 + 3118975 3119015 41 ATGGTGGCTGTGCTGGGCGGCCGGGGCGTGTTGCGCCTGCG ATGGTGGCTGTGCTGGGCGGCCGTGGCGTGTTGCGCCTGCG < 41bp 0.72009099112914 0.328527583114808 0.9139805 0.4586419 prediction 0.44018198225828 Functional Loss - BPHL ENSG00000137274 CDS Human protein_coding chr6:3118995 chr6:3118998 synonymous SNV . 0 24 hm5C_associated_SNPs_81868 0 0 1 0 1 BPHL chr6:3119081 5'GT 3119081 Upstream 84bp
chr3 119305142 119305142 1 + G A rs142760415 119305139 + 119305119 119305159 41 GACTCTTCCCCAGGTGGTGCCTCGGTGCACAACGCCATGCA GACTCTTCCCCAGGTGGTGCCTCAGTGCACAACGCCATGCA < 41bp 0.800225542467717 0.580135216425587 0.100640476 0.075544834 prediction 0.440180652084261 Functional Loss - ADPRH ENSG00000144843 CDS Human protein_coding chr3:119305139 chr3:119305142 synonymous SNV . 0 24 hm5C_associated_SNPs_81869 0 0 0 0 1 ADPRH chr3:119305132 3'AG 119305132 Downstream 11bp
chr17 76212113 76212113 1 + G A HNSC 76212110 + 76212090 76212130 41 GGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGA GGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGA < 41bp 0.800462102144296 0.580376065378743 0.9288942 0.9139743 prediction 0.440172073531105 Functional Loss - BIRC5 ENSG00000089685 CDS Human protein_coding chr17:76212110 chr17:76212113 synonymous SNV . 0 24 hm5C_associated_SNPs_81870 0 0 0 0 3 BIRC5 chr17:76212047 3'AG 76212047 Downstream 67bp
chr17 76212113 76212113 1 + G A HNSC 76212110 + 76212090 76212130 41 GGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGA GGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGA < 41bp 0.800462102144296 0.580376065378743 0.9288942 0.9139743 prediction 0.440172073531105 Functional Loss - BIRC5 ENSG00000089685 CDS Human protein_coding chr17:76212110 chr17:76212113 synonymous SNV . 0 24 hm5C_associated_SNPs_81870 0 0 0 0 3 BIRC5 chr17:76212115 5'GT 76212115 Upstream 3bp
chr17 76212113 76212113 1 + G A HNSC 76212110 + 76212090 76212130 41 GGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGA GGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGA < 41bp 0.800462102144296 0.580376065378743 0.9288942 0.9139743 prediction 0.440172073531105 Functional Loss - BIRC5 ENSG00000089685 CDS Human protein_coding chr17:76212110 chr17:76212113 synonymous SNV . 0 24 hm5C_associated_SNPs_81870 0 0 0 0 3 BIRC5 chr17:76212147 5'GT 76212147 Upstream 35bp
chr16 2127662 2127662 1 + G A SKCM 2127659 + 2127639 2127679 41 TCTCCACCCGTGAAAGAATTCAAGGAGAGCTCTGCAGCCGA TCTCCACCCGTGAAAGAATTCAAAGAGAGCTCTGCAGCCGA < 41bp 0.738700962540946 0.518616287365082 0.33321032 0.08391294 prediction 0.440169350351728 Functional Loss - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2127659 chr16:2127662 synonymous SNV . 0 24 hm5C_associated_SNPs_81871 0 0 1 0 2 TSC2 chr16:2127599 3'AG 2127599 Downstream 64bp
chr16 2127662 2127662 1 + G A SKCM 2127659 + 2127639 2127679 41 TCTCCACCCGTGAAAGAATTCAAGGAGAGCTCTGCAGCCGA TCTCCACCCGTGAAAGAATTCAAAGAGAGCTCTGCAGCCGA < 41bp 0.738700962540946 0.518616287365082 0.33321032 0.08391294 prediction 0.440169350351728 Functional Loss - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2127659 chr16:2127662 synonymous SNV . 0 24 hm5C_associated_SNPs_81871 0 0 1 0 2 TSC2 chr16:2127727 5'GT 2127727 Upstream 66bp
chr20 34020919 34020919 1 + C T rs547732688 34020917 + 34020897 34020937 41 CCCCAATGGAGCAAATAGAGCTCGGGACCCAGGGGCCTTTG CCCCAATGGAGCAAATAGAGCTTGGGACCCAGGGGCCTTTG < 41bp 0.720083645146628 0.49958318359729 0.26355612 0.1983568 prediction 0.440167290293257 Functional Loss - GDF5OS ENSG00000204183 UTR5 Human protein_coding chr20:34020917 chr20:34020919 . . 0 23 hm5C_associated_SNPs_81872 0 0 0 0 1 GDF5OS chr20:34020961 5'GT 34020961 Upstream 43bp
chr10 96602605 96602605 1 + G A SKCM 96602602 + 96602582 96602622 41 GTGTCTTGTCAGCTAAAGTCCAGGAAGAGATTGAACGTGTC GTGTCTTGTCAGCTAAAGTCCAGAAAGAGATTGAACGTGTC < 41bp 0.771734106316385 0.55165078703802 0.51316863 0.3625509 prediction 0.44016663855673 Functional Loss - CYP2C19 ENSG00000165841 CDS Human protein_coding chr10:96602602 chr10:96602605 nonsynonymous SNV 0.221 0 24 hm5C_associated_SNPs_81873 0 0 0 0 1 CYP2C19 chr10:96602594 3'AG 96602594 Downstream 12bp
chr1 31194489 31194489 1 + G A rs150728572 31194486 + 31194466 31194506 41 TTGGGCCCCACGTCCAGCGACTCGATGACCTGGGACAGGAA TTGGGCCCCACGTCCAGCGACTCAATGACCTGGGACAGGAA < 41bp 0.774189235823907 0.554106062369579 0.260809 0.59098 prediction 0.440166346908655 Functional Loss - MATN1 ENSG00000162510 CDS Human protein_coding chr1:31194486 chr1:31194489 synonymous SNV . 0 24 hm5C_associated_SNPs_81874 0 0 1 0 1 MATN1 chr1:31194569 5'GT 31194569 Upstream 81bp
chr10 115481474 115481474 1 + G T THCA 115481472 + 115481452 115481492 41 TCTTCAAGTGCTTCCGAAGCCTGGGTTTTGACGTGATTGTC TCTTCAAGTGCTTCCGAAGCCTTGGTTTTGACGTGATTGTC < 41bp 0.903412644835577 0.683331077361278 0.24794394 0.045907497 prediction 0.440163134948598 Functional Loss - CASP7 ENSG00000165806 CDS Human protein_coding chr10:115481472 chr10:115481474 synonymous SNV . 0 23 hm5C_associated_SNPs_81876 0 0 1 0 2 CASP7 chr10:115481410 3'AG 115481410 Downstream 65bp
chr10 115481474 115481474 1 + G T THCA 115481472 + 115481452 115481492 41 TCTTCAAGTGCTTCCGAAGCCTGGGTTTTGACGTGATTGTC TCTTCAAGTGCTTCCGAAGCCTTGGTTTTGACGTGATTGTC < 41bp 0.903412644835577 0.683331077361278 0.24794394 0.045907497 prediction 0.440163134948598 Functional Loss - CASP7 ENSG00000165806 CDS Human protein_coding chr10:115481472 chr10:115481474 synonymous SNV . 0 23 hm5C_associated_SNPs_81876 0 0 1 0 2 CASP7 chr10:115481538 5'GT 115481538 Upstream 65bp
chr22 30405084 30405084 1 + C T UCEC 30405081 + 30405061 30405101 41 TTCGGAGGAGTTTTCAGTCTCTGCGGTTGCTGTGCACTCAG TTCGGAGGAGTTTTCAGTCTCTGTGGTTGCTGTGCACTCAG < 41bp 0.720077081348093 0.499275009856597 0.78801477 0.5343278 prediction 0.440154162696187 Functional Loss - MTMR3 ENSG00000100330 CDS Human protein_coding chr22:30405081 chr22:30405084 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_81878 0 0 1 0 1 MTMR3 chr22:30405118 5'GT 30405118 Upstream 35bp
chr12 42836501 42836501 1 + C T THCA 42836499 + 42836479 42836519 41 TGAGGAACACTGAAATGGATCACGACGGAACCCCCGAAAAC TGAGGAACACTGAAATGGATCATGACGGAACCCCCGAAAAC < 41bp 0.81480338232144 0.594729350421397 0.22753811 0.33176753 prediction 0.440148063800086 Functional Loss - PPHLN1 ENSG00000134283 CDS Human protein_coding chr12:42836499 chr12:42836501 synonymous SNV . 0 23 hm5C_associated_SNPs_81879 0 0 1 0 1 PPHLN1 chr12:42836543 5'GT 42836543 Upstream 43bp
chr7 100192127 100192127 1 + C T UCEC 100192124 + 100192104 100192144 41 CTGCCTCACCTGCGCGTGGCCTGCATGACTTCCAACCAGAG CTGCCTCACCTGCGCGTGGCCTGTATGACTTCCAACCAGAG < 41bp 0.745962002815104 0.525889951555571 0.15238678 0.1098662 prediction 0.440144102519066 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100192124 chr7:100192127 synonymous SNV . 0 24 hm5C_associated_SNPs_81880 0 0 0 0 1 FBXO24 chr7:100192164 5'GT 100192164 Upstream 38bp
chr10 12198955 12198955 1 + C T SKCM 12198952 + 12198932 12198972 41 GCTCTGTTCCATTTGTTGGCCACCAGGACGGACAAAGTCCG GCTCTGTTCCATTTGTTGGCCACTAGGACGGACAAAGTCCG < 41bp 0.720070624290102 0.488808073858865 0.052672744 0.10453531 prediction 0.440141248580203 Functional Loss - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12198952 chr10:12198955 synonymous SNV . 0 24 hm5C_associated_SNPs_81883 0 0 1 0 1 SEC61A2 chr10:12198906 3'AG 12198906 Downstream 50bp
chr3 9804607 9804607 1 - C T SKCM 9804610 - 9804590 9804630 41 CATGACCTGGGCATTGTACACCGGGATCTCAAGGTGGGGCT CATGACCTGGGCATTGTACACCGAGATCTCAAGGTGGGGCT < 41bp 0.794859857414393 0.574789685876167 0.9011163 0.24302989 prediction 0.440140343076452 Functional Loss - CAMK1 ENSG00000134072 CDS Human protein_coding chr3:9804610 chr3:9804607 synonymous SNV . 0 24 hm5C_associated_SNPs_81884 0 0 1 0 1 CAMK1 chr3:9804598 5'GT 9804598 Upstream 10bp
chr12 111345178 111345178 1 + C T rs116390720 111345176 + 111345156 111345196 41 GCAGCCTTCGGCAGCTGGTTCTCGACAATTATATCCTGAAG GCAGCCTTCGGCAGCTGGTTCTTGACAATTATATCCTGAAG < 41bp 0.850150367164582 0.630081297709743 0.37601686 0.10682222 prediction 0.440138138909677 Functional Loss - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111345176 chr12:111345178 synonymous SNV . 0 23 hm5C_associated_SNPs_81885 0 0 0 0 1 CCDC63 chr12:111345135 3'AG 111345135 Downstream 44bp
chr7 89859307 89859307 1 + C T CESC 89859304 + 89859284 89859324 41 CCTGGCAGTCACTTCTATCCCTTCAGTGAGCAATGCTTTAA CCTGGCAGTCACTTCTATCCCTTTAGTGAGCAATGCTTTAA < 41bp 0.747442674194267 0.527377368609368 0.02709663 0.036336392 prediction 0.440130611169798 Functional Loss - STEAP2 ENSG00000157214 CDS Human protein_coding chr7:89859304 chr7:89859307 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_81886 0 0 0 0 1 STEAP2 chr7:89859350 5'GT 89859350 Upstream 44bp
chr6 161137769 161137769 1 + G T COAD 161137767 + 161137747 161137787 41 ACCACCGACCCCAACAAGCGCTGGGAACTTTGTGACATCCC ACCACCGACCCCAACAAGCGCTTGGAACTTTGTGACATCCC < 41bp 0.720060810766366 0.366116051123068 0.3918679 0.07823193 prediction 0.440121621532733 Functional Loss - PLG ENSG00000122194 CDS Human protein_coding chr6:161137767 chr6:161137769 nonsynonymous SNV 0.975 3 23 hm5C_associated_SNPs_81888 0 0 0 0 2 PLG chr6:161137677 3'AG 161137677 Downstream 93bp
chr6 161137769 161137769 1 + G T COAD 161137767 + 161137747 161137787 41 ACCACCGACCCCAACAAGCGCTGGGAACTTTGTGACATCCC ACCACCGACCCCAACAAGCGCTTGGAACTTTGTGACATCCC < 41bp 0.720060810766366 0.366116051123068 0.3918679 0.07823193 prediction 0.440121621532733 Functional Loss - PLG ENSG00000122194 CDS Human protein_coding chr6:161137767 chr6:161137769 nonsynonymous SNV 0.975 3 23 hm5C_associated_SNPs_81888 0 0 0 0 2 PLG chr6:161137795 5'GT 161137795 Upstream 27bp
chr1 151497247 151497247 1 + T C UCEC 151497246 + 151497226 151497266 41 GGGAGCGGGAGTTGACAGCCCTGAAGGGGGCCCTGAAAGAG GGGAGCGGGAGTTGACAGCCCCGAAGGGGGCCCTGAAAGAG < 41bp 0.720057422934348 0.465581397803904 0.3730018 0.368688 prediction 0.440114845868695 Functional Loss - CGN ENSG00000143375 CDS Human protein_coding chr1:151497246 chr1:151497247 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_81892 0 0 0 0 1 CGN chr1:151497150 3'AG 151497150 Downstream 98bp
chr12 113354475 113354475 1 + G A UCEC 113354472 + 113354452 113354492 41 TACCAGCAACTCTGCATCTACTGGACAAAGTATTATGACTT TACCAGCAACTCTGCATCTACTGAACAAAGTATTATGACTT < 41bp 0.720050488270519 0.492336778254719 0.16485438 0.12306395 prediction 0.440100976541038 Functional Loss - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113354472 chr12:113354475 stopgain 0.895 0 24 hm5C_associated_SNPs_81896 0 0 0 7 1 OAS1 chr12:113354543 5'GT 113354543 Upstream 69bp
chr8 124810464 124810464 1 + A T LUAD 124810460 + 124810440 124810480 41 ACCAATGAAATCCGGCCTGTCAGCAGCTGCACCCCTCAGGT ACCAATGAAATCCGGCCTGTCAGCTGCTGCACCCCTCAGGT < 41bp 0.894502747968696 0.674453220096184 0.29158798 0.32041514 prediction 0.440099055745024 Functional Loss - FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124810460 chr8:124810464 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_81897 0 0 1 0 1 FAM91A1 chr8:124810478 5'GT 124810478 Upstream 15bp
chr5 128362958 128362958 1 + G A SKCM 128362955 + 128362935 128362975 41 GGGAGATGTTTACCTTAATACTGGAGACTTAATAGTCCAGG GGGAGATGTTTACCTTAATACTGAAGACTTAATAGTCCAGG < 41bp 0.740657593231365 0.520613623397962 0.29171717 0.21224058 prediction 0.440087939666806 Functional Loss - SLC27A6 ENSG00000113396 CDS Human protein_coding chr5:128362955 chr5:128362958 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_81901 0 0 0 0 1 SLC27A6 chr5:128363024 5'GT 128363024 Upstream 67bp
chr19 53046547 53046547 1 + G A CESC 53046544 + 53046524 53046564 41 ATTTCTAAAGACTCATGTTACGTGAGGAAGCAGCTCAGAAG ATTTCTAAAGACTCATGTTACGTAAGGAAGCAGCTCAGAAG < 41bp 0.764767472105607 0.544724630776329 0.4674713 0.14253545 prediction 0.440085682658555 Functional Loss - ZNF808 ENSG00000198482 CDS Human protein_coding chr19:53046544 chr19:53046547 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_81902 0 0 0 0 2 ZNF808 chr19:53046519 3'AG 53046519 Downstream 29bp
chr19 53046547 53046547 1 + G A CESC 53046544 + 53046524 53046564 41 ATTTCTAAAGACTCATGTTACGTGAGGAAGCAGCTCAGAAG ATTTCTAAAGACTCATGTTACGTAAGGAAGCAGCTCAGAAG < 41bp 0.764767472105607 0.544724630776329 0.4674713 0.14253545 prediction 0.440085682658555 Functional Loss - ZNF808 ENSG00000198482 CDS Human protein_coding chr19:53046544 chr19:53046547 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_81902 0 0 0 0 2 ZNF808 chr19:53046600 5'GT 53046600 Upstream 54bp
chr12 121435468 121435468 1 + G A HNSC 121435465 + 121435445 121435485 41 TGGCTCAGCTGCAGAGCCCCCACGGTGAGCGCCCTGTGCCC TGGCTCAGCTGCAGAGCCCCCACAGTGAGCGCCCTGTGCCC < 41bp 0.806282326744261 0.586241181442757 0.5076823 0.17251682 prediction 0.440082290603008 Functional Loss - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121435465 chr12:121435468 nonsynonymous SNV 0.810 3 24 hm5C_associated_SNPs_81904 0 0 1 0 1 HNF1A chr12:121435468 5'GT 121435468 Upstream 1bp
chr5 139193282 139193282 1 + G A SKCM 139193279 + 139193259 139193299 41 GATTCCATGAAGATGGCCCTCAGGGCCCAGGGGGGGATGAG GATTCCATGAAGATGGCCCTCAGAGCCCAGGGGGGGATGAG < 41bp 0.792377134900366 0.572337816501869 0.78916883 0.35941976 prediction 0.440078636796993 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139193279 chr5:139193282 nonsynonymous SNV 0.290 0 24 hm5C_associated_SNPs_81905 0 0 0 0 1 PSD2 chr5:139193343 5'GT 139193343 Upstream 62bp
chr19 22270801 22270801 1 + A C UCEC 22270797 + 22270777 22270817 41 AGTTATGTGTTCTCATATTGCTGAAGACCTTTGCCCAGAGC AGTTATGTGTTCTCATATTGCTGACGACCTTTGCCCAGAGC < 41bp 0.720039301790041 0.34219389996175 0.12876323 0.08247784 prediction 0.440078603580082 Functional Loss - ZNF257 ENSG00000197134 CDS Human protein_coding chr19:22270797 chr19:22270801 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_81906 0 0 0 0 1 ZNF257 chr19:22270779 3'AG 22270779 Downstream 23bp
chr1 26146512 26146512 1 + G A rs2294225 26146509 + 26146489 26146529 41 GAGGTGAGAGAGTCCGGGAGCCCGAGCTTGAGGTGAGAAAG GAGGTGAGAGAGTCCGGGAGCCCAAGCTTGAGGTGAGAAAG < 41bp 0.753545596889619 0.533506448555783 0.2617401 0.33154225 prediction 0.440078296667672 Functional Loss - LOC646471 ENSG00000117640;ENSG00000223474 UTR5;UTR3 Human other chr1:26146509 chr1:26146512 . . 0 24 hm5C_associated_SNPs_81907 0 0 1 0 1 LOC646471 chr1:26146520 5'GT 26146520 Upstream 9bp
chr11 18723218 18723218 1 + G T LUSC 18723216 + 18723196 18723236 41 TCTGGTGATGGCAGCGCTGTCGGGCCTGTGCTATGCCCTCC TCTGGTGATGGCAGCGCTGTCGTGCCTGTGCTATGCCCTCC < 41bp 0.908444383975722 0.688406873032684 0.91078377 0.55012465 prediction 0.440075021886076 Functional Loss - TMEM86A ENSG00000151117 CDS Human protein_coding chr11:18723216 chr11:18723218 nonsynonymous SNV 0.866 0 23 hm5C_associated_SNPs_81909 0 0 0 0 1 TMEM86A chr11:18723120 3'AG 18723120 Downstream 99bp
chr1 110172520 110172520 1 + C T COAD 110172518 + 110172498 110172538 41 TGCTGGCTGAGAACATTTCCCACGGGCTCCTTCTGCGCAAG TGCTGGCTGAGAACATTTCCCATGGGCTCCTTCTGCGCAAG < 41bp 0.802768505689242 0.582731357454867 0.41186017 0.25278246 prediction 0.440074296468749 Functional Loss - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110172518 chr1:110172520 synonymous SNV . 0 23 hm5C_associated_SNPs_81910 0 0 1 0 2 AMPD2 chr1:110172422 3'AG 110172422 Downstream 99bp
chr1 110172520 110172520 1 + C T COAD 110172518 + 110172498 110172538 41 TGCTGGCTGAGAACATTTCCCACGGGCTCCTTCTGCGCAAG TGCTGGCTGAGAACATTTCCCATGGGCTCCTTCTGCGCAAG < 41bp 0.802768505689242 0.582731357454867 0.41186017 0.25278246 prediction 0.440074296468749 Functional Loss - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110172518 chr1:110172520 synonymous SNV . 0 23 hm5C_associated_SNPs_81910 0 0 1 0 2 AMPD2 chr1:110172538 5'GT 110172538 Upstream 19bp
chr10 104182636 104182636 1 + G A CESC 104182633 + 104182613 104182653 41 CACCATGTGGCGGAGTCCAGCCTGAGCCGCTTGCGGAAGCG CACCATGTGGCGGAGTCCAGCCTAAGCCGCTTGCGGAAGCG < 41bp 0.720037145212263 0.482667626342512 0.13238105 0.09488276 prediction 0.440074290424526 Functional Loss - FBXL15 ENSG00000107872 CDS Human protein_coding chr10:104182633 chr10:104182636 synonymous SNV . 0 24 hm5C_associated_SNPs_81911 0 0 1 0 1 FBXL15 chr10:104182561 3'AG 104182561 Downstream 76bp
chr2 189854874 189854874 1 + C T SKCM 189854871 + 189854851 189854891 41 AGAGCGAGGATTGCCTGGACCTCCAGTGAGTCTTCAGCATC AGAGCGAGGATTGCCTGGACCTCTAGTGAGTCTTCAGCATC < 41bp 0.729199165393355 0.509167207442871 0.9337748 0.4891459 prediction 0.440063915900969 Functional Loss - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189854871 chr2:189854874 nonsynonymous SNV 0.991 1 24 hm5C_associated_SNPs_81915 0 0 0 0 2 COL3A1 chr2:189854822 3'AG 189854822 Downstream 53bp
chr2 189854874 189854874 1 + C T SKCM 189854871 + 189854851 189854891 41 AGAGCGAGGATTGCCTGGACCTCCAGTGAGTCTTCAGCATC AGAGCGAGGATTGCCTGGACCTCTAGTGAGTCTTCAGCATC < 41bp 0.729199165393355 0.509167207442871 0.9337748 0.4891459 prediction 0.440063915900969 Functional Loss - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189854871 chr2:189854874 nonsynonymous SNV 0.991 1 24 hm5C_associated_SNPs_81915 0 0 0 0 2 COL3A1 chr2:189854875 5'GT 189854875 Upstream 2bp
chr5 176824020 176824020 1 + C T CESC 176824018 + 176823998 176824038 41 TCCAACATCGGCACCACCACCACGGCCATCCTGGCTGCCCT TCCAACATCGGCACCACCACCATGGCCATCCTGGCTGCCCT < 41bp 0.816029999136152 0.59599806689616 0.9278449 0.92292255 prediction 0.440063864479984 Functional Loss - SLC34A1 ENSG00000131183 CDS Human protein_coding chr5:176824018 chr5:176824020 nonsynonymous SNV 0.960 5 23 hm5C_associated_SNPs_81916 0 0 0 0 2 SLC34A1 chr5:176823951 3'AG 176823951 Downstream 70bp
chr5 176824020 176824020 1 + C T CESC 176824018 + 176823998 176824038 41 TCCAACATCGGCACCACCACCACGGCCATCCTGGCTGCCCT TCCAACATCGGCACCACCACCATGGCCATCCTGGCTGCCCT < 41bp 0.816029999136152 0.59599806689616 0.9278449 0.92292255 prediction 0.440063864479984 Functional Loss - SLC34A1 ENSG00000131183 CDS Human protein_coding chr5:176824018 chr5:176824020 nonsynonymous SNV 0.960 5 23 hm5C_associated_SNPs_81916 0 0 0 0 2 SLC34A1 chr5:176824075 5'GT 176824075 Upstream 56bp
chr5 150051469 150051469 1 + A C rs373090645 150051465 + 150051445 150051485 41 CCCCAGCCCCAGCGCCCTGGCGCCAGGTGAGTGGCCTCCTC CCCCAGCCCCAGCGCCCTGGCGCCCGGTGAGTGGCCTCCTC < 41bp 0.934799036211191 0.714767990417417 0.83279914 0.5841534 prediction 0.440062091587547 Functional Loss - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150051465 chr5:150051469 synonymous SNV . 0 25 hm5C_associated_SNPs_81918 0 0 0 0 1 MYOZ3 chr5:150051470 5'GT 150051470 Upstream 2bp
chr17 47656046 47656046 1 + G A UCEC 47656043 + 47656023 47656063 41 CCAGCCCCGGCCCCGGGTGCCTCGGAAGCGGGGCCACATCT CCAGCCCCGGCCCCGGGTGCCTCAGAAGCGGGGCCACATCT < 41bp 0.79782599792396 0.577795147294687 0.9317093 0.89824593 prediction 0.440061701258547 Functional Loss - NXPH3 ENSG00000182575 CDS Human protein_coding chr17:47656043 chr17:47656046 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_81919 0 0 0 0 1 NXPH3 chr17:47655958 3'AG 47655958 Downstream 89bp
chr17 56276915 56276915 1 + G A UCEC 56276912 + 56276892 56276932 41 CCTTCCAGATCATCACCTACCGAGACTTTCTGCCCCTGGTT CCTTCCAGATCATCACCTACCGAAACTTTCTGCCCCTGGTT < 41bp 0.811611622189077 0.59158144847419 0.90140533 0.6456644 prediction 0.440060347429776 Functional Loss - EPX ENSG00000121053 CDS Human protein_coding chr17:56276912 chr17:56276915 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_81921 0 0 0 0 1 EPX chr17:56276900 3'AG 56276900 Downstream 16bp
chr19 45537779 45537779 1 + C T rs2230682 45537777 + 45537757 45537797 41 TGGACCACTTCCTGCCCAACCACGGCTCAGGTGGGTCCCAG TGGACCACTTCCTGCCCAACCATGGCTCAGGTGGGTCCCAG < 41bp 0.819162346120599 0.599132803845158 0.4350115 0.36096817 prediction 0.440059084550881 Functional Loss - RELB ENSG00000104856 CDS Human protein_coding chr19:45537777 chr19:45537779 synonymous SNV . 0 23 hm5C_associated_SNPs_81923 0 0 0 0 2 RELB chr19:45537709 3'AG 45537709 Downstream 71bp
chr19 45537779 45537779 1 + C T rs2230682 45537777 + 45537757 45537797 41 TGGACCACTTCCTGCCCAACCACGGCTCAGGTGGGTCCCAG TGGACCACTTCCTGCCCAACCATGGCTCAGGTGGGTCCCAG < 41bp 0.819162346120599 0.599132803845158 0.4350115 0.36096817 prediction 0.440059084550881 Functional Loss - RELB ENSG00000104856 CDS Human protein_coding chr19:45537777 chr19:45537779 synonymous SNV . 0 23 hm5C_associated_SNPs_81923 0 0 0 0 2 RELB chr19:45537786 5'GT 45537786 Upstream 8bp
chr14 51058280 51058280 1 + G A LUAD 51058277 + 51058257 51058297 41 CAGTGTTATTGATGGATACTCAGGGAACCTTTGATAGTCAG CAGTGTTATTGATGGATACTCAGAGAACCTTTGATAGTCAG < 41bp 0.763378706140847 0.543349585012427 0.9239848 0.8563832 prediction 0.44005824225684 Functional Loss - ATL1 ENSG00000198513 CDS Human protein_coding chr14:51058277 chr14:51058280 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_81924 0 0 0 0 2 ATL1 chr14:51058253 3'AG 51058253 Downstream 28bp
chr14 51058280 51058280 1 + G A LUAD 51058277 + 51058257 51058297 41 CAGTGTTATTGATGGATACTCAGGGAACCTTTGATAGTCAG CAGTGTTATTGATGGATACTCAGAGAACCTTTGATAGTCAG < 41bp 0.763378706140847 0.543349585012427 0.9239848 0.8563832 prediction 0.44005824225684 Functional Loss - ATL1 ENSG00000198513 CDS Human protein_coding chr14:51058277 chr14:51058280 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_81924 0 0 0 0 2 ATL1 chr14:51058357 5'GT 51058357 Upstream 78bp
chr1 119923771 119923771 1 + T C KIRC 119923770 + 119923750 119923790 41 AGAGCAGCTGTCTAAGTCAACTCGGGATTTTATTGAAGGTG AGAGCAGCTGTCTAAGTCAACCCGGGATTTTATTGAAGGTG < 41bp 0.780293246741363 0.560266018566136 0.27745685 0.235863 prediction 0.440054456350453 Functional Loss - HAO2 ENSG00000116882 CDS Human protein_coding chr1:119923770 chr1:119923771 synonymous SNV . 0 22 hm5C_associated_SNPs_81926 0 0 0 0 2 HAO2 chr1:119923701 3'AG 119923701 Downstream 71bp
chr1 119923771 119923771 1 + T C KIRC 119923770 + 119923750 119923790 41 AGAGCAGCTGTCTAAGTCAACTCGGGATTTTATTGAAGGTG AGAGCAGCTGTCTAAGTCAACCCGGGATTTTATTGAAGGTG < 41bp 0.780293246741363 0.560266018566136 0.27745685 0.235863 prediction 0.440054456350453 Functional Loss - HAO2 ENSG00000116882 CDS Human protein_coding chr1:119923770 chr1:119923771 synonymous SNV . 0 22 hm5C_associated_SNPs_81926 0 0 0 0 2 HAO2 chr1:119923839 5'GT 119923839 Upstream 69bp
chr6 157963706 157963706 1 + C T UCEC 157963704 + 157963684 157963724 41 GTGATGGGGACCCTGCTCCGCACCAGCTTCAGCGACCCCGG GTGATGGGGACCCTGCTCCGCATCAGCTTCAGCGACCCCGG < 41bp 0.851088426737259 0.631065364805458 0.08821282 0.038954765 prediction 0.440046123863602 Functional Loss - ZDHHC14 ENSG00000175048 CDS Human protein_coding chr6:157963704 chr6:157963706 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_81931 0 0 1 0 1 ZDHHC14 chr6:157963777 5'GT 157963777 Upstream 72bp
chr10 126301921 126301921 1 + G C BLCA 126301920 + 126301900 126301940 41 GACCTGCTGCTGCAGCACGCCGACAAGTGATGGCCTCCTGG GACCTGCTGCTGCAGCACGCCCACAAGTGATGGCCTCCTGG < 41bp 0.720020128623994 0.404268198618809 0.31235343 0.13153058 prediction 0.440040257247988 Functional Loss - LHPP ENSG00000107902 CDS Human protein_coding chr10:126301920 chr10:126301921 nonsynonymous SNV 0.456 0 22 hm5C_associated_SNPs_81933 0 0 0 0 1 LHPP chr10:126301833 3'AG 126301833 Downstream 89bp
chr1 227921164 227921164 1 - C T SKCM 227921167 - 227921147 227921187 41 CTTGGAGATCACGCAGGAAGCGGGCGAGATGGTGTTTGTGC CTTGGAGATCACGCAGGAAGCGGACGAGATGGTGTTTGTGC < 41bp 0.782346928788041 0.562327287721982 0.8781955 0.3968026 prediction 0.440039282132117 Functional Loss - JMJD4 ENSG00000081692 CDS Human protein_coding chr1:227921167 chr1:227921164 nonsynonymous SNV 0.988 5 24 hm5C_associated_SNPs_81934 0 0 1 0 1 JMJD4 chr1:227921115 5'GT 227921115 Upstream 50bp
chr19 13059913 13059913 1 + G A STAD 13059910 + 13059890 13059930 41 GACAGGGAATTCCTGGGAGCCCCGAGCCGGAACACGGTTCT GACAGGGAATTCCTGGGAGCCCCAAGCCGGAACACGGTTCT < 41bp 0.776821132179272 0.556802982674916 0.15286595 0.080964655 prediction 0.440036299008713 Functional Loss - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13059910 chr19:13059913 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_81935 0 0 1 0 2 RAD23A chr19:13059895 3'AG 13059895 Downstream 19bp
chr19 13059913 13059913 1 + G A STAD 13059910 + 13059890 13059930 41 GACAGGGAATTCCTGGGAGCCCCGAGCCGGAACACGGTTCT GACAGGGAATTCCTGGGAGCCCCAAGCCGGAACACGGTTCT < 41bp 0.776821132179272 0.556802982674916 0.15286595 0.080964655 prediction 0.440036299008713 Functional Loss - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13059910 chr19:13059913 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_81935 0 0 1 0 2 RAD23A chr19:13059973 5'GT 13059973 Upstream 61bp
chr5 167868746 167868746 1 + G A GBM 167868743 + 167868723 167868763 41 TCTGGGGAGAGGTCGACTCGCTGGTACAACCTTCTCAGCTA TCTGGGGAGAGGTCGACTCGCTGATACAACCTTCTCAGCTA < 41bp 0.791552811975011 0.571536552248036 0.23954904 0.14739144 prediction 0.440032519453951 Functional Loss - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167868743 chr5:167868746 stopgain 1.000 0 24 hm5C_associated_SNPs_81936 0 0 0 0 2 WWC1 chr5:167868687 3'AG 167868687 Downstream 60bp
chr5 167868746 167868746 1 + G A GBM 167868743 + 167868723 167868763 41 TCTGGGGAGAGGTCGACTCGCTGGTACAACCTTCTCAGCTA TCTGGGGAGAGGTCGACTCGCTGATACAACCTTCTCAGCTA < 41bp 0.791552811975011 0.571536552248036 0.23954904 0.14739144 prediction 0.440032519453951 Functional Loss - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167868743 chr5:167868746 stopgain 1.000 0 24 hm5C_associated_SNPs_81936 0 0 0 0 2 WWC1 chr5:167868839 5'GT 167868839 Upstream 94bp
chr1 180235590 180235590 1 + G A SKCM 180235587 + 180235567 180235607 41 CCCCCAACCCAGGTGGTCCGCAAGGCCCAGGACTTTGTCTA CCCCCAACCCAGGTGGTCCGCAAAGCCCAGGACTTTGTCTA < 41bp 0.720014592448825 0.479160544588006 0.8655029 0.44495192 prediction 0.440029184897651 Functional Loss - LHX4 ENSG00000121454 CDS Human protein_coding chr1:180235587 chr1:180235590 synonymous SNV . 0 24 hm5C_associated_SNPs_81938 0 0 0 0 1 LHX4 chr1:180235527 3'AG 180235527 Downstream 64bp
chr7 129989825 129989825 1 + T C HNSC 129989824 + 129989804 129989844 41 TTGGTGAACAAGGTGGACTTCTGGCGTGGCCCAGCCAGGCC TTGGTGAACAAGGTGGACTTCCGGCGTGGCCCAGCCAGGCC < 41bp 0.788236670020568 0.568224194934002 0.35683566 0.8834077 prediction 0.440024950173131 Functional Loss - CPA5 ENSG00000158525 CDS Human protein_coding chr7:129989824 chr7:129989825 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_81939 0 0 0 0 1 CPA5 chr7:129989816 3'AG 129989816 Downstream 10bp
chr22 42422817 42422817 1 + G T LUSC 42422815 + 42422795 42422835 41 AGGATATGGAGCCCCACCTCCCGGATACGGAGCCCCACCTG AGGATATGGAGCCCCACCTCCCTGATACGGAGCCCCACCTG < 41bp 0.908785256591483 0.688775207034639 0.8825591 0.17614022 prediction 0.440020099113688 Functional Loss - WBP2NL ENSG00000183066 CDS Human protein_coding chr22:42422815 chr22:42422817 stopgain 0.000 0 23 hm5C_associated_SNPs_81941 0 0 0 0 1 WBP2NL chr22:42422770 3'AG 42422770 Downstream 48bp
chr2 241513198 241513198 1 + C T UCEC 241513196 + 241513176 241513216 41 TCTCTGCATGCACCAGGAGCCGCGTGTGGGCCGAGCCATGC TCTCTGCATGCACCAGGAGCCGTGTGTGGGCCGAGCCATGC < 41bp 0.790527383019795 0.57051925662761 0.4141912 0.33074313 prediction 0.44001625278437 Functional Loss - RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241513196 chr2:241513198 synonymous SNV . 0 23 hm5C_associated_SNPs_81942 0 0 1 0 1 RNPEPL1 chr2:241513192 3'AG 241513192 Downstream 7bp
chr7 135347333 135347333 1 + C T READ 135347331 + 135347311 135347351 41 CCCTCCCCACCGACATCATGCTCCAGTTCCTGGTGAGTGGA CCCTCCCCACCGACATCATGCTTCAGTTCCTGGTGAGTGGA < 41bp 0.803291316555495 0.583285482855387 0.31917122 0.089933336 prediction 0.440011667400217 Functional Loss - C7orf73 ENSG00000243317 CDS Human protein_coding chr7:135347331 chr7:135347333 synonymous SNV . 0 23 hm5C_associated_SNPs_81943 0 0 1 0 1 C7orf73 chr7:135347342 5'GT 135347342 Upstream 10bp
chr20 43945170 43945170 1 + C T UCEC 43945168 + 43945148 43945188 41 AGCTCCACGGAGAGAACTTCCACGCGGGGCTCAAGGTGTGG AGCTCCACGGAGAGAACTTCCATGCGGGGCTCAAGGTGTGG < 41bp 0.720004968108432 0.456842514651415 0.40354156 0.58948207 prediction 0.440009936216864 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43945168 chr20:43945170 synonymous SNV . 0 23 hm5C_associated_SNPs_81945 0 0 0 0 3 RBPJL chr20:43945117 3'AG 43945117 Downstream 54bp
chr20 43945170 43945170 1 + C T UCEC 43945168 + 43945148 43945188 41 AGCTCCACGGAGAGAACTTCCACGCGGGGCTCAAGGTGTGG AGCTCCACGGAGAGAACTTCCATGCGGGGCTCAAGGTGTGG < 41bp 0.720004968108432 0.456842514651415 0.40354156 0.58948207 prediction 0.440009936216864 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43945168 chr20:43945170 synonymous SNV . 0 23 hm5C_associated_SNPs_81945 0 0 0 0 3 RBPJL chr20:43945220 5'GT 43945220 Upstream 51bp
chr20 43945170 43945170 1 + C T UCEC 43945168 + 43945148 43945188 41 AGCTCCACGGAGAGAACTTCCACGCGGGGCTCAAGGTGTGG AGCTCCACGGAGAGAACTTCCATGCGGGGCTCAAGGTGTGG < 41bp 0.720004968108432 0.456842514651415 0.40354156 0.58948207 prediction 0.440009936216864 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43945168 chr20:43945170 synonymous SNV . 0 23 hm5C_associated_SNPs_81945 0 0 0 0 3 RBPJL chr20:43945230 5'GT 43945230 Upstream 61bp
chr22 21400375 21400375 1 + G A rs9625412 21400372 + 21400352 21400392 41 CAGGGGTCCCCGAGGCCGAGCAGGGTCCCGAGGCCAATTGG CAGGGGTCCCCGAGGCCGAGCAGAGTCCCGAGGCCAATTGG < 41bp 0.80393443229686 0.58392950759966 0.9363565 0.91786134 prediction 0.440009849394401 Functional Loss - LRRC74B ENSG00000187905 CDS Human protein_coding chr22:21400372 chr22:21400375 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_81946 0 0 0 0 1 LRRC74B chr22:21400414 5'GT 21400414 Upstream 40bp
chr2 135922183 135922183 1 + G A COAD 135922180 + 135922160 135922200 41 CTAGGTTTGTGAGTTGCCTGCTGGAGCAGCCTGAAGTGTTA CTAGGTTTGTGAGTTGCCTGCTGAAGCAGCCTGAAGTGTTA < 41bp 0.769768686830159 0.54977212660862 0.371603 0.24734622 prediction 0.439993120443077 Functional Loss - RAB3GAP1 ENSG00000115839 CDS Human protein_coding chr2:135922180 chr2:135922183 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_81949 0 0 1 0 1 RAB3GAP1 chr2:135922164 3'AG 135922164 Downstream 20bp
chr14 59789696 59789696 1 + G A UCEC 59789693 + 59789673 59789713 41 GGACTACGAGACCTCAGAGTCTCGAATACATACTTCTCTCA GGACTACGAGACCTCAGAGTCTCAAATACATACTTCTCTCA < 41bp 0.731041934430189 0.511045683555108 0.5797049 0.38841084 prediction 0.439992501750161 Functional Loss - DAAM1 ENSG00000100592 CDS Human protein_coding chr14:59789693 chr14:59789696 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_81950 0 0 1 0 1 DAAM1 chr14:59789610 3'AG 59789610 Downstream 87bp
chr3 129218838 129218838 1 + G C COAD 129218834 + 129218814 129218854 41 AATATCAAGGAGCCCAAAGCCGCCGTGGAGATGTACATCTC AATATCAAGGAGCCCAAAGCCGCCCTGGAGATGTACATCTC < 41bp 0.842184496620394 0.622188713926055 0.22062436 0.10438681 prediction 0.439991565388676 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129218834 chr3:129218838 nonsynonymous SNV 0.931 2 25 hm5C_associated_SNPs_81951 0 0 1 0 2 IFT122 chr3:129218745 3'AG 129218745 Downstream 94bp
chr3 129218838 129218838 1 + G C COAD 129218834 + 129218814 129218854 41 AATATCAAGGAGCCCAAAGCCGCCGTGGAGATGTACATCTC AATATCAAGGAGCCCAAAGCCGCCCTGGAGATGTACATCTC < 41bp 0.842184496620394 0.622188713926055 0.22062436 0.10438681 prediction 0.439991565388676 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129218834 chr3:129218838 nonsynonymous SNV 0.931 2 25 hm5C_associated_SNPs_81951 0 0 1 0 2 IFT122 chr3:129218911 5'GT 129218911 Upstream 74bp
chr19 39961144 39961144 1 + T C UCEC 39961143 + 39961123 39961163 41 CTGTGGGTGTCATCGTGCGACTAGAACGGGAGACCTTCCAG CTGTGGGTGTCATCGTGCGACCAGAACGGGAGACCTTCCAG < 41bp 0.817427616005625 0.59743301441947 0.06866333 0.109638184 prediction 0.439989203172309 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39961143 chr19:39961144 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_81952 0 0 1 0 1 SUPT5H chr19:39961163 5'GT 39961163 Upstream 20bp
chr16 53476733 53476733 1 + G A COAD 53476730 + 53476710 53476750 41 AGGACATCTTTAAATACCCTCAAGAGGAGCAACCTCGTCAG AGGACATCTTTAAATACCCTCAAAAGGAGCAACCTCGTCAG < 41bp 0.71999264756288 0.480715422514686 0.37848622 0.22162905 prediction 0.439985295125759 Functional Loss - RBL2 ENSG00000103479 CDS Human protein_coding chr16:53476730 chr16:53476733 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_81954 0 0 1 0 1 RBL2 chr16:53476770 5'GT 53476770 Upstream 38bp
chr6 88117723 88117723 1 + G C rs538728543 88117719 + 88117699 88117739 41 CCATGGTTACGCGGCGGTGGCTGCGAGCGCCCAACTGCTCC CCATGGTTACGCGGCGGTGGCTGCCAGCGCCCAACTGCTCC < 41bp 0.861391484187568 0.641408274733606 0.18604615 0.02284956 prediction 0.439966418907923 Functional Loss - CFAP206 ENSG00000272514 UTR5 Human other chr6:88117719 chr6:88117723 . . 0 25 hm5C_associated_SNPs_81960 0 0 0 0 1 CFAP206 chr6:88117807 5'GT 88117807 Upstream 85bp
chr17 73518328 73518328 1 + A C rs77247739 73518327 + 73518307 73518347 41 AGGAGCTGCTGCAGCGGCGGCAGGTGCAGAGGAGCCAGCGC AGGAGCTGCTGCAGCGGCGGCCGGTGCAGAGGAGCCAGCGC < 41bp 0.809736739892591 0.589753701199027 0.9117723 0.89641345 prediction 0.439966077387127 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73518327 chr17:73518328 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_81961 2 0 1 0 1 TSEN54 chr17:73518414 5'GT 73518414 Upstream 87bp
chr2 174229618 174229618 1 + G A UCEC 174229615 + 174229595 174229635 41 CCTCTTACCAGGTCAAGGTCCCGGATCCTCGGGTCCCTTGA CCTCTTACCAGGTCAAGGTCCCGAATCCTCGGGTCCCTTGA < 41bp 0.793874194404963 0.573892009304712 0.9051591 0.31611276 prediction 0.439964370200502 Functional Loss - CDCA7 ENSG00000144354 CDS Human protein_coding chr2:174229615 chr2:174229618 synonymous SNV . 0 24 hm5C_associated_SNPs_81963 0 0 1 0 2 CDCA7 chr2:174229523 3'AG 174229523 Downstream 96bp
chr2 174229618 174229618 1 + G A UCEC 174229615 + 174229595 174229635 41 CCTCTTACCAGGTCAAGGTCCCGGATCCTCGGGTCCCTTGA CCTCTTACCAGGTCAAGGTCCCGAATCCTCGGGTCCCTTGA < 41bp 0.793874194404963 0.573892009304712 0.9051591 0.31611276 prediction 0.439964370200502 Functional Loss - CDCA7 ENSG00000144354 CDS Human protein_coding chr2:174229615 chr2:174229618 synonymous SNV . 0 24 hm5C_associated_SNPs_81963 0 0 1 0 2 CDCA7 chr2:174229717 5'GT 174229717 Upstream 100bp
chr16 47732386 47732386 1 + G A CESC 47732383 + 47732363 47732403 41 TTATGGTTGTATCCATTGTACTGGAAAGAAACCCCGAGCTA TTATGGTTGTATCCATTGTACTGAAAAGAAACCCCGAGCTA < 41bp 0.752498597453183 0.532516615092335 0.14128703 0.060269177 prediction 0.439963964721696 Functional Loss - PHKB ENSG00000102893 CDS Human protein_coding chr16:47732383 chr16:47732386 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_81965 0 0 0 0 1 PHKB chr16:47732359 3'AG 47732359 Downstream 28bp
chr17 61559067 61559067 1 + G A UCEC 61559064 + 61559044 61559084 41 CGGGAAGTGGTGTGCCACGCCTCGGCTTGGGACTTCTACAA CGGGAAGTGGTGTGCCACGCCTCAGCTTGGGACTTCTACAA < 41bp 0.786152941804533 0.566173462874238 0.073843926 0.077775955 prediction 0.43995895786059 Functional Loss - ACE ENSG00000159640 CDS Human protein_coding chr17:61559064 chr17:61559067 synonymous SNV . 0 24 hm5C_associated_SNPs_81966 0 0 0 0 1 ACE chr17:61559099 5'GT 61559099 Upstream 33bp
chr1 154961316 154961316 1 + G A UCEC 154961313 + 154961293 154961333 41 CCAGTGAGGCTGTATACAAACTCGCTGAATCAGGTAGGGAC CCAGTGAGGCTGTATACAAACTCACTGAATCAGGTAGGGAC < 41bp 0.785085960934378 0.565106560027977 0.08895621 0.053611994 prediction 0.439958801812803 Functional Loss - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154961313 chr1:154961316 nonsynonymous SNV 0.902 0 24 hm5C_associated_SNPs_81968 0 0 1 0 1 FLAD1 chr1:154961325 5'GT 154961325 Upstream 10bp
chr7 101188637 101188637 1 + G A SKCM 101188634 + 101188614 101188654 41 TGCAGGGCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTG TGCAGGGCTCCTGGGGCCTCCAGAGCCCCGTGGGCTTCCTG < 41bp 0.719974148038375 0.476679518374228 0.8803413 0.77791715 prediction 0.43994829607675 Functional Loss - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188634 chr7:101188637 nonsynonymous SNV 0.952 4 24 hm5C_associated_SNPs_81971 0 0 0 0 1 COL26A1 chr7:101188619 3'AG 101188619 Downstream 19bp
chr1 179063290 179063290 1 + G A COAD 179063287 + 179063267 179063307 41 GTTGCTCAAGGCTGGATGGTCCCGGGAAGAAATTACGATGG GTTGCTCAAGGCTGGATGGTCCCAGGAAGAAATTACGATGG < 41bp 0.790186883585944 0.570216803109383 0.43342146 0.14947075 prediction 0.439940160953121 Functional Loss - TOR3A ENSG00000186283 CDS Human protein_coding chr1:179063287 chr1:179063290 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_81973 0 0 1 0 2 TOR3A chr1:179063228 3'AG 179063228 Downstream 63bp
chr1 179063290 179063290 1 + G A COAD 179063287 + 179063267 179063307 41 GTTGCTCAAGGCTGGATGGTCCCGGGAAGAAATTACGATGG GTTGCTCAAGGCTGGATGGTCCCAGGAAGAAATTACGATGG < 41bp 0.790186883585944 0.570216803109383 0.43342146 0.14947075 prediction 0.439940160953121 Functional Loss - TOR3A ENSG00000186283 CDS Human protein_coding chr1:179063287 chr1:179063290 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_81973 0 0 1 0 2 TOR3A chr1:179063352 5'GT 179063352 Upstream 63bp
chr8 67062093 67062093 1 + G T GBM 67062091 + 67062071 67062111 41 AATTCAGTTTATGGATGAGCCAGAAATGGCAGTGTTTCTGC AATTCAGTTTATGGATGAGCCATAAATGGCAGTGTTTCTGC < 41bp 0.719969248399817 0.379881582411307 0.39141065 0.07282889 prediction 0.439938496799634 Functional Loss - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67062091 chr8:67062093 stopgain 1.000 1 23 hm5C_associated_SNPs_81974 0 0 0 0 1 TRIM55 chr8:67062113 5'GT 67062113 Upstream 21bp
chr17 40714724 40714724 1 + G A SARC 40714721 + 40714701 40714741 41 CGCCTGGCCTCCATCCTGACCTCGGCGGCCCGGCTGGTGAA CGCCTGGCCTCCATCCTGACCTCAGCGGCCCGGCTGGTGAA < 41bp 0.809802780267994 0.589837274764622 0.24511829 0.14010572 prediction 0.439931011006742 Functional Loss - COASY ENSG00000068120 CDS Human protein_coding chr17:40714721 chr17:40714724 synonymous SNV . 0 24 hm5C_associated_SNPs_81975 0 0 1 0 1 COASY chr17:40714630 3'AG 40714630 Downstream 95bp
chrX 38271214 38271214 1 + G A UCEC 38271211 + 38271191 38271231 41 TCTTTTATTCTCCTCGATCACTAGTGTTCCCAGAGGCAGAA TCTTTTATTCTCCTCGATCACTAATGTTCCCAGAGGCAGAA < 41bp 0.72984868413419 0.509896429323332 0.05944258 0.09240818 prediction 0.439904509621716 Functional Loss - OTC ENSG00000036473 CDS Human protein_coding chrX:38271211 chrX:38271214 nonsynonymous SNV 0.993 5 24 hm5C_associated_SNPs_81981 0 0 0 0 2 OTC chrX:38271115 3'AG 38271115 Downstream 100bp
chrX 38271214 38271214 1 + G A UCEC 38271211 + 38271191 38271231 41 TCTTTTATTCTCCTCGATCACTAGTGTTCCCAGAGGCAGAA TCTTTTATTCTCCTCGATCACTAATGTTCCCAGAGGCAGAA < 41bp 0.72984868413419 0.509896429323332 0.05944258 0.09240818 prediction 0.439904509621716 Functional Loss - OTC ENSG00000036473 CDS Human protein_coding chrX:38271211 chrX:38271214 nonsynonymous SNV 0.993 5 24 hm5C_associated_SNPs_81981 0 0 0 0 2 OTC chrX:38271252 5'GT 38271252 Upstream 39bp
chr11 108005920 108005920 1 + G A BLCA 108005917 + 108005897 108005937 41 CATAAACAAAGTTTGTGCTTCAGGAATGAAAGCCATCATGA CATAAACAAAGTTTGTGCTTCAGAAATGAAAGCCATCATGA < 41bp 0.743932592973066 0.523991854642983 0.34841305 0.17269042 prediction 0.439881476660167 Functional Loss - ACAT1 ENSG00000075239 CDS Human protein_coding chr11:108005917 chr11:108005920 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_81987 0 0 1 0 2 ACAT1 chr11:108005869 3'AG 108005869 Downstream 52bp
chr11 108005920 108005920 1 + G A BLCA 108005917 + 108005897 108005937 41 CATAAACAAAGTTTGTGCTTCAGGAATGAAAGCCATCATGA CATAAACAAAGTTTGTGCTTCAGAAATGAAAGCCATCATGA < 41bp 0.743932592973066 0.523991854642983 0.34841305 0.17269042 prediction 0.439881476660167 Functional Loss - ACAT1 ENSG00000075239 CDS Human protein_coding chr11:108005917 chr11:108005920 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_81987 0 0 1 0 2 ACAT1 chr11:108005969 5'GT 108005969 Upstream 50bp
chr8 70541858 70541858 1 + G A LUSC 70541855 + 70541835 70541875 41 GGGGGAAGAGTGCAGCCTGCCTGGCCTCACTTGCTTCACGC GGGGGAAGAGTGCAGCCTGCCTGACCTCACTTGCTTCACGC < 41bp 0.719938716851262 0.48286653344113 0.16412109 0.121774584 prediction 0.439877433702524 Functional Loss - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70541855 chr8:70541858 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_81989 0 0 0 0 1 SULF1 chr8:70541914 5'GT 70541914 Upstream 57bp
chr1 2409941 2409941 1 + G A BLCA 2409938 + 2409918 2409958 41 AGCGGTGCATGGGTGCCATGCAAGAGGGGATGCAGATGGTG AGCGGTGCATGGGTGCCATGCAAAAGGGGATGCAGATGGTG < 41bp 0.719936752135142 0.473106043006189 0.42415884 0.36004484 prediction 0.439873504270283 Functional Loss - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2409938 chr1:2409941 nonsynonymous SNV 0.987 0 24 hm5C_associated_SNPs_81990 0 0 0 0 1 PLCH2 chr1:2409915 3'AG 2409915 Downstream 27bp
chr11 64877234 64877234 1 + C T UCEC 64877232 + 64877212 64877252 41 TGCAGAGGCCAGGGAAACGGCGCGGCGGCTGCTGACCCACT TGCAGAGGCCAGGGAAACGGCGTGGCGGCTGCTGACCCACT < 41bp 0.811027065731753 0.591092441898095 0.88232434 0.84767616 prediction 0.439869247667316 Functional Loss - VPS51 ENSG00000149823 CDS Human protein_coding chr11:64877232 chr11:64877234 nonsynonymous SNV 0.904 3 23 hm5C_associated_SNPs_81991 0 0 1 0 1 VPS51 chr11:64877177 3'AG 64877177 Downstream 58bp
chr8 66594622 66594622 1 + G A COAD 66594619 + 66594599 66594639 41 TAGGAAGCCATATGGTTCGTCTCGAAGTATCGTAAGGAAAA TAGGAAGCCATATGGTTCGTCTCAAAGTATCGTAAGGAAAA < 41bp 0.71992928239857 0.497647581562761 0.34032854 0.09654218 prediction 0.439858564797141 Functional Loss - MTFR1 ENSG00000066855 CDS Human protein_coding chr8:66594619 chr8:66594622 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_81994 0 0 1 0 2 MTFR1 chr8:66594588 3'AG 66594588 Downstream 35bp
chr8 66594622 66594622 1 + G A COAD 66594619 + 66594599 66594639 41 TAGGAAGCCATATGGTTCGTCTCGAAGTATCGTAAGGAAAA TAGGAAGCCATATGGTTCGTCTCAAAGTATCGTAAGGAAAA < 41bp 0.71992928239857 0.497647581562761 0.34032854 0.09654218 prediction 0.439858564797141 Functional Loss - MTFR1 ENSG00000066855 CDS Human protein_coding chr8:66594619 chr8:66594622 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_81994 0 0 1 0 2 MTFR1 chr8:66594686 5'GT 66594686 Upstream 65bp
chr1 87041109 87041109 1 + C T SKCM 87041106 + 87041086 87041126 41 AGCAGCAAATTCTTCTGTGCCTCCAATCACAGTGAATGCTA AGCAGCAAATTCTTCTGTGCCTCTAATCACAGTGAATGCTA < 41bp 0.765005958899114 0.545078748267452 0.9542742 0.7784927 prediction 0.439854421263324 Functional Loss - CLCA4 ENSG00000016602 CDS Human protein_coding chr1:87041106 chr1:87041109 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_81996 0 0 0 0 1 CLCA4 chr1:87041015 3'AG 87041015 Downstream 95bp
chr8 91837018 91837018 1 + C T rs199995506 91837016 + 91836996 91837036 41 TTCTCAGTGGAGAAGAATTACACGAGCTTTTCCATACCATT TTCTCAGTGGAGAAGAATTACATGAGCTTTTCCATACCATT < 41bp 0.719922072458123 0.442278402059179 0.30888614 0.04210484 prediction 0.439844144916246 Functional Loss - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91837016 chr8:91837018 synonymous SNV . 0 23 hm5C_associated_SNPs_81997 0 0 0 0 2 NECAB1 chr8:91836945 3'AG 91836945 Downstream 74bp
chr8 91837018 91837018 1 + C T rs199995506 91837016 + 91836996 91837036 41 TTCTCAGTGGAGAAGAATTACACGAGCTTTTCCATACCATT TTCTCAGTGGAGAAGAATTACATGAGCTTTTCCATACCATT < 41bp 0.719922072458123 0.442278402059179 0.30888614 0.04210484 prediction 0.439844144916246 Functional Loss - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91837016 chr8:91837018 synonymous SNV . 0 23 hm5C_associated_SNPs_81997 0 0 0 0 2 NECAB1 chr8:91837053 5'GT 91837053 Upstream 36bp
chr7 29918676 29918676 1 + C T LUAD 29918674 + 29918654 29918694 41 GGTTCTGCAAACACACGAGGCGCGAGCACACCTCCCACCCT GGTTCTGCAAACACACGAGGCGTGAGCACACCTCCCACCCT < 41bp 0.843948176709147 0.624032445147169 0.07064822 0.02507326 prediction 0.439831463123957 Functional Loss - WIPF3 ENSG00000122574 CDS Human protein_coding chr7:29918674 chr7:29918676 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_81999 0 0 0 0 2 WIPF3 chr7:29918625 3'AG 29918625 Downstream 52bp
chr7 29918676 29918676 1 + C T LUAD 29918674 + 29918654 29918694 41 GGTTCTGCAAACACACGAGGCGCGAGCACACCTCCCACCCT GGTTCTGCAAACACACGAGGCGTGAGCACACCTCCCACCCT < 41bp 0.843948176709147 0.624032445147169 0.07064822 0.02507326 prediction 0.439831463123957 Functional Loss - WIPF3 ENSG00000122574 CDS Human protein_coding chr7:29918674 chr7:29918676 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_81999 0 0 0 0 2 WIPF3 chr7:29918756 5'GT 29918756 Upstream 81bp
chr5 43624221 43624221 1 + A T OV 43624217 + 43624197 43624237 41 GCAATTGTTCGAGGATTTGACACAAGGTGAGTGCTTTACTA GCAATTGTTCGAGGATTTGACACATGGTGAGTGCTTTACTA < 41bp 0.719913542347125 0.388250298961748 0.18346584 0.20333555 prediction 0.439827084694251 Functional Loss - NNT ENSG00000112992 CDS Human protein_coding chr5:43624217 chr5:43624221 stopgain 0.980 1 25 hm5C_associated_SNPs_82000 0 0 1 0 2 NNT chr5:43624134 3'AG 43624134 Downstream 88bp
chr5 43624221 43624221 1 + A T OV 43624217 + 43624197 43624237 41 GCAATTGTTCGAGGATTTGACACAAGGTGAGTGCTTTACTA GCAATTGTTCGAGGATTTGACACATGGTGAGTGCTTTACTA < 41bp 0.719913542347125 0.388250298961748 0.18346584 0.20333555 prediction 0.439827084694251 Functional Loss - NNT ENSG00000112992 CDS Human protein_coding chr5:43624217 chr5:43624221 stopgain 0.980 1 25 hm5C_associated_SNPs_82000 0 0 1 0 2 NNT chr5:43624222 5'GT 43624222 Upstream 2bp
chr11 125514440 125514440 1 + C T HNSC 125514438 + 125514418 125514458 41 GCGGTTGGTCAAAAGAATGACACGATTCTTTACCAAATTGG GCGGTTGGTCAAAAGAATGACATGATTCTTTACCAAATTGG < 41bp 0.719910668102818 0.427589731881869 0.051676214 0.10720557 prediction 0.439821336205637 Functional Loss - CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125514438 chr11:125514440 stopgain 0.997 1 23 hm5C_associated_SNPs_82002 1 0 1 2 2 CHEK1 chr11:125514407 3'AG 125514407 Downstream 34bp
chr11 125514440 125514440 1 + C T HNSC 125514438 + 125514418 125514458 41 GCGGTTGGTCAAAAGAATGACACGATTCTTTACCAAATTGG GCGGTTGGTCAAAAGAATGACATGATTCTTTACCAAATTGG < 41bp 0.719910668102818 0.427589731881869 0.051676214 0.10720557 prediction 0.439821336205637 Functional Loss - CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125514438 chr11:125514440 stopgain 0.997 1 23 hm5C_associated_SNPs_82002 1 0 1 2 2 CHEK1 chr11:125514538 5'GT 125514538 Upstream 99bp
chr11 125514441 125514441 1 + G A STAD 125514438 + 125514418 125514458 41 GCGGTTGGTCAAAAGAATGACACGATTCTTTACCAAATTGG GCGGTTGGTCAAAAGAATGACACAATTCTTTACCAAATTGG < 41bp 0.719910668102818 0.493940644466431 0.051676214 0.036723524 prediction 0.439821336205637 Functional Loss - CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125514438 chr11:125514441 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_82003 0 0 1 3 2 CHEK1 chr11:125514407 3'AG 125514407 Downstream 35bp
chr11 125514441 125514441 1 + G A STAD 125514438 + 125514418 125514458 41 GCGGTTGGTCAAAAGAATGACACGATTCTTTACCAAATTGG GCGGTTGGTCAAAAGAATGACACAATTCTTTACCAAATTGG < 41bp 0.719910668102818 0.493940644466431 0.051676214 0.036723524 prediction 0.439821336205637 Functional Loss - CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125514438 chr11:125514441 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_82003 0 0 1 3 2 CHEK1 chr11:125514538 5'GT 125514538 Upstream 98bp
chr11 65046230 65046230 1 + G A SKCM 65046227 + 65046207 65046247 41 TCCCTCCCAGAAATACAACTCACGAAGTAACCGAGGAGAAG TCCCTCCCAGAAATACAACTCACAAAGTAACCGAGGAGAAG < 41bp 0.763213696872963 0.543303126571873 0.06153956 0.028155416 prediction 0.43982114060218 Functional Loss - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65046227 chr11:65046230 nonsynonymous SNV 0.642 4 24 hm5C_associated_SNPs_82005 0 0 1 0 1 POLA2 chr11:65046201 3'AG 65046201 Downstream 30bp
chr20 1918052 1918052 1 + G A rs149536101 1918049 + 1918029 1918069 41 GCTGCGGAGCCCAACAACCACACGGAGTATGCCAGCATTCA GCTGCGGAGCCCAACAACCACACAGAGTATGCCAGCATTCA < 41bp 0.734584313734406 0.514676093990188 0.313592 0.06278321 prediction 0.439816439488437 Functional Loss - SIRPA ENSG00000198053 CDS Human protein_coding chr20:1918049 chr20:1918052 synonymous SNV . 0 24 hm5C_associated_SNPs_82009 0 0 0 0 1 SIRPA chr20:1917966 3'AG 1917966 Downstream 87bp
chr2 98351867 98351867 1 + G A UCEC 98351864 + 98351844 98351884 41 GCCAGGCCGAGGCCCTCATGCTGGTCATGGAGATGGCTGGG GCCAGGCCGAGGCCCTCATGCTGATCATGGAGATGGCTGGG < 41bp 0.799674692356944 0.579770270446972 0.15498129 0.20240214 prediction 0.439808843819943 Functional Loss - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98351864 chr2:98351867 nonsynonymous SNV 0.985 1 24 hm5C_associated_SNPs_82010 0 0 0 1 1 ZAP70 chr2:98351919 5'GT 98351919 Upstream 53bp
chr17 37880998 37880998 1 + G T READ 37880995 + 37880975 37881015 41 CCAGGAAGCATACGTGATGGCTGGTGTGGGCTCCCCATATG CCAGGAAGCATACGTGATGGCTGTTGTGGGCTCCCCATATG < 41bp 0.719899938777204 0.319859359052074 0.22512871 0.057007223 prediction 0.439799877554409 Functional Loss - ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37880995 chr17:37880998 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_82013 1 0 1 0 1 ERBB2 chr17:37880979 3'AG 37880979 Downstream 20bp
chr9 131256869 131256869 1 + T C KIRP 131256868 + 131256848 131256888 41 GATCACGGAGGCGAAGCTGGCTGAGTGCCAAGACCAACTGC GATCACGGAGGCGAAGCTGGCCGAGTGCCAAGACCAACTGC < 41bp 0.719899608853385 0.483849862188544 0.59475064 0.803221 prediction 0.43979921770677 Functional Loss - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131256868 chr9:131256869 synonymous SNV . 0 22 hm5C_associated_SNPs_82014 0 0 1 0 2 ODF2 chr9:131256789 3'AG 131256789 Downstream 81bp
chr9 131256869 131256869 1 + T C KIRP 131256868 + 131256848 131256888 41 GATCACGGAGGCGAAGCTGGCTGAGTGCCAAGACCAACTGC GATCACGGAGGCGAAGCTGGCCGAGTGCCAAGACCAACTGC < 41bp 0.719899608853385 0.483849862188544 0.59475064 0.803221 prediction 0.43979921770677 Functional Loss - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131256868 chr9:131256869 synonymous SNV . 0 22 hm5C_associated_SNPs_82014 0 0 1 0 2 ODF2 chr9:131256947 5'GT 131256947 Upstream 79bp
chr20 47688946 47688946 1 + T C UCEC 47688945 + 47688925 47688965 41 CCTCGTTTTGTTACAGCCATCTGGAATTTACTAGTTACAAC CCTCGTTTTGTTACAGCCATCCGGAATTTACTAGTTACAAC < 41bp 0.803752547320013 0.583853613602159 0.10665175 0.17795935 prediction 0.439797867435709 Functional Loss - CSE1L ENSG00000124207 CDS Human protein_coding chr20:47688945 chr20:47688946 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_82015 0 0 1 0 1 CSE1L chr20:47688990 5'GT 47688990 Upstream 45bp
chrX 7066051 7066051 1 + A C rs1473666 7066050 + 7066030 7066070 41 GCCGACCGTCCCCACGCCCACACAAGACCGCCCTTACTGGA GCCGACCGTCCCCACGCCCACCCAAGACCGCCCTTACTGGA < 41bp 0.719897619245758 0.47217081045607 0.06346092 0.057985127 prediction 0.439795238491516 Functional Loss - STS ENSG00000130021 intronic Human protein_coding chrX:7066050 chrX:7066051 . . 0 22 hm5C_associated_SNPs_82016 0 0 0 0 1 PUDP chrX:7066124 5'GT 7066124 Upstream 74bp
chr19 50189926 50189926 1 + G A BLCA 50189923 + 50189903 50189943 41 TACATGGAGGACTACCTGACCGTGAAGACGGGCGAGGAGAT TACATGGAGGACTACCTGACCGTAAAGACGGGCGAGGAGAT < 41bp 0.774186850981738 0.55429505580407 0.27730918 0.1320759 prediction 0.439783590355334 Functional Loss - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50189923 chr19:50189926 synonymous SNV . 0 24 hm5C_associated_SNPs_82018 0 0 1 0 2 PRMT1 chr19:50189862 3'AG 50189862 Downstream 65bp
chr19 50189926 50189926 1 + G A BLCA 50189923 + 50189903 50189943 41 TACATGGAGGACTACCTGACCGTGAAGACGGGCGAGGAGAT TACATGGAGGACTACCTGACCGTAAAGACGGGCGAGGAGAT < 41bp 0.774186850981738 0.55429505580407 0.27730918 0.1320759 prediction 0.439783590355334 Functional Loss - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50189923 chr19:50189926 synonymous SNV . 0 24 hm5C_associated_SNPs_82018 0 0 1 0 2 PRMT1 chr19:50189983 5'GT 50189983 Upstream 58bp
chr10 71018677 71018677 1 + G A rs367554536 71018674 + 71018654 71018694 41 GACATCTGGACCCGATACGACACGGAGGTGGATGAGGGGTC GACATCTGGACCCGATACGACACAGAGGTGGATGAGGGGTC < 41bp 0.719891270203937 0.473087350563 0.12067929 0.04857853 prediction 0.439782540407875 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71018674 chr10:71018677 synonymous SNV . 0 24 hm5C_associated_SNPs_82019 0 0 0 1 1 HKDC1 chr10:71018715 5'GT 71018715 Upstream 39bp
chr10 71018676 71018676 1 + C T ESCA 71018674 + 71018654 71018694 41 GACATCTGGACCCGATACGACACGGAGGTGGATGAGGGGTC GACATCTGGACCCGATACGACATGGAGGTGGATGAGGGGTC < 41bp 0.719891270203937 0.438209251243332 0.12067929 0.1583133 prediction 0.439782540407875 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71018674 chr10:71018676 nonsynonymous SNV 0.037 2 23 hm5C_associated_SNPs_82020 0 0 0 1 1 HKDC1 chr10:71018715 5'GT 71018715 Upstream 40bp
chrX 67941513 67941513 1 + C T STAD 67941510 + 67941490 67941530 41 TGCCGAGGAAAACCAGATGACAGCAGGCAACCTGGCAGTGT TGCCGAGGAAAACCAGATGACAGTAGGCAACCTGGCAGTGT < 41bp 0.730333252948899 0.510447349019086 0.25334752 0.3294106 prediction 0.439771807859627 Functional Loss - STARD8 ENSG00000130052 CDS Human protein_coding chrX:67941510 chrX:67941513 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_82023 0 0 0 0 1 STARD8 chrX:67941588 5'GT 67941588 Upstream 76bp
chr16 47533770 47533770 1 + C T COAD 47533767 + 47533747 47533787 41 AAGATCCAGGACAGCCTATACTGCGCTGCTGGGGCCTGGGC AAGATCCAGGACAGCCTATACTGTGCTGCTGGGGCCTGGGC < 41bp 0.735149645846211 0.51526631854866 0.15710664 0.20696723 prediction 0.439766654595103 Functional Loss - PHKB ENSG00000102893 CDS Human protein_coding chr16:47533767 chr16:47533770 synonymous SNV . 0 24 hm5C_associated_SNPs_82027 2 0 1 0 1 PHKB chr16:47533805 5'GT 47533805 Upstream 36bp
chr5 75979011 75979011 1 + G T BLCA 75979009 + 75978989 75979029 41 TGAGTGAATTGCTGGGGTCGCTGGGAGAGGTGCCAACCGTG TGAGTGAATTGCTGGGGTCGCTTGGAGAGGTGCCAACCGTG < 41bp 0.719880031036971 0.378639867889876 0.87492925 0.7866291 prediction 0.439760062073942 Functional Loss - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75979009 chr5:75979011 synonymous SNV . 0 23 hm5C_associated_SNPs_82032 0 0 1 0 2 IQGAP2 chr5:75978940 3'AG 75978940 Downstream 72bp
chr5 75979011 75979011 1 + G T BLCA 75979009 + 75978989 75979029 41 TGAGTGAATTGCTGGGGTCGCTGGGAGAGGTGCCAACCGTG TGAGTGAATTGCTGGGGTCGCTTGGAGAGGTGCCAACCGTG < 41bp 0.719880031036971 0.378639867889876 0.87492925 0.7866291 prediction 0.439760062073942 Functional Loss - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75979009 chr5:75979011 synonymous SNV . 0 23 hm5C_associated_SNPs_82032 0 0 1 0 2 IQGAP2 chr5:75979042 5'GT 75979042 Upstream 32bp
chr22 30766905 30766905 1 + T C rs150773011 30766904 + 30766884 30766924 41 GGAGGATGAGCAGTGCCTGTCTGAGTGGGAGCACGACAAAC GGAGGATGAGCAGTGCCTGTCCGAGTGGGAGCACGACAAAC < 41bp 0.759769867911683 0.53989040732071 0.45357227 0.7013742 prediction 0.439758921181946 Functional Loss - CCDC157 ENSG00000187860 CDS Human protein_coding chr22:30766904 chr22:30766905 synonymous SNV . 0 22 hm5C_associated_SNPs_82033 0 0 0 0 1 CCDC157 chr22:30766939 5'GT 30766939 Upstream 35bp
chr19 3942129 3942129 1 + T C UCEC 3942128 + 3942108 3942148 41 AGGAGCTCTTCCGTGAAGTCCTGGAAGACATTCAGAACTCG AGGAGCTCTTCCGTGAAGTCCCGGAAGACATTCAGAACTCG < 41bp 0.801695367915689 0.581819208500796 0.18492839 0.27048138 prediction 0.439752318829786 Functional Loss - NMRK2 ENSG00000077009 CDS Human protein_coding chr19:3942128 chr19:3942129 nonsynonymous SNV 0.111 2 22 hm5C_associated_SNPs_82034 0 0 0 0 1 NMRK2 chr19:3942081 3'AG 3942081 Downstream 49bp
chr8 121519002 121519002 1 + G A rs141739990 121518999 + 121518979 121519019 41 GCTGGGCCACAAAGAGGGTCCTCGGGACTCAATCACATTGT GCTGGGCCACAAAGAGGGTCCTCAGGACTCAATCACATTGT < 41bp 0.757456590834446 0.537582139842029 0.30994546 0.18838656 prediction 0.439748901984835 Functional Loss - MTBP ENSG00000172167 CDS Human protein_coding chr8:121518999 chr8:121519002 nonsynonymous SNV 0.379 3 24 hm5C_associated_SNPs_82037 0 0 0 0 2 MTBP chr8:121518946 3'AG 121518946 Downstream 57bp
chr8 121519002 121519002 1 + G A rs141739990 121518999 + 121518979 121519019 41 GCTGGGCCACAAAGAGGGTCCTCGGGACTCAATCACATTGT GCTGGGCCACAAAGAGGGTCCTCAGGACTCAATCACATTGT < 41bp 0.757456590834446 0.537582139842029 0.30994546 0.18838656 prediction 0.439748901984835 Functional Loss - MTBP ENSG00000172167 CDS Human protein_coding chr8:121518999 chr8:121519002 nonsynonymous SNV 0.379 3 24 hm5C_associated_SNPs_82037 0 0 0 0 2 MTBP chr8:121519101 5'GT 121519101 Upstream 100bp
chr19 36159535 36159535 1 + C T COAD 36159533 + 36159513 36159553 41 GTGTGGGTGCCGCACTCTGCCGCCGCCGGTCCATGGTCCTC GTGTGGGTGCCGCACTCTGCCGTCGCCGGTCCATGGTCCTC < 41bp 0.837290224704274 0.617416457158892 0.04329115 0.03781429 prediction 0.439747535090764 Functional Loss - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36159533 chr19:36159535 synonymous SNV . 0 23 hm5C_associated_SNPs_82038 0 0 0 0 1 UPK1A chr19:36159556 5'GT 36159556 Upstream 22bp
chr17 78831640 78831640 1 + G A rs199634293 78831637 + 78831617 78831657 41 GTGCTGAAGCTGCTCCAGAGCTCGGCCCGAGAGCTGCGGCC GTGCTGAAGCTGCTCCAGAGCTCAGCCCGAGAGCTGCGGCC < 41bp 0.719862037444149 0.47693772021036 0.55467564 0.28743023 prediction 0.439724074888297 Functional Loss - RPTOR ENSG00000141564 CDS Human protein_coding chr17:78831637 chr17:78831640 synonymous SNV . 0 24 hm5C_associated_SNPs_82046 0 0 0 0 1 RPTOR chr17:78831590 3'AG 78831590 Downstream 51bp
chr2 73477497 73477497 1 + C T STAD 73477494 + 73477474 73477514 41 ACCTTCATTCTCCGTGGCGGCGCCGAGCAGTTTATGGAGGA ACCTTCATTCTCCGTGGCGGCGCTGAGCAGTTTATGGAGGA < 41bp 0.719854966169106 0.497406540312908 0.1812883 0.13086995 prediction 0.439709932338213 Functional Loss - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73477494 chr2:73477497 synonymous SNV . 0 24 hm5C_associated_SNPs_82050 0 0 1 0 2 CCT7 chr2:73477434 3'AG 73477434 Downstream 64bp
chr2 73477497 73477497 1 + C T STAD 73477494 + 73477474 73477514 41 ACCTTCATTCTCCGTGGCGGCGCCGAGCAGTTTATGGAGGA ACCTTCATTCTCCGTGGCGGCGCTGAGCAGTTTATGGAGGA < 41bp 0.719854966169106 0.497406540312908 0.1812883 0.13086995 prediction 0.439709932338213 Functional Loss - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73477494 chr2:73477497 synonymous SNV . 0 24 hm5C_associated_SNPs_82050 0 0 1 0 2 CCT7 chr2:73477566 5'GT 73477566 Upstream 70bp
chr9 4823599 4823599 1 + G A LUSC 4823596 + 4823576 4823616 41 GGACAAAATAACGAATGGTTCTCGAATTGAAATAAACCAAA GGACAAAATAACGAATGGTTCTCAAATTGAAATAAACCAAA < 41bp 0.726376220764811 0.506530293518198 0.43807048 0.049710095 prediction 0.439691854493226 Functional Loss - RCL1 ENSG00000120158 CDS Human protein_coding chr9:4823596 chr9:4823599 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_82054 0 0 1 0 2 RCL1 chr9:4823548 3'AG 4823548 Downstream 52bp
chr9 4823599 4823599 1 + G A LUSC 4823596 + 4823576 4823616 41 GGACAAAATAACGAATGGTTCTCGAATTGAAATAAACCAAA GGACAAAATAACGAATGGTTCTCAAATTGAAATAAACCAAA < 41bp 0.726376220764811 0.506530293518198 0.43807048 0.049710095 prediction 0.439691854493226 Functional Loss - RCL1 ENSG00000120158 CDS Human protein_coding chr9:4823596 chr9:4823599 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_82054 0 0 1 0 2 RCL1 chr9:4823619 5'GT 4823619 Upstream 21bp
chr5 147040937 147040937 1 - C A KIRC 147040940 - 147040920 147040960 41 GAGCTGGAGCAGCGCAAGCACACGGTGCTGGTGACAGAACT GAGCTGGAGCAGCGCAAGCACACTGTGCTGGTGACAGAACT < 41bp 0.719839468372313 0.331608744021043 0.26146734 0.17447719 prediction 0.439678936744626 Functional Loss - JAKMIP2 ENSG00000176049 CDS Human protein_coding chr5:147040940 chr5:147040937 synonymous SNV . 0 24 hm5C_associated_SNPs_82056 0 0 1 0 1 JAKMIP2 chr5:147041008 3'AG 147041008 Downstream 72bp
chrX 2990163 2990163 1 + G T LUAD 2990160 + 2990140 2990180 41 AAGCCTAATATTGTCCTAATCATGGTTGATGACCTGGGTAT AAGCCTAATATTGTCCTAATCATTGTTGATGACCTGGGTAT < 41bp 0.719839184866357 0.311168431885778 0.8154784 0.15436351 prediction 0.439678369732714 Functional Loss - ARSF ENSG00000062096 CDS Human protein_coding chrX:2990160 chrX:2990163 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_82057 0 0 0 0 2 ARSF chrX:2990067 3'AG 2990067 Downstream 97bp
chrX 2990163 2990163 1 + G T LUAD 2990160 + 2990140 2990180 41 AAGCCTAATATTGTCCTAATCATGGTTGATGACCTGGGTAT AAGCCTAATATTGTCCTAATCATTGTTGATGACCTGGGTAT < 41bp 0.719839184866357 0.311168431885778 0.8154784 0.15436351 prediction 0.439678369732714 Functional Loss - ARSF ENSG00000062096 CDS Human protein_coding chrX:2990160 chrX:2990163 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_82057 0 0 0 0 2 ARSF chrX:2990216 5'GT 2990216 Upstream 54bp
chr9 95766322 95766322 1 + G T UCEC 95766320 + 95766300 95766340 41 GACGGATGCGGGGATCCCTCCAGAAGTCATCATGGGCATAT GACGGATGCGGGGATCCCTCCATAAGTCATCATGGGCATAT < 41bp 0.719838965044247 0.359915778131682 0.14343095 0.03361681 prediction 0.439677930088493 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95766320 chr9:95766322 stopgain 0.062 0 23 hm5C_associated_SNPs_82058 0 0 0 0 2 FGD3 chr9:95766283 3'AG 95766283 Downstream 40bp
chr9 95766322 95766322 1 + G T UCEC 95766320 + 95766300 95766340 41 GACGGATGCGGGGATCCCTCCAGAAGTCATCATGGGCATAT GACGGATGCGGGGATCCCTCCATAAGTCATCATGGGCATAT < 41bp 0.719838965044247 0.359915778131682 0.14343095 0.03361681 prediction 0.439677930088493 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95766320 chr9:95766322 stopgain 0.062 0 23 hm5C_associated_SNPs_82058 0 0 0 0 2 FGD3 chr9:95766419 5'GT 95766419 Upstream 98bp
chr1 158047886 158047886 1 + C T UCEC 158047884 + 158047864 158047904 41 GCCTCTTACGAGTGCCAGGCCACGGAGGCCGCCCTGCGCTC GCCTCTTACGAGTGCCAGGCCATGGAGGCCGCCCTGCGCTC < 41bp 0.827756042991614 0.607924924793261 0.9063109 0.9042802 prediction 0.439662236396706 Functional Loss - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158047884 chr1:158047886 nonsynonymous SNV 0.972 3 23 hm5C_associated_SNPs_82067 0 0 0 0 1 KIRREL chr1:158047930 5'GT 158047930 Upstream 45bp
chr11 65688807 65688807 1 + G A UCEC 65688804 + 65688784 65688824 41 TGCCTTCTGCCCTGCAGCCCCCCGACACCCTTCCTGCCCTT TGCCTTCTGCCCTGCAGCCCCCCAACACCCTTCCTGCCCTT < 41bp 0.788317031749421 0.568493274833255 0.28530926 0.2680223 prediction 0.439647513832333 Functional Loss - DRAP1 ENSG00000175550 CDS Human protein_coding chr11:65688804 chr11:65688807 synonymous SNV . 0 24 hm5C_associated_SNPs_82072 0 0 1 0 1 DRAP1 chr11:65688801 3'AG 65688801 Downstream 7bp
chr22 31010409 31010409 1 + C T rs144652799 31010407 + 31010387 31010427 41 GCATTCTGGCCCTGTGTCTCCACCAGAAGCGGGTCCATGAC GCATTCTGGCCCTGTGTCTCCATCAGAAGCGGGTCCATGAC < 41bp 0.872457378270868 0.652634315404983 0.17841774 0.35061228 prediction 0.439646125731769 Functional Loss - TCN2 ENSG00000185339 CDS Human protein_coding chr22:31010407 chr22:31010409 synonymous SNV . 0 23 hm5C_associated_SNPs_82073 1 0 0 0 2 TCN2 chr22:31010336 3'AG 31010336 Downstream 74bp
chr22 31010409 31010409 1 + C T rs144652799 31010407 + 31010387 31010427 41 GCATTCTGGCCCTGTGTCTCCACCAGAAGCGGGTCCATGAC GCATTCTGGCCCTGTGTCTCCATCAGAAGCGGGTCCATGAC < 41bp 0.872457378270868 0.652634315404983 0.17841774 0.35061228 prediction 0.439646125731769 Functional Loss - TCN2 ENSG00000185339 CDS Human protein_coding chr22:31010407 chr22:31010409 synonymous SNV . 0 23 hm5C_associated_SNPs_82073 1 0 0 0 2 TCN2 chr22:31010488 5'GT 31010488 Upstream 80bp
chr16 56717202 56717202 1 + A C rs149181278 56717201 + 56717181 56717221 41 CCAAGTTAGAGCAGGGAACCCAGAGCTCTGCAGGCAGGGGC CCAAGTTAGAGCAGGGAACCCCGAGCTCTGCAGGCAGGGGC < 41bp 0.837275411498692 0.617454447817804 0.49444497 0.55190235 prediction 0.439641927361776 Functional Loss - MT1X ENSG00000259827 ncRNA_exonic Human protein_coding chr16:56717201 chr16:56717202 . . 0 22 hm5C_associated_SNPs_82074 0 0 0 2 2 MT1X chr16:56717142 3'AG 56717142 Downstream 61bp
chr16 56717202 56717202 1 + A C rs149181278 56717201 + 56717181 56717221 41 CCAAGTTAGAGCAGGGAACCCAGAGCTCTGCAGGCAGGGGC CCAAGTTAGAGCAGGGAACCCCGAGCTCTGCAGGCAGGGGC < 41bp 0.837275411498692 0.617454447817804 0.49444497 0.55190235 prediction 0.439641927361776 Functional Loss - MT1X ENSG00000259827 ncRNA_exonic Human processed_transcript chr16:56717201 chr16:56717202 . . 0 22 hm5C_associated_SNPs_82074 0 0 0 2 2 MT1X chr16:56717298 5'GT 56717298 Upstream 97bp
chr6 150291189 150291189 1 + G A rs115336002 150291186 + 150291166 150291206 41 GCCCCAGGCACAACCCAACCCAAGGCCATGGCCACCACCCT GCCCCAGGCACAACCCAACCCAAAGCCATGGCCACCACCCT < 41bp 0.788003611123491 0.568184623004421 0.19365147 0.09779194 prediction 0.43963797623814 Functional Loss - ULBP1 ENSG00000111981 CDS Human protein_coding chr6:150291186 chr6:150291189 synonymous SNV . 0 24 hm5C_associated_SNPs_82075 0 0 0 0 2 ULBP1 chr6:150291152 3'AG 150291152 Downstream 38bp
chr6 150291189 150291189 1 + G A rs115336002 150291186 + 150291166 150291206 41 GCCCCAGGCACAACCCAACCCAAGGCCATGGCCACCACCCT GCCCCAGGCACAACCCAACCCAAAGCCATGGCCACCACCCT < 41bp 0.788003611123491 0.568184623004421 0.19365147 0.09779194 prediction 0.43963797623814 Functional Loss - ULBP1 ENSG00000111981 CDS Human protein_coding chr6:150291186 chr6:150291189 synonymous SNV . 0 24 hm5C_associated_SNPs_82075 0 0 0 0 2 ULBP1 chr6:150291283 5'GT 150291283 Upstream 95bp
chr18 28908287 28908287 1 + G A HNSC 28908284 + 28908264 28908304 41 ATATAACATCCATAGTTGATCGAGAGGTCACTCCTTTCTTC ATATAACATCCATAGTTGATCGAAAGGTCACTCCTTTCTTC < 41bp 0.719814700549905 0.489356531700656 0.5292996 0.15179077 prediction 0.43962940109981 Functional Loss - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28908284 chr18:28908287 nonsynonymous SNV 0.981 4 24 hm5C_associated_SNPs_82077 0 0 0 0 1 DSG1 chr18:28908307 5'GT 28908307 Upstream 21bp
chr20 34501993 34501993 1 + G A SKCM 34501990 + 34501970 34502010 41 AGGAGATCAGTGACACCTCCCAGGAACCTTCTCCACCCAAG AGGAGATCAGTGACACCTCCCAGAAACCTTCTCCACCCAAG < 41bp 0.788214779086084 0.568401387648032 0.13459542 0.022581875 prediction 0.439626782876103 Functional Loss - PHF20 ENSG00000025293 CDS Human protein_coding chr20:34501990 chr20:34501993 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_82078 0 0 1 0 1 PHF20 chr20:34501955 3'AG 34501955 Downstream 39bp
chr19 16986967 16986967 1 + C T COAD 16986964 + 16986944 16986984 41 GGTGGGAACCTGTCCTCCCGCTGCGTCCGCGCTGCTAGGGA GGTGGGAACCTGTCCTCCCGCTGTGTCCGCGCTGCTAGGGA < 41bp 0.724019559682496 0.504206356082678 0.1666731 0.14250949 prediction 0.439626407199635 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16986964 chr19:16986967 synonymous SNV . 0 24 hm5C_associated_SNPs_82079 0 0 1 0 1 SIN3B chr19:16987039 5'GT 16987039 Upstream 73bp
chr11 107968468 107968468 1 + G A UCEC 107968465 + 107968445 107968485 41 GTACCCTCTTCTCAGTGAACCAGGAGTTCAGTTTAATGTAA GTACCCTCTTCTCAGTGAACCAGAAGTTCAGTTTAATGTAA < 41bp 0.741668915420449 0.52186097590759 0.88019085 0.31023628 prediction 0.439615879025718 Functional Loss - CUL5 ENSG00000166266 CDS Human protein_coding chr11:107968465 chr11:107968468 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_82081 0 0 1 0 1 CUL5 chr11:107968481 5'GT 107968481 Upstream 14bp
chr7 39610151 39610151 1 + A C HNSC 39610150 + 39610130 39610170 41 CTGGCAAAGCAGTTACTCTTCAACAGGGCTTCAATCAAGGT CTGGCAAAGCAGTTACTCTTCCACAGGGCTTCAATCAAGGT < 41bp 0.794540453670863 0.574736062948054 0.14637873 0.13858044 prediction 0.439608781445618 Functional Loss - YAE1D1 ENSG00000241127 CDS Human protein_coding chr7:39610150 chr7:39610151 nonsynonymous SNV 0.991 4 22 hm5C_associated_SNPs_82083 0 0 1 0 2 YAE1D1 chr7:39610105 3'AG 39610105 Downstream 47bp
chr7 39610151 39610151 1 + A C HNSC 39610150 + 39610130 39610170 41 CTGGCAAAGCAGTTACTCTTCAACAGGGCTTCAATCAAGGT CTGGCAAAGCAGTTACTCTTCCACAGGGCTTCAATCAAGGT < 41bp 0.794540453670863 0.574736062948054 0.14637873 0.13858044 prediction 0.439608781445618 Functional Loss - YAE1D1 ENSG00000241127 CDS Human protein_coding chr7:39610150 chr7:39610151 nonsynonymous SNV 0.991 4 22 hm5C_associated_SNPs_82083 0 0 1 0 2 YAE1D1 chr7:39610226 5'GT 39610226 Upstream 76bp
chr11 251916 251916 1 + C T LAML 251914 + 251894 251934 41 CCACATGACCTGGGTGCAGCCCCGAGTGTTGGATTTGCAAC CCACATGACCTGGGTGCAGCCCTGAGTGTTGGATTTGCAAC < 41bp 0.859622231853087 0.639822684132093 0.1180093 0.10402241 prediction 0.439599095441988 Functional Loss - PSMD13 ENSG00000185627 CDS Human protein_coding chr11:251914 chr11:251916 stopgain 0.960 1 23 hm5C_associated_SNPs_82088 0 0 1 0 2 PSMD13 chr11:251820 3'AG 251820 Downstream 97bp
chr11 251916 251916 1 + C T LAML 251914 + 251894 251934 41 CCACATGACCTGGGTGCAGCCCCGAGTGTTGGATTTGCAAC CCACATGACCTGGGTGCAGCCCTGAGTGTTGGATTTGCAAC < 41bp 0.859622231853087 0.639822684132093 0.1180093 0.10402241 prediction 0.439599095441988 Functional Loss - PSMD13 ENSG00000185627 CDS Human protein_coding chr11:251914 chr11:251916 stopgain 0.960 1 23 hm5C_associated_SNPs_82088 0 0 1 0 2 PSMD13 chr11:251936 5'GT 251936 Upstream 21bp
chr7 92027126 92027126 1 + C T UCEC 92027123 + 92027103 92027143 41 GTGTGCTGCACAGCTCTTCCCTGCGTGACTACACCCCTGCC GTGTGCTGCACAGCTCTTCCCTGTGTGACTACACCCCTGCC < 41bp 0.723872226049357 0.504073679599381 0.38866135 0.2714383 prediction 0.439597092899951 Functional Loss - ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:92027123 chr7:92027126 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_82091 0 0 1 0 2 ANKIB1 chr7:92027037 3'AG 92027037 Downstream 90bp
chr7 92027126 92027126 1 + C T UCEC 92027123 + 92027103 92027143 41 GTGTGCTGCACAGCTCTTCCCTGCGTGACTACACCCCTGCC GTGTGCTGCACAGCTCTTCCCTGTGTGACTACACCCCTGCC < 41bp 0.723872226049357 0.504073679599381 0.38866135 0.2714383 prediction 0.439597092899951 Functional Loss - ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:92027123 chr7:92027126 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_82091 0 0 1 0 2 ANKIB1 chr7:92027173 5'GT 92027173 Upstream 48bp
chr17 19458975 19458975 1 + G A SKCM 19458972 + 19458952 19458992 41 CTCCTCTTTCTCTACATCCTCGGGAAAAAACTGCATCAAGC CTCCTCTTTCTCTACATCCTCGGAAAAAAACTGCATCAAGC < 41bp 0.786315766081555 0.566522908106509 0.9204266 0.55310494 prediction 0.439585715950093 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19458972 chr17:19458975 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_82092 0 0 0 0 2 SLC47A1 chr17:19458906 3'AG 19458906 Downstream 70bp
chr17 19458975 19458975 1 + G A SKCM 19458972 + 19458952 19458992 41 CTCCTCTTTCTCTACATCCTCGGGAAAAAACTGCATCAAGC CTCCTCTTTCTCTACATCCTCGGAAAAAAACTGCATCAAGC < 41bp 0.786315766081555 0.566522908106509 0.9204266 0.55310494 prediction 0.439585715950093 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19458972 chr17:19458975 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_82092 0 0 0 0 2 SLC47A1 chr17:19459003 5'GT 19459003 Upstream 29bp
chr7 100334226 100334226 1 + G T LUAD 100334224 + 100334204 100334244 41 CCCTCTCCCACCGGCTCCACCGGGGCCCCCGGGGGGTACCC CCCTCTCCCACCGGCTCCACCGTGGCCCCCGGGGGGTACCC < 41bp 0.719786462848999 0.373469393481077 0.9401705 0.9074619 prediction 0.439572925697998 Functional Loss - ZAN ENSG00000146839 CDS Human protein_coding chr7:100334224 chr7:100334226 nonsynonymous SNV 0.004 1 23 hm5C_associated_SNPs_82097 0 0 0 0 1 ZAN chr7:100334252 5'GT 100334252 Upstream 27bp
chr7 100334227 100334227 1 + G T LUAD 100334224 + 100334204 100334244 41 CCCTCTCCCACCGGCTCCACCGGGGCCCCCGGGGGGTACCC CCCTCTCCCACCGGCTCCACCGGTGCCCCCGGGGGGTACCC < 41bp 0.719786462848999 0.346520305111281 0.9401705 0.7953005 prediction 0.439572925697998 Functional Loss - ZAN ENSG00000146839 CDS Human protein_coding chr7:100334224 chr7:100334227 synonymous SNV . 0 24 hm5C_associated_SNPs_82098 0 0 0 0 1 ZAN chr7:100334252 5'GT 100334252 Upstream 26bp
chr17 4439616 4439616 1 + T C UCEC 4439615 + 4439595 4439635 41 CGCTCTGGGAGTTCCTGAGCCTGGGCTACGCGCTCATGCTC CGCTCTGGGAGTTCCTGAGCCCGGGCTACGCGCTCATGCTC < 41bp 0.797814883110279 0.578029123609604 0.8942568 0.91191673 prediction 0.43957151900135 Functional Loss - SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4439615 chr17:4439616 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_82099 0 0 0 0 1 SPNS2 chr17:4439558 3'AG 4439558 Downstream 59bp
chr13 111371582 111371582 1 + T C UCEC 111371581 + 111371561 111371601 41 CCTTCTTGCCCCCAGAGATCCTGAAGGAGCTAGACGAGTGC CCTTCTTGCCCCCAGAGATCCCGAAGGAGCTAGACGAGTGC < 41bp 0.79459076856444 0.574815456816084 0.32524845 0.23826155 prediction 0.439550623496713 Functional Loss - ING1 ENSG00000153487 CDS Human protein_coding chr13:111371581 chr13:111371582 nonsynonymous SNV 0.747 4 22 hm5C_associated_SNPs_82108 0 0 1 0 1 ING1 chr13:111371576 3'AG 111371576 Downstream 7bp
chr12 124229290 124229290 1 + C T SKCM 124229287 + 124229267 124229307 41 AACGTGTCGGCCATGTACAGCTCCAGCCACCCACCCGCAGA AACGTGTCGGCCATGTACAGCTCTAGCCACCCACCCGCAGA < 41bp 0.723735408155377 0.503977091758057 0.76706326 0.529486 prediction 0.43951663279464 Functional Loss - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124229287 chr12:124229290 synonymous SNV . 0 24 hm5C_associated_SNPs_82113 0 0 1 0 1 ATP6V0A2 chr12:124229331 5'GT 124229331 Upstream 42bp
chr12 46242662 46242662 1 + C T LGG 46242660 + 46242640 46242680 41 AAATCCAGATTGTTCTGTTTCTCGAGCAGAAATGTATTCTG AAATCCAGATTGTTCTGTTTCTTGAGCAGAAATGTATTCTG < 41bp 0.719754830031529 0.427679499754686 0.091174245 0.14066592 prediction 0.439509660063058 Functional Loss - ARID2 ENSG00000189079 CDS Human protein_coding chr12:46242660 chr12:46242662 stopgain 1.000 1 23 hm5C_associated_SNPs_82114 0 0 1 0 2 ARID2 chr12:46242619 3'AG 46242619 Downstream 44bp
chr12 46242662 46242662 1 + C T LGG 46242660 + 46242640 46242680 41 AAATCCAGATTGTTCTGTTTCTCGAGCAGAAATGTATTCTG AAATCCAGATTGTTCTGTTTCTTGAGCAGAAATGTATTCTG < 41bp 0.719754830031529 0.427679499754686 0.091174245 0.14066592 prediction 0.439509660063058 Functional Loss - ARID2 ENSG00000189079 CDS Human protein_coding chr12:46242660 chr12:46242662 stopgain 1.000 1 23 hm5C_associated_SNPs_82114 0 0 1 0 2 ARID2 chr12:46242753 5'GT 46242753 Upstream 92bp
chr2 108869898 108869898 1 + G A SKCM 108869895 + 108869875 108869915 41 TCTATCTGGAAAGAAAACTGCAAGGTATAAAGAGGGGGCTT TCTATCTGGAAAGAAAACTGCAAAGTATAAAGAGGGGGCTT < 41bp 0.749511922833453 0.529757614200271 0.6056501 0.33531007 prediction 0.439508617266365 Functional Loss - SULT1C3 ENSG00000196228 CDS Human protein_coding chr2:108869895 chr2:108869898 synonymous SNV . 0 24 hm5C_associated_SNPs_82116 0 0 0 0 2 SULT1C3 chr2:108869801 3'AG 108869801 Downstream 98bp
chr2 108869898 108869898 1 + G A SKCM 108869895 + 108869875 108869915 41 TCTATCTGGAAAGAAAACTGCAAGGTATAAAGAGGGGGCTT TCTATCTGGAAAGAAAACTGCAAAGTATAAAGAGGGGGCTT < 41bp 0.749511922833453 0.529757614200271 0.6056501 0.33531007 prediction 0.439508617266365 Functional Loss - SULT1C3 ENSG00000196228 CDS Human protein_coding chr2:108869895 chr2:108869898 synonymous SNV . 0 24 hm5C_associated_SNPs_82116 0 0 0 0 2 SULT1C3 chr2:108869898 5'GT 108869898 Upstream 1bp
chr12 113496170 113496170 1 + G C STAD 113496166 + 113496146 113496186 41 ACGTGCTGAAGGAGGACGCTCGCGGTTCCGTGGTCCTGGGG ACGTGCTGAAGGAGGACGCTCGCGCTTCCGTGGTCCTGGGG < 41bp 0.852881808883013 0.633132390053678 0.8962202 0.71230304 prediction 0.439498837658669 Functional Loss - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113496166 chr12:113496170 nonsynonymous SNV 0.821 2 25 hm5C_associated_SNPs_82117 0 0 0 0 1 DTX1 chr12:113496256 5'GT 113496256 Upstream 87bp
chr12 2912387 2912387 1 + C T COAD 2912385 + 2912365 2912405 41 AAGGAGGAGCAGAAGAGCAACACGGCAGGGAGCCAGTCTCA AAGGAGGAGCAGAAGAGCAACATGGCAGGGAGCCAGTCTCA < 41bp 0.805229130721494 0.585484137012917 0.22279143 0.28726375 prediction 0.439489987417153 Functional Loss - FKBP4 ENSG00000004478 CDS Human protein_coding chr12:2912385 chr12:2912387 nonsynonymous SNV 0.030 1 23 hm5C_associated_SNPs_82120 0 0 1 0 1 FKBP4 chr12:2912317 3'AG 2912317 Downstream 71bp
chr6 111208777 111208777 1 + G T STAD 111208775 + 111208755 111208795 41 GTGTGACAAAAACTGACAAGCAGGAAGCTTATGTACTCAGG GTGTGACAAAAACTGACAAGCATGAAGCTTATGTACTCAGG < 41bp 0.719740324432898 0.40301657300739 0.24018103 0.05508226 prediction 0.439480648865795 Functional Loss - AMD1 ENSG00000123505 CDS Human protein_coding chr6:111208775 chr6:111208777 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_82123 0 0 1 0 2 AMD1 chr6:111208708 3'AG 111208708 Downstream 70bp
chr6 111208777 111208777 1 + G T STAD 111208775 + 111208755 111208795 41 GTGTGACAAAAACTGACAAGCAGGAAGCTTATGTACTCAGG GTGTGACAAAAACTGACAAGCATGAAGCTTATGTACTCAGG < 41bp 0.719740324432898 0.40301657300739 0.24018103 0.05508226 prediction 0.439480648865795 Functional Loss - AMD1 ENSG00000123505 CDS Human protein_coding chr6:111208775 chr6:111208777 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_82123 0 0 1 0 2 AMD1 chr6:111208794 5'GT 111208794 Upstream 18bp
chr10 38652501 38652501 1 + A T BRCA 38652497 + 38652477 38652517 41 AGATCACTGCTGATGGACTTCAGGAGGTGTTTGAGACCGAT AGATCACTGCTGATGGACTTCAGGTGGTGTTTGAGACCGAT < 41bp 0.874626686518157 0.65488974156037 0.90119344 0.89925337 prediction 0.439473889915576 Functional Loss - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38652497 chr10:38652501 . . 0 25 hm5C_associated_SNPs_82126 0 0 1 1 2 HSD17B7P2 chr10:38652424 3'AG 38652424 Downstream 78bp
chr10 38652501 38652501 1 + A T BRCA 38652497 + 38652477 38652517 41 AGATCACTGCTGATGGACTTCAGGAGGTGTTTGAGACCGAT AGATCACTGCTGATGGACTTCAGGTGGTGTTTGAGACCGAT < 41bp 0.874626686518157 0.65488974156037 0.90119344 0.89925337 prediction 0.439473889915576 Functional Loss - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38652497 chr10:38652501 . . 0 25 hm5C_associated_SNPs_82126 0 0 1 1 2 HSD17B7P2 chr10:38652538 5'GT 38652538 Upstream 38bp
chr17 79031743 79031743 1 + G C BLCA 79031742 + 79031722 79031762 41 AAGATGGGGGAGCTGGCCAGCGAGAGCCAGGGCTCCAAAGA AAGATGGGGGAGCTGGCCAGCCAGAGCCAGGGCTCCAAAGA < 41bp 0.87693248368404 0.657197840459003 0.91091913 0.81376296 prediction 0.439469286450075 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79031742 chr17:79031743 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_82128 0 0 0 0 2 BAIAP2 chr17:79031681 3'AG 79031681 Downstream 63bp
chr17 79031743 79031743 1 + G C BLCA 79031742 + 79031722 79031762 41 AAGATGGGGGAGCTGGCCAGCGAGAGCCAGGGCTCCAAAGA AAGATGGGGGAGCTGGCCAGCCAGAGCCAGGGCTCCAAAGA < 41bp 0.87693248368404 0.657197840459003 0.91091913 0.81376296 prediction 0.439469286450075 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79031742 chr17:79031743 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_82128 0 0 0 0 2 BAIAP2 chr17:79031767 5'GT 79031767 Upstream 25bp
chr14 21511158 21511158 1 + C T rs35563821 21511156 + 21511136 21511176 41 GCTCCTCCTAAGAGAGATGGCACCGGCCAGAGCAGGATTCT GCTCCTCCTAAGAGAGATGGCATCGGCCAGAGCAGGATTCT < 41bp 0.795434424833001 0.575702335509575 0.104127824 0.09344375 prediction 0.439464178646853 Functional Loss - RNASE7 ENSG00000165799 CDS Human protein_coding chr14:21511156 chr14:21511158 nonsynonymous SNV 0.013 1 23 hm5C_associated_SNPs_82130 0 0 0 0 1 RNASE7 chr14:21511112 3'AG 21511112 Downstream 47bp
chr6 10751419 10751419 1 + G A READ 10751416 + 10751396 10751436 41 TCTTCGGCAGTCTAGCCGGCCTGGGTGCTTACCAGCTGTAT TCTTCGGCAGTCTAGCCGGCCTGAGTGCTTACCAGCTGTAT < 41bp 0.772020974267411 0.552290466960346 0.8980979 0.43456742 prediction 0.43946101461413 Functional Loss - TMEM14B ENSG00000137210 CDS Human protein_coding chr6:10751416 chr6:10751419 nonsynonymous SNV 0.341 4 24 hm5C_associated_SNPs_82132 0 0 1 0 2 TMEM14B chr6:10751366 3'AG 10751366 Downstream 54bp
chr6 10751419 10751419 1 + G A READ 10751416 + 10751396 10751436 41 TCTTCGGCAGTCTAGCCGGCCTGGGTGCTTACCAGCTGTAT TCTTCGGCAGTCTAGCCGGCCTGAGTGCTTACCAGCTGTAT < 41bp 0.772020974267411 0.552290466960346 0.8980979 0.43456742 prediction 0.43946101461413 Functional Loss - TMEM14B ENSG00000137210 CDS Human protein_coding chr6:10751416 chr6:10751419 nonsynonymous SNV 0.341 4 24 hm5C_associated_SNPs_82132 0 0 1 0 2 TMEM14B chr6:10751467 5'GT 10751467 Upstream 49bp
chr9 132481637 132481637 1 + C T LUAD 132481635 + 132481615 132481655 41 TGTTCGAGCGCACGCACTACCCCGACGCCTTTGTGCGCGAG TGTTCGAGCGCACGCACTACCCTGACGCCTTTGTGCGCGAG < 41bp 0.829544132965599 0.609814863634381 0.07802069 0.03959754 prediction 0.439458538662436 Functional Loss - PRRX2 ENSG00000167157 CDS Human protein_coding chr9:132481635 chr9:132481637 synonymous SNV . 0 23 hm5C_associated_SNPs_82133 0 0 0 0 1 PRRX2 chr9:132481697 5'GT 132481697 Upstream 61bp
chr15 58830662 58830662 1 + G T COAD 58830660 + 58830640 58830680 41 TCAATCATCCGGACACGTTACAGGAGTGCGGCTTCAACTCC TCAATCATCCGGACACGTTACATGAGTGCGGCTTCAACTCC < 41bp 0.91204262180965 0.692314032346386 0.39901763 0.08494693 prediction 0.439457178926529 Functional Loss - LIPC ENSG00000166035 CDS Human protein_coding chr15:58830660 chr15:58830662 nonsynonymous SNV 0.679 3 23 hm5C_associated_SNPs_82134 0 0 0 0 1 LIPC chr15:58830716 5'GT 58830716 Upstream 55bp
chr13 114202624 114202624 1 + C T SKCM 114202621 + 114202601 114202641 41 ATGAACCGCTCTTGCAGTTTCTCCTGGCGGCGCTGGTCCTG ATGAACCGCTCTTGCAGTTTCTCTTGGCGGCGCTGGTCCTG < 41bp 0.733296476187265 0.513571218603198 0.21247348 0.06524655 prediction 0.439450515168135 Functional Loss - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114202621 chr13:114202624 synonymous SNV . 0 24 hm5C_associated_SNPs_82137 0 0 0 0 1 TMCO3 chr13:114202618 3'AG 114202618 Downstream 7bp
chr8 11839853 11839853 1 + G A COAD 11839850 + 11839830 11839870 41 ATGGCCACAAGGAGCGTCCTCTTGGCCCTCGTGGTCCTTAA ATGGCCACAAGGAGCGTCCTCTTAGCCCTCGTGGTCCTTAA < 41bp 0.769626119124873 0.549902646964635 0.13387376 0.05624315 prediction 0.439446944320478 Functional Loss - DEFB135 ENSG00000205883 CDS Human protein_coding chr8:11839850 chr8:11839853 synonymous SNV . 0 24 hm5C_associated_SNPs_82138 0 0 0 0 1 DEFB135 chr8:11839893 5'GT 11839893 Upstream 41bp
chr6 30539328 30539328 1 + A T SKCM 30539324 + 30539304 30539344 41 TGGATCGGGGACGGAGAGAGCACGAGCCCATCAGGTGAGGC TGGATCGGGGACGGAGAGAGCACGTGCCCATCAGGTGAGGC < 41bp 0.72602162591374 0.506299192349477 0.43239772 0.20419312 prediction 0.439444867128526 Functional Loss - ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30539324 chr6:30539328 nonsynonymous SNV 0.012 1 25 hm5C_associated_SNPs_82139 0 0 1 0 1 ABCF1 chr6:30539337 5'GT 30539337 Upstream 10bp
chr8 124117638 124117638 1 + T C LGG 124117637 + 124117617 124117657 41 AGTACAGCAGCCAGCAAAATCTAGGGAAAGCAAAATGCAAA AGTACAGCAGCCAGCAAAATCCAGGGAAAGCAAAATGCAAA < 41bp 0.719714226222325 0.477409107348041 0.43744475 0.8681172 prediction 0.439428452444649 Functional Loss - TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124117637 chr8:124117638 synonymous SNV . 0 22 hm5C_associated_SNPs_82143 0 0 0 0 1 TBC1D31 chr8:124117704 5'GT 124117704 Upstream 67bp
chrX 140984736 140984736 1 + G A SKCM 140984733 + 140984713 140984753 41 GTCCTCCTGAGATTCCTCCCCAGGGTCCTCCCAAGATCTCT GTCCTCCTGAGATTCCTCCCCAGAGTCCTCCCAAGATCTCT < 41bp 0.808501952497694 0.588788384978403 0.82236266 0.5831516 prediction 0.439427135038582 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140984733 chrX:140984736 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_82145 0 0 0 0 1 MAGEC3 chrX:140984668 3'AG 140984668 Downstream 69bp
chr1 209953904 209953904 1 + G C HNSC 209953900 + 209953880 209953920 41 AAGGAGAAAGACTGGGATCTCAGAGACCAGCTGCAAAAGAA AAGGAGAAAGACTGGGATCTCAGACACCAGCTGCAAAAGAA < 41bp 0.719711508662253 0.425054534132204 0.9161645 0.6851721 prediction 0.439423017324506 Functional Loss - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209953900 chr1:209953904 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_82147 0 0 0 0 2 TRAF3IP3 chr1:209953815 3'AG 209953815 Downstream 90bp
chr1 209953904 209953904 1 + G C HNSC 209953900 + 209953880 209953920 41 AAGGAGAAAGACTGGGATCTCAGAGACCAGCTGCAAAAGAA AAGGAGAAAGACTGGGATCTCAGACACCAGCTGCAAAAGAA < 41bp 0.719711508662253 0.425054534132204 0.9161645 0.6851721 prediction 0.439423017324506 Functional Loss - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209953900 chr1:209953904 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_82147 0 0 0 0 2 TRAF3IP3 chr1:209953951 5'GT 209953951 Upstream 48bp
chr11 67077245 67077245 1 + G T STAD 67077243 + 67077223 67077263 41 TGGCCTGCTTCCACAGAGCACAGGGCACCCACGTGCTGGTC TGGCCTGCTTCCACAGAGCACATGGCACCCACGTGCTGGTC < 41bp 0.719708438499729 0.349330416822827 0.84350467 0.16325417 prediction 0.439416876999457 Functional Loss - SSH3 ENSG00000172830 CDS Human protein_coding chr11:67077243 chr11:67077245 nonsynonymous SNV 0.937 3 23 hm5C_associated_SNPs_82148 0 0 0 0 1 SSH3 chr11:67077239 3'AG 67077239 Downstream 7bp
chr3 14523295 14523295 1 + C T rs139497814 14523292 + 14523272 14523312 41 CTGGCCCTTTCCTCCATGCTCTGCGTTCCCTTGGTCATCGT CTGGCCCTTTCCTCCATGCTCTGTGTTCCCTTGGTCATCGT < 41bp 0.727738890582287 0.508031146488522 0.10976687 0.076907456 prediction 0.439415488187532 Functional Loss - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14523292 chr3:14523295 synonymous SNV . 0 24 hm5C_associated_SNPs_82149 0 0 1 0 1 SLC6A6 chr3:14523349 5'GT 14523349 Upstream 55bp
chr3 45048966 45048966 1 + G A UCEC 45048963 + 45048943 45048983 41 TTCAGGAGGAGGCCTGCTCGCTGGCCAGCTTGCTGGTGTCG TTCAGGAGGAGGCCTGCTCGCTGACCAGCTTGCTGGTGTCG < 41bp 0.803663207376989 0.583957626169786 0.054126114 0.020275295 prediction 0.439411162414405 Functional Loss - EXOSC7 ENSG00000075914 CDS Human protein_coding chr3:45048963 chr3:45048966 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_82150 0 0 1 0 1 EXOSC7 chr3:45048912 3'AG 45048912 Downstream 55bp
chr9 131479161 131479161 1 + G A BRCA 131479158 + 131479138 131479178 41 TTTGTGCCTGGTGGTGACCTCATGATGCAGATCCACGAGGA TTTGTGCCTGGTGGTGACCTCATAATGCAGATCCACGAGGA < 41bp 0.799380888296827 0.579678986365875 0.29630196 0.2002793 prediction 0.439403803861903 Functional Loss - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131479158 chr9:131479161 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_82152 0 0 1 0 1 PKN3 chr9:131479202 5'GT 131479202 Upstream 42bp
chr6 72003052 72003052 1 + G A SKCM 72003049 + 72003029 72003069 41 AAGAGAAGTTTTTATGCTGCCAGGGATTTGTACAAGTACCG AAGAGAAGTTTTTATGCTGCCAGAGATTTGTACAAGTACCG < 41bp 0.77277625994107 0.553080091433732 0.78875786 0.7849326 prediction 0.439392337014676 Functional Loss - OGFRL1 ENSG00000119900 CDS Human protein_coding chr6:72003049 chr6:72003052 synonymous SNV . 0 24 hm5C_associated_SNPs_82154 0 0 1 0 1 OGFRL1 chr6:72003082 5'GT 72003082 Upstream 31bp
chr13 114174950 114174950 1 + C T STAD 114174947 + 114174927 114174967 41 ACAGGCGACATTGACTACAGCACCGTGCTCCTCGGCATGCT ACAGGCGACATTGACTACAGCACTGTGCTCCTCGGCATGCT < 41bp 0.728876758680047 0.509184795447071 0.014111489 0.021640956 prediction 0.439383926465952 Functional Loss - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114174947 chr13:114174950 synonymous SNV . 0 24 hm5C_associated_SNPs_82158 0 0 1 0 2 TMCO3 chr13:114174931 3'AG 114174931 Downstream 20bp
chr13 114174950 114174950 1 + C T STAD 114174947 + 114174927 114174967 41 ACAGGCGACATTGACTACAGCACCGTGCTCCTCGGCATGCT ACAGGCGACATTGACTACAGCACTGTGCTCCTCGGCATGCT < 41bp 0.728876758680047 0.509184795447071 0.014111489 0.021640956 prediction 0.439383926465952 Functional Loss - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114174947 chr13:114174950 synonymous SNV . 0 24 hm5C_associated_SNPs_82158 0 0 1 0 2 TMCO3 chr13:114175048 5'GT 114175048 Upstream 99bp
chr2 64069545 64069545 1 + G T ESCA 64069542 + 64069522 64069562 41 ATTTATGCTCCTGTACCCTGCTGGGTTTAGTTTTGCCTCCC ATTTATGCTCCTGTACCCTGCTGTGTTTAGTTTTGCCTCCC < 41bp 0.719690591426346 0.33128237333566 0.40620568 0.10361427 prediction 0.439381182852693 Functional Loss - UGP2 ENSG00000169764 CDS Human protein_coding chr2:64069542 chr2:64069545 nonsynonymous SNV 0.868 1 24 hm5C_associated_SNPs_82159 0 0 0 0 1 UGP2 chr2:64069571 5'GT 64069571 Upstream 27bp
chr10 708017 708017 1 + G A rs138652954 708014 + 707994 708034 41 AGCATACCGCACATCAAAGGCACGATTCTCTCCGAAGCCCT AGCATACCGCACATCAAAGGCACAATTCTCTCCGAAGCCCT < 41bp 0.793955740374383 0.574269547497773 0.13109997 0.04981637 prediction 0.43937238575322 Functional Loss - PRR26 ENSG00000180525 CDS Human protein_coding chr10:708014 chr10:708017 synonymous SNV . 0 24 hm5C_associated_SNPs_82160 0 0 0 0 2 PRR26 chr10:707966 3'AG 707966 Downstream 52bp
chr10 708017 708017 1 + G A rs138652954 708014 + 707994 708034 41 AGCATACCGCACATCAAAGGCACGATTCTCTCCGAAGCCCT AGCATACCGCACATCAAAGGCACAATTCTCTCCGAAGCCCT < 41bp 0.793955740374383 0.574269547497773 0.13109997 0.04981637 prediction 0.43937238575322 Functional Loss - PRR26 ENSG00000180525 CDS Human protein_coding chr10:708014 chr10:708017 synonymous SNV . 0 24 hm5C_associated_SNPs_82160 0 0 0 0 2 PRR26 chr10:708058 5'GT 708058 Upstream 42bp
chr7 2565136 2565136 1 + T C COAD 2565135 + 2565115 2565155 41 TACCCGCACACGCGGGACGTCTACGTCGGCAAGCCCAGCCT TACCCGCACACGCGGGACGTCCACGTCGGCAAGCCCAGCCT < 41bp 0.71968549037994 0.46085990171697 0.17004609 0.11764631 prediction 0.439370980759881 Functional Loss - LFNG ENSG00000106003 CDS Human protein_coding chr7:2565135 chr7:2565136 nonsynonymous SNV 0.631 4 22 hm5C_associated_SNPs_82161 0 0 0 0 2 LFNG chr7:2565048 3'AG 2565048 Downstream 89bp
chr7 2565136 2565136 1 + T C COAD 2565135 + 2565115 2565155 41 TACCCGCACACGCGGGACGTCTACGTCGGCAAGCCCAGCCT TACCCGCACACGCGGGACGTCCACGTCGGCAAGCCCAGCCT < 41bp 0.71968549037994 0.46085990171697 0.17004609 0.11764631 prediction 0.439370980759881 Functional Loss - LFNG ENSG00000106003 CDS Human protein_coding chr7:2565135 chr7:2565136 nonsynonymous SNV 0.631 4 22 hm5C_associated_SNPs_82161 0 0 0 0 2 LFNG chr7:2565201 5'GT 2565201 Upstream 66bp
chr6 160221774 160221774 1 + G A COAD 160221771 + 160221751 160221791 41 AGTGCTGGCGATGTTCTGCACCCGAGGACTGCTATTTTTTG AGTGCTGGCGATGTTCTGCACCCAAGGACTGCTATTTTTTG < 41bp 0.719678120515024 0.476447682089827 0.12431246 0.039109588 prediction 0.439356241030048 Functional Loss - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160221771 chr6:160221774 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_82164 0 0 1 0 2 PNLDC1 chr6:160221705 3'AG 160221705 Downstream 70bp
chr6 160221774 160221774 1 + G A COAD 160221771 + 160221751 160221791 41 AGTGCTGGCGATGTTCTGCACCCGAGGACTGCTATTTTTTG AGTGCTGGCGATGTTCTGCACCCAAGGACTGCTATTTTTTG < 41bp 0.719678120515024 0.476447682089827 0.12431246 0.039109588 prediction 0.439356241030048 Functional Loss - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160221771 chr6:160221774 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_82164 0 0 1 0 2 PNLDC1 chr6:160221861 5'GT 160221861 Upstream 88bp
chr7 138819411 138819411 1 + G A SKCM 138819408 + 138819388 138819428 41 GTTTCTTTTACAGATGCTTTCAAGGGCCAAACCTGCTGTAG GTTTCTTTTACAGATGCTTTCAAAGGCCAAACCTGCTGTAG < 41bp 0.760909232268877 0.541232905026393 0.9373052 0.89881504 prediction 0.439352654484969 Functional Loss - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138819408 chr7:138819411 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_82165 0 0 0 0 2 TTC26 chr7:138819401 3'AG 138819401 Downstream 11bp
chr7 138819411 138819411 1 + G A SKCM 138819408 + 138819388 138819428 41 GTTTCTTTTACAGATGCTTTCAAGGGCCAAACCTGCTGTAG GTTTCTTTTACAGATGCTTTCAAAGGCCAAACCTGCTGTAG < 41bp 0.760909232268877 0.541232905026393 0.9373052 0.89881504 prediction 0.439352654484969 Functional Loss - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138819408 chr7:138819411 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_82165 0 0 0 0 2 TTC26 chr7:138819467 5'GT 138819467 Upstream 57bp
chr7 127235366 127235366 1 + G A SKCM 127235363 + 127235343 127235383 41 CCCTCCTGATGCCTCCAGACCTGGGAGATCTTGGTGAGCAA CCCTCCTGATGCCTCCAGACCTGAGAGATCTTGGTGAGCAA < 41bp 0.798298913414345 0.578636818855806 0.32996172 0.0729461 prediction 0.439324189117079 Functional Loss - FSCN3 ENSG00000106328 CDS Human protein_coding chr7:127235363 chr7:127235366 stopgain 0.993 1 24 hm5C_associated_SNPs_82168 0 0 0 0 1 FSCN3 chr7:127235361 3'AG 127235361 Downstream 6bp
chr17 40845456 40845456 1 + G A STAD 40845453 + 40845433 40845473 41 CACAGGCCACTGTGCCCACCCTCGGCTCCCCTGTTTCCATG CACAGGCCACTGTGCCCACCCTCAGCTCCCCTGTTTCCATG < 41bp 0.803976390062155 0.584316097342918 0.026355654 0.015110344 prediction 0.439320585438474 Functional Loss - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40845453 chr17:40845456 nonsynonymous SNV 0.931 0 24 hm5C_associated_SNPs_82170 0 0 1 0 1 CNTNAP1 chr17:40845554 5'GT 40845554 Upstream 99bp
chr22 18975354 18975354 1 + G T LUSC 18975352 + 18975332 18975372 41 GCCATTCATGAAGAATTCCCCAGGGAGCTGGAGTCCTCCAT GCCATTCATGAAGAATTCCCCATGGAGCTGGAGTCCTCCAT < 41bp 0.719656718397771 0.364765916301985 0.93972063 0.18425503 prediction 0.439313436795542 Functional Loss - DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18975352 chr22:18975354 . . 0 23 hm5C_associated_SNPs_82173 0 0 0 0 2 DGCR5 chr22:18975270 3'AG 18975270 Downstream 85bp
chr22 18975354 18975354 1 + G T LUSC 18975352 + 18975332 18975372 41 GCCATTCATGAAGAATTCCCCAGGGAGCTGGAGTCCTCCAT GCCATTCATGAAGAATTCCCCATGGAGCTGGAGTCCTCCAT < 41bp 0.719656718397771 0.364765916301985 0.93972063 0.18425503 prediction 0.439313436795542 Functional Loss - DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18975352 chr22:18975354 . . 0 23 hm5C_associated_SNPs_82173 0 0 0 0 2 DGCR5 chr22:18975413 5'GT 18975413 Upstream 60bp
chr3 1269599 1269599 1 + G T UCEC 1269596 + 1269576 1269616 41 TCAATAGCCCCCACACAGATCAAGATATTGGCATGTACCAG TCAATAGCCCCCACACAGATCAATATATTGGCATGTACCAG < 41bp 0.71965624067544 0.332291131608417 0.35698152 0.059619278 prediction 0.43931248135088 Functional Loss - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1269596 chr3:1269599 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_82174 0 0 0 0 2 CNTN6 chr3:1269502 3'AG 1269502 Downstream 98bp
chr3 1269599 1269599 1 + G T UCEC 1269596 + 1269576 1269616 41 TCAATAGCCCCCACACAGATCAAGATATTGGCATGTACCAG TCAATAGCCCCCACACAGATCAATATATTGGCATGTACCAG < 41bp 0.71965624067544 0.332291131608417 0.35698152 0.059619278 prediction 0.43931248135088 Functional Loss - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1269596 chr3:1269599 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_82174 0 0 0 0 2 CNTN6 chr3:1269677 5'GT 1269677 Upstream 79bp
chr22 25855396 25855396 1 + T C STAD 25855395 + 25855375 25855415 41 CCCTGCAGGTGGGTTGGCTACTAGTACCCTGGCTACCGTGG CCCTGCAGGTGGGTTGGCTACCAGTACCCTGGCTACCGTGG < 41bp 0.745474287915039 0.525822483577359 0.3919472 0.3487107 prediction 0.439303608675359 Functional Loss - CRYBB2P1 ENSG00000100058 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:25855395 chr22:25855396 . . 0 22 hm5C_associated_SNPs_82175 0 0 1 0 2 CRYBB2P1 chr22:25855383 3'AG 25855383 Downstream 14bp
chr22 25855396 25855396 1 + T C STAD 25855395 + 25855375 25855415 41 CCCTGCAGGTGGGTTGGCTACTAGTACCCTGGCTACCGTGG CCCTGCAGGTGGGTTGGCTACCAGTACCCTGGCTACCGTGG < 41bp 0.745474287915039 0.525822483577359 0.3919472 0.3487107 prediction 0.439303608675359 Functional Loss - CRYBB2P1 ENSG00000100058 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:25855395 chr22:25855396 . . 0 22 hm5C_associated_SNPs_82175 0 0 1 0 2 CRYBB2P1 chr22:25855482 5'GT 25855482 Upstream 87bp
chr11 93486874 93486874 1 + G T OV 93486872 + 93486852 93486892 41 CTGTGGGAAAACTAGAATTGCAGAAGTTGGAGGTGTGCCTT CTGTGGGAAAACTAGAATTGCATAAGTTGGAGGTGTGCCTT < 41bp 0.719650746212452 0.388016971576552 0.8935944 0.867898 prediction 0.439301492424903 Functional Loss - C11orf54 ENSG00000182919 CDS Human protein_coding chr11:93486872 chr11:93486874 stopgain 1.000 1 23 hm5C_associated_SNPs_82176 0 0 1 0 2 C11orf54 chr11:93486848 3'AG 93486848 Downstream 27bp
chr11 93486874 93486874 1 + G T OV 93486872 + 93486852 93486892 41 CTGTGGGAAAACTAGAATTGCAGAAGTTGGAGGTGTGCCTT CTGTGGGAAAACTAGAATTGCATAAGTTGGAGGTGTGCCTT < 41bp 0.719650746212452 0.388016971576552 0.8935944 0.867898 prediction 0.439301492424903 Functional Loss - C11orf54 ENSG00000182919 CDS Human protein_coding chr11:93486872 chr11:93486874 stopgain 1.000 1 23 hm5C_associated_SNPs_82176 0 0 1 0 2 C11orf54 chr11:93486921 5'GT 93486921 Upstream 48bp
chr7 127229639 127229639 1 + G A BLCA 127229636 + 127229616 127229656 41 CCTCTGTGGCGGCACTACTTCCAGAACACTCAGGTGGAGTG CCTCTGTGGCGGCACTACTTCCAAAACACTCAGGTGGAGTG < 41bp 0.777847268816219 0.558196704665084 0.88731015 0.35770524 prediction 0.43930112830227 Functional Loss - ARF5 ENSG00000004059 CDS Human protein_coding chr7:127229636 chr7:127229639 synonymous SNV . 0 24 hm5C_associated_SNPs_82177 0 0 1 0 1 ARF5 chr7:127229648 5'GT 127229648 Upstream 10bp
chrX 54953058 54953058 1 + G T UCS 54953055 + 54953035 54953075 41 GCGCAAGTTGGGGCTGCGCCCTGGGTATGACTGGGCTCTCT GCGCAAGTTGGGGCTGCGCCCTGTGTATGACTGGGCTCTCT < 41bp 0.927611363568045 0.70798068845294 0.84846264 0.29583868 prediction 0.43926135023021 Functional Loss - TRO ENSG00000067445 CDS Human protein_coding chrX:54953055 chrX:54953058 nonsynonymous SNV 0.959 3 24 hm5C_associated_SNPs_82186 0 0 1 0 2 TRO chrX:54953016 3'AG 54953016 Downstream 43bp
chrX 54953058 54953058 1 + G T UCS 54953055 + 54953035 54953075 41 GCGCAAGTTGGGGCTGCGCCCTGGGTATGACTGGGCTCTCT GCGCAAGTTGGGGCTGCGCCCTGTGTATGACTGGGCTCTCT < 41bp 0.927611363568045 0.70798068845294 0.84846264 0.29583868 prediction 0.43926135023021 Functional Loss - TRO ENSG00000067445 CDS Human protein_coding chrX:54953055 chrX:54953058 nonsynonymous SNV 0.959 3 24 hm5C_associated_SNPs_82186 0 0 1 0 2 TRO chrX:54953058 5'GT 54953058 Upstream 1bp
chr1 156316639 156316639 1 + C T LUSC 156316636 + 156316616 156316656 41 AGCTTCAGACCCAGCTCGCCCAACAACAGATGGCTGTTTTG AGCTTCAGACCCAGCTCGCCCAATAACAGATGGCTGTTTTG < 41bp 0.727382865879521 0.507752946265934 0.119979054 0.054738134 prediction 0.439259839227174 Functional Loss - TSACC ENSG00000163467 CDS Human protein_coding chr1:156316636 chr1:156316639 stopgain 0.664 0 24 hm5C_associated_SNPs_82187 0 0 0 0 1 TSACC chr1:156316559 3'AG 156316559 Downstream 81bp
chr16 22587939 22587939 1 + T C STAD 22587938 + 22587918 22587958 41 TGTATTTGCTTTTAGGAGCTCTCCAGTCGTGGGGTCTTTGG TGTATTTGCTTTTAGGAGCTCCCCAGTCGTGGGGTCTTTGG < 41bp 0.742010368256154 0.522382654179081 0.94638026 0.13921931 prediction 0.439255428154145 Functional Loss - LOC653786 ENSG00000257838 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:22587938 chr16:22587939 . . 0 22 hm5C_associated_SNPs_82188 0 0 0 0 1 LOC653786 chr16:22587933 3'AG 22587933 Downstream 7bp
chr1 229438700 229438700 1 + G A UCEC 229438697 + 229438677 229438717 41 TCACCGCGGCGCGCACAGGCCCCGAACGCTCAGGAGTGTGG TCACCGCGGCGCGCACAGGCCCCAAACGCTCAGGAGTGTGG < 41bp 0.76943575848047 0.549809124180626 0.01740256 0.014369726 prediction 0.439253268599687 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229438697 chr1:229438700 synonymous SNV . 0 24 hm5C_associated_SNPs_82189 0 0 1 0 2 RAB4A chr1:229438609 3'AG 229438609 Downstream 92bp
chr1 229438700 229438700 1 + G A UCEC 229438697 + 229438677 229438717 41 TCACCGCGGCGCGCACAGGCCCCGAACGCTCAGGAGTGTGG TCACCGCGGCGCGCACAGGCCCCAAACGCTCAGGAGTGTGG < 41bp 0.76943575848047 0.549809124180626 0.01740256 0.014369726 prediction 0.439253268599687 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229438697 chr1:229438700 synonymous SNV . 0 24 hm5C_associated_SNPs_82189 0 0 1 0 2 RAB4A chr1:229438736 5'GT 229438736 Upstream 37bp
chr1 115576687 115576687 1 + G A rs190110651 115576684 + 115576664 115576704 41 TCTACAGGACTGTAGAAATACCAGGATGCCCACTCCATGTT TCTACAGGACTGTAGAAATACCAAGATGCCCACTCCATGTT < 41bp 0.756542828394526 0.536916907331061 0.12881091 0.06587049 prediction 0.43925184212693 Functional Loss - TSHB ENSG00000134200 CDS Human protein_coding chr1:115576684 chr1:115576687 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_82190 1 0 0 0 1 TSHB chr1:115576594 3'AG 115576594 Downstream 94bp
chr2 122522753 122522753 1 + G A CESC 122522750 + 122522730 122522770 41 CGTGACTGCTGGAGACTACTCCCGACCCCTCCACATCTCCA CGTGACTGCTGGAGACTACTCCCAACCCCTCCACATCTCCA < 41bp 0.771902572000777 0.552276841592091 0.03319478 0.014240861 prediction 0.439251460817372 Functional Loss - TSN ENSG00000211460 CDS Human protein_coding chr2:122522750 chr2:122522753 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_82191 0 0 1 0 1 TSN chr2:122522710 3'AG 122522710 Downstream 44bp
chr15 45047476 45047476 1 + G A SKCM 45047473 + 45047453 45047493 41 ACCTGAAACTGTTCAGTAAACCAGATGGGAAACTGATCTGC ACCTGAAACTGTTCAGTAAACCAAATGGGAAACTGATCTGC < 41bp 0.775697273115861 0.556072437305304 0.87689805 0.72002006 prediction 0.439249671621115 Functional Loss - TRIM69 ENSG00000185880 CDS Human protein_coding chr15:45047473 chr15:45047476 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_82192 0 0 0 0 1 TRIM69 chr15:45047574 5'GT 45047574 Upstream 99bp
chr6 7404698 7404698 1 + G A STAD 7404695 + 7404675 7404715 41 CCAGTTATCAGAATCCAAGGCTCGGGAGTTGTACCTGCAGG CCAGTTATCAGAATCCAAGGCTCAGGAGTTGTACCTGCAGG < 41bp 0.774344103408211 0.554728590190497 0.15904987 0.08753443 prediction 0.439231026435429 Functional Loss - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7404695 chr6:7404698 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_82193 0 0 1 0 2 RIOK1 chr6:7404651 3'AG 7404651 Downstream 48bp
chr6 7404698 7404698 1 + G A STAD 7404695 + 7404675 7404715 41 CCAGTTATCAGAATCCAAGGCTCGGGAGTTGTACCTGCAGG CCAGTTATCAGAATCCAAGGCTCAGGAGTTGTACCTGCAGG < 41bp 0.774344103408211 0.554728590190497 0.15904987 0.08753443 prediction 0.439231026435429 Functional Loss - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7404695 chr6:7404698 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_82193 0 0 1 0 2 RIOK1 chr6:7404788 5'GT 7404788 Upstream 91bp
chr2 187519428 187519428 1 + G A SKCM 187519425 + 187519405 187519445 41 GATGGCAAAGGAGTACTTCCCAGGAAACTTAGTAAGTGTTC GATGGCAAAGGAGTACTTCCCAGAAAACTTAGTAAGTGTTC < 41bp 0.719610870889746 0.498062492577155 0.7316086 0.28525493 prediction 0.439221741779492 Functional Loss - ITGAV ENSG00000138448 CDS Human protein_coding chr2:187519425 chr2:187519428 synonymous SNV . 0 24 hm5C_associated_SNPs_82195 0 0 1 0 2 ITGAV chr2:187519377 3'AG 187519377 Downstream 52bp
chr2 187519428 187519428 1 + G A SKCM 187519425 + 187519405 187519445 41 GATGGCAAAGGAGTACTTCCCAGGAAACTTAGTAAGTGTTC GATGGCAAAGGAGTACTTCCCAGAAAACTTAGTAAGTGTTC < 41bp 0.719610870889746 0.498062492577155 0.7316086 0.28525493 prediction 0.439221741779492 Functional Loss - ITGAV ENSG00000138448 CDS Human protein_coding chr2:187519425 chr2:187519428 synonymous SNV . 0 24 hm5C_associated_SNPs_82195 0 0 1 0 2 ITGAV chr2:187519435 5'GT 187519435 Upstream 8bp
chrX 152101461 152101461 1 + C T COAD 152101459 + 152101439 152101479 41 GGCAATGTGGGATCCGGAGCCACGGGCTCCCGGCCTGAAGG GGCAATGTGGGATCCGGAGCCATGGGCTCCCGGCCTGAAGG < 41bp 0.821551279873169 0.601945292868007 0.8989725 0.8943958 prediction 0.439211974010324 Functional Loss - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152101459 chrX:152101461 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_82197 0 0 0 0 2 ZNF185 chrX:152101417 3'AG 152101417 Downstream 45bp
chrX 152101461 152101461 1 + C T COAD 152101459 + 152101439 152101479 41 GGCAATGTGGGATCCGGAGCCACGGGCTCCCGGCCTGAAGG GGCAATGTGGGATCCGGAGCCATGGGCTCCCGGCCTGAAGG < 41bp 0.821551279873169 0.601945292868007 0.8989725 0.8943958 prediction 0.439211974010324 Functional Loss - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152101459 chrX:152101461 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_82197 0 0 0 0 2 ZNF185 chrX:152101515 5'GT 152101515 Upstream 55bp
chr7 143079757 143079757 1 + G A OV 143079754 + 143079734 143079774 41 TCACTGCTGGATGACATGACCAAGAATGATCCTTTCAAAGC TCACTGCTGGATGACATGACCAAAAATGATCCTTTCAAAGC < 41bp 0.756882127170486 0.537277816279818 0.62355155 0.4701725 prediction 0.439208621781336 Functional Loss - ZYX ENSG00000159840 CDS Human protein_coding chr7:143079754 chr7:143079757 synonymous SNV . 0 24 hm5C_associated_SNPs_82198 0 0 0 0 2 ZYX chr7:143079686 3'AG 143079686 Downstream 72bp
chr7 143079757 143079757 1 + G A OV 143079754 + 143079734 143079774 41 TCACTGCTGGATGACATGACCAAGAATGATCCTTTCAAAGC TCACTGCTGGATGACATGACCAAAAATGATCCTTTCAAAGC < 41bp 0.756882127170486 0.537277816279818 0.62355155 0.4701725 prediction 0.439208621781336 Functional Loss - ZYX ENSG00000159840 CDS Human protein_coding chr7:143079754 chr7:143079757 synonymous SNV . 0 24 hm5C_associated_SNPs_82198 0 0 0 0 2 ZYX chr7:143079778 5'GT 143079778 Upstream 22bp
chr2 74682696 74682696 1 + G T SARC 74682693 + 74682673 74682713 41 CCTCAGCTCAAACTCAAAATCAAGCTTGGGGGACAAGTCCT CCTCAGCTCAAACTCAAAATCAATCTTGGGGGACAAGTCCT < 41bp 0.719600576367127 0.321544333947067 0.14938796 0.03837198 prediction 0.439201152734254 Functional Loss - INO80B ENSG00000115274 CDS Human protein_coding chr2:74682693 chr2:74682696 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_82200 0 0 1 0 1 INO80B chr2:74682725 5'GT 74682725 Upstream 30bp
chr7 131128433 131128433 1 + G A UCEC 131128430 + 131128410 131128450 41 TGGGCCTGAGGACATCCAGTCTCGAATAGGACACTGCATGT TGGGCCTGAGGACATCCAGTCTCAAATAGGACACTGCATGT < 41bp 0.726476410379701 0.506875994827701 0.7189522 0.14396298 prediction 0.439200831104001 Functional Loss - MKLN1 ENSG00000128585 CDS Human protein_coding chr7:131128430 chr7:131128433 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_82201 0 0 1 0 1 MKLN1 chr7:131128461 5'GT 131128461 Upstream 29bp
chr19 11094881 11094881 1 + G A rs529632222 11094878 + 11094858 11094898 41 ACTCCTCGGCCAGGTCCTTCCCCGGGCCCTGGCCCTTCCCC ACTCCTCGGCCAGGTCCTTCCCCAGGCCCTGGCCCTTCCCC < 41bp 0.766892185977927 0.547301117212452 0.9220497 0.8605392 prediction 0.439182137530951 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11094878 chr19:11094881 synonymous SNV . 0 24 hm5C_associated_SNPs_82204 1 0 1 0 1 SMARCA4 chr19:11094797 3'AG 11094797 Downstream 85bp
chr9 133928244 133928244 1 + G A HNSC 133928241 + 133928221 133928261 41 CCGCTTCTCTCGCCAGCCTGCAGGAGACCTCCGAGGACGTG CCGCTTCTCTCGCCAGCCTGCAGAAGACCTCCGAGGACGTG < 41bp 0.71958926820603 0.476508935827852 0.9324496 0.8541236 prediction 0.43917853641206 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133928241 chr9:133928244 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_82205 0 0 0 0 1 LAMC3 chr9:133928237 3'AG 133928237 Downstream 8bp
chr19 50360963 50360963 1 + G A COAD 50360960 + 50360940 50360980 41 CTTCCAACAGGCAGTGGGACCTGGTGGTGTCAACTCAGGCC CTTCCAACAGGCAGTGGGACCTGATGGTGTCAACTCAGGCC < 41bp 0.719588856631355 0.471062391055157 0.31032678 0.17817333 prediction 0.439177713262709 Functional Loss - PTOV1 ENSG00000104960 CDS Human protein_coding chr19:50360960 chr19:50360963 nonsynonymous SNV 0.615 2 24 hm5C_associated_SNPs_82206 0 0 1 0 2 PTOV1 chr19:50360950 3'AG 50360950 Downstream 14bp
chr19 50360963 50360963 1 + G A COAD 50360960 + 50360940 50360980 41 CTTCCAACAGGCAGTGGGACCTGGTGGTGTCAACTCAGGCC CTTCCAACAGGCAGTGGGACCTGATGGTGTCAACTCAGGCC < 41bp 0.719588856631355 0.471062391055157 0.31032678 0.17817333 prediction 0.439177713262709 Functional Loss - PTOV1 ENSG00000104960 CDS Human protein_coding chr19:50360960 chr19:50360963 nonsynonymous SNV 0.615 2 24 hm5C_associated_SNPs_82206 0 0 1 0 2 PTOV1 chr19:50361039 5'GT 50361039 Upstream 77bp
chr4 25673327 25673327 1 + G A SKCM 25673324 + 25673304 25673344 41 ACCATGAAGAATGTGACCTACAAGGAGAACATCGCCAAATG ACCATGAAGAATGTGACCTACAAAGAGAACATCGCCAAATG < 41bp 0.719588121087883 0.487809973401704 0.2912153 0.06406972 prediction 0.439176242175767 Functional Loss - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25673324 chr4:25673327 synonymous SNV . 0 24 hm5C_associated_SNPs_82207 0 0 0 0 1 SLC34A2 chr4:25673343 5'GT 25673343 Upstream 17bp
chr3 53736702 53736702 1 + C T LUAD 53736700 + 53736680 53736720 41 GGAAAGAGAGAAGGCAAAAGCACGGGGAGATTTCCAGAAGC GGAAAGAGAGAAGGCAAAAGCATGGGGAGATTTCCAGAAGC < 41bp 0.81013793305928 0.590553004958018 0.90676665 0.8994695 prediction 0.439169856202523 Functional Loss - CACNA1D ENSG00000157388 CDS Human protein_coding chr3:53736700 chr3:53736702 nonsynonymous SNV 0.788 5 23 hm5C_associated_SNPs_82209 0 0 0 0 1 CACNA1D chr3:53736668 3'AG 53736668 Downstream 35bp
chr1 10479708 10479708 1 + G C LUSC 10479704 + 10479684 10479724 41 TAGGCTCAGCGGGATTACTTCGGGGCTCACACCTATGAACT TAGGCTCAGCGGGATTACTTCGGGCCTCACACCTATGAACT < 41bp 0.860162319417461 0.640578178066535 0.9490836 0.93960464 prediction 0.439168282701851 Functional Loss - PGD ENSG00000142657 CDS Human protein_coding chr1:10479704 chr1:10479708 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_82210 0 0 1 0 1 PGD chr1:10479687 3'AG 10479687 Downstream 22bp
chr17 36633909 36633909 1 + C T SARC 36633907 + 36633887 36633927 41 TGAGCAAGGAGCGGCGGGAGCCCGGGCCGGCGGCGGCGGGG TGAGCAAGGAGCGGCGGGAGCCTGGGCCGGCGGCGGCGGGG < 41bp 0.782715947983849 0.563143630467715 0.90045965 0.91017425 prediction 0.439144635032266 Functional Loss - ARHGAP23 ENSG00000225485 CDS Human other chr17:36633907 chr17:36633909 synonymous SNV . 0 23 hm5C_associated_SNPs_82214 0 0 0 0 1 ARHGAP23 chr17:36633820 3'AG 36633820 Downstream 90bp
chr6 168307864 168307864 1 + T C OV 168307863 + 168307843 168307883 41 CCATGTAGAGCACCACTAGGCTGGACAGCGACAGAGTGTCG CCATGTAGAGCACCACTAGGCCGGACAGCGACAGAGTGTCG < 41bp 0.719568738833904 0.478014318200704 0.07543415 0.09019703 prediction 0.439137477667808 Functional Loss - AFDN ENSG00000130396 CDS Human protein_coding chr6:168307863 chr6:168307864 nonsynonymous SNV 0.142 0 22 hm5C_associated_SNPs_82215 0 0 1 0 1 AFDN chr6:168307851 3'AG 168307851 Downstream 14bp
chr6 155109058 155109058 1 + C T UCEC 155109055 + 155109035 155109075 41 ACTCCATTGTGCGACAATCCCGACATCAGTTTGGTCAAGAA ACTCCATTGTGCGACAATCCCGATATCAGTTTGGTCAAGAA < 41bp 0.754182802532988 0.534618199212489 0.19013327 0.23322496 prediction 0.439129206640996 Functional Loss - SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155109055 chr6:155109058 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_82217 0 0 1 0 1 SCAF8 chr6:155109156 5'GT 155109156 Upstream 99bp
chr16 67681598 67681598 1 + G T GBM 67681596 + 67681576 67681616 41 CCCCAAGGCATGACTGCACTCAGCAGACACCTCGAGCGTTG CCCCAAGGCATGACTGCACTCATCAGACACCTCGAGCGTTG < 41bp 0.898216997824144 0.678653028345624 0.5678794 0.23493332 prediction 0.439127938957041 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67681596 chr16:67681598 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_82218 0 0 0 0 2 CARMIL2 chr16:67681583 3'AG 67681583 Downstream 16bp
chr16 67681598 67681598 1 + G T GBM 67681596 + 67681576 67681616 41 CCCCAAGGCATGACTGCACTCAGCAGACACCTCGAGCGTTG CCCCAAGGCATGACTGCACTCATCAGACACCTCGAGCGTTG < 41bp 0.898216997824144 0.678653028345624 0.5678794 0.23493332 prediction 0.439127938957041 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67681596 chr16:67681598 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_82218 0 0 0 0 2 CARMIL2 chr16:67681669 5'GT 67681669 Upstream 72bp
chr5 176295848 176295848 1 + C T UCEC 176295846 + 176295826 176295866 41 GGACCCCAATGTATACATCACGCGGGAGCACAGCCTGGTGG GGACCCCAATGTATACATCACGTGGGAGCACAGCCTGGTGG < 41bp 0.825433552827082 0.605874031942293 0.455435 0.49072713 prediction 0.439119041769578 Functional Loss - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176295846 chr5:176295848 nonsynonymous SNV 0.992 2 23 hm5C_associated_SNPs_82219 0 0 0 0 1 UNC5A chr5:176295785 3'AG 176295785 Downstream 64bp
chr2 24286001 24286001 1 + C T SKCM 24285999 + 24285979 24286019 41 GCATATGGAGCCACGGGCCACCCCGGTGTCATCCCTCCCAA GCATATGGAGCCACGGGCCACCTCGGTGTCATCCCTCCCAA < 41bp 0.815051881536407 0.595492969683132 0.09387618 0.090608954 prediction 0.439117823706551 Functional Loss - FKBP1B ENSG00000119782 CDS Human protein_coding chr2:24285999 chr2:24286001 nonsynonymous SNV 0.953 2 23 hm5C_associated_SNPs_82220 0 0 1 1 1 FKBP1B chr2:24285934 3'AG 24285934 Downstream 68bp
chr3 20164252 20164252 1 + G C rs553434368 20164248 + 20164228 20164268 41 ATTCCGATGGAATTAATCAACGAGGTTATGTCTACCATCAC ATTCCGATGGAATTAATCAACGAGCTTATGTCTACCATCAC < 41bp 0.856269317317964 0.636711275547225 0.86490244 0.47142655 prediction 0.439116083541479 Functional Loss - KAT2B ENSG00000114166 CDS Human protein_coding chr3:20164248 chr3:20164252 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_82222 0 0 1 0 2 KAT2B chr3:20164160 3'AG 20164160 Downstream 93bp
chr3 20164252 20164252 1 + G C rs553434368 20164248 + 20164228 20164268 41 ATTCCGATGGAATTAATCAACGAGGTTATGTCTACCATCAC ATTCCGATGGAATTAATCAACGAGCTTATGTCTACCATCAC < 41bp 0.856269317317964 0.636711275547225 0.86490244 0.47142655 prediction 0.439116083541479 Functional Loss - KAT2B ENSG00000114166 CDS Human protein_coding chr3:20164248 chr3:20164252 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_82222 0 0 1 0 2 KAT2B chr3:20164296 5'GT 20164296 Upstream 45bp
chr6 57189026 57189026 1 + C T COAD 57189024 + 57189004 57189044 41 CTTAGAAGATGAATATGAACCACGAAGAAGAGATCATATTT CTTAGAAGATGAATATGAACCATGAAGAAGAGATCATATTT < 41bp 0.719557650345068 0.449882831561315 0.033824623 0.04613045 prediction 0.439115300690135 Functional Loss - PRIM2 ENSG00000146143 CDS Human protein_coding chr6:57189024 chr6:57189026 stopgain 0.993 0 23 hm5C_associated_SNPs_82223 0 0 1 0 2 PRIM2 chr6:57188999 3'AG 57188999 Downstream 28bp
chr6 57189026 57189026 1 + C T COAD 57189024 + 57189004 57189044 41 CTTAGAAGATGAATATGAACCACGAAGAAGAGATCATATTT CTTAGAAGATGAATATGAACCATGAAGAAGAGATCATATTT < 41bp 0.719557650345068 0.449882831561315 0.033824623 0.04613045 prediction 0.439115300690135 Functional Loss - PRIM2 ENSG00000146143 CDS Human protein_coding chr6:57189024 chr6:57189026 stopgain 0.993 0 23 hm5C_associated_SNPs_82223 0 0 1 0 2 PRIM2 chr6:57189078 5'GT 57189078 Upstream 53bp
chr10 90695108 90695108 1 - C T BLCA 90695111 - 90695091 90695131 41 ACTGACAGATCATTGCCCCTCCGGAGCGCAAATACTCTGTC ACTGACAGATCATTGCCCCTCCGAAGCGCAAATACTCTGTC < 41bp 0.765584351497405 0.546029743005487 0.20391226 0.1667215 prediction 0.439109216983837 Functional Loss - ACTA2 ENSG00000107796 CDS Human protein_coding chr10:90695111 chr10:90695108 nonsynonymous SNV 0.978 2 24 hm5C_associated_SNPs_82226 0 0 0 0 1 ACTA2 chr10:90695123 3'AG 90695123 Downstream 16bp
chrX 79278736 79278736 1 + G A UCEC 79278733 + 79278713 79278753 41 TGAGATGATCATTACTAAAGCGGGCAGGTTCGGTTCTGCCC TGAGATGATCATTACTAAAGCGGACAGGTTCGGTTCTGCCC < 41bp 0.719553672600839 0.467352181930171 0.34399244 0.12087703 prediction 0.439107345201678 Functional Loss - TBX22;TBX22 ENSG00000122145;ENSG00000122145 exonic;splicing Human protein_coding chrX:79278733 chrX:79278736 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_82227 0 0 0 0 1 TBX22 chrX:79278739 5'GT 79278739 Upstream 4bp
chr5 147763543 147763543 1 + G T rs560479371 147763541 + 147763521 147763561 41 AGTGCCTCAGCGGTAGGGGCCGGGGAAGTGTCTGTAGCGTC AGTGCCTCAGCGGTAGGGGCCGTGGAAGTGTCTGTAGCGTC < 41bp 0.911382833299673 0.691830225763006 0.81696695 0.26969302 prediction 0.439105215073335 Functional Loss - FBXO38 ENSG00000145868 UTR5 Human protein_coding chr5:147763541 chr5:147763543 . . 0 23 hm5C_associated_SNPs_82229 0 0 0 0 1 FBXO38 chr5:147763602 5'GT 147763602 Upstream 60bp
chr14 100374010 100374010 1 + C T COAD 100374007 + 100373987 100374027 41 AATCTCTGTGCTGTGGATGACTCCAACGACCATGTGCTCTC AATCTCTGTGCTGTGGATGACTCTAACGACCATGTGCTCTC < 41bp 0.719550977647427 0.475542670894914 0.9612525 0.92739093 prediction 0.439101955294853 Functional Loss - EML1 ENSG00000066629 CDS Human protein_coding chr14:100374007 chr14:100374010 synonymous SNV . 0 24 hm5C_associated_SNPs_82230 0 0 1 0 2 EML1 chr14:100373975 3'AG 100373975 Downstream 36bp
chr14 100374010 100374010 1 + C T COAD 100374007 + 100373987 100374027 41 AATCTCTGTGCTGTGGATGACTCCAACGACCATGTGCTCTC AATCTCTGTGCTGTGGATGACTCTAACGACCATGTGCTCTC < 41bp 0.719550977647427 0.475542670894914 0.9612525 0.92739093 prediction 0.439101955294853 Functional Loss - EML1 ENSG00000066629 CDS Human protein_coding chr14:100374007 chr14:100374010 synonymous SNV . 0 24 hm5C_associated_SNPs_82230 0 0 1 0 2 EML1 chr14:100374070 5'GT 100374070 Upstream 61bp
chr10 1569038 1569038 1 + A T PAAD 1569034 + 1569014 1569054 41 CACTTGGTGCGTGGAGGGGTCGTGAGCGGGCACAGGCAGCC CACTTGGTGCGTGGAGGGGTCGTGTGCGGGCACAGGCAGCC < 41bp 0.719547199000568 0.467796349380411 0.70183635 0.40139568 prediction 0.439094398001135 Functional Loss - ADARB2-AS1 ENSG00000205696 ncRNA_exonic Human antisense chr10:1569034 chr10:1569038 . . 0 25 hm5C_associated_SNPs_82233 0 0 0 0 1 ADARB2-AS1 chr10:1569094 5'GT 1569094 Upstream 57bp
chr6 159086571 159086571 1 + C T UCEC 159086569 + 159086549 159086589 41 CCGTGTGCCGGGGCTGCAGCCACCGCGTGTGTGCCCAGTGC CCGTGTGCCGGGGCTGCAGCCATCGCGTGTGTGCCCAGTGC < 41bp 0.841434988362588 0.621895376119368 0.606932 0.37960586 prediction 0.439079224486439 Functional Loss - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159086569 chr6:159086571 synonymous SNV . 0 23 hm5C_associated_SNPs_82237 0 0 0 0 1 SYTL3 chr6:159086645 5'GT 159086645 Upstream 75bp
chr19 8321506 8321506 1 + T C UCEC 8321505 + 8321485 8321525 41 GTCCTGTCCTGCTGCAGACTCTGAAGCCATCCCTGTACTGG GTCCTGTCCTGCTGCAGACTCCGAAGCCATCCCTGTACTGG < 41bp 0.782539068560953 0.562999778986047 0.358845 0.61343634 prediction 0.439078579149812 Functional Loss - CERS4 ENSG00000090661 CDS Human protein_coding chr19:8321505 chr19:8321506 nonsynonymous SNV 0.164 3 22 hm5C_associated_SNPs_82238 0 0 1 0 2 CERS4 chr19:8321502 3'AG 8321502 Downstream 5bp
chr19 8321506 8321506 1 + T C UCEC 8321505 + 8321485 8321525 41 GTCCTGTCCTGCTGCAGACTCTGAAGCCATCCCTGTACTGG GTCCTGTCCTGCTGCAGACTCCGAAGCCATCCCTGTACTGG < 41bp 0.782539068560953 0.562999778986047 0.358845 0.61343634 prediction 0.439078579149812 Functional Loss - CERS4 ENSG00000090661 CDS Human protein_coding chr19:8321505 chr19:8321506 nonsynonymous SNV 0.164 3 22 hm5C_associated_SNPs_82238 0 0 1 0 2 CERS4 chr19:8321594 5'GT 8321594 Upstream 89bp
chr19 16131429 16131429 1 + G A SKCM 16131426 + 16131406 16131446 41 AGCTGCCACCCATCAGTGCCCTGGAAGTGAAGGTAAGAGCC AGCTGCCACCCATCAGTGCCCTGAAAGTGAAGGTAAGAGCC < 41bp 0.747873717558026 0.528335208050413 0.16612509 0.11818841 prediction 0.439077019015226 Functional Loss - LINC00661 ENSG00000205396 ncRNA_exonic Human processed_transcript chr19:16131426 chr19:16131429 . . 0 24 hm5C_associated_SNPs_82240 0 0 0 0 2 LINC00661 chr19:16131398 3'AG 16131398 Downstream 32bp
chr19 16131429 16131429 1 + G A SKCM 16131426 + 16131406 16131446 41 AGCTGCCACCCATCAGTGCCCTGGAAGTGAAGGTAAGAGCC AGCTGCCACCCATCAGTGCCCTGAAAGTGAAGGTAAGAGCC < 41bp 0.747873717558026 0.528335208050413 0.16612509 0.11818841 prediction 0.439077019015226 Functional Loss - LINC00661 ENSG00000205396 ncRNA_exonic Human processed_transcript chr19:16131426 chr19:16131429 . . 0 24 hm5C_associated_SNPs_82240 0 0 0 0 2 LINC00661 chr19:16131437 5'GT 16131437 Upstream 9bp
chr22 19423197 19423197 1 + T C UCEC 19423196 + 19423176 19423216 41 GGAGCTCACCTTTGAGGAGACTGAGAGGAGAGCTCTGCTTC GGAGCTCACCTTTGAGGAGACCGAGAGGAGAGCTCTGCTTC < 41bp 0.765527991615535 0.545990235653619 0.46978167 0.36851013 prediction 0.439075511923832 Functional Loss - MRPL40 ENSG00000185608 CDS Human protein_coding chr22:19423196 chr22:19423197 synonymous SNV . 0 22 hm5C_associated_SNPs_82241 0 0 1 0 1 MRPL40 chr22:19423161 3'AG 19423161 Downstream 37bp
chr15 40509785 40509785 1 + G T ESCA 40509782 + 40509762 40509802 41 GTGTTGACCTTAGGGTGCAGCTGGATGTTTTTACCCTCAGC GTGTTGACCTTAGGGTGCAGCTGTATGTTTTTACCCTCAGC < 41bp 0.719536589116685 0.33079013996431 0.52844197 0.25607544 prediction 0.439073178233369 Functional Loss - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40509782 chr15:40509785 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_82242 0 0 1 0 2 BUB1B chr15:40509697 3'AG 40509697 Downstream 89bp
chr15 40509785 40509785 1 + G T ESCA 40509782 + 40509762 40509802 41 GTGTTGACCTTAGGGTGCAGCTGGATGTTTTTACCCTCAGC GTGTTGACCTTAGGGTGCAGCTGTATGTTTTTACCCTCAGC < 41bp 0.719536589116685 0.33079013996431 0.52844197 0.25607544 prediction 0.439073178233369 Functional Loss - BUB1B ENSG00000156970 CDS Human other chr15:40509782 chr15:40509785 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_82242 0 0 1 0 2 BUB1B chr15:40509868 5'GT 40509868 Upstream 84bp
chr20 58349367 58349367 1 + C T BLCA 58349364 + 58349344 58349384 41 GTCCGTCTGTCGAGAACGTCCAGCGTGGAGCGGGGCAAGGA GTCCGTCTGTCGAGAACGTCCAGTGTGGAGCGGGGCAAGGA < 41bp 0.738395819763763 0.518859293409301 0.088688076 0.041623563 prediction 0.439073052708924 Functional Loss - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58349364 chr20:58349367 synonymous SNV . 0 24 hm5C_associated_SNPs_82243 0 0 0 0 1 PHACTR3 chr20:58349298 3'AG 58349298 Downstream 70bp
chr11 63967459 63967459 1 + C T rs146903932 63967457 + 63967437 63967477 41 AGCGGCTGGCCTACATAAACCCCGACCTGGCTTTGGAGGAG AGCGGCTGGCCTACATAAACCCTGACCTGGCTTTGGAGGAG < 41bp 0.719534858082111 0.42644641959898 0.015686393 0.015252084 prediction 0.439069716164221 Functional Loss - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63967457 chr11:63967459 synonymous SNV . 0 23 hm5C_associated_SNPs_82245 0 0 1 0 2 STIP1 chr11:63967412 3'AG 63967412 Downstream 48bp
chr11 63967459 63967459 1 + C T rs146903932 63967457 + 63967437 63967477 41 AGCGGCTGGCCTACATAAACCCCGACCTGGCTTTGGAGGAG AGCGGCTGGCCTACATAAACCCTGACCTGGCTTTGGAGGAG < 41bp 0.719534858082111 0.42644641959898 0.015686393 0.015252084 prediction 0.439069716164221 Functional Loss - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63967457 chr11:63967459 synonymous SNV . 0 23 hm5C_associated_SNPs_82245 0 0 1 0 2 STIP1 chr11:63967508 5'GT 63967508 Upstream 50bp
chr2 3691065 3691065 1 + G A rs34351135 3691062 + 3691042 3691082 41 TGTGAGTGCAGCCAGCTGCGCAAGGCCATCGGGGAGATGGA TGTGAGTGCAGCCAGCTGCGCAAAGCCATCGGGGAGATGGA < 41bp 0.787703562855758 0.568169636348903 0.85793936 0.39407098 prediction 0.439067853013711 Functional Loss - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3691062 chr2:3691065 synonymous SNV . 0 24 hm5C_associated_SNPs_82247 0 0 0 0 2 COLEC11 chr2:3691034 3'AG 3691034 Downstream 32bp
chr2 3691065 3691065 1 + G A rs34351135 3691062 + 3691042 3691082 41 TGTGAGTGCAGCCAGCTGCGCAAGGCCATCGGGGAGATGGA TGTGAGTGCAGCCAGCTGCGCAAAGCCATCGGGGAGATGGA < 41bp 0.787703562855758 0.568169636348903 0.85793936 0.39407098 prediction 0.439067853013711 Functional Loss - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3691062 chr2:3691065 synonymous SNV . 0 24 hm5C_associated_SNPs_82247 0 0 0 0 2 COLEC11 chr2:3691129 5'GT 3691129 Upstream 65bp
chr4 146403189 146403189 1 + C T rs553959864 146403187 + 146403167 146403207 41 ACGGACGGGCGCGCCGCCAACCCGGTAAAACGAAACAGACC ACGGACGGGCGCGCCGCCAACCTGGTAAAACGAAACAGACC < 41bp 0.780188028515038 0.560661728944501 0.86111003 0.60245603 prediction 0.439052599141075 Functional Loss - SMAD1 ENSG00000170365 UTR5 Human protein_coding chr4:146403187 chr4:146403189 . . 0 23 hm5C_associated_SNPs_82253 0 0 0 0 1 SMAD1 chr4:146403190 5'GT 146403190 Upstream 2bp
chr7 130025110 130025110 1 + C T SKCM 130025108 + 130025088 130025128 41 GGGAACATCAAGGCCTTCATCTCCATCCACAGCTACTCCCA GGGAACATCAAGGCCTTCATCTTCATCCACAGCTACTCCCA < 41bp 0.876297411961085 0.656784179792899 0.9466311 0.17063591 prediction 0.439026464336371 Functional Loss - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130025108 chr7:130025110 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_82262 0 0 0 0 1 CPA1 chr7:130025186 5'GT 130025186 Upstream 77bp
chr9 17793414 17793414 1 + C T UCEC 17793412 + 17793392 17793432 41 AAGGGAATATCAACCTAAACCACGAATGAGCCTGGAGTTTC AAGGGAATATCAACCTAAACCATGAATGAGCCTGGAGTTTC < 41bp 0.870059605013681 0.650546705126528 0.0059832335 0.014750868 prediction 0.439025799774306 Functional Loss - SH3GL2 ENSG00000107295 CDS Human protein_coding chr9:17793412 chr9:17793414 stopgain 0.999 0 23 hm5C_associated_SNPs_82263 0 0 0 0 2 SH3GL2 chr9:17793365 3'AG 17793365 Downstream 50bp
chr9 17793414 17793414 1 + C T UCEC 17793412 + 17793392 17793432 41 AAGGGAATATCAACCTAAACCACGAATGAGCCTGGAGTTTC AAGGGAATATCAACCTAAACCATGAATGAGCCTGGAGTTTC < 41bp 0.870059605013681 0.650546705126528 0.0059832335 0.014750868 prediction 0.439025799774306 Functional Loss - SH3GL2 ENSG00000107295 CDS Human protein_coding chr9:17793412 chr9:17793414 stopgain 0.999 0 23 hm5C_associated_SNPs_82263 0 0 0 0 2 SH3GL2 chr9:17793495 5'GT 17793495 Upstream 82bp
chr1 120846114 120846114 1 + C T UCEC 120846112 + 120846092 120846132 41 TATGATATTAACAGACTAGACTCCACAGGTAAGAAACAATT TATGATATTAACAGACTAGACTTCACAGGTAAGAAACAATT < 41bp 0.719510130799497 0.425051255787706 0.93068343 0.14172074 prediction 0.439020261598994 Functional Loss - FAM72B ENSG00000188610 CDS Human protein_coding chr1:120846112 chr1:120846114 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_82264 0 0 0 0 1 FAM72B chr1:120846119 5'GT 120846119 Upstream 6bp
chr3 133476701 133476701 1 + G T UCEC 133476699 + 133476679 133476719 41 CTGTTTAAGGACTCTGCCCACGGGTTTTTAAAAGTCCCCCC CTGTTTAAGGACTCTGCCCACGTGTTTTTAAAAGTCCCCCC < 41bp 0.719510066968904 0.359892815871333 0.6695167 0.15419647 prediction 0.439020133937808 Functional Loss - TF ENSG00000091513 CDS Human protein_coding chr3:133476699 chr3:133476701 nonsynonymous SNV 0.043 3 23 hm5C_associated_SNPs_82265 0 0 1 0 2 TF chr3:133476613 3'AG 133476613 Downstream 89bp
chr3 133476701 133476701 1 + G T UCEC 133476699 + 133476679 133476719 41 CTGTTTAAGGACTCTGCCCACGGGTTTTTAAAAGTCCCCCC CTGTTTAAGGACTCTGCCCACGTGTTTTTAAAAGTCCCCCC < 41bp 0.719510066968904 0.359892815871333 0.6695167 0.15419647 prediction 0.439020133937808 Functional Loss - TF ENSG00000091513 CDS Human protein_coding chr3:133476699 chr3:133476701 nonsynonymous SNV 0.043 3 23 hm5C_associated_SNPs_82265 0 0 1 0 2 TF chr3:133476790 5'GT 133476790 Upstream 90bp
chr19 1531836 1531836 1 + G T rs184257515 1531834 + 1531814 1531854 41 TTTGGCTACCAGCTCTTGGACGGGGGGCGCACGGGACGGCA TTTGGCTACCAGCTCTTGGACGTGGGGCGCACGGGACGGCA < 41bp 0.914791812870116 0.695282735981389 0.92513543 0.8348441 prediction 0.439018153777455 Functional Loss - PLK5 ENSG00000185988 CDS Human protein_coding chr19:1531834 chr19:1531836 nonsynonymous SNV 0.090 2 23 hm5C_associated_SNPs_82266 0 0 0 0 1 PLK5 chr19:1531737 3'AG 1531737 Downstream 100bp
chr7 99912241 99912241 1 + G A BRCA 99912238 + 99912218 99912258 41 TGGATGAATCTGATGATGAGCCAGAGAAGGAGCTCGCCCCT TGGATGAATCTGATGATGAGCCAAAGAAGGAGCTCGCCCCT < 41bp 0.792719207042668 0.573211305549304 0.65207314 0.113028616 prediction 0.439015802986727 Functional Loss - SPDYE3 ENSG00000214300 CDS Human protein_coding chr7:99912238 chr7:99912241 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_82267 0 0 0 0 1 SPDYE3 chr7:99912155 3'AG 99912155 Downstream 87bp
chr1 3672048 3672048 1 + G A rs146403079 3672045 + 3672025 3672065 41 ACCCACTGAGGCCGATTTGTCCGGAGAGATTGACAACAGCT ACCCACTGAGGCCGATTTGTCCGAAGAGATTGACAACAGCT < 41bp 0.781881071175539 0.562377624463992 0.4046011 0.034643263 prediction 0.439006893423096 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3672045 chr1:3672048 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_82269 0 0 0 0 2 CCDC27 chr1:3672021 3'AG 3672021 Downstream 28bp
chr1 3672048 3672048 1 + G A rs146403079 3672045 + 3672025 3672065 41 ACCCACTGAGGCCGATTTGTCCGGAGAGATTGACAACAGCT ACCCACTGAGGCCGATTTGTCCGAAGAGATTGACAACAGCT < 41bp 0.781881071175539 0.562377624463992 0.4046011 0.034643263 prediction 0.439006893423096 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3672045 chr1:3672048 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_82269 0 0 0 0 2 CCDC27 chr1:3672131 5'GT 3672131 Upstream 84bp
chr1 160313209 160313209 1 + C T LUSC 160313207 + 160313187 160313227 41 ATGGCTACGGCAGGGGGTGGCTCTGGGGCTGACCCGGGAAG ATGGCTACGGCAGGGGGTGGCTTTGGGGCTGACCCGGGAAG < 41bp 0.719501923936232 0.499611078572311 0.884115 0.8333539 prediction 0.439003847872465 Functional Loss - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160313207 chr1:160313209 nonsynonymous SNV 0.993 1 23 hm5C_associated_SNPs_82272 0 0 1 0 1 NCSTN chr1:160313271 5'GT 160313271 Upstream 63bp
chrX 152915526 152915526 1 + G T LGG 152915524 + 152915504 152915544 41 TCACTGTGGCCTACCTCATGCAGAAGCTCCACCTCTCTCTC TCACTGTGGCCTACCTCATGCATAAGCTCCACCTCTCTCTC < 41bp 0.719501352396524 0.370658789084463 0.36639482 0.018156022 prediction 0.439002704793047 Functional Loss - DUSP9 ENSG00000130829 CDS Human protein_coding chrX:152915524 chrX:152915526 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_82274 0 0 1 0 1 DUSP9 chrX:152915435 3'AG 152915435 Downstream 92bp
chr16 46952560 46952560 1 + G A SKCM 46952557 + 46952537 46952577 41 ACCAGGACAACGTGTACTCTCCAGATTGCAGATTCCACTCC ACCAGGACAACGTGTACTCTCCAAATTGCAGATTCCACTCC < 41bp 0.814925525348737 0.595434339853845 0.72882843 0.28270647 prediction 0.438982370989785 Functional Loss - GPT2 ENSG00000166123 CDS Human protein_coding chr16:46952557 chr16:46952560 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_82280 0 0 1 0 1 GPT2 chr16:46952533 3'AG 46952533 Downstream 28bp
chrX 150911612 150911612 1 + G A SKCM 150911609 + 150911589 150911629 41 TCAAAGATACCAAGAAACTGCGAGACAACTACATCCACACC TCAAAGATACCAAGAAACTGCGAAACAACTACATCCACACC < 41bp 0.775723343591935 0.556240344708408 0.36634207 0.14341077 prediction 0.438965997767055 Functional Loss - CNGA2 ENSG00000183862 CDS Human protein_coding chrX:150911609 chrX:150911612 nonsynonymous SNV 0.987 2 24 hm5C_associated_SNPs_82283 0 0 0 0 1 CNGA2 chrX:150911565 3'AG 150911565 Downstream 48bp
chr15 67649703 67649703 1 + G A UCEC 67649700 + 67649680 67649720 41 CAGCCACTTTCACTATACCTCGGGAACCACCTCCATCTCCA CAGCCACTTTCACTATACCTCGGAAACCACCTCCATCTCCA < 41bp 0.780781304175072 0.561302662990873 0.73455876 0.20703337 prediction 0.438957282368397 Functional Loss - IQCH ENSG00000103599 CDS Human protein_coding chr15:67649700 chr15:67649703 nonsynonymous SNV 0.021 0 24 hm5C_associated_SNPs_82285 0 0 0 0 2 IQCH chr15:67649683 3'AG 67649683 Downstream 21bp
chr15 67649703 67649703 1 + G A UCEC 67649700 + 67649680 67649720 41 CAGCCACTTTCACTATACCTCGGGAACCACCTCCATCTCCA CAGCCACTTTCACTATACCTCGGAAACCACCTCCATCTCCA < 41bp 0.780781304175072 0.561302662990873 0.73455876 0.20703337 prediction 0.438957282368397 Functional Loss - IQCH ENSG00000103599 CDS Human protein_coding chr15:67649700 chr15:67649703 nonsynonymous SNV 0.021 0 24 hm5C_associated_SNPs_82285 0 0 0 0 2 IQCH chr15:67649759 5'GT 67649759 Upstream 57bp
chr3 9970025 9970025 1 + G A UCEC 9970022 + 9970002 9970042 41 CCAGAACCTCTGGCAAGCCGCCCGACTGCAACTGCTGACCC CCAGAACCTCTGGCAAGCCGCCCAACTGCAACTGCTGACCC < 41bp 0.719476864575263 0.487258313792109 0.26972872 0.4776956 prediction 0.438953729150526 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9970022 chr3:9970025 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_82289 0 0 1 0 1 IL17RC chr3:9969989 3'AG 9969989 Downstream 37bp
chr10 88718556 88718556 1 + G A SKCM 88718553 + 88718533 88718573 41 ACGGAAGCAGCTGAGAAGACCAAGGAGGGGGTCATGTATGT ACGGAAGCAGCTGAGAAGACCAAAGAGGGGGTCATGTATGT < 41bp 0.779214437872935 0.559739349967283 0.7447512 0.32949436 prediction 0.438950175811304 Functional Loss - SNCG ENSG00000173267 CDS Human protein_coding chr10:88718553 chr10:88718556 synonymous SNV . 0 24 hm5C_associated_SNPs_82290 0 0 1 0 1 SNCG chr10:88718575 5'GT 88718575 Upstream 20bp
chr8 42176890 42176890 1 + C T rs56105162 42176887 + 42176867 42176907 41 AAGTTGGATTTCTTCAAAACCAGCATCCAGATTGACCTGGA AAGTTGGATTTCTTCAAAACCAGTATCCAGATTGACCTGGA < 41bp 0.732379037550362 0.512910610104669 0.15075293 0.07234874 prediction 0.438936854891387 Functional Loss - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42176887 chr8:42176890 synonymous SNV . 0 24 hm5C_associated_SNPs_82294 0 0 1 0 1 IKBKB chr8:42176939 5'GT 42176939 Upstream 50bp
chr17 7490231 7490231 1 + G A rs137983973 7490228 + 7490208 7490248 41 CACCCCTAGGTGTCGCTTTCCTCGCTTGCTACGGCCTGGTC CACCCCTAGGTGTCGCTTTCCTCACTTGCTACGGCCTGGTC < 41bp 0.719466455020818 0.473259096313159 0.50713915 0.14910805 prediction 0.438932910041637 Functional Loss - MPDU1 ENSG00000129255 CDS Human protein_coding chr17:7490228 chr17:7490231 nonsynonymous SNV 0.980 1 24 hm5C_associated_SNPs_82295 0 0 1 0 1 MPDU1 chr17:7490217 3'AG 7490217 Downstream 15bp
chr2 242154224 242154224 1 + C T rs139066448 242154222 + 242154202 242154242 41 TGAGCCCTGCTGCCGTAGTGCGCGGCTGGAGGCTGCCTGAT TGAGCCCTGCTGCCGTAGTGCGTGGCTGGAGGCTGCCTGAT < 41bp 0.820519878219504 0.601054218780592 0.86093307 0.70095915 prediction 0.438931318877826 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242154222 chr2:242154224 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_82296 0 0 0 0 2 ANO7 chr2:242154220 3'AG 242154220 Downstream 5bp
chr2 242154224 242154224 1 + C T rs139066448 242154222 + 242154202 242154242 41 TGAGCCCTGCTGCCGTAGTGCGCGGCTGGAGGCTGCCTGAT TGAGCCCTGCTGCCGTAGTGCGTGGCTGGAGGCTGCCTGAT < 41bp 0.820519878219504 0.601054218780592 0.86093307 0.70095915 prediction 0.438931318877826 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242154222 chr2:242154224 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_82296 0 0 0 0 2 ANO7 chr2:242154317 5'GT 242154317 Upstream 94bp
chr8 37986389 37986389 1 + G A UCEC 37986386 + 37986366 37986406 41 ACTACTCTTCTGGCTATGGACAGGGAGACGTCCTGGGATTT ACTACTCTTCTGGCTATGGACAGAGAGACGTCCTGGGATTT < 41bp 0.775231509518247 0.555767954893301 0.9321141 0.6651802 prediction 0.438927109249893 Functional Loss - ASH2L ENSG00000129691 CDS Human protein_coding chr8:37986386 chr8:37986389 nonsynonymous SNV 0.395 4 24 hm5C_associated_SNPs_82297 0 0 1 0 1 ASH2L chr8:37986469 5'GT 37986469 Upstream 81bp
chr9 131262354 131262354 1 + C T rs542069980 131262352 + 131262332 131262372 41 TTTCTCCTCGTTAGGCGGACCGCCGCTACCAGAGCCGGCTG TTTCTCCTCGTTAGGCGGACCGTCGCTACCAGAGCCGGCTG < 41bp 0.719463108638996 0.470534992446938 0.058049917 0.041498393 prediction 0.438926217277991 Functional Loss - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131262352 chr9:131262354 synonymous SNV . 0 23 hm5C_associated_SNPs_82298 0 0 1 0 1 ODF2 chr9:131262346 3'AG 131262346 Downstream 9bp
chr4 70802862 70802862 1 + G T ACC 70802860 + 70802840 70802880 41 ATACTAGGAATGAGTCTACTCAGGTGAGACCCTTTGTTTTA ATACTAGGAATGAGTCTACTCATGTGAGACCCTTTGTTTTA < 41bp 0.719459317626652 0.403379501825855 0.9066938 0.29062417 prediction 0.438918635253304 Functional Loss - CSN1S1 ENSG00000126545 CDS Human protein_coding chr4:70802860 chr4:70802862 nonsynonymous SNV 0.005 1 23 hm5C_associated_SNPs_82302 0 0 0 0 2 CSN1S1 chr4:70802839 3'AG 70802839 Downstream 24bp
chr4 70802862 70802862 1 + G T ACC 70802860 + 70802840 70802880 41 ATACTAGGAATGAGTCTACTCAGGTGAGACCCTTTGTTTTA ATACTAGGAATGAGTCTACTCATGTGAGACCCTTTGTTTTA < 41bp 0.719459317626652 0.403379501825855 0.9066938 0.29062417 prediction 0.438918635253304 Functional Loss - CSN1S1 ENSG00000126545 CDS Human protein_coding chr4:70802860 chr4:70802862 nonsynonymous SNV 0.005 1 23 hm5C_associated_SNPs_82302 0 0 0 0 2 CSN1S1 chr4:70802862 5'GT 70802862 Upstream 1bp
chr1 205568274 205568274 1 + G A rs146674823 205568271 + 205568251 205568291 41 TTTGGCAGATATTCCAGGCTCAGGGCAGCTATAGTTTCCTG TTTGGCAGATATTCCAGGCTCAGAGCAGCTATAGTTTCCTG < 41bp 0.786742177225792 0.567284945926077 0.60518086 0.46350467 prediction 0.438914462599429 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205568271 chr1:205568274 nonsynonymous SNV 0.990 5 24 hm5C_associated_SNPs_82304 0 0 0 5 1 MFSD4A chr1:205568259 3'AG 205568259 Downstream 16bp
chr11 105623777 105623777 1 + G A LUSC 105623774 + 105623754 105623794 41 GATAAGAGGTCGGTACATACCTTGACCTCATTCTGCAGCGC GATAAGAGGTCGGTACATACCTTAACCTCATTCTGCAGCGC < 41bp 0.719450594292019 0.496429045694418 0.051922023 0.08256656 prediction 0.438901188584037 Functional Loss - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105623774 chr11:105623777 synonymous SNV . 0 24 hm5C_associated_SNPs_82309 0 0 0 0 1 GRIA4 chr11:105623707 3'AG 105623707 Downstream 71bp
chr22 46663952 46663952 1 + C T rs533037119 46663950 + 46663930 46663970 41 GCGCAACATGGCCGCAGCCTCGCCTCTGCGCGACTGCCAGG GCGCAACATGGCCGCAGCCTCGTCTCTGCGCGACTGCCAGG < 41bp 0.744328303477561 0.524878068897583 0.13529679 0.14911196 prediction 0.438900469159957 Functional Loss - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46663950 chr22:46663952 nonsynonymous SNV 0.009 0 23 hm5C_associated_SNPs_82310 0 0 1 0 1 TTC38 chr22:46663969 5'GT 46663969 Upstream 18bp
chr1 159796723 159796723 1 + G T STAD 159796721 + 159796701 159796741 41 CCCCTGTGGAGTCTGCTTCTCTGGGAAGGTAAGTGGGGCAG CCCCTGTGGAGTCTGCTTCTCTTGGAAGGTAAGTGGGGCAG < 41bp 0.905222464095655 0.685776160888985 0.74988633 0.17428982 prediction 0.43889260641334 Functional Loss - SLAMF8 ENSG00000158714 CDS Human protein_coding chr1:159796721 chr1:159796723 nonsynonymous SNV 0.984 0 23 hm5C_associated_SNPs_82312 0 0 0 0 1 SLAMF8 chr1:159796728 5'GT 159796728 Upstream 6bp
chr17 7467090 7467090 1 + C T COAD 7467088 + 7467068 7467108 41 ACTCAGGTGGACTCCAAAGTCTCCTCTGGACCCTGACTCGG ACTCAGGTGGACTCCAAAGTCTTCTCTGGACCCTGACTCGG < 41bp 0.719441427631842 0.460378389854836 0.15659165 0.21301386 prediction 0.438882855263683 Functional Loss - SENP3 ENSG00000161956 CDS Human protein_coding chr17:7467088 chr17:7467090 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_82314 0 0 1 0 1 SENP3 chr17:7467108 5'GT 7467108 Upstream 19bp
chr1 43787145 43787145 1 + G A READ 43787142 + 43787122 43787162 41 GGGCTACCGCATGGAGCAGCCTCGAAACTGTGACGATGAAG GGGCTACCGCATGGAGCAGCCTCAAAACTGTGACGATGAAG < 41bp 0.750716201712799 0.531275769605622 0.87610435 0.15596554 prediction 0.438880864214354 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43787142 chr1:43787145 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_82315 0 0 0 0 1 TIE1 chr1:43787067 3'AG 43787067 Downstream 79bp
chr9 96407975 96407975 1 + G A CESC 96407972 + 96407952 96407992 41 CGCTGGGCTACATGGAGGAGCACGGCTTCACCGAGCCCATC CGCTGGGCTACATGGAGGAGCACAGCTTCACCGAGCCCATC < 41bp 0.719430592862629 0.464371434021941 0.3647884 0.1419118 prediction 0.438861185725257 Functional Loss - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96407972 chr9:96407975 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_82319 0 0 1 0 2 PHF2 chr9:96407911 3'AG 96407911 Downstream 65bp
chr9 96407975 96407975 1 + G A CESC 96407972 + 96407952 96407992 41 CGCTGGGCTACATGGAGGAGCACGGCTTCACCGAGCCCATC CGCTGGGCTACATGGAGGAGCACAGCTTCACCGAGCCCATC < 41bp 0.719430592862629 0.464371434021941 0.3647884 0.1419118 prediction 0.438861185725257 Functional Loss - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96407972 chr9:96407975 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_82319 0 0 1 0 2 PHF2 chr9:96408071 5'GT 96408071 Upstream 97bp
chr8 21959726 21959726 1 + G A rs113817175 21959723 + 21959703 21959743 41 GCAGGTGACCTCGGTCCTGTCCCGGCTTGCCCTCTTCCCCC GCAGGTGACCTCGGTCCTGTCCCAGCTTGCCCTCTTCCCCC < 41bp 0.719426136769458 0.462267400679072 0.4212627 0.22441429 prediction 0.438852273538916 Functional Loss - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21959723 chr8:21959726 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_82324 0 0 1 0 1 FAM160B2 chr8:21959686 3'AG 21959686 Downstream 41bp
chr8 22442859 22442859 1 + G A SKCM 22442856 + 22442836 22442876 41 TCCAGAGTCTGGCATGTTCCCCGGGCCTCCCCGCTGCTGAC TCCAGAGTCTGGCATGTTCCCCGAGCCTCCCCGCTGCTGAC < 41bp 0.719423611478285 0.457245659890187 0.9305098 0.5981852 prediction 0.43884722295657 Functional Loss - PDLIM2 ENSG00000120913 CDS Human protein_coding chr8:22442856 chr8:22442859 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_82326 0 0 1 0 2 PDLIM2 chr8:22442834 3'AG 22442834 Downstream 26bp
chr8 22442859 22442859 1 + G A SKCM 22442856 + 22442836 22442876 41 TCCAGAGTCTGGCATGTTCCCCGGGCCTCCCCGCTGCTGAC TCCAGAGTCTGGCATGTTCCCCGAGCCTCCCCGCTGCTGAC < 41bp 0.719423611478285 0.457245659890187 0.9305098 0.5981852 prediction 0.43884722295657 Functional Loss - PDLIM2 ENSG00000120913 CDS Human protein_coding chr8:22442856 chr8:22442859 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_82326 0 0 1 0 2 PDLIM2 chr8:22442912 5'GT 22442912 Upstream 54bp
chrX 110980098 110980098 1 + G A CESC 110980095 + 110980075 110980115 41 TCTTTGTATCTCCACCTACACACGGCAGGCCAGGTAGGTTA TCTTTGTATCTCCACCTACACACAGCAGGCCAGGTAGGTTA < 41bp 0.719420497080597 0.496389782082007 0.028667301 0.0044761 prediction 0.438840994161193 Functional Loss - ALG13 ENSG00000101901 CDS Human protein_coding chrX:110980095 chrX:110980098 nonsynonymous SNV 0.690 2 24 hm5C_associated_SNPs_82328 0 0 1 0 1 ALG13 chrX:110980107 5'GT 110980107 Upstream 10bp
chr12 69127245 69127245 1 + C T rs34342902 69127243 + 69127223 69127263 41 TTTTCACAGCATCAAAAAAGCACGAAGCTGCAAAAGAAGTA TTTTCACAGCATCAAAAAAGCATGAAGCTGCAAAAGAAGTA < 41bp 0.719419251286134 0.43121854451545 0.15956089 0.17527685 prediction 0.438838502572268 Functional Loss - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69127243 chr12:69127245 synonymous SNV . 0 23 hm5C_associated_SNPs_82329 0 0 1 0 1 NUP107 chr12:69127232 3'AG 69127232 Downstream 14bp
chr14 24113644 24113644 1 + G A UCEC 24113641 + 24113621 24113661 41 CTGGGTGTCTACAATGTCAGCAAGACAGCGCTGCTGGGTCT CTGGGTGTCTACAATGTCAGCAAAACAGCGCTGCTGGGTCT < 41bp 0.787124522161487 0.567716820338253 0.882585 0.78745306 prediction 0.438815403646468 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113641 chr14:24113644 synonymous SNV . 0 24 hm5C_associated_SNPs_82333 0 0 1 2 1 DHRS2 chr14:24113618 3'AG 24113618 Downstream 27bp
chr11 134182311 134182311 1 + C T rs201221004 134182308 + 134182288 134182328 41 AACAATGGGAGCGGCCAGTCCTACGGGCTTGTCCTGTATGA AACAATGGGAGCGGCCAGTCCTATGGGCTTGTCCTGTATGA < 41bp 0.719402526498509 0.487948498719396 0.09782702 0.08342564 prediction 0.438805052997018 Functional Loss - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134182308 chr11:134182311 synonymous SNV . 0 24 hm5C_associated_SNPs_82336 0 0 0 0 2 GLB1L3 chr11:134182243 3'AG 134182243 Downstream 69bp
chr11 134182311 134182311 1 + C T rs201221004 134182308 + 134182288 134182328 41 AACAATGGGAGCGGCCAGTCCTACGGGCTTGTCCTGTATGA AACAATGGGAGCGGCCAGTCCTATGGGCTTGTCCTGTATGA < 41bp 0.719402526498509 0.487948498719396 0.09782702 0.08342564 prediction 0.438805052997018 Functional Loss - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134182308 chr11:134182311 synonymous SNV . 0 24 hm5C_associated_SNPs_82336 0 0 0 0 2 GLB1L3 chr11:134182383 5'GT 134182383 Upstream 73bp
chr3 184571699 184571699 1 + G T UCEC 184571696 + 184571676 184571716 41 AGATGTCTGTTCAGTGGTTCCAAGGGTGAAGTCTGCTGTAT AGATGTCTGTTCAGTGGTTCCAATGGTGAAGTCTGCTGTAT < 41bp 0.71940044519272 0.341003333855551 0.901312 0.6182695 prediction 0.438800890385439 Functional Loss - VPS8 ENSG00000156931 CDS Human protein_coding chr3:184571696 chr3:184571699 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_82337 0 0 1 0 2 VPS8 chr3:184571645 3'AG 184571645 Downstream 55bp
chr3 184571699 184571699 1 + G T UCEC 184571696 + 184571676 184571716 41 AGATGTCTGTTCAGTGGTTCCAAGGGTGAAGTCTGCTGTAT AGATGTCTGTTCAGTGGTTCCAATGGTGAAGTCTGCTGTAT < 41bp 0.71940044519272 0.341003333855551 0.901312 0.6182695 prediction 0.438800890385439 Functional Loss - VPS8 ENSG00000156931 CDS Human protein_coding chr3:184571696 chr3:184571699 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_82337 0 0 1 0 2 VPS8 chr3:184571798 5'GT 184571798 Upstream 100bp
chr6 36990039 36990039 1 + C T SKCM 36990036 + 36990016 36990056 41 TGCAGTCTGAGGAGCTGGGCCTCCGGGCACCGCAGTGGGTC TGCAGTCTGAGGAGCTGGGCCTCTGGGCACCGCAGTGGGTC < 41bp 0.719399676860839 0.491479315780616 0.25281125 0.3267393 prediction 0.438799353721678 Functional Loss - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36990036 chr6:36990039 nonsynonymous SNV 0.965 3 24 hm5C_associated_SNPs_82339 0 0 0 0 1 FGD2 chr6:36990015 3'AG 36990015 Downstream 25bp
chr6 36990038 36990038 1 + C T SKCM 36990036 + 36990016 36990056 41 TGCAGTCTGAGGAGCTGGGCCTCCGGGCACCGCAGTGGGTC TGCAGTCTGAGGAGCTGGGCCTTCGGGCACCGCAGTGGGTC < 41bp 0.719399676860839 0.431534552480237 0.25281125 0.22704902 prediction 0.438799353721678 Functional Loss - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36990036 chr6:36990038 synonymous SNV . 0 23 hm5C_associated_SNPs_82340 0 0 0 0 1 FGD2 chr6:36990015 3'AG 36990015 Downstream 24bp
chr22 18069942 18069942 1 + C T SKCM 18069939 + 18069919 18069959 41 TCGGCCTCAGCACCCTCCACCTCCAGGTCCTACACAACTGG TCGGCCTCAGCACCCTCCACCTCTAGGTCCTACACAACTGG < 41bp 0.733436404986427 0.514037042569917 0.9608531 0.9375793 prediction 0.438798724833021 Functional Loss - SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18069939 chr22:18069942 synonymous SNV . 0 24 hm5C_associated_SNPs_82341 0 0 0 0 1 SLC25A18 chr22:18069902 3'AG 18069902 Downstream 41bp
chr2 1161290 1161290 1 + G A rs61744694 1161287 + 1161267 1161307 41 ACCATCACCGTTGAGTATCTCAGGGAAGCGCCGGCATTTCT ACCATCACCGTTGAGTATCTCAGAGAAGCGCCGGCATTTCT < 41bp 0.719398744118257 0.486224120750501 0.93027276 0.89482784 prediction 0.438797488236513 Functional Loss - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1161287 chr2:1161290 synonymous SNV . 0 24 hm5C_associated_SNPs_82342 0 0 0 0 2 SNTG2 chr2:1161234 3'AG 1161234 Downstream 57bp
chr2 1161290 1161290 1 + G A rs61744694 1161287 + 1161267 1161307 41 ACCATCACCGTTGAGTATCTCAGGGAAGCGCCGGCATTTCT ACCATCACCGTTGAGTATCTCAGAGAAGCGCCGGCATTTCT < 41bp 0.719398744118257 0.486224120750501 0.93027276 0.89482784 prediction 0.438797488236513 Functional Loss - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1161287 chr2:1161290 synonymous SNV . 0 24 hm5C_associated_SNPs_82342 0 0 0 0 2 SNTG2 chr2:1161321 5'GT 1161321 Upstream 32bp
chr12 661326 661326 1 + A T BRCA 661322 + 661302 661342 41 ACCAGGAAAACGCCTACTACCAAGACCGGTGAGAGACACTG ACCAGGAAAACGCCTACTACCAAGTCCGGTGAGAGACACTG < 41bp 0.719395911239678 0.385805878695712 0.20153075 0.09559807 prediction 0.438791822479357 Functional Loss - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:661322 chr12:661326 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_82343 0 0 0 0 2 B4GALNT3 chr12:661229 3'AG 661229 Downstream 98bp
chr12 661326 661326 1 + A T BRCA 661322 + 661302 661342 41 ACCAGGAAAACGCCTACTACCAAGACCGGTGAGAGACACTG ACCAGGAAAACGCCTACTACCAAGTCCGGTGAGAGACACTG < 41bp 0.719395911239678 0.385805878695712 0.20153075 0.09559807 prediction 0.438791822479357 Functional Loss - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:661322 chr12:661326 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_82343 0 0 0 0 2 B4GALNT3 chr12:661329 5'GT 661329 Upstream 4bp
chr6 109294631 109294631 1 + G T UCEC 109294629 + 109294609 109294649 41 TCACAAACTCCATTGGGAAACAGAATTCAAACCTGTGGCAC TCACAAACTCCATTGGGAAACATAATTCAAACCTGTGGCAC < 41bp 0.719395252570093 0.41036958895706 0.39999926 0.21938813 prediction 0.438790505140186 Functional Loss - ARMC2 ENSG00000118690 CDS Human protein_coding chr6:109294629 chr6:109294631 stopgain 0.999 1 23 hm5C_associated_SNPs_82344 0 0 0 0 1 ARMC2 chr6:109294560 3'AG 109294560 Downstream 72bp
chr16 4744977 4744977 1 + G A SKCM 4744974 + 4744954 4744994 41 CGCAGGTGCTGGGCCTCGTGCGGGTCCCGCTGTACACCCAG CGCAGGTGCTGGGCCTCGTGCGGATCCCGCTGTACACCCAG < 41bp 0.811625464060982 0.592230859592259 0.88574654 0.77485174 prediction 0.438789208937445 Functional Loss - NUDT16L1 ENSG00000168101 CDS Human protein_coding chr16:4744974 chr16:4744977 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_82345 0 0 1 0 1 NUDT16L1 chr16:4744959 3'AG 4744959 Downstream 19bp
chr19 34984483 34984483 1 + C T COAD 34984480 + 34984460 34984500 41 TGCCTGGACGGGGTTCCCTTCACCGTGGACGTGGAGAACAA TGCCTGGACGGGGTTCCCTTCACTGTGGACGTGGAGAACAA < 41bp 0.72286498321325 0.503472543214449 0.09940785 0.04150173 prediction 0.438784879997604 Functional Loss - WTIP ENSG00000142279 CDS Human protein_coding chr19:34984480 chr19:34984483 synonymous SNV . 0 24 hm5C_associated_SNPs_82347 0 0 1 0 2 WTIP chr19:34984397 3'AG 34984397 Downstream 87bp
chr19 34984483 34984483 1 + C T COAD 34984480 + 34984460 34984500 41 TGCCTGGACGGGGTTCCCTTCACCGTGGACGTGGAGAACAA TGCCTGGACGGGGTTCCCTTCACTGTGGACGTGGAGAACAA < 41bp 0.72286498321325 0.503472543214449 0.09940785 0.04150173 prediction 0.438784879997604 Functional Loss - WTIP ENSG00000142279 CDS Human protein_coding chr19:34984480 chr19:34984483 synonymous SNV . 0 24 hm5C_associated_SNPs_82347 0 0 1 0 2 WTIP chr19:34984527 5'GT 34984527 Upstream 45bp
chr9 37719128 37719128 1 + G A LUAD 37719125 + 37719105 37719145 41 GCCAGACTGAAGACCAACCCCGTGAAGGTGCACTTTGCTGA GCCAGACTGAAGACCAACCCCGTAAAGGTGCACTTTGCTGA < 41bp 0.719389167608109 0.477030370375212 0.24041358 0.16822562 prediction 0.438778335216218 Functional Loss - FRMPD1 ENSG00000070601 CDS Human protein_coding chr9:37719125 chr9:37719128 synonymous SNV . 0 24 hm5C_associated_SNPs_82349 0 0 0 0 2 FRMPD1 chr9:37719066 3'AG 37719066 Downstream 63bp
chr9 37719128 37719128 1 + G A LUAD 37719125 + 37719105 37719145 41 GCCAGACTGAAGACCAACCCCGTGAAGGTGCACTTTGCTGA GCCAGACTGAAGACCAACCCCGTAAAGGTGCACTTTGCTGA < 41bp 0.719389167608109 0.477030370375212 0.24041358 0.16822562 prediction 0.438778335216218 Functional Loss - FRMPD1 ENSG00000070601 CDS Human protein_coding chr9:37719125 chr9:37719128 synonymous SNV . 0 24 hm5C_associated_SNPs_82349 0 0 0 0 2 FRMPD1 chr9:37719173 5'GT 37719173 Upstream 46bp
chr12 72290500 72290500 1 + T C LUAD 72290499 + 72290479 72290519 41 AGCAAGCATGGAAATTTCTTCTGGGTTATTTTCCCTGGGAC AGCAAGCATGGAAATTTCTTCCGGGTTATTTTCCCTGGGAC < 41bp 0.794649827854949 0.575262561360777 0.88371706 0.8888577 prediction 0.438774532988344 Functional Loss - TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72290499 chr12:72290500 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_82352 0 0 1 0 2 TBC1D15 chr12:72290457 3'AG 72290457 Downstream 44bp
chr12 72290500 72290500 1 + T C LUAD 72290499 + 72290479 72290519 41 AGCAAGCATGGAAATTTCTTCTGGGTTATTTTCCCTGGGAC AGCAAGCATGGAAATTTCTTCCGGGTTATTTTCCCTGGGAC < 41bp 0.794649827854949 0.575262561360777 0.88371706 0.8888577 prediction 0.438774532988344 Functional Loss - TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72290499 chr12:72290500 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_82352 0 0 1 0 2 TBC1D15 chr12:72290560 5'GT 72290560 Upstream 61bp
chr22 23488845 23488845 1 + C T UCEC 23488843 + 23488823 23488863 41 CTTTGGGGCCCCCTGTGAGCCGCGACCGTGTCATCGCCAGC CTTTGGGGCCCCCTGTGAGCCGTGACCGTGTCATCGCCAGC < 41bp 0.854355692314517 0.634973576720993 0.12357852 0.096295536 prediction 0.438764231187048 Functional Loss - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23488843 chr22:23488845 synonymous SNV . 0 23 hm5C_associated_SNPs_82354 0 0 0 0 2 RAB36 chr22:23488792 3'AG 23488792 Downstream 54bp
chr22 23488845 23488845 1 + C T UCEC 23488843 + 23488823 23488863 41 CTTTGGGGCCCCCTGTGAGCCGCGACCGTGTCATCGCCAGC CTTTGGGGCCCCCTGTGAGCCGTGACCGTGTCATCGCCAGC < 41bp 0.854355692314517 0.634973576720993 0.12357852 0.096295536 prediction 0.438764231187048 Functional Loss - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23488843 chr22:23488845 synonymous SNV . 0 23 hm5C_associated_SNPs_82354 0 0 0 0 2 RAB36 chr22:23488872 5'GT 23488872 Upstream 28bp
chr7 129098277 129098277 1 + G A COAD 129098274 + 129098254 129098294 41 GCTTTTCCCAAGGGCCTGCCCTGGGCCCCAAAGGTCAGGTA GCTTTTCCCAAGGGCCTGCCCTGAGCCCCAAAGGTCAGGTA < 41bp 0.802967335471637 0.583588187925497 0.3822137 0.3406974 prediction 0.438758295092279 Functional Loss - STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129098274 chr7:129098277 stopgain 1.000 1 24 hm5C_associated_SNPs_82357 0 0 0 0 1 STRIP2 chr7:129098291 5'GT 129098291 Upstream 15bp
chr1 205554083 205554083 1 + G A COAD 205554080 + 205554060 205554100 41 TCCTTCTTTGCCATCCACATCACGGGCGCCCTGGTACTGTT TCCTTCTTTGCCATCCACATCACAGGCGCCCTGGTACTGTT < 41bp 0.799813737096247 0.58043576044745 0.5162174 0.22520629 prediction 0.438755953297594 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205554080 chr1:205554083 synonymous SNV . 0 24 hm5C_associated_SNPs_82358 0 0 0 1 2 MFSD4A chr1:205554004 3'AG 205554004 Downstream 80bp
chr1 205554083 205554083 1 + G A COAD 205554080 + 205554060 205554100 41 TCCTTCTTTGCCATCCACATCACGGGCGCCCTGGTACTGTT TCCTTCTTTGCCATCCACATCACAGGCGCCCTGGTACTGTT < 41bp 0.799813737096247 0.58043576044745 0.5162174 0.22520629 prediction 0.438755953297594 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205554080 chr1:205554083 synonymous SNV . 0 24 hm5C_associated_SNPs_82358 0 0 0 1 2 MFSD4A chr1:205554119 5'GT 205554119 Upstream 37bp
chr9 117396107 117396107 1 + G A GBM 117396104 + 117396084 117396124 41 AATGGAGCCCTCCTGAGACACCGGGTGCTGCTGGGGGTGAC AATGGAGCCCTCCTGAGACACCGAGTGCTGCTGGGGGTGAC < 41bp 0.794688194874232 0.575311568191515 0.8790347 0.5555727 prediction 0.438753253365433 Functional Loss - TMEM268 ENSG00000157693 CDS Human protein_coding chr9:117396104 chr9:117396107 synonymous SNV . 0 24 hm5C_associated_SNPs_82360 0 0 0 0 2 TMEM268 chr9:117396048 3'AG 117396048 Downstream 60bp
chr9 117396107 117396107 1 + G A GBM 117396104 + 117396084 117396124 41 AATGGAGCCCTCCTGAGACACCGGGTGCTGCTGGGGGTGAC AATGGAGCCCTCCTGAGACACCGAGTGCTGCTGGGGGTGAC < 41bp 0.794688194874232 0.575311568191515 0.8790347 0.5555727 prediction 0.438753253365433 Functional Loss - TMEM268 ENSG00000157693 CDS Human protein_coding chr9:117396104 chr9:117396107 synonymous SNV . 0 24 hm5C_associated_SNPs_82360 0 0 0 0 2 TMEM268 chr9:117396158 5'GT 117396158 Upstream 52bp
chr11 47259499 47259499 1 + T C UCEC 47259498 + 47259478 47259518 41 ATCGACGTGTTCGATGGAAACTCAGGGAAGATGATGTGTCA ATCGACGTGTTCGATGGAAACCCAGGGAAGATGATGTGTCA < 41bp 0.719371646557475 0.459696240464183 0.3290511 0.41166192 prediction 0.43874329311495 Functional Loss - DDB2 ENSG00000134574 CDS Human protein_coding chr11:47259498 chr11:47259499 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_82367 0 0 1 2 1 DDB2 chr11:47259552 5'GT 47259552 Upstream 54bp
chr21 47402577 47402577 1 + G A BLCA 47402574 + 47402554 47402594 41 CCGTGGACCTGTTCTTTGTGCTGGACACCTCTGAGAGCGTG CCGTGGACCTGTTCTTTGTGCTGAACACCTCTGAGAGCGTG < 41bp 0.780022316834021 0.560652316384594 0.08262977 0.029648215 prediction 0.438740000898855 Functional Loss - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47402574 chr21:47402577 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_82369 0 0 1 0 1 COL6A1 chr21:47402548 3'AG 47402548 Downstream 30bp
chr19 50173737 50173737 1 + G A UCEC 50173734 + 50173714 50173754 41 TCACGCCCTGGATCCAGGCCCACGGGGGCTGGGTGAGCCGC TCACGCCCTGGATCCAGGCCCACAGGGGCTGGGTGAGCCGC < 41bp 0.767997711656707 0.548636252295725 0.8784577 0.5168586 prediction 0.438722918721964 Functional Loss - BCL2L12 ENSG00000126453 CDS Human protein_coding chr19:50173734 chr19:50173737 nonsynonymous SNV 0.973 3 24 hm5C_associated_SNPs_82374 0 0 0 0 1 BCL2L12 chr19:50173745 5'GT 50173745 Upstream 9bp
chr5 167420026 167420026 1 + G T OV 167420023 + 167420003 167420043 41 CCCGGGATACCCTTTGACCTCAGGAACGGTTTACACGCCCC CCCGGGATACCCTTTGACCTCAGTAACGGTTTACACGCCCC < 41bp 0.719358382417148 0.410143884480479 0.86229366 0.15610155 prediction 0.438716764834296 Functional Loss - TENM2 ENSG00000145934 CDS Human protein_coding chr5:167420023 chr5:167420026 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_82376 0 0 0 0 1 TENM2 chr5:167419949 3'AG 167419949 Downstream 78bp
chr22 35943064 35943064 1 + G A GBM 35943061 + 35943041 35943081 41 TCCGCGGCGACATGTACCAGCTCGACATCCTGGATACCTCT TCCGCGGCGACATGTACCAGCTCAACATCCTGGATACCTCT < 41bp 0.719354879927257 0.472670667697018 0.07393569 0.39395192 prediction 0.438709759854514 Functional Loss - RASD2 ENSG00000100302 CDS Human protein_coding chr22:35943061 chr22:35943064 nonsynonymous SNV 0.878 4 24 hm5C_associated_SNPs_82378 0 0 0 0 1 RASD2 chr22:35943127 5'GT 35943127 Upstream 64bp
chr11 65746385 65746385 1 + C T COAD 65746383 + 65746363 65746403 41 GGCAGCGGCAAGAGCATGAACGCGTGAGTGGCTCGAGGCTG GGCAGCGGCAAGAGCATGAACGTGTGAGTGGCTCGAGGCTG < 41bp 0.806816875973385 0.587463788699643 0.3709384 0.2638922 prediction 0.438706174547484 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65746383 chr11:65746385 nonsynonymous SNV 0.956 3 23 hm5C_associated_SNPs_82380 0 0 0 0 1 SART1 chr11:65746385 5'GT 65746385 Upstream 1bp
chr15 42694998 42694998 1 + G A rs150226817 42694995 + 42694975 42695015 41 CTCTCCCCATCTCTCAGATGCACGGGAACAAGCAGCACCTG CTCTCCCCATCTCTCAGATGCACAGGAACAAGCAGCACCTG < 41bp 0.767663533787942 0.548310625467919 0.111563325 0.099024504 prediction 0.438705816640047 Functional Loss - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42694995 chr15:42694998 nonsynonymous SNV 0.845 4 24 hm5C_associated_SNPs_82381 1 0 1 0 1 CAPN3 chr15:42694992 3'AG 42694992 Downstream 7bp
chr16 30012758 30012758 1 + A C rs4389160 30012754 + 30012734 30012774 41 GCTGGCCTCCTCCCGCTACCCCCCATTCCCTTCTGACTACC GCTGGCCTCCTCCCGCTACCCCCCCTTCCCTTCTGACTACC < 41bp 0.719342464793769 0.29529427546169 0.028236806 0.015285939 prediction 0.438684929587537 Functional Loss - INO80E ENSG00000169592 CDS Human protein_coding chr16:30012754 chr16:30012758 synonymous SNV . 0 25 hm5C_associated_SNPs_82384 0 0 1 2 2 INO80E chr16:30012735 3'AG 30012735 Downstream 24bp
chr16 30012758 30012758 1 + A C rs4389160 30012754 + 30012734 30012774 41 GCTGGCCTCCTCCCGCTACCCCCCATTCCCTTCTGACTACC GCTGGCCTCCTCCCGCTACCCCCCCTTCCCTTCTGACTACC < 41bp 0.719342464793769 0.29529427546169 0.028236806 0.015285939 prediction 0.438684929587537 Functional Loss - INO80E ENSG00000169592 CDS Human protein_coding chr16:30012754 chr16:30012758 synonymous SNV . 0 25 hm5C_associated_SNPs_82384 0 0 1 2 2 INO80E chr16:30012851 5'GT 30012851 Upstream 94bp
chr6 168370482 168370482 1 + G A UCEC 168370479 + 168370459 168370499 41 CAGCCAAGATGCAGATTCACCTGGAAGTTCTGGGGCCCCTG CAGCCAAGATGCAGATTCACCTGAAAGTTCTGGGGCCCCTG < 41bp 0.719337424030307 0.489685864746024 0.37956834 0.06806013 prediction 0.438674848060614 Functional Loss - AFDN ENSG00000130396 CDS Human protein_coding chr6:168370479 chr6:168370482 nonsynonymous SNV 0.985 3 24 hm5C_associated_SNPs_82387 0 0 1 0 1 AFDN chr6:168370462 3'AG 168370462 Downstream 21bp
chr17 4644951 4644951 1 + C T UCEC 4644948 + 4644928 4644968 41 GCACCATCTTGGGCATTGATCTGCTAGTGGATGGAGCCCAG GCACCATCTTGGGCATTGATCTGTTAGTGGATGGAGCCCAG < 41bp 0.722423816805073 0.50308783931859 0.1093089 0.079271406 prediction 0.438671954972966 Functional Loss - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4644948 chr17:4644951 synonymous SNV . 0 24 hm5C_associated_SNPs_82388 0 0 0 0 1 ZMYND15 chr17:4644877 3'AG 4644877 Downstream 75bp
chr6 109294619 109294619 1 + C T SKCM 109294616 + 109294596 109294636 41 ACCTAAAAAACTATCACAAACTCCATTGGGAAACAGAATTC ACCTAAAAAACTATCACAAACTCTATTGGGAAACAGAATTC < 41bp 0.747940555923192 0.528607749899714 0.9359069 0.3454012 prediction 0.438665612046956 Functional Loss - ARMC2 ENSG00000118690 CDS Human protein_coding chr6:109294616 chr6:109294619 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_82390 0 0 1 0 1 ARMC2 chr6:109294560 3'AG 109294560 Downstream 60bp
chr2 30457355 30457355 1 + G A SKCM 30457352 + 30457332 30457372 41 GAGATCGGCCTCAGCCCCCGCAAGGATGGCCTTTCCTACCA GAGATCGGCCTCAGCCCCCGCAAAGATGGCCTTTCCTACCA < 41bp 0.800757538521581 0.581426023898693 0.84344494 0.3757828 prediction 0.438663029245775 Functional Loss - LBH ENSG00000213626 CDS Human protein_coding chr2:30457352 chr2:30457355 synonymous SNV . 0 24 hm5C_associated_SNPs_82391 0 0 1 0 2 LBH chr2:30457271 3'AG 30457271 Downstream 85bp
chr2 30457355 30457355 1 + G A SKCM 30457352 + 30457332 30457372 41 GAGATCGGCCTCAGCCCCCGCAAGGATGGCCTTTCCTACCA GAGATCGGCCTCAGCCCCCGCAAAGATGGCCTTTCCTACCA < 41bp 0.800757538521581 0.581426023898693 0.84344494 0.3757828 prediction 0.438663029245775 Functional Loss - LBH ENSG00000213626 CDS Human protein_coding chr2:30457352 chr2:30457355 synonymous SNV . 0 24 hm5C_associated_SNPs_82391 0 0 1 0 2 LBH chr2:30457373 5'GT 30457373 Upstream 19bp
chr2 206588596 206588596 1 + C T UCEC 206588594 + 206588574 206588614 41 ATCCTCTCCCTGACCTTTCACACGGACATGGCGGTGGCCAA ATCCTCTCCCTGACCTTTCACATGGACATGGCGGTGGCCAA < 41bp 0.719330430236777 0.431872140322603 0.74155533 0.8157875 prediction 0.438660860473554 Functional Loss - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206588594 chr2:206588596 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_82394 0 0 0 0 1 NRP2 chr2:206588509 3'AG 206588509 Downstream 88bp
chr11 57243663 57243663 1 + T C PRAD 57243662 + 57243642 57243682 41 TGTTCGCGGACCTGGCCAACCTGAGCCACCTCTTCCTCCAC TGTTCGCGGACCTGGCCAACCCGAGCCACCTCTTCCTCCAC < 41bp 0.719329704288225 0.485487298009861 0.57754046 0.67098486 prediction 0.438659408576449 Functional Loss - RTN4RL2 ENSG00000186907 CDS Human protein_coding chr11:57243662 chr11:57243663 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_82396 0 0 1 0 1 RTN4RL2 chr11:57243635 3'AG 57243635 Downstream 29bp
chr5 55204136 55204136 1 + G A LUAD 55204133 + 55204113 55204153 41 ACCAAGGTGGAGAACATTGGCGTGAAGACGGTCACGATCAC ACCAAGGTGGAGAACATTGGCGTAAAGACGGTCACGATCAC < 41bp 0.768057501762467 0.548729975514242 0.34499305 0.16160145 prediction 0.438655052496451 Functional Loss - IL31RA ENSG00000164509 CDS Human protein_coding chr5:55204133 chr5:55204136 synonymous SNV . 0 24 hm5C_associated_SNPs_82398 0 0 0 0 2 IL31RA chr5:55204093 3'AG 55204093 Downstream 44bp
chr5 55204136 55204136 1 + G A LUAD 55204133 + 55204113 55204153 41 ACCAAGGTGGAGAACATTGGCGTGAAGACGGTCACGATCAC ACCAAGGTGGAGAACATTGGCGTAAAGACGGTCACGATCAC < 41bp 0.768057501762467 0.548729975514242 0.34499305 0.16160145 prediction 0.438655052496451 Functional Loss - IL31RA ENSG00000164509 CDS Human protein_coding chr5:55204133 chr5:55204136 synonymous SNV . 0 24 hm5C_associated_SNPs_82398 0 0 0 0 2 IL31RA chr5:55204224 5'GT 55204224 Upstream 89bp
chr3 50324141 50324141 1 + G A UCEC 50324138 + 50324118 50324158 41 CCCCTATCTAACTGAAGAGGCACGACCGTGGGATGAGCTGC CCCCTATCTAACTGAAGAGGCACAACCGTGGGATGAGCTGC < 41bp 0.801160528713013 0.581835543009547 0.10060257 0.10412097 prediction 0.438649971406931 Functional Loss - LSMEM2 ENSG00000179564 CDS Human protein_coding chr3:50324138 chr3:50324141 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_82399 0 0 0 0 1 LSMEM2 chr3:50324105 3'AG 50324105 Downstream 37bp
chr7 36338663 36338663 1 + G A SKCM 36338660 + 36338640 36338680 41 GCCTCACGAACCCTTGGATTCCGGATAACTGGTCTTGGGGC GCCTCACGAACCCTTGGATTCCGAATAACTGGTCTTGGGGC < 41bp 0.719324125635946 0.476917912451178 0.9302031 0.8885476 prediction 0.438648251271893 Functional Loss - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36338660 chr7:36338663 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_82401 0 0 0 0 1 EEPD1 chr7:36338616 3'AG 36338616 Downstream 48bp
chr17 15609718 15609718 1 + G T GBM 15609715 + 15609695 15609735 41 TTTTAGGAAACAGTGACATTCAAGGATGTGGCCATGGACTT TTTTAGGAAACAGTGACATTCAATGATGTGGCCATGGACTT < 41bp 0.719321018854911 0.326574279323184 0.75290954 0.13520542 prediction 0.438642037709823 Functional Loss - ZNF286A ENSG00000187607;ENSG00000255104 CDS Human other chr17:15609715 chr17:15609718 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_82404 0 0 1 0 2 ZNF286A chr17:15609701 3'AG 15609701 Downstream 18bp
chr17 15609718 15609718 1 + G T GBM 15609715 + 15609695 15609735 41 TTTTAGGAAACAGTGACATTCAAGGATGTGGCCATGGACTT TTTTAGGAAACAGTGACATTCAATGATGTGGCCATGGACTT < 41bp 0.719321018854911 0.326574279323184 0.75290954 0.13520542 prediction 0.438642037709823 Functional Loss - ZNF286A ENSG00000187607;ENSG00000255104 CDS Human other chr17:15609715 chr17:15609718 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_82404 0 0 1 0 2 ZNF286A chr17:15609815 5'GT 15609815 Upstream 98bp
chr2 233925301 233925301 1 + G A HNSC 233925298 + 233925278 233925318 41 GCGTGCCAGCGAGTCCATCTCCCGGGCATACGCGCTCTGCG GCGTGCCAGCGAGTCCATCTCCCAGGCATACGCGCTCTGCG < 41bp 0.719320710223044 0.465942937862594 0.734601 0.26177177 prediction 0.438641420446088 Functional Loss - INPP5D ENSG00000168918 CDS Human protein_coding chr2:233925298 chr2:233925301 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_82405 0 0 1 0 1 INPP5D chr2:233925322 5'GT 233925322 Upstream 22bp
chr10 105172904 105172904 1 + G A STAD 105172901 + 105172881 105172921 41 CTGCATCCTTTGCGTCCATCCTCGAACCAGAGTTGTGCACC CTGCATCCTTTGCGTCCATCCTCAAACCAGAGTTGTGCACC < 41bp 0.796330162477071 0.57701061142982 0.89052135 0.37105685 prediction 0.438639102094502 Functional Loss - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105172901 chr10:105172904 nonsynonymous SNV 0.990 0 24 hm5C_associated_SNPs_82406 0 0 1 0 1 PDCD11 chr10:105172873 3'AG 105172873 Downstream 32bp
chr20 1277002 1277002 1 + G A STAD 1276999 + 1276979 1277019 41 ACCGCCCATCCCACCCCTTACTCGGACCCACAGCCTCATGG ACCGCCCATCCCACCCCTTACTCAGACCCACAGCCTCATGG < 41bp 0.719317125856842 0.464828607459774 0.064483255 0.030101508 prediction 0.438634251713684 Functional Loss - SNPH ENSG00000101298;ENSG00000244588 CDS Human other chr20:1276999 chr20:1277002 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_82407 0 0 0 0 2 SNPH chr20:1276969 3'AG 1276969 Downstream 34bp
chr20 1277002 1277002 1 + G A STAD 1276999 + 1276979 1277019 41 ACCGCCCATCCCACCCCTTACTCGGACCCACAGCCTCATGG ACCGCCCATCCCACCCCTTACTCAGACCCACAGCCTCATGG < 41bp 0.719317125856842 0.464828607459774 0.064483255 0.030101508 prediction 0.438634251713684 Functional Loss - SNPH ENSG00000101298;ENSG00000244588 CDS Human protein_coding chr20:1276999 chr20:1277002 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_82407 0 0 0 0 2 SNPH chr20:1277065 5'GT 1277065 Upstream 64bp
chr16 19087089 19087089 1 + C T CESC 19087086 + 19087066 19087106 41 AAGGAAGGTGCCATGGCCTGCACCGTGGCGGTGGAAGAGAG AAGGAAGGTGCCATGGCCTGCACTGTGGCGGTGGAAGAGAG < 41bp 0.719313938605854 0.491516972499484 0.15408608 0.083553195 prediction 0.438627877211709 Functional Loss - COQ7 ENSG00000167186 CDS Human protein_coding chr16:19087086 chr16:19087089 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_82409 0 0 1 0 2 COQ7 chr16:19087043 3'AG 19087043 Downstream 47bp
chr16 19087089 19087089 1 + C T CESC 19087086 + 19087066 19087106 41 AAGGAAGGTGCCATGGCCTGCACCGTGGCGGTGGAAGAGAG AAGGAAGGTGCCATGGCCTGCACTGTGGCGGTGGAAGAGAG < 41bp 0.719313938605854 0.491516972499484 0.15408608 0.083553195 prediction 0.438627877211709 Functional Loss - COQ7 ENSG00000167186 CDS Human protein_coding chr16:19087086 chr16:19087089 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_82409 0 0 1 0 2 COQ7 chr16:19087182 5'GT 19087182 Upstream 94bp
chr10 72498695 72498695 1 + G A STAD 72498692 + 72498672 72498712 41 GACCAAGTTTGGGTCATGTTCGCGGTCATGTGGGGGCGGGG GACCAAGTTTGGGTCATGTTCGCAGTCATGTGGGGGCGGGG < 41bp 0.815167056938316 0.595860007540669 0.9056783 0.7941017 prediction 0.438614098795293 Functional Loss - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72498692 chr10:72498695 nonsynonymous SNV 0.676 4 24 hm5C_associated_SNPs_82413 0 0 1 0 2 ADAMTS14 chr10:72498598 3'AG 72498598 Downstream 98bp
chr10 72498695 72498695 1 + G A STAD 72498692 + 72498672 72498712 41 GACCAAGTTTGGGTCATGTTCGCGGTCATGTGGGGGCGGGG GACCAAGTTTGGGTCATGTTCGCAGTCATGTGGGGGCGGGG < 41bp 0.815167056938316 0.595860007540669 0.9056783 0.7941017 prediction 0.438614098795293 Functional Loss - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72498692 chr10:72498695 nonsynonymous SNV 0.676 4 24 hm5C_associated_SNPs_82413 0 0 1 0 2 ADAMTS14 chr10:72498746 5'GT 72498746 Upstream 52bp
chr16 4744970 4744970 1 + C T HNSC 4744968 + 4744948 4744988 41 TGTCTGCGCAGGTGCTGGGCCTCGTGCGGGTCCCGCTGTAC TGTCTGCGCAGGTGCTGGGCCTTGTGCGGGTCCCGCTGTAC < 41bp 0.719302688475011 0.476155789122022 0.524879 0.5050404 prediction 0.438605376950023 Functional Loss - NUDT16L1 ENSG00000168101 CDS Human protein_coding chr16:4744968 chr16:4744970 nonsynonymous SNV 0.958 0 23 hm5C_associated_SNPs_82415 0 0 1 0 1 NUDT16L1 chr16:4744959 3'AG 4744959 Downstream 12bp
chr12 124104003 124104003 1 + G A UCEC 124104000 + 124103980 124104020 41 TCTTGATTTTGCCAGCCTTGCTCGAGGTTTTGCCCTGCTGA TCTTGATTTTGCCAGCCTTGCTCAAGGTTTTGCCCTGCTGA < 41bp 0.793732817043318 0.574435987062894 0.17625651 0.3098855 prediction 0.438593659960848 Functional Loss - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124104000 chr12:124104003 nonsynonymous SNV 0.948 0 24 hm5C_associated_SNPs_82416 0 0 1 0 2 DDX55 chr12:124103979 3'AG 124103979 Downstream 25bp
chr12 124104003 124104003 1 + G A UCEC 124104000 + 124103980 124104020 41 TCTTGATTTTGCCAGCCTTGCTCGAGGTTTTGCCCTGCTGA TCTTGATTTTGCCAGCCTTGCTCAAGGTTTTGCCCTGCTGA < 41bp 0.793732817043318 0.574435987062894 0.17625651 0.3098855 prediction 0.438593659960848 Functional Loss - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124104000 chr12:124104003 nonsynonymous SNV 0.948 0 24 hm5C_associated_SNPs_82416 0 0 1 0 2 DDX55 chr12:124103995 3'AG 124103995 Downstream 9bp
chr1 161682935 161682935 1 + C T SKCM 161682932 + 161682912 161682952 41 AGCTCCTCAGAAATCAGCTGCTCCAGGAACTGCTCCTGAGG AGCTCCTCAGAAATCAGCTGCTCTAGGAACTGCTCCTGAGG < 41bp 0.71929406100294 0.498148449209198 0.9329636 0.9146502 prediction 0.438588122005881 Functional Loss - FCRLA ENSG00000132185 CDS Human protein_coding chr1:161682932 chr1:161682935 nonsynonymous SNV 0.155 3 24 hm5C_associated_SNPs_82418 0 0 0 0 1 FCRLA chr1:161682875 3'AG 161682875 Downstream 61bp
chrX 2778088 2778088 1 + C T COAD 2778086 + 2778066 2778106 41 GCGTCCAAGCGGGGGAAGCACGCGCGTCTCCTGGTCACACA GCGTCCAAGCGGGGGAAGCACGTGCGTCTCCTGGTCACACA < 41bp 0.823291492520434 0.60400044744949 0.55625445 0.56976384 prediction 0.438582090141887 Functional Loss - GYG2 ENSG00000056998 CDS Human protein_coding chrX:2778086 chrX:2778088 synonymous SNV . 0 23 hm5C_associated_SNPs_82422 1 0 0 0 1 GYG2 chrX:2778106 5'GT 2778106 Upstream 19bp
chr2 176973703 176973703 1 + G A BLCA 176973700 + 176973680 176973720 41 ACCAGATCCGCGAACTGGAACGCGAGTTTTTCTTTAACGTG ACCAGATCCGCGAACTGGAACGCAAGTTTTTCTTTAACGTG < 41bp 0.719288947545659 0.487114078038955 0.1884416 0.074929 prediction 0.438577895091318 Functional Loss - HOXD11 ENSG00000128713 CDS Human protein_coding chr2:176973700 chr2:176973703 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_82423 0 0 1 0 1 HOXD11 chr2:176973635 3'AG 176973635 Downstream 69bp
chr5 1216997 1216997 1 + C T GBM 1216994 + 1216974 1217014 41 ATGCAGCAGCGGTGCAACGCCTCCGACCCCGCGGCCTACGC ATGCAGCAGCGGTGCAACGCCTCTGACCCCGCGGCCTACGC < 41bp 0.719287647611453 0.491352067341492 0.15638563 0.059637517 prediction 0.438575295222907 Functional Loss - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1216994 chr5:1216997 synonymous SNV . 0 24 hm5C_associated_SNPs_82424 0 0 0 0 2 SLC6A19 chr5:1216904 3'AG 1216904 Downstream 94bp
chr5 1216997 1216997 1 + C T GBM 1216994 + 1216974 1217014 41 ATGCAGCAGCGGTGCAACGCCTCCGACCCCGCGGCCTACGC ATGCAGCAGCGGTGCAACGCCTCTGACCCCGCGGCCTACGC < 41bp 0.719287647611453 0.491352067341492 0.15638563 0.059637517 prediction 0.438575295222907 Functional Loss - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1216994 chr5:1216997 synonymous SNV . 0 24 hm5C_associated_SNPs_82424 0 0 0 0 2 SLC6A19 chr5:1217060 5'GT 1217060 Upstream 64bp
chr19 38817886 38817886 1 + T C COAD 38817885 + 38817865 38817905 41 CCTTCCGCCACGTGTCCGACCTCCACGGCCTCACGGAGCTC CCTTCCGCCACGTGTCCGACCCCCACGGCCTCACGGAGCTC < 41bp 0.83430426860289 0.615016715488464 0.92279184 0.11642766 prediction 0.438575106228852 Functional Loss - KCNK6 ENSG00000099337 CDS Human protein_coding chr19:38817885 chr19:38817886 nonsynonymous SNV 0.391 3 22 hm5C_associated_SNPs_82425 0 0 0 0 1 KCNK6 chr19:38817820 3'AG 38817820 Downstream 67bp
chr5 159476549 159476549 1 + G A LGG 159476546 + 159476526 159476566 41 CAATTAAACCCCAGCTATATCAGGGCAATATTGAGGAGAGC CAATTAAACCCCAGCTATATCAGAGCAATATTGAGGAGAGC < 41bp 0.760101335541583 0.540817655009777 0.92403543 0.9006338 prediction 0.438567361063612 Functional Loss - TTC1 ENSG00000113312 CDS Human protein_coding chr5:159476546 chr5:159476549 synonymous SNV . 0 24 hm5C_associated_SNPs_82427 0 0 1 0 1 TTC1 chr5:159476521 3'AG 159476521 Downstream 29bp
chr13 52602505 52602505 1 + G T LUAD 52602503 + 52602483 52602523 41 AATTATCCTTGCACACAATTCGGGGGGCCCAAAGCTTGACA AATTATCCTTGCACACAATTCGTGGGGCCCAAAGCTTGACA < 41bp 0.77898867763507 0.559709824722028 0.92051846 0.19059253 prediction 0.438557705826086 Functional Loss - ALG11 ENSG00000253710 CDS Human protein_coding chr13:52602503 chr13:52602505 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_82430 0 0 1 0 1 ALG11 chr13:52602455 3'AG 52602455 Downstream 51bp
chr1 20416369 20416369 1 + G A LUAD 20416366 + 20416346 20416386 41 CAGTCCTACAAATACAGATTCGCGTGGGGCGTGGTCACCTG CAGTCCTACAAATACAGATTCGCATGGGGCGTGGTCACCTG < 41bp 0.798159418891473 0.57888654092552 0.28845155 0.11367664 prediction 0.438545755931904 Functional Loss - PLA2G5 ENSG00000127472 CDS Human protein_coding chr1:20416366 chr1:20416369 synonymous SNV . 0 24 hm5C_associated_SNPs_82437 0 0 0 0 2 PLA2G5 chr1:20416282 3'AG 20416282 Downstream 88bp
chr1 20416369 20416369 1 + G A LUAD 20416366 + 20416346 20416386 41 CAGTCCTACAAATACAGATTCGCGTGGGGCGTGGTCACCTG CAGTCCTACAAATACAGATTCGCATGGGGCGTGGTCACCTG < 41bp 0.798159418891473 0.57888654092552 0.28845155 0.11367664 prediction 0.438545755931904 Functional Loss - PLA2G5 ENSG00000127472 CDS Human protein_coding chr1:20416366 chr1:20416369 synonymous SNV . 0 24 hm5C_associated_SNPs_82437 0 0 0 0 2 PLA2G5 chr1:20416388 5'GT 20416388 Upstream 20bp
chr5 94024258 94024258 1 + T C HNSC 94024257 + 94024237 94024277 41 GAAAACTGGTGTGCTTGGGTCTGGAAAGATTCAGGTGTCAA GAAAACTGGTGTGCTTGGGTCCGGAAAGATTCAGGTGTCAA < 41bp 0.795529025804863 0.576262015041956 0.110881716 0.1760763 prediction 0.438534021525814 Functional Loss - SLF1 ENSG00000133302 CDS Human protein_coding chr5:94024257 chr5:94024258 synonymous SNV . 0 22 hm5C_associated_SNPs_82439 0 0 1 0 1 SLF1 chr5:94024211 3'AG 94024211 Downstream 48bp
chr1 11576111 11576111 1 + G A CESC 11576108 + 11576088 11576128 41 CCTACCGCCAGGCCACCCACCTGGAAGACCCACAGCTGCGC CCTACCGCCAGGCCACCCACCTGAAAGACCCACAGCTGCGC < 41bp 0.792818959311725 0.573557974504092 0.36487347 0.21667147 prediction 0.438521969615268 Functional Loss - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11576108 chr1:11576111 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_82447 0 0 0 0 1 DISP3 chr1:11576058 3'AG 11576058 Downstream 54bp
chrX 10180547 10180547 1 + C T PAAD 10180545 + 10180525 10180565 41 ATCCCCAGCATGGCTGTGGGCGCGATAGCGGGCAGGATGGT ATCCCCAGCATGGCTGTGGGCGTGATAGCGGGCAGGATGGT < 41bp 0.864628239275237 0.645367580755481 0.55862194 0.5093602 prediction 0.438521317039513 Functional Loss - CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10180545 chrX:10180547 nonsynonymous SNV 0.897 5 23 hm5C_associated_SNPs_82449 0 0 0 0 1 CLCN4 chrX:10180507 3'AG 10180507 Downstream 41bp
chr19 48253514 48253514 1 + G A CESC 48253511 + 48253491 48253531 41 CTTCGGGTTGACCTCATCCTCGAGAACACATCCAAAGTCCC CTTCGGGTTGACCTCATCCTCGAAAACACATCCAAAGTCCC < 41bp 0.786217290999047 0.566958486995757 0.43405154 0.0890612 prediction 0.438517608006581 Functional Loss - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48253511 chr19:48253514 synonymous SNV . 0 24 hm5C_associated_SNPs_82450 0 0 1 0 1 NOP53 chr19:48253435 3'AG 48253435 Downstream 80bp
chr3 50231088 50231088 1 + G A STAD 50231085 + 50231065 50231105 41 TCGGAGTACCAGCTCAACGACTCGGCGGGCTAGTGAGCGCG TCGGAGTACCAGCTCAACGACTCAGCGGGCTAGTGAGCGCG < 41bp 0.797231577365383 0.577975743237508 0.08664358 0.027341783 prediction 0.43851166825575 Functional Loss - GNAT1 ENSG00000114349 CDS Human protein_coding chr3:50231085 chr3:50231088 synonymous SNV . 0 24 hm5C_associated_SNPs_82452 0 0 0 0 1 GNAT1 chr3:50231096 5'GT 50231096 Upstream 9bp
chr11 66252663 66252663 1 + C T STAD 66252661 + 66252641 66252681 41 CAGGCGTTCCTGGTCTATGCCGCGGGTGTTTACTCCAACAT CAGGCGTTCCTGGTCTATGCCGTGGGTGTTTACTCCAACAT < 41bp 0.833353272872473 0.61409859370667 0.77702403 0.6597593 prediction 0.438509358331605 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66252661 chr11:66252663 nonsynonymous SNV 0.986 2 23 hm5C_associated_SNPs_82453 0 0 0 0 2 DPP3 chr11:66252644 3'AG 66252644 Downstream 20bp
chr11 66252663 66252663 1 + C T STAD 66252661 + 66252641 66252681 41 CAGGCGTTCCTGGTCTATGCCGCGGGTGTTTACTCCAACAT CAGGCGTTCCTGGTCTATGCCGTGGGTGTTTACTCCAACAT < 41bp 0.833353272872473 0.61409859370667 0.77702403 0.6597593 prediction 0.438509358331605 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66252661 chr11:66252663 nonsynonymous SNV 0.986 2 23 hm5C_associated_SNPs_82453 0 0 0 0 2 DPP3 chr11:66252733 5'GT 66252733 Upstream 71bp
chr7 99987604 99987604 1 + G C LUSC 99987600 + 99987580 99987620 41 CAACCGGCCTCAGGGTCACACAGGGCAAACGACGCTCAGAC CAACCGGCCTCAGGGTCACACAGGCCAAACGACGCTCAGAC < 41bp 0.876068524913859 0.656823706227519 0.9087682 0.89464307 prediction 0.438489637372679 Functional Loss - PILRA ENSG00000085514 CDS Human protein_coding chr7:99987600 chr7:99987604 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_82459 0 0 0 0 1 PILRA chr7:99987511 3'AG 99987511 Downstream 94bp
chr7 73470665 73470665 1 + C T STAD 73470663 + 73470643 73470683 41 GGGTTGGAGCTGGGGGCTTTCCCGGCTTTGGTGTCGGAGTC GGGTTGGAGCTGGGGGCTTTCCTGGCTTTGGTGTCGGAGTC < 41bp 0.781414077260314 0.562169956913821 0.92833614 0.92318654 prediction 0.438488240692986 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73470663 chr7:73470665 synonymous SNV . 0 23 hm5C_associated_SNPs_82460 0 0 0 0 1 ELN chr7:73470601 3'AG 73470601 Downstream 65bp
chr10 81113493 81113493 1 + C T COAD 81113491 + 81113471 81113511 41 GCAAGCATGTTGTGTTCGGTCACGTCAAAGAGGGCATGGAC GCAAGCATGTTGTGTTCGGTCATGTCAAAGAGGGCATGGAC < 41bp 0.719238569972495 0.450676227113814 0.10935041 0.10638073 prediction 0.438477139944991 Functional Loss - PPIF ENSG00000108179 CDS Human protein_coding chr10:81113491 chr10:81113493 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_82466 0 0 1 0 1 PPIF chr10:81113463 3'AG 81113463 Downstream 31bp
chr1 53708118 53708118 1 + G A rs114279479 53708115 + 53708095 53708135 41 ACATTTGGTTTTCAGTTTACCAAGATGATGCCAGTATAGCT ACATTTGGTTTTCAGTTTACCAAAATGATGCCAGTATAGCT < 41bp 0.734366213589529 0.515127681590597 0.092347294 0.09701076 prediction 0.438477063997864 Functional Loss - LOC100507564 ENSG00000226754;ENSG00000270172 ncRNA_exonic Human other chr1:53708115 chr1:53708118 . . 0 24 hm5C_associated_SNPs_82467 0 0 0 0 1 LOC100507564 chr1:53708110 3'AG 53708110 Downstream 9bp
chr2 10443298 10443298 1 + G A rs114933097 10443295 + 10443275 10443315 41 CCGGCGGACCGCGTCCTGCGCCGGAGCAGGTAGGGAAGGGG CCGGCGGACCGCGTCCTGCGCCGAAGCAGGTAGGGAAGGGG < 41bp 0.784174640727328 0.564937818056622 0.8347914 0.3839342 prediction 0.438473645341412 Functional Loss - HPCAL1 ENSG00000115756 UTR5 Human protein_coding chr2:10443295 chr2:10443298 . . 0 24 hm5C_associated_SNPs_82469 0 0 1 0 1 HPCAL1 chr2:10443303 5'GT 10443303 Upstream 6bp
chr7 43485133 43485133 1 + G A UCEC 43485130 + 43485110 43485150 41 TGGAAAGAAGCCCGGAAGGTCTGGAATCCCCCGTGGCAGGT TGGAAAGAAGCCCGGAAGGTCTGAAATCCCCCGTGGCAGGT < 41bp 0.766423348144337 0.547188928817167 0.49151328 0.1632913 prediction 0.43846883865434 Functional Loss - HECW1 ENSG00000002746 CDS Human protein_coding chr7:43485130 chr7:43485133 nonsynonymous SNV 0.986 1 24 hm5C_associated_SNPs_82470 0 0 0 0 1 HECW1 chr7:43485169 5'GT 43485169 Upstream 37bp
chr7 142494849 142494849 1 + C T STAD 142494847 + 142494827 142494867 41 CAGGCACGCGGCTCCTGGTGCTCGGTGAGCGCGGGCTGCTG CAGGCACGCGGCTCCTGGTGCTTGGTGAGCGCGGGCTGCTG < 41bp 0.728865117359385 0.509632860318263 0.27790794 0.28312075 prediction 0.438464514082245 Functional Loss - PRSS3P2;EPHB6 ENSG00000211769 CDS Human TR_J_gene chr7:142494847 chr7:142494849 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_82471 0 0 0 0 1 PRSS3P2;EPHB6 chr7:142494850 5'GT 142494850 Upstream 2bp
chr10 90427093 90427093 1 + A T LUSC 90427089 + 90427069 90427109 41 AACAATGGCAAGTTTGATATCTGTACTGGGGACTACACATG AACAATGGCAAGTTTGATATCTGTTCTGGGGACTACACATG < 41bp 0.719229033269904 0.393869918122695 0.13028055 0.1617192 prediction 0.438458066539807 Functional Loss - LIPF ENSG00000182333 CDS Human protein_coding chr10:90427089 chr10:90427093 synonymous SNV . 0 25 hm5C_associated_SNPs_82474 0 0 0 0 2 LIPF chr10:90427044 3'AG 90427044 Downstream 50bp
chr10 90427093 90427093 1 + A T LUSC 90427089 + 90427069 90427109 41 AACAATGGCAAGTTTGATATCTGTACTGGGGACTACACATG AACAATGGCAAGTTTGATATCTGTTCTGGGGACTACACATG < 41bp 0.719229033269904 0.393869918122695 0.13028055 0.1617192 prediction 0.438458066539807 Functional Loss - LIPF ENSG00000182333 CDS Human protein_coding chr10:90427089 chr10:90427093 synonymous SNV . 0 25 hm5C_associated_SNPs_82474 0 0 0 0 2 LIPF chr10:90427159 5'GT 90427159 Upstream 67bp
chr19 33464193 33464193 1 + G A UCEC 33464190 + 33464170 33464210 41 AGAAATGGCGCGGGTCACAGCTGGCGCAGGAGATGCAAGGT AGAAATGGCGCGGGTCACAGCTGACGCAGGAGATGCAAGGT < 41bp 0.810529368052855 0.5913006584324 0.550864 0.13102135 prediction 0.438457419240908 Functional Loss - FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33464190 chr19:33464193 nonsynonymous SNV 0.709 2 24 hm5C_associated_SNPs_82476 0 0 0 0 1 FAAP24 chr19:33464208 5'GT 33464208 Upstream 16bp
chr5 148619370 148619370 1 + G A SKCM 148619367 + 148619347 148619387 41 GGCAGAGACGGGCCTCCAGCCCGGGGTACATAGACTCCCCC GGCAGAGACGGGCCTCCAGCCCGAGGTACATAGACTCCCCC < 41bp 0.775210926450216 0.555990071096039 0.92150795 0.8604541 prediction 0.438441710708355 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148619367 chr5:148619370 nonsynonymous SNV 0.877 3 24 hm5C_associated_SNPs_82479 0 0 0 0 2 ABLIM3 chr5:148619322 3'AG 148619322 Downstream 49bp
chr5 148619370 148619370 1 + G A SKCM 148619367 + 148619347 148619387 41 GGCAGAGACGGGCCTCCAGCCCGGGGTACATAGACTCCCCC GGCAGAGACGGGCCTCCAGCCCGAGGTACATAGACTCCCCC < 41bp 0.775210926450216 0.555990071096039 0.92150795 0.8604541 prediction 0.438441710708355 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148619367 chr5:148619370 nonsynonymous SNV 0.877 3 24 hm5C_associated_SNPs_82479 0 0 0 0 2 ABLIM3 chr5:148619451 5'GT 148619451 Upstream 82bp
chr5 149931403 149931403 1 + G A SKCM 149931400 + 149931380 149931420 41 AAAGCAAGGGCCGGAAATATCCCGAGATGGACTTGGATGTA AAAGCAAGGGCCGGAAATATCCCAAGATGGACTTGGATGTA < 41bp 0.786806687227073 0.567586553278229 0.25007525 0.089196116 prediction 0.438440267897689 Functional Loss - NDST1 ENSG00000070614 CDS Human protein_coding chr5:149931400 chr5:149931403 nonsynonymous SNV 0.953 1 24 hm5C_associated_SNPs_82481 0 0 1 0 2 NDST1 chr5:149931315 3'AG 149931315 Downstream 89bp
chr5 149931403 149931403 1 + G A SKCM 149931400 + 149931380 149931420 41 AAAGCAAGGGCCGGAAATATCCCGAGATGGACTTGGATGTA AAAGCAAGGGCCGGAAATATCCCAAGATGGACTTGGATGTA < 41bp 0.786806687227073 0.567586553278229 0.25007525 0.089196116 prediction 0.438440267897689 Functional Loss - NDST1 ENSG00000070614 CDS Human protein_coding chr5:149931400 chr5:149931403 nonsynonymous SNV 0.953 1 24 hm5C_associated_SNPs_82481 0 0 1 0 2 NDST1 chr5:149931417 5'GT 149931417 Upstream 15bp
chr1 43825052 43825052 1 + C T CESC 43825050 + 43825030 43825070 41 ATCCCACAGCGCCGGCAGGACTCCGGGCCGAACTCCTGGTC ATCCCACAGCGCCGGCAGGACTTCGGGCCGAACTCCTGGTC < 41bp 0.821710105227247 0.60249356733076 0.72334236 0.49518198 prediction 0.438433075792973 Functional Loss - CDC20 ENSG00000117399 CDS Human protein_coding chr1:43825050 chr1:43825052 nonsynonymous SNV 0.829 2 23 hm5C_associated_SNPs_82486 0 0 1 0 1 CDC20 chr1:43825067 5'GT 43825067 Upstream 16bp
chr11 124745514 124745514 1 + G T UCEC 124745512 + 124745492 124745532 41 GCCTTGGGGGGTGATGGCAACAGCAGTATCACTGTGTCCTG GCCTTGGGGGGTGATGGCAACATCAGTATCACTGTGTCCTG < 41bp 0.911317115925122 0.692103452252992 0.8499944 0.6889867 prediction 0.43842732734426 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124745512 chr11:124745514 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_82488 0 0 0 0 2 ROBO3 chr11:124745460 3'AG 124745460 Downstream 55bp
chr11 124745514 124745514 1 + G T UCEC 124745512 + 124745492 124745532 41 GCCTTGGGGGGTGATGGCAACAGCAGTATCACTGTGTCCTG GCCTTGGGGGGTGATGGCAACATCAGTATCACTGTGTCCTG < 41bp 0.911317115925122 0.692103452252992 0.8499944 0.6889867 prediction 0.43842732734426 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124745512 chr11:124745514 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_82488 0 0 0 0 2 ROBO3 chr11:124745581 5'GT 124745581 Upstream 68bp
chr4 154216478 154216478 1 + A C UCEC 154216477 + 154216457 154216497 41 TCCCGCAGGTCCTCCAGTCGCAGCTGGATACTCTGCTCCAG TCCCGCAGGTCCTCCAGTCGCCGCTGGATACTCTGCTCCAG < 41bp 0.71920955268001 0.455671666943686 0.89721256 0.74375975 prediction 0.438419105360019 Functional Loss - TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154216477 chr4:154216478 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_82492 0 0 0 0 1 TRIM2 chr4:154216465 3'AG 154216465 Downstream 14bp
chr16 28905901 28905901 1 + C T UCEC 28905898 + 28905878 28905918 41 CTGGCCACCATCTGTGCCCTCTGCAATGACTCCTCCTTGGA CTGGCCACCATCTGTGCCCTCTGTAATGACTCCTCCTTGGA < 41bp 0.739372073367164 0.520162550076883 0.5079605 0.20846257 prediction 0.438419046580563 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28905898 chr16:28905901 synonymous SNV . 0 24 hm5C_associated_SNPs_82493 0 0 1 0 2 ATP2A1 chr16:28905826 3'AG 28905826 Downstream 76bp
chr16 28905901 28905901 1 + C T UCEC 28905898 + 28905878 28905918 41 CTGGCCACCATCTGTGCCCTCTGCAATGACTCCTCCTTGGA CTGGCCACCATCTGTGCCCTCTGTAATGACTCCTCCTTGGA < 41bp 0.739372073367164 0.520162550076883 0.5079605 0.20846257 prediction 0.438419046580563 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28905898 chr16:28905901 synonymous SNV . 0 24 hm5C_associated_SNPs_82493 0 0 1 0 2 ATP2A1 chr16:28905928 5'GT 28905928 Upstream 28bp
chr6 106987327 106987327 1 + G A LUSC 106987324 + 106987304 106987344 41 TTCAGGGTGTTCCTTTCATCCTGGAACCTGGTGAATACCCT TTCAGGGTGTTCCTTTCATCCTGAAACCTGGTGAATACCCT < 41bp 0.752002544719883 0.532793148764112 0.3389008 0.21156922 prediction 0.438418791911542 Functional Loss - CRYBG1 ENSG00000112297 CDS Human protein_coding chr6:106987324 chr6:106987327 nonsynonymous SNV 0.985 4 24 hm5C_associated_SNPs_82494 0 0 1 0 2 CRYBG1 chr6:106987278 3'AG 106987278 Downstream 50bp
chr6 106987327 106987327 1 + G A LUSC 106987324 + 106987304 106987344 41 TTCAGGGTGTTCCTTTCATCCTGGAACCTGGTGAATACCCT TTCAGGGTGTTCCTTTCATCCTGAAACCTGGTGAATACCCT < 41bp 0.752002544719883 0.532793148764112 0.3389008 0.21156922 prediction 0.438418791911542 Functional Loss - CRYBG1 ENSG00000112297 CDS Human protein_coding chr6:106987324 chr6:106987327 nonsynonymous SNV 0.985 4 24 hm5C_associated_SNPs_82494 0 0 1 0 2 CRYBG1 chr6:106987404 5'GT 106987404 Upstream 78bp
chr11 66838961 66838961 1 + G A ACC 66838958 + 66838938 66838978 41 GGCCTACCTCGAGTGCTCGGCTCGGCTCCATGACAACGTCC GGCCTACCTCGAGTGCTCGGCTCAGCTCCATGACAACGTCC < 41bp 0.719209111869876 0.478974514737104 0.15003923 0.12404281 prediction 0.438418223739752 Functional Loss - RHOD ENSG00000173156 CDS Human protein_coding chr11:66838958 chr11:66838961 nonsynonymous SNV 0.869 1 24 hm5C_associated_SNPs_82495 0 0 0 0 1 RHOD chr11:66838906 3'AG 66838906 Downstream 56bp
chr13 113508641 113508641 1 + G A rs142008475 113508638 + 113508618 113508658 41 ATCGAGGCCCTGCAGAAGGCCGGGATCAAAGTCTGGGTTCT ATCGAGGCCCTGCAGAAGGCCGGAATCAAAGTCTGGGTTCT < 41bp 0.794963633997089 0.575757310209573 0.89728236 0.6003133 prediction 0.438412647575033 Functional Loss - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113508638 chr13:113508641 synonymous SNV . 0 24 hm5C_associated_SNPs_82499 0 0 1 0 1 ATP11A chr13:113508593 3'AG 113508593 Downstream 49bp
chr7 31003737 31003737 1 + G C ESCA 31003736 + 31003716 31003756 41 CTGCGTGTTGAGCCCGTTACCGACCGTGAGTAGCCAGCTGA CTGCGTGTTGAGCCCGTTACCCACCGTGAGTAGCCAGCTGA < 41bp 0.719205264130679 0.406261718717006 0.7603245 0.09547576 prediction 0.438410528261357 Functional Loss - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31003736 chr7:31003737 synonymous SNV . 0 22 hm5C_associated_SNPs_82500 0 0 0 0 1 GHRHR chr7:31003740 5'GT 31003740 Upstream 4bp
chr19 19650554 19650554 1 + G T SARC 19650551 + 19650531 19650571 41 GGAAAGACGGTCCGTGTACACCGGCCAGCCCTCACCAGCCC GGAAAGACGGTCCGTGTACACCGTCCAGCCCTCACCAGCCC < 41bp 0.719201126065761 0.312573220768487 0.5563721 0.27528435 prediction 0.438402252131523 Functional Loss - CILP2 ENSG00000160161 CDS Human protein_coding chr19:19650551 chr19:19650554 nonsynonymous SNV 0.042 2 24 hm5C_associated_SNPs_82501 0 0 0 0 2 CILP2 chr19:19650488 3'AG 19650488 Downstream 67bp
chr19 19650554 19650554 1 + G T SARC 19650551 + 19650531 19650571 41 GGAAAGACGGTCCGTGTACACCGGCCAGCCCTCACCAGCCC GGAAAGACGGTCCGTGTACACCGTCCAGCCCTCACCAGCCC < 41bp 0.719201126065761 0.312573220768487 0.5563721 0.27528435 prediction 0.438402252131523 Functional Loss - CILP2 ENSG00000160161 CDS Human protein_coding chr19:19650551 chr19:19650554 nonsynonymous SNV 0.042 2 24 hm5C_associated_SNPs_82501 0 0 0 0 2 CILP2 chr19:19650586 5'GT 19650586 Upstream 33bp
chr17 48561859 48561859 1 + G A rs577265481 48561856 + 48561836 48561876 41 TGGGATGTGTTTGGAGCGAACAAGGAGGTGCAGGAGCTGCT TGGGATGTGTTTGGAGCGAACAAAGAGGTGCAGGAGCTGCT < 41bp 0.799880175648591 0.580684719531547 0.8914298 0.37556678 prediction 0.438390912234088 Functional Loss - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48561856 chr17:48561859 synonymous SNV . 0 24 hm5C_associated_SNPs_82505 0 0 1 0 2 RSAD1 chr17:48561803 3'AG 48561803 Downstream 57bp
chr17 48561859 48561859 1 + G A rs577265481 48561856 + 48561836 48561876 41 TGGGATGTGTTTGGAGCGAACAAGGAGGTGCAGGAGCTGCT TGGGATGTGTTTGGAGCGAACAAAGAGGTGCAGGAGCTGCT < 41bp 0.799880175648591 0.580684719531547 0.8914298 0.37556678 prediction 0.438390912234088 Functional Loss - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48561856 chr17:48561859 synonymous SNV . 0 24 hm5C_associated_SNPs_82505 0 0 1 0 2 RSAD1 chr17:48561906 5'GT 48561906 Upstream 48bp
chr10 118203981 118203981 1 + C T UCEC 118203978 + 118203958 118203998 41 ACATCCATGCTGTAAACAATCTCCGTGTTGTTGGTGCTGAG ACATCCATGCTGTAAACAATCTCTGTGTTGTTGGTGCTGAG < 41bp 0.736522108502884 0.517331269900003 0.24514887 0.115575254 prediction 0.438381677205761 Functional Loss - PNLIPRP3 ENSG00000203837 CDS Human protein_coding chr10:118203978 chr10:118203981 nonsynonymous SNV 0.008 5 24 hm5C_associated_SNPs_82508 0 0 0 0 2 PNLIPRP3 chr10:118203894 3'AG 118203894 Downstream 88bp
chr10 118203981 118203981 1 + C T UCEC 118203978 + 118203958 118203998 41 ACATCCATGCTGTAAACAATCTCCGTGTTGTTGGTGCTGAG ACATCCATGCTGTAAACAATCTCTGTGTTGTTGGTGCTGAG < 41bp 0.736522108502884 0.517331269900003 0.24514887 0.115575254 prediction 0.438381677205761 Functional Loss - PNLIPRP3 ENSG00000203837 CDS Human protein_coding chr10:118203978 chr10:118203981 nonsynonymous SNV 0.008 5 24 hm5C_associated_SNPs_82508 0 0 0 0 2 PNLIPRP3 chr10:118204025 5'GT 118204025 Upstream 45bp
chr14 64911421 64911421 1 + G A LUAD 64911418 + 64911398 64911438 41 CTTTTCCTTCCAGGTCACTGCTGGACTGCCTCTTCCCAAGG CTTTTCCTTCCAGGTCACTGCTGAACTGCCTCTTCCCAAGG < 41bp 0.719186836300241 0.46997878738013 0.26703143 0.16058695 prediction 0.438373672600483 Functional Loss - MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64911418 chr14:64911421 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_82512 0 0 1 0 2 MTHFD1 chr14:64911411 3'AG 64911411 Downstream 11bp
chr14 64911421 64911421 1 + G A LUAD 64911418 + 64911398 64911438 41 CTTTTCCTTCCAGGTCACTGCTGGACTGCCTCTTCCCAAGG CTTTTCCTTCCAGGTCACTGCTGAACTGCCTCTTCCCAAGG < 41bp 0.719186836300241 0.46997878738013 0.26703143 0.16058695 prediction 0.438373672600483 Functional Loss - MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64911418 chr14:64911421 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_82512 0 0 1 0 2 MTHFD1 chr14:64911452 5'GT 64911452 Upstream 32bp
chr1 230415120 230415120 1 + G A UCEC 230415117 + 230415097 230415137 41 AACCTGTGCCTGGACAGTCGCACGGCCAAGAGCGGGGGCCT AACCTGTGCCTGGACAGTCGCACAGCCAAGAGCGGGGGCCT < 41bp 0.774724107380672 0.555537631345587 0.78194857 0.3828556 prediction 0.438372952070168 Functional Loss - GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230415117 chr1:230415120 synonymous SNV . 0 24 hm5C_associated_SNPs_82513 0 0 0 0 1 GALNT2 chr1:230415049 3'AG 230415049 Downstream 72bp
chr12 28458701 28458701 1 + G T PRAD 28458699 + 28458679 28458719 41 ATCACCAGAGAATACACATGCAGCAAATAGCATTGTGAGTC ATCACCAGAGAATACACATGCATCAAATAGCATTGTGAGTC < 41bp 0.719182111727911 0.393398899738346 0.12581065 0.02805528 prediction 0.438364223455822 Functional Loss - CCDC91 ENSG00000123106 CDS Human protein_coding chr12:28458699 chr12:28458701 nonsynonymous SNV 0.041 0 23 hm5C_associated_SNPs_82516 0 0 1 0 1 CCDC91 chr12:28458739 5'GT 28458739 Upstream 39bp
chr3 111667826 111667826 1 + G A SKCM 111667823 + 111667803 111667843 41 AATGAGCCGTGTGGCAATTCCACGAATCTATCCCCTTCCAC AATGAGCCGTGTGGCAATTCCACAAATCTATCCCCTTCCAC < 41bp 0.758980566232899 0.539801128744702 0.26436305 0.23578456 prediction 0.438358874976393 Functional Loss - PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111667823 chr3:111667826 synonymous SNV . 0 24 hm5C_associated_SNPs_82517 0 0 0 0 2 PHLDB2 chr3:111667779 3'AG 111667779 Downstream 48bp
chr3 111667826 111667826 1 + G A SKCM 111667823 + 111667803 111667843 41 AATGAGCCGTGTGGCAATTCCACGAATCTATCCCCTTCCAC AATGAGCCGTGTGGCAATTCCACAAATCTATCCCCTTCCAC < 41bp 0.758980566232899 0.539801128744702 0.26436305 0.23578456 prediction 0.438358874976393 Functional Loss - PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111667823 chr3:111667826 synonymous SNV . 0 24 hm5C_associated_SNPs_82517 0 0 0 0 2 PHLDB2 chr3:111667922 5'GT 111667922 Upstream 97bp
chr11 62381902 62381902 1 + G A LUAD 62381899 + 62381879 62381919 41 ACCTCTGGGCCCAAGGGTGCCATGAGGTGCTGCTGGAGCAC ACCTCTGGGCCCAAGGGTGCCATAAGGTGCTGCTGGAGCAC < 41bp 0.79013325769238 0.570960284536931 0.5424008 0.4262869 prediction 0.438345946310897 Functional Loss - ROM1 ENSG00000149489 CDS Human protein_coding chr11:62381899 chr11:62381902 nonsynonymous SNV 0.873 1 24 hm5C_associated_SNPs_82521 0 0 0 0 1 ROM1 chr11:62381976 5'GT 62381976 Upstream 75bp
chr20 17445975 17445975 1 + G A BLCA 17445972 + 17445952 17445992 41 CTCTGCTTCCTGTATCCAGCCTGGGTCTGACCTGGCGGGAC CTCTGCTTCCTGTATCCAGCCTGAGTCTGACCTGGCGGGAC < 41bp 0.719172546294504 0.472075682616616 0.28844613 0.14980754 prediction 0.438345092589008 Functional Loss - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17445972 chr20:17445975 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_82522 0 0 0 0 1 PCSK2 chr20:17445971 3'AG 17445971 Downstream 5bp
chr5 176079825 176079825 1 + G A STAD 176079822 + 176079802 176079842 41 TTGTCTTCAAGGACTGGATTCGAGACCAGCTCAACCTCTTC TTGTCTTCAAGGACTGGATTCGAAACCAGCTCAACCTCTTC < 41bp 0.791579672127377 0.572407594684466 0.103731185 0.07982102 prediction 0.438344154885822 Functional Loss - TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176079822 chr5:176079825 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_82523 0 0 1 0 2 TSPAN17 chr5:176079744 3'AG 176079744 Downstream 82bp
chr5 176079825 176079825 1 + G A STAD 176079822 + 176079802 176079842 41 TTGTCTTCAAGGACTGGATTCGAGACCAGCTCAACCTCTTC TTGTCTTCAAGGACTGGATTCGAAACCAGCTCAACCTCTTC < 41bp 0.791579672127377 0.572407594684466 0.103731185 0.07982102 prediction 0.438344154885822 Functional Loss - TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176079822 chr5:176079825 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_82523 0 0 1 0 2 TSPAN17 chr5:176079914 5'GT 176079914 Upstream 90bp
chr20 47538519 47538519 1 + G T SARC 47538517 + 47538497 47538537 41 TGAAGCGGCCCCAGCACTCCCAGCTGCGCAGGGCCTGCCAG TGAAGCGGCCCCAGCACTCCCATCTGCGCAGGGCCTGCCAG < 41bp 0.719167026351785 0.368757455543078 0.89781046 0.85773385 prediction 0.438334052703569 Functional Loss - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47538517 chr20:47538519 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_82524 0 0 1 0 1 ARFGEF2 chr20:47538547 5'GT 47538547 Upstream 29bp
chr11 102220740 102220740 1 + C T CESC 102220737 + 102220717 102220757 41 CTGTGAACTCTACAGAATGTCTACATATTCAACTTTCCCCG CTGTGAACTCTACAGAATGTCTATATATTCAACTTTCCCCG < 41bp 0.7253063917297 0.506141445396358 0.8123208 0.16805074 prediction 0.438329892666685 Functional Loss - BIRC2 ENSG00000110330 CDS Human protein_coding chr11:102220737 chr11:102220740 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_82525 0 0 1 0 1 BIRC2 chr11:102220732 3'AG 102220732 Downstream 9bp
chr20 48431593 48431593 1 + C T COAD 48431590 + 48431570 48431610 41 GGTTTCAATGTCACCCTCCACACCACCCTGGTTGTCACGAC GGTTTCAATGTCACCCTCCACACTACCCTGGTTGTCACGAC < 41bp 0.719156214861082 0.490958729039076 0.008815765 0.010498434 prediction 0.438312429722165 Functional Loss - SLC9A8 ENSG00000197818 CDS Human protein_coding chr20:48431590 chr20:48431593 synonymous SNV . 0 24 hm5C_associated_SNPs_82528 0 0 0 0 1 SLC9A8 chr20:48431545 3'AG 48431545 Downstream 49bp
chr19 1271030 1271030 1 + C T CESC 1271028 + 1271008 1271048 41 TTCTCAAAGTACGGACAGATCTCTGAAGGTGAGGCTGCTGC TTCTCAAAGTACGGACAGATCTTTGAAGGTGAGGCTGCTGC < 41bp 0.719152600793072 0.449848191177007 0.13873509 0.087165475 prediction 0.438305201586144 Functional Loss - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1271028 chr19:1271030 nonsynonymous SNV 0.340 3 23 hm5C_associated_SNPs_82530 0 0 1 0 1 CIRBP chr19:1271035 5'GT 1271035 Upstream 6bp
chr1 155288489 155288489 1 + G T UCEC 155288486 + 155288466 155288506 41 AGACTGAGATTGGGCAGACCCTGGACCTCCTCACAGCCCCC AGACTGAGATTGGGCAGACCCTGTACCTCCTCACAGCCCCC < 41bp 0.932699268618468 0.713547151295426 0.84850085 0.27308306 prediction 0.438304234646084 Functional Loss - FDPS ENSG00000160752 CDS Human protein_coding chr1:155288486 chr1:155288489 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_82531 0 0 1 0 1 FDPS chr1:155288544 5'GT 155288544 Upstream 56bp
chr6 69666007 69666007 1 + A T LUSC 69666003 + 69665983 69666023 41 GCAGAGAAGCCGGCAGTGCACTGCAGCTGCCCATGGAGGCT GCAGAGAAGCCGGCAGTGCACTGCTGCTGCCCATGGAGGCT < 41bp 0.859680294364339 0.640530036334913 0.1125128 0.030071914 prediction 0.438300516058852 Functional Loss - ADGRB3 ENSG00000135298 CDS Human protein_coding chr6:69666003 chr6:69666007 synonymous SNV . 0 25 hm5C_associated_SNPs_82533 0 0 0 0 2 ADGRB3 chr6:69665916 3'AG 69665916 Downstream 92bp
chr6 69666007 69666007 1 + A T LUSC 69666003 + 69665983 69666023 41 GCAGAGAAGCCGGCAGTGCACTGCAGCTGCCCATGGAGGCT GCAGAGAAGCCGGCAGTGCACTGCTGCTGCCCATGGAGGCT < 41bp 0.859680294364339 0.640530036334913 0.1125128 0.030071914 prediction 0.438300516058852 Functional Loss - ADGRB3 ENSG00000135298 CDS Human protein_coding chr6:69666003 chr6:69666007 synonymous SNV . 0 25 hm5C_associated_SNPs_82533 0 0 0 0 2 ADGRB3 chr6:69666080 5'GT 69666080 Upstream 74bp
chr10 118196289 118196289 1 + C T BRCA 118196287 + 118196267 118196307 41 TTACCATGGACCAGGACTTTCTCAACAGAGTTGGTAGGTTT TTACCATGGACCAGGACTTTCTTAACAGAGTTGGTAGGTTT < 41bp 0.719149688285607 0.427740931662355 0.37456948 0.065131575 prediction 0.438299376571214 Functional Loss - PNLIPRP3 ENSG00000203837 CDS Human protein_coding chr10:118196287 chr10:118196289 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_82534 0 0 0 0 2 PNLIPRP3 chr10:118196223 3'AG 118196223 Downstream 67bp
chr10 118196289 118196289 1 + C T BRCA 118196287 + 118196267 118196307 41 TTACCATGGACCAGGACTTTCTCAACAGAGTTGGTAGGTTT TTACCATGGACCAGGACTTTCTTAACAGAGTTGGTAGGTTT < 41bp 0.719149688285607 0.427740931662355 0.37456948 0.065131575 prediction 0.438299376571214 Functional Loss - PNLIPRP3 ENSG00000203837 CDS Human protein_coding chr10:118196287 chr10:118196289 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_82534 0 0 0 0 2 PNLIPRP3 chr10:118196377 5'GT 118196377 Upstream 89bp
chr22 25251280 25251280 1 + G A GBM 25251277 + 25251257 25251297 41 CCCTGTGCCCTAGAGTACACCAAGATGAAGACTGCAGATCA CCCTGTGCCCTAGAGTACACCAAAATGAAGACTGCAGATCA < 41bp 0.719142430291906 0.478956019045576 0.2985688 0.50336754 prediction 0.438284860583813 Functional Loss - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25251277 chr22:25251280 synonymous SNV . 0 24 hm5C_associated_SNPs_82540 0 0 0 0 1 SGSM1 chr22:25251252 3'AG 25251252 Downstream 29bp
chr18 47091749 47091749 1 + C T UCEC 47091746 + 47091726 47091766 41 AACCATCTGTGAGGTTTAACCTCCGCACCTCCAAGGACCCA AACCATCTGTGAGGTTTAACCTCTGCACCTCCAAGGACCCA < 41bp 0.739292278748646 0.520158439971211 0.022310823 0.009670079 prediction 0.43826767755487 Functional Loss - LIPG ENSG00000101670 CDS Human protein_coding chr18:47091746 chr18:47091749 nonsynonymous SNV 0.689 3 24 hm5C_associated_SNPs_82545 0 0 0 0 1 LIPG chr18:47091687 3'AG 47091687 Downstream 63bp
chr14 55004493 55004493 1 + C T KIRC 55004490 + 55004470 55004510 41 GATAGGACTTATAAACTATCCTGCAGAATATTGTATCAATA GATAGGACTTATAAACTATCCTGTAGAATATTGTATCAATA < 41bp 0.738187990650631 0.51905489618016 0.08212119 0.119591 prediction 0.438266188940942 Functional Loss - CGRRF1 ENSG00000100532 CDS Human protein_coding chr14:55004490 chr14:55004493 synonymous SNV . 0 24 hm5C_associated_SNPs_82547 0 0 1 3 2 CGRRF1 chr14:55004440 3'AG 55004440 Downstream 54bp
chr14 55004493 55004493 1 + C T KIRC 55004490 + 55004470 55004510 41 GATAGGACTTATAAACTATCCTGCAGAATATTGTATCAATA GATAGGACTTATAAACTATCCTGTAGAATATTGTATCAATA < 41bp 0.738187990650631 0.51905489618016 0.08212119 0.119591 prediction 0.438266188940942 Functional Loss - CGRRF1 ENSG00000100532 CDS Human protein_coding chr14:55004490 chr14:55004493 synonymous SNV . 0 24 hm5C_associated_SNPs_82547 0 0 1 3 2 CGRRF1 chr14:55004547 5'GT 55004547 Upstream 55bp
chr6 35438387 35438387 1 + G A UCEC 35438384 + 35438364 35438404 41 GTCTGGCTGTAGCTGTTGGTCACGTGAAGATGACAGACGAT GTCTGGCTGTAGCTGTTGGTCACATGAAGATGACAGACGAT < 41bp 0.778709936228132 0.559583260369279 0.42284492 0.3521107 prediction 0.438253351717706 Functional Loss - RPL10A ENSG00000198755 CDS Human protein_coding chr6:35438384 chr6:35438387 nonsynonymous SNV 0.976 2 24 hm5C_associated_SNPs_82549 0 0 1 0 1 RPL10A chr6:35438357 3'AG 35438357 Downstream 31bp
chr1 2493252 2493252 1 + G A SKCM 2493249 + 2493229 2493269 41 ATGTGTGAAAAGAAGAAAGCCAAGGGGTGAGCACACGGCGG ATGTGTGAAAAGAAGAAAGCCAAAGGGTGAGCACACGGCGG < 41bp 0.794740607774584 0.575615242171566 0.5536622 0.28169686 prediction 0.438250731206036 Functional Loss - TNFRSF14 ENSG00000157873 CDS Human protein_coding chr1:2493249 chr1:2493252 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_82551 0 0 1 0 1 TNFRSF14 chr1:2493254 5'GT 2493254 Upstream 3bp
chr12 110925695 110925695 1 + G A SKCM 110925692 + 110925672 110925712 41 AACTGGATATGCATCTAAAACAAGATGTAAGTCACTGAAGA AACTGGATATGCATCTAAAACAAAATGTAAGTCACTGAAGA < 41bp 0.723388409939537 0.504265310982649 0.46208945 0.28195807 prediction 0.438246197913776 Functional Loss - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110925692 chr12:110925695 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_82552 0 0 1 0 2 FAM216A chr12:110925666 3'AG 110925666 Downstream 30bp
chr12 110925695 110925695 1 + G A SKCM 110925692 + 110925672 110925712 41 AACTGGATATGCATCTAAAACAAGATGTAAGTCACTGAAGA AACTGGATATGCATCTAAAACAAAATGTAAGTCACTGAAGA < 41bp 0.723388409939537 0.504265310982649 0.46208945 0.28195807 prediction 0.438246197913776 Functional Loss - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110925692 chr12:110925695 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_82552 0 0 1 0 2 FAM216A chr12:110925748 5'GT 110925748 Upstream 54bp
chr17 72466360 72466360 1 + G A rs144912906 72466357 + 72466337 72466377 41 GAAACACAAGCCTGGGAGCACTGGGGATCCATGTGATCGTT GAAACACAAGCCTGGGAGCACTGAGGATCCATGTGATCGTT < 41bp 0.754774766672886 0.535653744019424 0.6240891 0.13970625 prediction 0.438242045306925 Functional Loss - CD300A ENSG00000167851 UTR5 Human protein_coding chr17:72466357 chr17:72466360 . . 0 24 hm5C_associated_SNPs_82553 0 0 0 0 1 CD300A chr17:72466381 5'GT 72466381 Upstream 22bp
chr22 20105156 20105156 1 + G T rs542523991 20105154 + 20105134 20105174 41 CGACCGACCCAGCCGAGCCGCCGCCGCCGCCGCGCCCCCAT CGACCGACCCAGCCGAGCCGCCTCCGCCGCCGCGCCCCCAT < 41bp 0.719115626008093 0.443968177153079 0.46371874 0.09865734 prediction 0.438231252016187 Functional Loss - RANBP1 ENSG00000099901 UTR5 Human protein_coding chr22:20105154 chr22:20105156 . . 0 23 hm5C_associated_SNPs_82555 0 0 1 0 1 RANBP1 chr22:20105187 5'GT 20105187 Upstream 32bp
chr2 239033969 239033969 1 + C T COAD 239033967 + 239033947 239033987 41 CCCCCACCTCCACTGTTGGCCACGAGGCGCTCCCTGGAGGA CCCCCACCTCCACTGTTGGCCATGAGGCGCTCCCTGGAGGA < 41bp 0.815020726718865 0.595907941893217 0.22263634 0.16941306 prediction 0.438225569651296 Functional Loss - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239033967 chr2:239033969 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_82556 0 0 0 0 2 ESPNL chr2:239033911 3'AG 239033911 Downstream 59bp
chr2 239033969 239033969 1 + C T COAD 239033967 + 239033947 239033987 41 CCCCCACCTCCACTGTTGGCCACGAGGCGCTCCCTGGAGGA CCCCCACCTCCACTGTTGGCCATGAGGCGCTCCCTGGAGGA < 41bp 0.815020726718865 0.595907941893217 0.22263634 0.16941306 prediction 0.438225569651296 Functional Loss - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239033967 chr2:239033969 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_82556 0 0 0 0 2 ESPNL chr2:239034025 5'GT 239034025 Upstream 57bp
chr17 12852544 12852544 1 + T C LAML 12852543 + 12852523 12852563 41 GTGGTGGATGTGCAGGAGTACTCGGCAGACCCCCACGCAAT GTGGTGGATGTGCAGGAGTACCCGGCAGACCCCCACGCAAT < 41bp 0.822458809123686 0.603346234125075 0.8885815 0.90734065 prediction 0.438225149997221 Functional Loss - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12852543 chr17:12852544 nonsynonymous SNV 0.977 1 22 hm5C_associated_SNPs_82557 0 0 0 0 2 ARHGAP44 chr17:12852457 3'AG 12852457 Downstream 88bp
chr17 12852544 12852544 1 + T C LAML 12852543 + 12852523 12852563 41 GTGGTGGATGTGCAGGAGTACTCGGCAGACCCCCACGCAAT GTGGTGGATGTGCAGGAGTACCCGGCAGACCCCCACGCAAT < 41bp 0.822458809123686 0.603346234125075 0.8885815 0.90734065 prediction 0.438225149997221 Functional Loss - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12852543 chr17:12852544 nonsynonymous SNV 0.977 1 22 hm5C_associated_SNPs_82557 0 0 0 0 2 ARHGAP44 chr17:12852568 5'GT 12852568 Upstream 25bp
chr16 1559928 1559928 1 + G A HNSC 1559925 + 1559905 1559945 41 AAGAACAGGCTCCTCCCACCCGCGTCTCCCTAGTCCCTGGA AAGAACAGGCTCCTCCCACCCGCATCTCCCTAGTCCCTGGA < 41bp 0.774312806138897 0.555201378859659 0.26526135 0.12513673 prediction 0.438222854558478 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1559925 chr16:1559928 synonymous SNV . 0 24 hm5C_associated_SNPs_82558 0 0 1 0 1 TELO2 chr16:1559831 3'AG 1559831 Downstream 98bp
chr1 93301854 93301854 1 + C T UCEC 93301851 + 93301831 93301871 41 GGTCAGCCAGGTGCCTTCACCTGCTATTTGGATGCAGGCCT GGTCAGCCAGGTGCCTTCACCTGTTATTTGGATGCAGGCCT < 41bp 0.734318506667045 0.515209324280488 0.5192293 0.5791417 prediction 0.438218364773114 Functional Loss - RPL5 ENSG00000122406 CDS Human protein_coding chr1:93301851 chr1:93301854 synonymous SNV . 0 24 hm5C_associated_SNPs_82560 0 0 1 1 1 RPL5 chr1:93301949 5'GT 93301949 Upstream 96bp
chr10 18276423 18276423 1 + C T rs76004511 18276421 + 18276401 18276441 41 GACTTAGAATACGGCTACAGCACGGTGGCTGTCACCCTTCT GACTTAGAATACGGCTACAGCATGGTGGCTGTCACCCTTCT < 41bp 0.843979723571926 0.624873160719155 0.34635115 0.26922512 prediction 0.438213125705542 Functional Loss - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18276421 chr10:18276423 nonsynonymous SNV 0.850 4 23 hm5C_associated_SNPs_82561 0 0 0 0 1 SLC39A12 chr10:18276408 3'AG 18276408 Downstream 16bp
chr2 223917618 223917618 1 + C T LIHC 223917616 + 223917596 223917636 41 CTCCAGCAGCCCCCTGGAGTCCCGTGCGGCCGGCGGCGGCA CTCCAGCAGCCCCCTGGAGTCCTGTGCGGCCGGCGGCGGCA < 41bp 0.809377783936818 0.590275154202021 0.3385282 0.20023662 prediction 0.438205259469593 Functional Loss - KCNE4 ENSG00000152049 CDS Human protein_coding chr2:223917616 chr2:223917618 nonsynonymous SNV 0.169 0 23 hm5C_associated_SNPs_82562 0 0 0 0 1 KCNE4 chr2:223917526 3'AG 223917526 Downstream 93bp
chr12 132401058 132401058 1 + C T rs55815560 132401056 + 132401036 132401076 41 AACCGGACGCTGCCCGACCTCTCGGAGGTGGGACCCTTCCA AACCGGACGCTGCCCGACCTCTTGGAGGTGGGACCCTTCCA < 41bp 0.844938283562405 0.6258365675304 0.19214308 0.17339116 prediction 0.43820343206401 Functional Loss - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132401056 chr12:132401058 nonsynonymous SNV 0.221 0 23 hm5C_associated_SNPs_82563 0 0 1 0 1 ULK1 chr12:132401136 5'GT 132401136 Upstream 79bp
chr15 86822914 86822914 1 + G A PAAD 86822911 + 86822891 86822931 41 AGCTGTTGCAGGCGGAGCATCTGGGAAGTGCTACTATACCC AGCTGTTGCAGGCGGAGCATCTGAGAAGTGCTACTATACCC < 41bp 0.742911387726502 0.523814162914136 0.8049629 0.32425493 prediction 0.438194449624732 Functional Loss - AGBL1 ENSG00000166748 CDS Human other chr15:86822911 chr15:86822914 nonsynonymous SNV 0.202 1 24 hm5C_associated_SNPs_82566 0 0 0 0 1 AGBL1 chr15:86822870 3'AG 86822870 Downstream 45bp
chr14 76548711 76548711 1 + G A BLCA 76548708 + 76548688 76548728 41 TTGCAGGTGGCAGCCCCTCCCAGGTAGGTTAAATCAGATAT TTGCAGGTGGCAGCCCCTCCCAGATAGGTTAAATCAGATAT < 41bp 0.719095946616284 0.479654760476927 0.791221 0.294052 prediction 0.438191893232568 Functional Loss - IFT43 ENSG00000119650 splicing Human protein_coding chr14:76548708 chr14:76548711 . 0.839 0 24 hm5C_associated_SNPs_82567 0 0 1 0 1 IFT43 chr14:76548638 3'AG 76548638 Downstream 74bp
chr3 52514216 52514216 1 + G A UCEC 52514213 + 52514193 52514233 41 TCCTCAGGGTGGTGAAGACTCCCGGCTCTCAGCTGCCCCCT TCCTCAGGGTGGTGAAGACTCCCAGCTCTCAGCTGCCCCCT < 41bp 0.813807519423913 0.594713017491023 0.21578789 0.04831046 prediction 0.438189003865781 Functional Loss - NISCH ENSG00000010322 CDS Human protein_coding chr3:52514213 chr3:52514216 nonsynonymous SNV 0.100 1 24 hm5C_associated_SNPs_82569 0 0 1 0 1 NISCH chr3:52514311 5'GT 52514311 Upstream 96bp
chr12 123889471 123889471 1 + C T COAD 123889469 + 123889449 123889489 41 AAAGGCAGGGGTGTGATTGCCACCAAGCAGTTCTCCCGGGG AAAGGCAGGGGTGTGATTGCCATCAAGCAGTTCTCCCGGGG < 41bp 0.870446867375895 0.651352417898535 0.09245852 0.051492512 prediction 0.438188898954719 Functional Loss - KMT5A ENSG00000183955 CDS Human protein_coding chr12:123889469 chr12:123889471 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_82570 0 0 1 0 1 KMT5A chr12:123889431 3'AG 123889431 Downstream 41bp
chr5 140077223 140077223 1 + C T COAD 140077220 + 140077200 140077240 41 CCACACCACAGAAGAACTTTCTCCAAGAACGGTTGAAGCTT CCACACCACAGAAGAACTTTCTCTAAGAACGGTTGAAGCTT < 41bp 0.785324962532073 0.566231374396745 0.97305894 0.9439944 prediction 0.438187176270656 Functional Loss - HARS2 ENSG00000112855 CDS Human protein_coding chr5:140077220 chr5:140077223 stopgain 0.925 0 24 hm5C_associated_SNPs_82571 0 0 1 0 2 HARS2 chr5:140077154 3'AG 140077154 Downstream 70bp
chr5 140077223 140077223 1 + C T COAD 140077220 + 140077200 140077240 41 CCACACCACAGAAGAACTTTCTCCAAGAACGGTTGAAGCTT CCACACCACAGAAGAACTTTCTCTAAGAACGGTTGAAGCTT < 41bp 0.785324962532073 0.566231374396745 0.97305894 0.9439944 prediction 0.438187176270656 Functional Loss - HARS2 ENSG00000112855 CDS Human protein_coding chr5:140077220 chr5:140077223 stopgain 0.925 0 24 hm5C_associated_SNPs_82571 0 0 1 0 2 HARS2 chr5:140077270 5'GT 140077270 Upstream 48bp
chr19 6744835 6744835 1 + C T UCEC 6744832 + 6744812 6744852 41 ACTCCCACGTCCTTATAGAGCTGCACAAGTCAGGTTTTGCC ACTCCCACGTCCTTATAGAGCTGTACAAGTCAGGTTTTGCC < 41bp 0.719092244345771 0.495536874845392 0.12540683 0.17247155 prediction 0.438184488691542 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6744832 chr19:6744835 nonsynonymous SNV 0.986 2 24 hm5C_associated_SNPs_82573 0 0 1 0 1 TRIP10 chr19:6744811 3'AG 6744811 Downstream 25bp
chr2 25354717 25354717 1 + G A UCEC 25354714 + 25354694 25354734 41 GCTACGACGGGGCGGTCAGCCTCGGCACCAAGATCATCAAG GCTACGACGGGGCGGTCAGCCTCAGCACCAAGATCATCAAG < 41bp 0.791874137572733 0.572784126463466 0.008036733 0.006000161 prediction 0.438180022218534 Functional Loss - EFR3B ENSG00000084710 CDS Human protein_coding chr2:25354714 chr2:25354717 nonsynonymous SNV 0.963 1 24 hm5C_associated_SNPs_82574 0 0 0 0 2 EFR3B chr2:25354619 3'AG 25354619 Downstream 99bp
chr2 25354717 25354717 1 + G A UCEC 25354714 + 25354694 25354734 41 GCTACGACGGGGCGGTCAGCCTCGGCACCAAGATCATCAAG GCTACGACGGGGCGGTCAGCCTCAGCACCAAGATCATCAAG < 41bp 0.791874137572733 0.572784126463466 0.008036733 0.006000161 prediction 0.438180022218534 Functional Loss - EFR3B ENSG00000084710 CDS Human protein_coding chr2:25354714 chr2:25354717 nonsynonymous SNV 0.963 1 24 hm5C_associated_SNPs_82574 0 0 0 0 2 EFR3B chr2:25354780 5'GT 25354780 Upstream 64bp
chr19 30303636 30303636 1 + G C KIRC 30303632 + 30303612 30303652 41 GACACCATGAAGGAGGACGGCGGCGCGGAGTTCTCGGCTCG GACACCATGAAGGAGGACGGCGGCCCGGAGTTCTCGGCTCG < 41bp 0.874706325623895 0.655616952487841 0.8302045 0.4399831 prediction 0.438178746272109 Functional Loss - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30303632 chr19:30303636 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_82575 0 0 1 0 2 CCNE1 chr19:30303596 3'AG 30303596 Downstream 41bp
chr19 30303636 30303636 1 + G C KIRC 30303632 + 30303612 30303652 41 GACACCATGAAGGAGGACGGCGGCGCGGAGTTCTCGGCTCG GACACCATGAAGGAGGACGGCGGCCCGGAGTTCTCGGCTCG < 41bp 0.874706325623895 0.655616952487841 0.8302045 0.4399831 prediction 0.438178746272109 Functional Loss - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30303632 chr19:30303636 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_82575 0 0 1 0 2 CCNE1 chr19:30303683 5'GT 30303683 Upstream 48bp
chr8 86358409 86358409 1 + C T UCEC 86358406 + 86358386 86358426 41 TTCACAAAGTTTGACCCATCCTGCCTGTTCCCGGCATGCCG TTCACAAAGTTTGACCCATCCTGTCTGTTCCCGGCATGCCG < 41bp 0.725452110465803 0.50636467584414 0.04844001 0.03607577 prediction 0.438174869243325 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86358406 chr8:86358409 synonymous SNV . 0 24 hm5C_associated_SNPs_82577 0 0 0 0 1 CA3 chr8:86358371 3'AG 86358371 Downstream 39bp
chr12 4721773 4721773 1 + C T PAAD 4721771 + 4721751 4721791 41 GCATGCTTGGATTCATCAGTCTCGGAACCTCAAGCCACAGC GCATGCTTGGATTCATCAGTCTTGGAACCTCAAGCCACAGC < 41bp 0.847469881131211 0.628385981573912 0.08403593 0.032256424 prediction 0.438167799114599 Functional Loss - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4721771 chr12:4721773 nonsynonymous SNV 0.439 2 23 hm5C_associated_SNPs_82580 0 0 1 0 1 DYRK4 chr12:4721709 3'AG 4721709 Downstream 65bp
chr19 40485749 40485749 1 + G A UCEC 40485746 + 40485726 40485766 41 GCATTCATCCGGGTCGTGGGCTCGGAGTTTGTACAGAAGTA GCATTCATCCGGGTCGTGGGCTCAGAGTTTGTACAGAAGTA < 41bp 0.794746831745138 0.575666218010664 0.18631217 0.1475406 prediction 0.438161227468948 Functional Loss - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40485746 chr19:40485749 synonymous SNV . 0 24 hm5C_associated_SNPs_82582 0 0 1 0 1 PSMC4 chr19:40485724 3'AG 40485724 Downstream 26bp
chr15 69672237 69672237 1 + G A SKCM 69672234 + 69672214 69672254 41 CTCTGCAGGTGTTCCATGAGCAAGGCATCCTGTTCGGCTAC CTCTGCAGGTGTTCCATGAGCAAAGCATCCTGTTCGGCTAC < 41bp 0.812973635719733 0.593893772075834 0.87387633 0.6394058 prediction 0.438159727287799 Functional Loss - PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69672234 chr15:69672237 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_82583 0 0 0 0 1 PAQR5 chr15:69672222 3'AG 69672222 Downstream 16bp
chr19 6821681 6821681 1 + A C SKCM 6821680 + 6821660 6821700 41 TGGACCCCGATCGCCCAGAACAGGGGGATCATGTGAGTAAC TGGACCCCGATCGCCCAGAACCGGGGGATCATGTGAGTAAC < 41bp 0.848397511050268 0.629318589614867 0.921926 0.9271469 prediction 0.438157842870803 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6821680 chr19:6821681 synonymous SNV . 0 22 hm5C_associated_SNPs_82584 0 0 0 0 2 VAV1 chr19:6821633 3'AG 6821633 Downstream 49bp
chr19 6821681 6821681 1 + A C SKCM 6821680 + 6821660 6821700 41 TGGACCCCGATCGCCCAGAACAGGGGGATCATGTGAGTAAC TGGACCCCGATCGCCCAGAACCGGGGGATCATGTGAGTAAC < 41bp 0.848397511050268 0.629318589614867 0.921926 0.9271469 prediction 0.438157842870803 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6821680 chr19:6821681 synonymous SNV . 0 22 hm5C_associated_SNPs_82584 0 0 0 0 2 VAV1 chr19:6821691 5'GT 6821691 Upstream 11bp
chr12 118577321 118577321 1 + C T SKCM 118577319 + 118577299 118577339 41 ATCAGCAGTGGCACAGTCCTCTCCGATTATGTGGGCTCGGG ATCAGCAGTGGCACAGTCCTCTTCGATTATGTGGGCTCGGG < 41bp 0.863674451755968 0.644597088296641 0.1945554 0.0910165 prediction 0.438154726918656 Functional Loss - PEBP1 ENSG00000089220 CDS Human protein_coding chr12:118577319 chr12:118577321 nonsynonymous SNV 0.983 4 23 hm5C_associated_SNPs_82585 0 0 1 0 2 PEBP1 chr12:118577256 3'AG 118577256 Downstream 66bp
chr12 118577321 118577321 1 + C T SKCM 118577319 + 118577299 118577339 41 ATCAGCAGTGGCACAGTCCTCTCCGATTATGTGGGCTCGGG ATCAGCAGTGGCACAGTCCTCTTCGATTATGTGGGCTCGGG < 41bp 0.863674451755968 0.644597088296641 0.1945554 0.0910165 prediction 0.438154726918656 Functional Loss - PEBP1 ENSG00000089220 CDS Human protein_coding chr12:118577319 chr12:118577321 nonsynonymous SNV 0.983 4 23 hm5C_associated_SNPs_82585 0 0 1 0 2 PEBP1 chr12:118577356 5'GT 118577356 Upstream 36bp
chr12 107126731 107126731 1 + G T UCEC 107126729 + 107126709 107126749 41 CCGAGAAGAGATCATCTTGACAGAGGCTGCCGCACCAACCC CCGAGAAGAGATCATCTTGACATAGGCTGCCGCACCAACCC < 41bp 0.719076249157301 0.351335981326336 0.79183817 0.09689063 prediction 0.438152498314601 Functional Loss - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107126729 chr12:107126731 stopgain 0.984 0 23 hm5C_associated_SNPs_82586 0 0 0 0 1 RFX4 chr12:107126702 3'AG 107126702 Downstream 30bp
chr9 77286749 77286749 1 + G A SKCM 77286746 + 77286726 77286766 41 CAAGGAAAGTCCAGAAGCTTCAGGAAAAAATTTATTTTGCA CAAGGAAAGTCCAGAAGCTTCAGAAAAAAATTTATTTTGCA < 41bp 0.719075785813484 0.498207793829609 0.49043772 0.35629737 prediction 0.438151571626967 Functional Loss - RORB ENSG00000198963 CDS Human protein_coding chr9:77286746 chr9:77286749 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_82587 0 0 0 0 2 RORB chr9:77286705 3'AG 77286705 Downstream 45bp
chr9 77286749 77286749 1 + G A SKCM 77286746 + 77286726 77286766 41 CAAGGAAAGTCCAGAAGCTTCAGGAAAAAATTTATTTTGCA CAAGGAAAGTCCAGAAGCTTCAGAAAAAAATTTATTTTGCA < 41bp 0.719075785813484 0.498207793829609 0.49043772 0.35629737 prediction 0.438151571626967 Functional Loss - RORB ENSG00000198963 CDS Human protein_coding chr9:77286746 chr9:77286749 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_82587 0 0 0 0 2 RORB chr9:77286817 5'GT 77286817 Upstream 69bp
chr7 142562484 142562484 1 + G A rs55728646 142562481 + 142562461 142562501 41 CCAGCCTGGATACCAACCAGCACGAGGAGACAAGGCCTGCC CCAGCCTGGATACCAACCAGCACAAGGAGACAAGGCCTGCC < 41bp 0.796179827296993 0.577106808791212 0.25093573 0.23205122 prediction 0.438146037011562 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142562481 chr7:142562484 nonsynonymous SNV 0.363 0 24 hm5C_associated_SNPs_82589 0 0 0 0 1 EPHB6 chr7:142562504 5'GT 142562504 Upstream 21bp
chr19 41727831 41727831 1 + C T LUAD 41727828 + 41727808 41727848 41 CCCGAAGACAGGACTGTGGCCGCCAACACCCCCTTCAACCT CCCGAAGACAGGACTGTGGCCGCTAACACCCCCTTCAACCT < 41bp 0.719072031430161 0.494500181034457 0.38654903 0.30280286 prediction 0.438144062860322 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41727828 chr19:41727831 synonymous SNV . 0 24 hm5C_associated_SNPs_82591 0 0 1 0 1 AXL chr19:41727785 3'AG 41727785 Downstream 47bp
chr10 124800006 124800006 1 + G T UCEC 124800004 + 124799984 124800024 41 GATGGGTATTGAAGTTGACCCAGAATATGGAGGCACAGGAG GATGGGTATTGAAGTTGACCCATAATATGGAGGCACAGGAG < 41bp 0.719071411112932 0.381317331064747 0.23023412 0.05545664 prediction 0.438142822225864 Functional Loss - ACADSB ENSG00000196177 CDS Human protein_coding chr10:124800004 chr10:124800006 stopgain 0.454 0 23 hm5C_associated_SNPs_82592 0 0 0 0 1 ACADSB chr10:124799982 3'AG 124799982 Downstream 25bp
chr22 25023485 25023485 1 + C T SKCM 25023482 + 25023462 25023502 41 ACCACTCACCCGATCTCCTACTACAAGCCCGAGTTCTACAC ACCACTCACCCGATCTCCTACTATAAGCCCGAGTTCTACAC < 41bp 0.71906934091965 0.497816041557344 0.63190114 0.4268916 prediction 0.438138681839301 Functional Loss - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25023482 chr22:25023485 synonymous SNV . 0 24 hm5C_associated_SNPs_82594 0 0 0 0 1 GGT1 chr22:25023399 3'AG 25023399 Downstream 87bp
chr19 3434290 3434290 1 + G A CESC 3434287 + 3434267 3434307 41 CTCTGCAGCACCCGTGGTGACTGGAACAGGACCCAACTTCT CTCTGCAGCACCCGTGGTGACTGAAACAGGACCCAACTTCT < 41bp 0.719065497558752 0.474314724272774 0.3763944 0.29999524 prediction 0.438130995117504 Functional Loss - NFIC ENSG00000141905 CDS Human protein_coding chr19:3434287 chr19:3434290 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_82596 0 0 1 0 1 NFIC chr19:3434275 3'AG 3434275 Downstream 16bp
chr12 53689395 53689395 1 + T C PRAD 53689394 + 53689374 53689414 41 CGGAGCTGAATCTGCCGCAGCTAGAAATGCTCAAGAACCAG CGGAGCTGAATCTGCCGCAGCCAGAAATGCTCAAGAACCAG < 41bp 0.742984727143901 0.523920739658291 0.11129454 0.19976965 prediction 0.438127974971219 Functional Loss - PFDN5 ENSG00000123349 CDS Human protein_coding chr12:53689394 chr12:53689395 nonsynonymous SNV 0.970 2 22 hm5C_associated_SNPs_82598 0 0 1 0 1 PFDN5 chr12:53689423 5'GT 53689423 Upstream 29bp
chr11 119003427 119003427 1 + C T GBM 119003424 + 119003404 119003444 41 CCTGCCCGCTGCCTTCCTCCCTCCGCAACCACATGCGCTTT CCTGCCCGCTGCCTTCCTCCCTCTGCAACCACATGCGCTTT < 41bp 0.747275991564911 0.528214457988136 0.06971675 0.14597556 prediction 0.43812306715355 Functional Loss - HINFP ENSG00000172273 CDS Human protein_coding chr11:119003424 chr11:119003427 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_82599 0 0 1 0 2 HINFP chr11:119003371 3'AG 119003371 Downstream 57bp
chr11 119003427 119003427 1 + C T GBM 119003424 + 119003404 119003444 41 CCTGCCCGCTGCCTTCCTCCCTCCGCAACCACATGCGCTTT CCTGCCCGCTGCCTTCCTCCCTCTGCAACCACATGCGCTTT < 41bp 0.747275991564911 0.528214457988136 0.06971675 0.14597556 prediction 0.43812306715355 Functional Loss - HINFP ENSG00000172273 CDS Human protein_coding chr11:119003424 chr11:119003427 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_82599 0 0 1 0 2 HINFP chr11:119003491 5'GT 119003491 Upstream 65bp
chr3 33418781 33418781 1 + C T SKCM 33418779 + 33418759 33418799 41 CCTCAGAATTTTGGAGGCTGCCCGATGCTCCCATTTGACTG CCTCAGAATTTTGGAGGCTGCCTGATGCTCCCATTTGACTG < 41bp 0.719055301147335 0.428124389531101 0.12915277 0.18660933 prediction 0.438110602294671 Functional Loss - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33418779 chr3:33418781 stopgain 0.998 1 23 hm5C_associated_SNPs_82602 0 0 0 0 2 FBXL2 chr3:33418765 3'AG 33418765 Downstream 17bp
chr3 33418781 33418781 1 + C T SKCM 33418779 + 33418759 33418799 41 CCTCAGAATTTTGGAGGCTGCCCGATGCTCCCATTTGACTG CCTCAGAATTTTGGAGGCTGCCTGATGCTCCCATTTGACTG < 41bp 0.719055301147335 0.428124389531101 0.12915277 0.18660933 prediction 0.438110602294671 Functional Loss - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33418779 chr3:33418781 stopgain 0.998 1 23 hm5C_associated_SNPs_82602 0 0 0 0 2 FBXL2 chr3:33418825 5'GT 33418825 Upstream 45bp
chr15 22993121 22993121 1 + C T rs149042952 22993119 + 22993099 22993139 41 AACCTGCGGGAGGTGGGGAACGCCATCCTCTTCTGCCTGCT AACCTGCGGGAGGTGGGGAACGTCATCCTCTTCTGCCTGCT < 41bp 0.852040813989482 0.632992076937878 0.6731267 0.37262964 prediction 0.438097474103209 Functional Loss - CYFIP1 ENSG00000068793 CDS Human other chr15:22993119 chr15:22993121 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_82603 0 0 1 0 1 CYFIP1 chr15:22993025 3'AG 22993025 Downstream 97bp
chr1 214491482 214491482 1 + C T CESC 214491480 + 214491460 214491500 41 AGCTGTGAAGGAGTTTGAATCACGTAAGTCTTTCTGTGACC AGCTGTGAAGGAGTTTGAATCATGTAAGTCTTTCTGTGACC < 41bp 0.719048508402701 0.46085214911962 0.6854478 0.50003916 prediction 0.438097016805401 Functional Loss - SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214491480 chr1:214491482 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_82604 0 0 0 1 2 SMYD2 chr1:214491422 3'AG 214491422 Downstream 61bp
chr1 214491482 214491482 1 + C T CESC 214491480 + 214491460 214491500 41 AGCTGTGAAGGAGTTTGAATCACGTAAGTCTTTCTGTGACC AGCTGTGAAGGAGTTTGAATCATGTAAGTCTTTCTGTGACC < 41bp 0.719048508402701 0.46085214911962 0.6854478 0.50003916 prediction 0.438097016805401 Functional Loss - SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214491480 chr1:214491482 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_82604 0 0 0 1 2 SMYD2 chr1:214491482 5'GT 214491482 Upstream 1bp
chr8 62212800 62212800 1 + G A HNSC 62212797 + 62212777 62212817 41 GAAAACCGAGACCATTACGGCAGGAAGATTCTTTTGCTGTT GAAAACCGAGACCATTACGGCAGAAAGATTCTTTTGCTGTT < 41bp 0.719046081496005 0.487934448547041 0.49862567 0.19675466 prediction 0.43809216299201 Functional Loss - CLVS1 ENSG00000177182 CDS Human protein_coding chr8:62212797 chr8:62212800 synonymous SNV . 0 24 hm5C_associated_SNPs_82607 0 0 0 0 1 CLVS1 chr8:62212841 5'GT 62212841 Upstream 42bp
chr4 74280867 74280867 1 + G A SKCM 74280864 + 74280844 74280884 41 GCTGTGCCGCTGCAGATCCTCATGAATGCTATGCCAAAGTG GCTGTGCCGCTGCAGATCCTCATAAATGCTATGCCAAAGTG < 41bp 0.771719211173986 0.552674641562862 0.14488813 0.078820705 prediction 0.438089139222248 Functional Loss - ALB ENSG00000163631 CDS Human protein_coding chr4:74280864 chr4:74280867 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_82608 0 0 1 0 1 ALB chr4:74280884 5'GT 74280884 Upstream 18bp
chr2 1499831 1499831 1 + C T LUSC 1499829 + 1499809 1499849 41 GCTGGAGAAGCACTCCCTGTCTCGGGTCATCTGTGACAACA GCTGGAGAAGCACTCCCTGTCTTGGGTCATCTGTGACAACA < 41bp 0.842252906689995 0.623215689460003 0.13140327 0.13572335 prediction 0.438074434459984 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1499829 chr2:1499831 nonsynonymous SNV 0.636 4 23 hm5C_associated_SNPs_82610 1 0 0 0 1 TPO chr2:1499761 3'AG 1499761 Downstream 71bp
chr19 55858388 55858388 1 + C T SKCM 55858386 + 55858366 55858406 41 CAGACACCTCACCCCTCTGGCTCCAGTGGCTGCCTCAGCCC CAGACACCTCACCCCTCTGGCTTCAGTGGCTGCCTCAGCCC < 41bp 0.817345158659632 0.598310721840181 0.81765497 0.05538404 prediction 0.438068873638902 Functional Loss - KMT5C ENSG00000133247 CDS Human protein_coding chr19:55858386 chr19:55858388 synonymous SNV . 0 23 hm5C_associated_SNPs_82613 0 0 0 0 1 KMT5C chr19:55858324 3'AG 55858324 Downstream 65bp
chr19 55020262 55020262 1 + G A SKCM 55020259 + 55020239 55020279 41 TTACAGAAAGCTCTGGAGGCCCGGACTCCCCGGACACAGAG TTACAGAAAGCTCTGGAGGCCCGAACTCCCCGGACACAGAG < 41bp 0.774800094815738 0.555766646156363 0.25755042 0.20040601 prediction 0.438066897318751 Functional Loss - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55020259 chr19:55020262 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_82614 0 0 0 0 2 LAIR2 chr19:55020245 3'AG 55020245 Downstream 18bp
chr19 55020262 55020262 1 + G A SKCM 55020259 + 55020239 55020279 41 TTACAGAAAGCTCTGGAGGCCCGGACTCCCCGGACACAGAG TTACAGAAAGCTCTGGAGGCCCGAACTCCCCGGACACAGAG < 41bp 0.774800094815738 0.555766646156363 0.25755042 0.20040601 prediction 0.438066897318751 Functional Loss - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55020259 chr19:55020262 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_82614 0 0 0 0 2 LAIR2 chr19:55020295 5'GT 55020295 Upstream 34bp
chr2 113417287 113417287 1 + C T UCEC 113417284 + 113417264 113417304 41 TCTCTCTCCTCTTCCAGTTCCTGCAGATCCTTACAGCCTGC TCTCTCTCCTCTTCCAGTTCCTGTAGATCCTTACAGCCTGC < 41bp 0.752684964552269 0.533657663589065 0.863932 0.59808683 prediction 0.438054601926408 Functional Loss - SLC20A1 ENSG00000144136 CDS Human protein_coding chr2:113417284 chr2:113417287 stopgain 0.995 1 24 hm5C_associated_SNPs_82619 0 0 1 0 1 SLC20A1 chr2:113417339 5'GT 113417339 Upstream 53bp
chr2 105716152 105716152 1 + G A UCEC 105716149 + 105716129 105716169 41 TGGACTACTTACTACTGATCCACGTGTGAGGGAACGGAAGA TGGACTACTTACTACTGATCCACATGTGAGGGAACGGAAGA < 41bp 0.763381453400367 0.544357117386575 0.14555627 0.027750552 prediction 0.438048672027584 Functional Loss - MRPS9 ENSG00000135972 CDS Human protein_coding chr2:105716149 chr2:105716152 nonsynonymous SNV 0.008 4 24 hm5C_associated_SNPs_82621 0 0 1 0 1 MRPS9 chr2:105716128 3'AG 105716128 Downstream 25bp
chr5 138160274 138160274 1 + A T LUAD 138160270 + 138160250 138160290 41 TGGCTGCAGCTAGAGGAATCCTGCAGAAGAACGTTCCGATC TGGCTGCAGCTAGAGGAATCCTGCTGAAGAACGTTCCGATC < 41bp 0.897894958456419 0.678876182961188 0.37257427 0.34665176 prediction 0.438037550990464 Functional Loss - CTNNA1 ENSG00000044115 CDS Human protein_coding chr5:138160270 chr5:138160274 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_82623 0 0 1 0 1 CTNNA1 chr5:138160219 3'AG 138160219 Downstream 56bp
chr1 28056767 28056767 1 + G A rs1933887 28056764 + 28056744 28056784 41 CTAGAGTGCAATGGCACGATCTCGGCTCACTGCAACCTCCA CTAGAGTGCAATGGCACGATCTCAGCTCACTGCAACCTCCA < 41bp 0.802735067584886 0.58371666845765 0.5007566 0.1819703 prediction 0.438036798254472 Functional Loss - FAM76A ENSG00000009780 CDS Human protein_coding chr1:28056764 chr1:28056767 synonymous SNV . 0 24 hm5C_associated_SNPs_82624 0 0 0 0 2 FAM76A chr1:28056743 3'AG 28056743 Downstream 25bp
chr1 28056767 28056767 1 + G A rs1933887 28056764 + 28056744 28056784 41 CTAGAGTGCAATGGCACGATCTCGGCTCACTGCAACCTCCA CTAGAGTGCAATGGCACGATCTCAGCTCACTGCAACCTCCA < 41bp 0.802735067584886 0.58371666845765 0.5007566 0.1819703 prediction 0.438036798254472 Functional Loss - FAM76A ENSG00000009780 CDS Human protein_coding chr1:28056764 chr1:28056767 synonymous SNV . 0 24 hm5C_associated_SNPs_82624 0 0 0 0 2 FAM76A chr1:28056844 5'GT 28056844 Upstream 78bp
chr5 96232180 96232180 1 + A C CESC 96232176 + 96232156 96232196 41 CGGAAACCCCGACTCAAATACAGGAAATGTTTGATGAAGTT CGGAAACCCCGACTCAAATACAGGCAATGTTTGATGAAGTT < 41bp 0.71901816861725 0.310115517810385 0.32975852 0.37189403 prediction 0.438036337234501 Functional Loss - ERAP2 ENSG00000164308 CDS Human protein_coding chr5:96232176 chr5:96232180 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_82625 0 0 0 0 1 ERAP2 chr5:96232208 5'GT 96232208 Upstream 29bp
chr5 96232179 96232179 1 + G A SKCM 96232176 + 96232156 96232196 41 CGGAAACCCCGACTCAAATACAGGAAATGTTTGATGAAGTT CGGAAACCCCGACTCAAATACAGAAAATGTTTGATGAAGTT < 41bp 0.71901816861725 0.489655074650291 0.32975852 0.1324116 prediction 0.438036337234501 Functional Loss - ERAP2 ENSG00000164308 CDS Human protein_coding chr5:96232176 chr5:96232179 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_82626 0 0 0 0 1 ERAP2 chr5:96232208 5'GT 96232208 Upstream 30bp
chr11 76833082 76833082 1 + G T UCEC 76833079 + 76833059 76833099 41 GTCCTGGGAGCTGCTGGCCTCAAGGACTCCCCAACAGGTGA GTCCTGGGAGCTGCTGGCCTCAATGACTCCCCAACAGGTGA < 41bp 0.719014963708683 0.315492796577681 0.5376536 0.09579426 prediction 0.438029927417366 Functional Loss - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76833079 chr11:76833082 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_82628 0 0 0 0 1 CAPN5 chr11:76833095 5'GT 76833095 Upstream 14bp
chr2 148683671 148683671 1 + G A UCEC 148683668 + 148683648 148683688 41 ATCCATCTCTTGAAGACATGCAGGAAGTTGTTGTGCATAAA ATCCATCTCTTGAAGACATGCAGAAAGTTGTTGTGCATAAA < 41bp 0.742707834080356 0.523693586289528 0.4066331 0.12101591 prediction 0.438028495581655 Functional Loss - ACVR2A ENSG00000121989 CDS Human protein_coding chr2:148683668 chr2:148683671 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_82629 0 0 1 0 2 ACVR2A chr2:148683600 3'AG 148683600 Downstream 72bp
chr2 148683671 148683671 1 + G A UCEC 148683668 + 148683648 148683688 41 ATCCATCTCTTGAAGACATGCAGGAAGTTGTTGTGCATAAA ATCCATCTCTTGAAGACATGCAGAAAGTTGTTGTGCATAAA < 41bp 0.742707834080356 0.523693586289528 0.4066331 0.12101591 prediction 0.438028495581655 Functional Loss - ACVR2A ENSG00000121989 CDS Human protein_coding chr2:148683668 chr2:148683671 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_82629 0 0 1 0 2 ACVR2A chr2:148683730 5'GT 148683730 Upstream 60bp
chr7 100382316 100382316 1 + G A rs149194496 100382313 + 100382293 100382333 41 GCTCACCCTCCTGCTGGGACCTGGATGGCCGGTGTGAGGGC GCTCACCCTCCTGCTGGGACCTGAATGGCCGGTGTGAGGGC < 41bp 0.755473473328503 0.536459235306308 0.32889467 0.27379507 prediction 0.438028476044392 Functional Loss - ZAN ENSG00000146839 CDS Human protein_coding chr7:100382313 chr7:100382316 nonsynonymous SNV 0.180 0 24 hm5C_associated_SNPs_82630 0 0 0 0 1 ZAN chr7:100382245 3'AG 100382245 Downstream 72bp
chr11 62532865 62532865 1 + G A LUAD 62532862 + 62532842 62532882 41 AACTCCAACCCACCATGTTACAAGACAATGGATGAGGTGAG AACTCCAACCCACCATGTTACAAAACAATGGATGAGGTGAG < 41bp 0.767918864351079 0.548907188876296 0.15266687 0.14173087 prediction 0.438023350949568 Functional Loss - POLR2G ENSG00000168002 CDS Human protein_coding chr11:62532862 chr11:62532865 synonymous SNV . 0 24 hm5C_associated_SNPs_82631 0 0 1 1 2 POLR2G chr11:62532812 3'AG 62532812 Downstream 54bp
chr11 62532865 62532865 1 + G A LUAD 62532862 + 62532842 62532882 41 AACTCCAACCCACCATGTTACAAGACAATGGATGAGGTGAG AACTCCAACCCACCATGTTACAAAACAATGGATGAGGTGAG < 41bp 0.767918864351079 0.548907188876296 0.15266687 0.14173087 prediction 0.438023350949568 Functional Loss - POLR2G ENSG00000168002 CDS Human protein_coding chr11:62532862 chr11:62532865 synonymous SNV . 0 24 hm5C_associated_SNPs_82631 0 0 1 1 2 POLR2G chr11:62532877 5'GT 62532877 Upstream 13bp
chr19 15795890 15795890 1 + C T GBM 15795888 + 15795868 15795908 41 TGCTCCTCAGGCCATGACACCACGGCCAGTGGCCTCTCCTG TGCTCCTCAGGCCATGACACCATGGCCAGTGGCCTCTCCTG < 41bp 0.826557315447178 0.607545906354374 0.90709025 0.83753324 prediction 0.438022818185608 Functional Loss - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15795888 chr19:15795890 nonsynonymous SNV 0.304 3 23 hm5C_associated_SNPs_82632 0 0 1 0 1 CYP4F12 chr19:15795878 3'AG 15795878 Downstream 13bp
chr3 122296675 122296675 1 + C T BRCA 122296673 + 122296653 122296693 41 AACCGTGGGGCGCGGAAGGCCTCCCGGCGCTCTTCCTCCCG AACCGTGGGGCGCGGAAGGCCTTCCGGCGCTCTTCCTCCCG < 41bp 0.781975038416265 0.562966322214972 0.47655874 0.38683766 prediction 0.438017432402587 Functional Loss - PARP15 ENSG00000173200 CDS Human protein_coding chr3:122296673 chr3:122296675 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_82634 0 0 0 0 1 PARP15 chr3:122296700 5'GT 122296700 Upstream 26bp
chr1 155014254 155014254 1 + G A BLCA 155014251 + 155014231 155014271 41 GACCGCAAGCATGAACAGTGCATGAAGCACATCTGGGTCCC GACCGCAAGCATGAACAGTGCATAAAGCACATCTGGGTCCC < 41bp 0.719008524794652 0.470234757392969 0.1515925 0.09660229 prediction 0.438017049589303 Functional Loss - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155014251 chr1:155014254 nonsynonymous SNV 0.445 1 24 hm5C_associated_SNPs_82635 0 0 0 0 1 DCST1 chr1:155014190 3'AG 155014190 Downstream 65bp
chr13 113536285 113536285 1 + G A rs9603797 113536282 + 113536262 113536302 41 GCCTGGAAGGAGAAGGTGTCCACGGAGCCCCCACCCATCCT GCCTGGAAGGAGAAGGTGTCCACAGAGCCCCCACCCATCCT < 41bp 0.785088813332523 0.566080716445788 0.40813553 0.2785328 prediction 0.438016193773471 Functional Loss - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113536282 chr13:113536285 synonymous SNV . 0 24 hm5C_associated_SNPs_82637 0 0 1 0 1 ATP11A chr13:113536190 3'AG 113536190 Downstream 96bp
chr1 1414077 1414077 1 + T C UCEC 1414076 + 1414056 1414096 41 CGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCC CGAGCAGATCCGGGCGCAGGCCGAGGAGAGGAGGAAGACCC < 41bp 0.748697060230422 0.529692745979782 0.56698215 0.84494424 prediction 0.438008628501281 Functional Loss - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1414076 chr1:1414077 synonymous SNV . 0 22 hm5C_associated_SNPs_82638 0 0 0 0 2 ATAD3B chr1:1414024 3'AG 1414024 Downstream 54bp
chr1 1414077 1414077 1 + T C UCEC 1414076 + 1414056 1414096 41 CGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCC CGAGCAGATCCGGGCGCAGGCCGAGGAGAGGAGGAAGACCC < 41bp 0.748697060230422 0.529692745979782 0.56698215 0.84494424 prediction 0.438008628501281 Functional Loss - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1414076 chr1:1414077 synonymous SNV . 0 22 hm5C_associated_SNPs_82638 0 0 0 0 2 ATAD3B chr1:1414125 5'GT 1414125 Upstream 49bp
chr1 171252334 171252334 1 + G A SKCM 171252331 + 171252311 171252351 41 CATGATAGAGGAAATTAATGCAAGGAAAGAAAACAAGCCCA CATGATAGAGGAAATTAATGCAAAGAAAGAAAACAAGCCCA < 41bp 0.71900332816184 0.485850365080021 0.32920963 0.05704391 prediction 0.438006656323679 Functional Loss - FMO1 ENSG00000010932 CDS Human protein_coding chr1:171252331 chr1:171252334 nonsynonymous SNV 0.203 0 24 hm5C_associated_SNPs_82640 0 0 0 0 2 FMO1 chr1:171252283 3'AG 171252283 Downstream 52bp
chr1 171252334 171252334 1 + G A SKCM 171252331 + 171252311 171252351 41 CATGATAGAGGAAATTAATGCAAGGAAAGAAAACAAGCCCA CATGATAGAGGAAATTAATGCAAAGAAAGAAAACAAGCCCA < 41bp 0.71900332816184 0.485850365080021 0.32920963 0.05704391 prediction 0.438006656323679 Functional Loss - FMO1 ENSG00000010932 CDS Human protein_coding chr1:171252331 chr1:171252334 nonsynonymous SNV 0.203 0 24 hm5C_associated_SNPs_82640 0 0 0 0 2 FMO1 chr1:171252355 5'GT 171252355 Upstream 22bp
chr2 125204447 125204447 1 + C T UCEC 125204445 + 125204425 125204465 41 GTGGGCAAGCAGGTGAACTTCACGGTGGACAAGCACACACA GTGGGCAAGCAGGTGAACTTCATGGTGGACAAGCACACACA < 41bp 0.723624698455427 0.504623299750093 0.9092929 0.8956061 prediction 0.438002797410668 Functional Loss - CNTNAP5 ENSG00000155052 CDS Human protein_coding chr2:125204445 chr2:125204447 nonsynonymous SNV 0.934 3 23 hm5C_associated_SNPs_82643 0 0 0 0 1 CNTNAP5 chr2:125204514 5'GT 125204514 Upstream 68bp
chr2 73118517 73118517 1 + T C OV 73118516 + 73118496 73118536 41 CAGCAGTTGGCCCGGGAGACCTCCGTGGACCCAGACATGCG CAGCAGTTGGCCCGGGAGACCCCCGTGGACCCAGACATGCG < 41bp 0.718998095444489 0.464887792358916 0.35733196 0.20463535 prediction 0.437996190888977 Functional Loss - SPR ENSG00000116096 CDS Human protein_coding chr2:73118516 chr2:73118517 nonsynonymous SNV 0.701 2 22 hm5C_associated_SNPs_82645 0 0 1 0 1 SPR chr2:73118476 3'AG 73118476 Downstream 42bp
chr2 63824576 63824576 1 + G T UCEC 63824574 + 63824554 63824594 41 AAGACGTTGCCTTCAAAGACCTGGATGTGGCCATTCTTGTG AAGACGTTGCCTTCAAAGACCTTGATGTGGCCATTCTTGTG < 41bp 0.900295577897472 0.681300008942012 0.23881605 0.06362519 prediction 0.437991137910919 Functional Loss - MDH1 ENSG00000014641 CDS Human protein_coding chr2:63824574 chr2:63824576 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_82646 0 0 1 0 1 MDH1 chr2:63824533 3'AG 63824533 Downstream 44bp
chr6 33048461 33048461 1 - T A rs1126509 33048465 - 33048445 33048485 41 GCGTAGCATTCCTGCCGTCCCTGGAAAAGGTAATTCTCTGC GCGTAGCATTCCTGCCGTCCCTGGTAAAGGTAATTCTCTGC < 41bp 0.775880246499607 0.556887574744691 0.26423058 0.17034 prediction 0.437985343509832 Functional Loss - HLA-DPB1 ENSG00000223865 CDS Human protein_coding chr6:33048465 chr6:33048461 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_82648 0 0 0 0 1 HLA-DPB1 chr6:33048457 5'GT 33048457 Upstream 5bp
chr11 15212305 15212305 1 + G A LUAD 15212302 + 15212282 15212322 41 CTACACCACAGAGTCCACCACAGGGAACCTGTTCAGCCTGA CTACACCACAGAGTCCACCACAGAGAACCTGTTCAGCCTGA < 41bp 0.789031521327836 0.570039872624282 0.7965671 0.33684492 prediction 0.437983297407108 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15212302 chr11:15212305 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_82649 0 0 0 0 2 INSC chr11:15212247 3'AG 15212247 Downstream 59bp
chr11 15212305 15212305 1 + G A LUAD 15212302 + 15212282 15212322 41 CTACACCACAGAGTCCACCACAGGGAACCTGTTCAGCCTGA CTACACCACAGAGTCCACCACAGAGAACCTGTTCAGCCTGA < 41bp 0.789031521327836 0.570039872624282 0.7965671 0.33684492 prediction 0.437983297407108 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15212302 chr11:15212305 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_82649 0 0 0 0 2 INSC chr11:15212360 5'GT 15212360 Upstream 56bp
chr2 71211830 71211830 1 + G A UCEC 71211827 + 71211807 71211847 41 CACTCTCTGGTCTCCAATACCAAGCAAGCCCGGGCCACCGC CACTCTCTGGTCTCCAATACCAAACAAGCCCGGGCCACCGC < 41bp 0.800168325692011 0.581176952432305 0.62192035 0.2685653 prediction 0.437982746519413 Functional Loss - ANKRD53 ENSG00000144031 CDS Human protein_coding chr2:71211827 chr2:71211830 synonymous SNV . 0 24 hm5C_associated_SNPs_82650 0 0 0 0 1 ANKRD53 chr2:71211741 3'AG 71211741 Downstream 90bp
chr2 39944346 39944346 1 + G A SKCM 39944343 + 39944323 39944363 41 ATCGCTTATCCGTTTATTAGCCGGACCAAGATTGCACAGCT ATCGCTTATCCGTTTATTAGCCGAACCAAGATTGCACAGCT < 41bp 0.766373409052746 0.547385614397261 0.5611459 0.521011 prediction 0.43797558931097 Functional Loss - TMEM178A ENSG00000152154 CDS Human protein_coding chr2:39944343 chr2:39944346 synonymous SNV . 0 24 hm5C_associated_SNPs_82651 0 0 0 0 1 TMEM178A chr2:39944408 5'GT 39944408 Upstream 63bp
chr2 73452826 73452826 1 + T C STAD 73452825 + 73452805 73452845 41 GCCACAGCCGCCACAAGATCCTCAGGTGCCAGCTGGGGACA GCCACAGCCGCCACAAGATCCCCAGGTGCCAGCTGGGGACA < 41bp 0.7189812872619 0.45329578847995 0.101220906 0.14965776 prediction 0.437962574523801 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73452825 chr2:73452826 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_82655 0 0 1 2 2 SMYD5 chr2:73452759 3'AG 73452759 Downstream 68bp
chr2 73452826 73452826 1 + T C STAD 73452825 + 73452805 73452845 41 GCCACAGCCGCCACAAGATCCTCAGGTGCCAGCTGGGGACA GCCACAGCCGCCACAAGATCCCCAGGTGCCAGCTGGGGACA < 41bp 0.7189812872619 0.45329578847995 0.101220906 0.14965776 prediction 0.437962574523801 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73452825 chr2:73452826 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_82655 0 0 1 2 2 SMYD5 chr2:73452829 5'GT 73452829 Upstream 4bp
chr7 76058924 76058924 1 + G C LUAD 76058920 + 76058900 76058940 41 CATCGTGAGGACTAACCGCGCAGAGATTCCCATCGAGTGCC CATCGTGAGGACTAACCGCGCAGACATTCCCATCGAGTGCC < 41bp 0.718969398854316 0.414753504600933 0.35952654 0.09797296 prediction 0.437938797708633 Functional Loss - ZP3 ENSG00000188372 CDS Human protein_coding chr7:76058920 chr7:76058924 nonsynonymous SNV 0.020 1 25 hm5C_associated_SNPs_82660 0 0 1 0 2 ZP3 chr7:76058832 3'AG 76058832 Downstream 93bp
chr7 76058924 76058924 1 + G C LUAD 76058920 + 76058900 76058940 41 CATCGTGAGGACTAACCGCGCAGAGATTCCCATCGAGTGCC CATCGTGAGGACTAACCGCGCAGACATTCCCATCGAGTGCC < 41bp 0.718969398854316 0.414753504600933 0.35952654 0.09797296 prediction 0.437938797708633 Functional Loss - ZP3 ENSG00000188372 CDS Human protein_coding chr7:76058920 chr7:76058924 nonsynonymous SNV 0.020 1 25 hm5C_associated_SNPs_82660 0 0 1 0 2 ZP3 chr7:76058950 5'GT 76058950 Upstream 27bp
chr19 43920565 43920565 1 + G A rs60313023 43920562 + 43920542 43920582 41 TTGGCCACGAAGGGCTGCATCCCGGAAGGGGAGGAGGCCAT TTGGCCACGAAGGGCTGCATCCCAGAAGGGGAGGAGGCCAT < 41bp 0.718969287155993 0.477097610018731 0.082105756 0.027466059 prediction 0.437938574311987 Functional Loss - TEX101 ENSG00000131126 CDS Human protein_coding chr19:43920562 chr19:43920565 synonymous SNV . 0 24 hm5C_associated_SNPs_82661 0 0 0 0 1 TEX101 chr19:43920525 3'AG 43920525 Downstream 41bp
chr19 43920564 43920564 1 + C T ESCA 43920562 + 43920542 43920582 41 TTGGCCACGAAGGGCTGCATCCCGGAAGGGGAGGAGGCCAT TTGGCCACGAAGGGCTGCATCCTGGAAGGGGAGGAGGCCAT < 41bp 0.718969287155993 0.444452951312292 0.082105756 0.07069364 prediction 0.437938574311987 Functional Loss - TEX101 ENSG00000131126 CDS Human protein_coding chr19:43920562 chr19:43920564 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_82662 0 0 0 0 1 TEX101 chr19:43920525 3'AG 43920525 Downstream 40bp
chr3 49017843 49017843 1 + G A STAD 49017840 + 49017820 49017860 41 CACAGACATACCAGCGGATTCACGAGAAGATTCAGGAGAGG CACAGACATACCAGCGGATTCACAAGAAGATTCAGGAGAGG < 41bp 0.748073541449154 0.529116425240479 0.21052378 0.102339715 prediction 0.437914232417349 Functional Loss - ARIH2 ENSG00000177479 CDS Human protein_coding chr3:49017840 chr3:49017843 nonsynonymous SNV 0.982 4 24 hm5C_associated_SNPs_82667 0 0 1 0 2 ARIH2 chr3:49017786 3'AG 49017786 Downstream 58bp
chr3 49017843 49017843 1 + G A STAD 49017840 + 49017820 49017860 41 CACAGACATACCAGCGGATTCACGAGAAGATTCAGGAGAGG CACAGACATACCAGCGGATTCACAAGAAGATTCAGGAGAGG < 41bp 0.748073541449154 0.529116425240479 0.21052378 0.102339715 prediction 0.437914232417349 Functional Loss - ARIH2 ENSG00000177479 CDS Human protein_coding chr3:49017840 chr3:49017843 nonsynonymous SNV 0.982 4 24 hm5C_associated_SNPs_82667 0 0 1 0 2 ARIH2 chr3:49017929 5'GT 49017929 Upstream 87bp
chr19 41263302 41263302 1 + C T COAD 41263300 + 41263280 41263320 41 GATCCTGGATATCCTGGTATCACGGAGCCTGAAGATGAGGG GATCCTGGATATCCTGGTATCATGGAGCCTGAAGATGAGGG < 41bp 0.829302567193487 0.610348776473212 0.8683723 0.7186543 prediction 0.437907581440551 Functional Loss - SNRPA ENSG00000077312 CDS Human protein_coding chr19:41263300 chr19:41263302 nonsynonymous SNV 0.925 3 23 hm5C_associated_SNPs_82672 0 0 1 0 1 SNRPA chr19:41263237 3'AG 41263237 Downstream 66bp
chr20 32358031 32358031 1 + G A COAD 32358028 + 32358008 32358048 41 ACTTCCCCTCGCTGTACGACCTGGGCGTGCACCAGTACTCC ACTTCCCCTCGCTGTACGACCTGAGCGTGCACCAGTACTCC < 41bp 0.814623701738205 0.595673085500451 0.42787668 0.26434597 prediction 0.437901232475507 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32358028 chr20:32358031 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_82675 0 0 0 0 1 ZNF341 chr20:32358098 5'GT 32358098 Upstream 68bp
chrX 23945476 23945476 1 + G T COAD 23945473 + 23945453 23945493 41 TAATGGATGTTGTCACCATGCAAGATTATGTACAAGTAAGG TAATGGATGTTGTCACCATGCAATATTATGTACAAGTAAGG < 41bp 0.718950358060785 0.348598981153483 0.11225942 0.08200204 prediction 0.43790071612157 Functional Loss - CXorf58 ENSG00000165182 CDS Human protein_coding chrX:23945473 chrX:23945476 nonsynonymous SNV 0.977 4 24 hm5C_associated_SNPs_82676 0 0 0 0 1 CXorf58 chrX:23945487 5'GT 23945487 Upstream 12bp
chr2 179201135 179201135 1 + G A ESCA 179201132 + 179201112 179201152 41 GTGGCAGCCTGGTTACAGGACTCGGAAGAGATGGACAGGTG GTGGCAGCCTGGTTACAGGACTCAGAAGAGATGGACAGGTG < 41bp 0.718949421260549 0.48715525258621 0.12388563 0.15795302 prediction 0.437898842521098 Functional Loss - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179201132 chr2:179201135 synonymous SNV . 0 24 hm5C_associated_SNPs_82677 0 0 1 0 1 OSBPL6 chr2:179201160 5'GT 179201160 Upstream 26bp
chr16 55360493 55360493 1 + G T rs79122224 55360491 + 55360471 55360511 41 ATAGCCCAGAGCCCCCCTCACTGTATGGGGCACTGGTGAGT ATAGCCCAGAGCCCCCCTCACTTTATGGGGCACTGGTGAGT < 41bp 0.71894852437733 0.366718799611522 0.71609986 0.40312952 prediction 0.437897048754659 Functional Loss - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55360491 chr16:55360493 synonymous SNV . 0 23 hm5C_associated_SNPs_82678 0 0 0 0 1 IRX6 chr16:55360505 5'GT 55360505 Upstream 13bp
chr19 38795209 38795209 1 + C T HNSC 38795207 + 38795187 38795227 41 CCCAGGGTCCTGCCTTAGGCCTCCAACTTCAGGGGGCTGGG CCCAGGGTCCTGCCTTAGGCCTTCAACTTCAGGGGGCTGGG < 41bp 0.826107756097686 0.607162142428466 0.9444974 0.46169183 prediction 0.43789122733844 Functional Loss - C19orf33 ENSG00000167644;ENSG00000267748 CDS Human other chr19:38795207 chr19:38795209 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_82683 0 0 0 0 1 C19orf33 chr19:38795205 3'AG 38795205 Downstream 5bp
chr11 64878039 64878039 1 + G T UCEC 64878036 + 64878016 64878056 41 TTTCTCCGTGTACAGCAGCTCTCGGCAGCAGGGCCGCTACG TTTCTCCGTGTACAGCAGCTCTCTGCAGCAGGGCCGCTACG < 41bp 0.718944255185802 0.321488070810972 0.39173895 0.14591306 prediction 0.437888510371603 Functional Loss - VPS51 ENSG00000149823 CDS Human protein_coding chr11:64878036 chr11:64878039 nonsynonymous SNV 0.969 2 24 hm5C_associated_SNPs_82684 0 0 1 0 2 VPS51 chr11:64877954 3'AG 64877954 Downstream 86bp
chr11 64878039 64878039 1 + G T UCEC 64878036 + 64878016 64878056 41 TTTCTCCGTGTACAGCAGCTCTCGGCAGCAGGGCCGCTACG TTTCTCCGTGTACAGCAGCTCTCTGCAGCAGGGCCGCTACG < 41bp 0.718944255185802 0.321488070810972 0.39173895 0.14591306 prediction 0.437888510371603 Functional Loss - VPS51 ENSG00000149823 CDS Human protein_coding chr11:64878036 chr11:64878039 nonsynonymous SNV 0.969 2 24 hm5C_associated_SNPs_82684 0 0 1 0 2 VPS51 chr11:64878075 5'GT 64878075 Upstream 37bp
chr1 186946838 186946838 1 + G A UCEC 186946835 + 186946815 186946855 41 GAGTGCTATGTCTTTAAACCCAAGAATCCTGATATGGAGAA GAGTGCTATGTCTTTAAACCCAAAAATCCTGATATGGAGAA < 41bp 0.74805537924714 0.52911583737417 0.78387415 0.81059474 prediction 0.43787908374594 Functional Loss - PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186946835 chr1:186946838 synonymous SNV . 0 24 hm5C_associated_SNPs_82685 0 0 0 0 1 PLA2G4A chr1:186946920 5'GT 186946920 Upstream 83bp
chr20 42264573 42264573 1 + G A rs145672738 42264570 + 42264550 42264590 41 TTGATTATGAACACAGGGCTCACGAGCAGCTAAATGTGAAA TTGATTATGAACACAGGGCTCACAAGCAGCTAAATGTGAAA < 41bp 0.748708363852977 0.52976915027511 0.061805725 0.0049910545 prediction 0.437878427155734 Functional Loss - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42264570 chr20:42264573 nonsynonymous SNV 0.950 1 24 hm5C_associated_SNPs_82686 0 0 1 2 2 IFT52 chr20:42264566 3'AG 42264566 Downstream 8bp
chr20 42264573 42264573 1 + G A rs145672738 42264570 + 42264550 42264590 41 TTGATTATGAACACAGGGCTCACGAGCAGCTAAATGTGAAA TTGATTATGAACACAGGGCTCACAAGCAGCTAAATGTGAAA < 41bp 0.748708363852977 0.52976915027511 0.061805725 0.0049910545 prediction 0.437878427155734 Functional Loss - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42264570 chr20:42264573 nonsynonymous SNV 0.950 1 24 hm5C_associated_SNPs_82686 0 0 1 2 2 IFT52 chr20:42264653 5'GT 42264653 Upstream 81bp
chr2 108622654 108622654 1 + A C OV 108622653 + 108622633 108622673 41 CATTGGGGCCATTGGAGCATCAACAGGTAAATCTCTTGCAG CATTGGGGCCATTGGAGCATCCACAGGTAAATCTCTTGCAG < 41bp 0.814937226019533 0.595999947327335 0.11732614 0.14756536 prediction 0.437874557384397 Functional Loss - SLC5A7 ENSG00000115665 CDS Human protein_coding chr2:108622653 chr2:108622654 synonymous SNV . 0 22 hm5C_associated_SNPs_82689 0 0 0 0 1 SLC5A7 chr2:108622658 5'GT 108622658 Upstream 5bp
chr3 127981042 127981042 1 + C T SARC 127981039 + 127981019 127981059 41 AGAGGCCCCCGAAACTGAAGCTCCACAGGGCATTCCAGAGC AGAGGCCCCCGAAACTGAAGCTCTACAGGGCATTCCAGAGC < 41bp 0.733301021212456 0.514365272924244 0.91476333 0.9279039 prediction 0.437871496576423 Functional Loss - EEFSEC ENSG00000132394 CDS Human protein_coding chr3:127981039 chr3:127981042 nonsynonymous SNV 0.986 2 24 hm5C_associated_SNPs_82693 0 0 1 0 2 EEFSEC chr3:127980971 3'AG 127980971 Downstream 72bp
chr3 127981042 127981042 1 + C T SARC 127981039 + 127981019 127981059 41 AGAGGCCCCCGAAACTGAAGCTCCACAGGGCATTCCAGAGC AGAGGCCCCCGAAACTGAAGCTCTACAGGGCATTCCAGAGC < 41bp 0.733301021212456 0.514365272924244 0.91476333 0.9279039 prediction 0.437871496576423 Functional Loss - EEFSEC ENSG00000132394 CDS Human protein_coding chr3:127981039 chr3:127981042 nonsynonymous SNV 0.986 2 24 hm5C_associated_SNPs_82693 0 0 1 0 2 EEFSEC chr3:127981067 5'GT 127981067 Upstream 26bp
chr19 50881461 50881461 1 + G A COAD 50881458 + 50881438 50881478 41 AAGCGAAAGAAGGGCCCAGCCCCGAAGATGCTGGGCCACGA AAGCGAAAGAAGGGCCCAGCCCCAAAGATGCTGGGCCACGA < 41bp 0.767574143199235 0.548638626282825 0.42572486 0.39783573 prediction 0.43787103383282 Functional Loss - NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50881458 chr19:50881461 synonymous SNV . 0 24 hm5C_associated_SNPs_82694 0 0 1 0 1 NR1H2 chr19:50881406 3'AG 50881406 Downstream 56bp
chr19 47883232 47883232 1 + C T COAD 47883230 + 47883210 47883250 41 AGCAAGGAACTCCTGCAATTCACGGCATCCAAGGTACCCTC AGCAAGGAACTCCTGCAATTCATGGCATCCAAGGTACCCTC < 41bp 0.812971732109143 0.594048830158338 0.1261147 0.08772257 prediction 0.43784580390161 Functional Loss - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47883230 chr19:47883232 nonsynonymous SNV 0.024 0 23 hm5C_associated_SNPs_82701 0 0 1 0 1 DHX34 chr19:47883242 5'GT 47883242 Upstream 11bp
chr5 173152 173152 1 + C T UCEC 173150 + 173130 173170 41 CCCAGAAGGTGGAGGGCAGCCACGACGTCTACCTGTACAAG CCCAGAAGGTGGAGGGCAGCCATGACGTCTACCTGTACAAG < 41bp 0.718920337616466 0.435997388491352 0.10774413 0.13633835 prediction 0.437840675232933 Functional Loss - PLEKHG4B ENSG00000153404 CDS Human protein_coding chr5:173150 chr5:173152 synonymous SNV . 0 23 hm5C_associated_SNPs_82703 0 0 0 0 1 PLEKHG4B chr5:173182 5'GT 173182 Upstream 31bp
chr11 57114074 57114074 1 + C T UCEC 57114072 + 57114052 57114092 41 CGGGACACAGCCATTGAGTCCTCGGTGGTAACCAAGGTGAA CGGGACACAGCCATTGAGTCCTTGGTGGTAACCAAGGTGAA < 41bp 0.718918404508383 0.4288919894458 0.20518667 0.1691356 prediction 0.437836809016766 Functional Loss - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57114072 chr11:57114074 nonsynonymous SNV 0.619 4 23 hm5C_associated_SNPs_82704 0 0 0 0 2 P2RX3 chr11:57114018 3'AG 57114018 Downstream 57bp
chr11 57114074 57114074 1 + C T UCEC 57114072 + 57114052 57114092 41 CGGGACACAGCCATTGAGTCCTCGGTGGTAACCAAGGTGAA CGGGACACAGCCATTGAGTCCTTGGTGGTAACCAAGGTGAA < 41bp 0.718918404508383 0.4288919894458 0.20518667 0.1691356 prediction 0.437836809016766 Functional Loss - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57114072 chr11:57114074 nonsynonymous SNV 0.619 4 23 hm5C_associated_SNPs_82704 0 0 0 0 2 P2RX3 chr11:57114153 5'GT 57114153 Upstream 80bp
chr1 86913265 86913265 1 + C T rs2275001 86913263 + 86913243 86913283 41 TGAAAGTGACAGTGACCTCTCGCGCCTCCAACTCAGCTGTG TGAAAGTGACAGTGACCTCTCGTGCCTCCAACTCAGCTGTG < 41bp 0.718916045136932 0.443507942271409 0.24493968 0.23948193 prediction 0.437832090273863 Functional Loss - CLCA2 ENSG00000137975 CDS Human protein_coding chr1:86913263 chr1:86913265 synonymous SNV . 0 23 hm5C_associated_SNPs_82705 0 0 0 0 1 CLCA2 chr1:86913191 3'AG 86913191 Downstream 75bp
chr1 86913266 86913266 1 + G A UCEC 86913263 + 86913243 86913283 41 TGAAAGTGACAGTGACCTCTCGCGCCTCCAACTCAGCTGTG TGAAAGTGACAGTGACCTCTCGCACCTCCAACTCAGCTGTG < 41bp 0.718916045136932 0.475343716410056 0.24493968 0.0848749 prediction 0.437832090273863 Functional Loss - CLCA2 ENSG00000137975 CDS Human protein_coding chr1:86913263 chr1:86913266 nonsynonymous SNV 0.475 4 24 hm5C_associated_SNPs_82706 0 0 0 0 1 CLCA2 chr1:86913191 3'AG 86913191 Downstream 76bp
chr19 39114783 39114783 1 + C T LUSC 39114780 + 39114760 39114800 41 CAGATCCTGCTGAAGGCCCTCACCAACTTGCCGCACACAGA CAGATCCTGCTGAAGGCCCTCACTAACTTGCCGCACACAGA < 41bp 0.734549059877386 0.515633361721178 0.027125686 0.019913465 prediction 0.437831396312417 Functional Loss - EIF3K ENSG00000178982 CDS Human protein_coding chr19:39114780 chr19:39114783 synonymous SNV . 0 24 hm5C_associated_SNPs_82707 0 0 1 0 2 EIF3K chr19:39114717 3'AG 39114717 Downstream 67bp
chr19 39114783 39114783 1 + C T LUSC 39114780 + 39114760 39114800 41 CAGATCCTGCTGAAGGCCCTCACCAACTTGCCGCACACAGA CAGATCCTGCTGAAGGCCCTCACTAACTTGCCGCACACAGA < 41bp 0.734549059877386 0.515633361721178 0.027125686 0.019913465 prediction 0.437831396312417 Functional Loss - EIF3K ENSG00000178982 CDS Human protein_coding chr19:39114780 chr19:39114783 synonymous SNV . 0 24 hm5C_associated_SNPs_82707 0 0 1 0 2 EIF3K chr19:39114837 5'GT 39114837 Upstream 55bp
chr5 145638042 145638042 1 + C T SKCM 145638039 + 145638019 145638059 41 CATTGTGATCCAGACTGAACCACCAGTTCCTGTTTCGATTA CATTGTGATCCAGACTGAACCACTAGTTCCTGTTTCGATTA < 41bp 0.747173345837164 0.528264889477552 0.20556623 0.2272301 prediction 0.437816912719225 Functional Loss - RBM27 ENSG00000091009 CDS Human protein_coding chr5:145638039 chr5:145638042 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_82710 0 0 1 0 1 RBM27 chr5:145638012 3'AG 145638012 Downstream 31bp
chr19 50905529 50905529 1 + C T PRAD 50905527 + 50905507 50905547 41 TCACCGTGGCGCTGCCGCGCCTCGTGGCCCCGGCCCGCCGT TCACCGTGGCGCTGCCGCGCCTTGTGGCCCCGGCCCGCCGT < 41bp 0.8215812856984 0.602676005646228 0.39731863 0.3100738 prediction 0.437810560104344 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905527 chr19:50905529 synonymous SNV . 0 23 hm5C_associated_SNPs_82713 0 0 1 0 1 POLD1 chr19:50905462 3'AG 50905462 Downstream 68bp
chrX 76711816 76711816 1 + T C UCEC 76711815 + 76711795 76711835 41 CGGGAACAGTTTGAAGAAAACTGGTACAACACCTATGCCTC CGGGAACAGTTTGAAGAAAACCGGTACAACACCTATGCCTC < 41bp 0.766469355113166 0.547567987031274 0.54189277 0.91512513 prediction 0.437802736163785 Functional Loss - FGF16 ENSG00000196468 CDS Human protein_coding chrX:76711815 chrX:76711816 unknown 1.000 1 22 hm5C_associated_SNPs_82714 0 0 0 0 1 FGF16 chrX:76711768 3'AG 76711768 Downstream 49bp
chr11 125778343 125778343 1 + C T UCEC 125778340 + 125778320 125778360 41 CCAGTCTGGAACAGGAAAGACAGCGGCATTTGTGTTGGCAA CCAGTCTGGAACAGGAAAGACAGTGGCATTTGTGTTGGCAA < 41bp 0.723068438803484 0.504168554947964 0.32786143 0.15663502 prediction 0.437799767711039 Functional Loss - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125778340 chr11:125778343 nonsynonymous SNV 0.961 4 24 hm5C_associated_SNPs_82715 0 0 0 0 2 DDX25 chr11:125778296 3'AG 125778296 Downstream 48bp
chr11 125778343 125778343 1 + C T UCEC 125778340 + 125778320 125778360 41 CCAGTCTGGAACAGGAAAGACAGCGGCATTTGTGTTGGCAA CCAGTCTGGAACAGGAAAGACAGTGGCATTTGTGTTGGCAA < 41bp 0.723068438803484 0.504168554947964 0.32786143 0.15663502 prediction 0.437799767711039 Functional Loss - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125778340 chr11:125778343 nonsynonymous SNV 0.961 4 24 hm5C_associated_SNPs_82715 0 0 0 0 2 DDX25 chr11:125778398 5'GT 125778398 Upstream 56bp
chr12 110181989 110181989 1 + G A UCEC 110181986 + 110181966 110182006 41 GCAGAGGACCCAGAACGCCCCGGGCCAACACCTGGCCTGCC GCAGAGGACCCAGAACGCCCCGGACCAACACCTGGCCTGCC < 41bp 0.718898585211587 0.473372817695698 0.91374147 0.8766583 prediction 0.437797170423174 Functional Loss - FAM222A ENSG00000139438 CDS Human antisense chr12:110181986 chr12:110181989 nonsynonymous SNV 0.841 0 24 hm5C_associated_SNPs_82716 0 0 0 0 1 FAM222A-AS1 chr12:110181906 3'AG 110181906 Downstream 84bp
chr19 41822663 41822663 1 + C T STAD 41822661 + 41822641 41822681 41 CTTCTACTGTGCTGAGGTGGCCCGGCAGGGCACTGCCCGGC CTTCTACTGTGCTGAGGTGGCCTGGCAGGGCACTGCCCGGC < 41bp 0.718895404208927 0.460594757872794 0.120785624 0.20860875 prediction 0.437790808417855 Functional Loss - CCDC97 ENSG00000142039 CDS Human protein_coding chr19:41822661 chr19:41822663 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_82720 0 0 1 0 1 CCDC97 chr19:41822744 5'GT 41822744 Upstream 82bp
chr16 69689567 69689567 1 + G T LIHC 69689564 + 69689544 69689584 41 AGTGTTTGTGGGCAACGACTCTGGACGAGTGAAACCACATG AGTGTTTGTGGGCAACGACTCTGTACGAGTGAAACCACATG < 41bp 0.71889275959424 0.348015319087354 0.32357395 0.13109368 prediction 0.437785519188481 Functional Loss - NFAT5 ENSG00000102908 CDS Human protein_coding chr16:69689564 chr16:69689567 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_82722 0 0 1 0 1 NFAT5 chr16:69689512 3'AG 69689512 Downstream 56bp
chr5 38409153 38409153 1 + C T LIHC 38409151 + 38409131 38409171 41 TCTACTGTGGGGAGAACGAACACGGGAGGGGGGATTTCATG TCTACTGTGGGGAGAACGAACATGGGAGGGGGGATTTCATG < 41bp 0.829339890982676 0.610455160589106 0.91151226 0.9139117 prediction 0.43776946078714 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38409151 chr5:38409153 synonymous SNV . 0 23 hm5C_associated_SNPs_82727 0 0 0 0 2 EGFLAM chr5:38409106 3'AG 38409106 Downstream 48bp
chr5 38409153 38409153 1 + C T LIHC 38409151 + 38409131 38409171 41 TCTACTGTGGGGAGAACGAACACGGGAGGGGGGATTTCATG TCTACTGTGGGGAGAACGAACATGGGAGGGGGGATTTCATG < 41bp 0.829339890982676 0.610455160589106 0.91151226 0.9139117 prediction 0.43776946078714 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38409151 chr5:38409153 synonymous SNV . 0 23 hm5C_associated_SNPs_82727 0 0 0 0 2 EGFLAM chr5:38409206 5'GT 38409206 Upstream 54bp
chr10 20568676 20568676 1 + T C rs143290115 20568675 + 20568655 20568695 41 GATGAAGTTTAGAAGAGGCTCTGGACATCCTGCCTATGCTG GATGAAGTTTAGAAGAGGCTCCGGACATCCTGCCTATGCTG < 41bp 0.75675853738924 0.537877557026319 0.1698817 0.40335128 prediction 0.437761960725841 Functional Loss - PLXDC2 ENSG00000120594 CDS Human protein_coding chr10:20568675 chr10:20568676 synonymous SNV . 0 22 hm5C_associated_SNPs_82729 0 0 0 0 1 PLXDC2 chr10:20568632 3'AG 20568632 Downstream 45bp
chr2 234835272 234835272 1 + G T LUAD 234835270 + 234835250 234835290 41 CCCTGTACTCCAGCGCGTCTCGGAGCACAGACTTGTCTTAC CCCTGTACTCCAGCGCGTCTCGTAGCACAGACTTGTCTTAC < 41bp 0.718879457481439 0.361326381592817 0.9228389 0.4227178 prediction 0.437758914962879 Functional Loss - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234835270 chr2:234835272 synonymous SNV . 0 23 hm5C_associated_SNPs_82730 0 0 0 0 1 TRPM8 chr2:234835178 3'AG 234835178 Downstream 95bp
chr5 138260997 138260997 1 + G A HNSC 138260994 + 138260974 138261014 41 GCAGCCGTGGAAGCCCTCAGCTCGGACCCTGCCCAGCCCAT GCAGCCGTGGAAGCCCTCAGCTCAGACCCTGCCCAGCCCAT < 41bp 0.802619358736624 0.583740143492985 0.5311962 0.310149 prediction 0.437758430487278 Functional Loss - CTNNA1 ENSG00000044115 CDS Human protein_coding chr5:138260994 chr5:138260997 synonymous SNV . 0 24 hm5C_associated_SNPs_82731 0 0 1 0 1 CTNNA1 chr5:138260945 3'AG 138260945 Downstream 53bp
chr10 124896612 124896612 1 + T C rs199720543 124896611 + 124896591 124896631 41 CTGAGAGACTCCTCCCCCGCCTCCGGCACAGACCGCGACTC CTGAGAGACTCCTCCCCCGCCCCCGGCACAGACCGCGACTC < 41bp 0.718878344230184 0.468236137313311 0.20582607 0.19344452 prediction 0.437756688460367 Functional Loss - HMX3 ENSG00000188620 CDS Human protein_coding chr10:124896611 chr10:124896612 nonsynonymous SNV 0.254 3 22 hm5C_associated_SNPs_82732 0 0 1 0 1 HMX3 chr10:124896574 3'AG 124896574 Downstream 39bp
chr1 117631499 117631499 1 + G A PRAD 117631496 + 117631476 117631516 41 AGCTCACAATGTTAAGAATCCCCGAGTGCAGACTTCCATAG AGCTCACAATGTTAAGAATCCCCAAGTGCAGACTTCCATAG < 41bp 0.718873948208416 0.480165134746081 0.11994484 0.18411288 prediction 0.437747896416832 Functional Loss - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117631496 chr1:117631499 nonsynonymous SNV 0.612 4 24 hm5C_associated_SNPs_82733 0 0 1 0 1 TTF2 chr1:117631423 3'AG 117631423 Downstream 77bp
chr2 220147592 220147592 1 + G C LUAD 220147591 + 220147571 220147611 41 CCTTCTCAGAGCTTCAGAACCGGGGTTCCCGACACTCAGGC CCTTCTCAGAGCTTCAGAACCCGGGTTCCCGACACTCAGGC < 41bp 0.900140093956358 0.681267725552868 0.9648786 0.90456796 prediction 0.43774473680698 Functional Loss - DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220147591 chr2:220147592 nonsynonymous SNV 0.993 1 22 hm5C_associated_SNPs_82734 0 0 0 0 2 DNAJB2 chr2:220147559 3'AG 220147559 Downstream 34bp
chr2 220147592 220147592 1 + G C LUAD 220147591 + 220147571 220147611 41 CCTTCTCAGAGCTTCAGAACCGGGGTTCCCGACACTCAGGC CCTTCTCAGAGCTTCAGAACCCGGGTTCCCGACACTCAGGC < 41bp 0.900140093956358 0.681267725552868 0.9648786 0.90456796 prediction 0.43774473680698 Functional Loss - DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220147591 chr2:220147592 nonsynonymous SNV 0.993 1 22 hm5C_associated_SNPs_82734 0 0 0 0 2 DNAJB2 chr2:220147651 5'GT 220147651 Upstream 60bp
chr21 33825696 33825696 1 + G T UCEC 33825694 + 33825674 33825714 41 ATTTGAATCTACAGTGCCCTCGGCATTCTACGATAAGTGTC ATTTGAATCTACAGTGCCCTCGTCATTCTACGATAAGTGTC < 41bp 0.781483844116166 0.562613434042046 0.782004 0.27952498 prediction 0.43774082014824 Functional Loss - EVA1C ENSG00000166979 CDS Human protein_coding chr21:33825694 chr21:33825696 synonymous SNV . 0 23 hm5C_associated_SNPs_82735 0 0 0 0 1 EVA1C chr21:33825620 3'AG 33825620 Downstream 77bp
chr6 348264 348264 1 + A T COAD 348260 + 348240 348280 41 AGCTCCAGGAGTTTGAGAAGCATGAGGTCCATCAGGTAAGC AGCTCCAGGAGTTTGAGAAGCATGTGGTCCATCAGGTAAGC < 41bp 0.718865088384484 0.388007790292266 0.4474133 0.24826524 prediction 0.437730176768968 Functional Loss - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348260 chr6:348264 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_82736 0 0 0 0 1 DUSP22 chr6:348274 5'GT 348274 Upstream 11bp
chr6 348263 348263 1 + G T LUSC 348260 + 348240 348280 41 AGCTCCAGGAGTTTGAGAAGCATGAGGTCCATCAGGTAAGC AGCTCCAGGAGTTTGAGAAGCATTAGGTCCATCAGGTAAGC < 41bp 0.718865088384484 0.320673170810075 0.4474133 0.22539258 prediction 0.437730176768968 Functional Loss - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348260 chr6:348263 stopgain 0.998 1 24 hm5C_associated_SNPs_82737 0 0 0 0 1 DUSP22 chr6:348274 5'GT 348274 Upstream 12bp
chr1 12921166 12921166 1 + C T LUSC 12921164 + 12921144 12921184 41 GTCTCTCCCAGTTCCCAAGCCTCGGTTACCTAAAGCATCTG GTCTCTCCCAGTTCCCAAGCCTTGGTTACCTAAAGCATCTG < 41bp 0.718864981331275 0.451349107410108 0.030638993 0.014110327 prediction 0.437729962662549 Functional Loss - PRAMEF2 ENSG00000120952 CDS Human protein_coding chr1:12921164 chr1:12921166 synonymous SNV . 0 23 hm5C_associated_SNPs_82738 0 0 0 0 1 PRAMEF2 chr1:12921076 3'AG 12921076 Downstream 91bp
chr16 82101891 82101891 1 + T C LUSC 82101890 + 82101870 82101910 41 GCTGAGGAATTGCGAAGAACCTGCTCTCCGCGCCTCTCGGT GCTGAGGAATTGCGAAGAACCCGCTCTCCGCGCCTCTCGGT < 41bp 0.801638771402716 0.582776145725142 0.13210803 0.083234996 prediction 0.437725251355147 Functional Loss - HSD17B2 ENSG00000086696 CDS Human protein_coding chr16:82101890 chr16:82101891 nonsynonymous SNV 0.122 3 22 hm5C_associated_SNPs_82739 0 0 1 0 1 HSD17B2 chr16:82101987 5'GT 82101987 Upstream 97bp
chr18 72201918 72201918 1 + G A rs11151964 72201915 + 72201895 72201935 41 CCAGCCTAATGGATCCCAAACTCGGGAGAATGGTGAGTAGG CCAGCCTAATGGATCCCAAACTCAGGAGAATGGTGAGTAGG < 41bp 0.718862439893426 0.47405373324538 0.49723977 0.29678956 prediction 0.437724879786853 Functional Loss - CNDP1 ENSG00000150656 CDS Human protein_coding chr18:72201915 chr18:72201918 nonsynonymous SNV 0.061 1 24 hm5C_associated_SNPs_82740 0 0 0 0 1 CNDP1 chr18:72201926 5'GT 72201926 Upstream 9bp
chr2 113482368 113482368 1 + C T UCEC 113482366 + 113482346 113482386 41 CACCCCCAACAGGCTGAAGCCTCGGGCAGGCCCTGGAGGTC CACCCCCAACAGGCTGAAGCCTTGGGCAGGCCCTGGAGGTC < 41bp 0.806150157738605 0.587289901068717 0.39635012 0.3793912 prediction 0.437720513339777 Functional Loss - NT5DC4 ENSG00000144130 CDS Human protein_coding chr2:113482366 chr2:113482368 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_82743 0 0 0 0 2 NT5DC4 chr2:113482358 3'AG 113482358 Downstream 11bp
chr2 113482368 113482368 1 + C T UCEC 113482366 + 113482346 113482386 41 CACCCCCAACAGGCTGAAGCCTCGGGCAGGCCCTGGAGGTC CACCCCCAACAGGCTGAAGCCTTGGGCAGGCCCTGGAGGTC < 41bp 0.806150157738605 0.587289901068717 0.39635012 0.3793912 prediction 0.437720513339777 Functional Loss - NT5DC4 ENSG00000144130 CDS Human protein_coding chr2:113482366 chr2:113482368 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_82743 0 0 0 0 2 NT5DC4 chr2:113482465 5'GT 113482465 Upstream 98bp
chr19 3110151 3110151 1 + G A rs61731117 3110148 + 3110128 3110168 41 CACGTGCCCCGTCCCCCAGGCACGGGCGAGAGCGGGAAGAG CACGTGCCCCGTCCCCCAGGCACAGGCGAGAGCGGGAAGAG < 41bp 0.718858994858129 0.472739958785603 0.13034758 0.08362627 prediction 0.437717989716257 Functional Loss - GNA11 ENSG00000088256 CDS Human protein_coding chr19:3110148 chr19:3110151 synonymous SNV . 0 24 hm5C_associated_SNPs_82744 0 0 0 0 1 GNA11 chr19:3110147 3'AG 3110147 Downstream 5bp
chr3 119533877 119533877 1 + G T UCEC 119533874 + 119533854 119533894 41 CTGCTGAAGGGGGCCGCTTTCGAGCTGTGTCAACTGAGATT CTGCTGAAGGGGGCCGCTTTCGATCTGTGTCAACTGAGATT < 41bp 0.718857556085411 0.308043969616828 0.89131606 0.11235458 prediction 0.437715112170821 Functional Loss - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119533874 chr3:119533877 nonsynonymous SNV 0.453 4 24 hm5C_associated_SNPs_82745 0 0 1 0 2 NR1I2 chr3:119533826 3'AG 119533826 Downstream 52bp
chr3 119533877 119533877 1 + G T UCEC 119533874 + 119533854 119533894 41 CTGCTGAAGGGGGCCGCTTTCGAGCTGTGTCAACTGAGATT CTGCTGAAGGGGGCCGCTTTCGATCTGTGTCAACTGAGATT < 41bp 0.718857556085411 0.308043969616828 0.89131606 0.11235458 prediction 0.437715112170821 Functional Loss - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119533874 chr3:119533877 nonsynonymous SNV 0.453 4 24 hm5C_associated_SNPs_82745 0 0 1 0 2 NR1I2 chr3:119533968 5'GT 119533968 Upstream 92bp
chrX 75397487 75397487 1 + G A UCEC 75397484 + 75397464 75397504 41 ATTCTTTGCCATTGAAATTGCTCGGAACCGGGAAGGCTATA ATTCTTTGCCATTGAAATTGCTCAGAACCGGGAAGGCTATA < 41bp 0.742189862243241 0.523333668776194 0.27314454 0.2844503 prediction 0.437712386934094 Functional Loss - PBDC1 ENSG00000102390 CDS Human protein_coding chrX:75397484 chrX:75397487 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_82746 0 0 1 0 1 PBDC1 chrX:75397451 3'AG 75397451 Downstream 37bp
chr3 43020828 43020828 1 + G A rs140922267 43020825 + 43020805 43020845 41 TTTGCAAACTCTGCAAAAGTCCCGAGTAGACCGCAGAGGCT TTTGCAAACTCTGCAAAAGTCCCAAGTAGACCGCAGAGGCT < 41bp 0.718855911732117 0.492513434005454 0.30288726 0.12232971 prediction 0.437711823464235 Functional Loss - FAM198A ENSG00000144649 UTR5 Human protein_coding chr3:43020825 chr3:43020828 . . 0 24 hm5C_associated_SNPs_82747 0 0 0 0 1 FAM198A chr3:43020856 5'GT 43020856 Upstream 29bp
chr6 97058603 97058603 1 + C T LUSC 97058600 + 97058580 97058620 41 TGCTACAACCATCTTTATGCCAACAAGTGTGTAGCCTGTTC TGCTACAACCATCTTTATGCCAATAAGTGTGTAGCCTGTTC < 41bp 0.718853561271861 0.498993734283035 0.09885585 0.1375047 prediction 0.437707122543722 Functional Loss - FHL5 ENSG00000112214 CDS Human protein_coding chr6:97058600 chr6:97058603 synonymous SNV . 0 24 hm5C_associated_SNPs_82748 0 0 0 0 1 FHL5 chr6:97058634 5'GT 97058634 Upstream 32bp
chr19 49674971 49674971 1 + G A BLCA 49674968 + 49674948 49674988 41 GGGAGCCAGGCAAGGCGAAGCCCGAGATCGAATCAGGCGTT GGGAGCCAGGCAAGGCGAAGCCCAAGATCGAATCAGGCGTT < 41bp 0.718853530717553 0.470534237754666 0.3674469 0.42822573 prediction 0.437707061435106 Functional Loss - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49674968 chr19:49674971 nonsynonymous SNV 0.335 0 24 hm5C_associated_SNPs_82749 0 0 1 0 1 TRPM4 chr19:49675026 5'GT 49675026 Upstream 56bp
chr16 31885195 31885195 1 + G A rs367609414 31885192 + 31885172 31885212 41 CTGGGAGGCCCAGGCGGCTTCGCGTTCTGAGAATAAACAGA CTGGGAGGCCCAGGCGGCTTCGCATTCTGAGAATAAACAGA < 41bp 0.718847124792968 0.477966340362067 0.7307316 0.39534324 prediction 0.437694249585936 Functional Loss - ZNF267 ENSG00000185947 CDS Human protein_coding chr16:31885192 chr16:31885195 unknown . 0 24 hm5C_associated_SNPs_82753 0 0 1 0 1 ZNF267 chr16:31885290 5'GT 31885290 Upstream 96bp
chr11 66329571 66329571 1 + C T UCEC 66329569 + 66329549 66329589 41 AGTGGAGAACCAGGTACTGACCCGAGACGCCAAGGGACTGA AGTGGAGAACCAGGTACTGACCTGAGACGCCAAGGGACTGA < 41bp 0.718846014259845 0.444584497065594 0.5071459 0.4439138 prediction 0.437692028519689 Functional Loss - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66329569 chr11:66329571 unknown 1.000 0 23 hm5C_associated_SNPs_82757 0 0 0 0 1 ACTN3 chr11:66329493 3'AG 66329493 Downstream 79bp
chr19 19166658 19166658 1 + G T SARC 19166656 + 19166636 19166676 41 GCCCTGCGTAAGCCCGACAACAGCCGCATCATCGTGGAGGG GCCCTGCGTAAGCCCGACAACATCCGCATCATCGTGGAGGG < 41bp 0.718844595992483 0.363115022298694 0.29094034 0.14433205 prediction 0.437689191984966 Functional Loss - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19166656 chr19:19166658 nonsynonymous SNV 0.877 1 23 hm5C_associated_SNPs_82758 0 0 0 0 2 ARMC6 chr19:19166600 3'AG 19166600 Downstream 59bp
chr19 19166658 19166658 1 + G T SARC 19166656 + 19166636 19166676 41 GCCCTGCGTAAGCCCGACAACAGCCGCATCATCGTGGAGGG GCCCTGCGTAAGCCCGACAACATCCGCATCATCGTGGAGGG < 41bp 0.718844595992483 0.363115022298694 0.29094034 0.14433205 prediction 0.437689191984966 Functional Loss - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19166656 chr19:19166658 nonsynonymous SNV 0.877 1 23 hm5C_associated_SNPs_82758 0 0 0 0 2 ARMC6 chr19:19166737 5'GT 19166737 Upstream 80bp
chr4 726202 726202 1 + C T rs73221123 726200 + 726180 726220 41 CCTGGGCAGGCTCCCGTGTCCTCAGTATGCATCAGGTCTCC CCTGGGCAGGCTCCCGTGTCCTTAGTATGCATCAGGTCTCC < 41bp 0.718841668521352 0.491014216803511 0.103096604 0.12693027 prediction 0.437683337042704 Functional Loss - PCGF3 ENSG00000185619 UTR5 Human protein_coding chr4:726200 chr4:726202 . . 0 23 hm5C_associated_SNPs_82763 0 0 1 0 2 PCGF3 chr4:726189 3'AG 726189 Downstream 14bp
chr4 726202 726202 1 + C T rs73221123 726200 + 726180 726220 41 CCTGGGCAGGCTCCCGTGTCCTCAGTATGCATCAGGTCTCC CCTGGGCAGGCTCCCGTGTCCTTAGTATGCATCAGGTCTCC < 41bp 0.718841668521352 0.491014216803511 0.103096604 0.12693027 prediction 0.437683337042704 Functional Loss - PCGF3 ENSG00000185619 UTR5 Human protein_coding chr4:726200 chr4:726202 . . 0 23 hm5C_associated_SNPs_82763 0 0 1 0 2 PCGF3 chr4:726287 5'GT 726287 Upstream 86bp
chr3 55108176 55108176 1 + C T SKCM 55108174 + 55108154 55108194 41 AGTGTGGGGGTGCGCCGAGTCTCCAAGCCCAGACAGTCCTC AGTGTGGGGGTGCGCCGAGTCTTCAAGCCCAGACAGTCCTC < 41bp 0.727857739292776 0.509017962599367 0.96684396 0.25660178 prediction 0.437679553386818 Functional Loss - CACNA2D3 ENSG00000157445 CDS Human protein_coding chr3:55108174 chr3:55108176 synonymous SNV . 0 23 hm5C_associated_SNPs_82764 0 0 0 0 1 CACNA2D3 chr3:55108141 3'AG 55108141 Downstream 36bp
chr11 76829339 76829339 1 + C T UCEC 76829337 + 76829317 76829357 41 CTGGACGCTGCATGAGGACCCGCGACAGAACCGCGGTGGCG CTGGACGCTGCATGAGGACCCGTGACAGAACCGCGGTGGCG < 41bp 0.847625135109044 0.628786796955623 0.38755053 0.29043537 prediction 0.437676676306841 Functional Loss - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76829337 chr11:76829339 stopgain 0.032 0 23 hm5C_associated_SNPs_82765 0 0 0 0 1 CAPN5 chr11:76829398 5'GT 76829398 Upstream 60bp
chr20 62614420 62614420 1 + G A COAD 62614417 + 62614397 62614437 41 CAGCGCCACTGGCTTCACCACGCGGTCAGACATTGGGCCCG CAGCGCCACTGGCTTCACCACGCAGTCAGACATTGGGCCCG < 41bp 0.792287364511833 0.5734496842539 0.8951228 0.722448 prediction 0.437675360515866 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62614417 chr20:62614420 nonsynonymous SNV 0.928 5 24 hm5C_associated_SNPs_82766 0 0 1 0 1 PRPF6 chr20:62614400 3'AG 62614400 Downstream 21bp
chr1 52803503 52803503 1 + G A rs141578777 52803500 + 52803480 52803520 41 ATTCCTTGAGGCAGGCACTGCGAGAGATGAAGGACTTCACC ATTCCTTGAGGCAGGCACTGCGAAAGATGAAGGACTTCACC < 41bp 0.71883538559413 0.479550245880106 0.8606777 0.23164341 prediction 0.43767077118826 Functional Loss - ZFYVE9 ENSG00000157077 CDS Human protein_coding chr1:52803500 chr1:52803503 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_82767 0 0 1 0 1 ZFYVE9 chr1:52803444 3'AG 52803444 Downstream 60bp
chr16 88779820 88779820 1 + G A UCEC 88779817 + 88779797 88779837 41 CTATCAAGCTCATGACCAACCTGGCGCTGGGTCGAGGGGCC CTATCAAGCTCATGACCAACCTGACGCTGGGTCGAGGGGCC < 41bp 0.802387755128204 0.583553621689327 0.1608415 0.0651958 prediction 0.437668266877754 Functional Loss - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88779817 chr16:88779820 nonsynonymous SNV 0.991 3 24 hm5C_associated_SNPs_82768 0 0 1 0 1 CTU2 chr16:88779855 5'GT 88779855 Upstream 36bp
chrX 140993326 140993326 1 + G C LIHC 140993322 + 140993302 140993342 41 CCCCAGAGTTCTCCTGAGAGCGACGACACCCTGTATCCTCT CCCCAGAGTTCTCCTGAGAGCGACCACACCCTGTATCCTCT < 41bp 0.71882940468785 0.407742956492275 0.058028013 0.02050367 prediction 0.4376588093757 Functional Loss - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140993322 chrX:140993326 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_82771 0 0 0 0 1 MAGEC1 chrX:140993333 5'GT 140993333 Upstream 8bp
chr10 1061808 1061808 1 + G A UCEC 1061805 + 1061785 1061825 41 TGGGAGTTGCTCTCGAACTCCACGTGACGTTTCTGGTCTTA TGGGAGTTGCTCTCGAACTCCACATGACGTTTCTGGTCTTA < 41bp 0.718829342152197 0.474721612454399 0.47810957 0.4724955 prediction 0.437658684304394 Functional Loss - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1061805 chr10:1061808 nonsynonymous SNV 0.544 4 24 hm5C_associated_SNPs_82773 0 0 1 0 1 GTPBP4 chr10:1061836 5'GT 1061836 Upstream 29bp
chr9 127982928 127982928 1 + G C HNSC 127982924 + 127982904 127982944 41 CAGCTATATGTCTTTGGGGGCGGAGAGAGAGGTGCCCAGCC CAGCTATATGTCTTTGGGGGCGGACAGAGAGGTGCCCAGCC < 41bp 0.718828870654501 0.421713805212072 0.9281949 0.89232194 prediction 0.437657741309002 Functional Loss - RABEPK ENSG00000136933 CDS Human protein_coding chr9:127982924 chr9:127982928 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_82774 0 0 1 0 1 RABEPK chr9:127982979 5'GT 127982979 Upstream 52bp
chr1 100606013 100606013 1 + C T STAD 100606011 + 100605991 100606031 41 TTATGTCCCATCCAGCATTACACGATGCACTTAATGACCCT TTATGTCCCATCCAGCATTACATGATGCACTTAATGACCCT < 41bp 0.855031386678124 0.636207505463147 0.09581894 0.12869999 prediction 0.437647762429954 Functional Loss - TRMT13 ENSG00000122435 CDS Human protein_coding chr1:100606011 chr1:100606013 synonymous SNV . 0 23 hm5C_associated_SNPs_82776 0 0 1 0 3 TRMT13 chr1:100605964 3'AG 100605964 Downstream 50bp
chr1 100606013 100606013 1 + C T STAD 100606011 + 100605991 100606031 41 TTATGTCCCATCCAGCATTACACGATGCACTTAATGACCCT TTATGTCCCATCCAGCATTACATGATGCACTTAATGACCCT < 41bp 0.855031386678124 0.636207505463147 0.09581894 0.12869999 prediction 0.437647762429954 Functional Loss - TRMT13 ENSG00000122435 CDS Human protein_coding chr1:100606011 chr1:100606013 synonymous SNV . 0 23 hm5C_associated_SNPs_82776 0 0 1 0 3 TRMT13 chr1:100606006 3'AG 100606006 Downstream 8bp
chr1 100606013 100606013 1 + C T STAD 100606011 + 100605991 100606031 41 TTATGTCCCATCCAGCATTACACGATGCACTTAATGACCCT TTATGTCCCATCCAGCATTACATGATGCACTTAATGACCCT < 41bp 0.855031386678124 0.636207505463147 0.09581894 0.12869999 prediction 0.437647762429954 Functional Loss - TRMT13 ENSG00000122435 CDS Human protein_coding chr1:100606011 chr1:100606013 synonymous SNV . 0 23 hm5C_associated_SNPs_82776 0 0 1 0 3 TRMT13 chr1:100606070 5'GT 100606070 Upstream 58bp
chr21 43711704 43711704 1 + A C KIRC 43711703 + 43711683 43711723 41 CTGTTTGCCGCGCTGGGCACCATGACCTCCCTGGTGGCACA CTGTTTGCCGCGCTGGGCACCCTGACCTCCCTGGTGGCACA < 41bp 0.718819773976824 0.466234233113123 0.10094461 0.026952535 prediction 0.437639547953648 Functional Loss - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43711703 chr21:43711704 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_82778 0 0 0 0 2 ABCG1 chr21:43711608 3'AG 43711608 Downstream 97bp
chr21 43711704 43711704 1 + A C KIRC 43711703 + 43711683 43711723 41 CTGTTTGCCGCGCTGGGCACCATGACCTCCCTGGTGGCACA CTGTTTGCCGCGCTGGGCACCCTGACCTCCCTGGTGGCACA < 41bp 0.718819773976824 0.466234233113123 0.10094461 0.026952535 prediction 0.437639547953648 Functional Loss - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43711703 chr21:43711704 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_82778 0 0 0 0 2 ABCG1 chr21:43711766 5'GT 43711766 Upstream 63bp
chr14 19563489 19563489 1 + G T COAD 19563486 + 19563466 19563506 41 AAAACATTGATGTATCTTCTCAAGATCTATCTGGACAGACG AAAACATTGATGTATCTTCTCAATATCTATCTGGACAGACG < 41bp 0.718818101783334 0.324284445019893 0.69290864 0.17818984 prediction 0.437636203566669 Functional Loss - POTEG ENSG00000222036 CDS Human protein_coding chr14:19563486 chr14:19563489 nonsynonymous SNV 0.008 3 24 hm5C_associated_SNPs_82779 0 0 0 0 2 POTEG chr14:19563404 3'AG 19563404 Downstream 86bp
chr14 19563489 19563489 1 + G T COAD 19563486 + 19563466 19563506 41 AAAACATTGATGTATCTTCTCAAGATCTATCTGGACAGACG AAAACATTGATGTATCTTCTCAATATCTATCTGGACAGACG < 41bp 0.718818101783334 0.324284445019893 0.69290864 0.17818984 prediction 0.437636203566669 Functional Loss - POTEG ENSG00000222036 CDS Human protein_coding chr14:19563486 chr14:19563489 nonsynonymous SNV 0.008 3 24 hm5C_associated_SNPs_82779 0 0 0 0 2 POTEG chr14:19563541 5'GT 19563541 Upstream 53bp
chr11 118404150 118404150 1 + G A rs149751735 118404147 + 118404127 118404167 41 TCCTCCAGGGCTTCTGGCTACCCGGGTGGAAGTGCCACTGC TCCTCCAGGGCTTCTGGCTACCCAGGTGGAAGTGCCACTGC < 41bp 0.785236056571215 0.566419580308554 0.69545674 0.2836507 prediction 0.437632952525321 Functional Loss - TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118404147 chr11:118404150 nonsynonymous SNV 0.934 0 24 hm5C_associated_SNPs_82781 0 0 1 0 1 TMEM25 chr11:118404135 3'AG 118404135 Downstream 16bp
chr1 111861256 111861256 1 + G T READ 111861254 + 111861234 111861274 41 CCCCACCTCTGGTGCTGGTCCTGCTGGGCCCTATGCCAAGG CCCCACCTCTGGTGCTGGTCCTTCTGGGCCCTATGCCAAGG < 41bp 0.718812381067088 0.371218127083266 0.035871744 0.03230989 prediction 0.437624762134176 Functional Loss - CHIA ENSG00000134216 CDS Human protein_coding chr1:111861254 chr1:111861256 nonsynonymous SNV 0.869 0 23 hm5C_associated_SNPs_82785 0 0 0 0 1 CHIA chr1:111861300 5'GT 111861300 Upstream 45bp
chr15 43690283 43690283 1 + C T COAD 43690280 + 43690260 43690300 41 GGCCTTCTCGGGAAACTTCTCCCCGGGAAGCCCCTGCATCT GGCCTTCTCGGGAAACTTCTCCCTGGGAAGCCCCTGCATCT < 41bp 0.720482151470104 0.501670874271811 0.38428208 0.38549763 prediction 0.437622554396585 Functional Loss - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43690280 chr15:43690283 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_82786 0 0 1 0 3 TUBGCP4 chr15:43690236 3'AG 43690236 Downstream 48bp
chr15 43690283 43690283 1 + C T COAD 43690280 + 43690260 43690300 41 GGCCTTCTCGGGAAACTTCTCCCCGGGAAGCCCCTGCATCT GGCCTTCTCGGGAAACTTCTCCCTGGGAAGCCCCTGCATCT < 41bp 0.720482151470104 0.501670874271811 0.38428208 0.38549763 prediction 0.437622554396585 Functional Loss - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43690280 chr15:43690283 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_82786 0 0 1 0 3 TUBGCP4 chr15:43690239 3'AG 43690239 Downstream 45bp
chr15 43690283 43690283 1 + C T COAD 43690280 + 43690260 43690300 41 GGCCTTCTCGGGAAACTTCTCCCCGGGAAGCCCCTGCATCT GGCCTTCTCGGGAAACTTCTCCCTGGGAAGCCCCTGCATCT < 41bp 0.720482151470104 0.501670874271811 0.38428208 0.38549763 prediction 0.437622554396585 Functional Loss - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43690280 chr15:43690283 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_82786 0 0 1 0 3 TUBGCP4 chr15:43690377 5'GT 43690377 Upstream 95bp
chr5 156752621 156752621 1 + G A LUAD 156752618 + 156752598 156752638 41 GGATTCTAACGGACCATATCCTGGAAACCAAAGAACCTTCC GGATTCTAACGGACCATATCCTGAAAACCAAAGAACCTTCC < 41bp 0.770419480627642 0.55161083595828 0.33700192 0.2215246 prediction 0.437617289338724 Functional Loss - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156752618 chr5:156752621 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_82788 0 0 1 0 1 CYFIP2 chr5:156752646 5'GT 156752646 Upstream 26bp
chr17 45668212 45668212 1 + G A ESCA 45668209 + 45668189 45668229 41 CTGCTGATTACACCCGTGCCCAGGAGCTTGACGCCTTAGAT CTGCTGATTACACCCGTGCCCAGAAGCTTGACGCCTTAGAT < 41bp 0.77788036009492 0.559072555569827 0.52100575 0.40596762 prediction 0.437615609050185 Functional Loss - NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45668209 chr17:45668212 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_82789 0 0 0 0 1 NPEPPS chr17:45668247 5'GT 45668247 Upstream 36bp
chr15 81574986 81574986 1 + G T BLCA 81574984 + 81574964 81575004 41 CCTGTTCTGCTTCCAGAGGCCGGCGTGGGCCTGGGCATCGG CCTGTTCTGCTTCCAGAGGCCGTCGTGGGCCTGGGCATCGG < 41bp 0.7188077560214 0.382339583330986 0.81331253 0.40503284 prediction 0.4376155120428 Functional Loss - IL16 ENSG00000172349 CDS Human protein_coding chr15:81574984 chr15:81574986 nonsynonymous SNV 0.139 4 23 hm5C_associated_SNPs_82790 0 0 0 0 1 IL16 chr15:81574980 3'AG 81574980 Downstream 7bp
chr12 46242663 46242663 1 + G A UCEC 46242660 + 46242640 46242680 41 AAATCCAGATTGTTCTGTTTCTCGAGCAGAAATGTATTCTG AAATCCAGATTGTTCTGTTTCTCAAGCAGAAATGTATTCTG < 41bp 0.719754830031529 0.500947089787318 0.091174245 0.0797635 prediction 0.437615480488422 Functional Loss - ARID2 ENSG00000189079 CDS Human protein_coding chr12:46242660 chr12:46242663 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_82791 0 0 1 0 2 ARID2 chr12:46242619 3'AG 46242619 Downstream 45bp
chr12 46242663 46242663 1 + G A UCEC 46242660 + 46242640 46242680 41 AAATCCAGATTGTTCTGTTTCTCGAGCAGAAATGTATTCTG AAATCCAGATTGTTCTGTTTCTCAAGCAGAAATGTATTCTG < 41bp 0.719754830031529 0.500947089787318 0.091174245 0.0797635 prediction 0.437615480488422 Functional Loss - ARID2 ENSG00000189079 CDS Human protein_coding chr12:46242660 chr12:46242663 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_82791 0 0 1 0 2 ARID2 chr12:46242753 5'GT 46242753 Upstream 91bp
chr1 110019488 110019488 1 + C T OV 110019485 + 110019465 110019505 41 ATGGGGGACTTCTCTGCACCCGCCGAGTTCTTCGTGACCCT ATGGGGGACTTCTCTGCACCCGCTGAGTTCTTCGTGACCCT < 41bp 0.731824709994648 0.513020310958316 0.20238182 0.1045886 prediction 0.437608798072664 Functional Loss - SYPL2 ENSG00000143028 CDS Human protein_coding chr1:110019485 chr1:110019488 synonymous SNV . 0 24 hm5C_associated_SNPs_82792 0 0 0 0 1 SYPL2 chr1:110019398 3'AG 110019398 Downstream 91bp
chr15 78566612 78566612 1 + G T UCEC 78566610 + 78566590 78566630 41 GGGGGATGCAGATCCACATCCAGCAGATCGGGCCGGGCATG GGGGGATGCAGATCCACATCCATCAGATCGGGCCGGGCATG < 41bp 0.91408855974194 0.695292949032244 0.85352993 0.46137497 prediction 0.437591221419392 Functional Loss - DNAJA4 ENSG00000140403 CDS Human protein_coding chr15:78566610 chr15:78566612 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_82797 0 0 0 0 1 DNAJA4 chr15:78566539 3'AG 78566539 Downstream 74bp
chr11 119003661 119003661 1 + C T BLCA 119003658 + 119003638 119003678 41 TGTGATTTTGAGAACTGCACCTTCAGTGCCCGATCCCTCTG TGTGATTTTGAGAACTGCACCTTTAGTGCCCGATCCCTCTG < 41bp 0.718794542071295 0.485821290845625 0.027639747 0.018859744 prediction 0.43758908414259 Functional Loss - HINFP ENSG00000172273 CDS Human protein_coding chr11:119003658 chr11:119003661 synonymous SNV . 0 24 hm5C_associated_SNPs_82798 0 0 1 0 2 HINFP chr11:119003574 3'AG 119003574 Downstream 88bp
chr11 119003661 119003661 1 + C T BLCA 119003658 + 119003638 119003678 41 TGTGATTTTGAGAACTGCACCTTCAGTGCCCGATCCCTCTG TGTGATTTTGAGAACTGCACCTTTAGTGCCCGATCCCTCTG < 41bp 0.718794542071295 0.485821290845625 0.027639747 0.018859744 prediction 0.43758908414259 Functional Loss - HINFP ENSG00000172273 CDS Human protein_coding chr11:119003658 chr11:119003661 synonymous SNV . 0 24 hm5C_associated_SNPs_82798 0 0 1 0 2 HINFP chr11:119003712 5'GT 119003712 Upstream 52bp
chr7 137773440 137773440 1 + G A SKCM 137773437 + 137773417 137773457 41 CCTACATCTACCAAAATGAACACGAAGTTGGGGAGGCCATC CCTACATCTACCAAAATGAACACAAAGTTGGGGAGGCCATC < 41bp 0.76621941768727 0.547429983833558 0.09440559 0.052036464 prediction 0.437578867707425 Functional Loss - AKR1D1 ENSG00000122787 CDS Human protein_coding chr7:137773437 chr7:137773440 nonsynonymous SNV 0.339 4 24 hm5C_associated_SNPs_82802 0 0 1 1 2 AKR1D1 chr7:137773347 3'AG 137773347 Downstream 94bp
chr7 137773440 137773440 1 + G A SKCM 137773437 + 137773417 137773457 41 CCTACATCTACCAAAATGAACACGAAGTTGGGGAGGCCATC CCTACATCTACCAAAATGAACACAAAGTTGGGGAGGCCATC < 41bp 0.76621941768727 0.547429983833558 0.09440559 0.052036464 prediction 0.437578867707425 Functional Loss - AKR1D1 ENSG00000122787 CDS Human protein_coding chr7:137773437 chr7:137773440 nonsynonymous SNV 0.339 4 24 hm5C_associated_SNPs_82802 0 0 1 1 2 AKR1D1 chr7:137773514 5'GT 137773514 Upstream 75bp
chr7 73275872 73275872 1 + C T rs565308867 73275870 + 73275850 73275890 41 GCTCGTTGCAGCCTCCAACTCCCGGTCTCAAGCAATCCTCC GCTCGTTGCAGCCTCCAACTCCTGGTCTCAAGCAATCCTCC < 41bp 0.718789163722014 0.48540301413739 0.31306952 0.0762279 prediction 0.437578327444027 Functional Loss - TMEM270 ENSG00000175877 CDS Human protein_coding chr7:73275870 chr7:73275872 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_82803 0 0 0 0 2 TMEM270 chr7:73275799 3'AG 73275799 Downstream 74bp
chr7 73275872 73275872 1 + C T rs565308867 73275870 + 73275850 73275890 41 GCTCGTTGCAGCCTCCAACTCCCGGTCTCAAGCAATCCTCC GCTCGTTGCAGCCTCCAACTCCTGGTCTCAAGCAATCCTCC < 41bp 0.718789163722014 0.48540301413739 0.31306952 0.0762279 prediction 0.437578327444027 Functional Loss - TMEM270 ENSG00000175877 CDS Human protein_coding chr7:73275870 chr7:73275872 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_82803 0 0 0 0 2 TMEM270 chr7:73275921 5'GT 73275921 Upstream 50bp
chr1 44365293 44365293 1 + C T SKCM 44365291 + 44365271 44365311 41 CGCATCACCTACCCCGAGGGCGCCATGCAGCGGCCTGAGCA CGCATCACCTACCCCGAGGGCGTCATGCAGCGGCCTGAGCA < 41bp 0.806109749141995 0.587321709264098 0.29925397 0.2924474 prediction 0.437576079755795 Functional Loss - ST3GAL3 ENSG00000126091 CDS Human protein_coding chr1:44365291 chr1:44365293 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_82805 0 0 1 0 1 ST3GAL3 chr1:44365213 3'AG 44365213 Downstream 81bp
chr11 61488334 61488334 1 + C T SKCM 61488331 + 61488311 61488351 41 CTCTACACGGAGCCCCGTGACTCCATGCAGTACGTGCTCTA CTCTACACGGAGCCCCGTGACTCTATGCAGTACGTGCTCTA < 41bp 0.738196534264226 0.51940981109128 0.96169853 0.9428036 prediction 0.437573446345894 Functional Loss - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61488331 chr11:61488334 synonymous SNV . 0 24 hm5C_associated_SNPs_82806 0 0 0 0 1 DAGLA chr11:61488362 5'GT 61488362 Upstream 29bp
chr6 50807989 50807989 1 + A C STAD 50807985 + 50807965 50808005 41 ACCCGAGTGACCTGCACTCCCGAAAGAATATGCTGTTGGCC ACCCGAGTGACCTGCACTCCCGAACGAATATGCTGTTGGCC < 41bp 0.71878571189675 0.295674378185388 0.3927403 0.4234321 prediction 0.4375714237935 Functional Loss - TFAP2B ENSG00000008196 CDS Human protein_coding chr6:50807985 chr6:50807989 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_82807 0 0 0 0 1 TFAP2B chr6:50808010 5'GT 50808010 Upstream 22bp
chr19 51920435 51920435 1 + C T PRAD 51920433 + 51920413 51920453 41 TGTGACTCATCCTGCATCTGCGCGTCTCTGATCACCAAGGA TGTGACTCATCCTGCATCTGCGTGTCTCTGATCACCAAGGA < 41bp 0.782794097324993 0.564009788621215 0.06621665 0.058779478 prediction 0.437568617407556 Functional Loss - SIGLEC10 ENSG00000142512 CDS Human protein_coding chr19:51920433 chr19:51920435 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_82808 0 0 1 0 1 LOC100129083;SIGLEC10 chr19:51920386 3'AG 51920386 Downstream 50bp
chr1 3334456 3334456 1 + G A SKCM 3334453 + 3334433 3334473 41 TGCAGCCATGAAGGCGGACTCGGGCAGCTCCCTGCAGCCCC TGCAGCCATGAAGGCGGACTCGGACAGCTCCCTGCAGCCCC < 41bp 0.718782032575034 0.474390908078274 0.9393474 0.9100777 prediction 0.437564065150068 Functional Loss - PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3334453 chr1:3334456 nonsynonymous SNV 0.872 1 24 hm5C_associated_SNPs_82809 0 0 0 0 1 PRDM16 chr1:3334392 3'AG 3334392 Downstream 65bp
chr12 58166853 58166853 1 + G A OV 58166850 + 58166830 58166870 41 CAAAATGTGGATTTCCGAGGCAAGAAGGTGATCGAACTGGG CAAAATGTGGATTTCCGAGGCAAAAAGGTGATCGAACTGGG < 41bp 0.786757185075496 0.567976652191419 0.4146522 0.38020748 prediction 0.437561065768152 Functional Loss - EEF1AKMT3 ENSG00000123427;ENSG00000257921 CDS Human protein_coding chr12:58166850 chr12:58166853 synonymous SNV . 0 24 hm5C_associated_SNPs_82810 0 0 1 0 2 EEF1AKMT3 chr12:58166800 3'AG 58166800 Downstream 54bp
chr12 58166853 58166853 1 + G A OV 58166850 + 58166830 58166870 41 CAAAATGTGGATTTCCGAGGCAAGAAGGTGATCGAACTGGG CAAAATGTGGATTTCCGAGGCAAAAAGGTGATCGAACTGGG < 41bp 0.786757185075496 0.567976652191419 0.4146522 0.38020748 prediction 0.437561065768152 Functional Loss - EEF1AKMT3 ENSG00000123427;ENSG00000257921 CDS Human other chr12:58166850 chr12:58166853 synonymous SNV . 0 24 hm5C_associated_SNPs_82810 0 0 1 0 2 EEF1AKMT3 chr12:58166856 5'GT 58166856 Upstream 4bp
chr8 39871110 39871110 1 + C T ESCA 39871107 + 39871087 39871127 41 GAAAGACAACCCAGCAATGCCTGCAGGGCTGATGTATGAAG GAAAGACAACCCAGCAATGCCTGTAGGGCTGATGTATGAAG < 41bp 0.732476550548716 0.513696845752256 0.12662244 0.1192694 prediction 0.43755940959292 Functional Loss - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39871107 chr8:39871110 nonsynonymous SNV 0.018 0 24 hm5C_associated_SNPs_82812 0 0 0 3 1 IDO2 chr8:39871084 3'AG 39871084 Downstream 27bp
chr19 35655081 35655081 1 + G A UCEC 35655078 + 35655058 35655098 41 GCTCATCCCACTGATGACACCACGACGCTCTCTGAGAGACC GCTCATCCCACTGATGACACCACAACGCTCTCTGAGAGACC < 41bp 0.718775963305193 0.486346566933188 0.107131034 0.036805063 prediction 0.437551926610386 Functional Loss - FXYD5 ENSG00000089327 CDS Human protein_coding chr19:35655078 chr19:35655081 synonymous SNV . 0 24 hm5C_associated_SNPs_82814 0 0 1 0 2 FXYD5 chr19:35655059 3'AG 35655059 Downstream 23bp
chr19 35655081 35655081 1 + G A UCEC 35655078 + 35655058 35655098 41 GCTCATCCCACTGATGACACCACGACGCTCTCTGAGAGACC GCTCATCCCACTGATGACACCACAACGCTCTCTGAGAGACC < 41bp 0.718775963305193 0.486346566933188 0.107131034 0.036805063 prediction 0.437551926610386 Functional Loss - FXYD5 ENSG00000089327 CDS Human protein_coding chr19:35655078 chr19:35655081 synonymous SNV . 0 24 hm5C_associated_SNPs_82814 0 0 1 0 2 FXYD5 chr19:35655148 5'GT 35655148 Upstream 68bp
chr12 13232812 13232812 1 + A C rs141258084 13232811 + 13232791 13232831 41 CATCCAGCAGCCCTGGTGGTCAGCAAGCTTAGTCTACGGTG CATCCAGCAGCCCTGGTGGTCCGCAAGCTTAGTCTACGGTG < 41bp 0.82796422161233 0.609188732279833 0.44088128 0.2477623 prediction 0.437550978664993 Functional Loss - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13232811 chr12:13232812 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_82815 0 0 0 0 2 FAM234B chr12:13232723 3'AG 13232723 Downstream 90bp
chr12 13232812 13232812 1 + A C rs141258084 13232811 + 13232791 13232831 41 CATCCAGCAGCCCTGGTGGTCAGCAAGCTTAGTCTACGGTG CATCCAGCAGCCCTGGTGGTCCGCAAGCTTAGTCTACGGTG < 41bp 0.82796422161233 0.609188732279833 0.44088128 0.2477623 prediction 0.437550978664993 Functional Loss - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13232811 chr12:13232812 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_82815 0 0 0 0 2 FAM234B chr12:13232766 3'AG 13232766 Downstream 47bp
chr19 14815883 14815883 1 + G T LUAD 14815881 + 14815861 14815901 41 GCCAGGGGCCGGGGCTGTTCCTGAGGATGCAGCTGGTGCCC GCCAGGGGCCGGGGCTGTTCCTTAGGATGCAGCTGGTGCCC < 41bp 0.818844088677975 0.600076981731046 0.87816286 0.39754698 prediction 0.437534213893858 Functional Loss - ZNF333 ENSG00000160961 CDS Human protein_coding chr19:14815881 chr19:14815883 stopgain 0.085 0 23 hm5C_associated_SNPs_82818 0 0 1 1 2 ZNF333 chr19:14815866 3'AG 14815866 Downstream 18bp
chr19 14815883 14815883 1 + G T LUAD 14815881 + 14815861 14815901 41 GCCAGGGGCCGGGGCTGTTCCTGAGGATGCAGCTGGTGCCC GCCAGGGGCCGGGGCTGTTCCTTAGGATGCAGCTGGTGCCC < 41bp 0.818844088677975 0.600076981731046 0.87816286 0.39754698 prediction 0.437534213893858 Functional Loss - ZNF333 ENSG00000160961 CDS Human protein_coding chr19:14815881 chr19:14815883 stopgain 0.085 0 23 hm5C_associated_SNPs_82818 0 0 1 1 2 ZNF333 chr19:14815982 5'GT 14815982 Upstream 100bp
chr3 148586731 148586731 1 + C T UCEC 148586729 + 148586709 148586749 41 TCTGGTATCCAGGTGCCACCCACCACGTAGCTGCTAATATG TCTGGTATCCAGGTGCCACCCATCACGTAGCTGCTAATATG < 41bp 0.858978578180472 0.640217966962883 0.022728294 0.052397758 prediction 0.437521222435179 Functional Loss - CPA3 ENSG00000163751 CDS Human protein_coding chr3:148586729 chr3:148586731 synonymous SNV . 0 23 hm5C_associated_SNPs_82821 0 0 0 0 2 CPA3 chr3:148586702 3'AG 148586702 Downstream 30bp
chr3 148586731 148586731 1 + C T UCEC 148586729 + 148586709 148586749 41 TCTGGTATCCAGGTGCCACCCACCACGTAGCTGCTAATATG TCTGGTATCCAGGTGCCACCCATCACGTAGCTGCTAATATG < 41bp 0.858978578180472 0.640217966962883 0.022728294 0.052397758 prediction 0.437521222435179 Functional Loss - CPA3 ENSG00000163751 CDS Human protein_coding chr3:148586729 chr3:148586731 synonymous SNV . 0 23 hm5C_associated_SNPs_82821 0 0 0 0 2 CPA3 chr3:148586826 5'GT 148586826 Upstream 96bp
chr1 95709799 95709799 1 + A T UCEC 95709795 + 95709775 95709815 41 GGGACCGTGTTCAGAATTCACACAAAAGCTGAAGGATTTAT GGGACCGTGTTCAGAATTCACACATAAGCTGAAGGATTTAT < 41bp 0.718756915385096 0.39081909480978 0.043409824 0.02678451 prediction 0.437513830770193 Functional Loss - RWDD3;TMEM56-RWDD3 ENSG00000122481;ENSG00000271092 CDS Human other chr1:95709795 chr1:95709799 stopgain 0.994 0 25 hm5C_associated_SNPs_82824 0 0 1 2 1 RWDD3;TMEM56-RWDD3 chr1:95709767 3'AG 95709767 Downstream 33bp
chr17 34431961 34431961 1 + T C rs1719146 34431960 + 34431940 34431980 41 CGCCTGCTGCTTTTCTTACACTGCGAGGAAGCTTCCTCGCA CGCCTGCTGCTTTTCTTACACCGCGAGGAAGCTTCCTCGCA < 41bp 0.792275915267226 0.573520307346991 0.073663294 0.14643908 prediction 0.43751121584047 Functional Loss - CCL4 ENSG00000129277 CDS Human other chr17:34431960 chr17:34431961 synonymous SNV . 0 22 hm5C_associated_SNPs_82825 0 0 0 0 2 CCL4 chr17:34431921 3'AG 34431921 Downstream 41bp
chr17 34431961 34431961 1 + T C rs1719146 34431960 + 34431940 34431980 41 CGCCTGCTGCTTTTCTTACACTGCGAGGAAGCTTCCTCGCA CGCCTGCTGCTTTTCTTACACCGCGAGGAAGCTTCCTCGCA < 41bp 0.792275915267226 0.573520307346991 0.073663294 0.14643908 prediction 0.43751121584047 Functional Loss - CCL4 ENSG00000129277 CDS Human other chr17:34431960 chr17:34431961 synonymous SNV . 0 22 hm5C_associated_SNPs_82825 0 0 0 0 2 CCL4 chr17:34432035 5'GT 34432035 Upstream 75bp
chr4 69968602 69968602 1 + G A UCEC 69968599 + 69968579 69968619 41 CTGGGGTCAATGGTCAGTAACATGACAGAAGAAAGGGCCAA CTGGGGTCAATGGTCAGTAACATAACAGAAGAAAGGGCCAA < 41bp 0.76912464191675 0.550370422179891 0.3761982 0.24900213 prediction 0.437508439473718 Functional Loss - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69968599 chr4:69968602 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_82826 0 0 1 0 2 UGT2B7 chr4:69968525 3'AG 69968525 Downstream 78bp
chr4 69968602 69968602 1 + G A UCEC 69968599 + 69968579 69968619 41 CTGGGGTCAATGGTCAGTAACATGACAGAAGAAAGGGCCAA CTGGGGTCAATGGTCAGTAACATAACAGAAGAAAGGGCCAA < 41bp 0.76912464191675 0.550370422179891 0.3761982 0.24900213 prediction 0.437508439473718 Functional Loss - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69968599 chr4:69968602 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_82826 0 0 1 0 2 UGT2B7 chr4:69968656 5'GT 69968656 Upstream 55bp
chr22 35734776 35734776 1 + G T ACC 35734774 + 35734754 35734794 41 GGACGCCCGGCAGCAGAGCACTGGCGCGGTAAGCAGAGGGG GGACGCCCGGCAGCAGAGCACTTGCGCGGTAAGCAGAGGGG < 41bp 0.718753035439832 0.368891220111807 0.39282787 0.29790285 prediction 0.437506070879664 Functional Loss - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35734774 chr22:35734776 nonsynonymous SNV 0.950 3 23 hm5C_associated_SNPs_82827 0 0 1 0 1 TOM1 chr22:35734781 5'GT 35734781 Upstream 6bp
chr2 241992639 241992639 1 + C T DLBC 241992637 + 241992617 241992657 41 TTCAACGGCACGCGGCTGGGCGCGGTGGCCCTGTATGCATG TTCAACGGCACGCGGCTGGGCGTGGTGGCCCTGTATGCATG < 41bp 0.718753033167942 0.451408407054036 0.29635304 0.24450907 prediction 0.437506066335884 Functional Loss - SNED1 ENSG00000162804 CDS Human protein_coding chr2:241992637 chr2:241992639 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_82828 0 0 0 0 1 SNED1 chr2:241992570 3'AG 241992570 Downstream 70bp
chr19 13056783 13056783 1 + C T COAD 13056781 + 13056761 13056801 41 CCATGGCCGTCACCATCACGCTCAAAACGCTGCAGCAGCAG CCATGGCCGTCACCATCACGCTTAAAACGCTGCAGCAGCAG < 41bp 0.793142819362817 0.574390392027295 0.18275657 0.10951808 prediction 0.437504854671043 Functional Loss - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13056781 chr19:13056783 synonymous SNV . 0 23 hm5C_associated_SNPs_82829 0 0 1 0 1 RAD23A chr19:13056834 5'GT 13056834 Upstream 52bp
chr4 38907187 38907187 1 + C T rs117500892 38907184 + 38907164 38907204 41 AGGAAAAAGCAGGAGCCACTCTACGGATTCATGGTGTAAAT AGGAAAAAGCAGGAGCCACTCTATGGATTCATGGTGTAAAT < 41bp 0.718749203943337 0.491744800542284 0.18155766 0.15497029 prediction 0.437498407886673 Functional Loss - FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38907184 chr4:38907187 nonsynonymous SNV 0.953 3 24 hm5C_associated_SNPs_82831 0 0 0 0 2 FAM114A1 chr4:38907143 3'AG 38907143 Downstream 45bp
chr4 38907187 38907187 1 + C T rs117500892 38907184 + 38907164 38907204 41 AGGAAAAAGCAGGAGCCACTCTACGGATTCATGGTGTAAAT AGGAAAAAGCAGGAGCCACTCTATGGATTCATGGTGTAAAT < 41bp 0.718749203943337 0.491744800542284 0.18155766 0.15497029 prediction 0.437498407886673 Functional Loss - FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38907184 chr4:38907187 nonsynonymous SNV 0.953 3 24 hm5C_associated_SNPs_82831 0 0 0 0 2 FAM114A1 chr4:38907256 5'GT 38907256 Upstream 70bp
chr8 144130635 144130635 1 + G A HNSC 144130632 + 144130612 144130652 41 TTTTGTCATTGCAGGATTCTCTCGGCACCACGGGAACCACC TTTTGTCATTGCAGGATTCTCTCAGCACCACGGGAACCACC < 41bp 0.782748483250741 0.563999576406697 0.33022875 0.12008217 prediction 0.437497813688088 Functional Loss - C8orf31 ENSG00000177335 CDS Human processed_transcript chr8:144130632 chr8:144130635 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_82832 0 0 0 0 2 C8orf31 chr8:144130626 3'AG 144130626 Downstream 10bp
chr8 144130635 144130635 1 + G A HNSC 144130632 + 144130612 144130652 41 TTTTGTCATTGCAGGATTCTCTCGGCACCACGGGAACCACC TTTTGTCATTGCAGGATTCTCTCAGCACCACGGGAACCACC < 41bp 0.782748483250741 0.563999576406697 0.33022875 0.12008217 prediction 0.437497813688088 Functional Loss - C8orf31 ENSG00000177335 CDS Human processed_transcript chr8:144130632 chr8:144130635 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_82832 0 0 0 0 2 C8orf31 chr8:144130715 5'GT 144130715 Upstream 81bp
chr1 172437643 172437643 1 + G T UCEC 172437641 + 172437621 172437661 41 CCCAGGACAGCTGTCTTCCACGGATTACTGACAGAGGCCTA CCCAGGACAGCTGTCTTCCACGTATTACTGACAGAGGCCTA < 41bp 0.718747442625432 0.379867049484727 0.3252917 0.09078959 prediction 0.437494885250864 Functional Loss - C1orf105 ENSG00000180999 CDS Human protein_coding chr1:172437641 chr1:172437643 nonsynonymous SNV 0.011 1 23 hm5C_associated_SNPs_82833 0 0 0 0 1 C1orf105 chr1:172437589 3'AG 172437589 Downstream 55bp
chr13 113898807 113898807 1 + A T TGCT 113898803 + 113898783 113898823 41 GAGCGGACGTTGGACAAGATCATGATCCTGTTCAGGTTTAT GAGCGGACGTTGGACAAGATCATGTTCCTGTTCAGGTTTAT < 41bp 0.718747244411184 0.382140026141418 0.23613393 0.26526368 prediction 0.437494488822367 Functional Loss - CUL4A ENSG00000139842 CDS Human protein_coding chr13:113898803 chr13:113898807 nonsynonymous SNV 0.908 2 25 hm5C_associated_SNPs_82834 0 0 1 0 2 CUL4A chr13:113898724 3'AG 113898724 Downstream 84bp
chr13 113898807 113898807 1 + A T TGCT 113898803 + 113898783 113898823 41 GAGCGGACGTTGGACAAGATCATGATCCTGTTCAGGTTTAT GAGCGGACGTTGGACAAGATCATGTTCCTGTTCAGGTTTAT < 41bp 0.718747244411184 0.382140026141418 0.23613393 0.26526368 prediction 0.437494488822367 Functional Loss - CUL4A ENSG00000139842 CDS Human protein_coding chr13:113898803 chr13:113898807 nonsynonymous SNV 0.908 2 25 hm5C_associated_SNPs_82834 0 0 1 0 2 CUL4A chr13:113898828 5'GT 113898828 Upstream 22bp
chr12 53684212 53684212 1 + G T GBM 53684209 + 53684189 53684229 41 ACAGCAGCTGTACTGACAAGCGAGAATGGTGGACAGGGCGG ACAGCAGCTGTACTGACAAGCGATAATGGTGGACAGGGCGG < 41bp 0.718743515084304 0.318895490621872 0.5569647 0.8464612 prediction 0.437487030168608 Functional Loss - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53684209 chr12:53684212 stopgain 0.997 0 24 hm5C_associated_SNPs_82837 0 0 1 0 2 ESPL1 chr12:53684131 3'AG 53684131 Downstream 82bp
chr12 53684212 53684212 1 + G T GBM 53684209 + 53684189 53684229 41 ACAGCAGCTGTACTGACAAGCGAGAATGGTGGACAGGGCGG ACAGCAGCTGTACTGACAAGCGATAATGGTGGACAGGGCGG < 41bp 0.718743515084304 0.318895490621872 0.5569647 0.8464612 prediction 0.437487030168608 Functional Loss - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53684209 chr12:53684212 stopgain 0.997 0 24 hm5C_associated_SNPs_82837 0 0 1 0 2 ESPL1 chr12:53684253 5'GT 53684253 Upstream 42bp
chr9 100845195 100845195 1 + C T UCEC 100845193 + 100845173 100845213 41 ATTCTAACAATGGACATGCTCACCGTGAAGGTGGGTGAGCC ATTCTAACAATGGACATGCTCATCGTGAAGGTGGGTGAGCC < 41bp 0.718743158195685 0.450495819249718 0.059341013 0.07934561 prediction 0.437486316391369 Functional Loss - NANS ENSG00000095380 CDS Human protein_coding chr9:100845193 chr9:100845195 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_82838 0 0 1 0 1 NANS chr9:100845128 3'AG 100845128 Downstream 68bp
chr19 55179409 55179409 1 + C T SARC 55179406 + 55179386 55179426 41 ACAGAAGGCAACTGAGCCTCCTCCATCCCAGGAAGGGGCCT ACAGAAGGCAACTGAGCCTCCTCTATCCCAGGAAGGGGCCT < 41bp 0.734123891909645 0.515381913990423 0.93832844 0.870039 prediction 0.437483955838443 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55179406 chr19:55179409 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_82839 0 0 0 0 1 LILRB4 chr19:55179324 3'AG 55179324 Downstream 86bp
chr19 41084070 41084070 1 + G A UCEC 41084067 + 41084047 41084087 41 TTCTACTACCCAGGGGTGTCCACGGTTCCAGCCTCCTCCAT TTCTACTACCCAGGGGTGTCCACAGTTCCAGCCTCCTCCAT < 41bp 0.805309712955915 0.586568099508425 0.6838727 0.20219001 prediction 0.43748322689498 Functional Loss - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41084067 chr19:41084070 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_82840 0 0 1 0 2 SHKBP1 chr19:41084060 3'AG 41084060 Downstream 11bp
chr19 41084070 41084070 1 + G A UCEC 41084067 + 41084047 41084087 41 TTCTACTACCCAGGGGTGTCCACGGTTCCAGCCTCCTCCAT TTCTACTACCCAGGGGTGTCCACAGTTCCAGCCTCCTCCAT < 41bp 0.805309712955915 0.586568099508425 0.6838727 0.20219001 prediction 0.43748322689498 Functional Loss - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41084067 chr19:41084070 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_82840 0 0 1 0 2 SHKBP1 chr19:41084118 5'GT 41084118 Upstream 49bp
chr14 24769991 24769991 1 + A T rs200463538 24769987 + 24769967 24770007 41 ACACATGGCAGCTTCGTGGTCAGAACTCTGCTTCAGGTGTT ACACATGGCAGCTTCGTGGTCAGATCTCTGCTTCAGGTGTT < 41bp 0.718740918727271 0.392068087399225 0.5511475 0.5680826 prediction 0.437481837454543 Functional Loss - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24769987 chr14:24769991 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_82841 0 0 1 0 1 NOP9 chr14:24770063 5'GT 24770063 Upstream 73bp
chr9 43844281 43844281 1 + G C rs533728872 43844277 + 43844257 43844297 41 CAGGGGGCGCTGGGGAGTTTCAGGGACCTCCAGATAGACTC CAGGGGGCGCTGGGGAGTTTCAGGCACCTCCAGATAGACTC < 41bp 0.877797707827901 0.659057732250988 0.9331753 0.9035859 prediction 0.437479951153826 Functional Loss - CNTNAP3B ENSG00000154529 CDS Human protein_coding chr9:43844277 chr9:43844281 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_82842 0 0 0 0 1 CNTNAP3B chr9:43844315 5'GT 43844315 Upstream 35bp
chrX 47040962 47040962 1 + C T CESC 47040960 + 47040940 47040980 41 TGTGTCGATGCAGGCTTTCTCTCGCGCCCAGCCTGGTGCTG TGTGTCGATGCAGGCTTTCTCTTGCGCCCAGCCTGGTGCTG < 41bp 0.827963574266701 0.609225078298965 0.37486637 0.22335741 prediction 0.437476991935472 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47040960 chrX:47040962 nonsynonymous SNV 0.699 2 23 hm5C_associated_SNPs_82844 1 0 1 0 2 RBM10 chrX:47040906 3'AG 47040906 Downstream 57bp
chrX 47040962 47040962 1 + C T CESC 47040960 + 47040940 47040980 41 TGTGTCGATGCAGGCTTTCTCTCGCGCCCAGCCTGGTGCTG TGTGTCGATGCAGGCTTTCTCTTGCGCCCAGCCTGGTGCTG < 41bp 0.827963574266701 0.609225078298965 0.37486637 0.22335741 prediction 0.437476991935472 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47040960 chrX:47040962 nonsynonymous SNV 0.699 2 23 hm5C_associated_SNPs_82844 1 0 1 0 2 RBM10 chrX:47041045 5'GT 47041045 Upstream 84bp
chr16 84444349 84444349 1 + A C rs247818 84444345 + 84444325 84444365 41 AAATCTCTGGAAGAGCTGACCAAGATGGTTCCTCCAGAATG AAATCTCTGGAAGAGCTGACCAAGCTGGTTCCTCCAGAATG < 41bp 0.718731920432364 0.311431939629922 0.121002495 0.06763634 prediction 0.437463840864727 Functional Loss - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84444345 chr16:84444349 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_82847 0 0 0 0 2 ATP2C2 chr16:84444310 3'AG 84444310 Downstream 40bp
chr16 84444349 84444349 1 + A C rs247818 84444345 + 84444325 84444365 41 AAATCTCTGGAAGAGCTGACCAAGATGGTTCCTCCAGAATG AAATCTCTGGAAGAGCTGACCAAGCTGGTTCCTCCAGAATG < 41bp 0.718731920432364 0.311431939629922 0.121002495 0.06763634 prediction 0.437463840864727 Functional Loss - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84444345 chr16:84444349 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_82847 0 0 0 0 2 ATP2C2 chr16:84444371 5'GT 84444371 Upstream 23bp
chr1 110740210 110740210 1 + A T STAD 110740206 + 110740186 110740226 41 ACGCCCCCGGGCTACAGCGCCTGGATCAAGGAGGAGGTGAG ACGCCCCCGGGCTACAGCGCCTGGTTCAAGGAGGAGGTGAG < 41bp 0.718731232510959 0.386907370014619 0.46365353 0.4745951 prediction 0.437462465021918 Functional Loss - SLC6A17 ENSG00000197106 CDS Human protein_coding chr1:110740206 chr1:110740210 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_82848 0 0 0 0 1 SLC6A17 chr1:110740221 5'GT 110740221 Upstream 12bp
chr3 57898181 57898181 1 + A C COAD 57898177 + 57898157 57898197 41 GGACAGTGAAATCACAAGTACTAGAGATGAATTGCTTAGTG GGACAGTGAAATCACAAGTACTAGCGATGAATTGCTTAGTG < 41bp 0.718728775801296 0.311371482988536 0.6657223 0.2655308 prediction 0.437457551602592 Functional Loss - SLMAP ENSG00000163681 CDS Human protein_coding chr3:57898177 chr3:57898181 nonsynonymous SNV 0.989 1 25 hm5C_associated_SNPs_82849 0 0 1 0 1 SLMAP chr3:57898108 3'AG 57898108 Downstream 74bp
chr1 3624168 3624168 1 + C T BLCA 3624166 + 3624146 3624186 41 CAGATGAGCAGCCGCGCGGCCTCGGCCAGCCCCTACACCCC CAGATGAGCAGCCGCGCGGCCTTGGCCAGCCCCTACACCCC < 41bp 0.804093021579795 0.585368188495859 0.125337 0.21996146 prediction 0.437449666167871 Functional Loss - TP73 ENSG00000078900 CDS Human protein_coding chr1:3624166 chr1:3624168 nonsynonymous SNV 0.939 2 23 hm5C_associated_SNPs_82850 0 0 0 0 1 TP73 chr1:3624113 3'AG 3624113 Downstream 56bp
chr3 184297342 184297342 1 + G C LUAD 184297338 + 184297318 184297358 41 GAGGCTGTTCGGGAGTTTGCCAAGGAGATCGACGTGTCCTG GAGGCTGTTCGGGAGTTTGCCAAGCAGATCGACGTGTCCTG < 41bp 0.718719675623346 0.423370287103577 0.898478 0.76371765 prediction 0.437439351246691 Functional Loss - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184297338 chr3:184297342 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_82852 0 0 0 0 2 EPHB3 chr3:184297265 3'AG 184297265 Downstream 78bp
chr3 184297342 184297342 1 + G C LUAD 184297338 + 184297318 184297358 41 GAGGCTGTTCGGGAGTTTGCCAAGGAGATCGACGTGTCCTG GAGGCTGTTCGGGAGTTTGCCAAGCAGATCGACGTGTCCTG < 41bp 0.718719675623346 0.423370287103577 0.898478 0.76371765 prediction 0.437439351246691 Functional Loss - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184297338 chr3:184297342 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_82852 0 0 0 0 2 EPHB3 chr3:184297387 5'GT 184297387 Upstream 46bp
chr15 50528136 50528136 1 + G A SKCM 50528133 + 50528113 50528153 41 TCAGGACACCATTGAGATCACTGGAACTTTTAAACACCGCA TCAGGACACCATTGAGATCACTGAAACTTTTAAACACCGCA < 41bp 0.718718646552544 0.495012797987866 0.006954342 0.03470859 prediction 0.437437293105088 Functional Loss - SLC27A2 ENSG00000140284 CDS Human protein_coding chr15:50528133 chr15:50528136 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_82855 0 0 0 0 1 SLC27A2 chr15:50528117 3'AG 50528117 Downstream 20bp
chr10 99991401 99991401 1 + G A COAD 99991398 + 99991378 99991418 41 TTGAAATTTATGACTTTCCCCAAGAATTTCATACTGAAGAC TTGAAATTTATGACTTTCCCCAAAAATTTCATACTGAAGAC < 41bp 0.762350222465599 0.543631796212296 0.04042107 0.034058273 prediction 0.437436852506606 Functional Loss - R3HCC1L ENSG00000166024 CDS Human protein_coding chr10:99991398 chr10:99991401 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_82856 0 0 1 1 1 R3HCC1L chr10:99991444 5'GT 99991444 Upstream 44bp
chr12 51449947 51449947 1 + A C rs34441047 51449946 + 51449926 51449966 41 GATACAGCGTGGTACCCACCCAGCAATACATGATATCTTGG GATACAGCGTGGTACCCACCCCGCAATACATGATATCTTGG < 41bp 0.718716702232953 0.467239907099117 0.31257778 0.11318368 prediction 0.437433404465906 Functional Loss - LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51449946 chr12:51449947 synonymous SNV . 0 22 hm5C_associated_SNPs_82857 0 0 0 1 2 LETMD1 chr12:51449927 3'AG 51449927 Downstream 21bp
chr12 51449947 51449947 1 + A C rs34441047 51449946 + 51449926 51449966 41 GATACAGCGTGGTACCCACCCAGCAATACATGATATCTTGG GATACAGCGTGGTACCCACCCCGCAATACATGATATCTTGG < 41bp 0.718716702232953 0.467239907099117 0.31257778 0.11318368 prediction 0.437433404465906 Functional Loss - LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51449946 chr12:51449947 synonymous SNV . 0 22 hm5C_associated_SNPs_82857 0 0 0 1 2 LETMD1 chr12:51450028 5'GT 51450028 Upstream 82bp
chr12 51449948 51449948 1 + G T COAD 51449946 + 51449926 51449966 41 GATACAGCGTGGTACCCACCCAGCAATACATGATATCTTGG GATACAGCGTGGTACCCACCCATCAATACATGATATCTTGG < 41bp 0.718716702232953 0.386185627463903 0.31257778 0.11823261 prediction 0.437433404465906 Functional Loss - LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51449946 chr12:51449948 nonsynonymous SNV 0.295 0 23 hm5C_associated_SNPs_82858 0 0 0 1 2 LETMD1 chr12:51449927 3'AG 51449927 Downstream 22bp
chr12 51449948 51449948 1 + G T COAD 51449946 + 51449926 51449966 41 GATACAGCGTGGTACCCACCCAGCAATACATGATATCTTGG GATACAGCGTGGTACCCACCCATCAATACATGATATCTTGG < 41bp 0.718716702232953 0.386185627463903 0.31257778 0.11823261 prediction 0.437433404465906 Functional Loss - LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51449946 chr12:51449948 nonsynonymous SNV 0.295 0 23 hm5C_associated_SNPs_82858 0 0 0 1 2 LETMD1 chr12:51450028 5'GT 51450028 Upstream 81bp
chr2 238978070 238978070 1 + G A UCEC 238978067 + 238978047 238978087 41 TCATTACTTCCTCGGTGGAACACGACTCCATCCGGCTGCCC TCATTACTTCCTCGGTGGAACACAACTCCATCCGGCTGCCC < 41bp 0.797465306306433 0.578748650662151 0.0474374 0.037442893 prediction 0.437433311288565 Functional Loss - SCLY ENSG00000132330 CDS Human protein_coding chr2:238978067 chr2:238978070 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_82859 0 0 1 0 1 SCLY chr2:238978118 5'GT 238978118 Upstream 49bp
chr19 49671550 49671550 1 + G A STAD 49671547 + 49671527 49671567 41 TGTCACTGGGGGTCTGCACACGGGCATCGGCCGGCATGTTG TGTCACTGGGGGTCTGCACACGGACATCGGCCGGCATGTTG < 41bp 0.799166050543602 0.580449893608526 0.82075894 0.36401242 prediction 0.437432313870152 Functional Loss - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49671547 chr19:49671550 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_82860 0 0 1 0 1 TRPM4 chr19:49671517 3'AG 49671517 Downstream 34bp
chr10 74886457 74886457 1 + C T UCEC 74886454 + 74886434 74886474 41 AAAGTGTGGAAGAGACCATCCGCCGAGAAGTTGCAGAAGAG AAAGTGTGGAAGAGACCATCCGCTGAGAAGTTGCAGAAGAG < 41bp 0.721660217684655 0.502946358319217 0.14249209 0.089674085 prediction 0.437427718730876 Functional Loss - NUDT13 ENSG00000166321 CDS Human protein_coding chr10:74886454 chr10:74886457 stopgain 0.190 1 24 hm5C_associated_SNPs_82861 0 0 1 1 2 NUDT13 chr10:74886393 3'AG 74886393 Downstream 65bp
chr10 74886457 74886457 1 + C T UCEC 74886454 + 74886434 74886474 41 AAAGTGTGGAAGAGACCATCCGCCGAGAAGTTGCAGAAGAG AAAGTGTGGAAGAGACCATCCGCTGAGAAGTTGCAGAAGAG < 41bp 0.721660217684655 0.502946358319217 0.14249209 0.089674085 prediction 0.437427718730876 Functional Loss - NUDT13 ENSG00000166321 CDS Human protein_coding chr10:74886454 chr10:74886457 stopgain 0.190 1 24 hm5C_associated_SNPs_82861 0 0 1 1 2 NUDT13 chr10:74886431 3'AG 74886431 Downstream 27bp
chr19 58189582 58189582 1 + G A CESC 58189579 + 58189559 58189599 41 GAACAGTTCTTCGAAAACTACTCGAGTAAATGAAAATATTA GAACAGTTCTTCGAAAACTACTCAAGTAAATGAAAATATTA < 41bp 0.722020573958011 0.50330784655396 0.31632537 0.09700045 prediction 0.437425454808101 Functional Loss - ZSCAN4 ENSG00000180532 CDS Human protein_coding chr19:58189579 chr19:58189582 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_82862 0 0 0 0 1 ZSCAN4 chr19:58189534 3'AG 58189534 Downstream 49bp
chr17 48738440 48738440 1 + G T UCEC 48738438 + 48738418 48738458 41 GTGCCTGCTTCAAGCTTATCCAGGACCTGCTCTCCTTCATC GTGCCTGCTTCAAGCTTATCCATGACCTGCTCTCCTTCATC < 41bp 0.718711140740785 0.355604087906166 0.14291948 0.02310142 prediction 0.437422281481571 Functional Loss - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48738438 chr17:48738440 stopgain 0.953 4 23 hm5C_associated_SNPs_82863 0 0 0 0 1 ABCC3 chr17:48738475 5'GT 48738475 Upstream 36bp
chr11 44072928 44072928 1 + G T UCEC 44072924 + 44072904 44072944 41 CGGTTCCTGACCTACTACTGCAGGGCACCTACCCGACTTGA CGGTTCCTGACCTACTACTGCAGGTCACCTACCCGACTTGA < 41bp 0.739057718785924 0.520346688775595 0.9154794 0.8375827 prediction 0.43742206002066 Functional Loss - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44072924 chr11:44072928 nonsynonymous SNV 0.277 1 25 hm5C_associated_SNPs_82864 0 0 0 0 2 ACCSL chr11:44072885 3'AG 44072885 Downstream 44bp
chr11 44072928 44072928 1 + G T UCEC 44072924 + 44072904 44072944 41 CGGTTCCTGACCTACTACTGCAGGGCACCTACCCGACTTGA CGGTTCCTGACCTACTACTGCAGGTCACCTACCCGACTTGA < 41bp 0.739057718785924 0.520346688775595 0.9154794 0.8375827 prediction 0.43742206002066 Functional Loss - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44072924 chr11:44072928 nonsynonymous SNV 0.277 1 25 hm5C_associated_SNPs_82864 0 0 0 0 2 ACCSL chr11:44072954 5'GT 44072954 Upstream 27bp
chr9 101900276 101900276 1 + G A SKCM 101900273 + 101900253 101900293 41 TGCTGTTAAGATATTCTCCTCTAGAGAAGAACGTTCGTGGT TGCTGTTAAGATATTCTCCTCTAAAGAAGAACGTTCGTGGT < 41bp 0.778436826044914 0.559729100979332 0.52508146 0.22427392 prediction 0.437415450131165 Functional Loss - TGFBR1 ENSG00000106799 CDS Human protein_coding chr9:101900273 chr9:101900276 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_82869 0 0 0 0 1 TGFBR1 chr9:101900371 5'GT 101900371 Upstream 96bp
chr16 4745048 4745048 1 + G A UCEC 4745045 + 4745025 4745065 41 CTGAGCAACGCCTTCGTGAGCACGGCTAAGTGCCAGCTCCT CTGAGCAACGCCTTCGTGAGCACAGCTAAGTGCCAGCTCCT < 41bp 0.785742557792727 0.567035247282091 0.81575334 0.36753044 prediction 0.437414621021272 Functional Loss - NUDT16L1 ENSG00000168101 CDS Human protein_coding chr16:4745045 chr16:4745048 nonsynonymous SNV 0.409 0 24 hm5C_associated_SNPs_82870 0 0 1 0 1 NUDT16L1 chr16:4744959 3'AG 4744959 Downstream 90bp
chr2 27259581 27259581 1 + G A UCEC 27259578 + 27259558 27259598 41 CTTTTACCCCTGCAGTGTGGCTGGGGATCATGCTGCCTGTG CTTTTACCCCTGCAGTGTGGCTGAGGATCATGCTGCCTGTG < 41bp 0.810715506515345 0.592009244101087 0.44403985 0.23181647 prediction 0.437412524828514 Functional Loss - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27259578 chr2:27259581 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_82871 0 0 1 2 1 TMEM214 chr2:27259654 5'GT 27259654 Upstream 74bp
chr1 76199277 76199277 1 + A C rs74090726 76199276 + 76199256 76199296 41 AGAATTGGCTTATGGATGTACAGGGGTTCAGACTGCTATTG AGAATTGGCTTATGGATGTACCGGGGTTCAGACTGCTATTG < 41bp 0.790551534606936 0.57184538564869 0.89408123 0.91911995 prediction 0.437412297916492 Functional Loss - ACADM ENSG00000117054 CDS Human protein_coding chr1:76199276 chr1:76199277 synonymous SNV . 0 22 hm5C_associated_SNPs_82872 3 0 1 0 2 ACADM chr1:76199213 3'AG 76199213 Downstream 65bp
chr1 76199277 76199277 1 + A C rs74090726 76199276 + 76199256 76199296 41 AGAATTGGCTTATGGATGTACAGGGGTTCAGACTGCTATTG AGAATTGGCTTATGGATGTACCGGGGTTCAGACTGCTATTG < 41bp 0.790551534606936 0.57184538564869 0.89408123 0.91911995 prediction 0.437412297916492 Functional Loss - ACADM ENSG00000117054 CDS Human protein_coding chr1:76199276 chr1:76199277 synonymous SNV . 0 22 hm5C_associated_SNPs_82872 3 0 1 0 2 ACADM chr1:76199313 5'GT 76199313 Upstream 37bp
chr12 53823280 53823280 1 + G A CESC 53823277 + 53823257 53823297 41 GCCCACCGAGATCTGAGCAGCCAGAATGTGCTCATTCGGGA GCCCACCGAGATCTGAGCAGCCAAAATGTGCTCATTCGGGA < 41bp 0.718702483340171 0.485006716323373 0.13800606 0.17442617 prediction 0.437404966680343 Functional Loss - AMHR2 ENSG00000135409 CDS Human protein_coding chr12:53823277 chr12:53823280 synonymous SNV . 0 24 hm5C_associated_SNPs_82875 0 0 0 0 1 AMHR2 chr12:53823237 3'AG 53823237 Downstream 44bp
chr8 11295636 11295636 1 + G A rs150580860 11295633 + 11295613 11295653 41 AGCCAGGCGGCCAGTGGAGGCCGGTAGTGCTGAATGGACAT AGCCAGGCGGCCAGTGGAGGCCGATAGTGCTGAATGGACAT < 41bp 0.71869788029552 0.476407691310981 0.3832324 0.14061686 prediction 0.437395760591041 Functional Loss - FAM167A-AS1 ENSG00000184608 CDS Human antisense chr8:11295633 chr8:11295636 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_82876 0 0 0 0 2 FAM167A-AS1 chr8:11295549 3'AG 11295549 Downstream 88bp
chr8 11295636 11295636 1 + G A rs150580860 11295633 + 11295613 11295653 41 AGCCAGGCGGCCAGTGGAGGCCGGTAGTGCTGAATGGACAT AGCCAGGCGGCCAGTGGAGGCCGATAGTGCTGAATGGACAT < 41bp 0.71869788029552 0.476407691310981 0.3832324 0.14061686 prediction 0.437395760591041 Functional Loss - FAM167A-AS1 ENSG00000184608 CDS Human antisense chr8:11295633 chr8:11295636 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_82876 0 0 0 0 2 FAM167A-AS1 chr8:11295719 5'GT 11295719 Upstream 84bp
chr3 183860628 183860628 1 + G C rs111933069 183860624 + 183860604 183860644 41 AAGTGAGCAAAGTATGGATTCTGAGGAGCCGGACAGCCGGG AAGTGAGCAAAGTATGGATTCTGACGAGCCGGACAGCCGGG < 41bp 0.71869777422711 0.420753080206175 0.2866459 0.13157138 prediction 0.437395548454219 Functional Loss - EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183860624 chr3:183860628 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_82877 0 0 1 0 2 EIF2B5 chr3:183860567 3'AG 183860567 Downstream 62bp
chr3 183860628 183860628 1 + G C rs111933069 183860624 + 183860604 183860644 41 AAGTGAGCAAAGTATGGATTCTGAGGAGCCGGACAGCCGGG AAGTGAGCAAAGTATGGATTCTGACGAGCCGGACAGCCGGG < 41bp 0.71869777422711 0.420753080206175 0.2866459 0.13157138 prediction 0.437395548454219 Functional Loss - EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183860624 chr3:183860628 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_82877 0 0 1 0 2 EIF2B5 chr3:183860674 5'GT 183860674 Upstream 47bp
chr13 113973918 113973918 1 + C T UCEC 113973915 + 113973895 113973935 41 GCGGCACCAACGGGACCTGCCTGCTGGCCAGCATGGGGCTG GCGGCACCAACGGGACCTGCCTGTTGGCCAGCATGGGGCTG < 41bp 0.736437101261173 0.517742396215804 0.06610367 0.069928885 prediction 0.437389410090738 Functional Loss - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113973915 chr13:113973918 synonymous SNV . 0 24 hm5C_associated_SNPs_82878 0 0 1 0 1 LAMP1 chr13:113973971 5'GT 113973971 Upstream 54bp
chr12 69993770 69993770 1 + C T HNSC 69993767 + 69993747 69993787 41 ATTCTGCGTGTGGACAACATCATCAAAGCGGCACCCAGGTA ATTCTGCGTGTGGACAACATCATTAAAGCGGCACCCAGGTA < 41bp 0.724391050137219 0.505696649882754 0.1548852 0.22671953 prediction 0.437388800508931 Functional Loss - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69993767 chr12:69993770 synonymous SNV . 0 24 hm5C_associated_SNPs_82879 0 0 1 0 1 CCT2 chr12:69993784 5'GT 69993784 Upstream 15bp
chr12 109877530 109877530 1 + C T UCEC 109877527 + 109877507 109877547 41 GGAAGAATTACATCTTGAATCTCCGGTATCACCTTCCAAAG GGAAGAATTACATCTTGAATCTCTGGTATCACCTTCCAAAG < 41bp 0.74055873549039 0.521870458055695 0.01362741 0.013687551 prediction 0.437376554869388 Functional Loss - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109877527 chr12:109877530 nonsynonymous SNV 0.544 4 24 hm5C_associated_SNPs_82881 0 0 0 0 2 MYO1H chr12:109877436 3'AG 109877436 Downstream 95bp
chr12 109877530 109877530 1 + C T UCEC 109877527 + 109877507 109877547 41 GGAAGAATTACATCTTGAATCTCCGGTATCACCTTCCAAAG GGAAGAATTACATCTTGAATCTCTGGTATCACCTTCCAAAG < 41bp 0.74055873549039 0.521870458055695 0.01362741 0.013687551 prediction 0.437376554869388 Functional Loss - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109877527 chr12:109877530 nonsynonymous SNV 0.544 4 24 hm5C_associated_SNPs_82881 0 0 0 0 2 MYO1H chr12:109877595 5'GT 109877595 Upstream 66bp
chr19 54418665 54418665 1 + C T SKCM 54418663 + 54418643 54418683 41 TCCCCATGGTCAGCCTCTTCCTCGTGTTCACGGCCTTCGTC TCCCCATGGTCAGCCTCTTCCTTGTGTTCACGGCCTTCGTC < 41bp 0.849064689948922 0.630376788703603 0.07323778 0.054920286 prediction 0.437375802490638 Functional Loss - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54418663 chr19:54418665 synonymous SNV . 0 23 hm5C_associated_SNPs_82882 0 0 0 0 2 CACNG7 chr19:54418619 3'AG 54418619 Downstream 47bp
chr19 54418665 54418665 1 + C T SKCM 54418663 + 54418643 54418683 41 TCCCCATGGTCAGCCTCTTCCTCGTGTTCACGGCCTTCGTC TCCCCATGGTCAGCCTCTTCCTTGTGTTCACGGCCTTCGTC < 41bp 0.849064689948922 0.630376788703603 0.07323778 0.054920286 prediction 0.437375802490638 Functional Loss - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54418663 chr19:54418665 synonymous SNV . 0 23 hm5C_associated_SNPs_82882 0 0 0 0 2 CACNG7 chr19:54418759 5'GT 54418759 Upstream 95bp
chr1 94016590 94016590 1 + C T UCEC 94016588 + 94016568 94016608 41 AGGTGACGGATGGACAAGAGCTCGGAGACAGAACGGTGAAG AGGTGACGGATGGACAAGAGCTTGGAGACAGAACGGTGAAG < 41bp 0.718687231732382 0.450605616827253 0.18660006 0.24102053 prediction 0.437374463464764 Functional Loss - FNBP1L ENSG00000137942 CDS Human protein_coding chr1:94016588 chr1:94016590 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_82883 0 0 1 0 3 FNBP1L chr1:94016504 3'AG 94016504 Downstream 87bp
chr1 94016590 94016590 1 + C T UCEC 94016588 + 94016568 94016608 41 AGGTGACGGATGGACAAGAGCTCGGAGACAGAACGGTGAAG AGGTGACGGATGGACAAGAGCTTGGAGACAGAACGGTGAAG < 41bp 0.718687231732382 0.450605616827253 0.18660006 0.24102053 prediction 0.437374463464764 Functional Loss - FNBP1L ENSG00000137942 CDS Human protein_coding chr1:94016588 chr1:94016590 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_82883 0 0 1 0 3 FNBP1L chr1:94016558 3'AG 94016558 Downstream 33bp
chr1 94016590 94016590 1 + C T UCEC 94016588 + 94016568 94016608 41 AGGTGACGGATGGACAAGAGCTCGGAGACAGAACGGTGAAG AGGTGACGGATGGACAAGAGCTTGGAGACAGAACGGTGAAG < 41bp 0.718687231732382 0.450605616827253 0.18660006 0.24102053 prediction 0.437374463464764 Functional Loss - FNBP1L ENSG00000137942 CDS Human protein_coding chr1:94016588 chr1:94016590 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_82883 0 0 1 0 3 FNBP1L chr1:94016662 5'GT 94016662 Upstream 73bp
chr12 29614807 29614807 1 + C T rs12305672 29614804 + 29614784 29614824 41 CACCTGGCAGAAATCTTTCTCTCCAGATGCTGCAAAGCCAG CACCTGGCAGAAATCTTTCTCTCTAGATGCTGCAAAGCCAG < 41bp 0.746962716015039 0.528275577366589 0.93573576 0.47321022 prediction 0.437374277296899 Functional Loss - OVCH1 ENSG00000187950;ENSG00000257599 CDS Human antisense chr12:29614804 chr12:29614807 nonsynonymous SNV 0.113 4 24 hm5C_associated_SNPs_82884 0 0 0 0 2 OVCH1-AS1 chr12:29614729 3'AG 29614729 Downstream 79bp
chr12 29614807 29614807 1 + C T rs12305672 29614804 + 29614784 29614824 41 CACCTGGCAGAAATCTTTCTCTCCAGATGCTGCAAAGCCAG CACCTGGCAGAAATCTTTCTCTCTAGATGCTGCAAAGCCAG < 41bp 0.746962716015039 0.528275577366589 0.93573576 0.47321022 prediction 0.437374277296899 Functional Loss - OVCH1 ENSG00000187950;ENSG00000257599 CDS Human other chr12:29614804 chr12:29614807 nonsynonymous SNV 0.113 4 24 hm5C_associated_SNPs_82884 0 0 0 0 2 OVCH1 chr12:29614867 5'GT 29614867 Upstream 61bp
chrX 30268617 30268617 1 + C T LUSC 30268615 + 30268595 30268635 41 CCTGACCACAGCCATCATGCCTCGGGGTCAGAAGAGTAAGC CCTGACCACAGCCATCATGCCTTGGGGTCAGAAGAGTAAGC < 41bp 0.824977380642287 0.606290670855083 0.28119823 0.13740945 prediction 0.437373419574408 Functional Loss - MAGEB1 ENSG00000214107 CDS Human protein_coding chrX:30268615 chrX:30268617 nonsynonymous SNV 0.930 3 23 hm5C_associated_SNPs_82885 0 0 1 0 1 MAGEB1 chrX:30268551 3'AG 30268551 Downstream 67bp
chr12 72338117 72338117 1 + G A STAD 72338114 + 72338094 72338134 41 TCATATTGAATCCAGGAAATCTCGGCGAAGAAGTTCTGAGG TCATATTGAATCCAGGAAATCTCAGCGAAGAAGTTCTGAGG < 41bp 0.772670996166844 0.553985393786991 0.53301597 0.12195471 prediction 0.437371204759706 Functional Loss - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72338114 chr12:72338117 nonsynonymous SNV 0.881 2 24 hm5C_associated_SNPs_82887 0 0 0 0 1 TPH2 chr12:72338074 3'AG 72338074 Downstream 44bp
chr3 51751819 51751819 1 + C T BLCA 51751817 + 51751797 51751837 41 AGTGCTGCTGCCAGGGCCAGCTCCAGCCTTGGCCAAGGTCA AGTGCTGCTGCCAGGGCCAGCTTCAGCCTTGGCCAAGGTCA < 41bp 0.718684681804803 0.45634938214606 0.8790996 0.38821515 prediction 0.437369363609606 Functional Loss - GRM2 ENSG00000164082 CDS Human protein_coding chr3:51751817 chr3:51751819 nonsynonymous SNV 0.692 3 23 hm5C_associated_SNPs_82888 0 0 0 0 1 GRM2 chr3:51751833 5'GT 51751833 Upstream 15bp
chrX 69456923 69456923 1 + G C BRCA 69456919 + 69456899 69456939 41 GAAGACAAAGGACCTATCACCTGAGCACAACTACCTCATGG GAAGACAAAGGACCTATCACCTGACCACAACTACCTCATGG < 41bp 0.718673046690576 0.4103486272199 0.14909542 0.15074432 prediction 0.437346093381152 Functional Loss - AWAT1 ENSG00000204195 CDS Human protein_coding chrX:69456919 chrX:69456923 nonsynonymous SNV 0.437 0 25 hm5C_associated_SNPs_82890 0 0 0 0 1 AWAT1 chrX:69456894 3'AG 69456894 Downstream 30bp
chr10 82331292 82331292 1 + G A rs72805712 82331289 + 82331269 82331309 41 AAAGTGGAGATGGAAGACCGCAAGGCTGCCAAAGTCCTGGA AAAGTGGAGATGGAAGACCGCAAAGCTGCCAAAGTCCTGGA < 41bp 0.795142496806345 0.576473126079144 0.27115852 0.11300525 prediction 0.437338741454402 Functional Loss - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82331289 chr10:82331292 synonymous SNV . 0 24 hm5C_associated_SNPs_82892 0 0 0 0 1 SH2D4B chr10:82331334 5'GT 82331334 Upstream 43bp
chr11 89891358 89891358 1 + G A PAAD 89891355 + 89891335 89891375 41 TGAAGAAGGAGTGGGAATCCCCCGAATACCTGTACATCCCA TGAAGAAGGAGTGGGAATCCCCCAAATACCTGTACATCCCA < 41bp 0.747590827842211 0.52892278304797 0.07150799 0.09767252 prediction 0.437336089588481 Functional Loss - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89891355 chr11:89891358 nonsynonymous SNV 0.976 0 24 hm5C_associated_SNPs_82893 0 0 0 0 2 NAALAD2 chr11:89891313 3'AG 89891313 Downstream 46bp
chr11 89891358 89891358 1 + G A PAAD 89891355 + 89891335 89891375 41 TGAAGAAGGAGTGGGAATCCCCCGAATACCTGTACATCCCA TGAAGAAGGAGTGGGAATCCCCCAAATACCTGTACATCCCA < 41bp 0.747590827842211 0.52892278304797 0.07150799 0.09767252 prediction 0.437336089588481 Functional Loss - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89891355 chr11:89891358 nonsynonymous SNV 0.976 0 24 hm5C_associated_SNPs_82893 0 0 0 0 2 NAALAD2 chr11:89891406 5'GT 89891406 Upstream 49bp
chr20 33587427 33587427 1 + G A BRCA 33587424 + 33587404 33587444 41 GTCTCAGTGGGAAGAGCATCCAGGAACTGGAGAAAACCAAG GTCTCAGTGGGAAGAGCATCCAGAAACTGGAGAAAACCAAG < 41bp 0.718663086024373 0.489256385562461 0.72876316 0.6781218 prediction 0.437326172048746 Functional Loss - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33587424 chr20:33587427 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_82896 0 0 0 0 2 MYH7B chr20:33587374 3'AG 33587374 Downstream 54bp
chr20 33587427 33587427 1 + G A BRCA 33587424 + 33587404 33587444 41 GTCTCAGTGGGAAGAGCATCCAGGAACTGGAGAAAACCAAG GTCTCAGTGGGAAGAGCATCCAGAAACTGGAGAAAACCAAG < 41bp 0.718663086024373 0.489256385562461 0.72876316 0.6781218 prediction 0.437326172048746 Functional Loss - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33587424 chr20:33587427 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_82896 0 0 0 0 2 MYH7B chr20:33587498 5'GT 33587498 Upstream 72bp
chr4 81207508 81207508 1 + G A SKCM 81207505 + 81207485 81207525 41 TTCACAGATGACTGCAAGTTCAGGGAGCGTTTTCAAGAAAA TTCACAGATGACTGCAAGTTCAGAGAGCGTTTTCAAGAAAA < 41bp 0.755152965384993 0.536492995742553 0.7151567 0.3054235 prediction 0.43731993928488 Functional Loss - FGF5 ENSG00000138675 CDS Human protein_coding chr4:81207505 chr4:81207508 synonymous SNV . 0 24 hm5C_associated_SNPs_82899 0 0 0 0 1 FGF5 chr4:81207479 3'AG 81207479 Downstream 30bp
chr2 158991286 158991286 1 + G A UCEC 158991283 + 158991263 158991303 41 CTGTGGTCTGTGTGACACTTCTCGACAGACTCGACTGTGAT CTGTGGTCTGTGTGACACTTCTCAACAGACTCGACTGTGAT < 41bp 0.769846723600087 0.551191750006765 0.6662359 0.27758503 prediction 0.437309947186643 Functional Loss - UPP2 ENSG00000007001 CDS Human protein_coding chr2:158991283 chr2:158991286 nonsynonymous SNV 0.980 1 24 hm5C_associated_SNPs_82901 0 0 0 0 1 UPP2 chr2:158991260 3'AG 158991260 Downstream 27bp
chr7 89912361 89912361 1 + C T UCEC 89912358 + 89912338 89912378 41 TTTGTGAAAAGGGAACAATTCAGCAAATGATAGGTAAAATA TTTGTGAAAAGGGAACAATTCAGTAAATGATAGGTAAAATA < 41bp 0.745333679939705 0.52668529923921 0.20173106 0.10180792 prediction 0.43729676140099 Functional Loss - CFAP69 ENSG00000105792 CDS Human protein_coding chr7:89912358 chr7:89912361 stopgain 0.998 1 24 hm5C_associated_SNPs_82904 0 0 0 1 1 CFAP69 chr7:89912370 5'GT 89912370 Upstream 10bp
chr16 4382406 4382406 1 + T C UCEC 4382405 + 4382385 4382425 41 CTCTGCACAGGGAGCTGGGCCTGGTGGATGACAGCCCCACA CTCTGCACAGGGAGCTGGGCCCGGTGGATGACAGCCCCACA < 41bp 0.724823595968292 0.506178596574727 0.3391022 0.40140575 prediction 0.437289998787131 Functional Loss - GLIS2 ENSG00000126603 CDS Human protein_coding chr16:4382405 chr16:4382406 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_82905 0 0 0 0 1 GLIS2 chr16:4382453 5'GT 4382453 Upstream 48bp
chr17 26820746 26820746 1 + C T LUAD 26820744 + 26820724 26820764 41 CCTGGTGCTGCTCTGGTTCACCCGGGAGCCGGGCTTTTTTC CCTGGTGCTGCTCTGGTTCACCTGGGAGCCGGGCTTTTTTC < 41bp 0.718636916713649 0.44623523479803 0.2629716 0.22511482 prediction 0.437273833427299 Functional Loss - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26820744 chr17:26820746 nonsynonymous SNV 0.950 4 23 hm5C_associated_SNPs_82907 0 0 0 0 1 SLC13A2 chr17:26820807 5'GT 26820807 Upstream 62bp
chr6 47563658 47563658 1 + G A SKCM 47563655 + 47563635 47563675 41 GCAGCTCCACAAGTCCCACCCAAGAAACCTACTCCACCTAC GCAGCTCCACAAGTCCCACCCAAAAAACCTACTCCACCTAC < 41bp 0.757536237254028 0.538903617156095 0.5318167 0.13895401 prediction 0.437265240195866 Functional Loss - CD2AP ENSG00000198087 CDS Human protein_coding chr6:47563655 chr6:47563658 synonymous SNV . 0 24 hm5C_associated_SNPs_82908 0 0 1 0 1 CD2AP chr6:47563597 3'AG 47563597 Downstream 62bp
chr11 65721129 65721129 1 + G A rs147122262 65721126 + 65721106 65721146 41 GGACACAGCATGTACAGCGGCAGGTGGCCCACTGCCTGGCA GGACACAGCATGTACAGCGGCAGATGGCCCACTGCCTGGCA < 41bp 0.798822492079464 0.580195341326459 0.4428293 0.21799621 prediction 0.43725430150601 Functional Loss - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65721126 chr11:65721129 unknown 0.977 2 24 hm5C_associated_SNPs_82910 0 0 0 0 2 TSGA10IP chr11:65721038 3'AG 65721038 Downstream 92bp
chr11 65721129 65721129 1 + G A rs147122262 65721126 + 65721106 65721146 41 GGACACAGCATGTACAGCGGCAGGTGGCCCACTGCCTGGCA GGACACAGCATGTACAGCGGCAGATGGCCCACTGCCTGGCA < 41bp 0.798822492079464 0.580195341326459 0.4428293 0.21799621 prediction 0.43725430150601 Functional Loss - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65721126 chr11:65721129 unknown 0.977 2 24 hm5C_associated_SNPs_82910 0 0 0 0 2 TSGA10IP chr11:65721208 5'GT 65721208 Upstream 80bp
chr8 37633451 37633451 1 + C T CESC 37633448 + 37633428 37633468 41 TCTGTCAGCTGTTATTGTCCCTCCGGGAGGAGCTGTGTAAA TCTGTCAGCTGTTATTGTCCCTCTGGGAGGAGCTGTGTAAA < 41bp 0.718618388400392 0.484613605844295 0.26681244 0.22617966 prediction 0.437236776800785 Functional Loss - PLPBP ENSG00000147471 CDS Human protein_coding chr8:37633448 chr8:37633451 nonsynonymous SNV 0.748 4 24 hm5C_associated_SNPs_82914 0 0 0 0 2 PLPBP chr8:37633436 3'AG 37633436 Downstream 16bp
chr8 37633451 37633451 1 + C T CESC 37633448 + 37633428 37633468 41 TCTGTCAGCTGTTATTGTCCCTCCGGGAGGAGCTGTGTAAA TCTGTCAGCTGTTATTGTCCCTCTGGGAGGAGCTGTGTAAA < 41bp 0.718618388400392 0.484613605844295 0.26681244 0.22617966 prediction 0.437236776800785 Functional Loss - PLPBP ENSG00000147471 CDS Human protein_coding chr8:37633448 chr8:37633451 nonsynonymous SNV 0.748 4 24 hm5C_associated_SNPs_82914 0 0 0 0 2 PLPBP chr8:37633534 5'GT 37633534 Upstream 84bp
chr10 135165758 135165758 1 + G A UCEC 135165755 + 135165735 135165775 41 ATGTGCTTGTCCCTAGGCACCAAGGCCTGGATGGAGACCGA ATGTGCTTGTCCCTAGGCACCAAAGCCTGGATGGAGACCGA < 41bp 0.749142629216942 0.530527081074754 0.24685475 0.08381593 prediction 0.437231096284375 Functional Loss - PRAP1 ENSG00000165828;ENSG00000198546 CDS Human other chr10:135165755 chr10:135165758 synonymous SNV . 0 24 hm5C_associated_SNPs_82916 0 0 1 0 1 PRAP1 chr10:135165751 3'AG 135165751 Downstream 8bp
chr20 13134686 13134686 1 + G A SKCM 13134683 + 13134663 13134703 41 ACAGCAACTTGCGAAAAACACAAGATACTTCAGACAAAGAC ACAGCAACTTGCGAAAAACACAAAATACTTCAGACAAAGAC < 41bp 0.746779211379631 0.528163831508831 0.41952762 0.25562188 prediction 0.437230759741599 Functional Loss - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13134683 chr20:13134686 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_82917 0 0 0 0 1 SPTLC3 chr20:13134650 3'AG 13134650 Downstream 37bp
chr4 944293 944293 1 + G C LGG 944289 + 944269 944309 41 TTTCTCATCGTGACAGTGGCCTGGGCAGCACACACAAGGTG TTTCTCATCGTGACAGTGGCCTGGCCAGCACACACAAGGTG < 41bp 0.748459540291809 0.529846211901033 0.28142208 0.23707193 prediction 0.437226656781551 Functional Loss - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:944289 chr4:944293 nonsynonymous SNV 0.950 3 25 hm5C_associated_SNPs_82918 0 0 1 0 2 TMEM175 chr4:944209 3'AG 944209 Downstream 85bp
chr4 944293 944293 1 + G C LGG 944289 + 944269 944309 41 TTTCTCATCGTGACAGTGGCCTGGGCAGCACACACAAGGTG TTTCTCATCGTGACAGTGGCCTGGCCAGCACACACAAGGTG < 41bp 0.748459540291809 0.529846211901033 0.28142208 0.23707193 prediction 0.437226656781551 Functional Loss - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:944289 chr4:944293 nonsynonymous SNV 0.950 3 25 hm5C_associated_SNPs_82918 0 0 1 0 2 TMEM175 chr4:944306 5'GT 944306 Upstream 14bp
chr17 46002400 46002400 1 + C T STAD 46002398 + 46002378 46002418 41 CCCTGGCCGGAGAGACCCAGCCCGGGGAGAAGCGGCGCCGC CCCTGGCCGGAGAGACCCAGCCTGGGGAGAAGCGGCGCCGC < 41bp 0.835664969257194 0.617052293738009 0.4801064 0.6936358 prediction 0.43722535103837 Functional Loss - SP2 ENSG00000167182 CDS Human protein_coding chr17:46002398 chr17:46002400 synonymous SNV . 0 23 hm5C_associated_SNPs_82919 0 0 0 0 1 SP2 chr17:46002459 5'GT 46002459 Upstream 60bp
chr1 222919922 222919922 1 + A T LUSC 222919918 + 222919898 222919938 41 ACGGTTTCCAGCAGTTAGACCTAGAGAAGAGTGTACCTTCC ACGGTTTCCAGCAGTTAGACCTAGTGAAGAGTGTACCTTCC < 41bp 0.718612209222639 0.402757136810869 0.18750757 0.32268542 prediction 0.437224418445278 Functional Loss - FAM177B ENSG00000197520 CDS Human protein_coding chr1:222919918 chr1:222919922 nonsynonymous SNV 0.573 2 25 hm5C_associated_SNPs_82920 0 0 0 0 1 FAM177B chr1:222919873 3'AG 222919873 Downstream 50bp
chr19 5110733 5110733 1 + C T STAD 5110731 + 5110711 5110751 41 TGGAAGCAGGGCAAGGACCTCACGGTGCTGGACCACACGCG TGGAAGCAGGGCAAGGACCTCATGGTGCTGGACCACACGCG < 41bp 0.820147021327286 0.601536579034583 0.88342977 0.84728837 prediction 0.437220884585407 Functional Loss - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5110731 chr19:5110733 nonsynonymous SNV 0.964 1 23 hm5C_associated_SNPs_82922 0 0 1 0 1 KDM4B chr19:5110829 5'GT 5110829 Upstream 97bp
chr6 155458649 155458649 1 + G A GBM 155458646 + 155458626 155458666 41 CAGGGGGTGGTCCGGAAGGCCGGGTGGCTCTTCTTCAAGCC CAGGGGGTGGTCCGGAAGGCCGGATGGCTCTTCTTCAAGCC < 41bp 0.791106754217799 0.572499695855176 0.89178133 0.7001958 prediction 0.437214116725244 Functional Loss - TIAM2 ENSG00000146426 CDS Human protein_coding chr6:155458646 chr6:155458649 synonymous SNV . 0 24 hm5C_associated_SNPs_82924 0 0 0 0 1 TIAM2 chr6:155458746 5'GT 155458746 Upstream 98bp
chr19 49841252 49841252 1 + C T OV 49841250 + 49841230 49841270 41 GGCACCAACCCCGAGGAGACCGCGGCCGAGGAGAGCTGGGA GGCACCAACCCCGAGGAGACCGTGGCCGAGGAGAGCTGGGA < 41bp 0.718606495720191 0.450225582683035 0.3478775 0.2119312 prediction 0.437212991440382 Functional Loss - CD37 ENSG00000104894 CDS Human protein_coding chr19:49841250 chr19:49841252 nonsynonymous SNV 0.157 2 23 hm5C_associated_SNPs_82925 0 0 1 0 2 CD37 chr19:49841182 3'AG 49841182 Downstream 71bp
chr19 49841252 49841252 1 + C T OV 49841250 + 49841230 49841270 41 GGCACCAACCCCGAGGAGACCGCGGCCGAGGAGAGCTGGGA GGCACCAACCCCGAGGAGACCGTGGCCGAGGAGAGCTGGGA < 41bp 0.718606495720191 0.450225582683035 0.3478775 0.2119312 prediction 0.437212991440382 Functional Loss - CD37 ENSG00000104894 CDS Human protein_coding chr19:49841250 chr19:49841252 nonsynonymous SNV 0.157 2 23 hm5C_associated_SNPs_82925 0 0 1 0 2 CD37 chr19:49841286 5'GT 49841286 Upstream 35bp
chr19 49841253 49841253 1 + G A UCEC 49841250 + 49841230 49841270 41 GGCACCAACCCCGAGGAGACCGCGGCCGAGGAGAGCTGGGA GGCACCAACCCCGAGGAGACCGCAGCCGAGGAGAGCTGGGA < 41bp 0.718606495720191 0.474911021020271 0.3478775 0.2139605 prediction 0.437212991440382 Functional Loss - CD37 ENSG00000104894 CDS Human protein_coding chr19:49841250 chr19:49841253 synonymous SNV . 0 24 hm5C_associated_SNPs_82926 0 0 1 0 2 CD37 chr19:49841182 3'AG 49841182 Downstream 72bp
chr19 49841253 49841253 1 + G A UCEC 49841250 + 49841230 49841270 41 GGCACCAACCCCGAGGAGACCGCGGCCGAGGAGAGCTGGGA GGCACCAACCCCGAGGAGACCGCAGCCGAGGAGAGCTGGGA < 41bp 0.718606495720191 0.474911021020271 0.3478775 0.2139605 prediction 0.437212991440382 Functional Loss - CD37 ENSG00000104894 CDS Human protein_coding chr19:49841250 chr19:49841253 synonymous SNV . 0 24 hm5C_associated_SNPs_82926 0 0 1 0 2 CD37 chr19:49841286 5'GT 49841286 Upstream 34bp
chr9 95766375 95766375 1 + G A SARC 95766372 + 95766352 95766392 41 TCCTCCATCCACCGCTTCCACGGGCAGTTCCTGCTGCCGGA TCCTCCATCCACCGCTTCCACGGACAGTTCCTGCTGCCGGA < 41bp 0.718601687663036 0.457620294933114 0.4687053 0.26125723 prediction 0.437203375326071 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95766372 chr9:95766375 synonymous SNV . 0 24 hm5C_associated_SNPs_82928 0 0 0 0 2 FGD3 chr9:95766283 3'AG 95766283 Downstream 93bp
chr9 95766375 95766375 1 + G A SARC 95766372 + 95766352 95766392 41 TCCTCCATCCACCGCTTCCACGGGCAGTTCCTGCTGCCGGA TCCTCCATCCACCGCTTCCACGGACAGTTCCTGCTGCCGGA < 41bp 0.718601687663036 0.457620294933114 0.4687053 0.26125723 prediction 0.437203375326071 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95766372 chr9:95766375 synonymous SNV . 0 24 hm5C_associated_SNPs_82928 0 0 0 0 2 FGD3 chr9:95766419 5'GT 95766419 Upstream 45bp
chr8 61497312 61497312 1 + G A UCEC 61497309 + 61497289 61497329 41 ACATTCAACCACTTGACAACCTGGTTAGAAGATGCCCGCCA ACATTCAACCACTTGACAACCTGATTAGAAGATGCCCGCCA < 41bp 0.718599156080701 0.493452905919619 0.28848615 0.09143224 prediction 0.437198312161402 Functional Loss - RAB2A ENSG00000104388 CDS Human protein_coding chr8:61497309 chr8:61497312 stopgain 1.000 1 24 hm5C_associated_SNPs_82929 0 0 1 0 2 RAB2A chr8:61497282 3'AG 61497282 Downstream 31bp
chr8 61497312 61497312 1 + G A UCEC 61497309 + 61497289 61497329 41 ACATTCAACCACTTGACAACCTGGTTAGAAGATGCCCGCCA ACATTCAACCACTTGACAACCTGATTAGAAGATGCCCGCCA < 41bp 0.718599156080701 0.493452905919619 0.28848615 0.09143224 prediction 0.437198312161402 Functional Loss - RAB2A ENSG00000104388 CDS Human protein_coding chr8:61497309 chr8:61497312 stopgain 1.000 1 24 hm5C_associated_SNPs_82929 0 0 1 0 2 RAB2A chr8:61497374 5'GT 61497374 Upstream 63bp
chr19 18451435 18451435 1 + A C rs570498910 18451431 + 18451411 18451451 41 GCGCGGCCGAGAGGCTGCAGCGGCAGCAGCTGTCGCGCCAG GCGCGGCCGAGAGGCTGCAGCGGCCGCAGCTGTCGCGCCAG < 41bp 0.912512199250781 0.693913321226853 0.91154474 0.90170383 prediction 0.437197756047856 Functional Loss - PGPEP1 ENSG00000130517 UTR5 Human protein_coding chr19:18451431 chr19:18451435 . . 0 25 hm5C_associated_SNPs_82930 0 0 1 0 1 PGPEP1 chr19:18451525 5'GT 18451525 Upstream 91bp
chr19 42791810 42791810 1 + G A UCEC 42791807 + 42791787 42791827 41 CAGGACAACCGGACCGTCAGCAAGATCCTGGGCGAGTGGTG CAGGACAACCGGACCGTCAGCAAAATCCTGGGCGAGTGGTG < 41bp 0.718598838903499 0.472718405561256 0.7624353 0.35320783 prediction 0.437197677806999 Functional Loss - CIC ENSG00000079432 CDS Human protein_coding chr19:42791807 chr19:42791810 synonymous SNV . 0 24 hm5C_associated_SNPs_82931 0 0 1 0 1 CIC chr19:42791879 5'GT 42791879 Upstream 70bp
chr12 132636183 132636183 1 + G A rs200091849 132636180 + 132636160 132636200 41 GGGTCCTCGTGCACCGTCCACACGGCCCTGGTGAGTTGCGG GGGTCCTCGTGCACCGTCCACACAGCCCTGGTGAGTTGCGG < 41bp 0.789181959368865 0.570587856589223 0.15277788 0.04314053 prediction 0.437188205559285 Functional Loss - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132636180 chr12:132636183 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_82933 0 0 0 0 1 NOC4L chr12:132636189 5'GT 132636189 Upstream 7bp
chr3 36524539 36524539 1 + C T UCEC 36524537 + 36524517 36524557 41 CCTGTAAGATGAGCATCCACCACAAGTGCACAGATGGCCTG CCTGTAAGATGAGCATCCACCATAAGTGCACAGATGGCCTG < 41bp 0.862924350315189 0.644330938600306 0.40633446 0.1382255 prediction 0.437186823429767 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36524537 chr3:36524539 synonymous SNV . 0 23 hm5C_associated_SNPs_82934 0 0 0 1 2 STAC chr3:36524484 3'AG 36524484 Downstream 56bp
chr3 36524539 36524539 1 + C T UCEC 36524537 + 36524517 36524557 41 CCTGTAAGATGAGCATCCACCACAAGTGCACAGATGGCCTG CCTGTAAGATGAGCATCCACCATAAGTGCACAGATGGCCTG < 41bp 0.862924350315189 0.644330938600306 0.40633446 0.1382255 prediction 0.437186823429767 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36524537 chr3:36524539 synonymous SNV . 0 23 hm5C_associated_SNPs_82934 0 0 0 1 2 STAC chr3:36524584 5'GT 36524584 Upstream 46bp
chr2 241976709 241976709 1 + C T rs139139954 241976707 + 241976687 241976727 41 AGAATGGTGGGACCTGTACTCACGGCATCAACAGTTTCCGC AGAATGGTGGGACCTGTACTCATGGCATCAACAGTTTCCGC < 41bp 0.718589006465813 0.454268873630182 0.7729853 0.774523 prediction 0.437178012931626 Functional Loss - SNED1 ENSG00000162804 CDS Human protein_coding chr2:241976707 chr2:241976709 synonymous SNV . 0 23 hm5C_associated_SNPs_82936 0 0 0 0 2 SNED1 chr2:241976657 3'AG 241976657 Downstream 53bp
chr2 241976709 241976709 1 + C T rs139139954 241976707 + 241976687 241976727 41 AGAATGGTGGGACCTGTACTCACGGCATCAACAGTTTCCGC AGAATGGTGGGACCTGTACTCATGGCATCAACAGTTTCCGC < 41bp 0.718589006465813 0.454268873630182 0.7729853 0.774523 prediction 0.437178012931626 Functional Loss - SNED1 ENSG00000162804 CDS Human protein_coding chr2:241976707 chr2:241976709 synonymous SNV . 0 23 hm5C_associated_SNPs_82936 0 0 0 0 2 SNED1 chr2:241976770 5'GT 241976770 Upstream 62bp
chr6 168445602 168445602 1 + C T COAD 168445600 + 168445580 168445620 41 CCTGGGTTTCGGGATCCGAGCTCGGCAAGTCCAGCGAGGCC CCTGGGTTTCGGGATCCGAGCTTGGCAAGTCCAGCGAGGCC < 41bp 0.81989831030464 0.601310646414042 0.43495166 0.41088712 prediction 0.437175327781198 Functional Loss - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168445600 chr6:168445602 nonsynonymous SNV 0.000 4 23 hm5C_associated_SNPs_82938 0 0 0 0 1 KIF25 chr6:168445507 3'AG 168445507 Downstream 96bp
chr4 178882052 178882052 1 + T C LUSC 178882051 + 178882031 178882071 41 TCACAGCTGCTTTATGCAATCTGGAAAAAGTACGGGATTTC TCACAGCTGCTTTATGCAATCCGGAAAAAGTACGGGATTTC < 41bp 0.724809069907016 0.506221925013843 0.23168603 0.4420919 prediction 0.437174289786345 Functional Loss - LINC01098 ENSG00000231171 CDS Human lincRNA chr4:178882051 chr4:178882052 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_82940 0 0 0 0 1 LINC01098 chr4:178882059 5'GT 178882059 Upstream 8bp
chr11 62010863 62010863 1 + C T rs2232950 62010860 + 62010840 62010880 41 TCTTGCCAAATTTGATGCCCCTCCGGAAGCTGTTGCAGCCA TCTTGCCAAATTTGATGCCCCTCTGGAAGCTGTTGCAGCCA < 41bp 0.721215994856153 0.50263455011201 0.32268274 0.12867194 prediction 0.437162889488286 Functional Loss - SCGB1D2 ENSG00000124935 CDS Human protein_coding chr11:62010860 chr11:62010863 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_82942 0 0 0 0 1 SCGB1D2 chr11:62010948 5'GT 62010948 Upstream 86bp
chr13 19919317 19919317 1 + C T rs9554041 19919315 + 19919295 19919335 41 GCTCACAGGCACTTTGGGACCCCGAAAGAAAAGGCTGTGCC GCTCACAGGCACTTTGGGACCCTGAAAGAAAAGGCTGTGCC < 41bp 0.734583128167447 0.516005110992341 0.22941366 0.19854003 prediction 0.437156034350212 Functional Loss - LINC00421 ENSG00000236834 ncRNA_exonic Human lincRNA chr13:19919315 chr13:19919317 . . 0 23 hm5C_associated_SNPs_82944 0 0 0 0 1 LINC00421 chr13:19919357 5'GT 19919357 Upstream 41bp
chr7 102040048 102040048 1 + C T OV 102040045 + 102040025 102040065 41 TCCACGTGTACAGACATCTGCGCCGGAGAGAATATCAGCGA TCCACGTGTACAGACATCTGCGCTGGAGAGAATATCAGCGA < 41bp 0.738340391034199 0.519765649682542 0.35615945 0.358868 prediction 0.437149482703315 Functional Loss - PRKRIP1 ENSG00000128563 CDS Human protein_coding chr7:102040045 chr7:102040048 nonsynonymous SNV 0.985 4 24 hm5C_associated_SNPs_82946 0 0 1 0 2 PRKRIP1 chr7:102039995 3'AG 102039995 Downstream 54bp
chr7 102040048 102040048 1 + C T OV 102040045 + 102040025 102040065 41 TCCACGTGTACAGACATCTGCGCCGGAGAGAATATCAGCGA TCCACGTGTACAGACATCTGCGCTGGAGAGAATATCAGCGA < 41bp 0.738340391034199 0.519765649682542 0.35615945 0.358868 prediction 0.437149482703315 Functional Loss - PRKRIP1 ENSG00000128563 CDS Human protein_coding chr7:102040045 chr7:102040048 nonsynonymous SNV 0.985 4 24 hm5C_associated_SNPs_82946 0 0 1 0 2 PRKRIP1 chr7:102040095 5'GT 102040095 Upstream 48bp
chr17 42152707 42152707 1 + C T COAD 42152705 + 42152685 42152725 41 CCTGGGCTGGCTGATGACTCCCCGAGTGCCTATGGAGCGGG CCTGGGCTGGCTGATGACTCCCTGAGTGCCTATGGAGCGGG < 41bp 0.854143271319844 0.635568831351403 0.15548879 0.039334297 prediction 0.437148879936881 Functional Loss - G6PC3 ENSG00000141349 CDS Human protein_coding chr17:42152705 chr17:42152707 stopgain 0.986 0 23 hm5C_associated_SNPs_82947 0 0 1 0 1 G6PC3 chr17:42152678 3'AG 42152678 Downstream 30bp
chr5 14607538 14607538 1 + C T UCEC 14607535 + 14607515 14607555 41 GCTCGAATGTGTTTGGAAAACTACGGAAATATGTGGAATTA GCTCGAATGTGTTTGGAAAACTATGGAAATATGTGGAATTA < 41bp 0.731496907501029 0.512928631557473 0.045339614 0.039777756 prediction 0.437136551887111 Functional Loss - FAM105A ENSG00000145569 CDS Human protein_coding chr5:14607535 chr5:14607538 nonsynonymous SNV 0.952 4 24 hm5C_associated_SNPs_82950 0 0 1 0 2 FAM105A chr5:14607439 3'AG 14607439 Downstream 100bp
chr5 14607538 14607538 1 + C T UCEC 14607535 + 14607515 14607555 41 GCTCGAATGTGTTTGGAAAACTACGGAAATATGTGGAATTA GCTCGAATGTGTTTGGAAAACTATGGAAATATGTGGAATTA < 41bp 0.731496907501029 0.512928631557473 0.045339614 0.039777756 prediction 0.437136551887111 Functional Loss - FAM105A ENSG00000145569 CDS Human protein_coding chr5:14607535 chr5:14607538 nonsynonymous SNV 0.952 4 24 hm5C_associated_SNPs_82950 0 0 1 0 2 FAM105A chr5:14607567 5'GT 14607567 Upstream 30bp
chr21 43711754 43711754 1 + C T rs139750767 43711751 + 43711731 43711771 41 GGCCTGCTGATCGGAGCCGCCTCCACGTCCCTGCAGGTGCC GGCCTGCTGATCGGAGCCGCCTCTACGTCCCTGCAGGTGCC < 41bp 0.72705014423851 0.508485084503644 0.95133406 0.92010677 prediction 0.437130119469733 Functional Loss - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43711751 chr21:43711754 synonymous SNV . 0 24 hm5C_associated_SNPs_82951 0 0 0 0 1 ABCG1 chr21:43711766 5'GT 43711766 Upstream 13bp
chr1 1961018 1961018 1 + G A UCEC 1961015 + 1960995 1961035 41 ACCACGGTGCTGACGATGACCACGCTCATGGTCAGTGCCCG ACCACGGTGCTGACGATGACCACACTCATGGTCAGTGCCCG < 41bp 0.718564665024883 0.4752619911085 0.12954062 0.13269621 prediction 0.437129330049767 Functional Loss - GABRD ENSG00000187730 CDS Human protein_coding chr1:1961015 chr1:1961018 synonymous SNV . 0 24 hm5C_associated_SNPs_82952 0 0 0 0 1 GABRD chr1:1960990 3'AG 1960990 Downstream 29bp
chr3 183959063 183959063 1 + G A COAD 183959060 + 183959040 183959080 41 TTGGGGGACCCTGCCACTCCCACGGAAGGTCCTCGCCGCCC TTGGGGGACCCTGCCACTCCCACAGAAGGTCCTCGCCGCCC < 41bp 0.810310724456196 0.591747860630103 0.88551927 0.60655206 prediction 0.437125727652186 Functional Loss - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183959060 chr3:183959063 synonymous SNV . 0 24 hm5C_associated_SNPs_82954 0 0 0 0 1 VWA5B2 chr3:183958975 3'AG 183958975 Downstream 89bp
chr19 50961849 50961849 1 + G C LUAD 50961845 + 50961825 50961865 41 GCAGGGCCTCTCTCTCCAGCCGAGGAATGGGTCCCTGCCAA GCAGGGCCTCTCTCTCCAGCCGAGCAATGGGTCCCTGCCAA < 41bp 0.86914106902132 0.650582309501029 0.9352349 0.69725215 prediction 0.437117519040582 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50961845 chr19:50961849 nonsynonymous SNV 0.041 1 25 hm5C_associated_SNPs_82956 0 0 0 0 1 MYBPC2 chr19:50961844 3'AG 50961844 Downstream 6bp
chr2 228758521 228758521 1 + G T PAAD 228758519 + 228758499 228758539 41 TCCTTGTGTTAGCTTTATCACAGGAAGCTATGATCGGACGT TCCTTGTGTTAGCTTTATCACATGAAGCTATGATCGGACGT < 41bp 0.901738348299514 0.68318443176815 0.37915128 0.21944308 prediction 0.437107833062728 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228758519 chr2:228758521 stopgain 0.995 1 23 hm5C_associated_SNPs_82959 0 0 0 0 1 DAW1 chr2:228758511 3'AG 228758511 Downstream 11bp
chr6 16290717 16290717 1 + T C STAD 16290716 + 16290696 16290736 41 CTGGAGCAGATTTTGTCATGCTGGGAGGAATGTTTTCGGGT CTGGAGCAGATTTTGTCATGCCGGGAGGAATGTTTTCGGGT < 41bp 0.718552746761785 0.480713839529711 0.10944861 0.10285953 prediction 0.437105493523569 Functional Loss - GMPR ENSG00000137198 CDS Human protein_coding chr6:16290716 chr6:16290717 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_82960 0 0 0 0 1 GMPR chr6:16290693 3'AG 16290693 Downstream 25bp
chrX 47101903 47101903 1 + G A BLCA 47101900 + 47101880 47101920 41 TGTGTGGCTCTGTCCAAACACACGGGCATCTCGCCAGAGAG TGTGTGGCTCTGTCCAAACACACAGGCATCTCGCCAGAGAG < 41bp 0.822950055569425 0.604401218674331 0.3230713 0.12384564 prediction 0.437097673790188 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47101900 chrX:47101903 synonymous SNV . 0 24 hm5C_associated_SNPs_82962 0 0 1 0 1 USP11 chrX:47101838 3'AG 47101838 Downstream 66bp
chr11 1901410 1901410 1 + G A rs141540340 1901407 + 1901387 1901427 41 AGGCAGCTTCAGGCCCAGGACGAGGAGGGAGGCGGCCATGT AGGCAGCTTCAGGCCCAGGACGAAGAGGGAGGCGGCCATGT < 41bp 0.819157905425361 0.600610571551215 0.8806411 0.78162 prediction 0.437094667748292 Functional Loss - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1901407 chr11:1901410 synonymous SNV . 0 24 hm5C_associated_SNPs_82963 0 0 0 0 2 LSP1 chr11:1901317 3'AG 1901317 Downstream 94bp
chr11 1901410 1901410 1 + G A rs141540340 1901407 + 1901387 1901427 41 AGGCAGCTTCAGGCCCAGGACGAGGAGGGAGGCGGCCATGT AGGCAGCTTCAGGCCCAGGACGAAGAGGGAGGCGGCCATGT < 41bp 0.819157905425361 0.600610571551215 0.8806411 0.78162 prediction 0.437094667748292 Functional Loss - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1901407 chr11:1901410 synonymous SNV . 0 24 hm5C_associated_SNPs_82963 0 0 0 0 2 LSP1 chr11:1901454 5'GT 1901454 Upstream 45bp
chrX 52657343 52657343 1 + C T rs782252755 52657341 + 52657321 52657361 41 GGCAGGCTCCAGAGAATCATCCCGAAGGTGAGTACCTCTCA GGCAGGCTCCAGAGAATCATCCTGAAGGTGAGTACCTCTCA < 41bp 0.831336576585699 0.612792507946937 0.32281268 0.2056076 prediction 0.437088137277526 Functional Loss - SSX8 ENSG00000157965 ncRNA_exonic Human unprocessed_pseudogene chrX:52657341 chrX:52657343 . . 0 23 hm5C_associated_SNPs_82964 0 0 0 0 2 SSX8 chrX:52657298 3'AG 52657298 Downstream 46bp
chrX 52657343 52657343 1 + C T rs782252755 52657341 + 52657321 52657361 41 GGCAGGCTCCAGAGAATCATCCCGAAGGTGAGTACCTCTCA GGCAGGCTCCAGAGAATCATCCTGAAGGTGAGTACCTCTCA < 41bp 0.831336576585699 0.612792507946937 0.32281268 0.2056076 prediction 0.437088137277526 Functional Loss - SSX8 ENSG00000157965 ncRNA_exonic Human unprocessed_pseudogene chrX:52657341 chrX:52657343 . . 0 23 hm5C_associated_SNPs_82964 0 0 0 0 2 SSX8 chrX:52657347 5'GT 52657347 Upstream 5bp
chr2 36706764 36706764 1 + C T COAD 36706761 + 36706741 36706781 41 TGCGTCAACGGTGAACGCCACTGCGTTGCGACCGTCTGCGG TGCGTCAACGGTGAACGCCACTGTGTTGCGACCGTCTGCGG < 41bp 0.718539002968389 0.495436253968791 0.079460114 0.064986885 prediction 0.437078005936778 Functional Loss - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36706761 chr2:36706764 synonymous SNV . 0 24 hm5C_associated_SNPs_82966 0 0 0 0 1 CRIM1 chr2:36706837 5'GT 36706837 Upstream 74bp
chr5 176295907 176295907 1 + C T STAD 176295904 + 176295884 176295924 41 GCTGACACGGCCAACTACACCTGCGTGGCCAAGAACATCGT GCTGACACGGCCAACTACACCTGTGTGGCCAAGAACATCGT < 41bp 0.739152128829314 0.520613769939101 0.25094485 0.30579683 prediction 0.437076717780424 Functional Loss - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176295904 chr5:176295907 synonymous SNV . 0 24 hm5C_associated_SNPs_82967 0 0 0 0 1 UNC5A chr5:176295965 5'GT 176295965 Upstream 59bp
chr12 14634051 14634051 1 + C T LUAD 14634048 + 14634028 14634068 41 TTATACAACTCTTCCTGCACCACCAGCTCAGGCTCCCTTGC TTATACAACTCTTCCTGCACCACTAGCTCAGGCTCCCTTGC < 41bp 0.754032685862331 0.535501787274023 0.04974875 0.040527165 prediction 0.437061797176615 Functional Loss - ATF7IP ENSG00000171681 CDS Human protein_coding chr12:14634048 chr12:14634051 nonsynonymous SNV 0.988 1 24 hm5C_associated_SNPs_82968 0 0 1 0 1 ATF7IP chr12:14634119 5'GT 14634119 Upstream 69bp
chr19 12920991 12920991 1 + C T LGG 12920989 + 12920969 12921009 41 GCCAAAGCAGATGCCCTCTACCCGGTGGTTAGTGCTGCCAG GCCAAAGCAGATGCCCTCTACCTGGTGGTTAGTGCTGCCAG < 41bp 0.718521231957024 0.445484698794457 0.2655737 0.12996298 prediction 0.437042463914048 Functional Loss - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12920989 chr19:12920991 nonsynonymous SNV 0.010 5 23 hm5C_associated_SNPs_82969 0 0 1 0 1 RNASEH2A chr19:12921022 5'GT 12921022 Upstream 32bp
chr14 76905705 76905705 1 + G A LIHC 76905702 + 76905682 76905722 41 AGGCTGCTGAACAGGATGTCCTCGGACGACAGGCACCTGGG AGGCTGCTGAACAGGATGTCCTCAGACGACAGGCACCTGGG < 41bp 0.718516808205898 0.47162356626531 0.45256683 0.17309552 prediction 0.437033616411796 Functional Loss - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76905702 chr14:76905705 synonymous SNV . 0 24 hm5C_associated_SNPs_82972 0 0 0 0 1 ESRRB chr14:76905684 3'AG 76905684 Downstream 22bp
chr3 10255186 10255186 1 + G T LGG 10255184 + 10255164 10255204 41 ACAGACAGCCTGTTCAAGTCCAGGATCAATCGAAAGATTCT ACAGACAGCCTGTTCAAGTCCATGATCAATCGAAAGATTCT < 41bp 0.718516283690989 0.363131214206009 0.17321774 0.021656781 prediction 0.437032567381979 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10255184 chr3:10255186 stopgain 0.137 0 23 hm5C_associated_SNPs_82973 0 0 0 0 2 IRAK2 chr3:10255168 3'AG 10255168 Downstream 19bp
chr3 10255186 10255186 1 + G T LGG 10255184 + 10255164 10255204 41 ACAGACAGCCTGTTCAAGTCCAGGATCAATCGAAAGATTCT ACAGACAGCCTGTTCAAGTCCATGATCAATCGAAAGATTCT < 41bp 0.718516283690989 0.363131214206009 0.17321774 0.021656781 prediction 0.437032567381979 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10255184 chr3:10255186 stopgain 0.137 0 23 hm5C_associated_SNPs_82973 0 0 0 0 2 IRAK2 chr3:10255232 5'GT 10255232 Upstream 47bp
chr16 56692606 56692606 1 + T C CESC 56692605 + 56692585 56692625 41 AGGTGTCTCCTGCACCTGCGCTGGTTCCTGCAAGTGCAAAG AGGTGTCTCCTGCACCTGCGCCGGTTCCTGCAAGTGCAAAG < 41bp 0.771786969628458 0.553273395166269 0.11284509 0.0643006 prediction 0.437027148924377 Functional Loss - MT1F ENSG00000198417 CDS Human protein_coding chr16:56692605 chr16:56692606 synonymous SNV . 0 22 hm5C_associated_SNPs_82977 0 0 1 0 1 MT1F chr16:56692587 3'AG 56692587 Downstream 20bp
chr10 31750115 31750115 1 + G T ACC 31750113 + 31750093 31750133 41 AACAGACCAGACAGTGTTACCAGGGAGGAGCAGTGAAAGAG AACAGACCAGACAGTGTTACCATGGAGGAGCAGTGAAAGAG < 41bp 0.817234639328288 0.598725503681296 0.91052276 0.8551041 prediction 0.437018271293983 Functional Loss - ZEB1 ENSG00000148516 CDS Human protein_coding chr10:31750113 chr10:31750115 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_82978 0 0 1 0 1 ZEB1 chr10:31750166 5'GT 31750166 Upstream 52bp
chr9 37424918 37424918 1 + G T LUAD 37424915 + 37424895 37424935 41 AGCGAGGTGTGGCGGGGGCCCACGGCCTGCTCTGCCTCCTC AGCGAGGTGTGGCGGGGGCCCACTGCCTGCTCTGCCTCCTC < 41bp 0.93296207636009 0.714461121608609 0.8859497 0.34376907 prediction 0.437001909502962 Functional Loss - GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424915 chr9:37424918 nonsynonymous SNV 0.875 5 24 hm5C_associated_SNPs_82983 0 0 1 0 2 GRHPR chr9:37424842 3'AG 37424842 Downstream 77bp
chr9 37424918 37424918 1 + G T LUAD 37424915 + 37424895 37424935 41 AGCGAGGTGTGGCGGGGGCCCACGGCCTGCTCTGCCTCCTC AGCGAGGTGTGGCGGGGGCCCACTGCCTGCTCTGCCTCCTC < 41bp 0.93296207636009 0.714461121608609 0.8859497 0.34376907 prediction 0.437001909502962 Functional Loss - GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424915 chr9:37424918 nonsynonymous SNV 0.875 5 24 hm5C_associated_SNPs_82983 0 0 1 0 2 GRHPR chr9:37424972 5'GT 37424972 Upstream 55bp
chr11 63065199 63065199 1 + G A SKCM 63065196 + 63065176 63065216 41 CTTTGTCTTCTTTCTTCTTTCAAGGTAGGAGCTTTCTCTCT CTTTGTCTTCTTTCTTCTTTCAAAGTAGGAGCTTTCTCTCT < 41bp 0.7184990225769 0.474011949474656 0.87270737 0.633874 prediction 0.436998045153799 Functional Loss - SLC22A10 ENSG00000184999 CDS Human protein_coding chr11:63065196 chr11:63065199 nonsynonymous SNV 0.592 0 24 hm5C_associated_SNPs_82986 0 0 0 0 1 SLC22A10 chr11:63065199 5'GT 63065199 Upstream 1bp
chr3 121994885 121994885 1 + G T COAD 121994883 + 121994863 121994903 41 ATCCTGTGGAGTGGGTTCTCCAGGGAGGTAGGTGCTGTCCA ATCCTGTGGAGTGGGTTCTCCATGGAGGTAGGTGCTGTCCA < 41bp 0.718495997783667 0.358397468650174 0.922639 0.4051894 prediction 0.436991995567334 Functional Loss - CASR ENSG00000036828 CDS Human protein_coding chr3:121994883 chr3:121994885 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_82988 0 0 0 0 1 CASR chr3:121994889 5'GT 121994889 Upstream 5bp
chr5 139741448 139741448 1 + G T UCEC 139741446 + 139741426 139741466 41 AGGAAGCCCCCCTGAGGGAACAGGTTTGTGGCCCTTCCTTG AGGAAGCCCCCCTGAGGGAACATGTTTGTGGCCCTTCCTTG < 41bp 0.718495226404169 0.3535485708183 0.6288605 0.2230947 prediction 0.436990452808338 Functional Loss - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139741446 chr5:139741448 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_82990 0 0 0 0 2 SLC4A9 chr5:139741393 3'AG 139741393 Downstream 56bp
chr5 139741448 139741448 1 + G T UCEC 139741446 + 139741426 139741466 41 AGGAAGCCCCCCTGAGGGAACAGGTTTGTGGCCCTTCCTTG AGGAAGCCCCCCTGAGGGAACATGTTTGTGGCCCTTCCTTG < 41bp 0.718495226404169 0.3535485708183 0.6288605 0.2230947 prediction 0.436990452808338 Functional Loss - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139741446 chr5:139741448 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_82990 0 0 0 0 2 SLC4A9 chr5:139741448 5'GT 139741448 Upstream 1bp
chr21 33684046 33684046 1 + C T LUSC 33684044 + 33684024 33684064 41 CCTGGAGTCACGGCCTCAACCTCCACCTCTGCATCCAGAAG CCTGGAGTCACGGCCTCAACCTTCACCTCTGCATCCAGAAG < 41bp 0.844638234070335 0.626143291359319 0.6369878 0.03098011 prediction 0.436989885422031 Functional Loss - MRAP ENSG00000170262 CDS Human protein_coding chr21:33684044 chr21:33684046 synonymous SNV . 0 23 hm5C_associated_SNPs_82991 0 0 0 0 1 MRAP chr21:33683995 3'AG 33683995 Downstream 52bp
chr2 234678246 234678246 1 + G A rs36059993 234678243 + 234678223 234678263 41 TCAGATGAGAGGAGACGGAACACGGGGACACACCAGCTTGA TCAGATGAGAGGAGACGGAACACAGGGACACACCAGCTTGA < 41bp 0.7325029067847 0.514013579433548 0.8761841 0.23226109 prediction 0.436978654702304 Functional Loss - UGT1A1;UGT1A10;UGT1A3;UGT1A4;UGT1A5;UGT1A6;UGT1A7;UGT1A8;UGT1A9 ENSG00000167165;ENSG00000241635;ENSG00000242515;ENSG00000244474 UTR3 Human other chr2:234678243 chr2:234678246 . . 0 24 hm5C_associated_SNPs_82994 0 0 0 7 1 UGT1A1;UGT1A10;UGT1A3;UGT1A4;UGT1A5;UGT1A6;UGT1A7;UGT1A8;UGT1A9 chr2:234678177 3'AG 234678177 Downstream 70bp
chr1 171079966 171079966 1 + T C LIHC 171079965 + 171079945 171079985 41 ATCAGTTCCAGAAGTGGCTCCTGGGTGATGAGCCGGGTCTG ATCAGTTCCAGAAGTGGCTCCCGGGTGATGAGCCGGGTCTG < 41bp 0.785962424819911 0.567475586277778 0.8343415 0.8976277 prediction 0.436973677084265 Functional Loss - FMO3 ENSG00000007933 CDS Human protein_coding chr1:171079965 chr1:171079966 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_82995 0 0 0 0 1 FMO3 chr1:171079939 3'AG 171079939 Downstream 28bp
chr5 137681298 137681298 1 + G T LUAD 137681296 + 137681276 137681316 41 TGGACTTTGACAAGATGAATCAGGTGGGACCAGCAAGACTA TGGACTTTGACAAGATGAATCATGTGGGACCAGCAAGACTA < 41bp 0.7184836634991 0.372677223912542 0.80733705 0.33278453 prediction 0.436967326998201 Functional Loss - FAM53C ENSG00000120709 CDS Human protein_coding chr5:137681296 chr5:137681298 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_82996 0 0 1 0 1 FAM53C chr5:137681298 5'GT 137681298 Upstream 1bp
chr4 39114803 39114803 1 + G A COAD 39114800 + 39114780 39114820 41 TGCTGTATGCTATAGGGGGGCACGATGCTCCCGCATCCAAC TGCTGTATGCTATAGGGGGGCACAATGCTCCCGCATCCAAC < 41bp 0.718479791530347 0.49094295880708 0.06368661 0.07389158 prediction 0.436959583060695 Functional Loss - KLHL5 ENSG00000109790 CDS Human protein_coding chr4:39114800 chr4:39114803 nonsynonymous SNV 0.013 4 24 hm5C_associated_SNPs_83000 0 0 1 0 1 KLHL5 chr4:39114852 5'GT 39114852 Upstream 50bp
chr10 121191015 121191015 1 + C T CESC 121191013 + 121190993 121191033 41 CCCTCAATGAGAAGCAGATCCTCGAGAAGGTCAACAGTCAG CCCTCAATGAGAAGCAGATCCTTGAGAAGGTCAACAGTCAG < 41bp 0.862272450390589 0.643799557593385 0.8770423 0.32482478 prediction 0.436945785594408 Functional Loss - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121191013 chr10:121191015 synonymous SNV . 0 23 hm5C_associated_SNPs_83003 0 0 1 0 1 GRK5 chr10:121191039 5'GT 121191039 Upstream 25bp
chr16 640349 640349 1 + G A COAD 640346 + 640326 640366 41 ACTACCTGCTCAAGTTCCTGCTGGTGGGCGACAGCGACGTG ACTACCTGCTCAAGTTCCTGCTGATGGGCGACAGCGACGTG < 41bp 0.71846704014168 0.479685956632847 0.31864822 0.22334689 prediction 0.43693408028336 Functional Loss - RAB40C ENSG00000197562 CDS Human protein_coding chr16:640346 chr16:640349 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_83006 0 0 1 0 2 RAB40C chr16:640261 3'AG 640261 Downstream 89bp
chr16 640349 640349 1 + G A COAD 640346 + 640326 640366 41 ACTACCTGCTCAAGTTCCTGCTGGTGGGCGACAGCGACGTG ACTACCTGCTCAAGTTCCTGCTGATGGGCGACAGCGACGTG < 41bp 0.71846704014168 0.479685956632847 0.31864822 0.22334689 prediction 0.43693408028336 Functional Loss - RAB40C ENSG00000197562 CDS Human protein_coding chr16:640346 chr16:640349 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_83006 0 0 1 0 2 RAB40C chr16:640433 5'GT 640433 Upstream 85bp
chr1 55158218 55158218 1 + G T rs540861616 55158214 + 55158194 55158234 41 CAGGTGGAGAGCCACCACCGCGGAGTGGCCTTGCTGGCAAG CAGGTGGAGAGCCACCACCGCGGATTGGCCTTGCTGGCAAG < 41bp 0.718534405457487 0.500073364419081 0.9094672 0.6558119 prediction 0.436922082076812 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55158214 chr1:55158218 nonsynonymous SNV 0.979 3 25 hm5C_associated_SNPs_83009 0 0 0 0 1 MROH7 chr1:55158234 5'GT 55158234 Upstream 17bp
chr18 63511096 63511096 1 + G T LIHC 63511094 + 63511074 63511114 41 TTACACGCTACGGATAGAAGCTGCAAATAAAGATGCCGACC TTACACGCTACGGATAGAAGCTTCAAATAAAGATGCCGACC < 41bp 0.71845973282266 0.369159079970636 0.07569635 0.045081526 prediction 0.436919465645321 Functional Loss - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63511094 chr18:63511096 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_83012 0 0 0 0 1 CDH7 chr18:63511048 3'AG 63511048 Downstream 49bp
chr2 27016113 27016113 1 + G A LGG 27016110 + 27016090 27016130 41 CCCAAAGGATGTGCAACTGGCCCGGAGGATCCGGGGCCTTG CCCAAAGGATGTGCAACTGGCCCAGAGGATCCGGGGCCTTG < 41bp 0.718458277522344 0.477430742614594 0.45103487 0.2801103 prediction 0.436916555044688 Functional Loss - CENPA ENSG00000115163 CDS Human protein_coding chr2:27016110 chr2:27016113 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_83013 0 0 1 1 1 CENPA chr2:27016194 5'GT 27016194 Upstream 82bp
chr2 27016112 27016112 1 + C T LUAD 27016110 + 27016090 27016130 41 CCCAAAGGATGTGCAACTGGCCCGGAGGATCCGGGGCCTTG CCCAAAGGATGTGCAACTGGCCTGGAGGATCCGGGGCCTTG < 41bp 0.718458277522344 0.450025200626152 0.45103487 0.29294795 prediction 0.436916555044688 Functional Loss - CENPA ENSG00000115163 CDS Human protein_coding chr2:27016110 chr2:27016112 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_83014 0 0 1 1 2 CENPA chr2:27016013 3'AG 27016013 Downstream 100bp
chr2 27016112 27016112 1 + C T LUAD 27016110 + 27016090 27016130 41 CCCAAAGGATGTGCAACTGGCCCGGAGGATCCGGGGCCTTG CCCAAAGGATGTGCAACTGGCCTGGAGGATCCGGGGCCTTG < 41bp 0.718458277522344 0.450025200626152 0.45103487 0.29294795 prediction 0.436916555044688 Functional Loss - CENPA ENSG00000115163 CDS Human protein_coding chr2:27016110 chr2:27016112 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_83014 0 0 1 1 2 CENPA chr2:27016194 5'GT 27016194 Upstream 83bp
chr7 100385680 100385680 1 + G A SKCM 100385677 + 100385657 100385697 41 CGCAACAAGATGGATCCGCCCAGGAGCTCCATCTTCTTGCA CGCAACAAGATGGATCCGCCCAGAAGCTCCATCTTCTTGCA < 41bp 0.74641928397262 0.527964847481815 0.90587586 0.9054147 prediction 0.436908872981608 Functional Loss - ZAN ENSG00000146839 CDS Human protein_coding chr7:100385677 chr7:100385680 synonymous SNV . 0 24 hm5C_associated_SNPs_83015 0 0 0 0 1 ZAN chr7:100385758 5'GT 100385758 Upstream 79bp
chr2 113742458 113742458 1 + G A SKCM 113742455 + 113742435 113742475 41 CTGTATGGCCAACCCGAGCCCGTGAAACCCTTCCTTTTCTA CTGTATGGCCAACCCGAGCCCGTAAAACCCTTCCTTTTCTA < 41bp 0.7563451198555 0.537891479850117 0.5532783 0.23930857 prediction 0.436907280010766 Functional Loss - IL36G ENSG00000136688 CDS Human protein_coding chr2:113742455 chr2:113742458 synonymous SNV . 0 24 hm5C_associated_SNPs_83016 0 0 0 0 1 IL36G chr2:113742417 3'AG 113742417 Downstream 42bp
chr14 89063104 89063104 1 + C T UCEC 89063102 + 89063082 89063122 41 TCAACAGAGGCAATTATTATCCCGACTGCAAATCGACCCAG TCAACAGAGGCAATTATTATCCTGACTGCAAATCGACCCAG < 41bp 0.718448961375633 0.441128353721005 0.30376524 0.28277922 prediction 0.436897922751266 Functional Loss - ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89063102 chr14:89063104 stopgain 1.000 1 23 hm5C_associated_SNPs_83018 0 0 1 0 2 ZC3H14 chr14:89063078 3'AG 89063078 Downstream 27bp
chr14 89063104 89063104 1 + C T UCEC 89063102 + 89063082 89063122 41 TCAACAGAGGCAATTATTATCCCGACTGCAAATCGACCCAG TCAACAGAGGCAATTATTATCCTGACTGCAAATCGACCCAG < 41bp 0.718448961375633 0.441128353721005 0.30376524 0.28277922 prediction 0.436897922751266 Functional Loss - ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89063102 chr14:89063104 stopgain 1.000 1 23 hm5C_associated_SNPs_83018 0 0 1 0 2 ZC3H14 chr14:89063152 5'GT 89063152 Upstream 49bp
chr14 21464757 21464757 1 + C T HNSC 21464755 + 21464735 21464775 41 GGTCTCCAGAGGAGGCTCATCGCTGGCCCCGTATCACTCAG GGTCTCCAGAGGAGGCTCATCGTTGGCCCCGTATCACTCAG < 41bp 0.832934869888387 0.614486874342237 0.31299013 0.27067322 prediction 0.436895991092301 Functional Loss - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21464755 chr14:21464757 synonymous SNV . 0 23 hm5C_associated_SNPs_83019 0 0 1 0 1 METTL17 chr14:21464686 3'AG 21464686 Downstream 72bp
chr21 33318388 33318388 1 + G A PRAD 33318385 + 33318365 33318405 41 TGCGCAGGGATCCTGGGTTACTCGGATCCGTTCAGCACACA TGCGCAGGGATCCTGGGTTACTCAGATCCGTTCAGCACACA < 41bp 0.791425529217112 0.572978463530919 0.29458705 0.3995393 prediction 0.436894131372387 Functional Loss - HUNK ENSG00000142149 CDS Human protein_coding chr21:33318385 chr21:33318388 synonymous SNV . 0 24 hm5C_associated_SNPs_83021 0 0 0 0 2 HUNK chr21:33318348 3'AG 33318348 Downstream 41bp
chr21 33318388 33318388 1 + G A PRAD 33318385 + 33318365 33318405 41 TGCGCAGGGATCCTGGGTTACTCGGATCCGTTCAGCACACA TGCGCAGGGATCCTGGGTTACTCAGATCCGTTCAGCACACA < 41bp 0.791425529217112 0.572978463530919 0.29458705 0.3995393 prediction 0.436894131372387 Functional Loss - HUNK ENSG00000142149 CDS Human protein_coding chr21:33318385 chr21:33318388 synonymous SNV . 0 24 hm5C_associated_SNPs_83021 0 0 0 0 2 HUNK chr21:33318483 5'GT 33318483 Upstream 96bp
chr7 55974028 55974028 1 + C T rs2135118 55974026 + 55974006 55974046 41 TCTTTGAAAGTGGCGCTTGGCACCAGCATGAACTCCCCATC TCTTTGAAAGTGGCGCTTGGCATCAGCATGAACTCCCCATC < 41bp 0.774987402481009 0.556540636180524 0.1132355 0.058421373 prediction 0.436893532600971 Functional Loss - ZNF713 ENSG00000178665;ENSG00000249773 UTR5 Human other chr7:55974026 chr7:55974028 . . 0 23 hm5C_associated_SNPs_83022 0 0 1 0 2 ZNF713 chr7:55973946 3'AG 55973946 Downstream 83bp
chr7 55974028 55974028 1 + C T rs2135118 55974026 + 55974006 55974046 41 TCTTTGAAAGTGGCGCTTGGCACCAGCATGAACTCCCCATC TCTTTGAAAGTGGCGCTTGGCATCAGCATGAACTCCCCATC < 41bp 0.774987402481009 0.556540636180524 0.1132355 0.058421373 prediction 0.436893532600971 Functional Loss - ZNF713 ENSG00000178665;ENSG00000249773 UTR5 Human other chr7:55974026 chr7:55974028 . . 0 23 hm5C_associated_SNPs_83022 0 0 1 0 2 ZNF713 chr7:55974072 5'GT 55974072 Upstream 45bp
chr1 204939772 204939772 1 + G T UCEC 204939769 + 204939749 204939789 41 CCCTACTGGCTGGACGAACCCAAGAACCTTATTCTGGCTCC CCCTACTGGCTGGACGAACCCAATAACCTTATTCTGGCTCC < 41bp 0.718440504888279 0.370897045476429 0.7197135 0.15220058 prediction 0.436881009776557 Functional Loss - NFASC ENSG00000163531 CDS Human protein_coding chr1:204939769 chr1:204939772 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_83024 0 0 0 0 1 NFASC chr1:204939744 3'AG 204939744 Downstream 29bp
chr19 55417961 55417961 1 + G A LUSC 55417958 + 55417938 55417978 41 AGCAAGTGACCATCTGTTGCCAGGGAAATTATGGGGCTGTT AGCAAGTGACCATCTGTTGCCAGAGAAATTATGGGGCTGTT < 41bp 0.748874707355116 0.53043529308091 0.89359653 0.87292266 prediction 0.436878828548411 Functional Loss - NCR1 ENSG00000189430 CDS Human protein_coding chr19:55417958 chr19:55417961 nonsynonymous SNV 0.050 4 24 hm5C_associated_SNPs_83025 0 0 0 0 1 NCR1 chr19:55417881 3'AG 55417881 Downstream 81bp
chr1 17270753 17270753 1 + G A CESC 17270750 + 17270730 17270770 41 GGACGCAGTGCAGGATGGCGCGCGGGTGCGCCGGGAGCTTG GGACGCAGTGCAGGATGGCGCGCAGGTGCGCCGGGAGCTTG < 41bp 0.793677533159903 0.575238311865083 0.8380375 0.7779454 prediction 0.43687844258964 Functional Loss - CROCC ENSG00000058453 CDS Human protein_coding chr1:17270750 chr1:17270753 nonsynonymous SNV 0.008 1 24 hm5C_associated_SNPs_83026 0 0 1 0 1 CROCC chr1:17270777 5'GT 17270777 Upstream 25bp
chr14 96912879 96912879 1 + G A SKCM 96912876 + 96912856 96912896 41 TGATACAAAACGTCATAGATCACGTGCCAAAGCCTCACTAC TGATACAAAACGTCATAGATCACATGCCAAAGCCTCACTAC < 41bp 0.718439163771223 0.468720612032887 0.39517292 0.059191942 prediction 0.436878327542446 Functional Loss - AK7 ENSG00000140057 CDS Human protein_coding chr14:96912876 chr14:96912879 nonsynonymous SNV 0.063 0 24 hm5C_associated_SNPs_83027 0 0 0 0 1 AK7 chr14:96912944 5'GT 96912944 Upstream 66bp
chr12 130827153 130827153 1 + G A SKCM 130827150 + 130827130 130827170 41 GAAAACAATGACTGGGAGAGCCCGAGCCAGAGCCAGAGGAA GAAAACAATGACTGGGAGAGCCCAAGCCAGAGCCAGAGGAA < 41bp 0.718438342015872 0.481784470679366 0.5300936 0.24551427 prediction 0.436876684031745 Functional Loss - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130827150 chr12:130827153 nonsynonymous SNV 0.794 4 24 hm5C_associated_SNPs_83029 0 0 0 0 2 PIWIL1 chr12:130827125 3'AG 130827125 Downstream 29bp
chr12 130827153 130827153 1 + G A SKCM 130827150 + 130827130 130827170 41 GAAAACAATGACTGGGAGAGCCCGAGCCAGAGCCAGAGGAA GAAAACAATGACTGGGAGAGCCCAAGCCAGAGCCAGAGGAA < 41bp 0.718438342015872 0.481784470679366 0.5300936 0.24551427 prediction 0.436876684031745 Functional Loss - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130827150 chr12:130827153 nonsynonymous SNV 0.794 4 24 hm5C_associated_SNPs_83029 0 0 0 0 2 PIWIL1 chr12:130827214 5'GT 130827214 Upstream 62bp
chr8 8093397 8093397 1 + G A rs143149047 8093394 + 8093374 8093414 41 GCCATCATCTCCCACAGCACCACGGGTCTGGTCACATGGGA GCCATCATCTCCCACAGCACCACAGGTCTGGTCACATGGGA < 41bp 0.718433831303849 0.491985100324072 0.33365428 0.22371173 prediction 0.436867662607698 Functional Loss - FAM86B3P ENSG00000173295 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr8:8093394 chr8:8093397 . . 0 24 hm5C_associated_SNPs_83031 0 0 1 2 2 FAM86B3P chr8:8093338 3'AG 8093338 Downstream 60bp
chr8 8093397 8093397 1 + G A rs143149047 8093394 + 8093374 8093414 41 GCCATCATCTCCCACAGCACCACGGGTCTGGTCACATGGGA GCCATCATCTCCCACAGCACCACAGGTCTGGTCACATGGGA < 41bp 0.718433831303849 0.491985100324072 0.33365428 0.22371173 prediction 0.436867662607698 Functional Loss - FAM86B3P ENSG00000173295 ncRNA_exonic Human other chr8:8093394 chr8:8093397 . . 0 24 hm5C_associated_SNPs_83031 0 0 1 2 2 FAM86B3P chr8:8093471 5'GT 8093471 Upstream 75bp
chr19 11168977 11168977 1 + C T BLCA 11168975 + 11168955 11168995 41 GGTCTTCATCCAGCTGCCCTCGCGAAAGGAGCTGCCCGAGT GGTCTTCATCCAGCTGCCCTCGTGAAAGGAGCTGCCCGAGT < 41bp 0.837259863349277 0.61882897443177 0.918229 0.88976276 prediction 0.436861777835013 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11168975 chr19:11168977 stopgain 0.630 1 23 hm5C_associated_SNPs_83033 0 0 1 0 3 SMARCA4 chr19:11168931 3'AG 11168931 Downstream 47bp
chr19 11168977 11168977 1 + C T BLCA 11168975 + 11168955 11168995 41 GGTCTTCATCCAGCTGCCCTCGCGAAAGGAGCTGCCCGAGT GGTCTTCATCCAGCTGCCCTCGTGAAAGGAGCTGCCCGAGT < 41bp 0.837259863349277 0.61882897443177 0.918229 0.88976276 prediction 0.436861777835013 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11168975 chr19:11168977 stopgain 0.630 1 23 hm5C_associated_SNPs_83033 0 0 1 0 3 SMARCA4 chr19:11168934 3'AG 11168934 Downstream 44bp
chr19 11168977 11168977 1 + C T BLCA 11168975 + 11168955 11168995 41 GGTCTTCATCCAGCTGCCCTCGCGAAAGGAGCTGCCCGAGT GGTCTTCATCCAGCTGCCCTCGTGAAAGGAGCTGCCCGAGT < 41bp 0.837259863349277 0.61882897443177 0.918229 0.88976276 prediction 0.436861777835013 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11168975 chr19:11168977 stopgain 0.630 1 23 hm5C_associated_SNPs_83033 0 0 1 0 3 SMARCA4 chr19:11169039 5'GT 11169039 Upstream 63bp
chr10 105169541 105169541 1 + G T LUAD 105169538 + 105169518 105169558 41 GCACCTGGATCCCAAGAAAGCTGGAACATATTTCTCAAATC GCACCTGGATCCCAAGAAAGCTGTAACATATTTCTCAAATC < 41bp 0.718428960212513 0.325940955812965 0.06482029 0.081483275 prediction 0.436857920425026 Functional Loss - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105169538 chr10:105169541 nonsynonymous SNV 0.171 1 24 hm5C_associated_SNPs_83034 0 0 1 0 2 PDCD11 chr10:105169456 3'AG 105169456 Downstream 86bp
chr10 105169541 105169541 1 + G T LUAD 105169538 + 105169518 105169558 41 GCACCTGGATCCCAAGAAAGCTGGAACATATTTCTCAAATC GCACCTGGATCCCAAGAAAGCTGTAACATATTTCTCAAATC < 41bp 0.718428960212513 0.325940955812965 0.06482029 0.081483275 prediction 0.436857920425026 Functional Loss - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105169538 chr10:105169541 nonsynonymous SNV 0.171 1 24 hm5C_associated_SNPs_83034 0 0 1 0 2 PDCD11 chr10:105169563 5'GT 105169563 Upstream 23bp
chr10 114044382 114044382 1 + G A SKCM 114044379 + 114044359 114044399 41 GGGAAGTTCATCAGCTGGCCCTCGGAGGGCTGTGTTACAAT GGGAAGTTCATCAGCTGGCCCTCAGAGGGCTGTGTTACAAT < 41bp 0.718427972206102 0.469782856536545 0.28344992 0.071269274 prediction 0.436855944412203 Functional Loss - TECTB ENSG00000119913 CDS Human protein_coding chr10:114044379 chr10:114044382 nonsynonymous SNV 0.912 3 24 hm5C_associated_SNPs_83035 0 0 0 0 1 TECTB chr10:114044293 3'AG 114044293 Downstream 90bp
chr10 23326289 23326289 1 + C T UCEC 23326287 + 23326267 23326307 41 AGTCATGCTGCAGAATGACTCTCGGAAGGGAGTGATTGGGG AGTCATGCTGCAGAATGACTCTTGGAAGGGAGTGATTGGGG < 41bp 0.838559865535726 0.620132533619067 0.4332465 0.2995287 prediction 0.436854663833319 Functional Loss - ARMC3 ENSG00000165309 CDS Human protein_coding chr10:23326287 chr10:23326289 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_83036 0 0 0 0 1 ARMC3 chr10:23326199 3'AG 23326199 Downstream 91bp
chr8 142435212 142435212 1 + C T LUSC 142435209 + 142435189 142435229 41 TGAAGTGACCTATGACAAAACGCCGCTGGAGAAGGATGGCA TGAAGTGACCTATGACAAAACGCTGCTGGAGAAGGATGGCA < 41bp 0.718427134375101 0.494167723817256 0.060873657 0.071508706 prediction 0.436854268750203 Functional Loss - PTP4A3 ENSG00000184489 CDS Human protein_coding chr8:142435209 chr8:142435212 nonsynonymous SNV 0.571 1 24 hm5C_associated_SNPs_83037 0 0 0 0 2 PTP4A3 chr8:142435148 3'AG 142435148 Downstream 65bp
chr8 142435212 142435212 1 + C T LUSC 142435209 + 142435189 142435229 41 TGAAGTGACCTATGACAAAACGCCGCTGGAGAAGGATGGCA TGAAGTGACCTATGACAAAACGCTGCTGGAGAAGGATGGCA < 41bp 0.718427134375101 0.494167723817256 0.060873657 0.071508706 prediction 0.436854268750203 Functional Loss - PTP4A3 ENSG00000184489 CDS Human protein_coding chr8:142435209 chr8:142435212 nonsynonymous SNV 0.571 1 24 hm5C_associated_SNPs_83037 0 0 0 0 2 PTP4A3 chr8:142435240 5'GT 142435240 Upstream 29bp
chr17 36508910 36508910 1 + G A rs375541134 36508907 + 36508887 36508927 41 TCTGCGGGCCGGGAGCTGGACGCGGGGAGGTGAGACCGGCC TCTGCGGGCCGGGAGCTGGACGCAGGGAGGTGAGACCGGCC < 41bp 0.79473883649105 0.576313018444055 0.89698666 0.86882675 prediction 0.43685163609399 Functional Loss - SOCS7 ENSG00000174111 CDS Human other chr17:36508907 chr17:36508910 synonymous SNV . 0 24 hm5C_associated_SNPs_83038 0 0 1 0 1 SOCS7 chr17:36508915 5'GT 36508915 Upstream 6bp
chr11 117973950 117973950 1 + G A rs536140913 117973947 + 117973927 117973967 41 AGCACTGTGTCAAGAGCTTCCCCGAAGGGCCTGCAGTGGCA AGCACTGTGTCAAGAGCTTCCCCAAAGGGCCTGCAGTGGCA < 41bp 0.799715122674566 0.581299836034686 0.05530849 0.1816279 prediction 0.436830573279761 Functional Loss - TMPRSS4 ENSG00000137648 CDS Human protein_coding chr11:117973947 chr11:117973950 nonsynonymous SNV 0.148 1 24 hm5C_associated_SNPs_83043 0 0 0 0 1 TMPRSS4 chr11:117973968 5'GT 117973968 Upstream 19bp
chr18 61255930 61255930 1 + G A UCEC 61255927 + 61255907 61255947 41 TTCACTTGGCGCCGTCAGCACTCGACTTGGGTTTGATCTTT TTCACTTGGCGCCGTCAGCACTCAACTTGGGTTTGATCTTT < 41bp 0.776990028593963 0.558576112707131 0.47307467 0.15132722 prediction 0.436827831773663 Functional Loss - SERPINB13 ENSG00000197641 CDS Human protein_coding chr18:61255927 chr18:61255930 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_83045 0 0 0 0 1 SERPINB13 chr18:61255885 3'AG 61255885 Downstream 46bp
chr17 7490807 7490807 1 + G C SKCM 7490806 + 7490786 7490826 41 TCTCTCTGCAACGGCCTCATCGCCGCCCAGCTGCTCTTCTA TCTCTCTGCAACGGCCTCATCCCCGCCCAGCTGCTCTTCTA < 41bp 0.878589131096 0.660181543035396 0.64347136 0.1850017 prediction 0.436815176121208 Functional Loss - MPDU1 ENSG00000129255 CDS Human protein_coding chr17:7490806 chr17:7490807 nonsynonymous SNV 0.891 1 22 hm5C_associated_SNPs_83048 0 0 1 0 1 MPDU1 chr17:7490744 3'AG 7490744 Downstream 64bp
chr15 28900821 28900821 1 + G T rs560485452 28900818 + 28900798 28900838 41 CTCCATCACCCACAGCTTTGCGGGAAGGCCTTCCGAAGGGG CTCCATCACCCACAGCTTTGCGGTAAGGCCTTCCGAAGGGG < 41bp 0.718406827649279 0.322948532800516 0.75930685 0.12628207 prediction 0.436813655298559 Functional Loss - HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28900818 chr15:28900821 . . 0 24 hm5C_associated_SNPs_83049 0 0 0 0 1 HERC2P9 chr15:28900837 5'GT 28900837 Upstream 17bp
chr18 55309195 55309195 1 + G A rs528808657 55309192 + 55309172 55309212 41 CTGGTGTACAATGGCGCGATCTCGGCTCACTTCAACCTCCG CTGGTGTACAATGGCGCGATCTCAGCTCACTTCAACCTCCG < 41bp 0.782914500536238 0.564508623122249 0.73583996 0.2639423 prediction 0.436811754827978 Functional Loss - LOC100505549 ENSG00000267040;ENSG00000267787 ncRNA_exonic Human other chr18:55309192 chr18:55309195 . . 0 24 hm5C_associated_SNPs_83050 0 0 0 0 1 LOC100505549 chr18:55309284 5'GT 55309284 Upstream 90bp
chr16 50068024 50068024 1 + G A UCEC 50068021 + 50068001 50068041 41 ACATGTATTCAGTATAGCTGCTCGATGTCGAACGGTATTAG ACATGTATTCAGTATAGCTGCTCAATGTCGAACGGTATTAG < 41bp 0.734354360161813 0.515948657403794 0.2745335 0.7329424 prediction 0.436811405516037 Functional Loss - CNEP1R1 ENSG00000205423 CDS Human protein_coding chr16:50068021 chr16:50068024 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_83051 0 0 0 0 2 CNEP1R1 chr16:50068013 3'AG 50068013 Downstream 12bp
chr16 50068024 50068024 1 + G A UCEC 50068021 + 50068001 50068041 41 ACATGTATTCAGTATAGCTGCTCGATGTCGAACGGTATTAG ACATGTATTCAGTATAGCTGCTCAATGTCGAACGGTATTAG < 41bp 0.734354360161813 0.515948657403794 0.2745335 0.7329424 prediction 0.436811405516037 Functional Loss - CNEP1R1 ENSG00000205423 CDS Human protein_coding chr16:50068021 chr16:50068024 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_83051 0 0 0 0 2 CNEP1R1 chr16:50068067 5'GT 50068067 Upstream 44bp
chr8 87443710 87443710 1 + G T UCEC 87443707 + 87443687 87443727 41 AACAACCCAGTGGGAAGATCCAAGAACTCAAGGGTATGTAT AACAACCCAGTGGGAAGATCCAATAACTCAAGGGTATGTAT < 41bp 0.718404846716502 0.338546462324624 0.070667505 0.0135940015 prediction 0.436809693433004 Functional Loss - WWP1 ENSG00000123124 CDS Human protein_coding chr8:87443707 chr8:87443710 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_83052 0 0 1 0 1 WWP1 chr8:87443635 3'AG 87443635 Downstream 76bp
chr20 35173450 35173450 1 + C T UCEC 35173447 + 35173427 35173467 41 GCTTCATTGACAAGGAGGACCTGCACGACATGCTGGCCTCG GCTTCATTGACAAGGAGGACCTGTACGACATGCTGGCCTCG < 41bp 0.718404204943376 0.498189679977281 0.2644669 0.16830388 prediction 0.436808409886751 Functional Loss - MYL9 ENSG00000101335 CDS Human protein_coding chr20:35173447 chr20:35173450 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_83053 0 0 0 0 1 MYL9 chr20:35173471 5'GT 35173471 Upstream 22bp
chr11 67049366 67049366 1 + G A COAD 67049363 + 67049343 67049383 41 GACATGCGCTTCTATGCGGCCGAGATCATCCTGGGCCTGGA GACATGCGCTTCTATGCGGCCGAAATCATCCTGGGCCTGGA < 41bp 0.783691556467067 0.565288398440945 0.8856733 0.8151206 prediction 0.436806316052243 Functional Loss - GRK2 ENSG00000173020 CDS Human protein_coding chr11:67049363 chr11:67049366 synonymous SNV . 0 24 hm5C_associated_SNPs_83054 0 0 1 0 2 GRK2 chr11:67049293 3'AG 67049293 Downstream 74bp
chr11 67049366 67049366 1 + G A COAD 67049363 + 67049343 67049383 41 GACATGCGCTTCTATGCGGCCGAGATCATCCTGGGCCTGGA GACATGCGCTTCTATGCGGCCGAAATCATCCTGGGCCTGGA < 41bp 0.783691556467067 0.565288398440945 0.8856733 0.8151206 prediction 0.436806316052243 Functional Loss - GRK2 ENSG00000173020 CDS Human protein_coding chr11:67049363 chr11:67049366 synonymous SNV . 0 24 hm5C_associated_SNPs_83054 0 0 1 0 2 GRK2 chr11:67049423 5'GT 67049423 Upstream 58bp
chr6 167709603 167709603 1 + C T rs34631973 167709601 + 167709581 167709621 41 CAGTGCACATACCTCACGATCACGGGAAACACACATGCAGA CAGTGCACATACCTCACGATCATGGGAAACACACATGCAGA < 41bp 0.830868638629212 0.61246915590332 0.88875777 0.9209999 prediction 0.436798965451785 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167709601 chr6:167709603 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_83055 0 0 0 0 1 UNC93A chr6:167709520 3'AG 167709520 Downstream 84bp
chr3 125701180 125701180 1 + G A UCEC 125701177 + 125701157 125701197 41 TGACCACAATGGTGGGTTGCCCCGAATCCCATTCAGCACCT TGACCACAATGGTGGGTTGCCCCAAATCCCATTCAGCACCT < 41bp 0.757435624796173 0.539037261353516 0.09051773 0.8213716 prediction 0.436796726885315 Functional Loss - ROPN1B ENSG00000114547 CDS Human protein_coding chr3:125701177 chr3:125701180 nonsynonymous SNV 0.010 1 24 hm5C_associated_SNPs_83058 0 0 0 0 1 ROPN1B chr3:125701113 3'AG 125701113 Downstream 68bp
chr9 96305745 96305745 1 + C T rs114775999 96305742 + 96305722 96305762 41 ACTCACCTCATGGTGCTCTGCTGCGTCTTACGGTGGGTGCC ACTCACCTCATGGTGCTCTGCTGTGTCTTACGGTGGGTGCC < 41bp 0.724069017043075 0.505673609575189 0.17063418 0.10895407 prediction 0.436790814935772 Functional Loss - FAM120A ENSG00000048828 CDS Human protein_coding chr9:96305742 chr9:96305745 synonymous SNV . 0 24 hm5C_associated_SNPs_83060 0 0 1 0 1 FAM120A chr9:96305753 5'GT 96305753 Upstream 9bp
chr17 53237245 53237245 1 + T C HNSC 53237244 + 53237224 53237264 41 GGAGAATGAAGAGGATTGCTCTAGAGAACTCCCCAACCAGA GGAGAATGAAGAGGATTGCTCCAGAGAACTCCCCAACCAGA < 41bp 0.718389330227817 0.482481716672828 0.82330346 0.89675176 prediction 0.436778660455634 Functional Loss - STXBP4 ENSG00000166263 CDS Human protein_coding chr17:53237244 chr17:53237245 synonymous SNV . 0 22 hm5C_associated_SNPs_83065 0 0 1 0 1 STXBP4 chr17:53237158 3'AG 53237158 Downstream 88bp
chr11 65305494 65305494 1 + G A KIRP 65305491 + 65305471 65305511 41 CCAGAGTCCGACTGGAGCAGCTGGGAAGCTGAGGGCTCCTG CCAGAGTCCGACTGGAGCAGCTGAGAAGCTGAGGGCTCCTG < 41bp 0.718381893386698 0.473698879262215 0.8589933 0.89743173 prediction 0.436763786773396 Functional Loss - SCYL1 ENSG00000142186 CDS Human protein_coding chr11:65305491 chr11:65305494 stopgain 0.970 0 24 hm5C_associated_SNPs_83069 0 0 0 0 2 SCYL1 chr11:65305438 3'AG 65305438 Downstream 57bp
chr11 65305494 65305494 1 + G A KIRP 65305491 + 65305471 65305511 41 CCAGAGTCCGACTGGAGCAGCTGGGAAGCTGAGGGCTCCTG CCAGAGTCCGACTGGAGCAGCTGAGAAGCTGAGGGCTCCTG < 41bp 0.718381893386698 0.473698879262215 0.8589933 0.89743173 prediction 0.436763786773396 Functional Loss - SCYL1 ENSG00000142186 CDS Human protein_coding chr11:65305491 chr11:65305494 stopgain 0.970 0 24 hm5C_associated_SNPs_83069 0 0 0 0 2 SCYL1 chr11:65305475 3'AG 65305475 Downstream 20bp
chr7 128489476 128489476 1 + G A LUSC 128489473 + 128489453 128489493 41 GGTGAGGGGAAGGTGACATGCACGGTGTCCACGCCGGATGG GGTGAGGGGAAGGTGACATGCACAGTGTCCACGCCGGATGG < 41bp 0.791354264256541 0.572986014276164 0.20559293 0.044231266 prediction 0.436736499960754 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128489473 chr7:128489476 synonymous SNV . 0 24 hm5C_associated_SNPs_83078 0 0 1 0 1 FLNC chr7:128489385 3'AG 128489385 Downstream 92bp
chr18 47093860 47093860 1 + C T UCEC 47093857 + 47093837 47093877 41 TGCACAAACTCGTGTCAGCCCTGCACACAAGAGAGAAAGAC TGCACAAACTCGTGTCAGCCCTGTACACAAGAGAGAAAGAC < 41bp 0.718368098149558 0.479916265601436 0.038820952 0.041226566 prediction 0.436736196299117 Functional Loss - LIPG ENSG00000101670 CDS Human protein_coding chr18:47093857 chr18:47093860 nonsynonymous SNV 0.112 2 24 hm5C_associated_SNPs_83080 0 0 0 0 1 LIPG chr18:47093812 3'AG 47093812 Downstream 49bp
chr7 27194805 27194805 1 - C T OV 27194808 - 27194788 27194828 41 GCGGGGCCGCCAGACCTACACGCGCTACCAGACGCTGGAGC GCGGGGCCGCCAGACCTACACGCACTACCAGACGCTGGAGC < 41bp 0.794315116893761 0.575947051112448 0.34431314 0.050600648 prediction 0.436736131562625 Functional Loss - HOXA7 ENSG00000122592 CDS Human protein_coding chr7:27194808 chr7:27194805 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_83081 0 0 0 0 1 HOXA7 chr7:27194841 3'AG 27194841 Downstream 37bp
chr15 74588161 74588161 1 + G A SKCM 74588158 + 74588138 74588178 41 CTACCTTGGACCCCAAGATCCTGGATAAGAAGCTGAGAACC CTACCTTGGACCCCAAGATCCTGAATAAGAAGCTGAGAACC < 41bp 0.763623824704744 0.545255765033637 0.7913471 0.21797478 prediction 0.436736119342215 Functional Loss - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74588158 chr15:74588161 nonsynonymous SNV 0.858 1 24 hm5C_associated_SNPs_83082 0 0 0 0 1 CCDC33 chr15:74588095 3'AG 74588095 Downstream 67bp
chr16 57504209 57504209 1 + C T UCEC 57504207 + 57504187 57504227 41 CTCAGGCCAAAGAGTGAGTACTCGGAGCTGGATGAGGATGA CTCAGGCCAAAGAGTGAGTACTTGGAGCTGGATGAGGATGA < 41bp 0.718365559715111 0.420263128580571 0.33020824 0.3049333 prediction 0.436731119430222 Functional Loss - POLR2C ENSG00000102978 CDS Human protein_coding chr16:57504207 chr16:57504209 nonsynonymous SNV 0.975 4 23 hm5C_associated_SNPs_83083 0 0 1 0 2 POLR2C chr16:57504192 3'AG 57504192 Downstream 18bp
chr16 57504209 57504209 1 + C T UCEC 57504207 + 57504187 57504227 41 CTCAGGCCAAAGAGTGAGTACTCGGAGCTGGATGAGGATGA CTCAGGCCAAAGAGTGAGTACTTGGAGCTGGATGAGGATGA < 41bp 0.718365559715111 0.420263128580571 0.33020824 0.3049333 prediction 0.436731119430222 Functional Loss - POLR2C ENSG00000102978 CDS Human protein_coding chr16:57504207 chr16:57504209 nonsynonymous SNV 0.975 4 23 hm5C_associated_SNPs_83083 0 0 1 0 2 POLR2C chr16:57504266 5'GT 57504266 Upstream 58bp
chr20 43945423 43945423 1 + G A rs61754060 43945420 + 43945400 43945440 41 CCATCACAATCCCCATGAGCCTGGTGCGCGCCGACGGGCTC CCATCACAATCCCCATGAGCCTGATGCGCGCCGACGGGCTC < 41bp 0.767953454464503 0.549592404218131 0.3919936 0.16582632 prediction 0.436722100492745 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43945420 chr20:43945423 nonsynonymous SNV 0.978 1 24 hm5C_associated_SNPs_83089 0 0 0 0 1 RBPJL chr20:43945326 3'AG 43945326 Downstream 98bp
chr20 30231314 30231314 1 + G A SKCM 30231311 + 30231291 30231331 41 TCTTCATTGGATTCGCAGCTCTGGTGATTTGGTGGCAGCGG TCTTCATTGGATTCGCAGCTCTGATGATTTGGTGGCAGCGG < 41bp 0.718356516839829 0.474118739406266 0.23065314 0.07317793 prediction 0.436713033679659 Functional Loss - COX4I2 ENSG00000131055 CDS Human protein_coding chr20:30231311 chr20:30231314 nonsynonymous SNV 0.908 1 24 hm5C_associated_SNPs_83093 0 0 0 0 1 COX4I2 chr20:30231338 5'GT 30231338 Upstream 25bp
chr17 48750833 48750833 1 + C T LGG 48750831 + 48750811 48750851 41 CCTGCTGCCTTCTCCCCAGACGCGAGTGCTGGTGACGCACG CCTGCTGCCTTCTCCCCAGACGTGAGTGCTGGTGACGCACG < 41bp 0.850961469522014 0.63260733694079 0.3410218 0.33521098 prediction 0.436708265162447 Functional Loss - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48750831 chr17:48750833 stopgain 0.980 1 23 hm5C_associated_SNPs_83094 0 0 0 0 1 ABCC3 chr17:48750830 3'AG 48750830 Downstream 4bp
chr20 43836061 43836061 1 + C T HNSC 43836059 + 43836039 43836079 41 GTGAATTTTCCCAATTTCCACACGGACAAAAGGGCCAGCAC GTGAATTTTCCCAATTTCCACATGGACAAAAGGGCCAGCAC < 41bp 0.718346721154746 0.46793237025339 0.31259304 0.36568332 prediction 0.436693442309493 Functional Loss - SEMG1 ENSG00000124233 CDS Human protein_coding chr20:43836059 chr20:43836061 synonymous SNV . 0 23 hm5C_associated_SNPs_83096 0 0 0 0 1 SEMG1 chr20:43836015 3'AG 43836015 Downstream 47bp
chr6 43100376 43100376 1 + G A UCEC 43100373 + 43100353 43100393 41 GCTGGTGTCTACACCTGCCACGCGGCCAACCTGGCTGGTCA GCTGGTGTCTACACCTGCCACGCAGCCAACCTGGCTGGTCA < 41bp 0.718343827544575 0.467643116881482 0.17101964 0.01836595 prediction 0.436687655089151 Functional Loss - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43100373 chr6:43100376 synonymous SNV . 0 24 hm5C_associated_SNPs_83097 0 0 1 0 1 PTK7 chr6:43100425 5'GT 43100425 Upstream 50bp
chr13 51918452 51918452 1 + C T GBM 51918449 + 51918429 51918469 41 CTACCCACCTCCAGCCAAGGCACCGAGATGGAGCTGGCCTG CTACCCACCTCCAGCCAAGGCACTGAGATGGAGCTGGCCTG < 41bp 0.731576302911079 0.51323272567482 0.033084214 0.074165195 prediction 0.436687154472518 Functional Loss - SERPINE3 ENSG00000253309 CDS Human protein_coding chr13:51918449 chr13:51918452 synonymous SNV . 0 24 hm5C_associated_SNPs_83098 0 0 0 0 1 SERPINE3 chr13:51918388 3'AG 51918388 Downstream 65bp
chr3 52512227 52512227 1 + G A BLCA 52512224 + 52512204 52512244 41 TAAACCTGGCAGGCAACCTCCTAGAGAGTCTGAGTGGCCTG TAAACCTGGCAGGCAACCTCCTAAAGAGTCTGAGTGGCCTG < 41bp 0.761206170289375 0.542862762161246 0.19821557 0.07456729 prediction 0.436686816256257 Functional Loss - NISCH ENSG00000010322 CDS Human protein_coding chr3:52512224 chr3:52512227 nonsynonymous SNV 0.968 1 24 hm5C_associated_SNPs_83099 0 0 1 0 1 NISCH chr3:52512298 5'GT 52512298 Upstream 72bp
chr22 24909395 24909395 1 + G A UCEC 24909392 + 24909372 24909412 41 AGCCGTGGTGATCTCCAATTCCGGAGCAGTCCTGGGAAAGA AGCCGTGGTGATCTCCAATTCCGAAGCAGTCCTGGGAAAGA < 41bp 0.795164031660091 0.576826166976994 0.95755464 0.9419493 prediction 0.436675729366193 Functional Loss - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24909392 chr22:24909395 nonsynonymous SNV 0.955 5 24 hm5C_associated_SNPs_83100 0 0 0 0 1 UPB1 chr22:24909453 5'GT 24909453 Upstream 59bp
chr9 90401711 90401711 1 + A C KIRP 90401707 + 90401687 90401727 41 GTCATCTTATCGAGGAGGCTCTGCAGATGCTAAGTGGTGGG GTCATCTTATCGAGGAGGCTCTGCCGATGCTAAGTGGTGGG < 41bp 0.718333252005943 0.339090530465453 0.2773621 0.17083168 prediction 0.436666504011885 Functional Loss - CTSL3P ENSG00000188029 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:90401707 chr9:90401711 . . 0 25 hm5C_associated_SNPs_83103 0 0 0 0 1 CTSL3P chr9:90401662 3'AG 90401662 Downstream 50bp
chr1 38261468 38261468 1 + G T UCEC 38261466 + 38261446 38261486 41 TGATGATAACGGGGAGCCCTCAGATGACCTGGTGCCCGCCA TGATGATAACGGGGAGCCCTCATATGACCTGGTGCCCGCCA < 41bp 0.718327479015691 0.349466221206036 0.93394697 0.18130973 prediction 0.436654958031382 Functional Loss - MANEAL ENSG00000185090 CDS Human protein_coding chr1:38261466 chr1:38261468 nonsynonymous SNV 0.986 5 23 hm5C_associated_SNPs_83106 0 0 1 0 2 MANEAL chr1:38261409 3'AG 38261409 Downstream 60bp
chr1 38261468 38261468 1 + G T UCEC 38261466 + 38261446 38261486 41 TGATGATAACGGGGAGCCCTCAGATGACCTGGTGCCCGCCA TGATGATAACGGGGAGCCCTCATATGACCTGGTGCCCGCCA < 41bp 0.718327479015691 0.349466221206036 0.93394697 0.18130973 prediction 0.436654958031382 Functional Loss - MANEAL ENSG00000185090 CDS Human protein_coding chr1:38261466 chr1:38261468 nonsynonymous SNV 0.986 5 23 hm5C_associated_SNPs_83106 0 0 1 0 2 MANEAL chr1:38261518 5'GT 38261518 Upstream 51bp
chr11 113813888 113813888 1 + G A rs145795113 113813885 + 113813865 113813905 41 CAACATGTCCAACCAGGTGCCACGGAGTGTAGGGAGCACCC CAACATGTCCAACCAGGTGCCACAGAGTGTAGGGAGCACCC < 41bp 0.780757678281423 0.562431721818186 0.1844041 0.13702726 prediction 0.436651912926474 Functional Loss - HTR3B ENSG00000149305 CDS Human protein_coding chr11:113813885 chr11:113813888 nonsynonymous SNV 0.010 1 24 hm5C_associated_SNPs_83107 0 0 0 0 1 HTR3B chr11:113813914 5'GT 113813914 Upstream 27bp
chr15 29398931 29398931 1 + C T UCEC 29398929 + 29398909 29398949 41 AATGGCGGCCCGGCTGCCCGCTCGGGGAAGCTGAGCATCGG AATGGCGGCCCGGCTGCCCGCTTGGGGAAGCTGAGCATCGG < 41bp 0.846817342185893 0.628495560395888 0.35019964 0.25763822 prediction 0.436643563580011 Functional Loss - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29398929 chr15:29398931 nonsynonymous SNV 0.905 3 23 hm5C_associated_SNPs_83108 0 0 1 0 1 APBA2 chr15:29399022 5'GT 29399022 Upstream 92bp
chr1 203452396 203452396 1 + C T COAD 203452394 + 203452374 203452414 41 AGCCAACAAGACGACCAAGACCCGGGACTGGGCCCGGGCGC AGCCAACAAGACGACCAAGACCTGGGACTGGGCCCGGGCGC < 41bp 0.807281407553114 0.588960847732283 0.4070627 0.33650297 prediction 0.436641119641662 Functional Loss - PRELP ENSG00000188783 CDS Human protein_coding chr1:203452394 chr1:203452396 synonymous SNV . 0 23 hm5C_associated_SNPs_83110 0 0 0 0 1 PRELP chr1:203452297 3'AG 203452297 Downstream 100bp
chr1 35559010 35559010 1 + G A rs61746538 35559007 + 35558987 35559027 41 CCTCCCAGGTTCAAGCGATTCTCGTGCCTCAGCCTCCCGAG CCTCCCAGGTTCAAGCGATTCTCATGCCTCAGCCTCCCGAG < 41bp 0.736224166040945 0.517909816200004 0.32794827 0.14309794 prediction 0.436628699681882 Functional Loss - ZMYM1 ENSG00000197056 UTR5 Human protein_coding chr1:35559007 chr1:35559010 . . 0 24 hm5C_associated_SNPs_83115 0 0 0 0 3 ZMYM1 chr1:35558921 3'AG 35558921 Downstream 90bp
chr1 35559010 35559010 1 + G A rs61746538 35559007 + 35558987 35559027 41 CCTCCCAGGTTCAAGCGATTCTCGTGCCTCAGCCTCCCGAG CCTCCCAGGTTCAAGCGATTCTCATGCCTCAGCCTCCCGAG < 41bp 0.736224166040945 0.517909816200004 0.32794827 0.14309794 prediction 0.436628699681882 Functional Loss - ZMYM1 ENSG00000197056 UTR5 Human protein_coding chr1:35559007 chr1:35559010 . . 0 24 hm5C_associated_SNPs_83115 0 0 0 0 3 ZMYM1 chr1:35558995 3'AG 35558995 Downstream 16bp
chr1 35559010 35559010 1 + G A rs61746538 35559007 + 35558987 35559027 41 CCTCCCAGGTTCAAGCGATTCTCGTGCCTCAGCCTCCCGAG CCTCCCAGGTTCAAGCGATTCTCATGCCTCAGCCTCCCGAG < 41bp 0.736224166040945 0.517909816200004 0.32794827 0.14309794 prediction 0.436628699681882 Functional Loss - ZMYM1 ENSG00000197056 UTR5 Human protein_coding chr1:35559007 chr1:35559010 . . 0 24 hm5C_associated_SNPs_83115 0 0 0 0 3 ZMYM1 chr1:35559042 5'GT 35559042 Upstream 33bp
chr17 73487957 73487957 1 + G A UCEC 73487954 + 73487934 73487974 41 GTGAGCTTCAGCAGGGACACCGAGGGTGGTGAAGAAGAGCC GTGAGCTTCAGCAGGGACACCGAAGGTGGTGAAGAAGAGCC < 41bp 0.718304659634339 0.46774710102532 0.8110323 0.31244224 prediction 0.436609319268677 Functional Loss - TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73487954 chr17:73487957 synonymous SNV . 0 24 hm5C_associated_SNPs_83119 0 0 1 0 1 TMEM94 chr17:73487981 5'GT 73487981 Upstream 25bp
chr9 135864540 135864540 1 + C T SKCM 135864537 + 135864517 135864557 41 TGTGACATCTGCGGCAAAACCTTCGGCCACGCTGTGAGCCT TGTGACATCTGCGGCAAAACCTTTGGCCACGCTGTGAGCCT < 41bp 0.730830120252911 0.5125263943072 0.13792515 0.0861029 prediction 0.436607451891422 Functional Loss - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135864537 chr9:135864540 synonymous SNV . 0 24 hm5C_associated_SNPs_83120 0 0 0 0 2 GFI1B chr9:135864448 3'AG 135864448 Downstream 93bp
chr9 135864540 135864540 1 + C T SKCM 135864537 + 135864517 135864557 41 TGTGACATCTGCGGCAAAACCTTCGGCCACGCTGTGAGCCT TGTGACATCTGCGGCAAAACCTTTGGCCACGCTGTGAGCCT < 41bp 0.730830120252911 0.5125263943072 0.13792515 0.0861029 prediction 0.436607451891422 Functional Loss - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135864537 chr9:135864540 synonymous SNV . 0 24 hm5C_associated_SNPs_83120 0 0 0 0 2 GFI1B chr9:135864585 5'GT 135864585 Upstream 46bp
chr1 156145410 156145410 1 + G A BLCA 156145407 + 156145387 156145427 41 TGGGCATGTGCCAGTGGCCCCATGAGCAGGAGCCTTCGGCC TGGGCATGTGCCAGTGGCCCCATAAGCAGGAGCCTTCGGCC < 41bp 0.718302029551207 0.463957626211499 0.13770002 0.06341484 prediction 0.436604059102413 Functional Loss - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156145407 chr1:156145410 nonsynonymous SNV 0.973 0 24 hm5C_associated_SNPs_83121 0 0 0 0 2 SEMA4A chr1:156145347 3'AG 156145347 Downstream 64bp
chr1 156145410 156145410 1 + G A BLCA 156145407 + 156145387 156145427 41 TGGGCATGTGCCAGTGGCCCCATGAGCAGGAGCCTTCGGCC TGGGCATGTGCCAGTGGCCCCATAAGCAGGAGCCTTCGGCC < 41bp 0.718302029551207 0.463957626211499 0.13770002 0.06341484 prediction 0.436604059102413 Functional Loss - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156145407 chr1:156145410 nonsynonymous SNV 0.973 0 24 hm5C_associated_SNPs_83121 0 0 0 0 2 SEMA4A chr1:156145447 5'GT 156145447 Upstream 38bp
chr5 94772587 94772587 1 + C T rs543416602 94772585 + 94772565 94772605 41 TGGTCCAGGGGGATTATCGCCACGAAATGAACCTTTTGGAA TGGTCCAGGGGGATTATCGCCATGAAATGAACCTTTTGGAA < 41bp 0.862718529943138 0.644418308607868 0.18687513 0.12189865 prediction 0.436600442670541 Functional Loss - FAM81B ENSG00000153347 CDS Human protein_coding chr5:94772585 chr5:94772587 synonymous SNV . 0 23 hm5C_associated_SNPs_83123 0 0 0 0 2 FAM81B chr5:94772504 3'AG 94772504 Downstream 84bp
chr5 94772587 94772587 1 + C T rs543416602 94772585 + 94772565 94772605 41 TGGTCCAGGGGGATTATCGCCACGAAATGAACCTTTTGGAA TGGTCCAGGGGGATTATCGCCATGAAATGAACCTTTTGGAA < 41bp 0.862718529943138 0.644418308607868 0.18687513 0.12189865 prediction 0.436600442670541 Functional Loss - FAM81B ENSG00000153347 CDS Human protein_coding chr5:94772585 chr5:94772587 synonymous SNV . 0 23 hm5C_associated_SNPs_83123 0 0 0 0 2 FAM81B chr5:94772610 5'GT 94772610 Upstream 24bp
chr8 22171906 22171906 1 + G T UCEC 22171903 + 22171883 22171923 41 GATGATCTCTATGGGGCCATCAAGAAGCTGTGCTGTGTGCA GATGATCTCTATGGGGCCATCAATAAGCTGTGCTGTGTGCA < 41bp 0.718299668350278 0.321226863242857 0.83342373 0.15627193 prediction 0.436599336700557 Functional Loss - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22171903 chr8:22171906 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_83124 0 0 0 0 2 PIWIL2 chr8:22171841 3'AG 22171841 Downstream 66bp
chr8 22171906 22171906 1 + G T UCEC 22171903 + 22171883 22171923 41 GATGATCTCTATGGGGCCATCAAGAAGCTGTGCTGTGTGCA GATGATCTCTATGGGGCCATCAATAAGCTGTGCTGTGTGCA < 41bp 0.718299668350278 0.321226863242857 0.83342373 0.15627193 prediction 0.436599336700557 Functional Loss - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22171903 chr8:22171906 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_83124 0 0 0 0 2 PIWIL2 chr8:22171942 5'GT 22171942 Upstream 37bp
chr3 50144929 50144929 1 + C T BLCA 50144927 + 50144907 50144947 41 GGTTTCAGAGACTTGGTCCTCTCAGATGGTAACCGCGTCAG GGTTTCAGAGACTTGGTCCTCTTAGATGGTAACCGCGTCAG < 41bp 0.718296546653966 0.434857429222427 0.2730626 0.2306853 prediction 0.436593093307932 Functional Loss - RBM5 ENSG00000003756 CDS Human protein_coding chr3:50144927 chr3:50144929 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_83125 0 0 1 0 2 RBM5 chr3:50144915 3'AG 50144915 Downstream 15bp
chr3 50144929 50144929 1 + C T BLCA 50144927 + 50144907 50144947 41 GGTTTCAGAGACTTGGTCCTCTCAGATGGTAACCGCGTCAG GGTTTCAGAGACTTGGTCCTCTTAGATGGTAACCGCGTCAG < 41bp 0.718296546653966 0.434857429222427 0.2730626 0.2306853 prediction 0.436593093307932 Functional Loss - RBM5 ENSG00000003756 CDS Human protein_coding chr3:50144927 chr3:50144929 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_83125 0 0 1 0 2 RBM5 chr3:50145002 5'GT 50145002 Upstream 74bp
chr13 73428277 73428277 1 + G A SKCM 73428274 + 73428254 73428294 41 AAAAGGATGCTTTAGAAAAACACGATCAGCTCTTAGACAGG AAAAGGATGCTTTAGAAAAACACAATCAGCTCTTAGACAGG < 41bp 0.748414853760171 0.530127443986114 0.076103 0.03890395 prediction 0.436574819548114 Functional Loss - PIBF1 ENSG00000083535 CDS Human protein_coding chr13:73428274 chr13:73428277 nonsynonymous SNV 0.970 0 24 hm5C_associated_SNPs_83128 0 0 1 0 2 PIBF1 chr13:73428195 3'AG 73428195 Downstream 83bp
chr13 73428277 73428277 1 + G A SKCM 73428274 + 73428254 73428294 41 AAAAGGATGCTTTAGAAAAACACGATCAGCTCTTAGACAGG AAAAGGATGCTTTAGAAAAACACAATCAGCTCTTAGACAGG < 41bp 0.748414853760171 0.530127443986114 0.076103 0.03890395 prediction 0.436574819548114 Functional Loss - PIBF1 ENSG00000083535 CDS Human protein_coding chr13:73428274 chr13:73428277 nonsynonymous SNV 0.970 0 24 hm5C_associated_SNPs_83128 0 0 1 0 2 PIBF1 chr13:73428293 5'GT 73428293 Upstream 17bp
chr16 67902442 67902442 1 + G A UCEC 67902439 + 67902419 67902459 41 AAAATTCAGCACAGCATCACCGCGCAGGACCATCAGCCCAC AAAATTCAGCACAGCATCACCGCACAGGACCATCAGCCCAC < 41bp 0.792521740938504 0.574235473381369 0.048690915 0.033789635 prediction 0.43657253511427 Functional Loss - NUTF2 ENSG00000102898 CDS Human protein_coding chr16:67902439 chr16:67902442 synonymous SNV . 0 24 hm5C_associated_SNPs_83130 0 0 1 0 2 NUTF2 chr16:67902404 3'AG 67902404 Downstream 39bp
chr16 67902442 67902442 1 + G A UCEC 67902439 + 67902419 67902459 41 AAAATTCAGCACAGCATCACCGCGCAGGACCATCAGCCCAC AAAATTCAGCACAGCATCACCGCACAGGACCATCAGCCCAC < 41bp 0.792521740938504 0.574235473381369 0.048690915 0.033789635 prediction 0.43657253511427 Functional Loss - NUTF2 ENSG00000102898 CDS Human protein_coding chr16:67902439 chr16:67902442 synonymous SNV . 0 24 hm5C_associated_SNPs_83130 0 0 1 0 2 NUTF2 chr16:67902502 5'GT 67902502 Upstream 61bp
chr20 44463646 44463646 1 + G A UCEC 44463643 + 44463623 44463663 41 GTGGGGCAGTCAGCTCCTGGCGCGGCAGCTGCAGGATTTCT GTGGGGCAGTCAGCTCCTGGCGCAGCAGCTGCAGGATTTCT < 41bp 0.735126434272804 0.516844413011938 0.468331 0.21275732 prediction 0.436564042521733 Functional Loss - SNX21 ENSG00000124104 CDS Human protein_coding chr20:44463643 chr20:44463646 nonsynonymous SNV 0.010 2 24 hm5C_associated_SNPs_83132 0 0 1 0 1 SNX21 chr20:44463598 3'AG 44463598 Downstream 49bp
chr16 847845 847845 1 + C T COAD 847843 + 847823 847863 41 CCCTGTGGCCCCGCAGGGGACACGGCCCCGGAGCAGGACTC CCCTGTGGCCCCGCAGGGGACATGGCCCCGGAGCAGGACTC < 41bp 0.753226583454537 0.534948468546211 0.46680418 0.5624724 prediction 0.436556229816652 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:847843 chr16:847845 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_83133 0 0 1 0 1 CHTF18 chr16:847839 3'AG 847839 Downstream 7bp
chr14 24620799 24620799 1 + C T SKCM 24620796 + 24620776 24620816 41 GGGCCCTGACTGAGCTACAGCGCCAACGCCTAGAGCCCTTC GGGCCCTGACTGAGCTACAGCGCTAACGCCTAGAGCCCTTC < 41bp 0.731007495027851 0.512732419683502 0.39804453 0.35989755 prediction 0.436550150688699 Functional Loss - RNF31 ENSG00000092098;ENSG00000259529 CDS Human other chr14:24620796 chr14:24620799 stopgain 0.996 1 24 hm5C_associated_SNPs_83134 0 0 1 0 1 RNF31 chr14:24620879 5'GT 24620879 Upstream 81bp
chr11 65688123 65688123 1 + C T UCEC 65688121 + 65688101 65688141 41 AAGAAGCTGTCCGGGACAGACTCGGAGCAGGAGGTGAGTGA AAGAAGCTGTCCGGGACAGACTTGGAGCAGGAGGTGAGTGA < 41bp 0.842657910334507 0.624387240645555 0.1944057 0.10735455 prediction 0.436541339377904 Functional Loss - DRAP1 ENSG00000175550 CDS Human protein_coding chr11:65688121 chr11:65688123 nonsynonymous SNV 0.901 4 23 hm5C_associated_SNPs_83137 0 0 1 0 2 DRAP1 chr11:65688040 3'AG 65688040 Downstream 84bp
chr11 65688123 65688123 1 + C T UCEC 65688121 + 65688101 65688141 41 AAGAAGCTGTCCGGGACAGACTCGGAGCAGGAGGTGAGTGA AAGAAGCTGTCCGGGACAGACTTGGAGCAGGAGGTGAGTGA < 41bp 0.842657910334507 0.624387240645555 0.1944057 0.10735455 prediction 0.436541339377904 Functional Loss - DRAP1 ENSG00000175550 CDS Human protein_coding chr11:65688121 chr11:65688123 nonsynonymous SNV 0.901 4 23 hm5C_associated_SNPs_83137 0 0 1 0 2 DRAP1 chr11:65688133 5'GT 65688133 Upstream 11bp
chr18 32455347 32455347 1 + G T LUSC 32455344 + 32455324 32455364 41 CAGGAGTAGGGGGAGATGTACAAGAGGCATTTGCACAAAGT CAGGAGTAGGGGGAGATGTACAATAGGCATTTGCACAAAGT < 41bp 0.718265019197069 0.400117768092594 0.84389687 0.17260936 prediction 0.436530038394138 Functional Loss - DTNA ENSG00000134769 CDS Human protein_coding chr18:32455344 chr18:32455347 stopgain 0.996 1 24 hm5C_associated_SNPs_83139 0 0 0 0 1 DTNA chr18:32455362 5'GT 32455362 Upstream 16bp
chr14 95108191 95108191 1 + C T rs545997875 95108189 + 95108169 95108209 41 TCGGGGCCTGGGAGAAGGACCTCGGCAGTGAAACCACAGCG TCGGGGCCTGGGAGAAGGACCTTGGCAGTGAAACCACAGCG < 41bp 0.773933517708186 0.555668753170029 0.507739 0.40079448 prediction 0.436529529076315 Functional Loss - SERPINA13P ENSG00000187483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr14:95108189 chr14:95108191 . . 0 23 hm5C_associated_SNPs_83140 0 0 0 0 1 SERPINA13P chr14:95108237 5'GT 95108237 Upstream 47bp
chr20 58569372 58569372 1 + G A UCEC 58569369 + 58569349 58569389 41 TCTGACATCAATGACAACGTCCCGACTCTCCGGCCACGTTC TCTGACATCAATGACAACGTCCCAACTCTCCGGCCACGTTC < 41bp 0.718258534036023 0.47358828766346 0.04028988 0.015963554 prediction 0.436517068072047 Functional Loss - CDH26 ENSG00000124215 CDS Human protein_coding chr20:58569369 chr20:58569372 synonymous SNV . 0 24 hm5C_associated_SNPs_83142 0 0 0 0 1 CDH26 chr20:58569305 3'AG 58569305 Downstream 68bp
chr11 1594264 1594264 1 + G A rs553909697 1594261 + 1594241 1594281 41 GAACACCTCCGCGCGTGCGGCGGGGACGCGGCGAGTCCGGG GAACACCTCCGCGCGTGCGGCGGAGACGCGGCGAGTCCGGG < 41bp 0.757424156389146 0.53916867827959 0.9267394 0.92062414 prediction 0.436510956219111 Functional Loss - KRTAP5-AS1 ENSG00000233930 ncRNA_exonic Human antisense chr11:1594261 chr11:1594264 . . 0 24 hm5C_associated_SNPs_83143 0 0 1 0 1 KRTAP5-AS1 chr11:1594298 5'GT 1594298 Upstream 35bp
chr11 66240813 66240813 1 + C T UCEC 66240811 + 66240791 66240831 41 CTGCCCAGAGCACCATCTCCCGCTATGCCTGCCGCATCCTC CTGCCCAGAGCACCATCTCCCGTTATGCCTGCCGCATCCTC < 41bp 0.718255080490098 0.433005548325556 0.17749855 0.16572937 prediction 0.436510160980197 Functional Loss - PELI3 ENSG00000174516 CDS Human protein_coding chr11:66240811 chr11:66240813 synonymous SNV . 0 23 hm5C_associated_SNPs_83144 0 0 0 0 1 PELI3 chr11:66240906 5'GT 66240906 Upstream 94bp
chr3 52554978 52554978 1 + G A SKCM 52554975 + 52554955 52554995 41 CGCAATTGTGTCACCACCACCTGGAAGCCCAGCTGCTGCCC CGCAATTGTGTCACCACCACCTGAAAGCCCAGCTGCTGCCC < 41bp 0.718251618603047 0.480249999972382 0.7618917 0.20299941 prediction 0.436503237206093 Functional Loss - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52554975 chr3:52554978 stopgain 0.998 1 24 hm5C_associated_SNPs_83147 0 0 0 0 1 STAB1 chr3:52555021 5'GT 52555021 Upstream 44bp
chr16 28900193 28900193 1 + C T UCEC 28900190 + 28900170 28900210 41 GCCATTGTAAGAAGCTTGCCCTCCGTAGAGACCCTGGGCTG GCCATTGTAAGAAGCTTGCCCTCTGTAGAGACCCTGGGCTG < 41bp 0.753970290991736 0.535726762907849 0.06590098 0.12857977 prediction 0.436487056167775 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28900190 chr16:28900193 synonymous SNV . 0 24 hm5C_associated_SNPs_83152 0 0 0 0 1 ATP2A1 chr16:28900274 5'GT 28900274 Upstream 82bp
chr19 39760613 39760613 1 + G T CESC 39760610 + 39760590 39760630 41 CAACCTCTTCCGCCTCCTCACGCGAGACCTGAATTGTGTTG CAACCTCTTCCGCCTCCTCACGCTAGACCTGAATTGTGTTG < 41bp 0.928166964881594 0.70992867046954 0.20996833 0.053127706 prediction 0.436476588824108 Functional Loss - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39760610 chr19:39760613 nonsynonymous SNV 0.051 1 24 hm5C_associated_SNPs_83156 0 0 0 0 1 IFNL2 chr19:39760555 3'AG 39760555 Downstream 59bp
chr11 65306007 65306007 1 + C T SKCM 65306004 + 65305984 65306024 41 GAGAGGAAGGTGGCCAAGGGCCCCATGAAGCTGGGAGCCCG GAGAGGAAGGTGGCCAAGGGCCCTATGAAGCTGGGAGCCCG < 41bp 0.718233933728895 0.498797031135705 0.1934079 0.3041057 prediction 0.436467867457789 Functional Loss - SCYL1 ENSG00000142186 CDS Human protein_coding chr11:65306004 chr11:65306007 nonsynonymous SNV 0.992 2 24 hm5C_associated_SNPs_83158 0 0 1 0 1 SCYL1 chr11:65305913 3'AG 65305913 Downstream 95bp
chrX 10093120 10093120 1 + C T UCEC 10093117 + 10093097 10093137 41 CGTGCTGCAGCTGAAGAACCCGGCGGGGCTGGCGGTGAAGG CGTGCTGCAGCTGAAGAACCCGGTGGGGCTGGCGGTGAAGG < 41bp 0.718228197305031 0.493097362091247 0.6568363 0.6387961 prediction 0.436456394610061 Functional Loss - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10093117 chrX:10093120 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_83161 0 0 0 0 1 WWC3 chrX:10093064 3'AG 10093064 Downstream 57bp
chr11 61490358 61490358 1 + C T SARC 61490356 + 61490336 61490376 41 CTGGTGATCGAGTTCATCTACGCCATCGTGGGCATCGTCTG CTGGTGATCGAGTTCATCTACGTCATCGTGGGCATCGTCTG < 41bp 0.718226785238093 0.436146823026487 0.062461764 0.06436506 prediction 0.436453570476186 Functional Loss - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61490356 chr11:61490358 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_83162 0 0 0 0 2 DAGLA chr11:61490331 3'AG 61490331 Downstream 28bp
chr11 61490358 61490358 1 + C T SARC 61490356 + 61490336 61490376 41 CTGGTGATCGAGTTCATCTACGCCATCGTGGGCATCGTCTG CTGGTGATCGAGTTCATCTACGTCATCGTGGGCATCGTCTG < 41bp 0.718226785238093 0.436146823026487 0.062461764 0.06436506 prediction 0.436453570476186 Functional Loss - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61490356 chr11:61490358 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_83162 0 0 0 0 2 DAGLA chr11:61490432 5'GT 61490432 Upstream 75bp
chr17 78195409 78195409 1 + G A UCEC 78195406 + 78195386 78195426 41 TCAGGCCAGGTCCTCTGGCCCCGGGATGGCCCCGAGCGCCT TCAGGCCAGGTCCTCTGGCCCCGAGATGGCCCCGAGCGCCT < 41bp 0.815535989908583 0.597310481776587 0.5627743 0.2490448 prediction 0.436451016263992 Functional Loss - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78195406 chr17:78195409 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_83164 0 0 1 0 1 SLC26A11 chr17:78195347 3'AG 78195347 Downstream 63bp
chr20 34095871 34095871 1 + G A SKCM 34095868 + 34095848 34095888 41 CAGGTCTTTCCCACAGGTCTCAGGAGTGGAGGCTGAGCCTA CAGGTCTTTCCCACAGGTCTCAGAAGTGGAGGCTGAGCCTA < 41bp 0.718220634387772 0.476039062523935 0.9189962 0.9025085 prediction 0.436441268775544 Functional Loss - CEP250 ENSG00000126001 CDS Human protein_coding chr20:34095868 chr20:34095871 nonsynonymous SNV 0.667 0 24 hm5C_associated_SNPs_83167 0 0 1 0 1 CEP250 chr20:34095864 3'AG 34095864 Downstream 8bp
chr15 40502390 40502390 1 + T C rs571594522 40502389 + 40502369 40502409 41 CTGGGTGGCGCCAAGAAACTCTGCAGAATTAACAGTAATAA CTGGGTGGCGCCAAGAAACTCCGCAGAATTAACAGTAATAA < 41bp 0.718218677576895 0.453190268647091 0.26233512 0.30147576 prediction 0.436437355153789 Functional Loss - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40502389 chr15:40502390 synonymous SNV . 0 22 hm5C_associated_SNPs_83168 0 0 1 0 2 BUB1B chr15:40502311 3'AG 40502311 Downstream 80bp
chr15 40502390 40502390 1 + T C rs571594522 40502389 + 40502369 40502409 41 CTGGGTGGCGCCAAGAAACTCTGCAGAATTAACAGTAATAA CTGGGTGGCGCCAAGAAACTCCGCAGAATTAACAGTAATAA < 41bp 0.718218677576895 0.453190268647091 0.26233512 0.30147576 prediction 0.436437355153789 Functional Loss - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40502389 chr15:40502390 synonymous SNV . 0 22 hm5C_associated_SNPs_83168 0 0 1 0 2 BUB1B chr15:40502411 5'GT 40502411 Upstream 22bp
chr15 40502393 40502393 1 + A C COAD 40502389 + 40502369 40502409 41 CTGGGTGGCGCCAAGAAACTCTGCAGAATTAACAGTAATAA CTGGGTGGCGCCAAGAAACTCTGCCGAATTAACAGTAATAA < 41bp 0.718218677576895 0.288685324733153 0.26233512 0.18041176 prediction 0.436437355153789 Functional Loss - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40502389 chr15:40502393 synonymous SNV . 0 25 hm5C_associated_SNPs_83169 0 0 1 0 2 BUB1B chr15:40502311 3'AG 40502311 Downstream 83bp
chr15 40502393 40502393 1 + A C COAD 40502389 + 40502369 40502409 41 CTGGGTGGCGCCAAGAAACTCTGCAGAATTAACAGTAATAA CTGGGTGGCGCCAAGAAACTCTGCCGAATTAACAGTAATAA < 41bp 0.718218677576895 0.288685324733153 0.26233512 0.18041176 prediction 0.436437355153789 Functional Loss - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40502389 chr15:40502393 synonymous SNV . 0 25 hm5C_associated_SNPs_83169 0 0 1 0 2 BUB1B chr15:40502411 5'GT 40502411 Upstream 19bp
chr19 44622364 44622364 1 + G A ESCA 44622361 + 44622341 44622381 41 GAGGCAGTGACCTTCAAGGACGTGGCTGTGGTCTTCACTGA GAGGCAGTGACCTTCAAGGACGTAGCTGTGGTCTTCACTGA < 41bp 0.718212878099772 0.474521439196358 0.40216333 0.32986888 prediction 0.436425756199543 Functional Loss - ZNF225 ENSG00000256294 CDS Human protein_coding chr19:44622361 chr19:44622364 synonymous SNV . 0 24 hm5C_associated_SNPs_83172 0 0 0 0 1 ZNF225 chr19:44622341 3'AG 44622341 Downstream 24bp
chr1 75608891 75608891 1 + G C LUSC 75608887 + 75608867 75608907 41 GCCAAGGGGAATGTCTATCACTTGGCATGCTTTGCCTGCTT GCCAAGGGGAATGTCTATCACTTGCCATGCTTTGCCTGCTT < 41bp 0.718200356522726 0.41824843673387 0.22473335 0.18653789 prediction 0.436400713045452 Functional Loss - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75608887 chr1:75608891 nonsynonymous SNV 0.978 5 25 hm5C_associated_SNPs_83176 0 0 1 0 1 LHX8 chr1:75608803 3'AG 75608803 Downstream 89bp
chr12 57860075 57860075 1 + G T HNSC 57860073 + 57860053 57860093 41 CGGAAGGAGTTCGTGTGCCACTGGGGGGGCTGCTCCAGGGA CGGAAGGAGTTCGTGTGCCACTTGGGGGGCTGCTCCAGGGA < 41bp 0.913287106390772 0.695087529012563 0.6769175 0.41169342 prediction 0.436399154756418 Functional Loss - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57860073 chr12:57860075 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_83177 0 0 0 0 2 GLI1 chr12:57860023 3'AG 57860023 Downstream 53bp
chr12 57860075 57860075 1 + G T HNSC 57860073 + 57860053 57860093 41 CGGAAGGAGTTCGTGTGCCACTGGGGGGGCTGCTCCAGGGA CGGAAGGAGTTCGTGTGCCACTTGGGGGGCTGCTCCAGGGA < 41bp 0.913287106390772 0.695087529012563 0.6769175 0.41169342 prediction 0.436399154756418 Functional Loss - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57860073 chr12:57860075 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_83177 0 0 0 0 2 GLI1 chr12:57860172 5'GT 57860172 Upstream 98bp
chr1 68564374 68564374 1 - C A UCEC 68564377 - 68564357 68564397 41 TGTTTGTTTCGGAACTTTATCAAGAATTGTTCAGCGCTTCG TGTTTGTTTCGGAACTTTATCAATAATTGTTCAGCGCTTCG < 41bp 0.718197196608121 0.344545137587594 0.78823334 0.19259456 prediction 0.436394393216242 Functional Loss - WLS ENSG00000116729 CDS Human protein_coding chr1:68564377 chr1:68564374 stopgain 0.525 0 24 hm5C_associated_SNPs_83181 0 0 1 0 1 WLS chr1:68564436 3'AG 68564436 Downstream 63bp
chr17 7942562 7942562 1 + G A rs141930531 7942559 + 7942539 7942579 41 GTCTGTCAGCATCGTGGGGACCCGGGGAGAGAGCCCCCCAC GTCTGTCAGCATCGTGGGGACCCAGGGAGAGAGCCCCCCAC < 41bp 0.718190632360398 0.467839131967679 0.8770764 0.63217753 prediction 0.436381264720796 Functional Loss - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7942559 chr17:7942562 nonsynonymous SNV 0.609 0 24 hm5C_associated_SNPs_83184 0 0 0 0 1 ALOX15B chr17:7942620 5'GT 7942620 Upstream 59bp
chr22 46096204 46096204 1 + G A OV 46096201 + 46096181 46096221 41 GTTTTTAGGCAACATTGCCTCACGGAATGAAGATTCCCAGT GTTTTTAGGCAACATTGCCTCACAGAATGAAGATTCCCAGT < 41bp 0.78818732021353 0.569997447304724 0.18280861 0.034572095 prediction 0.436379745817612 Functional Loss - ATXN10 ENSG00000130638 CDS Human protein_coding chr22:46096201 chr22:46096204 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_83188 0 0 1 0 2 ATXN10 chr22:46096162 3'AG 46096162 Downstream 43bp
chr22 46096204 46096204 1 + G A OV 46096201 + 46096181 46096221 41 GTTTTTAGGCAACATTGCCTCACGGAATGAAGATTCCCAGT GTTTTTAGGCAACATTGCCTCACAGAATGAAGATTCCCAGT < 41bp 0.78818732021353 0.569997447304724 0.18280861 0.034572095 prediction 0.436379745817612 Functional Loss - ATXN10 ENSG00000130638 CDS Human protein_coding chr22:46096201 chr22:46096204 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_83188 0 0 1 0 2 ATXN10 chr22:46096258 5'GT 46096258 Upstream 55bp
chr4 100460363 100460363 1 + G A LUSC 100460360 + 100460340 100460380 41 TTGATTCATTCTGAGCTTGCCGAGATAAACCTGTTAACTCA TTGATTCATTCTGAGCTTGCCGAAATAAACCTGTTAACTCA < 41bp 0.744792548737489 0.526605433862983 0.38094133 0.21059054 prediction 0.436374229749013 Functional Loss - C4orf17 ENSG00000138813 CDS Human protein_coding chr4:100460360 chr4:100460363 synonymous SNV . 0 24 hm5C_associated_SNPs_83190 0 0 0 0 1 C4orf17 chr4:100460320 3'AG 100460320 Downstream 44bp
chr4 166795150 166795150 1 + G A COAD 166795147 + 166795127 166795167 41 AGCTATGGGTCTGCGCTGGCCTCGATTATGATTACACTTTT AGCTATGGGTCTGCGCTGGCCTCAATTATGATTACACTTTT < 41bp 0.757528568095633 0.53934326458115 0.6983646 0.8105041 prediction 0.436370607028966 Functional Loss - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166795147 chr4:166795150 nonsynonymous SNV 0.864 1 24 hm5C_associated_SNPs_83191 0 0 0 0 1 TLL1 chr4:166795225 5'GT 166795225 Upstream 76bp
chr19 45911436 45911436 1 + G A rs150994935 45911433 + 45911413 45911453 41 CTCTCTGGCTCCCAGATCGTCAAGGGCAAATTGGCAGGCAA CTCTCTGGCTCCCAGATCGTCAAAGGCAAATTGGCAGGCAA < 41bp 0.791673709030946 0.573490059412027 0.89780426 0.88682294 prediction 0.436367299237838 Functional Loss - CD3EAP ENSG00000117877 CDS Human protein_coding chr19:45911433 chr19:45911436 synonymous SNV . 0 24 hm5C_associated_SNPs_83192 0 0 1 0 1 CD3EAP chr19:45911391 3'AG 45911391 Downstream 46bp
chr3 128631436 128631436 1 + G T LUAD 128631433 + 128631413 128631453 41 CCTATATCTGTGCCCACCCTCTGGACAGGACATGCTGAGGC CCTATATCTGTGCCCACCCTCTGTACAGGACATGCTGAGGC < 41bp 0.928207298346751 0.710023925874559 0.70188355 0.25441873 prediction 0.436366744944384 Functional Loss - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128631433 chr3:128631436 nonsynonymous SNV 0.934 3 24 hm5C_associated_SNPs_83193 0 0 1 0 1 ACAD9 chr3:128631350 3'AG 128631350 Downstream 87bp
chr16 28906272 28906272 1 + T C HNSC 28906271 + 28906251 28906291 41 GAGAGAGCCAACGCCTGCAACTCGGTGAGCCTGCGGAGCCC GAGAGAGCCAACGCCTGCAACCCGGTGAGCCTGCGGAGCCC < 41bp 0.821848315854414 0.603666044222314 0.5011282 0.7600229 prediction 0.4363645432642 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28906271 chr16:28906272 nonsynonymous SNV 0.989 2 22 hm5C_associated_SNPs_83196 0 0 1 0 1 ATP2A1 chr16:28906274 5'GT 28906274 Upstream 3bp
chr7 150171135 150171135 1 + G A BRCA 150171132 + 150171112 150171152 41 GGCAGCTGCAGTCCACAGGACCCGAGCAGAATCCGGGGACA GGCAGCTGCAGTCCACAGGACCCAAGCAGAATCCGGGGACA < 41bp 0.718181879779807 0.471531609965346 0.288719 0.13520491 prediction 0.436363759559614 Functional Loss - GIMAP8 ENSG00000171115 CDS Human protein_coding chr7:150171132 chr7:150171135 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_83197 0 0 0 0 1 GIMAP8 chr7:150171100 3'AG 150171100 Downstream 36bp
chr20 55967819 55967819 1 + G A LUSC 55967816 + 55967796 55967836 41 GGCATATCTGGGCGCCAAGCCGCGGAGCCTCCAGACGGGTG GGCATATCTGGGCGCCAAGCCGCAGAGCCTCCAGACGGGTG < 41bp 0.718180774217003 0.47053613094747 0.9332639 0.32217973 prediction 0.436361548434005 Functional Loss - RBM38 ENSG00000132819 CDS Human protein_coding chr20:55967816 chr20:55967819 nonsynonymous SNV 0.734 3 24 hm5C_associated_SNPs_83199 0 0 1 0 1 RBM38 chr20:55967833 5'GT 55967833 Upstream 15bp
chr11 8014459 8014459 1 + G T GBM 8014457 + 8014437 8014477 41 CGCTACGGGCCATGACATCACAGAGCACTCTGTGCTGATCC CGCTACGGGCCATGACATCACATAGCACTCTGTGCTGATCC < 41bp 0.718177297650478 0.351147337670471 0.450324 0.16445962 prediction 0.436354595300956 Functional Loss - EIF3F ENSG00000175390 CDS Human protein_coding chr11:8014457 chr11:8014459 stopgain 0.999 1 23 hm5C_associated_SNPs_83201 0 0 1 0 1 EIF3F chr11:8014434 3'AG 8014434 Downstream 26bp
chr19 49517771 49517771 1 + C T COAD 49517769 + 49517749 49517789 41 GCACCAGCTACCAGAGCCCTCACGGCATCCCCATAGACCTG GCACCAGCTACCAGAGCCCTCATGGCATCCCCATAGACCTG < 41bp 0.718174779512308 0.448719989935399 0.745005 0.8682366 prediction 0.436349559024617 Functional Loss - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49517769 chr19:49517771 synonymous SNV . 0 23 hm5C_associated_SNPs_83205 0 0 1 0 2 RUVBL2 chr19:49517741 3'AG 49517741 Downstream 31bp
chr19 49517771 49517771 1 + C T COAD 49517769 + 49517749 49517789 41 GCACCAGCTACCAGAGCCCTCACGGCATCCCCATAGACCTG GCACCAGCTACCAGAGCCCTCATGGCATCCCCATAGACCTG < 41bp 0.718174779512308 0.448719989935399 0.745005 0.8682366 prediction 0.436349559024617 Functional Loss - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49517769 chr19:49517771 synonymous SNV . 0 23 hm5C_associated_SNPs_83205 0 0 1 0 2 RUVBL2 chr19:49517860 5'GT 49517860 Upstream 90bp
chr16 314146 314146 1 + C T ACC 314144 + 314124 314164 41 CCTTCTTCTTCTGGGGCCTCCACGAGCTGGGGAGCACCAGC CCTTCTTCTTCTGGGGCCTCCATGAGCTGGGGAGCACCAGC < 41bp 0.835010936825105 0.616837759380982 0.6671107 0.68016285 prediction 0.436346354888247 Functional Loss - FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:314144 chr16:314146 synonymous SNV . 0 23 hm5C_associated_SNPs_83207 0 0 0 0 1 FAM234A chr16:314170 5'GT 314170 Upstream 25bp
chr7 75614219 75614219 1 + G A rs72557928 75614216 + 75614196 75614236 41 TACGAGCTGGCGCAGTACGCCTCGGAGCCCTCGGAGCAGGA TACGAGCTGGCGCAGTACGCCTCAGAGCCCTCGGAGCAGGA < 41bp 0.788161579584307 0.569998708606102 0.11069864 0.049031943 prediction 0.43632574195641 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75614216 chr7:75614219 synonymous SNV . 0 24 hm5C_associated_SNPs_83210 0 0 1 0 1 POR chr7:75614276 5'GT 75614276 Upstream 58bp
chr3 5243588 5243588 1 + G A UCEC 5243585 + 5243565 5243605 41 CTCCCTGCTTTTGAAAACACCAAGACAGGGATTCCATATCC CTCCCTGCTTTTGAAAACACCAAAACAGGGATTCCATATCC < 41bp 0.718162810806893 0.488583817566342 0.14612004 0.24218607 prediction 0.436325621613787 Functional Loss - EDEM1 ENSG00000134109 CDS Human protein_coding chr3:5243585 chr3:5243588 synonymous SNV . 0 24 hm5C_associated_SNPs_83211 0 0 1 0 1 EDEM1 chr3:5243609 5'GT 5243609 Upstream 22bp
chr5 179991506 179991506 1 + G T LUAD 179991503 + 179991483 179991523 41 TTCCAGGAAATCCCCTTACCCAGGATATATTGAACCTTTAT TTCCAGGAAATCCCCTTACCCAGTATATATTGAACCTTTAT < 41bp 0.718159595087146 0.334530112653181 0.80958045 0.27688336 prediction 0.436319190174292 Functional Loss - CNOT6 ENSG00000113300 CDS Human protein_coding chr5:179991503 chr5:179991506 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_83215 0 0 1 0 3 CNOT6 chr5:179991489 3'AG 179991489 Downstream 18bp
chr5 179991506 179991506 1 + G T LUAD 179991503 + 179991483 179991523 41 TTCCAGGAAATCCCCTTACCCAGGATATATTGAACCTTTAT TTCCAGGAAATCCCCTTACCCAGTATATATTGAACCTTTAT < 41bp 0.718159595087146 0.334530112653181 0.80958045 0.27688336 prediction 0.436319190174292 Functional Loss - CNOT6 ENSG00000113300 CDS Human protein_coding chr5:179991503 chr5:179991506 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_83215 0 0 1 0 3 CNOT6 chr5:179991578 5'GT 179991578 Upstream 73bp
chr5 179991506 179991506 1 + G T LUAD 179991503 + 179991483 179991523 41 TTCCAGGAAATCCCCTTACCCAGGATATATTGAACCTTTAT TTCCAGGAAATCCCCTTACCCAGTATATATTGAACCTTTAT < 41bp 0.718159595087146 0.334530112653181 0.80958045 0.27688336 prediction 0.436319190174292 Functional Loss - CNOT6 ENSG00000113300 CDS Human protein_coding chr5:179991503 chr5:179991506 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_83215 0 0 1 0 3 CNOT6 chr5:179991593 5'GT 179991593 Upstream 88bp
chr5 179991505 179991505 1 + G T LUAD 179991503 + 179991483 179991523 41 TTCCAGGAAATCCCCTTACCCAGGATATATTGAACCTTTAT TTCCAGGAAATCCCCTTACCCATGATATATTGAACCTTTAT < 41bp 0.718159595087146 0.384858746016885 0.80958045 0.30719212 prediction 0.436319190174292 Functional Loss - CNOT6 ENSG00000113300 CDS Human protein_coding chr5:179991503 chr5:179991505 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_83216 0 0 1 0 3 CNOT6 chr5:179991489 3'AG 179991489 Downstream 17bp
chr5 179991505 179991505 1 + G T LUAD 179991503 + 179991483 179991523 41 TTCCAGGAAATCCCCTTACCCAGGATATATTGAACCTTTAT TTCCAGGAAATCCCCTTACCCATGATATATTGAACCTTTAT < 41bp 0.718159595087146 0.384858746016885 0.80958045 0.30719212 prediction 0.436319190174292 Functional Loss - CNOT6 ENSG00000113300 CDS Human protein_coding chr5:179991503 chr5:179991505 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_83216 0 0 1 0 3 CNOT6 chr5:179991578 5'GT 179991578 Upstream 74bp
chr5 179991505 179991505 1 + G T LUAD 179991503 + 179991483 179991523 41 TTCCAGGAAATCCCCTTACCCAGGATATATTGAACCTTTAT TTCCAGGAAATCCCCTTACCCATGATATATTGAACCTTTAT < 41bp 0.718159595087146 0.384858746016885 0.80958045 0.30719212 prediction 0.436319190174292 Functional Loss - CNOT6 ENSG00000113300 CDS Human protein_coding chr5:179991503 chr5:179991505 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_83216 0 0 1 0 3 CNOT6 chr5:179991593 5'GT 179991593 Upstream 89bp
chr9 136405855 136405855 1 + G A SKCM 136405852 + 136405832 136405872 41 CCTGCGAGGGGTTTGCGTGTCTGGAAAATGTGAGGTTGTTA CCTGCGAGGGGTTTGCGTGTCTGAAAAATGTGAGGTTGTTA < 41bp 0.774894938379703 0.556738177409427 0.09744164 0.055760324 prediction 0.436313521940553 Functional Loss - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136405852 chr9:136405855 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_83217 0 0 0 0 1 ADAMTSL2 chr9:136405865 5'GT 136405865 Upstream 11bp
chr10 42982497 42982497 1 + G A rs189029119 42982494 + 42982474 42982514 41 CGTCCAACAAGGGGCTCAAACCCGGGTTGAGGGGTTGCTGG CGTCCAACAAGGGGCTCAAACCCAGGTTGAGGGGTTGCTGG < 41bp 0.776291596788499 0.558135445394242 0.91134274 0.46658534 prediction 0.436312302788515 Functional Loss - LINC00839 ENSG00000185904 ncRNA_exonic Human lincRNA chr10:42982494 chr10:42982497 . . 0 24 hm5C_associated_SNPs_83218 0 0 0 0 2 LINC00839 chr10:42982427 3'AG 42982427 Downstream 71bp
chr10 42982497 42982497 1 + G A rs189029119 42982494 + 42982474 42982514 41 CGTCCAACAAGGGGCTCAAACCCGGGTTGAGGGGTTGCTGG CGTCCAACAAGGGGCTCAAACCCAGGTTGAGGGGTTGCTGG < 41bp 0.776291596788499 0.558135445394242 0.91134274 0.46658534 prediction 0.436312302788515 Functional Loss - LINC00839 ENSG00000185904 ncRNA_exonic Human lincRNA chr10:42982494 chr10:42982497 . . 0 24 hm5C_associated_SNPs_83218 0 0 0 0 2 LINC00839 chr10:42982574 5'GT 42982574 Upstream 78bp
chr4 106474052 106474052 1 + G T SARC 106474050 + 106474030 106474070 41 TGTGGTTGAGAGCAGTGTTTCTGGGGACCACTCTGGCACCT TGTGGTTGAGAGCAGTGTTTCTTGGGACCACTCTGGCACCT < 41bp 0.90079372246991 0.68264103962131 0.8082809 0.032849014 prediction 0.4363053656972 Functional Loss - ARHGEF38 ENSG00000236699 CDS Human protein_coding chr4:106474050 chr4:106474052 nonsynonymous SNV 0.018 2 23 hm5C_associated_SNPs_83219 0 0 0 0 1 ARHGEF38 chr4:106474118 5'GT 106474118 Upstream 67bp
chr4 74279232 74279232 1 + C T UCEC 74279229 + 74279209 74279249 41 CCTCTGTTGGAAAAATCCCACTGCATTGCCGAAGTGGAAAA CCTCTGTTGGAAAAATCCCACTGTATTGCCGAAGTGGAAAA < 41bp 0.756707555122765 0.538557112392503 0.19253507 0.076156944 prediction 0.436300885460525 Functional Loss - ALB ENSG00000163631 CDS Human protein_coding chr4:74279229 chr4:74279232 synonymous SNV . 0 24 hm5C_associated_SNPs_83220 0 0 1 0 1 ALB chr4:74279137 3'AG 74279137 Downstream 96bp
chr5 145719156 145719156 1 + C T ESCA 145719154 + 145719134 145719174 41 CTTTGATGAGAGCCTGCTGGCACGCGCCGAAGCTCTGGCGG CTTTGATGAGAGCCTGCTGGCATGCGCCGAAGCTCTGGCGG < 41bp 0.806454899124457 0.588307309992058 0.17531824 0.09851545 prediction 0.436295178264799 Functional Loss - POU4F3 ENSG00000091010 CDS Human protein_coding chr5:145719154 chr5:145719156 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_83222 0 0 0 0 1 POU4F3 chr5:145719111 3'AG 145719111 Downstream 46bp
chr13 53617312 53617312 1 + G T COAD 53617309 + 53617289 53617329 41 ACAATGTCCTTGCCATTCGCCGAGAAATCGTGGCTCTGAAG ACAATGTCCTTGCCATTCGCCGATAAATCGTGGCTCTGAAG < 41bp 0.718145268673907 0.32730069205601 0.24226636 0.027076691 prediction 0.436290537347814 Functional Loss - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53617309 chr13:53617312 stopgain 0.225 0 24 hm5C_associated_SNPs_83225 0 0 0 0 2 OLFM4 chr13:53617240 3'AG 53617240 Downstream 73bp
chr13 53617312 53617312 1 + G T COAD 53617309 + 53617289 53617329 41 ACAATGTCCTTGCCATTCGCCGAGAAATCGTGGCTCTGAAG ACAATGTCCTTGCCATTCGCCGATAAATCGTGGCTCTGAAG < 41bp 0.718145268673907 0.32730069205601 0.24226636 0.027076691 prediction 0.436290537347814 Functional Loss - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53617309 chr13:53617312 stopgain 0.225 0 24 hm5C_associated_SNPs_83225 0 0 0 0 2 OLFM4 chr13:53617399 5'GT 53617399 Upstream 88bp
chr17 36288236 36288236 1 + G A SKCM 36288233 + 36288213 36288253 41 AGGGAATGCCCATGAACATCCGGGGCCCGATGTGGTCAGTC AGGGAATGCCCATGAACATCCGGAGCCCGATGTGGTCAGTC < 41bp 0.739602045493131 0.521458054934292 0.9175063 0.56327266 prediction 0.436287981117679 Functional Loss - TBC1D3;TBC1D3C;TBC1D3D;TBC1D3E;TBC1D3F;TBC1D3G;TBC1D3H;TBC1D3I;TBC1D3K;TBC1D3L ENSG00000185128 CDS Human other chr17:36288233 chr17:36288236 nonsynonymous SNV 0.015 2 24 hm5C_associated_SNPs_83226 0 0 1 0 2 TBC1D3;TBC1D3C;TBC1D3D;TBC1D3E;TBC1D3F;TBC1D3G;TBC1D3H;TBC1D3I;TBC1D3K;TBC1D3L chr17:36288194 3'AG 36288194 Downstream 43bp
chr17 36288236 36288236 1 + G A SKCM 36288233 + 36288213 36288253 41 AGGGAATGCCCATGAACATCCGGGGCCCGATGTGGTCAGTC AGGGAATGCCCATGAACATCCGGAGCCCGATGTGGTCAGTC < 41bp 0.739602045493131 0.521458054934292 0.9175063 0.56327266 prediction 0.436287981117679 Functional Loss - TBC1D3;TBC1D3C;TBC1D3D;TBC1D3E;TBC1D3F;TBC1D3G;TBC1D3H;TBC1D3I;TBC1D3K;TBC1D3L ENSG00000185128 CDS Human other chr17:36288233 chr17:36288236 nonsynonymous SNV 0.015 2 24 hm5C_associated_SNPs_83226 0 0 1 0 2 TBC1D3;TBC1D3C;TBC1D3D;TBC1D3E;TBC1D3F;TBC1D3G;TBC1D3H;TBC1D3I;TBC1D3K;TBC1D3L chr17:36288301 5'GT 36288301 Upstream 66bp
chr10 71025391 71025391 1 + T C LIHC 71025390 + 71025370 71025410 41 GGATTCTGCAGCAGCTGGGCCTGGACAGCACGTGTGAGGAC GGATTCTGCAGCAGCTGGGCCCGGACAGCACGTGTGAGGAC < 41bp 0.807226634856575 0.589086516753016 0.07024875 0.037402302 prediction 0.436280236207118 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71025390 chr10:71025391 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_83230 0 0 0 1 1 HKDC1 chr10:71025341 3'AG 71025341 Downstream 51bp
chr12 83290361 83290361 1 + G A LIHC 83290358 + 83290338 83290378 41 TATGGACTCAAGACTGCGATCAGGAATGGAGACTGGCAGAA TATGGACTCAAGACTGCGATCAGAAATGGAGACTGGCAGAA < 41bp 0.74277909595561 0.524639532272863 0.60339075 0.21298593 prediction 0.436279127365494 Functional Loss - TMTC2 ENSG00000179104 CDS Human protein_coding chr12:83290358 chr12:83290361 synonymous SNV . 0 24 hm5C_associated_SNPs_83231 0 0 1 0 1 TMTC2 chr12:83290425 5'GT 83290425 Upstream 65bp
chr9 95780445 95780445 1 + G T SARC 95780443 + 95780423 95780463 41 GGATATCGTCAAGCCAAACACAGCACATACATTCATCATAA GGATATCGTCAAGCCAAACACATCACATACATTCATCATAA < 41bp 0.718135090009275 0.377579580721301 0.2588296 0.11888301 prediction 0.43627018001855 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95780443 chr9:95780445 nonsynonymous SNV 0.007 2 23 hm5C_associated_SNPs_83234 0 0 0 0 2 FGD3 chr9:95780418 3'AG 95780418 Downstream 28bp
chr9 95780445 95780445 1 + G T SARC 95780443 + 95780423 95780463 41 GGATATCGTCAAGCCAAACACAGCACATACATTCATCATAA GGATATCGTCAAGCCAAACACATCACATACATTCATCATAA < 41bp 0.718135090009275 0.377579580721301 0.2588296 0.11888301 prediction 0.43627018001855 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95780443 chr9:95780445 nonsynonymous SNV 0.007 2 23 hm5C_associated_SNPs_83234 0 0 0 0 2 FGD3 chr9:95780497 5'GT 95780497 Upstream 53bp
chr1 183212339 183212339 1 + G A COAD 183212336 + 183212316 183212356 41 CTTACTGGAGCAGAAGCTTTCCCGAGCCAAGACCCAGATCA CTTACTGGAGCAGAAGCTTTCCCAAGCCAAGACCCAGATCA < 41bp 0.718131521750627 0.480665288156357 0.40253192 0.13582253 prediction 0.436263043501254 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183212336 chr1:183212339 nonsynonymous SNV 0.940 0 24 hm5C_associated_SNPs_83235 0 0 0 0 1 LAMC2 chr1:183212282 3'AG 183212282 Downstream 58bp
chr16 25123229 25123229 1 + T C LAML 25123228 + 25123208 25123248 41 GCCACTAGGCAGAGGGAATCCTCTATCACCTCCTGCTGTTC GCCACTAGGCAGAGGGAATCCCCTATCACCTCCTGCTGTTC < 41bp 0.789539922983017 0.571409736645241 0.9672996 0.20056012 prediction 0.436260372675552 Functional Loss - LCMT1 ENSG00000205629 CDS Human protein_coding chr16:25123228 chr16:25123229 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_83236 0 0 1 0 1 LCMT1 chr16:25123317 5'GT 25123317 Upstream 89bp
chr5 34850371 34850371 1 + C T rs138413553 34850369 + 34850349 34850389 41 GGACCATCACTGGAAATGTGCACGAGCTCTGGCCAACCTAG GGACCATCACTGGAAATGTGCATGAGCTCTGGCCAACCTAG < 41bp 0.718121264513727 0.453830683307667 0.066906005 0.10314453 prediction 0.436242529027455 Functional Loss - TTC23L ENSG00000205838 CDS Human protein_coding chr5:34850369 chr5:34850371 stopgain 0.815 1 23 hm5C_associated_SNPs_83242 0 0 0 0 2 TTC23L chr5:34850290 3'AG 34850290 Downstream 82bp
chr5 34850371 34850371 1 + C T rs138413553 34850369 + 34850349 34850389 41 GGACCATCACTGGAAATGTGCACGAGCTCTGGCCAACCTAG GGACCATCACTGGAAATGTGCATGAGCTCTGGCCAACCTAG < 41bp 0.718121264513727 0.453830683307667 0.066906005 0.10314453 prediction 0.436242529027455 Functional Loss - TTC23L ENSG00000205838 CDS Human protein_coding chr5:34850369 chr5:34850371 stopgain 0.815 1 23 hm5C_associated_SNPs_83242 0 0 0 0 2 TTC23L chr5:34850413 5'GT 34850413 Upstream 43bp
chr5 34850372 34850372 1 + G A LUSC 34850369 + 34850349 34850389 41 GGACCATCACTGGAAATGTGCACGAGCTCTGGCCAACCTAG GGACCATCACTGGAAATGTGCACAAGCTCTGGCCAACCTAG < 41bp 0.718121264513727 0.486858885296027 0.066906005 0.03541401 prediction 0.436242529027455 Functional Loss - TTC23L ENSG00000205838 CDS Human protein_coding chr5:34850369 chr5:34850372 nonsynonymous SNV 0.605 0 24 hm5C_associated_SNPs_83243 0 0 0 0 2 TTC23L chr5:34850290 3'AG 34850290 Downstream 83bp
chr5 34850372 34850372 1 + G A LUSC 34850369 + 34850349 34850389 41 GGACCATCACTGGAAATGTGCACGAGCTCTGGCCAACCTAG GGACCATCACTGGAAATGTGCACAAGCTCTGGCCAACCTAG < 41bp 0.718121264513727 0.486858885296027 0.066906005 0.03541401 prediction 0.436242529027455 Functional Loss - TTC23L ENSG00000205838 CDS Human protein_coding chr5:34850369 chr5:34850372 nonsynonymous SNV 0.605 0 24 hm5C_associated_SNPs_83243 0 0 0 0 2 TTC23L chr5:34850413 5'GT 34850413 Upstream 42bp
chr2 74742841 74742841 1 + G A UCEC 74742838 + 74742818 74742858 41 CCCTCCGAAGCGGAAGAAGCCGCGCACGTCCTTCTCCCGCT CCCTCCGAAGCGGAAGAAGCCGCACACGTCCTTCTCCCGCT < 41bp 0.718117720427059 0.471876680140843 0.5117493 0.038309515 prediction 0.436235440854118 Functional Loss - TLX2 ENSG00000115297 CDS Human protein_coding chr2:74742838 chr2:74742841 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_83246 0 0 0 0 1 TLX2 chr2:74742760 3'AG 74742760 Downstream 82bp
chr10 102893991 102893991 1 + C T COAD 102893989 + 102893969 102894009 41 GAAGCCGCGCACGTCCTTCACACGCCTGCAGATCTGCGAGC GAAGCCGCGCACGTCCTTCACATGCCTGCAGATCTGCGAGC < 41bp 0.718113689000271 0.449318833836842 0.18391114 0.30417484 prediction 0.436227378000541 Functional Loss - TLX1 ENSG00000107807 CDS Human protein_coding chr10:102893989 chr10:102893991 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_83251 0 0 0 0 1 TLX1 chr10:102893932 3'AG 102893932 Downstream 60bp
chr10 102893992 102893992 1 + G T LUSC 102893989 + 102893969 102894009 41 GAAGCCGCGCACGTCCTTCACACGCCTGCAGATCTGCGAGC GAAGCCGCGCACGTCCTTCACACTCCTGCAGATCTGCGAGC < 41bp 0.718113689000271 0.309801563923215 0.18391114 0.20111251 prediction 0.436227378000541 Functional Loss - TLX1 ENSG00000107807 CDS Human protein_coding chr10:102893989 chr10:102893992 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_83252 0 0 0 0 1 TLX1 chr10:102893932 3'AG 102893932 Downstream 61bp
chr1 197889237 197889237 1 + G T SARC 197889234 + 197889214 197889254 41 TGAAGTGCTGTGAATGTAAGCTGGCCCTCGAGTCCGAGCTC TGAAGTGCTGTGAATGTAAGCTGTCCCTCGAGTCCGAGCTC < 41bp 0.71810695331066 0.317304882356396 0.39978832 0.18086368 prediction 0.43621390662132 Functional Loss - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197889234 chr1:197889237 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_83259 0 0 0 0 1 LHX9 chr1:197889304 5'GT 197889304 Upstream 68bp
chr16 76587263 76587263 1 + G A UCEC 76587260 + 76587240 76587280 41 TCTCTGCAGTGCAGCTCAGCCACGTGGCCCCTCTGAAGGCA TCTCTGCAGTGCAGCTCAGCCACATGGCCCCTCTGAAGGCA < 41bp 0.774537873020067 0.556431563014137 0.25661233 0.6122407 prediction 0.436212620011859 Functional Loss - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76587260 chr16:76587263 nonsynonymous SNV 0.687 2 24 hm5C_associated_SNPs_83260 0 0 0 0 1 CNTNAP4 chr16:76587180 3'AG 76587180 Downstream 84bp
chr11 64367874 64367874 1 + G A SKCM 64367871 + 64367851 64367891 41 TGCGCTCAGCCTTGGCCGTGCTGGGGCTGGGCGGGGTGGGG TGCGCTCAGCCTTGGCCGTGCTGAGGCTGGGCGGGGTGGGG < 41bp 0.71809475771949 0.462616208021829 0.5746834 0.5119109 prediction 0.436189515438979 Functional Loss - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64367871 chr11:64367874 nonsynonymous SNV 0.811 4 24 hm5C_associated_SNPs_83266 0 0 0 0 2 SLC22A12 chr11:64367839 3'AG 64367839 Downstream 36bp
chr11 64367874 64367874 1 + G A SKCM 64367871 + 64367851 64367891 41 TGCGCTCAGCCTTGGCCGTGCTGGGGCTGGGCGGGGTGGGG TGCGCTCAGCCTTGGCCGTGCTGAGGCTGGGCGGGGTGGGG < 41bp 0.71809475771949 0.462616208021829 0.5746834 0.5119109 prediction 0.436189515438979 Functional Loss - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64367871 chr11:64367874 nonsynonymous SNV 0.811 4 24 hm5C_associated_SNPs_83266 0 0 0 0 2 SLC22A12 chr11:64367947 5'GT 64367947 Upstream 74bp
chr3 161216977 161216977 1 + G A SKCM 161216974 + 161216954 161216994 41 TCTAGGTCCTAAAGGAGAGGCTGGAAATTTGGGGATCCCAG TCTAGGTCCTAAAGGAGAGGCTGAAAATTTGGGGATCCCAG < 41bp 0.774202430590089 0.556110883755691 0.4492679 0.1873939 prediction 0.436183093668797 Functional Loss - OTOL1 ENSG00000182447 CDS Human protein_coding chr3:161216974 chr3:161216977 nonsynonymous SNV 0.640 5 24 hm5C_associated_SNPs_83267 0 0 0 0 2 OTOL1 chr3:161216959 3'AG 161216959 Downstream 19bp
chr3 161216977 161216977 1 + G A SKCM 161216974 + 161216954 161216994 41 TCTAGGTCCTAAAGGAGAGGCTGGAAATTTGGGGATCCCAG TCTAGGTCCTAAAGGAGAGGCTGAAAATTTGGGGATCCCAG < 41bp 0.774202430590089 0.556110883755691 0.4492679 0.1873939 prediction 0.436183093668797 Functional Loss - OTOL1 ENSG00000182447 CDS Human protein_coding chr3:161216974 chr3:161216977 nonsynonymous SNV 0.640 5 24 hm5C_associated_SNPs_83267 0 0 0 0 2 OTOL1 chr3:161217048 5'GT 161217048 Upstream 72bp
chr3 5214397 5214397 1 + T C COAD 5214396 + 5214376 5214416 41 GAAATGAGCTACATAATCTTCTAGATAAACCACAGTTACAA GAAATGAGCTACATAATCTTCCAGATAAACCACAGTTACAA < 41bp 0.811513618189083 0.593425032301374 0.18436205 0.13783267 prediction 0.436177171775417 Functional Loss - ARL8B ENSG00000134108 CDS Human protein_coding chr3:5214396 chr3:5214397 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_83269 0 0 1 0 2 ARL8B chr3:5214332 3'AG 5214332 Downstream 66bp
chr3 5214397 5214397 1 + T C COAD 5214396 + 5214376 5214416 41 GAAATGAGCTACATAATCTTCTAGATAAACCACAGTTACAA GAAATGAGCTACATAATCTTCCAGATAAACCACAGTTACAA < 41bp 0.811513618189083 0.593425032301374 0.18436205 0.13783267 prediction 0.436177171775417 Functional Loss - ARL8B ENSG00000134108 CDS Human protein_coding chr3:5214396 chr3:5214397 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_83269 0 0 1 0 2 ARL8B chr3:5214425 5'GT 5214425 Upstream 29bp
chr6 43269393 43269393 1 + C T GBM 43269391 + 43269371 43269411 41 CCTAGACCTGTTCCGCACACCACGGCTCCGACACATCTCAC CCTAGACCTGTTCCGCACACCATGGCTCCGACACATCTCAC < 41bp 0.830894239407326 0.612806569399741 0.028642654 0.053191274 prediction 0.436175340015169 Functional Loss - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43269391 chr6:43269393 nonsynonymous SNV 0.026 2 23 hm5C_associated_SNPs_83270 0 0 0 0 2 SLC22A7 chr6:43269321 3'AG 43269321 Downstream 73bp
chr6 43269393 43269393 1 + C T GBM 43269391 + 43269371 43269411 41 CCTAGACCTGTTCCGCACACCACGGCTCCGACACATCTCAC CCTAGACCTGTTCCGCACACCATGGCTCCGACACATCTCAC < 41bp 0.830894239407326 0.612806569399741 0.028642654 0.053191274 prediction 0.436175340015169 Functional Loss - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43269391 chr6:43269393 nonsynonymous SNV 0.026 2 23 hm5C_associated_SNPs_83270 0 0 0 0 2 SLC22A7 chr6:43269430 5'GT 43269430 Upstream 38bp
chr3 100148683 100148683 1 + A C rs201658663 100148682 + 100148662 100148702 41 AGAGAGGACTCCGGGAACGCCACCGACTGCAAGCCACCAGT AGAGAGGACTCCGGGAACGCCCCCGACTGCAAGCCACCAGT < 41bp 0.823709623257287 0.605623157546979 0.42315623 0.2719835 prediction 0.436172931420618 Functional Loss - LNP1 ENSG00000206535 CDS Human protein_coding chr3:100148682 chr3:100148683 nonsynonymous SNV 0.171 1 22 hm5C_associated_SNPs_83271 0 0 0 0 1 LNP1 chr3:100148729 5'GT 100148729 Upstream 47bp
chr7 128454716 128454716 1 + C T UCEC 128454713 + 128454693 128454733 41 TCAAAGAACTGCAGACCAAGCTGCGGGAGCTGCAGCTGCAA TCAAAGAACTGCAGACCAAGCTGTGGGAGCTGCAGCTGCAA < 41bp 0.722460735393768 0.50437443010903 0.3675233 0.23156798 prediction 0.436172610569475 Functional Loss - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128454713 chr7:128454716 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_83272 0 0 0 0 1 CCDC136 chr7:128454692 3'AG 128454692 Downstream 25bp
chr8 11295695 11295695 1 + G A rs2272595 11295692 + 11295672 11295712 41 TTCCGCCTGCCTCTCTCAGCCCCGGAATCGCCATGAGCTGC TTCCGCCTGCCTCTCTCAGCCCCAGAATCGCCATGAGCTGC < 41bp 0.718085930956177 0.46942022181937 0.026026368 0.018135935 prediction 0.436171861912353 Functional Loss - FAM167A-AS1 ENSG00000184608 CDS Human antisense chr8:11295692 chr8:11295695 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_83273 0 0 0 0 1 FAM167A-AS1 chr8:11295719 5'GT 11295719 Upstream 25bp
chr2 70121125 70121125 1 + C T THCA 70121123 + 70121103 70121143 41 AAGCGGGACTCCAAATGGGTCGCAGTCGCAGCCGCTCTCCA AAGCGGGACTCCAAATGGGTCGTAGTCGCAGCCGCTCTCCA < 41bp 0.718083591416638 0.484190261554581 0.19771013 0.3024422 prediction 0.436167182833277 Functional Loss - SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70121123 chr2:70121125 synonymous SNV . 0 23 hm5C_associated_SNPs_83276 0 0 1 2 1 SNRNP27 chr2:70121150 5'GT 70121150 Upstream 26bp
chrX 65478771 65478771 1 + G T UCEC 65478768 + 65478748 65478788 41 GGTACATGCTGGCCATGGGCCAAGATGTGGATCTACACACC GGTACATGCTGGCCATGGGCCAATATGTGGATCTACACACC < 41bp 0.718082464545423 0.321508633376985 0.10281849 0.052159667 prediction 0.436164929090846 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65478768 chrX:65478771 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_83278 0 0 0 0 2 HEPH chrX:65478682 3'AG 65478682 Downstream 90bp
chrX 65478771 65478771 1 + G T UCEC 65478768 + 65478748 65478788 41 GGTACATGCTGGCCATGGGCCAAGATGTGGATCTACACACC GGTACATGCTGGCCATGGGCCAATATGTGGATCTACACACC < 41bp 0.718082464545423 0.321508633376985 0.10281849 0.052159667 prediction 0.436164929090846 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65478768 chrX:65478771 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_83278 0 0 0 0 2 HEPH chrX:65478821 5'GT 65478821 Upstream 51bp
chr17 76167658 76167658 1 + G A rs148851394 76167655 + 76167635 76167675 41 AACCAGTGGGCAGTCACCAACCCGAAGGACGTGCTGGTGGG AACCAGTGGGCAGTCACCAACCCAAAGGACGTGCTGGTGGG < 41bp 0.805697473091249 0.587621394644727 0.30566496 0.1778081 prediction 0.436152156893045 Functional Loss - SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167655 chr17:76167658 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_83281 0 0 1 0 2 SYNGR2 chr17:76167591 3'AG 76167591 Downstream 68bp
chr17 76167658 76167658 1 + G A rs148851394 76167655 + 76167635 76167675 41 AACCAGTGGGCAGTCACCAACCCGAAGGACGTGCTGGTGGG AACCAGTGGGCAGTCACCAACCCAAAGGACGTGCTGGTGGG < 41bp 0.805697473091249 0.587621394644727 0.30566496 0.1778081 prediction 0.436152156893045 Functional Loss - SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167655 chr17:76167658 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_83281 0 0 1 0 2 SYNGR2 chr17:76167730 5'GT 76167730 Upstream 73bp
chr21 15599222 15599222 1 + G A SKCM 15599219 + 15599199 15599239 41 AGCAGTGGCATGTGTATAATCCAGTGCTGCAGCTTCCTTAC AGCAGTGGCATGTGTATAATCCAATGCTGCAGCTTCCTTAC < 41bp 0.718068817971054 0.478634343398421 0.4380274 0.19297627 prediction 0.436137635942109 Functional Loss - RBM11 ENSG00000185272 CDS Human protein_coding chr21:15599219 chr21:15599222 nonsynonymous SNV 0.744 0 24 hm5C_associated_SNPs_83284 0 0 1 0 1 RBM11 chr21:15599201 3'AG 15599201 Downstream 22bp
chr8 75898249 75898249 1 + C T BRCA 75898247 + 75898227 75898267 41 AGTGTACCGCGCGGGAGTGGCTCAGAGTAACCACAGTGCTG AGTGTACCGCGCGGGAGTGGCTTAGAGTAACCACAGTGCTG < 41bp 0.718060763396735 0.438890253820015 0.13859141 0.07387248 prediction 0.436121526793469 Functional Loss - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75898247 chr8:75898249 synonymous SNV . 0 23 hm5C_associated_SNPs_83289 0 0 0 0 1 CRISPLD1 chr8:75898161 3'AG 75898161 Downstream 89bp
chr11 61213502 61213502 1 + C T COAD 61213499 + 61213479 61213519 41 ACAAAAACAAAGAGCAGAGACTGCGTGCCCCAGATCTTGAG ACAAAAACAAAGAGCAGAGACTGTGTGCCCCAGATCTTGAG < 41bp 0.722235455969578 0.504174913154125 0.13343528 0.07255775 prediction 0.436121085630905 Functional Loss - SDHAF2 ENSG00000167985;ENSG00000256591 CDS Human other chr11:61213499 chr11:61213502 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_83290 1 0 1 0 1 SDHAF2 chr11:61213413 3'AG 61213413 Downstream 90bp
chr7 73609547 73609547 1 + C T CESC 73609545 + 73609525 73609565 41 CAGCTTAAACCTCGAACAGTCGCGACGCCCCTCAATCAAGT CAGCTTAAACCTCGAACAGTCGTGACGCCCCTCAATCAAGT < 41bp 0.850732576803896 0.63267631184601 0.0063276887 0.0065875947 prediction 0.436112529915774 Functional Loss - EIF4H ENSG00000106682 CDS Human protein_coding chr7:73609545 chr7:73609547 nonsynonymous SNV 0.874 0 23 hm5C_associated_SNPs_83292 0 0 1 0 1 EIF4H chr7:73609499 3'AG 73609499 Downstream 49bp
chr6 133767784 133767784 1 + G A BLCA 133767781 + 133767761 133767801 41 CTACCAGGTCTATGGAAATGCAGGACCTAGCAAGTCCTCAT CTACCAGGTCTATGGAAATGCAGAACCTAGCAAGTCCTCAT < 41bp 0.745380279777291 0.527324225868018 0.1584973 0.08439374 prediction 0.436112107818545 Functional Loss - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133767781 chr6:133767784 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_83293 0 0 0 0 1 EYA4 chr6:133767768 3'AG 133767768 Downstream 17bp
chr19 36603844 36603844 1 + G T SARC 36603841 + 36603821 36603861 41 TTTCATGACGCCTTCGATCTCAAGCGCCACATGAGGACTCA TTTCATGACGCCTTCGATCTCAATCGCCACATGAGGACTCA < 41bp 0.71805578400392 0.318041404600202 0.4364207 0.039998442 prediction 0.436111568007839 Functional Loss - OVOL3 ENSG00000105261 CDS Human protein_coding chr19:36603841 chr19:36603844 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_83294 0 0 1 0 1 OVOL3 chr19:36603866 5'GT 36603866 Upstream 23bp
chr15 49611912 49611912 1 + T C UCEC 49611911 + 49611891 49611931 41 CTGAAAACATGGTCCAGCTGCTGGGAGAGTTGATGAACCAG CTGAAAACATGGTCCAGCTGCCGGGAGAGTTGATGAACCAG < 41bp 0.718052471183925 0.47460278178626 0.36728013 0.55706465 prediction 0.436104942367851 Functional Loss - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49611911 chr15:49611912 nonsynonymous SNV 0.992 5 22 hm5C_associated_SNPs_83297 0 0 1 0 1 GALK2 chr15:49612002 5'GT 49612002 Upstream 91bp
chr17 47230229 47230229 1 + G A LUSC 47230226 + 47230206 47230246 41 TCCCCTTTGGGTACCCAGTCCACGGAGTGGAGGTGATGCCC TCCCCTTTGGGTACCCAGTCCACAGAGTGGAGGTGATGCCC < 41bp 0.821968135915722 0.60391596212152 0.38939232 0.21230847 prediction 0.436104347588404 Functional Loss - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47230226 chr17:47230229 nonsynonymous SNV 0.970 4 24 hm5C_associated_SNPs_83298 0 0 0 0 2 B4GALNT2 chr17:47230162 3'AG 47230162 Downstream 68bp
chr17 47230229 47230229 1 + G A LUSC 47230226 + 47230206 47230246 41 TCCCCTTTGGGTACCCAGTCCACGGAGTGGAGGTGATGCCC TCCCCTTTGGGTACCCAGTCCACAGAGTGGAGGTGATGCCC < 41bp 0.821968135915722 0.60391596212152 0.38939232 0.21230847 prediction 0.436104347588404 Functional Loss - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47230226 chr17:47230229 nonsynonymous SNV 0.970 4 24 hm5C_associated_SNPs_83298 0 0 0 0 2 B4GALNT2 chr17:47230268 5'GT 47230268 Upstream 40bp
chr10 124908107 124908107 1 + C T STAD 124908105 + 124908085 124908125 41 CCTGCTTCTGCCCAGACCAGCACGGCCCTAAGGAGCAGGGC CCTGCTTCTGCCCAGACCAGCATGGCCCTAAGGAGCAGGGC < 41bp 0.747829528215255 0.529777445251124 0.36134392 0.3899411 prediction 0.436104165928261 Functional Loss - HMX2 ENSG00000188816 CDS Human protein_coding chr10:124908105 chr10:124908107 synonymous SNV . 0 23 hm5C_associated_SNPs_83299 0 0 0 0 1 HMX2 chr10:124908162 5'GT 124908162 Upstream 56bp
chr7 40899972 40899972 1 + T C UCS 40899971 + 40899951 40899991 41 AGGCCAGGCCGCCCCCGCTGCTCGGGCAGCACACAACGCAC AGGCCAGGCCGCCCCCGCTGCCCGGGCAGCACACAACGCAC < 41bp 0.718050755400142 0.495636045525026 0.3078686 0.4413796 prediction 0.436101510800284 Functional Loss - SUGCT ENSG00000175600 CDS Human protein_coding chr7:40899971 chr7:40899972 nonsynonymous SNV 0.980 4 22 hm5C_associated_SNPs_83302 0 0 0 0 1 SUGCT chr7:40899915 3'AG 40899915 Downstream 58bp
chr11 66258799 66258799 1 + G A UCEC 66258796 + 66258776 66258816 41 GGGAAGCCCTTTCCAGGTGACCCGGGGGGACTACGCGCCCA GGGAAGCCCTTTCCAGGTGACCCAGGGGGACTACGCGCCCA < 41bp 0.718046251029841 0.476638760857078 0.93059486 0.87483627 prediction 0.436092502059682 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66258796 chr11:66258799 nonsynonymous SNV 0.846 3 24 hm5C_associated_SNPs_83303 0 0 0 0 2 DPP3 chr11:66258724 3'AG 66258724 Downstream 76bp
chr11 66258799 66258799 1 + G A UCEC 66258796 + 66258776 66258816 41 GGGAAGCCCTTTCCAGGTGACCCGGGGGGACTACGCGCCCA GGGAAGCCCTTTCCAGGTGACCCAGGGGGACTACGCGCCCA < 41bp 0.718046251029841 0.476638760857078 0.93059486 0.87483627 prediction 0.436092502059682 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66258796 chr11:66258799 nonsynonymous SNV 0.846 3 24 hm5C_associated_SNPs_83303 0 0 0 0 2 DPP3 chr11:66258854 5'GT 66258854 Upstream 56bp
chr13 47275329 47275329 1 + C T OV 47275326 + 47275306 47275346 41 TGAGAGAAGCAGTAGATTTGCTGCAAGATCCCAATGGGTGT TGAGAGAAGCAGTAGATTTGCTGTAAGATCCCAATGGGTGT < 41bp 0.718046069107716 0.497760817730958 0.29464668 0.29333925 prediction 0.436092138215432 Functional Loss - LRCH1 ENSG00000136141 CDS Human protein_coding chr13:47275326 chr13:47275329 stopgain 0.927 1 24 hm5C_associated_SNPs_83304 0 0 1 0 2 LRCH1 chr13:47275256 3'AG 47275256 Downstream 74bp
chr13 47275329 47275329 1 + C T OV 47275326 + 47275306 47275346 41 TGAGAGAAGCAGTAGATTTGCTGCAAGATCCCAATGGGTGT TGAGAGAAGCAGTAGATTTGCTGTAAGATCCCAATGGGTGT < 41bp 0.718046069107716 0.497760817730958 0.29464668 0.29333925 prediction 0.436092138215432 Functional Loss - LRCH1 ENSG00000136141 CDS Human protein_coding chr13:47275326 chr13:47275329 stopgain 0.927 1 24 hm5C_associated_SNPs_83304 0 0 1 0 2 LRCH1 chr13:47275342 5'GT 47275342 Upstream 14bp
chr11 118405260 118405260 1 + G A UCEC 118405257 + 118405237 118405277 41 CAGTGCTGGGCTATATCTATCGAGTGTCCAGCGTGAGCAGT CAGTGCTGGGCTATATCTATCGAATGTCCAGCGTGAGCAGT < 41bp 0.718041538008368 0.483258700317266 0.88651055 0.38863632 prediction 0.436083076016735 Functional Loss - TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118405257 chr11:118405260 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_83305 0 0 1 0 1 TMEM25 chr11:118405222 3'AG 118405222 Downstream 39bp
chr5 148702181 148702181 1 + G A rs368895712 148702178 + 148702158 148702198 41 TCTCCCACCAGGACGAGGAGCCCGAGCGCCCCACAGGGGCC TCTCCCACCAGGACGAGGAGCCCAAGCGCCCCACAGGGGCC < 41bp 0.718039623954381 0.468340406087268 0.3878286 0.20566049 prediction 0.436079247908763 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148702178 chr5:148702181 nonsynonymous SNV 0.017 1 24 hm5C_associated_SNPs_83306 0 0 0 0 2 AFAP1L1 chr5:148702169 3'AG 148702169 Downstream 13bp
chr5 148702181 148702181 1 + G A rs368895712 148702178 + 148702158 148702198 41 TCTCCCACCAGGACGAGGAGCCCGAGCGCCCCACAGGGGCC TCTCCCACCAGGACGAGGAGCCCAAGCGCCCCACAGGGGCC < 41bp 0.718039623954381 0.468340406087268 0.3878286 0.20566049 prediction 0.436079247908763 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148702178 chr5:148702181 nonsynonymous SNV 0.017 1 24 hm5C_associated_SNPs_83306 0 0 0 0 2 AFAP1L1 chr5:148702280 5'GT 148702280 Upstream 100bp
chr5 148702180 148702180 1 + C T UCEC 148702178 + 148702158 148702198 41 TCTCCCACCAGGACGAGGAGCCCGAGCGCCCCACAGGGGCC TCTCCCACCAGGACGAGGAGCCTGAGCGCCCCACAGGGGCC < 41bp 0.718039623954381 0.434329581699754 0.3878286 0.3789668 prediction 0.436079247908763 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148702178 chr5:148702180 synonymous SNV . 0 23 hm5C_associated_SNPs_83307 0 0 0 0 1 AFAP1L1 chr5:148702169 3'AG 148702169 Downstream 12bp
chr18 76756928 76756928 1 + C T COAD 76756926 + 76756906 76756946 41 CACATGTGGAATAACGCCCCCGCGAGACGCGGCCGCCGCCT CACATGTGGAATAACGCCCCCGTGAGACGCGGCCGCCGCCT < 41bp 0.829517254974091 0.611483263412735 0.75802636 0.4351883 prediction 0.436067983122713 Functional Loss - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76756926 chr18:76756928 nonsynonymous SNV 0.914 4 23 hm5C_associated_SNPs_83310 0 0 0 0 1 SALL3 chr18:76756891 3'AG 76756891 Downstream 38bp
chr4 72897871 72897871 1 + G A HNSC 72897868 + 72897848 72897888 41 ACAGAACCTGTTGCTGCAGACGGGCTTGGTGGATTCTGGTT ACAGAACCTGTTGCTGCAGACGGACTTGGTGGATTCTGGTT < 41bp 0.800001970160457 0.581968326226394 0.46093518 0.18388703 prediction 0.436067287868127 Functional Loss - NPFFR2 ENSG00000056291 CDS Human protein_coding chr4:72897868 chr4:72897871 nonsynonymous SNV 0.006 1 24 hm5C_associated_SNPs_83311 0 0 0 0 1 NPFFR2 chr4:72897917 5'GT 72897917 Upstream 47bp
chrX 129139248 129139248 1 + G T LUSC 129139246 + 129139226 129139266 41 CTCTACAGCGGCGTGCACAACTGGACCAGTTCTGACCGGAT CTCTACAGCGGCGTGCACAACTTGACCAGTTCTGACCGGAT < 41bp 0.718031006624159 0.36916399819632 0.35060105 0.051614046 prediction 0.436062013248318 Functional Loss - BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129139246 chrX:129139248 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_83313 0 0 1 0 1 BCORL1 chrX:129139293 5'GT 129139293 Upstream 46bp
chr5 76115069 76115069 1 + C T rs2243072 76115067 + 76115047 76115087 41 ATCCTGCTAGCAGCCTCTCTCTCCTGCAGTGGCACCATCCA ATCCTGCTAGCAGCCTCTCTCTTCTGCAGTGGCACCATCCA < 41bp 0.718025950753112 0.472365077888837 0.59064853 0.2621107 prediction 0.436051901506223 Functional Loss - F2RL1 ENSG00000164251 CDS Human protein_coding chr5:76115067 chr5:76115069 nonsynonymous SNV 0.013 1 23 hm5C_associated_SNPs_83317 0 0 1 0 1 F2RL1 chr5:76115089 5'GT 76115089 Upstream 21bp
chr16 8862780 8862780 1 + G A BLCA 8862777 + 8862757 8862797 41 TCCCACGGCTGAAATACCCTCTGGAAGAGTTTGTGAAAGAG TCCCACGGCTGAAATACCCTCTGAAAGAGTTTGTGAAAGAG < 41bp 0.791782947635983 0.573758990878765 0.36724275 0.10175258 prediction 0.436047913514436 Functional Loss - ABAT ENSG00000183044 CDS Human protein_coding chr16:8862777 chr16:8862780 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_83320 0 0 0 0 2 ABAT chr16:8862682 3'AG 8862682 Downstream 99bp
chr16 8862780 8862780 1 + G A BLCA 8862777 + 8862757 8862797 41 TCCCACGGCTGAAATACCCTCTGGAAGAGTTTGTGAAAGAG TCCCACGGCTGAAATACCCTCTGAAAGAGTTTGTGAAAGAG < 41bp 0.791782947635983 0.573758990878765 0.36724275 0.10175258 prediction 0.436047913514436 Functional Loss - ABAT ENSG00000183044 CDS Human protein_coding chr16:8862777 chr16:8862780 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_83320 0 0 0 0 2 ABAT chr16:8862830 5'GT 8862830 Upstream 51bp
chrX 26158093 26158093 1 + C T BLCA 26158091 + 26158071 26158111 41 TACTGCTGCCATGGCAAATGCACGTTCCAGAACCACGTCTA TACTGCTGCCATGGCAAATGCATGTTCCAGAACCACGTCTA < 41bp 0.809632576573357 0.591615698628133 0.32898703 0.24766085 prediction 0.436033755890447 Functional Loss - MAGEB18 ENSG00000176774 CDS Human protein_coding chrX:26158091 chrX:26158093 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_83323 0 0 0 0 1 MAGEB18 chrX:26158170 5'GT 26158170 Upstream 78bp
chr2 169626081 169626081 1 + C T UCEC 169626078 + 169626058 169626098 41 AGATGAGGAGGACTCAGAACCTCCGGGAAAGAATCCCCACA AGATGAGGAGGACTCAGAACCTCTGGGAAAGAATCCCCACA < 41bp 0.721993765101616 0.503976926977277 0.3730871 0.1945132 prediction 0.436033676248678 Functional Loss - CERS6 ENSG00000172292 CDS Human protein_coding chr2:169626078 chr2:169626081 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_83324 0 0 1 0 1 CERS6 chr2:169626020 3'AG 169626020 Downstream 62bp
chr17 1198846 1198846 1 + G A ESCA 1198843 + 1198823 1198863 41 CCGGAGGCTGGGCCGCCTGGCTCGGCTGCTCAGCATTACCC CCGGAGGCTGGGCCGCCTGGCTCAGCTGCTCAGCATTACCC < 41bp 0.802888692064972 0.584874442375542 0.012072712 0.008187801 prediction 0.436028499378861 Functional Loss - TUSC5 ENSG00000184811 CDS Human protein_coding chr17:1198843 chr17:1198846 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_83327 0 0 0 0 2 TUSC5 chr17:1198785 3'AG 1198785 Downstream 62bp
chr17 1198846 1198846 1 + G A ESCA 1198843 + 1198823 1198863 41 CCGGAGGCTGGGCCGCCTGGCTCGGCTGCTCAGCATTACCC CCGGAGGCTGGGCCGCCTGGCTCAGCTGCTCAGCATTACCC < 41bp 0.802888692064972 0.584874442375542 0.012072712 0.008187801 prediction 0.436028499378861 Functional Loss - TUSC5 ENSG00000184811 CDS Human protein_coding chr17:1198843 chr17:1198846 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_83327 0 0 0 0 2 TUSC5 chr17:1198917 5'GT 1198917 Upstream 72bp
chr8 102571013 102571013 1 + C T rs34332949 102571010 + 102570990 102571030 41 AGCACTCCGGACAGCACATACAGCGAGAGCTTCAAGGACGC AGCACTCCGGACAGCACATACAGTGAGAGCTTCAAGGACGC < 41bp 0.727866704460315 0.509857130962001 0.40955034 0.28630924 prediction 0.436019146996628 Functional Loss - GRHL2 ENSG00000083307 CDS Human protein_coding chr8:102571010 chr8:102571013 synonymous SNV . 0 24 hm5C_associated_SNPs_83328 1 0 0 0 1 GRHL2 chr8:102571040 5'GT 102571040 Upstream 28bp
chr8 133849986 133849986 1 + C T BRCA 133849983 + 133849963 133850003 41 GAGTGCTTGTGTTGGCAACACAGCGTGTGCATGGGGCTGCT GAGTGCTTGTGTTGGCAACACAGTGTGTGCATGGGGCTGCT < 41bp 0.728938401550882 0.51092939896576 0.12160441 0.11244327 prediction 0.436018005170244 Functional Loss - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133849983 chr8:133849986 synonymous SNV . 0 24 hm5C_associated_SNPs_83329 0 0 1 0 1 PHF20L1 chr8:133850056 5'GT 133850056 Upstream 71bp
chr11 68696768 68696768 1 + G T HNSC 68696766 + 68696746 68696786 41 TGGATCCCCCTGCTGAAGGCCAGAAAGTGCATCCTGGCGGG TGGATCCCCCTGCTGAAGGCCATAAAGTGCATCCTGGCGGG < 41bp 0.718007910537885 0.355813749709808 0.10280764 0.069312006 prediction 0.43601582107577 Functional Loss - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68696766 chr11:68696768 nonsynonymous SNV 0.731 2 23 hm5C_associated_SNPs_83330 0 0 1 0 1 IGHMBP2 chr11:68696825 5'GT 68696825 Upstream 58bp
chr8 11414294 11414294 1 + C T LGG 11414291 + 11414271 11414311 41 CACGAGCGGCTGGTCCGACTCTACGCAGTGGTCACCAAGGA CACGAGCGGCTGGTCCGACTCTATGCAGTGGTCACCAAGGA < 41bp 0.718006693447699 0.498635852799594 0.197454 0.25049087 prediction 0.436013386895399 Functional Loss - BLK ENSG00000136573 CDS Human protein_coding chr8:11414291 chr8:11414294 synonymous SNV . 0 24 hm5C_associated_SNPs_83331 0 0 0 0 1 BLK chr8:11414346 5'GT 11414346 Upstream 53bp
chr1 16096939 16096939 1 + C T LUAD 16096937 + 16096917 16096957 41 CTGCCACAAGACCGTGTCCCCCCGAGAGCTGGCTGTGGAGG CTGCCACAAGACCGTGTCCCCCTGAGAGCTGGCTGTGGAGG < 41bp 0.718001650910649 0.42970507807093 0.24207559 0.16852969 prediction 0.436003301821298 Functional Loss - FBLIM1 ENSG00000162458 CDS Human protein_coding chr1:16096937 chr1:16096939 stopgain 0.997 0 23 hm5C_associated_SNPs_83333 0 0 0 0 1 FBLIM1 chr1:16096904 3'AG 16096904 Downstream 36bp
chr11 118828846 118828846 1 + C T UCEC 118828844 + 118828824 118828864 41 ATTGGGCTGGGTATGGCCCGCACAGGGGGCATGGTGGTCAT ATTGGGCTGGGTATGGCCCGCATAGGGGGCATGGTGGTCAT < 41bp 0.810092951953115 0.59209698799191 0.14779678 0.26697314 prediction 0.435991927922409 Functional Loss - UPK2 ENSG00000110375 CDS Human protein_coding chr11:118828844 chr11:118828846 nonsynonymous SNV 0.982 4 23 hm5C_associated_SNPs_83336 0 0 0 0 1 UPK2 chr11:118828807 3'AG 118828807 Downstream 40bp
chr3 9959648 9959648 1 + C T SKCM 9959646 + 9959626 9959666 41 GCCTGGGGACATCGTGCCTGCTCCGGGCCCCGTGCTGGCGC GCCTGGGGACATCGTGCCTGCTTCGGGCCCCGTGCTGGCGC < 41bp 0.823291546623724 0.605298234628654 0.2310488 0.1045391 prediction 0.435986623990139 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9959646 chr3:9959648 nonsynonymous SNV 0.024 1 23 hm5C_associated_SNPs_83338 0 0 1 0 2 IL17RC chr3:9959607 3'AG 9959607 Downstream 42bp
chr3 9959648 9959648 1 + C T SKCM 9959646 + 9959626 9959666 41 GCCTGGGGACATCGTGCCTGCTCCGGGCCCCGTGCTGGCGC GCCTGGGGACATCGTGCCTGCTTCGGGCCCCGTGCTGGCGC < 41bp 0.823291546623724 0.605298234628654 0.2310488 0.1045391 prediction 0.435986623990139 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9959646 chr3:9959648 nonsynonymous SNV 0.024 1 23 hm5C_associated_SNPs_83338 0 0 1 0 2 IL17RC chr3:9959611 3'AG 9959611 Downstream 38bp
chr10 12123550 12123550 1 + C T rs138526346 12123547 + 12123527 12123567 41 GCCAAAATCAACCCCCTCTTCACCGGACAAGCCCTGCTGGA GCCAAAATCAACCCCCTCTTCACTGGACAAGCCCTGCTGGA < 41bp 0.717992692067657 0.499244826131945 0.17879272 0.24411875 prediction 0.435985384135314 Functional Loss - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12123547 chr10:12123550 synonymous SNV . 0 24 hm5C_associated_SNPs_83339 0 0 1 0 2 DHTKD1 chr10:12123471 3'AG 12123471 Downstream 80bp
chr10 12123550 12123550 1 + C T rs138526346 12123547 + 12123527 12123567 41 GCCAAAATCAACCCCCTCTTCACCGGACAAGCCCTGCTGGA GCCAAAATCAACCCCCTCTTCACTGGACAAGCCCTGCTGGA < 41bp 0.717992692067657 0.499244826131945 0.17879272 0.24411875 prediction 0.435985384135314 Functional Loss - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12123547 chr10:12123550 synonymous SNV . 0 24 hm5C_associated_SNPs_83339 0 0 1 0 2 DHTKD1 chr10:12123626 5'GT 12123626 Upstream 77bp
chr19 49867985 49867985 1 + C T SKCM 49867982 + 49867962 49868002 41 TCACAGGCCTCCAGAGCCTACTCCAAGGCTTCAGCCGACTT TCACAGGCCTCCAGAGCCTACTCTAAGGCTTCAGCCGACTT < 41bp 0.743281228314658 0.525293358465748 0.94761044 0.9217532 prediction 0.43597573969782 Functional Loss - DKKL1 ENSG00000104901 CDS Human protein_coding chr19:49867982 chr19:49867985 stopgain 0.438 1 24 hm5C_associated_SNPs_83341 0 0 0 0 1 DKKL1 chr19:49868011 5'GT 49868011 Upstream 27bp
chr2 220396544 220396544 1 + G T LUAD 220396542 + 220396522 220396562 41 CCGCGGAGCTCGCTGCCCAGCCGGGCAGGGGGCATGGGCAG CCGCGGAGCTCGCTGCCCAGCCTGGCAGGGGGCATGGGCAG < 41bp 0.717987500789107 0.342916793184774 0.56202984 0.09161851 prediction 0.435975001578215 Functional Loss - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220396542 chr2:220396544 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_83342 0 0 1 0 2 ASIC4 chr2:220396480 3'AG 220396480 Downstream 65bp
chr2 220396544 220396544 1 + G T LUAD 220396542 + 220396522 220396562 41 CCGCGGAGCTCGCTGCCCAGCCGGGCAGGGGGCATGGGCAG CCGCGGAGCTCGCTGCCCAGCCTGGCAGGGGGCATGGGCAG < 41bp 0.717987500789107 0.342916793184774 0.56202984 0.09161851 prediction 0.435975001578215 Functional Loss - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220396542 chr2:220396544 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_83342 0 0 1 0 2 ASIC4 chr2:220396624 5'GT 220396624 Upstream 81bp
chr11 113265695 113265695 1 + G A SKCM 113265692 + 113265672 113265712 41 AAGTGGATGGAACAGTCCACCCGGATGCAGTACATCGAGAG AAGTGGATGGAACAGTCCACCCGAATGCAGTACATCGAGAG < 41bp 0.717986843776433 0.474152969150342 0.48365667 0.12482506 prediction 0.435973687552866 Functional Loss - ANKK1 ENSG00000170209 CDS Human protein_coding chr11:113265692 chr11:113265695 synonymous SNV . 0 24 hm5C_associated_SNPs_83343 0 0 0 0 1 ANKK1 chr11:113265651 3'AG 113265651 Downstream 45bp
chr6 44376338 44376338 1 + G A COAD 44376335 + 44376315 44376355 41 CAGCGTTGCTCTTAGAACACCACGAACACCAGCTTCCCAGG CAGCGTTGCTCTTAGAACACCACAAACACCAGCTTCCCAGG < 41bp 0.788342350409641 0.570360249546064 0.11997229 0.118932486 prediction 0.435964201727153 Functional Loss - CDC5L ENSG00000096401 CDS Human protein_coding chr6:44376335 chr6:44376338 nonsynonymous SNV 0.926 2 24 hm5C_associated_SNPs_83345 0 0 1 0 1 CDC5L chr6:44376369 5'GT 44376369 Upstream 32bp
chr1 171303641 171303641 1 + G T READ 171303639 + 171303619 171303659 41 AACCAGCGTGATTGAATTTACAGAAACCTCTGCTGTCTTTG AACCAGCGTGATTGAATTTACATAAACCTCTGCTGTCTTTG < 41bp 0.717981380878579 0.366295689890447 0.15295088 0.051379353 prediction 0.435962761757157 Functional Loss - FMO4 ENSG00000076258 CDS Human protein_coding chr1:171303639 chr1:171303641 stopgain 0.976 1 23 hm5C_associated_SNPs_83346 0 0 0 0 1 FMO4 chr1:171303550 3'AG 171303550 Downstream 92bp
chr15 76630126 76630126 1 + C T COAD 76630124 + 76630104 76630144 41 GCCCTTCCCCGGCAGAGAAGCCCGGGACGGCCATGTGCGTG GCCCTTCCCCGGCAGAGAAGCCTGGGACGGCCATGTGCGTG < 41bp 0.717981108130624 0.481644447146469 0.39825705 0.73242676 prediction 0.435962216261247 Functional Loss - ISL2 ENSG00000159556 CDS Human protein_coding chr15:76630124 chr15:76630126 synonymous SNV . 0 23 hm5C_associated_SNPs_83347 0 0 1 0 1 ISL2 chr15:76630119 3'AG 76630119 Downstream 8bp
chr9 133948025 133948025 1 + G A LUSC 133948022 + 133948002 133948042 41 GTGGGCTTCCCATAGGGGCTCGGGAAGCCTTCCTGGAGCAG GTGGGCTTCCCATAGGGGCTCGGAAAGCCTTCCTGGAGCAG < 41bp 0.717979303636043 0.462225817643864 0.91733944 0.41534847 prediction 0.435958607272086 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133948022 chr9:133948025 nonsynonymous SNV 0.096 0 24 hm5C_associated_SNPs_83348 0 0 0 0 1 LAMC3 chr9:133948017 3'AG 133948017 Downstream 9bp
chr2 239033970 239033970 1 + G A COAD 239033967 + 239033947 239033987 41 CCCCCACCTCCACTGTTGGCCACGAGGCGCTCCCTGGAGGA CCCCCACCTCCACTGTTGGCCACAAGGCGCTCCCTGGAGGA < 41bp 0.815020726718865 0.597046689297205 0.22263634 0.33786765 prediction 0.43594807484332 Functional Loss - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239033967 chr2:239033970 synonymous SNV . 0 24 hm5C_associated_SNPs_83350 0 0 0 0 2 ESPNL chr2:239033911 3'AG 239033911 Downstream 60bp
chr2 239033970 239033970 1 + G A COAD 239033967 + 239033947 239033987 41 CCCCCACCTCCACTGTTGGCCACGAGGCGCTCCCTGGAGGA CCCCCACCTCCACTGTTGGCCACAAGGCGCTCCCTGGAGGA < 41bp 0.815020726718865 0.597046689297205 0.22263634 0.33786765 prediction 0.43594807484332 Functional Loss - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239033967 chr2:239033970 synonymous SNV . 0 24 hm5C_associated_SNPs_83350 0 0 0 0 2 ESPNL chr2:239034025 5'GT 239034025 Upstream 56bp
chr2 25366693 25366693 1 + C T COAD 25366691 + 25366671 25366711 41 CTGGGAGGCAGTGGCTACAACTCGGACCGGCTCTGCCTGCC CTGGGAGGCAGTGGCTACAACTTGGACCGGCTCTGCCTGCC < 41bp 0.717973810794204 0.432778706655712 0.124513 0.12669063 prediction 0.435947621588408 Functional Loss - EFR3B ENSG00000084710 CDS Human protein_coding chr2:25366691 chr2:25366693 nonsynonymous SNV 0.763 0 23 hm5C_associated_SNPs_83351 0 0 0 0 2 EFR3B chr2:25366604 3'AG 25366604 Downstream 90bp
chr2 25366693 25366693 1 + C T COAD 25366691 + 25366671 25366711 41 CTGGGAGGCAGTGGCTACAACTCGGACCGGCTCTGCCTGCC CTGGGAGGCAGTGGCTACAACTTGGACCGGCTCTGCCTGCC < 41bp 0.717973810794204 0.432778706655712 0.124513 0.12669063 prediction 0.435947621588408 Functional Loss - EFR3B ENSG00000084710 CDS Human protein_coding chr2:25366691 chr2:25366693 nonsynonymous SNV 0.763 0 23 hm5C_associated_SNPs_83351 0 0 0 0 2 EFR3B chr2:25366731 5'GT 25366731 Upstream 39bp
chr3 184081340 184081340 1 + G A ESCA 184081337 + 184081317 184081357 41 AAGGATATTGACCCGGAGGGCAAGAAGTTTGACCGAGGTAA AAGGATATTGACCCGGAGGGCAAAAAGTTTGACCGAGGTAA < 41bp 0.769814424902399 0.551843391327757 0.24872935 0.09060183 prediction 0.435942067149284 Functional Loss - POLR2H ENSG00000163882 CDS Human protein_coding chr3:184081337 chr3:184081340 synonymous SNV . 0 24 hm5C_associated_SNPs_83352 0 0 1 0 1 POLR2H chr3:184081353 5'GT 184081353 Upstream 14bp
chr12 109509481 109509481 1 + G A rs138385201 109509478 + 109509458 109509498 41 AGATGAGCGAGACCGCCAGCCTCGGGTCACACATTTGTTTG AGATGAGCGAGACCGCCAGCCTCAGGTCACACATTTGTTTG < 41bp 0.793751016076858 0.575781264742757 0.16816452 0.08016327 prediction 0.435939502668202 Functional Loss - USP30 ENSG00000135093 CDS Human protein_coding chr12:109509478 chr12:109509481 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_83353 0 0 0 0 2 USP30 chr12:109509417 3'AG 109509417 Downstream 65bp
chr12 109509481 109509481 1 + G A rs138385201 109509478 + 109509458 109509498 41 AGATGAGCGAGACCGCCAGCCTCGGGTCACACATTTGTTTG AGATGAGCGAGACCGCCAGCCTCAGGTCACACATTTGTTTG < 41bp 0.793751016076858 0.575781264742757 0.16816452 0.08016327 prediction 0.435939502668202 Functional Loss - USP30 ENSG00000135093 CDS Human protein_coding chr12:109509478 chr12:109509481 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_83353 0 0 0 0 2 USP30 chr12:109509515 5'GT 109509515 Upstream 35bp
chr19 55105924 55105924 1 + G A COAD 55105921 + 55105901 55105941 41 TCCAGGGCTGAGTCTGGGCCCCCGGACCCACGTGCAGGCAG TCCAGGGCTGAGTCTGGGCCCCCAGACCCACGTGCAGGCAG < 41bp 0.71796694812493 0.468296001702659 0.2966801 0.18829635 prediction 0.435933896249861 Functional Loss - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55105921 chr19:55105924 nonsynonymous SNV 0.005 3 24 hm5C_associated_SNPs_83354 0 0 0 0 2 LILRA1 chr19:55105906 3'AG 55105906 Downstream 19bp
chr19 55105924 55105924 1 + G A COAD 55105921 + 55105901 55105941 41 TCCAGGGCTGAGTCTGGGCCCCCGGACCCACGTGCAGGCAG TCCAGGGCTGAGTCTGGGCCCCCAGACCCACGTGCAGGCAG < 41bp 0.71796694812493 0.468296001702659 0.2966801 0.18829635 prediction 0.435933896249861 Functional Loss - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55105921 chr19:55105924 nonsynonymous SNV 0.005 3 24 hm5C_associated_SNPs_83354 0 0 0 0 2 LILRA1 chr19:55105941 5'GT 55105941 Upstream 18bp
chr2 219301212 219301212 1 + G A SKCM 219301209 + 219301189 219301229 41 TCTCTCCATCCTGCAGACTACAGGAAGAAAACCTGGTCATC TCTCTCCATCCTGCAGACTACAGAAAGAAAACCTGGTCATC < 41bp 0.780813792474336 0.562847905836201 0.4197769 0.15994173 prediction 0.435931773276271 Functional Loss - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219301209 chr2:219301212 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_83356 0 0 0 0 1 VIL1 chr2:219301205 3'AG 219301205 Downstream 8bp
chr2 15743351 15743351 1 + G A STAD 15743348 + 15743328 15743368 41 ATGAAGTATCCTGTCATGACCAAGGGTTATGCAGGGTCGGG ATGAAGTATCCTGTCATGACCAAAGGTTATGCAGGGTCGGG < 41bp 0.781745480023196 0.563780299431806 0.48547962 0.23497146 prediction 0.43593036118278 Functional Loss - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15743348 chr2:15743351 nonsynonymous SNV 0.944 4 24 hm5C_associated_SNPs_83357 0 0 1 0 2 DDX1 chr2:15743316 3'AG 15743316 Downstream 36bp
chr2 15743351 15743351 1 + G A STAD 15743348 + 15743328 15743368 41 ATGAAGTATCCTGTCATGACCAAGGGTTATGCAGGGTCGGG ATGAAGTATCCTGTCATGACCAAAGGTTATGCAGGGTCGGG < 41bp 0.781745480023196 0.563780299431806 0.48547962 0.23497146 prediction 0.43593036118278 Functional Loss - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15743348 chr2:15743351 nonsynonymous SNV 0.944 4 24 hm5C_associated_SNPs_83357 0 0 1 0 2 DDX1 chr2:15743399 5'GT 15743399 Upstream 49bp
chr22 38046672 38046672 1 - C A rs142801645 38046674 - 38046654 38046694 41 AGCTGGAGCTGGAGCCGGAGCCGGAGCCGGGGTGGTGGCTG AGCTGGAGCTGGAGCCGGAGCCTGAGCCGGGGTGGTGGCTG < 41bp 0.904844503374521 0.686880709852065 0.9192674 0.8509734 prediction 0.435927587044911 Functional Loss - SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38046674 chr22:38046672 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_83358 0 0 0 0 1 SH3BP1 chr22:38046719 3'AG 38046719 Downstream 48bp
chr19 17992829 17992829 1 + T C READ 17992828 + 17992808 17992848 41 TGTAGAAGACCTCATCAAACCTCGGCTGCGGAGCCTGGCAC TGTAGAAGACCTCATCAAACCCCGGCTGCGGAGCCTGGCAC < 41bp 0.830662144846547 0.612699621808783 0.40934557 0.34698945 prediction 0.435925046075528 Functional Loss - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17992828 chr19:17992829 synonymous SNV . 0 22 hm5C_associated_SNPs_83359 0 0 1 0 2 SLC5A5 chr19:17992769 3'AG 17992769 Downstream 61bp
chr19 17992829 17992829 1 + T C READ 17992828 + 17992808 17992848 41 TGTAGAAGACCTCATCAAACCTCGGCTGCGGAGCCTGGCAC TGTAGAAGACCTCATCAAACCCCGGCTGCGGAGCCTGGCAC < 41bp 0.830662144846547 0.612699621808783 0.40934557 0.34698945 prediction 0.435925046075528 Functional Loss - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17992828 chr19:17992829 synonymous SNV . 0 22 hm5C_associated_SNPs_83359 0 0 1 0 2 SLC5A5 chr19:17992881 5'GT 17992881 Upstream 53bp
chr9 123907182 123907182 1 + G A SKCM 123907179 + 123907159 123907199 41 ACAAGCAGCCAGAGATCTCACCCGAGCAGAAGCTGAGATCG ACAAGCAGCCAGAGATCTCACCCAAGCAGAAGCTGAGATCG < 41bp 0.775672506891202 0.557710803082189 0.05569327 0.03608316 prediction 0.435923407618026 Functional Loss - CNTRL ENSG00000119397 CDS Human protein_coding chr9:123907179 chr9:123907182 nonsynonymous SNV 0.866 2 24 hm5C_associated_SNPs_83360 0 0 1 0 2 CNTRL chr9:123907121 3'AG 123907121 Downstream 62bp
chr9 123907182 123907182 1 + G A SKCM 123907179 + 123907159 123907199 41 ACAAGCAGCCAGAGATCTCACCCGAGCAGAAGCTGAGATCG ACAAGCAGCCAGAGATCTCACCCAAGCAGAAGCTGAGATCG < 41bp 0.775672506891202 0.557710803082189 0.05569327 0.03608316 prediction 0.435923407618026 Functional Loss - CNTRL ENSG00000119397 CDS Human protein_coding chr9:123907179 chr9:123907182 nonsynonymous SNV 0.866 2 24 hm5C_associated_SNPs_83360 0 0 1 0 2 CNTRL chr9:123907237 5'GT 123907237 Upstream 56bp
chr5 68809848 68809848 1 + G A UVM 68809845 + 68809825 68809865 41 AATTTTCTTTGCTGTGAAAACTCGAAGAAAGATGGACAGGT AATTTTCTTTGCTGTGAAAACTCAAAGAAAGATGGACAGGT < 41bp 0.722822053909048 0.504861659804191 0.30694544 0.2862806 prediction 0.435920788209714 Functional Loss - OCLN ENSG00000197822 CDS Human protein_coding chr5:68809845 chr5:68809848 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_83361 0 0 1 0 2 OCLN chr5:68809775 3'AG 68809775 Downstream 74bp
chr5 68809848 68809848 1 + G A UVM 68809845 + 68809825 68809865 41 AATTTTCTTTGCTGTGAAAACTCGAAGAAAGATGGACAGGT AATTTTCTTTGCTGTGAAAACTCAAAGAAAGATGGACAGGT < 41bp 0.722822053909048 0.504861659804191 0.30694544 0.2862806 prediction 0.435920788209714 Functional Loss - OCLN ENSG00000197822 CDS Human protein_coding chr5:68809845 chr5:68809848 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_83361 0 0 1 0 2 OCLN chr5:68809936 5'GT 68809936 Upstream 89bp
chr5 130726763 130726763 1 + C T rs143328559 130726761 + 130726741 130726781 41 CTGCCAATGTCCAGATGCAGCTCGTGGATACGAAGGCGGGA CTGCCAATGTCCAGATGCAGCTTGTGGATACGAAGGCGGGA < 41bp 0.717951494423578 0.443377138723785 0.10245976 0.06591827 prediction 0.435902988847157 Functional Loss - CDC42SE2 ENSG00000158985 CDS Human protein_coding chr5:130726761 chr5:130726763 synonymous SNV . 0 23 hm5C_associated_SNPs_83364 0 0 1 0 2 CDC42SE2 chr5:130726686 3'AG 130726686 Downstream 78bp
chr5 130726763 130726763 1 + C T rs143328559 130726761 + 130726741 130726781 41 CTGCCAATGTCCAGATGCAGCTCGTGGATACGAAGGCGGGA CTGCCAATGTCCAGATGCAGCTTGTGGATACGAAGGCGGGA < 41bp 0.717951494423578 0.443377138723785 0.10245976 0.06591827 prediction 0.435902988847157 Functional Loss - CDC42SE2 ENSG00000158985 CDS Human protein_coding chr5:130726761 chr5:130726763 synonymous SNV . 0 23 hm5C_associated_SNPs_83364 0 0 1 0 2 CDC42SE2 chr5:130726801 5'GT 130726801 Upstream 39bp
chr12 113531853 113531853 1 + C T UCEC 113531851 + 113531831 113531871 41 GTGTCCCTGCAGGTAAGAATCCCGAGGATGTGGTTCGAAGA GTGTCCCTGCAGGTAAGAATCCTGAGGATGTGGTTCGAAGA < 41bp 0.717948036081326 0.427110308278694 0.6813684 0.24881914 prediction 0.435896072162653 Functional Loss - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113531851 chr12:113531853 synonymous SNV . 0 23 hm5C_associated_SNPs_83367 0 0 0 0 2 DTX1 chr12:113531843 3'AG 113531843 Downstream 11bp
chr12 113531853 113531853 1 + C T UCEC 113531851 + 113531831 113531871 41 GTGTCCCTGCAGGTAAGAATCCCGAGGATGTGGTTCGAAGA GTGTCCCTGCAGGTAAGAATCCTGAGGATGTGGTTCGAAGA < 41bp 0.717948036081326 0.427110308278694 0.6813684 0.24881914 prediction 0.435896072162653 Functional Loss - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113531851 chr12:113531853 synonymous SNV . 0 23 hm5C_associated_SNPs_83367 0 0 0 0 2 DTX1 chr12:113531904 5'GT 113531904 Upstream 52bp
chr10 98078212 98078212 1 + G A UCEC 98078209 + 98078189 98078229 41 TCAGCTCACAACCAGAGCTCCTCGATGTCTCCTGGCTGATC TCAGCTCACAACCAGAGCTCCTCAATGTCTCCTGGCTGATC < 41bp 0.787663206830582 0.569720607669994 0.5447586 0.7102461 prediction 0.435885198321176 Functional Loss - DNTT ENSG00000107447 CDS Human protein_coding chr10:98078209 chr10:98078212 nonsynonymous SNV 0.423 1 24 hm5C_associated_SNPs_83370 0 0 0 0 1 DNTT chr10:98078283 5'GT 98078283 Upstream 72bp
chr6 153073323 153073323 1 + G T UCEC 153073320 + 153073300 153073340 41 TAGAGGCACAGAAATGGACACCAGAAATAAGGCCCAGCTCC TAGAGGCACAGAAATGGACACCATAAATAAGGCCCAGCTCC < 41bp 0.717937847136222 0.335925104943743 0.13565195 0.0046053827 prediction 0.435875694272444 Functional Loss - VIP ENSG00000146469 CDS Human protein_coding chr6:153073320 chr6:153073323 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_83372 0 0 0 0 2 VIP chr6:153073303 3'AG 153073303 Downstream 21bp
chr6 153073323 153073323 1 + G T UCEC 153073320 + 153073300 153073340 41 TAGAGGCACAGAAATGGACACCAGAAATAAGGCCCAGCTCC TAGAGGCACAGAAATGGACACCATAAATAAGGCCCAGCTCC < 41bp 0.717937847136222 0.335925104943743 0.13565195 0.0046053827 prediction 0.435875694272444 Functional Loss - VIP ENSG00000146469 CDS Human protein_coding chr6:153073320 chr6:153073323 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_83372 0 0 0 0 2 VIP chr6:153073419 5'GT 153073419 Upstream 97bp
chr1 156737935 156737935 1 + T C STAD 156737934 + 156737914 156737954 41 CCCTGGCCTCAATCTGCCCCCTCCAATTGGCGGTGCCGGTC CCCTGGCCTCAATCTGCCCCCCCCAATTGGCGGTGCCGGTC < 41bp 0.817948260428663 0.600013397991781 0.9527117 0.004959464 prediction 0.435869724873764 Functional Loss - PRCC ENSG00000143294 CDS Human protein_coding chr1:156737934 chr1:156737935 synonymous SNV . 0 22 hm5C_associated_SNPs_83373 0 0 1 0 1 PRCC chr1:156738031 5'GT 156738031 Upstream 97bp
chr3 42729774 42729774 1 + G A rs150475700 42729771 + 42729751 42729791 41 GACGGCGAGCGCTGCCTGGACTCGGTCATGTGCTACGACAG GACGGCGAGCGCTGCCTGGACTCAGTCATGTGCTACGACAG < 41bp 0.808989580863816 0.591054929341526 0.053498775 0.039584786 prediction 0.43586930304458 Functional Loss - KLHL40 ENSG00000157119 CDS Human protein_coding chr3:42729771 chr3:42729774 synonymous SNV . 0 24 hm5C_associated_SNPs_83374 0 0 0 0 1 KLHL40 chr3:42729794 5'GT 42729794 Upstream 21bp
chr2 27259640 27259640 1 + G T LAML 27259638 + 27259618 27259658 41 CTCCCTTTGCCATCACATACCTGGATCGGCTGCTCCTGTGA CTCCCTTTGCCATCACATACCTTGATCGGCTGCTCCTGTGA < 41bp 0.911065311419275 0.69313866615269 0.26844332 0.022980273 prediction 0.43585329053317 Functional Loss - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27259638 chr2:27259640 synonymous SNV . 0 23 hm5C_associated_SNPs_83376 0 0 1 0 1 TMEM214 chr2:27259654 5'GT 27259654 Upstream 15bp
chr1 29606640 29606640 1 + G A UCEC 29606637 + 29606617 29606657 41 TGCTGAGGCCGGCACAGGGCCGCGGTGCGCCCATCAGGTGG TGCTGAGGCCGGCACAGGGCCGCAGTGCGCCCATCAGGTGG < 41bp 0.813155749056835 0.595230252839579 0.285641 0.08737883 prediction 0.435850992434514 Functional Loss - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29606637 chr1:29606640 nonsynonymous SNV 0.375 4 24 hm5C_associated_SNPs_83379 0 0 1 0 2 PTPRU chr1:29606551 3'AG 29606551 Downstream 90bp
chr1 29606640 29606640 1 + G A UCEC 29606637 + 29606617 29606657 41 TGCTGAGGCCGGCACAGGGCCGCGGTGCGCCCATCAGGTGG TGCTGAGGCCGGCACAGGGCCGCAGTGCGCCCATCAGGTGG < 41bp 0.813155749056835 0.595230252839579 0.285641 0.08737883 prediction 0.435850992434514 Functional Loss - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29606637 chr1:29606640 nonsynonymous SNV 0.375 4 24 hm5C_associated_SNPs_83379 0 0 1 0 2 PTPRU chr1:29606653 5'GT 29606653 Upstream 14bp
chrX 153048458 153048458 1 + G A UCEC 153048455 + 153048435 153048475 41 ACCAAGTGCAAGATCATCCACACGGACATCAAGCCCGAGAA ACCAAGTGCAAGATCATCCACACAGACATCAAGCCCGAGAA < 41bp 0.717925298248871 0.470432555898416 0.12254873 0.04143101 prediction 0.435850596497742 Functional Loss - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153048455 chrX:153048458 synonymous SNV . 0 24 hm5C_associated_SNPs_83380 0 0 0 0 1 SRPK3 chrX:153048408 3'AG 153048408 Downstream 51bp
chr1 93913852 93913852 1 + C T COAD 93913850 + 93913830 93913870 41 AGTTCCGCCATGAGCTGGGGCACGGAGCTGTGGGTGAGTCG AGTTCCGCCATGAGCTGGGGCATGGAGCTGTGGGTGAGTCG < 41bp 0.778188077730292 0.560262924625432 0.41763952 0.43445498 prediction 0.43585030620972 Functional Loss - FNBP1L ENSG00000137942 CDS Human protein_coding chr1:93913850 chr1:93913852 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_83381 0 0 1 0 1 FNBP1L chr1:93913862 5'GT 93913862 Upstream 11bp
chr1 25757646 25757646 1 + G A rs369738026 25757643 + 25757623 25757663 41 CGCCGCCCCCTAAAGCGGAACCGGATCACCGAGGGCATTTA CGCCGCCCCCTAAAGCGGAACCGAATCACCGAGGGCATTTA < 41bp 0.717923359749996 0.484249349980994 0.46937028 0.15355438 prediction 0.435846719499993 Functional Loss - TMEM57 ENSG00000204178 CDS Human protein_coding chr1:25757643 chr1:25757646 synonymous SNV . 0 24 hm5C_associated_SNPs_83382 0 0 1 1 1 TMEM57 chr1:25757669 5'GT 25757669 Upstream 24bp
chr10 118960782 118960782 1 + G A SKCM 118960779 + 118960759 118960799 41 AGCTCGCTCTTTTTCTGCTGCACGGTGTTCAGCACCGTGGG AGCTCGCTCTTTTTCTGCTGCACAGTGTTCAGCACCGTGGG < 41bp 0.8089379609176 0.591015957841251 0.20806989 0.10333794 prediction 0.435844006152697 Functional Loss - KCNK18 ENSG00000186795 CDS Human protein_coding chr10:118960779 chr10:118960782 synonymous SNV . 0 24 hm5C_associated_SNPs_83385 0 0 0 0 1 KCNK18 chr10:118960798 5'GT 118960798 Upstream 17bp
chr6 117232185 117232185 1 + G A LUSC 117232182 + 117232162 117232202 41 GCGCTCAACACCTTGTATACCAAGGATGCATTTCTAAGGAC GCGCTCAACACCTTGTATACCAAAGATGCATTTCTAAGGAC < 41bp 0.717919043181675 0.482366387607079 0.30244717 0.18735221 prediction 0.435838086363349 Functional Loss - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117232182 chr6:117232185 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_83386 0 0 0 0 1 RFX6 chr6:117232205 5'GT 117232205 Upstream 21bp
chr7 150710956 150710956 1 - G A BLCA 150710958 - 150710938 150710978 41 TCGTCCAGCTCCATGTCGCCCTCCGTCGCCAGGATGCGCTG TCGTCCAGCTCCATGTCGCCCTTCGTCGCCAGGATGCGCTG < 41bp 0.71791602564019 0.437064407433358 0.060748458 0.093943864 prediction 0.435832051280381 Functional Loss - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150710958 chr7:150710956 nonsynonymous SNV 0.910 1 23 hm5C_associated_SNPs_83388 0 0 0 0 1 NOS3 chr7:150711000 3'AG 150711000 Downstream 45bp
chr9 91090081 91090081 1 + G A BLCA 91090078 + 91090058 91090098 41 GAATATGCCAAAGAAGATGGCTCGAAAAGGACTGGCATGGT GAATATGCCAAAGAAGATGGCTCAAAAAGGACTGGCATGGT < 41bp 0.729160812662844 0.511253135145174 0.08716518 0.026100218 prediction 0.435815355035339 Functional Loss - SPIN1 ENSG00000106723 CDS Human protein_coding chr9:91090078 chr9:91090081 synonymous SNV . 0 24 hm5C_associated_SNPs_83390 0 0 1 0 1 SPIN1 chr9:91089993 3'AG 91089993 Downstream 89bp
chr16 88871912 88871912 1 + G A rs577211739 88871909 + 88871889 88871929 41 CCCAGCCCGGCCTGCCGGGACTCGTGCTGCCCTACAAGTAC CCCAGCCCGGCCTGCCGGGACTCATGCTGCCCTACAAGTAC < 41bp 0.717903555635723 0.470181131481944 0.09708658 0.051519543 prediction 0.435807111271447 Functional Loss - CDT1 ENSG00000167513 CDS Human protein_coding chr16:88871909 chr16:88871912 nonsynonymous SNV 0.557 1 24 hm5C_associated_SNPs_83395 0 0 1 0 1 CDT1 chr16:88871848 3'AG 88871848 Downstream 65bp
chr1 19992948 19992948 1 + G A BRCA 19992945 + 19992925 19992965 41 ACCGGCATGGCCAGTCAGGCCTCGGAGACGCTGCAGGTACC ACCGGCATGGCCAGTCAGGCCTCAGAGACGCTGCAGGTACC < 41bp 0.784538247513228 0.566634827112565 0.210468 0.14101666 prediction 0.435806840801326 Functional Loss - HTR6 ENSG00000158748 CDS Human protein_coding chr1:19992945 chr1:19992948 synonymous SNV . 0 24 hm5C_associated_SNPs_83396 0 0 0 0 1 HTR6 chr1:19992960 5'GT 19992960 Upstream 13bp
chr17 9503462 9503462 1 + C T COAD 9503459 + 9503439 9503479 41 AAATGAACCCCAGGACTAAACTGCTGACAGATGTTGGGCCT AAATGAACCCCAGGACTAAACTGTTGACAGATGTTGGGCCT < 41bp 0.71789651454812 0.493366081258433 0.19258323 0.17884555 prediction 0.43579302909624 Functional Loss - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9503459 chr17:9503462 synonymous SNV . 0 24 hm5C_associated_SNPs_83403 0 0 0 0 2 CFAP52 chr17:9503384 3'AG 9503384 Downstream 79bp
chr17 9503462 9503462 1 + C T COAD 9503459 + 9503439 9503479 41 AAATGAACCCCAGGACTAAACTGCTGACAGATGTTGGGCCT AAATGAACCCCAGGACTAAACTGTTGACAGATGTTGGGCCT < 41bp 0.71789651454812 0.493366081258433 0.19258323 0.17884555 prediction 0.43579302909624 Functional Loss - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9503459 chr17:9503462 synonymous SNV . 0 24 hm5C_associated_SNPs_83403 0 0 0 0 2 CFAP52 chr17:9503500 5'GT 9503500 Upstream 39bp
chr11 65481111 65481111 1 + G A ESCA 65481108 + 65481088 65481128 41 CCAGCAACTCCAGTGCCCAGCGAGACAGCCCCGGCCTCGGT CCAGCAACTCCAGTGCCCAGCGAAACAGCCCCGGCCTCGGT < 41bp 0.806146107226506 0.588251675300512 0.89473057 0.823594 prediction 0.435788863851986 Functional Loss - KAT5 ENSG00000172977 CDS Human protein_coding chr11:65481108 chr11:65481111 synonymous SNV . 0 24 hm5C_associated_SNPs_83404 0 0 1 0 2 KAT5 chr11:65481064 3'AG 65481064 Downstream 48bp
chr11 65481111 65481111 1 + G A ESCA 65481108 + 65481088 65481128 41 CCAGCAACTCCAGTGCCCAGCGAGACAGCCCCGGCCTCGGT CCAGCAACTCCAGTGCCCAGCGAAACAGCCCCGGCCTCGGT < 41bp 0.806146107226506 0.588251675300512 0.89473057 0.823594 prediction 0.435788863851986 Functional Loss - KAT5 ENSG00000172977 CDS Human protein_coding chr11:65481108 chr11:65481111 synonymous SNV . 0 24 hm5C_associated_SNPs_83404 0 0 1 0 2 KAT5 chr11:65481138 5'GT 65481138 Upstream 28bp
chr2 220046823 220046823 1 + C T COAD 220046821 + 220046801 220046841 41 AGGAGGGAGAGCTGGCCCCTCCCGAAGACCTACTAGGCCGT AGGAGGGAGAGCTGGCCCCTCCTGAAGACCTACTAGGCCGT < 41bp 0.717893796156114 0.444143169973238 0.81069696 0.2998146 prediction 0.435787592312229 Functional Loss - RETREG2 ENSG00000144567 CDS Human protein_coding chr2:220046821 chr2:220046823 synonymous SNV . 0 23 hm5C_associated_SNPs_83405 0 0 1 0 1 RETREG2 chr2:220046735 3'AG 220046735 Downstream 89bp
chr1 156594401 156594401 1 + G C CESC 156594400 + 156594380 156594420 41 CGTCTCCCGCCAGCTTGGACCGAGGGTCTGGACTGGTGTAA CGTCTCCCGCCAGCTTGGACCCAGGGTCTGGACTGGTGTAA < 41bp 0.889294176703716 0.671400470849619 0.9167317 0.89339733 prediction 0.435787411708194 Functional Loss - HAPLN2 ENSG00000132702 CDS Human protein_coding chr1:156594400 chr1:156594401 nonsynonymous SNV 0.782 4 22 hm5C_associated_SNPs_83406 0 0 1 0 1 HAPLN2 chr1:156594393 3'AG 156594393 Downstream 9bp
chr7 64349005 64349005 1 + G T rs73355758 64349001 + 64348981 64349021 41 TCTCCACCACCCAGCAGGAGCGGGGCGGCCTGGATCTGTTT TCTCCACCACCCAGCAGGAGCGGGTCGGCCTGGATCTGTTT < 41bp 0.747401783827215 0.529509255714601 0.9188519 0.34152806 prediction 0.435785056225229 Functional Loss - ZNF138;ZNF273 ENSG00000189316 ncRNA_exonic Human antisense chr7:64349001 chr7:64349005 . . 0 25 hm5C_associated_SNPs_83407 0 0 0 0 1 ZNF138;ZNF273 chr7:64348951 3'AG 64348951 Downstream 55bp
chr1 209929623 209929623 1 + G A rs138262577 209929620 + 209929600 209929640 41 GCCCAGGACTGGAATGCTTTCCCGAGTGGCTTGAGTTGGAG GCCCAGGACTGGAATGCTTTCCCAAGTGGCTTGAGTTGGAG < 41bp 0.752547738004691 0.534655675821843 0.2689107 0.15445322 prediction 0.435784124365696 Functional Loss - TRAF3IP3 ENSG00000009790 UTR5 Human protein_coding chr1:209929620 chr1:209929623 . . 0 24 hm5C_associated_SNPs_83408 0 0 0 0 1 TRAF3IP3 chr1:209929654 5'GT 209929654 Upstream 32bp
chr16 71668183 71668183 1 + G A PRAD 71668180 + 71668160 71668200 41 CAGTTCCACAGGGGGCTACACGGGCATCACCAGCTTGGGGG CAGTTCCACAGGGGGCTACACGGACATCACCAGCTTGGGGG < 41bp 0.799267005891806 0.581378248038353 0.8753784 0.35402662 prediction 0.435777515706905 Functional Loss - MARVELD3 ENSG00000140832 CDS Human protein_coding chr16:71668180 chr16:71668183 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_83409 0 0 0 0 1 MARVELD3 chr16:71668096 3'AG 71668096 Downstream 88bp
chr17 56332183 56332183 1 + G A COAD 56332180 + 56332160 56332200 41 CTGGGCTTTCAGGAGATTCTCGAGCCTCAGAGCATATTCTG CTGGGCTTTCAGGAGATTCTCGAACCTCAGAGCATATTCTG < 41bp 0.717882475814811 0.467644569854016 0.92975086 0.88631916 prediction 0.435764951629623 Functional Loss - LPO ENSG00000167419 CDS Human protein_coding chr17:56332180 chr17:56332183 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_83412 0 0 0 0 1 LPO chr17:56332172 3'AG 56332172 Downstream 12bp
chr19 57953332 57953332 1 + T C COAD 57953331 + 57953311 57953351 41 TTAATGATGCTCAGAGACACCTGCACAGCAATGTGATGTTG TTAATGATGCTCAGAGACACCCGCACAGCAATGTGATGTTG < 41bp 0.811848491979709 0.593967969682677 0.056363523 0.023890078 prediction 0.435761044594064 Functional Loss - ZNF749 ENSG00000186230 CDS Human protein_coding chr19:57953331 chr19:57953332 nonsynonymous SNV 0.165 3 22 hm5C_associated_SNPs_83413 0 0 1 0 2 ZNF749 chr19:57953253 3'AG 57953253 Downstream 80bp
chr19 57953332 57953332 1 + T C COAD 57953331 + 57953311 57953351 41 TTAATGATGCTCAGAGACACCTGCACAGCAATGTGATGTTG TTAATGATGCTCAGAGACACCCGCACAGCAATGTGATGTTG < 41bp 0.811848491979709 0.593967969682677 0.056363523 0.023890078 prediction 0.435761044594064 Functional Loss - ZNF749 ENSG00000186230 CDS Human protein_coding chr19:57953331 chr19:57953332 nonsynonymous SNV 0.165 3 22 hm5C_associated_SNPs_83413 0 0 1 0 2 ZNF749 chr19:57953379 5'GT 57953379 Upstream 48bp
chr1 156838333 156838333 1 + C T rs148324672 156838331 + 156838311 156838351 41 AAGGTCCAGGTGCCCAATGCCTCGGTGGATGTGGGGGACGA AAGGTCCAGGTGCCCAATGCCTTGGTGGATGTGGGGGACGA < 41bp 0.833151446652719 0.615272497205403 0.22324464 0.21494949 prediction 0.435757898894632 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156838331 chr1:156838333 nonsynonymous SNV 0.622 2 23 hm5C_associated_SNPs_83414 0 0 1 0 1 NTRK1 chr1:156838297 3'AG 156838297 Downstream 37bp
chr17 16325925 16325925 1 + G A UCEC 16325922 + 16325902 16325942 41 TCTTCCCACAGAGGGCTCCACAGGTAAGACGTGCCTGATGA TCTTCCCACAGAGGGCTCCACAGATAAGACGTGCCTGATGA < 41bp 0.717874897530402 0.469326678998145 0.42351848 0.27878645 prediction 0.435749795060805 Functional Loss - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16325922 chr17:16325925 nonsynonymous SNV 0.930 5 24 hm5C_associated_SNPs_83416 0 0 0 0 1 TRPV2 chr17:16325913 3'AG 16325913 Downstream 13bp
chr8 143761931 143761931 1 + C T rs2294008 143761929 + 143761909 143761949 41 CACCACAGCCCACCAGTGACCACGAAGGCTGTGCTGCTTGC CACCACAGCCCACCAGTGACCATGAAGGCTGTGCTGCTTGC < 41bp 0.717874207379493 0.479212798592159 0.103029996 0.063243896 prediction 0.435748414758985 Functional Loss - PSCA ENSG00000234616 ncRNA_exonic Human protein_coding chr8:143761929 chr8:143761931 . . 0 23 hm5C_associated_SNPs_83418 0 1 0 0 1 PSCA chr8:143761981 5'GT 143761981 Upstream 51bp
chr16 69965790 69965790 1 + C T UCEC 69965788 + 69965768 69965808 41 GGCCTGGACTATGGGGGCATCGCCAGGTGAGCTTGAGTGCC GGCCTGGACTATGGGGGCATCGTCAGGTGAGCTTGAGTGCC < 41bp 0.852608386442409 0.634736998463656 0.920612 0.85532355 prediction 0.435742775957506 Functional Loss - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69965788 chr16:69965790 nonsynonymous SNV 0.956 3 23 hm5C_associated_SNPs_83421 0 0 1 0 2 WWP2 chr16:69965705 3'AG 69965705 Downstream 86bp
chr16 69965790 69965790 1 + C T UCEC 69965788 + 69965768 69965808 41 GGCCTGGACTATGGGGGCATCGCCAGGTGAGCTTGAGTGCC GGCCTGGACTATGGGGGCATCGTCAGGTGAGCTTGAGTGCC < 41bp 0.852608386442409 0.634736998463656 0.920612 0.85532355 prediction 0.435742775957506 Functional Loss - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69965788 chr16:69965790 nonsynonymous SNV 0.956 3 23 hm5C_associated_SNPs_83421 0 0 1 0 2 WWP2 chr16:69965793 5'GT 69965793 Upstream 4bp
chr5 75596660 75596660 1 + G A SKCM 75596657 + 75596637 75596677 41 GATGATGACTATAGTGCCTACTGGATTTATTTTGTCAACTT GATGATGACTATAGTGCCTACTGAATTTATTTTGTCAACTT < 41bp 0.718470117432681 0.500602329713734 0.07273319 0.057194263 prediction 0.435735575437895 Functional Loss - SV2C ENSG00000122012 CDS Human protein_coding chr5:75596657 chr5:75596660 stopgain 1.000 1 24 hm5C_associated_SNPs_83422 0 0 0 0 1 SV2C chr5:75596757 5'GT 75596757 Upstream 98bp
chr2 135878405 135878405 1 + C T HNSC 135878402 + 135878382 135878422 41 TTCCTAGGGATGTCCTTTAACTCCATTGCCTCCAGTTAGTA TTCCTAGGGATGTCCTTTAACTCTATTGCCTCCAGTTAGTA < 41bp 0.748134824178872 0.530268594125238 0.9312998 0.29947585 prediction 0.435732460107269 Functional Loss - RAB3GAP1 ENSG00000115839 CDS Human protein_coding chr2:135878402 chr2:135878405 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_83424 0 0 1 0 2 RAB3GAP1 chr2:135878389 3'AG 135878389 Downstream 17bp
chr2 135878405 135878405 1 + C T HNSC 135878402 + 135878382 135878422 41 TTCCTAGGGATGTCCTTTAACTCCATTGCCTCCAGTTAGTA TTCCTAGGGATGTCCTTTAACTCTATTGCCTCCAGTTAGTA < 41bp 0.748134824178872 0.530268594125238 0.9312998 0.29947585 prediction 0.435732460107269 Functional Loss - RAB3GAP1 ENSG00000115839 CDS Human protein_coding chr2:135878402 chr2:135878405 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_83424 0 0 1 0 2 RAB3GAP1 chr2:135878488 5'GT 135878488 Upstream 84bp
chr19 16790829 16790829 1 + G A rs142123915 16790826 + 16790806 16790846 41 CTGTCCCGGCGCCACCCCATCGCGTCCTGGCTGTGCGCCAT CTGTCCCGGCGCCACCCCATCGCATCCTGGCTGTGCGCCAT < 41bp 0.808825278932111 0.590959869914098 0.5036386 0.31656528 prediction 0.435730818036027 Functional Loss - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16790826 chr19:16790829 synonymous SNV . 0 24 hm5C_associated_SNPs_83425 0 0 1 0 1 TMEM38A chr19:16790795 3'AG 16790795 Downstream 35bp
chr19 42352924 42352924 1 + C T rs145708066 42352921 + 42352901 42352941 41 AGCCTCGCCCTTGTCCTGGACTCCGGTGCCTCCTGGCCCTT AGCCTCGCCCTTGTCCTGGACTCTGGTGCCTCCTGGCCCTT < 41bp 0.726004734407363 0.50814325403806 0.15331799 0.21222717 prediction 0.435722960738606 Functional Loss - DMRTC2 ENSG00000142025 CDS Human protein_coding chr19:42352921 chr19:42352924 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_83427 0 0 0 0 1 DMRTC2 chr19:42352863 3'AG 42352863 Downstream 62bp
chr17 4804184 4804184 1 - G A STAD 4804186 - 4804166 4804206 41 CCAGCCGGCGGCCAGAAATGCACGGTCTCCATCAACGTCCT CCAGCCGGCGGCCAGAAATGCATGGTCTCCATCAACGTCCT < 41bp 0.831872457031291 0.614013082037043 0.10297063 0.07052252 prediction 0.435718749988498 Functional Loss - CHRNE ENSG00000108556 CDS Human protein_coding chr17:4804186 chr17:4804184 nonsynonymous SNV 0.960 5 23 hm5C_associated_SNPs_83431 0 0 0 0 2 CHRNE chr17:4804088 5'GT 4804088 Upstream 97bp
chr17 4804184 4804184 1 - G A STAD 4804186 - 4804166 4804206 41 CCAGCCGGCGGCCAGAAATGCACGGTCTCCATCAACGTCCT CCAGCCGGCGGCCAGAAATGCATGGTCTCCATCAACGTCCT < 41bp 0.831872457031291 0.614013082037043 0.10297063 0.07052252 prediction 0.435718749988498 Functional Loss - CHRNE ENSG00000108556 CDS Human protein_coding chr17:4804186 chr17:4804184 nonsynonymous SNV 0.960 5 23 hm5C_associated_SNPs_83431 0 0 0 0 2 CHRNE chr17:4804202 3'AG 4804202 Downstream 19bp
chr9 137982150 137982150 1 + G A UCEC 137982147 + 137982127 137982167 41 TCCACAGCAGACCATGTGTTCACGGGATGCCCGCACAAAAC TCCACAGCAGACCATGTGTTCACAGGATGCCCGCACAAAAC < 41bp 0.786886136697234 0.569027772896775 0.5240097 0.25889862 prediction 0.435716727600918 Functional Loss - OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137982147 chr9:137982150 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_83432 0 0 0 0 1 OLFM1 chr9:137982190 5'GT 137982190 Upstream 41bp
chr6 7390256 7390256 1 + C T rs112923583 7390254 + 7390234 7390274 41 TCATGGACTACCGGCGGCTTCTCATGAGCCGGGTGGTCCCC TCATGGACTACCGGCGGCTTCTTATGAGCCGGGTGGTCCCC < 41bp 0.803385936964115 0.585532222496569 0.63551617 0.5059965 prediction 0.435707428935092 Functional Loss - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7390254 chr6:7390256 synonymous SNV . 0 23 hm5C_associated_SNPs_83435 0 0 1 0 1 RIOK1 chr6:7390306 5'GT 7390306 Upstream 51bp
chr11 15222462 15222462 1 + C T LUAD 15222459 + 15222439 15222479 41 CTCCGCACGCTGGCCTCCATCTGCTGCGTGGAAGAGGGTGT CTCCGCACGCTGGCCTCCATCTGTTGCGTGGAAGAGGGTGT < 41bp 0.729069910595987 0.511220024763598 0.72188056 0.22079366 prediction 0.435699771664778 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15222459 chr11:15222462 synonymous SNV . 0 24 hm5C_associated_SNPs_83437 0 0 0 0 2 INSC chr11:15222370 3'AG 15222370 Downstream 93bp
chr11 15222462 15222462 1 + C T LUAD 15222459 + 15222439 15222479 41 CTCCGCACGCTGGCCTCCATCTGCTGCGTGGAAGAGGGTGT CTCCGCACGCTGGCCTCCATCTGTTGCGTGGAAGAGGGTGT < 41bp 0.729069910595987 0.511220024763598 0.72188056 0.22079366 prediction 0.435699771664778 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15222459 chr11:15222462 synonymous SNV . 0 24 hm5C_associated_SNPs_83437 0 0 0 0 2 INSC chr11:15222495 5'GT 15222495 Upstream 34bp
chr2 231134621 231134621 1 + G A SKCM 231134618 + 231134598 231134638 41 GTGTTTCTCAGAAGAGGTGCCAGGAAGCCCAGAAGCAAGGA GTGTTTCTCAGAAGAGGTGCCAGAAAGCCCAGAAGCAAGGA < 41bp 0.784954972831822 0.567105917388616 0.8181101 0.5447967 prediction 0.435698110886412 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231134618 chr2:231134621 nonsynonymous SNV 0.047 0 24 hm5C_associated_SNPs_83438 0 0 0 0 2 SP140 chr2:231134552 3'AG 231134552 Downstream 70bp
chr2 231134621 231134621 1 + G A SKCM 231134618 + 231134598 231134638 41 GTGTTTCTCAGAAGAGGTGCCAGGAAGCCCAGAAGCAAGGA GTGTTTCTCAGAAGAGGTGCCAGAAAGCCCAGAAGCAAGGA < 41bp 0.784954972831822 0.567105917388616 0.8181101 0.5447967 prediction 0.435698110886412 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231134618 chr2:231134621 nonsynonymous SNV 0.047 0 24 hm5C_associated_SNPs_83438 0 0 0 0 2 SP140 chr2:231134668 5'GT 231134668 Upstream 48bp
chr10 69961677 69961677 1 + G A LUSC 69961674 + 69961654 69961694 41 CCCGTGAGACTGGAGTGCCGCGTGATAGGCATGCCCCCACC CCCGTGAGACTGGAGTGCCGCGTAATAGGCATGCCCCCACC < 41bp 0.784273927920657 0.566426691043775 0.40234855 0.23180899 prediction 0.435694473753764 Functional Loss - MYPN ENSG00000138347 CDS Human protein_coding chr10:69961674 chr10:69961677 synonymous SNV . 0 24 hm5C_associated_SNPs_83439 0 0 0 0 2 MYPN chr10:69961586 3'AG 69961586 Downstream 92bp
chr10 69961677 69961677 1 + G A LUSC 69961674 + 69961654 69961694 41 CCCGTGAGACTGGAGTGCCGCGTGATAGGCATGCCCCCACC CCCGTGAGACTGGAGTGCCGCGTAATAGGCATGCCCCCACC < 41bp 0.784273927920657 0.566426691043775 0.40234855 0.23180899 prediction 0.435694473753764 Functional Loss - MYPN ENSG00000138347 CDS Human protein_coding chr10:69961674 chr10:69961677 synonymous SNV . 0 24 hm5C_associated_SNPs_83439 0 0 0 0 2 MYPN chr10:69961751 5'GT 69961751 Upstream 75bp
chr2 120704130 120704130 1 + C T ESCA 120704128 + 120704108 120704148 41 GAAGATGCCTGTGATTGTGTCTCGAGTAGCACCAGGAACAC GAAGATGCCTGTGATTGTGTCTTGAGTAGCACCAGGAACAC < 41bp 0.717847229619359 0.420980306898779 0.43204015 0.102608114 prediction 0.435694459238719 Functional Loss - PTPN4 ENSG00000088179 CDS Human protein_coding chr2:120704128 chr2:120704130 stopgain 0.995 1 23 hm5C_associated_SNPs_83440 0 0 1 0 2 PTPN4 chr2:120704094 3'AG 120704094 Downstream 37bp
chr2 120704130 120704130 1 + C T ESCA 120704128 + 120704108 120704148 41 GAAGATGCCTGTGATTGTGTCTCGAGTAGCACCAGGAACAC GAAGATGCCTGTGATTGTGTCTTGAGTAGCACCAGGAACAC < 41bp 0.717847229619359 0.420980306898779 0.43204015 0.102608114 prediction 0.435694459238719 Functional Loss - PTPN4 ENSG00000088179 CDS Human protein_coding chr2:120704128 chr2:120704130 stopgain 0.995 1 23 hm5C_associated_SNPs_83440 0 0 1 0 2 PTPN4 chr2:120704150 5'GT 120704150 Upstream 21bp
chr10 101286886 101286886 1 + G A rs111358122 101286883 + 101286863 101286903 41 GAGGGAGAGGAGGAGGACTGCAGGCGGAAGAGCGCGCGCGT GAGGGAGAGGAGGAGGACTGCAGACGGAAGAGCGCGCGCGT < 41bp 0.762354644175609 0.54450773031269 0.89773005 0.77368116 prediction 0.435693827725838 Functional Loss - LINC01475 ENSG00000228778 ncRNA_exonic Human lincRNA chr10:101286883 chr10:101286886 . . 0 24 hm5C_associated_SNPs_83442 0 0 0 0 1 LINC01475 chr10:101286961 5'GT 101286961 Upstream 76bp
chr2 103380846 103380846 1 + G A CESC 103380843 + 103380823 103380863 41 TACCTGTCTCCGTACCCCTTCATGAGAGGCGAGCACAACTC TACCTGTCTCCGTACCCCTTCATAAGAGGCGAGCACAACTC < 41bp 0.791231549451293 0.573392782821243 0.15718636 0.14095452 prediction 0.435677533260099 Functional Loss - TMEM182 ENSG00000170417 CDS Human protein_coding chr2:103380843 chr2:103380846 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_83448 0 0 1 0 2 TMEM182 chr2:103380788 3'AG 103380788 Downstream 59bp
chr2 103380846 103380846 1 + G A CESC 103380843 + 103380823 103380863 41 TACCTGTCTCCGTACCCCTTCATGAGAGGCGAGCACAACTC TACCTGTCTCCGTACCCCTTCATAAGAGGCGAGCACAACTC < 41bp 0.791231549451293 0.573392782821243 0.15718636 0.14095452 prediction 0.435677533260099 Functional Loss - TMEM182 ENSG00000170417 CDS Human protein_coding chr2:103380843 chr2:103380846 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_83448 0 0 1 0 2 TMEM182 chr2:103380886 5'GT 103380886 Upstream 41bp
chr19 19329800 19329800 1 + G T SARC 19329796 + 19329776 19329816 41 GGGGTCTGGGTCAGTGCAGGCTGCGCTGGCGGAGCTGGTGG GGGGTCTGGGTCAGTGCAGGCTGCTCTGGCGGAGCTGGTGG < 41bp 0.729432059022577 0.511602938210572 0.29145968 0.40916646 prediction 0.435658241624011 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19329796 chr19:19329800 synonymous SNV . 0 25 hm5C_associated_SNPs_83452 0 0 0 0 1 NCAN chr19:19329724 3'AG 19329724 Downstream 77bp
chr5 157178442 157178442 1 + G A BLCA 157178439 + 157178419 157178459 41 GTGAACTCCATCGCTGTATCCGTGAGGGGGTGAAGGTGAAT GTGAACTCCATCGCTGTATCCGTAAGGGGGTGAAGGTGAAT < 41bp 0.717826167963545 0.480119599291299 0.4350855 0.46210456 prediction 0.435652335927091 Functional Loss - LSM11 ENSG00000155858 CDS Human protein_coding chr5:157178439 chr5:157178442 nonsynonymous SNV 0.966 3 24 hm5C_associated_SNPs_83453 0 0 1 0 2 LSM11 chr5:157178398 3'AG 157178398 Downstream 45bp
chr5 157178442 157178442 1 + G A BLCA 157178439 + 157178419 157178459 41 GTGAACTCCATCGCTGTATCCGTGAGGGGGTGAAGGTGAAT GTGAACTCCATCGCTGTATCCGTAAGGGGGTGAAGGTGAAT < 41bp 0.717826167963545 0.480119599291299 0.4350855 0.46210456 prediction 0.435652335927091 Functional Loss - LSM11 ENSG00000155858 CDS Human protein_coding chr5:157178439 chr5:157178442 nonsynonymous SNV 0.966 3 24 hm5C_associated_SNPs_83453 0 0 1 0 2 LSM11 chr5:157178537 5'GT 157178537 Upstream 96bp
chr8 124992757 124992757 1 + G A SKCM 124992754 + 124992734 124992774 41 ATTAACCTGTATGGCTCGCCCAGGAACCACAGTCTGATGGA ATTAACCTGTATGGCTCGCCCAGAAACCACAGTCTGATGGA < 41bp 0.769961909891519 0.552138821334151 0.90389013 0.42301482 prediction 0.435646177114736 Functional Loss - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:124992754 chr8:124992757 synonymous SNV . 0 24 hm5C_associated_SNPs_83455 0 0 0 0 1 FER1L6 chr8:124992705 3'AG 124992705 Downstream 53bp
chr6 97489422 97489422 1 + G A BLCA 97489419 + 97489399 97489439 41 GAGCTGATGAGGTTAATTTGCACGGTGTGACCAGCCTTGGC GAGCTGATGAGGTTAATTTGCACAGTGTGACCAGCCTTGGC < 41bp 0.775765315170366 0.557945285063641 0.31346065 0.054102182 prediction 0.435640060213451 Functional Loss - KLHL32 ENSG00000186231 CDS Human protein_coding chr6:97489419 chr6:97489422 nonsynonymous SNV 0.676 4 24 hm5C_associated_SNPs_83457 0 0 0 2 2 KLHL32 chr6:97489368 3'AG 97489368 Downstream 55bp
chr6 97489422 97489422 1 + G A BLCA 97489419 + 97489399 97489439 41 GAGCTGATGAGGTTAATTTGCACGGTGTGACCAGCCTTGGC GAGCTGATGAGGTTAATTTGCACAGTGTGACCAGCCTTGGC < 41bp 0.775765315170366 0.557945285063641 0.31346065 0.054102182 prediction 0.435640060213451 Functional Loss - KLHL32 ENSG00000186231 CDS Human protein_coding chr6:97489419 chr6:97489422 nonsynonymous SNV 0.676 4 24 hm5C_associated_SNPs_83457 0 0 0 2 2 KLHL32 chr6:97489475 5'GT 97489475 Upstream 54bp
chr19 5151356 5151356 1 + C T READ 5151354 + 5151334 5151374 41 GCTCTCCCGCAGTCACTGAGCACGGGGGCACCGCAGGAGCC GCTCTCCCGCAGTCACTGAGCATGGGGGCACCGCAGGAGCC < 41bp 0.717818564370001 0.473870540614354 0.6608026 0.6587772 prediction 0.435637128740002 Functional Loss - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5151354 chr19:5151356 nonsynonymous SNV 0.589 3 23 hm5C_associated_SNPs_83460 0 0 1 0 1 KDM4B chr19:5151346 3'AG 5151346 Downstream 11bp
chr11 124745900 124745900 1 + A C rs181453003 124745896 + 124745876 124745916 41 CTTTCACCTCAATCGATCTGCAGCAGGCTGGGCACGCTCCG CTTTCACCTCAATCGATCTGCAGCCGGCTGGGCACGCTCCG < 41bp 0.717813078411709 0.299135860332865 0.21159706 0.17305982 prediction 0.435626156823418 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124745896 chr11:124745900 synonymous SNV . 0 25 hm5C_associated_SNPs_83464 0 0 0 0 1 ROBO3 chr11:124745850 3'AG 124745850 Downstream 51bp
chr14 52460477 52460477 1 + G A UCEC 52460474 + 52460454 52460494 41 TTAACTGTCCTTTCAAGATTCAAGATCGACAAGAAGCTATT TTAACTGTCCTTTCAAGATTCAAAATCGACAAGAAGCTATT < 41bp 0.755571050624768 0.537761030924706 0.3518031 0.153283 prediction 0.435620039400124 Functional Loss - C14orf166 ENSG00000087302 CDS Human protein_coding chr14:52460474 chr14:52460477 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_83465 0 0 1 0 2 C14orf166 chr14:52460441 3'AG 52460441 Downstream 37bp
chr14 52460477 52460477 1 + G A UCEC 52460474 + 52460454 52460494 41 TTAACTGTCCTTTCAAGATTCAAGATCGACAAGAAGCTATT TTAACTGTCCTTTCAAGATTCAAAATCGACAAGAAGCTATT < 41bp 0.755571050624768 0.537761030924706 0.3518031 0.153283 prediction 0.435620039400124 Functional Loss - C14orf166 ENSG00000087302 CDS Human protein_coding chr14:52460474 chr14:52460477 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_83465 0 0 1 0 2 C14orf166 chr14:52460540 5'GT 52460540 Upstream 64bp
chr19 38867030 38867030 1 + C T UCEC 38867027 + 38867007 38867047 41 TCGGGGCCCAATGGAGCATCCTACGCAAGGACATCCCCTCC TCGGGGCCCAATGGAGCATCCTATGCAAGGACATCCCCTCC < 41bp 0.717807702164524 0.497205328539241 0.115205765 0.21265537 prediction 0.435615404329048 Functional Loss - PSMD8 ENSG00000099341 CDS Human protein_coding chr19:38867027 chr19:38867030 nonsynonymous SNV 0.969 0 24 hm5C_associated_SNPs_83466 0 0 1 0 2 PSMD8 chr19:38866992 3'AG 38866992 Downstream 39bp
chr19 38867030 38867030 1 + C T UCEC 38867027 + 38867007 38867047 41 TCGGGGCCCAATGGAGCATCCTACGCAAGGACATCCCCTCC TCGGGGCCCAATGGAGCATCCTATGCAAGGACATCCCCTCC < 41bp 0.717807702164524 0.497205328539241 0.115205765 0.21265537 prediction 0.435615404329048 Functional Loss - PSMD8 ENSG00000099341 CDS Human protein_coding chr19:38867027 chr19:38867030 nonsynonymous SNV 0.969 0 24 hm5C_associated_SNPs_83466 0 0 1 0 2 PSMD8 chr19:38867094 5'GT 38867094 Upstream 65bp
chr12 53452181 53452181 1 + G T LUAD 53452178 + 53452158 53452198 41 AGTTCCACACCTGCACCATCCACGGACCACAGCTCACTTTC AGTTCCACACCTGCACCATCCACTGACCACAGCTCACTTTC < 41bp 0.717807620164013 0.322409169631514 0.6588302 0.09344885 prediction 0.435615240328025 Functional Loss - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53452178 chr12:53452181 stopgain 0.958 0 24 hm5C_associated_SNPs_83467 0 0 0 0 1 TNS2 chr12:53452229 5'GT 53452229 Upstream 49bp
chr19 38308307 38308307 1 + G A rs555433123 38308304 + 38308284 38308324 41 AGGCGCGGGCCGGGCTCTCTCCCGCCTCCTCAGGCCCGGGG AGGCGCGGGCCGGGCTCTCTCCCACCTCCTCAGGCCCGGGG < 41bp 0.780827679882317 0.563021610434672 0.6931253 0.35884106 prediction 0.435612138895289 Functional Loss - LOC644554 ENSG00000267640 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:38308304 chr19:38308307 . . 0 24 hm5C_associated_SNPs_83470 0 0 0 0 1 LOC644554 chr19:38308341 5'GT 38308341 Upstream 35bp
chrX 48403286 48403286 1 + G C UCEC 48403282 + 48403262 48403302 41 AGAACTTTGGCATCAGCTACCTGGGCCGGGACCGGCTAGGA AGAACTTTGGCATCAGCTACCTGGCCCGGGACCGGCTAGGA < 41bp 0.717803233824636 0.41823645605334 0.768685 0.10679552 prediction 0.435606467649272 Functional Loss - TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48403282 chrX:48403286 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_83474 0 0 1 0 1 TBC1D25 chrX:48403257 3'AG 48403257 Downstream 30bp
chr3 133419878 133419878 1 + G A UCEC 133419875 + 133419855 133419895 41 CTGGGATATGAGTATTTTTCCGCGACTCAGGATCCAAAAAG CTGGGATATGAGTATTTTTCCGCAACTCAGGATCCAAAAAG < 41bp 0.71779889708556 0.489496485929249 0.8842387 0.60422236 prediction 0.435597794171119 Functional Loss - TOPBP1;TF ENSG00000242337 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:133419875 chr3:133419878 . . 0 24 hm5C_associated_SNPs_83476 0 0 0 0 1 TOPBP1;TF chr3:133419897 5'GT 133419897 Upstream 20bp
chr20 13140735 13140735 1 + C T HNSC 13140733 + 13140713 13140753 41 TCCCCTCGCAGAAGCTCGGGCTCGGTTTTGTGTTTCAGCGG TCCCCTCGCAGAAGCTCGGGCTTGGTTTTGTGTTTCAGCGG < 41bp 0.717794296406055 0.435284086757474 0.15943736 0.18278989 prediction 0.43558859281211 Functional Loss - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13140733 chr20:13140735 nonsynonymous SNV 0.971 5 23 hm5C_associated_SNPs_83480 0 0 0 0 2 SPTLC3 chr20:13140650 3'AG 13140650 Downstream 86bp
chr20 13140735 13140735 1 + C T HNSC 13140733 + 13140713 13140753 41 TCCCCTCGCAGAAGCTCGGGCTCGGTTTTGTGTTTCAGCGG TCCCCTCGCAGAAGCTCGGGCTTGGTTTTGTGTTTCAGCGG < 41bp 0.717794296406055 0.435284086757474 0.15943736 0.18278989 prediction 0.43558859281211 Functional Loss - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13140733 chr20:13140735 nonsynonymous SNV 0.971 5 23 hm5C_associated_SNPs_83480 0 0 0 0 2 SPTLC3 chr20:13140779 5'GT 13140779 Upstream 45bp
chr20 13140736 13140736 1 + G A STAD 13140733 + 13140713 13140753 41 TCCCCTCGCAGAAGCTCGGGCTCGGTTTTGTGTTTCAGCGG TCCCCTCGCAGAAGCTCGGGCTCAGTTTTGTGTTTCAGCGG < 41bp 0.717794296406055 0.471691685700104 0.15943736 0.18160802 prediction 0.43558859281211 Functional Loss - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13140733 chr20:13140736 nonsynonymous SNV 0.971 5 24 hm5C_associated_SNPs_83481 0 0 0 0 2 SPTLC3 chr20:13140650 3'AG 13140650 Downstream 87bp
chr20 13140736 13140736 1 + G A STAD 13140733 + 13140713 13140753 41 TCCCCTCGCAGAAGCTCGGGCTCGGTTTTGTGTTTCAGCGG TCCCCTCGCAGAAGCTCGGGCTCAGTTTTGTGTTTCAGCGG < 41bp 0.717794296406055 0.471691685700104 0.15943736 0.18160802 prediction 0.43558859281211 Functional Loss - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13140733 chr20:13140736 nonsynonymous SNV 0.971 5 24 hm5C_associated_SNPs_83481 0 0 0 0 2 SPTLC3 chr20:13140779 5'GT 13140779 Upstream 44bp
chr7 150761314 150761314 1 + G A rs2303929 150761311 + 150761291 150761331 41 AGAGCCAGAGAGCTTGGGCCCTGGGACGCCTGGGTTCCCCG AGAGCCAGAGAGCTTGGGCCCTGAGACGCCTGGGTTCCCCG < 41bp 0.717793670651355 0.465721975675839 0.5901258 0.2625252 prediction 0.435587341302711 Functional Loss - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150761311 chr7:150761314 nonsynonymous SNV 0.043 1 24 hm5C_associated_SNPs_83482 0 1 1 0 1 SLC4A2 chr7:150761289 3'AG 150761289 Downstream 26bp
chr10 1061784 1061784 1 + G C ESCA 1061780 + 1061760 1061800 41 CTCCCCCGTCCTCTGTGGCCCGGAGTGGGAGTTGCTCTCGA CTCCCCCGTCCTCTGTGGCCCGGACTGGGAGTTGCTCTCGA < 41bp 0.717790818003591 0.429230624914287 0.8388762 0.14934745 prediction 0.435581636007182 Functional Loss - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1061780 chr10:1061784 nonsynonymous SNV 0.017 1 25 hm5C_associated_SNPs_83485 0 0 1 0 2 GTPBP4 chr10:1061693 3'AG 1061693 Downstream 92bp
chr10 1061784 1061784 1 + G C ESCA 1061780 + 1061760 1061800 41 CTCCCCCGTCCTCTGTGGCCCGGAGTGGGAGTTGCTCTCGA CTCCCCCGTCCTCTGTGGCCCGGACTGGGAGTTGCTCTCGA < 41bp 0.717790818003591 0.429230624914287 0.8388762 0.14934745 prediction 0.435581636007182 Functional Loss - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1061780 chr10:1061784 nonsynonymous SNV 0.017 1 25 hm5C_associated_SNPs_83485 0 0 1 0 2 GTPBP4 chr10:1061836 5'GT 1061836 Upstream 53bp
chr14 74665653 74665653 1 + C T LUAD 74665651 + 74665631 74665671 41 AGATGACACGGGGGAAATTCCTCAATATTCTAGAGAAGCCC AGATGACACGGGGGAAATTCCTTAATATTCTAGAGAAGCCC < 41bp 0.717789993577756 0.433189997359074 0.29831845 0.060721874 prediction 0.435579987155511 Functional Loss - LIN52 ENSG00000205659 CDS Human protein_coding chr14:74665651 chr14:74665653 synonymous SNV . 0 23 hm5C_associated_SNPs_83487 0 0 1 1 1 LIN52 chr14:74665625 3'AG 74665625 Downstream 29bp
chr1 1957004 1957004 1 + G A LUSC 1957001 + 1956981 1957021 41 CACCAGAGCTGGCGGGACAGCAGGCTCTCCTACAACCACAC CACCAGAGCTGGCGGGACAGCAGACTCTCCTACAACCACAC < 41bp 0.717788926429253 0.473811715839062 0.882143 0.84495175 prediction 0.435577852858506 Functional Loss - GABRD ENSG00000187730 CDS Human protein_coding chr1:1957001 chr1:1957004 synonymous SNV . 0 24 hm5C_associated_SNPs_83488 0 0 1 0 1 GABRD chr1:1956957 3'AG 1956957 Downstream 48bp
chr20 31760818 31760818 1 + G A LUAD 31760815 + 31760795 31760835 41 AACTGGCCAAGCAGAAGGCCCAGGAAGCTGAGAAATTGCTG AACTGGCCAAGCAGAAGGCCCAGAAAGCTGAGAAATTGCTG < 41bp 0.792730978508819 0.574942596409065 0.3968546 0.25908464 prediction 0.435576764199508 Functional Loss - BPIFA2 ENSG00000131050 CDS Human protein_coding chr20:31760815 chr20:31760818 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_83489 0 0 0 0 2 BPIFA2 chr20:31760738 3'AG 31760738 Downstream 81bp
chr20 31760818 31760818 1 + G A LUAD 31760815 + 31760795 31760835 41 AACTGGCCAAGCAGAAGGCCCAGGAAGCTGAGAAATTGCTG AACTGGCCAAGCAGAAGGCCCAGAAAGCTGAGAAATTGCTG < 41bp 0.792730978508819 0.574942596409065 0.3968546 0.25908464 prediction 0.435576764199508 Functional Loss - BPIFA2 ENSG00000131050 CDS Human protein_coding chr20:31760815 chr20:31760818 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_83489 0 0 0 0 2 BPIFA2 chr20:31760882 5'GT 31760882 Upstream 65bp
chr5 32739001 32739001 1 + C T COAD 32738999 + 32738979 32739019 41 CATGGAAGAGAGGAGACAAACACGACTTTGAAGCTAAGCAA CATGGAAGAGAGGAGACAAACATGACTTTGAAGCTAAGCAA < 41bp 0.862860263759867 0.645072893664836 0.14653078 0.31820053 prediction 0.435574740190062 Functional Loss - NPR3 ENSG00000113389 CDS Human protein_coding chr5:32738999 chr5:32739001 synonymous SNV . 0 23 hm5C_associated_SNPs_83490 0 0 1 0 1 NPR3 chr5:32738970 3'AG 32738970 Downstream 32bp
chr12 56428453 56428453 1 + G A BLCA 56428450 + 56428430 56428470 41 AGTTGGTGGCACACCACAGCCTAGAGCCTGGCTTTGGAAGT AGTTGGTGGCACACCACAGCCTAAAGCCTGGCTTTGGAAGT < 41bp 0.79307606879532 0.575290800933262 0.2034564 0.110749304 prediction 0.435570535724114 Functional Loss - IKZF4 ENSG00000123411 CDS Human protein_coding chr12:56428450 chr12:56428453 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_83491 0 0 0 0 1 IKZF4 chr12:56428355 3'AG 56428355 Downstream 99bp
chr4 1374737 1374737 1 + C T STAD 1374735 + 1374715 1374755 41 GCTCGACCCGGAAGACAGGGCTCGTGAGCAGCGGCGGCAGC GCTCGACCCGGAAGACAGGGCTTGTGAGCAGCGGCGGCAGC < 41bp 0.717784623398338 0.455538060216308 0.3100797 0.2875424 prediction 0.435569246796676 Functional Loss - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1374735 chr4:1374737 nonsynonymous SNV 0.008 3 23 hm5C_associated_SNPs_83492 0 0 1 0 2 UVSSA chr4:1374668 3'AG 1374668 Downstream 70bp
chr4 1374737 1374737 1 + C T STAD 1374735 + 1374715 1374755 41 GCTCGACCCGGAAGACAGGGCTCGTGAGCAGCGGCGGCAGC GCTCGACCCGGAAGACAGGGCTTGTGAGCAGCGGCGGCAGC < 41bp 0.717784623398338 0.455538060216308 0.3100797 0.2875424 prediction 0.435569246796676 Functional Loss - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1374735 chr4:1374737 nonsynonymous SNV 0.008 3 23 hm5C_associated_SNPs_83492 0 0 1 0 2 UVSSA chr4:1374776 5'GT 1374776 Upstream 40bp
chr15 66604071 66604071 1 + G A SKCM 66604068 + 66604048 66604088 41 TTTATTAAATACAGAATTACCTGGACAATTTCTGGCCTGAT TTTATTAAATACAGAATTACCTGAACAATTTCTGGCCTGAT < 41bp 0.76389423992949 0.546112208027209 0.2329311 0.10808402 prediction 0.435564063804563 Functional Loss - DIS3L ENSG00000166938 CDS Human protein_coding chr15:66604068 chr15:66604071 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_83493 0 0 0 0 1 DIS3L chr15:66604062 3'AG 66604062 Downstream 10bp
chr10 71266622 71266622 1 + G A UCEC 71266619 + 71266599 71266639 41 GCTGACGCTGCTGTACATCACCCGGGTGGAGGACATCATCA GCTGACGCTGCTGTACATCACCCAGGTGGAGGACATCATCA < 41bp 0.792213881323071 0.574432174353832 0.31329817 0.20218101 prediction 0.435563413938478 Functional Loss - TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71266619 chr10:71266622 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_83494 0 0 1 0 1 TSPAN15 chr10:71266585 3'AG 71266585 Downstream 38bp
chr12 109541266 109541266 1 + G A UCEC 109541263 + 109541243 109541283 41 CTCCTTCTCAACGCTGTCCTCACGGTTCGTGCCCATCAAGC CTCCTTCTCAACGCTGTCCTCACAGTTCGTGCCCATCAAGC < 41bp 0.804091750513976 0.58631124321748 0.075023234 0.031193912 prediction 0.435561014592993 Functional Loss - UNG ENSG00000076248 CDS Human protein_coding chr12:109541263 chr12:109541266 synonymous SNV . 0 24 hm5C_associated_SNPs_83495 0 0 1 0 1 UNG chr12:109541238 3'AG 109541238 Downstream 29bp
chr3 138669144 138669144 1 + G A UCEC 138669141 + 138669121 138669161 41 CAACAGCGGCAGAAGCCGCCCGCGCCTCGGGCTTCCGGCGG CAACAGCGGCAGAAGCCGCCCGCACCTCGGGCTTCCGGCGG < 41bp 0.802272151410558 0.584492503131432 0.36636525 0.17451629 prediction 0.435559296558251 Functional Loss - FOXL2NB ENSG00000206262 CDS Human protein_coding chr3:138669141 chr3:138669144 synonymous SNV . 0 24 hm5C_associated_SNPs_83496 0 0 0 0 1 FOXL2NB chr3:138669107 3'AG 138669107 Downstream 38bp
chr17 7983194 7983194 1 + G T LUAD 7983191 + 7983171 7983211 41 CGTGCAGCGGCGGATCAGGCCGGGGTTGACGCCGTTGAGGT CGTGCAGCGGCGGATCAGGCCGGTGTTGACGCCGTTGAGGT < 41bp 0.931019678708595 0.713240178073661 0.9174913 0.88781875 prediction 0.435559001269866 Functional Loss - ALOX12B ENSG00000179477 CDS Human protein_coding chr17:7983191 chr17:7983194 nonsynonymous SNV 0.986 5 24 hm5C_associated_SNPs_83497 0 0 0 0 1 ALOX12B chr17:7983123 3'AG 7983123 Downstream 72bp
chr4 2065566 2065566 1 + G A rs572595075 2065563 + 2065543 2065583 41 CGGGCCCACGAGGAGGACAACACGGTGGAGCTGCTGCGGAT CGGGCCCACGAGGAGGACAACACAGTGGAGCTGCTGCGGAT < 41bp 0.781847569918424 0.564070495428949 0.8338767 0.53843254 prediction 0.435554148978951 Functional Loss - NAT8L ENSG00000185818 CDS Human protein_coding chr4:2065563 chr4:2065566 synonymous SNV . 0 24 hm5C_associated_SNPs_83499 0 0 1 0 1 NAT8L chr4:2065487 3'AG 2065487 Downstream 80bp
chr10 135165803 135165803 1 + C T UCEC 135165801 + 135165781 135165821 41 CCCTGGGCCATGTCCTGAGTCCCGAGCCCGACCATGACAGC CCCTGGGCCATGTCCTGAGTCCTGAGCCCGACCATGACAGC < 41bp 0.822126007014841 0.604349646088951 0.1589399 0.18632871 prediction 0.435552721851781 Functional Loss - PRAP1 ENSG00000165828;ENSG00000198546 CDS Human other chr10:135165801 chr10:135165803 synonymous SNV . 0 23 hm5C_associated_SNPs_83500 0 0 1 0 1 PRAP1 chr10:135165751 3'AG 135165751 Downstream 53bp
chr14 76012833 76012833 1 + C T ESCA 76012831 + 76012811 76012851 41 GAAGACCTGGAGAAACAGAACGCGGCTCTACGCAAGGAGAT GAAGACCTGGAGAAACAGAACGTGGCTCTACGCAAGGAGAT < 41bp 0.814471917063495 0.596698089751525 0.20621228 0.19942859 prediction 0.435547654623939 Functional Loss - BATF ENSG00000156127 CDS Human protein_coding chr14:76012831 chr14:76012833 nonsynonymous SNV 0.992 3 23 hm5C_associated_SNPs_83501 0 0 0 0 1 BATF chr14:76012805 3'AG 76012805 Downstream 29bp
chr17 76087633 76087633 1 + C T SKCM 76087630 + 76087610 76087650 41 CCCCAGTGGACGCACCCCAACTCCATGGATAACTTGCCCAG CCCCAGTGGACGCACCCCAACTCTATGGATAACTTGCCCAG < 41bp 0.769006252192744 0.551232756080079 0.9485063 0.9229587 prediction 0.435546992225329 Functional Loss - TNRC6C ENSG00000078687 CDS Human protein_coding chr17:76087630 chr17:76087633 synonymous SNV . 0 24 hm5C_associated_SNPs_83502 0 0 1 0 1 TNRC6C chr17:76087688 5'GT 76087688 Upstream 56bp
chr21 43962568 43962568 1 + G A LUSC 43962565 + 43962545 43962585 41 GGCCCAGCGTCGTCACCTGCCTCGGCAACTGGTTTGGAAAA GGCCCAGCGTCGTCACCTGCCTCAGCAACTGGTTTGGAAAA < 41bp 0.7177660583009 0.466526128417519 0.08870426 0.06967977 prediction 0.4355321166018 Functional Loss - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43962565 chr21:43962568 nonsynonymous SNV 0.961 0 24 hm5C_associated_SNPs_83507 0 0 0 0 2 SLC37A1 chr21:43962514 3'AG 43962514 Downstream 55bp
chr21 43962568 43962568 1 + G A LUSC 43962565 + 43962545 43962585 41 GGCCCAGCGTCGTCACCTGCCTCGGCAACTGGTTTGGAAAA GGCCCAGCGTCGTCACCTGCCTCAGCAACTGGTTTGGAAAA < 41bp 0.7177660583009 0.466526128417519 0.08870426 0.06967977 prediction 0.4355321166018 Functional Loss - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43962565 chr21:43962568 nonsynonymous SNV 0.961 0 24 hm5C_associated_SNPs_83507 0 0 0 0 2 SLC37A1 chr21:43962590 5'GT 43962590 Upstream 23bp
chr16 30505584 30505584 1 + C T CESC 30505582 + 30505562 30505602 41 CAAAAGACTTCGTTGCTGGCCTCGGGAGCCCCTCGATACCA CAAAAGACTTCGTTGCTGGCCTTGGGAGCCCCTCGATACCA < 41bp 0.717764969236503 0.436885314272936 0.0842374 0.07620436 prediction 0.435529938473006 Functional Loss - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30505582 chr16:30505584 nonsynonymous SNV 0.035 0 23 hm5C_associated_SNPs_83508 0 0 0 0 1 ITGAL chr16:30505533 3'AG 30505533 Downstream 52bp
chr7 150417424 150417424 1 + G A BLCA 150417421 + 150417401 150417441 41 CTGCTACCTGCTCTCGGCCCCCGGACCCCACGCGCTGCTCC CTGCTACCTGCTCTCGGCCCCCGAACCCCACGCGCTGCTCC < 41bp 0.717763260618787 0.467360193231321 0.25430852 0.042784423 prediction 0.435526521237574 Functional Loss - GIMAP1;GIMAP1-GIMAP5 ENSG00000213203 CDS Human protein_coding chr7:150417421 chr7:150417424 nonsynonymous SNV 0.029 3 24 hm5C_associated_SNPs_83510 0 0 0 0 1 GIMAP1;GIMAP1-GIMAP5 chr7:150417494 5'GT 150417494 Upstream 71bp
chr10 114186049 114186049 1 + G C BLCA 114186045 + 114186025 114186065 41 GTAGGAGTGGTGGTTCCTGACACAGATGTACTTCCCTCATT GTAGGAGTGGTGGTTCCTGACACACATGTACTTCCCTCATT < 41bp 0.71776009207372 0.417221880842076 0.07421252 0.03848067 prediction 0.435520184147441 Functional Loss - ACSL5 ENSG00000197142 CDS Human protein_coding chr10:114186045 chr10:114186049 nonsynonymous SNV 0.454 2 25 hm5C_associated_SNPs_83513 0 0 1 0 2 ACSL5 chr10:114186016 3'AG 114186016 Downstream 34bp
chr10 114186049 114186049 1 + G C BLCA 114186045 + 114186025 114186065 41 GTAGGAGTGGTGGTTCCTGACACAGATGTACTTCCCTCATT GTAGGAGTGGTGGTTCCTGACACACATGTACTTCCCTCATT < 41bp 0.71776009207372 0.417221880842076 0.07421252 0.03848067 prediction 0.435520184147441 Functional Loss - ACSL5 ENSG00000197142 CDS Human protein_coding chr10:114186045 chr10:114186049 nonsynonymous SNV 0.454 2 25 hm5C_associated_SNPs_83513 0 0 1 0 2 ACSL5 chr10:114186117 5'GT 114186117 Upstream 69bp
chr16 84695201 84695201 1 + C T UCEC 84695199 + 84695179 84695219 41 TGCAGGTTCACGTACGGCCACGCGGGCACCATCTACAAAGA TGCAGGTTCACGTACGGCCACGTGGGCACCATCTACAAAGA < 41bp 0.809660650870762 0.591901351463659 0.3280663 0.32572657 prediction 0.435518598814206 Functional Loss - KLHL36 ENSG00000135686 CDS Human protein_coding chr16:84695199 chr16:84695201 nonsynonymous SNV 0.952 3 23 hm5C_associated_SNPs_83514 0 0 0 0 1 KLHL36 chr16:84695184 3'AG 84695184 Downstream 18bp
chr1 160105036 160105036 1 + G A COAD 160105033 + 160105013 160105053 41 CCACACAGAGATCGTCTTTGCTCGAACGTCTCCCCAGCAGA CCACACAGAGATCGTCTTTGCTCAAACGTCTCCCCAGCAGA < 41bp 0.799244565408994 0.581489661433852 0.7252534 0.416184 prediction 0.435509807950284 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160105033 chr1:160105036 nonsynonymous SNV 0.389 5 24 hm5C_associated_SNPs_83517 1 0 0 0 1 ATP1A2 chr1:160105085 5'GT 160105085 Upstream 50bp
chr11 68377463 68377463 1 + A C BLCA 68377462 + 68377442 68377482 41 GAGGCGAAGTGCGCGGCGCCCAGGCCTCCCAGCAGCAGTCC GAGGCGAAGTGCGCGGCGCCCCGGCCTCCCAGCAGCAGTCC < 41bp 0.802074348687031 0.584319982533514 0.86533284 0.81770825 prediction 0.435508732307035 Functional Loss - PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68377462 chr11:68377463 synonymous SNV . 0 22 hm5C_associated_SNPs_83518 0 0 1 0 2 PPP6R3 chr11:68377372 3'AG 68377372 Downstream 92bp
chr11 68377463 68377463 1 + A C BLCA 68377462 + 68377442 68377482 41 GAGGCGAAGTGCGCGGCGCCCAGGCCTCCCAGCAGCAGTCC GAGGCGAAGTGCGCGGCGCCCCGGCCTCCCAGCAGCAGTCC < 41bp 0.802074348687031 0.584319982533514 0.86533284 0.81770825 prediction 0.435508732307035 Functional Loss - PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68377462 chr11:68377463 synonymous SNV . 0 22 hm5C_associated_SNPs_83518 0 0 1 0 2 PPP6R3 chr11:68377491 5'GT 68377491 Upstream 29bp
chr5 95192641 95192641 1 + G A UCEC 95192638 + 95192618 95192658 41 CCCTGTCTGGAAAGTTTTTGCCAGAGGGCAAAAGACTGCAA CCCTGTCTGGAAAGTTTTTGCCAAAGGGCAAAAGACTGCAA < 41bp 0.717753628799295 0.479208838841209 0.869002 0.42821872 prediction 0.435507257598591 Functional Loss - LINC01554 ENSG00000236882 CDS Human lincRNA chr5:95192638 chr5:95192641 synonymous SNV . 0 24 hm5C_associated_SNPs_83520 0 0 0 0 2 LINC01554 chr5:95192582 3'AG 95192582 Downstream 60bp
chr5 95192641 95192641 1 + G A UCEC 95192638 + 95192618 95192658 41 CCCTGTCTGGAAAGTTTTTGCCAGAGGGCAAAAGACTGCAA CCCTGTCTGGAAAGTTTTTGCCAAAGGGCAAAAGACTGCAA < 41bp 0.717753628799295 0.479208838841209 0.869002 0.42821872 prediction 0.435507257598591 Functional Loss - LINC01554 ENSG00000236882 CDS Human lincRNA chr5:95192638 chr5:95192641 synonymous SNV . 0 24 hm5C_associated_SNPs_83520 0 0 0 0 2 LINC01554 chr5:95192685 5'GT 95192685 Upstream 45bp
chr17 18284928 18284928 1 + T C STAD 18284927 + 18284907 18284947 41 TTCTTGACAGCATCGAGCAGCTGCACGAGCGGGTGACCCAG TTCTTGACAGCATCGAGCAGCCGCACGAGCGGGTGACCCAG < 41bp 0.717753210309393 0.465536575897532 0.7762916 0.28172505 prediction 0.435506420618785 Functional Loss - EVPLL ENSG00000214860 CDS Human protein_coding chr17:18284927 chr17:18284928 nonsynonymous SNV 0.966 3 22 hm5C_associated_SNPs_83521 0 0 0 0 1 EVPLL chr17:18284917 3'AG 18284917 Downstream 12bp
chr10 71849867 71849867 1 + G T OV 71849865 + 71849845 71849885 41 GCGAGGGACAACAAGAAGGCCCGGATAGCCCCGAGACACAT GCGAGGGACAACAAGAAGGCCCTGATAGCCCCGAGACACAT < 41bp 0.717750793765304 0.364605893627911 0.13081706 0.10473552 prediction 0.435501587530609 Functional Loss - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71849865 chr10:71849867 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_83523 0 0 0 0 2 H2AFY2 chr10:71849816 3'AG 71849816 Downstream 52bp
chr10 71849867 71849867 1 + G T OV 71849865 + 71849845 71849885 41 GCGAGGGACAACAAGAAGGCCCGGATAGCCCCGAGACACAT GCGAGGGACAACAAGAAGGCCCTGATAGCCCCGAGACACAT < 41bp 0.717750793765304 0.364605893627911 0.13081706 0.10473552 prediction 0.435501587530609 Functional Loss - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71849865 chr10:71849867 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_83523 0 0 0 0 2 H2AFY2 chr10:71849922 5'GT 71849922 Upstream 56bp
chr8 67417763 67417763 1 + G A rs61736276 67417760 + 67417740 67417780 41 CGGCCAAAGCCTCTGCCAGACCCGGTACGTGAGTCCCGGCC CGGCCAAAGCCTCTGCCAGACCCAGTACGTGAGTCCCGGCC < 41bp 0.773171910006623 0.555422118198428 0.23185301 0.23635313 prediction 0.43549958361639 Functional Loss - C8orf46 ENSG00000169085 CDS Human protein_coding chr8:67417760 chr8:67417763 nonsynonymous SNV 0.039 0 24 hm5C_associated_SNPs_83524 0 0 0 0 1 C8orf46 chr8:67417763 5'GT 67417763 Upstream 1bp
chr7 100383669 100383669 1 + G A rs545951012 100383666 + 100383646 100383686 41 TGCACGGAGAAGTGTGTCTGCACGGGAGGAGCCATTCAGTG TGCACGGAGAAGTGTGTCTGCACAGGAGGAGCCATTCAGTG < 41bp 0.725893045092645 0.508144689317306 0.6548094 0.5992671 prediction 0.435496711550677 Functional Loss - ZAN ENSG00000146839 CDS Human protein_coding chr7:100383666 chr7:100383669 synonymous SNV . 0 24 hm5C_associated_SNPs_83525 0 0 0 0 2 ZAN chr7:100383619 3'AG 100383619 Downstream 51bp
chr7 100383669 100383669 1 + G A rs545951012 100383666 + 100383646 100383686 41 TGCACGGAGAAGTGTGTCTGCACGGGAGGAGCCATTCAGTG TGCACGGAGAAGTGTGTCTGCACAGGAGGAGCCATTCAGTG < 41bp 0.725893045092645 0.508144689317306 0.6548094 0.5992671 prediction 0.435496711550677 Functional Loss - ZAN ENSG00000146839 CDS Human protein_coding chr7:100383666 chr7:100383669 synonymous SNV . 0 24 hm5C_associated_SNPs_83525 0 0 0 0 2 ZAN chr7:100383763 5'GT 100383763 Upstream 95bp
chr20 36488339 36488339 1 + C T STAD 36488336 + 36488316 36488356 41 GGAGAGATCATCGACAATGACACCGAGGAGGAGTTCTACCT GGAGAGATCATCGACAATGACACTGAGGAGGAGTTCTACCT < 41bp 0.732510562379683 0.514763654090473 0.25261003 0.2355642 prediction 0.435493816578421 Functional Loss - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488336 chr20:36488339 synonymous SNV . 0 24 hm5C_associated_SNPs_83527 0 0 1 6 2 CTNNBL1 chr20:36488301 3'AG 36488301 Downstream 39bp
chr20 36488339 36488339 1 + C T STAD 36488336 + 36488316 36488356 41 GGAGAGATCATCGACAATGACACCGAGGAGGAGTTCTACCT GGAGAGATCATCGACAATGACACTGAGGAGGAGTTCTACCT < 41bp 0.732510562379683 0.514763654090473 0.25261003 0.2355642 prediction 0.435493816578421 Functional Loss - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488336 chr20:36488339 synonymous SNV . 0 24 hm5C_associated_SNPs_83527 0 0 1 6 2 CTNNBL1 chr20:36488438 5'GT 36488438 Upstream 100bp
chr1 22970642 22970642 1 + C T rs15940 22970640 + 22970620 22970660 41 TCCCAGGGATGCCCGGCCTGCCCGGGGCACCAGGGAAGGAT TCCCAGGGATGCCCGGCCTGCCTGGGGCACCAGGGAAGGAT < 41bp 0.77979487649369 0.562050916038605 0.32652062 0.3033542 prediction 0.43548792091017 Functional Loss - C1QC ENSG00000159189 CDS Human protein_coding chr1:22970640 chr1:22970642 synonymous SNV . 0 23 hm5C_associated_SNPs_83528 0 0 0 0 1 C1QC chr1:22970697 5'GT 22970697 Upstream 56bp
chr14 23946430 23946430 1 + G A BLCA 23946427 + 23946407 23946447 41 AGGATTAACTATGAGGAGAGCATGATGGTGCGTTTGAGCGT AGGATTAACTATGAGGAGAGCATAATGGTGCGTTTGAGCGT < 41bp 0.717741927390516 0.477948322294479 0.11976862 0.107463986 prediction 0.435483854781033 Functional Loss - NGDN ENSG00000129460 CDS Human protein_coding chr14:23946427 chr14:23946430 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_83531 0 0 1 1 1 NGDN chr14:23946409 3'AG 23946409 Downstream 22bp
chr19 42819206 42819206 1 + G T LUSC 42819203 + 42819183 42819223 41 CAATGGCAAGTCCTTCTGGACACGACACTTCTCCGCTGATG CAATGGCAAGTCCTTCTGGACACTACACTTCTCCGCTGATG < 41bp 0.717741852255617 0.317753760811586 0.07101816 0.056841195 prediction 0.435483704511233 Functional Loss - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42819203 chr19:42819206 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_83532 0 0 0 0 1 TMEM145 chr19:42819229 5'GT 42819229 Upstream 24bp
chr13 113510353 113510353 1 + G T LUAD 113510351 + 113510331 113510371 41 TTCCTGGAAATCTGCCGGAGCTGCAGCGCGGTGCTCTGCTG TTCCTGGAAATCTGCCGGAGCTTCAGCGCGGTGCTCTGCTG < 41bp 0.717740231606546 0.374485569414824 0.6752198 0.5459418 prediction 0.435480463213092 Functional Loss - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113510351 chr13:113510353 nonsynonymous SNV 0.979 5 23 hm5C_associated_SNPs_83534 0 0 1 0 1 ATP11A chr13:113510399 5'GT 113510399 Upstream 47bp
chr15 74572330 74572330 1 + G T UCEC 74572326 + 74572306 74572346 41 GTCCAAGCCTGGGGGACCCCCAGAGCAGCCCCTGTGGAATC GTCCAAGCCTGGGGGACCCCCAGATCAGCCCCTGTGGAATC < 41bp 0.717739123909591 0.497741689101156 0.8961507 0.6882331 prediction 0.435478247819182 Functional Loss - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74572326 chr15:74572330 nonsynonymous SNV 0.924 2 25 hm5C_associated_SNPs_83535 0 0 0 0 1 CCDC33 chr15:74572304 3'AG 74572304 Downstream 27bp
chr19 42222066 42222066 1 + C T SKCM 42222063 + 42222043 42222083 41 CCAGATGGCCCAGACGACCCCACCATTTCCCCCTCATACAC CCAGATGGCCCAGACGACCCCACTATTTCCCCCTCATACAC < 41bp 0.73061635103904 0.512877915758965 0.02210033 0.029283226 prediction 0.435476870560151 Functional Loss - CEACAM5 ENSG00000105388 CDS Human protein_coding chr19:42222063 chr19:42222066 synonymous SNV . 0 24 hm5C_associated_SNPs_83537 0 0 0 0 1 CEACAM5 chr19:42222047 3'AG 42222047 Downstream 20bp
chr1 161693366 161693366 1 + C T HNSC 161693364 + 161693344 161693384 41 AGGGGTGTATCGATGCCAGACACGGGGAGCACCCGTCAGTG AGGGGTGTATCGATGCCAGACATGGGGAGCACCCGTCAGTG < 41bp 0.830108002545775 0.612370343928252 0.12579283 0.23694313 prediction 0.435475317235045 Functional Loss - FCRLB ENSG00000162746 CDS Human protein_coding chr1:161693364 chr1:161693366 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_83538 0 0 0 0 1 FCRLB chr1:161693411 5'GT 161693411 Upstream 46bp
chr7 128315775 128315775 1 + C T SKCM 128315773 + 128315753 128315793 41 GATGTCTGTGAAGGGTCTGCCACCGTGATCCTCGGGGTCAC GATGTCTGTGAAGGGTCTGCCATCGTGATCCTCGGGGTCAC < 41bp 0.834875167718152 0.617141666225154 0.23964995 0.21511391 prediction 0.435467002985998 Functional Loss - FAM71F2 ENSG00000205085 CDS Human protein_coding chr7:128315773 chr7:128315775 nonsynonymous SNV 0.419 1 23 hm5C_associated_SNPs_83539 0 0 0 0 1 FAM71F2 chr7:128315729 3'AG 128315729 Downstream 47bp
chr16 57714440 57714440 1 + G A COAD 57714437 + 57714417 57714457 41 AGACCCACCTTGGACCAGTCCACGGTGCATATCCTCACACG AGACCCACCTTGGACCAGTCCACAGTGCATATCCTCACACG < 41bp 0.822541355886472 0.604809359519089 0.16757756 0.06907272 prediction 0.435463992734765 Functional Loss - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714437 chr16:57714440 synonymous SNV . 0 24 hm5C_associated_SNPs_83541 0 0 0 0 2 ADGRG3 chr16:57714417 3'AG 57714417 Downstream 24bp
chr16 57714440 57714440 1 + G A COAD 57714437 + 57714417 57714457 41 AGACCCACCTTGGACCAGTCCACGGTGCATATCCTCACACG AGACCCACCTTGGACCAGTCCACAGTGCATATCCTCACACG < 41bp 0.822541355886472 0.604809359519089 0.16757756 0.06907272 prediction 0.435463992734765 Functional Loss - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714437 chr16:57714440 synonymous SNV . 0 24 hm5C_associated_SNPs_83541 0 0 0 0 2 ADGRG3 chr16:57714529 5'GT 57714529 Upstream 90bp
chr17 7385403 7385403 1 + T C UCEC 7385402 + 7385382 7385422 41 TGGCACCAGTGCTGCCAGCCCTCTGATGCCACCAATGGCCT TGGCACCAGTGCTGCCAGCCCCCTGATGCCACCAATGGCCT < 41bp 0.717730682457901 0.469844160379544 0.39922395 0.23312443 prediction 0.435461364915802 Functional Loss - SLC35G6 ENSG00000259224 CDS Human protein_coding chr17:7385402 chr17:7385403 nonsynonymous SNV 0.964 1 22 hm5C_associated_SNPs_83544 0 0 0 0 1 SLC35G6 chr17:7385307 3'AG 7385307 Downstream 97bp
chr3 38035413 38035413 1 + G A BLCA 38035410 + 38035390 38035430 41 ACCGGAAGATGGTGCCGGTACCCGAGGGGGCTTACGGGAAC ACCGGAAGATGGTGCCGGTACCCAAGGGGGCTTACGGGAAC < 41bp 0.806633678257971 0.588905008740696 0.774716 0.27586332 prediction 0.435457339034549 Functional Loss - VILL ENSG00000136059 CDS Human protein_coding chr3:38035410 chr3:38035413 nonsynonymous SNV 0.090 1 24 hm5C_associated_SNPs_83545 0 0 0 0 2 VILL chr3:38035389 3'AG 38035389 Downstream 25bp
chr3 38035413 38035413 1 + G A BLCA 38035410 + 38035390 38035430 41 ACCGGAAGATGGTGCCGGTACCCGAGGGGGCTTACGGGAAC ACCGGAAGATGGTGCCGGTACCCAAGGGGGCTTACGGGAAC < 41bp 0.806633678257971 0.588905008740696 0.774716 0.27586332 prediction 0.435457339034549 Functional Loss - VILL ENSG00000136059 CDS Human protein_coding chr3:38035410 chr3:38035413 nonsynonymous SNV 0.090 1 24 hm5C_associated_SNPs_83545 0 0 0 0 2 VILL chr3:38035463 5'GT 38035463 Upstream 51bp
chr16 57757041 57757041 1 + C T UCEC 57757039 + 57757019 57757059 41 CTGGCCACCCCCAGGCTCTGCGCGGTGCGTGGCTCCCCTTT CTGGCCACCCCCAGGCTCTGCGTGGTGCGTGGCTCCCCTTT < 41bp 0.824316911290982 0.606588368407993 0.9002802 0.8878372 prediction 0.435457085765979 Functional Loss - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57757039 chr16:57757041 synonymous SNV . 0 23 hm5C_associated_SNPs_83546 0 0 0 0 1 DRC7 chr16:57757042 5'GT 57757042 Upstream 2bp
chr17 35299592 35299592 1 + G A UCEC 35299589 + 35299569 35299609 41 GCCTTCTTCCGCAGTCCGCGCCGGATGCGGCCGCTGGTGGA GCCTTCTTCCGCAGTCCGCGCCGAATGCGGCCGCTGGTGGA < 41bp 0.81124712250514 0.593518636966029 0.88966453 0.61733395 prediction 0.435456971078221 Functional Loss - LHX1 ENSG00000132130 CDS Human other chr17:35299589 chr17:35299592 synonymous SNV . 0 24 hm5C_associated_SNPs_83547 0 0 0 0 2 LHX1 chr17:35299497 3'AG 35299497 Downstream 96bp
chr17 35299592 35299592 1 + G A UCEC 35299589 + 35299569 35299609 41 GCCTTCTTCCGCAGTCCGCGCCGGATGCGGCCGCTGGTGGA GCCTTCTTCCGCAGTCCGCGCCGAATGCGGCCGCTGGTGGA < 41bp 0.81124712250514 0.593518636966029 0.88966453 0.61733395 prediction 0.435456971078221 Functional Loss - LHX1 ENSG00000132130 CDS Human other chr17:35299589 chr17:35299592 synonymous SNV . 0 24 hm5C_associated_SNPs_83547 0 0 0 0 2 LHX1 chr17:35299662 5'GT 35299662 Upstream 71bp
chr19 45186744 45186744 1 + G T SARC 45186742 + 45186722 45186762 41 CCGACCCTGCCCCCTACTGCCAGCTGGTGCCAACTTCCTGA CCGACCCTGCCCCCTACTGCCATCTGGTGCCAACTTCCTGA < 41bp 0.71772568773213 0.370701841186626 0.7555262 0.28919303 prediction 0.43545137546426 Functional Loss - CEACAM19 ENSG00000186567 CDS Human protein_coding chr19:45186742 chr19:45186744 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_83549 0 0 0 0 2 CEACAM19 chr19:45186706 3'AG 45186706 Downstream 39bp
chr19 45186744 45186744 1 + G T SARC 45186742 + 45186722 45186762 41 CCGACCCTGCCCCCTACTGCCAGCTGGTGCCAACTTCCTGA CCGACCCTGCCCCCTACTGCCATCTGGTGCCAACTTCCTGA < 41bp 0.71772568773213 0.370701841186626 0.7555262 0.28919303 prediction 0.43545137546426 Functional Loss - CEACAM19 ENSG00000186567 CDS Human protein_coding chr19:45186742 chr19:45186744 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_83549 0 0 0 0 2 CEACAM19 chr19:45186709 3'AG 45186709 Downstream 36bp
chr16 56670809 56670809 1 + G C LUSC 56670805 + 56670785 56670825 41 TGGGCTGAGCCAAGTGTGCCCACGGCTGCATCTGCAAAGGG TGGGCTGAGCCAAGTGTGCCCACGCCTGCATCTGCAAAGGG < 41bp 0.717722350582049 0.427312019167838 0.4856287 0.23284665 prediction 0.435444701164099 Functional Loss - MT1JP ENSG00000255986 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:56670805 chr16:56670809 . . 0 25 hm5C_associated_SNPs_83551 0 0 0 1 1 MT1JP chr16:56670764 3'AG 56670764 Downstream 46bp
chr16 56670808 56670808 1 + G T LUSC 56670805 + 56670785 56670825 41 TGGGCTGAGCCAAGTGTGCCCACGGCTGCATCTGCAAAGGG TGGGCTGAGCCAAGTGTGCCCACTGCTGCATCTGCAAAGGG < 41bp 0.717722350582049 0.329612368540637 0.4856287 0.31907302 prediction 0.435444701164099 Functional Loss - MT1JP ENSG00000255986 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:56670805 chr16:56670808 . . 0 24 hm5C_associated_SNPs_83552 0 0 0 1 1 MT1JP chr16:56670764 3'AG 56670764 Downstream 45bp
chr15 85345137 85345137 1 + C T GBM 85345134 + 85345114 85345154 41 AGTCAGTGGAGTGGGGGACGCTCCAGGCACCAGCAATGGCG AGTCAGTGGAGTGGGGGACGCTCTAGGCACCAGCAATGGCG < 41bp 0.751979645413146 0.534261436794607 0.9216736 0.88475764 prediction 0.435436417237078 Functional Loss - ZNF592 ENSG00000166716 CDS Human protein_coding chr15:85345134 chr15:85345137 nonsynonymous SNV 0.714 0 24 hm5C_associated_SNPs_83556 0 0 0 0 1 ZNF592 chr15:85345094 3'AG 85345094 Downstream 44bp
chr19 34984431 34984431 1 + G A HNSC 34984428 + 34984408 34984448 41 CCTGGGCAAGTCCTACCACCCAGGCTGCTTCCGGTGCTCCG CCTGGGCAAGTCCTACCACCCAGACTGCTTCCGGTGCTCCG < 41bp 0.717715336332521 0.472159570241983 0.88520694 0.32784295 prediction 0.435430672665043 Functional Loss - WTIP ENSG00000142279 CDS Human protein_coding chr19:34984428 chr19:34984431 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_83557 0 0 0 0 2 WTIP chr19:34984397 3'AG 34984397 Downstream 35bp
chr19 34984431 34984431 1 + G A HNSC 34984428 + 34984408 34984448 41 CCTGGGCAAGTCCTACCACCCAGGCTGCTTCCGGTGCTCCG CCTGGGCAAGTCCTACCACCCAGACTGCTTCCGGTGCTCCG < 41bp 0.717715336332521 0.472159570241983 0.88520694 0.32784295 prediction 0.435430672665043 Functional Loss - WTIP ENSG00000142279 CDS Human protein_coding chr19:34984428 chr19:34984431 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_83557 0 0 0 0 2 WTIP chr19:34984527 5'GT 34984527 Upstream 97bp
chr17 12659746 12659746 1 + G A rs369225309 12659743 + 12659723 12659763 41 CTTTGCAGAACTCAGGAGCACACGATGGCCATCCTCCAAGC CTTTGCAGAACTCAGGAGCACACAATGGCCATCCTCCAAGC < 41bp 0.788078900527468 0.570365797607305 0.54278594 0.124961466 prediction 0.435426205840326 Functional Loss - MYOCD ENSG00000141052;ENSG00000273452 CDS Human other chr17:12659743 chr17:12659746 nonsynonymous SNV 0.179 0 24 hm5C_associated_SNPs_83558 0 0 0 0 1 MYOCD chr17:12659731 3'AG 12659731 Downstream 16bp
chr2 201757010 201757010 1 + G T UCEC 201757008 + 201756988 201757028 41 TGGAAGGAGCGCCTGGTGATCCGGGCTCTGGAGAACAGAGT TGGAAGGAGCGCCTGGTGATCCTGGCTCTGGAGAACAGAGT < 41bp 0.717713066391429 0.362463407568929 0.8924179 0.27647525 prediction 0.435426132782859 Functional Loss - NIF3L1 ENSG00000196290 CDS Human protein_coding chr2:201757008 chr2:201757010 nonsynonymous SNV 0.786 0 23 hm5C_associated_SNPs_83559 0 0 1 0 1 NIF3L1 chr2:201757102 5'GT 201757102 Upstream 93bp
chr17 73813469 73813469 1 + C T BLCA 73813466 + 73813446 73813486 41 CTCTGCGGCTCCCCACCGGGCTCCATCAGGAAGCCCCCAAA CTCTGCGGCTCCCCACCGGGCTCTATCAGGAAGCCCCCAAA < 41bp 0.717711126472943 0.484316863335186 0.33834454 0.22028252 prediction 0.435422252945887 Functional Loss - UNK ENSG00000132478 CDS Human protein_coding chr17:73813466 chr17:73813469 synonymous SNV . 0 24 hm5C_associated_SNPs_83561 0 0 0 0 1 UNK chr17:73813407 3'AG 73813407 Downstream 63bp
chr8 11412343 11412343 1 + C T rs528343677 11412340 + 11412320 11412360 41 TGCCTGGATGAAGGGGGCTACTACATCTCCCCCCGGATCAC TGCCTGGATGAAGGGGGCTACTATATCTCCCCCCGGATCAC < 41bp 0.717705362722033 0.495351057340075 0.9481554 0.6994941 prediction 0.435410725444066 Functional Loss - BLK ENSG00000136573 CDS Human protein_coding chr8:11412340 chr8:11412343 synonymous SNV . 0 24 hm5C_associated_SNPs_83564 0 0 0 0 2 BLK chr8:11412252 3'AG 11412252 Downstream 92bp
chr8 11412343 11412343 1 + C T rs528343677 11412340 + 11412320 11412360 41 TGCCTGGATGAAGGGGGCTACTACATCTCCCCCCGGATCAC TGCCTGGATGAAGGGGGCTACTATATCTCCCCCCGGATCAC < 41bp 0.717705362722033 0.495351057340075 0.9481554 0.6994941 prediction 0.435410725444066 Functional Loss - BLK ENSG00000136573 CDS Human protein_coding chr8:11412340 chr8:11412343 synonymous SNV . 0 24 hm5C_associated_SNPs_83564 0 0 0 0 2 BLK chr8:11412398 5'GT 11412398 Upstream 56bp
chr14 76488726 76488726 1 + G A SKCM 76488723 + 76488703 76488743 41 GGAGGCTGGGCAGGTGATTCCGTGAAGGCTTCGAAGTGAGT GGAGGCTGGGCAGGTGATTCCGTAAAGGCTTCGAAGTGAGT < 41bp 0.71770515999641 0.471044960741153 0.7000237 0.3697266 prediction 0.435410319992821 Functional Loss - IFT43 ENSG00000119650 CDS Human protein_coding chr14:76488723 chr14:76488726 synonymous SNV . 0 24 hm5C_associated_SNPs_83565 0 0 1 0 2 IFT43 chr14:76488670 3'AG 76488670 Downstream 57bp
chr14 76488726 76488726 1 + G A SKCM 76488723 + 76488703 76488743 41 GGAGGCTGGGCAGGTGATTCCGTGAAGGCTTCGAAGTGAGT GGAGGCTGGGCAGGTGATTCCGTAAAGGCTTCGAAGTGAGT < 41bp 0.71770515999641 0.471044960741153 0.7000237 0.3697266 prediction 0.435410319992821 Functional Loss - IFT43 ENSG00000119650 CDS Human protein_coding chr14:76488723 chr14:76488726 synonymous SNV . 0 24 hm5C_associated_SNPs_83565 0 0 1 0 2 IFT43 chr14:76488737 5'GT 76488737 Upstream 12bp
chr15 41102153 41102153 1 + C T GBM 41102150 + 41102130 41102170 41 CTGAGCGCCTAGCACGACTCCGCCAGGAGAACAAGCCCAGT CTGAGCGCCTAGCACGACTCCGCTAGGAGAACAAGCCCAGT < 41bp 0.763152447582389 0.545448463017967 0.3150355 0.3229782 prediction 0.435407969128843 Functional Loss - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41102150 chr15:41102153 stopgain 0.994 1 24 hm5C_associated_SNPs_83566 0 0 0 0 1 ZFYVE19 chr15:41102168 5'GT 41102168 Upstream 16bp
chr1 202278281 202278281 1 + C T SKCM 202278278 + 202278258 202278298 41 CTTGCTCTCTCCCAGGCCTTCTCCAAGGACAGTTTCCCAAA CTTGCTCTCTCCCAGGCCTTCTCTAAGGACAGTTTCCCAAA < 41bp 0.753302720246106 0.535600104327361 0.9603195 0.9309077 prediction 0.43540523183749 Functional Loss - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202278278 chr1:202278281 synonymous SNV . 0 24 hm5C_associated_SNPs_83570 0 0 0 0 1 LGR6 chr1:202278304 5'GT 202278304 Upstream 24bp
chr19 41707208 41707208 1 + G T LUSC 41707206 + 41707186 41707226 41 AGTCATTTATTTGCTGTTTGCTGGGACGATGACGGTCAGCA AGTCATTTATTTGCTGTTTGCTTGGACGATGACGGTCAGCA < 41bp 0.717701913819531 0.359709179645463 0.28339368 0.118656814 prediction 0.435403827639062 Functional Loss - CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41707206 chr19:41707208 nonsynonymous SNV 0.072 5 23 hm5C_associated_SNPs_83571 0 0 0 0 2 CYP2S1 chr19:41707136 3'AG 41707136 Downstream 73bp
chr19 41707208 41707208 1 + G T LUSC 41707206 + 41707186 41707226 41 AGTCATTTATTTGCTGTTTGCTGGGACGATGACGGTCAGCA AGTCATTTATTTGCTGTTTGCTTGGACGATGACGGTCAGCA < 41bp 0.717701913819531 0.359709179645463 0.28339368 0.118656814 prediction 0.435403827639062 Functional Loss - CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41707206 chr19:41707208 nonsynonymous SNV 0.072 5 23 hm5C_associated_SNPs_83571 0 0 0 0 2 CYP2S1 chr19:41707277 5'GT 41707277 Upstream 70bp
chr1 3319489 3319489 1 + G C BLCA 3319488 + 3319468 3319508 41 CTGGCTGAGGAGCTCAAGCCCGAGGGCCTTGGCGGTGGCAG CTGGCTGAGGAGCTCAAGCCCCAGGGCCTTGGCGGTGGCAG < 41bp 0.744095222901324 0.526396908203177 0.93164897 0.72940135 prediction 0.435396629396293 Functional Loss - PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3319488 chr1:3319489 nonsynonymous SNV 0.028 0 22 hm5C_associated_SNPs_83572 0 0 0 0 1 PRDM16 chr1:3319562 5'GT 3319562 Upstream 74bp
chr1 110581904 110581904 1 + C T BLCA 110581902 + 110581882 110581922 41 GGAGAAGAGACTCAAGGTGGCTCGAGCAATTCTCTATGTTG GGAGAAGAGACTCAAGGTGGCTTGAGCAATTCTCTATGTTG < 41bp 0.743185608827043 0.525488712383711 0.15235859 0.0995217 prediction 0.435393792886663 Functional Loss - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110581902 chr1:110581904 stopgain 0.995 1 23 hm5C_associated_SNPs_83573 0 0 1 0 1 STRIP1 chr1:110581928 5'GT 110581928 Upstream 25bp
chr11 64136986 64136986 1 + G T BLCA 64136984 + 64136964 64137004 41 TGGAGCACATCCGCAAGAAGCGGCACTTCAGCGAGTCGGAA TGGAGCACATCCGCAAGAAGCGTCACTTCAGCGAGTCGGAA < 41bp 0.717696291773602 0.369045077260915 0.53522956 0.14587006 prediction 0.435392583547203 Functional Loss - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64136984 chr11:64136986 synonymous SNV . 0 23 hm5C_associated_SNPs_83574 0 0 1 0 1 RPS6KA4 chr11:64136918 3'AG 64136918 Downstream 69bp
chr15 41762563 41762563 1 + G A GBM 41762560 + 41762540 41762580 41 TGAAAAGTCAGACCGCTCATCACGAACATCATCGTCTGATG TGAAAAGTCAGACCGCTCATCACAAACATCATCGTCTGATG < 41bp 0.78371777404426 0.566021557830372 0.26053718 0.10590038 prediction 0.435392432427776 Functional Loss - RTF1 ENSG00000137815 CDS Human protein_coding chr15:41762560 chr15:41762563 nonsynonymous SNV 0.412 2 24 hm5C_associated_SNPs_83575 0 0 1 0 1 RTF1 chr15:41762590 5'GT 41762590 Upstream 28bp
chr15 44086132 44086132 1 + C T BLCA 44086130 + 44086110 44086150 41 CCCTTTTGTGCTTCCTTCCCCTCAGGTAGCCTCTCTCCCCC CCCTTTTGTGCTTCCTTCCCCTTAGGTAGCCTCTCTCCCCC < 41bp 0.813358913564294 0.595667060210058 0.1077615 0.17293608 prediction 0.435383706708472 Functional Loss - SERF2 ENSG00000140264 CDS Human protein_coding chr15:44086130 chr15:44086132 stopgain 1.000 0 23 hm5C_associated_SNPs_83576 0 0 1 0 1 SERF2 chr15:44086134 5'GT 44086134 Upstream 3bp
chr8 22017305 22017305 1 + G A rs8192314 22017302 + 22017282 22017322 41 CCCGAGATGCCCACAGGGACCCCGAGATGCCTGCAGTGCTT CCCGAGATGCCCACAGGGACCCCAAGATGCCTGCAGTGCTT < 41bp 0.747191918471912 0.529501035696197 0.3807969 0.13175207 prediction 0.435381765551429 Functional Loss - LGI3;SFTPC ENSG00000168481;ENSG00000168484 intergenic Human other chr8:22017302 chr8:22017305 . . 0 24 hm5C_associated_SNPs_83577 0 0 0 0 1 LGI3;SFTPC chr8:22017368 5'GT 22017368 Upstream 64bp
chr7 27856612 27856612 1 + A T THCA 27856608 + 27856588 27856628 41 TGTTGTCTGCAGCCAGCCTGCTCGAAACTTTAGTCGGCCTG TGTTGTCTGCAGCCAGCCTGCTCGTAACTTTAGTCGGCCTG < 41bp 0.906908816395126 0.689219428539391 0.3845304 0.15520847 prediction 0.43537877571147 Functional Loss - TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27856608 chr7:27856612 synonymous SNV . 0 25 hm5C_associated_SNPs_83580 0 0 1 0 1 TAX1BP1 chr7:27856657 5'GT 27856657 Upstream 46bp
chr3 185335352 185335352 1 + C T UCEC 185335350 + 185335330 185335370 41 TGCTTTCAAATTGCGAATTACTCGAGGAGATATTCAGACAT TGCTTTCAAATTGCGAATTACTTGAGGAGATATTCAGACAT < 41bp 0.878381605992543 0.660695510636533 0.84194344 0.68242705 prediction 0.435372190712021 Functional Loss - SENP2 ENSG00000163904 CDS Human protein_coding chr3:185335350 chr3:185335352 stopgain 0.949 1 23 hm5C_associated_SNPs_83581 0 0 1 0 2 SENP2 chr3:185335268 3'AG 185335268 Downstream 85bp
chr3 185335352 185335352 1 + C T UCEC 185335350 + 185335330 185335370 41 TGCTTTCAAATTGCGAATTACTCGAGGAGATATTCAGACAT TGCTTTCAAATTGCGAATTACTTGAGGAGATATTCAGACAT < 41bp 0.878381605992543 0.660695510636533 0.84194344 0.68242705 prediction 0.435372190712021 Functional Loss - SENP2 ENSG00000163904 CDS Human protein_coding chr3:185335350 chr3:185335352 stopgain 0.949 1 23 hm5C_associated_SNPs_83581 0 0 1 0 2 SENP2 chr3:185335399 5'GT 185335399 Upstream 48bp
chr1 16070673 16070673 1 + G C BLCA 16070672 + 16070652 16070692 41 CAGGGCTCCCAGGGTGCCGCCGAGAGGCTGCAGCTCTACCT CAGGGCTCCCAGGGTGCCGCCCAGAGGCTGCAGCTCTACCT < 41bp 0.891615283487443 0.673929952667131 0.9221502 0.880232 prediction 0.435370661640625 Functional Loss - TMEM82 ENSG00000162460 CDS Human protein_coding chr1:16070672 chr1:16070673 nonsynonymous SNV 0.236 0 22 hm5C_associated_SNPs_83582 0 0 0 0 1 TMEM82 chr1:16070655 3'AG 16070655 Downstream 19bp
chr19 11172511 11172511 1 + C T rs199852385 11172509 + 11172489 11172529 41 CTGAGCCCCGACATTCCAGTCTCGACCCCGAGCCCCTCGTT CTGAGCCCCGACATTCCAGTCTTGACCCCGAGCCCCTCGTT < 41bp 0.717682906725538 0.467682775526933 0.2241674 0.04158154 prediction 0.435365813451077 Functional Loss - SMARCA4 ENSG00000127616 UTR3 Human protein_coding chr19:11172509 chr19:11172511 . . 0 23 hm5C_associated_SNPs_83584 1 0 1 0 1 SMARCA4 chr19:11172460 3'AG 11172460 Downstream 52bp
chr2 128183782 128183782 1 + G A UCEC 128183779 + 128183759 128183799 41 CTCATTGATGGGAAGATGACCAGGCGGGGAGACAGCCCCTG CTCATTGATGGGAAGATGACCAGACGGGGAGACAGCCCCTG < 41bp 0.799206550379703 0.581529582505409 0.88080686 0.80434835 prediction 0.435353935748587 Functional Loss - PROC ENSG00000115718 CDS Human protein_coding chr2:128183779 chr2:128183782 synonymous SNV . 0 24 hm5C_associated_SNPs_83586 0 0 1 0 1 PROC chr2:128183803 5'GT 128183803 Upstream 22bp
chr12 49373420 49373420 1 + G C LUAD 49373419 + 49373399 49373439 41 GGGCTGCAGAGTGCCGTGCGCGAGTGCAAGTGGCAGTTCCG GGGCTGCAGAGTGCCGTGCGCCAGTGCAAGTGGCAGTTCCG < 41bp 0.71767177935192 0.394836785042461 0.5053634 0.32906118 prediction 0.435343558703839 Functional Loss - WNT1 ENSG00000125084 CDS Human protein_coding chr12:49373419 chr12:49373420 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_83589 0 0 0 0 1 WNT1 chr12:49373504 5'GT 49373504 Upstream 85bp
chr19 1043092 1043092 1 + G A CESC 1043089 + 1043069 1043109 41 TCGGGCACTGCTGCAGAGACCCCGAGGGACCAGCGGCCCCC TCGGGCACTGCTGCAGAGACCCCAAGGGACCAGCGGCCCCC < 41bp 0.717666210800781 0.472362937660818 0.57519346 0.3220057 prediction 0.435332421601563 Functional Loss - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1043089 chr19:1043092 nonsynonymous SNV 0.008 1 24 hm5C_associated_SNPs_83592 0 0 1 0 1 ABCA7 chr19:1043040 3'AG 1043040 Downstream 53bp
chr4 160252653 160252653 1 + G A UCEC 160252650 + 160252630 160252670 41 TGAAGGAGATCCTGCAATGACTCGATTTTTAGAAGAATTTG TGAAGGAGATCCTGCAATGACTCAATTTTTAGAAGAATTTG < 41bp 0.726608608939654 0.508944815028406 0.19718778 0.06693119 prediction 0.435327587822495 Functional Loss - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160252650 chr4:160252653 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_83594 0 0 1 0 2 RAPGEF2 chr4:160252583 3'AG 160252583 Downstream 71bp
chr4 160252653 160252653 1 + G A UCEC 160252650 + 160252630 160252670 41 TGAAGGAGATCCTGCAATGACTCGATTTTTAGAAGAATTTG TGAAGGAGATCCTGCAATGACTCAATTTTTAGAAGAATTTG < 41bp 0.726608608939654 0.508944815028406 0.19718778 0.06693119 prediction 0.435327587822495 Functional Loss - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160252650 chr4:160252653 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_83594 0 0 1 0 2 RAPGEF2 chr4:160252690 5'GT 160252690 Upstream 38bp
chr3 9782575 9782575 1 + C T CESC 9782572 + 9782552 9782592 41 CACGGAATGGGGTCCCATTGCTACGTCGCCTGCAGACACAC CACGGAATGGGGTCCCATTGCTATGTCGCCTGCAGACACAC < 41bp 0.717660439075829 0.495631008186495 0.2750533 0.24054849 prediction 0.435320878151657 Functional Loss - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9782572 chr3:9782575 nonsynonymous SNV 0.969 4 24 hm5C_associated_SNPs_83595 0 0 1 0 1 BRPF1 chr3:9782625 5'GT 9782625 Upstream 51bp
chr19 39207732 39207732 1 + G T LUSC 39207729 + 39207709 39207749 41 GCTTCTGTGGCCCACAGCTCCTGGAGTGGATCCGGCGCACC GCTTCTGTGGCCCACAGCTCCTGTAGTGGATCCGGCGCACC < 41bp 0.933708343765677 0.716050636625984 0.8751449 0.27480417 prediction 0.435315414279386 Functional Loss - ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39207729 chr19:39207732 stopgain 1.000 1 24 hm5C_associated_SNPs_83597 0 0 1 0 1 ACTN4 chr19:39207726 3'AG 39207726 Downstream 7bp
chr12 32520655 32520655 1 + G A SKCM 32520652 + 32520632 32520672 41 GCCACAGTGCTCACAACTAGCCGGGAGGCAAGACTGCCCAA GCCACAGTGCTCACAACTAGCCGAGAGGCAAGACTGCCCAA < 41bp 0.791511964076026 0.573854885826559 0.8909303 0.53560424 prediction 0.435314156498934 Functional Loss - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32520652 chr12:32520655 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_83598 0 0 0 2 2 BICD1 chr12:32520604 3'AG 32520604 Downstream 52bp
chr12 32520655 32520655 1 + G A SKCM 32520652 + 32520632 32520672 41 GCCACAGTGCTCACAACTAGCCGGGAGGCAAGACTGCCCAA GCCACAGTGCTCACAACTAGCCGAGAGGCAAGACTGCCCAA < 41bp 0.791511964076026 0.573854885826559 0.8909303 0.53560424 prediction 0.435314156498934 Functional Loss - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32520652 chr12:32520655 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_83598 0 0 0 2 2 BICD1 chr12:32520679 5'GT 32520679 Upstream 25bp
chr19 44030372 44030372 1 - G A UCEC 44030374 - 44030354 44030394 41 TTACACATTGAGGATGGAGACTCCATCCGCTTCGGGCGCTT TTACACATTGAGGATGGAGACTTCATCCGCTTCGGGCGCTT < 41bp 0.872602587398727 0.654950692741585 0.96748763 0.058068037 prediction 0.435303789314284 Functional Loss - ETHE1 ENSG00000105755 CDS Human protein_coding chr19:44030374 chr19:44030372 nonsynonymous SNV 0.946 1 23 hm5C_associated_SNPs_83601 0 0 0 0 1 ETHE1 chr19:44030353 5'GT 44030353 Upstream 20bp
chr12 130831058 130831058 1 + G A SKCM 130831055 + 130831035 130831075 41 GTTCAGCTCTTCTTTTTCAACACGAAGATCTAATTGGAAAG GTTCAGCTCTTCTTTTTCAACACAAAGATCTAATTGGAAAG < 41bp 0.762346723599429 0.544696089031002 0.14237472 0.066687554 prediction 0.435301269136855 Functional Loss - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130831055 chr12:130831058 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_83602 0 0 0 0 1 PIWIL1 chr12:130831129 5'GT 130831129 Upstream 72bp
chr12 34175705 34175705 1 + G T LUAD 34175703 + 34175683 34175723 41 AGGGCCATTTCTCCCTTTCCCAGGTGGGGTCCCCAACCTGT AGGGCCATTTCTCCCTTTCCCATGTGGGGTCCCCAACCTGT < 41bp 0.909614621238529 0.69197010469707 0.915498 0.40104935 prediction 0.435289033082918 Functional Loss - ALG10 ENSG00000139133 CDS Human protein_coding chr12:34175703 chr12:34175705 nonsynonymous SNV 0.888 1 23 hm5C_associated_SNPs_83605 0 0 1 0 1 ALG10 chr12:34175705 5'GT 34175705 Upstream 1bp
chr2 179255854 179255854 1 + G T LUAD 179255851 + 179255831 179255871 41 TCCAGGGGGTGGTGATAGATCAGGAGGGGAAGGCGGTGTAC TCCAGGGGGTGGTGATAGATCAGTAGGGGAAGGCGGTGTAC < 41bp 0.92483224830753 0.707191826467781 0.8771769 0.3618812 prediction 0.435280843679498 Functional Loss - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179255851 chr2:179255854 stopgain 0.996 1 24 hm5C_associated_SNPs_83607 0 0 0 0 2 OSBPL6 chr2:179255800 3'AG 179255800 Downstream 55bp
chr2 179255854 179255854 1 + G T LUAD 179255851 + 179255831 179255871 41 TCCAGGGGGTGGTGATAGATCAGGAGGGGAAGGCGGTGTAC TCCAGGGGGTGGTGATAGATCAGTAGGGGAAGGCGGTGTAC < 41bp 0.92483224830753 0.707191826467781 0.8771769 0.3618812 prediction 0.435280843679498 Functional Loss - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179255851 chr2:179255854 stopgain 0.996 1 24 hm5C_associated_SNPs_83607 0 0 0 0 2 OSBPL6 chr2:179255944 5'GT 179255944 Upstream 91bp
chr19 15763421 15763421 1 + G T UCEC 15763419 + 15763399 15763439 41 GTCCGATGAGGACATAAGAGCAGAAGCTGACACCTTTATGT GTCCGATGAGGACATAAGAGCATAAGCTGACACCTTTATGT < 41bp 0.717638552197026 0.360114996004348 0.40043235 0.15840963 prediction 0.435277104394051 Functional Loss - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15763419 chr19:15763421 stopgain 0.998 0 23 hm5C_associated_SNPs_83609 0 0 1 0 1 CYP4F3 chr19:15763379 3'AG 15763379 Downstream 43bp
chr10 74995037 74995037 1 + C T COAD 74995035 + 74995015 74995055 41 CACAAGAAAGGCTCCTTTTGCCCGACTTTTTCCCCAGGCCC CACAAGAAAGGCTCCTTTTGCCTGACTTTTTCCCCAGGCCC < 41bp 0.717638104833337 0.431558776207279 0.16415104 0.08554247 prediction 0.435276209666675 Functional Loss - FAM149B1 ENSG00000138286 CDS Human protein_coding chr10:74995035 chr10:74995037 synonymous SNV . 0 23 hm5C_associated_SNPs_83610 0 0 0 0 2 FAM149B1 chr10:74994951 3'AG 74994951 Downstream 87bp
chr10 74995037 74995037 1 + C T COAD 74995035 + 74995015 74995055 41 CACAAGAAAGGCTCCTTTTGCCCGACTTTTTCCCCAGGCCC CACAAGAAAGGCTCCTTTTGCCTGACTTTTTCCCCAGGCCC < 41bp 0.717638104833337 0.431558776207279 0.16415104 0.08554247 prediction 0.435276209666675 Functional Loss - FAM149B1 ENSG00000138286 CDS Human protein_coding chr10:74995035 chr10:74995037 synonymous SNV . 0 23 hm5C_associated_SNPs_83610 0 0 0 0 2 FAM149B1 chr10:74995076 5'GT 74995076 Upstream 40bp
chr3 10960060 10960060 1 + G T UCEC 10960056 + 10960036 10960076 41 CTGAACAGCGGCACCAGCTTCGTGGCTGGGTTTGCCATCTT CTGAACAGCGGCACCAGCTTCGTGTCTGGGTTTGCCATCTT < 41bp 0.718793157603823 0.501157288806746 0.3297733 0.13298985 prediction 0.435271737594154 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10960056 chr3:10960060 nonsynonymous SNV 0.932 1 25 hm5C_associated_SNPs_83611 0 0 1 0 2 SLC6A11 chr3:10960014 3'AG 10960014 Downstream 47bp
chr3 10960060 10960060 1 + G T UCEC 10960056 + 10960036 10960076 41 CTGAACAGCGGCACCAGCTTCGTGGCTGGGTTTGCCATCTT CTGAACAGCGGCACCAGCTTCGTGTCTGGGTTTGCCATCTT < 41bp 0.718793157603823 0.501157288806746 0.3297733 0.13298985 prediction 0.435271737594154 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10960056 chr3:10960060 nonsynonymous SNV 0.932 1 25 hm5C_associated_SNPs_83611 0 0 1 0 2 SLC6A11 chr3:10960138 5'GT 10960138 Upstream 79bp
chr5 50683565 50683565 1 + C T COAD 50683563 + 50683543 50683583 41 GCTCAGTCCCCTGCATCCAGCGCGGCCACTGCAAATGGCAG GCTCAGTCCCCTGCATCCAGCGTGGCCACTGCAAATGGCAG < 41bp 0.806169872577042 0.588534658466498 0.74280196 0.5125117 prediction 0.435270428221088 Functional Loss - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50683563 chr5:50683565 nonsynonymous SNV 0.945 4 23 hm5C_associated_SNPs_83612 0 0 0 0 1 ISL1 chr5:50683583 5'GT 50683583 Upstream 19bp
chr9 136409630 136409630 1 + G T UCEC 136409627 + 136409607 136409647 41 CCCACATCCCGGCTGGTGCCCGAGACATCCAGATTGTAGAG CCCACATCCCGGCTGGTGCCCGATACATCCAGATTGTAGAG < 41bp 0.717633437701609 0.309805479353214 0.4140869 0.08879468 prediction 0.435266875403217 Functional Loss - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136409627 chr9:136409630 nonsynonymous SNV 0.965 4 24 hm5C_associated_SNPs_83613 0 0 0 0 2 ADAMTSL2 chr9:136409592 3'AG 136409592 Downstream 39bp
chr9 136409630 136409630 1 + G T UCEC 136409627 + 136409607 136409647 41 CCCACATCCCGGCTGGTGCCCGAGACATCCAGATTGTAGAG CCCACATCCCGGCTGGTGCCCGATACATCCAGATTGTAGAG < 41bp 0.717633437701609 0.309805479353214 0.4140869 0.08879468 prediction 0.435266875403217 Functional Loss - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136409627 chr9:136409630 nonsynonymous SNV 0.965 4 24 hm5C_associated_SNPs_83613 0 0 0 0 2 ADAMTSL2 chr9:136409672 5'GT 136409672 Upstream 43bp
chr10 124184459 124184459 1 + G A UCEC 124184456 + 124184436 124184476 41 CTTTGAAATTGTAACAACGTCTCGAACTTTCTATGTGCAGG CTTTGAAATTGTAACAACGTCTCAAACTTTCTATGTGCAGG < 41bp 0.720885619637258 0.503257419619637 0.3046143 0.082416624 prediction 0.435256400035241 Functional Loss - PLEKHA1 ENSG00000107679 CDS Human protein_coding chr10:124184456 chr10:124184459 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_83616 0 0 1 0 2 PLEKHA1 chr10:124184412 3'AG 124184412 Downstream 48bp
chr10 124184459 124184459 1 + G A UCEC 124184456 + 124184436 124184476 41 CTTTGAAATTGTAACAACGTCTCGAACTTTCTATGTGCAGG CTTTGAAATTGTAACAACGTCTCAAACTTTCTATGTGCAGG < 41bp 0.720885619637258 0.503257419619637 0.3046143 0.082416624 prediction 0.435256400035241 Functional Loss - PLEKHA1 ENSG00000107679 CDS Human protein_coding chr10:124184456 chr10:124184459 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_83616 0 0 1 0 2 PLEKHA1 chr10:124184475 5'GT 124184475 Upstream 17bp
chr19 38689132 38689132 1 + C T COAD 38689130 + 38689110 38689150 41 TGCCTGACACAGCTGCTGGCCTCGAGTGGTCCAGCCTGGTG TGCCTGACACAGCTGCTGGCCTTGAGTGGTCCAGCCTGGTG < 41bp 0.717628099099066 0.433642521515741 0.35788488 0.080051035 prediction 0.435256198198131 Functional Loss - SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38689130 chr19:38689132 synonymous SNV . 0 23 hm5C_associated_SNPs_83617 0 0 0 0 1 SIPA1L3 chr19:38689172 5'GT 38689172 Upstream 41bp
chr18 29052295 29052295 1 + G A STAD 29052292 + 29052272 29052312 41 TGACTGTGGGGCAGGTTCTACTGGGGGAGTGACAGGTGGTT TGACTGTGGGGCAGGTTCTACTGAGGGAGTGACAGGTGGTT < 41bp 0.80483306985587 0.587209246146071 0.8380121 0.5810412 prediction 0.435247647419599 Functional Loss - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29052292 chr18:29052295 nonsynonymous SNV 0.120 0 24 hm5C_associated_SNPs_83620 0 0 0 0 2 DSG3 chr18:29052247 3'AG 29052247 Downstream 49bp
chr18 29052295 29052295 1 + G A STAD 29052292 + 29052272 29052312 41 TGACTGTGGGGCAGGTTCTACTGGGGGAGTGACAGGTGGTT TGACTGTGGGGCAGGTTCTACTGAGGGAGTGACAGGTGGTT < 41bp 0.80483306985587 0.587209246146071 0.8380121 0.5810412 prediction 0.435247647419599 Functional Loss - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29052292 chr18:29052295 nonsynonymous SNV 0.120 0 24 hm5C_associated_SNPs_83620 0 0 0 0 2 DSG3 chr18:29052386 5'GT 29052386 Upstream 92bp
chr14 105962230 105962230 1 + G A CESC 105962227 + 105962207 105962247 41 TCCTTCCAAGGTTTCTGGAGCGGGAGCTGCCCAAAACCTGG TCCTTCCAAGGTTTCTGGAGCGGAAGCTGCCCAAAACCTGG < 41bp 0.795046621235132 0.577432485865889 0.9032688 0.59958637 prediction 0.435228270738487 Functional Loss - C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105962227 chr14:105962230 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_83623 0 0 0 0 1 C14orf80 chr14:105962217 3'AG 105962217 Downstream 14bp
chr4 1326633 1326633 1 + A T BLCA 1326629 + 1326609 1326649 41 GGCATGCTGGCCTTCCCGCCCGACACGCACATCTCCCCGTA GGCATGCTGGCCTTCCCGCCCGACTCGCACATCTCCCCGTA < 41bp 0.896921791563777 0.679308870898518 0.022148758 0.018068254 prediction 0.435225841330518 Functional Loss - MAEA ENSG00000090316 CDS Human protein_coding chr4:1326629 chr4:1326633 nonsynonymous SNV 0.949 1 25 hm5C_associated_SNPs_83625 0 0 0 1 2 MAEA chr4:1326545 3'AG 1326545 Downstream 89bp
chr4 1326633 1326633 1 + A T BLCA 1326629 + 1326609 1326649 41 GGCATGCTGGCCTTCCCGCCCGACACGCACATCTCCCCGTA GGCATGCTGGCCTTCCCGCCCGACTCGCACATCTCCCCGTA < 41bp 0.896921791563777 0.679308870898518 0.022148758 0.018068254 prediction 0.435225841330518 Functional Loss - MAEA ENSG00000090316 CDS Human protein_coding chr4:1326629 chr4:1326633 nonsynonymous SNV 0.949 1 25 hm5C_associated_SNPs_83625 0 0 0 1 2 MAEA chr4:1326653 5'GT 1326653 Upstream 21bp
chr17 48701800 48701800 1 + C T rs2301835 48701798 + 48701778 48701818 41 CCAAAGATGCACCTCATCTGCTCCAGCCCCACAGCGCCCCA CCAAAGATGCACCTCATCTGCTTCAGCCCCACAGCGCCCCA < 41bp 0.796442284390108 0.578831659790096 0.8692789 0.3244763 prediction 0.435221249200024 Functional Loss - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48701798 chr17:48701800 synonymous SNV . 0 23 hm5C_associated_SNPs_83628 0 0 0 0 2 CACNA1G chr17:48701721 3'AG 48701721 Downstream 80bp
chr17 48701800 48701800 1 + C T rs2301835 48701798 + 48701778 48701818 41 CCAAAGATGCACCTCATCTGCTCCAGCCCCACAGCGCCCCA CCAAAGATGCACCTCATCTGCTTCAGCCCCACAGCGCCCCA < 41bp 0.796442284390108 0.578831659790096 0.8692789 0.3244763 prediction 0.435221249200024 Functional Loss - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48701798 chr17:48701800 synonymous SNV . 0 23 hm5C_associated_SNPs_83628 0 0 0 0 2 CACNA1G chr17:48701890 5'GT 48701890 Upstream 91bp
chr19 55106182 55106182 1 + G C UCEC 55106178 + 55106158 55106198 41 TGAGCCAGGCTCTGTGATCACCCAGGGGAGTCCCGTGACCC TGAGCCAGGCTCTGTGATCACCCACGGGAGTCCCGTGACCC < 41bp 0.717609724265181 0.413189668863706 0.19081059 0.1419329 prediction 0.435219448530362 Functional Loss - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55106178 chr19:55106182 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_83629 0 0 0 0 1 LILRA1 chr19:55106130 3'AG 55106130 Downstream 53bp
chr1 198711060 198711060 1 + C T UCEC 198711058 + 198711038 198711078 41 AGTTCACCAGCTGGCCAGACCACGGGGTGCCTGAGGATCCT AGTTCACCAGCTGGCCAGACCATGGGGTGCCTGAGGATCCT < 41bp 0.717604005161411 0.439571848254142 0.8562335 0.72517467 prediction 0.435208010322822 Functional Loss - PTPRC ENSG00000081237 CDS Human protein_coding chr1:198711058 chr1:198711060 synonymous SNV . 0 23 hm5C_associated_SNPs_83632 0 0 1 0 2 PTPRC chr1:198710998 3'AG 198710998 Downstream 63bp
chr1 198711060 198711060 1 + C T UCEC 198711058 + 198711038 198711078 41 AGTTCACCAGCTGGCCAGACCACGGGGTGCCTGAGGATCCT AGTTCACCAGCTGGCCAGACCATGGGGTGCCTGAGGATCCT < 41bp 0.717604005161411 0.439571848254142 0.8562335 0.72517467 prediction 0.435208010322822 Functional Loss - PTPRC ENSG00000081237 CDS Human protein_coding chr1:198711058 chr1:198711060 synonymous SNV . 0 23 hm5C_associated_SNPs_83632 0 0 1 0 2 PTPRC chr1:198711155 5'GT 198711155 Upstream 96bp
chr3 125635476 125635476 1 + G A CESC 125635473 + 125635453 125635493 41 GCCCCGCCCACGTCATGGCGCCCGAGGAGAACGCTGGGACC GCCCCGCCCACGTCATGGCGCCCAAGGAGAACGCTGGGACC < 41bp 0.80089822739173 0.583295859253033 0.25339556 0.083204925 prediction 0.435204736277395 Functional Loss - FAM86JP ENSG00000171084 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:125635473 chr3:125635476 . . 0 24 hm5C_associated_SNPs_83633 0 0 0 0 1 FAM86JP chr3:125635562 5'GT 125635562 Upstream 87bp
chr1 55473906 55473906 1 + G A SKCM 55473903 + 55473883 55473923 41 GCAGCCCCCTGGCCTGTCCCCAGGGCCCTGCCCCCTTGGCT GCAGCCCCCTGGCCTGTCCCCAGAGCCCTGCCCCCTTGGCT < 41bp 0.814453523570291 0.596857280629352 0.9333073 0.89597744 prediction 0.435192485881877 Functional Loss - BSND ENSG00000162399 CDS Human protein_coding chr1:55473903 chr1:55473906 nonsynonymous SNV 0.811 0 24 hm5C_associated_SNPs_83637 0 0 0 0 1 BSND chr1:55473887 3'AG 55473887 Downstream 20bp
chr6 121768024 121768024 1 + C T SKCM 121768021 + 121768001 121768041 41 ACTGGAGCGCCTTAGGCAAACTCCTTGACAAGGTTCAAGCC ACTGGAGCGCCTTAGGCAAACTCTTTGACAAGGTTCAAGCC < 41bp 0.745177673361492 0.527581523872281 0.09351084 0.07691589 prediction 0.435192298978423 Functional Loss - GJA1 ENSG00000152661 CDS Human protein_coding chr6:121768021 chr6:121768024 nonsynonymous SNV 0.938 5 24 hm5C_associated_SNPs_83638 1 0 1 0 2 GJA1 chr6:121767978 3'AG 121767978 Downstream 47bp
chr6 121768024 121768024 1 + C T SKCM 121768021 + 121768001 121768041 41 ACTGGAGCGCCTTAGGCAAACTCCTTGACAAGGTTCAAGCC ACTGGAGCGCCTTAGGCAAACTCTTTGACAAGGTTCAAGCC < 41bp 0.745177673361492 0.527581523872281 0.09351084 0.07691589 prediction 0.435192298978423 Functional Loss - GJA1 ENSG00000152661 CDS Human protein_coding chr6:121768021 chr6:121768024 nonsynonymous SNV 0.938 5 24 hm5C_associated_SNPs_83638 1 0 1 0 2 GJA1 chr6:121768070 5'GT 121768070 Upstream 47bp
chr20 45354893 45354893 1 + A C ESCA 45354892 + 45354872 45354912 41 TCTGCCCGCTCGGGGGCATGCACTGCTGCGCTGGACCGCAC TCTGCCCGCTCGGGGGCATGCCCTGCTGCGCTGGACCGCAC < 41bp 0.825123313911651 0.607530784514245 0.14942968 0.12960273 prediction 0.435185058794811 Functional Loss - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45354892 chr20:45354893 synonymous SNV . 0 22 hm5C_associated_SNPs_83643 0 0 0 0 1 SLC2A10 chr20:45354963 5'GT 45354963 Upstream 71bp
chr6 34735713 34735713 1 + T C GBM 34735712 + 34735692 34735732 41 ATTTCAACAAGGAAAGATACCTCCTACTCCATTCTCTGCTC ATTTCAACAAGGAAAGATACCCCCTACTCCATTCTCTGCTC < 41bp 0.717591234566892 0.451059819270576 0.031855583 0.015894264 prediction 0.435182469133784 Functional Loss - SNRPC ENSG00000124562 CDS Human protein_coding chr6:34735712 chr6:34735713 synonymous SNV . 0 22 hm5C_associated_SNPs_83646 0 0 1 0 2 SNRPC chr6:34735685 3'AG 34735685 Downstream 29bp
chr6 34735713 34735713 1 + T C GBM 34735712 + 34735692 34735732 41 ATTTCAACAAGGAAAGATACCTCCTACTCCATTCTCTGCTC ATTTCAACAAGGAAAGATACCCCCTACTCCATTCTCTGCTC < 41bp 0.717591234566892 0.451059819270576 0.031855583 0.015894264 prediction 0.435182469133784 Functional Loss - SNRPC ENSG00000124562 CDS Human protein_coding chr6:34735712 chr6:34735713 synonymous SNV . 0 22 hm5C_associated_SNPs_83646 0 0 1 0 2 SNRPC chr6:34735774 5'GT 34735774 Upstream 62bp
chr14 53184843 53184843 1 + G A UCEC 53184840 + 53184820 53184860 41 CACGAGCCGTTGCTAGCCAGCTGGACTGCAATTTCTTAAAG CACGAGCCGTTGCTAGCCAGCTGAACTGCAATTTCTTAAAG < 41bp 0.748796943309534 0.531211813780245 0.5794259 0.47669014 prediction 0.435170259058578 Functional Loss - PSMC6 ENSG00000100519 CDS Human protein_coding chr14:53184840 chr14:53184843 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_83649 0 0 1 0 2 PSMC6 chr14:53184799 3'AG 53184799 Downstream 45bp
chr14 53184843 53184843 1 + G A UCEC 53184840 + 53184820 53184860 41 CACGAGCCGTTGCTAGCCAGCTGGACTGCAATTTCTTAAAG CACGAGCCGTTGCTAGCCAGCTGAACTGCAATTTCTTAAAG < 41bp 0.748796943309534 0.531211813780245 0.5794259 0.47669014 prediction 0.435170259058578 Functional Loss - PSMC6 ENSG00000100519 CDS Human protein_coding chr14:53184840 chr14:53184843 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_83649 0 0 1 0 2 PSMC6 chr14:53184860 5'GT 53184860 Upstream 18bp
chr8 86389403 86389403 1 + T C rs703 86389402 + 86389382 86389422 41 CGTGGCCTCCTTCCTGAATCCTTGGATTACTGGACCTACCC CGTGGCCTCCTTCCTGAATCCCTGGATTACTGGACCTACCC < 41bp 0.717584834082299 0.464298417645975 0.16454533 0.15073484 prediction 0.435169668164598 Functional Loss - CA2 ENSG00000104267 CDS Human protein_coding chr8:86389402 chr8:86389403 synonymous SNV . 0 22 hm5C_associated_SNPs_83650 2 0 1 0 1 CA2 chr8:86389349 3'AG 86389349 Downstream 55bp
chr5 176079809 176079809 1 + C T SKCM 176079806 + 176079786 176079826 41 ACAGGGATCCTGGCCTTTGTCTTCAAGGACTGGATTCGAGA ACAGGGATCCTGGCCTTTGTCTTTAAGGACTGGATTCGAGA < 41bp 0.717583278610399 0.483475267615659 0.24350688 0.058778435 prediction 0.435166557220799 Functional Loss - TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176079806 chr5:176079809 synonymous SNV . 0 24 hm5C_associated_SNPs_83651 0 0 1 0 1 TSPAN17 chr5:176079744 3'AG 176079744 Downstream 66bp
chr4 657985 657985 1 + G T COAD 657982 + 657962 658002 41 GCTGGGTGGAGTACCTGTCCCTGGAGACGACCCGGAAGGAG GCTGGGTGGAGTACCTGTCCCTGTAGACGACCCGGAAGGAG < 41bp 0.934000506411736 0.716422775844212 0.07208094 0.035567105 prediction 0.435155461135048 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:657982 chr4:657985 stopgain 0.983 1 24 hm5C_associated_SNPs_83653 0 0 0 0 2 PDE6B chr4:657903 3'AG 657903 Downstream 83bp
chr4 657985 657985 1 + G T COAD 657982 + 657962 658002 41 GCTGGGTGGAGTACCTGTCCCTGGAGACGACCCGGAAGGAG GCTGGGTGGAGTACCTGTCCCTGTAGACGACCCGGAAGGAG < 41bp 0.934000506411736 0.716422775844212 0.07208094 0.035567105 prediction 0.435155461135048 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:657982 chr4:657985 stopgain 0.983 1 24 hm5C_associated_SNPs_83653 0 0 0 0 2 PDE6B chr4:658010 5'GT 658010 Upstream 26bp
chr8 19811636 19811636 1 + G A UCEC 19811633 + 19811613 19811653 41 GCTTTTTTCCCTTTTAAGGCCTCGATCCAGCTGGACCTAAC GCTTTTTTCCCTTTTAAGGCCTCAATCCAGCTGGACCTAAC < 41bp 0.71757421625655 0.487066387211117 0.109297186 0.009395421 prediction 0.4351484325131 Functional Loss - LPL ENSG00000175445 CDS Human protein_coding chr8:19811633 chr8:19811636 nonsynonymous SNV 0.733 5 24 hm5C_associated_SNPs_83657 0 0 1 0 1 LPL chr8:19811631 3'AG 19811631 Downstream 6bp
chr14 75928203 75928203 1 + G A LUSC 75928200 + 75928180 75928220 41 GCAGCAGCCCGATGCCGGAACAAGAAGAAGGAGCGCACGGA GCAGCAGCCCGATGCCGGAACAAAAAGAAGGAGCGCACGGA < 41bp 0.810316102312603 0.592742499149134 0.4583176 0.2063753 prediction 0.435147206326938 Functional Loss - JDP2 ENSG00000140044 CDS Human protein_coding chr14:75928200 chr14:75928203 synonymous SNV . 0 24 hm5C_associated_SNPs_83658 0 0 0 0 2 JDP2 chr14:75928129 3'AG 75928129 Downstream 75bp
chr14 75928203 75928203 1 + G A LUSC 75928200 + 75928180 75928220 41 GCAGCAGCCCGATGCCGGAACAAGAAGAAGGAGCGCACGGA GCAGCAGCCCGATGCCGGAACAAAAAGAAGGAGCGCACGGA < 41bp 0.810316102312603 0.592742499149134 0.4583176 0.2063753 prediction 0.435147206326938 Functional Loss - JDP2 ENSG00000140044 CDS Human protein_coding chr14:75928200 chr14:75928203 synonymous SNV . 0 24 hm5C_associated_SNPs_83658 0 0 0 0 2 JDP2 chr14:75928233 5'GT 75928233 Upstream 31bp
chr17 45009463 45009463 1 + G T LUAD 45009461 + 45009441 45009481 41 ACCAGTTAAAGTATGATGTCCAGCACCTGCAGACTGCGCTC ACCAGTTAAAGTATGATGTCCATCACCTGCAGACTGCGCTC < 41bp 0.717571567049569 0.368275502609699 0.06981793 0.05403042 prediction 0.435143134099138 Functional Loss - GOSR2 ENSG00000108433;ENSG00000262633 CDS Human other chr17:45009461 chr17:45009463 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_83659 0 0 1 0 1 GOSR2 chr17:45009433 3'AG 45009433 Downstream 31bp
chr17 45009464 45009464 1 + C T LUAD 45009461 + 45009441 45009481 41 ACCAGTTAAAGTATGATGTCCAGCACCTGCAGACTGCGCTC ACCAGTTAAAGTATGATGTCCAGTACCTGCAGACTGCGCTC < 41bp 0.717571567049569 0.493381423901845 0.06981793 0.10778338 prediction 0.435143134099138 Functional Loss - GOSR2 ENSG00000108433;ENSG00000262633 CDS Human other chr17:45009461 chr17:45009464 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_83660 0 0 1 0 1 GOSR2 chr17:45009433 3'AG 45009433 Downstream 32bp
chr1 8390352 8390352 1 + C T SKCM 8390349 + 8390329 8390369 41 GGAGGGCCCTGGGGGGACAGCTCCGAGTCATTTACCTCTTC GGAGGGCCCTGGGGGGACAGCTCTGAGTCATTTACCTCTTC < 41bp 0.734840073520169 0.517274586698562 0.81850755 0.72853875 prediction 0.435130973643213 Functional Loss - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8390349 chr1:8390352 stopgain 0.598 1 24 hm5C_associated_SNPs_83662 0 0 0 0 1 SLC45A1 chr1:8390269 3'AG 8390269 Downstream 84bp
chr4 70155435 70155435 1 + G A LGG 70155432 + 70155412 70155452 41 AGATGCCTTAGGTCTCAATACTCGGCTGTATAAGTGGATAC AGATGCCTTAGGTCTCAATACTCAGCTGTATAAGTGGATAC < 41bp 0.772659358191484 0.555098467994122 0.48122326 0.12574807 prediction 0.435121780394723 Functional Loss - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70155432 chr4:70155435 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_83664 0 0 0 0 2 UGT2B28 chr4:70155383 3'AG 70155383 Downstream 53bp
chr4 70155435 70155435 1 + G A LGG 70155432 + 70155412 70155452 41 AGATGCCTTAGGTCTCAATACTCGGCTGTATAAGTGGATAC AGATGCCTTAGGTCTCAATACTCAGCTGTATAAGTGGATAC < 41bp 0.772659358191484 0.555098467994122 0.48122326 0.12574807 prediction 0.435121780394723 Functional Loss - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70155432 chr4:70155435 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_83664 0 0 0 0 2 UGT2B28 chr4:70155470 5'GT 70155470 Upstream 36bp
chr21 43711670 43711670 1 + C T UCEC 43711667 + 43711647 43711687 41 ATGACGTCGCAGCCGTCCGACGCCGTGCGCTTTGTGCTGTT ATGACGTCGCAGCCGTCCGACGCTGTGCGCTTTGTGCTGTT < 41bp 0.723313905246426 0.505756753191058 0.32008457 0.10383916 prediction 0.435114304110735 Functional Loss - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43711667 chr21:43711670 synonymous SNV . 0 24 hm5C_associated_SNPs_83666 0 0 0 0 2 ABCG1 chr21:43711608 3'AG 43711608 Downstream 63bp
chr21 43711670 43711670 1 + C T UCEC 43711667 + 43711647 43711687 41 ATGACGTCGCAGCCGTCCGACGCCGTGCGCTTTGTGCTGTT ATGACGTCGCAGCCGTCCGACGCTGTGCGCTTTGTGCTGTT < 41bp 0.723313905246426 0.505756753191058 0.32008457 0.10383916 prediction 0.435114304110735 Functional Loss - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43711667 chr21:43711670 synonymous SNV . 0 24 hm5C_associated_SNPs_83666 0 0 0 0 2 ABCG1 chr21:43711766 5'GT 43711766 Upstream 97bp
chr4 79516982 79516982 1 + C T BLCA 79516980 + 79516960 79517000 41 GCTGGTGAGAACAGATGGGGCACGGATGAAGACAAATTCAC GCTGGTGAGAACAGATGGGGCATGGATGAAGACAAATTCAC < 41bp 0.717553780750274 0.439798758669894 0.14169315 0.11634058 prediction 0.435107561500547 Functional Loss - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79516980 chr4:79516982 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_83669 0 0 0 0 2 ANXA3 chr4:79516948 3'AG 79516948 Downstream 35bp
chr4 79516982 79516982 1 + C T BLCA 79516980 + 79516960 79517000 41 GCTGGTGAGAACAGATGGGGCACGGATGAAGACAAATTCAC GCTGGTGAGAACAGATGGGGCATGGATGAAGACAAATTCAC < 41bp 0.717553780750274 0.439798758669894 0.14169315 0.11634058 prediction 0.435107561500547 Functional Loss - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79516980 chr4:79516982 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_83669 0 0 0 0 2 ANXA3 chr4:79517041 5'GT 79517041 Upstream 60bp
chr7 128490051 128490051 1 + G A SKCM 128490048 + 128490028 128490068 41 AGGCGTGTGACCCCCTGCCGCACGAGGAGGAGCCCTCTGAA AGGCGTGTGACCCCCTGCCGCACAAGGAGGAGCCCTCTGAA < 41bp 0.717552575040563 0.477340512321388 0.5068029 0.36889905 prediction 0.435105150081126 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128490048 chr7:128490051 nonsynonymous SNV 0.196 1 24 hm5C_associated_SNPs_83670 0 0 1 0 2 FLNC chr7:128490030 3'AG 128490030 Downstream 22bp
chr7 128490051 128490051 1 + G A SKCM 128490048 + 128490028 128490068 41 AGGCGTGTGACCCCCTGCCGCACGAGGAGGAGCCCTCTGAA AGGCGTGTGACCCCCTGCCGCACAAGGAGGAGCCCTCTGAA < 41bp 0.717552575040563 0.477340512321388 0.5068029 0.36889905 prediction 0.435105150081126 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128490048 chr7:128490051 nonsynonymous SNV 0.196 1 24 hm5C_associated_SNPs_83670 0 0 1 0 2 FLNC chr7:128490128 5'GT 128490128 Upstream 78bp
chr19 41089338 41089338 1 + C T UCEC 41089336 + 41089316 41089356 41 CAGCCCATCACCAGTTATGACGCGGCAGGCTCCTTCCTCCT CAGCCCATCACCAGTTATGACGTGGCAGGCTCCTTCCTCCT < 41bp 0.831192760151032 0.61364220642498 0.89480585 0.87969637 prediction 0.435101107452105 Functional Loss - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41089336 chr19:41089338 nonsynonymous SNV 0.026 2 23 hm5C_associated_SNPs_83671 0 0 1 0 2 SHKBP1 chr19:41089304 3'AG 41089304 Downstream 35bp
chr19 41089338 41089338 1 + C T UCEC 41089336 + 41089316 41089356 41 CAGCCCATCACCAGTTATGACGCGGCAGGCTCCTTCCTCCT CAGCCCATCACCAGTTATGACGTGGCAGGCTCCTTCCTCCT < 41bp 0.831192760151032 0.61364220642498 0.89480585 0.87969637 prediction 0.435101107452105 Functional Loss - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41089336 chr19:41089338 nonsynonymous SNV 0.026 2 23 hm5C_associated_SNPs_83671 0 0 1 0 2 SHKBP1 chr19:41089391 5'GT 41089391 Upstream 54bp
chr2 24246501 24246501 1 + C T UCEC 24246499 + 24246479 24246519 41 ACTTTCAGCTGCAGCACCGTCACGGGCCAGGCCTGGAGACC ACTTTCAGCTGCAGCACCGTCATGGGCCAGGCCTGGAGACC < 41bp 0.824288101997917 0.606744468139067 0.35131198 0.57174736 prediction 0.4350872677177 Functional Loss - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24246499 chr2:24246501 synonymous SNV . 0 23 hm5C_associated_SNPs_83674 0 0 0 0 2 MFSD2B chr2:24246453 3'AG 24246453 Downstream 49bp
chr2 24246501 24246501 1 + C T UCEC 24246499 + 24246479 24246519 41 ACTTTCAGCTGCAGCACCGTCACGGGCCAGGCCTGGAGACC ACTTTCAGCTGCAGCACCGTCATGGGCCAGGCCTGGAGACC < 41bp 0.824288101997917 0.606744468139067 0.35131198 0.57174736 prediction 0.4350872677177 Functional Loss - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24246499 chr2:24246501 synonymous SNV . 0 23 hm5C_associated_SNPs_83674 0 0 0 0 2 MFSD2B chr2:24246596 5'GT 24246596 Upstream 96bp
chr1 217824450 217824450 1 + G T LIHC 217824448 + 217824428 217824468 41 TTTTATCCTAGGCATTTAAACAGGATTGTAACAATTATTCA TTTTATCCTAGGCATTTAAACATGATTGTAACAATTATTCA < 41bp 0.717541323619766 0.396026136403241 0.67546725 0.25160962 prediction 0.435082647239531 Functional Loss - SPATA17 ENSG00000162814 CDS Human protein_coding chr1:217824448 chr1:217824450 nonsynonymous SNV 0.018 1 23 hm5C_associated_SNPs_83677 0 0 0 0 2 SPATA17 chr1:217824439 3'AG 217824439 Downstream 12bp
chr1 217824450 217824450 1 + G T LIHC 217824448 + 217824428 217824468 41 TTTTATCCTAGGCATTTAAACAGGATTGTAACAATTATTCA TTTTATCCTAGGCATTTAAACATGATTGTAACAATTATTCA < 41bp 0.717541323619766 0.396026136403241 0.67546725 0.25160962 prediction 0.435082647239531 Functional Loss - SPATA17 ENSG00000162814 CDS Human protein_coding chr1:217824448 chr1:217824450 nonsynonymous SNV 0.018 1 23 hm5C_associated_SNPs_83677 0 0 0 0 2 SPATA17 chr1:217824520 5'GT 217824520 Upstream 71bp
chr16 70162962 70162962 1 + G A SKCM 70162959 + 70162939 70162979 41 TGGTGGGGGCCATGCATGTTCCCGAGGATGCAGTGGTGTCT TGGTGGGGGCCATGCATGTTCCCAAGGATGCAGTGGTGTCT < 41bp 0.804408165450351 0.586871361200953 0.3768705 0.23650464 prediction 0.435073608498795 Functional Loss - PDPR ENSG00000090857 CDS Human protein_coding chr16:70162959 chr16:70162962 nonsynonymous SNV 0.976 1 24 hm5C_associated_SNPs_83680 0 0 1 0 1 PDPR chr16:70163025 5'GT 70163025 Upstream 64bp
chrX 108780219 108780219 1 + C T BRCA 108780217 + 108780197 108780237 41 ACGCCGACACTGCCAGAACACACTGCTACAAGGTCCCAGAT ACGCCGACACTGCCAGAACACATTGCTACAAGGTCCCAGAT < 41bp 0.824987277848204 0.607453003748177 0.38424188 0.31564295 prediction 0.435068548200053 Functional Loss - NXT2 ENSG00000101888 CDS Human protein_coding chrX:108780217 chrX:108780219 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_83681 0 0 0 0 2 NXT2 chrX:108780166 3'AG 108780166 Downstream 54bp
chrX 108780219 108780219 1 + C T BRCA 108780217 + 108780197 108780237 41 ACGCCGACACTGCCAGAACACACTGCTACAAGGTCCCAGAT ACGCCGACACTGCCAGAACACATTGCTACAAGGTCCCAGAT < 41bp 0.824987277848204 0.607453003748177 0.38424188 0.31564295 prediction 0.435068548200053 Functional Loss - NXT2 ENSG00000101888 CDS Human protein_coding chrX:108780217 chrX:108780219 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_83681 0 0 0 0 2 NXT2 chrX:108780250 5'GT 108780250 Upstream 32bp
chr10 97625949 97625949 1 + G C HNSC 97625948 + 97625928 97625968 41 TTGCAGATCCAGGGCAGCGACGCCGGCTGGACTTTGGGCTA TTGCAGATCCAGGGCAGCGACCCCGGCTGGACTTTGGGCTA < 41bp 0.717527592362339 0.423875127949057 0.3402034 0.4498752 prediction 0.435055184724679 Functional Loss - ENTPD1 ENSG00000138185 CDS Human protein_coding chr10:97625948 chr10:97625949 nonsynonymous SNV 0.238 3 22 hm5C_associated_SNPs_83683 0 0 0 0 1 ENTPD1 chr10:97625934 3'AG 97625934 Downstream 16bp
chr5 135188338 135188338 1 + G A rs61745845 135188335 + 135188315 135188355 41 GTGTTTGGGGTCTTCAGTAACACGCAGCGGTTCCTCAGCCA GTGTTTGGGGTCTTCAGTAACACACAGCGGTTCCTCAGCCA < 41bp 0.812716142886748 0.59518902938449 0.08703047 0.027050436 prediction 0.435054227004515 Functional Loss - SLC25A48 ENSG00000145832 CDS Human protein_coding chr5:135188335 chr5:135188338 synonymous SNV . 0 24 hm5C_associated_SNPs_83684 0 0 0 0 1 SLC25A48 chr5:135188252 3'AG 135188252 Downstream 87bp
chr1 183203576 183203576 1 + A C UCEC 183203575 + 183203555 183203595 41 TCAGGAGGCCACAAGATTAGCAGAAAGGTGAGCAGCATTAG TCAGGAGGCCACAAGATTAGCCGAAAGGTGAGCAGCATTAG < 41bp 0.71752273745762 0.442425820435697 0.7144189 0.26562148 prediction 0.435045474915239 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183203575 chr1:183203576 synonymous SNV . 0 22 hm5C_associated_SNPs_83685 0 0 0 0 2 LAMC2 chr1:183203502 3'AG 183203502 Downstream 75bp
chr1 183203576 183203576 1 + A C UCEC 183203575 + 183203555 183203595 41 TCAGGAGGCCACAAGATTAGCAGAAAGGTGAGCAGCATTAG TCAGGAGGCCACAAGATTAGCCGAAAGGTGAGCAGCATTAG < 41bp 0.71752273745762 0.442425820435697 0.7144189 0.26562148 prediction 0.435045474915239 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183203575 chr1:183203576 synonymous SNV . 0 22 hm5C_associated_SNPs_83685 0 0 0 0 2 LAMC2 chr1:183203581 5'GT 183203581 Upstream 6bp
chr2 201397742 201397742 1 + G A UCEC 201397739 + 201397719 201397759 41 AACTGGCTCACTTTTTACCTCAGGAATTAAGAGACATTTGA AACTGGCTCACTTTTTACCTCAGAAATTAAGAGACATTTGA < 41bp 0.745019885873495 0.527501620859408 0.6366546 0.3746665 prediction 0.435036530028174 Functional Loss - SGO2 ENSG00000163535 CDS Human protein_coding chr2:201397739 chr2:201397742 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_83687 0 0 1 0 2 SGO2 chr2:201397697 3'AG 201397697 Downstream 46bp
chr2 201397742 201397742 1 + G A UCEC 201397739 + 201397719 201397759 41 AACTGGCTCACTTTTTACCTCAGGAATTAAGAGACATTTGA AACTGGCTCACTTTTTACCTCAGAAATTAAGAGACATTTGA < 41bp 0.745019885873495 0.527501620859408 0.6366546 0.3746665 prediction 0.435036530028174 Functional Loss - SGO2 ENSG00000163535 CDS Human protein_coding chr2:201397739 chr2:201397742 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_83687 0 0 1 0 2 SGO2 chr2:201397831 5'GT 201397831 Upstream 90bp
chr17 74464954 74464954 1 + G T STAD 74464952 + 74464932 74464972 41 GTGAGTTTCGCTGCCTCACCCCGGAGGACGCTGTCAGCGCC GTGAGTTTCGCTGCCTCACCCCTGAGGACGCTGTCAGCGCC < 41bp 0.913599300834255 0.696081646413979 0.9206308 0.12779465 prediction 0.435035308840553 Functional Loss - AANAT ENSG00000129673 CDS Human protein_coding chr17:74464952 chr17:74464954 synonymous SNV . 0 23 hm5C_associated_SNPs_83689 0 0 0 0 1 AANAT chr17:74464991 5'GT 74464991 Upstream 38bp
chr12 108960978 108960978 1 + T C LUSC 108960977 + 108960957 108960997 41 GCCTCTCAGGTGGAGGAAGCCTTGACTATCAAAAACACAGA GCCTCTCAGGTGGAGGAAGCCCTGACTATCAAAAACACAGA < 41bp 0.717516036386594 0.452813317026627 0.045809627 0.09585899 prediction 0.435032072773188 Functional Loss - ISCU ENSG00000136003 CDS Human protein_coding chr12:108960977 chr12:108960978 synonymous SNV . 0 22 hm5C_associated_SNPs_83691 0 0 1 0 2 ISCU chr12:108960966 3'AG 108960966 Downstream 13bp
chr12 108960978 108960978 1 + T C LUSC 108960977 + 108960957 108960997 41 GCCTCTCAGGTGGAGGAAGCCTTGACTATCAAAAACACAGA GCCTCTCAGGTGGAGGAAGCCCTGACTATCAAAAACACAGA < 41bp 0.717516036386594 0.452813317026627 0.045809627 0.09585899 prediction 0.435032072773188 Functional Loss - ISCU ENSG00000136003 CDS Human protein_coding chr12:108960977 chr12:108960978 synonymous SNV . 0 22 hm5C_associated_SNPs_83691 0 0 1 0 2 ISCU chr12:108961044 5'GT 108961044 Upstream 67bp
chr22 25011077 25011077 1 + C T SKCM 25011075 + 25011055 25011095 41 TTTGCCACCATGTTCAACAGCTCGGAGCAGTCCCAGAAGGG TTTGCCACCATGTTCAACAGCTTGGAGCAGTCCCAGAAGGG < 41bp 0.717513240210743 0.454916982187974 0.2805156 0.41512603 prediction 0.435026480421487 Functional Loss - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25011075 chr22:25011077 nonsynonymous SNV 0.509 0 23 hm5C_associated_SNPs_83694 0 0 1 0 1 GGT1 chr22:25011008 3'AG 25011008 Downstream 70bp
chr3 183951032 183951032 1 + C T CESC 183951030 + 183951010 183951050 41 CTGCCCACAGGCATTATCGCCGCGGCTGGCACCATGACGGT CTGCCCACAGGCATTATCGCCGTGGCTGGCACCATGACGGT < 41bp 0.717511430003919 0.462300862481964 0.84765077 0.8600946 prediction 0.435022860007837 Functional Loss - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183951030 chr3:183951032 nonsynonymous SNV 0.673 1 23 hm5C_associated_SNPs_83696 0 0 0 0 1 VWA5B2 chr3:183950966 3'AG 183950966 Downstream 67bp
chr13 33855249 33855249 1 + G A rs73468162 33855246 + 33855226 33855266 41 ACTTAACCACAGAGAGGATTCCAGAACCTGAGACACAGAAT ACTTAACCACAGAGAGGATTCCAAAACCTGAGACACAGAAT < 41bp 0.748941112755847 0.531431002985934 0.11635357 0.04623711 prediction 0.435020219539827 Functional Loss - STARD13-AS ENSG00000236581 ncRNA_exonic Human processed_transcript chr13:33855246 chr13:33855249 . . 0 24 hm5C_associated_SNPs_83697 0 0 0 0 1 STARD13-AS chr13:33855166 3'AG 33855166 Downstream 84bp
chr16 81685954 81685954 1 + G A PAAD 81685951 + 81685931 81685971 41 CAGGCCCCACTGGAAATCGTCTCGAAACTGCTCTCAGAGGT CAGGCCCCACTGGAAATCGTCTCAAAACTGCTCTCAGAGGT < 41bp 0.717509908167396 0.478610561394922 0.95571625 0.2854756 prediction 0.435019816334792 Functional Loss - CMIP ENSG00000153815 CDS Human protein_coding chr16:81685951 chr16:81685954 synonymous SNV . 0 24 hm5C_associated_SNPs_83698 0 0 1 0 1 CMIP chr16:81685969 5'GT 81685969 Upstream 16bp
chr16 81685953 81685953 1 + C T UCEC 81685951 + 81685931 81685971 41 CAGGCCCCACTGGAAATCGTCTCGAAACTGCTCTCAGAGGT CAGGCCCCACTGGAAATCGTCTTGAAACTGCTCTCAGAGGT < 41bp 0.717509908167396 0.408721120187126 0.95571625 0.32137913 prediction 0.435019816334792 Functional Loss - CMIP ENSG00000153815 CDS Human protein_coding chr16:81685951 chr16:81685953 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_83699 0 0 1 0 1 CMIP chr16:81685969 5'GT 81685969 Upstream 17bp
chr11 89774308 89774308 1 + G T UCEC 89774305 + 89774285 89774325 41 TGTGTATTGGATGTGACCATCAAGATGTACCCTATTTCACT TGTGTATTGGATGTGACCATCAATATGTACCCTATTTCACT < 41bp 0.717507169909525 0.33116815111629 0.4287646 0.08964822 prediction 0.435014339819049 Functional Loss - TRIM49C ENSG00000204449 CDS Human protein_coding chr11:89774305 chr11:89774308 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_83701 0 0 0 0 1 TRIM49C chr11:89774219 3'AG 89774219 Downstream 90bp
chr2 101611898 101611898 1 + G A SKCM 101611895 + 101611875 101611915 41 CCTCTTTGCACAGTGAGCAGCAGGACTCGCTACTTCTCTCC CCTCTTTGCACAGTGAGCAGCAGAACTCGCTACTTCTCTCC < 41bp 0.771992326593443 0.554489714753357 0.7860867 0.64745444 prediction 0.435005223680172 Functional Loss - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101611895 chr2:101611898 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_83702 0 0 1 2 1 NPAS2 chr2:101611862 3'AG 101611862 Downstream 37bp
chr1 222835656 222835656 1 + G A LUSC 222835653 + 222835633 222835673 41 TCAAGAGGCTCTTCCCCTACCAGGGTACTCGATGAAGGCAA TCAAGAGGCTCTTCCCCTACCAGAGTACTCGATGAAGGCAA < 41bp 0.717502302325006 0.476551434372657 0.91013265 0.81256974 prediction 0.435004604650012 Functional Loss - MIA3 ENSG00000154305 CDS Human protein_coding chr1:222835653 chr1:222835656 synonymous SNV . 0 24 hm5C_associated_SNPs_83703 0 0 1 0 2 MIA3 chr1:222835595 3'AG 222835595 Downstream 62bp
chr1 222835656 222835656 1 + G A LUSC 222835653 + 222835633 222835673 41 TCAAGAGGCTCTTCCCCTACCAGGGTACTCGATGAAGGCAA TCAAGAGGCTCTTCCCCTACCAGAGTACTCGATGAAGGCAA < 41bp 0.717502302325006 0.476551434372657 0.91013265 0.81256974 prediction 0.435004604650012 Functional Loss - MIA3 ENSG00000154305 CDS Human protein_coding chr1:222835653 chr1:222835656 synonymous SNV . 0 24 hm5C_associated_SNPs_83703 0 0 1 0 2 MIA3 chr1:222835674 5'GT 222835674 Upstream 19bp
chr4 106888416 106888416 1 + G A rs35613262 106888413 + 106888393 106888433 41 CTGCACGCTTGGTGCTACCTCTCGGCCGCCTCATGCATTCA CTGCACGCTTGGTGCTACCTCTCAGCCGCCTCATGCATTCA < 41bp 0.811063042984977 0.593565288630667 0.07520962 0.053241163 prediction 0.43499550870862 Functional Loss - NPNT ENSG00000168743 CDS Human protein_coding chr4:106888413 chr4:106888416 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_83705 0 0 1 0 1 NPNT chr4:106888345 3'AG 106888345 Downstream 72bp
chr17 76490205 76490205 1 + G A UCEC 76490202 + 76490182 76490222 41 TCCAGCTGCACCACCTTCAGCACGAAGCTGTCCTCCGCCTG TCCAGCTGCACCACCTTCAGCACAAAGCTGTCCTCCGCCTG < 41bp 0.80128403251157 0.583792602333168 0.3642277 0.18431738 prediction 0.434982860356805 Functional Loss - DNAH17 ENSG00000187775 CDS Human processed_transcript chr17:76490202 chr17:76490205 synonymous SNV . 0 24 hm5C_associated_SNPs_83711 0 0 0 0 1 DNAH17-AS1 chr17:76490279 5'GT 76490279 Upstream 75bp
chr13 31318223 31318223 1 + G A SKCM 31318220 + 31318200 31318240 41 TCTTTGCCCATAAAGTGGAGCACGAAAGCAGGACCCAGAAT TCTTTGCCCATAAAGTGGAGCACAAAAGCAGGACCCAGAAT < 41bp 0.735389463494575 0.517902635691075 0.27149603 0.20627266 prediction 0.434973655607001 Functional Loss - ALOX5AP ENSG00000132965 CDS Human protein_coding chr13:31318220 chr13:31318223 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_83715 0 0 0 0 2 ALOX5AP chr13:31318197 3'AG 31318197 Downstream 27bp
chr13 31318223 31318223 1 + G A SKCM 31318220 + 31318200 31318240 41 TCTTTGCCCATAAAGTGGAGCACGAAAGCAGGACCCAGAAT TCTTTGCCCATAAAGTGGAGCACAAAAGCAGGACCCAGAAT < 41bp 0.735389463494575 0.517902635691075 0.27149603 0.20627266 prediction 0.434973655607001 Functional Loss - ALOX5AP ENSG00000132965 CDS Human protein_coding chr13:31318220 chr13:31318223 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_83715 0 0 0 0 2 ALOX5AP chr13:31318296 5'GT 31318296 Upstream 74bp
chr5 57913618 57913618 1 + C T UCEC 57913615 + 57913595 57913635 41 TGCAGATGACTCCTTTACATCTGCATTCGTCAGCACAGTTG TGCAGATGACTCCTTTACATCTGTATTCGTCAGCACAGTTG < 41bp 0.734530105631976 0.517044167736691 0.19851449 0.0615142 prediction 0.434971875790571 Functional Loss - RAB3C ENSG00000152932 CDS Human protein_coding chr5:57913615 chr5:57913618 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_83716 0 0 0 0 1 RAB3C chr5:57913697 5'GT 57913697 Upstream 80bp
chr19 57743956 57743956 1 + C T SKCM 57743953 + 57743933 57743973 41 ATAACTATTTCCATGATGCACGCCGGGTGTACCTGATTCTG ATAACTATTTCCATGATGCACGCTGGGTGTACCTGATTCTG < 41bp 0.723830442908222 0.506347218867974 0.018993378 0.016176999 prediction 0.434966448080496 Functional Loss - AURKC ENSG00000105146 CDS Human protein_coding chr19:57743953 chr19:57743956 nonsynonymous SNV 0.001 4 24 hm5C_associated_SNPs_83718 0 0 1 0 2 AURKC chr19:57743910 3'AG 57743910 Downstream 47bp
chr19 57743956 57743956 1 + C T SKCM 57743953 + 57743933 57743973 41 ATAACTATTTCCATGATGCACGCCGGGTGTACCTGATTCTG ATAACTATTTCCATGATGCACGCTGGGTGTACCTGATTCTG < 41bp 0.723830442908222 0.506347218867974 0.018993378 0.016176999 prediction 0.434966448080496 Functional Loss - AURKC ENSG00000105146 CDS Human protein_coding chr19:57743953 chr19:57743956 nonsynonymous SNV 0.001 4 24 hm5C_associated_SNPs_83718 0 0 1 0 2 AURKC chr19:57744048 5'GT 57744048 Upstream 93bp
chr2 231867452 231867452 1 + G A UCEC 231867449 + 231867429 231867469 41 TAACGCGTGTCCTCCAAGCCCTCGGAACTGTGGCTGTGGCT TAACGCGTGTCCTCCAAGCCCTCAGAACTGTGGCTGTGGCT < 41bp 0.717471572892493 0.46729937193538 0.29099506 0.09316352 prediction 0.434943145784987 Functional Loss - SPATA3 ENSG00000173699 CDS Human protein_coding chr2:231867449 chr2:231867452 nonsynonymous SNV 0.829 0 24 hm5C_associated_SNPs_83725 0 0 0 0 2 SPATA3 chr2:231867399 3'AG 231867399 Downstream 54bp
chr2 231867452 231867452 1 + G A UCEC 231867449 + 231867429 231867469 41 TAACGCGTGTCCTCCAAGCCCTCGGAACTGTGGCTGTGGCT TAACGCGTGTCCTCCAAGCCCTCAGAACTGTGGCTGTGGCT < 41bp 0.717471572892493 0.46729937193538 0.29099506 0.09316352 prediction 0.434943145784987 Functional Loss - SPATA3 ENSG00000173699 CDS Human protein_coding chr2:231867449 chr2:231867452 nonsynonymous SNV 0.829 0 24 hm5C_associated_SNPs_83725 0 0 0 0 2 SPATA3 chr2:231867542 5'GT 231867542 Upstream 91bp
chr17 79860389 79860389 1 + G A rs188270141 79860386 + 79860366 79860406 41 CCCGGAGCTGCAACTGCACCCCAGGCTGCGGAGCCTCGTGA CCCGGAGCTGCAACTGCACCCCAAGCTGCGGAGCCTCGTGA < 41bp 0.766760968442418 0.549296403351712 0.109742194 0.023869187 prediction 0.434929130181412 Functional Loss - NPB ENSG00000183979 CDS Human protein_coding chr17:79860386 chr17:79860389 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_83728 0 0 0 0 1 NPB chr17:79860402 5'GT 79860402 Upstream 14bp
chr19 40480314 40480314 1 + G A UCEC 40480311 + 40480291 40480331 41 CACTGGTGGACGTGCTGCCCCCCGAAGCCGACAGCAGCATC CACTGGTGGACGTGCTGCCCCCCAAAGCCGACAGCAGCATC < 41bp 0.804202308455172 0.586738193665108 0.041030705 0.02821067 prediction 0.434928229580129 Functional Loss - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40480311 chr19:40480314 nonsynonymous SNV 0.939 4 24 hm5C_associated_SNPs_83729 0 0 1 0 1 PSMC4 chr19:40480347 5'GT 40480347 Upstream 34bp
chr16 72143405 72143405 1 + G A STAD 72143402 + 72143382 72143422 41 CGTGAAACAGGCGGGCAAGTCACGGCAGGTGAGGATTCTGT CGTGAAACAGGCGGGCAAGTCACAGCAGGTGAGGATTCTGT < 41bp 0.791918489724074 0.574465104840883 0.7650378 0.46483004 prediction 0.434906769766383 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72143402 chr16:72143405 nonsynonymous SNV 0.877 2 24 hm5C_associated_SNPs_83732 0 0 1 0 2 DHX38 chr16:72143314 3'AG 72143314 Downstream 92bp
chr16 72143405 72143405 1 + G A STAD 72143402 + 72143382 72143422 41 CGTGAAACAGGCGGGCAAGTCACGGCAGGTGAGGATTCTGT CGTGAAACAGGCGGGCAAGTCACAGCAGGTGAGGATTCTGT < 41bp 0.791918489724074 0.574465104840883 0.7650378 0.46483004 prediction 0.434906769766383 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72143402 chr16:72143405 nonsynonymous SNV 0.877 2 24 hm5C_associated_SNPs_83732 0 0 1 0 2 DHX38 chr16:72143409 5'GT 72143409 Upstream 5bp
chr5 14607518 14607518 1 + C T UCEC 14607516 + 14607496 14607536 41 GGTCCTGAGAAGTATACAGGCTCGAATGTGTTTGGAAAACT GGTCCTGAGAAGTATACAGGCTTGAATGTGTTTGGAAAACT < 41bp 0.717448330173988 0.412598277721781 0.09141755 0.1198982 prediction 0.434896660347977 Functional Loss - FAM105A ENSG00000145569 CDS Human protein_coding chr5:14607516 chr5:14607518 nonsynonymous SNV 0.926 0 23 hm5C_associated_SNPs_83735 0 0 1 0 2 FAM105A chr5:14607439 3'AG 14607439 Downstream 80bp
chr5 14607518 14607518 1 + C T UCEC 14607516 + 14607496 14607536 41 GGTCCTGAGAAGTATACAGGCTCGAATGTGTTTGGAAAACT GGTCCTGAGAAGTATACAGGCTTGAATGTGTTTGGAAAACT < 41bp 0.717448330173988 0.412598277721781 0.09141755 0.1198982 prediction 0.434896660347977 Functional Loss - FAM105A ENSG00000145569 CDS Human protein_coding chr5:14607516 chr5:14607518 nonsynonymous SNV 0.926 0 23 hm5C_associated_SNPs_83735 0 0 1 0 2 FAM105A chr5:14607567 5'GT 14607567 Upstream 50bp
chr8 56698434 56698434 1 + C T UCEC 56698431 + 56698411 56698451 41 ACTTCAATTTGGTAGGATAACTGCACATAAGGATTTTGAGG ACTTCAATTTGGTAGGATAACTGTACATAAGGATTTTGAGG < 41bp 0.721913567080057 0.504467863819354 0.050068438 0.057326376 prediction 0.434891406521404 Functional Loss - TGS1 ENSG00000137574 CDS Human protein_coding chr8:56698431 chr8:56698434 nonsynonymous SNV 0.897 0 24 hm5C_associated_SNPs_83737 0 0 1 0 1 TGS1 chr8:56698450 5'GT 56698450 Upstream 17bp
chr2 102818108 102818108 1 + G A OV 102818105 + 102818085 102818125 41 GCAGAGGACAGAGGGAACTACGCGTGTCAAGCCATACTGAC GCAGAGGACAGAGGGAACTACGCATGTCAAGCCATACTGAC < 41bp 0.800575784895232 0.58313051219535 0.37106255 0.25529468 prediction 0.434890545399764 Functional Loss - IL1RL2 ENSG00000115598 CDS Human protein_coding chr2:102818105 chr2:102818108 synonymous SNV . 0 24 hm5C_associated_SNPs_83738 0 0 0 0 2 IL1RL2 chr2:102818016 3'AG 102818016 Downstream 93bp
chr2 102818108 102818108 1 + G A OV 102818105 + 102818085 102818125 41 GCAGAGGACAGAGGGAACTACGCGTGTCAAGCCATACTGAC GCAGAGGACAGAGGGAACTACGCATGTCAAGCCATACTGAC < 41bp 0.800575784895232 0.58313051219535 0.37106255 0.25529468 prediction 0.434890545399764 Functional Loss - IL1RL2 ENSG00000115598 CDS Human protein_coding chr2:102818105 chr2:102818108 synonymous SNV . 0 24 hm5C_associated_SNPs_83738 0 0 0 0 2 IL1RL2 chr2:102818175 5'GT 102818175 Upstream 68bp
chrX 40457953 40457953 1 + T C LUAD 40457952 + 40457932 40457972 41 GGTTGACCTGCTCTTTCTTTCTGAACTGCAAGTGCTACATG GGTTGACCTGCTCTTTCTTTCCGAACTGCAAGTGCTACATG < 41bp 0.789125753204917 0.571687184297614 0.2661994 0.41183454 prediction 0.434877137814606 Functional Loss - ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40457952 chrX:40457953 synonymous SNV . 0 22 hm5C_associated_SNPs_83743 0 0 1 0 2 ATP6AP2 chrX:40457933 3'AG 40457933 Downstream 21bp
chrX 40457953 40457953 1 + T C LUAD 40457952 + 40457932 40457972 41 GGTTGACCTGCTCTTTCTTTCTGAACTGCAAGTGCTACATG GGTTGACCTGCTCTTTCTTTCCGAACTGCAAGTGCTACATG < 41bp 0.789125753204917 0.571687184297614 0.2661994 0.41183454 prediction 0.434877137814606 Functional Loss - ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40457952 chrX:40457953 synonymous SNV . 0 22 hm5C_associated_SNPs_83743 0 0 1 0 2 ATP6AP2 chrX:40457986 5'GT 40457986 Upstream 34bp
chr7 94053716 94053716 1 + G A LUSC 94053713 + 94053693 94053733 41 GGTATTCTGGGTCTCCCTGGCTCGAGAGGTGAACGTGGTCT GGTATTCTGGGTCTCCCTGGCTCAAGAGGTGAACGTGGTCT < 41bp 0.776531059972267 0.559097562847042 0.32886207 0.38788807 prediction 0.43486699425045 Functional Loss - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94053713 chr7:94053716 synonymous SNV . 0 24 hm5C_associated_SNPs_83744 0 0 0 0 1 COL1A2 chr7:94053648 3'AG 94053648 Downstream 69bp
chr17 72937897 72937897 1 + G T LUAD 72937894 + 72937874 72937914 41 GATCCCCACGCGGGGCCCCTCTGGGTGCGGGGTGAGTGTCA GATCCCCACGCGGGGCCCCTCTGTGTGCGGGGTGAGTGTCA < 41bp 0.929740700561269 0.712309388042536 0.564623 0.06488863 prediction 0.434862625037466 Functional Loss - OTOP3 ENSG00000182938 CDS Human protein_coding chr17:72937894 chr17:72937897 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_83746 0 0 0 0 1 OTOP3 chr17:72937904 5'GT 72937904 Upstream 8bp
chr18 61226915 61226915 1 + C T rs201721976 61226912 + 61226892 61226932 41 GATTACACACTGAGTATTGCCAACAGGCTTTATGGAGAGCA GATTACACACTGAGTATTGCCAATAGGCTTTATGGAGAGCA < 41bp 0.728692616642935 0.511270052346921 0.16268957 0.10106534 prediction 0.434845128592028 Functional Loss - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61226912 chr18:61226915 synonymous SNV . 0 24 hm5C_associated_SNPs_83749 0 0 0 0 1 SERPINB12 chr18:61226951 5'GT 61226951 Upstream 37bp
chr12 110952939 110952939 1 + G T COAD 110952936 + 110952916 110952956 41 ACTCCACTGAATTTTTGCCTCAAGAGTTCTAATGAGGAATC ACTCCACTGAATTTTTGCCTCAATAGTTCTAATGAGGAATC < 41bp 0.717419500083508 0.342127814418349 0.63658667 0.33694404 prediction 0.434839000167015 Functional Loss - RAD9B ENSG00000151164 CDS Human protein_coding chr12:110952936 chr12:110952939 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_83751 0 0 0 0 2 RAD9B chr12:110952855 3'AG 110952855 Downstream 85bp
chr12 110952939 110952939 1 + G T COAD 110952936 + 110952916 110952956 41 ACTCCACTGAATTTTTGCCTCAAGAGTTCTAATGAGGAATC ACTCCACTGAATTTTTGCCTCAATAGTTCTAATGAGGAATC < 41bp 0.717419500083508 0.342127814418349 0.63658667 0.33694404 prediction 0.434839000167015 Functional Loss - RAD9B ENSG00000151164 CDS Human protein_coding chr12:110952936 chr12:110952939 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_83751 0 0 0 0 2 RAD9B chr12:110952961 5'GT 110952961 Upstream 23bp
chr17 41177413 41177413 1 + G C CESC 41177409 + 41177389 41177429 41 AAGATCGTGGTGGTGGGAGACGCAGAGTGCGGCAAGACGGC AAGATCGTGGTGGTGGGAGACGCACAGTGCGGCAAGACGGC < 41bp 0.717419049709889 0.423418529639616 0.8524087 0.38065305 prediction 0.434838099419778 Functional Loss - RND2 ENSG00000108830 CDS Human protein_coding chr17:41177409 chr17:41177413 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_83752 0 0 1 0 1 RND2 chr17:41177466 5'GT 41177466 Upstream 54bp
chr6 70646766 70646766 1 + G T COAD 70646764 + 70646744 70646784 41 CTTCATATCTGCCAGCAAAGCAGGAACTTAAAGACCAGTGC CTTCATATCTGCCAGCAAAGCATGAACTTAAAGACCAGTGC < 41bp 0.71741727823428 0.379328263549617 0.40983042 0.02801019 prediction 0.434834556468561 Functional Loss - COL19A1 ENSG00000082293 CDS Human protein_coding chr6:70646764 chr6:70646766 nonsynonymous SNV 0.767 2 23 hm5C_associated_SNPs_83754 0 0 0 0 2 COL19A1 chr6:70646677 3'AG 70646677 Downstream 90bp
chr6 70646766 70646766 1 + G T COAD 70646764 + 70646744 70646784 41 CTTCATATCTGCCAGCAAAGCAGGAACTTAAAGACCAGTGC CTTCATATCTGCCAGCAAAGCATGAACTTAAAGACCAGTGC < 41bp 0.71741727823428 0.379328263549617 0.40983042 0.02801019 prediction 0.434834556468561 Functional Loss - COL19A1 ENSG00000082293 CDS Human protein_coding chr6:70646764 chr6:70646766 nonsynonymous SNV 0.767 2 23 hm5C_associated_SNPs_83754 0 0 0 0 2 COL19A1 chr6:70646802 5'GT 70646802 Upstream 37bp
chr6 70646767 70646767 1 + G A READ 70646764 + 70646744 70646784 41 CTTCATATCTGCCAGCAAAGCAGGAACTTAAAGACCAGTGC CTTCATATCTGCCAGCAAAGCAGAAACTTAAAGACCAGTGC < 41bp 0.71741727823428 0.492280534989051 0.40983042 0.276562 prediction 0.434834556468561 Functional Loss - COL19A1 ENSG00000082293 CDS Human protein_coding chr6:70646764 chr6:70646767 nonsynonymous SNV 0.770 0 24 hm5C_associated_SNPs_83755 0 0 0 0 2 COL19A1 chr6:70646677 3'AG 70646677 Downstream 91bp
chr6 70646767 70646767 1 + G A READ 70646764 + 70646744 70646784 41 CTTCATATCTGCCAGCAAAGCAGGAACTTAAAGACCAGTGC CTTCATATCTGCCAGCAAAGCAGAAACTTAAAGACCAGTGC < 41bp 0.71741727823428 0.492280534989051 0.40983042 0.276562 prediction 0.434834556468561 Functional Loss - COL19A1 ENSG00000082293 CDS Human protein_coding chr6:70646764 chr6:70646767 nonsynonymous SNV 0.770 0 24 hm5C_associated_SNPs_83755 0 0 0 0 2 COL19A1 chr6:70646802 5'GT 70646802 Upstream 36bp
chr1 44365285 44365285 1 + C T UCEC 44365283 + 44365263 44365303 41 CGACACTGCGCATCACCTACCCCGAGGGCGCCATGCAGCGG CGACACTGCGCATCACCTACCCTGAGGGCGCCATGCAGCGG < 41bp 0.790432891692357 0.573020531336695 0.10341391 0.09048501 prediction 0.434824720711323 Functional Loss - ST3GAL3 ENSG00000126091 CDS Human protein_coding chr1:44365283 chr1:44365285 synonymous SNV . 0 23 hm5C_associated_SNPs_83759 0 0 1 0 1 ST3GAL3 chr1:44365213 3'AG 44365213 Downstream 73bp
chr2 135099198 135099198 1 + G A BLCA 135099195 + 135099175 135099215 41 GGGACTCCTGACCAAGGAATCTGGATTTAAGATTGCAGAGA GGGACTCCTGACCAAGGAATCTGAATTTAAGATTGCAGAGA < 41bp 0.783704791528236 0.566293415978302 0.5014079 0.3321814 prediction 0.434822751099868 Functional Loss - MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135099195 chr2:135099198 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_83760 0 0 0 0 1 MGAT5 chr2:135099161 3'AG 135099161 Downstream 38bp
chr9 77257711 77257711 1 + G A SKCM 77257708 + 77257688 77257728 41 CAACAATGGGCAGTTAGCACCAGGGATAACCATGACTGAAA CAACAATGGGCAGTTAGCACCAGAGATAACCATGACTGAAA < 41bp 0.757957393562428 0.540546433665664 0.91212356 0.8909284 prediction 0.434821919793527 Functional Loss - RORB ENSG00000198963 CDS Human protein_coding chr9:77257708 chr9:77257711 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_83761 0 0 0 0 1 RORB chr9:77257731 5'GT 77257731 Upstream 21bp
chr19 41515988 41515988 1 + C T UCEC 41515985 + 41515965 41516005 41 TTTGCTGGCACTGAGACCACCAGCACCACTCTCCGCTACGG TTTGCTGGCACTGAGACCACCAGTACCACTCTCCGCTACGG < 41bp 0.717407661860908 0.498713024187415 0.23140582 0.16154632 prediction 0.434815323721816 Functional Loss - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41515985 chr19:41515988 synonymous SNV . 0 24 hm5C_associated_SNPs_83763 0 0 0 0 2 CYP2B6 chr19:41515899 3'AG 41515899 Downstream 90bp
chr19 41515988 41515988 1 + C T UCEC 41515985 + 41515965 41516005 41 TTTGCTGGCACTGAGACCACCAGCACCACTCTCCGCTACGG TTTGCTGGCACTGAGACCACCAGTACCACTCTCCGCTACGG < 41bp 0.717407661860908 0.498713024187415 0.23140582 0.16154632 prediction 0.434815323721816 Functional Loss - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41515985 chr19:41515988 synonymous SNV . 0 24 hm5C_associated_SNPs_83763 0 0 0 0 2 CYP2B6 chr19:41516040 5'GT 41516040 Upstream 53bp
chr11 118253407 118253407 1 + C T UCEC 118253404 + 118253384 118253424 41 CCTTGGTATCCAGTGTGTTCCACCGGAAACGTGTGTTCTGC CCTTGGTATCCAGTGTGTTCCACTGGAAACGTGTGTTCTGC < 41bp 0.738055643706918 0.520648690121401 0.15114015 0.13215211 prediction 0.434813907171034 Functional Loss - UBE4A ENSG00000110344 CDS Human protein_coding chr11:118253404 chr11:118253407 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_83764 0 0 1 0 1 UBE4A chr11:118253491 5'GT 118253491 Upstream 85bp
chr1 158225818 158225818 1 + G A LUSC 158225815 + 158225795 158225835 41 TCCTTTTGAGATACAGGTGACAGGAGGCTGTGAGCTGCACT TCCTTTTGAGATACAGGTGACAGAAGGCTGTGAGCTGCACT < 41bp 0.773271034614867 0.555866180364482 0.41068938 0.28853092 prediction 0.43480970850077 Functional Loss - CD1A ENSG00000158477 CDS Human protein_coding chr1:158225815 chr1:158225818 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_83765 0 0 0 0 1 CD1A chr1:158225794 3'AG 158225794 Downstream 25bp
chrX 47069480 47069480 1 + G A UCEC 47069477 + 47069457 47069497 41 CACCACTGGCACACCCAGTACTCGAACAACATCCGGCAGCT CACCACTGGCACACCCAGTACTCAAACAACATCCGGCAGCT < 41bp 0.801723993084495 0.584331368176698 0.9018315 0.8840312 prediction 0.434785249815595 Functional Loss - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47069477 chrX:47069480 synonymous SNV . 0 24 hm5C_associated_SNPs_83773 1 0 1 0 1 UBA1 chrX:47069522 5'GT 47069522 Upstream 43bp
chr17 34539909 34539909 1 + G A LGG 34539906 + 34539886 34539926 41 TCCAAACCAAAAGAGGCAAGCAAGTCTGCGCTGACCCCAGT TCCAAACCAAAAGAGGCAAGCAAATCTGCGCTGACCCCAGT < 41bp 0.744289465462926 0.526899555293832 0.36857486 0.2882589 prediction 0.434779820338188 Functional Loss - CCL4L1;CCL4L2 ENSG00000205020 CDS Human other chr17:34539906 chr17:34539909 nonsynonymous SNV 0.771 0 24 hm5C_associated_SNPs_83775 0 0 0 0 1 CCL4L1;CCL4L2 chr17:34539899 3'AG 34539899 Downstream 11bp
chr3 52549450 52549450 1 + G A SKCM 52549447 + 52549427 52549467 41 CCCCGTTTCCAGGACACACCCAGGAAGAGCTGTGTCTACCG CCCCGTTTCCAGGACACACCCAGAAAGAGCTGTGTCTACCG < 41bp 0.763896400247425 0.546506674645022 0.9407071 0.46408108 prediction 0.434779451204805 Functional Loss - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52549447 chr3:52549450 synonymous SNV . 0 24 hm5C_associated_SNPs_83776 0 0 0 0 2 STAB1 chr3:52549439 3'AG 52549439 Downstream 12bp
chr3 52549450 52549450 1 + G A SKCM 52549447 + 52549427 52549467 41 CCCCGTTTCCAGGACACACCCAGGAAGAGCTGTGTCTACCG CCCCGTTTCCAGGACACACCCAGAAAGAGCTGTGTCTACCG < 41bp 0.763896400247425 0.546506674645022 0.9407071 0.46408108 prediction 0.434779451204805 Functional Loss - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52549447 chr3:52549450 synonymous SNV . 0 24 hm5C_associated_SNPs_83776 0 0 0 0 2 STAB1 chr3:52549522 5'GT 52549522 Upstream 73bp
chr19 36640769 36640769 1 + T C rs14100 36640768 + 36640748 36640788 41 GCCCCAGACCCGCCCCCTCACTGCCTTGCTATAGGAGTCAC GCCCCAGACCCGCCCCCTCACCGCCTTGCTATAGGAGTCAC < 41bp 0.717389515108003 0.490712780684312 0.10349867 0.13909808 prediction 0.434779030216006 Functional Loss - CAPNS1 ENSG00000126247 UTR3 Human protein_coding chr19:36640768 chr19:36640769 . . 0 22 hm5C_associated_SNPs_83777 0 0 1 4 1 CAPNS1 chr19:36640715 3'AG 36640715 Downstream 55bp
chr2 112785952 112785952 1 + G A SKCM 112785949 + 112785929 112785969 41 TATGAAATAATGTACTCTTGCTGGAGAACCGATCCCTTAGA TATGAAATAATGTACTCTTGCTGAAGAACCGATCCCTTAGA < 41bp 0.761600171540261 0.544211662409451 0.46043813 0.16392234 prediction 0.43477701826162 Functional Loss - MERTK ENSG00000153208 CDS Human protein_coding chr2:112785949 chr2:112785952 stopgain 0.977 0 24 hm5C_associated_SNPs_83779 0 0 1 0 1 MERTK chr2:112785928 3'AG 112785928 Downstream 25bp
chrX 64951020 64951020 1 + G T LUSC 64951018 + 64950998 64951038 41 ACCAGTGGGAGGAGCGGATCCAGGTGTGGCATGAGGAACAC ACCAGTGGGAGGAGCGGATCCATGTGTGGCATGAGGAACAC < 41bp 0.912812030614455 0.69542521720298 0.8471083 0.17898849 prediction 0.434773626822951 Functional Loss - MSN ENSG00000147065 CDS Human protein_coding chrX:64951018 chrX:64951020 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_83782 0 0 1 0 1 MSN chrX:64951052 5'GT 64951052 Upstream 33bp
chr10 75550818 75550818 1 + G A CESC 75550815 + 75550795 75550835 41 TGCTGCGCCCTCTGAGGGGCCGTGAGCCAGAGGGCGTCTGG TGCTGCGCCCTCTGAGGGGCCGTAAGCCAGAGGGCGTCTGG < 41bp 0.717386068204622 0.481198536165067 0.3863158 0.33950096 prediction 0.434772136409245 Functional Loss - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75550815 chr10:75550818 nonsynonymous SNV 0.876 3 24 hm5C_associated_SNPs_83783 0 0 1 0 1 ZSWIM8 chr10:75550733 3'AG 75550733 Downstream 86bp
chr3 38357848 38357848 1 + G A COAD 38357845 + 38357825 38357865 41 CTGGGGCTGGTGTCTCTGGCCTCGGTGGCTGGAGCCATCTT CTGGGGCTGGTGTCTCTGGCCTCAGTGGCTGGAGCCATCTT < 41bp 0.802664078107899 0.585283546952455 0.050664723 0.03803602 prediction 0.434761062310888 Functional Loss - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38357845 chr3:38357848 synonymous SNV . 0 24 hm5C_associated_SNPs_83785 0 0 0 0 1 SLC22A14 chr3:38357815 3'AG 38357815 Downstream 34bp
chrX 135288624 135288624 1 + G A UCEC 135288621 + 135288601 135288641 41 AAGTTTGACTGCCACTACTGCAGGGATCCCTTGCAGGGGAA AAGTTTGACTGCCACTACTGCAGAGATCCCTTGCAGGGGAA < 41bp 0.780458571065188 0.563082341281122 0.90349466 0.80593085 prediction 0.434752459568133 Functional Loss - FHL1 ENSG00000022267 CDS Human protein_coding chrX:135288621 chrX:135288624 synonymous SNV . 0 24 hm5C_associated_SNPs_83788 0 0 1 0 2 FHL1 chrX:135288566 3'AG 135288566 Downstream 59bp
chrX 135288624 135288624 1 + G A UCEC 135288621 + 135288601 135288641 41 AAGTTTGACTGCCACTACTGCAGGGATCCCTTGCAGGGGAA AAGTTTGACTGCCACTACTGCAGAGATCCCTTGCAGGGGAA < 41bp 0.780458571065188 0.563082341281122 0.90349466 0.80593085 prediction 0.434752459568133 Functional Loss - FHL1 ENSG00000022267 CDS Human protein_coding chrX:135288621 chrX:135288624 synonymous SNV . 0 24 hm5C_associated_SNPs_83788 0 0 1 0 2 FHL1 chrX:135288692 5'GT 135288692 Upstream 69bp
chr2 157407157 157407157 1 + G A STAD 157407154 + 157407134 157407174 41 GCCAAATGTGTTATCAATGCCACGGGACCTTTCACGGACTC GCCAAATGTGTTATCAATGCCACAGGACCTTTCACGGACTC < 41bp 0.767121852938346 0.5497486646706 0.12724358 0.15128896 prediction 0.434746376535493 Functional Loss - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407154 chr2:157407157 synonymous SNV . 0 24 hm5C_associated_SNPs_83790 0 0 1 1 1 GPD2 chr2:157407114 3'AG 157407114 Downstream 44bp
chr11 44931317 44931317 1 + G T LUSC 44931315 + 44931295 44931335 41 ATGGTGGACCCCACCGGCTTCCGGGAGATCGTGGCTGCCAA ATGGTGGACCCCACCGGCTTCCTGGAGATCGTGGCTGCCAA < 41bp 0.717370207717371 0.352700588998882 0.9140464 0.31427336 prediction 0.434740415434742 Functional Loss - TSPAN18 ENSG00000157570 CDS Human protein_coding chr11:44931315 chr11:44931317 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_83793 0 0 0 0 1 TSPAN18 chr11:44931256 3'AG 44931256 Downstream 62bp
chr7 107329537 107329537 1 + G A KIRC 107329534 + 107329514 107329554 41 CTTCCACCTGTGAGCTTGTTCTCGGAGATGCTGGCTGCATC CTTCCACCTGTGAGCTTGTTCTCAGAGATGCTGGCTGCATC < 41bp 0.789094383182882 0.571724262236201 0.08637369 0.06558308 prediction 0.434740241893363 Functional Loss - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107329534 chr7:107329537 synonymous SNV . 0 24 hm5C_associated_SNPs_83794 0 0 0 0 1 SLC26A4 chr7:107329498 3'AG 107329498 Downstream 40bp
chr1 159778167 159778167 1 + T C PCPG 159778166 + 159778146 159778186 41 CCGTGGCCAGTACAGCTGCTCTGGGCAGGTGATGTATATTC CCGTGGCCAGTACAGCTGCTCCGGGCAGGTGATGTATATTC < 41bp 0.773000278320083 0.555635272670446 0.25413075 0.5138572 prediction 0.434730011299274 Functional Loss - FCRL6 ENSG00000181036 CDS Human protein_coding chr1:159778166 chr1:159778167 synonymous SNV . 0 22 hm5C_associated_SNPs_83799 0 0 0 0 1 FCRL6 chr1:159778234 5'GT 159778234 Upstream 68bp
chr1 154233514 154233514 1 + A C BRCA 154233513 + 154233493 154233533 41 CTGCCTCCTGGCTACAGTTACACCAGCCTGCCATACTATAC CTGCCTCCTGGCTACAGTTACCCCAGCCTGCCATACTATAC < 41bp 0.717356600089852 0.464578261011859 0.1885927 0.24564692 prediction 0.434713200179705 Functional Loss - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154233513 chr1:154233514 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_83803 0 0 1 0 1 UBAP2L chr1:154233585 5'GT 154233585 Upstream 72bp
chr19 55489129 55489129 1 + G A UCEC 55489126 + 55489106 55489146 41 CCCTTTTTCTCCAGGGATAACACGGAAAGAACGACCACCTC CCCTTTTTCTCCAGGGATAACACAGAAAGAACGACCACCTC < 41bp 0.791863395931784 0.574508488779681 0.77773094 0.45866233 prediction 0.434709814304206 Functional Loss - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55489126 chr19:55489129 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_83805 0 0 0 0 2 NLRP2 chr19:55489120 3'AG 55489120 Downstream 10bp
chr19 55489129 55489129 1 + G A UCEC 55489126 + 55489106 55489146 41 CCCTTTTTCTCCAGGGATAACACGGAAAGAACGACCACCTC CCCTTTTTCTCCAGGGATAACACAGAAAGAACGACCACCTC < 41bp 0.791863395931784 0.574508488779681 0.77773094 0.45866233 prediction 0.434709814304206 Functional Loss - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55489126 chr19:55489129 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_83805 0 0 0 0 2 NLRP2 chr19:55489191 5'GT 55489191 Upstream 63bp
chr13 96443190 96443190 1 + G T SARC 96443188 + 96443168 96443208 41 GCAGAGAGCCAGCAAGGAGGCGGCGGCAACCCTTTCCACAG GCAGAGAGCCAGCAAGGAGGCGTCGGCAACCCTTTCCACAG < 41bp 0.901794993271592 0.684441113723777 0.7444049 0.22911263 prediction 0.434707759095629 Functional Loss - DNAJC3 ENSG00000102580 CDS Human protein_coding chr13:96443188 chr13:96443190 nonsynonymous SNV 0.642 2 23 hm5C_associated_SNPs_83807 0 0 1 0 1 DNAJC3 chr13:96443127 3'AG 96443127 Downstream 64bp
chr5 72359713 72359713 1 + C T UCEC 72359710 + 72359690 72359730 41 TGTAGGCACCATTGTCCCACCTCCGAGGCCTGCTTCCAGAC TGTAGGCACCATTGTCCCACCTCTGAGGCCTGCTTCCAGAC < 41bp 0.76533606177052 0.547982868559033 0.2066426 0.072125375 prediction 0.434706386422976 Functional Loss - FCHO2 ENSG00000157107 CDS Human protein_coding chr5:72359710 chr5:72359713 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_83808 0 0 1 0 2 FCHO2 chr5:72359668 3'AG 72359668 Downstream 46bp
chr5 72359713 72359713 1 + C T UCEC 72359710 + 72359690 72359730 41 TGTAGGCACCATTGTCCCACCTCCGAGGCCTGCTTCCAGAC TGTAGGCACCATTGTCCCACCTCTGAGGCCTGCTTCCAGAC < 41bp 0.76533606177052 0.547982868559033 0.2066426 0.072125375 prediction 0.434706386422976 Functional Loss - FCHO2 ENSG00000157107 CDS Human protein_coding chr5:72359710 chr5:72359713 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_83808 0 0 1 0 2 FCHO2 chr5:72359771 5'GT 72359771 Upstream 59bp
chr5 38258952 38258952 1 + A C COAD 38258951 + 38258931 38258971 41 CCGAGCGGCCATCCGAAAACCAGGTAATGCGCTCCTCCGCC CCGAGCGGCCATCCGAAAACCCGGTAATGCGCTCCTCCGCC < 41bp 0.811201269863891 0.593850099988724 0.9384216 0.9069016 prediction 0.434702339750334 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38258951 chr5:38258952 synonymous SNV . 0 22 hm5C_associated_SNPs_83809 0 0 0 0 1 EGFLAM chr5:38258953 5'GT 38258953 Upstream 2bp
chr16 83992923 83992923 1 + G A rs559047552 83992920 + 83992900 83992940 41 CTCTCCGGCTACACACCCTACACGAAGCCAGATGCCATCCA CTCTCCGGCTACACACCCTACACAAAGCCAGATGCCATCCA < 41bp 0.80349787423581 0.586146891873684 0.083920956 0.020955265 prediction 0.434701964724252 Functional Loss - OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83992920 chr16:83992923 synonymous SNV . 0 24 hm5C_associated_SNPs_83810 0 0 1 0 2 OSGIN1 chr16:83992865 3'AG 83992865 Downstream 59bp
chr16 83992923 83992923 1 + G A rs559047552 83992920 + 83992900 83992940 41 CTCTCCGGCTACACACCCTACACGAAGCCAGATGCCATCCA CTCTCCGGCTACACACCCTACACAAAGCCAGATGCCATCCA < 41bp 0.80349787423581 0.586146891873684 0.083920956 0.020955265 prediction 0.434701964724252 Functional Loss - OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83992920 chr16:83992923 synonymous SNV . 0 24 hm5C_associated_SNPs_83810 0 0 1 0 2 OSGIN1 chr16:83993001 5'GT 83993001 Upstream 79bp
chr1 15382643 15382643 1 + C T SKCM 15382640 + 15382620 15382660 41 GTCCCCAAGCGGCATTCCCTCGCCATGCCGGGCGAGACGGT GTCCCCAAGCGGCATTCCCTCGCTATGCCGGGCGAGACGGT < 41bp 0.717349595098949 0.494522021395217 0.8959669 0.29785186 prediction 0.434699190197898 Functional Loss - KAZN ENSG00000189337 CDS Human protein_coding chr1:15382640 chr1:15382643 synonymous SNV . 0 24 hm5C_associated_SNPs_83811 0 0 1 0 1 KAZN chr1:15382587 3'AG 15382587 Downstream 57bp
chr14 70459159 70459159 1 + G A SKCM 70459156 + 70459136 70459176 41 GACGGGTCTAAGCCGACACCCACGATGGAGACCCAGCCGGT GACGGGTCTAAGCCGACACCCACAATGGAGACCCAGCCGGT < 41bp 0.80920477989028 0.59185570647232 0.20821229 0.087898284 prediction 0.43469814683592 Functional Loss - SMOC1 ENSG00000198732 CDS Human protein_coding chr14:70459156 chr14:70459159 synonymous SNV . 0 24 hm5C_associated_SNPs_83812 0 0 1 0 2 SMOC1 chr14:70459134 3'AG 70459134 Downstream 26bp
chr14 70459159 70459159 1 + G A SKCM 70459156 + 70459136 70459176 41 GACGGGTCTAAGCCGACACCCACGATGGAGACCCAGCCGGT GACGGGTCTAAGCCGACACCCACAATGGAGACCCAGCCGGT < 41bp 0.80920477989028 0.59185570647232 0.20821229 0.087898284 prediction 0.43469814683592 Functional Loss - SMOC1 ENSG00000198732 CDS Human protein_coding chr14:70459156 chr14:70459159 synonymous SNV . 0 24 hm5C_associated_SNPs_83812 0 0 1 0 2 SMOC1 chr14:70459190 5'GT 70459190 Upstream 32bp
chr19 33293607 33293607 1 + C T rs11673502 33293605 + 33293585 33293625 41 CTCTTGGCCATCACCGATGCCACGTGTGTGATTCACTTCAG CTCTTGGCCATCACCGATGCCATGTGTGTGATTCACTTCAG < 41bp 0.717347867960529 0.430096211710079 0.35981458 0.4352312 prediction 0.434695735921058 Functional Loss - TDRD12;SLC7A9 ENSG00000173809 CDS Human protein_coding chr19:33293605 chr19:33293607 nonsynonymous SNV 0.859 3 23 hm5C_associated_SNPs_83814 0 0 0 0 2 TDRD12;SLC7A9 chr19:33293562 3'AG 33293562 Downstream 46bp
chr19 33293607 33293607 1 + C T rs11673502 33293605 + 33293585 33293625 41 CTCTTGGCCATCACCGATGCCACGTGTGTGATTCACTTCAG CTCTTGGCCATCACCGATGCCATGTGTGTGATTCACTTCAG < 41bp 0.717347867960529 0.430096211710079 0.35981458 0.4352312 prediction 0.434695735921058 Functional Loss - TDRD12;SLC7A9 ENSG00000173809 CDS Human protein_coding chr19:33293605 chr19:33293607 nonsynonymous SNV 0.859 3 23 hm5C_associated_SNPs_83814 0 0 0 0 2 TDRD12;SLC7A9 chr19:33293695 5'GT 33293695 Upstream 89bp
chr3 23960701 23960701 1 + C T COAD 23960699 + 23960679 23960719 41 TATTCTAGGAGCGAGCTGGACGCCACTGTGGGGCTCTGAGA TATTCTAGGAGCGAGCTGGACGTCACTGTGGGGCTCTGAGA < 41bp 0.717344562447917 0.426134193965721 0.28121603 0.3631033 prediction 0.434689124895833 Functional Loss - RPL15 ENSG00000174748 CDS Human protein_coding chr3:23960699 chr3:23960701 synonymous SNV . 0 23 hm5C_associated_SNPs_83815 0 0 1 0 2 RPL15 chr3:23960687 3'AG 23960687 Downstream 15bp
chr3 23960701 23960701 1 + C T COAD 23960699 + 23960679 23960719 41 TATTCTAGGAGCGAGCTGGACGCCACTGTGGGGCTCTGAGA TATTCTAGGAGCGAGCTGGACGTCACTGTGGGGCTCTGAGA < 41bp 0.717344562447917 0.426134193965721 0.28121603 0.3631033 prediction 0.434689124895833 Functional Loss - RPL15 ENSG00000174748 CDS Human protein_coding chr3:23960699 chr3:23960701 synonymous SNV . 0 23 hm5C_associated_SNPs_83815 0 0 1 0 2 RPL15 chr3:23960737 5'GT 23960737 Upstream 37bp
chr4 123305104 123305104 1 + G A SARC 123305101 + 123305081 123305121 41 ACAACTGGATGAACCTGAACCACGAATTTTAGAAACATCAG ACAACTGGATGAACCTGAACCACAAATTTTAGAAACATCAG < 41bp 0.722315527381439 0.5049747779425 0.05947113 0.09359333 prediction 0.434681498877877 Functional Loss - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123305101 chr4:123305104 nonsynonymous SNV 0.932 0 24 hm5C_associated_SNPs_83817 0 0 0 0 1 ADAD1 chr4:123305121 5'GT 123305121 Upstream 18bp
chr19 994248 994248 1 + G A rs200235925 994245 + 994225 994265 41 GCCAGGACCAGCTGCGCGTCCGTGTGACGGAGCTGGAGGAC GCCAGGACCAGCTGCGCGTCCGTATGACGGAGCTGGAGGAC < 41bp 0.785796082743117 0.568456218142563 0.31586918 0.34565198 prediction 0.434679729201108 Functional Loss - WDR18 ENSG00000065268 CDS Human protein_coding chr19:994245 chr19:994248 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_83818 0 0 1 0 1 WDR18 chr19:994212 3'AG 994212 Downstream 37bp
chr1 198711119 198711119 1 + G T LUAD 198711117 + 198711097 198711137 41 AGAAGGAGAGTGAATGCCTTCAGCAATTTCTTCAGTGGTCC AGAAGGAGAGTGAATGCCTTCATCAATTTCTTCAGTGGTCC < 41bp 0.717338326951968 0.393904915439794 0.20223531 0.050394952 prediction 0.434676653903936 Functional Loss - PTPRC ENSG00000081237 CDS Human protein_coding chr1:198711117 chr1:198711119 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_83820 0 0 1 0 1 PTPRC chr1:198711155 5'GT 198711155 Upstream 37bp
chr21 45833850 45833850 1 + G A UCEC 45833847 + 45833827 45833867 41 CCTAAGTGCCCCGAGAGCGACGCGACGCAGCAGAGGCCGGC CCTAAGTGCCCCGAGAGCGACGCAACGCAGCAGAGGCCGGC < 41bp 0.785039885133771 0.56770557578641 0.25431103 0.21043643 prediction 0.434668618694722 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45833847 chr21:45833850 synonymous SNV . 0 24 hm5C_associated_SNPs_83822 0 0 0 0 1 TRPM2 chr21:45833774 3'AG 45833774 Downstream 77bp
chr2 27016122 27016122 1 + G T LUAD 27016120 + 27016100 27016140 41 GTGCAACTGGCCCGGAGGATCCGGGGCCTTGAGGAGGGACT GTGCAACTGGCCCGGAGGATCCTGGGCCTTGAGGAGGGACT < 41bp 0.717332563289242 0.352720973066032 0.9062766 0.24390376 prediction 0.434665126578485 Functional Loss - CENPA ENSG00000115163 CDS Human protein_coding chr2:27016120 chr2:27016122 nonsynonymous SNV 0.841 4 23 hm5C_associated_SNPs_83825 0 0 1 1 1 CENPA chr2:27016194 5'GT 27016194 Upstream 73bp
chr8 95690545 95690545 1 + C T UCEC 95690542 + 95690522 95690562 41 ACGAGCACTGCAGCCCTCCACAGCGTACTACCCAGCAGGCA ACGAGCACTGCAGCCCTCCACAGTGTACTACCCAGCAGGCA < 41bp 0.719663179273702 0.502331132841858 0.3692097 0.27010506 prediction 0.434664092863689 Functional Loss - ESRP1 ENSG00000104413 CDS Human protein_coding chr8:95690542 chr8:95690545 nonsynonymous SNV 0.966 2 24 hm5C_associated_SNPs_83826 0 0 0 0 1 ESRP1 chr8:95690599 5'GT 95690599 Upstream 55bp
chr9 37429744 37429744 1 + G A rs12002324 37429741 + 37429721 37429761 41 TGCTCTAGGCCAGGCCATTGCTCGGCGTCTGAAACCATTCG TGCTCTAGGCCAGGCCATTGCTCAGCGTCTGAAACCATTCG < 41bp 0.80311605765715 0.585785634908725 0.7542422 0.4835907 prediction 0.434660845496851 Functional Loss - GRHPR ENSG00000137106 CDS Human protein_coding chr9:37429741 chr9:37429744 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_83827 0 0 1 0 2 GRHPR chr9:37429729 3'AG 37429729 Downstream 16bp
chr9 37429744 37429744 1 + G A rs12002324 37429741 + 37429721 37429761 41 TGCTCTAGGCCAGGCCATTGCTCGGCGTCTGAAACCATTCG TGCTCTAGGCCAGGCCATTGCTCAGCGTCTGAAACCATTCG < 41bp 0.80311605765715 0.585785634908725 0.7542422 0.4835907 prediction 0.434660845496851 Functional Loss - GRHPR ENSG00000137106 CDS Human protein_coding chr9:37429741 chr9:37429744 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_83827 0 0 1 0 2 GRHPR chr9:37429833 5'GT 37429833 Upstream 90bp
chr8 126019705 126019705 1 + G T COAD 126019702 + 126019682 126019722 41 GTTGTGATGGGAGTTCAGTACAAGGATAAAGAGACTGGAGA GTTGTGATGGGAGTTCAGTACAATGATAAAGAGACTGGAGA < 41bp 0.717327067729046 0.323254584986496 0.5998373 0.26670897 prediction 0.434654135458092 Functional Loss - SQLE ENSG00000104549 CDS Human protein_coding chr8:126019702 chr8:126019705 nonsynonymous SNV 0.835 0 24 hm5C_associated_SNPs_83829 0 0 1 0 2 SQLE chr8:126019633 3'AG 126019633 Downstream 73bp
chr8 126019705 126019705 1 + G T COAD 126019702 + 126019682 126019722 41 GTTGTGATGGGAGTTCAGTACAAGGATAAAGAGACTGGAGA GTTGTGATGGGAGTTCAGTACAATGATAAAGAGACTGGAGA < 41bp 0.717327067729046 0.323254584986496 0.5998373 0.26670897 prediction 0.434654135458092 Functional Loss - SQLE ENSG00000104549 CDS Human protein_coding chr8:126019702 chr8:126019705 nonsynonymous SNV 0.835 0 24 hm5C_associated_SNPs_83829 0 0 1 0 2 SQLE chr8:126019729 5'GT 126019729 Upstream 25bp
chr12 54447762 54447762 1 + C T LUSC 54447759 + 54447739 54447779 41 CTACATCGATCCGAAATTTCCTCCATGCGAAGAATATTCGC CTACATCGATCCGAAATTTCCTCTATGCGAAGAATATTCGC < 41bp 0.756217766500945 0.538890705109747 0.96502125 0.94411325 prediction 0.434654122782396 Functional Loss - HOXC4 ENSG00000198353;ENSG00000273266 CDS Human other chr12:54447759 chr12:54447762 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_83830 0 0 1 0 1 HOXC4 chr12:54447701 3'AG 54447701 Downstream 62bp
chr1 2235368 2235368 1 + C T UCEC 2235365 + 2235345 2235385 41 GCAGAAGGTTGTGAGCAGCCCTCCGTGTGCCGCCGCCGTCT GCAGAAGGTTGTGAGCAGCCCTCTGTGTGCCGCCGCCGTCT < 41bp 0.717325213062279 0.499641929560106 0.84345686 0.48524398 prediction 0.434650426124558 Functional Loss - SKI ENSG00000157933 CDS Human protein_coding chr1:2235365 chr1:2235368 nonsynonymous SNV 0.007 4 24 hm5C_associated_SNPs_83832 1 0 1 0 1 SKI chr1:2235279 3'AG 2235279 Downstream 90bp
chr8 39068779 39068779 1 + C T rs202074832 39068776 + 39068756 39068796 41 GCCACAAATGCAAAAAAAATCTCCGAAACCAGTCTGTGGCA GCCACAAATGCAAAAAAAATCTCTGAAACCAGTCTGTGGCA < 41bp 0.719799601345694 0.502474964791436 0.35586375 0.14082393 prediction 0.434649273108516 Functional Loss - ADAM32 ENSG00000197140 CDS Human protein_coding chr8:39068776 chr8:39068779 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_83833 0 0 1 0 1 ADAM32 chr8:39068843 5'GT 39068843 Upstream 65bp
chr16 57714199 57714199 1 + T C LIHC 57714198 + 57714178 57714218 41 GACCACTGGAGACTGGTCTTCTGAGGGCTGCTCCACGGAGG GACCACTGGAGACTGGTCTTCCGAGGGCTGCTCCACGGAGG < 41bp 0.783126978025636 0.565810168530729 0.7138386 0.9154786 prediction 0.434633618989814 Functional Loss - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714198 chr16:57714199 synonymous SNV . 0 22 hm5C_associated_SNPs_83838 0 0 1 0 2 ADGRG3 chr16:57714177 3'AG 57714177 Downstream 23bp
chr16 57714199 57714199 1 + T C LIHC 57714198 + 57714178 57714218 41 GACCACTGGAGACTGGTCTTCTGAGGGCTGCTCCACGGAGG GACCACTGGAGACTGGTCTTCCGAGGGCTGCTCCACGGAGG < 41bp 0.783126978025636 0.565810168530729 0.7138386 0.9154786 prediction 0.434633618989814 Functional Loss - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714198 chr16:57714199 synonymous SNV . 0 22 hm5C_associated_SNPs_83838 0 0 1 0 2 ADGRG3 chr16:57714277 5'GT 57714277 Upstream 79bp
chr19 14674017 14674017 1 + G T SARC 14674015 + 14673995 14674035 41 CCCTGCGCCTGTGCTTCCCCCAGGTGGAGCCCCACGCCACC CCCTGCGCCTGTGCTTCCCCCATGTGGAGCCCCACGCCACC < 41bp 0.717312802246145 0.355044989797106 0.9319228 0.7810573 prediction 0.434625604492291 Functional Loss - TECR ENSG00000099797;ENSG00000099797 exonic;splicing Human protein_coding chr19:14674015 chr19:14674017 nonsynonymous SNV 0.811 0 23 hm5C_associated_SNPs_83841 0 0 1 0 3 TECR chr19:14673953 3'AG 14673953 Downstream 65bp
chr19 14674017 14674017 1 + G T SARC 14674015 + 14673995 14674035 41 CCCTGCGCCTGTGCTTCCCCCAGGTGGAGCCCCACGCCACC CCCTGCGCCTGTGCTTCCCCCATGTGGAGCCCCACGCCACC < 41bp 0.717312802246145 0.355044989797106 0.9319228 0.7810573 prediction 0.434625604492291 Functional Loss - TECR ENSG00000099797;ENSG00000099797 exonic;splicing Human protein_coding chr19:14674015 chr19:14674017 nonsynonymous SNV 0.811 0 23 hm5C_associated_SNPs_83841 0 0 1 0 3 TECR chr19:14673986 3'AG 14673986 Downstream 32bp
chr19 14674017 14674017 1 + G T SARC 14674015 + 14673995 14674035 41 CCCTGCGCCTGTGCTTCCCCCAGGTGGAGCCCCACGCCACC CCCTGCGCCTGTGCTTCCCCCATGTGGAGCCCCACGCCACC < 41bp 0.717312802246145 0.355044989797106 0.9319228 0.7810573 prediction 0.434625604492291 Functional Loss - TECR ENSG00000099797;ENSG00000099797 exonic;splicing Human protein_coding chr19:14674015 chr19:14674017 nonsynonymous SNV 0.811 0 23 hm5C_associated_SNPs_83841 0 0 1 0 3 TECR chr19:14674069 5'GT 14674069 Upstream 53bp
chr6 160196340 160196340 1 + G A ESCA 160196337 + 160196317 160196357 41 TGTACCAGTTTTGGTGTCAACTAGAAAAGGTGAGTATATCA TGTACCAGTTTTGGTGTCAACTAAAAAAGGTGAGTATATCA < 41bp 0.732584834554387 0.515272633776098 0.19944388 0.13611272 prediction 0.434624401556579 Functional Loss - ACAT2 ENSG00000120437 CDS Human protein_coding chr6:160196337 chr6:160196340 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_83842 0 0 1 0 1 ACAT2 chr6:160196345 5'GT 160196345 Upstream 6bp
chr14 39583588 39583588 1 + C T BLCA 39583586 + 39583566 39583606 41 CGCAGTGGAAGAGTTGATGCCTCGGCTATTGCCGGTAGAGC CGCAGTGGAAGAGTTGATGCCTTGGCTATTGCCGGTAGAGC < 41bp 0.813996058740251 0.596685576194676 0.1381442 0.09832615 prediction 0.43462096509115 Functional Loss - GEMIN2 ENSG00000092208 CDS Human protein_coding chr14:39583586 chr14:39583588 nonsynonymous SNV 0.945 4 23 hm5C_associated_SNPs_83843 0 0 1 0 1 GEMIN2 chr14:39583679 5'GT 39583679 Upstream 92bp
chr2 69002542 69002542 1 + C T COAD 69002540 + 69002520 69002560 41 TACTACAAGGATGAAGAGGACACGAAGCCCCAGGTACCAGC TACTACAAGGATGAAGAGGACATGAAGCCCCAGGTACCAGC < 41bp 0.846495426566082 0.62919482792952 0.13980457 0.17009756 prediction 0.434601197273124 Functional Loss - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69002540 chr2:69002542 nonsynonymous SNV 0.696 1 23 hm5C_associated_SNPs_83847 0 0 0 0 1 ARHGAP25 chr2:69002552 5'GT 69002552 Upstream 11bp
chr11 120983858 120983858 1 + G T LUAD 120983855 + 120983835 120983875 41 TTCAATTATTACGAAATCAACTGGACCACGGGGACGGCGAG TTCAATTATTACGAAATCAACTGTACCACGGGGACGGCGAG < 41bp 0.717295280521206 0.318354681987325 0.20765457 0.2557772 prediction 0.434590561042412 Functional Loss - TECTA ENSG00000109927 CDS Human protein_coding chr11:120983855 chr11:120983858 nonsynonymous SNV 0.984 4 24 hm5C_associated_SNPs_83849 0 0 0 0 2 TECTA chr11:120983781 3'AG 120983781 Downstream 78bp
chr11 120983858 120983858 1 + G T LUAD 120983855 + 120983835 120983875 41 TTCAATTATTACGAAATCAACTGGACCACGGGGACGGCGAG TTCAATTATTACGAAATCAACTGTACCACGGGGACGGCGAG < 41bp 0.717295280521206 0.318354681987325 0.20765457 0.2557772 prediction 0.434590561042412 Functional Loss - TECTA ENSG00000109927 CDS Human protein_coding chr11:120983855 chr11:120983858 nonsynonymous SNV 0.984 4 24 hm5C_associated_SNPs_83849 0 0 0 0 2 TECTA chr11:120983918 5'GT 120983918 Upstream 61bp
chr20 19565664 19565664 1 + G A SKCM 19565661 + 19565641 19565681 41 TGGGGCCACATTCATGGCAGCGGGAAGTTCGGCCCCAGAGC TGGGGCCACATTCATGGCAGCGGAAAGTTCGGCCCCAGAGC < 41bp 0.786407021543645 0.569115899513132 0.91683316 0.85602313 prediction 0.434582244061026 Functional Loss - SLC24A3 ENSG00000185052 CDS Human protein_coding chr20:19565661 chr20:19565664 nonsynonymous SNV 0.972 4 24 hm5C_associated_SNPs_83853 0 0 0 0 2 SLC24A3 chr20:19565615 3'AG 19565615 Downstream 50bp
chr20 19565664 19565664 1 + G A SKCM 19565661 + 19565641 19565681 41 TGGGGCCACATTCATGGCAGCGGGAAGTTCGGCCCCAGAGC TGGGGCCACATTCATGGCAGCGGAAAGTTCGGCCCCAGAGC < 41bp 0.786407021543645 0.569115899513132 0.91683316 0.85602313 prediction 0.434582244061026 Functional Loss - SLC24A3 ENSG00000185052 CDS Human protein_coding chr20:19565661 chr20:19565664 nonsynonymous SNV 0.972 4 24 hm5C_associated_SNPs_83853 0 0 0 0 2 SLC24A3 chr20:19565699 5'GT 19565699 Upstream 36bp
chr22 25264413 25264413 1 + G A SKCM 25264410 + 25264390 25264430 41 AGGCCGCCCTTCCGCTTCCCCAAGGGCGGGCACCTCCTGCA AGGCCGCCCTTCCGCTTCCCCAAAGGCGGGCACCTCCTGCA < 41bp 0.814704155973031 0.597418514892218 0.9093379 0.9059421 prediction 0.434571282161627 Functional Loss - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25264410 chr22:25264413 synonymous SNV . 0 24 hm5C_associated_SNPs_83855 0 0 0 0 2 SGSM1 chr22:25264343 3'AG 25264343 Downstream 71bp
chr22 25264413 25264413 1 + G A SKCM 25264410 + 25264390 25264430 41 AGGCCGCCCTTCCGCTTCCCCAAGGGCGGGCACCTCCTGCA AGGCCGCCCTTCCGCTTCCCCAAAGGCGGGCACCTCCTGCA < 41bp 0.814704155973031 0.597418514892218 0.9093379 0.9059421 prediction 0.434571282161627 Functional Loss - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25264410 chr22:25264413 synonymous SNV . 0 24 hm5C_associated_SNPs_83855 0 0 0 0 2 SGSM1 chr22:25264506 5'GT 25264506 Upstream 94bp
chr16 85689518 85689518 1 + G A STAD 85689515 + 85689495 85689535 41 GAGCGCATGTCTGGCCTCAGCGCGGAGAGGTAAGTGCGTCT GAGCGCATGTCTGGCCTCAGCGCAGAGAGGTAAGTGCGTCT < 41bp 0.809015557367227 0.591729978955634 0.8798058 0.44325197 prediction 0.434571156823186 Functional Loss - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85689515 chr16:85689518 synonymous SNV . 0 24 hm5C_associated_SNPs_83856 0 0 1 0 1 GSE1 chr16:85689523 5'GT 85689523 Upstream 6bp
chr7 30655629 30655629 1 + C T UCEC 30655626 + 30655606 30655646 41 TATTCAGCAAAAGCCCAGGTCAGCGGACAGTCCGCTCGGAA TATTCAGCAAAAGCCCAGGTCAGTGGACAGTCCGCTCGGAA < 41bp 0.732907716693307 0.515625699276717 0.7479406 0.34039634 prediction 0.43456403483318 Functional Loss - GARS ENSG00000106105 CDS Human protein_coding chr7:30655626 chr7:30655629 synonymous SNV . 0 24 hm5C_associated_SNPs_83858 0 0 1 0 1 GARS chr7:30655674 5'GT 30655674 Upstream 46bp
chr16 89629313 89629313 1 + C T UCEC 89629311 + 89629291 89629331 41 GGTCTATAAGAAGGAGAAAGCTCGAGTCATCACTGAGGAAG GGTCTATAAGAAGGAGAAAGCTTGAGTCATCACTGAGGAAG < 41bp 0.840827229693006 0.623548377656805 0.16605416 0.093413115 prediction 0.434557704072402 Functional Loss - RPL13 ENSG00000167526 CDS Human protein_coding chr16:89629311 chr16:89629313 stopgain 0.654 0 23 hm5C_associated_SNPs_83861 0 0 1 0 1 RPL13 chr16:89629292 3'AG 89629292 Downstream 22bp
chr20 21346218 21346218 1 + G T PAAD 21346216 + 21346196 21346236 41 TTTTTAAATGGTCAGAAAGCCAGCAGCAGTACTGAAACCTA TTTTTAAATGGTCAGAAAGCCATCAGCAGTACTGAAACCTA < 41bp 0.717276493738432 0.384674230639783 0.35989055 0.08062068 prediction 0.434552987476864 Functional Loss - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21346216 chr20:21346218 nonsynonymous SNV 0.893 0 23 hm5C_associated_SNPs_83864 0 0 1 0 1 XRN2 chr20:21346211 3'AG 21346211 Downstream 8bp
chr9 4544640 4544640 1 + T C rs142903137 4544639 + 4544619 4544659 41 GAAATTCTACTTTGCTTTTCCTGGAGAAATTCTAATGCGGA GAAATTCTACTTTGCTTTTCCCGGAGAAATTCTAATGCGGA < 41bp 0.717275764087576 0.463466167856826 0.26167053 0.53486097 prediction 0.434551528175152 Functional Loss - SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4544639 chr9:4544640 synonymous SNV . 0 22 hm5C_associated_SNPs_83865 1 0 0 0 2 SLC1A1 chr9:4544567 3'AG 4544567 Downstream 74bp
chr9 4544640 4544640 1 + T C rs142903137 4544639 + 4544619 4544659 41 GAAATTCTACTTTGCTTTTCCTGGAGAAATTCTAATGCGGA GAAATTCTACTTTGCTTTTCCCGGAGAAATTCTAATGCGGA < 41bp 0.717275764087576 0.463466167856826 0.26167053 0.53486097 prediction 0.434551528175152 Functional Loss - SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4544639 chr9:4544640 synonymous SNV . 0 22 hm5C_associated_SNPs_83865 1 0 0 0 2 SLC1A1 chr9:4544707 5'GT 4544707 Upstream 68bp
chr14 55817179 55817179 1 + G C LUSC 55817175 + 55817155 55817195 41 CGGAAGTCAGCAGGGAAACGCAGAGAACTCCTATGAACCAC CGGAAGTCAGCAGGGAAACGCAGACAACTCCTATGAACCAC < 41bp 0.7172754964236 0.422705479067158 0.8281472 0.13561636 prediction 0.4345509928472 Functional Loss - FBXO34 ENSG00000178974 CDS Human protein_coding chr14:55817175 chr14:55817179 nonsynonymous SNV 0.124 1 25 hm5C_associated_SNPs_83866 0 0 1 0 1 FBXO34 chr14:55817099 3'AG 55817099 Downstream 81bp
chr12 53819613 53819613 1 + C T LUSC 53819611 + 53819591 53819631 41 ACGAACTTCCAGGCCTACAGCACGACCACATTGTCCGATTT ACGAACTTCCAGGCCTACAGCATGACCACATTGTCCGATTT < 41bp 0.853774137463204 0.636499374426573 0.06943691 0.039018273 prediction 0.434549526073261 Functional Loss - AMHR2 ENSG00000135409 CDS Human protein_coding chr12:53819611 chr12:53819613 synonymous SNV . 0 23 hm5C_associated_SNPs_83867 0 0 0 0 1 AMHR2 chr12:53819703 5'GT 53819703 Upstream 91bp
chr9 140084339 140084339 1 + G A rs566918824 140084336 + 140084316 140084356 41 ACCAAGGCTACAGCCCCAGACCAGAAAAGTAGCGGCGGCAG ACCAAGGCTACAGCCCCAGACCAAAAAAGTAGCGGCGGCAG < 41bp 0.752363604548138 0.535097468096254 0.1581235 0.055034608 prediction 0.434532272903767 Functional Loss - SSNA1 ENSG00000176101 CDS Human protein_coding chr9:140084336 chr9:140084339 synonymous SNV . 0 24 hm5C_associated_SNPs_83872 0 0 1 0 1 SSNA1 chr9:140084259 3'AG 140084259 Downstream 81bp
chr1 160318821 160318821 1 + G A GBM 160318818 + 160318798 160318838 41 GTGGAGACACAGGGGTTATCCACGTAGTAGAGAAAGAGGAG GTGGAGACACAGGGGTTATCCACATAGTAGAGAAAGAGGAG < 41bp 0.774360856982592 0.557098951921636 0.5385376 0.24003398 prediction 0.434523810121913 Functional Loss - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160318818 chr1:160318821 nonsynonymous SNV 0.758 2 24 hm5C_associated_SNPs_83873 0 0 1 2 2 NCSTN chr1:160318789 3'AG 160318789 Downstream 33bp
chr1 160318821 160318821 1 + G A GBM 160318818 + 160318798 160318838 41 GTGGAGACACAGGGGTTATCCACGTAGTAGAGAAAGAGGAG GTGGAGACACAGGGGTTATCCACATAGTAGAGAAAGAGGAG < 41bp 0.774360856982592 0.557098951921636 0.5385376 0.24003398 prediction 0.434523810121913 Functional Loss - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160318818 chr1:160318821 nonsynonymous SNV 0.758 2 24 hm5C_associated_SNPs_83873 0 0 1 2 2 NCSTN chr1:160318912 5'GT 160318912 Upstream 92bp
chr21 40762689 40762689 1 + G A HNSC 40762686 + 40762666 40762706 41 ATGAGAGCGGAGATCCAGGACATGAAGCAGGAGCTCTCCAC ATGAGAGCGGAGATCCAGGACATAAAGCAGGAGCTCTCCAC < 41bp 0.763013997302569 0.545755310507703 0.07914871 0.04872459 prediction 0.434517373589731 Functional Loss - WRB;WRB-SH3BGR ENSG00000182093 CDS Human protein_coding chr21:40762686 chr21:40762689 nonsynonymous SNV 0.611 4 24 hm5C_associated_SNPs_83875 0 0 1 0 1 WRB;WRB-SH3BGR chr21:40762624 3'AG 40762624 Downstream 66bp
chr3 404928 404928 1 + G A LUAD 404925 + 404905 404945 41 AGGTGGAAGAAGTGAAACCCCTGGAGGGCAGGCGGTATCAT AGGTGGAAGAAGTGAAACCCCTGAAGGGCAGGCGGTATCAT < 41bp 0.717257858953352 0.485346416540759 0.16749316 0.14183399 prediction 0.434515717906704 Functional Loss - CHL1 ENSG00000134121 CDS Human protein_coding chr3:404925 chr3:404928 nonsynonymous SNV 0.595 0 24 hm5C_associated_SNPs_83877 0 0 0 0 1 CHL1 chr3:404900 3'AG 404900 Downstream 29bp
chr3 404927 404927 1 + G T LUAD 404925 + 404905 404945 41 AGGTGGAAGAAGTGAAACCCCTGGAGGGCAGGCGGTATCAT AGGTGGAAGAAGTGAAACCCCTTGAGGGCAGGCGGTATCAT < 41bp 0.717257858953352 0.380410179168402 0.16749316 0.08488107 prediction 0.434515717906704 Functional Loss - CHL1 ENSG00000134121 CDS Human protein_coding chr3:404925 chr3:404927 synonymous SNV . 0 23 hm5C_associated_SNPs_83878 0 0 0 0 1 CHL1 chr3:404900 3'AG 404900 Downstream 28bp
chr16 20477039 20477039 1 + C T TGCT 20477036 + 20477016 20477056 41 TGGTGGCTGGTGATCCTGGGCTGCATTCGAGCAGGTTGGTA TGGTGGCTGGTGATCCTGGGCTGTATTCGAGCAGGTTGGTA < 41bp 0.732849184205073 0.515591524111728 0.24797797 0.27480322 prediction 0.43451532018669 Functional Loss - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20477036 chr16:20477039 synonymous SNV . 0 24 hm5C_associated_SNPs_83879 0 0 0 0 1 ACSM2A chr16:20477049 5'GT 20477049 Upstream 11bp
chr8 145732004 145732004 1 + G A READ 145732001 + 145731981 145732021 41 GCGCCATGTACTCCTTCCCGCGCGTGCAGCTGCCCCCGCGG GCGCCATGTACTCCTTCCCGCGCATGCAGCTGCCCCCGCGG < 41bp 0.812608637940511 0.595355515801333 0.6618687 0.3760341 prediction 0.434506244278356 Functional Loss - GPT ENSG00000167701 CDS Human protein_coding chr8:145732001 chr8:145732004 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_83880 0 0 0 0 1 GPT chr8:145732039 5'GT 145732039 Upstream 36bp
chrX 15833865 15833865 1 + C T UCEC 15833862 + 15833842 15833882 41 TCTTATTAAGAGCATGTTTACGACGTTTGGAATGGAGCAGT TCTTATTAAGAGCATGTTTACGATGTTTGGAATGGAGCAGT < 41bp 0.724095165850568 0.506848540999034 0.5393962 0.35166645 prediction 0.43449324970307 Functional Loss - ZRSR2 ENSG00000169249 CDS Human protein_coding chrX:15833862 chrX:15833865 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_83884 0 0 0 0 1 ZRSR2 chrX:15833800 3'AG 15833800 Downstream 66bp
chr2 111789239 111789239 1 + G A SKCM 111789236 + 111789216 111789256 41 AAGGAGGATTTTTTCCATGCCTGGAACTCGTGTCTGCACCA AAGGAGGATTTTTTCCATGCCTGAAACTCGTGTCTGCACCA < 41bp 0.717245911204214 0.478602500051122 0.50068074 0.40233678 prediction 0.434491822408427 Functional Loss - ACOXL ENSG00000153093 CDS Human protein_coding chr2:111789236 chr2:111789239 stopgain 0.759 1 24 hm5C_associated_SNPs_83886 0 0 0 0 2 ACOXL chr2:111789204 3'AG 111789204 Downstream 36bp
chr2 111789239 111789239 1 + G A SKCM 111789236 + 111789216 111789256 41 AAGGAGGATTTTTTCCATGCCTGGAACTCGTGTCTGCACCA AAGGAGGATTTTTTCCATGCCTGAAACTCGTGTCTGCACCA < 41bp 0.717245911204214 0.478602500051122 0.50068074 0.40233678 prediction 0.434491822408427 Functional Loss - ACOXL ENSG00000153093 CDS Human protein_coding chr2:111789236 chr2:111789239 stopgain 0.759 1 24 hm5C_associated_SNPs_83886 0 0 0 0 2 ACOXL chr2:111789291 5'GT 111789291 Upstream 53bp
chr9 137293647 137293647 1 + G A COAD 137293644 + 137293624 137293664 41 AACGGCATGGGCCCGCCTTTCTCGGTCATCAGCTCCCCCAT AACGGCATGGGCCCGCCTTTCTCAGTCATCAGCTCCCCCAT < 41bp 0.773451919811945 0.556208556948689 0.23950124 0.04051557 prediction 0.434486725726512 Functional Loss - RXRA ENSG00000186350 CDS Human protein_coding chr9:137293644 chr9:137293647 synonymous SNV . 0 24 hm5C_associated_SNPs_83888 0 0 1 0 1 RXRA chr9:137293728 5'GT 137293728 Upstream 82bp
chr16 67902251 67902251 1 + G A BRCA 67902248 + 67902228 67902268 41 CTGTGCCTTTTTCAGATTGACGCGTCATGCCTTACGTGGGA CTGTGCCTTTTTCAGATTGACGCATCATGCCTTACGTGGGA < 41bp 0.717242402972198 0.473986542245927 0.33368826 0.2755191 prediction 0.434484805944397 Functional Loss - NUTF2 ENSG00000102898 CDS Human protein_coding chr16:67902248 chr16:67902251 synonymous SNV . 0 24 hm5C_associated_SNPs_83890 0 0 1 0 2 NUTF2 chr16:67902243 3'AG 67902243 Downstream 9bp
chr16 67902251 67902251 1 + G A BRCA 67902248 + 67902228 67902268 41 CTGTGCCTTTTTCAGATTGACGCGTCATGCCTTACGTGGGA CTGTGCCTTTTTCAGATTGACGCATCATGCCTTACGTGGGA < 41bp 0.717242402972198 0.473986542245927 0.33368826 0.2755191 prediction 0.434484805944397 Functional Loss - NUTF2 ENSG00000102898 CDS Human protein_coding chr16:67902248 chr16:67902251 synonymous SNV . 0 24 hm5C_associated_SNPs_83890 0 0 1 0 2 NUTF2 chr16:67902314 5'GT 67902314 Upstream 64bp
chr16 67902250 67902250 1 + C T UCEC 67902248 + 67902228 67902268 41 CTGTGCCTTTTTCAGATTGACGCGTCATGCCTTACGTGGGA CTGTGCCTTTTTCAGATTGACGTGTCATGCCTTACGTGGGA < 41bp 0.717242402972198 0.442333726880458 0.33368826 0.52384776 prediction 0.434484805944397 Functional Loss - NUTF2 ENSG00000102898 CDS Human protein_coding chr16:67902248 chr16:67902250 nonsynonymous SNV 0.872 1 23 hm5C_associated_SNPs_83891 0 0 1 0 2 NUTF2 chr16:67902243 3'AG 67902243 Downstream 8bp
chr16 67902250 67902250 1 + C T UCEC 67902248 + 67902228 67902268 41 CTGTGCCTTTTTCAGATTGACGCGTCATGCCTTACGTGGGA CTGTGCCTTTTTCAGATTGACGTGTCATGCCTTACGTGGGA < 41bp 0.717242402972198 0.442333726880458 0.33368826 0.52384776 prediction 0.434484805944397 Functional Loss - NUTF2 ENSG00000102898 CDS Human protein_coding chr16:67902248 chr16:67902250 nonsynonymous SNV 0.872 1 23 hm5C_associated_SNPs_83891 0 0 1 0 2 NUTF2 chr16:67902314 5'GT 67902314 Upstream 65bp
chr19 35610100 35610100 1 + C T rs568277404 35610098 + 35610078 35610118 41 GTTTCACCCAGTCCCCACTCCACGGTGCAGCTGCGGCTTAT GTTTCACCCAGTCCCCACTCCATGGTGCAGCTGCGGCTTAT < 41bp 0.806437881616971 0.589200066198151 0.878721 0.77168226 prediction 0.43447563083764 Functional Loss - FXYD3 ENSG00000089356 CDS Human protein_coding chr19:35610098 chr19:35610100 synonymous SNV . 0 23 hm5C_associated_SNPs_83893 0 0 0 0 2 FXYD3 chr19:35610072 3'AG 35610072 Downstream 29bp
chr19 35610100 35610100 1 + C T rs568277404 35610098 + 35610078 35610118 41 GTTTCACCCAGTCCCCACTCCACGGTGCAGCTGCGGCTTAT GTTTCACCCAGTCCCCACTCCATGGTGCAGCTGCGGCTTAT < 41bp 0.806437881616971 0.589200066198151 0.878721 0.77168226 prediction 0.43447563083764 Functional Loss - FXYD3 ENSG00000089356 CDS Human protein_coding chr19:35610098 chr19:35610100 synonymous SNV . 0 23 hm5C_associated_SNPs_83893 0 0 0 0 2 FXYD3 chr19:35610155 5'GT 35610155 Upstream 56bp
chrX 99854149 99854149 1 + A C rs34184212 99854148 + 99854128 99854168 41 GACCCGTCACGCCAGACAAGCAAGTGAGGAAGAACTTCCAA GACCCGTCACGCCAGACAAGCCAGTGAGGAAGAACTTCCAA < 41bp 0.807636167153391 0.590398382648341 0.90638375 0.23593768 prediction 0.4344755690101 Functional Loss - TNMD ENSG00000000005 CDS Human protein_coding chrX:99854148 chrX:99854149 synonymous SNV . 0 22 hm5C_associated_SNPs_83894 0 0 0 0 1 TNMD chrX:99854179 5'GT 99854179 Upstream 31bp
chr12 57882850 57882850 1 + T C UCEC 57882849 + 57882829 57882869 41 CTAAGGTCCCTGTCTTGCAGCTGGATAGCGGCAACTACCTC CTAAGGTCCCTGTCTTGCAGCCGGATAGCGGCAACTACCTC < 41bp 0.800622457616926 0.583391011124592 0.17354804 0.37419128 prediction 0.434462892984668 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57882849 chr12:57882850 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_83898 0 0 1 11 2 MARS chr12:57882802 3'AG 57882802 Downstream 49bp
chr12 57882850 57882850 1 + T C UCEC 57882849 + 57882829 57882869 41 CTAAGGTCCCTGTCTTGCAGCTGGATAGCGGCAACTACCTC CTAAGGTCCCTGTCTTGCAGCCGGATAGCGGCAACTACCTC < 41bp 0.800622457616926 0.583391011124592 0.17354804 0.37419128 prediction 0.434462892984668 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57882849 chr12:57882850 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_83898 0 0 1 11 2 MARS chr12:57882892 5'GT 57882892 Upstream 43bp
chr2 54852008 54852008 1 + A C LUAD 54852007 + 54851987 54852027 41 TGCGGAATGAGCTCATAAGACAGGAGAAACTGGAACAGCTC TGCGGAATGAGCTCATAAGACCGGAGAAACTGGAACAGCTC < 41bp 0.803743066785048 0.586512990250054 0.6711737 0.3619442 prediction 0.434460153069988 Functional Loss - SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54852007 chr2:54852008 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_83899 0 0 1 0 2 SPTBN1 chr2:54851941 3'AG 54851941 Downstream 68bp
chr2 54852008 54852008 1 + A C LUAD 54852007 + 54851987 54852027 41 TGCGGAATGAGCTCATAAGACAGGAGAAACTGGAACAGCTC TGCGGAATGAGCTCATAAGACCGGAGAAACTGGAACAGCTC < 41bp 0.803743066785048 0.586512990250054 0.6711737 0.3619442 prediction 0.434460153069988 Functional Loss - SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54852007 chr2:54852008 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_83899 0 0 1 0 2 SPTBN1 chr2:54852099 5'GT 54852099 Upstream 92bp
chr18 77107879 77107879 1 + T C UCEC 77107878 + 77107858 77107898 41 GCTACAAGAGGTCGGCGGCACTCGGCCAGTTCGTCATGCAC GCTACAAGAGGTCGGCGGCACCCGGCCAGTTCGTCATGCAC < 41bp 0.717229021038616 0.460357319206794 0.5802916 0.30345798 prediction 0.434458042077232 Functional Loss - ATP9B ENSG00000166377 CDS Human protein_coding chr18:77107878 chr18:77107879 nonsynonymous SNV 0.043 5 22 hm5C_associated_SNPs_83901 0 0 0 2 1 ATP9B chr18:77107925 5'GT 77107925 Upstream 47bp
chr2 85868177 85868177 1 + A C COAD 85868176 + 85868156 85868196 41 CCATATCTAATCTTTTGTATCAAGAGATTCACTAAGAACAA CCATATCTAATCTTTTGTATCCAGAGATTCACTAAGAACAA < 41bp 0.808767813423771 0.591538798501914 0.92604744 0.6312058 prediction 0.434458029843716 Functional Loss - USP39 ENSG00000168883 CDS Human protein_coding chr2:85868176 chr2:85868177 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_83902 0 0 1 0 2 USP39 chr2:85868099 3'AG 85868099 Downstream 79bp
chr2 85868177 85868177 1 + A C COAD 85868176 + 85868156 85868196 41 CCATATCTAATCTTTTGTATCAAGAGATTCACTAAGAACAA CCATATCTAATCTTTTGTATCCAGAGATTCACTAAGAACAA < 41bp 0.808767813423771 0.591538798501914 0.92604744 0.6312058 prediction 0.434458029843716 Functional Loss - USP39 ENSG00000168883 CDS Human protein_coding chr2:85868176 chr2:85868177 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_83902 0 0 1 0 2 USP39 chr2:85868241 5'GT 85868241 Upstream 65bp
chr3 121976192 121976192 1 + C T SKCM 121976189 + 121976169 121976209 41 GGAGCAACTGGCTCAGGCGTCTCCACGGCAGTGGCAAATCT GGAGCAACTGGCTCAGGCGTCTCTACGGCAGTGGCAAATCT < 41bp 0.717228764769249 0.483614994145273 0.9412228 0.88980913 prediction 0.434457529538498 Functional Loss - CASR ENSG00000036828 CDS Human protein_coding chr3:121976189 chr3:121976192 synonymous SNV . 0 24 hm5C_associated_SNPs_83903 0 0 0 0 1 CASR chr3:121976234 5'GT 121976234 Upstream 43bp
chr19 829590 829590 1 + G A STAD 829587 + 829567 829607 41 CCGGGGTTAGCACCGTGGTGCTGGGTGCCTATGACCTGAGG CCGGGGTTAGCACCGTGGTGCTGAGTGCCTATGACCTGAGG < 41bp 0.80576079816936 0.588534456481146 0.87330353 0.45768976 prediction 0.434452683376429 Functional Loss - AZU1 ENSG00000172232 CDS Human protein_coding chr19:829587 chr19:829590 nonsynonymous SNV 0.854 4 24 hm5C_associated_SNPs_83904 0 0 1 0 1 AZU1 chr19:829562 3'AG 829562 Downstream 29bp
chr17 18396173 18396173 1 + G A LGG 18396170 + 18396150 18396190 41 TTCGTCCGAGGCCAGAGCTTCTCGGTAAGGCGCCGCAGCCT TTCGTCCGAGGCCAGAGCTTCTCAGTAAGGCGCCGCAGCCT < 41bp 0.81861923047012 0.601395356417331 0.457707 0.28466272 prediction 0.434447748105577 Functional Loss - LGALS9C ENSG00000171916 CDS Human protein_coding chr17:18396170 chr17:18396173 synonymous SNV . 0 24 hm5C_associated_SNPs_83905 0 0 0 0 1 LGALS9C chr17:18396173 5'GT 18396173 Upstream 1bp
chr6 41753998 41753998 1 + A C LUAD 41753997 + 41753977 41754017 41 GGGGGAAGCCCCTGCTGCCCCAGCTGCTTCGAGAACCGCTA GGGGGAAGCCCCTGCTGCCCCCGCTGCTTCGAGAACCGCTA < 41bp 0.71722377052045 0.454539684596988 0.3853143 0.14113015 prediction 0.434447541040901 Functional Loss - PRICKLE4 ENSG00000124593 CDS Human protein_coding chr6:41753997 chr6:41753998 nonsynonymous SNV 0.973 1 22 hm5C_associated_SNPs_83906 0 0 1 0 1 PRICKLE4 chr6:41754070 5'GT 41754070 Upstream 73bp
chr9 135447819 135447819 1 + G A LUAD 135447816 + 135447796 135447836 41 TTCCCCACGGAGGCCGATCGCCAGAGAGCATTAAAAGCCCA TTCCCCACGGAGGCCGATCGCCAAAGAGCATTAAAAGCCCA < 41bp 0.772559544820654 0.555335833771364 0.8565275 0.51892877 prediction 0.434447422098581 Functional Loss - CFAP77 ENSG00000188523 CDS Human protein_coding chr9:135447816 chr9:135447819 synonymous SNV . 0 24 hm5C_associated_SNPs_83907 0 0 0 0 1 CFAP77 chr9:135447775 3'AG 135447775 Downstream 45bp
chr1 170961360 170961360 1 + G A rs189860161 170961357 + 170961337 170961377 41 CTCAGGCGAGCGTGGCCCCTCACGTGCTGAAGACAATCTTA CTCAGGCGAGCGTGGCCCCTCACATGCTGAAGACAATCTTA < 41bp 0.717220149351132 0.469683136861235 0.20220745 0.14656329 prediction 0.434440298702265 Functional Loss - MROH9 ENSG00000117501 CDS Human protein_coding chr1:170961357 chr1:170961360 nonsynonymous SNV 0.259 4 24 hm5C_associated_SNPs_83910 0 0 0 0 1 MROH9 chr1:170961305 3'AG 170961305 Downstream 56bp
chr18 12274254 12274254 1 + G T UCEC 12274252 + 12274232 12274272 41 GTCCTACGACATCCGGTGCACGGGACTCAAGGGCCTGCTGA GTCCTACGACATCCGGTGCACGTGACTCAAGGGCCTGCTGA < 41bp 0.910418319532548 0.693203382032656 0.41267866 0.40157607 prediction 0.434429874999784 Functional Loss - CIDEA ENSG00000176194 CDS Human protein_coding chr18:12274252 chr18:12274254 stopgain 0.014 0 23 hm5C_associated_SNPs_83912 0 0 0 3 1 CIDEA chr18:12274273 5'GT 12274273 Upstream 20bp
chr2 223917619 223917619 1 + G A STAD 223917616 + 223917596 223917636 41 CTCCAGCAGCCCCCTGGAGTCCCGTGCGGCCGGCGGCGGCA CTCCAGCAGCCCCCTGGAGTCCCATGCGGCCGGCGGCGGCA < 41bp 0.809377783936818 0.59217314372481 0.3385282 0.3008313 prediction 0.434409280424016 Functional Loss - KCNE4 ENSG00000152049 CDS Human protein_coding chr2:223917616 chr2:223917619 nonsynonymous SNV 0.011 0 24 hm5C_associated_SNPs_83917 0 0 0 0 1 KCNE4 chr2:223917526 3'AG 223917526 Downstream 94bp
chr2 98928448 98928448 1 + G A UCEC 98928445 + 98928425 98928465 41 CGGACTCGGACGGCTCCTCCCACGGCATCAGCTCCCATGGG CGGACTCGGACGGCTCCTCCCACAGCATCAGCTCCCATGGG < 41bp 0.762473672242859 0.545270454589827 0.328684 0.15992692 prediction 0.434406435306065 Functional Loss - VWA3B ENSG00000168658 CDS Human protein_coding chr2:98928445 chr2:98928448 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_83919 0 0 0 0 1 VWA3B chr2:98928464 5'GT 98928464 Upstream 17bp
chr7 29438008 29438008 1 + C T LUSC 29438006 + 29437986 29438026 41 CAGGTTTCATGGGATCATCTCTCGGGAGCAGGCGGATGAGC CAGGTTTCATGGGATCATCTCTTGGGAGCAGGCGGATGAGC < 41bp 0.717202712866289 0.480070102537961 0.24406669 0.217204 prediction 0.434405425732578 Functional Loss - CHN2 ENSG00000106069 CDS Human protein_coding chr7:29438006 chr7:29438008 nonsynonymous SNV 0.983 4 23 hm5C_associated_SNPs_83920 0 0 1 0 2 CHN2 chr7:29437989 3'AG 29437989 Downstream 20bp
chr7 29438008 29438008 1 + C T LUSC 29438006 + 29437986 29438026 41 CAGGTTTCATGGGATCATCTCTCGGGAGCAGGCGGATGAGC CAGGTTTCATGGGATCATCTCTTGGGAGCAGGCGGATGAGC < 41bp 0.717202712866289 0.480070102537961 0.24406669 0.217204 prediction 0.434405425732578 Functional Loss - CHN2 ENSG00000106069 CDS Human protein_coding chr7:29438006 chr7:29438008 nonsynonymous SNV 0.983 4 23 hm5C_associated_SNPs_83920 0 0 1 0 2 CHN2 chr7:29438102 5'GT 29438102 Upstream 95bp
chr2 47251474 47251474 1 + G A rs112085853 47251471 + 47251451 47251491 41 CCCCAGGTCATCCTCTATGTCTCGCTGCAGCTGGCCCTCGT CCCCAGGTCATCCTCTATGTCTCACTGCAGCTGGCCCTCGT < 41bp 0.717201436490506 0.474970007590566 0.10413098 0.020823509 prediction 0.434402872981012 Functional Loss - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47251471 chr2:47251474 synonymous SNV . 0 24 hm5C_associated_SNPs_83922 0 0 0 0 2 TTC7A chr2:47251426 3'AG 47251426 Downstream 49bp
chr2 47251474 47251474 1 + G A rs112085853 47251471 + 47251451 47251491 41 CCCCAGGTCATCCTCTATGTCTCGCTGCAGCTGGCCCTCGT CCCCAGGTCATCCTCTATGTCTCACTGCAGCTGGCCCTCGT < 41bp 0.717201436490506 0.474970007590566 0.10413098 0.020823509 prediction 0.434402872981012 Functional Loss - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47251471 chr2:47251474 synonymous SNV . 0 24 hm5C_associated_SNPs_83922 0 0 0 0 2 TTC7A chr2:47251498 5'GT 47251498 Upstream 25bp
chr17 61557829 61557829 1 + C T COAD 61557826 + 61557806 61557846 41 ATGCCTTCGTCCGCCGCGCACTGCATCGCCGATACGGAGAC ATGCCTTCGTCCGCCGCGCACTGTATCGCCGATACGGAGAC < 41bp 0.750290909470822 0.533090483775847 0.1899944 0.14336205 prediction 0.434400851389949 Functional Loss - ACE ENSG00000159640 CDS Human protein_coding chr17:61557826 chr17:61557829 nonsynonymous SNV 0.927 0 24 hm5C_associated_SNPs_83923 0 0 0 0 1 ACE chr17:61557889 5'GT 61557889 Upstream 61bp
chr10 133931028 133931028 1 + G A SKCM 133931025 + 133931005 133931045 41 GCAGCGTGTACCACCTGCACCAGGAGGAGATCACCCGCATC GCAGCGTGTACCACCTGCACCAGAAGGAGATCACCCGCATC < 41bp 0.815123979380076 0.597929622849171 0.8936487 0.87642354 prediction 0.434388713061809 Functional Loss - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133931025 chr10:133931028 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_83928 0 0 0 0 1 JAKMIP3 chr10:133931078 5'GT 133931078 Upstream 51bp
chr20 21687610 21687610 1 + C T STAD 21687608 + 21687588 21687628 41 ATGGGCAGCCACCCCGGGGTCCCGGGCACGGCGGGCCACGT ATGGGCAGCCACCCCGGGGTCCTGGGCACGGCGGGCCACGT < 41bp 0.815921178618613 0.598727746551505 0.73548055 0.8238783 prediction 0.434386864134217 Functional Loss - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21687608 chr20:21687610 nonsynonymous SNV 0.921 3 23 hm5C_associated_SNPs_83929 0 0 0 0 1 PAX1 chr20:21687705 5'GT 21687705 Upstream 96bp
chr21 45745116 45745116 1 + G T LUSC 45745114 + 45745094 45745134 41 GAGGGCAAGGGCGTCTTCGACTGCAGGACCAATGTCCTGGG GAGGGCAAGGGCGTCTTCGACTTCAGGACCAATGTCCTGGG < 41bp 0.907682780172629 0.690493809920964 0.33071488 0.19216716 prediction 0.434377940503329 Functional Loss - PFKL ENSG00000141959 CDS Human protein_coding chr21:45745114 chr21:45745116 nonsynonymous SNV 0.987 4 23 hm5C_associated_SNPs_83931 0 0 1 0 2 PFKL chr21:45745036 3'AG 45745036 Downstream 81bp
chr21 45745116 45745116 1 + G T LUSC 45745114 + 45745094 45745134 41 GAGGGCAAGGGCGTCTTCGACTGCAGGACCAATGTCCTGGG GAGGGCAAGGGCGTCTTCGACTTCAGGACCAATGTCCTGGG < 41bp 0.907682780172629 0.690493809920964 0.33071488 0.19216716 prediction 0.434377940503329 Functional Loss - PFKL ENSG00000141959 CDS Human protein_coding chr21:45745114 chr21:45745116 nonsynonymous SNV 0.987 4 23 hm5C_associated_SNPs_83931 0 0 1 0 2 PFKL chr21:45745147 5'GT 45745147 Upstream 32bp
chr1 11898452 11898452 1 + G A COAD 11898449 + 11898429 11898469 41 CCGAGGACTACCCGCGGTACCCCGACATCCACGACCTGGAC CCGAGGACTACCCGCGGTACCCCAACATCCACGACCTGGAC < 41bp 0.717188757497967 0.474071714407337 0.39700583 0.3940857 prediction 0.434377514995934 Functional Loss - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11898449 chr1:11898452 nonsynonymous SNV 0.764 2 24 hm5C_associated_SNPs_83932 0 0 1 0 2 CLCN6 chr1:11898392 3'AG 11898392 Downstream 61bp
chr1 11898452 11898452 1 + G A COAD 11898449 + 11898429 11898469 41 CCGAGGACTACCCGCGGTACCCCGACATCCACGACCTGGAC CCGAGGACTACCCGCGGTACCCCAACATCCACGACCTGGAC < 41bp 0.717188757497967 0.474071714407337 0.39700583 0.3940857 prediction 0.434377514995934 Functional Loss - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11898449 chr1:11898452 nonsynonymous SNV 0.764 2 24 hm5C_associated_SNPs_83932 0 0 1 0 2 CLCN6 chr1:11898499 5'GT 11898499 Upstream 48bp
chr9 93624596 93624596 1 + C T UCEC 93624594 + 93624574 93624614 41 AGACAGGGAAGCTCTCCATCCCCGAGGGAAAGAAGTTCGAC AGACAGGGAAGCTCTCCATCCCTGAGGGAAAGAAGTTCGAC < 41bp 0.717186968798411 0.421177843847224 0.3976149 0.07739282 prediction 0.434373937596823 Functional Loss - SYK ENSG00000165025 CDS Human protein_coding chr9:93624594 chr9:93624596 synonymous SNV . 0 23 hm5C_associated_SNPs_83934 0 0 0 0 1 SYK chr9:93624626 5'GT 93624626 Upstream 31bp
chr13 48936984 48936984 1 + G A COAD 48936981 + 48936961 48937001 41 TATACCCATTAATGGTTCACCTCGAACACCCAGGCGAGGTC TATACCCATTAATGGTTCACCTCAAACACCCAGGCGAGGTC < 41bp 0.742245622245596 0.525061221858133 0.21937817 0.21626487 prediction 0.434368800774926 Functional Loss - RB1 ENSG00000139687 CDS Human protein_coding chr13:48936981 chr13:48936984 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_83937 0 0 0 0 1 RB1 chr13:48936951 3'AG 48936951 Downstream 34bp
chr3 89499479 89499479 1 + G A rs145084709 89499476 + 89499456 89499496 41 AGTATTCTGGACAAGCTTATCCGGAATCCCGGCAGCCTGAA AGTATTCTGGACAAGCTTATCCGAAATCCCGGCAGCCTGAA < 41bp 0.717184024652091 0.49775188732233 0.33114684 0.12978029 prediction 0.434368049304182 Functional Loss - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89499476 chr3:89499479 synonymous SNV . 0 24 hm5C_associated_SNPs_83938 0 0 0 0 1 EPHA3 chr3:89499520 5'GT 89499520 Upstream 42bp
chr9 97203357 97203357 1 + C T ESCA 97203355 + 97203335 97203375 41 TAGCTGATGTCACTCAGGAGCACGAGCGAAGTACAGCTTAT TAGCTGATGTCACTCAGGAGCATGAGCGAAGTACAGCTTAT < 41bp 0.717183020950163 0.427766093432896 0.23312613 0.2957747 prediction 0.434366041900327 Functional Loss - MFSD14B ENSG00000148110 CDS Human protein_coding chr9:97203355 chr9:97203357 synonymous SNV . 0 23 hm5C_associated_SNPs_83939 0 0 1 0 2 MFSD14B chr9:97203267 3'AG 97203267 Downstream 91bp
chr9 97203357 97203357 1 + C T ESCA 97203355 + 97203335 97203375 41 TAGCTGATGTCACTCAGGAGCACGAGCGAAGTACAGCTTAT TAGCTGATGTCACTCAGGAGCATGAGCGAAGTACAGCTTAT < 41bp 0.717183020950163 0.427766093432896 0.23312613 0.2957747 prediction 0.434366041900327 Functional Loss - MFSD14B ENSG00000148110 CDS Human protein_coding chr9:97203355 chr9:97203357 synonymous SNV . 0 23 hm5C_associated_SNPs_83939 0 0 1 0 2 MFSD14B chr9:97203381 5'GT 97203381 Upstream 25bp
chr7 40899974 40899974 1 + G A LGG 40899971 + 40899951 40899991 41 AGGCCAGGCCGCCCCCGCTGCTCGGGCAGCACACAACGCAC AGGCCAGGCCGCCCCCGCTGCTCAGGCAGCACACAACGCAC < 41bp 0.718050755400142 0.500868263517857 0.3078686 0.11362645 prediction 0.434364983764571 Functional Loss - SUGCT ENSG00000175600 CDS Human protein_coding chr7:40899971 chr7:40899974 nonsynonymous SNV 0.961 3 24 hm5C_associated_SNPs_83940 0 0 0 0 1 SUGCT chr7:40899915 3'AG 40899915 Downstream 60bp
chr5 131728257 131728257 1 + C T SKCM 131728255 + 131728235 131728275 41 AACATGGGTGTGGGAGTCAGCTCCACAGCATCCCGCCTGGG AACATGGGTGTGGGAGTCAGCTTCACAGCATCCCGCCTGGG < 41bp 0.717182450040221 0.421653885254006 0.85780764 0.26054367 prediction 0.434364900080441 Functional Loss - SLC22A5 ENSG00000197375 CDS Human protein_coding chr5:131728255 chr5:131728257 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_83941 0 0 1 0 1 SLC22A5 chr5:131728307 5'GT 131728307 Upstream 51bp
chr5 131728258 131728258 1 + C T SKCM 131728255 + 131728235 131728275 41 AACATGGGTGTGGGAGTCAGCTCCACAGCATCCCGCCTGGG AACATGGGTGTGGGAGTCAGCTCTACAGCATCCCGCCTGGG < 41bp 0.717182450040221 0.493992755666858 0.85780764 0.87918854 prediction 0.434364900080441 Functional Loss - SLC22A5 ENSG00000197375 CDS Human protein_coding chr5:131728255 chr5:131728258 synonymous SNV . 0 24 hm5C_associated_SNPs_83942 0 0 1 0 1 SLC22A5 chr5:131728307 5'GT 131728307 Upstream 50bp
chr17 14934766 14934766 1 + G A rs182027727 14934763 + 14934743 14934783 41 CACTGCAGGCCCCTCTACCGCACGCTGGGTCCAGGGACATC CACTGCAGGCCCCTCTACCGCACACTGGGTCCAGGGACATC < 41bp 0.717182365521456 0.486538711635845 0.21761104 0.08675474 prediction 0.434364731042911 Functional Loss - CDRT7 ENSG00000259944 ncRNA_exonic Human lincRNA chr17:14934763 chr17:14934766 . . 0 24 hm5C_associated_SNPs_83943 0 0 0 0 1 CDRT7 chr17:14934809 5'GT 14934809 Upstream 44bp
chr10 26993670 26993670 1 + G A PRAD 26993667 + 26993647 26993687 41 TCCAAATGTATGTCGTATATCACGGTAAGTTTACAGTCCAT TCCAAATGTATGTCGTATATCACAGTAAGTTTACAGTCCAT < 41bp 0.760013510458071 0.542833134066828 0.5235439 0.21084028 prediction 0.434360752782486 Functional Loss - PDSS1 ENSG00000148459 CDS Human protein_coding chr10:26993667 chr10:26993670 nonsynonymous SNV 0.952 1 24 hm5C_associated_SNPs_83944 0 0 1 0 2 PDSS1 chr10:26993606 3'AG 26993606 Downstream 65bp
chr10 26993670 26993670 1 + G A PRAD 26993667 + 26993647 26993687 41 TCCAAATGTATGTCGTATATCACGGTAAGTTTACAGTCCAT TCCAAATGTATGTCGTATATCACAGTAAGTTTACAGTCCAT < 41bp 0.760013510458071 0.542833134066828 0.5235439 0.21084028 prediction 0.434360752782486 Functional Loss - PDSS1 ENSG00000148459 CDS Human protein_coding chr10:26993667 chr10:26993670 nonsynonymous SNV 0.952 1 24 hm5C_associated_SNPs_83944 0 0 1 0 2 PDSS1 chr10:26993670 5'GT 26993670 Upstream 1bp
chr4 41652481 41652481 1 + G A rs145303184 41652478 + 41652458 41652498 41 GAGAAGGAAAGAGAGTGTCCCACGGTGGCACCTGCCCACTC GAGAAGGAAAGAGAGTGTCCCACAGTGGCACCTGCCCACTC < 41bp 0.718656507385134 0.501477205686958 0.4112624 0.1423049 prediction 0.434358603396351 Functional Loss - LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41652478 chr4:41652481 synonymous SNV . 0 24 hm5C_associated_SNPs_83945 0 0 0 0 1 LIMCH1 chr4:41652410 3'AG 41652410 Downstream 72bp
chr11 86133694 86133694 1 + C T UCEC 86133691 + 86133671 86133711 41 CAATGCCAGAGGCGCACCTCCAACGTGGGCGAGAGCAACCT CAATGCCAGAGGCGCACCTCCAATGTGGGCGAGAGCAACCT < 41bp 0.717175234215041 0.497689620353878 0.24680486 0.15237072 prediction 0.434350468430081 Functional Loss - CCDC81 ENSG00000149201 CDS Human protein_coding chr11:86133691 chr11:86133694 synonymous SNV . 0 24 hm5C_associated_SNPs_83946 0 0 0 0 1 CCDC81 chr11:86133616 3'AG 86133616 Downstream 79bp
chr15 74177399 74177399 1 + C T CESC 74177397 + 74177377 74177417 41 TCTTCCAGCTGATGGTGGAGCACGACCACGAGACCTTCTGG TCTTCCAGCTGATGGTGGAGCATGACCACGAGACCTTCTGG < 41bp 0.845355398349884 0.628182563186222 0.25622568 0.24048385 prediction 0.434345670327325 Functional Loss - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74177397 chr15:74177399 synonymous SNV . 0 23 hm5C_associated_SNPs_83947 0 0 0 0 1 TBC1D21 chr15:74177444 5'GT 74177444 Upstream 46bp
chr12 52314573 52314573 1 + G T LUAD 52314570 + 52314550 52314590 41 CAGGCCTAGCTCAGATGATGCGGGAGTGCTGGTACCCAAAC CAGGCCTAGCTCAGATGATGCGGTAGTGCTGGTACCCAAAC < 41bp 0.930814793676783 0.713642056481845 0.92474216 0.8514066 prediction 0.434345474389876 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52314570 chr12:52314573 stopgain 1.000 0 24 hm5C_associated_SNPs_83948 0 0 0 0 1 ACVRL1 chr12:52314543 3'AG 52314543 Downstream 31bp
chr8 19679998 19679998 1 + G T STAD 19679995 + 19679975 19680015 41 AGGCTGAAACTATTGAAGAACAAGAATCTCCAGTGAACTGC AGGCTGAAACTATTGAAGAACAATAATCTCCAGTGAACTGC < 41bp 0.717171588826167 0.390605911276499 0.07370749 0.043775827 prediction 0.434343177652334 Functional Loss - INTS10 ENSG00000104613 CDS Human protein_coding chr8:19679995 chr8:19679998 stopgain 0.998 1 24 hm5C_associated_SNPs_83950 0 0 1 0 2 INTS10 chr8:19679950 3'AG 19679950 Downstream 49bp
chr8 19679998 19679998 1 + G T STAD 19679995 + 19679975 19680015 41 AGGCTGAAACTATTGAAGAACAAGAATCTCCAGTGAACTGC AGGCTGAAACTATTGAAGAACAATAATCTCCAGTGAACTGC < 41bp 0.717171588826167 0.390605911276499 0.07370749 0.043775827 prediction 0.434343177652334 Functional Loss - INTS10 ENSG00000104613 CDS Human protein_coding chr8:19679995 chr8:19679998 stopgain 0.998 1 24 hm5C_associated_SNPs_83950 0 0 1 0 2 INTS10 chr8:19680031 5'GT 19680031 Upstream 34bp
chr2 71191904 71191904 1 + G A rs368854893 71191901 + 71191881 71191921 41 ATCGGGAAGGACGTGCAGGCCATGAAGGCAGTAGTTGGGGA ATCGGGAAGGACGTGCAGGCCATAAAGGCAGTAGTTGGGGA < 41bp 0.789963427011566 0.572794704759392 0.20546082 0.16041145 prediction 0.434337444504348 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71191901 chr2:71191904 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_83953 1 0 0 0 1 ATP6V1B1 chr2:71191866 3'AG 71191866 Downstream 39bp
chr19 48257807 48257807 1 + G A rs192330726 48257804 + 48257784 48257824 41 ACCCTGCTCTCAGCGGCCCACGAGGTGGAGTTGCAGCGGCA ACCCTGCTCTCAGCGGCCCACGAAGTGGAGTTGCAGCGGCA < 41bp 0.809736454508651 0.592567768893543 0.9283242 0.77755594 prediction 0.434337371230217 Functional Loss - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48257804 chr19:48257807 synonymous SNV . 0 24 hm5C_associated_SNPs_83954 0 0 1 0 2 NOP53 chr19:48257784 3'AG 48257784 Downstream 24bp
chr19 48257807 48257807 1 + G A rs192330726 48257804 + 48257784 48257824 41 ACCCTGCTCTCAGCGGCCCACGAGGTGGAGTTGCAGCGGCA ACCCTGCTCTCAGCGGCCCACGAAGTGGAGTTGCAGCGGCA < 41bp 0.809736454508651 0.592567768893543 0.9283242 0.77755594 prediction 0.434337371230217 Functional Loss - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48257804 chr19:48257807 synonymous SNV . 0 24 hm5C_associated_SNPs_83954 0 0 1 0 2 NOP53 chr19:48257888 5'GT 48257888 Upstream 82bp
chr7 94180689 94180689 1 + G T SARC 94180686 + 94180666 94180706 41 TGCTGTTTGCTTTTATTTATCTGGCTTTGCAGAAGCGTCAA TGCTGTTTGCTTTTATTTATCTGTCTTTGCAGAAGCGTCAA < 41bp 0.71716385737184 0.331008754549567 0.081447095 0.03462574 prediction 0.434327714743679 Functional Loss - CASD1 ENSG00000127995 CDS Human protein_coding chr7:94180686 chr7:94180689 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_83957 0 0 1 0 2 CASD1 chr7:94180650 3'AG 94180650 Downstream 40bp
chr7 94180689 94180689 1 + G T SARC 94180686 + 94180666 94180706 41 TGCTGTTTGCTTTTATTTATCTGGCTTTGCAGAAGCGTCAA TGCTGTTTGCTTTTATTTATCTGTCTTTGCAGAAGCGTCAA < 41bp 0.71716385737184 0.331008754549567 0.081447095 0.03462574 prediction 0.434327714743679 Functional Loss - CASD1 ENSG00000127995 CDS Human protein_coding chr7:94180686 chr7:94180689 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_83957 0 0 1 0 2 CASD1 chr7:94180654 3'AG 94180654 Downstream 36bp
chr6 122737406 122737406 1 + G A UCEC 122737403 + 122737383 122737423 41 GGAAGGAGGTGTCAGAATTACGAGCAAAGCATGCACAACAG GGAAGGAGGTGTCAGAATTACGAACAAAGCATGCACAACAG < 41bp 0.777538210396976 0.56037530829814 0.53891784 0.17450118 prediction 0.434325804197674 Functional Loss - HSF2 ENSG00000025156 CDS Human protein_coding chr6:122737403 chr6:122737406 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_83958 0 0 1 0 2 HSF2 chr6:122737366 3'AG 122737366 Downstream 41bp
chr6 122737406 122737406 1 + G A UCEC 122737403 + 122737383 122737423 41 GGAAGGAGGTGTCAGAATTACGAGCAAAGCATGCACAACAG GGAAGGAGGTGTCAGAATTACGAACAAAGCATGCACAACAG < 41bp 0.777538210396976 0.56037530829814 0.53891784 0.17450118 prediction 0.434325804197674 Functional Loss - HSF2 ENSG00000025156 CDS Human protein_coding chr6:122737403 chr6:122737406 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_83958 0 0 1 0 2 HSF2 chr6:122737441 5'GT 122737441 Upstream 36bp
chr17 72346868 72346868 1 + C T rs2382644 72346865 + 72346845 72346885 41 GCTGGAAGCATGAGAAGTCCCGCCGGGCCCTCAAATGGCGG GCTGGAAGCATGAGAAGTCCCGCTGGGCCCTCAAATGGCGG < 41bp 0.717675434725988 0.500519653448546 0.23703635 0.16946769 prediction 0.434311562554884 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72346865 chr17:72346868 nonsynonymous SNV 0.961 3 24 hm5C_associated_SNPs_83960 0 0 0 0 1 KIF19 chr17:72346846 3'AG 72346846 Downstream 23bp
chr9 3898896 3898896 1 + G T rs61201518 3898894 + 3898874 3898914 41 CCGGTCCTTGGAATATTTTCCTGGGAAGGCATCATGCTCTA CCGGTCCTTGGAATATTTTCCTTGGAAGGCATCATGCTCTA < 41bp 0.717155127165086 0.386148807885341 0.5395487 0.112829685 prediction 0.434310254330171 Functional Loss - GLIS3-AS1 ENSG00000237009 ncRNA_exonic Human antisense chr9:3898894 chr9:3898896 . . 0 23 hm5C_associated_SNPs_83963 0 0 0 0 1 GLIS3-AS1 chr9:3898959 5'GT 3898959 Upstream 64bp
chr14 97319464 97319464 1 + G A UCEC 97319461 + 97319441 97319481 41 GAGTATGTGCATGGAGATATCAAGGCCTCAAATCTTCTTCT GAGTATGTGCATGGAGATATCAAAGCCTCAAATCTTCTTCT < 41bp 0.78129095691495 0.564138431849605 0.9128159 0.88349724 prediction 0.434305050130691 Functional Loss - VRK1 ENSG00000100749 CDS Human protein_coding chr14:97319461 chr14:97319464 synonymous SNV . 0 24 hm5C_associated_SNPs_83965 0 0 1 0 2 VRK1 chr14:97319411 3'AG 97319411 Downstream 54bp
chr14 97319464 97319464 1 + G A UCEC 97319461 + 97319441 97319481 41 GAGTATGTGCATGGAGATATCAAGGCCTCAAATCTTCTTCT GAGTATGTGCATGGAGATATCAAAGCCTCAAATCTTCTTCT < 41bp 0.78129095691495 0.564138431849605 0.9128159 0.88349724 prediction 0.434305050130691 Functional Loss - VRK1 ENSG00000100749 CDS Human protein_coding chr14:97319461 chr14:97319464 synonymous SNV . 0 24 hm5C_associated_SNPs_83965 0 0 1 0 2 VRK1 chr14:97319503 5'GT 97319503 Upstream 40bp
chr8 143558603 143558603 1 + G A SKCM 143558600 + 143558580 143558620 41 CGCAGTGCAGCGGACCCCTGCGCGAGCAGCGGCTGTGCAAC CGCAGTGCAGCGGACCCCTGCGCAAGCAGCGGCTGTGCAAC < 41bp 0.811314487913115 0.594164296341012 0.36892527 0.1308726 prediction 0.434300383144208 Functional Loss - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143558600 chr8:143558603 nonsynonymous SNV 0.932 3 24 hm5C_associated_SNPs_83966 0 0 0 0 1 ADGRB1 chr8:143558639 5'GT 143558639 Upstream 37bp
chr17 7705023 7705023 1 + G T STAD 7705020 + 7705000 7705040 41 TAGGAGTAGACCTGGGAACTCAGGAGAATGTGAGCCCCTCC TAGGAGTAGACCTGGGAACTCAGTAGAATGTGAGCCCCTCC < 41bp 0.717149730213204 0.390130340331463 0.9068041 0.395806 prediction 0.434299460426408 Functional Loss - DNAH2 ENSG00000183914 CDS Human protein_coding chr17:7705020 chr17:7705023 stopgain 0.996 1 24 hm5C_associated_SNPs_83967 0 0 0 0 1 DNAH2 chr17:7705028 5'GT 7705028 Upstream 6bp
chr11 67071065 67071065 1 + G A rs566914023 67071062 + 67071042 67071082 41 GGTTGAGGGAAGGGGCCGTGCCCGGTGCCAGCCCAGGTGCT GGTTGAGGGAAGGGGCCGTGCCCAGTGCCAGCCCAGGTGCT < 41bp 0.717146795598155 0.467296044535295 0.82150364 0.37877864 prediction 0.434293591196309 Functional Loss - SSH3 ENSG00000172830 UTR5 Human protein_coding chr11:67071062 chr11:67071065 . . 0 24 hm5C_associated_SNPs_83970 0 0 1 0 1 SSH3 chr11:67071162 5'GT 67071162 Upstream 98bp
chr7 73929861 73929861 1 + T C SARC 73929860 + 73929840 73929880 41 GTAGCCTCCCTCGGTCCTCCCTGGAACATGGCTCAGATGTG GTAGCCTCCCTCGGTCCTCCCCGGAACATGGCTCAGATGTG < 41bp 0.819121775774531 0.601979306428943 0.6444825 0.69495875 prediction 0.434284938691175 Functional Loss - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73929860 chr7:73929861 nonsynonymous SNV 0.782 2 22 hm5C_associated_SNPs_83972 0 0 1 0 2 GTF2IRD1 chr7:73929771 3'AG 73929771 Downstream 91bp
chr7 73929861 73929861 1 + T C SARC 73929860 + 73929840 73929880 41 GTAGCCTCCCTCGGTCCTCCCTGGAACATGGCTCAGATGTG GTAGCCTCCCTCGGTCCTCCCCGGAACATGGCTCAGATGTG < 41bp 0.819121775774531 0.601979306428943 0.6444825 0.69495875 prediction 0.434284938691175 Functional Loss - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73929860 chr7:73929861 nonsynonymous SNV 0.782 2 22 hm5C_associated_SNPs_83972 0 0 1 0 2 GTF2IRD1 chr7:73929926 5'GT 73929926 Upstream 66bp
chr6 28264666 28264666 1 + G A OV 28264663 + 28264643 28264683 41 GTGGTCACATCTGAGTCTGACTCGGAGGAACCTCTGTGGGA GTGGTCACATCTGAGTCTGACTCAGAGGAACCTCTGTGGGA < 41bp 0.787918891250775 0.570776930282825 0.17169964 0.108545035 prediction 0.4342839219359 Functional Loss - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28264663 chr6:28264666 nonsynonymous SNV 0.133 0 24 hm5C_associated_SNPs_83974 0 0 1 0 2 PGBD1 chr6:28264593 3'AG 28264593 Downstream 74bp
chr6 28264666 28264666 1 + G A OV 28264663 + 28264643 28264683 41 GTGGTCACATCTGAGTCTGACTCGGAGGAACCTCTGTGGGA GTGGTCACATCTGAGTCTGACTCAGAGGAACCTCTGTGGGA < 41bp 0.787918891250775 0.570776930282825 0.17169964 0.108545035 prediction 0.4342839219359 Functional Loss - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28264663 chr6:28264666 nonsynonymous SNV 0.133 0 24 hm5C_associated_SNPs_83974 0 0 1 0 2 PGBD1 chr6:28264722 5'GT 28264722 Upstream 57bp
chr14 77242550 77242550 1 + G A SKCM 77242547 + 77242527 77242567 41 TGGAAGCACTCGGTGCTGGACGTGGAGCGCCTGGGCCGCGA TGGAAGCACTCGGTGCTGGACGTAGAGCGCCTGGGCCGCGA < 41bp 0.717140739726074 0.473765812190099 0.322782 0.3152954 prediction 0.434281479452149 Functional Loss - VASH1 ENSG00000071246 CDS Human protein_coding chr14:77242547 chr14:77242550 synonymous SNV . 0 24 hm5C_associated_SNPs_83975 0 0 1 0 1 VASH1 chr14:77242616 5'GT 77242616 Upstream 67bp
chr15 101555597 101555597 1 + G A rs368413148 101555594 + 101555574 101555614 41 ACCAGAGGTCGCCAGCGCTCCGGGACTGAGGCAGGTGTGTG ACCAGAGGTCGCCAGCGCTCCGGAACTGAGGCAGGTGTGTG < 41bp 0.794065248840623 0.576925738537625 0.5948828 0.2832266 prediction 0.434279020605997 Functional Loss - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101555594 chr15:101555597 synonymous SNV . 0 24 hm5C_associated_SNPs_83978 0 0 0 0 2 LRRK1 chr15:101555531 3'AG 101555531 Downstream 67bp
chr15 101555597 101555597 1 + G A rs368413148 101555594 + 101555574 101555614 41 ACCAGAGGTCGCCAGCGCTCCGGGACTGAGGCAGGTGTGTG ACCAGAGGTCGCCAGCGCTCCGGAACTGAGGCAGGTGTGTG < 41bp 0.794065248840623 0.576925738537625 0.5948828 0.2832266 prediction 0.434279020605997 Functional Loss - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101555594 chr15:101555597 synonymous SNV . 0 24 hm5C_associated_SNPs_83978 0 0 0 0 2 LRRK1 chr15:101555607 5'GT 101555607 Upstream 11bp
chr8 9564372 9564372 1 + G A HNSC 9564369 + 9564349 9564389 41 TCTGGCAGTTTACTCCACTGCACGAGGCTGCTTCCAAGAAC TCTGGCAGTTTACTCCACTGCACAAGGCTGCTTCCAAGAAC < 41bp 0.782554674267366 0.565415772276145 0.19094151 0.08332518 prediction 0.434277803982442 Functional Loss - TNKS ENSG00000173273 CDS Human protein_coding chr8:9564369 chr8:9564372 nonsynonymous SNV 0.975 3 24 hm5C_associated_SNPs_83979 0 0 1 0 1 TNKS chr8:9564321 3'AG 9564321 Downstream 52bp
chr18 61558735 61558735 1 + G T LUSC 61558733 + 61558713 61558753 41 CCCTCAATTTATTCAAGCATCTGGCAAAAGCAAGCCCCACC CCCTCAATTTATTCAAGCATCTTGCAAAAGCAAGCCCCACC < 41bp 0.717133812070955 0.367225923693601 0.07454464 0.053455442 prediction 0.434267624141911 Functional Loss - SERPINB2 ENSG00000197632 CDS Human protein_coding chr18:61558733 chr18:61558735 synonymous SNV . 0 23 hm5C_associated_SNPs_83983 0 0 1 0 1 SERPINB2 chr18:61558670 3'AG 61558670 Downstream 66bp
chr10 99371291 99371291 1 + G T UCEC 99371289 + 99371269 99371309 41 GACCCGGCGCTTTGGGATCCCAGGGCTGAAGAAAATCATGG GACCCGGCGCTTTGGGATCCCATGGCTGAAGAAAATCATGG < 41bp 0.717131625856924 0.359872260926501 0.9183802 0.3140502 prediction 0.434263251713848 Functional Loss - HOGA1 ENSG00000241935 CDS Human protein_coding chr10:99371289 chr10:99371291 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_83985 0 0 0 0 1 HOGA1 chr10:99371267 3'AG 99371267 Downstream 25bp
chr7 34125622 34125622 1 + C T rs10249320 34125619 + 34125599 34125639 41 AAGGGACAGTCAAGGTAAAGCTCCGGGCCCATCGAGAATGC AAGGGACAGTCAAGGTAAAGCTCTGGGCCCATCGAGAATGC < 41bp 0.717129449418722 0.48882387863449 0.19333714 0.09569478 prediction 0.434258898837444 Functional Loss - BMPER ENSG00000164619 CDS Human protein_coding chr7:34125619 chr7:34125622 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_83987 1 0 0 0 1 BMPER chr7:34125704 5'GT 34125704 Upstream 83bp
chr7 34125621 34125621 1 + C T UCEC 34125619 + 34125599 34125639 41 AAGGGACAGTCAAGGTAAAGCTCCGGGCCCATCGAGAATGC AAGGGACAGTCAAGGTAAAGCTTCGGGCCCATCGAGAATGC < 41bp 0.717129449418722 0.420492283096587 0.19333714 0.08267927 prediction 0.434258898837444 Functional Loss - BMPER ENSG00000164619 CDS Human protein_coding chr7:34125619 chr7:34125621 synonymous SNV . 0 23 hm5C_associated_SNPs_83988 0 0 0 0 1 BMPER chr7:34125704 5'GT 34125704 Upstream 84bp
chr4 57976087 57976087 1 + C T rs548051457 57976085 + 57976065 57976105 41 GACCTGGGTGATGGCCTTCTCCCCGCGGCTCTCGGCCCTCT GACCTGGGTGATGGCCTTCTCCTCGCGGCTCTCGGCCCTCT < 41bp 0.760311278726671 0.543184404902965 0.64723384 0.59966576 prediction 0.434253747647412 Functional Loss - IGFBP7 ENSG00000163453 CDS Human protein_coding chr4:57976085 chr4:57976087 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_83991 0 0 0 0 1 IGFBP7 chr4:57976136 5'GT 57976136 Upstream 50bp
chr17 45017921 45017921 1 + G T LIHC 45017918 + 45017898 45017938 41 GGCAAGGCTGTCCTGTCCCCCAGGCACCCAAGGATCCTGCC GGCAAGGCTGTCCTGTCCCCCAGTCACCCAAGGATCCTGCC < 41bp 0.717126005367834 0.352744360861541 0.6133146 0.14142033 prediction 0.434252010735667 Functional Loss - GOSR2 ENSG00000108433 CDS Human protein_coding chr17:45017918 chr17:45017921 nonsynonymous SNV 0.003 4 24 hm5C_associated_SNPs_83992 0 0 1 0 1 GOSR2 chr17:45017921 3'AG 45017921 Downstream 1bp
chr7 134632353 134632353 1 + C T STAD 134632350 + 134632330 134632370 41 GGCTGGAGGAGCTTCGTCGTCGTCGCGGGGAGACCGAGAGC GGCTGGAGGAGCTTCGTCGTCGTTGCGGGGAGACCGAGAGC < 41bp 0.725325179846376 0.508200307762151 0.44341853 0.28098488 prediction 0.43424974416845 Functional Loss - CALD1 ENSG00000122786 CDS Human protein_coding chr7:134632350 chr7:134632353 nonsynonymous SNV 0.808 4 24 hm5C_associated_SNPs_83993 0 0 1 0 1 CALD1 chr7:134632259 3'AG 134632259 Downstream 95bp
chr11 120175882 120175882 1 + G A LUAD 120175879 + 120175859 120175899 41 GAGGAGCTGGAGAAGTTTGCCAAGACCTTCAAGCAGAGGCG GAGGAGCTGGAGAAGTTTGCCAAAACCTTCAAGCAGAGGCG < 41bp 0.807652652779369 0.590528279754599 0.26569492 0.18568158 prediction 0.434248746049541 Functional Loss - POU2F3 ENSG00000137709 CDS Human protein_coding chr11:120175879 chr11:120175882 synonymous SNV . 0 24 hm5C_associated_SNPs_83994 0 0 0 0 1 POU2F3 chr11:120175921 5'GT 120175921 Upstream 40bp
chr10 133948595 133948595 1 + G A rs116138939 133948592 + 133948572 133948612 41 CGGCGCTTCCAGCTTAAAATCGCGGAGTTAAGTGCGATTAT CGGCGCTTCCAGCTTAAAATCGCAGAGTTAAGTGCGATTAT < 41bp 0.717121148741412 0.462697519344458 0.91272163 0.87227106 prediction 0.434242297482823 Functional Loss - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133948592 chr10:133948595 synonymous SNV . 0 24 hm5C_associated_SNPs_83996 0 0 0 0 2 JAKMIP3 chr10:133948545 3'AG 133948545 Downstream 51bp
chr10 133948595 133948595 1 + G A rs116138939 133948592 + 133948572 133948612 41 CGGCGCTTCCAGCTTAAAATCGCGGAGTTAAGTGCGATTAT CGGCGCTTCCAGCTTAAAATCGCAGAGTTAAGTGCGATTAT < 41bp 0.717121148741412 0.462697519344458 0.91272163 0.87227106 prediction 0.434242297482823 Functional Loss - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133948592 chr10:133948595 synonymous SNV . 0 24 hm5C_associated_SNPs_83996 0 0 0 0 2 JAKMIP3 chr10:133948664 5'GT 133948664 Upstream 70bp
chr19 49636561 49636561 1 + T C UCEC 49636560 + 49636540 49636580 41 AGCAGAAGCTGCAGCAGACGCTGCAGAAAGCGGAGACCTTG AGCAGAAGCTGCAGCAGACGCCGCAGAAAGCGGAGACCTTG < 41bp 0.81749144303882 0.600376287496817 0.23711714 0.46438864 prediction 0.434230311084006 Functional Loss - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49636560 chr19:49636561 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_84001 0 0 0 0 1 PPFIA3 chr19:49636628 5'GT 49636628 Upstream 68bp
chr14 100184395 100184395 1 + C T UCEC 100184393 + 100184373 100184413 41 CGTCCTCCCTTCCCACAGGTCACGAGACCTCTGCCAACCAC CGTCCTCCCTTCCCACAGGTCATGAGACCTCTGCCAACCAC < 41bp 0.818458882354564 0.601345833587747 0.102081835 0.10444796 prediction 0.434226097533633 Functional Loss - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100184393 chr14:100184395 synonymous SNV . 0 23 hm5C_associated_SNPs_84003 0 0 0 0 2 CYP46A1 chr14:100184391 3'AG 100184391 Downstream 5bp
chr14 100184395 100184395 1 + C T UCEC 100184393 + 100184373 100184413 41 CGTCCTCCCTTCCCACAGGTCACGAGACCTCTGCCAACCAC CGTCCTCCCTTCCCACAGGTCATGAGACCTCTGCCAACCAC < 41bp 0.818458882354564 0.601345833587747 0.102081835 0.10444796 prediction 0.434226097533633 Functional Loss - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100184393 chr14:100184395 synonymous SNV . 0 23 hm5C_associated_SNPs_84003 0 0 0 0 2 CYP46A1 chr14:100184463 5'GT 100184463 Upstream 69bp
chr17 76201787 76201787 1 + G A BRCA 76201784 + 76201764 76201804 41 TCGTGGGCCAGTTCGACTCCCCCGAATTCCACCGACAGTCC TCGTGGGCCAGTTCGACTCCCCCAAATTCCACCGACAGTCC < 41bp 0.717111250748728 0.465208470278602 0.13868582 0.06961933 prediction 0.434222501497456 Functional Loss - AFMID ENSG00000183077 CDS Human protein_coding chr17:76201784 chr17:76201787 nonsynonymous SNV 0.677 4 24 hm5C_associated_SNPs_84005 0 0 0 0 2 AFMID chr17:76201819 5'GT 76201819 Upstream 33bp
chr17 76201787 76201787 1 + G A BRCA 76201784 + 76201764 76201804 41 TCGTGGGCCAGTTCGACTCCCCCGAATTCCACCGACAGTCC TCGTGGGCCAGTTCGACTCCCCCAAATTCCACCGACAGTCC < 41bp 0.717111250748728 0.465208470278602 0.13868582 0.06961933 prediction 0.434222501497456 Functional Loss - AFMID ENSG00000183077 CDS Human protein_coding chr17:76201784 chr17:76201787 nonsynonymous SNV 0.677 4 24 hm5C_associated_SNPs_84005 0 0 0 0 2 AFMID chr17:76201834 5'GT 76201834 Upstream 48bp
chr19 43859826 43859826 1 + G A BLCA 43859823 + 43859803 43859843 41 ACTTTCCTAGACCCAGGATCCTTGAGGTGCCCAGTCTGCTT ACTTTCCTAGACCCAGGATCCTTAAGGTGCCCAGTCTGCTT < 41bp 0.788399067637312 0.571288634180902 0.14127949 0.08928439 prediction 0.434220866912819 Functional Loss - CD177 ENSG00000204936 CDS Human protein_coding chr19:43859823 chr19:43859826 synonymous SNV . 0 24 hm5C_associated_SNPs_84006 0 0 0 0 1 CD177 chr19:43859813 3'AG 43859813 Downstream 14bp
chr16 2135263 2135263 1 + C T HNSC 2135261 + 2135241 2135281 41 TTGAGCGGTCGGTGCAGCTCCTCGACCAGATCCCATCATAC TTGAGCGGTCGGTGCAGCTCCTTGACCAGATCCCATCATAC < 41bp 0.717106920840853 0.434722854687662 0.24240643 0.20703647 prediction 0.434213841681706 Functional Loss - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2135261 chr16:2135263 synonymous SNV . 0 23 hm5C_associated_SNPs_84008 1 0 1 0 2 TSC2 chr16:2135231 3'AG 2135231 Downstream 33bp
chr16 2135263 2135263 1 + C T HNSC 2135261 + 2135241 2135281 41 TTGAGCGGTCGGTGCAGCTCCTCGACCAGATCCCATCATAC TTGAGCGGTCGGTGCAGCTCCTTGACCAGATCCCATCATAC < 41bp 0.717106920840853 0.434722854687662 0.24240643 0.20703647 prediction 0.434213841681706 Functional Loss - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2135261 chr16:2135263 synonymous SNV . 0 23 hm5C_associated_SNPs_84008 1 0 1 0 2 TSC2 chr16:2135323 5'GT 2135323 Upstream 61bp
chr10 133930651 133930651 1 + C T COAD 133930649 + 133930629 133930669 41 GAGCATGAGCAGCATAAGACCGCGGTCTTGCTCACGGAGCT GAGCATGAGCAGCATAAGACCGTGGTCTTGCTCACGGAGCT < 41bp 0.717099743453733 0.448215373583226 0.4178349 0.46203643 prediction 0.434199486907467 Functional Loss - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133930649 chr10:133930651 nonsynonymous SNV 0.004 1 23 hm5C_associated_SNPs_84011 0 0 0 0 1 JAKMIP3 chr10:133930581 3'AG 133930581 Downstream 71bp
chr11 70118312 70118312 1 + G T UCEC 70118308 + 70118288 70118328 41 GAGGTGATGCCGACCATCAGCGAAGCAGAAGGCCCCCCTGG GAGGTGATGCCGACCATCAGCGAATCAGAAGGCCCCCCTGG < 41bp 0.724075297640371 0.506977317414336 0.77922475 0.4731096 prediction 0.43419596045207 Functional Loss - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70118308 chr11:70118312 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_84013 0 0 1 0 1 PPFIA1 chr11:70118279 3'AG 70118279 Downstream 34bp
chr3 37376628 37376628 1 + G A BLCA 37376625 + 37376605 37376645 41 AGAAGAAATACCAGCAAAAGCTAGAGCAGGAGGAGAACCCT AGAAGAAATACCAGCAAAAGCTAAAGCAGGAGGAGAACCCT < 41bp 0.717087848940826 0.495355700102201 0.42371708 0.52614534 prediction 0.434175697881652 Functional Loss - GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37376625 chr3:37376628 nonsynonymous SNV 0.994 0 24 hm5C_associated_SNPs_84018 0 0 1 0 2 GOLGA4 chr3:37376544 3'AG 37376544 Downstream 85bp
chr3 37376628 37376628 1 + G A BLCA 37376625 + 37376605 37376645 41 AGAAGAAATACCAGCAAAAGCTAGAGCAGGAGGAGAACCCT AGAAGAAATACCAGCAAAAGCTAAAGCAGGAGGAGAACCCT < 41bp 0.717087848940826 0.495355700102201 0.42371708 0.52614534 prediction 0.434175697881652 Functional Loss - GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37376625 chr3:37376628 nonsynonymous SNV 0.994 0 24 hm5C_associated_SNPs_84018 0 0 1 0 2 GOLGA4 chr3:37376657 5'GT 37376657 Upstream 30bp
chr3 148727120 148727120 1 + G T BRCA 148727118 + 148727098 148727138 41 AGCTGGGCAACAACAGATATCAGAAAACACCTGCCGTTTAT AGCTGGGCAACAACAGATATCATAAAACACCTGCCGTTTAT < 41bp 0.717086526691524 0.388021093369433 0.2591675 0.098997295 prediction 0.434173053383048 Functional Loss - GYG1 ENSG00000163754 CDS Human protein_coding chr3:148727118 chr3:148727120 nonsynonymous SNV 0.988 0 23 hm5C_associated_SNPs_84019 0 0 0 0 1 GYG1 chr3:148727063 3'AG 148727063 Downstream 58bp
chrX 129053172 129053172 1 + G A ACC 129053169 + 129053149 129053189 41 AGGCAAGAACTCCCCTGGAGCAGGAAATTTTCAACCTCCTC AGGCAAGAACTCCCCTGGAGCAGAAAATTTTCAACCTCCTC < 41bp 0.772968907719681 0.555886061886212 0.4534274 0.19347012 prediction 0.434165691666939 Functional Loss - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129053169 chrX:129053172 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_84020 0 0 1 0 2 UTP14A chrX:129053151 3'AG 129053151 Downstream 22bp
chrX 129053172 129053172 1 + G A ACC 129053169 + 129053149 129053189 41 AGGCAAGAACTCCCCTGGAGCAGGAAATTTTCAACCTCCTC AGGCAAGAACTCCCCTGGAGCAGAAAATTTTCAACCTCCTC < 41bp 0.772968907719681 0.555886061886212 0.4534274 0.19347012 prediction 0.434165691666939 Functional Loss - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129053169 chrX:129053172 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_84020 0 0 1 0 2 UTP14A chrX:129053270 5'GT 129053270 Upstream 99bp
chr17 7533565 7533565 1 + C T COAD 7533563 + 7533543 7533583 41 TGCTACTACTGCGTCACACCCGCCAGGGATGGGCCCTGAGA TGCTACTACTGCGTCACACCCGTCAGGGATGGGCCCTGAGA < 41bp 0.72213438047627 0.505052169133864 0.37984884 0.17449251 prediction 0.43416442268481 Functional Loss - SHBG ENSG00000129214 CDS Human protein_coding chr17:7533563 chr17:7533565 synonymous SNV . 0 23 hm5C_associated_SNPs_84023 0 0 0 0 1 SHBG chr17:7533601 5'GT 7533601 Upstream 37bp
chrX 153678858 153678858 1 + C T rs782244383 153678856 + 153678836 153678876 41 TGTCACCGGGACTCCAGGCACCCGCTCCCCTGCGACCATGC TGTCACCGGGACTCCAGGCACCTGCTCCCCTGCGACCATGC < 41bp 0.733112057788589 0.516030255228872 0.0749225 0.1325554 prediction 0.434163605119434 Functional Loss - FAM50A ENSG00000071859 UTR3 Human protein_coding chrX:153678856 chrX:153678858 . . 0 23 hm5C_associated_SNPs_84024 0 0 1 0 1 FAM50A chrX:153678772 3'AG 153678772 Downstream 87bp
chr11 47311587 47311587 1 + G T HNSC 47311584 + 47311564 47311604 41 AGTCAGAGGACGATGCCCGGCAGGACATCATCCCGGATGTG AGTCAGAGGACGATGCCCGGCAGTACATCATCCCGGATGTG < 41bp 0.717071598108111 0.326754055666748 0.42024267 0.26210386 prediction 0.434143196216223 Functional Loss - MADD ENSG00000110514 CDS Human protein_coding chr11:47311584 chr11:47311587 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_84027 0 0 1 0 1 MADD chr11:47311604 5'GT 47311604 Upstream 18bp
chr1 165797073 165797073 1 + G T LUSC 165797070 + 165797050 165797090 41 GGAGGAGGGGCGGCGCGAACCATGGCCGGGGACAGCGAGCA GGAGGAGGGGCGGCGCGAACCATTGCCGGGGACAGCGAGCA < 41bp 0.810961662630356 0.593891904595609 0.34606606 0.15796131 prediction 0.434139516069495 Functional Loss - UCK2 ENSG00000143179 CDS Human protein_coding chr1:165797070 chr1:165797073 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_84031 0 0 1 0 1 UCK2 chr1:165797169 5'GT 165797169 Upstream 97bp
chr11 57460100 57460100 1 + G A SKCM 57460097 + 57460077 57460117 41 CTCTAGGTTACGGGTAAATTCCGGGGAGGTGTGAACCCCTT CTCTAGGTTACGGGTAAATTCCGAGGAGGTGTGAACCCCTT < 41bp 0.795634480331327 0.578565460293538 0.9112518 0.77890015 prediction 0.434138040075579 Functional Loss - ZDHHC5 ENSG00000156599 CDS Human protein_coding chr11:57460097 chr11:57460100 synonymous SNV . 0 24 hm5C_associated_SNPs_84033 0 0 1 0 2 ZDHHC5 chr11:57460083 3'AG 57460083 Downstream 18bp
chr11 57460100 57460100 1 + G A SKCM 57460097 + 57460077 57460117 41 CTCTAGGTTACGGGTAAATTCCGGGGAGGTGTGAACCCCTT CTCTAGGTTACGGGTAAATTCCGAGGAGGTGTGAACCCCTT < 41bp 0.795634480331327 0.578565460293538 0.9112518 0.77890015 prediction 0.434138040075579 Functional Loss - ZDHHC5 ENSG00000156599 CDS Human protein_coding chr11:57460097 chr11:57460100 synonymous SNV . 0 24 hm5C_associated_SNPs_84033 0 0 1 0 2 ZDHHC5 chr11:57460174 5'GT 57460174 Upstream 75bp
chr1 156618451 156618451 1 + G A CESC 156618448 + 156618428 156618468 41 CGGGGTGCAGAGATTGCCACCACGGGCCAACTGTATGCAGC CGGGGTGCAGAGATTGCCACCACAGGCCAACTGTATGCAGC < 41bp 0.717066139018421 0.46297718272036 0.33183107 0.24514133 prediction 0.434132278036842 Functional Loss - BCAN ENSG00000132692 CDS Human protein_coding chr1:156618448 chr1:156618451 synonymous SNV . 0 24 hm5C_associated_SNPs_84034 0 0 0 0 1 BCAN chr1:156618360 3'AG 156618360 Downstream 92bp
chr10 71657243 71657243 1 + A C STAD 71657242 + 71657222 71657262 41 CCAAACTAGGAGTGCCTAAGCAGCATGCCAGCAGCTCTGCG CCAAACTAGGAGTGCCTAAGCCGCATGCCAGCAGCTCTGCG < 41bp 0.783447637638071 0.566385088080902 0.26676422 0.22237006 prediction 0.434125099114338 Functional Loss - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71657242 chr10:71657243 nonsynonymous SNV 0.578 2 22 hm5C_associated_SNPs_84035 0 0 0 0 2 COL13A1 chr10:71657231 3'AG 71657231 Downstream 13bp
chr10 71657243 71657243 1 + A C STAD 71657242 + 71657222 71657262 41 CCAAACTAGGAGTGCCTAAGCAGCATGCCAGCAGCTCTGCG CCAAACTAGGAGTGCCTAAGCCGCATGCCAGCAGCTCTGCG < 41bp 0.783447637638071 0.566385088080902 0.26676422 0.22237006 prediction 0.434125099114338 Functional Loss - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71657242 chr10:71657243 nonsynonymous SNV 0.578 2 22 hm5C_associated_SNPs_84035 0 0 0 0 2 COL13A1 chr10:71657287 5'GT 71657287 Upstream 45bp
chr14 24909989 24909989 1 - C A STAD 24909991 - 24909971 24910011 41 ACGCCAGGTGGTGGTGCGCTCAGGTGAGAAACGGGCCTGGG ACGCCAGGTGGTGGTGCGCTCATGTGAGAAACGGGCCTGGG < 41bp 0.915750430793362 0.698688960796223 0.9104174 0.42870158 prediction 0.434122939994277 Functional Loss - SDR39U1 ENSG00000100445 CDS Human protein_coding chr14:24909991 chr14:24909989 nonsynonymous SNV 0.337 4 23 hm5C_associated_SNPs_84036 0 0 1 0 1 SDR39U1 chr14:24909989 5'GT 24909989 Upstream 1bp
chr13 26043168 26043168 1 + G A COAD 26043165 + 26043145 26043185 41 AGGCAGAGGATGAGATGTCCCGGGCCACGTCTGTTGGAGAC AGGCAGAGGATGAGATGTCCCGGACCACGTCTGTTGGAGAC < 41bp 0.731813532961602 0.51475224397806 0.88301456 0.40314487 prediction 0.434122577967085 Functional Loss - ATP8A2 ENSG00000132932 CDS Human protein_coding chr13:26043165 chr13:26043168 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_84037 0 0 0 0 1 ATP8A2 chr13:26043259 5'GT 26043259 Upstream 92bp
chr8 79510766 79510766 1 + G A DLBC 79510763 + 79510743 79510783 41 TTAGCAGGTCTTGATATCAACAAGACAGGTAAGTCATCTGG TTAGCAGGTCTTGATATCAACAAAACAGGTAAGTCATCTGG < 41bp 0.717059086734369 0.483565866386966 0.22898886 0.16308221 prediction 0.434118173468737 Functional Loss - PKIA ENSG00000171033 CDS Human protein_coding chr8:79510763 chr8:79510766 synonymous SNV . 0 24 hm5C_associated_SNPs_84039 0 0 1 0 1 PKIA chr8:79510770 5'GT 79510770 Upstream 5bp
chr5 21491555 21491555 1 + G A UCEC 21491552 + 21491532 21491572 41 CCCAGGGCCAGCTGAAGGTGCTGGGTGCCAACCTCTGGTGG CCCAGGGCCAGCTGAAGGTGCTGAGTGCCAACCTCTGGTGG < 41bp 0.783591380834108 0.566534720131692 0.89281845 0.6615229 prediction 0.434113321404832 Functional Loss - GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21491552 chr5:21491555 . . 0 24 hm5C_associated_SNPs_84041 0 0 0 0 1 GUSBP1 chr5:21491617 5'GT 21491617 Upstream 63bp
chr11 64973991 64973991 1 + C T UCEC 64973989 + 64973969 64974009 41 CTTCTTCCTGGCCAATGCGTCTCGGGCGCGCTCAGAGCAGT CTTCTTCCTGGCCAATGCGTCTTGGGCGCGCTCAGAGCAGT < 41bp 0.717055011168995 0.43638723057526 0.3696218 0.24821255 prediction 0.434110022337991 Functional Loss - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64973989 chr11:64973991 nonsynonymous SNV 0.186 2 23 hm5C_associated_SNPs_84044 0 0 1 0 1 CAPN1 chr11:64973934 3'AG 64973934 Downstream 58bp
chr12 100806577 100806577 1 + G A LUSC 100806574 + 100806554 100806594 41 GCATGGAGGCAACCTTACTCCTGGTGGTTGGCTTTTCGCAT GCATGGAGGCAACCTTACTCCTGATGGTTGGCTTTTCGCAT < 41bp 0.71705427292319 0.479194104248122 0.683988 0.2390058 prediction 0.43410854584638 Functional Loss - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100806574 chr12:100806577 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_84045 0 0 0 0 2 SLC17A8 chr12:100806548 3'AG 100806548 Downstream 30bp
chr12 100806577 100806577 1 + G A LUSC 100806574 + 100806554 100806594 41 GCATGGAGGCAACCTTACTCCTGGTGGTTGGCTTTTCGCAT GCATGGAGGCAACCTTACTCCTGATGGTTGGCTTTTCGCAT < 41bp 0.71705427292319 0.479194104248122 0.683988 0.2390058 prediction 0.43410854584638 Functional Loss - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100806574 chr12:100806577 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_84045 0 0 0 0 2 SLC17A8 chr12:100806658 5'GT 100806658 Upstream 82bp
chr11 117985944 117985944 1 + C T COAD 117985941 + 117985921 117985961 41 GATGCGTACCAGGGGGAAGTCACCGAGAAGATGATGTGTGC GATGCGTACCAGGGGGAAGTCACTGAGAAGATGATGTGTGC < 41bp 0.742446249142027 0.525392134250957 0.44475657 0.2819396 prediction 0.434108229782139 Functional Loss - TMPRSS4 ENSG00000137648 CDS Human protein_coding chr11:117985941 chr11:117985944 synonymous SNV . 0 24 hm5C_associated_SNPs_84046 0 0 0 0 2 TMPRSS4 chr11:117985853 3'AG 117985853 Downstream 92bp
chr11 117985944 117985944 1 + C T COAD 117985941 + 117985921 117985961 41 GATGCGTACCAGGGGGAAGTCACCGAGAAGATGATGTGTGC GATGCGTACCAGGGGGAAGTCACTGAGAAGATGATGTGTGC < 41bp 0.742446249142027 0.525392134250957 0.44475657 0.2819396 prediction 0.434108229782139 Functional Loss - TMPRSS4 ENSG00000137648 CDS Human protein_coding chr11:117985941 chr11:117985944 synonymous SNV . 0 24 hm5C_associated_SNPs_84046 0 0 0 0 2 TMPRSS4 chr11:117985995 5'GT 117985995 Upstream 52bp
chr1 116534747 116534747 1 + C T UCEC 116534745 + 116534725 116534765 41 AGCTCCTGCCAAATCAGAGCCACGGTAACCAGTCAGCTGGT AGCTCCTGCCAAATCAGAGCCATGGTAACCAGTCAGCTGGT < 41bp 0.717053788436828 0.433642661231476 0.4988801 0.4890848 prediction 0.434107576873655 Functional Loss - SLC22A15 ENSG00000163393 CDS Human protein_coding chr1:116534745 chr1:116534747 synonymous SNV . 0 23 hm5C_associated_SNPs_84047 0 0 1 0 1 SLC22A15 chr1:116534652 3'AG 116534652 Downstream 96bp
chr12 54338804 54338804 1 + G A HNSC 54338801 + 54338781 54338821 41 CAGACGTGGTTCCCCTGCAGCCCGAGGTGAGCAGCTACCGG CAGACGTGGTTCCCCTGCAGCCCAAGGTGAGCAGCTACCGG < 41bp 0.717051912398051 0.475013826939922 0.37237912 0.17149982 prediction 0.434103824796103 Functional Loss - HOXC13 ENSG00000123364 CDS Human protein_coding chr12:54338801 chr12:54338804 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_84048 0 0 1 0 1 HOXC13 chr12:54338784 3'AG 54338784 Downstream 21bp
chr1 91989636 91989636 1 + G T STAD 91989633 + 91989613 91989653 41 GTAGCAAAGAAGTTCCAGCACAAGACTTGAGAAAACTCTGT GTAGCAAAGAAGTTCCAGCACAATACTTGAGAAAACTCTGT < 41bp 0.71704911193082 0.342332458096357 0.11015868 0.094691485 prediction 0.43409822386164 Functional Loss - CDC7 ENSG00000097046 CDS Human protein_coding chr1:91989633 chr1:91989636 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_84050 0 0 1 0 1 CDC7 chr1:91989598 3'AG 91989598 Downstream 39bp
chr1 112240096 112240096 1 + G A SKCM 112240093 + 112240073 112240113 41 TCGATTGCCAACAGTGTATGCTCGAAATCCTGGATACTGCA TCGATTGCCAACAGTGTATGCTCAAAATCCTGGATACTGCA < 41bp 0.748483394257556 0.531436699098818 0.26227176 0.26996195 prediction 0.434093390317477 Functional Loss - RAP1A ENSG00000116473 CDS Human protein_coding chr1:112240093 chr1:112240096 nonsynonymous SNV 0.976 1 24 hm5C_associated_SNPs_84051 0 0 1 2 2 RAP1A chr1:112240063 3'AG 112240063 Downstream 34bp
chr1 112240096 112240096 1 + G A SKCM 112240093 + 112240073 112240113 41 TCGATTGCCAACAGTGTATGCTCGAAATCCTGGATACTGCA TCGATTGCCAACAGTGTATGCTCAAAATCCTGGATACTGCA < 41bp 0.748483394257556 0.531436699098818 0.26227176 0.26996195 prediction 0.434093390317477 Functional Loss - RAP1A ENSG00000116473 CDS Human protein_coding chr1:112240093 chr1:112240096 nonsynonymous SNV 0.976 1 24 hm5C_associated_SNPs_84051 0 0 1 2 2 RAP1A chr1:112240119 5'GT 112240119 Upstream 24bp
chr2 28352238 28352238 1 + G A GBM 28352235 + 28352215 28352255 41 CCCCAAGCTGTACTTGTCACCTCGAATTGAGCAGTAAGTGT CCCCAAGCTGTACTTGTCACCTCAAATTGAGCAGTAAGTGT < 41bp 0.724817672692247 0.507771461935328 0.9275971 0.2694475 prediction 0.434092421513837 Functional Loss - BABAM2 ENSG00000158019 CDS Human protein_coding chr2:28352235 chr2:28352238 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_84052 0 0 1 0 1 BABAM2 chr2:28352247 5'GT 28352247 Upstream 10bp
chr5 5057758 5057758 1 + G T UCEC 5057756 + 5057736 5057776 41 TGCGCTGCATCCCCAGAGTACAGCGAGTTTCCCGCCTCCCG TGCGCTGCATCCCCAGAGTACATCGAGTTTCCCGCCTCCCG < 41bp 0.717045408860823 0.372421334341991 0.5659087 0.3499093 prediction 0.434090817721646 Functional Loss - LINC01020 ENSG00000215231 ncRNA_exonic Human lincRNA chr5:5057756 chr5:5057758 . . 0 23 hm5C_associated_SNPs_84053 0 0 0 0 1 LINC01020 chr5:5057675 3'AG 5057675 Downstream 84bp
chr3 44905743 44905743 1 + C T ESCA 44905741 + 44905721 44905761 41 TGTGATGGCGAGCACCAATTCTCTGATGTGGACCTTCTTTA TGTGATGGCGAGCACCAATTCTTTGATGTGGACCTTCTTTA < 41bp 0.717038621178915 0.425919664685593 0.8000673 0.7407793 prediction 0.434077242357829 Functional Loss - TMEM42 ENSG00000169964 CDS Human protein_coding chr3:44905741 chr3:44905743 synonymous SNV . 0 23 hm5C_associated_SNPs_84056 0 0 1 0 2 TMEM42 chr3:44905689 3'AG 44905689 Downstream 55bp
chr3 44905743 44905743 1 + C T ESCA 44905741 + 44905721 44905761 41 TGTGATGGCGAGCACCAATTCTCTGATGTGGACCTTCTTTA TGTGATGGCGAGCACCAATTCTTTGATGTGGACCTTCTTTA < 41bp 0.717038621178915 0.425919664685593 0.8000673 0.7407793 prediction 0.434077242357829 Functional Loss - TMEM42 ENSG00000169964 CDS Human protein_coding chr3:44905741 chr3:44905743 synonymous SNV . 0 23 hm5C_associated_SNPs_84056 0 0 1 0 2 TMEM42 chr3:44905835 5'GT 44905835 Upstream 93bp
chr20 3783817 3783817 1 + C T UCEC 3783814 + 3783794 3783834 41 GATAAGTTTGTGATTGTAGACTGCAGATACCCCTATGAATA GATAAGTTTGTGATTGTAGACTGTAGATACCCCTATGAATA < 41bp 0.744310394402792 0.527279043528143 0.056648225 0.015938282 prediction 0.434062701749298 Functional Loss - CDC25B ENSG00000101224 CDS Human protein_coding chr20:3783814 chr20:3783817 synonymous SNV . 0 24 hm5C_associated_SNPs_84061 0 0 1 0 2 CDC25B chr20:3783755 3'AG 3783755 Downstream 63bp
chr20 3783817 3783817 1 + C T UCEC 3783814 + 3783794 3783834 41 GATAAGTTTGTGATTGTAGACTGCAGATACCCCTATGAATA GATAAGTTTGTGATTGTAGACTGTAGATACCCCTATGAATA < 41bp 0.744310394402792 0.527279043528143 0.056648225 0.015938282 prediction 0.434062701749298 Functional Loss - CDC25B ENSG00000101224 CDS Human protein_coding chr20:3783814 chr20:3783817 synonymous SNV . 0 24 hm5C_associated_SNPs_84061 0 0 1 0 2 CDC25B chr20:3783853 5'GT 3783853 Upstream 37bp
chr1 168550366 168550366 1 + G C rs534093034 168550362 + 168550342 168550382 41 GTGAGAGACGTGGTCAGGAGCATGGACAGGAAATCCAACAC GTGAGAGACGTGGTCAGGAGCATGCACAGGAAATCCAACAC < 41bp 0.856890701703751 0.639862984164115 0.45904425 0.2907009 prediction 0.434055435079272 Functional Loss - XCL1 ENSG00000143184 CDS Human protein_coding chr1:168550362 chr1:168550366 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_84064 0 0 0 0 1 XCL1 chr1:168550290 3'AG 168550290 Downstream 77bp
chr19 36027807 36027807 1 + C T UCEC 36027805 + 36027785 36027825 41 AGTCAGGGAGGAAATAAAGCCACCACCGCCACCACTGCCTC AGTCAGGGAGGAAATAAAGCCATCACCGCCACCACTGCCTC < 41bp 0.834775147572247 0.617748541357346 0.06925675 0.08664924 prediction 0.434053212429802 Functional Loss - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36027805 chr19:36027807 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_84066 0 0 0 0 2 GAPDHS chr19:36027715 3'AG 36027715 Downstream 93bp
chr19 36027807 36027807 1 + C T UCEC 36027805 + 36027785 36027825 41 AGTCAGGGAGGAAATAAAGCCACCACCGCCACCACTGCCTC AGTCAGGGAGGAAATAAAGCCATCACCGCCACCACTGCCTC < 41bp 0.834775147572247 0.617748541357346 0.06925675 0.08664924 prediction 0.434053212429802 Functional Loss - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36027805 chr19:36027807 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_84066 0 0 0 0 2 GAPDHS chr19:36027892 5'GT 36027892 Upstream 86bp
chr20 47592610 47592610 1 + G A BLCA 47592607 + 47592587 47592627 41 TGGGAAAGGCCTTGACATGGCAAGACGGTGTAGTGTGACGT TGGGAAAGGCCTTGACATGGCAAAACGGTGTAGTGTGACGT < 41bp 0.717021726783783 0.475792452154488 0.20605642 0.14056936 prediction 0.434043453567566 Functional Loss - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47592607 chr20:47592610 nonsynonymous SNV 0.942 0 24 hm5C_associated_SNPs_84068 0 0 1 0 1 ARFGEF2 chr20:47592553 3'AG 47592553 Downstream 58bp
chr18 59195263 59195263 1 + G A LUAD 59195260 + 59195240 59195280 41 TGGAGGGAGCCAATCCTCACCTAGAGATGCGTTTTCTGAAC TGGAGGGAGCCAATCCTCACCTAAAGATGCGTTTTCTGAAC < 41bp 0.778798973547433 0.561780194845308 0.21365097 0.06854668 prediction 0.43403755740425 Functional Loss - CDH20 ENSG00000101542 CDS Human protein_coding chr18:59195260 chr18:59195263 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_84071 0 0 0 0 1 CDH20 chr18:59195200 3'AG 59195200 Downstream 64bp
chr2 102626224 102626224 1 + G T KIRP 102626221 + 102626201 102626241 41 AAGAGACACGGATGTGGGCCCAGGACGGTGCTCTGTGGCTT AAGAGACACGGATGTGGGCCCAGTACGGTGCTCTGTGGCTT < 41bp 0.934697611314183 0.717686470015408 0.649378 0.29313606 prediction 0.43402228259755 Functional Loss - IL1R2 ENSG00000115590 CDS Human protein_coding chr2:102626221 chr2:102626224 nonsynonymous SNV 0.018 0 24 hm5C_associated_SNPs_84075 0 0 0 0 2 IL1R2 chr2:102626184 3'AG 102626184 Downstream 41bp
chr2 102626224 102626224 1 + G T KIRP 102626221 + 102626201 102626241 41 AAGAGACACGGATGTGGGCCCAGGACGGTGCTCTGTGGCTT AAGAGACACGGATGTGGGCCCAGTACGGTGCTCTGTGGCTT < 41bp 0.934697611314183 0.717686470015408 0.649378 0.29313606 prediction 0.43402228259755 Functional Loss - IL1R2 ENSG00000115590 CDS Human protein_coding chr2:102626221 chr2:102626224 nonsynonymous SNV 0.018 0 24 hm5C_associated_SNPs_84075 0 0 0 0 2 IL1R2 chr2:102626288 5'GT 102626288 Upstream 65bp
chr11 63988045 63988045 1 + G A rs3802932 63988042 + 63988022 63988062 41 CAGCGCACGGGCAGTGGGGGCCCGGGCAACCACCCCCACGG CAGCGCACGGGCAGTGGGGGCCCAGGCAACCACCCCCACGG < 41bp 0.810859519520534 0.593850546118249 0.8900932 0.8207978 prediction 0.434017946804571 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63988042 chr11:63988045 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_84076 0 1 1 0 1 FERMT3 chr11:63988141 5'GT 63988141 Upstream 97bp
chr7 50367306 50367306 1 + C T STAD 50367304 + 50367284 50367324 41 ATGCCGATCCCCGAGGACCTCTCCACCACCTCGGGAGGACA ATGCCGATCCCCGAGGACCTCTTCACCACCTCGGGAGGACA < 41bp 0.839427799292034 0.622423652418466 0.93716073 0.1699892 prediction 0.434008293747138 Functional Loss - IKZF1 ENSG00000185811 CDS Human protein_coding chr7:50367304 chr7:50367306 nonsynonymous SNV 0.845 4 23 hm5C_associated_SNPs_84078 0 0 1 0 1 IKZF1 chr7:50367353 5'GT 50367353 Upstream 48bp
chr17 6927056 6927056 1 + C T UCEC 6927053 + 6927033 6927073 41 CGCGAGTTCACTCGCCACTCCTCCGACGTGCTGGGCAACCT CGCGAGTTCACTCGCCACTCCTCTGACGTGCTGGGCAACCT < 41bp 0.732147095824133 0.51514365448755 0.34092143 0.3004918 prediction 0.434006882673165 Functional Loss - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6927053 chr17:6927056 synonymous SNV . 0 24 hm5C_associated_SNPs_84079 0 0 0 0 1 BCL6B chr17:6926979 3'AG 6926979 Downstream 78bp
chr13 40362559 40362559 1 + C T rs369715688 40362557 + 40362537 40362577 41 CCAGTTGTGGGAGGTGATGTCTCGGAAAACTCTGCCTTGGG CCAGTTGTGGGAGGTGATGTCTTGGAAAACTCTGCCTTGGG < 41bp 0.782096919052734 0.565094016215566 0.35202312 0.17941445 prediction 0.434005805674337 Functional Loss - COG6 ENSG00000133103 UTR3 Human protein_coding chr13:40362557 chr13:40362559 . . 0 23 hm5C_associated_SNPs_84080 0 0 1 0 1 COG6 chr13:40362472 3'AG 40362472 Downstream 88bp
chrX 155235138 155235138 1 + A T LUAD 155235134 + 155235114 155235154 41 CCTGTGTGCTTCCAGGCTCCCCAGAGACAAGGTGGGCACTG CCTGTGTGCTTCCAGGCTCCCCAGTGACAAGGTGGGCACTG < 41bp 0.717002252564197 0.405653514288902 0.9021716 0.25325757 prediction 0.434004505128394 Functional Loss - IL9R ENSG00000124334 CDS Human protein_coding chrX:155235134 chrX:155235138 stopgain 0.141 0 25 hm5C_associated_SNPs_84081 0 0 0 0 1 IL9R chrX:155235144 5'GT 155235144 Upstream 7bp
chr12 4722727 4722727 1 + G A rs143171709 4722724 + 4722704 4722744 41 GAGAAAACAAAAGATAGCCCCACGAAGCATGTTCAGCATTC GAGAAAACAAAAGATAGCCCCACAAAGCATGTTCAGCATTC < 41bp 0.768467998214499 0.551470452228193 0.08354518 0.056723893 prediction 0.433995091972613 Functional Loss - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4722724 chr12:4722727 synonymous SNV . 0 24 hm5C_associated_SNPs_84085 0 0 1 0 2 DYRK4 chr12:4722678 3'AG 4722678 Downstream 50bp
chr12 4722727 4722727 1 + G A rs143171709 4722724 + 4722704 4722744 41 GAGAAAACAAAAGATAGCCCCACGAAGCATGTTCAGCATTC GAGAAAACAAAAGATAGCCCCACAAAGCATGTTCAGCATTC < 41bp 0.768467998214499 0.551470452228193 0.08354518 0.056723893 prediction 0.433995091972613 Functional Loss - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4722724 chr12:4722727 synonymous SNV . 0 24 hm5C_associated_SNPs_84085 0 0 1 0 2 DYRK4 chr12:4722681 3'AG 4722681 Downstream 47bp
chr14 70442476 70442476 1 + G T LUAD 70442473 + 70442453 70442493 41 GGGTACTGCTGGTGTGTCACCCCGGATGGGAAGCCCATCAG GGGTACTGCTGGTGTGTCACCCCTGATGGGAAGCCCATCAG < 41bp 0.716997533878061 0.308848993072675 0.29778972 0.18058863 prediction 0.433995067756122 Functional Loss - SMOC1 ENSG00000198732 CDS Human protein_coding chr14:70442473 chr14:70442476 synonymous SNV . 0 24 hm5C_associated_SNPs_84086 0 0 1 0 2 SMOC1 chr14:70442432 3'AG 70442432 Downstream 45bp
chr14 70442476 70442476 1 + G T LUAD 70442473 + 70442453 70442493 41 GGGTACTGCTGGTGTGTCACCCCGGATGGGAAGCCCATCAG GGGTACTGCTGGTGTGTCACCCCTGATGGGAAGCCCATCAG < 41bp 0.716997533878061 0.308848993072675 0.29778972 0.18058863 prediction 0.433995067756122 Functional Loss - SMOC1 ENSG00000198732 CDS Human protein_coding chr14:70442473 chr14:70442476 synonymous SNV . 0 24 hm5C_associated_SNPs_84086 0 0 1 0 2 SMOC1 chr14:70442531 5'GT 70442531 Upstream 56bp
chr6 41606359 41606359 1 + G C rs538495726 41606358 + 41606338 41606378 41 GCGGGCCCCGCGCGGGGATCCGGCTGGAAGAGAGCGTAGCA GCGGGCCCCGCGCGGGGATCCCGCTGGAAGAGAGCGTAGCA < 41bp 0.839479582854142 0.622483403434652 0.83437145 0.2963536 prediction 0.433992358838979 Functional Loss - MDFI ENSG00000112559 UTR5 Human protein_coding chr6:41606358 chr6:41606359 . . 0 22 hm5C_associated_SNPs_84087 0 0 0 0 1 MDFI chr6:41606390 5'GT 41606390 Upstream 32bp
chr20 48553058 48553058 1 + G C CESC 48553057 + 48553037 48553077 41 CCCGTGTGCTTAGAGGTGTACGAGAAGCCGGTACAGGTGCC CCCGTGTGCTTAGAGGTGTACCAGAAGCCGGTACAGGTGCC < 41bp 0.844228678692569 0.627238414012854 0.663264 0.3823557 prediction 0.433980529359429 Functional Loss - RNF114 ENSG00000124226 CDS Human protein_coding chr20:48553057 chr20:48553058 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_84089 0 0 1 0 1 RNF114 chr20:48553089 5'GT 48553089 Upstream 32bp
chr6 44201185 44201185 1 + G T COAD 44201183 + 44201163 44201203 41 GCCAGCTGAGGCAGAGACCGCAGGAGCCATCATGGCCTTCT GCCAGCTGAGGCAGAGACCGCATGAGCCATCATGGCCTTCT < 41bp 0.899749554801391 0.68276888461523 0.8670145 0.15733564 prediction 0.433961340372323 Functional Loss - SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44201183 chr6:44201185 stopgain 0.974 1 23 hm5C_associated_SNPs_84095 0 0 1 0 1 SLC29A1 chr6:44201154 3'AG 44201154 Downstream 32bp
chr12 3129840 3129840 1 + G T LUAD 3129836 + 3129816 3129856 41 AGGGCCCGCCCCATCGCCCTCTGCGCCCCCGGCACCCCCAT AGGGCCCGCCCCATCGCCCTCTGCTCCCCCGGCACCCCCAT < 41bp 0.738046372900711 0.521068214355722 0.1997622 0.24736124 prediction 0.433956317089976 Functional Loss - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3129836 chr12:3129840 synonymous SNV . 0 25 hm5C_associated_SNPs_84096 0 0 1 0 1 TEAD4 chr12:3129939 5'GT 3129939 Upstream 100bp
chr11 65824803 65824803 1 + G A ESCA 65824800 + 65824780 65824820 41 GCCCATGGGAGCCCCTGTTCCCCGGCCTCGTGGTCCCCCAC GCCCATGGGAGCCCCTGTTCCCCAGCCTCGTGGTCCCCCAC < 41bp 0.812149677187801 0.595176386297602 0.22045347 0.07699141 prediction 0.433946581780398 Functional Loss - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824800 chr11:65824803 nonsynonymous SNV 0.876 1 24 hm5C_associated_SNPs_84099 0 0 1 0 2 SF3B2 chr11:65824737 3'AG 65824737 Downstream 67bp
chr11 65824803 65824803 1 + G A ESCA 65824800 + 65824780 65824820 41 GCCCATGGGAGCCCCTGTTCCCCGGCCTCGTGGTCCCCCAC GCCCATGGGAGCCCCTGTTCCCCAGCCTCGTGGTCCCCCAC < 41bp 0.812149677187801 0.595176386297602 0.22045347 0.07699141 prediction 0.433946581780398 Functional Loss - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824800 chr11:65824803 nonsynonymous SNV 0.876 1 24 hm5C_associated_SNPs_84099 0 0 1 0 2 SF3B2 chr11:65824846 5'GT 65824846 Upstream 44bp
chr3 119533921 119533921 1 + G A UCEC 119533918 + 119533898 119533938 41 CACAGTGTTCAATGCGGAGACTGGAACCTGGGAGTGTGGCC CACAGTGTTCAATGCGGAGACTGAAACCTGGGAGTGTGGCC < 41bp 0.792187463346415 0.575215406348679 0.60693085 0.52090263 prediction 0.433944113995473 Functional Loss - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119533918 chr3:119533921 nonsynonymous SNV 0.781 3 24 hm5C_associated_SNPs_84100 0 0 1 0 2 NR1I2 chr3:119533826 3'AG 119533826 Downstream 96bp
chr3 119533921 119533921 1 + G A UCEC 119533918 + 119533898 119533938 41 CACAGTGTTCAATGCGGAGACTGGAACCTGGGAGTGTGGCC CACAGTGTTCAATGCGGAGACTGAAACCTGGGAGTGTGGCC < 41bp 0.792187463346415 0.575215406348679 0.60693085 0.52090263 prediction 0.433944113995473 Functional Loss - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119533918 chr3:119533921 nonsynonymous SNV 0.781 3 24 hm5C_associated_SNPs_84100 0 0 1 0 2 NR1I2 chr3:119533968 5'GT 119533968 Upstream 48bp
chr10 70856853 70856853 1 + G C rs77483718 70856849 + 70856829 70856869 41 TCCTCGGGCAGGTTATCCTACGCGGAGAGCCAGGTACCAAT TCCTCGGGCAGGTTATCCTACGCGCAGAGCCAGGTACCAAT < 41bp 0.858983238935587 0.642012506875287 0.6023443 0.19512936 prediction 0.433941464120601 Functional Loss - SRGN ENSG00000122862 CDS Human protein_coding chr10:70856849 chr10:70856853 synonymous SNV . 0 25 hm5C_associated_SNPs_84101 0 0 1 0 1 SRGN chr10:70856840 3'AG 70856840 Downstream 14bp
chr2 182982010 182982010 1 + G T SARC 182982008 + 182981988 182982028 41 GCACCAATGAAAGAGAGGAGCAGCGGGACCATTAATTACTG GCACCAATGAAAGAGAGGAGCATCGGGACCATTAATTACTG < 41bp 0.716963491262023 0.36658167211271 0.13716006 0.015948802 prediction 0.433926982524046 Functional Loss - PPP1R1C ENSG00000150722 CDS Human protein_coding chr2:182982008 chr2:182982010 nonsynonymous SNV 0.987 0 23 hm5C_associated_SNPs_84103 0 0 0 0 2 PPP1R1C chr2:182981934 3'AG 182981934 Downstream 77bp
chr2 182982010 182982010 1 + G T SARC 182982008 + 182981988 182982028 41 GCACCAATGAAAGAGAGGAGCAGCGGGACCATTAATTACTG GCACCAATGAAAGAGAGGAGCATCGGGACCATTAATTACTG < 41bp 0.716963491262023 0.36658167211271 0.13716006 0.015948802 prediction 0.433926982524046 Functional Loss - PPP1R1C ENSG00000150722 CDS Human protein_coding chr2:182982008 chr2:182982010 nonsynonymous SNV 0.987 0 23 hm5C_associated_SNPs_84103 0 0 0 0 2 PPP1R1C chr2:182982028 5'GT 182982028 Upstream 19bp
chr19 56196954 56196954 1 + C T UCEC 56196951 + 56196931 56196971 41 TGCTGCGCGACGAGGACCGGCTGCGGGAAGAGCGGGCGCAC TGCTGCGCGACGAGGACCGGCTGTGGGAAGAGCGGGCGCAC < 41bp 0.716960371934058 0.495005870923608 0.7849189 0.43914187 prediction 0.433920743868117 Functional Loss - EPN1 ENSG00000063245 CDS Human protein_coding chr19:56196951 chr19:56196954 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_84105 0 0 1 0 1 EPN1 chr19:56197011 5'GT 56197011 Upstream 58bp
chr4 37848660 37848660 1 + G A rs146573335 37848657 + 37848637 37848677 41 GATCGCAGTGCTCTCAAAGACACGTACATGTTGTCCAGCAC GATCGCAGTGCTCTCAAAGACACATACATGTTGTCCAGCAC < 41bp 0.771735593740057 0.55477721039431 0.1203374 0.02181822 prediction 0.433916766691494 Functional Loss - PGM2 ENSG00000169299 CDS Human protein_coding chr4:37848657 chr4:37848660 synonymous SNV . 0 24 hm5C_associated_SNPs_84107 0 0 1 0 1 PGM2 chr4:37848732 5'GT 37848732 Upstream 73bp
chr11 132204977 132204977 1 + G C LUAD 132204976 + 132204956 132204996 41 CGAGGTGAGCAACGGCACGTCGAGGAGGGCAGGCTGCGTCT CGAGGTGAGCAACGGCACGTCCAGGAGGGCAGGCTGCGTCT < 41bp 0.716957854826551 0.476977406394866 0.64446783 0.2087254 prediction 0.433915709653101 Functional Loss - NTM ENSG00000182667 CDS Human protein_coding chr11:132204976 chr11:132204977 synonymous SNV . 0 22 hm5C_associated_SNPs_84110 0 0 0 0 1 NTM chr11:132204940 3'AG 132204940 Downstream 38bp
chr19 1080312 1080312 1 + G A COAD 1080309 + 1080289 1080329 41 ACGTGAGTGATGTGGCGCGGCCGGAGGCTGCCGGGAGCCCC ACGTGAGTGATGTGGCGCGGCCGAAGGCTGCCGGGAGCCCC < 41bp 0.804048859751043 0.587091225496226 0.7182499 0.44131243 prediction 0.433915268509633 Functional Loss - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1080309 chr19:1080312 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_84111 0 0 1 0 2 ARHGAP45 chr19:1080254 3'AG 1080254 Downstream 59bp
chr19 1080312 1080312 1 + G A COAD 1080309 + 1080289 1080329 41 ACGTGAGTGATGTGGCGCGGCCGGAGGCTGCCGGGAGCCCC ACGTGAGTGATGTGGCGCGGCCGAAGGCTGCCGGGAGCCCC < 41bp 0.804048859751043 0.587091225496226 0.7182499 0.44131243 prediction 0.433915268509633 Functional Loss - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1080309 chr19:1080312 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_84111 0 0 1 0 2 ARHGAP45 chr19:1080378 5'GT 1080378 Upstream 67bp
chr16 14755881 14755881 1 + C T CESC 14755878 + 14755858 14755898 41 TCATCCACACCATCTGCCCTCTGCAAGAAGACAGCTCTGGG TCATCCACACCATCTGCCCTCTGTAAGAAGACAGCTCTGGG < 41bp 0.78198536985767 0.565047184166308 0.17491084 0.03337899 prediction 0.433876371382724 Functional Loss - BFAR ENSG00000103429 CDS Human protein_coding chr16:14755878 chr16:14755881 stopgain 0.981 0 24 hm5C_associated_SNPs_84122 0 0 1 0 1 BFAR chr16:14755922 5'GT 14755922 Upstream 42bp
chr1 32542835 32542835 1 + C T LGG 32542833 + 32542813 32542853 41 CTCACTCGCTTCACCGTTCTCACGGCAACAGGCTGGAGTCT CTCACTCGCTTCACCGTTCTCATGGCAACAGGCTGGAGTCT < 41bp 0.837029642089159 0.620092690749312 0.56431085 0.7103311 prediction 0.433873902679693 Functional Loss - TMEM39B ENSG00000121775 CDS Human protein_coding chr1:32542833 chr1:32542835 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_84123 0 0 0 0 2 TMEM39B chr1:32542765 3'AG 32542765 Downstream 71bp
chr1 32542835 32542835 1 + C T LGG 32542833 + 32542813 32542853 41 CTCACTCGCTTCACCGTTCTCACGGCAACAGGCTGGAGTCT CTCACTCGCTTCACCGTTCTCATGGCAACAGGCTGGAGTCT < 41bp 0.837029642089159 0.620092690749312 0.56431085 0.7103311 prediction 0.433873902679693 Functional Loss - TMEM39B ENSG00000121775 CDS Human protein_coding chr1:32542833 chr1:32542835 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_84123 0 0 0 0 2 TMEM39B chr1:32542919 5'GT 32542919 Upstream 85bp
chr22 30812280 30812280 1 + G A SKCM 30812277 + 30812257 30812297 41 TTTGGGATTTTCCTGAAGACCAAGATGGGAGAGAGGCAGCG TTTGGGATTTTCCTGAAGACCAAAATGGGAGAGAGGCAGCG < 41bp 0.78317883975247 0.56624669124473 0.21243185 0.19129837 prediction 0.433864297015479 Functional Loss - SEC14L2 ENSG00000100003;ENSG00000249590 CDS Human other chr22:30812277 chr22:30812280 synonymous SNV . 0 24 hm5C_associated_SNPs_84124 0 0 1 0 1 SEC14L2 chr22:30812223 3'AG 30812223 Downstream 58bp
chr19 3532060 3532060 1 + C T rs61731108 3532058 + 3532038 3532078 41 GGCTCAAGTGGTCCACAGACCACCAGCTCCTCGCCTCGGGG GGCTCAAGTGGTCCACAGACCATCAGCTCCTCGCCTCGGGG < 41bp 0.716925401273785 0.446224577864873 0.17375249 0.099739045 prediction 0.43385080254757 Functional Loss - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3532058 chr19:3532060 synonymous SNV . 0 23 hm5C_associated_SNPs_84128 0 0 1 0 1 FZR1 chr19:3532093 5'GT 3532093 Upstream 34bp
chr8 418752 418752 1 + G T SARC 418750 + 418730 418770 41 TGCACGGCGGCCGACCCTGACAGCTGCTTCACGCCTGTGTC TGCACGGCGGCCGACCCTGACATCTGCTTCACGCCTGTGTC < 41bp 0.716923048443322 0.364845647776372 0.45848563 0.040088862 prediction 0.433846096886645 Functional Loss - FBXO25 ENSG00000147364 CDS Human protein_coding chr8:418750 chr8:418752 nonsynonymous SNV 0.884 2 23 hm5C_associated_SNPs_84129 0 0 0 0 1 FBXO25 chr8:418715 3'AG 418715 Downstream 38bp
chr1 158151307 158151307 1 + A T UCEC 158151303 + 158151283 158151323 41 TCGTCCTTCGCCAATAGCAGCTGGACGCGCACCGACGGCTT TCGTCCTTCGCCAATAGCAGCTGGTCGCGCACCGACGGCTT < 41bp 0.892870463985323 0.675947564075263 0.80500364 0.3967719 prediction 0.433845799820119 Functional Loss - CD1D ENSG00000158473 CDS Human protein_coding chr1:158151303 chr1:158151307 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_84130 0 0 0 0 2 CD1D chr1:158151245 3'AG 158151245 Downstream 63bp
chr1 158151307 158151307 1 + A T UCEC 158151303 + 158151283 158151323 41 TCGTCCTTCGCCAATAGCAGCTGGACGCGCACCGACGGCTT TCGTCCTTCGCCAATAGCAGCTGGTCGCGCACCGACGGCTT < 41bp 0.892870463985323 0.675947564075263 0.80500364 0.3967719 prediction 0.433845799820119 Functional Loss - CD1D ENSG00000158473 CDS Human protein_coding chr1:158151303 chr1:158151307 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_84130 0 0 0 0 2 CD1D chr1:158151280 3'AG 158151280 Downstream 28bp
chr8 21777226 21777226 1 + G T rs543608753 21777224 + 21777204 21777244 41 GGCGGCGGCGGCAGCGGCTCCGGCCGAGGTGCGCGCTGGGG GGCGGCGGCGGCAGCGGCTCCGTCCGAGGTGCGCGCTGGGG < 41bp 0.882558931814857 0.665638116996263 0.8373188 0.4103993 prediction 0.433841629637188 Functional Loss - XPO7 ENSG00000130227 UTR5 Human protein_coding chr8:21777224 chr8:21777226 . . 0 23 hm5C_associated_SNPs_84132 0 0 1 0 1 XPO7 chr8:21777299 5'GT 21777299 Upstream 74bp
chr10 71582173 71582173 1 + C T SKCM 71582171 + 71582151 71582191 41 CCGGGAGGCCCCAAAGACATCTCCAGGATGTAACTGCCCAC CCGGGAGGCCCCAAAGACATCTTCAGGATGTAACTGCCCAC < 41bp 0.855628318323082 0.638708954937404 0.89944154 0.31587422 prediction 0.433838726771355 Functional Loss - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71582171 chr10:71582173 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_84134 0 0 0 0 2 COL13A1 chr10:71582125 3'AG 71582125 Downstream 49bp
chr10 71582173 71582173 1 + C T SKCM 71582171 + 71582151 71582191 41 CCGGGAGGCCCCAAAGACATCTCCAGGATGTAACTGCCCAC CCGGGAGGCCCCAAAGACATCTTCAGGATGTAACTGCCCAC < 41bp 0.855628318323082 0.638708954937404 0.89944154 0.31587422 prediction 0.433838726771355 Functional Loss - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71582171 chr10:71582173 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_84134 0 0 0 0 2 COL13A1 chr10:71582194 5'GT 71582194 Upstream 22bp
chr1 6636606 6636606 1 + G A UCEC 6636603 + 6636583 6636623 41 AATGGACCCAAGTGGACCTTCACGGTCCTCGGTTCCTCCAC AATGGACCCAAGTGGACCTTCACAGTCCTCGGTTCCTCCAC < 41bp 0.789957123358174 0.573037825794383 0.23770344 0.18313 prediction 0.433838595127581 Functional Loss - TAS1R1 ENSG00000173662 CDS Human protein_coding chr1:6636603 chr1:6636606 synonymous SNV . 0 24 hm5C_associated_SNPs_84135 0 0 0 0 1 TAS1R1 chr1:6636687 5'GT 6636687 Upstream 82bp
chr19 22779191 22779191 1 + G A UCEC 22779188 + 22779168 22779208 41 CCCTGCCATGTCGGAAGAAACCCGACGAGCAAATTGGCAGC CCCTGCCATGTCGGAAGAAACCCAACGAGCAAATTGGCAGC < 41bp 0.736922650333488 0.520004592495078 0.43527132 0.33464906 prediction 0.433836115676819 Functional Loss - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22779188 chr19:22779191 . . 0 24 hm5C_associated_SNPs_84137 0 0 0 0 1 GOLGA2P9 chr19:22779221 5'GT 22779221 Upstream 31bp
chr20 18576812 18576812 1 + G A UCEC 18576809 + 18576789 18576829 41 GATTTCCACCTAGCAATGCCCACGGAGCAGGCAGAGGGCTT GATTTCCACCTAGCAATGCCCACAGAGCAGGCAGAGGGCTT < 41bp 0.786193478248296 0.569276912226525 0.113141805 0.02416107 prediction 0.433833132043543 Functional Loss - DTD1 ENSG00000125821 CDS Human protein_coding chr20:18576809 chr20:18576812 synonymous SNV . 0 24 hm5C_associated_SNPs_84139 0 0 1 0 1 DTD1 chr20:18576885 5'GT 18576885 Upstream 74bp
chr4 152507926 152507926 1 + T C LIHC 152507925 + 152507905 152507945 41 TTGTCCAGTTCATGAACTCCCTGGAGTTTTGCAATGCAGTC TTGTCCAGTTCATGAACTCCCCGGAGTTTTGCAATGCAGTC < 41bp 0.793190022876542 0.57627681122871 0.16418093 0.3904221 prediction 0.433826423295664 Functional Loss - FAM160A1 ENSG00000164142 CDS Human protein_coding chr4:152507925 chr4:152507926 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_84142 0 0 0 0 1 FAM160A1 chr4:152507951 5'GT 152507951 Upstream 26bp
chr2 79253877 79253877 1 + A C rs544822421 79253876 + 79253856 79253896 41 GAACTGCCCTCTCCACGGATCAGCTGTCCCAAAGGCTCCAA GAACTGCCCTCTCCACGGATCCGCTGTCCCAAAGGCTCCAA < 41bp 0.71690967175351 0.444874084393343 0.12857729 0.05955884 prediction 0.433819343507019 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79253876 chr2:79253877 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_84143 0 0 0 0 2 REG3G chr2:79253839 3'AG 79253839 Downstream 39bp
chr2 79253877 79253877 1 + A C rs544822421 79253876 + 79253856 79253896 41 GAACTGCCCTCTCCACGGATCAGCTGTCCCAAAGGCTCCAA GAACTGCCCTCTCCACGGATCCGCTGTCCCAAAGGCTCCAA < 41bp 0.71690967175351 0.444874084393343 0.12857729 0.05955884 prediction 0.433819343507019 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79253876 chr2:79253877 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_84143 0 0 0 0 2 REG3G chr2:79253957 5'GT 79253957 Upstream 81bp
chr16 31123463 31123463 1 + G A UCEC 31123460 + 31123440 31123480 41 AGCTTTGGCTTCGGGTTGCCCACGTCACGGGCCTACGCGGA AGCTTTGGCTTCGGGTTGCCCACATCACGGGCCTACGCGGA < 41bp 0.804509325296282 0.587605412447298 0.077445865 0.030622065 prediction 0.433807825697968 Functional Loss - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31123460 chr16:31123463 synonymous SNV . 0 24 hm5C_associated_SNPs_84147 0 0 1 0 1 BCKDK chr16:31123442 3'AG 31123442 Downstream 22bp
chr3 172534549 172534549 1 + C T LUSC 172534547 + 172534527 172534567 41 GAAGGGCTCTTATGACATCCCACGGCTCAGTGGAGGGAAGA GAAGGGCTCTTATGACATCCCATGGCTCAGTGGAGGGAAGA < 41bp 0.716903505629098 0.432736749023842 0.054136544 0.047057718 prediction 0.433807011258195 Functional Loss - ECT2 ENSG00000114346 CDS Human protein_coding chr3:172534547 chr3:172534549 synonymous SNV . 0 23 hm5C_associated_SNPs_84148 0 0 1 0 2 ECT2 chr3:172534481 3'AG 172534481 Downstream 69bp
chr3 172534549 172534549 1 + C T LUSC 172534547 + 172534527 172534567 41 GAAGGGCTCTTATGACATCCCACGGCTCAGTGGAGGGAAGA GAAGGGCTCTTATGACATCCCATGGCTCAGTGGAGGGAAGA < 41bp 0.716903505629098 0.432736749023842 0.054136544 0.047057718 prediction 0.433807011258195 Functional Loss - ECT2 ENSG00000114346 CDS Human protein_coding chr3:172534547 chr3:172534549 synonymous SNV . 0 23 hm5C_associated_SNPs_84148 0 0 1 0 2 ECT2 chr3:172534627 5'GT 172534627 Upstream 79bp
chr3 32181853 32181853 1 + C T COAD 32181851 + 32181831 32181871 41 GCAGAGAAGTTCTGTGAGACCACCATCGGTAAGCACTGCCT GCAGAGAAGTTCTGTGAGACCATCATCGGTAAGCACTGCCT < 41bp 0.86097715965152 0.644073670267131 0.12345159 0.12369931 prediction 0.433806978768776 Functional Loss - GPD1L ENSG00000152642 CDS Human protein_coding chr3:32181851 chr3:32181853 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_84149 0 0 0 0 1 GPD1L chr3:32181858 5'GT 32181858 Upstream 6bp
chr9 140051461 140051461 1 + A T LUAD 140051457 + 140051437 140051477 41 CGGGGCTGCGTGGGCAACACCAACATCTGGAAGACCGGGCC CGGGGCTGCGTGGGCAACACCAACTTCTGGAAGACCGGGCC < 41bp 0.748182132508855 0.531286790975309 0.27615625 0.31914493 prediction 0.433790683067092 Functional Loss - GRIN1 ENSG00000176884 CDS Human protein_coding chr9:140051457 chr9:140051461 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_84150 0 0 0 0 1 GRIN1 chr9:140051489 5'GT 140051489 Upstream 29bp
chr22 31019043 31019043 1 + C T ESCA 31019040 + 31019020 31019060 41 AAAGGGAGTTCTGGCAGCTTCTCCGAGACCCCAACACCCCA AAAGGGAGTTCTGGCAGCTTCTCTGAGACCCCAACACCCCA < 41bp 0.740326173539163 0.523431840146865 0.39348903 0.3595441 prediction 0.433788666784596 Functional Loss - TCN2 ENSG00000185339 CDS Human protein_coding chr22:31019040 chr22:31019043 stopgain 0.629 0 24 hm5C_associated_SNPs_84151 0 0 0 0 2 TCN2 chr22:31018955 3'AG 31018955 Downstream 89bp
chr22 31019043 31019043 1 + C T ESCA 31019040 + 31019020 31019060 41 AAAGGGAGTTCTGGCAGCTTCTCCGAGACCCCAACACCCCA AAAGGGAGTTCTGGCAGCTTCTCTGAGACCCCAACACCCCA < 41bp 0.740326173539163 0.523431840146865 0.39348903 0.3595441 prediction 0.433788666784596 Functional Loss - TCN2 ENSG00000185339 CDS Human protein_coding chr22:31019040 chr22:31019043 stopgain 0.629 0 24 hm5C_associated_SNPs_84151 0 0 0 0 2 TCN2 chr22:31019070 5'GT 31019070 Upstream 28bp
chr15 49487332 49487332 1 + G A rs151334901 49487329 + 49487309 49487349 41 GGAGGCTAGAGTGCAAGTGGCACGATCTTGGCTCACTGCAA GGAGGCTAGAGTGCAAGTGGCACAATCTTGGCTCACTGCAA < 41bp 0.798135204688976 0.58124097150293 0.3374778 0.17286664 prediction 0.433788466372092 Functional Loss - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49487329 chr15:49487332 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_84152 0 0 0 0 2 GALK2 chr15:49487282 3'AG 49487282 Downstream 51bp
chr15 49487332 49487332 1 + G A rs151334901 49487329 + 49487309 49487349 41 GGAGGCTAGAGTGCAAGTGGCACGATCTTGGCTCACTGCAA GGAGGCTAGAGTGCAAGTGGCACAATCTTGGCTCACTGCAA < 41bp 0.798135204688976 0.58124097150293 0.3374778 0.17286664 prediction 0.433788466372092 Functional Loss - GALK2 ENSG00000156958 CDS Human other chr15:49487329 chr15:49487332 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_84152 0 0 0 0 2 GALK2 chr15:49487411 5'GT 49487411 Upstream 80bp
chr6 151939118 151939118 1 + G T LUSC 151939115 + 151939095 151939135 41 GGGAGGTGGTGTCGCAGATGCTAGGCTTGAACGTGACCAGC GGGAGGTGGTGTCGCAGATGCTATGCTTGAACGTGACCAGC < 41bp 0.71689373386647 0.326265846899838 0.42480785 0.12890375 prediction 0.43378746773294 Functional Loss - CCDC170 ENSG00000120262 CDS Human protein_coding chr6:151939115 chr6:151939118 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_84153 0 0 0 0 1 CCDC170 chr6:151939082 3'AG 151939082 Downstream 37bp
chr19 15806828 15806828 1 + C T BLCA 15806826 + 15806806 15806846 41 TCCCCCAGCTCCCTTCATCTCCCGATGCTGCACCCAGGACA TCCCCCAGCTCCCTTCATCTCCTGATGCTGCACCCAGGACA < 41bp 0.854820552739237 0.637929586498684 0.17571878 0.27867228 prediction 0.433781932481107 Functional Loss - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15806826 chr19:15806828 stopgain 0.175 0 23 hm5C_associated_SNPs_84155 0 0 1 0 2 CYP4F12 chr19:15806746 3'AG 15806746 Downstream 83bp
chr19 15806828 15806828 1 + C T BLCA 15806826 + 15806806 15806846 41 TCCCCCAGCTCCCTTCATCTCCCGATGCTGCACCCAGGACA TCCCCCAGCTCCCTTCATCTCCTGATGCTGCACCCAGGACA < 41bp 0.854820552739237 0.637929586498684 0.17571878 0.27867228 prediction 0.433781932481107 Functional Loss - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15806826 chr19:15806828 stopgain 0.175 0 23 hm5C_associated_SNPs_84155 0 0 1 0 2 CYP4F12 chr19:15806879 5'GT 15806879 Upstream 52bp
chr21 37788602 37788602 1 + C T LUSC 37788600 + 37788580 37788620 41 TGGAGACGCTCAGGGCAGTCCCCCAGAGCTAAAGCGGCCCA TGGAGACGCTCAGGGCAGTCCCTCAGAGCTAAAGCGGCCCA < 41bp 0.71688858111637 0.435461775254136 0.30076295 0.17284447 prediction 0.43377716223274 Functional Loss - CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37788600 chr21:37788602 nonsynonymous SNV 0.067 2 23 hm5C_associated_SNPs_84157 0 0 0 0 1 CHAF1B chr21:37788573 3'AG 37788573 Downstream 30bp
chr4 119161758 119161758 1 + C T UCEC 119161756 + 119161736 119161776 41 TCAGCAGGGCCCCGTGCACCCTCGGAGCTCAGAGCCTTGCA TCAGCAGGGCCCCGTGCACCCTTGGAGCTCAGAGCCTTGCA < 41bp 0.850044944576084 0.633160400872204 0.114628464 0.042235285 prediction 0.43376908740776 Functional Loss - NDST3 ENSG00000164100 CDS Human protein_coding chr4:119161756 chr4:119161758 nonsynonymous SNV 0.005 0 23 hm5C_associated_SNPs_84159 0 0 0 0 2 NDST3 chr4:119161679 3'AG 119161679 Downstream 80bp
chr4 119161758 119161758 1 + C T UCEC 119161756 + 119161736 119161776 41 TCAGCAGGGCCCCGTGCACCCTCGGAGCTCAGAGCCTTGCA TCAGCAGGGCCCCGTGCACCCTTGGAGCTCAGAGCCTTGCA < 41bp 0.850044944576084 0.633160400872204 0.114628464 0.042235285 prediction 0.43376908740776 Functional Loss - NDST3 ENSG00000164100 CDS Human protein_coding chr4:119161756 chr4:119161758 nonsynonymous SNV 0.005 0 23 hm5C_associated_SNPs_84159 0 0 0 0 2 NDST3 chr4:119161849 5'GT 119161849 Upstream 92bp
chrX 100666979 100666979 1 + G T UCEC 100666976 + 100666956 100666996 41 ACCAAGAGCCCAACAATCACCATGATGCTGAGCACGGAAGG ACCAAGAGCCCAACAATCACCATTATGCTGAGCACGGAAGG < 41bp 0.811639086252203 0.594757699832634 0.0513089 0.031404197 prediction 0.433762772839139 Functional Loss - HNRNPH2;RPL36A-HNRNPH2 ENSG00000126945;ENSG00000257529 CDS Human protein_coding chrX:100666976 chrX:100666979 stoploss 0.996 2 24 hm5C_associated_SNPs_84162 0 0 1 0 1 RPL36A-HNRNPH2 chrX:100666924 3'AG 100666924 Downstream 56bp
chr22 42120046 42120046 1 + G A SKCM 42120043 + 42120023 42120063 41 TAAGAATATCGAAGGGTCATCAGGAAATACCTCACTGCCTT TAAGAATATCGAAGGGTCATCAGAAAATACCTCACTGCCTT < 41bp 0.752017387372786 0.535138348589463 0.9049102 0.8848618 prediction 0.433758077566645 Functional Loss - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42120043 chr22:42120046 nonsynonymous SNV 0.162 0 24 hm5C_associated_SNPs_84166 0 0 0 5 2 MEI1 chr22:42119947 3'AG 42119947 Downstream 100bp
chr22 42120046 42120046 1 + G A SKCM 42120043 + 42120023 42120063 41 TAAGAATATCGAAGGGTCATCAGGAAATACCTCACTGCCTT TAAGAATATCGAAGGGTCATCAGAAAATACCTCACTGCCTT < 41bp 0.752017387372786 0.535138348589463 0.9049102 0.8848618 prediction 0.433758077566645 Functional Loss - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42120043 chr22:42120046 nonsynonymous SNV 0.162 0 24 hm5C_associated_SNPs_84166 0 0 0 5 2 MEI1 chr22:42120077 5'GT 42120077 Upstream 32bp
chr11 65029813 65029813 1 + T C COAD 65029812 + 65029792 65029832 41 AGGAGCTGCAGATCTTCGGCCTAGACTGCGAGGAGGCTCTA AGGAGCTGCAGATCTTCGGCCCAGACTGCGAGGAGGCTCTA < 41bp 0.773055881832352 0.556178505341465 0.08201578 0.08833486 prediction 0.433754752981774 Functional Loss - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65029812 chr11:65029813 nonsynonymous SNV 0.904 1 22 hm5C_associated_SNPs_84168 0 0 1 0 1 POLA2 chr11:65029842 5'GT 65029842 Upstream 30bp
chr1 177199273 177199273 1 + G A SKCM 177199270 + 177199250 177199290 41 CAGGGTTTCACCACCAGGTACAGGATTTATAGGTAAGTGGG CAGGGTTTCACCACCAGGTACAGAATTTATAGGTAAGTGGG < 41bp 0.716876554312755 0.473899231169416 0.91504675 0.89757895 prediction 0.433753108625511 Functional Loss - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177199270 chr1:177199273 synonymous SNV . 0 24 hm5C_associated_SNPs_84170 0 0 0 0 1 BRINP2 chr1:177199281 5'GT 177199281 Upstream 9bp
chr5 148681999 148681999 1 + C T SARC 148681997 + 148681977 148682017 41 GCAGGCGGCCGACCTGCCTCCACCGCTCCCCAACAAGCCTC GCAGGCGGCCGACCTGCCTCCATCGCTCCCCAACAAGCCTC < 41bp 0.716873865938162 0.438460193183222 0.16151693 0.070077 prediction 0.433747731876324 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148681997 chr5:148681999 nonsynonymous SNV 0.032 3 23 hm5C_associated_SNPs_84173 0 0 0 0 2 AFAP1L1 chr5:148681981 3'AG 148681981 Downstream 19bp
chr5 148681999 148681999 1 + C T SARC 148681997 + 148681977 148682017 41 GCAGGCGGCCGACCTGCCTCCACCGCTCCCCAACAAGCCTC GCAGGCGGCCGACCTGCCTCCATCGCTCCCCAACAAGCCTC < 41bp 0.716873865938162 0.438460193183222 0.16151693 0.070077 prediction 0.433747731876324 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148681997 chr5:148681999 nonsynonymous SNV 0.032 3 23 hm5C_associated_SNPs_84173 0 0 0 0 2 AFAP1L1 chr5:148682089 5'GT 148682089 Upstream 91bp
chr11 58714617 58714617 1 + G A UCEC 58714614 + 58714594 58714634 41 GCCCTATACAAATCCTTGGCCAGGAGCATCCCTGAGTCCCT GCCCTATACAAATCCTTGGCCAGAAGCATCCCTGAGTCCCT < 41bp 0.777916013399098 0.561044121121823 0.7675445 0.2618512 prediction 0.433743784554549 Functional Loss - GLYATL1 ENSG00000166840 CDS Human protein_coding chr11:58714614 chr11:58714617 synonymous SNV . 0 24 hm5C_associated_SNPs_84174 0 0 0 0 2 GLYATL1 chr11:58714519 3'AG 58714519 Downstream 99bp
chr11 58714617 58714617 1 + G A UCEC 58714614 + 58714594 58714634 41 GCCCTATACAAATCCTTGGCCAGGAGCATCCCTGAGTCCCT GCCCTATACAAATCCTTGGCCAGAAGCATCCCTGAGTCCCT < 41bp 0.777916013399098 0.561044121121823 0.7675445 0.2618512 prediction 0.433743784554549 Functional Loss - GLYATL1 ENSG00000166840 CDS Human protein_coding chr11:58714614 chr11:58714617 synonymous SNV . 0 24 hm5C_associated_SNPs_84174 0 0 0 0 2 GLYATL1 chr11:58714638 5'GT 58714638 Upstream 22bp
chr22 51195669 51195669 1 + A C rs186888441 51195668 + 51195648 51195688 41 TGAACCCTCAGATGGAAATGCAGAAATCACCCGTCTTCTGC TGAACCCTCAGATGGAAATGCCGAAATCACCCGTCTTCTGC < 41bp 0.806858225852467 0.589990088729861 0.23456961 0.19189268 prediction 0.433736274245211 Functional Loss - RPL23AP82 ENSG00000184319 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:51195668 chr22:51195669 . . 0 22 hm5C_associated_SNPs_84176 0 0 0 1 1 RPL23AP82 chr22:51195754 5'GT 51195754 Upstream 86bp
chr19 11725413 11725413 1 + G A rs12151212 11725410 + 11725390 11725430 41 TGGGCTTTGCTGGATCCTTCCCAGAAGAATCTCTACAGGGA TGGGCTTTGCTGGATCCTTCCCAAAAGAATCTCTACAGGGA < 41bp 0.716864628674841 0.466722575137317 0.13337001 0.06784454 prediction 0.433729257349682 Functional Loss - ZNF627 ENSG00000198551 CDS Human protein_coding chr19:11725410 chr19:11725413 synonymous SNV . 0 24 hm5C_associated_SNPs_84180 0 0 0 0 2 ZNF627 chr19:11725342 3'AG 11725342 Downstream 72bp
chr19 11725413 11725413 1 + G A rs12151212 11725410 + 11725390 11725430 41 TGGGCTTTGCTGGATCCTTCCCAGAAGAATCTCTACAGGGA TGGGCTTTGCTGGATCCTTCCCAAAAGAATCTCTACAGGGA < 41bp 0.716864628674841 0.466722575137317 0.13337001 0.06784454 prediction 0.433729257349682 Functional Loss - ZNF627 ENSG00000198551 CDS Human protein_coding chr19:11725410 chr19:11725413 synonymous SNV . 0 24 hm5C_associated_SNPs_84180 0 0 0 0 2 ZNF627 chr19:11725468 5'GT 11725468 Upstream 56bp
chr19 11725414 11725414 1 + A T LUSC 11725410 + 11725390 11725430 41 TGGGCTTTGCTGGATCCTTCCCAGAAGAATCTCTACAGGGA TGGGCTTTGCTGGATCCTTCCCAGTAGAATCTCTACAGGGA < 41bp 0.716864628674841 0.387939009669358 0.13337001 0.024421096 prediction 0.433729257349682 Functional Loss - ZNF627 ENSG00000198551 CDS Human protein_coding chr19:11725410 chr19:11725414 stopgain 0.995 0 25 hm5C_associated_SNPs_84181 0 0 0 0 2 ZNF627 chr19:11725342 3'AG 11725342 Downstream 73bp
chr19 11725414 11725414 1 + A T LUSC 11725410 + 11725390 11725430 41 TGGGCTTTGCTGGATCCTTCCCAGAAGAATCTCTACAGGGA TGGGCTTTGCTGGATCCTTCCCAGTAGAATCTCTACAGGGA < 41bp 0.716864628674841 0.387939009669358 0.13337001 0.024421096 prediction 0.433729257349682 Functional Loss - ZNF627 ENSG00000198551 CDS Human protein_coding chr19:11725410 chr19:11725414 stopgain 0.995 0 25 hm5C_associated_SNPs_84181 0 0 0 0 2 ZNF627 chr19:11725468 5'GT 11725468 Upstream 55bp
chr2 128346114 128346114 1 + G A SKCM 128346111 + 128346091 128346131 41 GACCATCCGCCAGGCAAAGGCAGGAAACCATCTCTTCAAGG GACCATCCGCCAGGCAAAGGCAGAAAACCATCTCTTCAAGG < 41bp 0.779871666758517 0.563012841704361 0.90155244 0.8709215 prediction 0.433717650108311 Functional Loss - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128346111 chr2:128346114 nonsynonymous SNV 0.975 2 24 hm5C_associated_SNPs_84183 0 0 0 0 1 MYO7B chr2:128346130 5'GT 128346130 Upstream 17bp
chr3 58141733 58141733 1 + A C SKCM 58141729 + 58141709 58141749 41 GTTCAATGATGAGCACATCCCGGAAAGCCCCTACCTGGTGC GTTCAATGATGAGCACATCCCGGACAGCCCCTACCTGGTGC < 41bp 0.716858506613863 0.319957794564778 0.26057684 0.08918801 prediction 0.433717013227726 Functional Loss - FLNB ENSG00000136068 CDS Human protein_coding chr3:58141729 chr3:58141733 nonsynonymous SNV 0.666 1 25 hm5C_associated_SNPs_84184 0 0 1 0 2 FLNB chr3:58141687 3'AG 58141687 Downstream 47bp
chr3 58141733 58141733 1 + A C SKCM 58141729 + 58141709 58141749 41 GTTCAATGATGAGCACATCCCGGAAAGCCCCTACCTGGTGC GTTCAATGATGAGCACATCCCGGACAGCCCCTACCTGGTGC < 41bp 0.716858506613863 0.319957794564778 0.26057684 0.08918801 prediction 0.433717013227726 Functional Loss - FLNB ENSG00000136068 CDS Human protein_coding chr3:58141729 chr3:58141733 nonsynonymous SNV 0.666 1 25 hm5C_associated_SNPs_84184 0 0 1 0 2 FLNB chr3:58141802 5'GT 58141802 Upstream 70bp
chr7 19184566 19184566 1 + G A CESC 19184563 + 19184543 19184583 41 ACGATGGCCAGGCGGAGGGTCTCGATCCGGGACAGCCTTTT ACGATGGCCAGGCGGAGGGTCTCAATCCGGGACAGCCTTTT < 41bp 0.769895850561483 0.553042287362933 0.4239594 0.023213565 prediction 0.433707126397099 Functional Loss - FERD3L ENSG00000146618 CDS Human protein_coding chr7:19184563 chr7:19184566 synonymous SNV . 0 24 hm5C_associated_SNPs_84188 0 0 0 0 1 FERD3L chr7:19184510 3'AG 19184510 Downstream 57bp
chr17 12639564 12639564 1 + C T COAD 12639562 + 12639542 12639582 41 TGGGCTTTCTCCGGATCAGACTCGAAGTGAAGACCCCCAAA TGGGCTTTCTCCGGATCAGACTTGAAGTGAAGACCCCCAAA < 41bp 0.865926231150855 0.649074485465083 0.84291536 0.3144769 prediction 0.433703491371545 Functional Loss - MYOCD ENSG00000141052;ENSG00000273452 CDS Human other chr17:12639562 chr17:12639564 stopgain 0.991 0 23 hm5C_associated_SNPs_84189 0 0 0 0 2 MYOCD chr17:12639478 3'AG 12639478 Downstream 87bp
chr17 12639564 12639564 1 + C T COAD 12639562 + 12639542 12639582 41 TGGGCTTTCTCCGGATCAGACTCGAAGTGAAGACCCCCAAA TGGGCTTTCTCCGGATCAGACTTGAAGTGAAGACCCCCAAA < 41bp 0.865926231150855 0.649074485465083 0.84291536 0.3144769 prediction 0.433703491371545 Functional Loss - MYOCD ENSG00000141052;ENSG00000273452 CDS Human other chr17:12639562 chr17:12639564 stopgain 0.991 0 23 hm5C_associated_SNPs_84189 0 0 0 0 2 MYOCD chr17:12639653 5'GT 12639653 Upstream 90bp
chr10 134463965 134463965 1 + C T BRCA 134463963 + 134463943 134463983 41 GATGAAAGAATATAACAGGGCTCGAGTCTACCTGGATGAAA GATGAAAGAATATAACAGGGCTTGAGTCTACCTGGATGAAA < 41bp 0.716851572952682 0.417136930959813 0.09283143 0.1062288 prediction 0.433703145905365 Functional Loss - INPP5A ENSG00000068383 CDS Human protein_coding chr10:134463963 chr10:134463965 stopgain 0.957 1 23 hm5C_associated_SNPs_84191 0 0 1 0 2 INPP5A chr10:134463922 3'AG 134463922 Downstream 44bp
chr10 134463965 134463965 1 + C T BRCA 134463963 + 134463943 134463983 41 GATGAAAGAATATAACAGGGCTCGAGTCTACCTGGATGAAA GATGAAAGAATATAACAGGGCTTGAGTCTACCTGGATGAAA < 41bp 0.716851572952682 0.417136930959813 0.09283143 0.1062288 prediction 0.433703145905365 Functional Loss - INPP5A ENSG00000068383 CDS Human protein_coding chr10:134463963 chr10:134463965 stopgain 0.957 1 23 hm5C_associated_SNPs_84191 0 0 1 0 2 INPP5A chr10:134464009 5'GT 134464009 Upstream 45bp
chr10 134463966 134463966 1 + G A UCEC 134463963 + 134463943 134463983 41 GATGAAAGAATATAACAGGGCTCGAGTCTACCTGGATGAAA GATGAAAGAATATAACAGGGCTCAAGTCTACCTGGATGAAA < 41bp 0.716851572952682 0.486437844874787 0.09283143 0.054849684 prediction 0.433703145905365 Functional Loss - INPP5A ENSG00000068383 CDS Human protein_coding chr10:134463963 chr10:134463966 nonsynonymous SNV 0.958 3 24 hm5C_associated_SNPs_84192 0 0 1 0 2 INPP5A chr10:134463922 3'AG 134463922 Downstream 45bp
chr10 134463966 134463966 1 + G A UCEC 134463963 + 134463943 134463983 41 GATGAAAGAATATAACAGGGCTCGAGTCTACCTGGATGAAA GATGAAAGAATATAACAGGGCTCAAGTCTACCTGGATGAAA < 41bp 0.716851572952682 0.486437844874787 0.09283143 0.054849684 prediction 0.433703145905365 Functional Loss - INPP5A ENSG00000068383 CDS Human protein_coding chr10:134463963 chr10:134463966 nonsynonymous SNV 0.958 3 24 hm5C_associated_SNPs_84192 0 0 1 0 2 INPP5A chr10:134464009 5'GT 134464009 Upstream 44bp
chr5 175717954 175717954 1 + G A CESC 175717951 + 175717931 175717971 41 GCTAATACCGGATAAAGACACAAGAGAGGTGAGCTAACATC GCTAATACCGGATAAAGACACAAAAGAGGTGAGCTAACATC < 41bp 0.774143376304023 0.557292763276083 0.23217288 0.1004231 prediction 0.433701226055881 Functional Loss - SIMC1 ENSG00000170085 CDS Human protein_coding chr5:175717951 chr5:175717954 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_84193 0 0 0 0 1 SIMC1 chr5:175717958 5'GT 175717958 Upstream 5bp
chr9 100308621 100308621 1 + G C BLCA 100308620 + 100308600 100308640 41 TCCCCTACACAGGGGAAAAACGAGGTACTGAACAATGTTAC TCCCCTACACAGGGGAAAAACCAGGTACTGAACAATGTTAC < 41bp 0.716849693718734 0.481232830754365 0.91514957 0.89948285 prediction 0.433699387437467 Functional Loss - TMOD1 ENSG00000136842 CDS Human protein_coding chr9:100308620 chr9:100308621 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_84195 0 0 1 0 1 TMOD1 chr9:100308623 5'GT 100308623 Upstream 3bp
chr12 52370317 52370317 1 + C T SKCM 52370314 + 52370294 52370334 41 GTCTCTCCAAAGACAAGACGCTCCAGGATCTTGTCTACGAT GTCTCTCCAAAGACAAGACGCTCTAGGATCTTGTCTACGAT < 41bp 0.71684952731791 0.478055027072929 0.5177388 0.28307045 prediction 0.433699054635819 Functional Loss - ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52370314 chr12:52370317 stopgain 0.998 1 24 hm5C_associated_SNPs_84196 0 0 0 0 1 ACVR1B chr12:52370359 5'GT 52370359 Upstream 43bp
chr1 117561104 117561104 1 + A C LUAD 117561103 + 117561083 117561123 41 TGTGAAGTAGAAGTTTATGACAGAAATTCCCTATACAACAA TGTGAAGTAGAAGTTTATGACCGAAATTCCCTATACAACAA < 41bp 0.838044181637646 0.621195068322008 0.07412413 0.020896912 prediction 0.433698226631275 Functional Loss - CD101 ENSG00000134256 CDS Human protein_coding chr1:117561103 chr1:117561104 synonymous SNV . 0 22 hm5C_associated_SNPs_84197 0 0 0 0 1 CD101 chr1:117561182 5'GT 117561182 Upstream 79bp
chr5 34807938 34807938 1 + G T LIHC 34807936 + 34807916 34807956 41 AGCCGAAAGTGTCGACAGCTCTGGGAAAACAGCTTTACATT AGCCGAAAGTGTCGACAGCTCTTGGAAAACAGCTTTACATT < 41bp 0.716847083041837 0.374973304055011 0.8327228 0.27695107 prediction 0.433694166083673 Functional Loss - RAI14 ENSG00000039560 CDS Human protein_coding chr5:34807936 chr5:34807938 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_84198 0 0 1 0 2 RAI14 chr5:34807905 3'AG 34807905 Downstream 34bp
chr5 34807938 34807938 1 + G T LIHC 34807936 + 34807916 34807956 41 AGCCGAAAGTGTCGACAGCTCTGGGAAAACAGCTTTACATT AGCCGAAAGTGTCGACAGCTCTTGGAAAACAGCTTTACATT < 41bp 0.716847083041837 0.374973304055011 0.8327228 0.27695107 prediction 0.433694166083673 Functional Loss - RAI14 ENSG00000039560 CDS Human protein_coding chr5:34807936 chr5:34807938 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_84198 0 0 1 0 2 RAI14 chr5:34807962 5'GT 34807962 Upstream 25bp
chr16 84228999 84228999 1 - C T UCEC 84229002 - 84228982 84229022 41 CCATGGCAGTCGTGGAGCTGCTGGCCCGAGAACTCCAGCCA CCATGGCAGTCGTGGAGCTGCTGACCCGAGAACTCCAGCCA < 41bp 0.804296819171435 0.58745836501768 0.37266073 0.2651055 prediction 0.433676908307511 Functional Loss - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84229002 chr16:84228999 synonymous SNV . 0 24 hm5C_associated_SNPs_84200 0 0 0 0 1 ADAD2 chr16:84229047 3'AG 84229047 Downstream 49bp
chr5 170725847 170725847 1 + C T COAD 170725845 + 170725825 170725865 41 GCAACACTGAACCATGCAGTCTCGACATGATGAGCTGACCC GCAACACTGAACCATGCAGTCTTGACATGATGAGCTGACCC < 41bp 0.716837342578365 0.444293007321698 0.6681769 0.18693665 prediction 0.43367468515673 Functional Loss - RANBP17 ENSG00000204764 CDS Human protein_coding chr5:170725845 chr5:170725847 synonymous SNV . 0 23 hm5C_associated_SNPs_84201 0 0 0 0 1 RANBP17 chr5:170725766 3'AG 170725766 Downstream 82bp
chr19 36351449 36351449 1 + G A rs374835389 36351446 + 36351426 36351466 41 CAAAAGGGGGCTCTCCGGTGCTCGGGGCCCGCGGGCCAAGG CAAAAGGGGGCTCTCCGGTGCTCAGGGCCCGCGGGCCAAGG < 41bp 0.716827639131825 0.462461743691783 0.47656977 0.43142024 prediction 0.43365527826365 Functional Loss - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36351446 chr19:36351449 nonsynonymous SNV 0.979 4 24 hm5C_associated_SNPs_84207 0 0 0 0 1 KIRREL2 chr19:36351421 3'AG 36351421 Downstream 29bp
chr2 27729358 27729358 1 + G A SKCM 27729355 + 27729335 27729375 41 GCTTTTCTCCCAGATGCCTCCTGGAAATCTTGCGGACATTT GCTTTTCTCCCAGATGCCTCCTGAAAATCTTGCGGACATTT < 41bp 0.784733236980477 0.567908614915178 0.40179098 0.27237087 prediction 0.433649244130598 Functional Loss - GCKR ENSG00000084734 CDS Human protein_coding chr2:27729355 chr2:27729358 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_84210 0 0 1 0 2 GCKR chr2:27729348 3'AG 27729348 Downstream 11bp
chr2 27729358 27729358 1 + G A SKCM 27729355 + 27729335 27729375 41 GCTTTTCTCCCAGATGCCTCCTGGAAATCTTGCGGACATTT GCTTTTCTCCCAGATGCCTCCTGAAAATCTTGCGGACATTT < 41bp 0.784733236980477 0.567908614915178 0.40179098 0.27237087 prediction 0.433649244130598 Functional Loss - GCKR ENSG00000084734 CDS Human protein_coding chr2:27729355 chr2:27729358 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_84210 0 0 1 0 2 GCKR chr2:27729446 5'GT 27729446 Upstream 89bp
chr6 108492735 108492735 1 + C T COAD 108492732 + 108492712 108492752 41 AAGCACTACGGGGTCTACGCCTGCGACGGCTGCTCAGGTTT AAGCACTACGGGGTCTACGCCTGTGACGGCTGCTCAGGTTT < 41bp 0.727189034394992 0.510365597499288 0.15169528 0.15292317 prediction 0.433646873791408 Functional Loss - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108492732 chr6:108492735 synonymous SNV . 0 24 hm5C_associated_SNPs_84211 0 0 0 0 2 NR2E1 chr6:108492662 3'AG 108492662 Downstream 74bp
chr6 108492735 108492735 1 + C T COAD 108492732 + 108492712 108492752 41 AAGCACTACGGGGTCTACGCCTGCGACGGCTGCTCAGGTTT AAGCACTACGGGGTCTACGCCTGTGACGGCTGCTCAGGTTT < 41bp 0.727189034394992 0.510365597499288 0.15169528 0.15292317 prediction 0.433646873791408 Functional Loss - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108492732 chr6:108492735 synonymous SNV . 0 24 hm5C_associated_SNPs_84211 0 0 0 0 2 NR2E1 chr6:108492807 5'GT 108492807 Upstream 73bp
chr16 67237459 67237459 1 + C T UCEC 67237457 + 67237437 67237477 41 GTGGGGAGGAGGAAGCGTACCTCAACTTCATTGCCCCCTCC GTGGGGAGGAGGAAGCGTACCTTAACTTCATTGCCCCCTCC < 41bp 0.855467560759084 0.638644887892639 0.8486176 0.50553083 prediction 0.433645345732889 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67237457 chr16:67237459 synonymous SNV . 0 23 hm5C_associated_SNPs_84212 0 0 1 0 2 ELMO3 chr16:67237400 3'AG 67237400 Downstream 60bp
chr16 67237459 67237459 1 + C T UCEC 67237457 + 67237437 67237477 41 GTGGGGAGGAGGAAGCGTACCTCAACTTCATTGCCCCCTCC GTGGGGAGGAGGAAGCGTACCTTAACTTCATTGCCCCCTCC < 41bp 0.855467560759084 0.638644887892639 0.8486176 0.50553083 prediction 0.433645345732889 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67237457 chr16:67237459 synonymous SNV . 0 23 hm5C_associated_SNPs_84212 0 0 1 0 2 ELMO3 chr16:67237486 5'GT 67237486 Upstream 28bp
chr19 50212046 50212046 1 + G A SKCM 50212043 + 50212023 50212063 41 ACGGCCACTGCAAGGGGCACCCGGACCCCACACTACCCCAG ACGGCCACTGCAAGGGGCACCCGAACCCCACACTACCCCAG < 41bp 0.716821150115785 0.469978378809955 0.26856768 0.1532 prediction 0.433642300231571 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50212043 chr19:50212046 nonsynonymous SNV 0.005 2 24 hm5C_associated_SNPs_84215 0 0 0 0 2 CPT1C chr19:50211980 3'AG 50211980 Downstream 67bp
chr19 50212046 50212046 1 + G A SKCM 50212043 + 50212023 50212063 41 ACGGCCACTGCAAGGGGCACCCGGACCCCACACTACCCCAG ACGGCCACTGCAAGGGGCACCCGAACCCCACACTACCCCAG < 41bp 0.716821150115785 0.469978378809955 0.26856768 0.1532 prediction 0.433642300231571 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50212043 chr19:50212046 nonsynonymous SNV 0.005 2 24 hm5C_associated_SNPs_84215 0 0 0 0 2 CPT1C chr19:50212096 5'GT 50212096 Upstream 51bp
chr12 121432032 121432032 1 + C T CESC 121432030 + 121432010 121432050 41 GGGCTGGGCTCCAACCTCGTCACGGAGGTGCGTGTCTACAA GGGCTGGGCTCCAACCTCGTCATGGAGGTGCGTGTCTACAA < 41bp 0.832525340680301 0.615709012052885 0.19036704 0.28618023 prediction 0.433632657254831 Functional Loss - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121432030 chr12:121432032 nonsynonymous SNV 0.986 5 23 hm5C_associated_SNPs_84217 1 0 1 0 1 HNF1A chr12:121431967 3'AG 121431967 Downstream 66bp
chr16 31226446 31226446 1 + C T BLCA 31226444 + 31226424 31226464 41 CCGCCGAGGCCCACGCACGCCTCAAGGTGCGGGATCCGCGC CCGCCGAGGCCCACGCACGCCTTAAGGTGCGGGATCCGCGC < 41bp 0.830275946016027 0.613460017897171 0.25682503 0.16656834 prediction 0.433631856237714 Functional Loss - TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31226444 chr16:31226446 synonymous SNV . 0 23 hm5C_associated_SNPs_84219 0 0 0 0 1 TRIM72 chr16:31226449 5'GT 31226449 Upstream 4bp
chr3 140851072 140851072 1 + C T rs543548775 140851070 + 140851050 140851090 41 CCCTGGCCAAAGTGCAGTGGCACGATCTCGGCTCACTGCAA CCCTGGCCAAAGTGCAGTGGCATGATCTCGGCTCACTGCAA < 41bp 0.716809340232218 0.464136575493013 0.42610982 0.5448826 prediction 0.433618680464437 Functional Loss - SPSB4 ENSG00000175093 CDS Human protein_coding chr3:140851070 chr3:140851072 unknown . 0 23 hm5C_associated_SNPs_84221 0 0 0 0 2 SPSB4 chr3:140851031 3'AG 140851031 Downstream 42bp
chr3 140851072 140851072 1 + C T rs543548775 140851070 + 140851050 140851090 41 CCCTGGCCAAAGTGCAGTGGCACGATCTCGGCTCACTGCAA CCCTGGCCAAAGTGCAGTGGCATGATCTCGGCTCACTGCAA < 41bp 0.716809340232218 0.464136575493013 0.42610982 0.5448826 prediction 0.433618680464437 Functional Loss - SPSB4 ENSG00000175093 CDS Human protein_coding chr3:140851070 chr3:140851072 unknown . 0 23 hm5C_associated_SNPs_84221 0 0 0 0 2 SPSB4 chr3:140851152 5'GT 140851152 Upstream 81bp
chr3 140851073 140851073 1 + G A rs140090822 140851070 + 140851050 140851090 41 CCCTGGCCAAAGTGCAGTGGCACGATCTCGGCTCACTGCAA CCCTGGCCAAAGTGCAGTGGCACAATCTCGGCTCACTGCAA < 41bp 0.716809340232218 0.469578143361769 0.42610982 0.4894709 prediction 0.433618680464437 Functional Loss - SPSB4 ENSG00000175093 CDS Human protein_coding chr3:140851070 chr3:140851073 unknown . 0 24 hm5C_associated_SNPs_84222 0 0 0 0 2 SPSB4 chr3:140851031 3'AG 140851031 Downstream 43bp
chr3 140851073 140851073 1 + G A rs140090822 140851070 + 140851050 140851090 41 CCCTGGCCAAAGTGCAGTGGCACGATCTCGGCTCACTGCAA CCCTGGCCAAAGTGCAGTGGCACAATCTCGGCTCACTGCAA < 41bp 0.716809340232218 0.469578143361769 0.42610982 0.4894709 prediction 0.433618680464437 Functional Loss - SPSB4 ENSG00000175093 CDS Human protein_coding chr3:140851070 chr3:140851073 unknown . 0 24 hm5C_associated_SNPs_84222 0 0 0 0 2 SPSB4 chr3:140851152 5'GT 140851152 Upstream 80bp
chr2 71591155 71591155 1 + G A BLCA 71591152 + 71591132 71591172 41 TTCCCCCAGTCCTAGGCGTTCTAGAAGATCAAGCTCAAGTC TTCCCCCAGTCCTAGGCGTTCTAAAAGATCAAGCTCAAGTC < 41bp 0.758018484276818 0.541213911580847 0.29361778 0.2566576 prediction 0.433609145391942 Functional Loss - ZNF638 ENSG00000075292 CDS Human protein_coding chr2:71591152 chr2:71591155 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_84226 0 0 1 0 1 ZNF638 chr2:71591084 3'AG 71591084 Downstream 72bp
chr12 81528636 81528636 1 + G T UCEC 81528633 + 81528613 81528653 41 GTCTTGGTCAAGCATGGCATCAAGAAAGGTGACACTGTGGT GTCTTGGTCAAGCATGGCATCAATAAAGGTGACACTGTGGT < 41bp 0.716802862667014 0.324870213770726 0.7173787 0.21948054 prediction 0.433605725334029 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81528633 chr12:81528636 nonsynonymous SNV 0.975 0 24 hm5C_associated_SNPs_84227 0 0 1 0 1 ACSS3 chr12:81528595 3'AG 81528595 Downstream 42bp
chr19 48342668 48342668 1 + G T LUSC 48342665 + 48342645 48342685 41 CCCAGGGGGCCAGGCCAAGGCCCGGCCTGCCAAGAGGAAGG CCCAGGGGGCCAGGCCAAGGCCCTGCCTGCCAAGAGGAAGG < 41bp 0.716802136745931 0.306790864150181 0.10520601 0.06934041 prediction 0.433604273491863 Functional Loss - CRX ENSG00000105392 CDS Human protein_coding chr19:48342665 chr19:48342668 nonsynonymous SNV 0.761 3 24 hm5C_associated_SNPs_84228 0 0 0 0 1 CRX chr19:48342577 3'AG 48342577 Downstream 92bp
chr8 104342270 104342270 1 + T C ESCA 104342269 + 104342249 104342289 41 GGGCCAGGCAGGCAGTGTATCTGAAAGTGCGCGGAGTGAAG GGGCCAGGCAGGCAGTGTATCCGAAAGTGCGCGGAGTGAAG < 41bp 0.79904915828627 0.582251171547407 0.11904788 0.17894375 prediction 0.433595973477725 Functional Loss - FZD6 ENSG00000164930 CDS Human protein_coding chr8:104342269 chr8:104342270 synonymous SNV . 0 22 hm5C_associated_SNPs_84231 0 0 1 0 1 FZD6 chr8:104342293 5'GT 104342293 Upstream 24bp
chr3 56627979 56627979 1 + C T SKCM 56627976 + 56627956 56627996 41 GTATGTATCTTGCCAGCTTTCTCCGTTCTATGACTGCTCTC GTATGTATCTTGCCAGCTTTCTCTGTTCTATGACTGCTCTC < 41bp 0.720531581639518 0.503733925380686 0.34931746 0.15593097 prediction 0.433595312517664 Functional Loss - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56627976 chr3:56627979 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_84232 0 0 1 6 2 CCDC66 chr3:56627972 3'AG 56627972 Downstream 8bp
chr3 56627979 56627979 1 + C T SKCM 56627976 + 56627956 56627996 41 GTATGTATCTTGCCAGCTTTCTCCGTTCTATGACTGCTCTC GTATGTATCTTGCCAGCTTTCTCTGTTCTATGACTGCTCTC < 41bp 0.720531581639518 0.503733925380686 0.34931746 0.15593097 prediction 0.433595312517664 Functional Loss - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56627976 chr3:56627979 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_84232 0 0 1 6 2 CCDC66 chr3:56628056 5'GT 56628056 Upstream 78bp
chr5 5190105 5190105 1 + C T LUAD 5190102 + 5190082 5190122 41 AGCCAGGACTGGTGATAAGTCACCACGCAGACCACACCTTA AGCCAGGACTGGTGATAAGTCACTACGCAGACCACACCTTA < 41bp 0.741948568172923 0.525157613554859 0.23779473 0.20156223 prediction 0.433581909236128 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5190102 chr5:5190105 nonsynonymous SNV 0.468 5 24 hm5C_associated_SNPs_84236 0 0 0 0 1 ADAMTS16 chr5:5190084 3'AG 5190084 Downstream 22bp
chr3 119204213 119204213 1 + C T rs549455603 119204210 + 119204190 119204230 41 GCCATGGAAAAAGAAAAACTCTACAGCATATTTCCGAGGAT GCCATGGAAAAAGAAAAACTCTATAGCATATTTCCGAGGAT < 41bp 0.716787151301017 0.488000330002058 0.7246877 0.28234726 prediction 0.433574302602035 Functional Loss - POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119204210 chr3:119204213 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_84238 0 0 0 0 2 POGLUT1 chr3:119204175 3'AG 119204175 Downstream 39bp
chr3 119204213 119204213 1 + C T rs549455603 119204210 + 119204190 119204230 41 GCCATGGAAAAAGAAAAACTCTACAGCATATTTCCGAGGAT GCCATGGAAAAAGAAAAACTCTATAGCATATTTCCGAGGAT < 41bp 0.716787151301017 0.488000330002058 0.7246877 0.28234726 prediction 0.433574302602035 Functional Loss - POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119204210 chr3:119204213 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_84238 0 0 0 0 2 POGLUT1 chr3:119204234 5'GT 119204234 Upstream 22bp
chr6 7590603 7590603 1 + G T rs551596030 7590601 + 7590581 7590621 41 GAGGTGACCGCGTCCCTGGGCTGGGACCTAGATAGTCTGGA GAGGTGACCGCGTCCCTGGGCTTGGACCTAGATAGTCTGGA < 41bp 0.716786826290877 0.364627909730946 0.27810338 0.21337467 prediction 0.433573652581754 Functional Loss - SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7590601 chr6:7590603 nonsynonymous SNV 0.991 3 23 hm5C_associated_SNPs_84239 0 0 1 0 1 SNRNP48 chr6:7590646 5'GT 7590646 Upstream 44bp
chr2 95713761 95713761 1 + G A UCEC 95713758 + 95713738 95713778 41 CCTCCCTGGTGCCCTGGCCCCTGGTCCAGGGCTGGGTGATG CCTCCCTGGTGCCCTGGCCCCTGATCCAGGGCTGGGTGATG < 41bp 0.803153257624983 0.586369031229487 0.35146615 0.27087748 prediction 0.433568452790993 Functional Loss - MAL ENSG00000172005 CDS Human protein_coding chr2:95713758 chr2:95713761 nonsynonymous SNV 0.527 0 24 hm5C_associated_SNPs_84241 0 0 0 0 1 MAL chr2:95713704 3'AG 95713704 Downstream 58bp
chr7 2566028 2566028 1 + G A rs12700028 2566025 + 2566005 2566045 41 AACCTGCAGCAGGTGCCCACCTCGGAGCTCCACGAGCAGGT AACCTGCAGCAGGTGCCCACCTCAGAGCTCCACGAGCAGGT < 41bp 0.794776452306367 0.577994244878322 0.7789459 0.3479824 prediction 0.43356441485609 Functional Loss - LFNG ENSG00000106003 CDS Human protein_coding chr7:2566025 chr7:2566028 synonymous SNV . 0 24 hm5C_associated_SNPs_84245 1 0 0 0 1 LFNG chr7:2566043 5'GT 2566043 Upstream 16bp
chr16 55523591 55523591 1 + A T ESCA 55523587 + 55523567 55523607 41 GTCCACTGTTGGTGGGAACTCAGAAGGTGCCCCCTGTGTCT GTCCACTGTTGGTGGGAACTCAGATGGTGCCCCCTGTGTCT < 41bp 0.892542657896962 0.675762937542156 0.8965584 0.88766 prediction 0.433559440709611 Functional Loss - MMP2 ENSG00000087245 CDS Human protein_coding chr16:55523587 chr16:55523591 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_84246 0 0 0 0 1 MMP2 chr16:55523563 3'AG 55523563 Downstream 29bp
chr14 69805441 69805441 1 + C T HNSC 69805438 + 69805418 69805458 41 TGCAGCCGGGTGGGCCATGTCTTCAGGAAACGGCACCCCTA TGCAGCCGGGTGGGCCATGTCTTTAGGAAACGGCACCCCTA < 41bp 0.758295199999606 0.541516338246796 0.21553162 0.3551796 prediction 0.433557723505621 Functional Loss - GALNT16 ENSG00000100626 CDS Human protein_coding chr14:69805438 chr14:69805441 synonymous SNV . 0 24 hm5C_associated_SNPs_84247 0 0 0 0 2 GALNT16 chr14:69805368 3'AG 69805368 Downstream 74bp
chr14 69805441 69805441 1 + C T HNSC 69805438 + 69805418 69805458 41 TGCAGCCGGGTGGGCCATGTCTTCAGGAAACGGCACCCCTA TGCAGCCGGGTGGGCCATGTCTTTAGGAAACGGCACCCCTA < 41bp 0.758295199999606 0.541516338246796 0.21553162 0.3551796 prediction 0.433557723505621 Functional Loss - GALNT16 ENSG00000100626 CDS Human protein_coding chr14:69805438 chr14:69805441 synonymous SNV . 0 24 hm5C_associated_SNPs_84247 0 0 0 0 2 GALNT16 chr14:69805494 5'GT 69805494 Upstream 54bp
chr16 68862142 68862142 1 + C T SKCM 68862140 + 68862120 68862160 41 GGTCAAAGAGCCCTTACTGCCCCCAGAGGATGACACCCGGG GGTCAAAGAGCCCTTACTGCCCTCAGAGGATGACACCCGGG < 41bp 0.716777322863513 0.418859078102832 0.09201735 0.095478445 prediction 0.433554645727027 Functional Loss - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68862140 chr16:68862142 nonsynonymous SNV 0.993 3 23 hm5C_associated_SNPs_84249 0 0 1 0 2 CDH1 chr16:68862077 3'AG 68862077 Downstream 66bp
chr16 68862142 68862142 1 + C T SKCM 68862140 + 68862120 68862160 41 GGTCAAAGAGCCCTTACTGCCCCCAGAGGATGACACCCGGG GGTCAAAGAGCCCTTACTGCCCTCAGAGGATGACACCCGGG < 41bp 0.716777322863513 0.418859078102832 0.09201735 0.095478445 prediction 0.433554645727027 Functional Loss - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68862140 chr16:68862142 nonsynonymous SNV 0.993 3 23 hm5C_associated_SNPs_84249 0 0 1 0 2 CDH1 chr16:68862207 5'GT 68862207 Upstream 66bp
chr20 33834701 33834701 1 + A T HNSC 33834697 + 33834677 33834717 41 ATGACTCACGGGCATCTGCGCTGCACTCAGCGAAGGCCTTG ATGACTCACGGGCATCTGCGCTGCTCTCAGCGAAGGCCTTG < 41bp 0.716777273704876 0.373924652927552 0.10606706 0.056437433 prediction 0.433554547409753 Functional Loss - MMP24 ENSG00000125966 CDS Human protein_coding chr20:33834697 chr20:33834701 nonsynonymous SNV 0.969 1 25 hm5C_associated_SNPs_84250 0 0 0 0 2 MMP24 chr20:33834643 3'AG 33834643 Downstream 59bp
chr20 33834701 33834701 1 + A T HNSC 33834697 + 33834677 33834717 41 ATGACTCACGGGCATCTGCGCTGCACTCAGCGAAGGCCTTG ATGACTCACGGGCATCTGCGCTGCTCTCAGCGAAGGCCTTG < 41bp 0.716777273704876 0.373924652927552 0.10606706 0.056437433 prediction 0.433554547409753 Functional Loss - MMP24 ENSG00000125966 CDS Human protein_coding chr20:33834697 chr20:33834701 nonsynonymous SNV 0.969 1 25 hm5C_associated_SNPs_84250 0 0 0 0 2 MMP24 chr20:33834791 5'GT 33834791 Upstream 91bp
chr9 99250498 99250498 1 + G T UCEC 99250495 + 99250475 99250515 41 GCGTGGAGCCAGAGGAGGCACCCGGGGAGGCCGGGGAAGGA GCGTGGAGCCAGAGGAGGCACCCTGGGAGGCCGGGGAAGGA < 41bp 0.716772390877271 0.313853425219593 0.85585314 0.575741 prediction 0.433544781754541 Functional Loss - HABP4 ENSG00000130956 CDS Human protein_coding chr9:99250495 chr9:99250498 nonsynonymous SNV 0.740 3 24 hm5C_associated_SNPs_84254 0 0 0 0 1 HABP4 chr9:99250556 5'GT 99250556 Upstream 59bp
chr3 50231061 50231061 1 + C T COAD 50231059 + 50231039 50231079 41 GTATCCAGGCCTGTTTTGAGCGCGCCTCGGAGTACCAGCTC GTATCCAGGCCTGTTTTGAGCGTGCCTCGGAGTACCAGCTC < 41bp 0.829404659877713 0.612639099000164 0.11685744 0.09242785 prediction 0.433531121755098 Functional Loss - GNAT1 ENSG00000114349 CDS Human protein_coding chr3:50231059 chr3:50231061 synonymous SNV . 0 23 hm5C_associated_SNPs_84256 0 0 0 0 1 GNAT1 chr3:50231096 5'GT 50231096 Upstream 36bp
chr4 8475361 8475361 1 + G C rs143104422 8475357 + 8475337 8475377 41 CCTGTGCTGAGGTAGAGTCCCAGGGGATGCGCACGGTAAGG CCTGTGCTGAGGTAGAGTCCCAGGCGATGCGCACGGTAAGG < 41bp 0.716765137969235 0.420472869631658 0.8952045 0.85476923 prediction 0.43353027593847 Functional Loss - TRMT44 ENSG00000155275 intronic Human protein_coding chr4:8475357 chr4:8475361 . . 0 25 hm5C_associated_SNPs_84257 0 0 1 0 1 TRMT44 chr4:8475371 5'GT 8475371 Upstream 11bp
chr20 4155753 4155753 1 + C T STAD 4155751 + 4155731 4155771 41 GTGCGGATGACCCTCTCAGTCGCGGCCTACGGAGAAGGGGA GTGCGGATGACCCTCTCAGTCGTGGCCTACGGAGAAGGGGA < 41bp 0.837733210785328 0.620968841294815 0.17381123 0.75853777 prediction 0.433528738981026 Functional Loss - SMOX ENSG00000088826 CDS Human protein_coding chr20:4155751 chr20:4155753 synonymous SNV . 0 23 hm5C_associated_SNPs_84258 0 0 0 0 1 SMOX chr20:4155677 3'AG 4155677 Downstream 77bp
chr1 223943271 223943271 1 + G A STAD 223943268 + 223943248 223943288 41 GGGAGAGCGGCTGCACCTTCCTGGTGGGGCTCATTCAGAAG GGGAGAGCGGCTGCACCTTCCTGATGGGGCTCATTCAGAAG < 41bp 0.793402391509052 0.576639145359588 0.26371264 0.0899179 prediction 0.433526492298927 Functional Loss - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943268 chr1:223943271 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_84259 0 0 1 0 2 CAPN2 chr1:223943182 3'AG 223943182 Downstream 90bp
chr1 223943271 223943271 1 + G A STAD 223943268 + 223943248 223943288 41 GGGAGAGCGGCTGCACCTTCCTGGTGGGGCTCATTCAGAAG GGGAGAGCGGCTGCACCTTCCTGATGGGGCTCATTCAGAAG < 41bp 0.793402391509052 0.576639145359588 0.26371264 0.0899179 prediction 0.433526492298927 Functional Loss - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943268 chr1:223943271 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_84259 0 0 1 0 2 CAPN2 chr1:223943351 5'GT 223943351 Upstream 81bp
chr1 156035750 156035750 1 + G A COAD 156035747 + 156035727 156035767 41 GGGGAAGACCAATCTACTCTCCCGATTCACGCGCAATGAGT GGGGAAGACCAATCTACTCTCCCAATTCACGCGCAATGAGT < 41bp 0.793507349911641 0.576746937000095 0.10433298 0.08398175 prediction 0.433520825823093 Functional Loss - RAB25 ENSG00000132698 CDS Human protein_coding chr1:156035747 chr1:156035750 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_84260 0 0 0 0 1 RAB25 chr1:156035702 3'AG 156035702 Downstream 49bp
chr1 200878016 200878016 1 + G A BLCA 200878013 + 200877993 200878033 41 GCCCCTGGAAGGAAACCAGCCTGGACCACCCCTATGAGAAG GCCCCTGGAAGGAAACCAGCCTGAACCACCCCTATGAGAAG < 41bp 0.795644907288142 0.578884984872033 0.009116083 0.020450383 prediction 0.433519844832217 Functional Loss - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200878013 chr1:200878016 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_84261 0 0 0 0 1 C1orf106 chr1:200878068 5'GT 200878068 Upstream 53bp
chr19 48965635 48965635 1 + C T COAD 48965633 + 48965613 48965653 41 ACCGCCTCTGCCTCATGTGGCGCGTCGGCAACCTGCGCCGC ACCGCCTCTGCCTCATGTGGCGTGTCGGCAACCTGCGCCGC < 41bp 0.716756130105217 0.483009378850919 0.20867467 0.20055011 prediction 0.433512260210435 Functional Loss - KCNJ14 ENSG00000182324 CDS Human protein_coding chr19:48965633 chr19:48965635 synonymous SNV . 0 23 hm5C_associated_SNPs_84263 0 0 1 0 1 KCNJ14 chr19:48965695 5'GT 48965695 Upstream 61bp
chr1 158064133 158064133 1 + G A CESC 158064130 + 158064110 158064150 41 AGGATGATGTGGATCTGAAGCAGGACCTGCGCTGCGACACC AGGATGATGTGGATCTGAAGCAGAACCTGCGCTGCGACACC < 41bp 0.8085830346655 0.591829520591239 0.5702786 0.20190129 prediction 0.433507028148522 Functional Loss - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158064130 chr1:158064133 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_84265 0 0 0 0 2 KIRREL chr1:158064103 3'AG 158064103 Downstream 31bp
chr1 158064133 158064133 1 + G A CESC 158064130 + 158064110 158064150 41 AGGATGATGTGGATCTGAAGCAGGACCTGCGCTGCGACACC AGGATGATGTGGATCTGAAGCAGAACCTGCGCTGCGACACC < 41bp 0.8085830346655 0.591829520591239 0.5702786 0.20190129 prediction 0.433507028148522 Functional Loss - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158064130 chr1:158064133 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_84265 0 0 0 0 2 KIRREL chr1:158064180 5'GT 158064180 Upstream 48bp
chr13 76179901 76179901 1 + G A COAD 76179898 + 76179878 76179918 41 TTTGCAAGAAGTTTATGGAGCGCGACCCTGATGAACTAAGA TTTGCAAGAAGTTTATGGAGCGCAACCCTGATGAACTAAGA < 41bp 0.735320261976146 0.518566908381088 0.02727285 0.028066188 prediction 0.433506707190115 Functional Loss - UCHL3 ENSG00000118939 CDS Human protein_coding chr13:76179898 chr13:76179901 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_84266 0 0 1 0 1 UCHL3 chr13:76179865 3'AG 76179865 Downstream 37bp
chr4 52960700 52960700 1 + G A PRAD 52960697 + 52960677 52960717 41 CTTTTATATTTTCCAGATGTCTCGAAGTCGGAGTCCTTCTC CTTTTATATTTTCCAGATGTCTCAAAGTCGGAGTCCTTCTC < 41bp 0.749505137818375 0.532752194563963 0.83283246 0.14537814 prediction 0.433505886508824 Functional Loss - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52960697 chr4:52960700 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_84268 0 0 1 0 1 SPATA18 chr4:52960693 3'AG 52960693 Downstream 8bp
chr20 43246999 43246999 1 + G A HNSC 43246996 + 43246976 43247016 41 CAGAGCAGCGATGGGACCACCTCGTCTTGAATCTGACCTTG CAGAGCAGCGATGGGACCACCTCATCTTGAATCTGACCTTG < 41bp 0.71674727947096 0.48295566674328 0.15440357 0.2961362 prediction 0.433494558941919 Functional Loss - PKIG ENSG00000168734 CDS Human protein_coding chr20:43246996 chr20:43246999 synonymous SNV . 0 24 hm5C_associated_SNPs_84270 0 0 1 0 1 PKIG chr20:43246926 3'AG 43246926 Downstream 74bp
chr8 120435102 120435102 1 + G T UCEC 120435099 + 120435079 120435119 41 GGAAAAAAGTGTCTCCGCACCAAGAAGTCACTCAAAGCCAT GGAAAAAAGTGTCTCCGCACCAATAAGTCACTCAAAGCCAT < 41bp 0.716737117658866 0.341713775292017 0.1357106 0.07700911 prediction 0.433474235317733 Functional Loss - NOV ENSG00000136999 CDS Human protein_coding chr8:120435099 chr8:120435102 nonsynonymous SNV 0.618 1 24 hm5C_associated_SNPs_84275 0 0 1 0 1 NOV chr8:120435076 3'AG 120435076 Downstream 27bp
chr1 160104970 160104970 1 + T C COAD 160104969 + 160104949 160104989 41 GCGTGGTGCACGGCTCTGACCTGAAGGACATGACATCGGAG GCGTGGTGCACGGCTCTGACCCGAAGGACATGACATCGGAG < 41bp 0.716736107923986 0.456319429964019 0.18237987 0.31311935 prediction 0.433472215847972 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160104969 chr1:160104970 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_84276 0 0 0 0 1 ATP1A2 chr1:160104935 3'AG 160104935 Downstream 36bp
chr16 89790026 89790026 1 + G A COAD 89790023 + 89790003 89790043 41 GAGACCAAGACCCTGCCCAGCACGGATGTGGCCCAGCCTCC GAGACCAAGACCCTGCCCAGCACAGATGTGGCCCAGCCTCC < 41bp 0.791202966973117 0.574467114842872 0.4298677 0.39036316 prediction 0.433471704260491 Functional Loss - ZNF276 ENSG00000158805 CDS Human protein_coding chr16:89790023 chr16:89790026 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_84277 0 0 1 0 1 ZNF276 chr16:89790117 5'GT 89790117 Upstream 92bp
chr1 11842299 11842299 1 + G A COAD 11842296 + 11842276 11842316 41 CATGGGTGCAGGTCCACCTCCAGGGCCTGCAGAAGGTGGTG CATGGGTGCAGGTCCACCTCCAGAGCCTGCAGAAGGTGGTG < 41bp 0.810943829849972 0.594208821607523 0.895597 0.8367501 prediction 0.433470016484898 Functional Loss - C1orf167 ENSG00000215910 CDS Human protein_coding chr1:11842296 chr1:11842299 nonsynonymous SNV 0.008 1 24 hm5C_associated_SNPs_84278 0 0 0 0 3 C1orf167 chr1:11842246 3'AG 11842246 Downstream 54bp
chr1 11842299 11842299 1 + G A COAD 11842296 + 11842276 11842316 41 CATGGGTGCAGGTCCACCTCCAGGGCCTGCAGAAGGTGGTG CATGGGTGCAGGTCCACCTCCAGAGCCTGCAGAAGGTGGTG < 41bp 0.810943829849972 0.594208821607523 0.895597 0.8367501 prediction 0.433470016484898 Functional Loss - C1orf167 ENSG00000215910 CDS Human protein_coding chr1:11842296 chr1:11842299 nonsynonymous SNV 0.008 1 24 hm5C_associated_SNPs_84278 0 0 0 0 3 C1orf167 chr1:11842251 3'AG 11842251 Downstream 49bp
chr1 11842299 11842299 1 + G A COAD 11842296 + 11842276 11842316 41 CATGGGTGCAGGTCCACCTCCAGGGCCTGCAGAAGGTGGTG CATGGGTGCAGGTCCACCTCCAGAGCCTGCAGAAGGTGGTG < 41bp 0.810943829849972 0.594208821607523 0.895597 0.8367501 prediction 0.433470016484898 Functional Loss - C1orf167 ENSG00000215910 CDS Human protein_coding chr1:11842296 chr1:11842299 nonsynonymous SNV 0.008 1 24 hm5C_associated_SNPs_84278 0 0 0 0 3 C1orf167 chr1:11842390 5'GT 11842390 Upstream 92bp
chr1 47515726 47515726 1 + G A SKCM 47515723 + 47515703 47515743 41 GAGTTAAAGGTAACCATTGCCTTGATTCTGCTCCACTTCAG GAGTTAAAGGTAACCATTGCCTTAATTCTGCTCCACTTCAG < 41bp 0.754739063073881 0.538005271206983 0.63312316 0.39549267 prediction 0.433467583733797 Functional Loss - CYP4X1 ENSG00000186377 CDS Human protein_coding chr1:47515723 chr1:47515726 synonymous SNV . 0 24 hm5C_associated_SNPs_84281 0 0 1 0 1 CYP4X1 chr1:47515672 3'AG 47515672 Downstream 55bp
chr11 68700827 68700827 1 + G A UCEC 68700824 + 68700804 68700844 41 CGCCTGGCTGAGGAGTACGGCGCGAGGGTGGTGCGGACACT CGCCTGGCTGAGGAGTACGGCGCAAGGGTGGTGCGGACACT < 41bp 0.811204005309295 0.594473396227472 0.59222895 0.32330137 prediction 0.433461218163647 Functional Loss - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68700824 chr11:68700827 synonymous SNV . 0 24 hm5C_associated_SNPs_84283 0 0 1 0 1 IGHMBP2 chr11:68700767 3'AG 68700767 Downstream 61bp
chr15 69695942 69695942 1 + C T DLBC 69695940 + 69695920 69695960 41 GTCACAGTCACCAGCTGTTTCACGTGTGTGTGATCCTGGCC GTCACAGTCACCAGCTGTTTCATGTGTGTGTGATCCTGGCC < 41bp 0.71672724930306 0.447452902664356 0.20124128 0.12712449 prediction 0.43345449860612 Functional Loss - PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69695940 chr15:69695942 synonymous SNV . 0 23 hm5C_associated_SNPs_84285 0 0 1 0 1 PAQR5 chr15:69695920 3'AG 69695920 Downstream 23bp
chr12 51122459 51122459 1 + C T LUSC 51122456 + 51122436 51122476 41 GGCTTCGCGCTCTGGTGTCTCTGCAGGTAGGGATGGAAAAG GGCTTCGCGCTCTGGTGTCTCTGTAGGTAGGGATGGAAAAG < 41bp 0.736127074906676 0.51940009575739 0.33779585 0.22285873 prediction 0.433453958298571 Functional Loss - DIP2B ENSG00000066084 CDS Human protein_coding chr12:51122456 chr12:51122459 synonymous SNV . 0 24 hm5C_associated_SNPs_84286 0 0 1 0 1 DIP2B chr12:51122461 5'GT 51122461 Upstream 3bp
chr7 150174255 150174255 1 + T C LGG 150174254 + 150174234 150174274 41 GGAACTCTATCCTGGGGAGCCTCGTCTTCACCTCTCGGCTC GGAACTCTATCCTGGGGAGCCCCGTCTTCACCTCTCGGCTC < 41bp 0.774768152680514 0.558044093900137 0.06216955 0.10392928 prediction 0.433448117560753 Functional Loss - GIMAP8 ENSG00000171115 CDS Human protein_coding chr7:150174254 chr7:150174255 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_84287 0 0 0 0 1 GIMAP8 chr7:150174180 3'AG 150174180 Downstream 76bp
chrX 105139465 105139465 1 + G A SKCM 105139462 + 105139442 105139482 41 ACGCACACCGAGTAATTCACCGGGACATCAAAGGTCAGAAT ACGCACACCGAGTAATTCACCGGAACATCAAAGGTCAGAAT < 41bp 0.716721681165535 0.489018128197341 0.6150743 0.14994505 prediction 0.433443362331069 Functional Loss - NRK ENSG00000123572 CDS Human protein_coding chrX:105139462 chrX:105139465 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_84289 0 0 0 0 2 NRK chrX:105139426 3'AG 105139426 Downstream 40bp
chrX 105139465 105139465 1 + G A SKCM 105139462 + 105139442 105139482 41 ACGCACACCGAGTAATTCACCGGGACATCAAAGGTCAGAAT ACGCACACCGAGTAATTCACCGGAACATCAAAGGTCAGAAT < 41bp 0.716721681165535 0.489018128197341 0.6150743 0.14994505 prediction 0.433443362331069 Functional Loss - NRK ENSG00000123572 CDS Human protein_coding chrX:105139462 chrX:105139465 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_84289 0 0 0 0 2 NRK chrX:105139516 5'GT 105139516 Upstream 52bp
chr1 47034159 47034159 1 + G A UCEC 47034156 + 47034136 47034176 41 TATATTTTCTGGTTTCAGATCACGATGAGCAATGCCTGACA TATATTTTCTGGTTTCAGATCACAATGAGCAATGCCTGACA < 41bp 0.738880890130561 0.522159265469794 0.18132287 0.038882285 prediction 0.433443249321535 Functional Loss - MKNK1 ENSG00000079277 CDS Human protein_coding chr1:47034156 chr1:47034159 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_84290 0 0 0 0 1 MKNK1 chr1:47034154 3'AG 47034154 Downstream 6bp
chr16 8814766 8814766 1 + G A rs146220717 8814763 + 8814743 8814783 41 ATGCAAAGAGTTCGTGTTCACAGGACCTGGGAAGCAGCGGA ATGCAAAGAGTTCGTGTTCACAGAACCTGGGAAGCAGCGGA < 41bp 0.751627917561385 0.534910789017015 0.78807354 0.45836273 prediction 0.433434257088738 Functional Loss - ABAT ENSG00000183044 UTR5 Human protein_coding chr16:8814763 chr16:8814766 . . 0 24 hm5C_associated_SNPs_84293 0 0 0 0 1 ABAT chr16:8814791 5'GT 8814791 Upstream 26bp
chr17 7189135 7189135 1 + A C SKCM 7189131 + 7189111 7189151 41 TGGTTCATCGTGGCCGAGCTCTTCAGCCAGGGACCCCGCCC TGGTTCATCGTGGCCGAGCTCTTCCGCCAGGGACCCCGCCC < 41bp 0.71671692075556 0.287284158671217 0.206779 0.16600466 prediction 0.43343384151112 Functional Loss - SLC2A4 ENSG00000181856 CDS Human protein_coding chr17:7189131 chr17:7189135 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_84294 0 0 1 0 1 SLC2A4 chr17:7189227 5'GT 7189227 Upstream 93bp
chr16 90028254 90028254 1 + G A UCEC 90028251 + 90028231 90028271 41 CCTGCACGCGTTGTACACAACTGGGACTTTGAGCCTCGAAA CCTGCACGCGTTGTACACAACTGAGACTTTGAGCCTCGAAA < 41bp 0.795925459166783 0.579211531304751 0.38197213 0.29590946 prediction 0.433427855724065 Functional Loss - DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028251 chr16:90028254 stopgain 1.000 1 24 hm5C_associated_SNPs_84296 0 0 1 0 1 DEF8 chr16:90028272 5'GT 90028272 Upstream 19bp
chr2 233271824 233271824 1 + C T rs149899861 233271822 + 233271802 233271842 41 GCAGCCGAGGCCCTGGGTGCCGCCAAGAAGCTGCAGCCTGC GCAGCCGAGGCCCTGGGTGCCGTCAAGAAGCTGCAGCCTGC < 41bp 0.843601008571017 0.626888390718627 0.68020296 0.07494655 prediction 0.433425235704781 Functional Loss - ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233271822 chr2:233271824 nonsynonymous SNV 0.002 3 23 hm5C_associated_SNPs_84297 0 0 0 0 2 ALPPL2 chr2:233271767 3'AG 233271767 Downstream 58bp
chr2 233271824 233271824 1 + C T rs149899861 233271822 + 233271802 233271842 41 GCAGCCGAGGCCCTGGGTGCCGCCAAGAAGCTGCAGCCTGC GCAGCCGAGGCCCTGGGTGCCGTCAAGAAGCTGCAGCCTGC < 41bp 0.843601008571017 0.626888390718627 0.68020296 0.07494655 prediction 0.433425235704781 Functional Loss - ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233271822 chr2:233271824 nonsynonymous SNV 0.002 3 23 hm5C_associated_SNPs_84297 0 0 0 0 2 ALPPL2 chr2:233271883 5'GT 233271883 Upstream 60bp
chr18 14763784 14763784 1 + C T UCEC 14763781 + 14763761 14763801 41 GGAAAAAACACCTGACGAGGCTGCACGCTTGGTGGAGGGAA GGAAAAAACACCTGACGAGGCTGTACGCTTGGTGGAGGGAA < 41bp 0.716707556355445 0.497087821587643 0.058380604 0.060289472 prediction 0.43341511271089 Functional Loss - ANKRD30B ENSG00000180777 CDS Human protein_coding chr18:14763781 chr18:14763784 nonsynonymous SNV 0.016 1 24 hm5C_associated_SNPs_84303 0 0 0 0 1 ANKRD30B chr18:14763685 3'AG 14763685 Downstream 100bp
chr1 12819360 12819360 1 + C T HNSC 12819357 + 12819337 12819377 41 ACAACCCGGGGCTGCCTCCACTCCGCACTTGGAATGGACAG ACAACCCGGGGCTGCCTCCACTCTGCACTTGGAATGGACAG < 41bp 0.747350050472208 0.530642636533307 0.06828648 0.061763525 prediction 0.433414827877802 Functional Loss - C1orf158 ENSG00000157330 CDS Human protein_coding chr1:12819357 chr1:12819360 nonsynonymous SNV 0.037 3 24 hm5C_associated_SNPs_84304 0 0 0 0 1 C1orf158 chr1:12819420 5'GT 12819420 Upstream 61bp
chr3 140397328 140397328 1 + T C BRCA 140397327 + 140397307 140397347 41 GCTGCACAGCCAGCAGCAATCTCAACTGCTACTACTATGAG GCTGCACAGCCAGCAGCAATCCCAACTGCTACTACTATGAG < 41bp 0.80159916009034 0.584895029542937 0.1972706 0.3987247 prediction 0.433408261094806 Functional Loss - TRIM42 ENSG00000155890 CDS Human protein_coding chr3:140397327 chr3:140397328 nonsynonymous SNV 0.458 0 22 hm5C_associated_SNPs_84305 0 0 0 0 1 TRIM42 chr3:140397412 5'GT 140397412 Upstream 85bp
chr16 77227419 77227419 1 + C T COAD 77227417 + 77227397 77227437 41 AGAGGCCCTGTCAAGCACCTCTCGGCTCTGGAGTCCTGCAG AGAGGCCCTGTCAAGCACCTCTTGGCTCTGGAGTCCTGCAG < 41bp 0.716703897391359 0.455724119502496 0.3077381 0.15773022 prediction 0.433407794782717 Functional Loss - MON1B ENSG00000103111 CDS Human protein_coding chr16:77227417 chr16:77227419 nonsynonymous SNV 0.008 1 23 hm5C_associated_SNPs_84306 0 0 1 0 1 MON1B chr16:77227348 3'AG 77227348 Downstream 72bp
chr15 65856658 65856658 1 + C T SKCM 65856655 + 65856635 65856675 41 AGCAATTGGAGTCACTACGTCACCGGTGCTGCCTTCTCTGA AGCAATTGGAGTCACTACGTCACTGGTGCTGCCTTCTCTGA < 41bp 0.716701882513831 0.498011784502945 0.19584954 0.22853708 prediction 0.433403765027662 Functional Loss - HACD3 ENSG00000074696 CDS Human protein_coding chr15:65856655 chr15:65856658 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_84307 0 0 1 2 1 HACD3 chr15:65856680 5'GT 65856680 Upstream 23bp
chr17 62523293 62523293 1 + G A GBM 62523290 + 62523270 62523310 41 TGACCATAAAGAAGAAAATACTGGAAATGAGGAGGTAGAGG TGACCATAAAGAAGAAAATACTGAAAATGAGGAGGTAGAGG < 41bp 0.779741909830371 0.563041298829727 0.3555346 0.31032908 prediction 0.433401222001287 Functional Loss - CEP95 ENSG00000258890 CDS Human protein_coding chr17:62523290 chr17:62523293 nonsynonymous SNV 0.018 3 24 hm5C_associated_SNPs_84308 0 0 1 0 2 CEP95 chr17:62523229 3'AG 62523229 Downstream 65bp
chr17 62523293 62523293 1 + G A GBM 62523290 + 62523270 62523310 41 TGACCATAAAGAAGAAAATACTGGAAATGAGGAGGTAGAGG TGACCATAAAGAAGAAAATACTGAAAATGAGGAGGTAGAGG < 41bp 0.779741909830371 0.563041298829727 0.3555346 0.31032908 prediction 0.433401222001287 Functional Loss - CEP95 ENSG00000258890 CDS Human protein_coding chr17:62523290 chr17:62523293 nonsynonymous SNV 0.018 3 24 hm5C_associated_SNPs_84308 0 0 1 0 2 CEP95 chr17:62523382 5'GT 62523382 Upstream 90bp
chr1 24661179 24661179 1 + G A BLCA 24661176 + 24661156 24661196 41 TTGTCCTCCAGCACTGGGGGCAGGAATGACCAAGGAAAGAG TTGTCCTCCAGCACTGGGGGCAGAAATGACCAAGGAAAGAG < 41bp 0.716700166180996 0.472470027370141 0.71468 0.5039857 prediction 0.433400332361993 Functional Loss - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24661176 chr1:24661179 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_84309 0 0 0 0 1 GRHL3 chr1:24661196 5'GT 24661196 Upstream 18bp
chr20 37570699 37570699 1 + T C SKCM 37570698 + 37570678 37570718 41 GAGTTGCTGTGTATATCCTTCTGGACCAGGCTCTCCTCTCT GAGTTGCTGTGTATATCCTTCCGGACCAGGCTCTCCTCTCT < 41bp 0.716700077931876 0.464010213477391 0.11446661 0.21733853 prediction 0.433400155863752 Functional Loss - FAM83D ENSG00000101447 CDS Human protein_coding chr20:37570698 chr20:37570699 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_84310 0 0 1 0 2 FAM83D chr20:37570602 3'AG 37570602 Downstream 98bp
chr20 37570699 37570699 1 + T C SKCM 37570698 + 37570678 37570718 41 GAGTTGCTGTGTATATCCTTCTGGACCAGGCTCTCCTCTCT GAGTTGCTGTGTATATCCTTCCGGACCAGGCTCTCCTCTCT < 41bp 0.716700077931876 0.464010213477391 0.11446661 0.21733853 prediction 0.433400155863752 Functional Loss - FAM83D ENSG00000101447 CDS Human protein_coding chr20:37570698 chr20:37570699 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_84310 0 0 1 0 2 FAM83D chr20:37570769 5'GT 37570769 Upstream 71bp
chr7 141420765 141420765 1 + C T UCEC 141420763 + 141420743 141420783 41 CTTTGCATGAAGTTTATGCTCACGCAGTGCTTGGGCATCAC CTTTGCATGAAGTTTATGCTCATGCAGTGCTTGGGCATCAC < 41bp 0.716699515078662 0.436244165017918 0.06603336 0.17635515 prediction 0.433399030157324 Functional Loss - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141420763 chr7:141420765 synonymous SNV . 0 23 hm5C_associated_SNPs_84311 0 0 0 0 2 WEE2 chr7:141420735 3'AG 141420735 Downstream 31bp
chr7 141420765 141420765 1 + C T UCEC 141420763 + 141420743 141420783 41 CTTTGCATGAAGTTTATGCTCACGCAGTGCTTGGGCATCAC CTTTGCATGAAGTTTATGCTCATGCAGTGCTTGGGCATCAC < 41bp 0.716699515078662 0.436244165017918 0.06603336 0.17635515 prediction 0.433399030157324 Functional Loss - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141420763 chr7:141420765 synonymous SNV . 0 23 hm5C_associated_SNPs_84311 0 0 0 0 2 WEE2 chr7:141420856 5'GT 141420856 Upstream 92bp
chr5 3599391 3599391 1 + C T COAD 3599389 + 3599369 3599409 41 GGGGTGCACCCCGCCACCTTCGCAGCCCACACGGCGCCGGC GGGGTGCACCCCGCCACCTTCGTAGCCCACACGGCGCCGGC < 41bp 0.716697841872151 0.456287603842207 0.42743957 0.4543837 prediction 0.433395683744302 Functional Loss - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3599389 chr5:3599391 nonsynonymous SNV 0.832 3 23 hm5C_associated_SNPs_84313 0 0 0 0 1 IRX1 chr5:3599339 3'AG 3599339 Downstream 53bp
chr1 15386773 15386773 1 + G A SKCM 15386770 + 15386750 15386790 41 ACCGAGCGACATCAACTCCCCTCGACACCGGACACACTCCC ACCGAGCGACATCAACTCCCCTCAACACCGGACACACTCCC < 41bp 0.716696071123368 0.486407421170263 0.46693248 0.052726477 prediction 0.433392142246735 Functional Loss - KAZN ENSG00000189337 CDS Human protein_coding chr1:15386770 chr1:15386773 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_84314 0 0 1 0 1 KAZN chr1:15386798 5'GT 15386798 Upstream 26bp
chr1 15386772 15386772 1 + C T UCEC 15386770 + 15386750 15386790 41 ACCGAGCGACATCAACTCCCCTCGACACCGGACACACTCCC ACCGAGCGACATCAACTCCCCTTGACACCGGACACACTCCC < 41bp 0.716696071123368 0.434964963931548 0.46693248 0.03174746 prediction 0.433392142246735 Functional Loss - KAZN ENSG00000189337 CDS Human protein_coding chr1:15386770 chr1:15386772 stopgain 0.990 1 23 hm5C_associated_SNPs_84315 0 0 1 0 1 KAZN chr1:15386798 5'GT 15386798 Upstream 27bp
chr7 99917221 99917221 1 + G A SKCM 99917218 + 99917198 99917238 41 AATGACATGGAGGAGGACGACGAGGCCCCCAAACAAAAGAT AATGACATGGAGGAGGACGACGAAGCCCCCAAACAAAAGAT < 41bp 0.786564704367587 0.569872982303102 0.26589498 0.099687785 prediction 0.433383444128969 Functional Loss - SPDYE3 ENSG00000214300 CDS Human protein_coding chr7:99917218 chr7:99917221 synonymous SNV . 0 24 hm5C_associated_SNPs_84316 0 0 0 0 1 SPDYE3 chr7:99917188 3'AG 99917188 Downstream 34bp
chr15 89856164 89856164 1 + A T KIRP 89856160 + 89856140 89856180 41 GAGTAAGAGCCTGAACTATACGGGAGAGAAAAAGGAGAAAC GAGTAAGAGCCTGAACTATACGGGTGAGAAAAAGGAGAAAC < 41bp 0.885472275982661 0.668781932457893 0.4913519 0.40450382 prediction 0.433380687049535 Functional Loss - FANCI ENSG00000140525 CDS Human protein_coding chr15:89856160 chr15:89856164 synonymous SNV . 0 25 hm5C_associated_SNPs_84319 0 0 1 0 2 FANCI chr15:89856135 3'AG 89856135 Downstream 30bp
chr15 89856164 89856164 1 + A T KIRP 89856160 + 89856140 89856180 41 GAGTAAGAGCCTGAACTATACGGGAGAGAAAAAGGAGAAAC GAGTAAGAGCCTGAACTATACGGGTGAGAAAAAGGAGAAAC < 41bp 0.885472275982661 0.668781932457893 0.4913519 0.40450382 prediction 0.433380687049535 Functional Loss - FANCI ENSG00000140525 CDS Human protein_coding chr15:89856160 chr15:89856164 synonymous SNV . 0 25 hm5C_associated_SNPs_84319 0 0 1 0 2 FANCI chr15:89856203 5'GT 89856203 Upstream 40bp
chr19 50939408 50939408 1 + C T BLCA 50939405 + 50939385 50939425 41 TCCTTCAAGGAGTCCCACAACTCCGCCAGCAATGTGAGGAC TCCTTCAAGGAGTCCCACAACTCTGCCAGCAATGTGAGGAC < 41bp 0.716688975655573 0.497753043582987 0.1410281 0.08948398 prediction 0.433377951311145 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50939405 chr19:50939408 synonymous SNV . 0 24 hm5C_associated_SNPs_84320 0 0 0 0 1 MYBPC2 chr19:50939417 5'GT 50939417 Upstream 10bp
chr2 98797649 98797649 1 + G A SKCM 98797646 + 98797626 98797666 41 TTGTGGATATAAAAGCCAAACCGGAGAATGAGTCCGTGCAG TTGTGGATATAAAAGCCAAACCGAAGAATGAGTCCGTGCAG < 41bp 0.759603802669581 0.542915308600029 0.79148996 0.16562325 prediction 0.433376988139103 Functional Loss - VWA3B ENSG00000168658 CDS Human protein_coding chr2:98797646 chr2:98797649 nonsynonymous SNV 0.412 2 24 hm5C_associated_SNPs_84321 0 0 0 0 1 VWA3B chr2:98797675 5'GT 98797675 Upstream 27bp
chr17 40453425 40453425 1 + C T HNSC 40453422 + 40453402 40453442 41 CCCCAGGTGAAGGCCACCATCATCAGTGAGCAGCAGGCCAA CCCCAGGTGAAGGCCACCATCATTAGTGAGCAGCAGGCCAA < 41bp 0.746249876831328 0.529563896421582 0.14880902 0.091581106 prediction 0.433371960819492 Functional Loss - STAT5A ENSG00000126561 CDS Human protein_coding chr17:40453422 chr17:40453425 synonymous SNV . 0 24 hm5C_associated_SNPs_84323 0 0 1 0 1 STAT5A chr17:40453472 5'GT 40453472 Upstream 48bp
chr7 154875947 154875947 1 + G T LUSC 154875944 + 154875924 154875964 41 CTTCCAGCCAGAAGGGGACACGTGGCGGGAGCAGAAGGAGC CTTCCAGCCAGAAGGGGACACGTTGCGGGAGCAGAAGGAGC < 41bp 0.716683474410958 0.323510134191868 0.64802206 0.3866737 prediction 0.433366948821915 Functional Loss - HTR5A ENSG00000157219 CDS Human protein_coding chr7:154875944 chr7:154875947 nonsynonymous SNV 0.900 0 24 hm5C_associated_SNPs_84324 0 0 0 0 1 HTR5A chr7:154875865 3'AG 154875865 Downstream 83bp
chr1 206652411 206652411 1 + C T COAD 206652409 + 206652389 206652429 41 TCAGCACAGCACATCGCCCACACGACGGCAAGCAGCCCCCT TCAGCACAGCACATCGCCCACATGACGGCAAGCAGCCCCCT < 41bp 0.851839586606978 0.635157337927095 0.18064496 0.20480192 prediction 0.433364497359766 Functional Loss - IKBKE ENSG00000143466 CDS Human other chr1:206652409 chr1:206652411 nonsynonymous SNV 0.057 3 23 hm5C_associated_SNPs_84325 0 0 0 0 1 IKBKE chr1:206652476 5'GT 206652476 Upstream 66bp
chr13 45915494 45915494 1 + A C rs551945656 45915490 + 45915470 45915510 41 CCGGGGACTTGAGGCGGAGACACAAGGCTCCGTTCCACTGG CCGGGGACTTGAGGCGGAGACACACGGCTCCGTTCCACTGG < 41bp 0.920972717480995 0.704294515010123 0.89146155 0.7339236 prediction 0.433356404941744 Functional Loss - TPT1-AS1 ENSG00000170919 ncRNA_exonic Human processed_transcript chr13:45915490 chr13:45915494 . . 0 25 hm5C_associated_SNPs_84328 0 0 0 0 1 TPT1-AS1 chr13:45915522 5'GT 45915522 Upstream 29bp
chr5 52356848 52356848 1 + C T STAD 52356846 + 52356826 52356866 41 GTGAATGAGAATGGCAATATCACGGTTATTCAGGCTCACCG GTGAATGAGAATGGCAATATCATGGTTATTCAGGCTCACCG < 41bp 0.819890747058773 0.6032130126894 0.7984097 0.6693907 prediction 0.433355468738746 Functional Loss - ITGA2 ENSG00000164171 CDS Human protein_coding chr5:52356846 chr5:52356848 nonsynonymous SNV 0.912 3 23 hm5C_associated_SNPs_84329 0 0 1 0 1 ITGA2 chr5:52356876 5'GT 52356876 Upstream 29bp
chr11 113269692 113269692 1 + G A SKCM 113269689 + 113269669 113269709 41 CATCTTTCTCCCAGCAGACTCAGGAAACTACCTGAAGCGGG CATCTTTCTCCCAGCAGACTCAGAAAACTACCTGAAGCGGG < 41bp 0.795787583300695 0.579115840123046 0.9285609 0.891197 prediction 0.433343486355298 Functional Loss - ANKK1 ENSG00000170209 CDS Human protein_coding chr11:113269689 chr11:113269692 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_84334 0 0 0 0 1 ANKK1 chr11:113269686 3'AG 113269686 Downstream 7bp
chr18 8786016 8786016 1 + G A KIRC 8786013 + 8785993 8786033 41 GAGCCTGCGCCTCCGAGCCGCGCGGGAGCTGCACCGCCGCG GAGCCTGCGCCTCCGAGCCGCGCAGGAGCTGCACCGCCGCG < 41bp 0.810430111128316 0.593759159999062 0.8905577 0.8550068 prediction 0.433341902258509 Functional Loss - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8786013 chr18:8786016 nonsynonymous SNV 0.657 0 24 hm5C_associated_SNPs_84335 0 0 1 0 2 MTCL1 chr18:8785934 3'AG 8785934 Downstream 83bp
chr18 8786016 8786016 1 + G A KIRC 8786013 + 8785993 8786033 41 GAGCCTGCGCCTCCGAGCCGCGCGGGAGCTGCACCGCCGCG GAGCCTGCGCCTCCGAGCCGCGCAGGAGCTGCACCGCCGCG < 41bp 0.810430111128316 0.593759159999062 0.8905577 0.8550068 prediction 0.433341902258509 Functional Loss - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8786013 chr18:8786016 nonsynonymous SNV 0.657 0 24 hm5C_associated_SNPs_84335 0 0 1 0 2 MTCL1 chr18:8786089 5'GT 8786089 Upstream 74bp
chr1 20637145 20637145 1 + G A UCEC 20637142 + 20637122 20637162 41 GGGGCAGCCCTGCCCCTCACCGCGTCTGATGTTACCTCCTG GGGGCAGCCCTGCCCCTCACCGCATCTGATGTTACCTCCTG < 41bp 0.716668991282621 0.46496720688891 0.417868 0.2547837 prediction 0.433337982565242 Functional Loss - VWA5B1 ENSG00000158816 CDS Human antisense chr1:20637142 chr1:20637145 synonymous SNV . 0 24 hm5C_associated_SNPs_84336 0 0 0 0 1 VWA5B1 chr1:20637069 3'AG 20637069 Downstream 77bp
chr17 72346583 72346583 1 + G T UCEC 72346580 + 72346560 72346600 41 GGGCAGGGTGAGAAGGCTGGCATGGGACAGCTTCGGGAGCA GGGCAGGGTGAGAAGGCTGGCATTGGACAGCTTCGGGAGCA < 41bp 0.716666551461059 0.312764880358823 0.7614948 0.28674018 prediction 0.433333102922118 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72346580 chr17:72346583 nonsynonymous SNV 0.933 0 24 hm5C_associated_SNPs_84338 0 0 0 0 1 KIF19 chr17:72346540 3'AG 72346540 Downstream 44bp
chr2 220367130 220367130 1 + C T UCEC 220367127 + 220367107 220367147 41 AACAGGACGCAATCCCTCAACTACGGCTGCATCGTTGAGAA AACAGGACGCAATCCCTCAACTATGGCTGCATCGTTGAGAA < 41bp 0.733206313785741 0.516544767787785 0.36697978 0.30848062 prediction 0.433323091995911 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220367127 chr2:220367130 synonymous SNV . 0 24 hm5C_associated_SNPs_84339 0 0 1 0 2 GMPPA chr2:220367104 3'AG 220367104 Downstream 27bp
chr2 220367130 220367130 1 + C T UCEC 220367127 + 220367107 220367147 41 AACAGGACGCAATCCCTCAACTACGGCTGCATCGTTGAGAA AACAGGACGCAATCCCTCAACTATGGCTGCATCGTTGAGAA < 41bp 0.733206313785741 0.516544767787785 0.36697978 0.30848062 prediction 0.433323091995911 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220367127 chr2:220367130 synonymous SNV . 0 24 hm5C_associated_SNPs_84339 0 0 1 0 2 GMPPA chr2:220367163 5'GT 220367163 Upstream 34bp
chr13 114154442 114154442 1 + G A UCEC 114154439 + 114154419 114154459 41 GCCCAGAGATTCAACCATCCCACGTGCAGATCACCACTTTA GCCCAGAGATTCAACCATCCCACATGCAGATCACCACTTTA < 41bp 0.716658638715009 0.477605967670457 0.03696829 0.034574986 prediction 0.433317277430018 Functional Loss - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114154439 chr13:114154442 nonsynonymous SNV 0.152 1 24 hm5C_associated_SNPs_84343 0 0 1 0 1 TMCO3 chr13:114154464 5'GT 114154464 Upstream 23bp
chr13 114154441 114154441 1 + C T UCEC 114154439 + 114154419 114154459 41 GCCCAGAGATTCAACCATCCCACGTGCAGATCACCACTTTA GCCCAGAGATTCAACCATCCCATGTGCAGATCACCACTTTA < 41bp 0.716658638715009 0.432965531538678 0.03696829 0.06515646 prediction 0.433317277430018 Functional Loss - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114154439 chr13:114154441 nonsynonymous SNV 0.143 3 23 hm5C_associated_SNPs_84344 0 0 1 0 1 TMCO3 chr13:114154464 5'GT 114154464 Upstream 24bp
chr17 63223402 63223402 1 + G T UCEC 63223399 + 63223379 63223419 41 TCTTGCACCTGAAGCTTTTTCCAGATCAAAATGGATGTGCC TCTTGCACCTGAAGCTTTTTCCATATCAAAATGGATGTGCC < 41bp 0.716656763381218 0.323591380597291 0.366875 0.13661554 prediction 0.433313526762435 Functional Loss - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63223399 chr17:63223402 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_84345 0 0 0 0 1 RGS9 chr17:63223393 3'AG 63223393 Downstream 10bp
chr14 61924237 61924237 1 + G A SKCM 61924234 + 61924214 61924254 41 TTTGCCATAGGTGATGCTTGCAAGAGTAAAAGAAACAGGAG TTTGCCATAGGTGATGCTTGCAAAAGTAAAAGAAACAGGAG < 41bp 0.716654257159603 0.482811245339118 0.7188328 0.29992658 prediction 0.433308514319206 Functional Loss - PRKCH ENSG00000027075 CDS Human protein_coding chr14:61924234 chr14:61924237 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_84347 0 0 0 0 1 PRKCH chr14:61924224 3'AG 61924224 Downstream 14bp
chr6 31783547 31783547 1 + C T CESC 31783545 + 31783525 31783565 41 GGAACCGGCATGGCCAAAGCCGCGGCGATCGGCATCGACCT GGAACCGGCATGGCCAAAGCCGTGGCGATCGGCATCGACCT < 41bp 0.769046916496288 0.552394845256955 0.4286584 0.24888381 prediction 0.433304142478666 Functional Loss - HSPA1A ENSG00000204389 CDS Human protein_coding chr6:31783545 chr6:31783547 nonsynonymous SNV 0.892 0 23 hm5C_associated_SNPs_84349 0 0 1 0 1 HSPA1A chr6:31783608 5'GT 31783608 Upstream 62bp
chr6 43267376 43267376 1 + G T SKCM 43267372 + 43267352 43267392 41 GACCCCTTTGCAGGTTTGGGCGGCGGCGTCTGCTGCTGGTA GACCCCTTTGCAGGTTTGGGCGGCTGCGTCTGCTGCTGGTA < 41bp 0.720445183836609 0.503794292708076 0.9112843 0.886806 prediction 0.433301782257067 Functional Loss - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43267372 chr6:43267376 nonsynonymous SNV 0.725 4 25 hm5C_associated_SNPs_84350 0 0 1 0 1 SLC22A7 chr6:43267365 3'AG 43267365 Downstream 12bp
chr16 30680217 30680217 1 + T C COAD 30680216 + 30680196 30680236 41 TCCTGCCTGGGTCCGGCCCCCTGAGGCCGCCCGGACTCCAG TCCTGCCTGGGTCCGGCCCCCCGAGGCCGCCCGGACTCCAG < 41bp 0.804670561033612 0.588020500044808 0.37786242 0.38502753 prediction 0.433300121977609 Functional Loss - FBRS ENSG00000156860 CDS Human protein_coding chr16:30680216 chr16:30680217 synonymous SNV . 0 22 hm5C_associated_SNPs_84351 0 0 1 0 1 FBRS chr16:30680300 5'GT 30680300 Upstream 84bp
chr1 32694789 32694789 1 + G T CESC 32694786 + 32694766 32694806 41 GATGTAACCACAACCTCCACCAGGATTGGCAAGTTTGAGGC GATGTAACCACAACCTCCACCAGTATTGGCAAGTTTGAGGC < 41bp 0.931027935668872 0.714384397757823 0.7156846 0.15024826 prediction 0.433287075822097 Functional Loss - EIF3I ENSG00000084623 CDS Human protein_coding chr1:32694786 chr1:32694789 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_84356 0 0 1 0 2 EIF3I chr1:32694736 3'AG 32694736 Downstream 54bp
chr1 32694789 32694789 1 + G T CESC 32694786 + 32694766 32694806 41 GATGTAACCACAACCTCCACCAGGATTGGCAAGTTTGAGGC GATGTAACCACAACCTCCACCAGTATTGGCAAGTTTGAGGC < 41bp 0.931027935668872 0.714384397757823 0.7156846 0.15024826 prediction 0.433287075822097 Functional Loss - EIF3I ENSG00000084623 CDS Human protein_coding chr1:32694786 chr1:32694789 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_84356 0 0 1 0 2 EIF3I chr1:32694809 5'GT 32694809 Upstream 21bp
chr7 2748349 2748349 1 + C T rs148035334 2748347 + 2748327 2748367 41 TCAGCAAGTTCCTTCCAGGGCACGGTGAGCCGGGGCCCCAG TCAGCAAGTTCCTTCCAGGGCATGGTGAGCCGGGGCCCCAG < 41bp 0.806258859820332 0.589617343981659 0.23138604 0.24199376 prediction 0.433283031677346 Functional Loss - AMZ1 ENSG00000174945 CDS Human protein_coding chr7:2748347 chr7:2748349 synonymous SNV . 0 23 hm5C_associated_SNPs_84359 0 0 0 0 1 AMZ1 chr7:2748350 5'GT 2748350 Upstream 2bp
chr22 45828232 45828232 1 + G A UCEC 45828229 + 45828209 45828249 41 CTATTTCACACAATTTAATACAGGAAGTCGATAATGAGGAA CTATTTCACACAATTTAATACAGAAAGTCGATAATGAGGAA < 41bp 0.760214488555768 0.543574663399708 0.16598952 0.076697856 prediction 0.433279650312122 Functional Loss - RIBC2 ENSG00000128408 CDS Human protein_coding chr22:45828229 chr22:45828232 nonsynonymous SNV 0.025 0 24 hm5C_associated_SNPs_84360 0 0 1 0 1 RIBC2 chr22:45828164 3'AG 45828164 Downstream 69bp
chr12 109972413 109972413 1 + G T HNSC 109972411 + 109972391 109972431 41 TTCAGGACACCGGGGACACTCTGGGCAGCGTCCTCCGGGGC TTCAGGACACCGGGGACACTCTTGGCAGCGTCCTCCGGGGC < 41bp 0.898408401985251 0.681770595365919 0.9496087 0.18320316 prediction 0.433275613238663 Functional Loss - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109972411 chr12:109972413 synonymous SNV . 0 23 hm5C_associated_SNPs_84361 0 0 0 0 1 UBE3B chr12:109972396 3'AG 109972396 Downstream 18bp
chr7 100320703 100320703 1 + C T SKCM 100320700 + 100320680 100320720 41 TCCGAGTCTACTCCAATTTCCTCCGGGGAAAGCTGAAGCTG TCCGAGTCTACTCCAATTTCCTCTGGGGAAAGCTGAAGCTG < 41bp 0.731305602140711 0.514669302050281 0.32835495 0.26504254 prediction 0.433272600180859 Functional Loss - EPO ENSG00000130427 CDS Human protein_coding chr7:100320700 chr7:100320703 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_84363 0 0 0 0 1 EPO chr7:100320604 3'AG 100320604 Downstream 100bp
chr1 47550326 47550326 1 + G A rs148896426 47550323 + 47550303 47550343 41 GGAACACATTGCCCAAAACTCACGTCTGGAGCTCTTTCAAC GGAACACATTGCCCAAAACTCACATCTGGAGCTCTTTCAAC < 41bp 0.759594181022352 0.542957976488907 0.24443862 0.11185944 prediction 0.433272409066891 Functional Loss - CYP4Z1 ENSG00000186160 CDS Human protein_coding chr1:47550323 chr1:47550326 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_84364 0 0 0 0 2 CYP4Z1 chr1:47550292 3'AG 47550292 Downstream 35bp
chr1 47550326 47550326 1 + G A rs148896426 47550323 + 47550303 47550343 41 GGAACACATTGCCCAAAACTCACGTCTGGAGCTCTTTCAAC GGAACACATTGCCCAAAACTCACATCTGGAGCTCTTTCAAC < 41bp 0.759594181022352 0.542957976488907 0.24443862 0.11185944 prediction 0.433272409066891 Functional Loss - CYP4Z1 ENSG00000186160 CDS Human protein_coding chr1:47550323 chr1:47550326 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_84364 0 0 0 0 2 CYP4Z1 chr1:47550416 5'GT 47550416 Upstream 91bp
chr1 193053765 193053765 1 + C T SKCM 193053762 + 193053742 193053782 41 GGAATGACATCAAATGGTTTCACCATTGCAGACCCAGATGA GGAATGACATCAAATGGTTTCACTATTGCAGACCCAGATGA < 41bp 0.732758328460571 0.516124449353839 0.051662713 0.06590283 prediction 0.433267758213462 Functional Loss - TROVE2 ENSG00000116747 CDS Human protein_coding chr1:193053762 chr1:193053765 synonymous SNV . 0 24 hm5C_associated_SNPs_84365 0 0 1 0 2 TROVE2 chr1:193053709 3'AG 193053709 Downstream 57bp
chr1 193053765 193053765 1 + C T SKCM 193053762 + 193053742 193053782 41 GGAATGACATCAAATGGTTTCACCATTGCAGACCCAGATGA GGAATGACATCAAATGGTTTCACTATTGCAGACCCAGATGA < 41bp 0.732758328460571 0.516124449353839 0.051662713 0.06590283 prediction 0.433267758213462 Functional Loss - TROVE2 ENSG00000116747 CDS Human protein_coding chr1:193053762 chr1:193053765 synonymous SNV . 0 24 hm5C_associated_SNPs_84365 0 0 1 0 2 TROVE2 chr1:193053828 5'GT 193053828 Upstream 64bp
chr1 908275 908275 1 + G A rs145574509 908272 + 908252 908292 41 TGGCCGAGGCTCACTCTCCTCAGGCGGACAGACCAGCTGGG TGGCCGAGGCTCACTCTCCTCAGACGGACAGACCAGCTGGG < 41bp 0.813506847515666 0.596874665840298 0.91733766 0.8749348 prediction 0.433264363350736 Functional Loss - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:908272 chr1:908275 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_84366 0 0 0 0 1 PLEKHN1 chr1:908241 3'AG 908241 Downstream 35bp
chr6 159181747 159181747 1 + C T SKCM 159181745 + 159181725 159181765 41 GGCTAAGCTGGTTCTCCCTTCACGGCCCAGAAAACTCCAAG GGCTAAGCTGGTTCTCCCTTCATGGCCCAGAAAACTCCAAG < 41bp 0.716622624414298 0.44610898106772 0.21541631 0.08523673 prediction 0.433245248828595 Functional Loss - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159181745 chr6:159181747 nonsynonymous SNV 0.030 1 23 hm5C_associated_SNPs_84370 0 0 0 0 2 SYTL3 chr6:159181672 3'AG 159181672 Downstream 76bp
chr6 159181747 159181747 1 + C T SKCM 159181745 + 159181725 159181765 41 GGCTAAGCTGGTTCTCCCTTCACGGCCCAGAAAACTCCAAG GGCTAAGCTGGTTCTCCCTTCATGGCCCAGAAAACTCCAAG < 41bp 0.716622624414298 0.44610898106772 0.21541631 0.08523673 prediction 0.433245248828595 Functional Loss - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159181745 chr6:159181747 nonsynonymous SNV 0.030 1 23 hm5C_associated_SNPs_84370 0 0 0 0 2 SYTL3 chr6:159181777 5'GT 159181777 Upstream 31bp
chr20 44567888 44567888 1 + G T LUAD 44567885 + 44567865 44567905 41 CATGCAGGCTGGGAGAAGTGCTGGAGCCGGAGGGAGAATCG CATGCAGGCTGGGAGAAGTGCTGTAGCCGGAGGGAGAATCG < 41bp 0.933387299694575 0.716766600039228 0.57522535 0.35806996 prediction 0.433241399310695 Functional Loss - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44567885 chr20:44567888 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_84372 0 0 0 0 2 PCIF1 chr20:44567854 3'AG 44567854 Downstream 35bp
chr20 44567888 44567888 1 + G T LUAD 44567885 + 44567865 44567905 41 CATGCAGGCTGGGAGAAGTGCTGGAGCCGGAGGGAGAATCG CATGCAGGCTGGGAGAAGTGCTGTAGCCGGAGGGAGAATCG < 41bp 0.933387299694575 0.716766600039228 0.57522535 0.35806996 prediction 0.433241399310695 Functional Loss - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44567885 chr20:44567888 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_84372 0 0 0 0 2 PCIF1 chr20:44567978 5'GT 44567978 Upstream 91bp
chr11 64974124 64974124 1 + C T LUAD 64974122 + 64974102 64974142 41 GACTTCGTGCTGCGCTTCTTCTCAGAGAAGAGTGCTGGGAC GACTTCGTGCTGCGCTTCTTCTTAGAGAAGAGTGCTGGGAC < 41bp 0.716617476085528 0.429806635442017 0.23860085 0.286043 prediction 0.433234952171057 Functional Loss - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64974122 chr11:64974124 nonsynonymous SNV 0.542 4 23 hm5C_associated_SNPs_84375 0 0 1 0 1 CAPN1 chr11:64974145 5'GT 64974145 Upstream 22bp
chr14 96848756 96848756 1 + C T LAML 96848753 + 96848733 96848773 41 ACATGTTTGTCTCGAAAAGCCTGCGGTGTGCGGATGATGTG ACATGTTTGTCTCGAAAAGCCTGTGGTGTGCGGATGATGTG < 41bp 0.759434622978229 0.542818608706658 0.042846322 0.022351265 prediction 0.433232028543143 Functional Loss - GSKIP ENSG00000100744 CDS Human protein_coding chr14:96848753 chr14:96848756 nonsynonymous SNV 0.964 1 24 hm5C_associated_SNPs_84377 0 0 1 0 1 GSKIP chr14:96848842 5'GT 96848842 Upstream 87bp
chr13 96086252 96086252 1 + G A LUSC 96086249 + 96086229 96086269 41 TGGATGAACTGCGCAGGTAACGCGTTGGGTTCTTTCCATTG TGGATGAACTGCGCAGGTAACGCATTGGGTTCTTTCCATTG < 41bp 0.716612040112215 0.475377152354898 0.34390962 0.16650599 prediction 0.43322408022443 Functional Loss - CLDN10 ENSG00000134873 CDS Human protein_coding chr13:96086249 chr13:96086252 synonymous SNV . 0 24 hm5C_associated_SNPs_84380 0 0 0 0 1 CLDN10 chr13:96086301 5'GT 96086301 Upstream 50bp
chr13 96086251 96086251 1 + C T STAD 96086249 + 96086229 96086269 41 TGGATGAACTGCGCAGGTAACGCGTTGGGTTCTTTCCATTG TGGATGAACTGCGCAGGTAACGTGTTGGGTTCTTTCCATTG < 41bp 0.716612040112215 0.451415790380868 0.34390962 0.43799597 prediction 0.43322408022443 Functional Loss - CLDN10 ENSG00000134873 CDS Human protein_coding chr13:96086249 chr13:96086251 nonsynonymous SNV 0.989 3 23 hm5C_associated_SNPs_84381 0 0 0 0 1 CLDN10 chr13:96086301 5'GT 96086301 Upstream 51bp
chr1 160385871 160385871 1 + C T rs141773637 160385868 + 160385848 160385888 41 GCAGGGACCGCCGGGACCGACACCGCTCTAAGAGTCGAGAT GCAGGGACCGCCGGGACCGACACTGCTCTAAGAGTCGAGAT < 41bp 0.716611672538495 0.49422678071621 0.11249828 0.05922827 prediction 0.43322334507699 Functional Loss - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160385868 chr1:160385871 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_84382 0 0 0 0 1 VANGL2 chr1:160385852 3'AG 160385852 Downstream 20bp
chr17 2808645 2808645 1 + G T UCEC 2808643 + 2808623 2808663 41 GCCGCTCTCCCCTCCTCTCACGGCACCTCCCACCATGAAGG GCCGCTCTCCCCTCCTCTCACGTCACCTCCCACCATGAAGG < 41bp 0.716607104210195 0.353828463018944 0.77829075 0.07193181 prediction 0.43321420842039 Functional Loss - RAP1GAP2 ENSG00000132359 CDS Human protein_coding chr17:2808643 chr17:2808645 nonsynonymous SNV 0.424 2 23 hm5C_associated_SNPs_84384 0 0 0 0 2 RAP1GAP2 chr17:2808578 3'AG 2808578 Downstream 68bp
chr17 2808645 2808645 1 + G T UCEC 2808643 + 2808623 2808663 41 GCCGCTCTCCCCTCCTCTCACGGCACCTCCCACCATGAAGG GCCGCTCTCCCCTCCTCTCACGTCACCTCCCACCATGAAGG < 41bp 0.716607104210195 0.353828463018944 0.77829075 0.07193181 prediction 0.43321420842039 Functional Loss - RAP1GAP2 ENSG00000132359 CDS Human protein_coding chr17:2808643 chr17:2808645 nonsynonymous SNV 0.424 2 23 hm5C_associated_SNPs_84384 0 0 0 0 2 RAP1GAP2 chr17:2808662 5'GT 2808662 Upstream 18bp
chr17 64875163 64875163 1 + G A LUAD 64875160 + 64875140 64875180 41 ACCCAGCTGACATCCGAGTCCACGGTCAATGTTCTAAGTAA ACCCAGCTGACATCCGAGTCCACAGTCAATGTTCTAAGTAA < 41bp 0.716602504415742 0.474347193761257 0.076786935 0.10305491 prediction 0.433205008831484 Functional Loss - CACNG5 ENSG00000075429 CDS Human protein_coding chr17:64875160 chr17:64875163 synonymous SNV . 0 24 hm5C_associated_SNPs_84386 0 0 0 0 2 CACNG5 chr17:64875090 3'AG 64875090 Downstream 74bp
chr17 64875163 64875163 1 + G A LUAD 64875160 + 64875140 64875180 41 ACCCAGCTGACATCCGAGTCCACGGTCAATGTTCTAAGTAA ACCCAGCTGACATCCGAGTCCACAGTCAATGTTCTAAGTAA < 41bp 0.716602504415742 0.474347193761257 0.076786935 0.10305491 prediction 0.433205008831484 Functional Loss - CACNG5 ENSG00000075429 CDS Human protein_coding chr17:64875160 chr17:64875163 synonymous SNV . 0 24 hm5C_associated_SNPs_84386 0 0 0 0 2 CACNG5 chr17:64875176 5'GT 64875176 Upstream 14bp
chr22 46685396 46685396 1 + G A UCEC 46685393 + 46685373 46685413 41 CTGAGGACGGGAACCCTGACCGCGTCCTGGAGCTGCTCCTG CTGAGGACGGGAACCCTGACCGCATCCTGGAGCTGCTCCTG < 41bp 0.81398503682639 0.597388436609986 0.3876556 0.37900633 prediction 0.433193200432808 Functional Loss - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46685393 chr22:46685396 nonsynonymous SNV 0.048 1 24 hm5C_associated_SNPs_84391 0 0 1 0 2 TTC38 chr22:46685299 3'AG 46685299 Downstream 98bp
chr22 46685396 46685396 1 + G A UCEC 46685393 + 46685373 46685413 41 CTGAGGACGGGAACCCTGACCGCGTCCTGGAGCTGCTCCTG CTGAGGACGGGAACCCTGACCGCATCCTGGAGCTGCTCCTG < 41bp 0.81398503682639 0.597388436609986 0.3876556 0.37900633 prediction 0.433193200432808 Functional Loss - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46685393 chr22:46685396 nonsynonymous SNV 0.048 1 24 hm5C_associated_SNPs_84391 0 0 1 0 2 TTC38 chr22:46685458 5'GT 46685458 Upstream 63bp
chr20 43052731 43052731 1 + C T BRCA 43052728 + 43052708 43052748 41 GTGCAGGTGAGCTTGGAGGACTACATCAACGACCGCCAGTA GTGCAGGTGAGCTTGGAGGACTATATCAACGACCGCCAGTA < 41bp 0.716594792745963 0.493839998288272 0.9265514 0.71027374 prediction 0.433189585491926 Functional Loss - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43052728 chr20:43052731 synonymous SNV . 0 24 hm5C_associated_SNPs_84395 0 0 0 0 1 HNF4A chr20:43052658 3'AG 43052658 Downstream 74bp
chr3 52836407 52836407 1 + G A SKCM 52836404 + 52836384 52836424 41 CGGGTGTGGAGATGGAGTACCCCGAGAACGCTATCCTGGAC CGGGTGTGGAGATGGAGTACCCCAAGAACGCTATCCTGGAC < 41bp 0.794282371938345 0.577688595840336 0.27816963 0.42977095 prediction 0.433187552196018 Functional Loss - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52836404 chr3:52836407 nonsynonymous SNV 0.952 0 24 hm5C_associated_SNPs_84396 0 0 1 0 1 ITIH3 chr3:52836350 3'AG 52836350 Downstream 58bp
chr16 31383959 31383959 1 + G T OV 31383957 + 31383937 31383977 41 GTGGAGCCGACCATATCTGCCAGGACAATCTCGGCATCTCC GTGGAGCCGACCATATCTGCCATGACAATCTCGGCATCTCC < 41bp 0.716593714104678 0.351581483624854 0.7639886 0.20361748 prediction 0.433187428209355 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31383957 chr16:31383959 nonsynonymous SNV 0.919 2 23 hm5C_associated_SNPs_84397 0 0 0 0 1 ITGAX chr16:31383918 3'AG 31383918 Downstream 42bp
chr12 7069348 7069348 1 + C T STAD 7069345 + 7069325 7069365 41 GAGGCGCAGTACAAGTTCATCTACGTGGCCATCGCCCAGTT GAGGCGCAGTACAAGTTCATCTATGTGGCCATCGCCCAGTT < 41bp 0.734169753470516 0.517576221860933 0.3587172 0.32058826 prediction 0.433187063219165 Functional Loss - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7069345 chr12:7069348 synonymous SNV . 0 24 hm5C_associated_SNPs_84398 0 0 0 0 2 PTPN6 chr12:7069251 3'AG 7069251 Downstream 98bp
chr12 7069348 7069348 1 + C T STAD 7069345 + 7069325 7069365 41 GAGGCGCAGTACAAGTTCATCTACGTGGCCATCGCCCAGTT GAGGCGCAGTACAAGTTCATCTATGTGGCCATCGCCCAGTT < 41bp 0.734169753470516 0.517576221860933 0.3587172 0.32058826 prediction 0.433187063219165 Functional Loss - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7069345 chr12:7069348 synonymous SNV . 0 24 hm5C_associated_SNPs_84398 0 0 0 0 2 PTPN6 chr12:7069402 5'GT 7069402 Upstream 55bp
chr16 3189093 3189093 1 + A C COAD 3189089 + 3189069 3189109 41 AAGCGGGAGAACTCCCGGAACACCACCCTGGGTAAGCACCC AAGCGGGAGAACTCCCGGAACACCCCCCTGGGTAAGCACCC < 41bp 0.71658586946796 0.304512253409042 0.06289667 0.031573236 prediction 0.43317173893592 Functional Loss - ZNF213 ENSG00000085644 CDS Human protein_coding chr16:3189089 chr16:3189093 nonsynonymous SNV 0.021 0 25 hm5C_associated_SNPs_84399 0 0 0 0 1 ZNF213 chr16:3189099 5'GT 3189099 Upstream 7bp
chr5 479989 479989 1 - C T UCEC 479992 - 479972 480012 41 ACCGGATCCTGAATGTCTTCCACGAGCTGAACCTGAAGGAT ACCGGATCCTGAATGTCTTCCACAAGCTGAACCTGAAGGAT < 41bp 0.716582692501035 0.467303822600785 0.18387616 0.1882104 prediction 0.43316538500207 Functional Loss - SLC9A3 ENSG00000066230 CDS Human protein_coding chr5:479992 chr5:479989 nonsynonymous SNV 0.986 2 24 hm5C_associated_SNPs_84401 0 0 0 0 2 SLC9A3 chr5:479951 5'GT 479951 Upstream 39bp
chr5 479989 479989 1 - C T UCEC 479992 - 479972 480012 41 ACCGGATCCTGAATGTCTTCCACGAGCTGAACCTGAAGGAT ACCGGATCCTGAATGTCTTCCACAAGCTGAACCTGAAGGAT < 41bp 0.716582692501035 0.467303822600785 0.18387616 0.1882104 prediction 0.43316538500207 Functional Loss - SLC9A3 ENSG00000066230 CDS Human protein_coding chr5:479992 chr5:479989 nonsynonymous SNV 0.986 2 24 hm5C_associated_SNPs_84401 0 0 0 0 2 SLC9A3 chr5:480080 3'AG 480080 Downstream 92bp
chr14 74665674 74665674 1 + G A UCEC 74665671 + 74665651 74665691 41 CTCAATATTCTAGAGAAGCCCAAGAAGTAGCAGCTGCTTGC CTCAATATTCTAGAGAAGCCCAAAAAGTAGCAGCTGCTTGC < 41bp 0.772446446416316 0.555878704552906 0.26500326 0.11053696 prediction 0.433135483726821 Functional Loss - LIN52 ENSG00000205659 CDS Human protein_coding chr14:74665671 chr14:74665674 synonymous SNV . 0 24 hm5C_associated_SNPs_84411 0 0 1 0 1 LIN52 chr14:74665625 3'AG 74665625 Downstream 50bp
chr12 132394355 132394355 1 + G A rs140317597 132394352 + 132394332 132394372 41 CAGGACCTGCGCCTGTTCTACGAGAAGAACAAGACGTTGGT CAGGACCTGCGCCTGTTCTACGAAAAGAACAAGACGTTGGT < 41bp 0.716561357934457 0.470116211256283 0.5510765 0.2698396 prediction 0.433122715868913 Functional Loss - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132394352 chr12:132394355 synonymous SNV . 0 24 hm5C_associated_SNPs_84415 0 0 1 0 2 ULK1 chr12:132394320 3'AG 132394320 Downstream 36bp
chr12 132394355 132394355 1 + G A rs140317597 132394352 + 132394332 132394372 41 CAGGACCTGCGCCTGTTCTACGAGAAGAACAAGACGTTGGT CAGGACCTGCGCCTGTTCTACGAAAAGAACAAGACGTTGGT < 41bp 0.716561357934457 0.470116211256283 0.5510765 0.2698396 prediction 0.433122715868913 Functional Loss - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132394352 chr12:132394355 synonymous SNV . 0 24 hm5C_associated_SNPs_84415 0 0 1 0 2 ULK1 chr12:132394378 5'GT 132394378 Upstream 24bp
chr8 6264130 6264130 1 + G C rs2305023 6264129 + 6264109 6264149 41 CCGCGCATGCCCAGTGCCCGCGCGCGCCGCCAGGCTCGCAA CCGCGCATGCCCAGTGCCCGCCCGCGCCGCCAGGCTCGCAA < 41bp 0.86076573602351 0.644205250164174 0.845382 0.25891042 prediction 0.433120971718672 Functional Loss - MCPH1 ENSG00000246089 ncRNA_exonic Human protein_coding chr8:6264129 chr8:6264130 . . 0 22 hm5C_associated_SNPs_84416 1 0 0 0 1 MCPH1 chr8:6264210 5'GT 6264210 Upstream 81bp
chr8 118159376 118159376 1 + G A SKCM 118159373 + 118159353 118159393 41 TCAGCAATATGCTTCATTTTCATGATTGCAGAGGTCGTGGG TCAGCAATATGCTTCATTTTCATAATTGCAGAGGTCGTGGG < 41bp 0.71656042561564 0.484102067003189 0.08997747 0.11657807 prediction 0.43312085123128 Functional Loss - SLC30A8 ENSG00000164756 CDS Human protein_coding chr8:118159373 chr8:118159376 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_84417 0 0 0 0 1 SLC30A8 chr8:118159392 5'GT 118159392 Upstream 17bp
chr2 242285599 242285599 1 + C T SKCM 242285597 + 242285577 242285617 41 TCAGCACCCACATGCAGGATCTCCAGGAGGTGACCCAGGAC TCAGCACCCACATGCAGGATCTTCAGGAGGTGACCCAGGAC < 41bp 0.716554587172831 0.411770977207802 0.9406378 0.25040895 prediction 0.433109174345662 Functional Loss - SEPT2 ENSG00000168385 CDS Human protein_coding chr2:242285597 chr2:242285599 synonymous SNV . 0 23 hm5C_associated_SNPs_84419 0 0 1 0 2 SEPT2 chr2:242285581 3'AG 242285581 Downstream 19bp
chr2 242285599 242285599 1 + C T SKCM 242285597 + 242285577 242285617 41 TCAGCACCCACATGCAGGATCTCCAGGAGGTGACCCAGGAC TCAGCACCCACATGCAGGATCTTCAGGAGGTGACCCAGGAC < 41bp 0.716554587172831 0.411770977207802 0.9406378 0.25040895 prediction 0.433109174345662 Functional Loss - SEPT2 ENSG00000168385 CDS Human protein_coding chr2:242285597 chr2:242285599 synonymous SNV . 0 23 hm5C_associated_SNPs_84419 0 0 1 0 2 SEPT2 chr2:242285664 5'GT 242285664 Upstream 66bp
chr12 54970481 54970481 1 + A C rs200779298 54970477 + 54970457 54970497 41 GCAGAAATGGAAGGAACGGGCAGCAAGTGGTGGGTACCATG GCAGAAATGGAAGGAACGGGCAGCCAGTGGTGGGTACCATG < 41bp 0.716551112412728 0.300151783558889 0.14531246 0.3990475 prediction 0.433102224825455 Functional Loss - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54970477 chr12:54970481 synonymous SNV . 0 25 hm5C_associated_SNPs_84420 0 0 0 0 1 PDE1B chr12:54970485 5'GT 54970485 Upstream 5bp
chr3 128749650 128749650 1 + C T rs370403458 128749647 + 128749627 128749667 41 GACCAGAGACCCAGACCCCACTCCAGAGGGAGCCTGGCAGT GACCAGAGACCCAGACCCCACTCTAGAGGGAGCCTGGCAGT < 41bp 0.736723430916994 0.520173683681729 0.93294984 0.807886 prediction 0.433099494470528 Functional Loss - EFCC1 ENSG00000114654 CDS Human protein_coding chr3:128749647 chr3:128749650 nonsynonymous SNV 0.693 0 24 hm5C_associated_SNPs_84421 0 0 0 0 1 EFCC1 chr3:128749703 5'GT 128749703 Upstream 54bp
chr17 7612580 7612580 1 + C T LUSC 7612578 + 7612558 7612598 41 TGGGGCAGCAGGGGGGCTGGCGCTGCTCTTGCTGGGCGTGG TGGGGCAGCAGGGGGGCTGGCGTTGCTCTTGCTGGGCGTGG < 41bp 0.795905885607406 0.579357432708904 0.40425378 0.46495065 prediction 0.433096905797004 Functional Loss - EFNB3 ENSG00000108947 CDS Human protein_coding chr17:7612578 chr17:7612580 synonymous SNV . 0 23 hm5C_associated_SNPs_84422 0 0 0 0 1 EFNB3 chr17:7612485 3'AG 7612485 Downstream 96bp
chr3 158523171 158523171 1 + G A UCEC 158523168 + 158523148 158523188 41 TAGGATATGCAAGTGAATACCACGAAATTCATGCTGCTGTA TAGGATATGCAAGTGAATACCACAAAATTCATGCTGCTGTA < 41bp 0.750229335935678 0.533686075576976 0.2833749 0.2021175 prediction 0.433086520717404 Functional Loss - MFSD1 ENSG00000118855 CDS Human protein_coding chr3:158523168 chr3:158523171 synonymous SNV . 0 24 hm5C_associated_SNPs_84424 0 0 1 0 2 MFSD1 chr3:158523151 3'AG 158523151 Downstream 21bp
chr3 158523171 158523171 1 + G A UCEC 158523168 + 158523148 158523188 41 TAGGATATGCAAGTGAATACCACGAAATTCATGCTGCTGTA TAGGATATGCAAGTGAATACCACAAAATTCATGCTGCTGTA < 41bp 0.750229335935678 0.533686075576976 0.2833749 0.2021175 prediction 0.433086520717404 Functional Loss - MFSD1 ENSG00000118855 CDS Human protein_coding chr3:158523168 chr3:158523171 synonymous SNV . 0 24 hm5C_associated_SNPs_84424 0 0 1 0 2 MFSD1 chr3:158523263 5'GT 158523263 Upstream 93bp
chr6 31677842 31677842 1 + C T UCEC 31677840 + 31677820 31677860 41 CCTGCCCTCTGTGCCCCTTCCACGGGCTGGGACATGCCTTG CCTGCCCTCTGTGCCCCTTCCATGGGCTGGGACATGCCTTG < 41bp 0.801551487329181 0.585009140862924 0.6047022 0.8394469 prediction 0.433084692932513 Functional Loss - LY6G6F ENSG00000204424;ENSG00000250641 CDS Human other chr6:31677840 chr6:31677842 nonsynonymous SNV 0.014 0 23 hm5C_associated_SNPs_84425 0 0 0 0 1 LY6G6F chr6:31677803 3'AG 31677803 Downstream 40bp
chr19 12858229 12858229 1 + C T COAD 12858226 + 12858206 12858246 41 TAGGAGCAGACAACTTTCATCTGCGTATGCATTGCTGAGTT TAGGAGCAGACAACTTTCATCTGTGTATGCATTGCTGAGTT < 41bp 0.740662764536676 0.524121851387187 0.38837367 0.23364872 prediction 0.433081826298978 Functional Loss - ASNA1 ENSG00000198356 CDS Human protein_coding chr19:12858226 chr19:12858229 synonymous SNV . 0 24 hm5C_associated_SNPs_84428 0 0 1 0 1 ASNA1 chr19:12858209 3'AG 12858209 Downstream 21bp
chr19 13051428 13051428 1 + G T LIHC 13051426 + 13051406 13051446 41 GACTGGGATGAAGAGATGGACGGAGAGTGGGAACCCCCAGT GACTGGGATGAAGAGATGGACGTAGAGTGGGAACCCCCAGT < 41bp 0.716540736953769 0.365545296521441 0.5142602 0.24835968 prediction 0.433081473907537 Functional Loss - CALR ENSG00000179218 CDS Human protein_coding chr19:13051426 chr19:13051428 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_84429 0 0 1 0 2 CALR chr19:13051355 3'AG 13051355 Downstream 74bp
chr19 13051428 13051428 1 + G T LIHC 13051426 + 13051406 13051446 41 GACTGGGATGAAGAGATGGACGGAGAGTGGGAACCCCCAGT GACTGGGATGAAGAGATGGACGTAGAGTGGGAACCCCCAGT < 41bp 0.716540736953769 0.365545296521441 0.5142602 0.24835968 prediction 0.433081473907537 Functional Loss - CALR ENSG00000179218 CDS Human protein_coding chr19:13051426 chr19:13051428 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_84429 0 0 1 0 2 CALR chr19:13051468 5'GT 13051468 Upstream 41bp
chr19 45285647 45285647 1 + G A SKCM 45285644 + 45285624 45285664 41 CAGCCATGGCCAACACTCCTCAAGAACTGGCAGCTCCTGGC CAGCCATGGCCAACACTCCTCAAAAACTGGCAGCTCCTGGC < 41bp 0.798860530826212 0.582320319630929 0.3221056 0.21322152 prediction 0.433080422390565 Functional Loss - CBLC ENSG00000142273 CDS Human protein_coding chr19:45285644 chr19:45285647 synonymous SNV . 0 24 hm5C_associated_SNPs_84430 0 0 0 0 1 CBLC chr19:45285627 3'AG 45285627 Downstream 21bp
chr7 44151920 44151920 1 + G A LGG 44151917 + 44151897 44151937 41 CGCTACCTTTCGCCAGATGCCACGGTGAGGCTACAGCCTGG CGCTACCTTTCGCCAGATGCCACAGTGAGGCTACAGCCTGG < 41bp 0.810268126813909 0.593732469300936 0.03892848 0.029737651 prediction 0.433071315025946 Functional Loss - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44151917 chr7:44151920 synonymous SNV . 0 24 hm5C_associated_SNPs_84433 0 0 0 0 1 AEBP1 chr7:44151920 5'GT 44151920 Upstream 1bp
chr3 141497718 141497718 1 + G A SKCM 141497715 + 141497695 141497735 41 ACTTCACTGAGTTCAGAGTGCTGGGGAAAGGTGGTTTTGGG ACTTCACTGAGTTCAGAGTGCTGAGGAAAGGTGGTTTTGGG < 41bp 0.780254951959616 0.563721128251737 0.5068589 0.35891134 prediction 0.433067647415756 Functional Loss - GRK7 ENSG00000114124 CDS Human protein_coding chr3:141497715 chr3:141497718 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_84435 0 0 0 0 1 GRK7 chr3:141497738 5'GT 141497738 Upstream 21bp
chr2 228128652 228128652 1 + G A SKCM 228128649 + 228128629 228128669 41 TCCAGGATCACCGGGACCTCCAGGACCGCCAGGTAAAGATG TCCAGGATCACCGGGACCTCCAGAACCGCCAGGTAAAGATG < 41bp 0.716530810222079 0.481027797108927 0.90659845 0.9021167 prediction 0.433061620444157 Functional Loss - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228128649 chr2:228128652 nonsynonymous SNV 0.929 5 24 hm5C_associated_SNPs_84436 0 0 0 0 1 COL4A3 chr2:228128660 5'GT 228128660 Upstream 9bp
chrX 37208580 37208580 1 + G C rs186752126 37208579 + 37208559 37208599 41 TTCCTGGCTCCAGCTAGGCTCGGCAGAAATAGGAGCGCGCA TTCCTGGCTCCAGCTAGGCTCCGCAGAAATAGGAGCGCGCA < 41bp 0.882052753508683 0.66552307227188 0.90199196 0.21595475 prediction 0.433059362473605 Functional Loss - PRRG1 ENSG00000130962 UTR5 Human other chrX:37208579 chrX:37208580 . . 0 22 hm5C_associated_SNPs_84437 0 0 0 0 1 PRRG1 chrX:37208648 5'GT 37208648 Upstream 69bp
chr16 55361532 55361532 1 + C T PAAD 55361529 + 55361509 55361549 41 TGGAATTGAGTGGCGCCGGTCGCCGAAAGAACGCGACCCGG TGGAATTGAGTGGCGCCGGTCGCTGAAAGAACGCGACCCGG < 41bp 0.720472888327736 0.503943390495525 0.8092393 0.41221577 prediction 0.433058995664423 Functional Loss - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55361529 chr16:55361532 stopgain 0.118 1 24 hm5C_associated_SNPs_84438 0 0 0 0 1 IRX6 chr16:55361498 3'AG 55361498 Downstream 35bp
chr14 90450886 90450886 1 + G A rs34452707 90450883 + 90450863 90450903 41 ATGGTTGAGCCCCTTATACCCACGAATTGCTGATGGAACCC ATGGTTGAGCCCCTTATACCCACAAATTGCTGATGGAACCC < 41bp 0.775270329463 0.558747937853502 0.3033647 0.24658266 prediction 0.433044783218997 Functional Loss - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90450883 chr14:90450886 nonsynonymous SNV 0.405 1 24 hm5C_associated_SNPs_84443 1 0 1 0 1 TDP1 chr14:90450860 3'AG 90450860 Downstream 27bp
chr22 39482317 39482317 1 + C T SKCM 39482314 + 39482294 39482334 41 AACACGGTTTCCTTGAAGGCCGCCATGCAGAGCTGTGCTTC AACACGGTTTCCTTGAAGGCCGCTATGCAGAGCTGTGCTTC < 41bp 0.755399353965086 0.53888007944551 0.110574484 0.02217871 prediction 0.433038549039151 Functional Loss - APOBEC3G ENSG00000239713 CDS Human protein_coding chr22:39482314 chr22:39482317 nonsynonymous SNV 0.023 4 24 hm5C_associated_SNPs_84444 0 0 0 0 1 APOBEC3G chr22:39482284 3'AG 39482284 Downstream 34bp
chr19 45528958 45528958 1 + G T SARC 45528955 + 45528935 45528975 41 GACCAGCAGGGACAGATGCGCCGGATGGATCCTGTGCTTTC GACCAGCAGGGACAGATGCGCCGTATGGATCCTGTGCTTTC < 41bp 0.716518498698345 0.312126124469505 0.8455032 0.3013178 prediction 0.433036997396689 Functional Loss - RELB ENSG00000104856 CDS Human protein_coding chr19:45528955 chr19:45528958 synonymous SNV . 0 24 hm5C_associated_SNPs_84445 0 0 0 0 1 RELB chr19:45528864 3'AG 45528864 Downstream 95bp
chr1 26508997 26508997 1 + C T rs2802347 26508995 + 26508975 26509015 41 GCCACGTGGCTGGGATCTGCCACAACATCCTGGTCTGCTGC GCCACGTGGCTGGGATCTGCCATAACATCCTGGTCTGCTGC < 41bp 0.850381666432063 0.633863849638745 0.32701573 0.16992441 prediction 0.433035633586636 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26508995 chr1:26508997 stopgain . 0 23 hm5C_associated_SNPs_84446 0 0 1 0 3 CNKSR1 chr1:26508971 3'AG 26508971 Downstream 27bp
chr1 26508997 26508997 1 + C T rs2802347 26508995 + 26508975 26509015 41 GCCACGTGGCTGGGATCTGCCACAACATCCTGGTCTGCTGC GCCACGTGGCTGGGATCTGCCATAACATCCTGGTCTGCTGC < 41bp 0.850381666432063 0.633863849638745 0.32701573 0.16992441 prediction 0.433035633586636 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26508995 chr1:26508997 stopgain . 0 23 hm5C_associated_SNPs_84446 0 0 1 0 3 CNKSR1 chr1:26508976 3'AG 26508976 Downstream 22bp
chr1 26508997 26508997 1 + C T rs2802347 26508995 + 26508975 26509015 41 GCCACGTGGCTGGGATCTGCCACAACATCCTGGTCTGCTGC GCCACGTGGCTGGGATCTGCCATAACATCCTGGTCTGCTGC < 41bp 0.850381666432063 0.633863849638745 0.32701573 0.16992441 prediction 0.433035633586636 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26508995 chr1:26508997 stopgain . 0 23 hm5C_associated_SNPs_84446 0 0 1 0 3 CNKSR1 chr1:26509075 5'GT 26509075 Upstream 79bp
chr3 12845062 12845062 1 + G A SKCM 12845059 + 12845039 12845079 41 CTGGACGAGGACAGCGAGCGCAAGGTGGTGAAGATGCTGCT CTGGACGAGGACAGCGAGCGCAAAGTGGTGAAGATGCTGCT < 41bp 0.716517461819453 0.470814636645675 0.9058506 0.49140128 prediction 0.433034923638906 Functional Loss - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12845059 chr3:12845062 synonymous SNV . 0 24 hm5C_associated_SNPs_84448 0 0 1 0 2 CAND2 chr3:12844987 3'AG 12844987 Downstream 76bp
chr3 12845062 12845062 1 + G A SKCM 12845059 + 12845039 12845079 41 CTGGACGAGGACAGCGAGCGCAAGGTGGTGAAGATGCTGCT CTGGACGAGGACAGCGAGCGCAAAGTGGTGAAGATGCTGCT < 41bp 0.716517461819453 0.470814636645675 0.9058506 0.49140128 prediction 0.433034923638906 Functional Loss - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12845059 chr3:12845062 synonymous SNV . 0 24 hm5C_associated_SNPs_84448 0 0 1 0 2 CAND2 chr3:12845130 5'GT 12845130 Upstream 69bp
chrX 9907359 9907359 1 + G A UCEC 9907356 + 9907336 9907376 41 ACCTGCAGGAGCAGCAGGAGCACGAAGAGGATTCGGGAAGC ACCTGCAGGAGCAGCAGGAGCACAAAGAGGATTCGGGAAGC < 41bp 0.799963070899857 0.583446038949996 0.7965404 0.67089033 prediction 0.433034063899722 Functional Loss - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9907356 chrX:9907359 nonsynonymous SNV 0.275 0 24 hm5C_associated_SNPs_84449 0 0 0 0 1 SHROOM2 chrX:9907406 5'GT 9907406 Upstream 48bp
chr7 128454895 128454895 1 + G T UCEC 128454892 + 128454872 128454912 41 AATGCTAATAAGAACATGAACAAGAATGCCAATGGGGTTAA AATGCTAATAAGAACATGAACAATAATGCCAATGGGGTTAA < 41bp 0.716516011635775 0.324497783049981 0.2546869 0.10946396 prediction 0.43303202327155 Functional Loss - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128454892 chr7:128454895 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_84450 0 0 1 0 1 CCDC136 chr7:128454973 5'GT 128454973 Upstream 79bp
chr16 12136849 12136849 1 + G A UCEC 12136846 + 12136826 12136866 41 ACATCGCCTCAGACGTGGGCCGGGGTCGCGCCTGGCTGCGC ACATCGCCTCAGACGTGGGCCGGAGTCGCGCCTGGCTGCGC < 41bp 0.775576486739803 0.559060834759236 0.9043241 0.88932395 prediction 0.433031303961135 Functional Loss - SNX29 ENSG00000048471 CDS Human protein_coding chr16:12136846 chr16:12136849 nonsynonymous SNV 0.932 2 24 hm5C_associated_SNPs_84451 0 0 1 0 2 SNX29 chr16:12136754 3'AG 12136754 Downstream 96bp
chr16 12136849 12136849 1 + G A UCEC 12136846 + 12136826 12136866 41 ACATCGCCTCAGACGTGGGCCGGGGTCGCGCCTGGCTGCGC ACATCGCCTCAGACGTGGGCCGGAGTCGCGCCTGGCTGCGC < 41bp 0.775576486739803 0.559060834759236 0.9043241 0.88932395 prediction 0.433031303961135 Functional Loss - SNX29 ENSG00000048471 CDS Human protein_coding chr16:12136846 chr16:12136849 nonsynonymous SNV 0.932 2 24 hm5C_associated_SNPs_84451 0 0 1 0 2 SNX29 chr16:12136934 5'GT 12136934 Upstream 86bp
chr1 170689027 170689027 1 + C T UCEC 170689024 + 170689004 170689044 41 CTTGCCCGCCGGGTGAACCTCACCGAGGCGAGAGTGCAGGT CTTGCCCGCCGGGTGAACCTCACTGAGGCGAGAGTGCAGGT < 41bp 0.751953051697424 0.53544116842979 0.43146253 0.39756662 prediction 0.433023766535268 Functional Loss - PRRX1 ENSG00000116132 CDS Human protein_coding chr1:170689024 chr1:170689027 synonymous SNV . 0 24 hm5C_associated_SNPs_84453 0 0 0 0 1 PRRX1 chr1:170689042 5'GT 170689042 Upstream 16bp
chr15 90767151 90767151 1 + G A UCEC 90767148 + 90767128 90767168 41 AGAGTCTTCAGCGGCCTCTACAAGGAGGTGAACCGTGAGAC AGAGTCTTCAGCGGCCTCTACAAAGAGGTGAACCGTGAGAC < 41bp 0.716510010979395 0.454406452921304 0.8507403 0.38818064 prediction 0.43302002195879 Functional Loss - SEMA4B ENSG00000185033 CDS Human protein_coding chr15:90767148 chr15:90767151 synonymous SNV . 0 24 hm5C_associated_SNPs_84454 0 0 0 0 2 SEMA4B chr15:90767070 3'AG 90767070 Downstream 82bp
chr15 90767151 90767151 1 + G A UCEC 90767148 + 90767128 90767168 41 AGAGTCTTCAGCGGCCTCTACAAGGAGGTGAACCGTGAGAC AGAGTCTTCAGCGGCCTCTACAAAGAGGTGAACCGTGAGAC < 41bp 0.716510010979395 0.454406452921304 0.8507403 0.38818064 prediction 0.43302002195879 Functional Loss - SEMA4B ENSG00000185033 CDS Human protein_coding chr15:90767148 chr15:90767151 synonymous SNV . 0 24 hm5C_associated_SNPs_84454 0 0 0 0 2 SEMA4B chr15:90767220 5'GT 90767220 Upstream 70bp
chr15 89398171 89398171 1 + G T STAD 89398167 + 89398147 89398187 41 AACTGAAGTGCCCTCTGCCTCAGAGGAACCATCCCCCTCAG AACTGAAGTGCCCTCTGCCTCAGATGAACCATCCCCCTCAG < 41bp 0.716509391491412 0.494922464019729 0.93081737 0.89369965 prediction 0.433018782982824 Functional Loss - ACAN ENSG00000157766 CDS Human protein_coding chr15:89398167 chr15:89398171 nonsynonymous SNV 0.403 1 25 hm5C_associated_SNPs_84455 0 0 0 0 1 ACAN chr15:89398083 3'AG 89398083 Downstream 89bp
chr10 72489939 72489939 1 + G A COAD 72489936 + 72489916 72489956 41 GGGCACACTCCCAGCAGCGCCAGGACCCCAGCCACGCTGAG GGGCACACTCCCAGCAGCGCCAGAACCCCAGCCACGCTGAG < 41bp 0.716508692336081 0.464694853103409 0.5219023 0.36124426 prediction 0.433017384672161 Functional Loss - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72489936 chr10:72489939 nonsynonymous SNV 0.977 5 24 hm5C_associated_SNPs_84456 0 0 0 0 3 ADAMTS14 chr10:72489858 3'AG 72489858 Downstream 82bp
chr10 72489939 72489939 1 + G A COAD 72489936 + 72489916 72489956 41 GGGCACACTCCCAGCAGCGCCAGGACCCCAGCCACGCTGAG GGGCACACTCCCAGCAGCGCCAGAACCCCAGCCACGCTGAG < 41bp 0.716508692336081 0.464694853103409 0.5219023 0.36124426 prediction 0.433017384672161 Functional Loss - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72489936 chr10:72489939 nonsynonymous SNV 0.977 5 24 hm5C_associated_SNPs_84456 0 0 0 0 3 ADAMTS14 chr10:72490005 5'GT 72490005 Upstream 67bp
chr10 72489939 72489939 1 + G A COAD 72489936 + 72489916 72489956 41 GGGCACACTCCCAGCAGCGCCAGGACCCCAGCCACGCTGAG GGGCACACTCCCAGCAGCGCCAGAACCCCAGCCACGCTGAG < 41bp 0.716508692336081 0.464694853103409 0.5219023 0.36124426 prediction 0.433017384672161 Functional Loss - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72489936 chr10:72489939 nonsynonymous SNV 0.977 5 24 hm5C_associated_SNPs_84456 0 0 0 0 3 ADAMTS14 chr10:72490014 5'GT 72490014 Upstream 76bp
chr17 38609376 38609376 1 + G A SKCM 38609373 + 38609353 38609393 41 ATGAAGGTCAATGGGGCGCCCCGGGAGGATGCCCGGCCTGT ATGAAGGTCAATGGGGCGCCCCGAGAGGATGCCCGGCCTGT < 41bp 0.716505201831749 0.461029400531132 0.90902376 0.5746371 prediction 0.433010403663499 Functional Loss - IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38609373 chr17:38609376 synonymous SNV . 0 24 hm5C_associated_SNPs_84459 0 0 1 0 1 IGFBP4 chr17:38609394 5'GT 38609394 Upstream 19bp
chr7 36194739 36194739 1 + A C BLCA 36194738 + 36194718 36194758 41 GGCTGGCCACCTGGAACTTGCAGGGCTGTTCCGTGGAGAAG GGCTGGCCACCTGGAACTTGCCGGGCTGTTCCGTGGAGAAG < 41bp 0.833661181872941 0.617162161856602 0.9282001 0.9041749 prediction 0.432998040032677 Functional Loss - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36194738 chr7:36194739 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_84462 0 0 1 0 1 EEPD1 chr7:36194811 5'GT 36194811 Upstream 73bp
chr1 150478082 150478082 1 + C T LUSC 150478079 + 150478059 150478099 41 TGTTGCAGGCACAGCAGAGCCTGCGGGCTGCAGGACTGGTC TGTTGCAGGCACAGCAGAGCCTGTGGGCTGCAGGACTGGTC < 41bp 0.752512165410476 0.536017641522685 0.20372304 0.1677123 prediction 0.432989047775582 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150478079 chr1:150478082 nonsynonymous SNV 0.016 2 24 hm5C_associated_SNPs_84464 0 0 1 0 2 TARS2 chr1:150478067 3'AG 150478067 Downstream 16bp
chr1 150478082 150478082 1 + C T LUSC 150478079 + 150478059 150478099 41 TGTTGCAGGCACAGCAGAGCCTGCGGGCTGCAGGACTGGTC TGTTGCAGGCACAGCAGAGCCTGTGGGCTGCAGGACTGGTC < 41bp 0.752512165410476 0.536017641522685 0.20372304 0.1677123 prediction 0.432989047775582 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150478079 chr1:150478082 nonsynonymous SNV 0.016 2 24 hm5C_associated_SNPs_84464 0 0 1 0 2 TARS2 chr1:150478181 5'GT 150478181 Upstream 100bp
chr19 5772937 5772937 1 + G A SKCM 5772934 + 5772914 5772954 41 CAGCCGCAGAACTGGACCACCATGATAAAGGAATTCGGGGG CAGCCGCAGAACTGGACCACCATAATAAAGGAATTCGGGGG < 41bp 0.716493937872803 0.473215946991806 0.2516331 0.43190718 prediction 0.432987875745606 Functional Loss - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5772934 chr19:5772937 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_84465 0 0 0 0 1 CATSPERD chr19:5772976 5'GT 5772976 Upstream 40bp
chr7 5342487 5342487 1 + T C COAD 5342486 + 5342466 5342506 41 CTGGGGTCCGCCGTGGCCTACTGCACCTACAGCCTCACCCG CTGGGGTCCGCCGTGGCCTACCGCACCTACAGCCTCACCCG < 41bp 0.803909137287555 0.587416942168328 0.2882099 0.1870515 prediction 0.432984390238454 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5342486 chr7:5342487 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_84466 0 0 0 1 1 SLC29A4 chr7:5342428 3'AG 5342428 Downstream 60bp
chr13 44456465 44456465 1 + C T CESC 44456462 + 44456442 44456482 41 TCTGCGTAGGTTGGCGAATGCTGCAGGATTTAATGTGGAGA TCTGCGTAGGTTGGCGAATGCTGTAGGATTTAATGTGGAGA < 41bp 0.754335702494023 0.537846204723973 0.10171282 0.09557736 prediction 0.432978995540098 Functional Loss - LACC1 ENSG00000179630 CDS Human protein_coding chr13:44456462 chr13:44456465 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_84468 0 0 0 0 1 LACC1 chr13:44456499 5'GT 44456499 Upstream 35bp
chr11 123476186 123476186 1 + G A UCEC 123476183 + 123476163 123476203 41 GGGAGCAGTGAGGCCCCCGTCTCGGTATGGGCAGTCAGCCT GGGAGCAGTGAGGCCCCCGTCTCAGTATGGGCAGTCAGCCT < 41bp 0.803053429506395 0.58656950820896 0.119102776 0.018611819 prediction 0.432967842594871 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123476183 chr11:123476186 synonymous SNV . 0 24 hm5C_associated_SNPs_84469 0 0 0 0 1 GRAMD1B chr11:123476186 5'GT 123476186 Upstream 1bp
chr11 47183083 47183083 1 + G A COAD 47183080 + 47183060 47183100 41 AGAGGCCAGTTGCCTGCCTTCCCGGACCCCTCCCCGGGTTG AGAGGCCAGTTGCCTGCCTTCCCAGACCCCTCCCCGGGTTG < 41bp 0.71648266723024 0.464284686317785 0.5043489 0.27743298 prediction 0.43296533446048 Functional Loss - C11orf49 ENSG00000149179 CDS Human protein_coding chr11:47183080 chr11:47183083 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_84470 0 0 1 0 2 C11orf49 chr11:47182997 3'AG 47182997 Downstream 87bp
chr11 47183083 47183083 1 + G A COAD 47183080 + 47183060 47183100 41 AGAGGCCAGTTGCCTGCCTTCCCGGACCCCTCCCCGGGTTG AGAGGCCAGTTGCCTGCCTTCCCAGACCCCTCCCCGGGTTG < 41bp 0.71648266723024 0.464284686317785 0.5043489 0.27743298 prediction 0.43296533446048 Functional Loss - C11orf49 ENSG00000149179 CDS Human protein_coding chr11:47183080 chr11:47183083 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_84470 0 0 1 0 2 C11orf49 chr11:47183015 3'AG 47183015 Downstream 69bp
chr4 113574350 113574350 1 + G T UCEC 113574348 + 113574328 113574368 41 AGCAGTAATAAATGCCTATACAGAAATTAACAAGAAACACT AGCAGTAATAAATGCCTATACATAAATTAACAAGAAACACT < 41bp 0.716481718870021 0.394573382835199 0.16836616 0.10499123 prediction 0.432963437740043 Functional Loss - LARP7 ENSG00000174720 CDS Human protein_coding chr4:113574348 chr4:113574350 stopgain 0.085 0 23 hm5C_associated_SNPs_84471 0 0 1 0 1 LARP7 chr4:113574392 5'GT 113574392 Upstream 43bp
chr11 93545108 93545108 1 + G T LUSC 93545105 + 93545085 93545125 41 TTCCAAAAAGTGATGTTTTACAAGATAACAAATGGAGTCAT TTCCAAAAAGTGATGTTTTACAATATAACAAATGGAGTCAT < 41bp 0.716481174294502 0.425335476555182 0.5287093 0.21914393 prediction 0.432962348589004 Functional Loss - MED17 ENSG00000042429 CDS Human protein_coding chr11:93545105 chr11:93545108 nonsynonymous SNV 0.992 3 24 hm5C_associated_SNPs_84472 0 0 0 0 1 MED17 chr11:93545019 3'AG 93545019 Downstream 90bp
chr15 57745940 57745940 1 + A C COAD 57745936 + 57745916 57745956 41 AGACTGAGATCAGGGATCTCCAGGACCAGCTCTCAGAAATG AGACTGAGATCAGGGATCTCCAGGCCCAGCTCTCAGAAATG < 41bp 0.716480715191746 0.297797914067371 0.75176716 0.8601968 prediction 0.432961430383491 Functional Loss - CGNL1 ENSG00000128849 CDS Human protein_coding chr15:57745936 chr15:57745940 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_84473 0 0 1 0 2 CGNL1 chr15:57745881 3'AG 57745881 Downstream 60bp
chr15 57745940 57745940 1 + A C COAD 57745936 + 57745916 57745956 41 AGACTGAGATCAGGGATCTCCAGGACCAGCTCTCAGAAATG AGACTGAGATCAGGGATCTCCAGGCCCAGCTCTCAGAAATG < 41bp 0.716480715191746 0.297797914067371 0.75176716 0.8601968 prediction 0.432961430383491 Functional Loss - CGNL1 ENSG00000128849 CDS Human protein_coding chr15:57745936 chr15:57745940 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_84473 0 0 1 0 2 CGNL1 chr15:57746016 5'GT 57746016 Upstream 77bp
chr3 184009927 184009927 1 + C T STAD 184009925 + 184009905 184009945 41 CCCACAGCCCTGCCCGCTTCCGCGTGCTGGGCACTCTCTCC CCCACAGCCCTGCCCGCTTCCGTGTGCTGGGCACTCTCTCC < 41bp 0.815949789719423 0.599474610740613 0.4780417 0.6818488 prediction 0.432950357957621 Functional Loss - ECE2 ENSG00000145194 CDS Human protein_coding chr3:184009925 chr3:184009927 synonymous SNV . 0 23 hm5C_associated_SNPs_84476 0 0 0 0 1 ECE2 chr3:184009850 3'AG 184009850 Downstream 78bp
chr17 7290375 7290375 1 + G A rs56159710 7290372 + 7290352 7290392 41 AAAGTGGGCAGCTTCCCAGCCTCGGCAGTGACGCTGGCAGA AAAGTGGGCAGCTTCCCAGCCTCAGCAGTGACGCTGGCAGA < 41bp 0.716475145620916 0.465910238443105 0.22788212 0.12820673 prediction 0.432950291241831 Functional Loss - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7290372 chr17:7290375 synonymous SNV . 0 24 hm5C_associated_SNPs_84477 0 0 0 0 3 TNK1 chr17:7290294 3'AG 7290294 Downstream 82bp
chr17 7290375 7290375 1 + G A rs56159710 7290372 + 7290352 7290392 41 AAAGTGGGCAGCTTCCCAGCCTCGGCAGTGACGCTGGCAGA AAAGTGGGCAGCTTCCCAGCCTCAGCAGTGACGCTGGCAGA < 41bp 0.716475145620916 0.465910238443105 0.22788212 0.12820673 prediction 0.432950291241831 Functional Loss - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7290372 chr17:7290375 synonymous SNV . 0 24 hm5C_associated_SNPs_84477 0 0 0 0 3 TNK1 chr17:7290309 3'AG 7290309 Downstream 67bp
chr17 7290375 7290375 1 + G A rs56159710 7290372 + 7290352 7290392 41 AAAGTGGGCAGCTTCCCAGCCTCGGCAGTGACGCTGGCAGA AAAGTGGGCAGCTTCCCAGCCTCAGCAGTGACGCTGGCAGA < 41bp 0.716475145620916 0.465910238443105 0.22788212 0.12820673 prediction 0.432950291241831 Functional Loss - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7290372 chr17:7290375 synonymous SNV . 0 24 hm5C_associated_SNPs_84477 0 0 0 0 3 TNK1 chr17:7290473 5'GT 7290473 Upstream 99bp
chr5 68531270 68531270 1 + C T COAD 68531268 + 68531248 68531288 41 AAGAACACCAACCAAATTGTCGCCATTAAGAAAGTGAGTTA AAGAACACCAACCAAATTGTCGTCATTAAGAAAGTGAGTTA < 41bp 0.749167263783743 0.532699375716145 0.09024122 0.15427476 prediction 0.432935776135195 Functional Loss - CDK7 ENSG00000134058 CDS Human protein_coding chr5:68531268 chr5:68531270 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_84479 0 0 1 0 2 CDK7 chr5:68531221 3'AG 68531221 Downstream 50bp
chr5 68531270 68531270 1 + C T COAD 68531268 + 68531248 68531288 41 AAGAACACCAACCAAATTGTCGCCATTAAGAAAGTGAGTTA AAGAACACCAACCAAATTGTCGTCATTAAGAAAGTGAGTTA < 41bp 0.749167263783743 0.532699375716145 0.09024122 0.15427476 prediction 0.432935776135195 Functional Loss - CDK7 ENSG00000134058 CDS Human protein_coding chr5:68531268 chr5:68531270 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_84479 0 0 1 0 2 CDK7 chr5:68531280 5'GT 68531280 Upstream 11bp
chr4 111441454 111441454 1 + G A SKCM 111441451 + 111441431 111441471 41 GTGCTTAACGTGAACGGTGTCAAGAACATCACACAGAAACG GTGCTTAACGTGAACGGTGTCAAAAACATCACACAGAAACG < 41bp 0.777510530568375 0.561043082412508 0.1636515 0.11642429 prediction 0.432934896311735 Functional Loss - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111441451 chr4:111441454 synonymous SNV . 0 24 hm5C_associated_SNPs_84480 0 0 0 0 2 ENPEP chr4:111441371 3'AG 111441371 Downstream 84bp
chr4 111441454 111441454 1 + G A SKCM 111441451 + 111441431 111441471 41 GTGCTTAACGTGAACGGTGTCAAGAACATCACACAGAAACG GTGCTTAACGTGAACGGTGTCAAAAACATCACACAGAAACG < 41bp 0.777510530568375 0.561043082412508 0.1636515 0.11642429 prediction 0.432934896311735 Functional Loss - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111441451 chr4:111441454 synonymous SNV . 0 24 hm5C_associated_SNPs_84480 0 0 0 0 2 ENPEP chr4:111441522 5'GT 111441522 Upstream 69bp
chr2 149243442 149243442 1 + C T SKCM 149243439 + 149243419 149243459 41 TTCTCCAGGGGTACCAGAATCTCCAGGCGTTCCAAGGACAG TTCTCCAGGGGTACCAGAATCTCTAGGCGTTCCAAGGACAG < 41bp 0.7722916238286 0.555825246694171 0.9503447 0.52021426 prediction 0.432932754268858 Functional Loss - MBD5 ENSG00000204406 CDS Human protein_coding chr2:149243439 chr2:149243442 stopgain 1.000 1 24 hm5C_associated_SNPs_84481 0 0 0 0 1 MBD5 chr2:149243519 5'GT 149243519 Upstream 78bp
chr17 48245356 48245356 1 + G A UCEC 48245353 + 48245333 48245373 41 TTGATACCACTCGGCAGAGGCTGGTGCTGGAGATTGGGGAC TTGATACCACTCGGCAGAGGCTGATGCTGGAGATTGGGGAC < 41bp 0.716458819079801 0.463513252112136 0.85290694 0.8729316 prediction 0.432917638159603 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48245353 chr17:48245356 nonsynonymous SNV 0.810 3 24 hm5C_associated_SNPs_84484 0 0 0 4 2 SGCA chr17:48245308 3'AG 48245308 Downstream 49bp
chr17 48245356 48245356 1 + G A UCEC 48245353 + 48245333 48245373 41 TTGATACCACTCGGCAGAGGCTGGTGCTGGAGATTGGGGAC TTGATACCACTCGGCAGAGGCTGATGCTGGAGATTGGGGAC < 41bp 0.716458819079801 0.463513252112136 0.85290694 0.8729316 prediction 0.432917638159603 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48245353 chr17:48245356 nonsynonymous SNV 0.810 3 24 hm5C_associated_SNPs_84484 0 0 0 4 2 SGCA chr17:48245380 5'GT 48245380 Upstream 25bp
chr10 69961659 69961659 1 + G A ESCA 69961656 + 69961636 69961676 41 GGTGTTCCCGAAGGCCACCCCGTGAGACTGGAGTGCCGCGT GGTGTTCCCGAAGGCCACCCCGTAAGACTGGAGTGCCGCGT < 41bp 0.71645812755166 0.482142276582703 0.3027202 0.13335606 prediction 0.43291625510332 Functional Loss - MYPN ENSG00000138347 CDS Human protein_coding chr10:69961656 chr10:69961659 synonymous SNV . 0 24 hm5C_associated_SNPs_84485 0 0 0 0 2 MYPN chr10:69961586 3'AG 69961586 Downstream 74bp
chr10 69961659 69961659 1 + G A ESCA 69961656 + 69961636 69961676 41 GGTGTTCCCGAAGGCCACCCCGTGAGACTGGAGTGCCGCGT GGTGTTCCCGAAGGCCACCCCGTAAGACTGGAGTGCCGCGT < 41bp 0.71645812755166 0.482142276582703 0.3027202 0.13335606 prediction 0.43291625510332 Functional Loss - MYPN ENSG00000138347 CDS Human protein_coding chr10:69961656 chr10:69961659 synonymous SNV . 0 24 hm5C_associated_SNPs_84485 0 0 0 0 2 MYPN chr10:69961751 5'GT 69961751 Upstream 93bp
chr10 6263667 6263667 1 + C T BLCA 6263664 + 6263644 6263684 41 CCTACCCTGAGGAGTATGCGCTGCGGGAGCAGGACAAGTAC CCTACCCTGAGGAGTATGCGCTGTGGGAGCAGGACAAGTAC < 41bp 0.716450166849185 0.495603819736572 0.6112963 0.5492814 prediction 0.432900333698369 Functional Loss - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6263664 chr10:6263667 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_84489 0 0 1 0 2 PFKFB3 chr10:6263604 3'AG 6263604 Downstream 64bp
chr10 6263667 6263667 1 + C T BLCA 6263664 + 6263644 6263684 41 CCTACCCTGAGGAGTATGCGCTGCGGGAGCAGGACAAGTAC CCTACCCTGAGGAGTATGCGCTGTGGGAGCAGGACAAGTAC < 41bp 0.716450166849185 0.495603819736572 0.6112963 0.5492814 prediction 0.432900333698369 Functional Loss - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6263664 chr10:6263667 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_84489 0 0 1 0 2 PFKFB3 chr10:6263708 5'GT 6263708 Upstream 42bp
chr16 20837186 20837186 1 + G A UCEC 20837183 + 20837163 20837203 41 ATCCAAGGGGAGAGAGCTAACACGCATCTCACTGGTTGCTG ATCCAAGGGGAGAGAGCTAACACACATCTCACTGGTTGCTG < 41bp 0.772975132784731 0.556531211805906 0.38661793 0.17665216 prediction 0.43288784195765 Functional Loss - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20837183 chr16:20837186 nonsynonymous SNV 0.969 3 24 hm5C_associated_SNPs_84492 0 0 1 0 2 REXO5 chr16:20837155 3'AG 20837155 Downstream 32bp
chr16 20837186 20837186 1 + G A UCEC 20837183 + 20837163 20837203 41 ATCCAAGGGGAGAGAGCTAACACGCATCTCACTGGTTGCTG ATCCAAGGGGAGAGAGCTAACACACATCTCACTGGTTGCTG < 41bp 0.772975132784731 0.556531211805906 0.38661793 0.17665216 prediction 0.43288784195765 Functional Loss - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20837183 chr16:20837186 nonsynonymous SNV 0.969 3 24 hm5C_associated_SNPs_84492 0 0 1 0 2 REXO5 chr16:20837270 5'GT 20837270 Upstream 85bp
chr10 112266825 112266825 1 + A T LUAD 112266821 + 112266801 112266841 41 CGACGGACCTCCGAGGCCTGCGCGACCCACCTACACTACAA CGACGGACCTCCGAGGCCTGCGCGTCCCACCTACACTACAA < 41bp 0.90522381738413 0.688780364192013 0.22703865 0.15828612 prediction 0.432886906384233 Functional Loss - DUSP5 ENSG00000138166 CDS Human protein_coding chr10:112266821 chr10:112266825 nonsynonymous SNV 0.900 1 25 hm5C_associated_SNPs_84493 0 0 1 0 1 DUSP5 chr10:112266912 5'GT 112266912 Upstream 88bp
chr7 141760158 141760158 1 + G A SKCM 141760155 + 141760135 141760175 41 GTTGTGAATGGGTCTCTAGACTGGGACAGCCAAGTGGAGGT GTTGTGAATGGGTCTCTAGACTGAGACAGCCAAGTGGAGGT < 41bp 0.716442679199562 0.481476122541816 0.7387347 0.20016891 prediction 0.432885358399125 Functional Loss - MGAM ENSG00000257335 CDS Human protein_coding chr7:141760155 chr7:141760158 stopgain 0.492 0 24 hm5C_associated_SNPs_84494 0 0 0 0 2 MGAM chr7:141760111 3'AG 141760111 Downstream 48bp
chr7 141760158 141760158 1 + G A SKCM 141760155 + 141760135 141760175 41 GTTGTGAATGGGTCTCTAGACTGGGACAGCCAAGTGGAGGT GTTGTGAATGGGTCTCTAGACTGAGACAGCCAAGTGGAGGT < 41bp 0.716442679199562 0.481476122541816 0.7387347 0.20016891 prediction 0.432885358399125 Functional Loss - MGAM ENSG00000257335 CDS Human protein_coding chr7:141760155 chr7:141760158 stopgain 0.492 0 24 hm5C_associated_SNPs_84494 0 0 0 0 2 MGAM chr7:141760173 5'GT 141760173 Upstream 16bp
chr5 139216458 139216458 1 + C T THCA 139216456 + 139216436 139216476 41 GATGACAAGTTCGGGACAGGCACGAAGAAGGTGACGCGAAT GATGACAAGTTCGGGACAGGCATGAAGAAGGTGACGCGAAT < 41bp 0.86214789880045 0.645712800041603 0.32877225 0.37698612 prediction 0.432870197517693 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139216456 chr5:139216458 nonsynonymous SNV 0.841 2 23 hm5C_associated_SNPs_84496 0 0 0 0 1 PSD2 chr5:139216396 3'AG 139216396 Downstream 63bp
chr12 112915480 112915480 1 + C T UCEC 112915478 + 112915458 112915498 41 ATCATACCAGGGTTGTCCTACACGATGGTGATCCCAATGAG ATCATACCAGGGTTGTCCTACATGATGGTGATCCCAATGAG < 41bp 0.716434782248272 0.41618585375296 0.2483449 0.36651427 prediction 0.432869564496544 Functional Loss - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915478 chr12:112915480 synonymous SNV . 0 23 hm5C_associated_SNPs_84497 2 0 1 0 2 PTPN11 chr12:112915455 3'AG 112915455 Downstream 26bp
chr12 112915480 112915480 1 + C T UCEC 112915478 + 112915458 112915498 41 ATCATACCAGGGTTGTCCTACACGATGGTGATCCCAATGAG ATCATACCAGGGTTGTCCTACATGATGGTGATCCCAATGAG < 41bp 0.716434782248272 0.41618585375296 0.2483449 0.36651427 prediction 0.432869564496544 Functional Loss - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915478 chr12:112915480 synonymous SNV . 0 23 hm5C_associated_SNPs_84497 2 0 1 0 2 PTPN11 chr12:112915534 5'GT 112915534 Upstream 55bp
chr16 2880469 2880469 1 + C T LUAD 2880467 + 2880447 2880487 41 TGCTGCTGCTCACGCTTGCCCTCCTGGGGGGCCCCACCTGG TGCTGCTGCTCACGCTTGCCCTTCTGGGGGGCCCCACCTGG < 41bp 0.809230755066338 0.592797674179034 0.09613988 0.1118688 prediction 0.432866161774609 Functional Loss - ZG16B ENSG00000162078 CDS Human protein_coding chr16:2880467 chr16:2880469 synonymous SNV . 0 23 hm5C_associated_SNPs_84498 0 0 0 0 2 ZG16B chr16:2880416 3'AG 2880416 Downstream 54bp
chr16 2880469 2880469 1 + C T LUAD 2880467 + 2880447 2880487 41 TGCTGCTGCTCACGCTTGCCCTCCTGGGGGGCCCCACCTGG TGCTGCTGCTCACGCTTGCCCTTCTGGGGGGCCCCACCTGG < 41bp 0.809230755066338 0.592797674179034 0.09613988 0.1118688 prediction 0.432866161774609 Functional Loss - ZG16B ENSG00000162078 CDS Human protein_coding chr16:2880467 chr16:2880469 synonymous SNV . 0 23 hm5C_associated_SNPs_84498 0 0 0 0 2 ZG16B chr16:2880494 5'GT 2880494 Upstream 26bp
chr7 2598810 2598810 1 + G C rs192943823 2598806 + 2598786 2598826 41 CCTGAGGGGCGGCCGGGCAGCGCCGCCACCATGTTCCTGGG CCTGAGGGGCGGCCGGGCAGCGCCCCCACCATGTTCCTGGG < 41bp 0.719354014277791 0.502921642009727 0.17537344 0.060498327 prediction 0.432864744536128 Functional Loss - IQCE ENSG00000106012 UTR5 Human protein_coding chr7:2598806 chr7:2598810 . . 0 25 hm5C_associated_SNPs_84499 0 0 1 0 1 IQCE chr7:2598851 5'GT 2598851 Upstream 42bp
chr20 42682973 42682973 1 + G A SKCM 42682970 + 42682950 42682990 41 AAAGAGACCTTCAGCCGACCCAGGAAAAAAGGCCAAGAACC AAAGAGACCTTCAGCCGACCCAGAAAAAAAGGCCAAGAACC < 41bp 0.78992810116145 0.573495762820478 0.9229938 0.91644335 prediction 0.432864676681944 Functional Loss - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42682970 chr20:42682973 nonsynonymous SNV 0.088 4 24 hm5C_associated_SNPs_84500 0 0 0 0 1 TOX2 chr20:42682939 3'AG 42682939 Downstream 35bp
chr1 107867518 107867518 1 + G T LUAD 107867515 + 107867495 107867535 41 CACTTGGCACGCTACTTTTACGCGATCTCAGACATAAAGGT CACTTGGCACGCTACTTTTACGCTATCTCAGACATAAAGGT < 41bp 0.716430107587097 0.354821413285776 0.40295517 0.083230466 prediction 0.432860215174195 Functional Loss - NTNG1 ENSG00000162631 CDS Human protein_coding chr1:107867515 chr1:107867518 synonymous SNV . 0 24 hm5C_associated_SNPs_84501 0 0 0 0 1 NTNG1 chr1:107867544 5'GT 107867544 Upstream 27bp
chr17 60522259 60522259 1 + C T rs147656413 60522256 + 60522236 60522276 41 AACCTGGCGGGATGATGCTTCTGCGAGATTACGGCCGCTAT AACCTGGCGGGATGATGCTTCTGTGAGATTACGGCCGCTAT < 41bp 0.757966791052361 0.541539018587939 0.22316977 0.14185262 prediction 0.432855544928842 Functional Loss - METTL2A ENSG00000087995 CDS Human protein_coding chr17:60522256 chr17:60522259 stopgain 0.997 1 24 hm5C_associated_SNPs_84502 0 0 1 0 2 METTL2A chr17:60522198 3'AG 60522198 Downstream 62bp
chr17 60522259 60522259 1 + C T rs147656413 60522256 + 60522236 60522276 41 AACCTGGCGGGATGATGCTTCTGCGAGATTACGGCCGCTAT AACCTGGCGGGATGATGCTTCTGTGAGATTACGGCCGCTAT < 41bp 0.757966791052361 0.541539018587939 0.22316977 0.14185262 prediction 0.432855544928842 Functional Loss - METTL2A ENSG00000087995 CDS Human protein_coding chr17:60522256 chr17:60522259 stopgain 0.997 1 24 hm5C_associated_SNPs_84502 0 0 1 0 2 METTL2A chr17:60522304 5'GT 60522304 Upstream 46bp
chr9 117002759 117002759 1 + G A HNSC 117002756 + 117002736 117002776 41 TGCCGGGACCCCGTGGGCAGCTGGGGCCCGAGGTGAGACTG TGCCGGGACCCCGTGGGCAGCTGAGGCCCGAGGTGAGACTG < 41bp 0.776139279082956 0.559716017697953 0.9071478 0.8617282 prediction 0.432846522770006 Functional Loss - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117002756 chr9:117002759 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_84505 0 0 1 0 1 COL27A1 chr9:117002767 5'GT 117002767 Upstream 9bp
chr19 49699765 49699765 1 + G T UCEC 49699763 + 49699743 49699783 41 TCGGGCCGTCCGGGTTGCTGCGGGGGCCGCTGCGGGGGGCG TCGGGCCGTCCGGGTTGCTGCGTGGGCCGCTGCGGGGGGCG < 41bp 0.912422361626906 0.696001715002188 0.92932427 0.79676366 prediction 0.432841293249436 Functional Loss - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49699763 chr19:49699765 nonsynonymous SNV 0.004 1 23 hm5C_associated_SNPs_84506 0 0 1 0 1 TRPM4 chr19:49699697 3'AG 49699697 Downstream 69bp
chr9 108120705 108120705 1 + G A UCEC 108120702 + 108120682 108120722 41 TCTTAACGATTCTGGTCATACTCGGTTCACTTGGTAAGCTA TCTTAACGATTCTGGTCATACTCAGTTCACTTGGTAAGCTA < 41bp 0.771009488520974 0.554596443931639 0.10076591 0.11896682 prediction 0.432826089178669 Functional Loss - SLC44A1 ENSG00000070214 CDS Human protein_coding chr9:108120702 chr9:108120705 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_84511 0 0 1 0 2 SLC44A1 chr9:108120625 3'AG 108120625 Downstream 81bp
chr9 108120705 108120705 1 + G A UCEC 108120702 + 108120682 108120722 41 TCTTAACGATTCTGGTCATACTCGGTTCACTTGGTAAGCTA TCTTAACGATTCTGGTCATACTCAGTTCACTTGGTAAGCTA < 41bp 0.771009488520974 0.554596443931639 0.10076591 0.11896682 prediction 0.432826089178669 Functional Loss - SLC44A1 ENSG00000070214 CDS Human protein_coding chr9:108120702 chr9:108120705 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_84511 0 0 1 0 2 SLC44A1 chr9:108120714 5'GT 108120714 Upstream 10bp
chr22 45121159 45121159 1 + C T UCEC 45121157 + 45121137 45121177 41 ACAGAGCTGGGGTCCTTCTTCACGGAGTACCTGCAGGTAGG ACAGAGCTGGGGTCCTTCTTCATGGAGTACCTGCAGGTAGG < 41bp 0.827490515360933 0.611081438384864 0.82530516 0.5975268 prediction 0.43281815395214 Functional Loss - PRR5;PRR5-ARHGAP8 ENSG00000186654;ENSG00000241484;ENSG00000248405 CDS Human other chr22:45121157 chr22:45121159 nonsynonymous SNV 0.971 3 23 hm5C_associated_SNPs_84512 0 0 1 0 1 PRR5;PRR5-ARHGAP8 chr22:45121172 5'GT 45121172 Upstream 14bp
chr3 9726588 9726588 1 + C T rs183134138 9726586 + 9726566 9726606 41 TTCCAGGATGGGCTCATCCACACGTCCCTGAAGCCCACTGA TTCCAGGATGGGCTCATCCACATGTCCCTGAAGCCCACTGA < 41bp 0.716407458129495 0.451400903665754 0.2170623 0.21364278 prediction 0.432814916258991 Functional Loss - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9726586 chr3:9726588 nonsynonymous SNV 0.884 3 23 hm5C_associated_SNPs_84514 1 0 1 0 2 MTMR14 chr3:9726572 3'AG 9726572 Downstream 17bp
chr3 9726588 9726588 1 + C T rs183134138 9726586 + 9726566 9726606 41 TTCCAGGATGGGCTCATCCACACGTCCCTGAAGCCCACTGA TTCCAGGATGGGCTCATCCACATGTCCCTGAAGCCCACTGA < 41bp 0.716407458129495 0.451400903665754 0.2170623 0.21364278 prediction 0.432814916258991 Functional Loss - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9726586 chr3:9726588 nonsynonymous SNV 0.884 3 23 hm5C_associated_SNPs_84514 1 0 1 0 2 MTMR14 chr3:9726648 5'GT 9726648 Upstream 61bp
chr3 66436641 66436641 1 - G A UCEC 66436644 - 66436624 66436664 41 GGACATCCGGTTTACATGCTCAGCAGCCAGCAGCAGCAGCT GGACATCCGGTTTACATGCTCAGTAGCCAGCAGCAGCAGCT < 41bp 0.716406876320659 0.490398482421017 0.7439934 0.7256173 prediction 0.432813752641318 Functional Loss - LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66436644 chr3:66436641 nonsynonymous SNV 0.977 3 24 hm5C_associated_SNPs_84516 0 0 1 0 1 LRIG1 chr3:66436725 3'AG 66436725 Downstream 85bp
chr19 6828864 6828864 1 + C T COAD 6828861 + 6828841 6828881 41 CACTATGGCCGGCCCAAGATCGACGGGGAACTCAAGATCAC CACTATGGCCGGCCCAAGATCGATGGGGAACTCAAGATCAC < 41bp 0.733202975983812 0.516798484741087 0.8926009 0.71458817 prediction 0.432808982485449 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6828861 chr19:6828864 synonymous SNV . 0 24 hm5C_associated_SNPs_84519 0 0 0 0 2 VAV1 chr19:6828826 3'AG 6828826 Downstream 39bp
chr19 6828864 6828864 1 + C T COAD 6828861 + 6828841 6828881 41 CACTATGGCCGGCCCAAGATCGACGGGGAACTCAAGATCAC CACTATGGCCGGCCCAAGATCGATGGGGAACTCAAGATCAC < 41bp 0.733202975983812 0.516798484741087 0.8926009 0.71458817 prediction 0.432808982485449 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6828861 chr19:6828864 synonymous SNV . 0 24 hm5C_associated_SNPs_84519 0 0 0 0 2 VAV1 chr19:6828911 5'GT 6828911 Upstream 48bp
chr15 34517327 34517327 1 + G A UCEC 34517324 + 34517304 34517344 41 GCAGCTGTTGCCATGACGGCCCAGGGGGGCCTGGTGGCTAA GCAGCTGTTGCCATGACGGCCCAAGGGGGCCTGGTGGCTAA < 41bp 0.776832240314541 0.560430677713537 0.83252734 0.30720228 prediction 0.432803125202007 Functional Loss - EMC4 ENSG00000128463 CDS Human protein_coding chr15:34517324 chr15:34517327 synonymous SNV . 0 24 hm5C_associated_SNPs_84520 0 0 1 0 1 EMC4 chr15:34517401 5'GT 34517401 Upstream 75bp
chr17 40720917 40720917 1 + C T UCEC 40720914 + 40720894 40720934 41 AGTCCTACAAAGACCGGCGGCGGCGCGCACACACTCAGGCT AGTCCTACAAAGACCGGCGGCGGTGCGCACACACTCAGGCT < 41bp 0.721127010147814 0.504732872785914 0.15803331 0.1584495 prediction 0.432788274723799 Functional Loss - MLX ENSG00000108788 CDS Human protein_coding chr17:40720914 chr17:40720917 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_84524 0 0 1 0 2 MLX chr17:40720855 3'AG 40720855 Downstream 63bp
chr17 40720917 40720917 1 + C T UCEC 40720914 + 40720894 40720934 41 AGTCCTACAAAGACCGGCGGCGGCGCGCACACACTCAGGCT AGTCCTACAAAGACCGGCGGCGGTGCGCACACACTCAGGCT < 41bp 0.721127010147814 0.504732872785914 0.15803331 0.1584495 prediction 0.432788274723799 Functional Loss - MLX ENSG00000108788 CDS Human protein_coding chr17:40720914 chr17:40720917 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_84524 0 0 1 0 2 MLX chr17:40720961 5'GT 40720961 Upstream 45bp
chr2 160085346 160085346 1 + G A UCEC 160085343 + 160085323 160085363 41 AGGAATTTGCTTCCAAGGCTCTCGAATTGAAGCCCAAGTCC AGGAATTTGCTTCCAAGGCTCTCAAATTGAAGCCCAAGTCC < 41bp 0.716393923596719 0.46865658897691 0.84786105 0.15668792 prediction 0.432787847193438 Functional Loss - TANC1 ENSG00000115183 CDS Human protein_coding chr2:160085343 chr2:160085346 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_84525 0 0 0 0 3 TANC1 chr2:160085307 3'AG 160085307 Downstream 40bp
chr2 160085346 160085346 1 + G A UCEC 160085343 + 160085323 160085363 41 AGGAATTTGCTTCCAAGGCTCTCGAATTGAAGCCCAAGTCC AGGAATTTGCTTCCAAGGCTCTCAAATTGAAGCCCAAGTCC < 41bp 0.716393923596719 0.46865658897691 0.84786105 0.15668792 prediction 0.432787847193438 Functional Loss - TANC1 ENSG00000115183 CDS Human protein_coding chr2:160085343 chr2:160085346 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_84525 0 0 0 0 3 TANC1 chr2:160085407 5'GT 160085407 Upstream 62bp
chr2 160085346 160085346 1 + G A UCEC 160085343 + 160085323 160085363 41 AGGAATTTGCTTCCAAGGCTCTCGAATTGAAGCCCAAGTCC AGGAATTTGCTTCCAAGGCTCTCAAATTGAAGCCCAAGTCC < 41bp 0.716393923596719 0.46865658897691 0.84786105 0.15668792 prediction 0.432787847193438 Functional Loss - TANC1 ENSG00000115183 CDS Human protein_coding chr2:160085343 chr2:160085346 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_84525 0 0 0 0 3 TANC1 chr2:160085412 5'GT 160085412 Upstream 67bp
chr21 44592203 44592203 1 + G A UCEC 44592200 + 44592180 44592220 41 GGACGACCACGGCTACATTTCCCGTGAGTTCCACCGCCGCT GGACGACCACGGCTACATTTCCCATGAGTTCCACCGCCGCT < 41bp 0.716393759019548 0.472142914302247 0.83980095 0.34036958 prediction 0.432787518039095 Functional Loss - CRYAA;LOC102724652 ENSG00000160202 CDS Human protein_coding chr21:44592200 chr21:44592203 nonsynonymous SNV 0.976 5 24 hm5C_associated_SNPs_84526 0 0 0 0 1 CRYAA;LOC102724652 chr21:44592181 3'AG 44592181 Downstream 23bp
chr7 27831685 27831685 1 + C T BLCA 27831683 + 27831663 27831703 41 AGAGGAACAGGTTCAGGCAACTCGGCAAGAAGTTGTCTTTC AGAGGAACAGGTTCAGGCAACTTGGCAAGAAGTTGTCTTTC < 41bp 0.716393183851834 0.424766813202098 0.68855786 0.6865114 prediction 0.432786367703668 Functional Loss - TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27831683 chr7:27831685 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_84527 0 0 1 0 1 TAX1BP1 chr7:27831625 3'AG 27831625 Downstream 61bp
chr7 27831686 27831686 1 + G A STAD 27831683 + 27831663 27831703 41 AGAGGAACAGGTTCAGGCAACTCGGCAAGAAGTTGTCTTTC AGAGGAACAGGTTCAGGCAACTCAGCAAGAAGTTGTCTTTC < 41bp 0.716393183851834 0.479664446776828 0.68855786 0.570613 prediction 0.432786367703668 Functional Loss - TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27831683 chr7:27831686 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_84528 0 0 1 0 1 TAX1BP1 chr7:27831625 3'AG 27831625 Downstream 62bp
chr11 45921711 45921711 1 + C T rs560597368 45921709 + 45921689 45921729 41 CCCCCGCGCGCCGGGCTGCTCTCTGCGGGCGGCGGCGGCGC CCCCCGCGCGCCGGGCTGCTCTTTGCGGGCGGCGGCGGCGC < 41bp 0.804442097773078 0.588049252901094 0.6275863 0.30518553 prediction 0.432785689743967 Functional Loss - MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45921709 chr11:45921711 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_84529 0 0 0 0 1 MAPK8IP1 chr11:45921689 3'AG 45921689 Downstream 23bp
chr1 206647725 206647725 1 + C T UCEC 206647722 + 206647702 206647742 41 TCTTCAACACTACCAGCTACCTGCGGCCCCGCGAGGTGCAA TCTTCAACACTACCAGCTACCTGTGGCCCCGCGAGGTGCAA < 41bp 0.717752457955592 0.501363992988516 0.047626495 0.04077384 prediction 0.432776929934152 Functional Loss - IKBKE ENSG00000143466 CDS Human other chr1:206647722 chr1:206647725 nonsynonymous SNV 0.892 3 24 hm5C_associated_SNPs_84530 0 0 0 0 2 IKBKE chr1:206647674 3'AG 206647674 Downstream 52bp
chr1 206647725 206647725 1 + C T UCEC 206647722 + 206647702 206647742 41 TCTTCAACACTACCAGCTACCTGCGGCCCCGCGAGGTGCAA TCTTCAACACTACCAGCTACCTGTGGCCCCGCGAGGTGCAA < 41bp 0.717752457955592 0.501363992988516 0.047626495 0.04077384 prediction 0.432776929934152 Functional Loss - IKBKE ENSG00000143466 CDS Human other chr1:206647722 chr1:206647725 nonsynonymous SNV 0.892 3 24 hm5C_associated_SNPs_84530 0 0 0 0 2 IKBKE chr1:206647814 5'GT 206647814 Upstream 90bp
chr7 143039091 143039091 1 + G T LUAD 143039088 + 143039068 143039108 41 TGTGATTTGCTTCGAATTAACGGGTCAGATTGCTCACATCC TGTGATTTGCTTCGAATTAACGGTTCAGATTGCTCACATCC < 41bp 0.716385841405009 0.304286289093851 0.50005776 0.042109728 prediction 0.432771682810018 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143039088 chr7:143039091 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_84531 0 0 0 0 1 CLCN1 chr7:143039022 3'AG 143039022 Downstream 70bp
chr15 74771488 74771488 1 + G A rs2099593 74771485 + 74771465 74771505 41 AGAATGACGCCATGGGCCCTCGCGGTGAGTGTTACAGCTCT AGAATGACGCCATGGGCCCTCGCAGTGAGTGTTACAGCTCT < 41bp 0.793409196807141 0.577024583093332 0.56496495 0.33735138 prediction 0.432769227427618 Functional Loss - UBL7-AS1 ENSG00000247240;ENSG00000260103 ncRNA_exonic Human other chr15:74771485 chr15:74771488 . . 0 24 hm5C_associated_SNPs_84532 0 0 1 0 1 UBL7-AS1 chr15:74771401 3'AG 74771401 Downstream 88bp
chr5 170145847 170145847 1 + C T LUAD 170145844 + 170145824 170145864 41 CTCGAGGCCCAGACCAACTTCACCAAGAGGGAGCTGCAGGT CTCGAGGCCCAGACCAACTTCACTAAGAGGGAGCTGCAGGT < 41bp 0.760162809839034 0.543779411235181 0.25411868 0.29291236 prediction 0.432766797207705 Functional Loss - KCNIP1 ENSG00000182132 CDS Human other chr5:170145844 chr5:170145847 synonymous SNV . 0 24 hm5C_associated_SNPs_84533 0 0 0 0 2 KCNIP1 chr5:170145762 3'AG 170145762 Downstream 86bp
chr5 170145847 170145847 1 + C T LUAD 170145844 + 170145824 170145864 41 CTCGAGGCCCAGACCAACTTCACCAAGAGGGAGCTGCAGGT CTCGAGGCCCAGACCAACTTCACTAAGAGGGAGCTGCAGGT < 41bp 0.760162809839034 0.543779411235181 0.25411868 0.29291236 prediction 0.432766797207705 Functional Loss - KCNIP1 ENSG00000182132 CDS Human protein_coding chr5:170145844 chr5:170145847 synonymous SNV . 0 24 hm5C_associated_SNPs_84533 0 0 0 0 2 KCNIP1 chr5:170145886 5'GT 170145886 Upstream 40bp
chr19 36036644 36036644 1 + G A BLCA 36036641 + 36036621 36036661 41 CGGGACCGGGCGGCCGGCATCATGACCCTGTTTCACTTCGG CGGGACCGGGCGGCCGGCATCATAACCCTGTTTCACTTCGG < 41bp 0.728656552436089 0.512274287353123 0.44623193 0.3400955 prediction 0.432764530165932 Functional Loss - TMEM147 ENSG00000105677 CDS Human protein_coding chr19:36036641 chr19:36036644 nonsynonymous SNV 0.984 2 24 hm5C_associated_SNPs_84534 0 0 1 0 1 TMEM147 chr19:36036718 5'GT 36036718 Upstream 75bp
chr2 108622592 108622592 1 + G T UCEC 108622589 + 108622569 108622609 41 ATGCTCAAGTGCTGTCCTTCCTGGCAGCTTTCGGGTGCCTG ATGCTCAAGTGCTGTCCTTCCTGTCAGCTTTCGGGTGCCTG < 41bp 0.716375445465613 0.323256361710673 0.17449462 0.01623407 prediction 0.432750890931226 Functional Loss - SLC5A7 ENSG00000115665 CDS Human protein_coding chr2:108622589 chr2:108622592 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_84539 0 0 0 0 2 SLC5A7 chr2:108622505 3'AG 108622505 Downstream 88bp
chr2 108622592 108622592 1 + G T UCEC 108622589 + 108622569 108622609 41 ATGCTCAAGTGCTGTCCTTCCTGGCAGCTTTCGGGTGCCTG ATGCTCAAGTGCTGTCCTTCCTGTCAGCTTTCGGGTGCCTG < 41bp 0.716375445465613 0.323256361710673 0.17449462 0.01623407 prediction 0.432750890931226 Functional Loss - SLC5A7 ENSG00000115665 CDS Human protein_coding chr2:108622589 chr2:108622592 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_84539 0 0 0 0 2 SLC5A7 chr2:108622658 5'GT 108622658 Upstream 67bp
chr7 36338647 36338647 1 + G A UCEC 36338644 + 36338624 36338664 41 GCTGTGGTGAGAGAAGGCCTCACGAACCCTTGGATTCCGGA GCTGTGGTGAGAGAAGGCCTCACAAACCCTTGGATTCCGGA < 41bp 0.71637512379261 0.485434831912964 0.5101959 0.17868721 prediction 0.432750247585221 Functional Loss - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36338644 chr7:36338647 synonymous SNV . 0 24 hm5C_associated_SNPs_84540 0 0 0 0 1 EEPD1 chr7:36338616 3'AG 36338616 Downstream 32bp
chr9 140777221 140777221 1 + G T LUSC 140777219 + 140777199 140777239 41 GACACGGAGCCCTATTTCATCGGGATCTTTTGCTTCGAGGC GACACGGAGCCCTATTTCATCGTGATCTTTTGCTTCGAGGC < 41bp 0.716371308061634 0.378404712258272 0.9262761 0.6372969 prediction 0.432742616123268 Functional Loss - CACNA1B ENSG00000148408 CDS Human protein_coding chr9:140777219 chr9:140777221 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_84541 0 0 0 0 1 CACNA1B chr9:140777196 3'AG 140777196 Downstream 26bp
chr17 12883544 12883544 1 + C T LUAD 12883541 + 12883521 12883561 41 CAGACCAGAGTCCTCACACCCTCCGGAAAGGTATGGCCCTG CAGACCAGAGTCCTCACACCCTCTGGAAAGGTATGGCCCTG < 41bp 0.716367656545975 0.498389194236524 0.20692682 0.18176797 prediction 0.43273531309195 Functional Loss - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12883541 chr17:12883544 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_84543 0 0 0 0 1 ARHGAP44 chr17:12883550 5'GT 12883550 Upstream 7bp
chr17 6348675 6348675 1 + T C LGG 6348674 + 6348654 6348694 41 CAGAGCCAGGTCAGCAGGGCCTCCAGGCTGCAGCTCGCTCA CAGAGCCAGGTCAGCAGGGCCCCCAGGCTGCAGCTCGCTCA < 41bp 0.851934407279803 0.635567636924862 0.93155247 0.28558993 prediction 0.432733540709883 Functional Loss - PIMREG ENSG00000129195 CDS Human protein_coding chr17:6348674 chr17:6348675 nonsynonymous SNV 0.989 3 22 hm5C_associated_SNPs_84544 0 0 1 0 1 PIMREG chr17:6348724 5'GT 6348724 Upstream 50bp
chr2 114355147 114355147 1 + G T SARC 114355145 + 114355125 114355165 41 ATCCGCCAAGCTGGGGGCATCGGCAAGGCCAAGCTGCGCAG ATCCGCCAAGCTGGGGGCATCGTCAAGGCCAAGCTGCGCAG < 41bp 0.90663065027321 0.690265347939227 0.74460346 0.31932682 prediction 0.432730604667967 Functional Loss - WASH2P ENSG00000146556 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:114355145 chr2:114355147 . . 0 23 hm5C_associated_SNPs_84545 0 0 0 0 1 WASH2P chr2:114355063 3'AG 114355063 Downstream 85bp
chr12 75875825 75875825 1 + G A COAD 75875822 + 75875802 75875842 41 CCAGGACTATGACTTCAAGACTCGGATATGCAAAAAAGTCT CCAGGACTATGACTTCAAGACTCAGATATGCAAAAAAGTCT < 41bp 0.716364073117979 0.490373601233306 0.08827683 0.04355508 prediction 0.432728146235958 Functional Loss - GLIPR1 ENSG00000139278 CDS Human protein_coding chr12:75875822 chr12:75875825 nonsynonymous SNV 0.012 0 24 hm5C_associated_SNPs_84546 0 0 0 0 1 GLIPR1 chr12:75875859 5'GT 75875859 Upstream 35bp
chr12 75875824 75875824 1 + C T UCEC 75875822 + 75875802 75875842 41 CCAGGACTATGACTTCAAGACTCGGATATGCAAAAAAGTCT CCAGGACTATGACTTCAAGACTTGGATATGCAAAAAAGTCT < 41bp 0.716364073117979 0.44142643694164 0.08827683 0.046497494 prediction 0.432728146235958 Functional Loss - GLIPR1 ENSG00000139278 CDS Human protein_coding chr12:75875822 chr12:75875824 nonsynonymous SNV 0.010 3 23 hm5C_associated_SNPs_84547 0 0 0 0 1 GLIPR1 chr12:75875859 5'GT 75875859 Upstream 36bp
chr10 70509354 70509354 1 + C T SKCM 70509352 + 70509332 70509372 41 GAAACGTTCCCGGGAAAGATCTCCACGAAGAGAGCGAGAGC GAAACGTTCCCGGGAAAGATCTTCACGAAGAGAGCGAGAGC < 41bp 0.86590872603955 0.649550717624615 0.940981 0.050764382 prediction 0.432716016829871 Functional Loss - CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70509352 chr10:70509354 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_84549 0 0 1 0 2 CCAR1 chr10:70509281 3'AG 70509281 Downstream 74bp
chr10 70509354 70509354 1 + C T SKCM 70509352 + 70509332 70509372 41 GAAACGTTCCCGGGAAAGATCTCCACGAAGAGAGCGAGAGC GAAACGTTCCCGGGAAAGATCTTCACGAAGAGAGCGAGAGC < 41bp 0.86590872603955 0.649550717624615 0.940981 0.050764382 prediction 0.432716016829871 Functional Loss - CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70509352 chr10:70509354 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_84549 0 0 1 0 2 CCAR1 chr10:70509442 5'GT 70509442 Upstream 89bp
chr11 12281376 12281376 1 + G A rs2270515 12281373 + 12281353 12281393 41 ATGGCAAGAGCAGGAAGCCCCTCGGAGAGACACTCCCACCG ATGGCAAGAGCAGGAAGCCCCTCAGAGAGACACTCCCACCG < 41bp 0.793397829233274 0.577040094726302 0.48904604 0.3651877 prediction 0.432715469013945 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12281373 chr11:12281376 nonsynonymous SNV 0.144 0 24 hm5C_associated_SNPs_84550 0 0 0 0 2 MICAL2 chr11:12281342 3'AG 12281342 Downstream 35bp
chr11 12281376 12281376 1 + G A rs2270515 12281373 + 12281353 12281393 41 ATGGCAAGAGCAGGAAGCCCCTCGGAGAGACACTCCCACCG ATGGCAAGAGCAGGAAGCCCCTCAGAGAGACACTCCCACCG < 41bp 0.793397829233274 0.577040094726302 0.48904604 0.3651877 prediction 0.432715469013945 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12281373 chr11:12281376 nonsynonymous SNV 0.144 0 24 hm5C_associated_SNPs_84550 0 0 0 0 2 MICAL2 chr11:12281444 5'GT 12281444 Upstream 69bp
chr2 198557842 198557842 1 + G A rs4618045 198557839 + 198557819 198557859 41 TAAGCAAGCCTGGGCAATGGCGGGCGCCCCTCCCCCAGCCT TAAGCAAGCCTGGGCAATGGCGGACGCCCCTCCCCCAGCCT < 41bp 0.813246398234755 0.596890278671481 0.927809 0.87537545 prediction 0.432712239126546 Functional Loss - RFTN2;MARS2 ENSG00000222017 CDS Human antisense chr2:198557839 chr2:198557842 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_84551 0 0 0 0 1 RFTN2;MARS2 chr2:198557940 5'GT 198557940 Upstream 99bp
chr11 113264443 113264443 1 + C T SKCM 113264441 + 113264421 113264461 41 ACAGCATTAAGCCGCCTCTGCTCCACCTGGACCTCAAGCCG ACAGCATTAAGCCGCCTCTGCTTCACCTGGACCTCAAGCCG < 41bp 0.716355242563777 0.422038423652592 0.39384148 0.16751897 prediction 0.432710485127554 Functional Loss - ANKK1 ENSG00000170209 CDS Human protein_coding chr11:113264441 chr11:113264443 synonymous SNV . 0 23 hm5C_associated_SNPs_84553 0 0 0 0 1 ANKK1 chr11:113264497 5'GT 113264497 Upstream 55bp
chr14 105395257 105395257 1 + G A LUAD 105395254 + 105395234 105395274 41 CCTGACATCGGGGTCAACGACTCGTCTTCCCAGCTGGTGCG CCTGACATCGGGGTCAACGACTCATCTTCCCAGCTGGTGCG < 41bp 0.716352754756282 0.460995643903342 0.05251673 0.035276145 prediction 0.432705509512565 Functional Loss - PLD4 ENSG00000166428 CDS Human protein_coding chr14:105395254 chr14:105395257 synonymous SNV . 0 24 hm5C_associated_SNPs_84555 0 0 0 0 1 PLD4 chr14:105395269 5'GT 105395269 Upstream 13bp
chrX 10096179 10096179 1 + C T UCEC 10096177 + 10096157 10096197 41 TCCGCCCGGGACCCTGCACACACCATCTCCATCTCCGGCAA TCCGCCCGGGACCCTGCACACATCATCTCCATCTCCGGCAA < 41bp 0.851674091930638 0.635324130401433 0.014452755 0.011840075 prediction 0.432699923058411 Functional Loss - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10096177 chrX:10096179 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_84556 0 0 0 0 1 WWC3 chrX:10096201 5'GT 10096201 Upstream 23bp
chr9 126132440 126132440 1 + G A GBM 126132437 + 126132417 126132457 41 GCCTGTCGGATCCCTGCCTGCACGGCGGAACCTGCAGTGAC GCCTGTCGGATCCCTGCCTGCACAGCGGAACCTGCAGTGAC < 41bp 0.716347950476396 0.470043808677222 0.74122334 0.3461793 prediction 0.432695900952793 Functional Loss - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126132437 chr9:126132440 nonsynonymous SNV 0.487 4 24 hm5C_associated_SNPs_84558 0 0 0 0 1 CRB2 chr9:126132387 3'AG 126132387 Downstream 54bp
chr6 43607788 43607788 1 + G T LUSC 43607785 + 43607765 43607805 41 AGATGCTGAAGAAGAAACCTCGGGCCACCACTGAGGTGAGC AGATGCTGAAGAAGAAACCTCGGTCCACCACTGAGGTGAGC < 41bp 0.716339168070388 0.313638236915133 0.589748 0.20882854 prediction 0.432678336140777 Functional Loss - MAD2L1BP ENSG00000124688 CDS Human protein_coding chr6:43607785 chr6:43607788 nonsynonymous SNV 0.011 0 24 hm5C_associated_SNPs_84562 0 0 1 0 1 MAD2L1BP chr6:43607758 3'AG 43607758 Downstream 31bp
chrX 153001904 153001904 1 + C T BRCA 153001902 + 153001882 153001922 41 GCCCAGGGAGCTAGAGGACGCTCAGGCGGGGTCTGGGACCA GCCCAGGGAGCTAGAGGACGCTTAGGCGGGGTCTGGGACCA < 41bp 0.716339162781884 0.453333356791645 0.34050512 0.5159747 prediction 0.432678325563768 Functional Loss - ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153001902 chrX:153001904 stopgain 0.524 0 23 hm5C_associated_SNPs_84563 0 0 1 0 1 ABCD1 chrX:153001967 5'GT 153001967 Upstream 64bp
chr11 85593595 85593595 1 + C T rs150724013 85593592 + 85593572 85593612 41 AAGAACAGATTTGGCACATACGGCATCTACTAAAGGAACTG AAGAACAGATTTGGCACATACGGTATCTACTAAAGGAACTG < 41bp 0.73444455388871 0.518105881395871 0.04364693 0.049460113 prediction 0.432677344985677 Functional Loss - CCDC83 ENSG00000150676 CDS Human protein_coding chr11:85593592 chr11:85593595 nonsynonymous SNV 0.755 1 24 hm5C_associated_SNPs_84564 0 0 0 0 1 CCDC83 chr11:85593556 3'AG 85593556 Downstream 40bp
chr2 3660908 3660908 1 + G C LUSC 3660907 + 3660887 3660927 41 GACTTCTTCCACAGGGGATGCGGGAGAGAAGGGAGACAAAG GACTTCTTCCACAGGGGATGCCGGAGAGAAGGGAGACAAAG < 41bp 0.821187918942035 0.604850225874576 0.8177873 0.48802757 prediction 0.432675386134919 Functional Loss - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3660907 chr2:3660908 nonsynonymous SNV 0.950 1 22 hm5C_associated_SNPs_84565 0 0 0 0 2 COLEC11 chr2:3660901 3'AG 3660901 Downstream 8bp
chr2 3660908 3660908 1 + G C LUSC 3660907 + 3660887 3660927 41 GACTTCTTCCACAGGGGATGCGGGAGAGAAGGGAGACAAAG GACTTCTTCCACAGGGGATGCCGGAGAGAAGGGAGACAAAG < 41bp 0.821187918942035 0.604850225874576 0.8177873 0.48802757 prediction 0.432675386134919 Functional Loss - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3660907 chr2:3660908 nonsynonymous SNV 0.950 1 22 hm5C_associated_SNPs_84565 0 0 0 0 2 COLEC11 chr2:3660972 5'GT 3660972 Upstream 65bp
chr19 10394882 10394882 1 + T C LUSC 10394881 + 10394861 10394901 41 ACCTATGGCAACGACTCCTTCTCGGCCAAGGCCTCAGTCAG ACCTATGGCAACGACTCCTTCCCGGCCAAGGCCTCAGTCAG < 41bp 0.817045375797846 0.600710138324493 0.12363848 0.13312334 prediction 0.432670474946705 Functional Loss - ICAM1 ENSG00000090339 CDS Human protein_coding chr19:10394881 chr19:10394882 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_84566 0 0 1 0 1 ICAM1 chr19:10394805 3'AG 10394805 Downstream 78bp
chr2 74166053 74166053 1 + G A rs62641680 74166050 + 74166030 74166070 41 ATTGCAGCTGTGGGAAAGTCCACGTTTGTGAAGTTACTCAC ATTGCAGCTGTGGGAAAGTCCACATTTGTGAAGTTACTCAC < 41bp 0.783949798656963 0.567616653683008 0.0935407 0.09764138 prediction 0.432666289947911 Functional Loss - DGUOK ENSG00000114956 CDS Human protein_coding chr2:74166050 chr2:74166053 synonymous SNV . 0 24 hm5C_associated_SNPs_84567 2 0 0 0 2 DGUOK chr2:74166037 3'AG 74166037 Downstream 17bp
chr2 74166053 74166053 1 + G A rs62641680 74166050 + 74166030 74166070 41 ATTGCAGCTGTGGGAAAGTCCACGTTTGTGAAGTTACTCAC ATTGCAGCTGTGGGAAAGTCCACATTTGTGAAGTTACTCAC < 41bp 0.783949798656963 0.567616653683008 0.0935407 0.09764138 prediction 0.432666289947911 Functional Loss - DGUOK ENSG00000114956 CDS Human protein_coding chr2:74166050 chr2:74166053 synonymous SNV . 0 24 hm5C_associated_SNPs_84567 2 0 0 0 2 DGUOK chr2:74166149 5'GT 74166149 Upstream 97bp
chr2 109411032 109411032 1 + G A UCEC 109411029 + 109411009 109411049 41 TAATACGACCTCATCGAGACCTCGGACTGAGTGTTGTAGTG TAATACGACCTCATCGAGACCTCAGACTGAGTGTTGTAGTG < 41bp 0.769224949265744 0.552893327603416 0.06757495 0.02173677 prediction 0.432663243324656 Functional Loss - CCDC138 ENSG00000163006 CDS Human protein_coding chr2:109411029 chr2:109411032 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_84569 0 0 1 0 1 CCDC138 chr2:109410996 3'AG 109410996 Downstream 37bp
chrX 130222677 130222677 1 + C T SKCM 130222674 + 130222654 130222694 41 TGAGGAAGGAGCGGGTAACCCTCCCATTCCGGAGCAAGACC TGAGGAAGGAGCGGGTAACCCTCTCATTCCGGAGCAAGACC < 41bp 0.744090014960518 0.527760139721797 0.7716582 0.3719069 prediction 0.432659750477441 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130222674 chrX:130222677 nonsynonymous SNV 0.013 0 24 hm5C_associated_SNPs_84571 0 0 0 0 1 ARHGAP36 chrX:130222602 3'AG 130222602 Downstream 76bp
chr18 48593467 48593467 1 + G T BLCA 48593464 + 48593444 48593484 41 GTCAGGTGCCTTAGTGACCACGCGGTCTTTGTACAGAGTTA GTCAGGTGCCTTAGTGACCACGCTGTCTTTGTACAGAGTTA < 41bp 0.716329096160188 0.329232642521067 0.42100486 0.15109476 prediction 0.432658192320377 Functional Loss - SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48593464 chr18:48593467 synonymous SNV . 0 24 hm5C_associated_SNPs_84572 0 0 1 0 2 SMAD4 chr18:48593389 3'AG 48593389 Downstream 79bp
chr18 48593467 48593467 1 + G T BLCA 48593464 + 48593444 48593484 41 GTCAGGTGCCTTAGTGACCACGCGGTCTTTGTACAGAGTTA GTCAGGTGCCTTAGTGACCACGCTGTCTTTGTACAGAGTTA < 41bp 0.716329096160188 0.329232642521067 0.42100486 0.15109476 prediction 0.432658192320377 Functional Loss - SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48593464 chr18:48593467 synonymous SNV . 0 24 hm5C_associated_SNPs_84572 0 0 1 0 2 SMAD4 chr18:48593557 5'GT 48593557 Upstream 91bp
chr18 48593466 48593466 1 + C T LUAD 48593464 + 48593444 48593484 41 GTCAGGTGCCTTAGTGACCACGCGGTCTTTGTACAGAGTTA GTCAGGTGCCTTAGTGACCACGTGGTCTTTGTACAGAGTTA < 41bp 0.716329096160188 0.443551504022006 0.42100486 0.5363836 prediction 0.432658192320377 Functional Loss - SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48593464 chr18:48593466 nonsynonymous SNV 0.658 5 23 hm5C_associated_SNPs_84573 1 0 1 0 2 SMAD4 chr18:48593389 3'AG 48593389 Downstream 78bp
chr18 48593466 48593466 1 + C T LUAD 48593464 + 48593444 48593484 41 GTCAGGTGCCTTAGTGACCACGCGGTCTTTGTACAGAGTTA GTCAGGTGCCTTAGTGACCACGTGGTCTTTGTACAGAGTTA < 41bp 0.716329096160188 0.443551504022006 0.42100486 0.5363836 prediction 0.432658192320377 Functional Loss - SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48593464 chr18:48593466 nonsynonymous SNV 0.658 5 23 hm5C_associated_SNPs_84573 1 0 1 0 2 SMAD4 chr18:48593557 5'GT 48593557 Upstream 92bp
chr11 64138849 64138849 1 + C T SKCM 64138847 + 64138827 64138867 41 AAGCAGAAGCTGCGGAGCGCCACCGCCTCCCGCCGGGGCTC AAGCAGAAGCTGCGGAGCGCCATCGCCTCCCGCCGGGGCTC < 41bp 0.790132180436352 0.573805078222959 0.2970862 0.16948092 prediction 0.432654204426786 Functional Loss - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64138847 chr11:64138849 nonsynonymous SNV 0.227 0 23 hm5C_associated_SNPs_84574 0 0 0 0 1 RPS6KA4 chr11:64138755 3'AG 64138755 Downstream 95bp
chr3 193355804 193355804 1 + C T UCEC 193355802 + 193355782 193355822 41 GTTGGAAATGATTGCCCAAGCTCGAATATTCCCAAGAGGAT GTTGGAAATGATTGCCCAAGCTTGAATATTCCCAAGAGGAT < 41bp 0.865462120408082 0.649135498510499 0.064825624 0.055112243 prediction 0.432653243795167 Functional Loss - OPA1 ENSG00000198836 CDS Human protein_coding chr3:193355802 chr3:193355804 stopgain 0.954 1 23 hm5C_associated_SNPs_84575 0 0 1 0 2 OPA1 chr3:193355741 3'AG 193355741 Downstream 64bp
chr3 193355804 193355804 1 + C T UCEC 193355802 + 193355782 193355822 41 GTTGGAAATGATTGCCCAAGCTCGAATATTCCCAAGAGGAT GTTGGAAATGATTGCCCAAGCTTGAATATTCCCAAGAGGAT < 41bp 0.865462120408082 0.649135498510499 0.064825624 0.055112243 prediction 0.432653243795167 Functional Loss - OPA1 ENSG00000198836 CDS Human protein_coding chr3:193355802 chr3:193355804 stopgain 0.954 1 23 hm5C_associated_SNPs_84575 0 0 1 0 2 OPA1 chr3:193355854 5'GT 193355854 Upstream 51bp
chr22 35812362 35812362 1 + G A UCEC 35812359 + 35812339 35812379 41 AAGATGACCGTGTGGCAATCCACGAAGCCATGGAGCAGCAG AAGATGACCGTGTGGCAATCCACAAAGCCATGGAGCAGCAG < 41bp 0.800097763346964 0.583781678300668 0.2544539 0.28183407 prediction 0.432632170092592 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35812359 chr22:35812362 nonsynonymous SNV 0.892 4 24 hm5C_associated_SNPs_84579 0 0 1 3 2 MCM5 chr22:35812332 3'AG 35812332 Downstream 31bp
chr22 35812362 35812362 1 + G A UCEC 35812359 + 35812339 35812379 41 AAGATGACCGTGTGGCAATCCACGAAGCCATGGAGCAGCAG AAGATGACCGTGTGGCAATCCACAAAGCCATGGAGCAGCAG < 41bp 0.800097763346964 0.583781678300668 0.2544539 0.28183407 prediction 0.432632170092592 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35812359 chr22:35812362 nonsynonymous SNV 0.892 4 24 hm5C_associated_SNPs_84579 0 0 1 3 2 MCM5 chr22:35812397 5'GT 35812397 Upstream 36bp
chr9 137623932 137623932 1 + G T HNSC 137623929 + 137623909 137623949 41 ACCCCCAGATTGGAGGACCTCGGGGCGAGAAAGGCCAAAAG ACCCCCAGATTGGAGGACCTCGGTGCGAGAAAGGCCAAAAG < 41bp 0.716313231567128 0.335797021969242 0.92730284 0.4134422 prediction 0.432626463134255 Functional Loss - COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137623929 chr9:137623932 nonsynonymous SNV 0.856 4 24 hm5C_associated_SNPs_84582 0 0 1 0 2 COL5A1 chr9:137623917 3'AG 137623917 Downstream 16bp
chr9 137623932 137623932 1 + G T HNSC 137623929 + 137623909 137623949 41 ACCCCCAGATTGGAGGACCTCGGGGCGAGAAAGGCCAAAAG ACCCCCAGATTGGAGGACCTCGGTGCGAGAAAGGCCAAAAG < 41bp 0.716313231567128 0.335797021969242 0.92730284 0.4134422 prediction 0.432626463134255 Functional Loss - COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137623929 chr9:137623932 nonsynonymous SNV 0.856 4 24 hm5C_associated_SNPs_84582 0 0 1 0 2 COL5A1 chr9:137623973 5'GT 137623973 Upstream 42bp
chr16 66613774 66613774 1 + T C LUSC 66613773 + 66613753 66613793 41 GTTCTGGCTCTTGGGGCACGCTGAGATCAAGATTCGGAGTT GTTCTGGCTCTTGGGGCACGCCGAGATCAAGATTCGGAGTT < 41bp 0.734975592505689 0.518663687800168 0.2396273 0.31743568 prediction 0.432623809411041 Functional Loss - CMTM2 ENSG00000140932 CDS Human protein_coding chr16:66613773 chr16:66613774 synonymous SNV . 0 22 hm5C_associated_SNPs_84583 0 0 0 0 1 CMTM2 chr16:66613795 5'GT 66613795 Upstream 22bp
chr9 78804038 78804038 1 + C T PAAD 78804035 + 78804015 78804055 41 GGAGCTGATGGGTGCATTAACTGCACAGAGGGCTACTTCAT GGAGCTGATGGGTGCATTAACTGTACAGAGGGCTACTTCAT < 41bp 0.717822611130062 0.501512552107934 0.39388472 0.27179503 prediction 0.432620118044256 Functional Loss - PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78804035 chr9:78804038 synonymous SNV . 0 24 hm5C_associated_SNPs_84584 0 0 0 0 1 PCSK5 chr9:78804010 3'AG 78804010 Downstream 29bp
chr2 33500090 33500090 1 + C T COAD 33500087 + 33500067 33500107 41 TCCCAGGGCCGCTGTGAAAACACCGAGGGAAGTTTCTTGTG TCCCAGGGCCGCTGTGAAAACACTGAGGGAAGTTTCTTGTG < 41bp 0.726372402286819 0.510072363486147 0.17006385 0.20155609 prediction 0.432600077601344 Functional Loss - LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33500087 chr2:33500090 synonymous SNV . 0 24 hm5C_associated_SNPs_84588 0 0 0 0 2 LTBP1 chr2:33500032 3'AG 33500032 Downstream 59bp
chr2 33500090 33500090 1 + C T COAD 33500087 + 33500067 33500107 41 TCCCAGGGCCGCTGTGAAAACACCGAGGGAAGTTTCTTGTG TCCCAGGGCCGCTGTGAAAACACTGAGGGAAGTTTCTTGTG < 41bp 0.726372402286819 0.510072363486147 0.17006385 0.20155609 prediction 0.432600077601344 Functional Loss - LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33500087 chr2:33500090 synonymous SNV . 0 24 hm5C_associated_SNPs_84588 0 0 0 0 2 LTBP1 chr2:33500157 5'GT 33500157 Upstream 68bp
chr11 67075131 67075131 1 + C T rs57238619 67075128 + 67075108 67075148 41 CACTACCAGGAGAGACTGAACTCCGAACAGAGCTGCCTCAA CACTACCAGGAGAGACTGAACTCTGAACAGAGCTGCCTCAA < 41bp 0.722543194130037 0.506244134495548 0.6281306 0.3992193 prediction 0.432598119268979 Functional Loss - SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075128 chr11:67075131 synonymous SNV . 0 24 hm5C_associated_SNPs_84589 0 0 1 0 1 SSH3 chr11:67075208 5'GT 67075208 Upstream 78bp
chr9 130420676 130420676 1 + C T UCEC 130420674 + 130420654 130420694 41 TTGTGGAAGATATCAATAAGCGCAGAGAGCCGCTCCCCAGC TTGTGGAAGATATCAATAAGCGTAGAGAGCCGCTCCCCAGC < 41bp 0.716298405747538 0.437565976264161 0.24956322 0.23729312 prediction 0.432596811495075 Functional Loss - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130420674 chr9:130420676 synonymous SNV . 0 23 hm5C_associated_SNPs_84591 0 0 1 0 2 STXBP1 chr9:130420654 3'AG 130420654 Downstream 23bp
chr9 130420676 130420676 1 + C T UCEC 130420674 + 130420654 130420694 41 TTGTGGAAGATATCAATAAGCGCAGAGAGCCGCTCCCCAGC TTGTGGAAGATATCAATAAGCGTAGAGAGCCGCTCCCCAGC < 41bp 0.716298405747538 0.437565976264161 0.24956322 0.23729312 prediction 0.432596811495075 Functional Loss - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130420674 chr9:130420676 synonymous SNV . 0 23 hm5C_associated_SNPs_84591 0 0 1 0 2 STXBP1 chr9:130420730 5'GT 130420730 Upstream 55bp
chr17 7287072 7287072 1 + G A CESC 7287069 + 7287049 7287089 41 CTCCGGGTAGGTCCCGAAGGCCCGATGGGCACAGAACTGGG CTCCGGGTAGGTCCCGAAGGCCCAATGGGCACAGAACTGGG < 41bp 0.800288408401178 0.583991345493962 0.10881141 0.12362555 prediction 0.432594125814431 Functional Loss - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7287069 chr17:7287072 synonymous SNV . 0 24 hm5C_associated_SNPs_84594 0 0 0 0 1 TNK1 chr17:7287028 3'AG 7287028 Downstream 45bp
chr19 49979749 49979749 1 + G C BLCA 49979748 + 49979728 49979768 41 ATGGAGCGGCTCAAGACTGTCGCTGGGTCCAAGATGCAAGG ATGGAGCGGCTCAAGACTGTCCCTGGGTCCAAGATGCAAGG < 41bp 0.716294953827896 0.393824362168617 0.11651486 0.11168188 prediction 0.432589907655792 Functional Loss - FLT3LG ENSG00000090554 CDS Human protein_coding chr19:49979748 chr19:49979749 nonsynonymous SNV 0.829 2 22 hm5C_associated_SNPs_84596 0 0 1 0 2 FLT3LG chr19:49979680 3'AG 49979680 Downstream 70bp
chr19 49979749 49979749 1 + G C BLCA 49979748 + 49979728 49979768 41 ATGGAGCGGCTCAAGACTGTCGCTGGGTCCAAGATGCAAGG ATGGAGCGGCTCAAGACTGTCCCTGGGTCCAAGATGCAAGG < 41bp 0.716294953827896 0.393824362168617 0.11651486 0.11168188 prediction 0.432589907655792 Functional Loss - FLT3LG ENSG00000090554 CDS Human protein_coding chr19:49979748 chr19:49979749 nonsynonymous SNV 0.829 2 22 hm5C_associated_SNPs_84596 0 0 1 0 2 FLT3LG chr19:49979823 5'GT 49979823 Upstream 75bp
chr3 54930880 54930880 1 + C T SKCM 54930878 + 54930858 54930898 41 ATTCCAGGGAGCTTCGTCTACTCGATCCCATTCAGCACTGG ATTCCAGGGAGCTTCGTCTACTTGATCCCATTCAGCACTGG < 41bp 0.716294842805313 0.497526545476897 0.17140391 0.06806773 prediction 0.432589685610626 Functional Loss - CACNA2D3 ENSG00000157445 CDS Human protein_coding chr3:54930878 chr3:54930880 nonsynonymous SNV 0.894 3 23 hm5C_associated_SNPs_84597 0 0 0 0 1 CACNA2D3 chr3:54930897 5'GT 54930897 Upstream 18bp
chr5 1201921 1201921 1 + C T rs146382764 1201919 + 1201899 1201939 41 GCCTGGGCTTCTGCGTGGGCCTCGGCAACGTGTGGCGCTTC GCCTGGGCTTCTGCGTGGGCCTTGGCAACGTGTGGCGCTTC < 41bp 0.71628972875907 0.461005777773763 0.68350273 0.44692323 prediction 0.43257945751814 Functional Loss - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1201919 chr5:1201921 synonymous SNV . 0 23 hm5C_associated_SNPs_84599 0 0 0 0 1 SLC6A19 chr5:1201967 5'GT 1201967 Upstream 47bp
chr5 139216555 139216555 1 + G T UCEC 139216552 + 139216532 139216572 41 TACAAGCACGGCGTCCTGACCCGGAAGACTCACGCTGACAT TACAAGCACGGCGTCCTGACCCGTAAGACTCACGCTGACAT < 41bp 0.716289480112074 0.317105503504767 0.77909803 0.2514221 prediction 0.432578960224147 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139216552 chr5:139216555 synonymous SNV . 0 24 hm5C_associated_SNPs_84600 0 0 0 0 1 PSD2 chr5:139216586 5'GT 139216586 Upstream 32bp
chr17 1628060 1628060 1 + G A rs148119667 1628057 + 1628037 1628077 41 CAGCCTCTGCCCCGCCGCGCCCGGAGCGCAGGACCCGCGGA CAGCCTCTGCCCCGCCGCGCCCGAAGCGCAGGACCCGCGGA < 41bp 0.716289087203042 0.483164820501276 0.7513934 0.43690246 prediction 0.432578174406085 Functional Loss - WDR81 ENSG00000167716 UTR5 Human protein_coding chr17:1628057 chr17:1628060 . . 0 24 hm5C_associated_SNPs_84601 0 0 1 0 1 WDR81 chr17:1628080 5'GT 1628080 Upstream 21bp
chr8 134225328 134225328 1 + G A rs73711810 134225325 + 134225305 134225345 41 GCTGCCATCTGTGACCCCCACCGGGGCCTCTACTGTGACTA GCTGCCATCTGTGACCCCCACCGAGGCCTCTACTGTGACTA < 41bp 0.796185382514066 0.579896613135845 0.91016847 0.4736628 prediction 0.432577538756443 Functional Loss - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134225325 chr8:134225328 synonymous SNV . 0 24 hm5C_associated_SNPs_84602 0 0 0 0 2 WISP1 chr8:134225363 5'GT 134225363 Upstream 36bp
chr8 134225328 134225328 1 + G A rs73711810 134225325 + 134225305 134225345 41 GCTGCCATCTGTGACCCCCACCGGGGCCTCTACTGTGACTA GCTGCCATCTGTGACCCCCACCGAGGCCTCTACTGTGACTA < 41bp 0.796185382514066 0.579896613135845 0.91016847 0.4736628 prediction 0.432577538756443 Functional Loss - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134225325 chr8:134225328 synonymous SNV . 0 24 hm5C_associated_SNPs_84602 0 0 0 0 2 WISP1 chr8:134225386 5'GT 134225386 Upstream 59bp
chr7 141443499 141443499 1 + T C rs78598246 141443498 + 141443478 141443518 41 GGGATAGTGAAGTTTACCAACTGGGTGAGTACAAAAGACTG GGGATAGTGAAGTTTACCAACCGGGTGAGTACAAAAGACTG < 41bp 0.780485330589833 0.564199617209865 0.25982362 0.38036588 prediction 0.432571426759937 Functional Loss - SSBP1 ENSG00000106028 CDS Human protein_coding chr7:141443498 chr7:141443499 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_84603 0 0 1 0 1 SSBP1 chr7:141443501 5'GT 141443501 Upstream 3bp
chr8 104053095 104053095 1 + G T LUAD 104053093 + 104053073 104053113 41 GTTCTGGCTTATATCTGCTCCTGGGGAGAAAACCTGTCAGC GTTCTGGCTTATATCTGCTCCTTGGGAGAAAACCTGTCAGC < 41bp 0.716284345849035 0.385210967286069 0.7584276 0.1653271 prediction 0.43256869169807 Functional Loss - ATP6V1C1 ENSG00000155097 CDS Human protein_coding chr8:104053093 chr8:104053095 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_84607 0 0 1 0 1 ATP6V1C1 chr8:104053026 3'AG 104053026 Downstream 70bp
chr15 43690300 43690300 1 + T C rs999025 43690299 + 43690279 43690319 41 TCCCCGGGAAGCCCCTGCATCTGGCTGGGCAGCCCTAGGTC TCCCCGGGAAGCCCCTGCATCCGGCTGGGCAGCCCTAGGTC < 41bp 0.820633542851538 0.604349466070921 0.28508958 0.33785182 prediction 0.432568153561236 Functional Loss - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43690299 chr15:43690300 synonymous SNV . 0 22 hm5C_associated_SNPs_84608 0 0 1 0 3 TUBGCP4 chr15:43690236 3'AG 43690236 Downstream 65bp
chr15 43690300 43690300 1 + T C rs999025 43690299 + 43690279 43690319 41 TCCCCGGGAAGCCCCTGCATCTGGCTGGGCAGCCCTAGGTC TCCCCGGGAAGCCCCTGCATCCGGCTGGGCAGCCCTAGGTC < 41bp 0.820633542851538 0.604349466070921 0.28508958 0.33785182 prediction 0.432568153561236 Functional Loss - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43690299 chr15:43690300 synonymous SNV . 0 22 hm5C_associated_SNPs_84608 0 0 1 0 3 TUBGCP4 chr15:43690239 3'AG 43690239 Downstream 62bp
chr15 43690300 43690300 1 + T C rs999025 43690299 + 43690279 43690319 41 TCCCCGGGAAGCCCCTGCATCTGGCTGGGCAGCCCTAGGTC TCCCCGGGAAGCCCCTGCATCCGGCTGGGCAGCCCTAGGTC < 41bp 0.820633542851538 0.604349466070921 0.28508958 0.33785182 prediction 0.432568153561236 Functional Loss - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43690299 chr15:43690300 synonymous SNV . 0 22 hm5C_associated_SNPs_84608 0 0 1 0 3 TUBGCP4 chr15:43690377 5'GT 43690377 Upstream 78bp
chr17 8170198 8170198 1 + G A COAD 8170195 + 8170175 8170215 41 CTGGAGCTGGGCCACACAGGCGAGGCCGGGCCCCACGCCAT CTGGAGCTGGGCCACACAGGCGAAGCCGGGCCCCACGCCAT < 41bp 0.716281235944424 0.457135219969078 0.82843286 0.42806098 prediction 0.432562471888848 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8170195 chr17:8170198 synonymous SNV . 0 24 hm5C_associated_SNPs_84609 0 0 1 0 1 PFAS chr17:8170216 5'GT 8170216 Upstream 19bp
chr19 36352880 36352880 1 + G A rs34201832 36352877 + 36352857 36352897 41 AGGAGCTTTAACTGCAGTGCCCGGAACCGGCTGGGCGAGGG AGGAGCTTTAACTGCAGTGCCCGAAACCGGCTGGGCGAGGG < 41bp 0.71627831573815 0.482661892178635 0.634005 0.31333634 prediction 0.432556631476299 Functional Loss - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36352877 chr19:36352880 synonymous SNV . 0 24 hm5C_associated_SNPs_84610 0 0 0 0 1 KIRREL2 chr19:36352926 5'GT 36352926 Upstream 47bp
chr1 17603133 17603133 1 + G T HNSC 17603129 + 17603109 17603149 41 TGGGCCATGTGGATGAGTTTCTGAGCTTTGTCCCTGCCCCC TGGGCCATGTGGATGAGTTTCTGATCTTTGTCCCTGCCCCC < 41bp 0.728426571164589 0.512149200147111 0.54570144 0.32789975 prediction 0.432554742034955 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17603129 chr1:17603133 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_84611 0 0 0 0 1 PADI3 chr1:17603158 5'GT 17603158 Upstream 26bp
chr20 16729556 16729556 1 + G A OV 16729553 + 16729533 16729573 41 CTCAAGAAGATTATAATGCCCCGGACTGTAGATTCATTAAC CTCAAGAAGATTATAATGCCCCGAACTGTAGATTCATTAAC < 41bp 0.716276887139538 0.493580666886243 0.05176094 0.033396482 prediction 0.432553774279076 Functional Loss - OTOR ENSG00000125879 CDS Human protein_coding chr20:16729553 chr20:16729556 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_84612 0 0 0 0 1 OTOR chr20:16729512 3'AG 16729512 Downstream 45bp
chr1 9778813 9778813 1 + C T HNSC 9778811 + 9778791 9778831 41 CTGTGCAAGACGGTGTCCAGCTCGGAGGTGAGCGTGTGCTC CTGTGCAAGACGGTGTCCAGCTTGGAGGTGAGCGTGTGCTC < 41bp 0.843814287201769 0.6275382019114 0.059042692 0.051905245 prediction 0.432552170580739 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9778811 chr1:9778813 nonsynonymous SNV 0.831 1 23 hm5C_associated_SNPs_84614 0 0 0 0 1 PIK3CD chr1:9778752 3'AG 9778752 Downstream 62bp
chr11 119057265 119057265 1 + C T COAD 119057262 + 119057242 119057282 41 AGAGTTTTGGCTTCCACCTGCAGCAGGAGCTGGGCAGGGCT AGAGTTTTGGCTTCCACCTGCAGTAGGAGCTGGGCAGGGCT < 41bp 0.71627279543971 0.498792373115667 0.35014296 0.35137656 prediction 0.43254559087942 Functional Loss - PDZD3 ENSG00000172367 CDS Human protein_coding chr11:119057262 chr11:119057265 stopgain 0.913 0 24 hm5C_associated_SNPs_84618 0 0 0 0 1 PDZD3 chr11:119057188 3'AG 119057188 Downstream 78bp
chr1 175053005 175053005 1 + G T UCEC 175053003 + 175052983 175053023 41 GCTGCGATATGGCCCCATGACAGGACAGGAGGTAGCTGAGG GCTGCGATATGGCCCCATGACATGACAGGAGGTAGCTGAGG < 41bp 0.905849264828569 0.689583690389153 0.34959054 0.114112854 prediction 0.432531148878831 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175053003 chr1:175053005 stopgain 0.443 1 23 hm5C_associated_SNPs_84620 0 0 0 0 1 TNN chr1:175053071 5'GT 175053071 Upstream 67bp
chr19 41916713 41916713 1 + G C CESC 41916709 + 41916689 41916729 41 GGCCAGATCATCAACCCCAGCGAGGACCCCCACGTGAGAGG GGCCAGATCATCAACCCCAGCGAGCACCCCCACGTGAGAGG < 41bp 0.716255625964943 0.418046976546512 0.37301964 0.21154073 prediction 0.432511251929885 Functional Loss - BCKDHA ENSG00000248098;ENSG00000255730 CDS Human other chr19:41916709 chr19:41916713 nonsynonymous SNV 0.984 4 25 hm5C_associated_SNPs_84626 0 0 1 0 1 BCKDHA chr19:41916721 5'GT 41916721 Upstream 9bp
chr19 41916712 41916712 1 + G A UCEC 41916709 + 41916689 41916729 41 GGCCAGATCATCAACCCCAGCGAGGACCCCCACGTGAGAGG GGCCAGATCATCAACCCCAGCGAAGACCCCCACGTGAGAGG < 41bp 0.716255625964943 0.461130877100175 0.37301964 0.20138028 prediction 0.432511251929885 Functional Loss - BCKDHA ENSG00000248098;ENSG00000255730 CDS Human other chr19:41916709 chr19:41916712 synonymous SNV . 0 24 hm5C_associated_SNPs_84627 0 0 1 0 1 BCKDHA chr19:41916721 5'GT 41916721 Upstream 10bp
chr9 104071658 104071658 1 + G T STAD 104071655 + 104071635 104071675 41 AAACAATGGGAACATTTGTACTGGGGACCTGGAAGTGATAG AAACAATGGGAACATTTGTACTGTGGACCTGGAAGTGATAG < 41bp 0.716250316188401 0.331596622233049 0.07870737 0.023678094 prediction 0.432500632376802 Functional Loss - PLPPR1 ENSG00000148123 CDS Human protein_coding chr9:104071655 chr9:104071658 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_84630 0 0 0 0 1 PLPPR1 chr9:104071743 5'GT 104071743 Upstream 86bp
chr7 74524847 74524847 1 + G A UCEC 74524844 + 74524824 74524864 41 TGACATTCCTCGTGTCTGCCCTCGAATCCATGGTGAGACAG TGACATTCCTCGTGTCTGCCCTCAAATCCATGGTGAGACAG < 41bp 0.792539338765189 0.576293596712725 0.83492017 0.2587049 prediction 0.432491484104928 Functional Loss - GTF2IRD2;GTF2IRD2B ENSG00000174428 CDS Human protein_coding chr7:74524844 chr7:74524847 nonsynonymous SNV 0.973 2 24 hm5C_associated_SNPs_84635 0 0 0 0 1 GTF2IRD2;GTF2IRD2B chr7:74524855 5'GT 74524855 Upstream 9bp
chr2 241631316 241631316 1 + G A rs531753848 241631313 + 241631293 241631333 41 GTGTCCTGCAGGCACAGCTCCTCGGGGGGCCCAGGCCGATG GTGTCCTGCAGGCACAGCTCCTCAGGGGGCCCAGGCCGATG < 41bp 0.71624447929443 0.478683475167828 0.35743672 0.10188165 prediction 0.432488958588861 Functional Loss - AQP12A ENSG00000184945 UTR5 Human protein_coding chr2:241631313 chr2:241631316 . . 0 24 hm5C_associated_SNPs_84636 0 0 0 0 1 AQP12A chr2:241631337 5'GT 241631337 Upstream 22bp
chr11 1475811 1475811 1 + G A SKCM 1475808 + 1475788 1475828 41 GACAAACCTCTGAGCTCCATCAAGGCTGACATCGTGCACGC GACAAACCTCTGAGCTCCATCAAAGCTGACATCGTGCACGC < 41bp 0.787423647237211 0.571179609375853 0.90739715 0.49158606 prediction 0.432488075722714 Functional Loss - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1475808 chr11:1475811 synonymous SNV . 0 24 hm5C_associated_SNPs_84637 0 0 0 0 2 BRSK2 chr11:1475715 3'AG 1475715 Downstream 97bp
chr11 1475811 1475811 1 + G A SKCM 1475808 + 1475788 1475828 41 GACAAACCTCTGAGCTCCATCAAGGCTGACATCGTGCACGC GACAAACCTCTGAGCTCCATCAAAGCTGACATCGTGCACGC < 41bp 0.787423647237211 0.571179609375853 0.90739715 0.49158606 prediction 0.432488075722714 Functional Loss - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1475808 chr11:1475811 synonymous SNV . 0 24 hm5C_associated_SNPs_84637 0 0 0 0 2 BRSK2 chr11:1475838 5'GT 1475838 Upstream 28bp
chr7 99917416 99917416 1 + G A rs112622797 99917413 + 99917393 99917433 41 CGCTGCAGGGCTTGGGTTTCCCCGGAGGAGTTGGAGGAGGT CGCTGCAGGGCTTGGGTTTCCCCAGAGGAGTTGGAGGAGGT < 41bp 0.783030502748398 0.566787498007592 0.52670145 0.376947 prediction 0.432486009481611 Functional Loss - SPDYE3 ENSG00000214300 CDS Human protein_coding chr7:99917413 chr7:99917416 synonymous SNV . 0 24 hm5C_associated_SNPs_84638 0 0 0 0 1 SPDYE3 chr7:99917431 5'GT 99917431 Upstream 16bp
chr16 57850192 57850192 1 + T C rs918743 57850191 + 57850171 57850211 41 CTTGCCCCAAACCCAGAAGCCTGAGGAAGTAAGGAAGTGCG CTTGCCCCAAACCCAGAAGCCCGAGGAAGTAAGGAAGTGCG < 41bp 0.731164087225765 0.514924183773379 0.32862878 0.48004285 prediction 0.432479806904772 Functional Loss - LOC388282 ENSG00000187185 CDS Human lincRNA chr16:57850191 chr16:57850192 synonymous SNV . 0 22 hm5C_associated_SNPs_84640 0 0 0 0 1 LOC388282 chr16:57850124 3'AG 57850124 Downstream 69bp
chr1 162352997 162352997 1 + C T LUAD 162352995 + 162352975 162353015 41 AGTCCTGCAAGAAACATTTCCTCGGCTGGATCCTCCACCTC AGTCCTGCAAGAAACATTTCCTTGGCTGGATCCTCCACCTC < 41bp 0.71623578768985 0.455497694648254 0.15518162 0.076854736 prediction 0.432471575379699 Functional Loss - C1orf226 ENSG00000239887 CDS Human protein_coding chr1:162352995 chr1:162352997 nonsynonymous SNV 0.536 3 23 hm5C_associated_SNPs_84641 0 0 1 0 1 C1orf226 chr1:162352972 3'AG 162352972 Downstream 26bp
chr16 84459396 84459396 1 + G A rs202197722 84459393 + 84459373 84459413 41 AAACAACTCCTGAGTATGTTCACGATCGGGGTCAGGTAAGA AAACAACTCCTGAGTATGTTCACAATCGGGGTCAGGTAAGA < 41bp 0.79637649352918 0.580141951235407 0.030528933 0.020644993 prediction 0.432469084587546 Functional Loss - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84459393 chr16:84459396 synonymous SNV . 0 24 hm5C_associated_SNPs_84642 0 0 0 0 2 ATP2C2 chr16:84459341 3'AG 84459341 Downstream 56bp
chr16 84459396 84459396 1 + G A rs202197722 84459393 + 84459373 84459413 41 AAACAACTCCTGAGTATGTTCACGATCGGGGTCAGGTAAGA AAACAACTCCTGAGTATGTTCACAATCGGGGTCAGGTAAGA < 41bp 0.79637649352918 0.580141951235407 0.030528933 0.020644993 prediction 0.432469084587546 Functional Loss - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84459393 chr16:84459396 synonymous SNV . 0 24 hm5C_associated_SNPs_84642 0 0 0 0 2 ATP2C2 chr16:84459407 5'GT 84459407 Upstream 12bp
chr1 28863387 28863387 1 + G T LUAD 28863385 + 28863365 28863405 41 CTCGGTGGCTTGTGGGGCCTCTGTGGGGTATGCTGTGACCA CTCGGTGGCTTGTGGGGCCTCTTTGGGGTATGCTGTGACCA < 41bp 0.716228666359925 0.362846071910048 0.33861816 0.34016815 prediction 0.43245733271985 Functional Loss - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28863385 chr1:28863387 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_84646 0 0 1 0 1 RCC1 chr1:28863411 5'GT 28863411 Upstream 25bp
chrX 49093692 49093692 1 + C T LGG 49093690 + 49093670 49093710 41 GCTGCCTCTTGCCATGTCTGCCCGGTTCCGCCTGGCCATGA GCTGCCTCTTGCCATGTCTGCCTGGTTCCGCCTGGCCATGA < 41bp 0.716228393681584 0.462570163471804 0.21096778 0.32887912 prediction 0.432456787363168 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49093690 chrX:49093692 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_84647 0 0 1 0 1 CCDC22 chrX:49093730 5'GT 49093730 Upstream 39bp
chr4 81967703 81967703 1 + G A rs137896169 81967700 + 81967680 81967720 41 AATTGCGCCAGGAGATACCTCAAGGTAGACTTTGCAGATAT AATTGCGCCAGGAGATACCTCAAAGTAGACTTTGCAGATAT < 41bp 0.77942316390695 0.563196547248431 0.7763711 0.39816856 prediction 0.432453233317037 Functional Loss - BMP3 ENSG00000152785 CDS Human protein_coding chr4:81967700 chr4:81967703 synonymous SNV . 0 24 hm5C_associated_SNPs_84650 0 0 0 0 1 BMP3 chr4:81967802 5'GT 81967802 Upstream 100bp
chrX 100086572 100086572 1 + G T LUAD 100086569 + 100086549 100086589 41 CTGCGAATGTCCCAACCCCTCGAGGCTTGTTAGGAGATGCT CTGCGAATGTCCCAACCCCTCGATGCTTGTTAGGAGATGCT < 41bp 0.716226356199454 0.310163557303263 0.91297626 0.30509955 prediction 0.432452712398908 Functional Loss - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100086569 chrX:100086572 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_84651 0 0 1 0 2 CSTF2 chrX:100086504 3'AG 100086504 Downstream 69bp
chrX 100086572 100086572 1 + G T LUAD 100086569 + 100086549 100086589 41 CTGCGAATGTCCCAACCCCTCGAGGCTTGTTAGGAGATGCT CTGCGAATGTCCCAACCCCTCGATGCTTGTTAGGAGATGCT < 41bp 0.716226356199454 0.310163557303263 0.91297626 0.30509955 prediction 0.432452712398908 Functional Loss - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100086569 chrX:100086572 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_84651 0 0 1 0 2 CSTF2 chrX:100086645 5'GT 100086645 Upstream 74bp
chr19 17993010 17993010 1 + C T rs117626343 17993008 + 17992988 17993028 41 TGGCAGCCCTGTCCTCACTGCTCGGAGGAGGTGTCCTTCAG TGGCAGCCCTGTCCTCACTGCTTGGAGGAGGTGTCCTTCAG < 41bp 0.716225770441228 0.432150279680833 0.42834562 0.2961588 prediction 0.432451540882456 Functional Loss - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17993008 chr19:17993010 synonymous SNV . 0 23 hm5C_associated_SNPs_84652 1 0 0 0 2 SLC5A5 chr19:17992958 3'AG 17992958 Downstream 53bp
chr19 17993010 17993010 1 + C T rs117626343 17993008 + 17992988 17993028 41 TGGCAGCCCTGTCCTCACTGCTCGGAGGAGGTGTCCTTCAG TGGCAGCCCTGTCCTCACTGCTTGGAGGAGGTGTCCTTCAG < 41bp 0.716225770441228 0.432150279680833 0.42834562 0.2961588 prediction 0.432451540882456 Functional Loss - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17993008 chr19:17993010 synonymous SNV . 0 23 hm5C_associated_SNPs_84652 1 0 0 0 2 SLC5A5 chr19:17993028 5'GT 17993028 Upstream 19bp
chr7 130022008 130022008 1 + G T PAAD 130022005 + 130021985 130022025 41 CCGCACCTTGTCAGCAAGATCCAGATTGGCAACACCTATGA CCGCACCTTGTCAGCAAGATCCATATTGGCAACACCTATGA < 41bp 0.716225004619769 0.316308680002353 0.20314938 0.17231476 prediction 0.432450009239538 Functional Loss - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130022005 chr7:130022008 nonsynonymous SNV 0.716 0 24 hm5C_associated_SNPs_84654 0 0 0 0 2 CPA1 chr7:130021949 3'AG 130021949 Downstream 60bp
chr7 130022008 130022008 1 + G T PAAD 130022005 + 130021985 130022025 41 CCGCACCTTGTCAGCAAGATCCAGATTGGCAACACCTATGA CCGCACCTTGTCAGCAAGATCCATATTGGCAACACCTATGA < 41bp 0.716225004619769 0.316308680002353 0.20314938 0.17231476 prediction 0.432450009239538 Functional Loss - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130022005 chr7:130022008 nonsynonymous SNV 0.716 0 24 hm5C_associated_SNPs_84654 0 0 0 0 2 CPA1 chr7:130022050 5'GT 130022050 Upstream 43bp
chr1 151502562 151502562 1 + C T COAD 151502560 + 151502540 151502580 41 TGGTGGGGAAGCGGTGGAGGCACGACTACGGGACAAGCTGC TGGTGGGGAAGCGGTGGAGGCATGACTACGGGACAAGCTGC < 41bp 0.84491237875759 0.628691266931428 0.5040747 0.2886937 prediction 0.432442223652323 Functional Loss - CGN ENSG00000143375 CDS Human protein_coding chr1:151502560 chr1:151502562 stopgain 0.671 1 23 hm5C_associated_SNPs_84655 0 0 0 0 1 CGN chr1:151502591 5'GT 151502591 Upstream 30bp
chr3 142503615 142503615 1 + C T CESC 142503612 + 142503592 142503632 41 TTGGACAGATGTCGGGTTACCGACGCAAGCCCACCTGTAAG TTGGACAGATGTCGGGTTACCGATGCAAGCCCACCTGTAAG < 41bp 0.716218854055076 0.498983244994213 0.33949435 0.31670013 prediction 0.432437708110153 Functional Loss - TRPC1 ENSG00000144935 CDS Human protein_coding chr3:142503612 chr3:142503615 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_84657 0 0 1 0 1 TRPC1 chr3:142503546 3'AG 142503546 Downstream 70bp
chr1 28598891 28598891 1 + C T LUAD 28598888 + 28598868 28598908 41 CTGAGTGGCTGCTGGGCCTCCACCGGGCCCCCGAGAAGCTG CTGAGTGGCTGCTGGGCCTCCACTGGGCCCCCGAGAAGCTG < 41bp 0.736908079403719 0.520691320840167 0.16432601 0.07246071 prediction 0.432433517127103 Functional Loss - SESN2 ENSG00000130766 CDS Human protein_coding chr1:28598888 chr1:28598891 nonsynonymous SNV 0.789 1 24 hm5C_associated_SNPs_84658 0 0 1 0 2 SESN2 chr1:28598795 3'AG 28598795 Downstream 97bp
chr1 28598891 28598891 1 + C T LUAD 28598888 + 28598868 28598908 41 CTGAGTGGCTGCTGGGCCTCCACCGGGCCCCCGAGAAGCTG CTGAGTGGCTGCTGGGCCTCCACTGGGCCCCCGAGAAGCTG < 41bp 0.736908079403719 0.520691320840167 0.16432601 0.07246071 prediction 0.432433517127103 Functional Loss - SESN2 ENSG00000130766 CDS Human protein_coding chr1:28598888 chr1:28598891 nonsynonymous SNV 0.789 1 24 hm5C_associated_SNPs_84658 0 0 1 0 2 SESN2 chr1:28598977 5'GT 28598977 Upstream 87bp
chr2 172821917 172821917 1 + C T LGG 172821915 + 172821895 172821935 41 CCACCTGGATTTTGCACAAACACGAATGATTTCCTTTCTTT CCACCTGGATTTTGCACAAACATGAATGATTTCCTTTCTTT < 41bp 0.759189502600425 0.542974797099083 0.047747612 0.052594334 prediction 0.432429411002685 Functional Loss - HAT1 ENSG00000128708 CDS Human protein_coding chr2:172821915 chr2:172821917 stopgain 0.994 2 23 hm5C_associated_SNPs_84660 0 0 1 0 1 HAT1 chr2:172821859 3'AG 172821859 Downstream 59bp
chr17 7534132 7534132 1 + G T HNSC 7534130 + 7534110 7534150 41 GAGATCCAACTGCACAATCACTGGGCCCAGCTTACGGTGGG GAGATCCAACTGCACAATCACTTGGCCCAGCTTACGGTGGG < 41bp 0.874741762948738 0.658538310492513 0.88992476 0.35669944 prediction 0.432406904912448 Functional Loss - SHBG ENSG00000129214 CDS Human protein_coding chr17:7534130 chr17:7534132 nonsynonymous SNV 0.120 0 23 hm5C_associated_SNPs_84665 0 0 0 0 1 SHBG chr17:7534187 5'GT 7534187 Upstream 56bp
chr16 20432688 20432688 1 + G T LUAD 20432685 + 20432665 20432705 41 CCCAAGATGGTCGAGCACTCCCAGAGCAGCTACGGACTGGG CCCAAGATGGTCGAGCACTCCCATAGCAGCTACGGACTGGG < 41bp 0.716203121443141 0.310066049044502 0.25955176 0.14074835 prediction 0.432406242886283 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20432685 chr16:20432688 nonsynonymous SNV 0.885 0 24 hm5C_associated_SNPs_84666 0 0 0 0 1 ACSM5 chr16:20432723 5'GT 20432723 Upstream 36bp
chr1 36552376 36552376 1 + G T UCEC 36552374 + 36552354 36552394 41 ATGGAGACACTAGAGATCGACAGAGGCTGTCTCTCTCTCAA ATGGAGACACTAGAGATCGACATAGGCTGTCTCTCTCTCAA < 41bp 0.716201933685392 0.351151323063244 0.93556756 0.9074266 prediction 0.432403867370784 Functional Loss - TEKT2 ENSG00000092850 CDS Human protein_coding chr1:36552374 chr1:36552376 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_84667 0 0 0 0 2 TEKT2 chr1:36552305 3'AG 36552305 Downstream 72bp
chr1 36552376 36552376 1 + G T UCEC 36552374 + 36552354 36552394 41 ATGGAGACACTAGAGATCGACAGAGGCTGTCTCTCTCTCAA ATGGAGACACTAGAGATCGACATAGGCTGTCTCTCTCTCAA < 41bp 0.716201933685392 0.351151323063244 0.93556756 0.9074266 prediction 0.432403867370784 Functional Loss - TEKT2 ENSG00000092850 CDS Human protein_coding chr1:36552374 chr1:36552376 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_84667 0 0 0 0 2 TEKT2 chr1:36552448 5'GT 36552448 Upstream 73bp
chrX 115574877 115574877 1 + G T SARC 115574875 + 115574855 115574895 41 ATCATCCAAATGAATAAAAGCTGGGTAGACATCAACAATTT ATCATCCAAATGAATAAAAGCTTGGTAGACATCAACAATTT < 41bp 0.716198823465719 0.380914381313841 0.096248776 0.05097726 prediction 0.432397646931438 Functional Loss - SLC6A14 ENSG00000087916 CDS Human other chrX:115574875 chrX:115574877 nonsynonymous SNV 0.994 0 23 hm5C_associated_SNPs_84669 0 0 0 0 2 SLC6A14 chrX:115574811 3'AG 115574811 Downstream 67bp
chrX 115574877 115574877 1 + G T SARC 115574875 + 115574855 115574895 41 ATCATCCAAATGAATAAAAGCTGGGTAGACATCAACAATTT ATCATCCAAATGAATAAAAGCTTGGTAGACATCAACAATTT < 41bp 0.716198823465719 0.380914381313841 0.096248776 0.05097726 prediction 0.432397646931438 Functional Loss - SLC6A14 ENSG00000087916 CDS Human other chrX:115574875 chrX:115574877 nonsynonymous SNV 0.994 0 23 hm5C_associated_SNPs_84669 0 0 0 0 2 SLC6A14 chrX:115574958 5'GT 115574958 Upstream 82bp
chr2 187618694 187618694 1 + G T UCEC 187618691 + 187618671 187618711 41 AATCATGGTCGGGGAATGGTCAAGGAACATAACAATCATTT AATCATGGTCGGGGAATGGTCAATGAACATAACAATCATTT < 41bp 0.716192942182512 0.339249741044137 0.36367238 0.074711055 prediction 0.432385884365023 Functional Loss - FAM171B ENSG00000144369 CDS Human protein_coding chr2:187618691 chr2:187618694 nonsynonymous SNV 0.954 4 24 hm5C_associated_SNPs_84674 0 0 1 0 2 FAM171B chr2:187618660 3'AG 187618660 Downstream 35bp
chr2 187618694 187618694 1 + G T UCEC 187618691 + 187618671 187618711 41 AATCATGGTCGGGGAATGGTCAAGGAACATAACAATCATTT AATCATGGTCGGGGAATGGTCAATGAACATAACAATCATTT < 41bp 0.716192942182512 0.339249741044137 0.36367238 0.074711055 prediction 0.432385884365023 Functional Loss - FAM171B ENSG00000144369 CDS Human protein_coding chr2:187618691 chr2:187618694 nonsynonymous SNV 0.954 4 24 hm5C_associated_SNPs_84674 0 0 1 0 2 FAM171B chr2:187618776 5'GT 187618776 Upstream 83bp
chr17 7344858 7344858 1 + G A CESC 7344855 + 7344835 7344875 41 GTTTCTACCTCCAGGCGAATCCCGACGGAAGCATCCAGGGC GTTTCTACCTCCAGGCGAATCCCAACGGAAGCATCCAGGGC < 41bp 0.810834658572258 0.59464572980462 0.7756232 0.5604799 prediction 0.432377857535275 Functional Loss - FGF11 ENSG00000161958 CDS Human processed_transcript chr17:7344855 chr17:7344858 nonsynonymous SNV 0.719 1 24 hm5C_associated_SNPs_84675 0 0 0 1 3 FGF11 chr17:7344770 3'AG 7344770 Downstream 89bp
chr17 7344858 7344858 1 + G A CESC 7344855 + 7344835 7344875 41 GTTTCTACCTCCAGGCGAATCCCGACGGAAGCATCCAGGGC GTTTCTACCTCCAGGCGAATCCCAACGGAAGCATCCAGGGC < 41bp 0.810834658572258 0.59464572980462 0.7756232 0.5604799 prediction 0.432377857535275 Functional Loss - FGF11 ENSG00000161958 CDS Human protein_coding chr17:7344855 chr17:7344858 nonsynonymous SNV 0.719 1 24 hm5C_associated_SNPs_84675 0 0 0 1 3 FGF11 chr17:7344790 3'AG 7344790 Downstream 69bp
chr17 7344858 7344858 1 + G A CESC 7344855 + 7344835 7344875 41 GTTTCTACCTCCAGGCGAATCCCGACGGAAGCATCCAGGGC GTTTCTACCTCCAGGCGAATCCCAACGGAAGCATCCAGGGC < 41bp 0.810834658572258 0.59464572980462 0.7756232 0.5604799 prediction 0.432377857535275 Functional Loss - FGF11 ENSG00000161958 CDS Human protein_coding chr17:7344855 chr17:7344858 nonsynonymous SNV 0.719 1 24 hm5C_associated_SNPs_84675 0 0 0 1 3 FGF11 chr17:7344900 5'GT 7344900 Upstream 43bp
chr20 61869964 61869964 1 + C T SKCM 61869962 + 61869942 61869982 41 GACGCAGCCCCTGTGGCCCCCTCCGGTGAGAGCTGACACCA GACGCAGCCCCTGTGGCCCCCTTCGGTGAGAGCTGACACCA < 41bp 0.716188703734599 0.452612632455212 0.4998502 0.19203335 prediction 0.432377407469199 Functional Loss - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61869962 chr20:61869964 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_84676 0 0 0 0 2 BIRC7 chr20:61869921 3'AG 61869921 Downstream 44bp
chr20 61869964 61869964 1 + C T SKCM 61869962 + 61869942 61869982 41 GACGCAGCCCCTGTGGCCCCCTCCGGTGAGAGCTGACACCA GACGCAGCCCCTGTGGCCCCCTTCGGTGAGAGCTGACACCA < 41bp 0.716188703734599 0.452612632455212 0.4998502 0.19203335 prediction 0.432377407469199 Functional Loss - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61869962 chr20:61869964 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_84676 0 0 0 0 2 BIRC7 chr20:61869966 5'GT 61869966 Upstream 3bp
chr12 57860046 57860046 1 + C T rs7973381 57860044 + 57860024 57860064 41 ACATCAACAGCGAGCACATCCACGGGGAGCGGAAGGAGTTC ACATCAACAGCGAGCACATCCATGGGGAGCGGAAGGAGTTC < 41bp 0.843328445799528 0.627152010141527 0.08385947 0.11182344 prediction 0.432352871316002 Functional Loss - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57860044 chr12:57860046 synonymous SNV . 0 23 hm5C_associated_SNPs_84681 0 0 0 0 1 GLI1 chr12:57860023 3'AG 57860023 Downstream 24bp
chr15 68479948 68479948 1 + G A rs184857997 68479945 + 68479925 68479965 41 GATGATCAAGACCTCCTACACTCGTCTCGGTTTTTCCCGTA GATGATCAAGACCTCCTACACTCATCTCGGTTTTTCCCGTA < 41bp 0.716172928346725 0.482831399335041 0.14125815 0.09833038 prediction 0.432345856693449 Functional Loss - PIAS1 ENSG00000033800 CDS Human protein_coding chr15:68479945 chr15:68479948 synonymous SNV . 0 24 hm5C_associated_SNPs_84683 0 0 1 0 1 PIAS1 chr15:68479880 3'AG 68479880 Downstream 69bp
chr15 68479946 68479946 1 + T C STAD 68479945 + 68479925 68479965 41 GATGATCAAGACCTCCTACACTCGTCTCGGTTTTTCCCGTA GATGATCAAGACCTCCTACACCCGTCTCGGTTTTTCCCGTA < 41bp 0.716172928346725 0.468709966817243 0.14125815 0.10716626 prediction 0.432345856693449 Functional Loss - PIAS1 ENSG00000033800 CDS Human protein_coding chr15:68479945 chr15:68479946 nonsynonymous SNV 0.981 1 22 hm5C_associated_SNPs_84684 0 0 1 0 1 PIAS1 chr15:68479880 3'AG 68479880 Downstream 67bp
chrX 12516856 12516856 1 + G T UCEC 12516854 + 12516834 12516874 41 CGGGAACCTGGGGCTTGAGCCAGGTGCCGCCCTATGGATGG CGGGAACCTGGGGCTTGAGCCATGTGCCGCCCTATGGATGG < 41bp 0.716172744722882 0.381706683795432 0.9241445 0.54041344 prediction 0.432345489445764 Functional Loss - FRMPD4 ENSG00000169933 CDS Human protein_coding chrX:12516854 chrX:12516856 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_84685 0 0 1 0 2 FRMPD4 chrX:12516799 3'AG 12516799 Downstream 58bp
chrX 12516856 12516856 1 + G T UCEC 12516854 + 12516834 12516874 41 CGGGAACCTGGGGCTTGAGCCAGGTGCCGCCCTATGGATGG CGGGAACCTGGGGCTTGAGCCATGTGCCGCCCTATGGATGG < 41bp 0.716172744722882 0.381706683795432 0.9241445 0.54041344 prediction 0.432345489445764 Functional Loss - FRMPD4 ENSG00000169933 CDS Human protein_coding chrX:12516854 chrX:12516856 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_84685 0 0 1 0 2 FRMPD4 chrX:12516915 5'GT 12516915 Upstream 60bp
chr1 154248173 154248173 1 + G T LIHC 154248170 + 154248150 154248190 41 CCTGGGACGTTGGTTCCGGTCCCGGTAGCCTTGTTAACCCT CCTGGGACGTTGGTTCCGGTCCCTGTAGCCTTGTTAACCCT < 41bp 0.716169063690802 0.315944488433881 0.14636475 0.047745645 prediction 0.432338127381603 Functional Loss - HAX1 ENSG00000143575 CDS Human protein_coding chr1:154248170 chr1:154248173 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_84687 0 0 1 0 1 HAX1 chr1:154248092 3'AG 154248092 Downstream 82bp
chr6 144207206 144207206 1 + G T UCEC 144207204 + 144207184 144207224 41 ATATGTAAGAAACTCTTCAACAGAAAGCGTAAACCTTTCAG ATATGTAAGAAACTCTTCAACATAAAGCGTAAACCTTTCAG < 41bp 0.716168528226864 0.381624422168144 0.15974346 0.030318677 prediction 0.432337056453729 Functional Loss - ZC2HC1B ENSG00000118491 CDS Human protein_coding chr6:144207204 chr6:144207206 nonsynonymous SNV 0.983 2 23 hm5C_associated_SNPs_84688 0 0 0 2 2 ZC2HC1B chr6:144207169 3'AG 144207169 Downstream 38bp
chr6 144207206 144207206 1 + G T UCEC 144207204 + 144207184 144207224 41 ATATGTAAGAAACTCTTCAACAGAAAGCGTAAACCTTTCAG ATATGTAAGAAACTCTTCAACATAAAGCGTAAACCTTTCAG < 41bp 0.716168528226864 0.381624422168144 0.15974346 0.030318677 prediction 0.432337056453729 Functional Loss - ZC2HC1B ENSG00000118491 CDS Human protein_coding chr6:144207204 chr6:144207206 nonsynonymous SNV 0.983 2 23 hm5C_associated_SNPs_84688 0 0 0 2 2 ZC2HC1B chr6:144207288 5'GT 144207288 Upstream 83bp
chrX 114536597 114536597 1 + T C UCS 114536596 + 114536576 114536616 41 AGAGTTAGAAGGGACAAATGCTGAAGAAGAAAAGAATAAAA AGAGTTAGAAGGGACAAATGCCGAAGAAGAAAAGAATAAAA < 41bp 0.763013482400694 0.546851306069853 0.08724061 0.10643086 prediction 0.432324352661683 Functional Loss - LUZP4 ENSG00000102021 CDS Human protein_coding chrX:114536596 chrX:114536597 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_84689 0 0 0 0 2 LUZP4 chrX:114536557 3'AG 114536557 Downstream 41bp
chrX 114536597 114536597 1 + T C UCS 114536596 + 114536576 114536616 41 AGAGTTAGAAGGGACAAATGCTGAAGAAGAAAAGAATAAAA AGAGTTAGAAGGGACAAATGCCGAAGAAGAAAAGAATAAAA < 41bp 0.763013482400694 0.546851306069853 0.08724061 0.10643086 prediction 0.432324352661683 Functional Loss - LUZP4 ENSG00000102021 CDS Human protein_coding chrX:114536596 chrX:114536597 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_84689 0 0 0 0 2 LUZP4 chrX:114536688 5'GT 114536688 Upstream 92bp
chr12 9020926 9020926 1 + G A COAD 9020923 + 9020903 9020943 41 ATGTGAGCAACCGACTTCACCTCGATCCTTGACTCTCACTA ATGTGAGCAACCGACTTCACCTCAATCCTTGACTCTCACTA < 41bp 0.716161857245447 0.469820924949335 0.3542434 0.029118001 prediction 0.432323714490893 Functional Loss - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9020923 chr12:9020926 nonsynonymous SNV 0.136 0 24 hm5C_associated_SNPs_84690 0 0 0 1 1 A2ML1 chr12:9020953 5'GT 9020953 Upstream 28bp
chr12 9020925 9020925 1 + C T OV 9020923 + 9020903 9020943 41 ATGTGAGCAACCGACTTCACCTCGATCCTTGACTCTCACTA ATGTGAGCAACCGACTTCACCTTGATCCTTGACTCTCACTA < 41bp 0.716161857245447 0.427405439024837 0.3542434 0.021076024 prediction 0.432323714490893 Functional Loss - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9020923 chr12:9020925 stopgain 0.135 0 23 hm5C_associated_SNPs_84691 0 0 0 1 2 A2ML1 chr12:9020826 3'AG 9020826 Downstream 100bp
chr12 9020925 9020925 1 + C T OV 9020923 + 9020903 9020943 41 ATGTGAGCAACCGACTTCACCTCGATCCTTGACTCTCACTA ATGTGAGCAACCGACTTCACCTTGATCCTTGACTCTCACTA < 41bp 0.716161857245447 0.427405439024837 0.3542434 0.021076024 prediction 0.432323714490893 Functional Loss - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9020923 chr12:9020925 stopgain 0.135 0 23 hm5C_associated_SNPs_84691 0 0 0 1 2 A2ML1 chr12:9020953 5'GT 9020953 Upstream 29bp
chr17 6690670 6690670 1 + C T COAD 6690667 + 6690647 6690687 41 CGAATGAAGAGGACAAGACCCTGCAGGAAATTTACAGGAAG CGAATGAAGAGGACAAGACCCTGTAGGAAATTTACAGGAAG < 41bp 0.739159809916041 0.522998107907667 0.21624485 0.11747238 prediction 0.432323404016748 Functional Loss - FBXO39 ENSG00000177294 CDS Human protein_coding chr17:6690667 chr17:6690670 stopgain 0.975 0 24 hm5C_associated_SNPs_84692 0 0 0 0 1 FBXO39 chr17:6690619 3'AG 6690619 Downstream 52bp
chr8 97342505 97342505 1 + A T LUSC 97342501 + 97342481 97342521 41 ATGCAGAACACTATGGTCACCGAGAAAAGGTATGGAAGGAG ATGCAGAACACTATGGTCACCGAGTAAAGGTATGGAAGGAG < 41bp 0.71615636210879 0.385394201457899 0.43173912 0.3788127 prediction 0.432312724217579 Functional Loss - PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97342501 chr8:97342505 nonsynonymous SNV 0.705 0 25 hm5C_associated_SNPs_84693 0 0 1 0 2 PTDSS1 chr8:97342441 3'AG 97342441 Downstream 65bp
chr8 97342505 97342505 1 + A T LUSC 97342501 + 97342481 97342521 41 ATGCAGAACACTATGGTCACCGAGAAAAGGTATGGAAGGAG ATGCAGAACACTATGGTCACCGAGTAAAGGTATGGAAGGAG < 41bp 0.71615636210879 0.385394201457899 0.43173912 0.3788127 prediction 0.432312724217579 Functional Loss - PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97342501 chr8:97342505 nonsynonymous SNV 0.705 0 25 hm5C_associated_SNPs_84693 0 0 1 0 2 PTDSS1 chr8:97342509 5'GT 97342509 Upstream 5bp
chr15 101152540 101152540 1 + C T STAD 101152538 + 101152518 101152558 41 ATGCTAGAACAAGGCTATTCCCCGAATGGCCGAGATGCGAA ATGCTAGAACAAGGCTATTCCCTGAATGGCCGAGATGCGAA < 41bp 0.869590598450866 0.653439978139022 0.0665825 0.066551715 prediction 0.432301240623689 Functional Loss - ASB7 ENSG00000183475 CDS Human protein_coding chr15:101152538 chr15:101152540 nonsynonymous SNV 0.975 3 23 hm5C_associated_SNPs_84697 0 0 1 0 1 ASB7 chr15:101152632 5'GT 101152632 Upstream 93bp
chr2 95539718 95539718 1 + G C LUAD 95539717 + 95539697 95539737 41 CACCCCGCCCCAGACTGAACCGGGAGCACAAGGAGACCTGC CACCCCGCCCCAGACTGAACCCGGAGCACAAGGAGACCTGC < 41bp 0.89057365287872 0.674429647937837 0.93370324 0.8955933 prediction 0.432288009881766 Functional Loss - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95539717 chr2:95539718 nonsynonymous SNV 0.400 3 22 hm5C_associated_SNPs_84702 0 0 0 0 1 TEKT4 chr2:95539710 3'AG 95539710 Downstream 9bp
chr5 132424230 132424230 1 + C T UCEC 132424228 + 132424208 132424248 41 AAATGCTGATGAAGCTGTCACTCGAGGCTGTGCATTGCAGG AAATGCTGATGAAGCTGTCACTTGAGGCTGTGCATTGCAGG < 41bp 0.716141597457523 0.419544420834572 0.1643303 0.20431083 prediction 0.432283194915045 Functional Loss - HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132424228 chr5:132424230 stopgain 1.000 1 23 hm5C_associated_SNPs_84703 0 0 1 0 1 HSPA4 chr5:132424247 5'GT 132424247 Upstream 18bp
chr13 113333859 113333859 1 + G A COAD 113333856 + 113333836 113333876 41 CCCGTGATGAGCCGCCGATCCGAGCTCAGGCTGCGTCATGG CCCGTGATGAGCCGCCGATCCGAACTCAGGCTGCGTCATGG < 41bp 0.820010110596221 0.603879058869525 0.52629834 0.06994432 prediction 0.432262103453391 Functional Loss - ATP11AUN ENSG00000197595 CDS Human lincRNA chr13:113333856 chr13:113333859 nonsynonymous SNV 0.007 1 24 hm5C_associated_SNPs_84708 0 0 0 0 1 ATP11AUN chr13:113333952 5'GT 113333952 Upstream 94bp
chr1 26507009 26507009 1 + C T SKCM 26507006 + 26506986 26507026 41 AGCTGCCTGGCAAGAACCTGCTCCAGCTCTGCCCCCAAAGC AGCTGCCTGGCAAGAACCTGCTCTAGCTCTGCCCCCAAAGC < 41bp 0.7551393852397 0.53900875188211 0.67336655 0.43858576 prediction 0.432261266715179 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26507006 chr1:26507009 stopgain 1.000 1 24 hm5C_associated_SNPs_84709 0 0 1 0 2 CNKSR1 chr1:26506944 3'AG 26506944 Downstream 66bp
chr1 26507009 26507009 1 + C T SKCM 26507006 + 26506986 26507026 41 AGCTGCCTGGCAAGAACCTGCTCCAGCTCTGCCCCCAAAGC AGCTGCCTGGCAAGAACCTGCTCTAGCTCTGCCCCCAAAGC < 41bp 0.7551393852397 0.53900875188211 0.67336655 0.43858576 prediction 0.432261266715179 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26507006 chr1:26507009 stopgain 1.000 1 24 hm5C_associated_SNPs_84709 0 0 1 0 2 CNKSR1 chr1:26507101 5'GT 26507101 Upstream 93bp
chr18 2890589 2890589 1 + G T STAD 2890587 + 2890567 2890607 41 CCCAGCCAATTCTCAGAGCCCAGGAAGACTTTGTCCCCAAC CCCAGCCAATTCTCAGAGCCCATGAAGACTTTGTCCCCAAC < 41bp 0.71613017 0.366983945057038 0.6739581 0.09880474 prediction 0.43226034 Functional Loss - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2890587 chr18:2890589 nonsynonymous SNV 0.911 0 23 hm5C_associated_SNPs_84710 0 0 0 0 1 EMILIN2 chr18:2890559 3'AG 2890559 Downstream 31bp
chr5 180376261 180376261 1 + C T LGG 180376259 + 180376239 180376279 41 AATTGAGAGACGCCCGGAAACACGCAGGTACCAACGCCTGA AATTGAGAGACGCCCGGAAACATGCAGGTACCAACGCCTGA < 41bp 0.71612665513369 0.465780937049207 0.08787143 0.22051626 prediction 0.432253310267379 Functional Loss - BTNL8 ENSG00000113303 CDS Human protein_coding chr5:180376259 chr5:180376261 nonsynonymous SNV 0.114 1 23 hm5C_associated_SNPs_84714 0 0 0 0 2 BTNL8 chr5:180376239 3'AG 180376239 Downstream 23bp
chr5 180376261 180376261 1 + C T LGG 180376259 + 180376239 180376279 41 AATTGAGAGACGCCCGGAAACACGCAGGTACCAACGCCTGA AATTGAGAGACGCCCGGAAACATGCAGGTACCAACGCCTGA < 41bp 0.71612665513369 0.465780937049207 0.08787143 0.22051626 prediction 0.432253310267379 Functional Loss - BTNL8 ENSG00000113303 CDS Human protein_coding chr5:180376259 chr5:180376261 nonsynonymous SNV 0.114 1 23 hm5C_associated_SNPs_84714 0 0 0 0 2 BTNL8 chr5:180376265 5'GT 180376265 Upstream 5bp
chr5 180376262 180376262 1 + G A LUSC 180376259 + 180376239 180376279 41 AATTGAGAGACGCCCGGAAACACGCAGGTACCAACGCCTGA AATTGAGAGACGCCCGGAAACACACAGGTACCAACGCCTGA < 41bp 0.71612665513369 0.492219498899024 0.08787143 0.12305611 prediction 0.432253310267379 Functional Loss - BTNL8 ENSG00000113303 CDS Human protein_coding chr5:180376259 chr5:180376262 nonsynonymous SNV 0.136 2 24 hm5C_associated_SNPs_84715 0 0 0 0 2 BTNL8 chr5:180376239 3'AG 180376239 Downstream 24bp
chr5 180376262 180376262 1 + G A LUSC 180376259 + 180376239 180376279 41 AATTGAGAGACGCCCGGAAACACGCAGGTACCAACGCCTGA AATTGAGAGACGCCCGGAAACACACAGGTACCAACGCCTGA < 41bp 0.71612665513369 0.492219498899024 0.08787143 0.12305611 prediction 0.432253310267379 Functional Loss - BTNL8 ENSG00000113303 CDS Human protein_coding chr5:180376259 chr5:180376262 nonsynonymous SNV 0.136 2 24 hm5C_associated_SNPs_84715 0 0 0 0 2 BTNL8 chr5:180376265 5'GT 180376265 Upstream 4bp
chr2 103300737 103300737 1 + G A SKCM 103300734 + 103300714 103300754 41 CCTTCCTGCTGCTGTGTTTCCTCGGAAAAAATTGTTTATTA CCTTCCTGCTGCTGTGTTTCCTCAGAAAAAATTGTTTATTA < 41bp 0.772056367643818 0.555930840300648 0.42468202 0.25465035 prediction 0.43225105468634 Functional Loss - SLC9A2 ENSG00000115616 CDS Human protein_coding chr2:103300734 chr2:103300737 nonsynonymous SNV 0.943 3 24 hm5C_associated_SNPs_84716 0 0 0 0 1 SLC9A2 chr2:103300795 5'GT 103300795 Upstream 59bp
chr9 15461795 15461795 1 + G A rs188286813 15461792 + 15461772 15461812 41 ATTGGCTTGGAGATGACAAGCACGAGTTTCTGGTATGTCTA ATTGGCTTGGAGATGACAAGCACAAGTTTCTGGTATGTCTA < 41bp 0.723490023059656 0.507367631410589 0.3256483 0.14312792 prediction 0.432244783298134 Functional Loss - SNAPC3 ENSG00000164975 UTR3 Human protein_coding chr9:15461792 chr9:15461795 . . 0 24 hm5C_associated_SNPs_84718 0 0 1 2 1 SNAPC3 chr9:15461803 5'GT 15461803 Upstream 9bp
chr1 25667009 25667009 1 + C T BRCA 25667007 + 25666987 25667027 41 TTTCTAGAGGGCTTGAGATGCTCAGAATGCATTGACTGGGG TTTCTAGAGGGCTTGAGATGCTTAGAATGCATTGACTGGGG < 41bp 0.716121291870059 0.439984135324711 0.17480847 0.26371384 prediction 0.432242583740118 Functional Loss - TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25667007 chr1:25667009 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_84720 0 0 1 0 2 TMEM50A chr1:25666965 3'AG 25666965 Downstream 45bp
chr1 25667009 25667009 1 + C T BRCA 25667007 + 25666987 25667027 41 TTTCTAGAGGGCTTGAGATGCTCAGAATGCATTGACTGGGG TTTCTAGAGGGCTTGAGATGCTTAGAATGCATTGACTGGGG < 41bp 0.716121291870059 0.439984135324711 0.17480847 0.26371384 prediction 0.432242583740118 Functional Loss - TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25667007 chr1:25667009 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_84720 0 0 1 0 2 TMEM50A chr1:25667070 5'GT 25667070 Upstream 62bp
chr17 48356577 48356577 1 + G A OV 48356574 + 48356554 48356594 41 AGGTGATTCTGAAGCCCAGCCTGGGCCCAACTCCCACAGAG AGGTGATTCTGAAGCCCAGCCTGAGCCCAACTCCCACAGAG < 41bp 0.809225141879501 0.593108676408387 0.53478825 0.1423671 prediction 0.432232930942228 Functional Loss - TMEM92 ENSG00000167105 CDS Human protein_coding chr17:48356574 chr17:48356577 nonsynonymous SNV 0.133 0 24 hm5C_associated_SNPs_84724 0 0 0 0 1 TMEM92 chr17:48356556 3'AG 48356556 Downstream 22bp
chr7 150746502 150746502 1 + C T SKCM 150746500 + 150746480 150746520 41 CCTTGTGGGCCTGAGAACTTCACCACGGTGAGCTGACCTCC CCTTGTGGGCCTGAGAACTTCATCACGGTGAGCTGACCTCC < 41bp 0.838638109134465 0.622522949052189 0.41006693 0.30125135 prediction 0.432230320164553 Functional Loss - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150746500 chr7:150746502 nonsynonymous SNV 0.860 3 23 hm5C_associated_SNPs_84726 0 0 1 0 1 ASIC3 chr7:150746506 5'GT 150746506 Upstream 5bp
chr11 18369434 18369434 1 + G C UCS 18369430 + 18369410 18369450 41 AGCAACATGGATGGAAATTCCGGAGATGCAGACTGCTTTCA AGCAACATGGATGGAAATTCCGGACATGCAGACTGCTTTCA < 41bp 0.856860239158844 0.640746464891812 0.89582735 0.40650105 prediction 0.432227548534063 Functional Loss - GTF2H1 ENSG00000110768 CDS Human protein_coding chr11:18369430 chr11:18369434 nonsynonymous SNV 0.964 3 25 hm5C_associated_SNPs_84728 0 0 0 0 1 GTF2H1 chr11:18369379 3'AG 18369379 Downstream 56bp
chr19 20228668 20228668 1 + G A UCEC 20228665 + 20228645 20228685 41 CTTCCAAAAAGTGATAGTGACAAGATATGAAAAACGTGAAT CTTCCAAAAAGTGATAGTGACAAAATATGAAAAACGTGAAT < 41bp 0.734226564266811 0.518116106376103 0.2560163 0.21745291 prediction 0.432220915781415 Functional Loss - ZNF90 ENSG00000213988 CDS Human protein_coding chr19:20228665 chr19:20228668 nonsynonymous SNV 0.047 0 24 hm5C_associated_SNPs_84730 0 0 0 0 1 ZNF90 chr19:20228590 3'AG 20228590 Downstream 79bp
chr12 110024582 110024582 1 + G T UCEC 110024579 + 110024559 110024599 41 GAGGAGCCCTCCGATACCATCAAGGGAAGATTTCATCCTTA GAGGAGCCCTCCGATACCATCAATGGAAGATTTCATCCTTA < 41bp 0.716103971643537 0.304910842221058 0.9000956 0.34514078 prediction 0.432207943287074 Functional Loss - MVK ENSG00000110921 CDS Human protein_coding chr12:110024579 chr12:110024582 nonsynonymous SNV 0.478 5 24 hm5C_associated_SNPs_84731 0 0 1 1 2 MVK chr12:110024559 3'AG 110024559 Downstream 24bp
chr12 110024582 110024582 1 + G T UCEC 110024579 + 110024559 110024599 41 GAGGAGCCCTCCGATACCATCAAGGGAAGATTTCATCCTTA GAGGAGCCCTCCGATACCATCAATGGAAGATTTCATCCTTA < 41bp 0.716103971643537 0.304910842221058 0.9000956 0.34514078 prediction 0.432207943287074 Functional Loss - MVK ENSG00000110921 CDS Human protein_coding chr12:110024579 chr12:110024582 nonsynonymous SNV 0.478 5 24 hm5C_associated_SNPs_84731 0 0 1 1 2 MVK chr12:110024604 5'GT 110024604 Upstream 23bp
chr19 11727567 11727567 1 + C T CESC 11727564 + 11727544 11727584 41 GGTGGTCAAGGTGAAGAAACCTTCAGCCAGATTCCAGATGG GGTGGTCAAGGTGAAGAAACCTTTAGCCAGATTCCAGATGG < 41bp 0.729074383830227 0.512974996648085 0.10997945 0.07975048 prediction 0.432198774364284 Functional Loss - ZNF627 ENSG00000198551 CDS Human protein_coding chr19:11727564 chr19:11727567 synonymous SNV . 0 24 hm5C_associated_SNPs_84733 0 0 1 0 1 ZNF627 chr19:11727510 3'AG 11727510 Downstream 58bp
chr12 971300 971300 1 + G A UCS 971297 + 971277 971317 41 ATCCTCTGTCTTCACAGAATCTCGAGTGAGCAGCCAACAGA ATCCTCTGTCTTCACAGAATCTCAAGTGAGCAGCCAACAGA < 41bp 0.716098583538491 0.488673949136104 0.21627462 0.10443348 prediction 0.432197167076983 Functional Loss - WNK1 ENSG00000060237 CDS Human protein_coding chr12:971297 chr12:971300 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_84734 0 0 1 0 1 WNK1 chr12:971249 3'AG 971249 Downstream 52bp
chr2 241631714 241631714 1 + T C UCEC 241631713 + 241631693 241631733 41 GCATGCAGGCCGCCTGCACCCTGATGCGCCTCTGCTGGGCC GCATGCAGGCCGCCTGCACCCCGATGCGCCTCTGCTGGGCC < 41bp 0.728824362182563 0.512731651270768 0.25108483 0.18374518 prediction 0.432185421823589 Functional Loss - AQP12A ENSG00000184945 CDS Human protein_coding chr2:241631713 chr2:241631714 nonsynonymous SNV 0.008 3 22 hm5C_associated_SNPs_84739 0 0 0 0 1 AQP12A chr2:241631629 3'AG 241631629 Downstream 86bp
chr21 47969758 47969758 1 + C T HNSC 47969756 + 47969736 47969776 41 GCTGAGCAGCGGCCGGATGCCTCGGAGGAGGACAGCTTCCA GCTGAGCAGCGGCCGGATGCCTTGGAGGAGGACAGCTTCCA < 41bp 0.838237340155414 0.622145426083869 0.22377458 0.21153033 prediction 0.432183828143089 Functional Loss - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47969756 chr21:47969758 nonsynonymous SNV 0.753 3 23 hm5C_associated_SNPs_84740 0 0 1 0 2 DIP2A chr21:47969684 3'AG 47969684 Downstream 75bp
chr21 47969758 47969758 1 + C T HNSC 47969756 + 47969736 47969776 41 GCTGAGCAGCGGCCGGATGCCTCGGAGGAGGACAGCTTCCA GCTGAGCAGCGGCCGGATGCCTTGGAGGAGGACAGCTTCCA < 41bp 0.838237340155414 0.622145426083869 0.22377458 0.21153033 prediction 0.432183828143089 Functional Loss - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47969756 chr21:47969758 nonsynonymous SNV 0.753 3 23 hm5C_associated_SNPs_84740 0 0 1 0 2 DIP2A chr21:47969798 5'GT 47969798 Upstream 41bp
chr10 75871847 75871847 1 + G T THYM 75871844 + 75871824 75871864 41 CCGCGGCTCAGTCCTTGCATCGGGAAGCTACCAAGTGGTCT CCGCGGCTCAGTCCTTGCATCGGTAAGCTACCAAGTGGTCT < 41bp 0.716090911448086 0.33163615909051 0.89780045 0.49646136 prediction 0.432181822896172 Functional Loss - VCL ENSG00000035403 CDS Human protein_coding chr10:75871844 chr10:75871847 stopgain 1.000 1 24 hm5C_associated_SNPs_84741 0 0 1 0 1 VCL chr10:75871870 5'GT 75871870 Upstream 24bp
chr11 57313471 57313471 1 + G A LUSC 57313468 + 57313448 57313488 41 CCTGCTCGGCCCCGGGGGCCCCGGGCACAGAACCGCAAAGC CCTGCTCGGCCCCGGGGGCCCCGAGCACAGAACCGCAAAGC < 41bp 0.814144876379551 0.598059590242534 0.9120985 0.87546587 prediction 0.432170572274035 Functional Loss - SMTNL1 ENSG00000214872 CDS Human protein_coding chr11:57313468 chr11:57313471 synonymous SNV . 0 24 hm5C_associated_SNPs_84746 0 0 0 0 1 SMTNL1 chr11:57313509 5'GT 57313509 Upstream 39bp
chr3 121591449 121591449 1 + A C UCEC 121591445 + 121591425 121591465 41 TGTGATAGTTCATCAGATTCCAAAAGTTCATCATCTTCAAG TGTGATAGTTCATCAGATTCCAAACGTTCATCATCTTCAAG < 41bp 0.716085117702588 0.312919351895461 0.044487834 0.06578851 prediction 0.432170235405176 Functional Loss - EAF2 ENSG00000145088 CDS Human protein_coding chr3:121591445 chr3:121591449 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_84747 0 0 0 0 1 EAF2 chr3:121591384 3'AG 121591384 Downstream 66bp
chr1 233091398 233091398 1 + G A UCEC 233091395 + 233091375 233091415 41 TTTATACCGAAGAAGTCAGACAGGGAGGGAGAAGAATAGGA TTTATACCGAAGAAGTCAGACAGAGAGGGAGAAGAATAGGA < 41bp 0.766555709338971 0.550473109453634 0.436389 0.33262396 prediction 0.432165199770673 Functional Loss - NTPCR ENSG00000135778 CDS Human protein_coding chr1:233091395 chr1:233091398 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_84748 0 0 1 0 2 NTPCR chr1:233091303 3'AG 233091303 Downstream 96bp
chr1 233091398 233091398 1 + G A UCEC 233091395 + 233091375 233091415 41 TTTATACCGAAGAAGTCAGACAGGGAGGGAGAAGAATAGGA TTTATACCGAAGAAGTCAGACAGAGAGGGAGAAGAATAGGA < 41bp 0.766555709338971 0.550473109453634 0.436389 0.33262396 prediction 0.432165199770673 Functional Loss - NTPCR ENSG00000135778 CDS Human protein_coding chr1:233091395 chr1:233091398 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_84748 0 0 1 0 2 NTPCR chr1:233091465 5'GT 233091465 Upstream 68bp
chr7 36445878 36445878 1 + G A UCEC 36445875 + 36445855 36445895 41 AGACCTCTGCTTTCAAATGCCTCGGCAACTCCAGTTGGCAG AGACCTCTGCTTTCAAATGCCTCAGCAACTCCAGTTGGCAG < 41bp 0.788995267107118 0.572915084113 0.12510389 0.023000628 prediction 0.432160365988236 Functional Loss - ANLN ENSG00000011426 CDS Human protein_coding chr7:36445875 chr7:36445878 synonymous SNV . 0 24 hm5C_associated_SNPs_84750 0 0 1 0 1 ANLN chr7:36445790 3'AG 36445790 Downstream 89bp
chr1 210014250 210014250 1 + G A CESC 210014247 + 210014227 210014267 41 CTCTATGCCCCGTTTTACTCCTCGGATATCCTCATTGCTTC CTCTATGCCCCGTTTTACTCCTCAGATATCCTCATTGCTTC < 41bp 0.792636939952582 0.576556855658022 0.14148077 0.07281318 prediction 0.432160168589121 Functional Loss - DIEXF ENSG00000117597 CDS Human protein_coding chr1:210014247 chr1:210014250 synonymous SNV . 0 24 hm5C_associated_SNPs_84751 0 0 1 0 1 DIEXF chr1:210014198 3'AG 210014198 Downstream 53bp
chr8 69002885 69002885 1 + A T STAD 69002881 + 69002861 69002901 41 AAGGTGAATGGAATCAATGTCAGCAAAGAGACACATGCCAG AAGGTGAATGGAATCAATGTCAGCTAAGAGACACATGCCAG < 41bp 0.716079459207499 0.378528438038986 0.2798016 0.28896686 prediction 0.432158918414999 Functional Loss - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69002881 chr8:69002885 stopgain 0.998 1 25 hm5C_associated_SNPs_84752 0 0 0 0 2 PREX2 chr8:69002814 3'AG 69002814 Downstream 72bp
chr8 69002885 69002885 1 + A T STAD 69002881 + 69002861 69002901 41 AAGGTGAATGGAATCAATGTCAGCAAAGAGACACATGCCAG AAGGTGAATGGAATCAATGTCAGCTAAGAGACACATGCCAG < 41bp 0.716079459207499 0.378528438038986 0.2798016 0.28896686 prediction 0.432158918414999 Functional Loss - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69002881 chr8:69002885 stopgain 0.998 1 25 hm5C_associated_SNPs_84752 0 0 0 0 2 PREX2 chr8:69002950 5'GT 69002950 Upstream 66bp
chr10 43604511 43604511 1 + G T LUSC 43604507 + 43604487 43604527 41 CTCAACCGGAACCTCTCCATCTCGGAGAACCGCACCATGCA CTCAACCGGAACCTCTCCATCTCGTAGAACCGCACCATGCA < 41bp 0.721766318025598 0.50568754580312 0.9520107 0.80276275 prediction 0.432157544444957 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43604507 chr10:43604511 stopgain 0.283 1 25 hm5C_associated_SNPs_84753 0 0 1 0 1 RET chr10:43604479 3'AG 43604479 Downstream 33bp
chr3 30732963 30732963 1 + G T HNSC 30732960 + 30732940 30732980 41 CTGAGTGCTGGGACCACGACCCAGAGGCCCGTCTCACAGCC CTGAGTGCTGGGACCACGACCCATAGGCCCGTCTCACAGCC < 41bp 0.716073619095205 0.326640165606389 0.21236864 0.012507975 prediction 0.432147238190411 Functional Loss - TGFBR2 ENSG00000163513 CDS Human protein_coding chr3:30732960 chr3:30732963 stopgain 0.784 1 24 hm5C_associated_SNPs_84757 0 0 1 0 1 TGFBR2 chr3:30732912 3'AG 30732912 Downstream 52bp
chr3 30732964 30732964 1 + A T PAAD 30732960 + 30732940 30732980 41 CTGAGTGCTGGGACCACGACCCAGAGGCCCGTCTCACAGCC CTGAGTGCTGGGACCACGACCCAGTGGCCCGTCTCACAGCC < 41bp 0.716073619095205 0.39963720310093 0.21236864 0.071519256 prediction 0.432147238190411 Functional Loss - TGFBR2 ENSG00000163513 CDS Human protein_coding chr3:30732960 chr3:30732964 nonsynonymous SNV 0.843 4 25 hm5C_associated_SNPs_84758 0 0 1 0 1 TGFBR2 chr3:30732912 3'AG 30732912 Downstream 53bp
chr7 134254273 134254273 1 + G A GBM 134254270 + 134254250 134254290 41 TCTATCTTATTCACTGGCCACAGGGATTCAAGGTTTGAGTG TCTATCTTATTCACTGGCCACAGAGATTCAAGGTTTGAGTG < 41bp 0.766114356267841 0.550040915557369 0.8210092 0.11845687 prediction 0.432146881420943 Functional Loss - AKR1B15 ENSG00000227471 CDS Human protein_coding chr7:134254270 chr7:134254273 nonsynonymous SNV 0.880 3 24 hm5C_associated_SNPs_84759 0 0 0 0 1 AKR1B15 chr7:134254281 5'GT 134254281 Upstream 9bp
chr1 113269283 113269283 1 + G A SKCM 113269280 + 113269260 113269300 41 TAGCTCTTGGGGGTCACGGCCTGGACAAGAAAGGCTTGACT TAGCTCTTGGGGGTCACGGCCTGAACAAGAAAGGCTTGACT < 41bp 0.782274897385879 0.56620453165661 0.29782838 0.16726092 prediction 0.432140731458536 Functional Loss - FAM19A3 ENSG00000184599 CDS Human protein_coding chr1:113269280 chr1:113269283 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_84760 0 0 0 0 1 FAM19A3 chr1:113269251 3'AG 113269251 Downstream 33bp
chr19 10200684 10200684 1 + C T BRCA 10200681 + 10200661 10200701 41 CGGCAGTTTGCCTGCTCCTCCTGCGACCACGTCTGGTGGCG CGGCAGTTTGCCTGCTCCTCCTGTGACCACGTCTGGTGGCG < 41bp 0.716070123294099 0.498544482397639 0.2720819 0.22990754 prediction 0.432140246588198 Functional Loss - C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10200681 chr19:10200684 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_84761 0 0 1 0 1 C19orf66 chr19:10200723 5'GT 10200723 Upstream 40bp
chr14 60976677 60976677 1 + A T COAD 60976673 + 60976653 60976693 41 CCGACAAAGGGACCGAGCGGCTGCAGCCAAGAACAGGTCGG CCGACAAAGGGACCGAGCGGCTGCTGCCAAGAACAGGTCGG < 41bp 0.716069781182173 0.383097963509332 0.6873679 0.4990475 prediction 0.432139562364346 Functional Loss - SIX6 ENSG00000184302 CDS Human protein_coding chr14:60976673 chr14:60976677 synonymous SNV . 0 25 hm5C_associated_SNPs_84763 0 0 0 0 1 SIX6 chr14:60976688 5'GT 60976688 Upstream 12bp
chr16 1392740 1392740 1 + G T LUAD 1392738 + 1392718 1392758 41 AGAGGGATACGGCCATGAGCCAGCGCGGGCGATCCGGCTTC AGAGGGATACGGCCATGAGCCATCGCGGGCGATCCGGCTTC < 41bp 0.716069490289844 0.358440102224456 0.55407244 0.2859935 prediction 0.432138980579689 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1392738 chr16:1392740 nonsynonymous SNV 0.125 0 23 hm5C_associated_SNPs_84764 0 0 0 0 2 BAIAP3 chr16:1392720 3'AG 1392720 Downstream 21bp
chr16 1392740 1392740 1 + G T LUAD 1392738 + 1392718 1392758 41 AGAGGGATACGGCCATGAGCCAGCGCGGGCGATCCGGCTTC AGAGGGATACGGCCATGAGCCATCGCGGGCGATCCGGCTTC < 41bp 0.716069490289844 0.358440102224456 0.55407244 0.2859935 prediction 0.432138980579689 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1392738 chr16:1392740 nonsynonymous SNV 0.125 0 23 hm5C_associated_SNPs_84764 0 0 0 0 2 BAIAP3 chr16:1392815 5'GT 1392815 Upstream 76bp
chr3 156139422 156139422 1 + G A SKCM 156139419 + 156139399 156139439 41 TTATAGGAATCTTGGAAAATCAGGACTCAGAGTTTCTTGCT TTATAGGAATCTTGGAAAATCAGAACTCAGAGTTTCTTGCT < 41bp 0.744844235794719 0.52877806885443 0.8349174 0.36137974 prediction 0.432132333880576 Functional Loss - KCNAB1 ENSG00000169282 CDS Human protein_coding chr3:156139419 chr3:156139422 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_84766 0 0 0 0 2 KCNAB1 chr3:156139405 3'AG 156139405 Downstream 18bp
chr3 156139422 156139422 1 + G A SKCM 156139419 + 156139399 156139439 41 TTATAGGAATCTTGGAAAATCAGGACTCAGAGTTTCTTGCT TTATAGGAATCTTGGAAAATCAGAACTCAGAGTTTCTTGCT < 41bp 0.744844235794719 0.52877806885443 0.8349174 0.36137974 prediction 0.432132333880576 Functional Loss - KCNAB1 ENSG00000169282 CDS Human protein_coding chr3:156139419 chr3:156139422 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_84766 0 0 0 0 2 KCNAB1 chr3:156139448 5'GT 156139448 Upstream 27bp
chr17 48650200 48650200 1 + G T LUAD 48650197 + 48650177 48650217 41 TTTGACAACATTGGCTATGCCTGGATCGCCATCTTCCAGGT TTTGACAACATTGGCTATGCCTGTATCGCCATCTTCCAGGT < 41bp 0.897382734572858 0.681316879013569 0.3925181 0.11673275 prediction 0.432131711118577 Functional Loss - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48650197 chr17:48650200 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_84767 0 0 0 0 1 CACNA1G chr17:48650215 5'GT 48650215 Upstream 16bp
chr19 34890190 34890190 1 + C T LUSC 34890187 + 34890167 34890207 41 CGGAGGAGGCCCGAAAGGAGCTCCAGGCTGCGGGCAAGAGT CGGAGGAGGCCCGAAAGGAGCTCTAGGCTGCGGGCAAGAGT < 41bp 0.716064296539675 0.477068197926966 0.45038563 0.37109837 prediction 0.43212859307935 Functional Loss - GPI ENSG00000105220 CDS Human protein_coding chr19:34890187 chr19:34890190 stopgain 0.862 1 24 hm5C_associated_SNPs_84769 0 0 1 0 2 GPI chr19:34890112 3'AG 34890112 Downstream 79bp
chr19 34890190 34890190 1 + C T LUSC 34890187 + 34890167 34890207 41 CGGAGGAGGCCCGAAAGGAGCTCCAGGCTGCGGGCAAGAGT CGGAGGAGGCCCGAAAGGAGCTCTAGGCTGCGGGCAAGAGT < 41bp 0.716064296539675 0.477068197926966 0.45038563 0.37109837 prediction 0.43212859307935 Functional Loss - GPI ENSG00000105220 CDS Human protein_coding chr19:34890187 chr19:34890190 stopgain 0.862 1 24 hm5C_associated_SNPs_84769 0 0 1 0 2 GPI chr19:34890240 5'GT 34890240 Upstream 51bp
chr1 77752791 77752791 1 + C T HNSC 77752789 + 77752769 77752809 41 TCCACTAAATGGAGGACAGTCACGGAGATCCTTTCTAAGAA TCCACTAAATGGAGGACAGTCATGGAGATCCTTTCTAAGAA < 41bp 0.716050209594488 0.432395885471366 0.4728413 0.5467622 prediction 0.432100419188977 Functional Loss - AK5 ENSG00000154027 CDS Human protein_coding chr1:77752789 chr1:77752791 nonsynonymous SNV 0.965 4 23 hm5C_associated_SNPs_84777 0 0 0 0 1 AK5 chr1:77752812 5'GT 77752812 Upstream 22bp
chr1 77752792 77752792 1 + G A STAD 77752789 + 77752769 77752809 41 TCCACTAAATGGAGGACAGTCACGGAGATCCTTTCTAAGAA TCCACTAAATGGAGGACAGTCACAGAGATCCTTTCTAAGAA < 41bp 0.716050209594488 0.488905648738501 0.4728413 0.2452029 prediction 0.432100419188977 Functional Loss - AK5 ENSG00000154027 CDS Human protein_coding chr1:77752789 chr1:77752792 nonsynonymous SNV 0.982 2 24 hm5C_associated_SNPs_84778 0 0 0 0 1 AK5 chr1:77752812 5'GT 77752812 Upstream 21bp
chr11 120702643 120702643 1 + G T LUAD 120702641 + 120702621 120702661 41 TCCGCATGCTGGATGACACCCGGGACCCCACCCCGCTCCTC TCCGCATGCTGGATGACACCCGTGACCCCACCCCGCTCCTC < 41bp 0.90897634295521 0.692927351972768 0.9364206 0.15120754 prediction 0.432097981964883 Functional Loss - GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120702641 chr11:120702643 synonymous SNV . 0 23 hm5C_associated_SNPs_84779 0 0 0 0 2 GRIK4 chr11:120702561 3'AG 120702561 Downstream 83bp
chr11 120702643 120702643 1 + G T LUAD 120702641 + 120702621 120702661 41 TCCGCATGCTGGATGACACCCGGGACCCCACCCCGCTCCTC TCCGCATGCTGGATGACACCCGTGACCCCACCCCGCTCCTC < 41bp 0.90897634295521 0.692927351972768 0.9364206 0.15120754 prediction 0.432097981964883 Functional Loss - GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120702641 chr11:120702643 synonymous SNV . 0 23 hm5C_associated_SNPs_84779 0 0 0 0 2 GRIK4 chr11:120702739 5'GT 120702739 Upstream 97bp
chrX 49855396 49855396 1 + C T SKCM 49855393 + 49855373 49855413 41 TTATTTCACGGAGCATTCTCCTCCATTGCCACCATACACTC TTATTTCACGGAGCATTCTCCTCTATTGCCACCATACACTC < 41bp 0.716046292006166 0.483422957531888 0.9700041 0.95441294 prediction 0.432092584012332 Functional Loss - CLCN5 ENSG00000171365 CDS Human protein_coding chrX:49855393 chrX:49855396 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_84781 0 0 1 0 1 CLCN5 chrX:49855327 3'AG 49855327 Downstream 70bp
chr14 105399139 105399139 1 + G A COAD 105399136 + 105399116 105399156 41 TCGGAGGATTACTTCAGCAGCACGGCGGGGGTGGGCTTGGT TCGGAGGATTACTTCAGCAGCACAGCGGGGGTGGGCTTGGT < 41bp 0.784236510652267 0.568195494953578 0.3285822 0.44169536 prediction 0.432082031397379 Functional Loss - PLD4 ENSG00000166428 CDS Human protein_coding chr14:105399136 chr14:105399139 synonymous SNV . 0 24 hm5C_associated_SNPs_84785 0 0 0 0 1 PLD4 chr14:105399102 3'AG 105399102 Downstream 38bp
chrX 109416558 109416558 1 + G A UCEC 109416555 + 109416535 109416575 41 CTGGTATCGCATCTGGGCCTCGGGACACCAGACTCTCATGA CTGGTATCGCATCTGGGCCTCGGAACACCAGACTCTCATGA < 41bp 0.779546898255222 0.563517299988943 0.40186116 0.29888165 prediction 0.432059196532558 Functional Loss - TMEM164 ENSG00000157600 CDS Human protein_coding chrX:109416555 chrX:109416558 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_84789 0 0 1 0 1 TMEM164 chrX:109416473 3'AG 109416473 Downstream 86bp
chr17 65944394 65944394 1 + T C STAD 65944393 + 65944373 65944413 41 TCCTGAAGAAGAGAGCACTCCTGGACAAGGATCTGCAAATT TCCTGAAGAAGAGAGCACTCCCGGACAAGGATCTGCAAATT < 41bp 0.716029544304287 0.460752786716118 0.37972927 0.29967457 prediction 0.432059088608574 Functional Loss - BPTF ENSG00000171634 CDS Human protein_coding chr17:65944393 chr17:65944394 nonsynonymous SNV 0.621 3 22 hm5C_associated_SNPs_84790 0 0 1 0 1 BPTF chr17:65944422 5'GT 65944422 Upstream 29bp
chr21 47412098 47412098 1 + G C COAD 47412094 + 47412074 47412114 41 ACAGGGCCAGCCGGGAGAGCCTGGGCCCCCCGGAGAGAAAG ACAGGGCCAGCCGGGAGAGCCTGGCCCCCCCGGAGAGAAAG < 41bp 0.716028272735413 0.410849648074532 0.8293376 0.37153822 prediction 0.432056545470826 Functional Loss - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47412094 chr21:47412098 synonymous SNV . 0 25 hm5C_associated_SNPs_84792 0 0 1 0 2 COL6A1 chr21:47412078 3'AG 47412078 Downstream 21bp
chr21 47412098 47412098 1 + G C COAD 47412094 + 47412074 47412114 41 ACAGGGCCAGCCGGGAGAGCCTGGGCCCCCCGGAGAGAAAG ACAGGGCCAGCCGGGAGAGCCTGGCCCCCCCGGAGAGAAAG < 41bp 0.716028272735413 0.410849648074532 0.8293376 0.37153822 prediction 0.432056545470826 Functional Loss - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47412094 chr21:47412098 synonymous SNV . 0 25 hm5C_associated_SNPs_84792 0 0 1 0 2 COL6A1 chr21:47412131 5'GT 47412131 Upstream 34bp
chr2 97213229 97213229 1 + G T rs141960943 97213227 + 97213207 97213247 41 AAACCTGCTGGCAAGCAGAACGGAATCCAGAACCCCATCTC AAACCTGCTGGCAAGCAGAACGTAATCCAGAACCCCATCTC < 41bp 0.716027229497082 0.375086402393117 0.24128029 0.07429153 prediction 0.432054458994164 Functional Loss - ARID5A ENSG00000196843 CDS Human protein_coding chr2:97213227 chr2:97213229 nonsynonymous SNV 0.985 0 23 hm5C_associated_SNPs_84793 0 0 0 0 2 ARID5A chr2:97213139 3'AG 97213139 Downstream 91bp
chr2 97213229 97213229 1 + G T rs141960943 97213227 + 97213207 97213247 41 AAACCTGCTGGCAAGCAGAACGGAATCCAGAACCCCATCTC AAACCTGCTGGCAAGCAGAACGTAATCCAGAACCCCATCTC < 41bp 0.716027229497082 0.375086402393117 0.24128029 0.07429153 prediction 0.432054458994164 Functional Loss - ARID5A ENSG00000196843 CDS Human protein_coding chr2:97213227 chr2:97213229 nonsynonymous SNV 0.985 0 23 hm5C_associated_SNPs_84793 0 0 0 0 2 ARID5A chr2:97213254 5'GT 97213254 Upstream 26bp
chr1 151261168 151261168 1 + C T COAD 151261166 + 151261146 151261186 41 AGGCCTGTCTGCACGTCTCTCGCCGTGTAGGATACAGGTGC AGGCCTGTCTGCACGTCTCTCGTCGTGTAGGATACAGGTGC < 41bp 0.716026496798715 0.443079221874715 0.65671706 0.59750646 prediction 0.43205299359743 Functional Loss - ZNF687 ENSG00000143373 CDS Human protein_coding chr1:151261166 chr1:151261168 synonymous SNV . 0 23 hm5C_associated_SNPs_84794 0 0 1 0 1 ZNF687 chr1:151261182 5'GT 151261182 Upstream 15bp
chr1 20417135 20417135 1 + C T UCEC 20417132 + 20417112 20417152 41 TCTACTGCCTCAAGAGAAACCTACGGAGCTACAACCCACAG TCTACTGCCTCAAGAGAAACCTATGGAGCTACAACCCACAG < 41bp 0.72391045796216 0.507886004157645 0.17053103 0.15823027 prediction 0.43204890760903 Functional Loss - PLA2G5 ENSG00000127472 CDS Human protein_coding chr1:20417132 chr1:20417135 nonsynonymous SNV 0.324 1 24 hm5C_associated_SNPs_84796 0 0 0 0 1 PLA2G5 chr1:20417061 3'AG 20417061 Downstream 75bp
chr10 90427435 90427435 1 + G T LUAD 90427432 + 90427412 90427452 41 TCCTTATGGGAAGAAAAATTCAGGGAATACAGGTATATATA TCCTTATGGGAAGAAAAATTCAGTGAATACAGGTATATATA < 41bp 0.716015642327472 0.341467256581914 0.9008672 0.33101612 prediction 0.432031284654943 Functional Loss - LIPF ENSG00000182333 CDS Human protein_coding chr10:90427432 chr10:90427435 nonsynonymous SNV 0.091 1 24 hm5C_associated_SNPs_84799 0 0 0 0 1 LIPF chr10:90427443 5'GT 90427443 Upstream 9bp
chr1 111439300 111439300 1 + C T GBM 111439298 + 111439278 111439318 41 CAGTGTTGTGGTATAAATGGCACGAGTGATTGGACCAGTGG CAGTGTTGTGGTATAAATGGCATGAGTGATTGGACCAGTGG < 41bp 0.842971748135174 0.626956185552702 0.20522007 0.255085 prediction 0.432031125164943 Functional Loss - CD53 ENSG00000143119 CDS Human protein_coding chr1:111439298 chr1:111439300 nonsynonymous SNV 0.946 1 23 hm5C_associated_SNPs_84800 0 0 1 0 2 CD53 chr1:111439275 3'AG 111439275 Downstream 26bp
chr1 111439300 111439300 1 + C T GBM 111439298 + 111439278 111439318 41 CAGTGTTGTGGTATAAATGGCACGAGTGATTGGACCAGTGG CAGTGTTGTGGTATAAATGGCATGAGTGATTGGACCAGTGG < 41bp 0.842971748135174 0.626956185552702 0.20522007 0.255085 prediction 0.432031125164943 Functional Loss - CD53 ENSG00000143119 CDS Human protein_coding chr1:111439298 chr1:111439300 nonsynonymous SNV 0.946 1 23 hm5C_associated_SNPs_84800 0 0 1 0 2 CD53 chr1:111439355 5'GT 111439355 Upstream 56bp
chr1 33233558 33233558 1 + G T PAAD 33233555 + 33233535 33233575 41 GGCTCCGCTCCCTACAACACCAAGGTAAGCTTCCTCTCCAC GGCTCCGCTCCCTACAACACCAATGTAAGCTTCCTCTCCAC < 41bp 0.71601482116388 0.306014512577472 0.9277048 0.32646027 prediction 0.43202964232776 Functional Loss - KIAA1522 ENSG00000162522 CDS Human protein_coding chr1:33233555 chr1:33233558 stopgain 0.973 1 24 hm5C_associated_SNPs_84801 0 0 0 0 1 KIAA1522 chr1:33233558 5'GT 33233558 Upstream 1bp
chr15 89838324 89838324 1 + C T UCEC 89838322 + 89838302 89838342 41 TCAGAACCTCTGTGACATAACTCGGTAAGCCACTCCCACCC TCAGAACCTCTGTGACATAACTTGGTAAGCCACTCCCACCC < 41bp 0.841148173499749 0.625133791755735 0.19997555 0.24279314 prediction 0.432028763488028 Functional Loss - FANCI ENSG00000140525 CDS Human protein_coding chr15:89838322 chr15:89838324 stopgain 1.000 1 23 hm5C_associated_SNPs_84802 0 0 1 0 1 FANCI chr15:89838325 5'GT 89838325 Upstream 2bp
chr1 154516462 154516462 1 + T C COAD 154516461 + 154516441 154516481 41 GGTCCTTCCTGGTGCTGCTCCTGAGGGAATGCTTCCGAGAC GGTCCTTCCTGGTGCTGCTCCCGAGGGAATGCTTCCGAGAC < 41bp 0.716013537213558 0.471886855217713 0.712061 0.92407715 prediction 0.432027074427115 Functional Loss - TDRD10 ENSG00000163239 CDS Human protein_coding chr1:154516461 chr1:154516462 nonsynonymous SNV 0.018 1 22 hm5C_associated_SNPs_84804 0 0 0 0 1 TDRD10 chr1:154516439 3'AG 154516439 Downstream 24bp
chr19 34890640 34890640 1 + G T UCEC 34890637 + 34890617 34890657 41 TCTGCAGCCATGTATGAGCACAAGATCTTCGTTCAGGGCAT TCTGCAGCCATGTATGAGCACAATATCTTCGTTCAGGGCAT < 41bp 0.716013409659801 0.313908460885142 0.37223655 0.1856688 prediction 0.432026819319602 Functional Loss - GPI ENSG00000105220 CDS Human protein_coding chr19:34890637 chr19:34890640 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_84805 0 0 1 0 2 GPI chr19:34890624 3'AG 34890624 Downstream 17bp
chr19 34890640 34890640 1 + G T UCEC 34890637 + 34890617 34890657 41 TCTGCAGCCATGTATGAGCACAAGATCTTCGTTCAGGGCAT TCTGCAGCCATGTATGAGCACAATATCTTCGTTCAGGGCAT < 41bp 0.716013409659801 0.313908460885142 0.37223655 0.1856688 prediction 0.432026819319602 Functional Loss - GPI ENSG00000105220 CDS Human protein_coding chr19:34890637 chr19:34890640 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_84805 0 0 1 0 2 GPI chr19:34890690 5'GT 34890690 Upstream 51bp
chr11 35198160 35198160 1 + G A STAD 35198157 + 35198137 35198177 41 GCCGCTTTGCAGGTGTATTCCACGTGGAGAAAAATGGTCGC GCCGCTTTGCAGGTGTATTCCACATGGAGAAAAATGGTCGC < 41bp 0.75134723149893 0.535334536897923 0.3870799 0.26242763 prediction 0.432025389202014 Functional Loss - CD44 ENSG00000026508 CDS Human protein_coding chr11:35198157 chr11:35198160 nonsynonymous SNV 0.912 4 24 hm5C_associated_SNPs_84806 0 0 1 1 1 CD44 chr11:35198122 3'AG 35198122 Downstream 39bp
chr22 25623892 25623892 1 + G A SKCM 25623889 + 25623869 25623909 41 GAGAAGGGTGAGTACCCCCGCTGGGACTCATGGACCAGCAG GAGAAGGGTGAGTACCCCCGCTGAGACTCATGGACCAGCAG < 41bp 0.798721952212491 0.58271088367613 0.15329534 0.42902634 prediction 0.432022137072721 Functional Loss - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25623889 chr22:25623892 stopgain 0.997 1 24 hm5C_associated_SNPs_84810 0 0 0 0 2 CRYBB2 chr22:25623820 3'AG 25623820 Downstream 73bp
chr22 25623892 25623892 1 + G A SKCM 25623889 + 25623869 25623909 41 GAGAAGGGTGAGTACCCCCGCTGGGACTCATGGACCAGCAG GAGAAGGGTGAGTACCCCCGCTGAGACTCATGGACCAGCAG < 41bp 0.798721952212491 0.58271088367613 0.15329534 0.42902634 prediction 0.432022137072721 Functional Loss - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25623889 chr22:25623892 stopgain 0.997 1 24 hm5C_associated_SNPs_84810 0 0 0 0 2 CRYBB2 chr22:25623952 5'GT 25623952 Upstream 61bp
chr5 65054587 65054587 1 + G A rs34339013 65054584 + 65054564 65054604 41 TGTACGATGCTGTTGGAATGCTCGGTATTGAGGAAGTAACT TGTACGATGCTGTTGGAATGCTCAGTATTGAGGAAGTAACT < 41bp 0.716010594024355 0.48719134749707 0.14870337 0.20471177 prediction 0.43202118804871 Functional Loss - NLN ENSG00000123213 CDS Human protein_coding chr5:65054584 chr5:65054587 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_84811 0 0 1 0 1 NLN chr5:65054653 5'GT 65054653 Upstream 67bp
chr19 2994981 2994981 1 + C T COAD 2994978 + 2994958 2994998 41 ACAGGCTCCGGGGAGCACGCCTCCGTGTACCAGATCACCTA ACAGGCTCCGGGGAGCACGCCTCTGTGTACCAGATCACCTA < 41bp 0.730833066640058 0.514824631304977 0.1606825 0.0828301 prediction 0.432016870670161 Functional Loss - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2994978 chr19:2994981 synonymous SNV . 0 24 hm5C_associated_SNPs_84812 0 0 0 0 1 TLE6 chr19:2994898 3'AG 2994898 Downstream 84bp
chr17 79080614 79080614 1 + C T UCEC 79080612 + 79080592 79080632 41 ACGACCTGGCCATCCCACCCCCCGATTACGGCGCCGCCTCC ACGACCTGGCCATCCCACCCCCTGATTACGGCGCCGCCTCC < 41bp 0.827481634532291 0.611481336000929 0.13112035 0.1314818 prediction 0.432000597062725 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080612 chr17:79080614 synonymous SNV . 0 23 hm5C_associated_SNPs_84816 0 0 0 0 2 BAIAP2 chr17:79080545 3'AG 79080545 Downstream 70bp
chr17 79080614 79080614 1 + C T UCEC 79080612 + 79080592 79080632 41 ACGACCTGGCCATCCCACCCCCCGATTACGGCGCCGCCTCC ACGACCTGGCCATCCCACCCCCTGATTACGGCGCCGCCTCC < 41bp 0.827481634532291 0.611481336000929 0.13112035 0.1314818 prediction 0.432000597062725 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080612 chr17:79080614 synonymous SNV . 0 23 hm5C_associated_SNPs_84816 0 0 0 0 2 BAIAP2 chr17:79080707 5'GT 79080707 Upstream 94bp
chr11 124502020 124502020 1 + A T rs75601279 124502016 + 124501996 124502036 41 GGACCTCCCAGAGCTTCAGCCTGCAGCCTTTGTGTCTTCTT GGACCTCCCAGAGCTTCAGCCTGCTGCCTTTGTGTCTTCTT < 41bp 0.715999118050335 0.388341825790624 0.2714483 0.21790203 prediction 0.43199823610067 Functional Loss - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502016 chr11:124502020 synonymous SNV . 0 25 hm5C_associated_SNPs_84817 0 0 1 0 1 TBRG1 chr11:124501989 3'AG 124501989 Downstream 32bp
chr17 18141431 18141431 1 + G A STAD 18141428 + 18141408 18141448 41 GGCCATGGAGGGTCCGCTCTCCCGGGTGAAGTCTCTCAAGA GGCCATGGAGGGTCCGCTCTCCCAGGTGAAGTCTCTCAAGA < 41bp 0.81182193351479 0.595824556899751 0.9344263 0.43295714 prediction 0.431994753230079 Functional Loss - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18141428 chr17:18141431 nonsynonymous SNV 0.970 3 24 hm5C_associated_SNPs_84819 0 0 1 0 2 LLGL1 chr17:18141381 3'AG 18141381 Downstream 51bp
chr17 18141431 18141431 1 + G A STAD 18141428 + 18141408 18141448 41 GGCCATGGAGGGTCCGCTCTCCCGGGTGAAGTCTCTCAAGA GGCCATGGAGGGTCCGCTCTCCCAGGTGAAGTCTCTCAAGA < 41bp 0.81182193351479 0.595824556899751 0.9344263 0.43295714 prediction 0.431994753230079 Functional Loss - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18141428 chr17:18141431 nonsynonymous SNV 0.970 3 24 hm5C_associated_SNPs_84819 0 0 1 0 2 LLGL1 chr17:18141528 5'GT 18141528 Upstream 98bp
chr15 101606848 101606848 1 + C T rs41334650 101606846 + 101606826 101606866 41 CTGGGTTTTGGTTGCTTAGGCGCGGTGGAGATGTTATCGTC CTGGGTTTTGGTTGCTTAGGCGTGGTGGAGATGTTATCGTC < 41bp 0.715989037350785 0.449536716380499 0.53859884 0.5175184 prediction 0.431978074701571 Functional Loss - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101606846 chr15:101606848 synonymous SNV . 0 23 hm5C_associated_SNPs_84827 0 0 0 0 2 LRRK1 chr15:101606845 3'AG 101606845 Downstream 4bp
chr15 101606848 101606848 1 + C T rs41334650 101606846 + 101606826 101606866 41 CTGGGTTTTGGTTGCTTAGGCGCGGTGGAGATGTTATCGTC CTGGGTTTTGGTTGCTTAGGCGTGGTGGAGATGTTATCGTC < 41bp 0.715989037350785 0.449536716380499 0.53859884 0.5175184 prediction 0.431978074701571 Functional Loss - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101606846 chr15:101606848 synonymous SNV . 0 23 hm5C_associated_SNPs_84827 0 0 0 0 2 LRRK1 chr15:101606946 5'GT 101606946 Upstream 99bp
chr2 231927299 231927299 1 + G A STAD 231927296 + 231927276 231927316 41 CATCTAAAGTATTTTATCACCTGGGGGCTTTTGAGGAGTCT CATCTAAAGTATTTTATCACCTGAGGGCTTTTGAGGAGTCT < 41bp 0.760114837370406 0.544130214256511 0.4307791 0.26759663 prediction 0.431969246227789 Functional Loss - PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231927296 chr2:231927299 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_84829 0 0 1 0 2 PSMD1 chr2:231927220 3'AG 231927220 Downstream 80bp
chr2 231927299 231927299 1 + G A STAD 231927296 + 231927276 231927316 41 CATCTAAAGTATTTTATCACCTGGGGGCTTTTGAGGAGTCT CATCTAAAGTATTTTATCACCTGAGGGCTTTTGAGGAGTCT < 41bp 0.760114837370406 0.544130214256511 0.4307791 0.26759663 prediction 0.431969246227789 Functional Loss - PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231927296 chr2:231927299 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_84829 0 0 1 0 2 PSMD1 chr2:231927389 5'GT 231927389 Upstream 91bp
chr17 75190846 75190846 1 + A C rs673918 75190842 + 75190822 75190862 41 CGTTGGAGTCCGCCTTCCATCACGACCTCTTCAGAGACATC CGTTGGAGTCCGCCTTCCATCACGCCCTCTTCAGAGACATC < 41bp 0.715981630121257 0.299564178268994 0.038319975 0.026079953 prediction 0.431963260242514 Functional Loss - SEC14L1 ENSG00000129657 CDS Human protein_coding chr17:75190842 chr17:75190846 nonsynonymous SNV 0.012 0 25 hm5C_associated_SNPs_84832 0 0 1 0 1 SEC14L1 chr17:75190759 3'AG 75190759 Downstream 88bp
chr1 171173122 171173122 1 + G A SKCM 171173119 + 171173099 171173139 41 TATGCTCCGCAATGTACTGCCACGAACAGCTGTAAAATGGA TATGCTCCGCAATGTACTGCCACAAACAGCTGTAAAATGGA < 41bp 0.775753823160231 0.559774762595313 0.3638957 0.15852952 prediction 0.431958121129834 Functional Loss - FMO2 ENSG00000094963 CDS Human protein_coding chr1:171173119 chr1:171173122 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_84833 0 0 0 0 1 FMO2 chr1:171173203 5'GT 171173203 Upstream 82bp
chr3 172046848 172046848 1 + G A rs148307624 172046845 + 172046825 172046865 41 GTACACATTCAGGCTGGCCGCTCGAAACGACATTGGTACCA GTACACATTCAGGCTGGCCGCTCAAAACGACATTGGTACCA < 41bp 0.771524617212583 0.555548145440605 0.32335117 0.17548996 prediction 0.431952943543955 Functional Loss - FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172046845 chr3:172046848 nonsynonymous SNV 0.912 1 24 hm5C_associated_SNPs_84835 0 0 1 0 1 FNDC3B chr3:172046866 5'GT 172046866 Upstream 19bp
chr1 4772032 4772032 1 + C T UCEC 4772030 + 4772010 4772050 41 TACTGATAGCCATGTTTCAGCTCGCCGTGGACCTGCCCGCC TACTGATAGCCATGTTTCAGCTTGCCGTGGACCTGCCCGCC < 41bp 0.715974535385768 0.450476810656845 0.16639844 0.15027717 prediction 0.431949070771537 Functional Loss - AJAP1 ENSG00000196581 CDS Human protein_coding chr1:4772030 chr1:4772032 synonymous SNV . 0 23 hm5C_associated_SNPs_84836 0 0 0 0 1 AJAP1 chr1:4771960 3'AG 4771960 Downstream 73bp
chr9 119093569 119093569 1 + A C LGG 119093565 + 119093545 119093585 41 ATCTCAGTGAAGGCATTTCCCAGCATGCCTGGTACCCTTGC ATCTCAGTGAAGGCATTTCCCAGCCTGCCTGGTACCCTTGC < 41bp 0.715973393068574 0.295215415935019 0.7223844 0.5634021 prediction 0.431946786137148 Functional Loss - PAPPA ENSG00000182752 CDS Human protein_coding chr9:119093565 chr9:119093569 nonsynonymous SNV 0.936 2 25 hm5C_associated_SNPs_84838 0 0 0 0 2 PAPPA chr9:119093523 3'AG 119093523 Downstream 47bp
chr9 119093569 119093569 1 + A C LGG 119093565 + 119093545 119093585 41 ATCTCAGTGAAGGCATTTCCCAGCATGCCTGGTACCCTTGC ATCTCAGTGAAGGCATTTCCCAGCCTGCCTGGTACCCTTGC < 41bp 0.715973393068574 0.295215415935019 0.7223844 0.5634021 prediction 0.431946786137148 Functional Loss - PAPPA ENSG00000182752 CDS Human protein_coding chr9:119093565 chr9:119093569 nonsynonymous SNV 0.936 2 25 hm5C_associated_SNPs_84838 0 0 0 0 2 PAPPA chr9:119093636 5'GT 119093636 Upstream 68bp
chr10 85944516 85944516 1 + G T rs76221724 85944514 + 85944494 85944534 41 TGGTGCCTGGGGCACTCCCACAGGTGTAGCACTCCCAAAGC TGGTGCCTGGGGCACTCCCACATGTGTAGCACTCCCAAAGC < 41bp 0.906452642450456 0.690481945397574 0.9086241 0.6371703 prediction 0.431941394105765 Functional Loss - C10orf99 ENSG00000188373 CDS Human protein_coding chr10:85944514 chr10:85944516 nonsynonymous SNV 0.242 3 23 hm5C_associated_SNPs_84840 0 0 0 0 1 C10orf99 chr10:85944437 3'AG 85944437 Downstream 80bp
chr3 154861335 154861335 1 + C T STAD 154861332 + 154861312 154861352 41 GGGGAGGCTTTATGTGGAAGCAGCATTTGCTGGAGAGAGTA GGGGAGGCTTTATGTGGAAGCAGTATTTGCTGGAGAGAGTA < 41bp 0.715969860299543 0.494843101894031 0.3332737 0.3812731 prediction 0.431939720599086 Functional Loss - MME ENSG00000196549 CDS Human protein_coding chr3:154861332 chr3:154861335 nonsynonymous SNV 0.778 3 24 hm5C_associated_SNPs_84841 0 0 0 0 1 MME chr3:154861360 5'GT 154861360 Upstream 26bp
chr18 61226903 61226903 1 + G T UCEC 61226901 + 61226881 61226921 41 GGATCAAGACTGATTACACACTGAGTATTGCCAACAGGCTT GGATCAAGACTGATTACACACTTAGTATTGCCAACAGGCTT < 41bp 0.715967664992399 0.364748258120773 0.137905 0.035583854 prediction 0.431935329984797 Functional Loss - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61226901 chr18:61226903 synonymous SNV . 0 23 hm5C_associated_SNPs_84844 0 0 0 0 2 SERPINB12 chr18:61226811 3'AG 61226811 Downstream 93bp
chr18 61226903 61226903 1 + G T UCEC 61226901 + 61226881 61226921 41 GGATCAAGACTGATTACACACTGAGTATTGCCAACAGGCTT GGATCAAGACTGATTACACACTTAGTATTGCCAACAGGCTT < 41bp 0.715967664992399 0.364748258120773 0.137905 0.035583854 prediction 0.431935329984797 Functional Loss - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61226901 chr18:61226903 synonymous SNV . 0 23 hm5C_associated_SNPs_84844 0 0 0 0 2 SERPINB12 chr18:61226951 5'GT 61226951 Upstream 49bp
chrX 148797484 148797484 1 + T C COAD 148797483 + 148797463 148797503 41 TAACCAGAGTCATCATGCCTCTTGAGCAAAGAAGTCAGCAC TAACCAGAGTCATCATGCCTCCTGAGCAAAGAAGTCAGCAC < 41bp 0.715967085685124 0.478659400123951 0.050163895 0.06659031 prediction 0.431934171370248 Functional Loss - MAGEA11 ENSG00000185247 CDS Human protein_coding chrX:148797483 chrX:148797484 nonsynonymous SNV 0.014 2 22 hm5C_associated_SNPs_84845 0 0 0 0 1 MAGEA11 chrX:148797413 3'AG 148797413 Downstream 72bp
chr2 74683265 74683265 1 + G A LAML 74683262 + 74683242 74683282 41 ATCTCTCTCCCTCTCCACTTCGGGACCTATCAGGAGGGTTA ATCTCTCTCCCTCTCCACTTCGGAACCTATCAGGAGGGTTA < 41bp 0.784801578739598 0.568835115928445 0.90255314 0.34902993 prediction 0.431932925622306 Functional Loss - INO80B ENSG00000115274 CDS Human protein_coding chr2:74683262 chr2:74683265 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_84846 0 0 1 0 1 INO80B chr2:74683230 3'AG 74683230 Downstream 36bp
chr7 31592728 31592728 1 + G A ESCA 31592725 + 31592705 31592745 41 ATCCTGAAGTGCACCAAAAGCGCGTGGGCTCCGCTGGATGA ATCCTGAAGTGCACCAAAAGCGCATGGGCTCCGCTGGATGA < 41bp 0.810909295309688 0.594953812351493 0.38174257 0.31570303 prediction 0.431910965916391 Functional Loss - CCDC129 ENSG00000180347 CDS Human protein_coding chr7:31592725 chr7:31592728 synonymous SNV . 0 24 hm5C_associated_SNPs_84849 0 0 0 0 1 CCDC129 chr7:31592801 5'GT 31592801 Upstream 74bp
chr19 48902063 48902063 1 + G A rs545376716 48902060 + 48902040 48902080 41 GACTTCCTGTCGGCGCAGACCTCGCTGCCCATCGTGGCCGT GACTTCCTGTCGGCGCAGACCTCACTGCCCATCGTGGCCGT < 41bp 0.71594286353982 0.470940869695922 0.43998367 0.18826216 prediction 0.431885727079639 Functional Loss - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48902060 chr19:48902063 synonymous SNV . 0 24 hm5C_associated_SNPs_84851 0 0 0 0 1 GRIN2D chr19:48902114 5'GT 48902114 Upstream 52bp
chr1 4832384 4832384 1 + A C UCEC 4832380 + 4832360 4832400 41 CTCGTCGGAACAGCCACCAGCGGAAGACCAACCAGCAGGAG CTCGTCGGAACAGCCACCAGCGGACGACCAACCAGCAGGAG < 41bp 0.715934453113999 0.302026888850042 0.8890333 0.8807125 prediction 0.431868906227997 Functional Loss - AJAP1 ENSG00000196581 CDS Human protein_coding chr1:4832380 chr1:4832384 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_84853 0 0 0 0 1 AJAP1 chr1:4832340 3'AG 4832340 Downstream 45bp
chr9 140508784 140508784 1 + G A PAAD 140508781 + 140508761 140508801 41 ATAAGGCCAAGCGCTGGATCCACGACGTACGGACCATTGCG ATAAGGCCAAGCGCTGGATCCACAACGTACGGACCATTGCG < 41bp 0.810977387163768 0.595043487115255 0.4331475 0.2081646 prediction 0.431867800097028 Functional Loss - ARRDC1 ENSG00000197070 CDS Human protein_coding chr9:140508781 chr9:140508784 nonsynonymous SNV 0.707 3 24 hm5C_associated_SNPs_84855 0 0 1 0 1 ARRDC1 chr9:140508751 3'AG 140508751 Downstream 34bp
chr22 38040958 38040958 1 + G A rs139912442 38040955 + 38040935 38040975 41 TGGCTGAGCTGAGGGAGAACCACGGCCAAGCAGGTGGGGAC TGGCTGAGCTGAGGGAGAACCACAGCCAAGCAGGTGGGGAC < 41bp 0.802903953685795 0.586970652795603 0.88591045 0.5682358 prediction 0.431866601780384 Functional Loss - SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38040955 chr22:38040958 nonsynonymous SNV 0.575 0 24 hm5C_associated_SNPs_84857 0 0 1 0 2 SH3BP1 chr22:38040877 3'AG 38040877 Downstream 82bp
chr22 38040958 38040958 1 + G A rs139912442 38040955 + 38040935 38040975 41 TGGCTGAGCTGAGGGAGAACCACGGCCAAGCAGGTGGGGAC TGGCTGAGCTGAGGGAGAACCACAGCCAAGCAGGTGGGGAC < 41bp 0.802903953685795 0.586970652795603 0.88591045 0.5682358 prediction 0.431866601780384 Functional Loss - SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38040955 chr22:38040958 nonsynonymous SNV 0.575 0 24 hm5C_associated_SNPs_84857 0 0 1 0 2 SH3BP1 chr22:38040967 5'GT 38040967 Upstream 10bp
chr9 34649475 34649475 1 + C T THCA 34649473 + 34649453 34649493 41 GCTGCACGCTCATTACTACCCTCCGCTCCTGCGCTCTGCCA GCTGCACGCTCATTACTACCCTTCGCTCCTGCGCTCTGCCA < 41bp 0.715933238710688 0.422977865437949 0.10935238 0.046735853 prediction 0.431866477421376 Functional Loss - GALT ENSG00000213930 CDS Human protein_coding chr9:34649473 chr9:34649475 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_84858 0 0 1 0 2 GALT chr9:34649407 3'AG 34649407 Downstream 69bp
chr9 34649475 34649475 1 + C T THCA 34649473 + 34649453 34649493 41 GCTGCACGCTCATTACTACCCTCCGCTCCTGCGCTCTGCCA GCTGCACGCTCATTACTACCCTTCGCTCCTGCGCTCTGCCA < 41bp 0.715933238710688 0.422977865437949 0.10935238 0.046735853 prediction 0.431866477421376 Functional Loss - GALT ENSG00000213930 CDS Human protein_coding chr9:34649473 chr9:34649475 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_84858 0 0 1 0 2 GALT chr9:34649561 5'GT 34649561 Upstream 87bp
chr20 34519335 34519335 1 + C T UCEC 34519332 + 34519312 34519352 41 TGCAGAGAGTGATTGAGGTTCTGCATGGCCTGCAGCTCAAG TGCAGAGAGTGATTGAGGTTCTGTATGGCCTGCAGCTCAAG < 41bp 0.736657924459596 0.520726215021092 0.192952 0.18439281 prediction 0.431863418877009 Functional Loss - PHF20 ENSG00000025293 CDS Human protein_coding chr20:34519332 chr20:34519335 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_84859 0 0 1 0 1 PHF20 chr20:34519366 5'GT 34519366 Upstream 32bp
chr16 27445751 27445751 1 + A C OV 27445750 + 27445730 27445770 41 GAAATGTGGAACCTCCACCCCAGCACGCTCACCCTTACCTG GAAATGTGGAACCTCCACCCCCGCACGCTCACCCTTACCTG < 41bp 0.715929936267777 0.447995512353061 0.22609371 0.07255322 prediction 0.431859872535554 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27445750 chr16:27445751 nonsynonymous SNV 0.185 1 22 hm5C_associated_SNPs_84860 0 0 0 0 2 IL21R chr16:27445668 3'AG 27445668 Downstream 84bp
chr16 27445751 27445751 1 + A C OV 27445750 + 27445730 27445770 41 GAAATGTGGAACCTCCACCCCAGCACGCTCACCCTTACCTG GAAATGTGGAACCTCCACCCCCGCACGCTCACCCTTACCTG < 41bp 0.715929936267777 0.447995512353061 0.22609371 0.07255322 prediction 0.431859872535554 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27445750 chr16:27445751 nonsynonymous SNV 0.185 1 22 hm5C_associated_SNPs_84860 0 0 0 0 2 IL21R chr16:27445770 5'GT 27445770 Upstream 20bp
chr9 2115859 2115859 1 + A C BLCA 2115858 + 2115838 2115878 41 ACCGAGCTCACCGCATCGGGCAGCAGAACGAGGTCCGGGTA ACCGAGCTCACCGCATCGGGCCGCAGAACGAGGTCCGGGTA < 41bp 0.823954718424746 0.608028126559675 0.44664586 0.26490206 prediction 0.431853183730142 Functional Loss - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2115858 chr9:2115859 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_84863 0 0 1 0 1 SMARCA2 chr9:2115822 3'AG 2115822 Downstream 38bp
chr9 100845196 100845196 1 + C T STAD 100845193 + 100845173 100845213 41 ATTCTAACAATGGACATGCTCACCGTGAAGGTGGGTGAGCC ATTCTAACAATGGACATGCTCACTGTGAAGGTGGGTGAGCC < 41bp 0.718743158195685 0.502820050865911 0.059341013 0.04048428 prediction 0.431846214659548 Functional Loss - NANS ENSG00000095380 CDS Human protein_coding chr9:100845193 chr9:100845196 synonymous SNV . 0 24 hm5C_associated_SNPs_84866 0 0 1 0 1 NANS chr9:100845128 3'AG 100845128 Downstream 69bp
chr1 16352685 16352685 1 + G A SKCM 16352682 + 16352662 16352702 41 GATATCAAGAACTTTGGGGCCAAGGTGGTGGGCCTCTCCTG GATATCAAGAACTTTGGGGCCAAAGTGGTGGGCCTCTCCTG < 41bp 0.715918053783589 0.470990496643151 0.91756487 0.89039075 prediction 0.431836107567178 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16352682 chr1:16352685 synonymous SNV . 0 24 hm5C_associated_SNPs_84870 0 0 0 0 2 CLCNKA chr1:16352603 3'AG 16352603 Downstream 83bp
chr1 16352685 16352685 1 + G A SKCM 16352682 + 16352662 16352702 41 GATATCAAGAACTTTGGGGCCAAGGTGGTGGGCCTCTCCTG GATATCAAGAACTTTGGGGCCAAAGTGGTGGGCCTCTCCTG < 41bp 0.715918053783589 0.470990496643151 0.91756487 0.89039075 prediction 0.431836107567178 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16352682 chr1:16352685 synonymous SNV . 0 24 hm5C_associated_SNPs_84870 0 0 0 0 2 CLCNKA chr1:16352742 5'GT 16352742 Upstream 58bp
chr8 22865619 22865619 1 - C T STAD 22865622 - 22865602 22865642 41 TTGTGTCCTCAGCCTTACCTCCCGGGTGGAGCTCTCCACAA TTGTGTCCTCAGCCTTACCTCCCAGGTGGAGCTCTCCACAA < 41bp 0.715913218967792 0.46514301456335 0.36822778 0.08761963 prediction 0.431826437935585 Functional Loss - RHOBTB2 ENSG00000008853 CDS Human antisense chr8:22865622 chr8:22865619 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_84873 0 0 1 0 1 RHOBTB2 chr8:22865630 3'AG 22865630 Downstream 12bp
chr20 35835810 35835810 1 + T C GBM 35835809 + 35835789 35835829 41 CGTGCCAGTTGTGGTTGTGCCTGAGGGCTCTGCTTCCGACA CGTGCCAGTTGTGGTTGTGCCCGAGGGCTCTGCTTCCGACA < 41bp 0.807424611347457 0.591512578862691 0.1106959 0.31515986 prediction 0.431824064969534 Functional Loss - RPN2 ENSG00000118705 CDS Human protein_coding chr20:35835809 chr20:35835810 synonymous SNV . 0 22 hm5C_associated_SNPs_84874 0 0 1 0 1 RPN2 chr20:35835852 5'GT 35835852 Upstream 43bp
chrX 153677614 153677614 1 + G A UCEC 153677611 + 153677591 153677631 41 AGCAGTTCCTGCAGAAGGCGCTCGAGATCCTTCGGAAAGAC AGCAGTTCCTGCAGAAGGCGCTCAAGATCCTTCGGAAAGAC < 41bp 0.803933556972618 0.588026221858276 0.060955197 0.044702202 prediction 0.431814670228685 Functional Loss - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153677611 chrX:153677614 nonsynonymous SNV 0.363 2 24 hm5C_associated_SNPs_84880 0 0 1 0 2 FAM50A chrX:153677569 3'AG 153677569 Downstream 46bp
chrX 153677614 153677614 1 + G A UCEC 153677611 + 153677591 153677631 41 AGCAGTTCCTGCAGAAGGCGCTCGAGATCCTTCGGAAAGAC AGCAGTTCCTGCAGAAGGCGCTCAAGATCCTTCGGAAAGAC < 41bp 0.803933556972618 0.588026221858276 0.060955197 0.044702202 prediction 0.431814670228685 Functional Loss - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153677611 chrX:153677614 nonsynonymous SNV 0.363 2 24 hm5C_associated_SNPs_84880 0 0 1 0 2 FAM50A chrX:153677645 5'GT 153677645 Upstream 32bp
chr18 8813163 8813163 1 + G A rs567434652 8813160 + 8813140 8813180 41 ACCGGGAGAAGGTGGAACTTCTCGACCGCCTGGACAGAGAT ACCGGGAGAAGGTGGAACTTCTCAACCGCCTGGACAGAGAT < 41bp 0.790915901418718 0.575010809916877 0.6587434 0.39704973 prediction 0.43181018300368 Functional Loss - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8813160 chr18:8813163 nonsynonymous SNV 0.918 0 24 hm5C_associated_SNPs_84882 0 0 1 0 1 MTCL1 chr18:8813231 5'GT 8813231 Upstream 69bp
chrX 3002631 3002631 1 + G A SKCM 3002628 + 3002608 3002648 41 ACTGCCTCCTCATGCGGGGGCACGAGATCACGGAGCAGCCC ACTGCCTCCTCATGCGGGGGCACAAGATCACGGAGCAGCCC < 41bp 0.814715048130915 0.598810689274727 0.47185773 0.44276875 prediction 0.431808717712376 Functional Loss - ARSF ENSG00000062096 CDS Human protein_coding chrX:3002628 chrX:3002631 nonsynonymous SNV 0.027 1 24 hm5C_associated_SNPs_84883 0 0 0 0 1 ARSF chrX:3002707 5'GT 3002707 Upstream 77bp
chr10 121203198 121203198 1 + G A SKCM 121203195 + 121203175 121203215 41 AAGCGGGAGGAGGTGGACCGCCGGGTCCTGGAGACGGAGGA AAGCGGGAGGAGGTGGACCGCCGAGTCCTGGAGACGGAGGA < 41bp 0.798283497728183 0.58238043160944 0.61520016 0.3501296 prediction 0.431806132237486 Functional Loss - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121203195 chr10:121203198 synonymous SNV . 0 24 hm5C_associated_SNPs_84884 0 0 1 0 1 GRK5 chr10:121203264 5'GT 121203264 Upstream 67bp
chr15 99874192 99874192 1 + C T SKCM 99874190 + 99874170 99874210 41 CCAATCGTTTGCTAACTTTACCCGAGAGGCTTCACATGTGC CCAATCGTTTGCTAACTTTACCTGAGAGGCTTCACATGTGC < 41bp 0.715895889014949 0.421782051204342 0.15959898 0.14463308 prediction 0.431791778029897 Functional Loss - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99874190 chr15:99874192 synonymous SNV . 0 23 hm5C_associated_SNPs_84886 0 0 0 0 1 LRRC28 chr15:99874128 3'AG 99874128 Downstream 65bp
chr12 100784796 100784796 1 + G A SKCM 100784793 + 100784773 100784813 41 TTCCAGACAGCACAGTTTAACTGGGATCCAGAAACAGTGGG TTCCAGACAGCACAGTTTAACTGAGATCCAGAAACAGTGGG < 41bp 0.73412025501871 0.518233158686367 0.39141035 0.1923495 prediction 0.431774192664685 Functional Loss - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100784793 chr12:100784796 stopgain 1.000 1 24 hm5C_associated_SNPs_84893 0 0 1 0 1 SLC17A8 chr12:100784779 3'AG 100784779 Downstream 18bp
chr1 183187562 183187562 1 + G C OV 183187558 + 183187538 183187578 41 GACTGTGACCCAGCTGGCATCGCAGGGCCCTGTGACGCGGG GACTGTGACCCAGCTGGCATCGCACGGCCCTGTGACGCGGG < 41bp 0.715885607352962 0.40640532344245 0.9335482 0.37953687 prediction 0.431771214705924 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183187558 chr1:183187562 nonsynonymous SNV 0.987 3 25 hm5C_associated_SNPs_84895 0 0 0 0 2 LAMC2 chr1:183187525 3'AG 183187525 Downstream 38bp
chr1 183187562 183187562 1 + G C OV 183187558 + 183187538 183187578 41 GACTGTGACCCAGCTGGCATCGCAGGGCCCTGTGACGCGGG GACTGTGACCCAGCTGGCATCGCACGGCCCTGTGACGCGGG < 41bp 0.715885607352962 0.40640532344245 0.9335482 0.37953687 prediction 0.431771214705924 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183187558 chr1:183187562 nonsynonymous SNV 0.987 3 25 hm5C_associated_SNPs_84895 0 0 0 0 2 LAMC2 chr1:183187623 5'GT 183187623 Upstream 62bp
chr4 5800472 5800472 1 + C T PAAD 5800470 + 5800450 5800490 41 GCAGGCGCTGCTGGTGCATGCACGGAATGCAGCCACCAAGA GCAGGCGCTGCTGGTGCATGCATGGAATGCAGCCACCAAGA < 41bp 0.823308826034874 0.607426991815167 0.23674205 0.2589059 prediction 0.431763668439413 Functional Loss - EVC ENSG00000072840 CDS Human protein_coding chr4:5800470 chr4:5800472 nonsynonymous SNV 0.004 3 23 hm5C_associated_SNPs_84897 0 0 0 0 1 EVC chr4:5800519 5'GT 5800519 Upstream 48bp
chr22 25019805 25019805 1 + C T SKCM 25019803 + 25019783 25019823 41 AGCAGAAGGGCCTGACGTACCACCGCATCGTAGAGGCTTTC AGCAGAAGGGCCTGACGTACCATCGCATCGTAGAGGCTTTC < 41bp 0.715877146249421 0.439930851949118 0.16579586 0.18768823 prediction 0.431754292498841 Functional Loss - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25019803 chr22:25019805 synonymous SNV . 0 23 hm5C_associated_SNPs_84900 0 0 0 0 1 GGT1 chr22:25019883 5'GT 25019883 Upstream 79bp
chr12 53837476 53837476 1 + G T UCEC 53837473 + 53837453 53837493 41 GGACCAGCAGTGATAGTAGACAAGAAGATGCAGAAGAAAAT GGACCAGCAGTGATAGTAGACAATAAGATGCAGAAGAAAAT < 41bp 0.71587527045687 0.336353934657795 0.5244562 0.23456049 prediction 0.43175054091374 Functional Loss - PRR13 ENSG00000205352 CDS Human protein_coding chr12:53837473 chr12:53837476 stopgain 0.864 4 24 hm5C_associated_SNPs_84902 0 0 1 0 1 PRR13 chr12:53837557 5'GT 53837557 Upstream 82bp
chr11 43918805 43918805 1 + C T UCEC 43918802 + 43918782 43918822 41 TGTTAGTGGAACCGCGACTGCTCCGCAGAGCTGCTGGTATG TGTTAGTGGAACCGCGACTGCTCTGCAGAGCTGCTGGTATG < 41bp 0.715860060423103 0.495372466279078 0.060605288 0.09725529 prediction 0.431720120846206 Functional Loss - ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43918802 chr11:43918805 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_84907 0 0 1 0 2 ALKBH3 chr11:43918745 3'AG 43918745 Downstream 61bp
chr11 43918805 43918805 1 + C T UCEC 43918802 + 43918782 43918822 41 TGTTAGTGGAACCGCGACTGCTCCGCAGAGCTGCTGGTATG TGTTAGTGGAACCGCGACTGCTCTGCAGAGCTGCTGGTATG < 41bp 0.715860060423103 0.495372466279078 0.060605288 0.09725529 prediction 0.431720120846206 Functional Loss - ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43918802 chr11:43918805 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_84907 0 0 1 0 2 SEC14L1P1 chr11:43918904 5'GT 43918904 Upstream 100bp
chr17 44949940 44949940 1 + G A rs372193837 44949937 + 44949917 44949957 41 GGATTGGGCACTGCGGCAGCCCCGGCACAGGGCGGGGCCCA GGATTGGGCACTGCGGCAGCCCCAGCACAGGGCGGGGCCCA < 41bp 0.71585992272661 0.466703600729629 0.46936303 0.32351843 prediction 0.431719845453221 Functional Loss - WNT9B ENSG00000158955 CDS Human protein_coding chr17:44949937 chr17:44949940 synonymous SNV . 0 24 hm5C_associated_SNPs_84908 0 0 0 0 1 WNT9B chr17:44949883 3'AG 44949883 Downstream 58bp
chr8 84316225 84316225 1 + C T rs35504602 84316223 + 84316203 84316243 41 TTAAGAGCTGTAACACTCACCGCGAGGGTCCACGGCTTCAT TTAAGAGCTGTAACACTCACCGTGAGGGTCCACGGCTTCAT < 41bp 0.715858728939495 0.49216768352524 0.20875984 0.19715637 prediction 0.43171745787899 Functional Loss - LINC01419 ENSG00000253898 ncRNA_exonic Human lincRNA chr8:84316223 chr8:84316225 . . 0 23 hm5C_associated_SNPs_84911 0 0 0 0 1 LINC01419 chr8:84316304 5'GT 84316304 Upstream 80bp
chr3 10276196 10276196 1 + G A rs56197044 10276193 + 10276173 10276213 41 AGCACCGCCTCGCTCTGCTCCAGGAAGACGGGCGTGGAGAA AGCACCGCCTCGCTCTGCTCCAGAAAGACGGGCGTGGAGAA < 41bp 0.81067529735323 0.594817505065765 0.61097777 0.3596589 prediction 0.43171558457493 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10276193 chr3:10276196 synonymous SNV . 0 24 hm5C_associated_SNPs_84912 0 0 0 0 1 IRAK2 chr3:10276143 3'AG 10276143 Downstream 54bp
chr19 50885365 50885365 1 + C T UCEC 50885363 + 50885343 50885383 41 CCAACGTGCAGGAGCCGGGCCGCGTGGAGGCGTTGCAGCAG CCAACGTGCAGGAGCCGGGCCGTGTGGAGGCGTTGCAGCAG < 41bp 0.715854541315864 0.460696475843192 0.5937647 0.4983833 prediction 0.431709082631728 Functional Loss - NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50885363 chr19:50885365 synonymous SNV . 0 23 hm5C_associated_SNPs_84916 0 0 0 0 1 NR1H2 chr19:50885431 5'GT 50885431 Upstream 67bp
chr19 55019149 55019149 1 + G T SARC 55019145 + 55019125 55019165 41 CATCTCGGCTGAGCCAGGCACTGTGATCTCCCCGGGGAGCC CATCTCGGCTGAGCCAGGCACTGTTATCTCCCCGGGGAGCC < 41bp 0.720290894232154 0.504439078878921 0.31054753 0.1564664 prediction 0.431703630706466 Functional Loss - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019145 chr19:55019149 synonymous SNV . 0 25 hm5C_associated_SNPs_84918 0 0 0 1 1 LAIR2 chr19:55019106 3'AG 55019106 Downstream 44bp
chr16 67645904 67645904 1 + C T COAD 67645901 + 67645881 67645921 41 TTTGCAGTTACACGTGTCCACGGCGTTCAAATTTGGATCGT TTTGCAGTTACACGTGTCCACGGTGTTCAAATTTGGATCGT < 41bp 0.732731411508053 0.516881701629844 0.16921511 0.080991566 prediction 0.431699419756418 Functional Loss - CTCF ENSG00000102974 CDS Human protein_coding chr16:67645901 chr16:67645904 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_84920 0 0 1 0 1 CTCF chr16:67645854 3'AG 67645854 Downstream 51bp
chr4 71824735 71824735 1 + C T BLCA 71824733 + 71824713 71824753 41 TGCTTCCTGAAGGGGAAGATCTCAATGAATGGGTTGCAGTT TGCTTCCTGAAGGGGAAGATCTTAATGAATGGGTTGCAGTT < 41bp 0.715845000855217 0.414407024670926 0.887292 0.2650988 prediction 0.431690001710434 Functional Loss - MOB1B ENSG00000173542 CDS Human protein_coding chr4:71824733 chr4:71824735 synonymous SNV . 0 23 hm5C_associated_SNPs_84923 0 0 1 0 1 MOB1B chr4:71824757 5'GT 71824757 Upstream 23bp
chr19 41442030 41442030 1 + C T COAD 41442028 + 41442008 41442048 41 GAGAAATATGGGGACGTCTTCACGGTACACCTGGGACCGAG GAGAAATATGGGGACGTCTTCATGGTACACCTGGGACCGAG < 41bp 0.785846284707298 0.570001585037493 0.7165989 0.7347908 prediction 0.43168939933961 Functional Loss - CYP2B7P ENSG00000256612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:41442028 chr19:41442030 . . 0 23 hm5C_associated_SNPs_84924 0 0 0 0 1 CYP2B7P chr19:41442002 3'AG 41442002 Downstream 29bp
chr1 115401288 115401288 1 + A C SKCM 115401287 + 115401267 115401307 41 GAAAGTAAGTTGCAAGAAAACAGAAAGATAATTGAAGCACA GAAAGTAAGTTGCAAGAAAACCGAAAGATAATTGAAGCACA < 41bp 0.780253256463655 0.564417877471412 0.35883883 0.34594536 prediction 0.431670757984487 Functional Loss - SYCP1 ENSG00000198765 CDS Human protein_coding chr1:115401287 chr1:115401288 synonymous SNV . 0 22 hm5C_associated_SNPs_84928 0 0 0 1 1 SYCP1 chr1:115401332 5'GT 115401332 Upstream 45bp
chr1 43784988 43784988 1 + G A CESC 43784985 + 43784965 43785005 41 GATTGCAGACTTCGGCCTTTCTCGGGGAGAGGAGGTTTATG GATTGCAGACTTCGGCCTTTCTCAGGGAGAGGAGGTTTATG < 41bp 0.765016349212712 0.549186151698129 0.21667272 0.058133483 prediction 0.431660395029166 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43784985 chr1:43784988 nonsynonymous SNV 0.978 4 24 hm5C_associated_SNPs_84931 0 0 0 0 2 TIE1 chr1:43784906 3'AG 43784906 Downstream 83bp
chr1 43784988 43784988 1 + G A CESC 43784985 + 43784965 43785005 41 GATTGCAGACTTCGGCCTTTCTCGGGGAGAGGAGGTTTATG GATTGCAGACTTCGGCCTTTCTCAGGGAGAGGAGGTTTATG < 41bp 0.765016349212712 0.549186151698129 0.21667272 0.058133483 prediction 0.431660395029166 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43784985 chr1:43784988 nonsynonymous SNV 0.978 4 24 hm5C_associated_SNPs_84931 0 0 0 0 2 TIE1 chr1:43785019 5'GT 43785019 Upstream 32bp
chr16 3452317 3452317 1 + C T UCEC 3452315 + 3452295 3452335 41 CCTGCCCCCGGAGATCCAGGCTCGGGTCAGGCATCGATGTC CCTGCCCCCGGAGATCCAGGCTTGGGTCAGGCATCGATGTC < 41bp 0.823044126724547 0.607222405989537 0.33102643 0.29367512 prediction 0.431643441470019 Functional Loss - ZNF174 ENSG00000103343 CDS Human protein_coding chr16:3452315 chr16:3452317 nonsynonymous SNV 0.988 0 23 hm5C_associated_SNPs_84934 0 0 0 0 1 ZNF174 chr16:3452406 5'GT 3452406 Upstream 90bp
chr16 335185 335185 1 + G A rs45503892 335182 + 335162 335202 41 ACACACAGCATGCGCCTGGTCACGGAGTTCAACAGCCAGGT ACACACAGCATGCGCCTGGTCACAGAGTTCAACAGCCAGGT < 41bp 0.809385036397549 0.59356708733386 0.12455782 0.088937104 prediction 0.431635898127378 Functional Loss - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:335182 chr16:335185 synonymous SNV . 0 24 hm5C_associated_SNPs_84937 0 0 0 0 1 PDIA2 chr16:335200 5'GT 335200 Upstream 16bp
chr20 43538950 43538950 1 + T C COAD 43538949 + 43538929 43538969 41 CGGCGCTCGCTGGGCTACGCCTACATCAACTTCCAGCAGCC CGGCGCTCGCTGGGCTACGCCCACATCAACTTCCAGCAGCC < 41bp 0.788423935983083 0.572611774240038 0.8934192 0.068064004 prediction 0.431624323486091 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43538949 chr20:43538950 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_84940 0 0 1 0 1 PABPC1L chr20:43538977 5'GT 43538977 Upstream 28bp
chr3 50615293 50615293 1 + C T COAD 50615291 + 50615271 50615311 41 ACAGGATTTGGATCATCCACCTCGACATGACCTCAGGTACC ACAGGATTTGGATCATCCACCTTGACATGACCTCAGGTACC < 41bp 0.715811043550686 0.435164683108219 0.52561367 0.1685684 prediction 0.431622087101372 Functional Loss - HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50615291 chr3:50615293 synonymous SNV . 0 23 hm5C_associated_SNPs_84942 0 0 1 0 2 HEMK1 chr3:50615257 3'AG 50615257 Downstream 37bp
chr3 50615293 50615293 1 + C T COAD 50615291 + 50615271 50615311 41 ACAGGATTTGGATCATCCACCTCGACATGACCTCAGGTACC ACAGGATTTGGATCATCCACCTTGACATGACCTCAGGTACC < 41bp 0.715811043550686 0.435164683108219 0.52561367 0.1685684 prediction 0.431622087101372 Functional Loss - HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50615291 chr3:50615293 synonymous SNV . 0 23 hm5C_associated_SNPs_84942 0 0 1 0 2 HEMK1 chr3:50615306 5'GT 50615306 Upstream 14bp
chr8 22021462 22021462 1 + G A LUAD 22021459 + 22021439 22021479 41 AGCTGGGCCAGGCAGAGGGGCGAGATGCAGGCTCAGCACCC AGCTGGGCCAGGCAGAGGGGCGAAATGCAGGCTCAGCACCC < 41bp 0.810937725470263 0.595130237619539 0.9114157 0.8113991 prediction 0.431614975701447 Functional Loss - SFTPC ENSG00000168484 CDS Human protein_coding chr8:22021459 chr8:22021462 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_84944 0 0 0 0 3 SFTPC chr8:22021396 3'AG 22021396 Downstream 67bp
chr8 22021462 22021462 1 + G A LUAD 22021459 + 22021439 22021479 41 AGCTGGGCCAGGCAGAGGGGCGAGATGCAGGCTCAGCACCC AGCTGGGCCAGGCAGAGGGGCGAAATGCAGGCTCAGCACCC < 41bp 0.810937725470263 0.595130237619539 0.9114157 0.8113991 prediction 0.431614975701447 Functional Loss - SFTPC ENSG00000168484 CDS Human protein_coding chr8:22021459 chr8:22021462 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_84944 0 0 0 0 3 SFTPC chr8:22021414 3'AG 22021414 Downstream 49bp
chr8 22021462 22021462 1 + G A LUAD 22021459 + 22021439 22021479 41 AGCTGGGCCAGGCAGAGGGGCGAGATGCAGGCTCAGCACCC AGCTGGGCCAGGCAGAGGGGCGAAATGCAGGCTCAGCACCC < 41bp 0.810937725470263 0.595130237619539 0.9114157 0.8113991 prediction 0.431614975701447 Functional Loss - SFTPC ENSG00000168484 CDS Human protein_coding chr8:22021459 chr8:22021462 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_84944 0 0 0 0 3 SFTPC chr8:22021420 3'AG 22021420 Downstream 43bp
chr1 161641233 161641233 1 + T C THCA 161641232 + 161641212 161641252 41 AGCCCCAGTGGATCAACGTGCTCCAGGAGGACTCTGTGACT AGCCCCAGTGGATCAACGTGCCCCAGGAGGACTCTGTGACT < 41bp 0.843223209563079 0.627417269786413 0.5887744 0.12068209 prediction 0.431611879553333 Functional Loss - FCGR2B ENSG00000072694 CDS Human protein_coding chr1:161641232 chr1:161641233 nonsynonymous SNV 0.451 3 22 hm5C_associated_SNPs_84945 0 0 0 0 2 FCGR2B chr1:161641182 3'AG 161641182 Downstream 52bp
chr1 161641233 161641233 1 + T C THCA 161641232 + 161641212 161641252 41 AGCCCCAGTGGATCAACGTGCTCCAGGAGGACTCTGTGACT AGCCCCAGTGGATCAACGTGCCCCAGGAGGACTCTGTGACT < 41bp 0.843223209563079 0.627417269786413 0.5887744 0.12068209 prediction 0.431611879553333 Functional Loss - FCGR2B ENSG00000072694 CDS Human protein_coding chr1:161641232 chr1:161641233 nonsynonymous SNV 0.451 3 22 hm5C_associated_SNPs_84945 0 0 0 0 2 FCGR2B chr1:161641185 3'AG 161641185 Downstream 49bp
chr7 23731179 23731179 1 + G T SARC 23731176 + 23731156 23731196 41 GATTAACTGGTTTCAGCTCGCTGGCGGAAGGCTACATGCGG GATTAACTGGTTTCAGCTCGCTGTCGGAAGGCTACATGCGG < 41bp 0.715805409694631 0.33770206578042 0.4302603 0.045036197 prediction 0.431610819389263 Functional Loss - FAM221A ENSG00000188732 CDS Human protein_coding chr7:23731176 chr7:23731179 nonsynonymous SNV 0.935 1 24 hm5C_associated_SNPs_84946 0 0 0 0 1 FAM221A chr7:23731215 5'GT 23731215 Upstream 37bp
chrX 69645920 69645920 1 + C T UCEC 69645917 + 69645897 69645937 41 TCTAGGTCCTGGCCCTGCTCCTGCGGCTTTGTAGACAGCCC TCTAGGTCCTGGCCCTGCTCCTGTGGCTTTGTAGACAGCCC < 41bp 0.731690702566728 0.515893536324414 0.30687332 0.18248463 prediction 0.431594332484626 Functional Loss - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69645917 chrX:69645920 nonsynonymous SNV 0.946 0 24 hm5C_associated_SNPs_84949 0 0 0 0 2 GDPD2 chrX:69645902 3'AG 69645902 Downstream 19bp
chrX 69645920 69645920 1 + C T UCEC 69645917 + 69645897 69645937 41 TCTAGGTCCTGGCCCTGCTCCTGCGGCTTTGTAGACAGCCC TCTAGGTCCTGGCCCTGCTCCTGTGGCTTTGTAGACAGCCC < 41bp 0.731690702566728 0.515893536324414 0.30687332 0.18248463 prediction 0.431594332484626 Functional Loss - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69645917 chrX:69645920 nonsynonymous SNV 0.946 0 24 hm5C_associated_SNPs_84949 0 0 0 0 2 GDPD2 chrX:69645961 5'GT 69645961 Upstream 42bp
chr15 83791524 83791524 1 + G A COAD 83791521 + 83791501 83791541 41 TTAAATAGGGAAGTATGGAACACGAATTTGCCCTGCTTTTT TTAAATAGGGAAGTATGGAACACAAATTTGCCCTGCTTTTT < 41bp 0.754282102707828 0.538487032490381 0.15158507 0.054823726 prediction 0.431590140434895 Functional Loss - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83791521 chr15:83791524 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_84950 0 0 0 0 1 TM6SF1 chr15:83791509 3'AG 83791509 Downstream 16bp
chr6 86199314 86199314 1 + A C rs138876213 86199310 + 86199290 86199330 41 CGGTCGCCCATTGATGAACGCAACAATGGTATGCTCCCAGG CGGTCGCCCATTGATGAACGCAACCATGGTATGCTCCCAGG < 41bp 0.715793933163671 0.293229769643554 0.08830562 0.05647126 prediction 0.431587866327341 Functional Loss - NT5E ENSG00000135318 CDS Human protein_coding chr6:86199310 chr6:86199314 nonsynonymous SNV 0.311 3 25 hm5C_associated_SNPs_84951 0 0 0 0 1 NT5E chr6:86199317 5'GT 86199317 Upstream 4bp
chr14 24526206 24526206 1 + T C rs45484702 24526205 + 24526185 24526225 41 CCTGGACCTGAGCAAGAATCCTGGGCTCCTCGCCACGGATG CCTGGACCTGAGCAAGAATCCCGGGCTCCTCGCCACGGATG < 41bp 0.79440073726749 0.578607289135213 0.46738183 0.84121513 prediction 0.431586896264555 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24526205 chr14:24526206 synonymous SNV . 0 22 hm5C_associated_SNPs_84952 0 0 0 0 2 CARMIL3 chr14:24526124 3'AG 24526124 Downstream 83bp
chr14 24526206 24526206 1 + T C rs45484702 24526205 + 24526185 24526225 41 CCTGGACCTGAGCAAGAATCCTGGGCTCCTCGCCACGGATG CCTGGACCTGAGCAAGAATCCCGGGCTCCTCGCCACGGATG < 41bp 0.79440073726749 0.578607289135213 0.46738183 0.84121513 prediction 0.431586896264555 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24526205 chr14:24526206 synonymous SNV . 0 22 hm5C_associated_SNPs_84952 0 0 0 0 2 CARMIL3 chr14:24526233 5'GT 24526233 Upstream 28bp
chr13 111368348 111368348 1 + G C LUAD 111368347 + 111368327 111368367 41 AGGGTGGGGCCGCGCGTGGCCGTGGAAACGTGAGTGACTGG AGGGTGGGGCCGCGCGTGGCCCTGGAAACGTGAGTGACTGG < 41bp 0.715786580556685 0.411928429878971 0.34055477 0.21880925 prediction 0.43157316111337 Functional Loss - ING1 ENSG00000153487 CDS Human protein_coding chr13:111368347 chr13:111368348 synonymous SNV . 0 22 hm5C_associated_SNPs_84953 0 0 1 0 1 ING1 chr13:111368355 5'GT 111368355 Upstream 8bp
chr3 184001722 184001722 1 + G A LGG 184001719 + 184001699 184001739 41 CCCCAGGACCAGCGGCGCGACGAGGAGAAGATCTACCACAA CCCCAGGACCAGCGGCGCGACGAAGAGAAGATCTACCACAA < 41bp 0.797424695450167 0.581638534684472 0.91381764 0.8697798 prediction 0.431572321531391 Functional Loss - ECE2 ENSG00000145194 CDS Human protein_coding chr3:184001719 chr3:184001722 synonymous SNV . 0 24 hm5C_associated_SNPs_84954 0 0 0 0 1 ECE2 chr3:184001761 5'GT 184001761 Upstream 40bp
chr2 55155538 55155538 1 + C T UCEC 55155536 + 55155516 55155556 41 CACAATGACTCTGTGCTGCTCACGGTGGGCGGCGCCGACAC CACAATGACTCTGTGCTGCTCATGGTGGGCGGCGCCGACAC < 41bp 0.71578139029935 0.434619729701574 0.29008478 0.33640012 prediction 0.4315627805987 Functional Loss - EML6 ENSG00000214595 CDS Human protein_coding chr2:55155536 chr2:55155538 nonsynonymous SNV 0.339 2 23 hm5C_associated_SNPs_84957 0 0 0 0 1 EML6 chr2:55155450 3'AG 55155450 Downstream 89bp
chr19 50905323 50905323 1 + C T COAD 50905321 + 50905301 50905341 41 TGGCCATCAGCCGGGACAGTCGCGGGGGGAGGGAGCTGACT TGGCCATCAGCCGGGACAGTCGTGGGGGGAGGGAGCTGACT < 41bp 0.832308247397092 0.616530262025902 0.92644584 0.9233097 prediction 0.43155597074238 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905321 chr19:50905323 synonymous SNV . 0 23 hm5C_associated_SNPs_84960 1 0 1 0 1 POLD1 chr19:50905256 3'AG 50905256 Downstream 68bp
chr4 169812155 169812155 1 + G A SKCM 169812152 + 169812132 169812172 41 GCACAAAGGATGCTGTTATTCAAGACCTGGAACGAAAACTT GCACAAAGGATGCTGTTATTCAAAACCTGGAACGAAAACTT < 41bp 0.715775904893625 0.498883898116572 0.27011055 0.14965653 prediction 0.431551809787251 Functional Loss - PALLD ENSG00000129116 CDS Human protein_coding chr4:169812152 chr4:169812155 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_84961 0 0 0 0 2 PALLD chr4:169812073 3'AG 169812073 Downstream 83bp
chr4 169812155 169812155 1 + G A SKCM 169812152 + 169812132 169812172 41 GCACAAAGGATGCTGTTATTCAAGACCTGGAACGAAAACTT GCACAAAGGATGCTGTTATTCAAAACCTGGAACGAAAACTT < 41bp 0.715775904893625 0.498883898116572 0.27011055 0.14965653 prediction 0.431551809787251 Functional Loss - PALLD ENSG00000129116 CDS Human protein_coding chr4:169812152 chr4:169812155 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_84961 0 0 0 0 2 PALLD chr4:169812208 5'GT 169812208 Upstream 54bp
chr8 21905490 21905490 1 + C T COAD 21905487 + 21905467 21905507 41 CCCAGCGGGAAGAGCAAAGACTGCGTGTTCACGGAGATCGT CCCAGCGGGAAGAGCAAAGACTGTGTGTTCACGGAGATCGT < 41bp 0.741674394999793 0.525899326617436 0.20571458 0.16077614 prediction 0.431550136764714 Functional Loss - FGF17 ENSG00000158815 CDS Human protein_coding chr8:21905487 chr8:21905490 synonymous SNV . 0 24 hm5C_associated_SNPs_84963 0 0 1 0 1 FGF17 chr8:21905467 3'AG 21905467 Downstream 24bp
chr1 52231512 52231512 1 + C T LUSC 52231509 + 52231489 52231529 41 CCTAGGCAGTGGCCATTCACCACCGAGTAGCAGTCTCACTT CCTAGGCAGTGGCCATTCACCACTGAGTAGCAGTCTCACTT < 41bp 0.732899884157988 0.517126182786215 0.23849028 0.11704689 prediction 0.431547402743546 Functional Loss - OSBPL9 ENSG00000117859 CDS Human protein_coding chr1:52231509 chr1:52231512 stopgain 0.965 3 24 hm5C_associated_SNPs_84965 0 0 1 0 1 OSBPL9 chr1:52231494 3'AG 52231494 Downstream 19bp
chr1 111032156 111032156 1 + A C rs17629863 111032155 + 111032135 111032175 41 GTGGCAACATCCTCAACATCCAGCAGGCCATTGGAGCCACT GTGGCAACATCCTCAACATCCCGCAGGCCATTGGAGCCACT < 41bp 0.803771408841593 0.588002093851467 0.059494257 0.024937958 prediction 0.431538629980253 Functional Loss - CYMP;CYMP-AS1 ENSG00000235407;ENSG00000240194 ncRNA_exonic Human other chr1:111032155 chr1:111032156 . . 0 22 hm5C_associated_SNPs_84969 0 0 0 1 1 CYMP;CYMP-AS1 chr1:111032193 5'GT 111032193 Upstream 38bp
chr1 186270782 186270782 1 + C T LUSC 186270779 + 186270759 186270799 41 GAGAGAGGGAGGGAGTGTGACTGCGACGCCCAATGTAAGAA GAGAGAGGGAGGGAGTGTGACTGTGACGCCCAATGTAAGAA < 41bp 0.740821398747004 0.525058374870846 0.3170665 0.1617319 prediction 0.431526047752316 Functional Loss - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186270779 chr1:186270782 synonymous SNV . 0 24 hm5C_associated_SNPs_84974 0 0 0 0 2 PRG4 chr1:186270724 3'AG 186270724 Downstream 59bp
chr1 186270782 186270782 1 + C T LUSC 186270779 + 186270759 186270799 41 GAGAGAGGGAGGGAGTGTGACTGCGACGCCCAATGTAAGAA GAGAGAGGGAGGGAGTGTGACTGTGACGCCCAATGTAAGAA < 41bp 0.740821398747004 0.525058374870846 0.3170665 0.1617319 prediction 0.431526047752316 Functional Loss - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186270779 chr1:186270782 synonymous SNV . 0 24 hm5C_associated_SNPs_84974 0 0 0 0 2 PRG4 chr1:186270843 5'GT 186270843 Upstream 62bp
chr11 71847146 71847146 1 + G A BRCA 71847143 + 71847123 71847163 41 ACCACAAGACACAGCCCAGCCCCGAGGACGAGCTGTATGGC ACCACAAGACACAGCCCAGCCCCAAGGACGAGCTGTATGGC < 41bp 0.804858112865461 0.589095273479685 0.19188455 0.14180541 prediction 0.431525678771551 Functional Loss - FOLR3 ENSG00000110203 CDS Human protein_coding chr11:71847143 chr11:71847146 nonsynonymous SNV 0.024 3 24 hm5C_associated_SNPs_84975 0 0 0 0 1 FOLR3 chr11:71847166 5'GT 71847166 Upstream 21bp
chr1 26497118 26497118 1 + G T SARC 26497116 + 26497096 26497136 41 TCAGGAAGAGGCGGAGAGGGCAGCGGGTATGGGATCCTATG TCAGGAAGAGGCGGAGAGGGCATCGGGTATGGGATCCTATG < 41bp 0.902519169286715 0.686757452437162 0.8536711 0.3879071 prediction 0.431523433699107 Functional Loss - ZNF593 ENSG00000142684 CDS Human protein_coding chr1:26497116 chr1:26497118 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_84976 0 0 1 0 1 ZNF593 chr1:26497066 3'AG 26497066 Downstream 53bp
chr15 45454121 45454121 1 + G C BLCA 45454117 + 45454097 45454137 41 GGGCCCTGGACCACTCGCCTCAGGGAGATCTACTCAGCCCC GGGCCCTGGACCACTCGCCTCAGGCAGATCTACTCAGCCCC < 41bp 0.715759503520776 0.416200853954348 0.94950664 0.89777356 prediction 0.431519007041552 Functional Loss - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45454117 chr15:45454121 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_84978 0 0 0 0 1 DUOX1 chr15:45454168 5'GT 45454168 Upstream 48bp
chr12 121004724 121004724 1 + C T GBM 121004722 + 121004702 121004742 41 TCTGCTTTGGGTCCCACCAGCACCGAGGGCCATGGGGCCCT TCTGCTTTGGGTCCCACCAGCATCGAGGGCCATGGGGCCCT < 41bp 0.715757860104559 0.424966100766761 0.17343354 0.12343016 prediction 0.431515720209118 Functional Loss - RNF10 ENSG00000022840 CDS Human protein_coding chr12:121004722 chr12:121004724 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_84979 0 0 1 0 2 RNF10 chr12:121004628 3'AG 121004628 Downstream 97bp
chr12 121004724 121004724 1 + C T GBM 121004722 + 121004702 121004742 41 TCTGCTTTGGGTCCCACCAGCACCGAGGGCCATGGGGCCCT TCTGCTTTGGGTCCCACCAGCATCGAGGGCCATGGGGCCCT < 41bp 0.715757860104559 0.424966100766761 0.17343354 0.12343016 prediction 0.431515720209118 Functional Loss - RNF10 ENSG00000022840 CDS Human protein_coding chr12:121004722 chr12:121004724 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_84979 0 0 1 0 2 RNF10 chr12:121004783 5'GT 121004783 Upstream 60bp
chr11 47311461 47311461 1 + G A GBM 47311458 + 47311438 47311478 41 AGGAGGTGGTGCACAGCGTGCTGGACGGCCAGGGAGTTGGC AGGAGGTGGTGCACAGCGTGCTGAACGGCCAGGGAGTTGGC < 41bp 0.715757275472985 0.478690826134115 0.30140418 0.18429956 prediction 0.43151455094597 Functional Loss - MADD ENSG00000110514 CDS Human protein_coding chr11:47311458 chr11:47311461 nonsynonymous SNV 0.982 1 24 hm5C_associated_SNPs_84980 0 0 1 0 1 MADD chr11:47311418 3'AG 47311418 Downstream 44bp
chr17 8222159 8222159 1 + C T BLCA 8222157 + 8222137 8222177 41 AGGGGGGGCGTGCTCTTTGCCTCGCGCCCCCGCTTCACCCC AGGGGGGGCGTGCTCTTTGCCTTGCGCCCCCGCTTCACCCC < 41bp 0.855084088616656 0.639333617700662 0.115152895 0.057463527 prediction 0.431500941831987 Functional Loss - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8222157 chr17:8222159 nonsynonymous SNV 0.123 0 23 hm5C_associated_SNPs_84984 0 0 0 0 2 ARHGEF15 chr17:8222068 3'AG 8222068 Downstream 92bp
chr17 8222159 8222159 1 + C T BLCA 8222157 + 8222137 8222177 41 AGGGGGGGCGTGCTCTTTGCCTCGCGCCCCCGCTTCACCCC AGGGGGGGCGTGCTCTTTGCCTTGCGCCCCCGCTTCACCCC < 41bp 0.855084088616656 0.639333617700662 0.115152895 0.057463527 prediction 0.431500941831987 Functional Loss - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8222157 chr17:8222159 nonsynonymous SNV 0.123 0 23 hm5C_associated_SNPs_84984 0 0 0 0 2 ARHGEF15 chr17:8222228 5'GT 8222228 Upstream 70bp
chr18 13621162 13621162 1 + G A UCEC 13621159 + 13621139 13621179 41 ATCATCATCGTCGTGGTGGTCACGGTGATGGTGGTGGTCAT ATCATCATCGTCGTGGTGGTCACAGTGATGGTGGTGGTCAT < 41bp 0.748344125830693 0.532594898904591 0.484933 0.39554667 prediction 0.431498453852204 Functional Loss - LDLRAD4 ENSG00000168675 CDS Human protein_coding chr18:13621159 chr18:13621162 synonymous SNV . 0 24 hm5C_associated_SNPs_84986 0 0 0 0 1 LDLRAD4 chr18:13621116 3'AG 13621116 Downstream 47bp
chr11 111178854 111178854 1 + C T COAD 111178852 + 111178832 111178872 41 CTCCTTAGACTACAGTTACTCGCCAGTGCAGCTGCCTTCAT CTCCTTAGACTACAGTTACTCGTCAGTGCAGCTGCCTTCAT < 41bp 0.856827359165119 0.641081653958103 0.16625267 0.08541766 prediction 0.431491410414032 Functional Loss - COLCA2 ENSG00000214290 CDS Human protein_coding chr11:111178852 chr11:111178854 nonsynonymous SNV 0.010 0 23 hm5C_associated_SNPs_84989 0 0 0 0 1 COLCA2 chr11:111178794 3'AG 111178794 Downstream 61bp
chr1 175049360 175049360 1 + G T LUAD 175049357 + 175049337 175049377 41 GAGGATTCTCTGCTGGTGAGCTGGGAGCCCTCCAGCCAGGT GAGGATTCTCTGCTGGTGAGCTGTGAGCCCTCCAGCCAGGT < 41bp 0.715745082643708 0.303744501603708 0.79770374 0.078458756 prediction 0.431490165287417 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175049357 chr1:175049360 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_84990 0 0 0 0 1 TNN chr1:175049299 3'AG 175049299 Downstream 62bp
chr2 207346003 207346003 1 + C T GBM 207346000 + 207345980 207346020 41 TTCCAGATTGAAGCCTTCGGCTCCAAATTCATTCTTGACCT TTCCAGATTGAAGCCTTCGGCTCTAAATTCATTCTTGACCT < 41bp 0.715744897597652 0.483687521470218 0.6059546 0.30067652 prediction 0.431489795195304 Functional Loss - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207346000 chr2:207346003 synonymous SNV . 0 24 hm5C_associated_SNPs_84991 0 0 0 0 2 ADAM23 chr2:207345956 3'AG 207345956 Downstream 48bp
chr2 207346003 207346003 1 + C T GBM 207346000 + 207345980 207346020 41 TTCCAGATTGAAGCCTTCGGCTCCAAATTCATTCTTGACCT TTCCAGATTGAAGCCTTCGGCTCTAAATTCATTCTTGACCT < 41bp 0.715744897597652 0.483687521470218 0.6059546 0.30067652 prediction 0.431489795195304 Functional Loss - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207346000 chr2:207346003 synonymous SNV . 0 24 hm5C_associated_SNPs_84991 0 0 0 0 2 ADAM23 chr2:207346032 5'GT 207346032 Upstream 30bp
chr3 127682210 127682210 1 + C T OV 127682207 + 127682187 127682227 41 GTGGATGGGAAACTCTATGTCTGCGGGGGATTCCATGGAGC GTGGATGGGAAACTCTATGTCTGTGGGGGATTCCATGGAGC < 41bp 0.715744223691503 0.491765569136589 0.7132137 0.604029 prediction 0.431488447383005 Functional Loss - KBTBD12 ENSG00000187715 CDS Human protein_coding chr3:127682207 chr3:127682210 synonymous SNV . 0 24 hm5C_associated_SNPs_84992 0 0 0 0 1 KBTBD12 chr3:127682229 5'GT 127682229 Upstream 20bp
chr7 21516872 21516872 1 + G A rs73685150 21516869 + 21516849 21516889 41 GATCAAGAGGTACAACCTGGCAAGAGGCTTCGAAGAGTTGC GATCAAGAGGTACAACCTGGCAAAAGGCTTCGAAGAGTTGC < 41bp 0.751712264373419 0.535968864434195 0.47781298 0.083907664 prediction 0.431486799878448 Functional Loss - SP4 ENSG00000105866 CDS Human protein_coding chr7:21516869 chr7:21516872 synonymous SNV . 0 24 hm5C_associated_SNPs_84993 0 0 0 0 1 SP4 chr7:21516925 5'GT 21516925 Upstream 54bp
chr9 82333722 82333722 1 + C T COAD 82333720 + 82333700 82333740 41 CCTCATCGGACCTGGAATCCCCCGGCATGCTCGCCAGATCA CCTCATCGGACCTGGAATCCCCTGGCATGCTCGCCAGATCA < 41bp 0.715741657245803 0.437037557363809 0.17490384 0.11655262 prediction 0.431483314491606 Functional Loss - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82333720 chr9:82333722 nonsynonymous SNV 0.520 4 23 hm5C_associated_SNPs_84996 0 0 1 0 1 TLE4 chr9:82333637 3'AG 82333637 Downstream 86bp
chr15 79186521 79186521 1 + G A UCEC 79186518 + 79186498 79186538 41 CTGAAATTCTTGCAGATCATCCCGATGCACCCATGTCCCAG CTGAAATTCTTGCAGATCATCCCAATGCACCCATGTCCCAG < 41bp 0.785447070992202 0.56970819331672 0.012723535 0.0063975155 prediction 0.431477755350964 Functional Loss - MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79186518 chr15:79186521 nonsynonymous SNV 0.989 1 24 hm5C_associated_SNPs_84998 0 0 1 0 1 MORF4L1 chr15:79186572 5'GT 79186572 Upstream 52bp
chr16 72821625 72821625 1 + C T rs201772357 72821623 + 72821603 72821643 41 GCCGCCGCCGCCGCCACCGCCGCCGCCGCCGCCACTGCCAC GCCGCCGCCGCCGCCACCGCCGTCGCCGCCGCCACTGCCAC < 41bp 0.753790735714171 0.538052094857908 0.87447053 0.73566854 prediction 0.431477281712525 Functional Loss - ZFHX3 ENSG00000140836 CDS Human protein_coding chr16:72821623 chr16:72821625 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_84999 0 0 1 0 1 ZFHX3 chr16:72821562 3'AG 72821562 Downstream 64bp
chr22 17083028 17083028 1 + C T UCEC 17083026 + 17083006 17083046 41 GAGGAGCCTGGAGCCCCGGCCCCGAGCCCCCCAGCCGCAGA GAGGAGCCTGGAGCCCCGGCCCTGAGCCCCCCAGCCGCAGA < 41bp 0.752279149724087 0.536540830852274 0.23827082 0.13589641 prediction 0.431476637743626 Functional Loss - TPTEP1 ENSG00000100181 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:17083026 chr22:17083028 . . 0 23 hm5C_associated_SNPs_85000 0 0 0 0 1 TPTEP1 chr22:17083105 5'GT 17083105 Upstream 78bp
chr19 34872421 34872421 1 + G A UCEC 34872418 + 34872398 34872438 41 CCTCAAAACATGTTCGAGTTCTGGGATGTAAGTACAAGCAC CCTCAAAACATGTTCGAGTTCTGAGATGTAAGTACAAGCAC < 41bp 0.780588328953894 0.56485731381014 0.037854463 0.036012232 prediction 0.431462030287507 Functional Loss - GPI ENSG00000105220 CDS Human protein_coding chr19:34872418 chr19:34872421 stopgain 1.000 1 24 hm5C_associated_SNPs_85006 0 0 1 0 2 GPI chr19:34872371 3'AG 34872371 Downstream 51bp
chr19 34872421 34872421 1 + G A UCEC 34872418 + 34872398 34872438 41 CCTCAAAACATGTTCGAGTTCTGGGATGTAAGTACAAGCAC CCTCAAAACATGTTCGAGTTCTGAGATGTAAGTACAAGCAC < 41bp 0.780588328953894 0.56485731381014 0.037854463 0.036012232 prediction 0.431462030287507 Functional Loss - GPI ENSG00000105220 CDS Human protein_coding chr19:34872418 chr19:34872421 stopgain 1.000 1 24 hm5C_associated_SNPs_85006 0 0 1 0 2 GPI chr19:34872424 5'GT 34872424 Upstream 4bp
chr1 171958194 171958194 1 + G A SKCM 171958191 + 171958171 171958211 41 GAAATGATTATGCAGTTCATCACGAGGGAGAACTGTCTGAT GAAATGATTATGCAGTTCATCACAAGGGAGAACTGTCTGAT < 41bp 0.724196616107797 0.508467222582886 0.3393376 0.26330483 prediction 0.431458787049822 Functional Loss - DNM3 ENSG00000197959 CDS Human protein_coding chr1:171958191 chr1:171958194 synonymous SNV . 0 24 hm5C_associated_SNPs_85009 0 0 0 0 1 DNM3 chr1:171958288 5'GT 171958288 Upstream 95bp
chr12 7065701 7065701 1 + C T SKCM 7065698 + 7065678 7065718 41 CAGGAGAACAGCCGTGTCATCGTCATGACCACCCGAGAGGT CAGGAGAACAGCCGTGTCATCGTTATGACCACCCGAGAGGT < 41bp 0.727037958854339 0.511309537483911 0.18154302 0.15315798 prediction 0.431456842740855 Functional Loss - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7065698 chr12:7065701 synonymous SNV . 0 24 hm5C_associated_SNPs_85010 0 0 0 0 1 PTPN6 chr12:7065731 5'GT 7065731 Upstream 31bp
chr1 40229419 40229419 1 + C T UCEC 40229417 + 40229397 40229437 41 TCCTGGAAGCTGACGTAGAGCTCGTGCCGACGGCAGACCTG TCCTGGAAGCTGACGTAGAGCTTGTGCCGACGGCAGACCTG < 41bp 0.715727755037227 0.471382461914681 0.30874753 0.1976197 prediction 0.431455510074453 Functional Loss - BMP8B ENSG00000116985 CDS Human other chr1:40229417 chr1:40229419 nonsynonymous SNV 0.975 4 23 hm5C_associated_SNPs_85011 0 0 0 0 1 PPIE chr1:40229361 3'AG 40229361 Downstream 59bp
chr17 18344575 18344575 1 + G A GBM 18344572 + 18344552 18344592 41 TTGGACGAGCTGACCCTGGCCAGGACTGACCTGGAGATGCA TTGGACGAGCTGACCCTGGCCAGAACTGACCTGGAGATGCA < 41bp 0.724840601082385 0.509124295344807 0.8414377 0.3748768 prediction 0.431432611475155 Functional Loss - KRT16P1 ENSG00000214856 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:18344572 chr17:18344575 . . 0 24 hm5C_associated_SNPs_85015 0 0 0 0 2 KRT16P1 chr17:18344488 3'AG 18344488 Downstream 88bp
chr17 18344575 18344575 1 + G A GBM 18344572 + 18344552 18344592 41 TTGGACGAGCTGACCCTGGCCAGGACTGACCTGGAGATGCA TTGGACGAGCTGACCCTGGCCAGAACTGACCTGGAGATGCA < 41bp 0.724840601082385 0.509124295344807 0.8414377 0.3748768 prediction 0.431432611475155 Functional Loss - KRT16P1 ENSG00000214856 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:18344572 chr17:18344575 . . 0 24 hm5C_associated_SNPs_85015 0 0 0 0 2 KRT16P1 chr17:18344644 5'GT 18344644 Upstream 70bp
chr2 71908139 71908139 1 + G T STAD 71908137 + 71908117 71908157 41 CTCTGTCCCCTCAGGGCAAGCTGGAAATGACCTTGGAGATT CTCTGTCCCCTCAGGGCAAGCTTGAAATGACCTTGGAGATT < 41bp 0.7157137418556 0.422713834439913 0.38220003 0.12691236 prediction 0.4314274837112 Functional Loss - DYSF ENSG00000135636 CDS Human protein_coding chr2:71908137 chr2:71908139 synonymous SNV . 0 23 hm5C_associated_SNPs_85016 0 0 0 0 1 DYSF chr2:71908131 3'AG 71908131 Downstream 9bp
chr14 105715370 105715370 1 + A C rs587629356 105715366 + 105715346 105715386 41 CCCGCGCCGCCCACACTCGGCAACAACCACCAGGAGAGCCC CCCGCGCCGCCCACACTCGGCAACCACCACCAGGAGAGCCC < 41bp 0.715709063316606 0.329404670891774 0.23110062 0.10105726 prediction 0.431418126633212 Functional Loss - BTBD6 ENSG00000184887 CDS Human protein_coding chr14:105715366 chr14:105715370 nonsynonymous SNV 0.076 0 25 hm5C_associated_SNPs_85018 0 0 0 0 1 BTBD6 chr14:105715422 5'GT 105715422 Upstream 53bp
chr2 112740514 112740514 1 + G A CESC 112740511 + 112740491 112740531 41 TGAAGCCTCCGACTAAGCAGCAGGATGGAGAACTGGTGGGC TGAAGCCTCCGACTAAGCAGCAGAATGGAGAACTGGTGGGC < 41bp 0.821612597917235 0.605903867684935 0.6724415 0.34598345 prediction 0.431417460464601 Functional Loss - MERTK ENSG00000153208 CDS Human protein_coding chr2:112740511 chr2:112740514 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_85019 0 0 1 0 2 MERTK chr2:112740419 3'AG 112740419 Downstream 96bp
chr2 112740514 112740514 1 + G A CESC 112740511 + 112740491 112740531 41 TGAAGCCTCCGACTAAGCAGCAGGATGGAGAACTGGTGGGC TGAAGCCTCCGACTAAGCAGCAGAATGGAGAACTGGTGGGC < 41bp 0.821612597917235 0.605903867684935 0.6724415 0.34598345 prediction 0.431417460464601 Functional Loss - MERTK ENSG00000153208 CDS Human protein_coding chr2:112740511 chr2:112740514 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_85019 0 0 1 0 2 MERTK chr2:112740570 5'GT 112740570 Upstream 57bp
chr7 154667782 154667782 1 + G T LUAD 154667779 + 154667759 154667799 41 TGAGGCGGCGGCTGGGCTTGCTGGAGGAGAAGGACCAGATG TGAGGCGGCGGCTGGGCTTGCTGTAGGAGAAGGACCAGATG < 41bp 0.846924404857186 0.631215878640379 0.77945334 0.35485423 prediction 0.431417052433614 Functional Loss - DPP6 ENSG00000130226 CDS Human protein_coding chr7:154667779 chr7:154667782 stopgain 0.975 1 24 hm5C_associated_SNPs_85020 0 0 0 0 1 DPP6 chr7:154667810 5'GT 154667810 Upstream 29bp
chr19 7831586 7831586 1 + G A SKCM 7831583 + 7831563 7831603 41 CCAAGGACTGGACATTCTTCCAAGGAAACTGTTACTTCATG CCAAGGACTGGACATTCTTCCAAAGAAACTGTTACTTCATG < 41bp 0.764435863339447 0.548727917701589 0.9141462 0.69342333 prediction 0.431415891275716 Functional Loss - CLEC4M ENSG00000104938 CDS Human protein_coding chr19:7831583 chr19:7831586 nonsynonymous SNV 0.971 2 24 hm5C_associated_SNPs_85021 0 0 0 1 1 CLEC4M chr19:7831542 3'AG 7831542 Downstream 45bp
chr4 109578780 109578780 1 + A T BLCA 109578776 + 109578756 109578796 41 CCTATTGAGTTTTTTCATGGCTAGAGTATTCATGAGAATGA CCTATTGAGTTTTTTCATGGCTAGTGTATTCATGAGAATGA < 41bp 0.715704988502169 0.387064804751339 0.11960074 0.08996871 prediction 0.431409977004337 Functional Loss - OSTC ENSG00000198856 CDS Human protein_coding chr4:109578776 chr4:109578780 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_85022 0 0 1 0 1 OSTC chr4:109578803 5'GT 109578803 Upstream 24bp
chr9 136319619 136319619 1 + G A STAD 136319616 + 136319596 136319636 41 GCTCGGTGGCCTGTGTGCAGCTCGACCAAGGCCAGGACGTG GCTCGGTGGCCTGTGTGCAGCTCAACCAAGGCCAGGACGTG < 41bp 0.767694088418699 0.551991153209797 0.10754171 0.106001616 prediction 0.431405870417803 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136319616 chr9:136319619 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_85024 0 0 0 0 1 ADAMTS13 chr9:136319537 3'AG 136319537 Downstream 83bp
chr1 120050111 120050111 1 + G T SARC 120050108 + 120050088 120050128 41 CTTTGGATGGCCATGACGGGCTGGAGCTGCCTTGTGACAGG CTTTGGATGGCCATGACGGGCTGTAGCTGCCTTGTGACAGG < 41bp 0.930487417843522 0.714787586661729 0.31173933 0.095409036 prediction 0.431399662363585 Functional Loss - HSD3B1 ENSG00000203857 CDS Human protein_coding chr1:120050108 chr1:120050111 nonsynonymous SNV 0.896 2 24 hm5C_associated_SNPs_85025 0 0 0 0 1 HSD3B1 chr1:120050015 3'AG 120050015 Downstream 97bp
chr3 189586431 189586431 1 + G T BLCA 189586429 + 189586409 189586449 41 TGTGCTTGCCCAGGAAGAGACAGGAAGGCGGATGAAGATAG TGTGCTTGCCCAGGAAGAGACATGAAGGCGGATGAAGATAG < 41bp 0.902008315337679 0.686311240099767 0.3154572 0.169164 prediction 0.431394150475823 Functional Loss - TP63 ENSG00000073282 CDS Human protein_coding chr3:189586429 chr3:189586431 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_85027 0 0 0 0 3 TP63 chr3:189586369 3'AG 189586369 Downstream 63bp
chr3 189586431 189586431 1 + G T BLCA 189586429 + 189586409 189586449 41 TGTGCTTGCCCAGGAAGAGACAGGAAGGCGGATGAAGATAG TGTGCTTGCCCAGGAAGAGACATGAAGGCGGATGAAGATAG < 41bp 0.902008315337679 0.686311240099767 0.3154572 0.169164 prediction 0.431394150475823 Functional Loss - TP63 ENSG00000073282 CDS Human protein_coding chr3:189586429 chr3:189586431 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_85027 0 0 0 0 3 TP63 chr3:189586493 5'GT 189586493 Upstream 63bp
chr3 189586431 189586431 1 + G T BLCA 189586429 + 189586409 189586449 41 TGTGCTTGCCCAGGAAGAGACAGGAAGGCGGATGAAGATAG TGTGCTTGCCCAGGAAGAGACATGAAGGCGGATGAAGATAG < 41bp 0.902008315337679 0.686311240099767 0.3154572 0.169164 prediction 0.431394150475823 Functional Loss - TP63 ENSG00000073282 CDS Human protein_coding chr3:189586429 chr3:189586431 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_85027 0 0 0 0 3 TP63 chr3:189586505 5'GT 189586505 Upstream 75bp
chr10 103921612 103921612 1 + C T SKCM 103921609 + 103921589 103921629 41 GGGAGAAAAAAGGGCATCATCCCCATTCCGAAGGGTCAGGG GGGAGAAAAAAGGGCATCATCCCTATTCCGAAGGGTCAGGG < 41bp 0.71569607502323 0.475515312244101 0.07162559 0.044911295 prediction 0.431392150046459 Functional Loss - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103921609 chr10:103921612 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_85029 0 0 1 0 2 NOLC1 chr10:103921590 3'AG 103921590 Downstream 23bp
chr10 103921612 103921612 1 + C T SKCM 103921609 + 103921589 103921629 41 GGGAGAAAAAAGGGCATCATCCCCATTCCGAAGGGTCAGGG GGGAGAAAAAAGGGCATCATCCCTATTCCGAAGGGTCAGGG < 41bp 0.71569607502323 0.475515312244101 0.07162559 0.044911295 prediction 0.431392150046459 Functional Loss - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103921609 chr10:103921612 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_85029 0 0 1 0 2 NOLC1 chr10:103921682 5'GT 103921682 Upstream 71bp
chr10 103921611 103921611 1 + C T SKCM 103921609 + 103921589 103921629 41 GGGAGAAAAAAGGGCATCATCCCCATTCCGAAGGGTCAGGG GGGAGAAAAAAGGGCATCATCCTCATTCCGAAGGGTCAGGG < 41bp 0.71569607502323 0.40735568613876 0.07162559 0.11659035 prediction 0.431392150046459 Functional Loss - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103921609 chr10:103921611 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_85030 0 0 1 0 2 NOLC1 chr10:103921590 3'AG 103921590 Downstream 22bp
chr10 103921611 103921611 1 + C T SKCM 103921609 + 103921589 103921629 41 GGGAGAAAAAAGGGCATCATCCCCATTCCGAAGGGTCAGGG GGGAGAAAAAAGGGCATCATCCTCATTCCGAAGGGTCAGGG < 41bp 0.71569607502323 0.40735568613876 0.07162559 0.11659035 prediction 0.431392150046459 Functional Loss - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103921609 chr10:103921611 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_85030 0 0 1 0 2 NOLC1 chr10:103921682 5'GT 103921682 Upstream 72bp
chr10 103921613 103921613 1 + A T THCA 103921609 + 103921589 103921629 41 GGGAGAAAAAAGGGCATCATCCCCATTCCGAAGGGTCAGGG GGGAGAAAAAAGGGCATCATCCCCTTTCCGAAGGGTCAGGG < 41bp 0.71569607502323 0.358258258568813 0.07162559 0.053861767 prediction 0.431392150046459 Functional Loss - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103921609 chr10:103921613 synonymous SNV . 0 25 hm5C_associated_SNPs_85031 0 0 1 0 2 NOLC1 chr10:103921590 3'AG 103921590 Downstream 24bp
chr10 103921613 103921613 1 + A T THCA 103921609 + 103921589 103921629 41 GGGAGAAAAAAGGGCATCATCCCCATTCCGAAGGGTCAGGG GGGAGAAAAAAGGGCATCATCCCCTTTCCGAAGGGTCAGGG < 41bp 0.71569607502323 0.358258258568813 0.07162559 0.053861767 prediction 0.431392150046459 Functional Loss - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103921609 chr10:103921613 synonymous SNV . 0 25 hm5C_associated_SNPs_85031 0 0 1 0 2 NOLC1 chr10:103921682 5'GT 103921682 Upstream 70bp
chr19 17985510 17985510 1 + C T LUAD 17985507 + 17985487 17985527 41 ATCTGGGCGTCGCTCCTGTCCACCGGAATTATCTGCACCTT ATCTGGGCGTCGCTCCTGTCCACTGGAATTATCTGCACCTT < 41bp 0.720290168646705 0.504596544006437 0.3206908 0.42698663 prediction 0.431387249280535 Functional Loss - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17985507 chr19:17985510 synonymous SNV . 0 24 hm5C_associated_SNPs_85032 0 0 0 0 2 SLC5A5 chr19:17985473 3'AG 17985473 Downstream 38bp
chr19 17985510 17985510 1 + C T LUAD 17985507 + 17985487 17985527 41 ATCTGGGCGTCGCTCCTGTCCACCGGAATTATCTGCACCTT ATCTGGGCGTCGCTCCTGTCCACTGGAATTATCTGCACCTT < 41bp 0.720290168646705 0.504596544006437 0.3206908 0.42698663 prediction 0.431387249280535 Functional Loss - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17985507 chr19:17985510 synonymous SNV . 0 24 hm5C_associated_SNPs_85032 0 0 0 0 2 SLC5A5 chr19:17985540 5'GT 17985540 Upstream 31bp
chr21 37783840 37783840 1 + G T LUSC 37783838 + 37783818 37783858 41 CCGTGCTTCTGTATGACACCCAGCAGTCCTTCCCTTTTGGT CCGTGCTTCTGTATGACACCCATCAGTCCTTCCCTTTTGGT < 41bp 0.715690358932863 0.362139852932786 0.3452766 0.1163142 prediction 0.431380717865726 Functional Loss - CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37783838 chr21:37783840 nonsynonymous SNV 0.878 4 23 hm5C_associated_SNPs_85035 0 0 1 0 2 CHAF1B chr21:37783761 3'AG 37783761 Downstream 80bp
chr21 37783840 37783840 1 + G T LUSC 37783838 + 37783818 37783858 41 CCGTGCTTCTGTATGACACCCAGCAGTCCTTCCCTTTTGGT CCGTGCTTCTGTATGACACCCATCAGTCCTTCCCTTTTGGT < 41bp 0.715690358932863 0.362139852932786 0.3452766 0.1163142 prediction 0.431380717865726 Functional Loss - CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37783838 chr21:37783840 nonsynonymous SNV 0.878 4 23 hm5C_associated_SNPs_85035 0 0 1 0 2 CHAF1B chr21:37783902 5'GT 37783902 Upstream 63bp
chr16 29820871 29820871 1 + G A CESC 29820868 + 29820848 29820888 41 CACCCCCCAATAGGCTTCACCACGGCAGCATACCTGCGCAT CACCCCCCAATAGGCTTCACCACAGCAGCATACCTGCGCAT < 41bp 0.715686416932013 0.474482246279362 0.38981572 0.41759253 prediction 0.431372833864025 Functional Loss - MAZ ENSG00000103495 CDS Human protein_coding chr16:29820868 chr16:29820871 synonymous SNV . 0 24 hm5C_associated_SNPs_85037 0 0 1 0 1 MAZ chr16:29820861 3'AG 29820861 Downstream 11bp
chr17 77710899 77710899 1 + G A BRCA 77710896 + 77710876 77710916 41 TTTGACAACAAGGACATGGACATGAAGACCATCTTCCGCGC TTTGACAACAAGGACATGGACATAAAGACCATCTTCCGCGC < 41bp 0.783710058514052 0.568028507060634 0.27433658 0.10901344 prediction 0.431363102906835 Functional Loss - ENPP7 ENSG00000182156 CDS Human protein_coding chr17:77710896 chr17:77710899 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_85040 0 0 0 0 1 ENPP7 chr17:77710840 3'AG 77710840 Downstream 60bp
chr1 192778238 192778238 1 + T C UCEC 192778237 + 192778217 192778257 41 TTCTTGGCTGTTCAACACGACTGCAGACCCATGGACAAGAG TTCTTGGCTGTTCAACACGACCGCAGACCCATGGACAAGAG < 41bp 0.799192036455286 0.583512648156963 0.20439121 0.100351155 prediction 0.431358776596645 Functional Loss - RGS2 ENSG00000116741 CDS Human protein_coding chr1:192778237 chr1:192778238 nonsynonymous SNV 0.713 3 22 hm5C_associated_SNPs_85041 0 0 1 0 1 RGS2 chr1:192778311 5'GT 192778311 Upstream 74bp
chr1 228335194 228335194 1 + C T STAD 228335191 + 228335171 228335211 41 GGTGTGCGGAACATCAAGGCCACCGATCTGCGGCCCATCTA GGTGTGCGGAACATCAAGGCCACTGATCTGCGGCCCATCTA < 41bp 0.734909565909901 0.519231625011069 0.21930048 0.29465866 prediction 0.431355881797664 Functional Loss - GUK1 ENSG00000143774 CDS Human protein_coding chr1:228335191 chr1:228335194 synonymous SNV . 0 24 hm5C_associated_SNPs_85042 0 0 1 0 2 GUK1 chr1:228335107 3'AG 228335107 Downstream 88bp
chr1 228335194 228335194 1 + C T STAD 228335191 + 228335171 228335211 41 GGTGTGCGGAACATCAAGGCCACCGATCTGCGGCCCATCTA GGTGTGCGGAACATCAAGGCCACTGATCTGCGGCCCATCTA < 41bp 0.734909565909901 0.519231625011069 0.21930048 0.29465866 prediction 0.431355881797664 Functional Loss - GUK1 ENSG00000143774 CDS Human protein_coding chr1:228335191 chr1:228335194 synonymous SNV . 0 24 hm5C_associated_SNPs_85042 0 0 1 0 2 GUK1 chr1:228335245 5'GT 228335245 Upstream 52bp
chr4 189065213 189065213 1 + G T LUSC 189065209 + 189065189 189065229 41 GGAGCGAGCCACTCTTGCTTCAGTGTCCAGAGGCCACCACC GGAGCGAGCCACTCTTGCTTCAGTTTCCAGAGGCCACCACC < 41bp 0.734140283803229 0.518462911115116 0.21594366 0.15177342 prediction 0.431354745376228 Functional Loss - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189065209 chr4:189065213 nonsynonymous SNV 0.709 0 25 hm5C_associated_SNPs_85043 0 0 0 0 2 TRIML1 chr4:189065190 3'AG 189065190 Downstream 24bp
chr4 189065213 189065213 1 + G T LUSC 189065209 + 189065189 189065229 41 GGAGCGAGCCACTCTTGCTTCAGTGTCCAGAGGCCACCACC GGAGCGAGCCACTCTTGCTTCAGTTTCCAGAGGCCACCACC < 41bp 0.734140283803229 0.518462911115116 0.21594366 0.15177342 prediction 0.431354745376228 Functional Loss - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189065209 chr4:189065213 nonsynonymous SNV 0.709 0 25 hm5C_associated_SNPs_85043 0 0 0 0 2 TRIML1 chr4:189065287 5'GT 189065287 Upstream 75bp
chr1 19027164 19027164 1 + C T LUAD 19027162 + 19027142 19027182 41 CCCAGGTCTGGTTCAGTAACCGCCGCGCCCGTTGGCGTAAG CCCAGGTCTGGTTCAGTAACCGTCGCGCCCGTTGGCGTAAG < 41bp 0.715676319511008 0.441845826988346 0.16206887 0.071297824 prediction 0.431352639022015 Functional Loss - PAX7 ENSG00000009709 CDS Human protein_coding chr1:19027162 chr1:19027164 synonymous SNV . 0 23 hm5C_associated_SNPs_85044 0 0 0 0 1 PAX7 chr1:19027147 3'AG 19027147 Downstream 18bp
chr20 3005196 3005196 1 + G A PRAD 3005193 + 3005173 3005213 41 CAGAACTGGAAGTGACCTCTCTAGAAACCCACCTGCAGAAA CAGAACTGGAAGTGACCTCTCTAAAAACCCACCTGCAGAAA < 41bp 0.775540125022646 0.559864425815595 0.13635483 0.019348145 prediction 0.431351398414102 Functional Loss - PTPRA ENSG00000132670 CDS Human protein_coding chr20:3005193 chr20:3005196 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_85046 0 0 1 0 2 PTPRA chr20:3005118 3'AG 3005118 Downstream 79bp
chr20 3005196 3005196 1 + G A PRAD 3005193 + 3005173 3005213 41 CAGAACTGGAAGTGACCTCTCTAGAAACCCACCTGCAGAAA CAGAACTGGAAGTGACCTCTCTAAAAACCCACCTGCAGAAA < 41bp 0.775540125022646 0.559864425815595 0.13635483 0.019348145 prediction 0.431351398414102 Functional Loss - PTPRA ENSG00000132670 CDS Human protein_coding chr20:3005193 chr20:3005196 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_85046 0 0 1 0 2 PTPRA chr20:3005267 5'GT 3005267 Upstream 72bp
chr1 155106439 155106439 1 + G A rs114708813 155106436 + 155106416 155106456 41 CCTCTCACCTTGCAGATGACCCAGAGGTGCGGGTTCTACAT CCTCTCACCTTGCAGATGACCCAAAGGTGCGGGTTCTACAT < 41bp 0.78941662586451 0.573742107564788 0.82199347 0.18391323 prediction 0.431349036599444 Functional Loss - EFNA1 ENSG00000169242 CDS Human protein_coding chr1:155106436 chr1:155106439 nonsynonymous SNV 0.967 1 24 hm5C_associated_SNPs_85047 0 0 1 0 1 EFNA1 chr1:155106431 3'AG 155106431 Downstream 9bp
chr5 169535120 169535120 1 + G A LUSC 169535117 + 169535097 169535137 41 TTCGACAATGGAAATTTCCGCAGGAAAAGGAAGAGAAAATC TTCGACAATGGAAATTTCCGCAGAAAAAGGAAGAGAAAATC < 41bp 0.754372436595555 0.538697979377783 0.85298574 0.28047246 prediction 0.431348914435544 Functional Loss - FOXI1 ENSG00000168269 CDS Human protein_coding chr5:169535117 chr5:169535120 synonymous SNV . 0 24 hm5C_associated_SNPs_85048 0 0 0 0 1 FOXI1 chr5:169535053 3'AG 169535053 Downstream 68bp
chr15 101447414 101447414 1 + C T BRCA 101447411 + 101447391 101447431 41 TAGCACCGACTATGGACTCACAGCAGCCGTGTTCACAAAAA TAGCACCGACTATGGACTCACAGTAGCCGTGTTCACAAAAA < 41bp 0.721785218256306 0.506113496393589 0.1546166 0.08678615 prediction 0.431343443725433 Functional Loss - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101447411 chr15:101447414 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_85049 0 0 0 0 2 ALDH1A3 chr15:101447326 3'AG 101447326 Downstream 89bp
chr15 101447414 101447414 1 + C T BRCA 101447411 + 101447391 101447431 41 TAGCACCGACTATGGACTCACAGCAGCCGTGTTCACAAAAA TAGCACCGACTATGGACTCACAGTAGCCGTGTTCACAAAAA < 41bp 0.721785218256306 0.506113496393589 0.1546166 0.08678615 prediction 0.431343443725433 Functional Loss - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101447411 chr15:101447414 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_85049 0 0 0 0 2 ALDH1A3 chr15:101447483 5'GT 101447483 Upstream 70bp
chr5 16180546 16180546 1 + T C rs79158094 16180545 + 16180525 16180565 41 TCCTCCTCACCCGCTCCCTCCTGCAGTGAGCATCCCGGGTT TCCTCCTCACCCGCTCCCTCCCGCAGTGAGCATCCCGGGTT < 41bp 0.742168329400243 0.526497361725683 0.5187207 0.53697443 prediction 0.43134193534912 Functional Loss - MARCH11 ENSG00000250448 ncRNA_exonic Human antisense chr5:16180545 chr5:16180546 . . 0 22 hm5C_associated_SNPs_85050 0 0 0 0 1 MARCH11 chr5:16180549 5'GT 16180549 Upstream 4bp
chr18 59419089 59419089 1 + G A rs12956857 59419086 + 59419066 59419106 41 CCTCCTTGCCACAGATAACCCACGTAGCCAGGTGCTGCCAA CCTCCTTGCCACAGATAACCCACATAGCCAGGTGCTGCCAA < 41bp 0.749330385804855 0.533660175788147 0.10179776 0.016298085 prediction 0.431340420033416 Functional Loss - LINC01544 ENSG00000260440 ncRNA_exonic Human lincRNA chr18:59419086 chr18:59419089 . . 0 24 hm5C_associated_SNPs_85051 0 0 0 0 1 LINC01544 chr18:59419019 3'AG 59419019 Downstream 71bp
chr2 120395949 120395949 1 + G A rs183546677 120395946 + 120395926 120395966 41 AATTCACCAAAGAGTCCCGCCACGGGTCCAGCATTCCTGTC AATTCACCAAAGAGTCCCGCCACAGGTCCAGCATTCCTGTC < 41bp 0.715665742521136 0.474254999788631 0.30429488 0.24853149 prediction 0.431331485042272 Functional Loss - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120395946 chr2:120395949 nonsynonymous SNV 0.387 1 24 hm5C_associated_SNPs_85053 0 0 0 0 1 CFAP221 chr2:120395993 5'GT 120395993 Upstream 45bp
chr5 37379640 37379640 1 + G A BLCA 37379637 + 37379617 37379657 41 GACCCGCAGCTTGCGGTCACCATGGGCTTCACGGGGTTCGG GACCCGCAGCTTGCGGTCACCATAGGCTTCACGGGGTTCGG < 41bp 0.7581629569655 0.542498403131685 0.88457555 0.8820208 prediction 0.43132910766763 Functional Loss - WDR70 ENSG00000082068 CDS Human protein_coding chr5:37379637 chr5:37379640 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_85054 0 0 0 0 2 WDR70 chr5:37379591 3'AG 37379591 Downstream 50bp
chr5 37379640 37379640 1 + G A BLCA 37379637 + 37379617 37379657 41 GACCCGCAGCTTGCGGTCACCATGGGCTTCACGGGGTTCGG GACCCGCAGCTTGCGGTCACCATAGGCTTCACGGGGTTCGG < 41bp 0.7581629569655 0.542498403131685 0.88457555 0.8820208 prediction 0.43132910766763 Functional Loss - WDR70 ENSG00000082068 CDS Human protein_coding chr5:37379637 chr5:37379640 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_85054 0 0 0 0 2 WDR70 chr5:37379656 5'GT 37379656 Upstream 17bp
chr7 2742485 2742485 1 + G A STAD 2742482 + 2742462 2742502 41 CGCGTCCATCCGCTGCTCCTCGCGGCCCAGCCGGGACTCTG CGCGTCCATCCGCTGCTCCTCGCAGCCCAGCCGGGACTCTG < 41bp 0.816746890253764 0.601085417514176 0.8579355 0.6544235 prediction 0.431322945479176 Functional Loss - AMZ1 ENSG00000174945 CDS Human protein_coding chr7:2742482 chr7:2742485 nonsynonymous SNV 0.060 4 24 hm5C_associated_SNPs_85055 0 0 0 0 1 AMZ1 chr7:2742523 5'GT 2742523 Upstream 39bp
chr4 134084389 134084389 1 + G A LUSC 134084386 + 134084366 134084406 41 GCACTCTGGAGAGGAAGGAGCTGGATGGACTGCTGACTAAT GCACTCTGGAGAGGAAGGAGCTGAATGGACTGCTGACTAAT < 41bp 0.793425049757978 0.577764859898043 0.8624897 0.7547474 prediction 0.43132037971987 Functional Loss - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134084386 chr4:134084389 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_85057 0 0 0 0 1 PCDH10 chr4:134084437 5'GT 134084437 Upstream 49bp
chr14 24113713 24113713 1 + C T COAD 24113710 + 24113690 24113730 41 CCCAAGGACATCCGGGTAAACTGCGTGGTTCCAGGAATTAT CCCAAGGACATCCGGGTAAACTGTGTGGTTCCAGGAATTAT < 41bp 0.738897955266251 0.52323942934703 0.65373856 0.11353403 prediction 0.431317051838441 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113710 chr14:24113713 synonymous SNV . 0 24 hm5C_associated_SNPs_85058 0 0 1 0 3 DHRS2 chr14:24113618 3'AG 24113618 Downstream 96bp
chr14 24113713 24113713 1 + C T COAD 24113710 + 24113690 24113730 41 CCCAAGGACATCCGGGTAAACTGCGTGGTTCCAGGAATTAT CCCAAGGACATCCGGGTAAACTGTGTGGTTCCAGGAATTAT < 41bp 0.738897955266251 0.52323942934703 0.65373856 0.11353403 prediction 0.431317051838441 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113710 chr14:24113713 synonymous SNV . 0 24 hm5C_associated_SNPs_85058 0 0 1 0 3 DHRS2 chr14:24113752 5'GT 24113752 Upstream 40bp
chr14 24113713 24113713 1 + C T COAD 24113710 + 24113690 24113730 41 CCCAAGGACATCCGGGTAAACTGCGTGGTTCCAGGAATTAT CCCAAGGACATCCGGGTAAACTGTGTGGTTCCAGGAATTAT < 41bp 0.738897955266251 0.52323942934703 0.65373856 0.11353403 prediction 0.431317051838441 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113710 chr14:24113713 synonymous SNV . 0 24 hm5C_associated_SNPs_85058 0 0 1 0 3 DHRS2 chr14:24113763 5'GT 24113763 Upstream 51bp
chr10 30749660 30749660 1 + G A SKCM 30749657 + 30749637 30749677 41 TCTTCGTGCACAGGAAGCACCGAGGAATCTGAGATGCTCAA TCTTCGTGCACAGGAAGCACCGAAGAATCTGAGATGCTCAA < 41bp 0.767097949120564 0.55144322878148 0.53727573 0.08458054 prediction 0.431309440678168 Functional Loss - MAP3K8 ENSG00000107968 CDS Human protein_coding chr10:30749657 chr10:30749660 synonymous SNV . 0 24 hm5C_associated_SNPs_85059 0 0 0 0 1 MAP3K8 chr10:30749635 3'AG 30749635 Downstream 26bp
chr15 101565085 101565085 1 + G A BRCA 101565082 + 101565062 101565102 41 ACTGTCAACCAGTGCTTCTTCACGGACAAGGCCCTGTACGT ACTGTCAACCAGTGCTTCTTCACAGACAAGGCCCTGTACGT < 41bp 0.794365143231651 0.578713376321983 0.06757864 0.016421705 prediction 0.431303533819337 Functional Loss - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101565082 chr15:101565085 synonymous SNV . 0 24 hm5C_associated_SNPs_85060 0 0 0 0 3 LRRK1 chr15:101565005 3'AG 101565005 Downstream 81bp
chr15 101565085 101565085 1 + G A BRCA 101565082 + 101565062 101565102 41 ACTGTCAACCAGTGCTTCTTCACGGACAAGGCCCTGTACGT ACTGTCAACCAGTGCTTCTTCACAGACAAGGCCCTGTACGT < 41bp 0.794365143231651 0.578713376321983 0.06757864 0.016421705 prediction 0.431303533819337 Functional Loss - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101565082 chr15:101565085 synonymous SNV . 0 24 hm5C_associated_SNPs_85060 0 0 0 0 3 LRRK1 chr15:101565008 3'AG 101565008 Downstream 78bp
chr15 101565085 101565085 1 + G A BRCA 101565082 + 101565062 101565102 41 ACTGTCAACCAGTGCTTCTTCACGGACAAGGCCCTGTACGT ACTGTCAACCAGTGCTTCTTCACAGACAAGGCCCTGTACGT < 41bp 0.794365143231651 0.578713376321983 0.06757864 0.016421705 prediction 0.431303533819337 Functional Loss - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101565082 chr15:101565085 synonymous SNV . 0 24 hm5C_associated_SNPs_85060 0 0 0 0 3 LRRK1 chr15:101565172 5'GT 101565172 Upstream 88bp
chr10 14893264 14893264 1 + G A UCEC 14893261 + 14893241 14893281 41 TTAATGTTTTGCGATTAATTCACGAACCGTCTGCAGCTCTT TTAATGTTTTGCGATTAATTCACAAACCGTCTGCAGCTCTT < 41bp 0.765185772951905 0.549544393457968 0.3056582 0.04984632 prediction 0.431282758987874 Functional Loss - HSPA14 ENSG00000187522 CDS Human protein_coding chr10:14893261 chr10:14893264 nonsynonymous SNV 0.970 4 24 hm5C_associated_SNPs_85066 0 0 1 0 2 HSPA14 chr10:14893218 3'AG 14893218 Downstream 47bp
chr10 14893264 14893264 1 + G A UCEC 14893261 + 14893241 14893281 41 TTAATGTTTTGCGATTAATTCACGAACCGTCTGCAGCTCTT TTAATGTTTTGCGATTAATTCACAAACCGTCTGCAGCTCTT < 41bp 0.765185772951905 0.549544393457968 0.3056582 0.04984632 prediction 0.431282758987874 Functional Loss - HSPA14 ENSG00000187522 CDS Human protein_coding chr10:14893261 chr10:14893264 nonsynonymous SNV 0.970 4 24 hm5C_associated_SNPs_85066 0 0 1 0 2 HSPA14 chr10:14893322 5'GT 14893322 Upstream 59bp
chr1 32503558 32503558 1 + C T SARC 32503555 + 32503535 32503575 41 CCCACCTACTGTGAGGGGTGCTCCAGCACCAAGAGCACGGA CCCACCTACTGTGAGGGGTGCTCTAGCACCAAGAGCACGGA < 41bp 0.775103933302876 0.559463453221595 0.35927695 0.27037394 prediction 0.431280960162562 Functional Loss - KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32503555 chr1:32503558 nonsynonymous SNV 0.993 0 24 hm5C_associated_SNPs_85067 0 0 1 0 1 KHDRBS1 chr1:32503637 5'GT 32503637 Upstream 80bp
chr19 39906077 39906077 1 + C T UCEC 39906074 + 39906054 39906094 41 ATTGAGGACATCTACGAGTTCAGCAGGTCAGGGGCAGGGGG ATTGAGGACATCTACGAGTTCAGTAGGTCAGGGGCAGGGGG < 41bp 0.72529366665809 0.509654317910067 0.7593534 0.73273927 prediction 0.431278697496047 Functional Loss - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39906074 chr19:39906077 synonymous SNV . 0 24 hm5C_associated_SNPs_85069 0 0 1 0 2 PLEKHG2 chr19:39905979 3'AG 39905979 Downstream 99bp
chr19 39906077 39906077 1 + C T UCEC 39906074 + 39906054 39906094 41 ATTGAGGACATCTACGAGTTCAGCAGGTCAGGGGCAGGGGG ATTGAGGACATCTACGAGTTCAGTAGGTCAGGGGCAGGGGG < 41bp 0.72529366665809 0.509654317910067 0.7593534 0.73273927 prediction 0.431278697496047 Functional Loss - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39906074 chr19:39906077 synonymous SNV . 0 24 hm5C_associated_SNPs_85069 0 0 1 0 2 PLEKHG2 chr19:39906079 5'GT 39906079 Upstream 3bp
chr11 117053326 117053326 1 + A C CESC 117053325 + 117053305 117053345 41 CCTGCTCAGTCATCTCCATTCAGGATGTGCTGGTGAGTTGC CCTGCTCAGTCATCTCCATTCCGGATGTGCTGGTGAGTTGC < 41bp 0.836253684354031 0.620615301919377 0.94592285 0.93366593 prediction 0.431276764869307 Functional Loss - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117053325 chr11:117053326 nonsynonymous SNV 0.991 4 22 hm5C_associated_SNPs_85070 0 0 1 0 2 SIDT2 chr11:117053235 3'AG 117053235 Downstream 92bp
chr11 117053326 117053326 1 + A C CESC 117053325 + 117053305 117053345 41 CCTGCTCAGTCATCTCCATTCAGGATGTGCTGGTGAGTTGC CCTGCTCAGTCATCTCCATTCCGGATGTGCTGGTGAGTTGC < 41bp 0.836253684354031 0.620615301919377 0.94592285 0.93366593 prediction 0.431276764869307 Functional Loss - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117053325 chr11:117053326 nonsynonymous SNV 0.991 4 22 hm5C_associated_SNPs_85070 0 0 1 0 2 SIDT2 chr11:117053336 5'GT 117053336 Upstream 11bp
chr7 94039080 94039080 1 + G A STAD 94039077 + 94039057 94039097 41 CTCCCGGCCTCCCTGGACCCCGCGGTATTCCTGGCCCTGTT CTCCCGGCCTCCCTGGACCCCGCAGTATTCCTGGCCCTGTT < 41bp 0.782774636148657 0.567139986513866 0.8676927 0.72638786 prediction 0.431269299269581 Functional Loss - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94039077 chr7:94039080 nonsynonymous SNV 0.988 5 24 hm5C_associated_SNPs_85073 0 0 0 0 2 COL1A2 chr7:94039035 3'AG 94039035 Downstream 46bp
chr7 94039080 94039080 1 + G A STAD 94039077 + 94039057 94039097 41 CTCCCGGCCTCCCTGGACCCCGCGGTATTCCTGGCCCTGTT CTCCCGGCCTCCCTGGACCCCGCAGTATTCCTGGCCCTGTT < 41bp 0.782774636148657 0.567139986513866 0.8676927 0.72638786 prediction 0.431269299269581 Functional Loss - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94039077 chr7:94039080 nonsynonymous SNV 0.988 5 24 hm5C_associated_SNPs_85073 0 0 0 0 2 COL1A2 chr7:94039133 5'GT 94039133 Upstream 54bp
chr20 209973 209973 1 + G T LUSC 209971 + 209951 209991 41 TTGGGGAGATGCAGGGATCACTGCAATGTGGATGAAAAAGA TTGGGGAGATGCAGGGATCACTTCAATGTGGATGAAAAAGA < 41bp 0.888978516356796 0.673349575006452 0.8247695 0.8859261 prediction 0.43125788270069 Functional Loss - DEFB129 ENSG00000125903 CDS Human protein_coding chr20:209971 chr20:209973 nonsynonymous SNV 0.004 5 23 hm5C_associated_SNPs_85078 0 0 0 0 1 DEFB129 chr20:209919 3'AG 209919 Downstream 55bp
chrX 135084290 135084290 1 + G A UCEC 135084287 + 135084267 135084307 41 TGACTGTTCTTGCTATATTCCACGAGCTTCAAGTTGATGTT TGACTGTTCTTGCTATATTCCACAAGCTTCAAGTTGATGTT < 41bp 0.715625866678372 0.481181241749431 0.075930536 0.09230313 prediction 0.431251733356744 Functional Loss - SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135084287 chrX:135084290 nonsynonymous SNV 0.988 3 24 hm5C_associated_SNPs_85079 0 0 1 0 2 SLC9A6 chrX:135084267 3'AG 135084267 Downstream 24bp
chrX 135084290 135084290 1 + G A UCEC 135084287 + 135084267 135084307 41 TGACTGTTCTTGCTATATTCCACGAGCTTCAAGTTGATGTT TGACTGTTCTTGCTATATTCCACAAGCTTCAAGTTGATGTT < 41bp 0.715625866678372 0.481181241749431 0.075930536 0.09230313 prediction 0.431251733356744 Functional Loss - SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135084287 chrX:135084290 nonsynonymous SNV 0.988 3 24 hm5C_associated_SNPs_85079 0 0 1 0 2 SLC9A6 chrX:135084372 5'GT 135084372 Upstream 83bp
chrX 128881685 128881685 1 + C T LIHC 128881682 + 128881662 128881702 41 GGTATGGGGATCAGAGAGGCCACCGGTTCCAAATCAACCCA GGTATGGGGATCAGAGAGGCCACTGGTTCCAAATCAACCCA < 41bp 0.726910513913056 0.511288194503687 0.4333612 0.41452175 prediction 0.431244638818739 Functional Loss - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128881682 chrX:128881685 nonsynonymous SNV 0.044 0 24 hm5C_associated_SNPs_85080 0 0 0 0 1 XPNPEP2 chrX:128881729 5'GT 128881729 Upstream 45bp
chr17 48247549 48247549 1 + G T UCEC 48247547 + 48247527 48247567 41 TGCAGATGAGGTGCCCACCCCAGGTGATGGGATCCTGGAGC TGCAGATGAGGTGCCCACCCCATGTGATGGGATCCTGGAGC < 41bp 0.715617166687813 0.356049009475595 0.9162856 0.65656537 prediction 0.431234333375626 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48247547 chr17:48247549 nonsynonymous SNV 0.162 5 23 hm5C_associated_SNPs_85081 0 0 0 0 1 SGCA chr17:48247504 3'AG 48247504 Downstream 46bp
chr12 7026224 7026224 1 + A T SKCM 7026220 + 7026200 7026240 41 AGGGTCTCTCTGTGGTGGAGCAAGAGAAACTGGACAACCTG AGGGTCTCTCTGTGGTGGAGCAAGTGAAACTGGACAACCTG < 41bp 0.715614675308559 0.396854204153899 0.90871847 0.9112362 prediction 0.431229350617118 Functional Loss - ENO2 ENSG00000111674 CDS Human protein_coding chr12:7026220 chr12:7026224 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_85085 0 0 1 0 1 ENO2 chr12:7026271 5'GT 7026271 Upstream 48bp
chr19 7712333 7712333 1 + G A COAD 7712330 + 7712310 7712350 41 TATGTCATGGGCGGTGTGGCCATGTCAGAGATGAGGGCCGC TATGTCATGGGCGGTGTGGCCATATCAGAGATGAGGGCCGC < 41bp 0.728807778582117 0.513193906322569 0.5041291 0.3780642 prediction 0.431227744519096 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7712330 chr19:7712333 nonsynonymous SNV 0.963 2 24 hm5C_associated_SNPs_85087 0 0 1 1 2 STXBP2 chr19:7712240 3'AG 7712240 Downstream 94bp
chr19 7712333 7712333 1 + G A COAD 7712330 + 7712310 7712350 41 TATGTCATGGGCGGTGTGGCCATGTCAGAGATGAGGGCCGC TATGTCATGGGCGGTGTGGCCATATCAGAGATGAGGGCCGC < 41bp 0.728807778582117 0.513193906322569 0.5041291 0.3780642 prediction 0.431227744519096 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7712330 chr19:7712333 nonsynonymous SNV 0.963 2 24 hm5C_associated_SNPs_85087 0 0 1 1 2 STXBP2 chr19:7712397 5'GT 7712397 Upstream 65bp
chr19 35823819 35823819 1 + A C UCEC 35823815 + 35823795 35823835 41 AATGGATGGAACGAATACACCTCAATGTCTCTGGTAAGGCC AATGGATGGAACGAATACACCTCACTGTCTCTGGTAAGGCC < 41bp 0.715609898072413 0.28206477427004 0.096803874 0.049406677 prediction 0.431219796144826 Functional Loss - CD22 ENSG00000012124 CDS Human protein_coding chr19:35823815 chr19:35823819 nonsynonymous SNV 0.863 1 25 hm5C_associated_SNPs_85089 0 0 0 0 1 CD22 chr19:35823827 5'GT 35823827 Upstream 9bp
chr10 13234328 13234328 1 + G A rs141376818 13234325 + 13234305 13234345 41 GACCTGCCGACGTGTGGAGCCAGGAACTTAAAACAACATTT GACCTGCCGACGTGTGGAGCCAGAAACTTAAAACAACATTT < 41bp 0.77718978120854 0.561580177919878 0.07641104 0.067349374 prediction 0.431219206577324 Functional Loss - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13234325 chr10:13234328 synonymous SNV . 0 24 hm5C_associated_SNPs_85090 0 0 1 0 2 MCM10 chr10:13234255 3'AG 13234255 Downstream 74bp
chr10 13234328 13234328 1 + G A rs141376818 13234325 + 13234305 13234345 41 GACCTGCCGACGTGTGGAGCCAGGAACTTAAAACAACATTT GACCTGCCGACGTGTGGAGCCAGAAACTTAAAACAACATTT < 41bp 0.77718978120854 0.561580177919878 0.07641104 0.067349374 prediction 0.431219206577324 Functional Loss - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13234325 chr10:13234328 synonymous SNV . 0 24 hm5C_associated_SNPs_85090 0 0 1 0 2 MCM10 chr10:13234365 5'GT 13234365 Upstream 38bp
chr17 78082367 78082367 1 + C T UCEC 78082365 + 78082345 78082385 41 ACTCCTCCACCGCTATCACCCGCCAGGTGGTGGAGAACATG ACTCCTCCACCGCTATCACCCGTCAGGTGGTGGAGAACATG < 41bp 0.847023186327785 0.631414524144838 0.7590587 0.39353994 prediction 0.431217324365894 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78082365 chr17:78082367 synonymous SNV . 0 23 hm5C_associated_SNPs_85091 0 0 1 0 2 GAA chr17:78082288 3'AG 78082288 Downstream 80bp
chr17 78082367 78082367 1 + C T UCEC 78082365 + 78082345 78082385 41 ACTCCTCCACCGCTATCACCCGCCAGGTGGTGGAGAACATG ACTCCTCCACCGCTATCACCCGTCAGGTGGTGGAGAACATG < 41bp 0.847023186327785 0.631414524144838 0.7590587 0.39353994 prediction 0.431217324365894 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78082365 chr17:78082367 synonymous SNV . 0 23 hm5C_associated_SNPs_85091 0 0 1 0 2 GAA chr17:78082406 5'GT 78082406 Upstream 40bp
chr6 49494272 49494272 1 + G A UCEC 49494269 + 49494249 49494289 41 TCTACTCAACCGGACTTGGTCCCGGGGAGGCAATGAACAAT TCTACTCAACCGGACTTGGTCCCAGGGAGGCAATGAACAAT < 41bp 0.715604345978409 0.47400324269748 0.38598734 0.26028937 prediction 0.431208691956819 Functional Loss - GLYATL3 ENSG00000203972 CDS Human protein_coding chr6:49494269 chr6:49494272 nonsynonymous SNV 0.075 3 24 hm5C_associated_SNPs_85094 0 0 0 0 1 GLYATL3 chr6:49494201 3'AG 49494201 Downstream 72bp
chr15 92647678 92647678 1 + C T COAD 92647675 + 92647655 92647695 41 GAAAGCGAGCAGGCCATGCTCTCCGAAAGAGAATACGAGAG GAAAGCGAGCAGGCCATGCTCTCTGAAAGAGAATACGAGAG < 41bp 0.756613364188116 0.541011871805617 0.34647813 0.11450246 prediction 0.431202984764998 Functional Loss - SLCO3A1 ENSG00000176463 CDS Human protein_coding chr15:92647675 chr15:92647678 synonymous SNV . 0 24 hm5C_associated_SNPs_85096 0 0 0 0 1 SLCO3A1 chr15:92647772 5'GT 92647772 Upstream 95bp
chr3 50220395 50220395 1 + G A STAD 50220392 + 50220372 50220412 41 GTGGAGCACATTCCTGAAGGCGCGGCTCGTCTGCTCTGTCC GTGGAGCACATTCCTGAAGGCGCAGCTCGTCTGCTCTGTCC < 41bp 0.808165639993323 0.592566951233671 0.3687102 0.19254106 prediction 0.431197377519303 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50220392 chr3:50220395 nonsynonymous SNV 0.320 4 24 hm5C_associated_SNPs_85098 0 0 0 0 2 SEMA3F chr3:50220337 3'AG 50220337 Downstream 59bp
chr3 50220395 50220395 1 + G A STAD 50220392 + 50220372 50220412 41 GTGGAGCACATTCCTGAAGGCGCGGCTCGTCTGCTCTGTCC GTGGAGCACATTCCTGAAGGCGCAGCTCGTCTGCTCTGTCC < 41bp 0.808165639993323 0.592566951233671 0.3687102 0.19254106 prediction 0.431197377519303 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50220392 chr3:50220395 nonsynonymous SNV 0.320 4 24 hm5C_associated_SNPs_85098 0 0 0 0 2 SEMA3F chr3:50220451 5'GT 50220451 Upstream 57bp
chr3 20167475 20167475 1 + G A UCEC 20167472 + 20167452 20167492 41 GCAGGGGTGTAATTGAATTTCACGTGGTTGGCAATTCCCTC GCAGGGGTGTAATTGAATTTCACATGGTTGGCAATTCCCTC < 41bp 0.784011343749102 0.568414109349647 0.07693139 0.08671385 prediction 0.43119446879891 Functional Loss - KAT2B ENSG00000114166 CDS Human protein_coding chr3:20167472 chr3:20167475 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_85099 0 0 0 0 1 KAT2B chr3:20167397 3'AG 20167397 Downstream 79bp
chr7 47694925 47694925 1 + G T ESCA 47694923 + 47694903 47694943 41 AGAAGGAAGACGGCTCTGGCCGGGCCCCAGGGAGGGAGGCA AGAAGGAAGACGGCTCTGGCCGTGCCCCAGGGAGGGAGGCA < 41bp 0.715596062362431 0.360571123409321 0.7237808 0.19826156 prediction 0.431192124724862 Functional Loss - C7orf65 ENSG00000221845 CDS Human lincRNA chr7:47694923 chr7:47694925 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_85100 0 0 0 0 1 C7orf65 chr7:47694946 5'GT 47694946 Upstream 22bp
chr6 16290783 16290783 1 + T C COAD 16290782 + 16290762 16290802 41 TTGAGAGGAACGGACGGAAGCTCAAGCTCTTCTACGGGATG TTGAGAGGAACGGACGGAAGCCCAAGCTCTTCTACGGGATG < 41bp 0.715584274467553 0.450170013229849 0.36278963 0.22415873 prediction 0.431168548935105 Functional Loss - GMPR ENSG00000137198 CDS Human protein_coding chr6:16290782 chr6:16290783 nonsynonymous SNV 0.929 3 22 hm5C_associated_SNPs_85105 0 0 1 0 2 GMPR chr6:16290693 3'AG 16290693 Downstream 91bp
chr6 16290783 16290783 1 + T C COAD 16290782 + 16290762 16290802 41 TTGAGAGGAACGGACGGAAGCTCAAGCTCTTCTACGGGATG TTGAGAGGAACGGACGGAAGCCCAAGCTCTTCTACGGGATG < 41bp 0.715584274467553 0.450170013229849 0.36278963 0.22415873 prediction 0.431168548935105 Functional Loss - GMPR ENSG00000137198 CDS Human protein_coding chr6:16290782 chr6:16290783 nonsynonymous SNV 0.929 3 22 hm5C_associated_SNPs_85105 0 0 1 0 2 GMPR chr6:16290852 5'GT 16290852 Upstream 70bp
chr1 161681738 161681738 1 + C T READ 161681736 + 161681716 161681756 41 TTTCCCAGAACTGTTTCCAGCGCCAATTCTCAGAGCTGTAC TTTCCCAGAACTGTTTCCAGCGTCAATTCTCAGAGCTGTAC < 41bp 0.715583705866912 0.438115531019548 0.07493591 0.11450726 prediction 0.431167411733824 Functional Loss - FCRLA ENSG00000132185 CDS Human protein_coding chr1:161681736 chr1:161681738 nonsynonymous SNV 0.741 4 23 hm5C_associated_SNPs_85106 0 0 0 0 1 FCRLA chr1:161681724 3'AG 161681724 Downstream 15bp
chr11 124748506 124748506 1 + C T UCEC 124748503 + 124748483 124748523 41 AGAGCCAGAGGAGTGGTGCCCGCCAATGCCTGAGAGAAGTC AGAGCCAGAGGAGTGGTGCCCGCTAATGCCTGAGAGAAGTC < 41bp 0.74176323245718 0.526182854593473 0.656006 0.28287375 prediction 0.431160755727414 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124748503 chr11:124748506 nonsynonymous SNV 0.018 3 24 hm5C_associated_SNPs_85108 0 0 0 0 1 ROBO3 chr11:124748480 3'AG 124748480 Downstream 27bp
chr6 36926998 36926998 1 + G A BLCA 36926995 + 36926975 36927015 41 TGGGGCCACAACAAGGAGCGCGGGCGCCGCGGCGAGAATCT TGGGGCCACAACAAGGAGCGCGGACGCCGCGGCGAGAATCT < 41bp 0.715580283958169 0.462451888737375 0.89005214 0.6226014 prediction 0.431160567916338 Functional Loss - PI16 ENSG00000164530 CDS Human protein_coding chr6:36926995 chr6:36926998 synonymous SNV . 0 24 hm5C_associated_SNPs_85109 0 0 0 0 1 PI16 chr6:36926921 3'AG 36926921 Downstream 78bp
chr1 227920368 227920368 1 - T G STAD 227920372 - 227920352 227920392 41 CTTCCCTCTGCCCAGGTCATCATGAGGTCCTGCTCGGGCAT CTTCCCTCTGCCCAGGTCATCATGCGGTCCTGCTCGGGCAT < 41bp 0.715577521149945 0.325272143457733 0.5176896 0.42874134 prediction 0.431155042299889 Functional Loss - JMJD4 ENSG00000081692 CDS Human protein_coding chr1:227920372 chr1:227920368 synonymous SNV . 0 25 hm5C_associated_SNPs_85111 0 0 1 0 1 JMJD4 chr1:227920377 3'AG 227920377 Downstream 10bp
chr2 33774771 33774771 1 + G A SKCM 33774768 + 33774748 33774788 41 CAGGATTTATCCATAATTTTCAGGAGATGACCTATCTCAAG CAGGATTTATCCATAATTTTCAGAAGATGACCTATCTCAAG < 41bp 0.776315684781369 0.560741122605516 0.93278694 0.7706001 prediction 0.431149124351706 Functional Loss - RASGRP3 ENSG00000152689 CDS Human protein_coding chr2:33774768 chr2:33774771 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_85113 0 0 0 0 1 RASGRP3 chr2:33774818 5'GT 33774818 Upstream 48bp
chr1 26888016 26888016 1 + C T UCEC 26888014 + 26887994 26888034 41 AGGTGTATGATGATGGCAAACACGTGTACCTGGTGACAGAG AGGTGTATGATGATGGCAAACATGTGTACCTGGTGACAGAG < 41bp 0.715573675542372 0.430701442114132 0.386687 0.32169867 prediction 0.431147351084743 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26888014 chr1:26888016 synonymous SNV . 0 23 hm5C_associated_SNPs_85114 0 0 1 0 1 RPS6KA1 chr1:26887996 3'AG 26887996 Downstream 21bp
chr16 50067410 50067410 1 + C T UCEC 50067408 + 50067388 50067428 41 AATACACAAGAGAGTAGTTGCACCATCAATGTATCCTTTAC AATACACAAGAGAGTAGTTGCATCATCAATGTATCCTTTAC < 41bp 0.715572421066147 0.437490351487017 0.05493352 0.14490157 prediction 0.431144842132293 Functional Loss - CNEP1R1 ENSG00000205423 CDS Human protein_coding chr16:50067408 chr16:50067410 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_85115 0 0 1 1 1 CNEP1R1 chr16:50067417 5'GT 50067417 Upstream 8bp
chr10 89472990 89472990 1 + C T STAD 89472987 + 89472967 89473007 41 GGGACAGAGAGGAAAATATCCGCCGGATTGCTGAGGTGGCT GGGACAGAGAGGAAAATATCCGCTGGATTGCTGAGGTGGCT < 41bp 0.755332875050818 0.539760582987206 0.36705828 0.328189 prediction 0.431144584127224 Functional Loss - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89472987 chr10:89472990 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_85116 0 0 1 0 1 PAPSS2 chr10:89473067 5'GT 89473067 Upstream 78bp
chr17 27183332 27183332 1 + C T LUAD 27183330 + 27183310 27183350 41 CCCTGATATGCCTGAGAATTCCCGGGTCCTACGAGTGGTCC CCCTGATATGCCTGAGAATTCCTGGGTCCTACGAGTGGTCC < 41bp 0.837965905518009 0.622393699999048 0.8364209 0.32085204 prediction 0.431144411037923 Functional Loss - ERAL1 ENSG00000132591 CDS Human protein_coding chr17:27183330 chr17:27183332 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_85117 0 0 1 0 2 ERAL1 chr17:27183282 3'AG 27183282 Downstream 51bp
chr17 27183332 27183332 1 + C T LUAD 27183330 + 27183310 27183350 41 CCCTGATATGCCTGAGAATTCCCGGGTCCTACGAGTGGTCC CCCTGATATGCCTGAGAATTCCTGGGTCCTACGAGTGGTCC < 41bp 0.837965905518009 0.622393699999048 0.8364209 0.32085204 prediction 0.431144411037923 Functional Loss - ERAL1 ENSG00000132591 CDS Human protein_coding chr17:27183330 chr17:27183332 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_85117 0 0 1 0 2 ERAL1 chr17:27183409 5'GT 27183409 Upstream 78bp
chr5 147820025 147820025 1 + G A PAAD 147820022 + 147820002 147820042 41 TGAATTCTTCCCTGAAGCCACTCGAAGTGAAGAAGACTTAA TGAATTCTTCCCTGAAGCCACTCAAAGTGAAGAAGACTTAA < 41bp 0.715571000098665 0.484834461119426 0.20236051 0.028331906 prediction 0.431142000197329 Functional Loss - FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147820022 chr5:147820025 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_85119 0 0 0 0 2 FBXO38 chr5:147819987 3'AG 147819987 Downstream 39bp
chr5 147820025 147820025 1 + G A PAAD 147820022 + 147820002 147820042 41 TGAATTCTTCCCTGAAGCCACTCGAAGTGAAGAAGACTTAA TGAATTCTTCCCTGAAGCCACTCAAAGTGAAGAAGACTTAA < 41bp 0.715571000098665 0.484834461119426 0.20236051 0.028331906 prediction 0.431142000197329 Functional Loss - FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147820022 chr5:147820025 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_85119 0 0 0 0 2 FBXO38 chr5:147820090 5'GT 147820090 Upstream 66bp
chr1 9655965 9655965 1 + C T rs80180768 9655963 + 9655943 9655983 41 CACAGGATGAAGCCAACGCACACGATGGTCAACTGCTGGTT CACAGGATGAAGCCAACGCACATGATGGTCAACTGCTGGTT < 41bp 0.843752110835817 0.628181544717871 0.15627885 0.3361318 prediction 0.431141132235893 Functional Loss - TMEM201 ENSG00000188807 CDS Human protein_coding chr1:9655963 chr1:9655965 nonsynonymous SNV 0.889 0 23 hm5C_associated_SNPs_85120 0 0 1 0 1 TMEM201 chr1:9655948 3'AG 9655948 Downstream 18bp
chr8 2021510 2021510 1 + G T LUAD 2021507 + 2021487 2021527 41 AGCCACCTGCACAAGGACGACGAGGGCCTGTACACCCTGCG AGCCACCTGCACAAGGACGACGATGGCCTGTACACCCTGCG < 41bp 0.715564900143253 0.316998354116671 0.81931424 0.42862058 prediction 0.431129800286506 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2021507 chr8:2021510 nonsynonymous SNV 0.925 2 24 hm5C_associated_SNPs_85122 0 0 0 0 2 MYOM2 chr8:2021419 3'AG 2021419 Downstream 92bp
chr8 2021510 2021510 1 + G T LUAD 2021507 + 2021487 2021527 41 AGCCACCTGCACAAGGACGACGAGGGCCTGTACACCCTGCG AGCCACCTGCACAAGGACGACGATGGCCTGTACACCCTGCG < 41bp 0.715564900143253 0.316998354116671 0.81931424 0.42862058 prediction 0.431129800286506 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2021507 chr8:2021510 nonsynonymous SNV 0.925 2 24 hm5C_associated_SNPs_85122 0 0 0 0 2 MYOM2 chr8:2021580 5'GT 2021580 Upstream 71bp
chr8 82670525 82670525 1 + G A PAAD 82670522 + 82670502 82670542 41 GTCGTCCACTGCACGTCGATCCCGAGCAGGTCTGTTACCCA GTCGTCCACTGCACGTCGATCCCAAGCAGGTCTGTTACCCA < 41bp 0.795098160978887 0.57953360617205 0.321289 0.11525339 prediction 0.431129109613675 Functional Loss - CHMP4C ENSG00000164695 CDS Human protein_coding chr8:82670522 chr8:82670525 nonsynonymous SNV 0.127 0 24 hm5C_associated_SNPs_85123 0 0 0 0 1 CHMP4C chr8:82670530 5'GT 82670530 Upstream 6bp
chr21 45719984 45719984 1 + C T rs550375523 45719982 + 45719962 45720002 41 AGCTGGGCCCGTGTTTCGGCCGCCGCCATGGCCGCGGTGGA AGCTGGGCCCGTGTTTCGGCCGTCGCCATGGCCGCGGTGGA < 41bp 0.739420480327166 0.523860121105263 0.24863848 0.26876807 prediction 0.431120718443806 Functional Loss - PFKL ENSG00000141959 UTR5 Human protein_coding chr21:45719982 chr21:45719984 . . 0 23 hm5C_associated_SNPs_85127 0 0 1 0 1 PFKL chr21:45720073 5'GT 45720073 Upstream 90bp
chr3 183862407 183862407 1 + T C LIHC 183862406 + 183862386 183862426 41 TACTGATGGCTTTCTACCAGCTGGAGATCCTGGCTGAGGAA TACTGATGGCTTTCTACCAGCCGGAGATCCTGGCTGAGGAA < 41bp 0.824043700401058 0.608487571598119 0.8613005 0.8950535 prediction 0.431112257605877 Functional Loss - EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183862406 chr3:183862407 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_85129 0 0 1 0 2 EIF2B5 chr3:183862385 3'AG 183862385 Downstream 23bp
chr3 183862407 183862407 1 + T C LIHC 183862406 + 183862386 183862426 41 TACTGATGGCTTTCTACCAGCTGGAGATCCTGGCTGAGGAA TACTGATGGCTTTCTACCAGCCGGAGATCCTGGCTGAGGAA < 41bp 0.824043700401058 0.608487571598119 0.8613005 0.8950535 prediction 0.431112257605877 Functional Loss - EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183862406 chr3:183862407 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_85129 0 0 1 0 2 EIF2B5 chr3:183862495 5'GT 183862495 Upstream 89bp
chr7 99720200 99720200 1 + G A STAD 99720197 + 99720177 99720217 41 AAGGGCTCACTGAGATATGCCAAGGTCAGACCCTTCCCCAG AAGGGCTCACTGAGATATGCCAAAGTCAGACCCTTCCCCAG < 41bp 0.810641955349128 0.595086268657622 0.5724824 0.35862237 prediction 0.431111373383012 Functional Loss - CNPY4 ENSG00000166997 CDS Human protein_coding chr7:99720197 chr7:99720200 synonymous SNV . 0 24 hm5C_associated_SNPs_85130 0 0 0 0 2 CNPY4 chr7:99720104 3'AG 99720104 Downstream 97bp
chr7 99720200 99720200 1 + G A STAD 99720197 + 99720177 99720217 41 AAGGGCTCACTGAGATATGCCAAGGTCAGACCCTTCCCCAG AAGGGCTCACTGAGATATGCCAAAGTCAGACCCTTCCCCAG < 41bp 0.810641955349128 0.595086268657622 0.5724824 0.35862237 prediction 0.431111373383012 Functional Loss - CNPY4 ENSG00000166997 CDS Human protein_coding chr7:99720197 chr7:99720200 synonymous SNV . 0 24 hm5C_associated_SNPs_85130 0 0 0 0 2 CNPY4 chr7:99720200 5'GT 99720200 Upstream 1bp
chr12 100751219 100751219 1 + G A UCEC 100751216 + 100751196 100751236 41 CAAAGAAAAAATTCTGAAACCTGGGAAGGAAGGAGTGAAGA CAAAGAAAAAATTCTGAAACCTGAGAAGGAAGGAGTGAAGA < 41bp 0.715543818972486 0.496524066712823 0.22041148 0.1470075 prediction 0.431087637944972 Functional Loss - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100751216 chr12:100751219 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_85134 0 0 0 0 1 SLC17A8 chr12:100751270 5'GT 100751270 Upstream 52bp
chr15 58840557 58840557 1 + C T rs146299102 58840555 + 58840535 58840575 41 CCCAGACCATAAAATGCTCCCACGAGCGATCGGTGCACCTT CCCAGACCATAAAATGCTCCCATGAGCGATCGGTGCACCTT < 41bp 0.863487214981329 0.647945350535256 0.16511747 0.121223 prediction 0.431083728892147 Functional Loss - LIPC ENSG00000166035 CDS Human protein_coding chr15:58840555 chr15:58840557 synonymous SNV . 0 23 hm5C_associated_SNPs_85136 0 0 1 0 1 LIPC chr15:58840529 3'AG 58840529 Downstream 29bp
chr16 336660 336660 1 + G A rs11647490 336657 + 336637 336677 41 ATCATTGCTGAGCTGGATGCCACGGCCAACGAGCTGGATGC ATCATTGCTGAGCTGGATGCCACAGCCAACGAGCTGGATGC < 41bp 0.715537381720672 0.469074029859528 0.16898537 0.13074836 prediction 0.431074763441345 Functional Loss - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:336657 chr16:336660 synonymous SNV . 0 24 hm5C_associated_SNPs_85138 0 0 0 0 1 PDIA2 chr16:336735 5'GT 336735 Upstream 76bp
chr14 96875241 96875241 1 + C T UCEC 96875238 + 96875218 96875258 41 AAAGCTATTTATTTTACTGTCGACGGTGATGACTTGGGCGC AAAGCTATTTATTTTACTGTCGATGGTGATGACTTGGGCGC < 41bp 0.7235273158815 0.50799953919225 0.68137705 0.4583481 prediction 0.431055553378499 Functional Loss - AK7 ENSG00000140057 CDS Human protein_coding chr14:96875238 chr14:96875241 nonsynonymous SNV 0.032 4 24 hm5C_associated_SNPs_85146 0 0 0 0 2 AK7 chr14:96875184 3'AG 96875184 Downstream 58bp
chr14 96875241 96875241 1 + C T UCEC 96875238 + 96875218 96875258 41 AAAGCTATTTATTTTACTGTCGACGGTGATGACTTGGGCGC AAAGCTATTTATTTTACTGTCGATGGTGATGACTTGGGCGC < 41bp 0.7235273158815 0.50799953919225 0.68137705 0.4583481 prediction 0.431055553378499 Functional Loss - AK7 ENSG00000140057 CDS Human protein_coding chr14:96875238 chr14:96875241 nonsynonymous SNV 0.032 4 24 hm5C_associated_SNPs_85146 0 0 0 0 2 AK7 chr14:96875278 5'GT 96875278 Upstream 38bp
chr21 22696798 22696798 1 + G T COAD 22696796 + 22696776 22696816 41 CTGCAGGGCCTCAGGCTCTCCAGAACCCGCCATCTCCTGGT CTGCAGGGCCTCAGGCTCTCCATAACCCGCCATCTCCTGGT < 41bp 0.715526730857207 0.373987486225749 0.37828487 0.0884195 prediction 0.431053461714415 Functional Loss - NCAM2 ENSG00000154654 CDS Human protein_coding chr21:22696796 chr21:22696798 stopgain 0.418 0 23 hm5C_associated_SNPs_85148 0 0 1 0 2 NCAM2 chr21:22696703 3'AG 22696703 Downstream 96bp
chr21 22696798 22696798 1 + G T COAD 22696796 + 22696776 22696816 41 CTGCAGGGCCTCAGGCTCTCCAGAACCCGCCATCTCCTGGT CTGCAGGGCCTCAGGCTCTCCATAACCCGCCATCTCCTGGT < 41bp 0.715526730857207 0.373987486225749 0.37828487 0.0884195 prediction 0.431053461714415 Functional Loss - NCAM2 ENSG00000154654 CDS Human protein_coding chr21:22696796 chr21:22696798 stopgain 0.418 0 23 hm5C_associated_SNPs_85148 0 0 1 0 2 NCAM2 chr21:22696820 5'GT 22696820 Upstream 23bp
chr5 131995905 131995905 1 + G A THCA 131995902 + 131995882 131995922 41 CATGTCCGAGACACCAAAATCGAGGTGGCCCAGTTTGTAAA CATGTCCGAGACACCAAAATCGAAGTGGCCCAGTTTGTAAA < 41bp 0.754831447209355 0.539311771340769 0.92977834 0.8836671 prediction 0.431039351737173 Functional Loss - IL13 ENSG00000169194 CDS Human protein_coding chr5:131995902 chr5:131995905 synonymous SNV . 0 24 hm5C_associated_SNPs_85150 0 0 0 0 1 IL13 chr5:131995867 3'AG 131995867 Downstream 39bp
chr9 113496541 113496541 1 + G A SKCM 113496538 + 113496518 113496558 41 GTCTTCCTAACAGTTTTTGCCAGGATCCTGCGGGCTCCTGA GTCTTCCTAACAGTTTTTGCCAGAATCCTGCGGGCTCCTGA < 41bp 0.777815863192436 0.562298458959548 0.9126736 0.843783 prediction 0.431034808465776 Functional Loss - MUSK ENSG00000030304 CDS Human protein_coding chr9:113496538 chr9:113496541 synonymous SNV . 0 24 hm5C_associated_SNPs_85151 0 0 0 0 1 MUSK chr9:113496531 3'AG 113496531 Downstream 11bp
chr18 21059323 21059323 1 + G A KIRC 21059320 + 21059300 21059340 41 TCAAGGAAGCCCTTAGTGAACGAGAACTCTTCAATGCTGTT TCAAGGAAGCCCTTAGTGAACGAAAACTCTTCAATGCTGTT < 41bp 0.748335742513612 0.532818983715805 0.12765947 0.03898868 prediction 0.431033517595615 Functional Loss - RIOK3 ENSG00000101782 CDS Human protein_coding chr18:21059320 chr18:21059323 nonsynonymous SNV 0.945 2 24 hm5C_associated_SNPs_85152 0 0 1 0 3 RIOK3 chr18:21059281 3'AG 21059281 Downstream 43bp
chr18 21059323 21059323 1 + G A KIRC 21059320 + 21059300 21059340 41 TCAAGGAAGCCCTTAGTGAACGAGAACTCTTCAATGCTGTT TCAAGGAAGCCCTTAGTGAACGAAAACTCTTCAATGCTGTT < 41bp 0.748335742513612 0.532818983715805 0.12765947 0.03898868 prediction 0.431033517595615 Functional Loss - RIOK3 ENSG00000101782 CDS Human protein_coding chr18:21059320 chr18:21059323 nonsynonymous SNV 0.945 2 24 hm5C_associated_SNPs_85152 0 0 1 0 3 RIOK3 chr18:21059290 3'AG 21059290 Downstream 34bp
chr18 21059323 21059323 1 + G A KIRC 21059320 + 21059300 21059340 41 TCAAGGAAGCCCTTAGTGAACGAGAACTCTTCAATGCTGTT TCAAGGAAGCCCTTAGTGAACGAAAACTCTTCAATGCTGTT < 41bp 0.748335742513612 0.532818983715805 0.12765947 0.03898868 prediction 0.431033517595615 Functional Loss - RIOK3 ENSG00000101782 CDS Human protein_coding chr18:21059320 chr18:21059323 nonsynonymous SNV 0.945 2 24 hm5C_associated_SNPs_85152 0 0 1 0 3 RIOK3 chr18:21059388 5'GT 21059388 Upstream 66bp
chr9 738479 738479 1 + G T GBM 738476 + 738456 738496 41 AGCGTGTCCCACTCCAACTTCGAGATTGTGAAGCTGCTGTT AGCGTGTCCCACTCCAACTTCGATATTGTGAAGCTGCTGTT < 41bp 0.715515119132131 0.348191129241465 0.38123313 0.27099162 prediction 0.431030238264261 Functional Loss - KANK1 ENSG00000107104 CDS Human protein_coding chr9:738476 chr9:738479 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_85153 0 0 1 0 1 KANK1 chr9:738504 5'GT 738504 Upstream 26bp
chr17 70119082 70119082 1 + G A BLCA 70119079 + 70119059 70119099 41 TCGCCACACTCCTCCTCCGGCATGAGCGAGGTGCACTCCCC TCGCCACACTCCTCCTCCGGCATAAGCGAGGTGCACTCCCC < 41bp 0.790521673272295 0.575012039212831 0.27810657 0.21316704 prediction 0.431019268118929 Functional Loss - SOX9 ENSG00000125398 CDS Human protein_coding chr17:70119079 chr17:70119082 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_85159 0 0 1 0 1 SOX9 chr17:70119113 5'GT 70119113 Upstream 32bp
chr19 45974176 45974176 1 + G A STAD 45974173 + 45974153 45974193 41 GCCTGGGCCTGCCCGCCCAGCCCGAGCCCGGCCTAGGAGAC GCCTGGGCCTGCCCGCCCAGCCCAAGCCCGGCCTAGGAGAC < 41bp 0.802679253786757 0.587171388050509 0.23373282 0.14537597 prediction 0.431015731472496 Functional Loss - FOSB ENSG00000125740 CDS Human protein_coding chr19:45974173 chr19:45974176 nonsynonymous SNV 0.927 3 24 hm5C_associated_SNPs_85160 0 0 0 0 1 FOSB chr19:45974207 5'GT 45974207 Upstream 32bp
chr19 45303699 45303699 1 + G T UCEC 45303697 + 45303677 45303717 41 CCCCAGGACCCTGCCCCGGCCTGAAGGCCAGGTGAGTCCAT CCCCAGGACCCTGCCCCGGCCTTAAGGCCAGGTGAGTCCAT < 41bp 0.715505617292918 0.380159213149408 0.12232891 0.071240574 prediction 0.431011234585835 Functional Loss - CBLC ENSG00000142273 CDS Human protein_coding chr19:45303697 chr19:45303699 stoploss 0.037 0 23 hm5C_associated_SNPs_85165 0 0 0 0 2 CBLC chr19:45303638 3'AG 45303638 Downstream 62bp
chr19 45303699 45303699 1 + G T UCEC 45303697 + 45303677 45303717 41 CCCCAGGACCCTGCCCCGGCCTGAAGGCCAGGTGAGTCCAT CCCCAGGACCCTGCCCCGGCCTTAAGGCCAGGTGAGTCCAT < 41bp 0.715505617292918 0.380159213149408 0.12232891 0.071240574 prediction 0.431011234585835 Functional Loss - CBLC ENSG00000142273 CDS Human protein_coding chr19:45303697 chr19:45303699 stoploss 0.037 0 23 hm5C_associated_SNPs_85165 0 0 0 0 2 CBLC chr19:45303707 5'GT 45303707 Upstream 9bp
chr11 124013187 124013187 1 + C T SKCM 124013184 + 124013164 124013204 41 ACCTTGTGCAGCTGATTTACCACCAAAATGCAAATGGTTCC ACCTTGTGCAGCTGATTTACCACTAAAATGCAAATGGTTCC < 41bp 0.732814492729286 0.517312214372075 0.047793508 0.08013034 prediction 0.431004556714422 Functional Loss - VWA5A ENSG00000110002 CDS Human protein_coding chr11:124013184 chr11:124013187 stopgain 0.958 1 24 hm5C_associated_SNPs_85166 0 0 0 0 2 VWA5A chr11:124013149 3'AG 124013149 Downstream 39bp
chr11 124013187 124013187 1 + C T SKCM 124013184 + 124013164 124013204 41 ACCTTGTGCAGCTGATTTACCACCAAAATGCAAATGGTTCC ACCTTGTGCAGCTGATTTACCACTAAAATGCAAATGGTTCC < 41bp 0.732814492729286 0.517312214372075 0.047793508 0.08013034 prediction 0.431004556714422 Functional Loss - VWA5A ENSG00000110002 CDS Human protein_coding chr11:124013184 chr11:124013187 stopgain 0.958 1 24 hm5C_associated_SNPs_85166 0 0 0 0 2 VWA5A chr11:124013279 5'GT 124013279 Upstream 93bp
chr17 48551159 48551159 1 + G A SKCM 48551156 + 48551136 48551176 41 TTCACACACACCCGAAGGTGCAGGAAGTGCAGGTGAGGCAC TTCACACACACCCGAAGGTGCAGAAAGTGCAGGTGAGGCAC < 41bp 0.798941607493944 0.583441611340157 0.62486255 0.2251234 prediction 0.430999992307574 Functional Loss - ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48551156 chr17:48551159 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_85168 0 0 1 0 1 ACSF2 chr17:48551167 5'GT 48551167 Upstream 9bp
chr6 83872585 83872585 1 + G A HNSC 83872582 + 83872562 83872602 41 GAAGGCAGGGTATACATCAACGAGAATTTAAACCTTACGTG GAAGGCAGGGTATACATCAACGAAAATTTAAACCTTACGTG < 41bp 0.715492128420837 0.488452287040732 0.26826242 0.14266664 prediction 0.430984256841673 Functional Loss - DOPEY1 ENSG00000083097 CDS Human protein_coding chr6:83872582 chr6:83872585 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_85171 0 0 0 0 2 DOPEY1 chr6:83872509 3'AG 83872509 Downstream 77bp
chr6 83872585 83872585 1 + G A HNSC 83872582 + 83872562 83872602 41 GAAGGCAGGGTATACATCAACGAGAATTTAAACCTTACGTG GAAGGCAGGGTATACATCAACGAAAATTTAAACCTTACGTG < 41bp 0.715492128420837 0.488452287040732 0.26826242 0.14266664 prediction 0.430984256841673 Functional Loss - DOPEY1 ENSG00000083097 CDS Human protein_coding chr6:83872582 chr6:83872585 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_85171 0 0 0 0 2 DOPEY1 chr6:83872638 5'GT 83872638 Upstream 54bp
chr3 158310242 158310242 1 + C T BLCA 158310239 + 158310219 158310259 41 ACAGTGAGTCCATTCTTGCACACCGAGAAAATATGCGACAG ACAGTGAGTCCATTCTTGCACACTGAGAAAATATGCGACAG < 41bp 0.724290796478225 0.508800108488732 0.07290918 0.05306527 prediction 0.430981375978988 Functional Loss - MLF1 ENSG00000178053 CDS Human protein_coding chr3:158310239 chr3:158310242 stopgain 0.977 0 24 hm5C_associated_SNPs_85172 0 0 0 0 1 MLF1 chr3:158310223 3'AG 158310223 Downstream 20bp
chr20 32210945 32210945 1 + G A BLCA 32210942 + 32210922 32210962 41 CCAACCTGCCCCTGCTGCAGCGGGAACTGCTGCACTGCGCT CCAACCTGCCCCTGCTGCAGCGGAAACTGCTGCACTGCGCT < 41bp 0.715490347592153 0.468703093455219 0.78879017 0.314485 prediction 0.430980695184305 Functional Loss - CBFA2T2 ENSG00000078699 CDS Human protein_coding chr20:32210942 chr20:32210945 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_85173 0 0 1 0 1 CBFA2T2 chr20:32210921 3'AG 32210921 Downstream 25bp
chr20 17446059 17446059 1 + C T UCEC 17446056 + 17446036 17446076 41 ACGACGAGGTCCATCAGTGGCGGCGCAATGGGGTCGGCCTG ACGACGAGGTCCATCAGTGGCGGTGCAATGGGGTCGGCCTG < 41bp 0.721796383032066 0.50630680524898 0.28758615 0.18338606 prediction 0.430979155566172 Functional Loss - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17446056 chr20:17446059 nonsynonymous SNV 0.656 2 24 hm5C_associated_SNPs_85174 0 0 0 0 1 PCSK2 chr20:17445971 3'AG 17445971 Downstream 89bp
chr19 4306202 4306202 1 + C T COAD 4306200 + 4306180 4306220 41 GCTGTTCCGACCCAGGCGAACTCGGCGAAGGTGCAGGAGGA GCTGTTCCGACCCAGGCGAACTTGGCGAAGGTGCAGGAGGA < 41bp 0.715486477978154 0.439806447368828 0.61544406 0.2593062 prediction 0.430972955956308 Functional Loss - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4306200 chr19:4306202 nonsynonymous SNV 0.654 3 23 hm5C_associated_SNPs_85175 0 0 0 0 1 FSD1 chr19:4306195 3'AG 4306195 Downstream 8bp
chr22 40075136 40075136 1 + G A STAD 40075133 + 40075113 40075153 41 ACACGCTGCGGGACTGCACCCACGACGAGCGCAGCTGCCTG ACACGCTGCGGGACTGCACCCACAACGAGCGCAGCTGCCTG < 41bp 0.782632698877718 0.567146877111084 0.18532965 0.11471674 prediction 0.430971643533268 Functional Loss - CACNA1I ENSG00000100346 CDS Human protein_coding chr22:40075133 chr22:40075136 nonsynonymous SNV 0.856 4 24 hm5C_associated_SNPs_85177 0 0 0 0 1 CACNA1I chr22:40075112 3'AG 40075112 Downstream 25bp
chr3 195955762 195955762 1 + G A rs939885 195955759 + 195955739 195955779 41 TGACCCTGGTGGGCCTGTTTCTCGTCCCCGACGGCATCTAT TGACCCTGGTGGGCCTGTTTCTCATCCCCGACGGCATCTAT < 41bp 0.715484616144525 0.46178799698487 0.045492887 0.030398965 prediction 0.430969232289051 Functional Loss - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195955759 chr3:195955762 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_85178 0 0 1 0 2 SLC51A chr3:195955680 3'AG 195955680 Downstream 83bp
chr3 195955762 195955762 1 + G A rs939885 195955759 + 195955739 195955779 41 TGACCCTGGTGGGCCTGTTTCTCGTCCCCGACGGCATCTAT TGACCCTGGTGGGCCTGTTTCTCATCCCCGACGGCATCTAT < 41bp 0.715484616144525 0.46178799698487 0.045492887 0.030398965 prediction 0.430969232289051 Functional Loss - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195955759 chr3:195955762 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_85178 0 0 1 0 2 SLC51A chr3:195955791 5'GT 195955791 Upstream 30bp
chr3 195955761 195955761 1 + C T OV 195955759 + 195955739 195955779 41 TGACCCTGGTGGGCCTGTTTCTCGTCCCCGACGGCATCTAT TGACCCTGGTGGGCCTGTTTCTTGTCCCCGACGGCATCTAT < 41bp 0.715484616144525 0.420619269950619 0.045492887 0.016797185 prediction 0.430969232289051 Functional Loss - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195955759 chr3:195955761 synonymous SNV . 0 23 hm5C_associated_SNPs_85179 0 0 1 0 2 SLC51A chr3:195955680 3'AG 195955680 Downstream 82bp
chr3 195955761 195955761 1 + C T OV 195955759 + 195955739 195955779 41 TGACCCTGGTGGGCCTGTTTCTCGTCCCCGACGGCATCTAT TGACCCTGGTGGGCCTGTTTCTTGTCCCCGACGGCATCTAT < 41bp 0.715484616144525 0.420619269950619 0.045492887 0.016797185 prediction 0.430969232289051 Functional Loss - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195955759 chr3:195955761 synonymous SNV . 0 23 hm5C_associated_SNPs_85179 0 0 1 0 2 SLC51A chr3:195955791 5'GT 195955791 Upstream 31bp
chr10 89474612 89474612 1 + C T UCEC 89474609 + 89474589 89474629 41 TCCACCAGGTAGTGGAACTTCTGCAAGAGCAGGTAGGTGAA TCCACCAGGTAGTGGAACTTCTGTAAGAGCAGGTAGGTGAA < 41bp 0.776470160123076 0.560989080133499 0.8631984 0.4377011 prediction 0.430962159979154 Functional Loss - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89474609 chr10:89474612 stopgain 0.990 0 24 hm5C_associated_SNPs_85182 0 0 1 0 1 PAPSS2 chr10:89474620 5'GT 89474620 Upstream 9bp
chr7 150759082 150759082 1 + G T SARC 150759080 + 150759060 150759100 41 GGCTAAGATTCGGCCATGAGCAGCGCCCCTCGGCGCCCCGC GGCTAAGATTCGGCCATGAGCATCGCCCCTCGGCGCCCCGC < 41bp 0.715477921677966 0.345343060123387 0.86187816 0.1970425 prediction 0.430955843355932 Functional Loss - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150759080 chr7:150759082 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_85183 0 0 1 0 2 SLC4A2 chr7:150759012 3'AG 150759012 Downstream 71bp
chr7 150759082 150759082 1 + G T SARC 150759080 + 150759060 150759100 41 GGCTAAGATTCGGCCATGAGCAGCGCCCCTCGGCGCCCCGC GGCTAAGATTCGGCCATGAGCATCGCCCCTCGGCGCCCCGC < 41bp 0.715477921677966 0.345343060123387 0.86187816 0.1970425 prediction 0.430955843355932 Functional Loss - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150759080 chr7:150759082 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_85183 0 0 1 0 2 SLC4A2 chr7:150759125 5'GT 150759125 Upstream 44bp
chr3 38407198 38407198 1 + A C rs2234611 38407197 + 38407177 38407217 41 GTGGGTGGTGCTCAGGCTCTCAGCTGCCTCACGGGGTCCCG GTGGGTGGTGCTCAGGCTCTCCGCTGCCTCACGGGGTCCCG < 41bp 0.837451856495683 0.621976715421568 0.74766946 0.119276345 prediction 0.430950282148229 Functional Loss - XYLB ENSG00000093217 CDS Human protein_coding chr3:38407197 chr3:38407198 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_85185 0 0 1 0 2 XYLB chr3:38407099 3'AG 38407099 Downstream 100bp
chr3 38407198 38407198 1 + A C rs2234611 38407197 + 38407177 38407217 41 GTGGGTGGTGCTCAGGCTCTCAGCTGCCTCACGGGGTCCCG GTGGGTGGTGCTCAGGCTCTCCGCTGCCTCACGGGGTCCCG < 41bp 0.837451856495683 0.621976715421568 0.74766946 0.119276345 prediction 0.430950282148229 Functional Loss - XYLB ENSG00000093217 CDS Human protein_coding chr3:38407197 chr3:38407198 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_85185 0 0 1 0 2 XYLB chr3:38407227 5'GT 38407227 Upstream 30bp
chr17 40723571 40723571 1 + C T UCEC 40723568 + 40723548 40723588 41 TCTGCTGCCCTCGCCAGACCCTGCGGGAGATTGTGATTGGC TCTGCTGCCCTCGCCAGACCCTGTGGGAGATTGTGATTGGC < 41bp 0.750281256377624 0.534806658565669 0.32021534 0.12882796 prediction 0.430949195623911 Functional Loss - MLX ENSG00000108788 CDS Human protein_coding chr17:40723568 chr17:40723571 nonsynonymous SNV 0.489 5 24 hm5C_associated_SNPs_85186 0 0 1 0 1 MLX chr17:40723565 3'AG 40723565 Downstream 7bp
chr1 65247071 65247071 1 + G T UCEC 65247069 + 65247049 65247089 41 ATGTATTGTATCAGCTTGCACAGGATGAAGGTAGTTACGTT ATGTATTGTATCAGCTTGCACATGATGAAGGTAGTTACGTT < 41bp 0.715473929415973 0.376257529945891 0.37504986 0.08402401 prediction 0.430947858831946 Functional Loss - RAVER2 ENSG00000162437 CDS Human protein_coding chr1:65247069 chr1:65247071 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_85187 0 0 1 0 1 RAVER2 chr1:65247063 3'AG 65247063 Downstream 9bp
chr12 122481813 122481813 1 + C T SKCM 122481811 + 122481791 122481831 41 GACGATAACAGCAACCAGAGCTCCATCGCAGATGCCTCCCC GACGATAACAGCAACCAGAGCTTCATCGCAGATGCCTCCCC < 41bp 0.715463452060051 0.405295395569651 0.1332112 0.04240799 prediction 0.430926904120103 Functional Loss - BCL7A ENSG00000110987 CDS Human protein_coding chr12:122481811 chr12:122481813 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_85190 0 0 1 0 1 BCL7A chr12:122481792 3'AG 122481792 Downstream 22bp
chr19 45561090 45561090 1 + G A LUSC 45561087 + 45561067 45561107 41 TAGAGAAGGCGGCAGAAAAGCCAGAGGAGGAGGAGTCAGCG TAGAGAAGGCGGCAGAAAAGCCAAAGGAGGAGGAGTCAGCG < 41bp 0.795124561842032 0.579664600253814 0.89245707 0.7756255 prediction 0.430919923176435 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45561087 chr19:45561090 nonsynonymous SNV 0.891 0 24 hm5C_associated_SNPs_85194 0 0 1 0 3 CLASRP chr19:45561008 3'AG 45561008 Downstream 83bp
chr19 45561090 45561090 1 + G A LUSC 45561087 + 45561067 45561107 41 TAGAGAAGGCGGCAGAAAAGCCAGAGGAGGAGGAGTCAGCG TAGAGAAGGCGGCAGAAAAGCCAAAGGAGGAGGAGTCAGCG < 41bp 0.795124561842032 0.579664600253814 0.89245707 0.7756255 prediction 0.430919923176435 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45561087 chr19:45561090 nonsynonymous SNV 0.891 0 24 hm5C_associated_SNPs_85194 0 0 1 0 3 CLASRP chr19:45561140 5'GT 45561140 Upstream 51bp
chr19 45561090 45561090 1 + G A LUSC 45561087 + 45561067 45561107 41 TAGAGAAGGCGGCAGAAAAGCCAGAGGAGGAGGAGTCAGCG TAGAGAAGGCGGCAGAAAAGCCAAAGGAGGAGGAGTCAGCG < 41bp 0.795124561842032 0.579664600253814 0.89245707 0.7756255 prediction 0.430919923176435 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45561087 chr19:45561090 nonsynonymous SNV 0.891 0 24 hm5C_associated_SNPs_85194 0 0 1 0 3 CLASRP chr19:45561156 5'GT 45561156 Upstream 67bp
chr12 58335595 58335595 1 + C T STAD 58335593 + 58335573 58335613 41 AGCGTCTGGCCCAGGGGAATCCCCAGCAAGGGTTCTTCTCC AGCGTCTGGCCCAGGGGAATCCTCAGCAAGGGTTCTTCTCC < 41bp 0.823953338509742 0.60849548446787 0.67054385 0.24210015 prediction 0.430915708083743 Functional Loss - ATP23 ENSG00000166896 CDS Human protein_coding chr12:58335593 chr12:58335595 synonymous SNV . 0 23 hm5C_associated_SNPs_85196 0 0 1 0 1 ATP23 chr12:58335671 5'GT 58335671 Upstream 77bp
chr1 161476325 161476325 1 + C T STAD 161476323 + 161476303 161476343 41 AACAATGACAGCGGGGAGTACACGTGCCAGACTGGCCAGAC AACAATGACAGCGGGGAGTACATGTGCCAGACTGGCCAGAC < 41bp 0.764189883685051 0.54873209026137 0.4135163 0.18583411 prediction 0.430915586847362 Functional Loss - FCGR2A ENSG00000143226 CDS Human protein_coding chr1:161476323 chr1:161476325 nonsynonymous SNV 0.215 1 23 hm5C_associated_SNPs_85197 0 0 0 0 1 FCGR2A chr1:161476381 5'GT 161476381 Upstream 57bp
chr19 58048653 58048653 1 + C T SKCM 58048650 + 58048630 58048670 41 AGGAGTGTCACAGGCCAGGACTCCAAAGCTAGGTCCTTCCA AGGAGTGTCACAGGCCAGGACTCTAAAGCTAGGTCCTTCCA < 41bp 0.764722026058877 0.549268442159617 0.9601338 0.9331182 prediction 0.430907167798518 Functional Loss - ZNF549 ENSG00000121406 CDS Human protein_coding chr19:58048650 chr19:58048653 nonsynonymous SNV 0.026 0 24 hm5C_associated_SNPs_85199 0 0 1 0 1 ZNF549 chr19:58048572 3'AG 58048572 Downstream 82bp
chr3 183896907 183896907 1 + G T LUAD 183896904 + 183896884 183896924 41 TTGTGCTCATATATGAGCTGCTGGATGGTGAGGCTGGCGGG TTGTGCTCATATATGAGCTGCTGTATGGTGAGGCTGGCGGG < 41bp 0.715453261811677 0.383990046789569 0.464975 0.37453324 prediction 0.430906523623354 Functional Loss - AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183896904 chr3:183896907 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_85200 0 0 1 0 1 AP2M1 chr3:183896910 5'GT 183896910 Upstream 4bp
chr11 20657896 20657896 1 + G A UCEC 20657893 + 20657873 20657913 41 GTTTACCCGGAAGCCTTAACCAGGCTGCCTCTCTCTCCGTT GTTTACCCGGAAGCCTTAACCAGACTGCCTCTCTCTCCGTT < 41bp 0.80971956137045 0.594277181056587 0.9119842 0.59668875 prediction 0.430884760627725 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20657893 chr11:20657896 synonymous SNV . 0 24 hm5C_associated_SNPs_85209 0 0 0 0 2 SLC6A5 chr11:20657853 3'AG 20657853 Downstream 44bp
chr11 20657896 20657896 1 + G A UCEC 20657893 + 20657873 20657913 41 GTTTACCCGGAAGCCTTAACCAGGCTGCCTCTCTCTCCGTT GTTTACCCGGAAGCCTTAACCAGACTGCCTCTCTCTCCGTT < 41bp 0.80971956137045 0.594277181056587 0.9119842 0.59668875 prediction 0.430884760627725 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20657893 chr11:20657896 synonymous SNV . 0 24 hm5C_associated_SNPs_85209 0 0 0 0 2 SLC6A5 chr11:20657965 5'GT 20657965 Upstream 70bp
chr4 156698735 156698735 1 + G A BLCA 156698732 + 156698712 156698752 41 AGATGTTTTTCGTCTTTTGCCAAGAATCTGGTTATGATACA AGATGTTTTTCGTCTTTTGCCAAAAATCTGGTTATGATACA < 41bp 0.756071494442622 0.540629534665618 0.11252308 0.08473277 prediction 0.430883919554006 Functional Loss - GUCY1B3 ENSG00000061918 CDS Human protein_coding chr4:156698732 chr4:156698735 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_85212 0 0 0 0 2 GUCY1B3 chr4:156698676 3'AG 156698676 Downstream 60bp
chr4 156698735 156698735 1 + G A BLCA 156698732 + 156698712 156698752 41 AGATGTTTTTCGTCTTTTGCCAAGAATCTGGTTATGATACA AGATGTTTTTCGTCTTTTGCCAAAAATCTGGTTATGATACA < 41bp 0.756071494442622 0.540629534665618 0.11252308 0.08473277 prediction 0.430883919554006 Functional Loss - GUCY1B3 ENSG00000061918 CDS Human protein_coding chr4:156698732 chr4:156698735 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_85212 0 0 0 0 2 GUCY1B3 chr4:156698794 5'GT 156698794 Upstream 60bp
chr15 27188440 27188440 1 + C T UCEC 27188438 + 27188418 27188458 41 CCCAAAGTGGCCTACGCCACCGCCATGGACTGGTTCATAGC CCCAAAGTGGCCTACGCCACCGTCATGGACTGGTTCATAGC < 41bp 0.871998609467046 0.65656205816163 0.37630308 0.07846749 prediction 0.430873102610831 Functional Loss - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27188438 chr15:27188440 nonsynonymous SNV 0.995 5 23 hm5C_associated_SNPs_85214 0 0 0 0 1 GABRA5 chr15:27188362 3'AG 27188362 Downstream 79bp
chr12 58016897 58016897 1 + G A LGG 58016894 + 58016874 58016914 41 CGCTGGCCACCACCAATCTACTGGTGGATGCTGGTGGGAAA CGCTGGCCACCACCAATCTACTGATGGATGCTGGTGGGAAA < 41bp 0.715436433055327 0.466615139576048 0.39432794 0.16877678 prediction 0.430872866110655 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58016894 chr12:58016897 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_85215 0 0 1 3 2 SLC26A10 chr12:58016807 3'AG 58016807 Downstream 91bp
chr12 58016897 58016897 1 + G A LGG 58016894 + 58016874 58016914 41 CGCTGGCCACCACCAATCTACTGGTGGATGCTGGTGGGAAA CGCTGGCCACCACCAATCTACTGATGGATGCTGGTGGGAAA < 41bp 0.715436433055327 0.466615139576048 0.39432794 0.16877678 prediction 0.430872866110655 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58016894 chr12:58016897 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_85215 0 0 1 3 2 SLC26A10 chr12:58016920 5'GT 58016920 Upstream 24bp
chr11 45946421 45946421 1 + G T UCEC 45946418 + 45946398 45946438 41 AACCACAGGCCCTGGCCTGCCTTGGGCCGGGGATTTAACAC AACCACAGGCCCTGGCCTGCCTTTGGCCGGGGATTTAACAC < 41bp 0.715432240256038 0.317527985130451 0.14352107 0.061681807 prediction 0.430864480512076 Functional Loss - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45946418 chr11:45946421 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_85216 0 0 0 0 2 LARGE2 chr11:45946336 3'AG 45946336 Downstream 86bp
chr11 45946421 45946421 1 + G T UCEC 45946418 + 45946398 45946438 41 AACCACAGGCCCTGGCCTGCCTTGGGCCGGGGATTTAACAC AACCACAGGCCCTGGCCTGCCTTTGGCCGGGGATTTAACAC < 41bp 0.715432240256038 0.317527985130451 0.14352107 0.061681807 prediction 0.430864480512076 Functional Loss - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45946418 chr11:45946421 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_85216 0 0 0 0 2 LARGE2 chr11:45946440 5'GT 45946440 Upstream 20bp
chr3 183508704 183508704 1 + C T UCEC 183508701 + 183508681 183508721 41 ACCTGCAAGGCTGCCACCCCCACCGTCGTCAGCGCCACGTC ACCTGCAAGGCTGCCACCCCCACTGTCGTCAGCGCCACGTC < 41bp 0.715430753189515 0.495887540890609 0.3509915 0.3351949 prediction 0.430861506379031 Functional Loss - YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183508701 chr3:183508704 synonymous SNV . 0 24 hm5C_associated_SNPs_85218 0 0 1 0 1 YEATS2 chr3:183508768 5'GT 183508768 Upstream 65bp
chrX 47083851 47083851 1 + G A UCEC 47083848 + 47083828 47083868 41 GACCAGGCTTCAGCCACGTCCTCGGATGAGGTGCAGTCTCC GACCAGGCTTCAGCCACGTCCTCAGATGAGGTGCAGTCTCC < 41bp 0.715423350505631 0.467620018088371 0.5052723 0.43340498 prediction 0.430846701011262 Functional Loss - CDK16 ENSG00000102225 CDS Human other chrX:47083848 chrX:47083851 synonymous SNV . 0 24 hm5C_associated_SNPs_85220 0 0 1 0 2 CDK16 chrX:47083784 3'AG 47083784 Downstream 68bp
chrX 47083851 47083851 1 + G A UCEC 47083848 + 47083828 47083868 41 GACCAGGCTTCAGCCACGTCCTCGGATGAGGTGCAGTCTCC GACCAGGCTTCAGCCACGTCCTCAGATGAGGTGCAGTCTCC < 41bp 0.715423350505631 0.467620018088371 0.5052723 0.43340498 prediction 0.430846701011262 Functional Loss - CDK16 ENSG00000102225 CDS Human protein_coding chrX:47083848 chrX:47083851 synonymous SNV . 0 24 hm5C_associated_SNPs_85220 0 0 1 0 2 CDK16 chrX:47083917 5'GT 47083917 Upstream 67bp
chr11 17758117 17758117 1 + C T STAD 17758115 + 17758095 17758135 41 CCCGTACTCGTCCCGCTACGCGCGGGTAAGTGACAATTTAC CCCGTACTCGTCCCGCTACGCGTGGGTAAGTGACAATTTAC < 41bp 0.715422200232783 0.474604502131137 0.89020115 0.89094263 prediction 0.430844400465566 Functional Loss - KCNC1 ENSG00000129159 CDS Human protein_coding chr11:17758115 chr11:17758117 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_85221 0 0 0 0 1 KCNC1 chr11:17758119 5'GT 17758119 Upstream 3bp
chr1 113058976 113058976 1 + G A SKCM 113058973 + 113058953 113058993 41 GCCAAGGCCTTCGTGGATGCCAAGGAGAAGAGGCTTAAGGA GCCAAGGCCTTCGTGGATGCCAAAGAGAAGAGGCTTAAGGA < 41bp 0.715419302135059 0.481517474149125 0.47313482 0.28610164 prediction 0.430838604270118 Functional Loss - WNT2B ENSG00000134245 CDS Human protein_coding chr1:113058973 chr1:113058976 synonymous SNV . 0 24 hm5C_associated_SNPs_85224 0 0 0 0 1 WNT2B chr1:113059039 5'GT 113059039 Upstream 64bp
chr17 37819124 37819124 1 + T C UCEC 37819123 + 37819103 37819143 41 TGTTTGAATTTGCCTTTCACCTGCGACAGCGCATCAGCGAG TGTTTGAATTTGCCTTTCACCCGCGACAGCGCATCAGCGAG < 41bp 0.777479073532568 0.562060327343849 0.38731304 0.43691158 prediction 0.430837492377438 Functional Loss - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37819123 chr17:37819124 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_85225 0 0 1 1 1 STARD3 chr17:37819057 3'AG 37819057 Downstream 68bp
chr11 47259709 47259709 1 + G A LIHC 47259706 + 47259686 47259726 41 CAGCTTAATGAATTCAATCCCATGGGGGACACGCTGGCCTC CAGCTTAATGAATTCAATCCCATAGGGGACACGCTGGCCTC < 41bp 0.715417836794557 0.474944854380158 0.8746425 0.279971 prediction 0.430835673589115 Functional Loss - DDB2 ENSG00000134574 CDS Human protein_coding chr11:47259706 chr11:47259709 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_85226 0 0 1 0 2 DDB2 chr11:47259689 3'AG 47259689 Downstream 21bp
chr11 47259709 47259709 1 + G A LIHC 47259706 + 47259686 47259726 41 CAGCTTAATGAATTCAATCCCATGGGGGACACGCTGGCCTC CAGCTTAATGAATTCAATCCCATAGGGGACACGCTGGCCTC < 41bp 0.715417836794557 0.474944854380158 0.8746425 0.279971 prediction 0.430835673589115 Functional Loss - DDB2 ENSG00000134574 CDS Human protein_coding chr11:47259706 chr11:47259709 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_85226 0 0 1 0 2 DDB2 chr11:47259734 5'GT 47259734 Upstream 26bp
chr9 140128709 140128709 1 + G A rs146097023 140128706 + 140128686 140128726 41 CGCGGCCGCGTGGCCCAGGTCGTGAGGACAGTCATCAATGC CGCGGCCGCGTGGCCCAGGTCGTAAGGACAGTCATCAATGC < 41bp 0.799893939330276 0.584487761809426 0.64029944 0.4409327 prediction 0.430812355041698 Functional Loss - SLC34A3 ENSG00000198569 CDS Human protein_coding chr9:140128706 chr9:140128709 synonymous SNV . 0 24 hm5C_associated_SNPs_85233 1 0 0 0 1 SLC34A3 chr9:140128728 5'GT 140128728 Upstream 20bp
chr11 120918361 120918361 1 + C T BLCA 120918359 + 120918339 120918379 41 TAGATCTTTCTGACAACAAACTCGAAGACTGGCATGAGGTG TAGATCTTTCTGACAACAAACTTGAAGACTGGCATGAGGTG < 41bp 0.715405312828366 0.409008165276311 0.32229844 0.19949251 prediction 0.430810625656732 Functional Loss - TBCEL ENSG00000154114 CDS Human protein_coding chr11:120918359 chr11:120918361 synonymous SNV . 0 23 hm5C_associated_SNPs_85234 0 0 0 0 1 TBCEL chr11:120918376 5'GT 120918376 Upstream 16bp
chr19 55019130 55019130 1 + C T BLCA 55019128 + 55019108 55019148 41 GCCCTTCCCAGACCCTCCATCTCGGCTGAGCCAGGCACTGT GCCCTTCCCAGACCCTCCATCTTGGCTGAGCCAGGCACTGT < 41bp 0.818337406934142 0.602934921580199 0.17254406 0.21485832 prediction 0.430804970707884 Functional Loss - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019128 chr19:55019130 nonsynonymous SNV 0.011 0 23 hm5C_associated_SNPs_85236 0 0 0 2 1 LAIR2 chr19:55019106 3'AG 55019106 Downstream 25bp
chr3 41279564 41279564 1 + G A UCEC 41279561 + 41279541 41279581 41 GAGAACCCCTTGGATATCGCCAGGATGGTATGTGTCTCATA GAGAACCCCTTGGATATCGCCAGAATGGTATGTGTCTCATA < 41bp 0.751029643021024 0.535635084962304 0.6152022 0.41939783 prediction 0.43078911611744 Functional Loss - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41279561 chr3:41279564 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_85240 0 0 1 0 2 CTNNB1 chr3:41279507 3'AG 41279507 Downstream 58bp
chr3 41279564 41279564 1 + G A UCEC 41279561 + 41279541 41279581 41 GAGAACCCCTTGGATATCGCCAGGATGGTATGTGTCTCATA GAGAACCCCTTGGATATCGCCAGAATGGTATGTGTCTCATA < 41bp 0.751029643021024 0.535635084962304 0.6152022 0.41939783 prediction 0.43078911611744 Functional Loss - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41279561 chr3:41279564 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_85240 0 0 1 0 2 CTNNB1 chr3:41279567 5'GT 41279567 Upstream 4bp
chr3 135974715 135974715 1 + G T LUAD 135974712 + 135974692 135974732 41 TTGTAGGGAAAGCTAACAGCCAGGGAGAGGATCAGTCTCTT TTGTAGGGAAAGCTAACAGCCAGTGAGAGGATCAGTCTCTT < 41bp 0.715393952315138 0.31806009174707 0.81447166 0.51074207 prediction 0.430787904630276 Functional Loss - PCCB ENSG00000114054 CDS Human protein_coding chr3:135974712 chr3:135974715 nonsynonymous SNV 0.992 5 24 hm5C_associated_SNPs_85242 0 0 1 0 1 PCCB chr3:135974698 3'AG 135974698 Downstream 18bp
chr6 161139465 161139465 1 + G A UCEC 161139462 + 161139442 161139482 41 CAGACCCCTCACACACATAACAGGACACCAGAAAACTTCCC CAGACCCCTCACACACATAACAGAACACCAGAAAACTTCCC < 41bp 0.770941298286945 0.55554780898092 0.08002758 0.07347128 prediction 0.43078697861205 Functional Loss - PLG ENSG00000122194 CDS Human protein_coding chr6:161139462 chr6:161139465 synonymous SNV . 0 24 hm5C_associated_SNPs_85243 0 0 0 0 1 PLG chr6:161139488 5'GT 161139488 Upstream 24bp
chr9 136310894 136310894 1 + C T STAD 136310892 + 136310872 136310912 41 GGACGGGGGCTCAAGCTGCACACGTGTGGACCCCTGCGGCA GGACGGGGGCTCAAGCTGCACATGTGTGGACCCCTGCGGCA < 41bp 0.792381670617007 0.576990552874955 0.30165368 0.31623754 prediction 0.430782235484103 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136310892 chr9:136310894 synonymous SNV . 0 23 hm5C_associated_SNPs_85245 0 0 0 0 1 ADAMTS13 chr9:136310820 3'AG 136310820 Downstream 75bp
chr10 118368605 118368605 1 + C T UCEC 118368603 + 118368583 118368623 41 AGACACAGTGCGGGAAGACACGCTGCTCACCCTCACGCCCT AGACACAGTGCGGGAAGACACGTTGCTCACCCTCACGCCCT < 41bp 0.810169103595472 0.594778550312061 0.67600703 0.9057823 prediction 0.430781106566821 Functional Loss - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118368603 chr10:118368605 synonymous SNV . 0 23 hm5C_associated_SNPs_85246 0 0 0 0 1 PNLIPRP1 chr10:118368565 3'AG 118368565 Downstream 41bp
chr1 21902372 21902372 1 + G A LUAD 21902369 + 21902349 21902389 41 TGGTCACTGCGGACCATTCCCACGTCTTCACATTTGGTGGA TGGTCACTGCGGACCATTCCCACATCTTCACATTTGGTGGA < 41bp 0.715387838081517 0.468135944583067 0.20870623 0.10068673 prediction 0.430775676163035 Functional Loss - ALPL ENSG00000162551 CDS Human protein_coding chr1:21902369 chr1:21902372 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_85248 1 0 0 0 1 ALPL chr1:21902417 5'GT 21902417 Upstream 46bp
chr8 65494286 65494286 1 - C T TGCT 65494289 - 65494269 65494309 41 AGGGAGGCAGCCGAGATGGCCTGGCCCTGGTTGAGGTAGGC AGGGAGGCAGCCGAGATGGCCTGACCCTGGTTGAGGTAGGC < 41bp 0.761487597823338 0.546101711828188 0.78751576 0.41330352 prediction 0.430771771990299 Functional Loss - BHLHE22 ENSG00000180828 CDS Human protein_coding chr8:65494289 chr8:65494286 synonymous SNV . 0 24 hm5C_associated_SNPs_85249 0 0 0 0 1 BHLHE22 chr8:65494275 5'GT 65494275 Upstream 12bp
chr5 75597323 75597323 1 + G A SKCM 75597320 + 75597300 75597340 41 AATGGATTGACCATCTCAGCCTGGAACTCTCTTGACGTGGT AATGGATTGACCATCTCAGCCTGAAACTCTCTTGACGTGGT < 41bp 0.773056651349801 0.557671291907512 0.13471013 0.063117415 prediction 0.43077071888458 Functional Loss - SV2C ENSG00000122012 CDS Human protein_coding chr5:75597320 chr5:75597323 stopgain 0.998 1 24 hm5C_associated_SNPs_85250 0 0 0 0 1 SV2C chr5:75597370 5'GT 75597370 Upstream 48bp
chr8 118184870 118184870 1 + C T SKCM 118184868 + 118184848 118184888 41 ACTCACCATTCAGATGGAATCTCCAGTTGACCAGGACCCCG ACTCACCATTCAGATGGAATCTTCAGTTGACCAGGACCCCG < 41bp 0.856306019930613 0.640923088754359 0.9410223 0.4131636 prediction 0.430765862352506 Functional Loss - SLC30A8 ENSG00000164756 CDS Human protein_coding chr8:118184868 chr8:118184870 nonsynonymous SNV 0.921 0 23 hm5C_associated_SNPs_85252 0 0 0 0 1 SLC30A8 chr8:118184775 3'AG 118184775 Downstream 96bp
chr1 107691411 107691411 1 + G A SKCM 107691408 + 107691388 107691428 41 CAAAATATCTGAAAGTGAAACTCGATCCTCCGGATATTACC CAAAATATCTGAAAGTGAAACTCAATCCTCCGGATATTACC < 41bp 0.72190865700754 0.506526764903228 0.4071405 0.63386357 prediction 0.430763784208625 Functional Loss - NTNG1 ENSG00000162631 CDS Human protein_coding chr1:107691408 chr1:107691411 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_85254 0 0 0 0 1 NTNG1 chr1:107691461 5'GT 107691461 Upstream 51bp
chr7 141336807 141336807 1 + G T SARC 141336805 + 141336785 141336825 41 ATCAAAGCAGCCCACTTTTTCAGCACTCTTAAGGTAAATGT ATCAAAGCAGCCCACTTTTTCATCACTCTTAAGGTAAATGT < 41bp 0.715378095738566 0.377778105744299 0.40709713 0.08527768 prediction 0.430756191477133 Functional Loss - AGK ENSG00000006530 CDS Human protein_coding chr7:141336805 chr7:141336807 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_85256 0 0 1 0 2 AGK chr7:141336760 3'AG 141336760 Downstream 48bp
chr7 141336807 141336807 1 + G T SARC 141336805 + 141336785 141336825 41 ATCAAAGCAGCCCACTTTTTCAGCACTCTTAAGGTAAATGT ATCAAAGCAGCCCACTTTTTCATCACTCTTAAGGTAAATGT < 41bp 0.715378095738566 0.377778105744299 0.40709713 0.08527768 prediction 0.430756191477133 Functional Loss - AGK ENSG00000006530 CDS Human protein_coding chr7:141336805 chr7:141336807 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_85256 0 0 1 0 2 AGK chr7:141336817 5'GT 141336817 Upstream 11bp
chr1 40229398 40229398 1 - C T SKCM 40229401 - 40229381 40229421 41 ACGAGCTCTACGTCAGCTTCCAGGACCTCGGCTGGCTGGTA ACGAGCTCTACGTCAGCTTCCAGAACCTCGGCTGGCTGGTA < 41bp 0.801331769239876 0.585961730644579 0.7841865 0.6334247 prediction 0.430740077190593 Functional Loss - BMP8B;PPIE ENSG00000084072;ENSG00000116985 CDS Human other chr1:40229401 chr1:40229398 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_85260 0 0 0 0 2 BMP8B;PPIE chr1:40229384 5'GT 40229384 Upstream 15bp
chr1 40229398 40229398 1 - C T SKCM 40229401 - 40229381 40229421 41 ACGAGCTCTACGTCAGCTTCCAGGACCTCGGCTGGCTGGTA ACGAGCTCTACGTCAGCTTCCAGAACCTCGGCTGGCTGGTA < 41bp 0.801331769239876 0.585961730644579 0.7841865 0.6334247 prediction 0.430740077190593 Functional Loss - BMP8B;PPIE ENSG00000084072;ENSG00000116985 CDS Human protein_coding chr1:40229401 chr1:40229398 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_85260 0 0 0 0 2 BMP8B chr1:40229463 3'AG 40229463 Downstream 66bp
chr19 36166831 36166831 1 + G A STAD 36166828 + 36166808 36166848 41 ACTCCGGAGGTGGTGTTCCCCTGGCCCCCACTGTGCTGTCG ACTCCGGAGGTGGTGTTCCCCTGACCCCCACTGTGCTGTCG < 41bp 0.802744990176427 0.587378674881024 0.50150514 0.1892559 prediction 0.430732630590807 Functional Loss - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36166828 chr19:36166831 stopgain 1.000 1 24 hm5C_associated_SNPs_85262 0 0 0 0 2 UPK1A chr19:36166742 3'AG 36166742 Downstream 90bp
chr19 36166831 36166831 1 + G A STAD 36166828 + 36166808 36166848 41 ACTCCGGAGGTGGTGTTCCCCTGGCCCCCACTGTGCTGTCG ACTCCGGAGGTGGTGTTCCCCTGACCCCCACTGTGCTGTCG < 41bp 0.802744990176427 0.587378674881024 0.50150514 0.1892559 prediction 0.430732630590807 Functional Loss - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36166828 chr19:36166831 stopgain 1.000 1 24 hm5C_associated_SNPs_85262 0 0 0 0 2 UPK1A chr19:36166921 5'GT 36166921 Upstream 91bp
chr19 1255633 1255633 1 + G T LUAD 1255631 + 1255611 1255651 41 TACCTCCTGCGAGAAGCTCACGGCTGCCCCCTCAGCCTCCC TACCTCCTGCGAGAAGCTCACGTCTGCCCCCTCAGCCTCCC < 41bp 0.715363046574316 0.353998476274006 0.73816526 0.07710147 prediction 0.430726093148632 Functional Loss - MIDN ENSG00000167470 CDS Human protein_coding chr19:1255631 chr19:1255633 nonsynonymous SNV 0.019 0 23 hm5C_associated_SNPs_85264 0 0 1 0 1 MIDN chr19:1255693 5'GT 1255693 Upstream 61bp
chr3 31574804 31574804 1 + G A COAD 31574801 + 31574781 31574821 41 CATCATCCACGAGTTCGACCCGTGGTAAGTGCCTCGCCGCC CATCATCCACGAGTTCGACCCGTAGTAAGTGCCTCGCCGCC < 41bp 0.796207673073854 0.580850679480154 0.5927901 0.14431438 prediction 0.4307139871874 Functional Loss - STT3B ENSG00000163527 CDS Human protein_coding chr3:31574801 chr3:31574804 stopgain 0.999 1 24 hm5C_associated_SNPs_85266 0 0 0 0 1 STT3B chr3:31574804 5'GT 31574804 Upstream 1bp
chr11 76778092 76778092 1 + G C rs527349486 76778091 + 76778071 76778111 41 AGCCTCCGCTCCAGCGCCCGCGCCGTGCCCTGCATCCCGGG AGCCTCCGCTCCAGCGCCCGCCCCGTGCCCTGCATCCCGGG < 41bp 0.715356621174514 0.438654939042828 0.46210882 0.23923078 prediction 0.430713242349028 Functional Loss - CAPN5 ENSG00000149260 UTR5 Human protein_coding chr11:76778091 chr11:76778092 . . 0 22 hm5C_associated_SNPs_85267 0 0 0 0 1 CAPN5 chr11:76778141 5'GT 76778141 Upstream 50bp
chr11 129993558 129993558 1 + G A CESC 129993555 + 129993535 129993575 41 GCCCTGCCGGGCCGTGATGCCTCGTTGGTACTTCGACCTCT GCCCTGCCGGGCCGTGATGCCTCATTGGTACTTCGACCTCT < 41bp 0.785776381656036 0.570419774808102 0.144862 0.14412531 prediction 0.430713213695867 Functional Loss - APLP2 ENSG00000084234 CDS Human protein_coding chr11:129993555 chr11:129993558 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_85268 0 0 1 0 1 APLP2 chr11:129993507 3'AG 129993507 Downstream 52bp
chr5 169023586 169023586 1 + C T COAD 169023583 + 169023563 169023603 41 AGTTACAAATTGCCACGTTGCTACAGATGAAAGGGTCTCAA AGTTACAAATTGCCACGTTGCTATAGATGAAAGGGTCTCAA < 41bp 0.754551370775561 0.539198880300642 0.817954 0.3661417 prediction 0.430704980949838 Functional Loss - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169023583 chr5:169023586 stopgain 0.936 1 24 hm5C_associated_SNPs_85272 0 0 1 0 1 SPDL1 chr5:169023565 3'AG 169023565 Downstream 22bp
chr11 120744829 120744829 1 + G A BLCA 120744826 + 120744806 120744846 41 ATGCTGTGGTGACTGCGGTGCAGGAACTGAACCGGAGCCAA ATGCTGTGGTGACTGCGGTGCAGAAACTGAACCGGAGCCAA < 41bp 0.715352463614705 0.474913938547973 0.7716423 0.72441405 prediction 0.43070492722941 Functional Loss - GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120744826 chr11:120744829 nonsynonymous SNV 0.968 1 24 hm5C_associated_SNPs_85273 0 0 0 0 2 GRIK4 chr11:120744775 3'AG 120744775 Downstream 55bp
chr11 120744829 120744829 1 + G A BLCA 120744826 + 120744806 120744846 41 ATGCTGTGGTGACTGCGGTGCAGGAACTGAACCGGAGCCAA ATGCTGTGGTGACTGCGGTGCAGAAACTGAACCGGAGCCAA < 41bp 0.715352463614705 0.474913938547973 0.7716423 0.72441405 prediction 0.43070492722941 Functional Loss - GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120744826 chr11:120744829 nonsynonymous SNV 0.968 1 24 hm5C_associated_SNPs_85273 0 0 0 0 2 GRIK4 chr11:120744927 5'GT 120744927 Upstream 99bp
chr6 52051236 52051236 1 + C T SKCM 52051234 + 52051214 52051254 41 ATTGGAAGAAACAACGATGACTCCTGGGAAGACCTCATTGG ATTGGAAGAAACAACGATGACTTCTGGGAAGACCTCATTGG < 41bp 0.715349149216497 0.462997935806563 0.21098393 0.15882626 prediction 0.430698298432994 Functional Loss - IL17A ENSG00000112115 CDS Human protein_coding chr6:52051234 chr6:52051236 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_85274 0 0 0 0 1 IL17A chr6:52051256 5'GT 52051256 Upstream 21bp
chr11 10521674 10521674 1 + C T STAD 10521671 + 10521651 10521691 41 GTGGATGATGAGTCCAAGCACAGCGACCACATGTTTTCCGA GTGGATGATGAGTCCAAGCACAGTGACCACATGTTTTCCGA < 41bp 0.715348916097595 0.492935726374306 0.18619686 0.1360121 prediction 0.43069783219519 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10521671 chr11:10521674 synonymous SNV . 0 24 hm5C_associated_SNPs_85275 0 0 1 0 1 AMPD3 chr11:10521633 3'AG 10521633 Downstream 42bp
chr17 73493926 73493926 1 + C T STAD 73493923 + 73493903 73493943 41 CTATGGCAACGGGGAAAAACCTCCAGTCCATTCCCAAGAAG CTATGGCAACGGGGAAAAACCTCTAGTCCATTCCCAAGAAG < 41bp 0.766375072146407 0.551026945499245 0.9556328 0.914596 prediction 0.430696253294324 Functional Loss - TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73493923 chr17:73493926 stopgain 0.988 0 24 hm5C_associated_SNPs_85276 0 0 1 0 2 TMEM94 chr17:73493862 3'AG 73493862 Downstream 65bp
chr17 73493926 73493926 1 + C T STAD 73493923 + 73493903 73493943 41 CTATGGCAACGGGGAAAAACCTCCAGTCCATTCCCAAGAAG CTATGGCAACGGGGAAAAACCTCTAGTCCATTCCCAAGAAG < 41bp 0.766375072146407 0.551026945499245 0.9556328 0.914596 prediction 0.430696253294324 Functional Loss - TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73493923 chr17:73493926 stopgain 0.988 0 24 hm5C_associated_SNPs_85276 0 0 1 0 2 TMEM94 chr17:73493943 5'GT 73493943 Upstream 18bp
chr2 27662654 27662654 1 + C T HNSC 27662651 + 27662631 27662671 41 AGGAGTTCATTCAAAAGTGCCTGCAGTCTGAGCCTGCTCGC AGGAGTTCATTCAAAAGTGCCTGTAGTCTGAGCCTGCTCGC < 41bp 0.757240736836586 0.541892836787011 0.09825057 0.103500396 prediction 0.43069580009915 Functional Loss - NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27662651 chr2:27662654 stopgain 1.000 1 24 hm5C_associated_SNPs_85277 0 0 1 0 1 NRBP1 chr2:27662633 3'AG 27662633 Downstream 22bp
chr12 50347952 50347952 1 + G A SKCM 50347949 + 50347929 50347969 41 TGTCCCCAGCTCAGCAACAGCACGACGGCTGGCCAGGCGGT TGTCCCCAGCTCAGCAACAGCACAACGGCTGGCCAGGCGGT < 41bp 0.808045076726832 0.592698007322612 0.253403 0.2056852 prediction 0.43069413880844 Functional Loss - AQP2 ENSG00000167580 CDS Human protein_coding chr12:50347949 chr12:50347952 synonymous SNV . 0 24 hm5C_associated_SNPs_85278 0 0 0 0 1 AQP2 chr12:50347938 3'AG 50347938 Downstream 15bp
chr3 140122503 140122503 1 + G T STAD 140122500 + 140122480 140122520 41 GTGCGTTCAAGATCCATGGCCAGGAGCTGCCCTTTGAGGCT GTGCGTTCAAGATCCATGGCCAGTAGCTGCCCTTTGAGGCT < 41bp 0.715344166060145 0.35932206621188 0.92988366 0.1866697 prediction 0.43068833212029 Functional Loss - CLSTN2 ENSG00000158258 CDS Human protein_coding chr3:140122500 chr3:140122503 stopgain 0.999 1 24 hm5C_associated_SNPs_85281 0 0 0 0 1 CLSTN2 chr3:140122471 3'AG 140122471 Downstream 33bp
chr19 56390204 56390204 1 + C T STAD 56390202 + 56390182 56390222 41 AGCACCTGCTGTAAGGATCTCGCGTCTGTTCTCACCTGCAG AGCACCTGCTGTAAGGATCTCGTGTCTGTTCTCACCTGCAG < 41bp 0.715339841300778 0.445244452407695 0.04894483 0.101111054 prediction 0.430679682601556 Functional Loss - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56390202 chr19:56390204 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_85283 0 0 0 0 1 NLRP4 chr19:56390160 3'AG 56390160 Downstream 45bp
chr19 56390205 56390205 1 + G A UCEC 56390202 + 56390182 56390222 41 AGCACCTGCTGTAAGGATCTCGCGTCTGTTCTCACCTGCAG AGCACCTGCTGTAAGGATCTCGCATCTGTTCTCACCTGCAG < 41bp 0.715339841300778 0.466690262470549 0.04894483 0.089393705 prediction 0.430679682601556 Functional Loss - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56390202 chr19:56390205 synonymous SNV . 0 24 hm5C_associated_SNPs_85284 0 0 0 0 1 NLRP4 chr19:56390160 3'AG 56390160 Downstream 46bp
chr15 67073399 67073399 1 + C T CESC 67073397 + 67073377 67073417 41 GCAGCGTGGCGTACTGGGAGCACCGGACGCGCGTGGGCCGC GCAGCGTGGCGTACTGGGAGCATCGGACGCGCGTGGGCCGC < 41bp 0.77132148789488 0.555985302950163 0.44438133 0.46511975 prediction 0.430672369889434 Functional Loss - SMAD6 ENSG00000137834 CDS Human protein_coding chr15:67073397 chr15:67073399 synonymous SNV . 0 23 hm5C_associated_SNPs_85285 0 0 1 0 1 SMAD6 chr15:67073335 3'AG 67073335 Downstream 65bp
chr2 135630127 135630127 1 + G A rs138304352 135630124 + 135630104 135630144 41 GCCCAGGACAACCCCATGAACCCGAAGAAATACCTTGGTTC GCCCAGGACAACCCCATGAACCCAAAGAAATACCTTGGTTC < 41bp 0.794994838670943 0.579658953387901 0.04664707 0.032274753 prediction 0.430671770566085 Functional Loss - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135630124 chr2:135630127 synonymous SNV . 0 24 hm5C_associated_SNPs_85286 0 0 0 0 2 ACMSD chr2:135630039 3'AG 135630039 Downstream 89bp
chr2 135630127 135630127 1 + G A rs138304352 135630124 + 135630104 135630144 41 GCCCAGGACAACCCCATGAACCCGAAGAAATACCTTGGTTC GCCCAGGACAACCCCATGAACCCAAAGAAATACCTTGGTTC < 41bp 0.794994838670943 0.579658953387901 0.04664707 0.032274753 prediction 0.430671770566085 Functional Loss - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135630124 chr2:135630127 synonymous SNV . 0 24 hm5C_associated_SNPs_85286 0 0 0 0 2 ACMSD chr2:135630211 5'GT 135630211 Upstream 85bp
chr9 72723222 72723222 1 + C T SKCM 72723219 + 72723199 72723239 41 AGGCTGAGGAATGGAGCTGCCTCCGTTTGGTCTACCAGATA AGGCTGAGGAATGGAGCTGCCTCTGTTTGGTCTACCAGATA < 41bp 0.756743805321294 0.541413841472236 0.25463098 0.13984996 prediction 0.430659927698116 Functional Loss - MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72723219 chr9:72723222 nonsynonymous SNV 0.974 4 24 hm5C_associated_SNPs_85290 0 0 0 1 1 MAMDC2 chr9:72723127 3'AG 72723127 Downstream 96bp
chr14 93154369 93154369 1 + G A SKCM 93154366 + 93154346 93154386 41 CAGGCGCTGTGCGCGCAGTGCGCGGAGAAGTTCGCGGTGGA CAGGCGCTGTGCGCGCAGTGCGCAGAGAAGTTCGCGGTGGA < 41bp 0.793772067044343 0.578443130332147 0.7779423 0.34081024 prediction 0.430657873424391 Functional Loss - RIN3 ENSG00000100599 CDS Human protein_coding chr14:93154366 chr14:93154369 synonymous SNV . 0 24 hm5C_associated_SNPs_85291 0 0 0 0 1 RIN3 chr14:93154271 3'AG 93154271 Downstream 99bp
chr15 41145947 41145947 1 + G T LUSC 41145944 + 41145924 41145964 41 CCAACAAGGTGGGTCGCTGCCGGGGCTCTTTCCCACGCTGG CCAACAAGGTGGGTCGCTGCCGGTGCTCTTTCCCACGCTGG < 41bp 0.939788627665797 0.724459704290826 0.94209075 0.42723837 prediction 0.430657846749942 Functional Loss - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41145944 chr15:41145947 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_85292 0 0 0 0 1 SPINT1 chr15:41145909 3'AG 41145909 Downstream 39bp
chr6 80749472 80749472 1 + G A HNSC 80749469 + 80749449 80749489 41 ATTTTGTACTATATGACTTACGGGAAAACACCATTTCAGCA ATTTTGTACTATATGACTTACGGAAAAACACCATTTCAGCA < 41bp 0.729501430717186 0.514174894849869 0.33973023 0.06266877 prediction 0.430653071734633 Functional Loss - TTK ENSG00000112742 CDS Human protein_coding chr6:80749469 chr6:80749472 synonymous SNV . 0 24 hm5C_associated_SNPs_85294 0 0 1 0 1 TTK chr6:80749413 3'AG 80749413 Downstream 60bp
chr20 43547570 43547570 1 + G T LUSC 43547567 + 43547547 43547587 41 CTTTGTGGGTCACTTCAAGTCTCGACGGGAGCGGGAGGCGG CTTTGTGGGTCACTTCAAGTCTCTACGGGAGCGGGAGGCGG < 41bp 0.928162733406519 0.712837530620649 0.9206028 0.92803156 prediction 0.43065040557174 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43547567 chr20:43547570 nonsynonymous SNV 0.959 4 24 hm5C_associated_SNPs_85296 0 0 1 0 1 PABPC1L chr20:43547547 3'AG 43547547 Downstream 24bp
chr1 205031676 205031676 1 + A T HNSC 205031672 + 205031652 205031692 41 AATAAGCACGGTACCATCTACGCCAGCGCCGAGCTAGCCGT AATAAGCACGGTACCATCTACGCCTGCGCCGAGCTAGCCGT < 41bp 0.71532507850067 0.364687997992587 0.3801443 0.21172726 prediction 0.430650157001341 Functional Loss - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205031672 chr1:205031676 nonsynonymous SNV 0.952 3 25 hm5C_associated_SNPs_85297 0 0 0 0 1 CNTN2 chr1:205031697 5'GT 205031697 Upstream 22bp
chr1 205031674 205031674 1 + C T UCS 205031672 + 205031652 205031692 41 AATAAGCACGGTACCATCTACGCCAGCGCCGAGCTAGCCGT AATAAGCACGGTACCATCTACGTCAGCGCCGAGCTAGCCGT < 41bp 0.71532507850067 0.425788796185523 0.3801443 0.37049705 prediction 0.430650157001341 Functional Loss - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205031672 chr1:205031674 nonsynonymous SNV 0.957 3 23 hm5C_associated_SNPs_85298 0 0 0 0 1 CNTN2 chr1:205031697 5'GT 205031697 Upstream 24bp
chr7 120978974 120978974 1 + G A SKCM 120978971 + 120978951 120978991 41 TGTCAGTAGACTGCCGCTGCCACGGAGTTTCCGGCTCCTGT TGTCAGTAGACTGCCGCTGCCACAGAGTTTCCGGCTCCTGT < 41bp 0.762652907683811 0.547328478142921 0.3616042 0.18839267 prediction 0.430648859081781 Functional Loss - WNT16 ENSG00000002745 CDS Human protein_coding chr7:120978971 chr7:120978974 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_85301 0 0 0 0 1 WNT16 chr7:120978935 3'AG 120978935 Downstream 40bp
chr11 47260392 47260392 1 + C T UCEC 47260390 + 47260370 47260410 41 GAGCCAGGAGGAAGCCAGGACACGGAAGTGAGAGACACTAA GAGCCAGGAGGAAGCCAGGACATGGAAGTGAGAGACACTAA < 41bp 0.819700937401492 0.604378141172506 0.39534828 0.26805678 prediction 0.430645592457972 Functional Loss - DDB2 ENSG00000134574 CDS Human protein_coding chr11:47260390 chr11:47260392 nonsynonymous SNV 0.105 2 23 hm5C_associated_SNPs_85303 0 0 1 0 1 DDB2 chr11:47260351 3'AG 47260351 Downstream 42bp
chr18 10485742 10485742 1 + C T SKCM 10485740 + 10485720 10485760 41 CGCTACAGCCGCGGCGTCCTCTCGTCCAGGGTCATGGGAGG CGCTACAGCCGCGGCGTCCTCTTGTCCAGGGTCATGGGAGG < 41bp 0.71532069993863 0.43263208196883 0.22051886 0.10420495 prediction 0.43064139987726 Functional Loss - APCDD1 ENSG00000154856 CDS Human protein_coding chr18:10485740 chr18:10485742 nonsynonymous SNV 0.023 4 23 hm5C_associated_SNPs_85305 0 0 0 0 1 APCDD1 chr18:10485780 5'GT 10485780 Upstream 39bp
chrX 54957221 54957221 1 + C T UCEC 54957219 + 54957199 54957239 41 ACTGGCGAACCCAGCACCAGCACGGGCTTCAGTAGTGGACC ACTGGCGAACCCAGCACCAGCATGGGCTTCAGTAGTGGACC < 41bp 0.715320465853915 0.484550241352 0.27724424 0.31578952 prediction 0.43064093170783 Functional Loss - TRO ENSG00000067445 CDS Human protein_coding chrX:54957219 chrX:54957221 nonsynonymous SNV 0.012 3 23 hm5C_associated_SNPs_85306 0 0 1 0 1 TRO chrX:54957174 3'AG 54957174 Downstream 48bp
chr5 156816385 156816385 1 + C T SKCM 156816382 + 156816362 156816402 41 GAGTTCCACCGGCTGTGGAGCGCCATGCAGTTCGTGTACTG GAGTTCCACCGGCTGTGGAGCGCTATGCAGTTCGTGTACTG < 41bp 0.730581700186897 0.515267862009131 0.25507843 0.28129882 prediction 0.430627676355532 Functional Loss - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816382 chr5:156816385 synonymous SNV . 0 24 hm5C_associated_SNPs_85309 0 0 0 0 1 CYFIP2 chr5:156816435 5'GT 156816435 Upstream 51bp
chr11 59828685 59828685 1 + G A UCEC 59828682 + 59828662 59828702 41 AGCTGGGGTCAGCCTCTGCCCATGGTACCCCAGGCAGTGAG AGCTGGGGTCAGCCTCTGCCCATAGTACCCCAGGCAGTGAG < 41bp 0.802375639403576 0.587062186368468 0.37932992 0.1427575 prediction 0.430626906070216 Functional Loss - MS4A3 ENSG00000149516 CDS Human protein_coding chr11:59828682 chr11:59828685 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_85310 0 0 1 0 1 MS4A3 chr11:59828619 3'AG 59828619 Downstream 67bp
chr2 58358990 58358990 1 + C T OV 58358987 + 58358967 58359007 41 AGATCCTCGGCTACTGCATGCTGCGGTGGTTGTGTGGGAAA AGATCCTCGGCTACTGCATGCTGTGGTGGTTGTGTGGGAAA < 41bp 0.756784255242527 0.541474411670582 0.19841552 0.17786312 prediction 0.430619687143889 Functional Loss - VRK2 ENSG00000028116 CDS Human protein_coding chr2:58358987 chr2:58358990 nonsynonymous SNV 0.941 3 24 hm5C_associated_SNPs_85311 0 0 1 0 2 VRK2 chr2:58358943 3'AG 58358943 Downstream 48bp
chr2 58358990 58358990 1 + C T OV 58358987 + 58358967 58359007 41 AGATCCTCGGCTACTGCATGCTGCGGTGGTTGTGTGGGAAA AGATCCTCGGCTACTGCATGCTGTGGTGGTTGTGTGGGAAA < 41bp 0.756784255242527 0.541474411670582 0.19841552 0.17786312 prediction 0.430619687143889 Functional Loss - VRK2 ENSG00000028116 CDS Human protein_coding chr2:58358987 chr2:58358990 nonsynonymous SNV 0.941 3 24 hm5C_associated_SNPs_85311 0 0 1 0 2 VRK2 chr2:58359063 5'GT 58359063 Upstream 74bp
chr17 18051428 18051428 1 + G A COAD 18051425 + 18051405 18051445 41 CCATGGGCCGGGCCCAACAGCAGGGCTCGGGGGCTGCCCGC CCATGGGCCGGGCCCAACAGCAGAGCTCGGGGGCTGCCCGC < 41bp 0.73851581671222 0.523207709461804 0.93556345 0.88919103 prediction 0.430616214500833 Functional Loss - MYO15A ENSG00000091536 CDS Human protein_coding chr17:18051425 chr17:18051428 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_85312 0 0 0 0 2 MYO15A chr17:18051343 3'AG 18051343 Downstream 86bp
chr17 18051428 18051428 1 + G A COAD 18051425 + 18051405 18051445 41 CCATGGGCCGGGCCCAACAGCAGGGCTCGGGGGCTGCCCGC CCATGGGCCGGGCCCAACAGCAGAGCTCGGGGGCTGCCCGC < 41bp 0.73851581671222 0.523207709461804 0.93556345 0.88919103 prediction 0.430616214500833 Functional Loss - MYO15A ENSG00000091536 CDS Human protein_coding chr17:18051425 chr17:18051428 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_85312 0 0 0 0 2 MYO15A chr17:18051524 5'GT 18051524 Upstream 97bp
chr3 123348452 123348452 1 + G A rs367656778 123348449 + 123348429 123348469 41 GTTTCGTTATCGTTGTCTCCCATGAAGGGGGAAAGGCCACT GTTTCGTTATCGTTGTCTCCCATAAAGGGGGAAAGGCCACT < 41bp 0.715306775652941 0.476298313310636 0.09838435 0.080929965 prediction 0.430613551305882 Functional Loss - MYLK ENSG00000065534 CDS Human antisense chr3:123348449 chr3:123348452 synonymous SNV . 0 24 hm5C_associated_SNPs_85314 0 0 1 0 1 MYLK-AS1 chr3:123348528 5'GT 123348528 Upstream 77bp
chr17 53014509 53014509 1 + G A UCEC 53014506 + 53014486 53014526 41 CTGCCCCATCTCAAGATCTCCTCGACCTAAGTCCCAGTCCC CTGCCCCATCTCAAGATCTCCTCAACCTAAGTCCCAGTCCC < 41bp 0.764976243931925 0.549669763150509 0.4739076 0.12759295 prediction 0.430612961562831 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014506 chr17:53014509 nonsynonymous SNV 0.461 0 24 hm5C_associated_SNPs_85315 0 0 1 2 2 TOM1L1 chr17:53014470 3'AG 53014470 Downstream 40bp
chr17 53014509 53014509 1 + G A UCEC 53014506 + 53014486 53014526 41 CTGCCCCATCTCAAGATCTCCTCGACCTAAGTCCCAGTCCC CTGCCCCATCTCAAGATCTCCTCAACCTAAGTCCCAGTCCC < 41bp 0.764976243931925 0.549669763150509 0.4739076 0.12759295 prediction 0.430612961562831 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014506 chr17:53014509 nonsynonymous SNV 0.461 0 24 hm5C_associated_SNPs_85315 0 0 1 2 2 TOM1L1 chr17:53014587 5'GT 53014587 Upstream 79bp
chr19 54628008 54628008 1 + C T LGG 54628005 + 54627985 54628025 41 CCCCACACCGGCTACATCTACCACAGTGACATCGTGCAGTC CCCCACACCGGCTACATCTACCATAGTGACATCGTGCAGTC < 41bp 0.733609359567187 0.518303072598919 0.2795835 0.1928932 prediction 0.430612573936537 Functional Loss - PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54628005 chr19:54628008 synonymous SNV . 0 24 hm5C_associated_SNPs_85316 0 0 1 0 1 PRPF31 chr19:54628035 5'GT 54628035 Upstream 28bp
chr17 54526477 54526477 1 + G A BLCA 54526474 + 54526454 54526494 41 GACGACAGAGAGCCCAGACACAAGGGACAGAGTGAAGTTTT GACGACAGAGAGCCCAGACACAAAGGACAGAGTGAAGTTTT < 41bp 0.760162557184065 0.544859672651086 0.36296192 0.049461156 prediction 0.430605769065959 Functional Loss - ANKFN1 ENSG00000153930 CDS Human protein_coding chr17:54526474 chr17:54526477 synonymous SNV . 0 24 hm5C_associated_SNPs_85318 0 0 0 0 2 ANKFN1 chr17:54526440 3'AG 54526440 Downstream 38bp
chr17 54526477 54526477 1 + G A BLCA 54526474 + 54526454 54526494 41 GACGACAGAGAGCCCAGACACAAGGGACAGAGTGAAGTTTT GACGACAGAGAGCCCAGACACAAAGGACAGAGTGAAGTTTT < 41bp 0.760162557184065 0.544859672651086 0.36296192 0.049461156 prediction 0.430605769065959 Functional Loss - ANKFN1 ENSG00000153930 CDS Human protein_coding chr17:54526474 chr17:54526477 synonymous SNV . 0 24 hm5C_associated_SNPs_85318 0 0 0 0 2 ANKFN1 chr17:54526547 5'GT 54526547 Upstream 71bp
chr6 35782489 35782489 1 + C T SKCM 35782486 + 35782466 35782506 41 ATTGGCGACGCCCTCATCCTCTCCTTCCTGGCCTTCGTGTT ATTGGCGACGCCCTCATCCTCTCTTTCCTGGCCTTCGTGTT < 41bp 0.723998376095048 0.508695576405869 0.016689867 0.020942241 prediction 0.430605599378359 Functional Loss - LHFPL5 ENSG00000197753 CDS Human protein_coding chr6:35782486 chr6:35782489 synonymous SNV . 0 24 hm5C_associated_SNPs_85319 0 0 0 0 1 LHFPL5 chr6:35782559 5'GT 35782559 Upstream 71bp
chr22 38046233 38046233 1 + G T UCEC 38046229 + 38046209 38046249 41 GCGTCGTCGAGGCGCTGATCCAGAGCGCAGACACCCTCTTC GCGTCGTCGAGGCGCTGATCCAGATCGCAGACACCCTCTTC < 41bp 0.715301805925906 0.496828764898169 0.91589475 0.9086505 prediction 0.430603611851812 Functional Loss - SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38046229 chr22:38046233 nonsynonymous SNV 0.529 1 25 hm5C_associated_SNPs_85320 0 0 1 0 2 SH3BP1 chr22:38046159 3'AG 38046159 Downstream 75bp
chr22 38046233 38046233 1 + G T UCEC 38046229 + 38046209 38046249 41 GCGTCGTCGAGGCGCTGATCCAGAGCGCAGACACCCTCTTC GCGTCGTCGAGGCGCTGATCCAGATCGCAGACACCCTCTTC < 41bp 0.715301805925906 0.496828764898169 0.91589475 0.9086505 prediction 0.430603611851812 Functional Loss - SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38046229 chr22:38046233 nonsynonymous SNV 0.529 1 25 hm5C_associated_SNPs_85320 0 0 1 0 2 SH3BP1 chr22:38046256 5'GT 38046256 Upstream 24bp
chr2 23608621 23608621 1 + G T rs575404017 23608618 + 23608598 23608638 41 CCGCGACCCCGGGCTCTCTGCGCGTCGGGCCGGGGCCGGAG CCGCGACCCCGGGCTCTCTGCGCTTCGGGCCGGGGCCGGAG < 41bp 0.715301131209314 0.411832146418493 0.41882357 0.21519446 prediction 0.430602262418627 Functional Loss - KLHL29 ENSG00000119771 UTR5 Human protein_coding chr2:23608618 chr2:23608621 . . 0 24 hm5C_associated_SNPs_85322 0 0 0 0 1 KLHL29 chr2:23608651 5'GT 23608651 Upstream 31bp
chr6 41309571 41309571 1 + T C LUAD 41309570 + 41309550 41309590 41 CCTCCTGGACTCCCCGCGACCTGGTCTCTTCACAGACCCAG CCTCCTGGACTCCCCGCGACCCGGTCTCTTCACAGACCCAG < 41bp 0.772491797288972 0.557191412070531 0.07427141 0.04400137 prediction 0.430600770436883 Functional Loss - NCR2 ENSG00000096264 CDS Human protein_coding chr6:41309570 chr6:41309571 nonsynonymous SNV 0.243 0 22 hm5C_associated_SNPs_85324 0 0 0 0 2 NCR2 chr6:41309532 3'AG 41309532 Downstream 40bp
chr6 41309571 41309571 1 + T C LUAD 41309570 + 41309550 41309590 41 CCTCCTGGACTCCCCGCGACCTGGTCTCTTCACAGACCCAG CCTCCTGGACTCCCCGCGACCCGGTCTCTTCACAGACCCAG < 41bp 0.772491797288972 0.557191412070531 0.07427141 0.04400137 prediction 0.430600770436883 Functional Loss - NCR2 ENSG00000096264 CDS Human protein_coding chr6:41309570 chr6:41309571 nonsynonymous SNV 0.243 0 22 hm5C_associated_SNPs_85324 0 0 0 0 2 NCR2 chr6:41309667 5'GT 41309667 Upstream 97bp
chr10 106160518 106160518 1 + G A COAD 106160515 + 106160495 106160535 41 GCTTTGCTCTATGAGAAGATCAAGATCCAACAGTCTGTGCT GCTTTGCTCTATGAGAAGATCAAAATCCAACAGTCTGTGCT < 41bp 0.78830872398933 0.573010113816241 0.26625654 0.13965121 prediction 0.430597220346179 Functional Loss - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106160515 chr10:106160518 synonymous SNV . 0 24 hm5C_associated_SNPs_85325 0 0 0 0 1 CFAP58 chr10:106160438 3'AG 106160438 Downstream 81bp
chr9 131016963 131016963 1 + T C ESCA 131016962 + 131016942 131016982 41 TCAGGCAAGTCCATCCCGTCCTGAGAGCCCCAGGCCCCCCT TCAGGCAAGTCCATCCCGTCCCGAGAGCCCCAGGCCCCCCT < 41bp 0.7254414154081 0.510143222155783 0.058468193 0.23325053 prediction 0.430596386504633 Functional Loss - DNM1 ENSG00000106976 CDS Human protein_coding chr9:131016962 chr9:131016963 synonymous SNV . 0 22 hm5C_associated_SNPs_85327 0 0 1 0 1 DNM1 chr9:131016933 3'AG 131016933 Downstream 31bp
chr2 234356807 234356807 1 + G A rs10208953 234356804 + 234356784 234356824 41 ATCCTCACCTCGGACCAGCACTCGGTGGTCATCTCCTCGGC ATCCTCACCTCGGACCAGCACTCAGTGGTCATCTCCTCGGC < 41bp 0.82424832750527 0.608953379349185 0.26428747 0.10835883 prediction 0.430589896312169 Functional Loss - DGKD ENSG00000077044 CDS Human protein_coding chr2:234356804 chr2:234356807 synonymous SNV . 0 24 hm5C_associated_SNPs_85329 0 0 1 0 2 DGKD chr2:234356733 3'AG 234356733 Downstream 75bp
chr2 234356807 234356807 1 + G A rs10208953 234356804 + 234356784 234356824 41 ATCCTCACCTCGGACCAGCACTCGGTGGTCATCTCCTCGGC ATCCTCACCTCGGACCAGCACTCAGTGGTCATCTCCTCGGC < 41bp 0.82424832750527 0.608953379349185 0.26428747 0.10835883 prediction 0.430589896312169 Functional Loss - DGKD ENSG00000077044 CDS Human protein_coding chr2:234356804 chr2:234356807 synonymous SNV . 0 24 hm5C_associated_SNPs_85329 0 0 1 0 2 DGKD chr2:234356827 5'GT 234356827 Upstream 21bp
chr2 242129583 242129583 1 + G A rs61749471 242129580 + 242129560 242129600 41 TACGGGAGCACAGCCCACGCCTCGGAGGTAACAGCACCCAG TACGGGAGCACAGCCCACGCCTCAGAGGTAACAGCACCCAG < 41bp 0.805588276072381 0.590294301954614 0.08521965 0.04349366 prediction 0.430587948235534 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242129580 chr2:242129583 synonymous SNV . 0 24 hm5C_associated_SNPs_85330 0 0 0 0 1 ANO7 chr2:242129586 5'GT 242129586 Upstream 4bp
chr5 43659377 43659377 1 + C T HNSC 43659375 + 43659355 43659395 41 TGTGTGCAGAGGGCTTCCTGCTCAACAACAATCTGCTGACC TGTGTGCAGAGGGCTTCCTGCTTAACAACAATCTGCTGACC < 41bp 0.715290941039402 0.408482777196338 0.2868059 0.19398001 prediction 0.430581882078804 Functional Loss - NNT ENSG00000112992 CDS Human protein_coding chr5:43659375 chr5:43659377 synonymous SNV . 0 23 hm5C_associated_SNPs_85332 0 0 1 0 1 NNT chr5:43659452 5'GT 43659452 Upstream 76bp
chr11 102668818 102668818 1 - G A COAD 102668820 - 102668800 102668840 41 AGAAGACAAAGGCCAGTATGCACAGCTTTCCTCCACTGCTG AGAAGACAAAGGCCAGTATGCATAGCTTTCCTCCACTGCTG < 41bp 0.790080890884797 0.574790235935274 0.037603945 0.086205244 prediction 0.430581309899046 Functional Loss - MMP1 ENSG00000196611 CDS Human protein_coding chr11:102668820 chr11:102668818 synonymous SNV . 0 23 hm5C_associated_SNPs_85333 0 0 0 0 1 MMP1 chr11:102668719 5'GT 102668719 Upstream 100bp
chr11 117162473 117162473 1 - C A UCEC 117162476 - 117162456 117162496 41 ACCACCAACCTTCGTTTGCCCAAGAAAGTGTTTGAAGCTGC ACCACCAACCTTCGTTTGCCCAATAAAGTGTTTGAAGCTGC < 41bp 0.715288198487876 0.321940516639449 0.28715247 0.12567386 prediction 0.430576396975752 Functional Loss - BACE1 ENSG00000186318 CDS Human protein_coding chr11:117162476 chr11:117162473 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_85335 0 0 1 0 1 BACE1 chr11:117162428 5'GT 117162428 Upstream 46bp
chr1 34329876 34329876 1 + G A LUSC 34329873 + 34329853 34329893 41 CTGAATTACAGAAACAAATTCAAGGAGCAGCAGCCAAATAC CTGAATTACAGAAACAAATTCAAAGAGCAGCAGCCAAATAC < 41bp 0.715284473198531 0.480523959375016 0.3956035 0.15328461 prediction 0.430568946397061 Functional Loss - HMGB4 ENSG00000176256 CDS Human protein_coding chr1:34329873 chr1:34329876 synonymous SNV . 0 24 hm5C_associated_SNPs_85338 0 0 0 0 1 HMGB4 chr1:34329864 3'AG 34329864 Downstream 13bp
chr16 70508837 70508837 1 + G A COAD 70508834 + 70508814 70508854 41 GCTGTGGCTGGCGGTGGGGCCTCGGCAGGATGAGATGACTG GCTGTGGCTGGCGGTGGGGCCTCAGCAGGATGAGATGACTG < 41bp 0.799742060024632 0.584457731299034 0.6116332 0.44420886 prediction 0.430568657451195 Functional Loss - FUK ENSG00000157353 CDS Human protein_coding chr16:70508834 chr16:70508837 nonsynonymous SNV 0.989 1 24 hm5C_associated_SNPs_85339 0 0 1 0 1 FUK chr16:70508914 5'GT 70508914 Upstream 78bp
chr12 85674179 85674179 1 + G A PRAD 85674176 + 85674156 85674196 41 CTTTTACAGCAAAGCGTCTGCAGGCAAATGCGTGCAGGCCT CTTTTACAGCAAAGCGTCTGCAGACAAATGCGTGCAGGCCT < 41bp 0.773505878775601 0.558223934093763 0.86655957 0.54506946 prediction 0.430563889363676 Functional Loss - ALX1 ENSG00000180318 CDS Human protein_coding chr12:85674176 chr12:85674179 nonsynonymous SNV 0.750 2 24 hm5C_associated_SNPs_85340 0 0 1 0 1 ALX1 chr12:85674265 5'GT 85674265 Upstream 87bp
chr7 5267774 5267774 1 + C T rs145722805 5267771 + 5267751 5267791 41 CGGTTGTTGGTGGGTGCCGCCGACGGGTACCTGTACATGTA CGGTTGTTGGTGGGTGCCGCCGATGGGTACCTGTACATGTA < 41bp 0.715280679285266 0.495512248270276 0.13208851 0.0942176 prediction 0.430561358570533 Functional Loss - WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5267771 chr7:5267774 synonymous SNV . 0 24 hm5C_associated_SNPs_85341 0 0 1 0 2 WIPI2 chr7:5267735 3'AG 5267735 Downstream 40bp
chr7 5267774 5267774 1 + C T rs145722805 5267771 + 5267751 5267791 41 CGGTTGTTGGTGGGTGCCGCCGACGGGTACCTGTACATGTA CGGTTGTTGGTGGGTGCCGCCGATGGGTACCTGTACATGTA < 41bp 0.715280679285266 0.495512248270276 0.13208851 0.0942176 prediction 0.430561358570533 Functional Loss - WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5267771 chr7:5267774 synonymous SNV . 0 24 hm5C_associated_SNPs_85341 0 0 1 0 2 WIPI2 chr7:5267842 5'GT 5267842 Upstream 69bp
chr18 77211680 77211680 1 + G T UCEC 77211678 + 77211658 77211698 41 CCTCTCCTTCTGATGCAGCCCAGCGCTCAGCTCAGGAGCTG CCTCTCCTTCTGATGCAGCCCATCGCTCAGCTCAGGAGCTG < 41bp 0.715278425675472 0.370977617716712 0.06212333 0.021949202 prediction 0.430556851350945 Functional Loss - NFATC1 ENSG00000131196 CDS Human protein_coding chr18:77211678 chr18:77211680 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_85344 0 0 0 0 1 NFATC1 chr18:77211676 3'AG 77211676 Downstream 5bp
chr10 111988079 111988079 1 + G T UCEC 111988077 + 111988057 111988097 41 AGCAACACCAGCACTGCCAACAGGTAGCAAGCTGGGAACGC AGCAACACCAGCACTGCCAACATGTAGCAAGCTGGGAACGC < 41bp 0.715276651891187 0.351708548704059 0.7373311 0.19111979 prediction 0.430553303782374 Functional Loss - MXI1 ENSG00000119950 CDS Human protein_coding chr10:111988077 chr10:111988079 nonsynonymous SNV 0.982 5 23 hm5C_associated_SNPs_85345 0 0 1 0 1 MXI1 chr10:111988079 5'GT 111988079 Upstream 1bp
chr10 72619180 72619180 1 + G A UCEC 72619177 + 72619157 72619197 41 CCTGCATCCAGATATCTTCCCAGGACTACGCAAGATAGAGG CCTGCATCCAGATATCTTCCCAGAACTACGCAAGATAGAGG < 41bp 0.789723031516929 0.574453069051357 0.7879779 0.39415464 prediction 0.430539924931144 Functional Loss - SGPL1 ENSG00000166224 CDS Human protein_coding chr10:72619177 chr10:72619180 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_85348 0 0 1 0 2 SGPL1 chr10:72619128 3'AG 72619128 Downstream 53bp
chr10 72619180 72619180 1 + G A UCEC 72619177 + 72619157 72619197 41 CCTGCATCCAGATATCTTCCCAGGACTACGCAAGATAGAGG CCTGCATCCAGATATCTTCCCAGAACTACGCAAGATAGAGG < 41bp 0.789723031516929 0.574453069051357 0.7879779 0.39415464 prediction 0.430539924931144 Functional Loss - SGPL1 ENSG00000166224 CDS Human protein_coding chr10:72619177 chr10:72619180 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_85348 0 0 1 0 2 SGPL1 chr10:72619256 5'GT 72619256 Upstream 77bp
chr19 48945880 48945880 1 + T C rs62130268 48945879 + 48945859 48945899 41 CATGTACAGCTGCTGCAGCGCTGAGGCCGCCCCACCGCCCG CATGTACAGCTGCTGCAGCGCCGAGGCCGCCCCACCGCCCG < 41bp 0.726305548189266 0.51103563261749 0.3957107 0.631269 prediction 0.430539831143551 Functional Loss - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48945879 chr19:48945880 synonymous SNV . 0 22 hm5C_associated_SNPs_85349 0 0 0 0 1 GRIN2D chr19:48945857 3'AG 48945857 Downstream 24bp
chr20 43036084 43036084 1 + G A SKCM 43036081 + 43036061 43036101 41 CAGTGCCGCTACTGCAGGCTCAAGAAATGCTTCCGGGCTGG CAGTGCCGCTACTGCAGGCTCAAAAAATGCTTCCGGGCTGG < 41bp 0.815152878267726 0.599883703306443 0.85223603 0.59109163 prediction 0.430538349922566 Functional Loss - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43036081 chr20:43036084 synonymous SNV . 0 24 hm5C_associated_SNPs_85350 0 0 1 0 1 HNF4A chr20:43036021 3'AG 43036021 Downstream 64bp
chr20 31607446 31607446 1 + C T SKCM 31607444 + 31607424 31607464 41 CAAGGTGCGGCTGGGTGCCACACCTGTGGCCATGCTCCACA CAAGGTGCGGCTGGGTGCCACATCTGTGGCCATGCTCCACA < 41bp 0.715260534410627 0.451630478324604 0.13280523 0.20073295 prediction 0.430521068821254 Functional Loss - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31607444 chr20:31607446 nonsynonymous SNV 0.487 3 23 hm5C_associated_SNPs_85354 0 0 1 0 1 BPIFB2 chr20:31607386 3'AG 31607386 Downstream 61bp
chr11 118828008 118828008 1 + G A rs192943196 118828005 + 118827985 118828025 41 TGGTGCTGGCTTCACAGTCACTCGGCTCAGTGCATACCAGG TGGTGCTGGCTTCACAGTCACTCAGCTCAGTGCATACCAGG < 41bp 0.715250225584225 0.467142123960547 0.07465246 0.075133264 prediction 0.430500451168451 Functional Loss - UPK2 ENSG00000110375 CDS Human protein_coding chr11:118828005 chr11:118828008 nonsynonymous SNV 0.983 3 24 hm5C_associated_SNPs_85360 0 0 0 0 2 UPK2 chr11:118827918 3'AG 118827918 Downstream 91bp
chr11 118828008 118828008 1 + G A rs192943196 118828005 + 118827985 118828025 41 TGGTGCTGGCTTCACAGTCACTCGGCTCAGTGCATACCAGG TGGTGCTGGCTTCACAGTCACTCAGCTCAGTGCATACCAGG < 41bp 0.715250225584225 0.467142123960547 0.07465246 0.075133264 prediction 0.430500451168451 Functional Loss - UPK2 ENSG00000110375 CDS Human protein_coding chr11:118828005 chr11:118828008 nonsynonymous SNV 0.983 3 24 hm5C_associated_SNPs_85360 0 0 0 0 2 UPK2 chr11:118828056 5'GT 118828056 Upstream 49bp
chr11 118828007 118828007 1 + C T UCEC 118828005 + 118827985 118828025 41 TGGTGCTGGCTTCACAGTCACTCGGCTCAGTGCATACCAGG TGGTGCTGGCTTCACAGTCACTTGGCTCAGTGCATACCAGG < 41bp 0.715250225584225 0.430505661011262 0.07465246 0.099669725 prediction 0.430500451168451 Functional Loss - UPK2 ENSG00000110375 CDS Human protein_coding chr11:118828005 chr11:118828007 nonsynonymous SNV 0.957 4 23 hm5C_associated_SNPs_85361 0 0 0 0 2 UPK2 chr11:118827918 3'AG 118827918 Downstream 90bp
chr11 118828007 118828007 1 + C T UCEC 118828005 + 118827985 118828025 41 TGGTGCTGGCTTCACAGTCACTCGGCTCAGTGCATACCAGG TGGTGCTGGCTTCACAGTCACTTGGCTCAGTGCATACCAGG < 41bp 0.715250225584225 0.430505661011262 0.07465246 0.099669725 prediction 0.430500451168451 Functional Loss - UPK2 ENSG00000110375 CDS Human protein_coding chr11:118828005 chr11:118828007 nonsynonymous SNV 0.957 4 23 hm5C_associated_SNPs_85361 0 0 0 0 2 UPK2 chr11:118828056 5'GT 118828056 Upstream 50bp
chr1 207010076 207010076 1 + C T ESCA 207010074 + 207010054 207010094 41 TATTGTGCTCAGTAGACAACCACGGTCTCAGGAGATGTCTG TATTGTGCTCAGTAGACAACCATGGTCTCAGGAGATGTCTG < 41bp 0.715247317901126 0.44924981218686 0.07471964 0.17286164 prediction 0.430494635802252 Functional Loss - IL19 ENSG00000142224 CDS Human protein_coding chr1:207010074 chr1:207010076 synonymous SNV . 0 23 hm5C_associated_SNPs_85363 0 0 0 0 1 IL19 chr1:207010151 5'GT 207010151 Upstream 76bp
chr2 27665739 27665739 1 + G A LUSC 27665736 + 27665716 27665756 41 CCGTGGGACTTGTGGCCCTCCTGGCGTCCAGGAACCTTCTT CCGTGGGACTTGTGGCCCTCCTGACGTCCAGGAACCTTCTT < 41bp 0.715247202525435 0.466757565297895 0.15534884 0.119588375 prediction 0.43049440505087 Functional Loss - KRTCAP3 ENSG00000157992 CDS Human protein_coding chr2:27665736 chr2:27665739 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_85364 0 0 1 0 2 KRTCAP3 chr2:27665709 3'AG 27665709 Downstream 31bp
chr2 27665739 27665739 1 + G A LUSC 27665736 + 27665716 27665756 41 CCGTGGGACTTGTGGCCCTCCTGGCGTCCAGGAACCTTCTT CCGTGGGACTTGTGGCCCTCCTGACGTCCAGGAACCTTCTT < 41bp 0.715247202525435 0.466757565297895 0.15534884 0.119588375 prediction 0.43049440505087 Functional Loss - KRTCAP3 ENSG00000157992 CDS Human protein_coding chr2:27665736 chr2:27665739 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_85364 0 0 1 0 2 KRTCAP3 chr2:27665768 5'GT 27665768 Upstream 30bp
chr1 162326831 162326831 1 + G A COAD 162326828 + 162326808 162326848 41 CTTCCTCGAAGCCTCCAGGCCTGGGCACAGAGACACCGCTG CTTCCTCGAAGCCTCCAGGCCTGAGCACAGAGACACCGCTG < 41bp 0.71524648144316 0.46905321035868 0.0971863 0.013272494 prediction 0.430492962886321 Functional Loss - NOS1AP ENSG00000198929 CDS Human protein_coding chr1:162326828 chr1:162326831 nonsynonymous SNV 0.021 0 24 hm5C_associated_SNPs_85366 0 0 0 0 2 NOS1AP chr1:162326750 3'AG 162326750 Downstream 82bp
chr1 162326831 162326831 1 + G A COAD 162326828 + 162326808 162326848 41 CTTCCTCGAAGCCTCCAGGCCTGGGCACAGAGACACCGCTG CTTCCTCGAAGCCTCCAGGCCTGAGCACAGAGACACCGCTG < 41bp 0.71524648144316 0.46905321035868 0.0971863 0.013272494 prediction 0.430492962886321 Functional Loss - NOS1AP ENSG00000198929 CDS Human protein_coding chr1:162326828 chr1:162326831 nonsynonymous SNV 0.021 0 24 hm5C_associated_SNPs_85366 0 0 0 0 2 NOS1AP chr1:162326926 5'GT 162326926 Upstream 96bp
chrX 122616715 122616715 1 + G T LUAD 122616713 + 122616693 122616733 41 TCTATATACTTGTCGGAGGTCTGGGGCTGGCCATGATGGTG TCTATATACTTGTCGGAGGTCTTGGGCTGGCCATGATGGTG < 41bp 0.71524258342319 0.374719108196632 0.65061027 0.3788697 prediction 0.43048516684638 Functional Loss - GRIA3 ENSG00000125675 CDS Human protein_coding chrX:122616713 chrX:122616715 synonymous SNV . 0 23 hm5C_associated_SNPs_85369 0 0 0 0 1 GRIA3 chrX:122616650 3'AG 122616650 Downstream 66bp
chrX 122616714 122616714 1 + T C LUAD 122616713 + 122616693 122616733 41 TCTATATACTTGTCGGAGGTCTGGGGCTGGCCATGATGGTG TCTATATACTTGTCGGAGGTCCGGGGCTGGCCATGATGGTG < 41bp 0.71524258342319 0.485951199248335 0.65061027 0.8645474 prediction 0.43048516684638 Functional Loss - GRIA3 ENSG00000125675 CDS Human protein_coding chrX:122616713 chrX:122616714 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_85370 0 0 0 0 1 GRIA3 chrX:122616650 3'AG 122616650 Downstream 65bp
chr8 51314808 51314808 1 + G T COAD 51314806 + 51314786 51314826 41 GTTTGCTGCAGGATGGTAACCAGGAGCCTTTCAAAGTGCGG GTTTGCTGCAGGATGGTAACCATGAGCCTTTCAAAGTGCGG < 41bp 0.71524242169905 0.440798094334654 0.890367 0.3508762 prediction 0.4304848433981 Functional Loss - SNTG1 ENSG00000147481 CDS Human protein_coding chr8:51314806 chr8:51314808 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_85371 0 0 0 1 2 SNTG1 chr8:51314770 3'AG 51314770 Downstream 39bp
chr8 51314808 51314808 1 + G T COAD 51314806 + 51314786 51314826 41 GTTTGCTGCAGGATGGTAACCAGGAGCCTTTCAAAGTGCGG GTTTGCTGCAGGATGGTAACCATGAGCCTTTCAAAGTGCGG < 41bp 0.71524242169905 0.440798094334654 0.890367 0.3508762 prediction 0.4304848433981 Functional Loss - SNTG1 ENSG00000147481 CDS Human protein_coding chr8:51314806 chr8:51314808 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_85371 0 0 0 1 2 SNTG1 chr8:51314904 5'GT 51314904 Upstream 97bp
chr19 41707228 41707228 1 + C T SKCM 41707225 + 41707205 41707245 41 GCTGGGACGATGACGGTCAGCACCACGGTCGGCTATACCCT GCTGGGACGATGACGGTCAGCACTACGGTCGGCTATACCCT < 41bp 0.748052352127984 0.532810830425442 0.17375246 0.20994037 prediction 0.430483043405085 Functional Loss - CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41707225 chr19:41707228 nonsynonymous SNV 0.087 0 24 hm5C_associated_SNPs_85374 0 0 0 0 2 CYP2S1 chr19:41707136 3'AG 41707136 Downstream 93bp
chr19 41707228 41707228 1 + C T SKCM 41707225 + 41707205 41707245 41 GCTGGGACGATGACGGTCAGCACCACGGTCGGCTATACCCT GCTGGGACGATGACGGTCAGCACTACGGTCGGCTATACCCT < 41bp 0.748052352127984 0.532810830425442 0.17375246 0.20994037 prediction 0.430483043405085 Functional Loss - CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41707225 chr19:41707228 nonsynonymous SNV 0.087 0 24 hm5C_associated_SNPs_85374 0 0 0 0 2 CYP2S1 chr19:41707277 5'GT 41707277 Upstream 50bp
chr11 67378584 67378584 1 + C T rs150859374 67378581 + 67378561 67378601 41 GGCAGAGAACGCAACTCAGGCACCAAACTATTCAACATCTC GGCAGAGAACGCAACTCAGGCACTAAACTATTCAACATCTC < 41bp 0.738962121457166 0.523722722139255 0.36666924 0.18381631 prediction 0.430478798635824 Functional Loss - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67378581 chr11:67378584 synonymous SNV . 0 24 hm5C_associated_SNPs_85375 2 0 1 0 1 NDUFV1 chr11:67378678 5'GT 67378678 Upstream 95bp
chr11 74914385 74914385 1 + C T UCEC 74914383 + 74914363 74914403 41 AGCCCCGTGATCCACGGCAGCGCCATCGACACCACCTGTGT AGCCCCGTGATCCACGGCAGCGTCATCGACACCACCTGTGT < 41bp 0.715236919704416 0.435568431914133 0.21290734 0.13302279 prediction 0.430473839408831 Functional Loss - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74914383 chr11:74914385 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_85377 0 0 1 0 2 SLCO2B1 chr11:74914352 3'AG 74914352 Downstream 34bp
chr11 74914385 74914385 1 + C T UCEC 74914383 + 74914363 74914403 41 AGCCCCGTGATCCACGGCAGCGCCATCGACACCACCTGTGT AGCCCCGTGATCCACGGCAGCGTCATCGACACCACCTGTGT < 41bp 0.715236919704416 0.435568431914133 0.21290734 0.13302279 prediction 0.430473839408831 Functional Loss - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74914383 chr11:74914385 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_85377 0 0 1 0 2 SLCO2B1 chr11:74914472 5'GT 74914472 Upstream 88bp
chr3 28562532 28562532 1 + G T UCEC 28562530 + 28562510 28562550 41 AAGAGCTGGAGCAAATGCTGCAGCAAGCACTGCAACCCACA AAGAGCTGGAGCAAATGCTGCATCAAGCACTGCAACCCACA < 41bp 0.715236367009256 0.367908062186743 0.34764344 0.14883846 prediction 0.430472734018511 Functional Loss - ZCWPW2 ENSG00000206559 CDS Human protein_coding chr3:28562530 chr3:28562532 nonsynonymous SNV 0.816 1 23 hm5C_associated_SNPs_85378 0 0 0 0 2 ZCWPW2 chr3:28562483 3'AG 28562483 Downstream 50bp
chr3 28562532 28562532 1 + G T UCEC 28562530 + 28562510 28562550 41 AAGAGCTGGAGCAAATGCTGCAGCAAGCACTGCAACCCACA AAGAGCTGGAGCAAATGCTGCATCAAGCACTGCAACCCACA < 41bp 0.715236367009256 0.367908062186743 0.34764344 0.14883846 prediction 0.430472734018511 Functional Loss - ZCWPW2 ENSG00000206559 CDS Human protein_coding chr3:28562530 chr3:28562532 nonsynonymous SNV 0.816 1 23 hm5C_associated_SNPs_85378 0 0 0 0 2 ZCWPW2 chr3:28562607 5'GT 28562607 Upstream 76bp
chr17 16330853 16330853 1 + G T LUAD 16330850 + 16330830 16330870 41 TGCTAGGGGGGATCTACCTCCTCGTGGGCCAGGTGAGTGCC TGCTAGGGGGGATCTACCTCCTCTTGGGCCAGGTGAGTGCC < 41bp 0.715234359313797 0.313922062135724 0.2461757 0.048956484 prediction 0.430468718627594 Functional Loss - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16330850 chr17:16330853 nonsynonymous SNV 0.008 1 24 hm5C_associated_SNPs_85380 0 0 0 0 3 TRPV2 chr17:16330763 3'AG 16330763 Downstream 91bp
chr17 16330853 16330853 1 + G T LUAD 16330850 + 16330830 16330870 41 TGCTAGGGGGGATCTACCTCCTCGTGGGCCAGGTGAGTGCC TGCTAGGGGGGATCTACCTCCTCTTGGGCCAGGTGAGTGCC < 41bp 0.715234359313797 0.313922062135724 0.2461757 0.048956484 prediction 0.430468718627594 Functional Loss - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16330850 chr17:16330853 nonsynonymous SNV 0.008 1 24 hm5C_associated_SNPs_85380 0 0 0 0 3 TRPV2 chr17:16330766 3'AG 16330766 Downstream 88bp
chr17 16330853 16330853 1 + G T LUAD 16330850 + 16330830 16330870 41 TGCTAGGGGGGATCTACCTCCTCGTGGGCCAGGTGAGTGCC TGCTAGGGGGGATCTACCTCCTCTTGGGCCAGGTGAGTGCC < 41bp 0.715234359313797 0.313922062135724 0.2461757 0.048956484 prediction 0.430468718627594 Functional Loss - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16330850 chr17:16330853 nonsynonymous SNV 0.008 1 24 hm5C_associated_SNPs_85380 0 0 0 0 3 TRPV2 chr17:16330861 5'GT 16330861 Upstream 9bp
chr17 79503906 79503906 1 + G T LUSC 79503903 + 79503883 79503923 41 CGCCGTCCCGTCCCCCAGGCCGCGACGGAGGGTTCTGGTAC CGCCGTCCCGTCCCCCAGGCCGCTACGGAGGGTTCTGGTAC < 41bp 0.926838721429387 0.711604790303294 0.3467572 0.17797351 prediction 0.430467862252185 Functional Loss - FSCN2 ENSG00000186765 CDS Human protein_coding chr17:79503903 chr17:79503906 nonsynonymous SNV 0.404 1 24 hm5C_associated_SNPs_85381 0 0 0 0 1 FSCN2 chr17:79503901 3'AG 79503901 Downstream 6bp
chr17 72745227 72745227 1 + C T rs201874131 72745225 + 72745205 72745245 41 CAGGTGGTGAGCCGCATCCGCGCCGCACTCAACGCCGTGCG CAGGTGGTGAGCCGCATCCGCGTCGCACTCAACGCCGTGCG < 41bp 0.715232243581635 0.478123882775224 0.285349 0.36226934 prediction 0.43046448716327 Functional Loss - SLC9A3R1 ENSG00000109062 CDS Human protein_coding chr17:72745225 chr17:72745227 nonsynonymous SNV 0.801 2 23 hm5C_associated_SNPs_85383 0 0 0 0 1 SLC9A3R1 chr17:72745193 3'AG 72745193 Downstream 35bp
chr20 61297866 61297866 1 + G A CESC 61297863 + 61297843 61297883 41 TTGTCAGCCTGCTGGGCATCCTCGTCTTCTCACTGCACTGC TTGTCAGCCTGCTGGGCATCCTCATCTTCTCACTGCACTGC < 41bp 0.715231530231805 0.458071183395777 0.040919483 0.13193005 prediction 0.43046306046361 Functional Loss - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61297863 chr20:61297866 nonsynonymous SNV 0.560 0 24 hm5C_associated_SNPs_85384 0 0 0 0 1 SLCO4A1 chr20:61297927 5'GT 61297927 Upstream 62bp
chr19 36256066 36256066 1 + C T SKCM 36256064 + 36256044 36256084 41 GACTCCAGCAAGGGCCTTGGCCCCAGGGCACCCGGTAAGGG GACTCCAGCAAGGGCCTTGGCCTCAGGGCACCCGGTAAGGG < 41bp 0.71523083769165 0.435802490112329 0.32683814 0.12769431 prediction 0.4304616753833 Functional Loss - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36256064 chr19:36256066 nonsynonymous SNV 0.063 0 23 hm5C_associated_SNPs_85385 0 0 1 0 1 PROSER3 chr19:36256077 5'GT 36256077 Upstream 12bp
chr19 36256067 36256067 1 + C T SKCM 36256064 + 36256044 36256084 41 GACTCCAGCAAGGGCCTTGGCCCCAGGGCACCCGGTAAGGG GACTCCAGCAAGGGCCTTGGCCCTAGGGCACCCGGTAAGGG < 41bp 0.71523083769165 0.493253837652222 0.32683814 0.18030769 prediction 0.4304616753833 Functional Loss - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36256064 chr19:36256067 synonymous SNV . 0 24 hm5C_associated_SNPs_85386 0 0 1 0 1 PROSER3 chr19:36256077 5'GT 36256077 Upstream 11bp
chr11 124749841 124749841 1 + G A SKCM 124749838 + 124749818 124749858 41 CAGCCCAGCGGGTGCTCCACCCAGATGGTAAGCAGGGCCAG CAGCCCAGCGGGTGCTCCACCCAAATGGTAAGCAGGGCCAG < 41bp 0.715230091734286 0.465092811994683 0.7288693 0.2269187 prediction 0.430460183468572 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124749838 chr11:124749841 nonsynonymous SNV 0.804 2 24 hm5C_associated_SNPs_85387 0 0 0 0 1 ROBO3 chr11:124749844 5'GT 124749844 Upstream 4bp
chr7 98955969 98955969 1 + G A UCEC 98955966 + 98955946 98955986 41 CATGTTCTTGTGTTCAGGGTCTCGACTCTGAAGACAGAGTT CATGTTCTTGTGTTCAGGGTCTCAACTCTGAAGACAGAGTT < 41bp 0.777895987620723 0.562669788808328 0.07087004 0.024064839 prediction 0.430452397624789 Functional Loss - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98955966 chr7:98955969 synonymous SNV . 0 24 hm5C_associated_SNPs_85388 0 0 1 0 1 ARPC1A chr7:98956038 5'GT 98956038 Upstream 70bp
chr16 57597125 57597125 1 + C T SKCM 57597123 + 57597103 57597143 41 AGCTGTGACTTCTCTGGCCTCTCGCTGACCAGTGCCACTCT AGCTGTGACTTCTCTGGCCTCTTGCTGACCAGTGCCACTCT < 41bp 0.715222522429844 0.436546489666549 0.28395027 0.21356949 prediction 0.430445044859687 Functional Loss - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57597123 chr16:57597125 nonsynonymous SNV 0.004 1 23 hm5C_associated_SNPs_85393 0 0 0 0 1 ADGRG5 chr16:57597159 5'GT 57597159 Upstream 35bp
chrX 48386665 48386665 1 + C T STAD 48386663 + 48386643 48386683 41 TCTACTTCCTGACAGAGCACCGCGACGGATTCCAGCACGGA TCTACTTCCTGACAGAGCACCGTGACGGATTCCAGCACGGA < 41bp 0.832173320475503 0.616951302128053 0.7953149 0.6976577 prediction 0.4304440366949 Functional Loss - EBP ENSG00000147155 CDS Human protein_coding chrX:48386663 chrX:48386665 synonymous SNV . 0 23 hm5C_associated_SNPs_85394 0 0 1 0 1 EBP chrX:48386622 3'AG 48386622 Downstream 44bp
chr9 136516843 136516843 1 + G A SKCM 136516840 + 136516820 136516860 41 AGGTGGTCACAGTGCTGGTCCGGGACGGCCGGGAGTGGGAG AGGTGGTCACAGTGCTGGTCCGGAACGGCCGGGAGTGGGAG < 41bp 0.821577315874475 0.60635688934108 0.6625935 0.35721758 prediction 0.43044085306679 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136516840 chr9:136516843 nonsynonymous SNV 0.082 1 24 hm5C_associated_SNPs_85395 0 0 0 0 2 DBH chr9:136516756 3'AG 136516756 Downstream 88bp
chr9 136516843 136516843 1 + G A SKCM 136516840 + 136516820 136516860 41 AGGTGGTCACAGTGCTGGTCCGGGACGGCCGGGAGTGGGAG AGGTGGTCACAGTGCTGGTCCGGAACGGCCGGGAGTGGGAG < 41bp 0.821577315874475 0.60635688934108 0.6625935 0.35721758 prediction 0.43044085306679 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136516840 chr9:136516843 nonsynonymous SNV 0.082 1 24 hm5C_associated_SNPs_85395 0 0 0 0 2 DBH chr9:136516899 5'GT 136516899 Upstream 57bp
chr6 53660187 53660187 1 + G C BLCA 53660186 + 53660166 53660206 41 CTGGAGGAGCTGCTGCTGGACGCCAACCAGCTCCGCGAGCT CTGGAGGAGCTGCTGCTGGACCCCAACCAGCTCCGCGAGCT < 41bp 0.875853139565099 0.660633423229063 0.098079294 0.0716877 prediction 0.430439432672072 Functional Loss - LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53660186 chr6:53660187 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_85397 0 0 0 0 1 LRRC1 chr6:53660213 5'GT 53660213 Upstream 27bp
chr1 26885393 26885393 1 + C T COAD 26885391 + 26885371 26885411 41 GATGGAAGACGACGGCAAGCCTCGTGCCCCGCAGGCACCCC GATGGAAGACGACGGCAAGCCTTGTGCCCCGCAGGCACCCC < 41bp 0.833665032171389 0.618450170446859 0.13345301 0.10540348 prediction 0.43042972344906 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26885391 chr1:26885393 nonsynonymous SNV 0.736 0 23 hm5C_associated_SNPs_85401 0 0 1 0 2 RPS6KA1 chr1:26885298 3'AG 26885298 Downstream 96bp
chr1 26885393 26885393 1 + C T COAD 26885391 + 26885371 26885411 41 GATGGAAGACGACGGCAAGCCTCGTGCCCCGCAGGCACCCC GATGGAAGACGACGGCAAGCCTTGTGCCCCGCAGGCACCCC < 41bp 0.833665032171389 0.618450170446859 0.13345301 0.10540348 prediction 0.43042972344906 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26885391 chr1:26885393 nonsynonymous SNV 0.736 0 23 hm5C_associated_SNPs_85401 0 0 1 0 2 RPS6KA1 chr1:26885428 5'GT 26885428 Upstream 36bp
chr6 44114612 44114612 1 + G A OV 44114609 + 44114589 44114629 41 CCTACCCCAACTGCACAGTTCTCGAAGCCCGCCCGTGTTAC CCTACCCCAACTGCACAGTTCTCAAAGCCCGCCCGTGTTAC < 41bp 0.81241601459487 0.597201929249436 0.94347405 0.6235577 prediction 0.430428170690866 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44114609 chr6:44114612 nonsynonymous SNV 0.847 2 24 hm5C_associated_SNPs_85402 0 0 1 2 2 TMEM63B chr6:44114584 3'AG 44114584 Downstream 29bp
chr6 44114612 44114612 1 + G A OV 44114609 + 44114589 44114629 41 CCTACCCCAACTGCACAGTTCTCGAAGCCCGCCCGTGTTAC CCTACCCCAACTGCACAGTTCTCAAAGCCCGCCCGTGTTAC < 41bp 0.81241601459487 0.597201929249436 0.94347405 0.6235577 prediction 0.430428170690866 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44114609 chr6:44114612 nonsynonymous SNV 0.847 2 24 hm5C_associated_SNPs_85402 0 0 1 2 2 TMEM63B chr6:44114664 5'GT 44114664 Upstream 53bp
chr12 108010928 108010928 1 + G A STAD 108010925 + 108010905 108010945 41 GAGCATGGCGAGGAGAACTACTCGGAAACACCCCTCCAGCT GAGCATGGCGAGGAGAACTACTCAGAAACACCCCTCCAGCT < 41bp 0.715210510861863 0.465705679001084 0.23430836 0.13930455 prediction 0.430421021723726 Functional Loss - BTBD11 ENSG00000151136 CDS Human protein_coding chr12:108010925 chr12:108010928 synonymous SNV . 0 24 hm5C_associated_SNPs_85403 0 0 0 0 2 BTBD11 chr12:108010866 3'AG 108010866 Downstream 63bp
chr12 108010928 108010928 1 + G A STAD 108010925 + 108010905 108010945 41 GAGCATGGCGAGGAGAACTACTCGGAAACACCCCTCCAGCT GAGCATGGCGAGGAGAACTACTCAGAAACACCCCTCCAGCT < 41bp 0.715210510861863 0.465705679001084 0.23430836 0.13930455 prediction 0.430421021723726 Functional Loss - BTBD11 ENSG00000151136 CDS Human protein_coding chr12:108010925 chr12:108010928 synonymous SNV . 0 24 hm5C_associated_SNPs_85403 0 0 0 0 2 BTBD11 chr12:108010959 5'GT 108010959 Upstream 32bp
chr3 101576283 101576283 1 + G A UCEC 101576280 + 101576260 101576300 41 AACAGCCAGTGCATTTGGTTCCCGATGGCCCTGTGGGAGAA AACAGCCAGTGCATTTGGTTCCCAATGGCCCTGTGGGAGAA < 41bp 0.790623068791338 0.575416648636618 0.24194449 0.1113646 prediction 0.43041284030944 Functional Loss - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101576280 chr3:101576283 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_85407 0 0 1 0 1 NFKBIZ chr3:101576303 5'GT 101576303 Upstream 21bp
chr2 113343638 113343638 1 + G A OV 113343635 + 113343615 113343655 41 GTGGCGGCCAAGCCGGAATCCTGGCAGCGGGACTGTCACTA GTGGCGGCCAAGCCGGAATCCTGACAGCGGGACTGTCACTA < 41bp 0.808615911086314 0.593415627413906 0.680976 0.2996102 prediction 0.430400567344816 Functional Loss - CHCHD5 ENSG00000125611 CDS Human protein_coding chr2:113343635 chr2:113343638 stopgain 0.990 1 24 hm5C_associated_SNPs_85410 0 0 1 0 2 CHCHD5 chr2:113343551 3'AG 113343551 Downstream 88bp
chr2 113343638 113343638 1 + G A OV 113343635 + 113343615 113343655 41 GTGGCGGCCAAGCCGGAATCCTGGCAGCGGGACTGTCACTA GTGGCGGCCAAGCCGGAATCCTGACAGCGGGACTGTCACTA < 41bp 0.808615911086314 0.593415627413906 0.680976 0.2996102 prediction 0.430400567344816 Functional Loss - CHCHD5 ENSG00000125611 CDS Human protein_coding chr2:113343635 chr2:113343638 stopgain 0.990 1 24 hm5C_associated_SNPs_85410 0 0 1 0 2 CHCHD5 chr2:113343691 5'GT 113343691 Upstream 54bp
chr12 56477655 56477655 1 + C T UCS 56477653 + 56477633 56477673 41 GGGAACCTTGAGATTGTGCTCACGGGACACAATGCCGACCT GGGAACCTTGAGATTGTGCTCATGGGACACAATGCCGACCT < 41bp 0.832082898784268 0.61688722343843 0.7509126 0.7989086 prediction 0.430391350691676 Functional Loss - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56477653 chr12:56477655 nonsynonymous SNV 0.961 1 23 hm5C_associated_SNPs_85413 0 0 1 0 1 ERBB3 chr12:56477686 5'GT 56477686 Upstream 32bp
chr19 9491836 9491836 1 + A C ESCA 9491832 + 9491812 9491852 41 TTGTCCCTTCAGAACTGTGTCAGAACTCACTCTGGAGAGAT TTGTCCCTTCAGAACTGTGTCAGACCTCACTCTGGAGAGAT < 41bp 0.715194261877495 0.318920084764552 0.26230276 0.3326466 prediction 0.430388523754991 Functional Loss - ZNF177;ZNF559-ZNF177 ENSG00000188629;ENSG00000270011 CDS Human other chr19:9491832 chr19:9491836 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_85416 0 0 1 0 1 ZNF177;ZNF559-ZNF177 chr19:9491824 3'AG 9491824 Downstream 13bp
chr4 74702730 74702730 1 + C T UCEC 74702728 + 74702708 74702748 41 AGCTGCGTTGCACTTGTTTACGCGTTACGCTGAGAGTAAAC AGCTGCGTTGCACTTGTTTACGTGTTACGCTGAGAGTAAAC < 41bp 0.835587111589011 0.620395569525039 0.2835012 0.34410942 prediction 0.430383084127945 Functional Loss - CXCL6 ENSG00000124875 CDS Human protein_coding chr4:74702728 chr4:74702730 synonymous SNV . 0 23 hm5C_associated_SNPs_85421 0 0 0 0 2 CXCL6 chr4:74702681 3'AG 74702681 Downstream 50bp
chr4 74702730 74702730 1 + C T UCEC 74702728 + 74702708 74702748 41 AGCTGCGTTGCACTTGTTTACGCGTTACGCTGAGAGTAAAC AGCTGCGTTGCACTTGTTTACGTGTTACGCTGAGAGTAAAC < 41bp 0.835587111589011 0.620395569525039 0.2835012 0.34410942 prediction 0.430383084127945 Functional Loss - CXCL6 ENSG00000124875 CDS Human protein_coding chr4:74702728 chr4:74702730 synonymous SNV . 0 23 hm5C_associated_SNPs_85421 0 0 0 0 2 CXCL6 chr4:74702813 5'GT 74702813 Upstream 84bp
chr5 180431759 180431759 1 + G A UCEC 180431756 + 180431736 180431776 41 AATTGAGAGACGCCCGGAAACACGCAGGTACCAACGCCTGA AATTGAGAGACGCCCGGAAACACACAGGTACCAACGCCTGA < 41bp 0.783600102324886 0.568408777230611 0.09180802 0.12846544 prediction 0.43038265018855 Functional Loss - BTNL3 ENSG00000168903 CDS Human protein_coding chr5:180431756 chr5:180431759 nonsynonymous SNV 0.011 3 24 hm5C_associated_SNPs_85422 0 0 0 0 2 BTNL3 chr5:180431736 3'AG 180431736 Downstream 24bp
chr5 180431759 180431759 1 + G A UCEC 180431756 + 180431736 180431776 41 AATTGAGAGACGCCCGGAAACACGCAGGTACCAACGCCTGA AATTGAGAGACGCCCGGAAACACACAGGTACCAACGCCTGA < 41bp 0.783600102324886 0.568408777230611 0.09180802 0.12846544 prediction 0.43038265018855 Functional Loss - BTNL3 ENSG00000168903 CDS Human protein_coding chr5:180431756 chr5:180431759 nonsynonymous SNV 0.011 3 24 hm5C_associated_SNPs_85422 0 0 0 0 2 BTNL3 chr5:180431762 5'GT 180431762 Upstream 4bp
chr2 207459597 207459597 1 + G A SKCM 207459594 + 207459574 207459614 41 TAAATATGAGCAGCTGTCCACTCGATTCCAAGGGTAAAGTC TAAATATGAGCAGCTGTCCACTCAATTCCAAGGGTAAAGTC < 41bp 0.774383328827715 0.559192532431317 0.82926095 0.15669984 prediction 0.430381592792797 Functional Loss - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207459594 chr2:207459597 nonsynonymous SNV 0.988 1 24 hm5C_associated_SNPs_85423 0 0 1 1 1 ADAM23 chr2:207459629 5'GT 207459629 Upstream 33bp
chr5 112203166 112203166 1 + G T UCEC 112203164 + 112203144 112203184 41 AAAAACAAGGACACAAAAAACAGGAGGTGCTGACCAAAGTC AAAAACAAGGACACAAAAAACATGAGGTGCTGACCAAAGTC < 41bp 0.87815938021993 0.662975019160656 0.7431823 0.21754292 prediction 0.430368722118548 Functional Loss - SRP19 ENSG00000153037 CDS Human protein_coding chr5:112203164 chr5:112203166 stopgain 1.000 1 23 hm5C_associated_SNPs_85424 0 0 1 1 2 SRP19 chr5:112203069 3'AG 112203069 Downstream 98bp
chr5 112203166 112203166 1 + G T UCEC 112203164 + 112203144 112203184 41 AAAAACAAGGACACAAAAAACAGGAGGTGCTGACCAAAGTC AAAAACAAGGACACAAAAAACATGAGGTGCTGACCAAAGTC < 41bp 0.87815938021993 0.662975019160656 0.7431823 0.21754292 prediction 0.430368722118548 Functional Loss - SRP19 ENSG00000153037 CDS Human protein_coding chr5:112203164 chr5:112203166 stopgain 1.000 1 23 hm5C_associated_SNPs_85424 0 0 1 1 2 SRP19 chr5:112203101 3'AG 112203101 Downstream 66bp
chr11 60636706 60636706 1 + G A rs115721019 60636703 + 60636683 60636723 41 CCGCAGGAGCCTGCAGTCTTCTCGGCCGATTACAGAGGCTG CCGCAGGAGCCTGCAGTCTTCTCAGCCGATTACAGAGGCTG < 41bp 0.799215374301578 0.584031378379569 0.34629136 0.18971959 prediction 0.430367991844018 Functional Loss - ZP1 ENSG00000149506 CDS Human protein_coding chr11:60636703 chr11:60636706 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_85425 0 0 0 0 2 ZP1 chr11:60636618 3'AG 60636618 Downstream 89bp
chr11 60636706 60636706 1 + G A rs115721019 60636703 + 60636683 60636723 41 CCGCAGGAGCCTGCAGTCTTCTCGGCCGATTACAGAGGCTG CCGCAGGAGCCTGCAGTCTTCTCAGCCGATTACAGAGGCTG < 41bp 0.799215374301578 0.584031378379569 0.34629136 0.18971959 prediction 0.430367991844018 Functional Loss - ZP1 ENSG00000149506 CDS Human protein_coding chr11:60636703 chr11:60636706 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_85425 0 0 0 0 2 ZP1 chr11:60636739 5'GT 60636739 Upstream 34bp
chr19 34838881 34838881 1 + G A rs146017138 34838878 + 34838858 34838898 41 CGGTCGCCGGCCAGGCAACCCCCGGGGCAACTGGCCGCCTA CGGTCGCCGGCCAGGCAACCCCCAGGGCAACTGGCCGCCTA < 41bp 0.79478384575093 0.579602001859422 0.8199142 0.3863792 prediction 0.430363687783014 Functional Loss - KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34838878 chr19:34838881 nonsynonymous SNV 0.981 3 24 hm5C_associated_SNPs_85427 0 0 1 0 1 KIAA0355 chr19:34838782 3'AG 34838782 Downstream 100bp
chr12 48359774 48359774 1 + C T LAML 48359771 + 48359751 48359791 41 CAAGACTCCCTTGTAATTCTCACCATCATGGTAAGCCTTAG CAAGACTCCCTTGTAATTCTCACTATCATGGTAAGCCTTAG < 41bp 0.715180950677844 0.492193920337345 0.048547685 0.070370406 prediction 0.430361901355688 Functional Loss - TMEM106C ENSG00000134291 CDS Human protein_coding chr12:48359771 chr12:48359774 synonymous SNV . 0 24 hm5C_associated_SNPs_85428 0 0 1 0 1 TMEM106C chr12:48359780 5'GT 48359780 Upstream 7bp
chr17 60525998 60525998 1 + C T UCEC 60525995 + 60525975 60526015 41 AAGTTCAGAACCTGGTGGATCGCCGACTGCAGGTGAACCGA AAGTTCAGAACCTGGTGGATCGCTGACTGCAGGTGAACCGA < 41bp 0.738187684452858 0.5230108942252 0.46350467 0.1484007 prediction 0.430353580455316 Functional Loss - METTL2A ENSG00000087995 CDS Human protein_coding chr17:60525995 chr17:60525998 stopgain 0.686 1 24 hm5C_associated_SNPs_85430 0 0 1 0 1 METTL2A chr17:60525936 3'AG 60525936 Downstream 63bp
chr11 20385921 20385921 1 + A T LUSC 20385917 + 20385897 20385937 41 CCTGGAGCAGGGCCTGTTTTCCAAAGTCACGCTCATTGGCC CCTGGAGCAGGGCCTGTTTTCCAATGTCACGCTCATTGGCC < 41bp 0.71517419630173 0.397331926513723 0.8562321 0.6987164 prediction 0.430348392603459 Functional Loss - HTATIP2 ENSG00000109854 CDS Human protein_coding chr11:20385917 chr11:20385921 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_85433 0 0 0 0 1 HTATIP2 chr11:20385978 5'GT 20385978 Upstream 58bp
chr4 90830522 90830522 1 + G T LUAD 90830520 + 90830500 90830540 41 GGTGGGAAAGGACCTTGTGGCTGGACCGGTGGATCCTGTCC GGTGGGAAAGGACCTTGTGGCTTGACCGGTGGATCCTGTCC < 41bp 0.907604556726769 0.692432521890184 0.43949485 0.25628805 prediction 0.43034406967317 Functional Loss - MMRN1 ENSG00000138722 CDS Human protein_coding chr4:90830520 chr4:90830522 nonsynonymous SNV 0.979 4 23 hm5C_associated_SNPs_85434 0 0 0 0 2 MMRN1 chr4:90830427 3'AG 90830427 Downstream 96bp
chr4 90830522 90830522 1 + G T LUAD 90830520 + 90830500 90830540 41 GGTGGGAAAGGACCTTGTGGCTGGACCGGTGGATCCTGTCC GGTGGGAAAGGACCTTGTGGCTTGACCGGTGGATCCTGTCC < 41bp 0.907604556726769 0.692432521890184 0.43949485 0.25628805 prediction 0.43034406967317 Functional Loss - MMRN1 ENSG00000138722 CDS Human protein_coding chr4:90830520 chr4:90830522 nonsynonymous SNV 0.979 4 23 hm5C_associated_SNPs_85434 0 0 0 0 2 MMRN1 chr4:90830546 5'GT 90830546 Upstream 25bp
chr11 112071464 112071464 1 + C T rs115780398 112071462 + 112071442 112071482 41 CTGGGAACCCCAGTGTAATACGCGGTTTCATGTGGTGGAAA CTGGGAACCCCAGTGTAATACGTGGTTTCATGTGGTGGAAA < 41bp 0.853922875675227 0.638752427314144 0.43120083 0.39692664 prediction 0.430340896722165 Functional Loss - BCO2 ENSG00000197580 CDS Human protein_coding chr11:112071462 chr11:112071464 nonsynonymous SNV 0.069 2 23 hm5C_associated_SNPs_85436 0 0 0 0 1 BCO2 chr11:112071496 5'GT 112071496 Upstream 33bp
chr9 82324604 82324604 1 + G T UCEC 82324602 + 82324582 82324622 41 TCCAAACCTGACAGGCATTCCAGGAGGAAAACCGTGAGTAC TCCAAACCTGACAGGCATTCCATGAGGAAAACCGTGAGTAC < 41bp 0.905478299239372 0.690309486283919 0.9108715 0.35836348 prediction 0.430337625910906 Functional Loss - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82324602 chr9:82324604 stopgain 1.000 1 23 hm5C_associated_SNPs_85438 0 0 0 0 2 TLE4 chr9:82324538 3'AG 82324538 Downstream 67bp
chr9 82324604 82324604 1 + G T UCEC 82324602 + 82324582 82324622 41 TCCAAACCTGACAGGCATTCCAGGAGGAAAACCGTGAGTAC TCCAAACCTGACAGGCATTCCATGAGGAAAACCGTGAGTAC < 41bp 0.905478299239372 0.690309486283919 0.9108715 0.35836348 prediction 0.430337625910906 Functional Loss - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82324602 chr9:82324604 stopgain 1.000 1 23 hm5C_associated_SNPs_85438 0 0 0 0 2 TLE4 chr9:82324614 5'GT 82324614 Upstream 11bp
chr19 57060365 57060365 1 + A C LUSC 57060364 + 57060344 57060384 41 AAGATCAAGGAGTTACCTCTCAAGAAGGACTTCTGCGAAGG AAGATCAAGGAGTTACCTCTCCAGAAGGACTTCTGCGAAGG < 41bp 0.826633085930108 0.611466193405192 0.31086546 0.10702616 prediction 0.430333785049833 Functional Loss - ZFP28 ENSG00000196867 CDS Human protein_coding chr19:57060364 chr19:57060365 nonsynonymous SNV 0.284 1 22 hm5C_associated_SNPs_85442 0 0 1 0 1 ZFP28 chr19:57060327 3'AG 57060327 Downstream 39bp
chrX 69625735 69625735 1 + G A BRCA 69625732 + 69625712 69625752 41 AGCAAAATCAGCAGCTTCTCCGAGAGAATGAAATCATCAAG AGCAAAATCAGCAGCTTCTCCGAAAGAATGAAATCATCAAG < 41bp 0.715163622544869 0.478897174414685 0.62365955 0.35786575 prediction 0.430327245089737 Functional Loss - KIF4A ENSG00000090889 CDS Human protein_coding chrX:69625732 chrX:69625735 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_85444 0 0 0 0 2 KIF4A chrX:69625678 3'AG 69625678 Downstream 58bp
chrX 69625735 69625735 1 + G A BRCA 69625732 + 69625712 69625752 41 AGCAAAATCAGCAGCTTCTCCGAGAGAATGAAATCATCAAG AGCAAAATCAGCAGCTTCTCCGAAAGAATGAAATCATCAAG < 41bp 0.715163622544869 0.478897174414685 0.62365955 0.35786575 prediction 0.430327245089737 Functional Loss - KIF4A ENSG00000090889 CDS Human protein_coding chrX:69625732 chrX:69625735 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_85444 0 0 0 0 2 KIF4A chrX:69625755 5'GT 69625755 Upstream 21bp
chr9 140034178 140034178 1 + G T COAD 140034175 + 140034155 140034195 41 CAGATGGCTCTGTCGGTGTGCGAGGACCTCATCTCCAGCCA CAGATGGCTCTGTCGGTGTGCGATGACCTCATCTCCAGCCA < 41bp 0.715159245222292 0.347057423076959 0.80690086 0.18517902 prediction 0.430318490444584 Functional Loss - GRIN1 ENSG00000176884 CDS Human protein_coding chr9:140034175 chr9:140034178 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_85448 0 0 0 0 1 GRIN1 chr9:140034196 5'GT 140034196 Upstream 19bp
chr1 28211907 28211907 1 + G T BLCA 28211904 + 28211884 28211924 41 GATGGCTCCAGTACGTACAGCAAGATTCCTGCCCACAGGAA GATGGCTCCAGTACGTACAGCAATATTCCTGCCCACAGGAA < 41bp 0.71515662836459 0.316196084417197 0.20845392 0.11876646 prediction 0.430313256729181 Functional Loss - THEMIS2 ENSG00000130775 CDS Human protein_coding chr1:28211904 chr1:28211907 nonsynonymous SNV 0.073 0 24 hm5C_associated_SNPs_85450 0 0 0 0 1 THEMIS2 chr1:28211962 5'GT 28211962 Upstream 56bp
chr19 39868421 39868421 1 + C T CESC 39868418 + 39868398 39868438 41 GAGCCTGCCCCGGCTCCCGTCGCCGACGGAGACATCCCCAG GAGCCTGCCCCGGCTCCCGTCGCTGACGGAGACATCCCCAG < 41bp 0.742868139030426 0.527713200914379 0.3086431 0.09424949 prediction 0.430309876232093 Functional Loss - SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39868418 chr19:39868421 synonymous SNV . 0 24 hm5C_associated_SNPs_85451 0 0 1 0 1 SAMD4B chr19:39868464 5'GT 39868464 Upstream 44bp
chr16 81295874 81295874 1 + G A SKCM 81295871 + 81295851 81295891 41 GGAAAATCAACCCACAGACTCTGGAAACCCTGGAGAAGGTA GGAAAATCAACCCACAGACTCTGAAAACCCTGGAGAAGGTA < 41bp 0.786741045105584 0.571586536206436 0.3836223 0.09195569 prediction 0.430309017798296 Functional Loss - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81295871 chr16:81295874 nonsynonymous SNV 0.981 3 24 hm5C_associated_SNPs_85452 0 0 0 0 1 BCO1 chr16:81295888 5'GT 81295888 Upstream 15bp
chr19 58740598 58740598 1 + G A rs77311703 58740595 + 58740575 58740615 41 GAGGCTCTCCTGCTGCAGAGCTGGGAGGGAACTTATAGTAC GAGGCTCTCCTGCTGCAGAGCTGAGAGGGAACTTATAGTAC < 41bp 0.768973107958984 0.553820125548568 0.3414325 0.13336998 prediction 0.430305964820833 Functional Loss - ZNF544 ENSG00000198131 UTR5 Human protein_coding chr19:58740595 chr19:58740598 . . 0 24 hm5C_associated_SNPs_85454 0 0 0 0 1 ZNF544 chr19:58740622 5'GT 58740622 Upstream 25bp
chr10 86008773 86008773 1 + G A SKCM 86008770 + 86008750 86008790 41 CTGCAGCAGTGCAGCCATCGCATGGGGGCGTTATCACCACT CTGCAGCAGTGCAGCCATCGCATAGGGGCGTTATCACCACT < 41bp 0.715149603201628 0.461081600226007 0.8643838 0.30083784 prediction 0.430299206403257 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86008770 chr10:86008773 stopgain 0.977 1 24 hm5C_associated_SNPs_85457 0 0 0 0 2 RGR chr10:86008678 3'AG 86008678 Downstream 96bp
chr10 86008773 86008773 1 + G A SKCM 86008770 + 86008750 86008790 41 CTGCAGCAGTGCAGCCATCGCATGGGGGCGTTATCACCACT CTGCAGCAGTGCAGCCATCGCATAGGGGCGTTATCACCACT < 41bp 0.715149603201628 0.461081600226007 0.8643838 0.30083784 prediction 0.430299206403257 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86008770 chr10:86008773 stopgain 0.977 1 24 hm5C_associated_SNPs_85457 0 0 0 0 2 RGR chr10:86008799 5'GT 86008799 Upstream 27bp
chr6 109274505 109274505 1 + G A rs199732181 109274502 + 109274482 109274522 41 GCCATCCACCCGGGCGTGGGCCCGGTGCTGGCCGCCAACCC GCCATCCACCCGGGCGTGGGCCCAGTGCTGGCCGCCAACCC < 41bp 0.812548948599837 0.597403995183086 0.8916404 0.8027954 prediction 0.430289906833503 Functional Loss - ARMC2 ENSG00000118690 CDS Human protein_coding chr6:109274502 chr6:109274505 synonymous SNV . 0 24 hm5C_associated_SNPs_85458 0 0 0 0 1 ARMC2 chr6:109274554 5'GT 109274554 Upstream 50bp
chr18 32821032 32821032 1 + C T rs566067080 32821030 + 32821010 32821050 41 CCGGTCTTTGTGGCTTGCAGCTCGGGGTGGGTGGCTCATTT CCGGTCTTTGTGGCTTGCAGCTTGGGGTGGGTGGCTCATTT < 41bp 0.738212815364807 0.523082420017473 0.61216205 0.59213924 prediction 0.430260790694667 Functional Loss - ZNF397 ENSG00000186812 UTR5 Human protein_coding chr18:32821030 chr18:32821032 . . 0 23 hm5C_associated_SNPs_85463 0 0 1 0 1 ZNF397 chr18:32821073 5'GT 32821073 Upstream 42bp
chr10 5248332 5248332 1 + G T rs201298644 5248329 + 5248309 5248349 41 GGAGATGATCCTCAACAAGCCAGGACTCAAGTACAAGCCTG GGAGATGATCCTCAACAAGCCAGTACTCAAGTACAAGCCTG < 41bp 0.93211510204909 0.716986288129525 0.7203645 0.86418664 prediction 0.430257627839129 Functional Loss - AKR1C4 ENSG00000198610 CDS Human protein_coding chr10:5248329 chr10:5248332 nonsynonymous SNV 0.840 4 24 hm5C_associated_SNPs_85464 0 0 0 0 2 AKR1C4 chr10:5248238 3'AG 5248238 Downstream 95bp
chr10 5248332 5248332 1 + G T rs201298644 5248329 + 5248309 5248349 41 GGAGATGATCCTCAACAAGCCAGGACTCAAGTACAAGCCTG GGAGATGATCCTCAACAAGCCAGTACTCAAGTACAAGCCTG < 41bp 0.93211510204909 0.716986288129525 0.7203645 0.86418664 prediction 0.430257627839129 Functional Loss - AKR1C4 ENSG00000198610 CDS Human protein_coding chr10:5248329 chr10:5248332 nonsynonymous SNV 0.840 4 24 hm5C_associated_SNPs_85464 0 0 0 0 2 AKR1C4 chr10:5248360 5'GT 5248360 Upstream 29bp
chr2 228145304 228145304 1 + G A BLCA 228145301 + 228145281 228145321 41 AAATGAAGGGCTTGATGGACCACGAGGTACAATAGCAAGTG AAATGAAGGGCTTGATGGACCACAAGGTACAATAGCAAGTG < 41bp 0.715128733597862 0.488066839191824 0.21045789 0.0798237 prediction 0.430257467195724 Functional Loss - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228145301 chr2:228145304 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_85465 0 0 0 0 1 COL4A3 chr2:228145306 5'GT 228145306 Upstream 3bp
chr16 76573654 76573654 1 + G T LUAD 76573651 + 76573631 76573671 41 GGTACAAGTTAAATAAATATCAAGAGCCTGATGTTGTTAAC GGTACAAGTTAAATAAATATCAATAGCCTGATGTTGTTAAC < 41bp 0.715127939444122 0.344800779803138 0.09607133 0.09289178 prediction 0.430255878888244 Functional Loss - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76573651 chr16:76573654 stopgain 0.997 0 24 hm5C_associated_SNPs_85466 0 0 0 0 2 CNTNAP4 chr16:76573616 3'AG 76573616 Downstream 39bp
chr16 76573654 76573654 1 + G T LUAD 76573651 + 76573631 76573671 41 GGTACAAGTTAAATAAATATCAAGAGCCTGATGTTGTTAAC GGTACAAGTTAAATAAATATCAATAGCCTGATGTTGTTAAC < 41bp 0.715127939444122 0.344800779803138 0.09607133 0.09289178 prediction 0.430255878888244 Functional Loss - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76573651 chr16:76573654 stopgain 0.997 0 24 hm5C_associated_SNPs_85466 0 0 0 0 2 CNTNAP4 chr16:76573749 5'GT 76573749 Upstream 96bp
chr7 100275215 100275215 1 + G T SARC 100275213 + 100275193 100275233 41 TGTGGGGGGTTGGACAACATCTGCTCCATCTACAGCCTCAA TGTGGGGGGTTGGACAACATCTTCTCCATCTACAGCCTCAA < 41bp 0.715127445965958 0.375107812192564 0.053097755 0.018760055 prediction 0.430254891931916 Functional Loss - GNB2 ENSG00000172354 CDS Human protein_coding chr7:100275213 chr7:100275215 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_85467 0 0 1 0 2 GNB2 chr7:100275121 3'AG 100275121 Downstream 95bp
chr7 100275215 100275215 1 + G T SARC 100275213 + 100275193 100275233 41 TGTGGGGGGTTGGACAACATCTGCTCCATCTACAGCCTCAA TGTGGGGGGTTGGACAACATCTTCTCCATCTACAGCCTCAA < 41bp 0.715127445965958 0.375107812192564 0.053097755 0.018760055 prediction 0.430254891931916 Functional Loss - GNB2 ENSG00000172354 CDS Human protein_coding chr7:100275213 chr7:100275215 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_85467 0 0 1 0 2 GNB2 chr7:100275283 5'GT 100275283 Upstream 69bp
chr16 56920351 56920351 1 + G A SKCM 56920348 + 56920328 56920368 41 GACTTTGTGGGCACCTTCACCCGGAACCTCAGCCTGATGAT GACTTTGTGGGCACCTTCACCCGAAACCTCAGCCTGATGAT < 41bp 0.715126208624742 0.460600866058869 0.90739065 0.29576218 prediction 0.430252417249485 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56920348 chr16:56920351 synonymous SNV . 0 24 hm5C_associated_SNPs_85468 0 0 0 0 2 SLC12A3 chr16:56920276 3'AG 56920276 Downstream 76bp
chr16 56920351 56920351 1 + G A SKCM 56920348 + 56920328 56920368 41 GACTTTGTGGGCACCTTCACCCGGAACCTCAGCCTGATGAT GACTTTGTGGGCACCTTCACCCGAAACCTCAGCCTGATGAT < 41bp 0.715126208624742 0.460600866058869 0.90739065 0.29576218 prediction 0.430252417249485 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56920348 chr16:56920351 synonymous SNV . 0 24 hm5C_associated_SNPs_85468 0 0 0 0 2 SLC12A3 chr16:56920387 5'GT 56920387 Upstream 37bp
chr6 27220630 27220630 1 + G A GBM 27220627 + 27220607 27220647 41 CCAGAAGTGTTTAAGCTTTTCCCGAGCAGAGACAGTGGCAC CCAGAAGTGTTTAAGCTTTTCCCAAGCAGAGACAGTGGCAC < 41bp 0.715123909025639 0.47176936285674 0.17318282 0.09811109 prediction 0.430247818051277 Functional Loss - PRSS16 ENSG00000112812 CDS Human protein_coding chr6:27220627 chr6:27220630 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_85469 0 0 0 0 1 PRSS16 chr6:27220587 3'AG 27220587 Downstream 44bp
chr2 168675206 168675206 1 + G A rs836723 168675203 + 168675183 168675223 41 GCTACGCAGCTTGCTCCTGGCACGGGCACCTTGAATCTCCT GCTACGCAGCTTGCTCCTGGCACAGGCACCTTGAATCTCCT < 41bp 0.715119624966928 0.489283573992646 0.18426436 0.11717743 prediction 0.430239249933856 Functional Loss - LOC105616981 ENSG00000235335 ncRNA_intronic Human antisense chr2:168675203 chr2:168675206 . . 0 24 hm5C_associated_SNPs_85473 0 0 0 0 1 LOC105616981 chr2:168675303 5'GT 168675303 Upstream 98bp
chr1 151504914 151504914 1 + C T LUAD 151504911 + 151504891 151504931 41 GGGAGGACTCTAAGCAAGCCCTGCAGCAGCTCCAGGCCCAG GGGAGGACTCTAAGCAAGCCCTGTAGCAGCTCCAGGCCCAG < 41bp 0.748781051554943 0.533666090404497 0.23472986 0.33853397 prediction 0.430229922300894 Functional Loss - CGN ENSG00000143375 CDS Human protein_coding chr1:151504911 chr1:151504914 stopgain 0.996 0 24 hm5C_associated_SNPs_85474 0 0 0 0 1 CGN chr1:151504878 3'AG 151504878 Downstream 37bp
chr16 67644820 67644820 1 + C T COAD 67644817 + 67644797 67644837 41 AGAGAAAGACTTACCAGAGACGCCGGGAAGGGGGCCAGGAA AGAGAAAGACTTACCAGAGACGCTGGGAAGGGGGCCAGGAA < 41bp 0.759233792528998 0.544119027225407 0.3436951 0.36118016 prediction 0.430229530607181 Functional Loss - CTCF ENSG00000102974 CDS Human protein_coding chr16:67644817 chr16:67644820 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_85475 0 0 1 0 1 CTCF chr16:67644727 3'AG 67644727 Downstream 94bp
chr12 53673580 53673580 1 + C T UCEC 53673578 + 53673558 53673598 41 TCTGAGAGACTGAAGGACCACTCGAAGGCAGCTGGCTCCTC TCTGAGAGACTGAAGGACCACTTGAAGGCAGCTGGCTCCTC < 41bp 0.868116231750763 0.653005362367931 0.810221 0.20348692 prediction 0.430221738765663 Functional Loss - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53673578 chr12:53673580 nonsynonymous SNV 0.054 0 23 hm5C_associated_SNPs_85479 0 0 1 0 2 ESPL1 chr12:53673516 3'AG 53673516 Downstream 65bp
chr12 53673580 53673580 1 + C T UCEC 53673578 + 53673558 53673598 41 TCTGAGAGACTGAAGGACCACTCGAAGGCAGCTGGCTCCTC TCTGAGAGACTGAAGGACCACTTGAAGGCAGCTGGCTCCTC < 41bp 0.868116231750763 0.653005362367931 0.810221 0.20348692 prediction 0.430221738765663 Functional Loss - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53673578 chr12:53673580 nonsynonymous SNV 0.054 0 23 hm5C_associated_SNPs_85479 0 0 1 0 2 ESPL1 chr12:53673650 5'GT 53673650 Upstream 71bp
chr11 47178675 47178675 1 + C T OV 47178672 + 47178652 47178692 41 CGTCCAGTGGGCAGCACCGCCAACGACCTGCCTTGGGCGGG CGTCCAGTGGGCAGCACCGCCAATGACCTGCCTTGGGCGGG < 41bp 0.719616427801121 0.504508001793425 0.24306339 0.30513558 prediction 0.430216852015392 Functional Loss - C11orf49 ENSG00000149179 CDS Human protein_coding chr11:47178672 chr11:47178675 stopgain 0.816 0 24 hm5C_associated_SNPs_85481 0 0 0 0 1 C11orf49 chr11:47178769 5'GT 47178769 Upstream 95bp
chr3 126446002 126446002 1 + G T UCEC 126445999 + 126445979 126446019 41 CATCTTCTACCTTTGGCCTTCAAGATGGCAACTTGAGAGCC CATCTTCTACCTTTGGCCTTCAATATGGCAACTTGAGAGCC < 41bp 0.715107599185114 0.325959551479397 0.5860189 0.27768567 prediction 0.430215198370228 Functional Loss - CHCHD6 ENSG00000159685 CDS Human protein_coding chr3:126445999 chr3:126446002 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_85482 0 0 1 0 2 CHCHD6 chr3:126445921 3'AG 126445921 Downstream 82bp
chr3 126446002 126446002 1 + G T UCEC 126445999 + 126445979 126446019 41 CATCTTCTACCTTTGGCCTTCAAGATGGCAACTTGAGAGCC CATCTTCTACCTTTGGCCTTCAATATGGCAACTTGAGAGCC < 41bp 0.715107599185114 0.325959551479397 0.5860189 0.27768567 prediction 0.430215198370228 Functional Loss - CHCHD6 ENSG00000159685 CDS Human protein_coding chr3:126445999 chr3:126446002 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_85482 0 0 1 0 2 CHCHD6 chr3:126446029 5'GT 126446029 Upstream 28bp
chr9 33246723 33246723 1 + G A STAD 33246720 + 33246700 33246740 41 TGAATGCCAGCTCTGCTTGGCCCGGATGTAAGTCTGCCCCA TGAATGCCAGCTCTGCTTGGCCCAGATGTAAGTCTGCCCCA < 41bp 0.715106966748147 0.463316464951127 0.20093066 0.25061077 prediction 0.430213933496294 Functional Loss - SPINK4 ENSG00000122711 CDS Human protein_coding chr9:33246720 chr9:33246723 nonsynonymous SNV 0.332 2 24 hm5C_associated_SNPs_85484 0 0 0 0 1 SPINK4 chr9:33246726 5'GT 33246726 Upstream 4bp
chr14 100934422 100934422 1 + G C HNSC 100934421 + 100934401 100934441 41 CCCTGCACACAGAGGCAGTGCGGGCCGCCCGGTGGGCTCCC CCCTGCACACAGAGGCAGTGCCGGCCGCCCGGTGGGCTCCC < 41bp 0.715105622406788 0.39508011099096 0.7820673 0.3445648 prediction 0.430211244813576 Functional Loss - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100934421 chr14:100934422 nonsynonymous SNV 0.979 4 22 hm5C_associated_SNPs_85485 0 0 0 0 2 WDR25 chr14:100934358 3'AG 100934358 Downstream 65bp
chr14 100934422 100934422 1 + G C HNSC 100934421 + 100934401 100934441 41 CCCTGCACACAGAGGCAGTGCGGGCCGCCCGGTGGGCTCCC CCCTGCACACAGAGGCAGTGCCGGCCGCCCGGTGGGCTCCC < 41bp 0.715105622406788 0.39508011099096 0.7820673 0.3445648 prediction 0.430211244813576 Functional Loss - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100934421 chr14:100934422 nonsynonymous SNV 0.979 4 22 hm5C_associated_SNPs_85485 0 0 0 0 2 WDR25 chr14:100934505 5'GT 100934505 Upstream 84bp
chr3 33906879 33906879 1 + C T UCEC 33906876 + 33906856 33906896 41 CGCCTGGCTCAGCTCCTCCTCCACAGGCGCAGGGACCACCC CGCCTGGCTCAGCTCCTCCTCCATAGGCGCAGGGACCACCC < 41bp 0.735979412539854 0.520874087541121 0.20520061 0.52031 prediction 0.430210649997466 Functional Loss - PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906876 chr3:33906879 stopgain 0.989 1 24 hm5C_associated_SNPs_85487 0 0 1 0 1 PDCD6IP chr3:33906922 5'GT 33906922 Upstream 44bp
chr22 42032746 42032746 1 + G A LGG 42032743 + 42032723 42032763 41 AGTGCCAAAGCCAGCCGGGCCAGGACCAAAGCCGGTGATCT AGTGCCAAAGCCAGCCGGGCCAGAACCAAAGCCGGTGATCT < 41bp 0.807714813547215 0.592610391182255 0.41205546 0.3061633 prediction 0.430208844729921 Functional Loss - XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42032743 chr22:42032746 synonymous SNV . 0 24 hm5C_associated_SNPs_85489 0 0 1 0 1 XRCC6 chr22:42032774 5'GT 42032774 Upstream 29bp
chr15 74504514 74504514 1 + G A rs140030547 74504511 + 74504491 74504531 41 GCAGGATGAGTGGCGCTGGTCTCGGGATCCGCAGAGTCTAC GCAGGATGAGTGGCGCTGGTCTCAGGATCCGCAGAGTCTAC < 41bp 0.806315773959777 0.591212335924998 0.26112366 0.07908934 prediction 0.430206876069557 Functional Loss - STRA6;CCDC33 ENSG00000259264 ncRNA_exonic Human other chr15:74504511 chr15:74504514 . . 0 24 hm5C_associated_SNPs_85492 0 0 0 0 1 STRA6;CCDC33 chr15:74504487 3'AG 74504487 Downstream 28bp
chr1 22903323 22903323 1 + G T LUAD 22903321 + 22903301 22903341 41 GGCGAGTGGCTCGTGCCCATCGGCAAATGCGTGTGCAGTGC GGCGAGTGGCTCGTGCCCATCGTCAAATGCGTGTGCAGTGC < 41bp 0.905670123944456 0.690566710802042 0.883117 0.8715757 prediction 0.430206826284829 Functional Loss - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22903321 chr1:22903323 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_85493 0 0 0 0 1 EPHA8 chr1:22903373 5'GT 22903373 Upstream 51bp
chr11 65715491 65715491 1 + G A UCEC 65715488 + 65715468 65715508 41 GCAGGCCCCCAAAAGCTGCCCTGGAAGACTTTGAGGGCTGC GCAGGCCCCCAAAAGCTGCCCTGAAAGACTTTGAGGGCTGC < 41bp 0.715101980036468 0.487990438865426 0.22875327 0.10620919 prediction 0.430203960072937 Functional Loss - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65715488 chr11:65715491 unknown 0.428 0 24 hm5C_associated_SNPs_85494 0 0 0 0 1 TSGA10IP chr11:65715472 3'AG 65715472 Downstream 20bp
chr16 15528603 15528603 1 + G C rs3743523 15528599 + 15528579 15528619 41 GGAGGAGACGGCTTGGAAAACGGAGAGACTGGGGAGAAGTG GGAGGAGACGGCTTGGAAAACGGACAGACTGGGGAGAAGTG < 41bp 0.85752771605322 0.642432089980452 0.5764637 0.22028711 prediction 0.430191252145537 Functional Loss - C16orf45 ENSG00000166780 CDS Human protein_coding chr16:15528599 chr16:15528603 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_85498 0 0 0 0 1 C16orf45 chr16:15528616 5'GT 15528616 Upstream 14bp
chr15 40293219 40293219 1 + G A LUSC 40293216 + 40293196 40293236 41 TCATCTCCTGGCTGTTGAACCACGATCCAGCAAAACGGCCC TCATCTCCTGGCTGTTGAACCACAATCCAGCAAAACGGCCC < 41bp 0.775944868817305 0.560849598213127 0.05323863 0.048828393 prediction 0.430190541208356 Functional Loss - EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40293216 chr15:40293219 nonsynonymous SNV 0.866 3 24 hm5C_associated_SNPs_85499 0 0 1 0 1 EIF2AK4 chr15:40293189 3'AG 40293189 Downstream 31bp
chr1 156883246 156883246 1 + G A SKCM 156883243 + 156883223 156883263 41 GGCCAGGTGGGGCCCAAGGGCATGATAACCACACCACCCTG GGCCAGGTGGGGCCCAAGGGCATAATAACCACACCACCCTG < 41bp 0.810435925097156 0.595341218669671 0.1681835 0.12790477 prediction 0.43018941285497 Functional Loss - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156883243 chr1:156883246 nonsynonymous SNV 0.154 2 24 hm5C_associated_SNPs_85500 0 0 0 0 2 PEAR1 chr1:156883183 3'AG 156883183 Downstream 64bp
chr1 156883246 156883246 1 + G A SKCM 156883243 + 156883223 156883263 41 GGCCAGGTGGGGCCCAAGGGCATGATAACCACACCACCCTG GGCCAGGTGGGGCCCAAGGGCATAATAACCACACCACCCTG < 41bp 0.810435925097156 0.595341218669671 0.1681835 0.12790477 prediction 0.43018941285497 Functional Loss - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156883243 chr1:156883246 nonsynonymous SNV 0.154 2 24 hm5C_associated_SNPs_85500 0 0 0 0 2 PEAR1 chr1:156883315 5'GT 156883315 Upstream 70bp
chr17 4686283 4686283 1 + T C COAD 4686282 + 4686262 4686302 41 TAGTACTGTGTGGGATCCAGCTGGTGAACGCGACCATTGGT TAGTACTGTGTGGGATCCAGCCGGTGAACGCGACCATTGGT < 41bp 0.715086588197645 0.479161651350331 0.5702935 0.899595 prediction 0.43017317639529 Functional Loss - TM4SF5 ENSG00000142484 CDS Human protein_coding chr17:4686282 chr17:4686283 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_85507 0 0 1 0 1 TM4SF5 chr17:4686332 5'GT 4686332 Upstream 50bp
chr22 25597388 25597388 1 + G A UCEC 25597385 + 25597365 25597405 41 TGGCGGAACAGCACGGAGCACCCGAACAGGCTGCAGCTGGC TGGCGGAACAGCACGGAGCACCCAAACAGGCTGCAGCTGGC < 41bp 0.715085864849826 0.470366254622324 0.06943187 0.028120816 prediction 0.430171729699651 Functional Loss - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25597385 chr22:25597388 nonsynonymous SNV 0.419 0 24 hm5C_associated_SNPs_85509 1 0 0 0 2 CRYBB3 chr22:25597344 3'AG 25597344 Downstream 45bp
chr22 25597388 25597388 1 + G A UCEC 25597385 + 25597365 25597405 41 TGGCGGAACAGCACGGAGCACCCGAACAGGCTGCAGCTGGC TGGCGGAACAGCACGGAGCACCCAAACAGGCTGCAGCTGGC < 41bp 0.715085864849826 0.470366254622324 0.06943187 0.028120816 prediction 0.430171729699651 Functional Loss - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25597385 chr22:25597388 nonsynonymous SNV 0.419 0 24 hm5C_associated_SNPs_85509 1 0 0 0 2 CRYBB3 chr22:25597438 5'GT 25597438 Upstream 51bp
chr3 108356375 108356375 1 + C T rs143396703 108356372 + 108356352 108356392 41 GTGAGAAAGGATGAATATATCACCATTGAAAATTTAGGAGC GTGAGAAAGGATGAATATATCACTATTGAAAATTTAGGAGC < 41bp 0.715084814893858 0.498945501787976 0.096572995 0.10631189 prediction 0.430169629787716 Functional Loss - DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108356372 chr3:108356375 synonymous SNV . 0 24 hm5C_associated_SNPs_85510 0 0 1 0 2 DZIP3 chr3:108356343 3'AG 108356343 Downstream 33bp
chr3 108356375 108356375 1 + C T rs143396703 108356372 + 108356352 108356392 41 GTGAGAAAGGATGAATATATCACCATTGAAAATTTAGGAGC GTGAGAAAGGATGAATATATCACTATTGAAAATTTAGGAGC < 41bp 0.715084814893858 0.498945501787976 0.096572995 0.10631189 prediction 0.430169629787716 Functional Loss - DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108356372 chr3:108356375 synonymous SNV . 0 24 hm5C_associated_SNPs_85510 0 0 1 0 2 DZIP3 chr3:108356395 5'GT 108356395 Upstream 21bp
chr3 188925364 188925364 1 + G A UCEC 188925361 + 188925341 188925381 41 TTATCATCAGCCTTATATCTCACGGAAGTACTTTGCTACAC TTATCATCAGCCTTATATCTCACAGAAGTACTTTGCTACAC < 41bp 0.715083854933951 0.478942882812097 0.7008978 0.28982407 prediction 0.430167709867903 Functional Loss - TPRG1 ENSG00000188001 CDS Human protein_coding chr3:188925361 chr3:188925364 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_85512 0 0 0 0 1 TPRG1 chr3:188925383 5'GT 188925383 Upstream 20bp
chr20 19956386 19956386 1 + G C BLCA 19956382 + 19956362 19956402 41 AAGAACTATTTGTCTCAGAGCTCGGAGCTGGACCCCCCCAT AAGAACTATTTGTCTCAGAGCTCGCAGCTGGACCCCCCCAT < 41bp 0.715081046989908 0.429508024473763 0.4816132 0.24665594 prediction 0.430162093979817 Functional Loss - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19956382 chr20:19956386 nonsynonymous SNV 0.982 3 25 hm5C_associated_SNPs_85514 0 0 0 0 1 RIN2 chr20:19956431 5'GT 19956431 Upstream 46bp
chr1 26511561 26511561 1 + G A SKCM 26511558 + 26511538 26511578 41 CATGCCGTGAGCTGGGCCGGCCGGACTGTGACGGCTGGCTC CATGCCGTGAGCTGGGCCGGCCGAACTGTGACGGCTGGCTC < 41bp 0.792797298019186 0.5777198013118 0.4657298 0.38290238 prediction 0.430154993414772 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26511558 chr1:26511561 nonsynonymous SNV 0.078 4 24 hm5C_associated_SNPs_85516 0 0 0 0 1 CNKSR1 chr1:26511505 3'AG 26511505 Downstream 57bp
chr11 70281612 70281612 1 + G A rs12858 70281609 + 70281589 70281629 41 TCTCTTGTGTTCGTGTTGCCCTCGTGCCCATCAAGTGCAGT TCTCTTGTGTTCGTGTTGCCCTCATGCCCATCAAGTGCAGT < 41bp 0.715076288299518 0.469902961566544 0.023278445 0.028806925 prediction 0.430152576599036 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70281609 chr11:70281612 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_85518 0 0 1 0 1 CTTN chr11:70281572 3'AG 70281572 Downstream 41bp
chr1 151502527 151502527 1 + G A LUSC 151502524 + 151502504 151502544 41 GGAGCAGCAGCTGAAGGAGACTCGAGGTCTGGTGGATGGTG GGAGCAGCAGCTGAAGGAGACTCAAGGTCTGGTGGATGGTG < 41bp 0.715075446016059 0.467967560380421 0.836807 0.7665539 prediction 0.430150892032119 Functional Loss - CGN ENSG00000143375 CDS Human protein_coding chr1:151502524 chr1:151502527 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_85519 0 0 0 0 1 CGN chr1:151502591 5'GT 151502591 Upstream 65bp
chr16 3714438 3714438 1 - C G rs144787542 3714442 - 3714422 3714462 41 AGGAGGACATAGCAAAGCTGCTGCGCTACGAGTCCTCGGCG AGGAGGACATAGCAAAGCTGCTGCCCTACGAGTCCTCGGCG < 41bp 0.715071847575014 0.401867256562692 0.43422642 0.28784373 prediction 0.430143695150028 Functional Loss - TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3714442 chr16:3714438 nonsynonymous SNV 0.967 4 25 hm5C_associated_SNPs_85522 0 0 1 0 1 TRAP1 chr16:3714460 3'AG 3714460 Downstream 23bp
chr12 122669121 122669121 1 + G A BLCA 122669118 + 122669098 122669138 41 AACTTGGAGGGAGCTTGTCCCCAGAGAGGAGGATGTGGTGA AACTTGGAGGGAGCTTGTCCCCAAAGAGGAGGATGTGGTGA < 41bp 0.812339511689022 0.597269590126544 0.57417643 0.25937712 prediction 0.430139843124956 Functional Loss - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122669118 chr12:122669121 nonsynonymous SNV 0.022 0 24 hm5C_associated_SNPs_85523 0 0 0 3 1 LRRC43 chr12:122669066 3'AG 122669066 Downstream 56bp
chr19 41622241 41622241 1 + G A SKCM 41622238 + 41622218 41622258 41 ACCTGCTGCTGCTTTGCTCCCAAGACATGCTGACTTCTCTC ACCTGCTGCTGCTTTGCTCCCAAAACATGCTGACTTCTCTC < 41bp 0.800302891634069 0.585238162386661 0.75261164 0.46154505 prediction 0.430129458494817 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41622238 chr19:41622241 nonsynonymous SNV 0.862 0 24 hm5C_associated_SNPs_85525 0 0 0 1 1 CYP2F1 chr19:41622264 5'GT 41622264 Upstream 24bp
chr16 310110 310110 1 + C T COAD 310107 + 310087 310127 41 GGCAGTGAGGCACCTTCTGCCTGCATCCTGGTGGGCAGACC GGCAGTGAGGCACCTTCTGCCTGTATCCTGGTGGGCAGACC < 41bp 0.75543815887504 0.540385930416545 0.42648456 0.13739955 prediction 0.430104456916991 Functional Loss - FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:310107 chr16:310110 synonymous SNV . 0 24 hm5C_associated_SNPs_85531 0 0 1 0 1 FAM234A chr16:310159 5'GT 310159 Upstream 50bp
chr9 135865175 135865175 1 + C T BLCA 135865173 + 135865153 135865193 41 TGCGGCAAGGCCTTCAAGCGCTCGTCCACGCTGTCCACCCA TGCGGCAAGGCCTTCAAGCGCTTGTCCACGCTGTCCACCCA < 41bp 0.715050300496255 0.439528393831754 0.13081285 0.0738613 prediction 0.43010060099251 Functional Loss - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135865173 chr9:135865175 nonsynonymous SNV 0.915 4 23 hm5C_associated_SNPs_85532 0 0 0 0 1 GFI1B chr9:135865129 3'AG 135865129 Downstream 47bp
chr9 135865176 135865176 1 + G A STAD 135865173 + 135865153 135865193 41 TGCGGCAAGGCCTTCAAGCGCTCGTCCACGCTGTCCACCCA TGCGGCAAGGCCTTCAAGCGCTCATCCACGCTGTCCACCCA < 41bp 0.715050300496255 0.46834770126052 0.13081285 0.057816684 prediction 0.43010060099251 Functional Loss - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135865173 chr9:135865176 synonymous SNV . 0 24 hm5C_associated_SNPs_85533 0 0 0 0 1 GFI1B chr9:135865129 3'AG 135865129 Downstream 48bp
chr4 74347574 74347574 1 + G A SKCM 74347571 + 74347551 74347591 41 TAACCCTGCCCACACAACCTCGGGATATAGGTAAGAAATTT TAACCCTGCCCACACAACCTCGGAATATAGGTAAGAAATTT < 41bp 0.728900609104914 0.513865891534731 0.85294604 0.3438623 prediction 0.430069435140367 Functional Loss - AFM ENSG00000079557 CDS Human protein_coding chr4:74347571 chr4:74347574 nonsynonymous SNV 0.344 0 24 hm5C_associated_SNPs_85537 0 0 0 0 1 AFM chr4:74347580 5'GT 74347580 Upstream 7bp
chr17 73482483 73482483 1 + C T STAD 73482480 + 73482460 73482500 41 GTCGGGAGGTAGAGCGGAGGCTGCGAGGGATCATTGACCAA GTCGGGAGGTAGAGCGGAGGCTGTGAGGGATCATTGACCAA < 41bp 0.723877466404699 0.508843391634572 0.30904675 0.3913579 prediction 0.430068149540255 Functional Loss - TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73482480 chr17:73482483 stopgain 0.986 0 24 hm5C_associated_SNPs_85538 0 0 1 0 1 TMEM94 chr17:73482507 5'GT 73482507 Upstream 25bp
chr19 42818986 42818986 1 + G T COAD 42818982 + 42818962 42819002 41 ACCCGCTACCTGAGCTGCTCCAGTGGCCGCAGCTTCCGCTC ACCCGCTACCTGAGCTGCTCCAGTTGCCGCAGCTTCCGCTC < 41bp 0.726339791121736 0.511305890916831 0.48178935 0.31012297 prediction 0.430067800409811 Functional Loss - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42818982 chr19:42818986 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_85540 0 0 1 0 2 TMEM145 chr19:42818944 3'AG 42818944 Downstream 43bp
chr19 42818986 42818986 1 + G T COAD 42818982 + 42818962 42819002 41 ACCCGCTACCTGAGCTGCTCCAGTGGCCGCAGCTTCCGCTC ACCCGCTACCTGAGCTGCTCCAGTTGCCGCAGCTTCCGCTC < 41bp 0.726339791121736 0.511305890916831 0.48178935 0.31012297 prediction 0.430067800409811 Functional Loss - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42818982 chr19:42818986 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_85540 0 0 1 0 2 TMEM145 chr19:42819003 5'GT 42819003 Upstream 18bp
chr15 48551449 48551449 1 + G A rs528775721 48551446 + 48551426 48551466 41 CCATGACAAGACCTGCTCTCCTGGACATAACTCACGCCTTT CCATGACAAGACCTGCTCTCCTGAACATAACTCACGCCTTT < 41bp 0.741083215536554 0.526056227249858 0.8314758 0.37674737 prediction 0.430053976573392 Functional Loss - SLC12A1 ENSG00000074803 CDS Human protein_coding chr15:48551446 chr15:48551449 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_85543 0 0 0 0 2 SLC12A1 chr15:48551397 3'AG 48551397 Downstream 53bp
chr15 48551449 48551449 1 + G A rs528775721 48551446 + 48551426 48551466 41 CCATGACAAGACCTGCTCTCCTGGACATAACTCACGCCTTT CCATGACAAGACCTGCTCTCCTGAACATAACTCACGCCTTT < 41bp 0.741083215536554 0.526056227249858 0.8314758 0.37674737 prediction 0.430053976573392 Functional Loss - SLC12A1 ENSG00000074803 CDS Human protein_coding chr15:48551446 chr15:48551449 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_85543 0 0 0 0 2 SLC12A1 chr15:48551508 5'GT 48551508 Upstream 60bp
chr11 1080302 1080302 1 + G T LUAD 1080300 + 1080280 1080320 41 GGCACCGTATATGACGACATCGGGGACAGTGGCTGCGTTCC GGCACCGTATATGACGACATCGTGGACAGTGGCTGCGTTCC < 41bp 0.715026746700015 0.365421217621481 0.94961774 0.5578193 prediction 0.43005349340003 Functional Loss - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1080300 chr11:1080302 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_85544 0 0 0 0 2 MUC2 chr11:1080281 3'AG 1080281 Downstream 22bp
chr11 1080302 1080302 1 + G T LUAD 1080300 + 1080280 1080320 41 GGCACCGTATATGACGACATCGGGGACAGTGGCTGCGTTCC GGCACCGTATATGACGACATCGTGGACAGTGGCTGCGTTCC < 41bp 0.715026746700015 0.365421217621481 0.94961774 0.5578193 prediction 0.43005349340003 Functional Loss - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1080300 chr11:1080302 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_85544 0 0 0 0 2 MUC2 chr11:1080398 5'GT 1080398 Upstream 97bp
chr5 126862415 126862415 1 + G T UCEC 126862412 + 126862392 126862432 41 CCCAGAGGAGCAAGAAGACCCTAGAATTACTAGAGGTCAGG CCCAGAGGAGCAAGAAGACCCTATAATTACTAGAGGTCAGG < 41bp 0.715025876406268 0.347009776497796 0.2565102 0.25177807 prediction 0.430051752812536 Functional Loss - PRRC1 ENSG00000164244 CDS Human protein_coding chr5:126862412 chr5:126862415 nonsynonymous SNV 0.172 4 24 hm5C_associated_SNPs_85547 0 0 1 0 1 PRRC1 chr5:126862470 5'GT 126862470 Upstream 56bp
chr19 36435504 36435504 1 + G A LUAD 36435501 + 36435481 36435521 41 CTGACGGACCTGGCGTCAGGCCGGACCTACGATCTGTGCGT CTGACGGACCTGGCGTCAGGCCGAACCTACGATCTGTGCGT < 41bp 0.794003964974617 0.578978196256109 0.8446318 0.3092795 prediction 0.430051537437015 Functional Loss - LRFN3 ENSG00000126243 CDS Human protein_coding chr19:36435501 chr19:36435504 synonymous SNV . 0 24 hm5C_associated_SNPs_85548 0 0 0 0 1 LRFN3 chr19:36435450 3'AG 36435450 Downstream 55bp
chr15 76071746 76071746 1 + G A SARC 76071743 + 76071723 76071763 41 ATGCGCCTCAGAGTCGGTACCAAGAACTGGAATTAGCCCTG ATGCGCCTCAGAGTCGGTACCAAAAACTGGAATTAGCCCTG < 41bp 0.715023719929265 0.497076670143994 0.15131557 0.087279856 prediction 0.43004743985853 Functional Loss - MIR4313;UBE2Q2 ENSG00000187812 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:76071743 chr15:76071746 . . 0 24 hm5C_associated_SNPs_85549 0 0 0 0 1 MIR4313;UBE2Q2 chr15:76071814 5'GT 76071814 Upstream 69bp
chr7 31735191 31735191 1 + G A SKCM 31735188 + 31735168 31735208 41 TGAGTCAGACCAAAAAAAACCAAGGAGGAAAGATACACCGG TGAGTCAGACCAAAAAAAACCAAAGAGGAAAGATACACCGG < 41bp 0.782480726842096 0.567459834527288 0.8210491 0.5434518 prediction 0.430041784629616 Functional Loss - PPP1R17 ENSG00000106341 CDS Human protein_coding chr7:31735188 chr7:31735191 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_85551 0 0 0 0 1 PPP1R17 chr7:31735235 5'GT 31735235 Upstream 45bp
chr10 106166512 106166512 1 + C T OV 106166509 + 106166489 106166529 41 ACCCTGCAGAAGCGTCTCATCAGCAAGACTGAAGAGGTGGT ACCCTGCAGAAGCGTCTCATCAGTAAGACTGAAGAGGTGGT < 41bp 0.715018705971649 0.489972008122985 0.15034792 0.09541112 prediction 0.430037411943298 Functional Loss - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106166509 chr10:106166512 synonymous SNV . 0 24 hm5C_associated_SNPs_85553 0 0 0 0 2 CFAP58 chr10:106166447 3'AG 106166447 Downstream 66bp
chr10 106166512 106166512 1 + C T OV 106166509 + 106166489 106166529 41 ACCCTGCAGAAGCGTCTCATCAGCAAGACTGAAGAGGTGGT ACCCTGCAGAAGCGTCTCATCAGTAAGACTGAAGAGGTGGT < 41bp 0.715018705971649 0.489972008122985 0.15034792 0.09541112 prediction 0.430037411943298 Functional Loss - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106166509 chr10:106166512 synonymous SNV . 0 24 hm5C_associated_SNPs_85553 0 0 0 0 2 CFAP58 chr10:106166551 5'GT 106166551 Upstream 40bp
chr20 1276438 1276438 1 + C T rs185627856 1276436 + 1276416 1276456 41 GTAGACGGGAAGCCCCGAACCACGGGCCAACTGGGAAGTTG GTAGACGGGAAGCCCCGAACCATGGGCCAACTGGGAAGTTG < 41bp 0.799107884713159 0.584103973108971 0.2935024 0.2348463 prediction 0.430007823208376 Functional Loss - SNPH ENSG00000101298 UTR5 Human protein_coding chr20:1276436 chr20:1276438 . . 0 23 hm5C_associated_SNPs_85560 0 0 0 0 1 SNPH chr20:1276420 3'AG 1276420 Downstream 19bp
chr20 31887772 31887772 1 + C T SKCM 31887769 + 31887749 31887789 41 TATCCTGCCATCAAGGGTGACACCATTCAGCTCTACCTGGG TATCCTGCCATCAAGGGTGACACTATTCAGCTCTACCTGGG < 41bp 0.71500182943407 0.494177313044006 0.10332966 0.14734659 prediction 0.430003658868141 Functional Loss - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31887769 chr20:31887772 synonymous SNV . 0 24 hm5C_associated_SNPs_85561 0 0 0 0 2 BPIFB1 chr20:31887705 3'AG 31887705 Downstream 68bp
chr20 31887772 31887772 1 + C T SKCM 31887769 + 31887749 31887789 41 TATCCTGCCATCAAGGGTGACACCATTCAGCTCTACCTGGG TATCCTGCCATCAAGGGTGACACTATTCAGCTCTACCTGGG < 41bp 0.71500182943407 0.494177313044006 0.10332966 0.14734659 prediction 0.430003658868141 Functional Loss - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31887769 chr20:31887772 synonymous SNV . 0 24 hm5C_associated_SNPs_85561 0 0 0 0 2 BPIFB1 chr20:31887790 5'GT 31887790 Upstream 19bp
chr9 35750928 35750928 1 + G T SARC 35750926 + 35750906 35750946 41 ACAAACTGACCATTGGCTGCCAGCGTGTCAACTCCCCTATC ACAAACTGACCATTGGCTGCCATCGTGTCAACTCCCCTATC < 41bp 0.715001087069722 0.361593126627527 0.748755 0.11430016 prediction 0.430002174139444 Functional Loss - RGP1 ENSG00000107185 CDS Human protein_coding chr9:35750926 chr9:35750928 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_85562 0 0 1 0 2 RGP1 chr9:35750837 3'AG 35750837 Downstream 92bp
chr9 35750928 35750928 1 + G T SARC 35750926 + 35750906 35750946 41 ACAAACTGACCATTGGCTGCCAGCGTGTCAACTCCCCTATC ACAAACTGACCATTGGCTGCCATCGTGTCAACTCCCCTATC < 41bp 0.715001087069722 0.361593126627527 0.748755 0.11430016 prediction 0.430002174139444 Functional Loss - RGP1 ENSG00000107185 CDS Human protein_coding chr9:35750926 chr9:35750928 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_85562 0 0 1 0 2 RGP1 chr9:35750986 5'GT 35750986 Upstream 59bp
chr3 130698121 130698121 1 + G T PRAD 130698119 + 130698099 130698139 41 CTTTGGCTTCTGGTCCTGAACTGGGACAGCTGACATTTCTT CTTTGGCTTCTGGTCCTGAACTTGGACAGCTGACATTTCTT < 41bp 0.714989333977892 0.392697378483027 0.46660528 0.2854612 prediction 0.429978667955783 Functional Loss - ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130698119 chr3:130698121 synonymous SNV . 0 23 hm5C_associated_SNPs_85564 0 0 1 0 1 ATP2C1 chr3:130698093 3'AG 130698093 Downstream 29bp
chr17 30696361 30696361 1 + G T LUAD 30696359 + 30696339 30696379 41 AGTATCAACGTAATCTTCCTCGGCCAGGACAGGCCCCCATC AGTATCAACGTAATCTTCCTCGTCCAGGACAGGCCCCCATC < 41bp 0.714987330950647 0.373346811481509 0.39371383 0.15633273 prediction 0.429974661901293 Functional Loss - ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30696359 chr17:30696361 synonymous SNV . 0 23 hm5C_associated_SNPs_85565 0 0 1 0 1 ZNF207 chr17:30696314 3'AG 30696314 Downstream 48bp
chr20 43034788 43034788 1 + G T LUAD 43034785 + 43034765 43034805 41 CATCTGCGGGGACCGGGCCACGGGCAAACACTACGGTGCCT CATCTGCGGGGACCGGGCCACGGTCAAACACTACGGTGCCT < 41bp 0.714986955993599 0.312556509935648 0.89827 0.6284921 prediction 0.429973911987198 Functional Loss - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43034785 chr20:43034788 nonsynonymous SNV 0.796 5 24 hm5C_associated_SNPs_85566 0 0 1 0 2 HNF4A chr20:43034698 3'AG 43034698 Downstream 91bp
chr20 43034788 43034788 1 + G T LUAD 43034785 + 43034765 43034805 41 CATCTGCGGGGACCGGGCCACGGGCAAACACTACGGTGCCT CATCTGCGGGGACCGGGCCACGGTCAAACACTACGGTGCCT < 41bp 0.714986955993599 0.312556509935648 0.89827 0.6284921 prediction 0.429973911987198 Functional Loss - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43034785 chr20:43034788 nonsynonymous SNV 0.796 5 24 hm5C_associated_SNPs_85566 0 0 1 0 2 HNF4A chr20:43034872 5'GT 43034872 Upstream 85bp
chr20 43034787 43034787 1 + G T LUAD 43034785 + 43034765 43034805 41 CATCTGCGGGGACCGGGCCACGGGCAAACACTACGGTGCCT CATCTGCGGGGACCGGGCCACGTGCAAACACTACGGTGCCT < 41bp 0.714986955993599 0.348666336461947 0.89827 0.8752065 prediction 0.429973911987198 Functional Loss - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43034785 chr20:43034787 nonsynonymous SNV 0.667 5 23 hm5C_associated_SNPs_85567 0 0 1 0 2 HNF4A chr20:43034698 3'AG 43034698 Downstream 90bp
chr20 43034787 43034787 1 + G T LUAD 43034785 + 43034765 43034805 41 CATCTGCGGGGACCGGGCCACGGGCAAACACTACGGTGCCT CATCTGCGGGGACCGGGCCACGTGCAAACACTACGGTGCCT < 41bp 0.714986955993599 0.348666336461947 0.89827 0.8752065 prediction 0.429973911987198 Functional Loss - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43034785 chr20:43034787 nonsynonymous SNV 0.667 5 23 hm5C_associated_SNPs_85567 0 0 1 0 2 HNF4A chr20:43034872 5'GT 43034872 Upstream 86bp
chr14 100995459 100995459 1 + G A STAD 100995456 + 100995436 100995476 41 ACCCGAGAGAGCCCGTGTTCCTGGCACAGACCAATGGCAAC ACCCGAGAGAGCCCGTGTTCCTGACACAGACCAATGGCAAC < 41bp 0.714984335271839 0.472334013858743 0.533859 0.37194836 prediction 0.429968670543678 Functional Loss - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100995456 chr14:100995459 nonsynonymous SNV 0.968 3 24 hm5C_associated_SNPs_85570 0 0 0 1 2 WDR25 chr14:100995405 3'AG 100995405 Downstream 55bp
chr14 100995459 100995459 1 + G A STAD 100995456 + 100995436 100995476 41 ACCCGAGAGAGCCCGTGTTCCTGGCACAGACCAATGGCAAC ACCCGAGAGAGCCCGTGTTCCTGACACAGACCAATGGCAAC < 41bp 0.714984335271839 0.472334013858743 0.533859 0.37194836 prediction 0.429968670543678 Functional Loss - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100995456 chr14:100995459 nonsynonymous SNV 0.968 3 24 hm5C_associated_SNPs_85570 0 0 0 1 2 WDR25 chr14:100995545 5'GT 100995545 Upstream 87bp
chr6 36020527 36020527 1 + C T BLCA 36020524 + 36020504 36020544 41 CGTGTGGCAGTGAAGAAGCTCTCCAGACCATTTCAGTCCAT CGTGTGGCAGTGAAGAAGCTCTCTAGACCATTTCAGTCCAT < 41bp 0.714983328447167 0.478635937398065 0.95288223 0.860857 prediction 0.429966656894335 Functional Loss - MAPK14 ENSG00000112062 CDS Human protein_coding chr6:36020524 chr6:36020527 synonymous SNV . 0 24 hm5C_associated_SNPs_85574 0 0 1 0 2 MAPK14 chr6:36020476 3'AG 36020476 Downstream 52bp
chr6 36020527 36020527 1 + C T BLCA 36020524 + 36020504 36020544 41 CGTGTGGCAGTGAAGAAGCTCTCCAGACCATTTCAGTCCAT CGTGTGGCAGTGAAGAAGCTCTCTAGACCATTTCAGTCCAT < 41bp 0.714983328447167 0.478635937398065 0.95288223 0.860857 prediction 0.429966656894335 Functional Loss - MAPK14 ENSG00000112062 CDS Human protein_coding chr6:36020524 chr6:36020527 synonymous SNV . 0 24 hm5C_associated_SNPs_85574 0 0 1 0 2 MAPK14 chr6:36020605 5'GT 36020605 Upstream 79bp
chr4 166231811 166231811 1 + C T COAD 166231808 + 166231788 166231828 41 CCTGTGAAGGACCAGTGGACCAGCGTTGCTAACATGAGAGA CCTGTGAAGGACCAGTGGACCAGTGTTGCTAACATGAGAGA < 41bp 0.725268486713444 0.510286083144731 0.29161114 0.29702497 prediction 0.429964807137426 Functional Loss - KLHL2 ENSG00000109466 CDS Human protein_coding chr4:166231808 chr4:166231811 synonymous SNV . 0 24 hm5C_associated_SNPs_85575 0 0 0 0 1 KLHL2 chr4:166231902 5'GT 166231902 Upstream 92bp
chrX 153668454 153668454 1 + T C OV 153668453 + 153668433 153668473 41 CCAGGATGTCATCGATTTCACTGGCCATGCCCTGGCGCTCT CCAGGATGTCATCGATTTCACCGGCCATGCCCTGGCGCTCT < 41bp 0.751224964548882 0.536244671838945 0.28802705 0.28532273 prediction 0.429960585419876 Functional Loss - GDI1 ENSG00000203879 CDS Human protein_coding chrX:153668453 chrX:153668454 synonymous SNV . 0 22 hm5C_associated_SNPs_85578 0 0 1 0 1 GDI1 chrX:153668486 5'GT 153668486 Upstream 33bp
chr2 73446039 73446039 1 + C T COAD 73446036 + 73446016 73446056 41 ATCCGGAAGGGGGAGACCATCTTCGTAGAACGGCCCCTGGT ATCCGGAAGGGGGAGACCATCTTTGTAGAACGGCCCCTGGT < 41bp 0.720776325350288 0.505797327451996 0.26773804 0.18364802 prediction 0.429957995796583 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73446036 chr2:73446039 synonymous SNV . 0 24 hm5C_associated_SNPs_85580 0 0 1 0 2 SMYD5 chr2:73445989 3'AG 73445989 Downstream 51bp
chr2 73446039 73446039 1 + C T COAD 73446036 + 73446016 73446056 41 ATCCGGAAGGGGGAGACCATCTTCGTAGAACGGCCCCTGGT ATCCGGAAGGGGGAGACCATCTTTGTAGAACGGCCCCTGGT < 41bp 0.720776325350288 0.505797327451996 0.26773804 0.18364802 prediction 0.429957995796583 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73446036 chr2:73446039 synonymous SNV . 0 24 hm5C_associated_SNPs_85580 0 0 1 0 2 SMYD5 chr2:73446097 5'GT 73446097 Upstream 59bp
chrX 48678570 48678570 1 + C T BLCA 48678568 + 48678548 48678588 41 TGATGCTGCACGGGGGGATCCGCTGGGGGGCTGCCAGGTGT TGATGCTGCACGGGGGGATCCGTTGGGGGGCTGCCAGGTGT < 41bp 0.714977552256726 0.446387414816574 0.8744372 0.8939537 prediction 0.429955104513452 Functional Loss - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48678568 chrX:48678570 synonymous SNV . 0 23 hm5C_associated_SNPs_85581 0 0 1 0 2 HDAC6 chrX:48678513 3'AG 48678513 Downstream 58bp
chrX 48678570 48678570 1 + C T BLCA 48678568 + 48678548 48678588 41 TGATGCTGCACGGGGGGATCCGCTGGGGGGCTGCCAGGTGT TGATGCTGCACGGGGGGATCCGTTGGGGGGCTGCCAGGTGT < 41bp 0.714977552256726 0.446387414816574 0.8744372 0.8939537 prediction 0.429955104513452 Functional Loss - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48678568 chrX:48678570 synonymous SNV . 0 23 hm5C_associated_SNPs_85581 0 0 1 0 2 HDAC6 chrX:48678662 5'GT 48678662 Upstream 93bp
chr16 2258788 2258788 1 + G A SKCM 2258785 + 2258765 2258805 41 TCGGACAACCTGGCCCGGCTCTGGTGTGTGGAGACTGGAGA TCGGACAACCTGGCCCGGCTCTGATGTGTGGAGACTGGAGA < 41bp 0.767121095541762 0.552146835487929 0.43319914 0.24473816 prediction 0.429948520107666 Functional Loss - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2258785 chr16:2258788 stopgain 1.000 0 24 hm5C_associated_SNPs_85584 0 0 1 2 1 MLST8 chr16:2258760 3'AG 2258760 Downstream 29bp
chr5 72873772 72873772 1 + G T STAD 72873770 + 72873750 72873790 41 GCAAAGAAGGAATCACTTCCCAGAAGAAGAAGGCCTGCATA GCAAAGAAGGAATCACTTCCCATAAGAAGAAGGCCTGCATA < 41bp 0.89752128074895 0.682548420186743 0.8489616 0.11302844 prediction 0.429945721124415 Functional Loss - UTP15 ENSG00000164338 CDS Human protein_coding chr5:72873770 chr5:72873772 nonsynonymous SNV 0.048 1 23 hm5C_associated_SNPs_85585 0 0 1 0 2 UTP15 chr5:72873681 3'AG 72873681 Downstream 92bp
chr5 72873772 72873772 1 + G T STAD 72873770 + 72873750 72873790 41 GCAAAGAAGGAATCACTTCCCAGAAGAAGAAGGCCTGCATA GCAAAGAAGGAATCACTTCCCATAAGAAGAAGGCCTGCATA < 41bp 0.89752128074895 0.682548420186743 0.8489616 0.11302844 prediction 0.429945721124415 Functional Loss - UTP15 ENSG00000164338 CDS Human protein_coding chr5:72873770 chr5:72873772 nonsynonymous SNV 0.048 1 23 hm5C_associated_SNPs_85585 0 0 1 0 2 UTP15 chr5:72873830 5'GT 72873830 Upstream 59bp
chr7 77402502 77402502 1 + G A LUSC 77402499 + 77402479 77402519 41 AAAAAATCTTCAGTACCTACCTCGAACAAGTGAGCCCCGTG AAAAAATCTTCAGTACCTACCTCAAACAAGTGAGCCCCGTG < 41bp 0.735230199764821 0.520258596094633 0.663418 0.16053572 prediction 0.429943207340376 Functional Loss - RSBN1L ENSG00000187257 CDS Human protein_coding chr7:77402499 chr7:77402502 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_85587 0 0 1 0 1 RSBN1L chr7:77402464 3'AG 77402464 Downstream 39bp
chr17 48560746 48560746 1 + G A OV 48560743 + 48560723 48560763 41 CCAGGGGGCTGGAGGCCACACCCGGGAGGCTCGGATCCAGA CCAGGGGGCTGGAGGCCACACCCAGGAGGCTCGGATCCAGA < 41bp 0.807268032022243 0.592298999486918 0.54919493 0.0462566 prediction 0.429938065070649 Functional Loss - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48560743 chr17:48560746 nonsynonymous SNV 0.758 3 24 hm5C_associated_SNPs_85589 0 0 1 1 1 RSAD1 chr17:48560701 3'AG 48560701 Downstream 46bp
chr19 13059013 13059013 1 + C T BLCA 13059011 + 13058991 13059031 41 ACCAAAGCCGGCCAGGGTACCTCAGCACCCCCAGAGGCCTC ACCAAAGCCGGCCAGGGTACCTTAGCACCCCCAGAGGCCTC < 41bp 0.714965182166821 0.449218910580723 0.32379743 0.09233698 prediction 0.429930364333642 Functional Loss - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13059011 chr19:13059013 nonsynonymous SNV 0.965 0 23 hm5C_associated_SNPs_85592 0 0 1 0 1 RAD23A chr19:13058991 3'AG 13058991 Downstream 23bp
chr1 16355714 16355714 1 + G A rs387907405 16355711 + 16355691 16355731 41 GCCCACCCTGGCCCGAGGAGCTCGACCCCCAGCACCTTTGG GCCCACCCTGGCCCGAGGAGCTCAACCCCCAGCACCTTTGG < 41bp 0.811701397533687 0.596736325470676 0.62878096 0.3685509 prediction 0.429930144126021 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16355711 chr1:16355714 nonsynonymous SNV 0.224 3 24 hm5C_associated_SNPs_85593 0 0 0 0 1 CLCNKA chr1:16355794 5'GT 16355794 Upstream 81bp
chr20 44641948 44641948 1 + C T COAD 44641946 + 44641926 44641966 41 ACCACCACCACACCGCAGCCCACGGCTCCCCCGACGGTCTG ACCACCACCACACCGCAGCCCATGGCTCCCCCGACGGTCTG < 41bp 0.796566358968824 0.581604570459529 0.20739013 0.17407668 prediction 0.429923577018591 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44641946 chr20:44641948 nonsynonymous SNV 0.122 1 23 hm5C_associated_SNPs_85594 0 0 0 0 1 MMP9 chr20:44641894 3'AG 44641894 Downstream 55bp
chr10 102732979 102732979 1 + G A HNSC 102732976 + 102732956 102732996 41 AGCAAGGCTGCTGGTGGGAGCCCGAGGTGCCCTGTTCTCTC AGCAAGGCTGCTGGTGGGAGCCCAAGGTGCCCTGTTCTCTC < 41bp 0.714961306667748 0.463894636892881 0.8537369 0.43874708 prediction 0.429922613335497 Functional Loss - SEMA4G ENSG00000095539 CDS Human protein_coding chr10:102732976 chr10:102732979 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_85595 0 0 1 0 2 SEMA4G chr10:102732886 3'AG 102732886 Downstream 94bp
chr10 102732979 102732979 1 + G A HNSC 102732976 + 102732956 102732996 41 AGCAAGGCTGCTGGTGGGAGCCCGAGGTGCCCTGTTCTCTC AGCAAGGCTGCTGGTGGGAGCCCAAGGTGCCCTGTTCTCTC < 41bp 0.714961306667748 0.463894636892881 0.8537369 0.43874708 prediction 0.429922613335497 Functional Loss - SEMA4G ENSG00000095539 CDS Human protein_coding chr10:102732976 chr10:102732979 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_85595 0 0 1 0 2 SEMA4G chr10:102733034 5'GT 102733034 Upstream 56bp
chr9 4679816 4679816 1 + G T HNSC 4679814 + 4679794 4679834 41 ACCCTGGAGCCTCCCTCGGGCCGAGGGTGAGGCTGAGGAAG ACCCTGGAGCCTCCCTCGGGCCTAGGGTGAGGCTGAGGAAG < 41bp 0.714953528748594 0.357769060278582 0.3301923 0.15804693 prediction 0.429907057497189 Functional Loss - CDC37L1 ENSG00000106993 CDS Human protein_coding chr9:4679814 chr9:4679816 stopgain 0.896 0 23 hm5C_associated_SNPs_85601 0 0 1 0 1 CDC37L1 chr9:4679899 5'GT 4679899 Upstream 84bp
chr20 23350348 23350348 1 + C T PAAD 23350345 + 23350325 23350365 41 AATGCGTGCGGACGGACATTCACCGACAAGTCCACTCTTCG AATGCGTGCGGACGGACATTCACTGACAAGTCCACTCTTCG < 41bp 0.728881281558182 0.513928587509215 0.067965925 0.08314881 prediction 0.429905388097933 Functional Loss - GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350345 chr20:23350348 synonymous SNV . 0 24 hm5C_associated_SNPs_85603 0 0 0 0 1 GZF1 chr20:23350378 5'GT 23350378 Upstream 31bp
chr8 75737719 75737719 1 + G T LUAD 75737716 + 75737696 75737736 41 TTGATTATCATAATCAAGTTCGGGGCAAAGTGTTCCCACCG TTGATTATCATAATCAAGTTCGGTGCAAAGTGTTCCCACCG < 41bp 0.71495226527629 0.339898176656757 0.93807477 0.30284584 prediction 0.429904530552579 Functional Loss - PI15 ENSG00000137558 CDS Human protein_coding chr8:75737716 chr8:75737719 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_85604 0 0 0 0 1 PI15 chr8:75737757 5'GT 75737757 Upstream 39bp
chr22 39421150 39421150 1 + A C LIHC 39421149 + 39421129 39421169 41 GGCAACCGACTGCCTGCTAACAGGCGCTTCCAGATCACCTG GGCAACCGACTGCCTGCTAACCGGCGCTTCCAGATCACCTG < 41bp 0.714949059101117 0.443655680362938 0.88933706 0.5426044 prediction 0.429898118202235 Functional Loss - APOBEC3D ENSG00000243811 CDS Human protein_coding chr22:39421149 chr22:39421150 synonymous SNV . 0 22 hm5C_associated_SNPs_85605 0 0 0 0 1 APOBEC3D chr22:39421075 3'AG 39421075 Downstream 76bp
chr11 93826783 93826783 1 + G A GBM 93826780 + 93826760 93826800 41 GGAGATCAAAGCCCGACCACCACGAGAGGAGCACTTAGAAC GGAGATCAAAGCCCGACCACCACAAGAGGAGCACTTAGAAC < 41bp 0.802843953270264 0.587895335563043 0.23634306 0.22232312 prediction 0.429897235414441 Functional Loss - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93826780 chr11:93826783 nonsynonymous SNV 0.899 1 24 hm5C_associated_SNPs_85606 0 0 0 0 1 HEPHL1 chr11:93826806 5'GT 93826806 Upstream 24bp
chr9 139818449 139818449 1 + G A GBM 139818446 + 139818426 139818466 41 CTGCTGCGGTGGCCCTTCAACCAGAAGGTGAGGCCGTCCCT CTGCTGCGGTGGCCCTTCAACCAAAAGGTGAGGCCGTCCCT < 41bp 0.714947504852352 0.462721472318293 0.52076304 0.14794266 prediction 0.429895009704705 Functional Loss - TRAF2 ENSG00000127191 CDS Human protein_coding chr9:139818446 chr9:139818449 synonymous SNV . 0 24 hm5C_associated_SNPs_85608 0 0 1 0 1 TRAF2 chr9:139818452 5'GT 139818452 Upstream 4bp
chr5 38427179 38427179 1 + G A SKCM 38427176 + 38427156 38427196 41 ACGCTGCAACTCCCTGGCCACTGGAGCCCCAGCATTACCTT ACGCTGCAACTCCCTGGCCACTGAAGCCCCAGCATTACCTT < 41bp 0.780886766240851 0.565943263856291 0.15648949 0.12795141 prediction 0.429887004769121 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38427176 chr5:38427179 nonsynonymous SNV 0.974 0 24 hm5C_associated_SNPs_85610 0 0 0 0 1 EGFLAM chr5:38427111 3'AG 38427111 Downstream 69bp
chr4 73003804 73003804 1 + G A SKCM 73003801 + 73003781 73003821 41 GCAAGATCAGTGGATTGGTCCAGGGAATATCTGTCGCAGCT GCAAGATCAGTGGATTGGTCCAGAGAATATCTGTCGCAGCT < 41bp 0.714937987225363 0.467907318064658 0.8843925 0.43016917 prediction 0.429875974450726 Functional Loss - NPFFR2 ENSG00000056291 CDS Human protein_coding chr4:73003801 chr4:73003804 nonsynonymous SNV 0.099 4 24 hm5C_associated_SNPs_85615 0 0 0 0 2 NPFFR2 chr4:73003757 3'AG 73003757 Downstream 48bp
chr4 73003804 73003804 1 + G A SKCM 73003801 + 73003781 73003821 41 GCAAGATCAGTGGATTGGTCCAGGGAATATCTGTCGCAGCT GCAAGATCAGTGGATTGGTCCAGAGAATATCTGTCGCAGCT < 41bp 0.714937987225363 0.467907318064658 0.8843925 0.43016917 prediction 0.429875974450726 Functional Loss - NPFFR2 ENSG00000056291 CDS Human protein_coding chr4:73003801 chr4:73003804 nonsynonymous SNV 0.099 4 24 hm5C_associated_SNPs_85615 0 0 0 0 2 NPFFR2 chr4:73003856 5'GT 73003856 Upstream 53bp
chr2 242149906 242149906 1 + G A rs138190598 242149903 + 242149883 242149923 41 GCCTCTCGCATCGCCAGCCTCACGGGGTCTGTAGTGAACCT GCCTCTCGCATCGCCAGCCTCACAGGGTCTGTAGTGAACCT < 41bp 0.714932790951712 0.46296007990445 0.51366913 0.17152044 prediction 0.429865581903424 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242149903 chr2:242149906 synonymous SNV . 0 24 hm5C_associated_SNPs_85616 0 0 0 0 2 ANO7 chr2:242149883 3'AG 242149883 Downstream 24bp
chr2 242149906 242149906 1 + G A rs138190598 242149903 + 242149883 242149923 41 GCCTCTCGCATCGCCAGCCTCACGGGGTCTGTAGTGAACCT GCCTCTCGCATCGCCAGCCTCACAGGGTCTGTAGTGAACCT < 41bp 0.714932790951712 0.46296007990445 0.51366913 0.17152044 prediction 0.429865581903424 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242149903 chr2:242149906 synonymous SNV . 0 24 hm5C_associated_SNPs_85616 0 0 0 0 2 ANO7 chr2:242149985 5'GT 242149985 Upstream 80bp
chr1 230891101 230891101 1 + G T UCEC 230891098 + 230891078 230891118 41 TCCAGGAAATCGTGAAAAACCCAGAATTCATTCTTGGAGGG TCCAGGAAATCGTGAAAAACCCATAATTCATTCTTGGAGGG < 41bp 0.714929479556058 0.322340466896355 0.6648663 0.33340955 prediction 0.429858959112116 Functional Loss - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230891098 chr1:230891101 stopgain 0.999 1 24 hm5C_associated_SNPs_85617 0 0 0 0 2 CAPN9 chr1:230891083 3'AG 230891083 Downstream 19bp
chr1 230891101 230891101 1 + G T UCEC 230891098 + 230891078 230891118 41 TCCAGGAAATCGTGAAAAACCCAGAATTCATTCTTGGAGGG TCCAGGAAATCGTGAAAAACCCATAATTCATTCTTGGAGGG < 41bp 0.714929479556058 0.322340466896355 0.6648663 0.33340955 prediction 0.429858959112116 Functional Loss - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230891098 chr1:230891101 stopgain 0.999 1 24 hm5C_associated_SNPs_85617 0 0 0 0 2 CAPN9 chr1:230891152 5'GT 230891152 Upstream 52bp
chr17 7915820 7915820 1 + G A COAD 7915817 + 7915797 7915837 41 GGCTCATGGGCGGCTGAAGTCACGGAACTGCATAGTGGATG GGCTCATGGGCGGCTGAAGTCACAGAACTGCATAGTGGATG < 41bp 0.797217027900065 0.582289265639329 0.87492216 0.80820584 prediction 0.429855524521471 Functional Loss - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7915817 chr17:7915820 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_85618 0 0 0 0 1 GUCY2D chr17:7915768 3'AG 7915768 Downstream 53bp
chr21 45113110 45113110 1 + C T COAD 45113108 + 45113088 45113128 41 AAGAGTATCTTGGTCAGTCCCACGGGCCCTTCTCGAGTGGC AAGAGTATCTTGGTCAGTCCCATGGGCCCTTCTCGAGTGGC < 41bp 0.714924923536566 0.441565894506514 0.10949549 0.17198688 prediction 0.429849847073132 Functional Loss - RRP1B ENSG00000160208 CDS Human protein_coding chr21:45113108 chr21:45113110 nonsynonymous SNV 0.939 1 23 hm5C_associated_SNPs_85619 0 0 1 0 1 RRP1B chr21:45113071 3'AG 45113071 Downstream 40bp
chr19 39760412 39760412 1 + G A rs555975722 39760409 + 39760389 39760429 41 GCCCACGGCAGGGCCCAGGACCCGGGGCCGCCTCCACCATT GCCCACGGCAGGGCCCAGGACCCAGGGCCGCCTCCACCATT < 41bp 0.818045316665703 0.603120761488806 0.5824996 0.10357013 prediction 0.429849110353794 Functional Loss - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39760409 chr19:39760412 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_85621 0 0 0 0 2 IFNL2 chr19:39760378 3'AG 39760378 Downstream 35bp
chr19 39760412 39760412 1 + G A rs555975722 39760409 + 39760389 39760429 41 GCCCACGGCAGGGCCCAGGACCCGGGGCCGCCTCCACCATT GCCCACGGCAGGGCCCAGGACCCAGGGCCGCCTCCACCATT < 41bp 0.818045316665703 0.603120761488806 0.5824996 0.10357013 prediction 0.429849110353794 Functional Loss - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39760409 chr19:39760412 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_85621 0 0 0 0 2 IFNL2 chr19:39760461 5'GT 39760461 Upstream 50bp
chr8 49985427 49985427 1 + G A SARC 49985424 + 49985404 49985444 41 TTCCATTGGTTGCCTTCTAGCCAGAAATCAGTATTATCGAA TTCCATTGGTTGCCTTCTAGCCAAAAATCAGTATTATCGAA < 41bp 0.71491539934063 0.485715286769602 0.8573191 0.5190982 prediction 0.429830798681259 Functional Loss - C8orf22 ENSG00000168333 CDS Human protein_coding chr8:49985424 chr8:49985427 nonsynonymous SNV 0.904 0 24 hm5C_associated_SNPs_85627 0 0 0 0 2 C8orf22 chr8:49985346 3'AG 49985346 Downstream 82bp
chr8 49985427 49985427 1 + G A SARC 49985424 + 49985404 49985444 41 TTCCATTGGTTGCCTTCTAGCCAGAAATCAGTATTATCGAA TTCCATTGGTTGCCTTCTAGCCAAAAATCAGTATTATCGAA < 41bp 0.71491539934063 0.485715286769602 0.8573191 0.5190982 prediction 0.429830798681259 Functional Loss - C8orf22 ENSG00000168333 CDS Human protein_coding chr8:49985424 chr8:49985427 nonsynonymous SNV 0.904 0 24 hm5C_associated_SNPs_85627 0 0 0 0 2 C8orf22 chr8:49985444 5'GT 49985444 Upstream 18bp
chr15 89392722 89392722 1 + G A SKCM 89392719 + 89392699 89392739 41 AGTTCACCTTCCAGGAAGCACTGGAGTTCTGTGAATCTCAC AGTTCACCTTCCAGGAAGCACTGAAGTTCTGTGAATCTCAC < 41bp 0.787880630940563 0.572966982525777 0.11331734 0.10163435 prediction 0.42982729682957 Functional Loss - ACAN ENSG00000157766 CDS Human protein_coding chr15:89392719 chr15:89392722 nonsynonymous SNV 0.256 0 24 hm5C_associated_SNPs_85628 0 0 0 0 1 ACAN chr15:89392669 3'AG 89392669 Downstream 54bp
chr1 170940962 170940962 1 + C T LUSC 170940960 + 170940940 170940980 41 TTGTGTTCCCATGAAGATCCCTCGATTGTAAAACAAGCATC TTGTGTTCCCATGAAGATCCCTTGATTGTAAAACAAGCATC < 41bp 0.859886745517882 0.644975252647726 0.29740053 0.0658384 prediction 0.429822985740313 Functional Loss - MROH9 ENSG00000117501 CDS Human protein_coding chr1:170940960 chr1:170940962 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_85629 0 0 0 0 3 MROH9 chr1:170940889 3'AG 170940889 Downstream 74bp
chr1 170940962 170940962 1 + C T LUSC 170940960 + 170940940 170940980 41 TTGTGTTCCCATGAAGATCCCTCGATTGTAAAACAAGCATC TTGTGTTCCCATGAAGATCCCTTGATTGTAAAACAAGCATC < 41bp 0.859886745517882 0.644975252647726 0.29740053 0.0658384 prediction 0.429822985740313 Functional Loss - MROH9 ENSG00000117501 CDS Human protein_coding chr1:170940960 chr1:170940962 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_85629 0 0 0 0 3 MROH9 chr1:170940894 3'AG 170940894 Downstream 69bp
chr1 170940962 170940962 1 + C T LUSC 170940960 + 170940940 170940980 41 TTGTGTTCCCATGAAGATCCCTCGATTGTAAAACAAGCATC TTGTGTTCCCATGAAGATCCCTTGATTGTAAAACAAGCATC < 41bp 0.859886745517882 0.644975252647726 0.29740053 0.0658384 prediction 0.429822985740313 Functional Loss - MROH9 ENSG00000117501 CDS Human protein_coding chr1:170940960 chr1:170940962 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_85629 0 0 0 0 3 MROH9 chr1:170941024 5'GT 170941024 Upstream 63bp
chr16 2577777 2577777 1 + T C LUSC 2577776 + 2577756 2577796 41 CTTGCTCCCTCCTCCCAGGGCTGCACCTGGAGGGCCCCTTC CTTGCTCCCTCCTCCCAGGGCCGCACCTGGAGGGCCCCTTC < 41bp 0.805159238829874 0.590248049044622 0.2834053 0.2391778 prediction 0.429822379570504 Functional Loss - AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2577776 chr16:2577777 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_85631 0 0 1 0 1 AMDHD2 chr16:2577774 3'AG 2577774 Downstream 4bp
chr14 57747065 57747065 1 + T C rs373873973 57747064 + 57747044 57747084 41 TATTGATGCAATGGATGACTCTGCATTTAGTGGGCCTTACA TATTGATGCAATGGATGACTCCGCATTTAGTGGGCCTTACA < 41bp 0.828506179630794 0.613598888324789 0.1774776 0.13418207 prediction 0.429814582612011 Functional Loss - AP5M1 ENSG00000053770 CDS Human protein_coding chr14:57747064 chr14:57747065 synonymous SNV . 0 22 hm5C_associated_SNPs_85634 0 0 1 0 1 AP5M1 chr14:57747140 5'GT 57747140 Upstream 76bp
chr11 18290819 18290819 1 + C T CESC 18290817 + 18290797 18290837 41 CTCAGACAAATACTTCCATGCTCGGGGGAACTATGATGCTG CTCAGACAAATACTTCCATGCTTGGGGGAACTATGATGCTG < 41bp 0.855313128904408 0.640416428823869 0.0664981 0.064739645 prediction 0.429793400161078 Functional Loss - SAA1 ENSG00000173432 CDS Human protein_coding chr11:18290817 chr11:18290819 nonsynonymous SNV 0.992 3 23 hm5C_associated_SNPs_85639 0 0 0 2 2 SAA1 chr11:18290742 3'AG 18290742 Downstream 78bp
chr11 18290819 18290819 1 + C T CESC 18290817 + 18290797 18290837 41 CTCAGACAAATACTTCCATGCTCGGGGGAACTATGATGCTG CTCAGACAAATACTTCCATGCTTGGGGGAACTATGATGCTG < 41bp 0.855313128904408 0.640416428823869 0.0664981 0.064739645 prediction 0.429793400161078 Functional Loss - SAA1 ENSG00000173432 CDS Human protein_coding chr11:18290817 chr11:18290819 nonsynonymous SNV 0.992 3 23 hm5C_associated_SNPs_85639 0 0 0 2 2 SAA1 chr11:18290880 5'GT 18290880 Upstream 62bp
chr4 146601490 146601490 1 + G A SKCM 146601487 + 146601467 146601507 41 ACACGATGGTCAGATTCTTCCGTGACAACATACACAGGCAG ACACGATGGTCAGATTCTTCCGTAACAACATACACAGGCAG < 41bp 0.789774060980011 0.574880986918247 0.88466096 0.41573766 prediction 0.429786148123529 Functional Loss - C4orf51 ENSG00000237136 CDS Human protein_coding chr4:146601487 chr4:146601490 synonymous SNV . 0 24 hm5C_associated_SNPs_85642 0 0 0 0 1 C4orf51 chr4:146601588 5'GT 146601588 Upstream 99bp
chr22 32464586 32464586 1 + C T STAD 32464584 + 32464564 32464604 41 CTCTACATTTTCACCAAGATCTCGGTGAGTCCACTGCCCCA CTCTACATTTTCACCAAGATCTTGGTGAGTCCACTGCCCCA < 41bp 0.832670233501378 0.617778703095941 0.36507517 0.5230422 prediction 0.429783060810875 Functional Loss - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32464584 chr22:32464586 nonsynonymous SNV 0.978 3 23 hm5C_associated_SNPs_85645 0 0 0 0 1 SLC5A1 chr22:32464587 5'GT 32464587 Upstream 2bp
chrX 99925879 99925879 1 + C T rs138091242 99925876 + 99925856 99925896 41 CAGGGTATTGACCGAGACCGCTACATGGAACCTGTCACCCC CAGGGTATTGACCGAGACCGCTATATGGAACCTGTCACCCC < 41bp 0.751388771140221 0.536499560586913 0.31632298 0.27754188 prediction 0.429778421106616 Functional Loss - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99925876 chrX:99925879 synonymous SNV . 0 24 hm5C_associated_SNPs_85648 2 0 0 0 1 SRPX2 chrX:99925804 3'AG 99925804 Downstream 76bp
chr11 43469611 43469611 1 + C T CESC 43469608 + 43469588 43469628 41 GCCCGGACGAATGCCTCAAACTCCGCTGGGTAGAGCTGACT GCCCGGACGAATGCCTCAAACTCTGCTGGGTAGAGCTGACT < 41bp 0.714880456289964 0.477225737569829 0.20687604 0.14252606 prediction 0.429760912579928 Functional Loss - TTC17 ENSG00000052841 CDS Human protein_coding chr11:43469608 chr11:43469611 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_85652 0 0 1 0 2 TTC17 chr11:43469552 3'AG 43469552 Downstream 60bp
chr11 43469611 43469611 1 + C T CESC 43469608 + 43469588 43469628 41 GCCCGGACGAATGCCTCAAACTCCGCTGGGTAGAGCTGACT GCCCGGACGAATGCCTCAAACTCTGCTGGGTAGAGCTGACT < 41bp 0.714880456289964 0.477225737569829 0.20687604 0.14252606 prediction 0.429760912579928 Functional Loss - TTC17 ENSG00000052841 CDS Human protein_coding chr11:43469608 chr11:43469611 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_85652 0 0 1 0 2 TTC17 chr11:43469672 5'GT 43469672 Upstream 62bp
chr11 43469610 43469610 1 + C T UCEC 43469608 + 43469588 43469628 41 GCCCGGACGAATGCCTCAAACTCCGCTGGGTAGAGCTGACT GCCCGGACGAATGCCTCAAACTTCGCTGGGTAGAGCTGACT < 41bp 0.714880456289964 0.414345059740248 0.20687604 0.18739316 prediction 0.429760912579928 Functional Loss - TTC17 ENSG00000052841 CDS Human protein_coding chr11:43469608 chr11:43469610 synonymous SNV . 0 23 hm5C_associated_SNPs_85653 0 0 1 0 2 TTC17 chr11:43469552 3'AG 43469552 Downstream 59bp
chr11 43469610 43469610 1 + C T UCEC 43469608 + 43469588 43469628 41 GCCCGGACGAATGCCTCAAACTCCGCTGGGTAGAGCTGACT GCCCGGACGAATGCCTCAAACTTCGCTGGGTAGAGCTGACT < 41bp 0.714880456289964 0.414345059740248 0.20687604 0.18739316 prediction 0.429760912579928 Functional Loss - TTC17 ENSG00000052841 CDS Human protein_coding chr11:43469608 chr11:43469610 synonymous SNV . 0 23 hm5C_associated_SNPs_85653 0 0 1 0 2 TTC17 chr11:43469672 5'GT 43469672 Upstream 63bp
chr19 50906837 50906837 1 + C T CESC 50906835 + 50906815 50906855 41 CGACCTTCCGTACCTCATCTCTCGGGCCCAGACCCTCAAGG CGACCTTCCGTACCTCATCTCTTGGGCCCAGACCCTCAAGG < 41bp 0.714873254918336 0.442988883786184 0.2548725 0.2163608 prediction 0.429746509836672 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906835 chr19:50906837 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_85657 0 0 1 0 2 POLD1 chr19:50906750 3'AG 50906750 Downstream 88bp
chr19 50906837 50906837 1 + C T CESC 50906835 + 50906815 50906855 41 CGACCTTCCGTACCTCATCTCTCGGGCCCAGACCCTCAAGG CGACCTTCCGTACCTCATCTCTTGGGCCCAGACCCTCAAGG < 41bp 0.714873254918336 0.442988883786184 0.2548725 0.2163608 prediction 0.429746509836672 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906835 chr19:50906837 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_85657 0 0 1 0 2 POLD1 chr19:50906854 5'GT 50906854 Upstream 18bp
chr18 77107846 77107846 1 + A C LUAD 77107845 + 77107825 77107865 41 TAGGCAGGCTGCTCATGGTGCACGGGCGGAACAGCTACAAG TAGGCAGGCTGCTCATGGTGCCCGGGCGGAACAGCTACAAG < 41bp 0.714873173931796 0.471123395548285 0.05134198 0.048315078 prediction 0.429746347863593 Functional Loss - ATP9B ENSG00000166377 CDS Human protein_coding chr18:77107845 chr18:77107846 nonsynonymous SNV 0.892 4 22 hm5C_associated_SNPs_85658 0 0 1 0 1 ATP9B chr18:77107925 5'GT 77107925 Upstream 80bp
chr18 77107848 77107848 1 + G A STAD 77107845 + 77107825 77107865 41 TAGGCAGGCTGCTCATGGTGCACGGGCGGAACAGCTACAAG TAGGCAGGCTGCTCATGGTGCACAGGCGGAACAGCTACAAG < 41bp 0.714873173931796 0.476619887224465 0.05134198 0.027995884 prediction 0.429746347863593 Functional Loss - ATP9B ENSG00000166377 CDS Human protein_coding chr18:77107845 chr18:77107848 nonsynonymous SNV 0.792 5 24 hm5C_associated_SNPs_85659 0 0 0 0 1 ATP9B chr18:77107925 5'GT 77107925 Upstream 78bp
chr18 77107847 77107847 1 + C T STAD 77107845 + 77107825 77107865 41 TAGGCAGGCTGCTCATGGTGCACGGGCGGAACAGCTACAAG TAGGCAGGCTGCTCATGGTGCATGGGCGGAACAGCTACAAG < 41bp 0.714873173931796 0.452119435822348 0.05134198 0.087445974 prediction 0.429746347863593 Functional Loss - ATP9B ENSG00000166377 CDS Human protein_coding chr18:77107845 chr18:77107847 synonymous SNV . 0 23 hm5C_associated_SNPs_85660 0 0 0 0 1 ATP9B chr18:77107925 5'GT 77107925 Upstream 79bp
chr9 136259533 136259533 1 + G A SKCM 136259530 + 136259510 136259550 41 GACATGACCAGCTGCTCCTTCATGGATGTGAGCCGCCCTCC GACATGACCAGCTGCTCCTTCATAGATGTGAGCCGCCCTCC < 41bp 0.714871909323233 0.456098587575333 0.6776428 0.414743 prediction 0.429743818646465 Functional Loss - STKLD1 ENSG00000198870 CDS Human protein_coding chr9:136259530 chr9:136259533 nonsynonymous SNV 0.262 0 24 hm5C_associated_SNPs_85662 0 0 0 0 1 STKLD1 chr9:136259536 5'GT 136259536 Upstream 4bp
chr2 98928408 98928408 1 + C T SKCM 98928406 + 98928386 98928426 41 AGAGGCCCGCCAAGCAGCCACTCCAGCAGGCGGCGCCCTCG AGAGGCCCGCCAAGCAGCCACTTCAGCAGGCGGCGCCCTCG < 41bp 0.805409650768916 0.590537859642629 0.95495427 0.18634778 prediction 0.429743582252576 Functional Loss - VWA3B ENSG00000168658 CDS Human protein_coding chr2:98928406 chr2:98928408 synonymous SNV . 0 23 hm5C_associated_SNPs_85663 0 0 0 0 1 VWA3B chr2:98928464 5'GT 98928464 Upstream 57bp
chr3 37512625 37512625 1 + G T UCEC 37512622 + 37512602 37512642 41 GCACCGAACTGGACATGGCTCGAGGTGGGTGACCATTACTG GCACCGAACTGGACATGGCTCGATGTGGGTGACCATTACTG < 41bp 0.714870990941831 0.32797047217027 0.9081733 0.560765 prediction 0.429741981883661 Functional Loss - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37512622 chr3:37512625 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_85665 0 0 0 0 1 ITGA9 chr3:37512625 5'GT 37512625 Upstream 1bp
chr14 51352582 51352582 1 + G A UCEC 51352579 + 51352559 51352599 41 AGGCAAGAAGTGGCATCACTCCCGTGTGTCTCTGGGGCCAC AGGCAAGAAGTGGCATCACTCCCATGTGTCTCTGGGGCCAC < 41bp 0.803360388358324 0.588491019474592 0.40465343 0.16750115 prediction 0.429738737767463 Functional Loss - ABHD12B ENSG00000131969 CDS Human protein_coding chr14:51352579 chr14:51352582 nonsynonymous SNV 0.767 4 24 hm5C_associated_SNPs_85666 0 0 0 0 1 ABHD12B chr14:51352484 3'AG 51352484 Downstream 99bp
chr2 36994355 36994355 1 + G T UCEC 36994351 + 36994331 36994371 41 GGCCACCCCCACCACCTTGCCAAGGCCATCCCCTTCTGCTG GGCCACCCCCACCACCTTGCCAAGTCCATCCCCTTCTGCTG < 41bp 0.742528642258767 0.527659568165564 0.9007929 0.628572 prediction 0.429738148186405 Functional Loss - VIT ENSG00000205221 CDS Human protein_coding chr2:36994351 chr2:36994355 nonsynonymous SNV 0.684 1 25 hm5C_associated_SNPs_85667 0 0 0 0 1 VIT chr2:36994428 5'GT 36994428 Upstream 74bp
chr16 1547477 1547477 1 + T C rs2745108 1547476 + 1547456 1547496 41 GCCGGACCGGGCCATGGAGGCTGTGCTGACCGGGCTGGTGG GCCGGACCGGGCCATGGAGGCCGTGCTGACCGGGCTGGTGG < 41bp 0.714867246892543 0.480320659054944 0.24686816 0.25791377 prediction 0.429734493785087 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1547476 chr16:1547477 synonymous SNV . 0 22 hm5C_associated_SNPs_85668 0 0 1 0 1 TELO2 chr16:1547509 5'GT 1547509 Upstream 33bp
chr15 90997667 90997667 1 + G A UCEC 90997664 + 90997644 90997684 41 TGGGGGTCTGGGGCAGGTATCTCGATGAGTTGATGAAACTG TGGGGGTCTGGGGCAGGTATCTCAATGAGTTGATGAAACTG < 41bp 0.792002282094955 0.577140463876828 0.90230995 0.8718692 prediction 0.429723636436253 Functional Loss - IQGAP1 ENSG00000140575 CDS Human protein_coding chr15:90997664 chr15:90997667 nonsynonymous SNV 0.983 1 24 hm5C_associated_SNPs_85673 0 0 1 0 1 IQGAP1 chr15:90997660 3'AG 90997660 Downstream 8bp
chr2 173333910 173333910 1 + G A UCEC 173333907 + 173333887 173333927 41 TTAATACGAAGCAGGAATCCCGAGACATCTTTGGGCGGTGT TTAATACGAAGCAGGAATCCCGAAACATCTTTGGGCGGTGT < 41bp 0.770835797334434 0.555974172816368 0.79049116 0.29342592 prediction 0.429723249036133 Functional Loss - ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173333907 chr2:173333910 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_85674 0 0 1 0 1 ITGA6 chr2:173333853 3'AG 173333853 Downstream 58bp
chr19 6829860 6829860 1 + C T BLCA 6829858 + 6829838 6829878 41 GCAGGGGAGACTCCTATGACCTCAAGGACTTTGTAAACCTG GCAGGGGAGACTCCTATGACCTTAAGGACTTTGTAAACCTG < 41bp 0.714857505603235 0.416617368373271 0.05748725 0.033319414 prediction 0.429715011206471 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6829858 chr19:6829860 synonymous SNV . 0 23 hm5C_associated_SNPs_85676 0 0 0 0 2 VAV1 chr19:6829797 3'AG 6829797 Downstream 64bp
chr19 6829860 6829860 1 + C T BLCA 6829858 + 6829838 6829878 41 GCAGGGGAGACTCCTATGACCTCAAGGACTTTGTAAACCTG GCAGGGGAGACTCCTATGACCTTAAGGACTTTGTAAACCTG < 41bp 0.714857505603235 0.416617368373271 0.05748725 0.033319414 prediction 0.429715011206471 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6829858 chr19:6829860 synonymous SNV . 0 23 hm5C_associated_SNPs_85676 0 0 0 0 2 VAV1 chr19:6829929 5'GT 6829929 Upstream 70bp
chr9 139231939 139231939 1 + C T UCEC 139231936 + 139231916 139231956 41 GAAGGAGCTGGGCGACCGTGCGGCGCAGGGCAGGGCCTACG GAAGGAGCTGGGCGACCGTGCGGTGCAGGGCAGGGCCTACG < 41bp 0.725562855869701 0.510708003576807 0.65558887 0.44749382 prediction 0.429709704585788 Functional Loss - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139231936 chr9:139231939 nonsynonymous SNV 0.837 3 24 hm5C_associated_SNPs_85680 0 0 0 0 2 GPSM1 chr9:139231898 3'AG 139231898 Downstream 42bp
chr9 139231939 139231939 1 + C T UCEC 139231936 + 139231916 139231956 41 GAAGGAGCTGGGCGACCGTGCGGCGCAGGGCAGGGCCTACG GAAGGAGCTGGGCGACCGTGCGGTGCAGGGCAGGGCCTACG < 41bp 0.725562855869701 0.510708003576807 0.65558887 0.44749382 prediction 0.429709704585788 Functional Loss - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139231936 chr9:139231939 nonsynonymous SNV 0.837 3 24 hm5C_associated_SNPs_85680 0 0 0 0 2 GPSM1 chr9:139232021 5'GT 139232021 Upstream 83bp
chr20 47611012 47611012 1 + G A CESC 47611009 + 47610989 47611029 41 TCTTGAAATGCATCAGCCAGCTGGAGCTCGCTCAGCTGATA TCTTGAAATGCATCAGCCAGCTGAAGCTCGCTCAGCTGATA < 41bp 0.714854785826941 0.488084352553147 0.3924089 0.34604388 prediction 0.429709571653881 Functional Loss - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47611009 chr20:47611012 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_85681 0 0 1 0 1 ARFGEF2 chr20:47610988 3'AG 47610988 Downstream 25bp
chr17 42824480 42824480 1 + G A SKCM 42824477 + 42824457 42824497 41 CAAGGATGGAGAGCCAAGCCCACGATCAGCTGCCCACACCA CAAGGATGGAGAGCCAAGCCCACAATCAGCTGCCCACACCA < 41bp 0.829191705816139 0.614337146575208 0.24602368 0.036713004 prediction 0.429709118481861 Functional Loss - DBF4B ENSG00000161692 CDS Human protein_coding chr17:42824477 chr17:42824480 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_85682 0 0 1 0 2 DBF4B chr17:42824451 3'AG 42824451 Downstream 30bp
chr17 42824480 42824480 1 + G A SKCM 42824477 + 42824457 42824497 41 CAAGGATGGAGAGCCAAGCCCACGATCAGCTGCCCACACCA CAAGGATGGAGAGCCAAGCCCACAATCAGCTGCCCACACCA < 41bp 0.829191705816139 0.614337146575208 0.24602368 0.036713004 prediction 0.429709118481861 Functional Loss - DBF4B ENSG00000161692 CDS Human protein_coding chr17:42824477 chr17:42824480 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_85682 0 0 1 0 2 DBF4B chr17:42824559 5'GT 42824559 Upstream 80bp
chr17 34842620 34842620 1 + G C BLCA 34842619 + 34842599 34842639 41 AATACCGCTGTCCAGCCTGCCGCGTGCCCTAGTGAGCGGGG AATACCGCTGTCCAGCCTGCCCCGTGCCCTAGTGAGCGGGG < 41bp 0.714854197564981 0.406119714223628 0.17753467 0.0476048 prediction 0.429708395129963 Functional Loss - ZNHIT3 ENSG00000108278 CDS Human other chr17:34842619 chr17:34842620 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_85683 0 0 1 0 1 ZNHIT3 chr17:34842629 5'GT 34842629 Upstream 10bp
chr11 70265949 70265949 1 + C T CESC 70265947 + 70265927 70265967 41 ATCAAGGCAAAACGGAGAAGCACGAGTCCCAGAAAGGTGTC ATCAAGGCAAAACGGAGAAGCATGAGTCCCAGAAAGGTGTC < 41bp 0.853611375902402 0.638757819122527 0.22674692 0.18429106 prediction 0.429707113559748 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70265947 chr11:70265949 synonymous SNV . 0 23 hm5C_associated_SNPs_85684 0 0 1 0 2 CTTN chr11:70265852 3'AG 70265852 Downstream 98bp
chr11 70265949 70265949 1 + C T CESC 70265947 + 70265927 70265967 41 ATCAAGGCAAAACGGAGAAGCACGAGTCCCAGAAAGGTGTC ATCAAGGCAAAACGGAGAAGCATGAGTCCCAGAAAGGTGTC < 41bp 0.853611375902402 0.638757819122527 0.22674692 0.18429106 prediction 0.429707113559748 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70265947 chr11:70265949 synonymous SNV . 0 23 hm5C_associated_SNPs_85684 0 0 1 0 2 CTTN chr11:70265962 5'GT 70265962 Upstream 14bp
chr19 50386085 50386085 1 + G A HNSC 50386082 + 50386062 50386102 41 AGTTACAGAGGAGGAGTGGGCACGCCACGTGGGCCCTGAAG AGTTACAGAGGAGGAGTGGGCACACCACGTGGGCCCTGAAG < 41bp 0.714848393784745 0.460127355419853 0.41927642 0.176211 prediction 0.42969678756949 Functional Loss - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50386082 chr19:50386085 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_85688 0 0 1 0 2 TBC1D17 chr19:50386021 3'AG 50386021 Downstream 65bp
chr19 50386085 50386085 1 + G A HNSC 50386082 + 50386062 50386102 41 AGTTACAGAGGAGGAGTGGGCACGCCACGTGGGCCCTGAAG AGTTACAGAGGAGGAGTGGGCACACCACGTGGGCCCTGAAG < 41bp 0.714848393784745 0.460127355419853 0.41927642 0.176211 prediction 0.42969678756949 Functional Loss - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50386082 chr19:50386085 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_85688 0 0 1 0 2 TBC1D17 chr19:50386149 5'GT 50386149 Upstream 65bp
chr4 113333030 113333030 1 + G T LUAD 113333026 + 113333006 113333046 41 CGCTCGGGACTGTGCGGCTGCGGCGGCTATTGTGTTCTTGG CGCTCGGGACTGTGCGGCTGCGGCTGCTATTGTGTTCTTGG < 41bp 0.716307061272881 0.501461360615765 0.86708474 0.4362297 prediction 0.429691401314232 Functional Loss - ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113333026 chr4:113333030 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_85690 0 0 0 0 1 ALPK1 chr4:113332983 3'AG 113332983 Downstream 48bp
chr21 47320928 47320928 1 + C T UCEC 47320925 + 47320905 47320945 41 CCTTAGAGTGGTGCAAGGATCAACATCTCAGAGGGAAACTG CCTTAGAGTGGTGCAAGGATCAATATCTCAGAGGGAAACTG < 41bp 0.731481686121893 0.516640821216169 0.07077977 0.06680316 prediction 0.429681729811449 Functional Loss - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47320925 chr21:47320928 synonymous SNV . 0 24 hm5C_associated_SNPs_85693 0 0 0 0 1 PCBP3 chr21:47321027 5'GT 47321027 Upstream 100bp
chr20 33589837 33589837 1 + A T GBM 33589833 + 33589813 33589853 41 GGAGGAGCGGGCAGACATGGCGGAAACCCAGGCCAACAAGC GGAGGAGCGGGCAGACATGGCGGATACCCAGGCCAACAAGC < 41bp 0.714839426448723 0.398387346679445 0.8803625 0.6789786 prediction 0.429678852897446 Functional Loss - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33589833 chr20:33589837 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_85695 0 0 0 0 2 MYH7B chr20:33589751 3'AG 33589751 Downstream 87bp
chr20 33589837 33589837 1 + A T GBM 33589833 + 33589813 33589853 41 GGAGGAGCGGGCAGACATGGCGGAAACCCAGGCCAACAAGC GGAGGAGCGGGCAGACATGGCGGATACCCAGGCCAACAAGC < 41bp 0.714839426448723 0.398387346679445 0.8803625 0.6789786 prediction 0.429678852897446 Functional Loss - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33589833 chr20:33589837 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_85695 0 0 0 0 2 MYH7B chr20:33589888 5'GT 33589888 Upstream 52bp
chr5 52235472 52235472 1 + G A SKCM 52235469 + 52235449 52235489 41 GGATCCTTTCAGTATCAACTCTGGAAAGAAAATGACTACAT GGATCCTTTCAGTATCAACTCTGAAAAGAAAATGACTACAT < 41bp 0.763865265002179 0.549027060207043 0.08227146 0.032813042 prediction 0.429676409590271 Functional Loss - ITGA1 ENSG00000213949 CDS Human protein_coding chr5:52235469 chr5:52235472 nonsynonymous SNV 0.974 0 24 hm5C_associated_SNPs_85696 0 0 1 0 2 ITGA1 chr5:52235420 3'AG 52235420 Downstream 53bp
chr5 52235472 52235472 1 + G A SKCM 52235469 + 52235449 52235489 41 GGATCCTTTCAGTATCAACTCTGGAAAGAAAATGACTACAT GGATCCTTTCAGTATCAACTCTGAAAAGAAAATGACTACAT < 41bp 0.763865265002179 0.549027060207043 0.08227146 0.032813042 prediction 0.429676409590271 Functional Loss - ITGA1 ENSG00000213949 CDS Human protein_coding chr5:52235469 chr5:52235472 nonsynonymous SNV 0.974 0 24 hm5C_associated_SNPs_85696 0 0 1 0 2 ITGA1 chr5:52235521 5'GT 52235521 Upstream 50bp
chr16 857526 857526 1 + G A rs115563873 857523 + 857503 857543 41 GATATGGCCAAACACCCGGGCGCGAGCCCCGCGTGCAGGCG GATATGGCCAAACACCCGGGCGCAAGCCCCGCGTGCAGGCG < 41bp 0.793881674927724 0.579045707686435 0.3068622 0.12748566 prediction 0.429671934482577 Functional Loss - PRR25 ENSG00000167945 CDS Human protein_coding chr16:857523 chr16:857526 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_85700 0 0 0 0 1 PRR25 chr16:857472 3'AG 857472 Downstream 55bp
chr20 47592558 47592558 1 + G A BLCA 47592555 + 47592535 47592575 41 ACTTTTGTTTCTCCGCAGGTCAGGAGAGGCTCACGGATCAG ACTTTTGTTTCTCCGCAGGTCAGAAGAGGCTCACGGATCAG < 41bp 0.790506334939372 0.575671861204295 0.8810434 0.6748496 prediction 0.429668947470153 Functional Loss - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47592555 chr20:47592558 nonsynonymous SNV 0.985 1 24 hm5C_associated_SNPs_85702 0 0 1 0 1 ARFGEF2 chr20:47592553 3'AG 47592553 Downstream 6bp
chr12 57963919 57963919 1 + C T ESCA 57963916 + 57963896 57963936 41 AGAAATACGAGGAGGAGATCCGCCGTCTCTATAAGCAGCTT AGAAATACGAGGAGGAGATCCGCTGTCTCTATAAGCAGCTT < 41bp 0.729034007083454 0.514202046310558 0.81702507 0.8879386 prediction 0.429663921545793 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57963916 chr12:57963919 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_85706 0 0 1 0 1 KIF5A chr12:57963945 5'GT 57963945 Upstream 27bp
chr9 2719094 2719094 1 + C T GBM 2719092 + 2719072 2719112 41 CCCCACTCCTGGTGGTGGGCCGCGGTGAGTACCTTTGCCCT CCCCACTCCTGGTGGTGGGCCGTGGTGAGTACCTTTGCCCT < 41bp 0.776983008565356 0.562153194616317 0.785326 0.64947796 prediction 0.429659627898079 Functional Loss - KCNV2 ENSG00000168263 CDS Human protein_coding chr9:2719092 chr9:2719094 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_85708 0 0 0 0 1 KCNV2 chr9:2719095 5'GT 2719095 Upstream 2bp
chr1 52211221 52211221 1 + G T COAD 52211218 + 52211198 52211238 41 CTTTCTCTAGGGTTTGGATTCAGGATTTGTTCCTAGTGTCC CTTTCTCTAGGGTTTGGATTCAGTATTTGTTCCTAGTGTCC < 41bp 0.714826923173398 0.349366765480784 0.42455298 0.10477567 prediction 0.429653846346795 Functional Loss - OSBPL9 ENSG00000117859 CDS Human protein_coding chr1:52211218 chr1:52211221 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_85709 0 0 1 1 1 OSBPL9 chr1:52211303 5'GT 52211303 Upstream 83bp
chr7 43591831 43591831 1 + C T GBM 43591829 + 43591809 43591849 41 CCTGCATTTCAGGTTGTAGACTCGAGGCTGGTGTCCGTGTT CCTGCATTTCAGGTTGTAGACTTGAGGCTGGTGTCCGTGTT < 41bp 0.714823796186113 0.424738336398026 0.7981436 0.29508173 prediction 0.429647592372226 Functional Loss - HECW1 ENSG00000002746 CDS Human protein_coding chr7:43591829 chr7:43591831 nonsynonymous SNV 0.964 2 23 hm5C_associated_SNPs_85710 0 0 0 0 1 HECW1 chr7:43591821 3'AG 43591821 Downstream 11bp
chr19 15752225 15752225 1 + G A SKCM 15752222 + 15752202 15752242 41 TCACCACCCCATCTGCCCTGCAGGATGCCACAGCTGAGCCT TCACCACCCCATCTGCCCTGCAGAATGCCACAGCTGAGCCT < 41bp 0.77696010946369 0.56213800464023 0.32608205 0.2039282 prediction 0.42964420964692 Functional Loss - CYP4F3 ENSG00000186529 UTR5 Human protein_coding chr19:15752222 chr19:15752225 . . 0 24 hm5C_associated_SNPs_85713 0 0 1 0 1 CYP4F3 chr19:15752225 3'AG 15752225 Downstream 1bp
chr15 44038774 44038774 1 - G A LGG 44038776 - 44038756 44038796 41 CGGGCCGCGGCAAGAAGCAGCGCCACACCCGGGAACAGCGC CGGGCCGCGGCAAGAAGCAGCGTCACACCCGGGAACAGCGC < 41bp 0.798581820067313 0.583762183257214 0.29117733 0.19616744 prediction 0.429639273620198 Functional Loss - PDIA3 ENSG00000167004 CDS Human transcribed_unprocessed_pseudogene chr15:44038776 chr15:44038774 nonsynonymous SNV 0.085 0 23 hm5C_associated_SNPs_85716 0 0 0 0 1 PDIA3 chr15:44038729 5'GT 44038729 Upstream 46bp
chr10 99358900 99358900 1 + C T COAD 99358898 + 99358878 99358918 41 ATGGCCCAGGTCGGGGCTGACGCGGCCATGGTGGTGACCCC ATGGCCCAGGTCGGGGCTGACGTGGCCATGGTGGTGACCCC < 41bp 0.822194054643853 0.607376200300323 0.89147353 0.7851759 prediction 0.42963570868706 Functional Loss - HOGA1 ENSG00000241935 CDS Human protein_coding chr10:99358898 chr10:99358900 nonsynonymous SNV 0.312 1 23 hm5C_associated_SNPs_85719 0 0 0 0 2 HOGA1 chr10:99358846 3'AG 99358846 Downstream 55bp
chr10 99358900 99358900 1 + C T COAD 99358898 + 99358878 99358918 41 ATGGCCCAGGTCGGGGCTGACGCGGCCATGGTGGTGACCCC ATGGCCCAGGTCGGGGCTGACGTGGCCATGGTGGTGACCCC < 41bp 0.822194054643853 0.607376200300323 0.89147353 0.7851759 prediction 0.42963570868706 Functional Loss - HOGA1 ENSG00000241935 CDS Human protein_coding chr10:99358898 chr10:99358900 nonsynonymous SNV 0.312 1 23 hm5C_associated_SNPs_85719 0 0 0 0 2 HOGA1 chr10:99358973 5'GT 99358973 Upstream 74bp
chr7 47694925 47694925 1 + G T ESCA 47694922 + 47694902 47694942 41 CAGAAGGAAGACGGCTCTGGCCGGGCCCCAGGGAGGGAGGC CAGAAGGAAGACGGCTCTGGCCGTGCCCCAGGGAGGGAGGC < 41bp 0.714817013972903 0.32459899421185 0.7563599 0.15958318 prediction 0.429634027945806 Functional Loss - C7orf65 ENSG00000221845 CDS Human lincRNA chr7:47694922 chr7:47694925 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_85722 0 0 0 0 1 C7orf65 chr7:47694946 5'GT 47694946 Upstream 22bp
chr1 32672342 32672342 1 + C T UCEC 32672340 + 32672320 32672360 41 AGCCAAGAGAAGACCAGAGACACGACAAGGATGGAGAATCC AGCCAAGAGAAGACCAGAGACATGACAAGGATGGAGAATCC < 41bp 0.837243472786849 0.622426561341286 0.1321688 0.0889574 prediction 0.429633822891127 Functional Loss - IQCC ENSG00000160051 CDS Human protein_coding chr1:32672340 chr1:32672342 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_85723 0 0 0 0 1 IQCC chr1:32672362 5'GT 32672362 Upstream 21bp
chr9 32420905 32420905 1 + G T OV 32420903 + 32420883 32420923 41 ATTTGTCGAGTTCTTCGGGCCTGGAGTAGCCCAGTTGTCCA ATTTGTCGAGTTCTTCGGGCCTTGAGTAGCCCAGTTGTCCA < 41bp 0.907298354275507 0.692483197955514 0.10674423 0.03991872 prediction 0.429630312639985 Functional Loss - ACO1 ENSG00000122729 CDS Human protein_coding chr9:32420903 chr9:32420905 stopgain 0.999 1 23 hm5C_associated_SNPs_85726 0 0 0 0 1 ACO1 chr9:32420854 3'AG 32420854 Downstream 52bp
chr20 30674504 30674504 1 + G T OV 30674502 + 30674482 30674522 41 GCATGTCGGTGGAGGCCTTCCTGGCAGAGGCCAACGTGATG GCATGTCGGTGGAGGCCTTCCTTGCAGAGGCCAACGTGATG < 41bp 0.714810437226147 0.364342587361039 0.12504333 0.057385325 prediction 0.429620874452295 Functional Loss - HCK ENSG00000101336 CDS Human protein_coding chr20:30674502 chr20:30674504 synonymous SNV . 0 23 hm5C_associated_SNPs_85728 0 0 0 0 1 HCK chr20:30674431 3'AG 30674431 Downstream 74bp
chr17 7288002 7288002 1 + G A COAD 7287999 + 7287979 7288019 41 GCTCCAGGGCCCTCTACTCCCTCGCCTTGCGCTGCTGGGCC GCTCCAGGGCCCTCTACTCCCTCACCTTGCGCTGCTGGGCC < 41bp 0.81278160260458 0.597974853866204 0.11192766 0.06322181 prediction 0.429613497476751 Functional Loss - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7287999 chr17:7288002 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_85733 0 0 0 0 1 TNK1 chr17:7288073 5'GT 7288073 Upstream 72bp
chr4 106861719 106861719 1 + G A LAML 106861716 + 106861696 106861736 41 GTATCAGTGCAGCAGCTTTGCTCGATGTTATAACATACGTG GTATCAGTGCAGCAGCTTTGCTCAATGTTATAACATACGTG < 41bp 0.797714437481882 0.582914988695128 0.27010715 0.6715815 prediction 0.429598897573509 Functional Loss - NPNT ENSG00000168743 CDS Human protein_coding chr4:106861716 chr4:106861719 nonsynonymous SNV 0.981 1 24 hm5C_associated_SNPs_85735 0 0 1 0 2 NPNT chr4:106861671 3'AG 106861671 Downstream 49bp
chr4 106861719 106861719 1 + G A LAML 106861716 + 106861696 106861736 41 GTATCAGTGCAGCAGCTTTGCTCGATGTTATAACATACGTG GTATCAGTGCAGCAGCTTTGCTCAATGTTATAACATACGTG < 41bp 0.797714437481882 0.582914988695128 0.27010715 0.6715815 prediction 0.429598897573509 Functional Loss - NPNT ENSG00000168743 CDS Human protein_coding chr4:106861716 chr4:106861719 nonsynonymous SNV 0.981 1 24 hm5C_associated_SNPs_85735 0 0 1 0 2 NPNT chr4:106861793 5'GT 106861793 Upstream 75bp
chr17 6939846 6939846 1 + G T HNSC 6939843 + 6939823 6939863 41 TTGTGGCGGCGTTTGAGGAGCAGGCAGCGCGCGTCTCCTGG TTGTGGCGGCGTTTGAGGAGCAGTCAGCGCGCGTCTCCTGG < 41bp 0.714796767016157 0.313417854467576 0.91189164 0.83995867 prediction 0.429593534032314 Functional Loss - SLC16A13 ENSG00000174327 CDS Human protein_coding chr17:6939843 chr17:6939846 nonsynonymous SNV 0.962 1 24 hm5C_associated_SNPs_85738 0 0 1 0 1 SLC16A13 chr17:6939900 5'GT 6939900 Upstream 55bp
chr1 236918356 236918356 1 + T C LUSC 236918355 + 236918335 236918375 41 CCATCCAGATCACAGGAGCCCTGGAAGACCAGATGAACCAG CCATCCAGATCACAGGAGCCCCGGAAGACCAGATGAACCAG < 41bp 0.831010366102178 0.616217063785059 0.3040104 0.34324655 prediction 0.429586604634237 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236918355 chr1:236918356 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_85739 0 0 0 0 1 ACTN2 chr1:236918319 3'AG 236918319 Downstream 38bp
chr17 34964141 34964141 1 + G A STAD 34964138 + 34964118 34964158 41 CAGGGCTGGCTCGTGGCCGGCACGGTGGGCTGCCCAAGCAC CAGGGCTGGCTCGTGGCCGGCACAGTGGGCTGCCCAAGCAC < 41bp 0.821082196776491 0.606295238070307 0.88698035 0.84112144 prediction 0.429573917412367 Functional Loss - MRM1 ENSG00000129282 CDS Human other chr17:34964138 chr17:34964141 synonymous SNV . 0 24 hm5C_associated_SNPs_85741 0 0 1 0 2 MRM1 chr17:34964106 3'AG 34964106 Downstream 36bp
chr17 34964141 34964141 1 + G A STAD 34964138 + 34964118 34964158 41 CAGGGCTGGCTCGTGGCCGGCACGGTGGGCTGCCCAAGCAC CAGGGCTGGCTCGTGGCCGGCACAGTGGGCTGCCCAAGCAC < 41bp 0.821082196776491 0.606295238070307 0.88698035 0.84112144 prediction 0.429573917412367 Functional Loss - MRM1 ENSG00000129282 CDS Human other chr17:34964138 chr17:34964141 synonymous SNV . 0 24 hm5C_associated_SNPs_85741 0 0 1 0 2 MRM1 chr17:34964238 5'GT 34964238 Upstream 98bp
chr17 66339827 66339827 1 + G T GBM 66339823 + 66339803 66339843 41 ACCGGCCGGCTTGGCCTTCGCAATGGAGTCACACGCAACTT ACCGGCCGGCTTGGCCTTCGCAATTGAGTCACACGCAACTT < 41bp 0.71853214639009 0.503745713408754 0.48275766 0.3404101 prediction 0.429572865962674 Functional Loss - ARSG ENSG00000141337 CDS Human protein_coding chr17:66339823 chr17:66339827 stopgain 0.991 1 25 hm5C_associated_SNPs_85742 0 0 0 0 1 ARSG chr17:66339745 3'AG 66339745 Downstream 83bp
chr11 118263589 118263589 1 + C T STAD 118263587 + 118263567 118263607 41 AGAGTCACTGTGGATAGATCCACCATTGCAAGACATTTGCT AGAGTCACTGTGGATAGATCCATCATTGCAAGACATTTGCT < 41bp 0.714786288171768 0.411095103332369 0.0504148 0.027514666 prediction 0.429572576343535 Functional Loss - UBE4A ENSG00000110344 CDS Human protein_coding chr11:118263587 chr11:118263589 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_85743 0 0 1 0 1 UBE4A chr11:118263610 5'GT 118263610 Upstream 22bp
chr8 144463806 144463806 1 + G A SKCM 144463803 + 144463783 144463823 41 GGTGGGGCCCGTCCACCTGACCCGAGGAGAGGGCGGCTTTG GGTGGGGCCCGTCCACCTGACCCAAGGAGAGGGCGGCTTTG < 41bp 0.714784982744617 0.466477255825141 0.57910764 0.4236435 prediction 0.429569965489234 Functional Loss - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144463803 chr8:144463806 nonsynonymous SNV 0.970 3 24 hm5C_associated_SNPs_85745 0 0 0 0 2 RHPN1 chr8:144463742 3'AG 144463742 Downstream 65bp
chr8 144463806 144463806 1 + G A SKCM 144463803 + 144463783 144463823 41 GGTGGGGCCCGTCCACCTGACCCGAGGAGAGGGCGGCTTTG GGTGGGGCCCGTCCACCTGACCCAAGGAGAGGGCGGCTTTG < 41bp 0.714784982744617 0.466477255825141 0.57910764 0.4236435 prediction 0.429569965489234 Functional Loss - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144463803 chr8:144463806 nonsynonymous SNV 0.970 3 24 hm5C_associated_SNPs_85745 0 0 0 0 2 RHPN1 chr8:144463888 5'GT 144463888 Upstream 83bp
chr16 57769728 57769728 1 + G A rs541924454 57769725 + 57769705 57769745 41 GGATGGAGGCAAGTGGGGGTCGCGCCTGGAGCGGAGCCTCG GGATGGAGGCAAGTGGGGGTCGCACCTGGAGCGGAGCCTCG < 41bp 0.76577418726389 0.550989660964249 0.5991238 0.4413629 prediction 0.429569052599282 Functional Loss - KATNB1 ENSG00000140854 UTR5 Human protein_coding chr16:57769725 chr16:57769728 . . 0 24 hm5C_associated_SNPs_85746 0 0 1 0 1 KATNB1 chr16:57769767 5'GT 57769767 Upstream 40bp
chr6 43406366 43406366 1 + C T LUSC 43406363 + 43406343 43406383 41 CTCGCCTGGCTCTCTGCAGGCTGCGTGGGCATGTGGCAGTG CTCGCCTGGCTCTCTGCAGGCTGTGTGGGCATGTGGCAGTG < 41bp 0.714782796862426 0.497150959117328 0.36971098 0.37932143 prediction 0.429565593724851 Functional Loss - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43406363 chr6:43406366 nonsynonymous SNV 0.439 1 24 hm5C_associated_SNPs_85748 0 0 1 0 1 ABCC10 chr6:43406362 3'AG 43406362 Downstream 5bp
chr1 16375659 16375659 1 + T C rs144517772 16375658 + 16375638 16375678 41 ATGTCTTCCCACTTCTCTGTCTGGGATTACTGGAGGGGCTT ATGTCTTCCCACTTCTCTGTCCGGGATTACTGGAGGGGCTT < 41bp 0.786441939291061 0.571663710643171 0.9248511 0.93570435 prediction 0.429556457295781 Functional Loss - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16375658 chr1:16375659 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_85749 0 0 0 0 1 CLCNKB chr1:16375615 3'AG 16375615 Downstream 45bp
chr19 7960521 7960521 1 + G A LIHC 7960518 + 7960498 7960538 41 GTGGCCGAGTTCAAGCAGTTCACGGAACAGCAGCCTGCGTT GTGGCCGAGTTCAAGCAGTTCACAGAACAGCAGCCTGCGTT < 41bp 0.807003959759083 0.592225841749693 0.12865111 0.06119755 prediction 0.429556236018779 Functional Loss - LRRC8E ENSG00000171017 CDS Human protein_coding chr19:7960518 chr19:7960521 synonymous SNV . 0 24 hm5C_associated_SNPs_85750 0 0 0 0 1 LRRC8E chr19:7960484 3'AG 7960484 Downstream 38bp
chr10 75675065 75675065 1 + C T COAD 75675062 + 75675042 75675082 41 CTGTTGTGAAGCTGATTTCCCACCGGGAGTGTCAGCAGCCC CTGTTGTGAAGCTGATTTCCCACTGGGAGTGTCAGCAGCCC < 41bp 0.736842853533316 0.522074311373537 0.32050928 0.12456557 prediction 0.429537084319558 Functional Loss - PLAU ENSG00000122861 CDS Human protein_coding chr10:75675062 chr10:75675065 nonsynonymous SNV 0.072 3 24 hm5C_associated_SNPs_85755 0 0 0 0 2 PLAU chr10:75675009 3'AG 75675009 Downstream 57bp
chr10 75675065 75675065 1 + C T COAD 75675062 + 75675042 75675082 41 CTGTTGTGAAGCTGATTTCCCACCGGGAGTGTCAGCAGCCC CTGTTGTGAAGCTGATTTCCCACTGGGAGTGTCAGCAGCCC < 41bp 0.736842853533316 0.522074311373537 0.32050928 0.12456557 prediction 0.429537084319558 Functional Loss - PLAU ENSG00000122861 CDS Human protein_coding chr10:75675062 chr10:75675065 nonsynonymous SNV 0.072 3 24 hm5C_associated_SNPs_85755 0 0 0 0 2 PLAU chr10:75675157 5'GT 75675157 Upstream 93bp
chr5 148622098 148622098 1 + C T UCEC 148622095 + 148622075 148622115 41 GGAAACCCCCGATCTACAAACGGCATGGTATGGTCAGAGGT GGAAACCCCCGATCTACAAACGGTATGGTATGGTCAGAGGT < 41bp 0.714766557722113 0.48902635570337 0.20517018 0.1325838 prediction 0.429533115444226 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148622095 chr5:148622098 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_85756 0 0 0 0 2 ABLIM3 chr5:148622054 3'AG 148622054 Downstream 45bp
chr5 148622098 148622098 1 + C T UCEC 148622095 + 148622075 148622115 41 GGAAACCCCCGATCTACAAACGGCATGGTATGGTCAGAGGT GGAAACCCCCGATCTACAAACGGTATGGTATGGTCAGAGGT < 41bp 0.714766557722113 0.48902635570337 0.20517018 0.1325838 prediction 0.429533115444226 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148622095 chr5:148622098 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_85756 0 0 0 0 2 ABLIM3 chr5:148622101 5'GT 148622101 Upstream 4bp
chr12 56487333 56487333 1 + C T LGG 56487330 + 56487310 56487350 41 CATAATCGGCCGCGCAGAGACTGCGGTGAGGGAAAGGGTCT CATAATCGGCCGCGCAGAGACTGTGGTGAGGGAAAGGGTCT < 41bp 0.715402854485764 0.500638518128258 0.30599004 0.17951041 prediction 0.429528672715012 Functional Loss - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56487330 chr12:56487333 synonymous SNV . 0 24 hm5C_associated_SNPs_85757 0 0 1 0 1 ERBB3 chr12:56487334 5'GT 56487334 Upstream 2bp
chr17 48674154 48674154 1 + C T THYM 48674152 + 48674132 48674172 41 CTGCCGCCTCTCATCATCCACACGGCCGCCACACCCATGTC CTGCCGCCTCTCATCATCCACATGGCCGCCACACCCATGTC < 41bp 0.714762694076181 0.494759600147121 0.051986158 0.06658569 prediction 0.429525388152362 Functional Loss - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48674152 chr17:48674154 nonsynonymous SNV 0.961 5 23 hm5C_associated_SNPs_85759 0 0 0 0 1 CACNA1G chr17:48674091 3'AG 48674091 Downstream 64bp
chr11 134234253 134234253 1 + C T rs139338435 134234251 + 134234231 134234271 41 CCATCAACTTGCAGTCAACACACGAGCTGCAGCTACTGACC CCATCAACTTGCAGTCAACACATGAGCTGCAGCTACTGACC < 41bp 0.837382194256284 0.622619654438281 0.36847538 0.30981994 prediction 0.429525079636005 Functional Loss - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134234251 chr11:134234253 synonymous SNV . 0 23 hm5C_associated_SNPs_85760 0 0 0 0 2 GLB1L2 chr11:134234222 3'AG 134234222 Downstream 32bp
chr11 134234253 134234253 1 + C T rs139338435 134234251 + 134234231 134234271 41 CCATCAACTTGCAGTCAACACACGAGCTGCAGCTACTGACC CCATCAACTTGCAGTCAACACATGAGCTGCAGCTACTGACC < 41bp 0.837382194256284 0.622619654438281 0.36847538 0.30981994 prediction 0.429525079636005 Functional Loss - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134234251 chr11:134234253 synonymous SNV . 0 23 hm5C_associated_SNPs_85760 0 0 0 0 2 GLB1L2 chr11:134234292 5'GT 134234292 Upstream 40bp
chr1 15976265 15976265 1 + G A OV 15976262 + 15976242 15976282 41 TGCCATGTTCCTTCTCTATACTTGAGGAACAGCCCATGGAC TGCCATGTTCCTTCTCTATACTTAAGGAACAGCCCATGGAC < 41bp 0.787799123232004 0.573046924337016 0.21943387 0.13447219 prediction 0.429504397789976 Functional Loss - DDI2 ENSG00000197312 CDS Human protein_coding chr1:15976262 chr1:15976265 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_85762 0 0 1 0 2 DDI2 chr1:15976215 3'AG 15976215 Downstream 51bp
chr1 15976265 15976265 1 + G A OV 15976262 + 15976242 15976282 41 TGCCATGTTCCTTCTCTATACTTGAGGAACAGCCCATGGAC TGCCATGTTCCTTCTCTATACTTAAGGAACAGCCCATGGAC < 41bp 0.787799123232004 0.573046924337016 0.21943387 0.13447219 prediction 0.429504397789976 Functional Loss - DDI2 ENSG00000197312 CDS Human protein_coding chr1:15976262 chr1:15976265 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_85762 0 0 1 0 2 DDI2 chr1:15976318 5'GT 15976318 Upstream 54bp
chr3 153839245 153839245 1 + C T rs35525643 153839243 + 153839223 153839263 41 TCTCGCGGCTGCGCTTCGGTCCCGGACCCGGGCCACCCACG TCTCGCGGCTGCGCTTCGGTCCTGGACCCGGGCCACCCACG < 41bp 0.714749126488281 0.477800395181065 0.8061285 0.43623433 prediction 0.429498252976562 Functional Loss - ARHGEF26 ENSG00000114790 UTR5 Human protein_coding chr3:153839243 chr3:153839245 . . 0 23 hm5C_associated_SNPs_85766 0 0 1 0 1 ARHGEF26 chr3:153839308 5'GT 153839308 Upstream 64bp
chr21 42807863 42807863 1 + G T SARC 42807860 + 42807840 42807880 41 CTCTAGGTGTGGAGCAGGACCTGGCCCTGCCAGCCATCGCC CTCTAGGTGTGGAGCAGGACCTGTCCCTGCCAGCCATCGCC < 41bp 0.714749114109133 0.300526912237646 0.37070608 0.23400438 prediction 0.429498228218266 Functional Loss - MX1 ENSG00000157601 CDS Human protein_coding chr21:42807860 chr21:42807863 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_85767 0 0 0 0 2 MX1 chr21:42807764 3'AG 42807764 Downstream 100bp
chr21 42807863 42807863 1 + G T SARC 42807860 + 42807840 42807880 41 CTCTAGGTGTGGAGCAGGACCTGGCCCTGCCAGCCATCGCC CTCTAGGTGTGGAGCAGGACCTGTCCCTGCCAGCCATCGCC < 41bp 0.714749114109133 0.300526912237646 0.37070608 0.23400438 prediction 0.429498228218266 Functional Loss - MX1 ENSG00000157601 CDS Human protein_coding chr21:42807860 chr21:42807863 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_85767 0 0 0 0 2 MX1 chr21:42807956 5'GT 42807956 Upstream 94bp
chr16 67236358 67236358 1 + C T STAD 67236356 + 67236336 67236376 41 TCGGCCAAGACCAGAGCTTCCACGAGCTCTTCTGTGTGGGC TCGGCCAAGACCAGAGCTTCCATGAGCTCTTCTGTGTGGGC < 41bp 0.863663975148691 0.648918822097775 0.49275848 0.43123445 prediction 0.429490306101831 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67236356 chr16:67236358 synonymous SNV . 0 23 hm5C_associated_SNPs_85771 0 0 0 0 2 ELMO3 chr16:67236300 3'AG 67236300 Downstream 59bp
chr16 67236358 67236358 1 + C T STAD 67236356 + 67236336 67236376 41 TCGGCCAAGACCAGAGCTTCCACGAGCTCTTCTGTGTGGGC TCGGCCAAGACCAGAGCTTCCATGAGCTCTTCTGTGTGGGC < 41bp 0.863663975148691 0.648918822097775 0.49275848 0.43123445 prediction 0.429490306101831 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67236356 chr16:67236358 synonymous SNV . 0 23 hm5C_associated_SNPs_85771 0 0 0 0 2 ELMO3 chr16:67236436 5'GT 67236436 Upstream 79bp
chr2 202141631 202141631 1 + C T HNSC 202141629 + 202141609 202141649 41 CAATCACAATTTTGCAAAAGCACGGGAGAAAGTGCCCAAAC CAATCACAATTTTGCAAAAGCATGGGAGAAAGTGCCCAAAC < 41bp 0.780150128997657 0.565407175903584 0.18316346 0.2639839 prediction 0.429485906188146 Functional Loss - CASP8 ENSG00000064012 CDS Human protein_coding chr2:202141629 chr2:202141631 nonsynonymous SNV 0.009 3 23 hm5C_associated_SNPs_85772 1 0 1 0 1 CASP8 chr2:202141550 3'AG 202141550 Downstream 82bp
chr16 34983170 34983170 1 + C T rs184911363 34983168 + 34983148 34983188 41 GTGGGTTTCCGTCCCAGCAGCCCGGGCGCCACAGCAGTCTG GTGGGTTTCCGTCCCAGCAGCCTGGGCGCCACAGCAGTCTG < 41bp 0.75054646201561 0.535803805317528 0.27016214 0.1053341 prediction 0.429485313396164 Functional Loss - LINC02167 ENSG00000261122 ncRNA_exonic Human lincRNA chr16:34983168 chr16:34983170 . . 0 23 hm5C_associated_SNPs_85774 0 0 0 0 2 LINC02167 chr16:34983132 3'AG 34983132 Downstream 39bp
chr16 34983170 34983170 1 + C T rs184911363 34983168 + 34983148 34983188 41 GTGGGTTTCCGTCCCAGCAGCCCGGGCGCCACAGCAGTCTG GTGGGTTTCCGTCCCAGCAGCCTGGGCGCCACAGCAGTCTG < 41bp 0.75054646201561 0.535803805317528 0.27016214 0.1053341 prediction 0.429485313396164 Functional Loss - LINC02167 ENSG00000261122 ncRNA_exonic Human lincRNA chr16:34983168 chr16:34983170 . . 0 23 hm5C_associated_SNPs_85774 0 0 0 0 2 LINC02167 chr16:34983208 5'GT 34983208 Upstream 39bp
chr9 135929847 135929847 1 + C T rs79165136 135929844 + 135929824 135929864 41 GCAAAGCGCAGCACCTACAACTACAGCCTCCCCATCACCGT GCAAAGCGCAGCACCTACAACTATAGCCTCCCCATCACCGT < 41bp 0.762227474280816 0.547485132039278 0.018927068 0.04121411 prediction 0.429484684483077 Functional Loss - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135929844 chr9:135929847 synonymous SNV . 0 24 hm5C_associated_SNPs_85776 0 0 1 0 2 GTF3C5 chr9:135929795 3'AG 135929795 Downstream 53bp
chr9 135929847 135929847 1 + C T rs79165136 135929844 + 135929824 135929864 41 GCAAAGCGCAGCACCTACAACTACAGCCTCCCCATCACCGT GCAAAGCGCAGCACCTACAACTATAGCCTCCCCATCACCGT < 41bp 0.762227474280816 0.547485132039278 0.018927068 0.04121411 prediction 0.429484684483077 Functional Loss - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135929844 chr9:135929847 synonymous SNV . 0 24 hm5C_associated_SNPs_85776 0 0 1 0 2 GTF3C5 chr9:135929875 5'GT 135929875 Upstream 29bp
chr20 2384286 2384286 1 + G A UCEC 2384283 + 2384263 2384303 41 TCCGCGAGGGTGATGTGCACCTGGCTCACGATGGCCCCTTC TCCGCGAGGGTGATGTGCACCTGACTCACGATGGCCCCTTC < 41bp 0.811294574533845 0.596555315551572 0.18835872 0.103153646 prediction 0.429478517964547 Functional Loss - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2384283 chr20:2384286 nonsynonymous SNV 0.711 2 24 hm5C_associated_SNPs_85777 0 0 0 0 1 TGM6 chr20:2384227 3'AG 2384227 Downstream 60bp
chr10 11797468 11797468 1 + C T SARC 11797466 + 11797446 11797486 41 GCCATGGTCAATGGCCTGGCCGCGGCTGCCGGCTGTCAACT GCCATGGTCAATGGCCTGGCCGTGGCTGCCGGCTGTCAACT < 41bp 0.826105007616494 0.611365787490028 0.39237103 0.23858055 prediction 0.429478440252932 Functional Loss - ECHDC3 ENSG00000134463 CDS Human protein_coding chr10:11797466 chr10:11797468 nonsynonymous SNV 0.713 2 23 hm5C_associated_SNPs_85778 0 0 0 0 1 ECHDC3 chr10:11797407 3'AG 11797407 Downstream 62bp
chr12 52435632 52435632 1 + A C rs138157115 52435631 + 52435611 52435651 41 AGGCCAGGCCCTGCCCCTCCCAGGCAGCCTGGCTCCTTCTG AGGCCAGGCCCTGCCCCTCCCCGGCAGCCTGGCTCCTTCTG < 41bp 0.714733554502942 0.457070844194218 0.8588368 0.21653003 prediction 0.429467109005885 Functional Loss - NR4A1 ENSG00000123358 CDS Human protein_coding chr12:52435631 chr12:52435632 synonymous SNV . 0 22 hm5C_associated_SNPs_85780 0 0 0 0 2 NR4A1 chr12:52435594 3'AG 52435594 Downstream 39bp
chr12 52435632 52435632 1 + A C rs138157115 52435631 + 52435611 52435651 41 AGGCCAGGCCCTGCCCCTCCCAGGCAGCCTGGCTCCTTCTG AGGCCAGGCCCTGCCCCTCCCCGGCAGCCTGGCTCCTTCTG < 41bp 0.714733554502942 0.457070844194218 0.8588368 0.21653003 prediction 0.429467109005885 Functional Loss - NR4A1 ENSG00000123358 CDS Human protein_coding chr12:52435631 chr12:52435632 synonymous SNV . 0 22 hm5C_associated_SNPs_85780 0 0 0 0 2 NR4A1 chr12:52435713 5'GT 52435713 Upstream 82bp
chr17 40456393 40456393 1 + C T BRCA 40456390 + 40456370 40456410 41 GGTGAGATCCTGAACAACTGCTGCGTGATGGAGTACCACCA GGTGAGATCCTGAACAACTGCTGTGTGATGGAGTACCACCA < 41bp 0.71472959881807 0.485620813031214 0.7248752 0.45805755 prediction 0.42945919763614 Functional Loss - STAT5A ENSG00000126561 CDS Human protein_coding chr17:40456390 chr17:40456393 synonymous SNV . 0 24 hm5C_associated_SNPs_85784 0 0 1 0 2 STAT5A chr17:40456360 3'AG 40456360 Downstream 34bp
chr17 40456393 40456393 1 + C T BRCA 40456390 + 40456370 40456410 41 GGTGAGATCCTGAACAACTGCTGCGTGATGGAGTACCACCA GGTGAGATCCTGAACAACTGCTGTGTGATGGAGTACCACCA < 41bp 0.71472959881807 0.485620813031214 0.7248752 0.45805755 prediction 0.42945919763614 Functional Loss - STAT5A ENSG00000126561 CDS Human protein_coding chr17:40456390 chr17:40456393 synonymous SNV . 0 24 hm5C_associated_SNPs_85784 0 0 1 0 2 STAT5A chr17:40456447 5'GT 40456447 Upstream 55bp
chr16 68573678 68573678 1 + G A rs202082484 68573675 + 68573655 68573695 41 CCCCAGCTCCTGCCCCGGAGCCGGGCCCTGGCGAGGCAGGA CCCCAGCTCCTGCCCCGGAGCCGAGCCCTGGCGAGGCAGGA < 41bp 0.766029160803717 0.551301391045969 0.8490635 0.55215555 prediction 0.429455539515496 Functional Loss - ZFP90 ENSG00000184939 UTR5 Human protein_coding chr16:68573675 chr16:68573678 . . 0 24 hm5C_associated_SNPs_85787 0 0 1 0 1 ZFP90 chr16:68573728 5'GT 68573728 Upstream 51bp
chr4 20591305 20591305 1 + G A SKCM 20591302 + 20591282 20591322 41 AGAAGCTGGACTTCTGTGCCCAGGACCTGAACCCCTGCCAG AGAAGCTGGACTTCTGTGCCCAGAACCTGAACCCCTGCCAG < 41bp 0.769167282290607 0.554440837793883 0.28193596 0.28638178 prediction 0.429452888993448 Functional Loss - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20591302 chr4:20591305 nonsynonymous SNV 0.962 2 24 hm5C_associated_SNPs_85789 0 0 0 0 2 SLIT2 chr4:20591267 3'AG 20591267 Downstream 39bp
chr4 20591305 20591305 1 + G A SKCM 20591302 + 20591282 20591322 41 AGAAGCTGGACTTCTGTGCCCAGGACCTGAACCCCTGCCAG AGAAGCTGGACTTCTGTGCCCAGAACCTGAACCCCTGCCAG < 41bp 0.769167282290607 0.554440837793883 0.28193596 0.28638178 prediction 0.429452888993448 Functional Loss - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20591302 chr4:20591305 nonsynonymous SNV 0.962 2 24 hm5C_associated_SNPs_85789 0 0 0 0 2 SLIT2 chr4:20591360 5'GT 20591360 Upstream 56bp
chr15 27128556 27128556 1 + C T LUAD 27128553 + 27128533 27128573 41 TTCGGTTTAAGGGGCCCATGCAGCGCCTCCCTCTCAACAAC TTCGGTTTAAGGGGCCCATGCAGTGCCTCCCTCTCAACAAC < 41bp 0.725950409669135 0.511226627319348 0.33338624 0.0564287 prediction 0.429447564699574 Functional Loss - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27128553 chr15:27128556 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_85790 0 0 0 0 1 GABRA5 chr15:27128484 3'AG 27128484 Downstream 73bp
chr2 228153875 228153875 1 + G A SKCM 228153872 + 228153852 228153892 41 GTTTCTAACTTCAGGATTCGCAGGAAATCCAGGTGAGAAAG GTTTCTAACTTCAGGATTCGCAGAAAATCCAGGTGAGAAAG < 41bp 0.714722135277867 0.483177661645709 0.8975164 0.6022799 prediction 0.429444270555734 Functional Loss - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228153872 chr2:228153875 nonsynonymous SNV 0.039 5 24 hm5C_associated_SNPs_85792 0 0 0 0 2 COL4A3 chr2:228153866 3'AG 228153866 Downstream 10bp
chr2 228153875 228153875 1 + G A SKCM 228153872 + 228153852 228153892 41 GTTTCTAACTTCAGGATTCGCAGGAAATCCAGGTGAGAAAG GTTTCTAACTTCAGGATTCGCAGAAAATCCAGGTGAGAAAG < 41bp 0.714722135277867 0.483177661645709 0.8975164 0.6022799 prediction 0.429444270555734 Functional Loss - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228153872 chr2:228153875 nonsynonymous SNV 0.039 5 24 hm5C_associated_SNPs_85792 0 0 0 0 2 COL4A3 chr2:228153964 5'GT 228153964 Upstream 90bp
chr5 135391410 135391410 1 + G T UCEC 135391407 + 135391387 135391427 41 AGCTGCATCGCGGCCCACGACAAGAGGGGGAGGTACGGGAC AGCTGCATCGCGGCCCACGACAATAGGGGGAGGTACGGGAC < 41bp 0.93326564556712 0.718545976842999 0.37981355 0.22839367 prediction 0.429439337448242 Functional Loss - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135391407 chr5:135391410 nonsynonymous SNV 0.360 4 24 hm5C_associated_SNPs_85793 0 0 1 0 2 TGFBI chr5:135391369 3'AG 135391369 Downstream 42bp
chr5 135391410 135391410 1 + G T UCEC 135391407 + 135391387 135391427 41 AGCTGCATCGCGGCCCACGACAAGAGGGGGAGGTACGGGAC AGCTGCATCGCGGCCCACGACAATAGGGGGAGGTACGGGAC < 41bp 0.93326564556712 0.718545976842999 0.37981355 0.22839367 prediction 0.429439337448242 Functional Loss - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135391407 chr5:135391410 nonsynonymous SNV 0.360 4 24 hm5C_associated_SNPs_85793 0 0 1 0 2 TGFBI chr5:135391505 5'GT 135391505 Upstream 96bp
chr16 67235937 67235937 1 + A C rs201952611 67235936 + 67235916 67235956 41 CCCGGTCTGCTGGCCCTGGACAACATGTTGTACTTCTCCAG CCCGGTCTGCTGGCCCTGGACCACATGTTGTACTTCTCCAG < 41bp 0.83478492989372 0.620071249327164 0.23499185 0.21111876 prediction 0.429427361133113 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67235936 chr16:67235937 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_85797 0 0 0 0 2 ELMO3 chr16:67235880 3'AG 67235880 Downstream 58bp
chr16 67235937 67235937 1 + A C rs201952611 67235936 + 67235916 67235956 41 CCCGGTCTGCTGGCCCTGGACAACATGTTGTACTTCTCCAG CCCGGTCTGCTGGCCCTGGACCACATGTTGTACTTCTCCAG < 41bp 0.83478492989372 0.620071249327164 0.23499185 0.21111876 prediction 0.429427361133113 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67235936 chr16:67235937 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_85797 0 0 0 0 2 ELMO3 chr16:67235981 5'GT 67235981 Upstream 45bp
chr14 105399138 105399138 1 + C T UCEC 105399136 + 105399116 105399156 41 TCGGAGGATTACTTCAGCAGCACGGCGGGGGTGGGCTTGGT TCGGAGGATTACTTCAGCAGCATGGCGGGGGTGGGCTTGGT < 41bp 0.784236510652267 0.56952496009315 0.3285822 0.5396694 prediction 0.429423101118235 Functional Loss - PLD4 ENSG00000166428 CDS Human protein_coding chr14:105399136 chr14:105399138 nonsynonymous SNV 0.570 4 23 hm5C_associated_SNPs_85798 0 0 0 0 1 PLD4 chr14:105399102 3'AG 105399102 Downstream 37bp
chr16 24192159 24192159 1 + G T PAAD 24192156 + 24192136 24192176 41 CTCGATTCTGAGGGACACATCAAGATTGCCGATTTTGGCAT CTCGATTCTGAGGGACACATCAATATTGCCGATTTTGGCAT < 41bp 0.714711415744669 0.34162126247508 0.4662819 0.13159156 prediction 0.429422831489338 Functional Loss - PRKCB ENSG00000166501 CDS Human protein_coding chr16:24192156 chr16:24192159 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_85799 0 0 1 0 2 PRKCB chr16:24192111 3'AG 24192111 Downstream 49bp
chr16 24192159 24192159 1 + G T PAAD 24192156 + 24192136 24192176 41 CTCGATTCTGAGGGACACATCAAGATTGCCGATTTTGGCAT CTCGATTCTGAGGGACACATCAATATTGCCGATTTTGGCAT < 41bp 0.714711415744669 0.34162126247508 0.4662819 0.13159156 prediction 0.429422831489338 Functional Loss - PRKCB ENSG00000166501 CDS Human protein_coding chr16:24192156 chr16:24192159 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_85799 0 0 1 0 2 PRKCB chr16:24192249 5'GT 24192249 Upstream 91bp
chr2 231103074 231103074 1 + G A UCEC 231103071 + 231103051 231103091 41 ATGGCCTATCCTGATTTAAACGAGATTTACAGAAGCTTCCA ATGGCCTATCCTGATTTAAACGAAATTTACAGAAGCTTCCA < 41bp 0.793633826345721 0.578924532855114 0.79419893 0.18546987 prediction 0.429418586981215 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231103071 chr2:231103074 synonymous SNV . 0 24 hm5C_associated_SNPs_85800 0 0 0 0 1 SP140 chr2:231103096 5'GT 231103096 Upstream 23bp
chr16 88781068 88781068 1 + G C LIHC 88781064 + 88781044 88781084 41 GCAGTCACCCATCCCCCTGACTGAGACCCGGACACCCCCGG GCAGTCACCCATCCCCCTGACTGACACCCGGACACCCCCGG < 41bp 0.714709222924451 0.414391485048708 0.32224804 0.17588425 prediction 0.429418445848902 Functional Loss - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781064 chr16:88781068 nonsynonymous SNV 0.010 0 25 hm5C_associated_SNPs_85801 0 0 1 0 2 CTU2 chr16:88780995 3'AG 88780995 Downstream 74bp
chr16 88781068 88781068 1 + G C LIHC 88781064 + 88781044 88781084 41 GCAGTCACCCATCCCCCTGACTGAGACCCGGACACCCCCGG GCAGTCACCCATCCCCCTGACTGACACCCGGACACCCCCGG < 41bp 0.714709222924451 0.414391485048708 0.32224804 0.17588425 prediction 0.429418445848902 Functional Loss - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781064 chr16:88781068 nonsynonymous SNV 0.010 0 25 hm5C_associated_SNPs_85801 0 0 1 0 2 CTU2 chr16:88781145 5'GT 88781145 Upstream 78bp
chr11 75439123 75439123 1 + G T UCEC 75439120 + 75439100 75439140 41 TGCCCAGGAGGCCCTGGATGCCAGGCCTGGATCCTTCACGC TGCCCAGGAGGCCCTGGATGCCATGCCTGGATCCTTCACGC < 41bp 0.714706374007233 0.302697206025485 0.72578895 0.18383116 prediction 0.429412748014466 Functional Loss - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75439120 chr11:75439123 nonsynonymous SNV 0.989 3 24 hm5C_associated_SNPs_85802 0 0 0 0 1 MOGAT2 chr11:75439189 5'GT 75439189 Upstream 67bp
chr4 166996071 166996071 1 + G A SKCM 166996068 + 166996048 166996088 41 AGGATAATGGTGGATGTCAGCACGAATGTGTCAACACGATG AGGATAATGGTGGATGTCAGCACAAATGTGTCAACACGATG < 41bp 0.714703999031139 0.487522470100603 0.19571018 0.12568665 prediction 0.429407998062277 Functional Loss - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166996068 chr4:166996071 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_85803 0 0 0 0 2 TLL1 chr4:166996030 3'AG 166996030 Downstream 42bp
chr4 166996071 166996071 1 + G A SKCM 166996068 + 166996048 166996088 41 AGGATAATGGTGGATGTCAGCACGAATGTGTCAACACGATG AGGATAATGGTGGATGTCAGCACAAATGTGTCAACACGATG < 41bp 0.714703999031139 0.487522470100603 0.19571018 0.12568665 prediction 0.429407998062277 Functional Loss - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166996068 chr4:166996071 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_85803 0 0 0 0 2 TLL1 chr4:166996155 5'GT 166996155 Upstream 85bp
chr13 19919318 19919318 1 + G A rs549181930 19919315 + 19919295 19919335 41 GCTCACAGGCACTTTGGGACCCCGAAAGAAAAGGCTGTGCC GCTCACAGGCACTTTGGGACCCCAAAAGAAAAGGCTGTGCC < 41bp 0.734583128167447 0.519880643442344 0.22941366 0.2700404 prediction 0.429404969450205 Functional Loss - LINC00421 ENSG00000236834 ncRNA_exonic Human lincRNA chr13:19919315 chr13:19919318 . . 0 24 hm5C_associated_SNPs_85804 0 0 0 0 1 LINC00421 chr13:19919357 5'GT 19919357 Upstream 40bp
chr17 4789812 4789812 1 + G A ESCA 4789809 + 4789789 4789829 41 ACTTACCTGAGCCGCCCACCCACGGAGCAGCTACTGAAGTT ACTTACCTGAGCCGCCCACCCACAGAGCAGCTACTGAAGTT < 41bp 0.727960341823892 0.513258553810971 0.3823194 0.3363061 prediction 0.429403576025844 Functional Loss - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4789809 chr17:4789812 synonymous SNV . 0 24 hm5C_associated_SNPs_85805 0 0 1 0 1 MINK1 chr17:4789746 3'AG 4789746 Downstream 67bp
chr1 24671397 24671397 1 + C T rs114518869 24671395 + 24671375 24671415 41 ACTTCATTGCAGGCAGCCCCCTCGGCAGGACCCAGCAGCTC ACTTCATTGCAGGCAGCCCCCTTGGCAGGACCCAGCAGCTC < 41bp 0.828748601888213 0.61404728548624 0.07207358 0.09945735 prediction 0.429402632803946 Functional Loss - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24671395 chr1:24671397 nonsynonymous SNV 0.040 0 23 hm5C_associated_SNPs_85806 0 0 0 0 2 GRHL3 chr1:24671387 3'AG 24671387 Downstream 11bp
chr1 24671397 24671397 1 + C T rs114518869 24671395 + 24671375 24671415 41 ACTTCATTGCAGGCAGCCCCCTCGGCAGGACCCAGCAGCTC ACTTCATTGCAGGCAGCCCCCTTGGCAGGACCCAGCAGCTC < 41bp 0.828748601888213 0.61404728548624 0.07207358 0.09945735 prediction 0.429402632803946 Functional Loss - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24671395 chr1:24671397 nonsynonymous SNV 0.040 0 23 hm5C_associated_SNPs_85806 0 0 0 0 2 GRHL3 chr1:24671421 5'GT 24671421 Upstream 25bp
chr22 27018596 27018596 1 + G T UCEC 27018593 + 27018573 27018613 41 TGCACAAAGTCAGCGGGACCCTGGAAGGTAGGAAGAGGCAT TGCACAAAGTCAGCGGGACCCTGTAAGGTAGGAAGAGGCAT < 41bp 0.925727216401309 0.711026635020939 0.2762444 0.075817764 prediction 0.429401162760739 Functional Loss - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27018593 chr22:27018596 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_85808 0 0 0 0 2 CRYBA4 chr22:27018549 3'AG 27018549 Downstream 48bp
chr22 27018596 27018596 1 + G T UCEC 27018593 + 27018573 27018613 41 TGCACAAAGTCAGCGGGACCCTGGAAGGTAGGAAGAGGCAT TGCACAAAGTCAGCGGGACCCTGTAAGGTAGGAAGAGGCAT < 41bp 0.925727216401309 0.711026635020939 0.2762444 0.075817764 prediction 0.429401162760739 Functional Loss - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27018593 chr22:27018596 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_85808 0 0 0 0 2 CRYBA4 chr22:27018599 5'GT 27018599 Upstream 4bp
chr11 62502885 62502885 1 + C T rs117790598 62502882 + 62502862 62502902 41 CTTCAGATGGAGCCCGTGAACTACGAACGAGTGAGAGAATA CTTCAGATGGAGCCCGTGAACTATGAACGAGTGAGAGAATA < 41bp 0.756107671471443 0.541410181376916 0.14452973 0.083046526 prediction 0.429394980189054 Functional Loss - TTC9C ENSG00000162222 CDS Human protein_coding chr11:62502882 chr11:62502885 synonymous SNV . 0 24 hm5C_associated_SNPs_85813 0 0 1 0 1 TTC9C chr11:62502854 3'AG 62502854 Downstream 32bp
chr5 71015722 71015722 1 + G A PAAD 71015719 + 71015699 71015739 41 TGTTGCAGATCGAAGCGCTGCAAGAAGTCTTGAAGAAGCTC TGTTGCAGATCGAAGCGCTGCAAAAAGTCTTGAAGAAGCTC < 41bp 0.784017477671558 0.569323417303889 0.2955457 0.287183 prediction 0.429388120735337 Functional Loss - CARTPT ENSG00000164326 CDS Human protein_coding chr5:71015719 chr5:71015722 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_85815 0 0 0 0 2 CARTPT chr5:71015707 3'AG 71015707 Downstream 16bp
chr5 71015722 71015722 1 + G A PAAD 71015719 + 71015699 71015739 41 TGTTGCAGATCGAAGCGCTGCAAGAAGTCTTGAAGAAGCTC TGTTGCAGATCGAAGCGCTGCAAAAAGTCTTGAAGAAGCTC < 41bp 0.784017477671558 0.569323417303889 0.2955457 0.287183 prediction 0.429388120735337 Functional Loss - CARTPT ENSG00000164326 CDS Human protein_coding chr5:71015719 chr5:71015722 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_85815 0 0 0 0 2 CARTPT chr5:71015790 5'GT 71015790 Upstream 69bp
chr18 10550172 10550172 1 + G A rs188246792 10550169 + 10550149 10550189 41 AAGCCTGATGGTGTCACTGCCACGGCTGCTGATGAAGAGGA AAGCCTGATGGTGTCACTGCCACAGCTGCTGATGAAGAGGA < 41bp 0.768190926488436 0.553499314923042 0.6691149 0.4324607 prediction 0.429383223130787 Functional Loss - NAPG ENSG00000134265 CDS Human protein_coding chr18:10550169 chr18:10550172 synonymous SNV . 0 24 hm5C_associated_SNPs_85817 0 0 1 0 1 NAPG chr18:10550074 3'AG 10550074 Downstream 99bp
chr17 4804421 4804421 1 - G A COAD 4804424 - 4804404 4804444 41 CGCCGCCACCACGGTGGCGCCACCGACGGCCCAGGGGAGAC CGCCGCCACCACGGTGGCGCCACTGACGGCCCAGGGGAGAC < 41bp 0.729369813517843 0.514684873010636 0.27435052 0.25622416 prediction 0.429369881014413 Functional Loss - CHRNE ENSG00000108556 CDS Human protein_coding chr17:4804424 chr17:4804421 synonymous SNV . 0 24 hm5C_associated_SNPs_85819 0 0 0 0 1 CHRNE chr17:4804485 3'AG 4804485 Downstream 65bp
chr5 32058118 32058118 1 + G C LUSC 32058117 + 32058097 32058137 41 TACCAGTGGGGGAGCCTCAGCGGGAGGTTCCGATGAAGGCA TACCAGTGGGGGAGCCTCAGCCGGAGGTTCCGATGAAGGCA < 41bp 0.714677497935663 0.414919445529366 0.9004587 0.90104556 prediction 0.429354995871327 Functional Loss - PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32058117 chr5:32058118 synonymous SNV . 0 22 hm5C_associated_SNPs_85821 0 0 0 0 1 PDZD2 chr5:32058209 5'GT 32058209 Upstream 92bp
chr6 41898488 41898488 1 + C T COAD 41898485 + 41898465 41898505 41 GCCGGAGGCCTGGACTGCAGCTGCCATGTACCAGGCCACCA GCCGGAGGCCTGGACTGCAGCTGTCATGTACCAGGCCACCA < 41bp 0.715959205378713 0.501284521431557 0.02852285 0.06598082 prediction 0.429349367894311 Functional Loss - BYSL ENSG00000112578 CDS Human protein_coding chr6:41898485 chr6:41898488 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_85823 0 0 1 0 1 BYSL chr6:41898506 5'GT 41898506 Upstream 19bp
chr16 28507283 28507283 1 + G A BRCA 28507280 + 28507260 28507300 41 GAAGCCAGGACAATCTCAGGCGGGGAGGAGGCTGAGACAGC GAAGCCAGGACAATCTCAGGCGGAGAGGAGGCTGAGACAGC < 41bp 0.810704511703192 0.59603089819677 0.6799695 0.42943043 prediction 0.429347227012844 Functional Loss - APOBR ENSG00000184730 CDS Human protein_coding chr16:28507280 chr16:28507283 synonymous SNV . 0 24 hm5C_associated_SNPs_85824 0 0 1 0 1 APOBR chr16:28507236 3'AG 28507236 Downstream 48bp
chr20 42249520 42249520 1 + G A UCEC 42249517 + 42249497 42249537 41 GATGTTGTTTTCCAGTGGCTCACGACAGGAGACATCCACCT GATGTTGTTTTCCAGTGGCTCACAACAGGAGACATCCACCT < 41bp 0.77086439422327 0.556199584251546 0.08289769 0.032034248 prediction 0.429329619943447 Functional Loss - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42249517 chr20:42249520 synonymous SNV . 0 24 hm5C_associated_SNPs_85830 0 0 1 0 1 IFT52 chr20:42249497 3'AG 42249497 Downstream 24bp
chr3 44906624 44906624 1 + C T UCEC 44906622 + 44906602 44906642 41 TCTGCGGACTCACCCTAATCCACAGGAAGCTCCCACCCACC TCTGCGGACTCACCCTAATCCATAGGAAGCTCCCACCCACC < 41bp 0.809454271654818 0.594796184668549 0.13565934 0.1706638 prediction 0.429316173972537 Functional Loss - TMEM42 ENSG00000169964 CDS Human protein_coding chr3:44906622 chr3:44906624 synonymous SNV . 0 23 hm5C_associated_SNPs_85835 0 0 1 0 1 TMEM42 chr3:44906532 3'AG 44906532 Downstream 93bp
chr11 65733393 65733393 1 + C T rs688862 65733390 + 65733370 65733410 41 GCCCGGGACCTGCAGGGCCTCACCGTGGAGCATGCCATTGA GCCCGGGACCTGCAGGGCCTCACTGTGGAGCATGCCATTGA < 41bp 0.714654800830901 0.490011690922944 0.21010095 0.077795535 prediction 0.429309601661802 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65733390 chr11:65733393 synonymous SNV . 0 24 hm5C_associated_SNPs_85837 0 0 1 0 2 SART1 chr11:65733358 3'AG 65733358 Downstream 36bp
chr11 65733393 65733393 1 + C T rs688862 65733390 + 65733370 65733410 41 GCCCGGGACCTGCAGGGCCTCACCGTGGAGCATGCCATTGA GCCCGGGACCTGCAGGGCCTCACTGTGGAGCATGCCATTGA < 41bp 0.714654800830901 0.490011690922944 0.21010095 0.077795535 prediction 0.429309601661802 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65733390 chr11:65733393 synonymous SNV . 0 24 hm5C_associated_SNPs_85837 0 0 1 0 2 SART1 chr11:65733457 5'GT 65733457 Upstream 65bp
chr19 41765475 41765475 1 + G A COAD 41765472 + 41765452 41765492 41 CCCTAGGTATGCCTTGATGTCGCGGTGCTGGGAGCTAAATC CCCTAGGTATGCCTTGATGTCGCAGTGCTGGGAGCTAAATC < 41bp 0.802827901845553 0.588175907911598 0.6248193 0.41426548 prediction 0.429303987867911 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41765472 chr19:41765475 nonsynonymous SNV 0.871 1 24 hm5C_associated_SNPs_85839 0 0 0 0 1 AXL chr19:41765458 3'AG 41765458 Downstream 18bp
chr8 105026790 105026790 1 + G T HNSC 105026787 + 105026767 105026807 41 CCCATCAAGTACTCCAGTCGCAGGACGAAGGGGCCGACAGC CCCATCAAGTACTCCAGTCGCAGTACGAAGGGGCCGACAGC < 41bp 0.714650193549929 0.371501652893379 0.8198291 0.15879285 prediction 0.429300387099858 Functional Loss - RIMS2 ENSG00000176406 CDS Human protein_coding chr8:105026787 chr8:105026790 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_85840 0 0 0 0 2 RIMS2 chr8:105026734 3'AG 105026734 Downstream 57bp
chr8 105026790 105026790 1 + G T HNSC 105026787 + 105026767 105026807 41 CCCATCAAGTACTCCAGTCGCAGGACGAAGGGGCCGACAGC CCCATCAAGTACTCCAGTCGCAGTACGAAGGGGCCGACAGC < 41bp 0.714650193549929 0.371501652893379 0.8198291 0.15879285 prediction 0.429300387099858 Functional Loss - RIMS2 ENSG00000176406 CDS Human protein_coding chr8:105026787 chr8:105026790 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_85840 0 0 0 0 2 RIMS2 chr8:105026843 5'GT 105026843 Upstream 54bp
chr19 4318403 4318403 1 + C T SKCM 4318401 + 4318381 4318421 41 AACCTGCGGGTGGATGATCTCTCCGTGGAGTGGGACGCTAT AACCTGCGGGTGGATGATCTCTTCGTGGAGTGGGACGCTAT < 41bp 0.869240922264192 0.654595373048417 0.36166543 0.1683366 prediction 0.42929109843155 Functional Loss - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4318401 chr19:4318403 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_85841 0 0 1 0 1 FSD1 chr19:4318502 5'GT 4318502 Upstream 100bp
chr11 64951035 64951035 1 + A T SKCM 64951031 + 64951011 64951051 41 TTCCGCACGGCCAGAGCTTCCAGAATGGCTATGCCGGCATC TTCCGCACGGCCAGAGCTTCCAGATTGGCTATGCCGGCATC < 41bp 0.890718934386113 0.676073645624702 0.41006416 0.4315599 prediction 0.429290577522821 Functional Loss - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64951031 chr11:64951035 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_85842 0 0 0 0 2 CAPN1 chr11:64950945 3'AG 64950945 Downstream 91bp
chr11 64951035 64951035 1 + A T SKCM 64951031 + 64951011 64951051 41 TTCCGCACGGCCAGAGCTTCCAGAATGGCTATGCCGGCATC TTCCGCACGGCCAGAGCTTCCAGATTGGCTATGCCGGCATC < 41bp 0.890718934386113 0.676073645624702 0.41006416 0.4315599 prediction 0.429290577522821 Functional Loss - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64951031 chr11:64951035 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_85842 0 0 0 0 2 CAPN1 chr11:64951063 5'GT 64951063 Upstream 29bp
chr14 74531573 74531573 1 - G A rs147004133 74531576 - 74531556 74531596 41 CCTTTGCCAATGTTCTCATTCACCGGCTCTCGATCCTCCTT CCTTTGCCAATGTTCTCATTCACTGGCTCTCGATCCTCCTT < 41bp 0.743152262886835 0.528507898181412 0.087697 0.06827456 prediction 0.429288729410845 Functional Loss - ALDH6A1 ENSG00000119711 CDS Human protein_coding chr14:74531576 chr14:74531573 synonymous SNV . 0 24 hm5C_associated_SNPs_85843 0 0 1 0 2 ALDH6A1 chr14:74531525 5'GT 74531525 Upstream 49bp
chr14 74531573 74531573 1 - G A rs147004133 74531576 - 74531556 74531596 41 CCTTTGCCAATGTTCTCATTCACCGGCTCTCGATCCTCCTT CCTTTGCCAATGTTCTCATTCACTGGCTCTCGATCCTCCTT < 41bp 0.743152262886835 0.528507898181412 0.087697 0.06827456 prediction 0.429288729410845 Functional Loss - ALDH6A1 ENSG00000119711 CDS Human protein_coding chr14:74531576 chr14:74531573 synonymous SNV . 0 24 hm5C_associated_SNPs_85843 0 0 1 0 2 ALDH6A1 chr14:74531623 3'AG 74531623 Downstream 51bp
chr16 24895397 24895397 1 + G C rs74015770 24895396 + 24895376 24895416 41 CCTGGCTGCTGTGATCTACACGGATGCCCTGCAGACGCTGA CCTGGCTGCTGTGATCTACACCGATGCCCTGCAGACGCTGA < 41bp 0.714643409881217 0.385434431540059 0.4023004 0.2847332 prediction 0.429286819762434 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24895396 chr16:24895397 synonymous SNV . 0 22 hm5C_associated_SNPs_85844 0 0 0 0 2 SLC5A11 chr16:24895372 3'AG 24895372 Downstream 26bp
chr16 24895397 24895397 1 + G C rs74015770 24895396 + 24895376 24895416 41 CCTGGCTGCTGTGATCTACACGGATGCCCTGCAGACGCTGA CCTGGCTGCTGTGATCTACACCGATGCCCTGCAGACGCTGA < 41bp 0.714643409881217 0.385434431540059 0.4023004 0.2847332 prediction 0.429286819762434 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24895396 chr16:24895397 synonymous SNV . 0 22 hm5C_associated_SNPs_85844 0 0 0 0 2 SLC5A11 chr16:24895452 5'GT 24895452 Upstream 56bp
chr21 17197314 17197314 1 + G A LUAD 17197311 + 17197291 17197331 41 GCACAGAAACAGAGAAATAACAAGAATTAAGAGGGAAGAGA GCACAGAAACAGAGAAATAACAAAAATTAAGAGGGAAGAGA < 41bp 0.724814330748705 0.510172036978561 0.90162134 0.8433214 prediction 0.429284587540289 Functional Loss - USP25 ENSG00000155313 CDS Human protein_coding chr21:17197311 chr21:17197314 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_85845 0 0 1 0 2 USP25 chr21:17197285 3'AG 17197285 Downstream 30bp
chr21 17197314 17197314 1 + G A LUAD 17197311 + 17197291 17197331 41 GCACAGAAACAGAGAAATAACAAGAATTAAGAGGGAAGAGA GCACAGAAACAGAGAAATAACAAAAATTAAGAGGGAAGAGA < 41bp 0.724814330748705 0.510172036978561 0.90162134 0.8433214 prediction 0.429284587540289 Functional Loss - USP25 ENSG00000155313 CDS Human protein_coding chr21:17197311 chr21:17197314 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_85845 0 0 1 0 2 USP25 chr21:17197380 5'GT 17197380 Upstream 67bp
chr11 66190663 66190663 1 + C T UCEC 66190661 + 66190641 66190681 41 CATGGTATGGACTGCTGCACCCCGAGGACCTGGCCCACGCT CATGGTATGGACTGCTGCACCCTGAGGACCTGGCCCACGCT < 41bp 0.714642193287261 0.426832153751352 0.16276795 0.07337728 prediction 0.429284386574521 Functional Loss - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66190661 chr11:66190663 synonymous SNV . 0 23 hm5C_associated_SNPs_85846 0 0 0 0 1 NPAS4 chr11:66190703 5'GT 66190703 Upstream 41bp
chr18 33709977 33709977 1 + G C rs8084554 33709973 + 33709953 33709993 41 GGGAGTCCTGAACTGGAGCTCTGGGCCCAGAGGACTTCTGG GGGAGTCCTGAACTGGAGCTCTGGCCCCAGAGGACTTCTGG < 41bp 0.867131796210861 0.65249159065858 0.9072586 0.45194516 prediction 0.429280411104561 Functional Loss - ELP2 ENSG00000134759 CDS Human protein_coding chr18:33709973 chr18:33709977 synonymous SNV . 0 25 hm5C_associated_SNPs_85848 0 0 1 0 1 ELP2 chr18:33710034 5'GT 33710034 Upstream 58bp
chr3 53891003 53891003 1 + A C rs137866081 53891002 + 53890982 53891022 41 GCACTATCATCGGGTTTTCTCAGGTGTTTGAGGTACTTTTT GCACTATCATCGGGTTTTCTCCGGTGTTTGAGGTACTTTTT < 41bp 0.850830549614367 0.636191899886556 0.96205294 0.95721626 prediction 0.429277299455622 Functional Loss - IL17RB ENSG00000056736 CDS Human protein_coding chr3:53891002 chr3:53891003 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_85850 0 0 1 0 1 IL17RB chr3:53891013 5'GT 53891013 Upstream 11bp
chr17 7762084 7762084 1 + C T GBM 7762081 + 7762061 7762101 41 TTATGAGGTGGGGCGGCTGTCTGCCAAGACCCGGAGCATCC TTATGAGGTGGGGCGGCTGTCTGTCAAGACCCGGAGCATCC < 41bp 0.738828833771015 0.524197872653457 0.014657319 0.020248443 prediction 0.429261922235117 Functional Loss - CYB5D1 ENSG00000182224 CDS Human protein_coding chr17:7762081 chr17:7762084 nonsynonymous SNV 0.993 0 24 hm5C_associated_SNPs_85855 0 0 1 0 1 CYB5D1 chr17:7762142 5'GT 7762142 Upstream 59bp
chr11 61197634 61197634 1 + G T LIHC 61197632 + 61197612 61197652 41 GGGGAAAATGGCGGTGTCTACAGTGTTCTCGACTTCGTCGC GGGGAAAATGGCGGTGTCTACATTGTTCTCGACTTCGTCGC < 41bp 0.91390318891908 0.699274196036095 0.32224447 0.059104204 prediction 0.42925798576597 Functional Loss - SDHAF2 ENSG00000167985;ENSG00000256591 CDS Human other chr11:61197632 chr11:61197634 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_85856 0 0 1 0 1 SDHAF2 chr11:61197654 5'GT 61197654 Upstream 21bp
chr2 231149108 231149108 1 + G A rs4972946 231149105 + 231149085 231149125 41 GCAGAATGAGAATGAGAAGGCAGGAAAACAGCCAACAAAAT GCAGAATGAGAATGAGAAGGCAGAAAAACAGCCAACAAAAT < 41bp 0.782053480887638 0.567425319431885 0.7928015 0.50405616 prediction 0.429256322911507 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231149105 chr2:231149108 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_85858 0 0 0 0 2 SP140 chr2:231149061 3'AG 231149061 Downstream 48bp
chr2 231149108 231149108 1 + G A rs4972946 231149105 + 231149085 231149125 41 GCAGAATGAGAATGAGAAGGCAGGAAAACAGCCAACAAAAT GCAGAATGAGAATGAGAAGGCAGAAAAACAGCCAACAAAAT < 41bp 0.782053480887638 0.567425319431885 0.7928015 0.50405616 prediction 0.429256322911507 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231149105 chr2:231149108 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_85858 0 0 0 0 2 SP140 chr2:231149126 5'GT 231149126 Upstream 19bp
chr12 66725005 66725005 1 + C T UCEC 66725002 + 66724982 66725022 41 CAGCACTGGCAGCATGTCTACACCGCCGTGACCAGGGGCCG CAGCACTGGCAGCATGTCTACACTGCCGTGACCAGGGGCCG < 41bp 0.728834336454441 0.514207089479973 0.10424784 0.1359607 prediction 0.429254493948934 Functional Loss - HELB ENSG00000127311 CDS Human protein_coding chr12:66725002 chr12:66725005 synonymous SNV . 0 24 hm5C_associated_SNPs_85861 0 0 0 0 1 HELB chr12:66724934 3'AG 66724934 Downstream 72bp
chr11 1856635 1856635 1 + G A SKCM 1856632 + 1856612 1856652 41 CGCCGCCACAGGAAGAAGCCCAGGGACAAGGAGTCCGTGGG CGCCGCCACAGGAAGAAGCCCAGAGACAAGGAGTCCGTGGG < 41bp 0.808709008500188 0.594090796829457 0.89341456 0.86212313 prediction 0.429236423341462 Functional Loss - SYT8 ENSG00000149043 CDS Human protein_coding chr11:1856632 chr11:1856635 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_85868 0 0 0 0 1 SYT8 chr11:1856689 5'GT 1856689 Upstream 55bp
chr1 168545879 168545879 1 + A C UCEC 168545875 + 168545855 168545895 41 CAGCTCAGCAGGACCTCAGCCATGAGACTTCTCATCCTGGC CAGCTCAGCAGGACCTCAGCCATGCGACTTCTCATCCTGGC < 41bp 0.71461641597169 0.460229145351557 0.39931613 0.32582343 prediction 0.42923283194338 Functional Loss - XCL1 ENSG00000143184 CDS Human protein_coding chr1:168545875 chr1:168545879 synonymous SNV . 0 25 hm5C_associated_SNPs_85871 0 0 0 0 1 XCL1 chr1:168545936 5'GT 168545936 Upstream 58bp
chr1 210796934 210796934 1 + C T HNSC 210796932 + 210796912 210796952 41 GCCCTTGCTTCTTGTTCCACCTCGATGCTGATCCTGTCCAA GCCCTTGCTTCTTGTTCCACCTTGATGCTGATCCTGTCCAA < 41bp 0.866039903243228 0.651426501812996 0.5320618 0.07379022 prediction 0.429226802860464 Functional Loss - HHAT ENSG00000054392 CDS Human protein_coding chr1:210796932 chr1:210796934 nonsynonymous SNV 0.932 2 23 hm5C_associated_SNPs_85876 0 0 0 0 2 HHAT chr1:210796870 3'AG 210796870 Downstream 65bp
chr1 210796934 210796934 1 + C T HNSC 210796932 + 210796912 210796952 41 GCCCTTGCTTCTTGTTCCACCTCGATGCTGATCCTGTCCAA GCCCTTGCTTCTTGTTCCACCTTGATGCTGATCCTGTCCAA < 41bp 0.866039903243228 0.651426501812996 0.5320618 0.07379022 prediction 0.429226802860464 Functional Loss - HHAT ENSG00000054392 CDS Human protein_coding chr1:210796932 chr1:210796934 nonsynonymous SNV 0.932 2 23 hm5C_associated_SNPs_85876 0 0 0 0 2 HHAT chr1:210797014 5'GT 210797014 Upstream 81bp
chr12 94620960 94620960 1 + A T LUAD 94620956 + 94620936 94620976 41 AGTGGCTGTCGAGAAGACATCAGGAGGAGGAAGACCCAAGG AGTGGCTGTCGAGAAGACATCAGGTGGAGGAAGACCCAAGG < 41bp 0.878543145265385 0.663930879263413 0.89172584 0.7982559 prediction 0.429224532003944 Functional Loss - PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94620956 chr12:94620960 synonymous SNV . 0 25 hm5C_associated_SNPs_85878 0 0 1 0 2 PLXNC1 chr12:94620925 3'AG 94620925 Downstream 36bp
chr12 94620960 94620960 1 + A T LUAD 94620956 + 94620936 94620976 41 AGTGGCTGTCGAGAAGACATCAGGAGGAGGAAGACCCAAGG AGTGGCTGTCGAGAAGACATCAGGTGGAGGAAGACCCAAGG < 41bp 0.878543145265385 0.663930879263413 0.89172584 0.7982559 prediction 0.429224532003944 Functional Loss - PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94620956 chr12:94620960 synonymous SNV . 0 25 hm5C_associated_SNPs_85878 0 0 1 0 2 PLXNC1 chr12:94621011 5'GT 94621011 Upstream 52bp
chr16 3707753 3707753 1 + C T UCEC 3707751 + 3707731 3707771 41 GCAGGGATGCTGCTCCGAGGCGCCGTTGTTCCCGACTCGGC GCAGGGATGCTGCTCCGAGGCGTCGTTGTTCCCGACTCGGC < 41bp 0.835708439398112 0.621097668654633 0.12429154 0.15359786 prediction 0.429221541486957 Functional Loss - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707751 chr16:3707753 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_85879 0 0 0 0 2 DNASE1 chr16:3707721 3'AG 3707721 Downstream 33bp
chr16 3707753 3707753 1 + C T UCEC 3707751 + 3707731 3707771 41 GCAGGGATGCTGCTCCGAGGCGCCGTTGTTCCCGACTCGGC GCAGGGATGCTGCTCCGAGGCGTCGTTGTTCCCGACTCGGC < 41bp 0.835708439398112 0.621097668654633 0.12429154 0.15359786 prediction 0.429221541486957 Functional Loss - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707751 chr16:3707753 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_85879 0 0 0 0 2 DNASE1 chr16:3707817 5'GT 3707817 Upstream 65bp
chr4 156698768 156698768 1 + G T LUAD 156698765 + 156698745 156698785 41 ATGATACAATCTTGCGTGTCCTGGGCTCTAATGTCAGAGAA ATGATACAATCTTGCGTGTCCTGTGCTCTAATGTCAGAGAA < 41bp 0.714608165527992 0.333919828725097 0.2608604 0.058037013 prediction 0.429216331055984 Functional Loss - GUCY1B3 ENSG00000061918 CDS Human protein_coding chr4:156698765 chr4:156698768 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_85881 0 0 0 0 2 GUCY1B3 chr4:156698676 3'AG 156698676 Downstream 93bp
chr4 156698768 156698768 1 + G T LUAD 156698765 + 156698745 156698785 41 ATGATACAATCTTGCGTGTCCTGGGCTCTAATGTCAGAGAA ATGATACAATCTTGCGTGTCCTGTGCTCTAATGTCAGAGAA < 41bp 0.714608165527992 0.333919828725097 0.2608604 0.058037013 prediction 0.429216331055984 Functional Loss - GUCY1B3 ENSG00000061918 CDS Human protein_coding chr4:156698765 chr4:156698768 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_85881 0 0 0 0 2 GUCY1B3 chr4:156698794 5'GT 156698794 Upstream 27bp
chr3 142430734 142430734 1 + G A UCEC 142430731 + 142430711 142430751 41 AAGATACGCCATTTCAGTTGCTCGAAAGATCGGTGCCCGGA AAGATACGCCATTTCAGTTGCTCAAAAGATCGGTGCCCGGA < 41bp 0.73000583473997 0.51540005974796 0.18800029 0.28505605 prediction 0.429211549984019 Functional Loss - PLS1 ENSG00000120756 CDS Human protein_coding chr3:142430731 chr3:142430734 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_85883 0 0 0 0 1 PLS1 chr3:142430714 3'AG 142430714 Downstream 21bp
chr12 53512991 53512991 1 + C T STAD 53512988 + 53512968 53513008 41 GCCAACATGAGCCGAGAGCCCTTCAGCACCCGTGCCCTGGT GCCAACATGAGCCGAGAGCCCTTTAGCACCCGTGCCCTGGT < 41bp 0.714604993813019 0.495307882037792 0.41088885 0.16144124 prediction 0.429209987626038 Functional Loss - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53512988 chr12:53512991 synonymous SNV . 0 24 hm5C_associated_SNPs_85885 0 0 0 0 2 SOAT2 chr12:53512908 3'AG 53512908 Downstream 84bp
chr12 53512991 53512991 1 + C T STAD 53512988 + 53512968 53513008 41 GCCAACATGAGCCGAGAGCCCTTCAGCACCCGTGCCCTGGT GCCAACATGAGCCGAGAGCCCTTTAGCACCCGTGCCCTGGT < 41bp 0.714604993813019 0.495307882037792 0.41088885 0.16144124 prediction 0.429209987626038 Functional Loss - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53512988 chr12:53512991 synonymous SNV . 0 24 hm5C_associated_SNPs_85885 0 0 0 0 2 SOAT2 chr12:53513037 5'GT 53513037 Upstream 47bp
chr16 29820923 29820923 1 + C T COAD 29820921 + 29820901 29820941 41 GGACCACGGGCTCCAGGCCCCGCGGGCTGACCGCATCCTGT GGACCACGGGCTCCAGGCCCCGTGGGCTGACCGCATCCTGT < 41bp 0.817771318195339 0.603167075293238 0.86359656 0.8569953 prediction 0.429208485804202 Functional Loss - MAZ ENSG00000103495 CDS Human protein_coding chr16:29820921 chr16:29820923 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_85886 0 0 1 0 1 MAZ chr16:29820861 3'AG 29820861 Downstream 63bp
chrX 117762174 117762174 1 + G T UCEC 117762171 + 117762151 117762191 41 TGGAATTAAGAGAGAAGATTCAAGAGGTTCCCTCATCCCAG TGGAATTAAGAGAGAAGATTCAATAGGTTCCCTCATCCCAG < 41bp 0.714603886294526 0.339663261291301 0.86836976 0.40439987 prediction 0.429207772589053 Functional Loss - DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117762171 chrX:117762174 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_85887 0 0 0 0 2 DOCK11 chrX:117762126 3'AG 117762126 Downstream 49bp
chrX 117762174 117762174 1 + G T UCEC 117762171 + 117762151 117762191 41 TGGAATTAAGAGAGAAGATTCAAGAGGTTCCCTCATCCCAG TGGAATTAAGAGAGAAGATTCAATAGGTTCCCTCATCCCAG < 41bp 0.714603886294526 0.339663261291301 0.86836976 0.40439987 prediction 0.429207772589053 Functional Loss - DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117762171 chrX:117762174 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_85887 0 0 0 0 2 DOCK11 chrX:117762235 5'GT 117762235 Upstream 62bp
chr12 66638963 66638963 1 + G A SKCM 66638960 + 66638940 66638980 41 TAAGAAAGTGCCTCCCTGCCCTCGGAATTTCTCTGCCAAGC TAAGAAAGTGCCTCCCTGCCCTCAGAATTTCTCTGCCAAGC < 41bp 0.714603634334523 0.468220077747003 0.056451797 0.046963573 prediction 0.429207268669047 Functional Loss - IRAK3 ENSG00000090376 CDS Human protein_coding chr12:66638960 chr12:66638963 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_85888 0 0 0 0 2 IRAK3 chr12:66638878 3'AG 66638878 Downstream 86bp
chr12 66638963 66638963 1 + G A SKCM 66638960 + 66638940 66638980 41 TAAGAAAGTGCCTCCCTGCCCTCGGAATTTCTCTGCCAAGC TAAGAAAGTGCCTCCCTGCCCTCAGAATTTCTCTGCCAAGC < 41bp 0.714603634334523 0.468220077747003 0.056451797 0.046963573 prediction 0.429207268669047 Functional Loss - IRAK3 ENSG00000090376 CDS Human protein_coding chr12:66638960 chr12:66638963 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_85888 0 0 0 0 2 IRAK3 chr12:66639042 5'GT 66639042 Upstream 80bp
chr9 139745229 139745229 1 + C T UCEC 139745227 + 139745207 139745247 41 GCCTATGGTCCTGCCCAGCACGCCATTTCAACTGAGAAAAT GCCTATGGTCCTGCCCAGCACGTCATTTCAACTGAGAAAAT < 41bp 0.815653533143359 0.601053458158918 0.07903728 0.09666556 prediction 0.429200149968882 Functional Loss - PHPT1 ENSG00000054148 CDS Human protein_coding chr9:139745227 chr9:139745229 nonsynonymous SNV 0.531 0 23 hm5C_associated_SNPs_85890 0 0 1 0 1 PHPT1 chr9:139745207 3'AG 139745207 Downstream 23bp
chr8 67066340 67066340 1 + C T UCEC 67066337 + 67066317 67066357 41 AGAGTCTGAAACTCCAGTCCCTGCAGCAGCAGAAACTGCGG AGAGTCTGAAACTCCAGTCCCTGTAGCAGCAGAAACTGCGG < 41bp 0.764622876774767 0.550025969422595 0.5929958 0.412422 prediction 0.429193814704345 Functional Loss - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67066337 chr8:67066340 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_85892 0 0 0 0 1 TRIM55 chr8:67066282 3'AG 67066282 Downstream 59bp
chr20 60831215 60831215 1 + G T LIHC 60831212 + 60831192 60831232 41 TTCAGTAGAAGAGCACATGTCAGGGGCAGTGGAGGCTGGCT TTCAGTAGAAGAGCACATGTCAGTGGCAGTGGAGGCTGGCT < 41bp 0.714593954292747 0.431683350805864 0.9119025 0.29523933 prediction 0.429187908585495 Functional Loss - OSBPL2 ENSG00000130703 UTR5 Human protein_coding chr20:60831212 chr20:60831215 . . 0 24 hm5C_associated_SNPs_85893 0 0 1 0 1 OSBPL2 chr20:60831277 5'GT 60831277 Upstream 63bp
chr12 7868817 7868817 1 + G A LUSC 7868814 + 7868794 7868834 41 CATGAAAGAAGACCAACAAACAAGGAGCCTAAGGGAGTTAA CATGAAAGAAGACCAACAAACAAAGAGCCTAAGGGAGTTAA < 41bp 0.722754681951552 0.508161005366921 0.78333116 0.38835618 prediction 0.429187353169261 Functional Loss - DPPA3 ENSG00000187569 CDS Human protein_coding chr12:7868814 chr12:7868817 synonymous SNV . 0 24 hm5C_associated_SNPs_85894 0 0 0 0 2 DPPA3 chr12:7868794 3'AG 7868794 Downstream 24bp
chr12 7868817 7868817 1 + G A LUSC 7868814 + 7868794 7868834 41 CATGAAAGAAGACCAACAAACAAGGAGCCTAAGGGAGTTAA CATGAAAGAAGACCAACAAACAAAGAGCCTAAGGGAGTTAA < 41bp 0.722754681951552 0.508161005366921 0.78333116 0.38835618 prediction 0.429187353169261 Functional Loss - DPPA3 ENSG00000187569 CDS Human protein_coding chr12:7868814 chr12:7868817 synonymous SNV . 0 24 hm5C_associated_SNPs_85894 0 0 0 0 2 DPPA3 chr12:7868835 5'GT 7868835 Upstream 19bp
chr9 116018469 116018469 1 + C T SKCM 116018467 + 116018447 116018487 41 ATGGGGATGAGCTATATGGACTCCAACAGTACCATGCAACC ATGGGGATGAGCTATATGGACTTCAACAGTACCATGCAACC < 41bp 0.714593594173501 0.41798695837147 0.9400834 0.014921874 prediction 0.429187188347002 Functional Loss - SLC31A1 ENSG00000136868 CDS Human protein_coding chr9:116018467 chr9:116018469 nonsynonymous SNV 0.015 0 23 hm5C_associated_SNPs_85895 0 0 1 0 2 SLC31A1 chr9:116018394 3'AG 116018394 Downstream 76bp
chr9 116018469 116018469 1 + C T SKCM 116018467 + 116018447 116018487 41 ATGGGGATGAGCTATATGGACTCCAACAGTACCATGCAACC ATGGGGATGAGCTATATGGACTTCAACAGTACCATGCAACC < 41bp 0.714593594173501 0.41798695837147 0.9400834 0.014921874 prediction 0.429187188347002 Functional Loss - SLC31A1 ENSG00000136868 CDS Human protein_coding chr9:116018467 chr9:116018469 nonsynonymous SNV 0.015 0 23 hm5C_associated_SNPs_85895 0 0 1 0 2 SLC31A1 chr9:116018557 5'GT 116018557 Upstream 89bp
chr17 27065189 27065189 1 + G A LGG 27065186 + 27065166 27065206 41 GCCACAGCCCCAGTTCATCTCGCGTTTCCTGGAGGGCCAGT GCCACAGCCCCAGTTCATCTCGCATTTCCTGGAGGGCCAGT < 41bp 0.809674194088065 0.595082057267865 0.7599019 0.29066873 prediction 0.4291842736404 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27065186 chr17:27065189 nonsynonymous SNV 0.984 4 24 hm5C_associated_SNPs_85897 1 0 1 0 2 NEK8 chr17:27065113 3'AG 27065113 Downstream 77bp
chr17 27065189 27065189 1 + G A LGG 27065186 + 27065166 27065206 41 GCCACAGCCCCAGTTCATCTCGCGTTTCCTGGAGGGCCAGT GCCACAGCCCCAGTTCATCTCGCATTTCCTGGAGGGCCAGT < 41bp 0.809674194088065 0.595082057267865 0.7599019 0.29066873 prediction 0.4291842736404 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27065186 chr17:27065189 nonsynonymous SNV 0.984 4 24 hm5C_associated_SNPs_85897 1 0 1 0 2 NEK8 chr17:27065263 5'GT 27065263 Upstream 75bp
chr16 19501774 19501774 1 + C T SKCM 19501771 + 19501751 19501791 41 GGTCTGCCTCTCTTCATTCACTCCATCTACAGCTGGATCGA GGTCTGCCTCTCTTCATTCACTCTATCTACAGCTGGATCGA < 41bp 0.7504459079481 0.535867729223895 0.95479214 0.88652354 prediction 0.429156357448411 Functional Loss - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19501771 chr16:19501774 synonymous SNV . 0 24 hm5C_associated_SNPs_85902 0 0 0 0 1 TMC5 chr16:19501717 3'AG 19501717 Downstream 58bp
chr5 76646927 76646927 1 + G A SKCM 76646924 + 76646904 76646944 41 TTACTATGCCAGACGGAAATCCGGGGACAGCATCCAACAGC TTACTATGCCAGACGGAAATCCGAGGACAGCATCCAACAGC < 41bp 0.714576713403979 0.473892726027021 0.93099225 0.9062285 prediction 0.429153426807958 Functional Loss - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76646924 chr5:76646927 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_85903 0 0 0 0 1 PDE8B chr5:76646890 3'AG 76646890 Downstream 38bp
chr15 69689856 69689856 1 + G A UCEC 69689853 + 69689833 69689873 41 TCTGTAAGGTGATTCGTGTCCTCGCCTTTGCTTATCCGTAC TCTGTAAGGTGATTCGTGTCCTCACCTTTGCTTATCCGTAC < 41bp 0.714575488607776 0.471986411197356 0.039310724 0.043772817 prediction 0.429150977215553 Functional Loss - PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69689853 chr15:69689856 nonsynonymous SNV 0.654 3 24 hm5C_associated_SNPs_85904 0 0 1 0 1 PAQR5 chr15:69689807 3'AG 69689807 Downstream 50bp
chrX 2644353 2644353 1 + G A rs146973165 2644350 + 2644330 2644370 41 GTGGGGGCTGTCGTGGTCGCCGTGGCTGGAGCCATCTCTAG GTGGGGGCTGTCGTGGTCGCCGTAGCTGGAGCCATCTCTAG < 41bp 0.806487786757303 0.591924392603366 0.8984914 0.90241575 prediction 0.429126788307875 Functional Loss - CD99 ENSG00000002586 CDS Human protein_coding chrX:2644350 chrX:2644353 synonymous SNV . 0 24 hm5C_associated_SNPs_85909 0 0 1 0 2 CD99 chrX:2644301 3'AG 2644301 Downstream 53bp
chrX 2644353 2644353 1 + G A rs146973165 2644350 + 2644330 2644370 41 GTGGGGGCTGTCGTGGTCGCCGTGGCTGGAGCCATCTCTAG GTGGGGGCTGTCGTGGTCGCCGTAGCTGGAGCCATCTCTAG < 41bp 0.806487786757303 0.591924392603366 0.8984914 0.90241575 prediction 0.429126788307875 Functional Loss - CD99 ENSG00000002586 CDS Human protein_coding chrX:2644350 chrX:2644353 synonymous SNV . 0 24 hm5C_associated_SNPs_85909 0 0 1 0 2 CD99 chrX:2644414 5'GT 2644414 Upstream 62bp
chr8 22442629 22442629 1 + C T SKCM 22442627 + 22442607 22442647 41 GGCCGGCAGCCCCTTCTCACCACCACCCTCTAGCAGCTCCC GGCCGGCAGCCCCTTCTCACCATCACCCTCTAGCAGCTCCC < 41bp 0.714562192079594 0.441719551309301 0.02510479 0.014594823 prediction 0.429124384159188 Functional Loss - PDLIM2 ENSG00000120913 CDS Human protein_coding chr8:22442627 chr8:22442629 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_85911 0 0 0 0 2 PDLIM2 chr8:22442530 3'AG 22442530 Downstream 100bp
chr8 22442629 22442629 1 + C T SKCM 22442627 + 22442607 22442647 41 GGCCGGCAGCCCCTTCTCACCACCACCCTCTAGCAGCTCCC GGCCGGCAGCCCCTTCTCACCATCACCCTCTAGCAGCTCCC < 41bp 0.714562192079594 0.441719551309301 0.02510479 0.014594823 prediction 0.429124384159188 Functional Loss - PDLIM2 ENSG00000120913 CDS Human protein_coding chr8:22442627 chr8:22442629 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_85911 0 0 0 0 2 PDLIM2 chr8:22442675 5'GT 22442675 Upstream 47bp
chr11 111414665 111414665 1 + G A LUAD 111414662 + 111414642 111414682 41 CTCTAGGGCAGCCAGTCTGCCGGGGAGGGACACAGAGGCCT CTCTAGGGCAGCCAGTCTGCCGGAGAGGGACACAGAGGCCT < 41bp 0.78256398426697 0.568003316844934 0.8938019 0.8444008 prediction 0.429121334844071 Functional Loss - LAYN ENSG00000204381 CDS Human protein_coding chr11:111414662 chr11:111414665 nonsynonymous SNV 0.975 0 24 hm5C_associated_SNPs_85914 0 0 0 0 1 LAYN chr11:111414648 3'AG 111414648 Downstream 18bp
chr17 4500559 4500559 1 + C T rs8073566 4500556 + 4500536 4500576 41 TTCTTCCCCGATGCCTTTGACTACAACTCCCTGAGCCCCAC TTCTTCCCCGATGCCTTTGACTATAACTCCCTGAGCCCCAC < 41bp 0.714558088449614 0.489257006380296 0.30607712 0.122712225 prediction 0.429116176899229 Functional Loss - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4500556 chr17:4500559 synonymous SNV . 0 24 hm5C_associated_SNPs_85916 0 0 0 0 2 SMTNL2 chr17:4500467 3'AG 4500467 Downstream 93bp
chr17 4500559 4500559 1 + C T rs8073566 4500556 + 4500536 4500576 41 TTCTTCCCCGATGCCTTTGACTACAACTCCCTGAGCCCCAC TTCTTCCCCGATGCCTTTGACTATAACTCCCTGAGCCCCAC < 41bp 0.714558088449614 0.489257006380296 0.30607712 0.122712225 prediction 0.429116176899229 Functional Loss - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4500556 chr17:4500559 synonymous SNV . 0 24 hm5C_associated_SNPs_85916 0 0 0 0 2 SMTNL2 chr17:4500618 5'GT 4500618 Upstream 60bp
chr12 113722539 113722539 1 + C T SKCM 113722536 + 113722516 113722556 41 CTTACAGGTGGGAACTTCTTCTCCAAGCACGTGCCCTGGAG CTTACAGGTGGGAACTTCTTCTCTAAGCACGTGCCCTGGAG < 41bp 0.7876364250671 0.573085968799464 0.9614347 0.938877 prediction 0.42910091253527 Functional Loss - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113722536 chr12:113722539 synonymous SNV . 0 24 hm5C_associated_SNPs_85920 0 0 1 0 2 TPCN1 chr12:113722523 3'AG 113722523 Downstream 17bp
chr12 113722539 113722539 1 + C T SKCM 113722536 + 113722516 113722556 41 CTTACAGGTGGGAACTTCTTCTCCAAGCACGTGCCCTGGAG CTTACAGGTGGGAACTTCTTCTCTAAGCACGTGCCCTGGAG < 41bp 0.7876364250671 0.573085968799464 0.9614347 0.938877 prediction 0.42910091253527 Functional Loss - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113722536 chr12:113722539 synonymous SNV . 0 24 hm5C_associated_SNPs_85920 0 0 1 0 2 TPCN1 chr12:113722576 5'GT 113722576 Upstream 38bp
chrX 74494400 74494400 1 + G A BLCA 74494397 + 74494377 74494417 41 CCTAGAGGACTGCGAACTCTCCCGGCAGATCGGGGCGCAGC CCTAGAGGACTGCGAACTCTCCCAGCAGATCGGGGCGCAGC < 41bp 0.791190938620227 0.576642367728448 0.63783395 0.16078493 prediction 0.429097141783557 Functional Loss - UPRT ENSG00000094841 CDS Human protein_coding chrX:74494397 chrX:74494400 nonsynonymous SNV 0.585 0 24 hm5C_associated_SNPs_85921 0 0 0 0 1 UPRT chrX:74494475 5'GT 74494475 Upstream 76bp
chr6 153073417 153073417 1 + C T BLCA 153073415 + 153073395 153073435 41 TTTACAGGGCACCTTCTGCTCTCAGGTAAGTTCCCTTTCAA TTTACAGGGCACCTTCTGCTCTTAGGTAAGTTCCCTTTCAA < 41bp 0.833888611145534 0.619341533059612 0.07641333 0.107893676 prediction 0.429094156171845 Functional Loss - VIP ENSG00000146469 CDS Human protein_coding chr6:153073415 chr6:153073417 synonymous SNV . 0 23 hm5C_associated_SNPs_85923 0 0 0 0 1 VIP chr6:153073419 5'GT 153073419 Upstream 3bp
chr1 224553593 224553593 1 + G T UCEC 224553591 + 224553571 224553611 41 TCCATTGCAGTGGGTAATTCCAGAATTGATTGGCCATACCA TCCATTGCAGTGGGTAATTCCATAATTGATTGGCCATACCA < 41bp 0.714541628678234 0.459589213257734 0.36120695 0.18197191 prediction 0.429083257356468 Functional Loss - CNIH4 ENSG00000143771 CDS Human protein_coding chr1:224553591 chr1:224553593 stopgain 0.998 1 23 hm5C_associated_SNPs_85925 0 0 1 0 1 CNIH4 chr1:224553581 3'AG 224553581 Downstream 13bp
chr19 10394884 10394884 1 + G A ESCA 10394881 + 10394861 10394901 41 ACCTATGGCAACGACTCCTTCTCGGCCAAGGCCTCAGTCAG ACCTATGGCAACGACTCCTTCTCAGCCAAGGCCTCAGTCAG < 41bp 0.817045375797846 0.602505224220479 0.12363848 0.0062405765 prediction 0.429080303154733 Functional Loss - ICAM1 ENSG00000090339 CDS Human protein_coding chr19:10394881 chr19:10394884 synonymous SNV . 0 24 hm5C_associated_SNPs_85927 0 0 1 0 1 ICAM1 chr19:10394805 3'AG 10394805 Downstream 80bp
chr15 50519219 50519219 1 + C T OV 50519216 + 50519196 50519236 41 TTGCAAAATCACACAACTTACACCATTTAATGGCTATGCTG TTGCAAAATCACACAACTTACACTATTTAATGGCTATGCTG < 41bp 0.714539460939999 0.489068103838085 0.018161386 0.029892087 prediction 0.429078921879999 Functional Loss - SLC27A2 ENSG00000140284 CDS Human protein_coding chr15:50519216 chr15:50519219 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_85929 0 0 1 0 1 SLC27A2 chr15:50519177 3'AG 50519177 Downstream 43bp
chr6 74073352 74073352 1 + G A SKCM 74073349 + 74073329 74073369 41 CAGCGGTCTTCAATAGAAGTCCGGGAGGCCGGGACGCAGCG CAGCGGTCTTCAATAGAAGTCCGAGAGGCCGGGACGCAGCG < 41bp 0.805863866954031 0.591329942857914 0.8694987 0.40536377 prediction 0.429067848192233 Functional Loss - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74073349 chr6:74073352 synonymous SNV . 0 24 hm5C_associated_SNPs_85932 0 0 0 0 1 KHDC3L chr6:74073279 3'AG 74073279 Downstream 74bp
chr18 33780267 33780267 1 + G A GBM 33780264 + 33780244 33780284 41 GCAGGAGAAGACTTCTACATCCCGAGGCAGTCGGTAGCTCA GCAGGAGAAGACTTCTACATCCCAAGGCAGTCGGTAGCTCA < 41bp 0.80619072117734 0.591659495833705 0.3536825 0.07862115 prediction 0.429062450687269 Functional Loss - MOCOS ENSG00000075643 CDS Human protein_coding chr18:33780264 chr18:33780267 synonymous SNV . 0 24 hm5C_associated_SNPs_85933 0 0 1 0 1 MOCOS chr18:33780287 5'GT 33780287 Upstream 21bp
chr4 6989051 6989051 1 + G C rs181185690 6989050 + 6989030 6989070 41 GGGCATGGAGCCTCCGGCCGCGCGCCTCTAAGGCCCCGGCG GGGCATGGAGCCTCCGGCCGCCCGCCTCTAAGGCCCCGGCG < 41bp 0.714528553816533 0.410130171639283 0.20691764 0.043482035 prediction 0.429057107633066 Functional Loss - TBC1D14 ENSG00000132405 UTR5 Human protein_coding chr4:6989050 chr4:6989051 . . 0 22 hm5C_associated_SNPs_85934 0 0 1 0 1 TBC1D14 chr4:6989076 5'GT 6989076 Upstream 26bp
chr17 44952698 44952698 1 + G A SKCM 44952695 + 44952675 44952715 41 AGGAAACAAGGACCTGCGGGCACGGGCAGACGCCCACAATA AGGAAACAAGGACCTGCGGGCACAGGCAGACGCCCACAATA < 41bp 0.808367983700744 0.593839944306547 0.5775575 0.41941392 prediction 0.429056078788394 Functional Loss - WNT9B ENSG00000158955 CDS Human protein_coding chr17:44952695 chr17:44952698 nonsynonymous SNV 0.955 1 24 hm5C_associated_SNPs_85935 0 0 0 0 1 WNT9B chr17:44952732 5'GT 44952732 Upstream 35bp
chr2 169681219 169681219 1 + G A SKCM 169681216 + 169681196 169681236 41 CTGAGCAAAGCATTACAGAACACGAGAAAAAGGTAAGTATT CTGAGCAAAGCATTACAGAACACAAGAAAAAGGTAAGTATT < 41bp 0.735694231594036 0.521167576533504 0.3946033 0.29828858 prediction 0.429053310121064 Functional Loss - NOSTRIN ENSG00000163072 CDS Human protein_coding chr2:169681216 chr2:169681219 synonymous SNV . 0 24 hm5C_associated_SNPs_85936 0 0 1 0 2 NOSTRIN chr2:169681144 3'AG 169681144 Downstream 76bp
chr2 169681219 169681219 1 + G A SKCM 169681216 + 169681196 169681236 41 CTGAGCAAAGCATTACAGAACACGAGAAAAAGGTAAGTATT CTGAGCAAAGCATTACAGAACACAAGAAAAAGGTAAGTATT < 41bp 0.735694231594036 0.521167576533504 0.3946033 0.29828858 prediction 0.429053310121064 Functional Loss - NOSTRIN ENSG00000163072 CDS Human protein_coding chr2:169681216 chr2:169681219 synonymous SNV . 0 24 hm5C_associated_SNPs_85936 0 0 1 0 2 NOSTRIN chr2:169681227 5'GT 169681227 Upstream 9bp
chr16 2086358 2086358 1 + C T HNSC 2086356 + 2086336 2086376 41 GCCCCTGAGGGAGCTGCGCCCTCGGCTCTGCCACCTGCGAA GCCCCTGAGGGAGCTGCGCCCTTGGCTCTGCCACCTGCGAA < 41bp 0.837721612363323 0.623195844820541 0.47424507 0.38996243 prediction 0.429051535085564 Functional Loss - SLC9A3R2 ENSG00000065054 CDS Human protein_coding chr16:2086356 chr16:2086358 nonsynonymous SNV 0.972 4 23 hm5C_associated_SNPs_85937 0 0 1 0 1 SLC9A3R2 chr16:2086325 3'AG 2086325 Downstream 34bp
chr11 66247857 66247857 1 + G C rs201142853 66247853 + 66247833 66247873 41 CCCGAGGCCAGGCAGTTGGCCAAGGGGGGCGGGGTTCGCAG CCCGAGGCCAGGCAGTTGGCCAAGCGGGGCGGGGTTCGCAG < 41bp 0.782894064991128 0.568369208872572 0.9096689 0.8936858 prediction 0.429049712237111 Functional Loss - DPP3 ENSG00000254986 UTR5 Human protein_coding chr11:66247853 chr11:66247857 . . 0 25 hm5C_associated_SNPs_85938 0 0 0 0 1 DPP3 chr11:66247936 5'GT 66247936 Upstream 80bp
chr9 75309495 75309495 1 + G A KICH 75309492 + 75309472 75309512 41 GGAGGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGAC GGAGGTGGAAGATAAGCTACCTCAAAGAGAGAGCTTGAGAC < 41bp 0.75128988515483 0.536766472223214 0.3691743 0.09191391 prediction 0.429046825863231 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309492 chr9:75309495 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_85939 0 0 0 9 2 TMC1 chr9:75309447 3'AG 75309447 Downstream 49bp
chr9 75309495 75309495 1 + G A KICH 75309492 + 75309472 75309512 41 GGAGGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGAC GGAGGTGGAAGATAAGCTACCTCAAAGAGAGAGCTTGAGAC < 41bp 0.75128988515483 0.536766472223214 0.3691743 0.09191391 prediction 0.429046825863231 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309492 chr9:75309495 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_85939 0 0 0 9 2 TMC1 chr9:75309459 3'AG 75309459 Downstream 37bp
chr19 14139196 14139196 1 + C T rs79665112 14139194 + 14139174 14139214 41 GACGATCAGACATCCTGGCCCACGAGGCTATGGGTGAGGCT GACGATCAGACATCCTGGCCCATGAGGCTATGGGTGAGGCT < 41bp 0.805091407303986 0.590568201990979 0.17121777 0.19633216 prediction 0.429046410626014 Functional Loss - RLN3 ENSG00000171136 CDS Human protein_coding chr19:14139194 chr19:14139196 synonymous SNV . 0 23 hm5C_associated_SNPs_85940 0 0 0 0 1 RLN3 chr19:14139206 5'GT 14139206 Upstream 11bp
chr1 202096931 202096931 1 + G A UCEC 202096928 + 202096908 202096948 41 CTGGGCATTGACCGCTTCCACGTGGCCACCAGCACCCTGCC CTGGGCATTGACCGCTTCCACGTAGCCACCAGCACCCTGCC < 41bp 0.820821901652426 0.606300176614508 0.9080536 0.50293195 prediction 0.429043450075836 Functional Loss - GPR37L1 ENSG00000170075 CDS Human protein_coding chr1:202096928 chr1:202096931 synonymous SNV . 0 24 hm5C_associated_SNPs_85942 0 0 0 0 1 GPR37L1 chr1:202096869 3'AG 202096869 Downstream 63bp
chr2 144381752 144381752 1 + A C UCEC 144381751 + 144381731 144381771 41 TGGGAGGACATCCACGTTGTCACCGGAGCACTGAAGATGTT TGGGAGGACATCCACGTTGTCCCCGGAGCACTGAAGATGTT < 41bp 0.755089134508834 0.540567990193183 0.7545595 0.33998895 prediction 0.429042288631302 Functional Loss - ARHGAP15 ENSG00000075884 CDS Human protein_coding chr2:144381751 chr2:144381752 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_85943 0 0 0 0 2 ARHGAP15 chr2:144381702 3'AG 144381702 Downstream 51bp
chr2 144381752 144381752 1 + A C UCEC 144381751 + 144381731 144381771 41 TGGGAGGACATCCACGTTGTCACCGGAGCACTGAAGATGTT TGGGAGGACATCCACGTTGTCCCCGGAGCACTGAAGATGTT < 41bp 0.755089134508834 0.540567990193183 0.7545595 0.33998895 prediction 0.429042288631302 Functional Loss - ARHGAP15 ENSG00000075884 CDS Human protein_coding chr2:144381751 chr2:144381752 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_85943 0 0 0 0 2 ARHGAP15 chr2:144381836 5'GT 144381836 Upstream 85bp
chr7 33296904 33296904 1 + G A UCEC 33296901 + 33296881 33296921 41 GGATGCTGATGGTATTTGAGCAGGAGAGCTATGCTTTTGGA GGATGCTGATGGTATTTGAGCAGAAGAGCTATGCTTTTGGA < 41bp 0.74618967013105 0.531672893553522 0.89175373 0.49669224 prediction 0.429033553155056 Functional Loss - BBS9 ENSG00000122507 CDS Human protein_coding chr7:33296901 chr7:33296904 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_85944 0 0 0 0 1 BBS9 chr7:33296848 3'AG 33296848 Downstream 57bp
chrX 24226423 24226423 1 + C T DLBC 24226421 + 24226401 24226441 41 CAGCGGCAGCCGCCGCCGTGCACGAGCAGCAAATGGATGAC CAGCGGCAGCCGCCGCCGTGCATGAGCAGCAAATGGATGAC < 41bp 0.861536141278273 0.647019649741838 0.23037088 0.19658133 prediction 0.429032983072871 Functional Loss - ZFX ENSG00000005889 CDS Human protein_coding chrX:24226421 chrX:24226423 synonymous SNV . 0 23 hm5C_associated_SNPs_85945 0 0 1 0 2 ZFX chrX:24226335 3'AG 24226335 Downstream 89bp
chrX 24226423 24226423 1 + C T DLBC 24226421 + 24226401 24226441 41 CAGCGGCAGCCGCCGCCGTGCACGAGCAGCAAATGGATGAC CAGCGGCAGCCGCCGCCGTGCATGAGCAGCAAATGGATGAC < 41bp 0.861536141278273 0.647019649741838 0.23037088 0.19658133 prediction 0.429032983072871 Functional Loss - ZFX ENSG00000005889 CDS Human protein_coding chrX:24226421 chrX:24226423 synonymous SNV . 0 23 hm5C_associated_SNPs_85945 0 0 1 0 2 ZFX chrX:24226487 5'GT 24226487 Upstream 65bp
chrX 153171073 153171073 1 + G A OV 153171070 + 153171050 153171090 41 CACCCGGGACCCGCTGCTAGCCCGGGCGGAGCTGGCGCTGC CACCCGGGACCCGCTGCTAGCCCAGGCGGAGCTGGCGCTGC < 41bp 0.808442121330377 0.593929900478701 0.9043505 0.6765964 prediction 0.429024441703353 Functional Loss - AVPR2 ENSG00000126895 CDS Human protein_coding chrX:153171070 chrX:153171073 nonsynonymous SNV 0.131 0 24 hm5C_associated_SNPs_85948 0 0 1 0 1 AVPR2 chrX:153170986 3'AG 153170986 Downstream 88bp
chrX 64958970 64958970 1 + C T UCEC 64958967 + 64958947 64958987 41 GGGCAGAGGCTAGTGCTGACCTACGGGCTGATGCTATGGCC GGGCAGAGGCTAGTGCTGACCTATGGGCTGATGCTATGGCC < 41bp 0.74006500318457 0.525552957902701 0.056609005 0.14527652 prediction 0.429024090563737 Functional Loss - MSN ENSG00000147065 CDS Human protein_coding chrX:64958967 chrX:64958970 nonsynonymous SNV 0.975 2 24 hm5C_associated_SNPs_85949 0 0 1 0 1 MSN chrX:64959056 5'GT 64959056 Upstream 87bp
chr16 70170227 70170227 1 + G T UCEC 70170225 + 70170205 70170245 41 TGGGCGAGTCTCCTGCAGTGCAGGGCTACTTTGTCCTGGCA TGGGCGAGTCTCCTGCAGTGCATGGCTACTTTGTCCTGGCA < 41bp 0.71451137318224 0.354155572524362 0.8104155 0.07881379 prediction 0.42902274636448 Functional Loss - PDPR ENSG00000090857 CDS Human protein_coding chr16:70170225 chr16:70170227 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_85950 0 0 1 0 1 PDPR chr16:70170289 5'GT 70170289 Upstream 63bp
chr9 123898152 123898152 1 + G T LUAD 123898150 + 123898130 123898170 41 ATGCATCTTTGCAGCAGACCCAGGGAGATCTCAGTGCCTAT ATGCATCTTTGCAGCAGACCCATGGAGATCTCAGTGCCTAT < 41bp 0.714509445258681 0.374263389424522 0.8857852 0.15408018 prediction 0.429018890517362 Functional Loss - CNTRL ENSG00000119397 CDS Human protein_coding chr9:123898150 chr9:123898152 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_85953 0 0 1 0 1 CNTRL chr9:123898084 3'AG 123898084 Downstream 69bp
chr9 123898153 123898153 1 + G T LUAD 123898150 + 123898130 123898170 41 ATGCATCTTTGCAGCAGACCCAGGGAGATCTCAGTGCCTAT ATGCATCTTTGCAGCAGACCCAGTGAGATCTCAGTGCCTAT < 41bp 0.714509445258681 0.324896485422682 0.8857852 0.2455756 prediction 0.429018890517362 Functional Loss - CNTRL ENSG00000119397 CDS Human protein_coding chr9:123898150 chr9:123898153 stopgain 0.998 0 24 hm5C_associated_SNPs_85954 0 0 1 0 1 CNTRL chr9:123898084 3'AG 123898084 Downstream 70bp
chr10 135370633 135370633 1 - C T rs8181356 135370636 - 135370616 135370656 41 CACACCATGTTGCAGGAGTGCAAGGAGAGAATTTCTGCCCT CACACCATGTTGCAGGAGTGCAAAGAGAGAATTTCTGCCCT < 41bp 0.794081356439095 0.579573309211774 0.9155537 0.53481287 prediction 0.429016094454643 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135370636 chr10:135370633 synonymous SNV . 0 24 hm5C_associated_SNPs_85956 0 0 0 0 2 SYCE1 chr10:135370571 5'GT 135370571 Upstream 63bp
chr10 135370633 135370633 1 - C T rs8181356 135370636 - 135370616 135370656 41 CACACCATGTTGCAGGAGTGCAAGGAGAGAATTTCTGCCCT CACACCATGTTGCAGGAGTGCAAAGAGAGAATTTCTGCCCT < 41bp 0.794081356439095 0.579573309211774 0.9155537 0.53481287 prediction 0.429016094454643 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135370636 chr10:135370633 synonymous SNV . 0 24 hm5C_associated_SNPs_85956 0 0 0 0 2 SYCE1 chr10:135370660 3'AG 135370660 Downstream 28bp
chr3 126452019 126452019 1 + C T UCEC 126452017 + 126451997 126452037 41 CACTCCAAGGCATCCCTGCCCACGGGCGAAGGCAGCATCAG CACTCCAAGGCATCCCTGCCCATGGGCGAAGGCAGCATCAG < 41bp 0.812524795389795 0.598017876760968 0.42493013 0.4267356 prediction 0.429013837257653 Functional Loss - CHCHD6 ENSG00000159685 CDS Human protein_coding chr3:126452017 chr3:126452019 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_85958 0 0 1 0 2 CHCHD6 chr3:126451921 3'AG 126451921 Downstream 99bp
chr3 126452019 126452019 1 + C T UCEC 126452017 + 126451997 126452037 41 CACTCCAAGGCATCCCTGCCCACGGGCGAAGGCAGCATCAG CACTCCAAGGCATCCCTGCCCATGGGCGAAGGCAGCATCAG < 41bp 0.812524795389795 0.598017876760968 0.42493013 0.4267356 prediction 0.429013837257653 Functional Loss - CHCHD6 ENSG00000159685 CDS Human protein_coding chr3:126452017 chr3:126452019 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_85958 0 0 1 0 2 CHCHD6 chr3:126452065 5'GT 126452065 Upstream 47bp
chr1 19027165 19027165 1 + C T GBM 19027162 + 19027142 19027182 41 CCCAGGTCTGGTTCAGTAACCGCCGCGCCCGTTGGCGTAAG CCCAGGTCTGGTTCAGTAACCGCTGCGCCCGTTGGCGTAAG < 41bp 0.715676319511008 0.50117224245699 0.16206887 0.03527385 prediction 0.429008154108035 Functional Loss - PAX7 ENSG00000009709 CDS Human protein_coding chr1:19027162 chr1:19027165 nonsynonymous SNV 0.976 5 24 hm5C_associated_SNPs_85961 0 0 0 0 1 PAX7 chr1:19027147 3'AG 19027147 Downstream 19bp
chr19 17384931 17384931 1 + T C KIRP 17384930 + 17384910 17384950 41 CTGCAGCTGTCTGGCCTGACCTCCGACCCCCGCGAGCTCTG CTGCAGCTGTCTGGCCTGACCCCCGACCCCCGCGAGCTCTG < 41bp 0.714502728178938 0.475206856648344 0.35406023 0.20539248 prediction 0.429005456357876 Functional Loss - BABAM1 ENSG00000105393;ENSG00000269307 CDS Human other chr19:17384930 chr19:17384931 nonsynonymous SNV 0.722 3 22 hm5C_associated_SNPs_85964 0 0 1 0 2 BABAM1 chr19:17384916 3'AG 17384916 Downstream 16bp
chr19 17384931 17384931 1 + T C KIRP 17384930 + 17384910 17384950 41 CTGCAGCTGTCTGGCCTGACCTCCGACCCCCGCGAGCTCTG CTGCAGCTGTCTGGCCTGACCCCCGACCCCCGCGAGCTCTG < 41bp 0.714502728178938 0.475206856648344 0.35406023 0.20539248 prediction 0.429005456357876 Functional Loss - BABAM1 ENSG00000105393;ENSG00000269307 CDS Human other chr19:17384930 chr19:17384931 nonsynonymous SNV 0.722 3 22 hm5C_associated_SNPs_85964 0 0 1 0 2 BABAM1 chr19:17384994 5'GT 17384994 Upstream 64bp
chr2 118582650 118582650 1 + C T rs185105293 118582647 + 118582627 118582667 41 TACCACTATGAGTTGCTGAACTACATTGATTTGCCCGTCTT TACCACTATGAGTTGCTGAACTATATTGATTTGCCCGTCTT < 41bp 0.717430134769176 0.502928537888142 0.8780196 0.21744198 prediction 0.429003193762068 Functional Loss - DDX18 ENSG00000088205 CDS Human protein_coding chr2:118582647 chr2:118582650 synonymous SNV . 0 24 hm5C_associated_SNPs_85965 0 0 1 0 1 DDX18 chr2:118582677 5'GT 118582677 Upstream 28bp
chr1 12855677 12855677 1 + C T HNSC 12855675 + 12855655 12855695 41 GTCTCTCCCAGTACCCAAGCCTCGGTTACCTAAAGCATCTG GTCTCTCCCAGTACCCAAGCCTTGGTTACCTAAAGCATCTG < 41bp 0.714501552278629 0.447889968428718 0.016619205 0.016574442 prediction 0.429003104557257 Functional Loss - PRAMEF1 ENSG00000116721 CDS Human protein_coding chr1:12855675 chr1:12855677 synonymous SNV . 0 23 hm5C_associated_SNPs_85966 0 0 0 0 1 PRAMEF1 chr1:12855587 3'AG 12855587 Downstream 91bp
chr7 43591832 43591832 1 + G A rs56111512 43591829 + 43591809 43591849 41 CCTGCATTTCAGGTTGTAGACTCGAGGCTGGTGTCCGTGTT CCTGCATTTCAGGTTGTAGACTCAAGGCTGGTGTCCGTGTT < 41bp 0.714823796186113 0.500322712243045 0.7981436 0.36351347 prediction 0.429002167886137 Functional Loss - HECW1 ENSG00000002746 CDS Human protein_coding chr7:43591829 chr7:43591832 synonymous SNV . 0 24 hm5C_associated_SNPs_85967 0 0 0 0 1 HECW1 chr7:43591821 3'AG 43591821 Downstream 12bp
chr22 30769727 30769727 1 + G A rs139169688 30769724 + 30769704 30769744 41 AGCTGCAGAGCGAGCGGGAGCAGGGGCAATGCCAGCTCAGG AGCTGCAGAGCGAGCGGGAGCAGAGGCAATGCCAGCTCAGG < 41bp 0.809745162966068 0.595244206488447 0.8944944 0.87456954 prediction 0.429001912955243 Functional Loss - CCDC157 ENSG00000187860 CDS Human protein_coding chr22:30769724 chr22:30769727 nonsynonymous SNV 0.726 0 24 hm5C_associated_SNPs_85968 0 0 0 0 1 CCDC157 chr22:30769753 5'GT 30769753 Upstream 27bp
chr12 57969023 57969023 1 + G T LUSC 57969020 + 57969000 57969040 41 GCAAGATGGAAGTGACCGGGCGGGAGCTCTCATCCTGCCAG GCAAGATGGAAGTGACCGGGCGGTAGCTCTCATCCTGCCAG < 41bp 0.937819189014099 0.723320315606878 0.907072 0.5378709 prediction 0.428997746814443 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57969020 chr12:57969023 stopgain 0.990 1 24 hm5C_associated_SNPs_85969 0 0 1 0 1 KIF5A chr12:57969055 5'GT 57969055 Upstream 33bp
chr2 226378366 226378366 1 + G A SKCM 226378363 + 226378343 226378383 41 AGCACTGCAGCCAGTAAGAGCGGGAAAACCCCTGAGAGGAC AGCACTGCAGCCAGTAAGAGCGGAAAAACCCCTGAGAGGAC < 41bp 0.785014189667625 0.570516104552876 0.8509619 0.32651663 prediction 0.4289961702295 Functional Loss - NYAP2 ENSG00000144460 CDS Human protein_coding chr2:226378363 chr2:226378366 synonymous SNV . 0 24 hm5C_associated_SNPs_85970 0 0 0 0 1 NYAP2 chr2:226378388 5'GT 226378388 Upstream 23bp
chr7 141418984 141418984 1 + T C LGG 141418983 + 141418963 141419003 41 TCTACAAGTGCATTAAGAGGCTGGATGGATGTGTTTATGCA TCTACAAGTGCATTAAGAGGCCGGATGGATGTGTTTATGCA < 41bp 0.806925295149788 0.592427406473616 0.28288776 0.32035783 prediction 0.428995777352343 Functional Loss - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141418983 chr7:141418984 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_85971 0 0 0 0 1 WEE2 chr7:141419044 5'GT 141419044 Upstream 61bp
chr2 110049003 110049003 1 + G A DLBC 110049000 + 110048980 110049020 41 AGCCCCAGAAGAGTGACGAGCTGGAGCTGCACAAGGGAGAG AGCCCCAGAAGAGTGACGAGCTGAAGCTGCACAAGGGAGAG < 41bp 0.770090923778204 0.555596944828567 0.23772427 0.1570476 prediction 0.428987957899274 Functional Loss - SH3RF3 ENSG00000172985 CDS Human protein_coding chr2:110049000 chr2:110049003 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_85977 0 0 1 0 1 SH3RF3 chr2:110048957 3'AG 110048957 Downstream 47bp
chr1 151993678 151993678 1 + G A COAD 151993675 + 151993655 151993695 41 AGTCCTAGTTCACTCTCAGGCACGAGAGCTGGCCTGGTTAA AGTCCTAGTTCACTCTCAGGCACAAGAGCTGGCCTGGTTAA < 41bp 0.716260368823181 0.501766560918104 0.094189554 0.07174051 prediction 0.428987615810155 Functional Loss - NBPF18P ENSG00000229021;ENSG00000240667 ncRNA_exonic Human other chr1:151993675 chr1:151993678 . . 0 24 hm5C_associated_SNPs_85978 0 0 0 0 1 NBPF18P chr1:151993646 3'AG 151993646 Downstream 33bp
chrX 152036208 152036208 1 + G T LUAD 152036206 + 152036186 152036226 41 AGCTCTCCCGAGACTCGACACTGGGTGGGAAGGTAAGGCCT AGCTCTCCCGAGACTCGACACTTGGTGGGAAGGTAAGGCCT < 41bp 0.913758101747809 0.6992667980269 0.5828451 0.43104023 prediction 0.428982607441818 Functional Loss - NSDHL ENSG00000147383 CDS Human protein_coding chrX:152036206 chrX:152036208 synonymous SNV . 0 23 hm5C_associated_SNPs_85980 0 0 1 0 2 NSDHL chrX:152036115 3'AG 152036115 Downstream 94bp
chrX 152036208 152036208 1 + G T LUAD 152036206 + 152036186 152036226 41 AGCTCTCCCGAGACTCGACACTGGGTGGGAAGGTAAGGCCT AGCTCTCCCGAGACTCGACACTTGGTGGGAAGGTAAGGCCT < 41bp 0.913758101747809 0.6992667980269 0.5828451 0.43104023 prediction 0.428982607441818 Functional Loss - NSDHL ENSG00000147383 CDS Human protein_coding chrX:152036206 chrX:152036208 synonymous SNV . 0 23 hm5C_associated_SNPs_85980 0 0 1 0 2 NSDHL chrX:152036217 5'GT 152036217 Upstream 10bp
chr6 151773695 151773695 1 + G A GBM 151773692 + 151773672 151773712 41 CGGAAAGTGATGGCTGTCGTCCCGGCGTCTCTCTCAGGACA CGGAAAGTGATGGCTGTCGTCCCAGCGTCTCTCTCAGGACA < 41bp 0.798514171589501 0.584024479468972 0.40409818 0.33131325 prediction 0.428979384241058 Functional Loss - ARMT1 ENSG00000146476 CDS Human protein_coding chr6:151773692 chr6:151773695 synonymous SNV . 0 24 hm5C_associated_SNPs_85981 0 0 1 0 1 ARMT1 chr6:151773721 5'GT 151773721 Upstream 27bp
chr2 172945071 172945071 1 + G A UCEC 172945068 + 172945048 172945088 41 TGTTACAGGTCGGCGCAGTTCGAGCACACGGTTCTGATCAC TGTTACAGGTCGGCGCAGTTCGAACACACGGTTCTGATCAC < 41bp 0.799748910444367 0.585260096791891 0.6744639 0.08232933 prediction 0.428977627304952 Functional Loss - METAP1D ENSG00000172878 CDS Human protein_coding chr2:172945068 chr2:172945071 synonymous SNV . 0 24 hm5C_associated_SNPs_85982 0 0 0 0 1 METAP1D chr2:172945056 3'AG 172945056 Downstream 16bp
chr1 36056327 36056327 1 + G A rs142726594 36056324 + 36056304 36056344 41 CCGAGTACCTGTGCCGACAGCACGCTGACCCGGGGGAGCTG CCGAGTACCTGTGCCGACAGCACACTGACCCGGGGGAGCTG < 41bp 0.714487452224881 0.463637530749709 0.37819192 0.31541014 prediction 0.428974904449761 Functional Loss - TFAP2E ENSG00000116819 CDS Human protein_coding chr1:36056324 chr1:36056327 nonsynonymous SNV 0.386 1 24 hm5C_associated_SNPs_85985 0 0 0 0 2 TFAP2E chr1:36056235 3'AG 36056235 Downstream 93bp
chr1 36056327 36056327 1 + G A rs142726594 36056324 + 36056304 36056344 41 CCGAGTACCTGTGCCGACAGCACGCTGACCCGGGGGAGCTG CCGAGTACCTGTGCCGACAGCACACTGACCCGGGGGAGCTG < 41bp 0.714487452224881 0.463637530749709 0.37819192 0.31541014 prediction 0.428974904449761 Functional Loss - TFAP2E ENSG00000116819 CDS Human protein_coding chr1:36056324 chr1:36056327 nonsynonymous SNV 0.386 1 24 hm5C_associated_SNPs_85985 0 0 0 0 2 TFAP2E chr1:36056376 5'GT 36056376 Upstream 50bp
chr18 54603058 54603058 1 + G A LUSC 54603055 + 54603035 54603075 41 CCTCTGAGCCCAGCAGCTGACTCGGCCCGCTCTGCGAGGCA CCTCTGAGCCCAGCAGCTGACTCAGCCCGCTCTGCGAGGCA < 41bp 0.714484812785054 0.483058144736162 0.55539423 0.4292441 prediction 0.428969625570109 Functional Loss - WDR7 ENSG00000091157 CDS Human protein_coding chr18:54603055 chr18:54603058 synonymous SNV . 0 24 hm5C_associated_SNPs_85986 0 0 1 0 2 WDR7 chr18:54603019 3'AG 54603019 Downstream 40bp
chr18 54603058 54603058 1 + G A LUSC 54603055 + 54603035 54603075 41 CCTCTGAGCCCAGCAGCTGACTCGGCCCGCTCTGCGAGGCA CCTCTGAGCCCAGCAGCTGACTCAGCCCGCTCTGCGAGGCA < 41bp 0.714484812785054 0.483058144736162 0.55539423 0.4292441 prediction 0.428969625570109 Functional Loss - WDR7 ENSG00000091157 CDS Human protein_coding chr18:54603055 chr18:54603058 synonymous SNV . 0 24 hm5C_associated_SNPs_85986 0 0 1 0 2 WDR7 chr18:54603136 5'GT 54603136 Upstream 79bp
chr14 24113673 24113673 1 + T C COAD 24113672 + 24113652 24113692 41 TGCTGGGTCTCACTAGAACACTGGCATTGGAGCTGGCCCCC TGCTGGGTCTCACTAGAACACCGGCATTGGAGCTGGCCCCC < 41bp 0.785667073749315 0.571182893257294 0.127049 0.077207655 prediction 0.428968360984042 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113672 chr14:24113673 nonsynonymous SNV 0.003 4 22 hm5C_associated_SNPs_85987 0 0 1 2 3 DHRS2 chr14:24113618 3'AG 24113618 Downstream 56bp
chr14 24113673 24113673 1 + T C COAD 24113672 + 24113652 24113692 41 TGCTGGGTCTCACTAGAACACTGGCATTGGAGCTGGCCCCC TGCTGGGTCTCACTAGAACACCGGCATTGGAGCTGGCCCCC < 41bp 0.785667073749315 0.571182893257294 0.127049 0.077207655 prediction 0.428968360984042 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113672 chr14:24113673 nonsynonymous SNV 0.003 4 22 hm5C_associated_SNPs_85987 0 0 1 2 3 DHRS2 chr14:24113752 5'GT 24113752 Upstream 80bp
chr14 24113673 24113673 1 + T C COAD 24113672 + 24113652 24113692 41 TGCTGGGTCTCACTAGAACACTGGCATTGGAGCTGGCCCCC TGCTGGGTCTCACTAGAACACCGGCATTGGAGCTGGCCCCC < 41bp 0.785667073749315 0.571182893257294 0.127049 0.077207655 prediction 0.428968360984042 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113672 chr14:24113673 nonsynonymous SNV 0.003 4 22 hm5C_associated_SNPs_85987 0 0 1 2 3 DHRS2 chr14:24113763 5'GT 24113763 Upstream 91bp
chr3 183474355 183474355 1 + G A COAD 183474352 + 183474332 183474372 41 TCCAAGCCCATCACCATTGCCTCGAACCCCGACTTCCACTC TCCAAGCCCATCACCATTGCCTCAAACCCCGACTTCCACTC < 41bp 0.788634514219903 0.574151389291199 0.73776877 0.09914708 prediction 0.42896624985741 Functional Loss - YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183474352 chr3:183474355 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_85988 0 0 1 0 1 YEATS2 chr3:183474316 3'AG 183474316 Downstream 40bp
chr17 4349384 4349384 1 + T C COAD 4349383 + 4349363 4349403 41 GTCCCGGGGCATCGTGGGCACTGGCTCGGCCAGCTACTCCA GTCCCGGGGCATCGTGGGCACCGGCTCGGCCAGCTACTCCA < 41bp 0.768590524857591 0.554108677381118 0.34606135 0.21921074 prediction 0.428963694952947 Functional Loss - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4349383 chr17:4349384 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_85989 0 0 0 0 1 SPNS3 chr17:4349343 3'AG 4349343 Downstream 42bp
chr15 67879196 67879196 1 + G T LUAD 67879193 + 67879173 67879213 41 TTTACTTATAGGTGAATACTCGGGCCGGACCCTCTCAACAC TTTACTTATAGGTGAATACTCGGTCCGGACCCTCTCAACAC < 41bp 0.714481827281844 0.316505522041917 0.92209303 0.23901245 prediction 0.428963654563687 Functional Loss - MAP2K5 ENSG00000137764 CDS Human protein_coding chr15:67879193 chr15:67879196 nonsynonymous SNV 0.975 2 24 hm5C_associated_SNPs_85990 0 0 1 0 2 MAP2K5 chr15:67879184 3'AG 67879184 Downstream 13bp
chr15 67879196 67879196 1 + G T LUAD 67879193 + 67879173 67879213 41 TTTACTTATAGGTGAATACTCGGGCCGGACCCTCTCAACAC TTTACTTATAGGTGAATACTCGGTCCGGACCCTCTCAACAC < 41bp 0.714481827281844 0.316505522041917 0.92209303 0.23901245 prediction 0.428963654563687 Functional Loss - MAP2K5 ENSG00000137764 CDS Human protein_coding chr15:67879193 chr15:67879196 nonsynonymous SNV 0.975 2 24 hm5C_associated_SNPs_85990 0 0 1 0 2 MAP2K5 chr15:67879251 5'GT 67879251 Upstream 56bp
chr19 1008188 1008188 1 - C T CESC 1008191 - 1008171 1008211 41 GACTTGTAGCGGCTGATGAACTCGGACAGGTTGGAGGTGAG GACTTGTAGCGGCTGATGAACTCAGACAGGTTGGAGGTGAG < 41bp 0.714481479794003 0.481699225483457 0.32821608 0.26307762 prediction 0.428962959588007 Functional Loss - GRIN3B ENSG00000116032 CDS Human protein_coding chr19:1008191 chr19:1008188 synonymous SNV . 0 24 hm5C_associated_SNPs_85991 0 0 0 0 1 GRIN3B chr19:1008176 5'GT 1008176 Upstream 13bp
chr19 1008189 1008189 1 - G A UCEC 1008191 - 1008171 1008211 41 GACTTGTAGCGGCTGATGAACTCGGACAGGTTGGAGGTGAG GACTTGTAGCGGCTGATGAACTTGGACAGGTTGGAGGTGAG < 41bp 0.714481479794003 0.448484085406712 0.32821608 0.32237688 prediction 0.428962959588007 Functional Loss - GRIN3B ENSG00000116032 CDS Human protein_coding chr19:1008191 chr19:1008189 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_85992 0 0 0 0 1 GRIN3B chr19:1008176 5'GT 1008176 Upstream 14bp
chr6 36976695 36976695 1 + C T UCEC 36976693 + 36976673 36976713 41 GCCTCCCGAGTCCCCAGGACCACGGGAGAAGACGAATGTCG GCCTCCCGAGTCCCCAGGACCATGGGAGAAGACGAATGTCG < 41bp 0.781528720823349 0.567051096786215 0.7347133 0.80760694 prediction 0.428955248074268 Functional Loss - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36976693 chr6:36976695 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_85996 0 0 0 0 1 FGD2 chr6:36976610 3'AG 36976610 Downstream 86bp
chr11 64875325 64875325 1 + C T UCEC 64875323 + 64875303 64875343 41 GTTCCTCTTTGAGCTGCCCTCGCGCCTCACCAAGTGCGTGG GTTCCTCTTTGAGCTGCCCTCGTGCCTCACCAAGTGCGTGG < 41bp 0.814737066122186 0.600261551407764 0.7943643 0.88781756 prediction 0.428951029428844 Functional Loss - VPS51 ENSG00000149823 CDS Human protein_coding chr11:64875323 chr11:64875325 nonsynonymous SNV 0.972 3 23 hm5C_associated_SNPs_85998 0 0 0 0 1 VPS51 chr11:64875275 3'AG 64875275 Downstream 51bp
chr4 48422151 48422151 1 + C T SKCM 48422148 + 48422128 48422168 41 TTGCCATCCCACAGTACCTTCTCCAGGCAAATTCCGTTCCC TTGCCATCCCACAGTACCTTCTCTAGGCAAATTCCGTTCCC < 41bp 0.759420300955504 0.544948142182367 0.9457129 0.77593493 prediction 0.428944317546274 Functional Loss - SLAIN2 ENSG00000109171 CDS Human protein_coding chr4:48422148 chr4:48422151 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_85999 0 0 0 0 1 SLAIN2 chr4:48422142 3'AG 48422142 Downstream 10bp
chr12 4766925 4766925 1 + G A rs148477287 4766922 + 4766902 4766942 41 CTGCTATTATAGGAATGGGACGCGAGAGATAAAGATTCTAT CTGCTATTATAGGAATGGGACGCAAGAGATAAAGATTCTAT < 41bp 0.764343919005267 0.549874268221926 0.15706918 0.15437716 prediction 0.428939301566682 Functional Loss - NDUFA9 ENSG00000139180 CDS Human protein_coding chr12:4766922 chr12:4766925 synonymous SNV . 0 24 hm5C_associated_SNPs_86000 0 0 1 0 2 NDUFA9 chr12:4766914 3'AG 4766914 Downstream 12bp
chr12 4766925 4766925 1 + G A rs148477287 4766922 + 4766902 4766942 41 CTGCTATTATAGGAATGGGACGCGAGAGATAAAGATTCTAT CTGCTATTATAGGAATGGGACGCAAGAGATAAAGATTCTAT < 41bp 0.764343919005267 0.549874268221926 0.15706918 0.15437716 prediction 0.428939301566682 Functional Loss - NDUFA9 ENSG00000139180 CDS Human protein_coding chr12:4766922 chr12:4766925 synonymous SNV . 0 24 hm5C_associated_SNPs_86000 0 0 1 0 2 NDUFA9 chr12:4767005 5'GT 4767005 Upstream 81bp
chr3 32200523 32200523 1 + C T STAD 32200520 + 32200500 32200540 41 ACAGCCACCTTCCTAGAGAGCTGCGGGGTGGCCGACCTGAT ACAGCCACCTTCCTAGAGAGCTGTGGGGTGGCCGACCTGAT < 41bp 0.73670022325108 0.52223405657471 0.18486878 0.34275705 prediction 0.428932333352741 Functional Loss - GPD1L ENSG00000152642 CDS Human protein_coding chr3:32200520 chr3:32200523 synonymous SNV . 0 24 hm5C_associated_SNPs_86003 0 0 0 0 1 GPD1L chr3:32200601 5'GT 32200601 Upstream 79bp
chr9 138413982 138413982 1 + G A rs150536266 138413979 + 138413959 138413999 41 TCGGTGACACCCATGACCCTCACGACCCTGGAAGGGGGCAA TCGGTGACACCCATGACCCTCACAACCCTGGAAGGGGGCAA < 41bp 0.807124511159916 0.592658914394963 0.31267548 0.21830961 prediction 0.428931193529907 Functional Loss - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138413979 chr9:138413982 synonymous SNV . 0 24 hm5C_associated_SNPs_86004 0 0 0 0 2 LCN1 chr9:138413893 3'AG 138413893 Downstream 90bp
chr9 138413982 138413982 1 + G A rs150536266 138413979 + 138413959 138413999 41 TCGGTGACACCCATGACCCTCACGACCCTGGAAGGGGGCAA TCGGTGACACCCATGACCCTCACAACCCTGGAAGGGGGCAA < 41bp 0.807124511159916 0.592658914394963 0.31267548 0.21830961 prediction 0.428931193529907 Functional Loss - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138413979 chr9:138413982 synonymous SNV . 0 24 hm5C_associated_SNPs_86004 0 0 0 0 2 LCN1 chr9:138414023 5'GT 138414023 Upstream 42bp
chr17 78092457 78092457 1 + G A LUAD 78092454 + 78092434 78092474 41 TCTCTCTGCTCGGCCCAGAACACGATCGTGAATGAGCTGGT TCTCTCTGCTCGGCCCAGAACACAATCGTGAATGAGCTGGT < 41bp 0.795390113740049 0.580926827094361 0.3223002 0.2000077 prediction 0.428926573291376 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78092454 chr17:78092457 synonymous SNV . 0 24 hm5C_associated_SNPs_86007 1 0 0 0 1 GAA chr17:78092452 3'AG 78092452 Downstream 6bp
chr16 88039846 88039846 1 + C T DLBC 88039843 + 88039823 88039863 41 AGTCAGAGCATCGGGAGCAACGTCACGCTCATCACCCTGAA AGTCAGAGCATCGGGAGCAACGTTACGCTCATCACCCTGAA < 41bp 0.715299602441007 0.500846936545042 0.27729547 0.26800317 prediction 0.42890533179193 Functional Loss - BANP ENSG00000172530 CDS Human protein_coding chr16:88039843 chr16:88039846 synonymous SNV . 0 24 hm5C_associated_SNPs_86010 0 0 1 0 1 BANP chr16:88039871 5'GT 88039871 Upstream 26bp
chr4 89649005 89649005 1 + G A rs143340242 89649002 + 89648982 89649022 41 GCAGATGACCCGGTCCTAGGCAGGGACCAAAATTCCTTGTC GCAGATGACCCGGTCCTAGGCAGAGACCAAAATTCCTTGTC < 41bp 0.717960426351884 0.503509517364648 0.903702 0.82329774 prediction 0.428901817974471 Functional Loss - FAM13A-AS1 ENSG00000248019 ncRNA_exonic Human antisense chr4:89649002 chr4:89649005 . . 0 24 hm5C_associated_SNPs_86013 0 0 0 2 1 FAM13A-AS1 chr4:89648986 3'AG 89648986 Downstream 20bp
chr11 70709580 70709580 1 + G A rs111963565 70709577 + 70709557 70709597 41 CACGGCTATGTGGTGGAAGACACGGATTCTGTGGGGGGTTT CACGGCTATGTGGTGGAAGACACAGATTCTGTGGGGGGTTT < 41bp 0.75568215846767 0.54123288853365 0.26671746 0.18268615 prediction 0.42889853986804 Functional Loss - SHANK2-AS3 ENSG00000171671 ncRNA_exonic Human antisense chr11:70709577 chr11:70709580 . . 0 24 hm5C_associated_SNPs_86014 0 0 0 0 1 SHANK2-AS3 chr11:70709666 5'GT 70709666 Upstream 87bp
chr17 46196139 46196139 1 + G T LUAD 46196136 + 46196116 46196156 41 AGTTCATTGAGAAGCGACGACAAGGTCTGCAGCACTTCCTT AGTTCATTGAGAAGCGACGACAATGTCTGCAGCACTTCCTT < 41bp 0.71444638114752 0.303302854220282 0.12953803 0.0657931 prediction 0.42889276229504 Functional Loss - SNX11 ENSG00000002919 CDS Human protein_coding chr17:46196136 chr17:46196139 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_86016 0 0 1 0 2 SNX11 chr17:46196066 3'AG 46196066 Downstream 74bp
chr17 46196139 46196139 1 + G T LUAD 46196136 + 46196116 46196156 41 AGTTCATTGAGAAGCGACGACAAGGTCTGCAGCACTTCCTT AGTTCATTGAGAAGCGACGACAATGTCTGCAGCACTTCCTT < 41bp 0.71444638114752 0.303302854220282 0.12953803 0.0657931 prediction 0.42889276229504 Functional Loss - SNX11 ENSG00000002919 CDS Human protein_coding chr17:46196136 chr17:46196139 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_86016 0 0 1 0 2 SNX11 chr17:46196161 5'GT 46196161 Upstream 23bp
chr11 20636272 20636272 1 + A T GBM 20636268 + 20636248 20636288 41 CCCAAAATACAGATCAAGAACTCGACTTTCTGCATGACCGC CCCAAAATACAGATCAAGAACTCGTCTTTCTGCATGACCGC < 41bp 0.714445737873708 0.35229380428123 0.1965279 0.15175179 prediction 0.428891475747416 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20636268 chr11:20636272 nonsynonymous SNV 0.945 0 25 hm5C_associated_SNPs_86017 0 0 0 0 2 SLC6A5 chr11:20636225 3'AG 20636225 Downstream 48bp
chr11 20636272 20636272 1 + A T GBM 20636268 + 20636248 20636288 41 CCCAAAATACAGATCAAGAACTCGACTTTCTGCATGACCGC CCCAAAATACAGATCAAGAACTCGTCTTTCTGCATGACCGC < 41bp 0.714445737873708 0.35229380428123 0.1965279 0.15175179 prediction 0.428891475747416 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20636268 chr11:20636272 nonsynonymous SNV 0.945 0 25 hm5C_associated_SNPs_86017 0 0 0 0 2 SLC6A5 chr11:20636366 5'GT 20636366 Upstream 95bp
chr11 20636271 20636271 1 + G T LUAD 20636268 + 20636248 20636288 41 CCCAAAATACAGATCAAGAACTCGACTTTCTGCATGACCGC CCCAAAATACAGATCAAGAACTCTACTTTCTGCATGACCGC < 41bp 0.714445737873708 0.324719507719241 0.1965279 0.13873875 prediction 0.428891475747416 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20636268 chr11:20636271 synonymous SNV . 0 24 hm5C_associated_SNPs_86018 0 0 0 0 2 SLC6A5 chr11:20636225 3'AG 20636225 Downstream 47bp
chr11 20636271 20636271 1 + G T LUAD 20636268 + 20636248 20636288 41 CCCAAAATACAGATCAAGAACTCGACTTTCTGCATGACCGC CCCAAAATACAGATCAAGAACTCTACTTTCTGCATGACCGC < 41bp 0.714445737873708 0.324719507719241 0.1965279 0.13873875 prediction 0.428891475747416 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20636268 chr11:20636271 synonymous SNV . 0 24 hm5C_associated_SNPs_86018 0 0 0 0 2 SLC6A5 chr11:20636366 5'GT 20636366 Upstream 96bp
chr11 20636270 20636270 1 + C T SKCM 20636268 + 20636248 20636288 41 CCCAAAATACAGATCAAGAACTCGACTTTCTGCATGACCGC CCCAAAATACAGATCAAGAACTTGACTTTCTGCATGACCGC < 41bp 0.714445737873708 0.412590791335349 0.1965279 0.06445283 prediction 0.428891475747416 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20636268 chr11:20636270 nonsynonymous SNV 0.949 0 23 hm5C_associated_SNPs_86019 0 0 0 0 2 SLC6A5 chr11:20636225 3'AG 20636225 Downstream 46bp
chr11 20636270 20636270 1 + C T SKCM 20636268 + 20636248 20636288 41 CCCAAAATACAGATCAAGAACTCGACTTTCTGCATGACCGC CCCAAAATACAGATCAAGAACTTGACTTTCTGCATGACCGC < 41bp 0.714445737873708 0.412590791335349 0.1965279 0.06445283 prediction 0.428891475747416 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20636268 chr11:20636270 nonsynonymous SNV 0.949 0 23 hm5C_associated_SNPs_86019 0 0 0 0 2 SLC6A5 chr11:20636366 5'GT 20636366 Upstream 97bp
chr15 27216730 27216730 1 + C T COAD 27216728 + 27216708 27216748 41 TCTGCCTGTTCTCGGGCTTGCACGCGCGGTAAGTGGCGCGG TCTGCCTGTTCTCGGGCTTGCATGCGCGGTAAGTGGCGCGG < 41bp 0.723192710346195 0.50874764966025 0.76207995 0.6333403 prediction 0.428890121371889 Functional Loss - GABRG3 ENSG00000182256 CDS Human protein_coding chr15:27216728 chr15:27216730 synonymous SNV . 0 23 hm5C_associated_SNPs_86020 0 0 0 0 1 GABRG3 chr15:27216735 5'GT 27216735 Upstream 6bp
chr1 1961050 1961050 1 + G A STAD 1961047 + 1961027 1961067 41 CAGTGCCCGCTCCTCCCTGCCACGGGCATCAGCCATCAAGG CAGTGCCCGCTCCTCCCTGCCACAGGCATCAGCCATCAAGG < 41bp 0.808830010534129 0.594385770134849 0.16723263 0.17658275 prediction 0.42888848079856 Functional Loss - GABRD ENSG00000187730 CDS Human protein_coding chr1:1961047 chr1:1961050 nonsynonymous SNV 0.179 5 24 hm5C_associated_SNPs_86021 0 0 0 0 1 GABRD chr1:1960990 3'AG 1960990 Downstream 61bp
chr12 49888574 49888574 1 + C T UCEC 49888571 + 49888551 49888591 41 CCTGCCGCAGAACCAAGTAACGGCATCCCAGATTCCAGTAA CCTGCCGCAGAACCAAGTAACGGTATCCCAGATTCCAGTAA < 41bp 0.737542254646134 0.523098309598942 0.3293191 0.17581329 prediction 0.428887890094384 Functional Loss - SPATS2 ENSG00000123352 CDS Human protein_coding chr12:49888571 chr12:49888574 synonymous SNV . 0 24 hm5C_associated_SNPs_86022 0 0 1 0 1 SPATS2 chr12:49888524 3'AG 49888524 Downstream 51bp
chr10 96454810 96454810 1 + G A SKCM 96454807 + 96454787 96454827 41 GAAAAATTCAATGAAAACCTCAGGATTCTGAGCTCTCCATG GAAAAATTCAATGAAAACCTCAGAATTCTGAGCTCTCCATG < 41bp 0.781959964246909 0.567518030644187 0.83278954 0.2928148 prediction 0.428883867205444 Functional Loss - CYP2C18 ENSG00000108242 CDS Human protein_coding chr10:96454807 chr10:96454810 synonymous SNV . 0 24 hm5C_associated_SNPs_86025 0 0 0 0 1 CYP2C18 chr10:96454834 5'GT 96454834 Upstream 25bp
chr15 34517318 34517318 1 + G T ACC 34517315 + 34517295 34517335 41 CTATAGGACGCAGCTGTTGCCATGACGGCCCAGGGGGGCCT CTATAGGACGCAGCTGTTGCCATTACGGCCCAGGGGGGCCT < 41bp 0.813091076086728 0.598650530480553 0.15433654 0.018710881 prediction 0.42888109121235 Functional Loss - EMC4 ENSG00000128463 CDS Human protein_coding chr15:34517315 chr15:34517318 nonsynonymous SNV 0.983 2 24 hm5C_associated_SNPs_86026 0 0 1 0 1 EMC4 chr15:34517401 5'GT 34517401 Upstream 84bp
chr7 100773786 100773786 1 + C T LUSC 100773784 + 100773764 100773804 41 GATGAGATCAGCACCACAGACGCGATCTTCGTCCAGCGGGA GATGAGATCAGCACCACAGACGTGATCTTCGTCCAGCGGGA < 41bp 0.838911474089363 0.62447112392046 0.27350694 0.36400032 prediction 0.428880700337806 Functional Loss - SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100773784 chr7:100773786 nonsynonymous SNV 0.903 4 23 hm5C_associated_SNPs_86027 0 0 1 0 1 SERPINE1 chr7:100773702 3'AG 100773702 Downstream 85bp
chr6 43267398 43267398 1 + C T UCEC 43267395 + 43267375 43267415 41 CGGCGTCTGCTGCTGGTAGCCTACGTGAGTACCCTGGTGCT CGGCGTCTGCTGCTGGTAGCCTATGTGAGTACCCTGGTGCT < 41bp 0.729124462691651 0.514689665009318 0.43794858 0.362553 prediction 0.428869595364667 Functional Loss - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43267395 chr6:43267398 synonymous SNV . 0 24 hm5C_associated_SNPs_86029 0 0 1 0 1 SLC22A7 chr6:43267365 3'AG 43267365 Downstream 34bp
chr9 133948055 133948055 1 + G A rs146221263 133948052 + 133948032 133948072 41 TCCTGGAGCAGATGATGAGCCTCGAGGGTGCTGTCAAGGCC TCCTGGAGCAGATGATGAGCCTCAAGGGTGCTGTCAAGGCC < 41bp 0.799344971263807 0.584911435177648 0.43882334 0.7741483 prediction 0.428867072172319 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133948052 chr9:133948055 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_86030 0 0 0 0 1 LAMC3 chr9:133948017 3'AG 133948017 Downstream 39bp
chr12 132402037 132402037 1 + C T SARC 132402035 + 132402015 132402055 41 AGCCCTTCCCCGGTGGTCTTCACCGTGGGCTCTCCCCCGAG AGCCCTTCCCCGGTGGTCTTCATCGTGGGCTCTCCCCCGAG < 41bp 0.812834279025336 0.598400784999226 0.8323994 0.78911704 prediction 0.42886698805222 Functional Loss - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132402035 chr12:132402037 nonsynonymous SNV 0.162 4 23 hm5C_associated_SNPs_86031 0 0 1 0 2 ULK1 chr12:132401956 3'AG 132401956 Downstream 82bp
chr12 132402037 132402037 1 + C T SARC 132402035 + 132402015 132402055 41 AGCCCTTCCCCGGTGGTCTTCACCGTGGGCTCTCCCCCGAG AGCCCTTCCCCGGTGGTCTTCATCGTGGGCTCTCCCCCGAG < 41bp 0.812834279025336 0.598400784999226 0.8323994 0.78911704 prediction 0.42886698805222 Functional Loss - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132402035 chr12:132402037 nonsynonymous SNV 0.162 4 23 hm5C_associated_SNPs_86031 0 0 1 0 2 ULK1 chr12:132402099 5'GT 132402099 Upstream 63bp
chr7 20698224 20698224 1 + G T UCEC 20698221 + 20698201 20698241 41 CGTGCCTTAGTTCGAAACCCCAAGATTCTGATTTTAGATGA CGTGCCTTAGTTCGAAACCCCAATATTCTGATTTTAGATGA < 41bp 0.714432981071792 0.325725069151311 0.2130984 0.11319885 prediction 0.428865962143585 Functional Loss - ABCB5 ENSG00000004846 CDS Human protein_coding chr7:20698221 chr7:20698224 nonsynonymous SNV 0.986 4 24 hm5C_associated_SNPs_86033 0 0 0 0 2 ABCB5 chr7:20698129 3'AG 20698129 Downstream 96bp
chr7 20698224 20698224 1 + G T UCEC 20698221 + 20698201 20698241 41 CGTGCCTTAGTTCGAAACCCCAAGATTCTGATTTTAGATGA CGTGCCTTAGTTCGAAACCCCAATATTCTGATTTTAGATGA < 41bp 0.714432981071792 0.325725069151311 0.2130984 0.11319885 prediction 0.428865962143585 Functional Loss - ABCB5 ENSG00000004846 CDS Human protein_coding chr7:20698221 chr7:20698224 nonsynonymous SNV 0.986 4 24 hm5C_associated_SNPs_86033 0 0 0 0 2 ABCB5 chr7:20698299 5'GT 20698299 Upstream 76bp
chr19 36351837 36351837 1 + G A UCEC 36351834 + 36351814 36351854 41 GGCCGATTCTGCAGGCAAAGCCGGAGCCCGTGTCCGTGGAC GGCCGATTCTGCAGGCAAAGCCGAAGCCCGTGTCCGTGGAC < 41bp 0.8281917879766 0.613761428583018 0.9040417 0.38605067 prediction 0.428860718787165 Functional Loss - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36351834 chr19:36351837 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_86038 0 0 0 0 1 KIRREL2 chr19:36351811 3'AG 36351811 Downstream 27bp
chr15 90801499 90801499 1 + G A rs115977526 90801496 + 90801476 90801516 41 ACAAGTTGAAGCCCTGGCTGCTAGAGGTGAGGATTATCTCC ACAAGTTGAAGCCCTGGCTGCTAAAGGTGAGGATTATCTCC < 41bp 0.714429729563226 0.476786745189703 0.80920833 0.6060819 prediction 0.428859459126452 Functional Loss - TTLL13P ENSG00000213471 CDS Human other chr15:90801496 chr15:90801499 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_86039 0 0 0 0 2 TTLL13P chr15:90801415 3'AG 90801415 Downstream 85bp
chr15 90801499 90801499 1 + G A rs115977526 90801496 + 90801476 90801516 41 ACAAGTTGAAGCCCTGGCTGCTAGAGGTGAGGATTATCTCC ACAAGTTGAAGCCCTGGCTGCTAAAGGTGAGGATTATCTCC < 41bp 0.714429729563226 0.476786745189703 0.80920833 0.6060819 prediction 0.428859459126452 Functional Loss - TTLL13P ENSG00000213471 CDS Human protein_coding chr15:90801496 chr15:90801499 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_86039 0 0 0 0 2 TTLL13P chr15:90801501 5'GT 90801501 Upstream 3bp
chrX 52842232 52842232 1 + G T CESC 52842230 + 52842210 52842250 41 GTCAGGATCATACACCTGGTCAGAAGAGAGAAGATGATCAG GTCAGGATCATACACCTGGTCATAAGAGAGAAGATGATCAG < 41bp 0.908755900028278 0.6943297266666 0.73671097 0.53662467 prediction 0.428852346723356 Functional Loss - XAGE5 ENSG00000171405 CDS Human protein_coding chrX:52842230 chrX:52842232 nonsynonymous SNV 0.000 3 23 hm5C_associated_SNPs_86042 0 0 0 0 2 XAGE5 chrX:52842164 3'AG 52842164 Downstream 69bp
chrX 52842232 52842232 1 + G T CESC 52842230 + 52842210 52842250 41 GTCAGGATCATACACCTGGTCAGAAGAGAGAAGATGATCAG GTCAGGATCATACACCTGGTCATAAGAGAGAAGATGATCAG < 41bp 0.908755900028278 0.6943297266666 0.73671097 0.53662467 prediction 0.428852346723356 Functional Loss - XAGE5 ENSG00000171405 CDS Human protein_coding chrX:52842230 chrX:52842232 nonsynonymous SNV 0.000 3 23 hm5C_associated_SNPs_86042 0 0 0 0 2 XAGE5 chrX:52842269 5'GT 52842269 Upstream 38bp
chr10 3151638 3151638 1 + C T UCEC 3151636 + 3151616 3151656 41 GTGTCACTGAACGGGAACCACGCCGTGCGCCTGCCGCTGAT GTGTCACTGAACGGGAACCACGTCGTGCGCCTGCCGCTGAT < 41bp 0.821560196685741 0.607136142259957 0.19041857 0.08727336 prediction 0.428848108851568 Functional Loss - PFKP ENSG00000067057 CDS Human protein_coding chr10:3151636 chr10:3151638 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_86043 0 0 1 0 2 PFKP chr10:3151547 3'AG 3151547 Downstream 92bp
chr10 3151638 3151638 1 + C T UCEC 3151636 + 3151616 3151656 41 GTGTCACTGAACGGGAACCACGCCGTGCGCCTGCCGCTGAT GTGTCACTGAACGGGAACCACGTCGTGCGCCTGCCGCTGAT < 41bp 0.821560196685741 0.607136142259957 0.19041857 0.08727336 prediction 0.428848108851568 Functional Loss - PFKP ENSG00000067057 CDS Human protein_coding chr10:3151636 chr10:3151638 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_86043 0 0 1 0 2 PFKP chr10:3151672 5'GT 3151672 Upstream 35bp
chr1 153752315 153752315 1 + C T UCEC 153752313 + 153752293 153752333 41 TGTCCCCAGGAGTCTTTGGCCACCACAGAGACCTTCAAACA TGTCCCCAGGAGTCTTTGGCCATCACAGAGACCTTCAAACA < 41bp 0.714422203858525 0.430711881100958 0.022402734 0.02872625 prediction 0.428844407717049 Functional Loss - SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153752313 chr1:153752315 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_86044 0 0 0 0 1 SLC27A3 chr1:153752302 3'AG 153752302 Downstream 14bp
chr18 21057228 21057228 1 + C T rs56282762 21057226 + 21057206 21057246 41 TTCCGGGACTGCAGGAATGTCTCGCAGGTAGACGTGTAAAC TTCCGGGACTGCAGGAATGTCTTGCAGGTAGACGTGTAAAC < 41bp 0.714421190437254 0.42259439930511 0.18843344 0.08156076 prediction 0.428842380874508 Functional Loss - RIOK3 ENSG00000101782 CDS Human protein_coding chr18:21057226 chr18:21057228 nonsynonymous SNV 0.979 0 23 hm5C_associated_SNPs_86045 0 0 1 0 2 RIOK3 chr18:21057143 3'AG 21057143 Downstream 86bp
chr18 21057228 21057228 1 + C T rs56282762 21057226 + 21057206 21057246 41 TTCCGGGACTGCAGGAATGTCTCGCAGGTAGACGTGTAAAC TTCCGGGACTGCAGGAATGTCTTGCAGGTAGACGTGTAAAC < 41bp 0.714421190437254 0.42259439930511 0.18843344 0.08156076 prediction 0.428842380874508 Functional Loss - RIOK3 ENSG00000101782 CDS Human protein_coding chr18:21057226 chr18:21057228 nonsynonymous SNV 0.979 0 23 hm5C_associated_SNPs_86045 0 0 1 0 2 RIOK3 chr18:21057232 5'GT 21057232 Upstream 5bp
chr18 21057229 21057229 1 + G A UCEC 21057226 + 21057206 21057246 41 TTCCGGGACTGCAGGAATGTCTCGCAGGTAGACGTGTAAAC TTCCGGGACTGCAGGAATGTCTCACAGGTAGACGTGTAAAC < 41bp 0.714421190437254 0.472973231243052 0.18843344 0.08509681 prediction 0.428842380874508 Functional Loss - RIOK3 ENSG00000101782 CDS Human protein_coding chr18:21057226 chr18:21057229 synonymous SNV . 0 24 hm5C_associated_SNPs_86046 0 0 1 0 2 RIOK3 chr18:21057143 3'AG 21057143 Downstream 87bp
chr18 21057229 21057229 1 + G A UCEC 21057226 + 21057206 21057246 41 TTCCGGGACTGCAGGAATGTCTCGCAGGTAGACGTGTAAAC TTCCGGGACTGCAGGAATGTCTCACAGGTAGACGTGTAAAC < 41bp 0.714421190437254 0.472973231243052 0.18843344 0.08509681 prediction 0.428842380874508 Functional Loss - RIOK3 ENSG00000101782 CDS Human protein_coding chr18:21057226 chr18:21057229 synonymous SNV . 0 24 hm5C_associated_SNPs_86046 0 0 1 0 2 RIOK3 chr18:21057232 5'GT 21057232 Upstream 4bp
chr18 22056854 22056854 1 + A T COAD 22056850 + 22056830 22056870 41 TGAAGGTAGTGAATGTGAACCTGGATTTTTTTCGGAATGGT TGAAGGTAGTGAATGTGAACCTGGTTTTTTTTCGGAATGGT < 41bp 0.714420786950622 0.397901924081165 0.15415299 0.08856505 prediction 0.428841573901243 Functional Loss - HRH4 ENSG00000134489 CDS Human protein_coding chr18:22056850 chr18:22056854 synonymous SNV . 0 25 hm5C_associated_SNPs_86047 0 0 0 0 1 HRH4 chr18:22056811 3'AG 22056811 Downstream 44bp
chr7 112112906 112112906 1 + G A COAD 112112903 + 112112883 112112923 41 GCTTAAAACGATGAAGATTTCTCGTTTCGAAAGGGTAGGTT GCTTAAAACGATGAAGATTTCTCATTTCGAAAGGGTAGGTT < 41bp 0.714420718397822 0.493096980249211 0.030505806 0.025634319 prediction 0.428841436795644 Functional Loss - IFRD1 ENSG00000006652 CDS Human protein_coding chr7:112112903 chr7:112112906 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_86048 0 0 1 1 1 IFRD1 chr7:112112821 3'AG 112112821 Downstream 86bp
chr7 112112905 112112905 1 + C T SKCM 112112903 + 112112883 112112923 41 GCTTAAAACGATGAAGATTTCTCGTTTCGAAAGGGTAGGTT GCTTAAAACGATGAAGATTTCTTGTTTCGAAAGGGTAGGTT < 41bp 0.714420718397822 0.428647387327071 0.030505806 0.033852845 prediction 0.428841436795644 Functional Loss - IFRD1 ENSG00000006652 CDS Human protein_coding chr7:112112903 chr7:112112905 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_86049 0 0 1 1 1 IFRD1 chr7:112112821 3'AG 112112821 Downstream 85bp
chr16 29819148 29819148 1 + C T PAAD 29819146 + 29819126 29819166 41 CCACTGTGGCAAGAGCTTCTCCCGGTGTGCACGGGGCCTCG CCACTGTGGCAAGAGCTTCTCCTGGTGTGCACGGGGCCTCG < 41bp 0.775364304915896 0.560950097179733 0.8239963 0.63156873 prediction 0.428828415472327 Functional Loss - MAZ ENSG00000103495 CDS Human protein_coding chr16:29819146 chr16:29819148 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_86053 0 0 1 0 1 MAZ chr16:29819149 5'GT 29819149 Upstream 2bp
chr6 35255444 35255444 1 + T C GBM 35255443 + 35255423 35255463 41 AAGGCTATGACCCCAGCACCCTGGAAGCCGTCCAACTGGAA AAGGCTATGACCCCAGCACCCCGGAAGCCGTCCAACTGGAA < 41bp 0.827816309324571 0.613406285355706 0.3737674 0.36570972 prediction 0.42882004793773 Functional Loss - ZNF76 ENSG00000065029 CDS Human protein_coding chr6:35255443 chr6:35255444 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_86056 0 0 1 0 1 ZNF76 chr6:35255423 3'AG 35255423 Downstream 22bp
chr14 77242566 77242566 1 + G A SKCM 77242563 + 77242543 77242583 41 TGGACGTGGAGCGCCTGGGCCGCGATGACTTCCGCAAGGAG TGGACGTGGAGCGCCTGGGCCGCAATGACTTCCGCAAGGAG < 41bp 0.808911828440831 0.594506754781337 0.5847313 0.25298113 prediction 0.428810147318989 Functional Loss - VASH1 ENSG00000071246 CDS Human protein_coding chr14:77242563 chr14:77242566 nonsynonymous SNV 0.618 1 24 hm5C_associated_SNPs_86059 0 0 1 0 1 VASH1 chr14:77242616 5'GT 77242616 Upstream 51bp
chr7 100468072 100468072 1 + C T UCEC 100468069 + 100468049 100468089 41 CACGACATGAACCACCCGCCCAGCGGGGAGTACTTTGGTGA CACGACATGAACCACCCGCCCAGTGGGGAGTACTTTGGTGA < 41bp 0.716375190816453 0.501971743575718 0.6976861 0.46311408 prediction 0.42880689448147 Functional Loss - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100468069 chr7:100468072 synonymous SNV . 0 24 hm5C_associated_SNPs_86062 0 0 1 1 2 TRIP6 chr7:100467992 3'AG 100467992 Downstream 81bp
chr7 100468072 100468072 1 + C T UCEC 100468069 + 100468049 100468089 41 CACGACATGAACCACCCGCCCAGCGGGGAGTACTTTGGTGA CACGACATGAACCACCCGCCCAGTGGGGAGTACTTTGGTGA < 41bp 0.716375190816453 0.501971743575718 0.6976861 0.46311408 prediction 0.42880689448147 Functional Loss - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100468069 chr7:100468072 synonymous SNV . 0 24 hm5C_associated_SNPs_86062 0 0 1 1 2 TRIP6 chr7:100468085 5'GT 100468085 Upstream 14bp
chr10 13246254 13246254 1 + C T GBM 13246251 + 13246231 13246271 41 CACTTCAAGCTGCTGGAGACCTGCGTCAGTGAGCAGCATGA CACTTCAAGCTGCTGGAGACCTGTGTCAGTGAGCAGCATGA < 41bp 0.714401518151477 0.494243607418251 0.13430461 0.07332736 prediction 0.428803036302954 Functional Loss - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13246251 chr10:13246254 synonymous SNV . 0 24 hm5C_associated_SNPs_86063 0 0 1 0 1 MCM10 chr10:13246219 3'AG 13246219 Downstream 36bp
chr18 19080601 19080601 1 + C T UCEC 19080599 + 19080579 19080619 41 TATGATGAGGAGGAGATCAACACCGGTGAGTGCTGAGCCCA TATGATGAGGAGGAGATCAACATCGGTGAGTGCTGAGCCCA < 41bp 0.714401380720781 0.441730582298592 0.752615 0.53324926 prediction 0.428802761441561 Functional Loss - GREB1L ENSG00000141449 CDS Human protein_coding chr18:19080599 chr18:19080601 nonsynonymous SNV 0.741 0 23 hm5C_associated_SNPs_86064 0 0 0 0 1 GREB1L chr18:19080603 5'GT 19080603 Upstream 3bp
chr10 18957571 18957571 1 + C T UCEC 18957568 + 18957548 18957588 41 ATATTGGTGGTCAGGAGTCTCTGCGATCATCCTGGAACACA ATATTGGTGGTCAGGAGTCTCTGTGATCATCCTGGAACACA < 41bp 0.7160820665347 0.501682755533991 0.18575484 0.08493358 prediction 0.428798622001418 Functional Loss - ARL5B ENSG00000165997 CDS Human protein_coding chr10:18957568 chr10:18957571 stopgain 0.987 1 24 hm5C_associated_SNPs_86065 0 0 1 0 1 ARL5B chr10:18957606 5'GT 18957606 Upstream 36bp
chr19 47646784 47646784 1 + G A BLCA 47646781 + 47646761 47646801 41 TCTCGGGTGCTTCTTGTCGGCTTGAAAGGACTTGGGGCTGA TCTCGGGTGCTTCTTGTCGGCTTAAAAGGACTTGGGGCTGA < 41bp 0.751928636944047 0.537531162608432 0.39901567 0.35518032 prediction 0.428794948671231 Functional Loss - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47646781 chr19:47646784 synonymous SNV . 0 24 hm5C_associated_SNPs_86067 0 0 1 0 2 SAE1 chr19:47646751 3'AG 47646751 Downstream 34bp
chr19 47646784 47646784 1 + G A BLCA 47646781 + 47646761 47646801 41 TCTCGGGTGCTTCTTGTCGGCTTGAAAGGACTTGGGGCTGA TCTCGGGTGCTTCTTGTCGGCTTAAAAGGACTTGGGGCTGA < 41bp 0.751928636944047 0.537531162608432 0.39901567 0.35518032 prediction 0.428794948671231 Functional Loss - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47646781 chr19:47646784 synonymous SNV . 0 24 hm5C_associated_SNPs_86067 0 0 1 0 2 SAE1 chr19:47646862 5'GT 47646862 Upstream 79bp
chr7 150217089 150217089 1 + G A rs7800829 150217086 + 150217066 150217106 41 GCTGAGAGTGAGGACCGCTCCCTGAGGATCGTTCTGGTAGG GCTGAGAGTGAGGACCGCTCCCTAAGGATCGTTCTGGTAGG < 41bp 0.792221476896926 0.577824186050187 0.16901812 0.083134264 prediction 0.428794581693478 Functional Loss - GIMAP7 ENSG00000179144 CDS Human protein_coding chr7:150217086 chr7:150217089 synonymous SNV . 0 24 hm5C_associated_SNPs_86068 0 0 0 0 1 GIMAP7 chr7:150217022 3'AG 150217022 Downstream 68bp
chr1 11848032 11848032 1 + G C COAD 11848028 + 11848008 11848048 41 TGCCCCTGTGGACGAGGGACCAGGGACCAAGAGCGCACTCC TGCCCCTGTGGACGAGGGACCAGGCACCAAGAGCGCACTCC < 41bp 0.866884263325291 0.652488397552417 0.9227712 0.7065089 prediction 0.428791731545749 Functional Loss - C1orf167 ENSG00000215910 CDS Human protein_coding chr1:11848028 chr1:11848032 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_86071 0 0 0 0 1 C1orf167 chr1:11848104 5'GT 11848104 Upstream 73bp
chr1 17666217 17666217 1 + G A LUAD 17666214 + 17666194 17666234 41 ATGTCGCTGATGACCCTGAGCACGAAGACCCCCAAGGACTT ATGTCGCTGATGACCCTGAGCACAAAGACCCCCAAGGACTT < 41bp 0.777330590506004 0.562935906111127 0.098448545 0.037451416 prediction 0.428789368789755 Functional Loss - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17666214 chr1:17666217 synonymous SNV . 0 24 hm5C_associated_SNPs_86072 0 0 0 0 2 PADI4 chr1:17666183 3'AG 17666183 Downstream 35bp
chr1 17666217 17666217 1 + G A LUAD 17666214 + 17666194 17666234 41 ATGTCGCTGATGACCCTGAGCACGAAGACCCCCAAGGACTT ATGTCGCTGATGACCCTGAGCACAAAGACCCCCAAGGACTT < 41bp 0.777330590506004 0.562935906111127 0.098448545 0.037451416 prediction 0.428789368789755 Functional Loss - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17666214 chr1:17666217 synonymous SNV . 0 24 hm5C_associated_SNPs_86072 0 0 0 0 2 PADI4 chr1:17666308 5'GT 17666308 Upstream 92bp
chr20 61951548 61951548 1 + C T UCEC 61951546 + 61951526 61951566 41 GGCCCCCGGAGCAGTTCGGCCGCGGTGAGTTGGGCCCTGCC GGCCCCCGGAGCAGTTCGGCCGTGGTGAGTTGGGCCCTGCC < 41bp 0.714391447288372 0.48530645917067 0.88460135 0.8785988 prediction 0.428782894576744 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61951546 chr20:61951548 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_86075 0 0 0 0 1 COL20A1 chr20:61951549 5'GT 61951549 Upstream 2bp
chr19 54967885 54967885 1 + G A CESC 54967882 + 54967862 54967902 41 TGGAGTGTGAGGACCCGGAGCGAGAGCTGAAGAAGCAGAAG TGGAGTGTGAGGACCCGGAGCGAAAGCTGAAGAAGCAGAAG < 41bp 0.714388398050016 0.464073235979566 0.7538344 0.23353583 prediction 0.428776796100032 Functional Loss - LENG8 ENSG00000167615 CDS Human protein_coding chr19:54967882 chr19:54967885 nonsynonymous SNV 0.903 1 24 hm5C_associated_SNPs_86076 0 0 1 0 1 LENG8 chr19:54967815 3'AG 54967815 Downstream 71bp
chr12 69127366 69127366 1 + G T BLCA 69127363 + 69127343 69127383 41 CTGAAGATGATAATGCTATCCGAGAACATTTGTGCATCAGA CTGAAGATGATAATGCTATCCGATAACATTTGTGCATCAGA < 41bp 0.714388074992571 0.335632567596174 0.32136318 0.18390271 prediction 0.428776149985141 Functional Loss - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69127363 chr12:69127366 stopgain 0.689 1 24 hm5C_associated_SNPs_86077 0 0 1 0 1 NUP107 chr12:69127392 5'GT 69127392 Upstream 27bp
chr3 10251376 10251376 1 + G T UCEC 10251372 + 10251352 10251392 41 CCTCCCCACTTCGTCTGATTCAAAGGTAAATCCACCCCTCG CCTCCCCACTTCGTCTGATTCAAATGTAAATCCACCCCTCG < 41bp 0.748522666474955 0.534135788171921 0.750028 0.22227728 prediction 0.428773756606068 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10251372 chr3:10251376 nonsynonymous SNV 0.652 1 25 hm5C_associated_SNPs_86078 0 0 1 0 1 IRAK2 chr3:10251376 5'GT 10251376 Upstream 1bp
chr17 75210084 75210084 1 + C T SKCM 75210081 + 75210061 75210101 41 ACCTCCTCCAGCCAGTCCCACTCCAGCTCCATGATCTCCAG ACCTCCTCCAGCCAGTCCCACTCTAGCTCCATGATCTCCAG < 41bp 0.721869381651742 0.507482662031996 0.68241847 0.21455842 prediction 0.428773439239493 Functional Loss - SEC14L1 ENSG00000129657 CDS Human protein_coding chr17:75210081 chr17:75210084 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_86079 0 0 1 0 2 SEC14L1 chr17:75210000 3'AG 75210000 Downstream 85bp
chr17 75210084 75210084 1 + C T SKCM 75210081 + 75210061 75210101 41 ACCTCCTCCAGCCAGTCCCACTCCAGCTCCATGATCTCCAG ACCTCCTCCAGCCAGTCCCACTCTAGCTCCATGATCTCCAG < 41bp 0.721869381651742 0.507482662031996 0.68241847 0.21455842 prediction 0.428773439239493 Functional Loss - SEC14L1 ENSG00000129657 CDS Human protein_coding chr17:75210081 chr17:75210084 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_86079 0 0 1 0 2 SEC14L1 chr17:75210101 5'GT 75210101 Upstream 18bp
chr19 1295574 1295574 1 + G T LUAD 1295571 + 1295551 1295591 41 GCAGGCGCGGGGGACGACGGCGGGGGCTACACGGTGGAGGT GCAGGCGCGGGGGACGACGGCGGTGGCTACACGGTGGAGGT < 41bp 0.940802079569262 0.726415821754057 0.91363096 0.83919656 prediction 0.428772515630409 Functional Loss - EFNA2 ENSG00000099617 CDS Human protein_coding chr19:1295571 chr19:1295574 synonymous SNV . 0 24 hm5C_associated_SNPs_86080 0 0 1 0 1 EFNA2 chr19:1295544 3'AG 1295544 Downstream 31bp
chr12 57175797 57175797 1 + C T BLCA 57175794 + 57175774 57175814 41 GAACAATGCAGGCATTCTTACACCAATTACCTTATGTGAGT GAACAATGCAGGCATTCTTACACTAATTACCTTATGTGAGT < 41bp 0.729853321516389 0.515467795875759 0.23076579 0.2088337 prediction 0.428771051281261 Functional Loss - HSD17B6 ENSG00000025423 CDS Human protein_coding chr12:57175794 chr12:57175797 nonsynonymous SNV 0.003 2 24 hm5C_associated_SNPs_86081 0 0 0 0 1 HSD17B6 chr12:57175758 3'AG 57175758 Downstream 40bp
chr3 189582119 189582119 1 + C T COAD 189582116 + 189582096 189582136 41 CCTCCTCAGGGAGCTGTTATCCGCGCCATGCCTGTCTACAA CCTCCTCAGGGAGCTGTTATCCGTGCCATGCCTGTCTACAA < 41bp 0.723155007964542 0.508769929132395 0.9411491 0.3715707 prediction 0.428770157664295 Functional Loss - TP63 ENSG00000073282 CDS Human protein_coding chr3:189582116 chr3:189582119 synonymous SNV . 0 24 hm5C_associated_SNPs_86082 0 0 0 0 1 TP63 chr3:189582021 3'AG 189582021 Downstream 99bp
chr17 78059821 78059821 1 + T C rs117203086 78059820 + 78059800 78059840 41 AGGGGGAAGAAGTGGGGCCCCTGGAGCTTGAAATCAAAAGG AGGGGGAAGAAGTGGGGCCCCCGGAGCTTGAAATCAAAAGG < 41bp 0.802747797309144 0.588365007096761 0.5995581 0.4587543 prediction 0.428765580424767 Functional Loss - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78059820 chr17:78059821 nonsynonymous SNV 0.938 1 22 hm5C_associated_SNPs_86084 2 0 0 0 1 CCDC40 chr17:78059802 3'AG 78059802 Downstream 20bp
chr10 13237118 13237118 1 + G A UCEC 13237115 + 13237095 13237135 41 ACAGCCCCCTGCTCAGCCTCCACGGACAGGATCCGAGTTCC ACAGCCCCCTGCTCAGCCTCCACAGACAGGATCCGAGTTCC < 41bp 0.807874819361935 0.593493463314624 0.03141573 0.01241675 prediction 0.428762712094622 Functional Loss - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13237115 chr10:13237118 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_86086 0 0 1 0 1 MCM10 chr10:13237041 3'AG 13237041 Downstream 78bp
chr7 71175901 71175901 1 + G T SARC 71175898 + 71175878 71175918 41 AAGAGCAGCCTGTACAAGCGCTGGAACTTCATCCAGGTGAG AAGAGCAGCCTGTACAAGCGCTGTAACTTCATCCAGGTGAG < 41bp 0.714377287073675 0.353450764004468 0.23362508 0.24201506 prediction 0.428754574147351 Functional Loss - GALNT17 ENSG00000185274 CDS Human protein_coding chr7:71175898 chr7:71175901 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_86088 0 0 0 0 1 GALNT17 chr7:71175913 5'GT 71175913 Upstream 13bp
chr9 139694569 139694569 1 + A C rs7859194 139694565 + 139694545 139694585 41 TGGAGAGCATGCAGCTGGAGCTGGACAGCCTGCGGAGCCAG TGGAGAGCATGCAGCTGGAGCTGGCCAGCCTGCGGAGCCAG < 41bp 0.938320302579238 0.723946721918562 0.3625613 0.30773753 prediction 0.428747161321352 Functional Loss - CCDC183 ENSG00000213213;ENSG00000272896 CDS Human other chr9:139694565 chr9:139694569 nonsynonymous SNV 0.143 0 25 hm5C_associated_SNPs_86089 0 0 0 0 1 CCDC183 chr9:139694621 5'GT 139694621 Upstream 53bp
chrX 37545364 37545364 1 + C T rs28940593 37545362 + 37545342 37545382 41 TCTCGCTACTGCCTTGCGCGCTCGTGCAGCTCACGCTTCTC TCTCGCTACTGCCTTGCGCGCTTGTGCAGCTCACGCTTCTC < 41bp 0.819327479844733 0.604954823048841 0.19040391 0.1495874 prediction 0.428745313591785 Functional Loss - XK ENSG00000047597 CDS Human protein_coding chrX:37545362 chrX:37545364 synonymous SNV . 0 23 hm5C_associated_SNPs_86090 0 0 1 0 1 XK chrX:37545459 5'GT 37545459 Upstream 96bp
chr17 20224924 20224924 1 + G A STAD 20224921 + 20224901 20224941 41 GCGACGTCCCTGGGGTGGAGCACGTCTTGGTTCCTGGAGAC GCGACGTCCCTGGGGTGGAGCACATCTTGGTTCCTGGAGAC < 41bp 0.714372114430521 0.476824392492837 0.69334567 0.44954556 prediction 0.428744228861041 Functional Loss - CCDC144CP ENSG00000154898 ncRNA_exonic Human transcribed_processed_pseudogene chr17:20224921 chr17:20224924 . . 0 24 hm5C_associated_SNPs_86091 0 0 0 0 1 CCDC144CP chr17:20224973 5'GT 20224973 Upstream 50bp
chr2 223536541 223536541 1 + G A rs35959734 223536538 + 223536518 223536558 41 TTGCACCGCTCAACATCCAGCTGGCGCGGCGGCTGCAGACG TTGCACCGCTCAACATCCAGCTGACGCGGCGGCTGCAGACG < 41bp 0.714370027082796 0.465921582831212 0.31643903 0.26092917 prediction 0.428740054165591 Functional Loss - MOGAT1 ENSG00000124003 CDS Human protein_coding chr2:223536538 chr2:223536541 nonsynonymous SNV 0.464 0 24 hm5C_associated_SNPs_86093 0 0 0 0 1 MOGAT1 chr2:223536598 5'GT 223536598 Upstream 58bp
chr10 95400710 95400710 1 + G A CESC 95400707 + 95400687 95400727 41 TAAAGAAGTACTACACAGATCTCGAAGCCTTTGCCATGCTT TAAAGAAGTACTACACAGATCTCAAAGCCTTTGCCATGCTT < 41bp 0.714362096402285 0.482046630702725 0.9020503 0.22423294 prediction 0.428724192804571 Functional Loss - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95400707 chr10:95400710 nonsynonymous SNV 0.804 4 24 hm5C_associated_SNPs_86096 0 0 0 0 2 PDE6C chr10:95400677 3'AG 95400677 Downstream 34bp
chr10 95400710 95400710 1 + G A CESC 95400707 + 95400687 95400727 41 TAAAGAAGTACTACACAGATCTCGAAGCCTTTGCCATGCTT TAAAGAAGTACTACACAGATCTCAAAGCCTTTGCCATGCTT < 41bp 0.714362096402285 0.482046630702725 0.9020503 0.22423294 prediction 0.428724192804571 Functional Loss - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95400707 chr10:95400710 nonsynonymous SNV 0.804 4 24 hm5C_associated_SNPs_86096 0 0 0 0 2 PDE6C chr10:95400786 5'GT 95400786 Upstream 77bp
chr19 35551594 35551594 1 + C T LUSC 35551592 + 35551572 35551612 41 CCGTGGCCCAGGCCTCTCCCCACGGTCTGCAGCTGGGGGTG CCGTGGCCCAGGCCTCTCCCCATGGTCTGCAGCTGGGGGTG < 41bp 0.842230355551703 0.627868310014569 0.8830006 0.7382971 prediction 0.428724091074267 Functional Loss - HPN ENSG00000105707 CDS Human protein_coding chr19:35551592 chr19:35551594 synonymous SNV . 0 23 hm5C_associated_SNPs_86097 0 0 1 0 1 HPN chr19:35551531 3'AG 35551531 Downstream 64bp
chr2 264985 264985 1 + G A rs11691572 264982 + 264962 265002 41 AAGATGGCGGAACAGGCTACCAAGTCCGTGCTGTTTGTGTG AAGATGGCGGAACAGGCTACCAAATCCGTGCTGTTTGTGTG < 41bp 0.714360964020551 0.476223041031437 0.29983956 0.36072063 prediction 0.428721928041103 Functional Loss - ACP1 ENSG00000143727 CDS Human protein_coding chr2:264982 chr2:264985 synonymous SNV . 0 24 hm5C_associated_SNPs_86098 0 0 1 0 1 ACP1 chr2:265007 5'GT 265007 Upstream 23bp
chr2 204735621 204735621 1 + T C STAD 204735620 + 204735600 204735640 41 TGTACCCACCGCCATACTACCTGGGCATAGGCAACGGAACC TGTACCCACCGCCATACTACCCGGGCATAGGCAACGGAACC < 41bp 0.769818098399715 0.555459698757418 0.13027436 0.36455262 prediction 0.428716799284595 Functional Loss - CTLA4 ENSG00000163599 CDS Human protein_coding chr2:204735620 chr2:204735621 nonsynonymous SNV 0.048 0 22 hm5C_associated_SNPs_86101 0 0 0 0 1 CTLA4 chr2:204735656 5'GT 204735656 Upstream 36bp
chr5 21491588 21491588 1 + G A UCEC 21491585 + 21491565 21491605 41 TCTGGTGGCCGTACCTGATGCACGAACACCCCGCCTACCTG TCTGGTGGCCGTACCTGATGCACAAACACCCCGCCTACCTG < 41bp 0.765647681587709 0.551289393689456 0.12003127 0.025224566 prediction 0.428716575796508 Functional Loss - GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21491585 chr5:21491588 . . 0 24 hm5C_associated_SNPs_86102 0 0 0 0 1 GUSBP1 chr5:21491617 5'GT 21491617 Upstream 30bp
chr3 49212334 49212334 1 + G A SKCM 49212331 + 49212311 49212351 41 CCTGGGTGGCCTGCAGCAGCCTGGGCCCCACAACTTCTACT CCTGGGTGGCCTGCAGCAGCCTGAGCCCCACAACTTCTACT < 41bp 0.795690669135251 0.581333314755951 0.14713949 0.086844295 prediction 0.4287147087586 Functional Loss - KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212331 chr3:49212334 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_86103 0 0 1 0 1 KLHDC8B chr3:49212399 5'GT 49212399 Upstream 66bp
chr1 196879578 196879578 1 + G A LUSC 196879575 + 196879555 196879595 41 GGGATTACATTCACTGCACACAAGATGGGTGGTTGCCAACA GGGATTACATTCACTGCACACAAAATGGGTGGTTGCCAACA < 41bp 0.760310969784359 0.5459555341324 0.48745853 0.23731202 prediction 0.428710871303918 Functional Loss - CFHR4 ENSG00000134365 CDS Human protein_coding chr1:196879575 chr1:196879578 nonsynonymous SNV 0.011 0 24 hm5C_associated_SNPs_86104 0 0 0 0 1 CFHR4 chr1:196879608 5'GT 196879608 Upstream 31bp
chr1 51439625 51439625 1 + G A rs142420524 51439622 + 51439602 51439642 41 TGCTACTTAGAGGTGCTAATCCCGATTTGAAAGACCGAACT TGCTACTTAGAGGTGCTAATCCCAATTTGAAAGACCGAACT < 41bp 0.769495748129435 0.555141677394737 0.42862177 0.4542772 prediction 0.428708141469395 Functional Loss - CDKN2C ENSG00000123080 CDS Human protein_coding chr1:51439622 chr1:51439625 nonsynonymous SNV 0.990 0 24 hm5C_associated_SNPs_86105 0 0 1 0 1 CDKN2C chr1:51439565 3'AG 51439565 Downstream 61bp
chr3 42703096 42703096 1 + C T LIHC 42703093 + 42703073 42703113 41 ATCTGTGAGAAGAAGTTCTACACCATGGCCCACGTGCGTAA ATCTGTGAGAAGAAGTTCTACACTATGGCCCACGTGCGTAA < 41bp 0.742984684418688 0.528633440110638 0.036289215 0.029768914 prediction 0.4287024886161 Functional Loss - ZBTB47 ENSG00000114853 CDS Human protein_coding chr3:42703093 chr3:42703096 synonymous SNV . 0 24 hm5C_associated_SNPs_86106 0 0 1 0 1 ZBTB47 chr3:42703124 5'GT 42703124 Upstream 29bp
chr17 57292205 57292205 1 + G T UCEC 57292203 + 57292183 57292223 41 ACCATGTCCGGTATTCTACCCAGAAAAACAAGAAATCACCC ACCATGTCCGGTATTCTACCCATAAAAACAAGAAATCACCC < 41bp 0.714349152141645 0.378151493342965 0.9285629 0.5452796 prediction 0.428698304283289 Functional Loss - SMG8 ENSG00000167447;ENSG00000265303 CDS Human other chr17:57292203 chr17:57292205 stopgain 1.000 1 23 hm5C_associated_SNPs_86107 0 0 0 0 1 SMG8 chr17:57292166 3'AG 57292166 Downstream 40bp
chr5 42629169 42629169 1 + T C ESCA 42629168 + 42629148 42629188 41 GCTATCCTTAGCAGAGCACCCTGGAGTCTGCAAAGTGTTAA GCTATCCTTAGCAGAGCACCCCGGAGTCTGCAAAGTGTTAA < 41bp 0.752472945674349 0.538126673650773 0.27374834 0.81268084 prediction 0.428692544047152 Functional Loss - GHR ENSG00000112964 CDS Human protein_coding chr5:42629168 chr5:42629169 nonsynonymous SNV 0.718 1 22 hm5C_associated_SNPs_86108 0 0 0 0 2 GHR chr5:42629140 3'AG 42629140 Downstream 30bp
chr5 42629169 42629169 1 + T C ESCA 42629168 + 42629148 42629188 41 GCTATCCTTAGCAGAGCACCCTGGAGTCTGCAAAGTGTTAA GCTATCCTTAGCAGAGCACCCCGGAGTCTGCAAAGTGTTAA < 41bp 0.752472945674349 0.538126673650773 0.27374834 0.81268084 prediction 0.428692544047152 Functional Loss - GHR ENSG00000112964 CDS Human protein_coding chr5:42629168 chr5:42629169 nonsynonymous SNV 0.718 1 22 hm5C_associated_SNPs_86108 0 0 0 0 2 GHR chr5:42629205 5'GT 42629205 Upstream 37bp
chr14 95109833 95109833 1 + G A rs17826595 95109830 + 95109810 95109850 41 GTGGATGAAGCCCTTTGACTCACGTGCCACCAGCCCAAAGG GTGGATGAAGCCCTTTGACTCACATGCCACCAGCCCAAAGG < 41bp 0.714344206432422 0.479237065790664 0.35565695 0.1744698 prediction 0.428688412864844 Functional Loss - SERPINA13P ENSG00000187483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr14:95109830 chr14:95109833 . . 0 24 hm5C_associated_SNPs_86109 0 0 0 0 1 SERPINA13P chr14:95109806 3'AG 95109806 Downstream 28bp
chr6 35393636 35393636 1 + G A COAD 35393633 + 35393613 35393653 41 GCCAGGCCTCATGAACGTTCCACGGGTGGAGGCTATCCAGG GCCAGGCCTCATGAACGTTCCACAGGTGGAGGCTATCCAGG < 41bp 0.792469019531501 0.578125076391061 0.3302929 0.11854589 prediction 0.428687886280879 Functional Loss - PPARD ENSG00000112033 CDS Human protein_coding chr6:35393633 chr6:35393636 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_86111 0 0 0 0 1 PPARD chr6:35393609 3'AG 35393609 Downstream 28bp
chr22 21990800 21990800 1 + C T SKCM 21990798 + 21990778 21990818 41 AAGTCCAGCATGTCTCACTTCTCCAACCGCCTTTATGAGGA AAGTCCAGCATGTCTCACTTCTTCAACCGCCTTTATGAGGA < 41bp 0.714343877206186 0.424945641828892 0.96744245 0.33846402 prediction 0.428687754412371 Functional Loss - CCDC116 ENSG00000161180 CDS Human protein_coding chr22:21990798 chr22:21990800 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_86112 0 0 0 0 1 CCDC116 chr22:21990721 3'AG 21990721 Downstream 80bp
chr5 137521300 137521300 1 + C T UCEC 137521297 + 137521277 137521317 41 CAGGGTCTGAATTGGCCCTACGGCGGTCACAAAGGTTGGCA CAGGGTCTGAATTGGCCCTACGGTGGTCACAAAGGTTGGCA < 41bp 0.734062024123644 0.519718855433596 0.08767256 0.1114541 prediction 0.428686337380096 Functional Loss - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137521297 chr5:137521300 nonsynonymous SNV 0.946 3 24 hm5C_associated_SNPs_86113 0 0 0 0 2 KIF20A chr5:137521201 3'AG 137521201 Downstream 100bp
chr5 137521300 137521300 1 + C T UCEC 137521297 + 137521277 137521317 41 CAGGGTCTGAATTGGCCCTACGGCGGTCACAAAGGTTGGCA CAGGGTCTGAATTGGCCCTACGGTGGTCACAAAGGTTGGCA < 41bp 0.734062024123644 0.519718855433596 0.08767256 0.1114541 prediction 0.428686337380096 Functional Loss - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137521297 chr5:137521300 nonsynonymous SNV 0.946 3 24 hm5C_associated_SNPs_86113 0 0 0 0 2 KIF20A chr5:137521399 5'GT 137521399 Upstream 100bp
chr11 89916127 89916127 1 + G A UCEC 89916124 + 89916104 89916144 41 TGAATGACCAACTGATGCTCCTGGAAAGAGCATTCATCGAT TGAATGACCAACTGATGCTCCTGAAAAGAGCATTCATCGAT < 41bp 0.766431429032825 0.552090917284567 0.44960177 0.31080383 prediction 0.428681023496515 Functional Loss - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89916124 chr11:89916127 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_86116 0 0 0 0 2 NAALAD2 chr11:89916084 3'AG 89916084 Downstream 44bp
chr11 89916127 89916127 1 + G A UCEC 89916124 + 89916104 89916144 41 TGAATGACCAACTGATGCTCCTGGAAAGAGCATTCATCGAT TGAATGACCAACTGATGCTCCTGAAAAGAGCATTCATCGAT < 41bp 0.766431429032825 0.552090917284567 0.44960177 0.31080383 prediction 0.428681023496515 Functional Loss - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89916124 chr11:89916127 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_86116 0 0 0 0 2 NAALAD2 chr11:89916176 5'GT 89916176 Upstream 50bp
chr1 65854059 65854059 1 + G T LUSC 65854056 + 65854036 65854076 41 ATTCCAGCTTCAGTTTCACACTGGATTCATACCACTGGACA ATTCCAGCTTCAGTTTCACACTGTATTCATACCACTGGACA < 41bp 0.714337463265543 0.32842691578578 0.3887667 0.13221458 prediction 0.428674926531086 Functional Loss - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65854056 chr1:65854059 nonsynonymous SNV 0.977 5 24 hm5C_associated_SNPs_86117 0 0 1 0 2 DNAJC6 chr1:65854019 3'AG 65854019 Downstream 41bp
chr1 65854059 65854059 1 + G T LUSC 65854056 + 65854036 65854076 41 ATTCCAGCTTCAGTTTCACACTGGATTCATACCACTGGACA ATTCCAGCTTCAGTTTCACACTGTATTCATACCACTGGACA < 41bp 0.714337463265543 0.32842691578578 0.3887667 0.13221458 prediction 0.428674926531086 Functional Loss - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65854056 chr1:65854059 nonsynonymous SNV 0.977 5 24 hm5C_associated_SNPs_86117 0 0 1 0 2 DNAJC6 chr1:65854098 5'GT 65854098 Upstream 40bp
chr6 32008267 32008267 1 + C T PRAD 32008265 + 32008245 32008285 41 GGTCCCCTACAAGGACCGTGCACGGCTGCCCTTGCTCAATG GGTCCCCTACAAGGACCGTGCATGGCTGCCCTTGCTCAATG < 41bp 0.733780884592446 0.519443707793171 0.80591106 0.746416 prediction 0.428674353598549 Functional Loss - CYP21A2 ENSG00000231852 CDS Human protein_coding chr6:32008265 chr6:32008267 nonsynonymous SNV 0.291 3 23 hm5C_associated_SNPs_86118 0 0 0 0 2 CYP21A2 chr6:32008183 3'AG 32008183 Downstream 85bp
chr6 32008267 32008267 1 + C T PRAD 32008265 + 32008245 32008285 41 GGTCCCCTACAAGGACCGTGCACGGCTGCCCTTGCTCAATG GGTCCCCTACAAGGACCGTGCATGGCTGCCCTTGCTCAATG < 41bp 0.733780884592446 0.519443707793171 0.80591106 0.746416 prediction 0.428674353598549 Functional Loss - CYP21A2 ENSG00000231852 CDS Human protein_coding chr6:32008265 chr6:32008267 nonsynonymous SNV 0.291 3 23 hm5C_associated_SNPs_86118 0 0 0 0 2 CYP21A2 chr6:32008361 5'GT 32008361 Upstream 95bp
chr12 132281733 132281733 1 + G A STAD 132281730 + 132281710 132281750 41 TCTTGCCTTTCAGAAGTCCCCACGAGAAGAAGAAGAAGAGG TCTTGCCTTTCAGAAGTCCCCACAAGAAGAAGAAGAAGAGG < 41bp 0.767657443982315 0.553324383714446 0.27299434 0.1329962 prediction 0.428666120535739 Functional Loss - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132281730 chr12:132281733 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_86122 0 0 1 0 1 SFSWAP chr12:132281723 3'AG 132281723 Downstream 11bp
chr22 24107045 24107045 1 + C T CESC 24107043 + 24107023 24107063 41 CTGGAGGAAGCGTATGGGCACTCGGCGAGGCCGCCATGAGC CTGGAGGAAGCGTATGGGCACTTGGCGAGGCCGCCATGAGC < 41bp 0.714330246856294 0.454723514661936 0.3445591 0.30529106 prediction 0.428660493712587 Functional Loss - C22orf15 ENSG00000169314 CDS Human protein_coding chr22:24107043 chr22:24107045 nonsynonymous SNV 0.032 1 23 hm5C_associated_SNPs_86125 0 0 0 0 2 C22orf15 chr22:24106980 3'AG 24106980 Downstream 66bp
chr22 24107045 24107045 1 + C T CESC 24107043 + 24107023 24107063 41 CTGGAGGAAGCGTATGGGCACTCGGCGAGGCCGCCATGAGC CTGGAGGAAGCGTATGGGCACTTGGCGAGGCCGCCATGAGC < 41bp 0.714330246856294 0.454723514661936 0.3445591 0.30529106 prediction 0.428660493712587 Functional Loss - C22orf15 ENSG00000169314 CDS Human protein_coding chr22:24107043 chr22:24107045 nonsynonymous SNV 0.032 1 23 hm5C_associated_SNPs_86125 0 0 0 0 2 C22orf15 chr22:24107089 5'GT 24107089 Upstream 45bp
chr22 24107046 24107046 1 + G A COAD 24107043 + 24107023 24107063 41 CTGGAGGAAGCGTATGGGCACTCGGCGAGGCCGCCATGAGC CTGGAGGAAGCGTATGGGCACTCAGCGAGGCCGCCATGAGC < 41bp 0.714330246856294 0.458748011614953 0.3445591 0.22004241 prediction 0.428660493712587 Functional Loss - C22orf15 ENSG00000169314 CDS Human protein_coding chr22:24107043 chr22:24107046 nonsynonymous SNV 0.038 1 24 hm5C_associated_SNPs_86126 0 0 0 0 2 C22orf15 chr22:24106980 3'AG 24106980 Downstream 67bp
chr22 24107046 24107046 1 + G A COAD 24107043 + 24107023 24107063 41 CTGGAGGAAGCGTATGGGCACTCGGCGAGGCCGCCATGAGC CTGGAGGAAGCGTATGGGCACTCAGCGAGGCCGCCATGAGC < 41bp 0.714330246856294 0.458748011614953 0.3445591 0.22004241 prediction 0.428660493712587 Functional Loss - C22orf15 ENSG00000169314 CDS Human protein_coding chr22:24107043 chr22:24107046 nonsynonymous SNV 0.038 1 24 hm5C_associated_SNPs_86126 0 0 0 0 2 C22orf15 chr22:24107089 5'GT 24107089 Upstream 44bp
chr2 163204219 163204219 1 + C T SKCM 163204216 + 163204196 163204236 41 ACTTATTCCTCAGCTGGTGACTCCGTGTATACTTACTTCAG ACTTATTCCTCAGCTGGTGACTCTGTGTATACTTACTTCAG < 41bp 0.746604998010011 0.532277645526777 0.082327545 0.04309103 prediction 0.428654704966469 Functional Loss - GCA ENSG00000115271 CDS Human protein_coding chr2:163204216 chr2:163204219 synonymous SNV . 0 24 hm5C_associated_SNPs_86128 0 0 1 0 1 GCA chr2:163204252 5'GT 163204252 Upstream 34bp
chr2 3482694 3482694 1 + G T GBM 3482691 + 3482671 3482711 41 AGAGATCTTAAGGATGGATCCAAGAAACGCAGTGGTAAGAT AGAGATCTTAAGGATGGATCCAATAAACGCAGTGGTAAGAT < 41bp 0.714325360595005 0.321999023661537 0.48034915 0.105036765 prediction 0.428650721190009 Functional Loss - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3482691 chr2:3482694 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_86129 0 0 1 0 2 TRAPPC12 chr2:3482617 3'AG 3482617 Downstream 78bp
chr2 3482694 3482694 1 + G T GBM 3482691 + 3482671 3482711 41 AGAGATCTTAAGGATGGATCCAAGAAACGCAGTGGTAAGAT AGAGATCTTAAGGATGGATCCAATAAACGCAGTGGTAAGAT < 41bp 0.714325360595005 0.321999023661537 0.48034915 0.105036765 prediction 0.428650721190009 Functional Loss - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3482691 chr2:3482694 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_86129 0 0 1 0 2 TRAPPC12 chr2:3482704 5'GT 3482704 Upstream 11bp
chr6 160560884 160560884 1 + A T KIRC 160560880 + 160560860 160560900 41 GCGGGGGCAGCCTGCCTCGTCATGATTTTTATCTCACCTGG GCGGGGGCAGCCTGCCTCGTCATGTTTTTTATCTCACCTGG < 41bp 0.714324842700246 0.391464257727193 0.27573922 0.27333435 prediction 0.428649685400491 Functional Loss - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160560880 chr6:160560884 nonsynonymous SNV 0.461 0 25 hm5C_associated_SNPs_86130 0 0 0 0 1 SLC22A1 chr6:160560899 5'GT 160560899 Upstream 16bp
chr6 160560883 160560883 1 + G T PAAD 160560880 + 160560860 160560900 41 GCGGGGGCAGCCTGCCTCGTCATGATTTTTATCTCACCTGG GCGGGGGCAGCCTGCCTCGTCATTATTTTTATCTCACCTGG < 41bp 0.714324842700246 0.312139543571316 0.27573922 0.097861975 prediction 0.428649685400491 Functional Loss - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160560880 chr6:160560883 nonsynonymous SNV 0.456 1 24 hm5C_associated_SNPs_86131 0 0 0 0 1 SLC22A1 chr6:160560899 5'GT 160560899 Upstream 17bp
chr11 123989104 123989104 1 + G T UCEC 123989101 + 123989081 123989121 41 GCTCCCAGCTGTCCTGAATCCTAGATACCAGTTCTCTGGTG GCTCCCAGCTGTCCTGAATCCTATATACCAGTTCTCTGGTG < 41bp 0.928515657422137 0.71419199841445 0.35135242 0.39222276 prediction 0.428647318015374 Functional Loss - VWA5A ENSG00000110002 CDS Human protein_coding chr11:123989101 chr11:123989104 nonsynonymous SNV 0.968 4 24 hm5C_associated_SNPs_86132 0 0 0 0 1 VWA5A chr11:123989118 5'GT 123989118 Upstream 15bp
chr19 36245352 36245352 1 + C T UCEC 36245349 + 36245329 36245369 41 ACTCAGAAAGCATGAAGATCCTACGAGAGATGTACGAACGA ACTCAGAAAGCATGAAGATCCTATGAGAGATGTACGAACGA < 41bp 0.714322579500318 0.496256666546542 0.23420656 0.2086077 prediction 0.428645159000637 Functional Loss - LIN37 ENSG00000267796 CDS Human protein_coding chr19:36245349 chr19:36245352 stopgain 0.998 1 24 hm5C_associated_SNPs_86135 0 0 1 0 1 LIN37 chr19:36245294 3'AG 36245294 Downstream 59bp
chr8 36780052 36780052 1 + G A STAD 36780049 + 36780029 36780069 41 TTATTGAACAGCTTGGTGGACTGGAAGGGTCCCTCCAAGAA TTATTGAACAGCTTGGTGGACTGAAAGGGTCCCTCCAAGAA < 41bp 0.793755721365684 0.579434017517527 0.15341893 0.08802837 prediction 0.428643407696313 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36780049 chr8:36780052 nonsynonymous SNV 0.851 1 24 hm5C_associated_SNPs_86136 0 0 0 0 2 KCNU1 chr8:36780008 3'AG 36780008 Downstream 45bp
chr8 36780052 36780052 1 + G A STAD 36780049 + 36780029 36780069 41 TTATTGAACAGCTTGGTGGACTGGAAGGGTCCCTCCAAGAA TTATTGAACAGCTTGGTGGACTGAAAGGGTCCCTCCAAGAA < 41bp 0.793755721365684 0.579434017517527 0.15341893 0.08802837 prediction 0.428643407696313 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36780049 chr8:36780052 nonsynonymous SNV 0.851 1 24 hm5C_associated_SNPs_86136 0 0 0 0 2 KCNU1 chr8:36780147 5'GT 36780147 Upstream 96bp
chr17 30362635 30362635 1 + G A UCEC 30362632 + 30362612 30362652 41 ACAACACTTAAGAACATTCTCACGATGACTGTTGAACTGGA ACAACACTTAAGAACATTCTCACAATGACTGTTGAACTGGA < 41bp 0.759527168603174 0.545211392958894 0.1897105 0.11691359 prediction 0.428631551288561 Functional Loss - LRRC37B ENSG00000185158 CDS Human protein_coding chr17:30362632 chr17:30362635 synonymous SNV . 0 24 hm5C_associated_SNPs_86140 0 0 1 0 2 LRRC37B chr17:30362584 3'AG 30362584 Downstream 52bp
chr17 30362635 30362635 1 + G A UCEC 30362632 + 30362612 30362652 41 ACAACACTTAAGAACATTCTCACGATGACTGTTGAACTGGA ACAACACTTAAGAACATTCTCACAATGACTGTTGAACTGGA < 41bp 0.759527168603174 0.545211392958894 0.1897105 0.11691359 prediction 0.428631551288561 Functional Loss - LRRC37B ENSG00000185158 CDS Human protein_coding chr17:30362632 chr17:30362635 synonymous SNV . 0 24 hm5C_associated_SNPs_86140 0 0 1 0 2 LRRC37B chr17:30362658 5'GT 30362658 Upstream 24bp
chr16 31051298 31051298 1 + G C rs550241126 31051294 + 31051274 31051314 41 CAGCAGCCTGGGGGGCAGGGCAGAGCCTCCAGTCGGACCCC CAGCAGCCTGGGGGGCAGGGCAGACCCTCCAGTCGGACCCC < 41bp 0.714311834546954 0.434967446812917 0.4082998 0.20005056 prediction 0.428623669093907 Functional Loss - STX4 ENSG00000103496 UTR3 Human protein_coding chr16:31051294 chr16:31051298 . . 0 25 hm5C_associated_SNPs_86141 0 0 0 0 1 STX4 chr16:31051233 3'AG 31051233 Downstream 66bp
chr3 3178967 3178967 1 + G A UCEC 3178964 + 3178944 3178984 41 AATTATTTGTCAAAGAGAATCACGAATTAAGAATAGCAGGA AATTATTTGTCAAAGAGAATCACAAATTAAGAATAGCAGGA < 41bp 0.741988234907487 0.527676433674046 0.15241009 0.2577794 prediction 0.428623602466881 Functional Loss - TRNT1 ENSG00000072756 CDS Human protein_coding chr3:3178964 chr3:3178967 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_86142 0 0 1 0 1 TRNT1 chr3:3178944 3'AG 3178944 Downstream 24bp
chr1 155288061 155288061 1 - C T SKCM 155288064 - 155288044 155288084 41 ACCTGCAGGAAGAGCTCGATCAGGTTCAGGTAATAGGGCTG ACCTGCAGGAAGAGCTCGATCAGATTCAGGTAATAGGGCTG < 41bp 0.799688441436523 0.585383678519447 0.8704994 0.6816071 prediction 0.428609525834152 Functional Loss - FDPS ENSG00000160752 CDS Human protein_coding chr1:155288064 chr1:155288061 synonymous SNV . 0 24 hm5C_associated_SNPs_86144 0 0 0 0 1 FDPS chr1:155288056 5'GT 155288056 Upstream 6bp
chr20 37570728 37570728 1 + G T LUAD 37570725 + 37570705 37570745 41 AGGCTCTCCTCTCTCAATTTCTGGATATGTGCATGGATCTG AGGCTCTCCTCTCTCAATTTCTGTATATGTGCATGGATCTG < 41bp 0.714303169978685 0.325183813556583 0.3821215 0.32312253 prediction 0.42860633995737 Functional Loss - FAM83D ENSG00000101447 CDS Human protein_coding chr20:37570725 chr20:37570728 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_86147 0 0 1 0 1 FAM83D chr20:37570769 5'GT 37570769 Upstream 42bp
chrX 48545242 48545242 1 + G A SKCM 48545239 + 48545219 48545259 41 GAACCCTGACATCACGAGTTCACGATACCGTGGGCTCCCAG GAACCCTGACATCACGAGTTCACAATACCGTGGGCTCCCAG < 41bp 0.805163016627176 0.590862879917089 0.094077826 0.057517648 prediction 0.428600273420174 Functional Loss - WAS ENSG00000015285 CDS Human protein_coding chrX:48545239 chrX:48545242 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_86148 0 0 0 0 1 WAS chrX:48545170 3'AG 48545170 Downstream 73bp
chr3 139065745 139065745 1 + G A UCEC 139065742 + 139065722 139065762 41 GAATCTGGTAGCCCAGAGACCAAGAAACCTACATTTATGGA GAATCTGGTAGCCCAGAGACCAAAAAACCTACATTTATGGA < 41bp 0.731458132404 0.517158421103789 0.06504688 0.16951132 prediction 0.428599422600423 Functional Loss - MRPS22 ENSG00000175110 CDS Human protein_coding chr3:139065742 chr3:139065745 synonymous SNV . 0 24 hm5C_associated_SNPs_86149 0 0 1 0 2 MRPS22 chr3:139065720 3'AG 139065720 Downstream 26bp
chr3 139065745 139065745 1 + G A UCEC 139065742 + 139065722 139065762 41 GAATCTGGTAGCCCAGAGACCAAGAAACCTACATTTATGGA GAATCTGGTAGCCCAGAGACCAAAAAACCTACATTTATGGA < 41bp 0.731458132404 0.517158421103789 0.06504688 0.16951132 prediction 0.428599422600423 Functional Loss - MRPS22 ENSG00000175110 CDS Human protein_coding chr3:139065742 chr3:139065745 synonymous SNV . 0 24 hm5C_associated_SNPs_86149 0 0 1 0 2 MRPS22 chr3:139065723 3'AG 139065723 Downstream 23bp
chrX 30265555 30265555 1 + G C rs2074794 30265551 + 30265531 30265571 41 AGTGGGGTGCAGCGTCTGGTCAGCGGAGGGTGAATTCTCAG AGTGGGGTGCAGCGTCTGGTCAGCCGAGGGTGAATTCTCAG < 41bp 0.828819695858761 0.614524509326427 0.85539615 0.5755404 prediction 0.428590373064668 Functional Loss - MAGEB1 ENSG00000214107 UTR5 Human protein_coding chrX:30265551 chrX:30265555 . . 0 25 hm5C_associated_SNPs_86151 0 0 1 0 2 MAGEB1 chrX:30265507 3'AG 30265507 Downstream 49bp
chrX 30265555 30265555 1 + G C rs2074794 30265551 + 30265531 30265571 41 AGTGGGGTGCAGCGTCTGGTCAGCGGAGGGTGAATTCTCAG AGTGGGGTGCAGCGTCTGGTCAGCCGAGGGTGAATTCTCAG < 41bp 0.828819695858761 0.614524509326427 0.85539615 0.5755404 prediction 0.428590373064668 Functional Loss - MAGEB1 ENSG00000214107 UTR5 Human protein_coding chrX:30265551 chrX:30265555 . . 0 25 hm5C_associated_SNPs_86151 0 0 1 0 2 MAGEB1 chrX:30265589 5'GT 30265589 Upstream 35bp
chr11 22364886 22364886 1 + A T LUAD 22364882 + 22364862 22364902 41 ATCACTCAGATTCCGGGAGGCTACATCGCGTCTCGGCTGGC ATCACTCAGATTCCGGGAGGCTACTTCGCGTCTCGGCTGGC < 41bp 0.714294491281932 0.365530178411269 0.9113419 0.7677114 prediction 0.428588982563865 Functional Loss - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22364882 chr11:22364886 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_86152 0 0 0 0 2 SLC17A6 chr11:22364793 3'AG 22364793 Downstream 94bp
chr11 22364886 22364886 1 + A T LUAD 22364882 + 22364862 22364902 41 ATCACTCAGATTCCGGGAGGCTACATCGCGTCTCGGCTGGC ATCACTCAGATTCCGGGAGGCTACTTCGCGTCTCGGCTGGC < 41bp 0.714294491281932 0.365530178411269 0.9113419 0.7677114 prediction 0.428588982563865 Functional Loss - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22364882 chr11:22364886 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_86152 0 0 0 0 2 SLC17A6 chr11:22364911 5'GT 22364911 Upstream 26bp
chr6 160517599 160517599 1 + G A UCEC 160517596 + 160517576 160517616 41 ACGGGATCCCCGAGTTCAGTCACGAGACTGCCGACTGCCAG ACGGGATCCCCGAGTTCAGTCACAAGACTGCCGACTGCCAG < 41bp 0.776188608640175 0.561894452999602 0.33512992 0.28123373 prediction 0.428588311281146 Functional Loss - IGF2R ENSG00000197081 CDS Human protein_coding chr6:160517596 chr6:160517599 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_86153 0 0 1 0 1 IGF2R chr6:160517657 5'GT 160517657 Upstream 59bp
chr10 88419114 88419114 1 + C T LUAD 88419111 + 88419091 88419131 41 CTGGGACTACATGAGCTTCACGCCGGCCGTGCGTGCCTACA CTGGGACTACATGAGCTTCACGCTGGCCGTGCGTGCCTACA < 41bp 0.714293353401824 0.497743665738734 0.17729273 0.1587489 prediction 0.428586706803648 Functional Loss - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88419111 chr10:88419114 nonsynonymous SNV 0.155 2 24 hm5C_associated_SNPs_86154 0 0 0 0 1 OPN4 chr10:88419054 3'AG 88419054 Downstream 61bp
chr22 40802206 40802206 1 + G A CESC 40802203 + 40802183 40802223 41 TCCCGGGTGCTGTTCCAGCTCACGCTGGGCATGCTGCACCT TCCCGGGTGCTGTTCCAGCTCACACTGGGCATGCTGCACCT < 41bp 0.818843170782732 0.604552452251791 0.18694934 0.07916731 prediction 0.428581437061882 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40802203 chr22:40802206 synonymous SNV . 0 24 hm5C_associated_SNPs_86156 0 0 1 0 1 SGSM3 chr22:40802227 5'GT 40802227 Upstream 22bp
chr10 13687102 13687102 1 + G A rs144301860 13687099 + 13687079 13687119 41 GTGTGTGCCCCAGCTCGACTCTCGGTGGTCTCCAGGCTGCA GTGTGTGCCCCAGCTCGACTCTCAGTGGTCTCCAGGCTGCA < 41bp 0.71428601565006 0.465825536823545 0.8712369 0.31439692 prediction 0.42857203130012 Functional Loss - FRMD4A ENSG00000151474 UTR3 Human protein_coding chr10:13687099 chr10:13687102 . . 0 24 hm5C_associated_SNPs_86161 0 0 1 0 1 FRMD4A chr10:13687136 5'GT 13687136 Upstream 35bp
chr5 72333647 72333647 1 + G A rs143130491 72333644 + 72333624 72333664 41 CCCAGGTTGGAATGCAATGGCGCGATCTTGGCTTACTGCAT CCCAGGTTGGAATGCAATGGCGCAATCTTGGCTTACTGCAT < 41bp 0.714282929670099 0.476976138404996 0.36333257 0.11327872 prediction 0.428565859340199 Functional Loss - FCHO2 ENSG00000157107 CDS Human protein_coding chr5:72333644 chr5:72333647 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_86163 0 0 0 0 1 FCHO2 chr5:72333604 3'AG 72333604 Downstream 44bp
chr2 3749190 3749190 1 + G A UCEC 3749187 + 3749167 3749207 41 ATCAGGCAAAAGTGGATTCTCCCGGCCCACAAGTGGAAACC ATCAGGCAAAAGTGGATTCTCCCAGCCCACAAGTGGAAACC < 41bp 0.714278187258985 0.46510240360599 0.8192519 0.33060664 prediction 0.42855637451797 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3749187 chr2:3749190 synonymous SNV . 0 24 hm5C_associated_SNPs_86166 0 0 0 0 2 ALLC chr2:3749102 3'AG 3749102 Downstream 89bp
chr2 3749190 3749190 1 + G A UCEC 3749187 + 3749167 3749207 41 ATCAGGCAAAAGTGGATTCTCCCGGCCCACAAGTGGAAACC ATCAGGCAAAAGTGGATTCTCCCAGCCCACAAGTGGAAACC < 41bp 0.714278187258985 0.46510240360599 0.8192519 0.33060664 prediction 0.42855637451797 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3749187 chr2:3749190 synonymous SNV . 0 24 hm5C_associated_SNPs_86166 0 0 0 0 2 ALLC chr2:3749226 5'GT 3749226 Upstream 37bp
chr22 25598739 25598739 1 + C T UCEC 25598736 + 25598716 25598756 41 AGCCTGCTGGAGAAGGTGGGCTCCATCCAAGTGGAGTCCGG AGCCTGCTGGAGAAGGTGGGCTCTATCCAAGTGGAGTCCGG < 41bp 0.743319537895258 0.529045077261068 0.9063694 0.8776649 prediction 0.42854892126838 Functional Loss - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25598736 chr22:25598739 synonymous SNV . 0 24 hm5C_associated_SNPs_86169 1 0 0 0 2 CRYBB3 chr22:25598641 3'AG 25598641 Downstream 99bp
chr22 25598739 25598739 1 + C T UCEC 25598736 + 25598716 25598756 41 AGCCTGCTGGAGAAGGTGGGCTCCATCCAAGTGGAGTCCGG AGCCTGCTGGAGAAGGTGGGCTCTATCCAAGTGGAGTCCGG < 41bp 0.743319537895258 0.529045077261068 0.9063694 0.8776649 prediction 0.42854892126838 Functional Loss - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25598736 chr22:25598739 synonymous SNV . 0 24 hm5C_associated_SNPs_86169 1 0 0 0 2 CRYBB3 chr22:25598759 5'GT 25598759 Upstream 21bp
chr16 49407919 49407919 1 + T C GBM 49407918 + 49407898 49407938 41 GAAATACATGTGGAAGACTGCTGAAGATAGGCGCATGTCTG GAAATACATGTGGAAGACTGCCGAAGATAGGCGCATGTCTG < 41bp 0.761263291584914 0.54698949283245 0.23352656 0.22096518 prediction 0.428547597504929 Functional Loss - C16orf78 ENSG00000166152 CDS Human protein_coding chr16:49407918 chr16:49407919 synonymous SNV . 0 22 hm5C_associated_SNPs_86171 0 0 0 0 1 C16orf78 chr16:49408000 5'GT 49408000 Upstream 82bp
chr5 110443080 110443080 1 + C T UCEC 110443077 + 110443057 110443097 41 AACCTGGAATTATCAGAAATCTACAATAGGCGCTTACTTTC AACCTGGAATTATCAGAAATCTATAATAGGCGCTTACTTTC < 41bp 0.755131430544841 0.540858841840851 0.9273911 0.6927245 prediction 0.428545177407981 Functional Loss - WDR36 ENSG00000134987 CDS Human protein_coding chr5:110443077 chr5:110443080 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_86172 0 0 1 0 2 WDR36 chr5:110442993 3'AG 110442993 Downstream 88bp
chr5 110443080 110443080 1 + C T UCEC 110443077 + 110443057 110443097 41 AACCTGGAATTATCAGAAATCTACAATAGGCGCTTACTTTC AACCTGGAATTATCAGAAATCTATAATAGGCGCTTACTTTC < 41bp 0.755131430544841 0.540858841840851 0.9273911 0.6927245 prediction 0.428545177407981 Functional Loss - WDR36 ENSG00000134987 CDS Human protein_coding chr5:110443077 chr5:110443080 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_86172 0 0 1 0 2 WDR36 chr5:110443138 5'GT 110443138 Upstream 59bp
chr11 122720892 122720892 1 + G T LUAD 122720890 + 122720870 122720910 41 CCTCCAGTGGCTGACCCCCTCAGGGTTCACCATTTTTTTAA CCTCCAGTGGCTGACCCCCTCATGGTTCACCATTTTTTTAA < 41bp 0.91156618009174 0.697297299986924 0.92223644 0.45612738 prediction 0.428537760209633 Functional Loss - CRTAM ENSG00000109943 CDS Human protein_coding chr11:122720890 chr11:122720892 nonsynonymous SNV 0.192 4 23 hm5C_associated_SNPs_86174 0 0 0 0 1 CRTAM chr11:122720922 5'GT 122720922 Upstream 31bp
chr5 149919746 149919746 1 + C T UCEC 149919743 + 149919723 149919763 41 TCCTGCACTCCTGGACGAACCTCCGGCTGCAGACACTGCCC TCCTGCACTCCTGGACGAACCTCTGGCTGCAGACACTGCCC < 41bp 0.714264808219867 0.484959793178965 0.17995116 0.06749675 prediction 0.428529616439734 Functional Loss - NDST1 ENSG00000070614 CDS Human protein_coding chr5:149919743 chr5:149919746 nonsynonymous SNV 0.964 3 24 hm5C_associated_SNPs_86178 0 0 1 0 1 NDST1 chr5:149919826 5'GT 149919826 Upstream 81bp
chr5 149901282 149901282 1 + G A SKCM 149901279 + 149901259 149901299 41 ACGCCTGGAACCGGGAGCTGCTGGACAAGTACTGTGTGGCC ACGCCTGGAACCGGGAGCTGCTGAACAAGTACTGTGTGGCC < 41bp 0.786373275075076 0.572111018317001 0.8054749 0.56725734 prediction 0.42852451351615 Functional Loss - NDST1 ENSG00000070614 CDS Human protein_coding chr5:149901279 chr5:149901282 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_86180 0 0 1 0 1 NDST1 chr5:149901329 5'GT 149901329 Upstream 48bp
chr20 3025433 3025433 1 + C T UCEC 3025431 + 3025411 3025451 41 ATGCCCTGGGAGGGCAGGACCACGGCCCAGTGGTCCCTTCA ATGCCCTGGGAGGGCAGGACCATGGCCCAGTGGTCCCTTCA < 41bp 0.817679393913543 0.603418338535405 0.7292069 0.2993806 prediction 0.428522110756275 Functional Loss - GNRH2 ENSG00000125787 CDS Human protein_coding chr20:3025431 chr20:3025433 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_86182 0 0 0 0 3 GNRH2 chr20:3025346 3'AG 3025346 Downstream 88bp
chr20 3025433 3025433 1 + C T UCEC 3025431 + 3025411 3025451 41 ATGCCCTGGGAGGGCAGGACCACGGCCCAGTGGTCCCTTCA ATGCCCTGGGAGGGCAGGACCATGGCCCAGTGGTCCCTTCA < 41bp 0.817679393913543 0.603418338535405 0.7292069 0.2993806 prediction 0.428522110756275 Functional Loss - GNRH2 ENSG00000125787 CDS Human protein_coding chr20:3025431 chr20:3025433 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_86182 0 0 0 0 3 GNRH2 chr20:3025349 3'AG 3025349 Downstream 85bp
chr20 3025433 3025433 1 + C T UCEC 3025431 + 3025411 3025451 41 ATGCCCTGGGAGGGCAGGACCACGGCCCAGTGGTCCCTTCA ATGCCCTGGGAGGGCAGGACCATGGCCCAGTGGTCCCTTCA < 41bp 0.817679393913543 0.603418338535405 0.7292069 0.2993806 prediction 0.428522110756275 Functional Loss - GNRH2 ENSG00000125787 CDS Human protein_coding chr20:3025431 chr20:3025433 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_86182 0 0 0 0 3 GNRH2 chr20:3025482 5'GT 3025482 Upstream 50bp
chrX 152613304 152613304 1 + C T UCEC 152613302 + 152613282 152613322 41 ACAAATGCGGCAAGGCCTTCCGCCGGAGCTCCGGCCTCAGT ACAAATGCGGCAAGGCCTTCCGTCGGAGCTCCGGCCTCAGT < 41bp 0.714255008548836 0.472173557944225 0.33771515 0.34419668 prediction 0.428510017097671 Functional Loss - ZNF275 ENSG00000063587 CDS Human protein_coding chrX:152613302 chrX:152613304 synonymous SNV . 0 23 hm5C_associated_SNPs_86188 0 0 1 0 1 ZNF275 chrX:152613212 3'AG 152613212 Downstream 93bp
chr11 85975253 85975253 1 + T C SKCM 85975252 + 85975232 85975272 41 GGAATATCCAGACGGACACTCTGGTGGCAATATTTGGAGGC GGAATATCCAGACGGACACTCCGGTGGCAATATTTGGAGGC < 41bp 0.714254429609775 0.466003394640433 0.49688026 0.7262645 prediction 0.42850885921955 Functional Loss - EED ENSG00000074266 CDS Human protein_coding chr11:85975252 chr11:85975253 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_86189 0 0 1 2 2 EED chr11:85975214 3'AG 85975214 Downstream 40bp
chr11 85975253 85975253 1 + T C SKCM 85975252 + 85975232 85975272 41 GGAATATCCAGACGGACACTCTGGTGGCAATATTTGGAGGC GGAATATCCAGACGGACACTCCGGTGGCAATATTTGGAGGC < 41bp 0.714254429609775 0.466003394640433 0.49688026 0.7262645 prediction 0.42850885921955 Functional Loss - EED ENSG00000074266 CDS Human protein_coding chr11:85975252 chr11:85975253 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_86189 0 0 1 2 2 EED chr11:85975305 5'GT 85975305 Upstream 53bp
chr2 27302058 27302058 1 + G A SKCM 27302055 + 27302035 27302075 41 TTCCAGTGGGGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGA TTCCAGTGGGGCCCTCAGCCCCGAGGGGCCCCAGGCCCAGA < 41bp 0.81320744835332 0.598953275552822 0.8802777 0.057228804 prediction 0.428508345600996 Functional Loss - EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302055 chr2:27302058 nonsynonymous SNV 0.112 1 24 hm5C_associated_SNPs_86191 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 46bp
chr16 2514087 2514087 1 + G A LIHC 2514084 + 2514064 2514104 41 CATGTCCTGTGGGGAGGCCCCCCGGAGCCTCGCCGTCCTGT CATGTCCTGTGGGGAGGCCCCCCAGAGCCTCGCCGTCCTGT < 41bp 0.714247351301972 0.462770862100485 0.89521873 0.39873493 prediction 0.428494702603945 Functional Loss - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2514084 chr16:2514087 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_86193 0 0 0 0 1 C16orf59 chr16:2514040 3'AG 2514040 Downstream 48bp
chr16 2514086 2514086 1 + C T SKCM 2514084 + 2514064 2514104 41 CATGTCCTGTGGGGAGGCCCCCCGGAGCCTCGCCGTCCTGT CATGTCCTGTGGGGAGGCCCCCTGGAGCCTCGCCGTCCTGT < 41bp 0.714247351301972 0.471986236907298 0.89521873 0.58124304 prediction 0.428494702603945 Functional Loss - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2514084 chr16:2514086 synonymous SNV . 0 23 hm5C_associated_SNPs_86194 0 0 0 0 1 C16orf59 chr16:2514040 3'AG 2514040 Downstream 47bp
chr2 233323043 233323043 1 + C T SKCM 233323041 + 233323021 233323061 41 GCTCACCAGCGAGGAGGACACGCTGACCCTCGTCACCGCTG GCTCACCAGCGAGGAGGACACGTTGACCCTCGTCACCGCTG < 41bp 0.714246040408256 0.450829584929922 0.15741539 0.12043056 prediction 0.428492080816513 Functional Loss - ALPI ENSG00000163295 CDS Human protein_coding chr2:233323041 chr2:233323043 synonymous SNV . 0 23 hm5C_associated_SNPs_86195 0 0 1 0 1 ALPI chr2:233323118 5'GT 233323118 Upstream 76bp
chr22 49103656 49103656 1 + G A STAD 49103653 + 49103633 49103673 41 GGCGGGAGGATAAAGACCACCACGGTATGTGGCCCTCGGCT GGCGGGAGGATAAAGACCACCACAGTATGTGGCCCTCGGCT < 41bp 0.804235669025251 0.589992162025871 0.32266796 0.56218684 prediction 0.42848701399876 Functional Loss - FAM19A5 ENSG00000219438 CDS Human protein_coding chr22:49103653 chr22:49103656 synonymous SNV . 0 24 hm5C_associated_SNPs_86197 0 0 0 0 1 FAM19A5 chr22:49103656 5'GT 49103656 Upstream 1bp
chr17 78014006 78014006 1 + C T UCEC 78014004 + 78013984 78014024 41 TCACCTCCCCAGAGCCATCCCACGGAGTCTTAGGCCCGTCG TCACCTCCCCAGAGCCATCCCATGGAGTCTTAGGCCCGTCG < 41bp 0.714243113274413 0.46909398007487 0.37982303 0.4408254 prediction 0.428486226548826 Functional Loss - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78014004 chr17:78014006 synonymous SNV . 0 23 hm5C_associated_SNPs_86200 0 0 0 0 1 CCDC40 chr17:78014069 5'GT 78014069 Upstream 64bp
chr16 56920956 56920956 1 + C T SKCM 56920954 + 56920934 56920974 41 AGGAAGATCAAGGCCTTCTACTCGGATGTCATTGCCGAGGA AGGAAGATCAAGGCCTTCTACTTGGATGTCATTGCCGAGGA < 41bp 0.872307258536738 0.658064593539947 0.30022532 0.2395612 prediction 0.428485329993581 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56920954 chr16:56920956 nonsynonymous SNV 0.507 2 23 hm5C_associated_SNPs_86201 0 0 0 0 2 SLC12A3 chr16:56920865 3'AG 56920865 Downstream 92bp
chr16 56920956 56920956 1 + C T SKCM 56920954 + 56920934 56920974 41 AGGAAGATCAAGGCCTTCTACTCGGATGTCATTGCCGAGGA AGGAAGATCAAGGCCTTCTACTTGGATGTCATTGCCGAGGA < 41bp 0.872307258536738 0.658064593539947 0.30022532 0.2395612 prediction 0.428485329993581 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56920954 chr16:56920956 nonsynonymous SNV 0.507 2 23 hm5C_associated_SNPs_86201 0 0 0 0 2 SLC12A3 chr16:56921005 5'GT 56921005 Upstream 50bp
chr19 51361827 51361827 1 + G T rs191588971 51361824 + 51361804 51361844 41 TTCATGCTGTGTGCTGGACGCTGGACAGGGGGCAAAAGCAC TTCATGCTGTGTGCTGGACGCTGTACAGGGGGCAAAAGCAC < 41bp 0.931937183450334 0.717695453394752 0.1847919 0.07538861 prediction 0.428483460111162 Functional Loss - KLK3 ENSG00000142515 CDS Human protein_coding chr19:51361824 chr19:51361827 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_86203 0 0 0 0 1 KLK3 chr19:51361851 5'GT 51361851 Upstream 25bp
chr3 129221605 129221605 1 + G T LUSC 129221603 + 129221583 129221623 41 AGGCTGAGCGCGAGCCCCTGCTGCTGTGCGCTACCTACCTC AGGCTGAGCGCGAGCCCCTGCTTCTGTGCGCTACCTACCTC < 41bp 0.714241369081961 0.392384879654449 0.20266074 0.1422804 prediction 0.428482738163922 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129221603 chr3:129221605 synonymous SNV . 0 23 hm5C_associated_SNPs_86205 0 0 1 0 1 IFT122 chr3:129221554 3'AG 129221554 Downstream 52bp
chr14 77928570 77928570 1 + C T UCEC 77928567 + 77928547 77928587 41 CCCAATTTGTCTGATGAAAACAGCGTGGATGAAGTGGAGGT CCCAATTTGTCTGATGAAAACAGTGTGGATGAAGTGGAGGT < 41bp 0.714240401803182 0.490842232564865 0.102968305 0.06639966 prediction 0.428480803606365 Functional Loss - AHSA1 ENSG00000100591 CDS Human protein_coding chr14:77928567 chr14:77928570 synonymous SNV . 0 24 hm5C_associated_SNPs_86206 0 0 1 0 2 AHSA1 chr14:77928503 3'AG 77928503 Downstream 68bp
chr14 77928570 77928570 1 + C T UCEC 77928567 + 77928547 77928587 41 CCCAATTTGTCTGATGAAAACAGCGTGGATGAAGTGGAGGT CCCAATTTGTCTGATGAAAACAGTGTGGATGAAGTGGAGGT < 41bp 0.714240401803182 0.490842232564865 0.102968305 0.06639966 prediction 0.428480803606365 Functional Loss - AHSA1 ENSG00000100591 CDS Human protein_coding chr14:77928567 chr14:77928570 synonymous SNV . 0 24 hm5C_associated_SNPs_86206 0 0 1 0 2 AHSA1 chr14:77928585 5'GT 77928585 Upstream 16bp
chr1 167962640 167962640 1 + G A UCEC 167962637 + 167962617 167962657 41 ACCCGAAAGATGATACAGCACGAGAACTTAAAACTCCTTCT ACCCGAAAGATGATACAGCACGAAAACTTAAAACTCCTTCT < 41bp 0.756222219885021 0.541992629420612 0.00590989 0.0021708608 prediction 0.428459180928819 Functional Loss - DCAF6 ENSG00000143164 CDS Human protein_coding chr1:167962637 chr1:167962640 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_86210 0 0 0 0 1 DCAF6 chr1:167962678 5'GT 167962678 Upstream 39bp
chr1 92528699 92528699 1 + T C UCEC 92528698 + 92528678 92528718 41 ATTCATGGAGGTTGAGATGGCTGAAGTCACAAAGATTTATG ATTCATGGAGGTTGAGATGGCCGAAGTCACAAAGATTTATG < 41bp 0.767084089073816 0.552855168925258 0.13355696 0.2701853 prediction 0.428457840297116 Functional Loss - EPHX4 ENSG00000172031 CDS Human protein_coding chr1:92528698 chr1:92528699 synonymous SNV . 0 22 hm5C_associated_SNPs_86211 0 0 1 0 1 EPHX4 chr1:92528612 3'AG 92528612 Downstream 88bp
chr6 19838366 19838366 1 + G T LUAD 19838364 + 19838344 19838384 41 CGCCCGCGCCGCCACACCACCCGGCCGGGACCTGTCCAGCC CGCCCGCGCCGCCACACCACCCTGCCGGGACCTGTCCAGCC < 41bp 0.714227637008086 0.366598950497529 0.18928131 0.0508447 prediction 0.428455274016173 Functional Loss - ID4 ENSG00000172201 CDS Human protein_coding chr6:19838364 chr6:19838366 synonymous SNV . 0 23 hm5C_associated_SNPs_86212 0 0 0 0 1 ID4 chr6:19838426 5'GT 19838426 Upstream 61bp
chr2 173879313 173879313 1 + G A BLCA 173879310 + 173879290 173879330 41 CCATGTATGGAGACCTCCTGCAAGAGGATGACGTGTCTATG CCATGTATGGAGACCTCCTGCAAAAGGATGACGTGTCTATG < 41bp 0.769121661576334 0.554894699630265 0.32877296 0.050992876 prediction 0.428453923892138 Functional Loss - RAPGEF4 ENSG00000091428 CDS Human protein_coding chr2:173879310 chr2:173879313 nonsynonymous SNV 0.813 1 24 hm5C_associated_SNPs_86213 0 0 0 0 1 RAPGEF4 chr2:173879342 5'GT 173879342 Upstream 30bp
chr16 55523654 55523654 1 + C T rs16955236 55523651 + 55523631 55523671 41 AAATATGAGAGCTGCACCAGCGCCGGCCGCAGTGACGGAAA AAATATGAGAGCTGCACCAGCGCTGGCCGCAGTGACGGAAA < 41bp 0.714223912206449 0.484963282809884 0.32210714 0.14125064 prediction 0.428447824412898 Functional Loss - MMP2 ENSG00000087245 CDS Human protein_coding chr16:55523651 chr16:55523654 synonymous SNV . 0 24 hm5C_associated_SNPs_86214 1 0 0 0 2 MMP2 chr16:55523563 3'AG 55523563 Downstream 92bp
chr16 55523654 55523654 1 + C T rs16955236 55523651 + 55523631 55523671 41 AAATATGAGAGCTGCACCAGCGCCGGCCGCAGTGACGGAAA AAATATGAGAGCTGCACCAGCGCTGGCCGCAGTGACGGAAA < 41bp 0.714223912206449 0.484963282809884 0.32210714 0.14125064 prediction 0.428447824412898 Functional Loss - MMP2 ENSG00000087245 CDS Human protein_coding chr16:55523651 chr16:55523654 synonymous SNV . 0 24 hm5C_associated_SNPs_86214 1 0 0 0 2 MMP2 chr16:55523736 5'GT 55523736 Upstream 83bp
chr3 149375012 149375012 1 + G A THYM 149375009 + 149374989 149375029 41 GACAGAGTTGAAGAGGGCTTCGAGGTCTGTGTCTAGGTCCT GACAGAGTTGAAGAGGGCTTCGAAGTCTGTGTCTAGGTCCT < 41bp 0.78598937782313 0.571770630551232 0.79467565 0.2925917 prediction 0.428437494543796 Functional Loss - WWTR1 ENSG00000018408 CDS Human antisense chr3:149375009 chr3:149375012 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_86218 0 0 0 0 1 WWTR1 chr3:149375109 5'GT 149375109 Upstream 98bp
chr15 57910263 57910263 1 + G A SKCM 57910260 + 57910240 57910280 41 CTGAGCAATGGAGAACCTACCAGGAAACTTCCTCAGGGTGT CTGAGCAATGGAGAACCTACCAGAAAACTTCCTCAGGGTGT < 41bp 0.791695476059827 0.577478734812269 0.8954519 0.7695795 prediction 0.428433482495117 Functional Loss - GCOM1;MYZAP ENSG00000137878;ENSG00000263155 CDS Human other chr15:57910260 chr15:57910263 synonymous SNV . 0 24 hm5C_associated_SNPs_86219 0 0 0 2 1 GCOM1;MYZAP chr15:57910231 3'AG 57910231 Downstream 33bp
chr4 57889915 57889915 1 + G A GBM 57889912 + 57889892 57889932 41 CTTGTGGTATTCAGTATAGACAAGAGGTAGGTATCTTTGAT CTTGTGGTATTCAGTATAGACAAAAGGTAGGTATCTTTGAT < 41bp 0.75906182315912 0.5448491799291 0.40348494 0.19536367 prediction 0.428425286460039 Functional Loss - POLR2B ENSG00000047315 CDS Human protein_coding chr4:57889912 chr4:57889915 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_86223 0 0 1 0 2 POLR2B chr4:57889828 3'AG 57889828 Downstream 88bp
chr4 57889915 57889915 1 + G A GBM 57889912 + 57889892 57889932 41 CTTGTGGTATTCAGTATAGACAAGAGGTAGGTATCTTTGAT CTTGTGGTATTCAGTATAGACAAAAGGTAGGTATCTTTGAT < 41bp 0.75906182315912 0.5448491799291 0.40348494 0.19536367 prediction 0.428425286460039 Functional Loss - POLR2B ENSG00000047315 CDS Human protein_coding chr4:57889912 chr4:57889915 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_86223 0 0 1 0 2 POLR2B chr4:57889917 5'GT 57889917 Upstream 3bp
chr7 117865028 117865028 1 + G A rs10487391 117865025 + 117865005 117865045 41 CTGAAGGAATACCTTCAGATCAAGAAATATGATGTAAATAT CTGAAGGAATACCTTCAGATCAAAAAATATGATGTAAATAT < 41bp 0.757965334090823 0.543754679744801 0.17724219 0.18800595 prediction 0.428421308692043 Functional Loss - ANKRD7 ENSG00000106013 CDS Human protein_coding chr7:117865025 chr7:117865028 synonymous SNV . 0 24 hm5C_associated_SNPs_86226 0 0 0 0 1 ANKRD7 chr7:117865063 5'GT 117865063 Upstream 36bp
chr9 34977116 34977116 1 + G T BLCA 34977113 + 34977093 34977133 41 GGCTTCTGACAGTGAAGGAGCGGGAGCGAGCCCGAGCCGCC GGCTTCTGACAGTGAAGGAGCGGTAGCGAGCCCGAGCCGCC < 41bp 0.938307490544963 0.724103594411977 0.8848547 0.52629805 prediction 0.428407792265972 Functional Loss - PHF24 ENSG00000122733 CDS Human protein_coding chr9:34977113 chr9:34977116 stopgain 0.994 1 24 hm5C_associated_SNPs_86232 0 0 0 0 1 PHF24 chr9:34977080 3'AG 34977080 Downstream 37bp
chr7 127724809 127724809 1 + G C LUSC 127724808 + 127724788 127724828 41 AGAAGCTGATGGAGAACATGCGCAATGACATTGCCAGTCAC AGAAGCTGATGGAGAACATGCCCAATGACATTGCCAGTCAC < 41bp 0.714203846266129 0.405745834866927 0.120798886 0.058198065 prediction 0.428407692532259 Functional Loss - SND1 ENSG00000197157 CDS Human protein_coding chr7:127724808 chr7:127724809 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_86233 0 0 1 0 2 SND1 chr7:127724776 3'AG 127724776 Downstream 34bp
chr7 127724809 127724809 1 + G C LUSC 127724808 + 127724788 127724828 41 AGAAGCTGATGGAGAACATGCGCAATGACATTGCCAGTCAC AGAAGCTGATGGAGAACATGCCCAATGACATTGCCAGTCAC < 41bp 0.714203846266129 0.405745834866927 0.120798886 0.058198065 prediction 0.428407692532259 Functional Loss - SND1 ENSG00000197157 CDS Human protein_coding chr7:127724808 chr7:127724809 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_86233 0 0 1 0 2 SND1 chr7:127724899 5'GT 127724899 Upstream 91bp
chr17 45376713 45376713 1 + C T LUSC 45376711 + 45376691 45376731 41 TGTGGGGACTGCCTGTGTGACTCCGACTGGACCGGCTACTA TGTGGGGACTGCCTGTGTGACTTCGACTGGACCGGCTACTA < 41bp 0.71420026867485 0.410482857134848 0.027699113 0.022643268 prediction 0.4284005373497 Functional Loss - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45376711 chr17:45376713 nonsynonymous SNV 0.880 4 23 hm5C_associated_SNPs_86234 0 0 0 0 1 ITGB3 chr17:45376674 3'AG 45376674 Downstream 40bp
chr17 45376714 45376714 1 + C T UCEC 45376711 + 45376691 45376731 41 TGTGGGGACTGCCTGTGTGACTCCGACTGGACCGGCTACTA TGTGGGGACTGCCTGTGTGACTCTGACTGGACCGGCTACTA < 41bp 0.71420026867485 0.47859843243616 0.027699113 0.011356264 prediction 0.4284005373497 Functional Loss - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45376711 chr17:45376714 synonymous SNV . 0 24 hm5C_associated_SNPs_86235 0 0 0 0 1 ITGB3 chr17:45376674 3'AG 45376674 Downstream 41bp
chr3 4345118 4345118 1 + G A CESC 4345115 + 4345095 4345135 41 TGGCGGAGTTTAAGGAGAAGCCTGAGGCCCCGACTGAGCAG TGGCGGAGTTTAAGGAGAAGCCTAAGGCCCCGACTGAGCAG < 41bp 0.714196872313119 0.471016035460681 0.566897 0.22796887 prediction 0.428393744626238 Functional Loss - SETMAR ENSG00000170364 CDS Human protein_coding chr3:4345115 chr3:4345118 nonsynonymous SNV 0.014 0 24 hm5C_associated_SNPs_86237 0 0 0 0 1 SETMAR chr3:4345210 5'GT 4345210 Upstream 93bp
chrX 102884857 102884857 1 + C T rs34421776 102884855 + 102884835 102884875 41 AATTCCCAACATGGACAAACCACGCAAAGAAAATGAAGAAG AATTCCCAACATGGACAAACCATGCAAAGAAAATGAAGAAG < 41bp 0.714195851086479 0.461875892377849 0.0647777 0.021585822 prediction 0.428391702172958 Functional Loss - TCEAL1 ENSG00000172465 CDS Human protein_coding chrX:102884855 chrX:102884857 nonsynonymous SNV 0.018 0 23 hm5C_associated_SNPs_86240 0 0 1 0 1 TCEAL1 chrX:102884813 3'AG 102884813 Downstream 45bp
chr11 61205237 61205237 1 + T C LUSC 61205236 + 61205216 61205256 41 GCCTCCATGGCAGGAGAGAACTGATGAATCCATAGAAACCA GCCTCCATGGCAGGAGAGAACCGATGAATCCATAGAAACCA < 41bp 0.714195314158368 0.472849287594673 0.4471459 0.36112183 prediction 0.428390628316736 Functional Loss - SDHAF2 ENSG00000167985;ENSG00000256591 CDS Human other chr11:61205236 chr11:61205237 synonymous SNV . 0 22 hm5C_associated_SNPs_86241 0 0 1 0 1 SDHAF2 chr11:61205320 5'GT 61205320 Upstream 84bp
chr1 161682008 161682008 1 + G T LUAD 161682005 + 161681985 161682025 41 CCCAGCTAGAGATCAGAGTGCAGGGTGAGTTCGCATCAGAG CCCAGCTAGAGATCAGAGTGCAGTGTGAGTTCGCATCAGAG < 41bp 0.714191552277985 0.314850010758702 0.8809459 0.28973085 prediction 0.428383104555969 Functional Loss - FCRLA ENSG00000132185 CDS Human protein_coding chr1:161682005 chr1:161682008 nonsynonymous SNV 0.965 3 24 hm5C_associated_SNPs_86243 0 0 0 0 1 FCRLA chr1:161682008 3'AG 161682008 Downstream 1bp
chr17 72351024 72351024 1 + T C rs9891620 72351023 + 72351003 72351043 41 CAGCCCCTGGTATCCGGCATCTGGGAAAGGTCACGCTACCT CAGCCCCTGGTATCCGGCATCCGGGAAAGGTCACGCTACCT < 41bp 0.714191361765326 0.46603731337772 0.40523323 0.8855187 prediction 0.428382723530652 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72351023 chr17:72351024 nonsynonymous SNV 0.217 0 22 hm5C_associated_SNPs_86244 0 0 0 0 1 KIF19 chr17:72351080 5'GT 72351080 Upstream 57bp
chrX 73745706 73745706 1 + G A UCEC 73745703 + 73745683 73745723 41 CCACATCAGTGACTCCATCCCTGGACTTAAGAAGATCTACT CCACATCAGTGACTCCATCCCTGAACTTAAGAAGATCTACT < 41bp 0.783047562324424 0.568859453890238 0.29077703 0.12131211 prediction 0.428376216868371 Functional Loss - SLC16A2 ENSG00000147100 CDS Human protein_coding chrX:73745703 chrX:73745706 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_86246 0 0 1 0 1 SLC16A2 chrX:73745728 5'GT 73745728 Upstream 23bp
chr9 136323096 136323096 1 + G A HNSC 136323093 + 136323073 136323113 41 AGCCCCTCGCTGAGTCCAGCCACGAGTAATGCAGGGGGCTG AGCCCCTCGCTGAGTCCAGCCACAAGTAATGCAGGGGGCTG < 41bp 0.769012407182978 0.554825487784716 0.37417588 0.7265683 prediction 0.428373838796525 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136323093 chr9:136323096 synonymous SNV . 0 24 hm5C_associated_SNPs_86247 0 0 0 0 1 ADAMTS13 chr9:136323032 3'AG 136323032 Downstream 65bp
chr1 112020662 112020662 1 + G C BLCA 112020658 + 112020638 112020678 41 GCCAGCACAACTTTCAAACTCTCAGAAGAAAAGAGCAATCA GCCAGCACAACTTTCAAACTCTCACAAGAAAAGAGCAATCA < 41bp 0.714186551711203 0.446297265413326 0.026080877 0.047805846 prediction 0.428373103422406 Functional Loss - C1orf162 ENSG00000143110 CDS Human protein_coding chr1:112020658 chr1:112020662 nonsynonymous SNV 0.751 2 25 hm5C_associated_SNPs_86249 0 0 0 0 1 C1orf162 chr1:112020605 3'AG 112020605 Downstream 58bp
chr10 131557574 131557574 1 + G A rs3750824 131557571 + 131557551 131557591 41 GGCAGGCAACCCCAAAGCCGCGCGAGCAGTGGGAGGAGCAA GGCAGGCAACCCCAAAGCCGCGCAAGCAGTGGGAGGAGCAA < 41bp 0.788859761677618 0.57467428394757 0.22580758 0.13639686 prediction 0.428370955460095 Functional Loss - MGMT ENSG00000170430 CDS Human protein_coding chr10:131557571 chr10:131557574 nonsynonymous SNV 0.178 3 24 hm5C_associated_SNPs_86250 0 0 0 0 1 MGMT chr10:131557605 5'GT 131557605 Upstream 32bp
chr6 12296235 12296235 1 + G A SKCM 12296232 + 12296212 12296252 41 ACAGCGTCAAATCATCTTTTCATGATCCCAAGCTGAAAGGC ACAGCGTCAAATCATCTTTTCATAATCCCAAGCTGAAAGGC < 41bp 0.746317463335586 0.532137789798502 0.2430239 0.19592163 prediction 0.428359347074169 Functional Loss - EDN1 ENSG00000078401 CDS Human protein_coding chr6:12296232 chr6:12296235 nonsynonymous SNV 0.004 2 24 hm5C_associated_SNPs_86253 0 0 0 1 1 EDN1 chr6:12296195 3'AG 12296195 Downstream 41bp
chr8 38260109 38260109 1 + G A rs140730377 38260106 + 38260086 38260126 41 TACAGGCTGCCTGTAGGGCCCGAGGGATGAGATCACTGGGT TACAGGCTGCCTGTAGGGCCCGAAGGATGAGATCACTGGGT < 41bp 0.797458681747198 0.583280323923391 0.92398846 0.46588576 prediction 0.428356715647614 Functional Loss - LETM2 ENSG00000165046 CDS Human protein_coding chr8:38260106 chr8:38260109 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_86254 0 0 0 0 1 LETM2 chr8:38260043 3'AG 38260043 Downstream 67bp
chr19 17273174 17273174 1 + C T COAD 17273172 + 17273152 17273192 41 GTCCACAGGCCATCACTGCCCGCGACTCCATGGCCAAGTCT GTCCACAGGCCATCACTGCCCGTGACTCCATGGCCAAGTCT < 41bp 0.714171808944169 0.439373814814103 0.13832131 0.20973596 prediction 0.428343617888338 Functional Loss - MYO9B ENSG00000099331 CDS Human protein_coding chr19:17273172 chr19:17273174 synonymous SNV . 0 23 hm5C_associated_SNPs_86258 0 0 1 0 1 MYO9B chr19:17273160 3'AG 17273160 Downstream 15bp
chr12 8988136 8988136 1 + G A SKCM 8988133 + 8988113 8988153 41 GCAACAGGATTGCACAGTGGCTGGAAGTGGTACCTGAGCAA GCAACAGGATTGCACAGTGGCTGAAAGTGGTACCTGAGCAA < 41bp 0.797566969557589 0.583399191107014 0.18942353 0.13226041 prediction 0.42833555690115 Functional Loss - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:8988133 chr12:8988136 nonsynonymous SNV 0.875 0 24 hm5C_associated_SNPs_86259 0 0 0 0 1 A2ML1 chr12:8988103 3'AG 8988103 Downstream 34bp
chr10 119029632 119029632 1 + C T UCEC 119029629 + 119029609 119029649 41 TCATGGGCTACCTCGTAGACCTGCGGCACGTGTCCGTCTAT TCATGGGCTACCTCGTAGACCTGTGGCACGTGTCCGTCTAT < 41bp 0.748421699506141 0.534259759507273 0.25834468 0.19444972 prediction 0.428323879997738 Functional Loss - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119029629 chr10:119029632 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_86263 0 0 0 0 2 SLC18A2 chr10:119029582 3'AG 119029582 Downstream 51bp
chr10 119029632 119029632 1 + C T UCEC 119029629 + 119029609 119029649 41 TCATGGGCTACCTCGTAGACCTGCGGCACGTGTCCGTCTAT TCATGGGCTACCTCGTAGACCTGTGGCACGTGTCCGTCTAT < 41bp 0.748421699506141 0.534259759507273 0.25834468 0.19444972 prediction 0.428323879997738 Functional Loss - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119029629 chr10:119029632 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_86263 0 0 0 0 2 SLC18A2 chr10:119029701 5'GT 119029701 Upstream 70bp
chr17 78082391 78082391 1 + G A THYM 78082388 + 78082368 78082408 41 CAGGTGGTGGAGAACATGACCAGGGCCCACTTCCCCCTGGT CAGGTGGTGGAGAACATGACCAGAGCCCACTTCCCCCTGGT < 41bp 0.819153952757221 0.604993627475125 0.9080352 0.8271669 prediction 0.428320650564193 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78082388 chr17:78082391 synonymous SNV . 0 24 hm5C_associated_SNPs_86264 0 0 0 0 1 GAA chr17:78082406 5'GT 78082406 Upstream 16bp
chr19 7705825 7705825 1 + G A rs144914451 7705822 + 7705802 7705842 41 GTTCAGTGAGCTAGGCCGCTCTCGTCTGGCAAAGGTGGTGA GTTCAGTGAGCTAGGCCGCTCTCATCTGGCAAAGGTGGTGA < 41bp 0.714160054353327 0.473043541575184 0.36141682 0.169294 prediction 0.428320108706654 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7705822 chr19:7705825 nonsynonymous SNV 0.785 1 24 hm5C_associated_SNPs_86265 0 0 1 1 2 STXBP2 chr19:7705786 3'AG 7705786 Downstream 40bp
chr19 7705825 7705825 1 + G A rs144914451 7705822 + 7705802 7705842 41 GTTCAGTGAGCTAGGCCGCTCTCGTCTGGCAAAGGTGGTGA GTTCAGTGAGCTAGGCCGCTCTCATCTGGCAAAGGTGGTGA < 41bp 0.714160054353327 0.473043541575184 0.36141682 0.169294 prediction 0.428320108706654 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7705822 chr19:7705825 nonsynonymous SNV 0.785 1 24 hm5C_associated_SNPs_86265 0 0 1 1 2 STXBP2 chr19:7705889 5'GT 7705889 Upstream 65bp
chr9 137591908 137591908 1 + C T PAAD 137591906 + 137591886 137591926 41 GTCTTCCTCTACGAGGACCACACGGGGAAGCCTGGCCCGGA GTCTTCCTCTACGAGGACCACATGGGGAAGCCTGGCCCGGA < 41bp 0.714157266484303 0.464256527818953 0.751078 0.78511715 prediction 0.428314532968605 Functional Loss - COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137591906 chr9:137591908 nonsynonymous SNV 0.907 1 23 hm5C_associated_SNPs_86267 1 0 0 0 1 COL5A1 chr9:137591968 5'GT 137591968 Upstream 61bp
chr16 31367283 31367283 1 + G A SKCM 31367280 + 31367260 31367300 41 AGCCTTCCGTGTGGACAGCGCTGGGTTTGGAGACAGCGTGG AGCCTTCCGTGTGGACAGCGCTGAGTTTGGAGACAGCGTGG < 41bp 0.834229699827873 0.620073202105214 0.57539326 0.32217264 prediction 0.428312995445318 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31367280 chr16:31367283 nonsynonymous SNV 0.890 0 24 hm5C_associated_SNPs_86268 0 0 0 0 2 ITGAX chr16:31367214 3'AG 31367214 Downstream 70bp
chr16 31367283 31367283 1 + G A SKCM 31367280 + 31367260 31367300 41 AGCCTTCCGTGTGGACAGCGCTGGGTTTGGAGACAGCGTGG AGCCTTCCGTGTGGACAGCGCTGAGTTTGGAGACAGCGTGG < 41bp 0.834229699827873 0.620073202105214 0.57539326 0.32217264 prediction 0.428312995445318 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31367280 chr16:31367283 nonsynonymous SNV 0.890 0 24 hm5C_associated_SNPs_86268 0 0 0 0 2 ITGAX chr16:31367319 5'GT 31367319 Upstream 37bp
chr9 105765539 105765539 1 + G A LIHC 105765536 + 105765516 105765556 41 CCTTCTCAAATACGGGACAACACGGTTTCTGTAAGCATTGG CCTTCTCAAATACGGGACAACACAGTTTCTGTAAGCATTGG < 41bp 0.739847834126643 0.525693297950674 0.02885577 0.024770796 prediction 0.428309072351938 Functional Loss - CYLC2 ENSG00000155833 CDS Human protein_coding chr9:105765536 chr9:105765539 synonymous SNV . 0 24 hm5C_associated_SNPs_86270 0 0 0 0 1 CYLC2 chr9:105765545 5'GT 105765545 Upstream 7bp
chr10 104629849 104629849 1 + C T COAD 104629846 + 104629826 104629866 41 GGGACGCTGGGTCAGACCTACTACGGGCAGGTGCTGAAGAG GGGACGCTGGGTCAGACCTACTATGGGCAGGTGCTGAAGAG < 41bp 0.715652243378584 0.501497985274415 0.7974194 0.37173963 prediction 0.428308516208338 Functional Loss - AS3MT ENSG00000214435 CDS Human protein_coding chr10:104629846 chr10:104629849 synonymous SNV . 0 24 hm5C_associated_SNPs_86271 0 0 1 0 1 AS3MT chr10:104629841 3'AG 104629841 Downstream 9bp
chr7 150163849 150163849 1 + G A UCEC 150163846 + 150163826 150163866 41 CTCCTCCTGGGAAAATGCCGCTCGGGAAAAAGTGCCACAGG CTCCTCCTGGGAAAATGCCGCTCAGGAAAAAGTGCCACAGG < 41bp 0.801714450122101 0.587561761462778 0.105000466 0.050706446 prediction 0.428305377318646 Functional Loss - GIMAP8 ENSG00000171115 CDS Human protein_coding chr7:150163846 chr7:150163849 synonymous SNV . 0 24 hm5C_associated_SNPs_86273 0 0 0 0 1 GIMAP8 chr7:150163759 3'AG 150163759 Downstream 91bp
chr3 369931 369931 1 + G A rs13318299 369928 + 369908 369948 41 TCGAACAATTCAGGAACATTCAGGATCCCAAACGAGGGGCA TCGAACAATTCAGGAACATTCAGAATCCCAAACGAGGGGCA < 41bp 0.759392754394501 0.545240874769791 0.90376085 0.3965692 prediction 0.428303759249419 Functional Loss - CHL1 ENSG00000134121 CDS Human protein_coding chr3:369928 chr3:369931 synonymous SNV . 0 24 hm5C_associated_SNPs_86276 0 0 0 0 1 CHL1 chr3:369850 3'AG 369850 Downstream 82bp
chr4 187113099 187113099 1 + C T rs574516881 187113097 + 187113077 187113117 41 CTGCAGAGGGTGGCGAGCTACGCGCGGAAATGGCAGCAGAT CTGCAGAGGGTGGCGAGCTACGTGCGGAAATGGCAGCAGAT < 41bp 0.787634082762278 0.573484477111852 0.5738361 0.71127045 prediction 0.428299211300852 Functional Loss - CYP4V2 ENSG00000145476 CDS Human protein_coding chr4:187113097 chr4:187113099 nonsynonymous SNV 0.017 0 23 hm5C_associated_SNPs_86278 0 0 1 0 1 CYP4V2 chr4:187113191 5'GT 187113191 Upstream 93bp
chr11 47600835 47600835 1 + T C STAD 47600834 + 47600814 47600854 41 TGTGCAGGGACTGGGCGACCCTCCGTTCTGTTGCTGCCGGT TGTGCAGGGACTGGGCGACCCCCCGTTCTGTTGCTGCCGGT < 41bp 0.761941923708837 0.547792415104369 0.16943204 0.18240365 prediction 0.428299017208934 Functional Loss - NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600834 chr11:47600835 nonsynonymous SNV 0.638 1 22 hm5C_associated_SNPs_86279 0 0 1 0 2 NDUFS3 chr11:47600821 3'AG 47600821 Downstream 15bp
chr11 47600835 47600835 1 + T C STAD 47600834 + 47600814 47600854 41 TGTGCAGGGACTGGGCGACCCTCCGTTCTGTTGCTGCCGGT TGTGCAGGGACTGGGCGACCCCCCGTTCTGTTGCTGCCGGT < 41bp 0.761941923708837 0.547792415104369 0.16943204 0.18240365 prediction 0.428299017208934 Functional Loss - NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600834 chr11:47600835 nonsynonymous SNV 0.638 1 22 hm5C_associated_SNPs_86279 0 0 1 0 2 NDUFS3 chr11:47600886 5'GT 47600886 Upstream 52bp
chr19 49920433 49920433 1 + T C SKCM 49920432 + 49920412 49920452 41 GCAGACCTGCGCGGCGGGAACTCCAGCAAGCCCTGGTGCCT GCAGACCTGCGCGGCGGGAACCCCAGCAAGCCCTGGTGCCT < 41bp 0.830497547593213 0.616349758882485 0.92903996 0.2427021 prediction 0.428295577421456 Functional Loss - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49920432 chr19:49920433 nonsynonymous SNV 0.370 0 22 hm5C_associated_SNPs_86281 0 0 0 0 2 CCDC155 chr19:49920416 3'AG 49920416 Downstream 18bp
chr19 49920433 49920433 1 + T C SKCM 49920432 + 49920412 49920452 41 GCAGACCTGCGCGGCGGGAACTCCAGCAAGCCCTGGTGCCT GCAGACCTGCGCGGCGGGAACCCCAGCAAGCCCTGGTGCCT < 41bp 0.830497547593213 0.616349758882485 0.92903996 0.2427021 prediction 0.428295577421456 Functional Loss - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49920432 chr19:49920433 nonsynonymous SNV 0.370 0 22 hm5C_associated_SNPs_86281 0 0 0 0 2 CCDC155 chr19:49920523 5'GT 49920523 Upstream 91bp
chr2 219229470 219229470 1 + C T CESC 219229467 + 219229447 219229487 41 TCCTGCCAGTACTACCTGCTCTCCGATGGGTGAGCTGCTGA TCCTGCCAGTACTACCTGCTCTCTGATGGGTGAGCTGCTGA < 41bp 0.714143933376027 0.499371368322962 0.18811342 0.11298606 prediction 0.428287866752054 Functional Loss - CATIP ENSG00000158428 CDS Human protein_coding chr2:219229467 chr2:219229470 synonymous SNV . 0 24 hm5C_associated_SNPs_86286 0 0 0 0 1 CATIP chr2:219229475 5'GT 219229475 Upstream 6bp
chr10 124895887 124895887 1 + G A UCEC 124895884 + 124895864 124895904 41 GCGCAGAGGTTTGCCCTGCCCGCGCACTACCTGGAGCGCTC GCGCAGAGGTTTGCCCTGCCCGCACACTACCTGGAGCGCTC < 41bp 0.788411951482147 0.574268128567299 0.26775512 0.17401874 prediction 0.428287645829696 Functional Loss - HMX3 ENSG00000188620 CDS Human protein_coding chr10:124895884 chr10:124895887 synonymous SNV . 0 24 hm5C_associated_SNPs_86287 0 0 1 0 1 HMX3 chr10:124895966 5'GT 124895966 Upstream 80bp
chr5 135188350 135188350 1 + C T BLCA 135188348 + 135188328 135188368 41 TCAGTAACACGCAGCGGTTCCTCAGCCAGCACCGCTGCGGG TCAGTAACACGCAGCGGTTCCTTAGCCAGCACCGCTGCGGG < 41bp 0.714142754426539 0.434964058662315 0.35322076 0.2614267 prediction 0.428285508853079 Functional Loss - SLC25A48 ENSG00000145832 CDS Human protein_coding chr5:135188348 chr5:135188350 synonymous SNV . 0 23 hm5C_associated_SNPs_86289 0 0 0 0 1 SLC25A48 chr5:135188252 3'AG 135188252 Downstream 99bp
chr3 40223762 40223762 1 + C T SKCM 40223760 + 40223740 40223780 41 AGAAGAAGCCCTGAAGACCCCTCCAGTGGAGGCTCCATCGA AGAAGAAGCCCTGAAGACCCCTTCAGTGGAGGCTCCATCGA < 41bp 0.867007900310511 0.652865304337476 0.9267469 0.08275521 prediction 0.428285191946069 Functional Loss - MYRIP ENSG00000170011 CDS Human protein_coding chr3:40223760 chr3:40223762 nonsynonymous SNV 0.010 0 23 hm5C_associated_SNPs_86290 0 0 0 0 1 MYRIP chr3:40223711 3'AG 40223711 Downstream 52bp
chr2 113953812 113953812 1 + G A SKCM 113953809 + 113953789 113953829 41 AGCCCTTCCTTCAGCTGGCTCAGGATCCCACAGTGCCCACC AGCCCTTCCTTCAGCTGGCTCAGAATCCCACAGTGCCCACC < 41bp 0.828720649319878 0.614578761306832 0.8370801 0.4125451 prediction 0.428283776026092 Functional Loss - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113953809 chr2:113953812 nonsynonymous SNV 0.336 0 24 hm5C_associated_SNPs_86291 0 0 1 0 1 PSD4 chr2:113953724 3'AG 113953724 Downstream 89bp
chr13 78208526 78208526 1 + A T LUSC 78208522 + 78208502 78208542 41 TTTGTTTTGCAGCTCTAACACTGGAGCCAAGCAGGCAGGAC TTTGTTTTGCAGCTCTAACACTGGTGCCAAGCAGGCAGGAC < 41bp 0.891048763323213 0.676911795842393 0.41176277 0.5413031 prediction 0.428273934961639 Functional Loss - SCEL ENSG00000136155 CDS Human protein_coding chr13:78208522 chr13:78208526 synonymous SNV . 0 25 hm5C_associated_SNPs_86293 0 0 0 0 2 SCEL chr13:78208514 3'AG 78208514 Downstream 13bp
chr13 78208526 78208526 1 + A T LUSC 78208522 + 78208502 78208542 41 TTTGTTTTGCAGCTCTAACACTGGAGCCAAGCAGGCAGGAC TTTGTTTTGCAGCTCTAACACTGGTGCCAAGCAGGCAGGAC < 41bp 0.891048763323213 0.676911795842393 0.41176277 0.5413031 prediction 0.428273934961639 Functional Loss - SCEL ENSG00000136155 CDS Human protein_coding chr13:78208522 chr13:78208526 synonymous SNV . 0 25 hm5C_associated_SNPs_86293 0 0 0 0 2 SCEL chr13:78208585 5'GT 78208585 Upstream 60bp
chr7 94040229 94040229 1 + G T LUAD 94040226 + 94040206 94040246 41 TCCTGGTTCTCGTGGTCTTCCTGGAGCTGATGGCAGAGCTG TCCTGGTTCTCGTGGTCTTCCTGTAGCTGATGGCAGAGCTG < 41bp 0.714126279812178 0.325913634122231 0.8730521 0.5618055 prediction 0.428252559624357 Functional Loss - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94040226 chr7:94040229 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_86295 0 0 0 0 1 COL1A2 chr7:94040254 5'GT 94040254 Upstream 26bp
chr13 103525682 103525682 1 + G A UCEC 103525679 + 103525659 103525699 41 TGTTTCCTGTATTAAAGCAACTCGATGCCCAGCAGGTAATC TGTTTCCTGTATTAAAGCAACTCAATGCCCAGCAGGTAATC < 41bp 0.766661641324843 0.552538232253222 0.7664634 0.8273592 prediction 0.428246818143241 Functional Loss - BIVM-ERCC5;ERCC5 ENSG00000134899 CDS Human protein_coding chr13:103525679 chr13:103525682 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_86298 0 0 0 0 1 BIVM-ERCC5;ERCC5 chr13:103525693 5'GT 103525693 Upstream 12bp
chr17 78085843 78085843 1 + C T SKCM 78085840 + 78085820 78085860 41 GCCTCCAGCCACCAGTTTCTCTCCACACACTACAACCTGCA GCCTCCAGCCACCAGTTTCTCTCTACACACTACAACCTGCA < 41bp 0.736832612148276 0.522709686270048 0.96188176 0.6393103 prediction 0.428245851756456 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78085840 chr17:78085843 synonymous SNV . 0 24 hm5C_associated_SNPs_86299 0 0 1 0 2 GAA chr17:78085782 3'AG 78085782 Downstream 62bp
chr17 78085843 78085843 1 + C T SKCM 78085840 + 78085820 78085860 41 GCCTCCAGCCACCAGTTTCTCTCCACACACTACAACCTGCA GCCTCCAGCCACCAGTTTCTCTCTACACACTACAACCTGCA < 41bp 0.736832612148276 0.522709686270048 0.96188176 0.6393103 prediction 0.428245851756456 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78085840 chr17:78085843 synonymous SNV . 0 24 hm5C_associated_SNPs_86299 0 0 1 0 2 GAA chr17:78085899 5'GT 78085899 Upstream 57bp
chr7 48080944 48080944 1 + C T rs17132050 48080942 + 48080922 48080962 41 CCTCTATAGATTGGTATTACCACGTCCCAGTGAAGCGCTCT CCTCTATAGATTGGTATTACCATGTCCCAGTGAAGCGCTCT < 41bp 0.714117783742633 0.450227906189303 0.31584194 0.22060204 prediction 0.428235567485266 Functional Loss - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48080942 chr7:48080944 synonymous SNV . 0 23 hm5C_associated_SNPs_86301 0 0 0 0 1 C7orf57 chr7:48080931 3'AG 48080931 Downstream 14bp
chr1 63999194 63999194 1 + A C rs9436246 63999193 + 63999173 63999213 41 CTAGAAAAACTAGAGGTTGACAGTAAATTGATGCGTCACCA CTAGAAAAACTAGAGGTTGACCGTAAATTGATGCGTCACCA < 41bp 0.714116820501721 0.46534869728658 0.32784486 0.11314303 prediction 0.428233641003443 Functional Loss - EFCAB7 ENSG00000203965 CDS Human protein_coding chr1:63999193 chr1:63999194 nonsynonymous SNV 0.986 1 22 hm5C_associated_SNPs_86302 0 0 1 0 1 EFCAB7 chr1:63999125 3'AG 63999125 Downstream 70bp
chr1 116534666 116534666 1 + G A rs530931299 116534663 + 116534643 116534683 41 CTCTTTCAGCTCTACGTGGCCACGGAGGCCATCCTCATTGC CTCTTTCAGCTCTACGTGGCCACAGAGGCCATCCTCATTGC < 41bp 0.799028646612958 0.584912629454588 0.6010184 0.8329376 prediction 0.42823203431674 Functional Loss - SLC22A15 ENSG00000163393 CDS Human protein_coding chr1:116534663 chr1:116534666 synonymous SNV . 0 24 hm5C_associated_SNPs_86303 0 0 0 0 1 SLC22A15 chr1:116534652 3'AG 116534652 Downstream 15bp
chr12 3387622 3387622 1 + G A HNSC 3387619 + 3387599 3387639 41 GGGCTGCTGGGAGTGGGCATCTGGCTCTCCGTGTCCCAAGG GGGCTGCTGGGAGTGGGCATCTGACTCTCCGTGTCCCAAGG < 41bp 0.714113798410204 0.462358739055473 0.4826735 0.47748753 prediction 0.428227596820409 Functional Loss - TSPAN9 ENSG00000011105 CDS Human protein_coding chr12:3387619 chr12:3387622 stopgain 1.000 1 24 hm5C_associated_SNPs_86305 0 0 1 0 1 TSPAN9 chr12:3387587 3'AG 3387587 Downstream 36bp
chr5 128957956 128957956 1 + C T CESC 128957954 + 128957934 128957974 41 GTCAATTCTGTGATGGTTCCCTCCAAGCTGCCAGGGATGAC GTCAATTCTGTGATGGTTCCCTTCAAGCTGCCAGGGATGAC < 41bp 0.714113470669542 0.395676175529699 0.9403683 0.042464077 prediction 0.428226941339083 Functional Loss - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:128957954 chr5:128957956 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_86306 0 0 0 0 2 ADAMTS19 chr5:128957891 3'AG 128957891 Downstream 66bp
chr5 128957956 128957956 1 + C T CESC 128957954 + 128957934 128957974 41 GTCAATTCTGTGATGGTTCCCTCCAAGCTGCCAGGGATGAC GTCAATTCTGTGATGGTTCCCTTCAAGCTGCCAGGGATGAC < 41bp 0.714113470669542 0.395676175529699 0.9403683 0.042464077 prediction 0.428226941339083 Functional Loss - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:128957954 chr5:128957956 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_86306 0 0 0 0 2 ADAMTS19 chr5:128958041 5'GT 128958041 Upstream 86bp
chr3 142403154 142403154 1 + G A UCEC 142403151 + 142403131 142403171 41 AGGAGCTGATGAAGCTTTCTCCCGAGGAATTACTGCTGCGA AGGAGCTGATGAAGCTTTCTCCCAAGGAATTACTGCTGCGA < 41bp 0.794158238476811 0.580044834713196 0.5187281 0.13471064 prediction 0.428226807527229 Functional Loss - PLS1 ENSG00000120756 CDS Human protein_coding chr3:142403151 chr3:142403154 nonsynonymous SNV 0.942 3 24 hm5C_associated_SNPs_86307 0 0 1 0 2 PLS1 chr3:142403095 3'AG 142403095 Downstream 60bp
chr3 142403154 142403154 1 + G A UCEC 142403151 + 142403131 142403171 41 AGGAGCTGATGAAGCTTTCTCCCGAGGAATTACTGCTGCGA AGGAGCTGATGAAGCTTTCTCCCAAGGAATTACTGCTGCGA < 41bp 0.794158238476811 0.580044834713196 0.5187281 0.13471064 prediction 0.428226807527229 Functional Loss - PLS1 ENSG00000120756 CDS Human protein_coding chr3:142403151 chr3:142403154 nonsynonymous SNV 0.942 3 24 hm5C_associated_SNPs_86307 0 0 1 0 2 PLS1 chr3:142403237 5'GT 142403237 Upstream 84bp
chr19 17424912 17424912 1 + G A STAD 17424909 + 17424889 17424929 41 GCGGACTCCGTGTGCAAAGCCTCGGTGAGTGCGTGTTCCTG GCGGACTCCGTGTGCAAAGCCTCAGTGAGTGCGTGTTCCTG < 41bp 0.714113339567193 0.464994769552502 0.027847737 0.024077803 prediction 0.428226679134385 Functional Loss - DDA1 ENSG00000130311 CDS Human protein_coding chr19:17424909 chr19:17424912 synonymous SNV . 0 24 hm5C_associated_SNPs_86308 0 0 1 0 2 DDA1 chr19:17424832 3'AG 17424832 Downstream 81bp
chr19 17424912 17424912 1 + G A STAD 17424909 + 17424889 17424929 41 GCGGACTCCGTGTGCAAAGCCTCGGTGAGTGCGTGTTCCTG GCGGACTCCGTGTGCAAAGCCTCAGTGAGTGCGTGTTCCTG < 41bp 0.714113339567193 0.464994769552502 0.027847737 0.024077803 prediction 0.428226679134385 Functional Loss - DDA1 ENSG00000130311 CDS Human protein_coding chr19:17424909 chr19:17424912 synonymous SNV . 0 24 hm5C_associated_SNPs_86308 0 0 1 0 2 DDA1 chr19:17424912 5'GT 17424912 Upstream 1bp
chr7 5112641 5112641 1 + G A UCEC 5112638 + 5112618 5112658 41 ATTGATGGGGCTGTGGTGGCCACGCGACCAGAAAGCCGGGG ATTGATGGGGCTGTGGTGGCCACACGACCAGAAAGCCGGGG < 41bp 0.80278398977115 0.588671248866787 0.39071724 0.8930621 prediction 0.428225481808725 Functional Loss - RBAKDN ENSG00000272968 CDS Human protein_coding chr7:5112638 chr7:5112641 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_86309 0 0 0 0 1 RBAKDN chr7:5112553 3'AG 5112553 Downstream 89bp
chr19 14034533 14034533 1 + A C ESCA 14034529 + 14034509 14034549 41 TTTGAAAAGTTGGCGGAGGACTGTAAGCGGAGCATGGACAT TTTGAAAAGTTGGCGGAGGACTGTCAGCGGAGCATGGACAT < 41bp 0.714112605834088 0.288460671340334 0.37783492 0.13674173 prediction 0.428225211668176 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14034529 chr19:14034533 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_86310 0 0 1 0 2 CC2D1A chr19:14034508 3'AG 14034508 Downstream 26bp
chr19 14034533 14034533 1 + A C ESCA 14034529 + 14034509 14034549 41 TTTGAAAAGTTGGCGGAGGACTGTAAGCGGAGCATGGACAT TTTGAAAAGTTGGCGGAGGACTGTCAGCGGAGCATGGACAT < 41bp 0.714112605834088 0.288460671340334 0.37783492 0.13674173 prediction 0.428225211668176 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14034529 chr19:14034533 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_86310 0 0 1 0 2 CC2D1A chr19:14034624 5'GT 14034624 Upstream 92bp
chr11 111835363 111835363 1 + C T LGG 111835360 + 111835340 111835380 41 TGCAGGACCTGCGACAAGATCTCCGGGATGGGGTGATCCTG TGCAGGACCTGCGACAAGATCTCTGGGATGGGGTGATCCTG < 41bp 0.778949281458479 0.564837133708397 0.4475202 0.3053338 prediction 0.428224295500164 Functional Loss - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111835360 chr11:111835363 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_86312 0 0 1 0 2 DIXDC1 chr11:111835273 3'AG 111835273 Downstream 91bp
chr11 111835363 111835363 1 + C T LGG 111835360 + 111835340 111835380 41 TGCAGGACCTGCGACAAGATCTCCGGGATGGGGTGATCCTG TGCAGGACCTGCGACAAGATCTCTGGGATGGGGTGATCCTG < 41bp 0.778949281458479 0.564837133708397 0.4475202 0.3053338 prediction 0.428224295500164 Functional Loss - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111835360 chr11:111835363 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_86312 0 0 1 0 2 DIXDC1 chr11:111835402 5'GT 111835402 Upstream 40bp
chr17 28887643 28887643 1 + C T STAD 28887641 + 28887621 28887661 41 TACTTTCCCCACAGATCTCTCTCGGGCTCACCCCGTGCCTG TACTTTCCCCACAGATCTCTCTTGGGCTCACCCCGTGCCTG < 41bp 0.836063923864156 0.62195439657281 0.11883277 0.15729392 prediction 0.428219054582693 Functional Loss - TBC1D29 ENSG00000266733 CDS Human protein_coding chr17:28887641 chr17:28887643 synonymous SNV . 0 23 hm5C_associated_SNPs_86315 0 0 0 0 2 TBC1D29 chr17:28887635 3'AG 28887635 Downstream 9bp
chr17 28887643 28887643 1 + C T STAD 28887641 + 28887621 28887661 41 TACTTTCCCCACAGATCTCTCTCGGGCTCACCCCGTGCCTG TACTTTCCCCACAGATCTCTCTTGGGCTCACCCCGTGCCTG < 41bp 0.836063923864156 0.62195439657281 0.11883277 0.15729392 prediction 0.428219054582693 Functional Loss - TBC1D29 ENSG00000266733 CDS Human protein_coding chr17:28887641 chr17:28887643 synonymous SNV . 0 23 hm5C_associated_SNPs_86315 0 0 0 0 2 TBC1D29 chr17:28887734 5'GT 28887734 Upstream 92bp
chr1 32625049 32625049 1 + C T COAD 32625046 + 32625026 32625066 41 ATATTGCCTCTGGAACCTCTCAGCAGACCAAAATTGTCATT ATATTGCCTCTGGAACCTCTCAGTAGACCAAAATTGTCATT < 41bp 0.730999437953057 0.516890154001463 0.85438585 0.60972536 prediction 0.428218567903189 Functional Loss - KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32625046 chr1:32625049 stopgain 1.000 1 24 hm5C_associated_SNPs_86316 0 0 1 0 2 KPNA6 chr1:32625001 3'AG 32625001 Downstream 49bp
chr1 32625049 32625049 1 + C T COAD 32625046 + 32625026 32625066 41 ATATTGCCTCTGGAACCTCTCAGCAGACCAAAATTGTCATT ATATTGCCTCTGGAACCTCTCAGTAGACCAAAATTGTCATT < 41bp 0.730999437953057 0.516890154001463 0.85438585 0.60972536 prediction 0.428218567903189 Functional Loss - KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32625046 chr1:32625049 stopgain 1.000 1 24 hm5C_associated_SNPs_86316 0 0 1 0 2 KPNA6 chr1:32625132 5'GT 32625132 Upstream 84bp
chr3 102189292 102189292 1 + C T LUSC 102189289 + 102189269 102189309 41 GGAGGAGGACGACTTGGAGCCCCCAGAGCTCTTCTGGCAGC GGAGGAGGACGACTTGGAGCCCCTAGAGCTCTTCTGGCAGC < 41bp 0.743548692740571 0.529440586801314 0.18118182 0.13179156 prediction 0.428216211878515 Functional Loss - ZPLD1 ENSG00000170044 CDS Human protein_coding chr3:102189289 chr3:102189292 stopgain 0.009 0 24 hm5C_associated_SNPs_86317 0 0 0 0 2 ZPLD1 chr3:102189238 3'AG 102189238 Downstream 55bp
chr3 102189292 102189292 1 + C T LUSC 102189289 + 102189269 102189309 41 GGAGGAGGACGACTTGGAGCCCCCAGAGCTCTTCTGGCAGC GGAGGAGGACGACTTGGAGCCCCTAGAGCTCTTCTGGCAGC < 41bp 0.743548692740571 0.529440586801314 0.18118182 0.13179156 prediction 0.428216211878515 Functional Loss - ZPLD1 ENSG00000170044 CDS Human protein_coding chr3:102189289 chr3:102189292 stopgain 0.009 0 24 hm5C_associated_SNPs_86317 0 0 0 0 2 ZPLD1 chr3:102189346 5'GT 102189346 Upstream 55bp
chr8 11640783 11640783 1 + C T SKCM 11640780 + 11640760 11640800 41 TCAGTTGTCTTGGAGCTCTTCCCCAGTGGTCACACCCACCT TCAGTTGTCTTGGAGCTCTTCCCTAGTGGTCACACCCACCT < 41bp 0.768082321944624 0.553976704322707 0.18093553 0.20628008 prediction 0.428211235243834 Functional Loss - NEIL2 ENSG00000154328 CDS Human protein_coding chr8:11640780 chr8:11640783 nonsynonymous SNV 0.047 1 24 hm5C_associated_SNPs_86318 0 0 1 0 1 NEIL2 chr8:11640712 3'AG 11640712 Downstream 72bp
chr17 61607719 61607719 1 + G A SKCM 61607716 + 61607696 61607736 41 AGAGGGCTCTCATGGCAGGCCAGGCGGACCAGGGCCAGGCA AGAGGGCTCTCATGGCAGGCCAGACGGACCAGGGCCAGGCA < 41bp 0.714102241740676 0.455802623423844 0.91200423 0.66435695 prediction 0.428204483481352 Functional Loss - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61607716 chr17:61607719 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_86322 0 0 0 0 1 KCNH6 chr17:61607698 3'AG 61607698 Downstream 22bp
chr1 44684761 44684761 1 + C T COAD 44684758 + 44684738 44684778 41 AGGAGTACCTGCTACAGGAGCTGCGCAAGATTGAGGCCCGG AGGAGTACCTGCTACAGGAGCTGTGCAAGATTGAGGCCCGG < 41bp 0.747796948001094 0.533697548088991 0.8537915 0.86203253 prediction 0.428198799824205 Functional Loss - DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44684758 chr1:44684761 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_86325 0 0 1 0 1 DMAP1 chr1:44684728 3'AG 44684728 Downstream 34bp
chr6 131520696 131520696 1 + C T SKCM 131520694 + 131520674 131520714 41 CTTCATGAAGTTGTCAAAATCACCGTGGCTCCGTAAGAATG CTTCATGAAGTTGTCAAAATCATCGTGGCTCCGTAAGAATG < 41bp 0.7140992154863 0.42740548015581 0.130476 0.09645054 prediction 0.4281984309726 Functional Loss - AKAP7 ENSG00000118507 CDS Human protein_coding chr6:131520694 chr6:131520696 nonsynonymous SNV 0.007 0 23 hm5C_associated_SNPs_86326 0 0 0 0 2 AKAP7 chr6:131520601 3'AG 131520601 Downstream 96bp
chr6 131520696 131520696 1 + C T SKCM 131520694 + 131520674 131520714 41 CTTCATGAAGTTGTCAAAATCACCGTGGCTCCGTAAGAATG CTTCATGAAGTTGTCAAAATCATCGTGGCTCCGTAAGAATG < 41bp 0.7140992154863 0.42740548015581 0.130476 0.09645054 prediction 0.4281984309726 Functional Loss - AKAP7 ENSG00000118507 CDS Human protein_coding chr6:131520694 chr6:131520696 nonsynonymous SNV 0.007 0 23 hm5C_associated_SNPs_86326 0 0 0 0 2 AKAP7 chr6:131520713 5'GT 131520713 Upstream 18bp
chr17 2936747 2936747 1 + G A rs573090041 2936744 + 2936724 2936764 41 AGCAGTTTGGGAGTGCCGTCCACGACCCTGACAGTCCCAGC AGCAGTTTGGGAGTGCCGTCCACAACCCTGACAGTCCCAGC < 41bp 0.714094257105307 0.474831843962054 0.19804713 0.08901194 prediction 0.428188514210614 Functional Loss - RAP1GAP2 ENSG00000132359 UTR3 Human protein_coding chr17:2936744 chr17:2936747 . . 0 24 hm5C_associated_SNPs_86334 0 0 1 0 1 RAP1GAP2 chr17:2936686 3'AG 2936686 Downstream 62bp
chr12 56482578 56482578 1 + G A MESO 56482575 + 56482555 56482595 41 AGCCGCTTCCAGACTGTGGACTCGAGCAACATTGATGGATT AGCCGCTTCCAGACTGTGGACTCAAGCAACATTGATGGATT < 41bp 0.714091722366046 0.496388222353951 0.44918 0.4201038 prediction 0.428183444732092 Functional Loss - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56482575 chr12:56482578 synonymous SNV . 0 24 hm5C_associated_SNPs_86335 0 0 0 0 2 ERBB3 chr12:56482532 3'AG 56482532 Downstream 47bp
chr12 56482578 56482578 1 + G A MESO 56482575 + 56482555 56482595 41 AGCCGCTTCCAGACTGTGGACTCGAGCAACATTGATGGATT AGCCGCTTCCAGACTGTGGACTCAAGCAACATTGATGGATT < 41bp 0.714091722366046 0.496388222353951 0.44918 0.4201038 prediction 0.428183444732092 Functional Loss - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56482575 chr12:56482578 synonymous SNV . 0 24 hm5C_associated_SNPs_86335 0 0 0 0 2 ERBB3 chr12:56482652 5'GT 56482652 Upstream 75bp
chr12 56482577 56482577 1 + C T UCEC 56482575 + 56482555 56482595 41 AGCCGCTTCCAGACTGTGGACTCGAGCAACATTGATGGATT AGCCGCTTCCAGACTGTGGACTTGAGCAACATTGATGGATT < 41bp 0.714091722366046 0.418859453276843 0.44918 0.30412835 prediction 0.428183444732092 Functional Loss - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56482575 chr12:56482577 nonsynonymous SNV 0.860 1 23 hm5C_associated_SNPs_86336 0 0 0 0 2 ERBB3 chr12:56482532 3'AG 56482532 Downstream 46bp
chr12 56482577 56482577 1 + C T UCEC 56482575 + 56482555 56482595 41 AGCCGCTTCCAGACTGTGGACTCGAGCAACATTGATGGATT AGCCGCTTCCAGACTGTGGACTTGAGCAACATTGATGGATT < 41bp 0.714091722366046 0.418859453276843 0.44918 0.30412835 prediction 0.428183444732092 Functional Loss - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56482575 chr12:56482577 nonsynonymous SNV 0.860 1 23 hm5C_associated_SNPs_86336 0 0 0 0 2 ERBB3 chr12:56482652 5'GT 56482652 Upstream 76bp
chr11 105804627 105804627 1 + G A rs116431428 105804624 + 105804604 105804644 41 GAGCAGCGAAAGCCATGTGACACGATGAAAGTGGGAGGAAA GAGCAGCGAAAGCCATGTGACACAATGAAAGTGGGAGGAAA < 41bp 0.714091395031321 0.496151854779075 0.20685524 0.157451 prediction 0.428182790062641 Functional Loss - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105804624 chr11:105804627 synonymous SNV . 0 24 hm5C_associated_SNPs_86338 0 0 0 2 1 GRIA4 chr11:105804695 5'GT 105804695 Upstream 69bp
chr11 105804626 105804626 1 + C T UCEC 105804624 + 105804604 105804644 41 GAGCAGCGAAAGCCATGTGACACGATGAAAGTGGGAGGAAA GAGCAGCGAAAGCCATGTGACATGATGAAAGTGGGAGGAAA < 41bp 0.714091395031321 0.42435638348035 0.20685524 0.12947947 prediction 0.428182790062641 Functional Loss - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105804624 chr11:105804626 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_86339 0 0 0 2 1 GRIA4 chr11:105804695 5'GT 105804695 Upstream 70bp
chr1 17575679 17575679 1 + G T SARC 17575677 + 17575657 17575697 41 GTGTCCCTGGAGCATCCCACCAGCGCGGTGTGTGTGGCTGG GTGTCCCTGGAGCATCCCACCATCGCGGTGTGTGTGGCTGG < 41bp 0.714089338322853 0.356170231602297 0.29709685 0.15059209 prediction 0.428178676645707 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17575677 chr1:17575679 nonsynonymous SNV 0.992 3 23 hm5C_associated_SNPs_86343 0 0 0 0 1 PADI3 chr1:17575724 5'GT 17575724 Upstream 46bp
chr11 123448136 123448136 1 + C T SKCM 123448134 + 123448114 123448154 41 GCCCATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGA GCCCATCCTCCGGAAGCGGTCTTGCTCGCCAACCCCGCAGA < 41bp 0.714089091902675 0.428200511591006 0.08920911 0.08387092 prediction 0.42817818380535 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123448134 chr11:123448136 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_86344 0 0 0 0 1 GRAMD1B chr11:123448075 3'AG 123448075 Downstream 62bp
chr1 22986043 22986043 1 + A C LUAD 22986042 + 22986022 22986062 41 TCCCAGGCCCAGCTCAGCTGCACCGGGCCCCCAGCCATCCC TCCCAGGCCCAGCTCAGCTGCCCCGGGCCCCCAGCCATCCC < 41bp 0.825328691167643 0.611239698594204 0.27467725 0.30432633 prediction 0.428177985146879 Functional Loss - C1QB ENSG00000173369 CDS Human protein_coding chr1:22986042 chr1:22986043 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_86345 0 0 0 0 1 C1QB chr1:22986136 5'GT 22986136 Upstream 94bp
chr2 228399602 228399602 1 + C T SKCM 228399600 + 228399580 228399620 41 CTTTGGGACCACAGGTAAAGCTCCTGTTGGTTCTGTGGTTT CTTTGGGACCACAGGTAAAGCTTCTGTTGGTTCTGTGGTTT < 41bp 0.714088450902665 0.415684753521655 0.32206106 0.24358103 prediction 0.428176901805331 Functional Loss - AGFG1 ENSG00000173744 CDS Human protein_coding chr2:228399600 chr2:228399602 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_86347 0 0 1 0 1 AGFG1 chr2:228399561 3'AG 228399561 Downstream 42bp
chr2 234894339 234894339 1 + G A GBM 234894336 + 234894316 234894356 41 GTTTCTACATCCTCAGGTACCACGTATGACTTTGCCCACTG GTTTCTACATCCTCAGGTACCACATATGACTTTGCCCACTG < 41bp 0.714086558248461 0.479055963854496 0.11730695 0.08112612 prediction 0.428173116496922 Functional Loss - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234894336 chr2:234894339 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_86351 0 0 0 0 1 TRPM8 chr2:234894332 3'AG 234894332 Downstream 8bp
chr9 139743961 139743961 1 + G A PAAD 139743958 + 139743938 139743978 41 TCTTCAAGTATGTGCTGATCCGAGTCCACTCGGCTCCCCGC TCTTCAAGTATGTGCTGATCCGAATCCACTCGGCTCCCCGC < 41bp 0.801240520527202 0.587155368196922 0.6802173 0.4165836 prediction 0.42817030466056 Functional Loss - PHPT1 ENSG00000054148 CDS Human protein_coding chr9:139743958 chr9:139743961 nonsynonymous SNV 0.807 2 24 hm5C_associated_SNPs_86352 0 0 1 0 1 PHPT1 chr9:139744042 5'GT 139744042 Upstream 82bp
chr2 189856422 189856422 1 + G T LUAD 189856419 + 189856399 189856439 41 CAAGAGGGGCTCCTGGTGAGCGAGGACGGCCAGGACTTCCT CAAGAGGGGCTCCTGGTGAGCGATGACGGCCAGGACTTCCT < 41bp 0.714073238007933 0.314991816794572 0.8804467 0.36433655 prediction 0.428146476015866 Functional Loss - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189856419 chr2:189856422 stopgain 0.997 1 24 hm5C_associated_SNPs_86357 0 0 0 0 1 COL3A1 chr2:189856448 5'GT 189856448 Upstream 27bp
chr1 16355298 16355298 1 + C T LUSC 16355295 + 16355275 16355315 41 CTGGCCACCTTGCTTCTCGCCTCCATCACCTACCCGCCTGG CTGGCCACCTTGCTTCTCGCCTCTATCACCTACCCGCCTGG < 41bp 0.720960687626999 0.506889840528253 0.9650738 0.9461826 prediction 0.428141694197491 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16355295 chr1:16355298 synonymous SNV . 0 24 hm5C_associated_SNPs_86359 0 0 0 0 3 CLCNKA chr1:16355215 3'AG 16355215 Downstream 84bp
chr1 16355298 16355298 1 + C T LUSC 16355295 + 16355275 16355315 41 CTGGCCACCTTGCTTCTCGCCTCCATCACCTACCCGCCTGG CTGGCCACCTTGCTTCTCGCCTCTATCACCTACCCGCCTGG < 41bp 0.720960687626999 0.506889840528253 0.9650738 0.9461826 prediction 0.428141694197491 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16355295 chr1:16355298 synonymous SNV . 0 24 hm5C_associated_SNPs_86359 0 0 0 0 3 CLCNKA chr1:16355256 3'AG 16355256 Downstream 43bp
chr1 16355298 16355298 1 + C T LUSC 16355295 + 16355275 16355315 41 CTGGCCACCTTGCTTCTCGCCTCCATCACCTACCCGCCTGG CTGGCCACCTTGCTTCTCGCCTCTATCACCTACCCGCCTGG < 41bp 0.720960687626999 0.506889840528253 0.9650738 0.9461826 prediction 0.428141694197491 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16355295 chr1:16355298 synonymous SNV . 0 24 hm5C_associated_SNPs_86359 0 0 0 0 3 CLCNKA chr1:16355340 5'GT 16355340 Upstream 43bp
chr19 13192533 13192533 1 + C T SKCM 13192531 + 13192511 13192551 41 GCATCAGCCCTGCACTTCCCCTCCACGTCCATCATCCAGCA GCATCAGCCCTGCACTTCCCCTTCACGTCCATCATCCAGCA < 41bp 0.7140697316601 0.410092321766034 0.81628716 0.029820323 prediction 0.428139463320201 Functional Loss - NFIX ENSG00000008441 CDS Human protein_coding chr19:13192531 chr19:13192533 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_86361 0 0 0 0 1 NFIX chr19:13192494 3'AG 13192494 Downstream 40bp
chr22 50928012 50928012 1 + G A rs41280567 50928009 + 50927989 50928029 41 TCTACCCCTGGCACACGGGCCGCGACTACCAGCAGCTGTGC TCTACCCCTGGCACACGGGCCGCAACTACCAGCAGCTGTGC < 41bp 0.790744073133666 0.576676148307584 0.010446876 0.018137842 prediction 0.428135849652166 Functional Loss - MIOX ENSG00000100253 CDS Human protein_coding chr22:50928009 chr22:50928012 nonsynonymous SNV 0.602 1 24 hm5C_associated_SNPs_86364 0 0 0 0 3 MIOX chr22:50927961 3'AG 50927961 Downstream 52bp
chr22 50928012 50928012 1 + G A rs41280567 50928009 + 50927989 50928029 41 TCTACCCCTGGCACACGGGCCGCGACTACCAGCAGCTGTGC TCTACCCCTGGCACACGGGCCGCAACTACCAGCAGCTGTGC < 41bp 0.790744073133666 0.576676148307584 0.010446876 0.018137842 prediction 0.428135849652166 Functional Loss - MIOX ENSG00000100253 CDS Human protein_coding chr22:50928009 chr22:50928012 nonsynonymous SNV 0.602 1 24 hm5C_associated_SNPs_86364 0 0 0 0 3 MIOX chr22:50928059 5'GT 50928059 Upstream 48bp
chr22 50928012 50928012 1 + G A rs41280567 50928009 + 50927989 50928029 41 TCTACCCCTGGCACACGGGCCGCGACTACCAGCAGCTGTGC TCTACCCCTGGCACACGGGCCGCAACTACCAGCAGCTGTGC < 41bp 0.790744073133666 0.576676148307584 0.010446876 0.018137842 prediction 0.428135849652166 Functional Loss - MIOX ENSG00000100253 CDS Human protein_coding chr22:50928009 chr22:50928012 nonsynonymous SNV 0.602 1 24 hm5C_associated_SNPs_86364 0 0 0 0 3 MIOX chr22:50928073 5'GT 50928073 Upstream 62bp
chr1 203017437 203017437 1 + G A SKCM 203017434 + 203017414 203017454 41 GGAGAAGAACCAGGAGCTGGCACGGGTGAGGGCACCAGGCC GGAGAAGAACCAGGAGCTGGCACAGGTGAGGGCACCAGGCC < 41bp 0.806766966869002 0.592699194976623 0.8190018 0.6346471 prediction 0.428135543784757 Functional Loss - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203017434 chr1:203017437 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_86365 0 0 1 0 2 PPFIA4 chr1:203017355 3'AG 203017355 Downstream 83bp
chr1 203017437 203017437 1 + G A SKCM 203017434 + 203017414 203017454 41 GGAGAAGAACCAGGAGCTGGCACGGGTGAGGGCACCAGGCC GGAGAAGAACCAGGAGCTGGCACAGGTGAGGGCACCAGGCC < 41bp 0.806766966869002 0.592699194976623 0.8190018 0.6346471 prediction 0.428135543784757 Functional Loss - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203017434 chr1:203017437 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_86365 0 0 1 0 2 PPFIA4 chr1:203017438 5'GT 203017438 Upstream 2bp
chr18 61647066 61647066 1 + A C CESC 61647065 + 61647045 61647085 41 TATACAAAGACGGAGATATTCACCGAGGTTTCCAGTCACTT TATACAAAGACGGAGATATTCCCCGAGGTTTCCAGTCACTT < 41bp 0.714066009585861 0.455234383285885 0.19099334 0.106948495 prediction 0.428132019171723 Functional Loss - SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61647065 chr18:61647066 nonsynonymous SNV 0.066 5 22 hm5C_associated_SNPs_86366 0 0 0 0 1 SERPINB8 chr18:61647035 3'AG 61647035 Downstream 32bp
chr9 108127880 108127880 1 + G A COAD 108127877 + 108127857 108127897 41 TATCACATTAGTCAAAATTCCGCGAATGATCCTTATGTATA TATCACATTAGTCAAAATTCCGCAAATGATCCTTATGTATA < 41bp 0.760097855460094 0.546035361494476 0.12611449 0.074909 prediction 0.428124987931237 Functional Loss - SLC44A1 ENSG00000070214 CDS Human protein_coding chr9:108127877 chr9:108127880 nonsynonymous SNV 0.974 3 24 hm5C_associated_SNPs_86369 0 0 0 0 1 SLC44A1 chr9:108127920 5'GT 108127920 Upstream 41bp
chr2 228131751 228131751 1 + G T KIRP 228131748 + 228131728 228131768 41 TACACAGTGCCCTTATATCCCAGGGCCTCCCGGTCTCCCAG TACACAGTGCCCTTATATCCCAGTGCCTCCCGGTCTCCCAG < 41bp 0.714062199996247 0.312200575438631 0.9276566 0.37658656 prediction 0.428124399992494 Functional Loss - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228131748 chr2:228131751 nonsynonymous SNV 0.158 5 24 hm5C_associated_SNPs_86370 0 0 0 0 2 COL4A3 chr2:228131709 3'AG 228131709 Downstream 43bp
chr2 228131751 228131751 1 + G T KIRP 228131748 + 228131728 228131768 41 TACACAGTGCCCTTATATCCCAGGGCCTCCCGGTCTCCCAG TACACAGTGCCCTTATATCCCAGTGCCTCCCGGTCTCCCAG < 41bp 0.714062199996247 0.312200575438631 0.9276566 0.37658656 prediction 0.428124399992494 Functional Loss - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228131748 chr2:228131751 nonsynonymous SNV 0.158 5 24 hm5C_associated_SNPs_86370 0 0 0 0 2 COL4A3 chr2:228131804 5'GT 228131804 Upstream 54bp
chr19 50385511 50385511 1 + G A SKCM 50385508 + 50385488 50385528 41 CTCGTCCCCAGCGCTTCCTCCAGGATCCCTACTCCACCACC CTCGTCCCCAGCGCTTCCTCCAGAATCCCTACTCCACCACC < 41bp 0.821431700037073 0.607374098924615 0.8327564 0.5915111 prediction 0.428115202224916 Functional Loss - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385508 chr19:50385511 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_86372 0 0 1 0 1 TBC1D17 chr19:50385499 3'AG 50385499 Downstream 13bp
chr2 120362840 120362840 1 + G T CESC 120362837 + 120362817 120362857 41 AGAAAGTCAGACAGGACATTCACGAAGAGATGGAAAATCAT AGAAAGTCAGACAGGACATTCACTAAGAGATGGAAAATCAT < 41bp 0.714055686352292 0.332663705195428 0.06890571 0.030267328 prediction 0.428111372704583 Functional Loss - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120362837 chr2:120362840 stopgain 0.106 0 24 hm5C_associated_SNPs_86374 0 0 0 0 2 CFAP221 chr2:120362757 3'AG 120362757 Downstream 84bp
chr2 120362840 120362840 1 + G T CESC 120362837 + 120362817 120362857 41 AGAAAGTCAGACAGGACATTCACGAAGAGATGGAAAATCAT AGAAAGTCAGACAGGACATTCACTAAGAGATGGAAAATCAT < 41bp 0.714055686352292 0.332663705195428 0.06890571 0.030267328 prediction 0.428111372704583 Functional Loss - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120362837 chr2:120362840 stopgain 0.106 0 24 hm5C_associated_SNPs_86374 0 0 0 0 2 CFAP221 chr2:120362865 5'GT 120362865 Upstream 26bp
chr1 155288068 155288068 1 - G A STAD 155288070 - 155288050 155288090 41 CAATACACCTGCAGGAAGAGCTCGATCAGGTTCAGGTAATA CAATACACCTGCAGGAAGAGCTTGATCAGGTTCAGGTAATA < 41bp 0.714043004639895 0.445369613503417 0.2086393 0.21210313 prediction 0.42808600927979 Functional Loss - FDPS ENSG00000160752 CDS Human protein_coding chr1:155288070 chr1:155288068 nonsynonymous SNV 0.967 1 23 hm5C_associated_SNPs_86380 0 0 0 0 1 FDPS chr1:155288056 5'GT 155288056 Upstream 13bp
chr5 145428710 145428710 1 + G A ESCA 145428707 + 145428687 145428727 41 CTGCAAAAGGGAGAAGGCGTCAGGGTCCTGGGGAAGTGCCA CTGCAAAAGGGAGAAGGCGTCAGAGTCCTGGGGAAGTGCCA < 41bp 0.770441958185437 0.556401536263949 0.90629935 0.8855062 prediction 0.428080843842976 Functional Loss - SH3RF2 ENSG00000156463 CDS Human protein_coding chr5:145428707 chr5:145428710 synonymous SNV . 0 24 hm5C_associated_SNPs_86382 0 0 0 0 2 SH3RF2 chr5:145428638 3'AG 145428638 Downstream 73bp
chr5 145428710 145428710 1 + G A ESCA 145428707 + 145428687 145428727 41 CTGCAAAAGGGAGAAGGCGTCAGGGTCCTGGGGAAGTGCCA CTGCAAAAGGGAGAAGGCGTCAGAGTCCTGGGGAAGTGCCA < 41bp 0.770441958185437 0.556401536263949 0.90629935 0.8855062 prediction 0.428080843842976 Functional Loss - SH3RF2 ENSG00000156463 CDS Human protein_coding chr5:145428707 chr5:145428710 synonymous SNV . 0 24 hm5C_associated_SNPs_86382 0 0 0 0 2 SH3RF2 chr5:145428808 5'GT 145428808 Upstream 99bp
chrX 100088198 100088198 1 + C T COAD 100088196 + 100088176 100088216 41 GGATCCCCGAGGAATAGATGCACGAGGGATGGAGGCCCGAG GGATCCCCGAGGAATAGATGCATGAGGGATGGAGGCCCGAG < 41bp 0.855201262428231 0.641165898681293 0.5182465 0.76741445 prediction 0.428070727493876 Functional Loss - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100088196 chrX:100088198 stopgain 0.997 0 23 hm5C_associated_SNPs_86383 0 0 0 0 1 CSTF2 chrX:100088169 3'AG 100088169 Downstream 30bp
chr5 42801366 42801366 1 - G A SKCM 42801369 - 42801349 42801389 41 TGTGGATAAAACAGTTGAAACTCCATCGCCTCATTACCATC TGTGGATAAAACAGTTGAAACTCTATCGCCTCATTACCATC < 41bp 0.731515775068178 0.517483308276569 0.9695938 0.9493511 prediction 0.428064933583217 Functional Loss - SELENOP ENSG00000250722 CDS Human protein_coding chr5:42801369 chr5:42801366 unknown 0.001 0 24 hm5C_associated_SNPs_86386 0 0 1 0 1 SELENOP chr5:42801433 3'AG 42801433 Downstream 68bp
chr16 28906274 28906274 1 + G A STAD 28906271 + 28906251 28906291 41 GAGAGAGCCAACGCCTGCAACTCGGTGAGCCTGCGGAGCCC GAGAGAGCCAACGCCTGCAACTCAGTGAGCCTGCGGAGCCC < 41bp 0.821848315854414 0.607816450291466 0.5011282 0.20192969 prediction 0.428063731125895 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28906271 chr16:28906274 synonymous SNV . 0 24 hm5C_associated_SNPs_86387 0 0 1 0 1 ATP2A1 chr16:28906274 5'GT 28906274 Upstream 1bp
chr7 132959852 132959852 1 + G T UCEC 132959850 + 132959830 132959870 41 ATTGATTGTACAGCACTACACAGAATTGACGACAGCCATTC ATTGATTGTACAGCACTACACATAATTGACGACAGCCATTC < 41bp 0.714029145152466 0.456949414467999 0.112603635 0.10115981 prediction 0.428058290304932 Functional Loss - EXOC4 ENSG00000131558 CDS Human protein_coding chr7:132959850 chr7:132959852 stopgain 0.996 1 23 hm5C_associated_SNPs_86389 0 0 1 0 1 EXOC4 chr7:132959926 5'GT 132959926 Upstream 75bp
chrX 102611483 102611483 1 + G A rs748477071 102611480 + 102611460 102611500 41 ACCAGCTTCCTTCAGCAGCGCAGGCGGTGGTCCCTGAGGCC ACCAGCTTCCTTCAGCAGCGCAGACGGTGGTCCCTGAGGCC < 41bp 0.714027971151078 0.469096584883146 0.5774219 0.3089857 prediction 0.428055942302156 Functional Loss - TCEAL9 ENSG00000185222 UTR5 Human protein_coding chrX:102611480 chrX:102611483 . . 0 24 hm5C_associated_SNPs_86390 0 0 1 0 1 TCEAL9 chrX:102611534 5'GT 102611534 Upstream 52bp
chr1 209782409 209782409 1 + T C COAD 209782408 + 209782388 209782428 41 GGGCTACTATGAGTTTGAGTCTCCATTCTGGGATGACATTT GGGCTACTATGAGTTTGAGTCCCCATTCTGGGATGACATTT < 41bp 0.714027280376494 0.43403786082404 0.95932937 0.33031482 prediction 0.428054560752988 Functional Loss - CAMK1G ENSG00000008118 CDS Human protein_coding chr1:209782408 chr1:209782409 nonsynonymous SNV 0.993 1 22 hm5C_associated_SNPs_86391 0 0 0 0 2 CAMK1G chr1:209782325 3'AG 209782325 Downstream 85bp
chr1 209782409 209782409 1 + T C COAD 209782408 + 209782388 209782428 41 GGGCTACTATGAGTTTGAGTCTCCATTCTGGGATGACATTT GGGCTACTATGAGTTTGAGTCCCCATTCTGGGATGACATTT < 41bp 0.714027280376494 0.43403786082404 0.95932937 0.33031482 prediction 0.428054560752988 Functional Loss - CAMK1G ENSG00000008118 CDS Human protein_coding chr1:209782408 chr1:209782409 nonsynonymous SNV 0.993 1 22 hm5C_associated_SNPs_86391 0 0 0 0 2 CAMK1G chr1:209782437 5'GT 209782437 Upstream 29bp
chr12 109834304 109834304 1 + G A CESC 109834301 + 109834281 109834321 41 CAGAGGCCTCCAAGAAAATTCTCGAGTATTTTGCAGTGACC CAGAGGCCTCCAAGAAAATTCTCAAGTATTTTGCAGTGACC < 41bp 0.777428140862493 0.563401200102638 0.8323163 0.40599358 prediction 0.428053881519709 Functional Loss - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109834301 chr12:109834304 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_86392 0 0 0 0 1 MYO1H chr12:109834387 5'GT 109834387 Upstream 84bp
chr15 48056062 48056062 1 + G T LUAD 48056059 + 48056039 48056079 41 TTGGGCAGGCTGTGTATTCCCGCGTGGCCCGCATATGTAAA TTGGGCAGGCTGTGTATTCCCGCTTGGCCCGCATATGTAAA < 41bp 0.714026674738332 0.343423494568311 0.30890223 0.029141545 prediction 0.428053349476663 Functional Loss - SEMA6D ENSG00000137872 CDS Human protein_coding chr15:48056059 chr15:48056062 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_86393 0 0 0 0 1 SEMA6D chr15:48056047 3'AG 48056047 Downstream 16bp
chr15 48056061 48056061 1 + C T PAAD 48056059 + 48056039 48056079 41 TTGGGCAGGCTGTGTATTCCCGCGTGGCCCGCATATGTAAA TTGGGCAGGCTGTGTATTCCCGTGTGGCCCGCATATGTAAA < 41bp 0.714026674738332 0.433517647291991 0.30890223 0.13781014 prediction 0.428053349476663 Functional Loss - SEMA6D ENSG00000137872 CDS Human protein_coding chr15:48056059 chr15:48056061 synonymous SNV . 0 23 hm5C_associated_SNPs_86394 0 0 0 0 1 SEMA6D chr15:48056047 3'AG 48056047 Downstream 15bp
chr5 7895863 7895863 1 + G A UCEC 7895860 + 7895840 7895880 41 ATTTCAGATATCCATCTCTCCTCGAACAACAAATTCTTTCC ATTTCAGATATCCATCTCTCCTCAAACAACAAATTCTTTCC < 41bp 0.742158547351853 0.528134200430697 0.87673163 0.13856661 prediction 0.42804869384231 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7895860 chr5:7895863 nonsynonymous SNV 0.340 3 24 hm5C_associated_SNPs_86396 0 0 1 2 1 MTRR chr5:7895847 3'AG 7895847 Downstream 17bp
chr5 6633926 6633926 1 + C T BLCA 6633924 + 6633904 6633944 41 CCAGCGAGTCCGCCCCGCGTCTCCGCAGCGCGCCCAACTGC CCAGCGAGTCCGCCCCGCGTCTTCGCAGCGCGCCCAACTGC < 41bp 0.79350730586478 0.579484070828339 0.12909538 0.095397174 prediction 0.428046470072883 Functional Loss - SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6633924 chr5:6633926 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_86397 0 0 1 0 1 SRD5A1 chr5:6633982 5'GT 6633982 Upstream 57bp
chr17 18054156 18054156 1 + G A SARC 18054153 + 18054133 18054173 41 CTGCCACCTCTCCCCAGGCCCGGGAGATGACCCTGCAGGCC CTGCCACCTCTCCCCAGGCCCGGAAGATGACCCTGCAGGCC < 41bp 0.72063885461029 0.506616031895554 0.93964267 0.86774814 prediction 0.428045645429472 Functional Loss - MYO15A ENSG00000091536 CDS Human protein_coding chr17:18054153 chr17:18054156 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_86398 0 0 0 0 2 MYO15A chr17:18054150 3'AG 18054150 Downstream 7bp
chr17 18054156 18054156 1 + G A SARC 18054153 + 18054133 18054173 41 CTGCCACCTCTCCCCAGGCCCGGGAGATGACCCTGCAGGCC CTGCCACCTCTCCCCAGGCCCGGAAGATGACCCTGCAGGCC < 41bp 0.72063885461029 0.506616031895554 0.93964267 0.86774814 prediction 0.428045645429472 Functional Loss - MYO15A ENSG00000091536 CDS Human protein_coding chr17:18054153 chr17:18054156 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_86398 0 0 0 0 2 MYO15A chr17:18054227 5'GT 18054227 Upstream 72bp
chr1 154517359 154517359 1 + C T UCEC 154517356 + 154517336 154517376 41 CCACCATCCCTGTGCAGTCTCTGCGCAGCCTAGACAGCGAC CCACCATCCCTGTGCAGTCTCTGTGCAGCCTAGACAGCGAC < 41bp 0.737632570799623 0.523610842382378 0.068675965 0.07187167 prediction 0.428043456834491 Functional Loss - TDRD10 ENSG00000163239 CDS Human protein_coding chr1:154517356 chr1:154517359 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_86399 0 0 0 0 2 TDRD10 chr1:154517271 3'AG 154517271 Downstream 89bp
chr1 154517359 154517359 1 + C T UCEC 154517356 + 154517336 154517376 41 CCACCATCCCTGTGCAGTCTCTGCGCAGCCTAGACAGCGAC CCACCATCCCTGTGCAGTCTCTGTGCAGCCTAGACAGCGAC < 41bp 0.737632570799623 0.523610842382378 0.068675965 0.07187167 prediction 0.428043456834491 Functional Loss - TDRD10 ENSG00000163239 CDS Human protein_coding chr1:154517356 chr1:154517359 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_86399 0 0 0 0 2 TDRD10 chr1:154517425 5'GT 154517425 Upstream 67bp
chr6 74072991 74072991 1 + G A SKCM 74072988 + 74072968 74073008 41 CTGACTATCACCGCCAGCTCCAGGCGAAAGGTACGGGGCTG CTGACTATCACCGCCAGCTCCAGACGAAAGGTACGGGGCTG < 41bp 0.806669574220237 0.592648409299106 0.82753474 0.38116524 prediction 0.428042329842261 Functional Loss - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74072988 chr6:74072991 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_86400 0 0 0 0 1 KHDC3L chr6:74072997 5'GT 74072997 Upstream 7bp
chr11 61249817 61249817 1 + C T GBM 61249815 + 61249795 61249835 41 TCAAGCCCCGTGTGGGCAGTCACGTAGGCACCGGCTACAAA TCAAGCCCCGTGTGGGCAGTCATGTAGGCACCGGCTACAAA < 41bp 0.714019372008222 0.441058111674573 0.47514254 0.36974877 prediction 0.428038744016445 Functional Loss - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61249815 chr11:61249817 synonymous SNV . 0 23 hm5C_associated_SNPs_86401 0 0 0 0 2 PPP1R32 chr11:61249783 3'AG 61249783 Downstream 35bp
chr11 61249817 61249817 1 + C T GBM 61249815 + 61249795 61249835 41 TCAAGCCCCGTGTGGGCAGTCACGTAGGCACCGGCTACAAA TCAAGCCCCGTGTGGGCAGTCATGTAGGCACCGGCTACAAA < 41bp 0.714019372008222 0.441058111674573 0.47514254 0.36974877 prediction 0.428038744016445 Functional Loss - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61249815 chr11:61249817 synonymous SNV . 0 23 hm5C_associated_SNPs_86401 0 0 0 0 2 PPP1R32 chr11:61249900 5'GT 61249900 Upstream 84bp
chr11 61249818 61249818 1 + G A LUAD 61249815 + 61249795 61249835 41 TCAAGCCCCGTGTGGGCAGTCACGTAGGCACCGGCTACAAA TCAAGCCCCGTGTGGGCAGTCACATAGGCACCGGCTACAAA < 41bp 0.714019372008222 0.466192467676783 0.47514254 0.25637496 prediction 0.428038744016445 Functional Loss - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61249815 chr11:61249818 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_86402 0 0 0 0 2 PPP1R32 chr11:61249783 3'AG 61249783 Downstream 36bp
chr11 61249818 61249818 1 + G A LUAD 61249815 + 61249795 61249835 41 TCAAGCCCCGTGTGGGCAGTCACGTAGGCACCGGCTACAAA TCAAGCCCCGTGTGGGCAGTCACATAGGCACCGGCTACAAA < 41bp 0.714019372008222 0.466192467676783 0.47514254 0.25637496 prediction 0.428038744016445 Functional Loss - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61249815 chr11:61249818 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_86402 0 0 0 0 2 PPP1R32 chr11:61249900 5'GT 61249900 Upstream 83bp
chr7 120386040 120386040 1 + G A SKCM 120386037 + 120386017 120386057 41 GGTAGTATACAAGAACTCAGCACGATTCAGATCAGATGTGT GGTAGTATACAAGAACTCAGCACAATTCAGATCAGATGTGT < 41bp 0.733502838828269 0.519486867754798 0.055487394 0.04907626 prediction 0.428031942146941 Functional Loss - KCND2 ENSG00000184408 CDS Human protein_coding chr7:120386037 chr7:120386040 synonymous SNV . 0 24 hm5C_associated_SNPs_86405 0 0 0 0 1 KCND2 chr7:120386081 5'GT 120386081 Upstream 42bp
chr20 46267908 46267908 1 + G A UCEC 46267905 + 46267885 46267925 41 ACCCATGTTGGGTGGGAATCCAAGAATGATGGATAGTCAGG ACCCATGTTGGGTGGGAATCCAAAAATGATGGATAGTCAGG < 41bp 0.714006822475679 0.48219735717226 0.3333061 0.14586326 prediction 0.428013644951357 Functional Loss - NCOA3 ENSG00000124151 CDS Human protein_coding chr20:46267905 chr20:46267908 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_86407 0 0 0 0 1 NCOA3 chr20:46267946 5'GT 46267946 Upstream 39bp
chr19 45567345 45567345 1 + G A UCEC 45567342 + 45567322 45567362 41 CCGGGCCGCGAGGAGAAGATCACGTTCATCACCAGTTTTGG CCGGGCCGCGAGGAGAAGATCACATTCATCACCAGTTTTGG < 41bp 0.714005405933631 0.46723932305015 0.8087517 0.4794919 prediction 0.428010811867261 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45567342 chr19:45567345 synonymous SNV . 0 24 hm5C_associated_SNPs_86408 0 0 1 1 1 CLASRP chr19:45567270 3'AG 45567270 Downstream 76bp
chr19 45567344 45567344 1 + C T UCEC 45567342 + 45567322 45567362 41 CCGGGCCGCGAGGAGAAGATCACGTTCATCACCAGTTTTGG CCGGGCCGCGAGGAGAAGATCATGTTCATCACCAGTTTTGG < 41bp 0.714005405933631 0.461297640193036 0.8087517 0.71826786 prediction 0.428010811867261 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45567342 chr19:45567344 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_86409 0 0 1 1 1 CLASRP chr19:45567270 3'AG 45567270 Downstream 75bp
chr6 50682922 50682922 1 + C T STAD 50682920 + 50682900 50682940 41 TGTCGCCTATTCCTCCTCCTCTCCTTTAACTTACTCCACCA TGTCGCCTATTCCTCCTCCTCTTCTTTAACTTACTCCACCA < 41bp 0.713998820758652 0.420703410374315 0.41357115 0.0988107 prediction 0.427997641517304 Functional Loss - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50682920 chr6:50682922 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_86411 0 0 0 0 1 TFAP2D chr6:50682829 3'AG 50682829 Downstream 94bp
chr5 131607054 131607054 1 + G C BLCA 131607053 + 131607033 131607073 41 TGCAGAGTCGACCTGGGCTCCGAGGTGTACAGGATGCTGCG TGCAGAGTCGACCTGGGCTCCCAGGTGTACAGGATGCTGCG < 41bp 0.888287864052337 0.67428920045689 0.9095 0.9114162 prediction 0.427997327190892 Functional Loss - PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131607053 chr5:131607054 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_86412 0 0 1 0 1 PDLIM4 chr5:131606996 3'AG 131606996 Downstream 59bp
chr19 3735606 3735606 1 + A T LGG 3735602 + 3735582 3735622 41 GCGGGAAAGTTCAGTAGATTCCAGAACCATCTCGGAACCAG GCGGGAAAGTTCAGTAGATTCCAGTACCATCTCGGAACCAG < 41bp 0.713995300162734 0.38797755343077 0.52715325 0.19391584 prediction 0.427990600325469 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3735602 chr19:3735606 nonsynonymous SNV 0.031 0 25 hm5C_associated_SNPs_86413 0 0 0 0 2 TJP3 chr19:3735564 3'AG 3735564 Downstream 43bp
chr19 3735606 3735606 1 + A T LGG 3735602 + 3735582 3735622 41 GCGGGAAAGTTCAGTAGATTCCAGAACCATCTCGGAACCAG GCGGGAAAGTTCAGTAGATTCCAGTACCATCTCGGAACCAG < 41bp 0.713995300162734 0.38797755343077 0.52715325 0.19391584 prediction 0.427990600325469 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3735602 chr19:3735606 nonsynonymous SNV 0.031 0 25 hm5C_associated_SNPs_86413 0 0 0 0 2 TJP3 chr19:3735637 5'GT 3735637 Upstream 32bp
chr19 8539106 8539106 1 + G C TGCT 8539102 + 8539082 8539122 41 AAACATGGGTCGATTTGGATCTGGGATGAACATGGGCAGGA AAACATGGGTCGATTTGGATCTGGCATGAACATGGGCAGGA < 41bp 0.867851701729445 0.653859033810569 0.72144365 0.11123246 prediction 0.427985335837753 Functional Loss - HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8539102 chr19:8539106 synonymous SNV . 0 25 hm5C_associated_SNPs_86414 0 0 1 0 1 HNRNPM chr19:8539051 3'AG 8539051 Downstream 56bp
chr1 55518056 55518056 1 + A C SKCM 55518052 + 55518032 55518072 41 TCACCGACTTCGAGAATGTGCCCGAGGAGGACGGGACCCGC TCACCGACTTCGAGAATGTGCCCGCGGAGGACGGGACCCGC < 41bp 0.713992029809933 0.290232822484044 0.13740626 0.096101165 prediction 0.427984059619865 Functional Loss - PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55518052 chr1:55518056 nonsynonymous SNV 0.712 2 25 hm5C_associated_SNPs_86415 0 0 1 0 1 PCSK9 chr1:55518084 5'GT 55518084 Upstream 29bp
chr1 55518054 55518054 1 + C T UCEC 55518052 + 55518032 55518072 41 TCACCGACTTCGAGAATGTGCCCGAGGAGGACGGGACCCGC TCACCGACTTCGAGAATGTGCCTGAGGAGGACGGGACCCGC < 41bp 0.713992029809933 0.429125251208421 0.13740626 0.10831985 prediction 0.427984059619865 Functional Loss - PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55518052 chr1:55518054 synonymous SNV . 0 23 hm5C_associated_SNPs_86416 2 0 1 0 1 PCSK9 chr1:55518084 5'GT 55518084 Upstream 31bp
chr1 176811564 176811564 1 + G A SKCM 176811561 + 176811541 176811581 41 ACCTGGATGAGTGCACCTGCCGGGACCCCAAGGCAGAAGAA ACCTGGATGAGTGCACCTGCCGGAACCCCAAGGCAGAAGAA < 41bp 0.713990434416507 0.486944207844309 0.8688987 0.5328698 prediction 0.427980868833015 Functional Loss - PAPPA2 ENSG00000116183 CDS Human protein_coding chr1:176811561 chr1:176811564 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_86419 0 0 0 0 1 PAPPA2 chr1:176811516 3'AG 176811516 Downstream 49bp
chr20 32232209 32232209 1 + G A STAD 32232206 + 32232186 32232226 41 ACATGCAGTGGCTGCAATATCGCGCGATACTGTGGCTCTTT ACATGCAGTGGCTGCAATATCGCACGATACTGTGGCTCTTT < 41bp 0.771732290768116 0.557746403832947 0.91883504 0.5984335 prediction 0.427971773870337 Functional Loss - CBFA2T2 ENSG00000078699 CDS Human protein_coding chr20:32232206 chr20:32232209 synonymous SNV . 0 24 hm5C_associated_SNPs_86422 0 0 0 0 1 CBFA2T2 chr20:32232153 3'AG 32232153 Downstream 57bp
chr15 23609538 23609538 1 + G A rs149847867 23609535 + 23609515 23609555 41 AGAAGGCAGACCTGAGTGAGCTGGTGAAGAAACAAGAACTT AGAAGGCAGACCTGAGTGAGCTGATGAAGAAACAAGAACTT < 41bp 0.769770983682392 0.555785719799975 0.33914357 0.37129748 prediction 0.427970527764834 Functional Loss - GOLGA8S ENSG00000261739 CDS Human protein_coding chr15:23609535 chr15:23609538 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_86423 0 0 0 0 2 GOLGA8S chr15:23609490 3'AG 23609490 Downstream 49bp
chr15 23609538 23609538 1 + G A rs149847867 23609535 + 23609515 23609555 41 AGAAGGCAGACCTGAGTGAGCTGGTGAAGAAACAAGAACTT AGAAGGCAGACCTGAGTGAGCTGATGAAGAAACAAGAACTT < 41bp 0.769770983682392 0.555785719799975 0.33914357 0.37129748 prediction 0.427970527764834 Functional Loss - GOLGA8S ENSG00000261739 CDS Human protein_coding chr15:23609535 chr15:23609538 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_86423 0 0 0 0 2 GOLGA8S chr15:23609590 5'GT 23609590 Upstream 53bp
chr1 35885164 35885164 1 + G A COAD 35885161 + 35885141 35885181 41 CCCATGTGGTACTCCACATTCCCGATAGACCCTGGAACCCT CCCATGTGGTACTCCACATTCCCAATAGACCCTGGAACCCT < 41bp 0.733341606143281 0.519362397734759 0.08582544 0.057950705 prediction 0.427958416817045 Functional Loss - ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35885161 chr1:35885164 synonymous SNV . 0 24 hm5C_associated_SNPs_86425 0 0 1 0 1 ZMYM4 chr1:35885071 3'AG 35885071 Downstream 94bp
chr15 27182467 27182467 1 + C T LUSC 27182465 + 27182445 27182485 41 GTGGGCACTGAGAACATCAGCACCAGCACAGGTGAGGGCTC GTGGGCACTGAGAACATCAGCATCAGCACAGGTGAGGGCTC < 41bp 0.862709323304564 0.648733432864793 0.36823818 0.2560764 prediction 0.427951780879541 Functional Loss - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27182465 chr15:27182467 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_86428 0 0 0 0 1 GABRA5 chr15:27182475 5'GT 27182475 Upstream 9bp
chr5 75490760 75490760 1 + C T HNSC 75490758 + 75490738 75490778 41 TTGCAGGCAGCATAGTGTACCTCGGGATGATGGTGGGGGCG TTGCAGGCAGCATAGTGTACCTTGGGATGATGGTGGGGGCG < 41bp 0.713973829365861 0.429070251029462 0.1237711 0.06354383 prediction 0.427947658731721 Functional Loss - SV2C ENSG00000122012 CDS Human protein_coding chr5:75490758 chr5:75490760 synonymous SNV . 0 23 hm5C_associated_SNPs_86429 0 0 0 0 1 SV2C chr5:75490744 3'AG 75490744 Downstream 17bp
chr4 39471655 39471655 1 + C T STAD 39471653 + 39471633 39471673 41 TTCCAGTAAGGTTCGTGATCCTCGGGCCAATTTTGATCAGT TTCCAGTAAGGTTCGTGATCCTTGGGCCAATTTTGATCAGT < 41bp 0.713972582840331 0.419582303011733 0.39251515 0.13777906 prediction 0.427945165680662 Functional Loss - LIAS ENSG00000121897 CDS Human protein_coding chr4:39471653 chr4:39471655 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_86431 0 0 1 0 1 LIAS chr4:39471639 3'AG 39471639 Downstream 17bp
chr20 333866 333866 1 + T C UCEC 333865 + 333845 333885 41 TCTCCCTAGATCAGCCTGTCCTCGGGGACCCTGCTTCTGCT TCTCCCTAGATCAGCCTGTCCCCGGGGACCCTGCTTCTGCT < 41bp 0.805630694623944 0.591659409176886 0.15561107 0.89109635 prediction 0.427942570894115 Functional Loss - NRSN2 ENSG00000125841 CDS Human protein_coding chr20:333865 chr20:333866 nonsynonymous SNV 0.014 0 22 hm5C_associated_SNPs_86432 0 0 1 0 1 NRSN2 chr20:333854 3'AG 333854 Downstream 13bp
chr12 49690256 49690256 1 + C T COAD 49690254 + 49690234 49690274 41 TGTCCCGCCTGGAACTAGAGCGCAAGATTGAGTCTCTGATG TGTCCCGCCTGGAACTAGAGCGTAAGATTGAGTCTCTGATG < 41bp 0.713968931942647 0.438425609629307 0.3617985 0.2843628 prediction 0.427937863885294 Functional Loss - PRPH ENSG00000135406 CDS Human protein_coding chr12:49690254 chr12:49690256 synonymous SNV . 0 23 hm5C_associated_SNPs_86435 0 0 0 0 2 PRPH chr12:49690215 3'AG 49690215 Downstream 42bp
chr12 49690256 49690256 1 + C T COAD 49690254 + 49690234 49690274 41 TGTCCCGCCTGGAACTAGAGCGCAAGATTGAGTCTCTGATG TGTCCCGCCTGGAACTAGAGCGTAAGATTGAGTCTCTGATG < 41bp 0.713968931942647 0.438425609629307 0.3617985 0.2843628 prediction 0.427937863885294 Functional Loss - PRPH ENSG00000135406 CDS Human protein_coding chr12:49690254 chr12:49690256 synonymous SNV . 0 23 hm5C_associated_SNPs_86435 0 0 0 0 2 PRPH chr12:49690310 5'GT 49690310 Upstream 55bp
chr22 50649090 50649090 1 + C T COAD 50649087 + 50649067 50649107 41 CCCGACCACGTGTGCAATGCCTCCGACAACACCGGCCGCTA CCCGACCACGTGTGCAATGCCTCTGACAACACCGGCCGCTA < 41bp 0.751195774231897 0.537228469472076 0.11604068 0.116464764 prediction 0.427934609519642 Functional Loss - SELENOO ENSG00000073169 CDS Human protein_coding chr22:50649087 chr22:50649090 unknown . 0 24 hm5C_associated_SNPs_86437 0 0 1 0 1 SELENOO chr22:50649060 3'AG 50649060 Downstream 31bp
chr10 120877149 120877149 1 + C T HNSC 120877147 + 120877127 120877167 41 CCTTAGTAAGGATTTTGATGCCCGAAAGGCCTACCTGGCTG CCTTAGTAAGGATTTTGATGCCTGAAAGGCCTACCTGGCTG < 41bp 0.713964809651214 0.436748069060977 0.080697745 0.12814534 prediction 0.427929619302428 Functional Loss - FAM45A ENSG00000119979 CDS Human protein_coding chr10:120877147 chr10:120877149 stopgain 0.948 1 23 hm5C_associated_SNPs_86440 0 0 1 0 1 FAM45A chr10:120877179 5'GT 120877179 Upstream 31bp
chr4 20490493 20490493 1 + C T rs117793863 20490490 + 20490470 20490510 41 GACTGCCACCTGGCCTGGCTCTCCGACTGGCTTCGCCAAAG GACTGCCACCTGGCCTGGCTCTCTGACTGGCTTCGCCAAAG < 41bp 0.713964552209912 0.496748133058782 0.27491146 0.075458944 prediction 0.427929104419824 Functional Loss - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20490490 chr4:20490493 synonymous SNV . 0 24 hm5C_associated_SNPs_86441 0 0 1 0 1 SLIT2 chr4:20490442 3'AG 20490442 Downstream 52bp
chr1 156255699 156255699 1 + C T LGG 156255697 + 156255677 156255717 41 CTTCCTGCCGTTTGATGTCCCACGGCTGCCCACCATGAGTT CTTCCTGCCGTTTGATGTCCCATGGCTGCCCACCATGAGTT < 41bp 0.713963392975671 0.453274169082787 0.04001704 0.064153105 prediction 0.427926785951342 Functional Loss - TMEM79 ENSG00000163472 CDS Human protein_coding chr1:156255697 chr1:156255699 nonsynonymous SNV 0.968 2 23 hm5C_associated_SNPs_86442 0 0 0 0 1 TMEM79 chr1:156255774 5'GT 156255774 Upstream 76bp
chr19 11546475 11546475 1 + C T rs45450094 11546473 + 11546453 11546493 41 TTTCTTTCTGCAGCAGGAACCGCGGCTGCTGGACAAGAGGG TTTCTTTCTGCAGCAGGAACCGTGGCTGCTGGACAAGAGGG < 41bp 0.756380432720631 0.542417892863346 0.7037121 0.38082346 prediction 0.427925079714569 Functional Loss - PRKCSH ENSG00000130175 UTR5 Human protein_coding chr19:11546473 chr19:11546475 . . 0 23 hm5C_associated_SNPs_86443 1 0 1 0 2 CCDC151 chr19:11546527 5'GT 11546527 Upstream 53bp
chr19 11546475 11546475 1 + C T rs45450094 11546473 + 11546453 11546493 41 TTTCTTTCTGCAGCAGGAACCGCGGCTGCTGGACAAGAGGG TTTCTTTCTGCAGCAGGAACCGTGGCTGCTGGACAAGAGGG < 41bp 0.756380432720631 0.542417892863346 0.7037121 0.38082346 prediction 0.427925079714569 Functional Loss - PRKCSH ENSG00000130175 UTR5 Human protein_coding chr19:11546473 chr19:11546475 . . 0 23 hm5C_associated_SNPs_86443 1 0 1 0 2 CCDC151 chr19:11546531 5'GT 11546531 Upstream 57bp
chr16 23700890 23700890 1 + G A LUSC 23700887 + 23700867 23700907 41 CAGGTGCCAACATCACGCCGCGCGAAGGTGATGAGCTCGCC CAGGTGCCAACATCACGCCGCGCAAAGGTGATGAGCTCGCC < 41bp 0.713961678563215 0.469880937449951 0.23575178 0.14831138 prediction 0.42792335712643 Functional Loss - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700887 chr16:23700890 nonsynonymous SNV 0.420 1 24 hm5C_associated_SNPs_86444 0 0 1 0 1 PLK1 chr16:23700815 3'AG 23700815 Downstream 76bp
chr4 352040 352040 1 + G A rs150421615 352037 + 352017 352057 41 CCCAGACTGGAGTGCAATGGCACGATCTTGGCTGACTGCAA CCCAGACTGGAGTGCAATGGCACAATCTTGGCTGACTGCAA < 41bp 0.754884934983761 0.540926911627426 0.38701236 0.18295345 prediction 0.42791604671267 Functional Loss - ZNF141 ENSG00000131127 intronic Human protein_coding chr4:352037 chr4:352040 . . 0 24 hm5C_associated_SNPs_86447 0 0 0 0 1 ZNF141 chr4:351997 3'AG 351997 Downstream 44bp
chr17 38975393 38975393 1 + C T LUAD 38975391 + 38975371 38975411 41 GCCGCCGCCGAAACTTCCGCCGCCGCGTCCGCCGCCTCCGG GCCGCCGCCGAAACTTCCGCCGTCGCGTCCGCCGCCTCCGG < 41bp 0.772433368488548 0.558482586662145 0.2777984 0.2543169 prediction 0.427901563652806 Functional Loss - KRT10 ENSG00000186395 CDS Human protein_coding chr17:38975391 chr17:38975393 nonsynonymous SNV 0.039 2 23 hm5C_associated_SNPs_86448 0 0 0 0 2 TMEM99 chr17:38975422 5'GT 38975422 Upstream 30bp
chr17 38975393 38975393 1 + C T LUAD 38975391 + 38975371 38975411 41 GCCGCCGCCGAAACTTCCGCCGCCGCGTCCGCCGCCTCCGG GCCGCCGCCGAAACTTCCGCCGTCGCGTCCGCCGCCTCCGG < 41bp 0.772433368488548 0.558482586662145 0.2777984 0.2543169 prediction 0.427901563652806 Functional Loss - KRT10 ENSG00000186395 CDS Human protein_coding chr17:38975391 chr17:38975393 nonsynonymous SNV 0.039 2 23 hm5C_associated_SNPs_86448 0 0 0 0 2 TMEM99 chr17:38975460 5'GT 38975460 Upstream 68bp
chr19 45295660 45295660 1 + G A UCEC 45295657 + 45295637 45295677 41 CAGGAGCAGCTGCAGCTCTACTGGGCCATGGACTCCACATT CAGGAGCAGCTGCAGCTCTACTGAGCCATGGACTCCACATT < 41bp 0.713950754848909 0.463941356712156 0.573532 0.30038923 prediction 0.427901509697818 Functional Loss - CBLC ENSG00000142273 CDS Human protein_coding chr19:45295657 chr19:45295660 stopgain 0.986 0 24 hm5C_associated_SNPs_86449 0 0 0 0 1 CBLC chr19:45295640 3'AG 45295640 Downstream 21bp
chr3 63967927 63967927 1 + C T UCEC 63967924 + 63967904 63967944 41 GGATGGCACACTACTGAAATCTGCGGTGGGGCCAACCTGTC GGATGGCACACTACTGAAATCTGTGGTGGGGCCAACCTGTC < 41bp 0.763121585264106 0.54917403417108 0.2241945 0.15865219 prediction 0.427895102186052 Functional Loss - ATXN7 ENSG00000163635 CDS Human protein_coding chr3:63967924 chr3:63967927 nonsynonymous SNV 0.948 1 24 hm5C_associated_SNPs_86451 0 0 1 0 1 ATXN7 chr3:63967862 3'AG 63967862 Downstream 66bp
chr5 56558503 56558503 1 + G T UCEC 56558501 + 56558481 56558521 41 AAGTTTGGACCGTGGAAGAACAGCACTTTCAAACCCACAAC AAGTTTGGACCGTGGAAGAACATCACTTTCAAACCCACAAC < 41bp 0.713945411701655 0.414974395583061 0.21557307 0.21027693 prediction 0.42789082340331 Functional Loss - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56558501 chr5:56558503 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_86452 0 0 1 20 1 GPBP1 chr5:56558421 3'AG 56558421 Downstream 83bp
chr11 130340918 130340918 1 + C T LUAD 130340915 + 130340895 130340935 41 GTGGCATGGGTGCCCAAGTACTCCGGCGTGTCTCCCCGGGA GTGGCATGGGTGCCCAAGTACTCTGGCGTGTCTCCCCGGGA < 41bp 0.73825184777661 0.524312184837983 0.53006476 0.27345687 prediction 0.427879325877253 Functional Loss - ADAMTS15 ENSG00000166106 CDS Human protein_coding chr11:130340915 chr11:130340918 synonymous SNV . 0 24 hm5C_associated_SNPs_86456 0 0 0 0 1 ADAMTS15 chr11:130340996 5'GT 130340996 Upstream 79bp
chr19 3532511 3532511 1 + G A UCEC 3532508 + 3532488 3532528 41 TCGCCTGGTCCCCACATCAGCACGGGCTGCTGGCCTCGGGG TCGCCTGGTCCCCACATCAGCACAGGCTGCTGGCCTCGGGG < 41bp 0.818159962837686 0.604220788874565 0.7770002 0.3799026 prediction 0.427878347926242 Functional Loss - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3532508 chr19:3532511 nonsynonymous SNV 0.313 4 24 hm5C_associated_SNPs_86457 0 0 1 0 1 FZR1 chr19:3532415 3'AG 3532415 Downstream 97bp
chr5 121786334 121786334 1 - C A UCEC 121786337 - 121786317 121786357 41 GCTGGAGGCTGACAGGCTTCCAAGAACCTGAATCCCCTCTT GCTGGAGGCTGACAGGCTTCCAATAACCTGAATCCCCTCTT < 41bp 0.928156956542273 0.714222230895873 0.87480897 0.26019132 prediction 0.427869451292801 Functional Loss - SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121786337 chr5:121786334 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_86459 0 0 0 0 2 SNCAIP chr5:121786242 5'GT 121786242 Upstream 93bp
chr5 121786334 121786334 1 - C A UCEC 121786337 - 121786317 121786357 41 GCTGGAGGCTGACAGGCTTCCAAGAACCTGAATCCCCTCTT GCTGGAGGCTGACAGGCTTCCAATAACCTGAATCCCCTCTT < 41bp 0.928156956542273 0.714222230895873 0.87480897 0.26019132 prediction 0.427869451292801 Functional Loss - SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121786337 chr5:121786334 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_86459 0 0 0 0 2 SNCAIP chr5:121786361 3'AG 121786361 Downstream 28bp
chr14 69925138 69925138 1 + C T COAD 69925135 + 69925115 69925155 41 GGGAGTGGCCATGCTTTTCTCTGCCGGGACATTTCTTTATG GGGAGTGGCCATGCTTTTCTCTGTCGGGACATTTCTTTATG < 41bp 0.720459697517115 0.506526964004318 0.07761842 0.02419594 prediction 0.427865467025595 Functional Loss - SLC39A9 ENSG00000029364 CDS Human protein_coding chr14:69925135 chr14:69925138 nonsynonymous SNV 0.977 4 24 hm5C_associated_SNPs_86460 0 0 1 0 1 SLC39A9 chr14:69925080 3'AG 69925080 Downstream 59bp
chr16 2255420 2255420 1 + G A rs533296599 2255417 + 2255397 2255437 41 GCCCGCGCCATGGTCTCGCCCTAGGGAGCCATCGATAACTC GCCCGCGCCATGGTCTCGCCCTAAGGAGCCATCGATAACTC < 41bp 0.781798620541248 0.567866596229459 0.6754202 0.132083 prediction 0.427864048623578 Functional Loss - MLST8 ENSG00000167965 splicing Human protein_coding chr16:2255417 chr16:2255420 . . 0 24 hm5C_associated_SNPs_86461 0 0 0 0 1 MLST8 chr16:2255513 5'GT 2255513 Upstream 94bp
chr8 99961162 99961162 1 + A C rs186206047 99961158 + 99961138 99961178 41 GAAGAAAGGGTTGGTCCCCTCAGCACCCCCAGCATCCCGGA GAAGAAAGGGTTGGTCCCCTCAGCCCCCCCAGCATCCCGGA < 41bp 0.93673205186045 0.722800311037311 0.8254577 0.7772608 prediction 0.427863481646278 Functional Loss - OSR2 ENSG00000164920 CDS Human protein_coding chr8:99961158 chr8:99961162 synonymous SNV . 0 25 hm5C_associated_SNPs_86462 0 0 0 0 1 OSR2 chr8:99961067 3'AG 99961067 Downstream 96bp
chr5 52778769 52778769 1 + G T BLCA 52778767 + 52778747 52778787 41 CTGCCAGGTCCTGTACAAGACCGAACTGAGCAAGGAGGAGT CTGCCAGGTCCTGTACAAGACCTAACTGAGCAAGGAGGAGT < 41bp 0.713929603426295 0.379005469088635 0.17917159 0.20460308 prediction 0.42785920685259 Functional Loss - FST ENSG00000134363 CDS Human protein_coding chr5:52778767 chr5:52778769 stopgain 0.998 1 23 hm5C_associated_SNPs_86465 0 0 1 0 1 FST chr5:52778710 3'AG 52778710 Downstream 60bp
chr1 32050329 32050329 1 + G T UCEC 32050325 + 32050305 32050345 41 TCCCACAGCCTTCGAGGCCTCTGAGAAGTGGCCCAACCTGA TCCCACAGCCTTCGAGGCCTCTGATAAGTGGCCCAACCTGA < 41bp 0.720583185008492 0.50665833678244 0.2304739 0.14295352 prediction 0.427849696452105 Functional Loss - TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32050325 chr1:32050329 nonsynonymous SNV 0.963 1 25 hm5C_associated_SNPs_86466 0 0 0 0 2 TINAGL1 chr1:32050279 3'AG 32050279 Downstream 51bp
chr1 32050329 32050329 1 + G T UCEC 32050325 + 32050305 32050345 41 TCCCACAGCCTTCGAGGCCTCTGAGAAGTGGCCCAACCTGA TCCCACAGCCTTCGAGGCCTCTGATAAGTGGCCCAACCTGA < 41bp 0.720583185008492 0.50665833678244 0.2304739 0.14295352 prediction 0.427849696452105 Functional Loss - TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32050325 chr1:32050329 nonsynonymous SNV 0.963 1 25 hm5C_associated_SNPs_86466 0 0 0 0 2 TINAGL1 chr1:32050402 5'GT 32050402 Upstream 74bp
chr7 76111908 76111908 1 + G T OV 76111904 + 76111884 76111924 41 GTCGTCTGGGAGTGGCTGAGCGACGATGGCTCCTGGACTGC GTCGTCTGGGAGTGGCTGAGCGACTATGGCTCCTGGACTGC < 41bp 0.732542864351457 0.518627013227232 0.22836319 0.15388969 prediction 0.427831702248449 Functional Loss - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76111904 chr7:76111908 nonsynonymous SNV 0.129 4 25 hm5C_associated_SNPs_86471 0 0 1 0 1 DTX2 chr7:76111825 3'AG 76111825 Downstream 84bp
chr11 10786162 10786162 1 + C T UCEC 10786160 + 10786140 10786180 41 CACGATGAGCATTACTATAACGCCATTTCCGTTACCACGTC CACGATGAGCATTACTATAACGTCATTTCCGTTACCACGTC < 41bp 0.875620883948629 0.661706112395517 0.057950646 0.053379923 prediction 0.427829543106224 Functional Loss - CTR9 ENSG00000198730 CDS Human protein_coding chr11:10786160 chr11:10786162 nonsynonymous SNV 0.972 2 23 hm5C_associated_SNPs_86472 0 0 1 0 1 CTR9 chr11:10786095 3'AG 10786095 Downstream 68bp
chr1 75606775 75606775 1 + A C LUSC 75606771 + 75606751 75606791 41 ATTAAAGACAAAGACATTTTCTGCAAACTTGATTATTTCAG ATTAAAGACAAAGACATTTTCTGCCAACTTGATTATTTCAG < 41bp 0.713913663860461 0.281695226707486 0.2908746 0.053243697 prediction 0.427827327720921 Functional Loss - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75606771 chr1:75606775 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_86473 0 0 0 0 1 LHX8 chr1:75606791 5'GT 75606791 Upstream 17bp
chr1 75606774 75606774 1 + C T UCEC 75606771 + 75606751 75606791 41 ATTAAAGACAAAGACATTTTCTGCAAACTTGATTATTTCAG ATTAAAGACAAAGACATTTTCTGTAAACTTGATTATTTCAG < 41bp 0.713913663860461 0.487658886218266 0.2908746 0.12844509 prediction 0.427827327720921 Functional Loss - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75606771 chr1:75606774 synonymous SNV . 0 24 hm5C_associated_SNPs_86474 0 0 0 0 1 LHX8 chr1:75606791 5'GT 75606791 Upstream 18bp
chr12 117287187 117287187 1 + G A LUSC 117287184 + 117287164 117287204 41 CGCACCTGCCCGCTCTGCCGCTCGGTCGCCGTGGACACCCT CGCACCTGCCCGCTCTGCCGCTCAGTCGCCGTGGACACCCT < 41bp 0.794765953763713 0.58085408631907 0.14846459 0.20043626 prediction 0.427823734889286 Functional Loss - RNFT2 ENSG00000135119 CDS Human protein_coding chr12:117287184 chr12:117287187 synonymous SNV . 0 24 hm5C_associated_SNPs_86475 0 0 1 0 1 RNFT2 chr12:117287119 3'AG 117287119 Downstream 69bp
chr2 228147159 228147159 1 + G A UCEC 228147156 + 228147136 228147176 41 ATCAGGATTTCCTGGAGAAACTGGATCACCAGGAATTCCAG ATCAGGATTTCCTGGAGAAACTGAATCACCAGGAATTCCAG < 41bp 0.788869800882259 0.574958326971278 0.8791485 0.7051811 prediction 0.427822947821961 Functional Loss - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228147156 chr2:228147159 nonsynonymous SNV 0.987 5 24 hm5C_associated_SNPs_86477 0 0 0 0 2 COL4A3 chr2:228147081 3'AG 228147081 Downstream 79bp
chr2 228147159 228147159 1 + G A UCEC 228147156 + 228147136 228147176 41 ATCAGGATTTCCTGGAGAAACTGGATCACCAGGAATTCCAG ATCAGGATTTCCTGGAGAAACTGAATCACCAGGAATTCCAG < 41bp 0.788869800882259 0.574958326971278 0.8791485 0.7051811 prediction 0.427822947821961 Functional Loss - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228147156 chr2:228147159 nonsynonymous SNV 0.987 5 24 hm5C_associated_SNPs_86477 0 0 0 0 2 COL4A3 chr2:228147248 5'GT 228147248 Upstream 90bp
chr16 70502853 70502853 1 + C T STAD 70502850 + 70502830 70502870 41 TGCACCTACCTAGGCTTGGACTCCGGAGCCCGGCCTGTCCA TGCACCTACCTAGGCTTGGACTCTGGAGCCCGGCCTGTCCA < 41bp 0.739610018513191 0.525702227860455 0.75941944 0.43828824 prediction 0.427815581305472 Functional Loss - FUK ENSG00000157353 CDS Human protein_coding chr16:70502850 chr16:70502853 synonymous SNV . 0 24 hm5C_associated_SNPs_86478 0 0 1 0 1 FUK chr16:70502871 5'GT 70502871 Upstream 19bp
chr5 37727078 37727078 1 + G A BLCA 37727075 + 37727055 37727095 41 CAAGACCGATGACAGTAATCCTCGGGAAGCCATTTTGCGTC CAAGACCGATGACAGTAATCCTCAGGAAGCCATTTTGCGTC < 41bp 0.740805276527601 0.526898454476071 0.4722027 0.0652419 prediction 0.42781364410306 Functional Loss - WDR70 ENSG00000082068 CDS Human protein_coding chr5:37727075 chr5:37727078 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_86479 0 0 1 0 2 WDR70 chr5:37726985 3'AG 37726985 Downstream 94bp
chr5 37727078 37727078 1 + G A BLCA 37727075 + 37727055 37727095 41 CAAGACCGATGACAGTAATCCTCGGGAAGCCATTTTGCGTC CAAGACCGATGACAGTAATCCTCAGGAAGCCATTTTGCGTC < 41bp 0.740805276527601 0.526898454476071 0.4722027 0.0652419 prediction 0.42781364410306 Functional Loss - WDR70 ENSG00000082068 CDS Human protein_coding chr5:37727075 chr5:37727078 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_86479 0 0 1 0 2 WDR70 chr5:37727147 5'GT 37727147 Upstream 70bp
chr11 134244523 134244523 1 + A C STAD 134244519 + 134244499 134244539 41 TGGGAGAAGGGGGTTGTATTCATCAATGGCCAGAACCTTGG TGGGAGAAGGGGGTTGTATTCATCCATGGCCAGAACCTTGG < 41bp 0.713902877397538 0.294218389601138 0.40071863 0.8444886 prediction 0.427805754795076 Functional Loss - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134244519 chr11:134244523 nonsynonymous SNV 0.984 5 25 hm5C_associated_SNPs_86482 0 0 1 0 2 GLB1L2 chr11:134244496 3'AG 134244496 Downstream 28bp
chr11 134244523 134244523 1 + A C STAD 134244519 + 134244499 134244539 41 TGGGAGAAGGGGGTTGTATTCATCAATGGCCAGAACCTTGG TGGGAGAAGGGGGTTGTATTCATCCATGGCCAGAACCTTGG < 41bp 0.713902877397538 0.294218389601138 0.40071863 0.8444886 prediction 0.427805754795076 Functional Loss - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134244519 chr11:134244523 nonsynonymous SNV 0.984 5 25 hm5C_associated_SNPs_86482 0 0 1 0 2 GLB1L2 chr11:134244612 5'GT 134244612 Upstream 90bp
chr4 154214187 154214187 1 + G A LIHC 154214184 + 154214164 154214204 41 ACTGCCATGTGTCGGGAGTGCACGGAGGGGGAGCACGCAGA ACTGCCATGTGTCGGGAGTGCACAGAGGGGGAGCACGCAGA < 41bp 0.795159332010809 0.581257481869422 0.8764154 0.45272332 prediction 0.427803700282774 Functional Loss - TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154214184 chr4:154214187 synonymous SNV . 0 24 hm5C_associated_SNPs_86483 0 0 0 0 2 TRIM2 chr4:154214134 3'AG 154214134 Downstream 54bp
chr4 154214187 154214187 1 + G A LIHC 154214184 + 154214164 154214204 41 ACTGCCATGTGTCGGGAGTGCACGGAGGGGGAGCACGCAGA ACTGCCATGTGTCGGGAGTGCACAGAGGGGGAGCACGCAGA < 41bp 0.795159332010809 0.581257481869422 0.8764154 0.45272332 prediction 0.427803700282774 Functional Loss - TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154214184 chr4:154214187 synonymous SNV . 0 24 hm5C_associated_SNPs_86483 0 0 0 0 2 TRIM2 chr4:154214285 5'GT 154214285 Upstream 99bp
chr3 52836787 52836787 1 + G T UCEC 52836784 + 52836764 52836804 41 GGGAATTACATTGAGCGGCTCTGGGCCTACCTCACCATTGA GGGAATTACATTGAGCGGCTCTGTGCCTACCTCACCATTGA < 41bp 0.713898231438429 0.302547550586326 0.6969848 0.17506748 prediction 0.427796462876858 Functional Loss - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52836784 chr3:52836787 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_86486 0 0 1 0 1 ITIH3 chr3:52836822 5'GT 52836822 Upstream 36bp
chr19 19648141 19648141 1 + G C BLCA 19648137 + 19648117 19648157 41 TCCTCCCTCAGGCTGGGACGCAGAGACCGGCAGCGATTCGG TCCTCCCTCAGGCTGGGACGCAGACACCGGCAGCGATTCGG < 41bp 0.713896028688779 0.398243401001204 0.8956492 0.66164637 prediction 0.427792057377558 Functional Loss - YJEFN3 ENSG00000250067 CDS Human protein_coding chr19:19648137 chr19:19648141 nonsynonymous SNV 0.641 0 25 hm5C_associated_SNPs_86487 0 0 0 0 1 YJEFN3 chr19:19648128 3'AG 19648128 Downstream 14bp
chr13 25284622 25284622 1 + G A STAD 25284619 + 25284599 25284639 41 CAAGGTACCAGAGGGAATACCTAGAATGGACGGGCTACACG CAAGGTACCAGAGGGAATACCTAAAATGGACGGGCTACACG < 41bp 0.800102747992084 0.586210311372583 0.63956326 0.78991234 prediction 0.427784873239003 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25284619 chr13:25284622 nonsynonymous SNV 0.075 5 24 hm5C_associated_SNPs_86491 0 0 0 0 1 ATP12A chr13:25284598 3'AG 25284598 Downstream 25bp
chr8 92092939 92092939 1 + C T UCEC 92092936 + 92092916 92092956 41 TGAAGATATTGTAAACACAGCTGCATGGGGAGGTCAGCTTG TGAAGATATTGTAAACACAGCTGTATGGGGAGGTCAGCTTG < 41bp 0.761831191721056 0.547944926256048 0.22552013 0.16025645 prediction 0.427772530930017 Functional Loss - OTUD6B ENSG00000155100 CDS Human protein_coding chr8:92092936 chr8:92092939 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_86495 0 0 1 0 2 OTUD6B chr8:92092897 3'AG 92092897 Downstream 43bp
chr8 92092939 92092939 1 + C T UCEC 92092936 + 92092916 92092956 41 TGAAGATATTGTAAACACAGCTGCATGGGGAGGTCAGCTTG TGAAGATATTGTAAACACAGCTGTATGGGGAGGTCAGCTTG < 41bp 0.761831191721056 0.547944926256048 0.22552013 0.16025645 prediction 0.427772530930017 Functional Loss - OTUD6B ENSG00000155100 CDS Human protein_coding chr8:92092936 chr8:92092939 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_86495 0 0 1 0 2 OTUD6B chr8:92092958 5'GT 92092958 Upstream 20bp
chr7 34888209 34888209 1 + C T STAD 34888206 + 34888186 34888226 41 TGTGATCATTCAGAACCTGCCAGCATTGAATAGTGCCATCA TGTGATCATTCAGAACCTGCCAGTATTGAATAGTGCCATCA < 41bp 0.752495523784323 0.538609332665048 0.06615245 0.060852766 prediction 0.42777238223855 Functional Loss - NPSR1 ENSG00000187258 CDS Human protein_coding chr7:34888206 chr7:34888209 nonsynonymous SNV 0.984 1 24 hm5C_associated_SNPs_86496 0 0 0 0 1 NPSR1 chr7:34888275 5'GT 34888275 Upstream 67bp
chr15 39882146 39882146 1 + C T UCEC 39882143 + 39882123 39882163 41 TACGCTGGCAATGGCATCATCTGCGGGGAGGACACAGACCT TACGCTGGCAATGGCATCATCTGTGGGGAGGACACAGACCT < 41bp 0.765962919777109 0.552076887201949 0.71326303 0.5527509 prediction 0.42777206515032 Functional Loss - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39882143 chr15:39882146 synonymous SNV . 0 24 hm5C_associated_SNPs_86497 0 0 1 0 1 THBS1 chr15:39882224 5'GT 39882224 Upstream 79bp
chr6 109762607 109762607 1 + T C CESC 109762606 + 109762586 109762626 41 GGGCCGACCGCATGAGGCGCCTGGGAGACTTTCTGAACCAG GGGCCGACCGCATGAGGCGCCCGGGAGACTTTCTGAACCAG < 41bp 0.79988216329372 0.58599755514434 0.54381007 0.67699754 prediction 0.427769216298759 Functional Loss - SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109762606 chr6:109762607 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_86499 0 0 0 0 2 SMPD2 chr6:109762560 3'AG 109762560 Downstream 48bp
chr6 109762607 109762607 1 + T C CESC 109762606 + 109762586 109762626 41 GGGCCGACCGCATGAGGCGCCTGGGAGACTTTCTGAACCAG GGGCCGACCGCATGAGGCGCCCGGGAGACTTTCTGAACCAG < 41bp 0.79988216329372 0.58599755514434 0.54381007 0.67699754 prediction 0.427769216298759 Functional Loss - SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109762606 chr6:109762607 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_86499 0 0 0 0 2 SMPD2 chr6:109762656 5'GT 109762656 Upstream 50bp
chr21 44438312 44438312 1 + C T LGG 44438309 + 44438289 44438329 41 AGTGGTCACACAGACATTGTCGCCTGGGACAATTAGGATCC AGTGGTCACACAGACATTGTCGCTTGGGACAATTAGGATCC < 41bp 0.770401170744098 0.556516816549832 0.48219 0.13811398 prediction 0.427768708388533 Functional Loss - PKNOX1 ENSG00000160199 CDS Human protein_coding chr21:44438309 chr21:44438312 nonsynonymous SNV 0.281 5 24 hm5C_associated_SNPs_86500 0 0 1 0 2 PKNOX1 chr21:44438243 3'AG 44438243 Downstream 70bp
chr21 44438312 44438312 1 + C T LGG 44438309 + 44438289 44438329 41 AGTGGTCACACAGACATTGTCGCCTGGGACAATTAGGATCC AGTGGTCACACAGACATTGTCGCTTGGGACAATTAGGATCC < 41bp 0.770401170744098 0.556516816549832 0.48219 0.13811398 prediction 0.427768708388533 Functional Loss - PKNOX1 ENSG00000160199 CDS Human protein_coding chr21:44438309 chr21:44438312 nonsynonymous SNV 0.281 5 24 hm5C_associated_SNPs_86500 0 0 1 0 2 PKNOX1 chr21:44438340 5'GT 44438340 Upstream 29bp
chr3 50232078 50232078 1 + G A SKCM 50232075 + 50232055 50232095 41 CGCACCTCAGCATCTGTTTCCCGGACTACGATGGTGAGAAG CGCACCTCAGCATCTGTTTCCCGAACTACGATGGTGAGAAG < 41bp 0.79856839252336 0.584692618752124 0.82438266 0.41006815 prediction 0.427751547542472 Functional Loss - GNAT1 ENSG00000114349 CDS Human protein_coding chr3:50232075 chr3:50232078 nonsynonymous SNV 0.521 3 24 hm5C_associated_SNPs_86504 0 0 0 0 1 GNAT1 chr3:50232087 5'GT 50232087 Upstream 10bp
chr1 150476871 150476871 1 + G A OV 150476868 + 150476848 150476888 41 ATCAGTGTGGGACAATTCAGCTTGACTTCCAACTGCCCCTG ATCAGTGTGGGACAATTCAGCTTAACTTCCAACTGCCCCTG < 41bp 0.804246279661795 0.590371712429714 0.025891662 0.010243952 prediction 0.42774913446416 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150476868 chr1:150476871 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_86505 0 0 1 0 2 TARS2 chr1:150476811 3'AG 150476811 Downstream 61bp
chr1 150476871 150476871 1 + G A OV 150476868 + 150476848 150476888 41 ATCAGTGTGGGACAATTCAGCTTGACTTCCAACTGCCCCTG ATCAGTGTGGGACAATTCAGCTTAACTTCCAACTGCCCCTG < 41bp 0.804246279661795 0.590371712429714 0.025891662 0.010243952 prediction 0.42774913446416 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150476868 chr1:150476871 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_86505 0 0 1 0 2 TARS2 chr1:150476911 5'GT 150476911 Upstream 41bp
chr2 97007517 97007517 1 + G A HNSC 97007514 + 97007494 97007534 41 ATATTCCTGGCACCCCAGTCCTCGAAGACTTTCCTCAGAAT ATATTCCTGGCACCCCAGTCCTCAAAGACTTTCCTCAGAAT < 41bp 0.810677468275229 0.596807101941406 0.3656156 0.07313526 prediction 0.427740732667647 Functional Loss - NCAPH ENSG00000121152 CDS Human protein_coding chr2:97007514 chr2:97007517 nonsynonymous SNV 0.987 0 24 hm5C_associated_SNPs_86510 0 0 1 0 1 NCAPH chr2:97007452 3'AG 97007452 Downstream 66bp
chr15 57929945 57929945 1 + G T SKCM 57929942 + 57929922 57929962 41 AGAACATGAAACAGAAATGTCTGGGGAGTTAACTGATTCTG AGAACATGAAACAGAAATGTCTGTGGAGTTAACTGATTCTG < 41bp 0.713870083139789 0.330148077807098 0.26748186 0.07360062 prediction 0.427740166279578 Functional Loss - GCOM1;MYZAP ENSG00000137878;ENSG00000263155 CDS Human other chr15:57929942 chr15:57929945 nonsynonymous SNV 0.466 0 24 hm5C_associated_SNPs_86511 0 0 0 0 2 GCOM1;MYZAP chr15:57929893 3'AG 57929893 Downstream 53bp
chr15 57929945 57929945 1 + G T SKCM 57929942 + 57929922 57929962 41 AGAACATGAAACAGAAATGTCTGGGGAGTTAACTGATTCTG AGAACATGAAACAGAAATGTCTGTGGAGTTAACTGATTCTG < 41bp 0.713870083139789 0.330148077807098 0.26748186 0.07360062 prediction 0.427740166279578 Functional Loss - GCOM1;MYZAP ENSG00000137878;ENSG00000263155 CDS Human other chr15:57929942 chr15:57929945 nonsynonymous SNV 0.466 0 24 hm5C_associated_SNPs_86511 0 0 0 0 2 GCOM1;MYZAP chr15:57929972 5'GT 57929972 Upstream 28bp
chrX 79277840 79277840 1 + C T rs138387312 79277838 + 79277818 79277858 41 GGAGACCCAGCAAAAGAAAACTCCAAGACCCAATACAGGCG GGAGACCCAGCAAAAGAAAACTTCAAGACCCAATACAGGCG < 41bp 0.863954781814356 0.650085192923497 0.93371 0.2287294 prediction 0.427739177781717 Functional Loss - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79277838 chrX:79277840 synonymous SNV . 0 23 hm5C_associated_SNPs_86512 1 0 0 0 1 TBX22 chrX:79277767 3'AG 79277767 Downstream 74bp
chr16 88780076 88780076 1 + G A UCEC 88780073 + 88780053 88780093 41 AGGGCTTCTCGGATGAGCGGCACGGGGACGTGGTGGTGGTG AGGGCTTCTCGGATGAGCGGCACAGGGACGTGGTGGTGGTG < 41bp 0.713868580327966 0.461033630336465 0.86561763 0.86236644 prediction 0.427737160655931 Functional Loss - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88780073 chr16:88780076 nonsynonymous SNV 0.750 4 24 hm5C_associated_SNPs_86513 0 0 1 0 1 CTU2 chr16:88780055 3'AG 88780055 Downstream 22bp
chr19 43858465 43858465 1 + C T UCEC 43858462 + 43858442 43858482 41 CCCGGCCTCTCCCTGATCTCCTACACCTTCGTGTGCCGCCA CCCGGCCTCTCCCTGATCTCCTATACCTTCGTGTGCCGCCA < 41bp 0.72916519159566 0.515298092931524 0.34153026 0.16273704 prediction 0.427734197328271 Functional Loss - CD177 ENSG00000204936 CDS Human protein_coding chr19:43858462 chr19:43858465 synonymous SNV . 0 24 hm5C_associated_SNPs_86515 0 0 0 0 1 CD177 chr19:43858544 5'GT 43858544 Upstream 80bp
chr2 37014328 37014328 1 + C T UCEC 37014325 + 37014305 37014345 41 GGAGCACCAGCATTGGCAAACGGCGATTCCGAATCCAGAAG GGAGCACCAGCATTGGCAAACGGTGATTCCGAATCCAGAAG < 41bp 0.713864727545847 0.494111382935138 0.37304202 0.29059398 prediction 0.427729455091694 Functional Loss - VIT ENSG00000205221 CDS Human protein_coding chr2:37014325 chr2:37014328 stopgain 0.629 1 24 hm5C_associated_SNPs_86517 0 0 0 0 2 VIT chr2:37014272 3'AG 37014272 Downstream 57bp
chr2 37014328 37014328 1 + C T UCEC 37014325 + 37014305 37014345 41 GGAGCACCAGCATTGGCAAACGGCGATTCCGAATCCAGAAG GGAGCACCAGCATTGGCAAACGGTGATTCCGAATCCAGAAG < 41bp 0.713864727545847 0.494111382935138 0.37304202 0.29059398 prediction 0.427729455091694 Functional Loss - VIT ENSG00000205221 CDS Human protein_coding chr2:37014325 chr2:37014328 stopgain 0.629 1 24 hm5C_associated_SNPs_86517 0 0 0 0 2 VIT chr2:37014419 5'GT 37014419 Upstream 92bp
chr7 5327577 5327577 1 + G A LUAD 5327574 + 5327554 5327594 41 CGGCGGAGGCGGCTCAGGGCCAGGGCCTTAGGGCCAGGGGC CGGCGGAGGCGGCTCAGGGCCAGAGCCTTAGGGCCAGGGGC < 41bp 0.828692472494267 0.614829272238416 0.91403383 0.905618 prediction 0.427726400511702 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5327574 chr7:5327577 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_86520 0 0 0 0 1 SLC29A4 chr7:5327616 5'GT 5327616 Upstream 40bp
chr5 96244744 96244744 1 + G A STAD 96244741 + 96244721 96244761 41 AAACAAGCAGCCCCGCACTTCTCGAAGGTCTGAGTTACTTG AAACAAGCAGCCCCGCACTTCTCAAAGGTCTGAGTTACTTG < 41bp 0.751006560379367 0.537143781085447 0.9527442 0.70027894 prediction 0.427725558587839 Functional Loss - ERAP2 ENSG00000164308 CDS Human protein_coding chr5:96244741 chr5:96244744 nonsynonymous SNV 0.908 0 24 hm5C_associated_SNPs_86521 0 0 0 0 2 ERAP2 chr5:96244665 3'AG 96244665 Downstream 80bp
chr5 96244744 96244744 1 + G A STAD 96244741 + 96244721 96244761 41 AAACAAGCAGCCCCGCACTTCTCGAAGGTCTGAGTTACTTG AAACAAGCAGCCCCGCACTTCTCAAAGGTCTGAGTTACTTG < 41bp 0.751006560379367 0.537143781085447 0.9527442 0.70027894 prediction 0.427725558587839 Functional Loss - ERAP2 ENSG00000164308 CDS Human protein_coding chr5:96244741 chr5:96244744 nonsynonymous SNV 0.908 0 24 hm5C_associated_SNPs_86521 0 0 0 0 2 ERAP2 chr5:96244821 5'GT 96244821 Upstream 78bp
chr21 47538546 47538546 1 + G T PAAD 47538544 + 47538524 47538564 41 CCAGGGGGACCCTGGCCGCCCAGGACGCAGAGGGCCCCCGG CCAGGGGGACCCTGGCCGCCCATGACGCAGAGGGCCCCCGG < 41bp 0.919059154195079 0.705196668498423 0.6477482 0.15270075 prediction 0.427724971393312 Functional Loss - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47538544 chr21:47538546 stopgain 0.999 1 23 hm5C_associated_SNPs_86522 0 0 0 0 2 COL6A2 chr21:47538528 3'AG 47538528 Downstream 19bp
chr21 47538546 47538546 1 + G T PAAD 47538544 + 47538524 47538564 41 CCAGGGGGACCCTGGCCGCCCAGGACGCAGAGGGCCCCCGG CCAGGGGGACCCTGGCCGCCCATGACGCAGAGGGCCCCCGG < 41bp 0.919059154195079 0.705196668498423 0.6477482 0.15270075 prediction 0.427724971393312 Functional Loss - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47538544 chr21:47538546 stopgain 0.999 1 23 hm5C_associated_SNPs_86522 0 0 0 0 2 COL6A2 chr21:47538590 5'GT 47538590 Upstream 45bp
chr12 12006442 12006442 1 + G A SKCM 12006439 + 12006419 12006459 41 TTTTTCACCATTCTTCCACCCTGGAAACTCTATACACACAC TTTTTCACCATTCTTCCACCCTGAAAACTCTATACACACAC < 41bp 0.757049196980351 0.543189325928748 0.024031252 0.023578554 prediction 0.427719742103206 Functional Loss - ETV6 ENSG00000139083 CDS Human protein_coding chr12:12006439 chr12:12006442 nonsynonymous SNV 0.980 3 24 hm5C_associated_SNPs_86524 0 0 1 0 2 ETV6 chr12:12006361 3'AG 12006361 Downstream 82bp
chr12 12006442 12006442 1 + G A SKCM 12006439 + 12006419 12006459 41 TTTTTCACCATTCTTCCACCCTGGAAACTCTATACACACAC TTTTTCACCATTCTTCCACCCTGAAAACTCTATACACACAC < 41bp 0.757049196980351 0.543189325928748 0.024031252 0.023578554 prediction 0.427719742103206 Functional Loss - ETV6 ENSG00000139083 CDS Human protein_coding chr12:12006439 chr12:12006442 nonsynonymous SNV 0.980 3 24 hm5C_associated_SNPs_86524 0 0 1 0 2 ETV6 chr12:12006495 5'GT 12006495 Upstream 54bp
chr1 9781593 9781593 1 + G A SKCM 9781590 + 9781570 9781610 41 GCGAGCTGACCAAATTCCTGCTGGACCGGGCCCTGGCCAAC GCGAGCTGACCAAATTCCTGCTGAACCGGGCCCTGGCCAAC < 41bp 0.713857463823455 0.461896970455957 0.39120913 0.23807561 prediction 0.427714927646911 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9781590 chr1:9781593 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_86528 0 0 0 0 2 PIK3CD chr1:9781502 3'AG 9781502 Downstream 92bp
chr1 9781593 9781593 1 + G A SKCM 9781590 + 9781570 9781610 41 GCGAGCTGACCAAATTCCTGCTGGACCGGGCCCTGGCCAAC GCGAGCTGACCAAATTCCTGCTGAACCGGGCCCTGGCCAAC < 41bp 0.713857463823455 0.461896970455957 0.39120913 0.23807561 prediction 0.427714927646911 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9781590 chr1:9781593 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_86528 0 0 0 0 2 PIK3CD chr1:9781645 5'GT 9781645 Upstream 53bp
chr19 15223284 15223284 1 + C T UCEC 15223282 + 15223262 15223302 41 CTGCCGGCACGCCAGGCGCCCACAAGGCCTCGTGCCCGCAG CTGCCGGCACGCCAGGCGCCCATAAGGCCTCGTGCCCGCAG < 41bp 0.834703597277955 0.620848911135391 0.16609538 0.07735756 prediction 0.427709372285127 Functional Loss - SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15223282 chr19:15223284 nonsynonymous SNV 0.011 1 23 hm5C_associated_SNPs_86530 0 0 0 0 1 SYDE1 chr19:15223382 5'GT 15223382 Upstream 99bp
chr19 11560122 11560122 1 + C T LUSC 11560119 + 11560099 11560139 41 AAAGAGACCATGGTGACCAGCACCACAGAGCCCAGTCGCTG AAAGAGACCATGGTGACCAGCACTACAGAGCCCAGTCGCTG < 41bp 0.742531113907705 0.528680285380786 0.041637868 0.07184735 prediction 0.427701657053839 Functional Loss - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11560119 chr19:11560122 synonymous SNV . 0 24 hm5C_associated_SNPs_86533 0 0 1 0 1 PRKCSH chr19:11560081 3'AG 11560081 Downstream 42bp
chr17 73096139 73096139 1 + G A GBM 73096136 + 73096116 73096156 41 TTCAGCTTCCAGTCAAGCATCACGGTGCTGGGCTTCTACTT TTCAGCTTCCAGTCAAGCATCACAGTGCTGGGCTTCTACTT < 41bp 0.811064192631953 0.597213470153546 0.42435744 0.2202633 prediction 0.427701444956816 Functional Loss - SLC16A5 ENSG00000170190 CDS Human protein_coding chr17:73096136 chr17:73096139 synonymous SNV . 0 24 hm5C_associated_SNPs_86534 0 0 0 0 1 SLC16A5 chr17:73096102 3'AG 73096102 Downstream 38bp
chr20 42893135 42893135 1 + G A UCEC 42893132 + 42893112 42893152 41 AGCTACCTGAAGAAGATCCTCGGGGAACTGGCCATGGTGCT AGCTACCTGAAGAAGATCCTCGGAGAACTGGCCATGGTGCT < 41bp 0.799719015744288 0.585869537810865 0.8800036 0.85232353 prediction 0.427698955866846 Functional Loss - GDAP1L1 ENSG00000124194 CDS Human protein_coding chr20:42893132 chr20:42893135 synonymous SNV . 0 24 hm5C_associated_SNPs_86537 0 0 0 0 1 GDAP1L1 chr20:42893085 3'AG 42893085 Downstream 51bp
chr10 43871011 43871011 1 + G A rs146396887 43871008 + 43870988 43871028 41 CTCCTGGCCATTGCTGGGATCGCGGCAGTTCTGAGTGAGTG CTCCTGGCCATTGCTGGGATCGCAGCAGTTCTGAGTGAGTG < 41bp 0.797179650979096 0.583330651058425 0.8374411 0.79211116 prediction 0.427697999841342 Functional Loss - FXYD4 ENSG00000150201 CDS Human protein_coding chr10:43871008 chr10:43871011 synonymous SNV . 0 24 hm5C_associated_SNPs_86540 0 0 0 0 2 FXYD4 chr10:43870947 3'AG 43870947 Downstream 65bp
chr10 43871011 43871011 1 + G A rs146396887 43871008 + 43870988 43871028 41 CTCCTGGCCATTGCTGGGATCGCGGCAGTTCTGAGTGAGTG CTCCTGGCCATTGCTGGGATCGCAGCAGTTCTGAGTGAGTG < 41bp 0.797179650979096 0.583330651058425 0.8374411 0.79211116 prediction 0.427697999841342 Functional Loss - FXYD4 ENSG00000150201 CDS Human protein_coding chr10:43871008 chr10:43871011 synonymous SNV . 0 24 hm5C_associated_SNPs_86540 0 0 0 0 2 FXYD4 chr10:43871021 5'GT 43871021 Upstream 11bp
chr2 1241704 1241704 1 + G A SKCM 1241701 + 1241681 1241721 41 CGCCCTGGACGGAGTCAGCTCTGGGATCCTCCGGTTTTACA CGCCCTGGACGGAGTCAGCTCTGAGATCCTCCGGTTTTACA < 41bp 0.802279622243445 0.588431838274917 0.876998 0.39705586 prediction 0.427695567937056 Functional Loss - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1241701 chr2:1241704 nonsynonymous SNV 0.004 4 24 hm5C_associated_SNPs_86542 0 0 0 0 2 SNTG2 chr2:1241660 3'AG 1241660 Downstream 45bp
chr2 1241704 1241704 1 + G A SKCM 1241701 + 1241681 1241721 41 CGCCCTGGACGGAGTCAGCTCTGGGATCCTCCGGTTTTACA CGCCCTGGACGGAGTCAGCTCTGAGATCCTCCGGTTTTACA < 41bp 0.802279622243445 0.588431838274917 0.876998 0.39705586 prediction 0.427695567937056 Functional Loss - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1241701 chr2:1241704 nonsynonymous SNV 0.004 4 24 hm5C_associated_SNPs_86542 0 0 0 0 2 SNTG2 chr2:1241789 5'GT 1241789 Upstream 86bp
chr20 61457179 61457179 1 + G A UCEC 61457176 + 61457156 61457196 41 CCCTCTGTTTCAGGGTGACCCTGGCCCCCCTGGGCCCGCCG CCCTCTGTTTCAGGGTGACCCTGACCCCCCTGGGCCCGCCG < 41bp 0.713847627207972 0.462063250383395 0.90639806 0.6063272 prediction 0.427695254415944 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61457176 chr20:61457179 nonsynonymous SNV 0.039 4 24 hm5C_associated_SNPs_86544 0 0 1 0 1 COL9A3 chr20:61457222 5'GT 61457222 Upstream 44bp
chr17 40441470 40441470 1 + C T UCEC 40441468 + 40441448 40441488 41 GCCCAGCAGCTGCAGGGAGACGCGCTGCGCCAGATGCAGGT GCCCAGCAGCTGCAGGGAGACGTGCTGCGCCAGATGCAGGT < 41bp 0.713847106095257 0.451852102910658 0.52331764 0.33706868 prediction 0.427694212190515 Functional Loss - STAT5A ENSG00000126561 CDS Human protein_coding chr17:40441468 chr17:40441470 nonsynonymous SNV 0.986 2 23 hm5C_associated_SNPs_86545 0 0 1 0 2 STAT5A chr17:40441420 3'AG 40441420 Downstream 51bp
chr17 40441470 40441470 1 + C T UCEC 40441468 + 40441448 40441488 41 GCCCAGCAGCTGCAGGGAGACGCGCTGCGCCAGATGCAGGT GCCCAGCAGCTGCAGGGAGACGTGCTGCGCCAGATGCAGGT < 41bp 0.713847106095257 0.451852102910658 0.52331764 0.33706868 prediction 0.427694212190515 Functional Loss - STAT5A ENSG00000126561 CDS Human protein_coding chr17:40441468 chr17:40441470 nonsynonymous SNV 0.986 2 23 hm5C_associated_SNPs_86545 0 0 1 0 2 STAT5A chr17:40441557 5'GT 40441557 Upstream 88bp
chr19 54697079 54697079 1 + C T rs7595 54697077 + 54697057 54697097 41 ATATCGCTCAGTGCTGGGCCCCCGAGGACACCATCCCACTC ATATCGCTCAGTGCTGGGCCCCTGAGGACACCATCCCACTC < 41bp 0.840684403430564 0.626838905097303 0.57683897 0.36400408 prediction 0.427690996666523 Functional Loss - TSEN34 ENSG00000170892 CDS Human protein_coding chr19:54697077 chr19:54697079 synonymous SNV . 0 23 hm5C_associated_SNPs_86547 2 1 1 0 2 TSEN34 chr19:54697030 3'AG 54697030 Downstream 50bp
chr19 54697079 54697079 1 + C T rs7595 54697077 + 54697057 54697097 41 ATATCGCTCAGTGCTGGGCCCCCGAGGACACCATCCCACTC ATATCGCTCAGTGCTGGGCCCCTGAGGACACCATCCCACTC < 41bp 0.840684403430564 0.626838905097303 0.57683897 0.36400408 prediction 0.427690996666523 Functional Loss - TSEN34 ENSG00000170892 CDS Human protein_coding chr19:54697077 chr19:54697079 synonymous SNV . 0 23 hm5C_associated_SNPs_86547 2 1 1 0 2 TSEN34 chr19:54697173 5'GT 54697173 Upstream 95bp
chr4 74607379 74607379 1 + C T STAD 74607377 + 74607357 74607397 41 ATTGAGAGTGGACCACACTGCGCCAACACAGAAATTATGTA ATTGAGAGTGGACCACACTGCGTCAACACAGAAATTATGTA < 41bp 0.713844603792989 0.431620214583757 0.012329966 0.054454565 prediction 0.427689207585978 Functional Loss - CXCL8 ENSG00000169429 CDS Human protein_coding chr4:74607377 chr4:74607379 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_86549 0 0 0 0 1 CXCL8 chr4:74607394 5'GT 74607394 Upstream 16bp
chr3 10865006 10865006 1 + G T READ 10865004 + 10864984 10865024 41 TAGAGAATTGTGTGGAGTTCCAGAAACTGAATGTGAGCAAC TAGAGAATTGTGTGGAGTTCCATAAACTGAATGTGAGCAAC < 41bp 0.713839122398154 0.379565506532302 0.70344603 0.38695553 prediction 0.427678244796308 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10865004 chr3:10865006 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_86555 0 0 1 0 2 SLC6A11 chr3:10864987 3'AG 10864987 Downstream 20bp
chr3 10865006 10865006 1 + G T READ 10865004 + 10864984 10865024 41 TAGAGAATTGTGTGGAGTTCCAGAAACTGAATGTGAGCAAC TAGAGAATTGTGTGGAGTTCCATAAACTGAATGTGAGCAAC < 41bp 0.713839122398154 0.379565506532302 0.70344603 0.38695553 prediction 0.427678244796308 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10865004 chr3:10865006 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_86555 0 0 1 0 2 SLC6A11 chr3:10865077 5'GT 10865077 Upstream 72bp
chrX 8433994 8433994 1 + T C rs757924718 8433993 + 8433973 8434013 41 AGGGGACCCAGCACGACCCCCTGAGTCAGGAGAGCGAGCTG AGGGGACCCAGCACGACCCCCCGAGTCAGGAGAGCGAGCTG < 41bp 0.762758985236951 0.548920945846539 0.07107496 0.17352423 prediction 0.427676078780823 Functional Loss - VCX3B ENSG00000205642 CDS Human other chrX:8433993 chrX:8433994 nonsynonymous SNV 0.009 2 22 hm5C_associated_SNPs_86556 0 0 0 0 1 VCX3B chrX:8434040 5'GT 8434040 Upstream 47bp
chr9 137998651 137998651 1 + A T LUAD 137998647 + 137998627 137998667 41 GTGACTGTCAAGACCTCCGGCTCGAGGTTCGGATCCTGGAT GTGACTGTCAAGACCTCCGGCTCGTGGTTCGGATCCTGGAT < 41bp 0.71383336164874 0.487144130157309 0.102932066 0.1908521 prediction 0.42766672329748 Functional Loss - OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137998647 chr9:137998651 nonsynonymous SNV 0.993 5 25 hm5C_associated_SNPs_86558 0 0 0 0 2 OLFM1 chr9:137998595 3'AG 137998595 Downstream 57bp
chr9 137998651 137998651 1 + A T LUAD 137998647 + 137998627 137998667 41 GTGACTGTCAAGACCTCCGGCTCGAGGTTCGGATCCTGGAT GTGACTGTCAAGACCTCCGGCTCGTGGTTCGGATCCTGGAT < 41bp 0.71383336164874 0.487144130157309 0.102932066 0.1908521 prediction 0.42766672329748 Functional Loss - OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137998647 chr9:137998651 nonsynonymous SNV 0.993 5 25 hm5C_associated_SNPs_86558 0 0 0 0 2 OLFM1 chr9:137998701 5'GT 137998701 Upstream 51bp
chr17 48559496 48559496 1 + G A rs34067532 48559493 + 48559473 48559513 41 CGGCTGTTGGGACGGACGCACTCGGCCTGCGATGCTCTGCG CGGCTGTTGGGACGGACGCACTCAGCCTGCGATGCTCTGCG < 41bp 0.817466600947848 0.603633282550835 0.39967924 0.1971353 prediction 0.427666636794026 Functional Loss - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48559493 chr17:48559496 synonymous SNV . 0 24 hm5C_associated_SNPs_86559 0 0 1 0 1 RSAD1 chr17:48559452 3'AG 48559452 Downstream 45bp
chr14 77319640 77319640 1 + C T BLCA 77319637 + 77319617 77319657 41 CTCTGGCCCTAGGGGAAGTCCTCCGACTCAACCGCTGCCTG CTCTGGCCCTAGGGGAAGTCCTCTGACTCAACCGCTGCCTG < 41bp 0.748384933057918 0.534553113163841 0.45405468 0.57692194 prediction 0.427663639788153 Functional Loss - LRRC74A ENSG00000100565 CDS Human protein_coding chr14:77319637 chr14:77319640 stopgain 0.926 0 24 hm5C_associated_SNPs_86560 0 0 0 1 1 LRRC74A chr14:77319629 3'AG 77319629 Downstream 12bp
chr14 39649802 39649802 1 + G A rs149115374 39649799 + 39649779 39649819 41 CAATGAAGGAAAAAGAGCATCAGGTGGTGCGTAATGAAGAA CAATGAAGGAAAAAGAGCATCAGATGGTGCGTAATGAAGAA < 41bp 0.739382550465264 0.525551316806349 0.57065463 0.38517115 prediction 0.427662467317829 Functional Loss - PNN ENSG00000100941 CDS Human protein_coding chr14:39649799 chr14:39649802 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_86561 0 0 1 0 1 PNN chr14:39649707 3'AG 39649707 Downstream 96bp
chr1 156879672 156879672 1 + G A COAD 156879669 + 156879649 156879689 41 TGGAGCCTGTACCTGCACCCCTGGGTGGCATGGGGCCCACT TGGAGCCTGTACCTGCACCCCTGAGTGGCATGGGGCCCACT < 41bp 0.810322996997863 0.596498036584743 0.8436394 0.22321746 prediction 0.427649920826239 Functional Loss - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156879669 chr1:156879672 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_86562 0 0 0 0 1 PEAR1 chr1:156879706 5'GT 156879706 Upstream 35bp
chr16 31374635 31374635 1 + G A CESC 31374632 + 31374612 31374652 41 GCCCCAGGAGAGGAGGAGAACCGGGGTGCTGTCTACCTGTT GCCCCAGGAGAGGAGGAGAACCGAGGTGCTGTCTACCTGTT < 41bp 0.815426302268538 0.601604774326395 0.9458255 0.9257906 prediction 0.427643055884286 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31374632 chr16:31374635 synonymous SNV . 0 24 hm5C_associated_SNPs_86564 0 0 0 0 1 ITGAX chr16:31374695 5'GT 31374695 Upstream 61bp
chr12 66704321 66704321 1 + C T rs148111807 66704318 + 66704298 66704338 41 GGCTATAGAAGTTTTGCTCACAGCACCTACAGGGAAAGCAG GGCTATAGAAGTTTTGCTCACAGTACCTACAGGGAAAGCAG < 41bp 0.74336249877238 0.52954318546242 0.36091873 0.37407306 prediction 0.42763862661992 Functional Loss - HELB ENSG00000127311 CDS Human protein_coding chr12:66704318 chr12:66704321 nonsynonymous SNV 0.076 4 24 hm5C_associated_SNPs_86565 0 0 1 0 1 HELB chr12:66704388 5'GT 66704388 Upstream 68bp
chr15 41770794 41770794 1 + C T OV 41770791 + 41770771 41770811 41 AACAGATGGATCCCTTTACTCGGCGGCAGTGCAAGCCTACC AACAGATGGATCCCTTTACTCGGTGGCAGTGCAAGCCTACC < 41bp 0.720550900681248 0.506746235875401 0.92992073 0.87962675 prediction 0.427609329611693 Functional Loss - RTF1 ENSG00000137815 CDS Human protein_coding chr15:41770791 chr15:41770794 nonsynonymous SNV 0.971 4 24 hm5C_associated_SNPs_86575 0 0 1 0 2 RTF1 chr15:41770746 3'AG 41770746 Downstream 49bp
chr15 41770794 41770794 1 + C T OV 41770791 + 41770771 41770811 41 AACAGATGGATCCCTTTACTCGGCGGCAGTGCAAGCCTACC AACAGATGGATCCCTTTACTCGGTGGCAGTGCAAGCCTACC < 41bp 0.720550900681248 0.506746235875401 0.92992073 0.87962675 prediction 0.427609329611693 Functional Loss - RTF1 ENSG00000137815 CDS Human protein_coding chr15:41770791 chr15:41770794 nonsynonymous SNV 0.971 4 24 hm5C_associated_SNPs_86575 0 0 1 0 2 RTF1 chr15:41770823 5'GT 41770823 Upstream 30bp
chr19 3162855 3162855 1 + C T UCEC 3162852 + 3162832 3162872 41 GACATGTACACGAGGATGTACACCGGGTGCGTGGACGGCCC GACATGTACACGAGGATGTACACTGGGTGCGTGGACGGCCC < 41bp 0.713802350198422 0.499351200950287 0.23474628 0.12106699 prediction 0.427604700396845 Functional Loss - GNA15 ENSG00000060558 CDS Human protein_coding chr19:3162852 chr19:3162855 synonymous SNV . 0 24 hm5C_associated_SNPs_86576 0 0 0 0 1 GNA15 chr19:3162791 3'AG 3162791 Downstream 65bp
chr12 129360558 129360558 1 + C T GBM 129360555 + 129360535 129360575 41 AACCTCATCTTGGCTGAGAACTGCGAGGCTGCCCTGGCTCT AACCTCATCTTGGCTGAGAACTGTGAGGCTGCCCTGGCTCT < 41bp 0.713796505458667 0.492835107458284 0.37754375 0.29154342 prediction 0.427593010917335 Functional Loss - GLT1D1 ENSG00000151948 CDS Human protein_coding chr12:129360555 chr12:129360558 synonymous SNV . 0 24 hm5C_associated_SNPs_86579 0 0 0 0 2 GLT1D1 chr12:129360459 3'AG 129360459 Downstream 100bp
chr12 129360558 129360558 1 + C T GBM 129360555 + 129360535 129360575 41 AACCTCATCTTGGCTGAGAACTGCGAGGCTGCCCTGGCTCT AACCTCATCTTGGCTGAGAACTGTGAGGCTGCCCTGGCTCT < 41bp 0.713796505458667 0.492835107458284 0.37754375 0.29154342 prediction 0.427593010917335 Functional Loss - GLT1D1 ENSG00000151948 CDS Human protein_coding chr12:129360555 chr12:129360558 synonymous SNV . 0 24 hm5C_associated_SNPs_86579 0 0 0 0 2 GLT1D1 chr12:129360607 5'GT 129360607 Upstream 50bp
chr16 50666258 50666258 1 + G A LUAD 50666255 + 50666235 50666275 41 CATTGCGTAGATGAGAACATCGAGAGGAGAAACCACTACTT CATTGCGTAGATGAGAACATCGAAAGGAGAAACCACTACTT < 41bp 0.798796286001114 0.585000019870992 0.8954836 0.7697371 prediction 0.427592532260243 Functional Loss - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50666255 chr16:50666258 synonymous SNV . 0 24 hm5C_associated_SNPs_86580 0 0 0 0 2 NKD1 chr16:50666192 3'AG 50666192 Downstream 67bp
chr16 50666258 50666258 1 + G A LUAD 50666255 + 50666235 50666275 41 CATTGCGTAGATGAGAACATCGAGAGGAGAAACCACTACTT CATTGCGTAGATGAGAACATCGAAAGGAGAAACCACTACTT < 41bp 0.798796286001114 0.585000019870992 0.8954836 0.7697371 prediction 0.427592532260243 Functional Loss - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50666255 chr16:50666258 synonymous SNV . 0 24 hm5C_associated_SNPs_86580 0 0 0 0 2 NKD1 chr16:50666319 5'GT 50666319 Upstream 62bp
chr1 32636340 32636340 1 + G A SKCM 32636337 + 32636317 32636357 41 AAATTGAGTTTCTCCAGAGCCACGAGAACCAGGAGATCTAC AAATTGAGTTTCTCCAGAGCCACAAGAACCAGGAGATCTAC < 41bp 0.74933939332457 0.535544776918828 0.5275533 0.4075371 prediction 0.427589232811484 Functional Loss - KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32636337 chr1:32636340 nonsynonymous SNV 0.984 1 24 hm5C_associated_SNPs_86581 0 0 1 0 1 KPNA6 chr1:32636308 3'AG 32636308 Downstream 33bp
chr9 131851262 131851262 1 + C T CESC 131851260 + 131851240 131851280 41 TGTTTTGCAGGAACAGACAACGCAAGCTGGGGACGAAACTG TGTTTTGCAGGAACAGACAACGTAAGCTGGGGACGAAACTG < 41bp 0.713794302039156 0.453293827386961 0.1931831 0.2184611 prediction 0.427588604078311 Functional Loss - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131851260 chr9:131851262 synonymous SNV . 0 23 hm5C_associated_SNPs_86582 0 0 1 0 1 DOLPP1 chr9:131851250 3'AG 131851250 Downstream 13bp
chr6 168442788 168442788 1 + G T UCEC 168442786 + 168442766 168442806 41 CAGGGCATGCGGAGCAGGTGCAGGCTCGACTACAGCTCGTG CAGGGCATGCGGAGCAGGTGCATGCTCGACTACAGCTCGTG < 41bp 0.713793468923655 0.342971842426535 0.60161 0.25004253 prediction 0.42758693784731 Functional Loss - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168442786 chr6:168442788 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_86584 0 0 0 0 1 KIF25 chr6:168442831 5'GT 168442831 Upstream 44bp
chr2 61304214 61304214 1 + C T OV 61304211 + 61304191 61304231 41 GTGGACATTTCAGTTCATTGCGACGTTCACATTTTCAACTG GTGGACATTTCAGTTCATTGCGATGTTCACATTTTCAACTG < 41bp 0.714350612283226 0.500561220602169 0.61421335 0.31096786 prediction 0.427578783362115 Functional Loss - KIAA1841 ENSG00000162929 CDS Human protein_coding chr2:61304211 chr2:61304214 synonymous SNV . 0 24 hm5C_associated_SNPs_86586 0 0 1 0 1 KIAA1841 chr2:61304293 5'GT 61304293 Upstream 80bp
chr4 77184954 77184954 1 + C T COAD 77184952 + 77184932 77184972 41 AGGAAAGGAATGAAGGAACCCACGAAGCTTTTAAAAAAACA AGGAAAGGAATGAAGGAACCCATGAAGCTTTTAAAAAAACA < 41bp 0.71378917459498 0.429684700587609 0.071356356 0.09540847 prediction 0.427578349189961 Functional Loss - FAM47E;FAM47E-STBD1 ENSG00000189157;ENSG00000272414 CDS Human other chr4:77184952 chr4:77184954 nonsynonymous SNV 0.003 3 23 hm5C_associated_SNPs_86587 0 0 0 0 2 FAM47E;FAM47E-STBD1 chr4:77184857 3'AG 77184857 Downstream 98bp
chr4 77184954 77184954 1 + C T COAD 77184952 + 77184932 77184972 41 AGGAAAGGAATGAAGGAACCCACGAAGCTTTTAAAAAAACA AGGAAAGGAATGAAGGAACCCATGAAGCTTTTAAAAAAACA < 41bp 0.71378917459498 0.429684700587609 0.071356356 0.09540847 prediction 0.427578349189961 Functional Loss - FAM47E;FAM47E-STBD1 ENSG00000189157;ENSG00000272414 CDS Human other chr4:77184952 chr4:77184954 nonsynonymous SNV 0.003 3 23 hm5C_associated_SNPs_86587 0 0 0 0 2 FAM47E;FAM47E-STBD1 chr4:77184996 5'GT 77184996 Upstream 43bp
chr2 238428570 238428570 1 + C T COAD 238428567 + 238428547 238428587 41 GCTAAGAAAAAGCGCCTCCTCTCCGTCCACGACTTCGACTT GCTAAGAAAAAGCGCCTCCTCTCTGTCCACGACTTCGACTT < 41bp 0.75034618114689 0.536557863137022 0.068630815 0.019141644 prediction 0.427576636019736 Functional Loss - MLPH ENSG00000115648 CDS Human protein_coding chr2:238428567 chr2:238428570 synonymous SNV . 0 24 hm5C_associated_SNPs_86589 0 0 0 0 1 MLPH chr2:238428553 3'AG 238428553 Downstream 18bp
chr19 42383352 42383352 1 + C T UCEC 42383350 + 42383330 42383370 41 AGTCCTGCGGCACCTACCTCCGCGTGCGCCGTGAGTGGCCC AGTCCTGCGGCACCTACCTCCGTGTGCGCCGTGAGTGGCCC < 41bp 0.823389551625023 0.60960242493111 0.90193975 0.9018904 prediction 0.427574253387825 Functional Loss - CD79A ENSG00000105369 CDS Human protein_coding chr19:42383350 chr19:42383352 synonymous SNV . 0 23 hm5C_associated_SNPs_86592 0 0 0 0 1 CD79A chr19:42383359 5'GT 42383359 Upstream 8bp
chr7 99997485 99997485 1 + C T SKCM 99997483 + 99997463 99997503 41 CACCTCCCAGCCACCGTCCCCTCAAGAGCCCCCAGAACGAG CACCTCCCAGCCACCGTCCCCTTAAGAGCCCCCAGAACGAG < 41bp 0.713786139053708 0.433252646660142 0.03824526 0.02660206 prediction 0.427572278107416 Functional Loss - PILRA ENSG00000085514 CDS Human protein_coding chr7:99997483 chr7:99997485 stopgain 0.000 0 23 hm5C_associated_SNPs_86594 0 0 0 0 2 PILRA chr7:99997408 3'AG 99997408 Downstream 78bp
chr7 99997485 99997485 1 + C T SKCM 99997483 + 99997463 99997503 41 CACCTCCCAGCCACCGTCCCCTCAAGAGCCCCCAGAACGAG CACCTCCCAGCCACCGTCCCCTTAAGAGCCCCCAGAACGAG < 41bp 0.713786139053708 0.433252646660142 0.03824526 0.02660206 prediction 0.427572278107416 Functional Loss - PILRA ENSG00000085514 CDS Human protein_coding chr7:99997483 chr7:99997485 stopgain 0.000 0 23 hm5C_associated_SNPs_86594 0 0 0 0 2 PILRA chr7:99997446 3'AG 99997446 Downstream 40bp
chr20 53205279 53205279 1 + C T COAD 53205277 + 53205257 53205297 41 CCAGATGGAGTGTGTAGGAACACGGATCAATGACATCAGCC CCAGATGGAGTGTGTAGGAACATGGATCAATGACATCAGCC < 41bp 0.851654776226364 0.637868864990088 0.11353096 0.14359313 prediction 0.427571822472551 Functional Loss - DOK5 ENSG00000101134 CDS Human protein_coding chr20:53205277 chr20:53205279 nonsynonymous SNV 0.925 5 23 hm5C_associated_SNPs_86595 0 0 0 0 2 DOK5 chr20:53205226 3'AG 53205226 Downstream 54bp
chr20 53205279 53205279 1 + C T COAD 53205277 + 53205257 53205297 41 CCAGATGGAGTGTGTAGGAACACGGATCAATGACATCAGCC CCAGATGGAGTGTGTAGGAACATGGATCAATGACATCAGCC < 41bp 0.851654776226364 0.637868864990088 0.11353096 0.14359313 prediction 0.427571822472551 Functional Loss - DOK5 ENSG00000101134 CDS Human protein_coding chr20:53205277 chr20:53205279 nonsynonymous SNV 0.925 5 23 hm5C_associated_SNPs_86595 0 0 0 0 2 DOK5 chr20:53205345 5'GT 53205345 Upstream 67bp
chr3 63264201 63264201 1 + G A rs6767876 63264198 + 63264178 63264218 41 TGGTGGATGAGAAGAGCGAGCGAGGGCGAGCTATGGACCCT TGGTGGATGAGAAGAGCGAGCGAAGGCGAGCTATGGACCCT < 41bp 0.742809243167199 0.529023360576887 0.8260475 0.36189905 prediction 0.427571765180624 Functional Loss - SYNPR ENSG00000163630 UTR5 Human protein_coding chr3:63264198 chr3:63264201 . . 0 24 hm5C_associated_SNPs_86596 0 0 0 0 1 SYNPR chr3:63264227 5'GT 63264227 Upstream 27bp
chr20 19698203 19698203 1 + C T SKCM 19698201 + 19698181 19698221 41 AATAGCAGGGGGCTGATCTACTCCGTAGGCTTGCTCCTGGC AATAGCAGGGGGCTGATCTACTTCGTAGGCTTGCTCCTGGC < 41bp 0.713782987977397 0.426987982863728 0.71337014 0.41010743 prediction 0.427565975954794 Functional Loss - SLC24A3 ENSG00000185052 CDS Human protein_coding chr20:19698201 chr20:19698203 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_86597 0 0 0 0 2 SLC24A3 chr20:19698172 3'AG 19698172 Downstream 32bp
chr20 19698203 19698203 1 + C T SKCM 19698201 + 19698181 19698221 41 AATAGCAGGGGGCTGATCTACTCCGTAGGCTTGCTCCTGGC AATAGCAGGGGGCTGATCTACTTCGTAGGCTTGCTCCTGGC < 41bp 0.713782987977397 0.426987982863728 0.71337014 0.41010743 prediction 0.427565975954794 Functional Loss - SLC24A3 ENSG00000185052 CDS Human protein_coding chr20:19698201 chr20:19698203 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_86597 0 0 0 0 2 SLC24A3 chr20:19698237 5'GT 19698237 Upstream 35bp
chr16 71411638 71411638 1 + C T STAD 71411635 + 71411615 71411655 41 AGGCAGCACGTGGGCTCCAGCGCCGAGTTTATGGAGGTGAG AGGCAGCACGTGGGCTCCAGCGCTGAGTTTATGGAGGTGAG < 41bp 0.748771510821114 0.534989531906955 0.4172818 0.26833326 prediction 0.427563957828319 Functional Loss - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71411635 chr16:71411638 synonymous SNV . 0 24 hm5C_associated_SNPs_86599 0 0 0 0 2 CALB2 chr16:71411570 3'AG 71411570 Downstream 69bp
chr16 71411638 71411638 1 + C T STAD 71411635 + 71411615 71411655 41 AGGCAGCACGTGGGCTCCAGCGCCGAGTTTATGGAGGTGAG AGGCAGCACGTGGGCTCCAGCGCTGAGTTTATGGAGGTGAG < 41bp 0.748771510821114 0.534989531906955 0.4172818 0.26833326 prediction 0.427563957828319 Functional Loss - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71411635 chr16:71411638 synonymous SNV . 0 24 hm5C_associated_SNPs_86599 0 0 0 0 2 CALB2 chr16:71411650 5'GT 71411650 Upstream 13bp
chr16 1823715 1823715 1 + A C COAD 1823711 + 1823691 1823731 41 CTCCCCCGGTCCCAGCCATCCTGGAAGACGCCGGTGCCGAC CTCCCCCGGTCCCAGCCATCCTGGCAGACGCCGGTGCCGAC < 41bp 0.933613698224518 0.719833755951748 0.5605933 0.43619516 prediction 0.427559884545539 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1823711 chr16:1823715 nonsynonymous SNV 0.785 3 25 hm5C_associated_SNPs_86601 0 0 1 0 1 EME2 chr16:1823706 3'AG 1823706 Downstream 10bp
chr12 122481904 122481904 1 + C T rs76573037 122481901 + 122481881 122481921 41 TCGGCTGTGCCCAGCGACGGCACCGAGGCCAAGGTGGATGA TCGGCTGTGCCCAGCGACGGCACTGAGGCCAAGGTGGATGA < 41bp 0.756710716246646 0.542933825404838 0.20876572 0.13265386 prediction 0.427553781683617 Functional Loss - BCL7A ENSG00000110987 CDS Human protein_coding chr12:122481901 chr12:122481904 synonymous SNV . 0 24 hm5C_associated_SNPs_86603 0 0 1 0 1 BCL7A chr12:122481959 5'GT 122481959 Upstream 56bp
chr8 69104701 69104701 1 + G A rs116570374 69104698 + 69104678 69104718 41 GTTGGACTGCTGTCAGTTTCCTCGGAGCTGTGCAACAGGCT GTTGGACTGCTGTCAGTTTCCTCAGAGCTGTGCAACAGGCT < 41bp 0.781892704350853 0.568115836913267 0.1614038 0.058160156 prediction 0.427553734875172 Functional Loss - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69104698 chr8:69104701 synonymous SNV . 0 24 hm5C_associated_SNPs_86604 0 0 0 0 1 PREX2 chr8:69104760 5'GT 69104760 Upstream 60bp
chr21 43864670 43864670 1 + G A UCEC 43864667 + 43864647 43864687 41 GTGTCATCCTAATTGTGAGTCACGGCTCCACTCTGGACTCC GTGTCATCCTAATTGTGAGTCACAGCTCCACTCTGGACTCC < 41bp 0.71377403683664 0.463305879922843 0.14140388 0.16369799 prediction 0.42754807367328 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43864667 chr21:43864670 nonsynonymous SNV 0.721 0 24 hm5C_associated_SNPs_86606 0 0 0 0 2 UBASH3A chr21:43864644 3'AG 43864644 Downstream 27bp
chr21 43864670 43864670 1 + G A UCEC 43864667 + 43864647 43864687 41 GTGTCATCCTAATTGTGAGTCACGGCTCCACTCTGGACTCC GTGTCATCCTAATTGTGAGTCACAGCTCCACTCTGGACTCC < 41bp 0.71377403683664 0.463305879922843 0.14140388 0.16369799 prediction 0.42754807367328 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43864667 chr21:43864670 nonsynonymous SNV 0.721 0 24 hm5C_associated_SNPs_86606 0 0 0 0 2 UBASH3A chr21:43864753 5'GT 43864753 Upstream 84bp
chr16 89704484 89704484 1 + G A ESCA 89704481 + 89704461 89704501 41 CCAGCAACCTCACACAGGCTCCCGAGGAGGAGCCCATCCCG CCAGCAACCTCACACAGGCTCCCAAGGAGGAGCCCATCCCG < 41bp 0.815856280761672 0.602082392305385 0.15325466 0.03505692 prediction 0.427547776912574 Functional Loss - DPEP1 ENSG00000015413 CDS Human protein_coding chr16:89704481 chr16:89704484 nonsynonymous SNV 0.132 0 24 hm5C_associated_SNPs_86607 0 0 1 0 1 DPEP1 chr16:89704460 3'AG 89704460 Downstream 25bp
chr7 18630021 18630021 1 + G T LUAD 18630019 + 18629999 18630039 41 TCCTAGAAAAGGAGCAGAAACTGGAGCAGCAGAGGCAAGAA TCCTAGAAAAGGAGCAGAAACTTGAGCAGCAGAGGCAAGAA < 41bp 0.82453461093174 0.610762107660001 0.82957315 0.4274607 prediction 0.427545006543479 Functional Loss - HDAC9 ENSG00000048052 CDS Human protein_coding chr7:18630019 chr7:18630021 synonymous SNV . 0 23 hm5C_associated_SNPs_86609 0 0 0 0 2 HDAC9 chr7:18629959 3'AG 18629959 Downstream 63bp
chr7 18630021 18630021 1 + G T LUAD 18630019 + 18629999 18630039 41 TCCTAGAAAAGGAGCAGAAACTGGAGCAGCAGAGGCAAGAA TCCTAGAAAAGGAGCAGAAACTTGAGCAGCAGAGGCAAGAA < 41bp 0.82453461093174 0.610762107660001 0.82957315 0.4274607 prediction 0.427545006543479 Functional Loss - HDAC9 ENSG00000048052 CDS Human protein_coding chr7:18630019 chr7:18630021 synonymous SNV . 0 23 hm5C_associated_SNPs_86609 0 0 0 0 2 HDAC9 chr7:18630109 5'GT 18630109 Upstream 89bp
chr2 7160716 7160716 1 + C T SKCM 7160713 + 7160693 7160733 41 CAGCCAGTGCAGTGCAAAGCCTGCCGTATGGAATTCTGCTC CAGCCAGTGCAGTGCAAAGCCTGTCGTATGGAATTCTGCTC < 41bp 0.722431479183433 0.508661552710053 0.23415238 0.15810755 prediction 0.427539852946759 Functional Loss - RNF144A ENSG00000151692 CDS Human protein_coding chr2:7160713 chr2:7160716 synonymous SNV . 0 24 hm5C_associated_SNPs_86610 0 0 0 0 1 RNF144A chr2:7160811 5'GT 7160811 Upstream 96bp
chr3 195955025 195955025 1 + G A SKCM 195955022 + 195955002 195955042 41 TTTTACCTGCTGATGCTGGTCATGGTGGAAGGCTTTGGGGG TTTTACCTGCTGATGCTGGTCATAGTGGAAGGCTTTGGGGG < 41bp 0.713769583062675 0.459521320025788 0.47451475 0.53565156 prediction 0.42753916612535 Functional Loss - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195955022 chr3:195955025 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_86612 0 0 0 0 1 SLC51A chr3:195954986 3'AG 195954986 Downstream 40bp
chr2 219500622 219500622 1 + C T UCEC 219500619 + 219500599 219500639 41 CTTTGGCGTTCGTCTAGACACAGCACGGCAGGAGACCAACT CTTTGGCGTTCGTCTAGACACAGTACGGCAGGAGACCAACT < 41bp 0.750525792777489 0.536756273066987 0.13223499 0.3131758 prediction 0.427539039421004 Functional Loss - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219500619 chr2:219500622 nonsynonymous SNV 0.071 1 24 hm5C_associated_SNPs_86613 0 0 0 0 1 PLCD4 chr2:219500654 5'GT 219500654 Upstream 33bp
chr12 110574623 110574623 1 + C T SARC 110574620 + 110574600 110574640 41 GATTGCAAAGAGTACAAAACCAGCTGAAAAGCATGCGCCAA GATTGCAAAGAGTACAAAACCAGTTGAAAAGCATGCGCCAA < 41bp 0.72220432304513 0.508437935645299 0.9160356 0.90897226 prediction 0.427532774799662 Functional Loss - IFT81 ENSG00000122970 CDS Human protein_coding chr12:110574620 chr12:110574623 synonymous SNV . 0 24 hm5C_associated_SNPs_86615 0 0 1 0 2 IFT81 chr12:110574581 3'AG 110574581 Downstream 43bp
chr12 110574623 110574623 1 + C T SARC 110574620 + 110574600 110574640 41 GATTGCAAAGAGTACAAAACCAGCTGAAAAGCATGCGCCAA GATTGCAAAGAGTACAAAACCAGTTGAAAAGCATGCGCCAA < 41bp 0.72220432304513 0.508437935645299 0.9160356 0.90897226 prediction 0.427532774799662 Functional Loss - IFT81 ENSG00000122970 CDS Human protein_coding chr12:110574620 chr12:110574623 synonymous SNV . 0 24 hm5C_associated_SNPs_86615 0 0 1 0 2 IFT81 chr12:110574665 5'GT 110574665 Upstream 43bp
chr14 56755316 56755316 1 + C T UCEC 56755313 + 56755293 56755333 41 CCTTACACAGCACGGATATTCGCCGCCGGATTTGACTCTTC CCTTACACAGCACGGATATTCGCTGCCGGATTTGACTCTTC < 41bp 0.746433923544691 0.532669667186495 0.26207584 0.20308766 prediction 0.427528512716391 Functional Loss - PELI2 ENSG00000139946 CDS Human protein_coding chr14:56755313 chr14:56755316 synonymous SNV . 0 24 hm5C_associated_SNPs_86616 0 0 1 0 1 PELI2 chr14:56755352 5'GT 56755352 Upstream 37bp
chr20 9319618 9319618 1 + C T LGG 9319615 + 9319595 9319635 41 GAAGGGCGGATAGTTTGTGTCTGCAGTGGCACAGATCTAGT GAAGGGCGGATAGTTTGTGTCTGTAGTGGCACAGATCTAGT < 41bp 0.738945057437332 0.525188312627167 0.80874586 0.16034162 prediction 0.42751348962033 Functional Loss - PLCB4 ENSG00000101333 CDS Human protein_coding chr20:9319615 chr20:9319618 synonymous SNV . 0 24 hm5C_associated_SNPs_86620 0 0 1 0 2 PLCB4 chr20:9319541 3'AG 9319541 Downstream 78bp
chr20 9319618 9319618 1 + C T LGG 9319615 + 9319595 9319635 41 GAAGGGCGGATAGTTTGTGTCTGCAGTGGCACAGATCTAGT GAAGGGCGGATAGTTTGTGTCTGTAGTGGCACAGATCTAGT < 41bp 0.738945057437332 0.525188312627167 0.80874586 0.16034162 prediction 0.42751348962033 Functional Loss - PLCB4 ENSG00000101333 CDS Human protein_coding chr20:9319615 chr20:9319618 synonymous SNV . 0 24 hm5C_associated_SNPs_86620 0 0 1 0 2 PLCB4 chr20:9319684 5'GT 9319684 Upstream 67bp
chr6 155485680 155485680 1 + C T THYM 155485677 + 155485657 155485697 41 CTTGCAGCCGCCAGCCGCCCCTCCAAGCTGGCCCTCGGCAG CTTGCAGCCGCCAGCCGCCCCTCTAAGCTGGCCCTCGGCAG < 41bp 0.771174836919465 0.557420959269702 0.9623661 0.93199474 prediction 0.427507755299525 Functional Loss - TIAM2 ENSG00000146426 CDS Human protein_coding chr6:155485677 chr6:155485680 synonymous SNV . 0 24 hm5C_associated_SNPs_86623 0 0 0 0 1 TIAM2 chr6:155485734 5'GT 155485734 Upstream 55bp
chr2 241631677 241631677 1 + G A COAD 241631674 + 241631654 241631694 41 TGCCTGGCACGCTGTTGAAGCTGGCGGCACAGGGGCTGGGC TGCCTGGCACGCTGTTGAAGCTGACGGCACAGGGGCTGGGC < 41bp 0.71375207610249 0.45882156899682 0.6220863 0.4035844 prediction 0.42750415220498 Functional Loss - AQP12A ENSG00000184945 CDS Human protein_coding chr2:241631674 chr2:241631677 nonsynonymous SNV 0.444 0 24 hm5C_associated_SNPs_86626 0 0 0 0 1 AQP12A chr2:241631629 3'AG 241631629 Downstream 49bp
chr16 5057421 5057421 1 + G A rs139013540 5057418 + 5057398 5057438 41 ACAGAAGAGGAGCAGGAGCACACGGACCAGCTGTGGCAGTG ACAGAAGAGGAGCAGGAGCACACAGACCAGCTGTGGCAGTG < 41bp 0.80186452233283 0.588112899430107 0.70999736 0.6885314 prediction 0.427503245805445 Functional Loss - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5057418 chr16:5057421 synonymous SNV . 0 24 hm5C_associated_SNPs_86627 0 0 0 0 1 SEC14L5 chr16:5057487 5'GT 5057487 Upstream 67bp
chrX 86924367 86924367 1 + G T UCEC 86924365 + 86924345 86924385 41 TACAAAACTTCTATACCACACAGAAGCTGAAAGAGACTCTG TACAAAACTTCTATACCACACATAAGCTGAAAGAGACTCTG < 41bp 0.713749240798187 0.427942163842916 0.2233637 0.040706813 prediction 0.427498481596375 Functional Loss - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86924365 chrX:86924367 nonsynonymous SNV 0.021 0 23 hm5C_associated_SNPs_86628 0 0 0 0 1 KLHL4 chrX:86924329 3'AG 86924329 Downstream 39bp
chr17 2923826 2923826 1 + G T CESC 2923822 + 2923802 2923842 41 AGTCACGGAGTCCCATCAAGCGACGCTCGGGGCTCTTCCCC AGTCACGGAGTCCCATCAAGCGACTCTCGGGGCTCTTCCCC < 41bp 0.713748098225162 0.498946156834249 0.9119235 0.70248985 prediction 0.427496196450325 Functional Loss - RAP1GAP2 ENSG00000132359 CDS Human protein_coding chr17:2923822 chr17:2923826 nonsynonymous SNV 0.983 4 25 hm5C_associated_SNPs_86629 0 0 1 0 2 RAP1GAP2 chr17:2923771 3'AG 2923771 Downstream 56bp
chr17 2923826 2923826 1 + G T CESC 2923822 + 2923802 2923842 41 AGTCACGGAGTCCCATCAAGCGACGCTCGGGGCTCTTCCCC AGTCACGGAGTCCCATCAAGCGACTCTCGGGGCTCTTCCCC < 41bp 0.713748098225162 0.498946156834249 0.9119235 0.70248985 prediction 0.427496196450325 Functional Loss - RAP1GAP2 ENSG00000132359 CDS Human protein_coding chr17:2923822 chr17:2923826 nonsynonymous SNV 0.983 4 25 hm5C_associated_SNPs_86629 0 0 1 0 2 RAP1GAP2 chr17:2923889 5'GT 2923889 Upstream 64bp
chr16 67235956 67235956 1 + G A LUAD 67235953 + 67235933 67235973 41 GGACAACATGTTGTACTTCTCCAGAAACGCGCCCAGCGCGT GGACAACATGTTGTACTTCTCCAAAAACGCGCCCAGCGCGT < 41bp 0.814793095203007 0.601046853391668 0.3219239 0.035903335 prediction 0.427492483622679 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67235953 chr16:67235956 nonsynonymous SNV 0.957 0 24 hm5C_associated_SNPs_86631 0 0 1 0 2 ELMO3 chr16:67235880 3'AG 67235880 Downstream 77bp
chr16 67235956 67235956 1 + G A LUAD 67235953 + 67235933 67235973 41 GGACAACATGTTGTACTTCTCCAGAAACGCGCCCAGCGCGT GGACAACATGTTGTACTTCTCCAAAAACGCGCCCAGCGCGT < 41bp 0.814793095203007 0.601046853391668 0.3219239 0.035903335 prediction 0.427492483622679 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67235953 chr16:67235956 nonsynonymous SNV 0.957 0 24 hm5C_associated_SNPs_86631 0 0 1 0 2 ELMO3 chr16:67235981 5'GT 67235981 Upstream 26bp
chr20 36305431 36305431 1 + C T rs563865598 36305429 + 36305409 36305449 41 CAGCCCATCTTCAGGTCTACCGCGGCGGATGAAGCCTCACG CAGCCCATCTTCAGGTCTACCGTGGCGGATGAAGCCTCACG < 41bp 0.730187412054884 0.516441200176851 0.83292425 0.5446682 prediction 0.427492423756066 Functional Loss - LOC100287792 ENSG00000204117 ncRNA_exonic Human lincRNA chr20:36305429 chr20:36305431 . . 0 23 hm5C_associated_SNPs_86632 0 0 0 0 1 LOC100287792 chr20:36305488 5'GT 36305488 Upstream 58bp
chr11 75495789 75495789 1 + T C UCEC 75495788 + 75495768 75495808 41 GGGTCCTGTCCTTCCTTGTACTGGGTAAGCTGGGCCTTAGA GGGTCCTGTCCTTCCTTGTACCGGGTAAGCTGGGCCTTAGA < 41bp 0.713745190685065 0.47691510390793 0.8738711 0.90310013 prediction 0.427490381370129 Functional Loss - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75495788 chr11:75495789 nonsynonymous SNV 0.871 2 22 hm5C_associated_SNPs_86633 0 0 1 0 1 DGAT2 chr11:75495791 5'GT 75495791 Upstream 3bp
chr1 60314051 60314051 1 + G A SKCM 60314048 + 60314028 60314068 41 AGATATATCGTCAGAAGCTACAAGATCTGAATGACCTTCGC AGATATATCGTCAGAAGCTACAAAATCTGAATGACCTTCGC < 41bp 0.713741433482138 0.486741072877542 0.8558694 0.7396437 prediction 0.427482866964277 Functional Loss - HOOK1 ENSG00000134709 CDS Human protein_coding chr1:60314048 chr1:60314051 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_86634 0 0 1 0 1 HOOK1 chr1:60313987 3'AG 60313987 Downstream 65bp
chr1 78546507 78546507 1 + C T UCEC 78546505 + 78546485 78546525 41 TCTGAGGATTCACTTGGTCTCACCATTACAGATAATGGTGT TCTGAGGATTCACTTGGTCTCATCATTACAGATAATGGTGT < 41bp 0.71373742219354 0.423976649790093 0.14089787 0.11770666 prediction 0.427474844387081 Functional Loss - GIPC2 ENSG00000137960 CDS Human protein_coding chr1:78546505 chr1:78546507 nonsynonymous SNV 0.533 1 23 hm5C_associated_SNPs_86637 0 0 1 0 1 GIPC2 chr1:78546544 5'GT 78546544 Upstream 38bp
chr12 113873198 113873198 1 + G A UCEC 113873195 + 113873175 113873215 41 TGAGGACCCCACCAGGTGCCCTGGTGCTGGCAGTTGGGGGT TGAGGACCCCACCAGGTGCCCTGATGCTGGCAGTTGGGGGT < 41bp 0.817267444188505 0.603531751093522 0.64087033 0.36448884 prediction 0.427471386189965 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113873195 chr12:113873198 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_86639 0 0 1 0 1 SDSL chr12:113873134 3'AG 113873134 Downstream 65bp
chr18 43307330 43307330 1 + C T UCEC 43307328 + 43307308 43307348 41 AACTAAAGCTGGTGACGCAGCGCGCAGAGGCATCGCCCGGC AACTAAAGCTGGTGACGCAGCGTGCAGAGGCATCGCCCGGC < 41bp 0.78999330095347 0.576260485822879 0.12395167 0.22109503 prediction 0.427465630261181 Functional Loss - SLC14A1 ENSG00000141469 CDS Human protein_coding chr18:43307328 chr18:43307330 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_86641 0 0 0 0 2 SLC14A1 chr18:43307297 3'AG 43307297 Downstream 34bp
chr18 43307330 43307330 1 + C T UCEC 43307328 + 43307308 43307348 41 AACTAAAGCTGGTGACGCAGCGCGCAGAGGCATCGCCCGGC AACTAAAGCTGGTGACGCAGCGTGCAGAGGCATCGCCCGGC < 41bp 0.78999330095347 0.576260485822879 0.12395167 0.22109503 prediction 0.427465630261181 Functional Loss - SLC14A1 ENSG00000141469 CDS Human protein_coding chr18:43307328 chr18:43307330 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_86641 0 0 0 0 2 SLC14A1 chr18:43307383 5'GT 43307383 Upstream 54bp
chr2 234680914 234680914 1 + G A LUSC 234680911 + 234680891 234680931 41 ACTGTCTTTGTGTTTAGTTACAAGGAGAACATCATGCGCCT ACTGTCTTTGTGTTTAGTTACAAAGAGAACATCATGCGCCT < 41bp 0.784986232382491 0.571257050288261 0.5479207 0.124207914 prediction 0.42745836418846 Functional Loss - UGT1A1;UGT1A10;UGT1A3;UGT1A4;UGT1A5;UGT1A6;UGT1A7;UGT1A8;UGT1A9 ENSG00000167165;ENSG00000240224;ENSG00000241119;ENSG00000241635;ENSG00000242366;ENSG00000242515;ENSG00000243135;ENSG00000244122;ENSG00000244474 CDS Human other chr2:234680911 chr2:234680914 synonymous SNV . 0 24 hm5C_associated_SNPs_86643 0 0 0 0 1 UGT1A1;UGT1A10;UGT1A3;UGT1A4;UGT1A5;UGT1A6;UGT1A7;UGT1A8;UGT1A9 chr2:234680908 3'AG 234680908 Downstream 7bp
chr2 228777057 228777057 1 + T C LIHC 228777056 + 228777036 228777076 41 CCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCGCCCGAG CCTCCCAGGTTCAAGCGATTCCCCTGCCTCAGCCGCCCGAG < 41bp 0.713725340985979 0.469966914025177 0.07515907 0.06107545 prediction 0.427450681971958 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228777056 chr2:228777057 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_86644 0 0 0 0 1 DAW1 chr2:228776970 3'AG 228776970 Downstream 88bp
chr17 61889335 61889335 1 + G A STAD 61889332 + 61889312 61889352 41 GATTGTGGAGATTCTCCATTCTGGACCTAGTAAATGGAACT GATTGTGGAGATTCTCCATTCTGAACCTAGTAAATGGAACT < 41bp 0.776424912260606 0.562701142079226 0.15330291 0.11327726 prediction 0.427447540362759 Functional Loss - DDX42 ENSG00000198231 CDS Human protein_coding chr17:61889332 chr17:61889335 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_86646 0 0 1 0 1 DDX42 chr17:61889292 3'AG 61889292 Downstream 44bp
chr18 909505 909505 1 + G C STAD 909501 + 909481 909521 41 GAGCCGCTCTCCAAGCGCCACTCGGACGGGATCTTCACGGA GAGCCGCTCTCCAAGCGCCACTCGCACGGGATCTTCACGGA < 41bp 0.858791336780978 0.645073245858801 0.078251034 0.015574276 prediction 0.427436181844354 Functional Loss - ADCYAP1 ENSG00000141433 CDS Human protein_coding chr18:909501 chr18:909505 nonsynonymous SNV 0.959 3 25 hm5C_associated_SNPs_86647 0 0 0 0 1 ADCYAP1 chr18:909447 3'AG 909447 Downstream 59bp
chr19 2873517 2873517 1 + G A SKCM 2873514 + 2873494 2873534 41 GACACAGTGGTCTTTGAAGACGTGGTTGTGGATTTCACGCT GACACAGTGGTCTTTGAAGACGTAGTTGTGGATTTCACGCT < 41bp 0.713718063453389 0.474463962568565 0.33379644 0.15960473 prediction 0.427436126906777 Functional Loss - ZNF556 ENSG00000172000 CDS Human protein_coding chr19:2873514 chr19:2873517 synonymous SNV . 0 24 hm5C_associated_SNPs_86648 0 0 1 0 1 ZNF556 chr19:2873494 3'AG 2873494 Downstream 24bp
chr11 8118899 8118899 1 + G A COAD 8118896 + 8118876 8118916 41 CACCATCAAATGCCGCATCACTCGGGACAAGAAAGGGATGG CACCATCAAATGCCGCATCACTCAGGACAAGAAAGGGATGG < 41bp 0.713713211236398 0.471445018799763 0.17002618 0.09837389 prediction 0.427426422472796 Functional Loss - TUB ENSG00000166402 CDS Human protein_coding chr11:8118896 chr11:8118899 nonsynonymous SNV 0.957 5 24 hm5C_associated_SNPs_86653 0 0 0 0 1 TUB chr11:8118972 5'GT 8118972 Upstream 74bp
chr11 8118898 8118898 1 + C T COAD 8118896 + 8118876 8118916 41 CACCATCAAATGCCGCATCACTCGGGACAAGAAAGGGATGG CACCATCAAATGCCGCATCACTTGGGACAAGAAAGGGATGG < 41bp 0.713713211236398 0.42141077137908 0.17002618 0.10038331 prediction 0.427426422472796 Functional Loss - TUB ENSG00000166402 CDS Human protein_coding chr11:8118896 chr11:8118898 nonsynonymous SNV 0.888 5 23 hm5C_associated_SNPs_86654 0 0 0 0 1 TUB chr11:8118972 5'GT 8118972 Upstream 75bp
chr12 13229028 13229028 1 + C T SKCM 13229025 + 13229005 13229045 41 CTCCTGCATCCTGCGTTCCCCTCCATCCTTCTGGATCTGGC CTCCTGCATCCTGCGTTCCCCTCTATCCTTCTGGATCTGGC < 41bp 0.71370784055405 0.479448048579672 0.9494296 0.65043 prediction 0.4274156811081 Functional Loss - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13229025 chr12:13229028 synonymous SNV . 0 24 hm5C_associated_SNPs_86658 0 0 0 0 1 FAM234B chr12:13228960 3'AG 13228960 Downstream 69bp
chr2 202082378 202082378 1 + G A SKCM 202082375 + 202082355 202082395 41 TGAGTCGAAGAGTGGACAAACAGGGAACAAAGAAACAGATG TGAGTCGAAGAGTGGACAAACAGAGAACAAAGAAACAGATG < 41bp 0.713703261690295 0.492917811476602 0.90198827 0.8938376 prediction 0.427406523380589 Functional Loss - CASP10 ENSG00000003400 CDS Human protein_coding chr2:202082375 chr2:202082378 nonsynonymous SNV 0.019 3 24 hm5C_associated_SNPs_86660 0 0 0 0 1 CASP10 chr2:202082311 3'AG 202082311 Downstream 68bp
chr7 63537695 63537695 1 + G A ESCA 63537692 + 63537672 63537712 41 CTGCAGAGATATTGCTGGAGCACGACATAAACGATTCATTT CTGCAGAGATATTGCTGGAGCACAACATAAACGATTCATTT < 41bp 0.770677268866288 0.556974098478215 0.046295166 0.05466208 prediction 0.427406340776145 Functional Loss - ZNF727 ENSG00000257482 CDS Human other chr7:63537692 chr7:63537695 nonsynonymous SNV 0.013 0 24 hm5C_associated_SNPs_86661 0 0 0 0 1 ZNF727 chr7:63537654 3'AG 63537654 Downstream 42bp
chr1 206626644 206626644 1 + C T COAD 206626641 + 206626621 206626661 41 GAGCATCCCTGCTGCTTTACCAGCGGGCTTCCGACGACTGG GAGCATCCCTGCTGCTTTACCAGTGGGCTTCCGACGACTGG < 41bp 0.73498952191594 0.521287924827674 0.895004 0.8177393 prediction 0.427403194176531 Functional Loss - SRGAP2 ENSG00000163486 CDS Human other chr1:206626641 chr1:206626644 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_86662 0 0 1 0 2 SRGAP2 chr1:206626546 3'AG 206626546 Downstream 99bp
chr1 206626644 206626644 1 + C T COAD 206626641 + 206626621 206626661 41 GAGCATCCCTGCTGCTTTACCAGCGGGCTTCCGACGACTGG GAGCATCCCTGCTGCTTTACCAGTGGGCTTCCGACGACTGG < 41bp 0.73498952191594 0.521287924827674 0.895004 0.8177393 prediction 0.427403194176531 Functional Loss - SRGAP2 ENSG00000163486 CDS Human other chr1:206626641 chr1:206626644 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_86662 0 0 1 0 2 SRGAP2 chr1:206626726 5'GT 206626726 Upstream 83bp
chr1 156348204 156348204 1 + G A rs113186314 156348201 + 156348181 156348221 41 GCCATGATTGGTGAGGCCTTCGAGGTGCGGTAGCAGGGCAG GCCATGATTGGTGAGGCCTTCGAAGTGCGGTAGCAGGGCAG < 41bp 0.809657209133179 0.595956646737356 0.90678275 0.6545037 prediction 0.427401124791646 Functional Loss - RHBG ENSG00000132677 intronic Human protein_coding chr1:156348201 chr1:156348204 . . 0 24 hm5C_associated_SNPs_86663 0 0 1 1 1 RHBG chr1:156348204 5'GT 156348204 Upstream 1bp
chr16 19693642 19693642 1 + C T UCEC 19693639 + 19693619 19693659 41 GACAACAGCGATGAGAAAATCCGCATCTACACCTGCGTCCT GACAACAGCGATGAGAAAATCCGTATCTACACCTGCGTCCT < 41bp 0.748769477959094 0.535078551379014 0.22689316 0.27640313 prediction 0.42738185316016 Functional Loss - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19693639 chr16:19693642 synonymous SNV . 0 24 hm5C_associated_SNPs_86668 0 0 0 0 2 C16orf62 chr16:19693547 3'AG 19693547 Downstream 96bp
chr16 19693642 19693642 1 + C T UCEC 19693639 + 19693619 19693659 41 GACAACAGCGATGAGAAAATCCGCATCTACACCTGCGTCCT GACAACAGCGATGAGAAAATCCGTATCTACACCTGCGTCCT < 41bp 0.748769477959094 0.535078551379014 0.22689316 0.27640313 prediction 0.42738185316016 Functional Loss - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19693639 chr16:19693642 synonymous SNV . 0 24 hm5C_associated_SNPs_86668 0 0 0 0 2 C16orf62 chr16:19693712 5'GT 19693712 Upstream 71bp
chr20 37529251 37529251 1 + G A rs34142152 37529248 + 37529228 37529268 41 GCCGACTTGCTTGCTGTCAACTCGGATGGGAACATGCCATA GCCGACTTGCTTGCTGTCAACTCAGATGGGAACATGCCATA < 41bp 0.799936329384109 0.586247812726382 0.6385897 0.36883834 prediction 0.427377033315452 Functional Loss - PPP1R16B ENSG00000101445 CDS Human protein_coding chr20:37529248 chr20:37529251 synonymous SNV . 0 24 hm5C_associated_SNPs_86671 0 0 0 0 1 PPP1R16B chr20:37529224 3'AG 37529224 Downstream 28bp
chr2 74154136 74154136 1 + C T ESCA 74154134 + 74154114 74154154 41 TTTCCTCCTCCAGAGGCCTGCACGCGGGGCGCGGGCCCCGA TTTCCTCCTCCAGAGGCCTGCATGCGGGGCGCGGGCCCCGA < 41bp 0.787084630111343 0.57339640765453 0.88486135 0.83081037 prediction 0.427376444913625 Functional Loss - DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154134 chr2:74154136 synonymous SNV . 0 23 hm5C_associated_SNPs_86672 0 0 1 0 1 DGUOK chr2:74154179 5'GT 74154179 Upstream 44bp
chr12 56117674 56117674 1 + G A LUAD 56117671 + 56117651 56117691 41 CGCTCTGCCCCGACTCTAGGCGGGATGTAGCTCATTTTGGG CGCTCTGCCCCGACTCTAGGCGGAATGTAGCTCATTTTGGG < 41bp 0.798184842441861 0.584497495889788 0.6067227 0.37454617 prediction 0.427374693104145 Functional Loss - RDH5 ENSG00000135437 CDS Human protein_coding chr12:56117671 chr12:56117674 nonsynonymous SNV 0.786 2 24 hm5C_associated_SNPs_86673 0 0 1 0 1 RDH5 chr12:56117670 3'AG 56117670 Downstream 5bp
chr19 55107681 55107681 1 + C T CESC 55107679 + 55107659 55107699 41 TTCCGTGGCAGACCCTTCATCTCGGTGCATCCGGGCCCCAC TTCCGTGGCAGACCCTTCATCTTGGTGCATCCGGGCCCCAC < 41bp 0.840419029500401 0.62673508652454 0.6316134 0.2611907 prediction 0.427367885951722 Functional Loss - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55107679 chr19:55107681 nonsynonymous SNV 0.009 0 23 hm5C_associated_SNPs_86676 0 0 0 0 1 LILRA1 chr19:55107654 3'AG 55107654 Downstream 28bp
chr8 97892115 97892115 1 + G A UCEC 97892112 + 97892092 97892132 41 GGAAGATGCAGAAATGATGTCAAGAATGGCTTCTCATGGGA GGAAGATGCAGAAATGATGTCAAAAATGGCTTCTCATGGGA < 41bp 0.777523297011343 0.563842372872943 0.12675634 0.08910325 prediction 0.4273618482768 Functional Loss - CPQ ENSG00000104324 CDS Human protein_coding chr8:97892112 chr8:97892115 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_86681 0 0 1 0 1 CPQ chr8:97892026 3'AG 97892026 Downstream 90bp
chr19 50957427 50957427 1 + C T UCEC 50957424 + 50957404 50957444 41 AGGACGTGGCTTCCATCTTCCTGCAAGTTGTAGGTGAGCAG AGGACGTGGCTTCCATCTTCCTGTAAGTTGTAGGTGAGCAG < 41bp 0.742247327750386 0.528570800119743 0.071938634 0.06913149 prediction 0.427353055261287 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957424 chr19:50957427 stopgain 0.988 0 24 hm5C_associated_SNPs_86684 0 0 0 0 1 MYBPC2 chr19:50957436 5'GT 50957436 Upstream 10bp
chr1 196799682 196799682 1 + T C LUAD 196799681 + 196799661 196799701 41 TATTGACAATGGGGACATTACTTCATTCCCGTTGTCAGTAT TATTGACAATGGGGACATTACCTCATTCCCGTTGTCAGTAT < 41bp 0.835714603220991 0.622042464936066 0.18509811 0.15054506 prediction 0.427344276569851 Functional Loss - CFHR1 ENSG00000244414 CDS Human protein_coding chr1:196799681 chr1:196799682 synonymous SNV . 0 22 hm5C_associated_SNPs_86685 0 0 0 0 1 CFHR1 chr1:196799630 3'AG 196799630 Downstream 53bp
chr14 20923818 20923818 1 + G C BRCA 20923814 + 20923794 20923834 41 TCGTAACGGGAATGCCGAAGCGTGGGAAAAAGGGAGCGGTG TCGTAACGGGAATGCCGAAGCGTGCGAAAAAGGGAGCGGTG < 41bp 0.867036258730404 0.653367724268475 0.5970127 0.26005834 prediction 0.42733706892386 Functional Loss - APEX1 ENSG00000100823 CDS Human protein_coding chr14:20923814 chr14:20923818 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_86690 0 0 1 0 2 APEX1 chr14:20923737 3'AG 20923737 Downstream 82bp
chr14 20923818 20923818 1 + G C BRCA 20923814 + 20923794 20923834 41 TCGTAACGGGAATGCCGAAGCGTGGGAAAAAGGGAGCGGTG TCGTAACGGGAATGCCGAAGCGTGCGAAAAAGGGAGCGGTG < 41bp 0.867036258730404 0.653367724268475 0.5970127 0.26005834 prediction 0.42733706892386 Functional Loss - APEX1 ENSG00000100823 CDS Human protein_coding chr14:20923814 chr14:20923818 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_86690 0 0 1 0 2 APEX1 chr14:20923862 5'GT 20923862 Upstream 45bp
chr12 6883790 6883790 1 + G T SARC 6883786 + 6883766 6883806 41 GCCAGCCCCCCAGGATCTCTCAGAGCCTCCGACTGGGTCAT GCCAGCCCCCCAGGATCTCTCAGATCCTCCGACTGGGTCAT < 41bp 0.719633704885053 0.505967244956103 0.9391488 0.8930172 prediction 0.4273329198579 Functional Loss - LAG3 ENSG00000089692 CDS Human protein_coding chr12:6883786 chr12:6883790 nonsynonymous SNV 0.011 0 25 hm5C_associated_SNPs_86692 0 0 0 0 1 LAG3 chr12:6883761 3'AG 6883761 Downstream 30bp
chr3 119530564 119530564 1 + G A SARC 119530561 + 119530541 119530581 41 GACACTACCTTCTCCCATTTCAAGAATTTCCGGGTAGGAGG GACACTACCTTCTCCCATTTCAAAAATTTCCGGGTAGGAGG < 41bp 0.797083306228179 0.583423194912473 0.23109543 0.061713845 prediction 0.427320222631412 Functional Loss - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119530561 chr3:119530564 synonymous SNV . 0 24 hm5C_associated_SNPs_86696 0 0 1 0 1 NR1I2 chr3:119530573 5'GT 119530573 Upstream 10bp
chr8 42019858 42019858 1 + C T STAD 42019855 + 42019835 42019875 41 AGCTGTCAGTGGTGCCTTGGCGACGGACTGGGGTGAAATAT AGCTGTCAGTGGTGCCTTGGCGATGGACTGGGGTGAAATAT < 41bp 0.740036184166828 0.526382120855233 0.5876157 0.3618083 prediction 0.42730812662319 Functional Loss - AP3M2 ENSG00000070718 CDS Human protein_coding chr8:42019855 chr8:42019858 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_86700 0 0 1 0 2 AP3M2 chr8:42019799 3'AG 42019799 Downstream 60bp
chr8 42019858 42019858 1 + C T STAD 42019855 + 42019835 42019875 41 AGCTGTCAGTGGTGCCTTGGCGACGGACTGGGGTGAAATAT AGCTGTCAGTGGTGCCTTGGCGATGGACTGGGGTGAAATAT < 41bp 0.740036184166828 0.526382120855233 0.5876157 0.3618083 prediction 0.42730812662319 Functional Loss - AP3M2 ENSG00000070718 CDS Human protein_coding chr8:42019855 chr8:42019858 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_86700 0 0 1 0 2 AP3M2 chr8:42019936 5'GT 42019936 Upstream 79bp
chr15 99901591 99901591 1 + C T PRAD 99901588 + 99901568 99901608 41 GGTGAAGCTGCTTTCCTTTTCATCAGGGCAGCGAACCGTTT GGTGAAGCTGCTTTCCTTTTCATTAGGGCAGCGAACCGTTT < 41bp 0.730827027628962 0.517173091306676 0.108775675 0.17966291 prediction 0.427307872644572 Functional Loss - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99901588 chr15:99901591 nonsynonymous SNV 0.965 2 24 hm5C_associated_SNPs_86701 0 0 1 1 1 LRRC28 chr15:99901541 3'AG 99901541 Downstream 51bp
chr2 71206278 71206278 1 + C T COAD 71206276 + 71206256 71206296 41 TCAGTGCGCAGGCGACTGCCCTCGCCAGGCCGCGCCGCCCT TCAGTGCGCAGGCGACTGCCCTTGCCAGGCCGCGCCGCCCT < 41bp 0.801285106533875 0.587632053026762 0.7430789 0.34165174 prediction 0.427306107014228 Functional Loss - ANKRD53 ENSG00000144031 CDS Human protein_coding chr2:71206276 chr2:71206278 synonymous SNV . 0 23 hm5C_associated_SNPs_86702 0 0 0 0 1 ANKRD53 chr2:71206227 3'AG 71206227 Downstream 52bp
chr1 214507632 214507632 1 + G A UCEC 214507629 + 214507609 214507649 41 GGGCCTGGAACACAAAGCCGCAGGGGAGAAAGCCCTGAAGA GGGCCTGGAACACAAAGCCGCAGAGGAGAAAGCCCTGAAGA < 41bp 0.785556980542872 0.571905649420265 0.9144542 0.63921684 prediction 0.427302662245213 Functional Loss - SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214507629 chr1:214507632 nonsynonymous SNV 0.793 4 24 hm5C_associated_SNPs_86704 0 0 1 0 2 SMYD2 chr1:214507543 3'AG 214507543 Downstream 90bp
chr1 214507632 214507632 1 + G A UCEC 214507629 + 214507609 214507649 41 GGGCCTGGAACACAAAGCCGCAGGGGAGAAAGCCCTGAAGA GGGCCTGGAACACAAAGCCGCAGAGGAGAAAGCCCTGAAGA < 41bp 0.785556980542872 0.571905649420265 0.9144542 0.63921684 prediction 0.427302662245213 Functional Loss - SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214507629 chr1:214507632 nonsynonymous SNV 0.793 4 24 hm5C_associated_SNPs_86704 0 0 1 0 2 SMYD2 chr1:214507651 5'GT 214507651 Upstream 20bp
chr20 43566815 43566815 1 + G T UCEC 43566812 + 43566792 43566832 41 TGTTGCTCATGCTGGAGTCTCCAGAATCCCTCCATGCCAAG TGTTGCTCATGCTGGAGTCTCCATAATCCCTCCATGCCAAG < 41bp 0.713649532930646 0.313268248664001 0.8808998 0.11827654 prediction 0.427299065861292 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43566812 chr20:43566815 stopgain 0.998 1 24 hm5C_associated_SNPs_86706 0 0 1 0 1 PABPC1L chr20:43566832 5'GT 43566832 Upstream 18bp
chr5 145834750 145834750 1 + G A HNSC 145834747 + 145834727 145834767 41 GCGAGGCCCTCCTCCACCACCACGGCCGCCCTTTGGACGTC GCGAGGCCCTCCTCCACCACCACAGCCGCCCTTTGGACGTC < 41bp 0.813105209646557 0.599457924701854 0.64793575 0.37368947 prediction 0.427294569889407 Functional Loss - TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145834747 chr5:145834750 nonsynonymous SNV 0.976 3 24 hm5C_associated_SNPs_86707 0 0 1 0 1 TCERG1 chr5:145834844 5'GT 145834844 Upstream 95bp
chr14 21463003 21463003 1 + C T UCEC 21463000 + 21462980 21463020 41 TTTTCCTTAAGTGAACTGCCCAGCAAGGCTGACCGCACTGA TTTTCCTTAAGTGAACTGCCCAGTAAGGCTGACCGCACTGA < 41bp 0.762849502661166 0.549204290212161 0.14353973 0.30449712 prediction 0.427290424898011 Functional Loss - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21463000 chr14:21463003 synonymous SNV . 0 24 hm5C_associated_SNPs_86708 0 0 1 0 2 METTL17 chr14:21462953 3'AG 21462953 Downstream 51bp
chr14 21463003 21463003 1 + C T UCEC 21463000 + 21462980 21463020 41 TTTTCCTTAAGTGAACTGCCCAGCAAGGCTGACCGCACTGA TTTTCCTTAAGTGAACTGCCCAGTAAGGCTGACCGCACTGA < 41bp 0.762849502661166 0.549204290212161 0.14353973 0.30449712 prediction 0.427290424898011 Functional Loss - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21463000 chr14:21463003 synonymous SNV . 0 24 hm5C_associated_SNPs_86708 0 0 1 0 2 METTL17 chr14:21463060 5'GT 21463060 Upstream 58bp
chr15 27193130 27193130 1 + G A SKCM 27193127 + 27193107 27193147 41 GTCAACAAACGCTTTTACAACTGGGAAGATGTCTCACCCCC GTCAACAAACGCTTTTACAACTGAGAAGATGTCTCACCCCC < 41bp 0.791236599320701 0.57759368931963 0.2164081 0.082742035 prediction 0.427285820002141 Functional Loss - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27193127 chr15:27193130 nonsynonymous SNV 0.902 1 24 hm5C_associated_SNPs_86710 0 0 0 0 1 GABRA5 chr15:27193081 3'AG 27193081 Downstream 50bp
chr6 170175417 170175417 1 + G T UCEC 170175414 + 170175394 170175434 41 TTTGGGCTCTGCTGCCTTTCCCCGAAGAACTCACTCGGCAA TTTGGGCTCTGCTGCCTTTCCCCTAAGAACTCACTCGGCAA < 41bp 0.934945760919499 0.721304135472806 0.35191804 0.108112276 prediction 0.427283250893385 Functional Loss - ERMARD ENSG00000130023 CDS Human protein_coding chr6:170175414 chr6:170175417 stopgain 0.000 0 24 hm5C_associated_SNPs_86712 0 0 1 0 2 ERMARD chr6:170175366 3'AG 170175366 Downstream 52bp
chr6 170175417 170175417 1 + G T UCEC 170175414 + 170175394 170175434 41 TTTGGGCTCTGCTGCCTTTCCCCGAAGAACTCACTCGGCAA TTTGGGCTCTGCTGCCTTTCCCCTAAGAACTCACTCGGCAA < 41bp 0.934945760919499 0.721304135472806 0.35191804 0.108112276 prediction 0.427283250893385 Functional Loss - ERMARD ENSG00000130023 CDS Human protein_coding chr6:170175414 chr6:170175417 stopgain 0.000 0 24 hm5C_associated_SNPs_86712 0 0 1 0 2 ERMARD chr6:170175442 5'GT 170175442 Upstream 26bp
chrX 106163743 106163743 1 + G A rs368168388 106163740 + 106163720 106163760 41 AGGATCCCTTTCTCCCTCTCCAGGGGCATCTCCCCCTCCAA AGGATCCCTTTCTCCCTCTCCAGAGGCATCTCCCCCTCCAA < 41bp 0.713638014120134 0.455987506439189 0.96683586 0.95830935 prediction 0.427276028240269 Functional Loss - CLDN2 ENSG00000165376 UTR5 Human protein_coding chrX:106163740 chrX:106163743 . . 0 24 hm5C_associated_SNPs_86715 0 0 0 0 1 CLDN2 chrX:106163781 5'GT 106163781 Upstream 39bp
chr3 98510745 98510745 1 + G A UCEC 98510742 + 98510722 98510762 41 CATTGGCGTTTTACATATGTCACGAAGTTCACCTAGCTGGT CATTGGCGTTTTACATATGTCACAAAGTTCACCTAGCTGGT < 41bp 0.778584464137925 0.564948752935595 0.095853 0.049528927 prediction 0.427271422404661 Functional Loss - ST3GAL6 ENSG00000064225 CDS Human protein_coding chr3:98510742 chr3:98510745 nonsynonymous SNV 0.968 3 24 hm5C_associated_SNPs_86718 0 0 0 0 2 ST3GAL6 chr3:98510685 3'AG 98510685 Downstream 61bp
chr3 98510745 98510745 1 + G A UCEC 98510742 + 98510722 98510762 41 CATTGGCGTTTTACATATGTCACGAAGTTCACCTAGCTGGT CATTGGCGTTTTACATATGTCACAAAGTTCACCTAGCTGGT < 41bp 0.778584464137925 0.564948752935595 0.095853 0.049528927 prediction 0.427271422404661 Functional Loss - ST3GAL6 ENSG00000064225 CDS Human protein_coding chr3:98510742 chr3:98510745 nonsynonymous SNV 0.968 3 24 hm5C_associated_SNPs_86718 0 0 0 0 2 ST3GAL6 chr3:98510837 5'GT 98510837 Upstream 93bp
chr19 51363270 51363270 1 + G A SKCM 51363267 + 51363247 51363287 41 TTGTCTGTAATGGTGTGCTTCAAGGTATCACGTCATGGGGC TTGTCTGTAATGGTGTGCTTCAAAGTATCACGTCATGGGGC < 41bp 0.823894891148737 0.610261039106243 0.89621943 0.42324555 prediction 0.427267704084987 Functional Loss - KLK3 ENSG00000142515 CDS Human protein_coding chr19:51363267 chr19:51363270 nonsynonymous SNV 0.006 3 24 hm5C_associated_SNPs_86720 0 0 0 0 1 KLK3 chr19:51363228 3'AG 51363228 Downstream 43bp
chr6 106547368 106547368 1 + G C LUSC 106547367 + 106547347 106547387 41 AACTTCTTGTGTGGTATTGTCGGGACTTTGCAGAAAGGCTT AACTTCTTGTGTGGTATTGTCCGGACTTTGCAGAAAGGCTT < 41bp 0.889179252305335 0.675546654276872 0.9070047 0.8322853 prediction 0.427265196056925 Functional Loss - PRDM1 ENSG00000057657 CDS Human protein_coding chr6:106547367 chr6:106547368 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_86721 0 0 0 0 1 PRDM1 chr6:106547427 5'GT 106547427 Upstream 60bp
chr1 13933760 13933760 1 + G T UCEC 13933757 + 13933737 13933777 41 CCGAAGATGATGTGGTGACTCCAGGAACCAGCGAAGACCGC CCGAAGATGATGTGGTGACTCCATGAACCAGCGAAGACCGC < 41bp 0.713630356266036 0.315338452685133 0.6270431 0.2253497 prediction 0.427260712532072 Functional Loss - PDPN ENSG00000162493 CDS Human protein_coding chr1:13933757 chr1:13933760 stopgain 0.002 0 24 hm5C_associated_SNPs_86723 0 0 0 0 2 PDPN chr1:13933668 3'AG 13933668 Downstream 93bp
chr1 13933760 13933760 1 + G T UCEC 13933757 + 13933737 13933777 41 CCGAAGATGATGTGGTGACTCCAGGAACCAGCGAAGACCGC CCGAAGATGATGTGGTGACTCCATGAACCAGCGAAGACCGC < 41bp 0.713630356266036 0.315338452685133 0.6270431 0.2253497 prediction 0.427260712532072 Functional Loss - PDPN ENSG00000162493 CDS Human protein_coding chr1:13933757 chr1:13933760 stopgain 0.002 0 24 hm5C_associated_SNPs_86723 0 0 0 0 2 PDPN chr1:13933801 5'GT 13933801 Upstream 42bp
chr20 30193543 30193543 1 + C T rs200577120 30193541 + 30193521 30193561 41 TCGGAATCCGAAGTTGGAACCCCCGGGGGCCGAGGGCTGCC TCGGAATCCGAAGTTGGAACCCTCGGGGGCCGAGGGCTGCC < 41bp 0.713629851162323 0.466830419739155 0.4487461 0.4649021 prediction 0.427259702324647 Functional Loss - ID1 ENSG00000125968 CDS Human protein_coding chr20:30193541 chr20:30193543 nonsynonymous SNV 0.050 0 23 hm5C_associated_SNPs_86724 0 0 1 0 1 ID1 chr20:30193616 5'GT 30193616 Upstream 74bp
chrX 150345295 150345295 1 + G A SKCM 150345292 + 150345272 150345312 41 CTAATCATCTTTATGTTCTGCGCGATGGTTATCACCATCGT CTAATCATCTTTATGTTCTGCGCAATGGTTATCACCATCGT < 41bp 0.713629216029722 0.474008115238402 0.15330598 0.044989675 prediction 0.427258432059443 Functional Loss - GPR50 ENSG00000102195 CDS Human protein_coding chrX:150345292 chrX:150345295 synonymous SNV . 0 24 hm5C_associated_SNPs_86725 0 0 0 0 1 GPR50 chrX:150345380 5'GT 150345380 Upstream 86bp
chr1 156107534 156107534 1 + C T rs4641 156107532 + 156107512 156107552 41 ATGACCTGCTCCATCACCACCACGTGAGTGGTAGCCGCCGC ATGACCTGCTCCATCACCACCATGTGAGTGGTAGCCGCCGC < 41bp 0.713620031911004 0.460200152288231 0.75868034 0.6764117 prediction 0.427240063822008 Functional Loss - LMNA ENSG00000160789 CDS Human protein_coding chr1:156107532 chr1:156107534 synonymous SNV . 0 23 hm5C_associated_SNPs_86728 14 0 1 0 2 LMNA chr1:156107445 3'AG 156107445 Downstream 90bp
chr1 156107534 156107534 1 + C T rs4641 156107532 + 156107512 156107552 41 ATGACCTGCTCCATCACCACCACGTGAGTGGTAGCCGCCGC ATGACCTGCTCCATCACCACCATGTGAGTGGTAGCCGCCGC < 41bp 0.713620031911004 0.460200152288231 0.75868034 0.6764117 prediction 0.427240063822008 Functional Loss - LMNA ENSG00000160789 CDS Human protein_coding chr1:156107532 chr1:156107534 synonymous SNV . 0 23 hm5C_associated_SNPs_86728 14 0 1 0 2 LMNA chr1:156107534 5'GT 156107534 Upstream 1bp
chr8 66617088 66617088 1 + C T SKCM 66617086 + 66617066 66617106 41 CACTGCAGAAGATTTGCGCTCTCGAAAATGAACTTGCTGCT CACTGCAGAAGATTTGCGCTCTTGAAAATGAACTTGCTGCT < 41bp 0.881904374551767 0.668285933758299 0.8846369 0.51808286 prediction 0.427236881586935 Functional Loss - MTFR1 ENSG00000066855 CDS Human protein_coding chr8:66617086 chr8:66617088 synonymous SNV . 0 23 hm5C_associated_SNPs_86730 0 0 1 0 1 MTFR1 chr8:66617164 5'GT 66617164 Upstream 77bp
chr2 30785113 30785113 1 + G A UCEC 30785110 + 30785090 30785130 41 TTGATTACTTTTGTGATATTCACGAACCACTTCAACTCCTC TTGATTACTTTTGTGATATTCACAAACCACTTCAACTCCTC < 41bp 0.755486916192382 0.541872216264091 0.031617492 0.03847462 prediction 0.427229399856582 Functional Loss - LCLAT1 ENSG00000172954 CDS Human protein_coding chr2:30785110 chr2:30785113 nonsynonymous SNV 0.629 3 24 hm5C_associated_SNPs_86731 0 0 1 0 1 LCLAT1 chr2:30785158 5'GT 30785158 Upstream 46bp
chr2 27669207 27669207 1 + T C CESC 27669206 + 27669186 27669226 41 GCAAGAGTGAAACAGAAAGCCTGGCAGCCACGGTTTCCTGG GCAAGAGTGAAACAGAAAGCCCGGCAGCCACGGTTTCCTGG < 41bp 0.713614238579121 0.486996229912445 0.21502244 0.3017132 prediction 0.427228477158242 Functional Loss - IFT172 ENSG00000138002 CDS Human protein_coding chr2:27669206 chr2:27669207 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_86734 0 0 0 0 1 IFT172 chr2:27669168 3'AG 27669168 Downstream 40bp
chr7 128482643 128482643 1 + G A COAD 128482640 + 128482620 128482660 41 CTCCCGCAGGTGAACGTGGGCGAGGGCAGCCACCCCGAGCG CTCCCGCAGGTGAACGTGGGCGAAGGCAGCCACCCCGAGCG < 41bp 0.797648114231133 0.584035894503994 0.9152043 0.9096656 prediction 0.427224439454279 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128482640 chr7:128482643 synonymous SNV . 0 24 hm5C_associated_SNPs_86736 0 0 1 0 1 FLNC chr7:128482629 3'AG 128482629 Downstream 15bp
chr16 88110273 88110273 1 + G T rs201534157 88110269 + 88110249 88110289 41 GGCCATCCAGATTCAGTGAGCGGTGCCCATGGCACCAGGAG GGCCATCCAGATTCAGTGAGCGGTTCCCATGGCACCAGGAG < 41bp 0.713610997035639 0.499952118805404 0.10963237 0.17028436 prediction 0.427221994071278 Functional Loss - BANP ENSG00000172530 UTR3 Human protein_coding chr16:88110269 chr16:88110273 . . 0 25 hm5C_associated_SNPs_86737 0 0 1 0 1 BANP chr16:88110196 3'AG 88110196 Downstream 78bp
chr3 3182241 3182241 1 + C T COAD 3182238 + 3182218 3182258 41 ACTACACTACGGATTGATGTCACCACTGATGGAAGACATGC ACTACACTACGGATTGATGTCACTACTGATGGAAGACATGC < 41bp 0.765108111010638 0.551498263325251 0.02443409 0.05712223 prediction 0.427219695370773 Functional Loss - TRNT1 ENSG00000072756 CDS Human protein_coding chr3:3182238 chr3:3182241 synonymous SNV . 0 24 hm5C_associated_SNPs_86738 0 0 1 1 2 TRNT1 chr3:3182194 3'AG 3182194 Downstream 48bp
chr3 3182241 3182241 1 + C T COAD 3182238 + 3182218 3182258 41 ACTACACTACGGATTGATGTCACCACTGATGGAAGACATGC ACTACACTACGGATTGATGTCACTACTGATGGAAGACATGC < 41bp 0.765108111010638 0.551498263325251 0.02443409 0.05712223 prediction 0.427219695370773 Functional Loss - TRNT1 ENSG00000072756 CDS Human protein_coding chr3:3182238 chr3:3182241 synonymous SNV . 0 24 hm5C_associated_SNPs_86738 0 0 1 1 2 TRNT1 chr3:3182332 5'GT 3182332 Upstream 92bp
chr19 45175238 45175238 1 + C T BLCA 45175236 + 45175216 45175256 41 ATGGGGACCCAGGGCTGCTTCTCAAAGAGCCTCCTGCTCTC ATGGGGACCCAGGGCTGCTTCTTAAAGAGCCTCCTGCTCTC < 41bp 0.836590753721307 0.62298125486454 0.6986066 0.16226053 prediction 0.427218997713533 Functional Loss - CEACAM19 ENSG00000186567 CDS Human protein_coding chr19:45175236 chr19:45175238 nonsynonymous SNV 0.735 0 23 hm5C_associated_SNPs_86739 0 0 1 0 1 CEACAM19 chr19:45175258 5'GT 45175258 Upstream 21bp
chr10 23290921 23290921 1 + C T COAD 23290919 + 23290899 23290939 41 AATGATGAAGTGAGGAAGCACGCCAGTTGGGCAGTGATGGT AATGATGAAGTGAGGAAGCACGTCAGTTGGGCAGTGATGGT < 41bp 0.869658453466957 0.656050072359903 0.20270959 0.23192284 prediction 0.427216762214109 Functional Loss - ARMC3 ENSG00000165309 CDS Human protein_coding chr10:23290919 chr10:23290921 nonsynonymous SNV 0.988 4 23 hm5C_associated_SNPs_86740 0 0 0 0 2 ARMC3 chr10:23290848 3'AG 23290848 Downstream 74bp
chr10 23290921 23290921 1 + C T COAD 23290919 + 23290899 23290939 41 AATGATGAAGTGAGGAAGCACGCCAGTTGGGCAGTGATGGT AATGATGAAGTGAGGAAGCACGTCAGTTGGGCAGTGATGGT < 41bp 0.869658453466957 0.656050072359903 0.20270959 0.23192284 prediction 0.427216762214109 Functional Loss - ARMC3 ENSG00000165309 CDS Human protein_coding chr10:23290919 chr10:23290921 nonsynonymous SNV 0.988 4 23 hm5C_associated_SNPs_86740 0 0 0 0 2 ARMC3 chr10:23290984 5'GT 23290984 Upstream 64bp
chr1 158813818 158813818 1 + C T STAD 158813816 + 158813796 158813836 41 TCCCAAGAGCAGAGTAAGCCCCCAGGTCCCTCAGGAGCCAG TCCCAAGAGCAGAGTAAGCCCCTAGGTCCCTCAGGAGCCAG < 41bp 0.713594101706821 0.450577277872502 0.30430725 0.23124468 prediction 0.427188203413642 Functional Loss - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813816 chr1:158813818 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_86748 0 0 0 0 2 MNDA chr1:158813745 3'AG 158813745 Downstream 74bp
chr1 158813818 158813818 1 + C T STAD 158813816 + 158813796 158813836 41 TCCCAAGAGCAGAGTAAGCCCCCAGGTCCCTCAGGAGCCAG TCCCAAGAGCAGAGTAAGCCCCTAGGTCCCTCAGGAGCCAG < 41bp 0.713594101706821 0.450577277872502 0.30430725 0.23124468 prediction 0.427188203413642 Functional Loss - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813816 chr1:158813818 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_86748 0 0 0 0 2 MNDA chr1:158813912 5'GT 158813912 Upstream 95bp
chr9 136406041 136406041 1 + G T LUAD 136406039 + 136406019 136406059 41 TGCTTTTCTCCACCCACACACTGGACAAGTGTGGCATCTGC TGCTTTTCTCCACCCACACACTTGACAAGTGTGGCATCTGC < 41bp 0.713592891596788 0.364993189270655 0.7106276 0.2365726 prediction 0.427185783193575 Functional Loss - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136406039 chr9:136406041 synonymous SNV . 0 23 hm5C_associated_SNPs_86749 0 0 0 0 2 ADAMTSL2 chr9:136406000 3'AG 136406000 Downstream 42bp
chr9 136406041 136406041 1 + G T LUAD 136406039 + 136406019 136406059 41 TGCTTTTCTCCACCCACACACTGGACAAGTGTGGCATCTGC TGCTTTTCTCCACCCACACACTTGACAAGTGTGGCATCTGC < 41bp 0.713592891596788 0.364993189270655 0.7106276 0.2365726 prediction 0.427185783193575 Functional Loss - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136406039 chr9:136406041 synonymous SNV . 0 23 hm5C_associated_SNPs_86749 0 0 0 0 2 ADAMTSL2 chr9:136406123 5'GT 136406123 Upstream 83bp
chr3 171965342 171965342 1 + G A UCEC 171965339 + 171965319 171965359 41 TTAGGTGATTGAAGATAGTACTGGAGTCCGCCGGGTGGTGG TTAGGTGATTGAAGATAGTACTGAAGTCCGCCGGGTGGTGG < 41bp 0.786264888373408 0.572674518765973 0.33808106 0.2410106 prediction 0.427180739214871 Functional Loss - FNDC3B ENSG00000075420 CDS Human protein_coding chr3:171965339 chr3:171965342 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_86750 0 0 1 0 1 FNDC3B chr3:171965323 3'AG 171965323 Downstream 20bp
chr1 52879611 52879611 1 + C T SKCM 52879608 + 52879588 52879628 41 GCTACCGAGACTTGGACAAGCCCCGTCGCTCTCCCACACTG GCTACCGAGACTTGGACAAGCCCTGTCGCTCTCCCACACTG < 41bp 0.713587809391644 0.495614725002281 0.15003273 0.13824826 prediction 0.427175618783288 Functional Loss - PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52879608 chr1:52879611 nonsynonymous SNV 0.615 3 24 hm5C_associated_SNPs_86752 0 0 1 0 2 PRPF38A chr1:52879551 3'AG 52879551 Downstream 61bp
chr1 52879611 52879611 1 + C T SKCM 52879608 + 52879588 52879628 41 GCTACCGAGACTTGGACAAGCCCCGTCGCTCTCCCACACTG GCTACCGAGACTTGGACAAGCCCTGTCGCTCTCCCACACTG < 41bp 0.713587809391644 0.495614725002281 0.15003273 0.13824826 prediction 0.427175618783288 Functional Loss - PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52879608 chr1:52879611 nonsynonymous SNV 0.615 3 24 hm5C_associated_SNPs_86752 0 0 1 0 2 PRPF38A chr1:52879663 5'GT 52879663 Upstream 53bp
chr19 39868153 39868153 1 + A C COAD 39868149 + 39868129 39868169 41 TGCTGGAAGGCGGGAACCTACGAAACGCTCTGCAGGAGCTG TGCTGGAAGGCGGGAACCTACGAACCGCTCTGCAGGAGCTG < 41bp 0.713586246893587 0.293019457837938 0.3412431 0.36364377 prediction 0.427172493787174 Functional Loss - SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39868149 chr19:39868153 nonsynonymous SNV 0.978 2 25 hm5C_associated_SNPs_86754 0 0 1 0 1 SAMD4B chr19:39868125 3'AG 39868125 Downstream 29bp
chr11 63990560 63990560 1 + A C LUAD 63990559 + 63990539 63990579 41 GACGAGATCCTGGGCATCGCCAACAACCGACTGATCCGCAT GACGAGATCCTGGGCATCGCCCACAACCGACTGATCCGCAT < 41bp 0.822187122868514 0.60860356213926 0.31812948 0.08596969 prediction 0.427167121458508 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63990559 chr11:63990560 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_86756 0 0 0 0 1 FERMT3 chr11:63990520 3'AG 63990520 Downstream 41bp
chr12 549806 549806 1 + A T LAML 549804 + 549784 549824 41 CCCTAAAAGATAAGTTAGTACAAGAGAAAAAGCTGTCCAAT CCCTAAAAGATAAGTTAGTACATGAGAAAAAGCTGTCCAAT < 41bp 0.718185275084749 0.504604005683072 0.33748633 0.2049272 prediction 0.427162538803354 Functional Loss - CCDC77 ENSG00000120647 CDS Human protein_coding chr12:549804 chr12:549806 nonsynonymous SNV 0.176 4 23 hm5C_associated_SNPs_86757 0 0 0 0 1 CCDC77 chr12:549783 3'AG 549783 Downstream 24bp
chr8 21894179 21894179 1 + G T UCEC 21894177 + 21894157 21894197 41 CACAGCCAGAGCCAAGAAGCCAGGATTCAAGAAATGAGGAG CACAGCCAGAGCCAAGAAGCCATGATTCAAGAAATGAGGAG < 41bp 0.905040803336236 0.691463566645734 0.7941632 0.44880095 prediction 0.427154473381004 Functional Loss - NPM2 ENSG00000158806 CDS Human protein_coding chr8:21894177 chr8:21894179 stopgain 0.216 0 23 hm5C_associated_SNPs_86759 0 0 0 0 1 NPM2 chr8:21894149 3'AG 21894149 Downstream 31bp
chr4 38907442 38907442 1 + G T LUSC 38907439 + 38907419 38907459 41 CACTTCCCCTTCATCAGCCTCTCGGGGTATGCTGTCTGCCA CACTTCCCCTTCATCAGCCTCTCTGGGTATGCTGTCTGCCA < 41bp 0.713576469448894 0.308184316494353 0.02946198 0.058650285 prediction 0.427152938897788 Functional Loss - FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38907439 chr4:38907442 nonsynonymous SNV 0.058 3 24 hm5C_associated_SNPs_86761 0 0 1 0 2 FAM114A1 chr4:38907376 3'AG 38907376 Downstream 67bp
chr4 38907442 38907442 1 + G T LUSC 38907439 + 38907419 38907459 41 CACTTCCCCTTCATCAGCCTCTCGGGGTATGCTGTCTGCCA CACTTCCCCTTCATCAGCCTCTCTGGGTATGCTGTCTGCCA < 41bp 0.713576469448894 0.308184316494353 0.02946198 0.058650285 prediction 0.427152938897788 Functional Loss - FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38907439 chr4:38907442 nonsynonymous SNV 0.058 3 24 hm5C_associated_SNPs_86761 0 0 1 0 2 FAM114A1 chr4:38907482 5'GT 38907482 Upstream 41bp
chr16 72821576 72821576 1 + C T STAD 72821574 + 72821554 72821594 41 CCCCACAGAGCGCGCTCTCGCACGCCAGGCAGTGGTACGAG CCCCACAGAGCGCGCTCTCGCATGCCAGGCAGTGGTACGAG < 41bp 0.777019522665216 0.563443802060623 0.58327955 0.7098452 prediction 0.427151441209188 Functional Loss - ZFHX3 ENSG00000140836 CDS Human protein_coding chr16:72821574 chr16:72821576 synonymous SNV . 0 23 hm5C_associated_SNPs_86762 0 0 0 0 1 ZFHX3 chr16:72821562 3'AG 72821562 Downstream 15bp
chr2 46203638 46203638 1 + G T LUSC 46203635 + 46203615 46203655 41 AGGAAGCGGCAGGGGGCCGTCAGGCGCAGGGTCCATCAGGT AGGAAGCGGCAGGGGGCCGTCAGTCGCAGGGTCCATCAGGT < 41bp 0.713560901231849 0.343472795744705 0.91059554 0.35821712 prediction 0.427121802463697 Functional Loss - PRKCE ENSG00000171132 CDS Human protein_coding chr2:46203635 chr2:46203638 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_86770 0 0 1 0 2 PRKCE chr2:46203568 3'AG 46203568 Downstream 71bp
chr2 46203638 46203638 1 + G T LUSC 46203635 + 46203615 46203655 41 AGGAAGCGGCAGGGGGCCGTCAGGCGCAGGGTCCATCAGGT AGGAAGCGGCAGGGGGCCGTCAGTCGCAGGGTCCATCAGGT < 41bp 0.713560901231849 0.343472795744705 0.91059554 0.35821712 prediction 0.427121802463697 Functional Loss - PRKCE ENSG00000171132 CDS Human protein_coding chr2:46203635 chr2:46203638 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_86770 0 0 1 0 2 PRKCE chr2:46203727 5'GT 46203727 Upstream 90bp
chrX 101823513 101823513 1 + T C ESCA 101823512 + 101823492 101823532 41 CCACCCAGTCTGGGATGAAACTTGAGCAGTCTCAGAAGTGA CCACCCAGTCTGGGATGAAACCTGAGCAGTCTCAGAAGTGA < 41bp 0.784024445266195 0.570466207865228 0.28158486 0.1533302 prediction 0.427116474801935 Functional Loss - NXF4 ENSG00000196970 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:101823512 chrX:101823513 . . 0 22 hm5C_associated_SNPs_86773 0 0 0 0 1 NXF4 chrX:101823528 5'GT 101823528 Upstream 16bp
chr4 178882054 178882054 1 + G A SKCM 178882051 + 178882031 178882071 41 TCACAGCTGCTTTATGCAATCTGGAAAAAGTACGGGATTTC TCACAGCTGCTTTATGCAATCTGAAAAAAGTACGGGATTTC < 41bp 0.724809069907016 0.511257525191884 0.23168603 0.1399138 prediction 0.427103089430263 Functional Loss - LINC01098 ENSG00000231171 CDS Human lincRNA chr4:178882051 chr4:178882054 stopgain . 0 24 hm5C_associated_SNPs_86775 0 0 0 0 1 LINC01098 chr4:178882059 5'GT 178882059 Upstream 6bp
chr9 35794089 35794089 1 + G C LUAD 35794085 + 35794065 35794105 41 CGGGAACAGGCCCAGGCCCTCAGAGAGGCCTTTCAGGTATC CGGGAACAGGCCCAGGCCCTCAGACAGGCCTTTCAGGTATC < 41bp 0.713548194629884 0.406409188904638 0.87058157 0.35329247 prediction 0.427096389259767 Functional Loss - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35794085 chr9:35794089 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_86782 0 0 0 0 1 NPR2 chr9:35794100 5'GT 35794100 Upstream 12bp
chrX 37642838 37642838 1 + C T LUAD 37642836 + 37642816 37642856 41 GTCGAAATCTGCTGTCCTTCCTCAGGGGTTCCAGTGCGGTA GTCGAAATCTGCTGTCCTTCCTTAGGGGTTCCAGTGCGGTA < 41bp 0.713546756851514 0.428441793080177 0.012219191 0.007783085 prediction 0.427093513703028 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37642836 chrX:37642838 synonymous SNV . 0 23 hm5C_associated_SNPs_86784 0 0 0 5 1 CYBB chrX:37642853 5'GT 37642853 Upstream 16bp
chr3 14708348 14708348 1 + T C LIHC 14708347 + 14708327 14708367 41 TAATGAAAAAACCCTATTATCTGAAGATATGAGAAAAGAAC TAATGAAAAAACCCTATTATCCGAAGATATGAGAAAAGAAC < 41bp 0.713541668073891 0.458198988749028 0.20715275 0.42691863 prediction 0.427083336147781 Functional Loss - CCDC174 ENSG00000154781 CDS Human protein_coding chr3:14708347 chr3:14708348 synonymous SNV . 0 22 hm5C_associated_SNPs_86789 0 0 1 0 1 CCDC174 chr3:14708312 3'AG 14708312 Downstream 37bp
chr16 70513219 70513219 1 + T C LUAD 70513218 + 70513198 70513238 41 CGTGCATGGCCAGAGCCTGGCTGGGGCAGGCGGTGGAGGCT CGTGCATGGCCAGAGCCTGGCCGGGGCAGGCGGTGGAGGCT < 41bp 0.804665475596141 0.591128166309858 0.87028944 0.9165503 prediction 0.427074618572566 Functional Loss - FUK ENSG00000157353 CDS Human protein_coding chr16:70513218 chr16:70513219 synonymous SNV . 0 22 hm5C_associated_SNPs_86792 0 0 1 0 1 FUK chr16:70513306 5'GT 70513306 Upstream 88bp
chr16 21983256 21983256 1 + A T STAD 21983252 + 21983232 21983272 41 ATCTGGCCCCAGGTGAAATCCGAGAACAGAATGGAGACAGT ATCTGGCCCCAGGTGAAATCCGAGTACAGAATGGAGACAGT < 41bp 0.898161520877791 0.68462591857858 0.8521408 0.8620285 prediction 0.427071204598422 Functional Loss - UQCRC2 ENSG00000140740 CDS Human protein_coding chr16:21983252 chr16:21983256 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_86793 0 0 1 1 1 UQCRC2 chr16:21983244 3'AG 21983244 Downstream 13bp
chr20 30418689 30418689 1 + G A COAD 30418686 + 30418666 30418706 41 GATCATTGACTTTGGCCTGGCACGGAGGTACCACCTGGGTG GATCATTGACTTTGGCCTGGCACAGAGGTACCACCTGGGTG < 41bp 0.713534031363456 0.46011726604644 0.21509954 0.18745786 prediction 0.427068062726911 Functional Loss - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30418686 chr20:30418689 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_86795 0 0 1 0 2 MYLK2 chr20:30418622 3'AG 30418622 Downstream 68bp
chr20 30418689 30418689 1 + G A COAD 30418686 + 30418666 30418706 41 GATCATTGACTTTGGCCTGGCACGGAGGTACCACCTGGGTG GATCATTGACTTTGGCCTGGCACAGAGGTACCACCTGGGTG < 41bp 0.713534031363456 0.46011726604644 0.21509954 0.18745786 prediction 0.427068062726911 Functional Loss - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30418686 chr20:30418689 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_86795 0 0 1 0 2 MYLK2 chr20:30418692 5'GT 30418692 Upstream 4bp
chr1 156180047 156180047 1 + C T HNSC 156180045 + 156180025 156180065 41 TTCCAGGTTGAGGGCAAGAACTCCATCATCCTGACCTTCAG TTCCAGGTTGAGGGCAAGAACTTCATCATCCTGACCTTCAG < 41bp 0.868259840993745 0.654730095327575 0.9422585 0.072570056 prediction 0.427059491332338 Functional Loss - SLC25A44 ENSG00000160785 CDS Human protein_coding chr1:156180045 chr1:156180047 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_86797 0 0 1 1 1 SLC25A44 chr1:156180031 3'AG 156180031 Downstream 17bp
chrX 30236748 30236748 1 + G A SARC 30236745 + 30236725 30236765 41 CGTGCCCGTGAGAAACGCCGCAAGGCCCGAGATGAGACCCG CGTGCCCGTGAGAAACGCCGCAAAGCCCGAGATGAGACCCG < 41bp 0.80532698035687 0.591798845154401 0.27739018 0.063476115 prediction 0.427056270404938 Functional Loss - MAGEB2 ENSG00000099399 CDS Human protein_coding chrX:30236745 chrX:30236748 synonymous SNV . 0 24 hm5C_associated_SNPs_86798 0 0 1 0 1 MAGEB2 chrX:30236693 3'AG 30236693 Downstream 56bp
chr5 23521286 23521286 1 + T C UCEC 23521285 + 23521265 23521305 41 GACAGCACTCAAGACTAAAACTGGGTAAGAAAAAATATTTG GACAGCACTCAAGACTAAAACCGGGTAAGAAAAAATATTTG < 41bp 0.747332893943596 0.533811324887381 0.7576246 0.90024966 prediction 0.42704313811243 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23521285 chr5:23521286 nonsynonymous SNV 0.131 0 22 hm5C_associated_SNPs_86800 0 0 0 0 1 PRDM9 chr5:23521288 5'GT 23521288 Upstream 3bp
chr6 26158719 26158719 1 + G A BLCA 26158716 + 26158696 26158736 41 GCCTGCTGCTTCCGGGGGAGCTGGCCAAGCACGCCGTGTCG GCCTGCTGCTTCCGGGGGAGCTGACCAAGCACGCCGTGTCG < 41bp 0.808231986670844 0.594711642992637 0.9105147 0.9073395 prediction 0.427040687356413 Functional Loss - HIST1H2BD ENSG00000158373 CDS Human protein_coding chr6:26158716 chr6:26158719 nonsynonymous SNV 0.973 2 24 hm5C_associated_SNPs_86801 0 0 1 0 1 HIST1H2BD chr6:26158787 5'GT 26158787 Upstream 69bp
chr20 10025143 10025143 1 + C T STAD 10025140 + 10025120 10025160 41 GGTGAAGTGAATGCATTTGACAACGACAGGCATCACGCTGC GGTGAAGTGAATGCATTTGACAATGACAGGCATCACGCTGC < 41bp 0.714729927030488 0.501215976035879 0.1580604 0.22076517 prediction 0.427027901989218 Functional Loss - ANKEF1 ENSG00000132623 CDS Human protein_coding chr20:10025140 chr20:10025143 synonymous SNV . 0 24 hm5C_associated_SNPs_86806 0 0 0 0 1 ANKEF1 chr20:10025191 5'GT 10025191 Upstream 49bp
chr17 12887935 12887935 1 + C T rs201578442 12887932 + 12887912 12887952 41 CCAGTCCGCTGGCCAGCCGTCCCCAGTCAGCCTGTCCCCCA CCAGTCCGCTGGCCAGCCGTCCCTAGTCAGCCTGTCCCCCA < 41bp 0.731670658312701 0.518157463154181 0.08662301 0.097497314 prediction 0.42702639031704 Functional Loss - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12887932 chr17:12887935 nonsynonymous SNV 0.980 4 24 hm5C_associated_SNPs_86807 0 0 0 0 1 ARHGAP44 chr17:12887848 3'AG 12887848 Downstream 88bp
chr7 40899967 40899967 1 + G C THCA 40899966 + 40899946 40899986 41 GTCAGAGGCCAGGCCGCCCCCGCTGCTCGGGCAGCACACAA GTCAGAGGCCAGGCCGCCCCCCCTGCTCGGGCAGCACACAA < 41bp 0.713513140569344 0.431903663389827 0.09350142 0.0373317 prediction 0.427026281138688 Functional Loss - SUGCT ENSG00000175600 CDS Human protein_coding chr7:40899966 chr7:40899967 synonymous SNV . 0 22 hm5C_associated_SNPs_86808 0 0 0 0 1 SUGCT chr7:40899915 3'AG 40899915 Downstream 53bp
chr8 124812083 124812083 1 + G A GBM 124812080 + 124812060 124812100 41 GTTCCTACCTCAAATGTGCTCACGATGTTGAATGATGCTTT GTTCCTACCTCAAATGTGCTCACAATGTTGAATGATGCTTT < 41bp 0.761357672010029 0.547848164415619 0.086217284 0.11412346 prediction 0.42701901518882 Functional Loss - FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124812080 chr8:124812083 synonymous SNV . 0 24 hm5C_associated_SNPs_86811 0 0 0 0 1 FAM91A1 chr8:124812125 5'GT 124812125 Upstream 43bp
chr2 47630474 47630474 1 + G A LUAD 47630471 + 47630451 47630491 41 GACTTCTATACGGCGCACGGCGAGGACGCGCTGCTGGCCGC GACTTCTATACGGCGCACGGCGAAGACGCGCTGCTGGCCGC < 41bp 0.779874181590861 0.56636510213232 0.888046 0.8304217 prediction 0.427018158917082 Functional Loss - MSH2 ENSG00000095002 CDS Human protein_coding chr2:47630471 chr2:47630474 synonymous SNV . 0 24 hm5C_associated_SNPs_86812 0 0 1 0 1 MSH2 chr2:47630541 5'GT 47630541 Upstream 68bp
chr3 16237348 16237348 1 + C T SKCM 16237346 + 16237326 16237366 41 ATGATGAGGCCTGGTCCACTCTCCTGCGGACTGTACACAGC ATGATGAGGCCTGGTCCACTCTTCTGCGGACTGTACACAGC < 41bp 0.713506749527931 0.413415699289266 0.16493398 0.07593092 prediction 0.427013499055861 Functional Loss - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16237346 chr3:16237348 synonymous SNV . 0 23 hm5C_associated_SNPs_86813 0 0 0 0 2 GALNT15 chr3:16237267 3'AG 16237267 Downstream 82bp
chr3 16237348 16237348 1 + C T SKCM 16237346 + 16237326 16237366 41 ATGATGAGGCCTGGTCCACTCTCCTGCGGACTGTACACAGC ATGATGAGGCCTGGTCCACTCTTCTGCGGACTGTACACAGC < 41bp 0.713506749527931 0.413415699289266 0.16493398 0.07593092 prediction 0.427013499055861 Functional Loss - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16237346 chr3:16237348 synonymous SNV . 0 23 hm5C_associated_SNPs_86813 0 0 0 0 2 GALNT15 chr3:16237433 5'GT 16237433 Upstream 86bp
chr19 56544053 56544053 1 + C T LUAD 56544050 + 56544030 56544070 41 TTGGCACCCACCCACACCTGCGGCAGCTGGACCTGGGCAGC TTGGCACCCACCCACACCTGCGGTAGCTGGACCTGGGCAGC < 41bp 0.734084858499369 0.520583785782943 0.8693026 0.8329721 prediction 0.427002145432851 Functional Loss - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56544050 chr19:56544053 stopgain 0.051 0 24 hm5C_associated_SNPs_86819 1 0 0 0 2 NLRP5 chr19:56543977 3'AG 56543977 Downstream 77bp
chr19 56544053 56544053 1 + C T LUAD 56544050 + 56544030 56544070 41 TTGGCACCCACCCACACCTGCGGCAGCTGGACCTGGGCAGC TTGGCACCCACCCACACCTGCGGTAGCTGGACCTGGGCAGC < 41bp 0.734084858499369 0.520583785782943 0.8693026 0.8329721 prediction 0.427002145432851 Functional Loss - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56544050 chr19:56544053 stopgain 0.051 0 24 hm5C_associated_SNPs_86819 1 0 0 0 2 NLRP5 chr19:56544147 5'GT 56544147 Upstream 95bp
chr19 2810332 2810332 1 + G A BLCA 2810329 + 2810309 2810349 41 TCGCCATGTTCAGCGGGACCCACGTGGAGCGGGACTTTGTG TCGCCATGTTCAGCGGGACCCACATGGAGCGGGACTTTGTG < 41bp 0.713496895290767 0.474527292308075 0.75389135 0.40025124 prediction 0.426993790581534 Functional Loss - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2810329 chr19:2810332 nonsynonymous SNV 0.977 4 24 hm5C_associated_SNPs_86822 0 0 1 0 1 THOP1 chr19:2810302 3'AG 2810302 Downstream 31bp
chr4 111409736 111409736 1 + G A SKCM 111409733 + 111409713 111409753 41 GATCATGAACCAACAGATGCCAGGAAATCTTTTCCTTGTTT GATCATGAACCAACAGATGCCAGAAAATCTTTTCCTTGTTT < 41bp 0.713494545309692 0.48903631685484 0.17426339 0.107598394 prediction 0.426989090619385 Functional Loss - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111409733 chr4:111409736 synonymous SNV . 0 24 hm5C_associated_SNPs_86825 0 0 0 0 1 ENPEP chr4:111409697 3'AG 111409697 Downstream 40bp
chr14 24607279 24607279 1 + C T STAD 24607276 + 24607256 24607296 41 AGGTCACCACCTGGTTGCAGCTGCAGATACCTCGGATTGAG AGGTCACCACCTGGTTGCAGCTGTAGATACCTCGGATTGAG < 41bp 0.756420839567304 0.542927453289049 0.1503838 0.17434928 prediction 0.42698677255651 Functional Loss - PSME1 ENSG00000092010 CDS Human protein_coding chr14:24607276 chr14:24607279 stopgain 0.993 1 24 hm5C_associated_SNPs_86826 0 0 1 0 2 PSME1 chr14:24607258 3'AG 24607258 Downstream 22bp
chr14 24607279 24607279 1 + C T STAD 24607276 + 24607256 24607296 41 AGGTCACCACCTGGTTGCAGCTGCAGATACCTCGGATTGAG AGGTCACCACCTGGTTGCAGCTGTAGATACCTCGGATTGAG < 41bp 0.756420839567304 0.542927453289049 0.1503838 0.17434928 prediction 0.42698677255651 Functional Loss - PSME1 ENSG00000092010 CDS Human protein_coding chr14:24607276 chr14:24607279 stopgain 0.993 1 24 hm5C_associated_SNPs_86826 0 0 1 0 2 PSME1 chr14:24607326 5'GT 24607326 Upstream 48bp
chr16 57448995 57448995 1 + C T CESC 57448993 + 57448973 57449013 41 CCCCGCTCCTCTCCCTGCAGCTCGAGGGACCAATGTGGGCC CCCCGCTCCTCTCCCTGCAGCTTGAGGGACCAATGTGGGCC < 41bp 0.851589237795564 0.638097629934746 0.21197674 0.23600715 prediction 0.426983215721635 Functional Loss - CCL17 ENSG00000102970 CDS Human protein_coding chr16:57448993 chr16:57448995 stopgain 0.727 0 23 hm5C_associated_SNPs_86827 0 0 0 0 1 CCL17 chr16:57448993 3'AG 57448993 Downstream 3bp
chr1 1394594 1394594 1 + G A rs199523351 1394591 + 1394571 1394611 41 CTGAACGCCTTCCTGTACCGCACGGGCCAGCACAGCAACAA CTGAACGCCTTCCTGTACCGCACAGGCCAGCACAGCAACAA < 41bp 0.801645123412112 0.5881563182377 0.23255414 0.15999329 prediction 0.426977610348824 Functional Loss - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1394591 chr1:1394594 synonymous SNV . 0 24 hm5C_associated_SNPs_86829 0 0 0 0 2 ATAD3C chr1:1394541 3'AG 1394541 Downstream 54bp
chr1 1394594 1394594 1 + G A rs199523351 1394591 + 1394571 1394611 41 CTGAACGCCTTCCTGTACCGCACGGGCCAGCACAGCAACAA CTGAACGCCTTCCTGTACCGCACAGGCCAGCACAGCAACAA < 41bp 0.801645123412112 0.5881563182377 0.23255414 0.15999329 prediction 0.426977610348824 Functional Loss - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1394591 chr1:1394594 synonymous SNV . 0 24 hm5C_associated_SNPs_86829 0 0 0 0 2 ATAD3C chr1:1394611 5'GT 1394611 Upstream 18bp
chr3 57817251 57817251 1 + C T UCEC 57817249 + 57817229 57817269 41 AGTAGACGTGACAGAGAATACACGGAAAGGTACGGGTATGG AGTAGACGTGACAGAGAATACATGGAAAGGTACGGGTATGG < 41bp 0.71348652713619 0.450596232107212 0.21014756 0.18247047 prediction 0.42697305427238 Functional Loss - SLMAP ENSG00000163681 CDS Human protein_coding chr3:57817249 chr3:57817251 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_86831 0 0 1 0 1 SLMAP chr3:57817257 5'GT 57817257 Upstream 7bp
chr9 43861031 43861031 1 + C T LUAD 43861029 + 43861009 43861049 41 CCGCGTGGACGGTGGTGCGGCACGGTGGCCCCGACGCGGTG CCGCGTGGACGGTGGTGCGGCATGGTGGCCCCGACGCGGTG < 41bp 0.829777895205307 0.616291714681479 0.30666527 0.2225984 prediction 0.426972361047655 Functional Loss - CNTNAP3B ENSG00000154529 CDS Human protein_coding chr9:43861029 chr9:43861031 synonymous SNV . 0 23 hm5C_associated_SNPs_86832 0 0 0 0 2 CNTNAP3B chr9:43861003 3'AG 43861003 Downstream 29bp
chr9 43861031 43861031 1 + C T LUAD 43861029 + 43861009 43861049 41 CCGCGTGGACGGTGGTGCGGCACGGTGGCCCCGACGCGGTG CCGCGTGGACGGTGGTGCGGCATGGTGGCCCCGACGCGGTG < 41bp 0.829777895205307 0.616291714681479 0.30666527 0.2225984 prediction 0.426972361047655 Functional Loss - CNTNAP3B ENSG00000154529 CDS Human protein_coding chr9:43861029 chr9:43861031 synonymous SNV . 0 23 hm5C_associated_SNPs_86832 0 0 0 0 2 CNTNAP3B chr9:43861006 3'AG 43861006 Downstream 26bp
chr22 44323012 44323012 1 + G A COAD 44323009 + 44322989 44323029 41 TGTCTGATGGGGAAAACGTTCTGGTGTCTGACTTTCGGTCC TGTCTGATGGGGAAAACGTTCTGATGTCTGACTTTCGGTCC < 41bp 0.813967362634406 0.600482409130694 0.3902338 0.2742235 prediction 0.426969907007426 Functional Loss - PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44323009 chr22:44323012 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_86834 0 0 1 0 1 PNPLA3 chr22:44323047 5'GT 44323047 Upstream 36bp
chr19 42410730 42410730 1 + G T LUAD 42410728 + 42410708 42410748 41 CAGCACGGACCCAGGAAATCCAGGAGAACCTGCTCAGCTTG CAGCACGGACCCAGGAAATCCATGAGAACCTGCTCAGCTTG < 41bp 0.910940352470176 0.697456248347139 0.8970884 0.14478144 prediction 0.426968208246075 Functional Loss - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42410728 chr19:42410730 nonsynonymous SNV 0.976 1 23 hm5C_associated_SNPs_86835 0 0 1 0 1 ARHGEF1 chr19:42410772 5'GT 42410772 Upstream 43bp
chr12 661685 661685 1 + G A BLCA 661682 + 661662 661702 41 ACCAGCCTGAGAAGCAGGGGCTGGAGCAGCCAGGTACAGAG ACCAGCCTGAGAAGCAGGGGCTGAAGCAGCCAGGTACAGAG < 41bp 0.812575110291845 0.599097481651572 0.2930212 0.24917111 prediction 0.426955257280547 Functional Loss - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:661682 chr12:661685 nonsynonymous SNV 0.430 2 24 hm5C_associated_SNPs_86839 0 0 0 0 2 B4GALNT3 chr12:661633 3'AG 661633 Downstream 53bp
chr12 661685 661685 1 + G A BLCA 661682 + 661662 661702 41 ACCAGCCTGAGAAGCAGGGGCTGGAGCAGCCAGGTACAGAG ACCAGCCTGAGAAGCAGGGGCTGAAGCAGCCAGGTACAGAG < 41bp 0.812575110291845 0.599097481651572 0.2930212 0.24917111 prediction 0.426955257280547 Functional Loss - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:661682 chr12:661685 nonsynonymous SNV 0.430 2 24 hm5C_associated_SNPs_86839 0 0 0 0 2 B4GALNT3 chr12:661694 5'GT 661694 Upstream 10bp
chr17 27064984 27064984 1 + G A COAD 27064981 + 27064961 27065001 41 AGCTGGGCGCACGCAGAAAGCCGGCGTCACGCGCTCTGGGC AGCTGGGCGCACGCAGAAAGCCGACGTCACGCGCTCTGGGC < 41bp 0.713474709490353 0.456440417578648 0.90719444 0.6633067 prediction 0.426949418980706 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27064981 chr17:27064984 nonsynonymous SNV 0.539 4 24 hm5C_associated_SNPs_86841 0 0 0 0 1 NEK8 chr17:27065018 5'GT 27065018 Upstream 35bp
chr14 105930431 105930431 1 + C T COAD 105930429 + 105930409 105930449 41 AAGGCCGGTGTGGTGAACGGCACGGGGGCGCCGGGCCAGAG AAGGCCGGTGTGGTGAACGGCATGGGGGCGCCGGGCCAGAG < 41bp 0.834983849934798 0.62151331782073 0.66405255 0.61358947 prediction 0.426941064228137 Functional Loss - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105930429 chr14:105930431 nonsynonymous SNV 0.102 3 23 hm5C_associated_SNPs_86844 0 0 1 0 2 MTA1 chr14:105930369 3'AG 105930369 Downstream 63bp
chr14 105930431 105930431 1 + C T COAD 105930429 + 105930409 105930449 41 AAGGCCGGTGTGGTGAACGGCACGGGGGCGCCGGGCCAGAG AAGGCCGGTGTGGTGAACGGCATGGGGGCGCCGGGCCAGAG < 41bp 0.834983849934798 0.62151331782073 0.66405255 0.61358947 prediction 0.426941064228137 Functional Loss - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105930429 chr14:105930431 nonsynonymous SNV 0.102 3 23 hm5C_associated_SNPs_86844 0 0 1 0 2 MTA1 chr14:105930484 5'GT 105930484 Upstream 54bp
chr7 107546792 107546792 1 + A C PAAD 107546791 + 107546771 107546811 41 AAAGATGGTTGTTATTGGTGCAGGAGTAATAGGTGTAGAAT AAAGATGGTTGTTATTGGTGCCGGAGTAATAGGTGTAGAAT < 41bp 0.713468164302622 0.462249555329745 0.87068707 0.88358104 prediction 0.426936328605244 Functional Loss - DLD ENSG00000091140 CDS Human protein_coding chr7:107546791 chr7:107546792 synonymous SNV . 0 22 hm5C_associated_SNPs_86845 0 0 1 3 3 DLD chr7:107546712 3'AG 107546712 Downstream 81bp
chr7 107546792 107546792 1 + A C PAAD 107546791 + 107546771 107546811 41 AAAGATGGTTGTTATTGGTGCAGGAGTAATAGGTGTAGAAT AAAGATGGTTGTTATTGGTGCCGGAGTAATAGGTGTAGAAT < 41bp 0.713468164302622 0.462249555329745 0.87068707 0.88358104 prediction 0.426936328605244 Functional Loss - DLD ENSG00000091140 CDS Human protein_coding chr7:107546791 chr7:107546792 synonymous SNV . 0 22 hm5C_associated_SNPs_86845 0 0 1 3 3 DLD chr7:107546716 3'AG 107546716 Downstream 77bp
chr7 107546792 107546792 1 + A C PAAD 107546791 + 107546771 107546811 41 AAAGATGGTTGTTATTGGTGCAGGAGTAATAGGTGTAGAAT AAAGATGGTTGTTATTGGTGCCGGAGTAATAGGTGTAGAAT < 41bp 0.713468164302622 0.462249555329745 0.87068707 0.88358104 prediction 0.426936328605244 Functional Loss - DLD ENSG00000091140 CDS Human protein_coding chr7:107546791 chr7:107546792 synonymous SNV . 0 22 hm5C_associated_SNPs_86845 0 0 1 3 3 DLD chr7:107546813 5'GT 107546813 Upstream 22bp
chr13 101707749 101707749 1 + G A SKCM 101707746 + 101707726 101707766 41 CCGCAGGAAGCCGCGTCAGTCATGGGGTTCATTTTGCACAC CCGCAGGAAGCCGCGTCAGTCATAGGGTTCATTTTGCACAC < 41bp 0.772490298184668 0.559023856917007 0.7170938 0.28103846 prediction 0.426932882535322 Functional Loss - NALCN ENSG00000102452 CDS Human protein_coding chr13:101707746 chr13:101707749 synonymous SNV . 0 24 hm5C_associated_SNPs_86847 0 0 0 0 1 NALCN chr13:101707798 5'GT 101707798 Upstream 50bp
chr3 148868424 148868424 1 + C T STAD 148868421 + 148868401 148868441 41 TTTCACTGTGCGGTGCAGTGCGGCGGCAGCTCGTGAGGAGG TTTCACTGTGCGGTGCAGTGCGGTGGCAGCTCGTGAGGAGG < 41bp 0.754881259525701 0.541415258257668 0.48556477 0.34602967 prediction 0.426932002536067 Functional Loss - HPS3 ENSG00000163755 CDS Human protein_coding chr3:148868421 chr3:148868424 nonsynonymous SNV 0.080 1 24 hm5C_associated_SNPs_86848 0 0 1 0 2 HPS3 chr3:148868386 3'AG 148868386 Downstream 39bp
chr3 148868424 148868424 1 + C T STAD 148868421 + 148868401 148868441 41 TTTCACTGTGCGGTGCAGTGCGGCGGCAGCTCGTGAGGAGG TTTCACTGTGCGGTGCAGTGCGGTGGCAGCTCGTGAGGAGG < 41bp 0.754881259525701 0.541415258257668 0.48556477 0.34602967 prediction 0.426932002536067 Functional Loss - HPS3 ENSG00000163755 CDS Human protein_coding chr3:148868421 chr3:148868424 nonsynonymous SNV 0.080 1 24 hm5C_associated_SNPs_86848 0 0 1 0 2 HPS3 chr3:148868467 5'GT 148868467 Upstream 44bp
chr1 1961475 1961475 1 + G A ESCA 1961472 + 1961452 1961492 41 TCCCTCTCTGCTGCCGGCGTCACGCAGGAGCTGGCCATCTC TCCCTCTCTGCTGCCGGCGTCACACAGGAGCTGGCCATCTC < 41bp 0.713459205309935 0.478992287371618 0.17552581 0.07906851 prediction 0.42691841061987 Functional Loss - GABRD ENSG00000187730 CDS Human protein_coding chr1:1961472 chr1:1961475 synonymous SNV . 0 24 hm5C_associated_SNPs_86849 0 0 0 0 1 GABRD chr1:1961422 3'AG 1961422 Downstream 54bp
chr12 50500639 50500639 1 + C T SKCM 50500636 + 50500616 50500656 41 CCTGAAAGAGCTGATGCAGACACCAAACTTCCGTATCACAG CCTGAAAGAGCTGATGCAGACACTAAACTTCCGTATCACAG < 41bp 0.772732467326307 0.55927380607178 0.19149378 0.115897566 prediction 0.426917322509054 Functional Loss - GPD1 ENSG00000167588 CDS Human protein_coding chr12:50500636 chr12:50500639 nonsynonymous SNV 0.989 1 24 hm5C_associated_SNPs_86850 0 0 0 0 2 GPD1 chr12:50500588 3'AG 50500588 Downstream 52bp
chr12 50500639 50500639 1 + C T SKCM 50500636 + 50500616 50500656 41 CCTGAAAGAGCTGATGCAGACACCAAACTTCCGTATCACAG CCTGAAAGAGCTGATGCAGACACTAAACTTCCGTATCACAG < 41bp 0.772732467326307 0.55927380607178 0.19149378 0.115897566 prediction 0.426917322509054 Functional Loss - GPD1 ENSG00000167588 CDS Human protein_coding chr12:50500636 chr12:50500639 nonsynonymous SNV 0.989 1 24 hm5C_associated_SNPs_86850 0 0 0 0 2 GPD1 chr12:50500700 5'GT 50500700 Upstream 62bp
chr7 106524677 106524677 1 + C T UCEC 106524674 + 106524654 106524694 41 ACCTTTGTTCTTGGAATAGGCGACAGACACAATGACAATAT ACCTTTGTTCTTGGAATAGGCGATAGACACAATGACAATAT < 41bp 0.713456896924928 0.488715773246559 0.1097205 0.09365821 prediction 0.426913793849856 Functional Loss - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106524674 chr7:106524677 synonymous SNV . 0 24 hm5C_associated_SNPs_86852 0 0 0 0 2 PIK3CG chr7:106524600 3'AG 106524600 Downstream 78bp
chr7 106524677 106524677 1 + C T UCEC 106524674 + 106524654 106524694 41 ACCTTTGTTCTTGGAATAGGCGACAGACACAATGACAATAT ACCTTTGTTCTTGGAATAGGCGATAGACACAATGACAATAT < 41bp 0.713456896924928 0.488715773246559 0.1097205 0.09365821 prediction 0.426913793849856 Functional Loss - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106524674 chr7:106524677 synonymous SNV . 0 24 hm5C_associated_SNPs_86852 0 0 0 0 2 PIK3CG chr7:106524711 5'GT 106524711 Upstream 35bp
chr16 58550780 58550780 1 + C T UCEC 58550777 + 58550757 58550797 41 CTCCCCCGTGATGGTGCCTGCTGCAGACATACTAAACCACT CTCCCCCGTGATGGTGCCTGCTGTAGACATACTAAACCACT < 41bp 0.713455001196056 0.487857933115264 0.20979345 0.10311586 prediction 0.426910002392113 Functional Loss - SETD6 ENSG00000103037 CDS Human protein_coding chr16:58550777 chr16:58550780 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_86856 0 0 1 2 2 SETD6 chr16:58550712 3'AG 58550712 Downstream 69bp
chr16 58550780 58550780 1 + C T UCEC 58550777 + 58550757 58550797 41 CTCCCCCGTGATGGTGCCTGCTGCAGACATACTAAACCACT CTCCCCCGTGATGGTGCCTGCTGTAGACATACTAAACCACT < 41bp 0.713455001196056 0.487857933115264 0.20979345 0.10311586 prediction 0.426910002392113 Functional Loss - SETD6 ENSG00000103037 CDS Human protein_coding chr16:58550777 chr16:58550780 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_86856 0 0 1 2 2 SETD6 chr16:58550832 5'GT 58550832 Upstream 53bp
chr2 68613716 68613716 1 + C T BLCA 68613714 + 68613694 68613734 41 TCATGATTGCTTCATCGCTGCTCAATGAGGGGTATCTGCAG TCATGATTGCTTCATCGCTGCTTAATGAGGGGTATCTGCAG < 41bp 0.713453818786745 0.406069818408381 0.5344126 0.08191857 prediction 0.426907637573491 Functional Loss - PLEK ENSG00000115956 CDS Human protein_coding chr2:68613714 chr2:68613716 synonymous SNV . 0 23 hm5C_associated_SNPs_86859 0 0 0 0 1 PLEK chr2:68613634 3'AG 68613634 Downstream 83bp
chr11 57313775 57313775 1 + G A SKCM 57313772 + 57313752 57313792 41 GGGGCAGCCATTGGTGGTGTCAAGAACATGCTCTTGGAGTG GGGGCAGCCATTGGTGGTGTCAAAAACATGCTCTTGGAGTG < 41bp 0.747600739262879 0.534150018682246 0.426856 0.23685998 prediction 0.426901441161266 Functional Loss - SMTNL1 ENSG00000214872 CDS Human protein_coding chr11:57313772 chr11:57313775 synonymous SNV . 0 24 hm5C_associated_SNPs_86861 0 0 0 0 2 SMTNL1 chr11:57313706 3'AG 57313706 Downstream 70bp
chr11 57313775 57313775 1 + G A SKCM 57313772 + 57313752 57313792 41 GGGGCAGCCATTGGTGGTGTCAAGAACATGCTCTTGGAGTG GGGGCAGCCATTGGTGGTGTCAAAAACATGCTCTTGGAGTG < 41bp 0.747600739262879 0.534150018682246 0.426856 0.23685998 prediction 0.426901441161266 Functional Loss - SMTNL1 ENSG00000214872 CDS Human protein_coding chr11:57313772 chr11:57313775 synonymous SNV . 0 24 hm5C_associated_SNPs_86861 0 0 0 0 2 SMTNL1 chr11:57313820 5'GT 57313820 Upstream 46bp
chrX 153049639 153049639 1 + G C OV 153049638 + 153049618 153049658 41 TCTCCGGCTCGTCCAATCAGCGAGAGACCGGGGGCCTCCTG TCTCCGGCTCGTCCAATCAGCCAGAGACCGGGGGCCTCCTG < 41bp 0.898188432564016 0.684741518614768 0.9317268 0.81443596 prediction 0.426893827898496 Functional Loss - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153049638 chrX:153049639 nonsynonymous SNV 0.318 0 22 hm5C_associated_SNPs_86864 0 0 0 0 2 SRPK3 chrX:153049576 3'AG 153049576 Downstream 64bp
chrX 153049639 153049639 1 + G C OV 153049638 + 153049618 153049658 41 TCTCCGGCTCGTCCAATCAGCGAGAGACCGGGGGCCTCCTG TCTCCGGCTCGTCCAATCAGCCAGAGACCGGGGGCCTCCTG < 41bp 0.898188432564016 0.684741518614768 0.9317268 0.81443596 prediction 0.426893827898496 Functional Loss - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153049638 chrX:153049639 nonsynonymous SNV 0.318 0 22 hm5C_associated_SNPs_86864 0 0 0 0 2 SRPK3 chrX:153049668 5'GT 153049668 Upstream 30bp
chr15 91491934 91491934 1 + C T rs35027972 91491931 + 91491911 91491951 41 GTGGCCTCAGCGCTGGTGAACTGCACCAACAGCTATGACTA GTGGCCTCAGCGCTGGTGAACTGTACCAACAGCTATGACTA < 41bp 0.739162279973134 0.525715500062266 0.72124076 0.44975364 prediction 0.426893559821737 Functional Loss - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91491931 chr15:91491934 synonymous SNV . 0 24 hm5C_associated_SNPs_86865 0 0 1 0 2 UNC45A chr15:91491884 3'AG 91491884 Downstream 51bp
chr15 91491934 91491934 1 + C T rs35027972 91491931 + 91491911 91491951 41 GTGGCCTCAGCGCTGGTGAACTGCACCAACAGCTATGACTA GTGGCCTCAGCGCTGGTGAACTGTACCAACAGCTATGACTA < 41bp 0.739162279973134 0.525715500062266 0.72124076 0.44975364 prediction 0.426893559821737 Functional Loss - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91491931 chr15:91491934 synonymous SNV . 0 24 hm5C_associated_SNPs_86865 0 0 1 0 2 UNC45A chr15:91492024 5'GT 91492024 Upstream 91bp
chr16 2848986 2848986 1 + G C rs58782004 2848985 + 2848965 2849005 41 TGCGGCCACCGGGAAATTCACGCGCTGGTGGCGGGCGGAGT TGCGGCCACCGGGAAATTCACCCGCTGGTGGCGGGCGGAGT < 41bp 0.713439545186543 0.405817066177024 0.40090382 0.28217918 prediction 0.426879090373086 Functional Loss - PRSS41 ENSG00000215148 ncRNA_exonic Human protein_coding chr16:2848985 chr16:2848986 . . 0 22 hm5C_associated_SNPs_86871 0 0 0 0 1 PRSS41 chr16:2848960 3'AG 2848960 Downstream 27bp
chr1 177199193 177199193 1 + G T LUAD 177199189 + 177199169 177199209 41 CATCCCCTGGACTGGCTGCTCACAGACCGGGGCCCCTTCCA CATCCCCTGGACTGGCTGCTCACATACCGGGGCCCCTTCCA < 41bp 0.733359276986962 0.519920029490908 0.49080575 0.3777731 prediction 0.426878494992109 Functional Loss - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177199189 chr1:177199193 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_86872 0 0 0 0 1 BRINP2 chr1:177199281 5'GT 177199281 Upstream 89bp
chr17 8221973 8221973 1 + A C UCEC 8221969 + 8221949 8221989 41 TCACCCAAAGGCTGCGCTTCCACAAAGTCAAGGTACATCGC TCACCCAAAGGCTGCGCTTCCACACAGTCAAGGTACATCGC < 41bp 0.713438039596689 0.276153274419068 0.1361239 0.025858343 prediction 0.426876079193379 Functional Loss - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8221969 chr17:8221973 nonsynonymous SNV 0.994 3 25 hm5C_associated_SNPs_86873 0 0 0 0 2 ARHGEF15 chr17:8221888 3'AG 8221888 Downstream 86bp
chr17 8221973 8221973 1 + A C UCEC 8221969 + 8221949 8221989 41 TCACCCAAAGGCTGCGCTTCCACAAAGTCAAGGTACATCGC TCACCCAAAGGCTGCGCTTCCACACAGTCAAGGTACATCGC < 41bp 0.713438039596689 0.276153274419068 0.1361239 0.025858343 prediction 0.426876079193379 Functional Loss - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8221969 chr17:8221973 nonsynonymous SNV 0.994 3 25 hm5C_associated_SNPs_86873 0 0 0 0 2 ARHGEF15 chr17:8221980 5'GT 8221980 Upstream 8bp
chr11 57117364 57117364 1 + G T SARC 57117361 + 57117341 57117381 41 CGGGGCAGGATTTTGCCAAACTGGCGCGCACGGTGAGGACC CGGGGCAGGATTTTGCCAAACTGTCGCGCACGGTGAGGACC < 41bp 0.713436265653698 0.31223838503367 0.3910904 0.2605263 prediction 0.426872531307395 Functional Loss - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57117361 chr11:57117364 nonsynonymous SNV 0.974 3 24 hm5C_associated_SNPs_86874 0 0 0 0 1 P2RX3 chr11:57117372 5'GT 57117372 Upstream 9bp
chr3 47361190 47361190 1 + G A UCEC 47361187 + 47361167 47361207 41 CACCGGATTGTCTTAGCAGCCTCGATCCCGTATTTCCATGC CACCGGATTGTCTTAGCAGCCTCAATCCCGTATTTCCATGC < 41bp 0.784407847096446 0.570972106328129 0.41567162 0.31758037 prediction 0.426871481536634 Functional Loss - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47361187 chr3:47361190 synonymous SNV . 0 24 hm5C_associated_SNPs_86875 0 0 1 0 2 KLHL18 chr3:47361143 3'AG 47361143 Downstream 48bp
chr3 47361190 47361190 1 + G A UCEC 47361187 + 47361167 47361207 41 CACCGGATTGTCTTAGCAGCCTCGATCCCGTATTTCCATGC CACCGGATTGTCTTAGCAGCCTCAATCCCGTATTTCCATGC < 41bp 0.784407847096446 0.570972106328129 0.41567162 0.31758037 prediction 0.426871481536634 Functional Loss - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47361187 chr3:47361190 synonymous SNV . 0 24 hm5C_associated_SNPs_86875 0 0 1 0 2 KLHL18 chr3:47361273 5'GT 47361273 Upstream 84bp
chr7 73933816 73933816 1 + G A HNSC 73933813 + 73933793 73933833 41 CTCCCTGATTCCCAAGGGGTCACGGGACTGTGGCCTGCATG CTCCCTGATTCCCAAGGGGTCACAGGACTGTGGCCTGCATG < 41bp 0.71343259645501 0.458081653981462 0.7159291 0.44432077 prediction 0.426865192910021 Functional Loss - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73933813 chr7:73933816 nonsynonymous SNV 0.978 0 24 hm5C_associated_SNPs_86876 0 0 1 0 1 GTF2IRD1 chr7:73933739 3'AG 73933739 Downstream 78bp
chr1 220298619 220298619 1 + G A HNSC 220298616 + 220298596 220298636 41 TTGTTAAACTAGTGGAACAACACGGCAGTGATATCTGGTGG TTGTTAAACTAGTGGAACAACACAGCAGTGATATCTGGTGG < 41bp 0.786934896143204 0.573502528478553 0.07020837 0.09224039 prediction 0.426864735329302 Functional Loss - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220298616 chr1:220298619 nonsynonymous SNV 0.954 3 24 hm5C_associated_SNPs_86877 0 0 1 0 2 IARS2 chr1:220298579 3'AG 220298579 Downstream 41bp
chr1 220298619 220298619 1 + G A HNSC 220298616 + 220298596 220298636 41 TTGTTAAACTAGTGGAACAACACGGCAGTGATATCTGGTGG TTGTTAAACTAGTGGAACAACACAGCAGTGATATCTGGTGG < 41bp 0.786934896143204 0.573502528478553 0.07020837 0.09224039 prediction 0.426864735329302 Functional Loss - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220298616 chr1:220298619 nonsynonymous SNV 0.954 3 24 hm5C_associated_SNPs_86877 0 0 1 0 2 IARS2 chr1:220298681 5'GT 220298681 Upstream 63bp
chr13 115057234 115057234 1 + G T UCEC 115057232 + 115057212 115057252 41 AAAAAAAAGAGACAGATAAACAGAAGAAAATTGCAGAGAAA AAAAAAAAGAGACAGATAAACATAAGAAAATTGCAGAGAAA < 41bp 0.713430586516163 0.390335065102692 0.8667354 0.2692134 prediction 0.426861173032326 Functional Loss - UPF3A ENSG00000169062 CDS Human protein_coding chr13:115057232 chr13:115057234 nonsynonymous SNV 0.047 0 23 hm5C_associated_SNPs_86878 0 0 1 1 1 UPF3A chr13:115057267 5'GT 115057267 Upstream 34bp
chr8 92352656 92352656 1 + G A COAD 92352653 + 92352633 92352673 41 ATTCCCTCACCTAGAGCTCCCCCGATGAACATCCTCTCTGC ATTCCCTCACCTAGAGCTCCCCCAATGAACATCCTCTCTGC < 41bp 0.713427438766026 0.472552425002508 0.110931605 0.02685535 prediction 0.426854877532053 Functional Loss - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92352653 chr8:92352656 synonymous SNV . 0 24 hm5C_associated_SNPs_86880 0 0 0 0 1 SLC26A7 chr8:92352632 3'AG 92352632 Downstream 25bp
chr22 35723351 35723351 1 + G A rs202150969 35723348 + 35723328 35723368 41 TGACGGAGCTGGTGCCCACCCAGGCCGAGCCCGCAGACCTG TGACGGAGCTGGTGCCCACCCAGACCGAGCCCGCAGACCTG < 41bp 0.825211990168135 0.611784633792784 0.89806926 0.41364217 prediction 0.426854712750701 Functional Loss - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35723348 chr22:35723351 nonsynonymous SNV 0.976 0 24 hm5C_associated_SNPs_86881 0 0 1 0 2 TOM1 chr22:35723264 3'AG 35723264 Downstream 88bp
chr22 35723351 35723351 1 + G A rs202150969 35723348 + 35723328 35723368 41 TGACGGAGCTGGTGCCCACCCAGGCCGAGCCCGCAGACCTG TGACGGAGCTGGTGCCCACCCAGACCGAGCCCGCAGACCTG < 41bp 0.825211990168135 0.611784633792784 0.89806926 0.41364217 prediction 0.426854712750701 Functional Loss - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35723348 chr22:35723351 nonsynonymous SNV 0.976 0 24 hm5C_associated_SNPs_86881 0 0 1 0 2 TOM1 chr22:35723380 5'GT 35723380 Upstream 30bp
chr19 41920016 41920016 1 + C T STAD 41920013 + 41919993 41920033 41 GGCACGCACGTGGGGAGTGCCGCCGCCCTGGACAACACGGA GGCACGCACGTGGGGAGTGCCGCTGCCCTGGACAACACGGA < 41bp 0.736464335741312 0.523039713025453 0.3259518 0.35947406 prediction 0.426849245431718 Functional Loss - BCKDHA ENSG00000248098;ENSG00000255730 CDS Human other chr19:41920013 chr19:41920016 synonymous SNV . 0 24 hm5C_associated_SNPs_86882 0 0 1 0 2 BCKDHA chr19:41919954 3'AG 41919954 Downstream 63bp
chr19 41920016 41920016 1 + C T STAD 41920013 + 41919993 41920033 41 GGCACGCACGTGGGGAGTGCCGCCGCCCTGGACAACACGGA GGCACGCACGTGGGGAGTGCCGCTGCCCTGGACAACACGGA < 41bp 0.736464335741312 0.523039713025453 0.3259518 0.35947406 prediction 0.426849245431718 Functional Loss - BCKDHA ENSG00000248098;ENSG00000255730 CDS Human other chr19:41920013 chr19:41920016 synonymous SNV . 0 24 hm5C_associated_SNPs_86882 0 0 1 0 2 BCKDHA chr19:41920062 5'GT 41920062 Upstream 47bp
chr1 43827910 43827910 1 + A C CESC 43827909 + 43827889 43827929 41 CCATTACAAGGAGCTCATCTCAGGCCATGGCTTTGCACAGA CCATTACAAGGAGCTCATCTCCGGCCATGGCTTTGCACAGA < 41bp 0.713422249235115 0.444990070996937 0.91014206 0.89804953 prediction 0.42684449847023 Functional Loss - CDC20 ENSG00000117399 CDS Human protein_coding chr1:43827909 chr1:43827910 synonymous SNV . 0 22 hm5C_associated_SNPs_86883 0 0 1 0 2 CDC20 chr1:43827866 3'AG 43827866 Downstream 45bp
chr1 43827910 43827910 1 + A C CESC 43827909 + 43827889 43827929 41 CCATTACAAGGAGCTCATCTCAGGCCATGGCTTTGCACAGA CCATTACAAGGAGCTCATCTCCGGCCATGGCTTTGCACAGA < 41bp 0.713422249235115 0.444990070996937 0.91014206 0.89804953 prediction 0.42684449847023 Functional Loss - CDC20 ENSG00000117399 CDS Human protein_coding chr1:43827909 chr1:43827910 synonymous SNV . 0 22 hm5C_associated_SNPs_86883 0 0 1 0 2 CDC20 chr1:43827983 5'GT 43827983 Upstream 74bp
chr3 39178844 39178844 1 + C T UCEC 39178841 + 39178821 39178861 41 GGAGAAGGCTAACATGGAGGCTGCGCTGGGCAGCTTCATCC GGAGAAGGCTAACATGGAGGCTGTGCTGGGCAGCTTCATCC < 41bp 0.728651598845544 0.515232211129939 0.016697764 0.04446435 prediction 0.426838775431211 Functional Loss - TTC21A ENSG00000168026 CDS Human protein_coding chr3:39178841 chr3:39178844 nonsynonymous SNV 0.082 5 24 hm5C_associated_SNPs_86885 0 0 0 0 1 TTC21A chr3:39178878 5'GT 39178878 Upstream 35bp
chr15 80415123 80415123 1 + T C rs149918624 80415122 + 80415102 80415142 41 ATCTGTGGACAAAGCAGTACCTGAAACAGAAGATGTGCAGG ATCTGTGGACAAAGCAGTACCCGAAACAGAAGATGTGCAGG < 41bp 0.713417614919824 0.463320174100167 0.24468261 0.2083891 prediction 0.426835229839648 Functional Loss - ZFAND6 ENSG00000086666 CDS Human protein_coding chr15:80415122 chr15:80415123 synonymous SNV . 0 22 hm5C_associated_SNPs_86886 0 0 1 0 1 ZFAND6 chr15:80415042 3'AG 80415042 Downstream 82bp
chr17 65040977 65040977 1 + G A SKCM 65040974 + 65040954 65040994 41 CGCATCCCCATGGACGACAGCAAGACCTGCGGGCCCATCAC CGCATCCCCATGGACGACAGCAAAACCTGCGGGCCCATCAC < 41bp 0.811825534377542 0.598408916098763 0.2705808 0.18080917 prediction 0.426833236557558 Functional Loss - CACNG1 ENSG00000108878 CDS Human protein_coding chr17:65040974 chr17:65040977 synonymous SNV . 0 24 hm5C_associated_SNPs_86887 0 0 0 0 1 CACNG1 chr17:65041005 5'GT 65041005 Upstream 29bp
chr6 35438389 35438389 1 + G A BLCA 35438386 + 35438366 35438406 41 CTGGCTGTAGCTGTTGGTCACGTGAAGATGACAGACGATGA CTGGCTGTAGCTGTTGGTCACGTAAAGATGACAGACGATGA < 41bp 0.784258793076128 0.570842313612023 0.4860833 0.21805117 prediction 0.426832958928211 Functional Loss - RPL10A ENSG00000198755 CDS Human protein_coding chr6:35438386 chr6:35438389 synonymous SNV . 0 24 hm5C_associated_SNPs_86888 0 0 1 0 1 RPL10A chr6:35438357 3'AG 35438357 Downstream 33bp
chr7 102715804 102715804 1 + C T rs7798381 102715802 + 102715782 102715822 41 CTACTGCATTTACAGGCTGACCCGGGGTCGGCGGCGGGGCG CTACTGCATTTACAGGCTGACCTGGGGTCGGCGGCGGGGCG < 41bp 0.713416179646869 0.479964200708471 0.86014754 0.8294005 prediction 0.426832359293738 Functional Loss - ARMC10 ENSG00000170632 CDS Human protein_coding chr7:102715802 chr7:102715804 nonsynonymous SNV 0.021 2 23 hm5C_associated_SNPs_86889 0 0 0 0 1 ARMC10 chr7:102715858 5'GT 102715858 Upstream 55bp
chr1 11716049 11716049 1 + C T HNSC 11716046 + 11716026 11716066 41 CCCTCTGGAAACGCAAGTGCCTGCGAGAGGGCTTCATCACT CCCTCTGGAAACGCAAGTGCCTGTGAGAGGGCTTCATCACT < 41bp 0.71341281647788 0.495084739604811 0.07233685 0.046053946 prediction 0.426825632955761 Functional Loss - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11716046 chr1:11716049 stopgain 0.613 1 24 hm5C_associated_SNPs_86894 0 0 1 0 1 FBXO44 chr1:11715997 3'AG 11715997 Downstream 53bp
chr3 12854769 12854769 1 + C T UCEC 12854767 + 12854747 12854787 41 GCCCCAAGGAAATGGGTCCTCACGTGCCCAACGTGACCAGC GCCCCAAGGAAATGGGTCCTCATGTGCCCAACGTGACCAGC < 41bp 0.713412595610297 0.437132479978782 0.13609228 0.16433057 prediction 0.426825191220594 Functional Loss - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12854767 chr3:12854769 synonymous SNV . 0 23 hm5C_associated_SNPs_86895 0 0 0 0 1 CAND2 chr3:12854745 3'AG 12854745 Downstream 25bp
chr3 38039115 38039115 1 + C T STAD 38039112 + 38039092 38039132 41 TGGGCCGCAGGGTGGGCAGCCTGCGTGCCGCCACGCCCAGC TGGGCCGCAGGGTGGGCAGCCTGTGTGCCGCCACGCCCAGC < 41bp 0.735051305947316 0.521640233294577 0.23135081 0.117644966 prediction 0.426822145305477 Functional Loss - VILL ENSG00000136059 CDS Human protein_coding chr3:38039112 chr3:38039115 nonsynonymous SNV 0.044 0 24 hm5C_associated_SNPs_86898 0 0 1 0 1 VILL chr3:38039176 5'GT 38039176 Upstream 62bp
chr2 190535246 190535246 1 + C T LUSC 190535244 + 190535224 190535264 41 AAAAGCAAACTTGACTTTACCCCGAGGAATTGGTGAAAAAT AAAAGCAAACTTGACTTTACCCTGAGGAATTGGTGAAAAAT < 41bp 0.713407804794124 0.429479660548766 0.22063497 0.111450195 prediction 0.426815609588248 Functional Loss - ASNSD1 ENSG00000138381 CDS Human protein_coding chr2:190535244 chr2:190535246 stopgain 0.996 1 23 hm5C_associated_SNPs_86900 0 0 1 0 1 ASNSD1 chr2:190535167 3'AG 190535167 Downstream 80bp
chr12 121001191 121001191 1 + G T UCEC 121001188 + 121001168 121001208 41 TCTGCCTTCGATGAAGAAACCACGGAAGTTTGTTCTCTGGA TCTGCCTTCGATGAAGAAACCACTGAAGTTTGTTCTCTGGA < 41bp 0.713405825074229 0.306618975865861 0.20807925 0.06351423 prediction 0.426811650148458 Functional Loss - RNF10 ENSG00000022840 CDS Human protein_coding chr12:121001188 chr12:121001191 synonymous SNV . 0 24 hm5C_associated_SNPs_86902 0 0 1 1 1 RNF10 chr12:121001150 3'AG 121001150 Downstream 42bp
chr12 121001190 121001190 1 + C T UCEC 121001188 + 121001168 121001208 41 TCTGCCTTCGATGAAGAAACCACGGAAGTTTGTTCTCTGGA TCTGCCTTCGATGAAGAAACCATGGAAGTTTGTTCTCTGGA < 41bp 0.713405825074229 0.430472136575369 0.20807925 0.14466962 prediction 0.426811650148458 Functional Loss - RNF10 ENSG00000022840 CDS Human protein_coding chr12:121001188 chr12:121001190 nonsynonymous SNV 0.199 0 23 hm5C_associated_SNPs_86903 0 0 1 1 1 RNF10 chr12:121001150 3'AG 121001150 Downstream 41bp
chr1 217915374 217915374 1 + C T GBM 217915372 + 217915352 217915392 41 GAGAAGAGAAGAAGGCTAACCTCGAAAGGGAAGAGAAGAAA GAGAAGAGAAGAAGGCTAACCTTGAAAGGGAAGAGAAGAAA < 41bp 0.877646745874872 0.664246013187407 0.8882334 0.28301352 prediction 0.426801465374931 Functional Loss - SPATA17 ENSG00000162814 CDS Human protein_coding chr1:217915372 chr1:217915374 synonymous SNV . 0 23 hm5C_associated_SNPs_86907 0 0 0 2 2 SPATA17 chr1:217915317 3'AG 217915317 Downstream 58bp
chr1 217915374 217915374 1 + C T GBM 217915372 + 217915352 217915392 41 GAGAAGAGAAGAAGGCTAACCTCGAAAGGGAAGAGAAGAAA GAGAAGAGAAGAAGGCTAACCTTGAAAGGGAAGAGAAGAAA < 41bp 0.877646745874872 0.664246013187407 0.8882334 0.28301352 prediction 0.426801465374931 Functional Loss - SPATA17 ENSG00000162814 CDS Human protein_coding chr1:217915372 chr1:217915374 synonymous SNV . 0 23 hm5C_associated_SNPs_86907 0 0 0 2 2 SPATA17 chr1:217915440 5'GT 217915440 Upstream 67bp
chr22 38044341 38044341 1 - C T rs118183308 38044344 - 38044324 38044364 41 TGCTCCTCGGCCAGCCGTGCCAGGAACTTCATCAGGTACCT TGCTCCTCGGCCAGCCGTGCCAGAAACTTCATCAGGTACCT < 41bp 0.803125278175102 0.58972592474187 0.81839335 0.55642986 prediction 0.426798706866464 Functional Loss - SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38044344 chr22:38044341 synonymous SNV . 0 24 hm5C_associated_SNPs_86908 0 0 0 0 2 SH3BP1 chr22:38044330 5'GT 38044330 Upstream 12bp
chr22 38044341 38044341 1 - C T rs118183308 38044344 - 38044324 38044364 41 TGCTCCTCGGCCAGCCGTGCCAGGAACTTCATCAGGTACCT TGCTCCTCGGCCAGCCGTGCCAGAAACTTCATCAGGTACCT < 41bp 0.803125278175102 0.58972592474187 0.81839335 0.55642986 prediction 0.426798706866464 Functional Loss - SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38044344 chr22:38044341 synonymous SNV . 0 24 hm5C_associated_SNPs_86908 0 0 0 0 2 SH3BP1 chr22:38044429 3'AG 38044429 Downstream 89bp
chr13 53617325 53617325 1 + T C STAD 53617324 + 53617304 53617344 41 TTCGCCGAGAAATCGTGGCTCTGAAGACCAAGCTGAAAGAG TTCGCCGAGAAATCGTGGCTCCGAAGACCAAGCTGAAAGAG < 41bp 0.713393623080978 0.463277770824237 0.04950869 0.09657365 prediction 0.426787246161957 Functional Loss - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53617324 chr13:53617325 nonsynonymous SNV 0.919 5 22 hm5C_associated_SNPs_86911 0 0 0 0 2 OLFM4 chr13:53617240 3'AG 53617240 Downstream 86bp
chr13 53617325 53617325 1 + T C STAD 53617324 + 53617304 53617344 41 TTCGCCGAGAAATCGTGGCTCTGAAGACCAAGCTGAAAGAG TTCGCCGAGAAATCGTGGCTCCGAAGACCAAGCTGAAAGAG < 41bp 0.713393623080978 0.463277770824237 0.04950869 0.09657365 prediction 0.426787246161957 Functional Loss - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53617324 chr13:53617325 nonsynonymous SNV 0.919 5 22 hm5C_associated_SNPs_86911 0 0 0 0 2 OLFM4 chr13:53617399 5'GT 53617399 Upstream 75bp
chr7 883097 883097 1 + G T LUSC 883095 + 883075 883115 41 CGAGCGCAAGGACGTGCTCACGGCGCACCCCGCGGCCCCCG CGAGCGCAAGGACGTGCTCACGTCGCACCCCGCGGCCCCCG < 41bp 0.910889536728662 0.697495914201803 0.8963212 0.4087243 prediction 0.426787245053718 Functional Loss - SUN1 ENSG00000164828 CDS Human protein_coding chr7:883095 chr7:883097 nonsynonymous SNV 0.007 1 23 hm5C_associated_SNPs_86912 0 0 1 0 1 SUN1 chr7:883157 5'GT 883157 Upstream 61bp
chr9 104075208 104075208 1 + G A rs145880799 104075205 + 104075185 104075225 41 TCTGAGTATCGGAACCACTGCTCGGACGTGATTGCTGGTTT TCTGAGTATCGGAACCACTGCTCAGACGTGATTGCTGGTTT < 41bp 0.795251828298422 0.581863510829232 0.37478507 0.24558526 prediction 0.42677663493838 Functional Loss - PLPPR1 ENSG00000148123 CDS Human protein_coding chr9:104075205 chr9:104075208 synonymous SNV . 0 24 hm5C_associated_SNPs_86914 0 0 1 0 1 PLPPR1 chr9:104075256 5'GT 104075256 Upstream 49bp
chr6 27220668 27220668 1 + C T LUSC 27220666 + 27220646 27220686 41 ACAGCTGAGGAGCACAGAACCTCAACTGTCTGGTGTGGGTG ACAGCTGAGGAGCACAGAACCTTAACTGTCTGGTGTGGGTG < 41bp 0.713387890777642 0.423449391000126 0.18476766 0.20844272 prediction 0.426775781555284 Functional Loss - PRSS16 ENSG00000112812 CDS Human protein_coding chr6:27220666 chr6:27220668 stopgain 0.034 0 23 hm5C_associated_SNPs_86917 0 0 1 0 1 PRSS16 chr6:27220587 3'AG 27220587 Downstream 82bp
chr9 98229649 98229649 1 - C T UCEC 98229652 - 98229632 98229672 41 GGTCAGCCTTTATGGCACCACCCGAGTGAGAGACGGGCTGG GGTCAGCCTTTATGGCACCACCCAAGTGAGAGACGGGCTGG < 41bp 0.713387679047736 0.488191328647737 0.32479638 0.44469184 prediction 0.426775358095472 Functional Loss - PTCH1 ENSG00000185920 CDS Human protein_coding chr9:98229652 chr9:98229649 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_86918 0 0 0 0 1 PTCH1 chr9:98229707 3'AG 98229707 Downstream 59bp
chr18 63477206 63477206 1 + G A rs17075229 63477203 + 63477183 63477223 41 AAATTTTTGGATGGCCCATACACGGCAGGAGTTCCCGAAAT AAATTTTTGGATGGCCCATACACAGCAGGAGTTCCCGAAAT < 41bp 0.713383566445054 0.460721576058385 0.09586313 0.03295502 prediction 0.426767132890107 Functional Loss - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63477203 chr18:63477206 synonymous SNV . 0 24 hm5C_associated_SNPs_86921 0 0 0 0 1 CDH7 chr18:63477234 5'GT 63477234 Upstream 29bp
chr17 38610261 38610261 1 + T C UCEC 38610260 + 38610240 38610280 41 AGCCGCACCCACGAGGACCTCTACATCATCCCCATCCCCAA AGCCGCACCCACGAGGACCTCCACATCATCCCCATCCCCAA < 41bp 0.843509771829102 0.630126621424879 0.92049265 0.23346674 prediction 0.426766300808446 Functional Loss - IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38610260 chr17:38610261 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_86923 0 0 1 0 2 IGFBP4 chr17:38610180 3'AG 38610180 Downstream 82bp
chr17 38610261 38610261 1 + T C UCEC 38610260 + 38610240 38610280 41 AGCCGCACCCACGAGGACCTCTACATCATCCCCATCCCCAA AGCCGCACCCACGAGGACCTCCACATCATCCCCATCCCCAA < 41bp 0.843509771829102 0.630126621424879 0.92049265 0.23346674 prediction 0.426766300808446 Functional Loss - IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38610260 chr17:38610261 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_86923 0 0 1 0 2 IGFBP4 chr17:38610314 5'GT 38610314 Upstream 54bp
chr7 100274372 100274372 1 + C T CESC 100274370 + 100274350 100274390 41 AGATGAGGACCCGGAGGACCCTCCGTGGGCACCTGGCAAAG AGATGAGGACCCGGAGGACCCTTCGTGGGCACCTGGCAAAG < 41bp 0.836076696632991 0.622698335251392 0.7821813 0.38959172 prediction 0.426756722763198 Functional Loss - GNB2 ENSG00000172354 CDS Human protein_coding chr7:100274370 chr7:100274372 synonymous SNV . 0 23 hm5C_associated_SNPs_86927 0 0 1 0 2 GNB2 chr7:100274316 3'AG 100274316 Downstream 57bp
chr7 100274372 100274372 1 + C T CESC 100274370 + 100274350 100274390 41 AGATGAGGACCCGGAGGACCCTCCGTGGGCACCTGGCAAAG AGATGAGGACCCGGAGGACCCTTCGTGGGCACCTGGCAAAG < 41bp 0.836076696632991 0.622698335251392 0.7821813 0.38959172 prediction 0.426756722763198 Functional Loss - GNB2 ENSG00000172354 CDS Human protein_coding chr7:100274370 chr7:100274372 synonymous SNV . 0 23 hm5C_associated_SNPs_86927 0 0 1 0 2 GNB2 chr7:100274422 5'GT 100274422 Upstream 51bp
chr7 128490876 128490876 1 + G A rs376078394 128490873 + 128490853 128490893 41 GCAGGAGAGGTGCGGATGCCCTCGGGGAAGACGGCACGGCC GCAGGAGAGGTGCGGATGCCCTCAGGGAAGACGGCACGGCC < 41bp 0.788563245542199 0.575186313338567 0.15870714 0.038610518 prediction 0.426753864407263 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128490873 chr7:128490876 synonymous SNV . 0 24 hm5C_associated_SNPs_86929 1 0 1 0 1 FLNC chr7:128490857 3'AG 128490857 Downstream 20bp
chr17 72945374 72945374 1 + G A SKCM 72945371 + 72945351 72945391 41 TGCCTGCATTTGGCATACACCCGGAGTTTGAGAACGGGCTA TGCCTGCATTTGGCATACACCCGAAGTTTGAGAACGGGCTA < 41bp 0.778963866886181 0.565593000409948 0.16915095 0.024105012 prediction 0.426741732952466 Functional Loss - OTOP3 ENSG00000182938 CDS Human protein_coding chr17:72945371 chr17:72945374 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_86932 0 0 0 0 1 OTOP3 chr17:72945341 3'AG 72945341 Downstream 34bp
chr4 119444539 119444539 1 + C T rs530471626 119444536 + 119444516 119444556 41 CTACTAGTTCTTCATTCAAACACCGGATTAAAGAGCAGGAA CTACTAGTTCTTCATTCAAACACTGGATTAAAGAGCAGGAA < 41bp 0.713370406930142 0.497374912368228 0.052166462 0.032214195 prediction 0.426740813860284 Functional Loss - CEP170P1 ENSG00000154608 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr4:119444536 chr4:119444539 . . 0 24 hm5C_associated_SNPs_86933 0 0 0 0 2 CEP170P1 chr4:119444474 3'AG 119444474 Downstream 66bp
chr4 119444539 119444539 1 + C T rs530471626 119444536 + 119444516 119444556 41 CTACTAGTTCTTCATTCAAACACCGGATTAAAGAGCAGGAA CTACTAGTTCTTCATTCAAACACTGGATTAAAGAGCAGGAA < 41bp 0.713370406930142 0.497374912368228 0.052166462 0.032214195 prediction 0.426740813860284 Functional Loss - CEP170P1 ENSG00000154608 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr4:119444536 chr4:119444539 . . 0 24 hm5C_associated_SNPs_86933 0 0 0 0 2 CEP170P1 chr4:119444600 5'GT 119444600 Upstream 62bp
chr3 23963159 23963159 1 + G A rs193020435 23963156 + 23963136 23963176 41 GCTCACTGCAACCTCTGTCTCCCGGGTTTGAGCAATTCTTC GCTCACTGCAACCTCTGTCTCCCAGGTTTGAGCAATTCTTC < 41bp 0.783849887596276 0.570479676959404 0.8012315 0.11942151 prediction 0.426740421273744 Functional Loss - RPL15 ENSG00000174748 CDS Human protein_coding chr3:23963156 chr3:23963159 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_86934 0 0 1 0 1 RPL15 chr3:23963089 3'AG 23963089 Downstream 71bp
chr17 7350413 7350413 1 + C T STAD 7350410 + 7350390 7350430 41 GACATTAGCGTCGTGGTGTCCTCCGACGGCTCCGTGCGTTG GACATTAGCGTCGTGGTGTCCTCTGACGGCTCCGTGCGTTG < 41bp 0.713368549950964 0.491023415923439 0.097794175 0.14784569 prediction 0.426737099901928 Functional Loss - CHRNB1 ENSG00000170175 CDS Human protein_coding chr17:7350410 chr17:7350413 synonymous SNV . 0 24 hm5C_associated_SNPs_86935 0 0 0 0 2 CHRNB1 chr17:7350362 3'AG 7350362 Downstream 52bp
chr17 7350413 7350413 1 + C T STAD 7350410 + 7350390 7350430 41 GACATTAGCGTCGTGGTGTCCTCCGACGGCTCCGTGCGTTG GACATTAGCGTCGTGGTGTCCTCTGACGGCTCCGTGCGTTG < 41bp 0.713368549950964 0.491023415923439 0.097794175 0.14784569 prediction 0.426737099901928 Functional Loss - CHRNB1 ENSG00000170175 CDS Human protein_coding chr17:7350410 chr17:7350413 synonymous SNV . 0 24 hm5C_associated_SNPs_86935 0 0 0 0 2 CHRNB1 chr17:7350470 5'GT 7350470 Upstream 58bp
chr1 111825312 111825312 1 + G A UCEC 111825309 + 111825289 111825329 41 TGACTGGGAGTACCCCGGCTCTCGTGTGAGCCCTCCTCAGG TGACTGGGAGTACCCCGGCTCTCATGTGAGCCCTCCTCAGG < 41bp 0.757769317707071 0.544401627130572 0.08855766 0.06528866 prediction 0.426735381152997 Functional Loss - CHIAP2 ENSG00000203878 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:111825309 chr1:111825312 . . 0 24 hm5C_associated_SNPs_86936 0 0 0 0 1 CHIAP2 chr1:111825358 5'GT 111825358 Upstream 47bp
chr1 171482181 171482181 1 + C T CESC 171482179 + 171482159 171482199 41 TCTTGGAAAAGTCGGTATTTCACGGCGTATGCCTCCACCTG TCTTGGAAAAGTCGGTATTTCATGGCGTATGCCTCCACCTG < 41bp 0.713362601612663 0.448141197531407 0.8946456 0.8043883 prediction 0.426725203225326 Functional Loss - PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171482179 chr1:171482181 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_86941 0 0 1 0 2 PRRC2C chr1:171482134 3'AG 171482134 Downstream 48bp
chr1 171482181 171482181 1 + C T CESC 171482179 + 171482159 171482199 41 TCTTGGAAAAGTCGGTATTTCACGGCGTATGCCTCCACCTG TCTTGGAAAAGTCGGTATTTCATGGCGTATGCCTCCACCTG < 41bp 0.713362601612663 0.448141197531407 0.8946456 0.8043883 prediction 0.426725203225326 Functional Loss - PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171482179 chr1:171482181 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_86941 0 0 1 0 2 PRRC2C chr1:171482140 3'AG 171482140 Downstream 42bp
chr2 131103212 131103212 1 + G T BLCA 131103209 + 131103189 131103229 41 ATGAAGTGGGGGCACTGGTGCGAGCCTGCAAAGCCAACGGC ATGAAGTGGGGGCACTGGTGCGATCCTGCAAAGCCAACGGC < 41bp 0.713361049010577 0.305395150861685 0.48448122 0.21560544 prediction 0.426722098021154 Functional Loss - IMP4 ENSG00000136718 CDS Human protein_coding chr2:131103209 chr2:131103212 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_86942 0 0 1 0 2 IMP4 chr2:131103140 3'AG 131103140 Downstream 73bp
chr2 131103212 131103212 1 + G T BLCA 131103209 + 131103189 131103229 41 ATGAAGTGGGGGCACTGGTGCGAGCCTGCAAAGCCAACGGC ATGAAGTGGGGGCACTGGTGCGATCCTGCAAAGCCAACGGC < 41bp 0.713361049010577 0.305395150861685 0.48448122 0.21560544 prediction 0.426722098021154 Functional Loss - IMP4 ENSG00000136718 CDS Human protein_coding chr2:131103209 chr2:131103212 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_86942 0 0 1 0 2 IMP4 chr2:131103272 5'GT 131103272 Upstream 61bp
chr12 81112140 81112140 1 + G T LUSC 81112137 + 81112117 81112157 41 TTGTGTGTCTTGTATTATAGCCCGAATGTAACAGTCCTGTC TTGTGTGTCTTGTATTATAGCCCTAATGTAACAGTCCTGTC < 41bp 0.71335753469181 0.333439057669415 0.048566937 0.07862285 prediction 0.42671506938362 Functional Loss - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81112137 chr12:81112140 stopgain 0.922 1 24 hm5C_associated_SNPs_86945 0 0 0 0 2 MYF5 chr12:81112137 3'AG 81112137 Downstream 4bp
chr12 81112140 81112140 1 + G T LUSC 81112137 + 81112117 81112157 41 TTGTGTGTCTTGTATTATAGCCCGAATGTAACAGTCCTGTC TTGTGTGTCTTGTATTATAGCCCTAATGTAACAGTCCTGTC < 41bp 0.71335753469181 0.333439057669415 0.048566937 0.07862285 prediction 0.42671506938362 Functional Loss - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81112137 chr12:81112140 stopgain 0.922 1 24 hm5C_associated_SNPs_86945 0 0 0 0 2 MYF5 chr12:81112212 5'GT 81112212 Upstream 73bp
chr7 6647637 6647637 1 + G A STAD 6647634 + 6647614 6647654 41 GTCCCGTGCAGCAGTCGCCTCACGCCGCGCTCCCCCCGGGG GTCCCGTGCAGCAGTCGCCTCACACCGCGCTCCCCCCGGGG < 41bp 0.713357470423143 0.458564046009592 0.14249736 0.09280914 prediction 0.426714940846286 Functional Loss - C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6647634 chr7:6647637 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_86946 0 0 1 0 1 C7orf26 chr7:6647591 3'AG 6647591 Downstream 47bp
chr5 167943903 167943903 1 + G A LUAD 167943900 + 167943880 167943920 41 TCTTCTCCTTTGACAAAATGCTAGATGACAGAGGAAATACA TCTTCTCCTTTGACAAAATGCTAAATGACAGAGGAAATACA < 41bp 0.742384680896049 0.529029483925251 0.39769173 0.55833465 prediction 0.426710393941597 Functional Loss - RARS ENSG00000113643 CDS Human protein_coding chr5:167943900 chr5:167943903 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_86947 0 0 1 0 1 RARS chr5:167943955 5'GT 167943955 Upstream 53bp
chr4 160274036 160274036 1 + G A BLCA 160274033 + 160274013 160274053 41 GGCAGGATGGAGAGGCGGACCATGATTGAACCTGATCAGTA GGCAGGATGGAGAGGCGGACCATAATTGAACCTGATCAGTA < 41bp 0.713352288564529 0.477065414544693 0.09840503 0.11610255 prediction 0.426704577129059 Functional Loss - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160274033 chr4:160274036 nonsynonymous SNV 0.627 0 24 hm5C_associated_SNPs_86949 0 0 0 0 1 RAPGEF2 chr4:160274062 5'GT 160274062 Upstream 27bp
chr15 90164726 90164726 1 + G A rs201761582 90164723 + 90164703 90164743 41 CCCCTCAGAAAAGGGTTCAGCTCGAATGAAAAAGCGTTCAA CCCCTCAGAAAAGGGTTCAGCTCAAATGAAAAAGCGTTCAA < 41bp 0.792453786722516 0.579104651959927 0.2842341 0.27574983 prediction 0.426698269525179 Functional Loss - TICRR ENSG00000140534 CDS Human protein_coding chr15:90164723 chr15:90164726 nonsynonymous SNV 0.044 0 24 hm5C_associated_SNPs_86953 0 0 1 0 1 TICRR chr15:90164781 5'GT 90164781 Upstream 56bp
chr3 156232214 156232214 1 + G A UCEC 156232211 + 156232191 156232231 41 ATGGCGATGTACTGGGGCACCTCGAGATGGAGTGCTATGGA ATGGCGATGTACTGGGGCACCTCAAGATGGAGTGCTATGGA < 41bp 0.761769914951137 0.548423501841719 0.8998649 0.8783126 prediction 0.426692826218836 Functional Loss - KCNAB1 ENSG00000169282 CDS Human protein_coding chr3:156232211 chr3:156232214 synonymous SNV . 0 24 hm5C_associated_SNPs_86954 0 0 0 0 2 KCNAB1 chr3:156232153 3'AG 156232153 Downstream 62bp
chr3 156232214 156232214 1 + G A UCEC 156232211 + 156232191 156232231 41 ATGGCGATGTACTGGGGCACCTCGAGATGGAGTGCTATGGA ATGGCGATGTACTGGGGCACCTCAAGATGGAGTGCTATGGA < 41bp 0.761769914951137 0.548423501841719 0.8998649 0.8783126 prediction 0.426692826218836 Functional Loss - KCNAB1 ENSG00000169282 CDS Human protein_coding chr3:156232211 chr3:156232214 synonymous SNV . 0 24 hm5C_associated_SNPs_86954 0 0 0 0 2 KCNAB1 chr3:156232238 5'GT 156232238 Upstream 25bp
chr11 9406349 9406349 1 + T C rs4606477 9406348 + 9406328 9406368 41 TATCGAGGCCCTGCGGGGCACTATGGACCCAGCCCTGCGTG TATCGAGGCCCTGCGGGGCACCATGGACCCAGCCCTGCGTG < 41bp 0.732612125628155 0.519266886917353 0.13473105 0.12818855 prediction 0.426690477421603 Functional Loss - IPO7 ENSG00000205339 CDS Human protein_coding chr11:9406348 chr11:9406349 synonymous SNV . 0 22 hm5C_associated_SNPs_86956 0 0 1 0 1 IPO7 chr11:9406394 5'GT 9406394 Upstream 46bp
chr3 44938227 44938227 1 + C T COAD 44938224 + 44938204 44938244 41 GAGAAAAATGTCCTGGACTGCTGCATTTCCCTGCTGACTGA GAGAAAAATGTCCTGGACTGCTGTATTTCCCTGCTGACTGA < 41bp 0.74524247628685 0.531900483823036 0.049966246 0.06373891 prediction 0.426683984927627 Functional Loss - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44938224 chr3:44938227 synonymous SNV . 0 24 hm5C_associated_SNPs_86959 0 0 0 3 2 TGM4 chr3:44938201 3'AG 44938201 Downstream 27bp
chr3 44938227 44938227 1 + C T COAD 44938224 + 44938204 44938244 41 GAGAAAAATGTCCTGGACTGCTGCATTTCCCTGCTGACTGA GAGAAAAATGTCCTGGACTGCTGTATTTCCCTGCTGACTGA < 41bp 0.74524247628685 0.531900483823036 0.049966246 0.06373891 prediction 0.426683984927627 Functional Loss - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44938224 chr3:44938227 synonymous SNV . 0 24 hm5C_associated_SNPs_86959 0 0 0 3 2 TGM4 chr3:44938308 5'GT 44938308 Upstream 82bp
chr6 80750370 80750370 1 + G T LUAD 80750367 + 80750347 80750387 41 CTGAAGAAATGAAATATGTTCTGGGCCAACTTGTTGGTCTG CTGAAGAAATGAAATATGTTCTGTGCCAACTTGTTGGTCTG < 41bp 0.713340319774457 0.331836164210886 0.5547472 0.103717506 prediction 0.426680639548914 Functional Loss - TTK ENSG00000112742 CDS Human protein_coding chr6:80750367 chr6:80750370 nonsynonymous SNV 0.972 4 24 hm5C_associated_SNPs_86960 0 0 1 0 2 TTK chr6:80750323 3'AG 80750323 Downstream 48bp
chr6 80750370 80750370 1 + G T LUAD 80750367 + 80750347 80750387 41 CTGAAGAAATGAAATATGTTCTGGGCCAACTTGTTGGTCTG CTGAAGAAATGAAATATGTTCTGTGCCAACTTGTTGGTCTG < 41bp 0.713340319774457 0.331836164210886 0.5547472 0.103717506 prediction 0.426680639548914 Functional Loss - TTK ENSG00000112742 CDS Human protein_coding chr6:80750367 chr6:80750370 nonsynonymous SNV 0.972 4 24 hm5C_associated_SNPs_86960 0 0 1 0 2 TTK chr6:80750420 5'GT 80750420 Upstream 51bp
chrX 47069441 47069441 1 + C T UCEC 47069438 + 47069418 47069458 41 CGACCACAGACCTGGGCTGACTGCGTGACCTGGGCCTGCCA CGACCACAGACCTGGGCTGACTGTGTGACCTGGGCCTGCCA < 41bp 0.749469627349012 0.536130971838722 0.17514715 0.077779114 prediction 0.426677311020578 Functional Loss - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47069438 chrX:47069441 synonymous SNV . 0 24 hm5C_associated_SNPs_86961 0 0 1 0 1 UBA1 chrX:47069522 5'GT 47069522 Upstream 82bp
chr6 36262089 36262089 1 + C T rs187453727 36262087 + 36262067 36262107 41 GGGACTGCCCGGCCATCTTCCACGACTTCCGCATGTTCAAC GGGACTGCCCGGCCATCTTCCATGACTTCCGCATGTTCAAC < 41bp 0.86261405083859 0.64927851646025 0.111694545 0.19004413 prediction 0.426671068756681 Functional Loss - PNPLA1 ENSG00000180316 CDS Human protein_coding chr6:36262087 chr6:36262089 synonymous SNV . 0 23 hm5C_associated_SNPs_86964 1 0 0 0 1 PNPLA1 chr6:36262176 5'GT 36262176 Upstream 88bp
chr16 29466740 29466740 1 + C T UCEC 29466738 + 29466718 29466758 41 GGGAGATGGTGCTCGTCGTGCACGGCTTCCCGTCCTCCGTG GGGAGATGGTGCTCGTCGTGCATGGCTTCCCGTCCTCCGTG < 41bp 0.822615145914136 0.609279641562731 0.3987527 0.39840508 prediction 0.42667100870281 Functional Loss - SLX1A;SLX1B ENSG00000181625 CDS Human protein_coding chr16:29466738 chr16:29466740 synonymous SNV . 0 23 hm5C_associated_SNPs_86965 0 0 0 0 2 SLX1A;SLX1B chr16:29466719 3'AG 29466719 Downstream 22bp
chr16 29466740 29466740 1 + C T UCEC 29466738 + 29466718 29466758 41 GGGAGATGGTGCTCGTCGTGCACGGCTTCCCGTCCTCCGTG GGGAGATGGTGCTCGTCGTGCATGGCTTCCCGTCCTCCGTG < 41bp 0.822615145914136 0.609279641562731 0.3987527 0.39840508 prediction 0.42667100870281 Functional Loss - SLX1A;SLX1B ENSG00000181625 CDS Human protein_coding chr16:29466738 chr16:29466740 synonymous SNV . 0 23 hm5C_associated_SNPs_86965 0 0 0 0 2 SLX1A;SLX1B chr16:29466770 5'GT 29466770 Upstream 31bp
chr1 156145425 156145425 1 + G T SARC 156145423 + 156145403 156145443 41 GCCCCATGAGCAGGAGCCTTCGGCCTCAGAGCCGCCCGCAA GCCCCATGAGCAGGAGCCTTCGTCCTCAGAGCCGCCCGCAA < 41bp 0.713333231775458 0.349671146350845 0.857867 0.028975546 prediction 0.426666463550916 Functional Loss - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156145423 chr1:156145425 synonymous SNV . 0 23 hm5C_associated_SNPs_86966 0 0 0 0 2 SEMA4A chr1:156145347 3'AG 156145347 Downstream 79bp
chr1 156145425 156145425 1 + G T SARC 156145423 + 156145403 156145443 41 GCCCCATGAGCAGGAGCCTTCGGCCTCAGAGCCGCCCGCAA GCCCCATGAGCAGGAGCCTTCGTCCTCAGAGCCGCCCGCAA < 41bp 0.713333231775458 0.349671146350845 0.857867 0.028975546 prediction 0.426666463550916 Functional Loss - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156145423 chr1:156145425 synonymous SNV . 0 23 hm5C_associated_SNPs_86966 0 0 0 0 2 SEMA4A chr1:156145447 5'GT 156145447 Upstream 23bp
chrX 150839591 150839591 1 + G T UCEC 150839588 + 150839568 150839608 41 TGAAGAAGTTGAAGGAGCAGCTAGAAGAGAGGACTTGGTTG TGAAGAAGTTGAAGGAGCAGCTATAAGAGAGGACTTGGTTG < 41bp 0.713332260325346 0.321552069254487 0.48385197 0.87974536 prediction 0.426664520650692 Functional Loss - PASD1 ENSG00000166049 CDS Human protein_coding chrX:150839588 chrX:150839591 stopgain 0.021 0 24 hm5C_associated_SNPs_86968 0 0 0 0 2 PASD1 chrX:150839510 3'AG 150839510 Downstream 82bp
chrX 150839591 150839591 1 + G T UCEC 150839588 + 150839568 150839608 41 TGAAGAAGTTGAAGGAGCAGCTAGAAGAGAGGACTTGGTTG TGAAGAAGTTGAAGGAGCAGCTATAAGAGAGGACTTGGTTG < 41bp 0.713332260325346 0.321552069254487 0.48385197 0.87974536 prediction 0.426664520650692 Functional Loss - PASD1 ENSG00000166049 CDS Human protein_coding chrX:150839588 chrX:150839591 stopgain 0.021 0 24 hm5C_associated_SNPs_86968 0 0 0 0 2 PASD1 chrX:150839668 5'GT 150839668 Upstream 78bp
chr1 156555582 156555582 1 + T C PRAD 156555581 + 156555561 156555601 41 ACGTTTACCAAGCACACGCCCTGCAGAGGGACAGTCCTCGG ACGTTTACCAAGCACACGCCCCGCAGAGGGACAGTCCTCGG < 41bp 0.814909285333802 0.601579165366604 0.07717642 0.0129721165 prediction 0.426660239934395 Functional Loss - TTC24 ENSG00000187862 CDS Human protein_coding chr1:156555581 chr1:156555582 nonsynonymous SNV 0.009 0 22 hm5C_associated_SNPs_86969 0 0 0 0 1 TTC24 chr1:156555618 5'GT 156555618 Upstream 37bp
chr22 25621000 25621000 1 + G A SKCM 25620997 + 25620977 25621017 41 AGGTTCTGTCCTAGTGCAGGCTGGACCGTAAGTACCTGGGT AGGTTCTGTCCTAGTGCAGGCTGAACCGTAAGTACCTGGGT < 41bp 0.804147543118008 0.590817555379977 0.21132672 0.19699419 prediction 0.426659975476061 Functional Loss - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25620997 chr22:25621000 nonsynonymous SNV 0.994 5 24 hm5C_associated_SNPs_86970 0 0 0 0 1 CRYBB2 chr22:25621003 5'GT 25621003 Upstream 4bp
chr19 41594483 41594483 1 + G T ESCA 41594479 + 41594459 41594499 41 AGAGCAGGGGGAAGCTGCCTCCGGGACCCACCCCATTGCCC AGAGCAGGGGGAAGCTGCCTCCGGTACCCACCCCATTGCCC < 41bp 0.736018875960577 0.522690879305978 0.8905225 0.5050711 prediction 0.426655993309197 Functional Loss - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41594479 chr19:41594483 nonsynonymous SNV 0.155 3 25 hm5C_associated_SNPs_86972 0 0 0 0 1 CYP2A13 chr19:41594556 5'GT 41594556 Upstream 74bp
chr7 143657134 143657134 1 + G T HNSC 143657131 + 143657111 143657151 41 CCTGTCCAGTGACTGGGACACTCGGGTCTCCCTGTTTGTCC CCTGTCCAGTGACTGGGACACTCTGGTCTCCCTGTTTGTCC < 41bp 0.924136180814769 0.710810341415647 0.4887755 0.17478493 prediction 0.426651678798243 Functional Loss - OR2F1 ENSG00000213215 CDS Human lincRNA chr7:143657131 chr7:143657134 nonsynonymous SNV 0.069 1 24 hm5C_associated_SNPs_86975 0 0 0 0 1 OR2F1 chr7:143657041 3'AG 143657041 Downstream 94bp
chr11 119029409 119029409 1 + C T LUSC 119029407 + 119029387 119029427 41 TCCATGCTGTTCCTCATGTTCGCCGCCCTCATGCCAACTGT TCCATGCTGTTCCTCATGTTCGTCGCCCTCATGCCAACTGT < 41bp 0.713322076683322 0.447672411788513 0.22045684 0.3002354 prediction 0.426644153366644 Functional Loss - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119029407 chr11:119029409 nonsynonymous SNV 0.977 1 23 hm5C_associated_SNPs_86980 0 0 0 0 1 ABCG4 chr11:119029435 5'GT 119029435 Upstream 27bp
chr5 137673987 137673987 1 + A C rs373425900 137673983 + 137673963 137674003 41 TCCGGCCGCGGCCCTGGGAGCTGGAGGAACCGCGGTAGGTG TCCGGCCGCGGCCCTGGGAGCTGGCGGAACCGCGGTAGGTG < 41bp 0.921994061088517 0.708672204541231 0.9082567 0.8983494 prediction 0.426643713094572 Functional Loss - CDC25C;FAM53C ENSG00000120709;ENSG00000158402 UTR5 Human other chr5:137673983 chr5:137673987 . . 0 25 hm5C_associated_SNPs_86981 0 0 1 0 1 CDC25C;FAM53C chr5:137673996 5'GT 137673996 Upstream 10bp
chr12 7069304 7069304 1 + C T HNSC 7069301 + 7069281 7069321 41 CCATCCAGATGGTGCGGGCGCAGCGCTCGGGCATGGTGCAG CCATCCAGATGGTGCGGGCGCAGTGCTCGGGCATGGTGCAG < 41bp 0.718559400943066 0.505238617341851 0.17450258 0.29341707 prediction 0.426641567202431 Functional Loss - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7069301 chr12:7069304 nonsynonymous SNV 0.745 5 24 hm5C_associated_SNPs_86983 0 0 0 0 2 PTPN6 chr12:7069251 3'AG 7069251 Downstream 54bp
chr12 7069304 7069304 1 + C T HNSC 7069301 + 7069281 7069321 41 CCATCCAGATGGTGCGGGCGCAGCGCTCGGGCATGGTGCAG CCATCCAGATGGTGCGGGCGCAGTGCTCGGGCATGGTGCAG < 41bp 0.718559400943066 0.505238617341851 0.17450258 0.29341707 prediction 0.426641567202431 Functional Loss - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7069301 chr12:7069304 nonsynonymous SNV 0.745 5 24 hm5C_associated_SNPs_86983 0 0 0 0 2 PTPN6 chr12:7069402 5'GT 7069402 Upstream 99bp
chr17 6927597 6927597 1 + G A LUAD 6927594 + 6927574 6927614 41 TTGCAGATGGAGCACGTGGTCCAGGCATGCCACCGCTTCAT TTGCAGATGGAGCACGTGGTCCAAGCATGCCACCGCTTCAT < 41bp 0.81924809750453 0.605928440947607 0.35503572 0.06945372 prediction 0.426639313113847 Functional Loss - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6927594 chr17:6927597 synonymous SNV . 0 24 hm5C_associated_SNPs_86984 0 0 0 0 1 BCL6B chr17:6927623 5'GT 6927623 Upstream 27bp
chr11 63283049 63283049 1 + T C UCEC 63283048 + 63283028 63283068 41 CCTGCAGTTTTACTGTGAGCCTGAGGGACCAGGCTGCCCAT CCTGCAGTTTTACTGTGAGCCCGAGGGACCAGGCTGCCCAT < 41bp 0.793390000374112 0.580071385996793 0.5668621 0.6793959 prediction 0.426637228754639 Functional Loss - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63283048 chr11:63283049 nonsynonymous SNV 0.669 4 22 hm5C_associated_SNPs_86986 0 0 0 0 1 LGALS12 chr11:63283035 3'AG 63283035 Downstream 15bp
chr3 51624572 51624572 1 + G A ESCA 51624569 + 51624549 51624589 41 GGGATGATGAAGAAGACCTGCTGGATGGTAAGTGGGCTCTA GGGATGATGAAGAAGACCTGCTGAATGGTAAGTGGGCTCTA < 41bp 0.713318265330525 0.480600740238779 0.4216177 0.2647646 prediction 0.426636530661049 Functional Loss - RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51624569 chr3:51624572 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_86987 0 0 1 0 1 RAD54L2 chr3:51624575 5'GT 51624575 Upstream 4bp
chr3 51624573 51624573 1 + A T ESCA 51624569 + 51624549 51624589 41 GGGATGATGAAGAAGACCTGCTGGATGGTAAGTGGGCTCTA GGGATGATGAAGAAGACCTGCTGGTTGGTAAGTGGGCTCTA < 41bp 0.713318265330525 0.39212364460002 0.4216177 0.3221104 prediction 0.426636530661049 Functional Loss - RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51624569 chr3:51624573 nonsynonymous SNV 0.987 2 25 hm5C_associated_SNPs_86988 0 0 1 0 1 RAD54L2 chr3:51624575 5'GT 51624575 Upstream 3bp
chr3 51624571 51624571 1 + G T UCEC 51624569 + 51624549 51624589 41 GGGATGATGAAGAAGACCTGCTGGATGGTAAGTGGGCTCTA GGGATGATGAAGAAGACCTGCTTGATGGTAAGTGGGCTCTA < 41bp 0.713318265330525 0.379793899176182 0.4216177 0.27545708 prediction 0.426636530661049 Functional Loss - RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51624569 chr3:51624571 synonymous SNV . 0 23 hm5C_associated_SNPs_86989 0 0 1 0 1 RAD54L2 chr3:51624575 5'GT 51624575 Upstream 5bp
chr14 100992272 100992272 1 + C T UCEC 100992269 + 100992249 100992289 41 ATCCTGTTCCTCCGGGAAGGCTCCGAGTTCCTGAGCAGCAC ATCCTGTTCCTCCGGGAAGGCTCTGAGTTCCTGAGCAGCAC < 41bp 0.769293758386924 0.555979442753022 0.09171003 0.071555555 prediction 0.426628631267803 Functional Loss - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100992269 chr14:100992272 synonymous SNV . 0 24 hm5C_associated_SNPs_86991 0 0 0 1 1 WDR25 chr14:100992207 3'AG 100992207 Downstream 66bp
chr16 2284258 2284258 1 + G A SKCM 2284255 + 2284235 2284275 41 AGCACCAGGAGGTGCACGTGCGTGAGCGCCGCTTCCGCTGT AGCACCAGGAGGTGCACGTGCGTAAGCGCCGCTTCCGCTGT < 41bp 0.811573700167584 0.598259717980616 0.5013132 0.42447785 prediction 0.426627964373936 Functional Loss - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2284255 chr16:2284258 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_86993 0 0 1 0 1 E4F1 chr16:2284172 3'AG 2284172 Downstream 87bp
chr4 1206124 1206124 1 - G A LUAD 1206126 - 1206106 1206146 41 CCAGCGCCATGTCCCTGTCCCACGGCCTGCCCCCTGTGGCC CCAGCGCCATGTCCCTGTCCCATGGCCTGCCCCCTGTGGCC < 41bp 0.793820952311369 0.580507398188433 0.25565076 0.4720872 prediction 0.426627108245873 Functional Loss - CTBP1 ENSG00000159692 CDS Human protein_coding chr4:1206126 chr4:1206124 synonymous SNV . 0 23 hm5C_associated_SNPs_86994 0 0 1 0 2 CTBP1 chr4:1206211 3'AG 1206211 Downstream 88bp
chr4 1206124 1206124 1 - G A LUAD 1206126 - 1206106 1206146 41 CCAGCGCCATGTCCCTGTCCCACGGCCTGCCCCCTGTGGCC CCAGCGCCATGTCCCTGTCCCATGGCCTGCCCCCTGTGGCC < 41bp 0.793820952311369 0.580507398188433 0.25565076 0.4720872 prediction 0.426627108245873 Functional Loss - CTBP1 ENSG00000159692 CDS Human protein_coding chr4:1206126 chr4:1206124 synonymous SNV . 0 23 hm5C_associated_SNPs_86994 0 0 1 0 2 CTBP1-AS chr4:1206214 3'AG 1206214 Downstream 91bp
chr9 140938287 140938287 1 + G A LUAD 140938284 + 140938264 140938304 41 AAGGAGGTGGAAGCGGATGACGTGATGAGGAGCGGCCCCCG AAGGAGGTGGAAGCGGATGACGTAATGAGGAGCGGCCCCCG < 41bp 0.71330818104216 0.47815995708506 0.66057026 0.48466325 prediction 0.426616362084321 Functional Loss - CACNA1B ENSG00000148408 CDS Human protein_coding chr9:140938284 chr9:140938287 synonymous SNV . 0 24 hm5C_associated_SNPs_86996 0 0 0 0 2 CACNA1B chr9:140938226 3'AG 140938226 Downstream 62bp
chr9 140938287 140938287 1 + G A LUAD 140938284 + 140938264 140938304 41 AAGGAGGTGGAAGCGGATGACGTGATGAGGAGCGGCCCCCG AAGGAGGTGGAAGCGGATGACGTAATGAGGAGCGGCCCCCG < 41bp 0.71330818104216 0.47815995708506 0.66057026 0.48466325 prediction 0.426616362084321 Functional Loss - CACNA1B ENSG00000148408 CDS Human protein_coding chr9:140938284 chr9:140938287 synonymous SNV . 0 24 hm5C_associated_SNPs_86996 0 0 0 0 2 CACNA1B chr9:140938352 5'GT 140938352 Upstream 66bp
chr17 47866205 47866205 1 + A C rs138591805 47866201 + 47866181 47866221 41 GCCGCAGCCGCCGGCAATGCCGCGAAGGAAGGTGAGAAACG GCCGCAGCCGCCGGCAATGCCGCGCAGGAAGGTGAGAAACG < 41bp 0.931825797955857 0.71852214597963 0.8283959 0.37936756 prediction 0.426607303952454 Functional Loss - KAT7 ENSG00000136504 CDS Human protein_coding chr17:47866201 chr17:47866205 synonymous SNV . 0 25 hm5C_associated_SNPs_86997 0 0 1 0 1 KAT7 chr17:47866211 5'GT 47866211 Upstream 7bp
chr7 116830898 116830898 1 + G A OV 116830895 + 116830875 116830915 41 TTCTGCTTTTCAGATTCTCTCCTGAGGCTGCATCTCGGCGG TTCTGCTTTTCAGATTCTCTCCTAAGGCTGCATCTCGGCGG < 41bp 0.713300051194612 0.466708183504337 0.56175643 0.23018014 prediction 0.426600102389224 Functional Loss - ST7 ENSG00000004866 CDS Human protein_coding chr7:116830895 chr7:116830898 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_86999 0 0 1 0 2 ST7 chr7:116830888 3'AG 116830888 Downstream 11bp
chr7 116830898 116830898 1 + G A OV 116830895 + 116830875 116830915 41 TTCTGCTTTTCAGATTCTCTCCTGAGGCTGCATCTCGGCGG TTCTGCTTTTCAGATTCTCTCCTAAGGCTGCATCTCGGCGG < 41bp 0.713300051194612 0.466708183504337 0.56175643 0.23018014 prediction 0.426600102389224 Functional Loss - ST7 ENSG00000004866 CDS Human protein_coding chr7:116830895 chr7:116830898 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_86999 0 0 1 0 2 ST7 chr7:116830990 5'GT 116830990 Upstream 93bp
chr7 116830899 116830899 1 + A T UCEC 116830895 + 116830875 116830915 41 TTCTGCTTTTCAGATTCTCTCCTGAGGCTGCATCTCGGCGG TTCTGCTTTTCAGATTCTCTCCTGTGGCTGCATCTCGGCGG < 41bp 0.713300051194612 0.394323541744958 0.56175643 0.31449205 prediction 0.426600102389224 Functional Loss - ST7 ENSG00000004866 CDS Human protein_coding chr7:116830895 chr7:116830899 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_87000 0 0 1 0 2 ST7 chr7:116830888 3'AG 116830888 Downstream 12bp
chr7 116830899 116830899 1 + A T UCEC 116830895 + 116830875 116830915 41 TTCTGCTTTTCAGATTCTCTCCTGAGGCTGCATCTCGGCGG TTCTGCTTTTCAGATTCTCTCCTGTGGCTGCATCTCGGCGG < 41bp 0.713300051194612 0.394323541744958 0.56175643 0.31449205 prediction 0.426600102389224 Functional Loss - ST7 ENSG00000004866 CDS Human protein_coding chr7:116830895 chr7:116830899 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_87000 0 0 1 0 2 ST7 chr7:116830990 5'GT 116830990 Upstream 92bp
chr16 844186 844186 1 + C T rs549561799 844184 + 844164 844204 41 CCGCTGCCTCTGCGGGCGAGCACGAGAAGGTGGTCCAGGTA CCGCTGCCTCTGCGGGCGAGCATGAGAAGGTGGTCCAGGTA < 41bp 0.836712685765938 0.623418733955758 0.89586914 0.85411423 prediction 0.426587903620361 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:844184 chr16:844186 synonymous SNV . 0 23 hm5C_associated_SNPs_87002 0 0 1 0 1 CHTF18 chr16:844201 5'GT 844201 Upstream 16bp
chr2 24881562 24881562 1 + G T LIHC 24881558 + 24881538 24881578 41 TTTTTCAACATGAGTGGCCTCGGGGACAGTTCATCCGACCC TTTTTCAACATGAGTGGCCTCGGGTACAGTTCATCCGACCC < 41bp 0.733445690798173 0.520155359584448 0.90559 0.59892625 prediction 0.42658066242745 Functional Loss - NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24881558 chr2:24881562 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_87003 0 0 1 0 2 NCOA1 chr2:24881530 3'AG 24881530 Downstream 33bp
chr2 24881562 24881562 1 + G T LIHC 24881558 + 24881538 24881578 41 TTTTTCAACATGAGTGGCCTCGGGGACAGTTCATCCGACCC TTTTTCAACATGAGTGGCCTCGGGTACAGTTCATCCGACCC < 41bp 0.733445690798173 0.520155359584448 0.90559 0.59892625 prediction 0.42658066242745 Functional Loss - NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24881558 chr2:24881562 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_87003 0 0 1 0 2 NCOA1 chr2:24881635 5'GT 24881635 Upstream 74bp
chr19 12918303 12918303 1 + G A STAD 12918300 + 12918280 12918320 41 TTATACAGTATGCATTGGACCAGGGCGTGAACGTCACCCAG TTATACAGTATGCATTGGACCAGAGCGTGAACGTCACCCAG < 41bp 0.804015294768583 0.590727447976173 0.7647004 0.27848303 prediction 0.426575693584821 Functional Loss - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12918300 chr19:12918303 nonsynonymous SNV 0.810 3 24 hm5C_associated_SNPs_87006 0 0 1 0 1 RNASEH2A chr19:12918320 5'GT 12918320 Upstream 18bp
chr1 10473274 10473274 1 + C T SKCM 10473271 + 10473251 10473291 41 ACAGGGAAGTGGACCGCCATCTCCGCCCTGGAATACGGCGT ACAGGGAAGTGGACCGCCATCTCTGCCCTGGAATACGGCGT < 41bp 0.772715151225968 0.559433853261037 0.32409748 0.14564314 prediction 0.426562595929862 Functional Loss - PGD ENSG00000142657 CDS Human protein_coding chr1:10473271 chr1:10473274 synonymous SNV . 0 24 hm5C_associated_SNPs_87009 0 0 1 0 1 PGD chr1:10473308 5'GT 10473308 Upstream 35bp
chr17 56403074 56403074 1 + C T SKCM 56403072 + 56403052 56403092 41 GGCCGGGGCAAGGGGGCACTCACCTAGCCAGAGGAGGGGTA GGCCGGGGCAAGGGGGCACTCATCTAGCCAGAGGAGGGGTA < 41bp 0.713275770783184 0.473164939004568 0.24474037 0.21849701 prediction 0.426551541566369 Functional Loss - TSPOAP1 ENSG00000005379 CDS Human antisense chr17:56403072 chr17:56403074 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_87012 0 0 0 0 1 TSPOAP1-AS1 chr17:56403089 5'GT 56403089 Upstream 16bp
chr10 101514311 101514311 1 + A T LUAD 101514309 + 101514289 101514329 41 GTGGTATAACAGACAGAAATCTACAAAGGATCCTTGAGGGT GTGGTATAACAGACAGAAATCTTCAAAGGATCCTTGAGGGT < 41bp 0.713268690881998 0.4994849161036 0.89679885 0.61488444 prediction 0.426537381763995 Functional Loss - CUTC ENSG00000119929 CDS Human protein_coding chr10:101514309 chr10:101514311 synonymous SNV . 0 23 hm5C_associated_SNPs_87016 0 0 1 0 2 CUTC chr10:101514286 3'AG 101514286 Downstream 26bp
chr10 101514311 101514311 1 + A T LUAD 101514309 + 101514289 101514329 41 GTGGTATAACAGACAGAAATCTACAAAGGATCCTTGAGGGT GTGGTATAACAGACAGAAATCTTCAAAGGATCCTTGAGGGT < 41bp 0.713268690881998 0.4994849161036 0.89679885 0.61488444 prediction 0.426537381763995 Functional Loss - CUTC ENSG00000119929 CDS Human protein_coding chr10:101514309 chr10:101514311 synonymous SNV . 0 23 hm5C_associated_SNPs_87016 0 0 1 0 2 CUTC chr10:101514391 5'GT 101514391 Upstream 81bp
chr3 35780862 35780862 1 + G A BRCA 35780859 + 35780839 35780879 41 ATGACCCTGAGCCGGCAGTCCTCGGGGGAGACTCCTGAACC ATGACCCTGAGCCGGCAGTCCTCAGGGGAGACTCCTGAACC < 41bp 0.789003263401131 0.575735597933857 0.6790863 0.18258244 prediction 0.426535330934548 Functional Loss - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35780859 chr3:35780862 synonymous SNV . 0 24 hm5C_associated_SNPs_87017 0 0 0 0 1 ARPP21 chr3:35780809 3'AG 35780809 Downstream 54bp
chr16 2607963 2607963 1 + C T UCEC 2607961 + 2607941 2607981 41 CTTGGGGAAGGCTCTTTTTCCACGGTGAGTATTTGCTGCTG CTTGGGGAAGGCTCTTTTTCCATGGTGAGTATTTGCTGCTG < 41bp 0.827515984174479 0.614250251409833 0.8744181 0.7210989 prediction 0.426531465529293 Functional Loss - PDPK1 ENSG00000140992 CDS Human protein_coding chr16:2607961 chr16:2607963 nonsynonymous SNV 0.991 3 23 hm5C_associated_SNPs_87018 0 0 1 0 1 PDPK1 chr16:2607964 5'GT 2607964 Upstream 2bp
chr10 114182166 114182166 1 + G T SARC 114182163 + 114182143 114182183 41 GAAGCCCTGGACAGTGATGGCTGGCTTCACACAGGAGACAT GAAGCCCTGGACAGTGATGGCTGTCTTCACACAGGAGACAT < 41bp 0.713264612481442 0.316781800234309 0.27374968 0.08249426 prediction 0.426529224962884 Functional Loss - ACSL5 ENSG00000197142 CDS Human protein_coding chr10:114182163 chr10:114182166 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_87019 0 0 1 0 2 ACSL5 chr10:114182083 3'AG 114182083 Downstream 84bp
chr10 114182166 114182166 1 + G T SARC 114182163 + 114182143 114182183 41 GAAGCCCTGGACAGTGATGGCTGGCTTCACACAGGAGACAT GAAGCCCTGGACAGTGATGGCTGTCTTCACACAGGAGACAT < 41bp 0.713264612481442 0.316781800234309 0.27374968 0.08249426 prediction 0.426529224962884 Functional Loss - ACSL5 ENSG00000197142 CDS Human protein_coding chr10:114182163 chr10:114182166 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_87019 0 0 1 0 2 ACSL5 chr10:114182199 5'GT 114182199 Upstream 34bp
chr12 1741919 1741919 1 + G T LUAD 1741915 + 1741895 1741935 41 TTCCCGGGCTCTCCCCTGGCCAGAGGAAGCTGTGCCAATTG TTCCCGGGCTCTCCCCTGGCCAGATGAAGCTGTGCCAATTG < 41bp 0.714643007091537 0.501378681661039 0.9216137 0.925867 prediction 0.426528650860994 Functional Loss - WNT5B ENSG00000111186 CDS Human protein_coding chr12:1741915 chr12:1741919 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_87020 0 0 0 0 1 WNT5B chr12:1741824 3'AG 1741824 Downstream 96bp
chr13 26586760 26586760 1 + C T UCEC 26586758 + 26586738 26586778 41 CTCCCTGCAGCAGGGCGTCCCGCGTGAGTACCGCGGGCGGG CTCCCTGCAGCAGGGCGTCCCGTGTGAGTACCGCGGGCGGG < 41bp 0.740870559524614 0.527611864839768 0.86442035 0.75380915 prediction 0.426517389369692 Functional Loss - ATP8A2 ENSG00000132932 CDS Human protein_coding chr13:26586758 chr13:26586760 nonsynonymous SNV 0.203 0 23 hm5C_associated_SNPs_87024 0 0 0 0 2 ATP8A2 chr13:26586669 3'AG 26586669 Downstream 92bp
chr13 26586760 26586760 1 + C T UCEC 26586758 + 26586738 26586778 41 CTCCCTGCAGCAGGGCGTCCCGCGTGAGTACCGCGGGCGGG CTCCCTGCAGCAGGGCGTCCCGTGTGAGTACCGCGGGCGGG < 41bp 0.740870559524614 0.527611864839768 0.86442035 0.75380915 prediction 0.426517389369692 Functional Loss - ATP8A2 ENSG00000132932 CDS Human protein_coding chr13:26586758 chr13:26586760 nonsynonymous SNV 0.203 0 23 hm5C_associated_SNPs_87024 0 0 0 0 2 ATP8A2 chr13:26586760 5'GT 26586760 Upstream 1bp
chr19 39915447 39915447 1 + G T UCEC 39915443 + 39915423 39915463 41 GAGGAGGCTCTCTAGACATTCAGGGCCTCTCACCCACCCCA GAGGAGGCTCTCTAGACATTCAGGTCCTCTCACCCACCCCA < 41bp 0.716027520060392 0.502774801456214 0.9399067 0.90217423 prediction 0.426505437208355 Functional Loss - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39915443 chr19:39915447 nonsynonymous SNV 0.003 1 25 hm5C_associated_SNPs_87028 0 0 0 0 1 PLEKHG2 chr19:39915522 5'GT 39915522 Upstream 76bp
chr4 57340270 57340270 1 + C T LGG 57340268 + 57340248 57340288 41 GCTTAGCAGTGTATAGAGATCTCGTCCGAAACTCCCAAGAT GCTTAGCAGTGTATAGAGATCTTGTCCGAAACTCCCAAGAT < 41bp 0.713250381620099 0.425974808693747 0.04905781 0.047386646 prediction 0.426500763240197 Functional Loss - SRP72 ENSG00000174780 CDS Human protein_coding chr4:57340268 chr4:57340270 synonymous SNV . 0 23 hm5C_associated_SNPs_87029 0 0 1 0 2 SRP72 chr4:57340220 3'AG 57340220 Downstream 51bp
chr4 57340270 57340270 1 + C T LGG 57340268 + 57340248 57340288 41 GCTTAGCAGTGTATAGAGATCTCGTCCGAAACTCCCAAGAT GCTTAGCAGTGTATAGAGATCTTGTCCGAAACTCCCAAGAT < 41bp 0.713250381620099 0.425974808693747 0.04905781 0.047386646 prediction 0.426500763240197 Functional Loss - SRP72 ENSG00000174780 CDS Human protein_coding chr4:57340268 chr4:57340270 synonymous SNV . 0 23 hm5C_associated_SNPs_87029 0 0 1 0 2 SRP72 chr4:57340363 5'GT 57340363 Upstream 94bp
chr4 57340271 57340271 1 + G A STAD 57340268 + 57340248 57340288 41 GCTTAGCAGTGTATAGAGATCTCGTCCGAAACTCCCAAGAT GCTTAGCAGTGTATAGAGATCTCATCCGAAACTCCCAAGAT < 41bp 0.713250381620099 0.484451014538465 0.04905781 0.039025605 prediction 0.426500763240197 Functional Loss - SRP72 ENSG00000174780 CDS Human protein_coding chr4:57340268 chr4:57340271 nonsynonymous SNV 0.982 1 24 hm5C_associated_SNPs_87030 1 0 1 0 2 SRP72 chr4:57340220 3'AG 57340220 Downstream 52bp
chr4 57340271 57340271 1 + G A STAD 57340268 + 57340248 57340288 41 GCTTAGCAGTGTATAGAGATCTCGTCCGAAACTCCCAAGAT GCTTAGCAGTGTATAGAGATCTCATCCGAAACTCCCAAGAT < 41bp 0.713250381620099 0.484451014538465 0.04905781 0.039025605 prediction 0.426500763240197 Functional Loss - SRP72 ENSG00000174780 CDS Human protein_coding chr4:57340268 chr4:57340271 nonsynonymous SNV 0.982 1 24 hm5C_associated_SNPs_87030 1 0 1 0 2 SRP72 chr4:57340363 5'GT 57340363 Upstream 93bp
chr15 91328268 91328268 1 + G T SARC 91328266 + 91328246 91328286 41 GCTGGCCTCAGTGATTCTGCCAGAGATGAAGTGCAGCAGAA GCTGGCCTCAGTGATTCTGCCATAGATGAAGTGCAGCAGAA < 41bp 0.713246723799056 0.360753274946179 0.7889064 0.28939933 prediction 0.426493447598111 Functional Loss - BLM ENSG00000197299 CDS Human protein_coding chr15:91328266 chr15:91328268 nonsynonymous SNV 0.984 5 23 hm5C_associated_SNPs_87031 0 0 1 0 1 BLM chr15:91328311 5'GT 91328311 Upstream 44bp
chr20 39713125 39713125 1 + G T UCEC 39713122 + 39713102 39713142 41 GATGGTAAATTGAAAAAACCCAAGAATAAAGATAAAGATAA GATGGTAAATTGAAAAAACCCAATAATAAAGATAAAGATAA < 41bp 0.713244054793829 0.348619065131116 0.38460946 0.8757106 prediction 0.426488109587658 Functional Loss - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39713122 chr20:39713125 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_87034 0 0 1 1 2 TOP1 chr20:39713102 3'AG 39713102 Downstream 24bp
chr20 39713125 39713125 1 + G T UCEC 39713122 + 39713102 39713142 41 GATGGTAAATTGAAAAAACCCAAGAATAAAGATAAAGATAA GATGGTAAATTGAAAAAACCCAATAATAAAGATAAAGATAA < 41bp 0.713244054793829 0.348619065131116 0.38460946 0.8757106 prediction 0.426488109587658 Functional Loss - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39713122 chr20:39713125 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_87034 0 0 1 1 2 TOP1 chr20:39713208 5'GT 39713208 Upstream 84bp
chr1 162351912 162351912 1 + T C LIHC 162351911 + 162351891 162351931 41 GGAGAAAGGAGCCCTCCAGCCTGGGCAGTGTGGGTGTGACA GGAGAAAGGAGCCCTCCAGCCCGGGCAGTGTGGGTGTGACA < 41bp 0.753241710845612 0.539998483546064 0.3339121 0.4821529 prediction 0.426486454599097 Functional Loss - C1orf226 ENSG00000239887 CDS Human protein_coding chr1:162351911 chr1:162351912 nonsynonymous SNV 0.665 0 22 hm5C_associated_SNPs_87035 0 0 1 0 1 C1orf226 chr1:162352008 5'GT 162352008 Upstream 97bp
chr19 19344697 19344697 1 + G T LUAD 19344695 + 19344675 19344715 41 AGCTGTGATCAGGGCTTCGCCGGGGAGAACTGTGAGATTGG AGCTGTGATCAGGGCTTCGCCGTGGAGAACTGTGAGATTGG < 41bp 0.713237801786229 0.359863688445939 0.9206103 0.4962054 prediction 0.426475603572458 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19344695 chr19:19344697 nonsynonymous SNV 0.722 4 23 hm5C_associated_SNPs_87038 0 0 0 0 2 NCAN chr19:19344598 3'AG 19344598 Downstream 100bp
chr19 19344697 19344697 1 + G T LUAD 19344695 + 19344675 19344715 41 AGCTGTGATCAGGGCTTCGCCGGGGAGAACTGTGAGATTGG AGCTGTGATCAGGGCTTCGCCGTGGAGAACTGTGAGATTGG < 41bp 0.713237801786229 0.359863688445939 0.9206103 0.4962054 prediction 0.426475603572458 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19344695 chr19:19344697 nonsynonymous SNV 0.722 4 23 hm5C_associated_SNPs_87038 0 0 0 0 2 NCAN chr19:19344714 5'GT 19344714 Upstream 18bp
chr7 100189370 100189370 1 + G A LUSC 100189367 + 100189347 100189387 41 GCGTGGCCCCCTTGCTAGCCCACGGCTACCGCCGCTTCTTG GCGTGGCCCCCTTGCTAGCCCACAGCTACCGCCGCTTCTTG < 41bp 0.823020471174168 0.609784852235128 0.15389216 0.060942322 prediction 0.42647123787808 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100189367 chr7:100189370 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_87039 0 0 0 1 1 FBXO24 chr7:100189290 3'AG 100189290 Downstream 81bp
chr17 54535305 54535305 1 + C T SKCM 54535303 + 54535283 54535323 41 CTCATCCACAGTGCTGCAAACTCGGCAGAAGATGCTCGCAG CTCATCCACAGTGCTGCAAACTTGGCAGAAGATGCTCGCAG < 41bp 0.713235588951921 0.430340145210491 0.17455941 0.15508163 prediction 0.426471177903842 Functional Loss - ANKFN1 ENSG00000153930 CDS Human protein_coding chr17:54535303 chr17:54535305 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_87040 0 0 0 0 2 ANKFN1 chr17:54535224 3'AG 54535224 Downstream 82bp
chr17 54535305 54535305 1 + C T SKCM 54535303 + 54535283 54535323 41 CTCATCCACAGTGCTGCAAACTCGGCAGAAGATGCTCGCAG CTCATCCACAGTGCTGCAAACTTGGCAGAAGATGCTCGCAG < 41bp 0.713235588951921 0.430340145210491 0.17455941 0.15508163 prediction 0.426471177903842 Functional Loss - ANKFN1 ENSG00000153930 CDS Human protein_coding chr17:54535303 chr17:54535305 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_87040 0 0 0 0 2 ANKFN1 chr17:54535340 5'GT 54535340 Upstream 36bp
chr6 4610995 4610995 1 + G A UCEC 4610992 + 4610972 4611012 41 TCCAGGCCTGCCAATGCTTCCGCGAACTCCTCGCCCCGACC TCCAGGCCTGCCAATGCTTCCGCAAACTCCTCGCCCCGACC < 41bp 0.713230038930753 0.494328785995901 0.37984586 0.0530338 prediction 0.426460077861505 Functional Loss - KU-MEL-3 ENSG00000205444 ncRNA_exonic Human lincRNA chr6:4610992 chr6:4610995 . . 0 24 hm5C_associated_SNPs_87042 0 0 0 0 1 KU-MEL-3 chr6:4611046 5'GT 4611046 Upstream 52bp
chr12 54676370 54676370 1 + T C rs565686892 54676369 + 54676349 54676389 41 GTCTTAAGGTCGAAGTGGTTCTGGAAACTTTGGTGGTGGTC GTCTTAAGGTCGAAGTGGTTCCGGAAACTTTGGTGGTGGTC < 41bp 0.809396272359918 0.596166806977295 0.3890604 0.8526284 prediction 0.426458930765247 Functional Loss - HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54676369 chr12:54676370 synonymous SNV . 0 22 hm5C_associated_SNPs_87043 0 0 1 0 3 HNRNPA1 chr12:54676357 3'AG 54676357 Downstream 14bp
chr12 54676370 54676370 1 + T C rs565686892 54676369 + 54676349 54676389 41 GTCTTAAGGTCGAAGTGGTTCTGGAAACTTTGGTGGTGGTC GTCTTAAGGTCGAAGTGGTTCCGGAAACTTTGGTGGTGGTC < 41bp 0.809396272359918 0.596166806977295 0.3890604 0.8526284 prediction 0.426458930765247 Functional Loss - HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54676369 chr12:54676370 synonymous SNV . 0 22 hm5C_associated_SNPs_87043 0 0 1 0 3 HNRNPA1 chr12:54676380 5'GT 54676380 Upstream 11bp
chr12 54676370 54676370 1 + T C rs565686892 54676369 + 54676349 54676389 41 GTCTTAAGGTCGAAGTGGTTCTGGAAACTTTGGTGGTGGTC GTCTTAAGGTCGAAGTGGTTCCGGAAACTTTGGTGGTGGTC < 41bp 0.809396272359918 0.596166806977295 0.3890604 0.8526284 prediction 0.426458930765247 Functional Loss - HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54676369 chr12:54676370 synonymous SNV . 0 22 hm5C_associated_SNPs_87043 0 0 1 0 3 HNRNPA1 chr12:54676449 5'GT 54676449 Upstream 80bp
chr18 43221218 43221218 1 + T C THYM 43221217 + 43221197 43221237 41 GAGACCATCTACACAGGCCTCTGGAGCTACAACTGCGTCCT GAGACCATCTACACAGGCCTCCGGAGCTACAACTGCGTCCT < 41bp 0.806527844830969 0.593303019479118 0.369389 0.8659159 prediction 0.426449650703702 Functional Loss - SLC14A2 ENSG00000132874 CDS Human protein_coding chr18:43221217 chr18:43221218 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_87047 0 0 0 0 2 SLC14A2 chr18:43221174 3'AG 43221174 Downstream 45bp
chr18 43221218 43221218 1 + T C THYM 43221217 + 43221197 43221237 41 GAGACCATCTACACAGGCCTCTGGAGCTACAACTGCGTCCT GAGACCATCTACACAGGCCTCCGGAGCTACAACTGCGTCCT < 41bp 0.806527844830969 0.593303019479118 0.369389 0.8659159 prediction 0.426449650703702 Functional Loss - SLC14A2 ENSG00000132874 CDS Human protein_coding chr18:43221217 chr18:43221218 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_87047 0 0 0 0 2 SLC14A2 chr18:43221308 5'GT 43221308 Upstream 91bp
chr20 42695404 42695404 1 + C T rs149010935 42695402 + 42695382 42695422 41 ATCTCTGAGTTCCCCAGCAGCTCGGGATCCTGCTCACCTGG ATCTCTGAGTTCCCCAGCAGCTTGGGATCCTGCTCACCTGG < 41bp 0.853474476724812 0.640253999004081 0.48164755 0.27575326 prediction 0.426440955441463 Functional Loss - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695402 chr20:42695404 nonsynonymous SNV 0.573 0 23 hm5C_associated_SNPs_87050 0 0 1 0 2 TOX2 chr20:42695370 3'AG 42695370 Downstream 35bp
chr20 42695404 42695404 1 + C T rs149010935 42695402 + 42695382 42695422 41 ATCTCTGAGTTCCCCAGCAGCTCGGGATCCTGCTCACCTGG ATCTCTGAGTTCCCCAGCAGCTTGGGATCCTGCTCACCTGG < 41bp 0.853474476724812 0.640253999004081 0.48164755 0.27575326 prediction 0.426440955441463 Functional Loss - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695402 chr20:42695404 nonsynonymous SNV 0.573 0 23 hm5C_associated_SNPs_87050 0 0 1 0 2 TOX2 chr20:42695497 5'GT 42695497 Upstream 94bp
chr18 32398234 32398234 1 + G T LUAD 32398231 + 32398211 32398251 41 CAGCTCTGTCAGGACTGCTTCTGGAGGGGACATGCCGGTGG CAGCTCTGTCAGGACTGCTTCTGTAGGGGACATGCCGGTGG < 41bp 0.888032862050517 0.674812932985135 0.80832183 0.37259388 prediction 0.426439858130765 Functional Loss - DTNA ENSG00000134769 CDS Human protein_coding chr18:32398231 chr18:32398234 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_87051 0 0 1 0 1 DTNA chr18:32398294 5'GT 32398294 Upstream 61bp
chr19 45561150 45561150 1 + G A LUAD 45561147 + 45561127 45561167 41 CGGACGAAGATGAGGTCATCCCCGACATCGGTGGGGTCCCC CGGACGAAGATGAGGTCATCCCCAACATCGGTGGGGTCCCC < 41bp 0.788714289152886 0.575494362068133 0.20226002 0.7258421 prediction 0.426439854169505 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45561147 chr19:45561150 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_87052 0 0 1 0 1 CLASRP chr19:45561156 5'GT 45561156 Upstream 7bp
chr19 8436198 8436198 1 + G T SARC 8436196 + 8436176 8436216 41 ACAGCCGCCTGGCCGTGCAGCTGCGGGACTGGGATGGCAAC ACAGCCGCCTGGCCGTGCAGCTTCGGGACTGGGATGGCAAC < 41bp 0.713217420660936 0.350787795893916 0.30907878 0.110331506 prediction 0.426434841321872 Functional Loss - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8436196 chr19:8436198 synonymous SNV . 0 23 hm5C_associated_SNPs_87054 0 0 1 0 1 ANGPTL4 chr19:8436125 3'AG 8436125 Downstream 74bp
chr7 5269291 5269291 1 + G A rs147945082 5269288 + 5269268 5269308 41 AGATCTTGGACTCTGCCTCTCACGACTGCCCCTTAGTCACT AGATCTTGGACTCTGCCTCTCACAACTGCCCCTTAGTCACT < 41bp 0.808986718019094 0.595773005607797 0.08723536 0.05736205 prediction 0.426427424822596 Functional Loss - WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5269288 chr7:5269291 nonsynonymous SNV 0.981 2 24 hm5C_associated_SNPs_87058 0 0 1 0 3 WIPI2 chr7:5269239 3'AG 5269239 Downstream 53bp
chr7 5269291 5269291 1 + G A rs147945082 5269288 + 5269268 5269308 41 AGATCTTGGACTCTGCCTCTCACGACTGCCCCTTAGTCACT AGATCTTGGACTCTGCCTCTCACAACTGCCCCTTAGTCACT < 41bp 0.808986718019094 0.595773005607797 0.08723536 0.05736205 prediction 0.426427424822596 Functional Loss - WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5269288 chr7:5269291 nonsynonymous SNV 0.981 2 24 hm5C_associated_SNPs_87058 0 0 1 0 3 WIPI2 chr7:5269336 5'GT 5269336 Upstream 46bp
chr7 5269291 5269291 1 + G A rs147945082 5269288 + 5269268 5269308 41 AGATCTTGGACTCTGCCTCTCACGACTGCCCCTTAGTCACT AGATCTTGGACTCTGCCTCTCACAACTGCCCCTTAGTCACT < 41bp 0.808986718019094 0.595773005607797 0.08723536 0.05736205 prediction 0.426427424822596 Functional Loss - WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5269288 chr7:5269291 nonsynonymous SNV 0.981 2 24 hm5C_associated_SNPs_87058 0 0 1 0 3 WIPI2 chr7:5269369 5'GT 5269369 Upstream 79bp
chr22 41923306 41923306 1 + G A STAD 41923303 + 41923283 41923323 41 GCCTGACAGAAACATGGCATCAGGTGGGTGGTGATCGGAGA GCCTGACAGAAACATGGCATCAGATGGGTGGTGATCGGAGA < 41bp 0.713212702309143 0.47602068184438 0.8350016 0.7811114 prediction 0.426425404618285 Functional Loss - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41923303 chr22:41923306 synonymous SNV . 0 24 hm5C_associated_SNPs_87059 0 0 1 0 1 ACO2 chr22:41923292 3'AG 41923292 Downstream 15bp
chr1 10221342 10221342 1 + C T KIRC 10221340 + 10221320 10221360 41 AGAACAGTGGGACCAGTTGCCCCGGGTGAGGACGTGGTCCA AGAACAGTGGGACCAGTTGCCCTGGGTGAGGACGTGGTCCA < 41bp 0.71321199433796 0.438758292703553 0.4083331 0.4513175 prediction 0.42642398867592 Functional Loss - UBE4B ENSG00000130939 CDS Human protein_coding chr1:10221340 chr1:10221342 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_87063 0 0 1 0 1 UBE4B chr1:10221344 5'GT 10221344 Upstream 3bp
chr17 48356636 48356636 1 + G T UCEC 48356633 + 48356613 48356653 41 TTCAGGCCTGAAGAATATACCGGGGATCAGAGGGGCATTGA TTCAGGCCTGAAGAATATACCGGTGATCAGAGGGGCATTGA < 41bp 0.93198577970329 0.718784686335046 0.9439316 0.29220623 prediction 0.426402186736488 Functional Loss - TMEM92 ENSG00000167105 CDS Human protein_coding chr17:48356633 chr17:48356636 synonymous SNV . 0 24 hm5C_associated_SNPs_87068 0 0 0 0 1 TMEM92 chr17:48356556 3'AG 48356556 Downstream 81bp
chrX 149764968 149764968 1 + C T UCEC 149764966 + 149764946 149764986 41 TCTGTTTTGTTTCTAGACGTCTCGAGATGGAGTCAATCGAG TCTGTTTTGTTTCTAGACGTCTTGAGATGGAGTCAATCGAG < 41bp 0.874167807828318 0.660970067871101 0.8434598 0.301628 prediction 0.426395479914434 Functional Loss - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149764966 chrX:149764968 stopgain 0.051 0 23 hm5C_associated_SNPs_87071 2 0 0 0 2 MTM1 chrX:149764962 3'AG 149764962 Downstream 7bp
chrX 149764968 149764968 1 + C T UCEC 149764966 + 149764946 149764986 41 TCTGTTTTGTTTCTAGACGTCTCGAGATGGAGTCAATCGAG TCTGTTTTGTTTCTAGACGTCTTGAGATGGAGTCAATCGAG < 41bp 0.874167807828318 0.660970067871101 0.8434598 0.301628 prediction 0.426395479914434 Functional Loss - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149764966 chrX:149764968 stopgain 0.051 0 23 hm5C_associated_SNPs_87071 2 0 0 0 2 MTM1 chrX:149765034 5'GT 149765034 Upstream 67bp
chr19 50985202 50985202 1 + T C STAD 50985201 + 50985181 50985221 41 GCGCCACCGCCACAGGAGGCCTGAGTGAGGACCGAGACCCC GCGCCACCGCCACAGGAGGCCCGAGTGAGGACCGAGACCCC < 41bp 0.746971865048579 0.533776420860979 0.60452366 0.7144166 prediction 0.426390888375199 Functional Loss - EMC10 ENSG00000161671 CDS Human protein_coding chr19:50985201 chr19:50985202 stoploss 0.994 0 22 hm5C_associated_SNPs_87072 0 0 0 0 2 EMC10 chr19:50985118 3'AG 50985118 Downstream 85bp
chr19 50985202 50985202 1 + T C STAD 50985201 + 50985181 50985221 41 GCGCCACCGCCACAGGAGGCCTGAGTGAGGACCGAGACCCC GCGCCACCGCCACAGGAGGCCCGAGTGAGGACCGAGACCCC < 41bp 0.746971865048579 0.533776420860979 0.60452366 0.7144166 prediction 0.426390888375199 Functional Loss - EMC10 ENSG00000161671 CDS Human protein_coding chr19:50985201 chr19:50985202 stoploss 0.994 0 22 hm5C_associated_SNPs_87072 0 0 0 0 2 EMC10 chr19:50985204 5'GT 50985204 Upstream 3bp
chr20 58994114 58994114 1 + G A rs73134682 58994111 + 58994091 58994131 41 CGCCAGGTGGAGCACAGTGGCACGATCTCGGCTCACTCCAA CGCCAGGTGGAGCACAGTGGCACAATCTCGGCTCACTCCAA < 41bp 0.720527938764553 0.507334923937566 0.91636837 0.9028418 prediction 0.426386029653975 Functional Loss - MIR646HG;LOC101928048 ENSG00000228340 ncRNA_intronic Human lincRNA chr20:58994111 chr20:58994114 . . 0 24 hm5C_associated_SNPs_87073 0 0 0 0 1 MIR646HG;LOC101928048 chr20:58994213 5'GT 58994213 Upstream 100bp
chrX 54466893 54466893 1 + G T LUAD 54466891 + 54466871 54466911 41 AAGATGCGCGAGCTCTTTTCCGGGCTGGGGTCTGCGCGGCC AAGATGCGCGAGCTCTTTTCCGTGCTGGGGTCTGCGCGGCC < 41bp 0.909932713428785 0.696740037301915 0.93163633 0.8558465 prediction 0.42638535225374 Functional Loss - TSR2 ENSG00000158526 CDS Human protein_coding chrX:54466891 chrX:54466893 synonymous SNV . 0 23 hm5C_associated_SNPs_87074 0 0 1 0 1 TSR2 chrX:54466935 5'GT 54466935 Upstream 43bp
chr9 90388437 90388437 1 + G A LUAD 90388434 + 90388414 90388454 41 GTTTCACTGAGTGTGCAGACCTGGTGGACTGCTCTAGGCTT GTTTCACTGAGTGTGCAGACCTGATGGACTGCTCTAGGCTT < 41bp 0.713192535606072 0.492758647777653 0.36442056 0.09733951 prediction 0.426385071212143 Functional Loss - CTSL3P ENSG00000188029 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:90388434 chr9:90388437 . . 0 24 hm5C_associated_SNPs_87076 0 0 0 0 1 CTSL3P chr9:90388366 3'AG 90388366 Downstream 72bp
chr4 25676012 25676012 1 + G A COAD 25676009 + 25675989 25676029 41 GTACAGAGCAGCTCTGTGTTCACGTCGGCCTTGACCCCCCT GTACAGAGCAGCTCTGTGTTCACATCGGCCTTGACCCCCCT < 41bp 0.811923892719143 0.598732670525229 0.109360635 0.11688 prediction 0.426382444387827 Functional Loss - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25676009 chr4:25676012 synonymous SNV . 0 24 hm5C_associated_SNPs_87077 0 0 0 0 2 SLC34A2 chr4:25675918 3'AG 25675918 Downstream 95bp
chr4 25676012 25676012 1 + G A COAD 25676009 + 25675989 25676029 41 GTACAGAGCAGCTCTGTGTTCACGTCGGCCTTGACCCCCCT GTACAGAGCAGCTCTGTGTTCACATCGGCCTTGACCCCCCT < 41bp 0.811923892719143 0.598732670525229 0.109360635 0.11688 prediction 0.426382444387827 Functional Loss - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25676009 chr4:25676012 synonymous SNV . 0 24 hm5C_associated_SNPs_87077 0 0 0 0 2 SLC34A2 chr4:25676034 5'GT 25676034 Upstream 23bp
chr22 29694857 29694857 1 + C T LGG 29694854 + 29694834 29694874 41 CTGGAGGAGGAAACGTCCAGCACCGAGCTGGAGACTGGCAG CTGGAGGAGGAAACGTCCAGCACTGAGCTGGAGACTGGCAG < 41bp 0.749488869122477 0.536298276620175 0.30535716 0.25579488 prediction 0.426381185004603 Functional Loss - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29694854 chr22:29694857 stopgain 1.000 0 24 hm5C_associated_SNPs_87079 0 0 1 0 1 EWSR1 chr22:29694885 5'GT 29694885 Upstream 29bp
chr19 7531821 7531821 1 + G A rs79986215 7531818 + 7531798 7531838 41 TCCCAGGTGGAGGCGCCAGGCACGGAATCCGATCCCCGTCT TCCCAGGTGGAGGCGCCAGGCACAGAATCCGATCCCCGTCT < 41bp 0.819778223487933 0.606588177987086 0.46396482 0.084533066 prediction 0.426380091001695 Functional Loss - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7531818 chr19:7531821 synonymous SNV . 0 24 hm5C_associated_SNPs_87080 0 0 0 0 2 ARHGEF18 chr19:7531804 3'AG 7531804 Downstream 18bp
chr19 7531821 7531821 1 + G A rs79986215 7531818 + 7531798 7531838 41 TCCCAGGTGGAGGCGCCAGGCACGGAATCCGATCCCCGTCT TCCCAGGTGGAGGCGCCAGGCACAGAATCCGATCCCCGTCT < 41bp 0.819778223487933 0.606588177987086 0.46396482 0.084533066 prediction 0.426380091001695 Functional Loss - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7531818 chr19:7531821 synonymous SNV . 0 24 hm5C_associated_SNPs_87080 0 0 0 0 2 ARHGEF18 chr19:7531860 5'GT 7531860 Upstream 40bp
chr17 78201686 78201686 1 + C T rs61011315 78201684 + 78201664 78201704 41 TGCTGAAGCTGATGCGGGACCACGTGCCTCCCGTCCACCCC TGCTGAAGCTGATGCGGGACCATGTGCCTCCCGTCCACCCC < 41bp 0.829244859959148 0.616056370517948 0.31943226 0.2608729 prediction 0.426376978882399 Functional Loss - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78201684 chr17:78201686 synonymous SNV . 0 23 hm5C_associated_SNPs_87081 0 0 1 0 1 SLC26A11 chr17:78201759 5'GT 78201759 Upstream 74bp
chr12 97147552 97147552 1 + G A UCEC 97147549 + 97147529 97147569 41 GTGGCCAAGCAAGTATATTACAAGAATAAAAGGAAGGACCC GTGGCCAAGCAAGTATATTACAAAAATAAAAGGAAGGACCC < 41bp 0.754626922164385 0.541442887119686 0.21003169 0.17320031 prediction 0.426368070089397 Functional Loss - CFAP54 ENSG00000188596 CDS Human protein_coding chr12:97147549 chr12:97147552 synonymous SNV . 0 24 hm5C_associated_SNPs_87085 0 0 0 0 1 CFAP54 chr12:97147521 3'AG 97147521 Downstream 32bp
chr21 45738399 45738399 1 + C T rs368709851 45738397 + 45738377 45738417 41 GTGATGGCGCTGCTGGAAGCCACGCCTGACACGCCGGCCTG GTGATGGCGCTGCTGGAAGCCATGCCTGACACGCCGGCCTG < 41bp 0.713182778083461 0.463895306190922 0.6631024 0.62084234 prediction 0.426365556166922 Functional Loss - PFKL ENSG00000141959 CDS Human protein_coding chr21:45738397 chr21:45738399 nonsynonymous SNV 0.370 5 23 hm5C_associated_SNPs_87086 0 0 1 0 2 PFKL chr21:45738353 3'AG 45738353 Downstream 47bp
chr21 45738399 45738399 1 + C T rs368709851 45738397 + 45738377 45738417 41 GTGATGGCGCTGCTGGAAGCCACGCCTGACACGCCGGCCTG GTGATGGCGCTGCTGGAAGCCATGCCTGACACGCCGGCCTG < 41bp 0.713182778083461 0.463895306190922 0.6631024 0.62084234 prediction 0.426365556166922 Functional Loss - PFKL ENSG00000141959 CDS Human protein_coding chr21:45738397 chr21:45738399 nonsynonymous SNV 0.370 5 23 hm5C_associated_SNPs_87086 0 0 1 0 2 PFKL chr21:45738478 5'GT 45738478 Upstream 80bp
chr19 19309482 19309482 1 + T C UCEC 19309481 + 19309461 19309501 41 GACAGAATGGAGGGACGCCACTGCTGTACGCTGTGCGCGGG GACAGAATGGAGGGACGCCACCGCTGTACGCTGTGCGCGGG < 41bp 0.821518962486268 0.608339711353101 0.26674557 0.2387636 prediction 0.426358502266333 Functional Loss - RFXANK ENSG00000064490 CDS Human protein_coding chr19:19309481 chr19:19309482 nonsynonymous SNV 0.821 4 22 hm5C_associated_SNPs_87089 0 0 1 0 2 RFXANK chr19:19309466 3'AG 19309466 Downstream 17bp
chr19 19309482 19309482 1 + T C UCEC 19309481 + 19309461 19309501 41 GACAGAATGGAGGGACGCCACTGCTGTACGCTGTGCGCGGG GACAGAATGGAGGGACGCCACCGCTGTACGCTGTGCGCGGG < 41bp 0.821518962486268 0.608339711353101 0.26674557 0.2387636 prediction 0.426358502266333 Functional Loss - RFXANK ENSG00000064490 CDS Human protein_coding chr19:19309481 chr19:19309482 nonsynonymous SNV 0.821 4 22 hm5C_associated_SNPs_87089 0 0 1 0 2 RFXANK chr19:19309532 5'GT 19309532 Upstream 51bp
chr22 41919894 41919894 1 + G A STAD 41919891 + 41919871 41919911 41 ACCTCCTACAACAGGAACTTCACGGGCCGCAACGACGCAAA ACCTCCTACAACAGGAACTTCACAGGCCGCAACGACGCAAA < 41bp 0.771714475135616 0.558538234682508 0.07719356 0.105669886 prediction 0.426352480906216 Functional Loss - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41919891 chr22:41919894 synonymous SNV . 0 24 hm5C_associated_SNPs_87093 0 0 0 0 2 ACO2 chr22:41919834 3'AG 41919834 Downstream 61bp
chr22 41919894 41919894 1 + G A STAD 41919891 + 41919871 41919911 41 ACCTCCTACAACAGGAACTTCACGGGCCGCAACGACGCAAA ACCTCCTACAACAGGAACTTCACAGGCCGCAACGACGCAAA < 41bp 0.771714475135616 0.558538234682508 0.07719356 0.105669886 prediction 0.426352480906216 Functional Loss - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41919891 chr22:41919894 synonymous SNV . 0 24 hm5C_associated_SNPs_87093 0 0 0 0 2 ACO2 chr22:41919945 5'GT 41919945 Upstream 52bp
chr1 201282382 201282382 1 + G T LUSC 201282380 + 201282360 201282400 41 AACTGGAGCCGGCACTACCCCCGGGGCAGCTGTAACACCAC AACTGGAGCCGGCACTACCCCCTGGGCAGCTGTAACACCAC < 41bp 0.71317215731331 0.347674431884102 0.87977 0.18273005 prediction 0.42634431462662 Functional Loss - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201282380 chr1:201282382 nonsynonymous SNV 0.815 1 23 hm5C_associated_SNPs_87096 0 0 0 0 2 PKP1 chr1:201282294 3'AG 201282294 Downstream 89bp
chr1 201282382 201282382 1 + G T LUSC 201282380 + 201282360 201282400 41 AACTGGAGCCGGCACTACCCCCGGGGCAGCTGTAACACCAC AACTGGAGCCGGCACTACCCCCTGGGCAGCTGTAACACCAC < 41bp 0.71317215731331 0.347674431884102 0.87977 0.18273005 prediction 0.42634431462662 Functional Loss - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201282380 chr1:201282382 nonsynonymous SNV 0.815 1 23 hm5C_associated_SNPs_87096 0 0 0 0 2 PKP1 chr1:201282450 5'GT 201282450 Upstream 69bp
chr6 109169655 109169655 1 + G A rs191143068 109169652 + 109169632 109169672 41 GAGCGGCGTCGTGGGGTTACCCCGCCCGCGCCAGCGCTGCA GAGCGGCGTCGTGGGGTTACCCCACCCGCGCCAGCGCTGCA < 41bp 0.770607863047004 0.557437063491643 0.39638165 0.7595048 prediction 0.426341599110723 Functional Loss - ARMC2 ENSG00000118690 UTR5 Human protein_coding chr6:109169652 chr6:109169655 . . 0 24 hm5C_associated_SNPs_87097 0 0 1 0 1 ARMC2 chr6:109169749 5'GT 109169749 Upstream 95bp
chr17 56276546 56276546 1 + G T LUSC 56276543 + 56276523 56276563 41 TACAATGAGGCTCGGAAGATCATGGGGGCCATGGTCCAGGT TACAATGAGGCTCGGAAGATCATTGGGGCCATGGTCCAGGT < 41bp 0.713168181429573 0.305067568674014 0.64673257 0.24838415 prediction 0.426336362859146 Functional Loss - EPX ENSG00000121053 CDS Human protein_coding chr17:56276543 chr17:56276546 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_87098 0 0 0 0 1 EPX chr17:56276561 5'GT 56276561 Upstream 16bp
chr8 20054971 20054971 1 + C T ESCA 20054969 + 20054949 20054989 41 ACGGGGCCGCACCCGAGCTACCCGTGCCCACCGGTGGGCCG ACGGGGCCGCACCCGAGCTACCTGTGCCCACCGGTGGGCCG < 41bp 0.71316569453225 0.478046958611748 0.21450764 0.10765219 prediction 0.4263313890645 Functional Loss - ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20054969 chr8:20054971 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_87101 0 0 1 0 1 ATP6V1B2 chr8:20055053 5'GT 20055053 Upstream 83bp
chr3 133467339 133467339 1 + G A COAD 133467336 + 133467316 133467356 41 CCACTAAGTGCCAGAGTTTCCGCGACCATATGAAAAGCGTC CCACTAAGTGCCAGAGTTTCCGCAACCATATGAAAAGCGTC < 41bp 0.798539509942517 0.585376898128665 0.20415458 0.1130085 prediction 0.426325223627704 Functional Loss - TF ENSG00000091513 CDS Human protein_coding chr3:133467336 chr3:133467339 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_87102 0 0 1 0 3 TF chr3:133467256 3'AG 133467256 Downstream 84bp
chr3 133467339 133467339 1 + G A COAD 133467336 + 133467316 133467356 41 CCACTAAGTGCCAGAGTTTCCGCGACCATATGAAAAGCGTC CCACTAAGTGCCAGAGTTTCCGCAACCATATGAAAAGCGTC < 41bp 0.798539509942517 0.585376898128665 0.20415458 0.1130085 prediction 0.426325223627704 Functional Loss - TF ENSG00000091513 CDS Human protein_coding chr3:133467336 chr3:133467339 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_87102 0 0 1 0 3 TF chr3:133467330 3'AG 133467330 Downstream 10bp
chr3 133467339 133467339 1 + G A COAD 133467336 + 133467316 133467356 41 CCACTAAGTGCCAGAGTTTCCGCGACCATATGAAAAGCGTC CCACTAAGTGCCAGAGTTTCCGCAACCATATGAAAAGCGTC < 41bp 0.798539509942517 0.585376898128665 0.20415458 0.1130085 prediction 0.426325223627704 Functional Loss - TF ENSG00000091513 CDS Human protein_coding chr3:133467336 chr3:133467339 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_87102 0 0 1 0 3 TF chr3:133467428 5'GT 133467428 Upstream 90bp
chr5 169494645 169494645 1 + G A SKCM 169494642 + 169494622 169494662 41 CCACTCTCCATGCTCCTGAACGGGATTGTGGACCCTGCTGT CCACTCTCCATGCTCCTGAACGGAATTGTGGACCCTGCTGT < 41bp 0.787265658563593 0.574103669455034 0.9306514 0.8242545 prediction 0.426323978217118 Functional Loss - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169494642 chr5:169494645 synonymous SNV . 0 24 hm5C_associated_SNPs_87103 0 0 1 0 1 DOCK2 chr5:169494690 5'GT 169494690 Upstream 46bp
chr4 5800473 5800473 1 + G A rs146739019 5800470 + 5800450 5800490 41 GCAGGCGCTGCTGGTGCATGCACGGAATGCAGCCACCAAGA GCAGGCGCTGCTGGTGCATGCACAGAATGCAGCCACCAAGA < 41bp 0.823308826034874 0.610151094508059 0.23674205 0.0930042 prediction 0.426315463053629 Functional Loss - EVC ENSG00000072840 CDS Human protein_coding chr4:5800470 chr4:5800473 nonsynonymous SNV 0.008 1 24 hm5C_associated_SNPs_87106 0 0 0 0 1 EVC chr4:5800519 5'GT 5800519 Upstream 47bp
chrX 128927705 128927705 1 + G A STAD 128927702 + 128927682 128927722 41 GGAACCCAAGGTGGACATCCCGCGCGACTCAGGCTGCTTTG GGAACCCAAGGTGGACATCCCGCACGACTCAGGCTGCTTTG < 41bp 0.814035248360042 0.600880307683536 0.3297556 0.03998649 prediction 0.426309881353014 Functional Loss - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128927702 chrX:128927705 nonsynonymous SNV 0.062 4 24 hm5C_associated_SNPs_87107 0 0 0 0 1 SASH3 chrX:128927618 3'AG 128927618 Downstream 88bp
chr1 206566186 206566186 1 + C T BLCA 206566183 + 206566163 206566203 41 CAGACCCCACGCTCCCCTGACTCCACGGCCAACGTTCGCAT CAGACCCCACGCTCCCCTGACTCTACGGCCAACGTTCGCAT < 41bp 0.713153779309241 0.46943356508973 0.94483864 0.92382324 prediction 0.426307558618482 Functional Loss - SRGAP2 ENSG00000163486 CDS Human other chr1:206566183 chr1:206566186 synonymous SNV . 0 24 hm5C_associated_SNPs_87108 0 0 1 0 1 SRGAP2 chr1:206566261 5'GT 206566261 Upstream 76bp
chr7 16823094 16823094 1 + C T UCEC 16823092 + 16823072 16823112 41 AGGAACCAGAAAGACCCCCGCGCGAATCCTAGTGCATTCCT AGGAACCAGAAAGACCCCCGCGTGAATCCTAGTGCATTCCT < 41bp 0.851479654400773 0.638326525167541 0.47235855 0.46310335 prediction 0.426306258466463 Functional Loss - TSPAN13 ENSG00000106537 CDS Human protein_coding chr7:16823092 chr7:16823094 nonsynonymous SNV 0.925 2 23 hm5C_associated_SNPs_87109 0 0 1 0 1 TSPAN13 chr7:16823042 3'AG 16823042 Downstream 53bp
chr19 41763503 41763503 1 + C T UCEC 41763500 + 41763480 41763520 41 ACTATCTGCGCCAGGGAAATCGCCTGAAGCAGCCTGCGGAC ACTATCTGCGCCAGGGAAATCGCTTGAAGCAGCCTGCGGAC < 41bp 0.741990574474575 0.528841029745058 0.6139734 0.3904597 prediction 0.426299089459034 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41763500 chr19:41763503 synonymous SNV . 0 24 hm5C_associated_SNPs_87111 0 0 0 0 1 AXL chr19:41763534 5'GT 41763534 Upstream 32bp
chr16 67859956 67859956 1 + G A STAD 67859953 + 67859933 67859973 41 GATCCAGCGCACTTCCACGCCGCGGCCTGACTGGACCAAGT GATCCAGCGCACTTCCACGCCGCAGCCTGACTGGACCAAGT < 41bp 0.785582326239215 0.57243296710233 0.18969098 0.042175114 prediction 0.426298718273771 Functional Loss - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67859953 chr16:67859956 nonsynonymous SNV 0.607 4 24 hm5C_associated_SNPs_87112 0 0 0 0 1 TSNAXIP1 chr16:67859979 5'GT 67859979 Upstream 24bp
chr8 91953091 91953091 1 + C T UCEC 91953088 + 91953068 91953108 41 TTCCAGCTCGCTCTGAAACACTACGTGGAGAGTGCTTCCTC TTCCAGCTCGCTCTGAAACACTATGTGGAGAGTGCTTCCTC < 41bp 0.750270845213786 0.537122603467152 0.116772026 0.1548126 prediction 0.426296483493267 Functional Loss - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91953088 chr8:91953091 synonymous SNV . 0 24 hm5C_associated_SNPs_87114 0 0 1 0 2 NECAB1 chr8:91953014 3'AG 91953014 Downstream 78bp
chr8 91953091 91953091 1 + C T UCEC 91953088 + 91953068 91953108 41 TTCCAGCTCGCTCTGAAACACTACGTGGAGAGTGCTTCCTC TTCCAGCTCGCTCTGAAACACTATGTGGAGAGTGCTTCCTC < 41bp 0.750270845213786 0.537122603467152 0.116772026 0.1548126 prediction 0.426296483493267 Functional Loss - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91953088 chr8:91953091 synonymous SNV . 0 24 hm5C_associated_SNPs_87114 0 0 1 0 2 NECAB1 chr8:91953126 5'GT 91953126 Upstream 36bp
chr1 159169588 159169588 1 - G A COAD 159169591 - 159169571 159169611 41 GACAATGAAAGCCACGATCCCACCGATGATGGCGTGGTAGG GACAATGAAAGCCACGATCCCACTGATGATGGCGTGGTAGG < 41bp 0.727934744164612 0.514786945285932 0.10640445 0.2230511 prediction 0.426295597757359 Functional Loss - CADM3 ENSG00000162706 CDS Human protein_coding chr1:159169591 chr1:159169588 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_87115 0 0 0 0 2 CADM3 chr1:159169576 5'GT 159169576 Upstream 13bp
chr1 159169588 159169588 1 - G A COAD 159169591 - 159169571 159169611 41 GACAATGAAAGCCACGATCCCACCGATGATGGCGTGGTAGG GACAATGAAAGCCACGATCCCACTGATGATGGCGTGGTAGG < 41bp 0.727934744164612 0.514786945285932 0.10640445 0.2230511 prediction 0.426295597757359 Functional Loss - CADM3 ENSG00000162706 CDS Human protein_coding chr1:159169591 chr1:159169588 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_87115 0 0 0 0 2 CADM3 chr1:159169649 3'AG 159169649 Downstream 62bp
chr20 53260055 53260055 1 + G A COAD 53260052 + 53260032 53260072 41 GAGCACCATGGTGCCCCTGCCTCGCAGCGCCTACTGGCAGC GAGCACCATGGTGCCCCTGCCTCACAGCGCCTACTGGCAGC < 41bp 0.801864485121638 0.58872257699529 0.4233268 0.08311978 prediction 0.426283816252697 Functional Loss - DOK5 ENSG00000101134 CDS Human protein_coding chr20:53260052 chr20:53260055 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_87118 0 0 0 0 2 DOK5 chr20:53259997 3'AG 53259997 Downstream 59bp
chr20 53260055 53260055 1 + G A COAD 53260052 + 53260032 53260072 41 GAGCACCATGGTGCCCCTGCCTCGCAGCGCCTACTGGCAGC GAGCACCATGGTGCCCCTGCCTCACAGCGCCTACTGGCAGC < 41bp 0.801864485121638 0.58872257699529 0.4233268 0.08311978 prediction 0.426283816252697 Functional Loss - DOK5 ENSG00000101134 CDS Human protein_coding chr20:53260052 chr20:53260055 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_87118 0 0 0 0 2 DOK5 chr20:53260117 5'GT 53260117 Upstream 63bp
chr20 57899415 57899415 1 + G T UCEC 57899413 + 57899393 57899433 41 TCAAGGACCAACAAAGCAAGCAGGCTTTAGACCTCCACCAT TCAAGGACCAACAAAGCAAGCATGCTTTAGACCTCCACCAT < 41bp 0.713140999493297 0.373325457289447 0.7881259 0.15431362 prediction 0.426281998986593 Functional Loss - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57899413 chr20:57899415 nonsynonymous SNV 0.009 1 23 hm5C_associated_SNPs_87119 0 0 0 0 2 EDN3 chr20:57899382 3'AG 57899382 Downstream 34bp
chr20 57899415 57899415 1 + G T UCEC 57899413 + 57899393 57899433 41 TCAAGGACCAACAAAGCAAGCAGGCTTTAGACCTCCACCAT TCAAGGACCAACAAAGCAAGCATGCTTTAGACCTCCACCAT < 41bp 0.713140999493297 0.373325457289447 0.7881259 0.15431362 prediction 0.426281998986593 Functional Loss - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57899413 chr20:57899415 nonsynonymous SNV 0.009 1 23 hm5C_associated_SNPs_87119 0 0 0 0 2 EDN3 chr20:57899386 3'AG 57899386 Downstream 30bp
chr9 124064369 124064369 1 + G A LUSC 124064366 + 124064346 124064386 41 AACCTTTATGGAGACTTCTTCACGGGCGACGCCTACGTCAT AACCTTTATGGAGACTTCTTCACAGGCGACGCCTACGTCAT < 41bp 0.789384921396631 0.576249617653576 0.9225242 0.6961839 prediction 0.426270607486109 Functional Loss - GSN ENSG00000148180 CDS Human protein_coding chr9:124064366 chr9:124064369 synonymous SNV . 0 24 hm5C_associated_SNPs_87121 0 0 1 0 1 GSN chr9:124064445 5'GT 124064445 Upstream 77bp
chr8 11614514 11614514 1 + C T UCEC 11614511 + 11614491 11614531 41 AACTCCAGCAACGCCACCACCAGCAGCAGCGAGGAGATGCG AACTCCAGCAACGCCACCACCAGTAGCAGCGAGGAGATGCG < 41bp 0.745558003119078 0.532423213289933 0.3912993 0.24455059 prediction 0.42626957965829 Functional Loss - GATA4 ENSG00000136574 CDS Human protein_coding chr8:11614511 chr8:11614514 synonymous SNV . 0 24 hm5C_associated_SNPs_87122 0 0 0 0 2 GATA4 chr8:11614444 3'AG 11614444 Downstream 71bp
chr8 11614514 11614514 1 + C T UCEC 11614511 + 11614491 11614531 41 AACTCCAGCAACGCCACCACCAGCAGCAGCGAGGAGATGCG AACTCCAGCAACGCCACCACCAGTAGCAGCGAGGAGATGCG < 41bp 0.745558003119078 0.532423213289933 0.3912993 0.24455059 prediction 0.42626957965829 Functional Loss - GATA4 ENSG00000136574 CDS Human protein_coding chr8:11614511 chr8:11614514 synonymous SNV . 0 24 hm5C_associated_SNPs_87122 0 0 0 0 2 GATA4 chr8:11614592 5'GT 11614592 Upstream 79bp
chr2 113346443 113346443 1 + G A LGG 113346440 + 113346420 113346460 41 ATGTTGATGTACTTTCTCCACAGGCACAGCCACTTCCTGCC ATGTTGATGTACTTTCTCCACAGACACAGCCACTTCCTGCC < 41bp 0.713134272566713 0.494651150540125 0.062411964 0.024820179 prediction 0.426268545133425 Functional Loss - CHCHD5 ENSG00000125611 CDS Human protein_coding chr2:113346440 chr2:113346443 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_87123 0 0 1 0 1 CHCHD5 chr2:113346443 3'AG 113346443 Downstream 1bp
chr20 46277852 46277852 1 + A C LIHC 46277851 + 46277831 46277871 41 TGCAGCCCCAGGTGAGCTCCCAGGTGAGGATGATAAGCCTC TGCAGCCCCAGGTGAGCTCCCCGGTGAGGATGATAAGCCTC < 41bp 0.713134203795666 0.438878496841098 0.9078289 0.7326397 prediction 0.426268407591331 Functional Loss - NCOA3 ENSG00000124151 CDS Human protein_coding chr20:46277851 chr20:46277852 nonsynonymous SNV 0.587 1 22 hm5C_associated_SNPs_87125 0 0 1 0 1 NCOA3 chr20:46277853 5'GT 46277853 Upstream 2bp
chr16 30507785 30507785 1 + G A OV 30507782 + 30507762 30507802 41 AGAAGGGACCCAAGTGCTCTCAGGAATTCAGTGGTTTGGAC AGAAGGGACCCAAGTGCTCTCAGAAATTCAGTGGTTTGGAC < 41bp 0.803808298425338 0.59067552342214 0.8971679 0.88269955 prediction 0.426265550006396 Functional Loss - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30507782 chr16:30507785 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_87127 0 0 0 0 1 ITGAL chr16:30507757 3'AG 30507757 Downstream 29bp
chr1 16377999 16377999 1 + C T rs6650118 16377996 + 16377976 16378016 41 TGGATGCTGATTCTGGCCACCACCATCCCCATGCCTGCCGG TGGATGCTGATTCTGGCCACCACTATCCCCATGCCTGCCGG < 41bp 0.72943246444833 0.51630230287972 0.091561645 0.09870061 prediction 0.42626032313722 Functional Loss - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16377996 chr1:16377999 synonymous SNV . 0 24 hm5C_associated_SNPs_87130 0 0 0 0 2 CLCNKB chr1:16377973 3'AG 16377973 Downstream 27bp
chr1 16377999 16377999 1 + C T rs6650118 16377996 + 16377976 16378016 41 TGGATGCTGATTCTGGCCACCACCATCCCCATGCCTGCCGG TGGATGCTGATTCTGGCCACCACTATCCCCATGCCTGCCGG < 41bp 0.72943246444833 0.51630230287972 0.091561645 0.09870061 prediction 0.42626032313722 Functional Loss - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16377996 chr1:16377999 synonymous SNV . 0 24 hm5C_associated_SNPs_87130 0 0 0 0 2 CLCNKB chr1:16378042 5'GT 16378042 Upstream 44bp
chr7 66582477 66582477 1 + G A UCEC 66582474 + 66582454 66582494 41 AAAAAATATTACTAAGGAACCTCGAGCCGGTTACTCAGCTG AAAAAATATTACTAAGGAACCTCAAGCCGGTTACTCAGCTG < 41bp 0.75496701444109 0.541838134727059 0.5839108 0.25024718 prediction 0.42625775942806 Functional Loss - TYW1 ENSG00000198874 CDS Human protein_coding chr7:66582474 chr7:66582477 nonsynonymous SNV 0.680 0 24 hm5C_associated_SNPs_87131 0 0 0 0 1 TYW1 chr7:66582470 3'AG 66582470 Downstream 8bp
chr15 75091736 75091736 1 + C T UCEC 75091733 + 75091713 75091753 41 GACTACACGCTGTGCGTGAGCTGCGACGGCAAGGTGGAGCA GACTACACGCTGTGCGTGAGCTGTGACGGCAAGGTGGAGCA < 41bp 0.74984479684598 0.536718489979954 0.15864894 0.16752788 prediction 0.426252613732053 Functional Loss - CSK ENSG00000103653 CDS Human protein_coding chr15:75091733 chr15:75091736 synonymous SNV . 0 24 hm5C_associated_SNPs_87133 0 0 1 0 1 CSK chr15:75091832 5'GT 75091832 Upstream 97bp
chr17 72346711 72346711 1 + C T PAAD 72346709 + 72346689 72346729 41 TCCCGACACCTGCTCACCATCGCCGGGTAAGCCCCCCTCCC TCCCGACACCTGCTCACCATCGTCGGGTAAGCCCCCCTCCC < 41bp 0.824579568678642 0.61145739564924 0.4616557 0.55073 prediction 0.426244346058805 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72346709 chr17:72346711 nonsynonymous SNV 0.042 2 23 hm5C_associated_SNPs_87137 0 0 0 0 1 KIF19 chr17:72346714 5'GT 72346714 Upstream 4bp
chr4 654272 654272 1 + G A STAD 654269 + 654249 654289 41 CCCACAGAAGGAGGAGCTGCCAGGGCCCACCACATTTGACA CCCACAGAAGGAGGAGCTGCCAGAGCCCACCACATTTGACA < 41bp 0.795763459665055 0.582641759367339 0.8341013 0.49409568 prediction 0.426243400595433 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:654269 chr4:654272 nonsynonymous SNV 0.586 0 24 hm5C_associated_SNPs_87138 0 0 0 0 1 PDE6B chr4:654256 3'AG 654256 Downstream 17bp
chr17 79031756 79031756 1 + C T LUAD 79031754 + 79031734 79031774 41 CTGGCCAGCGAGAGCCAGGGCTCCAAAGAACTCGGTGAGAC CTGGCCAGCGAGAGCCAGGGCTTCAAAGAACTCGGTGAGAC < 41bp 0.713120670525141 0.444912924610327 0.90380204 0.32471097 prediction 0.426241341050282 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79031754 chr17:79031756 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_87139 0 0 0 0 2 BAIAP2 chr17:79031681 3'AG 79031681 Downstream 76bp
chr17 79031756 79031756 1 + C T LUAD 79031754 + 79031734 79031774 41 CTGGCCAGCGAGAGCCAGGGCTCCAAAGAACTCGGTGAGAC CTGGCCAGCGAGAGCCAGGGCTTCAAAGAACTCGGTGAGAC < 41bp 0.713120670525141 0.444912924610327 0.90380204 0.32471097 prediction 0.426241341050282 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79031754 chr17:79031756 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_87139 0 0 0 0 2 BAIAP2 chr17:79031767 5'GT 79031767 Upstream 12bp
chr17 79031757 79031757 1 + C T SKCM 79031754 + 79031734 79031774 41 CTGGCCAGCGAGAGCCAGGGCTCCAAAGAACTCGGTGAGAC CTGGCCAGCGAGAGCCAGGGCTCTAAAGAACTCGGTGAGAC < 41bp 0.713120670525141 0.496636420921458 0.90380204 0.85266006 prediction 0.426241341050282 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79031754 chr17:79031757 synonymous SNV . 0 24 hm5C_associated_SNPs_87140 0 0 0 0 2 BAIAP2 chr17:79031681 3'AG 79031681 Downstream 77bp
chr17 79031757 79031757 1 + C T SKCM 79031754 + 79031734 79031774 41 CTGGCCAGCGAGAGCCAGGGCTCCAAAGAACTCGGTGAGAC CTGGCCAGCGAGAGCCAGGGCTCTAAAGAACTCGGTGAGAC < 41bp 0.713120670525141 0.496636420921458 0.90380204 0.85266006 prediction 0.426241341050282 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79031754 chr17:79031757 synonymous SNV . 0 24 hm5C_associated_SNPs_87140 0 0 0 0 2 BAIAP2 chr17:79031767 5'GT 79031767 Upstream 11bp
chr18 21496564 21496564 1 + C T UCEC 21496562 + 21496542 21496582 41 TTTTGAAGGTACGGGCTATGCTCGAGTTCCAACTCAACCAC TTTTGAAGGTACGGGCTATGCTTGAGTTCCAACTCAACCAC < 41bp 0.845149095301654 0.632030252011974 0.19863006 0.032546878 prediction 0.42623768657936 Functional Loss - LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21496562 chr18:21496564 stopgain 0.998 0 23 hm5C_associated_SNPs_87141 0 0 0 0 2 LAMA3 chr18:21496515 3'AG 21496515 Downstream 50bp
chr18 21496564 21496564 1 + C T UCEC 21496562 + 21496542 21496582 41 TTTTGAAGGTACGGGCTATGCTCGAGTTCCAACTCAACCAC TTTTGAAGGTACGGGCTATGCTTGAGTTCCAACTCAACCAC < 41bp 0.845149095301654 0.632030252011974 0.19863006 0.032546878 prediction 0.42623768657936 Functional Loss - LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21496562 chr18:21496564 stopgain 0.998 0 23 hm5C_associated_SNPs_87141 0 0 0 0 2 LAMA3 chr18:21496659 5'GT 21496659 Upstream 96bp
chr17 72305497 72305497 1 - C T UCEC 72305500 - 72305480 72305520 41 CTGAGGGTGGGATCGCACTGCTCGAACATGAAGTCCCAGAT CTGAGGGTGGGATCGCACTGCTCAAACATGAAGTCCCAGAT < 41bp 0.784158008700401 0.571039391387268 0.12876531 0.12112698 prediction 0.426237234626265 Functional Loss - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72305500 chr17:72305497 synonymous SNV . 0 24 hm5C_associated_SNPs_87142 0 0 0 0 1 DNAI2 chr17:72305408 5'GT 72305408 Upstream 90bp
chr16 230981 230981 1 + C T rs201357046 230979 + 230959 230999 41 GCCTTGAGCGCTCGCCGCAGCTCCTGGGCCACTGCCTGCTG GCCTTGAGCGCTCGCCGCAGCTTCTGGGCCACTGCCTGCTG < 41bp 0.713118175488894 0.477071037691466 0.21964121 0.06848398 prediction 0.426236350977789 Functional Loss - HBQ1 ENSG00000086506 CDS Human protein_coding chr16:230979 chr16:230981 synonymous SNV . 0 23 hm5C_associated_SNPs_87143 0 0 1 0 1 HBQ1 chr16:230979 3'AG 230979 Downstream 3bp
chr3 70014091 70014091 1 + G A UCEC 70014088 + 70014068 70014108 41 TGGTGAATCGGATCATCAAGCAAGAACCCGTTCTTGAGAAC TGGTGAATCGGATCATCAAGCAAAAACCCGTTCTTGAGAAC < 41bp 0.750071945835654 0.536955071057905 0.88491154 0.46398774 prediction 0.426233749555498 Functional Loss - MITF ENSG00000187098 CDS Human protein_coding chr3:70014088 chr3:70014091 nonsynonymous SNV 0.946 3 24 hm5C_associated_SNPs_87144 4 0 0 0 1 MITF chr3:70013998 3'AG 70013998 Downstream 94bp
chr19 11039506 11039506 1 + C T rs144797438 11039504 + 11039484 11039524 41 CCAAGACGGAAGAGGATGGCCGCGGCGGCTCTGAGGAGATT CCAAGACGGAAGAGGATGGCCGTGGCGGCTCTGAGGAGATT < 41bp 0.772676173315709 0.559562843347381 0.16550887 0.102339804 prediction 0.426226659936656 Functional Loss - TIMM29 ENSG00000142444 CDS Human protein_coding chr19:11039504 chr19:11039506 nonsynonymous SNV 0.020 1 23 hm5C_associated_SNPs_87145 0 0 0 0 1 TIMM29 chr19:11039592 5'GT 11039592 Upstream 87bp
chr16 67650719 67650719 1 + C T UCEC 67650716 + 67650696 67650736 41 GTGGAGAATTGGTTCGGCATCGTCGTTACAAACACACCCAC GTGGAGAATTGGTTCGGCATCGTTGTTACAAACACACCCAC < 41bp 0.719996451750908 0.506883682859969 0.16695648 0.04090658 prediction 0.426225537781878 Functional Loss - CTCF ENSG00000102974 CDS Human protein_coding chr16:67650716 chr16:67650719 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_87147 1 0 1 0 2 CTCF chr16:67650648 3'AG 67650648 Downstream 72bp
chr16 67650719 67650719 1 + C T UCEC 67650716 + 67650696 67650736 41 GTGGAGAATTGGTTCGGCATCGTCGTTACAAACACACCCAC GTGGAGAATTGGTTCGGCATCGTTGTTACAAACACACCCAC < 41bp 0.719996451750908 0.506883682859969 0.16695648 0.04090658 prediction 0.426225537781878 Functional Loss - CTCF ENSG00000102974 CDS Human protein_coding chr16:67650716 chr16:67650719 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_87147 1 0 1 0 2 CTCF chr16:67650781 5'GT 67650781 Upstream 63bp
chr6 139202184 139202184 1 + G A SKCM 139202181 + 139202161 139202201 41 AGAGAAAATACGTGCAGATACTGGAAATTGTGAGAGATGTT AGAGAAAATACGTGCAGATACTGAAAATTGTGAGAGATGTT < 41bp 0.71310627884497 0.480983846663829 0.19626155 0.12886721 prediction 0.42621255768994 Functional Loss - ECT2L ENSG00000203734 CDS Human protein_coding chr6:139202181 chr6:139202184 nonsynonymous SNV 0.805 0 24 hm5C_associated_SNPs_87148 0 0 0 0 1 ECT2L chr6:139202094 3'AG 139202094 Downstream 91bp
chr19 13879458 13879458 1 + C T UCEC 13879455 + 13879435 13879475 41 GGCCCTACAACCAGGGAGCCCGGCTGACGGCCTTTGAGCTG GGCCCTACAACCAGGGAGCCCGGTTGACGGCCTTTGAGCTG < 41bp 0.713106187456995 0.499354721483146 0.5801796 0.43745726 prediction 0.42621237491399 Functional Loss - MRI1 ENSG00000037757 CDS Human protein_coding chr19:13879455 chr19:13879458 synonymous SNV . 0 24 hm5C_associated_SNPs_87149 0 0 1 0 3 MRI1 chr19:13879375 3'AG 13879375 Downstream 84bp
chr19 13879458 13879458 1 + C T UCEC 13879455 + 13879435 13879475 41 GGCCCTACAACCAGGGAGCCCGGCTGACGGCCTTTGAGCTG GGCCCTACAACCAGGGAGCCCGGTTGACGGCCTTTGAGCTG < 41bp 0.713106187456995 0.499354721483146 0.5801796 0.43745726 prediction 0.42621237491399 Functional Loss - MRI1 ENSG00000037757 CDS Human protein_coding chr19:13879455 chr19:13879458 synonymous SNV . 0 24 hm5C_associated_SNPs_87149 0 0 1 0 3 MRI1 chr19:13879429 3'AG 13879429 Downstream 30bp
chr19 13879458 13879458 1 + C T UCEC 13879455 + 13879435 13879475 41 GGCCCTACAACCAGGGAGCCCGGCTGACGGCCTTTGAGCTG GGCCCTACAACCAGGGAGCCCGGTTGACGGCCTTTGAGCTG < 41bp 0.713106187456995 0.499354721483146 0.5801796 0.43745726 prediction 0.42621237491399 Functional Loss - MRI1 ENSG00000037757 CDS Human protein_coding chr19:13879455 chr19:13879458 synonymous SNV . 0 24 hm5C_associated_SNPs_87149 0 0 1 0 3 MRI1 chr19:13879551 5'GT 13879551 Upstream 94bp
chr17 45331285 45331285 1 + C T rs548495900 45331283 + 45331263 45331303 41 GACTGTGCTGGCGCTGGGGGCGCTGGCGGGCGTTGGCGTAG GACTGTGCTGGCGCTGGGGGCGTTGGCGGGCGTTGGCGTAG < 41bp 0.753513578715884 0.540408377156073 0.8980254 0.9053175 prediction 0.426210403119622 Functional Loss - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45331283 chr17:45331285 synonymous SNV . 0 23 hm5C_associated_SNPs_87150 1 0 0 0 1 ITGB3 chr17:45331306 5'GT 45331306 Upstream 22bp
chr7 6193432 6193432 1 + G T CESC 6193429 + 6193409 6193449 41 CCTCCCGAGGACCGCGACGCCGAGCCTCAGCCTGGCAGCCC CCTCCCGAGGACCGCGACGCCGATCCTCAGCCTGGCAGCCC < 41bp 0.713103043947186 0.313676126684666 0.66246533 0.5670954 prediction 0.426206087894373 Functional Loss - USP42 ENSG00000106346 CDS Human protein_coding chr7:6193429 chr7:6193432 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_87153 0 0 1 0 1 USP42 chr7:6193387 3'AG 6193387 Downstream 46bp
chr2 101611915 101611915 1 + C T BLCA 101611912 + 101611892 101611932 41 CAGCAGGACTCGCTACTTCTCTCCACCTACTCACAACAGCC CAGCAGGACTCGCTACTTCTCTCTACCTACTCACAACAGCC < 41bp 0.713102694662768 0.495238238768659 0.9252533 0.80906326 prediction 0.426205389325537 Functional Loss - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101611912 chr2:101611915 synonymous SNV . 0 24 hm5C_associated_SNPs_87154 0 0 1 1 1 NPAS2 chr2:101611862 3'AG 101611862 Downstream 54bp
chr16 1396257 1396257 1 + G A COAD 1396254 + 1396234 1396274 41 CTGGCATGGCCAGAGGGGGCCACGGGGCCCGAGGGGGTGCT CTGGCATGGCCAGAGGGGGCCACAGGGCCCGAGGGGGTGCT < 41bp 0.713100207125959 0.467228733712347 0.9019551 0.87575513 prediction 0.426200414251918 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1396254 chr16:1396257 synonymous SNV . 0 24 hm5C_associated_SNPs_87160 0 0 1 0 1 BAIAP3 chr16:1396171 3'AG 1396171 Downstream 87bp
chr12 4870216 4870216 1 + C T COAD 4870213 + 4870193 4870233 41 AAGCCCTACGCCTTGGATCTCACCGCTGCCTTGAAGCGCAA AAGCCCTACGCCTTGGATCTCACTGCTGCCTTGAAGCGCAA < 41bp 0.720960872984255 0.507865486017034 0.2557323 0.14053959 prediction 0.426190773934444 Functional Loss - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4870213 chr12:4870216 synonymous SNV . 0 24 hm5C_associated_SNPs_87162 0 0 0 0 2 GALNT8 chr12:4870124 3'AG 4870124 Downstream 93bp
chr12 4870216 4870216 1 + C T COAD 4870213 + 4870193 4870233 41 AAGCCCTACGCCTTGGATCTCACCGCTGCCTTGAAGCGCAA AAGCCCTACGCCTTGGATCTCACTGCTGCCTTGAAGCGCAA < 41bp 0.720960872984255 0.507865486017034 0.2557323 0.14053959 prediction 0.426190773934444 Functional Loss - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4870213 chr12:4870216 synonymous SNV . 0 24 hm5C_associated_SNPs_87162 0 0 0 0 2 GALNT8 chr12:4870309 5'GT 4870309 Upstream 94bp
chr20 37384634 37384634 1 + C T rs114985200 37384632 + 37384612 37384652 41 AGCAGGCTAAGCAGAAAATCCTCCAAGCGGAAGTCAACCTC AGCAGGCTAAGCAGAAAATCCTTCAAGCGGAAGTCAACCTC < 41bp 0.886148445892326 0.67305478974173 0.94896966 0.7049995 prediction 0.426187312301191 Functional Loss - ACTR5 ENSG00000101442 CDS Human protein_coding chr20:37384632 chr20:37384634 synonymous SNV . 0 23 hm5C_associated_SNPs_87166 0 0 1 0 1 ACTR5 chr20:37384682 5'GT 37384682 Upstream 49bp
chr1 109742532 109742532 1 + C T UCEC 109742530 + 109742510 109742550 41 TTCCACTTCCTGTGGGAGAGCGCGGCTGCTTGCCCGCTCTG TTCCACTTCCTGTGGGAGAGCGTGGCTGCTTGCCCGCTCTG < 41bp 0.713091466386291 0.450058628254972 0.9125894 0.8990469 prediction 0.426182932772582 Functional Loss - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109742530 chr1:109742532 nonsynonymous SNV 0.471 0 23 hm5C_associated_SNPs_87167 0 0 0 0 2 KIAA1324 chr1:109742476 3'AG 109742476 Downstream 57bp
chr1 109742532 109742532 1 + C T UCEC 109742530 + 109742510 109742550 41 TTCCACTTCCTGTGGGAGAGCGCGGCTGCTTGCCCGCTCTG TTCCACTTCCTGTGGGAGAGCGTGGCTGCTTGCCCGCTCTG < 41bp 0.713091466386291 0.450058628254972 0.9125894 0.8990469 prediction 0.426182932772582 Functional Loss - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109742530 chr1:109742532 nonsynonymous SNV 0.471 0 23 hm5C_associated_SNPs_87167 0 0 0 0 2 KIAA1324 chr1:109742602 5'GT 109742602 Upstream 71bp
chr5 169101380 169101380 1 + G A SKCM 169101377 + 169101357 169101397 41 GTGGAGGTCCCAGCTTCTCTCAGGAACCTTACCCAAGGATG GTGGAGGTCCCAGCTTCTCTCAGAAACCTTACCCAAGGATG < 41bp 0.764531615448547 0.551445319011887 0.9000803 0.8796285 prediction 0.426172592873318 Functional Loss - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169101377 chr5:169101380 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_87170 0 0 0 0 2 DOCK2 chr5:169101301 3'AG 169101301 Downstream 80bp
chr5 169101380 169101380 1 + G A SKCM 169101377 + 169101357 169101397 41 GTGGAGGTCCCAGCTTCTCTCAGGAACCTTACCCAAGGATG GTGGAGGTCCCAGCTTCTCTCAGAAACCTTACCCAAGGATG < 41bp 0.764531615448547 0.551445319011887 0.9000803 0.8796285 prediction 0.426172592873318 Functional Loss - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169101377 chr5:169101380 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_87170 0 0 0 0 2 DOCK2 chr5:169101449 5'GT 169101449 Upstream 70bp
chr18 59203799 59203799 1 + G T LUAD 59203797 + 59203777 59203817 41 TACAACAGGTGCCCTAATGACAGCAAGACCCCTAGACCGGG TACAACAGGTGCCCTAATGACATCAAGACCCCTAGACCGGG < 41bp 0.713085765764119 0.36779592499318 0.13265383 0.028501242 prediction 0.426171531528237 Functional Loss - CDH20 ENSG00000101542 CDS Human protein_coding chr18:59203797 chr18:59203799 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_87171 0 0 0 0 2 CDH20 chr18:59203726 3'AG 59203726 Downstream 74bp
chr18 59203799 59203799 1 + G T LUAD 59203797 + 59203777 59203817 41 TACAACAGGTGCCCTAATGACAGCAAGACCCCTAGACCGGG TACAACAGGTGCCCTAATGACATCAAGACCCCTAGACCGGG < 41bp 0.713085765764119 0.36779592499318 0.13265383 0.028501242 prediction 0.426171531528237 Functional Loss - CDH20 ENSG00000101542 CDS Human protein_coding chr18:59203797 chr18:59203799 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_87171 0 0 0 0 2 CDH20 chr18:59203862 5'GT 59203862 Upstream 64bp
chr15 42855965 42855965 1 + G T LIHC 42855963 + 42855943 42855983 41 TCAGATATATGGTACATTTGCTGGAGTTGGCTGTGACTTTC TCAGATATATGGTACATTTGCTTGAGTTGGCTGTGACTTTC < 41bp 0.896672786074548 0.683588057218938 0.41153705 0.20140675 prediction 0.42616945771122 Functional Loss - HAUS2 ENSG00000137814 CDS Human protein_coding chr15:42855963 chr15:42855965 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_87172 0 0 1 0 2 HAUS2 chr15:42855947 3'AG 42855947 Downstream 19bp
chr15 42855965 42855965 1 + G T LIHC 42855963 + 42855943 42855983 41 TCAGATATATGGTACATTTGCTGGAGTTGGCTGTGACTTTC TCAGATATATGGTACATTTGCTTGAGTTGGCTGTGACTTTC < 41bp 0.896672786074548 0.683588057218938 0.41153705 0.20140675 prediction 0.42616945771122 Functional Loss - HAUS2 ENSG00000137814 CDS Human protein_coding chr15:42855963 chr15:42855965 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_87172 0 0 1 0 2 HAUS2 chr15:42856055 5'GT 42856055 Upstream 91bp
chr7 70880948 70880948 1 + G T THYM 70880946 + 70880926 70880966 41 TGGTGAAGGTGGTAAGAAATCAGAAGAGGGAAGGCCTGATC TGGTGAAGGTGGTAAGAAATCATAAGAGGGAAGGCCTGATC < 41bp 0.89587473005658 0.6827943090391 0.6192372 0.2800529 prediction 0.426160842034961 Functional Loss - GALNT17 ENSG00000185274 CDS Human protein_coding chr7:70880946 chr7:70880948 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_87174 0 0 0 0 1 GALNT17 chr7:70880875 3'AG 70880875 Downstream 74bp
chr16 3077020 3077020 1 + G A UCEC 3077017 + 3076997 3077037 41 CCCTCCCCATCCCAGGAGTGCTCGAGGCCCCACAATGGGCG CCCTCCCCATCCCAGGAGTGCTCAAGGCCCCACAATGGGCG < 41bp 0.813259906104411 0.600181072819395 0.4189493 0.31452602 prediction 0.426157666570032 Functional Loss - THOC6 ENSG00000131652 CDS Human protein_coding chr16:3077017 chr16:3077020 synonymous SNV . 0 24 hm5C_associated_SNPs_87176 0 0 1 0 2 THOC6 chr16:3077012 3'AG 3077012 Downstream 9bp
chr16 3077020 3077020 1 + G A UCEC 3077017 + 3076997 3077037 41 CCCTCCCCATCCCAGGAGTGCTCGAGGCCCCACAATGGGCG CCCTCCCCATCCCAGGAGTGCTCAAGGCCCCACAATGGGCG < 41bp 0.813259906104411 0.600181072819395 0.4189493 0.31452602 prediction 0.426157666570032 Functional Loss - THOC6 ENSG00000131652 CDS Human protein_coding chr16:3077017 chr16:3077020 synonymous SNV . 0 24 hm5C_associated_SNPs_87176 0 0 1 0 2 THOC6 chr16:3077074 5'GT 3077074 Upstream 55bp
chr17 48750362 48750362 1 + C T STAD 48750359 + 48750339 48750379 41 ACCTGTCTGGGGGCCAGCGGCAGCGGGTCAGTCTGGCTCGA ACCTGTCTGGGGGCCAGCGGCAGTGGGTCAGTCTGGCTCGA < 41bp 0.721660749144598 0.508582641826584 0.8943928 0.83494353 prediction 0.426156214636027 Functional Loss - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48750359 chr17:48750362 nonsynonymous SNV 0.980 5 24 hm5C_associated_SNPs_87177 0 0 1 0 1 ABCC3 chr17:48750332 3'AG 48750332 Downstream 31bp
chr20 34618321 34618321 1 + G A SKCM 34618318 + 34618298 34618338 41 AAGTTCCTCCAGCAGAACAGCTGGAATATCTTTCGGAAGGA AAGTTCCTCCAGCAGAACAGCTGAAATATCTTTCGGAAGGA < 41bp 0.713077576919367 0.473779448483376 0.8595586 0.85422766 prediction 0.426155153838734 Functional Loss - CNBD2 ENSG00000149646 CDS Human protein_coding chr20:34618318 chr20:34618321 stopgain 0.019 0 24 hm5C_associated_SNPs_87178 0 0 0 1 1 CNBD2 chr20:34618279 3'AG 34618279 Downstream 43bp
chr8 105026781 105026781 1 + C T SKCM 105026778 + 105026758 105026798 41 CCAGACAAGCCCATCAAGTACTCCAGTCGCAGGACGAAGGG CCAGACAAGCCCATCAAGTACTCTAGTCGCAGGACGAAGGG < 41bp 0.718992109580133 0.505914756726292 0.9289609 0.34853774 prediction 0.426154705707682 Functional Loss - RIMS2 ENSG00000176406 CDS Human protein_coding chr8:105026778 chr8:105026781 nonsynonymous SNV 0.957 3 24 hm5C_associated_SNPs_87179 0 0 0 0 2 RIMS2 chr8:105026734 3'AG 105026734 Downstream 48bp
chr8 105026781 105026781 1 + C T SKCM 105026778 + 105026758 105026798 41 CCAGACAAGCCCATCAAGTACTCCAGTCGCAGGACGAAGGG CCAGACAAGCCCATCAAGTACTCTAGTCGCAGGACGAAGGG < 41bp 0.718992109580133 0.505914756726292 0.9289609 0.34853774 prediction 0.426154705707682 Functional Loss - RIMS2 ENSG00000176406 CDS Human protein_coding chr8:105026778 chr8:105026781 nonsynonymous SNV 0.957 3 24 hm5C_associated_SNPs_87179 0 0 0 0 2 RIMS2 chr8:105026843 5'GT 105026843 Upstream 63bp
chr6 160219129 160219129 1 + C T STAD 160219126 + 160219106 160219146 41 TGACAGAAGGTGGTGTGGTTCTACGGGAACCTCAGAGAATC TGACAGAAGGTGGTGTGGTTCTATGGGAACCTCAGAGAATC < 41bp 0.714397648417366 0.501325687161516 0.105697125 0.15700546 prediction 0.426143922511698 Functional Loss - MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160219126 chr6:160219129 nonsynonymous SNV 0.955 1 24 hm5C_associated_SNPs_87182 0 0 1 0 1 MRPL18 chr6:160219084 3'AG 160219084 Downstream 46bp
chr10 122334761 122334761 1 + C T CESC 122334758 + 122334738 122334778 41 GCTGCCATCCTGCCCTTGTACTGCGCCATGATGATTGCCCT GCTGCCATCCTGCCCTTGTACTGTGCCATGATGATTGCCCT < 41bp 0.713070902041713 0.496632586935537 0.32789424 0.24598464 prediction 0.426141804083426 Functional Loss - PLPP4 ENSG00000203805 CDS Human protein_coding chr10:122334758 chr10:122334761 synonymous SNV . 0 24 hm5C_associated_SNPs_87184 0 0 0 0 1 PLPP4 chr10:122334813 5'GT 122334813 Upstream 53bp
chr2 239025589 239025589 1 + G A LUSC 239025586 + 239025566 239025606 41 ACCACGTGGACCCCTCCCTGCGGGATGAAGATGGTTACACG ACCACGTGGACCCCTCCCTGCGGAATGAAGATGGTTACACG < 41bp 0.803512147759122 0.59044440873793 0.88733315 0.68168163 prediction 0.426135478042384 Functional Loss - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239025586 chr2:239025589 nonsynonymous SNV 0.886 4 24 hm5C_associated_SNPs_87185 0 0 0 0 2 ESPNL chr2:239025544 3'AG 239025544 Downstream 46bp
chr2 239025589 239025589 1 + G A LUSC 239025586 + 239025566 239025606 41 ACCACGTGGACCCCTCCCTGCGGGATGAAGATGGTTACACG ACCACGTGGACCCCTCCCTGCGGAATGAAGATGGTTACACG < 41bp 0.803512147759122 0.59044440873793 0.88733315 0.68168163 prediction 0.426135478042384 Functional Loss - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239025586 chr2:239025589 nonsynonymous SNV 0.886 4 24 hm5C_associated_SNPs_87185 0 0 0 0 2 ESPNL chr2:239025675 5'GT 239025675 Upstream 87bp
chr12 72338426 72338426 1 + G T UCEC 72338424 + 72338404 72338444 41 GAGTTAGACAAATGCTCTCACAGAGTTCTCATGTATGGTTC GAGTTAGACAAATGCTCTCACATAGTTCTCATGTATGGTTC < 41bp 0.713065913453592 0.356425394576298 0.4937765 0.10940057 prediction 0.426131826907185 Functional Loss - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72338424 chr12:72338426 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_87186 0 0 0 0 2 TPH2 chr12:72338366 3'AG 72338366 Downstream 61bp
chr12 72338426 72338426 1 + G T UCEC 72338424 + 72338404 72338444 41 GAGTTAGACAAATGCTCTCACAGAGTTCTCATGTATGGTTC GAGTTAGACAAATGCTCTCACATAGTTCTCATGTATGGTTC < 41bp 0.713065913453592 0.356425394576298 0.4937765 0.10940057 prediction 0.426131826907185 Functional Loss - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72338424 chr12:72338426 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_87186 0 0 0 0 2 TPH2 chr12:72338466 5'GT 72338466 Upstream 41bp
chr3 121825321 121825321 1 + G A BLCA 121825318 + 121825298 121825338 41 TATTCTGGAAACTGACAAGACGCGGCTTTTATCTTCACCTT TATTCTGGAAACTGACAAGACGCAGCTTTTATCTTCACCTT < 41bp 0.787740940254618 0.574676120520454 0.24306768 0.13214836 prediction 0.426129639468327 Functional Loss - CD86 ENSG00000114013 CDS Human protein_coding chr3:121825318 chr3:121825321 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_87187 0 0 0 0 1 CD86 chr3:121825347 5'GT 121825347 Upstream 27bp
chr10 121586162 121586162 1 + G A UCEC 121586159 + 121586139 121586179 41 GTAGGAAGAGCAGTAAACCTCACGAAGACATCATTGGTATC GTAGGAAGAGCAGTAAACCTCACAAAGACATCATTGGTATC < 41bp 0.713061440097168 0.487003445673931 0.41451004 0.10886407 prediction 0.426122880194336 Functional Loss - INPP5F ENSG00000198825 CDS Human protein_coding chr10:121586159 chr10:121586162 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_87188 0 0 0 0 1 INPP5F chr10:121586143 3'AG 121586143 Downstream 20bp
chr3 53844087 53844087 1 + C T SKCM 53844084 + 53844064 53844104 41 GACCCGGTCGTGGGCCACCCCTCCAGCAACCCCTCCCTACC GACCCGGTCGTGGGCCACCCCTCTAGCAACCCCTCCCTACC < 41bp 0.743419882246557 0.53036278253741 0.96273893 0.9409558 prediction 0.426114199418294 Functional Loss - CACNA1D ENSG00000157388 CDS Human protein_coding chr3:53844084 chr3:53844087 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_87190 0 0 0 0 2 CACNA1D chr3:53843989 3'AG 53843989 Downstream 99bp
chr3 53844087 53844087 1 + C T SKCM 53844084 + 53844064 53844104 41 GACCCGGTCGTGGGCCACCCCTCCAGCAACCCCTCCCTACC GACCCGGTCGTGGGCCACCCCTCTAGCAACCCCTCCCTACC < 41bp 0.743419882246557 0.53036278253741 0.96273893 0.9409558 prediction 0.426114199418294 Functional Loss - CACNA1D ENSG00000157388 CDS Human protein_coding chr3:53844084 chr3:53844087 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_87190 0 0 0 0 2 CACNA1D chr3:53844005 3'AG 53844005 Downstream 83bp
chr4 70156378 70156378 1 + G T LUAD 70156375 + 70156355 70156395 41 GCATCTATGAGGCAATCTACCATGGGATCCCTATGGTAGGC GCATCTATGAGGCAATCTACCATTGGATCCCTATGGTAGGC < 41bp 0.713049902467975 0.323540182610838 0.8167515 0.06807709 prediction 0.426099804935949 Functional Loss - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70156375 chr4:70156378 nonsynonymous SNV 0.305 4 24 hm5C_associated_SNPs_87194 0 0 0 0 1 UGT2B28 chr4:70156310 3'AG 70156310 Downstream 69bp
chr1 44157236 44157236 1 + T C STAD 44157235 + 44157215 44157255 41 CTCGGTGTTCAGCCAATGCCCTAGAGGAGGTGAGTGATCCC CTCGGTGTTCAGCCAATGCCCCAGAGGAGGTGAGTGATCCC < 41bp 0.815663582245022 0.60261667930367 0.23750836 0.35151726 prediction 0.426093805882704 Functional Loss - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44157235 chr1:44157236 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_87196 0 0 0 0 2 KDM4A chr1:44157167 3'AG 44157167 Downstream 70bp
chr1 44157236 44157236 1 + T C STAD 44157235 + 44157215 44157255 41 CTCGGTGTTCAGCCAATGCCCTAGAGGAGGTGAGTGATCCC CTCGGTGTTCAGCCAATGCCCCAGAGGAGGTGAGTGATCCC < 41bp 0.815663582245022 0.60261667930367 0.23750836 0.35151726 prediction 0.426093805882704 Functional Loss - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44157235 chr1:44157236 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_87196 0 0 0 0 2 KDM4A chr1:44157243 5'GT 44157243 Upstream 8bp
chr2 47278910 47278910 1 + C T PRAD 47278907 + 47278887 47278927 41 TCCCGGCGGGCTTCGTCCATCGCCGCCTCCCGGCTGGAGGA TCCCGGCGGGCTTCGTCCATCGCTGCCTCCCGGCTGGAGGA < 41bp 0.722554667517237 0.509508033978919 0.32220298 0.23322245 prediction 0.426093267076637 Functional Loss - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47278907 chr2:47278910 synonymous SNV . 0 24 hm5C_associated_SNPs_87197 0 0 1 0 1 TTC7A chr2:47278885 3'AG 47278885 Downstream 26bp
chr4 3449330 3449330 1 + G A rs16844398 3449327 + 3449307 3449347 41 TACATCCCGTACACCCTGTACTCGGTGTTCAACCCCAGCGA TACATCCCGTACACCCTGTACTCAGTGTTCAACCCCAGCGA < 41bp 0.713045214937832 0.452231859807968 0.1202932 0.033311456 prediction 0.426090429875665 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3449327 chr4:3449330 synonymous SNV . 0 24 hm5C_associated_SNPs_87198 0 0 0 0 1 HGFAC chr4:3449358 5'GT 3449358 Upstream 29bp
chr1 16352700 16352700 1 + C T UCEC 16352697 + 16352677 16352717 41 GGGGCCAAGGTGGTGGGCCTCTCCTGCACCCTGGCCACCGG GGGGCCAAGGTGGTGGGCCTCTCTTGCACCCTGGCCACCGG < 41bp 0.74537740855819 0.532332812529445 0.7398132 0.33486652 prediction 0.426089192057488 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16352697 chr1:16352700 synonymous SNV . 0 24 hm5C_associated_SNPs_87200 0 0 0 0 2 CLCNKA chr1:16352603 3'AG 16352603 Downstream 98bp
chr1 16352700 16352700 1 + C T UCEC 16352697 + 16352677 16352717 41 GGGGCCAAGGTGGTGGGCCTCTCCTGCACCCTGGCCACCGG GGGGCCAAGGTGGTGGGCCTCTCTTGCACCCTGGCCACCGG < 41bp 0.74537740855819 0.532332812529445 0.7398132 0.33486652 prediction 0.426089192057488 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16352697 chr1:16352700 synonymous SNV . 0 24 hm5C_associated_SNPs_87200 0 0 0 0 2 CLCNKA chr1:16352742 5'GT 16352742 Upstream 43bp
chrX 80532622 80532622 1 + G A UCEC 80532619 + 80532599 80532639 41 TGAAAATAGTCGACCAGCCACAGGTTACCCCCTGCCACCTC TGAAAATAGTCGACCAGCCACAGATTACCCCCTGCCACCTC < 41bp 0.791825952842212 0.578781908964662 0.4011839 0.114102334 prediction 0.426088087755099 Functional Loss - SH3BGRL ENSG00000131171 CDS Human protein_coding chrX:80532619 chrX:80532622 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_87201 0 0 1 0 1 SH3BGRL chrX:80532668 5'GT 80532668 Upstream 47bp
chr19 58130842 58130842 1 + T C LIHC 58130841 + 58130821 58130861 41 GGCTGCCTGAGAGGGCATGACTCTAGTCACAGCAGGAGGGG GGCTGCCTGAGAGGGCATGACCCTAGTCACAGCAGGAGGGG < 41bp 0.813469570321538 0.600425818768355 0.8616253 0.118591666 prediction 0.426087503106365 Functional Loss - ZNF134 ENSG00000213762 CDS Human protein_coding chr19:58130841 chr19:58130842 synonymous SNV . 0 22 hm5C_associated_SNPs_87202 0 0 1 0 2 ZNF134 chr19:58130780 3'AG 58130780 Downstream 63bp
chr19 58130842 58130842 1 + T C LIHC 58130841 + 58130821 58130861 41 GGCTGCCTGAGAGGGCATGACTCTAGTCACAGCAGGAGGGG GGCTGCCTGAGAGGGCATGACCCTAGTCACAGCAGGAGGGG < 41bp 0.813469570321538 0.600425818768355 0.8616253 0.118591666 prediction 0.426087503106365 Functional Loss - ZNF134 ENSG00000213762 CDS Human protein_coding chr19:58130841 chr19:58130842 synonymous SNV . 0 22 hm5C_associated_SNPs_87202 0 0 1 0 2 ZNF134 chr19:58130876 5'GT 58130876 Upstream 35bp
chr10 12867633 12867633 1 + T C OV 12867632 + 12867612 12867652 41 AACTACACCTCGGCAGCAGCCTGGACAGTTCAAATGCAAGT AACTACACCTCGGCAGCAGCCCGGACAGTTCAAATGCAAGT < 41bp 0.713041118030508 0.463148718969493 0.21017712 0.12448925 prediction 0.426082236061015 Functional Loss - CAMK1D ENSG00000183049 CDS Human protein_coding chr10:12867632 chr10:12867633 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_87203 0 0 0 0 2 CAMK1D chr10:12867572 3'AG 12867572 Downstream 62bp
chr10 12867633 12867633 1 + T C OV 12867632 + 12867612 12867652 41 AACTACACCTCGGCAGCAGCCTGGACAGTTCAAATGCAAGT AACTACACCTCGGCAGCAGCCCGGACAGTTCAAATGCAAGT < 41bp 0.713041118030508 0.463148718969493 0.21017712 0.12448925 prediction 0.426082236061015 Functional Loss - CAMK1D ENSG00000183049 CDS Human protein_coding chr10:12867632 chr10:12867633 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_87203 0 0 0 0 2 CAMK1D chr10:12867689 5'GT 12867689 Upstream 57bp
chr1 78395171 78395171 1 + T C STAD 78395170 + 78395150 78395190 41 GGAAGAAAAGAAGGCGTTTGCTGAAGCAAGGAGAAATATGG GGAAGAAAAGAAGGCGTTTGCCGAAGCAAGGAGAAATATGG < 41bp 0.809149626335917 0.596120173737904 0.8065945 0.8783083 prediction 0.426058905196026 Functional Loss - NEXN ENSG00000162614 CDS Human protein_coding chr1:78395170 chr1:78395171 synonymous SNV . 0 22 hm5C_associated_SNPs_87209 0 0 1 0 1 NEXN chr1:78395189 5'GT 78395189 Upstream 19bp
chr3 49749980 49749980 1 + A C CESC 49749979 + 49749959 49749999 41 CATTGAGCACGGTGATCGCACAGGGTCTCTCTTTGCCTTCA CATTGAGCACGGTGATCGCACCGGGTCTCTCTTTGCCTTCA < 41bp 0.839364856036048 0.626336711777051 0.9309563 0.92506534 prediction 0.426056288517994 Functional Loss - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49749979 chr3:49749980 synonymous SNV . 0 22 hm5C_associated_SNPs_87212 0 0 1 1 1 RNF123 chr3:49749912 3'AG 49749912 Downstream 69bp
chr18 61564406 61564406 1 + G T GBM 61564403 + 61564383 61564423 41 CATCCACAGGGAATTATTTACTGGAAAGTGTCAATAAGCTG CATCCACAGGGAATTATTTACTGTAAAGTGTCAATAAGCTG < 41bp 0.930301733653439 0.717274245859535 0.2127594 0.09776196 prediction 0.426054975587808 Functional Loss - SERPINB2 ENSG00000197632 CDS Human other chr18:61564403 chr18:61564406 stopgain 0.808 1 24 hm5C_associated_SNPs_87213 0 0 0 0 1 SERPINB2 chr18:61564453 5'GT 61564453 Upstream 48bp
chr22 44527492 44527492 1 + C T HNSC 44527489 + 44527469 44527509 41 TGCGGCCCCGAGGCTGGGCGCTCCGGTGGAGCGTGGACTGT TGCGGCCCCGAGGCTGGGCGCTCTGGTGGAGCGTGGACTGT < 41bp 0.713021088969098 0.481198806860654 0.17717949 0.2978434 prediction 0.426042177938195 Functional Loss - PARVB ENSG00000188677 CDS Human protein_coding chr22:44527489 chr22:44527492 nonsynonymous SNV 0.510 2 24 hm5C_associated_SNPs_87214 0 0 0 0 1 PARVB chr22:44527507 5'GT 44527507 Upstream 16bp
chr18 12115415 12115415 1 + G A rs139193046 12115412 + 12115392 12115432 41 GTTAAAAGCCAAATATATTTCACGGATGACCTTAATGACAT GTTAAAAGCCAAATATATTTCACAGATGACCTTAATGACAT < 41bp 0.728258242332217 0.515237470870377 0.022763222 0.029666185 prediction 0.426041542923679 Functional Loss - ANKRD62 ENSG00000181626 CDS Human protein_coding chr18:12115412 chr18:12115415 synonymous SNV . 0 24 hm5C_associated_SNPs_87215 0 0 0 0 1 ANKRD62 chr18:12115392 3'AG 12115392 Downstream 24bp
chr1 150960656 150960656 1 + G A SKCM 150960653 + 150960633 150960673 41 GAGATGCTCAGGTGGCTCTGCTCGGCCTAGGTAGGGGCCTG GAGATGCTCAGGTGGCTCTGCTCAGCCTAGGTAGGGGCCTG < 41bp 0.713020647932971 0.464425789901865 0.51180077 0.24920127 prediction 0.426041295865942 Functional Loss - ANXA9 ENSG00000143412 CDS Human protein_coding chr1:150960653 chr1:150960656 nonsynonymous SNV 0.095 0 24 hm5C_associated_SNPs_87217 0 0 0 0 1 ANXA9 chr1:150960662 5'GT 150960662 Upstream 7bp
chr10 122334704 122334704 1 + C T UCEC 122334701 + 122334681 122334721 41 GCGGGCAAGCTGCACTGCTTCACCGAGAGTGGGCGGGGAAA GCGGGCAAGCTGCACTGCTTCACTGAGAGTGGGCGGGGAAA < 41bp 0.739167579021481 0.526147184020484 0.33670592 0.24036574 prediction 0.426040790001995 Functional Loss - PLPP4 ENSG00000203805 CDS Human protein_coding chr10:122334701 chr10:122334704 synonymous SNV . 0 24 hm5C_associated_SNPs_87218 0 0 0 0 1 PLPP4 chr10:122334643 3'AG 122334643 Downstream 62bp
chr3 37035080 37035080 1 + A C rs369737664 37035079 + 37035059 37035099 41 TATTCGGCGGCTGGACGAGACAGTGGTGAACCGCATCGCGG TATTCGGCGGCTGGACGAGACCGTGGTGAACCGCATCGCGG < 41bp 0.724802603787284 0.511787361699823 0.81003964 0.6742105 prediction 0.426030484174922 Functional Loss - MLH1 ENSG00000076242 CDS Human protein_coding chr3:37035079 chr3:37035080 synonymous SNV . 0 22 hm5C_associated_SNPs_87222 3 0 1 0 1 MLH1 chr3:37035154 5'GT 37035154 Upstream 75bp
chr4 949582 949582 1 + C T HNSC 949580 + 949560 949600 41 GCTCACCCAGTGGAAGTCTTCTCGTTTGACCTCCACGAGCC GCTCACCCAGTGGAAGTCTTCTTGTTTGACCTCCACGAGCC < 41bp 0.84611036444357 0.633096614629408 0.02139157 0.03385502 prediction 0.426027499628323 Functional Loss - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:949580 chr4:949582 nonsynonymous SNV 0.024 2 23 hm5C_associated_SNPs_87223 0 0 0 0 2 TMEM175 chr4:949543 3'AG 949543 Downstream 40bp
chr4 949582 949582 1 + C T HNSC 949580 + 949560 949600 41 GCTCACCCAGTGGAAGTCTTCTCGTTTGACCTCCACGAGCC GCTCACCCAGTGGAAGTCTTCTTGTTTGACCTCCACGAGCC < 41bp 0.84611036444357 0.633096614629408 0.02139157 0.03385502 prediction 0.426027499628323 Functional Loss - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:949580 chr4:949582 nonsynonymous SNV 0.024 2 23 hm5C_associated_SNPs_87223 0 0 0 0 2 TMEM175 chr4:949678 5'GT 949678 Upstream 97bp
chr1 52874286 52874286 1 + T C UCEC 52874285 + 52874265 52874305 41 TTACATGAGGCTGACAGGCACTGCAATTGATTGCTACAAGT TTACATGAGGCTGACAGGCACCGCAATTGATTGCTACAAGT < 41bp 0.713008774499144 0.450079747019662 0.22435054 0.15521333 prediction 0.426017548998288 Functional Loss - PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52874285 chr1:52874286 synonymous SNV . 0 22 hm5C_associated_SNPs_87226 0 0 1 0 2 PRPF38A chr1:52874241 3'AG 52874241 Downstream 46bp
chr1 52874286 52874286 1 + T C UCEC 52874285 + 52874265 52874305 41 TTACATGAGGCTGACAGGCACTGCAATTGATTGCTACAAGT TTACATGAGGCTGACAGGCACCGCAATTGATTGCTACAAGT < 41bp 0.713008774499144 0.450079747019662 0.22435054 0.15521333 prediction 0.426017548998288 Functional Loss - PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52874285 chr1:52874286 synonymous SNV . 0 22 hm5C_associated_SNPs_87226 0 0 1 0 2 PRPF38A chr1:52874362 5'GT 52874362 Upstream 77bp
chr10 101715440 101715440 1 + G A CESC 101715437 + 101715417 101715457 41 CTCCTTTCCGGCAGCTCCTGCTCGGTGATTAACTTTGAGGA CTCCTTTCCGGCAGCTCCTGCTCAGTGATTAACTTTGAGGA < 41bp 0.713007255819259 0.463330576290713 0.54775923 0.25135604 prediction 0.426014511638517 Functional Loss - DNMBP ENSG00000107554 CDS Human protein_coding chr10:101715437 chr10:101715440 synonymous SNV . 0 24 hm5C_associated_SNPs_87227 0 0 0 0 1 DNMBP chr10:101715431 3'AG 101715431 Downstream 10bp
chr5 76646928 76646928 1 + G A rs551325620 76646925 + 76646905 76646945 41 TACTATGCCAGACGGAAATCCGGGGACAGCATCCAACAGCA TACTATGCCAGACGGAAATCCGGAGACAGCATCCAACAGCA < 41bp 0.808407651368996 0.595404378343667 0.92846596 0.89924 prediction 0.426006546050658 Functional Loss - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76646925 chr5:76646928 synonymous SNV . 0 24 hm5C_associated_SNPs_87229 0 0 0 0 1 PDE8B chr5:76646890 3'AG 76646890 Downstream 39bp
chr7 44153254 44153254 1 + G A GBM 44153251 + 44153231 44153271 41 GAGTACCGCGTGACAGCCCACGCGGAGGGCTACACCCCGAG GAGTACCGCGTGACAGCCCACGCAGAGGGCTACACCCCGAG < 41bp 0.713002827006892 0.470290611505652 0.6469419 0.19791642 prediction 0.426005654013784 Functional Loss - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44153251 chr7:44153254 synonymous SNV . 0 24 hm5C_associated_SNPs_87230 0 0 0 0 1 AEBP1 chr7:44153193 3'AG 44153193 Downstream 62bp
chr5 72427368 72427368 1 + G A UCEC 72427365 + 72427345 72427385 41 TTCTCTCTCCTTCTCTTTAGCAGGACCCCAACTTCAGAGGG TTCTCTCTCCTTCTCTTTAGCAGAACCCCAACTTCAGAGGG < 41bp 0.776284058077935 0.563281542984155 0.8839545 0.42620248 prediction 0.42600503018756 Functional Loss - TMEM171 ENSG00000157111 CDS Human protein_coding chr5:72427365 chr5:72427368 synonymous SNV . 0 24 hm5C_associated_SNPs_87232 0 0 1 0 2 TMEM171 chr5:72427365 3'AG 72427365 Downstream 4bp
chr5 72427368 72427368 1 + G A UCEC 72427365 + 72427345 72427385 41 TTCTCTCTCCTTCTCTTTAGCAGGACCCCAACTTCAGAGGG TTCTCTCTCCTTCTCTTTAGCAGAACCCCAACTTCAGAGGG < 41bp 0.776284058077935 0.563281542984155 0.8839545 0.42620248 prediction 0.42600503018756 Functional Loss - TMEM171 ENSG00000157111 CDS Human protein_coding chr5:72427365 chr5:72427368 synonymous SNV . 0 24 hm5C_associated_SNPs_87232 0 0 1 0 2 TMEM171 chr5:72427368 3'AG 72427368 Downstream 1bp
chr17 27062332 27062332 1 + G A LUSC 27062329 + 27062309 27062349 41 TACAACCAGAAGAGTGACATCTGGGCCCTGGGCTGTGTCCT TACAACCAGAAGAGTGACATCTGAGCCCTGGGCTGTGTCCT < 41bp 0.712995372719225 0.464682122281694 0.34322834 0.12121627 prediction 0.425990745438451 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27062329 chr17:27062332 stopgain 1.000 1 24 hm5C_associated_SNPs_87236 0 0 1 0 2 NEK8 chr17:27062258 3'AG 27062258 Downstream 75bp
chr17 27062332 27062332 1 + G A LUSC 27062329 + 27062309 27062349 41 TACAACCAGAAGAGTGACATCTGGGCCCTGGGCTGTGTCCT TACAACCAGAAGAGTGACATCTGAGCCCTGGGCTGTGTCCT < 41bp 0.712995372719225 0.464682122281694 0.34322834 0.12121627 prediction 0.425990745438451 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27062329 chr17:27062332 stopgain 1.000 1 24 hm5C_associated_SNPs_87236 0 0 1 0 2 NEK8 chr17:27062389 5'GT 27062389 Upstream 58bp
chr9 75773670 75773670 1 + C T CESC 75773667 + 75773647 75773687 41 GCGGTGAGCCCCTATCCTACCTTCAATCCATCCTCGGATGT GCGGTGAGCCCCTATCCTACCTTTAATCCATCCTCGGATGT < 41bp 0.712993698613013 0.489647629158836 0.09803593 0.037347496 prediction 0.425987397226027 Functional Loss - ANXA1 ENSG00000135046 CDS Human protein_coding chr9:75773667 chr9:75773670 synonymous SNV . 0 24 hm5C_associated_SNPs_87237 0 0 1 0 2 ANXA1 chr9:75773611 3'AG 75773611 Downstream 60bp
chr9 75773670 75773670 1 + C T CESC 75773667 + 75773647 75773687 41 GCGGTGAGCCCCTATCCTACCTTCAATCCATCCTCGGATGT GCGGTGAGCCCCTATCCTACCTTTAATCCATCCTCGGATGT < 41bp 0.712993698613013 0.489647629158836 0.09803593 0.037347496 prediction 0.425987397226027 Functional Loss - ANXA1 ENSG00000135046 CDS Human protein_coding chr9:75773667 chr9:75773670 synonymous SNV . 0 24 hm5C_associated_SNPs_87237 0 0 1 0 2 ANXA1 chr9:75773719 5'GT 75773719 Upstream 50bp
chr11 65745317 65745317 1 + G A STAD 65745314 + 65745294 65745334 41 AGGAGAAGGACGGCTACAAACCCGACGTTAAGATCGAATAC AGGAGAAGGACGGCTACAAACCCAACGTTAAGATCGAATAC < 41bp 0.797736072932932 0.584742679942248 0.2167401 0.17001656 prediction 0.425986785981367 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65745314 chr11:65745317 nonsynonymous SNV 0.582 1 24 hm5C_associated_SNPs_87238 0 0 1 0 2 SART1 chr11:65745235 3'AG 65745235 Downstream 83bp
chr11 65745317 65745317 1 + G A STAD 65745314 + 65745294 65745334 41 AGGAGAAGGACGGCTACAAACCCGACGTTAAGATCGAATAC AGGAGAAGGACGGCTACAAACCCAACGTTAAGATCGAATAC < 41bp 0.797736072932932 0.584742679942248 0.2167401 0.17001656 prediction 0.425986785981367 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65745314 chr11:65745317 nonsynonymous SNV 0.582 1 24 hm5C_associated_SNPs_87238 0 0 1 0 2 SART1 chr11:65745370 5'GT 65745370 Upstream 54bp
chr6 147525760 147525760 1 + G A HNSC 147525757 + 147525737 147525777 41 GCAACAGCAGCAGCATCCGCCTGGGAACCGGGAGCCGGAGA GCAACAGCAGCAGCATCCGCCTGAGAACCGGGAGCCGGAGA < 41bp 0.758280049735964 0.545290091574246 0.6934557 0.3188522 prediction 0.425979916323436 Functional Loss - STXBP5 ENSG00000164506 CDS Human protein_coding chr6:147525757 chr6:147525760 nonsynonymous SNV 0.989 1 24 hm5C_associated_SNPs_87239 0 0 1 0 1 STXBP5 chr6:147525818 5'GT 147525818 Upstream 59bp
chr3 186302231 186302231 1 + C T UCEC 186302229 + 186302209 186302249 41 GGTTTTCTAGGTACATATTTCCCGGGATAAGATCACCAGGC GGTTTTCTAGGTACATATTTCCTGGGATAAGATCACCAGGC < 41bp 0.712989446391455 0.440308243592784 0.69648015 0.51614505 prediction 0.42597889278291 Functional Loss - DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186302229 chr3:186302231 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_87240 0 0 1 0 1 DNAJB11 chr3:186302219 3'AG 186302219 Downstream 13bp
chr3 23960854 23960854 1 + G A rs373573769 23960851 + 23960831 23960871 41 ACCAAACCAGTCCACAAGCACAGGGAGATGCGTGGGCTGAC ACCAAACCAGTCCACAAGCACAGAGAGATGCGTGGGCTGAC < 41bp 0.783971600491745 0.570983491498643 0.8981054 0.8202193 prediction 0.425976217986204 Functional Loss - RPL15 ENSG00000174748 CDS Human protein_coding chr3:23960851 chr3:23960854 synonymous SNV . 0 24 hm5C_associated_SNPs_87241 0 0 1 0 1 RPL15 chr3:23960841 3'AG 23960841 Downstream 14bp
chr11 22777461 22777461 1 + G A SKCM 22777458 + 22777438 22777478 41 TCTGTGTGGAGCGGCTCTCCCAAGGAAGATACCGAGTGGGA TCTGTGTGGAGCGGCTCTCCCAAAGAAGATACCGAGTGGGA < 41bp 0.794787841277219 0.581800992162283 0.73519266 0.117587805 prediction 0.425973698229872 Functional Loss - GAS2 ENSG00000148935 CDS Human protein_coding chr11:22777458 chr11:22777461 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_87244 0 0 1 0 1 GAS2 chr11:22777392 3'AG 22777392 Downstream 70bp
chr1 10473239 10473239 1 + G T STAD 10473237 + 10473217 10473257 41 GCCAAAGATCAGGGACAGCGCGGGGCAGAAGGGCACAGGGA GCCAAAGATCAGGGACAGCGCGTGGCAGAAGGGCACAGGGA < 41bp 0.911397331704826 0.698416082107207 0.9055965 0.2786687 prediction 0.425962499195238 Functional Loss - PGD ENSG00000142657 CDS Human protein_coding chr1:10473237 chr1:10473239 nonsynonymous SNV 0.885 4 23 hm5C_associated_SNPs_87246 0 0 1 0 1 PGD chr1:10473308 5'GT 10473308 Upstream 70bp
chr15 75641641 75641641 1 + G A UCEC 75641638 + 75641618 75641658 41 CCTTGGGGGAAAGTGGCAGCCGGGCCGCGGGCCCTGTGTCT CCTTGGGGGAAAGTGGCAGCCGGACCGCGGGCCCTGTGTCT < 41bp 0.81098792605709 0.598009616897458 0.592524 0.33623332 prediction 0.425956618319263 Functional Loss - NEIL1 ENSG00000140398 CDS Human protein_coding chr15:75641638 chr15:75641641 nonsynonymous SNV 0.164 0 24 hm5C_associated_SNPs_87248 0 0 1 0 1 NEIL1 chr15:75641680 5'GT 75641680 Upstream 40bp
chr17 38346698 38346698 1 + T C STAD 38346697 + 38346677 38346717 41 CTCCTGCAGAGAAGGTCCTTCTCCAGCCCACTGAGGACTGT CTCCTGCAGAGAAGGTCCTTCCCCAGCCCACTGAGGACTGT < 41bp 0.712977418329026 0.422467200956959 0.91097885 0.15353894 prediction 0.425954836658052 Functional Loss - RAPGEFL1 ENSG00000108352 CDS Human protein_coding chr17:38346697 chr17:38346698 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_87250 0 0 0 0 2 RAPGEFL1 chr17:38346686 3'AG 38346686 Downstream 13bp
chr17 38346698 38346698 1 + T C STAD 38346697 + 38346677 38346717 41 CTCCTGCAGAGAAGGTCCTTCTCCAGCCCACTGAGGACTGT CTCCTGCAGAGAAGGTCCTTCCCCAGCCCACTGAGGACTGT < 41bp 0.712977418329026 0.422467200956959 0.91097885 0.15353894 prediction 0.425954836658052 Functional Loss - RAPGEFL1 ENSG00000108352 CDS Human protein_coding chr17:38346697 chr17:38346698 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_87250 0 0 0 0 2 RAPGEFL1 chr17:38346783 5'GT 38346783 Upstream 86bp
chr10 43609027 43609027 1 + G A COAD 43609024 + 43609004 43609044 41 GGGGCAGCATTGTTGGGGGACACGAGCCTGGGGAGCCCCGG GGGGCAGCATTGTTGGGGGACACAAGCCTGGGGAGCCCCGG < 41bp 0.807322393345985 0.594345982399369 0.86183465 0.8458084 prediction 0.425952821893232 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43609024 chr10:43609027 nonsynonymous SNV 0.009 3 24 hm5C_associated_SNPs_87251 0 0 0 0 1 RET chr10:43609004 3'AG 43609004 Downstream 24bp
chr1 203830805 203830805 1 + G T LUAD 203830803 + 203830783 203830823 41 CCACCATGGCGTACCGTGGCCAGGGTCAGAAAGTGCAGAAG CCACCATGGCGTACCGTGGCCATGGTCAGAAAGTGCAGAAG < 41bp 0.891968844499347 0.678993171073155 0.901548 0.53309095 prediction 0.425951346852384 Functional Loss - SNRPE ENSG00000182004 CDS Human protein_coding chr1:203830803 chr1:203830805 nonsynonymous SNV 0.991 2 23 hm5C_associated_SNPs_87253 0 0 1 2 2 SNRPE chr1:203830841 5'GT 203830841 Upstream 37bp
chr1 203830805 203830805 1 + G T LUAD 203830803 + 203830783 203830823 41 CCACCATGGCGTACCGTGGCCAGGGTCAGAAAGTGCAGAAG CCACCATGGCGTACCGTGGCCATGGTCAGAAAGTGCAGAAG < 41bp 0.891968844499347 0.678993171073155 0.901548 0.53309095 prediction 0.425951346852384 Functional Loss - SNRPE ENSG00000182004 CDS Human protein_coding chr1:203830803 chr1:203830805 nonsynonymous SNV 0.991 2 23 hm5C_associated_SNPs_87253 0 0 1 2 2 SNRPE chr1:203830871 5'GT 203830871 Upstream 67bp
chr7 34118763 34118763 1 + T C STAD 34118762 + 34118742 34118782 41 CGCCACACTTCCACATCGACCTGGATGGCTACCTCTTGAAA CGCCACACTTCCACATCGACCCGGATGGCTACCTCTTGAAA < 41bp 0.82738207732077 0.614407881798784 0.32623577 0.51169485 prediction 0.425948391043972 Functional Loss - BMPER ENSG00000164619 CDS Human protein_coding chr7:34118762 chr7:34118763 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_87255 0 0 0 0 1 BMPER chr7:34118798 5'GT 34118798 Upstream 36bp
chr1 158326581 158326581 1 + T C rs61734681 158326580 + 158326560 158326600 41 CTTTCTCATGGGAGCCAACACTCAGGACACCAAGAATTCAA CTTTCTCATGGGAGCCAACACCCAGGACACCAAGAATTCAA < 41bp 0.72807412478999 0.515102943270152 0.014237165 0.10777804 prediction 0.425942363039676 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158326580 chr1:158326581 synonymous SNV . 0 22 hm5C_associated_SNPs_87257 0 0 0 0 2 CD1E chr1:158326518 3'AG 158326518 Downstream 64bp
chr1 158326581 158326581 1 + T C rs61734681 158326580 + 158326560 158326600 41 CTTTCTCATGGGAGCCAACACTCAGGACACCAAGAATTCAA CTTTCTCATGGGAGCCAACACCCAGGACACCAAGAATTCAA < 41bp 0.72807412478999 0.515102943270152 0.014237165 0.10777804 prediction 0.425942363039676 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158326580 chr1:158326581 synonymous SNV . 0 22 hm5C_associated_SNPs_87257 0 0 0 0 2 CD1E chr1:158326554 3'AG 158326554 Downstream 28bp
chr17 42254255 42254255 1 + C T rs7224330 42254253 + 42254233 42254273 41 GGCGCCGACGTGGGCCTGCGCACCAGCCAGGGCGAGACTGC GGCGCCGACGTGGGCCTGCGCATCAGCCAGGGCGAGACTGC < 41bp 0.844993049422396 0.63202418242248 0.45577934 0.48119244 prediction 0.425937733999831 Functional Loss - ASB16 ENSG00000161664 CDS Human protein_coding chr17:42254253 chr17:42254255 nonsynonymous SNV 0.946 2 23 hm5C_associated_SNPs_87258 0 0 0 0 1 ASB16 chr17:42254308 5'GT 42254308 Upstream 54bp
chr4 71501559 71501559 1 + C T SKCM 71501556 + 71501536 71501576 41 TCTTTCTCTCTAGGCATTCCCACCATTTGGAAATGGGCTAT TCTTTCTCTCTAGGCATTCCCACTATTTGGAAATGGGCTAT < 41bp 0.725408922945527 0.512443153485899 0.106351316 0.11403683 prediction 0.425931538919256 Functional Loss - ENAM ENSG00000132464 CDS Human protein_coding chr4:71501556 chr4:71501559 nonsynonymous SNV 0.402 3 24 hm5C_associated_SNPs_87259 0 0 0 0 2 ENAM chr4:71501549 3'AG 71501549 Downstream 11bp
chr4 71501559 71501559 1 + C T SKCM 71501556 + 71501536 71501576 41 TCTTTCTCTCTAGGCATTCCCACCATTTGGAAATGGGCTAT TCTTTCTCTCTAGGCATTCCCACTATTTGGAAATGGGCTAT < 41bp 0.725408922945527 0.512443153485899 0.106351316 0.11403683 prediction 0.425931538919256 Functional Loss - ENAM ENSG00000132464 CDS Human protein_coding chr4:71501556 chr4:71501559 nonsynonymous SNV 0.402 3 24 hm5C_associated_SNPs_87259 0 0 0 0 2 ENAM chr4:71501611 5'GT 71501611 Upstream 53bp
chr11 2869062 2869062 1 + C T rs139893266 2869060 + 2869040 2869080 41 TTCACCAGCTGCTCTCCTTGCACGGTGGCAGCACCCCCGGC TTCACCAGCTGCTCTCCTTGCATGGTGGCAGCACCCCCGGC < 41bp 0.792649428523165 0.579684900927158 0.7646136 0.8405131 prediction 0.425929055192015 Functional Loss - KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2869060 chr11:2869062 synonymous SNV . 0 23 hm5C_associated_SNPs_87261 3 0 0 0 1 KCNQ1 chr11:2868997 3'AG 2868997 Downstream 66bp
chr15 58840717 58840717 1 + C T UCEC 58840715 + 58840695 58840735 41 CTACCACGTCCGCCAGGAGCCGCGGAGCAAGAGCAAGAGGC CTACCACGTCCGCCAGGAGCCGTGGAGCAAGAGCAAGAGGC < 41bp 0.834332145153686 0.621372455213804 0.82268906 0.3843299 prediction 0.425919379879764 Functional Loss - LIPC ENSG00000166035 CDS Human protein_coding chr15:58840715 chr15:58840717 nonsynonymous SNV 0.005 2 23 hm5C_associated_SNPs_87265 0 0 1 0 1 LIPC chr15:58840771 5'GT 58840771 Upstream 55bp
chr12 58014218 58014218 1 + G A DLBC 58014215 + 58014195 58014235 41 CATCTACAGCTTGCTAGGTACTGGGAGACACCTGTCCACAG CATCTACAGCTTGCTAGGTACTGAGAGACACCTGTCCACAG < 41bp 0.795160754526793 0.58220173777988 0.8160656 0.1315417 prediction 0.425918033493826 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58014215 chr12:58014218 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_87266 0 0 0 0 1 SLC26A10 chr12:58014235 5'GT 58014235 Upstream 18bp
chr4 95377442 95377442 1 + C T rs111792794 95377440 + 95377420 95377460 41 GCTCACCACAACCTCCATCTCCCGAGTTCAAGCGATTCTCC GCTCACCACAACCTCCATCTCCTGAGTTCAAGCGATTCTCC < 41bp 0.712956320605366 0.471860235212224 0.20149511 0.15601677 prediction 0.425912641210732 Functional Loss - PDLIM5 ENSG00000163110 CDS Human protein_coding chr4:95377440 chr4:95377442 synonymous SNV . 0 23 hm5C_associated_SNPs_87267 0 0 0 0 1 PDLIM5 chr4:95377395 3'AG 95377395 Downstream 48bp
chr14 24114366 24114366 1 + G T UCEC 24114362 + 24114342 24114382 41 TCCATCCAGGATTGGGGAGTCAGAGGACTGTGCAGGAATCG TCCATCCAGGATTGGGGAGTCAGATGACTGTGCAGGAATCG < 41bp 0.721538036145122 0.508584344253557 0.90649444 0.89014727 prediction 0.425907383783131 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24114362 chr14:24114366 nonsynonymous SNV 0.869 4 25 hm5C_associated_SNPs_87268 0 0 1 0 1 DHRS2 chr14:24114351 3'AG 24114351 Downstream 16bp
chr7 142566873 142566873 1 + G A SKCM 142566870 + 142566850 142566890 41 GTGAATAGCCACTTGGTGTGCAAGGTGGCCCGTCTTGGCCA GTGAATAGCCACTTGGTGTGCAAAGTGGCCCGTCTTGGCCA < 41bp 0.819561547877225 0.606608243410656 0.8371006 0.20332584 prediction 0.425906608933139 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142566870 chr7:142566873 synonymous SNV . 0 24 hm5C_associated_SNPs_87269 0 0 0 0 1 EPHB6 chr7:142566900 5'GT 142566900 Upstream 28bp
chr6 42146071 42146071 1 + G A SKCM 42146068 + 42146048 42146088 41 GCAGCGCTCAGCTTGGTCCTCAAGGGGAAGGTGGAACAGAA GCAGCGCTCAGCTTGGTCCTCAAAGGGAAGGTGGAACAGAA < 41bp 0.790757945101831 0.577805055763926 0.8985487 0.8815247 prediction 0.42590577867581 Functional Loss - GUCA1A ENSG00000048545 CDS Human protein_coding chr6:42146068 chr6:42146071 synonymous SNV . 0 24 hm5C_associated_SNPs_87270 0 0 0 0 2 GUCA1A chr6:42146018 3'AG 42146018 Downstream 54bp
chr6 42146071 42146071 1 + G A SKCM 42146068 + 42146048 42146088 41 GCAGCGCTCAGCTTGGTCCTCAAGGGGAAGGTGGAACAGAA GCAGCGCTCAGCTTGGTCCTCAAAGGGAAGGTGGAACAGAA < 41bp 0.790757945101831 0.577805055763926 0.8985487 0.8815247 prediction 0.42590577867581 Functional Loss - GUCA1A ENSG00000048545 CDS Human protein_coding chr6:42146068 chr6:42146071 synonymous SNV . 0 24 hm5C_associated_SNPs_87270 0 0 0 0 2 GUCA1A chr6:42146167 5'GT 42146167 Upstream 97bp
chr8 145584371 145584371 1 + G A STAD 145584368 + 145584348 145584388 41 GCACCTCGGCGGGGGTGGTCCTCGTGGTGAGCACAGGGGGA GCACCTCGGCGGGGGTGGTCCTCATGGTGAGCACAGGGGGA < 41bp 0.806039415462469 0.593087677389351 0.5264374 0.38903606 prediction 0.425903476146235 Functional Loss - SLC52A2 ENSG00000185803 CDS Human protein_coding chr8:145584368 chr8:145584371 nonsynonymous SNV 0.951 2 24 hm5C_associated_SNPs_87271 0 0 0 0 1 SLC52A2 chr8:145584373 5'GT 145584373 Upstream 3bp
chr1 111773557 111773557 1 + C T rs146994563 111773555 + 111773535 111773575 41 TCTACCAGACCATCAACAGTCTCAAAACCAAGTGAGTAAGA TCTACCAGACCATCAACAGTCTTAAAACCAAGTGAGTAAGA < 41bp 0.712947587657902 0.423811754360229 0.20885825 0.22094786 prediction 0.425895175315804 Functional Loss - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111773555 chr1:111773557 synonymous SNV . 0 23 hm5C_associated_SNPs_87274 0 0 0 0 1 CHI3L2 chr1:111773565 5'GT 111773565 Upstream 9bp
chr11 126201400 126201400 1 + G T LUAD 126201397 + 126201377 126201417 41 CGAGAGACGGGAGATGACTACAGGAATATTACTTTACCCCA CGAGAGACGGGAGATGACTACAGTAATATTACTTTACCCCA < 41bp 0.936491501328871 0.723545436688254 0.82548785 0.3412308 prediction 0.425892129281234 Functional Loss - DCPS ENSG00000110063 CDS Human protein_coding chr11:126201397 chr11:126201400 nonsynonymous SNV 0.369 0 24 hm5C_associated_SNPs_87275 0 0 1 0 1 DCPS chr11:126201445 5'GT 126201445 Upstream 46bp
chr16 57503165 57503165 1 + C T STAD 57503163 + 57503143 57503183 41 GAAGACCAGACGCGACATGTCACGTCTCGAGACCTCATCTC GAAGACCAGACGCGACATGTCATGTCTCGAGACCTCATCTC < 41bp 0.852603861469151 0.639663129877989 0.007029116 0.012010485 prediction 0.425881463182324 Functional Loss - POLR2C ENSG00000102978 CDS Human protein_coding chr16:57503163 chr16:57503165 nonsynonymous SNV 0.283 4 23 hm5C_associated_SNPs_87281 0 0 1 0 2 POLR2C chr16:57503077 3'AG 57503077 Downstream 89bp
chr16 57503165 57503165 1 + C T STAD 57503163 + 57503143 57503183 41 GAAGACCAGACGCGACATGTCACGTCTCGAGACCTCATCTC GAAGACCAGACGCGACATGTCATGTCTCGAGACCTCATCTC < 41bp 0.852603861469151 0.639663129877989 0.007029116 0.012010485 prediction 0.425881463182324 Functional Loss - POLR2C ENSG00000102978 CDS Human protein_coding chr16:57503163 chr16:57503165 nonsynonymous SNV 0.283 4 23 hm5C_associated_SNPs_87281 0 0 1 0 2 POLR2C chr16:57503205 5'GT 57503205 Upstream 41bp
chr1 75622741 75622741 1 + C T ESCA 75622738 + 75622718 75622758 41 CCAAGATGGAACGATGTTAACTGCGCTGCATAGTTATATGG CCAAGATGGAACGATGTTAACTGTGCTGCATAGTTATATGG < 41bp 0.712940362818182 0.495898636886259 0.123125374 0.13297325 prediction 0.425880725636364 Functional Loss - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75622738 chr1:75622741 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_87282 0 0 1 0 1 LHX8 chr1:75622761 5'GT 75622761 Upstream 21bp
chr3 134644715 134644715 1 + C T BRCA 134644712 + 134644692 134644732 41 GCTGGGCTGGACGGCCAATCCTGCGTCCGGGGTGAGTATCA GCTGGGCTGGACGGCCAATCCTGTGTCCGGGGTGAGTATCA < 41bp 0.729874697101382 0.516938624511827 0.29455915 0.15132287 prediction 0.425872145179111 Functional Loss - EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134644712 chr3:134644715 nonsynonymous SNV 0.911 0 24 hm5C_associated_SNPs_87283 0 0 0 0 2 EPHB1 chr3:134644658 3'AG 134644658 Downstream 58bp
chr3 134644715 134644715 1 + C T BRCA 134644712 + 134644692 134644732 41 GCTGGGCTGGACGGCCAATCCTGCGTCCGGGGTGAGTATCA GCTGGGCTGGACGGCCAATCCTGTGTCCGGGGTGAGTATCA < 41bp 0.729874697101382 0.516938624511827 0.29455915 0.15132287 prediction 0.425872145179111 Functional Loss - EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134644712 chr3:134644715 nonsynonymous SNV 0.911 0 24 hm5C_associated_SNPs_87283 0 0 0 0 2 EPHB1 chr3:134644722 5'GT 134644722 Upstream 8bp
chr2 102849490 102849490 1 + G A SKCM 102849487 + 102849467 102849507 41 AAGGAAAGCCAGAGGCATGCCGTGGATGCCCTGGTGTTGAA AAGGAAAGCCAGAGGCATGCCGTAGATGCCCTGGTGTTGAA < 41bp 0.803114312485305 0.590181830639459 0.44979042 0.34183306 prediction 0.425864963691692 Functional Loss - IL1RL2 ENSG00000115598 CDS Human protein_coding chr2:102849487 chr2:102849490 synonymous SNV . 0 24 hm5C_associated_SNPs_87284 0 0 0 0 2 IL1RL2 chr2:102849423 3'AG 102849423 Downstream 68bp
chr2 102849490 102849490 1 + G A SKCM 102849487 + 102849467 102849507 41 AAGGAAAGCCAGAGGCATGCCGTGGATGCCCTGGTGTTGAA AAGGAAAGCCAGAGGCATGCCGTAGATGCCCTGGTGTTGAA < 41bp 0.803114312485305 0.590181830639459 0.44979042 0.34183306 prediction 0.425864963691692 Functional Loss - IL1RL2 ENSG00000115598 CDS Human protein_coding chr2:102849487 chr2:102849490 synonymous SNV . 0 24 hm5C_associated_SNPs_87284 0 0 0 0 2 IL1RL2 chr2:102849584 5'GT 102849584 Upstream 95bp
chr19 35837096 35837096 1 + C T rs79438722 35837093 + 35837073 35837113 41 ATGCAGAGACCTCCCCCGGACTGCGATGACACGGTCACTTA ATGCAGAGACCTCCCCCGGACTGTGATGACACGGTCACTTA < 41bp 0.712930706479212 0.486977932704574 0.07810795 0.10684973 prediction 0.425861412958423 Functional Loss - CD22 ENSG00000012124 CDS Human protein_coding chr19:35837093 chr19:35837096 stopgain 0.000 0 24 hm5C_associated_SNPs_87286 0 0 0 0 2 CD22 chr19:35837054 3'AG 35837054 Downstream 43bp
chr19 35837096 35837096 1 + C T rs79438722 35837093 + 35837073 35837113 41 ATGCAGAGACCTCCCCCGGACTGCGATGACACGGTCACTTA ATGCAGAGACCTCCCCCGGACTGTGATGACACGGTCACTTA < 41bp 0.712930706479212 0.486977932704574 0.07810795 0.10684973 prediction 0.425861412958423 Functional Loss - CD22 ENSG00000012124 CDS Human protein_coding chr19:35837093 chr19:35837096 stopgain 0.000 0 24 hm5C_associated_SNPs_87286 0 0 0 0 2 CD22 chr19:35837138 5'GT 35837138 Upstream 43bp
chr1 46032603 46032603 1 + G A SKCM 46032600 + 46032580 46032620 41 TGGAACACCAAGCACCACCCCGAGGATGTGGAGCCTGCCCT TGGAACACCAAGCACCACCCCGAAGATGTGGAGCCTGCCCT < 41bp 0.805887132451121 0.59295647760818 0.48784956 0.18096495 prediction 0.425861309685882 Functional Loss - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46032600 chr1:46032603 synonymous SNV . 0 24 hm5C_associated_SNPs_87287 0 0 1 0 2 AKR1A1 chr1:46032541 3'AG 46032541 Downstream 63bp
chr1 46032603 46032603 1 + G A SKCM 46032600 + 46032580 46032620 41 TGGAACACCAAGCACCACCCCGAGGATGTGGAGCCTGCCCT TGGAACACCAAGCACCACCCCGAAGATGTGGAGCCTGCCCT < 41bp 0.805887132451121 0.59295647760818 0.48784956 0.18096495 prediction 0.425861309685882 Functional Loss - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46032600 chr1:46032603 synonymous SNV . 0 24 hm5C_associated_SNPs_87287 0 0 1 0 2 AKR1A1 chr1:46032692 5'GT 46032692 Upstream 90bp
chr1 247607322 247607322 1 + G A UCEC 247607319 + 247607299 247607339 41 GTCTGTTGTTCAGCTTTGTCCTCGGTACTCAGCACTAATCA GTCTGTTGTTCAGCTTTGTCCTCAGTACTCAGCACTAATCA < 41bp 0.712930462976154 0.462354673867289 0.49370655 0.20730665 prediction 0.425860925952309 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247607319 chr1:247607322 synonymous SNV . 0 24 hm5C_associated_SNPs_87288 0 0 0 0 1 NLRP3 chr1:247607274 3'AG 247607274 Downstream 49bp
chr1 212254045 212254045 1 + C T ESCA 212254042 + 212254022 212254062 41 ACCAGGAGGTGATAAACTTTCCACGGTGGGTTGGGCCTCTC ACCAGGAGGTGATAAACTTTCCATGGTGGGTTGGGCCTCTC < 41bp 0.712928865384042 0.48966189718865 0.64391637 0.64199585 prediction 0.425857730768084 Functional Loss - DTL ENSG00000143476 CDS Human protein_coding chr1:212254042 chr1:212254045 nonsynonymous SNV 0.981 0 24 hm5C_associated_SNPs_87289 0 0 1 0 2 DTL chr1:212253957 3'AG 212253957 Downstream 89bp
chr1 212254045 212254045 1 + C T ESCA 212254042 + 212254022 212254062 41 ACCAGGAGGTGATAAACTTTCCACGGTGGGTTGGGCCTCTC ACCAGGAGGTGATAAACTTTCCATGGTGGGTTGGGCCTCTC < 41bp 0.712928865384042 0.48966189718865 0.64391637 0.64199585 prediction 0.425857730768084 Functional Loss - DTL ENSG00000143476 CDS Human protein_coding chr1:212254042 chr1:212254045 nonsynonymous SNV 0.981 0 24 hm5C_associated_SNPs_87289 0 0 1 0 2 DTL chr1:212254092 5'GT 212254092 Upstream 48bp
chr2 208576668 208576668 1 + G A COAD 208576665 + 208576645 208576685 41 GTGTCCCCCAATGCCAGCCCCAAGCTGGGCCGGCGCGCGGG GTGTCCCCCAATGCCAGCCCCAAACTGGGCCGGCGCGCGGG < 41bp 0.712924477074888 0.456626365023129 0.15250549 0.1333156 prediction 0.425848954149775 Functional Loss - CCNYL1 ENSG00000163249 CDS Human protein_coding chr2:208576665 chr2:208576668 synonymous SNV . 0 24 hm5C_associated_SNPs_87290 0 0 1 0 1 CCNYL1 chr2:208576662 3'AG 208576662 Downstream 7bp
chr13 20208066 20208066 1 + G C BLCA 20208065 + 20208045 20208085 41 GAGGACGGAGAGGATGTGTTCGAGGTGGAGAAGATCCTGGA GAGGACGGAGAGGATGTGTTCCAGGTGGAGAAGATCCTGGA < 41bp 0.887047847959066 0.674126248853853 0.91299963 0.8788238 prediction 0.425843198210425 Functional Loss - MPHOSPH8 ENSG00000196199 CDS Human protein_coding chr13:20208065 chr13:20208066 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_87292 0 0 1 0 1 MPHOSPH8 chr13:20208101 5'GT 20208101 Upstream 36bp
chr3 186394924 186394924 1 + C T SKCM 186394921 + 186394901 186394941 41 GCGTTCTTCTACCACCAAGCCTCCATTCAAGCCCCATGGAT GCGTTCTTCTACCACCAAGCCTCTATTCAAGCCCCATGGAT < 41bp 0.737831709605857 0.524911181867384 0.9604152 0.8855637 prediction 0.425841055476946 Functional Loss - HRG ENSG00000113905 CDS Human protein_coding chr3:186394921 chr3:186394924 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_87293 0 0 0 0 1 HRG chr3:186394836 3'AG 186394836 Downstream 89bp
chr4 113333091 113333091 1 + C T OV 113333088 + 113333068 113333108 41 TCGACGTCTCTGGAAAACTTCTGCAGGTCGCCAAAGGTCTC TCGACGTCTCTGGAAAACTTCTGTAGGTCGCCAAAGGTCTC < 41bp 0.739797416558396 0.52687896080541 0.34669852 0.26743925 prediction 0.425836911505972 Functional Loss - ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113333088 chr4:113333091 stopgain 0.786 1 24 hm5C_associated_SNPs_87295 0 0 0 2 1 ALPK1 chr4:113333181 5'GT 113333181 Upstream 91bp
chr2 110036027 110036027 1 + G A COAD 110036024 + 110036004 110036044 41 TCCTCGGCGGGATCTACCCCCACGGCTGTCCCACGGGCTGC TCCTCGGCGGGATCTACCCCCACAGCTGTCCCACGGGCTGC < 41bp 0.712917084226648 0.46918158816418 0.50630724 0.22476086 prediction 0.425834168453296 Functional Loss - SH3RF3 ENSG00000172985 CDS Human protein_coding chr2:110036024 chr2:110036027 synonymous SNV . 0 24 hm5C_associated_SNPs_87296 0 0 0 0 2 SH3RF3 chr2:110035995 3'AG 110035995 Downstream 33bp
chr2 110036027 110036027 1 + G A COAD 110036024 + 110036004 110036044 41 TCCTCGGCGGGATCTACCCCCACGGCTGTCCCACGGGCTGC TCCTCGGCGGGATCTACCCCCACAGCTGTCCCACGGGCTGC < 41bp 0.712917084226648 0.46918158816418 0.50630724 0.22476086 prediction 0.425834168453296 Functional Loss - SH3RF3 ENSG00000172985 CDS Human protein_coding chr2:110036024 chr2:110036027 synonymous SNV . 0 24 hm5C_associated_SNPs_87296 0 0 0 0 2 SH3RF3 chr2:110036098 5'GT 110036098 Upstream 72bp
chr2 27150132 27150132 1 + A C COAD 27150128 + 27150108 27150148 41 ACTTGTTCTCCAGGTGAAAGCAGAAATGGAGACACTGGTGA ACTTGTTCTCCAGGTGAAAGCAGACATGGAGACACTGGTGA < 41bp 0.712914880570636 0.301205732404766 0.33361718 0.33625132 prediction 0.425829761141273 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27150128 chr2:27150132 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_87298 0 0 1 0 1 DPYSL5 chr2:27150121 3'AG 27150121 Downstream 12bp
chr2 173352513 173352513 1 + G A SKCM 173352510 + 173352490 173352530 41 TCACCTTTGACACCCCAGATCTGGATATTAATCTGAAGTTA TCACCTTTGACACCCCAGATCTGAATATTAATCTGAAGTTA < 41bp 0.712913716313682 0.47477414784724 0.2990545 0.22014186 prediction 0.425827432627363 Functional Loss - ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173352510 chr2:173352513 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_87299 0 0 0 0 2 ITGA6 chr2:173352456 3'AG 173352456 Downstream 58bp
chr2 173352513 173352513 1 + G A SKCM 173352510 + 173352490 173352530 41 TCACCTTTGACACCCCAGATCTGGATATTAATCTGAAGTTA TCACCTTTGACACCCCAGATCTGAATATTAATCTGAAGTTA < 41bp 0.712913716313682 0.47477414784724 0.2990545 0.22014186 prediction 0.425827432627363 Functional Loss - ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173352510 chr2:173352513 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_87299 0 0 0 0 2 ITGA6 chr2:173352535 5'GT 173352535 Upstream 23bp
chr16 84801856 84801856 1 + G A LIHC 84801853 + 84801833 84801873 41 GCCACTTTGCAGCCATTTTTCACGTTGCAGTTGGATATCCA GCCACTTTGCAGCCATTTTTCACATTGCAGTTGGATATCCA < 41bp 0.783414680053559 0.570504294668087 0.2982278 0.15880907 prediction 0.425820770770943 Functional Loss - USP10 ENSG00000103194 CDS Human protein_coding chr16:84801853 chr16:84801856 nonsynonymous SNV 0.920 0 24 hm5C_associated_SNPs_87301 0 0 1 0 1 USP10 chr16:84801799 3'AG 84801799 Downstream 58bp
chr9 72501792 72501792 1 + C T COAD 72501789 + 72501769 72501809 41 GTACTCAGAAGATTATGTTCCACCATATGATTATCAGCCAC GTACTCAGAAGATTATGTTCCACTATATGATTATCAGCCAC < 41bp 0.734154724674841 0.521247087324009 0.0786683 0.111217886 prediction 0.425815274701664 Functional Loss - C9orf135 ENSG00000204711 CDS Human protein_coding chr9:72501789 chr9:72501792 nonsynonymous SNV 0.037 1 24 hm5C_associated_SNPs_87302 0 0 0 0 2 C9orf135 chr9:72501754 3'AG 72501754 Downstream 39bp
chr9 72501792 72501792 1 + C T COAD 72501789 + 72501769 72501809 41 GTACTCAGAAGATTATGTTCCACCATATGATTATCAGCCAC GTACTCAGAAGATTATGTTCCACTATATGATTATCAGCCAC < 41bp 0.734154724674841 0.521247087324009 0.0786683 0.111217886 prediction 0.425815274701664 Functional Loss - C9orf135 ENSG00000204711 CDS Human protein_coding chr9:72501789 chr9:72501792 nonsynonymous SNV 0.037 1 24 hm5C_associated_SNPs_87302 0 0 0 0 2 C9orf135 chr9:72501811 5'GT 72501811 Upstream 20bp
chr1 243480080 243480080 1 + C T BLCA 243480077 + 243480057 243480097 41 AGAAAGAGATGACTTGATGTCTGCACTAGTTTCCGTAAGGA AGAAAGAGATGACTTGATGTCTGTACTAGTTTCCGTAAGGA < 41bp 0.712905693738486 0.480196878301108 0.11911425 0.17224476 prediction 0.425811387476973 Functional Loss - SDCCAG8 ENSG00000054282 CDS Human protein_coding chr1:243480077 chr1:243480080 nonsynonymous SNV 0.252 0 24 hm5C_associated_SNPs_87303 0 0 1 0 1 SDCCAG8 chr1:243480057 3'AG 243480057 Downstream 24bp
chr12 98989530 98989530 1 + G A READ 98989527 + 98989507 98989547 41 TACAGTTGTGAATTTGGCTCCGCGAAGTATTATGCACTGTG TACAGTTGTGAATTTGGCTCCGCAAAGTATTATGCACTGTG < 41bp 0.712902355736001 0.484285285885175 0.10292721 0.22091827 prediction 0.425804711472001 Functional Loss - SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98989527 chr12:98989530 synonymous SNV . 0 24 hm5C_associated_SNPs_87306 0 0 1 0 2 SLC25A3 chr12:98989505 3'AG 98989505 Downstream 26bp
chr12 98989530 98989530 1 + G A READ 98989527 + 98989507 98989547 41 TACAGTTGTGAATTTGGCTCCGCGAAGTATTATGCACTGTG TACAGTTGTGAATTTGGCTCCGCAAAGTATTATGCACTGTG < 41bp 0.712902355736001 0.484285285885175 0.10292721 0.22091827 prediction 0.425804711472001 Functional Loss - SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98989527 chr12:98989530 synonymous SNV . 0 24 hm5C_associated_SNPs_87306 0 0 1 0 2 SLC25A3 chr12:98989626 5'GT 98989626 Upstream 97bp
chr10 129868019 129868019 1 + G A UCEC 129868016 + 129867996 129868036 41 GCCATGATGGCCATGATGCACGCGGAGCAGAAGGTGGATGT GCCATGATGGCCATGATGCACGCAGAGCAGAAGGTGGATGT < 41bp 0.789605165646473 0.576704922511495 0.39156199 0.1504415 prediction 0.425800486269957 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129868016 chr10:129868019 synonymous SNV . 0 24 hm5C_associated_SNPs_87309 0 0 0 0 2 PTPRE chr10:129867956 3'AG 129867956 Downstream 64bp
chr10 129868019 129868019 1 + G A UCEC 129868016 + 129867996 129868036 41 GCCATGATGGCCATGATGCACGCGGAGCAGAAGGTGGATGT GCCATGATGGCCATGATGCACGCAGAGCAGAAGGTGGATGT < 41bp 0.789605165646473 0.576704922511495 0.39156199 0.1504415 prediction 0.425800486269957 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129868016 chr10:129868019 synonymous SNV . 0 24 hm5C_associated_SNPs_87309 0 0 0 0 2 PTPRE chr10:129868091 5'GT 129868091 Upstream 73bp
chr7 92938236 92938236 1 + G A GBM 92938233 + 92938213 92938253 41 AGACTATGTGGATGAGCAGACAGGAGATGGTCCTGTGAAAA AGACTATGTGGATGAGCAGACAGAAGATGGTCCTGTGAAAA < 41bp 0.750451224968094 0.537556594701702 0.8755804 0.5626792 prediction 0.425789260532785 Functional Loss - VPS50 ENSG00000004766 CDS Human protein_coding chr7:92938233 chr7:92938236 nonsynonymous SNV 0.578 3 24 hm5C_associated_SNPs_87311 0 0 1 0 1 VPS50 chr7:92938254 5'GT 92938254 Upstream 19bp
chr8 86354322 86354322 1 + C T SKCM 86354319 + 86354299 86354339 41 CAGTGCTGAGAGGGGGTCCTCTCCCTGGACCCTACCGACTT CAGTGCTGAGAGGGGGTCCTCTCTCTGGACCCTACCGACTT < 41bp 0.712894289900561 0.491314452417695 0.32307214 0.078101635 prediction 0.425788579801122 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86354319 chr8:86354322 nonsynonymous SNV 0.971 0 24 hm5C_associated_SNPs_87312 0 0 0 0 3 CA3 chr8:86354302 3'AG 86354302 Downstream 21bp
chr8 86354322 86354322 1 + C T SKCM 86354319 + 86354299 86354339 41 CAGTGCTGAGAGGGGGTCCTCTCCCTGGACCCTACCGACTT CAGTGCTGAGAGGGGGTCCTCTCTCTGGACCCTACCGACTT < 41bp 0.712894289900561 0.491314452417695 0.32307214 0.078101635 prediction 0.425788579801122 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86354319 chr8:86354322 nonsynonymous SNV 0.971 0 24 hm5C_associated_SNPs_87312 0 0 0 0 3 CA3 chr8:86354344 5'GT 86354344 Upstream 23bp
chr8 86354322 86354322 1 + C T SKCM 86354319 + 86354299 86354339 41 CAGTGCTGAGAGGGGGTCCTCTCCCTGGACCCTACCGACTT CAGTGCTGAGAGGGGGTCCTCTCTCTGGACCCTACCGACTT < 41bp 0.712894289900561 0.491314452417695 0.32307214 0.078101635 prediction 0.425788579801122 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86354319 chr8:86354322 nonsynonymous SNV 0.971 0 24 hm5C_associated_SNPs_87312 0 0 0 0 3 CA3 chr8:86354420 5'GT 86354420 Upstream 99bp
chr11 12242003 12242003 1 + G A BLCA 12242000 + 12241980 12242020 41 CCCTTGTGGGTGACAGCTTGCTTGAGGTACTGCCTGAGCTC CCCTTGTGGGTGACAGCTTGCTTAAGGTACTGCCTGAGCTC < 41bp 0.712891531837702 0.466689112620737 0.1800851 0.073782265 prediction 0.425783063675404 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12242000 chr11:12242003 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_87313 0 0 0 0 1 MICAL2 chr11:12242005 5'GT 12242005 Upstream 3bp
chr12 56360905 56360905 1 + A T LAML 56360901 + 56360881 56360921 41 TGGCGCTTAAGAAAATCCGCCTGGACACGTGAGTGGCCTCT TGGCGCTTAAGAAAATCCGCCTGGTCACGTGAGTGGCCTCT < 41bp 0.712890272665843 0.383307596884278 0.7070327 0.25034195 prediction 0.425780545331685 Functional Loss - CDK2 ENSG00000123374 CDS Human protein_coding chr12:56360901 chr12:56360905 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_87314 0 0 1 0 1 CDK2 chr12:56360908 5'GT 56360908 Upstream 4bp
chr7 98988690 98988690 1 + C T HNSC 98988687 + 98988667 98988707 41 GCCTGGGTAAGCCACGACAGCACCGTCTGCCTGGCTGATGC GCCTGGGTAAGCCACGACAGCACTGTCTGCCTGGCTGATGC < 41bp 0.738909804808388 0.526021359187752 0.03123027 0.029875636 prediction 0.425776891241273 Functional Loss - ARPC1B ENSG00000130429 CDS Human protein_coding chr7:98988687 chr7:98988690 synonymous SNV . 0 24 hm5C_associated_SNPs_87316 0 0 1 0 1 ARPC1B chr7:98988722 5'GT 98988722 Upstream 33bp
chr15 42107533 42107533 1 + C T SKCM 42107531 + 42107511 42107551 41 ATTACCTGCTCCTCAGACAACACCATCCGCCTGTGGAACAC ATTACCTGCTCCTCAGACAACATCATCCGCCTGTGGAACAC < 41bp 0.712884653459143 0.460795963679179 0.0480572 0.044604212 prediction 0.425769306918287 Functional Loss - MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42107531 chr15:42107533 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_87318 0 0 1 0 1 MAPKBP1 chr15:42107457 3'AG 42107457 Downstream 77bp
chr7 30651737 30651737 1 + G A UCEC 30651734 + 30651714 30651754 41 ACTTGAGACCAGAAACTGCACAGGGGATTTTCTTGAATTTC ACTTGAGACCAGAAACTGCACAGAGGATTTTCTTGAATTTC < 41bp 0.712883332032604 0.482636733945212 0.77662575 0.34189856 prediction 0.425766664065208 Functional Loss - GARS ENSG00000106105 CDS Human protein_coding chr7:30651734 chr7:30651737 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_87319 0 0 1 0 1 GARS chr7:30651712 3'AG 30651712 Downstream 26bp
chr3 179082121 179082121 1 + G T ESCA 179082118 + 179082098 179082138 41 GTCACTACAGAGCTGGATAGCTGGATTGATAAGTTTTGCCT GTCACTACAGAGCTGGATAGCTGTATTGATAAGTTTTGCCT < 41bp 0.926515158533886 0.713633021236197 0.80896556 0.16434473 prediction 0.425764274595378 Functional Loss - MFN1 ENSG00000171109 CDS Human protein_coding chr3:179082118 chr3:179082121 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_87321 0 0 1 0 2 MFN1 chr3:179082085 3'AG 179082085 Downstream 37bp
chr3 179082121 179082121 1 + G T ESCA 179082118 + 179082098 179082138 41 GTCACTACAGAGCTGGATAGCTGGATTGATAAGTTTTGCCT GTCACTACAGAGCTGGATAGCTGTATTGATAAGTTTTGCCT < 41bp 0.926515158533886 0.713633021236197 0.80896556 0.16434473 prediction 0.425764274595378 Functional Loss - MFN1 ENSG00000171109 CDS Human protein_coding chr3:179082118 chr3:179082121 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_87321 0 0 1 0 2 MFN1 chr3:179082193 5'GT 179082193 Upstream 73bp
chr12 113321169 113321169 1 + C T COAD 113321167 + 113321147 113321187 41 GGAATGAGACCCTCGTGTATCACGGCATCACCGATGAGGAC GGAATGAGACCCTCGTGTATCATGGCATCACCGATGAGGAC < 41bp 0.712882107917671 0.435776421977162 0.89370716 0.89298064 prediction 0.425764215835342 Functional Loss - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113321167 chr12:113321169 synonymous SNV . 0 23 hm5C_associated_SNPs_87322 0 0 0 0 2 RPH3A chr12:113321098 3'AG 113321098 Downstream 72bp
chr12 113321169 113321169 1 + C T COAD 113321167 + 113321147 113321187 41 GGAATGAGACCCTCGTGTATCACGGCATCACCGATGAGGAC GGAATGAGACCCTCGTGTATCATGGCATCACCGATGAGGAC < 41bp 0.712882107917671 0.435776421977162 0.89370716 0.89298064 prediction 0.425764215835342 Functional Loss - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113321167 chr12:113321169 synonymous SNV . 0 23 hm5C_associated_SNPs_87322 0 0 0 0 2 RPH3A chr12:113321207 5'GT 113321207 Upstream 39bp
chr16 24895396 24895396 1 + C T CESC 24895394 + 24895374 24895414 41 GGCCTGGCTGCTGTGATCTACACGGATGCCCTGCAGACGCT GGCCTGGCTGCTGTGATCTACATGGATGCCCTGCAGACGCT < 41bp 0.849940878506468 0.63706409334442 0.72992325 0.5402171 prediction 0.425753570324098 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24895394 chr16:24895396 nonsynonymous SNV 0.978 5 23 hm5C_associated_SNPs_87325 0 0 0 0 2 SLC5A11 chr16:24895372 3'AG 24895372 Downstream 25bp
chr16 24895396 24895396 1 + C T CESC 24895394 + 24895374 24895414 41 GGCCTGGCTGCTGTGATCTACACGGATGCCCTGCAGACGCT GGCCTGGCTGCTGTGATCTACATGGATGCCCTGCAGACGCT < 41bp 0.849940878506468 0.63706409334442 0.72992325 0.5402171 prediction 0.425753570324098 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24895394 chr16:24895396 nonsynonymous SNV 0.978 5 23 hm5C_associated_SNPs_87325 0 0 0 0 2 SLC5A11 chr16:24895452 5'GT 24895452 Upstream 57bp
chrX 48624329 48624329 1 + C T UCEC 48624326 + 48624306 48624346 41 ACGGTGAAGAGCATCAAAGACACCACCATGTTTTATTCCAA ACGGTGAAGAGCATCAAAGACACTACCATGTTTTATTCCAA < 41bp 0.712874469165537 0.489383088635921 0.013281018 0.035722613 prediction 0.425748938331075 Functional Loss - GLOD5 ENSG00000171433 CDS Human protein_coding chrX:48624326 chrX:48624329 synonymous SNV . 0 24 hm5C_associated_SNPs_87328 0 0 0 0 2 GLOD5 chrX:48624240 3'AG 48624240 Downstream 90bp
chrX 48624329 48624329 1 + C T UCEC 48624326 + 48624306 48624346 41 ACGGTGAAGAGCATCAAAGACACCACCATGTTTTATTCCAA ACGGTGAAGAGCATCAAAGACACTACCATGTTTTATTCCAA < 41bp 0.712874469165537 0.489383088635921 0.013281018 0.035722613 prediction 0.425748938331075 Functional Loss - GLOD5 ENSG00000171433 CDS Human protein_coding chrX:48624326 chrX:48624329 synonymous SNV . 0 24 hm5C_associated_SNPs_87328 0 0 0 0 2 GLOD5 chrX:48624377 5'GT 48624377 Upstream 49bp
chrX 48624328 48624328 1 + C T UCEC 48624326 + 48624306 48624346 41 ACGGTGAAGAGCATCAAAGACACCACCATGTTTTATTCCAA ACGGTGAAGAGCATCAAAGACATCACCATGTTTTATTCCAA < 41bp 0.712874469165537 0.422858472738088 0.013281018 0.02411446 prediction 0.425748938331075 Functional Loss - GLOD5 ENSG00000171433 CDS Human protein_coding chrX:48624326 chrX:48624328 nonsynonymous SNV 0.871 4 23 hm5C_associated_SNPs_87329 0 0 0 0 2 GLOD5 chrX:48624240 3'AG 48624240 Downstream 89bp
chrX 48624328 48624328 1 + C T UCEC 48624326 + 48624306 48624346 41 ACGGTGAAGAGCATCAAAGACACCACCATGTTTTATTCCAA ACGGTGAAGAGCATCAAAGACATCACCATGTTTTATTCCAA < 41bp 0.712874469165537 0.422858472738088 0.013281018 0.02411446 prediction 0.425748938331075 Functional Loss - GLOD5 ENSG00000171433 CDS Human protein_coding chrX:48624326 chrX:48624328 nonsynonymous SNV 0.871 4 23 hm5C_associated_SNPs_87329 0 0 0 0 2 GLOD5 chrX:48624377 5'GT 48624377 Upstream 50bp
chr22 29885594 29885594 1 + A T READ 29885592 + 29885572 29885612 41 CCCCTGAGAAGGCCAAGTCCCCAGAGAAGGAAGAGGCCAAG CCCCTGAGAAGGCCAAGTCCCCTGAGAAGGAAGAGGCCAAG < 41bp 0.712868378497028 0.499991700424278 0.35720164 0.101629704 prediction 0.425736756994057 Functional Loss - NEFH ENSG00000100285 CDS Human protein_coding chr22:29885592 chr22:29885594 synonymous SNV . 0 23 hm5C_associated_SNPs_87333 0 0 1 0 1 NEFH chr22:29885571 3'AG 29885571 Downstream 24bp
chrX 51640976 51640976 1 + T C LGG 51640975 + 51640955 51640995 41 CCGAGTCCCTGGCTGGCATACTGGGAACGTAAGATGGGAAA CCGAGTCCCTGGCTGGCATACCGGGAACGTAAGATGGGAAA < 41bp 0.817506861014129 0.604648163865552 0.75030506 0.88692844 prediction 0.425717394297154 Functional Loss - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51640975 chrX:51640976 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_87338 0 0 1 0 2 MAGED1 chrX:51640891 3'AG 51640891 Downstream 86bp
chrX 51640976 51640976 1 + T C LGG 51640975 + 51640955 51640995 41 CCGAGTCCCTGGCTGGCATACTGGGAACGTAAGATGGGAAA CCGAGTCCCTGGCTGGCATACCGGGAACGTAAGATGGGAAA < 41bp 0.817506861014129 0.604648163865552 0.75030506 0.88692844 prediction 0.425717394297154 Functional Loss - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51640975 chrX:51640976 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_87338 0 0 1 0 2 MAGED1 chrX:51640982 5'GT 51640982 Upstream 7bp
chr10 20436754 20436754 1 + G A SKCM 20436751 + 20436731 20436771 41 AGTGGGACCATGTACATCTCCAGGATAATTATAACCTGGGA AGTGGGACCATGTACATCTCCAGAATAATTATAACCTGGGA < 41bp 0.768884847432766 0.55602914149494 0.50192857 0.29682595 prediction 0.425711411875651 Functional Loss - PLXDC2 ENSG00000120594 CDS Human protein_coding chr10:20436751 chr10:20436754 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_87340 0 0 1 2 2 PLXDC2 chr10:20436713 3'AG 20436713 Downstream 42bp
chr10 20436754 20436754 1 + G A SKCM 20436751 + 20436731 20436771 41 AGTGGGACCATGTACATCTCCAGGATAATTATAACCTGGGA AGTGGGACCATGTACATCTCCAGAATAATTATAACCTGGGA < 41bp 0.768884847432766 0.55602914149494 0.50192857 0.29682595 prediction 0.425711411875651 Functional Loss - PLXDC2 ENSG00000120594 CDS Human protein_coding chr10:20436751 chr10:20436754 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_87340 0 0 1 2 2 PLXDC2 chr10:20436831 5'GT 20436831 Upstream 78bp
chr1 29650006 29650006 1 + C T COAD 29650004 + 29649984 29650024 41 CTTCCGGGTGCAGAACATCTCTCGGGTGAGTGGTCTGAGGA CTTCCGGGTGCAGAACATCTCTTGGGTGAGTGGTCTGAGGA < 41bp 0.843869756941179 0.631016690705306 0.87936383 0.5319132 prediction 0.425706132471745 Functional Loss - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29650004 chr1:29650006 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_87342 0 0 1 0 1 PTPRU chr1:29650008 5'GT 29650008 Upstream 3bp
chr2 42119696 42119696 1 + G A rs58250539 42119693 + 42119673 42119713 41 AGGCCCAGGGTCACCACAAACCCGGGAGACATGAGGCCAGG AGGCCCAGGGTCACCACAAACCCAGGAGACATGAGGCCAGG < 41bp 0.73719221386708 0.524339820688862 0.8203691 0.32793826 prediction 0.425704786356436 Functional Loss - LINC01913 ENSG00000214691 ncRNA_exonic Human lincRNA chr2:42119693 chr2:42119696 . . 0 24 hm5C_associated_SNPs_87343 0 0 0 0 1 LINC01913 chr2:42119669 3'AG 42119669 Downstream 28bp
chr9 35679202 35679202 1 + G T UCEC 35679200 + 35679180 35679220 41 AGGCTCAGAGACTCAGGTCCCAGGACTGGACATATCTGCAC AGGCTCAGAGACTCAGGTCCCATGACTGGACATATCTGCAC < 41bp 0.906838725875157 0.69398745162678 0.8489115 0.13481614 prediction 0.425702548496755 Functional Loss - CA9 ENSG00000107159 CDS Human protein_coding chr9:35679200 chr9:35679202 stopgain 0.646 1 23 hm5C_associated_SNPs_87344 0 0 1 0 1 CA9 chr9:35679182 3'AG 35679182 Downstream 21bp
chr4 158254056 158254056 1 + G A HNSC 158254053 + 158254033 158254073 41 GAAGCAAAGAATTGAAATCTCCCGAAGGGGGAATGCAGGAG GAAGCAAAGAATTGAAATCTCCCAAAGGGGGAATGCAGGAG < 41bp 0.7398111942769 0.526961450923436 0.12227544 0.106038004 prediction 0.425699486706927 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158254053 chr4:158254056 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_87345 0 0 1 0 2 GRIA2 chr4:158253971 3'AG 158253971 Downstream 86bp
chr4 158254056 158254056 1 + G A HNSC 158254053 + 158254033 158254073 41 GAAGCAAAGAATTGAAATCTCCCGAAGGGGGAATGCAGGAG GAAGCAAAGAATTGAAATCTCCCAAAGGGGGAATGCAGGAG < 41bp 0.7398111942769 0.526961450923436 0.12227544 0.106038004 prediction 0.425699486706927 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158254053 chr4:158254056 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_87345 0 0 1 0 2 GRIA2 chr4:158254138 5'GT 158254138 Upstream 83bp
chr9 78710956 78710956 1 + G A SKCM 78710953 + 78710933 78710973 41 GCGGAAAGAAACCTTGGTACCTGGAAGAGTGTTCATCCACG GCGGAAAGAAACCTTGGTACCTGAAAGAGTGTTCATCCACG < 41bp 0.763578810902127 0.550732088700941 0.1875076 0.08141783 prediction 0.425693444402372 Functional Loss - PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78710953 chr9:78710956 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_87349 0 0 0 0 1 PCSK5 chr9:78711018 5'GT 78711018 Upstream 63bp
chr3 37285055 37285055 1 + T C COAD 37285054 + 37285034 37285074 41 GCTGCGCCATGTTCAAGAAACTGAAGCAAAAGATCAGCGAG GCTGCGCCATGTTCAAGAAACCGAAGCAAAAGATCAGCGAG < 41bp 0.712844108183958 0.493090673366187 0.7480212 0.3748935 prediction 0.425688216367916 Functional Loss - GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37285054 chr3:37285055 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_87351 0 0 1 0 1 GOLGA4 chr3:37285113 5'GT 37285113 Upstream 59bp
chr10 73983767 73983767 1 + G A rs147690332 73983764 + 73983744 73983784 41 TGTCTCAGACCTTGCCCCACCACGGAAAGCCCTTTTCACCT TGTCTCAGACCTTGCCCCACCACAGAAAGCCCTTTTCACCT < 41bp 0.712841950186488 0.476992170523237 0.19160196 0.17468101 prediction 0.425683900372977 Functional Loss - ANAPC16 ENSG00000166295 CDS Human protein_coding chr10:73983764 chr10:73983767 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_87353 0 0 1 0 1 ANAPC16 chr10:73983814 5'GT 73983814 Upstream 48bp
chr17 41139398 41139398 1 + G A rs138665314 41139395 + 41139375 41139415 41 TATCAAGAGGGCAGTTATGACTCGCTGCCACAGTCCGTGGT TATCAAGAGGGCAGTTATGACTCACTGCCACAGTCCGTGGT < 41bp 0.712834572863734 0.480240401425172 0.30661383 0.052466273 prediction 0.425669145727469 Functional Loss - RUNDC1 ENSG00000198863 CDS Human protein_coding chr17:41139395 chr17:41139398 synonymous SNV . 0 24 hm5C_associated_SNPs_87355 0 0 1 0 1 RUNDC1 chr17:41139431 5'GT 41139431 Upstream 34bp
chr3 53220652 53220652 1 + C T PAAD 53220649 + 53220629 53220669 41 TTCTTTGTGATGGAGTTCCTCAACGGGGGGGACCTGATGTA TTCTTTGTGATGGAGTTCCTCAATGGGGGGGACCTGATGTA < 41bp 0.712832276807982 0.491532192002779 0.75184166 0.57273304 prediction 0.425664553615964 Functional Loss - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53220649 chr3:53220652 synonymous SNV . 0 24 hm5C_associated_SNPs_87357 0 0 0 0 2 PRKCD chr3:53220620 3'AG 53220620 Downstream 33bp
chr3 53220652 53220652 1 + C T PAAD 53220649 + 53220629 53220669 41 TTCTTTGTGATGGAGTTCCTCAACGGGGGGGACCTGATGTA TTCTTTGTGATGGAGTTCCTCAATGGGGGGGACCTGATGTA < 41bp 0.712832276807982 0.491532192002779 0.75184166 0.57273304 prediction 0.425664553615964 Functional Loss - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53220649 chr3:53220652 synonymous SNV . 0 24 hm5C_associated_SNPs_87357 0 0 0 0 2 PRKCD chr3:53220711 5'GT 53220711 Upstream 60bp
chr19 41736918 41736918 1 + G A SKCM 41736915 + 41736895 41736935 41 TCCTGCGAAGCCCATAACGCCAAGGGGGTCACCACATCCCG TCCTGCGAAGCCCATAACGCCAAAGGGGTCACCACATCCCG < 41bp 0.712824200029647 0.461004827108745 0.8091942 0.3671798 prediction 0.425648400059295 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41736915 chr19:41736918 synonymous SNV . 0 24 hm5C_associated_SNPs_87363 0 0 0 0 2 AXL chr19:41736872 3'AG 41736872 Downstream 47bp
chr19 41736918 41736918 1 + G A SKCM 41736915 + 41736895 41736935 41 TCCTGCGAAGCCCATAACGCCAAGGGGGTCACCACATCCCG TCCTGCGAAGCCCATAACGCCAAAGGGGTCACCACATCCCG < 41bp 0.712824200029647 0.461004827108745 0.8091942 0.3671798 prediction 0.425648400059295 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41736915 chr19:41736918 synonymous SNV . 0 24 hm5C_associated_SNPs_87363 0 0 0 0 2 AXL chr19:41736952 5'GT 41736952 Upstream 35bp
chr1 42620483 42620483 1 + G T LUSC 42620480 + 42620460 42620500 41 GCCACCACCCTGCTCTGCCTCAGGACCTTCAGCCTGTCTGC GCCACCACCCTGCTCTGCCTCAGTACCTTCAGCCTGTCTGC < 41bp 0.93698286882729 0.724160171348546 0.92658424 0.40824378 prediction 0.425645394957489 Functional Loss - GUCA2B ENSG00000044012 CDS Human protein_coding chr1:42620480 chr1:42620483 nonsynonymous SNV 0.451 4 24 hm5C_associated_SNPs_87367 0 0 0 0 1 GUCA2B chr1:42620537 5'GT 42620537 Upstream 55bp
chr3 51680453 51680453 1 + C T UCEC 51680450 + 51680430 51680470 41 TATGCGCAGTATTACCCTGCCAGCGATCAGAGCCTGACCAG TATGCGCAGTATTACCCTGCCAGTGATCAGAGCCTGACCAG < 41bp 0.712820502318316 0.493807365475071 0.10730508 0.16297048 prediction 0.425641004636632 Functional Loss - RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51680450 chr3:51680453 synonymous SNV . 0 24 hm5C_associated_SNPs_87369 0 0 1 0 1 RAD54L2 chr3:51680497 5'GT 51680497 Upstream 45bp
chr1 20412658 20412658 1 + C T BLCA 20412655 + 20412635 20412675 41 GGGAAGAACGCCCTGACAAACTACGGCTTCTACGGCTGTTA GGGAAGAACGCCCTGACAAACTATGGCTTCTACGGCTGTTA < 41bp 0.712812094236922 0.493273614931951 0.2799161 0.2245534 prediction 0.425624188473844 Functional Loss - PLA2G5 ENSG00000127472 CDS Human protein_coding chr1:20412655 chr1:20412658 synonymous SNV . 0 24 hm5C_associated_SNPs_87372 0 0 0 0 2 PLA2G5 chr1:20412576 3'AG 20412576 Downstream 83bp
chr1 20412658 20412658 1 + C T BLCA 20412655 + 20412635 20412675 41 GGGAAGAACGCCCTGACAAACTACGGCTTCTACGGCTGTTA GGGAAGAACGCCCTGACAAACTATGGCTTCTACGGCTGTTA < 41bp 0.712812094236922 0.493273614931951 0.2799161 0.2245534 prediction 0.425624188473844 Functional Loss - PLA2G5 ENSG00000127472 CDS Human protein_coding chr1:20412655 chr1:20412658 synonymous SNV . 0 24 hm5C_associated_SNPs_87372 0 0 0 0 2 PLA2G5 chr1:20412720 5'GT 20412720 Upstream 63bp
chr20 61453154 61453154 1 + G A UCEC 61453151 + 61453131 61453171 41 CCCCAGGTGGGATCGGCCTCCGCGGCCCCCCGGTGAGTGGC CCCCAGGTGGGATCGGCCTCCGCAGCCCCCCGGTGAGTGGC < 41bp 0.805754679304862 0.592944976487187 0.88961816 0.71690714 prediction 0.42561940563535 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61453151 chr20:61453154 nonsynonymous SNV 0.799 3 24 hm5C_associated_SNPs_87376 0 0 1 0 2 COL9A3 chr20:61453109 3'AG 61453109 Downstream 46bp
chr20 61453154 61453154 1 + G A UCEC 61453151 + 61453131 61453171 41 CCCCAGGTGGGATCGGCCTCCGCGGCCCCCCGGTGAGTGGC CCCCAGGTGGGATCGGCCTCCGCAGCCCCCCGGTGAGTGGC < 41bp 0.805754679304862 0.592944976487187 0.88961816 0.71690714 prediction 0.42561940563535 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61453151 chr20:61453154 nonsynonymous SNV 0.799 3 24 hm5C_associated_SNPs_87376 0 0 1 0 2 COL9A3 chr20:61453162 5'GT 61453162 Upstream 9bp
chr5 76335437 76335437 1 + C T UCEC 76335435 + 76335415 76335455 41 TGGTCGTTATCAGTTTCATTCTCGAGTAGATTTGCAACCTT TGGTCGTTATCAGTTTCATTCTTGAGTAGATTTGCAACCTT < 41bp 0.872633384773403 0.659828214454739 0.39301047 0.17795524 prediction 0.425610340637327 Functional Loss - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76335435 chr5:76335437 stopgain 0.997 1 23 hm5C_associated_SNPs_87378 0 0 0 3 1 AGGF1 chr5:76335356 3'AG 76335356 Downstream 82bp
chr11 128786323 128786323 1 + G A rs192889782 128786320 + 128786300 128786340 41 CCAGGCATGACCTGCCAAGCCCGGAGCTCCTACATGGATAC CCAGGCATGACCTGCCAAGCCCGAAGCTCCTACATGGATAC < 41bp 0.798238398258887 0.585439550005245 0.46480078 0.1398946 prediction 0.425597696507284 Functional Loss - KCNJ5 ENSG00000120457 CDS Human protein_coding chr11:128786320 chr11:128786323 synonymous SNV . 0 24 hm5C_associated_SNPs_87381 4 0 0 0 1 KCNJ5 chr11:128786304 3'AG 128786304 Downstream 20bp
chr15 22997855 22997855 1 + G A HNSC 22997852 + 22997832 22997872 41 TCCTTTCCAGAACATCTTGCCGCGAGTCCATGTGAAAGGTG TCCTTTCCAGAACATCTTGCCGCAAGTCCATGTGAAAGGTG < 41bp 0.790559283657117 0.577762756971063 0.24020952 0.09914601 prediction 0.425593053372109 Functional Loss - CYFIP1 ENSG00000068793 CDS Human other chr15:22997852 chr15:22997855 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_87383 0 0 1 0 2 CYFIP1 chr15:22997797 3'AG 22997797 Downstream 59bp
chr15 22997855 22997855 1 + G A HNSC 22997852 + 22997832 22997872 41 TCCTTTCCAGAACATCTTGCCGCGAGTCCATGTGAAAGGTG TCCTTTCCAGAACATCTTGCCGCAAGTCCATGTGAAAGGTG < 41bp 0.790559283657117 0.577762756971063 0.24020952 0.09914601 prediction 0.425593053372109 Functional Loss - CYFIP1 ENSG00000068793 CDS Human other chr15:22997852 chr15:22997855 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_87383 0 0 1 0 2 CYFIP1 chr15:22997869 5'GT 22997869 Upstream 15bp
chr3 183906570 183906570 1 + A C LUSC 183906569 + 183906549 183906589 41 GGCGGAGGGCTCTGAAGCTGCAGAGCTGGCAGAAATCTATG GGCGGAGGGCTCTGAAGCTGCCGAGCTGGCAGAAATCTATG < 41bp 0.712794833308633 0.441986056746274 0.8118502 0.54310703 prediction 0.425589666617266 Functional Loss - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183906569 chr3:183906570 synonymous SNV . 0 22 hm5C_associated_SNPs_87384 0 0 1 0 2 ABCF3 chr3:183906549 3'AG 183906549 Downstream 22bp
chr3 183906570 183906570 1 + A C LUSC 183906569 + 183906549 183906589 41 GGCGGAGGGCTCTGAAGCTGCAGAGCTGGCAGAAATCTATG GGCGGAGGGCTCTGAAGCTGCCGAGCTGGCAGAAATCTATG < 41bp 0.712794833308633 0.441986056746274 0.8118502 0.54310703 prediction 0.425589666617266 Functional Loss - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183906569 chr3:183906570 synonymous SNV . 0 22 hm5C_associated_SNPs_87384 0 0 1 0 2 ABCF3 chr3:183906629 5'GT 183906629 Upstream 60bp
chr10 293353 293353 1 + G A COAD 293350 + 293330 293370 41 GCCCACAGCTAAAGGTCACTCAAGAACCAAGAGCAAAGAAA GCCCACAGCTAAAGGTCACTCAAAAACCAAGAGCAAAGAAA < 41bp 0.743964699743425 0.531170737207406 0.14352134 0.124067515 prediction 0.425587925072038 Functional Loss - ZMYND11 ENSG00000015171 CDS Human protein_coding chr10:293350 chr10:293353 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_87386 0 0 0 0 2 ZMYND11 chr10:293338 3'AG 293338 Downstream 16bp
chr10 293353 293353 1 + G A COAD 293350 + 293330 293370 41 GCCCACAGCTAAAGGTCACTCAAGAACCAAGAGCAAAGAAA GCCCACAGCTAAAGGTCACTCAAAAACCAAGAGCAAAGAAA < 41bp 0.743964699743425 0.531170737207406 0.14352134 0.124067515 prediction 0.425587925072038 Functional Loss - ZMYND11 ENSG00000015171 CDS Human protein_coding chr10:293350 chr10:293353 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_87386 0 0 0 0 2 ZMYND11 chr10:293406 5'GT 293406 Upstream 54bp
chr16 20787240 20787240 1 + T C rs5713 20787239 + 20787219 20787259 41 TGCGATGGAGTTTTGAGGAACTGGGATCTCTGTCCAGAAAA TGCGATGGAGTTTTGAGGAACCGGGATCTCTGTCCAGAAAA < 41bp 0.79752790755272 0.584738016330574 0.47472668 0.544234 prediction 0.425579782444292 Functional Loss - ACSM3 ENSG00000005187 CDS Human protein_coding chr16:20787239 chr16:20787240 nonsynonymous SNV 0.971 4 22 hm5C_associated_SNPs_87389 0 0 1 0 1 ACSM3 chr16:20787161 3'AG 20787161 Downstream 80bp
chr14 73407053 73407053 1 + C T UCEC 73407050 + 73407030 73407070 41 AGGAGATGGAGAGCAAGAGACTGCGGCTGCTCCAGGAAGAA AGGAGATGGAGAGCAAGAGACTGTGGCTGCTCCAGGAAGAA < 41bp 0.760665130728115 0.54787586769308 0.47689146 0.25526276 prediction 0.425578526070069 Functional Loss - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73407050 chr14:73407053 nonsynonymous SNV 0.576 1 24 hm5C_associated_SNPs_87390 0 0 1 0 2 DCAF4 chr14:73406960 3'AG 73406960 Downstream 94bp
chr14 73407053 73407053 1 + C T UCEC 73407050 + 73407030 73407070 41 AGGAGATGGAGAGCAAGAGACTGCGGCTGCTCCAGGAAGAA AGGAGATGGAGAGCAAGAGACTGTGGCTGCTCCAGGAAGAA < 41bp 0.760665130728115 0.54787586769308 0.47689146 0.25526276 prediction 0.425578526070069 Functional Loss - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73407050 chr14:73407053 nonsynonymous SNV 0.576 1 24 hm5C_associated_SNPs_87390 0 0 1 0 2 DCAF4 chr14:73407085 5'GT 73407085 Upstream 33bp
chr5 148989210 148989210 1 + A T SKCM 148989206 + 148989186 148989226 41 TGCTACTGGTGGACACGTACCGGAAGGAGCCGGAGCTGCAG TGCTACTGGTGGACACGTACCGGATGGAGCCGGAGCTGCAG < 41bp 0.90060392333586 0.687815899304865 0.67644644 0.6610858 prediction 0.425576048061991 Functional Loss - ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:148989206 chr5:148989210 nonsynonymous SNV 0.320 3 25 hm5C_associated_SNPs_87391 0 0 0 0 2 ARHGEF37 chr5:148989111 3'AG 148989111 Downstream 100bp
chr5 148989210 148989210 1 + A T SKCM 148989206 + 148989186 148989226 41 TGCTACTGGTGGACACGTACCGGAAGGAGCCGGAGCTGCAG TGCTACTGGTGGACACGTACCGGATGGAGCCGGAGCTGCAG < 41bp 0.90060392333586 0.687815899304865 0.67644644 0.6610858 prediction 0.425576048061991 Functional Loss - ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:148989206 chr5:148989210 nonsynonymous SNV 0.320 3 25 hm5C_associated_SNPs_87391 0 0 0 0 2 ARHGEF37 chr5:148989258 5'GT 148989258 Upstream 49bp
chr4 1283680 1283680 1 + C T rs201086420 1283678 + 1283658 1283698 41 GCGCTCGCGCGTCCCCCGCCCGCTAATGTTTTGGCCGCTTC GCGCTCGCGCGTCCCCCGCCCGTTAATGTTTTGGCCGCTTC < 41bp 0.77811183685401 0.5653249599507 0.21399045 0.114236 prediction 0.42557375380662 Functional Loss - MAEA ENSG00000090316 UTR5 Human protein_coding chr4:1283678 chr4:1283680 . . 0 23 hm5C_associated_SNPs_87392 0 0 1 0 1 MAEA chr4:1283770 5'GT 1283770 Upstream 91bp
chr19 16631002 16631002 1 - G A HNSC 16631005 - 16630985 16631025 41 GTCCCGGTCCAAGTCGTACTCCCCAGGAAGAAGACGCCGGT GTCCCGGTCCAAGTCGTACTCCCTAGGAAGAAGACGCCGGT < 41bp 0.737984255356412 0.525198388760618 0.2415112 0.24267042 prediction 0.425571733191588 Functional Loss - CHERP ENSG00000085872 CDS Human protein_coding chr19:16631005 chr19:16631002 nonsynonymous SNV 0.545 0 24 hm5C_associated_SNPs_87393 0 0 1 0 2 CHERP chr19:16630960 5'GT 16630960 Upstream 43bp
chr19 16631002 16631002 1 - G A HNSC 16631005 - 16630985 16631025 41 GTCCCGGTCCAAGTCGTACTCCCCAGGAAGAAGACGCCGGT GTCCCGGTCCAAGTCGTACTCCCTAGGAAGAAGACGCCGGT < 41bp 0.737984255356412 0.525198388760618 0.2415112 0.24267042 prediction 0.425571733191588 Functional Loss - CHERP ENSG00000085872 CDS Human protein_coding chr19:16631005 chr19:16631002 nonsynonymous SNV 0.545 0 24 hm5C_associated_SNPs_87393 0 0 1 0 2 CHERP chr19:16631076 3'AG 16631076 Downstream 75bp
chr22 42354219 42354219 1 + G A UCEC 42354216 + 42354196 42354236 41 ACTCTGCCCTCCACTGGACTCAGGCATGTCTATGGCTGCCT ACTCTGCCCTCCACTGGACTCAGACATGTCTATGGCTGCCT < 41bp 0.712783932787155 0.459574164216243 0.91081977 0.8297771 prediction 0.42556786557431 Functional Loss - LINC00634 ENSG00000205704 ncRNA_exonic Human transcribed_unitary_pseudogene chr22:42354216 chr22:42354219 . . 0 24 hm5C_associated_SNPs_87394 0 0 0 0 1 LINC00634 chr22:42354219 3'AG 42354219 Downstream 1bp
chr6 74176063 74176063 1 + C T COAD 74176060 + 74176040 74176080 41 TACATTATAAAGTATTAAACCGGCGTAAGGGACCAGCTGTG TACATTATAAAGTATTAAACCGGTGTAAGGGACCAGCTGTG < 41bp 0.750299455620303 0.537520498497484 0.84909153 0.7874204 prediction 0.425557914245639 Functional Loss - MTO1 ENSG00000135297 CDS Human protein_coding chr6:74176060 chr6:74176063 nonsynonymous SNV 0.994 0 24 hm5C_associated_SNPs_87398 0 0 0 0 1 MTO1 chr6:74176131 5'GT 74176131 Upstream 69bp
chr17 19451355 19451355 1 + G A rs150632967 19451352 + 19451332 19451372 41 TGATCCTGCAGCGGAGTGCGCTCGTCCTGCTCCTCTGCTGC TGATCCTGCAGCGGAGTGCGCTCATCCTGCTCCTCTGCTGC < 41bp 0.712774454149583 0.455148133160418 0.088799864 0.07177237 prediction 0.425548908299165 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19451352 chr17:19451355 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_87402 0 0 1 6 1 SLC47A1 chr17:19451446 5'GT 19451446 Upstream 92bp
chr17 19451353 19451353 1 + T C ESCA 19451352 + 19451332 19451372 41 TGATCCTGCAGCGGAGTGCGCTCGTCCTGCTCCTCTGCTGC TGATCCTGCAGCGGAGTGCGCCCGTCCTGCTCCTCTGCTGC < 41bp 0.712774454149583 0.46082773940452 0.088799864 0.06165743 prediction 0.425548908299165 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19451352 chr17:19451353 nonsynonymous SNV 0.003 4 22 hm5C_associated_SNPs_87403 0 0 1 4 1 SLC47A1 chr17:19451446 5'GT 19451446 Upstream 94bp
chr17 19451354 19451354 1 + C T UCEC 19451352 + 19451332 19451372 41 TGATCCTGCAGCGGAGTGCGCTCGTCCTGCTCCTCTGCTGC TGATCCTGCAGCGGAGTGCGCTTGTCCTGCTCCTCTGCTGC < 41bp 0.712774454149583 0.438860126283009 0.088799864 0.07988343 prediction 0.425548908299165 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19451352 chr17:19451354 synonymous SNV . 0 23 hm5C_associated_SNPs_87404 0 0 1 6 1 SLC47A1 chr17:19451446 5'GT 19451446 Upstream 93bp
chr5 23522456 23522456 1 + A T rs185548599 23522454 + 23522434 23522474 41 AAAGAAAGATGTATAGCCTGCGAGAAAGAAAGGGTCATGCA AAAGAAAGATGTATAGCCTGCGTGAAAGAAAGGGTCATGCA < 41bp 0.73880509855709 0.526031347792197 0.68654054 0.22604051 prediction 0.425547501529787 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23522454 chr5:23522456 synonymous SNV . 0 23 hm5C_associated_SNPs_87406 0 0 0 0 2 PRDM9 chr5:23522413 3'AG 23522413 Downstream 44bp
chr5 23522456 23522456 1 + A T rs185548599 23522454 + 23522434 23522474 41 AAAGAAAGATGTATAGCCTGCGAGAAAGAAAGGGTCATGCA AAAGAAAGATGTATAGCCTGCGTGAAAGAAAGGGTCATGCA < 41bp 0.73880509855709 0.526031347792197 0.68654054 0.22604051 prediction 0.425547501529787 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23522454 chr5:23522456 synonymous SNV . 0 23 hm5C_associated_SNPs_87406 0 0 0 0 2 PRDM9 chr5:23522514 5'GT 23522514 Upstream 59bp
chr12 21201773 21201773 1 + T C COAD 21201772 + 21201752 21201792 41 TGCAACAGTGCATCTCTTATCTCAAGTTTTATATTTCTTTC TGCAACAGTGCATCTCTTATCCCAAGTTTTATATTTCTTTC < 41bp 0.712772153251489 0.469172057207196 0.1713031 0.2756446 prediction 0.425544306502978 Functional Loss - SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21201772 chr12:21201773 synonymous SNV . 0 22 hm5C_associated_SNPs_87407 0 0 0 0 1 SLCO1B7 chr12:21201841 5'GT 21201841 Upstream 69bp
chr6 96999380 96999380 1 + G T UCEC 96999378 + 96999358 96999398 41 TTACAAAACTCCATAACTCTCTGAATGAAAAGGTAAGTAAA TTACAAAACTCCATAACTCTCTTAATGAAAAGGTAAGTAAA < 41bp 0.712770311602895 0.397102355783953 0.12797982 0.052514613 prediction 0.42554062320579 Functional Loss - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96999378 chr6:96999380 synonymous SNV . 0 23 hm5C_associated_SNPs_87408 0 0 1 0 2 UFL1 chr6:96999309 3'AG 96999309 Downstream 72bp
chr6 96999380 96999380 1 + G T UCEC 96999378 + 96999358 96999398 41 TTACAAAACTCCATAACTCTCTGAATGAAAAGGTAAGTAAA TTACAAAACTCCATAACTCTCTTAATGAAAAGGTAAGTAAA < 41bp 0.712770311602895 0.397102355783953 0.12797982 0.052514613 prediction 0.42554062320579 Functional Loss - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96999378 chr6:96999380 synonymous SNV . 0 23 hm5C_associated_SNPs_87408 0 0 1 0 2 UFL1 chr6:96999389 5'GT 96999389 Upstream 10bp
chr16 57608821 57608821 1 + C T COAD 57608819 + 57608799 57608839 41 CCTGGTGGTGCTGGCCTGGGCGCTGTGGACCCTGCGCAGGC CCTGGTGGTGCTGGCCTGGGCGTTGTGGACCCTGCGCAGGC < 41bp 0.712766573724045 0.447686870035102 0.5431772 0.50086313 prediction 0.425533147448091 Functional Loss - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57608819 chr16:57608821 synonymous SNV . 0 23 hm5C_associated_SNPs_87412 0 0 0 0 1 ADGRG5 chr16:57608727 3'AG 57608727 Downstream 95bp
chr13 109779875 109779875 1 + C T STAD 109779873 + 109779853 109779893 41 GCTGTGAGCGCCTGCCTCTCCGCGGCCAGGGAAGCGGCCAA GCTGTGAGCGCCTGCCTCTCCGTGGCCAGGGAAGCGGCCAA < 41bp 0.811330597686502 0.598564504715386 0.7032167 0.3374272 prediction 0.425532185942232 Functional Loss - MYO16 ENSG00000041515 CDS Human protein_coding chr13:109779873 chr13:109779875 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_87414 0 0 0 0 1 MYO16 chr13:109779898 5'GT 109779898 Upstream 24bp
chr2 223423149 223423149 1 + G A rs146973494 223423146 + 223423126 223423166 41 ACCTTCATCGACTGCCTGGACTCGGCCAGCCCCCTCTTCCC ACCTTCATCGACTGCCTGGACTCAGCCAGCCCCCTCTTCCC < 41bp 0.82315167311848 0.61038890580024 0.2365076 0.08668044 prediction 0.425525534636481 Functional Loss - SGPP2 ENSG00000163082 CDS Human protein_coding chr2:223423146 chr2:223423149 synonymous SNV . 0 24 hm5C_associated_SNPs_87416 0 0 0 0 1 SGPP2 chr2:223423066 3'AG 223423066 Downstream 84bp
chr2 113737665 113737665 1 + G T UCEC 113737662 + 113737642 113737682 41 GATCCCATTTATTTGGGAATCCAGAATCCAGAAATGTGTTT GATCCCATTTATTTGGGAATCCATAATCCAGAAATGTGTTT < 41bp 0.712761748673193 0.327589131026281 0.20382562 0.18703023 prediction 0.425523497346387 Functional Loss - IL36G ENSG00000136688 CDS Human protein_coding chr2:113737662 chr2:113737665 nonsynonymous SNV 0.387 1 24 hm5C_associated_SNPs_87418 0 0 0 0 2 IL36G chr2:113737586 3'AG 113737586 Downstream 80bp
chr2 113737665 113737665 1 + G T UCEC 113737662 + 113737642 113737682 41 GATCCCATTTATTTGGGAATCCAGAATCCAGAAATGTGTTT GATCCCATTTATTTGGGAATCCATAATCCAGAAATGTGTTT < 41bp 0.712761748673193 0.327589131026281 0.20382562 0.18703023 prediction 0.425523497346387 Functional Loss - IL36G ENSG00000136688 CDS Human protein_coding chr2:113737662 chr2:113737665 nonsynonymous SNV 0.387 1 24 hm5C_associated_SNPs_87418 0 0 0 0 2 IL36G chr2:113737725 5'GT 113737725 Upstream 61bp
chr16 80577175 80577175 1 + A C BRCA 80577174 + 80577154 80577194 41 TCTTCCTGGTCTCTTTCAGGCAGAGGTGGAGGAAACCTTAA TCTTCCTGGTCTCTTTCAGGCCGAGGTGGAGGAAACCTTAA < 41bp 0.712760824701659 0.457532057153698 0.5385791 0.15530196 prediction 0.425521649403319 Functional Loss - DYNLRB2 ENSG00000168589 CDS Human protein_coding chr16:80577174 chr16:80577175 synonymous SNV . 0 22 hm5C_associated_SNPs_87419 0 0 0 0 2 DYNLRB2 chr16:80577173 3'AG 80577173 Downstream 3bp
chr16 80577175 80577175 1 + A C BRCA 80577174 + 80577154 80577194 41 TCTTCCTGGTCTCTTTCAGGCAGAGGTGGAGGAAACCTTAA TCTTCCTGGTCTCTTTCAGGCCGAGGTGGAGGAAACCTTAA < 41bp 0.712760824701659 0.457532057153698 0.5385791 0.15530196 prediction 0.425521649403319 Functional Loss - DYNLRB2 ENSG00000168589 CDS Human protein_coding chr16:80577174 chr16:80577175 synonymous SNV . 0 22 hm5C_associated_SNPs_87419 0 0 0 0 2 DYNLRB2 chr16:80577248 5'GT 80577248 Upstream 74bp
chr20 26061960 26061960 1 + T C LIHC 26061959 + 26061939 26061979 41 TCCCGGAGGGGTCTCTGCGCCTCAGTCGGCATCGCAGCTGA TCCCGGAGGGGTCTCTGCGCCCCAGTCGGCATCGCAGCTGA < 41bp 0.712759331887069 0.460365208284856 0.094557256 0.042669773 prediction 0.425518663774139 Functional Loss - FAM182A ENSG00000125804 ncRNA_exonic Human processed_transcript chr20:26061959 chr20:26061960 . . 0 22 hm5C_associated_SNPs_87420 0 0 0 0 1 FAM182A chr20:26062026 5'GT 26062026 Upstream 67bp
chr3 11067215 11067215 1 + G A SKCM 11067212 + 11067192 11067232 41 GGAGTGACGCTGCCCGGGGCCAAGGAGGGCATCCTCTTCTA GGAGTGACGCTGCCCGGGGCCAAAGAGGGCATCCTCTTCTA < 41bp 0.817468426222835 0.6047111277563 0.63791585 0.23329341 prediction 0.42551459693307 Functional Loss - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11067212 chr3:11067215 synonymous SNV . 0 24 hm5C_associated_SNPs_87422 0 0 0 0 2 SLC6A1 chr3:11067135 3'AG 11067135 Downstream 81bp
chr3 11067215 11067215 1 + G A SKCM 11067212 + 11067192 11067232 41 GGAGTGACGCTGCCCGGGGCCAAGGAGGGCATCCTCTTCTA GGAGTGACGCTGCCCGGGGCCAAAGAGGGCATCCTCTTCTA < 41bp 0.817468426222835 0.6047111277563 0.63791585 0.23329341 prediction 0.42551459693307 Functional Loss - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11067212 chr3:11067215 synonymous SNV . 0 24 hm5C_associated_SNPs_87422 0 0 0 0 2 SLC6A1 chr3:11067269 5'GT 11067269 Upstream 55bp
chr12 130841563 130841563 1 + G A GBM 130841560 + 130841540 130841580 41 TAACTGGCTGTTGATCTATACGCGAAGAAATTATGAAGCAG TAACTGGCTGTTGATCTATACGCAAAGAAATTATGAAGCAG < 41bp 0.772729795811105 0.559973195694921 0.13143674 0.0368312 prediction 0.425513200232368 Functional Loss - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130841560 chr12:130841563 nonsynonymous SNV 0.483 2 24 hm5C_associated_SNPs_87423 0 0 0 0 1 PIWIL1 chr12:130841650 5'GT 130841650 Upstream 88bp
chr14 105958614 105958614 1 + G A SKCM 105958611 + 105958591 105958631 41 AGCAGATGCTGGCCCAGGCCCGAGTGCCTCTGGGTGACGAG AGCAGATGCTGGCCCAGGCCCGAATGCCTCTGGGTGACGAG < 41bp 0.712755911160109 0.456572313588405 0.39666092 0.33241522 prediction 0.425511822320219 Functional Loss - C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105958611 chr14:105958614 nonsynonymous SNV 0.029 3 24 hm5C_associated_SNPs_87424 0 0 1 0 1 C14orf80 chr14:105958646 5'GT 105958646 Upstream 33bp
chr17 40835917 40835917 1 + C T BRCA 40835914 + 40835894 40835934 41 CTCCTACTACAGTCTCCTTACTGCGCCGAGATTCGCCAGGC CTCCTACTACAGTCTCCTTACTGTGCCGAGATTCGCCAGGC < 41bp 0.724497152178807 0.511742667808495 0.734607 0.5345476 prediction 0.425508968740623 Functional Loss - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40835914 chr17:40835917 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_87426 0 0 1 0 2 CNTNAP1 chr17:40835839 3'AG 40835839 Downstream 79bp
chr17 40835917 40835917 1 + C T BRCA 40835914 + 40835894 40835934 41 CTCCTACTACAGTCTCCTTACTGCGCCGAGATTCGCCAGGC CTCCTACTACAGTCTCCTTACTGTGCCGAGATTCGCCAGGC < 41bp 0.724497152178807 0.511742667808495 0.734607 0.5345476 prediction 0.425508968740623 Functional Loss - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40835914 chr17:40835917 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_87426 0 0 1 0 2 CNTNAP1 chr17:40835940 5'GT 40835940 Upstream 24bp
chr13 111371670 111371670 1 + G C LUSC 111371669 + 111371649 111371689 41 GCTGCACTGTGTGCAGCGCGCGCTGATCCGCAGCCAGGAGC GCTGCACTGTGTGCAGCGCGCCCTGATCCGCAGCCAGGAGC < 41bp 0.712754390620143 0.384763778312217 0.16797328 0.029328465 prediction 0.425508781240286 Functional Loss - ING1 ENSG00000153487 CDS Human protein_coding chr13:111371669 chr13:111371670 synonymous SNV . 0 22 hm5C_associated_SNPs_87427 0 0 0 0 1 ING1 chr13:111371576 3'AG 111371576 Downstream 95bp
chr20 2375916 2375916 1 + A C SKCM 2375915 + 2375895 2375935 41 GGAGCGGGGTGAGGGCTGGACAGCAGCAAGGGAGGCTCAGA GGAGCGGGGTGAGGGCTGGACCGCAGCAAGGGAGGCTCAGA < 41bp 0.846518241586647 0.6337643992819 0.41417432 0.5378101 prediction 0.425507684609493 Functional Loss - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2375915 chr20:2375916 synonymous SNV . 0 22 hm5C_associated_SNPs_87428 0 0 0 0 1 TGM6 chr20:2375840 3'AG 2375840 Downstream 77bp
chr12 100904824 100904824 1 + G A COAD 100904821 + 100904801 100904841 41 ACAAAGAAGCCCCGCATGGGCGCGTCAGCAGGGAGGATCAA ACAAAGAAGCCCCGCATGGGCGCATCAGCAGGGAGGATCAA < 41bp 0.783472319631758 0.570719511525196 0.03426236 0.03563887 prediction 0.425505616213125 Functional Loss - NR1H4 ENSG00000012504 CDS Human protein_coding chr12:100904821 chr12:100904824 synonymous SNV . 0 24 hm5C_associated_SNPs_87431 0 0 0 1 1 NR1H4 chr12:100904921 5'GT 100904921 Upstream 98bp
chr2 85617913 85617913 1 + G A rs17850709 85617910 + 85617890 85617930 41 AGTATTGGCCAAGAAGAGCCCACGGCGGCTGCTCAAGACCC AGTATTGGCCAAGAAGAGCCCACAGCGGCTGCTCAAGACCC < 41bp 0.807345310079879 0.594593120704722 0.2910583 0.19755444 prediction 0.425504378750314 Functional Loss - ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85617910 chr2:85617913 nonsynonymous SNV 0.794 0 24 hm5C_associated_SNPs_87432 0 0 1 0 1 ELMOD3 chr2:85617883 3'AG 85617883 Downstream 31bp
chr5 148627436 148627436 1 + C T SKCM 148627434 + 148627414 148627454 41 CCCTGGACCCCTCCCCGGAGCTCCACCAGCAGCCGGGAAGC CCCTGGACCCCTCCCCGGAGCTTCACCAGCAGCCGGGAAGC < 41bp 0.7127515521959 0.414428228016793 0.8722469 0.20309946 prediction 0.4255031043918 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148627434 chr5:148627436 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_87433 0 0 0 0 2 ABLIM3 chr5:148627345 3'AG 148627345 Downstream 92bp
chr5 148627436 148627436 1 + C T SKCM 148627434 + 148627414 148627454 41 CCCTGGACCCCTCCCCGGAGCTCCACCAGCAGCCGGGAAGC CCCTGGACCCCTCCCCGGAGCTTCACCAGCAGCCGGGAAGC < 41bp 0.7127515521959 0.414428228016793 0.8722469 0.20309946 prediction 0.4255031043918 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148627434 chr5:148627436 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_87433 0 0 0 0 2 ABLIM3 chr5:148627492 5'GT 148627492 Upstream 57bp
chr12 58009385 58009385 1 - C T SKCM 58009388 - 58009368 58009408 41 AAAGAGGAAGACGCGCCTCTCTCGACCTCGGGAAGACAGCA AAAGAGGAAGACGCGCCTCTCTCAACCTCGGGAAGACAGCA < 41bp 0.788894245869294 0.57614941225823 0.85713726 0.3761643 prediction 0.425489667222128 Functional Loss - ARHGEF25 ENSG00000240771 CDS Human protein_coding chr12:58009388 chr12:58009385 stopgain 0.998 0 24 hm5C_associated_SNPs_87436 0 0 0 0 1 ARHGEF25 chr12:58009435 3'AG 58009435 Downstream 51bp
chr17 42925539 42925539 1 + T C rs553891653 42925538 + 42925518 42925558 41 ATTATGTCTGCTAACAGACGCTGGTGGGTACCACCTGACGA ATTATGTCTGCTAACAGACGCCGGTGGGTACCACCTGACGA < 41bp 0.747958073949636 0.535214005936168 0.199386 0.23007157 prediction 0.425488136026936 Functional Loss - HIGD1B ENSG00000131097 CDS Human protein_coding chr17:42925538 chr17:42925539 nonsynonymous SNV 0.949 0 22 hm5C_associated_SNPs_87437 0 0 0 0 1 HIGD1B chr17:42925620 5'GT 42925620 Upstream 82bp
chr22 37326752 37326752 1 + G A rs576486802 37326749 + 37326729 37326769 41 CCCCAGTGCTGAGGGAGGGGCTCGGCAGCCTCCACACCAGG CCCCAGTGCTGAGGGAGGGGCTCAGCAGCCTCCACACCAGG < 41bp 0.712740004833753 0.451375961767091 0.90162253 0.84921634 prediction 0.425480009667507 Functional Loss - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37326749 chr22:37326752 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_87442 0 0 0 0 2 CSF2RB chr22:37326697 3'AG 37326697 Downstream 56bp
chr22 37326752 37326752 1 + G A rs576486802 37326749 + 37326729 37326769 41 CCCCAGTGCTGAGGGAGGGGCTCGGCAGCCTCCACACCAGG CCCCAGTGCTGAGGGAGGGGCTCAGCAGCCTCCACACCAGG < 41bp 0.712740004833753 0.451375961767091 0.90162253 0.84921634 prediction 0.425480009667507 Functional Loss - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37326749 chr22:37326752 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_87442 0 0 0 0 2 CSF2RB chr22:37326715 3'AG 37326715 Downstream 38bp
chr12 52309043 52309043 1 + G A HNSC 52309040 + 52309020 52309060 41 TCAGACATGACCTCCCGCAACTCGAGCACGCAGCTGTGGCT TCAGACATGACCTCCCGCAACTCAAGCACGCAGCTGTGGCT < 41bp 0.810423394183704 0.597685673205662 0.14897862 0.17197946 prediction 0.425475441956084 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309040 chr12:52309043 synonymous SNV . 0 24 hm5C_associated_SNPs_87444 0 0 0 0 1 ACVRL1 chr12:52309009 3'AG 52309009 Downstream 35bp
chr4 128815008 128815008 1 + C T STAD 128815005 + 128814985 128815025 41 GGTCATGCATAGTGCTGCTTCTCCAACACAGGCACCAATCC GGTCATGCATAGTGCTGCTTCTCTAACACAGGCACCAATCC < 41bp 0.76174240942225 0.549005775185695 0.9487386 0.9046413 prediction 0.425473268473111 Functional Loss - PLK4 ENSG00000142731 CDS Human protein_coding chr4:128815005 chr4:128815008 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_87445 0 0 1 0 1 PLK4 chr4:128815036 5'GT 128815036 Upstream 29bp
chr2 216177064 216177064 1 + G T rs549768382 216177062 + 216177042 216177082 41 GCCCGCCTTAGAGCAGCTCGCGGGTGTAAGACCTGGGGAGG GCCCGCCTTAGAGCAGCTCGCGTGTGTAAGACCTGGGGAGG < 41bp 0.890119900664244 0.677383762706089 0.9239212 0.35517812 prediction 0.42547227591631 Functional Loss - ATIC ENSG00000138363;ENSG00000138363 UTR5;UTR3 Human other chr2:216177062 chr2:216177064 . . 0 23 hm5C_associated_SNPs_87446 0 0 1 0 1 ATIC chr2:216177113 5'GT 216177113 Upstream 50bp
chr17 48678109 48678109 1 + C T UCEC 48678107 + 48678087 48678127 41 AGCAAAGGGGAACGGGTCCGCGCGTGGATCCGAGCCCGACT AGCAAAGGGGAACGGGTCCGCGTGTGGATCCGAGCCCGACT < 41bp 0.754752373528943 0.542018731765135 0.25746796 0.17723659 prediction 0.425467283527616 Functional Loss - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48678107 chr17:48678109 nonsynonymous SNV 0.004 3 23 hm5C_associated_SNPs_87447 0 0 0 0 2 CACNA1G chr17:48678087 3'AG 48678087 Downstream 23bp
chr17 48678109 48678109 1 + C T UCEC 48678107 + 48678087 48678127 41 AGCAAAGGGGAACGGGTCCGCGCGTGGATCCGAGCCCGACT AGCAAAGGGGAACGGGTCCGCGTGTGGATCCGAGCCCGACT < 41bp 0.754752373528943 0.542018731765135 0.25746796 0.17723659 prediction 0.425467283527616 Functional Loss - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48678107 chr17:48678109 nonsynonymous SNV 0.004 3 23 hm5C_associated_SNPs_87447 0 0 0 0 2 CACNA1G chr17:48678187 5'GT 48678187 Upstream 79bp
chr8 43159898 43159898 1 + G A SKCM 43159895 + 43159875 43159915 41 CCAGATGCCAAACAACTCTTCTGGAAATAGCAATCCAGGTA CCAGATGCCAAACAACTCTTCTGAAAATAGCAATCCAGGTA < 41bp 0.712732937682372 0.497522973133433 0.3854789 0.1859369 prediction 0.425465875364743 Functional Loss - POTEA ENSG00000188877 ncRNA_exonic Human polymorphic_pseudogene chr8:43159895 chr8:43159898 . . 0 24 hm5C_associated_SNPs_87448 0 0 0 0 2 POTEA chr8:43159842 3'AG 43159842 Downstream 57bp
chr8 43159898 43159898 1 + G A SKCM 43159895 + 43159875 43159915 41 CCAGATGCCAAACAACTCTTCTGGAAATAGCAATCCAGGTA CCAGATGCCAAACAACTCTTCTGAAAATAGCAATCCAGGTA < 41bp 0.712732937682372 0.497522973133433 0.3854789 0.1859369 prediction 0.425465875364743 Functional Loss - POTEA ENSG00000188877 ncRNA_exonic Human polymorphic_pseudogene chr8:43159895 chr8:43159898 . . 0 24 hm5C_associated_SNPs_87448 0 0 0 0 2 POTEA chr8:43159912 5'GT 43159912 Upstream 15bp
chr7 151680175 151680175 1 + C T rs35682935 151680173 + 151680153 151680193 41 TTTCAGACCATGTCCAGTGTCACGAACCTCACGCCACACTA TTTCAGACCATGTCCAGTGTCATGAACCTCACGCCACACTA < 41bp 0.85215038378132 0.639419554363431 0.1007728 0.11727813 prediction 0.425461658835778 Functional Loss - GALNTL5 ENSG00000106648 CDS Human protein_coding chr7:151680173 chr7:151680175 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_87451 0 0 0 0 1 GALNTL5 chr7:151680237 5'GT 151680237 Upstream 63bp
chr3 186572017 186572017 1 + G A OV 186572014 + 186571994 186572034 41 ACATCGGTGAAACCGGAGTACCCGGGGCTGAAGGTCCCCGA ACATCGGTGAAACCGGAGTACCCAGGGCTGAAGGTCCCCGA < 41bp 0.74024047985764 0.52751435111137 0.91684735 0.7898197 prediction 0.425452257492538 Functional Loss - ADIPOQ ENSG00000181092 CDS Human protein_coding chr3:186572014 chr3:186572017 nonsynonymous SNV 0.364 5 24 hm5C_associated_SNPs_87455 0 0 0 0 1 ADIPOQ chr3:186571973 3'AG 186571973 Downstream 45bp
chr19 5667092 5667092 1 + C T SARC 5667090 + 5667070 5667110 41 GCCATGGAGGACCAGAGCGCCACGGCCGGGACTCCCGCGAT GCCATGGAGGACCAGAGCGCCATGGCCGGGACTCCCGCGAT < 41bp 0.844657466293381 0.631931750104643 0.7920711 0.82080126 prediction 0.425451432377476 Functional Loss - SAFB ENSG00000160633 CDS Human protein_coding chr19:5667090 chr19:5667092 synonymous SNV . 0 23 hm5C_associated_SNPs_87456 0 0 1 0 2 SAFB chr19:5667057 3'AG 5667057 Downstream 36bp
chr19 5667092 5667092 1 + C T SARC 5667090 + 5667070 5667110 41 GCCATGGAGGACCAGAGCGCCACGGCCGGGACTCCCGCGAT GCCATGGAGGACCAGAGCGCCATGGCCGGGACTCCCGCGAT < 41bp 0.844657466293381 0.631931750104643 0.7920711 0.82080126 prediction 0.425451432377476 Functional Loss - SAFB ENSG00000160633 CDS Human protein_coding chr19:5667090 chr19:5667092 synonymous SNV . 0 23 hm5C_associated_SNPs_87456 0 0 1 0 2 SAFB chr19:5667175 5'GT 5667175 Upstream 84bp
chr19 16918857 16918857 1 + G A SKCM 16918854 + 16918834 16918874 41 GCCTGTGTGGAGGTCAGCCACAAGGAGCAGCTGGTGGTCAG GCCTGTGTGGAGGTCAGCCACAAAGAGCAGCTGGTGGTCAG < 41bp 0.804359590099096 0.591634749288378 0.81199074 0.38467926 prediction 0.425449681621436 Functional Loss - NWD1 ENSG00000188039 CDS Human protein_coding chr19:16918854 chr19:16918857 synonymous SNV . 0 24 hm5C_associated_SNPs_87459 0 0 0 0 1 NWD1 chr19:16918947 5'GT 16918947 Upstream 91bp
chr16 57789326 57789326 1 + G A UCEC 57789323 + 57789303 57789343 41 TGTCACAGATCCGCAAAGGCCACGACACCATGTGTGTGGTG TGTCACAGATCCGCAAAGGCCACAACACCATGTGTGTGGTG < 41bp 0.796378607089967 0.583654893293975 0.040838778 0.026800096 prediction 0.425447427591984 Functional Loss - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57789323 chr16:57789326 nonsynonymous SNV 0.961 1 24 hm5C_associated_SNPs_87462 0 0 1 0 1 KATNB1 chr16:57789257 3'AG 57789257 Downstream 70bp
chr10 75519464 75519464 1 + G A KICH 75519461 + 75519441 75519481 41 CTTCAGCCCTATGGCCCTCCCCCGACAAGTGCACAGGTGGC CTTCAGCCCTATGGCCCTCCCCCAACAAGTGCACAGGTGGC < 41bp 0.712723031247897 0.470062176262111 0.14335376 0.20907226 prediction 0.425446062495793 Functional Loss - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75519461 chr10:75519464 synonymous SNV . 0 24 hm5C_associated_SNPs_87463 0 0 1 0 2 SEC24C chr10:75519380 3'AG 75519380 Downstream 85bp
chr10 75519464 75519464 1 + G A KICH 75519461 + 75519441 75519481 41 CTTCAGCCCTATGGCCCTCCCCCGACAAGTGCACAGGTGGC CTTCAGCCCTATGGCCCTCCCCCAACAAGTGCACAGGTGGC < 41bp 0.712723031247897 0.470062176262111 0.14335376 0.20907226 prediction 0.425446062495793 Functional Loss - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75519461 chr10:75519464 synonymous SNV . 0 24 hm5C_associated_SNPs_87463 0 0 1 0 2 SEC24C chr10:75519552 5'GT 75519552 Upstream 89bp
chrX 69497581 69497581 1 + G T UCEC 69497577 + 69497557 69497597 41 CTGCTTTAGGTTCACTACCACGGAGAACCCATCTCTGTCAA CTGCTTTAGGTTCACTACCACGGATAACCCATCTCTGTCAA < 41bp 0.714443875920731 0.501721018952438 0.8250043 0.7563611 prediction 0.425445713936585 Functional Loss - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69497577 chrX:69497581 stopgain 0.564 1 25 hm5C_associated_SNPs_87464 0 0 0 0 2 ARR3 chrX:69497566 3'AG 69497566 Downstream 16bp
chrX 69497581 69497581 1 + G T UCEC 69497577 + 69497557 69497597 41 CTGCTTTAGGTTCACTACCACGGAGAACCCATCTCTGTCAA CTGCTTTAGGTTCACTACCACGGATAACCCATCTCTGTCAA < 41bp 0.714443875920731 0.501721018952438 0.8250043 0.7563611 prediction 0.425445713936585 Functional Loss - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69497577 chrX:69497581 stopgain 0.564 1 25 hm5C_associated_SNPs_87464 0 0 0 0 2 ARR3 chrX:69497650 5'GT 69497650 Upstream 70bp
chr13 39612858 39612858 1 + C T COAD 39612856 + 39612836 39612876 41 GCATTCGCGTTTTTGTGGCTCTCCAGTGAGTTGGGTAGTGA GCATTCGCGTTTTTGTGGCTCTTCAGTGAGTTGGGTAGTGA < 41bp 0.712722289923691 0.448079570098096 0.93272924 0.27809685 prediction 0.425444579847382 Functional Loss - NHLRC3 ENSG00000188811 CDS Human protein_coding chr13:39612856 chr13:39612858 nonsynonymous SNV 0.016 0 23 hm5C_associated_SNPs_87465 0 0 1 0 1 NHLRC3 chr13:39612860 5'GT 39612860 Upstream 3bp
chr16 57100495 57100495 1 + C T SKCM 57100492 + 57100472 57100512 41 GTGTCCAGCTGGAATTTCCTCGCCAGGAAGAGAATCCAGAA GTGTCCAGCTGGAATTTCCTCGCTAGGAAGAGAATCCAGAA < 41bp 0.734407988856422 0.521686885752252 0.55937314 0.5502532 prediction 0.425442206208339 Functional Loss - NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57100492 chr16:57100495 stopgain 0.112 0 24 hm5C_associated_SNPs_87466 0 0 0 0 2 NLRC5 chr16:57100446 3'AG 57100446 Downstream 50bp
chr16 57100495 57100495 1 + C T SKCM 57100492 + 57100472 57100512 41 GTGTCCAGCTGGAATTTCCTCGCCAGGAAGAGAATCCAGAA GTGTCCAGCTGGAATTTCCTCGCTAGGAAGAGAATCCAGAA < 41bp 0.734407988856422 0.521686885752252 0.55937314 0.5502532 prediction 0.425442206208339 Functional Loss - NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57100492 chr16:57100495 stopgain 0.112 0 24 hm5C_associated_SNPs_87466 0 0 0 0 2 NLRC5 chr16:57100526 5'GT 57100526 Upstream 32bp
chr20 2582903 2582903 1 + C T STAD 2582900 + 2582880 2582920 41 ACTTTGTGGTTAAGCGATCTCAGCAATTCTCCAAAATGCAG ACTTTGTGGTTAAGCGATCTCAGTAATTCTCCAAAATGCAG < 41bp 0.727268495532269 0.514549011730684 0.005901456 0.014374167 prediction 0.42543896760317 Functional Loss - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2582900 chr20:2582903 stopgain 0.991 0 24 hm5C_associated_SNPs_87468 0 0 0 0 1 TMC2 chr20:2582947 5'GT 2582947 Upstream 45bp
chr9 133911635 133911635 1 + G C KIRC 133911634 + 133911614 133911654 41 CGGTGCCAGCACAACACCACCGGCACAGACTGTGAGCGCTG CGGTGCCAGCACAACACCACCCGCACAGACTGTGAGCGCTG < 41bp 0.71271807175843 0.389744622307953 0.26529437 0.033068776 prediction 0.425436143516859 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133911634 chr9:133911635 nonsynonymous SNV 0.048 5 22 hm5C_associated_SNPs_87469 0 0 1 0 2 LAMC3 chr9:133911553 3'AG 133911553 Downstream 83bp
chr9 133911635 133911635 1 + G C KIRC 133911634 + 133911614 133911654 41 CGGTGCCAGCACAACACCACCGGCACAGACTGTGAGCGCTG CGGTGCCAGCACAACACCACCCGCACAGACTGTGAGCGCTG < 41bp 0.71271807175843 0.389744622307953 0.26529437 0.033068776 prediction 0.425436143516859 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133911634 chr9:133911635 nonsynonymous SNV 0.048 5 22 hm5C_associated_SNPs_87469 0 0 1 0 2 LAMC3 chr9:133911719 5'GT 133911719 Upstream 85bp
chr10 51580916 51580916 1 + G A BLCA 51580913 + 51580893 51580933 41 TCAATTGTCTTACTCATCAACTGGAGTGTACCCAAAACAAA TCAATTGTCTTACTCATCAACTGAAGTGTACCCAAAACAAA < 41bp 0.712717358900006 0.487311678103682 0.5516404 0.40404192 prediction 0.425434717800012 Functional Loss - NCOA4 ENSG00000138293 CDS Human other chr10:51580913 chr10:51580916 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_87470 0 0 1 0 2 NCOA4 chr10:51580880 3'AG 51580880 Downstream 37bp
chr10 51580916 51580916 1 + G A BLCA 51580913 + 51580893 51580933 41 TCAATTGTCTTACTCATCAACTGGAGTGTACCCAAAACAAA TCAATTGTCTTACTCATCAACTGAAGTGTACCCAAAACAAA < 41bp 0.712717358900006 0.487311678103682 0.5516404 0.40404192 prediction 0.425434717800012 Functional Loss - NCOA4 ENSG00000138293 CDS Human other chr10:51580913 chr10:51580916 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_87470 0 0 1 0 2 NCOA4 chr10:51580968 5'GT 51580968 Upstream 53bp
chr1 1425970 1425970 1 + C T COAD 1425967 + 1425947 1425987 41 CTGAAGCTGGCCCAGTTTGACTACGGGAGGAAGTGCTCGGA CTGAAGCTGGCCCAGTTTGACTATGGGAGGAAGTGCTCGGA < 41bp 0.718771639167527 0.506057199272472 0.31384408 0.27201203 prediction 0.425428879790112 Functional Loss - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1425967 chr1:1425970 synonymous SNV . 0 24 hm5C_associated_SNPs_87471 0 0 0 0 2 ATAD3B chr1:1425943 3'AG 1425943 Downstream 28bp
chr1 1425970 1425970 1 + C T COAD 1425967 + 1425947 1425987 41 CTGAAGCTGGCCCAGTTTGACTACGGGAGGAAGTGCTCGGA CTGAAGCTGGCCCAGTTTGACTATGGGAGGAAGTGCTCGGA < 41bp 0.718771639167527 0.506057199272472 0.31384408 0.27201203 prediction 0.425428879790112 Functional Loss - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1425967 chr1:1425970 synonymous SNV . 0 24 hm5C_associated_SNPs_87471 0 0 0 0 2 ATAD3B chr1:1426051 5'GT 1426051 Upstream 82bp
chr1 150469292 150469292 1 + G A BRCA 150469289 + 150469269 150469309 41 GCTATTCCTGACCCCAGGAACAGGAGCTCTTCTTCTTCCAT GCTATTCCTGACCCCAGGAACAGAAGCTCTTCTTCTTCCAT < 41bp 0.794913860838324 0.582201546428797 0.89959466 0.87517405 prediction 0.425424628819053 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150469289 chr1:150469292 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_87473 0 0 1 0 1 TARS2 chr1:150469286 3'AG 150469286 Downstream 7bp
chrX 36117964 36117964 1 + G A UCEC 36117961 + 36117941 36117981 41 AATTTGAAGCCTGGAGTAAACGGGCATGGACAGATGTATTT AATTTGAAGCCTGGAGTAAACGGACATGGACAGATGTATTT < 41bp 0.71271184431592 0.488536996606916 0.34573263 0.2114442 prediction 0.425423688631841 Functional Loss - CFAP47 ENSG00000176034 CDS Human other chrX:36117961 chrX:36117964 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_87474 0 0 0 0 2 CFAP47 chrX:36117868 3'AG 36117868 Downstream 97bp
chrX 36117964 36117964 1 + G A UCEC 36117961 + 36117941 36117981 41 AATTTGAAGCCTGGAGTAAACGGGCATGGACAGATGTATTT AATTTGAAGCCTGGAGTAAACGGACATGGACAGATGTATTT < 41bp 0.71271184431592 0.488536996606916 0.34573263 0.2114442 prediction 0.425423688631841 Functional Loss - CFAP47 ENSG00000176034 CDS Human other chrX:36117961 chrX:36117964 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_87474 0 0 0 0 2 CFAP47 chrX:36117996 5'GT 36117996 Upstream 33bp
chr5 235364 235364 1 + C T rs35277230 235361 + 235341 235381 41 ATTTCAGAGACAGCCATGATCTTCGCTGGCGTGGACGTCAC ATTTCAGAGACAGCCATGATCTTTGCTGGCGTGGACGTCAC < 41bp 0.764596842382393 0.551886088375552 0.3709147 0.28820065 prediction 0.425421508013683 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:235361 chr5:235364 synonymous SNV . 0 24 hm5C_associated_SNPs_87477 7 0 1 0 1 SDHA chr5:235454 5'GT 235454 Upstream 91bp
chr7 44806116 44806116 1 + C T BLCA 44806113 + 44806093 44806133 41 CCCCTCCAGGTCCCCAGCTGCACCATTCAAACCCTCCCCCA CCCCTCCAGGTCCCCAGCTGCACTATTCAAACCCTCCCCCA < 41bp 0.725660792774817 0.512950095448584 0.06467283 0.09198651 prediction 0.425421394652467 Functional Loss - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806113 chr7:44806116 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_87478 0 0 1 0 1 ZMIZ2 chr7:44806020 3'AG 44806020 Downstream 97bp
chr1 3624148 3624148 1 + G A UCEC 3624145 + 3624125 3624165 41 CTGCTGAGCAGCACCATGGACCAGATGAGCAGCCGCGCGGC CTGCTGAGCAGCACCATGGACCAAATGAGCAGCCGCGCGGC < 41bp 0.764471561732173 0.551761951837067 0.7978571 0.34187838 prediction 0.425419219790212 Functional Loss - TP73 ENSG00000078900 CDS Human protein_coding chr1:3624145 chr1:3624148 synonymous SNV . 0 24 hm5C_associated_SNPs_87479 0 0 1 0 1 TP73 chr1:3624113 3'AG 3624113 Downstream 36bp
chr19 42312933 42312933 1 + G A rs3752172 42312930 + 42312910 42312950 41 GTCGGAGTGGCGCTGGTGGCCGCGCTGGTGTGTTTCCTGCT GTCGGAGTGGCGCTGGTGGCCGCACTGGTGTGTTTCCTGCT < 41bp 0.712708498881475 0.456550736174116 0.39893618 0.42441803 prediction 0.425416997762949 Functional Loss - CEACAM3 ENSG00000170956 CDS Human protein_coding chr19:42312930 chr19:42312933 synonymous SNV . 0 24 hm5C_associated_SNPs_87480 0 0 0 2 3 CEACAM3 chr19:42312851 3'AG 42312851 Downstream 83bp
chr19 42312933 42312933 1 + G A rs3752172 42312930 + 42312910 42312950 41 GTCGGAGTGGCGCTGGTGGCCGCGCTGGTGTGTTTCCTGCT GTCGGAGTGGCGCTGGTGGCCGCACTGGTGTGTTTCCTGCT < 41bp 0.712708498881475 0.456550736174116 0.39893618 0.42441803 prediction 0.425416997762949 Functional Loss - CEACAM3 ENSG00000170956 CDS Human protein_coding chr19:42312930 chr19:42312933 synonymous SNV . 0 24 hm5C_associated_SNPs_87480 0 0 0 2 3 CEACAM3 chr19:42312854 3'AG 42312854 Downstream 80bp
chr19 42312933 42312933 1 + G A rs3752172 42312930 + 42312910 42312950 41 GTCGGAGTGGCGCTGGTGGCCGCGCTGGTGTGTTTCCTGCT GTCGGAGTGGCGCTGGTGGCCGCACTGGTGTGTTTCCTGCT < 41bp 0.712708498881475 0.456550736174116 0.39893618 0.42441803 prediction 0.425416997762949 Functional Loss - CEACAM3 ENSG00000170956 CDS Human protein_coding chr19:42312930 chr19:42312933 synonymous SNV . 0 24 hm5C_associated_SNPs_87480 0 0 0 2 3 CEACAM3 chr19:42312968 5'GT 42312968 Upstream 36bp
chr17 60501613 60501613 1 + G A SKCM 60501610 + 60501590 60501630 41 GAGTGGTCGGAAGAGCAAGCCGCGGCGGCGGAGAGAAAAGT GAGTGGTCGGAAGAGCAAGCCGCAGCGGCGGAGAGAAAAGT < 41bp 0.722406811048459 0.509698425913125 0.8775327 0.5456671 prediction 0.425416770270669 Functional Loss - METTL2A ENSG00000087995 CDS Human protein_coding chr17:60501610 chr17:60501613 synonymous SNV . 0 24 hm5C_associated_SNPs_87481 0 0 0 0 2 METTL2A chr17:60501580 3'AG 60501580 Downstream 34bp
chr17 60501613 60501613 1 + G A SKCM 60501610 + 60501590 60501630 41 GAGTGGTCGGAAGAGCAAGCCGCGGCGGCGGAGAGAAAAGT GAGTGGTCGGAAGAGCAAGCCGCAGCGGCGGAGAGAAAAGT < 41bp 0.722406811048459 0.509698425913125 0.8775327 0.5456671 prediction 0.425416770270669 Functional Loss - METTL2A ENSG00000087995 CDS Human protein_coding chr17:60501610 chr17:60501613 synonymous SNV . 0 24 hm5C_associated_SNPs_87481 0 0 0 0 2 METTL2A chr17:60501671 5'GT 60501671 Upstream 59bp
chr1 16380141 16380141 1 + C T HNSC 16380138 + 16380118 16380158 41 GCCCCTCTGCCTGCAGTTCCCACCGCGTGAGGGTGGAGCAC GCCCCTCTGCCTGCAGTTCCCACTGCGTGAGGGTGGAGCAC < 41bp 0.728811771239487 0.516104274331524 0.28273633 0.19269419 prediction 0.425414993815925 Functional Loss - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16380138 chr1:16380141 nonsynonymous SNV 0.024 1 24 hm5C_associated_SNPs_87482 0 0 0 0 1 CLCNKB chr1:16380134 3'AG 16380134 Downstream 8bp
chr20 56929289 56929289 1 + C T UCEC 56929287 + 56929267 56929307 41 GTAGAGACCAGCGCAAAAAACGCGATAAACATAAATGAACT GTAGAGACCAGCGCAAAAAACGTGATAAACATAAATGAACT < 41bp 0.857550440299308 0.64484661279995 0.28781897 0.25387913 prediction 0.425407654998715 Functional Loss - RAB22A ENSG00000124209 CDS Human protein_coding chr20:56929287 chr20:56929289 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_87485 0 0 0 0 2 RAB22A chr20:56929212 3'AG 56929212 Downstream 78bp
chr20 56929289 56929289 1 + C T UCEC 56929287 + 56929267 56929307 41 GTAGAGACCAGCGCAAAAAACGCGATAAACATAAATGAACT GTAGAGACCAGCGCAAAAAACGTGATAAACATAAATGAACT < 41bp 0.857550440299308 0.64484661279995 0.28781897 0.25387913 prediction 0.425407654998715 Functional Loss - RAB22A ENSG00000124209 CDS Human protein_coding chr20:56929287 chr20:56929289 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_87485 0 0 0 0 2 RAB22A chr20:56929321 5'GT 56929321 Upstream 33bp
chr8 21957283 21957283 1 + C T LGG 21957280 + 21957260 21957300 41 GCTGCGCCAGCTTCGCTCCCCTGCGCTGCTGCGGGAGGCCG GCTGCGCCAGCTTCGCTCCCCTGTGCTGCTGCGGGAGGCCG < 41bp 0.749448060281059 0.536745997880698 0.10763988 0.15564322 prediction 0.425404124800721 Functional Loss - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21957280 chr8:21957283 nonsynonymous SNV 0.209 1 24 hm5C_associated_SNPs_87487 0 0 0 0 1 FAM160B2 chr8:21957215 3'AG 21957215 Downstream 69bp
chr3 183823150 183823150 1 + G A UCEC 183823147 + 183823127 183823167 41 CCCATGGAGAATGGGAGCTCCTGGGCCTCAGCAAGGCCACC CCCATGGAGAATGGGAGCTCCTGAGCCTCAGCAAGGCCACC < 41bp 0.712694524095847 0.463079955256167 0.7269015 0.504817 prediction 0.425389048191695 Functional Loss - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183823147 chr3:183823150 nonsynonymous SNV 0.976 0 24 hm5C_associated_SNPs_87489 0 0 0 0 2 HTR3E chr3:183823055 3'AG 183823055 Downstream 96bp
chr3 183823150 183823150 1 + G A UCEC 183823147 + 183823127 183823167 41 CCCATGGAGAATGGGAGCTCCTGGGCCTCAGCAAGGCCACC CCCATGGAGAATGGGAGCTCCTGAGCCTCAGCAAGGCCACC < 41bp 0.712694524095847 0.463079955256167 0.7269015 0.504817 prediction 0.425389048191695 Functional Loss - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183823147 chr3:183823150 nonsynonymous SNV 0.976 0 24 hm5C_associated_SNPs_87489 0 0 0 0 2 HTR3E chr3:183823215 5'GT 183823215 Upstream 66bp
chr12 104476593 104476593 1 + G A COAD 104476590 + 104476570 104476610 41 CTGTGCTGTTGCAATCGGCACTCGATTGTATTTTTGGAGTG CTGTGCTGTTGCAATCGGCACTCAATTGTATTTTTGGAGTG < 41bp 0.798952176459468 0.586259967539034 0.5680544 0.19594845 prediction 0.425384417840868 Functional Loss - HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104476590 chr12:104476593 nonsynonymous SNV 0.979 4 24 hm5C_associated_SNPs_87491 0 0 0 0 1 HCFC2 chr12:104476679 5'GT 104476679 Upstream 87bp
chr7 150710900 150710900 1 - G A COAD 150710902 - 150710882 150710922 41 GTTGGTTGCCATGGTAACATCGCCGCAGACAAACATGTGGC GTTGGTTGCCATGGTAACATCGTCGCAGACAAACATGTGGC < 41bp 0.83773638492225 0.625048978949382 0.2424216 0.20306954 prediction 0.425374811945736 Functional Loss - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150710902 chr7:150710900 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_87492 0 0 0 0 1 NOS3 chr7:150710818 5'GT 150710818 Upstream 83bp
chr20 30610516 30610516 1 + C T COAD 30610513 + 30610493 30610533 41 TGTCAGGTCTTCCAGATCATCTACGGGGACCAGAGTATTGA TGTCAGGTCTTCCAGATCATCTATGGGGACCAGAGTATTGA < 41bp 0.712684018356681 0.48914643393219 0.26261193 0.2390796 prediction 0.425368036713361 Functional Loss - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30610513 chr20:30610516 synonymous SNV . 0 24 hm5C_associated_SNPs_87494 0 0 0 0 2 CCM2L chr20:30610463 3'AG 30610463 Downstream 54bp
chr20 30610516 30610516 1 + C T COAD 30610513 + 30610493 30610533 41 TGTCAGGTCTTCCAGATCATCTACGGGGACCAGAGTATTGA TGTCAGGTCTTCCAGATCATCTATGGGGACCAGAGTATTGA < 41bp 0.712684018356681 0.48914643393219 0.26261193 0.2390796 prediction 0.425368036713361 Functional Loss - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30610513 chr20:30610516 synonymous SNV . 0 24 hm5C_associated_SNPs_87494 0 0 0 0 2 CCM2L chr20:30610598 5'GT 30610598 Upstream 83bp
chr12 93147902 93147902 1 + G A LUAD 93147899 + 93147879 93147919 41 ATGAACAATGCAGACGGCTCCACGTGCCAGAGCTGCTAGTG ATGAACAATGCAGACGGCTCCACATGCCAGAGCTGCTAGTG < 41bp 0.787887383265396 0.575208135475276 0.78957367 0.4095564 prediction 0.425358495580239 Functional Loss - PLEKHG7 ENSG00000187510 CDS Human protein_coding chr12:93147899 chr12:93147902 nonsynonymous SNV 0.007 2 24 hm5C_associated_SNPs_87497 0 0 0 0 1 PLEKHG7 chr12:93147866 3'AG 93147866 Downstream 37bp
chr3 180686016 180686016 1 + G A LUSC 180686013 + 180685993 180686033 41 GGGTCGAGGTCGTGGTGGACCACGTGGTGGCAAATCCTCCA GGGTCGAGGTCGTGGTGGACCACATGGTGGCAAATCCTCCA < 41bp 0.772468807882873 0.55979428259778 0.34856537 0.30683553 prediction 0.425349050570187 Functional Loss - FXR1 ENSG00000114416 CDS Human protein_coding chr3:180686013 chr3:180686016 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_87499 0 0 1 0 1 FXR1 chr3:180686042 5'GT 180686042 Upstream 27bp
chr17 38122561 38122561 1 + G A COAD 38122558 + 38122538 38122578 41 CTTTAAGAATATGCTGGACACCCGAGTGGAGGGAGATGTGG CTTTAAGAATATGCTGGACACCCAAGTGGAGGGAGATGTGG < 41bp 0.712672727979689 0.47660753136331 0.07362473 0.020380288 prediction 0.425345455959378 Functional Loss - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38122558 chr17:38122561 nonsynonymous SNV 0.991 0 24 hm5C_associated_SNPs_87500 0 0 0 0 1 GSDMA chr17:38122513 3'AG 38122513 Downstream 49bp
chr17 21205521 21205521 1 + G T BRCA 21205518 + 21205498 21205538 41 ACAAGTTCTACCGGAAGGTGCTGGATAAAAACATGACAATT ACAAGTTCTACCGGAAGGTGCTGTATAAAAACATGACAATT < 41bp 0.712667700873988 0.31517437953205 0.2895964 0.16221699 prediction 0.425335401747977 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21205518 chr17:21205521 nonsynonymous SNV 0.989 1 24 hm5C_associated_SNPs_87502 0 0 1 0 2 MAP2K3 chr17:21205455 3'AG 21205455 Downstream 67bp
chr17 21205521 21205521 1 + G T BRCA 21205518 + 21205498 21205538 41 ACAAGTTCTACCGGAAGGTGCTGGATAAAAACATGACAATT ACAAGTTCTACCGGAAGGTGCTGTATAAAAACATGACAATT < 41bp 0.712667700873988 0.31517437953205 0.2895964 0.16221699 prediction 0.425335401747977 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21205518 chr17:21205521 nonsynonymous SNV 0.989 1 24 hm5C_associated_SNPs_87502 0 0 1 0 2 MAP2K3 chr17:21205571 5'GT 21205571 Upstream 51bp
chr17 21205520 21205520 1 + G T UCEC 21205518 + 21205498 21205538 41 ACAAGTTCTACCGGAAGGTGCTGGATAAAAACATGACAATT ACAAGTTCTACCGGAAGGTGCTTGATAAAAACATGACAATT < 41bp 0.712667700873988 0.369652095202136 0.2895964 0.069805235 prediction 0.425335401747977 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21205518 chr17:21205520 synonymous SNV . 0 23 hm5C_associated_SNPs_87503 0 0 1 0 2 MAP2K3 chr17:21205455 3'AG 21205455 Downstream 66bp
chr17 21205520 21205520 1 + G T UCEC 21205518 + 21205498 21205538 41 ACAAGTTCTACCGGAAGGTGCTGGATAAAAACATGACAATT ACAAGTTCTACCGGAAGGTGCTTGATAAAAACATGACAATT < 41bp 0.712667700873988 0.369652095202136 0.2895964 0.069805235 prediction 0.425335401747977 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21205518 chr17:21205520 synonymous SNV . 0 23 hm5C_associated_SNPs_87503 0 0 1 0 2 MAP2K3 chr17:21205571 5'GT 21205571 Upstream 52bp
chr12 4714247 4714247 1 + A T rs200900846 4714243 + 4714223 4714263 41 GAGGTGGAGCAGCTGGCCTGCATCATGGAGGTACGCGGAGG GAGGTGGAGCAGCTGGCCTGCATCTTGGAGGTACGCGGAGG < 41bp 0.712667153976555 0.377999710645873 0.3247295 0.3039164 prediction 0.425334307953109 Functional Loss - DYRK4 ENSG00000010219;ENSG00000272921 CDS Human other chr12:4714243 chr12:4714247 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_87505 0 0 1 0 1 DYRK4 chr12:4714252 5'GT 4714252 Upstream 6bp
chr3 5246813 5246813 1 + G T SARC 5246810 + 5246790 5246830 41 AAGCAGAGTGGCCTGGGTGCCGGGCTGGACTCCTTCTATGA AAGCAGAGTGGCCTGGGTGCCGGTCTGGACTCCTTCTATGA < 41bp 0.712666412882647 0.314174867054694 0.7843548 0.08857423 prediction 0.425332825765294 Functional Loss - EDEM1 ENSG00000134109 CDS Human protein_coding chr3:5246810 chr3:5246813 synonymous SNV . 0 24 hm5C_associated_SNPs_87506 0 0 1 0 1 EDEM1 chr3:5246752 3'AG 5246752 Downstream 62bp
chr19 36037919 36037919 1 + C T UCEC 36037916 + 36037896 36037936 41 TACATCCAGATGAGCATAGACTCCAACATCAGTCTGGTAGG TACATCCAGATGAGCATAGACTCTAACATCAGTCTGGTAGG < 41bp 0.712662827072834 0.483151650452762 0.9559413 0.9238602 prediction 0.425325654145668 Functional Loss - TMEM147 ENSG00000105677 CDS Human protein_coding chr19:36037916 chr19:36037919 synonymous SNV . 0 24 hm5C_associated_SNPs_87509 0 0 1 0 2 TMEM147 chr19:36037847 3'AG 36037847 Downstream 73bp
chr19 36037919 36037919 1 + C T UCEC 36037916 + 36037896 36037936 41 TACATCCAGATGAGCATAGACTCCAACATCAGTCTGGTAGG TACATCCAGATGAGCATAGACTCTAACATCAGTCTGGTAGG < 41bp 0.712662827072834 0.483151650452762 0.9559413 0.9238602 prediction 0.425325654145668 Functional Loss - TMEM147 ENSG00000105677 CDS Human protein_coding chr19:36037916 chr19:36037919 synonymous SNV . 0 24 hm5C_associated_SNPs_87509 0 0 1 0 2 TMEM147 chr19:36037931 5'GT 36037931 Upstream 13bp
chr1 17575683 17575683 1 + G A PCPG 17575680 + 17575660 17575700 41 TCCCTGGAGCATCCCACCAGCGCGGTGTGTGTGGCTGGCGT TCCCTGGAGCATCCCACCAGCGCAGTGTGTGTGGCTGGCGT < 41bp 0.796867671726733 0.584215546488447 0.7636256 0.3789702 prediction 0.425304250476572 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17575680 chr1:17575683 synonymous SNV . 0 24 hm5C_associated_SNPs_87515 0 0 0 0 1 PADI3 chr1:17575724 5'GT 17575724 Upstream 42bp
chr4 25673303 25673303 1 + G A SKCM 25673300 + 25673280 25673320 41 TGGACGGATGGCATCCAAAACTGGACCATGAAGAATGTGAC TGGACGGATGGCATCCAAAACTGAACCATGAAGAATGTGAC < 41bp 0.784885442536067 0.572235150805291 0.15471622 0.23275498 prediction 0.425300583461551 Functional Loss - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25673300 chr4:25673303 stopgain 0.159 1 24 hm5C_associated_SNPs_87518 0 0 0 0 2 SLC34A2 chr4:25673223 3'AG 25673223 Downstream 81bp
chr4 25673303 25673303 1 + G A SKCM 25673300 + 25673280 25673320 41 TGGACGGATGGCATCCAAAACTGGACCATGAAGAATGTGAC TGGACGGATGGCATCCAAAACTGAACCATGAAGAATGTGAC < 41bp 0.784885442536067 0.572235150805291 0.15471622 0.23275498 prediction 0.425300583461551 Functional Loss - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25673300 chr4:25673303 stopgain 0.159 1 24 hm5C_associated_SNPs_87518 0 0 0 0 2 SLC34A2 chr4:25673343 5'GT 25673343 Upstream 41bp
chr9 136507569 136507569 1 + C T HNSC 136507567 + 136507547 136507587 41 GGAGCTTCCAAAGGGCTTCTCTCGGCACCACATTATCAAGG GGAGCTTCCAAAGGGCTTCTCTTGGCACCACATTATCAAGG < 41bp 0.712648860104258 0.448863239053676 0.04553932 0.08342546 prediction 0.425297720208516 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136507567 chr9:136507569 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_87519 0 0 0 0 1 DBH chr9:136507586 5'GT 136507586 Upstream 18bp
chr19 17994720 17994720 1 + C T HNSC 17994718 + 17994698 17994738 41 CTGTGGGTGGCCTTGGGCGCCACGCTGTACCCACCCAGCGA CTGTGGGTGGCCTTGGGCGCCATGCTGTACCCACCCAGCGA < 41bp 0.712648465065347 0.446605436799212 0.026121259 0.10596901 prediction 0.425296930130693 Functional Loss - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17994718 chr19:17994720 nonsynonymous SNV 0.972 2 23 hm5C_associated_SNPs_87521 0 0 0 0 1 SLC5A5 chr19:17994659 3'AG 17994659 Downstream 62bp
chr11 63670173 63670173 1 + G T KIRC 63670171 + 63670151 63670191 41 AGGAGGACCGGGAGTCAGGGCGGAAAGCCAGCAGCACAGCC AGGAGGACCGGGAGTCAGGGCGTAAAGCCAGCAGCACAGCC < 41bp 0.712647404661093 0.359106892015864 0.73666537 0.5901246 prediction 0.425294809322187 Functional Loss - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63670171 chr11:63670173 synonymous SNV . 0 23 hm5C_associated_SNPs_87522 0 0 1 0 2 MARK2 chr11:63670076 3'AG 63670076 Downstream 98bp
chr11 63670173 63670173 1 + G T KIRC 63670171 + 63670151 63670191 41 AGGAGGACCGGGAGTCAGGGCGGAAAGCCAGCAGCACAGCC AGGAGGACCGGGAGTCAGGGCGTAAAGCCAGCAGCACAGCC < 41bp 0.712647404661093 0.359106892015864 0.73666537 0.5901246 prediction 0.425294809322187 Functional Loss - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63670171 chr11:63670173 synonymous SNV . 0 23 hm5C_associated_SNPs_87522 0 0 1 0 2 MARK2 chr11:63670254 5'GT 63670254 Upstream 82bp
chr6 146480637 146480637 1 + G A rs7760248 146480634 + 146480614 146480654 41 CCGAGAGAGGCTTCCCAAGGCTAGAGTGGTGGTCTGCTTCT CCGAGAGAGGCTTCCCAAGGCTAAAGTGGTGGTCTGCTTCT < 41bp 0.779427982515196 0.566781068566451 0.25979 0.13873452 prediction 0.425293827897492 Functional Loss - GRM1 ENSG00000152822 CDS Human protein_coding chr6:146480634 chr6:146480637 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_87523 0 0 0 0 1 GRM1 chr6:146480733 5'GT 146480733 Upstream 97bp
chr16 20818356 20818356 1 + G A BLCA 20818353 + 20818333 20818373 41 CAGGCCCCAAATAAGCTGGTCGGGGCAGCTGAGGCGATGAA CAGGCCCCAAATAAGCTGGTCGGAGCAGCTGAGGCGATGAA < 41bp 0.712646875538621 0.458104392798498 0.7918809 0.68944657 prediction 0.425293751077243 Functional Loss - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20818353 chr16:20818356 synonymous SNV . 0 24 hm5C_associated_SNPs_87524 0 0 0 0 2 REXO5 chr16:20818274 3'AG 20818274 Downstream 83bp
chr16 20818356 20818356 1 + G A BLCA 20818353 + 20818333 20818373 41 CAGGCCCCAAATAAGCTGGTCGGGGCAGCTGAGGCGATGAA CAGGCCCCAAATAAGCTGGTCGGAGCAGCTGAGGCGATGAA < 41bp 0.712646875538621 0.458104392798498 0.7918809 0.68944657 prediction 0.425293751077243 Functional Loss - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20818353 chr16:20818356 synonymous SNV . 0 24 hm5C_associated_SNPs_87524 0 0 0 0 2 REXO5 chr16:20818413 5'GT 20818413 Upstream 58bp
chrX 69247754 69247754 1 + G T UCEC 69247752 + 69247732 69247772 41 CAATGGCCCTCCAGGACCCCCAGGACCTCCAGGACCCCAGG CAATGGCCCTCCAGGACCCCCATGACCTCCAGGACCCCAGG < 41bp 0.712645135847002 0.391025725939253 0.3816034 0.059609056 prediction 0.425290271694005 Functional Loss - EDA ENSG00000158813 CDS Human protein_coding chrX:69247752 chrX:69247754 stopgain 1.000 1 23 hm5C_associated_SNPs_87525 0 0 0 0 1 EDA chrX:69247707 3'AG 69247707 Downstream 48bp
chr1 36550617 36550617 1 + G C BLCA 36550613 + 36550593 36550633 41 TATCCACCAATGCCCAGCTGCAGCGAGATGCTTCCCATCAG TATCCACCAATGCCCAGCTGCAGCCAGATGCTTCCCATCAG < 41bp 0.712643895915015 0.428564549130399 0.37435094 0.116133034 prediction 0.42528779183003 Functional Loss - TEKT2 ENSG00000092850 CDS Human protein_coding chr1:36550613 chr1:36550617 nonsynonymous SNV 0.971 4 25 hm5C_associated_SNPs_87526 0 0 0 0 1 TEKT2 chr1:36550678 5'GT 36550678 Upstream 62bp
chr12 109935699 109935699 1 + G A BLCA 109935696 + 109935676 109935716 41 ACATCATGTCTGTGCCTGCTCTGGTGACTCATCTCAGCACA ACATCATGTCTGTGCCTGCTCTGATGACTCATCTCAGCACA < 41bp 0.807935326664869 0.595292112240894 0.17123497 0.03644824 prediction 0.42528642884795 Functional Loss - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109935696 chr12:109935699 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_87528 0 0 1 1 2 UBE3B chr12:109935623 3'AG 109935623 Downstream 77bp
chr12 109935699 109935699 1 + G A BLCA 109935696 + 109935676 109935716 41 ACATCATGTCTGTGCCTGCTCTGGTGACTCATCTCAGCACA ACATCATGTCTGTGCCTGCTCTGATGACTCATCTCAGCACA < 41bp 0.807935326664869 0.595292112240894 0.17123497 0.03644824 prediction 0.42528642884795 Functional Loss - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109935696 chr12:109935699 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_87528 0 0 1 1 2 UBE3B chr12:109935728 5'GT 109935728 Upstream 30bp
chr3 48508122 48508122 1 + G A STAD 48508119 + 48508099 48508139 41 CTTTTTCGACATGGAGGCCACTGGCTTGCCCTTCTCCCAGC CTTTTTCGACATGGAGGCCACTGACTTGCCCTTCTCCCAGC < 41bp 0.813644623674714 0.601001615155122 0.22247002 0.038047254 prediction 0.425286017039184 Functional Loss - TREX1 ENSG00000213689 CDS Human protein_coding chr3:48508119 chr3:48508122 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_87529 0 0 1 0 2 TREX1 chr3:48508029 3'AG 48508029 Downstream 94bp
chr3 48508122 48508122 1 + G A STAD 48508119 + 48508099 48508139 41 CTTTTTCGACATGGAGGCCACTGGCTTGCCCTTCTCCCAGC CTTTTTCGACATGGAGGCCACTGACTTGCCCTTCTCCCAGC < 41bp 0.813644623674714 0.601001615155122 0.22247002 0.038047254 prediction 0.425286017039184 Functional Loss - TREX1 ENSG00000213689 CDS Human protein_coding chr3:48508119 chr3:48508122 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_87529 0 0 1 0 2 TREX1 chr3:48508067 3'AG 48508067 Downstream 56bp
chr5 633964 633964 1 + T C UCEC 633963 + 633943 633983 41 ATGCGGATGACGAGGCAGTCCTGAACCTCATTGCAGAGTGC ATGCGGATGACGAGGCAGTCCCGAACCTCATTGCAGAGTGC < 41bp 0.712634261356894 0.459747735070558 0.1971119 0.18266234 prediction 0.425268522713788 Functional Loss - CEP72 ENSG00000112877 CDS Human protein_coding chr5:633963 chr5:633964 nonsynonymous SNV 0.983 3 22 hm5C_associated_SNPs_87534 0 0 1 0 2 CEP72 chr5:633884 3'AG 633884 Downstream 81bp
chr5 633964 633964 1 + T C UCEC 633963 + 633943 633983 41 ATGCGGATGACGAGGCAGTCCTGAACCTCATTGCAGAGTGC ATGCGGATGACGAGGCAGTCCCGAACCTCATTGCAGAGTGC < 41bp 0.712634261356894 0.459747735070558 0.1971119 0.18266234 prediction 0.425268522713788 Functional Loss - CEP72 ENSG00000112877 CDS Human protein_coding chr5:633963 chr5:633964 nonsynonymous SNV 0.983 3 22 hm5C_associated_SNPs_87534 0 0 1 0 2 CEP72 chr5:634062 5'GT 634062 Upstream 99bp
chr7 139715531 139715531 1 + G A rs199422117 139715528 + 139715508 139715548 41 TGGTGTTTCCCTCAGATTCACACGGGAGGCAGCTCAGGACT TGGTGTTTCCCTCAGATTCACACAGGAGGCAGCTCAGGACT < 41bp 0.81711883605073 0.604484822299929 0.70359194 0.3157196 prediction 0.425268027501601 Functional Loss - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139715528 chr7:139715531 nonsynonymous SNV 0.725 4 24 hm5C_associated_SNPs_87535 1 0 0 0 1 TBXAS1 chr7:139715523 3'AG 139715523 Downstream 9bp
chr6 117861920 117861920 1 + G T UCEC 117861917 + 117861897 117861937 41 AGATATGTGCGGGTTGTCCCCCAGACATGGCACCAGAGGAT AGATATGTGCGGGTTGTCCCCCATACATGGCACCAGAGGAT < 41bp 0.712633695297637 0.310719585668317 0.028793216 0.020431876 prediction 0.425267390595274 Functional Loss - DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117861917 chr6:117861920 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_87536 0 0 1 0 2 DCBLD1 chr6:117861831 3'AG 117861831 Downstream 90bp
chr6 117861920 117861920 1 + G T UCEC 117861917 + 117861897 117861937 41 AGATATGTGCGGGTTGTCCCCCAGACATGGCACCAGAGGAT AGATATGTGCGGGTTGTCCCCCATACATGGCACCAGAGGAT < 41bp 0.712633695297637 0.310719585668317 0.028793216 0.020431876 prediction 0.425267390595274 Functional Loss - DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117861917 chr6:117861920 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_87536 0 0 1 0 2 DCBLD1 chr6:117861978 5'GT 117861978 Upstream 59bp
chr6 26370758 26370758 1 + C T STAD 26370755 + 26370735 26370775 41 TCTGTGATCATGAGAGGCGGCTCCGGGGAGGGTGTATCCTG TCTGTGATCATGAGAGGCGGCTCTGGGGAGGGTGTATCCTG < 41bp 0.75950279018613 0.54687295554747 0.5478201 0.29693425 prediction 0.425259669277321 Functional Loss - BTN3A2 ENSG00000186470 CDS Human protein_coding chr6:26370755 chr6:26370758 synonymous SNV . 0 24 hm5C_associated_SNPs_87541 0 0 1 0 1 BTN3A2 chr6:26370831 5'GT 26370831 Upstream 74bp
chr19 50905726 50905726 1 + G A UCEC 50905723 + 50905703 50905743 41 CCCTCCAGGTTCATGGTGGACACGGACATCGTCGGCTGCAA CCCTCCAGGTTCATGGTGGACACAGACATCGTCGGCTGCAA < 41bp 0.801837013943032 0.589207726600036 0.3847888 0.31700075 prediction 0.425258574685992 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905723 chr19:50905726 synonymous SNV . 0 24 hm5C_associated_SNPs_87542 0 0 1 0 2 POLD1 chr19:50905711 3'AG 50905711 Downstream 16bp
chr19 50905726 50905726 1 + G A UCEC 50905723 + 50905703 50905743 41 CCCTCCAGGTTCATGGTGGACACGGACATCGTCGGCTGCAA CCCTCCAGGTTCATGGTGGACACAGACATCGTCGGCTGCAA < 41bp 0.801837013943032 0.589207726600036 0.3847888 0.31700075 prediction 0.425258574685992 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905723 chr19:50905726 synonymous SNV . 0 24 hm5C_associated_SNPs_87542 0 0 1 0 2 POLD1 chr19:50905792 5'GT 50905792 Upstream 67bp
chr10 76973799 76973799 1 + G A BLCA 76973796 + 76973776 76973816 41 AAGGTTTTGGGTTGGTGAAACTGGATGTGAAAACAAAGTCT AAGGTTTTGGGTTGGTGAAACTGAATGTGAAAACAAAGTCT < 41bp 0.712629221675993 0.469712147409643 0.42379457 0.32548457 prediction 0.425258443351986 Functional Loss - VDAC2 ENSG00000165637 CDS Human protein_coding chr10:76973796 chr10:76973799 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_87543 0 0 1 0 2 VDAC2 chr10:76973779 3'AG 76973779 Downstream 21bp
chr10 76973799 76973799 1 + G A BLCA 76973796 + 76973776 76973816 41 AAGGTTTTGGGTTGGTGAAACTGGATGTGAAAACAAAGTCT AAGGTTTTGGGTTGGTGAAACTGAATGTGAAAACAAAGTCT < 41bp 0.712629221675993 0.469712147409643 0.42379457 0.32548457 prediction 0.425258443351986 Functional Loss - VDAC2 ENSG00000165637 CDS Human protein_coding chr10:76973796 chr10:76973799 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_87543 0 0 1 0 2 VDAC2 chr10:76973828 5'GT 76973828 Upstream 30bp
chr17 7907424 7907424 1 + C T COAD 7907421 + 7907401 7907441 41 AAGGCAGCGTGCTGGACAGCCTGCGCAGGGCTCAAGAGCGC AAGGCAGCGTGCTGGACAGCCTGTGCAGGGCTCAAGAGCGC < 41bp 0.718965595571107 0.506337112716537 0.06805256 0.13145843 prediction 0.42525696570914 Functional Loss - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7907421 chr17:7907424 nonsynonymous SNV 0.623 3 24 hm5C_associated_SNPs_87544 0 0 0 0 1 GUCY2D chr17:7907474 5'GT 7907474 Upstream 51bp
chr3 183881465 183881465 1 + C T STAD 183881463 + 183881443 183881483 41 AGAGTGGTGAAGGAGGAGATCTCGGATGACAATGCCAAGCT AGAGTGGTGAAGGAGGAGATCTTGGATGACAATGCCAAGCT < 41bp 0.852853002405235 0.640224535701747 0.6447212 0.15725526 prediction 0.425256933406975 Functional Loss - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183881463 chr3:183881465 nonsynonymous SNV 0.976 3 23 hm5C_associated_SNPs_87545 0 0 1 0 1 DVL3 chr3:183881514 5'GT 183881514 Upstream 50bp
chr10 89505620 89505620 1 + C T UCEC 89505618 + 89505598 89505638 41 GTTTGACTTCATCTCAGGAACTCGAATGAGGAAGCTCGCCC GTTTGACTTCATCTCAGGAACTTGAATGAGGAAGCTCGCCC < 41bp 0.869562513346979 0.656936028634423 0.7535548 0.29999298 prediction 0.425252969425111 Functional Loss - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89505618 chr10:89505620 stopgain 0.967 1 23 hm5C_associated_SNPs_87548 0 0 0 0 1 PAPSS2 chr10:89505589 3'AG 89505589 Downstream 32bp
chr19 36351935 36351935 1 + G A rs35854130 36351932 + 36351912 36351952 41 ACCTGGACCCGCCGCGGTGGCGCGCAGGTACAGCCCTAAAT ACCTGGACCCGCCGCGGTGGCGCACAGGTACAGCCCTAAAT < 41bp 0.71262179659434 0.458809114677513 0.37890297 0.33189148 prediction 0.42524359318868 Functional Loss - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36351932 chr19:36351935 synonymous SNV . 0 24 hm5C_associated_SNPs_87551 0 0 0 0 1 KIRREL2 chr19:36351938 5'GT 36351938 Upstream 4bp
chr16 56913052 56913052 1 + C T CESC 56913049 + 56913029 56913069 41 GTGACCCCTGGCTGGGGTGCCTGCGAGGGGCTGGCCTGCAG GTGACCCCTGGCTGGGGTGCCTGTGAGGGGCTGGCCTGCAG < 41bp 0.774324768789063 0.561703252000354 0.52950346 0.3477431 prediction 0.425243033577419 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56913049 chr16:56913052 synonymous SNV . 0 24 hm5C_associated_SNPs_87552 1 0 0 0 2 SLC12A3 chr16:56912985 3'AG 56912985 Downstream 68bp
chr16 56913052 56913052 1 + C T CESC 56913049 + 56913029 56913069 41 GTGACCCCTGGCTGGGGTGCCTGCGAGGGGCTGGCCTGCAG GTGACCCCTGGCTGGGGTGCCTGTGAGGGGCTGGCCTGCAG < 41bp 0.774324768789063 0.561703252000354 0.52950346 0.3477431 prediction 0.425243033577419 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56913049 chr16:56913052 synonymous SNV . 0 24 hm5C_associated_SNPs_87552 1 0 0 0 2 SLC12A3 chr16:56913139 5'GT 56913139 Upstream 88bp
chr7 100779013 100779013 1 + G A COAD 100779010 + 100778990 100779030 41 TTTCAGACCAAGAGCCTCTCCACGTCGCGCAGGCGCTGCAG TTTCAGACCAAGAGCCTCTCCACATCGCGCAGGCGCTGCAG < 41bp 0.712621311876802 0.459887403304535 0.30381712 0.2860886 prediction 0.425242623753603 Functional Loss - SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100779010 chr7:100779013 nonsynonymous SNV 0.004 3 24 hm5C_associated_SNPs_87553 0 0 1 0 2 SERPINE1 chr7:100778996 3'AG 100778996 Downstream 18bp
chr7 100779013 100779013 1 + G A COAD 100779010 + 100778990 100779030 41 TTTCAGACCAAGAGCCTCTCCACGTCGCGCAGGCGCTGCAG TTTCAGACCAAGAGCCTCTCCACATCGCGCAGGCGCTGCAG < 41bp 0.712621311876802 0.459887403304535 0.30381712 0.2860886 prediction 0.425242623753603 Functional Loss - SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100779010 chr7:100779013 nonsynonymous SNV 0.004 3 24 hm5C_associated_SNPs_87553 0 0 1 0 2 SERPINE1 chr7:100779082 5'GT 100779082 Upstream 70bp
chr3 138188938 138188938 1 + G A rs544928371 138188935 + 138188915 138188955 41 ACAAGGACCCTGTGTGGAGCCAGGTGTTCTCCTTCTTTGTG ACAAGGACCCTGTGTGGAGCCAGATGTTCTCCTTCTTTGTG < 41bp 0.809290098052138 0.596673613212295 0.90348023 0.88233656 prediction 0.425232969679686 Functional Loss - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138188935 chr3:138188938 nonsynonymous SNV 0.603 0 24 hm5C_associated_SNPs_87557 0 0 0 1 2 ESYT3 chr3:138188902 3'AG 138188902 Downstream 37bp
chr3 138188938 138188938 1 + G A rs544928371 138188935 + 138188915 138188955 41 ACAAGGACCCTGTGTGGAGCCAGGTGTTCTCCTTCTTTGTG ACAAGGACCCTGTGTGGAGCCAGATGTTCTCCTTCTTTGTG < 41bp 0.809290098052138 0.596673613212295 0.90348023 0.88233656 prediction 0.425232969679686 Functional Loss - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138188935 chr3:138188938 nonsynonymous SNV 0.603 0 24 hm5C_associated_SNPs_87557 0 0 0 1 2 ESYT3 chr3:138188988 5'GT 138188988 Upstream 51bp
chr20 30037909 30037909 1 + T C BLCA 30037908 + 30037888 30037928 41 AAGGAAAGAGTCTATGTTTACTGCATAAATAATAAAATGTG AAGGAAAGAGTCTATGTTTACCGCATAAATAATAAAATGTG < 41bp 0.793777037956972 0.581163054382261 0.21928245 0.3103578 prediction 0.425227967149422 Functional Loss - DEFB123 ENSG00000180424 CDS Human protein_coding chr20:30037908 chr20:30037909 nonsynonymous SNV 0.875 4 22 hm5C_associated_SNPs_87559 0 0 0 0 1 DEFB123 chr20:30037832 3'AG 30037832 Downstream 78bp
chr15 25451342 25451342 1 + A C GBM 25451338 + 25451318 25451358 41 CTTCCCAACGCCCTGGTCTCCTGCACTGAGGTGTGGTGAGC CTTCCCAACGCCCTGGTCTCCTGCCCTGAGGTGTGGTGAGC < 41bp 0.712613545188653 0.349698140158851 0.2412388 0.21037143 prediction 0.425227090377306 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25451338 chr15:25451342 . . 0 25 hm5C_associated_SNPs_87560 0 0 0 0 1 SNHG14 chr15:25451347 5'GT 25451347 Upstream 6bp
chr19 37203746 37203746 1 + C T SKCM 37203743 + 37203723 37203763 41 ACGAGGAGAAGAGCCATGGACATCATTTGCAGGTCATACCT ACGAGGAGAAGAGCCATGGACATTATTTGCAGGTCATACCT < 41bp 0.751000706968292 0.538390361903085 0.074904025 0.11572495 prediction 0.425220690130413 Functional Loss - ZNF567 ENSG00000189042 CDS Human protein_coding chr19:37203743 chr19:37203746 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_87561 0 0 1 0 1 ZNF567 chr19:37203769 5'GT 37203769 Upstream 24bp
chr17 78201687 78201687 1 + G A rs151155883 78201684 + 78201664 78201704 41 TGCTGAAGCTGATGCGGGACCACGTGCCTCCCGTCCACCCC TGCTGAAGCTGATGCGGGACCACATGCCTCCCGTCCACCCC < 41bp 0.829244859959148 0.616634519795174 0.31943226 0.07206723 prediction 0.425220680327948 Functional Loss - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78201684 chr17:78201687 nonsynonymous SNV 0.069 1 24 hm5C_associated_SNPs_87562 0 0 1 0 1 SLC26A11 chr17:78201759 5'GT 78201759 Upstream 73bp
chr12 101480443 101480443 1 + C T HNSC 101480440 + 101480420 101480460 41 GTCTTGTCTTCCTGCCAGATCTGCGTGGTGATTGCTGCCGT GTCTTGTCTTCCTGCCAGATCTGTGTGGTGATTGCTGCCGT < 41bp 0.712607669422431 0.493256614784939 0.5758378 0.3349185 prediction 0.425215338844862 Functional Loss - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101480440 chr12:101480443 synonymous SNV . 0 24 hm5C_associated_SNPs_87566 0 0 0 0 1 ANO4 chr12:101480438 3'AG 101480438 Downstream 6bp
chr8 10383150 10383150 1 + G A PAAD 10383147 + 10383127 10383167 41 CCCTGGTCACGGGAACTCAGCTCGGTCCACGGACTCCTCTC CCCTGGTCACGGGAACTCAGCTCAGTCCACGGACTCCTCTC < 41bp 0.821881778804093 0.609274725076722 0.6731574 0.1809398 prediction 0.425214107454742 Functional Loss - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10383147 chr8:10383150 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_87567 0 0 0 0 1 PRSS55 chr8:10383249 5'GT 10383249 Upstream 100bp
chr20 23424613 23424613 1 + T C rs3746736 23424612 + 23424592 23424632 41 ATAGTCACTGTGAAGATTGGCTGGACCAAATGCAAGAGGAA ATAGTCACTGTGAAGATTGGCCGGACCAAATGCAAGAGGAA < 41bp 0.77479632344751 0.562189726138448 0.29976648 0.23123756 prediction 0.425213194618123 Functional Loss - CSTL1 ENSG00000125823 CDS Human protein_coding chr20:23424612 chr20:23424613 nonsynonymous SNV 0.873 0 22 hm5C_associated_SNPs_87568 0 1 1 3 2 CSTL1 chr20:23424571 3'AG 23424571 Downstream 43bp
chr20 23424613 23424613 1 + T C rs3746736 23424612 + 23424592 23424632 41 ATAGTCACTGTGAAGATTGGCTGGACCAAATGCAAGAGGAA ATAGTCACTGTGAAGATTGGCCGGACCAAATGCAAGAGGAA < 41bp 0.77479632344751 0.562189726138448 0.29976648 0.23123756 prediction 0.425213194618123 Functional Loss - CSTL1 ENSG00000125823 CDS Human protein_coding chr20:23424612 chr20:23424613 nonsynonymous SNV 0.873 0 22 hm5C_associated_SNPs_87568 0 1 1 3 2 CSTL1 chr20:23424681 5'GT 23424681 Upstream 69bp
chr10 95347005 95347005 1 + C T UCEC 95347003 + 95346983 95347023 41 AAGGCATCAAGGAAGAGGCTCACGGTAAGCCTGGCCTACTC AAGGCATCAAGGAAGAGGCTCATGGTAAGCCTGGCCTACTC < 41bp 0.824761713223658 0.612162545151423 0.3299457 0.46780723 prediction 0.425198336144469 Functional Loss - FFAR4 ENSG00000186188 CDS Human protein_coding chr10:95347003 chr10:95347005 nonsynonymous SNV 0.488 1 23 hm5C_associated_SNPs_87571 0 0 0 0 1 FFAR4 chr10:95346977 3'AG 95346977 Downstream 29bp
chrX 23353269 23353269 1 + T C UCEC 23353268 + 23353248 23353288 41 GACCTGCAGACCCCCGGGCGCTACGGCCGGGTCATCGTCAC GACCTGCAGACCCCCGGGCGCCACGGCCGGGTCATCGTCAC < 41bp 0.712597588210835 0.470743400738958 0.124647886 0.105124354 prediction 0.425195176421669 Functional Loss - PTCHD1 ENSG00000165186 CDS Human protein_coding chrX:23353268 chrX:23353269 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_87572 0 0 0 0 1 PTCHD1 chrX:23353343 5'GT 23353343 Upstream 75bp
chr16 56673830 56673830 1 + G T UCEC 56673826 + 56673806 56673846 41 TGTGCCCAGGGCTGCATCTGCAAAGGGGCATCAGAGAAGTG TGTGCCCAGGGCTGCATCTGCAAATGGGCATCAGAGAAGTG < 41bp 0.723412654116564 0.510816422335886 0.40178758 0.40387934 prediction 0.425192463561356 Functional Loss - MT1A ENSG00000205362 CDS Human protein_coding chr16:56673826 chr16:56673830 nonsynonymous SNV 0.805 3 25 hm5C_associated_SNPs_87573 0 0 0 0 1 MT1A chr16:56673771 3'AG 56673771 Downstream 60bp
chr10 115529654 115529654 1 + G A LUAD 115529651 + 115529631 115529671 41 GCTCACCAAGAAATGGTCTCCAAGACAAGGTAATGGGGCTC GCTCACCAAGAAATGGTCTCCAAAACAAGGTAATGGGGCTC < 41bp 0.775921210183451 0.563325121048092 0.2841066 0.7634508 prediction 0.425192178270719 Functional Loss - PLEKHS1 ENSG00000148735 CDS Human protein_coding chr10:115529651 chr10:115529654 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_87574 0 0 0 0 1 PLEKHS1 chr10:115529659 5'GT 115529659 Upstream 6bp
chr16 20477025 20477025 1 + G A SKCM 20477022 + 20477002 20477042 41 CCCGAGTGCCTGAGTGGTGGCTGGTGATCCTGGGCTGCATT CCCGAGTGCCTGAGTGGTGGCTGATGATCCTGGGCTGCATT < 41bp 0.712594677564278 0.470520715166161 0.7272278 0.3582235 prediction 0.425189355128555 Functional Loss - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20477022 chr16:20477025 nonsynonymous SNV 0.932 0 24 hm5C_associated_SNPs_87575 0 0 0 0 1 ACSM2A chr16:20477049 5'GT 20477049 Upstream 25bp
chr14 65520043 65520043 1 + G A UCEC 65520040 + 65520020 65520060 41 GATGTGCTGCCAGTGCCCTGCGGGGGGGCTTCTGGATAAAC GATGTGCTGCCAGTGCCCTGCGGAGGGGCTTCTGGATAAAC < 41bp 0.81603229562558 0.603440507589855 0.89885473 0.7135885 prediction 0.425183576071449 Functional Loss - CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65520040 chr14:65520043 nonsynonymous SNV 0.446 4 24 hm5C_associated_SNPs_87577 0 0 1 0 2 CHURC1-FNTB;FNTB chr14:65519956 3'AG 65519956 Downstream 88bp
chr14 65520043 65520043 1 + G A UCEC 65520040 + 65520020 65520060 41 GATGTGCTGCCAGTGCCCTGCGGGGGGGCTTCTGGATAAAC GATGTGCTGCCAGTGCCCTGCGGAGGGGCTTCTGGATAAAC < 41bp 0.81603229562558 0.603440507589855 0.89885473 0.7135885 prediction 0.425183576071449 Functional Loss - CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65520040 chr14:65520043 nonsynonymous SNV 0.446 4 24 hm5C_associated_SNPs_87577 0 0 1 0 2 CHURC1-FNTB;FNTB chr14:65520067 5'GT 65520067 Upstream 25bp
chr5 55056085 55056085 1 + G T LUAD 55056082 + 55056062 55056102 41 CATGAAAAGTGGATTTGCCTCTGGGCGGAATTTTGGAAACA CATGAAAAGTGGATTTGCCTCTGTGCGGAATTTTGGAAACA < 41bp 0.712590753562492 0.337492949971161 0.82564485 0.15328503 prediction 0.425181507124984 Functional Loss - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55056082 chr5:55056085 nonsynonymous SNV 0.157 4 24 hm5C_associated_SNPs_87578 0 0 0 0 2 DDX4 chr5:55056028 3'AG 55056028 Downstream 58bp
chr5 55056085 55056085 1 + G T LUAD 55056082 + 55056062 55056102 41 CATGAAAAGTGGATTTGCCTCTGGGCGGAATTTTGGAAACA CATGAAAAGTGGATTTGCCTCTGTGCGGAATTTTGGAAACA < 41bp 0.712590753562492 0.337492949971161 0.82564485 0.15328503 prediction 0.425181507124984 Functional Loss - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55056082 chr5:55056085 nonsynonymous SNV 0.157 4 24 hm5C_associated_SNPs_87578 0 0 0 0 2 DDX4 chr5:55056105 5'GT 55056105 Upstream 21bp
chr1 109238743 109238743 1 + C T UCEC 109238741 + 109238721 109238761 41 ATTATTTACCCTGAAGTTAACTCGAAAGCAAGTGATGGGTC ATTATTTACCCTGAAGTTAACTTGAAAGCAAGTGATGGGTC < 41bp 0.770011859282748 0.55742149188935 0.7811738 0.22896028 prediction 0.425180734786796 Functional Loss - PRPF38B ENSG00000134186 CDS Human protein_coding chr1:109238741 chr1:109238743 stopgain 0.999 1 23 hm5C_associated_SNPs_87579 0 0 1 0 2 PRPF38B chr1:109238665 3'AG 109238665 Downstream 79bp
chr1 109238743 109238743 1 + C T UCEC 109238741 + 109238721 109238761 41 ATTATTTACCCTGAAGTTAACTCGAAAGCAAGTGATGGGTC ATTATTTACCCTGAAGTTAACTTGAAAGCAAGTGATGGGTC < 41bp 0.770011859282748 0.55742149188935 0.7811738 0.22896028 prediction 0.425180734786796 Functional Loss - PRPF38B ENSG00000134186 CDS Human protein_coding chr1:109238741 chr1:109238743 stopgain 0.999 1 23 hm5C_associated_SNPs_87579 0 0 1 0 2 PRPF38B chr1:109238816 5'GT 109238816 Upstream 74bp
chr20 1285597 1285597 1 + C T rs147752801 1285595 + 1285575 1285615 41 GGATTGAGGAGGAGTGCCACCGCGTGGAGGCCCAGCTGGCC GGATTGAGGAGGAGTGCCACCGTGTGGAGGCCCAGCTGGCC < 41bp 0.712589556955587 0.44544017817626 0.82325554 0.83946705 prediction 0.425179113911174 Functional Loss - SNPH ENSG00000101298 CDS Human protein_coding chr20:1285595 chr20:1285597 synonymous SNV . 0 23 hm5C_associated_SNPs_87580 0 0 0 0 1 SNPH chr20:1285522 3'AG 1285522 Downstream 76bp
chr22 17976490 17976490 1 + G A HNSC 17976487 + 17976467 17976507 41 TCATCAACTACCGCTGGGAGCTCGAAGAAGGGAAGCCCAAC TCATCAACTACCGCTGGGAGCTCAAAGAAGGGAAGCCCAAC < 41bp 0.725761233460159 0.51317336244696 0.34263882 0.14338034 prediction 0.425175742026397 Functional Loss - CECR2 ENSG00000099954 CDS Human protein_coding chr22:17976487 chr22:17976490 nonsynonymous SNV 0.871 2 24 hm5C_associated_SNPs_87581 0 0 0 0 1 CECR2 chr22:17976435 3'AG 17976435 Downstream 56bp
chr19 4950913 4950913 1 + G A UCEC 4950910 + 4950890 4950930 41 AGAAGGGGAAGTCCGGGTTTCTCGTGTGGCGCTACCTTCTG AGAAGGGGAAGTCCGGGTTTCTCATGTGGCGCTACCTTCTG < 41bp 0.712586658430961 0.469164075951495 0.7869327 0.533597 prediction 0.425173316861921 Functional Loss - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4950910 chr19:4950913 . 0.673 2 24 hm5C_associated_SNPs_87582 0 0 0 0 2 UHRF1 chr19:4950871 3'AG 4950871 Downstream 43bp
chr19 4950913 4950913 1 + G A UCEC 4950910 + 4950890 4950930 41 AGAAGGGGAAGTCCGGGTTTCTCGTGTGGCGCTACCTTCTG AGAAGGGGAAGTCCGGGTTTCTCATGTGGCGCTACCTTCTG < 41bp 0.712586658430961 0.469164075951495 0.7869327 0.533597 prediction 0.425173316861921 Functional Loss - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4950910 chr19:4950913 . 0.673 2 24 hm5C_associated_SNPs_87582 0 0 0 0 2 UHRF1 chr19:4951008 5'GT 4951008 Upstream 96bp
chr20 37209951 37209951 1 + T C UCEC 37209950 + 37209930 37209970 41 ACATTTTCTTTCCTGGTTTTCTGGTTCTGCCTCCCTGTGGG ACATTTTCTTTCCTGGTTTTCCGGTTCTGCCTCCCTGTGGG < 41bp 0.740127972618001 0.527547594382682 0.15502727 0.245307 prediction 0.425160756470639 Functional Loss - ADIG ENSG00000182035 CDS Human protein_coding chr20:37209950 chr20:37209951 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_87585 0 0 0 0 1 ADIG chr20:37210017 5'GT 37210017 Upstream 67bp
chrX 46949185 46949185 1 + T C STAD 46949184 + 46949164 46949204 41 GGTTTTTGTAGGCACCATGGCTGAGGAAACAGCTCCAGCAG GGTTTTTGTAGGCACCATGGCCGAGGAAACAGCTCCAGCAG < 41bp 0.712580359638304 0.484655280533252 0.38269004 0.7216785 prediction 0.425160719276608 Functional Loss - RGN ENSG00000130988 CDS Human protein_coding chrX:46949184 chrX:46949185 synonymous SNV . 0 22 hm5C_associated_SNPs_87586 0 0 0 0 1 RGN chrX:46949175 3'AG 46949175 Downstream 11bp
chr12 75875646 75875646 1 + A T COAD 75875642 + 75875622 75875662 41 CCCAGCACTAGCCCAAATTGCAAAAGCATGGGCCAGCAATT CCCAGCACTAGCCCAAATTGCAAATGCATGGGCCAGCAATT < 41bp 0.712578871799338 0.398067826096193 0.13984597 0.124049634 prediction 0.425157743598677 Functional Loss - GLIPR1 ENSG00000139278 CDS Human protein_coding chr12:75875642 chr12:75875646 nonsynonymous SNV 0.987 4 25 hm5C_associated_SNPs_87588 0 0 0 0 1 GLIPR1 chr12:75875614 3'AG 75875614 Downstream 33bp
chr18 8786015 8786015 1 + C T ESCA 8786013 + 8785993 8786033 41 GAGCCTGCGCCTCCGAGCCGCGCGGGAGCTGCACCGCCGCG GAGCCTGCGCCTCCGAGCCGCGTGGGAGCTGCACCGCCGCG < 41bp 0.810430111128316 0.597855598078156 0.8905577 0.9057113 prediction 0.425149026100321 Functional Loss - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8786013 chr18:8786015 nonsynonymous SNV 0.266 1 23 hm5C_associated_SNPs_87592 0 0 1 0 2 MTCL1 chr18:8785934 3'AG 8785934 Downstream 82bp
chr18 8786015 8786015 1 + C T ESCA 8786013 + 8785993 8786033 41 GAGCCTGCGCCTCCGAGCCGCGCGGGAGCTGCACCGCCGCG GAGCCTGCGCCTCCGAGCCGCGTGGGAGCTGCACCGCCGCG < 41bp 0.810430111128316 0.597855598078156 0.8905577 0.9057113 prediction 0.425149026100321 Functional Loss - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8786013 chr18:8786015 nonsynonymous SNV 0.266 1 23 hm5C_associated_SNPs_87592 0 0 1 0 2 MTCL1 chr18:8786089 5'GT 8786089 Upstream 75bp
chr19 17988635 17988635 1 + C T LUSC 17988632 + 17988612 17988652 41 GCGTGAACCAGGCGCAGGTGCAGCGCTACGTGGCTTGCCGC GCGTGAACCAGGCGCAGGTGCAGTGCTACGTGGCTTGCCGC < 41bp 0.712572618684524 0.499278587216709 0.83999133 0.5201587 prediction 0.425145237369047 Functional Loss - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17988632 chr19:17988635 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_87595 0 0 0 0 1 SLC5A5 chr19:17988672 5'GT 17988672 Upstream 38bp
chr15 85384080 85384080 1 + G T HNSC 85384077 + 85384057 85384097 41 CCCCACCTCAGGCCTCTGTGCAGGTGCCGACGCCCCCTGCC CCCCACCTCAGGCCTCTGTGCAGTTGCCGACGCCCCCTGCC < 41bp 0.712569838327242 0.301789366392259 0.9231239 0.87430775 prediction 0.425139676654485 Functional Loss - ALPK3 ENSG00000136383 CDS Human protein_coding chr15:85384077 chr15:85384080 nonsynonymous SNV 0.887 2 24 hm5C_associated_SNPs_87598 0 0 0 0 1 ALPK3 chr15:85384163 5'GT 85384163 Upstream 84bp
chr1 48699331 48699331 1 + G A BRCA 48699328 + 48699308 48699348 41 GCCATTACTTCTTCCACAGACGAGGTGGGCTGCGTGGACCC GCCATTACTTCTTCCACAGACGAAGTGGGCTGCGTGGACCC < 41bp 0.805472882325373 0.592906942880132 0.29791555 0.21176976 prediction 0.425131878890483 Functional Loss - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48699328 chr1:48699331 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_87603 0 0 1 0 1 SLC5A9 chr1:48699327 3'AG 48699327 Downstream 5bp
chr1 156880483 156880483 1 + G A HNSC 156880480 + 156880460 156880500 41 AACCACTCCTTCTGCCACCCCTCGAACGGGACCTGCTACTG AACCACTCCTTCTGCCACCCCTCAAACGGGACCTGCTACTG < 41bp 0.816549505171961 0.603989039342033 0.91777647 0.18963656 prediction 0.425120931659857 Functional Loss - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156880480 chr1:156880483 synonymous SNV . 0 24 hm5C_associated_SNPs_87608 0 0 0 0 1 PEAR1 chr1:156880410 3'AG 156880410 Downstream 74bp
chr12 121618235 121618235 1 + G A rs74357548 121618232 + 121618212 121618252 41 AGCTACTAGGGAGAAGTCTGCAAGATGTCAAGGGCCAAGAA AGCTACTAGGGAGAAGTCTGCAAAATGTCAAGGGCCAAGAA < 41bp 0.791464528286846 0.578905233972072 0.9012743 0.35882345 prediction 0.425118588629548 Functional Loss - P2RX7 ENSG00000089041 CDS Human protein_coding chr12:121618232 chr12:121618235 nonsynonymous SNV 0.987 0 24 hm5C_associated_SNPs_87609 0 0 0 1 2 P2RX7 chr12:121618157 3'AG 121618157 Downstream 79bp
chr12 121618235 121618235 1 + G A rs74357548 121618232 + 121618212 121618252 41 AGCTACTAGGGAGAAGTCTGCAAGATGTCAAGGGCCAAGAA AGCTACTAGGGAGAAGTCTGCAAAATGTCAAGGGCCAAGAA < 41bp 0.791464528286846 0.578905233972072 0.9012743 0.35882345 prediction 0.425118588629548 Functional Loss - P2RX7 ENSG00000089041 CDS Human protein_coding chr12:121618232 chr12:121618235 nonsynonymous SNV 0.987 0 24 hm5C_associated_SNPs_87609 0 0 0 1 2 P2RX7 chr12:121618258 5'GT 121618258 Upstream 24bp
chr7 133863332 133863332 1 + C T COAD 133863329 + 133863309 133863349 41 CACCTGACCCATGTTGTCAACAGCGTGATGCAGCCGCAGAG CACCTGACCCATGTTGTCAACAGTGTGATGCAGCCGCAGAG < 41bp 0.735079045311919 0.522526610368803 0.37231982 0.38257322 prediction 0.425104869886233 Functional Loss - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133863329 chr7:133863332 synonymous SNV . 0 24 hm5C_associated_SNPs_87615 0 0 0 0 2 LRGUK chr7:133863255 3'AG 133863255 Downstream 78bp
chr7 133863332 133863332 1 + C T COAD 133863329 + 133863309 133863349 41 CACCTGACCCATGTTGTCAACAGCGTGATGCAGCCGCAGAG CACCTGACCCATGTTGTCAACAGTGTGATGCAGCCGCAGAG < 41bp 0.735079045311919 0.522526610368803 0.37231982 0.38257322 prediction 0.425104869886233 Functional Loss - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133863329 chr7:133863332 synonymous SNV . 0 24 hm5C_associated_SNPs_87615 0 0 0 0 2 LRGUK chr7:133863361 5'GT 133863361 Upstream 30bp
chr8 21891772 21891772 1 + G T LUAD 21891769 + 21891749 21891789 41 AAAGGCTGGTGCCCCAGAAGCAGGCGAGCGTGGCTAAGGTG AAAGGCTGGTGCCCCAGAAGCAGTCGAGCGTGGCTAAGGTG < 41bp 0.712550004900098 0.306964461772451 0.8841598 0.30175114 prediction 0.425100009800196 Functional Loss - NPM2 ENSG00000158806 CDS Human protein_coding chr8:21891769 chr8:21891772 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_87616 0 0 1 0 1 NPM2 chr8:21891786 5'GT 21891786 Upstream 15bp
chr14 23848328 23848328 1 + C T LGG 23848325 + 23848305 23848345 41 CCGGGACGGAGCTGCCATTGCTGCTTTTGTGAGTTCAGCCC CCGGGACGGAGCTGCCATTGCTGTTTTTGTGAGTTCAGCCC < 41bp 0.712679296576029 0.500132600275473 0.15158021 0.15045539 prediction 0.425093392601112 Functional Loss - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23848325 chr14:23848328 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_87619 0 0 0 0 2 CMTM5 chr14:23848240 3'AG 23848240 Downstream 89bp
chr14 23848328 23848328 1 + C T LGG 23848325 + 23848305 23848345 41 CCGGGACGGAGCTGCCATTGCTGCTTTTGTGAGTTCAGCCC CCGGGACGGAGCTGCCATTGCTGTTTTTGTGAGTTCAGCCC < 41bp 0.712679296576029 0.500132600275473 0.15158021 0.15045539 prediction 0.425093392601112 Functional Loss - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23848325 chr14:23848328 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_87619 0 0 0 0 2 CMTM5 chr14:23848332 5'GT 23848332 Upstream 5bp
chr11 18472599 18472599 1 + G A LUAD 18472596 + 18472576 18472616 41 TCAGATGTTGTGAAAATTAACTTGAATTCTGAGGAGGAGGC TCAGATGTTGTGAAAATTAACTTAAATTCTGAGGAGGAGGC < 41bp 0.750523872574759 0.537978337064713 0.23647696 0.13388905 prediction 0.425091071020091 Functional Loss - LDHC ENSG00000166796 CDS Human protein_coding chr11:18472596 chr11:18472599 synonymous SNV . 0 24 hm5C_associated_SNPs_87620 0 0 0 3 1 LDHC chr11:18472510 3'AG 18472510 Downstream 90bp
chr19 48221862 48221862 1 + C T UCEC 48221860 + 48221840 48221880 41 GTGCCAAGCAGAGAGTGAGCCGCGGTGAGTGGGGCCAGACC GTGCCAAGCAGAGAGTGAGCCGTGGTGAGTGGGGCCAGACC < 41bp 0.838762567342693 0.626218340500018 0.76997715 0.4684326 prediction 0.42508845368535 Functional Loss - EHD2 ENSG00000024422 CDS Human protein_coding chr19:48221860 chr19:48221862 synonymous SNV . 0 23 hm5C_associated_SNPs_87621 0 0 0 0 2 EHD2 chr19:48221766 3'AG 48221766 Downstream 97bp
chr19 48221862 48221862 1 + C T UCEC 48221860 + 48221840 48221880 41 GTGCCAAGCAGAGAGTGAGCCGCGGTGAGTGGGGCCAGACC GTGCCAAGCAGAGAGTGAGCCGTGGTGAGTGGGGCCAGACC < 41bp 0.838762567342693 0.626218340500018 0.76997715 0.4684326 prediction 0.42508845368535 Functional Loss - EHD2 ENSG00000024422 CDS Human protein_coding chr19:48221860 chr19:48221862 synonymous SNV . 0 23 hm5C_associated_SNPs_87621 0 0 0 0 2 EHD2 chr19:48221863 5'GT 48221863 Upstream 2bp
chr1 150469053 150469053 1 + G T UCEC 150469050 + 150469030 150469070 41 ACAACAGAATTGCTGAGGGTCTGGGAAGCATGGAGGGAGGA ACAACAGAATTGCTGAGGGTCTGTGAAGCATGGAGGGAGGA < 41bp 0.712541997618592 0.310752865420902 0.37964112 0.12402895 prediction 0.425083995237184 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150469050 chr1:150469053 nonsynonymous SNV 0.802 4 24 hm5C_associated_SNPs_87622 0 0 1 0 2 TARS2 chr1:150468958 3'AG 150468958 Downstream 96bp
chr1 150469053 150469053 1 + G T UCEC 150469050 + 150469030 150469070 41 ACAACAGAATTGCTGAGGGTCTGGGAAGCATGGAGGGAGGA ACAACAGAATTGCTGAGGGTCTGTGAAGCATGGAGGGAGGA < 41bp 0.712541997618592 0.310752865420902 0.37964112 0.12402895 prediction 0.425083995237184 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150469050 chr1:150469053 nonsynonymous SNV 0.802 4 24 hm5C_associated_SNPs_87622 0 0 1 0 2 TARS2 chr1:150469104 5'GT 150469104 Upstream 52bp
chr13 52330513 52330513 1 + T C UCEC 52330512 + 52330492 52330532 41 GCCGTCTGTGGCAAGTGCAGCTCCAAGCGCTCCTCCATCCC GCCGTCTGTGGCAAGTGCAGCCCCAAGCGCTCCTCCATCCC < 41bp 0.712540710053332 0.431541286879049 0.8172947 0.032475322 prediction 0.425081420106664 Functional Loss - WDFY2 ENSG00000139668 CDS Human protein_coding chr13:52330512 chr13:52330513 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_87623 0 0 1 0 1 WDFY2 chr13:52330468 3'AG 52330468 Downstream 46bp
chr21 15599221 15599221 1 + A T SKCM 15599219 + 15599199 15599239 41 AGCAGTGGCATGTGTATAATCCAGTGCTGCAGCTTCCTTAC AGCAGTGGCATGTGTATAATCCTGTGCTGCAGCTTCCTTAC < 41bp 0.718068817971054 0.505530378693953 0.4380274 0.18498152 prediction 0.425076878554202 Functional Loss - RBM11 ENSG00000185272 CDS Human protein_coding chr21:15599219 chr21:15599221 synonymous SNV . 0 23 hm5C_associated_SNPs_87624 0 0 1 0 1 RBM11 chr21:15599201 3'AG 15599201 Downstream 21bp
chr14 77336480 77336480 1 + G A rs148780367 77336477 + 77336457 77336497 41 TTTCGTACCAGTTTCTTGAACACGATGAAGCCATAGCAACA TTTCGTACCAGTTTCTTGAACACAATGAAGCCATAGCAACA < 41bp 0.789863109675079 0.577326407439379 0.24021357 0.14606133 prediction 0.425073404471401 Functional Loss - LRRC74A ENSG00000100565 CDS Human protein_coding chr14:77336477 chr14:77336480 synonymous SNV . 0 24 hm5C_associated_SNPs_87625 0 0 0 2 1 LRRC74A chr14:77336468 3'AG 77336468 Downstream 13bp
chr17 5250109 5250109 1 + G T UCEC 5250106 + 5250086 5250126 41 TTAAAGAACTGAATCATTATCTGGAAGCTGAGAAATCTTGT TTAAAGAACTGAATCATTATCTGTAAGCTGAGAAATCTTGT < 41bp 0.712528797700526 0.34313120786507 0.35780215 0.29705495 prediction 0.425057595401052 Functional Loss - RABEP1 ENSG00000029725 CDS Human protein_coding chr17:5250106 chr17:5250109 stopgain 1.000 1 24 hm5C_associated_SNPs_87628 0 0 1 0 1 RABEP1 chr17:5250085 3'AG 5250085 Downstream 25bp
chr9 125865461 125865461 1 + C T ESCA 125865458 + 125865438 125865478 41 AACACTGAGCTCCATAAAGACAGCAACCGGGGTTCAAGGGA AACACTGAGCTCCATAAAGACAGTAACCGGGGTTCAAGGGA < 41bp 0.732751068190704 0.520225062757649 0.23861796 0.31670648 prediction 0.425052010866109 Functional Loss - RABGAP1 ENSG00000011454 CDS Human protein_coding chr9:125865458 chr9:125865461 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_87629 0 0 1 0 1 RABGAP1 chr9:125865370 3'AG 125865370 Downstream 92bp
chr6 167717468 167717468 1 + G T SARC 167717466 + 167717446 167717486 41 TCCAACCCATACGAGATGTTCAGCGGGAAAGTGAAGGAGAG TCCAACCCATACGAGATGTTCATCGGGAAAGTGAAGGAGAG < 41bp 0.712523798544737 0.350833845504624 0.8364364 0.31135616 prediction 0.425047597089474 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167717466 chr6:167717468 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_87630 0 0 0 0 1 UNC93A chr6:167717407 3'AG 167717407 Downstream 62bp
chr21 35257411 35257411 1 + C T COAD 35257409 + 35257389 35257429 41 TAGAGACTGAGAAAAAGAAGCGCGAGAAAGCGTACCTGGGT TAGAGACTGAGAAAAAGAAGCGTGAGAAAGCGTACCTGGGT < 41bp 0.712522405544146 0.475418203728386 0.38652223 0.28111863 prediction 0.425044811088292 Functional Loss - ITSN1 ENSG00000205726 CDS Human protein_coding chr21:35257409 chr21:35257411 synonymous SNV . 0 23 hm5C_associated_SNPs_87631 0 0 0 0 2 ITSN1 chr21:35257345 3'AG 35257345 Downstream 67bp
chr21 35257411 35257411 1 + C T COAD 35257409 + 35257389 35257429 41 TAGAGACTGAGAAAAAGAAGCGCGAGAAAGCGTACCTGGGT TAGAGACTGAGAAAAAGAAGCGTGAGAAAGCGTACCTGGGT < 41bp 0.712522405544146 0.475418203728386 0.38652223 0.28111863 prediction 0.425044811088292 Functional Loss - ITSN1 ENSG00000205726 CDS Human protein_coding chr21:35257409 chr21:35257411 synonymous SNV . 0 23 hm5C_associated_SNPs_87631 0 0 0 0 2 ITSN1 chr21:35257427 5'GT 35257427 Upstream 17bp
chr8 22140659 22140659 1 + G A LUSC 22140656 + 22140636 22140676 41 GTACCTTCAGCACACCGTCCCGGGGTCCCCCGCAGCTGTCA GTACCTTCAGCACACCGTCCCGGAGTCCCCCGCAGCTGTCA < 41bp 0.840083469849197 0.627565068246887 0.9357177 0.8748554 prediction 0.425036803204621 Functional Loss - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22140656 chr8:22140659 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_87633 0 0 0 0 1 PIWIL2 chr8:22140753 5'GT 22140753 Upstream 95bp
chr18 43319551 43319551 1 + C T LUAD 43319548 + 43319528 43319568 41 TTTGGACTCTGGGGTTTCAACAGCTCTCTGGCCTGCATTGC TTTGGACTCTGGGGTTTCAACAGTTCTCTGGCCTGCATTGC < 41bp 0.726364954996152 0.513849288933614 0.85470027 0.58250254 prediction 0.425031332125077 Functional Loss - SLC14A1 ENSG00000141469 CDS Human protein_coding chr18:43319548 chr18:43319551 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_87636 0 0 0 0 2 SLC14A1 chr18:43319493 3'AG 43319493 Downstream 59bp
chr18 43319551 43319551 1 + C T LUAD 43319548 + 43319528 43319568 41 TTTGGACTCTGGGGTTTCAACAGCTCTCTGGCCTGCATTGC TTTGGACTCTGGGGTTTCAACAGTTCTCTGGCCTGCATTGC < 41bp 0.726364954996152 0.513849288933614 0.85470027 0.58250254 prediction 0.425031332125077 Functional Loss - SLC14A1 ENSG00000141469 CDS Human protein_coding chr18:43319548 chr18:43319551 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_87636 0 0 0 0 2 SLC14A1 chr18:43319627 5'GT 43319627 Upstream 77bp
chr1 3683132 3683132 1 + G A SKCM 3683129 + 3683109 3683149 41 TCCGAGAAGATAAGAAACACCAAGAGATGATGGGGCTCATT TCCGAGAAGATAAGAAACACCAAAAGATGATGGGGCTCATT < 41bp 0.787404109760373 0.574890537156094 0.922994 0.9224236 prediction 0.425027145208558 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3683129 chr1:3683132 nonsynonymous SNV 0.944 4 24 hm5C_associated_SNPs_87639 0 0 0 0 2 CCDC27 chr1:3683099 3'AG 3683099 Downstream 34bp
chr1 3683132 3683132 1 + G A SKCM 3683129 + 3683109 3683149 41 TCCGAGAAGATAAGAAACACCAAGAGATGATGGGGCTCATT TCCGAGAAGATAAGAAACACCAAAAGATGATGGGGCTCATT < 41bp 0.787404109760373 0.574890537156094 0.922994 0.9224236 prediction 0.425027145208558 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3683129 chr1:3683132 nonsynonymous SNV 0.944 4 24 hm5C_associated_SNPs_87639 0 0 0 0 2 CCDC27 chr1:3683176 5'GT 3683176 Upstream 45bp
chr1 110998924 110998924 1 + C T SKCM 110998922 + 110998902 110998942 41 AACCTGCTGTGCTCCAGGTTCCCGGACGGCAGGTACCGCTG AACCTGCTGTGCTCCAGGTTCCTGGACGGCAGGTACCGCTG < 41bp 0.712513451093898 0.454473292232811 0.46057907 0.3353203 prediction 0.425026902187795 Functional Loss - PROK1 ENSG00000143125 CDS Human protein_coding chr1:110998922 chr1:110998924 nonsynonymous SNV 0.905 1 23 hm5C_associated_SNPs_87640 0 0 0 0 1 PROK1 chr1:110998854 3'AG 110998854 Downstream 71bp
chr19 55175259 55175259 1 + A C LUAD 55175258 + 55175238 55175278 41 GCTGAGCCAGGCTCTGTGATCAGCTGGGGGAACTCTGTGAC GCTGAGCCAGGCTCTGTGATCCGCTGGGGGAACTCTGTGAC < 41bp 0.836564762691214 0.624054084040523 0.8654933 0.3964483 prediction 0.425021357301383 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55175258 chr19:55175259 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_87641 0 0 0 0 1 LILRB4 chr19:55175212 3'AG 55175212 Downstream 48bp
chr8 144461624 144461624 1 + C T SKCM 144461621 + 144461601 144461641 41 GAGGGCCTCTCACCACCTGCCTCCATGGCCCCCCAAGACTG GAGGGCCTCTCACCACCTGCCTCTATGGCCCCCCAAGACTG < 41bp 0.715079135820305 0.502569472788776 0.9762369 0.95768404 prediction 0.425019326063057 Functional Loss - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144461621 chr8:144461624 synonymous SNV . 0 24 hm5C_associated_SNPs_87643 0 0 1 0 1 RHPN1 chr8:144461678 5'GT 144461678 Upstream 55bp
chr2 29390358 29390358 1 + G A SKCM 29390355 + 29390335 29390375 41 TTCATAGAGTAACAGATTCCCTGGATACCCTTTCAGAAATT TTCATAGAGTAACAGATTCCCTGAATACCCTTTCAGAAATT < 41bp 0.712508233850766 0.498693372945801 0.20571795 0.0612233 prediction 0.425016467701531 Functional Loss - CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29390355 chr2:29390358 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_87644 0 0 0 0 1 CLIP4 chr2:29390406 5'GT 29390406 Upstream 49bp
chr18 28909913 28909913 1 + G T SARC 28909911 + 28909891 28909931 41 TTAGAGAGGCCTCTAGAGCTCAGAGTCAGGGTTTTGGATAT TTAGAGAGGCCTCTAGAGCTCATAGTCAGGGTTTTGGATAT < 41bp 0.712507522473321 0.355585446435724 0.16426986 0.00629434 prediction 0.425015044946641 Functional Loss - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28909911 chr18:28909913 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_87645 0 0 0 0 2 DSG1 chr18:28909855 3'AG 28909855 Downstream 59bp
chr18 28909913 28909913 1 + G T SARC 28909911 + 28909891 28909931 41 TTAGAGAGGCCTCTAGAGCTCAGAGTCAGGGTTTTGGATAT TTAGAGAGGCCTCTAGAGCTCATAGTCAGGGTTTTGGATAT < 41bp 0.712507522473321 0.355585446435724 0.16426986 0.00629434 prediction 0.425015044946641 Functional Loss - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28909911 chr18:28909913 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_87645 0 0 0 0 2 DSG1 chr18:28909999 5'GT 28909999 Upstream 87bp
chr17 37815749 37815749 1 + G A rs73296109 37815746 + 37815726 37815766 41 ATCCGCCAGGGGAAGGAGGCCACGGCAGTGGTGGACCAGAT ATCCGCCAGGGGAAGGAGGCCACAGCAGTGGTGGACCAGAT < 41bp 0.777264804947556 0.564757945540872 0.73817325 0.7130172 prediction 0.425013718813369 Functional Loss - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37815746 chr17:37815749 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_87647 0 0 1 0 2 STARD3 chr17:37815714 3'AG 37815714 Downstream 36bp
chr17 37815749 37815749 1 + G A rs73296109 37815746 + 37815726 37815766 41 ATCCGCCAGGGGAAGGAGGCCACGGCAGTGGTGGACCAGAT ATCCGCCAGGGGAAGGAGGCCACAGCAGTGGTGGACCAGAT < 41bp 0.777264804947556 0.564757945540872 0.73817325 0.7130172 prediction 0.425013718813369 Functional Loss - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37815746 chr17:37815749 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_87647 0 0 1 0 2 STARD3 chr17:37815806 5'GT 37815806 Upstream 58bp
chr16 69874163 69874163 1 + G T LUSC 69874161 + 69874141 69874181 41 GCCTAATGGCAGTGCCCTGACAGATGGTGAGTGCCGCCCTG GCCTAATGGCAGTGCCCTGACATATGGTGAGTGCCGCCCTG < 41bp 0.712506802222819 0.354370702684497 0.682166 0.46724555 prediction 0.425013604445637 Functional Loss - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69874161 chr16:69874163 nonsynonymous SNV 0.851 1 23 hm5C_associated_SNPs_87648 0 0 1 0 1 WWP2 chr16:69874166 5'GT 69874166 Upstream 4bp
chr3 130717162 130717162 1 + C T SKCM 130717160 + 130717140 130717180 41 ACGAGACAATGTGATTACACCTCGAGACACAACAATGACCT ACGAGACAATGTGATTACACCTTGAGACACAACAATGACCT < 41bp 0.712499698797642 0.41963537022503 0.5687175 0.073531985 prediction 0.424999397595284 Functional Loss - ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130717160 chr3:130717162 stopgain 1.000 1 23 hm5C_associated_SNPs_87652 0 0 1 0 2 ATP2C1 chr3:130717138 3'AG 130717138 Downstream 25bp
chr3 130717162 130717162 1 + C T SKCM 130717160 + 130717140 130717180 41 ACGAGACAATGTGATTACACCTCGAGACACAACAATGACCT ACGAGACAATGTGATTACACCTTGAGACACAACAATGACCT < 41bp 0.712499698797642 0.41963537022503 0.5687175 0.073531985 prediction 0.424999397595284 Functional Loss - ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130717160 chr3:130717162 stopgain 1.000 1 23 hm5C_associated_SNPs_87652 0 0 1 0 2 ATP2C1 chr3:130717233 5'GT 130717233 Upstream 72bp
chr3 46621530 46621530 1 + A C LUSC 46621529 + 46621509 46621549 41 GTCAGCTCCGCTGCTTTCCTCAGGCATTTCTACCCGGCTGT GTCAGCTCCGCTGCTTTCCTCCGGCATTTCTACCCGGCTGT < 41bp 0.712499552483302 0.442563905342802 0.91018313 0.88525736 prediction 0.424999104966604 Functional Loss - TDGF1 ENSG00000241186 CDS Human protein_coding chr3:46621529 chr3:46621530 nonsynonymous SNV 0.556 5 22 hm5C_associated_SNPs_87653 0 0 0 0 2 TDGF1 chr3:46621441 3'AG 46621441 Downstream 90bp
chr3 46621530 46621530 1 + A C LUSC 46621529 + 46621509 46621549 41 GTCAGCTCCGCTGCTTTCCTCAGGCATTTCTACCCGGCTGT GTCAGCTCCGCTGCTTTCCTCCGGCATTTCTACCCGGCTGT < 41bp 0.712499552483302 0.442563905342802 0.91018313 0.88525736 prediction 0.424999104966604 Functional Loss - TDGF1 ENSG00000241186 CDS Human protein_coding chr3:46621529 chr3:46621530 nonsynonymous SNV 0.556 5 22 hm5C_associated_SNPs_87653 0 0 0 0 2 TDGF1 chr3:46621550 5'GT 46621550 Upstream 21bp
chr1 121116704 121116704 1 + G A CESC 121116701 + 121116681 121116721 41 TTTCAGCACCAAGCCAAGTACACGGAGAATAAGCTGAAGGC TTTCAGCACCAAGCCAAGTACACAGAGAATAAGCTGAAGGC < 41bp 0.761478946007386 0.548986523416332 0.41128036 0.15684426 prediction 0.424984845182107 Functional Loss - SRGAP2B;SRGAP2C ENSG00000171943 ncRNA_exonic Human protein_coding chr1:121116701 chr1:121116704 . . 0 24 hm5C_associated_SNPs_87659 0 0 1 0 1 SRGAP2B;SRGAP2C chr1:121116687 3'AG 121116687 Downstream 18bp
chr11 7586921 7586921 1 + C T BLCA 7586919 + 7586899 7586939 41 CTTGGAGATGCTGGAGCTTCCTCAGGAGAGAGCAGCCCTCC CTTGGAGATGCTGGAGCTTCCTTAGGAGAGAGCAGCCCTCC < 41bp 0.823179786835823 0.610688014554302 0.17117047 0.29296017 prediction 0.424983544563041 Functional Loss - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7586919 chr11:7586921 stopgain 1.000 0 23 hm5C_associated_SNPs_87660 0 0 1 0 1 PPFIBP2 chr11:7586998 5'GT 7586998 Upstream 78bp
chr3 112066509 112066509 1 + C T UCEC 112066507 + 112066487 112066527 41 CATGGTCTTCTGGAAGGTCCCTCGGTCAGGGATTGAAAATA CATGGTCTTCTGGAAGGTCCCTTGGTCAGGGATTGAAAATA < 41bp 0.868149192195447 0.655657918249211 0.07012898 0.008710295 prediction 0.424982547892472 Functional Loss - CD200 ENSG00000091972 CDS Human protein_coding chr3:112066507 chr3:112066509 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_87661 0 0 0 0 1 CD200 chr3:112066410 3'AG 112066410 Downstream 100bp
chr2 233620982 233620982 1 + G A SKCM 233620979 + 233620959 233620999 41 TGCTGCTGTCCTGCGATTGACAGGACGAGGAGGAGGAGGAA TGCTGCTGTCCTGCGATTGACAGAACGAGGAGGAGGAGGAA < 41bp 0.761005097971604 0.548515405693402 0.24931607 0.27608192 prediction 0.424979384556403 Functional Loss - GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233620979 chr2:233620982 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_87662 0 0 1 0 2 GIGYF2 chr2:233620933 3'AG 233620933 Downstream 50bp
chr2 233620982 233620982 1 + G A SKCM 233620979 + 233620959 233620999 41 TGCTGCTGTCCTGCGATTGACAGGACGAGGAGGAGGAGGAA TGCTGCTGTCCTGCGATTGACAGAACGAGGAGGAGGAGGAA < 41bp 0.761005097971604 0.548515405693402 0.24931607 0.27608192 prediction 0.424979384556403 Functional Loss - GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233620979 chr2:233620982 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_87662 0 0 1 0 2 GIGYF2 chr2:233621044 5'GT 233621044 Upstream 63bp
chr5 10442106 10442106 1 + G A rs112014572 10442103 + 10442083 10442123 41 TCCGAATTTCTCCCGAAGCCCGCGGAGGAGCGGGTAAGAGC TCCGAATTTCTCCCGAAGCCCGCAGAGGAGCGGGTAAGAGC < 41bp 0.754960298618057 0.5424717701704 0.16639143 0.0518353 prediction 0.424977056895314 Functional Loss - ROPN1L ENSG00000145491 UTR5 Human protein_coding chr5:10442103 chr5:10442106 . . 0 24 hm5C_associated_SNPs_87663 0 0 0 0 1 ROPN1L chr5:10442115 5'GT 10442115 Upstream 10bp
chr16 23695342 23695342 1 + C T SKCM 23695339 + 23695319 23695359 41 CATCACCTGCCTGACCATTCCACCAAGGTTTTCGATTGCTC CATCACCTGCCTGACCATTCCACTAAGGTTTTCGATTGCTC < 41bp 0.772691771670835 0.560203452739522 0.11300519 0.11573583 prediction 0.424976637862627 Functional Loss - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23695339 chr16:23695342 nonsynonymous SNV 0.909 4 24 hm5C_associated_SNPs_87664 0 0 1 0 1 PLK1 chr16:23695410 5'GT 23695410 Upstream 69bp
chr16 27441400 27441400 1 + G T LUSC 27441396 + 27441376 27441416 41 GGCCCGTGGGAGTCAGCATGCCGCGTGGCTGGGCCGCCCCC GGCCCGTGGGAGTCAGCATGCCGCTTGGCTGGGCCGCCCCC < 41bp 0.750419993547401 0.537931785575987 0.35811517 0.26225367 prediction 0.424976415942828 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27441396 chr16:27441400 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_87666 0 0 0 0 2 IL21R chr16:27441377 3'AG 27441377 Downstream 24bp
chr16 27441400 27441400 1 + G T LUSC 27441396 + 27441376 27441416 41 GGCCCGTGGGAGTCAGCATGCCGCGTGGCTGGGCCGCCCCC GGCCCGTGGGAGTCAGCATGCCGCTTGGCTGGGCCGCCCCC < 41bp 0.750419993547401 0.537931785575987 0.35811517 0.26225367 prediction 0.424976415942828 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27441396 chr16:27441400 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_87666 0 0 0 0 2 IL21R chr16:27441441 5'GT 27441441 Upstream 42bp
chr2 48818845 48818845 1 + G A SKCM 48818842 + 48818822 48818862 41 AATTAGAGCTTGGATCAGACCAAGAAATTCCCTCTGATTGG AATTAGAGCTTGGATCAGACCAAAAAATTCCCTCTGATTGG < 41bp 0.790033653442862 0.57754853970464 0.16601974 0.040562898 prediction 0.424970227476445 Functional Loss - STON1;STON1-GTF2A1L ENSG00000068781;ENSG00000243244 CDS Human other chr2:48818842 chr2:48818845 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_87668 0 0 0 0 1 STON1;STON1-GTF2A1L chr2:48818792 3'AG 48818792 Downstream 54bp
chr7 128407619 128407619 1 + G T KIRC 128407616 + 128407596 128407636 41 AACCGTGATGGGAAGATGGACAAGGAAGAGACCAAAGACTG AACCGTGATGGGAAGATGGACAATGAAGAGACCAAAGACTG < 41bp 0.712481202274993 0.338053775390685 0.24573901 0.15446487 prediction 0.424962404549986 Functional Loss - CALU ENSG00000128595 CDS Human protein_coding chr7:128407616 chr7:128407619 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_87669 0 0 1 0 1 CALU chr7:128407709 5'GT 128407709 Upstream 91bp
chr14 23306043 23306043 1 + G A ESCA 23306040 + 23306020 23306060 41 TCGGACCATGTCTCCCGCCCCAAGACCCCCCCGTTGTCTCC TCGGACCATGTCTCCCGCCCCAAAACCCCCCCGTTGTCTCC < 41bp 0.807289515618689 0.594811910091567 0.36643094 0.21743268 prediction 0.424955211054243 Functional Loss - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23306040 chr14:23306043 nonsynonymous SNV 0.970 0 24 hm5C_associated_SNPs_87673 0 0 0 0 1 MMP14 chr14:23306134 5'GT 23306134 Upstream 92bp
chr10 12131159 12131159 1 + G C LUSC 12131158 + 12131138 12131178 41 GAGGCCGTCAACCCCGTGGCCGTGGGCAAAACTCGCGGCAG GAGGCCGTCAACCCCGTGGCCCTGGGCAAAACTCGCGGCAG < 41bp 0.712477546450582 0.395843682306778 0.89195514 0.7561953 prediction 0.424955092901164 Functional Loss - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12131158 chr10:12131159 nonsynonymous SNV 0.394 1 22 hm5C_associated_SNPs_87674 0 0 1 0 1 DHTKD1 chr10:12131254 5'GT 12131254 Upstream 96bp
chr10 116698257 116698257 1 + C T CESC 116698254 + 116698234 116698274 41 GCACAAGCCCAAAGGGCCCACTTCAGCCGAGCTGCTGAATC GCACAAGCCCAAAGGGCCCACTTTAGCCGAGCTGCTGAATC < 41bp 0.736846949473146 0.524379718315975 0.2932251 0.028716296 prediction 0.424934462314342 Functional Loss - TRUB1 ENSG00000165832 CDS Human protein_coding chr10:116698254 chr10:116698257 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_87677 0 0 1 0 1 TRUB1 chr10:116698298 5'GT 116698298 Upstream 42bp
chr20 61952418 61952418 1 + G T COAD 61952414 + 61952394 61952434 41 GTCTGCCTGTTCCTGTTCCTCAGAGACCCCTGGGCCCCCAG GTCTGCCTGTTCCTGTTCCTCAGATACCCCTGGGCCCCCAG < 41bp 0.723939141871045 0.511472067797415 0.92928505 0.7399738 prediction 0.424934148147259 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61952414 chr20:61952418 nonsynonymous SNV 0.470 1 25 hm5C_associated_SNPs_87678 0 0 0 0 2 COL20A1 chr20:61952365 3'AG 61952365 Downstream 54bp
chr20 61952418 61952418 1 + G T COAD 61952414 + 61952394 61952434 41 GTCTGCCTGTTCCTGTTCCTCAGAGACCCCTGGGCCCCCAG GTCTGCCTGTTCCTGTTCCTCAGATACCCCTGGGCCCCCAG < 41bp 0.723939141871045 0.511472067797415 0.92928505 0.7399738 prediction 0.424934148147259 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61952414 chr20:61952418 nonsynonymous SNV 0.470 1 25 hm5C_associated_SNPs_87678 0 0 0 0 2 COL20A1 chr20:61952451 5'GT 61952451 Upstream 34bp
chr19 49132913 49132913 1 + C T UCEC 49132911 + 49132891 49132931 41 GCCTAGAGCCGCTCACACCACGCGGCGTGCTCACAGTGGAC GCCTAGAGCCGCTCACACCACGTGGCGTGCTCACAGTGGAC < 41bp 0.771264765485185 0.558798278961282 0.33507288 0.40843067 prediction 0.424932973047807 Functional Loss - SPHK2 ENSG00000063176 CDS Human protein_coding chr19:49132911 chr19:49132913 synonymous SNV . 0 23 hm5C_associated_SNPs_87679 0 0 1 0 1 SPHK2 chr19:49132983 5'GT 49132983 Upstream 71bp
chr16 67913173 67913173 1 + C T UCEC 67913170 + 67913150 67913190 41 TGGAGCCGGTGCCATGGAGTCTGCGGCCGGTGTGCTCATCA TGGAGCCGGTGCCATGGAGTCTGTGGCCGGTGTGCTCATCA < 41bp 0.737900978495889 0.525443263835249 0.3974889 0.16186547 prediction 0.42491542932128 Functional Loss - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67913170 chr16:67913173 nonsynonymous SNV 0.719 2 24 hm5C_associated_SNPs_87682 0 0 1 0 2 EDC4 chr16:67913140 3'AG 67913140 Downstream 34bp
chr16 67913173 67913173 1 + C T UCEC 67913170 + 67913150 67913190 41 TGGAGCCGGTGCCATGGAGTCTGCGGCCGGTGTGCTCATCA TGGAGCCGGTGCCATGGAGTCTGTGGCCGGTGTGCTCATCA < 41bp 0.737900978495889 0.525443263835249 0.3974889 0.16186547 prediction 0.42491542932128 Functional Loss - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67913170 chr16:67913173 nonsynonymous SNV 0.719 2 24 hm5C_associated_SNPs_87682 0 0 1 0 2 EDC4 chr16:67913212 5'GT 67913212 Upstream 40bp
chr1 150444378 150444378 1 + C T STAD 150444376 + 150444356 150444396 41 CAGAACACCCTTGCCGCTCCCACGGGTCACCCACCCACGTC CAGAACACCCTTGCCGCTCCCATGGGTCACCCACCCACGTC < 41bp 0.833956353506985 0.621504750153631 0.9074128 0.86176544 prediction 0.424903206706708 Functional Loss - RPRD2 ENSG00000163125 CDS Human protein_coding chr1:150444376 chr1:150444378 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_87685 0 0 1 0 1 RPRD2 chr1:150444359 3'AG 150444359 Downstream 20bp
chr12 660177 660177 1 + C T KIRP 660174 + 660154 660194 41 TGGTGGATGGGCTTCCTCTGCAGCGCTACCAGGGACTCCGG TGGTGGATGGGCTTCCTCTGCAGTGCTACCAGGGACTCCGG < 41bp 0.717197638534529 0.50474650155885 0.7642509 0.66804695 prediction 0.424902273951358 Functional Loss - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:660174 chr12:660177 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_87686 0 0 1 0 2 B4GALNT3 chr12:660088 3'AG 660088 Downstream 90bp
chr12 660177 660177 1 + C T KIRP 660174 + 660154 660194 41 TGGTGGATGGGCTTCCTCTGCAGCGCTACCAGGGACTCCGG TGGTGGATGGGCTTCCTCTGCAGTGCTACCAGGGACTCCGG < 41bp 0.717197638534529 0.50474650155885 0.7642509 0.66804695 prediction 0.424902273951358 Functional Loss - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:660174 chr12:660177 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_87686 0 0 1 0 2 B4GALNT3 chr12:660197 5'GT 660197 Upstream 21bp
chr2 219268081 219268081 1 + C T UCEC 219268078 + 219268058 219268098 41 TGAGCCGGTTGGGTCGAGACCTGCGGCGGGTGCTCATCCTG TGAGCCGGTTGGGTCGAGACCTGTGGCGGGTGCTCATCCTG < 41bp 0.741061802203469 0.528611139914276 0.12810335 0.11294907 prediction 0.424901324578386 Functional Loss - CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219268078 chr2:219268081 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_87687 0 0 1 0 1 CTDSP1 chr2:219268140 5'GT 219268140 Upstream 60bp
chr17 38172758 38172758 1 + C T COAD 38172756 + 38172736 38172776 41 AGGCAGGCTGCTTGAGCCAACTCCATAGCGGCCTTTTCCTC AGGCAGGCTGCTTGAGCCAACTTCATAGCGGCCTTTTCCTC < 41bp 0.86278387606729 0.650336201591274 0.9737321 0.8677539 prediction 0.424895348952032 Functional Loss - CSF3 ENSG00000108342 CDS Human protein_coding chr17:38172756 chr17:38172758 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_87688 0 0 0 0 1 CSF3 chr17:38172738 3'AG 38172738 Downstream 21bp
chr8 2021511 2021511 1 + G T LGG 2021507 + 2021487 2021527 41 AGCCACCTGCACAAGGACGACGAGGGCCTGTACACCCTGCG AGCCACCTGCACAAGGACGACGAGTGCCTGTACACCCTGCG < 41bp 0.715564900143253 0.503118257383026 0.81931424 0.49448925 prediction 0.424893285520454 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2021507 chr8:2021511 nonsynonymous SNV 0.935 4 25 hm5C_associated_SNPs_87691 0 0 0 0 2 MYOM2 chr8:2021419 3'AG 2021419 Downstream 93bp
chr8 2021511 2021511 1 + G T LGG 2021507 + 2021487 2021527 41 AGCCACCTGCACAAGGACGACGAGGGCCTGTACACCCTGCG AGCCACCTGCACAAGGACGACGAGTGCCTGTACACCCTGCG < 41bp 0.715564900143253 0.503118257383026 0.81931424 0.49448925 prediction 0.424893285520454 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2021507 chr8:2021511 nonsynonymous SNV 0.935 4 25 hm5C_associated_SNPs_87691 0 0 0 0 2 MYOM2 chr8:2021580 5'GT 2021580 Upstream 70bp
chr2 44079768 44079768 1 + G A UCEC 44079765 + 44079745 44079785 41 TATTCTCGACGAACCCACCTCTGGGCTCGACAGCTTCACAG TATTCTCGACGAACCCACCTCTGAGCTCGACAGCTTCACAG < 41bp 0.816447102140659 0.604000486266226 0.42700452 0.14772409 prediction 0.424893231748865 Functional Loss - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44079765 chr2:44079768 nonsynonymous SNV 0.968 4 24 hm5C_associated_SNPs_87692 0 0 0 0 1 ABCG8 chr2:44079738 3'AG 44079738 Downstream 31bp
chr2 119749416 119749416 1 + G A SKCM 119749413 + 119749393 119749433 41 GGCAGGTCCCAAGGGAGCCCCTGGACAAGCTGGCCAGAAGG GGCAGGTCCCAAGGGAGCCCCTGAACAAGCTGGCCAGAAGG < 41bp 0.824109844327002 0.611666968615935 0.8918578 0.5745413 prediction 0.424885751422134 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119749413 chr2:119749416 nonsynonymous SNV 0.210 5 24 hm5C_associated_SNPs_87694 0 0 0 0 2 MARCO chr2:119749353 3'AG 119749353 Downstream 64bp
chr2 119749416 119749416 1 + G A SKCM 119749413 + 119749393 119749433 41 GGCAGGTCCCAAGGGAGCCCCTGGACAAGCTGGCCAGAAGG GGCAGGTCCCAAGGGAGCCCCTGAACAAGCTGGCCAGAAGG < 41bp 0.824109844327002 0.611666968615935 0.8918578 0.5745413 prediction 0.424885751422134 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119749413 chr2:119749416 nonsynonymous SNV 0.210 5 24 hm5C_associated_SNPs_87694 0 0 0 0 2 MARCO chr2:119749451 5'GT 119749451 Upstream 36bp
chr12 93155535 93155535 1 + G A rs1504907 93155532 + 93155512 93155552 41 CTCTTTTTTTCCTCAGAAAGCACGAGATTCCTAGATGTTTA CTCTTTTTTTCCTCAGAAAGCACAAGATTCCTAGATGTTTA < 41bp 0.750439675881665 0.53799783837532 0.09085986 0.027670085 prediction 0.42488367501269 Functional Loss - PLEKHG7 ENSG00000187510 CDS Human protein_coding chr12:93155532 chr12:93155535 synonymous SNV . 0 24 hm5C_associated_SNPs_87695 0 1 0 0 2 PLEKHG7 chr12:93155528 3'AG 93155528 Downstream 8bp
chr12 93155535 93155535 1 + G A rs1504907 93155532 + 93155512 93155552 41 CTCTTTTTTTCCTCAGAAAGCACGAGATTCCTAGATGTTTA CTCTTTTTTTCCTCAGAAAGCACAAGATTCCTAGATGTTTA < 41bp 0.750439675881665 0.53799783837532 0.09085986 0.027670085 prediction 0.42488367501269 Functional Loss - PLEKHG7 ENSG00000187510 CDS Human protein_coding chr12:93155532 chr12:93155535 synonymous SNV . 0 24 hm5C_associated_SNPs_87695 0 1 0 0 2 PLEKHG7 chr12:93155607 5'GT 93155607 Upstream 73bp
chr8 120431495 120431495 1 + C T STAD 120431492 + 120431472 120431512 41 ATGGGGTTCTCCACCCGGGTCACCAATAGGAACCGTCAATG ATGGGGTTCTCCACCCGGGTCACTAATAGGAACCGTCAATG < 41bp 0.77186923164408 0.559428659597017 0.09370461 0.113227755 prediction 0.424881144094125 Functional Loss - NOV ENSG00000136999 CDS Human protein_coding chr8:120431492 chr8:120431495 synonymous SNV . 0 24 hm5C_associated_SNPs_87696 0 0 0 0 1 NOV chr8:120431585 5'GT 120431585 Upstream 91bp
chr16 54966435 54966435 1 + G T UCEC 54966433 + 54966413 54966453 41 TCTCCCTACGACCACACACCCGGCATGGCGGGCTCCTTGGG TCTCCCTACGACCACACACCCGTCATGGCGGGCTCCTTGGG < 41bp 0.913414361899761 0.700973854524844 0.8688398 0.21593031 prediction 0.424881014749833 Functional Loss - IRX5 ENSG00000176842 CDS Human protein_coding chr16:54966433 chr16:54966435 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_87697 0 0 0 0 1 IRX5 chr16:54966410 3'AG 54966410 Downstream 26bp
chr2 39006172 39006172 1 + G T COAD 39006169 + 39006149 39006189 41 AGAAAGGCCCCTTAGAATGGCAAGATTACATTTACAAAGAG AGAAAGGCCCCTTAGAATGGCAATATTACATTTACAAAGAG < 41bp 0.712438493014341 0.329251947126874 0.17084122 0.12688866 prediction 0.424876986028683 Functional Loss - GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39006169 chr2:39006172 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_87698 0 0 1 0 2 GEMIN6 chr2:39006114 3'AG 39006114 Downstream 59bp
chr2 39006172 39006172 1 + G T COAD 39006169 + 39006149 39006189 41 AGAAAGGCCCCTTAGAATGGCAAGATTACATTTACAAAGAG AGAAAGGCCCCTTAGAATGGCAATATTACATTTACAAAGAG < 41bp 0.712438493014341 0.329251947126874 0.17084122 0.12688866 prediction 0.424876986028683 Functional Loss - GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39006169 chr2:39006172 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_87698 0 0 1 0 2 GEMIN6 chr2:39006260 5'GT 39006260 Upstream 89bp
chr5 76332466 76332466 1 + C T LAML 76332463 + 76332443 76332483 41 TTTGAGAGCTGCAGCAGAAGCGGCTGTATCACAGACTGGAT TTTGAGAGCTGCAGCAGAAGCGGTTGTATCACAGACTGGAT < 41bp 0.7271201681585 0.514681721909607 0.6528312 0.7265054 prediction 0.424876892497786 Functional Loss - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76332463 chr5:76332466 nonsynonymous SNV 0.974 5 24 hm5C_associated_SNPs_87699 0 0 1 1 2 AGGF1 chr5:76332381 3'AG 76332381 Downstream 86bp
chr5 76332466 76332466 1 + C T LAML 76332463 + 76332443 76332483 41 TTTGAGAGCTGCAGCAGAAGCGGCTGTATCACAGACTGGAT TTTGAGAGCTGCAGCAGAAGCGGTTGTATCACAGACTGGAT < 41bp 0.7271201681585 0.514681721909607 0.6528312 0.7265054 prediction 0.424876892497786 Functional Loss - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76332463 chr5:76332466 nonsynonymous SNV 0.974 5 24 hm5C_associated_SNPs_87699 0 0 1 1 2 AGGF1 chr5:76332545 5'GT 76332545 Upstream 80bp
chr9 101589095 101589095 1 + C T BRCA 101589092 + 101589072 101589112 41 CTGCCCAAGGTGCGCCTGATCCGCGCCAACAAGAGAGAGGG CTGCCCAAGGTGCGCCTGATCCGTGCCAACAAGAGAGAGGG < 41bp 0.727183233452686 0.514746976667609 0.77846336 0.15884948 prediction 0.424872513570155 Functional Loss - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101589092 chr9:101589095 synonymous SNV . 0 24 hm5C_associated_SNPs_87700 0 0 1 0 1 GALNT12 chr9:101589034 3'AG 101589034 Downstream 62bp
chr12 13232857 13232857 1 + C T STAD 13232855 + 13232835 13232875 41 ACTAATGGAGGGCCAGATGGCTCAGCTACAGGAGTCCACCC ACTAATGGAGGGCCAGATGGCTTAGCTACAGGAGTCCACCC < 41bp 0.712435272258767 0.432772485363457 0.10656211 0.066998094 prediction 0.424870544517535 Functional Loss - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13232855 chr12:13232857 stopgain 0.483 0 23 hm5C_associated_SNPs_87701 0 0 0 2 2 FAM234B chr12:13232766 3'AG 13232766 Downstream 92bp
chr12 13232857 13232857 1 + C T STAD 13232855 + 13232835 13232875 41 ACTAATGGAGGGCCAGATGGCTCAGCTACAGGAGTCCACCC ACTAATGGAGGGCCAGATGGCTTAGCTACAGGAGTCCACCC < 41bp 0.712435272258767 0.432772485363457 0.10656211 0.066998094 prediction 0.424870544517535 Functional Loss - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13232855 chr12:13232857 stopgain 0.483 0 23 hm5C_associated_SNPs_87701 0 0 0 2 2 FAM234B chr12:13232943 5'GT 13232943 Upstream 87bp
chr1 167064130 167064130 1 + G T SARC 167064127 + 167064107 167064147 41 AGAGGAGGAGCAGGTAGTCCCAAGCGAGGAGGACGAAGCCA AGAGGAGGAGCAGGTAGTCCCAATCGAGGAGGACGAAGCCA < 41bp 0.712435123318251 0.310637912380723 0.39505005 0.058522254 prediction 0.424870246636502 Functional Loss - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167064127 chr1:167064130 nonsynonymous SNV 0.441 1 24 hm5C_associated_SNPs_87703 0 0 0 0 1 DUSP27 chr1:167064196 5'GT 167064196 Upstream 67bp
chr19 49261190 49261190 1 + C T SKCM 49261187 + 49261167 49261207 41 ATCCTGTTTTTGTCCCCTAGCTCCACTTTGACCCTGAGGCC ATCCTGTTTTTGTCCCCTAGCTCTACTTTGACCCTGAGGCC < 41bp 0.721000127901285 0.508566219769517 0.2112827 0.24279639 prediction 0.424867816263536 Functional Loss - FGF21 ENSG00000105550 CDS Human protein_coding chr19:49261187 chr19:49261190 nonsynonymous SNV 0.140 0 24 hm5C_associated_SNPs_87705 0 0 0 0 1 FGF21 chr19:49261187 3'AG 49261187 Downstream 4bp
chr3 148586711 148586711 1 + T C LUAD 148586710 + 148586690 148586730 41 TTATCTCTGCAGCTTGACTTCTGGTATCCAGGTGCCACCCA TTATCTCTGCAGCTTGACTTCCGGTATCCAGGTGCCACCCA < 41bp 0.781733924394688 0.569300741719912 0.04403639 0.23642433 prediction 0.424866365349552 Functional Loss - CPA3 ENSG00000163751 CDS Human protein_coding chr3:148586710 chr3:148586711 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_87706 0 0 0 0 1 CPA3 chr3:148586702 3'AG 148586702 Downstream 10bp
chr16 29853109 29853109 1 + G A UCEC 29853106 + 29853086 29853126 41 AGACCCGTGTGGTCAGCTACCGCGTGCCCCACAACGCTGCG AGACCCGTGTGGTCAGCTACCGCATGCCCCACAACGCTGCG < 41bp 0.806384146050906 0.593955019648662 0.73811364 0.64819384 prediction 0.424858252804488 Functional Loss - MVP ENSG00000013364 CDS Human protein_coding chr16:29853106 chr16:29853109 nonsynonymous SNV 0.529 4 24 hm5C_associated_SNPs_87707 0 0 1 0 1 MVP chr16:29853161 5'GT 29853161 Upstream 53bp
chr14 57070568 57070568 1 + C T UCEC 57070565 + 57070545 57070585 41 ATCTGCTGGAGGAATCCTTGCTGCGGGGGTGTTTTCATTTT ATCTGCTGGAGGAATCCTTGCTGTGGGGGTGTTTTCATTTT < 41bp 0.741501307342721 0.529073404794517 0.21724299 0.16945994 prediction 0.424855805096409 Functional Loss - TMEM260 ENSG00000070269 CDS Human protein_coding chr14:57070565 chr14:57070568 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_87708 0 0 0 0 1 TMEM260 chr14:57070533 3'AG 57070533 Downstream 36bp
chr3 196050834 196050834 1 - C G rs35643777 196050838 - 196050818 196050858 41 TATGACCGTTCGCTCTGGAACTCCGTCTGCCTGGAGCCCTC TATGACCGTTCGCTCTGGAACTCCCTCTGCCTGGAGCCCTC < 41bp 0.71242613762718 0.417513672236083 0.22960684 0.06298697 prediction 0.42485227525436 Functional Loss - TM4SF19 ENSG00000145107;ENSG00000273331 CDS Human other chr3:196050838 chr3:196050834 nonsynonymous SNV 0.988 3 25 hm5C_associated_SNPs_87710 0 0 0 0 1 TM4SF19 chr3:196050868 3'AG 196050868 Downstream 35bp
chr7 138872202 138872202 1 + G T LUSC 138872200 + 138872180 138872220 41 CTTTTGATGTCCTTGAGAGGCTGGATCCTAACCCTGAATAT CTTTTGATGTCCTTGAGAGGCTTGATCCTAACCCTGAATAT < 41bp 0.899882116897058 0.687457907036856 0.20605665 0.056591243 prediction 0.424848419720404 Functional Loss - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138872200 chr7:138872202 synonymous SNV . 0 23 hm5C_associated_SNPs_87712 0 0 0 0 2 TTC26 chr7:138872152 3'AG 138872152 Downstream 51bp
chr7 138872202 138872202 1 + G T LUSC 138872200 + 138872180 138872220 41 CTTTTGATGTCCTTGAGAGGCTGGATCCTAACCCTGAATAT CTTTTGATGTCCTTGAGAGGCTTGATCCTAACCCTGAATAT < 41bp 0.899882116897058 0.687457907036856 0.20605665 0.056591243 prediction 0.424848419720404 Functional Loss - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138872200 chr7:138872202 synonymous SNV . 0 23 hm5C_associated_SNPs_87712 0 0 0 0 2 TTC26 chr7:138872285 5'GT 138872285 Upstream 84bp
chr5 131607781 131607781 1 + C T UCEC 131607778 + 131607758 131607798 41 GAGTGCTTCATGTGCAGTGACTGCGGCCTGAACCTCAAGCA GAGTGCTTCATGTGCAGTGACTGTGGCCTGAACCTCAAGCA < 41bp 0.712859160316109 0.500440510299614 0.6197622 0.5081704 prediction 0.42483730003299 Functional Loss - PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131607778 chr5:131607781 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_87716 0 0 0 0 1 PDLIM4 chr5:131607718 3'AG 131607718 Downstream 64bp
chr1 165865569 165865569 1 + G T UCEC 165865565 + 165865545 165865585 41 GCGGACACCCGGCTCTCACGCAGAGGTGCGTTCTAAAAGCC GCGGACACCCGGCTCTCACGCAGATGTGCGTTCTAAAAGCC < 41bp 0.714273983487086 0.501857909437447 0.91210103 0.8683579 prediction 0.424832148099279 Functional Loss - UCK2 ENSG00000143179 CDS Human protein_coding chr1:165865565 chr1:165865569 nonsynonymous SNV 0.938 2 25 hm5C_associated_SNPs_87717 0 0 1 0 1 UCK2 chr1:165865569 5'GT 165865569 Upstream 1bp
chr5 78376674 78376674 1 + G A SKCM 78376671 + 78376651 78376691 41 CAACAGCTAGAAGTTTTTGCCTGGAAAAATGTGGACTTCTT CAACAGCTAGAAGTTTTTGCCTGAAAAAATGTGGACTTCTT < 41bp 0.712402375396316 0.491185805261412 0.17383593 0.035045326 prediction 0.424804750792633 Functional Loss - BHMT2 ENSG00000132840 CDS Human protein_coding chr5:78376671 chr5:78376674 stopgain 0.403 1 24 hm5C_associated_SNPs_87724 0 0 0 0 1 BHMT2 chr5:78376701 5'GT 78376701 Upstream 28bp
chr1 41303411 41303411 1 + C T COAD 41303409 + 41303389 41303429 41 GGCGACAAGGGGCCCTCCGACGCGGAGGTGGTGGATGAAAT GGCGACAAGGGGCCCTCCGACGTGGAGGTGGTGGATGAAAT < 41bp 0.834711487557791 0.622311373719143 0.5458382 0.46099442 prediction 0.424800227677296 Functional Loss - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41303409 chr1:41303411 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_87726 0 0 0 0 1 KCNQ4 chr1:41303466 5'GT 41303466 Upstream 56bp
chr11 59831748 59831748 1 + G A LGG 59831745 + 59831725 59831765 41 TTTCAAACAGTTCTGTAGTTCAGGAACCTTGTCTGTTGTAG TTTCAAACAGTTCTGTAGTTCAGAAACCTTGTCTGTTGTAG < 41bp 0.75916089955392 0.546766923308699 0.8617717 0.43296438 prediction 0.424787952490442 Functional Loss - MS4A3 ENSG00000149516 CDS Human protein_coding chr11:59831745 chr11:59831748 nonsynonymous SNV 0.322 2 24 hm5C_associated_SNPs_87728 0 0 1 0 2 MS4A3 chr11:59831735 3'AG 59831735 Downstream 14bp
chr11 59831748 59831748 1 + G A LGG 59831745 + 59831725 59831765 41 TTTCAAACAGTTCTGTAGTTCAGGAACCTTGTCTGTTGTAG TTTCAAACAGTTCTGTAGTTCAGAAACCTTGTCTGTTGTAG < 41bp 0.75916089955392 0.546766923308699 0.8617717 0.43296438 prediction 0.424787952490442 Functional Loss - MS4A3 ENSG00000149516 CDS Human protein_coding chr11:59831745 chr11:59831748 nonsynonymous SNV 0.322 2 24 hm5C_associated_SNPs_87728 0 0 1 0 2 MS4A3 chr11:59831791 5'GT 59831791 Upstream 44bp
chr1 119683254 119683254 1 - G A CESC 119683256 - 119683236 119683276 41 CTTCTCAAGATGGCGCTGCACTCAATGCGGAAAGCGCGTGA CTTCTCAAGATGGCGCTGCACTTAATGCGGAAAGCGCGTGA < 41bp 0.848803422346921 0.636410709061979 0.07360262 0.09022656 prediction 0.424785426569884 Functional Loss - WARS2 ENSG00000116874 CDS Human protein_coding chr1:119683256 chr1:119683254 nonsynonymous SNV 0.372 0 23 hm5C_associated_SNPs_87730 0 0 1 0 1 WARS2 chr1:119683178 5'GT 119683178 Upstream 77bp
chr14 70478250 70478250 1 + G T HNSC 70478246 + 70478226 70478266 41 CGACGCCAGGGCCAAGACTACAGAGGCGGATGACCCCTTCA CGACGCCAGGGCCAAGACTACAGATGCGGATGACCCCTTCA < 41bp 0.728174124192721 0.515781451933256 0.5654224 0.2307753 prediction 0.42478534451893 Functional Loss - SMOC1 ENSG00000198732 CDS Human protein_coding chr14:70478246 chr14:70478250 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_87731 0 0 1 0 2 SMOC1 chr14:70478202 3'AG 70478202 Downstream 49bp
chr14 70478250 70478250 1 + G T HNSC 70478246 + 70478226 70478266 41 CGACGCCAGGGCCAAGACTACAGAGGCGGATGACCCCTTCA CGACGCCAGGGCCAAGACTACAGATGCGGATGACCCCTTCA < 41bp 0.728174124192721 0.515781451933256 0.5654224 0.2307753 prediction 0.42478534451893 Functional Loss - SMOC1 ENSG00000198732 CDS Human protein_coding chr14:70478246 chr14:70478250 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_87731 0 0 1 0 2 SMOC1 chr14:70478284 5'GT 70478284 Upstream 35bp
chr12 29486613 29486613 1 + C T LUAD 29486610 + 29486590 29486630 41 AATACTGCCCTCTTCCTTATCGCCTGGCGCCTTCTCATTGC AATACTGCCCTCTTCCTTATCGCTTGGCGCCTTCTCATTGC < 41bp 0.712388340470104 0.496612293904485 0.337057 0.11057714 prediction 0.424776680940207 Functional Loss - FAR2 ENSG00000064763 CDS Human protein_coding chr12:29486610 chr12:29486613 synonymous SNV . 0 24 hm5C_associated_SNPs_87734 0 0 0 0 1 FAR2 chr12:29486565 3'AG 29486565 Downstream 49bp
chr1 158151364 158151364 1 + G T LUSC 158151360 + 158151340 158151380 41 CTGCAGACGCACAGCTGGAGCAACGACTCGGACACCGTCCG CTGCAGACGCACAGCTGGAGCAACTACTCGGACACCGTCCG < 41bp 0.726194061902498 0.513806806425345 0.14562738 0.6485421 prediction 0.424774510954305 Functional Loss - CD1D ENSG00000158473 CDS Human protein_coding chr1:158151360 chr1:158151364 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_87736 0 0 0 0 1 CD1D chr1:158151280 3'AG 158151280 Downstream 85bp
chr2 120461255 120461255 1 + G A rs537474859 120461252 + 120461232 120461272 41 GGTCCCATGCTCCGGATCACCCCGACTCCCTTCCCCTCTGG GGTCCCATGCTCCGGATCACCCCAACTCCCTTCCCCTCTGG < 41bp 0.780828008207668 0.568442748435096 0.33820474 0.3704925 prediction 0.424770519545145 Functional Loss - TMEM177;PTPN4 ENSG00000229326;ENSG00000088179 intergenic Human other chr2:120461252 chr2:120461255 . . 0 24 hm5C_associated_SNPs_87738 0 0 0 0 1 TMEM177;PTPN4 chr2:120461196 3'AG 120461196 Downstream 60bp
chr5 126783373 126783373 1 + G A UCEC 126783370 + 126783350 126783390 41 AACAGGGACAGGATGACTGTCACGAAGGTGAGAGGAATTGG AACAGGGACAGGATGACTGTCACAAAGGTGAGAGGAATTGG < 41bp 0.787894487054552 0.575509981393339 0.28141302 0.1871498 prediction 0.424769011322426 Functional Loss - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126783370 chr5:126783373 synonymous SNV . 0 24 hm5C_associated_SNPs_87739 0 0 0 0 1 MEGF10 chr5:126783376 5'GT 126783376 Upstream 4bp
chr22 20040099 20040099 1 + G A CESC 20040096 + 20040076 20040116 41 GCCGCAGCTGGACTGGCAGGCCCGAGGGCGAGGTAAGGCGA GCCGCAGCTGGACTGGCAGGCCCAAGGGCGAGGTAAGGCGA < 41bp 0.769523906594913 0.557141932619476 0.39584225 0.42767006 prediction 0.424763947950874 Functional Loss - TANGO2 ENSG00000183597 CDS Human protein_coding chr22:20040096 chr22:20040099 nonsynonymous SNV 0.024 0 24 hm5C_associated_SNPs_87740 0 0 1 0 1 TANGO2 chr22:20040107 5'GT 20040107 Upstream 9bp
chr5 138266583 138266583 1 + G T COAD 138266581 + 138266561 138266601 41 TGCCAAGAAAATTGCTGAGGCAGGATCCAGGATGGACAAGC TGCCAAGAAAATTGCTGAGGCATGATCCAGGATGGACAAGC < 41bp 0.712381729618349 0.370159130757665 0.8016429 0.20409325 prediction 0.424763459236697 Functional Loss - CTNNA1 ENSG00000044115 CDS Human protein_coding chr5:138266581 chr5:138266583 stopgain 0.996 1 23 hm5C_associated_SNPs_87741 0 0 1 0 2 CTNNA1 chr5:138266519 3'AG 138266519 Downstream 65bp
chr5 138266583 138266583 1 + G T COAD 138266581 + 138266561 138266601 41 TGCCAAGAAAATTGCTGAGGCAGGATCCAGGATGGACAAGC TGCCAAGAAAATTGCTGAGGCATGATCCAGGATGGACAAGC < 41bp 0.712381729618349 0.370159130757665 0.8016429 0.20409325 prediction 0.424763459236697 Functional Loss - CTNNA1 ENSG00000044115 CDS Human protein_coding chr5:138266581 chr5:138266583 stopgain 0.996 1 23 hm5C_associated_SNPs_87741 0 0 1 0 2 CTNNA1 chr5:138266624 5'GT 138266624 Upstream 42bp
chr4 158057786 158057786 1 + G A SKCM 158057783 + 158057763 158057803 41 ATGAAAAAAGTGCCAATTTTCATGATGTGACCCAGGAAAAC ATGAAAAAAGTGCCAATTTTCATAATGTGACCCAGGAAAAC < 41bp 0.712381611239465 0.491090088799903 0.22826982 0.1369665 prediction 0.424763222478929 Functional Loss - GLRB ENSG00000109738 CDS Human protein_coding chr4:158057783 chr4:158057786 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_87742 0 0 1 0 1 GLRB chr4:158057850 5'GT 158057850 Upstream 65bp
chr2 238990409 238990409 1 + G A UCEC 238990406 + 238990386 238990426 41 AGGCAGAGGTGGACGACATCCTCGCGGCAGTCCGCCCGACC AGGCAGAGGTGGACGACATCCTCACGGCAGTCCGCCCGACC < 41bp 0.815662119014688 0.603280973465307 0.105163366 0.047817975 prediction 0.424762291098763 Functional Loss - SCLY ENSG00000132330 CDS Human protein_coding chr2:238990406 chr2:238990409 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_87743 0 0 1 0 2 SCLY chr2:238990350 3'AG 238990350 Downstream 60bp
chr2 238990409 238990409 1 + G A UCEC 238990406 + 238990386 238990426 41 AGGCAGAGGTGGACGACATCCTCGCGGCAGTCCGCCCGACC AGGCAGAGGTGGACGACATCCTCACGGCAGTCCGCCCGACC < 41bp 0.815662119014688 0.603280973465307 0.105163366 0.047817975 prediction 0.424762291098763 Functional Loss - SCLY ENSG00000132330 CDS Human protein_coding chr2:238990406 chr2:238990409 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_87743 0 0 1 0 2 SCLY chr2:238990477 5'GT 238990477 Upstream 69bp
chr5 156679642 156679642 1 + C T BLCA 156679640 + 156679620 156679660 41 CCAGAAGATCGGCCAGCCTTCTCCAGACTGCTGCGTCAACT CCAGAAGATCGGCCAGCCTTCTTCAGACTGCTGCGTCAACT < 41bp 0.712380003118092 0.418697588962148 0.9415783 0.483926 prediction 0.424760006236185 Functional Loss - ITK ENSG00000113263 CDS Human protein_coding chr5:156679640 chr5:156679642 nonsynonymous SNV 0.628 2 23 hm5C_associated_SNPs_87744 0 0 0 0 1 ITK chr5:156679617 3'AG 156679617 Downstream 26bp
chr16 71674872 71674872 1 - G A UCEC 71674874 - 71674854 71674894 41 ACTGTAACTTCCGGGCTGTTCTCGGCTGCCTTTGTAGCGCT ACTGTAACTTCCGGGCTGTTCTTGGCTGCCTTTGTAGCGCT < 41bp 0.712379245590553 0.450608511115002 0.39320272 0.11214736 prediction 0.424758491181107 Functional Loss - MARVELD3 ENSG00000040199;ENSG00000140832 CDS Human protein_coding chr16:71674874 chr16:71674872 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_87745 0 0 0 0 1 MARVELD3 chr16:71674943 3'AG 71674943 Downstream 72bp
chr6 47688979 47688979 1 + G T rs115743582 47688976 + 47688956 47688996 41 TCTCATGGATGTCCTGAGACCAAGAGGGGAGATCCAGGAGA TCTCATGGATGTCCTGAGACCAATAGGGGAGATCCAGGAGA < 41bp 0.920678673128178 0.708304065391011 0.83585906 0.25896782 prediction 0.424749215474335 Functional Loss - ADGRF4 ENSG00000153294 UTR3 Human protein_coding chr6:47688976 chr6:47688979 . . 0 24 hm5C_associated_SNPs_87750 0 0 0 0 1 ADGRF4 chr6:47688945 3'AG 47688945 Downstream 35bp
chr15 57524985 57524985 1 + A C UCEC 57524981 + 57524961 57525001 41 CCAATGTCCAGCTTTCATCGCGGCAGTACCAGCAGTTCACC CCAATGTCCAGCTTTCATCGCGGCCGTACCAGCAGTTCACC < 41bp 0.712372448290802 0.322165225698155 0.6703904 0.80608636 prediction 0.424744896581603 Functional Loss - TCF12 ENSG00000140262 CDS Human protein_coding chr15:57524981 chr15:57524985 nonsynonymous SNV 0.916 2 25 hm5C_associated_SNPs_87751 0 0 1 0 1 TCF12 chr15:57525054 5'GT 57525054 Upstream 70bp
chr17 73487500 73487500 1 + C T rs138600560 73487497 + 73487477 73487517 41 CACAGCAGCCATGAGGACCTCACCGATGGCCTATCCACCCG CACAGCAGCCATGAGGACCTCACTGATGGCCTATCCACCCG < 41bp 0.731874859671451 0.51950514137883 0.14257348 0.119864345 prediction 0.424739436585242 Functional Loss - TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73487497 chr17:73487500 synonymous SNV . 0 24 hm5C_associated_SNPs_87752 0 0 0 0 2 TMEM94 chr17:73487536 5'GT 73487536 Upstream 37bp
chr17 73487500 73487500 1 + C T rs138600560 73487497 + 73487477 73487517 41 CACAGCAGCCATGAGGACCTCACCGATGGCCTATCCACCCG CACAGCAGCCATGAGGACCTCACTGATGGCCTATCCACCCG < 41bp 0.731874859671451 0.51950514137883 0.14257348 0.119864345 prediction 0.424739436585242 Functional Loss - TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73487497 chr17:73487500 synonymous SNV . 0 24 hm5C_associated_SNPs_87752 0 0 0 0 2 TMEM94 chr17:73487548 5'GT 73487548 Upstream 49bp
chr5 94749823 94749823 1 + G A COAD 94749820 + 94749800 94749840 41 GCTTTCGAAAAGAGGAATCGCTCGCCAGGAAGTTACTGGAA GCTTTCGAAAAGAGGAATCGCTCACCAGGAAGTTACTGGAA < 41bp 0.729554485057792 0.517185589476297 0.029714584 0.045092106 prediction 0.424737791162989 Functional Loss - FAM81B ENSG00000153347 CDS Human protein_coding chr5:94749820 chr5:94749823 nonsynonymous SNV 0.653 2 24 hm5C_associated_SNPs_87753 0 0 0 0 1 FAM81B chr5:94749894 5'GT 94749894 Upstream 72bp
chr19 32971376 32971376 1 + C T UCEC 32971373 + 32971353 32971393 41 CTAAGGTCCTTCGGCACTGACTACGTAATCCTGGAAGACAG CTAAGGTCCTTCGGCACTGACTATGTAATCCTGGAAGACAG < 41bp 0.712368464274991 0.488399871713611 0.081943125 0.077165574 prediction 0.424736928549982 Functional Loss - DPY19L3 ENSG00000178904 CDS Human protein_coding chr19:32971373 chr19:32971376 synonymous SNV . 0 24 hm5C_associated_SNPs_87754 0 0 1 0 2 DPY19L3 chr19:32971305 3'AG 32971305 Downstream 72bp
chr19 32971376 32971376 1 + C T UCEC 32971373 + 32971353 32971393 41 CTAAGGTCCTTCGGCACTGACTACGTAATCCTGGAAGACAG CTAAGGTCCTTCGGCACTGACTATGTAATCCTGGAAGACAG < 41bp 0.712368464274991 0.488399871713611 0.081943125 0.077165574 prediction 0.424736928549982 Functional Loss - DPY19L3 ENSG00000178904 CDS Human protein_coding chr19:32971373 chr19:32971376 synonymous SNV . 0 24 hm5C_associated_SNPs_87754 0 0 1 0 2 DPY19L3 chr19:32971463 5'GT 32971463 Upstream 88bp
chrX 153047046 153047046 1 + G C LUAD 153047042 + 153047022 153047062 41 CTGGGCTGGGGCCACTTCTCCACCGTCTGGCTCTGCTGGGA CTGGGCTGGGGCCACTTCTCCACCCTCTGGCTCTGCTGGGA < 41bp 0.712367163620321 0.406319322182091 0.07580063 0.19494304 prediction 0.424734327240643 Functional Loss - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153047042 chrX:153047046 nonsynonymous SNV 0.976 4 25 hm5C_associated_SNPs_87755 0 0 0 0 2 SRPK3 chrX:153046960 3'AG 153046960 Downstream 87bp
chrX 153047046 153047046 1 + G C LUAD 153047042 + 153047022 153047062 41 CTGGGCTGGGGCCACTTCTCCACCGTCTGGCTCTGCTGGGA CTGGGCTGGGGCCACTTCTCCACCCTCTGGCTCTGCTGGGA < 41bp 0.712367163620321 0.406319322182091 0.07580063 0.19494304 prediction 0.424734327240643 Functional Loss - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153047042 chrX:153047046 nonsynonymous SNV 0.976 4 25 hm5C_associated_SNPs_87755 0 0 0 0 2 SRPK3 chrX:153047068 5'GT 153047068 Upstream 23bp
chr19 15754727 15754727 1 + C T UCEC 15754725 + 15754705 15754745 41 CCTTGCTTGCAGGTCACCCCCACGGAGCAGGGCATGAGGGT CCTTGCTTGCAGGTCACCCCCATGGAGCAGGGCATGAGGGT < 41bp 0.774660874170512 0.562294058471229 0.19660291 0.14025745 prediction 0.424733631398567 Functional Loss - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15754725 chr19:15754727 nonsynonymous SNV 0.049 1 23 hm5C_associated_SNPs_87756 0 0 0 0 1 CYP4F3 chr19:15754717 3'AG 15754717 Downstream 11bp
chr13 28830518 28830518 1 + C T SKCM 28830516 + 28830496 28830536 41 TCCCAGAAGAAGAAGTCACACTCCAAATCCAGCAAGTTACA TCCCAGAAGAAGAAGTCACACTTCAAATCCAGCAAGTTACA < 41bp 0.712366245033743 0.395859832590392 0.9500809 0.057167143 prediction 0.424732490067487 Functional Loss - PAN3 ENSG00000152520 CDS Human protein_coding chr13:28830516 chr13:28830518 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_87757 0 0 1 0 1 PAN3 chr13:28830429 3'AG 28830429 Downstream 90bp
chr13 28830519 28830519 1 + C T SKCM 28830516 + 28830496 28830536 41 TCCCAGAAGAAGAAGTCACACTCCAAATCCAGCAAGTTACA TCCCAGAAGAAGAAGTCACACTCTAAATCCAGCAAGTTACA < 41bp 0.712366245033743 0.477188787616796 0.9500809 0.36360434 prediction 0.424732490067487 Functional Loss - PAN3 ENSG00000152520 CDS Human protein_coding chr13:28830516 chr13:28830519 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_87758 0 0 1 0 1 PAN3 chr13:28830429 3'AG 28830429 Downstream 91bp
chr16 2136285 2136285 1 + A T SARC 2136281 + 2136261 2136301 41 GCCTGGGCCGGCTCATCGAGCTGAAGGACTGCCAGCCGGAC GCCTGGGCCGGCTCATCGAGCTGATGGACTGCCAGCCGGAC < 41bp 0.712364749264148 0.387562614484183 0.2586078 0.32835993 prediction 0.424729498528295 Functional Loss - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2136281 chr16:2136285 nonsynonymous SNV 0.983 5 25 hm5C_associated_SNPs_87759 0 0 1 0 2 TSC2 chr16:2136194 3'AG 2136194 Downstream 92bp
chr16 2136285 2136285 1 + A T SARC 2136281 + 2136261 2136301 41 GCCTGGGCCGGCTCATCGAGCTGAAGGACTGCCAGCCGGAC GCCTGGGCCGGCTCATCGAGCTGATGGACTGCCAGCCGGAC < 41bp 0.712364749264148 0.387562614484183 0.2586078 0.32835993 prediction 0.424729498528295 Functional Loss - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2136281 chr16:2136285 nonsynonymous SNV 0.983 5 25 hm5C_associated_SNPs_87759 0 0 1 0 2 TSC2 chr16:2136380 5'GT 2136380 Upstream 96bp
chr8 76456152 76456152 1 + C T SKCM 76456149 + 76456129 76456169 41 GGAAAACACTATGGGGCATCCAGCTGTGATGGGTGCAAGGG GGAAAACACTATGGGGCATCCAGTTGTGATGGGTGCAAGGG < 41bp 0.72521565903295 0.512851806775212 0.3642553 0.31991172 prediction 0.424727704515475 Functional Loss - HNF4G ENSG00000164749 CDS Human protein_coding chr8:76456149 chr8:76456152 synonymous SNV . 0 24 hm5C_associated_SNPs_87760 0 0 0 0 1 HNF4G chr8:76456214 5'GT 76456214 Upstream 63bp
chr1 90475835 90475835 1 + C T MESO 90475832 + 90475812 90475852 41 CCTATGGAGAAGATAAGCCTCAGCAAATCACCCAGTAAGTA CCTATGGAGAAGATAAGCCTCAGTAAATCACCCAGTAAGTA < 41bp 0.720401498677625 0.508043192091233 0.17616633 0.22888324 prediction 0.424716613172783 Functional Loss - ZNF326 ENSG00000162664 CDS Human protein_coding chr1:90475832 chr1:90475835 synonymous SNV . 0 24 hm5C_associated_SNPs_87764 0 0 1 0 1 ZNF326 chr1:90475845 5'GT 90475845 Upstream 11bp
chr7 130023570 130023570 1 + G A UCEC 130023567 + 130023547 130023587 41 ATGCAGCTTTCACCGCCATTCTCGACACCTTGGACATCTTC ATGCAGCTTTCACCGCCATTCTCAACACCTTGGACATCTTC < 41bp 0.803539817534614 0.59118575144657 0.6478673 0.082995415 prediction 0.424708132176088 Functional Loss - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130023567 chr7:130023570 nonsynonymous SNV 0.034 0 24 hm5C_associated_SNPs_87768 0 0 0 0 2 CPA1 chr7:130023525 3'AG 130023525 Downstream 46bp
chr7 130023570 130023570 1 + G A UCEC 130023567 + 130023547 130023587 41 ATGCAGCTTTCACCGCCATTCTCGACACCTTGGACATCTTC ATGCAGCTTTCACCGCCATTCTCAACACCTTGGACATCTTC < 41bp 0.803539817534614 0.59118575144657 0.6478673 0.082995415 prediction 0.424708132176088 Functional Loss - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130023567 chr7:130023570 nonsynonymous SNV 0.034 0 24 hm5C_associated_SNPs_87768 0 0 0 0 2 CPA1 chr7:130023635 5'GT 130023635 Upstream 66bp
chrX 128927714 128927714 1 + G A UCEC 128927711 + 128927691 128927731 41 GGTGGACATCCCGCGCGACTCAGGCTGCTTTGAGGGCTCGG GGTGGACATCCCGCGCGACTCAGACTGCTTTGAGGGCTCGG < 41bp 0.810935862888086 0.598584267974873 0.8472091 0.48262256 prediction 0.424703189826426 Functional Loss - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128927711 chrX:128927714 nonsynonymous SNV 0.961 5 24 hm5C_associated_SNPs_87772 0 0 0 0 1 SASH3 chrX:128927618 3'AG 128927618 Downstream 97bp
chr16 18603939 18603939 1 + G A rs142162064 18603936 + 18603916 18603956 41 CTCGCCGTGCTGATGTTCCTCTCGGCCTGCCTGCAAACGCT CTCGCCGTGCTGATGTTCCTCTCAGCCTGCCTGCAAACGCT < 41bp 0.778481373026107 0.566130506768526 0.17442173 0.12434718 prediction 0.424701732515163 Functional Loss - ABCC6P1 ENSG00000256340 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:18603936 chr16:18603939 . . 0 24 hm5C_associated_SNPs_87774 0 0 0 0 2 ABCC6P1 chr16:18603861 3'AG 18603861 Downstream 79bp
chr16 18603939 18603939 1 + G A rs142162064 18603936 + 18603916 18603956 41 CTCGCCGTGCTGATGTTCCTCTCGGCCTGCCTGCAAACGCT CTCGCCGTGCTGATGTTCCTCTCAGCCTGCCTGCAAACGCT < 41bp 0.778481373026107 0.566130506768526 0.17442173 0.12434718 prediction 0.424701732515163 Functional Loss - ABCC6P1 ENSG00000256340 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:18603936 chr16:18603939 . . 0 24 hm5C_associated_SNPs_87774 0 0 0 0 2 ABCC6P1 chr16:18604038 5'GT 18604038 Upstream 100bp
chr8 121381683 121381683 1 + G A SKCM 121381680 + 121381660 121381700 41 CCAAGGTCCTTCTGGCCAGCCTGGATATTGTGACCCCTCAT CCAAGGTCCTTCTGGCCAGCCTGAATATTGTGACCCCTCAT < 41bp 0.786428246594536 0.574079678060268 0.14163923 0.06601882 prediction 0.424697137068536 Functional Loss - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121381680 chr8:121381683 nonsynonymous SNV 0.347 3 24 hm5C_associated_SNPs_87776 0 0 1 0 1 COL14A1 chr8:121381724 5'GT 121381724 Upstream 42bp
chr3 119526101 119526101 1 + G A COAD 119526098 + 119526078 119526118 41 CAAGAGGCCCAGAAGCAAACCTGGAGGTGAGACCCAAAGAA CAAGAGGCCCAGAAGCAAACCTGAAGGTGAGACCCAAAGAA < 41bp 0.795946010348003 0.583600381883882 0.27051222 0.2688443 prediction 0.424691256928241 Functional Loss - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119526098 chr3:119526101 nonsynonymous SNV 0.964 4 24 hm5C_associated_SNPs_87777 0 0 0 0 1 NR1I2 chr3:119526076 3'AG 119526076 Downstream 26bp
chrX 30265555 30265555 1 + G C rs2074794 30265554 + 30265534 30265574 41 GGGGTGCAGCGTCTGGTCAGCGGAGGGTGAATTCTCAGGAC GGGGTGCAGCGTCTGGTCAGCCGAGGGTGAATTCTCAGGAC < 41bp 0.833759072971845 0.621413704997488 0.92337406 0.9124414 prediction 0.424690735948713 Functional Loss - MAGEB1 ENSG00000214107 UTR5 Human protein_coding chrX:30265554 chrX:30265555 . . 0 22 hm5C_associated_SNPs_87778 0 0 1 0 2 MAGEB1 chrX:30265507 3'AG 30265507 Downstream 49bp
chrX 30265555 30265555 1 + G C rs2074794 30265554 + 30265534 30265574 41 GGGGTGCAGCGTCTGGTCAGCGGAGGGTGAATTCTCAGGAC GGGGTGCAGCGTCTGGTCAGCCGAGGGTGAATTCTCAGGAC < 41bp 0.833759072971845 0.621413704997488 0.92337406 0.9124414 prediction 0.424690735948713 Functional Loss - MAGEB1 ENSG00000214107 UTR5 Human protein_coding chrX:30265554 chrX:30265555 . . 0 22 hm5C_associated_SNPs_87778 0 0 1 0 2 MAGEB1 chrX:30265589 5'GT 30265589 Upstream 35bp
chr12 102542068 102542068 1 + C T HNSC 102542065 + 102542045 102542085 41 TATTGACATGGAAATACTTGCTCCATGAGAAATTGAACTTA TATTGACATGGAAATACTTGCTCTATGAGAAATTGAACTTA < 41bp 0.762402235280123 0.550057786879193 0.9284493 0.9213666 prediction 0.42468889680186 Functional Loss - PARPBP ENSG00000185480 CDS Human protein_coding chr12:102542065 chr12:102542068 nonsynonymous SNV 0.961 1 24 hm5C_associated_SNPs_87779 0 0 1 0 2 PARPBP chr12:102542008 3'AG 102542008 Downstream 61bp
chr12 102542068 102542068 1 + C T HNSC 102542065 + 102542045 102542085 41 TATTGACATGGAAATACTTGCTCCATGAGAAATTGAACTTA TATTGACATGGAAATACTTGCTCTATGAGAAATTGAACTTA < 41bp 0.762402235280123 0.550057786879193 0.9284493 0.9213666 prediction 0.42468889680186 Functional Loss - PARPBP ENSG00000185480 CDS Human protein_coding chr12:102542065 chr12:102542068 nonsynonymous SNV 0.961 1 24 hm5C_associated_SNPs_87779 0 0 1 0 2 PARPBP chr12:102542013 3'AG 102542013 Downstream 56bp
chr12 6946159 6946159 1 + G A COAD 6946156 + 6946136 6946176 41 CCTTCCTATTTAGGATGCAGCTGGGGCTGGAGCCAGGTCTG CCTTCCTATTTAGGATGCAGCTGAGGCTGGAGCCAGGTCTG < 41bp 0.821660578952801 0.609317738099532 0.4823187 0.33953816 prediction 0.424685681706537 Functional Loss - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6946156 chr12:6946159 nonsynonymous SNV 0.973 0 24 hm5C_associated_SNPs_87780 0 0 1 0 2 P3H3 chr12:6946149 3'AG 6946149 Downstream 11bp
chr12 6946159 6946159 1 + G A COAD 6946156 + 6946136 6946176 41 CCTTCCTATTTAGGATGCAGCTGGGGCTGGAGCCAGGTCTG CCTTCCTATTTAGGATGCAGCTGAGGCTGGAGCCAGGTCTG < 41bp 0.821660578952801 0.609317738099532 0.4823187 0.33953816 prediction 0.424685681706537 Functional Loss - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6946156 chr12:6946159 nonsynonymous SNV 0.973 0 24 hm5C_associated_SNPs_87780 0 0 1 0 2 P3H3 chr12:6946250 5'GT 6946250 Upstream 92bp
chr11 65046257 65046257 1 + C T SKCM 65046255 + 65046235 65046275 41 AACCGAGGAGAAGTGGTTACCTCCTTCGGCTTAGCACAGGG AACCGAGGAGAAGTGGTTACCTTCTTCGGCTTAGCACAGGG < 41bp 0.712338032691604 0.413155412486592 0.15106043 0.023979902 prediction 0.424676065383208 Functional Loss - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65046255 chr11:65046257 nonsynonymous SNV 0.968 1 23 hm5C_associated_SNPs_87784 0 0 1 0 1 POLA2 chr11:65046201 3'AG 65046201 Downstream 57bp
chr3 50155853 50155853 1 + G A SKCM 50155850 + 50155830 50155870 41 GATTCCTACAAAGATGCTGTCCGGAAAGCCATGTTTGCCCG GATTCCTACAAAGATGCTGTCCGAAAAGCCATGTTTGCCCG < 41bp 0.766770814048023 0.554436324406458 0.23194379 0.0507136 prediction 0.424668979283131 Functional Loss - RBM5 ENSG00000003756 CDS Human protein_coding chr3:50155850 chr3:50155853 synonymous SNV . 0 24 hm5C_associated_SNPs_87787 0 0 1 0 1 RBM5 chr3:50155764 3'AG 50155764 Downstream 90bp
chr13 20235920 20235920 1 + C T UCEC 20235918 + 20235898 20235938 41 CGACTCCTCATCACAAAAGGCGCGAAAGTGAACGGTCGGCA CGACTCCTCATCACAAAAGGCGTGAAAGTGAACGGTCGGCA < 41bp 0.866192488738491 0.65386360462394 0.24882683 0.20002139 prediction 0.424657768229103 Functional Loss - MPHOSPH8 ENSG00000196199 CDS Human protein_coding chr13:20235918 chr13:20235920 nonsynonymous SNV 0.649 2 23 hm5C_associated_SNPs_87795 0 0 1 0 2 MPHOSPH8 chr13:20235838 3'AG 20235838 Downstream 83bp
chr13 20235920 20235920 1 + C T UCEC 20235918 + 20235898 20235938 41 CGACTCCTCATCACAAAAGGCGCGAAAGTGAACGGTCGGCA CGACTCCTCATCACAAAAGGCGTGAAAGTGAACGGTCGGCA < 41bp 0.866192488738491 0.65386360462394 0.24882683 0.20002139 prediction 0.424657768229103 Functional Loss - MPHOSPH8 ENSG00000196199 CDS Human protein_coding chr13:20235918 chr13:20235920 nonsynonymous SNV 0.649 2 23 hm5C_associated_SNPs_87795 0 0 1 0 2 MPHOSPH8 chr13:20235978 5'GT 20235978 Upstream 59bp
chr7 134221867 134221867 1 + C T SKCM 134221865 + 134221845 134221885 41 TACTGCCACTCCAAGGGCATCACCGTTACGGCCTACAGCCC TACTGCCACTCCAAGGGCATCATCGTTACGGCCTACAGCCC < 41bp 0.712327961110952 0.43406386051894 0.015106499 0.010630637 prediction 0.424655922221904 Functional Loss - AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134221865 chr7:134221867 nonsynonymous SNV 0.061 0 23 hm5C_associated_SNPs_87796 0 0 0 0 2 AKR1B10 chr7:134221803 3'AG 134221803 Downstream 65bp
chr7 134221867 134221867 1 + C T SKCM 134221865 + 134221845 134221885 41 TACTGCCACTCCAAGGGCATCACCGTTACGGCCTACAGCCC TACTGCCACTCCAAGGGCATCATCGTTACGGCCTACAGCCC < 41bp 0.712327961110952 0.43406386051894 0.015106499 0.010630637 prediction 0.424655922221904 Functional Loss - AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134221865 chr7:134221867 nonsynonymous SNV 0.061 0 23 hm5C_associated_SNPs_87796 0 0 0 0 2 AKR1B10 chr7:134221909 5'GT 134221909 Upstream 43bp
chr18 29039894 29039894 1 + G A SKCM 29039891 + 29039871 29039911 41 TTGCCTTCAAAATTGTCTCTCAGGAACCAGCAGGCACACCC TTGCCTTCAAAATTGTCTCTCAGAAACCAGCAGGCACACCC < 41bp 0.712327311167891 0.479181733043362 0.8588349 0.36012912 prediction 0.424654622335783 Functional Loss - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29039891 chr18:29039894 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_87797 0 0 0 0 2 DSG3 chr18:29039808 3'AG 29039808 Downstream 87bp
chr18 29039894 29039894 1 + G A SKCM 29039891 + 29039871 29039911 41 TTGCCTTCAAAATTGTCTCTCAGGAACCAGCAGGCACACCC TTGCCTTCAAAATTGTCTCTCAGAAACCAGCAGGCACACCC < 41bp 0.712327311167891 0.479181733043362 0.8588349 0.36012912 prediction 0.424654622335783 Functional Loss - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29039891 chr18:29039894 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_87797 0 0 0 0 2 DSG3 chr18:29039974 5'GT 29039974 Upstream 81bp
chr18 29039893 29039893 1 + G T UCEC 29039891 + 29039871 29039911 41 TTGCCTTCAAAATTGTCTCTCAGGAACCAGCAGGCACACCC TTGCCTTCAAAATTGTCTCTCATGAACCAGCAGGCACACCC < 41bp 0.712327311167891 0.356895861803741 0.8588349 0.15691206 prediction 0.424654622335783 Functional Loss - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29039891 chr18:29039893 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_87798 0 0 0 0 2 DSG3 chr18:29039808 3'AG 29039808 Downstream 86bp
chr18 29039893 29039893 1 + G T UCEC 29039891 + 29039871 29039911 41 TTGCCTTCAAAATTGTCTCTCAGGAACCAGCAGGCACACCC TTGCCTTCAAAATTGTCTCTCATGAACCAGCAGGCACACCC < 41bp 0.712327311167891 0.356895861803741 0.8588349 0.15691206 prediction 0.424654622335783 Functional Loss - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29039891 chr18:29039893 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_87798 0 0 0 0 2 DSG3 chr18:29039974 5'GT 29039974 Upstream 82bp
chr1 156890694 156890694 1 + G A CESC 156890691 + 156890671 156890711 41 GTGACCAAAAAGGGAGAGCGCGCGGCCAAAGAGAAGCCAGC GTGACCAAAAAGGGAGAGCGCGCAGCCAAAGAGAAGCCAGC < 41bp 0.792374772693286 0.580054454459465 0.5505533 0.20174125 prediction 0.424640636467642 Functional Loss - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156890691 chr1:156890694 synonymous SNV . 0 24 hm5C_associated_SNPs_87802 0 0 0 0 1 LRRC71 chr1:156890755 5'GT 156890755 Upstream 62bp
chr6 37427414 37427414 1 + T C UCEC 37427413 + 37427393 37427433 41 CTGCTTTTCGGAATTTTGTCCTGGATAACACAGATCGCAAG CTGCTTTTCGGAATTTTGTCCCGGATAACACAGATCGCAAG < 41bp 0.712309981070577 0.446551006994353 0.41046804 0.51889306 prediction 0.424619962141153 Functional Loss - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37427413 chr6:37427414 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_87809 0 0 1 0 2 CMTR1 chr6:37427342 3'AG 37427342 Downstream 73bp
chr6 37427414 37427414 1 + T C UCEC 37427413 + 37427393 37427433 41 CTGCTTTTCGGAATTTTGTCCTGGATAACACAGATCGCAAG CTGCTTTTCGGAATTTTGTCCCGGATAACACAGATCGCAAG < 41bp 0.712309981070577 0.446551006994353 0.41046804 0.51889306 prediction 0.424619962141153 Functional Loss - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37427413 chr6:37427414 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_87809 0 0 1 0 2 CMTR1 chr6:37427460 5'GT 37427460 Upstream 47bp
chr10 5945116 5945116 1 + G C LIHC 5945115 + 5945095 5945135 41 CCATGGTCTCTATCCTAAACCGAGAACAAAAAGAGGGAGTA CCATGGTCTCTATCCTAAACCCAGAACAAAAAGAGGGAGTA < 41bp 0.712309749836891 0.415311909515721 0.3077736 0.31638223 prediction 0.424619499673782 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5945115 chr10:5945116 synonymous SNV . 0 22 hm5C_associated_SNPs_87810 0 0 1 0 1 FBXO18 chr10:5945138 5'GT 5945138 Upstream 23bp
chr2 228147231 228147231 1 + G A SKCM 228147228 + 228147208 228147248 41 AAGAGGATATCCAGGAAATCCGGGAATTTTAGGGCCACCAG AAGAGGATATCCAGGAAATCCGGAAATTTTAGGGCCACCAG < 41bp 0.786901779163659 0.57459309844626 0.9297718 0.90820885 prediction 0.424617361434797 Functional Loss - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228147228 chr2:228147231 nonsynonymous SNV 0.358 5 24 hm5C_associated_SNPs_87811 0 0 0 0 1 COL4A3 chr2:228147248 5'GT 228147248 Upstream 18bp
chr16 25180478 25180478 1 + C T BLCA 25180475 + 25180455 25180495 41 GGCAGATCATGATTGAAAACCTGCGGAGACGCCAGTGTGAC GGCAGATCATGATTGAAAACCTGTGGAGACGCCAGTGTGAC < 41bp 0.763397876264208 0.551089199272897 0.28713715 0.33585167 prediction 0.424617353982622 Functional Loss - LCMT1 ENSG00000205629 CDS Human protein_coding chr16:25180475 chr16:25180478 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_87812 0 0 1 0 2 LCMT1 chr16:25180433 3'AG 25180433 Downstream 46bp
chr16 25180478 25180478 1 + C T BLCA 25180475 + 25180455 25180495 41 GGCAGATCATGATTGAAAACCTGCGGAGACGCCAGTGTGAC GGCAGATCATGATTGAAAACCTGTGGAGACGCCAGTGTGAC < 41bp 0.763397876264208 0.551089199272897 0.28713715 0.33585167 prediction 0.424617353982622 Functional Loss - LCMT1 ENSG00000205629 CDS Human protein_coding chr16:25180475 chr16:25180478 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_87812 0 0 1 0 2 LCMT1 chr16:25180534 5'GT 25180534 Upstream 57bp
chr2 97007492 97007492 1 + C T BLCA 97007490 + 97007470 97007510 41 CCCTGCCCAGGAAGGCGCCTCTCAATATTCCTGGCACCCCA CCCTGCCCAGGAAGGCGCCTCTTAATATTCCTGGCACCCCA < 41bp 0.712304443293647 0.421003857108454 0.90737283 0.18433711 prediction 0.424608886587295 Functional Loss - NCAPH ENSG00000121152 CDS Human protein_coding chr2:97007490 chr2:97007492 synonymous SNV . 0 23 hm5C_associated_SNPs_87814 0 0 1 0 2 NCAPH chr2:97007413 3'AG 97007413 Downstream 80bp
chr2 97007492 97007492 1 + C T BLCA 97007490 + 97007470 97007510 41 CCCTGCCCAGGAAGGCGCCTCTCAATATTCCTGGCACCCCA CCCTGCCCAGGAAGGCGCCTCTTAATATTCCTGGCACCCCA < 41bp 0.712304443293647 0.421003857108454 0.90737283 0.18433711 prediction 0.424608886587295 Functional Loss - NCAPH ENSG00000121152 CDS Human protein_coding chr2:97007490 chr2:97007492 synonymous SNV . 0 23 hm5C_associated_SNPs_87814 0 0 1 0 2 NCAPH chr2:97007452 3'AG 97007452 Downstream 41bp
chr22 50636350 50636350 1 + C T rs527937578 50636348 + 50636328 50636368 41 GACCTGCACCGCACCATCGTCTCGGAGCGCGACGTCTACCT GACCTGCACCGCACCATCGTCTTGGAGCGCGACGTCTACCT < 41bp 0.712299488254999 0.426970095434986 0.68144774 0.17186162 prediction 0.424598976509998 Functional Loss - TRABD ENSG00000170638 CDS Human protein_coding chr22:50636348 chr22:50636350 nonsynonymous SNV 0.673 1 23 hm5C_associated_SNPs_87817 0 0 1 0 2 TRABD chr22:50636252 3'AG 50636252 Downstream 99bp
chr22 50636350 50636350 1 + C T rs527937578 50636348 + 50636328 50636368 41 GACCTGCACCGCACCATCGTCTCGGAGCGCGACGTCTACCT GACCTGCACCGCACCATCGTCTTGGAGCGCGACGTCTACCT < 41bp 0.712299488254999 0.426970095434986 0.68144774 0.17186162 prediction 0.424598976509998 Functional Loss - TRABD ENSG00000170638 CDS Human protein_coding chr22:50636348 chr22:50636350 nonsynonymous SNV 0.673 1 23 hm5C_associated_SNPs_87817 0 0 1 0 2 TRABD chr22:50636424 5'GT 50636424 Upstream 75bp
chr15 65226416 65226416 1 + C T COAD 65226413 + 65226393 65226433 41 GTCCTCATCCACGCAGGAGGCTGCGCCAACGTGGTTGATCA GTCCTCATCCACGCAGGAGGCTGTGCCAACGTGGTTGATCA < 41bp 0.734702192696873 0.522404844600843 0.15809062 0.10293138 prediction 0.42459469619206 Functional Loss - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65226413 chr15:65226416 synonymous SNV . 0 24 hm5C_associated_SNPs_87818 0 0 0 0 2 ANKDD1A chr15:65226336 3'AG 65226336 Downstream 81bp
chr15 65226416 65226416 1 + C T COAD 65226413 + 65226393 65226433 41 GTCCTCATCCACGCAGGAGGCTGCGCCAACGTGGTTGATCA GTCCTCATCCACGCAGGAGGCTGTGCCAACGTGGTTGATCA < 41bp 0.734702192696873 0.522404844600843 0.15809062 0.10293138 prediction 0.42459469619206 Functional Loss - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65226413 chr15:65226416 synonymous SNV . 0 24 hm5C_associated_SNPs_87818 0 0 0 0 2 ANKDD1A chr15:65226434 5'GT 65226434 Upstream 19bp
chr4 5170100 5170100 1 + G A HNSC 5170097 + 5170077 5170117 41 ATGAACAAGCAGAAGTGCATCGAGAGGGATGAGGTTCGGAA ATGAACAAGCAGAAGTGCATCGAAAGGGATGAGGTTCGGAA < 41bp 0.759654184635901 0.547357897097724 0.69816244 0.29397416 prediction 0.424592575076354 Functional Loss - STK32B ENSG00000152953 CDS Human protein_coding chr4:5170097 chr4:5170100 synonymous SNV . 0 24 hm5C_associated_SNPs_87819 0 0 0 0 2 STK32B chr4:5170026 3'AG 5170026 Downstream 75bp
chr4 5170100 5170100 1 + G A HNSC 5170097 + 5170077 5170117 41 ATGAACAAGCAGAAGTGCATCGAGAGGGATGAGGTTCGGAA ATGAACAAGCAGAAGTGCATCGAAAGGGATGAGGTTCGGAA < 41bp 0.759654184635901 0.547357897097724 0.69816244 0.29397416 prediction 0.424592575076354 Functional Loss - STK32B ENSG00000152953 CDS Human protein_coding chr4:5170097 chr4:5170100 synonymous SNV . 0 24 hm5C_associated_SNPs_87819 0 0 0 0 2 STK32B chr4:5170177 5'GT 5170177 Upstream 78bp
chr2 25224413 25224413 1 + A C rs567011791 25224412 + 25224392 25224432 41 TGTGGGGTGGACCATGGAAACAGGTTTGAAGAGAGAAGCTC TGTGGGGTGGACCATGGAAACCGGTTTGAAGAGAGAAGCTC < 41bp 0.840919693853179 0.628625689336847 0.35504812 0.10251203 prediction 0.424588009032663 Functional Loss - DNAJC27-AS1 ENSG00000224165 ncRNA_exonic Human antisense chr2:25224412 chr2:25224413 . . 0 22 hm5C_associated_SNPs_87820 0 0 0 1 1 DNAJC27-AS1 chr2:25224414 5'GT 25224414 Upstream 2bp
chr5 162945257 162945257 1 + C T SKCM 162945255 + 162945235 162945275 41 AGAAATGCTCAGCTTGACTGCTCCAAATTGGAGACCTTGGG AGAAATGCTCAGCTTGACTGCTTCAAATTGGAGACCTTGGG < 41bp 0.837987231385569 0.625693401060187 0.35751325 0.062476426 prediction 0.424587660650765 Functional Loss - MAT2B ENSG00000038274 CDS Human protein_coding chr5:162945255 chr5:162945257 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_87821 0 0 1 1 1 MAT2B chr5:162945199 3'AG 162945199 Downstream 59bp
chr1 44447534 44447534 1 + C T SKCM 44447531 + 44447511 44447551 41 AACACCACCTGCGCTACTGGCTCCACTATCTACACCCCATC AACACCACCTGCGCTACTGGCTCTACTATCTACACCCCATC < 41bp 0.736056337216022 0.52376385996085 0.56020504 0.4170991 prediction 0.424584954510344 Functional Loss - B4GALT2 ENSG00000117411 CDS Human protein_coding chr1:44447531 chr1:44447534 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_87822 0 0 1 0 1 B4GALT2 chr1:44447596 5'GT 44447596 Upstream 63bp
chr6 76369015 76369015 1 + A T KIRC 76369011 + 76368991 76369031 41 GAAAACAGAAGAGTCCGAATCACAAGTGGAGCCTGAAATTA GAAAACAGAAGAGTCCGAATCACATGTGGAGCCTGAAATTA < 41bp 0.712286498545732 0.36969167486909 0.030726403 0.057765633 prediction 0.424572997091464 Functional Loss - SENP6 ENSG00000112701 CDS Human protein_coding chr6:76369011 chr6:76369015 nonsynonymous SNV 0.016 0 25 hm5C_associated_SNPs_87825 0 0 1 0 1 SENP6 chr6:76368978 3'AG 76368978 Downstream 38bp
chrX 10085660 10085660 1 + G A UCEC 10085657 + 10085637 10085677 41 GCATGGCGGCCCTTCAGCCACACGGGGTCCCCGGGGATGGG GCATGGCGGCCCTTCAGCCACACAGGGTCCCCGGGGATGGG < 41bp 0.82119146005055 0.608905530691037 0.5188486 0.11348915 prediction 0.424571858719027 Functional Loss - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10085657 chrX:10085660 nonsynonymous SNV 0.077 0 24 hm5C_associated_SNPs_87826 0 0 0 0 1 WWC3 chrX:10085729 5'GT 10085729 Upstream 70bp
chr4 169049306 169049306 1 + C T SKCM 169049304 + 169049284 169049324 41 CCCAAATGCTAGGAGGAGCACTCCAAGGATTTGGTAAGTCT CCCAAATGCTAGGAGGAGCACTTCAAGGATTTGGTAAGTCT < 41bp 0.712281032732796 0.413231808445655 0.9516564 0.41523293 prediction 0.424562065465593 Functional Loss - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169049304 chr4:169049306 synonymous SNV . 0 23 hm5C_associated_SNPs_87829 0 0 0 0 2 ANXA10 chr4:169049235 3'AG 169049235 Downstream 72bp
chr4 169049306 169049306 1 + C T SKCM 169049304 + 169049284 169049324 41 CCCAAATGCTAGGAGGAGCACTCCAAGGATTTGGTAAGTCT CCCAAATGCTAGGAGGAGCACTTCAAGGATTTGGTAAGTCT < 41bp 0.712281032732796 0.413231808445655 0.9516564 0.41523293 prediction 0.424562065465593 Functional Loss - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169049304 chr4:169049306 synonymous SNV . 0 23 hm5C_associated_SNPs_87829 0 0 0 0 2 ANXA10 chr4:169049316 5'GT 169049316 Upstream 11bp
chr4 169049305 169049305 1 + T C UCEC 169049304 + 169049284 169049324 41 CCCAAATGCTAGGAGGAGCACTCCAAGGATTTGGTAAGTCT CCCAAATGCTAGGAGGAGCACCCCAAGGATTTGGTAAGTCT < 41bp 0.712281032732796 0.443020147534527 0.9516564 0.14310354 prediction 0.424562065465593 Functional Loss - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169049304 chr4:169049305 nonsynonymous SNV 0.880 4 22 hm5C_associated_SNPs_87830 0 0 0 0 2 ANXA10 chr4:169049235 3'AG 169049235 Downstream 71bp
chr4 169049305 169049305 1 + T C UCEC 169049304 + 169049284 169049324 41 CCCAAATGCTAGGAGGAGCACTCCAAGGATTTGGTAAGTCT CCCAAATGCTAGGAGGAGCACCCCAAGGATTTGGTAAGTCT < 41bp 0.712281032732796 0.443020147534527 0.9516564 0.14310354 prediction 0.424562065465593 Functional Loss - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169049304 chr4:169049305 nonsynonymous SNV 0.880 4 22 hm5C_associated_SNPs_87830 0 0 0 0 2 ANXA10 chr4:169049316 5'GT 169049316 Upstream 12bp
chr20 9319595 9319595 1 + G T OV 9319592 + 9319572 9319612 41 TTGGAAAATCAGAAAATGATCTGGAAGGGCGGATAGTTTGT TTGGAAAATCAGAAAATGATCTGTAAGGGCGGATAGTTTGT < 41bp 0.712280850982635 0.347843749565536 0.6924119 0.38393697 prediction 0.42456170196527 Functional Loss - PLCB4 ENSG00000101333 CDS Human protein_coding chr20:9319592 chr20:9319595 stopgain 0.999 1 24 hm5C_associated_SNPs_87832 0 0 0 0 2 PLCB4 chr20:9319541 3'AG 9319541 Downstream 55bp
chr20 9319595 9319595 1 + G T OV 9319592 + 9319572 9319612 41 TTGGAAAATCAGAAAATGATCTGGAAGGGCGGATAGTTTGT TTGGAAAATCAGAAAATGATCTGTAAGGGCGGATAGTTTGT < 41bp 0.712280850982635 0.347843749565536 0.6924119 0.38393697 prediction 0.42456170196527 Functional Loss - PLCB4 ENSG00000101333 CDS Human protein_coding chr20:9319592 chr20:9319595 stopgain 0.999 1 24 hm5C_associated_SNPs_87832 0 0 0 0 2 PLCB4 chr20:9319684 5'GT 9319684 Upstream 90bp
chr5 94756050 94756050 1 + C T STAD 94756048 + 94756028 94756068 41 CAGGAACTAACTTTGCAGTACACGAGATAAACATCAAACAC CAGGAACTAACTTTGCAGTACATGAGATAAACATCAAACAC < 41bp 0.712280197441011 0.492199664943038 0.09416658 0.12764835 prediction 0.424560394882022 Functional Loss - FAM81B ENSG00000153347 CDS Human protein_coding chr5:94756048 chr5:94756050 synonymous SNV . 0 23 hm5C_associated_SNPs_87834 0 0 0 0 2 FAM81B chr5:94755988 3'AG 94755988 Downstream 63bp
chr5 94756050 94756050 1 + C T STAD 94756048 + 94756028 94756068 41 CAGGAACTAACTTTGCAGTACACGAGATAAACATCAAACAC CAGGAACTAACTTTGCAGTACATGAGATAAACATCAAACAC < 41bp 0.712280197441011 0.492199664943038 0.09416658 0.12764835 prediction 0.424560394882022 Functional Loss - FAM81B ENSG00000153347 CDS Human protein_coding chr5:94756048 chr5:94756050 synonymous SNV . 0 23 hm5C_associated_SNPs_87834 0 0 0 0 2 FAM81B chr5:94756106 5'GT 94756106 Upstream 57bp
chrX 140983303 140983303 1 + C T UCEC 140983300 + 140983280 140983320 41 GCCACAGACAGGAAGATGGCCGCCGAGGGCTGACCGAGGCG GCCACAGACAGGAAGATGGCCGCTGAGGGCTGACCGAGGCG < 41bp 0.722286251107352 0.510006284870983 0.2228468 0.132023 prediction 0.424559932472739 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140983300 chrX:140983303 stopgain 0.000 0 24 hm5C_associated_SNPs_87835 0 0 0 0 2 MAGEC3 chrX:140983271 3'AG 140983271 Downstream 33bp
chrX 140983303 140983303 1 + C T UCEC 140983300 + 140983280 140983320 41 GCCACAGACAGGAAGATGGCCGCCGAGGGCTGACCGAGGCG GCCACAGACAGGAAGATGGCCGCTGAGGGCTGACCGAGGCG < 41bp 0.722286251107352 0.510006284870983 0.2228468 0.132023 prediction 0.424559932472739 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140983300 chrX:140983303 stopgain 0.000 0 24 hm5C_associated_SNPs_87835 0 0 0 0 2 MAGEC3 chrX:140983345 5'GT 140983345 Upstream 43bp
chr19 55098736 55098736 1 + G C rs73939007 55098732 + 55098712 55098752 41 ATCCGCATGGGTGTGGCTGGCTTGGTCCTGGTGGTCCTCGG ATCCGCATGGGTGTGGCTGGCTTGCTCCTGGTGGTCCTCGG < 41bp 0.712278602279532 0.409099940835596 0.57559305 0.16259167 prediction 0.424557204559064 Functional Loss - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55098732 chr19:55098736 nonsynonymous SNV 0.088 0 25 hm5C_associated_SNPs_87839 0 0 0 0 1 LILRA2 chr19:55098668 3'AG 55098668 Downstream 69bp
chr22 29139951 29139951 1 + C T SKCM 29139948 + 29139928 29139968 41 CGTCTTGTCCACCCAGATTTCTTCAGCCAGAGGTCTCAGGT CGTCTTGTCCACCCAGATTTCTTTAGCCAGAGGTCTCAGGT < 41bp 0.743714829164007 0.531445147782571 0.15204749 0.089488685 prediction 0.424539362762872 Functional Loss - HSCB ENSG00000100209 CDS Human protein_coding chr22:29139948 chr22:29139951 synonymous SNV . 0 24 hm5C_associated_SNPs_87844 0 0 1 0 2 HSCB chr22:29139870 3'AG 29139870 Downstream 82bp
chr22 29139951 29139951 1 + C T SKCM 29139948 + 29139928 29139968 41 CGTCTTGTCCACCCAGATTTCTTCAGCCAGAGGTCTCAGGT CGTCTTGTCCACCCAGATTTCTTTAGCCAGAGGTCTCAGGT < 41bp 0.743714829164007 0.531445147782571 0.15204749 0.089488685 prediction 0.424539362762872 Functional Loss - HSCB ENSG00000100209 CDS Human protein_coding chr22:29139948 chr22:29139951 synonymous SNV . 0 24 hm5C_associated_SNPs_87844 0 0 1 0 2 HSCB chr22:29139966 5'GT 29139966 Upstream 16bp
chr6 167595243 167595243 1 + G A LUSC 167595240 + 167595220 167595260 41 CTGTAAACCCACCATCTTCCCTGGAAATAGCACAGGCCATG CTGTAAACCCACCATCTTCCCTGAAAATAGCACAGGCCATG < 41bp 0.78042184478188 0.56816634957982 0.10505006 0.018397152 prediction 0.424510990404119 Functional Loss - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167595240 chr6:167595243 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_87855 0 0 0 0 1 TCP10L2 chr6:167595213 3'AG 167595213 Downstream 31bp
chr22 50320925 50320925 1 + G A LGG 50320922 + 50320902 50320942 41 GAAGCCACAGAAGGAGAAAGCCCGACACAGCTGCCCTCCCG GAAGCCACAGAAGGAGAAAGCCCAACACAGCTGCCCTCCCG < 41bp 0.795282206239958 0.583028252253456 0.22854954 0.12817779 prediction 0.424507907973003 Functional Loss - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50320922 chr22:50320925 synonymous SNV . 0 24 hm5C_associated_SNPs_87856 0 0 1 0 1 CRELD2 chr22:50320903 3'AG 50320903 Downstream 23bp
chr11 57563201 57563201 1 + G A COAD 57563198 + 57563178 57563218 41 ACCACTCGGCGCACAGAGACCACGGTAAACTAAGACGTGTG ACCACTCGGCGCACAGAGACCACAGTAAACTAAGACGTGTG < 41bp 0.751111911008393 0.538858581055013 0.25494388 0.11957434 prediction 0.42450665990676 Functional Loss - CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57563198 chr11:57563201 synonymous SNV . 0 24 hm5C_associated_SNPs_87857 0 0 0 0 1 CTNND1 chr11:57563201 5'GT 57563201 Upstream 1bp
chrX 122319754 122319754 1 + C T STAD 122319751 + 122319731 122319771 41 TTTGCCGTGCAGTTATACAACACCAACCAGAACACCACCGA TTTGCCGTGCAGTTATACAACACTAACCAGAACACCACCGA < 41bp 0.739896970530301 0.527645676747771 0.0138396025 0.017739385 prediction 0.424502587565059 Functional Loss - GRIA3 ENSG00000125675 CDS Human protein_coding chrX:122319751 chrX:122319754 synonymous SNV . 0 24 hm5C_associated_SNPs_87858 0 0 0 0 2 GRIA3 chrX:122319684 3'AG 122319684 Downstream 71bp
chrX 122319754 122319754 1 + C T STAD 122319751 + 122319731 122319771 41 TTTGCCGTGCAGTTATACAACACCAACCAGAACACCACCGA TTTGCCGTGCAGTTATACAACACTAACCAGAACACCACCGA < 41bp 0.739896970530301 0.527645676747771 0.0138396025 0.017739385 prediction 0.424502587565059 Functional Loss - GRIA3 ENSG00000125675 CDS Human protein_coding chrX:122319751 chrX:122319754 synonymous SNV . 0 24 hm5C_associated_SNPs_87858 0 0 0 0 2 GRIA3 chrX:122319842 5'GT 122319842 Upstream 89bp
chr22 23501371 23501371 1 + G A COAD 23501368 + 23501348 23501388 41 AGTCAGGGGCCGCATGTGAGCAGGCCGAAGCAGACGCTGTG AGTCAGGGGCCGCATGTGAGCAGACCGAAGCAGACGCTGTG < 41bp 0.808556974400574 0.5963122527584 0.8419609 0.65002537 prediction 0.424489443284347 Functional Loss - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23501368 chr22:23501371 nonsynonymous SNV 0.040 1 24 hm5C_associated_SNPs_87864 0 0 0 0 2 RAB36 chr22:23501350 3'AG 23501350 Downstream 22bp
chr22 23501371 23501371 1 + G A COAD 23501368 + 23501348 23501388 41 AGTCAGGGGCCGCATGTGAGCAGGCCGAAGCAGACGCTGTG AGTCAGGGGCCGCATGTGAGCAGACCGAAGCAGACGCTGTG < 41bp 0.808556974400574 0.5963122527584 0.8419609 0.65002537 prediction 0.424489443284347 Functional Loss - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23501368 chr22:23501371 nonsynonymous SNV 0.040 1 24 hm5C_associated_SNPs_87864 0 0 0 0 2 RAB36 chr22:23501440 5'GT 23501440 Upstream 70bp
chr6 109283308 109283308 1 + C T rs116563207 109283305 + 109283285 109283325 41 CTCTCCCAGGACCATGATGTCTGCGATTTCATTGTGCAGAA CTCTCCCAGGACCATGATGTCTGTGATTTCATTGTGCAGAA < 41bp 0.751411478676351 0.539168142145058 0.31141412 0.34792912 prediction 0.424486673062585 Functional Loss - ARMC2 ENSG00000118690 CDS Human protein_coding chr6:109283305 chr6:109283308 synonymous SNV . 0 24 hm5C_associated_SNPs_87866 0 0 0 0 2 ARMC2 chr6:109283217 3'AG 109283217 Downstream 92bp
chr6 109283308 109283308 1 + C T rs116563207 109283305 + 109283285 109283325 41 CTCTCCCAGGACCATGATGTCTGCGATTTCATTGTGCAGAA CTCTCCCAGGACCATGATGTCTGTGATTTCATTGTGCAGAA < 41bp 0.751411478676351 0.539168142145058 0.31141412 0.34792912 prediction 0.424486673062585 Functional Loss - ARMC2 ENSG00000118690 CDS Human protein_coding chr6:109283305 chr6:109283308 synonymous SNV . 0 24 hm5C_associated_SNPs_87866 0 0 0 0 2 ARMC2 chr6:109283330 5'GT 109283330 Upstream 23bp
chr5 174156184 174156184 1 + C T STAD 174156181 + 174156161 174156201 41 GGACATATGAGCCCTACCACCTGCACCCTGAGGAAACACAA GGACATATGAGCCCTACCACCTGTACCCTGAGGAAACACAA < 41bp 0.741766591684935 0.529524436407711 0.122641355 0.11336365 prediction 0.424484310554448 Functional Loss - MSX2 ENSG00000120149 CDS Human protein_coding chr5:174156181 chr5:174156184 synonymous SNV . 0 24 hm5C_associated_SNPs_87867 0 0 0 0 1 MSX2 chr5:174156162 3'AG 174156162 Downstream 23bp
chr19 48339553 48339553 1 + G T LUAD 48339550 + 48339530 48339570 41 CCACCTTCACCCGGAGCCAACTGGAGGAGCTGGAGGCACTG CCACCTTCACCCGGAGCCAACTGTAGGAGCTGGAGGCACTG < 41bp 0.936679627400258 0.724438086149136 0.89229906 0.31200558 prediction 0.424483082502245 Functional Loss - CRX ENSG00000105392 CDS Human protein_coding chr19:48339550 chr19:48339553 stopgain 1.000 1 24 hm5C_associated_SNPs_87870 0 0 0 0 1 CRX chr19:48339500 3'AG 48339500 Downstream 54bp
chr15 89195437 89195437 1 + G C OV 89195436 + 89195416 89195456 41 ATGAGCGGCTACACAATCTACGACACGTCCACTGACAGGCT ATGAGCGGCTACACAATCTACCACACGTCCACTGACAGGCT < 41bp 0.712240026179726 0.400554296981533 0.009140998 0.02621463 prediction 0.424480052359451 Functional Loss - ISG20 ENSG00000172183 CDS Human protein_coding chr15:89195436 chr15:89195437 nonsynonymous SNV 0.951 4 22 hm5C_associated_SNPs_87871 0 0 1 0 1 ISG20 chr15:89195341 3'AG 89195341 Downstream 97bp
chr20 43940944 43940944 1 + C T KIRP 43940942 + 43940922 43940962 41 TGGTGCTGCGGCTGGTGCTGCGCGGGGGCCGGGAGCTGGGT TGGTGCTGCGGCTGGTGCTGCGTGGGGGCCGGGAGCTGGGT < 41bp 0.848638252473704 0.6363992913295 0.85628885 0.69949836 prediction 0.424477922288408 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43940942 chr20:43940944 synonymous SNV . 0 23 hm5C_associated_SNPs_87872 0 0 0 0 2 RBPJL chr20:43940861 3'AG 43940861 Downstream 84bp
chr20 43940944 43940944 1 + C T KIRP 43940942 + 43940922 43940962 41 TGGTGCTGCGGCTGGTGCTGCGCGGGGGCCGGGAGCTGGGT TGGTGCTGCGGCTGGTGCTGCGTGGGGGCCGGGAGCTGGGT < 41bp 0.848638252473704 0.6363992913295 0.85628885 0.69949836 prediction 0.424477922288408 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43940942 chr20:43940944 synonymous SNV . 0 23 hm5C_associated_SNPs_87872 0 0 0 0 2 RBPJL chr20:43941035 5'GT 43941035 Upstream 92bp
chr2 108910768 108910768 1 + C T GBM 108910765 + 108910745 108910785 41 GCCAGCGAGCCATCATCCAACACCGCCATCCTTTCATTGAG GCCAGCGAGCCATCATCCAACACTGCCATCCTTTCATTGAG < 41bp 0.724839343168824 0.512601553816022 0.046428174 0.064680934 prediction 0.424475578705604 Functional Loss - SULT1C2 ENSG00000198203 CDS Human protein_coding chr2:108910765 chr2:108910768 nonsynonymous SNV 0.961 5 24 hm5C_associated_SNPs_87873 0 0 0 0 2 SULT1C2 chr2:108910685 3'AG 108910685 Downstream 84bp
chr2 108910768 108910768 1 + C T GBM 108910765 + 108910745 108910785 41 GCCAGCGAGCCATCATCCAACACCGCCATCCTTTCATTGAG GCCAGCGAGCCATCATCCAACACTGCCATCCTTTCATTGAG < 41bp 0.724839343168824 0.512601553816022 0.046428174 0.064680934 prediction 0.424475578705604 Functional Loss - SULT1C2 ENSG00000198203 CDS Human protein_coding chr2:108910765 chr2:108910768 nonsynonymous SNV 0.961 5 24 hm5C_associated_SNPs_87873 0 0 0 0 2 SULT1C2 chr2:108910810 5'GT 108910810 Upstream 43bp
chr14 103800804 103800804 1 + C T rs12896 103800802 + 103800782 103800822 41 TCCCCGCTGCTCGGCGGCGGCACCTGGCCCGGCCGCTCCTC TCCCCGCTGCTCGGCGGCGGCATCTGGCCCGGCCGCTCCTC < 41bp 0.734939926193438 0.522707091680969 0.5070325 0.65245867 prediction 0.424465669024939 Functional Loss - EIF5 ENSG00000100664 UTR5 Human protein_coding chr14:103800802 chr14:103800804 . . 0 23 hm5C_associated_SNPs_87876 0 0 1 0 1 EIF5 chr14:103800726 3'AG 103800726 Downstream 79bp
chr4 48344089 48344089 1 + G C rs116061582 48344088 + 48344068 48344108 41 CTTGCTGGACGAGGTGGAGCCGCTGCGGCCCGACGAGCTGG CTTGCTGGACGAGGTGGAGCCCCTGCGGCCCGACGAGCTGG < 41bp 0.712230475008559 0.411791989737262 0.6636216 0.42328426 prediction 0.424460950017118 Functional Loss - SLAIN2 ENSG00000109171 CDS Human protein_coding chr4:48344088 chr4:48344089 synonymous SNV . 0 22 hm5C_associated_SNPs_87879 0 0 1 0 1 SLAIN2 chr4:48344145 5'GT 48344145 Upstream 57bp
chr22 44332942 44332942 1 + A T LIHC 44332938 + 44332918 44332958 41 GTGCCCTTCACAGGCATCTGCAACAGGCCCCAGCCAGGCCT GTGCCCTTCACAGGCATCTGCAACTGGCCCCAGCCAGGCCT < 41bp 0.712230011960081 0.386229766713767 0.12882209 0.12394208 prediction 0.424460023920162 Functional Loss - PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44332938 chr22:44332942 nonsynonymous SNV 0.385 1 25 hm5C_associated_SNPs_87880 0 0 1 0 1 PNPLA3 chr22:44332931 3'AG 44332931 Downstream 12bp
chr12 49933224 49933224 1 + G A UCEC 49933221 + 49933201 49933241 41 TGCCGGCCATGCGGGGCCTCCTGGCGCCGCAGAACACCTTC TGCCGGCCATGCGGGGCCTCCTGACGCCGCAGAACACCTTC < 41bp 0.801647302061271 0.589418009552258 0.8939035 0.56491673 prediction 0.424458585018025 Functional Loss - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49933221 chr12:49933224 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_87881 0 0 0 0 1 KCNH3 chr12:49933275 5'GT 49933275 Upstream 52bp
chr19 45179628 45179628 1 + G A UCEC 45179625 + 45179605 45179645 41 ATCATTGGATCTCTTGCTGCCGGGGCCCTTCTCATCAGCTG ATCATTGGATCTCTTGCTGCCGGAGCCCTTCTCATCAGCTG < 41bp 0.820756678783996 0.608528117537481 0.8891771 0.8113766 prediction 0.424457122493029 Functional Loss - CEACAM19 ENSG00000186567 CDS Human protein_coding chr19:45179625 chr19:45179628 synonymous SNV . 0 24 hm5C_associated_SNPs_87882 0 0 1 0 2 CEACAM19 chr19:45179543 3'AG 45179543 Downstream 86bp
chr19 45179628 45179628 1 + G A UCEC 45179625 + 45179605 45179645 41 ATCATTGGATCTCTTGCTGCCGGGGCCCTTCTCATCAGCTG ATCATTGGATCTCTTGCTGCCGGAGCCCTTCTCATCAGCTG < 41bp 0.820756678783996 0.608528117537481 0.8891771 0.8113766 prediction 0.424457122493029 Functional Loss - CEACAM19 ENSG00000186567 CDS Human protein_coding chr19:45179625 chr19:45179628 synonymous SNV . 0 24 hm5C_associated_SNPs_87882 0 0 1 0 2 CEACAM19 chr19:45179693 5'GT 45179693 Upstream 66bp
chr17 56329733 56329733 1 + G T UCEC 56329729 + 56329709 56329749 41 TGGCCAGCCGCCTCCGCAACCTCAGCAGCCCCCTGGGCCTC TGGCCAGCCGCCTCCGCAACCTCATCAGCCCCCTGGGCCTC < 41bp 0.734713786562349 0.522485453225467 0.034971654 0.056396633 prediction 0.424456666673764 Functional Loss - LPO ENSG00000167419 CDS Human protein_coding chr17:56329729 chr17:56329733 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_87883 0 0 0 0 1 LPO chr17:56329651 3'AG 56329651 Downstream 83bp
chr8 145134859 145134859 1 + G A rs557258449 145134856 + 145134836 145134876 41 CCTCTTCCAGATCCGGGGCTCCCGGGCTCGAGCCCTGCCGG CCTCTTCCAGATCCGGGGCTCCCAGGCTCGAGCCCTGCCGG < 41bp 0.712227004646969 0.463542179095812 0.9150183 0.8533452 prediction 0.424454009293939 Functional Loss - EXOSC4 ENSG00000178896 CDS Human protein_coding chr8:145134856 chr8:145134859 nonsynonymous SNV 0.976 1 24 hm5C_associated_SNPs_87885 0 0 1 0 1 EXOSC4 chr8:145134846 3'AG 145134846 Downstream 14bp
chr17 42827991 42827991 1 + G T SARC 42827989 + 42827969 42828009 41 AAGGCAGGGCTGCGGGCCAGCAGCGATGGACAGAATCACTA AAGGCAGGGCTGCGGGCCAGCATCGATGGACAGAATCACTA < 41bp 0.712222630496559 0.359624902697254 0.1798678 0.081465244 prediction 0.424445260993117 Functional Loss - DBF4B ENSG00000161692 CDS Human protein_coding chr17:42827989 chr17:42827991 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_87888 0 0 1 0 2 DBF4B chr17:42827963 3'AG 42827963 Downstream 29bp
chr17 42827991 42827991 1 + G T SARC 42827989 + 42827969 42828009 41 AAGGCAGGGCTGCGGGCCAGCAGCGATGGACAGAATCACTA AAGGCAGGGCTGCGGGCCAGCATCGATGGACAGAATCACTA < 41bp 0.712222630496559 0.359624902697254 0.1798678 0.081465244 prediction 0.424445260993117 Functional Loss - DBF4B ENSG00000161692 CDS Human protein_coding chr17:42827989 chr17:42827991 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_87888 0 0 1 0 2 DBF4B chr17:42828045 5'GT 42828045 Upstream 55bp
chr20 30513719 30513719 1 + G A CESC 30513716 + 30513696 30513736 41 GCTCTACCGGGATGGCTTTGCCCGATTCTCCAACACCCGCT GCTCTACCGGGATGGCTTTGCCCAATTCTCCAACACCCGCT < 41bp 0.803654858418194 0.591434119786704 0.11544472 0.028851748 prediction 0.424441477262979 Functional Loss - TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30513716 chr20:30513719 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_87890 0 0 0 0 1 TTLL9 chr20:30513676 3'AG 30513676 Downstream 44bp
chr5 147820753 147820753 1 + C T LGG 147820750 + 147820730 147820770 41 TTGGCTGAGGTCATTACGAGCTGCAGAGCCCAACAGCTTCG TTGGCTGAGGTCATTACGAGCTGTAGAGCCCAACAGCTTCG < 41bp 0.775149595365353 0.56292902370774 0.22171432 0.19164953 prediction 0.424441143315226 Functional Loss - FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147820750 chr5:147820753 nonsynonymous SNV 0.971 4 24 hm5C_associated_SNPs_87891 0 0 1 0 2 FBXO38 chr5:147820687 3'AG 147820687 Downstream 67bp
chr5 147820753 147820753 1 + C T LGG 147820750 + 147820730 147820770 41 TTGGCTGAGGTCATTACGAGCTGCAGAGCCCAACAGCTTCG TTGGCTGAGGTCATTACGAGCTGTAGAGCCCAACAGCTTCG < 41bp 0.775149595365353 0.56292902370774 0.22171432 0.19164953 prediction 0.424441143315226 Functional Loss - FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147820750 chr5:147820753 nonsynonymous SNV 0.971 4 24 hm5C_associated_SNPs_87891 0 0 1 0 2 FBXO38 chr5:147820800 5'GT 147820800 Upstream 48bp
chr15 38643281 38643281 1 + C T SKCM 38643279 + 38643259 38643299 41 TGAGATTGTCAGAATAAACCCTCGAGATATCTTAATACGTC TGAGATTGTCAGAATAAACCCTTGAGATATCTTAATACGTC < 41bp 0.71222040650642 0.419507066691379 0.42373183 0.082900316 prediction 0.42444081301284 Functional Loss - SPRED1 ENSG00000166068 CDS Human protein_coding chr15:38643279 chr15:38643281 stopgain 1.000 1 23 hm5C_associated_SNPs_87892 0 0 1 0 1 SPRED1 chr15:38643215 3'AG 38643215 Downstream 67bp
chr2 37014329 37014329 1 + G T UCEC 37014325 + 37014305 37014345 41 GGAGCACCAGCATTGGCAAACGGCGATTCCGAATCCAGAAG GGAGCACCAGCATTGGCAAACGGCTATTCCGAATCCAGAAG < 41bp 0.713864727545847 0.501644623936327 0.37304202 0.4256065 prediction 0.424440207219041 Functional Loss - VIT ENSG00000205221 CDS Human protein_coding chr2:37014325 chr2:37014329 nonsynonymous SNV 0.726 5 25 hm5C_associated_SNPs_87893 0 0 0 0 2 VIT chr2:37014272 3'AG 37014272 Downstream 58bp
chr2 37014329 37014329 1 + G T UCEC 37014325 + 37014305 37014345 41 GGAGCACCAGCATTGGCAAACGGCGATTCCGAATCCAGAAG GGAGCACCAGCATTGGCAAACGGCTATTCCGAATCCAGAAG < 41bp 0.713864727545847 0.501644623936327 0.37304202 0.4256065 prediction 0.424440207219041 Functional Loss - VIT ENSG00000205221 CDS Human protein_coding chr2:37014325 chr2:37014329 nonsynonymous SNV 0.726 5 25 hm5C_associated_SNPs_87893 0 0 0 0 2 VIT chr2:37014419 5'GT 37014419 Upstream 91bp
chr11 985532 985532 1 + G A COAD 985529 + 985509 985549 41 AAGAAGGTCCAGCACTCCAACGCGAAGAATGCCGTGCTCTT AAGAAGGTCCAGCACTCCAACGCAAAGAATGCCGTGCTCTT < 41bp 0.799340064751458 0.587123636319113 0.7394445 0.24847597 prediction 0.424432856864691 Functional Loss - AP2A2 ENSG00000183020 CDS Human protein_coding chr11:985529 chr11:985532 synonymous SNV . 0 24 hm5C_associated_SNPs_87895 0 0 1 0 2 AP2A2 chr11:985435 3'AG 985435 Downstream 98bp
chr11 985532 985532 1 + G A COAD 985529 + 985509 985549 41 AAGAAGGTCCAGCACTCCAACGCGAAGAATGCCGTGCTCTT AAGAAGGTCCAGCACTCCAACGCAAAGAATGCCGTGCTCTT < 41bp 0.799340064751458 0.587123636319113 0.7394445 0.24847597 prediction 0.424432856864691 Functional Loss - AP2A2 ENSG00000183020 CDS Human protein_coding chr11:985529 chr11:985532 synonymous SNV . 0 24 hm5C_associated_SNPs_87895 0 0 1 0 2 AP2A2 chr11:985582 5'GT 985582 Upstream 51bp
chr19 54403976 54403976 1 + C T STAD 54403973 + 54403953 54403993 41 GGGACGACAACCCGCACCTTCTGCGGGACCCCGGACTACAT GGGACGACAACCCGCACCTTCTGTGGGACCCCGGACTACAT < 41bp 0.768782110624705 0.556565951259569 0.2598212 0.2734154 prediction 0.424432318730272 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403973 chr19:54403976 synonymous SNV . 0 24 hm5C_associated_SNPs_87896 0 0 0 0 1 PRKCG chr19:54404003 5'GT 54404003 Upstream 28bp
chr18 19756976 19756976 1 + C T LIHC 19756973 + 19756953 19756993 41 GAACTGCGGCTCCATCCAGACGCCGCTGTGGCGGCGGGACG GAACTGCGGCTCCATCCAGACGCTGCTGTGGCGGCGGGACG < 41bp 0.724006854183079 0.511791254006388 0.073066324 0.13576785 prediction 0.424431200353383 Functional Loss - GATA6 ENSG00000141448 CDS Human protein_coding chr18:19756973 chr18:19756976 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_87897 0 0 0 0 1 GATA6 chr18:19756916 3'AG 19756916 Downstream 61bp
chr7 143018907 143018907 1 + C T UCEC 143018904 + 143018884 143018924 41 GGCCAAGGTTGTCGCCCTGACTGCGGGCCTGGGCAGTGGCA GGCCAAGGTTGTCGCCCTGACTGTGGGCCTGGGCAGTGGCA < 41bp 0.74107930812824 0.528867220223671 0.105514646 0.041128695 prediction 0.424424175809137 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143018904 chr7:143018907 nonsynonymous SNV 0.144 3 24 hm5C_associated_SNPs_87898 0 0 0 0 2 CLCN1 chr7:143018808 3'AG 143018808 Downstream 100bp
chr7 143018907 143018907 1 + C T UCEC 143018904 + 143018884 143018924 41 GGCCAAGGTTGTCGCCCTGACTGCGGGCCTGGGCAGTGGCA GGCCAAGGTTGTCGCCCTGACTGTGGGCCTGGGCAGTGGCA < 41bp 0.74107930812824 0.528867220223671 0.105514646 0.041128695 prediction 0.424424175809137 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143018904 chr7:143018907 nonsynonymous SNV 0.144 3 24 hm5C_associated_SNPs_87898 0 0 0 0 2 CLCN1 chr7:143018941 5'GT 143018941 Upstream 35bp
chr19 9490247 9490247 1 + G T UCEC 9490244 + 9490224 9490264 41 GTCTGATCTCCAAGGTGGATCAAGAACAGCTGAAGACAGAT GTCTGATCTCCAAGGTGGATCAATAACAGCTGAAGACAGAT < 41bp 0.712209213551783 0.314686185976319 0.54626656 0.36268133 prediction 0.424418427103566 Functional Loss - ZNF177;ZNF559-ZNF177 ENSG00000188629;ENSG00000270011 CDS Human other chr19:9490244 chr19:9490247 stopgain 0.002 0 24 hm5C_associated_SNPs_87899 0 0 1 0 1 ZNF177;ZNF559-ZNF177 chr19:9490295 5'GT 9490295 Upstream 49bp
chr8 104337700 104337700 1 + C T PRAD 104337697 + 104337677 104337717 41 CTTGGGTCTCTGATCATTGTCGTCAGTACCATATCCCATGT CTTGGGTCTCTGATCATTGTCGTTAGTACCATATCCCATGT < 41bp 0.739680146818675 0.527471782187616 0.16854131 0.13373429 prediction 0.424416729262117 Functional Loss - FZD6 ENSG00000164930 CDS Human protein_coding chr8:104337697 chr8:104337700 stopgain 1.000 0 24 hm5C_associated_SNPs_87900 0 0 1 0 1 FZD6 chr8:104337726 5'GT 104337726 Upstream 27bp
chr19 45127262 45127262 1 + G A rs548830386 45127259 + 45127239 45127279 41 GTCTCTGAGCCTGTAACCATCTCGCTGCCAAGTGAGTCCCC GTCTCTGAGCCTGTAACCATCTCACTGCCAAGTGAGTCCCC < 41bp 0.712202181078151 0.457709867257233 0.18200532 0.064973176 prediction 0.424404362156301 Functional Loss - IGSF23 ENSG00000216588 CDS Human protein_coding chr19:45127259 chr19:45127262 synonymous SNV . 0 24 hm5C_associated_SNPs_87904 0 0 0 0 1 IGSF23 chr19:45127269 5'GT 45127269 Upstream 8bp
chrX 153049765 153049765 1 + G A rs138365237 153049762 + 153049742 153049782 41 TCCCCAGCACCATTCGGTGCCTCGAACCTCCTGGTGAACCC TCCCCAGCACCATTCGGTGCCTCAAACCTCCTGGTGAACCC < 41bp 0.712201281241199 0.470236716671787 0.8212 0.73361576 prediction 0.424402562482398 Functional Loss - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153049762 chrX:153049765 synonymous SNV . 0 24 hm5C_associated_SNPs_87905 0 0 0 0 2 SRPK3 chrX:153049749 3'AG 153049749 Downstream 17bp
chrX 153049765 153049765 1 + G A rs138365237 153049762 + 153049742 153049782 41 TCCCCAGCACCATTCGGTGCCTCGAACCTCCTGGTGAACCC TCCCCAGCACCATTCGGTGCCTCAAACCTCCTGGTGAACCC < 41bp 0.712201281241199 0.470236716671787 0.8212 0.73361576 prediction 0.424402562482398 Functional Loss - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153049762 chrX:153049765 synonymous SNV . 0 24 hm5C_associated_SNPs_87905 0 0 0 0 2 SRPK3 chrX:153049849 5'GT 153049849 Upstream 85bp
chrX 153049766 153049766 1 + A T COAD 153049762 + 153049742 153049782 41 TCCCCAGCACCATTCGGTGCCTCGAACCTCCTGGTGAACCC TCCCCAGCACCATTCGGTGCCTCGTACCTCCTGGTGAACCC < 41bp 0.712201281241199 0.363842112622347 0.8212 0.10076201 prediction 0.424402562482398 Functional Loss - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153049762 chrX:153049766 nonsynonymous SNV 0.972 0 25 hm5C_associated_SNPs_87906 0 0 0 0 2 SRPK3 chrX:153049749 3'AG 153049749 Downstream 18bp
chrX 153049766 153049766 1 + A T COAD 153049762 + 153049742 153049782 41 TCCCCAGCACCATTCGGTGCCTCGAACCTCCTGGTGAACCC TCCCCAGCACCATTCGGTGCCTCGTACCTCCTGGTGAACCC < 41bp 0.712201281241199 0.363842112622347 0.8212 0.10076201 prediction 0.424402562482398 Functional Loss - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153049762 chrX:153049766 nonsynonymous SNV 0.972 0 25 hm5C_associated_SNPs_87906 0 0 0 0 2 SRPK3 chrX:153049849 5'GT 153049849 Upstream 84bp
chrY 15024901 15024901 1 + G A SKCM 15024898 + 15024878 15024918 41 ACTGTTTTCTGGAGGAAACACGGGGATTAACTTTGAGAAAT ACTGTTTTCTGGAGGAAACACGGAGATTAACTTTGAGAAAT < 41bp 0.762357533811809 0.550157542209536 0.922729 0.9083548 prediction 0.424399983204546 Functional Loss - DDX3Y ENSG00000067048 CDS Human protein_coding chrY:15024898 chrY:15024901 nonsynonymous SNV 0.666 2 24 hm5C_associated_SNPs_87908 0 0 1 0 2 DDX3Y chrY:15024875 3'AG 15024875 Downstream 27bp
chrY 15024901 15024901 1 + G A SKCM 15024898 + 15024878 15024918 41 ACTGTTTTCTGGAGGAAACACGGGGATTAACTTTGAGAAAT ACTGTTTTCTGGAGGAAACACGGAGATTAACTTTGAGAAAT < 41bp 0.762357533811809 0.550157542209536 0.922729 0.9083548 prediction 0.424399983204546 Functional Loss - DDX3Y ENSG00000067048 CDS Human protein_coding chrY:15024898 chrY:15024901 nonsynonymous SNV 0.666 2 24 hm5C_associated_SNPs_87908 0 0 1 0 2 DDX3Y chrY:15024974 5'GT 15024974 Upstream 74bp
chr22 42950004 42950004 1 + A C rs140910717 42950003 + 42949983 42950023 41 CAGGCGTGAGGGAGTGACAGCAGCGCATTCGCGGGACGAGA CAGGCGTGAGGGAGTGACAGCCGCGCATTCGCGGGACGAGA < 41bp 0.712199810979635 0.460956539717109 0.8142651 0.6923121 prediction 0.42439962195927 Functional Loss - SERHL2 ENSG00000183569 UTR5 Human protein_coding chr22:42950003 chr22:42950004 . . 0 22 hm5C_associated_SNPs_87909 0 0 1 0 1 SERHL2 chr22:42950048 5'GT 42950048 Upstream 45bp
chr4 106766643 106766643 1 + C T LGG 106766640 + 106766620 106766660 41 GGATCTGGATCGAGCAAGAGCTGCAGAAGAATGTGGATACT GGATCTGGATCGAGCAAGAGCTGTAGAAGAATGTGGATACT < 41bp 0.712199217942466 0.480456293310156 0.32724574 0.15177003 prediction 0.424398435884932 Functional Loss - GSTCD ENSG00000138780 CDS Human protein_coding chr4:106766640 chr4:106766643 nonsynonymous SNV 0.980 4 24 hm5C_associated_SNPs_87911 0 0 1 0 1 GSTCD chr4:106766598 3'AG 106766598 Downstream 46bp
chr9 139235390 139235390 1 + G A rs200756659 139235387 + 139235367 139235407 41 TGGCGCAGCTGCAGCTGGTGCTCGGCCGCCTGACCAGCCCG TGGCGCAGCTGCAGCTGGTGCTCAGCCGCCTGACCAGCCCG < 41bp 0.712196479797746 0.451171844482387 0.23933601 0.10803327 prediction 0.424392959595491 Functional Loss - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139235387 chr9:139235390 nonsynonymous SNV 0.295 5 24 hm5C_associated_SNPs_87913 0 0 1 0 1 GPSM1 chr9:139235327 3'AG 139235327 Downstream 64bp
chr9 96305693 96305693 1 + C T LUAD 96305690 + 96305670 96305710 41 GGCCTGCATGAGGTCGGACACCCCAGCCATGCTCAACCCTG GGCCTGCATGAGGTCGGACACCCTAGCCATGCTCAACCCTG < 41bp 0.763235819299506 0.551043684066817 0.23749834 0.15558356 prediction 0.424384270465378 Functional Loss - FAM120A ENSG00000048828 CDS Human protein_coding chr9:96305690 chr9:96305693 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_87916 0 0 1 0 1 FAM120A chr9:96305753 5'GT 96305753 Upstream 61bp
chr1 178490357 178490357 1 + G A SKCM 178490354 + 178490334 178490374 41 TGTGCCGTTTCTGTCCTCTGCAGGAGAAATGTTTGTTGTGT TGTGCCGTTTCTGTCCTCTGCAGAAGAAATGTTTGTTGTGT < 41bp 0.768224833247906 0.556034123441377 0.29032892 0.08980954 prediction 0.424381419613058 Functional Loss - TEX35 ENSG00000240021 CDS Human protein_coding chr1:178490354 chr1:178490357 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_87917 0 0 0 0 2 TEX35 chr1:178490357 3'AG 178490357 Downstream 1bp
chr1 178490357 178490357 1 + G A SKCM 178490354 + 178490334 178490374 41 TGTGCCGTTTCTGTCCTCTGCAGGAGAAATGTTTGTTGTGT TGTGCCGTTTCTGTCCTCTGCAGAAGAAATGTTTGTTGTGT < 41bp 0.768224833247906 0.556034123441377 0.29032892 0.08980954 prediction 0.424381419613058 Functional Loss - TEX35 ENSG00000240021 CDS Human protein_coding chr1:178490354 chr1:178490357 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_87917 0 0 0 0 2 TEX35 chr1:178490399 5'GT 178490399 Upstream 43bp
chr5 148997777 148997777 1 + G T LUAD 148997773 + 148997753 148997793 41 AAGGTAGAGCAGCTGACCCTCCGGGAGCGGCTGGCCCGCAT AAGGTAGAGCAGCTGACCCTCCGGTAGCGGCTGGCCCGCAT < 41bp 0.71218717689546 0.492145157656819 0.71740156 0.23873189 prediction 0.424374353790919 Functional Loss - ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:148997773 chr5:148997777 stopgain 0.993 1 25 hm5C_associated_SNPs_87918 0 0 0 0 1 ARHGEF37 chr5:148997739 3'AG 148997739 Downstream 39bp
chr19 13862487 13862487 1 + G A rs187293806 13862484 + 13862464 13862504 41 TGTCTGAGCTGGCACCACCACACGGCCCACGACATCTTCGC TGTCTGAGCTGGCACCACCACACAGCCCACGACATCTTCGC < 41bp 0.712186432680549 0.481065696269715 0.15378988 0.048136473 prediction 0.424372865361099 Functional Loss - CCDC130 ENSG00000104957 UTR5 Human protein_coding chr19:13862484 chr19:13862487 . . 0 24 hm5C_associated_SNPs_87919 0 0 0 0 1 CCDC130 chr19:13862422 3'AG 13862422 Downstream 66bp
chr11 213377 213377 1 + C T rs75503761 213375 + 213355 213395 41 TGACAGAGGAGCAGAAGGAGCACGAGGCCATGAAGCTGGTG TGACAGAGGAGCAGAAGGAGCATGAGGCCATGAAGCTGGTG < 41bp 0.853839320663181 0.641654118205133 0.38942453 0.33259612 prediction 0.424370404916096 Functional Loss - RIC8A ENSG00000177963 CDS Human protein_coding chr11:213375 chr11:213377 synonymous SNV . 0 23 hm5C_associated_SNPs_87920 0 0 0 0 2 RIC8A chr11:213299 3'AG 213299 Downstream 79bp
chr11 213377 213377 1 + C T rs75503761 213375 + 213355 213395 41 TGACAGAGGAGCAGAAGGAGCACGAGGCCATGAAGCTGGTG TGACAGAGGAGCAGAAGGAGCATGAGGCCATGAAGCTGGTG < 41bp 0.853839320663181 0.641654118205133 0.38942453 0.33259612 prediction 0.424370404916096 Functional Loss - RIC8A ENSG00000177963 CDS Human protein_coding chr11:213375 chr11:213377 synonymous SNV . 0 23 hm5C_associated_SNPs_87920 0 0 0 0 2 RIC8A chr11:213418 5'GT 213418 Upstream 42bp
chr17 7286790 7286790 1 + C T STAD 7286788 + 7286768 7286808 41 CACAAGGAGCCCACCCTGCCCTCGGACAGCCCACGGCACCT CACAAGGAGCCCACCCTGCCCTTGGACAGCCCACGGCACCT < 41bp 0.821002293358706 0.608817867310701 0.052628636 0.042672157 prediction 0.424368852096009 Functional Loss - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7286788 chr17:7286790 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_87921 0 0 1 0 1 TNK1 chr17:7286744 3'AG 7286744 Downstream 47bp
chr15 25436399 25436399 1 + G T LUSC 25436397 + 25436377 25436417 41 ACCCTTCCAGATGGTGACCCCAGAGGAAGACTTGCGTTGGG ACCCTTCCAGATGGTGACCCCATAGGAAGACTTGCGTTGGG < 41bp 0.712182956877669 0.378206828212893 0.8804283 0.33653566 prediction 0.424365913755338 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25436397 chr15:25436399 . . 0 23 hm5C_associated_SNPs_87922 0 0 0 0 1 SNHG14 chr15:25436497 5'GT 25436497 Upstream 99bp
chr21 47987298 47987298 1 + G A PRAD 47987295 + 47987275 47987315 41 CTCTGCAGTGCCGTATTCACCTGGACCAACCTGCTGGTGGT CTCTGCAGTGCCGTATTCACCTGAACCAACCTGCTGGTGGT < 41bp 0.762918956603323 0.550740323225209 0.7844057 0.29758927 prediction 0.424357266756228 Functional Loss - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47987295 chr21:47987298 stopgain 1.000 1 24 hm5C_associated_SNPs_87923 0 0 1 4 1 DIP2A chr21:47987283 3'AG 47987283 Downstream 16bp
chr14 100795338 100795338 1 + G A rs8015259 100795335 + 100795315 100795355 41 GCCACCTACTTCCTTTCCTACGCGGTCCTCTGCGAGTGGCT GCCACCTACTTCCTTTCCTACGCAGTCCTCTGCGAGTGGCT < 41bp 0.712176341876229 0.459840192398489 0.15553957 0.048443437 prediction 0.424352683752458 Functional Loss - SLC25A47 ENSG00000140107 CDS Human protein_coding chr14:100795335 chr14:100795338 synonymous SNV . 0 24 hm5C_associated_SNPs_87926 0 0 0 0 1 SLC25A47 chr14:100795381 5'GT 100795381 Upstream 44bp
chr16 31382535 31382535 1 + G T COAD 31382531 + 31382511 31382551 41 CCCGGGGCCAGGTGCTCCTGCTCAGGTGAGAGCAGCCTTTC CCCGGGGCCAGGTGCTCCTGCTCATGTGAGAGCAGCCTTTC < 41bp 0.712171803124653 0.497561089833327 0.6955898 0.70114934 prediction 0.424343606249306 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31382531 chr16:31382535 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_87930 0 0 0 0 1 ITGAX chr16:31382535 5'GT 31382535 Upstream 1bp
chrX 152085689 152085689 1 + G A SKCM 152085686 + 152085666 152085706 41 CTTCGGCAGGCCTCCGAGCACAAGGGCTCCCACTGGCTACA CTTCGGCAGGCCTCCGAGCACAAAGGCTCCCACTGGCTACA < 41bp 0.816552640369491 0.60438289341424 0.86488223 0.19635746 prediction 0.424339493910503 Functional Loss - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152085686 chrX:152085689 nonsynonymous SNV 0.448 0 24 hm5C_associated_SNPs_87931 0 0 0 0 2 ZNF185 chrX:152085675 3'AG 152085675 Downstream 15bp
chrX 152085689 152085689 1 + G A SKCM 152085686 + 152085666 152085706 41 CTTCGGCAGGCCTCCGAGCACAAGGGCTCCCACTGGCTACA CTTCGGCAGGCCTCCGAGCACAAAGGCTCCCACTGGCTACA < 41bp 0.816552640369491 0.60438289341424 0.86488223 0.19635746 prediction 0.424339493910503 Functional Loss - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152085686 chrX:152085689 nonsynonymous SNV 0.448 0 24 hm5C_associated_SNPs_87931 0 0 0 0 2 ZNF185 chrX:152085713 5'GT 152085713 Upstream 25bp
chr15 76452509 76452509 1 + G T UCEC 76452505 + 76452485 76452525 41 CATTCTGTCCGTGTTCTTCTCAGAGGTAGGTGGAGACTCTG CATTCTGTCCGTGTTCTTCTCAGATGTAGGTGGAGACTCTG < 41bp 0.71923372065233 0.507066091685095 0.9386709 0.9067637 prediction 0.424335257934471 Functional Loss - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76452505 chr15:76452509 nonsynonymous SNV 0.991 5 25 hm5C_associated_SNPs_87933 0 0 0 0 2 TMEM266 chr15:76452436 3'AG 76452436 Downstream 74bp
chr15 76452509 76452509 1 + G T UCEC 76452505 + 76452485 76452525 41 CATTCTGTCCGTGTTCTTCTCAGAGGTAGGTGGAGACTCTG CATTCTGTCCGTGTTCTTCTCAGATGTAGGTGGAGACTCTG < 41bp 0.71923372065233 0.507066091685095 0.9386709 0.9067637 prediction 0.424335257934471 Functional Loss - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76452505 chr15:76452509 nonsynonymous SNV 0.991 5 25 hm5C_associated_SNPs_87933 0 0 0 0 2 TMEM266 chr15:76452509 5'GT 76452509 Upstream 1bp
chr9 102992043 102992043 1 + G T ESCA 102992040 + 102992020 102992060 41 GGGATTCCTGATGTTGAAGGCAAGATCCCACTTCACTGGGC GGGATTCCTGATGTTGAAGGCAATATCCCACTTCACTGGGC < 41bp 0.712159367108433 0.325232544652632 0.24511227 0.1126582 prediction 0.424318734216865 Functional Loss - INVS ENSG00000119509 CDS Human protein_coding chr9:102992040 chr9:102992043 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_87938 0 0 1 0 1 INVS chr9:102992109 5'GT 102992109 Upstream 67bp
chr19 55014124 55014124 1 + G A rs2287828 55014121 + 55014101 55014141 41 CTTGTGTCTGCTGCAGAGTTCTGGGACCGGGGCCATGTCTC CTTGTGTCTGCTGCAGAGTTCTGAGACCGGGGCCATGTCTC < 41bp 0.712152339621151 0.470834463765518 0.91768295 0.8942913 prediction 0.424304679242302 Functional Loss - LAIR2 ENSG00000167618 UTR5 Human protein_coding chr19:55014121 chr19:55014124 . . 0 24 hm5C_associated_SNPs_87941 0 0 0 0 1 LAIR2 chr19:55014168 5'GT 55014168 Upstream 45bp
chr17 6690673 6690673 1 + G A SKCM 6690670 + 6690650 6690690 41 ATGAAGAGGACAAGACCCTGCAGGAAATTTACAGGAAGTAC ATGAAGAGGACAAGACCCTGCAGAAAATTTACAGGAAGTAC < 41bp 0.712149372723932 0.489011186920652 0.8011845 0.31254756 prediction 0.424298745447864 Functional Loss - FBXO39 ENSG00000177294 CDS Human protein_coding chr17:6690670 chr17:6690673 nonsynonymous SNV 0.983 1 24 hm5C_associated_SNPs_87942 0 0 0 0 1 FBXO39 chr17:6690619 3'AG 6690619 Downstream 55bp
chrX 37664306 37664306 1 + G T COAD 37664304 + 37664284 37664324 41 ACTGCCAGTGAAGATGTGTTCAGCTATGAGGTGGTGATGTT ACTGCCAGTGAAGATGTGTTCATCTATGAGGTGGTGATGTT < 41bp 0.712148809331616 0.35795442535541 0.25398976 0.14443582 prediction 0.424297618663231 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37664304 chrX:37664306 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_87943 0 0 0 0 1 CYBB chrX:37664259 3'AG 37664259 Downstream 48bp
chr6 70866590 70866590 1 + G T SKCM 70866587 + 70866567 70866607 41 CAAAGGAGAGCGGGGCTACCCTGGGATACCTGGGGAGAAAG CAAAGGAGAGCGGGGCTACCCTGTGATACCTGGGGAGAAAG < 41bp 0.712148491216779 0.343405938311766 0.9020052 0.45752698 prediction 0.424296982433557 Functional Loss - COL19A1 ENSG00000082293 CDS Human protein_coding chr6:70866587 chr6:70866590 nonsynonymous SNV 0.874 3 24 hm5C_associated_SNPs_87944 0 0 0 0 2 COL19A1 chr6:70866562 3'AG 70866562 Downstream 29bp
chr6 70866590 70866590 1 + G T SKCM 70866587 + 70866567 70866607 41 CAAAGGAGAGCGGGGCTACCCTGGGATACCTGGGGAGAAAG CAAAGGAGAGCGGGGCTACCCTGTGATACCTGGGGAGAAAG < 41bp 0.712148491216779 0.343405938311766 0.9020052 0.45752698 prediction 0.424296982433557 Functional Loss - COL19A1 ENSG00000082293 CDS Human protein_coding chr6:70866587 chr6:70866590 nonsynonymous SNV 0.874 3 24 hm5C_associated_SNPs_87944 0 0 0 0 2 COL19A1 chr6:70866615 5'GT 70866615 Upstream 26bp
chr1 18688694 18688694 1 + C T SKCM 18688691 + 18688671 18688711 41 GCCCAGAACTTCACGCTGGTCTGCATCGTGTCTGGAGGAAA GCCCAGAACTTCACGCTGGTCTGTATCGTGTCTGGAGGAAA < 41bp 0.764456688374039 0.552308725757868 0.2454232 0.06091386 prediction 0.424295925232343 Functional Loss - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18688691 chr1:18688694 synonymous SNV . 0 24 hm5C_associated_SNPs_87946 0 0 0 0 2 IGSF21 chr1:18688609 3'AG 18688609 Downstream 86bp
chr1 18688694 18688694 1 + C T SKCM 18688691 + 18688671 18688711 41 GCCCAGAACTTCACGCTGGTCTGCATCGTGTCTGGAGGAAA GCCCAGAACTTCACGCTGGTCTGTATCGTGTCTGGAGGAAA < 41bp 0.764456688374039 0.552308725757868 0.2454232 0.06091386 prediction 0.424295925232343 Functional Loss - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18688691 chr1:18688694 synonymous SNV . 0 24 hm5C_associated_SNPs_87946 0 0 0 0 2 IGSF21 chr1:18688724 5'GT 18688724 Upstream 31bp
chr6 55196590 55196590 1 + G A SKCM 55196587 + 55196567 55196607 41 ATTTAAGAGAGCAATGCTTACGTGATGCAAATGGATGTAAA ATTTAAGAGAGCAATGCTTACGTAATGCAAATGGATGTAAA < 41bp 0.712145757355411 0.484812249092867 0.804307 0.23628128 prediction 0.424291514710822 Functional Loss - GFRAL ENSG00000187871 CDS Human protein_coding chr6:55196587 chr6:55196590 nonsynonymous SNV 0.019 1 24 hm5C_associated_SNPs_87948 0 0 0 0 2 GFRAL chr6:55196513 3'AG 55196513 Downstream 78bp
chr6 55196590 55196590 1 + G A SKCM 55196587 + 55196567 55196607 41 ATTTAAGAGAGCAATGCTTACGTGATGCAAATGGATGTAAA ATTTAAGAGAGCAATGCTTACGTAATGCAAATGGATGTAAA < 41bp 0.712145757355411 0.484812249092867 0.804307 0.23628128 prediction 0.424291514710822 Functional Loss - GFRAL ENSG00000187871 CDS Human protein_coding chr6:55196587 chr6:55196590 nonsynonymous SNV 0.019 1 24 hm5C_associated_SNPs_87948 0 0 0 0 2 GFRAL chr6:55196647 5'GT 55196647 Upstream 58bp
chr4 123748452 123748452 1 + G T LUAD 123748450 + 123748430 123748470 41 GCAAAAACGGGGGCTTCTTCCTGCGCATCCACCCCGACGGC GCAAAAACGGGGGCTTCTTCCTTCGCATCCACCCCGACGGC < 41bp 0.906392866295745 0.694249715446784 0.21735129 0.09523529 prediction 0.424286301697922 Functional Loss - FGF2 ENSG00000138685 CDS Human protein_coding chr4:123748450 chr4:123748452 synonymous SNV . 0 23 hm5C_associated_SNPs_87949 0 0 1 0 1 FGF2 chr4:123748507 5'GT 123748507 Upstream 56bp
chr11 47307122 47307122 1 + G A GBM 47307119 + 47307099 47307139 41 AACACCAGCACCGAGGGCTTCGGGGGCATCATGTCTTTTGC AACACCAGCACCGAGGGCTTCGGAGGCATCATGTCTTTTGC < 41bp 0.712141774569727 0.477426987738779 0.93813026 0.90615624 prediction 0.424283549139455 Functional Loss - MADD ENSG00000110514 CDS Human protein_coding chr11:47307119 chr11:47307122 synonymous SNV . 0 24 hm5C_associated_SNPs_87950 0 0 1 0 1 MADD chr11:47307141 5'GT 47307141 Upstream 20bp
chr11 70201888 70201888 1 + G A KIRC 70201885 + 70201865 70201905 41 CAAGAAAGAAAAGGGCCGACCTGGACAAACTGGCAAAGAAG CAAGAAAGAAAAGGGCCGACCTGAACAAACTGGCAAAGAAG < 41bp 0.712138518306585 0.471954579267516 0.25370365 0.063868016 prediction 0.424277036613171 Functional Loss - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70201885 chr11:70201888 nonsynonymous SNV 0.018 0 24 hm5C_associated_SNPs_87952 0 0 1 0 1 PPFIA1 chr11:70201917 5'GT 70201917 Upstream 30bp
chr5 1033518 1033518 1 + C T UCEC 1033516 + 1033496 1033536 41 CCGCTGAGAAAGCTGAGGGCCGCGAGCACCCGGGACAACTC CCGCTGAGAAAGCTGAGGGCCGTGAGCACCCGGGACAACTC < 41bp 0.837027996545138 0.624893339539404 0.84274703 0.6864363 prediction 0.424269314011469 Functional Loss - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1033516 chr5:1033518 synonymous SNV . 0 23 hm5C_associated_SNPs_87955 0 0 0 0 2 NKD2 chr5:1033487 3'AG 1033487 Downstream 32bp
chr5 1033518 1033518 1 + C T UCEC 1033516 + 1033496 1033536 41 CCGCTGAGAAAGCTGAGGGCCGCGAGCACCCGGGACAACTC CCGCTGAGAAAGCTGAGGGCCGTGAGCACCCGGGACAACTC < 41bp 0.837027996545138 0.624893339539404 0.84274703 0.6864363 prediction 0.424269314011469 Functional Loss - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1033516 chr5:1033518 synonymous SNV . 0 23 hm5C_associated_SNPs_87955 0 0 0 0 2 NKD2 chr5:1033614 5'GT 1033614 Upstream 97bp
chr19 3527704 3527704 1 + C T SKCM 3527702 + 3527682 3527722 41 CCTTCAAGGTGCTGGACGCGCCCGAGCTGCAGGACGACTTC CCTTCAAGGTGCTGGACGCGCCTGAGCTGCAGGACGACTTC < 41bp 0.843350680412505 0.63122462767609 0.18948168 0.20059824 prediction 0.424252105472829 Functional Loss - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3527702 chr19:3527704 synonymous SNV . 0 23 hm5C_associated_SNPs_87960 0 0 0 0 1 FZR1 chr19:3527629 3'AG 3527629 Downstream 76bp
chr21 47544599 47544599 1 + G A rs147158850 47544596 + 47544576 47544616 41 TCCCCCTGGTGAGCCAGGCCCTCGGGGGCCAAGAGGAGTCC TCCCCCTGGTGAGCCAGGCCCTCAGGGGCCAAGAGGAGTCC < 41bp 0.712124886056493 0.456768987216797 0.41793507 0.27316633 prediction 0.424249772112987 Functional Loss - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47544596 chr21:47544599 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_87961 2 0 1 0 2 COL6A2 chr21:47544565 3'AG 47544565 Downstream 35bp
chr21 47544599 47544599 1 + G A rs147158850 47544596 + 47544576 47544616 41 TCCCCCTGGTGAGCCAGGCCCTCGGGGGCCAAGAGGAGTCC TCCCCCTGGTGAGCCAGGCCCTCAGGGGCCAAGAGGAGTCC < 41bp 0.712124886056493 0.456768987216797 0.41793507 0.27316633 prediction 0.424249772112987 Functional Loss - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47544596 chr21:47544599 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_87961 2 0 1 0 2 COL6A2 chr21:47544627 5'GT 47544627 Upstream 29bp
chr10 71003096 71003096 1 + G A rs202105296 71003093 + 71003073 71003113 41 AGTTCGACAGGGAGCTGGACCTCGGCTCTCTCAACCCAGGA AGTTCGACAGGGAGCTGGACCTCAGCTCTCTCAACCCAGGA < 41bp 0.821534766008243 0.609412077516456 0.37103045 0.23307174 prediction 0.424245376983574 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71003093 chr10:71003096 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_87963 1 0 0 0 1 HKDC1 chr10:71003121 5'GT 71003121 Upstream 26bp
chr19 35657168 35657168 1 + C T COAD 35657165 + 35657145 35657185 41 TCTCTGCAGATGAACACACCCTCCGGAAACGGGGGCTGTTG TCTCTGCAGATGAACACACCCTCTGGAAACGGGGGCTGTTG < 41bp 0.712119161738714 0.475240560149429 0.065050304 0.03401786 prediction 0.424238323477429 Functional Loss - FXYD5 ENSG00000089327 CDS Human protein_coding chr19:35657165 chr19:35657168 nonsynonymous SNV 0.964 4 24 hm5C_associated_SNPs_87965 0 0 1 0 2 FXYD5 chr19:35657154 3'AG 35657154 Downstream 15bp
chr19 35657168 35657168 1 + C T COAD 35657165 + 35657145 35657185 41 TCTCTGCAGATGAACACACCCTCCGGAAACGGGGGCTGTTG TCTCTGCAGATGAACACACCCTCTGGAAACGGGGGCTGTTG < 41bp 0.712119161738714 0.475240560149429 0.065050304 0.03401786 prediction 0.424238323477429 Functional Loss - FXYD5 ENSG00000089327 CDS Human protein_coding chr19:35657165 chr19:35657168 nonsynonymous SNV 0.964 4 24 hm5C_associated_SNPs_87965 0 0 1 0 2 FXYD5 chr19:35657228 5'GT 35657228 Upstream 61bp
chr6 44115180 44115180 1 + G A UCEC 44115177 + 44115157 44115197 41 AGCAAGGAGAACGTGCCTACCATGATCAACCCCAAGCCCTG AGCAAGGAGAACGTGCCTACCATAATCAACCCCAAGCCCTG < 41bp 0.802758514356925 0.590643226176055 0.117010355 0.090115905 prediction 0.424230576361741 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44115177 chr6:44115180 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_87969 0 0 1 0 2 TMEM63B chr6:44115114 3'AG 44115114 Downstream 67bp
chr6 44115180 44115180 1 + G A UCEC 44115177 + 44115157 44115197 41 AGCAAGGAGAACGTGCCTACCATGATCAACCCCAAGCCCTG AGCAAGGAGAACGTGCCTACCATAATCAACCCCAAGCCCTG < 41bp 0.802758514356925 0.590643226176055 0.117010355 0.090115905 prediction 0.424230576361741 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44115177 chr6:44115180 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_87969 0 0 1 0 2 TMEM63B chr6:44115237 5'GT 44115237 Upstream 58bp
chr3 121658294 121658294 1 + T C LUAD 121658293 + 121658273 121658313 41 ACAATATGCCCTGGTTACAGCTGGGGAGGTCATGTTCTCTG ACAATATGCCCTGGTTACAGCCGGGGAGGTCATGTTCTCTG < 41bp 0.804241495131464 0.592128245063105 0.2661239 0.86161643 prediction 0.424226500136718 Functional Loss - SLC15A2 ENSG00000163406 CDS Human protein_coding chr3:121658293 chr3:121658294 synonymous SNV . 0 22 hm5C_associated_SNPs_87970 0 0 0 0 2 SLC15A2 chr3:121658196 3'AG 121658196 Downstream 99bp
chr3 121658294 121658294 1 + T C LUAD 121658293 + 121658273 121658313 41 ACAATATGCCCTGGTTACAGCTGGGGAGGTCATGTTCTCTG ACAATATGCCCTGGTTACAGCCGGGGAGGTCATGTTCTCTG < 41bp 0.804241495131464 0.592128245063105 0.2661239 0.86161643 prediction 0.424226500136718 Functional Loss - SLC15A2 ENSG00000163406 CDS Human protein_coding chr3:121658293 chr3:121658294 synonymous SNV . 0 22 hm5C_associated_SNPs_87970 0 0 0 0 2 SLC15A2 chr3:121658342 5'GT 121658342 Upstream 49bp
chr15 75094126 75094126 1 + C T UCEC 75094123 + 75094103 75094143 41 AATGTGCTGGTGTCTGAGGACAACGTGGCCAAGGTCAGCGA AATGTGCTGGTGTCTGAGGACAATGTGGCCAAGGTCAGCGA < 41bp 0.712110199029291 0.493168373939142 0.2373805 0.29691905 prediction 0.424220398058583 Functional Loss - CSK ENSG00000103653 CDS Human protein_coding chr15:75094123 chr15:75094126 synonymous SNV . 0 24 hm5C_associated_SNPs_87972 0 0 1 0 1 CSK chr15:75094036 3'AG 75094036 Downstream 91bp
chr17 3385055 3385055 1 + G T UCEC 3385053 + 3385033 3385073 41 ACTCTTATTCTTGAGGATTCCAGGAATAACTTTTTAATTCA ACTCTTATTCTTGAGGATTCCATGAATAACTTTTTAATTCA < 41bp 0.893454021412672 0.681346626590264 0.8758699 0.17492482 prediction 0.424214789644816 Functional Loss - ASPA ENSG00000108381 CDS Human protein_coding chr17:3385053 chr17:3385055 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_87974 0 0 0 0 1 ASPA chr17:3385092 5'GT 3385092 Upstream 38bp
chr10 99343347 99343347 1 + G A UCEC 99343344 + 99343324 99343364 41 CCCCTCCAGGCAGGAAAGACCCCGACGGACCTGGTGCAGCT CCCCTCCAGGCAGGAAAGACCCCAACGGACCTGGTGCAGCT < 41bp 0.796246672736495 0.584146935058945 0.49883682 0.17649335 prediction 0.424199475355101 Functional Loss - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99343344 chr10:99343347 synonymous SNV . 0 24 hm5C_associated_SNPs_87979 0 0 0 0 1 ANKRD2 chr10:99343333 3'AG 99343333 Downstream 15bp
chr14 62229286 62229286 1 + G A HNSC 62229283 + 62229263 62229303 41 TTCACGGAGCTCTGGAGAAACATGAAGTTCGGGACTATCTT TTCACGGAGCTCTGGAGAAACATAAAGTTCGGGACTATCTT < 41bp 0.767033090011545 0.554933722728943 0.7453363 0.78708345 prediction 0.424198734565203 Functional Loss - SNAPC1 ENSG00000023608 CDS Human protein_coding chr14:62229283 chr14:62229286 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_87980 0 0 1 0 1 SNAPC1 chr14:62229306 5'GT 62229306 Upstream 21bp
chr9 96438932 96438932 1 + C T LUAD 96438929 + 96438909 96438949 41 AAGAGGAAGCTGACTCCTAACACCACCTCCCCTTCCACCTC AAGAGGAAGCTGACTCCTAACACTACCTCCCCTTCCACCTC < 41bp 0.712096811471446 0.49886241173225 0.24125814 0.11155397 prediction 0.424193622942892 Functional Loss - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96438929 chr9:96438932 synonymous SNV . 0 24 hm5C_associated_SNPs_87981 0 0 1 0 1 PHF2 chr9:96438876 3'AG 96438876 Downstream 57bp
chr16 28906225 28906225 1 + C T rs138880727 28906223 + 28906203 28906243 41 GAGAAGATGAATGTGTTCAACACGGATGTGAGAAGCCTCTC GAGAAGATGAATGTGTTCAACATGGATGTGAGAAGCCTCTC < 41bp 0.84699414077686 0.634901661186075 0.3244469 0.33927637 prediction 0.424184959181571 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28906223 chr16:28906225 nonsynonymous SNV 0.987 2 23 hm5C_associated_SNPs_87984 1 0 0 0 2 ATP2A1 chr16:28906143 3'AG 28906143 Downstream 83bp
chr16 28906225 28906225 1 + C T rs138880727 28906223 + 28906203 28906243 41 GAGAAGATGAATGTGTTCAACACGGATGTGAGAAGCCTCTC GAGAAGATGAATGTGTTCAACATGGATGTGAGAAGCCTCTC < 41bp 0.84699414077686 0.634901661186075 0.3244469 0.33927637 prediction 0.424184959181571 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28906223 chr16:28906225 nonsynonymous SNV 0.987 2 23 hm5C_associated_SNPs_87984 1 0 0 0 2 ATP2A1 chr16:28906274 5'GT 28906274 Upstream 50bp
chr2 36744629 36744629 1 + C T UCEC 36744626 + 36744606 36744646 41 GTGTGAGACAGAGGTGTGCCCACCGCTGCTCTGCCAGAACC GTGTGAGACAGAGGTGTGCCCACTGCTGCTCTGCCAGAACC < 41bp 0.744790413038618 0.532700509675519 0.19018856 0.21829268 prediction 0.424179806726198 Functional Loss - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36744626 chr2:36744629 nonsynonymous SNV 0.981 4 24 hm5C_associated_SNPs_87985 0 0 1 0 1 CRIM1 chr2:36744685 5'GT 36744685 Upstream 57bp
chr1 50610820 50610820 1 + G A SKCM 50610817 + 50610797 50610837 41 GAAGAATTCAGGAGTCTCTTCGGGAGCATTGGTGAAATAGA GAAGAATTCAGGAGTCTCTTCGGAAGCATTGGTGAAATAGA < 41bp 0.767318743612514 0.555231347557738 0.9277028 0.8995598 prediction 0.424174792109553 Functional Loss - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50610817 chr1:50610820 synonymous SNV . 0 24 hm5C_associated_SNPs_87986 0 0 0 0 1 ELAVL4 chr1:50610869 5'GT 50610869 Upstream 50bp
chr15 38643282 38643282 1 + G A CESC 38643279 + 38643259 38643299 41 TGAGATTGTCAGAATAAACCCTCGAGATATCTTAATACGTC TGAGATTGTCAGAATAAACCCTCAAGATATCTTAATACGTC < 41bp 0.71222040650642 0.500133209021109 0.42373183 0.030289829 prediction 0.424174394970622 Functional Loss - SPRED1 ENSG00000166068 CDS Human protein_coding chr15:38643279 chr15:38643282 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_87987 0 0 1 0 1 SPRED1 chr15:38643215 3'AG 38643215 Downstream 68bp
chr12 6943117 6943117 1 + G A LUSC 6943114 + 6943094 6943134 41 CTTCTCCTGGAGGGTGTGACCTTGACCCAGGATTCCAGGCA CTTCTCCTGGAGGGTGTGACCTTAACCCAGGATTCCAGGCA < 41bp 0.712084813894901 0.464695042143117 0.6935305 0.32522947 prediction 0.424169627789801 Functional Loss - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6943114 chr12:6943117 synonymous SNV . 0 24 hm5C_associated_SNPs_87988 0 0 1 0 2 P3H3 chr12:6943089 3'AG 6943089 Downstream 29bp
chr12 6943117 6943117 1 + G A LUSC 6943114 + 6943094 6943134 41 CTTCTCCTGGAGGGTGTGACCTTGACCCAGGATTCCAGGCA CTTCTCCTGGAGGGTGTGACCTTAACCCAGGATTCCAGGCA < 41bp 0.712084813894901 0.464695042143117 0.6935305 0.32522947 prediction 0.424169627789801 Functional Loss - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6943114 chr12:6943117 synonymous SNV . 0 24 hm5C_associated_SNPs_87988 0 0 1 0 2 P3H3 chr12:6943213 5'GT 6943213 Upstream 97bp
chr7 72743375 72743375 1 + G A SKCM 72743372 + 72743352 72743392 41 TTCTATCCTAGTGAAATACTCGGGATACCTGGAACACATGG TTCTATCCTAGTGAAATACTCGGAATACCTGGAACACATGG < 41bp 0.712083994420989 0.483868148351728 0.9465147 0.92376053 prediction 0.424167988841978 Functional Loss - FKBP6 ENSG00000077800 CDS Human protein_coding chr7:72743372 chr7:72743375 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_87989 0 0 0 2 1 FKBP6 chr7:72743363 3'AG 72743363 Downstream 13bp
chr8 75927109 75927109 1 + G A LUSC 75927106 + 75927086 75927126 41 GCCCTGTTCTGCTTGCCCACCTAGTTTTGGAGGGGGCTGTA GCCCTGTTCTGCTTGCCCACCTAATTTTGGAGGGGGCTGTA < 41bp 0.712083908987291 0.468377957882687 0.291232 0.29548645 prediction 0.424167817974581 Functional Loss - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75927106 chr8:75927109 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_87990 0 0 0 0 2 CRISPLD1 chr8:75927047 3'AG 75927047 Downstream 63bp
chr8 75927109 75927109 1 + G A LUSC 75927106 + 75927086 75927126 41 GCCCTGTTCTGCTTGCCCACCTAGTTTTGGAGGGGGCTGTA GCCCTGTTCTGCTTGCCCACCTAATTTTGGAGGGGGCTGTA < 41bp 0.712083908987291 0.468377957882687 0.291232 0.29548645 prediction 0.424167817974581 Functional Loss - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75927106 chr8:75927109 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_87990 0 0 0 0 2 CRISPLD1 chr8:75927147 5'GT 75927147 Upstream 39bp
chr7 63709511 63709511 1 + G T LUSC 63709509 + 63709489 63709529 41 CAGATTTATGGCTAAAAGACCGGGATCCCCTGGAAGCCGAG CAGATTTATGGCTAAAAGACCGTGATCCCCTGGAAGCCGAG < 41bp 0.908155437309383 0.696072643766939 0.8549274 0.14162111 prediction 0.424165587084887 Functional Loss - ZNF679 ENSG00000197123 CDS Human protein_coding chr7:63709509 chr7:63709511 stopgain 0.000 0 23 hm5C_associated_SNPs_87991 0 0 0 0 1 ZNF679 chr7:63709534 5'GT 63709534 Upstream 24bp
chr2 173883493 173883493 1 + G A rs369238861 173883490 + 173883470 173883510 41 GTTGCCGACAAGCTGGGCTCCGGGGAGGGCCTGATCATAGT GTTGCCGACAAGCTGGGCTCCGGAGAGGGCCTGATCATAGT < 41bp 0.758290357467086 0.546211809040653 0.8196367 0.66425216 prediction 0.424157096852866 Functional Loss - RAPGEF4 ENSG00000091428 CDS Human protein_coding chr2:173883490 chr2:173883493 synonymous SNV . 0 24 hm5C_associated_SNPs_87995 0 0 0 0 1 RAPGEF4 chr2:173883530 5'GT 173883530 Upstream 38bp
chr14 93142887 93142887 1 + G A rs56208303 93142884 + 93142864 93142904 41 GTGCTGGCCCGCAGCAACCTCACGGAGATGCTTCTCAATGT GTGCTGGCCCGCAGCAACCTCACAGAGATGCTTCTCAATGT < 41bp 0.712078135316871 0.459955653388043 0.28493744 0.14182311 prediction 0.424156270633743 Functional Loss - RIN3 ENSG00000100599 CDS Human protein_coding chr14:93142884 chr14:93142887 synonymous SNV . 0 24 hm5C_associated_SNPs_87996 0 0 0 0 1 RIN3 chr14:93142820 3'AG 93142820 Downstream 68bp
chr11 65618601 65618601 1 + C T STAD 65618598 + 65618578 65618618 41 CCCGTATCCGAGATGCCTGCCTGCGGGCCGACCGCGTCATG CCCGTATCCGAGATGCCTGCCTGTGGGCCGACCGCGTCATG < 41bp 0.734445539976681 0.522368255560005 0.19533715 0.12068501 prediction 0.424154568833353 Functional Loss - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65618598 chr11:65618601 nonsynonymous SNV 0.943 0 24 hm5C_associated_SNPs_87998 0 0 0 0 1 SNX32 chr11:65618526 3'AG 65618526 Downstream 76bp
chr9 17793390 17793390 1 + A T HNSC 17793388 + 17793368 17793408 41 AAGACAGGCTTCATCTCAGCCTAGAAGGGAATATCAACCTA AAGACAGGCTTCATCTCAGCCTTGAAGGGAATATCAACCTA < 41bp 0.716463672820171 0.504387687605928 0.04191497 0.009563237 prediction 0.424151970428486 Functional Loss - SH3GL2 ENSG00000107295 CDS Human protein_coding chr9:17793388 chr9:17793390 stopgain 1.000 0 23 hm5C_associated_SNPs_87999 0 0 1 0 1 SH3GL2 chr9:17793365 3'AG 17793365 Downstream 26bp
chr1 238045785 238045785 1 + G T LUAD 238045782 + 238045762 238045802 41 ACAGCCAAGTAGGATACTAACAAGGCTCCAAGGATTAAGGT ACAGCCAAGTAGGATACTAACAATGCTCCAAGGATTAAGGT < 41bp 0.712075847668273 0.317381634102917 0.39817527 0.05452302 prediction 0.424151695336546 Functional Loss - ZP4 ENSG00000116996 CDS Human protein_coding chr1:238045782 chr1:238045785 synonymous SNV . 0 24 hm5C_associated_SNPs_88000 0 0 0 0 2 ZP4 chr1:238045766 3'AG 238045766 Downstream 20bp
chr1 238045785 238045785 1 + G T LUAD 238045782 + 238045762 238045802 41 ACAGCCAAGTAGGATACTAACAAGGCTCCAAGGATTAAGGT ACAGCCAAGTAGGATACTAACAATGCTCCAAGGATTAAGGT < 41bp 0.712075847668273 0.317381634102917 0.39817527 0.05452302 prediction 0.424151695336546 Functional Loss - ZP4 ENSG00000116996 CDS Human antisense chr1:238045782 chr1:238045785 synonymous SNV . 0 24 hm5C_associated_SNPs_88000 0 0 0 0 2 LOC100130331 chr1:238045868 5'GT 238045868 Upstream 84bp
chr6 84563822 84563822 1 + G A BLCA 84563819 + 84563799 84563839 41 CTTCCTTTCCTCTCCAGATGCCCGATGGCCCTGGAATGACC CTTCCTTTCCTCTCCAGATGCCCAATGGCCCTGGAATGACC < 41bp 0.712075788755663 0.465254101784975 0.30284512 0.377287 prediction 0.424151577511326 Functional Loss - RIPPLY2 ENSG00000203877 CDS Human protein_coding chr6:84563819 chr6:84563822 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_88001 0 0 0 0 2 RIPPLY2 chr6:84563816 3'AG 84563816 Downstream 7bp
chr6 84563822 84563822 1 + G A BLCA 84563819 + 84563799 84563839 41 CTTCCTTTCCTCTCCAGATGCCCGATGGCCCTGGAATGACC CTTCCTTTCCTCTCCAGATGCCCAATGGCCCTGGAATGACC < 41bp 0.712075788755663 0.465254101784975 0.30284512 0.377287 prediction 0.424151577511326 Functional Loss - RIPPLY2 ENSG00000203877 CDS Human protein_coding chr6:84563819 chr6:84563822 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_88001 0 0 0 0 2 RIPPLY2 chr6:84563880 5'GT 84563880 Upstream 59bp
chr6 84563821 84563821 1 + C T STAD 84563819 + 84563799 84563839 41 CTTCCTTTCCTCTCCAGATGCCCGATGGCCCTGGAATGACC CTTCCTTTCCTCTCCAGATGCCTGATGGCCCTGGAATGACC < 41bp 0.712075788755663 0.429840328768998 0.30284512 0.2145277 prediction 0.424151577511326 Functional Loss - RIPPLY2 ENSG00000203877 CDS Human protein_coding chr6:84563819 chr6:84563821 synonymous SNV . 0 23 hm5C_associated_SNPs_88002 0 0 0 0 2 RIPPLY2 chr6:84563816 3'AG 84563816 Downstream 6bp
chr6 84563821 84563821 1 + C T STAD 84563819 + 84563799 84563839 41 CTTCCTTTCCTCTCCAGATGCCCGATGGCCCTGGAATGACC CTTCCTTTCCTCTCCAGATGCCTGATGGCCCTGGAATGACC < 41bp 0.712075788755663 0.429840328768998 0.30284512 0.2145277 prediction 0.424151577511326 Functional Loss - RIPPLY2 ENSG00000203877 CDS Human protein_coding chr6:84563819 chr6:84563821 synonymous SNV . 0 23 hm5C_associated_SNPs_88002 0 0 0 0 2 RIPPLY2 chr6:84563880 5'GT 84563880 Upstream 60bp
chr14 21465017 21465017 1 + C T SKCM 21465015 + 21464995 21465035 41 GCTTACTCCGTCTGCGTTTCCTCCATCTACGGCTCAGGATC GCTTACTCCGTCTGCGTTTCCTTCATCTACGGCTCAGGATC < 41bp 0.860427691382506 0.648352930575832 0.956293 0.09532228 prediction 0.424149521613347 Functional Loss - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21465015 chr14:21465017 nonsynonymous SNV 0.017 1 23 hm5C_associated_SNPs_88004 0 0 1 0 2 METTL17 chr14:21464944 3'AG 21464944 Downstream 74bp
chr14 21465017 21465017 1 + C T SKCM 21465015 + 21464995 21465035 41 GCTTACTCCGTCTGCGTTTCCTCCATCTACGGCTCAGGATC GCTTACTCCGTCTGCGTTTCCTTCATCTACGGCTCAGGATC < 41bp 0.860427691382506 0.648352930575832 0.956293 0.09532228 prediction 0.424149521613347 Functional Loss - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21465015 chr14:21465017 nonsynonymous SNV 0.017 1 23 hm5C_associated_SNPs_88004 0 0 1 0 2 METTL17 chr14:21464971 3'AG 21464971 Downstream 47bp
chr7 127292443 127292443 1 + C T UCEC 127292441 + 127292421 127292461 41 TCCACACATGGCGTCCTCCGCGCAGAGCGGCGGCTCCTCCG TCCACACATGGCGTCCTCCGCGTAGAGCGGCGGCTCCTCCG < 41bp 0.764875920074064 0.552802351043024 0.42198932 0.3190243 prediction 0.424147138062081 Functional Loss - SND1 ENSG00000197157 CDS Human protein_coding chr7:127292441 chr7:127292443 stopgain 1.000 0 23 hm5C_associated_SNPs_88005 0 0 1 0 1 SND1 chr7:127292505 5'GT 127292505 Upstream 63bp
chr15 81584983 81584983 1 + G T LUAD 81584979 + 81584959 81584999 41 AACTCAGCACCCCCGCATCGCAGGGCTCAGAAGGTCATGAT AACTCAGCACCCCCGCATCGCAGGTCTCAGAAGGTCATGAT < 41bp 0.73752223294236 0.525450033263347 0.9082296 0.52177787 prediction 0.424144399358025 Functional Loss - IL16 ENSG00000172349 CDS Human protein_coding chr15:81584979 chr15:81584983 nonsynonymous SNV 0.936 0 25 hm5C_associated_SNPs_88008 0 0 0 0 1 IL16 chr15:81584897 3'AG 81584897 Downstream 87bp
chr17 41165103 41165103 1 + G T COAD 41165099 + 41165079 41165119 41 CCCAAGATCCCCCTGGTATTCCGAGGACACACCCAGCAGGA CCCAAGATCCCCCTGGTATTCCGATGACACACCCAGCAGGA < 41bp 0.716148926627172 0.504077917893663 0.84115195 0.4838809 prediction 0.424142017467019 Functional Loss - IFI35 ENSG00000068079 CDS Human protein_coding chr17:41165099 chr17:41165103 stopgain 0.679 0 25 hm5C_associated_SNPs_88010 0 0 1 0 1 IFI35 chr17:41165064 3'AG 41165064 Downstream 40bp
chr3 9952668 9952668 1 + G A rs61743385 9952665 + 9952645 9952685 41 AAGCTGCCCTCTGCCAGAGGCACGACTGGCATACCCTTTGC AAGCTGCCCTCTGCCAGAGGCACAACTGGCATACCCTTTGC < 41bp 0.80370328708191 0.591633969450425 0.09665024 0.03694451 prediction 0.42413863526297 Functional Loss - IL17RE ENSG00000163701 CDS Human protein_coding chr3:9952665 chr3:9952668 nonsynonymous SNV 0.012 0 24 hm5C_associated_SNPs_88011 0 0 1 1 1 IL17RE chr3:9952724 5'GT 9952724 Upstream 57bp
chr10 86008690 86008690 1 + C T STAD 86008687 + 86008667 86008707 41 GTCTCCCACAGGCGCTGGCCCTACGGCTCGGACGGCTGCCA GTCTCCCACAGGCGCTGGCCCTATGGCTCGGACGGCTGCCA < 41bp 0.712189509737313 0.50012094674539 0.29699793 0.4128674 prediction 0.424137125983846 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86008687 chr10:86008690 nonsynonymous SNV 0.902 1 24 hm5C_associated_SNPs_88012 0 0 0 0 1 RGR chr10:86008678 3'AG 86008678 Downstream 13bp
chrX 48399742 48399742 1 + C T STAD 48399740 + 48399720 48399760 41 GAAATGTGAGAGCTTCTTGCCGCCAGAGTTCCGCTCTTTTG GAAATGTGAGAGCTTCTTGCCGTCAGAGTTCCGCTCTTTTG < 41bp 0.725408990417578 0.513341219647871 0.8947871 0.3573137 prediction 0.424135541539413 Functional Loss - TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399740 chrX:48399742 nonsynonymous SNV 0.875 0 23 hm5C_associated_SNPs_88013 0 0 1 0 2 TBC1D25 chrX:48399721 3'AG 48399721 Downstream 22bp
chrX 48399742 48399742 1 + C T STAD 48399740 + 48399720 48399760 41 GAAATGTGAGAGCTTCTTGCCGCCAGAGTTCCGCTCTTTTG GAAATGTGAGAGCTTCTTGCCGTCAGAGTTCCGCTCTTTTG < 41bp 0.725408990417578 0.513341219647871 0.8947871 0.3573137 prediction 0.424135541539413 Functional Loss - TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399740 chrX:48399742 nonsynonymous SNV 0.875 0 23 hm5C_associated_SNPs_88013 0 0 1 0 2 TBC1D25 chrX:48399830 5'GT 48399830 Upstream 89bp
chr19 42399472 42399472 1 + C T BLCA 42399470 + 42399450 42399490 41 GGGAGGCGTGGGGATGCCCTCTCGGGACCGGAATATCGGGG GGGAGGCGTGGGGATGCCCTCTTGGGACCGGAATATCGGGG < 41bp 0.823350671263911 0.611286353446867 0.07154539 0.051269144 prediction 0.424128635634087 Functional Loss - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42399470 chr19:42399472 nonsynonymous SNV 0.948 3 23 hm5C_associated_SNPs_88018 0 0 1 0 1 ARHGEF1 chr19:42399559 5'GT 42399559 Upstream 88bp
chr22 46669807 46669807 1 + C T UCEC 46669805 + 46669785 46669825 41 CTCCCACCAGTGATGGGCCACGCCATGGCTACTGGCCTTGT CTCCCACCAGTGATGGGCCACGTCATGGCTACTGGCCTTGT < 41bp 0.712058906470807 0.418674421842637 0.13406613 0.12656367 prediction 0.424117812941614 Functional Loss - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46669805 chr22:46669807 nonsynonymous SNV 0.078 1 23 hm5C_associated_SNPs_88023 0 0 1 0 1 TTC38 chr22:46669795 3'AG 46669795 Downstream 13bp
chr19 501749 501749 1 + G A STAD 501746 + 501726 501766 41 ACACCACCTCCCCGGAGTCTCCCGACACCACCTCCCAGGAG ACACCACCTCCCCGGAGTCTCCCAACACCACCTCCCAGGAG < 41bp 0.8200639565017 0.608005768383861 0.13074246 0.115688086 prediction 0.424116376235679 Functional Loss - MADCAM1 ENSG00000099866 CDS Human protein_coding chr19:501746 chr19:501749 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_88025 0 0 0 0 1 MADCAM1 chr19:501669 3'AG 501669 Downstream 81bp
chr7 34889232 34889232 1 + G A CESC 34889229 + 34889209 34889249 41 TCCGGGAGAGAACTGAGAGGCATGAGATGCAGATTCTGTCC TCCGGGAGAGAACTGAGAGGCATAAGATGCAGATTCTGTCC < 41bp 0.772150452918529 0.560092559526628 0.43273532 0.2742405 prediction 0.424115786783802 Functional Loss - NPSR1 ENSG00000187258 CDS Human protein_coding chr7:34889229 chr7:34889232 nonsynonymous SNV 0.703 0 24 hm5C_associated_SNPs_88026 0 0 0 0 1 NPSR1 chr7:34889177 3'AG 34889177 Downstream 56bp
chr16 5037566 5037566 1 + G A UCEC 5037563 + 5037543 5037583 41 CCGCTCTGCCCCCAGGCCTACGAGAAGCGTTTCCCCACGTG CCGCTCTGCCCCCAGGCCTACGAAAAGCGTTTCCCCACGTG < 41bp 0.816017611030953 0.603960166191847 0.82657707 0.28084263 prediction 0.424114889678214 Functional Loss - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5037563 chr16:5037566 synonymous SNV . 0 24 hm5C_associated_SNPs_88027 0 0 0 0 1 SEC14L5 chr16:5037558 3'AG 5037558 Downstream 9bp
chr18 19780715 19780715 1 + A T LUAD 19780711 + 19780691 19780731 41 CAAGATGGGCTCTACATAGGCGTCAGTCTCGCCTCGCCGGC CAAGATGGGCTCTACATAGGCGTCTGTCTCGCCTCGCCGGC < 41bp 0.712052149244277 0.387389249131154 0.4100903 0.6879232 prediction 0.424104298488553 Functional Loss - GATA6 ENSG00000141448 CDS Human protein_coding chr18:19780711 chr18:19780715 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_88029 0 0 1 0 1 GATA6 chr18:19780619 3'AG 19780619 Downstream 97bp
chr8 133844552 133844552 1 + G T LUAD 133844549 + 133844529 133844569 41 TTCTCCACTAACTCGATCTTCTGGGAGTTCTCTGGCTTCAC TTCTCCACTAACTCGATCTTCTGTGAGTTCTCTGGCTTCAC < 41bp 0.712050444734387 0.322635455325423 0.89648485 0.40755025 prediction 0.424100889468774 Functional Loss - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133844549 chr8:133844552 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_88030 0 0 1 0 2 PHF20L1 chr8:133844480 3'AG 133844480 Downstream 73bp
chr8 133844552 133844552 1 + G T LUAD 133844549 + 133844529 133844569 41 TTCTCCACTAACTCGATCTTCTGGGAGTTCTCTGGCTTCAC TTCTCCACTAACTCGATCTTCTGTGAGTTCTCTGGCTTCAC < 41bp 0.712050444734387 0.322635455325423 0.89648485 0.40755025 prediction 0.424100889468774 Functional Loss - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133844549 chr8:133844552 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_88030 0 0 1 0 2 PHF20L1 chr8:133844644 5'GT 133844644 Upstream 93bp
chr8 133844551 133844551 1 + G T LUAD 133844549 + 133844529 133844569 41 TTCTCCACTAACTCGATCTTCTGGGAGTTCTCTGGCTTCAC TTCTCCACTAACTCGATCTTCTTGGAGTTCTCTGGCTTCAC < 41bp 0.712050444734387 0.37440748867299 0.89648485 0.32473937 prediction 0.424100889468774 Functional Loss - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133844549 chr8:133844551 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_88031 0 0 1 0 2 PHF20L1 chr8:133844480 3'AG 133844480 Downstream 72bp
chr8 133844551 133844551 1 + G T LUAD 133844549 + 133844529 133844569 41 TTCTCCACTAACTCGATCTTCTGGGAGTTCTCTGGCTTCAC TTCTCCACTAACTCGATCTTCTTGGAGTTCTCTGGCTTCAC < 41bp 0.712050444734387 0.37440748867299 0.89648485 0.32473937 prediction 0.424100889468774 Functional Loss - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133844549 chr8:133844551 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_88031 0 0 1 0 2 PHF20L1 chr8:133844644 5'GT 133844644 Upstream 94bp
chr5 126746147 126746147 1 + C T rs35550094 126746144 + 126746124 126746164 41 GCTGAGACCTGCCAGTGTGTCAACGGAGGGAAGTGTTACCA GCTGAGACCTGCCAGTGTGTCAATGGAGGGAAGTGTTACCA < 41bp 0.740958811307503 0.528908525668337 0.8027745 0.35640067 prediction 0.424100571278331 Functional Loss - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126746144 chr5:126746147 synonymous SNV . 0 24 hm5C_associated_SNPs_88032 1 0 0 0 1 MEGF10 chr5:126746081 3'AG 126746081 Downstream 67bp
chr12 130855797 130855797 1 + A C SKCM 130855796 + 130855776 130855816 41 CATTACAATGTCATCTATGACAACAGCGGCCTGAAGCCAGA CATTACAATGTCATCTATGACCACAGCGGCCTGAAGCCAGA < 41bp 0.712048553850215 0.448265799252558 0.18433252 0.18819395 prediction 0.42409710770043 Functional Loss - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130855796 chr12:130855797 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_88034 0 0 0 0 2 PIWIL1 chr12:130855721 3'AG 130855721 Downstream 77bp
chr12 130855797 130855797 1 + A C SKCM 130855796 + 130855776 130855816 41 CATTACAATGTCATCTATGACAACAGCGGCCTGAAGCCAGA CATTACAATGTCATCTATGACCACAGCGGCCTGAAGCCAGA < 41bp 0.712048553850215 0.448265799252558 0.18433252 0.18819395 prediction 0.42409710770043 Functional Loss - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130855796 chr12:130855797 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_88034 0 0 0 0 2 PIWIL1 chr12:130855868 5'GT 130855868 Upstream 72bp
chr11 11906050 11906050 1 + G A rs34511735 11906047 + 11906027 11906067 41 ATACCAGTGACAAGTCACTTCTCGACGCTAATTTTGAGCCA ATACCAGTGACAAGTCACTTCTCAACGCTAATTTTGAGCCA < 41bp 0.771110137817805 0.559061901264816 0.3774643 0.1564768 prediction 0.424096473105978 Functional Loss - USP47 ENSG00000170242 CDS Human protein_coding chr11:11906047 chr11:11906050 nonsynonymous SNV 0.986 1 24 hm5C_associated_SNPs_88035 0 0 1 0 2 USP47 chr11:11906014 3'AG 11906014 Downstream 37bp
chr11 11906050 11906050 1 + G A rs34511735 11906047 + 11906027 11906067 41 ATACCAGTGACAAGTCACTTCTCGACGCTAATTTTGAGCCA ATACCAGTGACAAGTCACTTCTCAACGCTAATTTTGAGCCA < 41bp 0.771110137817805 0.559061901264816 0.3774643 0.1564768 prediction 0.424096473105978 Functional Loss - USP47 ENSG00000170242 CDS Human protein_coding chr11:11906047 chr11:11906050 nonsynonymous SNV 0.986 1 24 hm5C_associated_SNPs_88035 0 0 1 0 2 USP47 chr11:11906127 5'GT 11906127 Upstream 78bp
chr1 46877317 46877317 1 + G T HNSC 46877314 + 46877294 46877334 41 AAACTCTGGGAACTGCAGCACGAGATCGAGGTGAGGCCAGA AAACTCTGGGAACTGCAGCACGATATCGAGGTGAGGCCAGA < 41bp 0.712041995059252 0.31676116159898 0.3393079 0.091763735 prediction 0.424083990118503 Functional Loss - FAAH ENSG00000117480 CDS Human protein_coding chr1:46877314 chr1:46877317 nonsynonymous SNV 0.938 0 24 hm5C_associated_SNPs_88038 0 0 1 0 2 FAAH chr1:46877284 3'AG 46877284 Downstream 34bp
chr1 46877317 46877317 1 + G T HNSC 46877314 + 46877294 46877334 41 AAACTCTGGGAACTGCAGCACGAGATCGAGGTGAGGCCAGA AAACTCTGGGAACTGCAGCACGATATCGAGGTGAGGCCAGA < 41bp 0.712041995059252 0.31676116159898 0.3393079 0.091763735 prediction 0.424083990118503 Functional Loss - FAAH ENSG00000117480 CDS Human protein_coding chr1:46877314 chr1:46877317 nonsynonymous SNV 0.938 0 24 hm5C_associated_SNPs_88038 0 0 1 0 2 FAAH chr1:46877323 5'GT 46877323 Upstream 7bp
chr2 46808718 46808718 1 - A G COAD 46808719 - 46808699 46808739 41 TCTCCTCAGGTATGGCCCATCTCCTGTACGCTTGGAGCGAC TCTCCTCAGGTATGGCCCATCCCCTGTACGCTTGGAGCGAC < 41bp 0.830275317706793 0.618234288564212 0.34055585 0.13527945 prediction 0.424082058285162 Functional Loss - PIGF ENSG00000151665 CDS Human protein_coding chr2:46808719 chr2:46808718 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_88039 0 0 0 2 1 PIGF chr2:46808730 3'AG 46808730 Downstream 13bp
chr8 36663823 36663823 1 + G A SKCM 36663820 + 36663800 36663840 41 ATGACAAGATCAAGTTCTGGCTGGAGATGAATTCAATCGTA ATGACAAGATCAAGTTCTGGCTGAAGATGAATTCAATCGTA < 41bp 0.777469213395153 0.56543336039764 0.25126082 0.11902717 prediction 0.424071705995027 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36663820 chr8:36663823 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_88042 0 0 0 0 2 KCNU1 chr8:36663787 3'AG 36663787 Downstream 37bp
chr8 36663823 36663823 1 + G A SKCM 36663820 + 36663800 36663840 41 ATGACAAGATCAAGTTCTGGCTGGAGATGAATTCAATCGTA ATGACAAGATCAAGTTCTGGCTGAAGATGAATTCAATCGTA < 41bp 0.777469213395153 0.56543336039764 0.25126082 0.11902717 prediction 0.424071705995027 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36663820 chr8:36663823 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_88042 0 0 0 0 2 KCNU1 chr8:36663898 5'GT 36663898 Upstream 76bp
chr19 42396873 42396873 1 + G A UCEC 42396870 + 42396850 42396890 41 GACCGAGCCAGCTACGAGGCCCGGGAGCGGCACGTGGCGGA GACCGAGCCAGCTACGAGGCCCGAGAGCGGCACGTGGCGGA < 41bp 0.712032802138588 0.471964607008427 0.6291718 0.26450938 prediction 0.424065604277176 Functional Loss - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42396870 chr19:42396873 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_88047 0 0 1 0 1 ARHGEF1 chr19:42396920 5'GT 42396920 Upstream 48bp
chrX 12928544 12928544 1 + G A UCEC 12928541 + 12928521 12928561 41 TGCAAAATAGCTCCTGCAGCCTGGGAAAGGAGACTAAAAAG TGCAAAATAGCTCCTGCAGCCTGAGAAAGGAGACTAAAAAG < 41bp 0.76430430225441 0.552273639614118 0.38434547 0.17186534 prediction 0.424061325280585 Functional Loss - TLR8 ENSG00000101916 CDS Human protein_coding chrX:12928541 chrX:12928544 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_88051 0 0 0 0 1 TLR8 chrX:12928561 5'GT 12928561 Upstream 18bp
chr3 40085725 40085725 1 + G A COAD 40085722 + 40085702 40085742 41 GCTGCTGCTCCTACCAGAAGCACGAAAAGGCCTGGGTCTGC GCTGCTGCTCCTACCAGAAGCACAAAAAGGCCTGGGTCTGC < 41bp 0.772233734930392 0.560207488261195 0.19410804 0.18320149 prediction 0.424052493338394 Functional Loss - MYRIP ENSG00000170011 CDS Human protein_coding chr3:40085722 chr3:40085725 nonsynonymous SNV 0.872 4 24 hm5C_associated_SNPs_88052 0 0 0 0 1 MYRIP chr3:40085762 5'GT 40085762 Upstream 38bp
chr12 117448145 117448145 1 + G T LUSC 117448143 + 117448123 117448163 41 CTCAGATCCTGGTGTATAGCCTGGAAGCAGGACGCCGCCTC CTCAGATCCTGGTGTATAGCCTTGAAGCAGGACGCCGCCTC < 41bp 0.913355533525328 0.701329752364374 0.35902452 0.14088473 prediction 0.424051562321909 Functional Loss - FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117448143 chr12:117448145 synonymous SNV . 0 23 hm5C_associated_SNPs_88053 0 0 0 0 1 FBXW8 chr12:117448128 3'AG 117448128 Downstream 18bp
chr5 153030000 153030000 1 + G A SKCM 153029997 + 153029977 153030017 41 AGGGATACCGGATGCTCTTTCAGGACCTGGAGAAGAAAAAG AGGGATACCGGATGCTCTTTCAGAACCTGGAGAAGAAAAAG < 41bp 0.779919575460767 0.567893817824411 0.8940627 0.87252545 prediction 0.424051515272711 Functional Loss - GRIA1 ENSG00000155511 CDS Human protein_coding chr5:153029997 chr5:153030000 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_88054 0 0 0 0 1 GRIA1 chr5:153030074 5'GT 153030074 Upstream 75bp
chr3 157920883 157920883 1 + C T SKCM 157920880 + 157920860 157920900 41 GGTCCAGGTCAAGACCTCGTCTCCGTTCTCATAGTCGTAGC GGTCCAGGTCAAGACCTCGTCTCTGTTCTCATAGTCGTAGC < 41bp 0.729821031378943 0.517796923405591 0.22033417 0.039004117 prediction 0.424048215946704 Functional Loss - RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157920880 chr3:157920883 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_88055 0 0 1 0 1 RSRC1 chr3:157920861 3'AG 157920861 Downstream 23bp
chr1 43665125 43665125 1 + C T LUSC 43665123 + 43665103 43665143 41 GGAAATGTGATTCACGTTTACACCACCACGAGCCTAGAGAA GGAAATGTGATTCACGTTTACATCACCACGAGCCTAGAGAA < 41bp 0.712022218562733 0.406689844865529 0.018546432 0.010995775 prediction 0.424044437125466 Functional Loss - CFAP57 ENSG00000243710 CDS Human protein_coding chr1:43665123 chr1:43665125 nonsynonymous SNV 0.946 1 23 hm5C_associated_SNPs_88057 0 0 0 0 1 CFAP57 chr1:43665174 5'GT 43665174 Upstream 50bp
chr22 39385576 39385576 1 + G A rs142896028 39385573 + 39385553 39385593 41 GAGCGCCTGGACAATGGCACCTGGGTCCTGATGGACCAGCA GAGCGCCTGGACAATGGCACCTGAGTCCTGATGGACCAGCA < 41bp 0.787459312916177 0.575437924971562 0.5782431 0.46624225 prediction 0.424042775889229 Functional Loss - APOBEC3B ENSG00000179750 CDS Human protein_coding chr22:39385573 chr22:39385576 stopgain 0.030 0 24 hm5C_associated_SNPs_88058 0 0 1 0 1 APOBEC3B chr22:39385615 5'GT 39385615 Upstream 40bp
chr6 32714117 32714117 1 + C T SKCM 32714114 + 32714094 32714134 41 GGCATTGTGGTGGGCACTGTCTTCATCATCCAAGGCCTGCG GGCATTGTGGTGGGCACTGTCTTTATCATCCAAGGCCTGCG < 41bp 0.712017657781874 0.487435294793084 0.05322048 0.027179033 prediction 0.424035315563748 Functional Loss - HLA-DQA2 ENSG00000237541 CDS Human protein_coding chr6:32714114 chr6:32714117 synonymous SNV . 0 24 hm5C_associated_SNPs_88061 0 0 0 0 1 HLA-DQA2 chr6:32714191 5'GT 32714191 Upstream 75bp
chr16 3526273 3526273 1 + C T COAD 3526270 + 3526250 3526290 41 GCGCGCTCAGCGAGGTCAGCCTGCGCCTCCTCTGCCACGAT GCGCGCTCAGCGAGGTCAGCCTGTGCCTCCTCTGCCACGAT < 41bp 0.721671389920327 0.50965464858419 0.13212982 0.123271465 prediction 0.424033482672275 Functional Loss - NAA60 ENSG00000122390;ENSG00000262621 CDS Human protein_coding chr16:3526270 chr16:3526273 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_88062 0 0 1 0 2 NAA60 chr16:3526222 3'AG 3526222 Downstream 52bp
chr16 3526273 3526273 1 + C T COAD 3526270 + 3526250 3526290 41 GCGCGCTCAGCGAGGTCAGCCTGCGCCTCCTCTGCCACGAT GCGCGCTCAGCGAGGTCAGCCTGTGCCTCCTCTGCCACGAT < 41bp 0.721671389920327 0.50965464858419 0.13212982 0.123271465 prediction 0.424033482672275 Functional Loss - NAA60 ENSG00000122390;ENSG00000262621 CDS Human other chr16:3526270 chr16:3526273 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_88062 0 0 1 0 2 NAA60 chr16:3526337 5'GT 3526337 Upstream 65bp
chr20 37617553 37617553 1 + G T LGG 37617550 + 37617530 37617570 41 CTGCACCGACCAGCTGGCCACGAGAATTAAGGTAAAGTGCT CTGCACCGACCAGCTGGCCACGATAATTAAGGTAAAGTGCT < 41bp 0.712016480126965 0.435030399153487 0.28160965 0.016201228 prediction 0.424032960253929 Functional Loss - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37617550 chr20:37617553 nonsynonymous SNV 0.750 2 24 hm5C_associated_SNPs_88063 0 0 1 0 2 DHX35 chr20:37617456 3'AG 37617456 Downstream 98bp
chr20 37617553 37617553 1 + G T LGG 37617550 + 37617530 37617570 41 CTGCACCGACCAGCTGGCCACGAGAATTAAGGTAAAGTGCT CTGCACCGACCAGCTGGCCACGATAATTAAGGTAAAGTGCT < 41bp 0.712016480126965 0.435030399153487 0.28160965 0.016201228 prediction 0.424032960253929 Functional Loss - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37617550 chr20:37617553 nonsynonymous SNV 0.750 2 24 hm5C_associated_SNPs_88063 0 0 1 0 2 DHX35 chr20:37617560 5'GT 37617560 Upstream 8bp
chr17 63173912 63173912 1 + G T COAD 63173909 + 63173889 63173929 41 GTGACCAATCCGAATGAAGTCAAGGTAAACCAGGTATGTCT GTGACCAATCCGAATGAAGTCAATGTAAACCAGGTATGTCT < 41bp 0.712011125084868 0.316528623341664 0.44168112 0.095446855 prediction 0.424022250169736 Functional Loss - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63173909 chr17:63173912 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_88064 0 0 0 0 3 RGS9 chr17:63173850 3'AG 63173850 Downstream 63bp
chr17 63173912 63173912 1 + G T COAD 63173909 + 63173889 63173929 41 GTGACCAATCCGAATGAAGTCAAGGTAAACCAGGTATGTCT GTGACCAATCCGAATGAAGTCAATGTAAACCAGGTATGTCT < 41bp 0.712011125084868 0.316528623341664 0.44168112 0.095446855 prediction 0.424022250169736 Functional Loss - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63173909 chr17:63173912 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_88064 0 0 0 0 3 RGS9 chr17:63173912 5'GT 63173912 Upstream 1bp
chr17 63173912 63173912 1 + G T COAD 63173909 + 63173889 63173929 41 GTGACCAATCCGAATGAAGTCAAGGTAAACCAGGTATGTCT GTGACCAATCCGAATGAAGTCAATGTAAACCAGGTATGTCT < 41bp 0.712011125084868 0.316528623341664 0.44168112 0.095446855 prediction 0.424022250169736 Functional Loss - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63173909 chr17:63173912 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_88064 0 0 0 0 3 RGS9 chr17:63173921 5'GT 63173921 Upstream 10bp
chrX 48675834 48675834 1 + C T GBM 48675832 + 48675812 48675852 41 ACTCTGTGGCTGTGGCTGCTCGCCATGCCCAGACTATCAGT ACTCTGTGGCTGTGGCTGCTCGTCATGCCCAGACTATCAGT < 41bp 0.865707342860031 0.653696884421787 0.44805068 0.061419755 prediction 0.424020916876488 Functional Loss - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48675832 chrX:48675834 synonymous SNV . 0 23 hm5C_associated_SNPs_88065 0 0 1 0 1 HDAC6 chrX:48675866 5'GT 48675866 Upstream 33bp
chr16 30997780 30997780 1 + G A SKCM 30997777 + 30997757 30997797 41 GATCGAGGCTTGTGTGCAGACCGGAACACGGTTCCTGGTCT GATCGAGGCTTGTGTGCAGACCGAAACACGGTTCCTGGTCT < 41bp 0.809905553127571 0.597897198677808 0.34171757 0.263838 prediction 0.424016708899527 Functional Loss - HSD3B7 ENSG00000099377 CDS Human protein_coding chr16:30997777 chr16:30997780 nonsynonymous SNV 0.558 3 24 hm5C_associated_SNPs_88067 0 0 1 0 2 HSD3B7 chr16:30997744 3'AG 30997744 Downstream 37bp
chr16 30997780 30997780 1 + G A SKCM 30997777 + 30997757 30997797 41 GATCGAGGCTTGTGTGCAGACCGGAACACGGTTCCTGGTCT GATCGAGGCTTGTGTGCAGACCGAAACACGGTTCCTGGTCT < 41bp 0.809905553127571 0.597897198677808 0.34171757 0.263838 prediction 0.424016708899527 Functional Loss - HSD3B7 ENSG00000099377 CDS Human protein_coding chr16:30997777 chr16:30997780 nonsynonymous SNV 0.558 3 24 hm5C_associated_SNPs_88067 0 0 1 0 2 HSD3B7 chr16:30997852 5'GT 30997852 Upstream 73bp
chr8 145608351 145608351 1 + C T UCEC 145608349 + 145608329 145608369 41 TAGTGGGGGCGCCCCTGCTCCTCGGAGCCCGCTATGTCATG TAGTGGGGGCGCCCCTGCTCCTTGGAGCCCGCTATGTCATG < 41bp 0.832929777499037 0.620931863607749 0.5916803 0.14092723 prediction 0.423995827782576 Functional Loss - ADCK5 ENSG00000173137 CDS Human protein_coding chr8:145608349 chr8:145608351 synonymous SNV . 0 23 hm5C_associated_SNPs_88070 0 0 1 0 2 ADCK5 chr8:145608282 3'AG 145608282 Downstream 70bp
chr8 145608351 145608351 1 + C T UCEC 145608349 + 145608329 145608369 41 TAGTGGGGGCGCCCCTGCTCCTCGGAGCCCGCTATGTCATG TAGTGGGGGCGCCCCTGCTCCTTGGAGCCCGCTATGTCATG < 41bp 0.832929777499037 0.620931863607749 0.5916803 0.14092723 prediction 0.423995827782576 Functional Loss - ADCK5 ENSG00000173137 CDS Human protein_coding chr8:145608349 chr8:145608351 synonymous SNV . 0 23 hm5C_associated_SNPs_88070 0 0 1 0 2 ADCK5 chr8:145608431 5'GT 145608431 Upstream 81bp
chrX 153061903 153061903 1 + G T UCEC 153061900 + 153061880 153061920 41 TCCCCGCAGCCGAGGCCTGCCTGGAGCCCCAGATCACCCCT TCCCCGCAGCCGAGGCCTGCCTGTAGCCCCAGATCACCCCT < 41bp 0.934740427772409 0.722749168114624 0.107455045 0.23258355 prediction 0.423982519315571 Functional Loss - SSR4 ENSG00000180879 CDS Human protein_coding chrX:153061900 chrX:153061903 stopgain 0.983 1 24 hm5C_associated_SNPs_88074 0 0 1 0 1 SSR4 chrX:153061889 3'AG 153061889 Downstream 15bp
chr10 124377610 124377610 1 + G A SKCM 124377607 + 124377587 124377627 41 GCCGAGTGGAGGTCCTATACCAAGGCTCCTGGGGCACCGTG GCCGAGTGGAGGTCCTATACCAAAGCTCCTGGGGCACCGTG < 41bp 0.711991181767638 0.472473265028496 0.89419234 0.8038457 prediction 0.423982363535277 Functional Loss - DMBT1 ENSG00000187908 CDS Human protein_coding chr10:124377607 chr10:124377610 nonsynonymous SNV 0.510 2 24 hm5C_associated_SNPs_88075 0 0 0 0 1 DMBT1 chr10:124377533 3'AG 124377533 Downstream 78bp
chr1 43770760 43770760 1 + C T BLCA 43770758 + 43770738 43770778 41 GCTTCTCCAAGCCCTCGGACCTCGTGGGCGTCTTCTCCTGC GCTTCTCCAAGCCCTCGGACCTTGTGGGCGTCTTCTCCTGC < 41bp 0.711987459591559 0.449879321452449 0.1483914 0.054529995 prediction 0.423974919183117 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43770758 chr1:43770760 synonymous SNV . 0 23 hm5C_associated_SNPs_88079 0 0 0 0 1 TIE1 chr1:43770836 5'GT 43770836 Upstream 77bp
chr9 140057063 140057063 1 + G T SARC 140057061 + 140057041 140057081 41 AGGCGCCCCCAGAAGCTTCTCAGCGCGCATCCTGGGCATGG AGGCGCCCCCAGAAGCTTCTCATCGCGCATCCTGGGCATGG < 41bp 0.711981088226506 0.348945835851919 0.31387234 0.062937915 prediction 0.423962176453012 Functional Loss - GRIN1 ENSG00000176884 CDS Human protein_coding chr9:140057061 chr9:140057063 nonsynonymous SNV 0.454 3 23 hm5C_associated_SNPs_88085 0 0 0 0 1 GRIN1 chr9:140057043 3'AG 140057043 Downstream 21bp
chr17 40093047 40093047 1 + G A BLCA 40093044 + 40093024 40093064 41 GCCCAGCAGAAGCCTCAGCCCATGAAACACCTCTTACACCC GCCCAGCAGAAGCCTCAGCCCATAAAACACCTCTTACACCC < 41bp 0.769343725439218 0.557362950441875 0.0799596 0.03455773 prediction 0.423961549994688 Functional Loss - TTC25 ENSG00000204815 ncRNA_exonic Human protein_coding chr17:40093044 chr17:40093047 . 0.397 0 24 hm5C_associated_SNPs_88086 0 0 1 0 1 TTC25 chr17:40093015 3'AG 40093015 Downstream 33bp
chr1 55277780 55277780 1 + G A SKCM 55277777 + 55277757 55277797 41 CGACCTTGAGACATATGTGGCACGATCCGTCGGCACCCGCG CGACCTTGAGACATATGTGGCACAATCCGTCGGCACCCGCG < 41bp 0.827150988474801 0.615171419256259 0.07195616 0.047073603 prediction 0.423959138437085 Functional Loss - LEXM ENSG00000162398 CDS Human protein_coding chr1:55277777 chr1:55277780 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_88087 0 0 0 0 2 LEXM chr1:55277719 3'AG 55277719 Downstream 62bp
chr1 55277780 55277780 1 + G A SKCM 55277777 + 55277757 55277797 41 CGACCTTGAGACATATGTGGCACGATCCGTCGGCACCCGCG CGACCTTGAGACATATGTGGCACAATCCGTCGGCACCCGCG < 41bp 0.827150988474801 0.615171419256259 0.07195616 0.047073603 prediction 0.423959138437085 Functional Loss - LEXM ENSG00000162398 CDS Human protein_coding chr1:55277777 chr1:55277780 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_88087 0 0 0 0 2 LEXM chr1:55277862 5'GT 55277862 Upstream 83bp
chr4 146567246 146567246 1 + C T UCEC 146567244 + 146567224 146567264 41 TTAGGAGGCGTGACAAGGACCACAAATGAAGCTATTCTGTT TTAGGAGGCGTGACAAGGACCATAAATGAAGCTATTCTGTT < 41bp 0.711976878524306 0.42046592630059 0.13271031 0.1506666 prediction 0.423953757048611 Functional Loss - MMAA ENSG00000151611 CDS Human protein_coding chr4:146567244 chr4:146567246 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_88088 0 0 0 2 1 MMAA chr4:146567308 5'GT 146567308 Upstream 63bp
chr7 134931250 134931250 1 + C T UCEC 134931247 + 134931227 134931267 41 CCGCAGGAGGCGGCGCTGCCCATCGTCTCCGCGGCCATCTC CCGCAGGAGGCGGCGCTGCCCATTGTCTCCGCGGCCATCTC < 41bp 0.714607340163998 0.502637529469326 0.110049844 0.2503922 prediction 0.423939621389343 Functional Loss - STRA8 ENSG00000146857 CDS Human protein_coding chr7:134931247 chr7:134931250 synonymous SNV . 0 24 hm5C_associated_SNPs_88091 0 0 0 0 1 STRA8 chr7:134931169 3'AG 134931169 Downstream 82bp
chr2 219452397 219452397 1 + T C UCEC 219452396 + 219452376 219452416 41 ATGTTTGCGAATTATGGAATCTGGAAGTGAACTTTCTAAAA ATGTTTGCGAATTATGGAATCCGGAAGTGAACTTTCTAAAA < 41bp 0.711967782089087 0.470604772042876 0.23449549 0.3347816 prediction 0.423935564178174 Functional Loss - CNOT9 ENSG00000144580 CDS Human protein_coding chr2:219452396 chr2:219452397 synonymous SNV . 0 22 hm5C_associated_SNPs_88093 0 0 1 0 2 CNOT9 chr2:219452309 3'AG 219452309 Downstream 89bp
chr2 219452397 219452397 1 + T C UCEC 219452396 + 219452376 219452416 41 ATGTTTGCGAATTATGGAATCTGGAAGTGAACTTTCTAAAA ATGTTTGCGAATTATGGAATCCGGAAGTGAACTTTCTAAAA < 41bp 0.711967782089087 0.470604772042876 0.23449549 0.3347816 prediction 0.423935564178174 Functional Loss - CNOT9 ENSG00000144580 CDS Human protein_coding chr2:219452396 chr2:219452397 synonymous SNV . 0 22 hm5C_associated_SNPs_88093 0 0 1 0 2 CNOT9 chr2:219452418 5'GT 219452418 Upstream 22bp
chr19 52877582 52877582 1 + C T SKCM 52877580 + 52877560 52877600 41 CTTCCTGACCTGAGTGTTATCTCCATGTTGGAGCAAAGGAG CTTCCTGACCTGAGTGTTATCTTCATGTTGGAGCAAAGGAG < 41bp 0.863519846780443 0.651555442544136 0.95431054 0.39245334 prediction 0.423928808472613 Functional Loss - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52877580 chr19:52877582 nonsynonymous SNV 0.226 0 23 hm5C_associated_SNPs_88094 0 0 1 0 3 ZNF880 chr19:52877552 3'AG 52877552 Downstream 31bp
chr19 52877582 52877582 1 + C T SKCM 52877580 + 52877560 52877600 41 CTTCCTGACCTGAGTGTTATCTCCATGTTGGAGCAAAGGAG CTTCCTGACCTGAGTGTTATCTTCATGTTGGAGCAAAGGAG < 41bp 0.863519846780443 0.651555442544136 0.95431054 0.39245334 prediction 0.423928808472613 Functional Loss - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52877580 chr19:52877582 nonsynonymous SNV 0.226 0 23 hm5C_associated_SNPs_88094 0 0 1 0 3 ZNF880 chr19:52877647 5'GT 52877647 Upstream 66bp
chr19 52877582 52877582 1 + C T SKCM 52877580 + 52877560 52877600 41 CTTCCTGACCTGAGTGTTATCTCCATGTTGGAGCAAAGGAG CTTCCTGACCTGAGTGTTATCTTCATGTTGGAGCAAAGGAG < 41bp 0.863519846780443 0.651555442544136 0.95431054 0.39245334 prediction 0.423928808472613 Functional Loss - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52877580 chr19:52877582 nonsynonymous SNV 0.226 0 23 hm5C_associated_SNPs_88094 0 0 1 0 3 ZNF880 chr19:52877680 5'GT 52877680 Upstream 99bp
chr19 41404196 41404196 1 + A C rs10419393 41404195 + 41404175 41404215 41 GTGTCCCCCACAACATCATCCAGGACACTCAGTTTCGAGGT GTGTCCCCCACAACATCATCCCGGACACTCAGTTTCGAGGT < 41bp 0.828900006547599 0.61693978608358 0.21202818 0.15124938 prediction 0.423920440928039 Functional Loss - CYP2G1P ENSG00000130612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:41404195 chr19:41404196 . . 0 22 hm5C_associated_SNPs_88100 0 0 0 0 1 CYP2G1P chr19:41404230 5'GT 41404230 Upstream 35bp
chr11 30255123 30255123 1 + G A UCEC 30255120 + 30255100 30255140 41 CTTCTTAAACTCCTCAGGATCTGGTGTATAAGGACCCAGCC CTTCTTAAACTCCTCAGGATCTGATGTATAAGGACCCAGCC < 41bp 0.730266333888024 0.518307557218665 0.3865195 0.18516573 prediction 0.423917553338719 Functional Loss - FSHB ENSG00000131808 CDS Human protein_coding chr11:30255120 chr11:30255123 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_88102 0 0 0 0 1 FSHB chr11:30255117 3'AG 30255117 Downstream 7bp
chr16 67006645 67006645 1 + A C UCEC 67006641 + 67006621 67006661 41 GCCCAGTGGACCCACTTTGCCCGGACAGGGTGAGTGAGTGA GCCCAGTGGACCCACTTTGCCCGGCCAGGGTGAGTGAGTGA < 41bp 0.711956621727162 0.29866991522065 0.012387037 0.02684921 prediction 0.423913243454324 Functional Loss - CES3 ENSG00000172828 CDS Human protein_coding chr16:67006641 chr16:67006645 nonsynonymous SNV 0.018 3 25 hm5C_associated_SNPs_88106 0 0 1 0 2 CES3 chr16:67006571 3'AG 67006571 Downstream 75bp
chr16 67006645 67006645 1 + A C UCEC 67006641 + 67006621 67006661 41 GCCCAGTGGACCCACTTTGCCCGGACAGGGTGAGTGAGTGA GCCCAGTGGACCCACTTTGCCCGGCCAGGGTGAGTGAGTGA < 41bp 0.711956621727162 0.29866991522065 0.012387037 0.02684921 prediction 0.423913243454324 Functional Loss - CES3 ENSG00000172828 CDS Human protein_coding chr16:67006641 chr16:67006645 nonsynonymous SNV 0.018 3 25 hm5C_associated_SNPs_88106 0 0 1 0 2 CES3 chr16:67006580 3'AG 67006580 Downstream 66bp
chr17 1649039 1649039 1 + G A SKCM 1649036 + 1649016 1649056 41 GACTGCCCTGAAGAGTCCCCCAGGAGTCTGCAGCAGAGACC GACTGCCCTGAAGAGTCCCCCAGAAGTCTGCAGCAGAGACC < 41bp 0.79239523083213 0.580439660144911 0.90173733 0.60356975 prediction 0.423911141374437 Functional Loss - SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1649036 chr17:1649039 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_88107 0 0 1 0 1 SERPINF2 chr17:1649002 3'AG 1649002 Downstream 38bp
chr11 45926334 45926334 1 + C T rs55963197 45926331 + 45926311 45926351 41 TCCAGCTGTGTCCTGGAGATCAGCGTGCGGGGTGTGAAGAT TCCAGCTGTGTCCTGGAGATCAGTGTGCGGGGTGTGAAGAT < 41bp 0.718308323374346 0.506356669488168 0.41772568 0.13026947 prediction 0.423903307772356 Functional Loss - MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926331 chr11:45926334 synonymous SNV . 0 24 hm5C_associated_SNPs_88111 0 0 0 0 2 MAPK8IP1 chr11:45926269 3'AG 45926269 Downstream 66bp
chr11 45926334 45926334 1 + C T rs55963197 45926331 + 45926311 45926351 41 TCCAGCTGTGTCCTGGAGATCAGCGTGCGGGGTGTGAAGAT TCCAGCTGTGTCCTGGAGATCAGTGTGCGGGGTGTGAAGAT < 41bp 0.718308323374346 0.506356669488168 0.41772568 0.13026947 prediction 0.423903307772356 Functional Loss - MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926331 chr11:45926334 synonymous SNV . 0 24 hm5C_associated_SNPs_88111 0 0 0 0 2 MAPK8IP1 chr11:45926385 5'GT 45926385 Upstream 52bp
chr20 33045246 33045246 1 + G A PAAD 33045243 + 33045223 33045263 41 ATATTTCGTCAACCACAACACACGAATTACACAATGGGAAG ATATTTCGTCAACCACAACACACAAATTACACAATGGGAAG < 41bp 0.767115182045937 0.555165349519918 0.06312394 0.03312087 prediction 0.423899665052038 Functional Loss - ITCH ENSG00000078747 CDS Human protein_coding chr20:33045243 chr20:33045246 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_88113 0 0 1 0 1 ITCH chr20:33045195 3'AG 33045195 Downstream 52bp
chr14 76965199 76965199 1 + G T LUAD 76965197 + 76965177 76965217 41 CCCCCTCCCCCATCTGTGGCCTGGGTGGGCACTGCTCAGGC CCCCCTCCCCCATCTGTGGCCTTGGTGGGCACTGCTCAGGC < 41bp 0.71194696734607 0.350825599646081 0.556599 0.34459966 prediction 0.423893934692139 Functional Loss - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76965197 chr14:76965199 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_88115 0 0 1 0 1 ESRRB chr14:76965255 5'GT 76965255 Upstream 57bp
chr11 2417893 2417893 1 + C T rs14077 2417890 + 2417870 2417910 41 CAGAAGATCGATGACCTCTTCTCCGGGAAGCTGTACCTCAT CAGAAGATCGATGACCTCTTCTCTGGGAAGCTGTACCTCAT < 41bp 0.764367083191654 0.55242382240693 0.3723849 0.53414756 prediction 0.423886521569449 Functional Loss - CD81 ENSG00000110651 CDS Human protein_coding chr11:2417890 chr11:2417893 synonymous SNV . 0 24 hm5C_associated_SNPs_88119 0 0 1 0 2 CD81 chr11:2417858 3'AG 2417858 Downstream 36bp
chr11 2417893 2417893 1 + C T rs14077 2417890 + 2417870 2417910 41 CAGAAGATCGATGACCTCTTCTCCGGGAAGCTGTACCTCAT CAGAAGATCGATGACCTCTTCTCTGGGAAGCTGTACCTCAT < 41bp 0.764367083191654 0.55242382240693 0.3723849 0.53414756 prediction 0.423886521569449 Functional Loss - CD81 ENSG00000110651 CDS Human protein_coding chr11:2417890 chr11:2417893 synonymous SNV . 0 24 hm5C_associated_SNPs_88119 0 0 1 0 2 CD81 chr11:2417944 5'GT 2417944 Upstream 52bp
chr7 39446249 39446249 1 + G A BRCA 39446246 + 39446226 39446266 41 GCTGCAGCGGCTGCAGCAGCCATGAGCTCCATAGCAAGCTC GCTGCAGCGGCTGCAGCAGCCATAAGCTCCATAGCAAGCTC < 41bp 0.758524309334447 0.546581200788665 0.16737777 0.5829104 prediction 0.423886217091563 Functional Loss - POU6F2 ENSG00000106536 CDS Human protein_coding chr7:39446246 chr7:39446249 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_88120 0 0 0 0 2 POU6F2 chr7:39446199 3'AG 39446199 Downstream 51bp
chr7 39446249 39446249 1 + G A BRCA 39446246 + 39446226 39446266 41 GCTGCAGCGGCTGCAGCAGCCATGAGCTCCATAGCAAGCTC GCTGCAGCGGCTGCAGCAGCCATAAGCTCCATAGCAAGCTC < 41bp 0.758524309334447 0.546581200788665 0.16737777 0.5829104 prediction 0.423886217091563 Functional Loss - POU6F2 ENSG00000106536 CDS Human protein_coding chr7:39446246 chr7:39446249 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_88120 0 0 0 0 2 POU6F2 chr7:39446339 5'GT 39446339 Upstream 91bp
chr11 44940772 44940772 1 + G A rs147332091 44940769 + 44940749 44940789 41 CTCCCTCTGCCCCCAGCTCACCCGAGAATTCTTCACCAAGG CTCCCTCTGCCCCCAGCTCACCCAAGAATTCTTCACCAAGG < 41bp 0.711941441269023 0.464272225304702 0.14917967 0.06141299 prediction 0.423882882538047 Functional Loss - TSPAN18 ENSG00000157570 CDS Human protein_coding chr11:44940769 chr11:44940772 nonsynonymous SNV 0.977 0 24 hm5C_associated_SNPs_88122 0 0 0 0 2 TSPAN18 chr11:44940765 3'AG 44940765 Downstream 8bp
chr11 44940772 44940772 1 + G A rs147332091 44940769 + 44940749 44940789 41 CTCCCTCTGCCCCCAGCTCACCCGAGAATTCTTCACCAAGG CTCCCTCTGCCCCCAGCTCACCCAAGAATTCTTCACCAAGG < 41bp 0.711941441269023 0.464272225304702 0.14917967 0.06141299 prediction 0.423882882538047 Functional Loss - TSPAN18 ENSG00000157570 CDS Human protein_coding chr11:44940769 chr11:44940772 nonsynonymous SNV 0.977 0 24 hm5C_associated_SNPs_88122 0 0 0 0 2 TSPAN18 chr11:44940863 5'GT 44940863 Upstream 92bp
chr11 44940771 44940771 1 + C T UCEC 44940769 + 44940749 44940789 41 CTCCCTCTGCCCCCAGCTCACCCGAGAATTCTTCACCAAGG CTCCCTCTGCCCCCAGCTCACCTGAGAATTCTTCACCAAGG < 41bp 0.711941441269023 0.42905313062538 0.14917967 0.23274508 prediction 0.423882882538047 Functional Loss - TSPAN18 ENSG00000157570 CDS Human protein_coding chr11:44940769 chr11:44940771 stopgain 0.980 0 23 hm5C_associated_SNPs_88123 0 0 0 0 2 TSPAN18 chr11:44940765 3'AG 44940765 Downstream 7bp
chr11 44940771 44940771 1 + C T UCEC 44940769 + 44940749 44940789 41 CTCCCTCTGCCCCCAGCTCACCCGAGAATTCTTCACCAAGG CTCCCTCTGCCCCCAGCTCACCTGAGAATTCTTCACCAAGG < 41bp 0.711941441269023 0.42905313062538 0.14917967 0.23274508 prediction 0.423882882538047 Functional Loss - TSPAN18 ENSG00000157570 CDS Human protein_coding chr11:44940769 chr11:44940771 stopgain 0.980 0 23 hm5C_associated_SNPs_88123 0 0 0 0 2 TSPAN18 chr11:44940863 5'GT 44940863 Upstream 93bp
chr5 376809 376809 1 + T C rs35008248 376808 + 376788 376828 41 CTCTTGCAGGGTCTGCCGTGCTGGAGGGAAGGCTGCTGTTG CTCTTGCAGGGTCTGCCGTGCCGGAGGGAAGGCTGCTGTTG < 41bp 0.809186557465731 0.597247418013772 0.54511684 0.87386066 prediction 0.423878278903918 Functional Loss - AHRR ENSG00000063438 CDS Human protein_coding chr5:376808 chr5:376809 nonsynonymous SNV 0.960 0 22 hm5C_associated_SNPs_88125 0 0 0 0 2 AHRR chr5:376725 3'AG 376725 Downstream 85bp
chr5 376809 376809 1 + T C rs35008248 376808 + 376788 376828 41 CTCTTGCAGGGTCTGCCGTGCTGGAGGGAAGGCTGCTGTTG CTCTTGCAGGGTCTGCCGTGCCGGAGGGAAGGCTGCTGTTG < 41bp 0.809186557465731 0.597247418013772 0.54511684 0.87386066 prediction 0.423878278903918 Functional Loss - AHRR ENSG00000063438 CDS Human protein_coding chr5:376808 chr5:376809 nonsynonymous SNV 0.960 0 22 hm5C_associated_SNPs_88125 0 0 0 0 2 AHRR chr5:376831 5'GT 376831 Upstream 23bp
chr13 50594405 50594405 1 + G A UCEC 50594402 + 50594382 50594422 41 TGGCCAACGGAACAAATGTCCTCGGCTTACTGATTGACACT TGGCCAACGGAACAAATGTCCTCAGCTTACTGATTGACACT < 41bp 0.733041010694911 0.521103108245697 0.27553385 0.16533998 prediction 0.423875804898428 Functional Loss - KCNRG ENSG00000198553 CDS Human protein_coding chr13:50594402 chr13:50594405 nonsynonymous SNV 0.964 3 24 hm5C_associated_SNPs_88126 0 0 0 9 1 KCNRG chr13:50594350 3'AG 50594350 Downstream 56bp
chr1 17263277 17263277 1 + G A rs200228265 17263274 + 17263254 17263294 41 AGGCCCTGCTGCAGGCCCAGCTGGAGGAGCAGCTGCGGGAC AGGCCCTGCTGCAGGCCCAGCTGAAGGAGCAGCTGCGGGAC < 41bp 0.804037118986373 0.59210177102146 0.8494494 0.84356785 prediction 0.423870695929825 Functional Loss - CROCC ENSG00000058453 CDS Human protein_coding chr1:17263274 chr1:17263277 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_88131 0 0 0 0 1 CROCC chr1:17263368 5'GT 17263368 Upstream 92bp
chr10 114173040 114173040 1 + G A UCEC 114173037 + 114173017 114173057 41 CACATTGTTTCCCGCGGTGCCTCGACTCCTTAACAGGATCT CACATTGTTTCCCGCGGTGCCTCAACTCCTTAACAGGATCT < 41bp 0.791573021368621 0.579637748163987 0.106978714 0.061934203 prediction 0.423870546409267 Functional Loss - ACSL5 ENSG00000197142 CDS Human protein_coding chr10:114173037 chr10:114173040 nonsynonymous SNV 0.979 4 24 hm5C_associated_SNPs_88132 0 0 1 0 1 ACSL5 chr10:114173065 5'GT 114173065 Upstream 26bp
chr11 65824372 65824372 1 + C T BLCA 65824370 + 65824350 65824390 41 CAAGATGGGCACCCCAGTCCCTCGGCCCCCACAAGACATGG CAAGATGGGCACCCCAGTCCCTTGGCCCCCACAAGACATGG < 41bp 0.858480317377567 0.646545867276894 0.07055277 0.08411726 prediction 0.423868900201345 Functional Loss - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824370 chr11:65824372 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_88135 0 0 1 0 1 SF3B2 chr11:65824309 3'AG 65824309 Downstream 64bp
chr20 19698204 19698204 1 + C T LIHC 19698201 + 19698181 19698221 41 AATAGCAGGGGGCTGATCTACTCCGTAGGCTTGCTCCTGGC AATAGCAGGGGGCTGATCTACTCTGTAGGCTTGCTCCTGGC < 41bp 0.713782987977397 0.501849266426483 0.71337014 0.27606446 prediction 0.423867443101828 Functional Loss - SLC24A3 ENSG00000185052 CDS Human protein_coding chr20:19698201 chr20:19698204 synonymous SNV . 0 24 hm5C_associated_SNPs_88136 0 0 0 0 2 SLC24A3 chr20:19698172 3'AG 19698172 Downstream 33bp
chr20 19698204 19698204 1 + C T LIHC 19698201 + 19698181 19698221 41 AATAGCAGGGGGCTGATCTACTCCGTAGGCTTGCTCCTGGC AATAGCAGGGGGCTGATCTACTCTGTAGGCTTGCTCCTGGC < 41bp 0.713782987977397 0.501849266426483 0.71337014 0.27606446 prediction 0.423867443101828 Functional Loss - SLC24A3 ENSG00000185052 CDS Human protein_coding chr20:19698201 chr20:19698204 synonymous SNV . 0 24 hm5C_associated_SNPs_88136 0 0 0 0 2 SLC24A3 chr20:19698237 5'GT 19698237 Upstream 34bp
chr1 37947259 37947259 1 + G A DLBC 37947256 + 37947236 37947276 41 GATCCTGGTGTTCACACCATCACGACGCGTGGGTGGCAAGC GATCCTGGTGTTCACACCATCACAACGCGTGGGTGGCAAGC < 41bp 0.809735675440539 0.597802590408079 0.20206404 0.18960285 prediction 0.42386617006492 Functional Loss - ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947256 chr1:37947259 nonsynonymous SNV 0.061 4 24 hm5C_associated_SNPs_88137 0 0 1 0 1 ZC3H12A chr1:37947202 3'AG 37947202 Downstream 58bp
chrX 47100702 47100702 1 + C T UCEC 47100699 + 47100679 47100719 41 CTCAGCAATGTGCCACAGCTCACCGAGTACTTCCTCAACAA CTCAGCAATGTGCCACAGCTCACTGAGTACTTCCTCAACAA < 41bp 0.724286430066459 0.512353969535074 0.3256606 0.30824554 prediction 0.42386492106277 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47100699 chrX:47100702 synonymous SNV . 0 24 hm5C_associated_SNPs_88138 0 0 1 0 1 USP11 chrX:47100676 3'AG 47100676 Downstream 27bp
chr1 19582539 19582539 1 + A C GBM 19582538 + 19582518 19582558 41 ACATCCGGAACGCCTGGAAGCACAGCCGGTGAGCGGGCAGG ACATCCGGAACGCCTGGAAGCCCAGCCGGTGAGCGGGCAGG < 41bp 0.711927974523198 0.446134887203384 0.63551927 0.31464803 prediction 0.423855949046395 Functional Loss - MRTO4 ENSG00000053372 CDS Human protein_coding chr1:19582538 chr1:19582539 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_88141 0 0 1 0 2 MRTO4 chr1:19582442 3'AG 19582442 Downstream 98bp
chr1 19582539 19582539 1 + A C GBM 19582538 + 19582518 19582558 41 ACATCCGGAACGCCTGGAAGCACAGCCGGTGAGCGGGCAGG ACATCCGGAACGCCTGGAAGCCCAGCCGGTGAGCGGGCAGG < 41bp 0.711927974523198 0.446134887203384 0.63551927 0.31464803 prediction 0.423855949046395 Functional Loss - MRTO4 ENSG00000053372 CDS Human protein_coding chr1:19582538 chr1:19582539 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_88141 0 0 1 0 2 MRTO4 chr1:19582545 5'GT 19582545 Upstream 7bp
chrX 153609158 153609158 1 + G C rs2070818 153609154 + 153609134 153609174 41 TCTTCTTCTGAAGAGGAGTGCAAGGATAGGTGCGTAGTGGG TCTTCTTCTGAAGAGGAGTGCAAGCATAGGTGCGTAGTGGG < 41bp 0.711927859937666 0.419974171006406 0.5777426 0.19347143 prediction 0.423855719875331 Functional Loss - EMD ENSG00000102119 CDS Human protein_coding chrX:153609154 chrX:153609158 nonsynonymous SNV 0.952 3 25 hm5C_associated_SNPs_88142 1 0 1 0 2 EMD chrX:153609113 3'AG 153609113 Downstream 46bp
chrX 153609158 153609158 1 + G C rs2070818 153609154 + 153609134 153609174 41 TCTTCTTCTGAAGAGGAGTGCAAGGATAGGTGCGTAGTGGG TCTTCTTCTGAAGAGGAGTGCAAGCATAGGTGCGTAGTGGG < 41bp 0.711927859937666 0.419974171006406 0.5777426 0.19347143 prediction 0.423855719875331 Functional Loss - EMD ENSG00000102119 CDS Human protein_coding chrX:153609154 chrX:153609158 nonsynonymous SNV 0.952 3 25 hm5C_associated_SNPs_88142 1 0 1 0 2 EMD chrX:153609162 5'GT 153609162 Upstream 5bp
chr7 151716773 151716773 1 + T C ESCA 151716772 + 151716752 151716792 41 CCTGGTCTGAAATATGTCACCTACGGAAATATTCGCGAGCG CCTGGTCTGAAATATGTCACCCACGGAAATATTCGCGAGCG < 41bp 0.711925771757142 0.481039746637522 0.07963812 0.059610844 prediction 0.423851543514285 Functional Loss - GALNTL5 ENSG00000106648 CDS Human protein_coding chr7:151716772 chr7:151716773 nonsynonymous SNV 0.015 3 22 hm5C_associated_SNPs_88146 0 0 0 0 1 GALNTL5 chr7:151716731 3'AG 151716731 Downstream 43bp
chr1 109271348 109271348 1 + G A rs11583590 109271345 + 109271325 109271365 41 ACTAATGATGATGCTACTTACACGGTGACTGCCCAAGGGGA ACTAATGATGATGCTACTTACACAGTGACTGCCCAAGGGGA < 41bp 0.81511974343534 0.603195100417918 0.3511835 0.04912147 prediction 0.423849286034844 Functional Loss - FNDC7 ENSG00000143107 CDS Human protein_coding chr1:109271345 chr1:109271348 synonymous SNV . 0 24 hm5C_associated_SNPs_88147 0 0 0 0 1 FNDC7 chr1:109271254 3'AG 109271254 Downstream 95bp
chr1 66058404 66058404 1 + A C UCEC 66058400 + 66058380 66058420 41 GGCAGTTTTCAGATGGTTCACTGCAATTGCAGTGTTCATGA GGCAGTTTTCAGATGGTTCACTGCCATTGCAGTGTTCATGA < 41bp 0.711923142688122 0.302032038224611 0.11733261 0.09700945 prediction 0.423846285376243 Functional Loss - LEPR ENSG00000116678 CDS Human protein_coding chr1:66058400 chr1:66058404 nonsynonymous SNV 0.197 3 25 hm5C_associated_SNPs_88149 0 0 1 0 1 LEPR chr1:66058340 3'AG 66058340 Downstream 65bp
chr19 51671545 51671545 1 + C T COAD 51671543 + 51671523 51671563 41 TCATCCCACGGCCTCAGGACCACGGCACCAACCTCATCTGT TCATCCCACGGCCTCAGGACCATGGCACCAACCTCATCTGT < 41bp 0.776988875169466 0.565066855310157 0.2284737 0.17662805 prediction 0.423844039718617 Functional Loss - SIGLEC17P ENSG00000171101 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:51671543 chr19:51671545 . . 0 23 hm5C_associated_SNPs_88150 0 0 0 0 1 SIGLEC17P chr19:51671624 5'GT 51671624 Upstream 80bp
chr16 31409184 31409184 1 + G T LUAD 31409182 + 31409162 31409202 41 CAAAGGGTTCCTGCCTCCTGCTGGGCTCGCGCTGGGAGATC CAAAGGGTTCCTGCCTCCTGCTTGGCTCGCGCTGGGAGATC < 41bp 0.711921114661188 0.347819905561721 0.34708863 0.097014636 prediction 0.423842229322377 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31409182 chr16:31409184 synonymous SNV . 0 23 hm5C_associated_SNPs_88151 0 0 0 0 2 ITGAD chr16:31409116 3'AG 31409116 Downstream 69bp
chr16 31409184 31409184 1 + G T LUAD 31409182 + 31409162 31409202 41 CAAAGGGTTCCTGCCTCCTGCTGGGCTCGCGCTGGGAGATC CAAAGGGTTCCTGCCTCCTGCTTGGCTCGCGCTGGGAGATC < 41bp 0.711921114661188 0.347819905561721 0.34708863 0.097014636 prediction 0.423842229322377 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31409182 chr16:31409184 synonymous SNV . 0 23 hm5C_associated_SNPs_88151 0 0 0 0 2 ITGAD chr16:31409230 5'GT 31409230 Upstream 47bp
chr16 31409185 31409185 1 + G T LUAD 31409182 + 31409162 31409202 41 CAAAGGGTTCCTGCCTCCTGCTGGGCTCGCGCTGGGAGATC CAAAGGGTTCCTGCCTCCTGCTGTGCTCGCGCTGGGAGATC < 41bp 0.711921114661188 0.296781659997514 0.34708863 0.14456412 prediction 0.423842229322377 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31409182 chr16:31409185 nonsynonymous SNV 0.349 3 24 hm5C_associated_SNPs_88152 0 0 0 0 2 ITGAD chr16:31409116 3'AG 31409116 Downstream 70bp
chr16 31409185 31409185 1 + G T LUAD 31409182 + 31409162 31409202 41 CAAAGGGTTCCTGCCTCCTGCTGGGCTCGCGCTGGGAGATC CAAAGGGTTCCTGCCTCCTGCTGTGCTCGCGCTGGGAGATC < 41bp 0.711921114661188 0.296781659997514 0.34708863 0.14456412 prediction 0.423842229322377 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31409182 chr16:31409185 nonsynonymous SNV 0.349 3 24 hm5C_associated_SNPs_88152 0 0 0 0 2 ITGAD chr16:31409230 5'GT 31409230 Upstream 46bp
chr1 65145388 65145388 1 + C T LUAD 65145385 + 65145365 65145405 41 TCCTGGCGGTGTATGCCTACCGCCACCAGATTCATCGCCGG TCCTGGCGGTGTATGCCTACCGCTACCAGATTCATCGCCGG < 41bp 0.760814766356084 0.548896271829055 0.18778643 0.16908154 prediction 0.423836989054058 Functional Loss - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65145385 chr1:65145388 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_88154 0 0 1 0 1 CACHD1 chr1:65145439 5'GT 65145439 Upstream 52bp
chr2 241813413 241813413 1 + C T LIHC 241813411 + 241813391 241813431 41 ACAGGCATCGACATCCTGTACTCGGGCTCCCAGAAGGCCCT ACAGGCATCGACATCCTGTACTTGGGCTCCCAGAAGGCCCT < 41bp 0.711915986252801 0.437549847140842 0.090807885 0.073966175 prediction 0.423831972505601 Functional Loss - AGXT ENSG00000172482 CDS Human protein_coding chr2:241813411 chr2:241813413 nonsynonymous SNV 0.019 4 23 hm5C_associated_SNPs_88156 1 0 0 0 2 AGXT chr2:241813395 3'AG 241813395 Downstream 19bp
chr2 241813413 241813413 1 + C T LIHC 241813411 + 241813391 241813431 41 ACAGGCATCGACATCCTGTACTCGGGCTCCCAGAAGGCCCT ACAGGCATCGACATCCTGTACTTGGGCTCCCAGAAGGCCCT < 41bp 0.711915986252801 0.437549847140842 0.090807885 0.073966175 prediction 0.423831972505601 Functional Loss - AGXT ENSG00000172482 CDS Human protein_coding chr2:241813411 chr2:241813413 nonsynonymous SNV 0.019 4 23 hm5C_associated_SNPs_88156 1 0 0 0 2 AGXT chr2:241813479 5'GT 241813479 Upstream 67bp
chr16 67670670 67670670 1 + C T HNSC 67670668 + 67670648 67670688 41 AATTGAACCTGAGCCAGAGCCTCAGCCTGTGACCCCAGCCC AATTGAACCTGAGCCAGAGCCTTAGCCTGTGACCCCAGCCC < 41bp 0.711914545127623 0.417891629112579 0.37249625 0.38802248 prediction 0.423829090255246 Functional Loss - CTCF ENSG00000102974 CDS Human protein_coding chr16:67670668 chr16:67670670 stopgain 0.998 0 23 hm5C_associated_SNPs_88161 0 0 1 0 1 CTCF chr16:67670593 3'AG 67670593 Downstream 78bp
chr12 125609479 125609479 1 + G A SKCM 125609476 + 125609456 125609496 41 CACAGTCTCCAGATGCTCCACACGATCCTGTCCACTGGCTC CACAGTCTCCAGATGCTCCACACAATCCTGTCCACTGGCTC < 41bp 0.711912781243915 0.46288693017844 0.008323997 0.008529544 prediction 0.423825562487831 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125609476 chr12:125609479 synonymous SNV . 0 24 hm5C_associated_SNPs_88163 0 0 0 0 2 AACS chr12:125609448 3'AG 125609448 Downstream 32bp
chr12 125609479 125609479 1 + G A SKCM 125609476 + 125609456 125609496 41 CACAGTCTCCAGATGCTCCACACGATCCTGTCCACTGGCTC CACAGTCTCCAGATGCTCCACACAATCCTGTCCACTGGCTC < 41bp 0.711912781243915 0.46288693017844 0.008323997 0.008529544 prediction 0.423825562487831 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125609476 chr12:125609479 synonymous SNV . 0 24 hm5C_associated_SNPs_88163 0 0 0 0 2 AACS chr12:125609570 5'GT 125609570 Upstream 92bp
chr3 130103709 130103709 1 + G A rs1453241 130103706 + 130103686 130103726 41 TTGATGGCTCAAGCAGCATCCAGGAGAAACAGTTTGAGCAA TTGATGGCTCAAGCAGCATCCAGAAGAAACAGTTTGAGCAA < 41bp 0.76431086803505 0.552399509262608 0.91576695 0.414999 prediction 0.423822717544885 Functional Loss - COL6A5 ENSG00000172752 CDS Human protein_coding chr3:130103706 chr3:130103709 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_88165 0 0 0 0 1 COL6A5 chr3:130103647 3'AG 130103647 Downstream 63bp
chr19 41737160 41737160 1 + C T SKCM 41737157 + 41737137 41737177 41 GGAGCTGGAGGTGGCTTGGACTCCAGGCCTGAGCGGCATCT GGAGCTGGAGGTGGCTTGGACTCTAGGCCTGAGCGGCATCT < 41bp 0.79835888902859 0.586454922494665 0.91465515 0.8457384 prediction 0.42380793306785 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41737157 chr19:41737160 nonsynonymous SNV 0.986 4 24 hm5C_associated_SNPs_88169 0 0 0 0 2 AXL chr19:41737088 3'AG 41737088 Downstream 73bp
chr19 41737160 41737160 1 + C T SKCM 41737157 + 41737137 41737177 41 GGAGCTGGAGGTGGCTTGGACTCCAGGCCTGAGCGGCATCT GGAGCTGGAGGTGGCTTGGACTCTAGGCCTGAGCGGCATCT < 41bp 0.79835888902859 0.586454922494665 0.91465515 0.8457384 prediction 0.42380793306785 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41737157 chr19:41737160 nonsynonymous SNV 0.986 4 24 hm5C_associated_SNPs_88169 0 0 0 0 2 AXL chr19:41737203 5'GT 41737203 Upstream 44bp
chr17 37900916 37900916 1 + G A GBM 37900913 + 37900893 37900933 41 ACTGACTTCGGTTTCTGTGTCAAGGTGAAGACCTGGCCAGG ACTGACTTCGGTTTCTGTGTCAAAGTGAAGACCTGGCCAGG < 41bp 0.822808745664963 0.610911064437603 0.90673685 0.5883132 prediction 0.423795362454719 Functional Loss - GRB7 ENSG00000141738 CDS Human protein_coding chr17:37900913 chr17:37900916 synonymous SNV . 0 24 hm5C_associated_SNPs_88171 0 0 1 0 1 GRB7 chr17:37900916 5'GT 37900916 Upstream 1bp
chr1 24082459 24082459 1 + C T BRCA 24082456 + 24082436 24082476 41 GGCTTCAGGACGCCCGAGAGCAGCGGCTACGAGTACTAACA GGCTTCAGGACGCCCGAGAGCAGTGGCTACGAGTACTAACA < 41bp 0.72293394438014 0.51103760991991 0.8273341 0.42040607 prediction 0.42379266892046 Functional Loss - ELOA ENSG00000011007 CDS Human protein_coding chr1:24082456 chr1:24082459 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_88172 0 0 1 0 1 ELOA chr1:24082513 5'GT 24082513 Upstream 55bp
chr11 314978 314978 1 + C T COAD 314975 + 314955 314995 41 GGGGCCCAGGCCTATGCCTCCACCGCCAAGTGCCTGAACAT GGGGCCCAGGCCTATGCCTCCACTGCCAAGTGCCTGAACAT < 41bp 0.714812191185513 0.502918024233723 0.2470035 0.20045656 prediction 0.42378833390358 Functional Loss - IFITM1 ENSG00000185201;ENSG00000185885 CDS Human other chr11:314975 chr11:314978 synonymous SNV . 0 24 hm5C_associated_SNPs_88175 0 0 0 0 1 IFITM1 chr11:314922 3'AG 314922 Downstream 57bp
chr17 34313607 34313607 1 + G A COAD 34313604 + 34313584 34313624 41 GGAAGACAAGGCATTGCACTCACGTGAGGAGGATTCAGTCT GGAAGACAAGGCATTGCACTCACATGAGGAGGATTCAGTCT < 41bp 0.711892634652897 0.46775222855838 0.43398598 0.20386094 prediction 0.423785269305795 Functional Loss - CCL14 ENSG00000213494;ENSG00000266956 CDS Human other chr17:34313604 chr17:34313607 stopgain 0.007 1 24 hm5C_associated_SNPs_88176 0 0 0 0 1 CCL15-CCL14 chr17:34313570 3'AG 34313570 Downstream 38bp
chr11 119057350 119057350 1 + G T COAD 119057348 + 119057328 119057368 41 CAGGGTCTTCAGGAAGGAGACAGGATCCTGGCGGTGAACAA CAGGGTCTTCAGGAAGGAGACATGATCCTGGCGGTGAACAA < 41bp 0.917447980428356 0.705558712632095 0.37209344 0.20435351 prediction 0.423778535592523 Functional Loss - PDZD3 ENSG00000172367 CDS Human protein_coding chr11:119057348 chr11:119057350 nonsynonymous SNV 0.987 3 23 hm5C_associated_SNPs_88180 0 0 0 0 1 PDZD3 chr11:119057399 5'GT 119057399 Upstream 50bp
chr17 30774031 30774031 1 + G A LUAD 30774028 + 30774008 30774048 41 AAGAGCAGAGCATCCTGGAACTGGGATCTCTCCTGGCAAAG AAGAGCAGAGCATCCTGGAACTGAGATCTCTCCTGGCAAAG < 41bp 0.815485054281571 0.60359622158582 0.88888466 0.41361126 prediction 0.423777665391502 Functional Loss - PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30774028 chr17:30774031 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_88181 0 0 1 0 2 PSMD11 chr17:30773963 3'AG 30773963 Downstream 69bp
chr17 30774031 30774031 1 + G A LUAD 30774028 + 30774008 30774048 41 AAGAGCAGAGCATCCTGGAACTGGGATCTCTCCTGGCAAAG AAGAGCAGAGCATCCTGGAACTGAGATCTCTCCTGGCAAAG < 41bp 0.815485054281571 0.60359622158582 0.88888466 0.41361126 prediction 0.423777665391502 Functional Loss - PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30774028 chr17:30774031 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_88181 0 0 1 0 2 PSMD11 chr17:30774064 5'GT 30774064 Upstream 34bp
chr1 167086657 167086657 1 + G A rs547250427 167086654 + 167086634 167086674 41 TGGTGGAGGACCTGTACAACCGCGTCAGGGAGAAGATGGAT TGGTGGAGGACCTGTACAACCGCATCAGGGAGAAGATGGAT < 41bp 0.711888642975043 0.470116831817696 0.3778955 0.24083367 prediction 0.423777285950086 Functional Loss - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167086654 chr1:167086657 nonsynonymous SNV 0.985 4 24 hm5C_associated_SNPs_88182 0 0 0 0 1 DUSP27 chr1:167086565 3'AG 167086565 Downstream 93bp
chr11 63978229 63978229 1 + C T BLCA 63978226 + 63978206 63978246 41 CCCAGCACCGGCCCGTCATCCTTCGGTTGCCCAACCGCCGC CCCAGCACCGGCCCGTCATCCTTTGGTTGCCCAACCGCCGC < 41bp 0.719740426086126 0.507855587509253 0.21207497 0.25336337 prediction 0.423769677153745 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63978226 chr11:63978229 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_88186 0 0 0 0 1 FERMT3 chr11:63978316 5'GT 63978316 Upstream 88bp
chr17 53345167 53345167 1 + G C LUAD 53345166 + 53345146 53345186 41 GGATGATGAGAGTAACAGCCCGACGGTCCCCCAGTCGGCAT GGATGATGAGAGTAACAGCCCCACGGTCCCCCAGTCGGCAT < 41bp 0.711881802776434 0.384822837493441 0.3976623 0.30053115 prediction 0.423763605552867 Functional Loss - HLF ENSG00000108924 CDS Human protein_coding chr17:53345166 chr17:53345167 synonymous SNV . 0 22 hm5C_associated_SNPs_88188 0 0 0 0 1 HLF chr17:53345112 3'AG 53345112 Downstream 56bp
chr4 83978514 83978514 1 + T C LUSC 83978513 + 83978493 83978533 41 TAGTCCACGAAAGTGAAAGACTAGAGGCCTTAAAACATGCT TAGTCCACGAAAGTGAAAGACCAGAGGCCTTAAAACATGCT < 41bp 0.711881223889564 0.44706262865108 0.42640615 0.5920016 prediction 0.423762447779128 Functional Loss - COPS4 ENSG00000138663 CDS Human protein_coding chr4:83978513 chr4:83978514 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_88189 0 0 1 0 1 COPS4 chr4:83978561 5'GT 83978561 Upstream 48bp
chr20 20270957 20270957 1 + T C LUSC 20270956 + 20270936 20270976 41 TCTTCTAGGGGGCATTCTTCCTGGGTCTTACCATTATCTGC TCTTCTAGGGGGCATTCTTCCCGGGTCTTACCATTATCTGC < 41bp 0.711879953316591 0.479104771318647 0.17982695 0.8077601 prediction 0.423759906633183 Functional Loss - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20270956 chr20:20270957 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_88190 0 0 0 0 2 CFAP61 chr20:20270944 3'AG 20270944 Downstream 14bp
chr20 20270957 20270957 1 + T C LUSC 20270956 + 20270936 20270976 41 TCTTCTAGGGGGCATTCTTCCTGGGTCTTACCATTATCTGC TCTTCTAGGGGGCATTCTTCCCGGGTCTTACCATTATCTGC < 41bp 0.711879953316591 0.479104771318647 0.17982695 0.8077601 prediction 0.423759906633183 Functional Loss - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20270956 chr20:20270957 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_88190 0 0 0 0 2 CFAP61 chr20:20271035 5'GT 20271035 Upstream 79bp
chr12 57961359 57961359 1 + C T UCEC 57961357 + 57961337 57961377 41 ACATGGAAACGGAGCAGAAGCTCAGTGGGAAGCTGTATCTG ACATGGAAACGGAGCAGAAGCTTAGTGGGAAGCTGTATCTG < 41bp 0.711878013440754 0.425284624818311 0.2622339 0.2805488 prediction 0.423756026881507 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57961357 chr12:57961359 synonymous SNV . 0 23 hm5C_associated_SNPs_88192 0 0 1 0 2 KIF5A chr12:57961277 3'AG 57961277 Downstream 83bp
chr12 57961359 57961359 1 + C T UCEC 57961357 + 57961337 57961377 41 ACATGGAAACGGAGCAGAAGCTCAGTGGGAAGCTGTATCTG ACATGGAAACGGAGCAGAAGCTTAGTGGGAAGCTGTATCTG < 41bp 0.711878013440754 0.425284624818311 0.2622339 0.2805488 prediction 0.423756026881507 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57961357 chr12:57961359 synonymous SNV . 0 23 hm5C_associated_SNPs_88192 0 0 1 0 2 KIF5A chr12:57961401 5'GT 57961401 Upstream 43bp
chr10 126671865 126671865 1 + G A UCEC 126671862 + 126671842 126671882 41 GGGAGAAACTTTAGGATATACTCGGTTTCAAGGTAAGCCAT GGGAGAAACTTTAGGATATACTCAGTTTCAAGGTAAGCCAT < 41bp 0.772726967402235 0.560851905224063 0.06747615 0.04982865 prediction 0.423750124356344 Functional Loss - ZRANB1 ENSG00000019995 CDS Human protein_coding chr10:126671862 chr10:126671865 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_88195 0 0 1 0 1 ZRANB1 chr10:126671873 5'GT 126671873 Upstream 9bp
chr19 45284210 45284210 1 + G T SARC 45284206 + 45284186 45284226 41 CATCTTCAGCCACATGCACGCAGAGCTGCACGCACTCTTCC CATCTTCAGCCACATGCACGCAGATCTGCACGCACTCTTCC < 41bp 0.717211169356618 0.505337904610077 0.91204786 0.873099 prediction 0.423746529493082 Functional Loss - CBLC ENSG00000142273 CDS Human protein_coding chr19:45284206 chr19:45284210 nonsynonymous SNV 0.003 4 25 hm5C_associated_SNPs_88196 0 0 0 0 2 CBLC chr19:45284162 3'AG 45284162 Downstream 49bp
chr19 45284210 45284210 1 + G T SARC 45284206 + 45284186 45284226 41 CATCTTCAGCCACATGCACGCAGAGCTGCACGCACTCTTCC CATCTTCAGCCACATGCACGCAGATCTGCACGCACTCTTCC < 41bp 0.717211169356618 0.505337904610077 0.91204786 0.873099 prediction 0.423746529493082 Functional Loss - CBLC ENSG00000142273 CDS Human protein_coding chr19:45284206 chr19:45284210 nonsynonymous SNV 0.003 4 25 hm5C_associated_SNPs_88196 0 0 0 0 2 CBLC chr19:45284308 5'GT 45284308 Upstream 99bp
chr15 41021818 41021818 1 + C T MESO 41021815 + 41021795 41021835 41 CCAGGTTTCTGCGGATGCTTCTGCGACTCGCTGATGAGGTA CCAGGTTTCTGCGGATGCTTCTGTGACTCGCTGATGAGGTA < 41bp 0.767705708694862 0.555833438572305 0.2994741 0.29549518 prediction 0.423744540245114 Functional Loss - RAD51 ENSG00000051180 CDS Human protein_coding chr15:41021815 chr15:41021818 stopgain 0.998 1 24 hm5C_associated_SNPs_88197 1 0 1 0 1 RAD51 chr15:41021832 5'GT 41021832 Upstream 15bp
chr12 57921393 57921393 1 + C T HNSC 57921391 + 57921371 57921411 41 CTGGGCAAGGCCCCCTCCAACTCAGGGAGACCCCCCCAACT CTGGGCAAGGCCCCCTCCAACTTAGGGAGACCCCCCCAACT < 41bp 0.711869638993673 0.43714215502908 0.9255184 0.8624748 prediction 0.423739277987346 Functional Loss - MBD6 ENSG00000166987 CDS Human protein_coding chr12:57921391 chr12:57921393 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_88199 0 0 1 2 1 MBD6 chr12:57921443 5'GT 57921443 Upstream 51bp
chr17 72349059 72349059 1 + C T COAD 72349056 + 72349036 72349076 41 TGAGCTCTGATGCCCAGCACCTGCAGAACAGCGCCCTCCCT TGAGCTCTGATGCCCAGCACCTGTAGAACAGCGCCCTCCCT < 41bp 0.766404635897832 0.554535737089239 0.11887166 0.07464072 prediction 0.423737797617186 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72349056 chr17:72349059 stopgain 0.003 0 24 hm5C_associated_SNPs_88200 0 0 0 0 2 KIF19 chr17:72348960 3'AG 72348960 Downstream 100bp
chr17 72349059 72349059 1 + C T COAD 72349056 + 72349036 72349076 41 TGAGCTCTGATGCCCAGCACCTGCAGAACAGCGCCCTCCCT TGAGCTCTGATGCCCAGCACCTGTAGAACAGCGCCCTCCCT < 41bp 0.766404635897832 0.554535737089239 0.11887166 0.07464072 prediction 0.423737797617186 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72349056 chr17:72349059 stopgain 0.003 0 24 hm5C_associated_SNPs_88200 0 0 0 0 2 KIF19 chr17:72349093 5'GT 72349093 Upstream 35bp
chr20 33586527 33586527 1 + G A SKCM 33586524 + 33586504 33586544 41 TCACTGGTGTCCCTGCAGGCCAAGAGTGCCCTGGCCCACGC TCACTGGTGTCCCTGCAGGCCAAAAGTGCCCTGGCCCACGC < 41bp 0.786541928172476 0.574675029965335 0.89518297 0.74852866 prediction 0.423733796414282 Functional Loss - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33586524 chr20:33586527 synonymous SNV . 0 24 hm5C_associated_SNPs_88203 0 0 0 0 1 MYH7B chr20:33586522 3'AG 33586522 Downstream 6bp
chr3 196457870 196457870 1 + G A rs78867326 196457867 + 196457847 196457887 41 CTACCACTTTTCTCAGAGTTCCCGATTTTGAAATGCTGGGC CTACCACTTTTCTCAGAGTTCCCAATTTTGAAATGCTGGGC < 41bp 0.711866622156849 0.471544378747147 0.01897201 0.06348166 prediction 0.423733244313699 Functional Loss - PIGX ENSG00000163964 CDS Human protein_coding chr3:196457867 chr3:196457870 synonymous SNV . 0 24 hm5C_associated_SNPs_88204 0 0 1 1 1 PIGX chr3:196457963 5'GT 196457963 Upstream 94bp
chr10 98078144 98078144 1 + C T COAD 98078142 + 98078122 98078162 41 CACATCGTAGCAGAGAACAACTCGGGTTCGGATGTTCTGGA CACATCGTAGCAGAGAACAACTTGGGTTCGGATGTTCTGGA < 41bp 0.711866540730612 0.421856409251944 0.88896596 0.78703344 prediction 0.423733081461223 Functional Loss - DNTT ENSG00000107447 CDS Human protein_coding chr10:98078142 chr10:98078144 nonsynonymous SNV 0.775 3 23 hm5C_associated_SNPs_88205 0 0 0 0 1 DNTT chr10:98078109 3'AG 98078109 Downstream 36bp
chr1 228004916 228004916 1 + G T LGG 228004913 + 228004893 228004933 41 TGTTCTCACCCCCACAGGGACAAGAATATCAAAATCTATGA TGTTCTCACCCCCACAGGGACAATAATATCAAAATCTATGA < 41bp 0.711866493624798 0.318543085584147 0.13941866 0.16668954 prediction 0.423732987249595 Functional Loss - PRSS38 ENSG00000185888 CDS Human protein_coding chr1:228004913 chr1:228004916 nonsynonymous SNV 0.025 2 24 hm5C_associated_SNPs_88206 0 0 0 0 1 PRSS38 chr1:228004910 3'AG 228004910 Downstream 7bp
chr2 27746177 27746177 1 + G A CESC 27746174 + 27746154 27746194 41 CTGAGCCTCCTATTCCGGTGCTCGATCACTGAGGCTCAGGC CTGAGCCTCCTATTCCGGTGCTCAATCACTGAGGCTCAGGC < 41bp 0.803193407353607 0.591330409480119 0.0472205 0.04382932 prediction 0.423725995746976 Functional Loss - GCKR ENSG00000084734 CDS Human protein_coding chr2:27746174 chr2:27746177 synonymous SNV . 0 24 hm5C_associated_SNPs_88209 0 0 0 0 1 GCKR chr2:27746136 3'AG 27746136 Downstream 42bp
chr6 149887639 149887639 1 + C T rs532883672 149887637 + 149887617 149887657 41 GGCTGGCTGACGACGGGCGCCCCCGAGCCGCCGCCGCTGTC GGCTGGCTGACGACGGGCGCCCTCGAGCCGCCGCCGCTGTC < 41bp 0.75686198764498 0.545000196734155 0.2825089 0.20243531 prediction 0.42372358182165 Functional Loss - GINM1 ENSG00000055211 CDS Human protein_coding chr6:149887637 chr6:149887639 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_88210 0 0 1 0 1 GINM1 chr6:149887670 5'GT 149887670 Upstream 32bp
chr2 132290277 132290277 1 + C T LUAD 132290274 + 132290254 132290294 41 CAATGATCCTGCCCCTTCCCCTGCGAAAGCCCACCACACTT CAATGATCCTGCCCCTTCCCCTGTGAAAGCCCACCACACTT < 41bp 0.717130559725099 0.505269559268959 0.3764137 0.24445197 prediction 0.423722000912282 Functional Loss - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132290274 chr2:132290277 stopgain 0.423 0 24 hm5C_associated_SNPs_88211 0 0 0 0 1 CCDC74A chr2:132290354 5'GT 132290354 Upstream 78bp
chr2 125262050 125262050 1 + G T LUSC 125262047 + 125262027 125262067 41 CACAGAGCTGTCTGAGGGCTCGGGAACCCTGCTGCTGAGCC CACAGAGCTGTCTGAGGGCTCGGTAACCCTGCTGCTGAGCC < 41bp 0.711858619467702 0.413920935291036 0.9047979 0.49740368 prediction 0.423717238935404 Functional Loss - CNTNAP5 ENSG00000155052 CDS Human protein_coding chr2:125262047 chr2:125262050 nonsynonymous SNV 0.981 4 24 hm5C_associated_SNPs_88213 0 0 0 0 1 CNTNAP5 chr2:125262133 5'GT 125262133 Upstream 84bp
chr11 134147678 134147678 1 + C T ESCA 134147676 + 134147656 134147696 41 AAAGCACAGGTCGGGGTAAGCCCCACTTCACACTGGAGGGC AAAGCACAGGTCGGGGTAAGCCTCACTTCACACTGGAGGGC < 41bp 0.711858381771047 0.425407606123786 0.25658357 0.15218043 prediction 0.423716763542094 Functional Loss - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134147676 chr11:134147678 synonymous SNV . 0 23 hm5C_associated_SNPs_88214 0 0 0 0 1 GLB1L3 chr11:134147594 3'AG 134147594 Downstream 85bp
chr17 48745100 48745100 1 + G A SKCM 48745097 + 48745077 48745117 41 CACACCACAACCACCTTCACCTGGATGTGCAGCCCCTTCCT CACACCACAACCACCTTCACCTGAATGTGCAGCCCCTTCCT < 41bp 0.828624164564984 0.61677032640828 0.67100984 0.28600773 prediction 0.423707676313408 Functional Loss - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48745097 chr17:48745100 stopgain 0.016 0 24 hm5C_associated_SNPs_88216 0 0 1 0 1 ABCC3 chr17:48745118 5'GT 48745118 Upstream 19bp
chr12 110019245 110019245 1 + C T UCEC 110019243 + 110019223 110019263 41 TAGTGTGGTCGGAGCTGCCCCCCGGGGCGGGCTTGGGCTCC TAGTGTGGTCGGAGCTGCCCCCTGGGGCGGGCTTGGGCTCC < 41bp 0.83268657123635 0.62083407211715 0.5511122 0.7222422 prediction 0.423704998238401 Functional Loss - MVK ENSG00000110921 CDS Human protein_coding chr12:110019243 chr12:110019245 synonymous SNV . 0 23 hm5C_associated_SNPs_88217 0 0 1 0 1 MVK chr12:110019200 3'AG 110019200 Downstream 46bp
chr5 7892945 7892945 1 + G T LUAD 7892942 + 7892922 7892962 41 CGGAAGGGAGTATGTACAGGCTGGCTGGCCTTGTTGGTTGC CGGAAGGGAGTATGTACAGGCTGTCTGGCCTTGTTGGTTGC < 41bp 0.711849825277883 0.321694524546011 0.06337401 0.018680543 prediction 0.423699650555766 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7892942 chr5:7892945 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_88218 0 0 1 0 1 MTRR chr5:7893026 5'GT 7893026 Upstream 82bp
chr7 99818435 99818435 1 + C T UCEC 99818433 + 99818413 99818453 41 CAGCCCCCAGGCACCGAGAGCACGAGCATGGGTGAGGAGGG CAGCCCCCAGGCACCGAGAGCATGAGCATGGGTGAGGAGGG < 41bp 0.826173227481734 0.61432893452021 0.26087895 0.22618267 prediction 0.423688585923048 Functional Loss - PVRIG ENSG00000213413 CDS Human protein_coding chr7:99818433 chr7:99818435 stopgain 0.001 0 23 hm5C_associated_SNPs_88223 0 0 0 0 2 PVRIG chr7:99818383 3'AG 99818383 Downstream 53bp
chr7 99818435 99818435 1 + C T UCEC 99818433 + 99818413 99818453 41 CAGCCCCCAGGCACCGAGAGCACGAGCATGGGTGAGGAGGG CAGCCCCCAGGCACCGAGAGCATGAGCATGGGTGAGGAGGG < 41bp 0.826173227481734 0.61432893452021 0.26087895 0.22618267 prediction 0.423688585923048 Functional Loss - PVRIG ENSG00000213413 CDS Human protein_coding chr7:99818433 chr7:99818435 stopgain 0.001 0 23 hm5C_associated_SNPs_88223 0 0 0 0 2 PVRIG chr7:99818443 5'GT 99818443 Upstream 9bp
chr1 213124047 213124047 1 + G A rs141388938 213124044 + 213124024 213124064 41 AGCCCCTGCTCTCCCGCCGCCCGGAGAGGCTCTGCAGCCAT AGCCCCTGCTCTCCCGCCGCCCGAAGAGGCTCTGCAGCCAT < 41bp 0.711843721431277 0.49461363385837 0.33713517 0.11579612 prediction 0.423687442862554 Functional Loss - VASH2 ENSG00000143494 UTR5 Human protein_coding chr1:213124044 chr1:213124047 . . 0 24 hm5C_associated_SNPs_88225 0 0 0 0 1 VASH2 chr1:213124082 5'GT 213124082 Upstream 36bp
chr5 68413208 68413208 1 + G A LGG 68413205 + 68413185 68413225 41 GATGAGTAGGTGGAAAGCCACTCGGATTTTCTCCTATGGGT GATGAGTAGGTGGAAAGCCACTCAGATTTTCTCCTATGGGT < 41bp 0.793184275045204 0.581341474053683 0.3212539 0.07357004 prediction 0.423685601983043 Functional Loss - SLC30A5 ENSG00000145740 CDS Human protein_coding chr5:68413205 chr5:68413208 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_88226 0 0 1 0 1 SLC30A5 chr5:68413223 5'GT 68413223 Upstream 16bp
chr12 75875790 75875790 1 + G A PAAD 75875787 + 75875767 75875807 41 GTGTCTTCCGCCATCACAAACTGGTATGACGAAATCCAGGA GTGTCTTCCGCCATCACAAACTGATATGACGAAATCCAGGA < 41bp 0.711840116953973 0.483482036717398 0.3963499 0.25240257 prediction 0.423680233907946 Functional Loss - GLIPR1 ENSG00000139278 CDS Human protein_coding chr12:75875787 chr12:75875790 stopgain 0.074 1 24 hm5C_associated_SNPs_88228 0 0 0 0 1 GLIPR1 chr12:75875859 5'GT 75875859 Upstream 70bp
chr11 60468530 60468530 1 + T C SKCM 60468529 + 60468509 60468549 41 GGCAGCCTGTGCAGAAAGCTCTGAAAGAAGGCAAAACCTTG GGCAGCCTGTGCAGAAAGCTCCGAAAGAAGGCAAAACCTTG < 41bp 0.799657679947338 0.587818665370204 0.1649743 0.24043727 prediction 0.423678029154267 Functional Loss - MS4A8 ENSG00000166959 CDS Human protein_coding chr11:60468529 chr11:60468530 nonsynonymous SNV 0.005 3 22 hm5C_associated_SNPs_88230 0 0 0 0 1 MS4A8 chr11:60468552 5'GT 60468552 Upstream 23bp
chr20 62867961 62867961 1 + G A COAD 62867958 + 62867938 62867978 41 TGGAAAGAAGGGAAAACTGTCAGGGGATGAGGTCCTCAGTC TGGAAAGAAGGGAAAACTGTCAGAGGATGAGGTCCTCAGTC < 41bp 0.801936525385917 0.590098757488008 0.94940376 0.9241779 prediction 0.423675535795817 Functional Loss - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62867958 chr20:62867961 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_88231 0 0 0 0 2 MYT1 chr20:62867908 3'AG 62867908 Downstream 54bp
chr20 62867961 62867961 1 + G A COAD 62867958 + 62867938 62867978 41 TGGAAAGAAGGGAAAACTGTCAGGGGATGAGGTCCTCAGTC TGGAAAGAAGGGAAAACTGTCAGAGGATGAGGTCCTCAGTC < 41bp 0.801936525385917 0.590098757488008 0.94940376 0.9241779 prediction 0.423675535795817 Functional Loss - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62867958 chr20:62867961 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_88231 0 0 0 0 2 MYT1 chr20:62867999 5'GT 62867999 Upstream 39bp
chr4 47563024 47563024 1 + G T UCEC 47563022 + 47563002 47563042 41 AATCATTTTTTAGCTGAAACCAGCATTGACAACAGGGAAGA AATCATTTTTTAGCTGAAACCATCATTGACAACAGGGAAGA < 41bp 0.711836426033659 0.384654805966852 0.14451852 0.03177941 prediction 0.423672852067318 Functional Loss - ATP10D ENSG00000145246 CDS Human protein_coding chr4:47563022 chr4:47563024 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_88234 0 0 0 0 2 ATP10D chr4:47562966 3'AG 47562966 Downstream 59bp
chr4 47563024 47563024 1 + G T UCEC 47563022 + 47563002 47563042 41 AATCATTTTTTAGCTGAAACCAGCATTGACAACAGGGAAGA AATCATTTTTTAGCTGAAACCATCATTGACAACAGGGAAGA < 41bp 0.711836426033659 0.384654805966852 0.14451852 0.03177941 prediction 0.423672852067318 Functional Loss - ATP10D ENSG00000145246 CDS Human protein_coding chr4:47563022 chr4:47563024 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_88234 0 0 0 0 2 ATP10D chr4:47563092 5'GT 47563092 Upstream 69bp
chr12 11905466 11905466 1 + G A UCEC 11905463 + 11905443 11905483 41 GCCACTTCATGTTCCAGTGCCTCGAGCGCTCAGGATGGAGG GCCACTTCATGTTCCAGTGCCTCAAGCGCTCAGGATGGAGG < 41bp 0.783402400843999 0.571569304580479 0.15144771 0.21057749 prediction 0.42366619252704 Functional Loss - ETV6 ENSG00000139083 CDS Human protein_coding chr12:11905463 chr12:11905466 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_88235 0 0 0 0 2 ETV6 chr12:11905384 3'AG 11905384 Downstream 83bp
chr12 11905466 11905466 1 + G A UCEC 11905463 + 11905443 11905483 41 GCCACTTCATGTTCCAGTGCCTCGAGCGCTCAGGATGGAGG GCCACTTCATGTTCCAGTGCCTCAAGCGCTCAGGATGGAGG < 41bp 0.783402400843999 0.571569304580479 0.15144771 0.21057749 prediction 0.42366619252704 Functional Loss - ETV6 ENSG00000139083 CDS Human protein_coding chr12:11905463 chr12:11905466 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_88235 0 0 0 0 2 ETV6 chr12:11905513 5'GT 11905513 Upstream 48bp
chr11 403947 403947 1 + G A BLCA 403944 + 403924 403964 41 GACCCCCGGCCTCCCACAGCCACGAAGGTGGTGAGCCACCT GACCCCCGGCCTCCCACAGCCACAAAGGTGGTGAGCCACCT < 41bp 0.780896053374819 0.569066967818147 0.19602504 0.20966503 prediction 0.423658171113344 Functional Loss - PKP3 ENSG00000184363 CDS Human protein_coding chr11:403944 chr11:403947 synonymous SNV . 0 24 hm5C_associated_SNPs_88237 0 0 0 0 1 PKP3 chr11:403943 3'AG 403943 Downstream 5bp
chr11 198215 198215 1 + G T COAD 198211 + 198191 198231 41 TTGTCCAGGTGACTACTTTCCAGAGAAATCCACCAAGTACG TTGTCCAGGTGACTACTTTCCAGATAAATCCACCAAGTACG < 41bp 0.71182826709572 0.499265224952478 0.71585125 0.38841352 prediction 0.423656534191439 Functional Loss - ODF3 ENSG00000177947 CDS Human protein_coding chr11:198211 chr11:198215 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_88238 0 0 0 3 2 ODF3 chr11:198199 3'AG 198199 Downstream 17bp
chr11 198215 198215 1 + G T COAD 198211 + 198191 198231 41 TTGTCCAGGTGACTACTTTCCAGAGAAATCCACCAAGTACG TTGTCCAGGTGACTACTTTCCAGATAAATCCACCAAGTACG < 41bp 0.71182826709572 0.499265224952478 0.71585125 0.38841352 prediction 0.423656534191439 Functional Loss - ODF3 ENSG00000177947 CDS Human protein_coding chr11:198211 chr11:198215 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_88238 0 0 0 3 2 ODF3 chr11:198300 5'GT 198300 Upstream 86bp
chr2 85662864 85662864 1 + G T COAD 85662860 + 85662840 85662880 41 TTCACCCTGGCAGTGCTTCTCCGAGGCCGGGTCTTCAACAT TTCACCCTGGCAGTGCTTCTCCGATGCCGGGTCTTCAACAT < 41bp 0.72742405134746 0.515598210507028 0.9257374 0.38751152 prediction 0.423651681680863 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85662860 chr2:85662864 nonsynonymous SNV 0.527 4 25 hm5C_associated_SNPs_88239 0 0 0 3 3 SH2D6 chr2:85662789 3'AG 85662789 Downstream 76bp
chr2 85662864 85662864 1 + G T COAD 85662860 + 85662840 85662880 41 TTCACCCTGGCAGTGCTTCTCCGAGGCCGGGTCTTCAACAT TTCACCCTGGCAGTGCTTCTCCGATGCCGGGTCTTCAACAT < 41bp 0.72742405134746 0.515598210507028 0.9257374 0.38751152 prediction 0.423651681680863 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85662860 chr2:85662864 nonsynonymous SNV 0.527 4 25 hm5C_associated_SNPs_88239 0 0 0 3 3 SH2D6 chr2:85662939 5'GT 85662939 Upstream 76bp
chr2 85662864 85662864 1 + G T COAD 85662860 + 85662840 85662880 41 TTCACCCTGGCAGTGCTTCTCCGAGGCCGGGTCTTCAACAT TTCACCCTGGCAGTGCTTCTCCGATGCCGGGTCTTCAACAT < 41bp 0.72742405134746 0.515598210507028 0.9257374 0.38751152 prediction 0.423651681680863 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85662860 chr2:85662864 nonsynonymous SNV 0.527 4 25 hm5C_associated_SNPs_88239 0 0 0 3 3 SH2D6 chr2:85662947 5'GT 85662947 Upstream 84bp
chr14 65197595 65197595 1 + G T CESC 65197593 + 65197573 65197613 41 GGGACCGGCAGGAGCTGCTACAGCACTCGCTGCCCTTGGGC GGGACCGGCAGGAGCTGCTACATCACTCGCTGCCCTTGGGC < 41bp 0.711821169975576 0.349400383791035 0.37571108 0.33081067 prediction 0.423642339951151 Functional Loss - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65197593 chr14:65197595 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_88241 0 0 0 0 2 PLEKHG3 chr14:65197517 3'AG 65197517 Downstream 79bp
chr14 65197595 65197595 1 + G T CESC 65197593 + 65197573 65197613 41 GGGACCGGCAGGAGCTGCTACAGCACTCGCTGCCCTTGGGC GGGACCGGCAGGAGCTGCTACATCACTCGCTGCCCTTGGGC < 41bp 0.711821169975576 0.349400383791035 0.37571108 0.33081067 prediction 0.423642339951151 Functional Loss - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65197593 chr14:65197595 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_88241 0 0 0 0 2 PLEKHG3 chr14:65197667 5'GT 65197667 Upstream 73bp
chr3 56651568 56651568 1 + C T SKCM 56651566 + 56651546 56651586 41 CTCTCAAAACAGAGGCATTTCACCAGAAATTTTTCATTCAT CTCTCAAAACAGAGGCATTTCATCAGAAATTTTTCATTCAT < 41bp 0.711820871688384 0.435244511388179 0.2763642 0.11771363 prediction 0.423641743376768 Functional Loss - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56651566 chr3:56651568 nonsynonymous SNV 0.942 0 23 hm5C_associated_SNPs_88242 0 0 1 0 1 CCDC66 chr3:56651633 5'GT 56651633 Upstream 66bp
chr2 204736161 204736161 1 + G A OV 204736158 + 204736138 204736178 41 GATCCTTGCAGCAGTTAGTTCGGGGTTGTTTTTTTATAGCT GATCCTTGCAGCAGTTAGTTCGGAGTTGTTTTTTTATAGCT < 41bp 0.785140462426167 0.573323084348841 0.9377748 0.8396461 prediction 0.423634756154653 Functional Loss - CTLA4 ENSG00000163599 CDS Human protein_coding chr2:204736158 chr2:204736161 nonsynonymous SNV 0.837 2 24 hm5C_associated_SNPs_88243 0 0 0 0 2 CTLA4 chr2:204736101 3'AG 204736101 Downstream 61bp
chr2 204736161 204736161 1 + G A OV 204736158 + 204736138 204736178 41 GATCCTTGCAGCAGTTAGTTCGGGGTTGTTTTTTTATAGCT GATCCTTGCAGCAGTTAGTTCGGAGTTGTTTTTTTATAGCT < 41bp 0.785140462426167 0.573323084348841 0.9377748 0.8396461 prediction 0.423634756154653 Functional Loss - CTLA4 ENSG00000163599 CDS Human protein_coding chr2:204736158 chr2:204736161 nonsynonymous SNV 0.837 2 24 hm5C_associated_SNPs_88243 0 0 0 0 2 CTLA4 chr2:204736210 5'GT 204736210 Upstream 50bp
chr5 110407633 110407633 1 + G A SKCM 110407630 + 110407610 110407650 41 TATGTTCTGTCAGTTTCTTTCAGGAAAATCTTCATCTTACA TATGTTCTGTCAGTTTCTTTCAGAAAAATCTTCATCTTACA < 41bp 0.767395158493439 0.555580329275029 0.9358406 0.92238355 prediction 0.423629658436821 Functional Loss - TSLP ENSG00000145777 CDS Human protein_coding chr5:110407630 chr5:110407633 synonymous SNV . 0 24 hm5C_associated_SNPs_88244 0 0 0 0 1 TSLP chr5:110407623 3'AG 110407623 Downstream 11bp
chr2 73446021 73446021 1 + G A BLCA 73446018 + 73445998 73446038 41 CTGTTTGCCACACAGCTCATCCGGAAGGGGGAGACCATCTT CTGTTTGCCACACAGCTCATCCGAAAGGGGGAGACCATCTT < 41bp 0.711810013781197 0.465744173068046 0.4127354 0.09675115 prediction 0.423620027562393 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73446018 chr2:73446021 synonymous SNV . 0 24 hm5C_associated_SNPs_88247 0 0 1 0 2 SMYD5 chr2:73445989 3'AG 73445989 Downstream 33bp
chr2 73446021 73446021 1 + G A BLCA 73446018 + 73445998 73446038 41 CTGTTTGCCACACAGCTCATCCGGAAGGGGGAGACCATCTT CTGTTTGCCACACAGCTCATCCGAAAGGGGGAGACCATCTT < 41bp 0.711810013781197 0.465744173068046 0.4127354 0.09675115 prediction 0.423620027562393 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73446018 chr2:73446021 synonymous SNV . 0 24 hm5C_associated_SNPs_88247 0 0 1 0 2 SMYD5 chr2:73446097 5'GT 73446097 Upstream 77bp
chr9 133948706 133948706 1 + G A SKCM 133948703 + 133948683 133948723 41 ACAGAGGCCCGTGCCCTCGCCAGGAGGTGAGTCCCAAGACA ACAGAGGCCCGTGCCCTCGCCAGAAGGTGAGTCCCAAGACA < 41bp 0.824296820564798 0.612495272292277 0.90264535 0.87429965 prediction 0.423603096545043 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133948703 chr9:133948706 synonymous SNV . 0 24 hm5C_associated_SNPs_88250 0 0 0 0 2 LAMC3 chr9:133948632 3'AG 133948632 Downstream 75bp
chr9 133948706 133948706 1 + G A SKCM 133948703 + 133948683 133948723 41 ACAGAGGCCCGTGCCCTCGCCAGGAGGTGAGTCCCAAGACA ACAGAGGCCCGTGCCCTCGCCAGAAGGTGAGTCCCAAGACA < 41bp 0.824296820564798 0.612495272292277 0.90264535 0.87429965 prediction 0.423603096545043 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133948703 chr9:133948706 synonymous SNV . 0 24 hm5C_associated_SNPs_88250 0 0 0 0 2 LAMC3 chr9:133948708 5'GT 133948708 Upstream 3bp
chr2 33525604 33525604 1 + G A SKCM 33525601 + 33525581 33525621 41 CCTTCAGGTGCACCTGTGGACAGGGGTACCAGCTGTCGGCA CCTTCAGGTGCACCTGTGGACAGAGGTACCAGCTGTCGGCA < 41bp 0.801861072195191 0.590061901100436 0.9200314 0.89971304 prediction 0.423598342189511 Functional Loss - LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33525601 chr2:33525604 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_88252 0 0 0 0 2 LTBP1 chr2:33525518 3'AG 33525518 Downstream 87bp
chr2 33525604 33525604 1 + G A SKCM 33525601 + 33525581 33525621 41 CCTTCAGGTGCACCTGTGGACAGGGGTACCAGCTGTCGGCA CCTTCAGGTGCACCTGTGGACAGAGGTACCAGCTGTCGGCA < 41bp 0.801861072195191 0.590061901100436 0.9200314 0.89971304 prediction 0.423598342189511 Functional Loss - LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33525601 chr2:33525604 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_88252 0 0 0 0 2 LTBP1 chr2:33525640 5'GT 33525640 Upstream 37bp
chr7 57522237 57522237 1 + G T LUAD 57522235 + 57522215 57522255 41 GGCAATGCCTGGATCATGCTCAGCAGAATTTATATAGAGAT GGCAATGCCTGGATCATGCTCATCAGAATTTATATAGAGAT < 41bp 0.711797595395269 0.376777913878765 0.5130692 0.22270939 prediction 0.423595190790538 Functional Loss - ZNF716 ENSG00000182111 CDS Human protein_coding chr7:57522235 chr7:57522237 nonsynonymous SNV 0.017 3 23 hm5C_associated_SNPs_88255 0 0 0 0 2 ZNF716 chr7:57522166 3'AG 57522166 Downstream 72bp
chr7 57522237 57522237 1 + G T LUAD 57522235 + 57522215 57522255 41 GGCAATGCCTGGATCATGCTCAGCAGAATTTATATAGAGAT GGCAATGCCTGGATCATGCTCATCAGAATTTATATAGAGAT < 41bp 0.711797595395269 0.376777913878765 0.5130692 0.22270939 prediction 0.423595190790538 Functional Loss - ZNF716 ENSG00000182111 CDS Human protein_coding chr7:57522235 chr7:57522237 nonsynonymous SNV 0.017 3 23 hm5C_associated_SNPs_88255 0 0 0 0 2 ZNF716 chr7:57522292 5'GT 57522292 Upstream 56bp
chr22 38469033 38469033 1 + C T SKCM 38469031 + 38469011 38469051 41 TGACGGATCTGAACACGTACCTCAACAAAGCCATCCCGGAC TGACGGATCTGAACACGTACCTTAACAAAGCCATCCCGGAC < 41bp 0.711797310041885 0.417340933594847 0.2791512 0.049369156 prediction 0.423594620083771 Functional Loss - PICK1 ENSG00000100151 CDS Human protein_coding chr22:38469031 chr22:38469033 synonymous SNV . 0 23 hm5C_associated_SNPs_88256 0 0 1 0 2 PICK1 chr22:38469007 3'AG 38469007 Downstream 27bp
chr22 38469033 38469033 1 + C T SKCM 38469031 + 38469011 38469051 41 TGACGGATCTGAACACGTACCTCAACAAAGCCATCCCGGAC TGACGGATCTGAACACGTACCTTAACAAAGCCATCCCGGAC < 41bp 0.711797310041885 0.417340933594847 0.2791512 0.049369156 prediction 0.423594620083771 Functional Loss - PICK1 ENSG00000100151 CDS Human protein_coding chr22:38469031 chr22:38469033 synonymous SNV . 0 23 hm5C_associated_SNPs_88256 0 0 1 0 2 PICK1 chr22:38469099 5'GT 38469099 Upstream 67bp
chr4 56878116 56878116 1 + G A rs145959811 56878113 + 56878093 56878133 41 ACACTGAGAGGAGACATCTTCGAGAAAGAGTGGAGCTATTA ACACTGAGAGGAGACATCTTCGAAAAAGAGTGGAGCTATTA < 41bp 0.711796994321376 0.49917522672313 0.6868847 0.3225081 prediction 0.423593988642752 Functional Loss - CEP135 ENSG00000174799 CDS Human protein_coding chr4:56878113 chr4:56878116 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_88257 1 0 0 0 1 CEP135 chr4:56878151 5'GT 56878151 Upstream 36bp
chrX 128926744 128926744 1 + C T UCEC 128926741 + 128926721 128926761 41 TGGGGCATGCCCGCCCCAGCCGCCGACAGAGCAAGGGCAAG TGGGGCATGCCCGCCCCAGCCGCTGACAGAGCAAGGGCAAG < 41bp 0.740979805626997 0.529184356745223 0.19970009 0.30773652 prediction 0.423590897763547 Functional Loss - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128926741 chrX:128926744 stopgain 1.000 0 24 hm5C_associated_SNPs_88258 0 0 0 0 1 SASH3 chrX:128926812 5'GT 128926812 Upstream 69bp
chrX 47030480 47030480 1 + G T LUSC 47030478 + 47030458 47030498 41 CTCAGCGTAGGCGGCGGCGGCGGCACAGGCACAGCCCCACC CTCAGCGTAGGCGGCGGCGGCGTCACAGGCACAGCCCCACC < 41bp 0.907573338271417 0.695778274732436 0.895551 0.8441695 prediction 0.423590127077962 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030478 chrX:47030480 synonymous SNV . 0 23 hm5C_associated_SNPs_88259 0 0 1 0 1 RBM10 chrX:47030427 3'AG 47030427 Downstream 54bp
chr14 23072887 23072887 1 + C T rs200132557 23072884 + 23072864 23072904 41 TTTCCCCTCCGACCAACTAACCCCAGTGAGATCCGTGCACC TTTCCCCTCCGACCAACTAACCCTAGTGAGATCCGTGCACC < 41bp 0.7630038421982 0.551210871257986 0.24998719 0.18932995 prediction 0.423585941880427 Functional Loss - ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23072884 chr14:23072887 synonymous SNV . 0 24 hm5C_associated_SNPs_88260 0 0 0 0 2 ABHD4 chr14:23072830 3'AG 23072830 Downstream 58bp
chr14 23072887 23072887 1 + C T rs200132557 23072884 + 23072864 23072904 41 TTTCCCCTCCGACCAACTAACCCCAGTGAGATCCGTGCACC TTTCCCCTCCGACCAACTAACCCTAGTGAGATCCGTGCACC < 41bp 0.7630038421982 0.551210871257986 0.24998719 0.18932995 prediction 0.423585941880427 Functional Loss - ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23072884 chr14:23072887 synonymous SNV . 0 24 hm5C_associated_SNPs_88260 0 0 0 0 2 ABHD4 chr14:23072984 5'GT 23072984 Upstream 98bp
chr1 28282221 28282221 1 + G C COAD 28282220 + 28282200 28282240 41 CATTGTCGGCCACGTGCCCCCGGGGTTCTTTGAGAAGACGC CATTGTCGGCCACGTGCCCCCCGGGTTCTTTGAGAAGACGC < 41bp 0.904073017438337 0.692283470142531 0.8899937 0.54935676 prediction 0.423579094591612 Functional Loss - SMPDL3B ENSG00000130768 CDS Human protein_coding chr1:28282220 chr1:28282221 synonymous SNV . 0 22 hm5C_associated_SNPs_88263 0 0 0 0 1 SMPDL3B chr1:28282195 3'AG 28282195 Downstream 27bp
chr11 68455550 68455550 1 + G A UCEC 68455547 + 68455527 68455567 41 CCAGCAAGCGGGAGCTGCGGCCCGAAGATGACATGAAACCA CCAGCAAGCGGGAGCTGCGGCCCAAAGATGACATGAAACCA < 41bp 0.711787899880578 0.462878555702583 0.43047288 0.5263162 prediction 0.423575799761156 Functional Loss - GAL ENSG00000069482 CDS Human protein_coding chr11:68455547 chr11:68455550 nonsynonymous SNV 0.004 1 24 hm5C_associated_SNPs_88265 0 0 1 0 2 GAL chr11:68455482 3'AG 68455482 Downstream 69bp
chr11 68455550 68455550 1 + G A UCEC 68455547 + 68455527 68455567 41 CCAGCAAGCGGGAGCTGCGGCCCGAAGATGACATGAAACCA CCAGCAAGCGGGAGCTGCGGCCCAAAGATGACATGAAACCA < 41bp 0.711787899880578 0.462878555702583 0.43047288 0.5263162 prediction 0.423575799761156 Functional Loss - GAL ENSG00000069482 CDS Human protein_coding chr11:68455547 chr11:68455550 nonsynonymous SNV 0.004 1 24 hm5C_associated_SNPs_88265 0 0 1 0 2 GAL chr11:68455568 5'GT 68455568 Upstream 19bp
chr5 176815190 176815190 1 + G T LUAD 176815188 + 176815168 176815208 41 CCTTCACGAAGCTCATCATCCAGGTGACAGCAGGGCCTGGC CCTTCACGAAGCTCATCATCCATGTGACAGCAGGGCCTGGC < 41bp 0.711775367274266 0.35012988540697 0.88270354 0.10774663 prediction 0.423550734548533 Functional Loss - SLC34A1 ENSG00000131183 CDS Human protein_coding chr5:176815188 chr5:176815190 nonsynonymous SNV 0.971 4 23 hm5C_associated_SNPs_88268 0 0 0 0 1 SLC34A1 chr5:176815190 5'GT 176815190 Upstream 1bp
chr22 31583119 31583119 1 + G C BLCA 31583115 + 31583095 31583135 41 GCCCTCGGCCTCTGCATCTCCTGAGAACTCCAGTGCAGGGG GCCCTCGGCCTCTGCATCTCCTGACAACTCCAGTGCAGGGG < 41bp 0.877385021029692 0.665611063435674 0.15653336 0.03199026 prediction 0.423547915188035 Functional Loss - RNF185 ENSG00000138942 CDS Human protein_coding chr22:31583115 chr22:31583119 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_88269 0 0 1 0 1 RNF185 chr22:31583033 3'AG 31583033 Downstream 87bp
chr6 13592051 13592051 1 + C T UCEC 13592048 + 13592028 13592068 41 CCCGGCTGGGCAAGCAGGGCCGGCGAGTCGTGGTCATCACC CCCGGCTGGGCAAGCAGGGCCGGTGAGTCGTGGTCATCACC < 41bp 0.711773571319179 0.491226219263543 0.43126312 0.33946744 prediction 0.423547142638357 Functional Loss - SIRT5 ENSG00000124523 CDS Human protein_coding chr6:13592048 chr6:13592051 stopgain 0.542 0 24 hm5C_associated_SNPs_88271 0 0 0 0 1 SIRT5 chr6:13592126 5'GT 13592126 Upstream 76bp
chr17 46926728 46926728 1 + C T SKCM 46926725 + 46926705 46926745 41 ACTCAGACATGCAGGCTGAGCTCCAAAAGAAGCAGGTATGG ACTCAGACATGCAGGCTGAGCTCTAAAAGAAGCAGGTATGG < 41bp 0.780173399494767 0.568402180774022 0.87729496 0.8641131 prediction 0.423542437441491 Functional Loss - CALCOCO2 ENSG00000136436 CDS Human protein_coding chr17:46926725 chr17:46926728 stopgain 0.869 0 24 hm5C_associated_SNPs_88274 0 0 1 0 1 CALCOCO2 chr17:46926739 5'GT 46926739 Upstream 12bp
chr4 74606378 74606378 1 + G T UCEC 74606375 + 74606355 74606395 41 ACCATCTCACTGTGTGTAAACATGACTTCCAAGCTGGCCGT ACCATCTCACTGTGTGTAAACATTACTTCCAAGCTGGCCGT < 41bp 0.711770357961462 0.462047949205773 0.29436973 0.07508248 prediction 0.423540715922925 Functional Loss - CXCL8 ENSG00000169429 CDS Human protein_coding chr4:74606375 chr4:74606378 nonsynonymous SNV 0.992 3 24 hm5C_associated_SNPs_88275 0 0 0 0 1 CXCL8 chr4:74606439 5'GT 74606439 Upstream 62bp
chr4 71465260 71465260 1 + G A SKCM 71465257 + 71465237 71465277 41 TTATCCATGTCTTTAGTATTCTAGATACGGCTTTGGAAAAT TTATCCATGTCTTTAGTATTCTAAATACGGCTTTGGAAAAT < 41bp 0.711769316573146 0.499058967128096 0.1998966 0.19053108 prediction 0.423538633146293 Functional Loss - AMBN ENSG00000178522 CDS Human protein_coding chr4:71465257 chr4:71465260 nonsynonymous SNV 0.974 0 24 hm5C_associated_SNPs_88276 0 0 0 0 1 AMBN chr4:71465253 3'AG 71465253 Downstream 8bp
chr1 170129793 170129793 1 + G T BRCA 170129790 + 170129770 170129810 41 ATTTCATTGAACTGTCCAGCCCAGACATCCAGGCCTCTCAG ATTTCATTGAACTGTCCAGCCCATACATCCAGGCCTCTCAG < 41bp 0.711767355595055 0.316824397940751 0.060517818 0.014385372 prediction 0.42353471119011 Functional Loss - METTL11B ENSG00000203740 CDS Human protein_coding chr1:170129790 chr1:170129793 nonsynonymous SNV 0.938 4 24 hm5C_associated_SNPs_88277 0 0 0 0 1 METTL11B chr1:170129834 5'GT 170129834 Upstream 42bp
chr2 241818185 241818185 1 + G A ESCA 241818182 + 241818162 241818202 41 CCACCCGCGAGAATGTGGACCGCGTGACGGAGGCCCTGAGG CCACCCGCGAGAATGTGGACCGCATGACGGAGGCCCTGAGG < 41bp 0.711766454080069 0.46649032333109 0.31492138 0.274307 prediction 0.423532908160138 Functional Loss - AGXT ENSG00000172482 CDS Human protein_coding chr2:241818182 chr2:241818185 nonsynonymous SNV 0.020 4 24 hm5C_associated_SNPs_88278 0 0 1 0 1 AGXT chr2:241818131 3'AG 241818131 Downstream 55bp
chr2 241818184 241818184 1 + C T UCEC 241818182 + 241818162 241818202 41 CCACCCGCGAGAATGTGGACCGCGTGACGGAGGCCCTGAGG CCACCCGCGAGAATGTGGACCGTGTGACGGAGGCCCTGAGG < 41bp 0.711766454080069 0.472375136072098 0.31492138 0.30987462 prediction 0.423532908160138 Functional Loss - AGXT ENSG00000172482 CDS Human protein_coding chr2:241818182 chr2:241818184 synonymous SNV . 0 23 hm5C_associated_SNPs_88279 0 0 1 0 1 AGXT chr2:241818131 3'AG 241818131 Downstream 54bp
chr10 71582155 71582155 1 + G A CESC 71582152 + 71582132 71582172 41 AGCTCCACTCAAGGAGGCGCCGGGAGGCCCCAAAGACATCT AGCTCCACTCAAGGAGGCGCCGGAAGGCCCCAAAGACATCT < 41bp 0.757661956276413 0.545904696319981 0.591649 0.28527144 prediction 0.423514519912865 Functional Loss - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71582152 chr10:71582155 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_88287 0 0 0 0 2 COL13A1 chr10:71582125 3'AG 71582125 Downstream 31bp
chr10 71582155 71582155 1 + G A CESC 71582152 + 71582132 71582172 41 AGCTCCACTCAAGGAGGCGCCGGGAGGCCCCAAAGACATCT AGCTCCACTCAAGGAGGCGCCGGAAGGCCCCAAAGACATCT < 41bp 0.757661956276413 0.545904696319981 0.591649 0.28527144 prediction 0.423514519912865 Functional Loss - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71582152 chr10:71582155 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_88287 0 0 0 0 2 COL13A1 chr10:71582194 5'GT 71582194 Upstream 40bp
chr5 150056366 150056366 1 + C T rs150546422 150056363 + 150056343 150056383 41 CCCTCAGTGGCTTGGAACTCCTCCGTCTCAGACCCAGCTTC CCCTCAGTGGCTTGGAACTCCTCTGTCTCAGACCCAGCTTC < 41bp 0.743151128986304 0.531393965332832 0.22384563 0.12278098 prediction 0.423514327306943 Functional Loss - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150056363 chr5:150056366 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_88288 0 0 0 0 1 MYOZ3 chr5:150056269 3'AG 150056269 Downstream 98bp
chr5 2753469 2753469 1 + G T LUAD 2753466 + 2753446 2753486 41 TCCTCCTGAGCCGGCAGGCTCCCGGTAGGCGCGGTCCAGGC TCCTCCTGAGCCGGCAGGCTCCCTGTAGGCGCGGTCCAGGC < 41bp 0.711755374338197 0.322424148462781 0.47049418 0.10011402 prediction 0.423510748676395 Functional Loss - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2753466 chr5:2753469 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_88290 0 0 0 0 2 C5orf38 chr5:2753399 3'AG 2753399 Downstream 71bp
chr5 2753469 2753469 1 + G T LUAD 2753466 + 2753446 2753486 41 TCCTCCTGAGCCGGCAGGCTCCCGGTAGGCGCGGTCCAGGC TCCTCCTGAGCCGGCAGGCTCCCTGTAGGCGCGGTCCAGGC < 41bp 0.711755374338197 0.322424148462781 0.47049418 0.10011402 prediction 0.423510748676395 Functional Loss - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2753466 chr5:2753469 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_88290 0 0 0 0 2 C5orf38 chr5:2753469 5'GT 2753469 Upstream 1bp
chr15 90799449 90799449 1 + G A SARC 90799446 + 90799426 90799466 41 GCAAGCCAGACAGTGGCTGTCAGGGACGTGGCATCTTCATT GCAAGCCAGACAGTGGCTGTCAGAGACGTGGCATCTTCATT < 41bp 0.711750780174368 0.473171288604909 0.9245059 0.90871257 prediction 0.423501560348737 Functional Loss - TTLL13P ENSG00000213471 CDS Human protein_coding chr15:90799446 chr15:90799449 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_88293 0 0 0 0 2 TTLL13P chr15:90799373 3'AG 90799373 Downstream 77bp
chr15 90799449 90799449 1 + G A SARC 90799446 + 90799426 90799466 41 GCAAGCCAGACAGTGGCTGTCAGGGACGTGGCATCTTCATT GCAAGCCAGACAGTGGCTGTCAGAGACGTGGCATCTTCATT < 41bp 0.711750780174368 0.473171288604909 0.9245059 0.90871257 prediction 0.423501560348737 Functional Loss - TTLL13P ENSG00000213471 CDS Human protein_coding chr15:90799446 chr15:90799449 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_88293 0 0 0 0 2 TTLL13P chr15:90799529 5'GT 90799529 Upstream 81bp
chr16 779346 779346 1 + C T rs556522308 779344 + 779324 779364 41 CCCCGCCGACGTCCTGGAGGCGCTATGCAAGGAGCGGGCGC CCCCGCCGACGTCCTGGAGGCGTTATGCAAGGAGCGGGCGC < 41bp 0.76509113391334 0.553341231825464 0.34760684 0.39622098 prediction 0.423499804175752 Functional Loss - HAGHL ENSG00000103253 CDS Human protein_coding chr16:779344 chr16:779346 synonymous SNV . 0 23 hm5C_associated_SNPs_88295 0 0 1 1 1 HAGHL chr16:779288 3'AG 779288 Downstream 59bp
chr2 121010518 121010518 1 + G A rs113189263 121010515 + 121010495 121010535 41 CGGGGCGCGTTTAAGAGCTGCGGGCCGGGTGCGGACGGCGG CGGGGCGCGTTTAAGAGCTGCGGACCGGGTGCGGACGGCGG < 41bp 0.712970458633748 0.501221744140656 0.75459 0.46976292 prediction 0.423497428986183 Functional Loss - RALB ENSG00000144118 UTR5 Human protein_coding chr2:121010515 chr2:121010518 . . 0 24 hm5C_associated_SNPs_88297 0 0 1 0 1 RALB chr2:121010556 5'GT 121010556 Upstream 39bp
chr11 46331546 46331546 1 + G A SKCM 46331543 + 46331523 46331563 41 GCTTGTCTGTTCCTCAGGCCCCGGGAGAGATGACTCAGCTG GCTTGTCTGTTCCTCAGGCCCCGAGAGAGATGACTCAGCTG < 41bp 0.711746803442292 0.457123109803723 0.31689915 0.1398364 prediction 0.423493606884584 Functional Loss - CREB3L1 ENSG00000157613 CDS Human protein_coding chr11:46331543 chr11:46331546 nonsynonymous SNV 0.951 1 24 hm5C_associated_SNPs_88300 0 0 0 0 2 CREB3L1 chr11:46331540 3'AG 46331540 Downstream 7bp
chr11 46331546 46331546 1 + G A SKCM 46331543 + 46331523 46331563 41 GCTTGTCTGTTCCTCAGGCCCCGGGAGAGATGACTCAGCTG GCTTGTCTGTTCCTCAGGCCCCGAGAGAGATGACTCAGCTG < 41bp 0.711746803442292 0.457123109803723 0.31689915 0.1398364 prediction 0.423493606884584 Functional Loss - CREB3L1 ENSG00000157613 CDS Human protein_coding chr11:46331543 chr11:46331546 nonsynonymous SNV 0.951 1 24 hm5C_associated_SNPs_88300 0 0 0 0 2 CREB3L1 chr11:46331618 5'GT 46331618 Upstream 73bp
chr10 89653818 89653818 1 + C T STAD 89653815 + 89653795 89653835 41 CATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGCG CATTATTGCTATGGGATTTCCTGTAGAAAGACTTGAAGGCG < 41bp 0.7117460702467 0.488366821874742 0.49496073 0.2656453 prediction 0.423492140493401 Functional Loss - PTEN ENSG00000171862 CDS Human protein_coding chr10:89653815 chr10:89653818 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_88301 0 0 1 0 2 PTEN chr10:89653782 3'AG 89653782 Downstream 37bp
chr10 89653818 89653818 1 + C T STAD 89653815 + 89653795 89653835 41 CATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGCG CATTATTGCTATGGGATTTCCTGTAGAAAGACTTGAAGGCG < 41bp 0.7117460702467 0.488366821874742 0.49496073 0.2656453 prediction 0.423492140493401 Functional Loss - PTEN ENSG00000171862 CDS Human protein_coding chr10:89653815 chr10:89653818 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_88301 0 0 1 0 2 PTEN chr10:89653866 5'GT 89653866 Upstream 49bp
chr20 21687627 21687627 1 + G A UCEC 21687624 + 21687604 21687644 41 GGGTCCCGGGCACGGCGGGCCACGTCAGCATCCCGCGCTCA GGGTCCCGGGCACGGCGGGCCACATCAGCATCCCGCGCTCA < 41bp 0.711745365224182 0.456305176940453 0.41580576 0.26205787 prediction 0.423490730448364 Functional Loss - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21687624 chr20:21687627 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_88302 0 0 0 0 1 PAX1 chr20:21687705 5'GT 21687705 Upstream 79bp
chr7 99818438 99818438 1 + G T UCEC 99818435 + 99818415 99818455 41 GCCCCCAGGCACCGAGAGCACGAGCATGGGTGAGGAGGGGA GCCCCCAGGCACCGAGAGCACGATCATGGGTGAGGAGGGGA < 41bp 0.711745277605097 0.314894142291141 0.4012011 0.1395225 prediction 0.423490555210194 Functional Loss - PVRIG ENSG00000213413 CDS Human protein_coding chr7:99818435 chr7:99818438 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_88303 0 0 0 0 2 PVRIG chr7:99818383 3'AG 99818383 Downstream 56bp
chr7 99818438 99818438 1 + G T UCEC 99818435 + 99818415 99818455 41 GCCCCCAGGCACCGAGAGCACGAGCATGGGTGAGGAGGGGA GCCCCCAGGCACCGAGAGCACGATCATGGGTGAGGAGGGGA < 41bp 0.711745277605097 0.314894142291141 0.4012011 0.1395225 prediction 0.423490555210194 Functional Loss - PVRIG ENSG00000213413 CDS Human protein_coding chr7:99818435 chr7:99818438 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_88303 0 0 0 0 2 PVRIG chr7:99818443 5'GT 99818443 Upstream 6bp
chr9 124064268 124064268 1 + G T PRAD 124064265 + 124064245 124064285 41 ACAGCATGGTGGTGGAACACCCCGAGTTCCTCAAGGCAGGG ACAGCATGGTGGTGGAACACCCCTAGTTCCTCAAGGCAGGG < 41bp 0.711745270788236 0.334437782158409 0.23598725 0.06001693 prediction 0.423490541576472 Functional Loss - GSN ENSG00000148180 CDS Human protein_coding chr9:124064265 chr9:124064268 stopgain 0.998 1 24 hm5C_associated_SNPs_88304 0 0 1 0 1 GSN chr9:124064241 3'AG 124064241 Downstream 28bp
chr12 131357591 131357591 1 + C T rs145207608 131357588 + 131357568 131357608 41 CATCCCCTAGTGTTCCACACCAACAGAGGACCTATTAAGTT CATCCCCTAGTGTTCCACACCAATAGAGGACCTATTAAGTT < 41bp 0.711743499164977 0.487632955444017 0.04598379 0.02439031 prediction 0.423486998329955 Functional Loss - RAN ENSG00000132341 CDS Human protein_coding chr12:131357588 chr12:131357591 synonymous SNV . 0 24 hm5C_associated_SNPs_88305 0 0 1 0 2 RAN chr12:131357548 3'AG 131357548 Downstream 44bp
chr12 131357591 131357591 1 + C T rs145207608 131357588 + 131357568 131357608 41 CATCCCCTAGTGTTCCACACCAACAGAGGACCTATTAAGTT CATCCCCTAGTGTTCCACACCAATAGAGGACCTATTAAGTT < 41bp 0.711743499164977 0.487632955444017 0.04598379 0.02439031 prediction 0.423486998329955 Functional Loss - RAN ENSG00000132341 CDS Human protein_coding chr12:131357588 chr12:131357591 synonymous SNV . 0 24 hm5C_associated_SNPs_88305 0 0 1 0 2 RAN chr12:131357673 5'GT 131357673 Upstream 83bp
chr1 52231533 52231533 1 + C T UCEC 52231530 + 52231510 52231550 41 ACCGAGTAGCAGTCTCACTTCTCCAAGCCACGTGAACTTGT ACCGAGTAGCAGTCTCACTTCTCTAAGCCACGTGAACTTGT < 41bp 0.794567169543528 0.582824078981058 0.9591659 0.9065572 prediction 0.423486181124942 Functional Loss - OSBPL9 ENSG00000117859 CDS Human protein_coding chr1:52231530 chr1:52231533 stopgain 1.000 3 24 hm5C_associated_SNPs_88306 0 0 1 0 1 OSBPL9 chr1:52231494 3'AG 52231494 Downstream 40bp
chr3 61734583 61734583 1 + C T SKCM 61734581 + 61734561 61734601 41 AAGGCTACGTTGGGGCCCTGCACGAGAATAGACACGGCAGC AAGGCTACGTTGGGGCCCTGCATGAGAATAGACACGGCAGC < 41bp 0.711740686679928 0.453426215211634 0.39077005 0.29232836 prediction 0.423481373359857 Functional Loss - PTPRG ENSG00000144724 CDS Human protein_coding chr3:61734581 chr3:61734583 synonymous SNV . 0 23 hm5C_associated_SNPs_88308 0 0 1 0 1 PTPRG chr3:61734656 5'GT 61734656 Upstream 74bp
chr12 102036228 102036228 1 + G T LUSC 102036225 + 102036205 102036245 41 AGCAGCAGGAGGAAGAACCCCAGGTGGACGTATGGGAGTTG AGCAGCAGGAGGAAGAACCCCAGTTGGACGTATGGGAGTTG < 41bp 0.71174008146219 0.323588831379688 0.90215266 0.40580153 prediction 0.42348016292438 Functional Loss - MYBPC1 ENSG00000196091 CDS Human protein_coding chr12:102036225 chr12:102036228 nonsynonymous SNV 0.447 0 24 hm5C_associated_SNPs_88309 0 0 0 0 1 MYBPC1 chr12:102036197 3'AG 102036197 Downstream 32bp
chr9 82323665 82323665 1 + C T rs117550856 82323662 + 82323642 82323682 41 CAGATGAGCGCAGCTGCTGCCGCCGCCGCTGCTGCTGCTGC CAGATGAGCGCAGCTGCTGCCGCTGCCGCTGCTGCTGCTGC < 41bp 0.725396206562531 0.513656577916588 0.43982548 0.3445453 prediction 0.423479257291885 Functional Loss - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82323662 chr9:82323665 synonymous SNV . 0 24 hm5C_associated_SNPs_88310 0 0 0 0 1 TLE4 chr9:82323701 5'GT 82323701 Upstream 37bp
chr1 110169909 110169909 1 + C T rs563198884 110169907 + 110169887 110169927 41 GCATGGTGCGGGGTGTGGTGCACGTCTACACCCGCAGGGAA GCATGGTGCGGGGTGTGGTGCATGTCTACACCCGCAGGGAA < 41bp 0.711739523938284 0.459704639600592 0.16050434 0.1651249 prediction 0.423479047876568 Functional Loss - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110169907 chr1:110169909 synonymous SNV . 0 23 hm5C_associated_SNPs_88311 0 0 1 0 1 AMPD2 chr1:110169938 5'GT 110169938 Upstream 30bp
chr1 150484274 150484274 1 + C T LUAD 150484272 + 150484252 150484292 41 GGGAGTTCCAGCGCTGCTGCCGCCAGGGGAACAATCACACC GGGAGTTCCAGCGCTGCTGCCGTCAGGGGAACAATCACACC < 41bp 0.84486251621146 0.633124176768304 0.7882606 0.45130533 prediction 0.423476678886313 Functional Loss - ECM1 ENSG00000143369 CDS Human protein_coding chr1:150484272 chr1:150484274 synonymous SNV . 0 23 hm5C_associated_SNPs_88312 0 0 1 0 1 ECM1 chr1:150484307 5'GT 150484307 Upstream 34bp
chr1 167086717 167086717 1 + C T UCEC 167086714 + 167086694 167086734 41 CGCCCTGTGTCCTGGACCTACAGCGGGCCCTGGTTCAGGAT CGCCCTGTGTCCTGGACCTACAGTGGGCCCTGGTTCAGGAT < 41bp 0.711734704942026 0.497873491698258 0.65673196 0.34615362 prediction 0.423469409884052 Functional Loss - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167086714 chr1:167086717 nonsynonymous SNV 0.366 4 24 hm5C_associated_SNPs_88315 0 0 0 0 1 DUSP27 chr1:167086796 5'GT 167086796 Upstream 80bp
chr19 1823683 1823683 1 + C T ESCA 1823681 + 1823661 1823701 41 TGGCGGGGGCCTGCAGCAAGCTCGCCGATGCCCTCTGCGCC TGGCGGGGGCCTGCAGCAAGCTTGCCGATGCCCTCTGCGCC < 41bp 0.711727267456769 0.460439485353075 0.64165336 0.6682843 prediction 0.423454534913538 Functional Loss - REXO1 ENSG00000079313 CDS Human protein_coding chr19:1823681 chr19:1823683 synonymous SNV . 0 23 hm5C_associated_SNPs_88317 0 0 0 0 2 REXO1 chr19:1823622 3'AG 1823622 Downstream 62bp
chr19 1823683 1823683 1 + C T ESCA 1823681 + 1823661 1823701 41 TGGCGGGGGCCTGCAGCAAGCTCGCCGATGCCCTCTGCGCC TGGCGGGGGCCTGCAGCAAGCTTGCCGATGCCCTCTGCGCC < 41bp 0.711727267456769 0.460439485353075 0.64165336 0.6682843 prediction 0.423454534913538 Functional Loss - REXO1 ENSG00000079313 CDS Human protein_coding chr19:1823681 chr19:1823683 synonymous SNV . 0 23 hm5C_associated_SNPs_88317 0 0 0 0 2 REXO1 chr19:1823715 5'GT 1823715 Upstream 33bp
chr17 56423650 56423650 1 + C T STAD 56423648 + 56423628 56423668 41 TCTGGATTTGTAGGCCACTCCTCGACTTTTCAGCTCCCGCA TCTGGATTTGTAGGCCACTCCTTGACTTTTCAGCTCCCGCA < 41bp 0.711721746197858 0.441819813480536 0.36159146 0.06119895 prediction 0.423443492395715 Functional Loss - SUPT4H1 ENSG00000213246 CDS Human protein_coding chr17:56423648 chr17:56423650 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_88323 0 0 0 0 2 SUPT4H1 chr17:56423641 3'AG 56423641 Downstream 10bp
chr17 56423650 56423650 1 + C T STAD 56423648 + 56423628 56423668 41 TCTGGATTTGTAGGCCACTCCTCGACTTTTCAGCTCCCGCA TCTGGATTTGTAGGCCACTCCTTGACTTTTCAGCTCCCGCA < 41bp 0.711721746197858 0.441819813480536 0.36159146 0.06119895 prediction 0.423443492395715 Functional Loss - SUPT4H1 ENSG00000213246 CDS Human antisense chr17:56423648 chr17:56423650 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_88323 0 0 0 0 2 TSPOAP1-AS1 chr17:56423704 5'GT 56423704 Upstream 55bp
chr6 25689416 25689416 1 + G A COAD 25689413 + 25689393 25689433 41 TATTTAGGATTCTGGCTCTTCAGGAAAACTTCCTTCTCCAA TATTTAGGATTCTGGCTCTTCAGAAAAACTTCCTTCTCCAA < 41bp 0.766475476439372 0.554753738792125 0.80224675 0.49263874 prediction 0.423443475294494 Functional Loss - SCGN ENSG00000079689 CDS Human protein_coding chr6:25689413 chr6:25689416 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_88324 0 0 0 0 2 SCGN chr6:25689400 3'AG 25689400 Downstream 17bp
chr6 25689416 25689416 1 + G A COAD 25689413 + 25689393 25689433 41 TATTTAGGATTCTGGCTCTTCAGGAAAACTTCCTTCTCCAA TATTTAGGATTCTGGCTCTTCAGAAAAACTTCCTTCTCCAA < 41bp 0.766475476439372 0.554753738792125 0.80224675 0.49263874 prediction 0.423443475294494 Functional Loss - SCGN ENSG00000079689 CDS Human protein_coding chr6:25689413 chr6:25689416 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_88324 0 0 0 0 2 SCGN chr6:25689445 5'GT 25689445 Upstream 30bp
chr1 177245363 177245363 1 + C T COAD 177245360 + 177245340 177245380 41 AGGTGCTGCTGCCTGAGTATCTGCGTGAGCGCTTTGTAGCT AGGTGCTGCTGCCTGAGTATCTGTGTGAGCGCTTTGTAGCT < 41bp 0.733707230966941 0.521993238035197 0.17568237 0.103841215 prediction 0.423427985863489 Functional Loss - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177245360 chr1:177245363 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_88329 0 0 0 0 1 BRINP2 chr1:177245334 3'AG 177245334 Downstream 30bp
chr2 99012315 99012315 1 + G T GBM 99012312 + 99012292 99012332 41 CATCTTCTTCTTTAGGTTTTCTCGAGCAAGGCTTAATGGTC CATCTTCTTCTTTAGGTTTTCTCTAGCAAGGCTTAATGGTC < 41bp 0.711713267221311 0.32930370655002 0.2272689 0.7886493 prediction 0.423426534442621 Functional Loss - CNGA3 ENSG00000144191 CDS Human protein_coding chr2:99012312 chr2:99012315 stopgain 0.954 1 24 hm5C_associated_SNPs_88330 0 0 0 0 1 CNGA3 chr2:99012307 3'AG 99012307 Downstream 9bp
chr14 23313665 23313665 1 + C T UCEC 23313662 + 23313642 23313682 41 CCAGTTCTGGCGGGGCCTGCCTGCGTCCATCAACACTGCCT CCAGTTCTGGCGGGGCCTGCCTGTGTCCATCAACACTGCCT < 41bp 0.744378619731416 0.532669595266533 0.09218988 0.059096903 prediction 0.423418048929767 Functional Loss - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23313662 chr14:23313665 nonsynonymous SNV 0.961 1 24 hm5C_associated_SNPs_88335 0 0 0 0 2 MMP14 chr14:23313580 3'AG 23313580 Downstream 86bp
chr14 23313665 23313665 1 + C T UCEC 23313662 + 23313642 23313682 41 CCAGTTCTGGCGGGGCCTGCCTGCGTCCATCAACACTGCCT CCAGTTCTGGCGGGGCCTGCCTGTGTCCATCAACACTGCCT < 41bp 0.744378619731416 0.532669595266533 0.09218988 0.059096903 prediction 0.423418048929767 Functional Loss - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23313662 chr14:23313665 nonsynonymous SNV 0.961 1 24 hm5C_associated_SNPs_88335 0 0 0 0 2 MMP14 chr14:23313718 5'GT 23313718 Upstream 54bp
chr3 100365527 100365527 1 + C T UCEC 100365524 + 100365504 100365544 41 ACAAGGGCACTGATGGATTCCTGCGCTGCCGCTGCAACCAT ACAAGGGCACTGATGGATTCCTGTGCTGCCGCTGCAACCAT < 41bp 0.745859313206501 0.534152623085843 0.042946845 0.06453395 prediction 0.423413380241314 Functional Loss - ADGRG7 ENSG00000144820 CDS Human protein_coding chr3:100365524 chr3:100365527 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_88337 0 0 0 0 1 ADGRG7 chr3:100365568 5'GT 100365568 Upstream 42bp
chr7 142021085 142021085 1 + G A LUSC 142021082 + 142021062 142021102 41 TCCCACAGGCCCAGTAAAGGCTGGAGTCACTCAAACTCCAA TCCCACAGGCCCAGTAAAGGCTGAAGTCACTCAAACTCCAA < 41bp 0.720509945491772 0.508804127077077 0.3518731 0.16765463 prediction 0.42341163682939 Functional Loss - TRY2P;MTRNR2L6 ENSG00000211734 CDS Human TR_V_gene chr7:142021082 chr7:142021085 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_88338 0 0 0 0 1 TRY2P;MTRNR2L6 chr7:142021070 3'AG 142021070 Downstream 16bp
chr2 242509547 242509547 1 + G A UCEC 242509544 + 242509524 242509564 41 ATCTCTCTCCCTGCAGGCATCACGTGGGGCAAGGTGGTGTC ATCTCTCTCCCTGCAGGCATCACATGGGGCAAGGTGGTGTC < 41bp 0.796963906410932 0.585260481519445 0.86748004 0.76564777 prediction 0.423406849782973 Functional Loss - BOK ENSG00000176720 CDS Human protein_coding chr2:242509544 chr2:242509547 synonymous SNV . 0 24 hm5C_associated_SNPs_88339 0 0 1 0 1 BOK chr2:242509540 3'AG 242509540 Downstream 8bp
chr1 34677952 34677952 1 + G T UCEC 34677949 + 34677929 34677969 41 CAAAGATGTCTGCCAACCCCCGAGACCCTCCCCTAATGGCA CAAAGATGTCTGCCAACCCCCGATACCCTCCCCTAATGGCA < 41bp 0.711698847434426 0.312664366914942 0.26134145 0.05599776 prediction 0.423397694868852 Functional Loss - C1orf94 ENSG00000142698 CDS Human protein_coding chr1:34677949 chr1:34677952 nonsynonymous SNV 0.904 4 24 hm5C_associated_SNPs_88340 0 0 0 0 1 C1orf94 chr1:34678007 5'GT 34678007 Upstream 56bp
chr7 154561175 154561175 1 + C T GBM 154561173 + 154561153 154561193 41 CACTGGTGGTCTCCGGATGGCACGAGACTCGCCTACGCCGC CACTGGTGGTCTCCGGATGGCATGAGACTCGCCTACGCCGC < 41bp 0.731655727398536 0.519961253310267 0.4207119 0.26906204 prediction 0.423388948176539 Functional Loss - DPP6 ENSG00000130226 CDS Human protein_coding chr7:154561173 chr7:154561175 nonsynonymous SNV 0.050 1 23 hm5C_associated_SNPs_88344 0 0 0 0 1 DPP6 chr7:154561127 3'AG 154561127 Downstream 49bp
chr19 16145740 16145740 1 + C T UCEC 16145738 + 16145718 16145758 41 CAGCCAGAGCGCCCAAAGAACTCGTGTCCCGCGCTCCTGAA CAGCCAGAGCGCCCAAAGAACTTGTGTCCCGCGCTCCTGAA < 41bp 0.802019380950237 0.590328170898918 0.18217346 0.22048688 prediction 0.423382420102639 Functional Loss - LINC00905 ENSG00000167459;ENSG00000267609 ncRNA_exonic Human other chr19:16145738 chr19:16145740 . . 0 23 hm5C_associated_SNPs_88346 0 0 0 0 1 LINC00905 chr19:16145822 5'GT 16145822 Upstream 83bp
chr10 106121840 106121840 1 + G T COAD 106121837 + 106121817 106121857 41 TATGACAAAGAGCAGAAGGCCAAGGAGACGATTCTTGCTCT TATGACAAAGAGCAGAAGGCCAATGAGACGATTCTTGCTCT < 41bp 0.711690215269715 0.3147769315975 0.3790477 0.1661812 prediction 0.423380430539429 Functional Loss - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106121837 chr10:106121840 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_88347 0 0 0 0 2 CFAP58 chr10:106121781 3'AG 106121781 Downstream 60bp
chr10 106121840 106121840 1 + G T COAD 106121837 + 106121817 106121857 41 TATGACAAAGAGCAGAAGGCCAAGGAGACGATTCTTGCTCT TATGACAAAGAGCAGAAGGCCAATGAGACGATTCTTGCTCT < 41bp 0.711690215269715 0.3147769315975 0.3790477 0.1661812 prediction 0.423380430539429 Functional Loss - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106121837 chr10:106121840 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_88347 0 0 0 0 2 CFAP58 chr10:106121929 5'GT 106121929 Upstream 90bp
chr17 42232031 42232031 1 + G A UCEC 42232028 + 42232008 42232048 41 AGTGTGGTTTTCAAGGACCCCACGGGTAAGGAATTAGGTCC AGTGTGGTTTTCAAGGACCCCACAGGTAAGGAATTAGGTCC < 41bp 0.800146144469202 0.588456722988573 0.2096858 0.1641882 prediction 0.423378842961259 Functional Loss - C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42232028 chr17:42232031 synonymous SNV . 0 24 hm5C_associated_SNPs_88348 0 0 0 0 1 C17orf53 chr17:42232032 5'GT 42232032 Upstream 2bp
chr5 36680565 36680565 1 + G A SKCM 36680562 + 36680542 36680582 41 TGGCGTGGACAAGCGCGTCACCAGATTCGTGCTCCCCGTAG TGGCGTGGACAAGCGCGTCACCAAATTCGTGCTCCCCGTAG < 41bp 0.795801188771753 0.584111803238536 0.79388404 0.2591579 prediction 0.423378771066435 Functional Loss - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36680562 chr5:36680565 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_88349 0 0 0 0 1 SLC1A3 chr5:36680497 3'AG 36680497 Downstream 69bp
chr12 97339519 97339519 1 + C T BLCA 97339517 + 97339497 97339537 41 GCTGGAGTTGCCAGTTCACTCTCAGAAAAAATAGCCGACAG GCTGGAGTTGCCAGTTCACTCTTAGAAAAAATAGCCGACAG < 41bp 0.860170923052254 0.648481588118132 0.13657588 0.14133146 prediction 0.423378669868244 Functional Loss - NEDD1 ENSG00000139350 CDS Human protein_coding chr12:97339517 chr12:97339519 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_88350 0 0 0 0 1 NEDD1 chr12:97339471 3'AG 97339471 Downstream 49bp
chr19 14674050 14674050 1 + G A UCEC 14674047 + 14674027 14674067 41 CACGCCACCATTGCGGAGATCAAGAACCTCTTCACTAAGAC CACGCCACCATTGCGGAGATCAAAAACCTCTTCACTAAGAC < 41bp 0.811100460670929 0.599411867601135 0.29212788 0.2727664 prediction 0.423377186139588 Functional Loss - TECR ENSG00000099797 CDS Human protein_coding chr19:14674047 chr19:14674050 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_88351 0 0 1 0 4 TECR chr19:14673953 3'AG 14673953 Downstream 98bp
chr19 14674050 14674050 1 + G A UCEC 14674047 + 14674027 14674067 41 CACGCCACCATTGCGGAGATCAAGAACCTCTTCACTAAGAC CACGCCACCATTGCGGAGATCAAAAACCTCTTCACTAAGAC < 41bp 0.811100460670929 0.599411867601135 0.29212788 0.2727664 prediction 0.423377186139588 Functional Loss - TECR ENSG00000099797 CDS Human protein_coding chr19:14674047 chr19:14674050 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_88351 0 0 1 0 4 TECR chr19:14673986 3'AG 14673986 Downstream 65bp
chr19 14674050 14674050 1 + G A UCEC 14674047 + 14674027 14674067 41 CACGCCACCATTGCGGAGATCAAGAACCTCTTCACTAAGAC CACGCCACCATTGCGGAGATCAAAAACCTCTTCACTAAGAC < 41bp 0.811100460670929 0.599411867601135 0.29212788 0.2727664 prediction 0.423377186139588 Functional Loss - TECR ENSG00000099797 CDS Human protein_coding chr19:14674047 chr19:14674050 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_88351 0 0 1 0 4 TECR chr19:14674018 3'AG 14674018 Downstream 33bp
chr19 14674050 14674050 1 + G A UCEC 14674047 + 14674027 14674067 41 CACGCCACCATTGCGGAGATCAAGAACCTCTTCACTAAGAC CACGCCACCATTGCGGAGATCAAAAACCTCTTCACTAAGAC < 41bp 0.811100460670929 0.599411867601135 0.29212788 0.2727664 prediction 0.423377186139588 Functional Loss - TECR ENSG00000099797 CDS Human protein_coding chr19:14674047 chr19:14674050 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_88351 0 0 1 0 4 TECR chr19:14674069 5'GT 14674069 Upstream 20bp
chr11 6291149 6291149 1 + G A LUSC 6291146 + 6291126 6291166 41 TGCAAGGCGGTTTCCTACCTCATGGGTGGGTGAGACAACCA TGCAAGGCGGTTTCCTACCTCATAGGTGGGTGAGACAACCA < 41bp 0.711687744196567 0.464291342515642 0.23617315 0.07691607 prediction 0.423375488393134 Functional Loss - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6291146 chr11:6291149 nonsynonymous SNV 0.989 3 24 hm5C_associated_SNPs_88353 0 0 0 0 1 CCKBR chr11:6291150 5'GT 6291150 Upstream 2bp
chr16 85667575 85667575 1 + G A SKCM 85667572 + 85667552 85667592 41 GGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAA GGGATGCTTTCCACCGCGACCAGAACCACCGCCACCGTCAA < 41bp 0.802594554387311 0.590907428019953 0.6725413 0.29542068 prediction 0.423374252734715 Functional Loss - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85667572 chr16:85667575 synonymous SNV . 0 24 hm5C_associated_SNPs_88354 0 0 1 0 1 GSE1 chr16:85667520 3'AG 85667520 Downstream 56bp
chr17 73780978 73780978 1 + G A COAD 73780975 + 73780955 73780995 41 CAAGACCATGTCGAAGGGCCCCGGGCCCGGCGGCTCCGCAG CAAGACCATGTCGAAGGGCCCCGAGCCCGGCGGCTCCGCAG < 41bp 0.796464547392848 0.584777810444432 0.84025025 0.3504631 prediction 0.423373473896833 Functional Loss - UNK ENSG00000132478 CDS Human protein_coding chr17:73780975 chr17:73780978 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_88355 0 0 1 0 1 UNK chr17:73781065 5'GT 73781065 Upstream 88bp
chr1 155581995 155581995 1 + T C UCEC 155581994 + 155581974 155582014 41 GCTTCCAGATCCTGTGTGACCTGCACGATGGCTTCTCTGGG GCTTCCAGATCCTGTGTGACCCGCACGATGGCTTCTCTGGG < 41bp 0.820983410253853 0.609301582837115 0.18750241 0.15115437 prediction 0.423363654833476 Functional Loss - MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155581994 chr1:155581995 nonsynonymous SNV 0.988 3 22 hm5C_associated_SNPs_88357 0 0 1 0 1 MSTO1 chr1:155581973 3'AG 155581973 Downstream 23bp
chr11 63670616 63670616 1 + G T LUSC 63670613 + 63670593 63670633 41 AGCCTCGGCCAGGCCTCCATCCAGAATGGCAAAGACAGGTG AGCCTCGGCCAGGCCTCCATCCATAATGGCAAAGACAGGTG < 41bp 0.711674638252013 0.313588005878429 0.46775815 0.30069423 prediction 0.423349276504026 Functional Loss - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63670613 chr11:63670616 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_88364 0 0 1 0 2 MARK2 chr11:63670533 3'AG 63670533 Downstream 84bp
chr11 63670616 63670616 1 + G T LUSC 63670613 + 63670593 63670633 41 AGCCTCGGCCAGGCCTCCATCCAGAATGGCAAAGACAGGTG AGCCTCGGCCAGGCCTCCATCCATAATGGCAAAGACAGGTG < 41bp 0.711674638252013 0.313588005878429 0.46775815 0.30069423 prediction 0.423349276504026 Functional Loss - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63670613 chr11:63670616 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_88364 0 0 1 0 2 MARK2 chr11:63670630 5'GT 63670630 Upstream 15bp
chr17 55752348 55752348 1 + G A LGG 55752345 + 55752325 55752365 41 CCCGGCAGGCTCCAACCCGGCGCGGCCCGGAGGCTTCCCGG CCCGGCAGGCTCCAACCCGGCGCAGCCCGGAGGCTTCCCGG < 41bp 0.770287758952053 0.558613187165424 0.34604472 0.2629902 prediction 0.423349143573259 Functional Loss - MSI2 ENSG00000153944 CDS Human protein_coding chr17:55752345 chr17:55752348 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_88365 0 0 1 0 2 MSI2 chr17:55752279 3'AG 55752279 Downstream 70bp
chr17 55752348 55752348 1 + G A LGG 55752345 + 55752325 55752365 41 CCCGGCAGGCTCCAACCCGGCGCGGCCCGGAGGCTTCCCGG CCCGGCAGGCTCCAACCCGGCGCAGCCCGGAGGCTTCCCGG < 41bp 0.770287758952053 0.558613187165424 0.34604472 0.2629902 prediction 0.423349143573259 Functional Loss - MSI2 ENSG00000153944 CDS Human protein_coding chr17:55752345 chr17:55752348 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_88365 0 0 1 0 2 MSI2 chr17:55752333 3'AG 55752333 Downstream 16bp
chr22 19420122 19420122 1 + G A SKCM 19420119 + 19420099 19420139 41 AGTATCTCGCTAGCCCTGCGCCCGACTAGCGGGTGAGTGCG AGTATCTCGCTAGCCCTGCGCCCAACTAGCGGGTGAGTGCG < 41bp 0.711673575037307 0.4684452107027 0.0149745345 0.0050088167 prediction 0.423347150074614 Functional Loss - MRPL40 ENSG00000185608 CDS Human protein_coding chr22:19420119 chr22:19420122 synonymous SNV . 0 24 hm5C_associated_SNPs_88366 0 0 1 0 1 MRPL40 chr22:19420130 5'GT 19420130 Upstream 9bp
chr1 32089221 32089221 1 + G A rs7516785 32089218 + 32089198 32089238 41 CCTGAGTGGAGAGCCCCAGCCCCGGGCCCGCGCCTTCCTGG CCTGAGTGGAGAGCCCCAGCCCCAGGCCCGCGCCTTCCTGG < 41bp 0.816018163374194 0.604345466305344 0.605675 0.38912874 prediction 0.4233453941377 Functional Loss - HCRTR1 ENSG00000121764 CDS Human protein_coding chr1:32089218 chr1:32089221 nonsynonymous SNV 0.929 2 24 hm5C_associated_SNPs_88367 0 0 0 0 1 HCRTR1 chr1:32089124 3'AG 32089124 Downstream 98bp
chr12 7470685 7470685 1 + G T UCEC 7470682 + 7470662 7470702 41 ATGTCTGACACGGGCTGGGTCAAGGCCGCCATTGGCAGTGT ATGTCTGACACGGGCTGGGTCAATGCCGCCATTGGCAGTGT < 41bp 0.71167142661651 0.296343845640287 0.4187488 0.23838595 prediction 0.42334285323302 Functional Loss - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7470682 chr12:7470685 nonsynonymous SNV 0.965 3 24 hm5C_associated_SNPs_88368 0 0 0 0 2 ACSM4 chr12:7470622 3'AG 7470622 Downstream 64bp
chr12 7470685 7470685 1 + G T UCEC 7470682 + 7470662 7470702 41 ATGTCTGACACGGGCTGGGTCAAGGCCGCCATTGGCAGTGT ATGTCTGACACGGGCTGGGTCAATGCCGCCATTGGCAGTGT < 41bp 0.71167142661651 0.296343845640287 0.4187488 0.23838595 prediction 0.42334285323302 Functional Loss - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7470682 chr12:7470685 nonsynonymous SNV 0.965 3 24 hm5C_associated_SNPs_88368 0 0 0 0 2 ACSM4 chr12:7470778 5'GT 7470778 Upstream 94bp
chr7 76909895 76909895 1 + C T COAD 76909893 + 76909873 76909913 41 AACATTGACAGACTTGCCAACACGATCACAATGATCGAAGA AACATTGACAGACTTGCCAACATGATCACAATGATCGAAGA < 41bp 0.711671192105463 0.420652868322437 0.07761264 0.117946476 prediction 0.423342384210926 Functional Loss - CCDC146 ENSG00000135205 CDS Human protein_coding chr7:76909893 chr7:76909895 nonsynonymous SNV 0.118 0 23 hm5C_associated_SNPs_88369 0 0 0 0 1 CCDC146 chr7:76909970 5'GT 76909970 Upstream 76bp
chr22 46704837 46704837 1 + G T GBM 46704833 + 46704813 46704853 41 AAGAAGCATCCCTGGGGCTGCGGAGAAGGTAAATGCCACAG AAGAAGCATCCCTGGGGCTGCGGATAAGGTAAATGCCACAG < 41bp 0.736382608520615 0.524715902995901 0.8198066 0.34211397 prediction 0.423333411049429 Functional Loss - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46704833 chr22:46704837 nonsynonymous SNV 0.668 3 25 hm5C_associated_SNPs_88372 0 0 1 0 1 GTSE1 chr22:46704840 5'GT 46704840 Upstream 4bp
chr16 31382514 31382514 1 + G A COAD 31382511 + 31382491 31382531 41 GGTGGACCTGGCTGTGGGGGCCCGGGGCCAGGTGCTCCTGC GGTGGACCTGGCTGTGGGGGCCCAGGGCCAGGTGCTCCTGC < 41bp 0.711662962647672 0.453552461061369 0.90298206 0.6529036 prediction 0.423325925295344 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31382511 chr16:31382514 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_88375 0 0 0 0 1 ITGAX chr16:31382535 5'GT 31382535 Upstream 22bp
chr2 159477619 159477619 1 + T C UCEC 159477618 + 159477598 159477638 41 ATTCACCAGAACAGACATCTCTCCATGAAAGTGAGGGTCTG ATTCACCAGAACAGACATCTCCCCATGAAAGTGAGGGTCTG < 41bp 0.711661240444883 0.435327072934936 0.9650193 0.07709542 prediction 0.423322480889766 Functional Loss - PKP4 ENSG00000144283 CDS Human protein_coding chr2:159477618 chr2:159477619 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_88377 0 0 1 0 1 PKP4 chr2:159477627 5'GT 159477627 Upstream 9bp
chr16 50667159 50667159 1 + C T CESC 50667157 + 50667137 50667177 41 CCCCCGCACCTCCAATCCCACTCGATCTCGCTCCCATGAGC CCCCCGCACCTCCAATCCCACTTGATCTCGCTCCCATGAGC < 41bp 0.711660928950944 0.421539944698741 0.13382348 0.03661579 prediction 0.423321857901889 Functional Loss - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50667157 chr16:50667159 stopgain 0.941 1 23 hm5C_associated_SNPs_88378 0 0 0 0 1 NKD1 chr16:50667103 3'AG 50667103 Downstream 57bp
chr17 40173632 40173632 1 + G T SARC 40173629 + 40173609 40173649 41 GCAAGGTGGTCGTGTGTGGCCAGGCGTCTGTGGGCAAAACT GCAAGGTGGTCGTGTGTGGCCAGTCGTCTGTGGGCAAAACT < 41bp 0.711660619576299 0.308407043521537 0.7200321 0.06208086 prediction 0.423321239152598 Functional Loss - NKIRAS2 ENSG00000168256 CDS Human protein_coding chr17:40173629 chr17:40173632 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_88379 0 0 1 0 2 NKIRAS2 chr17:40173582 3'AG 40173582 Downstream 51bp
chr17 40173632 40173632 1 + G T SARC 40173629 + 40173609 40173649 41 GCAAGGTGGTCGTGTGTGGCCAGGCGTCTGTGGGCAAAACT GCAAGGTGGTCGTGTGTGGCCAGTCGTCTGTGGGCAAAACT < 41bp 0.711660619576299 0.308407043521537 0.7200321 0.06208086 prediction 0.423321239152598 Functional Loss - NKIRAS2 ENSG00000168256 CDS Human protein_coding chr17:40173629 chr17:40173632 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_88379 0 0 1 0 2 NKIRAS2 chr17:40173689 5'GT 40173689 Upstream 58bp
chr5 148679880 148679880 1 + G A rs80089509 148679877 + 148679857 148679897 41 GTGAACACAGCAGACCTCCACTCGGGGCCCAGCTTCGTGGA GTGAACACAGCAGACCTCCACTCAGGGCCCAGCTTCGTGGA < 41bp 0.818058186879412 0.606398594574359 0.20037243 0.037411302 prediction 0.423319184610106 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148679877 chr5:148679880 synonymous SNV . 0 24 hm5C_associated_SNPs_88380 0 0 0 0 2 AFAP1L1 chr5:148679834 3'AG 148679834 Downstream 47bp
chr5 148679880 148679880 1 + G A rs80089509 148679877 + 148679857 148679897 41 GTGAACACAGCAGACCTCCACTCGGGGCCCAGCTTCGTGGA GTGAACACAGCAGACCTCCACTCAGGGCCCAGCTTCGTGGA < 41bp 0.818058186879412 0.606398594574359 0.20037243 0.037411302 prediction 0.423319184610106 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148679877 chr5:148679880 synonymous SNV . 0 24 hm5C_associated_SNPs_88380 0 0 0 0 2 AFAP1L1 chr5:148679917 5'GT 148679917 Upstream 38bp
chr11 31531540 31531540 1 + T C UCEC 31531539 + 31531519 31531559 41 TATCAACCGGGCTCCCAGCCCTAGACCAGCTCTTAGGTCGG TATCAACCGGGCTCCCAGCCCCAGACCAGCTCTTAGGTCGG < 41bp 0.792007845352491 0.580351179324506 0.49486452 0.35070148 prediction 0.42331333205597 Functional Loss - ELP4 ENSG00000109911 CDS Human protein_coding chr11:31531539 chr11:31531540 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_88382 0 0 1 0 1 ELP4 chr11:31531554 5'GT 31531554 Upstream 15bp
chr2 71894600 71894600 1 + G A BLCA 71894597 + 71894577 71894617 41 CAGGGCCTGGTCCCGGAGCACGTGGAGTCACGGCCCCTCTA CAGGGCCTGGTCCCGGAGCACGTAGAGTCACGGCCCCTCTA < 41bp 0.715637936358704 0.503982138461337 0.8982432 0.3942418 prediction 0.423311595794734 Functional Loss - DYSF ENSG00000135636 CDS Human protein_coding chr2:71894597 chr2:71894600 synonymous SNV . 0 24 hm5C_associated_SNPs_88383 0 0 0 0 2 DYSF chr2:71894506 3'AG 71894506 Downstream 95bp
chr2 71894600 71894600 1 + G A BLCA 71894597 + 71894577 71894617 41 CAGGGCCTGGTCCCGGAGCACGTGGAGTCACGGCCCCTCTA CAGGGCCTGGTCCCGGAGCACGTAGAGTCACGGCCCCTCTA < 41bp 0.715637936358704 0.503982138461337 0.8982432 0.3942418 prediction 0.423311595794734 Functional Loss - DYSF ENSG00000135636 CDS Human protein_coding chr2:71894597 chr2:71894600 synonymous SNV . 0 24 hm5C_associated_SNPs_88383 0 0 0 0 2 DYSF chr2:71894645 5'GT 71894645 Upstream 46bp
chr8 1626441 1626441 1 + G A LUAD 1626438 + 1626418 1626458 41 CCGTCCAAGCTGACCTGGAGCTGGAGGGGTTCCCAGGCCAC CCGTCCAAGCTGACCTGGAGCTGAAGGGGTTCCCAGGCCAC < 41bp 0.812615821458025 0.600961692168482 0.69922775 0.52020687 prediction 0.423308258579087 Functional Loss - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1626438 chr8:1626441 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_88386 0 0 0 0 1 DLGAP2 chr8:1626380 3'AG 1626380 Downstream 62bp
chr5 5319212 5319212 1 + C T LUSC 5319209 + 5319189 5319229 41 ATGTGCAGCCACAAGTTCTACGGCAAGCAGTGCTGCAAGAC ATGTGCAGCCACAAGTTCTACGGTAAGCAGTGCTGCAAGAC < 41bp 0.72229196063477 0.510639553010534 0.20375505 0.24645579 prediction 0.423304815248471 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5319209 chr5:5319212 synonymous SNV . 0 24 hm5C_associated_SNPs_88387 0 0 0 0 1 ADAMTS16 chr5:5319136 3'AG 5319136 Downstream 77bp
chr5 79355572 79355572 1 + G A STAD 79355569 + 79355549 79355589 41 ACCCCAAGCACGGTGGTGCCCCCGGCTCCCCCTGCACCGCC ACCCCAAGCACGGTGGTGCCCCCAGCTCCCCCTGCACCGCC < 41bp 0.823796215899491 0.612147124776963 0.124800414 0.32035428 prediction 0.423298182245055 Functional Loss - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79355569 chr5:79355572 synonymous SNV . 0 24 hm5C_associated_SNPs_88390 0 0 0 0 1 THBS4 chr5:79355526 3'AG 79355526 Downstream 47bp
chr10 20019683 20019683 1 + G A rs61743565 20019680 + 20019660 20019700 41 GCCTTTGTCAATCCAGTTTACGGGAACTGGAGCAACCCAGA GCCTTTGTCAATCCAGTTTACGGAAACTGGAGCAACCCAGA < 41bp 0.770046734324619 0.558402856484598 0.8897604 0.5521798 prediction 0.423287755680042 Functional Loss - MALRD1 ENSG00000204740 CDS Human protein_coding chr10:20019680 chr10:20019683 synonymous SNV . 0 24 hm5C_associated_SNPs_88392 0 0 0 0 2 MALRD1 chr10:20019635 3'AG 20019635 Downstream 49bp
chr10 20019683 20019683 1 + G A rs61743565 20019680 + 20019660 20019700 41 GCCTTTGTCAATCCAGTTTACGGGAACTGGAGCAACCCAGA GCCTTTGTCAATCCAGTTTACGGAAACTGGAGCAACCCAGA < 41bp 0.770046734324619 0.558402856484598 0.8897604 0.5521798 prediction 0.423287755680042 Functional Loss - MALRD1 ENSG00000204740 CDS Human protein_coding chr10:20019680 chr10:20019683 synonymous SNV . 0 24 hm5C_associated_SNPs_88392 0 0 0 0 2 MALRD1 chr10:20019710 5'GT 20019710 Upstream 28bp
chr4 71654634 71654634 1 + C T STAD 71654631 + 71654611 71654651 41 AGCAGGATGCCCTGGTATCTCTTCGGCAGCAGCTGGATGAC AGCAGGATGCCCTGGTATCTCTTTGGCAGCAGCTGGATGAC < 41bp 0.711643766022169 0.483071820241112 0.22068807 0.14220771 prediction 0.423287532044338 Functional Loss - RUFY3 ENSG00000018189 CDS Human protein_coding chr4:71654631 chr4:71654634 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_88393 0 0 1 0 1 RUFY3 chr4:71654690 5'GT 71654690 Upstream 57bp
chr20 54970777 54970777 1 + G A UCEC 54970774 + 54970754 54970794 41 AGCTCCTGCATCTCATCAAACTCGGTAGATTGTGAACACAA AGCTCCTGCATCTCATCAAACTCAGTAGATTGTGAACACAA < 41bp 0.795307342804453 0.583667802730424 0.20443323 0.11973694 prediction 0.423279080148057 Functional Loss - CSTF1 ENSG00000101138 CDS Human protein_coding chr20:54970774 chr20:54970777 nonsynonymous SNV 0.916 3 24 hm5C_associated_SNPs_88394 0 0 1 0 1 CSTF1 chr20:54970777 5'GT 54970777 Upstream 1bp
chr3 33419604 33419604 1 + G A UCEC 33419601 + 33419581 33419621 41 GTGGACTCTTCCAGAATTGCCACGAATTGGAGAAGATGGAT GTGGACTCTTCCAGAATTGCCACAAATTGGAGAAGATGGAT < 41bp 0.767283809089705 0.555645995199394 0.12062284 0.20211768 prediction 0.423275627780622 Functional Loss - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33419601 chr3:33419604 nonsynonymous SNV 0.789 1 24 hm5C_associated_SNPs_88396 0 0 1 0 2 FBXL2 chr3:33419595 3'AG 33419595 Downstream 10bp
chr3 33419604 33419604 1 + G A UCEC 33419601 + 33419581 33419621 41 GTGGACTCTTCCAGAATTGCCACGAATTGGAGAAGATGGAT GTGGACTCTTCCAGAATTGCCACAAATTGGAGAAGATGGAT < 41bp 0.767283809089705 0.555645995199394 0.12062284 0.20211768 prediction 0.423275627780622 Functional Loss - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33419601 chr3:33419604 nonsynonymous SNV 0.789 1 24 hm5C_associated_SNPs_88396 0 0 1 0 2 FBXL2 chr3:33419639 5'GT 33419639 Upstream 36bp
chrX 3021840 3021840 1 + C T COAD 3021837 + 3021817 3021857 41 GGGGGCTGGGAAGGTGGAATCCGCGTCCCAGGAATTGTCCG GGGGGCTGGGAAGGTGGAATCCGTGTCCCAGGAATTGTCCG < 41bp 0.711624927820625 0.494197296914397 0.6779368 0.28750512 prediction 0.423249855641249 Functional Loss - ARSF ENSG00000062096 CDS Human protein_coding chrX:3021837 chrX:3021840 synonymous SNV . 0 24 hm5C_associated_SNPs_88408 0 0 0 0 1 ARSF chrX:3021803 3'AG 3021803 Downstream 38bp
chr16 57775612 57775612 1 + G A rs540920595 57775609 + 57775589 57775629 41 CCCTGTGTAGAAGAGATCGTCGCGCATGCCAGCAACGTGTC CCCTGTGTAGAAGAGATCGTCGCACATGCCAGCAACGTGTC < 41bp 0.711623128964633 0.462635321141595 0.1961542 0.13027665 prediction 0.423246257929266 Functional Loss - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57775609 chr16:57775612 synonymous SNV . 0 24 hm5C_associated_SNPs_88409 0 0 1 0 1 KATNB1 chr16:57775599 3'AG 57775599 Downstream 14bp
chr16 57775611 57775611 1 + C T UCEC 57775609 + 57775589 57775629 41 CCCTGTGTAGAAGAGATCGTCGCGCATGCCAGCAACGTGTC CCCTGTGTAGAAGAGATCGTCGTGCATGCCAGCAACGTGTC < 41bp 0.711623128964633 0.449281693305768 0.1961542 0.16544655 prediction 0.423246257929266 Functional Loss - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57775609 chr16:57775611 nonsynonymous SNV 0.959 4 23 hm5C_associated_SNPs_88410 0 0 1 0 1 KATNB1 chr16:57775599 3'AG 57775599 Downstream 13bp
chr12 52307830 52307830 1 + C T LUSC 52307828 + 52307808 52307848 41 CCTGGTGCAGAGGACAGTGGCACGGCAGGTTGCCTTGGTGG CCTGGTGCAGAGGACAGTGGCATGGCAGGTTGCCTTGGTGG < 41bp 0.711617406222355 0.450354060897058 0.31603175 0.40105528 prediction 0.423234812444709 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52307828 chr12:52307830 nonsynonymous SNV 0.980 4 23 hm5C_associated_SNPs_88411 1 0 0 0 2 ACVRL1 chr12:52307758 3'AG 52307758 Downstream 73bp
chr12 52307830 52307830 1 + C T LUSC 52307828 + 52307808 52307848 41 CCTGGTGCAGAGGACAGTGGCACGGCAGGTTGCCTTGGTGG CCTGGTGCAGAGGACAGTGGCATGGCAGGTTGCCTTGGTGG < 41bp 0.711617406222355 0.450354060897058 0.31603175 0.40105528 prediction 0.423234812444709 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52307828 chr12:52307830 nonsynonymous SNV 0.980 4 23 hm5C_associated_SNPs_88411 1 0 0 0 2 ACVRL1 chr12:52307857 5'GT 52307857 Upstream 28bp
chr15 38765742 38765742 1 + G A UCEC 38765739 + 38765719 38765759 41 TCTCAAAGGTCCAGAAAAATCATGTGGGAAAACCACTGCTG TCTCAAAGGTCCAGAAAAATCATATGGGAAAACCACTGCTG < 41bp 0.711615100754837 0.481615040073019 0.50439864 0.24285486 prediction 0.423230201509674 Functional Loss - FAM98B ENSG00000171262 CDS Human protein_coding chr15:38765739 chr15:38765742 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_88414 0 0 1 0 2 FAM98B chr15:38765706 3'AG 38765706 Downstream 37bp
chr15 38765742 38765742 1 + G A UCEC 38765739 + 38765719 38765759 41 TCTCAAAGGTCCAGAAAAATCATGTGGGAAAACCACTGCTG TCTCAAAGGTCCAGAAAAATCATATGGGAAAACCACTGCTG < 41bp 0.711615100754837 0.481615040073019 0.50439864 0.24285486 prediction 0.423230201509674 Functional Loss - FAM98B ENSG00000171262 CDS Human protein_coding chr15:38765739 chr15:38765742 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_88414 0 0 1 0 2 FAM98B chr15:38765786 5'GT 38765786 Upstream 45bp
chr18 61569114 61569114 1 + T C STAD 61569113 + 61569093 61569133 41 CTTTATCCTTTCCGTGTAAACTCGGTATGAGACAACAAAAT CTTTATCCTTTCCGTGTAAACCCGGTATGAGACAACAAAAT < 41bp 0.711614315355289 0.476020370320008 0.12230855 0.3195256 prediction 0.423228630710578 Functional Loss - SERPINB2 ENSG00000197632;ENSG00000242550 CDS Human other chr18:61569113 chr18:61569114 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_88417 0 0 0 0 1 SERPINB2 chr18:61569116 5'GT 61569116 Upstream 3bp
chr18 61569116 61569116 1 + G A THCA 61569113 + 61569093 61569133 41 CTTTATCCTTTCCGTGTAAACTCGGTATGAGACAACAAAAT CTTTATCCTTTCCGTGTAAACTCAGTATGAGACAACAAAAT < 41bp 0.711614315355289 0.493351613086618 0.12230855 0.064162165 prediction 0.423228630710578 Functional Loss - SERPINB2 ENSG00000197632;ENSG00000242550 CDS Human other chr18:61569113 chr18:61569116 synonymous SNV . 0 24 hm5C_associated_SNPs_88418 0 0 0 0 1 SERPINB2 chr18:61569116 5'GT 61569116 Upstream 1bp
chr5 179251239 179251239 1 + G T UCEC 179251237 + 179251217 179251257 41 ACACGGACACTTCGGGTGGCCAGGATGGGAAATGGGTCCAC ACACGGACACTTCGGGTGGCCATGATGGGAAATGGGTCCAC < 41bp 0.914978812782936 0.70336478066322 0.889444 0.69363177 prediction 0.423228064239432 Functional Loss - SQSTM1 ENSG00000161011 CDS Human protein_coding chr5:179251237 chr5:179251239 stopgain 0.997 0 23 hm5C_associated_SNPs_88419 0 0 1 0 2 SQSTM1 chr5:179251182 3'AG 179251182 Downstream 58bp
chr5 179251239 179251239 1 + G T UCEC 179251237 + 179251217 179251257 41 ACACGGACACTTCGGGTGGCCAGGATGGGAAATGGGTCCAC ACACGGACACTTCGGGTGGCCATGATGGGAAATGGGTCCAC < 41bp 0.914978812782936 0.70336478066322 0.889444 0.69363177 prediction 0.423228064239432 Functional Loss - SQSTM1 ENSG00000161011 CDS Human protein_coding chr5:179251237 chr5:179251239 stopgain 0.997 0 23 hm5C_associated_SNPs_88419 0 0 1 0 2 SQSTM1 chr5:179251323 5'GT 179251323 Upstream 85bp
chr15 91328268 91328268 1 + G T SARC 91328265 + 91328245 91328285 41 TGCTGGCCTCAGTGATTCTGCCAGAGATGAAGTGCAGCAGA TGCTGGCCTCAGTGATTCTGCCATAGATGAAGTGCAGCAGA < 41bp 0.711607342677033 0.316601010618695 0.77858204 0.22274482 prediction 0.423214685354066 Functional Loss - BLM ENSG00000197299 CDS Human protein_coding chr15:91328265 chr15:91328268 nonsynonymous SNV 0.984 5 24 hm5C_associated_SNPs_88426 0 0 1 0 1 BLM chr15:91328311 5'GT 91328311 Upstream 44bp
chr2 160050867 160050867 1 + G A BLCA 160050864 + 160050844 160050884 41 GCGTCCAGTCTCACCTTGGCCACGAGGAAGTTGTCACTCTG GCGTCCAGTCTCACCTTGGCCACAAGGAAGTTGTCACTCTG < 41bp 0.786704632516843 0.575105781628002 0.23246977 0.14212543 prediction 0.423197701777681 Functional Loss - TANC1 ENSG00000115183 CDS Human protein_coding chr2:160050864 chr2:160050867 nonsynonymous SNV 0.976 1 24 hm5C_associated_SNPs_88431 0 0 0 0 1 TANC1 chr2:160050768 3'AG 160050768 Downstream 100bp
chr19 52918407 52918407 1 + G A SKCM 52918404 + 52918384 52918424 41 CTCTAAATTGGGAAGTAATGCAGGAAACAAGCCTTGTAAAA CTCTAAATTGGGAAGTAATGCAGAAAACAAGCCTTGTAAAA < 41bp 0.779019196256129 0.567423998077603 0.898279 0.7892785 prediction 0.423190396357051 Functional Loss - ZNF528 ENSG00000167555 CDS Human protein_coding chr19:52918404 chr19:52918407 nonsynonymous SNV 0.029 0 24 hm5C_associated_SNPs_88433 0 0 0 0 1 ZNF528 chr19:52918377 3'AG 52918377 Downstream 31bp
chr3 31666476 31666476 1 + C T UCEC 31666474 + 31666454 31666494 41 GCAAAATACAGATGAACATGCACGAGTAATGTCTTGGTGGG GCAAAATACAGATGAACATGCATGAGTAATGTCTTGGTGGG < 41bp 0.866381288062158 0.65479144924087 0.33209777 0.36279854 prediction 0.423179677642576 Functional Loss - STT3B ENSG00000163527 CDS Human protein_coding chr3:31666474 chr3:31666476 stopgain 0.985 1 23 hm5C_associated_SNPs_88437 0 0 1 0 1 STT3B chr3:31666406 3'AG 31666406 Downstream 71bp
chr11 34130334 34130334 1 + C T BLCA 34130332 + 34130312 34130352 41 ATCCAAAGCAACTGTGAAGGCTCGGCCTTCAGTGCTGTGGT ATCCAAAGCAACTGTGAAGGCTTGGCCTTCAGTGCTGTGGT < 41bp 0.711589465802438 0.430872575069396 0.053594917 0.045967996 prediction 0.423178931604875 Functional Loss - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34130332 chr11:34130334 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_88439 0 0 0 0 2 NAT10 chr11:34130289 3'AG 34130289 Downstream 46bp
chr11 34130334 34130334 1 + C T BLCA 34130332 + 34130312 34130352 41 ATCCAAAGCAACTGTGAAGGCTCGGCCTTCAGTGCTGTGGT ATCCAAAGCAACTGTGAAGGCTTGGCCTTCAGTGCTGTGGT < 41bp 0.711589465802438 0.430872575069396 0.053594917 0.045967996 prediction 0.423178931604875 Functional Loss - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34130332 chr11:34130334 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_88439 0 0 0 0 2 NAT10 chr11:34130380 5'GT 34130380 Upstream 47bp
chr11 34130335 34130335 1 + G A UCEC 34130332 + 34130312 34130352 41 ATCCAAAGCAACTGTGAAGGCTCGGCCTTCAGTGCTGTGGT ATCCAAAGCAACTGTGAAGGCTCAGCCTTCAGTGCTGTGGT < 41bp 0.711589465802438 0.472001328508302 0.053594917 0.027183175 prediction 0.423178931604875 Functional Loss - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34130332 chr11:34130335 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_88440 0 0 0 0 2 NAT10 chr11:34130289 3'AG 34130289 Downstream 47bp
chr11 34130335 34130335 1 + G A UCEC 34130332 + 34130312 34130352 41 ATCCAAAGCAACTGTGAAGGCTCGGCCTTCAGTGCTGTGGT ATCCAAAGCAACTGTGAAGGCTCAGCCTTCAGTGCTGTGGT < 41bp 0.711589465802438 0.472001328508302 0.053594917 0.027183175 prediction 0.423178931604875 Functional Loss - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34130332 chr11:34130335 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_88440 0 0 0 0 2 NAT10 chr11:34130380 5'GT 34130380 Upstream 46bp
chr4 48422361 48422361 1 + C T UCEC 48422358 + 48422338 48422378 41 CAGCGCTACTCTAACCAGACCTGCAGGGACAACTGCAATGA CAGCGCTACTCTAACCAGACCTGTAGGGACAACTGCAATGA < 41bp 0.711588182375705 0.477969328758185 0.13106894 0.111742884 prediction 0.423176364751409 Functional Loss - SLAIN2 ENSG00000109171 CDS Human protein_coding chr4:48422358 chr4:48422361 nonsynonymous SNV 0.848 1 24 hm5C_associated_SNPs_88441 0 0 1 0 1 SLAIN2 chr4:48422460 5'GT 48422460 Upstream 100bp
chr5 147510860 147510860 1 + G A SKCM 147510857 + 147510837 147510877 41 AAAGACTACCGAGTATTGCCCAGGATAGGTTATCTTTGTCC AAAGACTACCGAGTATTGCCCAGAATAGGTTATCTTTGTCC < 41bp 0.711587513695735 0.47545993844441 0.82775104 0.5190566 prediction 0.423175027391471 Functional Loss - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147510857 chr5:147510860 synonymous SNV . 0 24 hm5C_associated_SNPs_88442 0 0 0 0 2 SPINK5 chr5:147510822 3'AG 147510822 Downstream 39bp
chr5 147510860 147510860 1 + G A SKCM 147510857 + 147510837 147510877 41 AAAGACTACCGAGTATTGCCCAGGATAGGTTATCTTTGTCC AAAGACTACCGAGTATTGCCCAGAATAGGTTATCTTTGTCC < 41bp 0.711587513695735 0.47545993844441 0.82775104 0.5190566 prediction 0.423175027391471 Functional Loss - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147510857 chr5:147510860 synonymous SNV . 0 24 hm5C_associated_SNPs_88442 0 0 0 0 2 SPINK5 chr5:147510952 5'GT 147510952 Upstream 93bp
chr5 96245370 96245370 1 + G A UCEC 96245367 + 96245347 96245387 41 GTCTGGGACAGGATGCTCCGCTCGGCTCTCTTGAAGCTGGC GTCTGGGACAGGATGCTCCGCTCAGCTCTCTTGAAGCTGGC < 41bp 0.711584788818544 0.470659155815852 0.109625995 0.116074204 prediction 0.423169577637088 Functional Loss - ERAP2 ENSG00000164308 CDS Human protein_coding chr5:96245367 chr5:96245370 synonymous SNV . 0 24 hm5C_associated_SNPs_88444 0 0 0 0 1 ERAP2 chr5:96245468 5'GT 96245468 Upstream 99bp
chr12 58002346 58002346 1 + G T UCEC 58002343 + 58002323 58002363 41 AGTTCGGTATCCTGGCACCACACGGGTGGCCTACCTCCCGG AGTTCGGTATCCTGGCACCACACTGGTGGCCTACCTCCCGG < 41bp 0.939108069229076 0.727526355519749 0.9099183 0.7962393 prediction 0.423163427418654 Functional Loss - DTX3 ENSG00000178498 CDS Human protein_coding chr12:58002343 chr12:58002346 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_88448 0 0 1 0 1 DTX3 chr12:58002303 3'AG 58002303 Downstream 44bp
chr1 47279949 47279949 1 + A T LUAD 47279945 + 47279925 47279965 41 GTGCGGAAGAAGATCCAGAACCGGAGGCACCTGGACTTCCT GTGCGGAAGAAGATCCAGAACCGGTGGCACCTGGACTTCCT < 41bp 0.894783801002679 0.683202693010687 0.91604584 0.38444299 prediction 0.423162215983984 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47279945 chr1:47279949 nonsynonymous SNV 0.863 4 25 hm5C_associated_SNPs_88449 0 0 0 0 1 CYP4B1 chr1:47279881 3'AG 47279881 Downstream 69bp
chr17 8222860 8222860 1 + G T UCEC 8222857 + 8222837 8222877 41 TCAGAGTCGTCTGCACCTGCCAAGACTGAAGGACGGAGTCT TCAGAGTCGTCTGCACCTGCCAATACTGAAGGACGGAGTCT < 41bp 0.711579132528831 0.305871054922086 0.16101298 0.09277722 prediction 0.423158265057661 Functional Loss - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8222857 chr17:8222860 nonsynonymous SNV 0.270 2 24 hm5C_associated_SNPs_88453 0 0 0 0 2 ARHGEF15 chr17:8222817 3'AG 8222817 Downstream 44bp
chr17 8222860 8222860 1 + G T UCEC 8222857 + 8222837 8222877 41 TCAGAGTCGTCTGCACCTGCCAAGACTGAAGGACGGAGTCT TCAGAGTCGTCTGCACCTGCCAATACTGAAGGACGGAGTCT < 41bp 0.711579132528831 0.305871054922086 0.16101298 0.09277722 prediction 0.423158265057661 Functional Loss - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8222857 chr17:8222860 nonsynonymous SNV 0.270 2 24 hm5C_associated_SNPs_88453 0 0 0 0 2 ARHGEF15 chr17:8222921 5'GT 8222921 Upstream 62bp
chr1 202531968 202531968 1 + G A rs150829491 202531965 + 202531945 202531985 41 TTACGGTGACCGGGCTTCAGCAAGAGCCCGTCGGGAGGCCC TTACGGTGACCGGGCTTCAGCAAAAGCCCGTCGGGAGGCCC < 41bp 0.80855819884808 0.59697938637413 0.74742275 0.35741132 prediction 0.423157624947901 Functional Loss - PPP1R12B ENSG00000077157 CDS Human protein_coding chr1:202531965 chr1:202531968 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_88454 0 0 1 0 2 PPP1R12B chr1:202531906 3'AG 202531906 Downstream 63bp
chr1 202531968 202531968 1 + G A rs150829491 202531965 + 202531945 202531985 41 TTACGGTGACCGGGCTTCAGCAAGAGCCCGTCGGGAGGCCC TTACGGTGACCGGGCTTCAGCAAAAGCCCGTCGGGAGGCCC < 41bp 0.80855819884808 0.59697938637413 0.74742275 0.35741132 prediction 0.423157624947901 Functional Loss - PPP1R12B ENSG00000077157 CDS Human protein_coding chr1:202531965 chr1:202531968 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_88454 0 0 1 0 2 PPP1R12B chr1:202532050 5'GT 202532050 Upstream 83bp
chr2 10917808 10917808 1 + G A rs117054621 10917805 + 10917785 10917825 41 TAACCCTGATAGGCCTGCTGCGGGGCAGACCGACAGAGAGA TAACCCTGATAGGCCTGCTGCGGAGCAGACCGACAGAGAGA < 41bp 0.711575399144834 0.464000802185564 0.8425939 0.4006221 prediction 0.423150798289667 Functional Loss - ATP6V1C2 ENSG00000143882 CDS Human protein_coding chr2:10917805 chr2:10917808 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_88457 0 0 0 0 2 ATP6V1C2 chr2:10917711 3'AG 10917711 Downstream 98bp
chr2 10917808 10917808 1 + G A rs117054621 10917805 + 10917785 10917825 41 TAACCCTGATAGGCCTGCTGCGGGGCAGACCGACAGAGAGA TAACCCTGATAGGCCTGCTGCGGAGCAGACCGACAGAGAGA < 41bp 0.711575399144834 0.464000802185564 0.8425939 0.4006221 prediction 0.423150798289667 Functional Loss - ATP6V1C2 ENSG00000143882 CDS Human protein_coding chr2:10917805 chr2:10917808 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_88457 0 0 0 0 2 ATP6V1C2 chr2:10917848 5'GT 10917848 Upstream 41bp
chr1 154215707 154215707 1 + G A UCEC 154215704 + 154215684 154215724 41 GTTTTCCAGCTTTCTGAGACCAAGATCTTCACTGCCTCTAA GTTTTCCAGCTTTCTGAGACCAAAATCTTCACTGCCTCTAA < 41bp 0.782959255305521 0.571384113112791 0.15684557 0.10780442 prediction 0.42315028438546 Functional Loss - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154215704 chr1:154215707 synonymous SNV . 0 24 hm5C_associated_SNPs_88458 0 0 1 0 1 UBAP2L chr1:154215693 3'AG 154215693 Downstream 15bp
chr1 43042758 43042758 1 + C T SKCM 43042756 + 43042736 43042776 41 ACAAAGATGTGCTCTTCACTCACGGCAGAGTACAAGCACTG ACAAAGATGTGCTCTTCACTCATGGCAGAGTACAAGCACTG < 41bp 0.711572804087796 0.431887907246143 0.4375174 0.7046115 prediction 0.423145608175592 Functional Loss - CCDC30 ENSG00000186409 CDS Human protein_coding chr1:43042756 chr1:43042758 nonsynonymous SNV 0.668 0 23 hm5C_associated_SNPs_88460 0 0 0 1 1 CCDC30 chr1:43042691 3'AG 43042691 Downstream 68bp
chr1 43042759 43042759 1 + G A STAD 43042756 + 43042736 43042776 41 ACAAAGATGTGCTCTTCACTCACGGCAGAGTACAAGCACTG ACAAAGATGTGCTCTTCACTCACAGCAGAGTACAAGCACTG < 41bp 0.711572804087796 0.479881420971621 0.4375174 0.10741061 prediction 0.423145608175592 Functional Loss - CCDC30 ENSG00000186409 CDS Human protein_coding chr1:43042756 chr1:43042759 synonymous SNV . 0 24 hm5C_associated_SNPs_88461 0 0 0 2 1 CCDC30 chr1:43042691 3'AG 43042691 Downstream 69bp
chr7 134925394 134925394 1 + C T STAD 134925391 + 134925371 134925411 41 GACGGCTGTCCCAGGCCCGCCACCGAGCCACCCTGGCAGCG GACGGCTGTCCCAGGCCCGCCACTGAGCCACCCTGGCAGCG < 41bp 0.711572583301027 0.494600233727432 0.23970896 0.56026334 prediction 0.423145166602054 Functional Loss - STRA8 ENSG00000146857 CDS Human protein_coding chr7:134925391 chr7:134925394 stopgain 1.000 1 24 hm5C_associated_SNPs_88462 0 0 0 0 1 STRA8 chr7:134925468 5'GT 134925468 Upstream 75bp
chr20 1285595 1285595 1 + C T UCEC 1285592 + 1285572 1285612 41 ACTGGATTGAGGAGGAGTGCCACCGCGTGGAGGCCCAGCTG ACTGGATTGAGGAGGAGTGCCACTGCGTGGAGGCCCAGCTG < 41bp 0.711571710671866 0.492475687298174 0.23886564 0.2722529 prediction 0.423143421343731 Functional Loss - SNPH ENSG00000101298 CDS Human protein_coding chr20:1285592 chr20:1285595 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_88463 0 0 0 0 1 SNPH chr20:1285522 3'AG 1285522 Downstream 74bp
chr5 175740726 175740726 1 + G T ESCA 175740724 + 175740704 175740744 41 TGCCTGGGCGAGTCCTTTTCCTGCGTTATGTCGTTCAGACC TGCCTGGGCGAGTCCTTTTCCTTCGTTATGTCGTTCAGACC < 41bp 0.711571661179381 0.388812309065331 0.27778876 0.1344704 prediction 0.423143322358762 Functional Loss - SIMC1 ENSG00000170085 CDS Human protein_coding chr5:175740724 chr5:175740726 synonymous SNV . 0 23 hm5C_associated_SNPs_88464 0 0 1 0 1 SIMC1 chr5:175740694 3'AG 175740694 Downstream 33bp
chr2 73470219 73470219 1 + C T SKCM 73470216 + 73470196 73470236 41 ATGTGGAGGAAGGTTTACACCCCCAGATCATCATTCGAGCT ATGTGGAGGAAGGTTTACACCCCTAGATCATCATTCGAGCT < 41bp 0.762140748473626 0.550570566557122 0.05203998 0.052658975 prediction 0.423140363833007 Functional Loss - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73470216 chr2:73470219 stopgain 0.998 1 24 hm5C_associated_SNPs_88465 0 0 1 0 3 CCT7 chr2:73470132 3'AG 73470132 Downstream 88bp
chr2 73470219 73470219 1 + C T SKCM 73470216 + 73470196 73470236 41 ATGTGGAGGAAGGTTTACACCCCCAGATCATCATTCGAGCT ATGTGGAGGAAGGTTTACACCCCTAGATCATCATTCGAGCT < 41bp 0.762140748473626 0.550570566557122 0.05203998 0.052658975 prediction 0.423140363833007 Functional Loss - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73470216 chr2:73470219 stopgain 0.998 1 24 hm5C_associated_SNPs_88465 0 0 1 0 3 CCT7 chr2:73470174 3'AG 73470174 Downstream 46bp
chr2 73470219 73470219 1 + C T SKCM 73470216 + 73470196 73470236 41 ATGTGGAGGAAGGTTTACACCCCCAGATCATCATTCGAGCT ATGTGGAGGAAGGTTTACACCCCTAGATCATCATTCGAGCT < 41bp 0.762140748473626 0.550570566557122 0.05203998 0.052658975 prediction 0.423140363833007 Functional Loss - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73470216 chr2:73470219 stopgain 0.998 1 24 hm5C_associated_SNPs_88465 0 0 1 0 3 CCT7 chr2:73470257 5'GT 73470257 Upstream 39bp
chr1 46806527 46806527 1 + G T UCEC 46806525 + 46806505 46806545 41 GCGCTGACACTGAGGGGTGTCCGGGAGCTGCTGAAGCGTGT GCGCTGACACTGAGGGGTGTCCTGGAGCTGCTGAAGCGTGT < 41bp 0.711566407091899 0.360615018424981 0.9036988 0.36195356 prediction 0.423132814183798 Functional Loss - NSUN4 ENSG00000117481 CDS Human protein_coding chr1:46806525 chr1:46806527 nonsynonymous SNV 0.791 1 23 hm5C_associated_SNPs_88469 0 0 1 0 1 NSUN4 chr1:46806591 5'GT 46806591 Upstream 65bp
chr7 135330313 135330313 1 + G A BLCA 135330310 + 135330290 135330330 41 TCTCAAGATTCCTTATTTGCCTCGAGAACCTTGTTTAAAAG TCTCAAGATTCCTTATTTGCCTCAAGAACCTTGTTTAAAAG < 41bp 0.711565056066951 0.493782923379513 0.16833994 0.026159763 prediction 0.423130112133901 Functional Loss - NUP205 ENSG00000155561 CDS Human protein_coding chr7:135330310 chr7:135330313 synonymous SNV . 0 24 hm5C_associated_SNPs_88471 0 0 1 0 2 NUP205 chr7:135330216 3'AG 135330216 Downstream 98bp
chr7 135330313 135330313 1 + G A BLCA 135330310 + 135330290 135330330 41 TCTCAAGATTCCTTATTTGCCTCGAGAACCTTGTTTAAAAG TCTCAAGATTCCTTATTTGCCTCAAGAACCTTGTTTAAAAG < 41bp 0.711565056066951 0.493782923379513 0.16833994 0.026159763 prediction 0.423130112133901 Functional Loss - NUP205 ENSG00000155561 CDS Human protein_coding chr7:135330310 chr7:135330313 synonymous SNV . 0 24 hm5C_associated_SNPs_88471 0 0 1 0 2 NUP205 chr7:135330344 5'GT 135330344 Upstream 32bp
chr17 72480219 72480219 1 + G A UCEC 72480216 + 72480196 72480236 41 CAGGATAGCTGCTCAGAGGCCTCGGGAGGAGGAACCAGATT CAGGATAGCTGCTCAGAGGCCTCAGGAGGAGGAACCAGATT < 41bp 0.711562815066678 0.469882129449766 0.34710515 0.35932994 prediction 0.423125630133356 Functional Loss - CD300A ENSG00000167851 CDS Human protein_coding chr17:72480216 chr17:72480219 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_88475 0 0 0 0 1 CD300A chr17:72480140 3'AG 72480140 Downstream 80bp
chr5 1232420 1232420 1 + C T LUSC 1232417 + 1232397 1232437 41 AGCTCGCCATCGGCCAGCGGCTGCGGAAGGGCAGCGTCGGC AGCTCGCCATCGGCCAGCGGCTGTGGAAGGGCAGCGTCGGC < 41bp 0.715531281504654 0.503974450834819 0.7131234 0.39275485 prediction 0.42311366133967 Functional Loss - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1232417 chr5:1232420 nonsynonymous SNV 0.058 4 24 hm5C_associated_SNPs_88480 0 0 1 0 2 SLC6A18 chr5:1232334 3'AG 1232334 Downstream 87bp
chr5 1232420 1232420 1 + C T LUSC 1232417 + 1232397 1232437 41 AGCTCGCCATCGGCCAGCGGCTGCGGAAGGGCAGCGTCGGC AGCTCGCCATCGGCCAGCGGCTGTGGAAGGGCAGCGTCGGC < 41bp 0.715531281504654 0.503974450834819 0.7131234 0.39275485 prediction 0.42311366133967 Functional Loss - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1232417 chr5:1232420 nonsynonymous SNV 0.058 4 24 hm5C_associated_SNPs_88480 0 0 1 0 2 SLC6A18 chr5:1232474 5'GT 1232474 Upstream 55bp
chr12 117271695 117271695 1 + C T SKCM 117271692 + 117271672 117271712 41 TACATCATGGGTGACGACTCCTCCAACAGCTACTTCCTGGG TACATCATGGGTGACGACTCCTCTAACAGCTACTTCCTGGG < 41bp 0.783168074350339 0.5716116757581 0.956309 0.9398159 prediction 0.423112797184477 Functional Loss - RNFT2 ENSG00000135119 CDS Human protein_coding chr12:117271692 chr12:117271695 synonymous SNV . 0 24 hm5C_associated_SNPs_88481 0 0 0 0 2 RNFT2 chr12:117271597 3'AG 117271597 Downstream 99bp
chr12 117271695 117271695 1 + C T SKCM 117271692 + 117271672 117271712 41 TACATCATGGGTGACGACTCCTCCAACAGCTACTTCCTGGG TACATCATGGGTGACGACTCCTCTAACAGCTACTTCCTGGG < 41bp 0.783168074350339 0.5716116757581 0.956309 0.9398159 prediction 0.423112797184477 Functional Loss - RNFT2 ENSG00000135119 CDS Human protein_coding chr12:117271692 chr12:117271695 synonymous SNV . 0 24 hm5C_associated_SNPs_88481 0 0 0 0 2 RNFT2 chr12:117271746 5'GT 117271746 Upstream 52bp
chr11 61503268 61503268 1 + G A UCEC 61503265 + 61503245 61503285 41 GCCTCCCCGTGGAGGGGCACCACGGCACCTGGCTGGGCCAC GCCTCCCCGTGGAGGGGCACCACAGCACCTGGCTGGGCCAC < 41bp 0.819686374106146 0.608132850176204 0.22743618 0.3145201 prediction 0.423107047859884 Functional Loss - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503265 chr11:61503268 nonsynonymous SNV 0.795 3 24 hm5C_associated_SNPs_88482 0 0 1 0 2 DAGLA chr11:61503211 3'AG 61503211 Downstream 58bp
chr11 61503268 61503268 1 + G A UCEC 61503265 + 61503245 61503285 41 GCCTCCCCGTGGAGGGGCACCACGGCACCTGGCTGGGCCAC GCCTCCCCGTGGAGGGGCACCACAGCACCTGGCTGGGCCAC < 41bp 0.819686374106146 0.608132850176204 0.22743618 0.3145201 prediction 0.423107047859884 Functional Loss - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503265 chr11:61503268 nonsynonymous SNV 0.795 3 24 hm5C_associated_SNPs_88482 0 0 1 0 2 DAGLA chr11:61503288 5'GT 61503288 Upstream 21bp
chr9 127616546 127616546 1 + C T UCEC 127616543 + 127616523 127616563 41 CTCACAGGCTCAGAAGATGGCTGCGTGTATGGCTGGGAGAC CTCACAGGCTCAGAAGATGGCTGTGTGTATGGCTGGGAGAC < 41bp 0.713262285041695 0.501709928824643 0.397072 0.26902652 prediction 0.423104712434104 Functional Loss - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127616543 chr9:127616546 synonymous SNV 0.971 0 24 hm5C_associated_SNPs_88484 0 0 0 0 3 WDR38 chr9:127616484 3'AG 127616484 Downstream 63bp
chr9 127616546 127616546 1 + C T UCEC 127616543 + 127616523 127616563 41 CTCACAGGCTCAGAAGATGGCTGCGTGTATGGCTGGGAGAC CTCACAGGCTCAGAAGATGGCTGTGTGTATGGCTGGGAGAC < 41bp 0.713262285041695 0.501709928824643 0.397072 0.26902652 prediction 0.423104712434104 Functional Loss - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127616543 chr9:127616546 synonymous SNV 0.971 0 24 hm5C_associated_SNPs_88484 0 0 0 0 3 WDR38 chr9:127616517 3'AG 127616517 Downstream 30bp
chr9 127616546 127616546 1 + C T UCEC 127616543 + 127616523 127616563 41 CTCACAGGCTCAGAAGATGGCTGCGTGTATGGCTGGGAGAC CTCACAGGCTCAGAAGATGGCTGTGTGTATGGCTGGGAGAC < 41bp 0.713262285041695 0.501709928824643 0.397072 0.26902652 prediction 0.423104712434104 Functional Loss - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127616543 chr9:127616546 synonymous SNV 0.971 0 24 hm5C_associated_SNPs_88484 0 0 0 0 3 WDR38 chr9:127616604 5'GT 127616604 Upstream 59bp
chr2 98928431 98928431 1 + C T LUSC 98928429 + 98928409 98928449 41 CAGCAGGCGGCGCCCTCGGACTCGGACGGCTCCTCCCACGG CAGCAGGCGGCGCCCTCGGACTTGGACGGCTCCTCCCACGG < 41bp 0.785318998329709 0.573768653270666 0.13302967 0.17118919 prediction 0.423100690118085 Functional Loss - VWA3B ENSG00000168658 CDS Human protein_coding chr2:98928429 chr2:98928431 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_88486 0 0 0 0 1 VWA3B chr2:98928464 5'GT 98928464 Upstream 34bp
chr5 147498055 147498055 1 + G A SKCM 147498052 + 147498032 147498072 41 AAATGGAAGACTCAGCTGTACTCGGGAGAGTGATCCTGTAC AAATGGAAGACTCAGCTGTACTCAGGAGAGTGATCCTGTAC < 41bp 0.793880112003221 0.582333940714887 0.32629067 0.11015332 prediction 0.423092342576669 Functional Loss - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147498052 chr5:147498055 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_88489 0 0 0 0 2 SPINK5 chr5:147498000 3'AG 147498000 Downstream 56bp
chr5 147498055 147498055 1 + G A SKCM 147498052 + 147498032 147498072 41 AAATGGAAGACTCAGCTGTACTCGGGAGAGTGATCCTGTAC AAATGGAAGACTCAGCTGTACTCAGGAGAGTGATCCTGTAC < 41bp 0.793880112003221 0.582333940714887 0.32629067 0.11015332 prediction 0.423092342576669 Functional Loss - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147498052 chr5:147498055 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_88489 0 0 0 0 2 SPINK5 chr5:147498127 5'GT 147498127 Upstream 73bp
chr9 138557549 138557549 1 + C T OV 138557546 + 138557526 138557566 41 CTGAGCAGATTTGAAGAAACCTGCGAAAAGTACGGACTTGG CTGAGCAGATTTGAAGAAACCTGTGAAAAGTACGGACTTGG < 41bp 0.711545449395721 0.495399732815783 0.21425086 0.25560135 prediction 0.423090898791442 Functional Loss - LCN9 ENSG00000148386 CDS Human protein_coding chr9:138557546 chr9:138557549 synonymous SNV . 0 24 hm5C_associated_SNPs_88490 0 0 0 0 2 LCN9 chr9:138557542 3'AG 138557542 Downstream 8bp
chr9 138557549 138557549 1 + C T OV 138557546 + 138557526 138557566 41 CTGAGCAGATTTGAAGAAACCTGCGAAAAGTACGGACTTGG CTGAGCAGATTTGAAGAAACCTGTGAAAAGTACGGACTTGG < 41bp 0.711545449395721 0.495399732815783 0.21425086 0.25560135 prediction 0.423090898791442 Functional Loss - LCN9 ENSG00000148386 CDS Human protein_coding chr9:138557546 chr9:138557549 synonymous SNV . 0 24 hm5C_associated_SNPs_88490 0 0 0 0 2 LCN9 chr9:138557598 5'GT 138557598 Upstream 50bp
chr11 123448201 123448201 1 + G A UCEC 123448198 + 123448178 123448218 41 GAGAAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCAC GAGAAGGGCTCAGATCACTCCTCAGACAAGTCCCCGTCCAC < 41bp 0.812244152817913 0.600700677249614 0.37115583 0.259184 prediction 0.423086951136599 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123448198 chr11:123448201 synonymous SNV . 0 24 hm5C_associated_SNPs_88495 0 0 0 0 1 GRAMD1B chr11:123448285 5'GT 123448285 Upstream 85bp
chr5 2755233 2755233 1 + G A BLCA 2755230 + 2755210 2755250 41 GAGCGCGAGGAACAGCCGGCCCCGGAGGCTCGGGCTCGGGG GAGCGCGAGGAACAGCCGGCCCCAGAGGCTCGGGCTCGGGG < 41bp 0.711542287194712 0.472051016299474 0.6826879 0.29225326 prediction 0.423084574389423 Functional Loss - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2755230 chr5:2755233 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_88496 0 0 0 0 1 C5orf38 chr5:2755143 3'AG 2755143 Downstream 91bp
chr5 2755234 2755234 1 + G C UCS 2755230 + 2755210 2755250 41 GAGCGCGAGGAACAGCCGGCCCCGGAGGCTCGGGCTCGGGG GAGCGCGAGGAACAGCCGGCCCCGCAGGCTCGGGCTCGGGG < 41bp 0.711542287194712 0.429469134240493 0.6826879 0.14880046 prediction 0.423084574389423 Functional Loss - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2755230 chr5:2755234 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_88497 0 0 0 0 1 C5orf38 chr5:2755143 3'AG 2755143 Downstream 92bp
chr1 50659567 50659567 1 + G A SKCM 50659564 + 50659544 50659584 41 ATACGGCCGTATCATCACCTCACGAATCCTGGTTGATCAAG ATACGGCCGTATCATCACCTCACAAATCCTGGTTGATCAAG < 41bp 0.781788310724777 0.570248992361478 0.08434075 0.034857064 prediction 0.423078636726599 Functional Loss - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50659564 chr1:50659567 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_88498 0 0 0 0 1 ELAVL4 chr1:50659590 5'GT 50659590 Upstream 24bp
chr1 78309068 78309068 1 + G T LUSC 78309065 + 78309045 78309085 41 GACACCTTGAGCATCGCATCCACGGATTCCTTTGCTTCCGC GACACCTTGAGCATCGCATCCACTGATTCCTTTGCTTCCGC < 41bp 0.711538975734874 0.319625922795269 0.21987489 0.07023969 prediction 0.423077951469749 Functional Loss - MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78309065 chr1:78309068 synonymous SNV . 0 24 hm5C_associated_SNPs_88499 0 0 1 0 2 MIGA1 chr1:78308992 3'AG 78308992 Downstream 77bp
chr1 78309068 78309068 1 + G T LUSC 78309065 + 78309045 78309085 41 GACACCTTGAGCATCGCATCCACGGATTCCTTTGCTTCCGC GACACCTTGAGCATCGCATCCACTGATTCCTTTGCTTCCGC < 41bp 0.711538975734874 0.319625922795269 0.21987489 0.07023969 prediction 0.423077951469749 Functional Loss - MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78309065 chr1:78309068 synonymous SNV . 0 24 hm5C_associated_SNPs_88499 0 0 1 0 2 MIGA1 chr1:78309092 5'GT 78309092 Upstream 25bp
chr1 78309067 78309067 1 + C T UCEC 78309065 + 78309045 78309085 41 GACACCTTGAGCATCGCATCCACGGATTCCTTTGCTTCCGC GACACCTTGAGCATCGCATCCATGGATTCCTTTGCTTCCGC < 41bp 0.711538975734874 0.426730365859294 0.21987489 0.20487076 prediction 0.423077951469749 Functional Loss - MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78309065 chr1:78309067 nonsynonymous SNV 0.020 2 23 hm5C_associated_SNPs_88500 0 0 1 0 2 MIGA1 chr1:78308992 3'AG 78308992 Downstream 76bp
chr1 78309067 78309067 1 + C T UCEC 78309065 + 78309045 78309085 41 GACACCTTGAGCATCGCATCCACGGATTCCTTTGCTTCCGC GACACCTTGAGCATCGCATCCATGGATTCCTTTGCTTCCGC < 41bp 0.711538975734874 0.426730365859294 0.21987489 0.20487076 prediction 0.423077951469749 Functional Loss - MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78309065 chr1:78309067 nonsynonymous SNV 0.020 2 23 hm5C_associated_SNPs_88500 0 0 1 0 2 MIGA1 chr1:78309092 5'GT 78309092 Upstream 26bp
chr10 18242390 18242390 1 + G A COAD 18242387 + 18242367 18242407 41 CCACCCACCCCACAACCACTCAAGAAGCCTCATCAAAACAT CCACCCACCCCACAACCACTCAAAAAGCCTCATCAAAACAT < 41bp 0.79117684108163 0.579638351182695 0.50225663 0.18437952 prediction 0.423076979797869 Functional Loss - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18242387 chr10:18242390 nonsynonymous SNV 0.452 0 24 hm5C_associated_SNPs_88501 0 0 0 0 1 SLC39A12 chr10:18242466 5'GT 18242466 Upstream 77bp
chr5 161117348 161117348 1 + G T UCEC 161117345 + 161117325 161117365 41 TAATAAGGAGTCCGTCCCAGCAAGAACTGTTTTTGGTATAT TAATAAGGAGTCCGTCCCAGCAATAACTGTTTTTGGTATAT < 41bp 0.711533534079601 0.331679548965257 0.36028105 0.061271757 prediction 0.423067068159202 Functional Loss - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161117345 chr5:161117348 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_88505 0 0 0 0 1 GABRA6 chr5:161117359 5'GT 161117359 Upstream 12bp
chr2 74682700 74682700 1 + G A LUAD 74682697 + 74682677 74682717 41 AGCTCAAACTCAAAATCAAGCTTGGGGGACAAGTCCTGGGG AGCTCAAACTCAAAATCAAGCTTAGGGGACAAGTCCTGGGG < 41bp 0.711532535436252 0.468713955540097 0.09840119 0.046494424 prediction 0.423065070872503 Functional Loss - INO80B ENSG00000115274 CDS Human protein_coding chr2:74682697 chr2:74682700 nonsynonymous SNV 0.947 4 24 hm5C_associated_SNPs_88506 0 0 1 0 1 INO80B chr2:74682725 5'GT 74682725 Upstream 26bp
chr20 55100882 55100882 1 - G A UCEC 55100884 - 55100864 55100904 41 TGGAGAGTGAAGTTGGCCGCCTCGAAGGCCAGGAGGACTCT TGGAGAGTGAAGTTGGCCGCCTTGAAGGCCAGGAGGACTCT < 41bp 0.840422253662712 0.628893078208326 0.70853335 0.101955146 prediction 0.423058350908772 Functional Loss - FAM209A ENSG00000124103 CDS Human protein_coding chr20:55100884 chr20:55100882 nonsynonymous SNV 0.054 0 23 hm5C_associated_SNPs_88509 0 0 0 0 1 GCNT7 chr20:55100839 5'GT 55100839 Upstream 44bp
chr19 48953774 48953774 1 + C T LUAD 48953772 + 48953752 48953792 41 CTTTGCCCTTGACTGGTCCCCCCGGGTGACCGGTGAGTCCC CTTTGCCCTTGACTGGTCCCCCTGGGTGACCGGTGAGTCCC < 41bp 0.711525581278823 0.44443902308729 0.83006454 0.79642093 prediction 0.423051162557647 Functional Loss - GRWD1 ENSG00000105447 CDS Human protein_coding chr19:48953772 chr19:48953774 nonsynonymous SNV 0.409 1 23 hm5C_associated_SNPs_88510 0 0 1 0 1 GRWD1 chr19:48953783 5'GT 48953783 Upstream 10bp
chr5 122181316 122181316 1 + G T rs369577100 122181314 + 122181294 122181334 41 CCCAACTCGCCCTCAGCCGGCTGGCCGGCGCGGCCATGGAG CCCAACTCGCCCTCAGCCGGCTTGCCGGCGCGGCCATGGAG < 41bp 0.711523739379743 0.448375268739743 0.21194407 0.16201067 prediction 0.423047478759487 Functional Loss - SNX24 ENSG00000064652 UTR5 Human protein_coding chr5:122181314 chr5:122181316 . . 0 23 hm5C_associated_SNPs_88511 0 0 1 0 1 SNX24 chr5:122181388 5'GT 122181388 Upstream 73bp
chr10 44142610 44142610 1 + A C rs189432402 44142606 + 44142586 44142626 41 CTTGCTGTGACTTTGAACTCCTGGACTCAACGGATCCTCCC CTTGCTGTGACTTTGAACTCCTGGCCTCAACGGATCCTCCC < 41bp 0.711522722508502 0.337820055556239 0.028647453 0.023013443 prediction 0.423045445017005 Functional Loss - ZNF32-AS2 ENSG00000230565 ncRNA_exonic Human antisense chr10:44142606 chr10:44142610 . . 0 25 hm5C_associated_SNPs_88512 0 0 0 0 2 ZNF32-AS2 chr10:44142560 3'AG 44142560 Downstream 51bp
chr10 44142610 44142610 1 + A C rs189432402 44142606 + 44142586 44142626 41 CTTGCTGTGACTTTGAACTCCTGGACTCAACGGATCCTCCC CTTGCTGTGACTTTGAACTCCTGGCCTCAACGGATCCTCCC < 41bp 0.711522722508502 0.337820055556239 0.028647453 0.023013443 prediction 0.423045445017005 Functional Loss - ZNF32-AS2 ENSG00000230565 ncRNA_exonic Human antisense chr10:44142606 chr10:44142610 . . 0 25 hm5C_associated_SNPs_88512 0 0 0 0 2 ZNF32-AS2 chr10:44142657 5'GT 44142657 Upstream 48bp
chr10 8051290 8051290 1 + C T CESC 8051287 + 8051267 8051307 41 GTGACTGAGACGGTCAGCACCTACGTGGTGCGTACCTGCCG GTGACTGAGACGGTCAGCACCTATGTGGTGCGTACCTGCCG < 41bp 0.714249369998871 0.502728915672223 0.111846626 0.044789314 prediction 0.423040908653296 Functional Loss - TAF3 ENSG00000165632 CDS Human protein_coding chr10:8051287 chr10:8051290 synonymous SNV . 0 24 hm5C_associated_SNPs_88515 0 0 1 0 1 TAF3 chr10:8051293 5'GT 8051293 Upstream 4bp
chr19 10790603 10790603 1 + G T LUAD 10790601 + 10790581 10790621 41 GGCGTCGGGCATCGTGATGCCAGGTTGGGGCCTTGTGCTTT GGCGTCGGGCATCGTGATGCCATGTTGGGGCCTTGTGCTTT < 41bp 0.711516690329623 0.363883172357979 0.8517057 0.28441864 prediction 0.423033380659246 Functional Loss - ILF3 ENSG00000129351 CDS Human protein_coding chr19:10790601 chr19:10790603 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_88517 0 0 1 0 1 ILF3 chr19:10790603 5'GT 10790603 Upstream 1bp
chr3 44771203 44771203 1 + G C rs111348900 44771199 + 44771179 44771219 41 GGGGAGCGCCGCGGGGAGCGCCGCGGGAAGCGCATGGTGAG GGGGAGCGCCGCGGGGAGCGCCGCCGGAAGCGCATGGTGAG < 41bp 0.866635270337516 0.655118619814712 0.58247274 0.37804762 prediction 0.423033301045606 Functional Loss - ZNF501 ENSG00000186446 UTR5 Human protein_coding chr3:44771199 chr3:44771203 . . 0 25 hm5C_associated_SNPs_88518 0 0 0 0 1 ZNF501 chr3:44771214 5'GT 44771214 Upstream 12bp
chr14 76548655 76548655 1 + G A SKCM 76548652 + 76548632 76548672 41 TTGCAGATATTCCTATCATTCCGGATCTGGAGGAAGTACAG TTGCAGATATTCCTATCATTCCGAATCTGGAGGAAGTACAG < 41bp 0.791297508316815 0.57978293265732 0.38375464 0.17681706 prediction 0.42302915131899 Functional Loss - IFT43 ENSG00000119650 CDS Human protein_coding chr14:76548652 chr14:76548655 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_88519 0 0 0 1 2 IFT43 chr14:76548638 3'AG 76548638 Downstream 18bp
chr14 76548655 76548655 1 + G A SKCM 76548652 + 76548632 76548672 41 TTGCAGATATTCCTATCATTCCGGATCTGGAGGAAGTACAG TTGCAGATATTCCTATCATTCCGAATCTGGAGGAAGTACAG < 41bp 0.791297508316815 0.57978293265732 0.38375464 0.17681706 prediction 0.42302915131899 Functional Loss - IFT43 ENSG00000119650 CDS Human protein_coding chr14:76548652 chr14:76548655 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_88519 0 0 0 1 2 IFT43 chr14:76548710 5'GT 76548710 Upstream 56bp
chr11 65388375 65388375 1 + C T THYM 65388372 + 65388352 65388392 41 CTACAGGCGGCCTGAACCTGCTGCAGCCGAGGCCTGTGGTT CTACAGGCGGCCTGAACCTGCTGTAGCCGAGGCCTGTGGTT < 41bp 0.714773718881437 0.503261819260029 0.366848 0.31948143 prediction 0.423023799242816 Functional Loss - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65388372 chr11:65388375 stopgain 0.997 0 24 hm5C_associated_SNPs_88521 0 0 1 0 2 PCNX3 chr11:65388302 3'AG 65388302 Downstream 74bp
chr11 65388375 65388375 1 + C T THYM 65388372 + 65388352 65388392 41 CTACAGGCGGCCTGAACCTGCTGCAGCCGAGGCCTGTGGTT CTACAGGCGGCCTGAACCTGCTGTAGCCGAGGCCTGTGGTT < 41bp 0.714773718881437 0.503261819260029 0.366848 0.31948143 prediction 0.423023799242816 Functional Loss - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65388372 chr11:65388375 stopgain 0.997 0 24 hm5C_associated_SNPs_88521 0 0 1 0 2 PCNX3 chr11:65388437 5'GT 65388437 Upstream 63bp
chr16 84883096 84883096 1 + G T ACC 84883093 + 84883073 84883113 41 CCCTGGTGTCCAGAGAGGTGCTCGGGGCCCATGTGCACGCA CCCTGGTGTCCAGAGAGGTGCTCTGGGCCCATGTGCACGCA < 41bp 0.711507125435828 0.311284426089601 0.866347 0.48149508 prediction 0.423014250871657 Functional Loss - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84883093 chr16:84883096 synonymous SNV . 0 24 hm5C_associated_SNPs_88523 0 0 0 0 1 CRISPLD2 chr16:84883123 5'GT 84883123 Upstream 28bp
chr7 152134053 152134053 1 + G A rs116959477 152134050 + 152134030 152134070 41 GGTTCTCGCCGAGGTCTTTCCTCGTAGCGCCCACACTACGG GGTTCTCGCCGAGGTCTTTCCTCATAGCGCCCACACTACGG < 41bp 0.790702463875295 0.579198990230599 0.8843953 0.45976144 prediction 0.423006947289392 Functional Loss - FABP5P3 ENSG00000241735 ncRNA_exonic Human transcribed_processed_pseudogene chr7:152134050 chr7:152134053 . . 0 24 hm5C_associated_SNPs_88526 0 0 0 0 1 FABP5P3 chr7:152134113 5'GT 152134113 Upstream 61bp
chr17 2808645 2808645 1 + G T UCEC 2808641 + 2808621 2808661 41 CGGCCGCTCTCCCCTCCTCTCACGGCACCTCCCACCATGAA CGGCCGCTCTCCCCTCCTCTCACGTCACCTCCCACCATGAA < 41bp 0.737886429816359 0.526384683832173 0.6663451 0.07302296 prediction 0.423003491968371 Functional Loss - RAP1GAP2 ENSG00000132359 CDS Human protein_coding chr17:2808641 chr17:2808645 nonsynonymous SNV 0.424 2 25 hm5C_associated_SNPs_88528 0 0 0 0 2 RAP1GAP2 chr17:2808578 3'AG 2808578 Downstream 68bp
chr17 2808645 2808645 1 + G T UCEC 2808641 + 2808621 2808661 41 CGGCCGCTCTCCCCTCCTCTCACGGCACCTCCCACCATGAA CGGCCGCTCTCCCCTCCTCTCACGTCACCTCCCACCATGAA < 41bp 0.737886429816359 0.526384683832173 0.6663451 0.07302296 prediction 0.423003491968371 Functional Loss - RAP1GAP2 ENSG00000132359 CDS Human protein_coding chr17:2808641 chr17:2808645 nonsynonymous SNV 0.424 2 25 hm5C_associated_SNPs_88528 0 0 0 0 2 RAP1GAP2 chr17:2808662 5'GT 2808662 Upstream 18bp
chrX 77301812 77301812 1 + G A BLCA 77301809 + 77301789 77301829 41 AGTTACAGGAAACCAACTTACGAGAGTTATGAACTGCCTGC AGTTACAGGAAACCAACTTACGAAAGTTATGAACTGCCTGC < 41bp 0.740939437486698 0.52943830572792 0.89378047 0.548149 prediction 0.423002263517555 Functional Loss - ATP7A ENSG00000165240 CDS Human protein_coding chrX:77301809 chrX:77301812 synonymous SNV . 0 24 hm5C_associated_SNPs_88530 0 0 1 0 1 ATP7A chrX:77301791 3'AG 77301791 Downstream 22bp
chr19 3738920 3738920 1 + C T COAD 3738918 + 3738898 3738938 41 TCTGGAAAATGGTGCAGTCCCGCGTGGGTGACTCCTTCTAC TCTGGAAAATGGTGCAGTCCCGTGTGGGTGACTCCTTCTAC < 41bp 0.84117471829825 0.629673693683024 0.1131888 0.11406508 prediction 0.423002049230452 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3738918 chr19:3738920 synonymous SNV . 0 23 hm5C_associated_SNPs_88531 0 0 0 0 1 TJP3 chr19:3738895 3'AG 3738895 Downstream 26bp
chr15 38234401 38234401 1 + G A SKCM 38234398 + 38234378 38234418 41 GTTTCTCTTTGAAGAAGTACCAGGAAACGTTGAAGAAAATA GTTTCTCTTTGAAGAAGTACCAGAAAACGTTGAAGAAAATA < 41bp 0.711499948126 0.498921639865897 0.55072594 0.25248557 prediction 0.422999896251999 Functional Loss - TMCO5A ENSG00000166069 CDS Human protein_coding chr15:38234398 chr15:38234401 nonsynonymous SNV 0.943 4 24 hm5C_associated_SNPs_88532 0 0 0 0 1 TMCO5A chr15:38234392 3'AG 38234392 Downstream 10bp
chr5 132084084 132084084 1 + C T BLCA 132084081 + 132084061 132084101 41 AGGAAGTCGTGCTGTGGCTCCTGCGGCTTCAGAACACCTTT AGGAAGTCGTGCTGTGGCTCCTGTGGCTTCAGAACACCTTT < 41bp 0.71870060996693 0.507200834866595 0.39667168 0.20566177 prediction 0.42299955020067 Functional Loss - CCNI2 ENSG00000205089 CDS Human protein_coding chr5:132084081 chr5:132084084 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_88533 0 0 0 0 3 CCNI2 chr5:132084036 3'AG 132084036 Downstream 49bp
chr5 132084084 132084084 1 + C T BLCA 132084081 + 132084061 132084101 41 AGGAAGTCGTGCTGTGGCTCCTGCGGCTTCAGAACACCTTT AGGAAGTCGTGCTGTGGCTCCTGTGGCTTCAGAACACCTTT < 41bp 0.71870060996693 0.507200834866595 0.39667168 0.20566177 prediction 0.42299955020067 Functional Loss - CCNI2 ENSG00000205089 CDS Human protein_coding chr5:132084081 chr5:132084084 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_88533 0 0 0 0 3 CCNI2 chr5:132084039 3'AG 132084039 Downstream 46bp
chr5 132084084 132084084 1 + C T BLCA 132084081 + 132084061 132084101 41 AGGAAGTCGTGCTGTGGCTCCTGCGGCTTCAGAACACCTTT AGGAAGTCGTGCTGTGGCTCCTGTGGCTTCAGAACACCTTT < 41bp 0.71870060996693 0.507200834866595 0.39667168 0.20566177 prediction 0.42299955020067 Functional Loss - CCNI2 ENSG00000205089 CDS Human protein_coding chr5:132084081 chr5:132084084 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_88533 0 0 0 0 3 CCNI2 chr5:132084167 5'GT 132084167 Upstream 84bp
chr3 40231348 40231348 1 + G A UCEC 40231345 + 40231325 40231365 41 CCAGTTTTGCAGAGCCCCGACGGGAACTGGGTGGCCCTGAA CCAGTTTTGCAGAGCCCCGACGGAAACTGGGTGGCCCTGAA < 41bp 0.783465621663622 0.571968876616436 0.7158764 0.45692933 prediction 0.422993490094372 Functional Loss - MYRIP ENSG00000170011 CDS Human protein_coding chr3:40231345 chr3:40231348 synonymous SNV . 0 24 hm5C_associated_SNPs_88536 0 0 0 0 1 MYRIP chr3:40231317 3'AG 40231317 Downstream 32bp
chr1 160057293 160057293 1 + C T UCEC 160057291 + 160057271 160057311 41 CCCAGGAATGACATGCCAAGCTCGGAGCTCCTACCTGGTAG CCCAGGAATGACATGCCAAGCTTGGAGCTCCTACCTGGTAG < 41bp 0.828472397868689 0.616977471285059 0.35623544 0.31174123 prediction 0.422989853167261 Functional Loss - KCNJ9 ENSG00000162728 CDS Human protein_coding chr1:160057291 chr1:160057293 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_88537 0 0 0 0 1 KCNJ9 chr1:160057276 3'AG 160057276 Downstream 18bp
chr9 138557718 138557718 1 + T C ESCA 138557717 + 138557697 138557737 41 GTCCTTCCAGATCCCTGCTACTCCAAGCATTACAGGAGCCC GTCCTTCCAGATCCCTGCTACCCCAAGCATTACAGGAGCCC < 41bp 0.711492698739662 0.446920214168915 0.9414152 0.037062913 prediction 0.422985397479324 Functional Loss - LCN9 ENSG00000148386 CDS Human protein_coding chr9:138557717 chr9:138557718 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_88540 0 0 0 0 1 LCN9 chr9:138557707 3'AG 138557707 Downstream 12bp
chr1 156849833 156849833 1 + G C COAD 156849832 + 156849812 156849852 41 CCCATTCGCTGGATGCCGCCCGAGAGCATCCTGTACCGTAA CCCATTCGCTGGATGCCGCCCCAGAGCATCCTGTACCGTAA < 41bp 0.895467110714568 0.683974857698798 0.65957296 0.4259295 prediction 0.422984506031541 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156849832 chr1:156849833 nonsynonymous SNV 0.984 5 22 hm5C_associated_SNPs_88541 0 0 1 0 1 NTRK1 chr1:156849791 3'AG 156849791 Downstream 43bp
chr9 100823237 100823237 1 + C T rs563649207 100823234 + 100823214 100823254 41 TACAGGGAGCTGCAGAGGTACGCCGAGGAGGTTGGGATCTT TACAGGGAGCTGCAGAGGTACGCTGAGGAGGTTGGGATCTT < 41bp 0.711490124593227 0.499940291817686 0.48263928 0.6315106 prediction 0.422980249186455 Functional Loss - NANS ENSG00000095380 CDS Human protein_coding chr9:100823234 chr9:100823237 synonymous SNV . 0 24 hm5C_associated_SNPs_88543 0 0 1 0 1 NANS chr9:100823279 5'GT 100823279 Upstream 43bp
chr2 73476217 73476217 1 + C T LUAD 73476214 + 73476194 73476234 41 AAAGTTGTCTTGTCCAAACTCCCCATTGGGGATGTGGCCAC AAAGTTGTCTTGTCCAAACTCCCTATTGGGGATGTGGCCAC < 41bp 0.802084542998341 0.590598997015421 0.15584326 0.107696235 prediction 0.42297109196584 Functional Loss - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73476214 chr2:73476217 synonymous SNV . 0 24 hm5C_associated_SNPs_88544 0 0 1 0 2 CCT7 chr2:73476119 3'AG 73476119 Downstream 99bp
chr2 73476217 73476217 1 + C T LUAD 73476214 + 73476194 73476234 41 AAAGTTGTCTTGTCCAAACTCCCCATTGGGGATGTGGCCAC AAAGTTGTCTTGTCCAAACTCCCTATTGGGGATGTGGCCAC < 41bp 0.802084542998341 0.590598997015421 0.15584326 0.107696235 prediction 0.42297109196584 Functional Loss - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73476214 chr2:73476217 synonymous SNV . 0 24 hm5C_associated_SNPs_88544 0 0 1 0 2 CCT7 chr2:73476307 5'GT 73476307 Upstream 91bp
chr14 20978663 20978663 1 + G A LUSC 20978660 + 20978640 20978680 41 AATCTGGTGCAGATCTTTTTCATGTTGCTGATGCTGCTGCT AATCTGGTGCAGATCTTTTTCATATTGCTGATGCTGCTGCT < 41bp 0.711479493557159 0.471829192803777 0.22033149 0.21802095 prediction 0.422958987114318 Functional Loss - RNASE10 ENSG00000182545 CDS Human protein_coding chr14:20978660 chr14:20978663 nonsynonymous SNV 0.684 0 24 hm5C_associated_SNPs_88546 0 0 0 0 1 RNASE10 chr14:20978626 3'AG 20978626 Downstream 38bp
chr7 128586057 128586057 1 + C T UCEC 128586054 + 128586034 128586074 41 CCACCTCAGCCCTACAAGATCTACGAGGTCTGCTCCAATGG CCACCTCAGCCCTACAAGATCTATGAGGTCTGCTCCAATGG < 41bp 0.71147621645717 0.495611183625734 0.21200845 0.37065178 prediction 0.42295243291434 Functional Loss - IRF5 ENSG00000128604 CDS Human protein_coding chr7:128586054 chr7:128586057 synonymous SNV . 0 24 hm5C_associated_SNPs_88550 0 0 0 0 2 IRF5 chr7:128586060 5'GT 128586060 Upstream 4bp
chr7 128586057 128586057 1 + C T UCEC 128586054 + 128586034 128586074 41 CCACCTCAGCCCTACAAGATCTACGAGGTCTGCTCCAATGG CCACCTCAGCCCTACAAGATCTATGAGGTCTGCTCCAATGG < 41bp 0.71147621645717 0.495611183625734 0.21200845 0.37065178 prediction 0.42295243291434 Functional Loss - IRF5 ENSG00000128604 CDS Human protein_coding chr7:128586054 chr7:128586057 synonymous SNV . 0 24 hm5C_associated_SNPs_88550 0 0 0 0 2 IRF5 chr7:128586088 5'GT 128586088 Upstream 32bp
chr5 177020677 177020677 1 + C T UCEC 177020674 + 177020654 177020694 41 ATCCTGGCCCGGCAGTATGGCTCCGAGGGCAGGTTCACTTT ATCCTGGCCCGGCAGTATGGCTCTGAGGGCAGGTTCACTTT < 41bp 0.755358665799656 0.54388461152314 0.31603545 0.22130975 prediction 0.422948108553032 Functional Loss - TMED9 ENSG00000184840 CDS Human protein_coding chr5:177020674 chr5:177020677 synonymous SNV . 0 24 hm5C_associated_SNPs_88552 0 0 1 0 2 TMED9 chr5:177020651 3'AG 177020651 Downstream 27bp
chr5 177020677 177020677 1 + C T UCEC 177020674 + 177020654 177020694 41 ATCCTGGCCCGGCAGTATGGCTCCGAGGGCAGGTTCACTTT ATCCTGGCCCGGCAGTATGGCTCTGAGGGCAGGTTCACTTT < 41bp 0.755358665799656 0.54388461152314 0.31603545 0.22130975 prediction 0.422948108553032 Functional Loss - TMED9 ENSG00000184840 CDS Human protein_coding chr5:177020674 chr5:177020677 synonymous SNV . 0 24 hm5C_associated_SNPs_88552 0 0 1 0 2 TMED9 chr5:177020776 5'GT 177020776 Upstream 100bp
chr11 114167333 114167333 1 + G A SKCM 114167330 + 114167310 114167350 41 ATCTAAGCCATTTTAACCCTCGGGATTACCTAGAAAAATAT ATCTAAGCCATTTTAACCCTCGGAATTACCTAGAAAAATAT < 41bp 0.711474040272054 0.473058967215699 0.87100405 0.36285734 prediction 0.422948080544107 Functional Loss - NNMT ENSG00000166741 CDS Human protein_coding chr11:114167330 chr11:114167333 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_88553 0 0 0 0 1 NNMT chr11:114167432 5'GT 114167432 Upstream 100bp
chr11 114167334 114167334 1 + A C UCEC 114167330 + 114167310 114167350 41 ATCTAAGCCATTTTAACCCTCGGGATTACCTAGAAAAATAT ATCTAAGCCATTTTAACCCTCGGGCTTACCTAGAAAAATAT < 41bp 0.711474040272054 0.313171713678391 0.87100405 0.84719753 prediction 0.422948080544107 Functional Loss - NNMT ENSG00000166741 CDS Human protein_coding chr11:114167330 chr11:114167334 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_88554 0 0 0 0 1 NNMT chr11:114167432 5'GT 114167432 Upstream 99bp
chr14 65521297 65521297 1 + C T STAD 65521295 + 65521275 65521315 41 AGCTGCCTGTCCTTACAGGTCGCGTGATTTCTACCACACCT AGCTGCCTGTCCTTACAGGTCGTGTGATTTCTACCACACCT < 41bp 0.71147374417978 0.447828259798252 0.31785884 0.39880997 prediction 0.42294748835956 Functional Loss - CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65521295 chr14:65521297 nonsynonymous SNV 0.391 4 23 hm5C_associated_SNPs_88555 0 0 0 0 1 CHURC1-FNTB;FNTB chr14:65521293 3'AG 65521293 Downstream 5bp
chr11 60739374 60739374 1 + G T UCEC 60739372 + 60739352 60739392 41 CGGGATCACTGGATTGCTGACGGCAGCCCTCTCAGGTAGGC CGGGATCACTGGATTGCTGACGTCAGCCCTCTCAGGTAGGC < 41bp 0.711472694726337 0.359859726671784 0.4325186 0.28988612 prediction 0.422945389452674 Functional Loss - CD6 ENSG00000013725 CDS Human protein_coding chr11:60739372 chr11:60739374 nonsynonymous SNV 0.056 1 23 hm5C_associated_SNPs_88557 0 0 0 0 1 CD6 chr11:60739386 5'GT 60739386 Upstream 13bp
chr2 231249970 231249970 1 + G A HNSC 231249967 + 231249947 231249987 41 AAAGCCGATGGCCAGCTGGTCTCGAGTGAAAAGAAGGCGAA AAAGCCGATGGCCAGCTGGTCTCAAGTGAAAAGAAGGCGAA < 41bp 0.804680379651613 0.593208294956153 0.71221775 0.3728656 prediction 0.42294416939092 Functional Loss - SP140L ENSG00000185404 CDS Human protein_coding chr2:231249967 chr2:231249970 synonymous SNV . 0 24 hm5C_associated_SNPs_88560 0 0 1 0 2 SP140L chr2:231249939 3'AG 231249939 Downstream 32bp
chr2 231249970 231249970 1 + G A HNSC 231249967 + 231249947 231249987 41 AAAGCCGATGGCCAGCTGGTCTCGAGTGAAAAGAAGGCGAA AAAGCCGATGGCCAGCTGGTCTCAAGTGAAAAGAAGGCGAA < 41bp 0.804680379651613 0.593208294956153 0.71221775 0.3728656 prediction 0.42294416939092 Functional Loss - SP140L ENSG00000185404 CDS Human protein_coding chr2:231249967 chr2:231249970 synonymous SNV . 0 24 hm5C_associated_SNPs_88560 0 0 1 0 2 SP140L chr2:231250019 5'GT 231250019 Upstream 50bp
chr3 38350542 38350542 1 + C T rs115112284 38350539 + 38350519 38350559 41 GTGTTGCTGACAGGGATCGCCTACAGTCTTCCCCACTGGCA GTGTTGCTGACAGGGATCGCCTATAGTCTTCCCCACTGGCA < 41bp 0.735353892629044 0.523884138941971 0.8739003 0.25307906 prediction 0.422939507374146 Functional Loss - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38350539 chr3:38350542 synonymous SNV . 0 24 hm5C_associated_SNPs_88562 0 0 0 3 3 SLC22A14 chr3:38350445 3'AG 38350445 Downstream 98bp
chr3 38350542 38350542 1 + C T rs115112284 38350539 + 38350519 38350559 41 GTGTTGCTGACAGGGATCGCCTACAGTCTTCCCCACTGGCA GTGTTGCTGACAGGGATCGCCTATAGTCTTCCCCACTGGCA < 41bp 0.735353892629044 0.523884138941971 0.8739003 0.25307906 prediction 0.422939507374146 Functional Loss - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38350539 chr3:38350542 synonymous SNV . 0 24 hm5C_associated_SNPs_88562 0 0 0 3 3 SLC22A14 chr3:38350572 5'GT 38350572 Upstream 31bp
chr3 38350542 38350542 1 + C T rs115112284 38350539 + 38350519 38350559 41 GTGTTGCTGACAGGGATCGCCTACAGTCTTCCCCACTGGCA GTGTTGCTGACAGGGATCGCCTATAGTCTTCCCCACTGGCA < 41bp 0.735353892629044 0.523884138941971 0.8739003 0.25307906 prediction 0.422939507374146 Functional Loss - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38350539 chr3:38350542 synonymous SNV . 0 24 hm5C_associated_SNPs_88562 0 0 0 3 3 SLC22A14 chr3:38350613 5'GT 38350613 Upstream 72bp
chr3 50255426 50255426 1 + G T LUSC 50255423 + 50255403 50255443 41 CTGCCCATCTATACTGAGCTCAAGGAGTAGGTGTCTGTGGC CTGCCCATCTATACTGAGCTCAATGAGTAGGTGTCTGTGGC < 41bp 0.711468294772178 0.323427039850954 0.90394497 0.28527266 prediction 0.422936589544357 Functional Loss - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50255423 chr3:50255426 . 1.000 0 24 hm5C_associated_SNPs_88564 0 0 1 0 2 SLC38A3 chr3:50255349 3'AG 50255349 Downstream 78bp
chr3 50255426 50255426 1 + G T LUSC 50255423 + 50255403 50255443 41 CTGCCCATCTATACTGAGCTCAAGGAGTAGGTGTCTGTGGC CTGCCCATCTATACTGAGCTCAATGAGTAGGTGTCTGTGGC < 41bp 0.711468294772178 0.323427039850954 0.90394497 0.28527266 prediction 0.422936589544357 Functional Loss - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50255423 chr3:50255426 . 1.000 0 24 hm5C_associated_SNPs_88564 0 0 1 0 2 SLC38A3 chr3:50255428 5'GT 50255428 Upstream 3bp
chr4 81207571 81207571 1 + A C GBM 81207570 + 81207550 81207590 41 AATACATAGAACTGAAAAAACAGGGCGGGAGTGGTATGTGG AATACATAGAACTGAAAAAACCGGGCGGGAGTGGTATGTGG < 41bp 0.819750158348352 0.608282054113532 0.45757747 0.2339806 prediction 0.422936208469641 Functional Loss - FGF5 ENSG00000138675 CDS Human protein_coding chr4:81207570 chr4:81207571 synonymous SNV . 0 22 hm5C_associated_SNPs_88565 0 0 0 0 1 FGF5 chr4:81207479 3'AG 81207479 Downstream 93bp
chr7 31617488 31617488 1 + C T UCEC 31617485 + 31617465 31617505 41 TGTGTTGTGCAGGTCGTTTCCGACAGCTGGAAATCCTGGAC TGTGTTGTGCAGGTCGTTTCCGATAGCTGGAAATCCTGGAC < 41bp 0.747568620459556 0.536101236492271 0.80517375 0.46475688 prediction 0.422934767934569 Functional Loss - CCDC129 ENSG00000180347 CDS Human protein_coding chr7:31617485 chr7:31617488 stopgain 0.891 0 24 hm5C_associated_SNPs_88567 0 0 0 0 1 CCDC129 chr7:31617477 3'AG 31617477 Downstream 12bp
chr15 22850952 22850952 1 + G A UCEC 22850949 + 22850929 22850969 41 AGTGGTGGACAAGTTGGCACCTCGATTGTCTCAGCTCAAGG AGTGGTGGACAAGTTGGCACCTCAATTGTCTCAGCTCAAGG < 41bp 0.785729371400568 0.574262757496249 0.8264415 0.65339446 prediction 0.422933227808638 Functional Loss - TUBGCP5 ENSG00000153575 CDS Human other chr15:22850949 chr15:22850952 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_88569 0 0 1 0 1 TUBGCP5 chr15:22850907 3'AG 22850907 Downstream 46bp
chr17 40766301 40766301 1 + G A UCEC 40766298 + 40766278 40766318 41 GTGGCCAGCGTGAGGAAGACCACGGTCCTGGATGTCATGAG GTGGCCAGCGTGAGGAAGACCACAGTCCTGGATGTCATGAG < 41bp 0.806944692254896 0.595478339251654 0.8396869 0.44594494 prediction 0.422932706006484 Functional Loss - TUBG1 ENSG00000131462 CDS Human protein_coding chr17:40766298 chr17:40766301 synonymous SNV . 0 24 hm5C_associated_SNPs_88570 0 0 1 0 1 TUBG1 chr17:40766278 3'AG 40766278 Downstream 24bp
chr12 56113310 56113310 1 + C T COAD 56113308 + 56113288 56113328 41 TGGGGATGTGGAGAACTGGGCTCGGAGCATCGAGCTGGACA TGGGGATGTGGAGAACTGGGCTTGGAGCATCGAGCTGGACA < 41bp 0.711463408517675 0.449369467452374 0.51462054 0.4621653 prediction 0.422926817035351 Functional Loss - BLOC1S1 ENSG00000135441 CDS Human protein_coding chr12:56113308 chr12:56113310 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_88574 0 0 1 1 1 BLOC1S1 chr12:56113283 3'AG 56113283 Downstream 28bp
chr6 76623953 76623953 1 + C T PAAD 76623950 + 76623930 76623970 41 TTGATGGACCATGGATTGCCCGGCAAATGGAACTCCATCCT TTGATGGACCATGGATTGCCCGGTAAATGGAACTCCATCCT < 41bp 0.741872957164336 0.530411518062217 0.31748742 0.28961533 prediction 0.422922878204237 Functional Loss - MYO6 ENSG00000196586 CDS Human protein_coding chr6:76623950 chr6:76623953 stopgain 0.996 1 24 hm5C_associated_SNPs_88575 0 0 1 0 1 MYO6 chr6:76623998 5'GT 76623998 Upstream 46bp
chr20 42885823 42885823 1 + G A rs61737147 42885820 + 42885800 42885840 41 TGGTGATCGCCGAGAAGGGCCTGGTGTGCGAGGAGCGGGAC TGGTGATCGCCGAGAAGGGCCTGATGTGCGAGGAGCGGGAC < 41bp 0.798462935998582 0.587001783608853 0.33726364 0.294849 prediction 0.422922304779459 Functional Loss - GDAP1L1 ENSG00000124194 CDS Human protein_coding chr20:42885820 chr20:42885823 nonsynonymous SNV 0.802 0 24 hm5C_associated_SNPs_88576 0 0 0 0 1 GDAP1L1 chr20:42885793 3'AG 42885793 Downstream 31bp
chr4 79522708 79522708 1 + C T LGG 79522705 + 79522685 79522725 41 CGGCCTTTTTAGCCGAAAGACTGCATCGAGCCTTGAAGGTT CGGCCTTTTTAGCCGAAAGACTGTATCGAGCCTTGAAGGTT < 41bp 0.770796952025759 0.559343748474592 0.058714062 0.010882944 prediction 0.422906407102333 Functional Loss - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79522705 chr4:79522708 nonsynonymous SNV 0.885 0 24 hm5C_associated_SNPs_88579 0 0 0 0 2 ANXA3 chr4:79522664 3'AG 79522664 Downstream 45bp
chr4 79522708 79522708 1 + C T LGG 79522705 + 79522685 79522725 41 CGGCCTTTTTAGCCGAAAGACTGCATCGAGCCTTGAAGGTT CGGCCTTTTTAGCCGAAAGACTGTATCGAGCCTTGAAGGTT < 41bp 0.770796952025759 0.559343748474592 0.058714062 0.010882944 prediction 0.422906407102333 Functional Loss - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79522705 chr4:79522708 nonsynonymous SNV 0.885 0 24 hm5C_associated_SNPs_88579 0 0 0 0 2 ANXA3 chr4:79522722 5'GT 79522722 Upstream 15bp
chr2 232577559 232577559 1 + T C CESC 232577558 + 232577538 232577578 41 CAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAA CAGAAGACCGACGAGGATGACCAGACAGCAAAAAAGGAAAA < 41bp 0.711453145048101 0.465102354316715 0.15961435 0.33511373 prediction 0.422906290096202 Functional Loss - PTMA ENSG00000187514 CDS Human protein_coding chr2:232577558 chr2:232577559 stoploss 1.000 0 22 hm5C_associated_SNPs_88580 0 0 1 2 1 PTMA chr2:232577514 3'AG 232577514 Downstream 46bp
chr17 7341760 7341760 1 + G A rs181573353 7341757 + 7341737 7341777 41 GTCCGGGACGCCTAGCCGGGCGTGGGGGGAAGCTCCGTTTG GTCCGGGACGCCTAGCCGGGCGTAGGGGGAAGCTCCGTTTG < 41bp 0.711450832276097 0.476189099901202 0.89904976 0.8766383 prediction 0.422901664552193 Functional Loss - FGF11;TMEM102 ENSG00000262880 ncRNA_intronic Human processed_transcript chr17:7341757 chr17:7341760 . . 0 24 hm5C_associated_SNPs_88581 0 0 0 0 1 FGF11;TMEM102 chr17:7341849 5'GT 7341849 Upstream 90bp
chr7 98988663 98988663 1 + C T rs117071116 98988661 + 98988641 98988681 41 GTTTCTCAGCCAGCGGGAGCCGCGTGGCCTGGGTAAGCCAC GTTTCTCAGCCAGCGGGAGCCGTGTGGCCTGGGTAAGCCAC < 41bp 0.848163590846427 0.636716007502692 0.7416979 0.5076564 prediction 0.422895166687472 Functional Loss - ARPC1B ENSG00000130429 CDS Human protein_coding chr7:98988661 chr7:98988663 synonymous SNV . 0 23 hm5C_associated_SNPs_88583 0 0 1 0 1 ARPC1B chr7:98988722 5'GT 98988722 Upstream 60bp
chr10 105143101 105143101 1 + C T BRCA 105143098 + 105143078 105143118 41 TATGGTCACAGTGGGCCTGTCTACGGAGCCAGCTTCAGTCC TATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCC < 41bp 0.71144665807517 0.483947211324872 0.20390359 0.24133474 prediction 0.42289331615034 Functional Loss - TAF5 ENSG00000148835 CDS Human protein_coding chr10:105143098 chr10:105143101 synonymous SNV . 0 24 hm5C_associated_SNPs_88584 0 0 1 0 1 TAF5 chr10:105143124 5'GT 105143124 Upstream 24bp
chr11 57563960 57563960 1 + G A READ 57563957 + 57563937 57563977 41 AGTAGTGAAGACTGTGACAACACGGACAGTACAGCCAGTCG AGTAGTGAAGACTGTGACAACACAGACAGTACAGCCAGTCG < 41bp 0.763279012975699 0.55183251524388 0.31415647 0.041562498 prediction 0.422892995463638 Functional Loss - CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57563957 chr11:57563960 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_88585 0 0 1 0 1 CTNND1 chr11:57563929 3'AG 57563929 Downstream 32bp
chr5 150827301 150827301 1 + G A rs56859579 150827298 + 150827278 150827318 41 CCGAGCAGTGAGTTCCTCCACTGGCTGCCGGCTGGCGGCGC CCGAGCAGTGAGTTCCTCCACTGACTGCCGGCTGGCGGCGC < 41bp 0.711587632444978 0.500143246794283 0.051247895 0.049824595 prediction 0.422888771301391 Functional Loss - SLC36A1 ENSG00000123643 UTR5 Human protein_coding chr5:150827298 chr5:150827301 . . 0 24 hm5C_associated_SNPs_88588 0 0 1 0 1 SLC36A1 chr5:150827374 5'GT 150827374 Upstream 74bp
chr18 21095895 21095895 1 + G A STAD 21095892 + 21095872 21095912 41 TGAATTGGTACATGTACTGCCCCGAGAGCGCCGTGATCTTG TGAATTGGTACATGTACTGCCCCAAGAGCGCCGTGATCTTG < 41bp 0.711443626585661 0.467131606990917 0.0763095 0.10448936 prediction 0.422887253171322 Functional Loss - C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21095892 chr18:21095895 nonsynonymous SNV 0.964 1 24 hm5C_associated_SNPs_88589 0 0 0 0 1 C18orf8 chr18:21095820 3'AG 21095820 Downstream 76bp
chr4 90849068 90849068 1 + G A SKCM 90849065 + 90849045 90849085 41 TAAGGAACACTTACTCCTCCCTAGAAGGAAAAGTCAGCGAA TAAGGAACACTTACTCCTCCCTAAAAGGAAAAGTCAGCGAA < 41bp 0.742990783516122 0.531547885909987 0.058440864 0.01111573 prediction 0.422885795212269 Functional Loss - MMRN1 ENSG00000138722 CDS Human protein_coding chr4:90849065 chr4:90849068 nonsynonymous SNV 0.779 3 24 hm5C_associated_SNPs_88590 0 0 0 0 1 MMRN1 chr4:90849119 5'GT 90849119 Upstream 52bp
chr3 50220414 50220414 1 + G A ESCA 50220411 + 50220391 50220431 41 GCGCGGCTCGTCTGCTCTGTCCCGGGCGAGGATGGCATTGA GCGCGGCTCGTCTGCTCTGTCCCAGGCGAGGATGGCATTGA < 41bp 0.711442045242235 0.458427776064351 0.30734438 0.054754287 prediction 0.422884090484471 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50220411 chr3:50220414 synonymous SNV . 0 24 hm5C_associated_SNPs_88591 0 0 0 0 2 SEMA3F chr3:50220337 3'AG 50220337 Downstream 78bp
chr3 50220414 50220414 1 + G A ESCA 50220411 + 50220391 50220431 41 GCGCGGCTCGTCTGCTCTGTCCCGGGCGAGGATGGCATTGA GCGCGGCTCGTCTGCTCTGTCCCAGGCGAGGATGGCATTGA < 41bp 0.711442045242235 0.458427776064351 0.30734438 0.054754287 prediction 0.422884090484471 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50220411 chr3:50220414 synonymous SNV . 0 24 hm5C_associated_SNPs_88591 0 0 0 0 2 SEMA3F chr3:50220451 5'GT 50220451 Upstream 38bp
chr3 50220413 50220413 1 + C T OV 50220411 + 50220391 50220431 41 GCGCGGCTCGTCTGCTCTGTCCCGGGCGAGGATGGCATTGA GCGCGGCTCGTCTGCTCTGTCCTGGGCGAGGATGGCATTGA < 41bp 0.711442045242235 0.435818994206156 0.30734438 0.42603782 prediction 0.422884090484471 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50220411 chr3:50220413 nonsynonymous SNV 0.826 2 23 hm5C_associated_SNPs_88592 0 0 0 0 2 SEMA3F chr3:50220337 3'AG 50220337 Downstream 77bp
chr3 50220413 50220413 1 + C T OV 50220411 + 50220391 50220431 41 GCGCGGCTCGTCTGCTCTGTCCCGGGCGAGGATGGCATTGA GCGCGGCTCGTCTGCTCTGTCCTGGGCGAGGATGGCATTGA < 41bp 0.711442045242235 0.435818994206156 0.30734438 0.42603782 prediction 0.422884090484471 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50220411 chr3:50220413 nonsynonymous SNV 0.826 2 23 hm5C_associated_SNPs_88592 0 0 0 0 2 SEMA3F chr3:50220451 5'GT 50220451 Upstream 39bp
chr3 129810214 129810214 1 + G A COAD 129810211 + 129810191 129810231 41 CACGCACTCTCCGTTCAGGGCCCGGTAGGCCTCCCACCCTC CACGCACTCTCCGTTCAGGGCCCAGTAGGCCTCCCACCCTC < 41bp 0.71143868724178 0.471474730817191 0.5932704 0.4263566 prediction 0.422877374483561 Functional Loss - ALG1L2 ENSG00000251287 ncRNA_exonic Human protein_coding chr3:129810211 chr3:129810214 . 0.097 0 24 hm5C_associated_SNPs_88596 0 0 0 0 1 ALG1L2 chr3:129810214 5'GT 129810214 Upstream 1bp
chr19 18054154 18054154 1 + G A OV 18054151 + 18054131 18054171 41 GGAGGAGGGCAGCGTGGAGGCGCGCACCATCGAGGACGCCA GGAGGAGGGCAGCGTGGAGGCGCACACCATCGAGGACGCCA < 41bp 0.796870114299094 0.58543418479052 0.29648495 0.13798475 prediction 0.422871859017149 Functional Loss - CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18054151 chr19:18054154 nonsynonymous SNV 0.304 4 24 hm5C_associated_SNPs_88598 0 0 1 0 2 CCDC124 chr19:18054070 3'AG 18054070 Downstream 85bp
chr19 18054154 18054154 1 + G A OV 18054151 + 18054131 18054171 41 GGAGGAGGGCAGCGTGGAGGCGCGCACCATCGAGGACGCCA GGAGGAGGGCAGCGTGGAGGCGCACACCATCGAGGACGCCA < 41bp 0.796870114299094 0.58543418479052 0.29648495 0.13798475 prediction 0.422871859017149 Functional Loss - CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18054151 chr19:18054154 nonsynonymous SNV 0.304 4 24 hm5C_associated_SNPs_88598 0 0 1 0 2 CCDC124 chr19:18054184 5'GT 18054184 Upstream 31bp
chr2 120194538 120194538 1 + C T BLCA 120194536 + 120194516 120194556 41 TTCATCCGGACCCTCATCATCACGTGTGTGGCCCTGGCTGT TTCATCCGGACCCTCATCATCATGTGTGTGGCCCTGGCTGT < 41bp 0.819979248469466 0.608545620755218 0.8027564 0.84110415 prediction 0.422867255428496 Functional Loss - TMEM37 ENSG00000171227 CDS Human protein_coding chr2:120194536 chr2:120194538 nonsynonymous SNV 0.435 0 23 hm5C_associated_SNPs_88599 0 0 1 0 1 TMEM37 chr2:120194465 3'AG 120194465 Downstream 74bp
chr17 27577318 27577318 1 + C T COAD 27577316 + 27577296 27577336 41 TCCCTGAAGGTGGAAAGTGGCGCGTGAGTATGGACTTCCGC TCCCTGAAGGTGGAAAGTGGCGTGTGAGTATGGACTTCCGC < 41bp 0.836890874791875 0.625459520575849 0.3135263 0.15312207 prediction 0.422862708432052 Functional Loss - CRYBA1 ENSG00000108255 CDS Human protein_coding chr17:27577316 chr17:27577318 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_88601 0 0 0 0 1 CRYBA1 chr17:27577318 5'GT 27577318 Upstream 1bp
chr9 140128134 140128134 1 + G T PAAD 140128132 + 140128112 140128152 41 GCCACAGGCAACGCCACTAACAGCAGTCTCATTAAGCACTG GCCACAGGCAACGCCACTAACATCAGTCTCATTAAGCACTG < 41bp 0.917618352043384 0.706203877283551 0.43830574 0.042679906 prediction 0.422828949519665 Functional Loss - SLC34A3 ENSG00000198569 CDS Human protein_coding chr9:140128132 chr9:140128134 nonsynonymous SNV 0.161 1 23 hm5C_associated_SNPs_88612 0 0 0 0 2 SLC34A3 chr9:140128085 3'AG 140128085 Downstream 50bp
chr9 140128134 140128134 1 + G T PAAD 140128132 + 140128112 140128152 41 GCCACAGGCAACGCCACTAACAGCAGTCTCATTAAGCACTG GCCACAGGCAACGCCACTAACATCAGTCTCATTAAGCACTG < 41bp 0.917618352043384 0.706203877283551 0.43830574 0.042679906 prediction 0.422828949519665 Functional Loss - SLC34A3 ENSG00000198569 CDS Human protein_coding chr9:140128132 chr9:140128134 nonsynonymous SNV 0.161 1 23 hm5C_associated_SNPs_88612 0 0 0 0 2 SLC34A3 chr9:140128174 5'GT 140128174 Upstream 41bp
chr12 104707059 104707059 1 + G A UCEC 104707056 + 104707036 104707076 41 ATGGCAAGAAGGTGATGGTCCTGGACTTTGTCACTCCCACC ATGGCAAGAAGGTGATGGTCCTGAACTTTGTCACTCCCACC < 41bp 0.79235995098572 0.580946276340876 0.5816146 0.35007685 prediction 0.422827349289689 Functional Loss - TXNRD1 ENSG00000198431 CDS Human protein_coding chr12:104707056 chr12:104707059 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_88613 0 0 1 0 1 TXNRD1 chr12:104707023 3'AG 104707023 Downstream 37bp
chr19 45411811 45411811 1 + G A BLCA 45411808 + 45411788 45411828 41 AGGGCGCTGATGGACGAGACCATGAAGGAGTTGAAGGCCTA AGGGCGCTGATGGACGAGACCATAAAGGAGTTGAAGGCCTA < 41bp 0.711412001937802 0.474808235434176 0.31243262 0.30305642 prediction 0.422824003875603 Functional Loss - APOE ENSG00000130203 CDS Human protein_coding chr19:45411808 chr19:45411811 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_88614 0 0 1 0 1 APOE chr19:45411790 3'AG 45411790 Downstream 22bp
chr17 8170199 8170199 1 + G T OV 8170195 + 8170175 8170215 41 CTGGAGCTGGGCCACACAGGCGAGGCCGGGCCCCACGCCAT CTGGAGCTGGGCCACACAGGCGAGTCCGGGCCCCACGCCAT < 41bp 0.716281235944424 0.504871958319069 0.82843286 0.50785804 prediction 0.42281855525071 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8170195 chr17:8170199 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_88615 0 0 1 0 1 PFAS chr17:8170216 5'GT 8170216 Upstream 18bp
chr19 4283154 4283154 1 + G A SKCM 4283151 + 4283131 4283171 41 GGGCAGAAGCCTCGGCAGAGCCGGATGCCCCAGGAAGATGA GGGCAGAAGCCTCGGCAGAGCCGAATGCCCCAGGAAGATGA < 41bp 0.711402632331868 0.472022702955272 0.8948802 0.23202097 prediction 0.422805264663735 Functional Loss - SHD ENSG00000105251 CDS Human protein_coding chr19:4283151 chr19:4283154 synonymous SNV . 0 24 hm5C_associated_SNPs_88619 0 0 0 0 1 SHD chr19:4283239 5'GT 4283239 Upstream 86bp
chr18 21735932 21735932 1 + C T SKCM 21735929 + 21735909 21735949 41 GACTACTACCCCACCCTCATCACCACCTCCAACAGCTGTCT GACTACTACCCCACCCTCATCACTACCTCCAACAGCTGTCT < 41bp 0.752003466362375 0.540602339578119 0.009485543 0.011742353 prediction 0.422802253568512 Functional Loss - CABYR ENSG00000154040 CDS Human protein_coding chr18:21735929 chr18:21735932 nonsynonymous SNV 0.954 2 24 hm5C_associated_SNPs_88620 0 0 1 0 1 CABYR chr18:21736006 5'GT 21736006 Upstream 75bp
chr17 4803312 4803312 1 + G T UCEC 4803308 + 4803288 4803328 41 GAATATCTGGAGCAGAGGTTCAGAGAGCTGAAGTCCCTGGA GAATATCTGGAGCAGAGGTTCAGATAGCTGAAGTCCCTGGA < 41bp 0.712914495553205 0.501514185987051 0.87589514 0.31149566 prediction 0.422800619132308 Functional Loss - C17orf107 ENSG00000205710 CDS Human protein_coding chr17:4803308 chr17:4803312 stopgain 0.133 0 25 hm5C_associated_SNPs_88621 0 0 0 0 1 C17orf107 chr17:4803231 3'AG 4803231 Downstream 82bp
chrX 26211990 26211990 1 + C T SKCM 26211988 + 26211968 26212008 41 CTCGGGGTCACAAGAGTAAGCTCCGTACCTGTGAGAAACGC CTCGGGGTCACAAGAGTAAGCTTCGTACCTGTGAGAAACGC < 41bp 0.8106130984838 0.59921414486926 0.28691918 0.21618134 prediction 0.422797907229079 Functional Loss - MAGEB6 ENSG00000176746 CDS Human protein_coding chrX:26211988 chrX:26211990 synonymous SNV . 0 23 hm5C_associated_SNPs_88623 0 0 0 0 1 MAGEB6 chrX:26211903 3'AG 26211903 Downstream 88bp
chr6 45480144 45480144 1 + G T UCEC 45480142 + 45480122 45480162 41 CGATGTGCCTAGGCGCATTTCAGGTAAAGACCGTGCTTTAA CGATGTGCCTAGGCGCATTTCATGTAAAGACCGTGCTTTAA < 41bp 0.711398878685945 0.35662969823663 0.91880697 0.20441347 prediction 0.422797757371889 Functional Loss - RUNX2 ENSG00000124813 CDS Human protein_coding chr6:45480142 chr6:45480144 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_88624 0 0 0 0 1 RUNX2 chr6:45480144 5'GT 45480144 Upstream 1bp
chr3 50112728 50112728 1 + G A UCEC 50112725 + 50112705 50112745 41 GCTGGAGGAAAGGGACAGGCCTGGGATATGGCCATCCTGGA GCTGGAGGAAAGGGACAGGCCTGAGATATGGCCATCCTGGA < 41bp 0.779762415192989 0.568366535178515 0.5624143 0.312257 prediction 0.422791760028949 Functional Loss - RBM6 ENSG00000004534 CDS Human protein_coding chr3:50112725 chr3:50112728 nonsynonymous SNV 0.990 5 24 hm5C_associated_SNPs_88627 0 0 1 0 2 RBM6 chr3:50112634 3'AG 50112634 Downstream 95bp
chr3 50112728 50112728 1 + G A UCEC 50112725 + 50112705 50112745 41 GCTGGAGGAAAGGGACAGGCCTGGGATATGGCCATCCTGGA GCTGGAGGAAAGGGACAGGCCTGAGATATGGCCATCCTGGA < 41bp 0.779762415192989 0.568366535178515 0.5624143 0.312257 prediction 0.422791760028949 Functional Loss - RBM6 ENSG00000004534 CDS Human protein_coding chr3:50112725 chr3:50112728 nonsynonymous SNV 0.990 5 24 hm5C_associated_SNPs_88627 0 0 1 0 2 RBM6 chr3:50112763 5'GT 50112763 Upstream 36bp
chrX 54837315 54837315 1 + C T LUAD 54837313 + 54837293 54837333 41 CAGAGTCAGGCTTCTGGAACCACAGGTGGCCGAAGGGTCTC CAGAGTCAGGCTTCTGGAACCATAGGTGGCCGAAGGGTCTC < 41bp 0.848101302615522 0.636708915124139 0.8243729 0.85790324 prediction 0.422784774982766 Functional Loss - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54837313 chrX:54837315 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_88630 0 0 1 0 1 MAGED2 chrX:54837254 3'AG 54837254 Downstream 62bp
chr8 144130643 144130643 1 + G A rs78140118 144130640 + 144130620 144130660 41 TTGCAGGATTCTCTCGGCACCACGGGAACCACCTTCTCTAC TTGCAGGATTCTCTCGGCACCACAGGAACCACCTTCTCTAC < 41bp 0.796148843680675 0.58475745711173 0.24448648 0.39819896 prediction 0.42278277313789 Functional Loss - C8orf31 ENSG00000177335 CDS Human processed_transcript chr8:144130640 chr8:144130643 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_88631 0 0 0 0 2 C8orf31 chr8:144130626 3'AG 144130626 Downstream 18bp
chr8 144130643 144130643 1 + G A rs78140118 144130640 + 144130620 144130660 41 TTGCAGGATTCTCTCGGCACCACGGGAACCACCTTCTCTAC TTGCAGGATTCTCTCGGCACCACAGGAACCACCTTCTCTAC < 41bp 0.796148843680675 0.58475745711173 0.24448648 0.39819896 prediction 0.42278277313789 Functional Loss - C8orf31 ENSG00000177335 CDS Human processed_transcript chr8:144130640 chr8:144130643 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_88631 0 0 0 0 2 C8orf31 chr8:144130715 5'GT 144130715 Upstream 73bp
chr2 170666827 170666827 1 + A C BLCA 170666823 + 170666803 170666843 41 AAGAAAAGATTGGATGCTTGCTGAAATTTTCGGGTGATTTA AAGAAAAGATTGGATGCTTGCTGACATTTTCGGGTGATTTA < 41bp 0.7113911212904 0.304463404010975 0.12045282 0.038626462 prediction 0.422782242580799 Functional Loss - SSB ENSG00000138385 CDS Human protein_coding chr2:170666823 chr2:170666827 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_88632 0 0 1 0 1 SSB chr2:170666793 3'AG 170666793 Downstream 35bp
chr22 37331676 37331676 1 + C T rs200069235 37331673 + 37331653 37331693 41 CCTCCGTGGTGTCTTCCAGGCTGCGCAGAAAGTGGGAGGAG CCTCCGTGGTGTCTTCCAGGCTGTGCAGAAAGTGGGAGGAG < 41bp 0.71604007740485 0.50464985209597 0.15565872 0.10566139 prediction 0.42278045061776 Functional Loss - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37331673 chr22:37331676 nonsynonymous SNV 0.176 3 24 hm5C_associated_SNPs_88633 0 0 0 0 2 CSF2RB chr22:37331672 3'AG 37331672 Downstream 5bp
chr22 37331676 37331676 1 + C T rs200069235 37331673 + 37331653 37331693 41 CCTCCGTGGTGTCTTCCAGGCTGCGCAGAAAGTGGGAGGAG CCTCCGTGGTGTCTTCCAGGCTGTGCAGAAAGTGGGAGGAG < 41bp 0.71604007740485 0.50464985209597 0.15565872 0.10566139 prediction 0.42278045061776 Functional Loss - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37331673 chr22:37331676 nonsynonymous SNV 0.176 3 24 hm5C_associated_SNPs_88633 0 0 0 0 2 CSF2RB chr22:37331729 5'GT 37331729 Upstream 54bp
chr7 155255078 155255078 1 + G A OV 155255075 + 155255055 155255095 41 TATCTACCCAGGTCCCAGGTCTCGAAAACCAAAGAAGAAGA TATCTACCCAGGTCCCAGGTCTCAAAAACCAAAGAAGAAGA < 41bp 0.711389957956941 0.486083580727853 0.7044723 0.43939787 prediction 0.422779915913881 Functional Loss - EN2 ENSG00000164778 CDS Human protein_coding chr7:155255075 chr7:155255078 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_88634 0 0 1 0 1 EN2 chr7:155255066 3'AG 155255066 Downstream 13bp
chr7 155255077 155255077 1 + C T SKCM 155255075 + 155255055 155255095 41 TATCTACCCAGGTCCCAGGTCTCGAAAACCAAAGAAGAAGA TATCTACCCAGGTCCCAGGTCTTGAAAACCAAAGAAGAAGA < 41bp 0.711389957956941 0.415869411621054 0.7044723 0.23870116 prediction 0.422779915913881 Functional Loss - EN2 ENSG00000164778 CDS Human protein_coding chr7:155255075 chr7:155255077 stopgain 0.995 1 23 hm5C_associated_SNPs_88635 0 0 1 0 1 EN2 chr7:155255066 3'AG 155255066 Downstream 12bp
chr16 67574511 67574511 1 + G A UCEC 67574508 + 67574488 67574528 41 ATGAAATATGGGCGTCAGCGCTGGAAACTACGGGGCCGAAT ATGAAATATGGGCGTCAGCGCTGAAAACTACGGGGCCGAAT < 41bp 0.813639902067856 0.602253061670321 0.8948326 0.50575364 prediction 0.422773680795069 Functional Loss - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67574508 chr16:67574511 stopgain 1.000 1 24 hm5C_associated_SNPs_88638 0 0 1 0 2 RIPOR1 chr16:67574482 3'AG 67574482 Downstream 30bp
chr16 67574511 67574511 1 + G A UCEC 67574508 + 67574488 67574528 41 ATGAAATATGGGCGTCAGCGCTGGAAACTACGGGGCCGAAT ATGAAATATGGGCGTCAGCGCTGAAAACTACGGGGCCGAAT < 41bp 0.813639902067856 0.602253061670321 0.8948326 0.50575364 prediction 0.422773680795069 Functional Loss - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67574508 chr16:67574511 stopgain 1.000 1 24 hm5C_associated_SNPs_88638 0 0 1 0 2 RIPOR1 chr16:67574607 5'GT 67574607 Upstream 97bp
chr15 65945080 65945080 1 + G A UCEC 65945077 + 65945057 65945097 41 CATCACCAGTGTGATTGTCGCTCGAAAAGGCCTGGGAGACA CATCACCAGTGTGATTGTCGCTCAAAAAGGCCTGGGAGACA < 41bp 0.780369136599672 0.568984673722521 0.21869403 0.10085404 prediction 0.422768925754301 Functional Loss - SLC24A1 ENSG00000074621 CDS Human protein_coding chr15:65945077 chr15:65945080 nonsynonymous SNV 0.986 4 24 hm5C_associated_SNPs_88639 0 0 1 0 1 SLC24A1 chr15:65945146 5'GT 65945146 Upstream 67bp
chr3 16250049 16250049 1 + G A SKCM 16250046 + 16250026 16250066 41 CCGGTGATAGATGTGATTGACTGGAAGACTTTCCAGTATTA CCGGTGATAGATGTGATTGACTGAAAGACTTTCCAGTATTA < 41bp 0.711381714298006 0.478336362654336 0.31040272 0.08812633 prediction 0.422763428596012 Functional Loss - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16250046 chr3:16250049 stopgain 1.000 1 24 hm5C_associated_SNPs_88642 0 0 0 0 1 GALNT15 chr3:16250010 3'AG 16250010 Downstream 40bp
chr11 89896507 89896507 1 + G A LUSC 89896504 + 89896484 89896524 41 ATGTTATTCTGGGAGGTCACCGGGACTCCTGGGTATTTGGA ATGTTATTCTGGGAGGTCACCGGAACTCCTGGGTATTTGGA < 41bp 0.772588007282923 0.561213030456921 0.932907 0.91854227 prediction 0.422749953652005 Functional Loss - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89896504 chr11:89896507 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_88645 0 0 0 0 2 NAALAD2 chr11:89896478 3'AG 89896478 Downstream 30bp
chr11 89896507 89896507 1 + G A LUSC 89896504 + 89896484 89896524 41 ATGTTATTCTGGGAGGTCACCGGGACTCCTGGGTATTTGGA ATGTTATTCTGGGAGGTCACCGGAACTCCTGGGTATTTGGA < 41bp 0.772588007282923 0.561213030456921 0.932907 0.91854227 prediction 0.422749953652005 Functional Loss - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89896504 chr11:89896507 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_88645 0 0 0 0 2 NAALAD2 chr11:89896597 5'GT 89896597 Upstream 91bp
chr17 80319849 80319849 1 + G A rs138816074 80319846 + 80319826 80319866 41 GTCCCCACTGAGCTGGGACCCAGGTCATCCACCCCACCCCA GTCCCCACTGAGCTGGGACCCAGATCATCCACCCCACCCCA < 41bp 0.733379885042151 0.522011539848046 0.59140927 0.29725087 prediction 0.42273669038821 Functional Loss - TEX19 ENSG00000182459 UTR5 Human protein_coding chr17:80319846 chr17:80319849 . . 0 24 hm5C_associated_SNPs_88648 0 0 0 0 1 TEX19 chr17:80319756 3'AG 80319756 Downstream 94bp
chr19 12014459 12014459 1 + G A HNSC 12014456 + 12014436 12014476 41 TGGGCTTTGCTGGATATTTCCCAGAGGAAACTCTACAAGGA TGGGCTTTGCTGGATATTTCCCAAAGGAAACTCTACAAGGA < 41bp 0.789222674203598 0.577856101200886 0.797257 0.28908283 prediction 0.422733146005424 Functional Loss - ZNF69 ENSG00000198429 CDS Human protein_coding chr19:12014456 chr19:12014459 synonymous SNV . 0 24 hm5C_associated_SNPs_88649 0 0 1 0 2 ZNF69 chr19:12014430 3'AG 12014430 Downstream 30bp
chr19 12014459 12014459 1 + G A HNSC 12014456 + 12014436 12014476 41 TGGGCTTTGCTGGATATTTCCCAGAGGAAACTCTACAAGGA TGGGCTTTGCTGGATATTTCCCAAAGGAAACTCTACAAGGA < 41bp 0.789222674203598 0.577856101200886 0.797257 0.28908283 prediction 0.422733146005424 Functional Loss - ZNF69 ENSG00000198429 CDS Human protein_coding chr19:12014456 chr19:12014459 synonymous SNV . 0 24 hm5C_associated_SNPs_88649 0 0 1 0 2 ZNF69 chr19:12014514 5'GT 12014514 Upstream 56bp
chr7 128492994 128492994 1 + G A LUAD 128492991 + 128492971 128493011 41 CTGGTGGGGCCATCTGAGATCGGGGACGCCAGCAAGGTGCG CTGGTGGGGCCATCTGAGATCGGAGACGCCAGCAAGGTGCG < 41bp 0.711364030311955 0.46409606741434 0.92282 0.902678 prediction 0.422728060623909 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128492991 chr7:128492994 synonymous SNV . 0 24 hm5C_associated_SNPs_88650 0 0 1 0 1 FLNC chr7:128493085 5'GT 128493085 Upstream 92bp
chr11 2424091 2424091 1 + G A STAD 2424088 + 2424068 2424108 41 CCGTCAGGCCTCCTCCCAGCCACGGTGCAGCCATTCCATCT CCGTCAGGCCTCCTCCCAGCCACAGTGCAGCCATTCCATCT < 41bp 0.809305215650425 0.597942790051227 0.068107456 0.094500095 prediction 0.422724851198397 Functional Loss - TSSC4 ENSG00000184281 CDS Human protein_coding chr11:2424088 chr11:2424091 synonymous SNV . 0 24 hm5C_associated_SNPs_88653 0 0 1 0 1 TSSC4 chr11:2424075 3'AG 2424075 Downstream 17bp
chr11 121485731 121485731 1 + A T OV 121485727 + 121485707 121485747 41 GGCCAAAGCCATCAACCAGACTGCAGTGGAATGTACCTGGA GGCCAAAGCCATCAACCAGACTGCTGTGGAATGTACCTGGA < 41bp 0.711361533766475 0.372015655306193 0.3234185 0.24646291 prediction 0.422723067532951 Functional Loss - SORL1 ENSG00000137642 CDS Human protein_coding chr11:121485727 chr11:121485731 synonymous SNV . 0 25 hm5C_associated_SNPs_88654 0 0 0 0 1 SORL1 chr11:121485764 5'GT 121485764 Upstream 34bp
chr3 10106450 10106450 1 + G A SKCM 10106447 + 10106427 10106467 41 CTGTGAAAGCACTGTACGGACTGGAAGAATACGACACTCAG CTGTGAAAGCACTGTACGGACTGAAAGAATACGACACTCAG < 41bp 0.773031249408673 0.561670260688183 0.15920347 0.09067646 prediction 0.422721977440979 Functional Loss - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10106447 chr3:10106450 nonsynonymous SNV 0.599 3 24 hm5C_associated_SNPs_88655 0 0 1 0 1 FANCD2 chr3:10106413 3'AG 10106413 Downstream 38bp
chr19 17651233 17651233 1 + C T COAD 17651230 + 17651210 17651250 41 GGGGACCGCTCGAGTCGTGCCTGCGCCGGGAGGTGGACCCG GGGGACCGCTCGAGTCGTGCCTGTGCCGGGAGGTGGACCCG < 41bp 0.720151091300805 0.508792246033717 0.3350941 0.18271962 prediction 0.422717690534176 Functional Loss - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17651230 chr19:17651233 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_88657 0 0 0 0 1 FAM129C chr19:17651201 3'AG 17651201 Downstream 33bp
chr11 703087 703087 1 + C T CESC 703085 + 703065 703105 41 ACTGGGCCCTCAGCGCCACGCTCCTGGCCCTTCACGGCCTG ACTGGGCCCTCAGCGCCACGCTTCTGGCCCTTCACGGCCTG < 41bp 0.711358500732717 0.443977558749016 0.14608788 0.12106189 prediction 0.422717001465434 Functional Loss - TMEM80 ENSG00000177042 CDS Human protein_coding chr11:703085 chr11:703087 synonymous SNV . 0 23 hm5C_associated_SNPs_88658 0 0 1 0 1 TMEM80 chr11:703146 5'GT 703146 Upstream 60bp
chr1 111861993 111861993 1 + G A UCEC 111861990 + 111861970 111862010 41 AAATTTGGAGGCGCCATGGTCTGGGCCATTGATCTGGATGA AAATTTGGAGGCGCCATGGTCTGAGCCATTGATCTGGATGA < 41bp 0.81340031076585 0.602041989740422 0.8932056 0.7322367 prediction 0.422716642050856 Functional Loss - CHIA ENSG00000134216 CDS Human protein_coding chr1:111861990 chr1:111861993 stopgain 0.997 0 24 hm5C_associated_SNPs_88660 0 0 0 0 2 CHIA chr1:111861949 3'AG 111861949 Downstream 45bp
chr1 111861993 111861993 1 + G A UCEC 111861990 + 111861970 111862010 41 AAATTTGGAGGCGCCATGGTCTGGGCCATTGATCTGGATGA AAATTTGGAGGCGCCATGGTCTGAGCCATTGATCTGGATGA < 41bp 0.81340031076585 0.602041989740422 0.8932056 0.7322367 prediction 0.422716642050856 Functional Loss - CHIA ENSG00000134216 CDS Human protein_coding chr1:111861990 chr1:111861993 stopgain 0.997 0 24 hm5C_associated_SNPs_88660 0 0 0 0 2 CHIA chr1:111862090 5'GT 111862090 Upstream 98bp
chr5 76607836 76607836 1 + G T COAD 76607832 + 76607812 76607852 41 TATTTAGCAGGTGTCTTCTGCGGAGGTGCGCATCGGGCCCA TATTTAGCAGGTGTCTTCTGCGGATGTGCGCATCGGGCCCA < 41bp 0.734280498381324 0.522927447881014 0.91390765 0.800942 prediction 0.42270610100062 Functional Loss - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76607832 chr5:76607836 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_88664 0 0 0 0 2 PDE8B chr5:76607819 3'AG 76607819 Downstream 18bp
chr5 76607836 76607836 1 + G T COAD 76607832 + 76607812 76607852 41 TATTTAGCAGGTGTCTTCTGCGGAGGTGCGCATCGGGCCCA TATTTAGCAGGTGTCTTCTGCGGATGTGCGCATCGGGCCCA < 41bp 0.734280498381324 0.522927447881014 0.91390765 0.800942 prediction 0.42270610100062 Functional Loss - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76607832 chr5:76607836 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_88664 0 0 0 0 2 PDE8B chr5:76607878 5'GT 76607878 Upstream 43bp
chr20 55012428 55012428 1 + C T SKCM 55012425 + 55012405 55012445 41 CGCTGCAGACAGGCCGTGCCCCCCATTCCTGAGAGGCCTGG CGCTGCAGACAGGCCGTGCCCCCTATTCCTGAGAGGCCTGG < 41bp 0.746841538890501 0.53548974007984 0.013265818 0.013863772 prediction 0.422703597621323 Functional Loss - CASS4 ENSG00000087589 CDS Human protein_coding chr20:55012425 chr20:55012428 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_88665 0 0 0 0 1 CASS4 chr20:55012480 5'GT 55012480 Upstream 53bp
chr20 44640876 44640876 1 + C T BLCA 44640874 + 44640854 44640894 41 CGACCTGTACCAGCGAGGGCCGCGGAGATGGGCGCCTCTGG CGACCTGTACCAGCGAGGGCCGTGGAGATGGGCGCCTCTGG < 41bp 0.711348856735044 0.439878626080805 0.6333946 0.50209 prediction 0.422697713470088 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44640874 chr20:44640876 synonymous SNV . 0 23 hm5C_associated_SNPs_88668 0 0 1 0 1 MMP9 chr20:44640952 5'GT 44640952 Upstream 77bp
chr20 44640877 44640877 1 + G A COAD 44640874 + 44640854 44640894 41 CGACCTGTACCAGCGAGGGCCGCGGAGATGGGCGCCTCTGG CGACCTGTACCAGCGAGGGCCGCAGAGATGGGCGCCTCTGG < 41bp 0.711348856735044 0.456547259648609 0.6333946 0.51399654 prediction 0.422697713470088 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44640874 chr20:44640877 nonsynonymous SNV 0.049 0 24 hm5C_associated_SNPs_88669 0 0 1 0 1 MMP9 chr20:44640952 5'GT 44640952 Upstream 76bp
chr8 133911066 133911066 1 + C T UCEC 133911064 + 133911044 133911084 41 CCCGACAACCTGCGAGAAATCTCGAACCAGTGGGCTGCTTT CCCGACAACCTGCGAGAAATCTTGAACCAGTGGGCTGCTTT < 41bp 0.711347533779132 0.42925435059787 0.90734196 0.19123855 prediction 0.422695067558264 Functional Loss - TG ENSG00000042832 CDS Human protein_coding chr8:133911064 chr8:133911066 stopgain 0.012 0 23 hm5C_associated_SNPs_88671 0 0 0 0 2 TG chr8:133911043 3'AG 133911043 Downstream 24bp
chr8 133911066 133911066 1 + C T UCEC 133911064 + 133911044 133911084 41 CCCGACAACCTGCGAGAAATCTCGAACCAGTGGGCTGCTTT CCCGACAACCTGCGAGAAATCTTGAACCAGTGGGCTGCTTT < 41bp 0.711347533779132 0.42925435059787 0.90734196 0.19123855 prediction 0.422695067558264 Functional Loss - TG ENSG00000042832 CDS Human protein_coding chr8:133911064 chr8:133911066 stopgain 0.012 0 23 hm5C_associated_SNPs_88671 0 0 0 0 2 TG chr8:133911155 5'GT 133911155 Upstream 90bp
chr5 137206604 137206604 1 + C T SKCM 137206601 + 137206581 137206621 41 CCAGGCCAAAGGGTTACAACCACCTATAACCAGTCCCCAGC CCAGGCCAAAGGGTTACAACCACTTATAACCAGTCCCCAGC < 41bp 0.736220742437507 0.524881800090964 0.042358845 0.015615672 prediction 0.422677884693085 Functional Loss - MYOT ENSG00000120729 CDS Human protein_coding chr5:137206601 chr5:137206604 synonymous SNV . 0 24 hm5C_associated_SNPs_88678 0 0 0 0 2 MYOT chr5:137206566 3'AG 137206566 Downstream 39bp
chr5 137206604 137206604 1 + C T SKCM 137206601 + 137206581 137206621 41 CCAGGCCAAAGGGTTACAACCACCTATAACCAGTCCCCAGC CCAGGCCAAAGGGTTACAACCACTTATAACCAGTCCCCAGC < 41bp 0.736220742437507 0.524881800090964 0.042358845 0.015615672 prediction 0.422677884693085 Functional Loss - MYOT ENSG00000120729 CDS Human protein_coding chr5:137206601 chr5:137206604 synonymous SNV . 0 24 hm5C_associated_SNPs_88678 0 0 0 0 2 MYOT chr5:137206696 5'GT 137206696 Upstream 93bp
chr15 43444013 43444013 1 + G A UCEC 43444010 + 43443990 43444030 41 ACCGGATTTTTGCTTTTGATCACGACCTCTTTAGCTTTGCA ACCGGATTTTTGCTTTTGATCACAACCTCTTTAGCTTTGCA < 41bp 0.792067260360772 0.580734941734736 0.06210482 0.05927393 prediction 0.422664637252073 Functional Loss - TMEM62 ENSG00000137842 CDS Human protein_coding chr15:43444010 chr15:43444013 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_88681 0 0 0 0 1 TMEM62 chr15:43443988 3'AG 43443988 Downstream 26bp
chrX 54954175 54954175 1 + C T LUSC 54954173 + 54954153 54954193 41 TCTGGGGCTTGCGCTCCTACCACGAGACTAGCAAGATGAAA TCTGGGGCTTGCGCTCCTACCATGAGACTAGCAAGATGAAA < 41bp 0.856139778093372 0.644809878363941 0.46664855 0.42773858 prediction 0.422659799458862 Functional Loss - TRO ENSG00000067445 CDS Human protein_coding chrX:54954173 chrX:54954175 synonymous SNV . 0 23 hm5C_associated_SNPs_88683 0 0 1 0 1 TRO chrX:54954100 3'AG 54954100 Downstream 76bp
chr7 100552935 100552935 1 + G T LUAD 100552931 + 100552911 100552951 41 AGGGACAGTGTGCTTGCCTTCCGGGGTTTTCTGGGGACCGC AGGGACAGTGTGCTTGCCTTCCGGTGTTTTCTGGGGACCGC < 41bp 0.723333490878482 0.51200413618483 0.90697384 0.7929138 prediction 0.422658709387304 Functional Loss - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100552931 chr7:100552935 nonsynonymous SNV 0.003 2 25 hm5C_associated_SNPs_88685 0 0 0 0 1 MUC3A chr7:100552881 3'AG 100552881 Downstream 55bp
chr10 94410215 94410215 1 + G A SKCM 94410212 + 94410192 94410232 41 ATACTGAAGAACCTCTAAGTCAAGAGCCATCTGTAGATGCT ATACTGAAGAACCTCTAAGTCAAAAGCCATCTGTAGATGCT < 41bp 0.778419914955459 0.567095336542856 0.38427883 0.17723703 prediction 0.422649156825206 Functional Loss - KIF11 ENSG00000138160 CDS Human protein_coding chr10:94410212 chr10:94410215 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_88687 0 0 1 1 2 KIF11 chr10:94410158 3'AG 94410158 Downstream 58bp
chr10 94410215 94410215 1 + G A SKCM 94410212 + 94410192 94410232 41 ATACTGAAGAACCTCTAAGTCAAGAGCCATCTGTAGATGCT ATACTGAAGAACCTCTAAGTCAAAAGCCATCTGTAGATGCT < 41bp 0.778419914955459 0.567095336542856 0.38427883 0.17723703 prediction 0.422649156825206 Functional Loss - KIF11 ENSG00000138160 CDS Human protein_coding chr10:94410212 chr10:94410215 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_88687 0 0 1 1 2 KIF11 chr10:94410274 5'GT 94410274 Upstream 60bp
chr18 72238439 72238439 1 + G A COAD 72238436 + 72238416 72238456 41 TGCAGGTGAAATGCAGAGACCAGGATTTTCACTCAGGAACC TGCAGGTGAAATGCAGAGACCAGAATTTTCACTCAGGAACC < 41bp 0.811753419080227 0.600432777811884 0.70009875 0.3566578 prediction 0.422641282536685 Functional Loss - CNDP1 ENSG00000150656 CDS Human protein_coding chr18:72238436 chr18:72238439 nonsynonymous SNV 0.974 4 24 hm5C_associated_SNPs_88688 0 0 0 0 2 CNDP1 chr18:72238421 3'AG 72238421 Downstream 19bp
chr18 72238439 72238439 1 + G A COAD 72238436 + 72238416 72238456 41 TGCAGGTGAAATGCAGAGACCAGGATTTTCACTCAGGAACC TGCAGGTGAAATGCAGAGACCAGAATTTTCACTCAGGAACC < 41bp 0.811753419080227 0.600432777811884 0.70009875 0.3566578 prediction 0.422641282536685 Functional Loss - CNDP1 ENSG00000150656 CDS Human protein_coding chr18:72238436 chr18:72238439 nonsynonymous SNV 0.974 4 24 hm5C_associated_SNPs_88688 0 0 0 0 2 CNDP1 chr18:72238505 5'GT 72238505 Upstream 67bp
chr6 37252206 37252206 1 + G A COAD 37252203 + 37252183 37252223 41 CATTGAACAGTATTATGACTCTCGAAACGAGGAACATCACC CATTGAACAGTATTATGACTCTCAAAACGAGGAACATCACC < 41bp 0.771430132589583 0.560111555721843 0.92222226 0.41353077 prediction 0.42263715373548 Functional Loss - TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37252203 chr6:37252206 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_88690 0 0 1 0 2 TBC1D22B chr6:37252112 3'AG 37252112 Downstream 95bp
chr6 37252206 37252206 1 + G A COAD 37252203 + 37252183 37252223 41 CATTGAACAGTATTATGACTCTCGAAACGAGGAACATCACC CATTGAACAGTATTATGACTCTCAAAACGAGGAACATCACC < 41bp 0.771430132589583 0.560111555721843 0.92222226 0.41353077 prediction 0.42263715373548 Functional Loss - TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37252203 chr6:37252206 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_88690 0 0 1 0 2 TBC1D22B chr6:37252240 5'GT 37252240 Upstream 35bp
chr14 74318685 74318685 1 + C T rs538330514 74318683 + 74318663 74318703 41 CGGCTCCCGCGACTGTGGCTCCCGAAGCTGCTTCGGGCCCC CGGCTCCCGCGACTGTGGCTCCTGAAGCTGCTTCGGGCCCC < 41bp 0.748225687303694 0.536907766831213 0.34782028 0.34267855 prediction 0.422635840944962 Functional Loss - PTGR2 ENSG00000140043;ENSG00000258653 UTR5 Human protein_coding chr14:74318683 chr14:74318685 . . 0 23 hm5C_associated_SNPs_88693 0 0 0 0 2 PTGR2 chr14:74318646 3'AG 74318646 Downstream 40bp
chr14 74318685 74318685 1 + C T rs538330514 74318683 + 74318663 74318703 41 CGGCTCCCGCGACTGTGGCTCCCGAAGCTGCTTCGGGCCCC CGGCTCCCGCGACTGTGGCTCCTGAAGCTGCTTCGGGCCCC < 41bp 0.748225687303694 0.536907766831213 0.34782028 0.34267855 prediction 0.422635840944962 Functional Loss - PTGR2 ENSG00000140043;ENSG00000258653 UTR5 Human other chr14:74318683 chr14:74318685 . . 0 23 hm5C_associated_SNPs_88693 0 0 0 0 2 PTGR2 chr14:74318707 5'GT 74318707 Upstream 23bp
chr11 67161231 67161231 1 + C T rs144155838 67161229 + 67161209 67161249 41 CAGGCCGTCTTCGACCCAGCCTCGTGCCCCCACATGCTCCG CAGGCCGTCTTCGACCCAGCCTTGTGCCCCCACATGCTCCG < 41bp 0.711316684600435 0.430715260138893 0.081042886 0.07282594 prediction 0.42263336920087 Functional Loss - RAD9A ENSG00000172613 CDS Human protein_coding chr11:67161229 chr11:67161231 nonsynonymous SNV 0.458 0 23 hm5C_associated_SNPs_88694 0 0 1 0 2 RAD9A chr11:67161162 3'AG 67161162 Downstream 70bp
chr11 67161231 67161231 1 + C T rs144155838 67161229 + 67161209 67161249 41 CAGGCCGTCTTCGACCCAGCCTCGTGCCCCCACATGCTCCG CAGGCCGTCTTCGACCCAGCCTTGTGCCCCCACATGCTCCG < 41bp 0.711316684600435 0.430715260138893 0.081042886 0.07282594 prediction 0.42263336920087 Functional Loss - RAD9A ENSG00000172613 CDS Human protein_coding chr11:67161229 chr11:67161231 nonsynonymous SNV 0.458 0 23 hm5C_associated_SNPs_88694 0 0 1 0 2 RAD9A chr11:67161261 5'GT 67161261 Upstream 31bp
chr11 67161232 67161232 1 + G A BLCA 67161229 + 67161209 67161249 41 CAGGCCGTCTTCGACCCAGCCTCGTGCCCCCACATGCTCCG CAGGCCGTCTTCGACCCAGCCTCATGCCCCCACATGCTCCG < 41bp 0.711316684600435 0.457999717490673 0.081042886 0.035803556 prediction 0.42263336920087 Functional Loss - RAD9A ENSG00000172613 CDS Human protein_coding chr11:67161229 chr11:67161232 synonymous SNV . 0 24 hm5C_associated_SNPs_88695 0 0 1 0 2 RAD9A chr11:67161162 3'AG 67161162 Downstream 71bp
chr11 67161232 67161232 1 + G A BLCA 67161229 + 67161209 67161249 41 CAGGCCGTCTTCGACCCAGCCTCGTGCCCCCACATGCTCCG CAGGCCGTCTTCGACCCAGCCTCATGCCCCCACATGCTCCG < 41bp 0.711316684600435 0.457999717490673 0.081042886 0.035803556 prediction 0.42263336920087 Functional Loss - RAD9A ENSG00000172613 CDS Human protein_coding chr11:67161229 chr11:67161232 synonymous SNV . 0 24 hm5C_associated_SNPs_88695 0 0 1 0 2 RAD9A chr11:67161261 5'GT 67161261 Upstream 30bp
chr19 1080343 1080343 1 + G T UCEC 1080341 + 1080321 1080361 41 GGGAGCCCCCCAGAAGAAGGCGGGTGCACTGAGGGCACACC GGGAGCCCCCCAGAAGAAGGCGTGTGCACTGAGGGCACACC < 41bp 0.711315745169852 0.343308963851378 0.89436734 0.35759875 prediction 0.422631490339703 Functional Loss - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1080341 chr19:1080343 nonsynonymous SNV 0.004 1 23 hm5C_associated_SNPs_88696 0 0 1 0 2 ARHGAP45 chr19:1080254 3'AG 1080254 Downstream 90bp
chr19 1080343 1080343 1 + G T UCEC 1080341 + 1080321 1080361 41 GGGAGCCCCCCAGAAGAAGGCGGGTGCACTGAGGGCACACC GGGAGCCCCCCAGAAGAAGGCGTGTGCACTGAGGGCACACC < 41bp 0.711315745169852 0.343308963851378 0.89436734 0.35759875 prediction 0.422631490339703 Functional Loss - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1080341 chr19:1080343 nonsynonymous SNV 0.004 1 23 hm5C_associated_SNPs_88696 0 0 1 0 2 ARHGAP45 chr19:1080378 5'GT 1080378 Upstream 36bp
chr4 20530693 20530693 1 + G A rs74787220 20530690 + 20530670 20530710 41 AATCAAAAGCTCAACAAAATCCCGGAGCACATTCCCCAGTA AATCAAAAGCTCAACAAAATCCCAGAGCACATTCCCCAGTA < 41bp 0.711314232122914 0.477099609421847 0.30711216 0.14227206 prediction 0.422628464245829 Functional Loss - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20530690 chr4:20530693 synonymous SNV . 0 24 hm5C_associated_SNPs_88698 0 0 1 0 1 SLIT2 chr4:20530722 5'GT 20530722 Upstream 30bp
chr4 20530692 20530692 1 + C T COAD 20530690 + 20530670 20530710 41 AATCAAAAGCTCAACAAAATCCCGGAGCACATTCCCCAGTA AATCAAAAGCTCAACAAAATCCTGGAGCACATTCCCCAGTA < 41bp 0.711314232122914 0.438984726993 0.30711216 0.26209503 prediction 0.422628464245829 Functional Loss - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20530690 chr4:20530692 nonsynonymous SNV 0.662 4 23 hm5C_associated_SNPs_88699 0 0 1 0 1 SLIT2 chr4:20530722 5'GT 20530722 Upstream 31bp
chr4 20530694 20530694 1 + G C LUAD 20530690 + 20530670 20530710 41 AATCAAAAGCTCAACAAAATCCCGGAGCACATTCCCCAGTA AATCAAAAGCTCAACAAAATCCCGCAGCACATTCCCCAGTA < 41bp 0.711314232122914 0.418678923748194 0.30711216 0.10623407 prediction 0.422628464245829 Functional Loss - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20530690 chr4:20530694 nonsynonymous SNV 0.530 2 25 hm5C_associated_SNPs_88700 0 0 1 0 1 SLIT2 chr4:20530722 5'GT 20530722 Upstream 29bp
chr14 100934380 100934380 1 + G A SKCM 100934377 + 100934357 100934397 41 GGTATGGAACGCCGTGGACTCCGGGCACTGCCTGCAGACCT GGTATGGAACGCCGTGGACTCCGAGCACTGCCTGCAGACCT < 41bp 0.814572275688552 0.603258536087648 0.8941736 0.66572434 prediction 0.422627479201808 Functional Loss - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100934377 chr14:100934380 nonsynonymous SNV 0.094 3 24 hm5C_associated_SNPs_88703 0 0 0 0 1 WDR25 chr14:100934358 3'AG 100934358 Downstream 23bp
chr19 3251064 3251064 1 + G T LGG 3251062 + 3251042 3251082 41 CACGAGCAGAAGACCTTGCCCGGAGTGAGTCCTGTGTGGTG CACGAGCAGAAGACCTTGCCCGTAGTGAGTCCTGTGTGGTG < 41bp 0.71131318154629 0.349389622303068 0.91050684 0.34043485 prediction 0.42262636309258 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3251062 chr19:3251064 nonsynonymous SNV 0.879 3 23 hm5C_associated_SNPs_88704 0 0 0 0 2 CELF5 chr19:3250983 3'AG 3250983 Downstream 82bp
chr19 3251064 3251064 1 + G T LGG 3251062 + 3251042 3251082 41 CACGAGCAGAAGACCTTGCCCGGAGTGAGTCCTGTGTGGTG CACGAGCAGAAGACCTTGCCCGTAGTGAGTCCTGTGTGGTG < 41bp 0.71131318154629 0.349389622303068 0.91050684 0.34043485 prediction 0.42262636309258 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3251062 chr19:3251064 nonsynonymous SNV 0.879 3 23 hm5C_associated_SNPs_88704 0 0 0 0 2 CELF5 chr19:3251065 5'GT 3251065 Upstream 2bp
chr10 288050 288050 1 + C T STAD 288047 + 288027 288067 41 CAGAAAGAAGACAATCAAGTCGACGTTCGCTTCTTTGGCCA CAGAAAGAAGACAATCAAGTCGATGTTCGCTTCTTTGGCCA < 41bp 0.711312699327794 0.49562694727226 0.1627197 0.08838168 prediction 0.422625398655588 Functional Loss - ZMYND11 ENSG00000015171 CDS Human protein_coding chr10:288047 chr10:288050 synonymous SNV . 0 24 hm5C_associated_SNPs_88705 0 0 0 0 2 ZMYND11 chr10:287961 3'AG 287961 Downstream 90bp
chr10 288050 288050 1 + C T STAD 288047 + 288027 288067 41 CAGAAAGAAGACAATCAAGTCGACGTTCGCTTCTTTGGCCA CAGAAAGAAGACAATCAAGTCGATGTTCGCTTCTTTGGCCA < 41bp 0.711312699327794 0.49562694727226 0.1627197 0.08838168 prediction 0.422625398655588 Functional Loss - ZMYND11 ENSG00000015171 CDS Human protein_coding chr10:288047 chr10:288050 synonymous SNV . 0 24 hm5C_associated_SNPs_88705 0 0 0 0 2 ZMYND11 chr10:288079 5'GT 288079 Upstream 30bp
chr6 26460041 26460041 1 + C T COAD 26460038 + 26460018 26460058 41 GGTCCTACGATGAGGCCATCCTGCACCTCGTAGTGGCAGGT GGTCCTACGATGAGGCCATCCTGTACCTCGTAGTGGCAGGT < 41bp 0.772985334280864 0.561679312507464 0.042792767 0.02471745 prediction 0.422612043546802 Functional Loss - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26460038 chr6:26460041 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_88709 0 0 1 0 1 BTN2A1 chr6:26460056 5'GT 26460056 Upstream 16bp
chr3 157271115 157271115 1 + G T COAD 157271112 + 157271092 157271132 41 ACTGATACGTCCGGAGAGCACTTGACCTGCCTTAGAAGGTA ACTGATACGTCCGGAGAGCACTTTACCTGCCTTAGAAGGTA < 41bp 0.711305734489058 0.340652405307658 0.095496505 0.07949096 prediction 0.422611468978116 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271112 chr3:157271115 nonsynonymous SNV 0.025 3 24 hm5C_associated_SNPs_88710 0 0 0 13 1 PQLC2L chr3:157271129 5'GT 157271129 Upstream 15bp
chr16 30978309 30978309 1 + G A rs147752310 30978306 + 30978286 30978326 41 CTCGTGGACTGGGCCAAGAGCGGGGGCACTACGGGCATCGA CTCGTGGACTGGGCCAAGAGCGGAGGCACTACGGGCATCGA < 41bp 0.821626569983712 0.610320947616401 0.9415194 0.92272747 prediction 0.422611244734623 Functional Loss - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30978306 chr16:30978309 synonymous SNV . 0 24 hm5C_associated_SNPs_88711 0 0 1 0 1 SETD1A chr16:30978381 5'GT 30978381 Upstream 73bp
chr6 46803212 46803212 1 + C T SKCM 46803209 + 46803189 46803229 41 GACCATAACTGGCCACAGTACTTCAGAGACCCATGTGACCC GACCATAACTGGCCACAGTACTTTAGAGACCCATGTGACCC < 41bp 0.711304293643193 0.477106310340067 0.24047142 0.11480668 prediction 0.422608587286386 Functional Loss - MEP1A ENSG00000112818 CDS Human protein_coding chr6:46803209 chr6:46803212 synonymous SNV . 0 24 hm5C_associated_SNPs_88714 0 0 0 0 1 MEP1A chr6:46803286 5'GT 46803286 Upstream 75bp
chr11 20409581 20409581 1 + G T LIHC 20409577 + 20409557 20409597 41 TGTGTTAGGCGGCCGGGGCGCTGTGGAGAATGAGGAGGACC TGTGTTAGGCGGCCGGGGCGCTGTTGAGAATGAGGAGGACC < 41bp 0.713443486455342 0.502139444359418 0.68702954 0.45687538 prediction 0.422608084191849 Functional Loss - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20409577 chr11:20409581 synonymous SNV . 0 25 hm5C_associated_SNPs_88715 0 0 1 0 1 PRMT3 chr11:20409565 3'AG 20409565 Downstream 17bp
chr1 16358965 16358965 1 + G T TGCT 16358961 + 16358941 16358981 41 TGTCTCCAGGACATCTTGGCCAGGGGCTGCCCCACGGAACC TGTCTCCAGGACATCTTGGCCAGGTGCTGCCCCACGGAACC < 41bp 0.718397283054003 0.507097919950636 0.9357096 0.9283819 prediction 0.422598726206733 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16358961 chr1:16358965 nonsynonymous SNV 0.017 4 25 hm5C_associated_SNPs_88716 0 0 0 0 3 CLCNKA chr1:16358938 3'AG 16358938 Downstream 28bp
chr1 16358965 16358965 1 + G T TGCT 16358961 + 16358941 16358981 41 TGTCTCCAGGACATCTTGGCCAGGGGCTGCCCCACGGAACC TGTCTCCAGGACATCTTGGCCAGGTGCTGCCCCACGGAACC < 41bp 0.718397283054003 0.507097919950636 0.9357096 0.9283819 prediction 0.422598726206733 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16358961 chr1:16358965 nonsynonymous SNV 0.017 4 25 hm5C_associated_SNPs_88716 0 0 0 0 3 CLCNKA chr1:16358941 3'AG 16358941 Downstream 25bp
chr1 16358965 16358965 1 + G T TGCT 16358961 + 16358941 16358981 41 TGTCTCCAGGACATCTTGGCCAGGGGCTGCCCCACGGAACC TGTCTCCAGGACATCTTGGCCAGGTGCTGCCCCACGGAACC < 41bp 0.718397283054003 0.507097919950636 0.9357096 0.9283819 prediction 0.422598726206733 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16358961 chr1:16358965 nonsynonymous SNV 0.017 4 25 hm5C_associated_SNPs_88716 0 0 0 0 3 CLCNKA chr1:16359021 5'GT 16359021 Upstream 57bp
chrX 8433514 8433514 1 + C T rs200872043 8433512 + 8433492 8433532 41 ATGAGTCCAAAGCCGAGAGCCTCGGGACCTCCGGCCAAGGC ATGAGTCCAAAGCCGAGAGCCTTGGGACCTCCGGCCAAGGC < 41bp 0.828815294292135 0.617518981895078 0.14974147 0.34127647 prediction 0.422592624794113 Functional Loss - VCX3B ENSG00000205642 CDS Human protein_coding chrX:8433512 chrX:8433514 nonsynonymous SNV 0.004 2 23 hm5C_associated_SNPs_88718 0 0 0 0 1 VCX3B chrX:8433593 5'GT 8433593 Upstream 80bp
chr8 102585936 102585936 1 + C T SKCM 102585933 + 102585913 102585953 41 CCCTGGAAGCCACCAAATCTCTCCGTCAGAAGCAGGGGGAG CCCTGGAAGCCACCAAATCTCTCTGTCAGAAGCAGGGGGAG < 41bp 0.784513205856879 0.573218716389158 0.19228598 0.10445243 prediction 0.422588978935443 Functional Loss - GRHL2 ENSG00000083307 CDS Human protein_coding chr8:102585933 chr8:102585936 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_88720 0 0 0 0 1 GRHL2 chr8:102585896 3'AG 102585896 Downstream 41bp
chr3 66431254 66431254 1 - G A PRAD 66431257 - 66431237 66431277 41 GGCCGGGTCGTATGCAGTGACTGCAACACCGAAGTGGACTG GGCCGGGTCGTATGCAGTGACTGTAACACCGAAGTGGACTG < 41bp 0.771005061215782 0.559711364752874 0.23418477 0.14093211 prediction 0.422587392925818 Functional Loss - LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66431257 chr3:66431254 synonymous SNV . 0 24 hm5C_associated_SNPs_88721 0 0 1 0 1 LRIG1 chr3:66431285 3'AG 66431285 Downstream 32bp
chr3 119535948 119535948 1 + C T BLCA 119535945 + 119535925 119535965 41 CTGAAGATCATGGCTATGCTCACCGAGCTCCGCAGCATCAA CTGAAGATCATGGCTATGCTCACTGAGCTCCGCAGCATCAA < 41bp 0.719072410603138 0.507780148339743 0.2323918 0.15814054 prediction 0.422584524526789 Functional Loss - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119535945 chr3:119535948 synonymous SNV . 0 24 hm5C_associated_SNPs_88722 0 0 0 0 1 NR1I2 chr3:119535915 3'AG 119535915 Downstream 34bp
chr1 46739122 46739122 1 + G A STAD 46739119 + 46739099 46739139 41 CTGGTTACAGCTCTAAGGCCCTGGAGCCCCAGCTGTCAGGT CTGGTTACAGCTCTAAGGCCCTGAAGCCCCAGCTGTCAGGT < 41bp 0.826973978200687 0.615686607411759 0.52427936 0.113589555 prediction 0.422574741577855 Functional Loss - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739119 chr1:46739122 nonsynonymous SNV 0.913 1 24 hm5C_associated_SNPs_88724 0 0 0 0 2 RAD54L chr1:46739027 3'AG 46739027 Downstream 96bp
chr1 46739122 46739122 1 + G A STAD 46739119 + 46739099 46739139 41 CTGGTTACAGCTCTAAGGCCCTGGAGCCCCAGCTGTCAGGT CTGGTTACAGCTCTAAGGCCCTGAAGCCCCAGCTGTCAGGT < 41bp 0.826973978200687 0.615686607411759 0.52427936 0.113589555 prediction 0.422574741577855 Functional Loss - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739119 chr1:46739122 nonsynonymous SNV 0.913 1 24 hm5C_associated_SNPs_88724 0 0 0 0 2 RAD54L chr1:46739137 5'GT 46739137 Upstream 16bp
chr15 85438322 85438322 1 + G T COAD 85438318 + 85438298 85438338 41 GCTGAGGAGGTTTCTCAAGCCTCAGGGCCATCCCCGCCTGC GCTGAGGAGGTTTCTCAAGCCTCATGGCCATCCCCGCCTGC < 41bp 0.711285495597105 0.49967310660614 0.3939323 0.27250725 prediction 0.42257099119421 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85438318 chr15:85438322 nonsynonymous SNV 0.011 1 25 hm5C_associated_SNPs_88725 0 0 0 0 1 SLC28A1 chr15:85438354 5'GT 85438354 Upstream 33bp
chr15 85438320 85438320 1 + C T LUSC 85438318 + 85438298 85438338 41 GCTGAGGAGGTTTCTCAAGCCTCAGGGCCATCCCCGCCTGC GCTGAGGAGGTTTCTCAAGCCTTAGGGCCATCCCCGCCTGC < 41bp 0.711285495597105 0.452088395299897 0.3939323 0.47628316 prediction 0.42257099119421 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85438318 chr15:85438320 stopgain 0.008 0 23 hm5C_associated_SNPs_88726 0 0 0 0 1 SLC28A1 chr15:85438354 5'GT 85438354 Upstream 35bp
chr1 159277544 159277544 1 + G T HNSC 159277541 + 159277521 159277561 41 TCTGTGTTCCACTACAGCTCCGCGTGAGAAGTACTGGCTAC TCTGTGTTCCACTACAGCTCCGCTTGAGAAGTACTGGCTAC < 41bp 0.711283804397806 0.334541917024367 0.14117315 0.0077281594 prediction 0.422567608795611 Functional Loss - FCER1A ENSG00000179639 CDS Human protein_coding chr1:159277541 chr1:159277544 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_88727 0 0 0 0 1 FCER1A chr1:159277538 3'AG 159277538 Downstream 7bp
chr3 183906113 183906113 1 + C T UCEC 183906110 + 183906090 183906130 41 CTGGAGATGACACTCCTGCCCTGCAGAGTGTGCTGGAGAGT CTGGAGATGACACTCCTGCCCTGTAGAGTGTGCTGGAGAGT < 41bp 0.782311211708146 0.571027785660356 0.043903887 0.047221303 prediction 0.42256685209558 Functional Loss - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183906110 chr3:183906113 stopgain 0.998 1 24 hm5C_associated_SNPs_88728 0 0 1 0 1 ABCF3 chr3:183906195 5'GT 183906195 Upstream 83bp
chr17 4923960 4923960 1 + G A GBM 4923957 + 4923937 4923977 41 AGCAAGGCATCGACATAAAGCTGGAAATGGAGAAGAGGTGC AGCAAGGCATCGACATAAAGCTGAAAATGGAGAAGAGGTGC < 41bp 0.804432144332524 0.593149969584505 0.18798059 0.19589764 prediction 0.422564349496039 Functional Loss - KIF1C ENSG00000129250 CDS Human protein_coding chr17:4923957 chr17:4923960 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_88729 0 0 1 0 1 KIF1C chr17:4923973 5'GT 4923973 Upstream 14bp
chr3 58107011 58107011 1 + G A rs138449267 58107008 + 58106988 58107028 41 CAGGAGTTCACCGTTGATACCAGGGGGGCAGGAGGCCAGGG CAGGAGTTCACCGTTGATACCAGAGGGGCAGGAGGCCAGGG < 41bp 0.711281654687582 0.468735374898413 0.9342099 0.9080626 prediction 0.422563309375164 Functional Loss - FLNB ENSG00000136068 CDS Human protein_coding chr3:58107008 chr3:58107011 synonymous SNV . 0 24 hm5C_associated_SNPs_88730 1 0 1 0 1 FLNB chr3:58106968 3'AG 58106968 Downstream 44bp
chr12 58018666 58018666 1 + G C SKCM 58018662 + 58018642 58018682 41 CTCTTAGCTCCTCCAGGTCCCGGGGCTCTGCATCCTGAGCT CTCTTAGCTCCTCCAGGTCCCGGGCCTCTGCATCCTGAGCT < 41bp 0.711281524272169 0.40135945564582 0.9527937 0.92704284 prediction 0.422563048544338 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58018662 chr12:58018666 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_88731 0 0 0 0 2 SLC26A10 chr12:58018649 3'AG 58018649 Downstream 18bp
chr12 58018666 58018666 1 + G C SKCM 58018662 + 58018642 58018682 41 CTCTTAGCTCCTCCAGGTCCCGGGGCTCTGCATCCTGAGCT CTCTTAGCTCCTCCAGGTCCCGGGCCTCTGCATCCTGAGCT < 41bp 0.711281524272169 0.40135945564582 0.9527937 0.92704284 prediction 0.422563048544338 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58018662 chr12:58018666 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_88731 0 0 0 0 2 SLC26A10 chr12:58018765 5'GT 58018765 Upstream 100bp
chr6 33258544 33258544 1 + G T HNSC 33258542 + 33258522 33258562 41 TTGAGCGGCAGTCAGAGCAACAGAGGGAGACCCTTGCTCAG TTGAGCGGCAGTCAGAGCAACATAGGGAGACCCTTGCTCAG < 41bp 0.875734510376478 0.664456464969046 0.9090161 0.738964 prediction 0.422556090814865 Functional Loss - PFDN6 ENSG00000204220 CDS Human protein_coding chr6:33258542 chr6:33258544 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_88732 0 0 1 0 1 PFDN6 chr6:33258493 3'AG 33258493 Downstream 52bp
chr17 45009485 45009485 1 + A C SKCM 45009481 + 45009461 45009501 41 CAGCACCTGCAGACTGCGCTCAGAAACTTCCAGCATCGGCG CAGCACCTGCAGACTGCGCTCAGACACTTCCAGCATCGGCG < 41bp 0.711275453313138 0.290668671023275 0.014170259 0.0060764253 prediction 0.422550906626277 Functional Loss - GOSR2 ENSG00000108433;ENSG00000262633 CDS Human other chr17:45009481 chr17:45009485 nonsynonymous SNV 0.992 3 25 hm5C_associated_SNPs_88735 0 0 1 0 2 GOSR2 chr17:45009433 3'AG 45009433 Downstream 53bp
chr17 45009485 45009485 1 + A C SKCM 45009481 + 45009461 45009501 41 CAGCACCTGCAGACTGCGCTCAGAAACTTCCAGCATCGGCG CAGCACCTGCAGACTGCGCTCAGACACTTCCAGCATCGGCG < 41bp 0.711275453313138 0.290668671023275 0.014170259 0.0060764253 prediction 0.422550906626277 Functional Loss - GOSR2 ENSG00000108433;ENSG00000262633 CDS Human other chr17:45009481 chr17:45009485 nonsynonymous SNV 0.992 3 25 hm5C_associated_SNPs_88735 0 0 1 0 2 GOSR2 chr17:45009565 5'GT 45009565 Upstream 81bp
chr14 36302227 36302227 1 + G A UCEC 36302224 + 36302204 36302244 41 GTCAGGTGGATGCAAAACTACAAGAAGTCATAGCTGGAAAA GTCAGGTGGATGCAAAACTACAAAAAGTCATAGCTGGAAAA < 41bp 0.761265170905071 0.549990042157157 0.18264732 0.07443184 prediction 0.42255025749583 Functional Loss - BRMS1L ENSG00000100916 CDS Human protein_coding chr14:36302224 chr14:36302227 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_88736 0 0 0 0 2 BRMS1L chr14:36302184 3'AG 36302184 Downstream 44bp
chr14 36302227 36302227 1 + G A UCEC 36302224 + 36302204 36302244 41 GTCAGGTGGATGCAAAACTACAAGAAGTCATAGCTGGAAAA GTCAGGTGGATGCAAAACTACAAAAAGTCATAGCTGGAAAA < 41bp 0.761265170905071 0.549990042157157 0.18264732 0.07443184 prediction 0.42255025749583 Functional Loss - BRMS1L ENSG00000100916 CDS Human protein_coding chr14:36302224 chr14:36302227 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_88736 0 0 0 0 2 BRMS1L chr14:36302311 5'GT 36302311 Upstream 85bp
chr13 24895224 24895224 1 + G A HNSC 24895221 + 24895201 24895241 41 ACATGGCCCCAAGGGGCTTGCAGGGCCCATGGGAGAGAAGG ACATGGCCCCAAGGGGCTTGCAGAGCCCATGGGAGAGAAGG < 41bp 0.806487223451305 0.595213420541908 0.8321705 0.44813707 prediction 0.422547605818793 Functional Loss - C1QTNF9 ENSG00000240654 CDS Human protein_coding chr13:24895221 chr13:24895224 nonsynonymous SNV 0.307 5 24 hm5C_associated_SNPs_88737 0 0 0 0 1 C1QTNF9 chr13:24895134 3'AG 24895134 Downstream 91bp
chr11 65744203 65744203 1 + C T UCEC 65744201 + 65744181 65744221 41 GAGGAGAACATCGGCTGGAGCACGGTGAACCTGGACGAGGA GAGGAGAACATCGGCTGGAGCATGGTGAACCTGGACGAGGA < 41bp 0.840089647960673 0.62882104611767 0.8647962 0.8745816 prediction 0.422537203686008 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65744201 chr11:65744203 nonsynonymous SNV 0.415 1 23 hm5C_associated_SNPs_88741 0 0 1 0 2 SART1 chr11:65744127 3'AG 65744127 Downstream 77bp
chr11 65744203 65744203 1 + C T UCEC 65744201 + 65744181 65744221 41 GAGGAGAACATCGGCTGGAGCACGGTGAACCTGGACGAGGA GAGGAGAACATCGGCTGGAGCATGGTGAACCTGGACGAGGA < 41bp 0.840089647960673 0.62882104611767 0.8647962 0.8745816 prediction 0.422537203686008 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65744201 chr11:65744203 nonsynonymous SNV 0.415 1 23 hm5C_associated_SNPs_88741 0 0 1 0 2 SART1 chr11:65744237 5'GT 65744237 Upstream 35bp
chr19 14157295 14157295 1 + G T UCEC 14157293 + 14157273 14157313 41 CAGCAGCATCGCTGGGAGCACGGAGCTACTGGTGACCTGGC CAGCAGCATCGCTGGGAGCACGTAGCTACTGGTGACCTGGC < 41bp 0.711266656565207 0.354319188863722 0.8877051 0.34153205 prediction 0.422533313130414 Functional Loss - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14157293 chr19:14157295 stopgain 0.022 0 23 hm5C_associated_SNPs_88744 0 0 0 0 1 IL27RA chr19:14157242 3'AG 14157242 Downstream 54bp
chr10 93185103 93185103 1 + G A BRCA 93185100 + 93185080 93185120 41 AGTTTTATTTCAGCTGTTAGCCCGAAGAAAGAAGCTGCTGA AGTTTTATTTCAGCTGTTAGCCCAAAGAAAGAAGCTGCTGA < 41bp 0.755443391998037 0.544178436188671 0.4465518 0.32737166 prediction 0.422529911618732 Functional Loss - HECTD2 ENSG00000165338 CDS Human protein_coding chr10:93185100 chr10:93185103 synonymous SNV . 0 24 hm5C_associated_SNPs_88746 0 0 0 0 1 HECTD2 chr10:93185167 5'GT 93185167 Upstream 65bp
chr16 22826400 22826400 1 + G A UCEC 22826397 + 22826377 22826417 41 TCTTTGACAGGAACTACGGCCGCGGGCTGGATTGGTACAGG TCTTTGACAGGAACTACGGCCGCAGGCTGGATTGGTACAGG < 41bp 0.804430904045995 0.593167041810966 0.7312479 0.47284102 prediction 0.422527724470058 Functional Loss - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22826397 chr16:22826400 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_88747 0 0 0 0 1 HS3ST2 chr16:22826416 5'GT 22826416 Upstream 17bp
chr2 61389989 61389989 1 + G A TGCT 61389986 + 61389966 61390006 41 TTTGTTTTCAGTTTCCAAGGCAGGAAAGGTAAAGAGACAAA TTTGTTTTCAGTTTCCAAGGCAGAAAAGGTAAAGAGACAAA < 41bp 0.776691429618249 0.565429839698445 0.27700663 0.17254916 prediction 0.422523179839609 Functional Loss - C2orf74 ENSG00000237651 CDS Human protein_coding chr2:61389986 chr2:61389989 synonymous SNV . 0 24 hm5C_associated_SNPs_88749 0 0 0 0 1 C2orf74 chr2:61389977 3'AG 61389977 Downstream 13bp
chr20 33509154 33509154 1 + G T PRAD 33509152 + 33509132 33509172 41 GGCATAGCCGGGCATCCTTGCAGGTGTTAGGCACAGTGGGT GGCATAGCCGGGCATCCTTGCATGTGTTAGGCACAGTGGGT < 41bp 0.711251304698137 0.346065583854247 0.90930617 0.43873143 prediction 0.422502609396273 Functional Loss - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33509152 chr20:33509154 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_88755 0 0 1 0 1 ACSS2 chr20:33509133 3'AG 33509133 Downstream 22bp
chr14 23312519 23312519 1 + G A UCEC 23312516 + 23312496 23312536 41 AGCTGGGCCATGCCCTGGGGCTCGAGCATTCCAGTGACCCC AGCTGGGCCATGCCCTGGGGCTCAAGCATTCCAGTGACCCC < 41bp 0.806609204539014 0.595358569326199 0.031133235 0.015788376 prediction 0.422501270425628 Functional Loss - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23312516 chr14:23312519 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_88756 0 0 0 0 1 MMP14 chr14:23312466 3'AG 23312466 Downstream 54bp
chr7 139715641 139715641 1 + G A rs8192868 139715638 + 139715618 139715658 41 ACCCTGAGCACTGGCCAAGCCCGGAGACCTTCAACCCTGAA ACCCTGAGCACTGGCCAAGCCCGAAGACCTTCAACCCTGAA < 41bp 0.790267698414341 0.57901860769403 0.6920241 0.2285426 prediction 0.422498181440621 Functional Loss - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139715638 chr7:139715641 nonsynonymous SNV 0.083 3 24 hm5C_associated_SNPs_88757 0 0 0 0 1 TBXAS1 chr7:139715660 5'GT 139715660 Upstream 20bp
chr1 179600000 179600000 1 + G A SKCM 179599997 + 179599977 179600017 41 GACATTCTCCATGTTGAGTTCAGGAAAGGACACCAAGACTT GACATTCTCCATGTTGAGTTCAGAAAAGGACACCAAGACTT < 41bp 0.775441110284755 0.564192743339733 0.30106926 0.103429675 prediction 0.422496733890045 Functional Loss - TDRD5 ENSG00000162782 CDS Human protein_coding chr1:179599997 chr1:179600000 synonymous SNV . 0 24 hm5C_associated_SNPs_88758 0 0 0 0 2 TDRD5 chr1:179599902 3'AG 179599902 Downstream 99bp
chr1 179600000 179600000 1 + G A SKCM 179599997 + 179599977 179600017 41 GACATTCTCCATGTTGAGTTCAGGAAAGGACACCAAGACTT GACATTCTCCATGTTGAGTTCAGAAAAGGACACCAAGACTT < 41bp 0.775441110284755 0.564192743339733 0.30106926 0.103429675 prediction 0.422496733890045 Functional Loss - TDRD5 ENSG00000162782 CDS Human protein_coding chr1:179599997 chr1:179600000 synonymous SNV . 0 24 hm5C_associated_SNPs_88758 0 0 0 0 2 TDRD5 chr1:179600055 5'GT 179600055 Upstream 56bp
chr5 36629622 36629622 1 + T C UCEC 36629621 + 36629601 36629641 41 AGTCAAGTACTTCTCCTTTCCTGGGGAACTTCTGATGAGGA AGTCAAGTACTTCTCCTTTCCCGGGGAACTTCTGATGAGGA < 41bp 0.807344825240355 0.596100133231572 0.5725282 0.9303014 prediction 0.422489384017566 Functional Loss - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36629621 chr5:36629622 synonymous SNV . 0 22 hm5C_associated_SNPs_88760 0 0 1 0 2 SLC1A3 chr5:36629552 3'AG 36629552 Downstream 71bp
chr5 36629622 36629622 1 + T C UCEC 36629621 + 36629601 36629641 41 AGTCAAGTACTTCTCCTTTCCTGGGGAACTTCTGATGAGGA AGTCAAGTACTTCTCCTTTCCCGGGGAACTTCTGATGAGGA < 41bp 0.807344825240355 0.596100133231572 0.5725282 0.9303014 prediction 0.422489384017566 Functional Loss - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36629621 chr5:36629622 synonymous SNV . 0 22 hm5C_associated_SNPs_88760 0 0 1 0 2 SLC1A3 chr5:36629689 5'GT 36629689 Upstream 68bp
chr19 41257379 41257379 1 + G A BLCA 41257376 + 41257356 41257396 41 AACAACCTCAATGAGAAGATCAAGAAGGATGGTGAGTTCTC AACAACCTCAATGAGAAGATCAAAAAGGATGGTGAGTTCTC < 41bp 0.711243945216869 0.474225864119373 0.3032977 0.15378541 prediction 0.422487890433737 Functional Loss - SNRPA ENSG00000077312 CDS Human protein_coding chr19:41257376 chr19:41257379 synonymous SNV . 0 24 hm5C_associated_SNPs_88761 0 0 1 0 1 SNRPA chr19:41257386 5'GT 41257386 Upstream 8bp
chr11 118402921 118402921 1 + C T UCEC 118402918 + 118402898 118402938 41 AGACCTGGGCTGAGCGGGCACTTCGGGAGAATGAACGCCAC AGACCTGGGCTGAGCGGGCACTTTGGGAGAATGAACGCCAC < 41bp 0.727726472943623 0.516482850687298 0.5927846 0.42305788 prediction 0.422487244512652 Functional Loss - TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118402918 chr11:118402921 nonsynonymous SNV 0.052 4 24 hm5C_associated_SNPs_88762 0 0 1 0 1 TMEM25 chr11:118402865 3'AG 118402865 Downstream 57bp
chr10 121571370 121571370 1 + G A OV 121571367 + 121571347 121571387 41 AGGAAAATCAGAGAAGCCACCAGGAACTAATTAGCCAGCTC AGGAAAATCAGAGAAGCCACCAGAAACTAATTAGCCAGCTC < 41bp 0.76847127023587 0.557228328763225 0.8969853 0.84683615 prediction 0.42248588294529 Functional Loss - INPP5F ENSG00000198825 CDS Human protein_coding chr10:121571367 chr10:121571370 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_88763 0 0 0 0 1 INPP5F chr10:121571467 5'GT 121571467 Upstream 98bp
chr17 12812271 12812271 1 + G A SKCM 12812268 + 12812248 12812288 41 TGATGGAGGGGTCAGCTATCCTGGGAGATGACACACTTCTT TGATGGAGGGGTCAGCTATCCTGAGAGATGACACACTTCTT < 41bp 0.80444424668944 0.593202010168157 0.9017124 0.65990865 prediction 0.422484473042567 Functional Loss - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12812268 chr17:12812271 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_88764 0 0 0 0 2 ARHGAP44 chr17:12812214 3'AG 12812214 Downstream 58bp
chr17 12812271 12812271 1 + G A SKCM 12812268 + 12812248 12812288 41 TGATGGAGGGGTCAGCTATCCTGGGAGATGACACACTTCTT TGATGGAGGGGTCAGCTATCCTGAGAGATGACACACTTCTT < 41bp 0.80444424668944 0.593202010168157 0.9017124 0.65990865 prediction 0.422484473042567 Functional Loss - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12812268 chr17:12812271 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_88764 0 0 0 0 2 ARHGAP44 chr17:12812290 5'GT 12812290 Upstream 20bp
chr19 41884382 41884382 1 + C T UCEC 41884379 + 41884359 41884399 41 TTCCTGTCACCGCCTCTTCCCTCCGTGAGCGCTGGCCTGGG TTCCTGTCACCGCCTCTTCCCTCTGTGAGCGCTGGCCTGGG < 41bp 0.759140367565382 0.547899496309239 0.5354534 0.08823568 prediction 0.422481742512286 Functional Loss - TMEM91 ENSG00000142046;ENSG00000248098;ENSG00000255730 CDS Human other chr19:41884379 chr19:41884382 synonymous SNV . 0 24 hm5C_associated_SNPs_88767 0 0 1 0 1 TMEM91 chr19:41884424 5'GT 41884424 Upstream 43bp
chr19 47777687 47777687 1 + G T rs529552546 47777684 + 47777664 47777704 41 GCGGGAGGAGAGCGGGGATTCCGGAACTAGAGTGTGGGAGC GCGGGAGGAGAGCGGGGATTCCGTAACTAGAGTGTGGGAGC < 41bp 0.91135399193865 0.700114892848538 0.9064388 0.8474203 prediction 0.422478198180225 Functional Loss - INAFM1 ENSG00000257704 upstream Human protein_coding chr19:47777684 chr19:47777687 . . 0 24 hm5C_associated_SNPs_88769 0 0 0 0 1 INAFM1 chr19:47777755 5'GT 47777755 Upstream 69bp
chr2 103317575 103317575 1 + G A SKCM 103317572 + 103317552 103317592 41 ATCTGCGGAAGCTTTTGATTCGGGAAAACCAACCAAAGTCA ATCTGCGGAAGCTTTTGATTCGGAAAAACCAACCAAAGTCA < 41bp 0.782443406069206 0.571204688877788 0.6995094 0.1432172 prediction 0.422477434382836 Functional Loss - SLC9A2 ENSG00000115616 CDS Human protein_coding chr2:103317572 chr2:103317575 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_88770 0 0 0 0 1 SLC9A2 chr2:103317529 3'AG 103317529 Downstream 47bp
chr20 29628282 29628282 1 + G A BLCA 29628279 + 29628259 29628299 41 CTTTATTAGATGCAATGAAGCAGGGGACATAGAAGCAAAAA CTTTATTAGATGCAATGAAGCAGAGGACATAGAAGCAAAAA < 41bp 0.753787855441794 0.542549342220683 0.92015815 0.5968413 prediction 0.422477026442222 Functional Loss - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29628279 chr20:29628282 nonsynonymous SNV 0.956 1 24 hm5C_associated_SNPs_88771 0 0 0 1 2 FRG1BP;FRG1DP chr20:29628227 3'AG 29628227 Downstream 56bp
chr20 29628282 29628282 1 + G A BLCA 29628279 + 29628259 29628299 41 CTTTATTAGATGCAATGAAGCAGGGGACATAGAAGCAAAAA CTTTATTAGATGCAATGAAGCAGAGGACATAGAAGCAAAAA < 41bp 0.753787855441794 0.542549342220683 0.92015815 0.5968413 prediction 0.422477026442222 Functional Loss - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29628279 chr20:29628282 nonsynonymous SNV 0.956 1 24 hm5C_associated_SNPs_88771 0 0 0 1 2 FRG1BP;FRG1DP chr20:29628331 5'GT 29628331 Upstream 50bp
chr14 105930441 105930441 1 + G T HNSC 105930439 + 105930419 105930459 41 TGGTGAACGGCACGGGGGCGCCGGGCCAGAGCCCTGGGGCT TGGTGAACGGCACGGGGGCGCCTGGCCAGAGCCCTGGGGCT < 41bp 0.711238154588211 0.338006202344509 0.8768029 0.5792875 prediction 0.422476309176421 Functional Loss - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105930439 chr14:105930441 synonymous SNV . 0 23 hm5C_associated_SNPs_88772 0 0 1 0 2 MTA1 chr14:105930369 3'AG 105930369 Downstream 73bp
chr14 105930441 105930441 1 + G T HNSC 105930439 + 105930419 105930459 41 TGGTGAACGGCACGGGGGCGCCGGGCCAGAGCCCTGGGGCT TGGTGAACGGCACGGGGGCGCCTGGCCAGAGCCCTGGGGCT < 41bp 0.711238154588211 0.338006202344509 0.8768029 0.5792875 prediction 0.422476309176421 Functional Loss - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105930439 chr14:105930441 synonymous SNV . 0 23 hm5C_associated_SNPs_88772 0 0 1 0 2 MTA1 chr14:105930484 5'GT 105930484 Upstream 44bp
chr17 47236551 47236551 1 + G A rs114986987 47236548 + 47236528 47236568 41 CAGCACGTGACATACACCAGCACGGGGTACCAGCACCAGAA CAGCACGTGACATACACCAGCACAGGGTACCAGCACCAGAA < 41bp 0.711231390039719 0.459910615686671 0.8473188 0.23466736 prediction 0.422462780079438 Functional Loss - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47236548 chr17:47236551 synonymous SNV . 0 24 hm5C_associated_SNPs_88779 0 0 0 0 1 B4GALNT2 chr17:47236579 5'GT 47236579 Upstream 29bp
chr20 55940480 55940480 1 + A T LAML 55940478 + 55940458 55940498 41 TGTGGGACCTCAGCAGTAACCAAGCGATACAGATCGCACAG TGTGGGACCTCAGCAGTAACCATGCGATACAGATCGCACAG < 41bp 0.717390915222925 0.506162475821188 0.8896823 0.43134606 prediction 0.422456878803474 Functional Loss - RAE1 ENSG00000101146 CDS Human protein_coding chr20:55940478 chr20:55940480 nonsynonymous SNV 0.938 4 23 hm5C_associated_SNPs_88781 0 0 1 0 2 RAE1 chr20:55940412 3'AG 55940412 Downstream 69bp
chr20 55940480 55940480 1 + A T LAML 55940478 + 55940458 55940498 41 TGTGGGACCTCAGCAGTAACCAAGCGATACAGATCGCACAG TGTGGGACCTCAGCAGTAACCATGCGATACAGATCGCACAG < 41bp 0.717390915222925 0.506162475821188 0.8896823 0.43134606 prediction 0.422456878803474 Functional Loss - RAE1 ENSG00000101146 CDS Human protein_coding chr20:55940478 chr20:55940480 nonsynonymous SNV 0.938 4 23 hm5C_associated_SNPs_88781 0 0 1 0 2 RAE1 chr20:55940498 5'GT 55940498 Upstream 19bp
chr11 46338965 46338965 1 + C T rs77924634 46338963 + 46338943 46338983 41 GCTCCCTCGTGCCCTGCCTTCCCGAGTTCTCCTCCGGCTCC GCTCCCTCGTGCCCTGCCTTCCTGAGTTCTCCTCCGGCTCC < 41bp 0.863425282209986 0.652199759197022 0.21703985 0.18648165 prediction 0.422451046025929 Functional Loss - CREB3L1 ENSG00000157613 CDS Human protein_coding chr11:46338963 chr11:46338965 synonymous SNV . 0 23 hm5C_associated_SNPs_88782 0 0 1 0 1 CREB3L1 chr11:46338912 3'AG 46338912 Downstream 54bp
chr19 45910452 45910452 1 + G T SARC 45910448 + 45910428 45910468 41 GGCGCTGACGGGTCCAGATACGGAGCTGTGGCTTATTCAGG GGCGCTGACGGGTCCAGATACGGATCTGTGGCTTATTCAGG < 41bp 0.711221893664046 0.492548592790471 0.9082893 0.47851253 prediction 0.422443787328092 Functional Loss - CD3EAP ENSG00000117877 CDS Human protein_coding chr19:45910448 chr19:45910452 nonsynonymous SNV 0.576 4 25 hm5C_associated_SNPs_88785 0 0 1 0 1 CD3EAP chr19:45910493 5'GT 45910493 Upstream 42bp
chr19 57640096 57640096 1 + G A SKCM 57640093 + 57640073 57640113 41 CCAAATTTGGAGCCAGAAGACTGGGATGACTAAGCTGAAAG CCAAATTTGGAGCCAGAAGACTGAGATGACTAAGCTGAAAG < 41bp 0.761815306076571 0.550593607831342 0.3318839 0.15423435 prediction 0.422443396490459 Functional Loss - USP29 ENSG00000131864 CDS Human protein_coding chr19:57640093 chr19:57640096 nonsynonymous SNV 0.015 3 24 hm5C_associated_SNPs_88786 0 0 0 0 1 USP29 chr19:57640028 3'AG 57640028 Downstream 69bp
chr7 77227175 77227175 1 + G A UCEC 77227172 + 77227152 77227192 41 TATTTAGGAGGATGAACAAGCAAGAACAGACTACTTCATCA TATTTAGGAGGATGAACAAGCAAAAACAGACTACTTCATCA < 41bp 0.733740002147447 0.522520032802154 0.33677962 0.25004524 prediction 0.422439938690586 Functional Loss - PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77227172 chr7:77227175 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_88788 0 0 1 0 2 PTPN12 chr7:77227159 3'AG 77227159 Downstream 17bp
chr7 77227175 77227175 1 + G A UCEC 77227172 + 77227152 77227192 41 TATTTAGGAGGATGAACAAGCAAGAACAGACTACTTCATCA TATTTAGGAGGATGAACAAGCAAAAACAGACTACTTCATCA < 41bp 0.733740002147447 0.522520032802154 0.33677962 0.25004524 prediction 0.422439938690586 Functional Loss - PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77227172 chr7:77227175 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_88788 0 0 1 0 2 PTPN12 chr7:77227218 5'GT 77227218 Upstream 44bp
chr10 18280101 18280101 1 + G T LUAD 18280098 + 18280078 18280118 41 AGGTTCTTGGTTTACATAAGCAGGAAGCCCCAGAATTTGGG AGGTTCTTGGTTTACATAAGCAGTAAGCCCCAGAATTTGGG < 41bp 0.711218334777727 0.318672874739277 0.87415266 0.41554514 prediction 0.422436669555455 Functional Loss - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18280098 chr10:18280101 stopgain 0.991 0 24 hm5C_associated_SNPs_88790 0 0 0 0 1 SLC39A12 chr10:18280080 3'AG 18280080 Downstream 22bp
chr10 18280102 18280102 1 + A C UCEC 18280098 + 18280078 18280118 41 AGGTTCTTGGTTTACATAAGCAGGAAGCCCCAGAATTTGGG AGGTTCTTGGTTTACATAAGCAGGCAGCCCCAGAATTTGGG < 41bp 0.711218334777727 0.307108634435482 0.87415266 0.8758991 prediction 0.422436669555455 Functional Loss - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18280098 chr10:18280102 nonsynonymous SNV 0.991 0 25 hm5C_associated_SNPs_88791 0 0 0 0 1 SLC39A12 chr10:18280080 3'AG 18280080 Downstream 23bp
chr21 47412704 47412704 1 + C T READ 47412702 + 47412682 47412722 41 ACCACGGGGGACCCCAGGCACGCGGGGACCAAGAGGAGACC ACCACGGGGGACCCCAGGCACGTGGGGACCAAGAGGAGACC < 41bp 0.824273246028061 0.613056721530958 0.5531143 0.52430123 prediction 0.422433048994205 Functional Loss - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47412702 chr21:47412704 nonsynonymous SNV 0.119 5 23 hm5C_associated_SNPs_88793 0 0 1 0 1 COL6A1 chr21:47412724 5'GT 47412724 Upstream 21bp
chr16 58287931 58287931 1 + G T LUSC 58287928 + 58287908 58287948 41 GGCAGGCGTAGATCCAAATCCCGGACAGGTATGGACCGTGG GGCAGGCGTAGATCCAAATCCCGTACAGGTATGGACCGTGG < 41bp 0.711216175374445 0.315402215397675 0.14642349 0.055148035 prediction 0.42243235074889 Functional Loss - CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58287928 chr16:58287931 synonymous SNV . 0 24 hm5C_associated_SNPs_88794 0 0 1 0 1 CCDC113 chr16:58287902 3'AG 58287902 Downstream 30bp
chr9 117086345 117086345 1 + A T LUAD 117086341 + 117086321 117086361 41 CCACCTACCTGAATGTCCAGCGGGAAAATGGGACCATCTCC CCACCTACCTGAATGTCCAGCGGGTAAATGGGACCATCTCC < 41bp 0.887241523809463 0.676028245306701 0.676818 0.38246968 prediction 0.422426557005524 Functional Loss - ORM1 ENSG00000229314 CDS Human protein_coding chr9:117086341 chr9:117086345 nonsynonymous SNV 0.777 1 25 hm5C_associated_SNPs_88795 0 0 1 0 2 ORM1 chr9:117086298 3'AG 117086298 Downstream 48bp
chr9 117086345 117086345 1 + A T LUAD 117086341 + 117086321 117086361 41 CCACCTACCTGAATGTCCAGCGGGAAAATGGGACCATCTCC CCACCTACCTGAATGTCCAGCGGGTAAATGGGACCATCTCC < 41bp 0.887241523809463 0.676028245306701 0.676818 0.38246968 prediction 0.422426557005524 Functional Loss - ORM1 ENSG00000229314 CDS Human protein_coding chr9:117086341 chr9:117086345 nonsynonymous SNV 0.777 1 25 hm5C_associated_SNPs_88795 0 0 1 0 2 ORM1 chr9:117086368 5'GT 117086368 Upstream 24bp
chr1 244868944 244868944 1 + G A BLCA 244868941 + 244868921 244868961 41 CCCTTTCTACAGAGTTGCCTCCCGAAGGAGTGGCTCACGCC CCCTTTCTACAGAGTTGCCTCCCAAAGGAGTGGCTCACGCC < 41bp 0.793421903189095 0.582213044304977 0.32609984 0.088704735 prediction 0.422417717768236 Functional Loss - DESI2 ENSG00000121644 CDS Human protein_coding chr1:244868941 chr1:244868944 synonymous SNV . 0 24 hm5C_associated_SNPs_88798 0 0 1 0 1 DESI2 chr1:244868858 3'AG 244868858 Downstream 87bp
chr1 111437625 111437625 1 + G C LUAD 111437621 + 111437601 111437641 41 AGGGTCTGACCGACAGCATCCACCGTTACCACTCAGACAAT AGGGTCTGACCGACAGCATCCACCCTTACCACTCAGACAAT < 41bp 0.711203116339646 0.412179372883731 0.0033302307 0.004581094 prediction 0.422406232679292 Functional Loss - CD53 ENSG00000143119 CDS Human protein_coding chr1:111437621 chr1:111437625 nonsynonymous SNV 0.011 1 25 hm5C_associated_SNPs_88801 0 0 1 0 2 CD53 chr1:111437582 3'AG 111437582 Downstream 44bp
chr1 111437625 111437625 1 + G C LUAD 111437621 + 111437601 111437641 41 AGGGTCTGACCGACAGCATCCACCGTTACCACTCAGACAAT AGGGTCTGACCGACAGCATCCACCCTTACCACTCAGACAAT < 41bp 0.711203116339646 0.412179372883731 0.0033302307 0.004581094 prediction 0.422406232679292 Functional Loss - CD53 ENSG00000143119 CDS Human protein_coding chr1:111437621 chr1:111437625 nonsynonymous SNV 0.011 1 25 hm5C_associated_SNPs_88801 0 0 1 0 2 CD53 chr1:111437677 5'GT 111437677 Upstream 53bp
chr1 111437623 111437623 1 + C T UCEC 111437621 + 111437601 111437641 41 AGGGTCTGACCGACAGCATCCACCGTTACCACTCAGACAAT AGGGTCTGACCGACAGCATCCATCGTTACCACTCAGACAAT < 41bp 0.711203116339646 0.430019140859808 0.0033302307 0.0037272573 prediction 0.422406232679292 Functional Loss - CD53 ENSG00000143119 CDS Human protein_coding chr1:111437621 chr1:111437623 synonymous SNV . 0 23 hm5C_associated_SNPs_88802 0 0 1 0 2 CD53 chr1:111437582 3'AG 111437582 Downstream 42bp
chr1 111437623 111437623 1 + C T UCEC 111437621 + 111437601 111437641 41 AGGGTCTGACCGACAGCATCCACCGTTACCACTCAGACAAT AGGGTCTGACCGACAGCATCCATCGTTACCACTCAGACAAT < 41bp 0.711203116339646 0.430019140859808 0.0033302307 0.0037272573 prediction 0.422406232679292 Functional Loss - CD53 ENSG00000143119 CDS Human protein_coding chr1:111437621 chr1:111437623 synonymous SNV . 0 23 hm5C_associated_SNPs_88802 0 0 1 0 2 CD53 chr1:111437677 5'GT 111437677 Upstream 55bp
chr10 6263490 6263490 1 + G A rs534357183 6263487 + 6263467 6263507 41 AAGGCGCTCAATGAGATCGACGCGGTGAGTCCTGGGAGGCG AAGGCGCTCAATGAGATCGACGCAGTGAGTCCTGGGAGGCG < 41bp 0.711199276902858 0.464553925067196 0.41257465 0.29667377 prediction 0.422398553805716 Functional Loss - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6263487 chr10:6263490 synonymous SNV . 0 24 hm5C_associated_SNPs_88804 0 0 0 0 1 PFKFB3 chr10:6263490 5'GT 6263490 Upstream 1bp
chr3 111304206 111304206 1 + C T UCEC 111304204 + 111304184 111304224 41 CCTGTGATTGTGGAAAATAACTCCACGGATGTCTTGGTAGA CCTGTGATTGTGGAAAATAACTTCACGGATGTCTTGGTAGA < 41bp 0.711194163773008 0.402833227434927 0.9139979 0.052437544 prediction 0.422388327546016 Functional Loss - CD96 ENSG00000153283 CDS Human protein_coding chr3:111304204 chr3:111304206 nonsynonymous SNV 0.024 1 23 hm5C_associated_SNPs_88806 0 0 0 0 2 CD96 chr3:111304170 3'AG 111304170 Downstream 37bp
chr3 111304206 111304206 1 + C T UCEC 111304204 + 111304184 111304224 41 CCTGTGATTGTGGAAAATAACTCCACGGATGTCTTGGTAGA CCTGTGATTGTGGAAAATAACTTCACGGATGTCTTGGTAGA < 41bp 0.711194163773008 0.402833227434927 0.9139979 0.052437544 prediction 0.422388327546016 Functional Loss - CD96 ENSG00000153283 CDS Human protein_coding chr3:111304204 chr3:111304206 nonsynonymous SNV 0.024 1 23 hm5C_associated_SNPs_88806 0 0 0 0 2 CD96 chr3:111304225 5'GT 111304225 Upstream 20bp
chr15 48500249 48500249 1 + G A HNSC 48500246 + 48500226 48500266 41 AACACCATGGATGCCGTTCCCAAGATAGAGTACTATCGTAA AACACCATGGATGCCGTTCCCAAAATAGAGTACTATCGTAA < 41bp 0.711184056888304 0.495879601919338 0.55599385 0.2779351 prediction 0.422368113776609 Functional Loss - SLC12A1 ENSG00000074803 CDS Human protein_coding chr15:48500246 chr15:48500249 synonymous SNV . 0 24 hm5C_associated_SNPs_88811 0 0 0 0 1 SLC12A1 chr15:48500336 5'GT 48500336 Upstream 88bp
chr11 13399936 13399936 1 + G A SKCM 13399933 + 13399913 13399953 41 CCAGGGATTCCAGGGGGAACCCGGGCTGGGGCAGGAAAAAT CCAGGGATTCCAGGGGGAACCCGAGCTGGGGCAGGAAAAAT < 41bp 0.776679827978033 0.565497876448121 0.9047045 0.88607717 prediction 0.422363903059823 Functional Loss - ARNTL ENSG00000133794 CDS Human protein_coding chr11:13399933 chr11:13399936 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_88813 0 0 0 0 1 ARNTL chr11:13399884 3'AG 13399884 Downstream 53bp
chr15 39884972 39884972 1 + C T SKCM 39884970 + 39884950 39884990 41 ATGACAAGGACAACTGCAGACTCGTGCCCAATCCCGACCAG ATGACAAGGACAACTGCAGACTTGTGCCCAATCCCGACCAG < 41bp 0.711181095459583 0.442525066838336 0.08962503 0.1274409 prediction 0.422362190919165 Functional Loss - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39884970 chr15:39884972 synonymous SNV . 0 23 hm5C_associated_SNPs_88814 0 0 1 0 1 THBS1 chr15:39885003 5'GT 39885003 Upstream 32bp
chr2 207655378 207655378 1 + C T GBM 207655375 + 207655355 207655395 41 GATTCCTTGCTATGAAAATGCGGCATTTGAATGCAATGGGT GATTCCTTGCTATGAAAATGCGGTATTTGAATGCAATGGGT < 41bp 0.729115694739031 0.517934623791809 0.22290105 0.31704968 prediction 0.422362141894445 Functional Loss - FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207655375 chr2:207655378 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_88815 0 0 1 0 2 FASTKD2 chr2:207655296 3'AG 207655296 Downstream 83bp
chr2 207655378 207655378 1 + C T GBM 207655375 + 207655355 207655395 41 GATTCCTTGCTATGAAAATGCGGCATTTGAATGCAATGGGT GATTCCTTGCTATGAAAATGCGGTATTTGAATGCAATGGGT < 41bp 0.729115694739031 0.517934623791809 0.22290105 0.31704968 prediction 0.422362141894445 Functional Loss - FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207655375 chr2:207655378 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_88815 0 0 1 0 2 FASTKD2 chr2:207655410 5'GT 207655410 Upstream 33bp
chr2 63834045 63834045 1 + G A UCEC 63834042 + 63834022 63834062 41 TCTCCCTATTAATGATTTCTCACGTGAGAAGATGGATCTTA TCTCCCTATTAATGATTTCTCACATGAGAAGATGGATCTTA < 41bp 0.726743205931421 0.515563886949664 0.23922822 0.10952109 prediction 0.422358637963514 Functional Loss - MDH1 ENSG00000014641 CDS Human protein_coding chr2:63834042 chr2:63834045 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_88816 0 0 1 0 1 MDH1 chr2:63833996 3'AG 63833996 Downstream 50bp
chr17 32959784 32959784 1 + C T UCEC 32959782 + 32959762 32959802 41 GAGTCTCGAGGGTCCATGAACGCCAGGGTCACCTTCCGCTA GAGTCTCGAGGGTCCATGAACGTCAGGGTCACCTTCCGCTA < 41bp 0.86547817287092 0.654301206872138 0.5808465 0.46539813 prediction 0.422353931997564 Functional Loss - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32959782 chr17:32959784 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_88819 0 0 1 0 1 TMEM132E chr17:32959723 3'AG 32959723 Downstream 62bp
chr3 45588912 45588912 1 + G A rs34965084 45588909 + 45588889 45588929 41 CCCGGGACCAGGACAAAGTCCACGAATTTGTTCTTCAAAGC CCCGGGACCAGGACAAAGTCCACAAATTTGTTCTTCAAAGC < 41bp 0.711174299926101 0.472303157939195 0.06836307 0.06127149 prediction 0.422348599852202 Functional Loss - LARS2 ENSG00000011376 CDS Human protein_coding chr3:45588909 chr3:45588912 nonsynonymous SNV 0.764 1 24 hm5C_associated_SNPs_88821 1 0 1 0 1 LARS2 chr3:45588843 3'AG 45588843 Downstream 70bp
chr5 176795796 176795796 1 + G A rs183120601 176795793 + 176795773 176795813 41 AGTACTGCTGTGTGTACCTGCCCGATGGCACAGCCTCCTTG AGTACTGCTGTGTGTACCTGCCCAATGGCACAGCCTCCTTG < 41bp 0.820779252328119 0.609605303702454 0.16903824 0.35141242 prediction 0.422347897251331 Functional Loss - RGS14 ENSG00000169220 CDS Human protein_coding chr5:176795793 chr5:176795796 nonsynonymous SNV 0.095 4 24 hm5C_associated_SNPs_88822 0 0 0 0 1 RGS14 chr5:176795718 3'AG 176795718 Downstream 79bp
chr16 31368588 31368588 1 + C T GBM 31368585 + 31368565 31368605 41 TGTCCCCAGGCCTGCGGCCCCACCGTGCACCACGAGTGCGG TGTCCCCAGGCCTGCGGCCCCACTGTGCACCACGAGTGCGG < 41bp 0.719020184670284 0.507847736018576 0.059478045 0.033812582 prediction 0.422344897303417 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31368585 chr16:31368588 synonymous SNV . 0 24 hm5C_associated_SNPs_88823 0 0 0 0 1 ITGAX chr16:31368574 3'AG 31368574 Downstream 15bp
chr1 158263018 158263018 1 + G A SKCM 158263015 + 158262995 158263035 41 TGTGCAGGACACCACTTTTCCATGAATTGGATTGCCTTGGT TGTGCAGGACACCACTTTTCCATAAATTGGATTGCCTTGGT < 41bp 0.711168505016621 0.479519959770292 0.19026804 0.1961155 prediction 0.422337010033242 Functional Loss - CD1C ENSG00000158481 CDS Human protein_coding chr1:158263015 chr1:158263018 nonsynonymous SNV 0.041 0 24 hm5C_associated_SNPs_88826 0 0 0 0 2 CD1C chr1:158263002 3'AG 158263002 Downstream 17bp
chr1 158263018 158263018 1 + G A SKCM 158263015 + 158262995 158263035 41 TGTGCAGGACACCACTTTTCCATGAATTGGATTGCCTTGGT TGTGCAGGACACCACTTTTCCATAAATTGGATTGCCTTGGT < 41bp 0.711168505016621 0.479519959770292 0.19026804 0.1961155 prediction 0.422337010033242 Functional Loss - CD1C ENSG00000158481 CDS Human protein_coding chr1:158263015 chr1:158263018 nonsynonymous SNV 0.041 0 24 hm5C_associated_SNPs_88826 0 0 0 0 2 CD1C chr1:158263092 5'GT 158263092 Upstream 75bp
chr3 48327757 48327757 1 + G A UCEC 48327754 + 48327734 48327774 41 AGTTCTGGAACTGGGAAGTCCAAGATCAGGGCTCCTGCCCC AGTTCTGGAACTGGGAAGTCCAAAATCAGGGCTCCTGCCCC < 41bp 0.711164659191201 0.493174051308783 0.2238394 0.27409476 prediction 0.422329318382402 Functional Loss - ZNF589;FCF1P2 ENSG00000164048 CDS Human protein_coding chr3:48327754 chr3:48327757 nonsynonymous SNV 0.100 0 24 hm5C_associated_SNPs_88830 0 0 0 0 1 ZNF589;FCF1P2 chr3:48327736 3'AG 48327736 Downstream 22bp
chr17 48819031 48819031 1 + C T UCEC 48819028 + 48819008 48819048 41 TCTTCAATAGGCCGCTGGCCCAACAGGCAAAAATGAAGAAA TCTTCAATAGGCCGCTGGCCCAATAGGCAAAAATGAAGAAA < 41bp 0.747580831067174 0.536418621885319 0.111830056 0.03303173 prediction 0.42232441836371 Functional Loss - LUC7L3 ENSG00000108848 CDS Human protein_coding chr17:48819028 chr17:48819031 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_88831 0 0 1 0 2 LUC7L3 chr17:48819018 3'AG 48819018 Downstream 14bp
chr17 48819031 48819031 1 + C T UCEC 48819028 + 48819008 48819048 41 TCTTCAATAGGCCGCTGGCCCAACAGGCAAAAATGAAGAAA TCTTCAATAGGCCGCTGGCCCAATAGGCAAAAATGAAGAAA < 41bp 0.747580831067174 0.536418621885319 0.111830056 0.03303173 prediction 0.42232441836371 Functional Loss - LUC7L3 ENSG00000108848 CDS Human protein_coding chr17:48819028 chr17:48819031 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_88831 0 0 1 0 2 LUC7L3 chr17:48819092 5'GT 48819092 Upstream 62bp
chr7 21516784 21516784 1 + C T SARC 21516782 + 21516762 21516802 41 GTTGGAGGAATTGCTAATGCCACGATAGGTGCTGTTAGTCC GTTGGAGGAATTGCTAATGCCATGATAGGTGCTGTTAGTCC < 41bp 0.878053201622305 0.666893653974204 0.16555214 0.45468417 prediction 0.422319095296203 Functional Loss - SP4 ENSG00000105866 CDS Human protein_coding chr7:21516782 chr7:21516784 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_88832 0 0 0 0 1 SP4 chr7:21516697 3'AG 21516697 Downstream 88bp
chr1 160385859 160385859 1 + C T COAD 160385856 + 160385836 160385876 41 TGGCTTCCTGCCGCAGGGACCGCCGGGACCGACACCGCTCT TGGCTTCCTGCCGCAGGGACCGCTGGGACCGACACCGCTCT < 41bp 0.725144792617924 0.513987948206978 0.45348287 0.32607007 prediction 0.422313688821893 Functional Loss - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160385856 chr1:160385859 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_88835 0 0 0 0 1 VANGL2 chr1:160385852 3'AG 160385852 Downstream 8bp
chrX 150889973 150889973 1 + G C BRCA 150889972 + 150889952 150889992 41 GCATACGTTTCCATTATGATCGGTAAGAGCTGAGGGTCTGT GCATACGTTTCCATTATGATCCGTAAGAGCTGAGGGTCTGT < 41bp 0.711153446758626 0.398167073159532 0.47691533 0.17038405 prediction 0.422306893517252 Functional Loss - FATE1 ENSG00000147378 CDS Human protein_coding chrX:150889972 chrX:150889973 nonsynonymous SNV 0.789 1 22 hm5C_associated_SNPs_88837 0 0 0 0 1 FATE1 chrX:150889973 5'GT 150889973 Upstream 1bp
chr17 65733720 65733720 1 + G T UCEC 65733718 + 65733698 65733738 41 TGTCATTGGGGACACAGTAACAGGACTTCTGGAAAGGTGTA TGTCATTGGGGACACAGTAACATGACTTCTGGAAAGGTGTA < 41bp 0.904132690538633 0.692985675780684 0.71527076 0.23378333 prediction 0.422294029515898 Functional Loss - NOL11 ENSG00000130935 CDS Human protein_coding chr17:65733718 chr17:65733720 stopgain 0.520 0 23 hm5C_associated_SNPs_88839 0 0 1 0 2 NOL11 chr17:65733624 3'AG 65733624 Downstream 97bp
chr17 65733720 65733720 1 + G T UCEC 65733718 + 65733698 65733738 41 TGTCATTGGGGACACAGTAACAGGACTTCTGGAAAGGTGTA TGTCATTGGGGACACAGTAACATGACTTCTGGAAAGGTGTA < 41bp 0.904132690538633 0.692985675780684 0.71527076 0.23378333 prediction 0.422294029515898 Functional Loss - NOL11 ENSG00000130935 CDS Human protein_coding chr17:65733718 chr17:65733720 stopgain 0.520 0 23 hm5C_associated_SNPs_88839 0 0 1 0 2 NOL11 chr17:65733808 5'GT 65733808 Upstream 89bp
chr1 179319496 179319496 1 + C T COAD 179319494 + 179319474 179319514 41 TTGCTGTATCTGCTGTAGTACACGAATATGCCTTGGCTGTT TTGCTGTATCTGCTGTAGTACATGAATATGCCTTGGCTGTT < 41bp 0.711145428337035 0.418275146202488 0.13536224 0.2026273 prediction 0.42229085667407 Functional Loss - SOAT1 ENSG00000057252 CDS Human protein_coding chr1:179319494 chr1:179319496 synonymous SNV . 0 23 hm5C_associated_SNPs_88841 0 0 1 0 2 SOAT1 chr1:179319431 3'AG 179319431 Downstream 66bp
chr1 179319496 179319496 1 + C T COAD 179319494 + 179319474 179319514 41 TTGCTGTATCTGCTGTAGTACACGAATATGCCTTGGCTGTT TTGCTGTATCTGCTGTAGTACATGAATATGCCTTGGCTGTT < 41bp 0.711145428337035 0.418275146202488 0.13536224 0.2026273 prediction 0.42229085667407 Functional Loss - SOAT1 ENSG00000057252 CDS Human protein_coding chr1:179319494 chr1:179319496 synonymous SNV . 0 23 hm5C_associated_SNPs_88841 0 0 1 0 2 SOAT1 chr1:179319566 5'GT 179319566 Upstream 71bp
chr1 179319497 179319497 1 + G A HNSC 179319494 + 179319474 179319514 41 TTGCTGTATCTGCTGTAGTACACGAATATGCCTTGGCTGTT TTGCTGTATCTGCTGTAGTACACAAATATGCCTTGGCTGTT < 41bp 0.711145428337035 0.47350655594038 0.13536224 0.06539777 prediction 0.42229085667407 Functional Loss - SOAT1 ENSG00000057252 CDS Human protein_coding chr1:179319494 chr1:179319497 nonsynonymous SNV 0.974 4 24 hm5C_associated_SNPs_88842 0 0 1 0 2 SOAT1 chr1:179319431 3'AG 179319431 Downstream 67bp
chr1 179319497 179319497 1 + G A HNSC 179319494 + 179319474 179319514 41 TTGCTGTATCTGCTGTAGTACACGAATATGCCTTGGCTGTT TTGCTGTATCTGCTGTAGTACACAAATATGCCTTGGCTGTT < 41bp 0.711145428337035 0.47350655594038 0.13536224 0.06539777 prediction 0.42229085667407 Functional Loss - SOAT1 ENSG00000057252 CDS Human protein_coding chr1:179319494 chr1:179319497 nonsynonymous SNV 0.974 4 24 hm5C_associated_SNPs_88842 0 0 1 0 2 SOAT1 chr1:179319566 5'GT 179319566 Upstream 70bp
chr10 134912201 134912201 1 + G A COAD 134912198 + 134912178 134912218 41 CTCCTGAATTTCTGCTTCCACGCGGCCCTGACCTTCACTGT CTCCTGAATTTCTGCTTCCACGCAGCCCTGACCTTCACTGT < 41bp 0.711144693750152 0.455432317478326 0.19541949 0.035428107 prediction 0.422289387500305 Functional Loss - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134912198 chr10:134912201 synonymous SNV . 0 24 hm5C_associated_SNPs_88843 0 0 0 0 2 ADGRA1 chr10:134912144 3'AG 134912144 Downstream 58bp
chr10 134912201 134912201 1 + G A COAD 134912198 + 134912178 134912218 41 CTCCTGAATTTCTGCTTCCACGCGGCCCTGACCTTCACTGT CTCCTGAATTTCTGCTTCCACGCAGCCCTGACCTTCACTGT < 41bp 0.711144693750152 0.455432317478326 0.19541949 0.035428107 prediction 0.422289387500305 Functional Loss - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134912198 chr10:134912201 synonymous SNV . 0 24 hm5C_associated_SNPs_88843 0 0 0 0 2 ADGRA1 chr10:134912267 5'GT 134912267 Upstream 67bp
chr10 134912200 134912200 1 + C T UCEC 134912198 + 134912178 134912218 41 CTCCTGAATTTCTGCTTCCACGCGGCCCTGACCTTCACTGT CTCCTGAATTTCTGCTTCCACGTGGCCCTGACCTTCACTGT < 41bp 0.711144693750152 0.437689114836314 0.19541949 0.2950532 prediction 0.422289387500305 Functional Loss - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134912198 chr10:134912200 nonsynonymous SNV 0.981 0 23 hm5C_associated_SNPs_88844 0 0 0 0 2 ADGRA1 chr10:134912144 3'AG 134912144 Downstream 57bp
chr10 134912200 134912200 1 + C T UCEC 134912198 + 134912178 134912218 41 CTCCTGAATTTCTGCTTCCACGCGGCCCTGACCTTCACTGT CTCCTGAATTTCTGCTTCCACGTGGCCCTGACCTTCACTGT < 41bp 0.711144693750152 0.437689114836314 0.19541949 0.2950532 prediction 0.422289387500305 Functional Loss - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134912198 chr10:134912200 nonsynonymous SNV 0.981 0 23 hm5C_associated_SNPs_88844 0 0 0 0 2 ADGRA1 chr10:134912267 5'GT 134912267 Upstream 68bp
chr7 143029875 143029875 1 + C T STAD 143029873 + 143029853 143029893 41 AACAATACATGGGTGAAACACGCGGGTGATCCTGAGAGCCT AACAATACATGGGTGAAACACGTGGGTGATCCTGAGAGCCT < 41bp 0.843796045523464 0.63265165846224 0.86827624 0.655004 prediction 0.422288774122447 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143029873 chr7:143029875 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_88845 0 0 0 0 2 CLCN1 chr7:143029817 3'AG 143029817 Downstream 59bp
chr7 143029875 143029875 1 + C T STAD 143029873 + 143029853 143029893 41 AACAATACATGGGTGAAACACGCGGGTGATCCTGAGAGCCT AACAATACATGGGTGAAACACGTGGGTGATCCTGAGAGCCT < 41bp 0.843796045523464 0.63265165846224 0.86827624 0.655004 prediction 0.422288774122447 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143029873 chr7:143029875 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_88845 0 0 0 0 2 CLCN1 chr7:143029966 5'GT 143029966 Upstream 92bp
chr1 20664309 20664309 1 + C T CESC 20664306 + 20664286 20664326 41 ACCAGACCAGCCTGGATGTCCAGCGGTGGCAGATTGATTTG ACCAGACCAGCCTGGATGTCCAGTGGTGGCAGATTGATTTG < 41bp 0.722454025254187 0.511311160282853 0.7651831 0.45802087 prediction 0.422285729942669 Functional Loss - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20664306 chr1:20664309 nonsynonymous SNV 0.022 1 24 hm5C_associated_SNPs_88846 0 0 0 0 1 VWA5B1 chr1:20664329 5'GT 20664329 Upstream 21bp
chr17 45299066 45299066 1 + T C OV 45299065 + 45299045 45299085 41 AAGAGATGAATGTCAAGATGCTGGACTTTGAGACGTTCTTG AAGAGATGAATGTCAAGATGCCGGACTTTGAGACGTTCTTG < 41bp 0.798171205021638 0.587031126934465 0.3825528 0.23514268 prediction 0.422280156174344 Functional Loss - MYL4 ENSG00000198336 CDS Human protein_coding chr17:45299065 chr17:45299066 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_88849 0 0 0 0 1 MYL4 chr17:45299048 3'AG 45299048 Downstream 19bp
chr1 32691906 32691906 1 + G A BRCA 32691903 + 32691883 32691923 41 TTGTGAGCTTTTTTGACCTGCGGGATCCGAGCCAGATTGGT TTGTGAGCTTTTTTGACCTGCGGAATCCGAGCCAGATTGGT < 41bp 0.797803843954825 0.586667561398161 0.8300374 0.5917529 prediction 0.422272565113328 Functional Loss - EIF3I ENSG00000084623 CDS Human protein_coding chr1:32691903 chr1:32691906 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_88851 0 0 1 0 1 EIF3I chr1:32691921 5'GT 32691921 Upstream 16bp
chr1 29639144 29639144 1 + G A UCEC 29639141 + 29639121 29639161 41 CATGGCGTCCCCTACCATGCCACGGGGCTGCTGGCTTTCAT CATGGCGTCCCCTACCATGCCACAGGGCTGCTGGCTTTCAT < 41bp 0.792300965285854 0.581167863474484 0.30583078 0.16015312 prediction 0.422266203622741 Functional Loss - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29639141 chr1:29639144 synonymous SNV . 0 24 hm5C_associated_SNPs_88854 0 0 1 0 2 PTPRU chr1:29639064 3'AG 29639064 Downstream 81bp
chr1 29639144 29639144 1 + G A UCEC 29639141 + 29639121 29639161 41 CATGGCGTCCCCTACCATGCCACGGGGCTGCTGGCTTTCAT CATGGCGTCCCCTACCATGCCACAGGGCTGCTGGCTTTCAT < 41bp 0.792300965285854 0.581167863474484 0.30583078 0.16015312 prediction 0.422266203622741 Functional Loss - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29639141 chr1:29639144 synonymous SNV . 0 24 hm5C_associated_SNPs_88854 0 0 1 0 2 PTPRU chr1:29639218 5'GT 29639218 Upstream 75bp
chr16 19693654 19693654 1 + C T PRAD 19693651 + 19693631 19693671 41 GAGAAAATCCGCATCTACACCTGCGTCCTGCATCTCCTCTC GAGAAAATCCGCATCTACACCTGTGTCCTGCATCTCCTCTC < 41bp 0.763521343385689 0.552388667176055 0.07090649 0.12086451 prediction 0.42226535241927 Functional Loss - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19693651 chr16:19693654 synonymous SNV . 0 24 hm5C_associated_SNPs_88855 0 0 0 0 1 C16orf62 chr16:19693712 5'GT 19693712 Upstream 59bp
chr6 35211482 35211482 1 + G A SKCM 35211479 + 35211459 35211499 41 GCTCTCCTGCGACCTTTGCCCTGGGAGTGATGCCCACGGGC GCTCTCCTGCGACCTTTGCCCTGAGAGTGATGCCCACGGGC < 41bp 0.816818085228696 0.605685410932444 0.8785713 0.43292922 prediction 0.422265348592504 Functional Loss - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35211479 chr6:35211482 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_88856 0 0 0 0 1 SCUBE3 chr6:35211532 5'GT 35211532 Upstream 51bp
chr20 35504592 35504592 1 + C T SKCM 35504590 + 35504570 35504610 41 ACAGGAGAATGAGAGGCCTCCGCTGGCGTTACACTCGGCTG ACAGGAGAATGAGAGGCCTCCGTTGGCGTTACACTCGGCTG < 41bp 0.735059940867149 0.523929292673532 0.8514918 0.8101654 prediction 0.422261296387233 Functional Loss - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35504590 chr20:35504592 synonymous SNV . 0 23 hm5C_associated_SNPs_88858 0 0 0 0 1 TLDC2 chr20:35504610 5'GT 35504610 Upstream 19bp
chr1 236341877 236341877 1 + T C LAML 236341876 + 236341856 236341896 41 GTGCTGTGTGCCGTCTCTCTCTCCATCTGTCTCTACAAAAT GTGCTGTGTGCCGTCTCTCTCCCCATCTGTCTCTACAAAAT < 41bp 0.858145214400136 0.647014638263844 0.917173 0.020070374 prediction 0.422261152272585 Functional Loss - GPR137B ENSG00000077585 CDS Human protein_coding chr1:236341876 chr1:236341877 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_88859 0 0 1 1 1 GPR137B chr1:236341936 5'GT 236341936 Upstream 60bp
chr18 21059302 21059302 1 + A C OV 21059301 + 21059281 21059321 41 TTTTTCCAGAAAGGAGGAGTCAAGGAAGCCCTTAGTGAACG TTTTTCCAGAAAGGAGGAGTCCAGGAAGCCCTTAGTGAACG < 41bp 0.711130039451512 0.452808861261767 0.3980075 0.22517195 prediction 0.422260078903024 Functional Loss - RIOK3 ENSG00000101782 CDS Human protein_coding chr18:21059301 chr18:21059302 nonsynonymous SNV 0.969 0 22 hm5C_associated_SNPs_88860 0 0 1 0 3 RIOK3 chr18:21059281 3'AG 21059281 Downstream 22bp
chr18 21059302 21059302 1 + A C OV 21059301 + 21059281 21059321 41 TTTTTCCAGAAAGGAGGAGTCAAGGAAGCCCTTAGTGAACG TTTTTCCAGAAAGGAGGAGTCCAGGAAGCCCTTAGTGAACG < 41bp 0.711130039451512 0.452808861261767 0.3980075 0.22517195 prediction 0.422260078903024 Functional Loss - RIOK3 ENSG00000101782 CDS Human protein_coding chr18:21059301 chr18:21059302 nonsynonymous SNV 0.969 0 22 hm5C_associated_SNPs_88860 0 0 1 0 3 RIOK3 chr18:21059290 3'AG 21059290 Downstream 13bp
chr18 21059302 21059302 1 + A C OV 21059301 + 21059281 21059321 41 TTTTTCCAGAAAGGAGGAGTCAAGGAAGCCCTTAGTGAACG TTTTTCCAGAAAGGAGGAGTCCAGGAAGCCCTTAGTGAACG < 41bp 0.711130039451512 0.452808861261767 0.3980075 0.22517195 prediction 0.422260078903024 Functional Loss - RIOK3 ENSG00000101782 CDS Human protein_coding chr18:21059301 chr18:21059302 nonsynonymous SNV 0.969 0 22 hm5C_associated_SNPs_88860 0 0 1 0 3 RIOK3 chr18:21059388 5'GT 21059388 Upstream 87bp
chr3 45559536 45559536 1 + G T PRAD 45559534 + 45559514 45559554 41 AAAGCTGAGGCCAGGAAGCTCTGGGAGTACAAGAACTCCGT AAAGCTGAGGCCAGGAAGCTCTTGGAGTACAAGAACTCCGT < 41bp 0.711129488074479 0.372735883090126 0.8703681 0.17760846 prediction 0.422258976148957 Functional Loss - LARS2 ENSG00000011376 CDS Human protein_coding chr3:45559534 chr3:45559536 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_88861 0 0 1 0 1 LARS2 chr3:45559564 5'GT 45559564 Upstream 29bp
chr17 27382857 27382857 1 + C T SKCM 27382855 + 27382835 27382875 41 CCCCTGATGAGCAGTTCATTCTCGATCGCCACCCAAAGTAT CCCCTGATGAGCAGTTCATTCTTGATCGCCACCCAAAGTAT < 41bp 0.881614788215365 0.670487586178773 0.30558434 0.02461335 prediction 0.422254404073183 Functional Loss - PIPOX ENSG00000179761 CDS Human protein_coding chr17:27382855 chr17:27382857 synonymous SNV . 0 23 hm5C_associated_SNPs_88862 0 0 1 0 2 PIPOX chr17:27382831 3'AG 27382831 Downstream 27bp
chr17 27382857 27382857 1 + C T SKCM 27382855 + 27382835 27382875 41 CCCCTGATGAGCAGTTCATTCTCGATCGCCACCCAAAGTAT CCCCTGATGAGCAGTTCATTCTTGATCGCCACCCAAAGTAT < 41bp 0.881614788215365 0.670487586178773 0.30558434 0.02461335 prediction 0.422254404073183 Functional Loss - PIPOX ENSG00000179761 CDS Human protein_coding chr17:27382855 chr17:27382857 synonymous SNV . 0 23 hm5C_associated_SNPs_88862 0 0 1 0 2 PIPOX chr17:27382906 5'GT 27382906 Upstream 50bp
chr16 20448627 20448627 1 + G A LUAD 20448624 + 20448604 20448644 41 CTGTTGAAGTGGAAAGTGCCCTGGCAGAGCATCCTGCTGTC CTGTTGAAGTGGAAAGTGCCCTGACAGAGCATCCTGCTGTC < 41bp 0.711124129663784 0.457934461123087 0.23840609 0.052608013 prediction 0.422248259327569 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20448624 chr16:20448627 nonsynonymous SNV 0.063 0 24 hm5C_associated_SNPs_88867 0 0 0 0 2 ACSM5 chr16:20448590 3'AG 20448590 Downstream 38bp
chr16 20448627 20448627 1 + G A LUAD 20448624 + 20448604 20448644 41 CTGTTGAAGTGGAAAGTGCCCTGGCAGAGCATCCTGCTGTC CTGTTGAAGTGGAAAGTGCCCTGACAGAGCATCCTGCTGTC < 41bp 0.711124129663784 0.457934461123087 0.23840609 0.052608013 prediction 0.422248259327569 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20448624 chr16:20448627 nonsynonymous SNV 0.063 0 24 hm5C_associated_SNPs_88867 0 0 0 0 2 ACSM5 chr16:20448689 5'GT 20448689 Upstream 63bp
chr10 26562596 26562596 1 + G A SKCM 26562593 + 26562573 26562613 41 GGGTGGGGGATTACTGATGTCCCGAAAACACAAGTGGAAAC GGGTGGGGGATTACTGATGTCCCAAAAACACAAGTGGAAAC < 41bp 0.72806960750653 0.516945624913862 0.30552083 0.2613624 prediction 0.422247965185336 Functional Loss - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26562593 chr10:26562596 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_88868 0 0 0 0 2 GAD2 chr10:26562565 3'AG 26562565 Downstream 32bp
chr10 26562596 26562596 1 + G A SKCM 26562593 + 26562573 26562613 41 GGGTGGGGGATTACTGATGTCCCGAAAACACAAGTGGAAAC GGGTGGGGGATTACTGATGTCCCAAAAACACAAGTGGAAAC < 41bp 0.72806960750653 0.516945624913862 0.30552083 0.2613624 prediction 0.422247965185336 Functional Loss - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26562593 chr10:26562596 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_88868 0 0 0 0 2 GAD2 chr10:26562629 5'GT 26562629 Upstream 34bp
chr1 220970104 220970104 1 + G A STAD 220970101 + 220970081 220970121 41 CTTCGAGCCTCACATGCGACCGAGACGTCCTCATCAAATAG CTTCGAGCCTCACATGCGACCGAAACGTCCTCATCAAATAG < 41bp 0.823829321894785 0.612705805152155 0.120627135 0.007558346 prediction 0.42224703348526 Functional Loss - MARC1 ENSG00000186205 CDS Human protein_coding chr1:220970101 chr1:220970104 nonsynonymous SNV 0.065 1 24 hm5C_associated_SNPs_88869 0 0 1 0 1 MARC1 chr1:220970147 5'GT 220970147 Upstream 44bp
chr12 4702224 4702224 1 + G A UCEC 4702221 + 4702201 4702241 41 CATATGAACAAAGTGAAATCCTGGGCTACGCGGAGCTGTGG CATATGAACAAAGTGAAATCCTGAGCTACGCGGAGCTGTGG < 41bp 0.78254216546121 0.571418847773789 0.9204291 0.727366 prediction 0.422246635374842 Functional Loss - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4702221 chr12:4702224 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_88870 0 0 1 0 1 DYRK4 chr12:4702168 3'AG 4702168 Downstream 57bp
chr21 38878508 38878508 1 + C T LUSC 38878505 + 38878485 38878525 41 GCTGCCGTGCAGGCCATGGACTGCGAGACACACAGTCCCCA GCTGCCGTGCAGGCCATGGACTGTGAGACACACAGTCCCCA < 41bp 0.74899859466078 0.537875673932966 0.15842772 0.15784523 prediction 0.422245841455627 Functional Loss - DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38878505 chr21:38878508 synonymous SNV . 0 24 hm5C_associated_SNPs_88872 0 0 1 0 1 DYRK1A chr21:38878526 5'GT 38878526 Upstream 19bp
chr1 230391065 230391065 1 + G T OV 230391063 + 230391043 230391083 41 GCAGCACCCCTACACGTTCCCGGGTGGCAGTGGCACTGTCT GCAGCACCCCTACACGTTCCCGTGTGGCAGTGGCACTGTCT < 41bp 0.711120101331606 0.348404782219874 0.8877245 0.074517995 prediction 0.422240202663213 Functional Loss - GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230391063 chr1:230391065 nonsynonymous SNV 0.763 4 23 hm5C_associated_SNPs_88875 0 0 1 1 1 GALNT2 chr1:230391090 5'GT 230391090 Upstream 26bp
chr16 88779098 88779098 1 + C T rs76614176 88779095 + 88779075 88779115 41 CTGGTGGGATCCGAGGGGGCCTACAAGGCGGCCGTGGACAG CTGGTGGGATCCGAGGGGGCCTATAAGGCGGCCGTGGACAG < 41bp 0.742376611242787 0.531257469836483 0.9291582 0.90790474 prediction 0.422238282812609 Functional Loss - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88779095 chr16:88779098 synonymous SNV . 0 24 hm5C_associated_SNPs_88878 0 0 1 0 1 CTU2 chr16:88779030 3'AG 88779030 Downstream 69bp
chr8 79627485 79627485 1 + C T SKCM 79627482 + 79627462 79627502 41 TGTCAAACCCCGAAATTCCACACCACCTAGTTTGGCAAGAA TGTCAAACCCCGAAATTCCACACTACCTAGTTTGGCAAGAA < 41bp 0.765186861629959 0.554067843282474 0.017286092 0.035634458 prediction 0.422238036694971 Functional Loss - ZC2HC1A ENSG00000104427 CDS Human protein_coding chr8:79627482 chr8:79627485 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_88879 0 0 1 0 2 ZC2HC1A chr8:79627456 3'AG 79627456 Downstream 30bp
chr8 79627485 79627485 1 + C T SKCM 79627482 + 79627462 79627502 41 TGTCAAACCCCGAAATTCCACACCACCTAGTTTGGCAAGAA TGTCAAACCCCGAAATTCCACACTACCTAGTTTGGCAAGAA < 41bp 0.765186861629959 0.554067843282474 0.017286092 0.035634458 prediction 0.422238036694971 Functional Loss - ZC2HC1A ENSG00000104427 CDS Human protein_coding chr8:79627482 chr8:79627485 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_88879 0 0 1 0 2 ZC2HC1A chr8:79627563 5'GT 79627563 Upstream 79bp
chr6 112421882 112421882 1 + G A SKCM 112421879 + 112421859 112421899 41 GCTTTTTTATTCAGGCAACTCCGGAGGTGCCCTGGAAGTCA GCTTTTTTATTCAGGCAACTCCGAAGGTGCCCTGGAAGTCA < 41bp 0.784797476655049 0.573679735528664 0.93434036 0.77529454 prediction 0.422235482252769 Functional Loss - FAM229B ENSG00000203778 CDS Human protein_coding chr6:112421879 chr6:112421882 synonymous SNV . 0 24 hm5C_associated_SNPs_88880 0 0 0 0 1 FAM229B chr6:112421873 3'AG 112421873 Downstream 10bp
chr4 57891674 57891674 1 + C T CESC 57891672 + 57891652 57891692 41 CTAGGGGACCTATTCAGATCCTCAATAGACAGCCCATGGAG CTAGGGGACCTATTCAGATCCTTAATAGACAGCCCATGGAG < 41bp 0.711115585496508 0.408320996114896 0.44135037 0.049859434 prediction 0.422231170993015 Functional Loss - POLR2B ENSG00000047315 CDS Human protein_coding chr4:57891672 chr4:57891674 synonymous SNV . 0 23 hm5C_associated_SNPs_88882 0 0 1 0 1 POLR2B chr4:57891703 5'GT 57891703 Upstream 30bp
chr7 27831706 27831706 1 + G A STAD 27831703 + 27831683 27831723 41 CTCGGCAAGAAGTTGTCTTTCTGGCTAAAGAACTCAGTGAT CTCGGCAAGAAGTTGTCTTTCTGACTAAAGAACTCAGTGAT < 41bp 0.793417293810903 0.582302586216644 0.39198646 0.15717939 prediction 0.422229415188517 Functional Loss - TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27831703 chr7:27831706 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_88883 0 0 1 0 1 TAX1BP1 chr7:27831625 3'AG 27831625 Downstream 82bp
chr19 40978545 40978545 1 + G A SKCM 40978542 + 40978522 40978562 41 TTCCCCGATGGCGCAGGTACCAGGGGAAGTGGACAACATGG TTCCCCGATGGCGCAGGTACCAGAGGAAGTGGACAACATGG < 41bp 0.711112571318884 0.486396330322953 0.94487643 0.93177164 prediction 0.422225142637768 Functional Loss - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:40978542 chr19:40978545 nonsynonymous SNV 0.901 2 24 hm5C_associated_SNPs_88886 0 0 0 0 1 SPTBN4 chr19:40978514 3'AG 40978514 Downstream 32bp
chr7 49815635 49815635 1 + G A ESCA 49815632 + 49815612 49815652 41 GGCTGCACCCGCGCTGCATCCACGTCGACACGAGCCAGTGC GGCTGCACCCGCGCTGCATCCACATCGACACGAGCCAGTGC < 41bp 0.814503612080294 0.603391250651016 0.18693107 0.017951816 prediction 0.422224722858556 Functional Loss - VWC2 ENSG00000188730 CDS Human protein_coding chr7:49815632 chr7:49815635 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_88887 0 0 0 0 1 VWC2 chr7:49815727 5'GT 49815727 Upstream 93bp
chr22 45927174 45927174 1 + G A BLCA 45927171 + 45927151 45927191 41 TCATTGAGGTTGAGGAGGAACAAGAGGACCCATATCTGAAT TCATTGAGGTTGAGGAGGAACAAAAGGACCCATATCTGAAT < 41bp 0.794284258694097 0.583172220259187 0.44028157 0.109624475 prediction 0.422224076869819 Functional Loss - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45927171 chr22:45927174 nonsynonymous SNV 0.857 2 24 hm5C_associated_SNPs_88888 0 0 1 0 2 FBLN1 chr22:45927145 3'AG 45927145 Downstream 30bp
chr22 45927174 45927174 1 + G A BLCA 45927171 + 45927151 45927191 41 TCATTGAGGTTGAGGAGGAACAAGAGGACCCATATCTGAAT TCATTGAGGTTGAGGAGGAACAAAAGGACCCATATCTGAAT < 41bp 0.794284258694097 0.583172220259187 0.44028157 0.109624475 prediction 0.422224076869819 Functional Loss - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45927171 chr22:45927174 nonsynonymous SNV 0.857 2 24 hm5C_associated_SNPs_88888 0 0 1 0 2 FBLN1 chr22:45927204 5'GT 45927204 Upstream 31bp
chr1 111860698 111860698 1 + G A STAD 111860695 + 111860675 111860715 41 AACAGCCCCCTCTACAAATACCCGACTGACACCGGCAGCAA AACAGCCCCCTCTACAAATACCCAACTGACACCGGCAGCAA < 41bp 0.800037704350492 0.58892655576938 0.28357124 0.16560033 prediction 0.422222297162223 Functional Loss - CHIA ENSG00000134216 CDS Human protein_coding chr1:111860695 chr1:111860698 synonymous SNV . 0 24 hm5C_associated_SNPs_88889 0 0 0 0 2 CHIA chr1:111860608 3'AG 111860608 Downstream 91bp
chr1 111860698 111860698 1 + G A STAD 111860695 + 111860675 111860715 41 AACAGCCCCCTCTACAAATACCCGACTGACACCGGCAGCAA AACAGCCCCCTCTACAAATACCCAACTGACACCGGCAGCAA < 41bp 0.800037704350492 0.58892655576938 0.28357124 0.16560033 prediction 0.422222297162223 Functional Loss - CHIA ENSG00000134216 CDS Human protein_coding chr1:111860695 chr1:111860698 synonymous SNV . 0 24 hm5C_associated_SNPs_88889 0 0 0 0 2 CHIA chr1:111860731 5'GT 111860731 Upstream 34bp
chr11 15197608 15197608 1 + G A rs199756406 15197605 + 15197585 15197625 41 AGCGAGTACAGTGCTGTCAGCAGGAACTCCTTGAAGGAAAT AGCGAGTACAGTGCTGTCAGCAGAAACTCCTTGAAGGAAAT < 41bp 0.80746871655964 0.596357977790162 0.8877777 0.820529 prediction 0.422221477538956 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15197605 chr11:15197608 synonymous SNV . 0 24 hm5C_associated_SNPs_88890 0 0 0 0 1 INSC chr11:15197632 5'GT 15197632 Upstream 25bp
chr2 113310287 113310287 1 + G A STAD 113310284 + 113310264 113310304 41 TTATATGCTTTGTCTCATGACGCGAAAGCTCTTTGCTTTAG TTATATGCTTTGTCTCATGACGCAAAAGCTCTTTGCTTTAG < 41bp 0.78304237525617 0.571931809131957 0.30400476 0.072659016 prediction 0.422221132248428 Functional Loss - POLR1B ENSG00000125630 CDS Human protein_coding chr2:113310284 chr2:113310287 nonsynonymous SNV 0.828 1 24 hm5C_associated_SNPs_88891 0 0 1 0 1 POLR1B chr2:113310222 3'AG 113310222 Downstream 66bp
chr4 146032204 146032204 1 + A C PRAD 146032203 + 146032183 146032223 41 CTTGTGCTGTCGTTTGCATACAGAAAGCTGATATGTAGGTT CTTGTGCTGTCGTTTGCATACCGAAAGCTGATATGTAGGTT < 41bp 0.71111042348295 0.453255132964083 0.29686373 0.30244255 prediction 0.4222208469659 Functional Loss - ABCE1 ENSG00000164163 CDS Human protein_coding chr4:146032203 chr4:146032204 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_88892 0 0 1 0 2 ABCE1 chr4:146032120 3'AG 146032120 Downstream 85bp
chr4 146032204 146032204 1 + A C PRAD 146032203 + 146032183 146032223 41 CTTGTGCTGTCGTTTGCATACAGAAAGCTGATATGTAGGTT CTTGTGCTGTCGTTTGCATACCGAAAGCTGATATGTAGGTT < 41bp 0.71111042348295 0.453255132964083 0.29686373 0.30244255 prediction 0.4222208469659 Functional Loss - ABCE1 ENSG00000164163 CDS Human protein_coding chr4:146032203 chr4:146032204 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_88892 0 0 1 0 2 ABCE1 chr4:146032216 5'GT 146032216 Upstream 13bp
chr17 9580191 9580191 1 + C T UCEC 9580188 + 9580168 9580208 41 TGCAGAGGAAGGAGGCGTCCCTGCAGATGAGGTGTGATAGA TGCAGAGGAAGGAGGCGTCCCTGTAGATGAGGTGTGATAGA < 41bp 0.765796587537842 0.554686322723499 0.8562803 0.27513692 prediction 0.422220529628687 Functional Loss - USP43 ENSG00000154914 CDS Human protein_coding chr17:9580188 chr17:9580191 nonsynonymous SNV 0.966 0 24 hm5C_associated_SNPs_88893 0 0 0 0 1 USP43 chr17:9580198 5'GT 9580198 Upstream 8bp
chr11 124955516 124955516 1 + G T LIHC 124955513 + 124955493 124955533 41 CTGGCTGGGCTCATCTCCCCCACGGGCTGGAACAATGTCTT CTGGCTGGGCTCATCTCCCCCACTGGCTGGAACAATGTCTT < 41bp 0.711109227632657 0.301518997749125 0.34465986 0.07486886 prediction 0.422218455265314 Functional Loss - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124955513 chr11:124955516 synonymous SNV . 0 24 hm5C_associated_SNPs_88895 0 0 0 0 2 SLC37A2 chr11:124955473 3'AG 124955473 Downstream 44bp
chr11 124955516 124955516 1 + G T LIHC 124955513 + 124955493 124955533 41 CTGGCTGGGCTCATCTCCCCCACGGGCTGGAACAATGTCTT CTGGCTGGGCTCATCTCCCCCACTGGCTGGAACAATGTCTT < 41bp 0.711109227632657 0.301518997749125 0.34465986 0.07486886 prediction 0.422218455265314 Functional Loss - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124955513 chr11:124955516 synonymous SNV . 0 24 hm5C_associated_SNPs_88895 0 0 0 0 2 SLC37A2 chr11:124955570 5'GT 124955570 Upstream 55bp
chr16 312436 312436 1 + C T CESC 312433 + 312413 312453 41 TTTTGAATAGCAAGCTCCCTCTGCGGCTGCTCTGTGAAGGG TTTTGAATAGCAAGCTCCCTCTGTGGCTGCTCTGTGAAGGG < 41bp 0.752985817319759 0.541876745125274 0.19439235 0.12458441 prediction 0.422218144388971 Functional Loss - FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:312433 chr16:312436 synonymous SNV . 0 24 hm5C_associated_SNPs_88896 0 0 0 0 1 FAM234A chr16:312423 3'AG 312423 Downstream 14bp
chr1 159275872 159275872 1 + G A LUSC 159275869 + 159275849 159275889 41 TGGAGGAACTGGGATGTGTACAAGGTGATCTATTATAAGGA TGGAGGAACTGGGATGTGTACAAAGTGATCTATTATAAGGA < 41bp 0.803535928459651 0.592429944045019 0.34266973 0.14271209 prediction 0.422211968829265 Functional Loss - FCER1A ENSG00000179639 CDS Human protein_coding chr1:159275869 chr1:159275872 synonymous SNV . 0 24 hm5C_associated_SNPs_88899 0 0 0 0 1 FCER1A chr1:159275778 3'AG 159275778 Downstream 95bp
chr16 89220529 89220529 1 + G T LUAD 89220527 + 89220507 89220547 41 GGCCCCGTACGCGGTGCCCTCGGAGCTGGTGCTGGTGGAGG GGCCCCGTACGCGGTGCCCTCGTAGCTGGTGCTGGTGGAGG < 41bp 0.711102001827984 0.354117721069812 0.9031272 0.20320258 prediction 0.422204003655968 Functional Loss - ACSF3 ENSG00000176715 CDS Human protein_coding chr16:89220527 chr16:89220529 stopgain 0.704 0 23 hm5C_associated_SNPs_88902 0 0 1 0 1 ACSF3 chr16:89220498 3'AG 89220498 Downstream 32bp
chr16 28883134 28883134 1 + C T UCEC 28883131 + 28883111 28883151 41 GGGCCTCTCAGACCGCCCCTCGGCATCCATCTCCCCCAGCT GGGCCTCTCAGACCGCCCCTCGGTATCCATCTCCCCCAGCT < 41bp 0.731725463548408 0.520624310089791 0.75962245 0.37427112 prediction 0.422202306917233 Functional Loss - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28883131 chr16:28883134 nonsynonymous SNV 0.981 3 24 hm5C_associated_SNPs_88903 0 0 1 0 1 SH2B1 chr16:28883101 3'AG 28883101 Downstream 34bp
chr19 35504577 35504577 1 + C T SKCM 35504574 + 35504554 35504594 41 ACGCCCAACCTTTCCCGAGCCAGCAGCGACGCAGACCATGG ACGCCCAACCTTTCCCGAGCCAGTAGCGACGCAGACCATGG < 41bp 0.739857214934364 0.528758941119406 0.41762412 0.048654705 prediction 0.422196547629915 Functional Loss - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504574 chr19:35504577 synonymous SNV . 0 24 hm5C_associated_SNPs_88904 0 0 1 0 1 GRAMD1A chr19:35504595 5'GT 35504595 Upstream 19bp
chr7 150767561 150767561 1 + A T LUAD 150767557 + 150767537 150767577 41 CCCCCAGCGTGAGCTGCCGCCTCCAGCACCACCAGCTGGCA CCCCCAGCGTGAGCTGCCGCCTCCTGCACCACCAGCTGGCA < 41bp 0.711097010256519 0.360477378744879 0.93954575 0.09730223 prediction 0.422194020513037 Functional Loss - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150767557 chr7:150767561 synonymous SNV . 0 25 hm5C_associated_SNPs_88905 0 0 1 0 1 SLC4A2 chr7:150767658 5'GT 150767658 Upstream 98bp
chr5 135391404 135391404 1 + C T UCEC 135391402 + 135391382 135391422 41 AGAACAGCTGCATCGCGGCCCACGACAAGAGGGGGAGGTAC AGAACAGCTGCATCGCGGCCCATGACAAGAGGGGGAGGTAC < 41bp 0.711094740647191 0.424418733088363 0.017695129 0.036256313 prediction 0.422189481294382 Functional Loss - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135391402 chr5:135391404 synonymous SNV . 0 23 hm5C_associated_SNPs_88909 0 0 1 0 1 TGFBI chr5:135391369 3'AG 135391369 Downstream 36bp
chr21 22881216 22881216 1 + G A SKCM 22881213 + 22881193 22881233 41 GGCTTGGAGCAGTAATTGGCCTGGGAGTTGCTGCACTGCTG GGCTTGGAGCAGTAATTGGCCTGAGAGTTGCTGCACTGCTG < 41bp 0.711090236881296 0.491243787924002 0.3748747 0.07507551 prediction 0.422180473762593 Functional Loss - NCAM2 ENSG00000154654 CDS Human protein_coding chr21:22881213 chr21:22881216 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_88911 0 0 0 0 1 NCAM2 chr21:22881172 3'AG 22881172 Downstream 45bp
chr20 62641575 62641575 1 + G A rs2427588 62641572 + 62641552 62641592 41 GCCCTCGAGCATGTTCCAAACTCGGTTCGCTTGTGGAAAGC GCCCTCGAGCATGTTCCAAACTCAGTTCGCTTGTGGAAAGC < 41bp 0.809813139667382 0.598723868305832 0.27002093 0.09666768 prediction 0.422178542723099 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62641572 chr20:62641575 synonymous SNV . 0 24 hm5C_associated_SNPs_88912 1 0 1 0 2 PRPF6 chr20:62641553 3'AG 62641553 Downstream 23bp
chr20 62641575 62641575 1 + G A rs2427588 62641572 + 62641552 62641592 41 GCCCTCGAGCATGTTCCAAACTCGGTTCGCTTGTGGAAAGC GCCCTCGAGCATGTTCCAAACTCAGTTCGCTTGTGGAAAGC < 41bp 0.809813139667382 0.598723868305832 0.27002093 0.09666768 prediction 0.422178542723099 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62641572 chr20:62641575 synonymous SNV . 0 24 hm5C_associated_SNPs_88912 1 0 1 0 2 PRPF6 chr20:62641671 5'GT 62641671 Upstream 97bp
chr15 41137154 41137154 1 + G A UCEC 41137151 + 41137131 41137171 41 TTCGTGTGCAAGTTCGCGCCCAGGGAGGGCTTCATCAACTA TTCGTGTGCAAGTTCGCGCCCAGAGAGGGCTTCATCAACTA < 41bp 0.820305042797748 0.609217202010908 0.6281577 0.2271876 prediction 0.422175681573679 Functional Loss - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41137151 chr15:41137154 synonymous SNV . 0 24 hm5C_associated_SNPs_88914 0 0 0 0 1 SPINT1 chr15:41137227 5'GT 41137227 Upstream 74bp
chr13 24466111 24466111 1 - C A GBM 24466113 - 24466093 24466133 41 ACATGGCCCCAAGGGGCTTGCAGGGCCCATGGGAGAGAAAG ACATGGCCCCAAGGGGCTTGCATGGCCCATGGGAGAGAAAG < 41bp 0.922133825547286 0.711047986912141 0.89374995 0.3434351 prediction 0.42217167727029 Functional Loss - C1QTNF9B ENSG00000205863 CDS Human protein_coding chr13:24466113 chr13:24466111 nonsynonymous SNV 0.024 5 23 hm5C_associated_SNPs_88915 0 0 0 0 1 C1QTNF9B chr13:24466200 3'AG 24466200 Downstream 90bp
chr1 157895827 157895827 1 + G A LGG 157895824 + 157895804 157895844 41 CGCAGTGAGGTGGTGGCACTCACGGTCACAGGTGGGACATG CGCAGTGAGGTGGTGGCACTCACAGTCACAGGTGGGACATG < 41bp 0.772204112705085 0.561120781394833 0.8408349 0.31865093 prediction 0.422166662620505 Functional Loss - LOC105371458 ENSG00000236957 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:157895824 chr1:157895827 . . 0 24 hm5C_associated_SNPs_88916 0 0 0 0 1 LOC105371458 chr1:157895834 5'GT 157895834 Upstream 8bp
chr19 34292106 34292106 1 + G T LUSC 34292103 + 34292083 34292123 41 CATGTCCCGGCTGTCTCTCACCCGGTCGCCTGTGTCTCCCC CATGTCCCGGCTGTCTCTCACCCTGTCGCCTGTGTCTCCCC < 41bp 0.711082415623192 0.300799313364308 0.4695816 0.17609677 prediction 0.422164831246385 Functional Loss - KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34292103 chr19:34292106 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_88917 0 0 1 0 1 KCTD15 chr19:34292072 3'AG 34292072 Downstream 35bp
chr20 333887 333887 1 + C T UCEC 333884 + 333864 333904 41 CCTCGGGGACCCTGCTTCTGCTGCTGGGTGTGGCGGCTCTG CCTCGGGGACCCTGCTTCTGCTGTTGGGTGTGGCGGCTCTG < 41bp 0.711080970956843 0.498530602696257 0.33720833 0.21146846 prediction 0.422161941913686 Functional Loss - NRSN2 ENSG00000125841 CDS Human protein_coding chr20:333884 chr20:333887 synonymous SNV . 0 24 hm5C_associated_SNPs_88918 0 0 1 0 1 NRSN2 chr20:333854 3'AG 333854 Downstream 34bp
chr1 180217561 180217561 1 + G A SKCM 180217558 + 180217538 180217578 41 GGACAGGTGCTTCTCCAGGGCTGGGAGCGTCTACTGCAAGG GGACAGGTGCTTCTCCAGGGCTGAGAGCGTCTACTGCAAGG < 41bp 0.809444096369114 0.598367098242395 0.8148953 0.333387 prediction 0.422153996253438 Functional Loss - LHX4 ENSG00000121454 CDS Human protein_coding chr1:180217558 chr1:180217561 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_88920 0 0 1 0 1 LHX4 chr1:180217591 5'GT 180217591 Upstream 31bp
chr1 202205114 202205114 1 + C T COAD 202205111 + 202205091 202205131 41 CGCTGTGGGAGCTGCCGAGCCTGCAGTCGCTGTGAGTCATT CGCTGTGGGAGCTGCCGAGCCTGTAGTCGCTGTGAGTCATT < 41bp 0.755132191560683 0.544058275868381 0.8864374 0.58815515 prediction 0.422147831384605 Functional Loss - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202205111 chr1:202205114 stopgain 0.999 1 24 hm5C_associated_SNPs_88922 0 0 0 0 2 LGR6 chr1:202205050 3'AG 202205050 Downstream 65bp
chr1 202205114 202205114 1 + C T COAD 202205111 + 202205091 202205131 41 CGCTGTGGGAGCTGCCGAGCCTGCAGTCGCTGTGAGTCATT CGCTGTGGGAGCTGCCGAGCCTGTAGTCGCTGTGAGTCATT < 41bp 0.755132191560683 0.544058275868381 0.8864374 0.58815515 prediction 0.422147831384605 Functional Loss - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202205111 chr1:202205114 stopgain 0.999 1 24 hm5C_associated_SNPs_88922 0 0 0 0 2 LGR6 chr1:202205121 5'GT 202205121 Upstream 8bp
chr19 19329804 19329804 1 + G A UCEC 19329801 + 19329781 19329821 41 CTGGGTCAGTGCAGGCTGCGCTGGCGGAGCTGGTGGCCCTG CTGGGTCAGTGCAGGCTGCGCTGACGGAGCTGGTGGCCCTG < 41bp 0.711073047400274 0.446049815964411 0.8563963 0.50855935 prediction 0.422146094800547 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19329801 chr19:19329804 nonsynonymous SNV 0.960 3 24 hm5C_associated_SNPs_88923 0 0 0 0 1 NCAN chr19:19329724 3'AG 19329724 Downstream 81bp
chr14 24771457 24771457 1 + C T LUAD 24771454 + 24771434 24771474 41 CTAGTCCCCTACTGCTATTTCTCCGAGATCAGACGAGTTCC CTAGTCCCCTACTGCTATTTCTCTGAGATCAGACGAGTTCC < 41bp 0.771577522725795 0.560506804808275 0.119693905 0.11662564 prediction 0.422141435835041 Functional Loss - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24771454 chr14:24771457 stopgain 0.991 1 24 hm5C_associated_SNPs_88925 0 0 1 0 1 NOP9 chr14:24771438 3'AG 24771438 Downstream 20bp
chr1 66713297 66713297 1 + C T SKCM 66713295 + 66713275 66713315 41 AGACAGCGACTATGACTTGTCACCAAAGGCGATGTCGAGAA AGACAGCGACTATGACTTGTCATCAAAGGCGATGTCGAGAA < 41bp 0.71107053043715 0.427665829382133 0.16378316 0.14476302 prediction 0.4221410608743 Functional Loss - PDE4B ENSG00000184588 CDS Human protein_coding chr1:66713295 chr1:66713297 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_88926 0 0 0 0 1 PDE4B chr1:66713337 5'GT 66713337 Upstream 41bp
chr1 160106098 160106098 1 + G A SKCM 160106095 + 160106075 160106115 41 TGATATCATGAAGCGGCAGCCACGAAACTCCCAGACGGACA TGATATCATGAAGCGGCAGCCACAAAACTCCCAGACGGACA < 41bp 0.787232408382505 0.576164394086937 0.32330167 0.17067942 prediction 0.422136028591135 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160106095 chr1:160106098 nonsynonymous SNV 0.048 5 24 hm5C_associated_SNPs_88928 0 0 0 0 2 ATP1A2 chr1:160106037 3'AG 160106037 Downstream 62bp
chr1 160106098 160106098 1 + G A SKCM 160106095 + 160106075 160106115 41 TGATATCATGAAGCGGCAGCCACGAAACTCCCAGACGGACA TGATATCATGAAGCGGCAGCCACAAAACTCCCAGACGGACA < 41bp 0.787232408382505 0.576164394086937 0.32330167 0.17067942 prediction 0.422136028591135 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160106095 chr1:160106098 nonsynonymous SNV 0.048 5 24 hm5C_associated_SNPs_88928 0 0 0 0 2 ATP1A2 chr1:160106160 5'GT 160106160 Upstream 63bp
chrX 106890893 106890893 1 + C T LUSC 106890890 + 106890870 106890910 41 ATCTTGACTCATGGAATCTTCTCCGGTCCTGCTATTTCTCG ATCTTGACTCATGGAATCTTCTCTGGTCCTGCTATTTCTCG < 41bp 0.760252639471367 0.549186283534293 0.15659788 0.12540796 prediction 0.422132711874148 Functional Loss - PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106890890 chrX:106890893 synonymous SNV . 0 24 hm5C_associated_SNPs_88931 0 0 1 0 1 PRPS1 chrX:106890836 3'AG 106890836 Downstream 58bp
chr4 102946642 102946642 1 + G A CESC 102946639 + 102946619 102946659 41 CTGTAGCTAATGCCTTCCAACTGGAAAGACCTCACTTCACC CTGTAGCTAATGCCTTCCAACTGAAAAGACCTCACTTCACC < 41bp 0.751959070472783 0.540893322462645 0.3416963 0.23986968 prediction 0.422131496020276 Functional Loss - BANK1 ENSG00000153064 CDS Human protein_coding chr4:102946639 chr4:102946642 nonsynonymous SNV 0.029 1 24 hm5C_associated_SNPs_88932 0 0 0 0 1 BANK1 chr4:102946666 5'GT 102946666 Upstream 25bp
chr7 104719376 104719376 1 + G A COAD 104719373 + 104719353 104719393 41 AAGGACTTTTGGGAATGAGGCTCGATTCATCAGGCGGTCTT AAGGACTTTTGGGAATGAGGCTCAATTCATCAGGCGGTCTT < 41bp 0.711063563782374 0.487610216889938 0.11805543 0.07913777 prediction 0.422127127564749 Functional Loss - KMT2E ENSG00000005483 CDS Human protein_coding chr7:104719373 chr7:104719376 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_88934 0 0 1 0 2 KMT2E chr7:104719293 3'AG 104719293 Downstream 84bp
chr7 104719376 104719376 1 + G A COAD 104719373 + 104719353 104719393 41 AAGGACTTTTGGGAATGAGGCTCGATTCATCAGGCGGTCTT AAGGACTTTTGGGAATGAGGCTCAATTCATCAGGCGGTCTT < 41bp 0.711063563782374 0.487610216889938 0.11805543 0.07913777 prediction 0.422127127564749 Functional Loss - KMT2E ENSG00000005483 CDS Human protein_coding chr7:104719373 chr7:104719376 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_88934 0 0 1 0 2 KMT2E chr7:104719410 5'GT 104719410 Upstream 35bp
chr12 7302202 7302202 1 + G A UCS 7302199 + 7302179 7302219 41 TGGTGGGGGATGACCTGGATCCCGAGCGGGAAAGCCTGCTC TGGTGGGGGATGACCTGGATCCCAAGCGGGAAAGCCTGCTC < 41bp 0.807415963078895 0.596354134392968 0.30344006 0.14227113 prediction 0.422123657371854 Functional Loss - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7302199 chr12:7302202 nonsynonymous SNV 0.862 3 24 hm5C_associated_SNPs_88935 0 0 1 0 2 CLSTN3 chr12:7302119 3'AG 7302119 Downstream 84bp
chr12 7302202 7302202 1 + G A UCS 7302199 + 7302179 7302219 41 TGGTGGGGGATGACCTGGATCCCGAGCGGGAAAGCCTGCTC TGGTGGGGGATGACCTGGATCCCAAGCGGGAAAGCCTGCTC < 41bp 0.807415963078895 0.596354134392968 0.30344006 0.14227113 prediction 0.422123657371854 Functional Loss - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7302199 chr12:7302202 nonsynonymous SNV 0.862 3 24 hm5C_associated_SNPs_88935 0 0 1 0 2 CLSTN3 chr12:7302289 5'GT 7302289 Upstream 88bp
chr18 44013466 44013466 1 + C T SKCM 44013463 + 44013443 44013483 41 CACCGCAGGCTGGTCTCGCACCCCAGGTTGGTGCTGCCTGG CACCGCAGGCTGGTCTCGCACCCTAGGTTGGTGCTGCCTGG < 41bp 0.724243710490787 0.513185392578464 0.16592154 0.09329912 prediction 0.422116635824647 Functional Loss - RNF165 ENSG00000141622 CDS Human protein_coding chr18:44013463 chr18:44013466 synonymous SNV . 0 24 hm5C_associated_SNPs_88936 0 0 0 0 1 RNF165 chr18:44013468 5'GT 44013468 Upstream 3bp
chr16 30676118 30676118 1 + G A COAD 30676115 + 30676095 30676135 41 GAGGTGGTGGGGGCAGGGGGCTCGGCCCGGCCCCTGGCCTT GAGGTGGTGGGGGCAGGGGGCTCAGCCCGGCCCCTGGCCTT < 41bp 0.798475891801834 0.587420916917617 0.9017948 0.8855022 prediction 0.422109949768434 Functional Loss - FBRS ENSG00000156860 CDS Human protein_coding chr16:30676115 chr16:30676118 synonymous SNV . 0 24 hm5C_associated_SNPs_88937 0 0 1 0 1 FBRS chr16:30676036 3'AG 30676036 Downstream 83bp
chr22 49042484 49042484 1 + G A GBM 49042481 + 49042461 49042501 41 CCAGCCTCGGAGGACGATCGCCCGGCAGACCGCCCGCTGTG CCAGCCTCGGAGGACGATCGCCCAGCAGACCGCCCGCTGTG < 41bp 0.711052089599323 0.455043921510611 0.5924946 0.06329304 prediction 0.422104179198646 Functional Loss - FAM19A5 ENSG00000219438 CDS Human protein_coding chr22:49042481 chr22:49042484 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_88939 0 0 0 0 2 FAM19A5 chr22:49042409 3'AG 49042409 Downstream 76bp
chr22 49042484 49042484 1 + G A GBM 49042481 + 49042461 49042501 41 CCAGCCTCGGAGGACGATCGCCCGGCAGACCGCCCGCTGTG CCAGCCTCGGAGGACGATCGCCCAGCAGACCGCCCGCTGTG < 41bp 0.711052089599323 0.455043921510611 0.5924946 0.06329304 prediction 0.422104179198646 Functional Loss - FAM19A5 ENSG00000219438 CDS Human protein_coding chr22:49042481 chr22:49042484 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_88939 0 0 0 0 2 FAM19A5 chr22:49042558 5'GT 49042558 Upstream 75bp
chr22 49042483 49042483 1 + C T STAD 49042481 + 49042461 49042501 41 CCAGCCTCGGAGGACGATCGCCCGGCAGACCGCCCGCTGTG CCAGCCTCGGAGGACGATCGCCTGGCAGACCGCCCGCTGTG < 41bp 0.711052089599323 0.438220946397608 0.5924946 0.4749601 prediction 0.422104179198646 Functional Loss - FAM19A5 ENSG00000219438 CDS Human protein_coding chr22:49042481 chr22:49042483 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_88940 0 0 0 0 2 FAM19A5 chr22:49042409 3'AG 49042409 Downstream 75bp
chr22 49042483 49042483 1 + C T STAD 49042481 + 49042461 49042501 41 CCAGCCTCGGAGGACGATCGCCCGGCAGACCGCCCGCTGTG CCAGCCTCGGAGGACGATCGCCTGGCAGACCGCCCGCTGTG < 41bp 0.711052089599323 0.438220946397608 0.5924946 0.4749601 prediction 0.422104179198646 Functional Loss - FAM19A5 ENSG00000219438 CDS Human protein_coding chr22:49042481 chr22:49042483 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_88940 0 0 0 0 2 FAM19A5 chr22:49042558 5'GT 49042558 Upstream 76bp
chr19 58189305 58189305 1 + G T UCEC 58189303 + 58189283 58189323 41 TCCACGTCCACATGCAGGGACAGGAAGCTCTCTTTTCTGAG TCCACGTCCACATGCAGGGACATGAAGCTCTCTTTTCTGAG < 41bp 0.711046249914053 0.362290932515077 0.227898 0.2213924 prediction 0.422092499828106 Functional Loss - ZSCAN4 ENSG00000180532 CDS Human protein_coding chr19:58189303 chr19:58189305 nonsynonymous SNV 0.910 1 23 hm5C_associated_SNPs_88946 0 0 0 0 1 ZSCAN4 chr19:58189282 3'AG 58189282 Downstream 24bp
chr22 42276798 42276798 1 + G A BLCA 42276795 + 42276775 42276815 41 GGGCACTGCCCACCTCCCGCCTGGACCTGGCCTGCAGCCTC GGGCACTGCCCACCTCCCGCCTGAACCTGGCCTGCAGCCTC < 41bp 0.812402405857648 0.601356696498226 0.43832365 0.31033033 prediction 0.422091418718845 Functional Loss - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42276795 chr22:42276798 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_88947 0 0 1 0 1 SREBF2 chr22:42276720 3'AG 42276720 Downstream 79bp
chr12 109490502 109490502 1 - G A rs11067385 109490504 - 109490484 109490524 41 TCGGCCGCGGTCATCGCCGCCTCGGCCCGGGAGCTCAGCAT TCGGCCGCGGTCATCGCCGCCTTGGCCCGGGAGCTCAGCAT < 41bp 0.824221642445232 0.613178524238807 0.04335293 0.03336522 prediction 0.422086236412849 Functional Loss - USP30 ENSG00000135093 CDS Human protein_coding chr12:109490504 chr12:109490502 nonsynonymous SNV 0.253 0 23 hm5C_associated_SNPs_88948 0 0 0 0 1 USP30 chr12:109490543 3'AG 109490543 Downstream 42bp
chr14 93303751 93303751 1 + T C COAD 93303750 + 93303730 93303770 41 GTATTCGCCTGGGAATTTTTCTCCGAAGATACCCCATAGCG GTATTCGCCTGGGAATTTTTCCCCGAAGATACCCCATAGCG < 41bp 0.711041578709075 0.446704878435912 0.06562969 0.050649285 prediction 0.42208315741815 Functional Loss - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93303750 chr14:93303751 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_88949 0 0 1 0 2 GOLGA5 chr14:93303731 3'AG 93303731 Downstream 21bp
chr14 93303751 93303751 1 + T C COAD 93303750 + 93303730 93303770 41 GTATTCGCCTGGGAATTTTTCTCCGAAGATACCCCATAGCG GTATTCGCCTGGGAATTTTTCCCCGAAGATACCCCATAGCG < 41bp 0.711041578709075 0.446704878435912 0.06562969 0.050649285 prediction 0.42208315741815 Functional Loss - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93303750 chr14:93303751 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_88949 0 0 1 0 2 GOLGA5 chr14:93303794 5'GT 93303794 Upstream 44bp
chr8 6605223 6605223 1 + C T LGG 6605221 + 6605201 6605241 41 ATTAAAACATGTGCTAACACCACGAATAAAGGCAACTCACG ATTAAAACATGTGCTAACACCATGAATAAAGGCAACTCACG < 41bp 0.711038907466608 0.416823768497034 0.28482914 0.18511829 prediction 0.422077814933215 Functional Loss - AGPAT5 ENSG00000155189 CDS Human protein_coding chr8:6605221 chr8:6605223 stopgain 0.994 1 23 hm5C_associated_SNPs_88953 0 0 1 0 1 AGPAT5 chr8:6605191 3'AG 6605191 Downstream 33bp
chr15 44788617 44788617 1 + C T rs871923 44788615 + 44788595 44788635 41 AGTGGTTATTCATCAGCCCACGCGGAGGCCACCTATGAAGA AGTGGTTATTCATCAGCCCACGTGGAGGCCACCTATGAAGA < 41bp 0.711037465112783 0.42665733808007 0.75959766 0.5772181 prediction 0.422074930225567 Functional Loss - CTDSPL2 ENSG00000137770 CDS Human protein_coding chr15:44788615 chr15:44788617 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_88954 0 0 1 0 2 CTDSPL2 chr15:44788578 3'AG 44788578 Downstream 40bp
chr15 44788617 44788617 1 + C T rs871923 44788615 + 44788595 44788635 41 AGTGGTTATTCATCAGCCCACGCGGAGGCCACCTATGAAGA AGTGGTTATTCATCAGCCCACGTGGAGGCCACCTATGAAGA < 41bp 0.711037465112783 0.42665733808007 0.75959766 0.5772181 prediction 0.422074930225567 Functional Loss - CTDSPL2 ENSG00000137770 CDS Human protein_coding chr15:44788615 chr15:44788617 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_88954 0 0 1 0 2 CTDSPL2 chr15:44788656 5'GT 44788656 Upstream 40bp
chr15 44788618 44788618 1 + G A BLCA 44788615 + 44788595 44788635 41 AGTGGTTATTCATCAGCCCACGCGGAGGCCACCTATGAAGA AGTGGTTATTCATCAGCCCACGCAGAGGCCACCTATGAAGA < 41bp 0.711037465112783 0.46334898971274 0.75959766 0.2901434 prediction 0.422074930225567 Functional Loss - CTDSPL2 ENSG00000137770 CDS Human protein_coding chr15:44788615 chr15:44788618 synonymous SNV . 0 24 hm5C_associated_SNPs_88955 0 0 1 0 2 CTDSPL2 chr15:44788578 3'AG 44788578 Downstream 41bp
chr15 44788618 44788618 1 + G A BLCA 44788615 + 44788595 44788635 41 AGTGGTTATTCATCAGCCCACGCGGAGGCCACCTATGAAGA AGTGGTTATTCATCAGCCCACGCAGAGGCCACCTATGAAGA < 41bp 0.711037465112783 0.46334898971274 0.75959766 0.2901434 prediction 0.422074930225567 Functional Loss - CTDSPL2 ENSG00000137770 CDS Human protein_coding chr15:44788615 chr15:44788618 synonymous SNV . 0 24 hm5C_associated_SNPs_88955 0 0 1 0 2 CTDSPL2 chr15:44788656 5'GT 44788656 Upstream 39bp
chr8 104153274 104153274 1 + G T MESO 104153272 + 104153252 104153292 41 GACAGCGGCCCCGAAGCGGGCGGCCTGCACTCGGGTAAGTG GACAGCGGCCCCGAAGCGGGCGTCCTGCACTCGGGTAAGTG < 41bp 0.711034756976279 0.364585830381819 0.4069855 0.38091356 prediction 0.422069513952558 Functional Loss - BAALC ENSG00000164929 CDS Human protein_coding chr8:104153272 chr8:104153274 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_88956 0 0 0 0 1 BAALC chr8:104153285 5'GT 104153285 Upstream 12bp
chr5 637837 637837 1 + G T CESC 637835 + 637815 637855 41 CCAAGGAGAGCCTGAGCAGACAGGACAGCTCAGAAAGCAGG CCAAGGAGAGCCTGAGCAGACATGACAGCTCAGAAAGCAGG < 41bp 0.906057364726189 0.695024576340498 0.4661453 0.24214041 prediction 0.422065576771383 Functional Loss - CEP72 ENSG00000112877 CDS Human protein_coding chr5:637835 chr5:637837 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_88957 0 0 1 0 1 CEP72 chr5:637933 5'GT 637933 Upstream 97bp
chr7 121944307 121944307 1 + T C HNSC 121944306 + 121944286 121944326 41 GAGTTGAGATGCAGAGAGTGCTTGGGTTCCCCCTTGGGTAA GAGTTGAGATGCAGAGAGTGCCTGGGTTCCCCCTTGGGTAA < 41bp 0.740530812850842 0.529499165839047 0.07655439 0.36015838 prediction 0.42206329402359 Functional Loss - FEZF1 ENSG00000128610 CDS Human protein_coding chr7:121944306 chr7:121944307 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_88959 0 0 0 0 1 FEZF1 chr7:121944322 5'GT 121944322 Upstream 16bp
chr22 42172268 42172268 1 + G T LUSC 42172266 + 42172246 42172286 41 GGAGCATGGGGCATCCCCATCAGGAGGTCAGTCTGCAGGTG GGAGCATGGGGCATCCCCATCATGAGGTCAGTCTGCAGGTG < 41bp 0.904116041881473 0.693085962450368 0.92084014 0.80273855 prediction 0.42206015886221 Functional Loss - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42172266 chr22:42172268 stopgain 0.753 0 23 hm5C_associated_SNPs_88961 0 0 0 0 1 MEI1 chr22:42172271 5'GT 42172271 Upstream 4bp
chr22 29169747 29169747 1 + G A UCEC 29169744 + 29169724 29169764 41 ACTGTAAAAAGAAACACAAGCGAGAGGAGGAGGAGGATGAT ACTGTAAAAAGAAACACAAGCGAAAGGAGGAGGAGGATGAT < 41bp 0.76304113121066 0.55201304753111 0.44348696 0.2573804 prediction 0.422056167359099 Functional Loss - CCDC117 ENSG00000159873 CDS Human protein_coding chr22:29169744 chr22:29169747 nonsynonymous SNV 0.957 0 24 hm5C_associated_SNPs_88963 0 0 1 0 1 CCDC117 chr22:29169766 5'GT 29169766 Upstream 20bp
chr1 44595071 44595071 1 + G A rs181031157 44595068 + 44595048 44595088 41 CTTGAACATGTCTTCATCTTCTGGAAGCTCTGGAGTGCACA CTTGAACATGTCTTCATCTTCTGAAAGCTCTGGAGTGCACA < 41bp 0.800363134043999 0.589336356668099 0.47093672 0.2975729 prediction 0.4220535547518 Functional Loss - KLF17 ENSG00000171872 CDS Human protein_coding chr1:44595068 chr1:44595071 nonsynonymous SNV 0.006 1 24 hm5C_associated_SNPs_88964 0 0 0 0 1 KLF17 chr1:44595025 3'AG 44595025 Downstream 47bp
chr2 62132968 62132968 1 + T C LIHC 62132967 + 62132947 62132987 41 CCGAGGAGTTCCGCCCCTTTCTGGCAAAGATGAGGGGGATT CCGAGGAGTTCCGCCCCTTTCCGGCAAAGATGAGGGGGATT < 41bp 0.711026601866228 0.485440087231424 0.23866424 0.68568635 prediction 0.422053203732457 Functional Loss - COMMD1 ENSG00000173163 CDS Human protein_coding chr2:62132967 chr2:62132968 nonsynonymous SNV 0.652 3 22 hm5C_associated_SNPs_88965 0 0 1 0 1 COMMD1 chr2:62132993 5'GT 62132993 Upstream 26bp
chr2 62132970 62132970 1 + G A UCEC 62132967 + 62132947 62132987 41 CCGAGGAGTTCCGCCCCTTTCTGGCAAAGATGAGGGGGATT CCGAGGAGTTCCGCCCCTTTCTGACAAAGATGAGGGGGATT < 41bp 0.711026601866228 0.463327755118204 0.23866424 0.15363356 prediction 0.422053203732457 Functional Loss - COMMD1 ENSG00000173163 CDS Human protein_coding chr2:62132967 chr2:62132970 nonsynonymous SNV 0.646 0 24 hm5C_associated_SNPs_88966 0 0 1 0 1 COMMD1 chr2:62132993 5'GT 62132993 Upstream 24bp
chrX 51640956 51640956 1 + C T UCEC 51640954 + 51640934 51640974 41 TGTATATTCTCATCAGTACCCCCGAGTCCCTGGCTGGCATA TGTATATTCTCATCAGTACCCCTGAGTCCCTGGCTGGCATA < 41bp 0.711026281243261 0.415391962310217 0.60770494 0.4256897 prediction 0.422052562486521 Functional Loss - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51640954 chrX:51640956 synonymous SNV . 0 23 hm5C_associated_SNPs_88967 0 0 1 0 2 MAGED1 chrX:51640891 3'AG 51640891 Downstream 66bp
chrX 51640956 51640956 1 + C T UCEC 51640954 + 51640934 51640974 41 TGTATATTCTCATCAGTACCCCCGAGTCCCTGGCTGGCATA TGTATATTCTCATCAGTACCCCTGAGTCCCTGGCTGGCATA < 41bp 0.711026281243261 0.415391962310217 0.60770494 0.4256897 prediction 0.422052562486521 Functional Loss - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51640954 chrX:51640956 synonymous SNV . 0 23 hm5C_associated_SNPs_88967 0 0 1 0 2 MAGED1 chrX:51640982 5'GT 51640982 Upstream 27bp
chr4 8472861 8472861 1 + C T LUSC 8472858 + 8472838 8472878 41 ACGAGCTGGACACGGAGACCCTGCGGAGGCTGAAGCGGGAG ACGAGCTGGACACGGAGACCCTGTGGAGGCTGAAGCGGGAG < 41bp 0.766412979508787 0.555387074030326 0.3057027 0.19985765 prediction 0.422051810956923 Functional Loss - TRMT44 ENSG00000155275 CDS Human protein_coding chr4:8472858 chr4:8472861 nonsynonymous SNV 0.787 2 24 hm5C_associated_SNPs_88968 0 0 1 0 2 TRMT44 chr4:8472811 3'AG 8472811 Downstream 51bp
chr4 8472861 8472861 1 + C T LUSC 8472858 + 8472838 8472878 41 ACGAGCTGGACACGGAGACCCTGCGGAGGCTGAAGCGGGAG ACGAGCTGGACACGGAGACCCTGTGGAGGCTGAAGCGGGAG < 41bp 0.766412979508787 0.555387074030326 0.3057027 0.19985765 prediction 0.422051810956923 Functional Loss - TRMT44 ENSG00000155275 CDS Human protein_coding chr4:8472858 chr4:8472861 nonsynonymous SNV 0.787 2 24 hm5C_associated_SNPs_88968 0 0 1 0 2 TRMT44 chr4:8472927 5'GT 8472927 Upstream 67bp
chr1 11808642 11808642 1 + C T COAD 11808640 + 11808620 11808660 41 TCTACCACATGTACCGGGAGCGCGGGGGTGAGCTCCTGGTC TCTACCACATGTACCGGGAGCGTGGGGGTGAGCTCCTGGTC < 41bp 0.820912089169741 0.60988713284209 0.7324255 0.80769014 prediction 0.422049912655301 Functional Loss - AGTRAP ENSG00000177674 CDS Human protein_coding chr1:11808640 chr1:11808642 nonsynonymous SNV 0.878 1 23 hm5C_associated_SNPs_88969 0 0 1 0 2 AGTRAP chr1:11808646 5'GT 11808646 Upstream 5bp
chr1 11808642 11808642 1 + C T COAD 11808640 + 11808620 11808660 41 TCTACCACATGTACCGGGAGCGCGGGGGTGAGCTCCTGGTC TCTACCACATGTACCGGGAGCGTGGGGGTGAGCTCCTGGTC < 41bp 0.820912089169741 0.60988713284209 0.7324255 0.80769014 prediction 0.422049912655301 Functional Loss - AGTRAP ENSG00000177674 CDS Human protein_coding chr1:11808640 chr1:11808642 nonsynonymous SNV 0.878 1 23 hm5C_associated_SNPs_88969 0 0 1 0 2 AGTRAP chr1:11808667 5'GT 11808667 Upstream 26bp
chr1 109707276 109707276 1 + G A SKCM 109707273 + 109707253 109707293 41 GCCTCTCAGCCAACATGGAGCTGGATGACAGTGCTGCTGAG GCCTCTCAGCCAACATGGAGCTGAATGACAGTGCTGCTGAG < 41bp 0.809306578290869 0.598286166152333 0.50431484 0.2628894 prediction 0.422040824277071 Functional Loss - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109707273 chr1:109707276 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_88972 0 0 0 0 1 KIAA1324 chr1:109707313 5'GT 109707313 Upstream 38bp
chr1 197890725 197890725 1 + G T LUAD 197890723 + 197890703 197890743 41 TCAACGGTACGGGCACCGTGCAGAAAGGGCGGCCCCGGAAG TCAACGGTACGGGCACCGTGCATAAAGGGCGGCCCCGGAAG < 41bp 0.91589560829695 0.704875718114233 0.18205497 0.169745 prediction 0.422039780365435 Functional Loss - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197890723 chr1:197890725 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_88973 0 0 0 0 1 LHX9 chr1:197890789 5'GT 197890789 Upstream 65bp
chr9 114411754 114411754 1 + T C KIRC 114411753 + 114411733 114411773 41 TTTTTCAGCTGGTGGAATAGCTACAATAAGGCAATCAGCTA TTTTTCAGCTGGTGGAATAGCCACAATAAGGCAATCAGCTA < 41bp 0.815571396797822 0.604555331349853 0.82924056 0.27453658 prediction 0.422032130895938 Functional Loss - DNAJC25 ENSG00000059769 CDS Human protein_coding chr9:114411753 chr9:114411754 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_88976 0 0 1 0 1 DNAJC25 chr9:114411733 3'AG 114411733 Downstream 22bp
chr16 2257325 2257325 1 + C T rs35003025 2257322 + 2257302 2257342 41 CACATCGATCCCGACGCCAGCTACATGGCAGCTGTCAATAG CACATCGATCCCGACGCCAGCTATATGGCAGCTGTCAATAG < 41bp 0.748306283043811 0.537291344673626 0.1300272 0.09058282 prediction 0.422029876740369 Functional Loss - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2257322 chr16:2257325 synonymous SNV . 0 24 hm5C_associated_SNPs_88977 0 0 1 1 1 MLST8 chr16:2257346 5'GT 2257346 Upstream 22bp
chr16 56867301 56867301 1 + G A PAAD 56867298 + 56867278 56867318 41 GAAGCTGCTTTTAAAGTCCTCTGGACAGAGTGCTCAGCTCC GAAGCTGCTTTTAAAGTCCTCTGAACAGAGTGCTCAGCTCC < 41bp 0.71101335720442 0.463836384918412 0.14556667 0.09417564 prediction 0.42202671440884 Functional Loss - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56867298 chr16:56867301 nonsynonymous SNV 0.885 2 24 hm5C_associated_SNPs_88979 0 0 1 0 1 NUP93 chr16:56867318 5'GT 56867318 Upstream 18bp
chr11 3658489 3658489 1 + C T rs6578405 3658487 + 3658467 3658507 41 TCTGGCAGAGGGAGGGACGCCCCGGCCTCCCGACGGTGCCA TCTGGCAGAGGGAGGGACGCCCTGGCCTCCCGACGGTGCCA < 41bp 0.71101225166245 0.484122089825925 0.38503814 0.24945053 prediction 0.422024503324899 Functional Loss - TRPC2 ENSG00000182048 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3658487 chr11:3658489 . . 0 23 hm5C_associated_SNPs_88980 0 0 0 0 1 TRPC2 chr11:3658391 3'AG 3658391 Downstream 99bp
chr12 113698196 113698196 1 + G A CESC 113698193 + 113698173 113698213 41 ATGGCGGCAGCTATGCCATCCACGACTCCCAGGCCCCCAGT ATGGCGGCAGCTATGCCATCCACAACTCCCAGGCCCCCAGT < 41bp 0.825810657078063 0.614798853333482 0.20766363 0.062012374 prediction 0.42202360748916 Functional Loss - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113698193 chr12:113698196 nonsynonymous SNV 0.104 0 24 hm5C_associated_SNPs_88981 0 0 1 0 1 TPCN1 chr12:113698173 3'AG 113698173 Downstream 24bp
chr3 100039673 100039673 1 + C T STAD 100039671 + 100039651 100039691 41 CTGTTTAAGGGAGATTGTTTCACGGAAAGGATTGGCTTATA CTGTTTAAGGGAGATTGTTTCATGGAAAGGATTGGCTTATA < 41bp 0.857908639139493 0.646902590134974 0.30650407 0.4184569 prediction 0.422012098009038 Functional Loss - TBC1D23 ENSG00000036054 CDS Human protein_coding chr3:100039671 chr3:100039673 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_88987 0 0 1 0 1 TBC1D23 chr3:100039621 3'AG 100039621 Downstream 53bp
chr6 100056719 100056719 1 + G A SKCM 100056716 + 100056696 100056736 41 GAAACTCCCAGGAACAGACTCTGGAAGCTATTGCAGACTTA GAAACTCCCAGGAACAGACTCTGAAAGCTATTGCAGACTTA < 41bp 0.800851802331581 0.589847283955375 0.47034672 0.31390297 prediction 0.422009036752412 Functional Loss - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100056716 chr6:100056719 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_88988 0 0 0 0 1 PRDM13 chr6:100056748 5'GT 100056748 Upstream 30bp
chr18 21739933 21739933 1 + G T BRCA 21739931 + 21739911 21739951 41 AGATGTAGCTAAAAAAAGTTCAGGATCTGGTGACAAATGTG AGATGTAGCTAAAAAAAGTTCATGATCTGGTGACAAATGTG < 41bp 0.792926216555699 0.581925095366125 0.15469864 0.041460335 prediction 0.422002242379148 Functional Loss - CABYR ENSG00000154040 CDS Human protein_coding chr18:21739931 chr18:21739933 stopgain 1.000 0 23 hm5C_associated_SNPs_88993 0 0 0 1 2 CABYR chr18:21739907 3'AG 21739907 Downstream 27bp
chr18 21739933 21739933 1 + G T BRCA 21739931 + 21739911 21739951 41 AGATGTAGCTAAAAAAAGTTCAGGATCTGGTGACAAATGTG AGATGTAGCTAAAAAAAGTTCATGATCTGGTGACAAATGTG < 41bp 0.792926216555699 0.581925095366125 0.15469864 0.041460335 prediction 0.422002242379148 Functional Loss - CABYR ENSG00000154040 CDS Human protein_coding chr18:21739931 chr18:21739933 stopgain 1.000 0 23 hm5C_associated_SNPs_88993 0 0 0 1 2 CABYR chr18:21739910 3'AG 21739910 Downstream 24bp
chr7 92019357 92019357 1 + T C SKCM 92019356 + 92019336 92019376 41 TCTTAAAAACTCGGCGCATTCTCAAGTGTTCTTATCCATAT TCTTAAAAACTCGGCGCATTCCCAAGTGTTCTTATCCATAT < 41bp 0.85311006435127 0.642110056512007 0.22208893 0.047015548 prediction 0.422000015678526 Functional Loss - ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:92019356 chr7:92019357 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_88994 0 0 0 0 2 ANKIB1 chr7:92019285 3'AG 92019285 Downstream 73bp
chr7 92019357 92019357 1 + T C SKCM 92019356 + 92019336 92019376 41 TCTTAAAAACTCGGCGCATTCTCAAGTGTTCTTATCCATAT TCTTAAAAACTCGGCGCATTCCCAAGTGTTCTTATCCATAT < 41bp 0.85311006435127 0.642110056512007 0.22208893 0.047015548 prediction 0.422000015678526 Functional Loss - ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:92019356 chr7:92019357 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_88994 0 0 0 0 2 ANKIB1 chr7:92019430 5'GT 92019430 Upstream 74bp
chr19 36259320 36259320 1 + G A ESCA 36259317 + 36259297 36259337 41 TTTCTCCAGGGAAGCGGATGCCCGATTATCGTTCCTGTTGG TTTCTCCAGGGAAGCGGATGCCCAATTATCGTTCCTGTTGG < 41bp 0.804649960812744 0.593650543598279 0.72372663 0.54542047 prediction 0.421998834428931 Functional Loss - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36259317 chr19:36259320 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_88995 0 0 1 1 1 PROSER3 chr19:36259306 3'AG 36259306 Downstream 15bp
chr16 90023952 90023952 1 + C T UCEC 90023949 + 90023929 90023969 41 TGGCCTCTGACGTCCAGCAGCTGCGGCAGGCGATCGAGGAG TGGCCTCTGACGTCCAGCAGCTGTGGCAGGCGATCGAGGAG < 41bp 0.732603790788546 0.521605808794435 0.5653984 0.36898124 prediction 0.421995963988223 Functional Loss - DEF8 ENSG00000140995 CDS Human protein_coding chr16:90023949 chr16:90023952 nonsynonymous SNV 0.985 3 24 hm5C_associated_SNPs_88996 0 0 1 0 1 DEF8 chr16:90023949 3'AG 90023949 Downstream 4bp
chr19 17337542 17337542 1 + C T HNSC 17337540 + 17337520 17337560 41 CCGCCGCGCGCGGGACACGACGCCCCCCGCAGGACCCGCCC CCGCCGCGCGCGGGACACGACGTCCCCCGCAGGACCCGCCC < 41bp 0.710997747210299 0.461308948702422 0.13220403 0.16796625 prediction 0.421995494420597 Functional Loss - OCEL1 ENSG00000099330 CDS Human protein_coding chr19:17337540 chr19:17337542 nonsynonymous SNV 0.078 1 23 hm5C_associated_SNPs_88997 0 0 0 0 1 OCEL1 chr19:17337502 3'AG 17337502 Downstream 41bp
chr1 162762578 162762578 1 + T C UCEC 162762577 + 162762557 162762597 41 GCTGGCCTCTCACCCCACTGCTGAGGTCACCATTGTCCAGG GCTGGCCTCTCACCCCACTGCCGAGGTCACCATTGTCCAGG < 41bp 0.799760689348804 0.588763654811776 0.8120421 0.8643006 prediction 0.421994069074055 Functional Loss - HSD17B7 ENSG00000132196 CDS Human protein_coding chr1:162762577 chr1:162762578 synonymous SNV . 0 22 hm5C_associated_SNPs_88999 0 0 0 0 1 HSD17B7 chr1:162762652 5'GT 162762652 Upstream 75bp
chr6 133135750 133135750 1 + G A rs539423662 133135747 + 133135727 133135767 41 GAGTCGCGCGGAGGCGGAGGCTTGGGGTAAGTTGAGCGAGG GAGTCGCGCGGAGGCGGAGGCTTAGGGTAAGTTGAGCGAGG < 41bp 0.736216267888645 0.525221150169429 0.89933383 0.88471293 prediction 0.421990235438431 Functional Loss - RPS12 ENSG00000112306 UTR5 Human protein_coding chr6:133135747 chr6:133135750 . . 0 24 hm5C_associated_SNPs_89004 0 0 1 0 1 RPS12 chr6:133135752 5'GT 133135752 Upstream 3bp
chr3 148712025 148712025 1 + T C UCEC 148712024 + 148712004 148712044 41 AGCACAGGACCACCAGGAGGCTGGTCGTGCTCGCCACCCCT AGCACAGGACCACCAGGAGGCCGGTCGTGCTCGCCACCCCT < 41bp 0.7936116290622 0.582618569655569 0.13479647 0.10183227 prediction 0.421986118813262 Functional Loss - GYG1 ENSG00000163754 CDS Human protein_coding chr3:148712024 chr3:148712025 nonsynonymous SNV 0.381 4 22 hm5C_associated_SNPs_89007 0 0 1 0 2 GYG1 chr3:148711929 3'AG 148711929 Downstream 97bp
chr3 148712025 148712025 1 + T C UCEC 148712024 + 148712004 148712044 41 AGCACAGGACCACCAGGAGGCTGGTCGTGCTCGCCACCCCT AGCACAGGACCACCAGGAGGCCGGTCGTGCTCGCCACCCCT < 41bp 0.7936116290622 0.582618569655569 0.13479647 0.10183227 prediction 0.421986118813262 Functional Loss - GYG1 ENSG00000163754 CDS Human protein_coding chr3:148712024 chr3:148712025 nonsynonymous SNV 0.381 4 22 hm5C_associated_SNPs_89007 0 0 1 0 2 GYG1 chr3:148712064 5'GT 148712064 Upstream 40bp
chr6 7580387 7580387 1 + G A SKCM 7580384 + 7580364 7580404 41 AGGAGGCTGCCAAGACCATTCAGGACAAAAATAAGGAGATC AGGAGGCTGCCAAGACCATTCAGAACAAAAATAAGGAGATC < 41bp 0.755139079189553 0.544147077703425 0.45469132 0.15461615 prediction 0.421984002972257 Functional Loss - DSP ENSG00000096696 CDS Human protein_coding chr6:7580384 chr6:7580387 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_89008 0 0 1 0 1 DSP chr6:7580473 5'GT 7580473 Upstream 87bp
chr7 134613584 134613584 1 + C T READ 134613581 + 134613561 134613601 41 GCCGAGCCCGACAGGAACGGCTGCGGCAGAAGCAGGAGGAA GCCGAGCCCGACAGGAACGGCTGTGGCAGAAGCAGGAGGAA < 41bp 0.738560085464837 0.527568389229254 0.6396518 0.4443468 prediction 0.421983392471166 Functional Loss - CALD1 ENSG00000122786 CDS Human protein_coding chr7:134613581 chr7:134613584 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_89009 0 0 1 0 2 CALD1 chr7:134613628 5'GT 134613628 Upstream 45bp
chr7 134613584 134613584 1 + C T READ 134613581 + 134613561 134613601 41 GCCGAGCCCGACAGGAACGGCTGCGGCAGAAGCAGGAGGAA GCCGAGCCCGACAGGAACGGCTGTGGCAGAAGCAGGAGGAA < 41bp 0.738560085464837 0.527568389229254 0.6396518 0.4443468 prediction 0.421983392471166 Functional Loss - CALD1 ENSG00000122786 CDS Human protein_coding chr7:134613581 chr7:134613584 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_89009 0 0 1 0 2 CALD1 chr7:134613651 5'GT 134613651 Upstream 68bp
chr4 1739354 1739354 1 + G A rs28654168 1739351 + 1739331 1739371 41 GGCCCACCCCCAGGTGTTCCCGCGCCTGGGGGCCCACCCCT GGCCCACCCCCAGGTGTTCCCGCACCTGGGGGCCCACCCCT < 41bp 0.834262817665284 0.623271646615422 0.92656505 0.9233442 prediction 0.421982342099725 Functional Loss - TACC3 ENSG00000013810 CDS Human protein_coding chr4:1739351 chr4:1739354 synonymous SNV . 0 24 hm5C_associated_SNPs_89010 0 0 1 0 2 TACC3 chr4:1739325 3'AG 1739325 Downstream 30bp
chr4 1739354 1739354 1 + G A rs28654168 1739351 + 1739331 1739371 41 GGCCCACCCCCAGGTGTTCCCGCGCCTGGGGGCCCACCCCT GGCCCACCCCCAGGTGTTCCCGCACCTGGGGGCCCACCCCT < 41bp 0.834262817665284 0.623271646615422 0.92656505 0.9233442 prediction 0.421982342099725 Functional Loss - TACC3 ENSG00000013810 CDS Human protein_coding chr4:1739351 chr4:1739354 synonymous SNV . 0 24 hm5C_associated_SNPs_89010 0 0 1 0 2 TACC3 chr4:1739429 5'GT 1739429 Upstream 76bp
chr1 230338944 230338944 1 + C T GBM 230338941 + 230338921 230338961 41 GTTGGAGGGACGATGGTCCGCTCCGGGCAGGACCCTTACGC GTTGGAGGGACGATGGTCCGCTCTGGGCAGGACCCTTACGC < 41bp 0.769738473300395 0.558751567212607 0.24645448 0.1959669 prediction 0.421973812175576 Functional Loss - GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230338941 chr1:230338944 synonymous SNV . 0 24 hm5C_associated_SNPs_89012 0 0 1 0 2 GALNT2 chr1:230338883 3'AG 230338883 Downstream 62bp
chr1 230338944 230338944 1 + C T GBM 230338941 + 230338921 230338961 41 GTTGGAGGGACGATGGTCCGCTCCGGGCAGGACCCTTACGC GTTGGAGGGACGATGGTCCGCTCTGGGCAGGACCCTTACGC < 41bp 0.769738473300395 0.558751567212607 0.24645448 0.1959669 prediction 0.421973812175576 Functional Loss - GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230338941 chr1:230338944 synonymous SNV . 0 24 hm5C_associated_SNPs_89012 0 0 1 0 2 GALNT2 chr1:230339036 5'GT 230339036 Upstream 93bp
chrX 153609278 153609278 1 + G A CESC 153609275 + 153609255 153609295 41 TACGGCCGGGACAGTGCCTACCAGAGCATCACGCACTACCG TACGGCCGGGACAGTGCCTACCAAAGCATCACGCACTACCG < 41bp 0.809717400487334 0.598736532338871 0.9318658 0.29855162 prediction 0.421961736296925 Functional Loss - EMD ENSG00000102119 CDS Human protein_coding chrX:153609275 chrX:153609278 synonymous SNV . 0 24 hm5C_associated_SNPs_89013 0 0 1 0 1 EMD chrX:153609242 3'AG 153609242 Downstream 37bp
chr1 170699435 170699435 1 + G A SKCM 170699432 + 170699412 170699452 41 AAATAGATCCTCGTCCCTCCCAAGATGTTGTTTACACGAGG AAATAGATCCTCGTCCCTCCCAAAATGTTGTTTACACGAGG < 41bp 0.754998777633377 0.544020375955817 0.30860585 0.092989504 prediction 0.42195680335512 Functional Loss - PRRX1 ENSG00000116132 CDS Human protein_coding chr1:170699432 chr1:170699435 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_89015 0 0 0 0 2 PRRX1 chr1:170699418 3'AG 170699418 Downstream 18bp
chr1 170699435 170699435 1 + G A SKCM 170699432 + 170699412 170699452 41 AAATAGATCCTCGTCCCTCCCAAGATGTTGTTTACACGAGG AAATAGATCCTCGTCCCTCCCAAAATGTTGTTTACACGAGG < 41bp 0.754998777633377 0.544020375955817 0.30860585 0.092989504 prediction 0.42195680335512 Functional Loss - PRRX1 ENSG00000116132 CDS Human protein_coding chr1:170699432 chr1:170699435 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_89015 0 0 0 0 2 PRRX1 chr1:170699489 5'GT 170699489 Upstream 55bp
chr12 52369228 52369228 1 + C T UCEC 52369225 + 52369205 52369245 41 ACTGCCTGAGCTCGGAGGACCTGCGCAACACCCACTGCTGC ACTGCCTGAGCTCGGAGGACCTGTGCAACACCCACTGCTGC < 41bp 0.710977255307629 0.496013855929078 0.46634263 0.3009821 prediction 0.421954510615258 Functional Loss - ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52369225 chr12:52369228 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_89016 0 0 1 0 1 ACVR1B chr12:52369288 5'GT 52369288 Upstream 61bp
chr4 657639 657639 1 + G A CESC 657636 + 657616 657656 41 ATGGACATCGCCATCATCGCCACGGACCTGGCCCTGTACTT ATGGACATCGCCATCATCGCCACAGACCTGGCCCTGTACTT < 41bp 0.710975063424773 0.478511719528731 0.7084282 0.23945129 prediction 0.421950126849546 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:657636 chr4:657639 synonymous SNV . 0 24 hm5C_associated_SNPs_89017 0 0 0 0 2 PDE6B chr4:657559 3'AG 657559 Downstream 81bp
chr4 657639 657639 1 + G A CESC 657636 + 657616 657656 41 ATGGACATCGCCATCATCGCCACGGACCTGGCCCTGTACTT ATGGACATCGCCATCATCGCCACAGACCTGGCCCTGTACTT < 41bp 0.710975063424773 0.478511719528731 0.7084282 0.23945129 prediction 0.421950126849546 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:657636 chr4:657639 synonymous SNV . 0 24 hm5C_associated_SNPs_89017 0 0 0 0 2 PDE6B chr4:657659 5'GT 657659 Upstream 21bp
chr1 156846302 156846302 1 + G A LUSC 156846299 + 156846279 156846319 41 CGCTTCTTCGGCGTCTGCACCGAGGGCCGCCCCCTGCTCAT CGCTTCTTCGGCGTCTGCACCGAAGGCCGCCCCCTGCTCAT < 41bp 0.839963286460531 0.628989958446127 0.9408289 0.3521211 prediction 0.421946656028809 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156846299 chr1:156846302 synonymous SNV . 0 24 hm5C_associated_SNPs_89018 0 0 0 0 1 NTRK1 chr1:156846364 5'GT 156846364 Upstream 63bp
chr2 242105761 242105761 1 + C T HNSC 242105758 + 242105738 242105778 41 TCTCCCTCTTGCAGAGCAACCGGCTGACCAAGATCGAGGGT TCTCCCTCTTGCAGAGCAACCGGTTGACCAAGATCGAGGGT < 41bp 0.726526102815187 0.515560722406389 0.82860804 0.46943244 prediction 0.421930760817596 Functional Loss - PPP1R7 ENSG00000115685 CDS Human protein_coding chr2:242105758 chr2:242105761 synonymous SNV . 0 24 hm5C_associated_SNPs_89022 0 0 1 0 2 PPP1R7 chr2:242105752 3'AG 242105752 Downstream 10bp
chr2 242105761 242105761 1 + C T HNSC 242105758 + 242105738 242105778 41 TCTCCCTCTTGCAGAGCAACCGGCTGACCAAGATCGAGGGT TCTCCCTCTTGCAGAGCAACCGGTTGACCAAGATCGAGGGT < 41bp 0.726526102815187 0.515560722406389 0.82860804 0.46943244 prediction 0.421930760817596 Functional Loss - PPP1R7 ENSG00000115685 CDS Human protein_coding chr2:242105758 chr2:242105761 synonymous SNV . 0 24 hm5C_associated_SNPs_89022 0 0 1 0 2 PPP1R7 chr2:242105856 5'GT 242105856 Upstream 96bp
chr7 76054389 76054389 1 + G C rs117869702 76054385 + 76054365 76054405 41 GCAGGGTGGAGCCAGCCATCCTGAGACGTCCGTACAGCCCG GCAGGGTGGAGCCAGCCATCCTGACACGTCCGTACAGCCCG < 41bp 0.710965176494221 0.397352983375817 0.8133025 0.16652372 prediction 0.421930352988442 Functional Loss - ZP3 ENSG00000188372 CDS Human protein_coding chr7:76054385 chr7:76054389 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_89023 0 0 0 0 1 ZP3 chr7:76054369 3'AG 76054369 Downstream 21bp
chr11 74545807 74545807 1 + G A UCEC 74545804 + 74545784 74545824 41 GAGCAGAGTCAGAGCAGTTCCAGGCAACAAAGCCAAGGTAC GAGCAGAGTCAGAGCAGTTCCAGACAACAAAGCCAAGGTAC < 41bp 0.710960790590368 0.458371849436856 0.85140425 0.35406417 prediction 0.421921581180736 Functional Loss - RNF169 ENSG00000166439 CDS Human protein_coding chr11:74545804 chr11:74545807 nonsynonymous SNV 0.864 0 24 hm5C_associated_SNPs_89024 0 0 1 0 2 RNF169 chr11:74545721 3'AG 74545721 Downstream 87bp
chr11 74545807 74545807 1 + G A UCEC 74545804 + 74545784 74545824 41 GAGCAGAGTCAGAGCAGTTCCAGGCAACAAAGCCAAGGTAC GAGCAGAGTCAGAGCAGTTCCAGACAACAAAGCCAAGGTAC < 41bp 0.710960790590368 0.458371849436856 0.85140425 0.35406417 prediction 0.421921581180736 Functional Loss - RNF169 ENSG00000166439 CDS Human protein_coding chr11:74545804 chr11:74545807 nonsynonymous SNV 0.864 0 24 hm5C_associated_SNPs_89024 0 0 1 0 2 RNF169 chr11:74545820 5'GT 74545820 Upstream 14bp
chr12 113515260 113515260 1 + C T STAD 113515257 + 113515237 113515277 41 CGGCCCGTGCGGCGCAACTTCTACGACCCGTCGTCGGCGCC CGGCCCGTGCGGCGCAACTTCTATGACCCGTCGTCGGCGCC < 41bp 0.716995622620381 0.506035732411933 0.13419706 0.24516061 prediction 0.421919780416896 Functional Loss - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113515257 chr12:113515260 synonymous SNV . 0 24 hm5C_associated_SNPs_89025 0 0 0 0 1 DTX1 chr12:113515229 3'AG 113515229 Downstream 32bp
chr11 134237201 134237201 1 + G A rs7945169 134237198 + 134237178 134237218 41 TACTGGACGGGGTGGTTTGACTCGTGGGGAGGCCCTCACAA TACTGGACGGGGTGGTTTGACTCATGGGGAGGCCCTCACAA < 41bp 0.819278473642879 0.608319209940597 0.13617077 0.14013004 prediction 0.421918527404563 Functional Loss - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134237198 chr11:134237201 synonymous SNV . 0 24 hm5C_associated_SNPs_89026 0 0 1 0 2 GLB1L2 chr11:134237151 3'AG 134237151 Downstream 51bp
chr11 134237201 134237201 1 + G A rs7945169 134237198 + 134237178 134237218 41 TACTGGACGGGGTGGTTTGACTCGTGGGGAGGCCCTCACAA TACTGGACGGGGTGGTTTGACTCATGGGGAGGCCCTCACAA < 41bp 0.819278473642879 0.608319209940597 0.13617077 0.14013004 prediction 0.421918527404563 Functional Loss - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134237198 chr11:134237201 synonymous SNV . 0 24 hm5C_associated_SNPs_89026 0 0 1 0 2 GLB1L2 chr11:134237235 5'GT 134237235 Upstream 35bp
chr10 51851949 51851949 1 + G A rs200437064 51851946 + 51851926 51851966 41 ACCCTCAGGAGAAGCAAAACCTCGGAAGACACTCAAAGAGA ACCCTCAGGAGAAGCAAAACCTCAGAAGACACTCAAAGAGA < 41bp 0.710958841731658 0.481171098252075 0.16690695 0.071724206 prediction 0.421917683463316 Functional Loss - WASHC2A ENSG00000099290 CDS Human protein_coding chr10:51851946 chr10:51851949 nonsynonymous SNV 0.094 0 24 hm5C_associated_SNPs_89027 0 0 0 0 2 WASHC2A chr10:51851922 3'AG 51851922 Downstream 28bp
chr10 51851949 51851949 1 + G A rs200437064 51851946 + 51851926 51851966 41 ACCCTCAGGAGAAGCAAAACCTCGGAAGACACTCAAAGAGA ACCCTCAGGAGAAGCAAAACCTCAGAAGACACTCAAAGAGA < 41bp 0.710958841731658 0.481171098252075 0.16690695 0.071724206 prediction 0.421917683463316 Functional Loss - WASHC2A ENSG00000099290 CDS Human protein_coding chr10:51851946 chr10:51851949 nonsynonymous SNV 0.094 0 24 hm5C_associated_SNPs_89027 0 0 0 0 2 WASHC2A chr10:51851993 5'GT 51851993 Upstream 45bp
chr19 1422352 1422352 1 + G A UCEC 1422349 + 1422329 1422369 41 GCCACCCTCTCCTTCCAGGTCACGGAGGTAGTCATGATCTA GCCACCCTCTCCTTCCAGGTCACAGAGGTAGTCATGATCTA < 41bp 0.810283960326517 0.599326028229726 0.38711137 0.16988707 prediction 0.421915864193583 Functional Loss - DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1422349 chr19:1422352 synonymous SNV . 0 24 hm5C_associated_SNPs_89029 0 0 1 0 2 DAZAP1 chr19:1422347 3'AG 1422347 Downstream 6bp
chr19 1422352 1422352 1 + G A UCEC 1422349 + 1422329 1422369 41 GCCACCCTCTCCTTCCAGGTCACGGAGGTAGTCATGATCTA GCCACCCTCTCCTTCCAGGTCACAGAGGTAGTCATGATCTA < 41bp 0.810283960326517 0.599326028229726 0.38711137 0.16988707 prediction 0.421915864193583 Functional Loss - DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1422349 chr19:1422352 synonymous SNV . 0 24 hm5C_associated_SNPs_89029 0 0 1 0 2 DAZAP1 chr19:1422395 5'GT 1422395 Upstream 44bp
chr14 52741496 52741496 1 + G A rs41312502 52741493 + 52741473 52741513 41 AAGGATGTCAAGGAGAAAAACAGGACCTCTGAAGAAGCAGA AAGGATGTCAAGGAGAAAAACAGAACCTCTGAAGAAGCAGA < 41bp 0.772705016338094 0.561753930568504 0.8398472 0.7430768 prediction 0.421902171539181 Functional Loss - PTGDR ENSG00000168229 CDS Human protein_coding chr14:52741493 chr14:52741496 synonymous SNV . 0 24 hm5C_associated_SNPs_89031 0 0 0 0 1 PTGDR chr14:52741449 3'AG 52741449 Downstream 48bp
chr22 31796663 31796663 1 + C T BLCA 31796661 + 31796641 31796681 41 CCACTTAGGGCTGCTTAAGGCTCGTCTTGCTAAGCTTCGTC CCACTTAGGGCTGCTTAAGGCTTGTCTTGCTAAGCTTCGTC < 41bp 0.710950240691313 0.421341943847521 0.20327386 0.18386948 prediction 0.421900481382625 Functional Loss - DRG1 ENSG00000185721 CDS Human protein_coding chr22:31796661 chr22:31796663 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_89034 0 0 1 0 2 DRG1 chr22:31796606 3'AG 31796606 Downstream 58bp
chr22 31796663 31796663 1 + C T BLCA 31796661 + 31796641 31796681 41 CCACTTAGGGCTGCTTAAGGCTCGTCTTGCTAAGCTTCGTC CCACTTAGGGCTGCTTAAGGCTTGTCTTGCTAAGCTTCGTC < 41bp 0.710950240691313 0.421341943847521 0.20327386 0.18386948 prediction 0.421900481382625 Functional Loss - DRG1 ENSG00000185721 CDS Human protein_coding chr22:31796661 chr22:31796663 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_89034 0 0 1 0 2 DRG1 chr22:31796729 5'GT 31796729 Upstream 67bp
chr22 31796664 31796664 1 + G A UCEC 31796661 + 31796641 31796681 41 CCACTTAGGGCTGCTTAAGGCTCGTCTTGCTAAGCTTCGTC CCACTTAGGGCTGCTTAAGGCTCATCTTGCTAAGCTTCGTC < 41bp 0.710950240691313 0.469125487543593 0.20327386 0.094466835 prediction 0.421900481382625 Functional Loss - DRG1 ENSG00000185721 CDS Human protein_coding chr22:31796661 chr22:31796664 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_89035 0 0 1 0 2 DRG1 chr22:31796606 3'AG 31796606 Downstream 59bp
chr22 31796664 31796664 1 + G A UCEC 31796661 + 31796641 31796681 41 CCACTTAGGGCTGCTTAAGGCTCGTCTTGCTAAGCTTCGTC CCACTTAGGGCTGCTTAAGGCTCATCTTGCTAAGCTTCGTC < 41bp 0.710950240691313 0.469125487543593 0.20327386 0.094466835 prediction 0.421900481382625 Functional Loss - DRG1 ENSG00000185721 CDS Human protein_coding chr22:31796661 chr22:31796664 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_89035 0 0 1 0 2 DRG1 chr22:31796729 5'GT 31796729 Upstream 66bp
chr6 76369055 76369055 1 + C T UCEC 76369052 + 76369032 76369072 41 AGAGGAAAGTACAACAGAAACGACACTGTAGTACCTATCAG AGAGGAAAGTACAACAGAAACGATACTGTAGTACCTATCAG < 41bp 0.751056745871814 0.540107038657566 0.2184945 0.26788446 prediction 0.421899414428496 Functional Loss - SENP6 ENSG00000112701 CDS Human protein_coding chr6:76369052 chr6:76369055 nonsynonymous SNV 0.956 1 24 hm5C_associated_SNPs_89036 0 0 1 0 2 SENP6 chr6:76368978 3'AG 76368978 Downstream 78bp
chr6 76369055 76369055 1 + C T UCEC 76369052 + 76369032 76369072 41 AGAGGAAAGTACAACAGAAACGACACTGTAGTACCTATCAG AGAGGAAAGTACAACAGAAACGATACTGTAGTACCTATCAG < 41bp 0.751056745871814 0.540107038657566 0.2184945 0.26788446 prediction 0.421899414428496 Functional Loss - SENP6 ENSG00000112701 CDS Human protein_coding chr6:76369052 chr6:76369055 nonsynonymous SNV 0.956 1 24 hm5C_associated_SNPs_89036 0 0 1 0 2 SENP6 chr6:76369123 5'GT 76369123 Upstream 69bp
chr15 48536975 48536975 1 + C T COAD 48536972 + 48536952 48536992 41 GCCTGTGTGGTCCGAGATGCCACCGGGAACATGAATGACAC GCCTGTGTGGTCCGAGATGCCACTGGGAACATGAATGACAC < 41bp 0.710947610068994 0.497693284493639 0.31892532 0.13172448 prediction 0.421895220137987 Functional Loss - SLC12A1 ENSG00000074803 CDS Human protein_coding chr15:48536972 chr15:48536975 synonymous SNV . 0 24 hm5C_associated_SNPs_89037 0 0 0 0 1 SLC12A1 chr15:48536950 3'AG 48536950 Downstream 26bp
chr8 36766906 36766906 1 + G A rs368283762 36766903 + 36766883 36766923 41 TTTGGAGATGCCCACTCAGCCCCGATGGGGCTTCGGAACTT TTTGGAGATGCCCACTCAGCCCCAATGGGGCTTCGGAACTT < 41bp 0.710946403093084 0.474799462752675 0.020109326 0.071735084 prediction 0.421892806186168 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36766903 chr8:36766906 synonymous SNV . 0 24 hm5C_associated_SNPs_89039 0 0 0 0 1 KCNU1 chr8:36766829 3'AG 36766829 Downstream 78bp
chr8 36766905 36766905 1 + C T UCEC 36766903 + 36766883 36766923 41 TTTGGAGATGCCCACTCAGCCCCGATGGGGCTTCGGAACTT TTTGGAGATGCCCACTCAGCCCTGATGGGGCTTCGGAACTT < 41bp 0.710946403093084 0.413873821817254 0.020109326 0.028855234 prediction 0.421892806186168 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36766903 chr8:36766905 nonsynonymous SNV 0.016 0 23 hm5C_associated_SNPs_89040 0 0 0 0 1 KCNU1 chr8:36766829 3'AG 36766829 Downstream 77bp
chr1 65147002 65147002 1 + C T rs3828064 65147000 + 65146980 65147020 41 ATGAAAGGGACGACGACAGCCACGAAGACAGAGGCATCAGT ATGAAAGGGACGACGACAGCCATGAAGACAGAGGCATCAGT < 41bp 0.710944747821537 0.415267834340091 0.09755334 0.28414732 prediction 0.421889495643074 Functional Loss - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65147000 chr1:65147002 synonymous SNV . 0 23 hm5C_associated_SNPs_89042 0 0 0 0 2 CACHD1 chr1:65146941 3'AG 65146941 Downstream 62bp
chr1 65147002 65147002 1 + C T rs3828064 65147000 + 65146980 65147020 41 ATGAAAGGGACGACGACAGCCACGAAGACAGAGGCATCAGT ATGAAAGGGACGACGACAGCCATGAAGACAGAGGCATCAGT < 41bp 0.710944747821537 0.415267834340091 0.09755334 0.28414732 prediction 0.421889495643074 Functional Loss - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65147000 chr1:65147002 synonymous SNV . 0 23 hm5C_associated_SNPs_89042 0 0 0 0 2 CACHD1 chr1:65147018 5'GT 65147018 Upstream 17bp
chr17 26851893 26851893 1 + G T SARC 26851889 + 26851869 26851909 41 TTCGAGGAGATCCCAGTGGACGTGGCGGAGGCCGAGGCCTT TTCGAGGAGATCCCAGTGGACGTGTCGGAGGCCGAGGCCTT < 41bp 0.726439304668845 0.515494948271028 0.8572289 0.37636304 prediction 0.421888712795635 Functional Loss - FOXN1 ENSG00000109101 CDS Human protein_coding chr17:26851889 chr17:26851893 nonsynonymous SNV 0.046 2 25 hm5C_associated_SNPs_89043 0 0 0 0 1 FOXN1 chr17:26851985 5'GT 26851985 Upstream 93bp
chr11 64789222 64789222 1 + C T rs61736632 64789220 + 64789200 64789240 41 AGCTGGACTCCATCCGCAGCCACCACTGGTGCATCCAGGGC AGCTGGACTCCATCCGCAGCCATCACTGGTGCATCCAGGGC < 41bp 0.710942008758101 0.445405305044716 0.14381754 0.16350603 prediction 0.421884017516202 Functional Loss - ARL2 ENSG00000213465 CDS Human protein_coding chr11:64789220 chr11:64789222 synonymous SNV . 0 23 hm5C_associated_SNPs_89044 0 0 1 0 1 ARL2 chr11:64789193 3'AG 64789193 Downstream 30bp
chr19 11657704 11657704 1 + G A LUSC 11657701 + 11657681 11657721 41 CCAAGTATGGGGTGAAGCCCCACGACATTTTTGAGGCCAAC CCAAGTATGGGGTGAAGCCCCACAACATTTTTGAGGCCAAC < 41bp 0.798159478045574 0.587218111154281 0.26059133 0.23034188 prediction 0.421882733782585 Functional Loss - CNN1 ENSG00000130176 CDS Human protein_coding chr19:11657701 chr19:11657704 nonsynonymous SNV 0.979 2 24 hm5C_associated_SNPs_89045 0 0 0 0 2 CNN1 chr19:11657647 3'AG 11657647 Downstream 58bp
chr19 11657704 11657704 1 + G A LUSC 11657701 + 11657681 11657721 41 CCAAGTATGGGGTGAAGCCCCACGACATTTTTGAGGCCAAC CCAAGTATGGGGTGAAGCCCCACAACATTTTTGAGGCCAAC < 41bp 0.798159478045574 0.587218111154281 0.26059133 0.23034188 prediction 0.421882733782585 Functional Loss - CNN1 ENSG00000130176 CDS Human protein_coding chr19:11657701 chr19:11657704 nonsynonymous SNV 0.979 2 24 hm5C_associated_SNPs_89045 0 0 0 0 2 CNN1 chr19:11657784 5'GT 11657784 Upstream 81bp
chrX 70612495 70612495 1 + G A UCEC 70612492 + 70612472 70612512 41 CAAGTGTCTGCTAGAGGTGACTGGGGTGGCAGATCCCACGG CAAGTGTCTGCTAGAGGTGACTGAGGTGGCAGATCCCACGG < 41bp 0.789729127075268 0.578789626952093 0.89297837 0.78942394 prediction 0.421879000246351 Functional Loss - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70612492 chrX:70612495 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_89047 0 0 1 0 2 TAF1 chrX:70612419 3'AG 70612419 Downstream 77bp
chrX 70612495 70612495 1 + G A UCEC 70612492 + 70612472 70612512 41 CAAGTGTCTGCTAGAGGTGACTGGGGTGGCAGATCCCACGG CAAGTGTCTGCTAGAGGTGACTGAGGTGGCAGATCCCACGG < 41bp 0.789729127075268 0.578789626952093 0.89297837 0.78942394 prediction 0.421879000246351 Functional Loss - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70612492 chrX:70612495 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_89047 0 0 1 0 2 TAF1 chrX:70612568 5'GT 70612568 Upstream 74bp
chr2 158980300 158980300 1 + G T LUAD 158980297 + 158980277 158980317 41 TGGAGCACTGTGCTCCTTTTCCAGAGAAAAAAAGTTAGACT TGGAGCACTGTGCTCCTTTTCCATAGAAAAAAAGTTAGACT < 41bp 0.710939018863695 0.32374041676945 0.90172696 0.21072492 prediction 0.421878037727391 Functional Loss - UPP2 ENSG00000007001 CDS Human protein_coding chr2:158980297 chr2:158980300 nonsynonymous SNV 0.976 1 24 hm5C_associated_SNPs_89048 0 0 0 0 1 UPP2 chr2:158980261 3'AG 158980261 Downstream 40bp
chr20 10256184 10256184 1 + G T SARC 10256182 + 10256162 10256202 41 GCAATGAGCTGGAGGAGATGCAGCGAAGGGCTGACCAGTTG GCAATGAGCTGGAGGAGATGCATCGAAGGGCTGACCAGTTG < 41bp 0.911833653177088 0.700900765667122 0.846701 0.21434727 prediction 0.421865775019933 Functional Loss - SNAP25 ENSG00000132639 CDS Human protein_coding chr20:10256182 chr20:10256184 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_89056 0 0 0 0 1 SNAP25 chr20:10256211 5'GT 10256211 Upstream 28bp
chr14 76965096 76965096 1 + G T LUAD 76965093 + 76965073 76965113 41 GGGCCAGGGCTGACTCCCTTCAGGAGTGGAGGCCACTGGAG GGGCCAGGGCTGACTCCCTTCAGTAGTGGAGGCCACTGGAG < 41bp 0.935254642631946 0.724323417912845 0.8990959 0.31056362 prediction 0.421862449438202 Functional Loss - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76965093 chr14:76965096 stopgain . 0 24 hm5C_associated_SNPs_89057 0 0 1 0 1 ESRRB chr14:76965069 3'AG 76965069 Downstream 28bp
chr19 47858343 47858343 1 + G A rs139356591 47858340 + 47858320 47858360 41 AGCACACGTTCGGCGGCCACCAAGATTGTATTCCTGACAGT AGCACACGTTCGGCGGCCACCAAAATTGTATTCCTGACAGT < 41bp 0.81651738059341 0.605588040635826 0.17154518 0.20328316 prediction 0.421858679915168 Functional Loss - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47858340 chr19:47858343 synonymous SNV . 0 24 hm5C_associated_SNPs_89058 0 0 1 0 1 DHX34 chr19:47858296 3'AG 47858296 Downstream 48bp
chr1 22915689 22915689 1 + G A SKCM 22915686 + 22915666 22915706 41 GCCGCTGTGGTCAACATCACCACGAACCAGGCAGGTAGGCG GCCGCTGTGGTCAACATCACCACAAACCAGGCAGGTAGGCG < 41bp 0.798515434136329 0.587588983641543 0.14068612 0.058001667 prediction 0.421852900989572 Functional Loss - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22915686 chr1:22915689 synonymous SNV . 0 24 hm5C_associated_SNPs_89061 0 0 0 0 1 EPHA8 chr1:22915699 5'GT 22915699 Upstream 11bp
chr11 6292311 6292311 1 + C T COAD 6292308 + 6292288 6292328 41 GGCGAAGACAGCGATGGCTGCTACGTGCAACTTCCACGTTC GGCGAAGACAGCGATGGCTGCTATGTGCAACTTCCACGTTC < 41bp 0.727192082138533 0.516265820999151 0.07814404 0.05223736 prediction 0.421852522278765 Functional Loss - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6292308 chr11:6292311 synonymous SNV . 0 24 hm5C_associated_SNPs_89062 0 0 0 0 1 CCKBR chr11:6292241 3'AG 6292241 Downstream 71bp
chr11 65620005 65620005 1 + G A CESC 65620002 + 65619982 65620022 41 ACATGCTGAGGTACTACATGCGTGACTCACAGGCAGCCAAG ACATGCTGAGGTACTACATGCGTAACTCACAGGCAGCCAAG < 41bp 0.71092453776739 0.46068887267626 0.8306071 0.42891872 prediction 0.421849075534779 Functional Loss - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65620002 chr11:65620005 nonsynonymous SNV 0.987 0 24 hm5C_associated_SNPs_89065 0 0 0 0 2 SNX32 chr11:65619936 3'AG 65619936 Downstream 70bp
chr11 65620005 65620005 1 + G A CESC 65620002 + 65619982 65620022 41 ACATGCTGAGGTACTACATGCGTGACTCACAGGCAGCCAAG ACATGCTGAGGTACTACATGCGTAACTCACAGGCAGCCAAG < 41bp 0.71092453776739 0.46068887267626 0.8306071 0.42891872 prediction 0.421849075534779 Functional Loss - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65620002 chr11:65620005 nonsynonymous SNV 0.987 0 24 hm5C_associated_SNPs_89065 0 0 0 0 2 SNX32 chr11:65620022 5'GT 65620022 Upstream 18bp
chr1 181686353 181686353 1 + G A SKCM 181686350 + 181686330 181686370 41 GTTAAATCCCAGGTGTTTTACTGGATTGTGCTGAGCCTTGT GTTAAATCCCAGGTGTTTTACTGAATTGTGCTGAGCCTTGT < 41bp 0.710922268927989 0.494432374765583 0.33763173 0.13396129 prediction 0.421844537855979 Functional Loss - CACNA1E ENSG00000198216 CDS Human protein_coding chr1:181686350 chr1:181686353 stopgain 0.999 1 24 hm5C_associated_SNPs_89067 0 0 0 0 1 CACNA1E chr1:181686438 5'GT 181686438 Upstream 86bp
chrX 48759601 48759601 1 + C T SARC 48759599 + 48759579 48759619 41 ATGAGAAACTAGACAGGGGCCACGACAAGTCAGACCGGGGC ATGAGAAACTAGACAGGGGCCATGACAAGTCAGACCGGGGC < 41bp 0.803972987960986 0.59305551040055 0.053359598 0.08548924 prediction 0.421834955120871 Functional Loss - PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759599 chrX:48759601 synonymous SNV . 0 23 hm5C_associated_SNPs_89068 0 0 1 0 3 PQBP1 chrX:48759510 3'AG 48759510 Downstream 92bp
chrX 48759601 48759601 1 + C T SARC 48759599 + 48759579 48759619 41 ATGAGAAACTAGACAGGGGCCACGACAAGTCAGACCGGGGC ATGAGAAACTAGACAGGGGCCATGACAAGTCAGACCGGGGC < 41bp 0.803972987960986 0.59305551040055 0.053359598 0.08548924 prediction 0.421834955120871 Functional Loss - PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759599 chrX:48759601 synonymous SNV . 0 23 hm5C_associated_SNPs_89068 0 0 1 0 3 PQBP1 chrX:48759566 3'AG 48759566 Downstream 36bp
chrX 48759601 48759601 1 + C T SARC 48759599 + 48759579 48759619 41 ATGAGAAACTAGACAGGGGCCACGACAAGTCAGACCGGGGC ATGAGAAACTAGACAGGGGCCATGACAAGTCAGACCGGGGC < 41bp 0.803972987960986 0.59305551040055 0.053359598 0.08548924 prediction 0.421834955120871 Functional Loss - PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759599 chrX:48759601 synonymous SNV . 0 23 hm5C_associated_SNPs_89068 0 0 1 0 3 PQBP1 chrX:48759661 5'GT 48759661 Upstream 61bp
chr4 152204295 152204295 1 + G A SKCM 152204292 + 152204272 152204312 41 GAGATTACCATTCTGCCCTTCAGGAAGCAGAAGTACCCATT GAGATTACCATTCTGCCCTTCAGAAAGCAGAAGTACCCATT < 41bp 0.710917366455298 0.472934078981557 0.37089518 0.06551346 prediction 0.421834732910597 Functional Loss - PRSS48 ENSG00000189099 CDS Human protein_coding chr4:152204292 chr4:152204295 nonsynonymous SNV 0.181 3 24 hm5C_associated_SNPs_89069 0 0 0 0 1 PRSS48 chr4:152204269 3'AG 152204269 Downstream 27bp
chr10 126172763 126172763 1 + C T COAD 126172761 + 126172741 126172781 41 CACCAACGAGTCGCAGAAGTCCCGGGCAGAGCTGGTGGGGC CACCAACGAGTCGCAGAAGTCCTGGGCAGAGCTGGTGGGGC < 41bp 0.710916982922443 0.429674134122004 0.713563 0.50672984 prediction 0.421833965844886 Functional Loss - LHPP ENSG00000107902 CDS Human protein_coding chr10:126172761 chr10:126172763 nonsynonymous SNV 0.031 3 23 hm5C_associated_SNPs_89072 0 0 1 0 1 LHPP chr10:126172708 3'AG 126172708 Downstream 56bp
chr4 128716930 128716930 1 + C T COAD 128716928 + 128716908 128716948 41 GTTTACTGCCAACAGATAGTCACGAACGTAAGAAATACAAT GTTTACTGCCAACAGATAGTCATGAACGTAAGAAATACAAT < 41bp 0.710913077075439 0.421589475607435 0.3596127 0.41949153 prediction 0.421826154150877 Functional Loss - HSPA4L ENSG00000164070 CDS Human protein_coding chr4:128716928 chr4:128716930 nonsynonymous SNV 0.983 3 23 hm5C_associated_SNPs_89075 0 0 0 0 1 HSPA4L chr4:128716923 3'AG 128716923 Downstream 8bp
chr4 128716931 128716931 1 + G A UCEC 128716928 + 128716908 128716948 41 GTTTACTGCCAACAGATAGTCACGAACGTAAGAAATACAAT GTTTACTGCCAACAGATAGTCACAAACGTAAGAAATACAAT < 41bp 0.710913077075439 0.49181447919613 0.3596127 0.29767048 prediction 0.421826154150877 Functional Loss - HSPA4L ENSG00000164070 CDS Human protein_coding chr4:128716928 chr4:128716931 synonymous SNV . 0 24 hm5C_associated_SNPs_89076 0 0 0 0 1 HSPA4L chr4:128716923 3'AG 128716923 Downstream 9bp
chr3 100059939 100059939 1 + T C rs35533796 100059938 + 100059918 100059958 41 CTCTATCCCTGAAGAGGATGCTGGGAAATTATATAACACCT CTCTATCCCTGAAGAGGATGCCGGGAAATTATATAACACCT < 41bp 0.710912608768418 0.469594095082526 0.23349464 0.5586983 prediction 0.421825217536836 Functional Loss - NIT2 ENSG00000114021 CDS Human protein_coding chr3:100059938 chr3:100059939 synonymous SNV . 0 22 hm5C_associated_SNPs_89077 0 0 0 0 2 NIT2 chr3:100059917 3'AG 100059917 Downstream 23bp
chr3 100059939 100059939 1 + T C rs35533796 100059938 + 100059918 100059958 41 CTCTATCCCTGAAGAGGATGCTGGGAAATTATATAACACCT CTCTATCCCTGAAGAGGATGCCGGGAAATTATATAACACCT < 41bp 0.710912608768418 0.469594095082526 0.23349464 0.5586983 prediction 0.421825217536836 Functional Loss - NIT2 ENSG00000114021 CDS Human protein_coding chr3:100059938 chr3:100059939 synonymous SNV . 0 22 hm5C_associated_SNPs_89077 0 0 0 0 2 NIT2 chr3:100060005 5'GT 100060005 Upstream 67bp
chr4 5468544 5468544 1 + A C THCA 5468540 + 5468520 5468560 41 AAGAACAGATCCAGGGATGGCACAAAGGACAGCTGCCCGCT AAGAACAGATCCAGGGATGGCACACAGGACAGCTGCCCGCT < 41bp 0.710908955911018 0.302127381044091 0.15393773 0.07025412 prediction 0.421817911822036 Functional Loss - STK32B ENSG00000152953 CDS Human protein_coding chr4:5468540 chr4:5468544 nonsynonymous SNV 0.643 2 25 hm5C_associated_SNPs_89081 0 0 0 0 1 STK32B chr4:5468561 5'GT 5468561 Upstream 18bp
chr21 44182312 44182312 1 + C T LUSC 44182310 + 44182290 44182330 41 GAGCCTGAGTGCAACATCTTCTCCAACATCCCACCTGATGG GAGCCTGAGTGCAACATCTTCTTCAACATCCCACCTGATGG < 41bp 0.832335055973743 0.621428148625245 0.95101976 0.037392706 prediction 0.421813814696996 Functional Loss - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44182310 chr21:44182312 nonsynonymous SNV 0.859 1 23 hm5C_associated_SNPs_89082 0 0 1 0 1 PDE9A chr21:44182349 5'GT 44182349 Upstream 38bp
chr13 114502332 114502332 1 + G A SKCM 114502329 + 114502309 114502349 41 TAGGAACCGAGGCCCCTCACCACGGGAAGATGCCAGTTTTA TAGGAACCGAGGCCCCTCACCACAGGAAGATGCCAGTTTTA < 41bp 0.710906004495998 0.460157693151667 0.90896094 0.8156383 prediction 0.421812008991996 Functional Loss - TMEM255B ENSG00000184497 CDS Human protein_coding chr13:114502329 chr13:114502332 synonymous SNV . 0 24 hm5C_associated_SNPs_89084 0 0 0 0 2 TMEM255B chr13:114502312 3'AG 114502312 Downstream 21bp
chr13 114502332 114502332 1 + G A SKCM 114502329 + 114502309 114502349 41 TAGGAACCGAGGCCCCTCACCACGGGAAGATGCCAGTTTTA TAGGAACCGAGGCCCCTCACCACAGGAAGATGCCAGTTTTA < 41bp 0.710906004495998 0.460157693151667 0.90896094 0.8156383 prediction 0.421812008991996 Functional Loss - TMEM255B ENSG00000184497 CDS Human protein_coding chr13:114502329 chr13:114502332 synonymous SNV . 0 24 hm5C_associated_SNPs_89084 0 0 0 0 2 TMEM255B chr13:114502392 5'GT 114502392 Upstream 61bp
chr9 39887023 39887023 1 + A T LUAD 39887019 + 39886999 39887039 41 TTTCCAGCTGGTAGAGAGTGCCGGAGAGGCCTGCAGGAGAC TTTCCAGCTGGTAGAGAGTGCCGGTGAGGCCTGCAGGAGAC < 41bp 0.710905012820871 0.412457009476654 0.8739644 0.65806687 prediction 0.421810025641742 Functional Loss - SPATA31A1 ENSG00000204848 CDS Human other chr9:39887019 chr9:39887023 stopgain . 0 25 hm5C_associated_SNPs_89086 0 0 0 0 2 SPATA31A1 chr9:39887006 3'AG 39887006 Downstream 18bp
chr9 39887023 39887023 1 + A T LUAD 39887019 + 39886999 39887039 41 TTTCCAGCTGGTAGAGAGTGCCGGAGAGGCCTGCAGGAGAC TTTCCAGCTGGTAGAGAGTGCCGGTGAGGCCTGCAGGAGAC < 41bp 0.710905012820871 0.412457009476654 0.8739644 0.65806687 prediction 0.421810025641742 Functional Loss - SPATA31A1 ENSG00000204848 CDS Human other chr9:39887019 chr9:39887023 stopgain . 0 25 hm5C_associated_SNPs_89086 0 0 0 0 2 SPATA31A1 chr9:39887066 5'GT 39887066 Upstream 44bp
chr2 224824312 224824312 1 + G A UCEC 224824309 + 224824289 224824329 41 AAGCTTTTGGACATCGGTTACAGGAAAACTTTTCCTTAGAT AAGCTTTTGGACATCGGTTACAGAAAAACTTTTCCTTAGAT < 41bp 0.763488875503248 0.552588242352331 0.6402348 0.2275691 prediction 0.421801266301834 Functional Loss - MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224824309 chr2:224824312 nonsynonymous SNV 0.980 3 24 hm5C_associated_SNPs_89091 0 0 1 0 1 MRPL44 chr2:224824251 3'AG 224824251 Downstream 62bp
chr2 173832051 173832051 1 + G C CESC 173832050 + 173832030 173832070 41 CGATTTCTGGATGATGAGCACGAGGATGCCCCTTTGCCTAC CGATTTCTGGATGATGAGCACCAGGATGCCCCTTTGCCTAC < 41bp 0.710896746671177 0.405551863318164 0.7338964 0.20091441 prediction 0.421793493342353 Functional Loss - RAPGEF4 ENSG00000091428 CDS Human protein_coding chr2:173832050 chr2:173832051 nonsynonymous SNV 0.818 3 22 hm5C_associated_SNPs_89092 0 0 0 0 1 RAPGEF4 chr2:173831989 3'AG 173831989 Downstream 63bp
chr7 73470749 73470749 1 + G A ESCA 73470746 + 73470726 73470766 41 GTTCCCGGAGTCGGAGGTGTCCCGGGAGTTGGCATTTCCCG GTTCCCGGAGTCGGAGGTGTCCCAGGAGTTGGCATTTCCCG < 41bp 0.756807165559993 0.54591056541442 0.8822149 0.6248166 prediction 0.421793200291147 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73470746 chr7:73470749 synonymous SNV . 0 24 hm5C_associated_SNPs_89093 0 0 0 0 1 ELN chr7:73470765 5'GT 73470765 Upstream 17bp
chr10 75525908 75525908 1 + G T LGG 75525906 + 75525886 75525926 41 GACGTCTCCTACAATGCCATCAGGACTGGTCTTGTTAGGCT GACGTCTCCTACAATGCCATCATGACTGGTCTTGTTAGGCT < 41bp 0.71089583499631 0.365650932824813 0.22943375 0.06213966 prediction 0.421791669992619 Functional Loss - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75525906 chr10:75525908 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_89094 0 0 1 0 2 SEC24C chr10:75525844 3'AG 75525844 Downstream 65bp
chr10 75525908 75525908 1 + G T LGG 75525906 + 75525886 75525926 41 GACGTCTCCTACAATGCCATCAGGACTGGTCTTGTTAGGCT GACGTCTCCTACAATGCCATCATGACTGGTCTTGTTAGGCT < 41bp 0.71089583499631 0.365650932824813 0.22943375 0.06213966 prediction 0.421791669992619 Functional Loss - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75525906 chr10:75525908 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_89094 0 0 1 0 2 SEC24C chr10:75525968 5'GT 75525968 Upstream 61bp
chrX 150840695 150840695 1 + A T rs202190429 150840691 + 150840671 150840711 41 AAGAACAACACCTGAAGGAGCAGCAGCGGCAGCTGCGGGAG AAGAACAACACCTGAAGGAGCAGCTGCGGCAGCTGCGGGAG < 41bp 0.892466906318669 0.681571174544166 0.57523865 0.67009175 prediction 0.421791463549006 Functional Loss - PASD1 ENSG00000166049 CDS Human protein_coding chrX:150840691 chrX:150840695 nonsynonymous SNV 0.003 1 25 hm5C_associated_SNPs_89095 0 0 0 0 1 PASD1 chrX:150840655 3'AG 150840655 Downstream 41bp
chr19 39759403 39759403 1 + G A PRAD 39759400 + 39759380 39759420 41 CAGTTCCTGTCGCCAGGCTCCACGGGGCTCTCCCGGATGCA CAGTTCCTGTCGCCAGGCTCCACAGGGCTCTCCCGGATGCA < 41bp 0.823072444352698 0.612177551890227 0.85707897 0.74475276 prediction 0.421789784924943 Functional Loss - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39759400 chr19:39759403 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_89096 0 0 0 0 2 IFNL2 chr19:39759317 3'AG 39759317 Downstream 87bp
chr19 39759403 39759403 1 + G A PRAD 39759400 + 39759380 39759420 41 CAGTTCCTGTCGCCAGGCTCCACGGGGCTCTCCCGGATGCA CAGTTCCTGTCGCCAGGCTCCACAGGGCTCTCCCGGATGCA < 41bp 0.823072444352698 0.612177551890227 0.85707897 0.74475276 prediction 0.421789784924943 Functional Loss - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39759400 chr19:39759403 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_89096 0 0 0 0 2 IFNL2 chr19:39759498 5'GT 39759498 Upstream 96bp
chr10 118354277 118354277 1 + C T CESC 118354274 + 118354254 118354294 41 GTGGAGGAGGTGAACTGCATCTGCGTGGACTGGAAGAAGGG GTGGAGGAGGTGAACTGCATCTGTGTGGACTGGAAGAAGGG < 41bp 0.765620035398227 0.554726851666616 0.19744366 0.1679709 prediction 0.421786367463221 Functional Loss - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118354274 chr10:118354277 synonymous SNV . 0 24 hm5C_associated_SNPs_89097 0 0 0 0 2 PNLIPRP1 chr10:118354242 3'AG 118354242 Downstream 36bp
chr10 118354277 118354277 1 + C T CESC 118354274 + 118354254 118354294 41 GTGGAGGAGGTGAACTGCATCTGCGTGGACTGGAAGAAGGG GTGGAGGAGGTGAACTGCATCTGTGTGGACTGGAAGAAGGG < 41bp 0.765620035398227 0.554726851666616 0.19744366 0.1679709 prediction 0.421786367463221 Functional Loss - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118354274 chr10:118354277 synonymous SNV . 0 24 hm5C_associated_SNPs_89097 0 0 0 0 2 PNLIPRP1 chr10:118354376 5'GT 118354376 Upstream 100bp
chr7 98249051 98249051 1 + C T SKCM 98249048 + 98249028 98249068 41 GGGAGCTGGAGAGGCAGCTTCTGCGCAAGGTGGCAGAGCTG GGGAGCTGGAGAGGCAGCTTCTGTGCAAGGTGGCAGAGCTG < 41bp 0.752637067092253 0.541747472914065 0.4430349 0.4063236 prediction 0.421779188356376 Functional Loss - NPTX2 ENSG00000106236 CDS Human protein_coding chr7:98249048 chr7:98249051 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_89099 0 0 1 0 1 NPTX2 chr7:98248955 3'AG 98248955 Downstream 97bp
chr16 68835779 68835779 1 + C T STAD 68835776 + 68835756 68835796 41 TGAATACAGTGGGGCACCACCACCGCCCCCCGCCCCATCAG TGAATACAGTGGGGCACCACCACTGCCCCCCGCCCCATCAG < 41bp 0.72521312739301 0.514325559820269 0.27586085 0.14708698 prediction 0.421775135145483 Functional Loss - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68835776 chr16:68835779 nonsynonymous SNV 0.015 2 24 hm5C_associated_SNPs_89100 1 0 0 0 1 CDH1 chr16:68835796 5'GT 68835796 Upstream 18bp
chr20 31676787 31676787 1 + C T UCEC 31676785 + 31676765 31676805 41 TCCTTAGGCTTCTCCCCAATCTCGTGGACAATTTAGTGAAC TCCTTAGGCTTCTCCCCAATCTTGTGGACAATTTAGTGAAC < 41bp 0.710887162422252 0.423123976802214 0.13055876 0.17914656 prediction 0.421774324844505 Functional Loss - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31676785 chr20:31676787 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_89101 0 0 0 0 2 BPIFB4 chr20:31676772 3'AG 31676772 Downstream 16bp
chr20 31676787 31676787 1 + C T UCEC 31676785 + 31676765 31676805 41 TCCTTAGGCTTCTCCCCAATCTCGTGGACAATTTAGTGAAC TCCTTAGGCTTCTCCCCAATCTTGTGGACAATTTAGTGAAC < 41bp 0.710887162422252 0.423123976802214 0.13055876 0.17914656 prediction 0.421774324844505 Functional Loss - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31676785 chr20:31676787 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_89101 0 0 0 0 2 BPIFB4 chr20:31676835 5'GT 31676835 Upstream 49bp
chrX 129058844 129058844 1 + G A SKCM 129058841 + 129058821 129058861 41 TTGAAGGAAAACCATCAGTCCAGGAAGCAAAAAGCAAGTTC TTGAAGGAAAACCATCAGTCCAGAAAGCAAAAAGCAAGTTC < 41bp 0.795321855641444 0.584434807155947 0.15951273 0.2045975 prediction 0.421774096970994 Functional Loss - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129058841 chrX:129058844 synonymous SNV . 0 24 hm5C_associated_SNPs_89102 0 0 1 0 1 UTP14A chrX:129058771 3'AG 129058771 Downstream 74bp
chr11 1955025 1955025 1 + G T UCEC 1955022 + 1955002 1955042 41 ATCGACAGCCACTTTGAAGCCCGGAAGAAGGAGGAGGAGGA ATCGACAGCCACTTTGAAGCCCGTAAGAAGGAGGAGGAGGA < 41bp 0.710885945610857 0.334268817462997 0.29697818 0.18822378 prediction 0.421771891221714 Functional Loss - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1955022 chr11:1955025 synonymous SNV . 0 24 hm5C_associated_SNPs_89103 0 0 0 0 2 TNNT3 chr11:1954951 3'AG 1954951 Downstream 75bp
chr11 1955025 1955025 1 + G T UCEC 1955022 + 1955002 1955042 41 ATCGACAGCCACTTTGAAGCCCGGAAGAAGGAGGAGGAGGA ATCGACAGCCACTTTGAAGCCCGTAAGAAGGAGGAGGAGGA < 41bp 0.710885945610857 0.334268817462997 0.29697818 0.18822378 prediction 0.421771891221714 Functional Loss - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1955022 chr11:1955025 synonymous SNV . 0 24 hm5C_associated_SNPs_89103 0 0 0 0 2 TNNT3 chr11:1955067 5'GT 1955067 Upstream 43bp
chr7 100466448 100466448 1 + G T SARC 100466445 + 100466425 100466465 41 AGAGGAAGCTGCTGGGGTCTCTGGCCCTGCAGGAAGAGGAA AGAGGAAGCTGCTGGGGTCTCTGTCCCTGCAGGAAGAGGAA < 41bp 0.710870751169826 0.308359118263257 0.853863 0.6627652 prediction 0.421741502339652 Functional Loss - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100466445 chr7:100466448 nonsynonymous SNV 0.309 0 24 hm5C_associated_SNPs_89108 0 0 0 0 2 TRIP6 chr7:100466364 3'AG 100466364 Downstream 85bp
chr7 100466448 100466448 1 + G T SARC 100466445 + 100466425 100466465 41 AGAGGAAGCTGCTGGGGTCTCTGGCCCTGCAGGAAGAGGAA AGAGGAAGCTGCTGGGGTCTCTGTCCCTGCAGGAAGAGGAA < 41bp 0.710870751169826 0.308359118263257 0.853863 0.6627652 prediction 0.421741502339652 Functional Loss - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100466445 chr7:100466448 nonsynonymous SNV 0.309 0 24 hm5C_associated_SNPs_89108 0 0 0 0 2 TRIP6 chr7:100466488 5'GT 100466488 Upstream 41bp
chr17 7339208 7339208 1 + G T LUSC 7339205 + 7339185 7339225 41 AACCGCATGGCTTCCGCAGTCTGGGGGAGTGCCCCCTGGTG AACCGCATGGCTTCCGCAGTCTGTGGGAGTGCCCCCTGGTG < 41bp 0.934344304099014 0.723476658253513 0.88440466 0.33870953 prediction 0.421735291691001 Functional Loss - TMEM102 ENSG00000181284 CDS Human processed_transcript chr17:7339205 chr17:7339208 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_89112 0 0 0 0 1 TMEM102 chr17:7339172 3'AG 7339172 Downstream 37bp
chr11 605710 605710 1 + C T COAD 605707 + 605687 605727 41 CAGCCCGTGGCCAGGCCCGTCTCCGTGGGGCTTTCCAGGTG CAGCCCGTGGCCAGGCCCGTCTCTGTGGGGCTTTCCAGGTG < 41bp 0.710866671419422 0.495108375827242 0.904625 0.37477964 prediction 0.421733342838843 Functional Loss - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:605707 chr11:605710 synonymous SNV . 0 24 hm5C_associated_SNPs_89113 0 0 1 0 1 PHRF1 chr11:605724 5'GT 605724 Upstream 15bp
chr1 240286514 240286514 1 + G A LUSC 240286511 + 240286491 240286531 41 TGGAGAAGCTGTTCAGCCAGCAGGAGAACGGGCCTCCAGAA TGGAGAAGCTGTTCAGCCAGCAGAAGAACGGGCCTCCAGAA < 41bp 0.792428205384222 0.581566729663684 0.91287243 0.90403986 prediction 0.421722951441077 Functional Loss - FMN2 ENSG00000155816 CDS Human protein_coding chr1:240286511 chr1:240286514 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_89120 0 0 0 0 1 FMN2 chr1:240286479 3'AG 240286479 Downstream 36bp
chr10 118960727 118960727 1 + G T LUSC 118960723 + 118960703 118960743 41 ATCTGCAGAAGGTGAAGCCTCAGTGGTTTAACAGGACCACA ATCTGCAGAAGGTGAAGCCTCAGTTGTTTAACAGGACCACA < 41bp 0.710855513377419 0.499714266870229 0.41526276 0.2960982 prediction 0.421711026754839 Functional Loss - KCNK18 ENSG00000186795 CDS Human protein_coding chr10:118960723 chr10:118960727 nonsynonymous SNV 0.194 2 25 hm5C_associated_SNPs_89124 0 0 0 0 2 KCNK18 chr10:118960670 3'AG 118960670 Downstream 58bp
chr10 118960727 118960727 1 + G T LUSC 118960723 + 118960703 118960743 41 ATCTGCAGAAGGTGAAGCCTCAGTGGTTTAACAGGACCACA ATCTGCAGAAGGTGAAGCCTCAGTTGTTTAACAGGACCACA < 41bp 0.710855513377419 0.499714266870229 0.41526276 0.2960982 prediction 0.421711026754839 Functional Loss - KCNK18 ENSG00000186795 CDS Human protein_coding chr10:118960723 chr10:118960727 nonsynonymous SNV 0.194 2 25 hm5C_associated_SNPs_89124 0 0 0 0 2 KCNK18 chr10:118960798 5'GT 118960798 Upstream 72bp
chr2 211456652 211456652 1 + T C LIHC 211456651 + 211456631 211456671 41 GACAACACCCTCCCTGCTGGCTGGAAACCACTTTTTGTGAA GACAACACCCTCCCTGCTGGCCGGAAACCACTTTTTGTGAA < 41bp 0.710850262391716 0.455673743225835 0.16266212 0.24985507 prediction 0.421700524783432 Functional Loss - CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456651 chr2:211456652 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_89127 0 0 0 0 2 CPS1 chr2:211456555 3'AG 211456555 Downstream 98bp
chr2 211456652 211456652 1 + T C LIHC 211456651 + 211456631 211456671 41 GACAACACCCTCCCTGCTGGCTGGAAACCACTTTTTGTGAA GACAACACCCTCCCTGCTGGCCGGAAACCACTTTTTGTGAA < 41bp 0.710850262391716 0.455673743225835 0.16266212 0.24985507 prediction 0.421700524783432 Functional Loss - CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456651 chr2:211456652 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_89127 0 0 0 0 2 CPS1 chr2:211456693 5'GT 211456693 Upstream 42bp
chr6 44144683 44144683 1 + C T LUAD 44144680 + 44144660 44144700 41 AGCTACTGGCACACCACCTTCTACGAGGGCAGCTGGCGCAG AGCTACTGGCACACCACCTTCTATGAGGGCAGCTGGCGCAG < 41bp 0.761635977005409 0.550789074090767 0.4268688 0.40570685 prediction 0.421693805829282 Functional Loss - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44144680 chr6:44144683 synonymous SNV . 0 24 hm5C_associated_SNPs_89132 0 0 0 0 1 CAPN11 chr6:44144735 5'GT 44144735 Upstream 53bp
chr11 94328535 94328535 1 + G A STAD 94328532 + 94328512 94328552 41 GAAGGCTGTGGCTGAAAAGACACGTCTCAGTCCTTCAGGCC GAAGGCTGTGGCTGAAAAGACACATCTCAGTCCTTCAGGCC < 41bp 0.710843312305692 0.451961358342534 0.32566702 0.16204348 prediction 0.421686624611385 Functional Loss - PIWIL4 ENSG00000134627 CDS Human protein_coding chr11:94328532 chr11:94328535 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_89134 0 0 0 1 2 PIWIL4 chr11:94328475 3'AG 94328475 Downstream 61bp
chr11 94328535 94328535 1 + G A STAD 94328532 + 94328512 94328552 41 GAAGGCTGTGGCTGAAAAGACACGTCTCAGTCCTTCAGGCC GAAGGCTGTGGCTGAAAAGACACATCTCAGTCCTTCAGGCC < 41bp 0.710843312305692 0.451961358342534 0.32566702 0.16204348 prediction 0.421686624611385 Functional Loss - PIWIL4 ENSG00000134627 CDS Human protein_coding chr11:94328532 chr11:94328535 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_89134 0 0 0 1 2 PIWIL4 chr11:94328592 5'GT 94328592 Upstream 58bp
chr19 8431200 8431200 1 + C T STAD 8431197 + 8431177 8431217 41 CGGCTCACAATGTCAGCCGCCTGCACCGTGAGTGTCTGCCC CGGCTCACAATGTCAGCCGCCTGTACCGTGAGTGTCTGCCC < 41bp 0.710839798187497 0.499275229965194 0.09625697 0.052458674 prediction 0.421679596374995 Functional Loss - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8431197 chr19:8431200 nonsynonymous SNV 0.095 0 24 hm5C_associated_SNPs_89136 0 0 0 0 1 ANGPTL4 chr19:8431203 5'GT 8431203 Upstream 4bp
chr12 4872425 4872425 1 + G T LUSC 4872423 + 4872403 4872443 41 GGCGTTTTATTTACAGAACTCTGGAATAGATTTTGGAGACG GGCGTTTTATTTACAGAACTCTTGAATAGATTTTGGAGACG < 41bp 0.71083885376307 0.380572754679197 0.12820694 0.0554249 prediction 0.42167770752614 Functional Loss - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4872423 chr12:4872425 stopgain 0.058 1 23 hm5C_associated_SNPs_89137 0 0 0 0 1 GALNT8 chr12:4872419 3'AG 4872419 Downstream 7bp
chr3 167506983 167506983 1 + G T LUAD 167506981 + 167506961 167507001 41 GGCTACAGGGGCCACTTTCCCTGAGGAAGCCATTGCTGACT GGCTACAGGGGCCACTTTCCCTTAGGAAGCCATTGCTGACT < 41bp 0.907469107464305 0.696632301619006 0.36703092 0.07784665 prediction 0.421673611690597 Functional Loss - SERPINI1 ENSG00000163536 CDS Human protein_coding chr3:167506981 chr3:167506983 stopgain 0.019 1 23 hm5C_associated_SNPs_89140 0 0 0 0 1 SERPINI1 chr3:167506899 3'AG 167506899 Downstream 85bp
chr12 56630996 56630996 1 + G A PRAD 56630993 + 56630973 56631013 41 GGCGGCTGCTGCTGCTGAGCCTCGTGTCTGGAGCCCTGGGA GGCGGCTGCTGCTGCTGAGCCTCATGTCTGGAGCCCTGGGA < 41bp 0.818981662507237 0.608146738257228 0.3794839 0.29868236 prediction 0.42166984850002 Functional Loss - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56630993 chr12:56630996 nonsynonymous SNV 0.805 4 24 hm5C_associated_SNPs_89142 0 0 0 0 1 SLC39A5 chr12:56630934 3'AG 56630934 Downstream 63bp
chr5 6753016 6753016 1 + G A LUAD 6753013 + 6752993 6753033 41 TTACTATACCTCCACCGACCCTAGGGGTTGCTCCTGTTCCT TTACTATACCTCCACCGACCCTAAGGGTTGCTCCTGTTCCT < 41bp 0.710834488859545 0.456636592252529 0.15606004 0.02486968 prediction 0.42166897771909 Functional Loss - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6753013 chr5:6753016 nonsynonymous SNV 0.903 2 24 hm5C_associated_SNPs_89143 0 0 1 0 1 PAPD7 chr5:6752986 3'AG 6752986 Downstream 31bp
chr17 38133080 38133080 1 + G A SKCM 38133077 + 38133057 38133097 41 GATTCCCTCCAGGTGGAGAGCACGATGGAACAGAACTTCCT GATTCCCTCCAGGTGGAGAGCACAATGGAACAGAACTTCCT < 41bp 0.774678326465096 0.563846772108948 0.30060446 0.2175864 prediction 0.421663108712296 Functional Loss - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38133077 chr17:38133080 synonymous SNV . 0 24 hm5C_associated_SNPs_89146 0 0 0 0 1 GSDMA chr17:38133069 3'AG 38133069 Downstream 12bp
chr12 113866252 113866252 1 + G A UCEC 113866249 + 113866229 113866269 41 CCAAGAAGGGATGCAGACACCTGGTGTGCTCCTCAGGTGAC CCAAGAAGGGATGCAGACACCTGATGTGCTCCTCAGGTGAC < 41bp 0.801399936562551 0.590569074676742 0.46241105 0.45322508 prediction 0.421661723771618 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113866249 chr12:113866252 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_89148 0 0 0 0 2 SDSL chr12:113866225 3'AG 113866225 Downstream 28bp
chr12 113866252 113866252 1 + G A UCEC 113866249 + 113866229 113866269 41 CCAAGAAGGGATGCAGACACCTGGTGTGCTCCTCAGGTGAC CCAAGAAGGGATGCAGACACCTGATGTGCTCCTCAGGTGAC < 41bp 0.801399936562551 0.590569074676742 0.46241105 0.45322508 prediction 0.421661723771618 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113866249 chr12:113866252 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_89148 0 0 0 0 2 SDSL chr12:113866264 5'GT 113866264 Upstream 13bp
chr17 11461117 11461117 1 + C T DLBC 11461115 + 11461095 11461135 41 ACATGAGACGGCGGCACCTGCCCGACCTGGCTGCCCGCGGC ACATGAGACGGCGGCACCTGCCTGACCTGGCTGCCCGCGGC < 41bp 0.710826343169971 0.446336739547377 0.15309846 0.1232492 prediction 0.421652686339941 Functional Loss - SHISA6 ENSG00000188803 CDS Human protein_coding chr17:11461115 chr17:11461117 synonymous SNV . 0 23 hm5C_associated_SNPs_89150 0 0 0 0 1 SHISA6 chr17:11461071 3'AG 11461071 Downstream 47bp
chr8 67976717 67976717 1 + A T LIHC 67976713 + 67976693 67976733 41 GCACTGTGTGTCTCCCCGGACGCGAGCCCGCTCCCCTGAGT GCACTGTGTGTCTCCCCGGACGCGTGCCCGCTCCCCTGAGT < 41bp 0.877524887899179 0.66670167540136 0.3244633 0.21864808 prediction 0.421646424995637 Functional Loss - CSPP1 ENSG00000104218 CDS Human protein_coding chr8:67976713 chr8:67976717 synonymous SNV . 0 25 hm5C_associated_SNPs_89152 0 0 1 0 1 CSPP1 chr8:67976731 5'GT 67976731 Upstream 15bp
chr21 45507714 45507714 1 + G A UCEC 45507711 + 45507691 45507731 41 CTTTACCTTCAGCCCCAGCACTCGGAGGGGAGAGTGACATG CTTTACCTTCAGCCCCAGCACTCAGAGGGGAGAGTGACATG < 41bp 0.807187391309791 0.596366273258646 0.31370038 0.13994667 prediction 0.421642236102289 Functional Loss - TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45507711 chr21:45507714 nonsynonymous SNV 0.020 0 24 hm5C_associated_SNPs_89154 0 0 1 0 2 TRAPPC10 chr21:45507703 3'AG 45507703 Downstream 12bp
chr21 45507714 45507714 1 + G A UCEC 45507711 + 45507691 45507731 41 CTTTACCTTCAGCCCCAGCACTCGGAGGGGAGAGTGACATG CTTTACCTTCAGCCCCAGCACTCAGAGGGGAGAGTGACATG < 41bp 0.807187391309791 0.596366273258646 0.31370038 0.13994667 prediction 0.421642236102289 Functional Loss - TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45507711 chr21:45507714 nonsynonymous SNV 0.020 0 24 hm5C_associated_SNPs_89154 0 0 1 0 2 TRAPPC10 chr21:45507809 5'GT 45507809 Upstream 96bp
chr11 89774232 89774232 1 + G T COAD 89774230 + 89774210 89774250 41 TTTTTGCAGTGCATATTACTCTGCATCATGAAGAAGCCAAC TTTTTGCAGTGCATATTACTCTTCATCATGAAGAAGCCAAC < 41bp 0.710812648847578 0.399753483312218 0.07757193 0.0310888 prediction 0.421625297695156 Functional Loss - TRIM49C ENSG00000204449 CDS Human protein_coding chr11:89774230 chr11:89774232 synonymous SNV . 0 23 hm5C_associated_SNPs_89158 0 0 0 0 1 TRIM49C chr11:89774219 3'AG 89774219 Downstream 14bp
chr22 44385028 44385028 1 + C T COAD 44385025 + 44385005 44385045 41 GGAGAAGCGTACTGGGCCGGCGGCCTGCACCTCTACACCCC GGAGAAGCGTACTGGGCCGGCGGTCTGCACCTCTACACCCC < 41bp 0.718044888515648 0.50724020163239 0.15259582 0.1342969 prediction 0.421609373766515 Functional Loss - SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44385025 chr22:44385028 synonymous SNV . 0 24 hm5C_associated_SNPs_89163 0 0 1 0 1 SAMM50 chr22:44384991 3'AG 44384991 Downstream 38bp
chr16 57608775 57608775 1 + C T COAD 57608772 + 57608752 57608792 41 CACAGTGTCCTGGTCATGGGCTACGGCGGCCTCACGTCCCT CACAGTGTCCTGGTCATGGGCTATGGCGGCCTCACGTCCCT < 41bp 0.710802090075735 0.495938548702378 0.33742613 0.3933015 prediction 0.421604180151471 Functional Loss - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57608772 chr16:57608775 synonymous SNV . 0 24 hm5C_associated_SNPs_89166 0 0 0 0 1 ADGRG5 chr16:57608727 3'AG 57608727 Downstream 49bp
chr1 28176633 28176633 1 + G T rs35775135 28176631 + 28176611 28176651 41 GTGTGGAGGGCCCTGGCTCCCTGGGCCTGGAGGAATCAGGG GTGTGGAGGGCCCTGGCTCCCTTGGCCTGGAGGAATCAGGG < 41bp 0.911058539471325 0.700265001308362 0.35871935 0.09561315 prediction 0.421587076325926 Functional Loss - PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28176631 chr1:28176633 synonymous SNV . 0 23 hm5C_associated_SNPs_89170 0 0 1 1 1 PPP1R8 chr1:28176604 3'AG 28176604 Downstream 30bp
chr7 123514896 123514896 1 + G T rs6949082 123514894 + 123514874 123514914 41 TTGGGGAGACATGAATTTAACTGCATCCAAGGTAAGTCAGT TTGGGGAGACATGAATTTAACTTCATCCAAGGTAAGTCAGT < 41bp 0.71078460570291 0.388088190098243 0.14576069 0.14829162 prediction 0.421569211405819 Functional Loss - HYAL4 ENSG00000106302 CDS Human protein_coding chr7:123514894 chr7:123514896 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_89172 0 0 0 0 2 HYAL4 chr7:123514815 3'AG 123514815 Downstream 82bp
chr7 123514896 123514896 1 + G T rs6949082 123514894 + 123514874 123514914 41 TTGGGGAGACATGAATTTAACTGCATCCAAGGTAAGTCAGT TTGGGGAGACATGAATTTAACTTCATCCAAGGTAAGTCAGT < 41bp 0.71078460570291 0.388088190098243 0.14576069 0.14829162 prediction 0.421569211405819 Functional Loss - HYAL4 ENSG00000106302 CDS Human protein_coding chr7:123514894 chr7:123514896 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_89172 0 0 0 0 2 HYAL4 chr7:123514904 5'GT 123514904 Upstream 9bp
chr19 5110734 5110734 1 + G A COAD 5110731 + 5110711 5110751 41 TGGAAGCAGGGCAAGGACCTCACGGTGCTGGACCACACGCG TGGAAGCAGGGCAAGGACCTCACAGTGCTGGACCACACGCG < 41bp 0.820147021327286 0.609369890626635 0.88342977 0.81214046 prediction 0.421554261401302 Functional Loss - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5110731 chr19:5110734 synonymous SNV . 0 24 hm5C_associated_SNPs_89176 0 0 1 0 1 KDM4B chr19:5110829 5'GT 5110829 Upstream 96bp
chr12 4702268 4702268 1 + C T UCEC 4702266 + 4702246 4702286 41 TGGGTCTTGAAGCCAAGAAGCTCGACACGGCTCCTGAGAAA TGGGTCTTGAAGCCAAGAAGCTTGACACGGCTCCTGAGAAA < 41bp 0.875490368050762 0.664717642953862 0.50621957 0.42765835 prediction 0.4215454501938 Functional Loss - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4702266 chr12:4702268 synonymous SNV . 0 23 hm5C_associated_SNPs_89178 0 0 1 0 1 DYRK4 chr12:4702331 5'GT 4702331 Upstream 64bp
chrX 48649665 48649665 1 + C T STAD 48649663 + 48649643 48649683 41 GCAGCAGCTTCCTCCACTGCCCCGAGCACAGCCACCGCTGC GCAGCAGCTTCCTCCACTGCCCTGAGCACAGCCACCGCTGC < 41bp 0.832264829957643 0.621492928211244 0.16152671 0.16377804 prediction 0.421543803492797 Functional Loss - GATA1 ENSG00000102145 CDS Human protein_coding chrX:48649663 chrX:48649665 nonsynonymous SNV 0.790 2 23 hm5C_associated_SNPs_89179 0 0 0 0 1 GATA1 chrX:48649736 5'GT 48649736 Upstream 72bp
chr7 42972109 42972109 1 + C T UCEC 42972107 + 42972087 42972127 41 CCGGCCGGGCTTTCCCAGTCCTCCGTGGGGTAGGTAAAGAA CCGGCCGGGCTTTCCCAGTCCTTCGTGGGGTAGGTAAAGAA < 41bp 0.81247447083233 0.601706260456214 0.08595878 0.04150182 prediction 0.421536420752232 Functional Loss - MRPL32 ENSG00000106591 CDS Human protein_coding chr7:42972107 chr7:42972109 nonsynonymous SNV 0.416 0 23 hm5C_associated_SNPs_89183 0 0 1 0 1 MRPL32 chr7:42972115 5'GT 42972115 Upstream 7bp
chr7 31125054 31125054 1 + C T LUAD 31125051 + 31125031 31125071 41 GACAGCAACCACTGCTTCATCTCCACTGTGAGTGAGCCAAG GACAGCAACCACTGCTTCATCTCTACTGTGAGTGAGCCAAG < 41bp 0.789995925050408 0.57923028403032 0.83236027 0.06740108 prediction 0.421531282040176 Functional Loss - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31125051 chr7:31125054 synonymous SNV . 0 24 hm5C_associated_SNPs_89184 0 0 1 0 1 ADCYAP1R1 chr7:31125057 5'GT 31125057 Upstream 4bp
chr3 53220356 53220356 1 + G A LUSC 53220353 + 53220333 53220373 41 CTCATCTGCACCTTCCAGACCAAGGTGCCCGGGCCTCCTGC CTCATCTGCACCTTCCAGACCAAAGTGCCCGGGCCTCCTGC < 41bp 0.71076508147002 0.444284099668046 0.5463888 0.21872348 prediction 0.42153016294004 Functional Loss - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53220353 chr3:53220356 synonymous SNV . 0 24 hm5C_associated_SNPs_89186 0 0 0 0 1 PRKCD chr3:53220356 5'GT 53220356 Upstream 1bp
chr1 53308575 53308575 1 + C T UCEC 53308573 + 53308553 53308593 41 GCCATGGTTCATTTCTTGCACCCGGGCCACACGCCCCGGAA GCCATGGTTCATTTCTTGCACCTGGGCCACACGCCCCGGAA < 41bp 0.710762958191072 0.478140367372181 0.4778928 0.666906 prediction 0.421525916382143 Functional Loss - ZYG11A ENSG00000203995 CDS Human protein_coding chr1:53308573 chr1:53308575 nonsynonymous SNV 0.016 1 23 hm5C_associated_SNPs_89187 0 0 1 0 1 ZYG11A chr1:53308645 5'GT 53308645 Upstream 71bp
chr9 126794782 126794782 1 + G A LUSC 126794779 + 126794759 126794799 41 GGCGTGGACAAGTCGACAGACGCGGCGCTGCAGACAGGGAC GGCGTGGACAAGTCGACAGACGCAGCGCTGCAGACAGGGAC < 41bp 0.781907048127917 0.571144332874286 0.48491156 0.2507698 prediction 0.421525430507261 Functional Loss - LHX2 ENSG00000106689 CDS Human protein_coding chr9:126794779 chr9:126794782 synonymous SNV . 0 24 hm5C_associated_SNPs_89188 0 0 0 0 1 LHX2 chr9:126794699 3'AG 126794699 Downstream 84bp
chr11 114118002 114118002 1 + G A ESCA 114117999 + 114117979 114118019 41 AAGAGCCACAAACGCATCCACACGGGTGAGAAACCCTACGA AAGAGCCACAAACGCATCCACACAGGTGAGAAACCCTACGA < 41bp 0.792615476475257 0.581855472326984 0.6307155 0.6510307 prediction 0.421520008296546 Functional Loss - ZBTB16 ENSG00000109906 CDS Human protein_coding chr11:114117999 chr11:114118002 synonymous SNV . 0 24 hm5C_associated_SNPs_89189 0 0 0 0 2 ZBTB16 chr11:114117920 3'AG 114117920 Downstream 83bp
chr11 114118002 114118002 1 + G A ESCA 114117999 + 114117979 114118019 41 AAGAGCCACAAACGCATCCACACGGGTGAGAAACCCTACGA AAGAGCCACAAACGCATCCACACAGGTGAGAAACCCTACGA < 41bp 0.792615476475257 0.581855472326984 0.6307155 0.6510307 prediction 0.421520008296546 Functional Loss - ZBTB16 ENSG00000109906 CDS Human protein_coding chr11:114117999 chr11:114118002 synonymous SNV . 0 24 hm5C_associated_SNPs_89189 0 0 0 0 2 ZBTB16 chr11:114118087 5'GT 114118087 Upstream 86bp
chr10 131506192 131506192 1 + C T rs1803965 131506190 + 131506170 131506210 41 TCCCAGCCCCCGCTGCGGTTCTCGGAGGTCCGGAGCCCCTG TCCCAGCCCCCGCTGCGGTTCTTGGAGGTCCGGAGCCCCTG < 41bp 0.839368817839895 0.628610570973119 0.41931066 0.28640085 prediction 0.421516493733552 Functional Loss - MGMT ENSG00000170430 CDS Human protein_coding chr10:131506190 chr10:131506192 synonymous SNV . 0 23 hm5C_associated_SNPs_89191 0 0 1 0 1 MGMT chr10:131506159 3'AG 131506159 Downstream 34bp
chr12 72372794 72372794 1 + G T LUAD 72372792 + 72372772 72372812 41 GAGCCCACGAGACTTTCTGGCAGGACTGGCCTACAGAGTGT GAGCCCACGAGACTTTCTGGCATGACTGGCCTACAGAGTGT < 41bp 0.919622697069362 0.708866591110073 0.8623211 0.25475252 prediction 0.421512211918578 Functional Loss - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72372792 chr12:72372794 stopgain 0.956 1 23 hm5C_associated_SNPs_89192 0 0 0 0 2 TPH2 chr12:72372732 3'AG 72372732 Downstream 63bp
chr12 72372794 72372794 1 + G T LUAD 72372792 + 72372772 72372812 41 GAGCCCACGAGACTTTCTGGCAGGACTGGCCTACAGAGTGT GAGCCCACGAGACTTTCTGGCATGACTGGCCTACAGAGTGT < 41bp 0.919622697069362 0.708866591110073 0.8623211 0.25475252 prediction 0.421512211918578 Functional Loss - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72372792 chr12:72372794 stopgain 0.956 1 23 hm5C_associated_SNPs_89192 0 0 0 0 2 TPH2 chr12:72372867 5'GT 72372867 Upstream 74bp
chr2 97020046 97020046 1 + C T UCEC 97020043 + 97020023 97020063 41 CTGGGGGATGACTTTGATGCCAACGATGAACCTGACCACAC CTGGGGGATGACTTTGATGCCAATGATGAACCTGACCACAC < 41bp 0.736988429302376 0.526237668535657 0.08316755 0.21763375 prediction 0.421501521533439 Functional Loss - NCAPH ENSG00000121152 CDS Human protein_coding chr2:97020043 chr2:97020046 synonymous SNV . 0 24 hm5C_associated_SNPs_89195 0 0 1 0 1 NCAPH chr2:97020126 5'GT 97020126 Upstream 81bp
chr2 132110663 132110663 1 + G A rs559379192 132110660 + 132110640 132110680 41 AACCCAGGCGGTTCTCCCAACGCGATGTTTTTTTCCCAGCG AACCCAGGCGGTTCTCCCAACGCAATGTTTTTTTCCCAGCG < 41bp 0.738575516878782 0.527829635667703 0.21819383 0.1102314 prediction 0.421491762422158 Functional Loss - LOC440910;WTH3DI ENSG00000115762 CDS Human protein_coding chr2:132110660 chr2:132110663 nonsynonymous SNV 0.204 1 24 hm5C_associated_SNPs_89198 0 0 0 0 1 LOC440910;WTH3DI chr2:132110593 3'AG 132110593 Downstream 71bp
chr15 89843172 89843172 1 + G A SKCM 89843169 + 89843149 89843189 41 GTGCAACAGTTCTATCAGCCCAAGATTCAGCAGTTTCTCAG GTGCAACAGTTCTATCAGCCCAAAATTCAGCAGTTTCTCAG < 41bp 0.710743169269864 0.478979804565387 0.5696883 0.35105303 prediction 0.421486338539728 Functional Loss - FANCI ENSG00000140525 CDS Human protein_coding chr15:89843169 chr15:89843172 synonymous SNV . 0 24 hm5C_associated_SNPs_89202 0 0 1 0 1 FANCI chr15:89843197 5'GT 89843197 Upstream 26bp
chr6 127588024 127588024 1 + G A rs534154150 127588021 + 127588001 127588041 41 TTCCCGGCAGCTGCGGGCTCCGAGGCCAGAGAGAAAAGACT TTCCCGGCAGCTGCGGGCTCCGAAGCCAGAGAGAAAAGACT < 41bp 0.740366208739101 0.529626911352712 0.7739918 0.29360944 prediction 0.421478594772778 Functional Loss - RNF146 ENSG00000118518 UTR5 Human protein_coding chr6:127588021 chr6:127588024 . . 0 24 hm5C_associated_SNPs_89203 0 0 1 0 1 RNF146 chr6:127588070 5'GT 127588070 Upstream 47bp
chr11 70253677 70253677 1 + C T rs142633573 70253674 + 70253654 70253694 41 GGTGCCAAGACGGTGCAGGGCTCCGGGCACCAGGAGCATAT GGTGCCAAGACGGTGCAGGGCTCTGGGCACCAGGAGCATAT < 41bp 0.757395111665539 0.546659158349764 0.15586627 0.14571619 prediction 0.421471906631549 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70253674 chr11:70253677 synonymous SNV . 0 24 hm5C_associated_SNPs_89205 0 0 1 0 2 CTTN chr11:70253624 3'AG 70253624 Downstream 54bp
chr11 70253677 70253677 1 + C T rs142633573 70253674 + 70253654 70253694 41 GGTGCCAAGACGGTGCAGGGCTCCGGGCACCAGGAGCATAT GGTGCCAAGACGGTGCAGGGCTCTGGGCACCAGGAGCATAT < 41bp 0.757395111665539 0.546659158349764 0.15586627 0.14571619 prediction 0.421471906631549 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70253674 chr11:70253677 synonymous SNV . 0 24 hm5C_associated_SNPs_89205 0 0 1 0 2 CTTN chr11:70253697 5'GT 70253697 Upstream 21bp
chr2 45171770 45171770 1 + G A STAD 45171767 + 45171747 45171787 41 CTGGCCGAGCCCGGCTGCCCCACGCACGGCTCGGCAGAGTC CTGGCCGAGCCCGGCTGCCCCACACACGGCTCGGCAGAGTC < 41bp 0.793600056111114 0.582867219116759 0.10454491 0.027784705 prediction 0.421465673988711 Functional Loss - SIX3 ENSG00000138083 CDS Human protein_coding chr2:45171767 chr2:45171770 synonymous SNV . 0 24 hm5C_associated_SNPs_89206 0 0 0 0 1 SIX3 chr2:45171707 3'AG 45171707 Downstream 64bp
chr2 202151199 202151199 1 + C T HNSC 202151197 + 202151177 202151217 41 TTCAGAGGCGATGATATTCTCACCATCCTGACTGAAGTGAA TTCAGAGGCGATGATATTCTCATCATCCTGACTGAAGTGAA < 41bp 0.710730999678998 0.469031477769692 0.18412435 0.16171542 prediction 0.421461999357996 Functional Loss - CASP8 ENSG00000064012 CDS Human protein_coding chr2:202151197 chr2:202151199 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_89207 0 0 1 0 1 CASP8 chr2:202151182 3'AG 202151182 Downstream 18bp
chr19 50154181 50154181 1 + A C LIHC 50154180 + 50154160 50154200 41 GCCCGTCACCTCACCTTGGGCACGGGAGACGGGGGCCCTGC GCCCGTCACCTCACCTTGGGCCCGGGAGACGGGGGCCCTGC < 41bp 0.832323751778046 0.621594648177203 0.7218919 0.36515713 prediction 0.421458207201687 Functional Loss - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50154180 chr19:50154181 nonsynonymous SNV 0.985 2 22 hm5C_associated_SNPs_89209 0 0 1 0 1 SCAF1 chr19:50154125 3'AG 50154125 Downstream 57bp
chr12 132393334 132393334 1 + C T SKCM 132393331 + 132393311 132393351 41 TCCAACCCCGCCGGCCGCCGCGCCAACCCCAACAGCATCCG TCCAACCCCGCCGGCCGCCGCGCTAACCCCAACAGCATCCG < 41bp 0.710727092326256 0.49812011119487 0.22513428 0.24264205 prediction 0.421454184652511 Functional Loss - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132393331 chr12:132393334 synonymous SNV . 0 24 hm5C_associated_SNPs_89212 0 0 1 0 1 ULK1 chr12:132393362 5'GT 132393362 Upstream 29bp
chrX 48339684 48339684 1 + A T LUAD 48339680 + 48339660 48339700 41 GTCTGTCCTGCCCACAGGCTCTGAACATTGCTACACATGTC GTCTGTCCTGCCCACAGGCTCTGATCATTGCTACACATGTC < 41bp 0.710723148133086 0.367213753727513 0.029333413 0.08325127 prediction 0.421446296266171 Functional Loss - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48339680 chrX:48339684 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_89215 0 0 1 0 2 FTSJ1 chrX:48339677 3'AG 48339677 Downstream 8bp
chrX 48339684 48339684 1 + A T LUAD 48339680 + 48339660 48339700 41 GTCTGTCCTGCCCACAGGCTCTGAACATTGCTACACATGTC GTCTGTCCTGCCCACAGGCTCTGATCATTGCTACACATGTC < 41bp 0.710723148133086 0.367213753727513 0.029333413 0.08325127 prediction 0.421446296266171 Functional Loss - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48339680 chrX:48339684 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_89215 0 0 1 0 2 FTSJ1 chrX:48339730 5'GT 48339730 Upstream 47bp
chr1 210012310 210012310 1 + C T rs530246971 210012307 + 210012287 210012327 41 TTGCGGGTGGTGCAGCTCTTCATCAGCCTCCTCGAGGGTGA TTGCGGGTGGTGCAGCTCTTCATTAGCCTCCTCGAGGGTGA < 41bp 0.739569405339396 0.528850941590857 0.27118605 0.13844365 prediction 0.421436927497079 Functional Loss - DIEXF ENSG00000117597 CDS Human protein_coding chr1:210012307 chr1:210012310 synonymous SNV . 0 24 hm5C_associated_SNPs_89217 0 0 1 0 1 DIEXF chr1:210012254 3'AG 210012254 Downstream 57bp
chr2 63223825 63223825 1 + A T OV 63223821 + 63223801 63223841 41 GTATGTAGTAGGAGAATTGGCAGCACTAGAGAATGAGCAAA GTATGTAGTAGGAGAATTGGCAGCTCTAGAGAATGAGCAAA < 41bp 0.710718270397921 0.39178195424767 0.1883634 0.20217866 prediction 0.421436540795842 Functional Loss - EHBP1 ENSG00000115504 CDS Human protein_coding chr2:63223821 chr2:63223825 synonymous SNV . 0 25 hm5C_associated_SNPs_89218 0 0 1 0 2 EHBP1 chr2:63223778 3'AG 63223778 Downstream 48bp
chr2 63223825 63223825 1 + A T OV 63223821 + 63223801 63223841 41 GTATGTAGTAGGAGAATTGGCAGCACTAGAGAATGAGCAAA GTATGTAGTAGGAGAATTGGCAGCTCTAGAGAATGAGCAAA < 41bp 0.710718270397921 0.39178195424767 0.1883634 0.20217866 prediction 0.421436540795842 Functional Loss - EHBP1 ENSG00000115504 CDS Human protein_coding chr2:63223821 chr2:63223825 synonymous SNV . 0 25 hm5C_associated_SNPs_89218 0 0 1 0 2 EHBP1 chr2:63223901 5'GT 63223901 Upstream 77bp
chr1 16353090 16353090 1 + G A BLCA 16353087 + 16353067 16353107 41 TACCTGGGCCGTGTGCGCACCACGACCATCGGGGAGCCTGA TACCTGGGCCGTGTGCGCACCACAACCATCGGGGAGCCTGA < 41bp 0.710713735447204 0.460316498141183 0.11486292 0.08616239 prediction 0.421427470894408 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16353087 chr1:16353090 synonymous SNV . 0 24 hm5C_associated_SNPs_89219 0 0 0 0 2 CLCNKA chr1:16353031 3'AG 16353031 Downstream 60bp
chr1 16353090 16353090 1 + G A BLCA 16353087 + 16353067 16353107 41 TACCTGGGCCGTGTGCGCACCACGACCATCGGGGAGCCTGA TACCTGGGCCGTGTGCGCACCACAACCATCGGGGAGCCTGA < 41bp 0.710713735447204 0.460316498141183 0.11486292 0.08616239 prediction 0.421427470894408 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16353087 chr1:16353090 synonymous SNV . 0 24 hm5C_associated_SNPs_89219 0 0 0 0 2 CLCNKA chr1:16353108 5'GT 16353108 Upstream 19bp
chr3 147130454 147130454 1 + C T BLCA 147130451 + 147130431 147130471 41 CCTACACGCATCCCAGTTCGCTGCGCAAACACATGAAGGTA CCTACACGCATCCCAGTTCGCTGTGCAAACACATGAAGGTA < 41bp 0.712502615000469 0.501788879699894 0.20633054 0.19240806 prediction 0.421427470601151 Functional Loss - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147130451 chr3:147130454 nonsynonymous SNV 0.975 3 24 hm5C_associated_SNPs_89220 0 0 0 0 1 ZIC1 chr3:147130468 5'GT 147130468 Upstream 15bp
chr8 55055338 55055338 1 + G A KIRC 55055335 + 55055315 55055355 41 TACTACAGCCTTCTATGATCCAAGAAGTCTGGGTAAGTTTG TACTACAGCCTTCTATGATCCAAAAAGTCTGGGTAAGTTTG < 41bp 0.710711790163239 0.47445856042351 0.63423 0.120194465 prediction 0.421423580326479 Functional Loss - MRPL15 ENSG00000137547 CDS Human protein_coding chr8:55055335 chr8:55055338 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_89222 0 0 1 0 1 MRPL15 chr8:55055346 5'GT 55055346 Upstream 9bp
chr22 46725290 46725290 1 + G T CESC 46725287 + 46725267 46725307 41 GATATCAAACTGGAACCACTCGCGGTCACTCCAGATGCTGC GATATCAAACTGGAACCACTCGCTGTCACTCCAGATGCTGC < 41bp 0.710711174305611 0.316363404650424 0.41042286 0.019043803 prediction 0.421422348611222 Functional Loss - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46725287 chr22:46725290 synonymous SNV . 0 24 hm5C_associated_SNPs_89225 0 0 1 2 1 GTSE1 chr22:46725255 3'AG 46725255 Downstream 36bp
chr12 113821937 113821937 1 + A T STAD 113821933 + 113821913 113821953 41 ACACTGGAGACCACCATTGGCAACAAGAACCCAGCCCTGTG ACACTGGAGACCACCATTGGCAACTAGAACCCAGCCCTGTG < 41bp 0.710707411679052 0.36845229990192 0.1391826 0.1299985 prediction 0.421414823358105 Functional Loss - PLBD2 ENSG00000151176 CDS Human protein_coding chr12:113821933 chr12:113821937 stopgain 0.999 0 25 hm5C_associated_SNPs_89229 0 0 0 0 1 PLBD2 chr12:113821910 3'AG 113821910 Downstream 28bp
chr13 113803243 113803243 1 + G A UCEC 113803240 + 113803220 113803260 41 TCTGTCCCAGGGGACCGGAACACGGAGCAGGAGGAGGGCGG TCTGTCCCAGGGGACCGGAACACAGAGCAGGAGGAGGGCGG < 41bp 0.808097334792772 0.597397190377442 0.610177 0.1758278 prediction 0.421400288830658 Functional Loss - F10 ENSG00000126218 CDS Human protein_coding chr13:113803240 chr13:113803243 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_89232 0 0 1 0 1 F10 chr13:113803230 3'AG 113803230 Downstream 14bp
chr5 7817047 7817047 1 + G T UCEC 7817045 + 7817025 7817065 41 CTTTTGCCCTGGTAGGGAAGCTGGATGCCATCAACAAGCAC CTTTTGCCCTGGTAGGGAAGCTTGATGCCATCAACAAGCAC < 41bp 0.710698234635232 0.375176495134673 0.25426662 0.21515393 prediction 0.421396469270463 Functional Loss - ADCY2 ENSG00000078295 CDS Human protein_coding chr5:7817045 chr5:7817047 synonymous SNV . 0 23 hm5C_associated_SNPs_89233 0 0 0 0 2 ADCY2 chr5:7816979 3'AG 7816979 Downstream 69bp
chr5 7817047 7817047 1 + G T UCEC 7817045 + 7817025 7817065 41 CTTTTGCCCTGGTAGGGAAGCTGGATGCCATCAACAAGCAC CTTTTGCCCTGGTAGGGAAGCTTGATGCCATCAACAAGCAC < 41bp 0.710698234635232 0.375176495134673 0.25426662 0.21515393 prediction 0.421396469270463 Functional Loss - ADCY2 ENSG00000078295 CDS Human protein_coding chr5:7817045 chr5:7817047 synonymous SNV . 0 23 hm5C_associated_SNPs_89233 0 0 0 0 2 ADCY2 chr5:7817093 5'GT 7817093 Upstream 47bp
chr7 128484771 128484771 1 + C T SKCM 128484768 + 128484748 128484788 41 GTAGGCACCCCCGCGCCATTCTCCATCGACACCAAGGGGGC GTAGGCACCCCCGCGCCATTCTCTATCGACACCAAGGGGGC < 41bp 0.751152831303871 0.540455032001726 0.96153045 0.93476206 prediction 0.42139559860429 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128484768 chr7:128484771 synonymous SNV . 0 24 hm5C_associated_SNPs_89234 0 0 1 0 1 FLNC chr7:128484712 3'AG 128484712 Downstream 60bp
chr6 131897807 131897807 1 + G A BRCA 131897804 + 131897784 131897824 41 TTATTTTTTAATTGTTCAGCCACGAGGAGGGGTGGAAGAAG TTATTTTTTAATTGTTCAGCCACAAGGAGGGGTGGAAGAAG < 41bp 0.710697179053949 0.480838142134982 0.29477972 0.28857076 prediction 0.421394358107897 Functional Loss - ARG1 ENSG00000118520 CDS Human protein_coding chr6:131897804 chr6:131897807 nonsynonymous SNV 0.991 3 24 hm5C_associated_SNPs_89235 0 0 0 0 2 ARG1 chr6:131897803 3'AG 131897803 Downstream 5bp
chr6 131897807 131897807 1 + G A BRCA 131897804 + 131897784 131897824 41 TTATTTTTTAATTGTTCAGCCACGAGGAGGGGTGGAAGAAG TTATTTTTTAATTGTTCAGCCACAAGGAGGGGTGGAAGAAG < 41bp 0.710697179053949 0.480838142134982 0.29477972 0.28857076 prediction 0.421394358107897 Functional Loss - ARG1 ENSG00000118520 CDS Human protein_coding chr6:131897804 chr6:131897807 nonsynonymous SNV 0.991 3 24 hm5C_associated_SNPs_89235 0 0 0 0 2 ARG1 chr6:131897875 5'GT 131897875 Upstream 69bp
chr11 63663075 63663075 1 + G T UCEC 63663072 + 63663052 63663092 41 GTAGCTGTGAAGATCATTGACAAGACTCAACTGAACTCCTC GTAGCTGTGAAGATCATTGACAATACTCAACTGAACTCCTC < 41bp 0.710688474851218 0.310855064867922 0.79533505 0.35216153 prediction 0.421376949702437 Functional Loss - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63663072 chr11:63663075 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_89243 0 0 1 0 2 MARK2 chr11:63663052 3'AG 63663052 Downstream 24bp
chr11 63663075 63663075 1 + G T UCEC 63663072 + 63663052 63663092 41 GTAGCTGTGAAGATCATTGACAAGACTCAACTGAACTCCTC GTAGCTGTGAAGATCATTGACAATACTCAACTGAACTCCTC < 41bp 0.710688474851218 0.310855064867922 0.79533505 0.35216153 prediction 0.421376949702437 Functional Loss - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63663072 chr11:63663075 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_89243 0 0 1 0 2 MARK2 chr11:63663105 5'GT 63663105 Upstream 31bp
chr14 68046542 68046542 1 + G A rs114429668 68046539 + 68046519 68046559 41 CACTCTGGCTTTGCCCTCTTCACGGACGATCCCTCGGGCAG CACTCTGGCTTTGCCCTCTTCACAGACGATCCCTCGGGCAG < 41bp 0.814353371245945 0.603664920784965 0.80433035 0.32214832 prediction 0.421376900921959 Functional Loss - PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68046539 chr14:68046542 synonymous SNV . 0 24 hm5C_associated_SNPs_89244 0 0 1 0 1 PLEKHH1 chr14:68046593 5'GT 68046593 Upstream 52bp
chr11 1862412 1862412 1 + A C UCEC 1862411 + 1862391 1862431 41 ACCTGAGGGCCAACCTGAAGCAGGTCAAGAAGGAGGACACA ACCTGAGGGCCAACCTGAAGCCGGTCAAGAAGGAGGACACA < 41bp 0.710684444822651 0.44352728420915 0.8084923 0.28302136 prediction 0.421368889645302 Functional Loss - TNNI2 ENSG00000130598 CDS Human protein_coding chr11:1862411 chr11:1862412 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_89248 0 0 0 0 1 TNNI2 chr11:1862437 5'GT 1862437 Upstream 26bp
chr1 171292287 171292287 1 + G T LUAD 171292284 + 171292264 171292304 41 AAAAATTTTGGGACTATCTCCAAGAATTTGCTGAGCACTTT AAAAATTTTGGGACTATCTCCAATAATTTGCTGAGCACTTT < 41bp 0.710683969476037 0.332172314033409 0.11973858 0.03455785 prediction 0.421367938952073 Functional Loss - FMO4 ENSG00000076258 CDS Human protein_coding chr1:171292284 chr1:171292287 stopgain 0.997 0 24 hm5C_associated_SNPs_89249 0 0 0 0 1 FMO4 chr1:171292331 5'GT 171292331 Upstream 45bp
chr20 61943325 61943325 1 + G A rs73329169 61943322 + 61943302 61943342 41 AGACGTGAGCCACGACGCGGCACGAGTGTTCTGGGAGGGTG AGACGTGAGCCACGACGCGGCACAAGTGTTCTGGGAGGGTG < 41bp 0.80674362848591 0.596060938359621 0.32351413 0.3460775 prediction 0.421365380252577 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61943322 chr20:61943325 nonsynonymous SNV 0.014 1 24 hm5C_associated_SNPs_89250 0 0 0 0 2 COL20A1 chr20:61943268 3'AG 61943268 Downstream 58bp
chr20 61943325 61943325 1 + G A rs73329169 61943322 + 61943302 61943342 41 AGACGTGAGCCACGACGCGGCACGAGTGTTCTGGGAGGGTG AGACGTGAGCCACGACGCGGCACAAGTGTTCTGGGAGGGTG < 41bp 0.80674362848591 0.596060938359621 0.32351413 0.3460775 prediction 0.421365380252577 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61943322 chr20:61943325 nonsynonymous SNV 0.014 1 24 hm5C_associated_SNPs_89250 0 0 0 0 2 COL20A1 chr20:61943407 5'GT 61943407 Upstream 83bp
chr2 1507808 1507808 1 + C T STAD 1507805 + 1507785 1507825 41 AAAGGCGGCTTCCAGTGTCTCTGCGCGGACCCCTACGAGTT AAAGGCGGCTTCCAGTGTCTCTGTGCGGACCCCTACGAGTT < 41bp 0.716241928388927 0.505560182855056 0.27048704 0.17694974 prediction 0.421363491067742 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1507805 chr2:1507808 synonymous SNV . 0 24 hm5C_associated_SNPs_89251 0 0 0 0 2 TPO chr2:1507720 3'AG 1507720 Downstream 89bp
chr2 1507808 1507808 1 + C T STAD 1507805 + 1507785 1507825 41 AAAGGCGGCTTCCAGTGTCTCTGCGCGGACCCCTACGAGTT AAAGGCGGCTTCCAGTGTCTCTGTGCGGACCCCTACGAGTT < 41bp 0.716241928388927 0.505560182855056 0.27048704 0.17694974 prediction 0.421363491067742 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1507805 chr2:1507808 synonymous SNV . 0 24 hm5C_associated_SNPs_89251 0 0 0 0 2 TPO chr2:1507851 5'GT 1507851 Upstream 44bp
chr16 1716165 1716165 1 + G A ESCA 1716162 + 1716142 1716182 41 AAGGTCCTTCCACCCCAGGCCACGAGTCACCTGGCCAGTAA AAGGTCCTTCCACCCCAGGCCACAAGTCACCTGGCCAGTAA < 41bp 0.710679146071199 0.461283777488845 0.4012068 0.35561147 prediction 0.421358292142398 Functional Loss - CRAMP1 ENSG00000007545 CDS Human protein_coding chr16:1716162 chr16:1716165 synonymous SNV . 0 24 hm5C_associated_SNPs_89252 0 0 1 0 2 CRAMP1 chr16:1716074 3'AG 1716074 Downstream 92bp
chr16 1716165 1716165 1 + G A ESCA 1716162 + 1716142 1716182 41 AAGGTCCTTCCACCCCAGGCCACGAGTCACCTGGCCAGTAA AAGGTCCTTCCACCCCAGGCCACAAGTCACCTGGCCAGTAA < 41bp 0.710679146071199 0.461283777488845 0.4012068 0.35561147 prediction 0.421358292142398 Functional Loss - CRAMP1 ENSG00000007545 CDS Human protein_coding chr16:1716162 chr16:1716165 synonymous SNV . 0 24 hm5C_associated_SNPs_89252 0 0 1 0 2 CRAMP1 chr16:1716178 5'GT 1716178 Upstream 14bp
chr15 57574736 57574736 1 + G A LUAD 57574733 + 57574713 57574753 41 AGAGCCGCCAACCACACTGCCAGGAACCCATCCTGGGCTTA AGAGCCGCCAACCACACTGCCAGAAACCCATCCTGGGCTTA < 41bp 0.720280509248091 0.509602114209539 0.82437325 0.52633196 prediction 0.421356790077104 Functional Loss - TCF12 ENSG00000140262 CDS Human protein_coding chr15:57574733 chr15:57574736 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_89253 0 0 1 0 1 TCF12 chr15:57574643 3'AG 57574643 Downstream 94bp
chrX 7811290 7811290 1 + G T UCEC 7811288 + 7811268 7811308 41 GGGACCTCCGGCCAAGGCCACGGAGGCAGGAAAGAGGAAGT GGGACCTCCGGCCAAGGCCACGTAGGCAGGAAAGAGGAAGT < 41bp 0.710678286036022 0.344214036627282 0.8620833 0.19393381 prediction 0.421356572072045 Functional Loss - VCX ENSG00000182583 CDS Human protein_coding chrX:7811288 chrX:7811290 stopgain 0.001 0 23 hm5C_associated_SNPs_89254 0 0 0 0 1 VCX chrX:7811346 5'GT 7811346 Upstream 57bp
chr16 85952310 85952310 1 + G A OV 85952307 + 85952287 85952327 41 TCAAGCGGCTGTGCCAGGGCCGCGTGTTCTGCAGCGGCAAC TCAAGCGGCTGTGCCAGGGCCGCATGTTCTGCAGCGGCAAC < 41bp 0.80861820281807 0.59794125256904 0.28144667 0.09106806 prediction 0.421353900498059 Functional Loss - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85952307 chr16:85952310 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_89255 0 0 0 0 1 IRF8 chr16:85952409 5'GT 85952409 Upstream 100bp
chr19 1063775 1063775 1 + G T BRCA 1063772 + 1063752 1063792 41 TCCCCAGGACGAGCCGACCACAGGCATGGACCCCAGCGCGC TCCCCAGGACGAGCCGACCACAGTCATGGACCCCAGCGCGC < 41bp 0.710675256915334 0.318453721145695 0.6250936 0.17346895 prediction 0.421350513830667 Functional Loss - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1063772 chr19:1063775 nonsynonymous SNV 0.774 4 24 hm5C_associated_SNPs_89256 0 0 0 0 2 ABCA7 chr19:1063759 3'AG 1063759 Downstream 17bp
chr19 1063775 1063775 1 + G T BRCA 1063772 + 1063752 1063792 41 TCCCCAGGACGAGCCGACCACAGGCATGGACCCCAGCGCGC TCCCCAGGACGAGCCGACCACAGTCATGGACCCCAGCGCGC < 41bp 0.710675256915334 0.318453721145695 0.6250936 0.17346895 prediction 0.421350513830667 Functional Loss - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1063772 chr19:1063775 nonsynonymous SNV 0.774 4 24 hm5C_associated_SNPs_89256 0 0 0 0 2 ABCA7 chr19:1063862 5'GT 1063862 Upstream 88bp
chr22 44372002 44372002 1 + C T CESC 44372000 + 44371980 44372020 41 TGGCGAGAACTGGGCTGCCTCTCAAGGACGGCGTCATTTGC TGGCGAGAACTGGGCTGCCTCTTAAGGACGGCGTCATTTGC < 41bp 0.861758375906178 0.651085098281331 0.3620817 0.27878273 prediction 0.421346555249693 Functional Loss - SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44372000 chr22:44372002 nonsynonymous SNV 0.834 2 23 hm5C_associated_SNPs_89259 0 0 1 0 2 SAMM50 chr22:44371935 3'AG 44371935 Downstream 68bp
chr22 44372002 44372002 1 + C T CESC 44372000 + 44371980 44372020 41 TGGCGAGAACTGGGCTGCCTCTCAAGGACGGCGTCATTTGC TGGCGAGAACTGGGCTGCCTCTTAAGGACGGCGTCATTTGC < 41bp 0.861758375906178 0.651085098281331 0.3620817 0.27878273 prediction 0.421346555249693 Functional Loss - SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44372000 chr22:44372002 nonsynonymous SNV 0.834 2 23 hm5C_associated_SNPs_89259 0 0 1 0 2 SAMM50 chr22:44372063 5'GT 44372063 Upstream 62bp
chr6 168442803 168442803 1 + C T UCEC 168442801 + 168442781 168442821 41 AGGTGCAGGCTCGACTACAGCTCGTGGACTCGGCCGGCAGC AGGTGCAGGCTCGACTACAGCTTGTGGACTCGGCCGGCAGC < 41bp 0.850397111564304 0.63973105348397 0.17638814 0.109577894 prediction 0.421332116160668 Functional Loss - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168442801 chr6:168442803 synonymous SNV . 0 23 hm5C_associated_SNPs_89266 0 0 0 0 1 KIF25 chr6:168442831 5'GT 168442831 Upstream 29bp
chr11 47600884 47600884 1 + G A BLCA 47600881 + 47600861 47600901 41 GGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATGTGCGGG GGAGAGCGCCGGGGCCGACACGCACCGTGAGTATGTGCGGG < 41bp 0.823034449271084 0.61236958918004 0.15431264 0.05063802 prediction 0.42132972018209 Functional Loss - NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600881 chr11:47600884 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_89268 0 0 1 0 2 NDUFS3 chr11:47600821 3'AG 47600821 Downstream 64bp
chr11 47600884 47600884 1 + G A BLCA 47600881 + 47600861 47600901 41 GGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATGTGCGGG GGAGAGCGCCGGGGCCGACACGCACCGTGAGTATGTGCGGG < 41bp 0.823034449271084 0.61236958918004 0.15431264 0.05063802 prediction 0.42132972018209 Functional Loss - NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600881 chr11:47600884 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_89268 0 0 1 0 2 NDUFS3 chr11:47600886 5'GT 47600886 Upstream 3bp
chr16 90161003 90161003 1 + C T CESC 90161001 + 90160981 90161021 41 GGCACCATGGACTCCGTGCGCTCGGGGCCCTTCGGGCAGGT GGCACCATGGACTCCGTGCGCTTGGGGCCCTTCGGGCAGGT < 41bp 0.804355930721805 0.593694746982909 0.34247583 0.3418539 prediction 0.421322367477792 Functional Loss - PRDM7;FAM157B ENSG00000261812 CDS Human transcribed_unprocessed_pseudogene chr16:90161001 chr16:90161003 unknown . 0 23 hm5C_associated_SNPs_89269 0 0 0 0 1 PRDM7;FAM157B chr16:90160937 3'AG 90160937 Downstream 67bp
chr11 65416779 65416779 1 + C T UCEC 65416776 + 65416756 65416796 41 TGTCGCTGCAGGAGCCTAGCCGGCGGGGGGCCCCAGATCCT TGTCGCTGCAGGAGCCTAGCCGGTGGGGGGCCCCAGATCCT < 41bp 0.728177230927447 0.51751707030018 0.8993103 0.776238 prediction 0.421320321254534 Functional Loss - SIPA1 ENSG00000213445 CDS Human protein_coding chr11:65416776 chr11:65416779 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_89271 0 0 1 0 1 SIPA1 chr11:65416733 3'AG 65416733 Downstream 47bp
chr22 24911249 24911249 1 + C T rs74883165 24911246 + 24911226 24911266 41 AGGATCGCGGTGAACATTTGCTACGGGCGGCACCACCCCCT AGGATCGCGGTGAACATTTGCTATGGGCGGCACCACCCCCT < 41bp 0.732326689287292 0.521668132544329 0.24166325 0.2408194 prediction 0.421317113485927 Functional Loss - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24911246 chr22:24911249 synonymous SNV . 0 24 hm5C_associated_SNPs_89272 1 0 0 0 2 UPB1 chr22:24911169 3'AG 24911169 Downstream 81bp
chr22 24911249 24911249 1 + C T rs74883165 24911246 + 24911226 24911266 41 AGGATCGCGGTGAACATTTGCTACGGGCGGCACCACCCCCT AGGATCGCGGTGAACATTTGCTATGGGCGGCACCACCCCCT < 41bp 0.732326689287292 0.521668132544329 0.24166325 0.2408194 prediction 0.421317113485927 Functional Loss - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24911246 chr22:24911249 synonymous SNV . 0 24 hm5C_associated_SNPs_89272 1 0 0 0 2 UPB1 chr22:24911338 5'GT 24911338 Upstream 90bp
chrX 48116745 48116745 1 + G T STAD 48116742 + 48116722 48116762 41 AAAGCATCAGAGAAGAGAAGCAAGGTGACGTGACCTGGAGG AAAGCATCAGAGAAGAGAAGCAATGTGACGTGACCTGGAGG < 41bp 0.710656943163338 0.448610602897509 0.87782323 0.506628 prediction 0.421313886326676 Functional Loss - SSX1 ENSG00000126752 CDS Human protein_coding chrX:48116742 chrX:48116745 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_89277 0 0 0 0 2 SSX1 chrX:48116657 3'AG 48116657 Downstream 89bp
chrX 48116745 48116745 1 + G T STAD 48116742 + 48116722 48116762 41 AAAGCATCAGAGAAGAGAAGCAAGGTGACGTGACCTGGAGG AAAGCATCAGAGAAGAGAAGCAATGTGACGTGACCTGGAGG < 41bp 0.710656943163338 0.448610602897509 0.87782323 0.506628 prediction 0.421313886326676 Functional Loss - SSX1 ENSG00000126752 CDS Human protein_coding chrX:48116742 chrX:48116745 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_89277 0 0 0 0 2 SSX1 chrX:48116745 5'GT 48116745 Upstream 1bp
chr5 169127118 169127118 1 + G T LUAD 169127116 + 169127096 169127136 41 CCACCGTGGTGGCCAGGAAGCTGGGATTCCCAGAGATCATC CCACCGTGGTGGCCAGGAAGCTTGGATTCCCAGAGATCATC < 41bp 0.710652523116634 0.389202364827478 0.7667419 0.13829675 prediction 0.421305046233268 Functional Loss - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169127116 chr5:169127118 synonymous SNV . 0 23 hm5C_associated_SNPs_89280 0 0 1 2 1 DOCK2 chr5:169127143 5'GT 169127143 Upstream 26bp
chr14 71134364 71134364 1 + T C SKCM 71134363 + 71134343 71134383 41 TTGAAGAAGGAAGGGGAGAACTTCAAGGCCCTTTACCGGTC TTGAAGAAGGAAGGGGAGAACCTCAAGGCCCTTTACCGGTC < 41bp 0.71065001181119 0.428393282328881 0.58918864 0.24019387 prediction 0.421300023622381 Functional Loss - TTC9 ENSG00000133985 CDS Human protein_coding chr14:71134363 chr14:71134364 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_89281 0 0 0 0 2 TTC9 chr14:71134281 3'AG 71134281 Downstream 84bp
chr14 71134364 71134364 1 + T C SKCM 71134363 + 71134343 71134383 41 TTGAAGAAGGAAGGGGAGAACTTCAAGGCCCTTTACCGGTC TTGAAGAAGGAAGGGGAGAACCTCAAGGCCCTTTACCGGTC < 41bp 0.71065001181119 0.428393282328881 0.58918864 0.24019387 prediction 0.421300023622381 Functional Loss - TTC9 ENSG00000133985 CDS Human protein_coding chr14:71134363 chr14:71134364 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_89281 0 0 0 0 2 TTC9 chr14:71134463 5'GT 71134463 Upstream 100bp
chr20 31873972 31873972 1 + C T LUAD 31873970 + 31873950 31873990 41 GTCCCACTGCAGTTCTCATCCTCGGCCCAAAAGTCATCAAA GTCCCACTGCAGTTCTCATCCTTGGCCCAAAAGTCATCAAA < 41bp 0.710648302650627 0.439992194922218 0.09627482 0.050861508 prediction 0.421296605301253 Functional Loss - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31873970 chr20:31873972 synonymous SNV . 0 23 hm5C_associated_SNPs_89284 0 0 0 0 1 BPIFB1 chr20:31873994 5'GT 31873994 Upstream 23bp
chr17 73269657 73269657 1 - C T UCEC 73269660 - 73269640 73269680 41 TGCTGCAAAAGGAAGGCGCCCTGGGCTTCTTCAAGGGCCTG TGCTGCAAAAGGAAGGCGCCCTGAGCTTCTTCAAGGGCCTG < 41bp 0.798555180924356 0.587912522377124 0.22152737 0.13470012 prediction 0.421285317094465 Functional Loss - SLC25A19 ENSG00000125454 CDS Human protein_coding chr17:73269660 chr17:73269657 nonsynonymous SNV 0.709 5 24 hm5C_associated_SNPs_89287 0 0 1 0 1 SLC25A19 chr17:73269720 3'AG 73269720 Downstream 64bp
chr15 67636436 67636436 1 + C T READ 67636434 + 67636414 67636454 41 GATAGAACGAGGGCTGATTCCACCAACAGCAAGGATTACCT GATAGAACGAGGGCTGATTCCATCAACAGCAAGGATTACCT < 41bp 0.710640101405178 0.406521981302688 0.2751589 0.060142457 prediction 0.421280202810355 Functional Loss - IQCH ENSG00000103599 CDS Human protein_coding chr15:67636434 chr15:67636436 nonsynonymous SNV 0.946 1 23 hm5C_associated_SNPs_89288 0 0 1 0 2 IQCH chr15:67636401 3'AG 67636401 Downstream 36bp
chr15 67636436 67636436 1 + C T READ 67636434 + 67636414 67636454 41 GATAGAACGAGGGCTGATTCCACCAACAGCAAGGATTACCT GATAGAACGAGGGCTGATTCCATCAACAGCAAGGATTACCT < 41bp 0.710640101405178 0.406521981302688 0.2751589 0.060142457 prediction 0.421280202810355 Functional Loss - IQCH ENSG00000103599 CDS Human protein_coding chr15:67636434 chr15:67636436 nonsynonymous SNV 0.946 1 23 hm5C_associated_SNPs_89288 0 0 1 0 2 IQCH chr15:67636529 5'GT 67636529 Upstream 94bp
chr15 91029336 91029336 1 + C T UCEC 91029333 + 91029313 91029353 41 CACGAACTGCTGGACGACCTCGGCGAGGTGCCCACCATCGA CACGAACTGCTGGACGACCTCGGTGAGGTGCCCACCATCGA < 41bp 0.746993666745158 0.536354830043107 0.8589037 0.6811978 prediction 0.421277673404101 Functional Loss - IQGAP1 ENSG00000140575 CDS Human protein_coding chr15:91029333 chr15:91029336 synonymous SNV . 0 24 hm5C_associated_SNPs_89289 0 0 1 0 2 IQGAP1 chr15:91029262 3'AG 91029262 Downstream 75bp
chr15 91029336 91029336 1 + C T UCEC 91029333 + 91029313 91029353 41 CACGAACTGCTGGACGACCTCGGCGAGGTGCCCACCATCGA CACGAACTGCTGGACGACCTCGGTGAGGTGCCCACCATCGA < 41bp 0.746993666745158 0.536354830043107 0.8589037 0.6811978 prediction 0.421277673404101 Functional Loss - IQGAP1 ENSG00000140575 CDS Human protein_coding chr15:91029333 chr15:91029336 synonymous SNV . 0 24 hm5C_associated_SNPs_89289 0 0 1 0 2 IQGAP1 chr15:91029364 5'GT 91029364 Upstream 29bp
chr1 26524887 26524887 1 + G A UCEC 26524884 + 26524864 26524904 41 ATCTGCATCACCCAGGACGGCTGGGTGGACATCTACAGTGA ATCTGCATCACCCAGGACGGCTGAGTGGACATCTACAGTGA < 41bp 0.809492084499593 0.598856300552239 0.18660903 0.055432916 prediction 0.421271567894708 Functional Loss - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26524884 chr1:26524887 stopgain 0.998 1 24 hm5C_associated_SNPs_89290 0 0 0 1 2 CATSPER4 chr1:26524825 3'AG 26524825 Downstream 63bp
chr1 26524887 26524887 1 + G A UCEC 26524884 + 26524864 26524904 41 ATCTGCATCACCCAGGACGGCTGGGTGGACATCTACAGTGA ATCTGCATCACCCAGGACGGCTGAGTGGACATCTACAGTGA < 41bp 0.809492084499593 0.598856300552239 0.18660903 0.055432916 prediction 0.421271567894708 Functional Loss - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26524884 chr1:26524887 stopgain 0.998 1 24 hm5C_associated_SNPs_89290 0 0 0 1 2 CATSPER4 chr1:26524910 5'GT 26524910 Upstream 24bp
chr17 14205298 14205298 1 + G T UCEC 14205295 + 14205275 14205315 41 AGGGCGGCACGCGGGCGCTGCTGGAGTTTCTGCGCGTGCAC AGGGCGGCACGCGGGCGCTGCTGTAGTTTCTGCGCGTGCAC < 41bp 0.928354424276093 0.71772117593156 0.86773074 0.6739027 prediction 0.421266496689065 Functional Loss - HS3ST3B1 ENSG00000125430 CDS Human protein_coding chr17:14205295 chr17:14205298 stopgain 1.000 0 24 hm5C_associated_SNPs_89291 0 0 1 0 1 HS3ST3B1 chr17:14205389 5'GT 14205389 Upstream 92bp
chr2 238436105 238436105 1 + C T rs75980625 238436103 + 238436083 238436123 41 ATGAGGAAAGCATCCGGGCTCACGTGATGGCCTCCCACCAT ATGAGGAAAGCATCCGGGCTCATGTGATGGCCTCCCACCAT < 41bp 0.710632408812111 0.448636756193916 0.6250846 0.5115307 prediction 0.421264817624221 Functional Loss - MLPH ENSG00000115648 CDS Human protein_coding chr2:238436103 chr2:238436105 synonymous SNV . 0 23 hm5C_associated_SNPs_89292 0 0 0 0 1 MLPH chr2:238436159 5'GT 238436159 Upstream 55bp
chr20 20007511 20007511 1 + C T UCEC 20007508 + 20007488 20007528 41 TGTCTGTTGCCCCAGAATTTCGACGCCTTGGTTTGGCTGCT TGTCTGTTGCCCCAGAATTTCGATGCCTTGGTTTGGCTGCT < 41bp 0.710632286916717 0.493540701463877 0.86865586 0.7373962 prediction 0.421264573833433 Functional Loss - NAA20 ENSG00000173418 CDS Human protein_coding chr20:20007508 chr20:20007511 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_89293 0 0 1 0 2 NAA20 chr20:20007428 3'AG 20007428 Downstream 84bp
chr20 20007511 20007511 1 + C T UCEC 20007508 + 20007488 20007528 41 TGTCTGTTGCCCCAGAATTTCGACGCCTTGGTTTGGCTGCT TGTCTGTTGCCCCAGAATTTCGATGCCTTGGTTTGGCTGCT < 41bp 0.710632286916717 0.493540701463877 0.86865586 0.7373962 prediction 0.421264573833433 Functional Loss - NAA20 ENSG00000173418 CDS Human protein_coding chr20:20007508 chr20:20007511 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_89293 0 0 1 0 2 NAA20 chr20:20007563 5'GT 20007563 Upstream 53bp
chr22 40803287 40803287 1 + C T LGG 40803285 + 40803265 40803305 41 ACCTCCGGGAAGCCATCCTGCGCGTGGCACGCCACTTCCAG ACCTCCGGGAAGCCATCCTGCGTGTGGCACGCCACTTCCAG < 41bp 0.710631714324618 0.437262677718684 0.75102127 0.31855237 prediction 0.421263428649235 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40803285 chr22:40803287 synonymous SNV . 0 23 hm5C_associated_SNPs_89294 0 0 1 0 2 SGSM3 chr22:40803205 3'AG 40803205 Downstream 83bp
chr22 40803287 40803287 1 + C T LGG 40803285 + 40803265 40803305 41 ACCTCCGGGAAGCCATCCTGCGCGTGGCACGCCACTTCCAG ACCTCCGGGAAGCCATCCTGCGTGTGGCACGCCACTTCCAG < 41bp 0.710631714324618 0.437262677718684 0.75102127 0.31855237 prediction 0.421263428649235 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40803285 chr22:40803287 synonymous SNV . 0 23 hm5C_associated_SNPs_89294 0 0 1 0 2 SGSM3 chr22:40803332 5'GT 40803332 Upstream 46bp
chr22 40803288 40803288 1 + G A UCEC 40803285 + 40803265 40803305 41 ACCTCCGGGAAGCCATCCTGCGCGTGGCACGCCACTTCCAG ACCTCCGGGAAGCCATCCTGCGCATGGCACGCCACTTCCAG < 41bp 0.710631714324618 0.474330729525766 0.75102127 0.2822476 prediction 0.421263428649235 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40803285 chr22:40803288 nonsynonymous SNV 0.783 4 24 hm5C_associated_SNPs_89295 0 0 1 0 2 SGSM3 chr22:40803205 3'AG 40803205 Downstream 84bp
chr22 40803288 40803288 1 + G A UCEC 40803285 + 40803265 40803305 41 ACCTCCGGGAAGCCATCCTGCGCGTGGCACGCCACTTCCAG ACCTCCGGGAAGCCATCCTGCGCATGGCACGCCACTTCCAG < 41bp 0.710631714324618 0.474330729525766 0.75102127 0.2822476 prediction 0.421263428649235 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40803285 chr22:40803288 nonsynonymous SNV 0.783 4 24 hm5C_associated_SNPs_89295 0 0 1 0 2 SGSM3 chr22:40803332 5'GT 40803332 Upstream 45bp
chr10 112266868 112266868 1 + C T OV 112266866 + 112266846 112266886 41 ATCCCTGTGGAAGACAGCCACACGGCTGACATTAGCTCCCA ATCCCTGTGGAAGACAGCCACATGGCTGACATTAGCTCCCA < 41bp 0.85182569570049 0.641194678901955 0.32539278 0.47643894 prediction 0.42126203359707 Functional Loss - DUSP5 ENSG00000138166 CDS Human protein_coding chr10:112266866 chr10:112266868 nonsynonymous SNV 0.958 2 23 hm5C_associated_SNPs_89296 0 0 0 0 1 DUSP5 chr10:112266912 5'GT 112266912 Upstream 45bp
chr3 127682174 127682174 1 + C T GBM 127682171 + 127682151 127682191 41 CTCTCACTCCGCACCAATTCCACCAATGCAGGGGCAGTGGA CTCTCACTCCGCACCAATTCCACTAATGCAGGGGCAGTGGA < 41bp 0.788037732912473 0.577408752308923 0.32650566 0.15160826 prediction 0.4212579612071 Functional Loss - KBTBD12 ENSG00000187715 CDS Human protein_coding chr3:127682171 chr3:127682174 synonymous SNV . 0 24 hm5C_associated_SNPs_89298 0 0 0 0 1 KBTBD12 chr3:127682229 5'GT 127682229 Upstream 56bp
chr11 30354531 30354531 1 + G A UCS 30354528 + 30354508 30354548 41 GCTTACAAAAAATGCAACCGCTGGTTCAGACAGGTAGGCTA GCTTACAAAAAATGCAACCGCTGATTCAGACAGGTAGGCTA < 41bp 0.771781366904646 0.561155814776389 0.039339364 0.018227816 prediction 0.421251104256514 Functional Loss - ARL14EP ENSG00000152219 CDS Human protein_coding chr11:30354528 chr11:30354531 nonsynonymous SNV 0.760 0 24 hm5C_associated_SNPs_89300 0 0 0 0 1 ARL14EP chr11:30354540 5'GT 30354540 Upstream 10bp
chr15 41148097 41148097 1 + C T COAD 41148094 + 41148074 41148114 41 ACCCCATACCCCCCAGGGCACTGCGTGGACCTGCCAGACAC ACCCCATACCCCCCAGGGCACTGTGTGGACCTGCCAGACAC < 41bp 0.724832773647658 0.51420753045408 0.10679987 0.08784285 prediction 0.421250486387155 Functional Loss - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41148094 chr15:41148097 synonymous SNV . 0 24 hm5C_associated_SNPs_89302 0 0 0 0 1 SPINT1 chr15:41148090 3'AG 41148090 Downstream 8bp
chr19 19162527 19162527 1 + G T LUSC 19162523 + 19162503 19162543 41 TGCGACCAGTGCAAACAGGACAAGGCCTGCCGCTTCCTCGC TGCGACCAGTGCAAACAGGACAAGTCCTGCCGCTTCCTCGC < 41bp 0.734254139368 0.523638212836091 0.34375313 0.08913663 prediction 0.421231853063818 Functional Loss - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19162523 chr19:19162527 nonsynonymous SNV 0.640 0 25 hm5C_associated_SNPs_89309 0 0 0 0 1 ARMC6 chr19:19162431 3'AG 19162431 Downstream 97bp
chr15 57524982 57524982 1 + G A rs12442879 57524979 + 57524959 57524999 41 CACCAATGTCCAGCTTTCATCGCGGCAGTACCAGCAGTTCA CACCAATGTCCAGCTTTCATCGCAGCAGTACCAGCAGTTCA < 41bp 0.759595811831475 0.548981051524121 0.81351805 0.4231795 prediction 0.421229520614708 Functional Loss - TCF12 ENSG00000140262 CDS Human protein_coding chr15:57524979 chr15:57524982 nonsynonymous SNV 0.494 1 24 hm5C_associated_SNPs_89310 1 0 1 0 1 TCF12 chr15:57525054 5'GT 57525054 Upstream 73bp
chr6 112382217 112382217 1 + T C rs1230346 112382216 + 112382196 112382236 41 CTGCTGCAGGGTACAGGGCACTGGACCATTAGATACAACAC CTGCTGCAGGGTACAGGGCACCGGACCATTAGATACAACAC < 41bp 0.793916023090698 0.583304809300851 0.12557769 0.09631243 prediction 0.421222427579693 Functional Loss - WISP3 ENSG00000112761 CDS Human protein_coding chr6:112382216 chr6:112382217 synonymous SNV . 0 22 hm5C_associated_SNPs_89313 1 0 0 0 1 WISP3 chr6:112382194 3'AG 112382194 Downstream 24bp
chr1 3395096 3395096 1 + C T COAD 3395093 + 3395073 3395113 41 GGGGGCGGCAACCGTAGCTCCTCCGTGCCCCACCCCTTCCA GGGGGCGGCAACCGTAGCTCCTCTGTGCCCCACCCCTTCCA < 41bp 0.74007349641246 0.529463453602258 0.1574134 0.038954407 prediction 0.421220085620404 Functional Loss - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3395093 chr1:3395096 synonymous SNV . 0 24 hm5C_associated_SNPs_89314 0 0 1 0 1 ARHGEF16 chr1:3395176 5'GT 3395176 Upstream 81bp
chr17 40462541 40462541 1 + G A UCEC 40462538 + 40462518 40462558 41 TTACCAGCCCTGACCATGTACTCGATCAGGATGGAGAATTC TTACCAGCCCTGACCATGTACTCAATCAGGATGGAGAATTC < 41bp 0.772178891282892 0.561570579147711 0.21941975 0.06286216 prediction 0.421216624270362 Functional Loss - STAT5A ENSG00000126561 CDS Human protein_coding chr17:40462538 chr17:40462541 nonsynonymous SNV 0.882 4 24 hm5C_associated_SNPs_89315 0 0 1 0 1 STAT5A chr17:40462525 3'AG 40462525 Downstream 17bp
chr6 150266502 150266502 1 + G A COAD 150266499 + 150266479 150266519 41 CCCTAAGTTCAGACCTGGACCACGGTGGTGTGCGGTTCAAG CCCTAAGTTCAGACCTGGACCACAGTGGTGTGCGGTTCAAG < 41bp 0.796778389574999 0.586171500746117 0.38793156 0.17375654 prediction 0.421213777657763 Functional Loss - ULBP2 ENSG00000131015 CDS Human protein_coding chr6:150266499 chr6:150266502 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_89317 0 0 0 0 1 ULBP2 chr6:150266445 3'AG 150266445 Downstream 58bp
chr5 169267785 169267785 1 + G A LUAD 169267782 + 169267762 169267802 41 CCTTCACCTACCACCATATCCAGGAGATCATGGTCCAGCTG CCTTCACCTACCACCATATCCAGAAGATCATGGTCCAGCTG < 41bp 0.752039487935123 0.541433398215434 0.87367445 0.6220567 prediction 0.421212179439377 Functional Loss - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169267782 chr5:169267785 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_89318 0 0 1 0 2 DOCK2 chr5:169267761 3'AG 169267761 Downstream 25bp
chr5 169267785 169267785 1 + G A LUAD 169267782 + 169267762 169267802 41 CCTTCACCTACCACCATATCCAGGAGATCATGGTCCAGCTG CCTTCACCTACCACCATATCCAGAAGATCATGGTCCAGCTG < 41bp 0.752039487935123 0.541433398215434 0.87367445 0.6220567 prediction 0.421212179439377 Functional Loss - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169267782 chr5:169267785 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_89318 0 0 1 0 2 DOCK2 chr5:169267856 5'GT 169267856 Upstream 72bp
chr1 15668286 15668286 1 + C T rs546776394 15668283 + 15668263 15668303 41 AGTCTTTACTGCAGGAAAAGCTGCGGGAGCATCTGGCAGAG AGTCTTTACTGCAGGAAAAGCTGTGGGAGCATCTGGCAGAG < 41bp 0.710602105263641 0.489259988634288 0.39625186 0.29018342 prediction 0.421204210527281 Functional Loss - FHAD1 ENSG00000142621 CDS Human protein_coding chr1:15668283 chr1:15668286 nonsynonymous SNV 0.276 0 24 hm5C_associated_SNPs_89319 0 0 0 0 1 FHAD1 chr1:15668384 5'GT 15668384 Upstream 99bp
chr12 132394824 132394824 1 + C T SKCM 132394822 + 132394802 132394842 41 AGTTTTTTCATCACCCTTTCCTCGATGCCAGCCCCTCGGTC AGTTTTTTCATCACCCTTTCCTTGATGCCAGCCCCTCGGTC < 41bp 0.710599102607073 0.434498294970085 0.89816904 0.14741221 prediction 0.421198205214145 Functional Loss - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132394822 chr12:132394824 synonymous SNV . 0 23 hm5C_associated_SNPs_89321 0 0 1 0 2 ULK1 chr12:132394799 3'AG 132394799 Downstream 26bp
chr12 132394824 132394824 1 + C T SKCM 132394822 + 132394802 132394842 41 AGTTTTTTCATCACCCTTTCCTCGATGCCAGCCCCTCGGTC AGTTTTTTCATCACCCTTTCCTTGATGCCAGCCCCTCGGTC < 41bp 0.710599102607073 0.434498294970085 0.89816904 0.14741221 prediction 0.421198205214145 Functional Loss - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132394822 chr12:132394824 synonymous SNV . 0 23 hm5C_associated_SNPs_89321 0 0 1 0 2 ULK1 chr12:132394849 5'GT 132394849 Upstream 26bp
chr12 132394825 132394825 1 + G A UCEC 132394822 + 132394802 132394842 41 AGTTTTTTCATCACCCTTTCCTCGATGCCAGCCCCTCGGTC AGTTTTTTCATCACCCTTTCCTCAATGCCAGCCCCTCGGTC < 41bp 0.710599102607073 0.451574423471175 0.89816904 0.48971167 prediction 0.421198205214145 Functional Loss - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132394822 chr12:132394825 nonsynonymous SNV 0.057 2 24 hm5C_associated_SNPs_89322 0 0 1 0 2 ULK1 chr12:132394799 3'AG 132394799 Downstream 27bp
chr12 132394825 132394825 1 + G A UCEC 132394822 + 132394802 132394842 41 AGTTTTTTCATCACCCTTTCCTCGATGCCAGCCCCTCGGTC AGTTTTTTCATCACCCTTTCCTCAATGCCAGCCCCTCGGTC < 41bp 0.710599102607073 0.451574423471175 0.89816904 0.48971167 prediction 0.421198205214145 Functional Loss - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132394822 chr12:132394825 nonsynonymous SNV 0.057 2 24 hm5C_associated_SNPs_89322 0 0 1 0 2 ULK1 chr12:132394849 5'GT 132394849 Upstream 25bp
chr5 132086601 132086601 1 + C T UCEC 132086599 + 132086579 132086619 41 CACTATGGCTCTGACTATTCCCCGAATGAGCTGCTGAGGAT CACTATGGCTCTGACTATTCCCTGAATGAGCTGCTGAGGAT < 41bp 0.710597123871491 0.406813740914638 0.02080208 0.029771388 prediction 0.421194247742982 Functional Loss - CCNI2 ENSG00000205089 CDS Human protein_coding chr5:132086599 chr5:132086601 nonsynonymous SNV 0.669 3 23 hm5C_associated_SNPs_89325 0 0 0 0 2 CCNI2 chr5:132086549 3'AG 132086549 Downstream 53bp
chr5 132086601 132086601 1 + C T UCEC 132086599 + 132086579 132086619 41 CACTATGGCTCTGACTATTCCCCGAATGAGCTGCTGAGGAT CACTATGGCTCTGACTATTCCCTGAATGAGCTGCTGAGGAT < 41bp 0.710597123871491 0.406813740914638 0.02080208 0.029771388 prediction 0.421194247742982 Functional Loss - CCNI2 ENSG00000205089 CDS Human protein_coding chr5:132086599 chr5:132086601 nonsynonymous SNV 0.669 3 23 hm5C_associated_SNPs_89325 0 0 0 0 2 CCNI2 chr5:132086689 5'GT 132086689 Upstream 89bp
chr1 67148041 67148041 1 + G A PRAD 67148038 + 67148018 67148058 41 ACCTGGCTCGGGCCCTGGTCCGGGGACCACCAGTGGTATGT ACCTGGCTCGGGCCCTGGTCCGGAGACCACCAGTGGTATGT < 41bp 0.800889106502659 0.590293452064052 0.9239533 0.8899806 prediction 0.421191308877213 Functional Loss - SGIP1 ENSG00000118473 CDS Human protein_coding chr1:67148038 chr1:67148041 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_89326 0 0 0 0 1 SGIP1 chr1:67148052 5'GT 67148052 Upstream 12bp
chr2 79255397 79255397 1 + G C LUAD 79255393 + 79255373 79255413 41 TTACCCTATGTCTGCAAGTTCAAGGACTAGGGCAGGTGGGA TTACCCTATGTCTGCAAGTTCAAGCACTAGGGCAGGTGGGA < 41bp 0.710593500494621 0.425128242709673 0.5282502 0.284562 prediction 0.421187000989242 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79255393 chr2:79255397 nonsynonymous SNV 0.875 2 25 hm5C_associated_SNPs_89328 0 0 0 0 1 REG3G chr2:79255335 3'AG 79255335 Downstream 63bp
chr2 79255396 79255396 1 + G T UCEC 79255393 + 79255373 79255413 41 TTACCCTATGTCTGCAAGTTCAAGGACTAGGGCAGGTGGGA TTACCCTATGTCTGCAAGTTCAATGACTAGGGCAGGTGGGA < 41bp 0.710593500494621 0.311050684529202 0.5282502 0.253511 prediction 0.421187000989242 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79255393 chr2:79255396 nonsynonymous SNV 0.883 1 24 hm5C_associated_SNPs_89329 0 0 0 0 1 REG3G chr2:79255335 3'AG 79255335 Downstream 62bp
chr14 100375707 100375707 1 + C T rs34198557 100375704 + 100375684 100375724 41 CTCTAATGAAGCTGTGTTTGCTGCGGATTTCCACCCCACGG CTCTAATGAAGCTGTGTTTGCTGTGGATTTCCACCCCACGG < 41bp 0.744305673196695 0.533712661010395 0.36045098 0.18547133 prediction 0.4211860243726 Functional Loss - EML1 ENSG00000066629 CDS Human protein_coding chr14:100375704 chr14:100375707 nonsynonymous SNV 0.821 0 24 hm5C_associated_SNPs_89330 0 0 0 0 1 EML1 chr14:100375682 3'AG 100375682 Downstream 26bp
chr19 39789086 39789086 1 + C T CESC 39789084 + 39789064 39789104 41 TTCAACCTCTTCCGCCTCCTCACGCGAGACCTCAAATATGT TTCAACCTCTTCCGCCTCCTCATGCGAGACCTCAAATATGT < 41bp 0.710592393897201 0.45105351886655 0.030607283 0.017558753 prediction 0.421184787794403 Functional Loss - IFNL1 ENSG00000182393 CDS Human protein_coding chr19:39789084 chr19:39789086 nonsynonymous SNV 0.006 3 23 hm5C_associated_SNPs_89333 0 0 0 0 1 IFNL1 chr19:39789031 3'AG 39789031 Downstream 56bp
chr19 39789087 39789087 1 + G A LUAD 39789084 + 39789064 39789104 41 TTCAACCTCTTCCGCCTCCTCACGCGAGACCTCAAATATGT TTCAACCTCTTCCGCCTCCTCACACGAGACCTCAAATATGT < 41bp 0.710592393897201 0.46832845184918 0.030607283 0.003176242 prediction 0.421184787794403 Functional Loss - IFNL1 ENSG00000182393 CDS Human protein_coding chr19:39789084 chr19:39789087 synonymous SNV . 0 24 hm5C_associated_SNPs_89334 0 0 0 0 1 IFNL1 chr19:39789031 3'AG 39789031 Downstream 57bp
chr1 16374459 16374459 1 + G A OV 16374456 + 16374436 16374476 41 GTGTGGTCTTGGAGGACTACCTGGATATCAAGAACTTTGGG GTGTGGTCTTGGAGGACTACCTGAATATCAAGAACTTTGGG < 41bp 0.812430246348618 0.601838175195288 0.53486335 0.48532507 prediction 0.421184142306661 Functional Loss - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16374456 chr1:16374459 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_89335 0 0 0 0 2 CLCNKB chr1:16374400 3'AG 16374400 Downstream 60bp
chr1 16374459 16374459 1 + G A OV 16374456 + 16374436 16374476 41 GTGTGGTCTTGGAGGACTACCTGGATATCAAGAACTTTGGG GTGTGGTCTTGGAGGACTACCTGAATATCAAGAACTTTGGG < 41bp 0.812430246348618 0.601838175195288 0.53486335 0.48532507 prediction 0.421184142306661 Functional Loss - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16374456 chr1:16374459 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_89335 0 0 0 0 2 CLCNKB chr1:16374539 5'GT 16374539 Upstream 81bp
chr12 71946932 71946932 1 + G A CESC 71946929 + 71946909 71946949 41 ATTCCCTGAGGCACCTGTGGCTGGATGACAATGCGTTAACA ATTCCCTGAGGCACCTGTGGCTGAATGACAATGCGTTAACA < 41bp 0.794297631806336 0.58371275096525 0.6432669 0.30614606 prediction 0.42116976168217 Functional Loss - LGR5 ENSG00000139292 CDS Human protein_coding chr12:71946929 chr12:71946932 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_89344 0 0 1 0 1 LGR5 chr12:71946853 3'AG 71946853 Downstream 80bp
chr2 169717417 169717417 1 + C T rs61730433 169717414 + 169717394 169717434 41 GAGCAATCCAGGTTCTTCAACTCCAGGTAATCCCATGCCCA GAGCAATCCAGGTTCTTCAACTCTAGGTAATCCCATGCCCA < 41bp 0.710581479592713 0.495042869385218 0.70307255 0.22555578 prediction 0.421162959185425 Functional Loss - NOSTRIN ENSG00000163072 CDS Human protein_coding chr2:169717414 chr2:169717417 nonsynonymous SNV 0.321 0 24 hm5C_associated_SNPs_89347 0 0 0 0 1 NOSTRIN chr2:169717419 5'GT 169717419 Upstream 3bp
chr4 17524637 17524637 1 + G A LUAD 17524634 + 17524614 17524654 41 GTACCGGGCAGTCAGCGGTCCTGGGGGCATCTGCCTATGGA GTACCGGGCAGTCAGCGGTCCTGAGGGCATCTGCCTATGGA < 41bp 0.814650257474275 0.604069756325578 0.89149815 0.17211968 prediction 0.421161002297395 Functional Loss - CLRN2 ENSG00000249581 CDS Human protein_coding chr4:17524634 chr4:17524637 nonsynonymous SNV 0.565 0 24 hm5C_associated_SNPs_89348 0 0 0 0 1 CLRN2 chr4:17524666 5'GT 17524666 Upstream 30bp
chr12 126947292 126947292 1 + C T UCEC 126947290 + 126947270 126947310 41 TCCGCTGAGCAGTGCCTCCTCCCGATTCAGCACGTCCCTGG TCCGCTGAGCAGTGCCTCCTCCTGATTCAGCACGTCCCTGG < 41bp 0.782766366969814 0.572187338725546 0.059046626 0.05834505 prediction 0.421158056488536 Functional Loss - LINC02347 ENSG00000214043 ncRNA_exonic Human lincRNA chr12:126947290 chr12:126947292 . . 0 23 hm5C_associated_SNPs_89349 0 0 0 0 2 LINC02347 chr12:126947264 3'AG 126947264 Downstream 29bp
chr12 126947292 126947292 1 + C T UCEC 126947290 + 126947270 126947310 41 TCCGCTGAGCAGTGCCTCCTCCCGATTCAGCACGTCCCTGG TCCGCTGAGCAGTGCCTCCTCCTGATTCAGCACGTCCCTGG < 41bp 0.782766366969814 0.572187338725546 0.059046626 0.05834505 prediction 0.421158056488536 Functional Loss - LINC02347 ENSG00000214043 ncRNA_exonic Human lincRNA chr12:126947290 chr12:126947292 . . 0 23 hm5C_associated_SNPs_89349 0 0 0 0 2 LINC02347 chr12:126947371 5'GT 126947371 Upstream 80bp
chr6 44102463 44102463 1 + G A SKCM 44102460 + 44102440 44102480 41 GCGTCCCCACCGTGCTGGCTCTCGACTTCATGTGCTTCCTT GCGTCCCCACCGTGCTGGCTCTCAACTTCATGTGCTTCCTT < 41bp 0.820182476686536 0.609605001693479 0.17934325 0.04962477 prediction 0.421154949986113 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44102460 chr6:44102463 nonsynonymous SNV 0.986 3 24 hm5C_associated_SNPs_89350 0 0 1 0 1 TMEM63B chr6:44102480 5'GT 44102480 Upstream 18bp
chr22 18066272 18066272 1 + G T UCEC 18066269 + 18066249 18066289 41 ACCTGTCCCATGGAAATGCTCAAGATTCAGCTGCAGGATGC ACCTGTCCCATGGAAATGCTCAATATTCAGCTGCAGGATGC < 41bp 0.938268347338733 0.727697655939528 0.7136734 0.2844341 prediction 0.42114138279841 Functional Loss - SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18066269 chr22:18066272 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_89352 0 0 0 0 2 SLC25A18 chr22:18066182 3'AG 18066182 Downstream 91bp
chr22 18066272 18066272 1 + G T UCEC 18066269 + 18066249 18066289 41 ACCTGTCCCATGGAAATGCTCAAGATTCAGCTGCAGGATGC ACCTGTCCCATGGAAATGCTCAATATTCAGCTGCAGGATGC < 41bp 0.938268347338733 0.727697655939528 0.7136734 0.2844341 prediction 0.42114138279841 Functional Loss - SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18066269 chr22:18066272 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_89352 0 0 0 0 2 SLC25A18 chr22:18066300 5'GT 18066300 Upstream 29bp
chr11 1955025 1955025 1 + G T UCEC 1955023 + 1955003 1955043 41 TCGACAGCCACTTTGAAGCCCGGAAGAAGGAGGAGGAGGAG TCGACAGCCACTTTGAAGCCCGTAAGAAGGAGGAGGAGGAG < 41bp 0.710568625159769 0.37281968295397 0.41526023 0.14878935 prediction 0.421137250319538 Functional Loss - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1955023 chr11:1955025 synonymous SNV . 0 23 hm5C_associated_SNPs_89353 0 0 0 0 2 TNNT3 chr11:1954951 3'AG 1954951 Downstream 75bp
chr11 1955025 1955025 1 + G T UCEC 1955023 + 1955003 1955043 41 TCGACAGCCACTTTGAAGCCCGGAAGAAGGAGGAGGAGGAG TCGACAGCCACTTTGAAGCCCGTAAGAAGGAGGAGGAGGAG < 41bp 0.710568625159769 0.37281968295397 0.41526023 0.14878935 prediction 0.421137250319538 Functional Loss - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1955023 chr11:1955025 synonymous SNV . 0 23 hm5C_associated_SNPs_89353 0 0 0 0 2 TNNT3 chr11:1955067 5'GT 1955067 Upstream 43bp
chrX 10106827 10106827 1 + C T UCEC 10106825 + 10106805 10106845 41 GGATCTCCAGGCGTCGAGAACACGGCAGAGGCAGCTGAATG GGATCTCCAGGCGTCGAGAACATGGCAGAGGCAGCTGAATG < 41bp 0.710567200590394 0.437772442924106 0.531125 0.44076228 prediction 0.421134401180788 Functional Loss - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10106825 chrX:10106827 nonsynonymous SNV 0.985 1 23 hm5C_associated_SNPs_89356 0 0 0 0 1 WWC3 chrX:10106749 3'AG 10106749 Downstream 79bp
chrX 64949312 64949312 1 + G A BLCA 64949309 + 64949289 64949329 41 ACTCTTCCCAGGTGACTGCCCAGGATGTGCGGAAGGAAAGC ACTCTTCCCAGGTGACTGCCCAGAATGTGCGGAAGGAAAGC < 41bp 0.808834666592894 0.598270180097351 0.8496684 0.34408772 prediction 0.421128972991086 Functional Loss - MSN ENSG00000147065 CDS Human protein_coding chrX:64949309 chrX:64949312 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_89358 0 0 1 0 1 MSN chrX:64949300 3'AG 64949300 Downstream 13bp
chrX 105132306 105132306 1 + G T TGCT 105132304 + 105132284 105132324 41 TAGGATGAGGAAGAGGATCTCAGGACTGAACTCAACCTTCT TAGGATGAGGAAGAGGATCTCATGACTGAACTCAACCTTCT < 41bp 0.710562529624062 0.369781715239138 0.89913046 0.3186146 prediction 0.421125059248124 Functional Loss - NRK ENSG00000123572 CDS Human protein_coding chrX:105132304 chrX:105132306 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_89359 0 0 0 0 1 NRK chrX:105132287 3'AG 105132287 Downstream 20bp
chr12 81528724 81528724 1 + A C COAD 81528720 + 81528700 81528740 41 TGTGCAAGGATAGGTGCCATCCACAGTCTCATATTTGGAGG TGTGCAAGGATAGGTGCCATCCACCGTCTCATATTTGGAGG < 41bp 0.710561837266541 0.291318840763226 0.0744265 0.040643692 prediction 0.421123674533081 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81528720 chr12:81528724 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_89360 0 0 1 0 1 ACSS3 chr12:81528783 5'GT 81528783 Upstream 60bp
chr22 18020403 18020403 1 + G A LUSC 18020400 + 18020380 18020420 41 GCAGCTCCACACAGCCCCCGCGGGAGGTGGGCACTTCCAAT GCAGCTCCACACAGCCCCCGCGGAAGGTGGGCACTTCCAAT < 41bp 0.835853117953722 0.625293304446157 0.9185668 0.9118352 prediction 0.42111962701513 Functional Loss - CECR2 ENSG00000099954 CDS Human protein_coding chr22:18020400 chr22:18020403 nonsynonymous SNV 0.442 1 24 hm5C_associated_SNPs_89363 0 0 1 0 1 CECR2 chr22:18020489 5'GT 18020489 Upstream 87bp
chr4 17814557 17814557 1 + C T rs138337880 17814554 + 17814534 17814574 41 TTTTAGTCTCATGAAGCAAACAGCAATGCAGTGAGATTTAG TTTTAGTCTCATGAAGCAAACAGTAATGCAGTGAGATTTAG < 41bp 0.713293350738091 0.502736938138288 0.09934348 0.20046458 prediction 0.421112825199606 Functional Loss - NCAPG ENSG00000109805 CDS Human protein_coding chr4:17814554 chr4:17814557 synonymous SNV . 0 24 hm5C_associated_SNPs_89365 0 0 1 0 1 NCAPG chr4:17814540 3'AG 17814540 Downstream 18bp
chr11 57313454 57313454 1 + C T LUSC 57313452 + 57313432 57313472 41 GCGCAGGGTATCAGCCCCTGCTCGGCCCCGGGGGCCCCGGG GCGCAGGGTATCAGCCCCTGCTTGGCCCCGGGGGCCCCGGG < 41bp 0.851027418142313 0.640473573892228 0.21768606 0.15874168 prediction 0.421107688500168 Functional Loss - SMTNL1 ENSG00000214872 CDS Human protein_coding chr11:57313452 chr11:57313454 nonsynonymous SNV 0.452 3 23 hm5C_associated_SNPs_89366 0 0 0 0 1 SMTNL1 chr11:57313509 5'GT 57313509 Upstream 56bp
chr19 10221246 10221246 1 + G T LUSC 10221244 + 10221224 10221264 41 AGGCGCAGAGGCAGGCCCAGCAGGCCCAGAATGTGCAGCGC AGGCGCAGAGGCAGGCCCAGCATGCCCAGAATGTGCAGCGC < 41bp 0.710548577966391 0.345005432556012 0.8343966 0.15071288 prediction 0.421097155932781 Functional Loss - PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10221244 chr19:10221246 nonsynonymous SNV 0.336 3 23 hm5C_associated_SNPs_89370 0 0 1 0 2 PPAN;PPAN-P2RY11 chr19:10221161 3'AG 10221161 Downstream 86bp
chr19 10221246 10221246 1 + G T LUSC 10221244 + 10221224 10221264 41 AGGCGCAGAGGCAGGCCCAGCAGGCCCAGAATGTGCAGCGC AGGCGCAGAGGCAGGCCCAGCATGCCCAGAATGTGCAGCGC < 41bp 0.710548577966391 0.345005432556012 0.8343966 0.15071288 prediction 0.421097155932781 Functional Loss - PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10221244 chr19:10221246 nonsynonymous SNV 0.336 3 23 hm5C_associated_SNPs_89370 0 0 1 0 2 PPAN;PPAN-P2RY11 chr19:10221290 5'GT 10221290 Upstream 45bp
chr3 9965688 9965688 1 + G A UCEC 9965685 + 9965665 9965705 41 GGTCCAGGGCCCCCCAAAACCCCGGTGGCACAAAAACCTGG GGTCCAGGGCCCCCCAAAACCCCAGTGGCACAAAAACCTGG < 41bp 0.79003381982455 0.579485823961111 0.8011339 0.51367176 prediction 0.421095991726878 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9965685 chr3:9965688 nonsynonymous SNV 0.310 0 24 hm5C_associated_SNPs_89371 0 0 1 0 1 IL17RC chr3:9965704 5'GT 9965704 Upstream 17bp
chrX 65417698 65417698 1 + G A LUSC 65417695 + 65417675 65417715 41 CTGGCCTGGTGGGCCCGCTGCTGGTGTGCAGGGCTGGTGCC CTGGCCTGGTGGGCCCGCTGCTGATGTGCAGGGCTGGTGCC < 41bp 0.710547964942745 0.447190555446973 0.38232198 0.22700596 prediction 0.421095929885489 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65417695 chrX:65417698 nonsynonymous SNV 0.781 5 24 hm5C_associated_SNPs_89372 0 0 1 0 1 HEPH chrX:65417736 5'GT 65417736 Upstream 39bp
chr5 137761147 137761147 1 + G A ESCA 137761144 + 137761124 137761164 41 AAAAAGCTCAAGTCTGAGCTCTGGAAGCCAGAAGCCTTTAG AAAAAGCTCAAGTCTGAGCTCTGAAAGCCAGAAGCCTTTAG < 41bp 0.785333405527655 0.574788006571064 0.2230317 0.107409775 prediction 0.421090797913182 Functional Loss - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137761144 chr5:137761147 stopgain 1.000 1 24 hm5C_associated_SNPs_89374 0 0 1 0 1 KDM3B chr5:137761100 3'AG 137761100 Downstream 48bp
chr17 7918813 7918813 1 + G T SARC 7918811 + 7918791 7918831 41 CCGTGCGCATCCGCATAGGCCTGCACTCGGGTAACTCCCGG CCGTGCGCATCCGCATAGGCCTTCACTCGGGTAACTCCCGG < 41bp 0.710543054829078 0.364199003741266 0.330073 0.46852857 prediction 0.421086109658156 Functional Loss - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7918811 chr17:7918813 synonymous SNV . 0 23 hm5C_associated_SNPs_89376 0 0 0 0 1 GUCY2D chr17:7918820 5'GT 7918820 Upstream 8bp
chr17 42786685 42786685 1 + C T HNSC 42786683 + 42786663 42786703 41 CTTTCTCAGGAGACGATTGCCTCGAGCTGGAGAGTTCCATG CTTTCTCAGGAGACGATTGCCTTGAGCTGGAGAGTTCCATG < 41bp 0.84064807780721 0.63010987745565 0.4731842 0.32283092 prediction 0.42107640070312 Functional Loss - DBF4B ENSG00000161692 CDS Human protein_coding chr17:42786683 chr17:42786685 synonymous SNV . 0 23 hm5C_associated_SNPs_89380 0 0 1 0 2 DBF4B chr17:42786672 3'AG 42786672 Downstream 14bp
chr17 42786685 42786685 1 + C T HNSC 42786683 + 42786663 42786703 41 CTTTCTCAGGAGACGATTGCCTCGAGCTGGAGAGTTCCATG CTTTCTCAGGAGACGATTGCCTTGAGCTGGAGAGTTCCATG < 41bp 0.84064807780721 0.63010987745565 0.4731842 0.32283092 prediction 0.42107640070312 Functional Loss - DBF4B ENSG00000161692 CDS Human protein_coding chr17:42786683 chr17:42786685 synonymous SNV . 0 23 hm5C_associated_SNPs_89380 0 0 1 0 2 DBF4B chr17:42786734 5'GT 42786734 Upstream 50bp
chr3 14708970 14708970 1 + G A CESC 14708967 + 14708947 14708987 41 TGTTGGGTATTTTGCCTTTGCCCGAGACAAAGAGTTGAGAA TGTTGGGTATTTTGCCTTTGCCCAAGACAAAGAGTTGAGAA < 41bp 0.778713639065464 0.568175933864223 0.76579714 0.27560037 prediction 0.421075410402481 Functional Loss - CCDC174 ENSG00000154781 CDS Human protein_coding chr3:14708967 chr3:14708970 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_89381 0 0 1 0 2 CCDC174 chr3:14708931 3'AG 14708931 Downstream 40bp
chr3 14708970 14708970 1 + G A CESC 14708967 + 14708947 14708987 41 TGTTGGGTATTTTGCCTTTGCCCGAGACAAAGAGTTGAGAA TGTTGGGTATTTTGCCTTTGCCCAAGACAAAGAGTTGAGAA < 41bp 0.778713639065464 0.568175933864223 0.76579714 0.27560037 prediction 0.421075410402481 Functional Loss - CCDC174 ENSG00000154781 CDS Human protein_coding chr3:14708967 chr3:14708970 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_89381 0 0 1 0 2 CCDC174 chr3:14709025 5'GT 14709025 Upstream 56bp
chr2 219227598 219227598 1 + C T ESCA 219227595 + 219227575 219227615 41 GCCCGCTTCCTGACCTTGGACACCGAGGGCAAACTCTGCTA GCCCGCTTCCTGACCTTGGACACTGAGGGCAAACTCTGCTA < 41bp 0.732162081004537 0.521625729538981 0.18642408 0.19796738 prediction 0.421072702931113 Functional Loss - CATIP ENSG00000158428 CDS Human protein_coding chr2:219227595 chr2:219227598 synonymous SNV . 0 24 hm5C_associated_SNPs_89382 0 0 0 0 1 CATIP chr2:219227625 5'GT 219227625 Upstream 28bp
chr16 30770348 30770348 1 - G A GBM 30770350 - 30770330 30770370 41 GGAACTAGAGACAGTGGCCCCACCAGAGCCAGAGCCAAGTG GGAACTAGAGACAGTGGCCCCATCAGAGCCAGAGCCAAGTG < 41bp 0.850593082315643 0.640057846416571 0.15483776 0.2641173 prediction 0.421070471798144 Functional Loss - CCDC189 ENSG00000196118 CDS Human protein_coding chr16:30770350 chr16:30770348 nonsynonymous SNV 0.152 0 23 hm5C_associated_SNPs_89383 0 0 0 0 2 CCDC189 chr16:30770333 5'GT 30770333 Upstream 16bp
chr16 30770348 30770348 1 - G A GBM 30770350 - 30770330 30770370 41 GGAACTAGAGACAGTGGCCCCACCAGAGCCAGAGCCAAGTG GGAACTAGAGACAGTGGCCCCATCAGAGCCAGAGCCAAGTG < 41bp 0.850593082315643 0.640057846416571 0.15483776 0.2641173 prediction 0.421070471798144 Functional Loss - CCDC189 ENSG00000196118 CDS Human protein_coding chr16:30770350 chr16:30770348 nonsynonymous SNV 0.152 0 23 hm5C_associated_SNPs_89383 0 0 0 0 2 CCDC189 chr16:30770422 3'AG 30770422 Downstream 75bp
chr9 131260847 131260847 1 + G A SKCM 131260844 + 131260824 131260864 41 GGAGAGTGCCATTGAAGATGCGAGGAGGCAGGTCAGTCCCG GGAGAGTGCCATTGAAGATGCGAAGAGGCAGGTCAGTCCCG < 41bp 0.710534993293242 0.474446773250008 0.57878286 0.19009972 prediction 0.421069986586485 Functional Loss - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131260844 chr9:131260847 nonsynonymous SNV 0.922 0 24 hm5C_associated_SNPs_89384 0 0 1 0 1 ODF2 chr9:131260854 5'GT 131260854 Upstream 8bp
chrX 107301373 107301373 1 + G A GBM 107301370 + 107301350 107301390 41 CTACACCACCACTGTGGCCTCCCGAGAACAGCTTTCCATCC CTACACCACCACTGTGGCCTCCCAAGAACAGCTTTCCATCC < 41bp 0.80302104783255 0.592489185729451 0.34068567 0.27583408 prediction 0.421063724206197 Functional Loss - VSIG1 ENSG00000101842 CDS Human protein_coding chrX:107301370 chrX:107301373 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_89385 0 0 0 0 1 VSIG1 chrX:107301431 5'GT 107301431 Upstream 59bp
chr6 24403379 24403379 1 + C T STAD 24403377 + 24403357 24403397 41 ACGTGACCTCTGTGGGTCCTCCCGTTGCTGCCTGCGGCCGC ACGTGACCTCTGTGGGTCCTCCTGTTGCTGCCTGCGGCCGC < 41bp 0.780778076466487 0.57024709059315 0.28873825 0.26855958 prediction 0.421061971746673 Functional Loss - MRS2 ENSG00000124532 CDS Human protein_coding chr6:24403377 chr6:24403379 synonymous SNV . 0 23 hm5C_associated_SNPs_89386 0 0 1 0 1 MRS2 chr6:24403464 5'GT 24403464 Upstream 86bp
chr16 50664178 50664178 1 + C T PAAD 50664175 + 50664155 50664195 41 CCCCAACATCCAGCAAGATGCTGCGGGTAAAGCTCACCGTG CCCCAACATCCAGCAAGATGCTGTGGGTAAAGCTCACCGTG < 41bp 0.710528959231913 0.493189628580045 0.15078396 0.1553548 prediction 0.421057918463826 Functional Loss - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50664175 chr16:50664178 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_89390 0 0 1 0 2 NKD1 chr16:50664097 3'AG 50664097 Downstream 82bp
chr16 50664178 50664178 1 + C T PAAD 50664175 + 50664155 50664195 41 CCCCAACATCCAGCAAGATGCTGCGGGTAAAGCTCACCGTG CCCCAACATCCAGCAAGATGCTGTGGGTAAAGCTCACCGTG < 41bp 0.710528959231913 0.493189628580045 0.15078396 0.1553548 prediction 0.421057918463826 Functional Loss - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50664175 chr16:50664178 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_89390 0 0 1 0 2 NKD1 chr16:50664244 5'GT 50664244 Upstream 67bp
chr11 21251000 21251000 1 + G C LUAD 21250996 + 21250976 21251016 41 GTGGGGAACGGGACCATCTGCAGAGGTAGGCTTGCCGCCTT GTGGGGAACGGGACCATCTGCAGACGTAGGCTTGCCGCCTT < 41bp 0.710528058860924 0.479991598894737 0.90706086 0.86953497 prediction 0.421056117721849 Functional Loss - NELL1 ENSG00000165973 CDS Human protein_coding chr11:21250996 chr11:21251000 nonsynonymous SNV 0.985 4 25 hm5C_associated_SNPs_89391 0 0 0 0 1 NELL1 chr11:21251000 5'GT 21251000 Upstream 1bp
chr16 30958095 30958095 1 + C T OV 30958092 + 30958072 30958112 41 GGCTGCAGGGGGTGGCAGAACTGCGTCTGGCAGGTTTGGAG GGCTGCAGGGGGTGGCAGAACTGTGTCTGGCAGGTTTGGAG < 41bp 0.749844436304148 0.539320346344671 0.65464234 0.3970273 prediction 0.421048179918954 Functional Loss - FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30958092 chr16:30958095 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_89393 0 0 1 0 1 FBXL19 chr16:30958051 3'AG 30958051 Downstream 45bp
chr2 155555942 155555942 1 + C T UCEC 155555939 + 155555919 155555959 41 TTATGTTCCGGGTGGGCAACCTGCGCAACAGCCACATGGTC TTATGTTCCGGGTGGGCAACCTGTGCAACAGCCACATGGTC < 41bp 0.715211749862456 0.504689679294946 0.17545694 0.10741836 prediction 0.421044141135019 Functional Loss - KCNJ3 ENSG00000162989 CDS Human protein_coding chr2:155555939 chr2:155555942 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_89396 0 0 0 0 1 KCNJ3 chr2:155555989 5'GT 155555989 Upstream 48bp
chr19 49910167 49910167 1 + G A OV 49910164 + 49910144 49910184 41 ACGGGAAGCTGCTTGCCGAGCGGGATGGAGTGAAAAAGAGA ACGGGAAGCTGCTTGCCGAGCGGAATGGAGTGAAAAAGAGA < 41bp 0.815648945551822 0.605128048250892 0.5320418 0.4498042 prediction 0.421041794601861 Functional Loss - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49910164 chr19:49910167 nonsynonymous SNV 0.706 2 24 hm5C_associated_SNPs_89398 0 0 0 0 2 CCDC155 chr19:49910143 3'AG 49910143 Downstream 25bp
chr19 49910167 49910167 1 + G A OV 49910164 + 49910144 49910184 41 ACGGGAAGCTGCTTGCCGAGCGGGATGGAGTGAAAAAGAGA ACGGGAAGCTGCTTGCCGAGCGGAATGGAGTGAAAAAGAGA < 41bp 0.815648945551822 0.605128048250892 0.5320418 0.4498042 prediction 0.421041794601861 Functional Loss - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49910164 chr19:49910167 nonsynonymous SNV 0.706 2 24 hm5C_associated_SNPs_89398 0 0 0 0 2 CCDC155 chr19:49910220 5'GT 49910220 Upstream 54bp
chr14 42368155 42368155 1 + G A BLCA 42368152 + 42368132 42368172 41 CTAATGTTGACCAGATTGTCCAGGAAACACAGGTGAGATTC CTAATGTTGACCAGATTGTCCAGAAAACACAGGTGAGATTC < 41bp 0.72791834758131 0.51739753294201 0.68138385 0.23667812 prediction 0.421041629278601 Functional Loss - LRFN5 ENSG00000165379 CDS Human protein_coding chr14:42368152 chr14:42368155 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_89399 0 0 0 0 2 LRFN5 chr14:42368120 3'AG 42368120 Downstream 36bp
chr14 42368155 42368155 1 + G A BLCA 42368152 + 42368132 42368172 41 CTAATGTTGACCAGATTGTCCAGGAAACACAGGTGAGATTC CTAATGTTGACCAGATTGTCCAGAAAACACAGGTGAGATTC < 41bp 0.72791834758131 0.51739753294201 0.68138385 0.23667812 prediction 0.421041629278601 Functional Loss - LRFN5 ENSG00000165379 CDS Human protein_coding chr14:42368152 chr14:42368155 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_89399 0 0 0 0 2 LRFN5 chr14:42368163 5'GT 42368163 Upstream 9bp
chr1 1426050 1426050 1 + A C rs138009989 1426049 + 1426029 1426069 41 CTCAGCTGGCCGTGTCCTGGCAGGTGAGTCAGGCTCCGGCA CTCAGCTGGCCGTGTCCTGGCCGGTGAGTCAGGCTCCGGCA < 41bp 0.844011300607066 0.633493461153662 0.90864885 0.64023113 prediction 0.421035678906808 Functional Loss - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1426049 chr1:1426050 nonsynonymous SNV 0.120 5 22 hm5C_associated_SNPs_89401 0 0 1 0 1 ATAD3B chr1:1426051 5'GT 1426051 Upstream 2bp
chr20 49458396 49458396 1 + C T UCEC 49458393 + 49458373 49458413 41 ATGGGGCCTTCCCTCAGGCCCTGCGGAGGTGGCTGGGATCC ATGGGGCCTTCCCTCAGGCCCTGTGGAGGTGGCTGGGATCC < 41bp 0.7319784422112 0.521462797819423 0.3405285 0.3345449 prediction 0.421031288783555 Functional Loss - BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49458393 chr20:49458396 nonsynonymous SNV 0.097 1 24 hm5C_associated_SNPs_89403 0 0 1 0 2 BCAS4 chr20:49458303 3'AG 49458303 Downstream 94bp
chr20 49458396 49458396 1 + C T UCEC 49458393 + 49458373 49458413 41 ATGGGGCCTTCCCTCAGGCCCTGCGGAGGTGGCTGGGATCC ATGGGGCCTTCCCTCAGGCCCTGTGGAGGTGGCTGGGATCC < 41bp 0.7319784422112 0.521462797819423 0.3405285 0.3345449 prediction 0.421031288783555 Functional Loss - BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49458393 chr20:49458396 nonsynonymous SNV 0.097 1 24 hm5C_associated_SNPs_89403 0 0 1 0 2 BCAS4 chr20:49458437 5'GT 49458437 Upstream 42bp
chr21 36042977 36042977 1 + G C HNSC 36042976 + 36042956 36042996 41 CGAGGGTAGCGGCGAGGCCGCGCGCGTGAACGGCCGCCGGG CGAGGGTAGCGGCGAGGCCGCCCGCGTGAACGGCCGCCGGG < 41bp 0.88020289518852 0.669690379504853 0.8494216 0.68683517 prediction 0.421025031367333 Functional Loss - CLIC6 ENSG00000159212 CDS Human protein_coding chr21:36042976 chr21:36042977 synonymous SNV . 0 22 hm5C_associated_SNPs_89404 0 0 0 0 1 CLIC6 chr21:36043061 5'GT 36043061 Upstream 85bp
chr19 13136278 13136278 1 + G A SARC 13136275 + 13136255 13136295 41 CTCTACAAGTCGCCTCAGTGCTCGAACCCCGGCCTGTGCGT CTCTACAAGTCGCCTCAGTGCTCAAACCCCGGCCTGTGCGT < 41bp 0.710508663259566 0.455374071841257 0.41636968 0.2367346 prediction 0.421017326519132 Functional Loss - NFIX ENSG00000008441 CDS Human protein_coding chr19:13136275 chr19:13136278 synonymous SNV . 0 24 hm5C_associated_SNPs_89405 0 0 0 0 1 NFIX chr19:13136366 5'GT 13136366 Upstream 89bp
chr2 3750040 3750040 1 + G A READ 3750037 + 3750017 3750057 41 ACGCCAGGCTCACCATCGTCCCCGACGGGGGAGTGAGCCGC ACGCCAGGCTCACCATCGTCCCCAACGGGGGAGTGAGCCGC < 41bp 0.80132434914636 0.59081940485806 0.024885178 0.043780833 prediction 0.4210098885766 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3750037 chr2:3750040 nonsynonymous SNV 0.269 4 24 hm5C_associated_SNPs_89407 0 0 0 0 1 ALLC chr2:3749953 3'AG 3749953 Downstream 88bp
chr19 11557933 11557933 1 + C T rs201337319 11557930 + 11557910 11557950 41 CAGACAGACGCCACCTCTTTCTACGACCGCGTCTGGGCCGC CAGACAGACGCCACCTCTTTCTATGACCGCGTCTGGGCCGC < 41bp 0.750149691033046 0.53965080928522 0.69728494 0.5352503 prediction 0.420997763495651 Functional Loss - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11557930 chr19:11557933 synonymous SNV . 0 24 hm5C_associated_SNPs_89410 1 0 1 0 2 PRKCSH chr19:11557889 3'AG 11557889 Downstream 45bp
chr19 11557933 11557933 1 + C T rs201337319 11557930 + 11557910 11557950 41 CAGACAGACGCCACCTCTTTCTACGACCGCGTCTGGGCCGC CAGACAGACGCCACCTCTTTCTATGACCGCGTCTGGGCCGC < 41bp 0.750149691033046 0.53965080928522 0.69728494 0.5352503 prediction 0.420997763495651 Functional Loss - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11557930 chr19:11557933 synonymous SNV . 0 24 hm5C_associated_SNPs_89410 1 0 1 0 2 PRKCSH chr19:11557975 5'GT 11557975 Upstream 43bp
chr19 50215191 50215191 1 + C T HNSC 50215189 + 50215169 50215209 41 TGTACATCGTGTCCCGATTCCTCCACCTGCAGTCGCCCTTC TGTACATCGTGTCCCGATTCCTTCACCTGCAGTCGCCCTTC < 41bp 0.814610439720271 0.604113855784223 0.93212706 0.123545945 prediction 0.420993167872097 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50215189 chr19:50215191 synonymous SNV . 0 23 hm5C_associated_SNPs_89411 0 0 0 1 1 CPT1C chr19:50215218 5'GT 50215218 Upstream 28bp
chr19 14578766 14578766 1 + G A GBM 14578763 + 14578743 14578783 41 AGAAAGGGGACATTGTGGCCCGAGACGAGGTGGAGAGGTGG AGAAAGGGGACATTGTGGCCCGAAACGAGGTGGAGAGGTGG < 41bp 0.710494340218145 0.463599123319723 0.42650712 0.1632204 prediction 0.420988680436289 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14578763 chr19:14578766 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_89412 0 0 1 0 2 PKN1 chr19:14578688 3'AG 14578688 Downstream 79bp
chr19 14578766 14578766 1 + G A GBM 14578763 + 14578743 14578783 41 AGAAAGGGGACATTGTGGCCCGAGACGAGGTGGAGAGGTGG AGAAAGGGGACATTGTGGCCCGAAACGAGGTGGAGAGGTGG < 41bp 0.710494340218145 0.463599123319723 0.42650712 0.1632204 prediction 0.420988680436289 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14578763 chr19:14578766 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_89412 0 0 1 0 2 PKN1 chr19:14578779 5'GT 14578779 Upstream 14bp
chr1 207870916 207870916 1 + G A rs201832831 207870913 + 207870893 207870933 41 GGGACAAGGACAACTTTTCACCCGGGCAGGAAGTGTTCTAC GGGACAAGGACAACTTTTCACCCAGGCAGGAAGTGTTCTAC < 41bp 0.807863287652768 0.59737018843375 0.1797756 0.08417866 prediction 0.420986198438036 Functional Loss - CR1L ENSG00000197721 CDS Human protein_coding chr1:207870913 chr1:207870916 nonsynonymous SNV 0.004 3 24 hm5C_associated_SNPs_89413 0 0 0 3 1 CR1L chr1:207870848 3'AG 207870848 Downstream 69bp
chr9 72755185 72755185 1 + A T UCEC 72755181 + 72755161 72755201 41 AAAACCAAACATGTATCGGGCTGGAGACCACACTACAGGCT AAAACCAAACATGTATCGGGCTGGTGACCACACTACAGGCT < 41bp 0.710490665589298 0.37040916387925 0.32928157 0.24591294 prediction 0.420981331178596 Functional Loss - MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72755181 chr9:72755185 synonymous SNV . 0 25 hm5C_associated_SNPs_89417 0 0 0 1 1 MAMDC2 chr9:72755204 5'GT 72755204 Upstream 20bp
chr19 46206226 46206226 1 + C T KIRC 46206223 + 46206203 46206243 41 GTCTGGCACACCCCTGCGGACACCGAGGTCAATCTCCACCC GTCTGGCACACCCCTGCGGACACTGAGGTCAATCTCCACCC < 41bp 0.727386596662152 0.516906298196563 0.19115216 0.11101526 prediction 0.420960596931178 Functional Loss - QPCTL ENSG00000011478 CDS Human protein_coding chr19:46206223 chr19:46206226 synonymous SNV . 0 24 hm5C_associated_SNPs_89422 0 0 0 0 1 QPCTL chr19:46206162 3'AG 46206162 Downstream 65bp
chrX 147027072 147027072 1 + G A COAD 147027069 + 147027049 147027089 41 CATAGGAAACGACGATCACTCCCGAACAGATAATCGTCCAC CATAGGAAACGACGATCACTCCCAAACAGATAATCGTCCAC < 41bp 0.710478302121153 0.495497471261297 0.17076623 0.023809731 prediction 0.420956604242307 Functional Loss - FMR1 ENSG00000102081 CDS Human protein_coding chrX:147027069 chrX:147027072 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_89426 0 0 1 0 2 FMR1 chrX:147027054 3'AG 147027054 Downstream 19bp
chrX 147027072 147027072 1 + G A COAD 147027069 + 147027049 147027089 41 CATAGGAAACGACGATCACTCCCGAACAGATAATCGTCCAC CATAGGAAACGACGATCACTCCCAAACAGATAATCGTCCAC < 41bp 0.710478302121153 0.495497471261297 0.17076623 0.023809731 prediction 0.420956604242307 Functional Loss - FMR1 ENSG00000102081 CDS Human protein_coding chrX:147027069 chrX:147027072 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_89426 0 0 1 0 2 FMR1 chrX:147027136 5'GT 147027136 Upstream 65bp
chrX 147027071 147027071 1 + C T UCEC 147027069 + 147027049 147027089 41 CATAGGAAACGACGATCACTCCCGAACAGATAATCGTCCAC CATAGGAAACGACGATCACTCCTGAACAGATAATCGTCCAC < 41bp 0.710478302121153 0.425792769360161 0.17076623 0.13830501 prediction 0.420956604242307 Functional Loss - FMR1 ENSG00000102081 CDS Human protein_coding chrX:147027069 chrX:147027071 stopgain 1.000 1 23 hm5C_associated_SNPs_89427 0 0 1 0 2 FMR1 chrX:147027054 3'AG 147027054 Downstream 18bp
chrX 147027071 147027071 1 + C T UCEC 147027069 + 147027049 147027089 41 CATAGGAAACGACGATCACTCCCGAACAGATAATCGTCCAC CATAGGAAACGACGATCACTCCTGAACAGATAATCGTCCAC < 41bp 0.710478302121153 0.425792769360161 0.17076623 0.13830501 prediction 0.420956604242307 Functional Loss - FMR1 ENSG00000102081 CDS Human protein_coding chrX:147027069 chrX:147027071 stopgain 1.000 1 23 hm5C_associated_SNPs_89427 0 0 1 0 2 FMR1 chrX:147027136 5'GT 147027136 Upstream 66bp
chr12 4409047 4409047 1 + G A SKCM 4409044 + 4409024 4409064 41 AGGATTGTCTCAAAGCTTGCCAGGAGCAGATTGAGGCGGTG AGGATTGTCTCAAAGCTTGCCAGAAGCAGATTGAGGCGGTG < 41bp 0.775515538808456 0.565038726630804 0.8959337 0.8431996 prediction 0.420953624355302 Functional Loss - CCND2 ENSG00000118971 CDS Human protein_coding chr12:4409044 chr12:4409047 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_89429 0 0 1 0 1 CCND2 chr12:4409026 3'AG 4409026 Downstream 22bp
chr2 56411792 56411792 1 - T A rs549078505 56411796 - 56411776 56411816 41 GGAACAACTTTCCGCCGCCGCCGCAGCCGCCGCCGCGCCTC GGAACAACTTTCCGCCGCCGCCGCTGCCGCCGCCGCGCCTC < 41bp 0.878965273045755 0.668491970331042 0.2566095 0.2637127 prediction 0.420946605429426 Functional Loss - CCDC85A ENSG00000055813 CDS Human antisense chr2:56411796 chr2:56411792 synonymous SNV . 0 25 hm5C_associated_SNPs_89431 0 0 0 0 1 LOC100129434 chr2:56411759 5'GT 56411759 Upstream 34bp
chr5 43173495 43173495 1 + C T UCEC 43173492 + 43173472 43173512 41 CACTCTGAAATGTCACCTCACTGCATGCCAAACTGGAGTAG CACTCTGAAATGTCACCTCACTGTATGCCAAACTGGAGTAG < 41bp 0.710471749071211 0.484313492119444 0.10212615 0.09128159 prediction 0.420943498142421 Functional Loss - ZNF131 ENSG00000172262 CDS Human protein_coding chr5:43173492 chr5:43173495 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_89432 0 0 1 2 2 ZNF131 chr5:43173420 3'AG 43173420 Downstream 76bp
chr5 43173495 43173495 1 + C T UCEC 43173492 + 43173472 43173512 41 CACTCTGAAATGTCACCTCACTGCATGCCAAACTGGAGTAG CACTCTGAAATGTCACCTCACTGTATGCCAAACTGGAGTAG < 41bp 0.710471749071211 0.484313492119444 0.10212615 0.09128159 prediction 0.420943498142421 Functional Loss - ZNF131 ENSG00000172262 CDS Human protein_coding chr5:43173492 chr5:43173495 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_89432 0 0 1 2 2 ZNF131 chr5:43173550 5'GT 43173550 Upstream 56bp
chr12 56480402 56480402 1 + G C LUAD 56480401 + 56480381 56480421 41 GGAGGGACATCGTGAGGGACCGAGATGCTGAGATAGTGGTG GGAGGGACATCGTGAGGGACCCAGATGCTGAGATAGTGGTG < 41bp 0.71047087301193 0.407120632605468 0.53297615 0.3789166 prediction 0.42094174602386 Functional Loss - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56480401 chr12:56480402 nonsynonymous SNV 0.311 1 22 hm5C_associated_SNPs_89433 0 0 1 1 2 ERBB3 chr12:56480315 3'AG 56480315 Downstream 88bp
chr12 56480402 56480402 1 + G C LUAD 56480401 + 56480381 56480421 41 GGAGGGACATCGTGAGGGACCGAGATGCTGAGATAGTGGTG GGAGGGACATCGTGAGGGACCCAGATGCTGAGATAGTGGTG < 41bp 0.71047087301193 0.407120632605468 0.53297615 0.3789166 prediction 0.42094174602386 Functional Loss - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56480401 chr12:56480402 nonsynonymous SNV 0.311 1 22 hm5C_associated_SNPs_89433 0 0 1 1 2 ERBB3 chr12:56480440 5'GT 56480440 Upstream 39bp
chr12 56480404 56480404 1 + G A SKCM 56480401 + 56480381 56480421 41 GGAGGGACATCGTGAGGGACCGAGATGCTGAGATAGTGGTG GGAGGGACATCGTGAGGGACCGAAATGCTGAGATAGTGGTG < 41bp 0.71047087301193 0.47060299383413 0.53297615 0.19617155 prediction 0.42094174602386 Functional Loss - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56480401 chr12:56480404 nonsynonymous SNV 0.232 1 24 hm5C_associated_SNPs_89434 0 0 1 1 2 ERBB3 chr12:56480315 3'AG 56480315 Downstream 90bp
chr12 56480404 56480404 1 + G A SKCM 56480401 + 56480381 56480421 41 GGAGGGACATCGTGAGGGACCGAGATGCTGAGATAGTGGTG GGAGGGACATCGTGAGGGACCGAAATGCTGAGATAGTGGTG < 41bp 0.71047087301193 0.47060299383413 0.53297615 0.19617155 prediction 0.42094174602386 Functional Loss - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56480401 chr12:56480404 nonsynonymous SNV 0.232 1 24 hm5C_associated_SNPs_89434 0 0 1 1 2 ERBB3 chr12:56480440 5'GT 56480440 Upstream 37bp
chr17 26943955 26943955 1 - G A UCEC 26943958 - 26943938 26943978 41 CAGCTAGCTCTCCGCCTCTTCAGCAAAGTTCGGCCCCCTGT CAGCTAGCTCTCCGCCTCTTCAGTAAAGTTCGGCCCCCTGT < 41bp 0.743356477175871 0.532891497972142 0.091594815 0.079992205 prediction 0.420929958407459 Functional Loss - KIAA0100 ENSG00000007202 CDS Human protein_coding chr17:26943958 chr17:26943955 synonymous SNV . 0 24 hm5C_associated_SNPs_89436 0 0 1 0 2 KIAA0100 chr17:26943907 5'GT 26943907 Upstream 49bp
chr17 26943955 26943955 1 - G A UCEC 26943958 - 26943938 26943978 41 CAGCTAGCTCTCCGCCTCTTCAGCAAAGTTCGGCCCCCTGT CAGCTAGCTCTCCGCCTCTTCAGTAAAGTTCGGCCCCCTGT < 41bp 0.743356477175871 0.532891497972142 0.091594815 0.079992205 prediction 0.420929958407459 Functional Loss - KIAA0100 ENSG00000007202 CDS Human protein_coding chr17:26943958 chr17:26943955 synonymous SNV . 0 24 hm5C_associated_SNPs_89436 0 0 1 0 2 KIAA0100 chr17:26944017 3'AG 26944017 Downstream 63bp
chr3 111828423 111828423 1 + G A rs340167 111828420 + 111828400 111828440 41 TGTACAGTACATCGCCCTCTCTGGGTCGTTATTTTACTTCA TGTACAGTACATCGCCCTCTCTGAGTCGTTATTTTACTTCA < 41bp 0.710462139997809 0.471250714122972 0.8656781 0.39138046 prediction 0.420924279995618 Functional Loss - C3orf52 ENSG00000114529 CDS Human protein_coding chr3:111828420 chr3:111828423 nonsynonymous SNV 0.943 0 24 hm5C_associated_SNPs_89438 0 0 0 0 2 C3orf52 chr3:111828390 3'AG 111828390 Downstream 34bp
chr3 111828423 111828423 1 + G A rs340167 111828420 + 111828400 111828440 41 TGTACAGTACATCGCCCTCTCTGGGTCGTTATTTTACTTCA TGTACAGTACATCGCCCTCTCTGAGTCGTTATTTTACTTCA < 41bp 0.710462139997809 0.471250714122972 0.8656781 0.39138046 prediction 0.420924279995618 Functional Loss - C3orf52 ENSG00000114529 CDS Human protein_coding chr3:111828420 chr3:111828423 nonsynonymous SNV 0.943 0 24 hm5C_associated_SNPs_89438 0 0 0 0 2 C3orf52 chr3:111828460 5'GT 111828460 Upstream 38bp
chr19 3735583 3735583 1 + C T HNSC 3735580 + 3735560 3735600 41 CCAGGGAGAGTCCCCGGCTTCGGCGGGAAAGTTCAGTAGAT CCAGGGAGAGTCCCCGGCTTCGGTGGGAAAGTTCAGTAGAT < 41bp 0.714682538227953 0.504222656105556 0.8982315 0.83361626 prediction 0.420919764244795 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3735580 chr19:3735583 nonsynonymous SNV 0.011 3 24 hm5C_associated_SNPs_89440 0 0 0 0 2 TJP3 chr19:3735564 3'AG 3735564 Downstream 20bp
chr19 3735583 3735583 1 + C T HNSC 3735580 + 3735560 3735600 41 CCAGGGAGAGTCCCCGGCTTCGGCGGGAAAGTTCAGTAGAT CCAGGGAGAGTCCCCGGCTTCGGTGGGAAAGTTCAGTAGAT < 41bp 0.714682538227953 0.504222656105556 0.8982315 0.83361626 prediction 0.420919764244795 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3735580 chr19:3735583 nonsynonymous SNV 0.011 3 24 hm5C_associated_SNPs_89440 0 0 0 0 2 TJP3 chr19:3735637 5'GT 3735637 Upstream 55bp
chr2 27505700 27505700 1 + C T SKCM 27505698 + 27505678 27505718 41 CCCATCTGCCTGGAGATGTTCTCCAAACCAGTGGTGATCCT CCCATCTGCCTGGAGATGTTCTTCAAACCAGTGGTGATCCT < 41bp 0.710458653690604 0.418470036225591 0.96467376 0.42384547 prediction 0.420917307381208 Functional Loss - TRIM54 ENSG00000138100 CDS Human protein_coding chr2:27505698 chr2:27505700 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_89441 0 0 0 0 1 TRIM54 chr2:27505767 5'GT 27505767 Upstream 68bp
chr10 119017345 119017345 1 + G T LUAD 119017343 + 119017323 119017363 41 CAAACATGGGCATCGCCATGCTGGAGCCAGCCCTGCCCATC CAAACATGGGCATCGCCATGCTTGAGCCAGCCCTGCCCATC < 41bp 0.92017811185545 0.709723232249319 0.3406821 0.033543646 prediction 0.420909759212261 Functional Loss - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119017343 chr10:119017345 synonymous SNV . 0 23 hm5C_associated_SNPs_89444 0 0 0 0 2 SLC18A2 chr10:119017308 3'AG 119017308 Downstream 38bp
chr10 119017345 119017345 1 + G T LUAD 119017343 + 119017323 119017363 41 CAAACATGGGCATCGCCATGCTGGAGCCAGCCCTGCCCATC CAAACATGGGCATCGCCATGCTTGAGCCAGCCCTGCCCATC < 41bp 0.92017811185545 0.709723232249319 0.3406821 0.033543646 prediction 0.420909759212261 Functional Loss - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119017343 chr10:119017345 synonymous SNV . 0 23 hm5C_associated_SNPs_89444 0 0 0 0 2 SLC18A2 chr10:119017403 5'GT 119017403 Upstream 59bp
chr2 219501065 219501065 1 + G A UCEC 219501062 + 219501042 219501082 41 AATGGATTATGACTGGAAATCCCGAAATGACTTTATTGGTC AATGGATTATGACTGGAAATCCCAAAATGACTTTATTGGTC < 41bp 0.710454327786728 0.473036996166827 0.2537012 0.16209945 prediction 0.420908655573456 Functional Loss - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219501062 chr2:219501065 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_89445 0 0 0 0 2 PLCD4 chr2:219500966 3'AG 219500966 Downstream 100bp
chr2 219501065 219501065 1 + G A UCEC 219501062 + 219501042 219501082 41 AATGGATTATGACTGGAAATCCCGAAATGACTTTATTGGTC AATGGATTATGACTGGAAATCCCAAAATGACTTTATTGGTC < 41bp 0.710454327786728 0.473036996166827 0.2537012 0.16209945 prediction 0.420908655573456 Functional Loss - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219501062 chr2:219501065 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_89445 0 0 0 0 2 PLCD4 chr2:219501115 5'GT 219501115 Upstream 51bp
chr12 7050155 7050155 1 + C T UCEC 7050153 + 7050133 7050173 41 CCCTGCTTCCTCACCCTCTGCACGAGAACGAAGTTCTTCGT CCCTGCTTCCTCACCCTCTGCATGAGAACGAAGTTCTTCGT < 41bp 0.710452858627028 0.420737529766336 0.23060459 0.121142656 prediction 0.420905717254056 Functional Loss - ATN1 ENSG00000111676 CDS Human protein_coding chr12:7050153 chr12:7050155 synonymous SNV . 0 23 hm5C_associated_SNPs_89446 0 0 1 0 1 ATN1 chr12:7050186 5'GT 7050186 Upstream 32bp
chr12 52379059 52379059 1 + G A COAD 52379056 + 52379036 52379076 41 GCATGTGTGCCATAGCAGACCTGGGCCTGGCTGTCCGTCAT GCATGTGTGCCATAGCAGACCTGAGCCTGGCTGTCCGTCAT < 41bp 0.793434200608699 0.582982587327508 0.39408922 0.18074724 prediction 0.420903226562383 Functional Loss - ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52379056 chr12:52379059 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_89447 0 0 1 0 2 ACVR1B chr12:52378976 3'AG 52378976 Downstream 84bp
chr12 52379059 52379059 1 + G A COAD 52379056 + 52379036 52379076 41 GCATGTGTGCCATAGCAGACCTGGGCCTGGCTGTCCGTCAT GCATGTGTGCCATAGCAGACCTGAGCCTGGCTGTCCGTCAT < 41bp 0.793434200608699 0.582982587327508 0.39408922 0.18074724 prediction 0.420903226562383 Functional Loss - ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52379056 chr12:52379059 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_89447 0 0 1 0 2 ACVR1B chr12:52379132 5'GT 52379132 Upstream 74bp
chr4 72994359 72994359 1 + G A SKCM 72994356 + 72994336 72994376 41 TCAGAAAACTGGCATCCCATCTGGAATGTCAATGACACAAA TCAGAAAACTGGCATCCCATCTGAAATGTCAATGACACAAA < 41bp 0.785531289953094 0.575080900382978 0.19371587 0.035669833 prediction 0.420900779140233 Functional Loss - NPFFR2 ENSG00000056291 CDS Human protein_coding chr4:72994356 chr4:72994359 stopgain 0.960 0 24 hm5C_associated_SNPs_89448 0 0 0 0 1 NPFFR2 chr4:72994302 3'AG 72994302 Downstream 58bp
chrX 69644851 69644851 1 + G T LUSC 69644847 + 69644827 69644867 41 CCTTCACCATGGCCGAGTCCCCCGGCTGCTGCTCCGTCTGG CCTTCACCATGGCCGAGTCCCCCGTCTGCTGCTCCGTCTGG < 41bp 0.728556806159766 0.51810976543158 0.14521673 0.045206487 prediction 0.420894081456372 Functional Loss - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69644847 chrX:69644851 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_89451 0 0 0 0 2 GDPD2 chrX:69644826 3'AG 69644826 Downstream 26bp
chrX 69644851 69644851 1 + G T LUSC 69644847 + 69644827 69644867 41 CCTTCACCATGGCCGAGTCCCCCGGCTGCTGCTCCGTCTGG CCTTCACCATGGCCGAGTCCCCCGTCTGCTGCTCCGTCTGG < 41bp 0.728556806159766 0.51810976543158 0.14521673 0.045206487 prediction 0.420894081456372 Functional Loss - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69644847 chrX:69644851 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_89451 0 0 0 0 2 GDPD2 chrX:69644939 5'GT 69644939 Upstream 89bp
chr7 106509951 106509951 1 + G A SKCM 106509948 + 106509928 106509968 41 GAGCCATTGCAGTTCAGAAACTGGAGAGCTTGGAGGACGAT GAGCCATTGCAGTTCAGAAACTGAAGAGCTTGGAGGACGAT < 41bp 0.786385210222828 0.575938267751767 0.4005856 0.41163266 prediction 0.420893884942122 Functional Loss - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106509948 chr7:106509951 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_89452 0 0 1 0 1 PIK3CG chr7:106510001 5'GT 106510001 Upstream 51bp
chr20 42271136 42271136 1 + G A LUSC 42271133 + 42271113 42271153 41 TCTTAGGTACTGAAGAAGACCTGGAATTTTATGTCAGGAAG TCTTAGGTACTGAAGAAGACCTGAAATTTTATGTCAGGAAG < 41bp 0.729896396944438 0.519449818717558 0.27369586 0.38061523 prediction 0.42089315645376 Functional Loss - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42271133 chr20:42271136 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_89453 0 0 1 0 1 IFT52 chr20:42271119 3'AG 42271119 Downstream 18bp
chr12 9985995 9985995 1 + G T LUSC 9985992 + 9985972 9986012 41 TCTAAAAGTGAATAATGGCACAAGAAGAAATATAAGTAATA TCTAAAAGTGAATAATGGCACAATAAGAAATATAAGTAATA < 41bp 0.710446181979654 0.345562744136241 0.078213125 0.051047176 prediction 0.420892363959308 Functional Loss - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9985992 chr12:9985995 nonsynonymous SNV 0.734 2 24 hm5C_associated_SNPs_89454 0 0 0 1 2 KLRF1 chr12:9985899 3'AG 9985899 Downstream 97bp
chr12 9985995 9985995 1 + G T LUSC 9985992 + 9985972 9986012 41 TCTAAAAGTGAATAATGGCACAAGAAGAAATATAAGTAATA TCTAAAAGTGAATAATGGCACAATAAGAAATATAAGTAATA < 41bp 0.710446181979654 0.345562744136241 0.078213125 0.051047176 prediction 0.420892363959308 Functional Loss - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9985992 chr12:9985995 nonsynonymous SNV 0.734 2 24 hm5C_associated_SNPs_89454 0 0 0 1 2 KLRF1 chr12:9986048 5'GT 9986048 Upstream 54bp
chr12 9985996 9985996 1 + A C UCEC 9985992 + 9985972 9986012 41 TCTAAAAGTGAATAATGGCACAAGAAGAAATATAAGTAATA TCTAAAAGTGAATAATGGCACAAGCAGAAATATAAGTAATA < 41bp 0.710446181979654 0.323951906856429 0.078213125 0.016836643 prediction 0.420892363959308 Functional Loss - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9985992 chr12:9985996 nonsynonymous SNV 0.684 1 25 hm5C_associated_SNPs_89455 0 0 0 0 2 KLRF1 chr12:9985899 3'AG 9985899 Downstream 98bp
chr12 9985996 9985996 1 + A C UCEC 9985992 + 9985972 9986012 41 TCTAAAAGTGAATAATGGCACAAGAAGAAATATAAGTAATA TCTAAAAGTGAATAATGGCACAAGCAGAAATATAAGTAATA < 41bp 0.710446181979654 0.323951906856429 0.078213125 0.016836643 prediction 0.420892363959308 Functional Loss - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9985992 chr12:9985996 nonsynonymous SNV 0.684 1 25 hm5C_associated_SNPs_89455 0 0 0 0 2 KLRF1 chr12:9986048 5'GT 9986048 Upstream 53bp
chr1 48699341 48699341 1 + G T LUAD 48699337 + 48699317 48699357 41 TCTTCCACAGACGAGGTGGGCTGCGTGGACCCTGATGTCTG TCTTCCACAGACGAGGTGGGCTGCTTGGACCCTGATGTCTG < 41bp 0.716575218935772 0.506130052874776 0.4062654 0.367323 prediction 0.420890332121992 Functional Loss - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48699337 chr1:48699341 nonsynonymous SNV 0.818 5 25 hm5C_associated_SNPs_89456 0 0 1 1 2 SLC5A9 chr1:48699327 3'AG 48699327 Downstream 15bp
chr1 48699341 48699341 1 + G T LUAD 48699337 + 48699317 48699357 41 TCTTCCACAGACGAGGTGGGCTGCGTGGACCCTGATGTCTG TCTTCCACAGACGAGGTGGGCTGCTTGGACCCTGATGTCTG < 41bp 0.716575218935772 0.506130052874776 0.4062654 0.367323 prediction 0.420890332121992 Functional Loss - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48699337 chr1:48699341 nonsynonymous SNV 0.818 5 25 hm5C_associated_SNPs_89456 0 0 1 1 2 SLC5A9 chr1:48699434 5'GT 48699434 Upstream 94bp
chr1 197890485 197890485 1 + G A SKCM 197890482 + 197890462 197890502 41 TGCCACCTTGGCATTTCCGCCTCGGAGATGGTCATGCGCGC TGCCACCTTGGCATTTCCGCCTCAGAGATGGTCATGCGCGC < 41bp 0.791536405357371 0.58109363552122 0.31064808 0.14899996 prediction 0.420885539672301 Functional Loss - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197890482 chr1:197890485 synonymous SNV . 0 24 hm5C_associated_SNPs_89457 0 0 0 0 1 LHX9 chr1:197890434 3'AG 197890434 Downstream 52bp
chr11 126283429 126283429 1 + G A COAD 126283426 + 126283406 126283446 41 ACCACGGGCCTGTTGGCCATCACGCTGGCCCTCCACCTCTG ACCACGGGCCTGTTGGCCATCACACTGGCCCTCCACCTCTG < 41bp 0.815289182290441 0.604847818796728 0.29621857 0.4776686 prediction 0.420882726987424 Functional Loss - ST3GAL4 ENSG00000110080 CDS Human protein_coding chr11:126283426 chr11:126283429 synonymous SNV . 0 24 hm5C_associated_SNPs_89458 0 0 1 0 1 ST3GAL4 chr11:126283400 3'AG 126283400 Downstream 30bp
chr1 160722922 160722922 1 + G A UCEC 160722919 + 160722899 160722939 41 GAAAATCCCCACTCACTGCTCACGATGCCAGACACACCAAG GAAAATCCCCACTCACTGCTCACAATGCCAGACACACCAAG < 41bp 0.781892720813023 0.571451924126072 0.20731512 0.057727844 prediction 0.420881593373901 Functional Loss - SLAMF7 ENSG00000026751 CDS Human protein_coding chr1:160722919 chr1:160722922 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_89459 0 0 0 0 1 SLAMF7 chr1:160722896 3'AG 160722896 Downstream 27bp
chr8 2046731 2046731 1 + C T rs142781583 2046728 + 2046708 2046748 41 TCACTCTACGAGTTCAAAATCGCCGCCGTCAACCTGGCCGG TCACTCTACGAGTTCAAAATCGCTGCCGTCAACCTGGCCGG < 41bp 0.72597165749469 0.515531068903757 0.88048995 0.6820002 prediction 0.420881177181866 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2046728 chr8:2046731 synonymous SNV . 0 24 hm5C_associated_SNPs_89460 0 0 0 0 2 MYOM2 chr8:2046687 3'AG 2046687 Downstream 45bp
chr8 2046731 2046731 1 + C T rs142781583 2046728 + 2046708 2046748 41 TCACTCTACGAGTTCAAAATCGCCGCCGTCAACCTGGCCGG TCACTCTACGAGTTCAAAATCGCTGCCGTCAACCTGGCCGG < 41bp 0.72597165749469 0.515531068903757 0.88048995 0.6820002 prediction 0.420881177181866 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2046728 chr8:2046731 synonymous SNV . 0 24 hm5C_associated_SNPs_89460 0 0 0 0 2 MYOM2 chr8:2046813 5'GT 2046813 Upstream 83bp
chr2 88826013 88826013 1 + G A LUSC 88826010 + 88825990 88826030 41 AATACTCCAGGGTCACGCCGCAAGAGGTAGGAAGGCACGCA AATACTCCAGGGTCACGCCGCAAAAGGTAGGAAGGCACGCA < 41bp 0.808505976387499 0.59806557395324 0.3285793 0.103496075 prediction 0.420880804868517 Functional Loss - TEX37 ENSG00000172073 CDS Human protein_coding chr2:88826010 chr2:88826013 nonsynonymous SNV 0.797 2 24 hm5C_associated_SNPs_89461 0 0 0 0 2 TEX37 chr2:88825923 3'AG 88825923 Downstream 91bp
chr2 88826013 88826013 1 + G A LUSC 88826010 + 88825990 88826030 41 AATACTCCAGGGTCACGCCGCAAGAGGTAGGAAGGCACGCA AATACTCCAGGGTCACGCCGCAAAAGGTAGGAAGGCACGCA < 41bp 0.808505976387499 0.59806557395324 0.3285793 0.103496075 prediction 0.420880804868517 Functional Loss - TEX37 ENSG00000172073 CDS Human protein_coding chr2:88826010 chr2:88826013 nonsynonymous SNV 0.797 2 24 hm5C_associated_SNPs_89461 0 0 0 0 2 TEX37 chr2:88826015 5'GT 88826015 Upstream 3bp
chr21 43710303 43710303 1 + G A rs61735842 43710300 + 43710280 43710320 41 TCCATGCTGTTCCTCATGTTCGCGGCCCTCATGCCTACTGT TCCATGCTGTTCCTCATGTTCGCAGCCCTCATGCCTACTGT < 41bp 0.821371557312308 0.610931886773709 0.7287799 0.4158824 prediction 0.420879341077198 Functional Loss - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43710300 chr21:43710303 synonymous SNV . 0 24 hm5C_associated_SNPs_89462 0 0 0 0 1 ABCG1 chr21:43710328 5'GT 43710328 Upstream 26bp
chr19 41082842 41082842 1 + A C rs544781931 41082838 + 41082818 41082858 41 GCTACTGCAGCCGAGGGGGTCCCCAGTCGGGGGCCTCCCGG GCTACTGCAGCCGAGGGGGTCCCCCGTCGGGGGCCTCCCGG < 41bp 0.710435404105618 0.308393871623453 0.72153145 0.21778154 prediction 0.420870808211236 Functional Loss - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41082838 chr19:41082842 nonsynonymous SNV 0.157 0 25 hm5C_associated_SNPs_89467 0 0 1 0 1 SHKBP1 chr19:41082891 5'GT 41082891 Upstream 50bp
chrX 26211978 26211978 1 + C T STAD 26211976 + 26211956 26211996 41 CAGCCATCATGCCTCGGGGTCACAAGAGTAAGCTCCGTACC CAGCCATCATGCCTCGGGGTCATAAGAGTAAGCTCCGTACC < 41bp 0.81087026576804 0.600435313985394 0.45631966 0.55446464 prediction 0.420869903565292 Functional Loss - MAGEB6 ENSG00000176746 CDS Human protein_coding chrX:26211976 chrX:26211978 synonymous SNV . 0 23 hm5C_associated_SNPs_89469 0 0 0 0 1 MAGEB6 chrX:26211903 3'AG 26211903 Downstream 76bp
chr17 42255643 42255643 1 + G A SKCM 42255640 + 42255620 42255660 41 AAGGCAGCTGCAGCACCTGGCCCGACTAGCTGTGCGCGCTC AAGGCAGCTGCAGCACCTGGCCCAACTAGCTGTGCGCGCTC < 41bp 0.710427208516854 0.465024220260701 0.09360039 0.037426084 prediction 0.420854417033708 Functional Loss - ASB16 ENSG00000161664 CDS Human protein_coding chr17:42255640 chr17:42255643 nonsynonymous SNV 0.218 3 24 hm5C_associated_SNPs_89473 0 0 0 0 1 ASB16 chr17:42255573 3'AG 42255573 Downstream 71bp
chr1 150463975 150463975 1 + C T SKCM 150463973 + 150463953 150463993 41 AGGCTTCACGGGATCAGCTTCGCCAGTTGTTCAAGGTGGGG AGGCTTCACGGGATCAGCTTCGTCAGTTGTTCAAGGTGGGG < 41bp 0.710419195009362 0.42671615571988 0.15472424 0.16427463 prediction 0.420838390018724 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150463973 chr1:150463975 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_89479 0 0 1 0 1 TARS2 chr1:150463987 5'GT 150463987 Upstream 13bp
chr1 150463976 150463976 1 + C T SKCM 150463973 + 150463953 150463993 41 AGGCTTCACGGGATCAGCTTCGCCAGTTGTTCAAGGTGGGG AGGCTTCACGGGATCAGCTTCGCTAGTTGTTCAAGGTGGGG < 41bp 0.710419195009362 0.485683406921143 0.15472424 0.25630346 prediction 0.420838390018724 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150463973 chr1:150463976 stopgain 0.966 0 24 hm5C_associated_SNPs_89480 0 0 1 0 1 TARS2 chr1:150463987 5'GT 150463987 Upstream 12bp
chr3 13613065 13613065 1 + G T COAD 13613062 + 13613042 13613082 41 CAGCCTGGATCCCACCCACCCGAGAAGTGCCCAGGAAGCCG CAGCCTGGATCCCACCCACCCGATAAGTGCCCAGGAAGCCG < 41bp 0.71041008076776 0.311348322185082 0.64691633 0.20921224 prediction 0.42082016153552 Functional Loss - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13613062 chr3:13613065 stopgain 0.004 0 24 hm5C_associated_SNPs_89489 0 0 0 0 1 FBLN2 chr3:13613161 5'GT 13613161 Upstream 97bp
chr3 169498526 169498526 1 + G A UCEC 169498523 + 169498503 169498543 41 TTTGCAACTTCTAGCAATCTCAAGATTCATGCAAGGTAAAA TTTGCAACTTCTAGCAATCTCAAAATTCATGCAAGGTAAAA < 41bp 0.746215769084677 0.535805872387552 0.23535901 0.19401813 prediction 0.42081979339425 Functional Loss - MYNN ENSG00000085274 CDS Human protein_coding chr3:169498523 chr3:169498526 synonymous SNV . 0 24 hm5C_associated_SNPs_89490 0 0 1 0 1 MYNN chr3:169498537 5'GT 169498537 Upstream 12bp
chr19 57839161 57839161 1 + G A ESCA 57839158 + 57839138 57839178 41 TACTCCAGGAACAACTGACACAAGGAGCCTCAAAGAACTCC TACTCCAGGAACAACTGACACAAAGAGCCTCAAAGAACTCC < 41bp 0.788478841234992 0.578069000037843 0.046358734 0.040593266 prediction 0.420819682394298 Functional Loss - ZNF543 ENSG00000178229 CDS Human protein_coding chr19:57839158 chr19:57839161 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_89491 0 0 0 0 1 ZNF543 chr19:57839072 3'AG 57839072 Downstream 90bp
chr14 59961848 59961848 1 + G T UCEC 59961845 + 59961825 59961865 41 TTCTTTATATTCGTTCATGTCGAGTATTGATGCTTTCTGAC TTCTTTATATTCGTTCATGTCGATTATTGATGCTTTCTGAC < 41bp 0.710408377259014 0.323900592931551 0.22090906 0.083789766 prediction 0.420816754518028 Functional Loss - JKAMP ENSG00000050130 CDS Human protein_coding chr14:59961845 chr14:59961848 nonsynonymous SNV 0.355 2 24 hm5C_associated_SNPs_89493 0 0 1 0 1 JKAMP chr14:59961942 5'GT 59961942 Upstream 95bp
chr19 52817532 52817532 1 + G T LUAD 52817529 + 52817509 52817549 41 ACTACAGGAACCTGGTCTCCCTGGGTGAGGATCATGCCCCT ACTACAGGAACCTGGTCTCCCTGTGTGAGGATCATGCCCCT < 41bp 0.928765969918773 0.718357966575966 0.83034194 0.116280645 prediction 0.420816006685615 Functional Loss - ZNF480 ENSG00000198464 CDS Human protein_coding chr19:52817529 chr19:52817532 stopgain 0.992 2 24 hm5C_associated_SNPs_89494 0 0 1 0 1 ZNF480 chr19:52817532 5'GT 52817532 Upstream 1bp
chr19 52954492 52954492 1 + C T DLBC 52954490 + 52954470 52954510 41 TCTTCAGGGTGGAAGCCTGGCGCGCGTCCGGAGGTGCTGAG TCTTCAGGGTGGAAGCCTGGCGTGCGTCCGGAGGTGCTGAG < 41bp 0.788811032640907 0.578404907249494 0.22546339 0.1513088 prediction 0.420812250782826 Functional Loss - ZNF534 ENSG00000198633 CDS Human protein_coding chr19:52954490 chr19:52954492 synonymous SNV . 0 23 hm5C_associated_SNPs_89497 0 0 0 0 1 ZNF534 chr19:52954440 3'AG 52954440 Downstream 53bp
chr4 25667891 25667891 1 + C T SKCM 25667888 + 25667868 25667908 41 CGTTGTCAGCATGGTGTCCTCTTCATGTGAGTCGGGGCACC CGTTGTCAGCATGGTGTCCTCTTTATGTGAGTCGGGGCACC < 41bp 0.710405674759402 0.483900098860338 0.49959138 0.21498623 prediction 0.420811349518803 Functional Loss - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25667888 chr4:25667891 nonsynonymous SNV 0.310 4 24 hm5C_associated_SNPs_89500 0 0 0 0 1 SLC34A2 chr4:25667893 5'GT 25667893 Upstream 3bp
chr3 69151154 69151154 1 + C T LUSC 69151152 + 69151132 69151172 41 TTGGCGAGCTATTTCCTTATCTCCATGTTTGGAGGAGTCAT TTGGCGAGCTATTTCCTTATCTTCATGTTTGGAGGAGTCAT < 41bp 0.874641988158263 0.664236953859682 0.93912065 0.38305956 prediction 0.420810068597163 Functional Loss - ARL6IP5 ENSG00000144746 CDS Human protein_coding chr3:69151152 chr3:69151154 nonsynonymous SNV 0.953 3 23 hm5C_associated_SNPs_89501 0 0 1 0 1 ARL6IP5 chr3:69151207 5'GT 69151207 Upstream 54bp
chr7 39446255 39446255 1 + C T KIRP 39446252 + 39446232 39446272 41 GCGGCTGCAGCAGCCATGAGCTCCATAGCAAGCTCACAGGC GCGGCTGCAGCAGCCATGAGCTCTATAGCAAGCTCACAGGC < 41bp 0.733489502296304 0.523086483279038 0.82051456 0.80308986 prediction 0.420806038034531 Functional Loss - POU6F2 ENSG00000106536 CDS Human protein_coding chr7:39446252 chr7:39446255 synonymous SNV . 0 24 hm5C_associated_SNPs_89503 0 0 0 0 2 POU6F2 chr7:39446199 3'AG 39446199 Downstream 57bp
chr7 39446255 39446255 1 + C T KIRP 39446252 + 39446232 39446272 41 GCGGCTGCAGCAGCCATGAGCTCCATAGCAAGCTCACAGGC GCGGCTGCAGCAGCCATGAGCTCTATAGCAAGCTCACAGGC < 41bp 0.733489502296304 0.523086483279038 0.82051456 0.80308986 prediction 0.420806038034531 Functional Loss - POU6F2 ENSG00000106536 CDS Human protein_coding chr7:39446252 chr7:39446255 synonymous SNV . 0 24 hm5C_associated_SNPs_89503 0 0 0 0 2 POU6F2 chr7:39446339 5'GT 39446339 Upstream 85bp
chr5 172068421 172068421 1 + G A rs535463158 172068418 + 172068398 172068438 41 CCCGACGCAGCGATGGGCAACACGGTGCACCGGACCCTGCC CCCGACGCAGCGATGGGCAACACAGTGCACCGGACCCTGCC < 41bp 0.787659901181659 0.577258181560455 0.6059109 0.5326671 prediction 0.420803439242408 Functional Loss - NEURL1B ENSG00000214357 CDS Human protein_coding chr5:172068418 chr5:172068421 synonymous SNV . 0 24 hm5C_associated_SNPs_89505 0 0 0 0 1 NEURL1B chr5:172068440 5'GT 172068440 Upstream 20bp
chr8 1624744 1624744 1 + G T SKCM 1624741 + 1624721 1624761 41 ACACGGAGAGCCGCGGTCTGCGGGAATACCACTCTGTCGGG ACACGGAGAGCCGCGGTCTGCGGTAATACCACTCTGTCGGG < 41bp 0.934591194167759 0.724190821292031 0.91586363 0.5725044 prediction 0.420800745751457 Functional Loss - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1624741 chr8:1624744 stopgain 0.990 1 24 hm5C_associated_SNPs_89506 0 0 0 0 2 DLGAP2 chr8:1624699 3'AG 1624699 Downstream 46bp
chr8 1624744 1624744 1 + G T SKCM 1624741 + 1624721 1624761 41 ACACGGAGAGCCGCGGTCTGCGGGAATACCACTCTGTCGGG ACACGGAGAGCCGCGGTCTGCGGTAATACCACTCTGTCGGG < 41bp 0.934591194167759 0.724190821292031 0.91586363 0.5725044 prediction 0.420800745751457 Functional Loss - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1624741 chr8:1624744 stopgain 0.990 1 24 hm5C_associated_SNPs_89506 0 0 0 0 2 DLGAP2 chr8:1624784 5'GT 1624784 Upstream 41bp
chr11 65744159 65744159 1 + C T KICH 65744156 + 65744136 65744176 41 CGGGATGAGGAGCGCTCAGCCAACGGTGGCTCCGAATCTGA CGGGATGAGGAGCGCTCAGCCAATGGTGGCTCCGAATCTGA < 41bp 0.731903443299398 0.521503383981293 0.5163105 0.37437385 prediction 0.420800118636209 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65744156 chr11:65744159 synonymous SNV . 0 24 hm5C_associated_SNPs_89507 0 0 1 0 2 SART1 chr11:65744127 3'AG 65744127 Downstream 33bp
chr11 65744159 65744159 1 + C T KICH 65744156 + 65744136 65744176 41 CGGGATGAGGAGCGCTCAGCCAACGGTGGCTCCGAATCTGA CGGGATGAGGAGCGCTCAGCCAATGGTGGCTCCGAATCTGA < 41bp 0.731903443299398 0.521503383981293 0.5163105 0.37437385 prediction 0.420800118636209 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65744156 chr11:65744159 synonymous SNV . 0 24 hm5C_associated_SNPs_89507 0 0 1 0 2 SART1 chr11:65744237 5'GT 65744237 Upstream 79bp
chr4 95539205 95539205 1 + G A STAD 95539202 + 95539182 95539222 41 GGCTTCCTCGGTAGCTTCCACACGGAGCATGCCCGAGAGCC GGCTTCCTCGGTAGCTTCCACACAGAGCATGCCCGAGAGCC < 41bp 0.798818809153922 0.588425677762324 0.14852348 0.019375265 prediction 0.420786262783198 Functional Loss - PDLIM5 ENSG00000163110 CDS Human protein_coding chr4:95539202 chr4:95539205 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_89510 0 0 1 0 1 PDLIM5 chr4:95539155 3'AG 95539155 Downstream 51bp
chr11 124747920 124747920 1 + C T LUSC 124747917 + 124747897 124747937 41 TGTCTATAGCACCATTGACCCAGCGGGGGAGGAGCTGCAGA TGTCTATAGCACCATTGACCCAGTGGGGGAGGAGCTGCAGA < 41bp 0.726139121597014 0.515747738854493 0.88095766 0.7578579 prediction 0.420782765485041 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747917 chr11:124747920 nonsynonymous SNV 0.952 0 24 hm5C_associated_SNPs_89513 0 0 0 0 1 ROBO3 chr11:124747833 3'AG 124747833 Downstream 88bp
chr5 52778794 52778794 1 + G T LUAD 52778792 + 52778772 52778812 41 CTGAGCAAGGAGGAGTGCTGCAGCACCGGCCGGCTGAGCAC CTGAGCAAGGAGGAGTGCTGCATCACCGGCCGGCTGAGCAC < 41bp 0.905353388347263 0.69496323781957 0.41141254 0.12246376 prediction 0.420780301055386 Functional Loss - FST ENSG00000134363 CDS Human protein_coding chr5:52778792 chr5:52778794 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_89514 0 0 1 0 1 FST chr5:52778710 3'AG 52778710 Downstream 85bp
chr19 13060211 13060211 1 + C T BLCA 13060209 + 13060189 13060229 41 GCAGCTGGGCCAGGAGAACCCTCAGCTTTTACAGGTGTGGT GCAGCTGGGCCAGGAGAACCCTTAGCTTTTACAGGTGTGGT < 41bp 0.710389123348333 0.437549398932311 0.2081821 0.17747205 prediction 0.420778246696666 Functional Loss - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13060209 chr19:13060211 stopgain 1.000 0 23 hm5C_associated_SNPs_89515 0 0 1 0 1 RAD23A chr19:13060222 5'GT 13060222 Upstream 12bp
chr14 93299614 93299614 1 + G A COAD 93299611 + 93299591 93299631 41 TGGTCTTTCAACTGGAGCGCCTCGAACAGCAGATGAACTCC TGGTCTTTCAACTGGAGCGCCTCAAACAGCAGATGAACTCC < 41bp 0.776078510754468 0.565690282482523 0.9235791 0.90222776 prediction 0.420776456543891 Functional Loss - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93299611 chr14:93299614 nonsynonymous SNV 0.139 4 24 hm5C_associated_SNPs_89516 0 0 1 0 1 GOLGA5 chr14:93299692 5'GT 93299692 Upstream 79bp
chr6 36075286 36075286 1 + C T OV 36075283 + 36075263 36075303 41 GGACTCAGATAAGAGAATTACAGCGGCCCAAGCCCTTGCAC GGACTCAGATAAGAGAATTACAGTGGCCCAAGCCCTTGCAC < 41bp 0.731206749204464 0.520819295614646 0.43570766 0.3957727 prediction 0.420774907179634 Functional Loss - MAPK14 ENSG00000112062 CDS Human protein_coding chr6:36075283 chr6:36075286 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_89518 0 0 1 0 1 MAPK14 chr6:36075232 3'AG 36075232 Downstream 55bp
chr17 48674155 48674155 1 + G A STAD 48674152 + 48674132 48674172 41 CTGCCGCCTCTCATCATCCACACGGCCGCCACACCCATGTC CTGCCGCCTCTCATCATCCACACAGCCGCCACACCCATGTC < 41bp 0.714762694076181 0.504377729441933 0.051986158 0.02340144 prediction 0.420769929268497 Functional Loss - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48674152 chr17:48674155 synonymous SNV . 0 24 hm5C_associated_SNPs_89520 0 0 0 0 1 CACNA1G chr17:48674091 3'AG 48674091 Downstream 65bp
chr16 68712724 68712724 1 + C T UCEC 68712721 + 68712701 68712741 41 GTGGAGGACCCCATGAACATCTCCATCATCGTGACCGACCA GTGGAGGACCCCATGAACATCTCTATCATCGTGACCGACCA < 41bp 0.800219664930065 0.589836879712855 0.96945196 0.9359702 prediction 0.420765570434419 Functional Loss - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68712721 chr16:68712724 synonymous SNV . 0 24 hm5C_associated_SNPs_89523 0 0 0 0 2 CDH3 chr16:68712665 3'AG 68712665 Downstream 60bp
chr16 68712724 68712724 1 + C T UCEC 68712721 + 68712701 68712741 41 GTGGAGGACCCCATGAACATCTCCATCATCGTGACCGACCA GTGGAGGACCCCATGAACATCTCTATCATCGTGACCGACCA < 41bp 0.800219664930065 0.589836879712855 0.96945196 0.9359702 prediction 0.420765570434419 Functional Loss - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68712721 chr16:68712724 synonymous SNV . 0 24 hm5C_associated_SNPs_89523 0 0 0 0 2 CDH3 chr16:68712809 5'GT 68712809 Upstream 86bp
chr19 39868449 39868449 1 + C T UCEC 39868447 + 39868427 39868467 41 AGACATCCCCAGCCAGTTTACACGGGTGATGGGCAAAGGTG AGACATCCCCAGCCAGTTTACATGGGTGATGGGCAAAGGTG < 41bp 0.843743437212197 0.633362228534541 0.54192543 0.58875614 prediction 0.420762417355313 Functional Loss - SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39868447 chr19:39868449 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_89524 0 0 1 0 1 SAMD4B chr19:39868464 5'GT 39868464 Upstream 16bp
chr17 72920768 72920768 1 + C T STAD 72920766 + 72920746 72920786 41 CAGGGCCCCAAGGAGAGCCCCCCGGCGCCGCGTGCGGGCCC CAGGGCCCCAAGGAGAGCCCCCTGGCGCCGCGTGCGGGCCC < 41bp 0.800232723319633 0.589851879065289 0.14892805 0.18730193 prediction 0.420761688508688 Functional Loss - OTOP2 ENSG00000183034 CDS Human protein_coding chr17:72920766 chr17:72920768 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_89525 0 0 1 0 1 OTOP2 chr17:72920695 3'AG 72920695 Downstream 74bp
chr15 27126047 27126047 1 + G A UCEC 27126044 + 27126024 27126064 41 GATGAGACCAATGACAACATCACGATATTTACCAGGATCTT GATGAGACCAATGACAACATCACAATATTTACCAGGATCTT < 41bp 0.797290986011232 0.586910252753539 0.24418548 0.13011557 prediction 0.420761466515387 Functional Loss - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27126044 chr15:27126047 synonymous SNV . 0 24 hm5C_associated_SNPs_89526 0 0 0 0 2 GABRA5 chr15:27125993 3'AG 27125993 Downstream 55bp
chr15 27126047 27126047 1 + G A UCEC 27126044 + 27126024 27126064 41 GATGAGACCAATGACAACATCACGATATTTACCAGGATCTT GATGAGACCAATGACAACATCACAATATTTACCAGGATCTT < 41bp 0.797290986011232 0.586910252753539 0.24418548 0.13011557 prediction 0.420761466515387 Functional Loss - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27126044 chr15:27126047 synonymous SNV . 0 24 hm5C_associated_SNPs_89526 0 0 0 0 2 GABRA5 chr15:27126114 5'GT 27126114 Upstream 68bp
chr3 124458976 124458976 1 + G C LUSC 124458975 + 124458955 124458995 41 AAGTGGGCCTGCCTTTGCATCGGGGGTGCCTCCTTATTGCG AAGTGGGCCTGCCTTTGCATCCGGGGTGCCTCCTTATTGCG < 41bp 0.894713977773903 0.684334117399133 0.95770407 0.93204117 prediction 0.42075972074954 Functional Loss - UMPS ENSG00000114491 CDS Human protein_coding chr3:124458975 chr3:124458976 nonsynonymous SNV 0.978 4 22 hm5C_associated_SNPs_89528 0 0 1 0 1 UMPS chr3:124459046 5'GT 124459046 Upstream 71bp
chr9 6328912 6328912 1 + G T LUAD 6328910 + 6328890 6328930 41 TCCACCATGGGCACTCTCATCTGCAGGAAGCTTGGAGGCGT TCCACCATGGGCACTCTCATCTTCAGGAAGCTTGGAGGCGT < 41bp 0.903614057847553 0.69323464494551 0.6976149 0.43540478 prediction 0.420758825804085 Functional Loss - TPD52L3 ENSG00000170777 CDS Human protein_coding chr9:6328910 chr9:6328912 nonsynonymous SNV 0.794 2 23 hm5C_associated_SNPs_89529 0 0 0 0 1 TPD52L3 chr9:6328962 5'GT 6328962 Upstream 51bp
chr7 73477983 73477983 1 + G A COAD 73477980 + 73477960 73478000 41 GAGCCGCTGGGCTCGGAGGACTCGGAGTCGGAGGGCTTGGA GAGCCGCTGGGCTCGGAGGACTCAGAGTCGGAGGGCTTGGA < 41bp 0.7544047702708 0.544028516983595 0.9268058 0.9004462 prediction 0.42075250657441 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73477980 chr7:73477983 nonsynonymous SNV 0.009 3 24 hm5C_associated_SNPs_89531 1 0 0 0 2 ELN chr7:73477951 3'AG 73477951 Downstream 33bp
chr7 73477983 73477983 1 + G A COAD 73477980 + 73477960 73478000 41 GAGCCGCTGGGCTCGGAGGACTCGGAGTCGGAGGGCTTGGA GAGCCGCTGGGCTCGGAGGACTCAGAGTCGGAGGGCTTGGA < 41bp 0.7544047702708 0.544028516983595 0.9268058 0.9004462 prediction 0.42075250657441 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73477980 chr7:73477983 nonsynonymous SNV 0.009 3 24 hm5C_associated_SNPs_89531 1 0 0 0 2 ELN chr7:73478025 5'GT 73478025 Upstream 43bp
chr1 85547062 85547062 1 + A T LUAD 85547058 + 85547038 85547078 41 TGAGGACCTGCGCAACAGAGCTGCAGTATCTGATTTCCACC TGAGGACCTGCGCAACAGAGCTGCTGTATCTGATTTCCACC < 41bp 0.710376139681566 0.367046955971078 0.12973735 0.094476014 prediction 0.420752279363132 Functional Loss - WDR63 ENSG00000162643 CDS Human protein_coding chr1:85547058 chr1:85547062 synonymous SNV . 0 25 hm5C_associated_SNPs_89532 0 0 0 0 1 WDR63 chr1:85547098 5'GT 85547098 Upstream 37bp
chr15 74166088 74166088 1 + G A CESC 74166085 + 74166065 74166105 41 TCCTGAAAACAGCCTCTCTGCCAGACAGTCAGCCTCCTTCA TCCTGAAAACAGCCTCTCTGCCAAACAGTCAGCCTCCTTCA < 41bp 0.710376133117221 0.460818136929532 0.38550448 0.077896655 prediction 0.420752266234442 Functional Loss - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74166085 chr15:74166088 nonsynonymous SNV 0.825 0 24 hm5C_associated_SNPs_89533 0 0 0 0 1 TBC1D21 chr15:74166110 5'GT 74166110 Upstream 23bp
chr8 143624776 143624776 1 + C T STAD 143624774 + 143624754 143624794 41 CTCCCTGCAGCGGCGGAAGTCGCGGTATGCAGAACTGGACT CTCCCTGCAGCGGCGGAAGTCGTGGTATGCAGAACTGGACT < 41bp 0.710375882817304 0.446800268399674 0.91880715 0.9115361 prediction 0.420751765634608 Functional Loss - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143624774 chr8:143624776 nonsynonymous SNV 0.600 3 23 hm5C_associated_SNPs_89534 0 0 0 0 2 ADGRB1 chr8:143624764 3'AG 143624764 Downstream 13bp
chr8 143624776 143624776 1 + C T STAD 143624774 + 143624754 143624794 41 CTCCCTGCAGCGGCGGAAGTCGCGGTATGCAGAACTGGACT CTCCCTGCAGCGGCGGAAGTCGTGGTATGCAGAACTGGACT < 41bp 0.710375882817304 0.446800268399674 0.91880715 0.9115361 prediction 0.420751765634608 Functional Loss - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143624774 chr8:143624776 nonsynonymous SNV 0.600 3 23 hm5C_associated_SNPs_89534 0 0 0 0 2 ADGRB1 chr8:143624799 5'GT 143624799 Upstream 24bp
chr17 74464902 74464902 1 + G T UCEC 74464898 + 74464878 74464918 41 CACCTGGGATCCCCGAGTCCCCGAGCTGTCAGCGGCGCCAC CACCTGGGATCCCCGAGTCCCCGATCTGTCAGCGGCGCCAC < 41bp 0.710373066669923 0.493754401327011 0.102681726 0.017630994 prediction 0.420746133339846 Functional Loss - AANAT ENSG00000129673 CDS Human protein_coding chr17:74464898 chr17:74464902 nonsynonymous SNV 0.171 0 25 hm5C_associated_SNPs_89536 0 0 0 0 1 AANAT chr17:74464991 5'GT 74464991 Upstream 90bp
chr2 223536583 223536583 1 + A C rs368078304 223536579 + 223536559 223536599 41 GTGGCCGTGCTGCAGTGGGTCCTGAAATACCTGCTGCTCGG GTGGCCGTGCTGCAGTGGGTCCTGCAATACCTGCTGCTCGG < 41bp 0.710373029258073 0.324644600629881 0.14147863 0.23255879 prediction 0.420746058516146 Functional Loss - MOGAT1 ENSG00000124003 CDS Human protein_coding chr2:223536579 chr2:223536583 nonsynonymous SNV 0.930 1 25 hm5C_associated_SNPs_89537 0 0 0 0 1 MOGAT1 chr2:223536598 5'GT 223536598 Upstream 16bp
chrX 101818182 101818182 1 + C T SKCM 101818180 + 101818160 101818200 41 TCTCCCAGCAAGCTCTTGATCTCCAGAGGCTCCGCTTTGAC TCTCCCAGCAAGCTCTTGATCTTCAGAGGCTCCGCTTTGAC < 41bp 0.880677458369084 0.670306704485757 0.95483625 0.83169746 prediction 0.420741507766653 Functional Loss - NXF4 ENSG00000196970 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:101818180 chrX:101818182 . . 0 23 hm5C_associated_SNPs_89538 0 0 1 0 1 NXF4 chrX:101818135 3'AG 101818135 Downstream 48bp
chr2 219496999 219496999 1 + C T SARC 219496997 + 219496977 219497017 41 AGTTTGAGACTGAGCCTGAGCCCCAGGAGCAGAACCTTCAG AGTTTGAGACTGAGCCTGAGCCTCAGGAGCAGAACCTTCAG < 41bp 0.710364564586768 0.426321601672261 0.08753905 0.06593308 prediction 0.420729129173535 Functional Loss - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219496997 chr2:219496999 synonymous SNV . 0 23 hm5C_associated_SNPs_89540 0 0 0 0 1 PLCD4 chr2:219497035 5'GT 219497035 Upstream 37bp
chr7 16705118 16705118 1 + G A UCEC 16705115 + 16705095 16705135 41 AACAGGCCAGCGGTTCAAAACTCGGAAAAGGGGTAGGTTGT AACAGGCCAGCGGTTCAAAACTCAGAAAAGGGGTAGGTTGT < 41bp 0.785455154619437 0.575094630015295 0.09821886 0.05987227 prediction 0.420721049208284 Functional Loss - BZW2 ENSG00000136261 CDS Human protein_coding chr7:16705115 chr7:16705118 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_89544 0 0 1 0 2 BZW2 chr7:16705062 3'AG 16705062 Downstream 57bp
chr7 16705118 16705118 1 + G A UCEC 16705115 + 16705095 16705135 41 AACAGGCCAGCGGTTCAAAACTCGGAAAAGGGGTAGGTTGT AACAGGCCAGCGGTTCAAAACTCAGAAAAGGGGTAGGTTGT < 41bp 0.785455154619437 0.575094630015295 0.09821886 0.05987227 prediction 0.420721049208284 Functional Loss - BZW2 ENSG00000136261 CDS Human protein_coding chr7:16705115 chr7:16705118 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_89544 0 0 1 0 2 BZW2 chr7:16705126 5'GT 16705126 Upstream 9bp
chr13 114203769 114203769 1 + G A COAD 114203766 + 114203746 114203786 41 CTCCTTATACTGAGTGTGACCACGCTCAGCCTCTTGCTCGC CTCCTTATACTGAGTGTGACCACACTCAGCCTCTTGCTCGC < 41bp 0.799325791681716 0.588969748285501 0.6243184 0.38345635 prediction 0.42071208679243 Functional Loss - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114203766 chr13:114203769 synonymous SNV . 0 24 hm5C_associated_SNPs_89546 0 0 1 0 1 TMCO3 chr13:114203740 3'AG 114203740 Downstream 30bp
chr16 89287559 89287559 1 + C T UCEC 89287557 + 89287537 89287577 41 TGGCAGCCCCTGACCTGGCCCACGGTAAGTCCTGGTGGGGC TGGCAGCCCCTGACCTGGCCCATGGTAAGTCCTGGTGGGGC < 41bp 0.710354356117245 0.459172549043858 0.31536692 0.39730844 prediction 0.420708712234489 Functional Loss - ZNF778 ENSG00000170100 CDS Human protein_coding chr16:89287557 chr16:89287559 synonymous SNV . 0 23 hm5C_associated_SNPs_89547 0 0 1 1 1 ZNF778 chr16:89287560 5'GT 89287560 Upstream 2bp
chr3 190120152 190120152 1 + G A UCEC 190120149 + 190120129 190120169 41 AGCACAAAATGCCGAGGCCTCTGGTGGGAATGCGTCACAAA AGCACAAAATGCCGAGGCCTCTGATGGGAATGCGTCACAAA < 41bp 0.791619411889526 0.581265364228477 0.11844626 0.029724568 prediction 0.420708095322098 Functional Loss - CLDN16 ENSG00000113946 CDS Human protein_coding chr3:190120149 chr3:190120152 stopgain 1.000 1 24 hm5C_associated_SNPs_89548 0 0 0 0 2 CLDN16 chr3:190120126 3'AG 190120126 Downstream 27bp
chr3 190120152 190120152 1 + G A UCEC 190120149 + 190120129 190120169 41 AGCACAAAATGCCGAGGCCTCTGGTGGGAATGCGTCACAAA AGCACAAAATGCCGAGGCCTCTGATGGGAATGCGTCACAAA < 41bp 0.791619411889526 0.581265364228477 0.11844626 0.029724568 prediction 0.420708095322098 Functional Loss - CLDN16 ENSG00000113946 CDS Human protein_coding chr3:190120149 chr3:190120152 stopgain 1.000 1 24 hm5C_associated_SNPs_89548 0 0 0 0 2 CLDN16 chr3:190120228 5'GT 190120228 Upstream 77bp
chr16 23581820 23581820 1 + C T COAD 23581818 + 23581798 23581838 41 CAGGCGTTTCAGTTGGGCCCCACGGAAGCCTCTTACTACTG CAGGCGTTTCAGTTGGGCCCCATGGAAGCCTCTTACTACTG < 41bp 0.710353153139712 0.448001516673525 0.06406826 0.025103152 prediction 0.420706306279425 Functional Loss - UBFD1 ENSG00000103353 CDS Human protein_coding chr16:23581818 chr16:23581820 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_89549 0 0 1 0 1 UBFD1 chr16:23581801 3'AG 23581801 Downstream 20bp
chr2 79350281 79350281 1 + G T UCEC 79350279 + 79350259 79350299 41 CTCATTGACTTATAGGATTCCAGAAATGGAAGGATGTGCCT CTCATTGACTTATAGGATTCCATAAATGGAAGGATGTGCCT < 41bp 0.710352906444078 0.377748125206156 0.15099666 0.088329226 prediction 0.420705812888157 Functional Loss - REG1A ENSG00000115386 CDS Human protein_coding chr2:79350279 chr2:79350281 nonsynonymous SNV 0.044 0 23 hm5C_associated_SNPs_89550 0 0 0 0 1 REG1A chr2:79350274 3'AG 79350274 Downstream 8bp
chrX 54839593 54839593 1 + G T OV 54839590 + 54839570 54839610 41 GCGCAAGTTGGGGCTGCGCCCTGGGTATGATTGGGCTCTCT GCGCAAGTTGGGGCTGCGCCCTGTGTATGATTGGGCTCTCT < 41bp 0.934004538131481 0.723653759093414 0.86990964 0.33864737 prediction 0.420701558076133 Functional Loss - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54839590 chrX:54839593 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_89553 0 0 1 0 2 MAGED2 chrX:54839551 3'AG 54839551 Downstream 43bp
chrX 54839593 54839593 1 + G T OV 54839590 + 54839570 54839610 41 GCGCAAGTTGGGGCTGCGCCCTGGGTATGATTGGGCTCTCT GCGCAAGTTGGGGCTGCGCCCTGTGTATGATTGGGCTCTCT < 41bp 0.934004538131481 0.723653759093414 0.86990964 0.33864737 prediction 0.420701558076133 Functional Loss - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54839590 chrX:54839593 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_89553 0 0 1 0 2 MAGED2 chrX:54839593 5'GT 54839593 Upstream 1bp
chr11 606503 606503 1 + C T LIHC 606500 + 606480 606520 41 AGGAGGAGCCAGTGCCTGACCTGCTGGGCAGCATCCTGTCG AGGAGGAGCCAGTGCCTGACCTGTTGGGCAGCATCCTGTCG < 41bp 0.722953394755693 0.512602685235831 0.08505723 0.12750766 prediction 0.420701419039724 Functional Loss - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:606500 chr11:606503 synonymous SNV . 0 24 hm5C_associated_SNPs_89554 0 0 1 0 2 PHRF1 chr11:606442 3'AG 606442 Downstream 62bp
chr11 606503 606503 1 + C T LIHC 606500 + 606480 606520 41 AGGAGGAGCCAGTGCCTGACCTGCTGGGCAGCATCCTGTCG AGGAGGAGCCAGTGCCTGACCTGTTGGGCAGCATCCTGTCG < 41bp 0.722953394755693 0.512602685235831 0.08505723 0.12750766 prediction 0.420701419039724 Functional Loss - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:606500 chr11:606503 synonymous SNV . 0 24 hm5C_associated_SNPs_89554 0 0 1 0 2 PHRF1 chr11:606596 5'GT 606596 Upstream 94bp
chr12 52309848 52309848 1 + C T UCEC 52309845 + 52309825 52309865 41 GCTGTGATGCACTCACAGGGCAGCGATTACCTGGACATCGG GCTGTGATGCACTCACAGGGCAGTGATTACCTGGACATCGG < 41bp 0.725365149448762 0.515017015763444 0.09636018 0.09149021 prediction 0.420696267370637 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309845 chr12:52309848 synonymous SNV . 0 24 hm5C_associated_SNPs_89556 0 0 0 0 1 ACVRL1 chr12:52309820 3'AG 52309820 Downstream 29bp
chr6 150569907 150569907 1 + G A PRAD 150569904 + 150569884 150569924 41 ATTTATCAAAGAGCTGCTTTCTCGGATAAGAGGCATGAGGA ATTTATCAAAGAGCTGCTTTCTCAGATAAGAGGCATGAGGA < 41bp 0.741514242912116 0.531166559634015 0.7642858 0.38654855 prediction 0.420695366556203 Functional Loss - PPP1R14C ENSG00000198729 CDS Human protein_coding chr6:150569904 chr6:150569907 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_89557 0 0 1 0 1 PPP1R14C chr6:150569882 3'AG 150569882 Downstream 26bp
chr19 13869957 13869957 1 + G T HNSC 13869954 + 13869934 13869974 41 CTGGAGACGGACGCCATGTTCCGGCTGGAGCATGGCGAGGC CTGGAGACGGACGCCATGTTCCGTCTGGAGCATGGCGAGGC < 41bp 0.710346127980984 0.3067697333896 0.8302704 0.2914347 prediction 0.420692255961967 Functional Loss - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13869954 chr19:13869957 synonymous SNV . 0 24 hm5C_associated_SNPs_89559 0 0 1 0 1 CCDC130 chr19:13869914 3'AG 13869914 Downstream 44bp
chr22 46684374 46684374 1 + G T UCEC 46684370 + 46684350 46684390 41 TCCTGCCTGTGGCCCGGAAGCACAGCCGAGACCACATCCTG TCCTGCCTGTGGCCCGGAAGCACATCCGAGACCACATCCTG < 41bp 0.715840545816346 0.505494684524365 0.2819094 0.14235163 prediction 0.420691722583963 Functional Loss - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46684370 chr22:46684374 nonsynonymous SNV 0.986 0 25 hm5C_associated_SNPs_89560 0 0 0 0 1 TTC38 chr22:46684320 3'AG 46684320 Downstream 55bp
chr9 95738925 95738925 1 + C T rs35070315 95738922 + 95738902 95738942 41 CCCCAGGAGGAGGCGGACAGCGACGTGGGTGAGGAACCTGA CCCCAGGAGGAGGCGGACAGCGATGTGGGTGAGGAACCTGA < 41bp 0.737871599086495 0.527532327296646 0.59123915 0.5737528 prediction 0.420678543579698 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95738922 chr9:95738925 synonymous SNV . 0 24 hm5C_associated_SNPs_89566 0 0 0 0 1 FGD3 chr9:95738991 5'GT 95738991 Upstream 67bp
chr5 1235756 1235756 1 + G A SKCM 1235753 + 1235733 1235773 41 GTCGTGTACATGTGTGTCATCAGGGGCATTGAGACTACAGG GTCGTGTACATGTGTGTCATCAGAGGCATTGAGACTACAGG < 41bp 0.806677434715544 0.596339441539902 0.9147432 0.9121938 prediction 0.420675986351284 Functional Loss - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1235753 chr5:1235756 synonymous SNV . 0 24 hm5C_associated_SNPs_89567 0 0 0 0 1 SLC6A18 chr5:1235777 5'GT 1235777 Upstream 22bp
chr9 115631162 115631162 1 + G A rs116220712 115631159 + 115631139 115631179 41 CGGAGACTCTTCTACCTACACAGGGCCTGGCACCCTATACC CGGAGACTCTTCTACCTACACAGAGCCTGGCACCCTATACC < 41bp 0.710337729510697 0.464285539930697 0.47222325 0.21084824 prediction 0.420675459021393 Functional Loss - SNX30 ENSG00000148158 UTR3 Human protein_coding chr9:115631159 chr9:115631162 . . 0 24 hm5C_associated_SNPs_89568 0 0 1 0 1 SNX30 chr9:115631064 3'AG 115631064 Downstream 99bp
chr4 3446640 3446640 1 + C T SKCM 3446637 + 3446617 3446657 41 CTCAGCTGCCTGGCCTGGAACTCCGATCTGCTCTACCAGGA CTCAGCTGCCTGGCCTGGAACTCTGATCTGCTCTACCAGGA < 41bp 0.713018525042405 0.502683008926251 0.32464996 0.262568 prediction 0.420671032232309 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3446637 chr4:3446640 synonymous SNV . 0 24 hm5C_associated_SNPs_89570 0 0 0 0 2 HGFAC chr4:3446546 3'AG 3446546 Downstream 95bp
chr4 3446640 3446640 1 + C T SKCM 3446637 + 3446617 3446657 41 CTCAGCTGCCTGGCCTGGAACTCCGATCTGCTCTACCAGGA CTCAGCTGCCTGGCCTGGAACTCTGATCTGCTCTACCAGGA < 41bp 0.713018525042405 0.502683008926251 0.32464996 0.262568 prediction 0.420671032232309 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3446637 chr4:3446640 synonymous SNV . 0 24 hm5C_associated_SNPs_89570 0 0 0 0 2 HGFAC chr4:3446720 5'GT 3446720 Upstream 81bp
chr20 20033223 20033223 1 + A T rs2273056 20033219 + 20033199 20033239 41 AGCGCGTGGAGTGCGGCGTCCTGGAGCTGCGGATGAGGTGG AGCGCGTGGAGTGCGGCGTCCTGGTGCTGCGGATGAGGTGG < 41bp 0.840523778873696 0.6301887003823 0.90875006 0.88453466 prediction 0.420670156982792 Functional Loss - CRNKL1 ENSG00000101343 CDS Human other chr20:20033219 chr20:20033223 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_89571 0 0 0 0 1 CRNKL1 chr20:20033235 5'GT 20033235 Upstream 13bp
chr11 63719721 63719721 1 + C T rs114511851 63719719 + 63719699 63719739 41 CCTCTTCTCAGGTTGAATGTCTCCATTGAATGTAAGCGAGT CCTCTTCTCAGGTTGAATGTCTTCATTGAATGTAAGCGAGT < 41bp 0.710334087811497 0.398379035330322 0.9647295 0.45873094 prediction 0.420668175622994 Functional Loss - NAA40 ENSG00000110583 CDS Human protein_coding chr11:63719719 chr11:63719721 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_89573 0 0 1 0 2 NAA40 chr11:63719710 3'AG 63719710 Downstream 12bp
chr11 63719721 63719721 1 + C T rs114511851 63719719 + 63719699 63719739 41 CCTCTTCTCAGGTTGAATGTCTCCATTGAATGTAAGCGAGT CCTCTTCTCAGGTTGAATGTCTTCATTGAATGTAAGCGAGT < 41bp 0.710334087811497 0.398379035330322 0.9647295 0.45873094 prediction 0.420668175622994 Functional Loss - NAA40 ENSG00000110583 CDS Human protein_coding chr11:63719719 chr11:63719721 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_89573 0 0 1 0 2 NAA40 chr11:63719805 5'GT 63719805 Upstream 85bp
chr5 15936593 15936593 1 + G T PAAD 15936591 + 15936571 15936611 41 TGACCTGCATCAGCTTGACCCGGGAGGCCTCCATTAAACTG TGACCTGCATCAGCTTGACCCGTGAGGCCTCCATTAAACTG < 41bp 0.710334044399006 0.386949737848696 0.8164656 0.0027289689 prediction 0.420668088798012 Functional Loss - FBXL7 ENSG00000183580 CDS Human protein_coding chr5:15936591 chr5:15936593 synonymous SNV . 0 23 hm5C_associated_SNPs_89574 0 0 0 0 1 FBXL7 chr5:15936559 3'AG 15936559 Downstream 35bp
chr9 133759397 133759397 1 + C T UCEC 133759395 + 133759375 133759415 41 TGCCGTGTCTCCATTGCTCCCTCGAAAAGAGCGAGGTCCCC TGCCGTGTCTCCATTGCTCCCTTGAAAAGAGCGAGGTCCCC < 41bp 0.710333195838927 0.419978006319687 0.93409634 0.21465671 prediction 0.420666391677854 Functional Loss - ABL1 ENSG00000097007 CDS Human protein_coding chr9:133759395 chr9:133759397 stopgain 0.981 1 23 hm5C_associated_SNPs_89575 0 0 1 0 1 ABL1 chr9:133759356 3'AG 133759356 Downstream 42bp
chr4 89414196 89414196 1 + G A rs148027798 89414193 + 89414173 89414213 41 GTGGAGAAATTGGGTATGACCTCGGAGGAGTCAAGAAAGAG GTGGAGAAATTGGGTATGACCTCAGAGGAGTCAAGAAAGAG < 41bp 0.710333156051483 0.468229214508701 0.29378363 0.26310617 prediction 0.420666312102965 Functional Loss - HERC5 ENSG00000138646 CDS Human protein_coding chr4:89414193 chr4:89414196 nonsynonymous SNV 0.174 0 24 hm5C_associated_SNPs_89576 0 0 1 0 1 HERC5 chr4:89414163 3'AG 89414163 Downstream 34bp
chr4 47548644 47548644 1 + G T LUSC 47548642 + 47548622 47548662 41 TGTGCTTTTTATCCCACAGCCAGGAGGTTGGAGTCCTATCA TGTGCTTTTTATCCCACAGCCATGAGGTTGGAGTCCTATCA < 41bp 0.71033126199767 0.363836565042428 0.8918233 0.3367638 prediction 0.420662523995341 Functional Loss - ATP10D ENSG00000145246 CDS Human protein_coding chr4:47548642 chr4:47548644 nonsynonymous SNV 0.960 2 23 hm5C_associated_SNPs_89577 0 0 0 0 1 ATP10D chr4:47548641 3'AG 47548641 Downstream 4bp
chr4 25929958 25929958 1 + G A UCEC 25929955 + 25929935 25929975 41 AGAAGGAACAAGCTATAAATCGGGCTGGAATTGTTCAAGAG AGAAGGAACAAGCTATAAATCGGACTGGAATTGTTCAAGAG < 41bp 0.770564399486402 0.560233610445751 0.9348684 0.910505 prediction 0.420661578081302 Functional Loss - SMIM20 ENSG00000250317 CDS Human protein_coding chr4:25929955 chr4:25929958 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_89578 0 0 1 0 2 SMIM20 chr4:25929935 3'AG 25929935 Downstream 24bp
chr4 25929958 25929958 1 + G A UCEC 25929955 + 25929935 25929975 41 AGAAGGAACAAGCTATAAATCGGGCTGGAATTGTTCAAGAG AGAAGGAACAAGCTATAAATCGGACTGGAATTGTTCAAGAG < 41bp 0.770564399486402 0.560233610445751 0.9348684 0.910505 prediction 0.420661578081302 Functional Loss - SMIM20 ENSG00000250317 CDS Human protein_coding chr4:25929955 chr4:25929958 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_89578 0 0 1 0 2 SMIM20 chr4:25929991 5'GT 25929991 Upstream 34bp
chr14 52735298 52735298 1 + C T CESC 52735296 + 52735276 52735316 41 GGACGGGAGGGAAGCGTCCCCTCAGCCCCTGGAGGAGCTGG GGACGGGAGGGAAGCGTCCCCTTAGCCCCTGGAGGAGCTGG < 41bp 0.794116797179421 0.583786252304266 0.15728846 0.12047979 prediction 0.42066108975031 Functional Loss - PTGDR ENSG00000168229 CDS Human protein_coding chr14:52735296 chr14:52735298 stopgain 0.041 0 23 hm5C_associated_SNPs_89579 0 0 0 0 1 PTGDR chr14:52735378 5'GT 52735378 Upstream 81bp
chr3 9802446 9802446 1 - G A GBM 9802449 - 9802429 9802469 41 AGTTTCTCCCTGCCCAGGCTCTGCGGTTACCCTCCCTTCTA AGTTTCTCCCTGCCCAGGCTCTGTGGTTACCCTCCCTTCTA < 41bp 0.744173832223153 0.533844184738453 0.043120593 0.010247648 prediction 0.420659294969401 Functional Loss - CAMK1 ENSG00000134072 CDS Human protein_coding chr3:9802449 chr3:9802446 synonymous SNV . 0 24 hm5C_associated_SNPs_89580 0 0 1 0 1 CAMK1 chr3:9802452 3'AG 9802452 Downstream 7bp
chr10 134188652 134188652 1 + G A LUAD 134188649 + 134188629 134188669 41 TCGTCGACGGGCGGCCCTCACTGGAAACCTTTCGCTTGGCC TCGTCGACGGGCGGCCCTCACTGAAAACCTTTCGCTTGGCC < 41bp 0.806202136144578 0.595874270842917 0.40674648 0.16215885 prediction 0.420655730603322 Functional Loss - LRRC27 ENSG00000148814 CDS Human protein_coding chr10:134188649 chr10:134188652 nonsynonymous SNV 0.013 3 24 hm5C_associated_SNPs_89582 0 0 0 0 1 LRRC27 chr10:134188570 3'AG 134188570 Downstream 83bp
chr1 116916056 116916056 1 + C T rs11540947 116916054 + 116916034 116916074 41 GGCTCCCCTGGTCCCGCTCGCTCGGCCGGGAGCTGCTCTGT GGCTCCCCTGGTCCCGCTCGCTTGGCCGGGAGCTGCTCTGT < 41bp 0.808818618991785 0.59849377360181 0.32811758 0.1333842 prediction 0.420649690779952 Functional Loss - ATP1A1 ENSG00000269279 CDS Human other chr1:116916054 chr1:116916056 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_89583 0 0 1 0 1 ATP1A1 chr1:116916145 5'GT 116916145 Upstream 90bp
chr4 56737307 56737307 1 + A C KIRP 56737306 + 56737286 56737326 41 AAGGTCATATAAAGGCCCTTCAGGAAGGAGATCTTGCTTCT AAGGTCATATAAAGGCCCTTCCGGAAGGAGATCTTGCTTCT < 41bp 0.82414510764732 0.613821634214626 0.47944564 0.7041128 prediction 0.420646946865388 Functional Loss - EXOC1 ENSG00000090989 CDS Human protein_coding chr4:56737306 chr4:56737307 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_89584 0 0 1 0 2 EXOC1 chr4:56737267 3'AG 56737267 Downstream 41bp
chr4 56737307 56737307 1 + A C KIRP 56737306 + 56737286 56737326 41 AAGGTCATATAAAGGCCCTTCAGGAAGGAGATCTTGCTTCT AAGGTCATATAAAGGCCCTTCCGGAAGGAGATCTTGCTTCT < 41bp 0.82414510764732 0.613821634214626 0.47944564 0.7041128 prediction 0.420646946865388 Functional Loss - EXOC1 ENSG00000090989 CDS Human protein_coding chr4:56737306 chr4:56737307 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_89584 0 0 1 0 2 EXOC1 chr4:56737399 5'GT 56737399 Upstream 93bp
chr1 17563878 17563878 1 + G A SARC 17563875 + 17563855 17563895 41 GCACAGCAGGTGCAGGCACCCGTGGAGCTCTACTCGGACTG GCACAGCAGGTGCAGGCACCCGTAGAGCTCTACTCGGACTG < 41bp 0.80860526204174 0.598281946728421 0.5061512 0.18582451 prediction 0.420646630626638 Functional Loss - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17563875 chr1:17563878 synonymous SNV . 0 24 hm5C_associated_SNPs_89585 0 0 0 0 2 PADI1 chr1:17563809 3'AG 17563809 Downstream 70bp
chr1 17563878 17563878 1 + G A SARC 17563875 + 17563855 17563895 41 GCACAGCAGGTGCAGGCACCCGTGGAGCTCTACTCGGACTG GCACAGCAGGTGCAGGCACCCGTAGAGCTCTACTCGGACTG < 41bp 0.80860526204174 0.598281946728421 0.5061512 0.18582451 prediction 0.420646630626638 Functional Loss - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17563875 chr1:17563878 synonymous SNV . 0 24 hm5C_associated_SNPs_89585 0 0 0 0 2 PADI1 chr1:17563953 5'GT 17563953 Upstream 76bp
chr19 11998777 11998777 1 + C T rs3810314 11998775 + 11998755 11998795 41 ACAGGAGGTGTAGAGAGGACCCCGGGACATCTGAAAGCCAG ACAGGAGGTGTAGAGAGGACCCTGGGACATCTGAAAGCCAG < 41bp 0.791400838101581 0.581079063781994 0.4791144 0.35652494 prediction 0.420643548639173 Functional Loss - ZNF69 ENSG00000198429 CDS Human protein_coding chr19:11998775 chr19:11998777 synonymous SNV . 0 23 hm5C_associated_SNPs_89587 0 0 0 0 1 ZNF69 chr19:11998801 5'GT 11998801 Upstream 25bp
chr1 68564415 68564415 1 + G A UCEC 68564412 + 68564392 68564432 41 CAAACAAAGCACAATCTTCCCTCGATTTACATGGGAGTTGC CAAACAAAGCACAATCTTCCCTCAATTTACATGGGAGTTGC < 41bp 0.731595723761183 0.521274036863293 0.70481324 0.12450203 prediction 0.420643373795779 Functional Loss - WLS ENSG00000116729 CDS Human protein_coding chr1:68564412 chr1:68564415 nonsynonymous SNV 0.709 1 24 hm5C_associated_SNPs_89588 0 0 0 0 1 WLS chr1:68564326 3'AG 68564326 Downstream 90bp
chr14 100995422 100995422 1 + C T HNSC 100995419 + 100995399 100995439 41 TCTCAGGAGAGGTTCACCTGCCCCAGCCTCGCCTTGCACCC TCTCAGGAGAGGTTCACCTGCCCTAGCCTCGCCTTGCACCC < 41bp 0.75939658556258 0.549078258644306 0.110804886 0.15608251 prediction 0.420636653836546 Functional Loss - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100995419 chr14:100995422 synonymous SNV . 0 24 hm5C_associated_SNPs_89589 0 0 0 0 1 WDR25 chr14:100995405 3'AG 100995405 Downstream 18bp
chr19 1051971 1051971 1 + T C LIHC 1051970 + 1051950 1051990 41 TGATCCTCTCCACCCACCACCTGGATGAGGCAGAGCTGCTG TGATCCTCTCCACCCACCACCCGGATGAGGCAGAGCTGCTG < 41bp 0.710317591435773 0.459758318585069 0.21358916 0.29819077 prediction 0.420635182871545 Functional Loss - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1051970 chr19:1051971 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_89590 0 0 1 0 1 ABCA7 chr19:1051941 3'AG 1051941 Downstream 31bp
chr7 99717419 99717419 1 + G C LUAD 99717418 + 99717398 99717438 41 TTCCTTTTTTTGGCCGTGCACGAGGCTTGGGCTGGGATGTT TTCCTTTTTTTGGCCGTGCACCAGGCTTGGGCTGGGATGTT < 41bp 0.710311240127744 0.392097475566444 0.89009434 0.47425973 prediction 0.420622480255489 Functional Loss - CNPY4 ENSG00000166997 CDS Human protein_coding chr7:99717418 chr7:99717419 nonsynonymous SNV 0.118 0 22 hm5C_associated_SNPs_89596 0 0 1 0 1 CNPY4 chr7:99717485 5'GT 99717485 Upstream 67bp
chr1 206658621 206658621 1 + G T rs141003735 206658618 + 206658598 206658638 41 ACCGGGAGCTGGTGAAGAGCCGGGATCAGGTACATGAGGAC ACCGGGAGCTGGTGAAGAGCCGGTATCAGGTACATGAGGAC < 41bp 0.936498736479727 0.726187686474483 0.87533313 0.18042624 prediction 0.420622100010489 Functional Loss - IKBKE ENSG00000143466 CDS Human other chr1:206658618 chr1:206658621 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_89597 0 0 0 0 2 IKBKE chr1:206658531 3'AG 206658531 Downstream 91bp
chr1 206658621 206658621 1 + G T rs141003735 206658618 + 206658598 206658638 41 ACCGGGAGCTGGTGAAGAGCCGGGATCAGGTACATGAGGAC ACCGGGAGCTGGTGAAGAGCCGGTATCAGGTACATGAGGAC < 41bp 0.936498736479727 0.726187686474483 0.87533313 0.18042624 prediction 0.420622100010489 Functional Loss - IKBKE ENSG00000143466 CDS Human other chr1:206658618 chr1:206658621 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_89597 0 0 0 0 2 IKBKE chr1:206658643 5'GT 206658643 Upstream 23bp
chr8 11412964 11412964 1 + G T LUSC 11412962 + 11412942 11412982 41 CTCAGGCTGGTCAGGAAACTCGGGTCTGGACAATTCGGCGA CTCAGGCTGGTCAGGAAACTCGTGTCTGGACAATTCGGCGA < 41bp 0.918712048879224 0.708402289185237 0.91489667 0.4783811 prediction 0.420619519387974 Functional Loss - BLK ENSG00000136573 CDS Human protein_coding chr8:11412962 chr8:11412964 nonsynonymous SNV 0.995 5 23 hm5C_associated_SNPs_89598 0 0 0 0 1 BLK chr8:11412993 5'GT 11412993 Upstream 30bp
chr8 87474063 87474063 1 + G A COAD 87474060 + 87474040 87474080 41 TGGCAAAGACACTTGGTTACCAAGAAGCCATACATGGTAAG TGGCAAAGACACTTGGTTACCAAAAAGCCATACATGGTAAG < 41bp 0.760701988778548 0.550397463014743 0.4178827 0.9000565 prediction 0.42060905152761 Functional Loss - WWP1 ENSG00000123124 CDS Human protein_coding chr8:87474060 chr8:87474063 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_89601 0 0 1 0 2 WWP1 chr8:87474003 3'AG 87474003 Downstream 61bp
chr8 87474063 87474063 1 + G A COAD 87474060 + 87474040 87474080 41 TGGCAAAGACACTTGGTTACCAAGAAGCCATACATGGTAAG TGGCAAAGACACTTGGTTACCAAAAAGCCATACATGGTAAG < 41bp 0.760701988778548 0.550397463014743 0.4178827 0.9000565 prediction 0.42060905152761 Functional Loss - WWP1 ENSG00000123124 CDS Human protein_coding chr8:87474060 chr8:87474063 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_89601 0 0 1 0 2 WWP1 chr8:87474075 5'GT 87474075 Upstream 13bp
chr3 39170370 39170370 1 + C T rs35581078 39170367 + 39170347 39170387 41 GGCCCTCTGTGCAGCCTAGCCAGCGGGCATCCATCTTATTG GGCCCTCTGTGCAGCCTAGCCAGTGGGCATCCATCTTATTG < 41bp 0.730278573585483 0.51997669498532 0.6194824 0.12908942 prediction 0.420603757200326 Functional Loss - TTC21A ENSG00000168026 CDS Human protein_coding chr3:39170367 chr3:39170370 nonsynonymous SNV 0.901 4 24 hm5C_associated_SNPs_89604 0 0 0 0 1 TTC21A chr3:39170423 5'GT 39170423 Upstream 54bp
chr19 4433137 4433137 1 + G T LUAD 4433135 + 4433115 4433155 41 AGGTCATCATCCGGGAGTTCCAGGAGCACTGCCGCCGGGGA AGGTCATCATCCGGGAGTTCCATGAGCACTGCCGCCGGGGA < 41bp 0.919551637156539 0.709255650315404 0.94443804 0.44411883 prediction 0.42059197368227 Functional Loss - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4433135 chr19:4433137 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_89607 0 0 1 0 1 CHAF1A chr19:4433067 3'AG 4433067 Downstream 71bp
chr15 59408907 59408907 1 + A T KIRC 59408903 + 59408883 59408923 41 CATTAGGTTCAGCCAGTTTCCCGGAAGAAGCTTCAATTAGT CATTAGGTTCAGCCAGTTTCCCGGTAGAAGCTTCAATTAGT < 41bp 0.710294881590975 0.389138655248298 0.39647102 0.28325474 prediction 0.420589763181949 Functional Loss - CCNB2 ENSG00000157456 CDS Human protein_coding chr15:59408903 chr15:59408907 stopgain 0.812 1 25 hm5C_associated_SNPs_89608 0 0 1 0 1 CCNB2 chr15:59408889 3'AG 59408889 Downstream 19bp
chr1 11849370 11849370 1 + G A rs45445997 11849367 + 11849347 11849387 41 ACGCCTGGCAGCCAGGAGCCCAAGGAGAGGAGCTGCCAGTA ACGCCTGGCAGCCAGGAGCCCAAAGAGAGGAGCTGCCAGTA < 41bp 0.814757566146644 0.604463899963166 0.8824687 0.38197923 prediction 0.420587332366957 Functional Loss - C1orf167 ENSG00000215910 CDS Human protein_coding chr1:11849367 chr1:11849370 nonsynonymous SNV 0.038 0 24 hm5C_associated_SNPs_89609 0 0 0 0 1 C1orf167 chr1:11849327 3'AG 11849327 Downstream 44bp
chr7 19184587 19184587 1 + G A COAD 19184584 + 19184564 19184604 41 TCGATCCGGGACAGCCTTTTCTCGTAAGCAAACGTGGGCAC TCGATCCGGGACAGCCTTTTCTCATAAGCAAACGTGGGCAC < 41bp 0.789560630486558 0.579267333573487 0.3221689 0.22776613 prediction 0.420586593826142 Functional Loss - FERD3L ENSG00000146618 CDS Human protein_coding chr7:19184584 chr7:19184587 synonymous SNV . 0 24 hm5C_associated_SNPs_89610 0 0 0 0 1 FERD3L chr7:19184510 3'AG 19184510 Downstream 78bp
chr5 36677083 36677083 1 + G C rs2032892 36677079 + 36677059 36677099 41 TGCTGTGATAAACAATGTGTCTGAGGCCATGGAGACTCTTA TGCTGTGATAAACAATGTGTCTGACGCCATGGAGACTCTTA < 41bp 0.710292911203099 0.412524868700502 0.14250669 0.04147601 prediction 0.420585822406198 Functional Loss - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36677079 chr5:36677083 nonsynonymous SNV 0.991 1 25 hm5C_associated_SNPs_89611 2 0 1 0 1 SLC1A3 chr5:36676994 3'AG 36676994 Downstream 90bp
chr9 34655231 34655231 1 + C T BLCA 34655229 + 34655209 34655249 41 CCACAGATGAGCAGCAGCTGCTCAGGGCTGAGCAGGGTCCT CCACAGATGAGCAGCAGCTGCTTAGGGCTGAGCAGGGTCCT < 41bp 0.710292603908946 0.435491793087806 0.38006887 0.32826075 prediction 0.420585207817892 Functional Loss - IL11RA ENSG00000137070;ENSG00000258728 CDS Human other chr9:34655229 chr9:34655231 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_89612 0 0 0 0 1 IL11RA chr9:34655314 5'GT 34655314 Upstream 84bp
chr3 52538810 52538810 1 + T C UCEC 52538809 + 52538789 52538829 41 TCATCGCAGGGCAGCACATCCTGGAGGACACAAGGACCCAA TCATCGCAGGGCAGCACATCCCGGAGGACACAAGGACCCAA < 41bp 0.797939767959771 0.587650771563068 0.5626719 0.81924295 prediction 0.420577992793407 Functional Loss - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52538809 chr3:52538810 nonsynonymous SNV 0.358 4 22 hm5C_associated_SNPs_89615 0 0 0 0 2 STAB1 chr3:52538755 3'AG 52538755 Downstream 56bp
chr3 52538810 52538810 1 + T C UCEC 52538809 + 52538789 52538829 41 TCATCGCAGGGCAGCACATCCTGGAGGACACAAGGACCCAA TCATCGCAGGGCAGCACATCCCGGAGGACACAAGGACCCAA < 41bp 0.797939767959771 0.587650771563068 0.5626719 0.81924295 prediction 0.420577992793407 Functional Loss - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52538809 chr3:52538810 nonsynonymous SNV 0.358 4 22 hm5C_associated_SNPs_89615 0 0 0 0 2 STAB1 chr3:52538892 5'GT 52538892 Upstream 83bp
chr19 45515491 45515491 1 + G C DLBC 45515487 + 45515467 45515507 41 GCCGCTCGGCCGGCAGCATCCTTGGGGAGAGCAGCACCGAG GCCGCTCGGCCGGCAGCATCCTTGCGGAGAGCAGCACCGAG < 41bp 0.866188607849685 0.655903758875141 0.20519564 0.057627827 prediction 0.420569697949087 Functional Loss - RELB ENSG00000104856 CDS Human protein_coding chr19:45515487 chr19:45515491 nonsynonymous SNV 0.987 3 25 hm5C_associated_SNPs_89618 0 0 0 0 1 RELB chr19:45515534 5'GT 45515534 Upstream 44bp
chr19 35556465 35556465 1 + G A SKCM 35556462 + 35556442 35556482 41 GGCCAACAGGCCGGGGTACTCCAGGAGGCTCGAGTCCCCAT GGCCAACAGGCCGGGGTACTCCAAGAGGCTCGAGTCCCCAT < 41bp 0.813561793308043 0.603277205641272 0.9285139 0.90367365 prediction 0.420569175333542 Functional Loss - HPN ENSG00000105707 CDS Human protein_coding chr19:35556462 chr19:35556465 synonymous SNV . 0 24 hm5C_associated_SNPs_89619 0 0 1 0 1 HPN chr19:35556443 3'AG 35556443 Downstream 23bp
chrX 26158106 26158106 1 + C T SARC 26158104 + 26158084 26158124 41 GCAAATGCACGTTCCAGAACCACGTCTAGCAGCTTCTCCCA GCAAATGCACGTTCCAGAACCATGTCTAGCAGCTTCTCCCA < 41bp 0.817852731262591 0.607569381523115 0.20588058 0.13414374 prediction 0.420566699478951 Functional Loss - MAGEB18 ENSG00000176774 CDS Human protein_coding chrX:26158104 chrX:26158106 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_89620 0 0 0 0 1 MAGEB18 chrX:26158170 5'GT 26158170 Upstream 65bp
chr1 4772033 4772033 1 + G C LUAD 4772032 + 4772012 4772052 41 CTGATAGCCATGTTTCAGCTCGCCGTGGACCTGCCCGCCTG CTGATAGCCATGTTTCAGCTCCCCGTGGACCTGCCCGCCTG < 41bp 0.896603606622887 0.686320394977546 0.2736069 0.15296578 prediction 0.420566423290681 Functional Loss - AJAP1 ENSG00000196581 CDS Human protein_coding chr1:4772032 chr1:4772033 nonsynonymous SNV 0.293 4 22 hm5C_associated_SNPs_89621 0 0 0 0 1 AJAP1 chr1:4771960 3'AG 4771960 Downstream 74bp
chr3 32750266 32750266 1 + A C COAD 32750262 + 32750242 32750282 41 TTATCATCTGCGGCAGTATACAGAAGCCATATCAGTTGGTG TTATCATCTGCGGCAGTATACAGACGCCATATCAGTTGGTG < 41bp 0.710282217856547 0.30977568010891 0.24165502 0.2461249 prediction 0.420564435713095 Functional Loss - CNOT10 ENSG00000182973 CDS Human protein_coding chr3:32750262 chr3:32750266 nonsynonymous SNV 0.987 2 25 hm5C_associated_SNPs_89622 0 0 1 2 1 CNOT10 chr3:32750312 5'GT 32750312 Upstream 47bp
chr1 211529810 211529810 1 + G T GBM 211529808 + 211529788 211529828 41 AGGTTATTCTGGGCCGGTACCAGGTTGGTATTACTCATGAA AGGTTATTCTGGGCCGGTACCATGTTGGTATTACTCATGAA < 41bp 0.710275593820239 0.361990020991413 0.68811667 0.15829092 prediction 0.420551187640477 Functional Loss - TRAF5 ENSG00000082512 CDS Human protein_coding chr1:211529808 chr1:211529810 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_89627 0 0 0 0 1 TRAF5 chr1:211529810 5'GT 211529810 Upstream 1bp
chr9 4841222 4841222 1 + C T rs76643175 4841219 + 4841199 4841239 41 AAGCAGAATGACATCCTTAACTCCAGGCTGCAGGTACTCTG AAGCAGAATGACATCCTTAACTCTAGGCTGCAGGTACTCTG < 41bp 0.710269953865363 0.486454373665968 0.913026 0.8958807 prediction 0.420539907730726 Functional Loss - RCL1 ENSG00000120158 CDS Human protein_coding chr9:4841219 chr9:4841222 nonsynonymous SNV 0.006 1 24 hm5C_associated_SNPs_89631 0 0 0 0 1 RCL1 chr9:4841202 3'AG 4841202 Downstream 21bp
chr4 123305055 123305055 1 + G T UCEC 123305053 + 123305033 123305073 41 AAAGGAGTCTAGATCCAATGCAGCAAAATTAGCTCTTGATG AAAGGAGTCTAGATCCAATGCATCAAAATTAGCTCTTGATG < 41bp 0.710261127496516 0.3742954897069 0.3897098 0.13023844 prediction 0.420522254993032 Functional Loss - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123305053 chr4:123305055 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_89635 0 0 0 0 1 ADAD1 chr4:123305121 5'GT 123305121 Upstream 67bp
chr2 220368858 220368858 1 + C T UCEC 220368855 + 220368835 220368875 41 TTTATCAGTGACATCATCAACTGCGGCATCTACCTCTTTTC TTTATCAGTGACATCATCAACTGTGGCATCTACCTCTTTTC < 41bp 0.740312634487831 0.530051591955279 0.42398697 0.29109877 prediction 0.420522085065104 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220368855 chr2:220368858 synonymous SNV . 0 24 hm5C_associated_SNPs_89636 0 0 1 9 2 GMPPA chr2:220368805 3'AG 220368805 Downstream 54bp
chr2 220368858 220368858 1 + C T UCEC 220368855 + 220368835 220368875 41 TTTATCAGTGACATCATCAACTGCGGCATCTACCTCTTTTC TTTATCAGTGACATCATCAACTGTGGCATCTACCTCTTTTC < 41bp 0.740312634487831 0.530051591955279 0.42398697 0.29109877 prediction 0.420522085065104 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220368855 chr2:220368858 synonymous SNV . 0 24 hm5C_associated_SNPs_89636 0 0 1 9 2 GMPPA chr2:220368935 5'GT 220368935 Upstream 78bp
chrX 13778239 13778239 1 + G A CESC 13778236 + 13778216 13778256 41 GCTTTTTGTACCCTGCAGCCCTAGAGAATGAAGTGTACTGC GCTTTTTGTACCCTGCAGCCCTAAAGAATGAAGTGTACTGC < 41bp 0.783687893702601 0.573434341354289 0.16585827 0.15646213 prediction 0.420507104696624 Functional Loss - OFD1 ENSG00000046651 CDS Human protein_coding chrX:13778236 chrX:13778239 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_89637 0 0 1 2 1 OFD1 chrX:13778234 3'AG 13778234 Downstream 6bp
chr12 117187745 117187745 1 + G A UCEC 117187742 + 117187722 117187762 41 GCCTCCCCACCAGCGCTCTTCTCGGGCTTATCAGGCAGCCT GCCTCCCCACCAGCGCTCTTCTCAGGCTTATCAGGCAGCCT < 41bp 0.824989656495418 0.614744397708202 0.3281376 0.094717145 prediction 0.420490517574432 Functional Loss - RNFT2 ENSG00000135119 CDS Human protein_coding chr12:117187742 chr12:117187745 synonymous SNV . 0 24 hm5C_associated_SNPs_89641 0 0 0 0 1 RNFT2 chr12:117187646 3'AG 117187646 Downstream 100bp
chrX 134987535 134987535 1 + G A BLCA 134987532 + 134987512 134987552 41 GCTGCAGCTGGTATTCCATCCATGAGTACCAGGGATCTGCG GCTGCAGCTGGTATTCCATCCATAAGTACCAGGGATCTGCG < 41bp 0.710242241283452 0.466732991363598 0.0439772 0.042667598 prediction 0.420484482566905 Functional Loss - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134987532 chrX:134987535 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_89645 0 0 1 0 1 SAGE1 chrX:134987551 5'GT 134987551 Upstream 17bp
chr11 124502084 124502084 1 + C T ESCA 124502081 + 124502061 124502101 41 AACCCTTGGTAGATACTCACCTGCAGCACTTGAAGTCTCCA AACCCTTGGTAGATACTCACCTGTAGCACTTGAAGTCTCCA < 41bp 0.710240016063961 0.489360496370239 0.12531844 0.11802846 prediction 0.420480032127923 Functional Loss - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502081 chr11:124502084 stopgain 0.970 1 24 hm5C_associated_SNPs_89646 0 0 1 12 1 TBRG1 chr11:124501989 3'AG 124501989 Downstream 96bp
chr20 61936783 61936783 1 + G A COAD 61936780 + 61936760 61936800 41 CCTACCCAGGGGACTCGGAACAGGAGGTGATACTGACCACC CCTACCCAGGGGACTCGGAACAGAAGGTGATACTGACCACC < 41bp 0.761754620961666 0.551519491837225 0.9368129 0.8866489 prediction 0.420470258248881 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61936780 chr20:61936783 nonsynonymous SNV 0.963 3 24 hm5C_associated_SNPs_89647 0 0 0 0 1 COL20A1 chr20:61936769 3'AG 61936769 Downstream 15bp
chr11 558884 558884 1 - C A rs2061586 558886 - 558866 558906 41 GCCAGACACCACGCCCCACCCCGCACCGGTGGTCTGCTCTG GCCAGACACCACGCCCCACCCCTCACCGGTGGTCTGCTCTG < 41bp 0.710233216566444 0.361182860503271 0.10260877 0.0269548 prediction 0.420466433132889 Functional Loss - LMNTD2 ENSG00000185522 CDS Human protein_coding chr11:558886 chr11:558884 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_89649 0 0 0 0 2 LMNTD2 chr11:558856 5'GT 558856 Upstream 29bp
chr11 558884 558884 1 - C A rs2061586 558886 - 558866 558906 41 GCCAGACACCACGCCCCACCCCGCACCGGTGGTCTGCTCTG GCCAGACACCACGCCCCACCCCTCACCGGTGGTCTGCTCTG < 41bp 0.710233216566444 0.361182860503271 0.10260877 0.0269548 prediction 0.420466433132889 Functional Loss - LMNTD2 ENSG00000185522 CDS Human protein_coding chr11:558886 chr11:558884 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_89649 0 0 0 0 2 LMNTD2 chr11:558979 3'AG 558979 Downstream 96bp
chr22 19504062 19504062 1 + C T UCEC 19504059 + 19504039 19504079 41 CGACTCCATAGACAAAGAACCGGCGCTGCAAACTGCTGCCC CGACTCCATAGACAAAGAACCGGTGCTGCAAACTGCTGCCC < 41bp 0.713731636319889 0.503499628371699 0.6854631 0.9161612 prediction 0.420464015896381 Functional Loss - CDC45 ENSG00000093009 CDS Human protein_coding chr22:19504059 chr22:19504062 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_89651 0 0 1 0 1 CDC45 chr22:19504050 3'AG 19504050 Downstream 13bp
chr10 111985946 111985946 1 + G C rs35741140 111985945 + 111985925 111985965 41 GAGAAGGGAGTGCGGAGAGGCGCCGGTCGCCACCCGCGGTG GAGAAGGGAGTGCGGAGAGGCCCCGGTCGCCACCCGCGGTG < 41bp 0.880179084463531 0.669950306515381 0.44183132 0.29075855 prediction 0.420457555896301 Functional Loss - MXI1 ENSG00000119950 UTR5 Human protein_coding chr10:111985945 chr10:111985946 . . 0 22 hm5C_associated_SNPs_89656 0 0 1 0 1 MXI1 chr10:111986041 5'GT 111986041 Upstream 96bp
chr15 91026675 91026675 1 + C T COAD 91026672 + 91026652 91026692 41 CTTTGACATCATTGACCTGTCAGCAGGAGGCCAGCTTACCA CTTTGACATCATTGACCTGTCAGTAGGAGGCCAGCTTACCA < 41bp 0.76332263955672 0.553093965804797 0.39250657 0.16153619 prediction 0.420457347503848 Functional Loss - IQGAP1 ENSG00000140575 CDS Human protein_coding chr15:91026672 chr15:91026675 nonsynonymous SNV 0.917 1 24 hm5C_associated_SNPs_89657 0 0 1 0 1 IQGAP1 chr15:91026593 3'AG 91026593 Downstream 83bp
chr19 53987047 53987047 1 + A T BLCA 53987043 + 53987023 53987063 41 TTGGTATGTGAGGAAGAAACCTGGAAGAGGAAGAGGAAAGC TTGGTATGTGAGGAAGAAACCTGGTAGAGGAAGAGGAAAGC < 41bp 0.812521823420701 0.602293288917258 0.14837837 0.15687677 prediction 0.420457069006885 Functional Loss - ZNF813 ENSG00000198346 UTR5 Human protein_coding chr19:53987043 chr19:53987047 . . 0 25 hm5C_associated_SNPs_89658 0 0 0 0 1 ZNF813 chr19:53987091 5'GT 53987091 Upstream 45bp
chr6 118635199 118635199 1 + A T UCEC 118635195 + 118635175 118635215 41 TGTTGTGTTTTTTTAGTTTTCAGGACTTTATCTCCTGTCTT TGTTGTGTTTTTTTAGTTTTCAGGTCTTTATCTCCTGTCTT < 41bp 0.710228511923655 0.417162076558899 0.6507872 0.44068125 prediction 0.420457023847311 Functional Loss - SLC35F1 ENSG00000196376 CDS Human protein_coding chr6:118635195 chr6:118635199 synonymous SNV . 0 25 hm5C_associated_SNPs_89659 0 0 1 0 1 SLC35F1 chr6:118635191 3'AG 118635191 Downstream 9bp
chr12 6943202 6943202 1 + C T COAD 6943199 + 6943179 6943219 41 CAGCCGAGTGTGGGGTGCTGCTGCAGCTGGCTAAGGTAGGA CAGCCGAGTGTGGGGTGCTGCTGTAGCTGGCTAAGGTAGGA < 41bp 0.749943109746994 0.539714681268251 0.8131983 0.39208722 prediction 0.420456856957486 Functional Loss - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6943199 chr12:6943202 stopgain 1.000 1 24 hm5C_associated_SNPs_89660 0 0 1 0 1 P3H3 chr12:6943213 5'GT 6943213 Upstream 12bp
chr10 99517436 99517436 1 + G T LIHC 99517433 + 99517413 99517453 41 TTGTGGAAACAGCTTCTGCTCTCGATGCTGCTCCTTCAAGG TTGTGGAAACAGCTTCTGCTCTCTATGCTGCTCCTTCAAGG < 41bp 0.928874599817924 0.718647245234313 0.4255093 0.8303214 prediction 0.420454709167222 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99517433 chr10:99517436 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_89661 0 0 0 6 2 ZFYVE27 chr10:99517399 3'AG 99517399 Downstream 38bp
chr10 99517436 99517436 1 + G T LIHC 99517433 + 99517413 99517453 41 TTGTGGAAACAGCTTCTGCTCTCGATGCTGCTCCTTCAAGG TTGTGGAAACAGCTTCTGCTCTCTATGCTGCTCCTTCAAGG < 41bp 0.928874599817924 0.718647245234313 0.4255093 0.8303214 prediction 0.420454709167222 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99517433 chr10:99517436 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_89661 0 0 0 6 2 ZFYVE27 chr10:99517480 5'GT 99517480 Upstream 45bp
chr17 56270475 56270475 1 + C T UCEC 56270472 + 56270452 56270492 41 AAGTTGCTGGTGGATGCTGCCTACAATTGGACCCAGAAGAG AAGTTGCTGGTGGATGCTGCCTATAATTGGACCCAGAAGAG < 41bp 0.728342718071771 0.518116880731487 0.04706931 0.025429726 prediction 0.420451674680568 Functional Loss - EPX ENSG00000121053 CDS Human protein_coding chr17:56270472 chr17:56270475 synonymous SNV . 0 24 hm5C_associated_SNPs_89662 0 0 0 0 2 EPX chr17:56270399 3'AG 56270399 Downstream 77bp
chr17 56270475 56270475 1 + C T UCEC 56270472 + 56270452 56270492 41 AAGTTGCTGGTGGATGCTGCCTACAATTGGACCCAGAAGAG AAGTTGCTGGTGGATGCTGCCTATAATTGGACCCAGAAGAG < 41bp 0.728342718071771 0.518116880731487 0.04706931 0.025429726 prediction 0.420451674680568 Functional Loss - EPX ENSG00000121053 CDS Human protein_coding chr17:56270472 chr17:56270475 synonymous SNV . 0 24 hm5C_associated_SNPs_89662 0 0 0 0 2 EPX chr17:56270492 5'GT 56270492 Upstream 18bp
chr4 134076151 134076151 1 + G A STAD 134076148 + 134076128 134076168 41 GTGAACAGGGAGATAGTGATCATGATGCCACCAACCGTGCC GTGAACAGGGAGATAGTGATCATAATGCCACCAACCGTGCC < 41bp 0.710225769362108 0.475020739074442 0.36353827 0.13610241 prediction 0.420451538724216 Functional Loss - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134076148 chr4:134076151 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_89663 0 0 1 0 2 PCDH10 chr4:134076072 3'AG 134076072 Downstream 80bp
chr4 134076151 134076151 1 + G A STAD 134076148 + 134076128 134076168 41 GTGAACAGGGAGATAGTGATCATGATGCCACCAACCGTGCC GTGAACAGGGAGATAGTGATCATAATGCCACCAACCGTGCC < 41bp 0.710225769362108 0.475020739074442 0.36353827 0.13610241 prediction 0.420451538724216 Functional Loss - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134076148 chr4:134076151 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_89663 0 0 1 0 2 PCDH10 chr4:134076178 5'GT 134076178 Upstream 28bp
chr7 48146994 48146994 1 + C T rs116578494 48146992 + 48146972 48147012 41 GATGGGGCTCTCTGCTCCTACACGGAGAAGGACAAGCAGGC GATGGGGCTCTCTGCTCCTACATGGAGAAGGACAAGCAGGC < 41bp 0.848120943401171 0.637895188428119 0.40524113 0.82809174 prediction 0.420451509946105 Functional Loss - UPP1 ENSG00000183696 CDS Human protein_coding chr7:48146992 chr7:48146994 nonsynonymous SNV 0.928 3 23 hm5C_associated_SNPs_89664 0 0 1 0 1 UPP1 chr7:48146958 3'AG 48146958 Downstream 37bp
chr7 128489420 128489420 1 + G T CESC 128489417 + 128489397 128489437 41 GCCCTCGAATCCAGATTGGGCAGGAGACGGTGATCACGGTG GCCCTCGAATCCAGATTGGGCAGTAGACGGTGATCACGGTG < 41bp 0.710224525606842 0.322757661830782 0.76778895 0.17269453 prediction 0.420449051213685 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128489417 chr7:128489420 stopgain 1.000 1 24 hm5C_associated_SNPs_89666 0 0 1 0 1 FLNC chr7:128489385 3'AG 128489385 Downstream 36bp
chr4 141461344 141461344 1 + C T COAD 141461342 + 141461322 141461362 41 CTTTGGAATCTTCTAATGCCCACGAAGAAGTTAAACGCTAG CTTTGGAATCTTCTAATGCCCATGAAGAAGTTAAACGCTAG < 41bp 0.856182612662064 0.645959716557735 0.27742106 0.2981681 prediction 0.420445792208658 Functional Loss - ELMOD2 ENSG00000179387 CDS Human protein_coding chr4:141461342 chr4:141461344 nonsynonymous SNV 0.813 2 23 hm5C_associated_SNPs_89668 0 0 1 0 1 ELMOD2 chr4:141461322 3'AG 141461322 Downstream 23bp
chr17 2275737 2275737 1 + G A UCEC 2275734 + 2275714 2275754 41 GACCGGCCCCCGGGGGCCTCCGCGGGCCTCACCAAGGACGT GACCGGCCCCCGGGGGCCTCCGCAGGCCTCACCAAGGACGT < 41bp 0.822660029963574 0.612441995021781 0.9062531 0.87405396 prediction 0.420436069883586 Functional Loss - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2275734 chr17:2275737 synonymous SNV . 0 24 hm5C_associated_SNPs_89675 0 0 1 0 1 SGSM2 chr17:2275782 5'GT 2275782 Upstream 46bp
chr5 126732300 126732300 1 + C T rs34649270 126732297 + 126732277 126732317 41 AATGGGGCTCTGTGCAACCCCATCACCGGGGCTTGCCACTG AATGGGGCTCTGTGCAACCCCATTACCGGGGCTTGCCACTG < 41bp 0.738508118449595 0.528291223597678 0.08393067 0.04582116 prediction 0.420433789703834 Functional Loss - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126732297 chr5:126732300 synonymous SNV . 0 24 hm5C_associated_SNPs_89676 2 0 0 0 1 MEGF10 chr5:126732224 3'AG 126732224 Downstream 77bp
chr16 8875227 8875227 1 + G A SKCM 8875224 + 8875204 8875244 41 TTCCGTCCCACGCTGGTCTTCAGGGATCACCACGCTCACCT TTCCGTCCCACGCTGGTCTTCAGAGATCACCACGCTCACCT < 41bp 0.790935521229987 0.580724443375463 0.92583275 0.78387004 prediction 0.420422155709048 Functional Loss - ABAT ENSG00000183044 CDS Human protein_coding chr16:8875224 chr16:8875227 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_89679 0 0 0 0 1 ABAT chr16:8875166 3'AG 8875166 Downstream 62bp
chr1 3669281 3669281 1 + G A rs114328241 3669278 + 3669258 3669298 41 GAGCATGGCCAGCCGGGACGCCCGGTGCCCAGAATGGAAAC GAGCATGGCCAGCCGGGACGCCCAGTGCCCAGAATGGAAAC < 41bp 0.808155932311885 0.597948587623534 0.27022573 0.082954556 prediction 0.420414689376703 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3669278 chr1:3669281 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_89682 0 0 0 0 1 CCDC27 chr1:3669363 5'GT 3669363 Upstream 83bp
chr12 21680686 21680686 1 + G T COAD 21680684 + 21680664 21680704 41 GTCGCCGCTTCATCTCCGACCAGAGCCGGAGAAAGGACCTC GTCGCCGCTTCATCTCCGACCATAGCCGGAGAAAGGACCTC < 41bp 0.710206777553314 0.342237590086495 0.86811155 0.17299786 prediction 0.420413555106628 Functional Loss - SPX ENSG00000134548 CDS Human protein_coding chr12:21680684 chr12:21680686 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_89683 0 0 0 0 2 SPX chr12:21680661 3'AG 21680661 Downstream 26bp
chr12 21680686 21680686 1 + G T COAD 21680684 + 21680664 21680704 41 GTCGCCGCTTCATCTCCGACCAGAGCCGGAGAAAGGACCTC GTCGCCGCTTCATCTCCGACCATAGCCGGAGAAAGGACCTC < 41bp 0.710206777553314 0.342237590086495 0.86811155 0.17299786 prediction 0.420413555106628 Functional Loss - SPX ENSG00000134548 CDS Human protein_coding chr12:21680684 chr12:21680686 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_89683 0 0 0 0 2 SPX chr12:21680723 5'GT 21680723 Upstream 38bp
chr7 43483867 43483867 1 + G A THCA 43483864 + 43483844 43483884 41 AGCCTGAGTCAGCCCAAATTCAGGACAGCCCCATGAACAAC AGCCTGAGTCAGCCCAAATTCAGAACAGCCCCATGAACAAC < 41bp 0.778475795736813 0.568272015829901 0.7887837 0.32462335 prediction 0.420407559813824 Functional Loss - HECW1 ENSG00000002746 CDS Human protein_coding chr7:43483864 chr7:43483867 nonsynonymous SNV 0.841 0 24 hm5C_associated_SNPs_89686 0 0 0 0 1 HECW1 chr7:43483817 3'AG 43483817 Downstream 51bp
chr2 136479529 136479529 1 + C T COAD 136479526 + 136479506 136479546 41 ATCCATTACTTGGCCAGCCACTGCAGTACAATCCTCCTGCT ATCCATTACTTGGCCAGCCACTGTAGTACAATCCTCCTGCT < 41bp 0.782793210577885 0.572590781764502 0.39588577 0.39893863 prediction 0.420404857626765 Functional Loss - R3HDM1 ENSG00000048991 CDS Human protein_coding chr2:136479526 chr2:136479529 stopgain 0.978 1 24 hm5C_associated_SNPs_89688 0 0 1 0 2 R3HDM1 chr2:136479494 3'AG 136479494 Downstream 36bp
chr2 136479529 136479529 1 + C T COAD 136479526 + 136479506 136479546 41 ATCCATTACTTGGCCAGCCACTGCAGTACAATCCTCCTGCT ATCCATTACTTGGCCAGCCACTGTAGTACAATCCTCCTGCT < 41bp 0.782793210577885 0.572590781764502 0.39588577 0.39893863 prediction 0.420404857626765 Functional Loss - R3HDM1 ENSG00000048991 CDS Human protein_coding chr2:136479526 chr2:136479529 stopgain 0.978 1 24 hm5C_associated_SNPs_89688 0 0 1 0 2 R3HDM1 chr2:136479576 5'GT 136479576 Upstream 48bp
chr4 72263332 72263332 1 + A T LUAD 72263328 + 72263308 72263348 41 ACCCATAGGAATCTGACTTCCTCCAGTCTGAATGACATTTC ACCCATAGGAATCTGACTTCCTCCTGTCTGAATGACATTTC < 41bp 0.710202193082388 0.361113694359404 0.92427623 0.048066616 prediction 0.420404386164776 Functional Loss - SLC4A4 ENSG00000080493 CDS Human protein_coding chr4:72263328 chr4:72263332 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_89689 0 0 0 0 2 SLC4A4 chr4:72263294 3'AG 72263294 Downstream 39bp
chr4 72263332 72263332 1 + A T LUAD 72263328 + 72263308 72263348 41 ACCCATAGGAATCTGACTTCCTCCAGTCTGAATGACATTTC ACCCATAGGAATCTGACTTCCTCCTGTCTGAATGACATTTC < 41bp 0.710202193082388 0.361113694359404 0.92427623 0.048066616 prediction 0.420404386164776 Functional Loss - SLC4A4 ENSG00000080493 CDS Human protein_coding chr4:72263328 chr4:72263332 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_89689 0 0 0 0 2 SLC4A4 chr4:72263370 5'GT 72263370 Upstream 39bp
chr4 72263331 72263331 1 + C T SKCM 72263328 + 72263308 72263348 41 ACCCATAGGAATCTGACTTCCTCCAGTCTGAATGACATTTC ACCCATAGGAATCTGACTTCCTCTAGTCTGAATGACATTTC < 41bp 0.710202193082388 0.47808277310605 0.92427623 0.19953266 prediction 0.420404386164776 Functional Loss - SLC4A4 ENSG00000080493 CDS Human protein_coding chr4:72263328 chr4:72263331 synonymous SNV . 0 24 hm5C_associated_SNPs_89690 0 0 0 0 2 SLC4A4 chr4:72263294 3'AG 72263294 Downstream 38bp
chr4 72263331 72263331 1 + C T SKCM 72263328 + 72263308 72263348 41 ACCCATAGGAATCTGACTTCCTCCAGTCTGAATGACATTTC ACCCATAGGAATCTGACTTCCTCTAGTCTGAATGACATTTC < 41bp 0.710202193082388 0.47808277310605 0.92427623 0.19953266 prediction 0.420404386164776 Functional Loss - SLC4A4 ENSG00000080493 CDS Human protein_coding chr4:72263328 chr4:72263331 synonymous SNV . 0 24 hm5C_associated_SNPs_89690 0 0 0 0 2 SLC4A4 chr4:72263370 5'GT 72263370 Upstream 40bp
chr10 43622132 43622132 1 + G A SKCM 43622129 + 43622109 43622149 41 CTGTAATAATGCCCCCCTCCCTCGAGCCCTCCCTTCCACAT CTGTAATAATGCCCCCCTCCCTCAAGCCCTCCCTTCCACAT < 41bp 0.800912427156987 0.590711454773264 0.069206476 0.0056813955 prediction 0.420401944767445 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43622129 chr10:43622132 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_89692 1 0 1 0 1 RET chr10:43622170 5'GT 43622170 Upstream 39bp
chr6 43237400 43237400 1 + C T BLCA 43237398 + 43237378 43237418 41 CAGTTGGAGGAGGACAGACTCTCGGGGCACTCCCTCCCGCG CAGTTGGAGGAGGACAGACTCTTGGGGCACTCCCTCCCGCG < 41bp 0.710200700392614 0.463223348287217 0.78713715 0.71817577 prediction 0.420401400785228 Functional Loss - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43237398 chr6:43237400 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_89693 0 0 0 0 1 TTBK1 chr6:43237381 3'AG 43237381 Downstream 20bp
chr8 67049401 67049401 1 + G T OV 67049399 + 67049379 67049419 41 TCCAGGGAGTGATCAGCCAGCTGGAAGACACCTGCAAAACT TCCAGGGAGTGATCAGCCAGCTTGAAGACACCTGCAAAACT < 41bp 0.913326334100761 0.703134547601738 0.30127025 0.15983945 prediction 0.420383572998046 Functional Loss - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67049399 chr8:67049401 synonymous SNV . 0 23 hm5C_associated_SNPs_89698 0 0 0 0 2 TRIM55 chr8:67049330 3'AG 67049330 Downstream 72bp
chr8 67049401 67049401 1 + G T OV 67049399 + 67049379 67049419 41 TCCAGGGAGTGATCAGCCAGCTGGAAGACACCTGCAAAACT TCCAGGGAGTGATCAGCCAGCTTGAAGACACCTGCAAAACT < 41bp 0.913326334100761 0.703134547601738 0.30127025 0.15983945 prediction 0.420383572998046 Functional Loss - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67049399 chr8:67049401 synonymous SNV . 0 23 hm5C_associated_SNPs_89698 0 0 0 0 2 TRIM55 chr8:67049425 5'GT 67049425 Upstream 25bp
chr14 39815181 39815181 1 + T C COAD 39815180 + 39815160 39815200 41 TTCTAATTCTGGTAGACTGTCTGGACCAGCAGAACTCAGAA TTCTAATTCTGGTAGACTGTCCGGACCAGCAGAACTCAGAA < 41bp 0.819313085363041 0.60912201023692 0.14857602 0.09437445 prediction 0.420382150252241 Functional Loss - MIA2 ENSG00000150527;ENSG00000258941 CDS Human other chr14:39815180 chr14:39815181 synonymous SNV . 0 22 hm5C_associated_SNPs_89699 0 0 1 0 1 MIA2 chr14:39815108 3'AG 39815108 Downstream 74bp
chr19 35512503 35512503 1 + C T HNSC 35512500 + 35512480 35512520 41 GCGGCATTGAAGACTATTTCCACCATCTGGGTAGGGACAGA GCGGCATTGAAGACTATTTCCACTATCTGGGTAGGGACAGA < 41bp 0.774855055449797 0.564665812464823 0.028029263 0.024311483 prediction 0.42037848596995 Functional Loss - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35512500 chr19:35512503 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_89700 0 0 1 0 1 GRAMD1A chr19:35512509 5'GT 35512509 Upstream 7bp
chr10 13158340 13158340 1 + C T UCEC 13158338 + 13158318 13158358 41 ACGAGAACAGTCTCCACTGGCACGTATGTGAAGGAAGACTC ACGAGAACAGTCTCCACTGGCATGTATGTGAAGGAAGACTC < 41bp 0.710189108770257 0.43961336068762 0.41281006 0.4142528 prediction 0.420378217540514 Functional Loss - OPTN ENSG00000123240 CDS Human protein_coding chr10:13158338 chr10:13158340 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_89701 0 0 1 0 2 OPTN chr10:13158267 3'AG 13158267 Downstream 74bp
chr10 13158340 13158340 1 + C T UCEC 13158338 + 13158318 13158358 41 ACGAGAACAGTCTCCACTGGCACGTATGTGAAGGAAGACTC ACGAGAACAGTCTCCACTGGCATGTATGTGAAGGAAGACTC < 41bp 0.710189108770257 0.43961336068762 0.41281006 0.4142528 prediction 0.420378217540514 Functional Loss - OPTN ENSG00000123240 CDS Human protein_coding chr10:13158338 chr10:13158340 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_89701 0 0 1 0 2 OPTN chr10:13158340 5'GT 13158340 Upstream 1bp
chr7 72754658 72754658 1 + C T rs201318712 72754655 + 72754635 72754675 41 CACAGGCCCTGTTGCTTCTGCGCCGGCGATCAGCACCCCCT CACAGGCCCTGTTGCTTCTGCGCTGGCGATCAGCACCCCCT < 41bp 0.723584996790641 0.513397125340682 0.15710557 0.17018244 prediction 0.420375742899919 Functional Loss - FKBP6 ENSG00000077800 CDS Human protein_coding chr7:72754655 chr7:72754658 nonsynonymous SNV 0.001 4 24 hm5C_associated_SNPs_89702 0 0 0 0 1 FKBP6 chr7:72754640 3'AG 72754640 Downstream 19bp
chr3 158541305 158541305 1 + C T UCEC 158541302 + 158541282 158541322 41 TCCTGAACATCAGCTGGGAACTGCATATGGCTTGTAAGTAT TCCTGAACATCAGCTGGGAACTGTATATGGCTTGTAAGTAT < 41bp 0.769329441327145 0.559147795376622 0.103915215 0.05270955 prediction 0.420363291901046 Functional Loss - MFSD1 ENSG00000118855 CDS Human protein_coding chr3:158541302 chr3:158541305 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_89708 0 0 0 1 1 MFSD1 chr3:158541314 5'GT 158541314 Upstream 10bp
chr1 36550617 36550617 1 + G C BLCA 36550616 + 36550596 36550636 41 CCACCAATGCCCAGCTGCAGCGAGATGCTTCCCATCAGATC CCACCAATGCCCAGCTGCAGCCAGATGCTTCCCATCAGATC < 41bp 0.873473591400364 0.663295101099531 0.77906024 0.5451091 prediction 0.420356980601666 Functional Loss - TEKT2 ENSG00000092850 CDS Human protein_coding chr1:36550616 chr1:36550617 nonsynonymous SNV 0.971 4 22 hm5C_associated_SNPs_89709 0 0 0 0 1 TEKT2 chr1:36550678 5'GT 36550678 Upstream 62bp
chr9 34656902 34656902 1 + G A UCEC 34656899 + 34656879 34656919 41 GGGGCACAGTGACCCTGCAGCTGGGCTGTGAGTTGGGGAGG GGGGCACAGTGACCCTGCAGCTGAGCTGTGAGTTGGGGAGG < 41bp 0.802858973241903 0.592683448615456 0.5123841 0.3374558 prediction 0.420351049252894 Functional Loss - IL11RA ENSG00000137070;ENSG00000258728 CDS Human other chr9:34656899 chr9:34656902 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_89712 0 0 1 0 1 IL11RA chr9:34656905 5'GT 34656905 Upstream 4bp
chr22 44543790 44543790 1 + C T COAD 44543787 + 44543767 44543807 41 GACCACGCCCCGGATAAGCTCAGCGTGGTGAAGAAGGTGAG GACCACGCCCCGGATAAGCTCAGTGTGGTGAAGAAGGTGAG < 41bp 0.736198863293338 0.526027349313895 0.8780714 0.5128682 prediction 0.420343027958884 Functional Loss - PARVB ENSG00000188677 CDS Human protein_coding chr22:44543787 chr22:44543790 synonymous SNV . 0 24 hm5C_associated_SNPs_89715 0 0 1 0 2 PARVB chr22:44543741 3'AG 44543741 Downstream 50bp
chr22 44543790 44543790 1 + C T COAD 44543787 + 44543767 44543807 41 GACCACGCCCCGGATAAGCTCAGCGTGGTGAAGAAGGTGAG GACCACGCCCCGGATAAGCTCAGTGTGGTGAAGAAGGTGAG < 41bp 0.736198863293338 0.526027349313895 0.8780714 0.5128682 prediction 0.420343027958884 Functional Loss - PARVB ENSG00000188677 CDS Human protein_coding chr22:44543787 chr22:44543790 synonymous SNV . 0 24 hm5C_associated_SNPs_89715 0 0 1 0 2 PARVB chr22:44543802 5'GT 44543802 Upstream 13bp
chr17 33324773 33324773 1 + C T LUSC 33324770 + 33324750 33324790 41 TCCTCAGACCTCTGTGTGAGCGGCGGAAGTTTCTTCATGAC TCCTCAGACCTCTGTGTGAGCGGTGGAAGTTTCTTCATGAC < 41bp 0.712951377039883 0.502786786913945 0.7944548 0.4229252 prediction 0.420329180251877 Functional Loss - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33324770 chr17:33324773 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_89719 0 0 1 0 2 LIG3 chr17:33324757 3'AG 33324757 Downstream 17bp
chr17 33324773 33324773 1 + C T LUSC 33324770 + 33324750 33324790 41 TCCTCAGACCTCTGTGTGAGCGGCGGAAGTTTCTTCATGAC TCCTCAGACCTCTGTGTGAGCGGTGGAAGTTTCTTCATGAC < 41bp 0.712951377039883 0.502786786913945 0.7944548 0.4229252 prediction 0.420329180251877 Functional Loss - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33324770 chr17:33324773 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_89719 0 0 1 0 2 LIG3 chr17:33324844 5'GT 33324844 Upstream 72bp
chr19 45561135 45561135 1 + G T STAD 45561131 + 45561111 45561151 41 GAGGAGGAGAGCAACTCGGACGAAGATGAGGTCATCCCCGA GAGGAGGAGAGCAACTCGGACGAATATGAGGTCATCCCCGA < 41bp 0.711772120890321 0.501609169065144 0.6013706 0.5920052 prediction 0.420325903650353 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45561131 chr19:45561135 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_89720 0 0 1 0 2 CLASRP chr19:45561140 5'GT 45561140 Upstream 6bp
chr19 45561135 45561135 1 + G T STAD 45561131 + 45561111 45561151 41 GAGGAGGAGAGCAACTCGGACGAAGATGAGGTCATCCCCGA GAGGAGGAGAGCAACTCGGACGAATATGAGGTCATCCCCGA < 41bp 0.711772120890321 0.501609169065144 0.6013706 0.5920052 prediction 0.420325903650353 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45561131 chr19:45561135 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_89720 0 0 1 0 2 CLASRP chr19:45561156 5'GT 45561156 Upstream 22bp
chr20 44574995 44574995 1 + G A LUAD 44574992 + 44574972 44575012 41 GCCAGTACTGTTCTGCCTTCCCCGACACAGACGGCTACTTT GCCAGTACTGTTCTGCCTTCCCCAACACAGACGGCTACTTT < 41bp 0.710160341048274 0.469687786177474 0.035726875 0.06989235 prediction 0.420320682096548 Functional Loss - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44574992 chr20:44574995 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_89722 0 0 1 0 1 PCIF1 chr20:44575023 5'GT 44575023 Upstream 29bp
chr19 15752390 15752390 1 + G A SKCM 15752387 + 15752367 15752407 41 CTCCGGTGTTTCCCGCAACCCCCGAAACGGAATTGGTTCTT CTCCGGTGTTTCCCGCAACCCCCAAAACGGAATTGGTTCTT < 41bp 0.710156138793262 0.472600221624052 0.04479134 0.06958988 prediction 0.420312277586524 Functional Loss - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15752387 chr19:15752390 synonymous SNV . 0 24 hm5C_associated_SNPs_89725 0 0 1 0 1 CYP4F3 chr19:15752423 5'GT 15752423 Upstream 34bp
chr10 104629931 104629931 1 + G T SKCM 104629927 + 104629907 104629947 41 AGGCCGGTCCCCAAGCACATCCGGGAAGCCTTGCAAAATGT AGGCCGGTCCCCAAGCACATCCGGTAAGCCTTGCAAAATGT < 41bp 0.735312329201823 0.525157394232031 0.32929218 0.22343284 prediction 0.420309869939584 Functional Loss - AS3MT ENSG00000214435 CDS Human protein_coding chr10:104629927 chr10:104629931 stopgain 0.965 0 25 hm5C_associated_SNPs_89727 0 0 0 0 2 AS3MT chr10:104629841 3'AG 104629841 Downstream 91bp
chr10 104629931 104629931 1 + G T SKCM 104629927 + 104629907 104629947 41 AGGCCGGTCCCCAAGCACATCCGGGAAGCCTTGCAAAATGT AGGCCGGTCCCCAAGCACATCCGGTAAGCCTTGCAAAATGT < 41bp 0.735312329201823 0.525157394232031 0.32929218 0.22343284 prediction 0.420309869939584 Functional Loss - AS3MT ENSG00000214435 CDS Human protein_coding chr10:104629927 chr10:104629931 stopgain 0.965 0 25 hm5C_associated_SNPs_89727 0 0 0 0 2 AS3MT chr10:104629968 5'GT 104629968 Upstream 38bp
chr7 141722126 141722126 1 + C T SKCM 141722124 + 141722104 141722144 41 CCAGTTCTTGCAGCTCTCCACTCGACTGCCTAGCACTAACG CCAGTTCTTGCAGCTCTCCACTTGACTGCCTAGCACTAACG < 41bp 0.710153330622648 0.419563190787582 0.3968047 0.10521671 prediction 0.420306661245297 Functional Loss - MGAM ENSG00000257335 CDS Human protein_coding chr7:141722124 chr7:141722126 stopgain 0.212 0 23 hm5C_associated_SNPs_89728 0 0 0 0 1 MGAM chr7:141722068 3'AG 141722068 Downstream 59bp
chr4 62383199 62383199 1 + C T SARC 62383197 + 62383177 62383217 41 GTGGAGCTACCAGAGGAGTTCGCGGTCCAGGTGCCCAAGGA GTGGAGCTACCAGAGGAGTTCGTGGTCCAGGTGCCCAAGGA < 41bp 0.724733247846278 0.514580470950077 0.8946663 0.8558785 prediction 0.420305553792402 Functional Loss - ADGRL3 ENSG00000150471 CDS Human protein_coding chr4:62383197 chr4:62383199 synonymous SNV . 0 23 hm5C_associated_SNPs_89729 0 0 0 0 1 ADGRL3 chr4:62383236 5'GT 62383236 Upstream 38bp
chrX 65390434 65390434 1 + T C HNSC 65390433 + 65390413 65390453 41 ATGGAGTCAGGCCACCTCCTCTGGGCTCTGCTGTTCATGCA ATGGAGTCAGGCCACCTCCTCCGGGCTCTGCTGTTCATGCA < 41bp 0.710152512437401 0.48147147217863 0.70762247 0.8914222 prediction 0.420305024874803 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65390433 chrX:65390434 nonsynonymous SNV 0.881 1 22 hm5C_associated_SNPs_89730 0 0 1 0 1 HEPH chrX:65390400 3'AG 65390400 Downstream 35bp
chr1 101190191 101190191 1 + A T BRCA 101190187 + 101190167 101190207 41 TTTGCCCTTTCAGTATCACCCAAGAATACAGTTATTTCTGT TTTGCCCTTTCAGTATCACCCAAGTATACAGTTATTTCTGT < 41bp 0.710152507441614 0.400898454237272 0.3012612 0.32204264 prediction 0.420305014883228 Functional Loss - VCAM1 ENSG00000162692 CDS Human protein_coding chr1:101190187 chr1:101190191 nonsynonymous SNV 0.805 3 25 hm5C_associated_SNPs_89731 0 0 0 0 1 VCAM1 chr1:101190180 3'AG 101190180 Downstream 12bp
chr1 101190190 101190190 1 + G T READ 101190187 + 101190167 101190207 41 TTTGCCCTTTCAGTATCACCCAAGAATACAGTTATTTCTGT TTTGCCCTTTCAGTATCACCCAATAATACAGTTATTTCTGT < 41bp 0.710152507441614 0.331151723857569 0.3012612 0.4109982 prediction 0.420305014883228 Functional Loss - VCAM1 ENSG00000162692 CDS Human protein_coding chr1:101190187 chr1:101190190 nonsynonymous SNV 0.817 3 24 hm5C_associated_SNPs_89732 0 0 0 0 1 VCAM1 chr1:101190180 3'AG 101190180 Downstream 11bp
chr11 65734003 65734003 1 + C T COAD 65734000 + 65733980 65734020 41 ACAGTGGGGCCCCGGCTGGCCTCCGAATACCTCACGCCTGA ACAGTGGGGCCCCGGCTGGCCTCTGAATACCTCACGCCTGA < 41bp 0.730787436940846 0.520635358038771 0.32477066 0.094982445 prediction 0.42030415780415 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65734000 chr11:65734003 synonymous SNV . 0 24 hm5C_associated_SNPs_89733 0 0 1 2 1 SART1 chr11:65734027 5'GT 65734027 Upstream 25bp
chr1 39988745 39988745 1 + G A SKCM 39988742 + 39988722 39988762 41 AGGGGGAGTGCTCCTTCCCGCTGGACTCCTGCATGAACGCC AGGGGGAGTGCTCCTTCCCGCTGAACTCCTGCATGAACGCC < 41bp 0.823891477021628 0.613742429842246 0.15630698 0.06815699 prediction 0.420298094358764 Functional Loss - BMP8A ENSG00000183682 CDS Human protein_coding chr1:39988742 chr1:39988745 nonsynonymous SNV 0.459 1 24 hm5C_associated_SNPs_89735 0 0 0 0 2 BMP8A chr1:39988679 3'AG 39988679 Downstream 67bp
chr1 39988745 39988745 1 + G A SKCM 39988742 + 39988722 39988762 41 AGGGGGAGTGCTCCTTCCCGCTGGACTCCTGCATGAACGCC AGGGGGAGTGCTCCTTCCCGCTGAACTCCTGCATGAACGCC < 41bp 0.823891477021628 0.613742429842246 0.15630698 0.06815699 prediction 0.420298094358764 Functional Loss - BMP8A ENSG00000183682 CDS Human protein_coding chr1:39988742 chr1:39988745 nonsynonymous SNV 0.459 1 24 hm5C_associated_SNPs_89735 0 0 0 0 2 BMP8A chr1:39988789 5'GT 39988789 Upstream 45bp
chr7 30811168 30811168 1 + G T UCEC 30811166 + 30811146 30811186 41 TTGGTCAGGGAGTTCCTCAGCAGAAAGGTAACGGCTCGCCC TTGGTCAGGGAGTTCCTCAGCATAAAGGTAACGGCTCGCCC < 41bp 0.710146530867963 0.355184660139772 0.43363923 0.1828227 prediction 0.420293061735926 Functional Loss - MINDY4 ENSG00000106125 CDS Human protein_coding chr7:30811166 chr7:30811168 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_89736 0 0 1 0 1 MINDY4 chr7:30811172 5'GT 30811172 Upstream 5bp
chr11 63141230 63141230 1 + G T LUSC 63141226 + 63141206 63141246 41 CTGCTCACTACGCTTCTTGTCTGGGATTGCTGCAATGAGCC CTGCTCACTACGCTTCTTGTCTGGTATTGCTGCAATGAGCC < 41bp 0.725164260283467 0.515019133529099 0.17046207 0.104204744 prediction 0.420290253508736 Functional Loss - SLC22A9 ENSG00000149742 CDS Human protein_coding chr11:63141226 chr11:63141230 synonymous SNV . 0 25 hm5C_associated_SNPs_89737 0 0 0 0 1 SLC22A9 chr11:63141270 5'GT 63141270 Upstream 41bp
chr17 55055575 55055575 1 + C T COAD 55055573 + 55055553 55055593 41 GCGGTGGTTGCTGCTGCTGCCGCTGCTGCTGGGCCTGAACG GCGGTGGTTGCTGCTGCTGCCGTTGCTGCTGGGCCTGAACG < 41bp 0.710143513971436 0.477789717045605 0.2788825 0.097717404 prediction 0.420287027942873 Functional Loss - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55055573 chr17:55055575 synonymous SNV . 0 23 hm5C_associated_SNPs_89738 0 0 1 0 1 SCPEP1 chr17:55055596 5'GT 55055596 Upstream 22bp
chr1 233490632 233490632 1 + G T COAD 233490629 + 233490609 233490649 41 GTCCATCGTTTGCCTTAATTCTCGAACAGTTGACTGCTATT GTCCATCGTTTGCCTTAATTCTCTAACAGTTGACTGCTATT < 41bp 0.710142696666472 0.328132793415985 0.89808095 0.94091517 prediction 0.420285393332945 Functional Loss - MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233490629 chr1:233490632 stopgain 0.591 0 24 hm5C_associated_SNPs_89740 0 0 1 0 1 MAP3K21 chr1:233490582 3'AG 233490582 Downstream 51bp
chr11 64950658 64950658 1 + G T UCEC 64950656 + 64950636 64950676 41 CTACCCGCACAGACATCTGCCAGGGAGCACTGGGTAGGCCC CTACCCGCACAGACATCTGCCATGGAGCACTGGGTAGGCCC < 41bp 0.710138962145583 0.344760464961894 0.91295946 0.34163845 prediction 0.420277924291165 Functional Loss - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64950656 chr11:64950658 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_89741 0 0 1 0 2 CAPN1 chr11:64950599 3'AG 64950599 Downstream 60bp
chr11 64950658 64950658 1 + G T UCEC 64950656 + 64950636 64950676 41 CTACCCGCACAGACATCTGCCAGGGAGCACTGGGTAGGCCC CTACCCGCACAGACATCTGCCATGGAGCACTGGGTAGGCCC < 41bp 0.710138962145583 0.344760464961894 0.91295946 0.34163845 prediction 0.420277924291165 Functional Loss - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64950656 chr11:64950658 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_89741 0 0 1 0 2 CAPN1 chr11:64950668 5'GT 64950668 Upstream 11bp
chr11 1094678 1094678 1 + C T COAD 1094676 + 1094656 1094696 41 CTCTCACAGGCACCCCCACTCGCGGTACCACGACCGGGTCA CTCTCACAGGCACCCCCACTCGTGGTACCACGACCGGGTCA < 41bp 0.769371589374477 0.559233724372082 0.92102134 0.9341414 prediction 0.420275730004791 Functional Loss - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1094676 chr11:1094678 synonymous SNV . 0 23 hm5C_associated_SNPs_89742 0 0 0 0 1 MUC2 chr11:1094665 3'AG 1094665 Downstream 14bp
chr6 132190591 132190591 1 + G A BLCA 132190588 + 132190568 132190608 41 AGTTATCTATGGACCTGCAGCTCGATTGAGACCCTCTGATG AGTTATCTATGGACCTGCAGCTCAATTGAGACCCTCTGATG < 41bp 0.710137627166851 0.472020361426436 0.17952052 0.18121082 prediction 0.420275254333702 Functional Loss - ENPP1 ENSG00000197594 CDS Human protein_coding chr6:132190588 chr6:132190591 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_89743 0 0 0 0 2 ENPP1 chr6:132190498 3'AG 132190498 Downstream 94bp
chr6 132190591 132190591 1 + G A BLCA 132190588 + 132190568 132190608 41 AGTTATCTATGGACCTGCAGCTCGATTGAGACCCTCTGATG AGTTATCTATGGACCTGCAGCTCAATTGAGACCCTCTGATG < 41bp 0.710137627166851 0.472020361426436 0.17952052 0.18121082 prediction 0.420275254333702 Functional Loss - ENPP1 ENSG00000197594 CDS Human protein_coding chr6:132190588 chr6:132190591 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_89743 0 0 0 0 2 ENPP1 chr6:132190629 5'GT 132190629 Upstream 39bp
chr6 132190590 132190590 1 + C T COAD 132190588 + 132190568 132190608 41 AGTTATCTATGGACCTGCAGCTCGATTGAGACCCTCTGATG AGTTATCTATGGACCTGCAGCTTGATTGAGACCCTCTGATG < 41bp 0.710137627166851 0.412728733512411 0.17952052 0.16081375 prediction 0.420275254333702 Functional Loss - ENPP1 ENSG00000197594 CDS Human protein_coding chr6:132190588 chr6:132190590 stopgain 1.000 1 23 hm5C_associated_SNPs_89744 0 0 0 0 2 ENPP1 chr6:132190498 3'AG 132190498 Downstream 93bp
chr6 132190590 132190590 1 + C T COAD 132190588 + 132190568 132190608 41 AGTTATCTATGGACCTGCAGCTCGATTGAGACCCTCTGATG AGTTATCTATGGACCTGCAGCTTGATTGAGACCCTCTGATG < 41bp 0.710137627166851 0.412728733512411 0.17952052 0.16081375 prediction 0.420275254333702 Functional Loss - ENPP1 ENSG00000197594 CDS Human protein_coding chr6:132190588 chr6:132190590 stopgain 1.000 1 23 hm5C_associated_SNPs_89744 0 0 0 0 2 ENPP1 chr6:132190629 5'GT 132190629 Upstream 40bp
chr7 101183213 101183213 1 + G A UCEC 101183210 + 101183190 101183230 41 CAGCAGAACGGCCCTCCAGCCCGGACAACGACCTGCCAGCC CAGCAGAACGGCCCTCCAGCCCGAACAACGACCTGCCAGCC < 41bp 0.710136637172708 0.464362577767606 0.83847773 0.33166522 prediction 0.420273274345416 Functional Loss - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101183210 chr7:101183213 nonsynonymous SNV 0.229 1 24 hm5C_associated_SNPs_89746 0 0 0 0 1 COL26A1 chr7:101183174 3'AG 101183174 Downstream 40bp
chr16 1741891 1741891 1 + C T UCEC 1741889 + 1741869 1741909 41 CGAATCAACCCCCGTGCAGACTCGACAGCACCTGAACCCAC CGAATCAACCCCCGTGCAGACTTGACAGCACCTGAACCCAC < 41bp 0.880413602261741 0.670279004324903 0.10067773 0.016192019 prediction 0.420269195873676 Functional Loss - JPT2 ENSG00000206053 CDS Human protein_coding chr16:1741889 chr16:1741891 stopgain 0.848 0 23 hm5C_associated_SNPs_89747 0 0 1 0 2 JPT2 chr16:1741844 3'AG 1741844 Downstream 48bp
chr16 1741891 1741891 1 + C T UCEC 1741889 + 1741869 1741909 41 CGAATCAACCCCCGTGCAGACTCGACAGCACCTGAACCCAC CGAATCAACCCCCGTGCAGACTTGACAGCACCTGAACCCAC < 41bp 0.880413602261741 0.670279004324903 0.10067773 0.016192019 prediction 0.420269195873676 Functional Loss - JPT2 ENSG00000206053 CDS Human protein_coding chr16:1741889 chr16:1741891 stopgain 0.848 0 23 hm5C_associated_SNPs_89747 0 0 1 0 2 JPT2 chr16:1741986 5'GT 1741986 Upstream 96bp
chr19 36159539 36159539 1 + C T rs368559520 36159536 + 36159516 36159556 41 TGGGTGCCGCACTCTGCCGCCGCCGGTCCATGGTCCTCACG TGGGTGCCGCACTCTGCCGCCGCTGGTCCATGGTCCTCACG < 41bp 0.723818187028329 0.513685266946685 0.16617349 0.12746528 prediction 0.420265840163286 Functional Loss - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36159536 chr19:36159539 nonsynonymous SNV 0.773 4 24 hm5C_associated_SNPs_89749 0 0 0 0 1 UPK1A chr19:36159556 5'GT 36159556 Upstream 18bp
chr1 18152313 18152313 1 + C T OV 18152310 + 18152290 18152330 41 CGGTCCTCCTGGCCGACCAGCTGCAGATGTCCCTGTATGCC CGGTCCTCCTGGCCGACCAGCTGTAGATGTCCCTGTATGCC < 41bp 0.71520478545313 0.50507609777202 0.91650164 0.8346179 prediction 0.420257375362221 Functional Loss - ACTL8 ENSG00000117148 CDS Human protein_coding chr1:18152310 chr1:18152313 stopgain 0.971 0 24 hm5C_associated_SNPs_89750 0 0 0 0 1 ACTL8 chr1:18152262 3'AG 18152262 Downstream 52bp
chr16 69971036 69971036 1 + G A HNSC 69971033 + 69971013 69971053 41 GGTCTCAGGCTGCTGACTGACTGGCGTTTCACCCGAGGCGT GGTCTCAGGCTGCTGACTGACTGACGTTTCACCCGAGGCGT < 41bp 0.710124342356574 0.460281688553805 0.7038549 0.21212587 prediction 0.420248684713147 Functional Loss - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69971033 chr16:69971036 stopgain 1.000 1 24 hm5C_associated_SNPs_89752 0 0 0 0 1 WWP2 chr16:69971021 3'AG 69971021 Downstream 16bp
chr6 83835317 83835317 1 + A T STAD 83835313 + 83835293 83835333 41 TCTCCAGACATTGCACTTATCTGAACTCACAGATTCTCTCA TCTCCAGACATTGCACTTATCTGATCTCACAGATTCTCTCA < 41bp 0.710123677568813 0.385504356684489 0.2812112 0.2589003 prediction 0.420247355137627 Functional Loss - DOPEY1 ENSG00000083097 CDS Human protein_coding chr6:83835313 chr6:83835317 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_89753 0 0 0 0 1 DOPEY1 chr6:83835219 3'AG 83835219 Downstream 99bp
chr22 48972303 48972303 1 + T C DLBC 48972302 + 48972282 48972322 41 GGGACTCCGCGATGCAGCTCCTGAAGGCGCTCTGGGCACTG GGGACTCCGCGATGCAGCTCCCGAAGGCGCTCTGGGCACTG < 41bp 0.769574698974192 0.55945310758783 0.85123146 0.8560817 prediction 0.420243182772725 Functional Loss - FAM19A5 ENSG00000219438 CDS Human protein_coding chr22:48972302 chr22:48972303 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_89754 0 0 0 0 1 FAM19A5 chr22:48972383 5'GT 48972383 Upstream 81bp
chr12 109972460 109972460 1 + G A CESC 109972457 + 109972437 109972477 41 CACCATCCGCAAGCGGGAGCCAGGCGGCCGCCTGCCCACCT CACCATCCGCAAGCGGGAGCCAGACGGCCGCCTGCCCACCT < 41bp 0.763221054950246 0.553106302946121 0.9521983 0.9313418 prediction 0.42022950400825 Functional Loss - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109972457 chr12:109972460 nonsynonymous SNV 0.893 1 24 hm5C_associated_SNPs_89756 0 0 0 0 1 UBE3B chr12:109972396 3'AG 109972396 Downstream 65bp
chr2 219614006 219614006 1 + G A LGG 219614003 + 219613983 219614023 41 CCCTATGTGACCAGCCTGCTCAAGATGTATGTGCGACGGCC CCCTATGTGACCAGCCTGCTCAAAATGTATGTGCGACGGCC < 41bp 0.815358991742239 0.605249643819733 0.86667895 0.47802433 prediction 0.420218695845012 Functional Loss - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219614003 chr2:219614006 synonymous SNV . 0 24 hm5C_associated_SNPs_89760 0 0 1 0 1 TTLL4 chr2:219613976 3'AG 219613976 Downstream 31bp
chr17 80014563 80014563 1 + C T STAD 80014560 + 80014540 80014580 41 GATGGCGGCAGCCTTCAATACCACGGTGGCCGCCCTGGAGG GATGGCGGCAGCCTTCAATACCATGGTGGCCGCCCTGGAGG < 41bp 0.71651524938549 0.50640596551625 0.86077386 0.65681154 prediction 0.420218567738482 Functional Loss - GPS1 ENSG00000169727 CDS Human protein_coding chr17:80014560 chr17:80014563 nonsynonymous SNV 0.413 4 24 hm5C_associated_SNPs_89761 0 0 1 0 2 GPS1 chr17:80014505 3'AG 80014505 Downstream 59bp
chr17 80014563 80014563 1 + C T STAD 80014560 + 80014540 80014580 41 GATGGCGGCAGCCTTCAATACCACGGTGGCCGCCCTGGAGG GATGGCGGCAGCCTTCAATACCATGGTGGCCGCCCTGGAGG < 41bp 0.71651524938549 0.50640596551625 0.86077386 0.65681154 prediction 0.420218567738482 Functional Loss - GPS1 ENSG00000169727 CDS Human protein_coding chr17:80014560 chr17:80014563 nonsynonymous SNV 0.413 4 24 hm5C_associated_SNPs_89761 0 0 1 0 2 GPS1 chr17:80014642 5'GT 80014642 Upstream 80bp
chr12 8906506 8906506 1 + C T COAD 8906504 + 8906484 8906524 41 AGGTAAAGCTGTTTTCTTGGCTCGAGATAAGCACCATTTGG AGGTAAAGCTGTTTTCTTGGCTTGAGATAAGCACCATTTGG < 41bp 0.710098189310195 0.418692845909349 0.27980238 0.21472076 prediction 0.42019637862039 Functional Loss - RIMKLB ENSG00000166532 CDS Human protein_coding chr12:8906504 chr12:8906506 stopgain 1.000 0 23 hm5C_associated_SNPs_89764 0 0 0 1 1 RIMKLB chr12:8906486 3'AG 8906486 Downstream 21bp
chrX 65476034 65476034 1 + G A SKCM 65476031 + 65476011 65476051 41 GAGGACGGAGTGACATGGATCGGGAATTTGCATTGTTGTTC GAGGACGGAGTGACATGGATCGGAAATTTGCATTGTTGTTC < 41bp 0.814280521107347 0.60418456652138 0.89179385 0.7124704 prediction 0.420191909171934 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65476031 chrX:65476034 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_89765 0 0 0 0 1 HEPH chrX:65475947 3'AG 65475947 Downstream 88bp
chr22 35789528 35789528 1 + C T SKCM 35789526 + 35789506 35789546 41 CCCGCTCCCAGGCTCCGCTTCTCCGATGGGTCCTTACACTC CCCGCTCCCAGGCTCCGCTTCTTCGATGGGTCCTTACACTC < 41bp 0.710095342678626 0.436561781074787 0.070293844 0.014956266 prediction 0.420190685357252 Functional Loss - HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35789526 chr22:35789528 synonymous SNV . 0 23 hm5C_associated_SNPs_89767 0 0 0 0 1 HMOX1 chr22:35789461 3'AG 35789461 Downstream 68bp
chrX 47442935 47442935 1 + G A UCEC 47442932 + 47442912 47442952 41 CGGCCTTCTGCAATTCCGACCTCGGTGAGTCCTCACCCCAC CGGCCTTCTGCAATTCCGACCTCAGTGAGTCCTCACCCCAC < 41bp 0.715991137015279 0.505897289866954 0.2724901 0.27565345 prediction 0.42018769429665 Functional Loss - TIMP1 ENSG00000102265 CDS Human protein_coding chrX:47442932 chrX:47442935 nonsynonymous SNV 0.148 5 24 hm5C_associated_SNPs_89768 0 0 1 0 1 TIMP1 chrX:47442935 5'GT 47442935 Upstream 1bp
chr10 76154015 76154015 1 + C T UCEC 76154012 + 76153992 76154032 41 GCCCATGTGGATGCTCATTACTACGAGCAGAATGAGCAGCC GCCCATGTGGATGCTCATTACTATGAGCAGAATGAGCAGCC < 41bp 0.710584822998751 0.500495526224681 0.29673448 0.28867656 prediction 0.42017859354814 Functional Loss - ADK ENSG00000156110 CDS Human protein_coding chr10:76154012 chr10:76154015 synonymous SNV . 0 24 hm5C_associated_SNPs_89772 0 0 1 0 1 ADK chr10:76154071 5'GT 76154071 Upstream 57bp
chr2 177036300 177036300 1 + G C STAD 177036299 + 177036279 177036319 41 AGCATCCAAGCGGGTACGCACGGCATACACGAGCGCGCAGC AGCATCCAAGCGGGTACGCACCGCATACACGAGCGCGCAGC < 41bp 0.8985082484257 0.688419979388216 0.82286304 0.5650058 prediction 0.420176538074968 Functional Loss - HOXD3 ENSG00000128652 CDS Human protein_coding chr2:177036299 chr2:177036300 synonymous SNV . 0 22 hm5C_associated_SNPs_89775 0 0 0 0 1 HOXD3 chr2:177036245 3'AG 177036245 Downstream 56bp
chr16 72141429 72141429 1 + G A UCEC 72141426 + 72141406 72141446 41 CTATGTATCAGCTCTGGATCCTCGGGGCCCTGGACAACACA CTATGTATCAGCTCTGGATCCTCAGGGCCCTGGACAACACA < 41bp 0.809603911709918 0.599515791038856 0.479562 0.08219215 prediction 0.420176241342125 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72141426 chr16:72141429 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_89776 0 0 1 0 1 DHX38 chr16:72141447 5'GT 72141447 Upstream 19bp
chr19 580458 580458 1 + C T BLCA 580455 + 580435 580475 41 TGGGCACGGCCAACATCCAGCTCCACGGTGAGTCCTGCAGC TGGGCACGGCCAACATCCAGCTCTACGGTGAGTCCTGCAGC < 41bp 0.713260650068453 0.503175394150446 0.6309438 0.6360297 prediction 0.420170511836014 Functional Loss - BSG ENSG00000172270 CDS Human protein_coding chr19:580455 chr19:580458 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_89779 0 0 1 2 1 BSG chr19:580461 5'GT 580461 Upstream 4bp
chr19 11101924 11101924 1 + C T COAD 11101922 + 11101902 11101942 41 GCAGCAAGCGCCAGTCCCTGCGCGAGGCCCGCATCACTGAG GCAGCAAGCGCCAGTCCCTGCGTGAGGCCCGCATCACTGAG < 41bp 0.84160971172973 0.631526637003513 0.58036214 0.33774784 prediction 0.420166149452436 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11101922 chr19:11101924 synonymous SNV . 0 23 hm5C_associated_SNPs_89780 1 0 1 0 2 SMARCA4 chr19:11101826 3'AG 11101826 Downstream 99bp
chr19 11101924 11101924 1 + C T COAD 11101922 + 11101902 11101942 41 GCAGCAAGCGCCAGTCCCTGCGCGAGGCCCGCATCACTGAG GCAGCAAGCGCCAGTCCCTGCGTGAGGCCCGCATCACTGAG < 41bp 0.84160971172973 0.631526637003513 0.58036214 0.33774784 prediction 0.420166149452436 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11101922 chr19:11101924 synonymous SNV . 0 23 hm5C_associated_SNPs_89780 1 0 1 0 2 SMARCA4 chr19:11101999 5'GT 11101999 Upstream 76bp
chr9 131749135 131749135 1 + G A BLCA 131749132 + 131749112 131749152 41 ATGCGATACTGAACCTGTGCCACGAGACAGACCTGCACAGC ATGCGATACTGAACCTGTGCCACAAGACAGACCTGCACAGC < 41bp 0.710082018573582 0.466836912869035 0.22735769 0.30384356 prediction 0.420164037147165 Functional Loss - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131749132 chr9:131749135 nonsynonymous SNV 0.529 3 24 hm5C_associated_SNPs_89781 0 0 1 0 2 NUP188 chr9:131749088 3'AG 131749088 Downstream 48bp
chr9 131749135 131749135 1 + G A BLCA 131749132 + 131749112 131749152 41 ATGCGATACTGAACCTGTGCCACGAGACAGACCTGCACAGC ATGCGATACTGAACCTGTGCCACAAGACAGACCTGCACAGC < 41bp 0.710082018573582 0.466836912869035 0.22735769 0.30384356 prediction 0.420164037147165 Functional Loss - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131749132 chr9:131749135 nonsynonymous SNV 0.529 3 24 hm5C_associated_SNPs_89781 0 0 1 0 2 NUP188 chr9:131749154 5'GT 131749154 Upstream 20bp
chr9 131749134 131749134 1 + C T PAAD 131749132 + 131749112 131749152 41 ATGCGATACTGAACCTGTGCCACGAGACAGACCTGCACAGC ATGCGATACTGAACCTGTGCCATGAGACAGACCTGCACAGC < 41bp 0.710082018573582 0.419956227568048 0.22735769 0.272124 prediction 0.420164037147165 Functional Loss - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131749132 chr9:131749134 synonymous SNV . 0 23 hm5C_associated_SNPs_89782 0 0 1 0 2 NUP188 chr9:131749088 3'AG 131749088 Downstream 47bp
chr9 131749134 131749134 1 + C T PAAD 131749132 + 131749112 131749152 41 ATGCGATACTGAACCTGTGCCACGAGACAGACCTGCACAGC ATGCGATACTGAACCTGTGCCATGAGACAGACCTGCACAGC < 41bp 0.710082018573582 0.419956227568048 0.22735769 0.272124 prediction 0.420164037147165 Functional Loss - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131749132 chr9:131749134 synonymous SNV . 0 23 hm5C_associated_SNPs_89782 0 0 1 0 2 NUP188 chr9:131749154 5'GT 131749154 Upstream 21bp
chr16 23768555 23768555 1 + G T UCEC 23768553 + 23768533 23768573 41 GATGGTTGGGGTACAGGTGACAGAAGAGCAGCTGGAGAACA GATGGTTGGGGTACAGGTGACATAAGAGCAGCTGGAGAACA < 41bp 0.710070068537992 0.410051330891113 0.74045587 0.6073055 prediction 0.420140137075984 Functional Loss - CHP2 ENSG00000166869 CDS Human protein_coding chr16:23768553 chr16:23768555 stopgain 0.993 0 23 hm5C_associated_SNPs_89785 0 0 0 0 2 CHP2 chr16:23768522 3'AG 23768522 Downstream 34bp
chr16 23768555 23768555 1 + G T UCEC 23768553 + 23768533 23768573 41 GATGGTTGGGGTACAGGTGACAGAAGAGCAGCTGGAGAACA GATGGTTGGGGTACAGGTGACATAAGAGCAGCTGGAGAACA < 41bp 0.710070068537992 0.410051330891113 0.74045587 0.6073055 prediction 0.420140137075984 Functional Loss - CHP2 ENSG00000166869 CDS Human protein_coding chr16:23768553 chr16:23768555 stopgain 0.993 0 23 hm5C_associated_SNPs_89785 0 0 0 0 2 CHP2 chr16:23768644 5'GT 23768644 Upstream 90bp
chr1 110018244 110018244 1 + C T BRCA 110018241 + 110018221 110018261 41 TTCGGGTCCTGTGGCTCCTACAGCGGGGAGACAGGAGCAAT TTCGGGTCCTGTGGCTCCTACAGTGGGGAGACAGGAGCAAT < 41bp 0.736127030951847 0.526058228505876 0.51218057 0.46172604 prediction 0.420137604891942 Functional Loss - SYPL2 ENSG00000143028 CDS Human protein_coding chr1:110018241 chr1:110018244 synonymous SNV . 0 24 hm5C_associated_SNPs_89788 0 0 0 0 2 SYPL2 chr1:110018203 3'AG 110018203 Downstream 42bp
chr1 110018244 110018244 1 + C T BRCA 110018241 + 110018221 110018261 41 TTCGGGTCCTGTGGCTCCTACAGCGGGGAGACAGGAGCAAT TTCGGGTCCTGTGGCTCCTACAGTGGGGAGACAGGAGCAAT < 41bp 0.736127030951847 0.526058228505876 0.51218057 0.46172604 prediction 0.420137604891942 Functional Loss - SYPL2 ENSG00000143028 CDS Human protein_coding chr1:110018241 chr1:110018244 synonymous SNV . 0 24 hm5C_associated_SNPs_89788 0 0 0 0 2 SYPL2 chr1:110018327 5'GT 110018327 Upstream 84bp
chr9 116999295 116999295 1 + G A UCEC 116999292 + 116999272 116999312 41 GTTGCCAGGGTTCCCCGGTGCACGGGGGAAGCCAGGGCCTC GTTGCCAGGGTTCCCCGGTGCACAGGGGAAGCCAGGGCCTC < 41bp 0.710065807813635 0.467832907527039 0.6161711 0.3294924 prediction 0.42013161562727 Functional Loss - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116999292 chr9:116999295 nonsynonymous SNV 0.815 3 24 hm5C_associated_SNPs_89789 0 0 1 0 2 COL27A1 chr9:116999261 3'AG 116999261 Downstream 35bp
chr9 116999295 116999295 1 + G A UCEC 116999292 + 116999272 116999312 41 GTTGCCAGGGTTCCCCGGTGCACGGGGGAAGCCAGGGCCTC GTTGCCAGGGTTCCCCGGTGCACAGGGGAAGCCAGGGCCTC < 41bp 0.710065807813635 0.467832907527039 0.6161711 0.3294924 prediction 0.42013161562727 Functional Loss - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116999292 chr9:116999295 nonsynonymous SNV 0.815 3 24 hm5C_associated_SNPs_89789 0 0 1 0 2 COL27A1 chr9:116999314 5'GT 116999314 Upstream 20bp
chr16 56866231 56866231 1 + G T LUSC 56866227 + 56866207 56866247 41 TTGAACCAAGTGTGTTTTGACGACGATGGCACCAGCTCCCC TTGAACCAAGTGTGTTTTGACGACTATGGCACCAGCTCCCC < 41bp 0.711695304596699 0.501634007435476 0.2903701 0.09569454 prediction 0.420122594322447 Functional Loss - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56866227 chr16:56866231 nonsynonymous SNV 0.915 2 25 hm5C_associated_SNPs_89791 0 0 1 0 2 NUP93 chr16:56866207 3'AG 56866207 Downstream 25bp
chr16 56866231 56866231 1 + G T LUSC 56866227 + 56866207 56866247 41 TTGAACCAAGTGTGTTTTGACGACGATGGCACCAGCTCCCC TTGAACCAAGTGTGTTTTGACGACTATGGCACCAGCTCCCC < 41bp 0.711695304596699 0.501634007435476 0.2903701 0.09569454 prediction 0.420122594322447 Functional Loss - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56866227 chr16:56866231 nonsynonymous SNV 0.915 2 25 hm5C_associated_SNPs_89791 0 0 1 0 2 NUP93 chr16:56866300 5'GT 56866300 Upstream 70bp
chr20 39728838 39728838 1 + T C UCEC 39728837 + 39728817 39728857 41 ACCACCCCAAGATGGGCATGCTGAAGAGACGAATCATGCCC ACCACCCCAAGATGGGCATGCCGAAGAGACGAATCATGCCC < 41bp 0.839346052706016 0.629285031881544 0.15740484 0.18856707 prediction 0.420122041648945 Functional Loss - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39728837 chr20:39728838 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_89792 0 0 1 0 1 TOP1 chr20:39728883 5'GT 39728883 Upstream 46bp
chr22 50655468 50655468 1 + G A LUSC 50655465 + 50655445 50655485 41 CCTGGCAGGCTGAGCACGTGCGCGTGATGCACGCCAACAAC CCTGGCAGGCTGAGCACGTGCGCATGATGCACGCCAACAAC < 41bp 0.819758111340966 0.609698357825351 0.50704557 0.37737286 prediction 0.420119507031229 Functional Loss - SELENOO ENSG00000073169 CDS Human protein_coding chr22:50655465 chr22:50655468 unknown 0.203 1 24 hm5C_associated_SNPs_89794 0 0 0 0 1 SELENOO chr22:50655401 3'AG 50655401 Downstream 68bp
chr13 24465587 24465587 1 - C T HNSC 24465590 - 24465570 24465610 41 CTGCACACCAGAGATGCTTACGTGAGCTCTGAGGACCAGGC CTGCACACCAGAGATGCTTACGTAAGCTCTGAGGACCAGGC < 41bp 0.800652125003285 0.590602013150877 0.60566455 0.33657855 prediction 0.420100223704814 Functional Loss - C1QTNF9B;PCOTH ENSG00000205863 CDS Human protein_coding chr13:24465590 chr13:24465587 synonymous SNV . 0 24 hm5C_associated_SNPs_89797 0 0 0 0 1 C1QTNF9B chr13:24465650 3'AG 24465650 Downstream 64bp
chr6 35754780 35754780 1 + C T CESC 35754778 + 35754758 35754798 41 CGTGTCCCTCCCTGCAGGAGCTCAAGGAGTCTTGCATCCGG CGTGTCCCTCCCTGCAGGAGCTTAAGGAGTCTTGCATCCGG < 41bp 0.836974020640982 0.626925903871232 0.5836844 0.8581778 prediction 0.420096233539501 Functional Loss - CLPSL1 ENSG00000204140 CDS Human protein_coding chr6:35754778 chr6:35754780 synonymous SNV . 0 23 hm5C_associated_SNPs_89798 0 0 0 0 1 CLPSL1 chr6:35754775 3'AG 35754775 Downstream 6bp
chrX 22245649 22245649 1 + G T LUSC 22245647 + 22245627 22245667 41 TACAGGAAATGGATAAATGACAGAAGGCAGGGACTTGAGGA TACAGGAAATGGATAAATGACATAAGGCAGGGACTTGAGGA < 41bp 0.710045520488812 0.364810193173257 0.43728954 0.23738858 prediction 0.420091040977624 Functional Loss - PHEX ENSG00000102174 CDS Human protein_coding chrX:22245647 chrX:22245649 nonsynonymous SNV 0.992 2 23 hm5C_associated_SNPs_89799 0 0 0 0 2 PHEX chrX:22245624 3'AG 22245624 Downstream 26bp
chrX 22245649 22245649 1 + G T LUSC 22245647 + 22245627 22245667 41 TACAGGAAATGGATAAATGACAGAAGGCAGGGACTTGAGGA TACAGGAAATGGATAAATGACATAAGGCAGGGACTTGAGGA < 41bp 0.710045520488812 0.364810193173257 0.43728954 0.23738858 prediction 0.420091040977624 Functional Loss - PHEX ENSG00000102174 CDS Human protein_coding chrX:22245647 chrX:22245649 nonsynonymous SNV 0.992 2 23 hm5C_associated_SNPs_89799 0 0 0 0 2 PHEX chrX:22245728 5'GT 22245728 Upstream 80bp
chr15 49575840 49575840 1 + C T SKCM 49575837 + 49575817 49575857 41 GGAGCAGTGTTTGTGATTGCCAACAGTTGTGTGGAGATGAA GGAGCAGTGTTTGTGATTGCCAATAGTTGTGTGGAGATGAA < 41bp 0.755687722218818 0.545643315944229 0.21737072 0.24669024 prediction 0.420088812549178 Functional Loss - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49575837 chr15:49575840 synonymous SNV . 0 24 hm5C_associated_SNPs_89800 0 0 1 1 2 GALK2 chr15:49575763 3'AG 49575763 Downstream 78bp
chr15 49575840 49575840 1 + C T SKCM 49575837 + 49575817 49575857 41 GGAGCAGTGTTTGTGATTGCCAACAGTTGTGTGGAGATGAA GGAGCAGTGTTTGTGATTGCCAATAGTTGTGTGGAGATGAA < 41bp 0.755687722218818 0.545643315944229 0.21737072 0.24669024 prediction 0.420088812549178 Functional Loss - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49575837 chr15:49575840 synonymous SNV . 0 24 hm5C_associated_SNPs_89800 0 0 1 1 2 GALK2 chr15:49575915 5'GT 49575915 Upstream 76bp
chrX 153670014 153670014 1 + G A BLCA 153670011 + 153669991 153670031 41 ATCTGTGACCCCAGCTACATCCCGGACCGTGTGCGGAAGGC ATCTGTGACCCCAGCTACATCCCAGACCGTGTGCGGAAGGC < 41bp 0.734018723828225 0.523974732195815 0.16470793 0.05861345 prediction 0.420087983264821 Functional Loss - GDI1 ENSG00000203879 CDS Human protein_coding chrX:153670011 chrX:153670014 synonymous SNV . 0 24 hm5C_associated_SNPs_89801 0 0 1 0 1 GDI1 chrX:153669970 3'AG 153669970 Downstream 45bp
chr12 50232353 50232353 1 + C T rs114157396 50232351 + 50232331 50232371 41 AATCTGATTGGGCATGTCACCTCGGATGGCAAGGGAGTGGA AATCTGATTGGGCATGTCACCTTGGATGGCAAGGGAGTGGA < 41bp 0.848186849110963 0.638143904603154 0.6613915 0.34824783 prediction 0.420085889015618 Functional Loss - BCDIN3D ENSG00000186666 CDS Human protein_coding chr12:50232351 chr12:50232353 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_89802 0 0 0 0 1 BCDIN3D chr12:50232423 5'GT 50232423 Upstream 71bp
chr11 67186991 67186991 1 + G T UCEC 67186988 + 67186968 67187008 41 AGCTCAGTGGCTGGCGCTGGCGGGGGCGGCAGGCATGGCGT AGCTCAGTGGCTGGCGCTGGCGGTGGCGGCAGGCATGGCGT < 41bp 0.942397590141097 0.732361164836217 0.93657666 0.9005252 prediction 0.420072850609759 Functional Loss - CARNS1 ENSG00000172508;ENSG00000172531 CDS Human other chr11:67186988 chr11:67186991 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_89804 0 0 0 0 1 CARNS1 chr11:67186958 3'AG 67186958 Downstream 34bp
chr6 25606390 25606390 1 + C T BLCA 25606388 + 25606368 25606408 41 AGCGGAAGCAGGCTCCAGGTCTCGGAGCTCATCCAGCACAC AGCGGAAGCAGGCTCCAGGTCTTGGAGCTCATCCAGCACAC < 41bp 0.864958481415453 0.654922232874528 0.13103145 0.03591329 prediction 0.420072497081851 Functional Loss - CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25606388 chr6:25606390 nonsynonymous SNV 0.865 3 23 hm5C_associated_SNPs_89805 0 0 0 0 1 CARMIL1 chr6:25606307 3'AG 25606307 Downstream 84bp
chr5 162868318 162868318 1 + G A UCEC 162868315 + 162868295 162868335 41 AACTGTATTATTCACTCCTTCAAGAGAACTTGCCACTTGAA AACTGTATTATTCACTCCTTCAAAAGAACTTGCCACTTGAA < 41bp 0.768690825434497 0.558655197953722 0.38044006 0.2132155 prediction 0.420071254961549 Functional Loss - CCNG1 ENSG00000113328 CDS Human protein_coding chr5:162868315 chr5:162868318 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_89806 0 0 1 1 1 CCNG1 chr5:162868337 5'GT 162868337 Upstream 20bp
chr2 65299614 65299614 1 + C T rs35694840 65299611 + 65299591 65299631 41 AGAGGACCAGCCAGAGTGCCCGGCGCCCTACCTGCACAGAG AGAGGACCAGCCAGAGTGCCCGGTGCCCTACCTGCACAGAG < 41bp 0.718939592270962 0.508904102252568 0.7996335 0.39705366 prediction 0.420070980036789 Functional Loss - CEP68 ENSG00000011523 CDS Human protein_coding chr2:65299611 chr2:65299614 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_89807 0 0 0 0 1 CEP68 chr2:65299703 5'GT 65299703 Upstream 90bp
chrX 152034434 152034434 1 + C T LGG 152034431 + 152034411 152034451 41 ATCCGCCCTCATGGCATTTTCGGCCCAAGGGACCCGCAGTT ATCCGCCCTCATGGCATTTTCGGTCCAAGGGACCCGCAGTT < 41bp 0.714435200404519 0.504400838140675 0.64623547 0.28481743 prediction 0.420068724527688 Functional Loss - NSDHL ENSG00000147383 CDS Human protein_coding chrX:152034431 chrX:152034434 synonymous SNV . 0 24 hm5C_associated_SNPs_89808 0 0 1 0 2 NSDHL chrX:152034363 3'AG 152034363 Downstream 72bp
chrX 152034434 152034434 1 + C T LGG 152034431 + 152034411 152034451 41 ATCCGCCCTCATGGCATTTTCGGCCCAAGGGACCCGCAGTT ATCCGCCCTCATGGCATTTTCGGTCCAAGGGACCCGCAGTT < 41bp 0.714435200404519 0.504400838140675 0.64623547 0.28481743 prediction 0.420068724527688 Functional Loss - NSDHL ENSG00000147383 CDS Human protein_coding chrX:152034431 chrX:152034434 synonymous SNV . 0 24 hm5C_associated_SNPs_89808 0 0 1 0 2 NSDHL chrX:152034505 5'GT 152034505 Upstream 72bp
chr17 74076903 74076903 1 + C T CESC 74076901 + 74076881 74076921 41 CCTTGCAGCAAGGCCAGAGGCTCAGGTTGCCATGGCCTCAC CCTTGCAGCAAGGCCAGAGGCTTAGGTTGCCATGGCCTCAC < 41bp 0.819694606233843 0.609662467766616 0.30316782 0.6904141 prediction 0.420064276934454 Functional Loss - ZACN ENSG00000186919 CDS Human protein_coding chr17:74076901 chr17:74076903 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_89809 0 0 0 0 1 ZACN chr17:74076821 3'AG 74076821 Downstream 83bp
chr10 95279477 95279477 1 + C T UCEC 95279475 + 95279455 95279495 41 TAGACTTTGAAAATGAAAAACTCGACCGTCAACATGTGCAG TAGACTTTGAAAATGAAAAACTTGACCGTCAACATGTGCAG < 41bp 0.710025983303434 0.404032707212512 0.07882494 0.025968194 prediction 0.420051966606868 Functional Loss - CEP55 ENSG00000138180 CDS Human protein_coding chr10:95279475 chr10:95279477 synonymous SNV . 0 23 hm5C_associated_SNPs_89810 0 0 1 0 2 CEP55 chr10:95279439 3'AG 95279439 Downstream 39bp
chr10 95279477 95279477 1 + C T UCEC 95279475 + 95279455 95279495 41 TAGACTTTGAAAATGAAAAACTCGACCGTCAACATGTGCAG TAGACTTTGAAAATGAAAAACTTGACCGTCAACATGTGCAG < 41bp 0.710025983303434 0.404032707212512 0.07882494 0.025968194 prediction 0.420051966606868 Functional Loss - CEP55 ENSG00000138180 CDS Human protein_coding chr10:95279475 chr10:95279477 synonymous SNV . 0 23 hm5C_associated_SNPs_89810 0 0 1 0 2 CEP55 chr10:95279564 5'GT 95279564 Upstream 88bp
chr4 184366205 184366205 1 + C T LAML 184366203 + 184366183 184366223 41 TTTCCATGGCCTGGGCGAACCACGTCTTCCTCGGGTGCCGG TTTCCATGGCCTGGGCGAACCATGTCTTCCTCGGGTGCCGG < 41bp 0.79473574177804 0.584717566868067 0.25591233 0.1983552 prediction 0.420036349819945 Functional Loss - CDKN2AIP ENSG00000168564 CDS Human protein_coding chr4:184366203 chr4:184366205 synonymous SNV . 0 23 hm5C_associated_SNPs_89817 0 0 1 0 1 CDKN2AIP chr4:184366222 5'GT 184366222 Upstream 18bp
chrX 151820163 151820163 1 + G A GBM 151820160 + 151820140 151820180 41 TCTTTTCTACAGTCGAGGACCTCGGCGCCAGCCTAGGCGAC TCTTTTCTACAGTCGAGGACCTCAGCGCCAGCCTAGGCGAC < 41bp 0.710014877226848 0.452321352217122 0.4037367 0.24126035 prediction 0.420029754453697 Functional Loss - GABRQ ENSG00000147402 CDS Human other chrX:151820160 chrX:151820163 nonsynonymous SNV 0.027 1 24 hm5C_associated_SNPs_89819 0 0 0 0 1 GABRQ chrX:151820245 5'GT 151820245 Upstream 83bp
chrX 151820162 151820162 1 + C T UCEC 151820160 + 151820140 151820180 41 TCTTTTCTACAGTCGAGGACCTCGGCGCCAGCCTAGGCGAC TCTTTTCTACAGTCGAGGACCTTGGCGCCAGCCTAGGCGAC < 41bp 0.710014877226848 0.426988068986865 0.4037367 0.40741745 prediction 0.420029754453697 Functional Loss - GABRQ ENSG00000147402 CDS Human other chrX:151820160 chrX:151820162 nonsynonymous SNV 0.048 1 23 hm5C_associated_SNPs_89820 0 0 0 0 1 GABRQ chrX:151820245 5'GT 151820245 Upstream 84bp
chr17 3563921 3563921 1 + G T UCEC 3563919 + 3563899 3563939 41 CTTTTCTTTAAGGCTTCAGGCAGCGCGCACAGGCTCTGGCA CTTTTCTTTAAGGCTTCAGGCATCGCGCACAGGCTCTGGCA < 41bp 0.710014741207553 0.351415434411166 0.3433987 0.1952894 prediction 0.420029482415106 Functional Loss - CTNS ENSG00000040531 CDS Human protein_coding chr17:3563919 chr17:3563921 nonsynonymous SNV 0.449 2 23 hm5C_associated_SNPs_89821 0 0 0 0 1 CTNS chr17:3563911 3'AG 3563911 Downstream 11bp
chr1 205494318 205494318 1 + G A SKCM 205494315 + 205494295 205494335 41 CATACGTGAAACTGGACAAACTGGGAGAGGTAAGACGCTGG CATACGTGAAACTGGACAAACTGAGAGAGGTAAGACGCTGG < 41bp 0.710009767824514 0.478127939584198 0.56210357 0.58018816 prediction 0.420019535649028 Functional Loss - CDK18 ENSG00000117266 CDS Human protein_coding chr1:205494315 chr1:205494318 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_89829 0 0 1 0 2 CDK18 chr1:205494267 3'AG 205494267 Downstream 52bp
chr1 205494318 205494318 1 + G A SKCM 205494315 + 205494295 205494335 41 CATACGTGAAACTGGACAAACTGGGAGAGGTAAGACGCTGG CATACGTGAAACTGGACAAACTGAGAGAGGTAAGACGCTGG < 41bp 0.710009767824514 0.478127939584198 0.56210357 0.58018816 prediction 0.420019535649028 Functional Loss - CDK18 ENSG00000117266 CDS Human protein_coding chr1:205494315 chr1:205494318 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_89829 0 0 1 0 2 CDK18 chr1:205494323 5'GT 205494323 Upstream 6bp
chrX 54841177 54841177 1 + G T STAD 54841175 + 54841155 54841195 41 CTGCGCTCTTACTATGAGACCAGCAAGATGAAAGTCCTCAA CTGCGCTCTTACTATGAGACCATCAAGATGAAAGTCCTCAA < 41bp 0.710005647939729 0.361910094997673 0.16943336 0.076517195 prediction 0.420011295879459 Functional Loss - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54841175 chrX:54841177 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_89831 0 0 1 0 2 MAGED2 chrX:54841094 3'AG 54841094 Downstream 84bp
chrX 54841177 54841177 1 + G T STAD 54841175 + 54841155 54841195 41 CTGCGCTCTTACTATGAGACCAGCAAGATGAAAGTCCTCAA CTGCGCTCTTACTATGAGACCATCAAGATGAAAGTCCTCAA < 41bp 0.710005647939729 0.361910094997673 0.16943336 0.076517195 prediction 0.420011295879459 Functional Loss - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54841175 chrX:54841177 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_89831 0 0 1 0 2 MAGED2 chrX:54841208 5'GT 54841208 Upstream 32bp
chr1 47280907 47280907 1 + G T COAD 47280904 + 47280884 47280924 41 CGTTGTAGAGAGGAGGTCCGCGAGATCCTAGGGGACCAGGA CGTTGTAGAGAGGAGGTCCGCGATATCCTAGGGGACCAGGA < 41bp 0.933357344138907 0.723354254677586 0.88091385 0.09586775 prediction 0.420006178922643 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47280904 chr1:47280907 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_89832 0 0 0 0 1 CYP4B1 chr1:47280936 5'GT 47280936 Upstream 30bp
chr17 7761931 7761931 1 + A C UCEC 7761927 + 7761907 7761947 41 CAAACCCTCCTTTAAAGATCCGCAAGCACATAGATCCGCTG CAAACCCTCCTTTAAAGATCCGCACGCACATAGATCCGCTG < 41bp 0.710001749212933 0.286523514537388 0.07273087 0.031327277 prediction 0.420003498425866 Functional Loss - CYB5D1 ENSG00000182224 CDS Human protein_coding chr17:7761927 chr17:7761931 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_89833 0 0 1 0 1 CYB5D1 chr17:7761924 3'AG 7761924 Downstream 8bp
chr16 839084 839084 1 + A C rs2277901 839083 + 839063 839103 41 AGGGCGGCGCCAGGAAGAGGCAGGTGGACGCCGACCTGCAG AGGGCGGCGCCAGGAAGAGGCCGGTGGACGCCGACCTGCAG < 41bp 0.815348029328258 0.605353050494747 0.8941488 0.8803262 prediction 0.419989957667021 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:839083 chr16:839084 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_89838 0 0 1 0 2 CHTF18 chr16:839085 5'GT 839085 Upstream 2bp
chr16 839084 839084 1 + A C rs2277901 839083 + 839063 839103 41 AGGGCGGCGCCAGGAAGAGGCAGGTGGACGCCGACCTGCAG AGGGCGGCGCCAGGAAGAGGCCGGTGGACGCCGACCTGCAG < 41bp 0.815348029328258 0.605353050494747 0.8941488 0.8803262 prediction 0.419989957667021 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:839083 chr16:839084 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_89838 0 0 1 0 2 CHTF18 chr16:839125 5'GT 839125 Upstream 42bp
chr19 501740 501740 1 + G A SKCM 501737 + 501717 501757 41 AGTCTCCCGACACCACCTCCCCGGAGTCTCCCGACACCACC AGTCTCCCGACACCACCTCCCCGAAGTCTCCCGACACCACC < 41bp 0.808343449901618 0.598349321470497 0.6991664 0.15303648 prediction 0.419988256862242 Functional Loss - MADCAM1 ENSG00000099866 CDS Human protein_coding chr19:501737 chr19:501740 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_89839 0 0 0 0 1 MADCAM1 chr19:501669 3'AG 501669 Downstream 72bp
chr1 43647470 43647470 1 + G T LUSC 43647468 + 43647448 43647488 41 TCTACTGGCTGTGGGAAAAACAGAAAGTAATGGCCATTGTT TCTACTGGCTGTGGGAAAAACATAAAGTAATGGCCATTGTT < 41bp 0.709991694379826 0.364426492777704 0.8042685 0.15043682 prediction 0.419983388759652 Functional Loss - CFAP57 ENSG00000243710 CDS Human protein_coding chr1:43647468 chr1:43647470 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_89841 0 0 0 0 1 CFAP57 chr1:43647521 5'GT 43647521 Upstream 52bp
chr17 44953631 44953631 1 + G A SKCM 44953628 + 44953608 44953648 41 CAGGCTGTGAAGAGTGGCCTCAGGACCACGTGTAAGTGCCA CAGGCTGTGAAGAGTGGCCTCAGAACCACGTGTAAGTGCCA < 41bp 0.810290764453503 0.600299741116151 0.24613795 0.12369913 prediction 0.419982046674704 Functional Loss - WNT9B ENSG00000158955 CDS Human protein_coding chr17:44953628 chr17:44953631 synonymous SNV . 0 24 hm5C_associated_SNPs_89843 0 0 0 0 1 WNT9B chr17:44953611 3'AG 44953611 Downstream 21bp
chr15 41769459 41769459 1 + C T KICH 41769456 + 41769436 41769476 41 GGGCAGAGGCCCTGGACCGCCAGCGGACCAAGAACATATCC GGGCAGAGGCCCTGGACCGCCAGTGGACCAAGAACATATCC < 41bp 0.729966823990998 0.519978973441572 0.83681434 0.4120375 prediction 0.419975701098853 Functional Loss - RTF1 ENSG00000137815 CDS Human protein_coding chr15:41769456 chr15:41769459 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_89844 0 0 1 0 2 RTF1 chr15:41769363 3'AG 41769363 Downstream 97bp
chr15 41769459 41769459 1 + C T KICH 41769456 + 41769436 41769476 41 GGGCAGAGGCCCTGGACCGCCAGCGGACCAAGAACATATCC GGGCAGAGGCCCTGGACCGCCAGTGGACCAAGAACATATCC < 41bp 0.729966823990998 0.519978973441572 0.83681434 0.4120375 prediction 0.419975701098853 Functional Loss - RTF1 ENSG00000137815 CDS Human protein_coding chr15:41769456 chr15:41769459 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_89844 0 0 1 0 2 RTF1 chr15:41769484 5'GT 41769484 Upstream 26bp
chr17 40452850 40452850 1 + C T rs543513401 40452847 + 40452827 40452867 41 GAGGAGATGCTGGCCGAGGTCAACGCCACCATCACGGACAT GAGGAGATGCTGGCCGAGGTCAATGCCACCATCACGGACAT < 41bp 0.70998461030508 0.496463398749162 0.40851808 0.34821296 prediction 0.419969220610161 Functional Loss - STAT5A ENSG00000126561 CDS Human protein_coding chr17:40452847 chr17:40452850 synonymous SNV . 0 24 hm5C_associated_SNPs_89846 0 0 0 0 1 STAT5A chr17:40452888 5'GT 40452888 Upstream 39bp
chr19 57705281 57705281 1 + C T rs7258170 57705278 + 57705258 57705298 41 GATGATGTGGCTGTGACTTTCACCAAGGAGGAGTGGGGGCA GATGATGTGGCTGTGACTTTCACTAAGGAGGAGTGGGGGCA < 41bp 0.77638534612591 0.566401273070599 0.31302738 0.0816704 prediction 0.419968146110621 Functional Loss - ZNF264 ENSG00000083844 CDS Human protein_coding chr19:57705278 chr19:57705281 synonymous SNV . 0 24 hm5C_associated_SNPs_89847 0 0 1 0 2 ZNF264 chr19:57705243 3'AG 57705243 Downstream 39bp
chr19 57705281 57705281 1 + C T rs7258170 57705278 + 57705258 57705298 41 GATGATGTGGCTGTGACTTTCACCAAGGAGGAGTGGGGGCA GATGATGTGGCTGTGACTTTCACTAAGGAGGAGTGGGGGCA < 41bp 0.77638534612591 0.566401273070599 0.31302738 0.0816704 prediction 0.419968146110621 Functional Loss - ZNF264 ENSG00000083844 CDS Human protein_coding chr19:57705278 chr19:57705281 synonymous SNV . 0 24 hm5C_associated_SNPs_89847 0 0 1 0 2 ZNF264 chr19:57705369 5'GT 57705369 Upstream 89bp
chr18 618060 618060 1 + C T COAD 618057 + 618037 618077 41 CTGTGGTTGAAAGACAGTCACTGCGCACCCACTTGGAAGGA CTGTGGTTGAAAGACAGTCACTGTGCACCCACTTGGAAGGA < 41bp 0.75526272115001 0.54528351370267 0.12680984 0.08029282 prediction 0.41995841489468 Functional Loss - CLUL1 ENSG00000079101 CDS Human protein_coding chr18:618057 chr18:618060 synonymous SNV . 0 24 hm5C_associated_SNPs_89849 0 0 0 0 1 CLUL1 chr18:617988 3'AG 617988 Downstream 73bp
chr19 41763488 41763488 1 + C T UCEC 41763485 + 41763465 41763505 41 ACAGCGAGATTTATGACTATCTGCGCCAGGGAAATCGCCTG ACAGCGAGATTTATGACTATCTGTGCCAGGGAAATCGCCTG < 41bp 0.709978833216487 0.488631328476383 0.21019083 0.13395184 prediction 0.419957666432974 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41763485 chr19:41763488 nonsynonymous SNV 0.992 2 24 hm5C_associated_SNPs_89850 0 0 0 0 2 AXL chr19:41763398 3'AG 41763398 Downstream 91bp
chr19 41763488 41763488 1 + C T UCEC 41763485 + 41763465 41763505 41 ACAGCGAGATTTATGACTATCTGCGCCAGGGAAATCGCCTG ACAGCGAGATTTATGACTATCTGTGCCAGGGAAATCGCCTG < 41bp 0.709978833216487 0.488631328476383 0.21019083 0.13395184 prediction 0.419957666432974 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41763485 chr19:41763488 nonsynonymous SNV 0.992 2 24 hm5C_associated_SNPs_89850 0 0 0 0 2 AXL chr19:41763534 5'GT 41763534 Upstream 47bp
chr1 1417993 1417993 1 + C T LUAD 1417991 + 1417971 1418011 41 GACCGGGACAAAGTGACAGCCACGGTAAACATATTCATAAA GACCGGGACAAAGTGACAGCCATGGTAAACATATTCATAAA < 41bp 0.709968452919879 0.435056733417494 0.61428326 0.2022737 prediction 0.419936905839759 Functional Loss - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1417991 chr1:1417993 nonsynonymous SNV 0.897 5 23 hm5C_associated_SNPs_89856 0 0 1 0 2 ATAD3B chr1:1417925 3'AG 1417925 Downstream 69bp
chr1 1417993 1417993 1 + C T LUAD 1417991 + 1417971 1418011 41 GACCGGGACAAAGTGACAGCCACGGTAAACATATTCATAAA GACCGGGACAAAGTGACAGCCATGGTAAACATATTCATAAA < 41bp 0.709968452919879 0.435056733417494 0.61428326 0.2022737 prediction 0.419936905839759 Functional Loss - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1417991 chr1:1417993 nonsynonymous SNV 0.897 5 23 hm5C_associated_SNPs_89856 0 0 1 0 2 ATAD3B chr1:1417994 5'GT 1417994 Upstream 2bp
chr1 1417994 1417994 1 + G T LUAD 1417991 + 1417971 1418011 41 GACCGGGACAAAGTGACAGCCACGGTAAACATATTCATAAA GACCGGGACAAAGTGACAGCCACTGTAAACATATTCATAAA < 41bp 0.709968452919879 0.314251916629297 0.61428326 0.1534198 prediction 0.419936905839759 Functional Loss - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1417991 chr1:1417994 synonymous SNV . 0 24 hm5C_associated_SNPs_89857 0 0 1 0 2 ATAD3B chr1:1417925 3'AG 1417925 Downstream 70bp
chr1 1417994 1417994 1 + G T LUAD 1417991 + 1417971 1418011 41 GACCGGGACAAAGTGACAGCCACGGTAAACATATTCATAAA GACCGGGACAAAGTGACAGCCACTGTAAACATATTCATAAA < 41bp 0.709968452919879 0.314251916629297 0.61428326 0.1534198 prediction 0.419936905839759 Functional Loss - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1417991 chr1:1417994 synonymous SNV . 0 24 hm5C_associated_SNPs_89857 0 0 1 0 2 ATAD3B chr1:1417994 5'GT 1417994 Upstream 1bp
chr19 1432655 1432655 1 + G A READ 1432652 + 1432632 1432672 41 GCCCCGGACATGAGCAAGCCCCCGACAGCTCAGCCAGACTT GCCCCGGACATGAGCAAGCCCCCAACAGCTCAGCCAGACTT < 41bp 0.709962948476729 0.466937535828452 0.058419406 0.04303518 prediction 0.419925896953458 Functional Loss - DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1432652 chr19:1432655 synonymous SNV . 0 24 hm5C_associated_SNPs_89860 0 0 1 0 1 DAZAP1 chr19:1432689 5'GT 1432689 Upstream 35bp
chr17 57043252 57043252 1 + G A LUSC 57043249 + 57043229 57043269 41 ACTTTAATATGCTCTTCAACCTAGAGGTAAAGGGCACTTTC ACTTTAATATGCTCTTCAACCTAAAGGTAAAGGGCACTTTC < 41bp 0.725061481121405 0.515100303138175 0.24535605 0.08593333 prediction 0.41992235596646 Functional Loss - PPM1E ENSG00000175175 CDS Human protein_coding chr17:57043249 chr17:57043252 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_89862 0 0 1 0 1 PPM1E chr17:57043254 5'GT 57043254 Upstream 3bp
chr6 32609792 32609792 1 + G T LUSC 32609790 + 32609770 32609810 41 TTTCCAAGTCTCCCGTGACACTGGGTCAGCCCAACACCCTC TTTCCAAGTCTCCCGTGACACTTGGTCAGCCCAACACCCTC < 41bp 0.91606811570631 0.706108751888232 0.2864316 0.028202623 prediction 0.419918727636156 Functional Loss - HLA-DQA1 ENSG00000196735 CDS Human protein_coding chr6:32609790 chr6:32609792 synonymous SNV . 0 23 hm5C_associated_SNPs_89864 0 0 0 0 1 HLA-DQA1 chr6:32609749 3'AG 32609749 Downstream 44bp
chr16 83941791 83941791 1 + C T UCEC 83941788 + 83941768 83941808 41 ATGAAGCGCCGCGTTGGGCCCTACAGAAGGTGTTACTTCTT ATGAAGCGCCGCGTTGGGCCCTATAGAAGGTGTTACTTCTT < 41bp 0.709958070796803 0.482388344120761 0.90308255 0.38574067 prediction 0.419916141593606 Functional Loss - MLYCD ENSG00000103150;ENSG00000260300 CDS Human protein_coding chr16:83941788 chr16:83941791 synonymous SNV . 0 24 hm5C_associated_SNPs_89865 0 0 0 0 2 MLYCD chr16:83941731 3'AG 83941731 Downstream 61bp
chr16 83941791 83941791 1 + C T UCEC 83941788 + 83941768 83941808 41 ATGAAGCGCCGCGTTGGGCCCTACAGAAGGTGTTACTTCTT ATGAAGCGCCGCGTTGGGCCCTATAGAAGGTGTTACTTCTT < 41bp 0.709958070796803 0.482388344120761 0.90308255 0.38574067 prediction 0.419916141593606 Functional Loss - MLYCD ENSG00000103150;ENSG00000260300 CDS Human other chr16:83941788 chr16:83941791 synonymous SNV . 0 24 hm5C_associated_SNPs_89865 0 0 0 0 2 MLYCD chr16:83941887 5'GT 83941887 Upstream 97bp
chr17 21208440 21208440 1 + G A DLBC 21208437 + 21208417 21208457 41 GTCTGGAGCCTGGGCATCACCATGGTACTGTGGGGGGCCAG GTCTGGAGCCTGGGCATCACCATAGTACTGTGGGGGGCCAG < 41bp 0.819661966883903 0.60970396625574 0.33086747 0.29237992 prediction 0.419916001256325 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21208437 chr17:21208440 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_89866 0 0 1 0 2 MAP2K3 chr17:21208363 3'AG 21208363 Downstream 78bp
chr17 21208440 21208440 1 + G A DLBC 21208437 + 21208417 21208457 41 GTCTGGAGCCTGGGCATCACCATGGTACTGTGGGGGGCCAG GTCTGGAGCCTGGGCATCACCATAGTACTGTGGGGGGCCAG < 41bp 0.819661966883903 0.60970396625574 0.33086747 0.29237992 prediction 0.419916001256325 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21208437 chr17:21208440 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_89866 0 0 1 0 2 MAP2K3 chr17:21208440 5'GT 21208440 Upstream 1bp
chr9 137777710 137777710 1 + G T LUAD 137777707 + 137777687 137777727 41 GTCGGCTGGGGGAGTTCTGGCTGGGGAATGACAACATCCAC GTCGGCTGGGGGAGTTCTGGCTGTGGAATGACAACATCCAC < 41bp 0.938661312036533 0.728704050612129 0.8813874 0.37810054 prediction 0.419914522848807 Functional Loss - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137777707 chr9:137777710 nonsynonymous SNV 0.871 3 24 hm5C_associated_SNPs_89868 0 0 0 0 1 FCN2 chr9:137777614 3'AG 137777614 Downstream 97bp
chr5 158710291 158710291 1 + C T BLCA 158710289 + 158710269 158710309 41 TTTTAAAATTAACTCAGTACCTCAAGGAGATAGCAAAATTA TTTTAAAATTAACTCAGTACCTTAAGGAGATAGCAAAATTA < 41bp 0.7099567260292 0.41745426460552 0.16276413 0.032153964 prediction 0.4199134520584 Functional Loss - UBLCP1 ENSG00000164332 CDS Human protein_coding chr5:158710289 chr5:158710291 synonymous SNV . 0 23 hm5C_associated_SNPs_89869 0 0 1 0 2 UBLCP1 chr5:158710220 3'AG 158710220 Downstream 72bp
chr5 158710291 158710291 1 + C T BLCA 158710289 + 158710269 158710309 41 TTTTAAAATTAACTCAGTACCTCAAGGAGATAGCAAAATTA TTTTAAAATTAACTCAGTACCTTAAGGAGATAGCAAAATTA < 41bp 0.7099567260292 0.41745426460552 0.16276413 0.032153964 prediction 0.4199134520584 Functional Loss - UBLCP1 ENSG00000164332 CDS Human protein_coding chr5:158710289 chr5:158710291 synonymous SNV . 0 23 hm5C_associated_SNPs_89869 0 0 1 0 2 UBLCP1 chr5:158710347 5'GT 158710347 Upstream 57bp
chr12 69042557 69042557 1 + C T UCEC 69042554 + 69042534 69042574 41 CTCAGGAGGCGTTGGAAAGTCTGCTTTGGTAAGTCATTCTT CTCAGGAGGCGTTGGAAAGTCTGTTTTGGTAAGTCATTCTT < 41bp 0.715886388259942 0.505933134947825 0.16121623 0.2075865 prediction 0.419906506624234 Functional Loss - RAP1B ENSG00000127314 CDS Human protein_coding chr12:69042554 chr12:69042557 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_89871 0 0 1 0 2 RAP1B chr12:69042479 3'AG 69042479 Downstream 79bp
chr12 69042557 69042557 1 + C T UCEC 69042554 + 69042534 69042574 41 CTCAGGAGGCGTTGGAAAGTCTGCTTTGGTAAGTCATTCTT CTCAGGAGGCGTTGGAAAGTCTGTTTTGGTAAGTCATTCTT < 41bp 0.715886388259942 0.505933134947825 0.16121623 0.2075865 prediction 0.419906506624234 Functional Loss - RAP1B ENSG00000127314 CDS Human protein_coding chr12:69042554 chr12:69042557 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_89871 0 0 1 0 2 RAP1B chr12:69042561 5'GT 69042561 Upstream 5bp
chr17 37817265 37817265 1 + C T UCEC 37817262 + 37817242 37817282 41 TGAATGTCCGGCGCATTGAGCGGCGCAGGGACCGATACTTG TGAATGTCCGGCGCATTGAGCGGTGCAGGGACCGATACTTG < 41bp 0.709953056377192 0.494566724720286 0.918081 0.8140961 prediction 0.419906112754384 Functional Loss - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37817262 chr17:37817265 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_89872 0 0 0 0 2 STARD3 chr17:37817234 3'AG 37817234 Downstream 32bp
chr17 37817265 37817265 1 + C T UCEC 37817262 + 37817242 37817282 41 TGAATGTCCGGCGCATTGAGCGGCGCAGGGACCGATACTTG TGAATGTCCGGCGCATTGAGCGGTGCAGGGACCGATACTTG < 41bp 0.709953056377192 0.494566724720286 0.918081 0.8140961 prediction 0.419906112754384 Functional Loss - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37817262 chr17:37817265 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_89872 0 0 0 0 2 STARD3 chr17:37817338 5'GT 37817338 Upstream 74bp
chr13 24861035 24861035 1 + G A LIHC 24861032 + 24861012 24861052 41 AGATGCGGACCAACGTCATCCGGGAGATCATGGACACCGAG AGATGCGGACCAACGTCATCCGGAAGATCATGGACACCGAG < 41bp 0.740604671882656 0.5306516671101 0.64949596 0.25872433 prediction 0.419906009545112 Functional Loss - SPATA13 ENSG00000182957;ENSG00000273167 CDS Human other chr13:24861032 chr13:24861035 nonsynonymous SNV 0.974 4 24 hm5C_associated_SNPs_89873 0 0 1 0 1 SPATA13 chr13:24861088 5'GT 24861088 Upstream 54bp
chr2 171056792 171056792 1 + G A SKCM 171056789 + 171056769 171056809 41 GGGGACAGCTGTGGCTGGTCCTGGAGGTAAGAGGCTCCCAT GGGGACAGCTGTGGCTGGTCCTGAAGGTAAGAGGCTCCCAT < 41bp 0.765197200615885 0.555244828670739 0.47299773 0.23649535 prediction 0.419904743890292 Functional Loss - MYO3B ENSG00000071909 CDS Human protein_coding chr2:171056789 chr2:171056792 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_89874 0 0 0 0 1 MYO3B chr2:171056794 5'GT 171056794 Upstream 3bp
chr1 55273303 55273303 1 + G A rs112841482 55273300 + 55273280 55273320 41 TGGGCCAAGGCCCAGGAAGCCACGCGGCTGACCCAGCTACC TGGGCCAAGGCCCAGGAAGCCACACGGCTGACCCAGCTACC < 41bp 0.709952320678679 0.453367875192339 0.4950352 0.49313694 prediction 0.419904641357359 Functional Loss - LEXM ENSG00000162398 CDS Human protein_coding chr1:55273300 chr1:55273303 synonymous SNV . 0 24 hm5C_associated_SNPs_89875 0 0 0 0 1 LEXM chr1:55273363 5'GT 55273363 Upstream 61bp
chr4 1808044 1808044 1 + C T BLCA 1808041 + 1808021 1808061 41 TGTTTGACCGAGTCTACACTCACCAGAGTGACGTGTACGTG TGTTTGACCGAGTCTACACTCACTAGAGTGACGTGTACGTG < 41bp 0.758356045329297 0.548406622905566 0.6574191 0.36348718 prediction 0.419898844847462 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1808041 chr4:1808044 stopgain 1.000 0 24 hm5C_associated_SNPs_89877 0 0 1 0 2 FGFR3 chr4:1807984 3'AG 1807984 Downstream 61bp
chr4 1808044 1808044 1 + C T BLCA 1808041 + 1808021 1808061 41 TGTTTGACCGAGTCTACACTCACCAGAGTGACGTGTACGTG TGTTTGACCGAGTCTACACTCACTAGAGTGACGTGTACGTG < 41bp 0.758356045329297 0.548406622905566 0.6574191 0.36348718 prediction 0.419898844847462 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1808041 chr4:1808044 stopgain 1.000 0 24 hm5C_associated_SNPs_89877 0 0 1 0 2 FGFR3 chr4:1808054 5'GT 1808054 Upstream 11bp
chr17 56281654 56281654 1 + G A OV 56281651 + 56281631 56281671 41 CCTGAGCAGAATTTCCTTGTCTCGAATTATATGTGACAATA CCTGAGCAGAATTTCCTTGTCTCAAATTATATGTGACAATA < 41bp 0.784401691518868 0.574452403273605 0.82164085 0.36609572 prediction 0.419898576490526 Functional Loss - EPX ENSG00000121053 CDS Human protein_coding chr17:56281651 chr17:56281654 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_89878 0 0 0 0 1 EPX chr17:56281583 3'AG 56281583 Downstream 72bp
chr11 65651026 65651026 1 + G T UCEC 65651023 + 65651003 65651043 41 AGCAATACCTGTGGCATCACCAAGTTCCCGCTCACTGCCCG AGCAATACCTGTGGCATCACCAATTTCCCGCTCACTGCCCG < 41bp 0.709947709094785 0.301503145422831 0.4025563 0.062311977 prediction 0.41989541818957 Functional Loss - CTSW ENSG00000172543 CDS Human protein_coding chr11:65651023 chr11:65651026 nonsynonymous SNV 0.376 2 24 hm5C_associated_SNPs_89879 0 0 0 4 1 CTSW chr11:65650979 3'AG 65650979 Downstream 48bp
chr13 24860418 24860418 1 + G A COAD 24860415 + 24860395 24860435 41 ACCATGTGACCATGGATGACCAGGAACTGGGCTTCAAAGCC ACCATGTGACCATGGATGACCAGAAACTGGGCTTCAAAGCC < 41bp 0.771237001338757 0.561290007450139 0.88784164 0.7380483 prediction 0.419893987777236 Functional Loss - SPATA13 ENSG00000182957;ENSG00000273167 CDS Human other chr13:24860415 chr13:24860418 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_89881 0 0 1 0 1 SPATA13 chr13:24860352 3'AG 24860352 Downstream 67bp
chr19 4234742 4234742 1 + G A rs202169937 4234739 + 4234719 4234759 41 ACAGGTGCAGTGGGAGCCTCCCGGGTCCTGGCCCTTCCCAG ACAGGTGCAGTGGGAGCCTCCCGAGTCCTGGCCCTTCCCAG < 41bp 0.833918185369831 0.623973364789196 0.9026253 0.756794 prediction 0.41988964116127 Functional Loss - EBI3 ENSG00000105246 CDS Human protein_coding chr19:4234739 chr19:4234742 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_89882 0 0 0 0 2 EBI3 chr19:4234664 3'AG 4234664 Downstream 79bp
chr19 4234742 4234742 1 + G A rs202169937 4234739 + 4234719 4234759 41 ACAGGTGCAGTGGGAGCCTCCCGGGTCCTGGCCCTTCCCAG ACAGGTGCAGTGGGAGCCTCCCGAGTCCTGGCCCTTCCCAG < 41bp 0.833918185369831 0.623973364789196 0.9026253 0.756794 prediction 0.41988964116127 Functional Loss - EBI3 ENSG00000105246 CDS Human protein_coding chr19:4234739 chr19:4234742 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_89882 0 0 0 0 2 EBI3 chr19:4234821 5'GT 4234821 Upstream 80bp
chr10 116049209 116049209 1 + C T rs188415452 116049206 + 116049186 116049226 41 ACGTGGCAGCTTACGCCGACCTGCGGTACCACCAGGACGTG ACGTGGCAGCTTACGCCGACCTGTGGTACCACCAGGACGTG < 41bp 0.716921094275237 0.506979612135387 0.061905444 0.06377512 prediction 0.4198829642797 Functional Loss - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116049206 chr10:116049209 nonsynonymous SNV 0.465 2 24 hm5C_associated_SNPs_89883 0 0 0 0 1 VWA2 chr10:116049248 5'GT 116049248 Upstream 40bp
chr1 246930564 246930564 1 + G A rs7779 246930561 + 246930541 246930581 41 TGATTGACAGACTCAACAAACACGGTATTGAGTTTAGTGTT TGATTGACAGACTCAACAAACACAGTATTGAGTTTAGTGTT < 41bp 0.709939007540652 0.486149768138761 0.8318834 0.39572582 prediction 0.419878015081304 Functional Loss - SCCPDH ENSG00000143653 CDS Human protein_coding chr1:246930561 chr1:246930564 nonsynonymous SNV 0.977 4 24 hm5C_associated_SNPs_89885 0 0 0 0 1 SCCPDH chr1:246930497 3'AG 246930497 Downstream 68bp
chr16 24921688 24921688 1 + C T BRCA 24921685 + 24921665 24921705 41 GGTCCAGAAGGAACAAGCACCACCAGCAGCTCCCTTGTCTC GGTCCAGAAGGAACAAGCACCACTAGCAGCTCCCTTGTCTC < 41bp 0.75510344974803 0.545165372977728 0.050079018 0.03807658 prediction 0.419876153540603 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24921685 chr16:24921688 nonsynonymous SNV 0.071 0 24 hm5C_associated_SNPs_89887 0 0 0 0 1 SLC5A11 chr16:24921627 3'AG 24921627 Downstream 62bp
chr18 19070219 19070219 1 + C T KICH 19070217 + 19070197 19070237 41 AGGAGCGGCTACAGGAGGTGCGCGACAAACTGGGTCTGCAG AGGAGCGGCTACAGGAGGTGCGTGACAAACTGGGTCTGCAG < 41bp 0.709937128701461 0.421049468123419 0.8694438 0.7543583 prediction 0.419874257402921 Functional Loss - GREB1L ENSG00000141449 CDS Human protein_coding chr18:19070217 chr18:19070219 synonymous SNV . 0 23 hm5C_associated_SNPs_89889 0 0 0 0 1 GREB1L chr18:19070312 5'GT 19070312 Upstream 94bp
chrX 48629391 48629391 1 + G A LUAD 48629388 + 48629368 48629408 41 GAGACCAGAAATTTAACCTCCACGAGGTGGGAAAGGAATTT GAGACCAGAAATTTAACCTCCACAAGGTGGGAAAGGAATTT < 41bp 0.709935751230356 0.487323594046992 0.6445384 0.2811365 prediction 0.419871502460713 Functional Loss - GLOD5 ENSG00000171433 CDS Human protein_coding chrX:48629388 chrX:48629391 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_89890 0 0 0 0 1 GLOD5 chrX:48629343 3'AG 48629343 Downstream 49bp
chr22 28397557 28397557 1 + G A rs562735809 28397554 + 28397534 28397574 41 ATCAGGCCCTATGGAGCAAGCACGGAGAGGCTGACATGGGT ATCAGGCCCTATGGAGCAAGCACAGAGAGGCTGACATGGGT < 41bp 0.709935705467733 0.47576363332062 0.6293141 0.20099384 prediction 0.419871410935466 Functional Loss - TTC28-AS1 ENSG00000235954 ncRNA_exonic Human processed_transcript chr22:28397554 chr22:28397557 . . 0 24 hm5C_associated_SNPs_89891 0 0 0 0 1 TTC28-AS1 chr22:28397646 5'GT 28397646 Upstream 90bp
chr19 19329732 19329732 1 + G A SKCM 19329729 + 19329709 19329749 41 CCTTCTCCAACCCAGGCACACAGGATATCACCGATGCCAGC CCTTCTCCAACCCAGGCACACAGAATATCACCGATGCCAGC < 41bp 0.809489017697849 0.599553703646853 0.8639062 0.41435373 prediction 0.419870628101993 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19329729 chr19:19329732 nonsynonymous SNV 0.398 2 24 hm5C_associated_SNPs_89892 0 0 0 0 1 NCAN chr19:19329724 3'AG 19329724 Downstream 9bp
chr13 103518166 103518166 1 + A T LUSC 103518162 + 103518142 103518182 41 CCTGCTGAGTCCGAGAGCCTCCTGAGGGACAACTCTGAGAG CCTGCTGAGTCCGAGAGCCTCCTGTGGGACAACTCTGAGAG < 41bp 0.709924434054759 0.378691608990316 0.20966461 0.14791298 prediction 0.419848868109519 Functional Loss - BIVM-ERCC5;ERCC5 ENSG00000134899;ENSG00000270181 CDS Human other chr13:103518162 chr13:103518166 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_89898 0 0 1 0 1 BIVM-ERCC5;ERCC5 chr13:103518261 5'GT 103518261 Upstream 96bp
chr7 105636743 105636743 1 + C T ESCA 105636741 + 105636721 105636761 41 GACAGTGGAGGCCTCAAAGCCTCCACAGAGCTCCAGGTGAA GACAGTGGAGGCCTCAAAGCCTTCACAGAGCTCCAGGTGAA < 41bp 0.7099203739805 0.398468510428878 0.92917526 0.10884935 prediction 0.419840747960999 Functional Loss - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105636741 chr7:105636743 nonsynonymous SNV 0.513 4 23 hm5C_associated_SNPs_89900 0 0 0 0 2 CDHR3 chr7:105636696 3'AG 105636696 Downstream 48bp
chr7 105636743 105636743 1 + C T ESCA 105636741 + 105636721 105636761 41 GACAGTGGAGGCCTCAAAGCCTCCACAGAGCTCCAGGTGAA GACAGTGGAGGCCTCAAAGCCTTCACAGAGCTCCAGGTGAA < 41bp 0.7099203739805 0.398468510428878 0.92917526 0.10884935 prediction 0.419840747960999 Functional Loss - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105636741 chr7:105636743 nonsynonymous SNV 0.513 4 23 hm5C_associated_SNPs_89900 0 0 0 0 2 CDHR3 chr7:105636800 5'GT 105636800 Upstream 58bp
chr10 121652433 121652433 1 + C T LUSC 121652431 + 121652411 121652451 41 AGTCACCCAGGCCTCCGCTTCTCCGGCCTCCCTGCTCTTAC AGTCACCCAGGCCTCCGCTTCTTCGGCCTCCCTGCTCTTAC < 41bp 0.709918570589681 0.44388439047026 0.402458 0.33519742 prediction 0.419837141179363 Functional Loss - SEC23IP ENSG00000107651 CDS Human protein_coding chr10:121652431 chr10:121652433 nonsynonymous SNV 0.088 1 23 hm5C_associated_SNPs_89903 0 0 1 0 1 SEC23IP chr10:121652457 5'GT 121652457 Upstream 25bp
chr19 50103130 50103130 1 + C T STAD 50103128 + 50103108 50103148 41 GATGGGCCGCCCTTGGCCCCCGCGGCTGCAGTTCCAGGGCC GATGGGCCGCCCTTGGCCCCCGTGGCTGCAGTTCCAGGGCC < 41bp 0.709916982954746 0.463634650993346 0.80645597 0.6540334 prediction 0.419833965909493 Functional Loss - PRR12 ENSG00000126464 CDS Human protein_coding chr19:50103128 chr19:50103130 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_89904 0 0 0 0 1 PRR12 chr19:50103195 5'GT 50103195 Upstream 66bp
chr9 80932646 80932646 1 + G A rs184256039 80932643 + 80932623 80932663 41 ATTAAAAACAATGGAGGTGCCGCGGCCATGGAGAAGCTTAG ATTAAAAACAATGGAGGTGCCGCAGCCATGGAGAAGCTTAG < 41bp 0.773597054757796 0.563684936406745 0.15628836 0.059457332 prediction 0.419824236702103 Functional Loss - PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80932643 chr9:80932646 synonymous SNV . 0 24 hm5C_associated_SNPs_89905 0 0 1 0 2 PSAT1 chr9:80932592 3'AG 80932592 Downstream 55bp
chr9 80932646 80932646 1 + G A rs184256039 80932643 + 80932623 80932663 41 ATTAAAAACAATGGAGGTGCCGCGGCCATGGAGAAGCTTAG ATTAAAAACAATGGAGGTGCCGCAGCCATGGAGAAGCTTAG < 41bp 0.773597054757796 0.563684936406745 0.15628836 0.059457332 prediction 0.419824236702103 Functional Loss - PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80932643 chr9:80932646 synonymous SNV . 0 24 hm5C_associated_SNPs_89905 0 0 1 0 2 PSAT1 chr9:80932720 5'GT 80932720 Upstream 75bp
chr17 37070638 37070638 1 + G C LUAD 37070634 + 37070614 37070654 41 GGCCCTAGCGGGGGCGAGGGCATGGAGCCAGAGCGTCGGGA GGCCCTAGCGGGGGCGAGGGCATGCAGCCAGAGCGTCGGGA < 41bp 0.70991170854387 0.409271480824091 0.6555746 0.48037013 prediction 0.41982341708774 Functional Loss - LASP1 ENSG00000002834 CDS Human protein_coding chr17:37070634 chr17:37070638 nonsynonymous SNV 0.726 0 25 hm5C_associated_SNPs_89906 0 0 1 0 2 LASP1 chr17:37070578 3'AG 37070578 Downstream 61bp
chr17 37070638 37070638 1 + G C LUAD 37070634 + 37070614 37070654 41 GGCCCTAGCGGGGGCGAGGGCATGGAGCCAGAGCGTCGGGA GGCCCTAGCGGGGGCGAGGGCATGCAGCCAGAGCGTCGGGA < 41bp 0.70991170854387 0.409271480824091 0.6555746 0.48037013 prediction 0.41982341708774 Functional Loss - LASP1 ENSG00000002834 CDS Human protein_coding chr17:37070634 chr17:37070638 nonsynonymous SNV 0.726 0 25 hm5C_associated_SNPs_89906 0 0 1 0 2 LASP1 chr17:37070728 5'GT 37070728 Upstream 91bp
chr20 29625956 29625956 1 + G A ACC 29625953 + 29625933 29625973 41 GCATTCAGATGCAATTGGACCAAGAGAACAATGGGAACCAG GCATTCAGATGCAATTGGACCAAAAGAACAATGGGAACCAG < 41bp 0.734255192055723 0.524345151734149 0.8876325 0.63726187 prediction 0.419820080643148 Functional Loss - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29625953 chr20:29625956 nonsynonymous SNV 0.988 1 24 hm5C_associated_SNPs_89908 0 0 0 2 2 FRG1BP;FRG1DP chr20:29625873 3'AG 29625873 Downstream 84bp
chr20 29625956 29625956 1 + G A ACC 29625953 + 29625933 29625973 41 GCATTCAGATGCAATTGGACCAAGAGAACAATGGGAACCAG GCATTCAGATGCAATTGGACCAAAAGAACAATGGGAACCAG < 41bp 0.734255192055723 0.524345151734149 0.8876325 0.63726187 prediction 0.419820080643148 Functional Loss - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29625953 chr20:29625956 nonsynonymous SNV 0.988 1 24 hm5C_associated_SNPs_89908 0 0 0 2 2 FRG1BP;FRG1DP chr20:29625984 5'GT 29625984 Upstream 29bp
chr12 124241506 124241506 1 + C T rs17883456 124241503 + 124241483 124241523 41 TCTGATCATGGAAGGGCTTTCTGCGTTTCTTCACGCCATAC TCTGATCATGGAAGGGCTTTCTGTGTTTCTTCACGCCATAC < 41bp 0.754232202745844 0.544323396771554 0.5212405 0.43114424 prediction 0.41981761194858 Functional Loss - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124241503 chr12:124241506 nonsynonymous SNV 0.962 5 24 hm5C_associated_SNPs_89909 2 0 0 0 1 ATP6V0A2 chr12:124241533 5'GT 124241533 Upstream 28bp
chr11 124564278 124564278 1 + G A LGG 124564275 + 124564255 124564295 41 TGCCTTCCGGGGACACATAGCCAGAGAGGAGGCAAAGAAAA TGCCTTCCGGGGACACATAGCCAAAGAGGAGGCAAAGAAAA < 41bp 0.763678630282009 0.553770270322263 0.6376505 0.34525943 prediction 0.419816719919494 Functional Loss - SPA17 ENSG00000064199 CDS Human protein_coding chr11:124564275 chr11:124564278 nonsynonymous SNV 0.668 4 24 hm5C_associated_SNPs_89910 0 0 1 0 1 SPA17 chr11:124564199 3'AG 124564199 Downstream 80bp
chr21 44182340 44182340 1 + G T LUAD 44182338 + 44182318 44182358 41 TCCCACCTGATGGGTTCAAGCAGATCCGACAGGTGTGTGGG TCCCACCTGATGGGTTCAAGCATATCCGACAGGTGTGTGGG < 41bp 0.709906793328433 0.394687899315552 0.7519871 0.33196807 prediction 0.419813586656866 Functional Loss - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44182338 chr21:44182340 nonsynonymous SNV 0.987 2 23 hm5C_associated_SNPs_89912 0 0 0 0 1 PDE9A chr21:44182349 5'GT 44182349 Upstream 10bp
chr19 2246901 2246901 1 + C T STAD 2246898 + 2246878 2246918 41 CAGATTGACTACCCTGAGATCGCCGAGGGCATCATGCCACG CAGATTGACTACCCTGAGATCGCTGAGGGCATCATGCCACG < 41bp 0.717810778382757 0.507906022105708 0.72650164 0.26680085 prediction 0.419809512554098 Functional Loss - SF3A2 ENSG00000104897 CDS Human protein_coding chr19:2246898 chr19:2246901 synonymous SNV . 0 24 hm5C_associated_SNPs_89914 0 0 1 0 1 SF3A2 chr19:2246881 3'AG 2246881 Downstream 21bp
chr19 45448494 45448494 1 + G C BLCA 45448490 + 45448470 45448510 41 AAGGCCTGGTTCCTCGAATCCAAAGACAGCCTCTTGAAGAA AAGGCCTGGTTCCTCGAATCCAAACACAGCCTCTTGAAGAA < 41bp 0.709904608752756 0.400118146761287 0.18723068 0.07907319 prediction 0.419809217505513 Functional Loss - APOC4 ENSG00000224916;ENSG00000267467 CDS Human other chr19:45448490 chr19:45448494 nonsynonymous SNV 0.028 0 25 hm5C_associated_SNPs_89915 0 0 0 0 1 APOC4 chr19:45448397 3'AG 45448397 Downstream 98bp
chr10 103987455 103987455 1 + C T UCEC 103987453 + 103987433 103987473 41 GGCAGAACTACATGAAGGAACGCAAGGGCTTCAACCTGCAA GGCAGAACTACATGAAGGAACGTAAGGGCTTCAACCTGCAA < 41bp 0.84680538657107 0.63690165791025 0.23000214 0.23798138 prediction 0.41980745732164 Functional Loss - ELOVL3 ENSG00000119915 CDS Human protein_coding chr10:103987453 chr10:103987455 synonymous SNV . 0 23 hm5C_associated_SNPs_89917 0 0 0 0 2 ELOVL3 chr10:103987383 3'AG 103987383 Downstream 73bp
chr10 103987455 103987455 1 + C T UCEC 103987453 + 103987433 103987473 41 GGCAGAACTACATGAAGGAACGCAAGGGCTTCAACCTGCAA GGCAGAACTACATGAAGGAACGTAAGGGCTTCAACCTGCAA < 41bp 0.84680538657107 0.63690165791025 0.23000214 0.23798138 prediction 0.41980745732164 Functional Loss - ELOVL3 ENSG00000119915 CDS Human protein_coding chr10:103987453 chr10:103987455 synonymous SNV . 0 23 hm5C_associated_SNPs_89917 0 0 0 0 2 ELOVL3 chr10:103987514 5'GT 103987514 Upstream 60bp
chr10 5951161 5951161 1 + C T rs61729842 5951159 + 5951139 5951179 41 AGTGCTCTCCGAGTGTGGATCCCGAGAGGGTGCTGTGGAGT AGTGCTCTCCGAGTGTGGATCCTGAGAGGGTGCTGTGGAGT < 41bp 0.709899861826294 0.425832904310128 0.5413599 0.46793586 prediction 0.419799723652587 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5951159 chr10:5951161 synonymous SNV . 0 23 hm5C_associated_SNPs_89921 0 0 1 0 2 FBXO18 chr10:5951122 3'AG 5951122 Downstream 40bp
chr10 5951161 5951161 1 + C T rs61729842 5951159 + 5951139 5951179 41 AGTGCTCTCCGAGTGTGGATCCCGAGAGGGTGCTGTGGAGT AGTGCTCTCCGAGTGTGGATCCTGAGAGGGTGCTGTGGAGT < 41bp 0.709899861826294 0.425832904310128 0.5413599 0.46793586 prediction 0.419799723652587 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5951159 chr10:5951161 synonymous SNV . 0 23 hm5C_associated_SNPs_89921 0 0 1 0 2 FBXO18 chr10:5951257 5'GT 5951257 Upstream 97bp
chr10 5951162 5951162 1 + G A GBM 5951159 + 5951139 5951179 41 AGTGCTCTCCGAGTGTGGATCCCGAGAGGGTGCTGTGGAGT AGTGCTCTCCGAGTGTGGATCCCAAGAGGGTGCTGTGGAGT < 41bp 0.709899861826294 0.446824211804483 0.5413599 0.43781754 prediction 0.419799723652587 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5951159 chr10:5951162 nonsynonymous SNV 0.016 0 24 hm5C_associated_SNPs_89922 0 0 1 0 2 FBXO18 chr10:5951122 3'AG 5951122 Downstream 41bp
chr10 5951162 5951162 1 + G A GBM 5951159 + 5951139 5951179 41 AGTGCTCTCCGAGTGTGGATCCCGAGAGGGTGCTGTGGAGT AGTGCTCTCCGAGTGTGGATCCCAAGAGGGTGCTGTGGAGT < 41bp 0.709899861826294 0.446824211804483 0.5413599 0.43781754 prediction 0.419799723652587 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5951159 chr10:5951162 nonsynonymous SNV 0.016 0 24 hm5C_associated_SNPs_89922 0 0 1 0 2 FBXO18 chr10:5951257 5'GT 5951257 Upstream 96bp
chr15 65219142 65219142 1 + C T UCEC 65219139 + 65219119 65219159 41 ACAGGGCAGCTGAGCACGGGCAGCTGGATGCTCTGGACTTC ACAGGGCAGCTGAGCACGGGCAGTTGGATGCTCTGGACTTC < 41bp 0.709899666942507 0.49456798535451 0.43332505 0.3590526 prediction 0.419799333885014 Functional Loss - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65219139 chr15:65219142 synonymous SNV . 0 24 hm5C_associated_SNPs_89923 0 0 0 0 2 ANKDD1A chr15:65219100 3'AG 65219100 Downstream 43bp
chr15 65219142 65219142 1 + C T UCEC 65219139 + 65219119 65219159 41 ACAGGGCAGCTGAGCACGGGCAGCTGGATGCTCTGGACTTC ACAGGGCAGCTGAGCACGGGCAGTTGGATGCTCTGGACTTC < 41bp 0.709899666942507 0.49456798535451 0.43332505 0.3590526 prediction 0.419799333885014 Functional Loss - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65219139 chr15:65219142 synonymous SNV . 0 24 hm5C_associated_SNPs_89923 0 0 0 0 2 ANKDD1A chr15:65219198 5'GT 65219198 Upstream 57bp
chr17 74382317 74382317 1 + C T UCEC 74382315 + 74382295 74382335 41 CCTGCAGAGCGGCGGAACCACGCGCGGGAGCTGGTGCGGTC CCTGCAGAGCGGCGGAACCACGTGCGGGAGCTGGTGCGGTC < 41bp 0.807193038221227 0.597293837420096 0.49792746 0.75553495 prediction 0.419798401602262 Functional Loss - SPHK1 ENSG00000176170 CDS Human protein_coding chr17:74382315 chr17:74382317 nonsynonymous SNV 0.764 4 23 hm5C_associated_SNPs_89924 0 0 1 0 2 SPHK1 chr17:74382302 3'AG 74382302 Downstream 16bp
chr17 74382317 74382317 1 + C T UCEC 74382315 + 74382295 74382335 41 CCTGCAGAGCGGCGGAACCACGCGCGGGAGCTGGTGCGGTC CCTGCAGAGCGGCGGAACCACGTGCGGGAGCTGGTGCGGTC < 41bp 0.807193038221227 0.597293837420096 0.49792746 0.75553495 prediction 0.419798401602262 Functional Loss - SPHK1 ENSG00000176170 CDS Human protein_coding chr17:74382315 chr17:74382317 nonsynonymous SNV 0.764 4 23 hm5C_associated_SNPs_89924 0 0 1 0 2 SPHK1 chr17:74382396 5'GT 74382396 Upstream 80bp
chr5 23509164 23509164 1 + G A SKCM 23509161 + 23509141 23509181 41 CCATGAGCCCTGAAAAGTCCCAAGAGGAGAGCCCAGAAGAA CCATGAGCCCTGAAAAGTCCCAAAAGGAGAGCCCAGAAGAA < 41bp 0.805563875346448 0.595667135158226 0.27351028 0.105783194 prediction 0.419793480376445 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23509161 chr5:23509164 nonsynonymous SNV 0.526 1 24 hm5C_associated_SNPs_89925 0 0 0 0 1 PRDM9 chr5:23509211 5'GT 23509211 Upstream 48bp
chr5 137221830 137221830 1 + C T SKCM 137221828 + 137221808 137221848 41 GTGAAACTAGAATGCCAGATCTCGGCTATACCTCCACCAAA GTGAAACTAGAATGCCAGATCTTGGCTATACCTCCACCAAA < 41bp 0.709896395624195 0.42090284000454 0.1867558 0.13766092 prediction 0.419792791248391 Functional Loss - MYOT ENSG00000120729 CDS Human protein_coding chr5:137221828 chr5:137221830 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_89928 0 0 0 0 2 MYOT chr5:137221737 3'AG 137221737 Downstream 94bp
chr5 137221830 137221830 1 + C T SKCM 137221828 + 137221808 137221848 41 GTGAAACTAGAATGCCAGATCTCGGCTATACCTCCACCAAA GTGAAACTAGAATGCCAGATCTTGGCTATACCTCCACCAAA < 41bp 0.709896395624195 0.42090284000454 0.1867558 0.13766092 prediction 0.419792791248391 Functional Loss - MYOT ENSG00000120729 CDS Human protein_coding chr5:137221828 chr5:137221830 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_89928 0 0 0 0 2 MYOT chr5:137221902 5'GT 137221902 Upstream 73bp
chr1 28595721 28595721 1 + G A LIHC 28595718 + 28595698 28595738 41 AGAGGGAGAGCCGGGCTCGGCGAGGCCCTCGAGGGCCCAGC AGAGGGAGAGCCGGGCTCGGCGAAGCCCTCGAGGGCCCAGC < 41bp 0.830858931461916 0.620962638690154 0.8909574 0.370207 prediction 0.419792585543524 Functional Loss - SESN2 ENSG00000130766 CDS Human protein_coding chr1:28595718 chr1:28595721 nonsynonymous SNV 0.993 0 24 hm5C_associated_SNPs_89929 0 0 1 0 2 SESN2 chr1:28595694 3'AG 28595694 Downstream 28bp
chr1 28595721 28595721 1 + G A LIHC 28595718 + 28595698 28595738 41 AGAGGGAGAGCCGGGCTCGGCGAGGCCCTCGAGGGCCCAGC AGAGGGAGAGCCGGGCTCGGCGAAGCCCTCGAGGGCCCAGC < 41bp 0.830858931461916 0.620962638690154 0.8909574 0.370207 prediction 0.419792585543524 Functional Loss - SESN2 ENSG00000130766 CDS Human protein_coding chr1:28595718 chr1:28595721 nonsynonymous SNV 0.993 0 24 hm5C_associated_SNPs_89929 0 0 1 0 2 SESN2 chr1:28595759 5'GT 28595759 Upstream 39bp
chr16 28948449 28948449 1 + C T COAD 28948446 + 28948426 28948466 41 AGCCTTGGGGTCCCGGAGCCCGCCGGGAGTGGGTGAATGAC AGCCTTGGGGTCCCGGAGCCCGCTGGGAGTGGGTGAATGAC < 41bp 0.718464692381659 0.50856934311917 0.30728155 0.31441802 prediction 0.419790698524978 Functional Loss - CD19 ENSG00000177455 CDS Human protein_coding chr16:28948446 chr16:28948449 nonsynonymous SNV 0.008 1 24 hm5C_associated_SNPs_89931 0 0 0 0 1 CD19 chr16:28948457 5'GT 28948457 Upstream 9bp
chr19 51983926 51983926 1 + A T LUAD 51983922 + 51983902 51983942 41 CCCAAAGAGCAACCGGCTGGCTGGAGGTTCTAGGTGGGTTA CCCAAAGAGCAACCGGCTGGCTGGTGGTTCTAGGTGGGTTA < 41bp 0.887296825397546 0.677403232921888 0.39055243 0.36712223 prediction 0.419787184951316 Functional Loss - CEACAM18 ENSG00000213822 CDS Human protein_coding chr19:51983922 chr19:51983926 nonsynonymous SNV 0.011 0 25 hm5C_associated_SNPs_89932 0 0 0 0 1 CEACAM18 chr19:51983934 5'GT 51983934 Upstream 9bp
chr2 125262070 125262070 1 + G T LUSC 125262067 + 125262047 125262087 41 CGGGAACCCTGCTGCTGAGCCTGGAGGGTGGAATCCTGAGA CGGGAACCCTGCTGCTGAGCCTGTAGGGTGGAATCCTGAGA < 41bp 0.709890119454619 0.412025045325176 0.33263195 0.23895675 prediction 0.419780238909238 Functional Loss - CNTNAP5 ENSG00000155052 CDS Human protein_coding chr2:125262067 chr2:125262070 stopgain 0.991 0 24 hm5C_associated_SNPs_89935 0 0 0 0 1 CNTNAP5 chr2:125262133 5'GT 125262133 Upstream 64bp
chr7 31008549 31008549 1 + T C LUSC 31008548 + 31008528 31008568 41 AGGAGATGCCCAACACCACCCTGGGTATGGGGCCTAGGAGG AGGAGATGCCCAACACCACCCCGGGTATGGGGCCTAGGAGG < 41bp 0.713289293898547 0.503408816458773 0.41956937 0.69494677 prediction 0.419760954879548 Functional Loss - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31008548 chr7:31008549 nonsynonymous SNV 0.465 0 22 hm5C_associated_SNPs_89938 0 0 0 0 1 GHRHR chr7:31008551 5'GT 31008551 Upstream 3bp
chr1 995136 995136 1 + G C rs182487714 995132 + 995112 995152 41 CCAGAGCGCACCCCGAGCGCCGGCGAGCGGCGCGGTGAGAC CCAGAGCGCACCCCGAGCGCCGGCCAGCGGCGCGGTGAGAC < 41bp 0.858970153386201 0.649090115603348 0.8017444 0.27696437 prediction 0.419760075565707 Functional Loss - AGRN;RNF223 ENSG00000217801 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:995132 chr1:995136 . . 0 25 hm5C_associated_SNPs_89939 0 0 0 0 2 AGRN;RNF223 chr1:995162 5'GT 995162 Upstream 27bp
chr1 995136 995136 1 + G C rs182487714 995132 + 995112 995152 41 CCAGAGCGCACCCCGAGCGCCGGCGAGCGGCGCGGTGAGAC CCAGAGCGCACCCCGAGCGCCGGCCAGCGGCGCGGTGAGAC < 41bp 0.858970153386201 0.649090115603348 0.8017444 0.27696437 prediction 0.419760075565707 Functional Loss - AGRN;RNF223 ENSG00000217801 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:995132 chr1:995136 . . 0 25 hm5C_associated_SNPs_89939 0 0 0 0 2 AGRN;RNF223 chr1:995226 5'GT 995226 Upstream 91bp
chr13 21875730 21875730 1 + G A UCEC 21875727 + 21875707 21875747 41 GTGCTGATCCTTGATGAGCTCTCGGATTCCTTGTGCAGAGT GTGCTGATCCTTGATGAGCTCTCAGATTCCTTGTGCAGAGT < 41bp 0.782045673712259 0.572166846668537 0.07675624 0.07172385 prediction 0.419757654087443 Functional Loss - MIPEPP3 ENSG00000233325 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr13:21875727 chr13:21875730 . . 0 24 hm5C_associated_SNPs_89942 0 0 0 0 1 MIPEPP3 chr13:21875757 5'GT 21875757 Upstream 28bp
chr11 65632076 65632076 1 + A C rs115472389 65632075 + 65632055 65632095 41 ACACTGCTGCAGGCTGTCACCAACACTCAGGTGAGCTGGGA ACACTGCTGCAGGCTGTCACCCACACTCAGGTGAGCTGGGA < 41bp 0.833261658346691 0.623383129903438 0.18265319 0.04096818 prediction 0.419757056886506 Functional Loss - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65632075 chr11:65632076 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_89943 0 0 1 0 1 MUS81 chr11:65632084 5'GT 65632084 Upstream 9bp
chr11 121023708 121023708 1 + C T UCEC 121023705 + 121023685 121023725 41 TACTGCGTGGAGGGCTGTCACTGCGACGCTGGCTACGTCCT TACTGCGTGGAGGGCTGTCACTGTGACGCTGGCTACGTCCT < 41bp 0.728045705373047 0.518168160680627 0.36770514 0.22392845 prediction 0.41975508938484 Functional Loss - TECTA ENSG00000109927 CDS Human protein_coding chr11:121023705 chr11:121023708 synonymous SNV . 0 24 hm5C_associated_SNPs_89944 0 0 0 0 1 TECTA chr11:121023789 5'GT 121023789 Upstream 82bp
chr1 231132923 231132923 1 + C T COAD 231132920 + 231132900 231132940 41 TGGCCGTGTTGAGTGGCTTACTGCTGGAAAGCATCATGGTC TGGCCGTGTTGAGTGGCTTACTGTTGGAAAGCATCATGGTC < 41bp 0.729274644120925 0.519404059058473 0.13571003 0.054027498 prediction 0.419741170124905 Functional Loss - ARV1 ENSG00000173409 CDS Human protein_coding chr1:231132920 chr1:231132923 synonymous SNV . 0 24 hm5C_associated_SNPs_89948 0 0 1 0 2 ARV1 chr1:231132867 3'AG 231132867 Downstream 57bp
chr1 231132923 231132923 1 + C T COAD 231132920 + 231132900 231132940 41 TGGCCGTGTTGAGTGGCTTACTGCTGGAAAGCATCATGGTC TGGCCGTGTTGAGTGGCTTACTGTTGGAAAGCATCATGGTC < 41bp 0.729274644120925 0.519404059058473 0.13571003 0.054027498 prediction 0.419741170124905 Functional Loss - ARV1 ENSG00000173409 CDS Human protein_coding chr1:231132920 chr1:231132923 synonymous SNV . 0 24 hm5C_associated_SNPs_89948 0 0 1 0 2 ARV1 chr1:231133013 5'GT 231133013 Upstream 91bp
chr19 16988446 16988446 1 + C T UCEC 16988443 + 16988423 16988463 41 TCCTCCTGAAACCTGTGTTCCTGCAGAGGTAAGAGGCCCTG TCCTCCTGAAACCTGTGTTCCTGTAGAGGTAAGAGGCCCTG < 41bp 0.70986912366649 0.486703104014739 0.177778 0.20462516 prediction 0.41973824733298 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16988443 chr19:16988446 stopgain 1.000 1 24 hm5C_associated_SNPs_89949 0 0 1 0 2 SIN3B chr19:16988356 3'AG 16988356 Downstream 91bp
chr19 16988446 16988446 1 + C T UCEC 16988443 + 16988423 16988463 41 TCCTCCTGAAACCTGTGTTCCTGCAGAGGTAAGAGGCCCTG TCCTCCTGAAACCTGTGTTCCTGTAGAGGTAAGAGGCCCTG < 41bp 0.70986912366649 0.486703104014739 0.177778 0.20462516 prediction 0.41973824733298 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16988443 chr19:16988446 stopgain 1.000 1 24 hm5C_associated_SNPs_89949 0 0 1 0 2 SIN3B chr19:16988450 5'GT 16988450 Upstream 5bp
chr1 26509852 26509852 1 + C T COAD 26509850 + 26509830 26509870 41 ACGTCAGGTTCCCACTGACTCCCGACTGCAGATCCAGCCTG ACGTCAGGTTCCCACTGACTCCTGACTGCAGATCCAGCCTG < 41bp 0.845164342122147 0.635297051577703 0.08276898 0.079405785 prediction 0.419734581088889 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26509850 chr1:26509852 stopgain 0.003 0 23 hm5C_associated_SNPs_89952 0 0 1 0 3 CNKSR1 chr1:26509837 3'AG 26509837 Downstream 16bp
chr1 26509852 26509852 1 + C T COAD 26509850 + 26509830 26509870 41 ACGTCAGGTTCCCACTGACTCCCGACTGCAGATCCAGCCTG ACGTCAGGTTCCCACTGACTCCTGACTGCAGATCCAGCCTG < 41bp 0.845164342122147 0.635297051577703 0.08276898 0.079405785 prediction 0.419734581088889 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26509850 chr1:26509852 stopgain 0.003 0 23 hm5C_associated_SNPs_89952 0 0 1 0 3 CNKSR1 chr1:26509905 5'GT 26509905 Upstream 54bp
chr1 26509852 26509852 1 + C T COAD 26509850 + 26509830 26509870 41 ACGTCAGGTTCCCACTGACTCCCGACTGCAGATCCAGCCTG ACGTCAGGTTCCCACTGACTCCTGACTGCAGATCCAGCCTG < 41bp 0.845164342122147 0.635297051577703 0.08276898 0.079405785 prediction 0.419734581088889 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26509850 chr1:26509852 stopgain 0.003 0 23 hm5C_associated_SNPs_89952 0 0 1 0 3 CNKSR1 chr1:26509926 5'GT 26509926 Upstream 75bp
chr12 6946232 6946232 1 + G A rs76248966 6946229 + 6946209 6946249 41 CATGAACGCTTCGAGGGGCTCACGGTGCTTAAGGCTGCGCA CATGAACGCTTCGAGGGGCTCACAGTGCTTAAGGCTGCGCA < 41bp 0.811901712853525 0.602036668405442 0.78103715 0.115296334 prediction 0.419730088896165 Functional Loss - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6946229 chr12:6946232 synonymous SNV . 0 24 hm5C_associated_SNPs_89956 0 0 1 0 2 P3H3 chr12:6946149 3'AG 6946149 Downstream 84bp
chr12 6946232 6946232 1 + G A rs76248966 6946229 + 6946209 6946249 41 CATGAACGCTTCGAGGGGCTCACGGTGCTTAAGGCTGCGCA CATGAACGCTTCGAGGGGCTCACAGTGCTTAAGGCTGCGCA < 41bp 0.811901712853525 0.602036668405442 0.78103715 0.115296334 prediction 0.419730088896165 Functional Loss - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6946229 chr12:6946232 synonymous SNV . 0 24 hm5C_associated_SNPs_89956 0 0 1 0 2 P3H3 chr12:6946250 5'GT 6946250 Upstream 19bp
chr3 133475757 133475757 1 + G A SKCM 133475754 + 133475734 133475774 41 CGGAAGCCGGTAGATGAATACAAGGACTGCCACTTGGCCCA CGGAAGCCGGTAGATGAATACAAAGACTGCCACTTGGCCCA < 41bp 0.815106931809921 0.60524336042038 0.7484295 0.12476808 prediction 0.41972714277908 Functional Loss - TF ENSG00000091513 CDS Human protein_coding chr3:133475754 chr3:133475757 synonymous SNV . 0 24 hm5C_associated_SNPs_89958 0 0 1 0 2 TF chr3:133475675 3'AG 133475675 Downstream 83bp
chr3 133475757 133475757 1 + G A SKCM 133475754 + 133475734 133475774 41 CGGAAGCCGGTAGATGAATACAAGGACTGCCACTTGGCCCA CGGAAGCCGGTAGATGAATACAAAGACTGCCACTTGGCCCA < 41bp 0.815106931809921 0.60524336042038 0.7484295 0.12476808 prediction 0.41972714277908 Functional Loss - TF ENSG00000091513 CDS Human protein_coding chr3:133475754 chr3:133475757 synonymous SNV . 0 24 hm5C_associated_SNPs_89958 0 0 1 0 2 TF chr3:133475853 5'GT 133475853 Upstream 97bp
chr10 71690306 71690306 1 + C T LUSC 71690304 + 71690284 71690324 41 GGAGACAGGACAAGCAGGCTCACCGGTGAGTGGCAGGGCTG GGAGACAGGACAAGCAGGCTCATCGGTGAGTGGCAGGGCTG < 41bp 0.70985882485291 0.451679446934361 0.2157414 0.2318905 prediction 0.419717649705819 Functional Loss - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71690304 chr10:71690306 nonsynonymous SNV 0.066 3 23 hm5C_associated_SNPs_89962 0 0 0 0 1 COL13A1 chr10:71690308 5'GT 71690308 Upstream 3bp
chr19 3746600 3746600 1 + C T GBM 3746597 + 3746577 3746617 41 GCCGGCCGGCCCTCAAGGCACTGCGCCAGTGGCTGGCGCCT GCCGGCCGGCCCTCAAGGCACTGTGCCAGTGGCTGGCGCCT < 41bp 0.711445199025413 0.501592910259957 0.5516699 0.26149723 prediction 0.419704577530911 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3746597 chr19:3746600 nonsynonymous SNV 0.914 4 24 hm5C_associated_SNPs_89967 0 0 0 0 1 TJP3 chr19:3746693 5'GT 3746693 Upstream 94bp
chr1 150936790 150936790 1 + G C BLCA 150936786 + 150936766 150936806 41 GAGGTGGGCAGTGTGGAAGGCAAGGAGCTACTCTGTTGCTG GAGGTGGGCAGTGTGGAAGGCAAGCAGCTACTCTGTTGCTG < 41bp 0.70985157467114 0.423875959226365 0.5892121 0.43643925 prediction 0.41970314934228 Functional Loss - SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150936786 chr1:150936790 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_89968 0 0 0 0 2 SETDB1 chr1:150936723 3'AG 150936723 Downstream 68bp
chr1 150936790 150936790 1 + G C BLCA 150936786 + 150936766 150936806 41 GAGGTGGGCAGTGTGGAAGGCAAGGAGCTACTCTGTTGCTG GAGGTGGGCAGTGTGGAAGGCAAGCAGCTACTCTGTTGCTG < 41bp 0.70985157467114 0.423875959226365 0.5892121 0.43643925 prediction 0.41970314934228 Functional Loss - SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150936786 chr1:150936790 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_89968 0 0 0 0 2 SETDB1 chr1:150936726 3'AG 150936726 Downstream 65bp
chr1 150936789 150936789 1 + G T UCEC 150936786 + 150936766 150936806 41 GAGGTGGGCAGTGTGGAAGGCAAGGAGCTACTCTGTTGCTG GAGGTGGGCAGTGTGGAAGGCAATGAGCTACTCTGTTGCTG < 41bp 0.70985157467114 0.318362455173235 0.5892121 0.3246727 prediction 0.41970314934228 Functional Loss - SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150936786 chr1:150936789 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_89969 0 0 0 0 2 SETDB1 chr1:150936723 3'AG 150936723 Downstream 67bp
chr1 150936789 150936789 1 + G T UCEC 150936786 + 150936766 150936806 41 GAGGTGGGCAGTGTGGAAGGCAAGGAGCTACTCTGTTGCTG GAGGTGGGCAGTGTGGAAGGCAATGAGCTACTCTGTTGCTG < 41bp 0.70985157467114 0.318362455173235 0.5892121 0.3246727 prediction 0.41970314934228 Functional Loss - SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150936786 chr1:150936789 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_89969 0 0 0 0 2 SETDB1 chr1:150936726 3'AG 150936726 Downstream 64bp
chr2 162696385 162696385 1 + G A SKCM 162696382 + 162696362 162696402 41 CTCATGACCTTTTCACAGAACTGGATGAGATTTGTTGGCGT CTCATGACCTTTTCACAGAACTGAATGAGATTTGTTGGCGT < 41bp 0.76733065186755 0.557479637934745 0.40110928 0.14491424 prediction 0.419702027865609 Functional Loss - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162696382 chr2:162696385 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_89970 0 0 0 2 2 SLC4A10 chr2:162696299 3'AG 162696299 Downstream 87bp
chr2 162696385 162696385 1 + G A SKCM 162696382 + 162696362 162696402 41 CTCATGACCTTTTCACAGAACTGGATGAGATTTGTTGGCGT CTCATGACCTTTTCACAGAACTGAATGAGATTTGTTGGCGT < 41bp 0.76733065186755 0.557479637934745 0.40110928 0.14491424 prediction 0.419702027865609 Functional Loss - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162696382 chr2:162696385 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_89970 0 0 0 2 2 SLC4A10 chr2:162696437 5'GT 162696437 Upstream 53bp
chr19 33655147 33655147 1 + G A SKCM 33655144 + 33655124 33655164 41 GATGTTGCCATTAGCAACAACAAGAAATGGATCCTGTCTGC GATGTTGCCATTAGCAACAACAAAAAATGGATCCTGTCTGC < 41bp 0.709849116296981 0.466215753961268 0.8839803 0.89716977 prediction 0.419698232593961 Functional Loss - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33655144 chr19:33655147 synonymous SNV . 0 24 hm5C_associated_SNPs_89972 0 0 0 0 2 WDR88 chr19:33655103 3'AG 33655103 Downstream 45bp
chr19 33655147 33655147 1 + G A SKCM 33655144 + 33655124 33655164 41 GATGTTGCCATTAGCAACAACAAGAAATGGATCCTGTCTGC GATGTTGCCATTAGCAACAACAAAAAATGGATCCTGTCTGC < 41bp 0.709849116296981 0.466215753961268 0.8839803 0.89716977 prediction 0.419698232593961 Functional Loss - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33655144 chr19:33655147 synonymous SNV . 0 24 hm5C_associated_SNPs_89972 0 0 0 0 2 WDR88 chr19:33655171 5'GT 33655171 Upstream 25bp
chr11 118754686 118754686 1 + G A SKCM 118754683 + 118754663 118754703 41 CTAACGCTGGAAATGGACCTCGAGAACCTGGAGGACCTGGT CTAACGCTGGAAATGGACCTCGAAAACCTGGAGGACCTGGT < 41bp 0.755616146020197 0.54576963119166 0.6674521 0.41355306 prediction 0.419693029657076 Functional Loss - CXCR5 ENSG00000160683 CDS Human protein_coding chr11:118754683 chr11:118754686 synonymous SNV . 0 24 hm5C_associated_SNPs_89974 0 0 0 0 1 CXCR5 chr11:118754701 5'GT 118754701 Upstream 16bp
chr3 52539159 52539159 1 + G A SKCM 52539156 + 52539136 52539176 41 TCTGGGACCCCTGGGGATCCCAAGGTGAGCCAGCATCCTCC TCTGGGACCCCTGGGGATCCCAAAGTGAGCCAGCATCCTCC < 41bp 0.709842550966118 0.476073606268361 0.8494477 0.39203447 prediction 0.419685101932237 Functional Loss - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52539156 chr3:52539159 synonymous SNV . 0 24 hm5C_associated_SNPs_89975 0 0 0 0 1 STAB1 chr3:52539159 5'GT 52539159 Upstream 1bp
chr12 248431 248431 1 + C T HNSC 248428 + 248408 248448 41 CTGAGCCTGCCGCGCTACCACTGCGAGAACCCAGCCAGCTG CTGAGCCTGCCGCGCTACCACTGTGAGAACCCAGCCAGCTG < 41bp 0.723706519819304 0.513864883150944 0.23872578 0.16547683 prediction 0.419683273336722 Functional Loss - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:248428 chr12:248431 synonymous SNV . 0 24 hm5C_associated_SNPs_89977 0 0 0 0 1 IQSEC3 chr12:248520 5'GT 248520 Upstream 90bp
chr17 72923350 72923350 1 + C T UCEC 72923347 + 72923327 72923367 41 CTCTGGGTCTCTGCTAAAGACTGCGTTCACGTCCACCTGGA CTCTGGGTCTCTGCTAAAGACTGTGTTCACGTCCACCTGGA < 41bp 0.739399188490768 0.529559049673904 0.13766515 0.092705816 prediction 0.419680277633727 Functional Loss - OTOP2 ENSG00000183034 CDS Human protein_coding chr17:72923347 chr17:72923350 synonymous SNV . 0 24 hm5C_associated_SNPs_89978 0 0 0 0 2 OTOP2 chr17:72923318 3'AG 72923318 Downstream 33bp
chr17 72923350 72923350 1 + C T UCEC 72923347 + 72923327 72923367 41 CTCTGGGTCTCTGCTAAAGACTGCGTTCACGTCCACCTGGA CTCTGGGTCTCTGCTAAAGACTGTGTTCACGTCCACCTGGA < 41bp 0.739399188490768 0.529559049673904 0.13766515 0.092705816 prediction 0.419680277633727 Functional Loss - OTOP2 ENSG00000183034 CDS Human protein_coding chr17:72923347 chr17:72923350 synonymous SNV . 0 24 hm5C_associated_SNPs_89978 0 0 0 0 2 OTOP2 chr17:72923376 5'GT 72923376 Upstream 27bp
chrX 100081744 100081744 1 + G A UCEC 100081741 + 100081721 100081761 41 TGGCCCTGGTTCCTTAGCTCCTGGAGGTAAGTTTCATTTAG TGGCCCTGGTTCCTTAGCTCCTGAAGGTAAGTTTCATTTAG < 41bp 0.810057752270553 0.60021904527022 0.43196106 0.1410496 prediction 0.419677414000665 Functional Loss - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100081741 chrX:100081744 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_89980 0 0 1 0 2 CSTF2 chrX:100081674 3'AG 100081674 Downstream 71bp
chrX 100081744 100081744 1 + G A UCEC 100081741 + 100081721 100081761 41 TGGCCCTGGTTCCTTAGCTCCTGGAGGTAAGTTTCATTTAG TGGCCCTGGTTCCTTAGCTCCTGAAGGTAAGTTTCATTTAG < 41bp 0.810057752270553 0.60021904527022 0.43196106 0.1410496 prediction 0.419677414000665 Functional Loss - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100081741 chrX:100081744 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_89980 0 0 1 0 2 CSTF2 chrX:100081746 5'GT 100081746 Upstream 3bp
chr9 112642901 112642901 1 + G T LUSC 112642899 + 112642879 112642919 41 ACTGCCGAAGAGGAGGAAGCCAGGAGGCGGCAGTCTGAAGA ACTGCCGAAGAGGAGGAAGCCATGAGGCGGCAGTCTGAAGA < 41bp 0.913905722994901 0.704067591581435 0.8978424 0.40947714 prediction 0.419676262826932 Functional Loss - PALM2;PALM2-AKAP2 ENSG00000157654;ENSG00000241978;ENSG00000243444 CDS Human other chr9:112642899 chr9:112642901 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_89981 0 0 0 0 2 PALM2;PALM2-AKAP2 chr9:112642831 3'AG 112642831 Downstream 71bp
chr9 112642901 112642901 1 + G T LUSC 112642899 + 112642879 112642919 41 ACTGCCGAAGAGGAGGAAGCCAGGAGGCGGCAGTCTGAAGA ACTGCCGAAGAGGAGGAAGCCATGAGGCGGCAGTCTGAAGA < 41bp 0.913905722994901 0.704067591581435 0.8978424 0.40947714 prediction 0.419676262826932 Functional Loss - PALM2;PALM2-AKAP2 ENSG00000157654;ENSG00000241978;ENSG00000243444 CDS Human other chr9:112642899 chr9:112642901 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_89981 0 0 0 0 2 PALM2;PALM2-AKAP2 chr9:112642961 5'GT 112642961 Upstream 61bp
chr15 25472176 25472176 1 + C T rs1883006 25472174 + 25472154 25472194 41 CTCAGGACCTTCCTAGTGCCCTCGGCTCCTGCACTGAGCTC CTCAGGACCTTCCTAGTGCCCTTGGCTCCTGCACTGAGCTC < 41bp 0.709837483522028 0.49870451174894 0.2550992 0.22813687 prediction 0.419674967044056 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25472174 chr15:25472176 . . 0 23 hm5C_associated_SNPs_89983 0 0 0 0 1 SNHG14 chr15:25472196 5'GT 25472196 Upstream 21bp
chr17 7211848 7211848 1 + G A rs187065604 7211845 + 7211825 7211865 41 CTTCCCAACCTCAAGGGCCCCAGGAGCTTTCCTGAAAAACC CTTCCCAACCTCAAGGGCCCCAGAAGCTTTCCTGAAAAACC < 41bp 0.752178201419524 0.542341871810627 0.38588953 0.35168985 prediction 0.419672659217793 Functional Loss - EIF5A ENSG00000132507 UTR5 Human protein_coding chr17:7211845 chr17:7211848 . . 0 24 hm5C_associated_SNPs_89984 0 0 1 0 1 EIF5A chr17:7211894 5'GT 7211894 Upstream 47bp
chr1 32687547 32687547 1 + G T LUSC 32687545 + 32687525 32687565 41 CTCATGAACCCGCTGCAGGCCGGCGGAGGCCCGCTTCAGCA CTCATGAACCCGCTGCAGGCCGTCGGAGGCCCGCTTCAGCA < 41bp 0.887106071675797 0.677269977086309 0.7990099 0.3840447 prediction 0.419672189178975 Functional Loss - TMEM234 ENSG00000160055 CDS Human protein_coding chr1:32687545 chr1:32687547 nonsynonymous SNV 0.061 0 23 hm5C_associated_SNPs_89985 0 0 0 0 1 EIF3I chr1:32687633 5'GT 32687633 Upstream 87bp
chr1 226736738 226736738 1 + G T LUSC 226736734 + 226736714 226736754 41 GAGAAGAAGGGCCCCCTGCGCGCCGCCATCCCCTACATGCC GAGAAGAAGGGCCCCCTGCGCGCCTCCATCCCCTACATGCC < 41bp 0.719520598836593 0.509685408764334 0.056489497 0.022452384 prediction 0.419670380144518 Functional Loss - STUM ENSG00000203685 CDS Human protein_coding chr1:226736734 chr1:226736738 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_89987 0 0 0 0 1 STUM chr1:226736807 5'GT 226736807 Upstream 70bp
chr4 71467327 71467327 1 + G A UCEC 71467324 + 71467304 71467344 41 TGCAGGAAGGAGAACTGCCTCTGGTTCAGCAGCAGGTGGCA TGCAGGAAGGAGAACTGCCTCTGATTCAGCAGCAGGTGGCA < 41bp 0.81752358195828 0.607689144460424 0.18696302 0.10429412 prediction 0.419668874995711 Functional Loss - AMBN ENSG00000178522 CDS Human protein_coding chr4:71467324 chr4:71467327 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_89988 0 0 0 0 1 AMBN chr4:71467371 5'GT 71467371 Upstream 45bp
chr6 40347075 40347075 1 + C T UCEC 40347073 + 40347053 40347093 41 AAGAGGAGGGAGGCAGTCTGCGCGCACCGCCATTTTCTAGG AAGAGGAGGGAGGCAGTCTGCGTGCACCGCCATTTTCTAGG < 41bp 0.761401164220039 0.551569196549828 0.2630403 0.2830611 prediction 0.419663935340423 Functional Loss - TDRG1 ENSG00000204091 ncRNA_exonic Human antisense chr6:40347073 chr6:40347075 . . 0 23 hm5C_associated_SNPs_89991 0 0 0 0 1 TDRG1 chr6:40347021 3'AG 40347021 Downstream 55bp
chr19 55106850 55106850 1 + T C COAD 55106849 + 55106829 55106869 41 GGTCTCTACCCAGTGATCTCCTGGAGCTCCTGGTCCTAGGT GGTCTCTACCCAGTGATCTCCCGGAGCTCCTGGTCCTAGGT < 41bp 0.816539868849279 0.606710741099397 0.87531847 0.93787104 prediction 0.419658255499765 Functional Loss - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55106849 chr19:55106850 nonsynonymous SNV 0.212 3 22 hm5C_associated_SNPs_89994 0 0 0 0 1 LILRA1 chr19:55106867 5'GT 55106867 Upstream 18bp
chr20 30411298 30411298 1 + C T rs142620954 30411295 + 30411275 30411315 41 CCCAGATGATTGCCCGCCACCTCCGGCCCCCTTCCCTCACC CCCAGATGATTGCCCGCCACCTCTGGCCCCCTTCCCTCACC < 41bp 0.743362823596225 0.533537692140345 0.065832704 0.01973778 prediction 0.419650262911761 Functional Loss - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30411295 chr20:30411298 nonsynonymous SNV 0.852 2 24 hm5C_associated_SNPs_89997 2 0 0 0 1 MYLK2 chr20:30411280 3'AG 30411280 Downstream 19bp
chr17 12639642 12639642 1 + G A SKCM 12639639 + 12639619 12639659 41 ATACCCCTTCGACAGGTTCTCTGGGGACAAACCAGGTAAAA ATACCCCTTCGACAGGTTCTCTGAGGACAAACCAGGTAAAA < 41bp 0.726206569420937 0.516386916179605 0.8688052 0.5225609 prediction 0.419639306482665 Functional Loss - MYOCD ENSG00000141052;ENSG00000273452 CDS Human other chr17:12639639 chr17:12639642 nonsynonymous SNV 0.087 1 24 hm5C_associated_SNPs_89998 0 0 0 0 1 MYOCD chr17:12639653 5'GT 12639653 Upstream 12bp
chr11 111425979 111425979 1 + G A SKCM 111425976 + 111425956 111425996 41 CTGTACTTCCAGAAGAAACACAGGAAGAAGATGCCAAAAAA CTGTACTTCCAGAAGAAACACAGAAAGAAGATGCCAAAAAA < 41bp 0.790656652164209 0.580837604250013 0.56004655 0.44920307 prediction 0.419638095828392 Functional Loss - LAYN ENSG00000204381 CDS Human protein_coding chr11:111425976 chr11:111425979 nonsynonymous SNV 0.986 0 24 hm5C_associated_SNPs_89999 0 0 0 0 2 LAYN chr11:111425932 3'AG 111425932 Downstream 48bp
chr11 111425979 111425979 1 + G A SKCM 111425976 + 111425956 111425996 41 CTGTACTTCCAGAAGAAACACAGGAAGAAGATGCCAAAAAA CTGTACTTCCAGAAGAAACACAGAAAGAAGATGCCAAAAAA < 41bp 0.790656652164209 0.580837604250013 0.56004655 0.44920307 prediction 0.419638095828392 Functional Loss - LAYN ENSG00000204381 CDS Human protein_coding chr11:111425976 chr11:111425979 nonsynonymous SNV 0.986 0 24 hm5C_associated_SNPs_89999 0 0 0 0 2 LAYN chr11:111426015 5'GT 111426015 Upstream 37bp
chr2 209212732 209212732 1 + G A LUAD 209212729 + 209212709 209212749 41 GCAAGGAGGGGACCGAGAATCAAGGCGTTGAGCCTCAAGGT GCAAGGAGGGGACCGAGAATCAAAGCGTTGAGCCTCAAGGT < 41bp 0.709818124428207 0.477749299203312 0.90551126 0.8537456 prediction 0.419636248856414 Functional Loss - PIKFYVE ENSG00000115020 CDS Human protein_coding chr2:209212729 chr2:209212732 nonsynonymous SNV 0.948 1 24 hm5C_associated_SNPs_90000 0 0 1 0 1 PIKFYVE chr2:209212747 5'GT 209212747 Upstream 16bp
chr16 57155044 57155044 1 + T C LIHC 57155043 + 57155023 57155063 41 GACAATGACGGGGGCCATGACTTCATCGGCGAGTTCCAGAC GACAATGACGGGGGCCATGACCTCATCGGCGAGTTCCAGAC < 41bp 0.709813638404792 0.430023391217495 0.3402002 0.11685589 prediction 0.419627276809584 Functional Loss - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57155043 chr16:57155044 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_90002 0 0 0 0 2 CPNE2 chr16:57155005 3'AG 57155005 Downstream 40bp
chr16 57155044 57155044 1 + T C LIHC 57155043 + 57155023 57155063 41 GACAATGACGGGGGCCATGACTTCATCGGCGAGTTCCAGAC GACAATGACGGGGGCCATGACCTCATCGGCGAGTTCCAGAC < 41bp 0.709813638404792 0.430023391217495 0.3402002 0.11685589 prediction 0.419627276809584 Functional Loss - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57155043 chr16:57155044 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_90002 0 0 0 0 2 CPNE2 chr16:57155103 5'GT 57155103 Upstream 60bp
chr9 37424938 37424938 1 + C T UCEC 37424935 + 37424915 37424955 41 CACGGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAG CACGGCCTGCTCTGCCTCCTCTCTGACCACGTGGACAAGAG < 41bp 0.748295563686405 0.538483664727806 0.8808266 0.21859178 prediction 0.419623797917199 Functional Loss - GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424935 chr9:37424938 synonymous SNV . 0 24 hm5C_associated_SNPs_90005 0 0 1 0 2 GRHPR chr9:37424842 3'AG 37424842 Downstream 97bp
chr9 37424938 37424938 1 + C T UCEC 37424935 + 37424915 37424955 41 CACGGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAG CACGGCCTGCTCTGCCTCCTCTCTGACCACGTGGACAAGAG < 41bp 0.748295563686405 0.538483664727806 0.8808266 0.21859178 prediction 0.419623797917199 Functional Loss - GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424935 chr9:37424938 synonymous SNV . 0 24 hm5C_associated_SNPs_90005 0 0 1 0 2 GRHPR chr9:37424972 5'GT 37424972 Upstream 35bp
chr11 64803055 64803055 1 + C T SKCM 64803053 + 64803033 64803073 41 CTCCTCTTTAACTGTGAGAGCACCGAGGAGGCATCTGGTTC CTCCTCTTTAACTGTGAGAGCATCGAGGAGGCATCTGGTTC < 41bp 0.709809589342236 0.439718899023814 0.29877365 0.30326104 prediction 0.419619178684472 Functional Loss - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64803053 chr11:64803055 nonsynonymous SNV 0.011 0 23 hm5C_associated_SNPs_90006 0 0 0 0 2 SNX15 chr11:64802992 3'AG 64802992 Downstream 64bp
chr11 64803055 64803055 1 + C T SKCM 64803053 + 64803033 64803073 41 CTCCTCTTTAACTGTGAGAGCACCGAGGAGGCATCTGGTTC CTCCTCTTTAACTGTGAGAGCATCGAGGAGGCATCTGGTTC < 41bp 0.709809589342236 0.439718899023814 0.29877365 0.30326104 prediction 0.419619178684472 Functional Loss - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64803053 chr11:64803055 nonsynonymous SNV 0.011 0 23 hm5C_associated_SNPs_90006 0 0 0 0 2 SNX15 chr11:64803135 5'GT 64803135 Upstream 81bp
chr11 64803056 64803056 1 + C T UCEC 64803053 + 64803033 64803073 41 CTCCTCTTTAACTGTGAGAGCACCGAGGAGGCATCTGGTTC CTCCTCTTTAACTGTGAGAGCACTGAGGAGGCATCTGGTTC < 41bp 0.709809589342236 0.494885564078039 0.29877365 0.29762965 prediction 0.419619178684472 Functional Loss - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64803053 chr11:64803056 synonymous SNV . 0 24 hm5C_associated_SNPs_90007 0 0 0 0 2 SNX15 chr11:64802992 3'AG 64802992 Downstream 65bp
chr11 64803056 64803056 1 + C T UCEC 64803053 + 64803033 64803073 41 CTCCTCTTTAACTGTGAGAGCACCGAGGAGGCATCTGGTTC CTCCTCTTTAACTGTGAGAGCACTGAGGAGGCATCTGGTTC < 41bp 0.709809589342236 0.494885564078039 0.29877365 0.29762965 prediction 0.419619178684472 Functional Loss - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64803053 chr11:64803056 synonymous SNV . 0 24 hm5C_associated_SNPs_90007 0 0 0 0 2 SNX15 chr11:64803135 5'GT 64803135 Upstream 80bp
chr8 57125442 57125442 1 + G A CESC 57125439 + 57125419 57125459 41 GAAGAAACTCATGCACCAAACTCGAACTGGGTATATGTGAT GAAGAAACTCATGCACCAAACTCAAACTGGGTATATGTGAT < 41bp 0.728169166932043 0.518360712800736 0.70371735 0.115323484 prediction 0.419616908262615 Functional Loss - CHCHD7 ENSG00000170791 CDS Human protein_coding chr8:57125439 chr8:57125442 nonsynonymous SNV 0.011 0 24 hm5C_associated_SNPs_90008 0 0 1 0 2 CHCHD7 chr8:57125448 5'GT 57125448 Upstream 7bp
chr8 57125442 57125442 1 + G A CESC 57125439 + 57125419 57125459 41 GAAGAAACTCATGCACCAAACTCGAACTGGGTATATGTGAT GAAGAAACTCATGCACCAAACTCAAACTGGGTATATGTGAT < 41bp 0.728169166932043 0.518360712800736 0.70371735 0.115323484 prediction 0.419616908262615 Functional Loss - CHCHD7 ENSG00000170791 CDS Human protein_coding chr8:57125439 chr8:57125442 nonsynonymous SNV 0.011 0 24 hm5C_associated_SNPs_90008 0 0 1 0 2 CHCHD7 chr8:57125468 5'GT 57125468 Upstream 27bp
chr3 183907504 183907504 1 + C T UCEC 183907501 + 183907481 183907521 41 AGGAGCGGCTGCTCAACCAGCAGCGTGAATATGAGGCGCAG AGGAGCGGCTGCTCAACCAGCAGTGTGAATATGAGGCGCAG < 41bp 0.718936596910318 0.5091282637091 0.5268598 0.29761767 prediction 0.419616666402437 Functional Loss - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183907501 chr3:183907504 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_90009 0 0 0 0 1 ABCF3 chr3:183907545 5'GT 183907545 Upstream 42bp
chr11 34988314 34988314 1 + C T COAD 34988311 + 34988291 34988331 41 CCACAGCTGGACCATCTTATCCCCGGCCTGTGATCCCACCA CCACAGCTGGACCATCTTATCCCTGGCCTGTGATCCCACCA < 41bp 0.745519586775436 0.535711451766145 0.20171285 0.09693563 prediction 0.419616270018581 Functional Loss - PDHX ENSG00000110435 CDS Human protein_coding chr11:34988311 chr11:34988314 nonsynonymous SNV 0.020 4 24 hm5C_associated_SNPs_90010 0 0 1 0 1 PDHX chr11:34988361 5'GT 34988361 Upstream 48bp
chrX 110366492 110366492 1 + G A SKCM 110366489 + 110366469 110366509 41 CAGGCTTCGCTCTATCTTCCCAGGAGGAGGGGATAAAAGTA CAGGCTTCGCTCTATCTTCCCAGAAGGAGGGGATAAAAGTA < 41bp 0.795929769346466 0.586124226740476 0.83401054 0.32945356 prediction 0.419611085211981 Functional Loss - PAK3 ENSG00000077264 CDS Human protein_coding chrX:110366489 chrX:110366492 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_90012 0 0 0 0 1 PAK3 chrX:110366506 5'GT 110366506 Upstream 15bp
chr1 233511764 233511764 1 + G T UCEC 233511762 + 233511742 233511782 41 TTTAAGAAAAAAGGTTGTACCTGGGGACCAAATTCCATTCA TTTAAGAAAAAAGGTTGTACCTTGGGACCAAATTCCATTCA < 41bp 0.709805523709876 0.375266356473761 0.52510715 0.015544713 prediction 0.419611047419751 Functional Loss - MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233511762 chr1:233511764 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_90013 0 0 1 0 1 MAP3K21 chr1:233511812 5'GT 233511812 Upstream 49bp
chr12 110019277 110019277 1 + C T COAD 110019275 + 110019255 110019295 41 TTGGGCTCCAGCGCCGCCTACTCGGTGTGTCTGGCAGCAGC TTGGGCTCCAGCGCCGCCTACTTGGTGTGTCTGGCAGCAGC < 41bp 0.858474798622786 0.648670992049318 0.4001489 0.4679686 prediction 0.419607613146936 Functional Loss - MVK ENSG00000110921 CDS Human protein_coding chr12:110019275 chr12:110019277 nonsynonymous SNV 0.964 3 23 hm5C_associated_SNPs_90014 0 0 1 0 2 MVK chr12:110019200 3'AG 110019200 Downstream 78bp
chr12 110019277 110019277 1 + C T COAD 110019275 + 110019255 110019295 41 TTGGGCTCCAGCGCCGCCTACTCGGTGTGTCTGGCAGCAGC TTGGGCTCCAGCGCCGCCTACTTGGTGTGTCTGGCAGCAGC < 41bp 0.858474798622786 0.648670992049318 0.4001489 0.4679686 prediction 0.419607613146936 Functional Loss - MVK ENSG00000110921 CDS Human protein_coding chr12:110019275 chr12:110019277 nonsynonymous SNV 0.964 3 23 hm5C_associated_SNPs_90014 0 0 1 0 2 MVK chr12:110019355 5'GT 110019355 Upstream 79bp
chr7 73973284 73973284 1 + G T STAD 73973281 + 73973261 73973301 41 GATCATCGAGGGGCTGCCCCCAGGAATCCCGTTCCGAAAGC GATCATCGAGGGGCTGCCCCCAGTAATCCCGTTCCGAAAGC < 41bp 0.936164005495594 0.726361616641243 0.9109982 0.2022889 prediction 0.419604777708702 Functional Loss - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73973281 chr7:73973284 nonsynonymous SNV 0.807 4 24 hm5C_associated_SNPs_90017 0 0 1 0 2 GTF2IRD1 chr7:73973191 3'AG 73973191 Downstream 94bp
chr7 73973284 73973284 1 + G T STAD 73973281 + 73973261 73973301 41 GATCATCGAGGGGCTGCCCCCAGGAATCCCGTTCCGAAAGC GATCATCGAGGGGCTGCCCCCAGTAATCCCGTTCCGAAAGC < 41bp 0.936164005495594 0.726361616641243 0.9109982 0.2022889 prediction 0.419604777708702 Functional Loss - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73973281 chr7:73973284 nonsynonymous SNV 0.807 4 24 hm5C_associated_SNPs_90017 0 0 1 0 2 GTF2IRD1 chr7:73973374 5'GT 73973374 Upstream 91bp
chr3 169756775 169756775 1 + A C rs536805495 169756774 + 169756754 169756794 41 ACGGACCGGGCCTCCGGAGGCAGGTTCGGCTGGAAGGAACC ACGGACCGGGCCTCCGGAGGCCGGTTCGGCTGGAAGGAACC < 41bp 0.753396059445792 0.543595791960589 0.9036678 0.51005363 prediction 0.419600534970405 Functional Loss - GPR160 ENSG00000173890 UTR5 Human protein_coding chr3:169756774 chr3:169756775 . . 0 22 hm5C_associated_SNPs_90021 0 0 1 0 2 GPR160 chr3:169756703 3'AG 169756703 Downstream 73bp
chr3 169756775 169756775 1 + A C rs536805495 169756774 + 169756754 169756794 41 ACGGACCGGGCCTCCGGAGGCAGGTTCGGCTGGAAGGAACC ACGGACCGGGCCTCCGGAGGCCGGTTCGGCTGGAAGGAACC < 41bp 0.753396059445792 0.543595791960589 0.9036678 0.51005363 prediction 0.419600534970405 Functional Loss - GPR160 ENSG00000173890 UTR5 Human protein_coding chr3:169756774 chr3:169756775 . . 0 22 hm5C_associated_SNPs_90021 0 0 1 0 2 GPR160 chr3:169756831 5'GT 169756831 Upstream 57bp
chr22 29879447 29879447 1 + C T UCEC 29879444 + 29879424 29879464 41 AGGAGGAGATAACTGAGTACCGGCGTCAGCTGCAGGCCAGG AGGAGGAGATAACTGAGTACCGGTGTCAGCTGCAGGCCAGG < 41bp 0.724820276077889 0.515022380204033 0.87928736 0.409608 prediction 0.41959579174771 Functional Loss - NEFH ENSG00000100285 CDS Human protein_coding chr22:29879444 chr22:29879447 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_90022 0 0 0 0 1 NEFH chr22:29879364 3'AG 29879364 Downstream 84bp
chr5 150838389 150838389 1 + C T rs142413607 150838387 + 150838367 150838407 41 GACTTCGGAATGAAGACTACCACGACTACAGCTCCACGGAC GACTTCGGAATGAAGACTACCATGACTACAGCTCCACGGAC < 41bp 0.858946134462629 0.649149498883338 0.0689494 0.08985776 prediction 0.419593271158581 Functional Loss - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150838387 chr5:150838389 synonymous SNV . 0 23 hm5C_associated_SNPs_90023 0 0 1 0 1 SLC36A1 chr5:150838349 3'AG 150838349 Downstream 41bp
chr2 228147117 228147117 1 + G A SKCM 228147114 + 228147094 228147134 41 AACGGGGCCAAAGGGAGACCCAGGAATTCCAGGCTTGGATA AACGGGGCCAAAGGGAGACCCAGAAATTCCAGGCTTGGATA < 41bp 0.709796197927821 0.466676699420384 0.92946684 0.84094286 prediction 0.419592395855641 Functional Loss - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228147114 chr2:228147117 nonsynonymous SNV 0.969 5 24 hm5C_associated_SNPs_90024 0 0 0 0 1 COL4A3 chr2:228147081 3'AG 228147081 Downstream 37bp
chr5 126770487 126770487 1 + G A STAD 126770484 + 126770464 126770504 41 CGGCCTGTGTGACTGCTTGCCTGGCTTCACAGGCGCCCTCT CGGCCTGTGTGACTGCTTGCCTGACTTCACAGGCGCCCTCT < 41bp 0.709795982906053 0.457294491681517 0.2824385 0.081986934 prediction 0.419591965812105 Functional Loss - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126770484 chr5:126770487 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_90025 0 0 0 0 1 MEGF10 chr5:126770513 5'GT 126770513 Upstream 27bp
chrX 48547079 48547079 1 + G C BLCA 48547078 + 48547058 48547098 41 CGCCGCCCCCACCGCCATCTCGAGGAGGGAACCAGCTCCCC CGCCGCCCCCACCGCCATCTCCAGGAGGGAACCAGCTCCCC < 41bp 0.90436867921283 0.694573979759392 0.9345729 0.92863655 prediction 0.419589398906877 Functional Loss - WAS ENSG00000015285 CDS Human protein_coding chrX:48547078 chrX:48547079 nonsynonymous SNV 0.955 3 22 hm5C_associated_SNPs_90029 0 0 0 0 1 WAS chrX:48547049 3'AG 48547049 Downstream 31bp
chr11 6291150 6291150 1 + G T COAD 6291146 + 6291126 6291166 41 TGCAAGGCGGTTTCCTACCTCATGGGTGGGTGAGACAACCA TGCAAGGCGGTTTCCTACCTCATGTGTGGGTGAGACAACCA < 41bp 0.711687744196567 0.501895943589771 0.23617315 0.09586334 prediction 0.419583601213592 Functional Loss - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6291146 chr11:6291150 nonsynonymous SNV 0.986 4 25 hm5C_associated_SNPs_90032 0 0 0 0 1 CCKBR chr11:6291150 5'GT 6291150 Upstream 1bp
chr11 75279804 75279804 1 + G T THYM 75279801 + 75279781 75279821 41 TGGGATGAGAAATTCCACCACAAGATGGTGGACAACCGTGG TGGGATGAGAAATTCCACCACAATATGGTGGACAACCGTGG < 41bp 0.709786289872266 0.303827898374659 0.21143636 0.145452 prediction 0.419572579744533 Functional Loss - SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279801 chr11:75279804 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_90033 0 0 1 0 2 SERPINH1 chr11:75279776 3'AG 75279776 Downstream 29bp
chr11 75279804 75279804 1 + G T THYM 75279801 + 75279781 75279821 41 TGGGATGAGAAATTCCACCACAAGATGGTGGACAACCGTGG TGGGATGAGAAATTCCACCACAATATGGTGGACAACCGTGG < 41bp 0.709786289872266 0.303827898374659 0.21143636 0.145452 prediction 0.419572579744533 Functional Loss - SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279801 chr11:75279804 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_90033 0 0 1 0 2 SERPINH1 chr11:75279874 5'GT 75279874 Upstream 71bp
chr20 44571753 44571753 1 + G T LUSC 44571750 + 44571730 44571770 41 CTGCAGGCATTGAGCCTCCACGGGAGTCTTTCAACCGCTGG CTGCAGGCATTGAGCCTCCACGGTAGTCTTTCAACCGCTGG < 41bp 0.939614319948744 0.729829502880021 0.39112324 0.1151706 prediction 0.419569634137445 Functional Loss - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44571750 chr20:44571753 stopgain 0.920 1 24 hm5C_associated_SNPs_90035 0 0 1 0 1 PCIF1 chr20:44571736 3'AG 44571736 Downstream 18bp
chr11 397656 397656 1 + G A SKCM 397653 + 397633 397673 41 TGCTACAGCGATGCAGCCGCCAAGAAGCAGGTGACCACCCC TGCTACAGCGATGCAGCCGCCAAAAAGCAGGTGACCACCCC < 41bp 0.788140064999759 0.578355536641871 0.63825035 0.5519325 prediction 0.419569056715778 Functional Loss - PKP3 ENSG00000184363 CDS Human protein_coding chr11:397653 chr11:397656 synonymous SNV . 0 24 hm5C_associated_SNPs_90036 0 0 0 0 1 PKP3 chr11:397662 5'GT 397662 Upstream 7bp
chr10 106960916 106960916 1 + G A LUSC 106960913 + 106960893 106960933 41 ATGGGAGAAAGGAAAATATTCAAGAAACGTAAGCCAGGAGC ATGGGAGAAAGGAAAATATTCAAAAAACGTAAGCCAGGAGC < 41bp 0.709782991685314 0.480935875932847 0.7003309 0.28542462 prediction 0.419565983370627 Functional Loss - SORCS3 ENSG00000156395 CDS Human protein_coding chr10:106960913 chr10:106960916 synonymous SNV . 0 24 hm5C_associated_SNPs_90037 0 0 0 0 2 SORCS3 chr10:106960878 3'AG 106960878 Downstream 39bp
chr10 106960916 106960916 1 + G A LUSC 106960913 + 106960893 106960933 41 ATGGGAGAAAGGAAAATATTCAAGAAACGTAAGCCAGGAGC ATGGGAGAAAGGAAAATATTCAAAAAACGTAAGCCAGGAGC < 41bp 0.709782991685314 0.480935875932847 0.7003309 0.28542462 prediction 0.419565983370627 Functional Loss - SORCS3 ENSG00000156395 CDS Human protein_coding chr10:106960913 chr10:106960916 synonymous SNV . 0 24 hm5C_associated_SNPs_90037 0 0 0 0 2 SORCS3 chr10:106961011 5'GT 106961011 Upstream 96bp
chr8 48878772 48878772 1 + C T rs17334388 48878769 + 48878749 48878789 41 ATTGACCAGCTCATCACCATCAGCGGCATGGTGATCAGGAC ATTGACCAGCTCATCACCATCAGTGGCATGGTGATCAGGAC < 41bp 0.75765610479726 0.54787368371676 0.7789186 0.4558377 prediction 0.419564842161 Functional Loss - MCM4 ENSG00000104738 CDS Human protein_coding chr8:48878769 chr8:48878772 synonymous SNV . 0 24 hm5C_associated_SNPs_90038 1 0 1 0 1 MCM4 chr8:48878747 3'AG 48878747 Downstream 26bp
chr17 2908678 2908678 1 + C T KIRC 2908676 + 2908656 2908696 41 CACTCAGGTCTCTGTCACTGCGCGGGAAGATGTGCCCACCT CACTCAGGTCTCTGTCACTGCGTGGGAAGATGTGCCCACCT < 41bp 0.709780493458009 0.4356243859308 0.35521978 0.44886395 prediction 0.419560986916018 Functional Loss - RAP1GAP2 ENSG00000132359 CDS Human protein_coding chr17:2908676 chr17:2908678 nonsynonymous SNV 0.911 5 23 hm5C_associated_SNPs_90040 0 0 0 0 2 RAP1GAP2 chr17:2908663 3'AG 2908663 Downstream 16bp
chr17 2908678 2908678 1 + C T KIRC 2908676 + 2908656 2908696 41 CACTCAGGTCTCTGTCACTGCGCGGGAAGATGTGCCCACCT CACTCAGGTCTCTGTCACTGCGTGGGAAGATGTGCCCACCT < 41bp 0.709780493458009 0.4356243859308 0.35521978 0.44886395 prediction 0.419560986916018 Functional Loss - RAP1GAP2 ENSG00000132359 CDS Human protein_coding chr17:2908676 chr17:2908678 nonsynonymous SNV 0.911 5 23 hm5C_associated_SNPs_90040 0 0 0 0 2 RAP1GAP2 chr17:2908734 5'GT 2908734 Upstream 57bp
chr11 129312796 129312796 1 + G A UCEC 129312793 + 129312773 129312813 41 AAGACCTGGTATCAGAATCGCAGGATGAAATGGAAGAAAAT AAGACCTGGTATCAGAATCGCAGAATGAAATGGAAGAAAAT < 41bp 0.709779078478284 0.477355974535412 0.8504627 0.28017265 prediction 0.419558156956568 Functional Loss - BARX2 ENSG00000043039 CDS Human protein_coding chr11:129312793 chr11:129312796 synonymous SNV . 0 24 hm5C_associated_SNPs_90043 0 0 0 0 2 BARX2 chr11:129312730 3'AG 129312730 Downstream 67bp
chr11 129312796 129312796 1 + G A UCEC 129312793 + 129312773 129312813 41 AAGACCTGGTATCAGAATCGCAGGATGAAATGGAAGAAAAT AAGACCTGGTATCAGAATCGCAGAATGAAATGGAAGAAAAT < 41bp 0.709779078478284 0.477355974535412 0.8504627 0.28017265 prediction 0.419558156956568 Functional Loss - BARX2 ENSG00000043039 CDS Human protein_coding chr11:129312793 chr11:129312796 synonymous SNV . 0 24 hm5C_associated_SNPs_90043 0 0 0 0 2 BARX2 chr11:129312814 5'GT 129312814 Upstream 19bp
chr19 810762 810762 1 + T C LIHC 810761 + 810741 810781 41 CGGTCCAGGCCCTCATTGACCTGCACAACCACGACCTCGGG CGGTCCAGGCCCTCATTGACCCGCACAACCACGACCTCGGG < 41bp 0.829504735870103 0.619726950121998 0.1884318 0.27098542 prediction 0.41955557149621 Functional Loss - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:810761 chr19:810762 nonsynonymous SNV 0.951 3 22 hm5C_associated_SNPs_90044 0 0 1 0 1 PTBP1 chr19:810694 3'AG 810694 Downstream 69bp
chr20 25190505 25190505 1 + G A rs144718324 25190502 + 25190482 25190522 41 TAGAAACTCCCACGTTAACCCACGAAACCTTCAAAGCACTG TAGAAACTCCCACGTTAACCCACAAAACCTTCAAAGCACTG < 41bp 0.750973833824178 0.541197460838815 0.20066106 0.14197224 prediction 0.419552745970726 Functional Loss - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25190502 chr20:25190505 nonsynonymous SNV 0.938 4 24 hm5C_associated_SNPs_90046 0 0 1 0 2 ENTPD6 chr20:25190485 3'AG 25190485 Downstream 21bp
chr20 25190505 25190505 1 + G A rs144718324 25190502 + 25190482 25190522 41 TAGAAACTCCCACGTTAACCCACGAAACCTTCAAAGCACTG TAGAAACTCCCACGTTAACCCACAAAACCTTCAAAGCACTG < 41bp 0.750973833824178 0.541197460838815 0.20066106 0.14197224 prediction 0.419552745970726 Functional Loss - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25190502 chr20:25190505 nonsynonymous SNV 0.938 4 24 hm5C_associated_SNPs_90046 0 0 1 0 2 ENTPD6 chr20:25190561 5'GT 25190561 Upstream 57bp
chr5 148745664 148745664 1 + T C rs145533821 148745663 + 148745643 148745683 41 CTTTATTGATGATGTCGTTTCTGCTGTCCTGCGGGCCAGCT CTTTATTGATGATGTCGTTTCCGCTGTCCTGCGGGCCAGCT < 41bp 0.709775728215597 0.448423373973354 0.14186496 0.36335045 prediction 0.419551456431195 Functional Loss - PCYOX1L ENSG00000145882 CDS Human protein_coding chr5:148745663 chr5:148745664 synonymous SNV . 0 22 hm5C_associated_SNPs_90047 0 0 0 0 1 PCYOX1L chr5:148745716 5'GT 148745716 Upstream 53bp
chr16 75138757 75138757 1 + G T UCEC 75138755 + 75138735 75138775 41 CTGCAGGGGGACACGATAGCCAGGCTGCCCTGCCTGTGCAT CTGCAGGGGGACACGATAGCCATGCTGCCCTGCCTGTGCAT < 41bp 0.709772852006532 0.348048813649179 0.9015838 0.22704118 prediction 0.419545704013065 Functional Loss - ZNRF1 ENSG00000186187 CDS Human protein_coding chr16:75138755 chr16:75138757 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_90050 0 0 1 0 2 ZNRF1 chr16:75138682 3'AG 75138682 Downstream 76bp
chr16 75138757 75138757 1 + G T UCEC 75138755 + 75138735 75138775 41 CTGCAGGGGGACACGATAGCCAGGCTGCCCTGCCTGTGCAT CTGCAGGGGGACACGATAGCCATGCTGCCCTGCCTGTGCAT < 41bp 0.709772852006532 0.348048813649179 0.9015838 0.22704118 prediction 0.419545704013065 Functional Loss - ZNRF1 ENSG00000186187 CDS Human protein_coding chr16:75138755 chr16:75138757 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_90050 0 0 1 0 2 ZNRF1 chr16:75138787 5'GT 75138787 Upstream 31bp
chr17 66519036 66519036 1 + C T COAD 66519034 + 66519014 66519054 41 GCTATCAGCGCTGAGGTCTACACGGAGGAAGATGCGGCATC GCTATCAGCGCTGAGGTCTACATGGAGGAAGATGCGGCATC < 41bp 0.858826329928954 0.649058547314557 0.7826126 0.36119127 prediction 0.419535565228794 Functional Loss - PRKAR1A ENSG00000108946 CDS Human protein_coding chr17:66519034 chr17:66519036 nonsynonymous SNV 0.852 3 23 hm5C_associated_SNPs_90055 0 0 1 0 1 PRKAR1A chr17:66519067 5'GT 66519067 Upstream 32bp
chr10 45430175 45430175 1 + G A rs140679942 45430172 + 45430152 45430192 41 GGAAGAAGAGGAAAGCTGCCCCCGAGGTGCTGGCCTCCCCA GGAAGAAGAGGAAAGCTGCCCCCAAGGTGCTGGCCTCCCCA < 41bp 0.821634835283548 0.611870619532036 0.21825317 0.17648971 prediction 0.419528431503025 Functional Loss - TMEM72 ENSG00000187783 CDS Human protein_coding chr10:45430172 chr10:45430175 nonsynonymous SNV 0.048 0 24 hm5C_associated_SNPs_90056 0 0 0 0 1 TMEM72 chr10:45430104 3'AG 45430104 Downstream 72bp
chr13 114290396 114290396 1 + C T rs202144389 114290393 + 114290373 114290413 41 ATCCACCTGCCCTTCATCATCGTCAACACCAGCAAGAAGAC ATCCACCTGCCCTTCATCATCGTTAACACCAGCAAGAAGAC < 41bp 0.709762167503972 0.486785671136243 0.15217614 0.16315725 prediction 0.419524335007945 Functional Loss - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114290393 chr13:114290396 synonymous SNV . 0 24 hm5C_associated_SNPs_90063 0 0 1 0 1 TFDP1 chr13:114290443 5'GT 114290443 Upstream 48bp
chr1 32502584 32502584 1 + G A CESC 32502581 + 32502561 32502601 41 GAATGGAGTACCTGAACCCTCTCGTGGACGTGGGGTGCCAG GAATGGAGTACCTGAACCCTCTCATGGACGTGGGGTGCCAG < 41bp 0.806922886448013 0.597162122484964 0.22749889 0.094691545 prediction 0.419521527926097 Functional Loss - KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502581 chr1:32502584 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_90064 0 0 1 0 2 KHDRBS1 chr1:32502511 3'AG 32502511 Downstream 74bp
chr1 32502584 32502584 1 + G A CESC 32502581 + 32502561 32502601 41 GAATGGAGTACCTGAACCCTCTCGTGGACGTGGGGTGCCAG GAATGGAGTACCTGAACCCTCTCATGGACGTGGGGTGCCAG < 41bp 0.806922886448013 0.597162122484964 0.22749889 0.094691545 prediction 0.419521527926097 Functional Loss - KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502581 chr1:32502584 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_90064 0 0 1 0 2 KHDRBS1 chr1:32502644 5'GT 32502644 Upstream 61bp
chr8 79510711 79510711 1 + C T UCEC 79510708 + 79510688 79510728 41 ACATGATATCCTGGTTTCCTCTGCAAGTGGCAACAGCAATG ACATGATATCCTGGTTTCCTCTGTAAGTGGCAACAGCAATG < 41bp 0.782672172509675 0.572912865845897 0.2243075 0.12333006 prediction 0.419518613327555 Functional Loss - PKIA ENSG00000171033 CDS Human protein_coding chr8:79510708 chr8:79510711 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_90065 0 0 0 0 1 PKIA chr8:79510770 5'GT 79510770 Upstream 60bp
chr7 150269284 150269284 1 + A T OV 150269280 + 150269260 150269300 41 GTTAGTGGGTAAAACCGGAGCAGGAAAAAGTGCAACAGGAA GTTAGTGGGTAAAACCGGAGCAGGTAAAAGTGCAACAGGAA < 41bp 0.88888567315496 0.67912809542557 0.8818665 0.8982086 prediction 0.419515155458779 Functional Loss - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150269280 chr7:150269284 synonymous SNV . 0 25 hm5C_associated_SNPs_90067 0 0 0 0 2 GIMAP4 chr7:150269217 3'AG 150269217 Downstream 68bp
chr7 150269284 150269284 1 + A T OV 150269280 + 150269260 150269300 41 GTTAGTGGGTAAAACCGGAGCAGGAAAAAGTGCAACAGGAA GTTAGTGGGTAAAACCGGAGCAGGTAAAAGTGCAACAGGAA < 41bp 0.88888567315496 0.67912809542557 0.8818665 0.8982086 prediction 0.419515155458779 Functional Loss - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150269280 chr7:150269284 synonymous SNV . 0 25 hm5C_associated_SNPs_90067 0 0 0 0 2 GIMAP4 chr7:150269361 5'GT 150269361 Upstream 78bp
chr1 227149223 227149223 1 + C T rs187123516 227149221 + 227149201 227149241 41 GCGGCCAGGGCCCTGCAGTCCACGGCTGTGGAGCAGATTGG GCGGCCAGGGCCCTGCAGTCCATGGCTGTGGAGCAGATTGG < 41bp 0.709753292716937 0.443627029805039 0.14207733 0.107189864 prediction 0.419506585433874 Functional Loss - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227149221 chr1:227149223 nonsynonymous SNV 0.627 2 23 hm5C_associated_SNPs_90068 0 0 1 0 3 COQ8A chr1:227149127 3'AG 227149127 Downstream 97bp
chr1 227149223 227149223 1 + C T rs187123516 227149221 + 227149201 227149241 41 GCGGCCAGGGCCCTGCAGTCCACGGCTGTGGAGCAGATTGG GCGGCCAGGGCCCTGCAGTCCATGGCTGTGGAGCAGATTGG < 41bp 0.709753292716937 0.443627029805039 0.14207733 0.107189864 prediction 0.419506585433874 Functional Loss - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227149221 chr1:227149223 nonsynonymous SNV 0.627 2 23 hm5C_associated_SNPs_90068 0 0 1 0 3 COQ8A chr1:227149209 3'AG 227149209 Downstream 15bp
chr1 227149223 227149223 1 + C T rs187123516 227149221 + 227149201 227149241 41 GCGGCCAGGGCCCTGCAGTCCACGGCTGTGGAGCAGATTGG GCGGCCAGGGCCCTGCAGTCCATGGCTGTGGAGCAGATTGG < 41bp 0.709753292716937 0.443627029805039 0.14207733 0.107189864 prediction 0.419506585433874 Functional Loss - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227149221 chr1:227149223 nonsynonymous SNV 0.627 2 23 hm5C_associated_SNPs_90068 0 0 1 0 3 COQ8A chr1:227149263 5'GT 227149263 Upstream 41bp
chr11 111848509 111848509 1 + C T BLCA 111848507 + 111848487 111848527 41 GAGGGGGACCATGGGAGGGACGCAAGTCAAATGGTGAGCTG GAGGGGGACCATGGGAGGGACGTAAGTCAAATGGTGAGCTG < 41bp 0.709751353723534 0.456632927268664 0.8661375 0.8646221 prediction 0.419502707447067 Functional Loss - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111848507 chr11:111848509 stopgain 0.993 0 23 hm5C_associated_SNPs_90069 0 0 0 0 1 DIXDC1 chr11:111848519 5'GT 111848519 Upstream 11bp
chr10 38666967 38666967 1 + G A SKCM 38666964 + 38666944 38666984 41 TTTATCAAAAGTTACTGGAACTGGAAAAGCACATTAGGGTC TTTATCAAAAGTTACTGGAACTGAAAAAGCACATTAGGGTC < 41bp 0.759752828728155 0.550003329651341 0.32052612 0.18904221 prediction 0.419498998153629 Functional Loss - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38666964 chr10:38666967 . . 0 24 hm5C_associated_SNPs_90073 0 0 0 4 1 HSD17B7P2 chr10:38666913 3'AG 38666913 Downstream 55bp
chr21 45479008 45479008 1 + A T HNSC 45479004 + 45478984 45479024 41 GAGGAGCTTGCCTTTGTTTTCGAGATGCTGCAGCAGTTCGA GAGGAGCTTGCCTTTGTTTTCGAGTTGCTGCAGCAGTTCGA < 41bp 0.819789624120483 0.610040927304431 0.8916141 0.61510676 prediction 0.419497393632105 Functional Loss - TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45479004 chr21:45479008 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_90074 0 0 1 0 2 TRAPPC10 chr21:45478984 3'AG 45478984 Downstream 25bp
chr21 45479008 45479008 1 + A T HNSC 45479004 + 45478984 45479024 41 GAGGAGCTTGCCTTTGTTTTCGAGATGCTGCAGCAGTTCGA GAGGAGCTTGCCTTTGTTTTCGAGTTGCTGCAGCAGTTCGA < 41bp 0.819789624120483 0.610040927304431 0.8916141 0.61510676 prediction 0.419497393632105 Functional Loss - TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45479004 chr21:45479008 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_90074 0 0 1 0 2 TRAPPC10 chr21:45479095 5'GT 45479095 Upstream 88bp
chr22 39907427 39907427 1 + C T CESC 39907425 + 39907405 39907445 41 GCGGCCATGCTGGGCATCGCCACGCTGGCAGTTAAGCGGGT GCGGCCATGCTGGGCATCGCCATGCTGGCAGTTAAGCGGGT < 41bp 0.709746082163148 0.43658535199404 0.8616209 0.87444913 prediction 0.419492164326296 Functional Loss - MIEF1 ENSG00000100335 CDS Human protein_coding chr22:39907425 chr22:39907427 nonsynonymous SNV 0.987 4 23 hm5C_associated_SNPs_90076 0 0 1 0 1 MIEF1 chr22:39907443 5'GT 39907443 Upstream 17bp
chr5 98109838 98109838 1 + A C rs2662263 98109837 + 98109817 98109857 41 GCCGAGGTTGAGCAGCGCCGCAGCCCCGGGCTCTGCCCCCC GCCGAGGTTGAGCAGCGCCGCCGCCCCGGGCTCTGCCCCCC < 41bp 0.709742062089933 0.456573395967835 0.18254647 0.30175537 prediction 0.419484124179866 Functional Loss - RGMB ENSG00000174136 CDS Human protein_coding chr5:98109837 chr5:98109838 nonsynonymous SNV 0.621 1 22 hm5C_associated_SNPs_90079 0 0 1 0 1 RGMB chr5:98109910 5'GT 98109910 Upstream 73bp
chr7 99661434 99661434 1 + G A BLCA 99661431 + 99661411 99661451 41 ATTGCAGATTGAGTACCCAGCACGAGGAATCAGCAGATGAG ATTGCAGATTGAGTACCCAGCACAAGGAATCAGCAGATGAG < 41bp 0.800343053844057 0.590601867359229 0.13511452 0.112863034 prediction 0.419482372969657 Functional Loss - ZSCAN21 ENSG00000166529 CDS Human protein_coding chr7:99661431 chr7:99661434 nonsynonymous SNV 0.042 1 24 hm5C_associated_SNPs_90080 0 0 1 0 1 ZSCAN21 chr7:99661411 3'AG 99661411 Downstream 24bp
chr22 46134638 46134638 1 + G A COAD 46134635 + 46134615 46134655 41 CACTGGCTACAATTAGGCTTCTCGACGTCCTGTGCGAAATG CACTGGCTACAATTAGGCTTCTCAACGTCCTGTGCGAAATG < 41bp 0.709740529450695 0.46446827997911 0.20580018 0.5561438 prediction 0.419481058901391 Functional Loss - ATXN10 ENSG00000130638 CDS Human protein_coding chr22:46134635 chr22:46134638 nonsynonymous SNV 0.705 1 24 hm5C_associated_SNPs_90081 0 0 1 0 2 ATXN10 chr22:46134611 3'AG 46134611 Downstream 28bp
chr22 46134638 46134638 1 + G A COAD 46134635 + 46134615 46134655 41 CACTGGCTACAATTAGGCTTCTCGACGTCCTGTGCGAAATG CACTGGCTACAATTAGGCTTCTCAACGTCCTGTGCGAAATG < 41bp 0.709740529450695 0.46446827997911 0.20580018 0.5561438 prediction 0.419481058901391 Functional Loss - ATXN10 ENSG00000130638 CDS Human protein_coding chr22:46134635 chr22:46134638 nonsynonymous SNV 0.705 1 24 hm5C_associated_SNPs_90081 0 0 1 0 2 ATXN10 chr22:46134719 5'GT 46134719 Upstream 82bp
chr11 249015 249015 1 + C T UCEC 249012 + 248992 249032 41 CTCTATGCCTTCAACAGTGGCAACGTAGAGCGGTTCCAGAC CTCTATGCCTTCAACAGTGGCAATGTAGAGCGGTTCCAGAC < 41bp 0.709738723154591 0.489672584337373 0.059676766 0.11467168 prediction 0.419477446309182 Functional Loss - PSMD13 ENSG00000185627 CDS Human protein_coding chr11:249012 chr11:249015 synonymous SNV . 0 24 hm5C_associated_SNPs_90082 0 0 1 0 2 PSMD13 chr11:248932 3'AG 248932 Downstream 84bp
chr11 249015 249015 1 + C T UCEC 249012 + 248992 249032 41 CTCTATGCCTTCAACAGTGGCAACGTAGAGCGGTTCCAGAC CTCTATGCCTTCAACAGTGGCAATGTAGAGCGGTTCCAGAC < 41bp 0.709738723154591 0.489672584337373 0.059676766 0.11467168 prediction 0.419477446309182 Functional Loss - PSMD13 ENSG00000185627 CDS Human protein_coding chr11:249012 chr11:249015 synonymous SNV . 0 24 hm5C_associated_SNPs_90082 0 0 1 0 2 PSMD13 chr11:249057 5'GT 249057 Upstream 43bp
chr1 113232670 113232670 1 + C T SKCM 113232667 + 113232647 113232687 41 CCCTTCAAGCGGACCCGGATCACCGGAAACCCTGTGGTGAC CCCTTCAAGCGGACCCGGATCACTGGAAACCCTGTGGTGAC < 41bp 0.762473679207374 0.552738952413171 0.22343057 0.12949905 prediction 0.419469453588407 Functional Loss - MOV10 ENSG00000155363 CDS Human protein_coding chr1:113232667 chr1:113232670 synonymous SNV . 0 24 hm5C_associated_SNPs_90083 0 0 0 0 1 MOV10 chr1:113232720 5'GT 113232720 Upstream 51bp
chr12 120750766 120750766 1 + G A UCEC 120750763 + 120750743 120750783 41 AATACTGAACATTGGGCCCACACGGTCGGATGACTTGGCGT AATACTGAACATTGGGCCCACACAGTCGGATGACTTGGCGT < 41bp 0.796293427283557 0.586558813073084 0.43864006 0.098748624 prediction 0.419469228420947 Functional Loss - SIRT4 ENSG00000089163 CDS Human protein_coding chr12:120750763 chr12:120750766 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_90084 0 0 1 0 1 SIRT4 chr12:120750687 3'AG 120750687 Downstream 80bp
chr11 8933064 8933064 1 + G A rs1133833 8933061 + 8933041 8933081 41 ACGTTCCCTGCAGCGTTCAGCAAGGCTGGCTCTAGAAGTGC ACGTTCCCTGCAGCGTTCAGCAAAGCTGGCTCTAGAAGTGC < 41bp 0.802622818375256 0.592890264093244 0.8715228 0.56961066 prediction 0.419465108564023 Functional Loss - AKIP1 ENSG00000166452 CDS Human protein_coding chr11:8933061 chr11:8933064 nonsynonymous SNV 0.470 2 24 hm5C_associated_SNPs_90085 0 0 1 0 1 AKIP1 chr11:8932991 3'AG 8932991 Downstream 74bp
chr15 27128618 27128618 1 + C T LUAD 27128615 + 27128595 27128635 41 ACCCCAGACACGTTCTTCCACAACGGGAAGAAGTCCATCGC ACCCCAGACACGTTCTTCCACAATGGGAAGAAGTCCATCGC < 41bp 0.709732523835596 0.489288652207583 0.2255761 0.20271298 prediction 0.419465047671193 Functional Loss - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27128615 chr15:27128618 synonymous SNV . 0 24 hm5C_associated_SNPs_90086 0 0 0 0 1 GABRA5 chr15:27128704 5'GT 27128704 Upstream 87bp
chr8 70515487 70515487 1 + C T SKCM 70515485 + 70515465 70515505 41 CGATCCTGGATATTGCTGGGCTCGACACACCTCCTGATGTG CGATCCTGGATATTGCTGGGCTTGACACACCTCCTGATGTG < 41bp 0.709727871836066 0.408461354190731 0.11494455 0.11519694 prediction 0.419455743672132 Functional Loss - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70515485 chr8:70515487 synonymous SNV . 0 23 hm5C_associated_SNPs_90091 0 0 0 0 1 SULF1 chr8:70515555 5'GT 70515555 Upstream 69bp
chr1 150237006 150237006 1 + G A HNSC 150237003 + 150236983 150237023 41 CCCTTTCCAGGAAGAAGAGGCTGGAAAACCGAAAGAGTGTG CCCTTTCCAGGAAGAAGAGGCTGAAAAACCGAAAGAGTGTG < 41bp 0.776505429461683 0.566780229078919 0.30562383 0.1568338 prediction 0.419450400765527 Functional Loss - CA14 ENSG00000118298 CDS Human protein_coding chr1:150237003 chr1:150237006 stopgain 0.981 0 24 hm5C_associated_SNPs_90093 0 0 0 0 1 CA14 chr1:150236993 3'AG 150236993 Downstream 14bp
chr20 31814763 31814763 1 + G A rs114904196 31814760 + 31814740 31814780 41 GTCCTCTGATCGGTGAAATCCTCGGGCAGCTGGATGTGAAA GTCCTCTGATCGGTGAAATCCTCAGGCAGCTGGATGTGAAA < 41bp 0.80165211115953 0.591927059241721 0.6919099 0.20366433 prediction 0.419450103835617 Functional Loss - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31814760 chr20:31814763 nonsynonymous SNV 0.227 0 24 hm5C_associated_SNPs_90094 0 0 0 0 2 BPIFA3 chr20:31814736 3'AG 31814736 Downstream 28bp
chr20 31814763 31814763 1 + G A rs114904196 31814760 + 31814740 31814780 41 GTCCTCTGATCGGTGAAATCCTCGGGCAGCTGGATGTGAAA GTCCTCTGATCGGTGAAATCCTCAGGCAGCTGGATGTGAAA < 41bp 0.80165211115953 0.591927059241721 0.6919099 0.20366433 prediction 0.419450103835617 Functional Loss - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31814760 chr20:31814763 nonsynonymous SNV 0.227 0 24 hm5C_associated_SNPs_90094 0 0 0 0 2 BPIFA3 chr20:31814799 5'GT 31814799 Upstream 37bp
chrX 41203552 41203552 1 + C T DLBC 41203549 + 41203529 41203569 41 ATGGTGGTGCCGATATTGGTCAGCAGATTCGAGACTTGGAA ATGGTGGTGCCGATATTGGTCAGTAGATTCGAGACTTGGAA < 41bp 0.741393412141969 0.531672752169675 0.43499005 0.35792437 prediction 0.419441319944586 Functional Loss - DDX3X ENSG00000215301 CDS Human protein_coding chrX:41203549 chrX:41203552 stopgain 1.000 1 24 hm5C_associated_SNPs_90096 0 0 1 0 1 DDX3X chrX:41203492 3'AG 41203492 Downstream 61bp
chr16 31273080 31273080 1 + G T LUAD 31273076 + 31273056 31273096 41 AATGACCTTCCAAGAGAACGCAAGGGGCTTCGGGCAGAGCG AATGACCTTCCAAGAGAACGCAAGTGGCTTCGGGCAGAGCG < 41bp 0.736028142566189 0.526308865799601 0.85586977 0.35883024 prediction 0.419438553533177 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31273076 chr16:31273080 nonsynonymous SNV 0.134 0 25 hm5C_associated_SNPs_90097 0 0 0 0 2 ITGAM chr16:31273013 3'AG 31273013 Downstream 68bp
chr16 31273080 31273080 1 + G T LUAD 31273076 + 31273056 31273096 41 AATGACCTTCCAAGAGAACGCAAGGGGCTTCGGGCAGAGCG AATGACCTTCCAAGAGAACGCAAGTGGCTTCGGGCAGAGCG < 41bp 0.736028142566189 0.526308865799601 0.85586977 0.35883024 prediction 0.419438553533177 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31273076 chr16:31273080 nonsynonymous SNV 0.134 0 25 hm5C_associated_SNPs_90097 0 0 0 0 2 ITGAM chr16:31273118 5'GT 31273118 Upstream 39bp
chrX 69424318 69424318 1 + C T SKCM 69424316 + 69424296 69424336 41 CTTCCATGGCCGGGGCTTCACTCGCGGATCCTGGGGCTTCC CTTCCATGGCCGGGGCTTCACTTGCGGATCCTGGGGCTTCC < 41bp 0.868279776833399 0.658564193769353 0.58495945 0.35405642 prediction 0.419431166128092 Functional Loss - DGAT2L6 ENSG00000184210 CDS Human protein_coding chrX:69424316 chrX:69424318 nonsynonymous SNV 0.152 2 23 hm5C_associated_SNPs_90099 0 0 0 0 1 DGAT2L6 chrX:69424366 5'GT 69424366 Upstream 49bp
chr1 115576115 115576115 1 + C T COAD 115576112 + 115576092 115576132 41 GCTTATTGCCTAACCATCAACACCACCATCTGTGCTGGATA GCTTATTGCCTAACCATCAACACTACCATCTGTGCTGGATA < 41bp 0.744722841260137 0.535007408597997 0.021089554 0.059599757 prediction 0.41943086532428 Functional Loss - TSHB ENSG00000134200 CDS Human protein_coding chr1:115576112 chr1:115576115 synonymous SNV . 0 24 hm5C_associated_SNPs_90100 0 0 0 0 1 TSHB chr1:115576145 5'GT 115576145 Upstream 31bp
chr10 22678113 22678113 1 + G T UCEC 22678111 + 22678091 22678131 41 TTCACAGCTGGTAGTTAACGCAGGAGGGGTTGCTGCCGTGA TTCACAGCTGGTAGTTAACGCATGAGGGGTTGCTGCCGTGA < 41bp 0.914540049717681 0.704825249892935 0.9089931 0.5073425 prediction 0.419429599649491 Functional Loss - SPAG6 ENSG00000077327 CDS Human protein_coding chr10:22678111 chr10:22678113 stopgain 0.971 1 23 hm5C_associated_SNPs_90101 0 0 0 0 1 SPAG6 chr10:22678089 3'AG 22678089 Downstream 25bp
chr10 50828601 50828601 1 + T C LIHC 50828600 + 50828580 50828620 41 CGCCTGGCCCTGCCTGTCAACTCCAGCCCTGCCGTGATCTT CGCCTGGCCCTGCCTGTCAACCCCAGCCCTGCCGTGATCTT < 41bp 0.709713885281196 0.426886019054395 0.9239899 0.12970161 prediction 0.419427770562393 Functional Loss - CHAT ENSG00000070748 CDS Human protein_coding chr10:50828600 chr10:50828601 nonsynonymous SNV 0.963 5 22 hm5C_associated_SNPs_90102 0 0 0 0 2 CHAT chr10:50828541 3'AG 50828541 Downstream 61bp
chr10 50828601 50828601 1 + T C LIHC 50828600 + 50828580 50828620 41 CGCCTGGCCCTGCCTGTCAACTCCAGCCCTGCCGTGATCTT CGCCTGGCCCTGCCTGTCAACCCCAGCCCTGCCGTGATCTT < 41bp 0.709713885281196 0.426886019054395 0.9239899 0.12970161 prediction 0.419427770562393 Functional Loss - CHAT ENSG00000070748 CDS Human protein_coding chr10:50828600 chr10:50828601 nonsynonymous SNV 0.963 5 22 hm5C_associated_SNPs_90102 0 0 0 0 2 CHAT chr10:50828659 5'GT 50828659 Upstream 59bp
chr10 50828603 50828603 1 + C T SKCM 50828600 + 50828580 50828620 41 CGCCTGGCCCTGCCTGTCAACTCCAGCCCTGCCGTGATCTT CGCCTGGCCCTGCCTGTCAACTCTAGCCCTGCCGTGATCTT < 41bp 0.709713885281196 0.478863690265394 0.9239899 0.86589223 prediction 0.419427770562393 Functional Loss - CHAT ENSG00000070748 CDS Human protein_coding chr10:50828600 chr10:50828603 synonymous SNV . 0 24 hm5C_associated_SNPs_90103 0 0 0 0 2 CHAT chr10:50828541 3'AG 50828541 Downstream 63bp
chr10 50828603 50828603 1 + C T SKCM 50828600 + 50828580 50828620 41 CGCCTGGCCCTGCCTGTCAACTCCAGCCCTGCCGTGATCTT CGCCTGGCCCTGCCTGTCAACTCTAGCCCTGCCGTGATCTT < 41bp 0.709713885281196 0.478863690265394 0.9239899 0.86589223 prediction 0.419427770562393 Functional Loss - CHAT ENSG00000070748 CDS Human protein_coding chr10:50828600 chr10:50828603 synonymous SNV . 0 24 hm5C_associated_SNPs_90103 0 0 0 0 2 CHAT chr10:50828659 5'GT 50828659 Upstream 57bp
chr1 15430639 15430639 1 + C T COAD 15430636 + 15430616 15430656 41 TCCCCAGTGGGAAGCACATCCTCCGGAGACACCTGGCAGAG TCCCCAGTGGGAAGCACATCCTCTGGAGACACCTGGCAGAG < 41bp 0.737734000729029 0.528020773197195 0.24271452 0.22160903 prediction 0.419426455063668 Functional Loss - KAZN ENSG00000189337 CDS Human protein_coding chr1:15430636 chr1:15430639 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_90104 0 0 0 0 1 KAZN chr1:15430685 5'GT 15430685 Upstream 47bp
chr19 57050546 57050546 1 + C T HNSC 57050544 + 57050524 57050564 41 GGCCGCGCTCAAGGAATGGCCTCGCATCCAAAGGCCAGCGA GGCCGCGCTCAAGGAATGGCCTTGCATCCAAAGGCCAGCGA < 41bp 0.709711391698279 0.461915984493553 0.4250946 0.3152994 prediction 0.419422783396558 Functional Loss - ZFP28 ENSG00000196867 CDS Human protein_coding chr19:57050544 chr19:57050546 synonymous SNV . 0 23 hm5C_associated_SNPs_90106 0 0 0 0 1 ZFP28 chr19:57050595 5'GT 57050595 Upstream 50bp
chr16 49412485 49412485 1 + G A SKCM 49412482 + 49412462 49412502 41 ATGGTCCCTGGCAGCTACATCAAGGATGGCCCCAAGAAATC ATGGTCCCTGGCAGCTACATCAAAGATGGCCCCAAGAAATC < 41bp 0.830639564437726 0.620930421788196 0.757676 0.16158104 prediction 0.419418285299059 Functional Loss - C16orf78 ENSG00000166152 CDS Human protein_coding chr16:49412482 chr16:49412485 synonymous SNV . 0 24 hm5C_associated_SNPs_90108 0 0 0 0 1 C16orf78 chr16:49412504 5'GT 49412504 Upstream 20bp
chr14 24641958 24641958 1 + C T BLCA 24641956 + 24641936 24641976 41 GCGGCAGCCGGTTGGTGAAGCGCGAATACCTGAGGGTGAAT GCGGCAGCCGGTTGGTGAAGCGTGAATACCTGAGGGTGAAT < 41bp 0.852103610525347 0.642398214464269 0.49572912 0.37826738 prediction 0.419410792122155 Functional Loss - REC8 ENSG00000100918 CDS Human protein_coding chr14:24641956 chr14:24641958 synonymous SNV . 0 23 hm5C_associated_SNPs_90113 0 0 1 0 2 REC8 chr14:24641922 3'AG 24641922 Downstream 37bp
chr14 24641958 24641958 1 + C T BLCA 24641956 + 24641936 24641976 41 GCGGCAGCCGGTTGGTGAAGCGCGAATACCTGAGGGTGAAT GCGGCAGCCGGTTGGTGAAGCGTGAATACCTGAGGGTGAAT < 41bp 0.852103610525347 0.642398214464269 0.49572912 0.37826738 prediction 0.419410792122155 Functional Loss - REC8 ENSG00000100918 CDS Human protein_coding chr14:24641956 chr14:24641958 synonymous SNV . 0 23 hm5C_associated_SNPs_90113 0 0 1 0 2 REC8 chr14:24641990 5'GT 24641990 Upstream 33bp
chr1 89885813 89885813 1 + A C COAD 89885809 + 89885789 89885829 41 GAATCTGGATGTGGTGTATGCCCCATCCCAAGAAGCCAGGC GAATCTGGATGTGGTGTATGCCCCCTCCCAAGAAGCCAGGC < 41bp 0.70970528073369 0.332517326297744 0.11236042 0.07740724 prediction 0.41941056146738 Functional Loss - GBP1P1 ENSG00000225492 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:89885809 chr1:89885813 . . 0 25 hm5C_associated_SNPs_90114 0 0 0 0 2 GBP1P1 chr1:89885750 3'AG 89885750 Downstream 64bp
chr1 89885813 89885813 1 + A C COAD 89885809 + 89885789 89885829 41 GAATCTGGATGTGGTGTATGCCCCATCCCAAGAAGCCAGGC GAATCTGGATGTGGTGTATGCCCCCTCCCAAGAAGCCAGGC < 41bp 0.70970528073369 0.332517326297744 0.11236042 0.07740724 prediction 0.41941056146738 Functional Loss - GBP1P1 ENSG00000225492 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:89885809 chr1:89885813 . . 0 25 hm5C_associated_SNPs_90114 0 0 0 0 2 GBP1P1 chr1:89885877 5'GT 89885877 Upstream 65bp
chr2 71170816 71170816 1 + G T COAD 71170813 + 71170793 71170833 41 AGGACTGTGTGCAGCGTGAACGGGCCCCTGGTGGTGCTGGA AGGACTGTGTGCAGCGTGAACGGTCCCCTGGTGGTGCTGGA < 41bp 0.709704716906278 0.386657950799668 0.5680577 0.20592016 prediction 0.419409433812555 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71170813 chr2:71170816 synonymous SNV . 0 24 hm5C_associated_SNPs_90115 0 0 1 0 2 ATP6V1B1 chr2:71170788 3'AG 71170788 Downstream 29bp
chr2 71170816 71170816 1 + G T COAD 71170813 + 71170793 71170833 41 AGGACTGTGTGCAGCGTGAACGGGCCCCTGGTGGTGCTGGA AGGACTGTGTGCAGCGTGAACGGTCCCCTGGTGGTGCTGGA < 41bp 0.709704716906278 0.386657950799668 0.5680577 0.20592016 prediction 0.419409433812555 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71170813 chr2:71170816 synonymous SNV . 0 24 hm5C_associated_SNPs_90115 0 0 1 0 2 ATP6V1B1 chr2:71170843 5'GT 71170843 Upstream 28bp
chr20 61296364 61296364 1 + C T rs145175877 61296361 + 61296341 61296381 41 GCCACCGAGGCCACTCTCATCACCGGCATGTCCACGTTCAG GCCACCGAGGCCACTCTCATCACTGGCATGTCCACGTTCAG < 41bp 0.70970398660939 0.499097165864732 0.10170588 0.25640905 prediction 0.41940797321878 Functional Loss - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61296361 chr20:61296364 synonymous SNV . 0 24 hm5C_associated_SNPs_90116 0 0 1 0 2 SLCO4A1 chr20:61296286 3'AG 61296286 Downstream 79bp
chr20 61296364 61296364 1 + C T rs145175877 61296361 + 61296341 61296381 41 GCCACCGAGGCCACTCTCATCACCGGCATGTCCACGTTCAG GCCACCGAGGCCACTCTCATCACTGGCATGTCCACGTTCAG < 41bp 0.70970398660939 0.499097165864732 0.10170588 0.25640905 prediction 0.41940797321878 Functional Loss - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61296361 chr20:61296364 synonymous SNV . 0 24 hm5C_associated_SNPs_90116 0 0 1 0 2 SLCO4A1 chr20:61296440 5'GT 61296440 Upstream 77bp
chr16 67899124 67899124 1 + G C LUAD 67899123 + 67899103 67899143 41 AATGATAGAACCCAACTAGGCGCAATTTACGTAAGTTTCCA AATGATAGAACCCAACTAGGCCCAATTTACGTAAGTTTCCA < 41bp 0.709701655535573 0.401750156781267 0.047620654 0.059101433 prediction 0.419403311071145 Functional Loss - NUTF2 ENSG00000102898 CDS Human protein_coding chr16:67899123 chr16:67899124 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_90118 0 0 1 0 1 NUTF2 chr16:67899132 5'GT 67899132 Upstream 9bp
chr16 67899125 67899125 1 + C T STAD 67899123 + 67899103 67899143 41 AATGATAGAACCCAACTAGGCGCAATTTACGTAAGTTTCCA AATGATAGAACCCAACTAGGCGTAATTTACGTAAGTTTCCA < 41bp 0.709701655535573 0.430534798062595 0.047620654 0.13454452 prediction 0.419403311071145 Functional Loss - NUTF2 ENSG00000102898 CDS Human protein_coding chr16:67899123 chr16:67899125 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_90119 0 0 1 0 1 NUTF2 chr16:67899132 5'GT 67899132 Upstream 8bp
chr1 34666411 34666411 1 + G A SKCM 34666408 + 34666388 34666428 41 CCAAGGAGCCAAAAAAGGGTCAAGGGAGCCTCTTTCTCAGC CCAAGGAGCCAAAAAAGGGTCAAAGGAGCCTCTTTCTCAGC < 41bp 0.709696979851097 0.453489593217827 0.50110865 0.2738139 prediction 0.419393959702194 Functional Loss - C1orf94 ENSG00000142698 CDS Human protein_coding chr1:34666408 chr1:34666411 nonsynonymous SNV 0.622 1 24 hm5C_associated_SNPs_90121 0 0 0 0 1 C1orf94 chr1:34666373 3'AG 34666373 Downstream 39bp
chr12 7288893 7288893 1 + G A UCEC 7288890 + 7288870 7288910 41 GAGACCTGTGATGAACCACTCTGGAACATTCAGGCCACCAT GAGACCTGTGATGAACCACTCTGAAACATTCAGGCCACCAT < 41bp 0.782603099128161 0.572909003020816 0.60392755 0.30658102 prediction 0.41938819221469 Functional Loss - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7288890 chr12:7288893 stopgain 0.995 1 24 hm5C_associated_SNPs_90122 0 0 1 0 2 CLSTN3 chr12:7288802 3'AG 7288802 Downstream 92bp
chr12 7288893 7288893 1 + G A UCEC 7288890 + 7288870 7288910 41 GAGACCTGTGATGAACCACTCTGGAACATTCAGGCCACCAT GAGACCTGTGATGAACCACTCTGAAACATTCAGGCCACCAT < 41bp 0.782603099128161 0.572909003020816 0.60392755 0.30658102 prediction 0.41938819221469 Functional Loss - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7288890 chr12:7288893 stopgain 0.995 1 24 hm5C_associated_SNPs_90122 0 0 1 0 2 CLSTN3 chr12:7288987 5'GT 7288987 Upstream 95bp
chr11 64361128 64361128 1 + G A LUAD 64361125 + 64361105 64361145 41 AGTGATGGAGTGGACGGCGGCACGGGCCCGACCCTTGGTGA AGTGATGGAGTGGACGGCGGCACAGGCCCGACCCTTGGTGA < 41bp 0.802329362917337 0.592635344645693 0.84853065 0.7636416 prediction 0.41938803654329 Functional Loss - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64361125 chr11:64361128 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_90123 0 0 0 0 1 SLC22A12 chr11:64361107 3'AG 64361107 Downstream 22bp
chr11 12264317 12264317 1 + C T UCEC 12264315 + 12264295 12264335 41 GTTTGGACACGGGGATTTCCCGCAGGTAAACATGGGGCTTT GTTTGGACACGGGGATTTCCCGTAGGTAAACATGGGGCTTT < 41bp 0.709692389826788 0.466007086590975 0.93248165 0.9199592 prediction 0.419384779653577 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12264315 chr11:12264317 stopgain 0.994 0 23 hm5C_associated_SNPs_90125 0 0 0 4 2 MICAL2 chr11:12264218 3'AG 12264218 Downstream 100bp
chr11 12264317 12264317 1 + C T UCEC 12264315 + 12264295 12264335 41 GTTTGGACACGGGGATTTCCCGCAGGTAAACATGGGGCTTT GTTTGGACACGGGGATTTCCCGTAGGTAAACATGGGGCTTT < 41bp 0.709692389826788 0.466007086590975 0.93248165 0.9199592 prediction 0.419384779653577 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12264315 chr11:12264317 stopgain 0.994 0 23 hm5C_associated_SNPs_90125 0 0 0 4 2 MICAL2 chr11:12264319 5'GT 12264319 Upstream 3bp
chr10 7763676 7763676 1 + C T COAD 7763673 + 7763653 7763693 41 ATGCCCTAACTGCCGGGAGACTGCGGTAGATGGGGAACTGG ATGCCCTAACTGCCGGGAGACTGTGGTAGATGGGGAACTGG < 41bp 0.76897566657766 0.559285035296085 0.79328716 0.32948655 prediction 0.419381262563151 Functional Loss - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7763673 chr10:7763676 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_90126 0 0 1 0 2 ITIH2 chr10:7763612 3'AG 7763612 Downstream 65bp
chr10 7763676 7763676 1 + C T COAD 7763673 + 7763653 7763693 41 ATGCCCTAACTGCCGGGAGACTGCGGTAGATGGGGAACTGG ATGCCCTAACTGCCGGGAGACTGTGGTAGATGGGGAACTGG < 41bp 0.76897566657766 0.559285035296085 0.79328716 0.32948655 prediction 0.419381262563151 Functional Loss - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7763673 chr10:7763676 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_90126 0 0 1 0 2 ITIH2 chr10:7763740 5'GT 7763740 Upstream 65bp
chr12 40689399 40689399 1 + G A LAML 40689396 + 40689376 40689416 41 ATTTGGAGCATCTTGAAAAGCTGGAGCTTCACCAGAATGCA ATTTGGAGCATCTTGAAAAGCTGAAGCTTCACCAGAATGCA < 41bp 0.74924997122087 0.539559712961805 0.086083114 0.060771555 prediction 0.41938051651813 Functional Loss - LRRK2 ENSG00000188906 CDS Human protein_coding chr12:40689396 chr12:40689399 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_90127 0 0 0 0 1 LRRK2 chr12:40689446 5'GT 40689446 Upstream 48bp
chr16 85936695 85936695 1 + G T LUAD 85936692 + 85936672 85936712 41 GATTGACAGTAGCATGTATCCAGGACTGATTTGGGAGAATG GATTGACAGTAGCATGTATCCAGTACTGATTTGGGAGAATG < 41bp 0.934710790512678 0.72502083923527 0.88894415 0.20918104 prediction 0.419379902554815 Functional Loss - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85936692 chr16:85936695 nonsynonymous SNV 0.983 5 24 hm5C_associated_SNPs_90128 0 0 0 0 1 IRF8 chr16:85936621 3'AG 85936621 Downstream 75bp
chr10 17702545 17702545 1 + T C rs41289333 17702544 + 17702524 17702564 41 TAAAGTTGGTCAGTCTCGCACTGGGTAAGTATTTAGCGTTT TAAAGTTGGTCAGTCTCGCACCGGGTAAGTATTTAGCGTTT < 41bp 0.709686994339955 0.479746744931791 0.83516365 0.88604766 prediction 0.419373988679911 Functional Loss - STAM ENSG00000136738 CDS Human protein_coding chr10:17702544 chr10:17702545 synonymous SNV . 0 22 hm5C_associated_SNPs_90129 0 0 1 0 2 STAM chr10:17702463 3'AG 17702463 Downstream 83bp
chr10 17702545 17702545 1 + T C rs41289333 17702544 + 17702524 17702564 41 TAAAGTTGGTCAGTCTCGCACTGGGTAAGTATTTAGCGTTT TAAAGTTGGTCAGTCTCGCACCGGGTAAGTATTTAGCGTTT < 41bp 0.709686994339955 0.479746744931791 0.83516365 0.88604766 prediction 0.419373988679911 Functional Loss - STAM ENSG00000136738 CDS Human protein_coding chr10:17702544 chr10:17702545 synonymous SNV . 0 22 hm5C_associated_SNPs_90129 0 0 1 0 2 STAM chr10:17702547 5'GT 17702547 Upstream 3bp
chr7 152550658 152550658 1 + C T STAD 152550656 + 152550636 152550676 41 TTCGGAGGCTCCATGCTGGCCTCGACTGTAAGTCCCTCTCT TTCGGAGGCTCCATGCTGGCCTTGACTGTAAGTCCCTCTCT < 41bp 0.846315479495028 0.636633511044766 0.30402213 0.12335244 prediction 0.419363936900525 Functional Loss - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152550656 chr7:152550658 nonsynonymous SNV 0.945 3 23 hm5C_associated_SNPs_90133 0 0 1 0 2 ACTR3B chr7:152550579 3'AG 152550579 Downstream 80bp
chr7 152550658 152550658 1 + C T STAD 152550656 + 152550636 152550676 41 TTCGGAGGCTCCATGCTGGCCTCGACTGTAAGTCCCTCTCT TTCGGAGGCTCCATGCTGGCCTTGACTGTAAGTCCCTCTCT < 41bp 0.846315479495028 0.636633511044766 0.30402213 0.12335244 prediction 0.419363936900525 Functional Loss - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152550656 chr7:152550658 nonsynonymous SNV 0.945 3 23 hm5C_associated_SNPs_90133 0 0 1 0 2 ACTR3B chr7:152550662 5'GT 152550662 Upstream 5bp
chr1 170695487 170695487 1 + C T BLCA 170695485 + 170695465 170695505 41 TGTGGAGCAGCCCATCGTACCTCGTCCTGCTCCGAGACCCA TGTGGAGCAGCCCATCGTACCTTGTCCTGCTCCGAGACCCA < 41bp 0.709681818847776 0.420897870231078 0.23036054 0.076387346 prediction 0.419363637695552 Functional Loss - PRRX1 ENSG00000116132 CDS Human protein_coding chr1:170695485 chr1:170695487 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_90134 0 0 0 0 1 PRRX1 chr1:170695542 5'GT 170695542 Upstream 56bp
chr1 160326498 160326498 1 + G A COAD 160326495 + 160326475 160326515 41 TGGCACAGTGGTCAACCTCACCCGAGAGCAGTGCCAGGATC TGGCACAGTGGTCAACCTCACCCAAGAGCAGTGCCAGGATC < 41bp 0.809146214289688 0.599465307285732 0.08586806 0.07017431 prediction 0.419361814007911 Functional Loss - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160326495 chr1:160326498 nonsynonymous SNV 0.981 0 24 hm5C_associated_SNPs_90136 0 0 1 0 1 NCSTN chr1:160326544 5'GT 160326544 Upstream 47bp
chr8 85774642 85774642 1 + G A KIRC 85774639 + 85774619 85774659 41 AGGGGGAAAGGAGTCTTTTCCATGAAAGGTGGATCGAGATC AGGGGGAAAGGAGTCTTTTCCATAAAAGGTGGATCGAGATC < 41bp 0.713027763239395 0.503351521715762 0.2803225 0.30954656 prediction 0.419352483047266 Functional Loss - RALYL ENSG00000184672 CDS Human protein_coding chr8:85774639 chr8:85774642 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_90141 0 0 0 0 1 RALYL chr8:85774688 5'GT 85774688 Upstream 47bp
chr17 42428482 42428482 1 + C T LIHC 42428479 + 42428459 42428499 41 CTGATCCAGAGTAAGTGCCTCTCCAAGGAGAACGCTACCAC CTGATCCAGAGTAAGTGCCTCTCTAAGGAGAACGCTACCAC < 41bp 0.709674972254395 0.47441703564863 0.9450507 0.9044062 prediction 0.419349944508789 Functional Loss - GRN ENSG00000030582 CDS Human protein_coding chr17:42428479 chr17:42428482 synonymous SNV . 0 24 hm5C_associated_SNPs_90146 0 0 1 0 2 GRN chr17:42428405 3'AG 42428405 Downstream 78bp
chr17 42428482 42428482 1 + C T LIHC 42428479 + 42428459 42428499 41 CTGATCCAGAGTAAGTGCCTCTCCAAGGAGAACGCTACCAC CTGATCCAGAGTAAGTGCCTCTCTAAGGAGAACGCTACCAC < 41bp 0.709674972254395 0.47441703564863 0.9450507 0.9044062 prediction 0.419349944508789 Functional Loss - GRN ENSG00000030582 CDS Human protein_coding chr17:42428479 chr17:42428482 synonymous SNV . 0 24 hm5C_associated_SNPs_90146 0 0 1 0 2 GRN chr17:42428531 5'GT 42428531 Upstream 50bp
chr1 241712982 241712982 1 + C T UCEC 241712980 + 241712960 241713000 41 TGCTTCCAATGTCTCAGATACTCGAGTGGCTACCTTCACAC TGCTTCCAATGTCTCAGATACTTGAGTGGCTACCTTCACAC < 41bp 0.876931242694621 0.667256852565424 0.8593631 0.43930015 prediction 0.419348780258395 Functional Loss - KMO ENSG00000117009 CDS Human protein_coding chr1:241712980 chr1:241712982 stopgain 0.574 1 23 hm5C_associated_SNPs_90147 0 0 0 0 2 KMO chr1:241712977 3'AG 241712977 Downstream 6bp
chr1 241712982 241712982 1 + C T UCEC 241712980 + 241712960 241713000 41 TGCTTCCAATGTCTCAGATACTCGAGTGGCTACCTTCACAC TGCTTCCAATGTCTCAGATACTTGAGTGGCTACCTTCACAC < 41bp 0.876931242694621 0.667256852565424 0.8593631 0.43930015 prediction 0.419348780258395 Functional Loss - KMO ENSG00000117009 CDS Human protein_coding chr1:241712980 chr1:241712982 stopgain 0.574 1 23 hm5C_associated_SNPs_90147 0 0 0 0 2 KMO chr1:241713074 5'GT 241713074 Upstream 93bp
chr1 12711332 12711332 1 + G T LUSC 12711328 + 12711308 12711348 41 GGCGAGGCATCATCTTCTACCATGGAGGGGCCACAGTATTT GGCGAGGCATCATCTTCTACCATGTAGGGGCCACAGTATTT < 41bp 0.709672406956677 0.499654349446573 0.36242738 0.21130392 prediction 0.419344813913355 Functional Loss - AADACL4 ENSG00000204518 CDS Human protein_coding chr1:12711328 chr1:12711332 nonsynonymous SNV 0.953 5 25 hm5C_associated_SNPs_90150 0 0 0 0 1 AADACL4 chr1:12711358 5'GT 12711358 Upstream 27bp
chr1 12711331 12711331 1 + G A LUSC 12711328 + 12711308 12711348 41 GGCGAGGCATCATCTTCTACCATGGAGGGGCCACAGTATTT GGCGAGGCATCATCTTCTACCATAGAGGGGCCACAGTATTT < 41bp 0.709672406956677 0.455084029000947 0.36242738 0.27187327 prediction 0.419344813913355 Functional Loss - AADACL4 ENSG00000204518 CDS Human protein_coding chr1:12711328 chr1:12711331 nonsynonymous SNV 0.959 5 24 hm5C_associated_SNPs_90151 0 0 0 0 1 AADACL4 chr1:12711358 5'GT 12711358 Upstream 28bp
chr1 55207145 55207145 1 + A C LUSC 55207144 + 55207124 55207164 41 GTAGGATCCTCTCCTTTTTGCAAGAATTTTCTCCGGGGGAG GTAGGATCCTCTCCTTTTTGCCAGAATTTTCTCCGGGGGAG < 41bp 0.709672146961912 0.45453561739141 0.26894397 0.31103504 prediction 0.419344293923825 Functional Loss - TTC4 ENSG00000243725 CDS Human protein_coding chr1:55207144 chr1:55207145 nonsynonymous SNV 0.987 1 22 hm5C_associated_SNPs_90152 0 0 1 0 1 TTC4 chr1:55207084 3'AG 55207084 Downstream 62bp
chr3 148876570 148876570 1 + G A BLCA 148876567 + 148876547 148876587 41 GAGGATGGATTACAGAAATACGAGAGAGGATTAATCTTTTA GAGGATGGATTACAGAAATACGAAAGAGGATTAATCTTTTA < 41bp 0.774901171678192 0.565230272036825 0.24107909 0.17668405 prediction 0.419341799282733 Functional Loss - HPS3 ENSG00000163755 CDS Human protein_coding chr3:148876567 chr3:148876570 synonymous SNV . 0 24 hm5C_associated_SNPs_90154 0 0 1 0 1 HPS3 chr3:148876633 5'GT 148876633 Upstream 64bp
chr4 81196091 81196091 1 + G T UCEC 81196089 + 81196069 81196109 41 TGGAAATATTTGCTGTGTCTCAGGGGATTGTAGGAATACGA TGGAAATATTTGCTGTGTCTCATGGGATTGTAGGAATACGA < 41bp 0.709665002853863 0.36997475920682 0.9279051 0.875366 prediction 0.419330005707726 Functional Loss - FGF5 ENSG00000138675 CDS Human protein_coding chr4:81196089 chr4:81196091 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_90156 0 0 0 0 1 FGF5 chr4:81196063 3'AG 81196063 Downstream 29bp
chr2 27304967 27304967 1 + G T COAD 27304963 + 27304943 27304983 41 CTCCTCAGGTCCTGGGGAGTCAGAGAAGGTGCAGCAGCTGG CTCCTCAGGTCCTGGGGAGTCAGATAAGGTGCAGCAGCTGG < 41bp 0.729322783016708 0.519661713232155 0.89117444 0.83614075 prediction 0.419322139569106 Functional Loss - EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27304963 chr2:27304967 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_90158 0 0 1 0 1 EMILIN1 chr2:27304951 3'AG 27304951 Downstream 17bp
chr1 151263209 151263209 1 + C T UCEC 151263206 + 151263186 151263226 41 TTCAGGGGCCAGGTCGGAAACGCCGCCAGTCTTCTGACTCT TTCAGGGGCCAGGTCGGAAACGCTGCCAGTCTTCTGACTCT < 41bp 0.709648037849454 0.492591984059838 0.41619697 0.20698002 prediction 0.419296075698907 Functional Loss - ZNF687 ENSG00000143373 CDS Human protein_coding chr1:151263206 chr1:151263209 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_90163 0 0 1 0 1 ZNF687 chr1:151263191 3'AG 151263191 Downstream 19bp
chr4 141458692 141458692 1 + G A SKCM 141458689 + 141458669 141458709 41 CTACAGCATGAAGAGCTACTCATGAAGGTAAATTTCTGTTT CTACAGCATGAAGAGCTACTCATAAAGGTAAATTTCTGTTT < 41bp 0.772175979507194 0.56253054984185 0.2620867 0.09235495 prediction 0.419290859330689 Functional Loss - ELMOD2 ENSG00000179387 CDS Human protein_coding chr4:141458689 chr4:141458692 nonsynonymous SNV 0.538 0 24 hm5C_associated_SNPs_90164 0 0 0 0 1 ELMOD2 chr4:141458695 5'GT 141458695 Upstream 4bp
chr6 32008268 32008268 1 + G A UCEC 32008265 + 32008245 32008285 41 GGTCCCCTACAAGGACCGTGCACGGCTGCCCTTGCTCAATG GGTCCCCTACAAGGACCGTGCACAGCTGCCCTTGCTCAATG < 41bp 0.733780884592446 0.524137598424912 0.80591106 0.12878591 prediction 0.419286572335067 Functional Loss - CYP21A2 ENSG00000231852 CDS Human protein_coding chr6:32008265 chr6:32008268 nonsynonymous SNV 0.410 0 24 hm5C_associated_SNPs_90166 0 0 0 0 2 CYP21A2 chr6:32008183 3'AG 32008183 Downstream 86bp
chr6 32008268 32008268 1 + G A UCEC 32008265 + 32008245 32008285 41 GGTCCCCTACAAGGACCGTGCACGGCTGCCCTTGCTCAATG GGTCCCCTACAAGGACCGTGCACAGCTGCCCTTGCTCAATG < 41bp 0.733780884592446 0.524137598424912 0.80591106 0.12878591 prediction 0.419286572335067 Functional Loss - CYP21A2 ENSG00000231852 CDS Human protein_coding chr6:32008265 chr6:32008268 nonsynonymous SNV 0.410 0 24 hm5C_associated_SNPs_90166 0 0 0 0 2 CYP21A2 chr6:32008361 5'GT 32008361 Upstream 94bp
chr19 39760411 39760411 1 + C T UCEC 39760409 + 39760389 39760429 41 GCCCACGGCAGGGCCCAGGACCCGGGGCCGCCTCCACCATT GCCCACGGCAGGGCCCAGGACCTGGGGCCGCCTCCACCATT < 41bp 0.818045316665703 0.608406404573105 0.5824996 0.4218601 prediction 0.419277824185196 Functional Loss - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39760409 chr19:39760411 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_90172 0 0 0 0 2 IFNL2 chr19:39760378 3'AG 39760378 Downstream 34bp
chr19 39760411 39760411 1 + C T UCEC 39760409 + 39760389 39760429 41 GCCCACGGCAGGGCCCAGGACCCGGGGCCGCCTCCACCATT GCCCACGGCAGGGCCCAGGACCTGGGGCCGCCTCCACCATT < 41bp 0.818045316665703 0.608406404573105 0.5824996 0.4218601 prediction 0.419277824185196 Functional Loss - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39760409 chr19:39760411 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_90172 0 0 0 0 2 IFNL2 chr19:39760461 5'GT 39760461 Upstream 51bp
chr2 61019382 61019382 1 + C T SKCM 61019379 + 61019359 61019399 41 TAATGGAACACCTTTTAATTCTCCAGCGTCCAAGTCTGATA TAATGGAACACCTTTTAATTCTCTAGCGTCCAAGTCTGATA < 41bp 0.80450666213078 0.594868781477593 0.9175692 0.41618544 prediction 0.419275761306375 Functional Loss - PAPOLG ENSG00000115421 CDS Human protein_coding chr2:61019379 chr2:61019382 nonsynonymous SNV 0.197 4 24 hm5C_associated_SNPs_90173 0 0 0 0 1 PAPOLG chr2:61019424 5'GT 61019424 Upstream 43bp
chr11 61491043 61491043 1 + C T UCEC 61491040 + 61491020 61491060 41 GTAACCTGCGGACCTACAACCTGCGGTCAGTCAGCGGGCTG GTAACCTGCGGACCTACAACCTGTGGTCAGTCAGCGGGCTG < 41bp 0.712081009438207 0.502445721182916 0.5733684 0.3841143 prediction 0.41927057651058 Functional Loss - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61491040 chr11:61491043 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_90175 0 0 1 0 1 DAGLA chr11:61491044 5'GT 61491044 Upstream 2bp
chr11 1857820 1857820 1 + C T SKCM 1857818 + 1857798 1857838 41 GCTGGGCCCGCCGGCTGCCACTCAGGTGAGGTGCTGGTCAC GCTGGGCCCGCCGGCTGCCACTTAGGTGAGGTGCTGGTCAC < 41bp 0.816901434164647 0.607268635959562 0.2101917 0.32862812 prediction 0.419265596410171 Functional Loss - SYT8 ENSG00000149043 CDS Human protein_coding chr11:1857818 chr11:1857820 stopgain 0.011 0 23 hm5C_associated_SNPs_90177 0 0 1 0 1 SYT8 chr11:1857822 5'GT 1857822 Upstream 3bp
chr12 121132708 121132708 1 + G A KIRC 121132705 + 121132685 121132725 41 GTGTTGGGCATAGCACAGCTCACGATGAAATTATACCTATG GTGTTGGGCATAGCACAGCTCACAATGAAATTATACCTATG < 41bp 0.79603314629124 0.586400403756872 0.58538467 0.15125963 prediction 0.419265485068736 Functional Loss - MLEC ENSG00000110917 CDS Human protein_coding chr12:121132705 chr12:121132708 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_90178 0 0 1 0 2 MLEC chr12:121132627 3'AG 121132627 Downstream 82bp
chr12 121132708 121132708 1 + G A KIRC 121132705 + 121132685 121132725 41 GTGTTGGGCATAGCACAGCTCACGATGAAATTATACCTATG GTGTTGGGCATAGCACAGCTCACAATGAAATTATACCTATG < 41bp 0.79603314629124 0.586400403756872 0.58538467 0.15125963 prediction 0.419265485068736 Functional Loss - MLEC ENSG00000110917 CDS Human protein_coding chr12:121132705 chr12:121132708 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_90178 0 0 1 0 2 MLEC chr12:121132803 5'GT 121132803 Upstream 96bp
chrX 53456842 53456842 1 + G T UCEC 53456838 + 53456818 53456858 41 GCTGCGCCTCGCCATGGATGCACAGGCCACCCATCTGGCCA GCTGCGCCTCGCCATGGATGCACATGCCACCCATCTGGCCA < 41bp 0.751097854855133 0.541467983076953 0.122691214 0.06585175 prediction 0.419259743556359 Functional Loss - RIBC1 ENSG00000158423 CDS Human protein_coding chrX:53456838 chrX:53456842 nonsynonymous SNV 0.004 3 25 hm5C_associated_SNPs_90181 0 0 0 0 2 RIBC1 chrX:53456802 3'AG 53456802 Downstream 41bp
chrX 53456842 53456842 1 + G T UCEC 53456838 + 53456818 53456858 41 GCTGCGCCTCGCCATGGATGCACAGGCCACCCATCTGGCCA GCTGCGCCTCGCCATGGATGCACATGCCACCCATCTGGCCA < 41bp 0.751097854855133 0.541467983076953 0.122691214 0.06585175 prediction 0.419259743556359 Functional Loss - RIBC1 ENSG00000158423 CDS Human protein_coding chrX:53456838 chrX:53456842 nonsynonymous SNV 0.004 3 25 hm5C_associated_SNPs_90181 0 0 0 0 2 RIBC1 chrX:53456920 5'GT 53456920 Upstream 79bp
chr16 89169066 89169066 1 + G A LUSC 89169063 + 89169043 89169083 41 CCAAAGACGACGTGATCCTCCACGTGCTCCCGCTGCACCAC CCAAAGACGACGTGATCCTCCACATGCTCCCGCTGCACCAC < 41bp 0.814323423174762 0.604695416515595 0.64326936 0.20935798 prediction 0.419256013318334 Functional Loss - ACSF3 ENSG00000176715 CDS Human protein_coding chr16:89169063 chr16:89169066 nonsynonymous SNV 0.891 1 24 hm5C_associated_SNPs_90182 0 0 1 0 1 ACSF3 chr16:89169012 3'AG 89169012 Downstream 55bp
chr18 52262309 52262309 1 + T C UCEC 52262308 + 52262288 52262328 41 TCCTTGCACATTCAAGATGTCTACAGTCAGAATCCTGTAAC TCCTTGCACATTCAAGATGTCCACAGTCAGAATCCTGTAAC < 41bp 0.820312897619462 0.610689130870851 0.21551645 0.059493005 prediction 0.419247533497223 Functional Loss - DYNAP ENSG00000178690 CDS Human protein_coding chr18:52262308 chr18:52262309 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_90184 0 0 0 0 1 DYNAP chr18:52262334 5'GT 52262334 Upstream 26bp
chr19 17263502 17263502 1 + G T UCEC 17263500 + 17263480 17263520 41 AAAAGTCTCGCCTGGTGTCTCAGGAGAAGGATGAGAGGTAG AAAAGTCTCGCCTGGTGTCTCATGAGAAGGATGAGAGGTAG < 41bp 0.70962275192534 0.362891612048507 0.88458973 0.4160361 prediction 0.419245503850679 Functional Loss - MYO9B ENSG00000099331 CDS Human protein_coding chr19:17263500 chr19:17263502 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_90185 0 0 1 0 2 MYO9B chr19:17263454 3'AG 17263454 Downstream 49bp
chr19 17263502 17263502 1 + G T UCEC 17263500 + 17263480 17263520 41 AAAAGTCTCGCCTGGTGTCTCAGGAGAAGGATGAGAGGTAG AAAAGTCTCGCCTGGTGTCTCATGAGAAGGATGAGAGGTAG < 41bp 0.70962275192534 0.362891612048507 0.88458973 0.4160361 prediction 0.419245503850679 Functional Loss - MYO9B ENSG00000099331 CDS Human protein_coding chr19:17263500 chr19:17263502 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_90185 0 0 1 0 2 MYO9B chr19:17263516 5'GT 17263516 Upstream 15bp
chr1 156880096 156880096 1 + G A SKCM 156880093 + 156880073 156880113 41 TGTAGCAACACCTGCACCTGCAAGAATGGGGGCACCTGTCT TGTAGCAACACCTGCACCTGCAAAAATGGGGGCACCTGTCT < 41bp 0.709619114723393 0.458222628788547 0.3194893 0.2187182 prediction 0.419238229446785 Functional Loss - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156880093 chr1:156880096 synonymous SNV . 0 24 hm5C_associated_SNPs_90188 0 0 0 0 2 PEAR1 chr1:156880026 3'AG 156880026 Downstream 71bp
chr1 156880096 156880096 1 + G A SKCM 156880093 + 156880073 156880113 41 TGTAGCAACACCTGCACCTGCAAGAATGGGGGCACCTGTCT TGTAGCAACACCTGCACCTGCAAAAATGGGGGCACCTGTCT < 41bp 0.709619114723393 0.458222628788547 0.3194893 0.2187182 prediction 0.419238229446785 Functional Loss - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156880093 chr1:156880096 synonymous SNV . 0 24 hm5C_associated_SNPs_90188 0 0 0 0 2 PEAR1 chr1:156880172 5'GT 156880172 Upstream 77bp
chr12 50453669 50453669 1 + G A BLCA 50453666 + 50453646 50453686 41 AGTTCTACGACCGAGCTGGGCACGACATTCGAGACATGCTG AGTTCTACGACCGAGCTGGGCACAACATTCGAGACATGCTG < 41bp 0.709618670284989 0.466780205750076 0.15155503 0.09502885 prediction 0.419237340569978 Functional Loss - ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50453666 chr12:50453669 nonsynonymous SNV 0.980 1 24 hm5C_associated_SNPs_90189 0 0 0 0 1 ASIC1 chr12:50453737 5'GT 50453737 Upstream 69bp
chr12 50453668 50453668 1 + C T BRCA 50453666 + 50453646 50453686 41 AGTTCTACGACCGAGCTGGGCACGACATTCGAGACATGCTG AGTTCTACGACCGAGCTGGGCATGACATTCGAGACATGCTG < 41bp 0.709618670284989 0.423866446987103 0.15155503 0.246625 prediction 0.419237340569978 Functional Loss - ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50453666 chr12:50453668 synonymous SNV . 0 23 hm5C_associated_SNPs_90190 0 0 0 0 1 ASIC1 chr12:50453737 5'GT 50453737 Upstream 70bp
chr19 55593919 55593919 1 + C T SKCM 55593916 + 55593896 55593936 41 GCTGCTGCGGGACAACGTCACTCCACGTGAAAACGAGCTCT GCTGCTGCGGGACAACGTCACTCTACGTGAAAACGAGCTCT < 41bp 0.771614517347348 0.561999484458702 0.93296826 0.925467 prediction 0.419230065777292 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55593916 chr19:55593919 nonsynonymous SNV 0.223 0 24 hm5C_associated_SNPs_90193 0 0 0 0 2 EPS8L1 chr19:55593822 3'AG 55593822 Downstream 98bp
chr19 55593919 55593919 1 + C T SKCM 55593916 + 55593896 55593936 41 GCTGCTGCGGGACAACGTCACTCCACGTGAAAACGAGCTCT GCTGCTGCGGGACAACGTCACTCTACGTGAAAACGAGCTCT < 41bp 0.771614517347348 0.561999484458702 0.93296826 0.925467 prediction 0.419230065777292 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55593916 chr19:55593919 nonsynonymous SNV 0.223 0 24 hm5C_associated_SNPs_90193 0 0 0 0 2 EPS8L1 chr19:55593970 5'GT 55593970 Upstream 52bp
chr1 44395863 44395863 1 + C T UCEC 44395861 + 44395841 44395881 41 TGCGGAAGCTGGTGAAAGCTCGCGTCATCACTGATCTAAGC TGCGGAAGCTGGTGAAAGCTCGTGTCATCACTGATCTAAGC < 41bp 0.71245988937111 0.502845382047202 0.2718474 0.13149011 prediction 0.419229014647816 Functional Loss - ST3GAL3 ENSG00000126091 CDS Human protein_coding chr1:44395861 chr1:44395863 nonsynonymous SNV 0.620 1 23 hm5C_associated_SNPs_90194 0 0 0 0 1 ST3GAL3 chr1:44395804 3'AG 44395804 Downstream 60bp
chr16 89178534 89178534 1 + G T LUSC 89178531 + 89178511 89178551 41 GTTCTTAAGTTCTGAAACGCCGCGGATCAATGTCTTTATGG GTTCTTAAGTTCTGAAACGCCGCTGATCAATGTCTTTATGG < 41bp 0.709614478758474 0.323657120991842 0.1943042 0.25056618 prediction 0.419228957516949 Functional Loss - ACSF3 ENSG00000176715 CDS Human protein_coding chr16:89178531 chr16:89178534 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_90195 0 0 1 1 1 ACSF3 chr16:89178500 3'AG 89178500 Downstream 35bp
chr16 89178533 89178533 1 + C T UCEC 89178531 + 89178511 89178551 41 GTTCTTAAGTTCTGAAACGCCGCGGATCAATGTCTTTATGG GTTCTTAAGTTCTGAAACGCCGTGGATCAATGTCTTTATGG < 41bp 0.709614478758474 0.450298820154562 0.1943042 0.19699562 prediction 0.419228957516949 Functional Loss - ACSF3 ENSG00000176715 CDS Human protein_coding chr16:89178531 chr16:89178533 nonsynonymous SNV 0.007 2 23 hm5C_associated_SNPs_90196 0 0 1 1 1 ACSF3 chr16:89178500 3'AG 89178500 Downstream 34bp
chr21 45798933 45798933 1 + G A SKCM 45798930 + 45798910 45798950 41 CCCTGTGTGGTTGTGGAGGGCTCGGGCCGCGTGGCCGACGT CCCTGTGTGGTTGTGGAGGGCTCAGGCCGCGTGGCCGACGT < 41bp 0.79410961934737 0.58449888970966 0.61644447 0.3814621 prediction 0.419221459275421 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45798930 chr21:45798933 synonymous SNV . 0 24 hm5C_associated_SNPs_90198 0 0 0 0 1 TRPM2 chr21:45798880 3'AG 45798880 Downstream 54bp
chr22 25598690 25598690 1 + C T rs145770544 25598688 + 25598668 25598708 41 CAAGGCAAACGCTGCGAGCTCTCGGCCGAGTGCCCCAGCCT CAAGGCAAACGCTGCGAGCTCTTGGCCGAGTGCCCCAGCCT < 41bp 0.851862607182917 0.642253088660966 0.36986566 0.20295417 prediction 0.419219037043902 Functional Loss - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25598688 chr22:25598690 nonsynonymous SNV 0.687 0 23 hm5C_associated_SNPs_90199 0 0 0 0 2 CRYBB3 chr22:25598641 3'AG 25598641 Downstream 50bp
chr22 25598690 25598690 1 + C T rs145770544 25598688 + 25598668 25598708 41 CAAGGCAAACGCTGCGAGCTCTCGGCCGAGTGCCCCAGCCT CAAGGCAAACGCTGCGAGCTCTTGGCCGAGTGCCCCAGCCT < 41bp 0.851862607182917 0.642253088660966 0.36986566 0.20295417 prediction 0.419219037043902 Functional Loss - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25598688 chr22:25598690 nonsynonymous SNV 0.687 0 23 hm5C_associated_SNPs_90199 0 0 0 0 2 CRYBB3 chr22:25598759 5'GT 25598759 Upstream 70bp
chr3 183823717 183823717 1 + G A CESC 183823714 + 183823694 183823734 41 GGCTACAACGTCTTCCTGCTCATGATGAGTGACTTGCTCCC GGCTACAACGTCTTCCTGCTCATAATGAGTGACTTGCTCCC < 41bp 0.816243380335991 0.606636614877723 0.2623337 0.18731079 prediction 0.419213530916536 Functional Loss - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183823714 chr3:183823717 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_90202 0 0 0 0 1 HTR3E chr3:183823757 5'GT 183823757 Upstream 41bp
chr22 25282671 25282671 1 + G A UCEC 25282668 + 25282648 25282688 41 CTCCTGGGCCACTACCAGTTCGGGATGACGGAAACAGAAAG CTCCTGGGCCACTACCAGTTCGGAATGACGGAAACAGAAAG < 41bp 0.820307990676544 0.610702938337545 0.7380034 0.4058052 prediction 0.419210104677998 Functional Loss - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25282668 chr22:25282671 synonymous SNV . 0 24 hm5C_associated_SNPs_90204 0 0 0 0 1 SGSM1 chr22:25282695 5'GT 25282695 Upstream 25bp
chr8 22465547 22465547 1 + G A STAD 22465544 + 22465524 22465564 41 ACCTGAACAGATTTCCTGCCCGGGGCCCTCATGGACGGTTG ACCTGAACAGATTTCCTGCCCGGAGCCCTCATGGACGGTTG < 41bp 0.821018972578088 0.611414642782283 0.68710726 0.29984802 prediction 0.419208659591609 Functional Loss - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22465544 chr8:22465547 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_90205 0 0 1 0 2 CCAR2 chr8:22465482 3'AG 22465482 Downstream 66bp
chr8 22465547 22465547 1 + G A STAD 22465544 + 22465524 22465564 41 ACCTGAACAGATTTCCTGCCCGGGGCCCTCATGGACGGTTG ACCTGAACAGATTTCCTGCCCGGAGCCCTCATGGACGGTTG < 41bp 0.821018972578088 0.611414642782283 0.68710726 0.29984802 prediction 0.419208659591609 Functional Loss - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22465544 chr8:22465547 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_90205 0 0 1 0 2 CCAR2 chr8:22465578 5'GT 22465578 Upstream 32bp
chr1 32671257 32671257 1 + G C rs372465027 32671256 + 32671236 32671276 41 AATGACGTACTTCGCAGGCGCGCGGGCGGGCCTGGCAGTTG AATGACGTACTTCGCAGGCGCCCGGGCGGGCCTGGCAGTTG < 41bp 0.86691428024526 0.657311462365236 0.54878855 0.34051 prediction 0.419205635760047 Functional Loss - IQCC ENSG00000224066 ncRNA_exonic Human protein_coding chr1:32671256 chr1:32671257 . . 0 22 hm5C_associated_SNPs_90206 0 0 0 0 1 IQCC chr1:32671324 5'GT 32671324 Upstream 68bp
chr9 135762921 135762921 1 + G A rs2231406 135762918 + 135762898 135762938 41 TCCTGGAGAAATGCAAAACCCTCGTTAGCCAAAGCAACGAC TCCTGGAGAAATGCAAAACCCTCATTAGCCAAAGCAACGAC < 41bp 0.811795723857362 0.602195191704546 0.022396445 0.023270696 prediction 0.419201064305633 Functional Loss - SPACA9 ENSG00000165698 CDS Human protein_coding chr9:135762918 chr9:135762921 nonsynonymous SNV 0.963 1 24 hm5C_associated_SNPs_90208 0 0 0 0 1 SPACA9 chr9:135762958 5'GT 135762958 Upstream 38bp
chr9 130482603 130482603 1 + G T BLCA 130482599 + 130482579 130482619 41 GCCTGCCTCACGCTCATCACCAACGAGCTGAAGCAGGACAC GCCTGCCTCACGCTCATCACCAACTAGCTGAAGCAGGACAC < 41bp 0.720350225249471 0.51075034679466 0.088089526 0.04294288 prediction 0.419199756909622 Functional Loss - TTC16 ENSG00000167094 CDS Human protein_coding chr9:130482599 chr9:130482603 stopgain 0.025 1 25 hm5C_associated_SNPs_90209 0 0 0 0 1 TTC16 chr9:130482674 5'GT 130482674 Upstream 72bp
chr5 68706340 68706340 1 + G T UCEC 68706337 + 68706317 68706357 41 CAGCTCAGATTTCTTTTATCCAAGATATTGGAAGGCTCCCT CAGCTCAGATTTCTTTTATCCAATATATTGGAAGGCTCCCT < 41bp 0.709599094974308 0.344074057134051 0.4671789 0.23569646 prediction 0.419198189948617 Functional Loss - RAD17 ENSG00000152942 CDS Human protein_coding chr5:68706337 chr5:68706340 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_90211 0 0 1 0 2 RAD17 chr5:68706320 3'AG 68706320 Downstream 21bp
chr5 68706340 68706340 1 + G T UCEC 68706337 + 68706317 68706357 41 CAGCTCAGATTTCTTTTATCCAAGATATTGGAAGGCTCCCT CAGCTCAGATTTCTTTTATCCAATATATTGGAAGGCTCCCT < 41bp 0.709599094974308 0.344074057134051 0.4671789 0.23569646 prediction 0.419198189948617 Functional Loss - RAD17 ENSG00000152942 CDS Human protein_coding chr5:68706337 chr5:68706340 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_90211 0 0 1 0 2 RAD17 chr5:68706377 5'GT 68706377 Upstream 38bp
chr2 118583133 118583133 1 + A T OV 118583129 + 118583109 118583149 41 AGCGAGAGGACTAGACATTCCTGAAGTCGACTGGATTGTTC AGCGAGAGGACTAGACATTCCTGATGTCGACTGGATTGTTC < 41bp 0.893786514272614 0.684190147614475 0.40788794 0.29525185 prediction 0.419192733316278 Functional Loss - DDX18 ENSG00000088205 CDS Human protein_coding chr2:118583129 chr2:118583133 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_90212 0 0 1 0 1 DDX18 chr2:118583175 5'GT 118583175 Upstream 43bp
chr4 3255173 3255173 1 + C T SKCM 3255171 + 3255151 3255191 41 GGCCGCTTCGAGGATGATCGCTCCGACAGCTCCTCCAGCTT GGCCGCTTCGAGGATGATCGCTTCGACAGCTCCTCCAGCTT < 41bp 0.709594270180709 0.425763913526945 0.124298036 0.16262347 prediction 0.419188540361417 Functional Loss - MSANTD1 ENSG00000188981 CDS Human protein_coding chr4:3255171 chr4:3255173 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_90213 0 0 0 0 1 MSANTD1 chr4:3255209 5'GT 3255209 Upstream 37bp
chr19 8495557 8495557 1 + G T LUAD 8495555 + 8495535 8495575 41 CCTGCAGTGGCTGAAGGACCCGGGGCCGCGGACGGAGAAGC CCTGCAGTGGCTGAAGGACCCGTGGCCGCGGACGGAGAAGC < 41bp 0.921514558114646 0.71192175951632 0.9031948 0.29678684 prediction 0.419185597196651 Functional Loss - MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8495555 chr19:8495557 nonsynonymous SNV 0.909 3 23 hm5C_associated_SNPs_90214 0 0 0 0 1 MARCH2 chr19:8495542 3'AG 8495542 Downstream 16bp
chr11 122756889 122756889 1 + G T ESCA 122756885 + 122756865 122756905 41 AAAACCACCATACCTGGGACCAGGGCGCCAATAACAGGTAA AAAACCACCATACCTGGGACCAGGTCGCCAATAACAGGTAA < 41bp 0.723041594890409 0.513449599132263 0.76257765 0.30066934 prediction 0.419183991516292 Functional Loss - C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122756885 chr11:122756889 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_90215 0 0 0 0 1 C11orf63 chr11:122756901 5'GT 122756901 Upstream 13bp
chr1 25627529 25627529 1 + G A rs77813628 25627526 + 25627506 25627546 41 TGCCTGCCAAAGCCTCTACCCGAGGGAACGGAGGATAAAGA TGCCTGCCAAAGCCTCTACCCGAAGGAACGGAGGATAAAGA < 41bp 0.709590804734867 0.465440779959772 0.842443 0.33253825 prediction 0.419181609469733 Functional Loss - RHD ENSG00000187010 CDS Human protein_coding chr1:25627526 chr1:25627529 synonymous SNV . 0 24 hm5C_associated_SNPs_90217 0 0 1 0 3 RHD chr1:25627437 3'AG 25627437 Downstream 93bp
chr1 25627529 25627529 1 + G A rs77813628 25627526 + 25627506 25627546 41 TGCCTGCCAAAGCCTCTACCCGAGGGAACGGAGGATAAAGA TGCCTGCCAAAGCCTCTACCCGAAGGAACGGAGGATAAAGA < 41bp 0.709590804734867 0.465440779959772 0.842443 0.33253825 prediction 0.419181609469733 Functional Loss - RHD ENSG00000187010 CDS Human protein_coding chr1:25627526 chr1:25627529 synonymous SNV . 0 24 hm5C_associated_SNPs_90217 0 0 1 0 3 RHD chr1:25627441 3'AG 25627441 Downstream 89bp
chr1 25627529 25627529 1 + G A rs77813628 25627526 + 25627506 25627546 41 TGCCTGCCAAAGCCTCTACCCGAGGGAACGGAGGATAAAGA TGCCTGCCAAAGCCTCTACCCGAAGGAACGGAGGATAAAGA < 41bp 0.709590804734867 0.465440779959772 0.842443 0.33253825 prediction 0.419181609469733 Functional Loss - RHD ENSG00000187010 CDS Human protein_coding chr1:25627526 chr1:25627529 synonymous SNV . 0 24 hm5C_associated_SNPs_90217 0 0 1 0 3 RHD chr1:25627584 5'GT 25627584 Upstream 56bp
chr17 45753793 45753793 1 + T C COAD 45753792 + 45753772 45753812 41 CAGTGTTGGGTGGTGAATTCCTCAAGTACATGGAGGCCTTT CAGTGTTGGGTGGTGAATTCCCCAAGTACATGGAGGCCTTT < 41bp 0.709581476401231 0.435461339942179 0.7483171 0.12891802 prediction 0.419162952802462 Functional Loss - KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45753792 chr17:45753793 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_90221 0 0 1 0 1 KPNB1 chr17:45753857 5'GT 45753857 Upstream 65bp
chr17 4800048 4800048 1 + C T rs201261291 4800045 + 4800025 4800065 41 TCTGTGGAGACGGGCCACCTCGACGGGGTCTTCATGCACAA TCTGTGGAGACGGGCCACCTCGATGGGGTCTTCATGCACAA < 41bp 0.736495312689697 0.526913863724683 0.590512 0.24802697 prediction 0.419162897930027 Functional Loss - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4800045 chr17:4800048 synonymous SNV . 0 24 hm5C_associated_SNPs_90222 0 0 1 0 2 MINK1 chr17:4799969 3'AG 4799969 Downstream 80bp
chr17 4800048 4800048 1 + C T rs201261291 4800045 + 4800025 4800065 41 TCTGTGGAGACGGGCCACCTCGACGGGGTCTTCATGCACAA TCTGTGGAGACGGGCCACCTCGATGGGGTCTTCATGCACAA < 41bp 0.736495312689697 0.526913863724683 0.590512 0.24802697 prediction 0.419162897930027 Functional Loss - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4800045 chr17:4800048 synonymous SNV . 0 24 hm5C_associated_SNPs_90222 0 0 1 0 2 MINK1 chr17:4800108 5'GT 4800108 Upstream 61bp
chr5 157178427 157178427 1 + C T SARC 157178424 + 157178404 157178444 41 AAGGCAGCCCTCTGGGTGAACTCCATCGCTGTATCCGTGAG AAGGCAGCCCTCTGGGTGAACTCTATCGCTGTATCCGTGAG < 41bp 0.789836855461203 0.580255530017379 0.95157623 0.9020126 prediction 0.419162650887647 Functional Loss - LSM11 ENSG00000155858 CDS Human protein_coding chr5:157178424 chr5:157178427 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_90223 0 0 1 0 1 LSM11 chr5:157178398 3'AG 157178398 Downstream 30bp
chr18 670798 670798 1 + C T LUAD 670796 + 670776 670816 41 AGAGATCGGGAGACATGGGCCTCGGTGTGCCTTTCAACATC AGAGATCGGGAGACATGGGCCTTGGTGTGCCTTTCAACATC < 41bp 0.870055362115046 0.660474108392969 0.6678439 0.28673762 prediction 0.419162507444154 Functional Loss - TYMS ENSG00000176890 CDS Human protein_coding chr18:670796 chr18:670798 synonymous SNV . 0 23 hm5C_associated_SNPs_90224 0 0 1 0 1 TYMS chr18:670867 5'GT 670867 Upstream 70bp
chr17 33591261 33591261 1 + C T OV 33591258 + 33591238 33591278 41 TCTACAAGGAACTCTTCTCACAACATAAAGGACTCAGAGAC TCTACAAGGAACTCTTCTCACAATATAAAGGACTCAGAGAC < 41bp 0.72626336356498 0.516685870877773 0.17288092 0.16713911 prediction 0.419154985374414 Functional Loss - SLFN5 ENSG00000166750 CDS Human protein_coding chr17:33591258 chr17:33591261 nonsynonymous SNV 0.795 0 24 hm5C_associated_SNPs_90226 0 0 1 0 1 SLFN5 chr17:33591202 3'AG 33591202 Downstream 60bp
chr1 156348183 156348183 1 + C T LAML 156348180 + 156348160 156348200 41 GTCTACCATTCAGACCTCTTCGCCATGATTGGTGAGGCCTT GTCTACCATTCAGACCTCTTCGCTATGATTGGTGAGGCCTT < 41bp 0.757262705186478 0.547686673014021 0.8198881 0.27326483 prediction 0.419152064344915 Functional Loss - RHBG ENSG00000132677 CDS Human protein_coding chr1:156348180 chr1:156348183 synonymous SNV . 0 24 hm5C_associated_SNPs_90228 0 0 1 0 2 RHBG chr1:156348190 5'GT 156348190 Upstream 8bp
chr1 156348183 156348183 1 + C T LAML 156348180 + 156348160 156348200 41 GTCTACCATTCAGACCTCTTCGCCATGATTGGTGAGGCCTT GTCTACCATTCAGACCTCTTCGCTATGATTGGTGAGGCCTT < 41bp 0.757262705186478 0.547686673014021 0.8198881 0.27326483 prediction 0.419152064344915 Functional Loss - RHBG ENSG00000132677 CDS Human protein_coding chr1:156348180 chr1:156348183 synonymous SNV . 0 24 hm5C_associated_SNPs_90228 0 0 1 0 2 RHBG chr1:156348204 5'GT 156348204 Upstream 22bp
chr11 33047239 33047239 1 + G T GBM 33047236 + 33047216 33047256 41 GCTCAGAAGCCATTTGGAGCCACGTATGTATGGAGCAGCAT GCTCAGAAGCCATTTGGAGCCACTTATGTATGGAGCAGCAT < 41bp 0.709575534853361 0.328941431459149 0.14058611 0.08962047 prediction 0.419151069706723 Functional Loss - DEPDC7 ENSG00000121690 CDS Human protein_coding chr11:33047236 chr11:33047239 synonymous SNV . 0 24 hm5C_associated_SNPs_90229 0 0 1 0 1 DEPDC7 chr11:33047205 3'AG 33047205 Downstream 35bp
chr15 58471453 58471453 1 + G A SKCM 58471450 + 58471430 58471470 41 TTATTGTCATTGCTTCCTCCCTGGGACTGAACAGTGGCTGT TTATTGTCATTGCTTCCTCCCTGAGACTGAACAGTGGCTGT < 41bp 0.795848670954415 0.58627350319223 0.19153184 0.1075145 prediction 0.41915033552437 Functional Loss - AQP9 ENSG00000103569 CDS Human protein_coding chr15:58471450 chr15:58471453 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_90230 0 0 0 0 1 AQP9 chr15:58471544 5'GT 58471544 Upstream 92bp
chr19 57743984 57743984 1 + C T GBM 57743981 + 57743961 57744001 41 GTACCTGATTCTGGAATATGCTCCAAGGGGTGAGCTCTACA GTACCTGATTCTGGAATATGCTCTAAGGGGTGAGCTCTACA < 41bp 0.805808397760854 0.596236160038925 0.9426056 0.9167238 prediction 0.419144475443858 Functional Loss - AURKC ENSG00000105146 CDS Human protein_coding chr19:57743981 chr19:57743984 nonsynonymous SNV 0.988 1 24 hm5C_associated_SNPs_90231 0 0 1 0 2 AURKC chr19:57743910 3'AG 57743910 Downstream 75bp
chr19 57743984 57743984 1 + C T GBM 57743981 + 57743961 57744001 41 GTACCTGATTCTGGAATATGCTCCAAGGGGTGAGCTCTACA GTACCTGATTCTGGAATATGCTCTAAGGGGTGAGCTCTACA < 41bp 0.805808397760854 0.596236160038925 0.9426056 0.9167238 prediction 0.419144475443858 Functional Loss - AURKC ENSG00000105146 CDS Human protein_coding chr19:57743981 chr19:57743984 nonsynonymous SNV 0.988 1 24 hm5C_associated_SNPs_90231 0 0 1 0 2 AURKC chr19:57744048 5'GT 57744048 Upstream 65bp
chr12 49663698 49663698 1 + G A READ 49663695 + 49663675 49663715 41 AGATGCTGCCAATAACTATGCCCGAGGGCACTACACCATTG AGATGCTGCCAATAACTATGCCCAAGGGCACTACACCATTG < 41bp 0.809122483491402 0.599552448750736 0.13884431 0.035144925 prediction 0.419140069481332 Functional Loss - TUBA1C ENSG00000167553 CDS Human protein_coding chr12:49663695 chr12:49663698 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_90232 0 0 0 0 2 TUBA1C chr12:49663611 3'AG 49663611 Downstream 88bp
chr12 49663698 49663698 1 + G A READ 49663695 + 49663675 49663715 41 AGATGCTGCCAATAACTATGCCCGAGGGCACTACACCATTG AGATGCTGCCAATAACTATGCCCAAGGGCACTACACCATTG < 41bp 0.809122483491402 0.599552448750736 0.13884431 0.035144925 prediction 0.419140069481332 Functional Loss - TUBA1C ENSG00000167553 CDS Human protein_coding chr12:49663695 chr12:49663698 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_90232 0 0 0 0 2 TUBA1C chr12:49663759 5'GT 49663759 Upstream 62bp
chr1 43675583 43675583 1 + C T SKCM 43675581 + 43675561 43675601 41 CAGGCCCATGCCGGTCCTATCACCAAGGTGAGCAGGGCCCT CAGGCCCATGCCGGTCCTATCATCAAGGTGAGCAGGGCCCT < 41bp 0.865532514443311 0.655966469638939 0.59288526 0.34729534 prediction 0.419132089608744 Functional Loss - CFAP57 ENSG00000243710 CDS Human protein_coding chr1:43675581 chr1:43675583 nonsynonymous SNV 0.944 2 23 hm5C_associated_SNPs_90237 0 0 0 0 1 CFAP57 chr1:43675587 5'GT 43675587 Upstream 5bp
chr10 102750280 102750280 1 + C T UCEC 102750278 + 102750258 102750298 41 ACCTGCAGTTCATGATGGGTCACGAGCAGCTGTCCACAGAC ACCTGCAGTTCATGATGGGTCATGAGCAGCTGTCCACAGAC < 41bp 0.86232754795338 0.652763752366126 0.08850494 0.09911832 prediction 0.419127591174507 Functional Loss - TWNK ENSG00000107815 CDS Human protein_coding chr10:102750278 chr10:102750280 synonymous SNV . 0 23 hm5C_associated_SNPs_90239 0 0 1 0 2 TWNK chr10:102750193 3'AG 102750193 Downstream 88bp
chr10 102750280 102750280 1 + C T UCEC 102750278 + 102750258 102750298 41 ACCTGCAGTTCATGATGGGTCACGAGCAGCTGTCCACAGAC ACCTGCAGTTCATGATGGGTCATGAGCAGCTGTCCACAGAC < 41bp 0.86232754795338 0.652763752366126 0.08850494 0.09911832 prediction 0.419127591174507 Functional Loss - TWNK ENSG00000107815 CDS Human protein_coding chr10:102750278 chr10:102750280 synonymous SNV . 0 23 hm5C_associated_SNPs_90239 0 0 1 0 2 TWNK chr10:102750300 5'GT 102750300 Upstream 21bp
chr9 96422788 96422788 1 + C T rs73523907 96422786 + 96422766 96422806 41 CCATCCCCAACCTGGACCTGCTCGAAGCCCACACCAAGGAG CCATCCCCAACCTGGACCTGCTTGAAGCCCACACCAAGGAG < 41bp 0.709562101970109 0.413469063368885 0.24645609 0.18559375 prediction 0.419124203940218 Functional Loss - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96422786 chr9:96422788 synonymous SNV . 0 23 hm5C_associated_SNPs_90241 0 0 1 0 1 PHF2 chr9:96422842 5'GT 96422842 Upstream 55bp
chr9 96422789 96422789 1 + G A UCEC 96422786 + 96422766 96422806 41 CCATCCCCAACCTGGACCTGCTCGAAGCCCACACCAAGGAG CCATCCCCAACCTGGACCTGCTCAAAGCCCACACCAAGGAG < 41bp 0.709562101970109 0.453359493934972 0.24645609 0.3295895 prediction 0.419124203940218 Functional Loss - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96422786 chr9:96422789 nonsynonymous SNV 0.944 4 24 hm5C_associated_SNPs_90242 0 0 1 0 1 PHF2 chr9:96422842 5'GT 96422842 Upstream 54bp
chr11 864504 864504 1 + C T HNSC 864502 + 864482 864522 41 GCCATCCTCTTCTTCGCCTACACGGACAAGGTACGGCTGCC GCCATCCTCTTCTTCGCCTACATGGACAAGGTACGGCTGCC < 41bp 0.709562099377133 0.449342660445116 0.18432519 0.33049583 prediction 0.419124198754265 Functional Loss - TSPAN4 ENSG00000214063 CDS Human protein_coding chr11:864502 chr11:864504 nonsynonymous SNV 0.846 0 23 hm5C_associated_SNPs_90243 0 0 1 0 2 TSPAN4 chr11:864437 3'AG 864437 Downstream 68bp
chr11 864504 864504 1 + C T HNSC 864502 + 864482 864522 41 GCCATCCTCTTCTTCGCCTACACGGACAAGGTACGGCTGCC GCCATCCTCTTCTTCGCCTACATGGACAAGGTACGGCTGCC < 41bp 0.709562099377133 0.449342660445116 0.18432519 0.33049583 prediction 0.419124198754265 Functional Loss - TSPAN4 ENSG00000214063 CDS Human protein_coding chr11:864502 chr11:864504 nonsynonymous SNV 0.846 0 23 hm5C_associated_SNPs_90243 0 0 1 0 2 TSPAN4 chr11:864511 5'GT 864511 Upstream 8bp
chr7 73791082 73791082 1 + G C HNSC 73791081 + 73791061 73791101 41 AACAGGAGGTCGAGAGTTTGCGGGAGAAGCTCCTGGTGGCT AACAGGAGGTCGAGAGTTTGCCGGAGAAGCTCCTGGTGGCT < 41bp 0.891140696999401 0.681581427813202 0.93081075 0.9126076 prediction 0.419118538372397 Functional Loss - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73791081 chr7:73791082 nonsynonymous SNV 0.980 1 22 hm5C_associated_SNPs_90245 0 0 1 0 1 CLIP2 chr7:73791152 5'GT 73791152 Upstream 71bp
chr22 37331475 37331475 1 + C T GBM 37331472 + 37331452 37331492 41 GCCCTCCGCTTCTGTGGCATCTACGGGTACAGGTGAGGGGA GCCCTCCGCTTCTGTGGCATCTATGGGTACAGGTGAGGGGA < 41bp 0.709556331903178 0.498635348204519 0.4096815 0.3602892 prediction 0.419112663806356 Functional Loss - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37331472 chr22:37331475 synonymous SNV . 0 24 hm5C_associated_SNPs_90247 0 0 0 0 2 CSF2RB chr22:37331393 3'AG 37331393 Downstream 83bp
chr22 37331475 37331475 1 + C T GBM 37331472 + 37331452 37331492 41 GCCCTCCGCTTCTGTGGCATCTACGGGTACAGGTGAGGGGA GCCCTCCGCTTCTGTGGCATCTATGGGTACAGGTGAGGGGA < 41bp 0.709556331903178 0.498635348204519 0.4096815 0.3602892 prediction 0.419112663806356 Functional Loss - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37331472 chr22:37331475 synonymous SNV . 0 24 hm5C_associated_SNPs_90247 0 0 0 0 2 CSF2RB chr22:37331483 5'GT 37331483 Upstream 9bp
chr15 45436404 45436404 1 + C T COAD 45436401 + 45436381 45436421 41 GCAACCGTGGACGCCGCACTCTGCTGCTCAAGATCCCCAAG GCAACCGTGGACGCCGCACTCTGTTGCTCAAGATCCCCAAG < 41bp 0.712168710428242 0.502614144066861 0.62481576 0.6891723 prediction 0.419109132722763 Functional Loss - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45436401 chr15:45436404 synonymous SNV . 0 24 hm5C_associated_SNPs_90250 0 0 0 0 1 DUOX1 chr15:45436433 5'GT 45436433 Upstream 30bp
chr18 77208917 77208917 1 + G A SKCM 77208914 + 77208894 77208934 41 AGACCGTGTCCACCACCAGCCACGAGGCCATCCTCTCCAAC AGACCGTGTCCACCACCAGCCACAAGGCCATCCTCTCCAAC < 41bp 0.8022350739662 0.592682942661551 0.12730923 0.12784895 prediction 0.419104262609298 Functional Loss - NFATC1 ENSG00000131196 CDS Human protein_coding chr18:77208914 chr18:77208917 nonsynonymous SNV 0.986 4 24 hm5C_associated_SNPs_90252 0 0 0 0 1 NFATC1 chr18:77208984 5'GT 77208984 Upstream 68bp
chr16 88738461 88738461 1 + G A rs147373909 88738458 + 88738438 88738478 41 GCTGTGACCATGAGGGCTATCCCGACGAGCTGCCGTGGACC GCTGTGACCATGAGGGCTATCCCAACGAGCTGCCGTGGACC < 41bp 0.784467210131829 0.574921605589546 0.4089593 0.34884465 prediction 0.419091209084566 Functional Loss - SNAI3-AS1 ENSG00000260630 ncRNA_exonic Human antisense chr16:88738458 chr16:88738461 . . 0 24 hm5C_associated_SNPs_90256 0 0 1 0 1 SNAI3-AS1 chr16:88738530 5'GT 88738530 Upstream 70bp
chr8 48353063 48353063 1 + C T BLCA 48353061 + 48353041 48353081 41 CCAAGGAGACTGCAGGCTACCTCAGGGGCCGTCCCCAGGAC CCAAGGAGACTGCAGGCTACCTTAGGGGCCGTCCCCAGGAC < 41bp 0.814788609318967 0.605243075800322 0.20509142 0.05579886 prediction 0.419091067037289 Functional Loss - SPIDR ENSG00000164808 CDS Human protein_coding chr8:48353061 chr8:48353063 synonymous SNV . 0 23 hm5C_associated_SNPs_90257 0 0 1 11 1 SPIDR chr8:48353104 5'GT 48353104 Upstream 42bp
chr19 33605197 33605197 1 + G A UCEC 33605194 + 33605174 33605214 41 CCAGATGGGATACCTCTAAACACGAAAAGAAAGAAGATTCC CCAGATGGGATACCTCTAAACACAAAAAGAAAGAAGATTCC < 41bp 0.709541693583978 0.487023355997424 0.17695141 0.31850284 prediction 0.419083387167955 Functional Loss - GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33605194 chr19:33605197 nonsynonymous SNV 0.948 2 24 hm5C_associated_SNPs_90261 0 0 0 0 1 GPATCH1 chr19:33605159 3'AG 33605159 Downstream 39bp
chr16 67261759 67261759 1 + G C UCEC 67261758 + 67261738 67261778 41 GCCCAAGGGCAAAGTGGGCACGAGAGGGAAGAAGCAGATAT GCCCAAGGGCAAAGTGGGCACCAGAGGGAAGAAGCAGATAT < 41bp 0.895908010630982 0.686366777109604 0.5987758 0.50751173 prediction 0.419082467042754 Functional Loss - TMEM208 ENSG00000168701 CDS Human protein_coding chr16:67261758 chr16:67261759 synonymous SNV . 0 22 hm5C_associated_SNPs_90263 0 0 1 0 2 TMEM208 chr16:67261739 3'AG 67261739 Downstream 21bp
chr16 67261759 67261759 1 + G C UCEC 67261758 + 67261738 67261778 41 GCCCAAGGGCAAAGTGGGCACGAGAGGGAAGAAGCAGATAT GCCCAAGGGCAAAGTGGGCACCAGAGGGAAGAAGCAGATAT < 41bp 0.895908010630982 0.686366777109604 0.5987758 0.50751173 prediction 0.419082467042754 Functional Loss - TMEM208 ENSG00000168701 CDS Human protein_coding chr16:67261758 chr16:67261759 synonymous SNV . 0 22 hm5C_associated_SNPs_90263 0 0 1 0 2 TMEM208 chr16:67261834 5'GT 67261834 Upstream 76bp
chr1 162760587 162760587 1 + G C rs369084131 162760586 + 162760566 162760606 41 TGCTTGGAAGTGTGAGTGCGCGAAGATGCGAAAGGTGGTTT TGCTTGGAAGTGTGAGTGCGCCAAGATGCGAAAGGTGGTTT < 41bp 0.70953802613686 0.402605642299825 0.507249 0.33746397 prediction 0.419076052273721 Functional Loss - HSD17B7 ENSG00000132196 UTR5 Human protein_coding chr1:162760586 chr1:162760587 . . 0 22 hm5C_associated_SNPs_90266 0 0 1 0 1 HSD17B7 chr1:162760625 5'GT 162760625 Upstream 39bp
chr1 43779639 43779639 1 + G A LGG 43779636 + 43779616 43779656 41 ACCTTCACCTACCAGTCAGGCTCGGTCAGTGACCCGCCCCG ACCTTCACCTACCAGTCAGGCTCAGTCAGTGACCCGCCCCG < 41bp 0.709530568558662 0.466014391443795 0.5343441 0.398961 prediction 0.419061137117323 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43779636 chr1:43779639 synonymous SNV . 0 24 hm5C_associated_SNPs_90269 0 0 0 0 1 TIE1 chr1:43779639 5'GT 43779639 Upstream 1bp
chr4 15713435 15713435 1 + G A CESC 15713432 + 15713412 15713452 41 TGTCTACTTACCCCTTAGGACTCGATTACCAATCCTGCCCT TGTCTACTTACCCCTTAGGACTCAATTACCAATCCTGCCCT < 41bp 0.799541028843882 0.59001054576728 0.41368604 0.2028777 prediction 0.419060966153204 Functional Loss - BST1 ENSG00000109743 CDS Human protein_coding chr4:15713432 chr4:15713435 nonsynonymous SNV 0.523 2 24 hm5C_associated_SNPs_90270 0 0 0 0 2 BST1 chr4:15713430 3'AG 15713430 Downstream 6bp
chr4 15713435 15713435 1 + G A CESC 15713432 + 15713412 15713452 41 TGTCTACTTACCCCTTAGGACTCGATTACCAATCCTGCCCT TGTCTACTTACCCCTTAGGACTCAATTACCAATCCTGCCCT < 41bp 0.799541028843882 0.59001054576728 0.41368604 0.2028777 prediction 0.419060966153204 Functional Loss - BST1 ENSG00000109743 CDS Human protein_coding chr4:15713432 chr4:15713435 nonsynonymous SNV 0.523 2 24 hm5C_associated_SNPs_90270 0 0 0 0 2 BST1 chr4:15713512 5'GT 15713512 Upstream 78bp
chr19 18964096 18964096 1 + C T HNSC 18964093 + 18964073 18964113 41 TGCAGGGGGATGAGATATGCCTGCGGTACAAAGGGGACCTT TGCAGGGGGATGAGATATGCCTGTGGTACAAAGGGGACCTT < 41bp 0.70952639327238 0.483528586639593 0.80478793 0.67273754 prediction 0.419052786544759 Functional Loss - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18964093 chr19:18964096 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_90273 0 0 1 0 2 UPF1 chr19:18964061 3'AG 18964061 Downstream 36bp
chr19 18964096 18964096 1 + C T HNSC 18964093 + 18964073 18964113 41 TGCAGGGGGATGAGATATGCCTGCGGTACAAAGGGGACCTT TGCAGGGGGATGAGATATGCCTGTGGTACAAAGGGGACCTT < 41bp 0.70952639327238 0.483528586639593 0.80478793 0.67273754 prediction 0.419052786544759 Functional Loss - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18964093 chr19:18964096 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_90273 0 0 1 0 2 UPF1 chr19:18964159 5'GT 18964159 Upstream 64bp
chr16 57394457 57394457 1 + C T rs147844594 57394455 + 57394435 57394475 41 TACTGGACCTCAGACTCCTGCCCGAGGCCTGGCGTGGTGTG TACTGGACCTCAGACTCCTGCCTGAGGCCTGGCGTGGTGTG < 41bp 0.709524415774698 0.422697994456399 0.2450369 0.26920915 prediction 0.419048831549395 Functional Loss - CCL22 ENSG00000102962 CDS Human protein_coding chr16:57394455 chr16:57394457 nonsynonymous SNV 0.454 0 23 hm5C_associated_SNPs_90274 0 0 0 0 1 CCL22 chr16:57394472 5'GT 57394472 Upstream 16bp
chr19 55086405 55086405 1 + C T LGG 55086403 + 55086383 55086423 41 TTCTCCGTGGGCCCCGTGAGCCCGAGTCGCAGGTGGTCGTA TTCTCCGTGGGCCCCGTGAGCCTGAGTCGCAGGTGGTCGTA < 41bp 0.845279975564035 0.63575971424057 0.2919978 0.31154275 prediction 0.419040522646929 Functional Loss - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55086403 chr19:55086405 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_90279 0 0 0 0 1 LILRA2 chr19:55086500 5'GT 55086500 Upstream 96bp
chr20 1099430 1099430 1 + A T OV 1099426 + 1099406 1099446 41 CGCGGGCGCTCATGGCGGGCCTGGAGGTACTGTTCGCATCG CGCGGGCGCTCATGGCGGGCCTGGTGGTACTGTTCGCATCG < 41bp 0.88255798333621 0.673047187557632 0.5837277 0.5583673 prediction 0.419021591557158 Functional Loss - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1099426 chr20:1099430 nonsynonymous SNV 0.826 4 25 hm5C_associated_SNPs_90287 0 0 1 0 1 PSMF1 chr20:1099396 3'AG 1099396 Downstream 35bp
chr17 80684371 80684371 1 + G T HNSC 80684368 + 80684348 80684388 41 CTGTGCAGGTGAATGACTGGCAGGAGGACTGGGTCGTGTTC CTGTGCAGGTGAATGACTGGCAGTAGGACTGGGTCGTGTTC < 41bp 0.937835202530461 0.728324608819869 0.9022877 0.49061838 prediction 0.419021187421184 Functional Loss - FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80684368 chr17:80684371 stopgain 0.766 0 24 hm5C_associated_SNPs_90288 0 0 1 0 1 FN3KRP chr17:80684356 3'AG 80684356 Downstream 16bp
chr19 39138465 39138465 1 + G T LUAD 39138463 + 39138443 39138483 41 AATGGCGCTGGCGGCGGGGGCAGCATGGGCGACTACATGGC AATGGCGCTGGCGGCGGGGGCATCATGGGCGACTACATGGC < 41bp 0.909333425138295 0.699827033289263 0.9000578 0.8858367 prediction 0.419012783698063 Functional Loss - ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39138463 chr19:39138465 nonsynonymous SNV 0.969 0 23 hm5C_associated_SNPs_90291 0 0 1 0 1 ACTN4 chr19:39138547 5'GT 39138547 Upstream 83bp
chr11 47281376 47281376 1 + G T UCEC 47281374 + 47281354 47281394 41 AGCTGTGGAAGCCAGGCGCACAGGATGCAAGCAGCCAGGCC AGCTGTGGAAGCCAGGCGCACATGATGCAAGCAGCCAGGCC < 41bp 0.919792014580854 0.710287249031821 0.56073356 0.24254388 prediction 0.419009531098067 Functional Loss - NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47281374 chr11:47281376 nonsynonymous SNV 0.032 0 23 hm5C_associated_SNPs_90292 0 0 1 0 1 NR1H3 chr11:47281342 3'AG 47281342 Downstream 35bp
chr19 7830673 7830673 1 + G T LUSC 7830671 + 7830651 7830691 41 GGAGCTGACCCAGCTGAAGGCTGCAGTGGGTGAGTTGCCAG GGAGCTGACCCAGCTGAAGGCTTCAGTGGGTGAGTTGCCAG < 41bp 0.902706358621096 0.693203632265971 0.3912244 0.2867946 prediction 0.419005452710249 Functional Loss - CLEC4M ENSG00000104938 CDS Human protein_coding chr19:7830671 chr19:7830673 nonsynonymous SNV 0.011 2 23 hm5C_associated_SNPs_90293 0 0 0 0 1 CLEC4M chr19:7830748 5'GT 7830748 Upstream 76bp
chr7 86493639 86493639 1 + G A SKCM 86493636 + 86493616 86493656 41 TGCCAACGGTGTGCAATGGGCGGGAAGTCCTCGACTCCACC TGCCAACGGTGTGCAATGGGCGGAAAGTCCTCGACTCCACC < 41bp 0.791569184206445 0.582078340645877 0.28412887 0.11285812 prediction 0.418981687121136 Functional Loss - GRM3 ENSG00000198822 CDS Human protein_coding chr7:86493636 chr7:86493639 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_90299 0 0 0 0 1 GRM3 chr7:86493598 3'AG 86493598 Downstream 42bp
chr3 169644955 169644955 1 + G A COAD 169644952 + 169644932 169644972 41 TGGGGTTTGCCCTCCAGTTCCTCGACCATCTCTGCCAGGTG TGGGGTTTGCCCTCCAGTTCCTCAACCATCTCTGCCAGGTG < 41bp 0.83105346162734 0.621563133282704 0.29961497 0.35316333 prediction 0.418980656689272 Functional Loss - SAMD7 ENSG00000187033 CDS Human protein_coding chr3:169644952 chr3:169644955 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_90300 0 0 0 0 1 SAMD7 chr3:169644969 5'GT 169644969 Upstream 15bp
chr17 7577064 7577064 1 - T A KICH 7577068 - 7577048 7577088 41 ACAGAGGAAGAGAATCTCCGCAAGAAAGGGGAGCCTCACCA ACAGAGGAAGAGAATCTCCGCAAGTAAGGGGAGCCTCACCA < 41bp 0.864127024953645 0.654640242942896 0.2864797 0.27724922 prediction 0.418973564021497 Functional Loss - TP53 ENSG00000141510 CDS Human protein_coding chr17:7577068 chr17:7577064 stopgain 0.700 1 25 hm5C_associated_SNPs_90301 0 0 1 0 2 TP53 chr17:7577019 5'GT 7577019 Upstream 46bp
chr17 7577064 7577064 1 - T A KICH 7577068 - 7577048 7577088 41 ACAGAGGAAGAGAATCTCCGCAAGAAAGGGGAGCCTCACCA ACAGAGGAAGAGAATCTCCGCAAGTAAGGGGAGCCTCACCA < 41bp 0.864127024953645 0.654640242942896 0.2864797 0.27724922 prediction 0.418973564021497 Functional Loss - TP53 ENSG00000141510 CDS Human protein_coding chr17:7577068 chr17:7577064 stopgain 0.700 1 25 hm5C_associated_SNPs_90301 0 0 1 0 2 TP53 chr17:7577155 3'AG 7577155 Downstream 92bp
chr12 94641830 94641830 1 + C T BRCA 94641828 + 94641808 94641848 41 TATCGGGAGGACCCCAGATTCACGGGGTATCGGGTGGAATC TATCGGGAGGACCCCAGATTCATGGGGTATCGGGTGGAATC < 41bp 0.863782375643217 0.6542964655259 0.80811197 0.87348884 prediction 0.418971820234634 Functional Loss - PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94641828 chr12:94641830 nonsynonymous SNV 0.756 2 23 hm5C_associated_SNPs_90302 0 0 0 0 1 PLXNC1 chr12:94641882 5'GT 94641882 Upstream 53bp
chr8 72755870 72755870 1 + G T LUAD 72755866 + 72755846 72755886 41 TGCTCTCCCGAATCCTTGCGCGCCGCGCCCCTACCAGGTTC TGCTCTCCCGAATCCTTGCGCGCCTCGCCCCTACCAGGTTC < 41bp 0.73227217529929 0.522786678487575 0.12685794 0.09769416 prediction 0.41897099362343 Functional Loss - MSC-AS1 ENSG00000235531 CDS Human other chr8:72755866 chr8:72755870 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_90303 0 0 0 1 1 MSC chr8:72755939 5'GT 72755939 Upstream 70bp
chr4 119461423 119461423 1 + C T SARC 119461420 + 119461400 119461440 41 CCTCAACTTCCAAAAGATTCCTCCATTAGTTCATTCCAAAA CCTCAACTTCCAAAAGATTCCTCTATTAGTTCATTCCAAAA < 41bp 0.747250061362986 0.537765917901528 0.94585633 0.91516894 prediction 0.418968286922917 Functional Loss - CEP170P1 ENSG00000154608 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr4:119461420 chr4:119461423 . . 0 24 hm5C_associated_SNPs_90304 0 0 0 0 1 CEP170P1 chr4:119461374 3'AG 119461374 Downstream 50bp
chr17 8170705 8170705 1 + G A UCEC 8170702 + 8170682 8170722 41 CCCCCAAGGTGGTCCCAGCCCCCGAGTCGCCATCTTGCGAG CCCCCAAGGTGGTCCCAGCCCCCAAGTCGCCATCTTGCGAG < 41bp 0.818962356786096 0.609483210769743 0.08502355 0.08286029 prediction 0.418958292032707 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8170702 chr17:8170705 nonsynonymous SNV 0.978 0 24 hm5C_associated_SNPs_90307 0 0 1 0 2 PFAS chr17:8170690 3'AG 8170690 Downstream 16bp
chr17 8170705 8170705 1 + G A UCEC 8170702 + 8170682 8170722 41 CCCCCAAGGTGGTCCCAGCCCCCGAGTCGCCATCTTGCGAG CCCCCAAGGTGGTCCCAGCCCCCAAGTCGCCATCTTGCGAG < 41bp 0.818962356786096 0.609483210769743 0.08502355 0.08286029 prediction 0.418958292032707 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8170702 chr17:8170705 nonsynonymous SNV 0.978 0 24 hm5C_associated_SNPs_90307 0 0 1 0 2 PFAS chr17:8170781 5'GT 8170781 Upstream 77bp
chr1 16356991 16356991 1 + A T UCEC 16356987 + 16356967 16357007 41 TTCTCAGGGGCTGTGACCCACACCATCTCCACGGCGCTGCT TTCTCAGGGGCTGTGACCCACACCTTCTCCACGGCGCTGCT < 41bp 0.709468732831768 0.372237726302184 0.039146125 0.03886673 prediction 0.418937465663535 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16356987 chr1:16356991 nonsynonymous SNV 0.876 4 25 hm5C_associated_SNPs_90311 0 0 0 0 1 CLCNKA chr1:16356956 3'AG 16356956 Downstream 36bp
chr1 44447061 44447061 1 + T C LUAD 44447060 + 44447040 44447080 41 CCCAACGCCACCGCCTCTAGCTCCGGGCTCCCTGAGGTCCC CCCAACGCCACCGCCTCTAGCCCCGGGCTCCCTGAGGTCCC < 41bp 0.83423847004947 0.62477074300115 0.65971535 0.7359967 prediction 0.41893545409664 Functional Loss - B4GALT2 ENSG00000117411 CDS Human protein_coding chr1:44447060 chr1:44447061 nonsynonymous SNV 0.701 0 22 hm5C_associated_SNPs_90312 0 0 1 0 1 B4GALT2 chr1:44447145 5'GT 44447145 Upstream 85bp
chr19 3115014 3115014 1 + C T UCEC 3115012 + 3114992 3115032 41 AGCAGGACGTGCTGCGGGTCCGCGTGCCCACCACCGGCATC AGCAGGACGTGCTGCGGGTCCGTGTGCCCACCACCGGCATC < 41bp 0.842975736863043 0.633509876958722 0.24045742 0.24482879 prediction 0.418931719808641 Functional Loss - GNA11 ENSG00000088256 CDS Human protein_coding chr19:3115012 chr19:3115014 synonymous SNV . 0 23 hm5C_associated_SNPs_90313 0 0 1 0 2 GNA11 chr19:3114942 3'AG 3114942 Downstream 73bp
chr19 3115014 3115014 1 + C T UCEC 3115012 + 3114992 3115032 41 AGCAGGACGTGCTGCGGGTCCGCGTGCCCACCACCGGCATC AGCAGGACGTGCTGCGGGTCCGTGTGCCCACCACCGGCATC < 41bp 0.842975736863043 0.633509876958722 0.24045742 0.24482879 prediction 0.418931719808641 Functional Loss - GNA11 ENSG00000088256 CDS Human protein_coding chr19:3115012 chr19:3115014 synonymous SNV . 0 23 hm5C_associated_SNPs_90313 0 0 1 0 2 GNA11 chr19:3115070 5'GT 3115070 Upstream 57bp
chr7 148481092 148481092 1 + G A rs115991100 148481089 + 148481069 148481109 41 GGTCGCTTCATAAACAACAACGCGGTTACCAAGATGGCCCA GGTCGCTTCATAAACAACAACGCAGTTACCAAGATGGCCCA < 41bp 0.803051331304516 0.593587387142955 0.10234493 0.068436325 prediction 0.418927888323122 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148481089 chr7:148481092 synonymous SNV . 0 24 hm5C_associated_SNPs_90314 0 0 1 0 2 CUL1 chr7:148481063 3'AG 148481063 Downstream 30bp
chr7 148481092 148481092 1 + G A rs115991100 148481089 + 148481069 148481109 41 GGTCGCTTCATAAACAACAACGCGGTTACCAAGATGGCCCA GGTCGCTTCATAAACAACAACGCAGTTACCAAGATGGCCCA < 41bp 0.803051331304516 0.593587387142955 0.10234493 0.068436325 prediction 0.418927888323122 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148481089 chr7:148481092 synonymous SNV . 0 24 hm5C_associated_SNPs_90314 0 0 1 0 2 CUL1 chr7:148481169 5'GT 148481169 Upstream 78bp
chrX 30236732 30236732 1 + G T LUAD 30236729 + 30236709 30236749 41 TCAGAAGAGTAAGCTCCGTGCCCGTGAGAAACGCCGCAAGG TCAGAAGAGTAAGCTCCGTGCCCTTGAGAAACGCCGCAAGG < 41bp 0.709460122813086 0.310058201626756 0.30799413 0.06395435 prediction 0.418920245626173 Functional Loss - MAGEB2 ENSG00000099399 CDS Human protein_coding chrX:30236729 chrX:30236732 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_90316 0 0 1 0 1 MAGEB2 chrX:30236693 3'AG 30236693 Downstream 40bp
chr10 124189173 124189173 1 + G A COAD 124189170 + 124189150 124189190 41 CCGGTCCTTCAGAATCCAAACACGCTTTCCGTCCTACCAAC CCGGTCCTTCAGAATCCAAACACACTTTCCGTCCTACCAAC < 41bp 0.709458733564456 0.463028538488388 0.07120937 0.095541686 prediction 0.418917467128912 Functional Loss - PLEKHA1 ENSG00000107679 CDS Human protein_coding chr10:124189170 chr10:124189173 nonsynonymous SNV 0.035 0 24 hm5C_associated_SNPs_90319 0 0 1 1 1 PLEKHA1 chr10:124189140 3'AG 124189140 Downstream 34bp
chr11 94039716 94039716 1 + C T COAD 94039714 + 94039694 94039734 41 GACAATGCCTGCTGCACCCTCACGACAAGCTGGGAAGCCCA GACAATGCCTGCTGCACCCTCATGACAAGCTGGGAAGCCCA < 41bp 0.856966526894254 0.647510542548713 0.24999985 0.24666232 prediction 0.41891196869108 Functional Loss - IZUMO1R ENSG00000183560 CDS Human protein_coding chr11:94039714 chr11:94039716 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_90323 0 0 0 0 1 IZUMO1R chr11:94039679 3'AG 94039679 Downstream 38bp
chr2 73435720 73435720 1 + G A ESCA 73435717 + 73435697 73435737 41 GAAGAGAGCCCAGCTGGCAGCTCGGCTCAAACTTACAGAGA GAAGAGAGCCCAGCTGGCAGCTCAGCTCAAACTTACAGAGA < 41bp 0.709455870479067 0.473278775021206 0.09083781 0.16531238 prediction 0.418911740958134 Functional Loss - NOTO ENSG00000214513 CDS Human protein_coding chr2:73435717 chr2:73435720 nonsynonymous SNV 0.842 1 24 hm5C_associated_SNPs_90324 0 0 0 0 1 NOTO chr2:73435742 5'GT 73435742 Upstream 23bp
chr21 45810816 45810816 1 + G A UCEC 45810813 + 45810793 45810833 41 GGAGCCAAGACCACTTTGGCCACGAGAACTGGGACCACCAG GGAGCCAAGACCACTTTGGCCACAAGAACTGGGACCACCAG < 41bp 0.709455657234144 0.475027340457984 0.7308483 0.6694064 prediction 0.418911314468289 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45810813 chr21:45810816 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_90325 0 0 0 0 2 TRPM2 chr21:45810787 3'AG 45810787 Downstream 30bp
chr21 45810816 45810816 1 + G A UCEC 45810813 + 45810793 45810833 41 GGAGCCAAGACCACTTTGGCCACGAGAACTGGGACCACCAG GGAGCCAAGACCACTTTGGCCACAAGAACTGGGACCACCAG < 41bp 0.709455657234144 0.475027340457984 0.7308483 0.6694064 prediction 0.418911314468289 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45810813 chr21:45810816 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_90325 0 0 0 0 2 TRPM2 chr21:45810908 5'GT 45810908 Upstream 93bp
chr10 99211590 99211590 1 + C T SKCM 99211588 + 99211568 99211608 41 CTGCGCTCCCTGCTCTACAACTCCTTTGGGGGCAGTGACAC CTGCGCTCCCTGCTCTACAACTTCTTTGGGGGCAGTGACAC < 41bp 0.709455144359677 0.409008978134451 0.25089073 0.2557062 prediction 0.418910288719353 Functional Loss - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99211588 chr10:99211590 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_90326 0 0 1 0 1 ZDHHC16 chr10:99211675 5'GT 99211675 Upstream 86bp
chr3 37493968 37493968 1 + C T COAD 37493966 + 37493946 37493986 41 GGGCGCCTACAACCTCGACCCGCAGCGCCCCGTGCACTTCC GGGCGCCTACAACCTCGACCCGTAGCGCCCCGTGCACTTCC < 41bp 0.709443142579845 0.474044673774373 0.33692542 0.22001037 prediction 0.41888628515969 Functional Loss - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37493966 chr3:37493968 stopgain 0.830 0 23 hm5C_associated_SNPs_90334 0 0 0 0 1 ITGA9 chr3:37494050 5'GT 37494050 Upstream 83bp
chr16 20482506 20482506 1 + G A BLCA 20482503 + 20482483 20482523 41 AAGATGGCAGAACATTCCTACTCGAGCCTGGGCCTCAAGGC AAGATGGCAGAACATTCCTACTCAAGCCTGGGCCTCAAGGC < 41bp 0.814562056020783 0.605123370653922 0.7831825 0.2689194 prediction 0.418877370733723 Functional Loss - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20482503 chr16:20482506 synonymous SNV . 0 24 hm5C_associated_SNPs_90336 0 0 0 0 1 ACSM2A chr16:20482538 5'GT 20482538 Upstream 33bp
chr6 3085627 3085627 1 + C T BLCA 3085625 + 3085605 3085645 41 CTGGGAAGCGAATCCGGAAGCTCGGCCGACATTTCCTGGTA CTGGGAAGCGAATCCGGAAGCTTGGCCGACATTTCCTGGTA < 41bp 0.850643271158052 0.641207011144632 0.6132382 0.5220363 prediction 0.41887252002684 Functional Loss - RIPK1 ENSG00000137275 CDS Human protein_coding chr6:3085625 chr6:3085627 nonsynonymous SNV 0.311 5 23 hm5C_associated_SNPs_90338 0 0 1 0 1 RIPK1 chr6:3085642 5'GT 3085642 Upstream 16bp
chr3 48416948 48416948 1 + T C LUSC 48416947 + 48416927 48416967 41 CCAAAGCAAGAGCTTTGTGCCTGGGATGTGCAAGAGGTGAG CCAAAGCAAGAGCTTTGTGCCCGGGATGTGCAAGAGGTGAG < 41bp 0.789505083219355 0.580072363970856 0.22854963 0.13655898 prediction 0.418865438496997 Functional Loss - FBXW12 ENSG00000164049 CDS Human protein_coding chr3:48416947 chr3:48416948 nonsynonymous SNV 0.780 4 22 hm5C_associated_SNPs_90339 0 0 0 0 1 FBXW12 chr3:48416962 5'GT 48416962 Upstream 15bp
chr3 10916703 10916703 1 + G A SKCM 10916700 + 10916680 10916720 41 TGCTGCTGATCCTCCTGATACGAGGGGTCACGTTGCCCGGG TGCTGCTGATCCTCCTGATACGAAGGGTCACGTTGCCCGGG < 41bp 0.83017074371182 0.62073846596281 0.94715595 0.3134757 prediction 0.41886455549802 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10916700 chr3:10916703 nonsynonymous SNV 0.974 4 24 hm5C_associated_SNPs_90340 0 0 1 0 2 SLC6A11 chr3:10916646 3'AG 10916646 Downstream 58bp
chr3 10916703 10916703 1 + G A SKCM 10916700 + 10916680 10916720 41 TGCTGCTGATCCTCCTGATACGAGGGGTCACGTTGCCCGGG TGCTGCTGATCCTCCTGATACGAAGGGTCACGTTGCCCGGG < 41bp 0.83017074371182 0.62073846596281 0.94715595 0.3134757 prediction 0.41886455549802 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10916700 chr3:10916703 nonsynonymous SNV 0.974 4 24 hm5C_associated_SNPs_90340 0 0 1 0 2 SLC6A11 chr3:10916780 5'GT 10916780 Upstream 78bp
chr9 132980177 132980177 1 + C T STAD 132980174 + 132980154 132980194 41 GCGGCAGGCTTCCAGAAGATCTACAAGCAATTCTTCCCGTT GCGGCAGGCTTCCAGAAGATCTATAAGCAATTCTTCCCGTT < 41bp 0.760591935133597 0.551161501839927 0.88873506 0.588293 prediction 0.418860866587341 Functional Loss - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132980174 chr9:132980177 synonymous SNV . 0 24 hm5C_associated_SNPs_90341 0 0 0 0 2 NCS1 chr9:132980111 3'AG 132980111 Downstream 67bp
chr9 132980177 132980177 1 + C T STAD 132980174 + 132980154 132980194 41 GCGGCAGGCTTCCAGAAGATCTACAAGCAATTCTTCCCGTT GCGGCAGGCTTCCAGAAGATCTATAAGCAATTCTTCCCGTT < 41bp 0.760591935133597 0.551161501839927 0.88873506 0.588293 prediction 0.418860866587341 Functional Loss - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132980174 chr9:132980177 synonymous SNV . 0 24 hm5C_associated_SNPs_90341 0 0 0 0 2 NCS1 chr9:132980249 5'GT 132980249 Upstream 73bp
chr6 127476429 127476429 1 + G A LUSC 127476426 + 127476406 127476446 41 TGGAATCCTTGGAGTCCATGCACGAAGAAGGGAAAAACATG TGGAATCCTTGGAGTCCATGCACAAAGAAGGGAAAAACATG < 41bp 0.785319695487256 0.575895982350749 0.14843127 0.112255305 prediction 0.418847426273012 Functional Loss - RSPO3 ENSG00000146374 CDS Human protein_coding chr6:127476426 chr6:127476429 synonymous SNV . 0 24 hm5C_associated_SNPs_90344 0 0 0 0 1 RSPO3 chr6:127476386 3'AG 127476386 Downstream 44bp
chr11 17629933 17629933 1 + G A rs147318012 17629930 + 17629910 17629950 41 CTTCCAAACCTGCCGGGACCCACGGGCAGCCAGCTGCCGGG CTTCCAAACCTGCCGGGACCCACAGGCAGCCAGCTGCCGGG < 41bp 0.782815346030475 0.573394469433181 0.6158812 0.3691276 prediction 0.418841753194588 Functional Loss - OTOG ENSG00000188162 CDS Human protein_coding chr11:17629930 chr11:17629933 nonsynonymous SNV 0.973 0 24 hm5C_associated_SNPs_90347 1 0 0 0 2 OTOG chr11:17629843 3'AG 17629843 Downstream 91bp
chr11 17629933 17629933 1 + G A rs147318012 17629930 + 17629910 17629950 41 CTTCCAAACCTGCCGGGACCCACGGGCAGCCAGCTGCCGGG CTTCCAAACCTGCCGGGACCCACAGGCAGCCAGCTGCCGGG < 41bp 0.782815346030475 0.573394469433181 0.6158812 0.3691276 prediction 0.418841753194588 Functional Loss - OTOG ENSG00000188162 CDS Human protein_coding chr11:17629930 chr11:17629933 nonsynonymous SNV 0.973 0 24 hm5C_associated_SNPs_90347 1 0 0 0 2 OTOG chr11:17629960 5'GT 17629960 Upstream 28bp
chr19 7589895 7589895 1 + G T ESCA 7589892 + 7589872 7589912 41 CCCCGGGTATGGGACCCAGGCGGGGCCTTCACCGGCCCCTC CCCCGGGTATGGGACCCAGGCGGTGCCTTCACCGGCCCCTC < 41bp 0.931631286308303 0.722211601783704 0.90641487 0.3380103 prediction 0.418839369049198 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7589892 chr19:7589895 nonsynonymous SNV 0.006 1 24 hm5C_associated_SNPs_90349 0 0 0 0 1 MCOLN1 chr19:7589847 3'AG 7589847 Downstream 49bp
chr1 32740367 32740367 1 + G T LUAD 32740365 + 32740345 32740385 41 TCCGAAATGGCTCTGAGGTGCGGGACCCACTGGTTACCTAC TCCGAAATGGCTCTGAGGTGCGTGACCCACTGGTTACCTAC < 41bp 0.91776647554163 0.708348644297172 0.9097805 0.5652309 prediction 0.418835662488916 Functional Loss - LCK ENSG00000182866 CDS Human protein_coding chr1:32740365 chr1:32740367 synonymous SNV . 0 23 hm5C_associated_SNPs_90350 0 0 0 0 2 LCK chr1:32740338 3'AG 32740338 Downstream 30bp
chr1 32740367 32740367 1 + G T LUAD 32740365 + 32740345 32740385 41 TCCGAAATGGCTCTGAGGTGCGGGACCCACTGGTTACCTAC TCCGAAATGGCTCTGAGGTGCGTGACCCACTGGTTACCTAC < 41bp 0.91776647554163 0.708348644297172 0.9097805 0.5652309 prediction 0.418835662488916 Functional Loss - LCK ENSG00000182866 CDS Human protein_coding chr1:32740365 chr1:32740367 synonymous SNV . 0 23 hm5C_associated_SNPs_90350 0 0 0 0 2 LCK chr1:32740419 5'GT 32740419 Upstream 53bp
chr19 35556501 35556501 1 + C T UCEC 35556498 + 35556478 35556518 41 CCCATAATCAGCAATGATGTCTGCAATGGCGCTGACTTCTA CCCATAATCAGCAATGATGTCTGTAATGGCGCTGACTTCTA < 41bp 0.772799976451048 0.563384536510382 0.79562473 0.1383262 prediction 0.418830879881331 Functional Loss - HPN ENSG00000105707 CDS Human protein_coding chr19:35556498 chr19:35556501 synonymous SNV . 0 24 hm5C_associated_SNPs_90354 0 0 0 0 2 HPN chr19:35556443 3'AG 35556443 Downstream 59bp
chr19 35556501 35556501 1 + C T UCEC 35556498 + 35556478 35556518 41 CCCATAATCAGCAATGATGTCTGCAATGGCGCTGACTTCTA CCCATAATCAGCAATGATGTCTGTAATGGCGCTGACTTCTA < 41bp 0.772799976451048 0.563384536510382 0.79562473 0.1383262 prediction 0.418830879881331 Functional Loss - HPN ENSG00000105707 CDS Human protein_coding chr19:35556498 chr19:35556501 synonymous SNV . 0 24 hm5C_associated_SNPs_90354 0 0 0 0 2 HPN chr19:35556585 5'GT 35556585 Upstream 85bp
chr1 16770219 16770219 1 + G T UCEC 16770217 + 16770197 16770237 41 GCCTACATCAAGCTGGAGGACAGGACGTCAGGTAACCGGAA GCCTACATCAAGCTGGAGGACATGACGTCAGGTAACCGGAA < 41bp 0.916239951858626 0.706826395376145 0.07444736 0.062267423 prediction 0.418827112964961 Functional Loss - NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16770217 chr1:16770219 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_90356 0 0 1 0 2 NECAP2 chr1:16770127 3'AG 16770127 Downstream 93bp
chr1 16770219 16770219 1 + G T UCEC 16770217 + 16770197 16770237 41 GCCTACATCAAGCTGGAGGACAGGACGTCAGGTAACCGGAA GCCTACATCAAGCTGGAGGACATGACGTCAGGTAACCGGAA < 41bp 0.916239951858626 0.706826395376145 0.07444736 0.062267423 prediction 0.418827112964961 Functional Loss - NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16770217 chr1:16770219 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_90356 0 0 1 0 2 NECAP2 chr1:16770227 5'GT 16770227 Upstream 9bp
chr12 93147990 93147990 1 + C T STAD 93147987 + 93147967 93148007 41 CTGGAAAAGGAGCATGGACTCTGCTGAGAAAATCATGATCT CTGGAAAAGGAGCATGGACTCTGTTGAGAAAATCATGATCT < 41bp 0.73437155455752 0.524961178868459 0.18845332 0.10875249 prediction 0.418820751378121 Functional Loss - PLEKHG7 ENSG00000187510 CDS Human protein_coding chr12:93147987 chr12:93147990 nonsynonymous SNV 0.663 0 24 hm5C_associated_SNPs_90360 0 0 0 0 1 PLEKHG7 chr12:93148040 5'GT 93148040 Upstream 51bp
chr22 39380220 39380220 1 + G T HNSC 39380217 + 39380197 39380237 41 CTCAAATCTCCTTTGGGACACAGGGGTCTTTCGAGGCCAGG CTCAAATCTCCTTTGGGACACAGTGGTCTTTCGAGGCCAGG < 41bp 0.709408645790952 0.311949234131039 0.8688055 0.040923804 prediction 0.418817291581905 Functional Loss - APOBEC3B ENSG00000179750 CDS Human protein_coding chr22:39380217 chr22:39380220 nonsynonymous SNV 0.050 3 24 hm5C_associated_SNPs_90361 0 0 0 0 1 APOBEC3B chr22:39380236 5'GT 39380236 Upstream 17bp
chr18 2656197 2656197 1 + G T LUAD 2656194 + 2656174 2656214 41 CGCGAAAAGGAGTCCGAGCTCGGGGACCGGCCTCTGCAGGT CGCGAAAAGGAGTCCGAGCTCGGTGACCGGCCTCTGCAGGT < 41bp 0.907134478597207 0.69773017652562 0.9282657 0.5778104 prediction 0.418808604143173 Functional Loss - SMCHD1 ENSG00000101596 CDS Human protein_coding chr18:2656194 chr18:2656197 synonymous SNV . 0 24 hm5C_associated_SNPs_90364 0 0 1 0 1 SMCHD1 chr18:2656260 5'GT 2656260 Upstream 64bp
chr4 70155457 70155457 1 + G A SKCM 70155454 + 70155434 70155474 41 CGGCTGTATAAGTGGATACCCCAGAATGACCTTCTAGGTAA CGGCTGTATAAGTGGATACCCCAAAATGACCTTCTAGGTAA < 41bp 0.709401395864931 0.481310190510886 0.28394234 0.13183224 prediction 0.418802791729862 Functional Loss - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70155454 chr4:70155457 synonymous SNV . 0 24 hm5C_associated_SNPs_90367 0 0 0 0 2 UGT2B28 chr4:70155383 3'AG 70155383 Downstream 75bp
chr4 70155457 70155457 1 + G A SKCM 70155454 + 70155434 70155474 41 CGGCTGTATAAGTGGATACCCCAGAATGACCTTCTAGGTAA CGGCTGTATAAGTGGATACCCCAAAATGACCTTCTAGGTAA < 41bp 0.709401395864931 0.481310190510886 0.28394234 0.13183224 prediction 0.418802791729862 Functional Loss - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70155454 chr4:70155457 synonymous SNV . 0 24 hm5C_associated_SNPs_90367 0 0 0 0 2 UGT2B28 chr4:70155470 5'GT 70155470 Upstream 14bp
chr12 60169185 60169185 1 + G A SKCM 60169182 + 60169162 60169202 41 CATGGACCTCGTGGGTGCACCAAGATTTTCCAGTGCCGTCG CATGGACCTCGTGGGTGCACCAAAATTTTCCAGTGCCGTCG < 41bp 0.803466959393512 0.594066150771879 0.30498534 0.35664165 prediction 0.418801617243266 Functional Loss - SLC16A7 ENSG00000118596 CDS Human protein_coding chr12:60169182 chr12:60169185 nonsynonymous SNV 0.100 2 24 hm5C_associated_SNPs_90368 0 0 0 0 1 SLC16A7 chr12:60169256 5'GT 60169256 Upstream 72bp
chr3 53222845 53222845 1 + T C COAD 53222844 + 53222824 53222864 41 GAGAGCCGGGCCAGCACCTTCTGCGGCACCCCTGACTATAT GAGAGCCGGGCCAGCACCTTCCGCGGCACCCCTGACTATAT < 41bp 0.709399518215987 0.433216635377918 0.39222574 0.8662164 prediction 0.418799036431974 Functional Loss - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53222844 chr3:53222845 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_90369 0 0 0 0 1 PRKCD chr3:53222874 5'GT 53222874 Upstream 30bp
chr3 1418703 1418703 1 + C T BLCA 1418701 + 1418681 1418721 41 ATTTTTAGTCCCTGTTGTGGCACCAGTAAACATCCATGGAG ATTTTTAGTCCCTGTTGTGGCATCAGTAAACATCCATGGAG < 41bp 0.709395476108394 0.422796757527425 0.3346826 0.19653401 prediction 0.418790952216789 Functional Loss - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1418701 chr3:1418703 nonsynonymous SNV 0.973 4 23 hm5C_associated_SNPs_90374 0 0 0 0 2 CNTN6 chr3:1418689 3'AG 1418689 Downstream 15bp
chr3 1418703 1418703 1 + C T BLCA 1418701 + 1418681 1418721 41 ATTTTTAGTCCCTGTTGTGGCACCAGTAAACATCCATGGAG ATTTTTAGTCCCTGTTGTGGCATCAGTAAACATCCATGGAG < 41bp 0.709395476108394 0.422796757527425 0.3346826 0.19653401 prediction 0.418790952216789 Functional Loss - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1418701 chr3:1418703 nonsynonymous SNV 0.973 4 23 hm5C_associated_SNPs_90374 0 0 0 0 2 CNTN6 chr3:1418759 5'GT 1418759 Upstream 57bp
chr9 136516866 136516866 1 + G A SKCM 136516863 + 136516843 136516883 41 GACGGCCGGGAGTGGGAGATCGTGAACCAGGACAATCACTA GACGGCCGGGAGTGGGAGATCGTAAACCAGGACAATCACTA < 41bp 0.80475729399291 0.59536286758015 0.83733857 0.73998517 prediction 0.418788852825519 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136516863 chr9:136516866 synonymous SNV . 0 24 hm5C_associated_SNPs_90375 0 0 0 0 1 DBH chr9:136516899 5'GT 136516899 Upstream 34bp
chr16 58542880 58542880 1 + C T SKCM 58542877 + 58542857 58542897 41 TGTCCTCAGGTGGAGTGCAACTCCAAACTGGACCCGACCAC TGTCCTCAGGTGGAGTGCAACTCTAAACTGGACCCGACCAC < 41bp 0.757922892872777 0.548538477415233 0.9635762 0.9371923 prediction 0.418768830915088 Functional Loss - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58542877 chr16:58542880 synonymous SNV . 0 24 hm5C_associated_SNPs_90378 0 0 1 0 2 NDRG4 chr16:58542866 3'AG 58542866 Downstream 15bp
chr16 58542880 58542880 1 + C T SKCM 58542877 + 58542857 58542897 41 TGTCCTCAGGTGGAGTGCAACTCCAAACTGGACCCGACCAC TGTCCTCAGGTGGAGTGCAACTCTAAACTGGACCCGACCAC < 41bp 0.757922892872777 0.548538477415233 0.9635762 0.9371923 prediction 0.418768830915088 Functional Loss - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58542877 chr16:58542880 synonymous SNV . 0 24 hm5C_associated_SNPs_90378 0 0 1 0 2 NDRG4 chr16:58542913 5'GT 58542913 Upstream 34bp
chr10 105203756 105203756 1 + C T UCEC 105203753 + 105203733 105203773 41 TCAAATACGGCGCCTTCCTTCTGCGGAGGAGCCAGGCTGCA TCAAATACGGCGCCTTCCTTCTGTGGAGGAGCCAGGCTGCA < 41bp 0.738539228752177 0.529155207812222 0.419398 0.50085014 prediction 0.41876804187991 Functional Loss - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105203753 chr10:105203756 nonsynonymous SNV 0.938 2 24 hm5C_associated_SNPs_90379 0 0 1 0 1 PDCD11 chr10:105203672 3'AG 105203672 Downstream 85bp
chr3 42229618 42229618 1 + G A BLCA 42229615 + 42229595 42229635 41 GCGCTGCGGAGGAGAGTGAGCCCGAGTCCGTTTGCTCAACC GCGCTGCGGAGGAGAGTGAGCCCAAGTCCGTTTGCTCAACC < 41bp 0.709383163198811 0.476285673468498 0.7409887 0.3812493 prediction 0.418766326397623 Functional Loss - TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42229615 chr3:42229618 nonsynonymous SNV 0.987 3 24 hm5C_associated_SNPs_90380 0 0 1 0 2 TRAK1 chr3:42229537 3'AG 42229537 Downstream 82bp
chr3 42229618 42229618 1 + G A BLCA 42229615 + 42229595 42229635 41 GCGCTGCGGAGGAGAGTGAGCCCGAGTCCGTTTGCTCAACC GCGCTGCGGAGGAGAGTGAGCCCAAGTCCGTTTGCTCAACC < 41bp 0.709383163198811 0.476285673468498 0.7409887 0.3812493 prediction 0.418766326397623 Functional Loss - TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42229615 chr3:42229618 nonsynonymous SNV 0.987 3 24 hm5C_associated_SNPs_90380 0 0 1 0 2 TRAK1 chr3:42229637 5'GT 42229637 Upstream 20bp
chr14 93119350 93119350 1 + G A BLCA 93119347 + 93119327 93119367 41 CGCACCATGATGACCCAGCTCAAGAGCTACCTGCTGCAGAG CGCACCATGATGACCCAGCTCAAAAGCTACCTGCTGCAGAG < 41bp 0.819509837632652 0.610127263080391 0.5029862 0.13156855 prediction 0.41876514910452 Functional Loss - RIN3 ENSG00000100599 CDS Human protein_coding chr14:93119347 chr14:93119350 synonymous SNV . 0 24 hm5C_associated_SNPs_90381 0 0 0 0 1 RIN3 chr14:93119420 5'GT 93119420 Upstream 71bp
chr12 56427018 56427018 1 + C T SARC 56427015 + 56426995 56427035 41 AGATGGTGCCAGACTCCATGCTGCACTCATCCTCTGAGCGG AGATGGTGCCAGACTCCATGCTGTACTCATCCTCTGAGCGG < 41bp 0.709378608094097 0.488312403438706 0.0783056 0.09028551 prediction 0.418757216188195 Functional Loss - IKZF4 ENSG00000123411 CDS Human protein_coding chr12:56427015 chr12:56427018 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_90384 0 0 0 0 2 IKZF4 chr12:56426974 3'AG 56426974 Downstream 45bp
chr12 56427018 56427018 1 + C T SARC 56427015 + 56426995 56427035 41 AGATGGTGCCAGACTCCATGCTGCACTCATCCTCTGAGCGG AGATGGTGCCAGACTCCATGCTGTACTCATCCTCTGAGCGG < 41bp 0.709378608094097 0.488312403438706 0.0783056 0.09028551 prediction 0.418757216188195 Functional Loss - IKZF4 ENSG00000123411 CDS Human protein_coding chr12:56427015 chr12:56427018 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_90384 0 0 0 0 2 IKZF4 chr12:56427105 5'GT 56427105 Upstream 88bp
chr7 76131662 76131662 1 + C T STAD 76131659 + 76131639 76131679 41 CTGTCCACAGCGTCTGGATACAGCGATGTGACTGACAGCAA CTGTCCACAGCGTCTGGATACAGTGATGTGACTGACAGCAA < 41bp 0.736468460255 0.52709075890935 0.15210742 0.22798753 prediction 0.418755402691301 Functional Loss - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76131659 chr7:76131662 synonymous SNV . 0 24 hm5C_associated_SNPs_90385 0 0 0 0 1 DTX2 chr7:76131615 3'AG 76131615 Downstream 48bp
chr17 15645284 15645284 1 + C T UCEC 15645282 + 15645262 15645302 41 ACAGCCCAAATACTGCCTGGCTCGAGAGGCTCCTATCGCAC ACAGCCCAAATACTGCCTGGCTTGAGAGGCTCCTATCGCAC < 41bp 0.857410566149277 0.648034387446847 0.040551186 0.04007405 prediction 0.418752357404859 Functional Loss - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15645282 chr17:15645284 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_90388 0 0 0 0 2 TBC1D26 chr17:15645256 3'AG 15645256 Downstream 29bp
chr17 15645284 15645284 1 + C T UCEC 15645282 + 15645262 15645302 41 ACAGCCCAAATACTGCCTGGCTCGAGAGGCTCCTATCGCAC ACAGCCCAAATACTGCCTGGCTTGAGAGGCTCCTATCGCAC < 41bp 0.857410566149277 0.648034387446847 0.040551186 0.04007405 prediction 0.418752357404859 Functional Loss - TBC1D26 ENSG00000214946 CDS Human antisense chr17:15645282 chr17:15645284 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_90388 0 0 0 0 2 TBC1D26 chr17:15645350 5'GT 15645350 Upstream 67bp
chr1 163307845 163307845 1 + C T rs34426463 163307842 + 163307822 163307862 41 GACAAAATGCAACAGTTAAACGCCGCACACCAGGAGGCATT GACAAAATGCAACAGTTAAACGCTGCACACCAGGAGGCATT < 41bp 0.757412406514442 0.548036598502488 0.080640614 0.0623464 prediction 0.418751616023908 Functional Loss - NUF2 ENSG00000143228 CDS Human protein_coding chr1:163307842 chr1:163307845 synonymous SNV . 0 24 hm5C_associated_SNPs_90390 0 0 1 0 2 NUF2 chr1:163307810 3'AG 163307810 Downstream 36bp
chr1 163307845 163307845 1 + C T rs34426463 163307842 + 163307822 163307862 41 GACAAAATGCAACAGTTAAACGCCGCACACCAGGAGGCATT GACAAAATGCAACAGTTAAACGCTGCACACCAGGAGGCATT < 41bp 0.757412406514442 0.548036598502488 0.080640614 0.0623464 prediction 0.418751616023908 Functional Loss - NUF2 ENSG00000143228 CDS Human protein_coding chr1:163307842 chr1:163307845 synonymous SNV . 0 24 hm5C_associated_SNPs_90390 0 0 1 0 2 NUF2 chr1:163307883 5'GT 163307883 Upstream 39bp
chr7 99818563 99818563 1 + G A STAD 99818560 + 99818540 99818580 41 CCCCCGCGCAGGCACCAAGCCAGGCCTCCCAGGCTGCTCTT CCCCCGCGCAGGCACCAAGCCAGACCTCCCAGGCTGCTCTT < 41bp 0.709374642060982 0.457421849442028 0.87145686 0.3397935 prediction 0.418749284121964 Functional Loss - PVRIG ENSG00000213413 CDS Human protein_coding chr7:99818560 chr7:99818563 nonsynonymous SNV 0.020 1 24 hm5C_associated_SNPs_90391 0 0 0 0 1 PVRIG chr7:99818551 3'AG 99818551 Downstream 13bp
chr1 202266700 202266700 1 + G A SKCM 202266697 + 202266677 202266717 41 TCCGGACCCTGGGCAGACTGCAGGAACTGTAAGCGCCTCTT TCCGGACCCTGGGCAGACTGCAGAAACTGTAAGCGCCTCTT < 41bp 0.804703453334874 0.595333368714904 0.80869615 0.32721633 prediction 0.41874016923994 Functional Loss - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202266697 chr1:202266700 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_90399 0 0 0 0 2 LGR6 chr1:202266636 3'AG 202266636 Downstream 65bp
chr1 202266700 202266700 1 + G A SKCM 202266697 + 202266677 202266717 41 TCCGGACCCTGGGCAGACTGCAGGAACTGTAAGCGCCTCTT TCCGGACCCTGGGCAGACTGCAGAAACTGTAAGCGCCTCTT < 41bp 0.804703453334874 0.595333368714904 0.80869615 0.32721633 prediction 0.41874016923994 Functional Loss - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202266697 chr1:202266700 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_90399 0 0 0 0 2 LGR6 chr1:202266704 5'GT 202266704 Upstream 5bp
chr1 156108328 156108328 1 + C T STAD 156108326 + 156108306 156108346 41 CCCGCTGAGTACAACCTGCGCTCGCGCACCGTGCTGTGCGG CCCGCTGAGTACAACCTGCGCTTGCGCACCGTGCTGTGCGG < 41bp 0.746899009157032 0.537529544625961 0.23516083 0.23428199 prediction 0.418738929062143 Functional Loss - LMNA ENSG00000160789 CDS Human protein_coding chr1:156108326 chr1:156108328 nonsynonymous SNV 0.994 5 23 hm5C_associated_SNPs_90400 2 0 0 0 2 LMNA chr1:156108279 3'AG 156108279 Downstream 50bp
chr1 156108328 156108328 1 + C T STAD 156108326 + 156108306 156108346 41 CCCGCTGAGTACAACCTGCGCTCGCGCACCGTGCTGTGCGG CCCGCTGAGTACAACCTGCGCTTGCGCACCGTGCTGTGCGG < 41bp 0.746899009157032 0.537529544625961 0.23516083 0.23428199 prediction 0.418738929062143 Functional Loss - LMNA ENSG00000160789 CDS Human protein_coding chr1:156108326 chr1:156108328 nonsynonymous SNV 0.994 5 23 hm5C_associated_SNPs_90400 2 0 0 0 2 LMNA chr1:156108398 5'GT 156108398 Upstream 71bp
chr19 4954457 4954457 1 + G A UCEC 4954454 + 4954434 4954474 41 GAGCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAA GAGCAGCAGGAGGGGGGCTTCGCATCCCCCAGGACGGGCAA < 41bp 0.806351570501012 0.596982782323112 0.5454633 0.47377247 prediction 0.418737576355801 Functional Loss - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954454 chr19:4954457 . . 0 24 hm5C_associated_SNPs_90401 0 0 0 0 2 UHRF1 chr19:4954362 3'AG 4954362 Downstream 96bp
chr19 4954457 4954457 1 + G A UCEC 4954454 + 4954434 4954474 41 GAGCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAA GAGCAGCAGGAGGGGGGCTTCGCATCCCCCAGGACGGGCAA < 41bp 0.806351570501012 0.596982782323112 0.5454633 0.47377247 prediction 0.418737576355801 Functional Loss - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954454 chr19:4954457 . . 0 24 hm5C_associated_SNPs_90401 0 0 0 0 2 UHRF1 chr19:4954500 5'GT 4954500 Upstream 44bp
chr10 75529761 75529761 1 + G C GBM 75529757 + 75529737 75529777 41 GACCAATGTCTTCTTCTACCCTCGGCTCTTACCTTTGGTGC GACCAATGTCTTCTTCTACCCTCGCCTCTTACCTTTGGTGC < 41bp 0.709366201968536 0.423953544444882 0.12628949 0.20700261 prediction 0.418732403937073 Functional Loss - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529757 chr10:75529761 synonymous SNV . 0 25 hm5C_associated_SNPs_90402 0 0 1 0 1 SEC24C chr10:75529773 5'GT 75529773 Upstream 13bp
chr16 2131603 2131603 1 + C T CESC 2131600 + 2131580 2131620 41 GCTGCCGCCTCCGCAGGGAACACCAGCTGGCTGATGAGCCT GCTGCCGCCTCCGCAGGGAACACTAGCTGGCTGATGAGCCT < 41bp 0.709365114989658 0.489103079124542 0.0970051 0.107690424 prediction 0.418730229979317 Functional Loss - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2131600 chr16:2131603 synonymous SNV . 0 24 hm5C_associated_SNPs_90403 0 0 1 0 1 TSC2 chr16:2131596 3'AG 2131596 Downstream 8bp
chr9 35444873 35444873 1 + G A rs370905045 35444870 + 35444850 35444890 41 CATACATAGAGACAGCAGACCTGGATGGGTAAGTGTTCCCT CATACATAGAGACAGCAGACCTGAATGGGTAAGTGTTCCCT < 41bp 0.713438170634715 0.50407395088201 0.24798033 0.1251663 prediction 0.41872843950541 Functional Loss - ATP8B5P ENSG00000179766 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:35444870 chr9:35444873 . . 0 24 hm5C_associated_SNPs_90404 0 0 0 0 2 ATP8B5P chr9:35444807 3'AG 35444807 Downstream 67bp
chr9 35444873 35444873 1 + G A rs370905045 35444870 + 35444850 35444890 41 CATACATAGAGACAGCAGACCTGGATGGGTAAGTGTTCCCT CATACATAGAGACAGCAGACCTGAATGGGTAAGTGTTCCCT < 41bp 0.713438170634715 0.50407395088201 0.24798033 0.1251663 prediction 0.41872843950541 Functional Loss - ATP8B5P ENSG00000179766 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:35444870 chr9:35444873 . . 0 24 hm5C_associated_SNPs_90404 0 0 0 0 2 ATP8B5P chr9:35444877 5'GT 35444877 Upstream 5bp
chr17 79059488 79059488 1 + T C COAD 79059487 + 79059467 79059507 41 ACAACGAGCTGCTTACGCAGCTGGAGCAGAAGGTGGAGCTG ACAACGAGCTGCTTACGCAGCCGGAGCAGAAGGTGGAGCTG < 41bp 0.77193977346569 0.562576152569399 0.26817334 0.37123752 prediction 0.418727241792582 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79059487 chr17:79059488 nonsynonymous SNV 0.930 4 22 hm5C_associated_SNPs_90406 0 0 1 0 2 BAIAP2 chr17:79059454 3'AG 79059454 Downstream 35bp
chr17 79059488 79059488 1 + T C COAD 79059487 + 79059467 79059507 41 ACAACGAGCTGCTTACGCAGCTGGAGCAGAAGGTGGAGCTG ACAACGAGCTGCTTACGCAGCCGGAGCAGAAGGTGGAGCTG < 41bp 0.77193977346569 0.562576152569399 0.26817334 0.37123752 prediction 0.418727241792582 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79059487 chr17:79059488 nonsynonymous SNV 0.930 4 22 hm5C_associated_SNPs_90406 0 0 1 0 2 BAIAP2 chr17:79059515 5'GT 79059515 Upstream 28bp
chr20 31825663 31825663 1 + G A KIRP 31825660 + 31825640 31825680 41 CTTGAGTCCCACAGGTCTTGCAGGAAGCTTGACAAATGGTG CTTGAGTCCCACAGGTCTTGCAGAAAGCTTGACAAATGGTG < 41bp 0.8163033826118 0.606940771604878 0.35483655 0.08120707 prediction 0.418725222013844 Functional Loss - BPIFA1 ENSG00000198183 CDS Human protein_coding chr20:31825660 chr20:31825663 nonsynonymous SNV 0.012 0 24 hm5C_associated_SNPs_90407 0 0 0 0 1 BPIFA1 chr20:31825677 5'GT 31825677 Upstream 15bp
chr19 45540714 45540714 1 + G A STAD 45540711 + 45540691 45540731 41 GCCAGACCCTGACTTCTTCTCTGGCACCGTGTCCCTGCCCG GCCAGACCCTGACTTCTTCTCTGACACCGTGTCCCTGCCCG < 41bp 0.816936490723175 0.607574339669236 0.42468593 0.20163873 prediction 0.418724302107879 Functional Loss - RELB ENSG00000104856 CDS Human protein_coding chr19:45540711 chr19:45540714 nonsynonymous SNV 0.091 1 24 hm5C_associated_SNPs_90408 0 0 0 0 1 RELB chr19:45540663 3'AG 45540663 Downstream 52bp
chr10 115663332 115663332 1 + G A BLCA 115663329 + 115663309 115663349 41 AAAAAACTGTACAACATTAGCAGGAACTGGAGACACAAATA AAAAAACTGTACAACATTAGCAGAAACTGGAGACACAAATA < 41bp 0.726460084060391 0.517100933085284 0.6433002 0.39409277 prediction 0.418718301950215 Functional Loss - NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115663329 chr10:115663332 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_90410 0 0 1 3 1 NHLRC2 chr10:115663286 3'AG 115663286 Downstream 47bp
chr3 122869111 122869111 1 + G A READ 122869108 + 122869088 122869128 41 GCCCCCCCGCCCCCAGAGCCCACGTGGGAAGAGCAGCAGAC GCCCCCCCGCCCCCAGAGCCCACATGGGAAGAGCAGCAGAC < 41bp 0.808089664639793 0.598733499630486 0.09286451 0.15236923 prediction 0.418712330018616 Functional Loss - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122869108 chr3:122869111 synonymous SNV . 0 24 hm5C_associated_SNPs_90412 0 0 0 0 1 PDIA5 chr3:122869081 3'AG 122869081 Downstream 31bp
chr18 33234650 33234650 1 + G A LUSC 33234647 + 33234627 33234667 41 ATGAGAAAATTTGCATACTGCAAGGTGGTCCTAGCCACCTC ATGAGAAAATTTGCATACTGCAAAGTGGTCCTAGCCACCTC < 41bp 0.761062409868361 0.551708619814457 0.5712174 0.31670615 prediction 0.418707580107808 Functional Loss - GALNT1 ENSG00000141429 CDS Human protein_coding chr18:33234647 chr18:33234650 synonymous SNV . 0 24 hm5C_associated_SNPs_90414 0 0 1 0 1 GALNT1 chr18:33234623 3'AG 33234623 Downstream 28bp
chr19 1428991 1428991 1 + C T CESC 1428989 + 1428969 1429009 41 GTGGCAGCAAGGATATGGCCCGCAAGGTAAGGCTGATGCAG GTGGCAGCAAGGATATGGCCCGTAAGGTAAGGCTGATGCAG < 41bp 0.709353605351146 0.438297969481304 0.07025573 0.06688827 prediction 0.418707210702293 Functional Loss - DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1428989 chr19:1428991 stopgain 0.905 1 23 hm5C_associated_SNPs_90415 0 0 1 0 1 DAZAP1 chr19:1428994 5'GT 1428994 Upstream 4bp
chr20 31607447 31607447 1 + C T SKCM 31607444 + 31607424 31607464 41 CAAGGTGCGGCTGGGTGCCACACCTGTGGCCATGCTCCACA CAAGGTGCGGCTGGGTGCCACACTTGTGGCCATGCTCCACA < 41bp 0.715260534410627 0.50591593230164 0.13280523 0.093526036 prediction 0.418689204217975 Functional Loss - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31607444 chr20:31607447 nonsynonymous SNV 0.421 4 24 hm5C_associated_SNPs_90423 0 0 1 0 1 BPIFB2 chr20:31607386 3'AG 31607386 Downstream 62bp
chr3 128971792 128971792 1 + C T SKCM 128971790 + 128971770 128971810 41 GCAGAGGATGTCATCATTGTCACCAGCAGGCAAGTCATGGG GCAGAGGATGTCATCATTGTCATCAGCAGGCAAGTCATGGG < 41bp 0.860077792130398 0.650733289237604 0.14511451 0.12680694 prediction 0.418689005785588 Functional Loss - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128971790 chr3:128971792 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_90424 0 0 1 0 1 COPG1 chr3:128971719 3'AG 128971719 Downstream 74bp
chr1 20656862 20656862 1 + G A rs138366154 20656859 + 20656839 20656879 41 TGCTGGAGCTGGTGCGAAATCACGCCTTCTCCACCAGGTCG TGCTGGAGCTGGTGCGAAATCACACCTTCTCCACCAGGTCG < 41bp 0.709340633740584 0.444405112279063 0.76058674 0.06183216 prediction 0.418681267481168 Functional Loss - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20656859 chr1:20656862 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_90425 0 0 0 0 1 VWA5B1 chr1:20656875 5'GT 20656875 Upstream 14bp
chr10 133930628 133930628 1 + C T BLCA 133930626 + 133930606 133930646 41 ACCAGGAGCTGCGGCAGGTGCGCGAGCATGAGCAGCATAAG ACCAGGAGCTGCGGCAGGTGCGTGAGCATGAGCAGCATAAG < 41bp 0.859874520061713 0.650535073094594 0.85853285 0.66455626 prediction 0.418678893934237 Functional Loss - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133930626 chr10:133930628 synonymous SNV . 0 23 hm5C_associated_SNPs_90427 0 0 0 0 1 JAKMIP3 chr10:133930581 3'AG 133930581 Downstream 48bp
chrX 19369504 19369504 1 + G A BLCA 19369501 + 19369481 19369521 41 TCACCCGGGGCCTTTCCGTCCGAGAAATTCTCGCAGAGCTT TCACCCGGGGCCTTTCCGTCCGAAAAATTCTCGCAGAGCTT < 41bp 0.821375319667497 0.612036186259759 0.8061827 0.24332085 prediction 0.418678266815476 Functional Loss - PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19369501 chrX:19369504 nonsynonymous SNV 0.979 2 24 hm5C_associated_SNPs_90428 0 0 1 0 1 PDHA1 chrX:19369525 5'GT 19369525 Upstream 22bp
chr15 81572021 81572021 1 + G A UCEC 81572018 + 81571998 81572038 41 AGCTCCAGCACTTGTATCACCAAGGACAGCAGCTCCTTCGC AGCTCCAGCACTTGTATCACCAAAGACAGCAGCTCCTTCGC < 41bp 0.709339023897214 0.463741486663052 0.8743956 0.5482288 prediction 0.418678047794427 Functional Loss - IL16 ENSG00000172349 CDS Human protein_coding chr15:81572018 chr15:81572021 synonymous SNV . 0 24 hm5C_associated_SNPs_90429 0 0 0 0 1 IL16 chr15:81572115 5'GT 81572115 Upstream 95bp
chrX 30254048 30254048 1 + C T HNSC 30254046 + 30254026 30254066 41 CCTGACTACAGCCATCATGCCTCGGGGTCAGAAGAGTACGC CCTGACTACAGCCATCATGCCTTGGGGTCAGAAGAGTACGC < 41bp 0.840715923984285 0.631376913516405 0.3353402 0.24083725 prediction 0.418678020935761 Functional Loss - MAGEB3 ENSG00000198798 CDS Human protein_coding chrX:30254046 chrX:30254048 nonsynonymous SNV 0.182 3 23 hm5C_associated_SNPs_90430 0 0 0 0 1 MAGEB3 chrX:30253981 3'AG 30253981 Downstream 68bp
chr19 14581443 14581443 1 + G A SKCM 14581440 + 14581420 14581460 41 TTCGACAGCATCGTCAACGACGAGGTTCGCTACCCCCGCTT TTCGACAGCATCGTCAACGACGAAGTTCGCTACCCCCGCTT < 41bp 0.82952495866465 0.62018972169302 0.9106076 0.7709487 prediction 0.41867047394326 Functional Loss - PKN1 ENSG00000123143;ENSG00000123143 exonic;splicing Human protein_coding chr19:14581440 chr19:14581443 synonymous SNV . 0 24 hm5C_associated_SNPs_90433 0 0 1 0 1 PKN1 chr19:14581387 3'AG 14581387 Downstream 57bp
chr3 100057978 100057978 1 + G T UCEC 100057976 + 100057956 100057996 41 TCAGATTTCTTCCATCAAATCAGATAACGTCACTCGCGCTT TCAGATTTCTTCCATCAAATCATATAACGTCACTCGCGCTT < 41bp 0.709330427459047 0.358140000305129 0.40148816 0.102543384 prediction 0.418660854918094 Functional Loss - NIT2 ENSG00000114021 CDS Human protein_coding chr3:100057976 chr3:100057978 nonsynonymous SNV 0.774 3 23 hm5C_associated_SNPs_90436 0 0 1 0 2 NIT2 chr3:100057931 3'AG 100057931 Downstream 48bp
chr3 100057978 100057978 1 + G T UCEC 100057976 + 100057956 100057996 41 TCAGATTTCTTCCATCAAATCAGATAACGTCACTCGCGCTT TCAGATTTCTTCCATCAAATCATATAACGTCACTCGCGCTT < 41bp 0.709330427459047 0.358140000305129 0.40148816 0.102543384 prediction 0.418660854918094 Functional Loss - NIT2 ENSG00000114021 CDS Human protein_coding chr3:100057976 chr3:100057978 nonsynonymous SNV 0.774 3 23 hm5C_associated_SNPs_90436 0 0 1 0 2 NIT2 chr3:100058049 5'GT 100058049 Upstream 72bp
chr16 30777754 30777754 1 + A T LUSC 30777750 + 30777730 30777770 41 GTGCGGGAGACGGGGGAGTACCGCATGCTGCAGGCCCAATT GTGCGGGAGACGGGGGAGTACCGCTTGCTGCAGGCCCAATT < 41bp 0.709327897313849 0.375095011851589 0.90784585 0.9069271 prediction 0.418655794627698 Functional Loss - RNF40 ENSG00000103549 CDS Human protein_coding chr16:30777750 chr16:30777754 nonsynonymous SNV 0.989 0 25 hm5C_associated_SNPs_90439 0 0 1 0 1 RNF40 chr16:30777700 3'AG 30777700 Downstream 55bp
chr16 30964571 30964571 1 + C T BLCA 30964568 + 30964548 30964588 41 CCACCAGGCCTGCTGGTGGCCTTCAGTGCCTGCACCACCGT CCACCAGGCCTGCTGGTGGCCTTTAGTGCCTGCACCACCGT < 41bp 0.710029260865008 0.50070168894751 0.36625195 0.10526031 prediction 0.418655143834996 Functional Loss - ORAI3 ENSG00000175938 CDS Human protein_coding chr16:30964568 chr16:30964571 synonymous SNV . 0 24 hm5C_associated_SNPs_90440 0 0 0 0 1 ORAI3 chr16:30964506 3'AG 30964506 Downstream 66bp
chr12 57863310 57863310 1 + G T LUAD 57863308 + 57863288 57863328 41 AGACAGTGGTGTGGAAATGACTGGCAATGCAGGGGGCAGCA AGACAGTGGTGTGGAAATGACTTGCAATGCAGGGGGCAGCA < 41bp 0.709326775283557 0.35453039172798 0.077370405 0.049227923 prediction 0.418653550567113 Functional Loss - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57863308 chr12:57863310 nonsynonymous SNV 0.544 3 23 hm5C_associated_SNPs_90441 0 0 0 0 1 GLI1 chr12:57863214 3'AG 57863214 Downstream 97bp
chr19 3740612 3740612 1 + C T CESC 3740610 + 3740590 3740630 41 GTGGGAGTCGGGCCCGGCTCCTCCGCGGGCTCCAATGCTCG GTGGGAGTCGGGCCCGGCTCCTTCGCGGGCTCCAATGCTCG < 41bp 0.709326301358531 0.435033157581511 0.312756 0.25339347 prediction 0.418652602717062 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3740610 chr19:3740612 nonsynonymous SNV 0.016 2 23 hm5C_associated_SNPs_90442 0 0 0 0 1 TJP3 chr19:3740550 3'AG 3740550 Downstream 63bp
chr11 70228237 70228237 1 + G A ACC 70228234 + 70228214 70228254 41 AGGTTGGATTCTGCTACAGTCAGGACTTACTCCTGCTAAAG AGGTTGGATTCTGCTACAGTCAGAACTTACTCCTGCTAAAG < 41bp 0.709326019477842 0.477679749224139 0.9181161 0.7656294 prediction 0.418652038955684 Functional Loss - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70228234 chr11:70228237 synonymous SNV . 0 24 hm5C_associated_SNPs_90443 0 0 1 0 2 PPFIA1 chr11:70228194 3'AG 70228194 Downstream 44bp
chr11 70228237 70228237 1 + G A ACC 70228234 + 70228214 70228254 41 AGGTTGGATTCTGCTACAGTCAGGACTTACTCCTGCTAAAG AGGTTGGATTCTGCTACAGTCAGAACTTACTCCTGCTAAAG < 41bp 0.709326019477842 0.477679749224139 0.9181161 0.7656294 prediction 0.418652038955684 Functional Loss - PPFIA1 ENSG00000131626 CDS Human antisense chr11:70228234 chr11:70228237 synonymous SNV . 0 24 hm5C_associated_SNPs_90443 0 0 1 0 2 PPFIA1 chr11:70228264 5'GT 70228264 Upstream 28bp
chr2 162275558 162275558 1 + G A LUSC 162275555 + 162275535 162275575 41 GCCGTCACCGCCTACCAGAACACGGATGTAAGGAGACCTAG GCCGTCACCGCCTACCAGAACACAGATGTAAGGAGACCTAG < 41bp 0.813818969541947 0.604493065336033 0.37667796 0.19982937 prediction 0.418651808411829 Functional Loss - TBR1 ENSG00000136535 CDS Human protein_coding chr2:162275555 chr2:162275558 synonymous SNV . 0 24 hm5C_associated_SNPs_90444 0 0 0 0 1 TBR1 chr2:162275561 5'GT 162275561 Upstream 4bp
chr5 180659692 180659692 1 + T C ESCA 180659691 + 180659671 180659711 41 TCAGAGCTGGCAGCGGTGGCCTCGGAGTTTGGGCGACTGAC TCAGAGCTGGCAGCGGTGGCCCCGGAGTTTGGGCGACTGAC < 41bp 0.772649785645594 0.563331738191379 0.77264136 0.5074928 prediction 0.41863609490843 Functional Loss - TRIM41 ENSG00000146063 CDS Human protein_coding chr5:180659691 chr5:180659692 nonsynonymous SNV 0.914 3 22 hm5C_associated_SNPs_90447 0 0 1 0 1 TRIM41 chr5:180659659 3'AG 180659659 Downstream 34bp
chr7 49815659 49815659 1 + C T UCEC 49815656 + 49815636 49815676 41 TCGACACGAGCCAGTGCTGCCCGCAGTGCAAGGAGAGGAAG TCGACACGAGCCAGTGCTGCCCGTAGTGCAAGGAGAGGAAG < 41bp 0.709316026112382 0.496580463669861 0.1981127 0.21923235 prediction 0.418632052224765 Functional Loss - VWC2 ENSG00000188730 CDS Human protein_coding chr7:49815656 chr7:49815659 stopgain 1.000 1 24 hm5C_associated_SNPs_90448 0 0 0 0 1 VWC2 chr7:49815727 5'GT 49815727 Upstream 69bp
chrX 22231075 22231075 1 + G T LGG 22231072 + 22231052 22231092 41 CTTTTGGGGAACAGAATATCCTCGGTGAGTAAATGAGTACA CTTTTGGGGAACAGAATATCCTCTGTGAGTAAATGAGTACA < 41bp 0.709314109446002 0.333536339423376 0.038036972 0.0062396526 prediction 0.418628218892005 Functional Loss - PHEX ENSG00000102174 CDS Human protein_coding chrX:22231072 chrX:22231075 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_90450 0 0 0 0 2 PHEX chrX:22231021 3'AG 22231021 Downstream 55bp
chrX 22231075 22231075 1 + G T LGG 22231072 + 22231052 22231092 41 CTTTTGGGGAACAGAATATCCTCGGTGAGTAAATGAGTACA CTTTTGGGGAACAGAATATCCTCTGTGAGTAAATGAGTACA < 41bp 0.709314109446002 0.333536339423376 0.038036972 0.0062396526 prediction 0.418628218892005 Functional Loss - PHEX ENSG00000102174 CDS Human protein_coding chrX:22231072 chrX:22231075 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_90450 0 0 0 0 2 PHEX chrX:22231075 5'GT 22231075 Upstream 1bp
chr3 114018501 114018501 1 + T C LIHC 114018500 + 114018480 114018520 41 TTGGAGCCATGGCCGCGACGCTGGTGGTCATCTGCACAGCA TTGGAGCCATGGCCGCGACGCCGGTGGTCATCTGCACAGCA < 41bp 0.776177868842309 0.566863981047983 0.2084913 0.36676177 prediction 0.418627775588652 Functional Loss - TIGIT ENSG00000181847 CDS Human protein_coding chr3:114018500 chr3:114018501 nonsynonymous SNV 0.023 0 22 hm5C_associated_SNPs_90451 0 0 0 0 2 TIGIT chr3:114018444 3'AG 114018444 Downstream 58bp
chr3 114018501 114018501 1 + T C LIHC 114018500 + 114018480 114018520 41 TTGGAGCCATGGCCGCGACGCTGGTGGTCATCTGCACAGCA TTGGAGCCATGGCCGCGACGCCGGTGGTCATCTGCACAGCA < 41bp 0.776177868842309 0.566863981047983 0.2084913 0.36676177 prediction 0.418627775588652 Functional Loss - TIGIT ENSG00000181847 CDS Human protein_coding chr3:114018500 chr3:114018501 nonsynonymous SNV 0.023 0 22 hm5C_associated_SNPs_90451 0 0 0 0 2 TIGIT chr3:114018550 5'GT 114018550 Upstream 50bp
chr6 50683293 50683293 1 + G T LUAD 50683291 + 50683271 50683311 41 GACTCCTGCCAGGGCCCAGCCTGGGGCTGGCCGCCGCGGGA GACTCCTGCCAGGGCCCAGCCTTGGGCTGGCCGCCGCGGGA < 41bp 0.918300285173683 0.70899041041115 0.87712014 0.27314353 prediction 0.418619749525066 Functional Loss - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50683291 chr6:50683293 synonymous SNV . 0 23 hm5C_associated_SNPs_90454 0 0 0 0 1 TFAP2D chr6:50683326 5'GT 50683326 Upstream 34bp
chr3 40570877 40570877 1 + C T UCEC 40570874 + 40570854 40570894 41 TCAATGGGCCAGCCTCGACCCTGCGCAGAGGGCCCTGTACG TCAATGGGCCAGCCTCGACCCTGTGCAGAGGGCCCTGTACG < 41bp 0.709307427485163 0.496791650130013 0.08076128 0.08692157 prediction 0.418614854970326 Functional Loss - ZNF621 ENSG00000172888 CDS Human protein_coding chr3:40570874 chr3:40570877 nonsynonymous SNV 0.643 0 24 hm5C_associated_SNPs_90456 0 0 1 0 2 ZNF621 chr3:40570810 3'AG 40570810 Downstream 68bp
chr3 40570877 40570877 1 + C T UCEC 40570874 + 40570854 40570894 41 TCAATGGGCCAGCCTCGACCCTGCGCAGAGGGCCCTGTACG TCAATGGGCCAGCCTCGACCCTGTGCAGAGGGCCCTGTACG < 41bp 0.709307427485163 0.496791650130013 0.08076128 0.08692157 prediction 0.418614854970326 Functional Loss - ZNF621 ENSG00000172888 CDS Human protein_coding chr3:40570874 chr3:40570877 nonsynonymous SNV 0.643 0 24 hm5C_associated_SNPs_90456 0 0 1 0 2 ZNF621 chr3:40570936 5'GT 40570936 Upstream 60bp
chr10 75550824 75550824 1 + G A CESC 75550821 + 75550801 75550841 41 GCCCTCTGAGGGGCCGTGAGCCAGAGGGCGTCTGGAACCTG GCCCTCTGAGGGGCCGTGAGCCAAAGGGCGTCTGGAACCTG < 41bp 0.806865313917881 0.597561886092563 0.7138973 0.43116236 prediction 0.418606855650637 Functional Loss - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75550821 chr10:75550824 nonsynonymous SNV 0.839 3 24 hm5C_associated_SNPs_90458 0 0 1 0 1 ZSWIM8 chr10:75550733 3'AG 75550733 Downstream 92bp
chr13 114286059 114286059 1 + G T LUAD 114286057 + 114286037 114286077 41 GACTCCTCACCTTGGTCTGCCGGGTGAGCACTTCCCTCTGG GACTCCTCACCTTGGTCTGCCGTGTGAGCACTTCCCTCTGG < 41bp 0.709302993376178 0.352495064329634 0.9230224 0.37072796 prediction 0.418605986752357 Functional Loss - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114286057 chr13:114286059 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_90459 0 0 1 0 1 TFDP1 chr13:114286059 5'GT 114286059 Upstream 1bp
chr16 78011528 78011528 1 + G A ESCA 78011525 + 78011505 78011545 41 CAGCACAGAGACCAGTGAAGCAGGGGAAGAGGAGGAGGACC CAGCACAGAGACCAGTGAAGCAGAGGAAGAGGAGGAGGACC < 41bp 0.755472939573716 0.5461737641749 0.9161378 0.901303 prediction 0.418598350797633 Functional Loss - VAT1L ENSG00000171724 CDS Human protein_coding chr16:78011525 chr16:78011528 nonsynonymous SNV 0.939 4 24 hm5C_associated_SNPs_90462 0 0 0 0 1 VAT1L chr16:78011494 3'AG 78011494 Downstream 35bp
chr14 21499195 21499195 1 + G A COAD 21499192 + 21499172 21499212 41 GCCAAGAACGCCCGAACCATCACGTTTCAACAGTTCAAAGA GCCAAGAACGCCCGAACCATCACATTTCAACAGTTCAAAGA < 41bp 0.776963540833592 0.567666071814716 0.05644998 0.016114771 prediction 0.418594938037752 Functional Loss - TPPP2 ENSG00000179636 CDS Human protein_coding chr14:21499192 chr14:21499195 synonymous SNV . 0 24 hm5C_associated_SNPs_90464 0 0 0 0 1 TPPP2 chr14:21499171 3'AG 21499171 Downstream 25bp
chr2 220045906 220045906 1 + C T LUSC 220045903 + 220045883 220045923 41 TGAAGGCAGAAGCCAATGCCCTGCATCACAAACACGACAAG TGAAGGCAGAAGCCAATGCCCTGTATCACAAACACGACAAG < 41bp 0.757374779472393 0.548080022657534 0.052756518 0.054202527 prediction 0.418589513629718 Functional Loss - RETREG2 ENSG00000144567 CDS Human protein_coding chr2:220045903 chr2:220045906 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_90466 0 0 0 0 1 RETREG2 chr2:220045927 5'GT 220045927 Upstream 22bp
chr1 179033190 179033190 1 + C T UCEC 179033187 + 179033167 179033207 41 ATGTGTGGCCTCTGCAGAAGCACCGTCACCCATGGGGCAGG ATGTGTGGCCTCTGCAGAAGCACTGTCACCCATGGGGCAGG < 41bp 0.768023724417849 0.558733272605577 0.08356595 0.090321034 prediction 0.418580903624542 Functional Loss - FAM20B ENSG00000116199 CDS Human protein_coding chr1:179033187 chr1:179033190 nonsynonymous SNV 0.979 5 24 hm5C_associated_SNPs_90469 0 0 1 0 1 FAM20B chr1:179033233 5'GT 179033233 Upstream 44bp
chr20 2843379 2843379 1 + G T LUAD 2843377 + 2843357 2843397 41 GTTGGCCTGGATGGCCGGGCCGGGGAGGGTGGGGCTGGGAG GTTGGCCTGGATGGCCGGGCCGTGGAGGGTGGGGCTGGGAG < 41bp 0.917305317802589 0.708017769394878 0.8970548 0.72002053 prediction 0.418575096815421 Functional Loss - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2843377 chr20:2843379 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_90471 0 0 0 0 1 VPS16 chr20:2843356 3'AG 2843356 Downstream 24bp
chr12 10332197 10332197 1 + G T rs2291481 10332194 + 10332174 10332214 41 ATGGGAGTCCGAGTTCATGTCGTGGCGGCCTCAGCCCTGCT ATGGGAGTCCGAGTTCATGTCGTTGCGGCCTCAGCCCTGCT < 41bp 0.709281655676104 0.321633234986701 0.8308102 0.12085301 prediction 0.418563311352207 Functional Loss - TMEM52B ENSG00000165685 CDS Human protein_coding chr12:10332194 chr12:10332197 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_90473 0 0 0 0 1 TMEM52B chr12:10332227 5'GT 10332227 Upstream 31bp
chr11 111808245 111808245 1 + G T UCEC 111808242 + 111808222 111808262 41 CAATGCTAGCCTGCCTGACCCGAGGGAACTTACTGGACGTC CAATGCTAGCCTGCCTGACCCGATGGAACTTACTGGACGTC < 41bp 0.709280558428068 0.316155653078151 0.9006264 0.23673245 prediction 0.418561116856135 Functional Loss - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111808242 chr11:111808245 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_90474 0 0 1 0 1 DIXDC1 chr11:111808283 5'GT 111808283 Upstream 39bp
chr10 74992753 74992753 1 + G A UCEC 74992750 + 74992730 74992770 41 GTCCAGTACCATCCTTTCAACTCGAAATTGGCCAAATCGAG GTCCAGTACCATCCTTTCAACTCAAAATTGGCCAAATCGAG < 41bp 0.793549290189683 0.584270727532358 0.84614944 0.091549516 prediction 0.41855712531465 Functional Loss - FAM149B1 ENSG00000138286 CDS Human protein_coding chr10:74992750 chr10:74992753 nonsynonymous SNV 0.981 3 24 hm5C_associated_SNPs_90475 0 0 0 0 1 FAM149B1 chr10:74992697 3'AG 74992697 Downstream 57bp
chr12 104474574 104474574 1 + C T CESC 104474572 + 104474552 104474592 41 TAAAGGGACAGTGCCACTTCCACGAAGCCTTCATACAGCCA TAAAGGGACAGTGCCACTTCCATGAAGCCTTCATACAGCCA < 41bp 0.709276898691101 0.410223993477083 0.20558521 0.12149036 prediction 0.418553797382201 Functional Loss - HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104474572 chr12:104474574 stopgain 1.000 1 23 hm5C_associated_SNPs_90476 0 0 0 0 2 HCFC2 chr12:104474524 3'AG 104474524 Downstream 51bp
chr12 104474574 104474574 1 + C T CESC 104474572 + 104474552 104474592 41 TAAAGGGACAGTGCCACTTCCACGAAGCCTTCATACAGCCA TAAAGGGACAGTGCCACTTCCATGAAGCCTTCATACAGCCA < 41bp 0.709276898691101 0.410223993477083 0.20558521 0.12149036 prediction 0.418553797382201 Functional Loss - HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104474572 chr12:104474574 stopgain 1.000 1 23 hm5C_associated_SNPs_90476 0 0 0 0 2 HCFC2 chr12:104474608 5'GT 104474608 Upstream 35bp
chr12 104474575 104474575 1 + G A ESCA 104474572 + 104474552 104474592 41 TAAAGGGACAGTGCCACTTCCACGAAGCCTTCATACAGCCA TAAAGGGACAGTGCCACTTCCACAAAGCCTTCATACAGCCA < 41bp 0.709276898691101 0.480251092261593 0.20558521 0.07222906 prediction 0.418553797382201 Functional Loss - HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104474572 chr12:104474575 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_90477 0 0 0 1 2 HCFC2 chr12:104474524 3'AG 104474524 Downstream 52bp
chr12 104474575 104474575 1 + G A ESCA 104474572 + 104474552 104474592 41 TAAAGGGACAGTGCCACTTCCACGAAGCCTTCATACAGCCA TAAAGGGACAGTGCCACTTCCACAAAGCCTTCATACAGCCA < 41bp 0.709276898691101 0.480251092261593 0.20558521 0.07222906 prediction 0.418553797382201 Functional Loss - HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104474572 chr12:104474575 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_90477 0 0 0 1 2 HCFC2 chr12:104474608 5'GT 104474608 Upstream 34bp
chr9 139802569 139802569 1 + G T LUSC 139802565 + 139802545 139802585 41 GCTCATGCTGACCGAATGTCCCGCGTGCAAAGGCCTGGTCC GCTCATGCTGACCGAATGTCCCGCTTGCAAAGGCCTGGTCC < 41bp 0.737507139262489 0.528230271865511 0.20434523 0.024742812 prediction 0.418553734793958 Functional Loss - TRAF2 ENSG00000127191 CDS Human protein_coding chr9:139802565 chr9:139802569 synonymous SNV . 0 25 hm5C_associated_SNPs_90478 0 0 1 0 1 TRAF2 chr9:139802522 3'AG 139802522 Downstream 48bp
chr19 30101339 30101339 1 + G A rs11556817 30101336 + 30101316 30101356 41 CCTTCAGGAGCACAGCGGGCCGAGGCCTTCGTGAGGGCCTT CCTTCAGGAGCACAGCGGGCCGAAGCCTTCGTGAGGGCCTT < 41bp 0.809377384952514 0.60010309812055 0.6910347 0.37886235 prediction 0.418548573663929 Functional Loss - POP4 ENSG00000105171 CDS Human protein_coding chr19:30101336 chr19:30101339 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_90479 0 0 1 0 1 POP4 chr19:30101316 3'AG 30101316 Downstream 24bp
chr3 102157422 102157422 1 + C T SKCM 102157419 + 102157399 102157439 41 GCTACAACTGTGATGCCAACCTCCACAGTAGATTTCCTGGT GCTACAACTGTGATGCCAACCTCTACAGTAGATTTCCTGGT < 41bp 0.76547160541048 0.556203681891104 0.93680584 0.8440311 prediction 0.418535847038753 Functional Loss - ZPLD1 ENSG00000170044 CDS Human protein_coding chr3:102157419 chr3:102157422 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_90482 0 0 0 0 2 ZPLD1 chr3:102157324 3'AG 102157324 Downstream 99bp
chr3 102157422 102157422 1 + C T SKCM 102157419 + 102157399 102157439 41 GCTACAACTGTGATGCCAACCTCCACAGTAGATTTCCTGGT GCTACAACTGTGATGCCAACCTCTACAGTAGATTTCCTGGT < 41bp 0.76547160541048 0.556203681891104 0.93680584 0.8440311 prediction 0.418535847038753 Functional Loss - ZPLD1 ENSG00000170044 CDS Human protein_coding chr3:102157419 chr3:102157422 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_90482 0 0 0 0 2 ZPLD1 chr3:102157437 5'GT 102157437 Upstream 16bp
chr17 41584454 41584454 1 + G T UCEC 41584450 + 41584430 41584470 41 ACAGATCACCCAGTACCTGGCGGAGGCAGGCTACACTTCCA ACAGATCACCCAGTACCTGGCGGATGCAGGCTACACTTCCA < 41bp 0.709267682300492 0.499378204290415 0.8942362 0.5952143 prediction 0.418535364600984 Functional Loss - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41584450 chr17:41584454 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_90483 0 0 0 0 1 DHX8 chr17:41584371 3'AG 41584371 Downstream 84bp
chr7 150020625 150020625 1 + G T rs534922901 150020621 + 150020601 150020641 41 CTTCCCAGCTTGGCCAGTGGCTCCGCAGGCTGCCGGCTCCA CTTCCCAGCTTGGCCAGTGGCTCCTCAGGCTGCCGGCTCCA < 41bp 0.72183214271387 0.512564667992255 0.20334089 0.16526109 prediction 0.41853494944323 Functional Loss - ACTR3C;LRRC61 ENSG00000106526 CDS Human protein_coding chr7:150020621 chr7:150020625 nonsynonymous SNV 0.073 2 25 hm5C_associated_SNPs_90484 0 0 1 0 1 ACTR3C;LRRC61 chr7:150020649 5'GT 150020649 Upstream 25bp
chr17 29298375 29298375 1 + G A rs541676031 29298372 + 29298352 29298392 41 CGCCGCACGCGAGATACAGGCGGGCTCCGACCCTGCCCACT CGCCGCACGCGAGATACAGGCGGACTCCGACCCTGCCCACT < 41bp 0.835293685974748 0.626026655597293 0.92725074 0.70154023 prediction 0.41853406075491 Functional Loss - RNF135 ENSG00000181481 CDS Human protein_coding chr17:29298372 chr17:29298375 nonsynonymous SNV 0.010 2 24 hm5C_associated_SNPs_90485 0 0 0 0 1 RNF135 chr17:29298463 5'GT 29298463 Upstream 89bp
chr19 14675889 14675889 1 + C T rs59273619 14675887 + 14675867 14675907 41 TTCTCTGACAGATCTGCCAGCTCGGCAACTTCTCCATCCAC TTCTCTGACAGATCTGCCAGCTTGGCAACTTCTCCATCCAC < 41bp 0.709264984869856 0.447199529351182 0.21853292 0.16888395 prediction 0.418529969739713 Functional Loss - TECR ENSG00000099797 CDS Human protein_coding chr19:14675887 chr19:14675889 synonymous SNV . 0 23 hm5C_associated_SNPs_90487 1 0 1 0 2 TECR chr19:14675878 3'AG 14675878 Downstream 12bp
chr19 14675889 14675889 1 + C T rs59273619 14675887 + 14675867 14675907 41 TTCTCTGACAGATCTGCCAGCTCGGCAACTTCTCCATCCAC TTCTCTGACAGATCTGCCAGCTTGGCAACTTCTCCATCCAC < 41bp 0.709264984869856 0.447199529351182 0.21853292 0.16888395 prediction 0.418529969739713 Functional Loss - TECR ENSG00000099797 CDS Human protein_coding chr19:14675887 chr19:14675889 synonymous SNV . 0 23 hm5C_associated_SNPs_90487 1 0 1 0 2 TECR chr19:14675935 5'GT 14675935 Upstream 47bp
chr7 30673401 30673401 1 + A C rs4593 30673400 + 30673380 30673420 41 CCTAGCCAATGGCAACATCACATGGGCTGATGTGGAGGCCA CCTAGCCAATGGCAACATCACCTGGGCTGATGTGGAGGCCA < 41bp 0.709264094858573 0.445427575299951 0.455 0.3165145 prediction 0.418528189717145 Functional Loss - GARS ENSG00000106105 CDS Human protein_coding chr7:30673400 chr7:30673401 synonymous SNV . 0 22 hm5C_associated_SNPs_90488 0 0 1 0 1 GARS chr7:30673351 3'AG 30673351 Downstream 51bp
chr17 43912050 43912050 1 + C T STAD 43912048 + 43912028 43912068 41 GGACAAGCACTCGATCCGTGCCCGAGTGGCCCGTGCCATGT GGACAAGCACTCGATCCGTGCCTGAGTGGCCCGTGCCATGT < 41bp 0.735745629015211 0.526482238733888 0.10095772 0.065099 prediction 0.418526780562646 Functional Loss - CRHR1;LINC02210-CRHR1 ENSG00000120088 CDS Human protein_coding chr17:43912048 chr17:43912050 stopgain 0.275 1 23 hm5C_associated_SNPs_90492 0 0 1 0 1 CRHR1;LINC02210-CRHR1 chr17:43911990 3'AG 43911990 Downstream 61bp
chr11 74022429 74022429 1 + C T rs7944333 74022427 + 74022407 74022447 41 AGTGTATCCCACTGAGGCCCCTCGGTCGCTCCCACTCGTCG AGTGTATCCCACTGAGGCCCCTTGGTCGCTCCCACTCGTCG < 41bp 0.7376144932383 0.52835172705636 0.17246214 0.0682621 prediction 0.418525532363879 Functional Loss - P4HA3-AS1 ENSG00000246211 ncRNA_exonic Human protein_coding chr11:74022427 chr11:74022429 . . 0 23 hm5C_associated_SNPs_90493 0 0 0 0 1 P4HA3 chr11:74022494 5'GT 74022494 Upstream 66bp
chr9 137007540 137007540 1 + G A KIRC 137007537 + 137007517 137007557 41 CCAGTCCAACCTTATTGTCTCAGGATCCGTAAGTGTGGCTG CCAGTCCAACCTTATTGTCTCAGAATCCGTAAGTGTGGCTG < 41bp 0.819539598135493 0.61027743272905 0.90767574 0.77826744 prediction 0.418524330812886 Functional Loss - WDR5 ENSG00000196363 CDS Human protein_coding chr9:137007537 chr9:137007540 nonsynonymous SNV 0.733 4 24 hm5C_associated_SNPs_90494 0 0 1 0 2 WDR5 chr9:137007455 3'AG 137007455 Downstream 86bp
chr9 137007540 137007540 1 + G A KIRC 137007537 + 137007517 137007557 41 CCAGTCCAACCTTATTGTCTCAGGATCCGTAAGTGTGGCTG CCAGTCCAACCTTATTGTCTCAGAATCCGTAAGTGTGGCTG < 41bp 0.819539598135493 0.61027743272905 0.90767574 0.77826744 prediction 0.418524330812886 Functional Loss - WDR5 ENSG00000196363 CDS Human protein_coding chr9:137007537 chr9:137007540 nonsynonymous SNV 0.733 4 24 hm5C_associated_SNPs_90494 0 0 1 0 2 WDR5 chr9:137007544 5'GT 137007544 Upstream 5bp
chrX 8433584 8433584 1 + G A COAD 8433581 + 8433561 8433601 41 TCTCAGCCGAGCCCCAGTGACCCGAAGAAGAAGGTGAGTGA TCTCAGCCGAGCCCCAGTGACCCAAAGAAGAAGGTGAGTGA < 41bp 0.80314795497458 0.593889439527929 0.19970608 0.16421157 prediction 0.418517030893302 Functional Loss - VCX3B ENSG00000205642 CDS Human protein_coding chrX:8433581 chrX:8433584 synonymous SNV . 0 24 hm5C_associated_SNPs_90496 0 0 0 0 1 VCX3B chrX:8433593 5'GT 8433593 Upstream 10bp
chr16 85839388 85839388 1 + G A UCEC 85839385 + 85839365 85839405 41 TTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGT TTTGCTGAGATGAACAGGGGCTCAAACGAGTGGAAGACGGT < 41bp 0.796880584352425 0.587622556298538 0.39128923 0.35279912 prediction 0.418516056107775 Functional Loss - COX4I1 ENSG00000131143 CDS Human protein_coding chr16:85839385 chr16:85839388 synonymous SNV . 0 24 hm5C_associated_SNPs_90498 0 0 1 0 2 COX4I1 chr16:85839339 3'AG 85839339 Downstream 50bp
chr16 85839388 85839388 1 + G A UCEC 85839385 + 85839365 85839405 41 TTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGT TTTGCTGAGATGAACAGGGGCTCAAACGAGTGGAAGACGGT < 41bp 0.796880584352425 0.587622556298538 0.39128923 0.35279912 prediction 0.418516056107775 Functional Loss - COX4I1 ENSG00000131143 CDS Human protein_coding chr16:85839385 chr16:85839388 synonymous SNV . 0 24 hm5C_associated_SNPs_90498 0 0 1 0 2 COX4I1 chr16:85839470 5'GT 85839470 Upstream 83bp
chrX 50031825 50031825 1 + G A SKCM 50031822 + 50031802 50031842 41 AGATATCTCCATCTTCACTTCAGGAGTCTCCATCTTCACTT AGATATCTCCATCTTCACTTCAGAAGTCTCCATCTTCACTT < 41bp 0.818988731845991 0.609738616073357 0.5209079 0.01700002 prediction 0.418500231545268 Functional Loss - CCNB3 ENSG00000147082 CDS Human protein_coding chrX:50031822 chrX:50031825 nonsynonymous SNV 0.940 0 24 hm5C_associated_SNPs_90501 0 0 0 0 2 CCNB3 chrX:50031780 3'AG 50031780 Downstream 46bp
chrX 50031825 50031825 1 + G A SKCM 50031822 + 50031802 50031842 41 AGATATCTCCATCTTCACTTCAGGAGTCTCCATCTTCACTT AGATATCTCCATCTTCACTTCAGAAGTCTCCATCTTCACTT < 41bp 0.818988731845991 0.609738616073357 0.5209079 0.01700002 prediction 0.418500231545268 Functional Loss - CCNB3 ENSG00000147082 CDS Human protein_coding chrX:50031822 chrX:50031825 nonsynonymous SNV 0.940 0 24 hm5C_associated_SNPs_90501 0 0 0 0 2 CCNB3 chrX:50031887 5'GT 50031887 Upstream 63bp
chr19 36394272 36394272 1 + T C rs33964243 36394271 + 36394251 36394291 41 AGTGGCTGCAGCTCAGACGACTCCAGGAGAGAGATCATCAC AGTGGCTGCAGCTCAGACGACCCCAGGAGAGAGATCATCAC < 41bp 0.846482808387168 0.637234299426616 0.91294515 0.12754866 prediction 0.418497017921103 Functional Loss - HCST ENSG00000126264 CDS Human protein_coding chr19:36394271 chr19:36394272 synonymous SNV . 0 22 hm5C_associated_SNPs_90502 0 0 0 0 2 HCST chr19:36394253 3'AG 36394253 Downstream 20bp
chr19 36394272 36394272 1 + T C rs33964243 36394271 + 36394251 36394291 41 AGTGGCTGCAGCTCAGACGACTCCAGGAGAGAGATCATCAC AGTGGCTGCAGCTCAGACGACCCCAGGAGAGAGATCATCAC < 41bp 0.846482808387168 0.637234299426616 0.91294515 0.12754866 prediction 0.418497017921103 Functional Loss - HCST ENSG00000126264 CDS Human protein_coding chr19:36394271 chr19:36394272 synonymous SNV . 0 22 hm5C_associated_SNPs_90502 0 0 0 0 2 HCST chr19:36394318 5'GT 36394318 Upstream 47bp
chr20 31627172 31627172 1 + A C STAD 31627168 + 31627148 31627188 41 TGTAGGTGGCTGTAGCTTATCCCAAGTCAAAGCCCTTGACG TGTAGGTGGCTGTAGCTTATCCCACGTCAAAGCCCTTGACG < 41bp 0.709246909493062 0.292210236647903 0.11533937 0.08564383 prediction 0.418493818986124 Functional Loss - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31627168 chr20:31627172 nonsynonymous SNV 0.069 2 25 hm5C_associated_SNPs_90504 0 0 0 0 1 BPIFB6 chr20:31627153 3'AG 31627153 Downstream 20bp
chr12 123459915 123459915 1 + C T rs372989803 123459913 + 123459893 123459933 41 TCCGAGGCGAGCAGCAGCTGCGCCGGGACTACGGCCCGGTG TCCGAGGCGAGCAGCAGCTGCGTCGGGACTACGGCCCGGTG < 41bp 0.709242228405699 0.472830808807225 0.8792852 0.7272962 prediction 0.418484456811397 Functional Loss - OGFOD2 ENSG00000111325 CDS Human protein_coding chr12:123459913 chr12:123459915 synonymous SNV . 0 23 hm5C_associated_SNPs_90507 0 0 0 0 1 OGFOD2 chr12:123459930 5'GT 123459930 Upstream 16bp
chr11 71507100 71507100 1 - C T UCEC 71507103 - 71507083 71507123 41 GCAGCCAGCCTCCGCAGGACCCCGACCAGCGACACGATGGC GCAGCCAGCCTCCGCAGGACCCCAACCAGCGACACGATGGC < 41bp 0.709230068385208 0.462118619592305 0.2706764 0.06719065 prediction 0.418460136770415 Functional Loss - FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71507103 chr11:71507100 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_90515 0 0 0 0 1 FAM86C1 chr11:71507171 3'AG 71507171 Downstream 72bp
chr6 160211636 160211636 1 + G A rs1128670 160211633 + 160211613 160211653 41 CTCAGCGATGGCGCTTCGGTCGCGGTTTTGGGGGTTGTTCT CTCAGCGATGGCGCTTCGGTCGCAGTTTTGGGGGTTGTTCT < 41bp 0.709229916616181 0.46293551050392 0.8564303 0.23170698 prediction 0.418459833232363 Functional Loss - MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160211633 chr6:160211636 nonsynonymous SNV 0.632 0 24 hm5C_associated_SNPs_90517 0 0 0 0 1 MRPL18 chr6:160211671 5'GT 160211671 Upstream 36bp
chr2 204154538 204154538 1 + C T SKCM 204154535 + 204154515 204154555 41 TGTTCGAACTGCCAAACTGACTCCAGTTTCTGCCCAGCTTC TGTTCGAACTGCCAAACTGACTCTAGTTTCTGCCCAGCTTC < 41bp 0.709229856512453 0.480707716920392 0.60274523 0.116871595 prediction 0.418459713024906 Functional Loss - CYP20A1 ENSG00000119004 CDS Human protein_coding chr2:204154535 chr2:204154538 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_90518 0 0 1 0 2 CYP20A1 chr2:204154488 3'AG 204154488 Downstream 51bp
chr2 204154538 204154538 1 + C T SKCM 204154535 + 204154515 204154555 41 TGTTCGAACTGCCAAACTGACTCCAGTTTCTGCCCAGCTTC TGTTCGAACTGCCAAACTGACTCTAGTTTCTGCCCAGCTTC < 41bp 0.709229856512453 0.480707716920392 0.60274523 0.116871595 prediction 0.418459713024906 Functional Loss - CYP20A1 ENSG00000119004 CDS Human protein_coding chr2:204154535 chr2:204154538 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_90518 0 0 1 0 2 CYP20A1 chr2:204154599 5'GT 204154599 Upstream 62bp
chr20 17434413 17434413 1 + C T LGG 17434410 + 17434390 17434430 41 CGCGGCGGCAAAGGCAGCATCTACGTGTGGGCCTCCGGGGA CGCGGCGGCAAAGGCAGCATCTATGTGTGGGCCTCCGGGGA < 41bp 0.745291050064885 0.536062955889413 0.3462022 0.38478744 prediction 0.418456188350944 Functional Loss - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17434410 chr20:17434413 synonymous SNV . 0 24 hm5C_associated_SNPs_90519 0 0 0 0 1 PCSK2 chr20:17434387 3'AG 17434387 Downstream 27bp
chr8 143816795 143816795 1 + G C HNSC 143816794 + 143816774 143816814 41 CAGCACTGGATCTCCTACAACGAGGCCAGCAGCCAGCTGCT CAGCACTGGATCTCCTACAACCAGGCCAGCAGCCAGCTGCT < 41bp 0.709220598109976 0.392115374405941 0.9098458 0.5524615 prediction 0.418441196219953 Functional Loss - THEM6 ENSG00000130193 CDS Human protein_coding chr8:143816794 chr8:143816795 nonsynonymous SNV 0.762 1 22 hm5C_associated_SNPs_90523 0 0 1 0 1 THEM6 chr8:143816744 3'AG 143816744 Downstream 52bp
chr21 36081026 36081026 1 + G A UCEC 36081023 + 36081003 36081043 41 CCAAGCTGGGGACCCAACATCCCGAATCTAATTCCGCAGGA CCAAGCTGGGGACCCAACATCCCAAATCTAATTCCGCAGGA < 41bp 0.709217733074408 0.45823300120208 0.33261406 0.21406472 prediction 0.418435466148816 Functional Loss - CLIC6 ENSG00000159212 CDS Human protein_coding chr21:36081023 chr21:36081026 nonsynonymous SNV 0.543 4 24 hm5C_associated_SNPs_90525 0 0 0 0 1 CLIC6 chr21:36080998 3'AG 36080998 Downstream 29bp
chrX 150869023 150869023 1 + G A UCEC 150869020 + 150869000 150869040 41 CAAATGCAGTCTACTCTGTCCGAGACCCCTCGCAGAGCTCA CAAATGCAGTCTACTCTGTCCGAAACCCCTCGCAGAGCTCA < 41bp 0.709215462543037 0.462236216690223 0.594986 0.2972064 prediction 0.418430925086074 Functional Loss - PRRG3 ENSG00000130032 CDS Human protein_coding chrX:150869020 chrX:150869023 nonsynonymous SNV 0.973 2 24 hm5C_associated_SNPs_90526 0 0 0 0 1 PRRG3 chrX:150868978 3'AG 150868978 Downstream 46bp
chrX 49173689 49173689 1 + G T THCA 49173687 + 49173667 49173707 41 GGAACAGGTTCACCCAAAGACTGGGTGTGAGTGTGGAGATG GGAACAGGTTCACCCAAAGACTTGGTGTGAGTGTGGAGATG < 41bp 0.911974207124371 0.702760450769063 0.058676004 0.01178962 prediction 0.418427512710617 Functional Loss - GAGE10 ENSG00000215274 CDS Human protein_coding chrX:49173687 chrX:49173689 nonsynonymous SNV 0.051 3 23 hm5C_associated_SNPs_90531 0 0 0 1 1 GAGE10 chrX:49173767 5'GT 49173767 Upstream 79bp
chr11 114168792 114168792 1 + C T STAD 114168789 + 114168769 114168809 41 CTGACTACTCAGACCAGAACCTGCAGGAGCTGGAGAAGTGG CTGACTACTCAGACCAGAACCTGTAGGAGCTGGAGAAGTGG < 41bp 0.795149924154906 0.585937251678243 0.15443775 0.1562765 prediction 0.418425344953326 Functional Loss - NNMT ENSG00000166741 CDS Human protein_coding chr11:114168789 chr11:114168792 stopgain 0.991 0 24 hm5C_associated_SNPs_90532 0 0 1 0 1 NNMT chr11:114168880 5'GT 114168880 Upstream 89bp
chr12 58166590 58166590 1 + C T rs34913183 58166588 + 58166568 58166608 41 GGGCTCTTTGCAGACTCTTACTCGGAGAAGAGCCAGTTCTG GGGCTCTTTGCAGACTCTTACTTGGAGAAGAGCCAGTTCTG < 41bp 0.846202542488843 0.636990870265982 0.85748124 0.80314875 prediction 0.418423344445721 Functional Loss - EEF1AKMT3 ENSG00000123427 CDS Human protein_coding chr12:58166588 chr12:58166590 nonsynonymous SNV 0.721 0 23 hm5C_associated_SNPs_90533 0 0 0 1 1 EEF1AKMT3 chr12:58166684 5'GT 58166684 Upstream 95bp
chr19 52938390 52938390 1 + T C LUAD 52938389 + 52938369 52938409 41 TTGGAGCAAAAGAGAGATCCCTGGACTCTGCAGAGTGAAGT TTGGAGCAAAAGAGAGATCCCCGGACTCTGCAGAGTGAAGT < 41bp 0.801646844701749 0.592436544885325 0.3029186 0.40795234 prediction 0.418420599632849 Functional Loss - ZNF534 ENSG00000198633 CDS Human protein_coding chr19:52938389 chr19:52938390 nonsynonymous SNV 0.071 0 22 hm5C_associated_SNPs_90535 0 0 0 0 2 ZNF534 chr19:52938334 3'AG 52938334 Downstream 57bp
chr19 52938390 52938390 1 + T C LUAD 52938389 + 52938369 52938409 41 TTGGAGCAAAAGAGAGATCCCTGGACTCTGCAGAGTGAAGT TTGGAGCAAAAGAGAGATCCCCGGACTCTGCAGAGTGAAGT < 41bp 0.801646844701749 0.592436544885325 0.3029186 0.40795234 prediction 0.418420599632849 Functional Loss - ZNF534 ENSG00000198633 CDS Human protein_coding chr19:52938389 chr19:52938390 nonsynonymous SNV 0.071 0 22 hm5C_associated_SNPs_90535 0 0 0 0 2 ZNF534 chr19:52938462 5'GT 52938462 Upstream 73bp
chr18 72247487 72247487 1 + C T LUSC 72247484 + 72247464 72247504 41 TGATGACACCCAGTATCTCGCAGCAAAAAGAGCGATCAGAA TGATGACACCCAGTATCTCGCAGTAAAAAGAGCGATCAGAA < 41bp 0.739399015774177 0.530192729203846 0.2566037 0.22185597 prediction 0.418412573140664 Functional Loss - CNDP1 ENSG00000150656 CDS Human protein_coding chr18:72247484 chr18:72247487 nonsynonymous SNV 0.298 3 24 hm5C_associated_SNPs_90539 0 0 0 0 1 CNDP1 chr18:72247507 5'GT 72247507 Upstream 21bp
chr11 64795103 64795103 1 + G C HNSC 64795102 + 64795082 64795122 41 TACACCGAGTACAAAGTAACCGCGCAGGTGAGGTGGGGCCC TACACCGAGTACAAAGTAACCCCGCAGGTGAGGTGGGGCCC < 41bp 0.709206141974884 0.392840331339207 0.1479916 0.1370286 prediction 0.418412283949769 Functional Loss - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64795102 chr11:64795103 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_90540 0 0 0 0 1 SNX15 chr11:64795108 5'GT 64795108 Upstream 6bp
chr12 4430444 4430444 1 + C T SKCM 4430442 + 4430422 4430462 41 ACGCGGCTCCGGGAACATGGCTCGCTTCGCTCTGACTGTTG ACGCGGCTCCGGGAACATGGCTTGCTTCGCTCTGACTGTTG < 41bp 0.709202837589774 0.472119609443055 0.041567296 0.03266108 prediction 0.418405675179547 Functional Loss - TIGAR ENSG00000078237 CDS Human protein_coding chr12:4430442 chr12:4430444 nonsynonymous SNV 0.851 3 23 hm5C_associated_SNPs_90541 0 0 1 0 1 TIGAR chr12:4430469 5'GT 4430469 Upstream 26bp
chr11 47603664 47603664 1 + C T UCEC 47603661 + 47603641 47603681 41 TTGTCTACAACCTGTTGTCTCTGCGCTTCAACTCACGGATC TTGTCTACAACCTGTTGTCTCTGTGCTTCAACTCACGGATC < 41bp 0.749866051764266 0.540663667012117 0.17888889 0.054540515 prediction 0.418404769504298 Functional Loss - NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47603661 chr11:47603664 nonsynonymous SNV 0.986 5 24 hm5C_associated_SNPs_90542 0 0 1 0 1 NDUFS3 chr11:47603640 3'AG 47603640 Downstream 25bp
chr7 127238539 127238539 1 + G A BLCA 127238536 + 127238516 127238556 41 GGGCACCCCCTGGAGTCTGACACGTTCTTCCGAATGCACTG GGGCACCCCCTGGAGTCTGACACATTCTTCCGAATGCACTG < 41bp 0.709199703396086 0.45514012416023 0.14113748 0.12929383 prediction 0.418399406792172 Functional Loss - FSCN3 ENSG00000106328 CDS Human protein_coding chr7:127238536 chr7:127238539 synonymous SNV . 0 24 hm5C_associated_SNPs_90544 0 0 0 0 1 FSCN3 chr7:127238489 3'AG 127238489 Downstream 51bp
chr7 127238538 127238538 1 + C T UCEC 127238536 + 127238516 127238556 41 GGGCACCCCCTGGAGTCTGACACGTTCTTCCGAATGCACTG GGGCACCCCCTGGAGTCTGACATGTTCTTCCGAATGCACTG < 41bp 0.709199703396086 0.428278811685511 0.14113748 0.19893911 prediction 0.418399406792172 Functional Loss - FSCN3 ENSG00000106328 CDS Human protein_coding chr7:127238536 chr7:127238538 nonsynonymous SNV 0.781 4 23 hm5C_associated_SNPs_90545 0 0 0 0 1 FSCN3 chr7:127238489 3'AG 127238489 Downstream 50bp
chr12 56618713 56618713 1 + G A SARC 56618710 + 56618690 56618730 41 TGAACCTTATCTTCATTGTGCTGGAGACAGGTGTCTATACT TGAACCTTATCTTCATTGTGCTGAAGACAGGTGTCTATACT < 41bp 0.803202347043912 0.594003537460126 0.20648605 0.08383775 prediction 0.418397619167571 Functional Loss - NABP2 ENSG00000139579 CDS Human protein_coding chr12:56618710 chr12:56618713 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_90546 0 0 1 0 2 NABP2 chr12:56618618 3'AG 56618618 Downstream 96bp
chr12 56618713 56618713 1 + G A SARC 56618710 + 56618690 56618730 41 TGAACCTTATCTTCATTGTGCTGGAGACAGGTGTCTATACT TGAACCTTATCTTCATTGTGCTGAAGACAGGTGTCTATACT < 41bp 0.803202347043912 0.594003537460126 0.20648605 0.08383775 prediction 0.418397619167571 Functional Loss - NABP2 ENSG00000139579 CDS Human protein_coding chr12:56618710 chr12:56618713 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_90546 0 0 1 0 2 NABP2 chr12:56618719 5'GT 56618719 Upstream 7bp
chr5 75596704 75596704 1 + G A SKCM 75596701 + 75596681 75596721 41 GGGGACATTGGCAGTATTGCCAGGGAACATTGTGTCTGCTC GGGGACATTGGCAGTATTGCCAGAGAACATTGTGTCTGCTC < 41bp 0.789354245926143 0.580156507028385 0.89742196 0.8677323 prediction 0.418395477795515 Functional Loss - SV2C ENSG00000122012 CDS Human protein_coding chr5:75596701 chr5:75596704 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_90547 0 0 0 0 1 SV2C chr5:75596757 5'GT 75596757 Upstream 54bp
chr12 8926041 8926041 1 + C T UCEC 8926038 + 8926018 8926058 41 ATGAAAGATGACGGCTCCTTCTGCGTCTGTGAGGCCAATGC ATGAAAGATGACGGCTCCTTCTGTGTCTGTGAGGCCAATGC < 41bp 0.770556015399096 0.56136121230203 0.13900268 0.09834498 prediction 0.418389606194132 Functional Loss - RIMKLB ENSG00000166532 CDS Human protein_coding chr12:8926038 chr12:8926041 synonymous SNV . 0 24 hm5C_associated_SNPs_90549 0 0 1 2 1 RIMKLB chr12:8926062 5'GT 8926062 Upstream 22bp
chr4 184366153 184366153 1 + G A rs560149180 184366150 + 184366130 184366170 41 TGCCGACGCCGAGAGCGGGACCCGAAACCGGCAGCTGCAGC TGCCGACGCCGAGAGCGGGACCCAAAACCGGCAGCTGCAGC < 41bp 0.766660772714544 0.557467448733345 0.21249747 0.107073694 prediction 0.418386647962397 Functional Loss - CDKN2AIP ENSG00000168564 CDS Human protein_coding chr4:184366150 chr4:184366153 nonsynonymous SNV 0.007 1 24 hm5C_associated_SNPs_90550 0 0 0 0 1 CDKN2AIP chr4:184366222 5'GT 184366222 Upstream 70bp
chr6 26501899 26501899 1 + C T SKCM 26501896 + 26501876 26501916 41 CGAGCTGCCCTGTCGCCTGTCTCCGAACGCGAGCGCCGAGC CGAGCTGCCCTGTCGCCTGTCTCTGAACGCGAGCGCCGAGC < 41bp 0.723078309614753 0.513890507807803 0.92770135 0.24341029 prediction 0.4183756036139 Functional Loss - BTN1A1 ENSG00000124557 CDS Human protein_coding chr6:26501896 chr6:26501899 nonsynonymous SNV 0.017 3 24 hm5C_associated_SNPs_90551 0 0 0 0 1 BTN1A1 chr6:26501818 3'AG 26501818 Downstream 82bp
chr15 90142648 90142648 1 + G A UCEC 90142645 + 90142625 90142665 41 AATCATGTTGTATGCATGTGCTCGAAACATGATCTCAACCG AATCATGTTGTATGCATGTGCTCAAAACATGATCTCAACCG < 41bp 0.709178116633175 0.469715674020524 0.163382 0.04658428 prediction 0.418356233266349 Functional Loss - TICRR ENSG00000140534 CDS Human protein_coding chr15:90142645 chr15:90142648 nonsynonymous SNV 0.177 0 24 hm5C_associated_SNPs_90555 0 0 1 0 2 TICRR chr15:90142555 3'AG 90142555 Downstream 94bp
chr15 90142648 90142648 1 + G A UCEC 90142645 + 90142625 90142665 41 AATCATGTTGTATGCATGTGCTCGAAACATGATCTCAACCG AATCATGTTGTATGCATGTGCTCAAAACATGATCTCAACCG < 41bp 0.709178116633175 0.469715674020524 0.163382 0.04658428 prediction 0.418356233266349 Functional Loss - TICRR ENSG00000140534 CDS Human protein_coding chr15:90142645 chr15:90142648 nonsynonymous SNV 0.177 0 24 hm5C_associated_SNPs_90555 0 0 1 0 2 TICRR chr15:90142706 5'GT 90142706 Upstream 59bp
chrX 47747452 47747452 1 + C T UCEC 47747449 + 47747429 47747469 41 ACTTCAGTAGAGAGGAGTGGCAGCAACTGGACTCTACTCAA ACTTCAGTAGAGAGGAGTGGCAGTAACTGGACTCTACTCAA < 41bp 0.709176866191315 0.498949352219607 0.3859083 0.4604838 prediction 0.41835373238263 Functional Loss - ZNF81 ENSG00000197779 CDS Human protein_coding chrX:47747449 chrX:47747452 stopgain 0.202 0 24 hm5C_associated_SNPs_90556 0 0 1 0 2 ZNF81 chrX:47747398 3'AG 47747398 Downstream 55bp
chrX 47747452 47747452 1 + C T UCEC 47747449 + 47747429 47747469 41 ACTTCAGTAGAGAGGAGTGGCAGCAACTGGACTCTACTCAA ACTTCAGTAGAGAGGAGTGGCAGTAACTGGACTCTACTCAA < 41bp 0.709176866191315 0.498949352219607 0.3859083 0.4604838 prediction 0.41835373238263 Functional Loss - ZNF81 ENSG00000197779 CDS Human protein_coding chrX:47747449 chrX:47747452 stopgain 0.202 0 24 hm5C_associated_SNPs_90556 0 0 1 0 2 ZNF81 chrX:47747524 5'GT 47747524 Upstream 73bp
chr6 108499422 108499422 1 + T C LUSC 108499421 + 108499401 108499441 41 GCTAAGAGTGTGCCAGCCTTCTCCACGCTGTCTTTGCAAGA GCTAAGAGTGTGCCAGCCTTCCCCACGCTGTCTTTGCAAGA < 41bp 0.859778436466518 0.650607988835564 0.9273206 0.20079198 prediction 0.418340895261908 Functional Loss - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108499421 chr6:108499422 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_90559 0 0 0 0 1 NR2E1 chr6:108499445 5'GT 108499445 Upstream 24bp
chr20 44644923 44644923 1 + G A STAD 44644920 + 44644900 44644940 41 TTCTGCCAGGACCGCTTCTACTGGCGCGTGAGTTCCCGGAG TTCTGCCAGGACCGCTTCTACTGACGCGTGAGTTCCCGGAG < 41bp 0.811489218855862 0.602322861706339 0.35386038 0.1545963 prediction 0.418332714299046 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44644920 chr20:44644923 stopgain 0.979 0 24 hm5C_associated_SNPs_90561 0 0 0 0 1 MMP9 chr20:44644889 3'AG 44644889 Downstream 35bp
chr1 11775205 11775205 1 + T C LIHC 11775204 + 11775184 11775224 41 TGCGACCTGCGGGAGCATCTCTGCACACCCCACAACCGAGG TGCGACCTGCGGGAGCATCTCCGCACACCCCACAACCGAGG < 41bp 0.852639390376582 0.643473479758738 0.16088426 0.37063166 prediction 0.418331821235689 Functional Loss - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11775204 chr1:11775205 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_90562 0 0 0 0 2 DRAXIN chr1:11775176 3'AG 11775176 Downstream 30bp
chr1 11775205 11775205 1 + T C LIHC 11775204 + 11775184 11775224 41 TGCGACCTGCGGGAGCATCTCTGCACACCCCACAACCGAGG TGCGACCTGCGGGAGCATCTCCGCACACCCCACAACCGAGG < 41bp 0.852639390376582 0.643473479758738 0.16088426 0.37063166 prediction 0.418331821235689 Functional Loss - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11775204 chr1:11775205 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_90562 0 0 0 0 2 DRAXIN chr1:11775265 5'GT 11775265 Upstream 61bp
chr16 89180853 89180853 1 + A T rs560149696 89180849 + 89180829 89180869 41 CGGTATGGCATGACCGAGATCGGCATGGCTCTGTCCGGGCC CGGTATGGCATGACCGAGATCGGCTTGGCTCTGTCCGGGCC < 41bp 0.904140473073798 0.694975153144051 0.33483174 0.06116894 prediction 0.418330639859493 Functional Loss - ACSF3 ENSG00000176715 CDS Human protein_coding chr16:89180849 chr16:89180853 nonsynonymous SNV 0.973 4 25 hm5C_associated_SNPs_90563 0 0 1 0 1 ACSF3 chr16:89180895 5'GT 89180895 Upstream 43bp
chr19 4311846 4311846 1 + C T COAD 4311843 + 4311823 4311863 41 TTTCCGTCTTGGTCAGTGCCCAGCGCACCCGTGATCGACCT TTTCCGTCTTGGTCAGTGCCCAGTGCACCCGTGATCGACCT < 41bp 0.713908855226708 0.5047439654812 0.30162716 0.1174252 prediction 0.418329779491015 Functional Loss - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4311843 chr19:4311846 synonymous SNV . 0 24 hm5C_associated_SNPs_90565 0 0 0 0 1 FSD1 chr19:4311839 3'AG 4311839 Downstream 8bp
chr1 44303964 44303964 1 + A C UCEC 44303960 + 44303940 44303980 41 AAGCCTGGCTATGCTTCAGCCTTGATGACGGCCATCTTCCC AAGCCTGGCTATGCTTCAGCCTTGCTGACGGCCATCTTCCC < 41bp 0.709163206273983 0.342442430012116 0.20024195 0.19497842 prediction 0.418326412547967 Functional Loss - ST3GAL3 ENSG00000126091 CDS Human protein_coding chr1:44303960 chr1:44303964 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_90570 0 0 1 0 2 ST3GAL3 chr1:44303891 3'AG 44303891 Downstream 74bp
chr1 44303964 44303964 1 + A C UCEC 44303960 + 44303940 44303980 41 AAGCCTGGCTATGCTTCAGCCTTGATGACGGCCATCTTCCC AAGCCTGGCTATGCTTCAGCCTTGCTGACGGCCATCTTCCC < 41bp 0.709163206273983 0.342442430012116 0.20024195 0.19497842 prediction 0.418326412547967 Functional Loss - ST3GAL3 ENSG00000126091 CDS Human protein_coding chr1:44303960 chr1:44303964 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_90570 0 0 1 0 2 ST3GAL3 chr1:44303983 5'GT 44303983 Upstream 20bp
chr1 45973110 45973110 1 + C T SKCM 45973108 + 45973088 45973128 41 CTGGCCTTCCTGGTACTCAGCACGCCTGCCATGTTTGACCG CTGGCCTTCCTGGTACTCAGCATGCCTGCCATGTTTGACCG < 41bp 0.709163068525916 0.429186315886127 0.5336255 0.33626503 prediction 0.418326137051831 Functional Loss - MMACHC ENSG00000132763 CDS Human protein_coding chr1:45973108 chr1:45973110 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_90571 0 0 0 0 1 MMACHC chr1:45973028 3'AG 45973028 Downstream 83bp
chr1 55136582 55136582 1 + G T ESCA 55136578 + 55136558 55136598 41 CAGGCGATGCAGGAGAAGGACGAGGCCAAGGCTGAGACCAT CAGGCGATGCAGGAGAAGGACGAGTCCAAGGCTGAGACCAT < 41bp 0.721383484946261 0.512222894483795 0.5500043 0.31435138 prediction 0.418321180924932 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55136578 chr1:55136582 nonsynonymous SNV 0.641 0 25 hm5C_associated_SNPs_90576 0 0 0 0 1 MROH7 chr1:55136602 5'GT 55136602 Upstream 21bp
chr1 12164486 12164486 1 + G T ESCA 12164482 + 12164462 12164502 41 GCATGGAACTCCTCCCGTGTCTGCGAATGTCGACCCGGCAT GCATGGAACTCCTCCCGTGTCTGCTAATGTCGACCCGGCAT < 41bp 0.75000238841721 0.540842535850316 0.16200075 0.0872595 prediction 0.418319705133787 Functional Loss - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12164482 chr1:12164486 stopgain 0.177 0 25 hm5C_associated_SNPs_90578 0 0 0 0 1 TNFRSF8 chr1:12164436 3'AG 12164436 Downstream 51bp
chr17 1198915 1198915 1 + C T OV 1198913 + 1198893 1198933 41 GTGGCCGTGACCGTCAACTTCACAGGTGAGACCCAGCTCCT GTGGCCGTGACCGTCAACTTCATAGGTGAGACCCAGCTCCT < 41bp 0.709154139034197 0.451102863283681 0.34719667 0.41596985 prediction 0.418308278068394 Functional Loss - TUSC5 ENSG00000184811 CDS Human protein_coding chr17:1198913 chr17:1198915 nonsynonymous SNV 0.965 1 23 hm5C_associated_SNPs_90581 0 0 0 0 1 TUSC5 chr17:1198917 5'GT 1198917 Upstream 3bp
chr4 75858518 75858518 1 + G C rs75120017 75858514 + 75858494 75858534 41 TCCTTGCCGCCCGCCCCGGGCTGGGCACCAAATACCAGGCT TCCTTGCCGCCCGCCCCGGGCTGGCCACCAAATACCAGGCT < 41bp 0.744591897979004 0.535439427025392 0.14863488 0.12798834 prediction 0.418304941907223 Functional Loss - PARM1 ENSG00000169116 UTR5 Human protein_coding chr4:75858514 chr4:75858518 . . 0 25 hm5C_associated_SNPs_90583 0 0 0 0 1 PARM1 chr4:75858580 5'GT 75858580 Upstream 63bp
chr19 46706824 46706824 1 + G A rs191473310 46706821 + 46706801 46706841 41 CAAGTTCTTGTTGCAGGTAGCAGGGACCAGCTTGCAAGCTT CAAGTTCTTGTTGCAGGTAGCAGAGACCAGCTTGCAAGCTT < 41bp 0.709149939339393 0.482940259765591 0.93021226 0.90561736 prediction 0.418299878678787 Functional Loss - IGFL2-AS1 ENSG00000268460 ncRNA_exonic Human processed_transcript chr19:46706821 chr19:46706824 . . 0 24 hm5C_associated_SNPs_90585 0 0 0 0 1 IGFL2-AS1 chr19:46706913 5'GT 46706913 Upstream 90bp
chr2 219755016 219755016 1 + G T LUAD 219755014 + 219754994 219755034 41 AGCGCTTTTCTAAGGACTTTCTGGACTCCCGGGAGCCTCAC AGCGCTTTTCTAAGGACTTTCTTGACTCCCGGGAGCCTCAC < 41bp 0.912360584071082 0.703212422078933 0.41316274 0.16515869 prediction 0.418296323984298 Functional Loss - WNT10A ENSG00000135925 CDS Human protein_coding chr2:219755014 chr2:219755016 synonymous SNV . 0 23 hm5C_associated_SNPs_90587 0 0 0 0 1 WNT10A chr2:219755085 5'GT 219755085 Upstream 70bp
chr19 7705647 7705647 1 + G A SKCM 7705644 + 7705624 7705664 41 AGGCCCTGATCAAAGACTTCCAGGGGACCCCGACTTTCACC AGGCCCTGATCAAAGACTTCCAGAGGACCCCGACTTTCACC < 41bp 0.809241422518833 0.600102012817777 0.908695 0.67858845 prediction 0.418278819402112 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7705644 chr19:7705647 nonsynonymous SNV 0.044 1 24 hm5C_associated_SNPs_90594 0 0 0 0 4 STXBP2 chr19:7705584 3'AG 7705584 Downstream 64bp
chr19 7705647 7705647 1 + G A SKCM 7705644 + 7705624 7705664 41 AGGCCCTGATCAAAGACTTCCAGGGGACCCCGACTTTCACC AGGCCCTGATCAAAGACTTCCAGAGGACCCCGACTTTCACC < 41bp 0.809241422518833 0.600102012817777 0.908695 0.67858845 prediction 0.418278819402112 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7705644 chr19:7705647 nonsynonymous SNV 0.044 1 24 hm5C_associated_SNPs_90594 0 0 0 0 4 STXBP2 chr19:7705617 3'AG 7705617 Downstream 31bp
chr19 7705647 7705647 1 + G A SKCM 7705644 + 7705624 7705664 41 AGGCCCTGATCAAAGACTTCCAGGGGACCCCGACTTTCACC AGGCCCTGATCAAAGACTTCCAGAGGACCCCGACTTTCACC < 41bp 0.809241422518833 0.600102012817777 0.908695 0.67858845 prediction 0.418278819402112 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7705644 chr19:7705647 nonsynonymous SNV 0.044 1 24 hm5C_associated_SNPs_90594 0 0 0 0 4 STXBP2 chr19:7705626 3'AG 7705626 Downstream 22bp
chr19 7705647 7705647 1 + G A SKCM 7705644 + 7705624 7705664 41 AGGCCCTGATCAAAGACTTCCAGGGGACCCCGACTTTCACC AGGCCCTGATCAAAGACTTCCAGAGGACCCCGACTTTCACC < 41bp 0.809241422518833 0.600102012817777 0.908695 0.67858845 prediction 0.418278819402112 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7705644 chr19:7705647 nonsynonymous SNV 0.044 1 24 hm5C_associated_SNPs_90594 0 0 0 0 4 STXBP2 chr19:7705695 5'GT 7705695 Upstream 49bp
chr20 29960701 29960701 1 + T C rs140456274 29960700 + 29960680 29960720 41 TGCTGGAACAGATCAGGGCACTGCAGGAAACAATGCAAAGA TGCTGGAACAGATCAGGGCACCGCAGGAAACAATGCAAAGA < 41bp 0.794419475214912 0.585280767173827 0.29262117 0.36645764 prediction 0.41827741608217 Functional Loss - DEFB118 ENSG00000131068 CDS Human protein_coding chr20:29960700 chr20:29960701 nonsynonymous SNV 0.459 5 22 hm5C_associated_SNPs_90595 0 0 0 0 1 DEFB118 chr20:29960660 3'AG 29960660 Downstream 42bp
chr11 63057996 63057996 1 + G T HNSC 63057994 + 63057974 63058014 41 ACAGAACCCTGTGTGGATGGCTGGGTATATGATCAAAGCTA ACAGAACCCTGTGTGGATGGCTTGGTATATGATCAAAGCTA < 41bp 0.709135552700884 0.364775782396747 0.5148405 0.17873213 prediction 0.418271105401769 Functional Loss - SLC22A10 ENSG00000184999 CDS Human protein_coding chr11:63057994 chr11:63057996 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_90596 0 0 0 1 1 SLC22A10 chr11:63058039 5'GT 63058039 Upstream 44bp
chr8 10383157 10383157 1 + G A STAD 10383154 + 10383134 10383174 41 CACGGGAACTCAGCTCGGTCCACGGACTCCTCTCCCAGAGG CACGGGAACTCAGCTCGGTCCACAGACTCCTCTCCCAGAGG < 41bp 0.70913392819911 0.448537571292718 0.77179146 0.13812333 prediction 0.418267856398219 Functional Loss - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10383154 chr8:10383157 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_90597 0 0 0 0 1 PRSS55 chr8:10383249 5'GT 10383249 Upstream 93bp
chr2 1320117 1320117 1 + G T CESC 1320115 + 1320095 1320135 41 CTCGAGTAAAGCTGCTGTTTCAGAATCTGGACACCAAACAG CTCGAGTAAAGCTGCTGTTTCATAATCTGGACACCAAACAG < 41bp 0.709133371591462 0.378717017586184 0.5010816 0.15171486 prediction 0.418266743182925 Functional Loss - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1320115 chr2:1320117 nonsynonymous SNV 0.464 4 23 hm5C_associated_SNPs_90599 0 0 1 0 2 SNTG2 chr2:1320037 3'AG 1320037 Downstream 81bp
chr2 1320117 1320117 1 + G T CESC 1320115 + 1320095 1320135 41 CTCGAGTAAAGCTGCTGTTTCAGAATCTGGACACCAAACAG CTCGAGTAAAGCTGCTGTTTCATAATCTGGACACCAAACAG < 41bp 0.709133371591462 0.378717017586184 0.5010816 0.15171486 prediction 0.418266743182925 Functional Loss - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1320115 chr2:1320117 nonsynonymous SNV 0.464 4 23 hm5C_associated_SNPs_90599 0 0 1 0 2 SNTG2 chr2:1320147 5'GT 1320147 Upstream 31bp
chr7 44247738 44247738 1 + C T UCEC 44247736 + 44247716 44247756 41 TTTCACTCTTTCCTAGAACCCACGAGAAGCTGATCCCATGA TTTCACTCTTTCCTAGAACCCATGAGAAGCTGATCCCATGA < 41bp 0.872293514468072 0.66316076105937 0.027794719 0.009011388 prediction 0.418265506817404 Functional Loss - YKT6 ENSG00000106636 CDS Human protein_coding chr7:44247736 chr7:44247738 stopgain 0.997 1 23 hm5C_associated_SNPs_90600 0 0 1 0 2 YKT6 chr7:44247732 3'AG 44247732 Downstream 7bp
chr7 44247738 44247738 1 + C T UCEC 44247736 + 44247716 44247756 41 TTTCACTCTTTCCTAGAACCCACGAGAAGCTGATCCCATGA TTTCACTCTTTCCTAGAACCCATGAGAAGCTGATCCCATGA < 41bp 0.872293514468072 0.66316076105937 0.027794719 0.009011388 prediction 0.418265506817404 Functional Loss - YKT6 ENSG00000106636 CDS Human protein_coding chr7:44247736 chr7:44247738 stopgain 0.997 1 23 hm5C_associated_SNPs_90600 0 0 1 0 2 YKT6 chr7:44247797 5'GT 44247797 Upstream 60bp
chr5 54404191 54404191 1 + G A SKCM 54404188 + 54404168 54404208 41 TGGAATGAATATGGTTTGTGCTGGAAGCCTCCGAGGTGGAA TGGAATGAATATGGTTTGTGCTGAAAGCCTCCGAGGTGGAA < 41bp 0.781322395165245 0.572191286445305 0.08994523 0.0777967 prediction 0.418262217439879 Functional Loss - GZMA ENSG00000145649 CDS Human protein_coding chr5:54404188 chr5:54404191 nonsynonymous SNV 0.021 5 24 hm5C_associated_SNPs_90601 0 0 0 0 1 GZMA chr5:54404222 5'GT 54404222 Upstream 32bp
chr10 1149610 1149610 1 + C T STAD 1149607 + 1149587 1149627 41 GACCTCGATGGGGATGTGTCCAGCGACTGCCCCACCATCCG GACCTCGATGGGGATGTGTCCAGTGACTGCCCCACCATCCG < 41bp 0.711978232020426 0.502847526415068 0.82973313 0.5250437 prediction 0.418261411210716 Functional Loss - WDR37 ENSG00000047056 CDS Human protein_coding chr10:1149607 chr10:1149610 synonymous SNV . 0 24 hm5C_associated_SNPs_90602 0 0 0 0 2 WDR37 chr10:1149539 3'AG 1149539 Downstream 72bp
chr10 1149610 1149610 1 + C T STAD 1149607 + 1149587 1149627 41 GACCTCGATGGGGATGTGTCCAGCGACTGCCCCACCATCCG GACCTCGATGGGGATGTGTCCAGTGACTGCCCCACCATCCG < 41bp 0.711978232020426 0.502847526415068 0.82973313 0.5250437 prediction 0.418261411210716 Functional Loss - WDR37 ENSG00000047056 CDS Human protein_coding chr10:1149607 chr10:1149610 synonymous SNV . 0 24 hm5C_associated_SNPs_90602 0 0 0 0 2 WDR37 chr10:1149542 3'AG 1149542 Downstream 69bp
chr1 26515325 26515325 1 + C T OV 26515322 + 26515302 26515342 41 TGAGGCAGGGTGGCGTGTCCCTCCTAGGCCAGCCACAGCCC TGAGGCAGGGTGGCGTGTCCCTCTTAGGCCAGCCACAGCCC < 41bp 0.767267809948523 0.558138839433554 0.25540388 0.16603309 prediction 0.418257941029939 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26515322 chr1:26515325 synonymous SNV . 0 24 hm5C_associated_SNPs_90604 0 0 0 0 1 CNKSR1 chr1:26515263 3'AG 26515263 Downstream 63bp
chrX 10090717 10090717 1 + C T COAD 10090714 + 10090694 10090734 41 GAGAGGAGGGCACGCCGCATCTCCGCATGTCTGTCGGATTA GAGAGGAGGGCACGCCGCATCTCTGCATGTCTGTCGGATTA < 41bp 0.709124444419342 0.475016630509148 0.90685993 0.21708414 prediction 0.418248888838683 Functional Loss - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10090714 chrX:10090717 synonymous SNV . 0 24 hm5C_associated_SNPs_90608 0 0 0 0 2 WWC3 chrX:10090659 3'AG 10090659 Downstream 59bp
chrX 10090717 10090717 1 + C T COAD 10090714 + 10090694 10090734 41 GAGAGGAGGGCACGCCGCATCTCCGCATGTCTGTCGGATTA GAGAGGAGGGCACGCCGCATCTCTGCATGTCTGTCGGATTA < 41bp 0.709124444419342 0.475016630509148 0.90685993 0.21708414 prediction 0.418248888838683 Functional Loss - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10090714 chrX:10090717 synonymous SNV . 0 24 hm5C_associated_SNPs_90608 0 0 0 0 2 WWC3 chrX:10090779 5'GT 10090779 Upstream 63bp
chr11 64953792 64953792 1 + C T UCEC 64953789 + 64953769 64953809 41 AGGCGCTGGAGCGGGGCTCCCTGCTGGGCTGCTCCATAGAC AGGCGCTGGAGCGGGGCTCCCTGTTGGGCTGCTCCATAGAC < 41bp 0.731533298131321 0.52241440139821 0.11231285 0.0649246 prediction 0.418237793466223 Functional Loss - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64953789 chr11:64953792 synonymous SNV . 0 24 hm5C_associated_SNPs_90611 0 0 1 0 1 CAPN1 chr11:64953809 5'GT 64953809 Upstream 18bp
chr3 183910650 183910650 1 + C T SKCM 183910647 + 183910627 183910667 41 GTGGAGCAGCTGGACCTAAACGTCAGTGCTGTGGAACTGCT GTGGAGCAGCTGGACCTAAACGTTAGTGCTGTGGAACTGCT < 41bp 0.758545959685281 0.549427971544854 0.15196282 0.2832243 prediction 0.418235976280855 Functional Loss - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183910647 chr3:183910650 synonymous SNV . 0 24 hm5C_associated_SNPs_90612 0 0 1 0 2 ABCF3 chr3:183910593 3'AG 183910593 Downstream 58bp
chr3 183910650 183910650 1 + C T SKCM 183910647 + 183910627 183910667 41 GTGGAGCAGCTGGACCTAAACGTCAGTGCTGTGGAACTGCT GTGGAGCAGCTGGACCTAAACGTTAGTGCTGTGGAACTGCT < 41bp 0.758545959685281 0.549427971544854 0.15196282 0.2832243 prediction 0.418235976280855 Functional Loss - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183910647 chr3:183910650 synonymous SNV . 0 24 hm5C_associated_SNPs_90612 0 0 1 0 2 ABCF3 chr3:183910684 5'GT 183910684 Upstream 35bp
chr9 130482669 130482669 1 + C T SKCM 130482666 + 130482646 130482686 41 GGGCCAGACTCTACAACTTTCTCCAGAAGGTACAGTGGGGA GGGCCAGACTCTACAACTTTCTCTAGAAGGTACAGTGGGGA < 41bp 0.737311291471226 0.528193952179052 0.92353165 0.5554638 prediction 0.418234678584348 Functional Loss - TTC16 ENSG00000167094 CDS Human protein_coding chr9:130482666 chr9:130482669 stopgain 0.737 0 24 hm5C_associated_SNPs_90613 0 0 0 0 1 TTC16 chr9:130482674 5'GT 130482674 Upstream 6bp
chr3 119529005 119529005 1 + C T SKCM 119529002 + 119528982 119529022 41 GGCGACAGTGCCAGGCCTGCCGCCTGCGCAAGTGCCTGGAG GGCGACAGTGCCAGGCCTGCCGCTTGCGCAAGTGCCTGGAG < 41bp 0.709117301367003 0.493280051084566 0.49287948 0.40112534 prediction 0.418234602734005 Functional Loss - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119529002 chr3:119529005 synonymous SNV . 0 24 hm5C_associated_SNPs_90614 0 0 1 0 1 NR1I2 chr3:119528908 3'AG 119528908 Downstream 98bp
chr16 29124379 29124379 1 + G A SKCM 29124376 + 29124356 29124396 41 TGTCACTGATTTCAGTTGTTCTGGAGAATCATGTAGCGACA TGTCACTGATTTCAGTTGTTCTGAAGAATCATGTAGCGACA < 41bp 0.790960323183948 0.581845095157151 0.38029966 0.18565178 prediction 0.418230456053595 Functional Loss - RRN3P2 ENSG00000103472 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:29124376 chr16:29124379 . . 0 24 hm5C_associated_SNPs_90615 0 0 0 2 2 RRN3P2 chr16:29124371 3'AG 29124371 Downstream 9bp
chr16 29124379 29124379 1 + G A SKCM 29124376 + 29124356 29124396 41 TGTCACTGATTTCAGTTGTTCTGGAGAATCATGTAGCGACA TGTCACTGATTTCAGTTGTTCTGAAGAATCATGTAGCGACA < 41bp 0.790960323183948 0.581845095157151 0.38029966 0.18565178 prediction 0.418230456053595 Functional Loss - RRN3P2 ENSG00000103472 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:29124376 chr16:29124379 . . 0 24 hm5C_associated_SNPs_90615 0 0 0 2 2 RRN3P2 chr16:29124462 5'GT 29124462 Upstream 84bp
chr20 31644469 31644469 1 + C T LUSC 31644467 + 31644447 31644487 41 GAGGAGGCGGCTTGCTGGGCCACGGAGGGGTTTTTGGCGTT GAGGAGGCGGCTTGCTGGGCCATGGAGGGGTTTTTGGCGTT < 41bp 0.835954105659706 0.626840537422716 0.8921691 0.8623556 prediction 0.418227136473981 Functional Loss - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31644467 chr20:31644469 synonymous SNV . 0 23 hm5C_associated_SNPs_90616 0 0 0 0 1 BPIFB3 chr20:31644504 5'GT 31644504 Upstream 36bp
chr16 56901090 56901090 1 + G A BLCA 56901087 + 56901067 56901107 41 GCACCAGCAGCGAGAAGAACCCCGAGGAGCCAGTGCGCTTC GCACCAGCAGCGAGAAGAACCCCAAGGAGCCAGTGCGCTTC < 41bp 0.81680329734336 0.607690215152828 0.2721498 0.19073361 prediction 0.418226164381063 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56901087 chr16:56901090 nonsynonymous SNV 0.048 1 24 hm5C_associated_SNPs_90619 0 0 0 0 1 SLC12A3 chr16:56901128 5'GT 56901128 Upstream 39bp
chr8 55534750 55534750 1 + G A SKCM 55534747 + 55534727 55534767 41 AGGAAGGGAGCCATTTAAACCAGGAAATTATGACATCCAAA AGGAAGGGAGCCATTTAAACCAGAAAATTATGACATCCAAA < 41bp 0.78814378087065 0.57903464500663 0.499193 0.31916988 prediction 0.418218271728038 Functional Loss - RP1 ENSG00000104237 CDS Human protein_coding chr8:55534747 chr8:55534750 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_90622 0 0 0 0 1 RP1 chr8:55534677 3'AG 55534677 Downstream 74bp
chr20 61937284 61937284 1 + G T SARC 61937280 + 61937260 61937300 41 ACAGGAGCAGCCAGAGGCCCCTCGGCTCTGGAGCCCCGGAG ACAGGAGCAGCCAGAGGCCCCTCGTCTCTGGAGCCCCGGAG < 41bp 0.720312262948793 0.511205845117657 0.61796147 0.27325526 prediction 0.418212835662272 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61937280 chr20:61937284 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_90624 0 0 0 0 1 COL20A1 chr20:61937233 3'AG 61937233 Downstream 52bp
chr22 27026391 27026391 1 + G A SKCM 27026388 + 27026368 27026408 41 TCCGGTGACTACAAACATTTCCGGGAGTGGGGCTCTCATGC TCCGGTGACTACAAACATTTCCGAGAGTGGGGCTCTCATGC < 41bp 0.812298942984474 0.603193660716106 0.7246032 0.39001432 prediction 0.418210564536734 Functional Loss - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27026388 chr22:27026391 synonymous SNV . 0 24 hm5C_associated_SNPs_90625 0 0 0 0 1 CRYBA4 chr22:27026304 3'AG 27026304 Downstream 88bp
chr1 15890478 15890478 1 + G A BLCA 15890475 + 15890455 15890495 41 GAAGGGTGGTGTATAAAACCCTGGAAGACCCTTGGATTGGG GAAGGGTGGTGTATAAAACCCTGAAAGACCCTTGGATTGGG < 41bp 0.791304129609828 0.582202941058998 0.64048296 0.39589056 prediction 0.41820237710166 Functional Loss - DNAJC16 ENSG00000116138 CDS Human protein_coding chr1:15890475 chr1:15890478 nonsynonymous SNV 0.986 0 24 hm5C_associated_SNPs_90628 0 0 1 1 1 DNAJC16 chr1:15890424 3'AG 15890424 Downstream 55bp
chr9 21995109 21995109 1 + G C rs74582729 21995108 + 21995088 21995128 41 TCTGACGCGACATCTGGACACGGCGCGGCGCTGGCGCTGCC TCTGACGCGACATCTGGACACCGCGCGGCGCTGGCGCTGCC < 41bp 0.709098619837606 0.420781421887242 0.3540683 0.1470426 prediction 0.418197239675212 Functional Loss - CDKN2B-AS1 ENSG00000240498 ncRNA_exonic Human antisense chr9:21995108 chr9:21995109 . . 0 22 hm5C_associated_SNPs_90630 0 0 1 0 1 CDKN2B-AS1 chr9:21995160 5'GT 21995160 Upstream 52bp
chr5 177034432 177034432 1 + G T SARC 177034428 + 177034408 177034448 41 GGACTATGGCTTTCCTGAGGCTGGGCCCTTCCACGTGGCCT GGACTATGGCTTTCCTGAGGCTGGTCCCTTCCACGTGGCCT < 41bp 0.711019101082777 0.501924766155948 0.8033422 0.45057738 prediction 0.418188669853657 Functional Loss - B4GALT7 ENSG00000027847 CDS Human protein_coding chr5:177034428 chr5:177034432 synonymous SNV . 0 25 hm5C_associated_SNPs_90631 0 0 1 0 1 B4GALT7 chr5:177034528 5'GT 177034528 Upstream 97bp
chr4 5800490 5800490 1 + A T ESCA 5800486 + 5800466 5800506 41 CATGCACGGAATGCAGCCACCAAGAGCCGGGCCAAGGACAG CATGCACGGAATGCAGCCACCAAGTGCCGGGCCAAGGACAG < 41bp 0.709089867299074 0.386715806846602 0.25864676 0.21630016 prediction 0.418179734598148 Functional Loss - EVC ENSG00000072840 CDS Human protein_coding chr4:5800486 chr4:5800490 nonsynonymous SNV 0.617 2 25 hm5C_associated_SNPs_90635 0 0 1 0 1 EVC chr4:5800519 5'GT 5800519 Upstream 30bp
chr1 159172110 159172110 1 - C T rs41313908 159172113 - 159172093 159172133 41 CAGCTGGGCAAACACACACCCGGGGACTCCTTTCTCCAAGA CAGCTGGGCAAACACACACCCGGAGACTCCTTTCTCCAAGA < 41bp 0.781323776811888 0.572239412201098 0.92213225 0.8824975 prediction 0.418168729221581 Functional Loss - CADM3-AS1 ENSG00000225670 ncRNA_exonic Human antisense chr1:159172113 chr1:159172110 . . 0 24 hm5C_associated_SNPs_90637 0 0 0 0 1 CADM3-AS1 chr1:159172040 5'GT 159172040 Upstream 71bp
chr3 196449372 196449372 1 + G A rs377629523 196449369 + 196449349 196449389 41 AATTAAACAGGACATTCCTGCAGGACTTTATGTGGATCCGT AATTAAACAGGACATTCCTGCAGAACTTTATGTGGATCCGT < 41bp 0.779782722274699 0.570698841178659 0.6632359 0.27913707 prediction 0.418167762192081 Functional Loss - PIGX ENSG00000163964 CDS Human protein_coding chr3:196449369 chr3:196449372 nonsynonymous SNV 0.962 4 24 hm5C_associated_SNPs_90638 0 0 1 1 2 PIGX chr3:196449286 3'AG 196449286 Downstream 87bp
chr3 196449372 196449372 1 + G A rs377629523 196449369 + 196449349 196449389 41 AATTAAACAGGACATTCCTGCAGGACTTTATGTGGATCCGT AATTAAACAGGACATTCCTGCAGAACTTTATGTGGATCCGT < 41bp 0.779782722274699 0.570698841178659 0.6632359 0.27913707 prediction 0.418167762192081 Functional Loss - PIGX ENSG00000163964 CDS Human protein_coding chr3:196449369 chr3:196449372 nonsynonymous SNV 0.962 4 24 hm5C_associated_SNPs_90638 0 0 1 1 2 PIGX chr3:196449427 5'GT 196449427 Upstream 56bp
chr17 2265520 2265520 1 + G A BLCA 2265517 + 2265497 2265537 41 TGGGTACGCACGGCGCTCATCGAGAAAGTTCTGGACAAGGT TGGGTACGCACGGCGCTCATCGAAAAAGTTCTGGACAAGGT < 41bp 0.789672465730605 0.580596851943594 0.70227706 0.48592284 prediction 0.418151227574022 Functional Loss - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2265517 chr17:2265520 synonymous SNV . 0 24 hm5C_associated_SNPs_90640 0 0 1 0 1 SGSM2 chr17:2265564 5'GT 2265564 Upstream 45bp
chr7 45222786 45222786 1 + G T GBM 45222783 + 45222763 45222803 41 GAGAGTTTCACCAACTGCACCGAGATGGAGGCCAATGTCGT GAGAGTTTCACCAACTGCACCGATATGGAGGCCAATGTCGT < 41bp 0.709075318187277 0.315265268406897 0.48645198 0.14506418 prediction 0.418150636374554 Functional Loss - RAMP3 ENSG00000122679 CDS Human protein_coding chr7:45222783 chr7:45222786 nonsynonymous SNV 0.129 3 24 hm5C_associated_SNPs_90641 0 0 0 0 1 RAMP3 chr7:45222756 3'AG 45222756 Downstream 31bp
chr9 117092830 117092830 1 + G A COAD 117092827 + 117092807 117092847 41 ACCCCCAACAAGACAGAGGACACGATCTTTCTCAGAGAGTA ACCCCCAACAAGACAGAGGACACAATCTTTCTCAGAGAGTA < 41bp 0.709070817339511 0.472832423003801 0.014503747 0.024045378 prediction 0.418141634679022 Functional Loss - ORM2 ENSG00000228278 CDS Human protein_coding chr9:117092827 chr9:117092830 synonymous SNV . 0 24 hm5C_associated_SNPs_90643 0 0 1 0 1 ORM2 chr9:117092856 5'GT 117092856 Upstream 27bp
chr9 117092829 117092829 1 + C T STAD 117092827 + 117092807 117092847 41 ACCCCCAACAAGACAGAGGACACGATCTTTCTCAGAGAGTA ACCCCCAACAAGACAGAGGACATGATCTTTCTCAGAGAGTA < 41bp 0.709070817339511 0.435038958873791 0.014503747 0.040005803 prediction 0.418141634679022 Functional Loss - ORM2 ENSG00000228278 CDS Human protein_coding chr9:117092827 chr9:117092829 nonsynonymous SNV 0.003 3 23 hm5C_associated_SNPs_90644 0 0 1 0 1 ORM2 chr9:117092856 5'GT 117092856 Upstream 28bp
chr10 89503311 89503311 1 + G A UCEC 89503308 + 89503288 89503328 41 GACTGGCGGATGAAGCAGCACGCGGCTGTGCTCGAGGAAGG GACTGGCGGATGAAGCAGCACGCAGCTGTGCTCGAGGAAGG < 41bp 0.818303218349005 0.609233587486852 0.20321688 0.07181269 prediction 0.418139261724307 Functional Loss - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89503308 chr10:89503311 synonymous SNV . 0 24 hm5C_associated_SNPs_90646 0 0 0 0 1 PAPSS2 chr10:89503398 5'GT 89503398 Upstream 88bp
chr17 4799807 4799807 1 + G A OV 4799804 + 4799784 4799824 41 ATGCTGCTGTGCTACGAGGACGAGGGTGTCTACGTCAACAC ATGCTGCTGTGCTACGAGGACGAAGGTGTCTACGTCAACAC < 41bp 0.709066476010127 0.463268008209621 0.82095337 0.24078947 prediction 0.418132952020253 Functional Loss - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799804 chr17:4799807 synonymous SNV . 0 24 hm5C_associated_SNPs_90649 0 0 1 0 2 MINK1 chr17:4799724 3'AG 4799724 Downstream 84bp
chr17 4799807 4799807 1 + G A OV 4799804 + 4799784 4799824 41 ATGCTGCTGTGCTACGAGGACGAGGGTGTCTACGTCAACAC ATGCTGCTGTGCTACGAGGACGAAGGTGTCTACGTCAACAC < 41bp 0.709066476010127 0.463268008209621 0.82095337 0.24078947 prediction 0.418132952020253 Functional Loss - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799804 chr17:4799807 synonymous SNV . 0 24 hm5C_associated_SNPs_90649 0 0 1 0 2 MINK1 chr17:4799883 5'GT 4799883 Upstream 77bp
chr8 143922636 143922636 1 + C T SKCM 143922634 + 143922614 143922654 41 ATTAGGCGCTGTATGACAATCTCCATTCGTAAGTACCTCTT ATTAGGCGCTGTATGACAATCTTCATTCGTAAGTACCTCTT < 41bp 0.861402943170991 0.652338787740959 0.96948457 0.8133398 prediction 0.418128310860063 Functional Loss - GML ENSG00000104499 CDS Human protein_coding chr8:143922634 chr8:143922636 nonsynonymous SNV 0.017 3 23 hm5C_associated_SNPs_90652 0 0 0 0 1 GML chr8:143922641 5'GT 143922641 Upstream 6bp
chr13 102344974 102344974 1 + G A SKCM 102344971 + 102344951 102344991 41 CAAATGCACCTGCTATCCTCCAGGAGATCGCCGGGTGTATG CAAATGCACCTGCTATCCTCCAGAAGATCGCCGGGTGTATG < 41bp 0.709063530078311 0.474743259943767 0.39369878 0.10297191 prediction 0.418127060156622 Functional Loss - ITGBL1 ENSG00000198542 CDS Human protein_coding chr13:102344971 chr13:102344974 nonsynonymous SNV 0.817 4 24 hm5C_associated_SNPs_90653 0 0 0 0 2 ITGBL1 chr13:102344935 3'AG 102344935 Downstream 40bp
chr13 102344974 102344974 1 + G A SKCM 102344971 + 102344951 102344991 41 CAAATGCACCTGCTATCCTCCAGGAGATCGCCGGGTGTATG CAAATGCACCTGCTATCCTCCAGAAGATCGCCGGGTGTATG < 41bp 0.709063530078311 0.474743259943767 0.39369878 0.10297191 prediction 0.418127060156622 Functional Loss - ITGBL1 ENSG00000198542 CDS Human protein_coding chr13:102344971 chr13:102344974 nonsynonymous SNV 0.817 4 24 hm5C_associated_SNPs_90653 0 0 0 0 2 ITGBL1 chr13:102345051 5'GT 102345051 Upstream 78bp
chr19 8486755 8486755 1 + G T PAAD 8486751 + 8486731 8486771 41 ACGGGTGACTGCTGCCACCTCCCCGGCTCCCTGTGTGACTG ACGGGTGACTGCTGCCACCTCCCCTGCTCCCTGTGTGACTG < 41bp 0.711454818009808 0.502399175124077 0.1390225 0.047911346 prediction 0.41811128577146 Functional Loss - MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8486751 chr19:8486755 nonsynonymous SNV 0.987 4 25 hm5C_associated_SNPs_90656 0 0 0 0 1 MARCH2 chr19:8486673 3'AG 8486673 Downstream 83bp
chr12 102057252 102057252 1 + C T UCEC 102057250 + 102057230 102057270 41 ACTGTGGACTCTGTCACTGACACGACTGTCACGATGAGGTG ACTGTGGACTCTGTCACTGACATGACTGTCACGATGAGGTG < 41bp 0.860646142538322 0.651591995567457 0.05981946 0.17347932 prediction 0.418108293941729 Functional Loss - MYBPC1 ENSG00000196091 CDS Human protein_coding chr12:102057250 chr12:102057252 nonsynonymous SNV 0.953 3 23 hm5C_associated_SNPs_90657 0 0 0 0 2 MYBPC1 chr12:102057204 3'AG 102057204 Downstream 49bp
chr12 102057252 102057252 1 + C T UCEC 102057250 + 102057230 102057270 41 ACTGTGGACTCTGTCACTGACACGACTGTCACGATGAGGTG ACTGTGGACTCTGTCACTGACATGACTGTCACGATGAGGTG < 41bp 0.860646142538322 0.651591995567457 0.05981946 0.17347932 prediction 0.418108293941729 Functional Loss - MYBPC1 ENSG00000196091 CDS Human protein_coding chr12:102057250 chr12:102057252 nonsynonymous SNV 0.953 3 23 hm5C_associated_SNPs_90657 0 0 0 0 2 MYBPC1 chr12:102057338 5'GT 102057338 Upstream 87bp
chrX 152083700 152083700 1 + G T LUAD 152083698 + 152083678 152083718 41 CCAGAGAGCTGCCCTCAGGCCGGAGTCGCGCCACATCCTTT CCAGAGAGCTGCCCTCAGGCCGTAGTCGCGCCACATCCTTT < 41bp 0.709051662410883 0.342660469467467 0.24441504 0.0270406 prediction 0.418103324821767 Functional Loss - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152083698 chrX:152083700 synonymous SNV . 0 23 hm5C_associated_SNPs_90658 0 0 0 0 2 ZNF185 chrX:152083682 3'AG 152083682 Downstream 19bp
chrX 152083700 152083700 1 + G T LUAD 152083698 + 152083678 152083718 41 CCAGAGAGCTGCCCTCAGGCCGGAGTCGCGCCACATCCTTT CCAGAGAGCTGCCCTCAGGCCGTAGTCGCGCCACATCCTTT < 41bp 0.709051662410883 0.342660469467467 0.24441504 0.0270406 prediction 0.418103324821767 Functional Loss - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152083698 chrX:152083700 synonymous SNV . 0 23 hm5C_associated_SNPs_90658 0 0 0 0 2 ZNF185 chrX:152083747 5'GT 152083747 Upstream 48bp
chr15 43663581 43663581 1 + G T SARC 43663577 + 43663557 43663597 41 TCCACGAACTGCTCTTGGCTCTGAGCGGGTACCCTGGGTCC TCCACGAACTGCTCTTGGCTCTGATCGGGTACCCTGGGTCC < 41bp 0.746223827728098 0.537179934537135 0.32113147 0.19915634 prediction 0.418087786381925 Functional Loss - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43663577 chr15:43663581 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_90665 0 0 1 0 1 TUBGCP4 chr15:43663630 5'GT 43663630 Upstream 50bp
chr13 32889721 32889721 1 + G T rs55641815 32889718 + 32889698 32889738 41 TTGCGGCGGTGGGTCGCCGCCGGGAGAAGCGTGAGGGGACA TTGCGGCGGTGGGTCGCCGCCGGTAGAAGCGTGAGGGGACA < 41bp 0.903225019477777 0.694185002753118 0.91222274 0.8575425 prediction 0.418080033449318 Functional Loss - BRCA2 ENSG00000139618 UTR5 Human protein_coding chr13:32889718 chr13:32889721 . . 0 24 hm5C_associated_SNPs_90668 0 0 1 0 1 BRCA2 chr13:32889804 5'GT 32889804 Upstream 84bp
chr6 170700152 170700152 1 + T C UCEC 170700151 + 170700131 170700171 41 AAGGCAGTCGTCTGCAAGGCCTGCATGAAGGAGAACAGACG AAGGCAGTCGTCTGCAAGGCCCGCATGAAGGAGAACAGACG < 41bp 0.70903835379993 0.43097850541904 0.123040885 0.035775572 prediction 0.418076707599861 Functional Loss - FAM120B ENSG00000112584 CDS Human protein_coding chr6:170700151 chr6:170700152 nonsynonymous SNV 0.631 4 22 hm5C_associated_SNPs_90670 0 0 1 0 2 FAM120B chr6:170700101 3'AG 170700101 Downstream 52bp
chr6 170700152 170700152 1 + T C UCEC 170700151 + 170700131 170700171 41 AAGGCAGTCGTCTGCAAGGCCTGCATGAAGGAGAACAGACG AAGGCAGTCGTCTGCAAGGCCCGCATGAAGGAGAACAGACG < 41bp 0.70903835379993 0.43097850541904 0.123040885 0.035775572 prediction 0.418076707599861 Functional Loss - FAM120B ENSG00000112584 CDS Human protein_coding chr6:170700151 chr6:170700152 nonsynonymous SNV 0.631 4 22 hm5C_associated_SNPs_90670 0 0 1 0 2 FAM120B chr6:170700209 5'GT 170700209 Upstream 58bp
chr14 104471677 104471677 1 + C T UCEC 104471674 + 104471654 104471694 41 ACATGGGTGAGCCGAGAGCTCTGCTGGCCACTGCCCTTTCC ACATGGGTGAGCCGAGAGCTCTGTTGGCCACTGCCCTTTCC < 41bp 0.742022216359466 0.532988295438981 0.19491938 0.22334337 prediction 0.418067841840971 Functional Loss - TDRD9 ENSG00000156414 CDS Human protein_coding chr14:104471674 chr14:104471677 synonymous SNV . 0 24 hm5C_associated_SNPs_90672 0 0 0 0 1 TDRD9 chr14:104471742 5'GT 104471742 Upstream 66bp
chr19 10568687 10568687 1 + G A SKCM 10568684 + 10568664 10568704 41 ACAGCCCATGTCCCAAATCACAGGGTTGAAAAAGTTGATGC ACAGCCCATGTCCCAAATCACAGAGTTGAAAAAGTTGATGC < 41bp 0.805478215010145 0.596446003599527 0.94931513 0.94320536 prediction 0.418064422821236 Functional Loss - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10568684 chr19:10568687 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_90674 0 0 1 0 1 PDE4A chr19:10568778 5'GT 10568778 Upstream 92bp
chr16 85952067 85952067 1 + G T LUSC 85952064 + 85952044 85952084 41 GCTTCTACTATGGGGGCAAGCTGGTGGGCCAGGCCACCACC GCTTCTACTATGGGGGCAAGCTGTTGGGCCAGGCCACCACC < 41bp 0.939383917630844 0.730357702605082 0.8526208 0.23045176 prediction 0.418052430051523 Functional Loss - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85952064 chr16:85952067 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_90677 0 0 0 0 1 IRF8 chr16:85952023 3'AG 85952023 Downstream 45bp
chr19 17883492 17883492 1 + C T UCEC 17883489 + 17883469 17883509 41 AAGCAGAACATCGAGAACGTCAGCGTGGAGATGCTACTCAG AAGCAGAACATCGAGAACGTCAGTGTGGAGATGCTACTCAG < 41bp 0.734443311358587 0.525418101500074 0.3809788 0.13685581 prediction 0.418050419717025 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17883489 chr19:17883492 synonymous SNV . 0 24 hm5C_associated_SNPs_90678 0 0 1 0 2 FCHO1 chr19:17883454 3'AG 17883454 Downstream 39bp
chr19 17883492 17883492 1 + C T UCEC 17883489 + 17883469 17883509 41 AAGCAGAACATCGAGAACGTCAGCGTGGAGATGCTACTCAG AAGCAGAACATCGAGAACGTCAGTGTGGAGATGCTACTCAG < 41bp 0.734443311358587 0.525418101500074 0.3809788 0.13685581 prediction 0.418050419717025 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17883489 chr19:17883492 synonymous SNV . 0 24 hm5C_associated_SNPs_90678 0 0 1 0 2 FCHO1 chr19:17883550 5'GT 17883550 Upstream 59bp
chr4 134084176 134084176 1 + G A COAD 134084173 + 134084153 134084193 41 GCACTGAGGAATGTAAAGCTCTGGGCCACTCAGATCGGTGC GCACTGAGGAATGTAAAGCTCTGAGCCACTCAGATCGGTGC < 41bp 0.709015819727967 0.468826402101747 0.90585583 0.53373665 prediction 0.418031639455934 Functional Loss - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134084173 chr4:134084176 nonsynonymous SNV 0.962 2 24 hm5C_associated_SNPs_90683 0 0 0 0 1 PCDH10 chr4:134084132 3'AG 134084132 Downstream 45bp
chr19 56515435 56515435 1 + C T LUSC 56515433 + 56515413 56515453 41 AACATGAACCTGCGAACCCTCTCGGAGAAGGCACGGGATGA AACATGAACCTGCGAACCCTCTTGGAGAAGGCACGGGATGA < 41bp 0.709015816314597 0.429567050773057 0.14167175 0.20794421 prediction 0.418031632629193 Functional Loss - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56515433 chr19:56515435 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_90684 0 0 0 0 1 NLRP5 chr19:56515461 5'GT 56515461 Upstream 27bp
chr9 95840246 95840246 1 + G A SKCM 95840243 + 95840223 95840263 41 ACCTGCTGCCTCCTCAAGTGCGTGAAGAAGAGCAAGCGGCG ACCTGCTGCCTCCTCAAGTGCGTAAAGAAGAGCAAGCGGCG < 41bp 0.709014898819584 0.452895683371553 0.4074352 0.3032617 prediction 0.418029797639169 Functional Loss - SUSD3 ENSG00000157303 CDS Human protein_coding chr9:95840243 chr9:95840246 synonymous SNV . 0 24 hm5C_associated_SNPs_90685 0 0 0 0 1 SUSD3 chr9:95840275 5'GT 95840275 Upstream 30bp
chr11 66189949 66189949 1 + A T LUAD 66189945 + 66189925 66189965 41 GACCTGGTTGCCCAGGGTGACAGCATCTACGACATCATTGA GACCTGGTTGCCCAGGGTGACAGCTTCTACGACATCATTGA < 41bp 0.709012038769294 0.372768843377322 0.5276498 0.6425534 prediction 0.418024077538588 Functional Loss - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66189945 chr11:66189949 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_90688 0 0 0 0 2 NPAS4 chr11:66189922 3'AG 66189922 Downstream 28bp
chr11 66189949 66189949 1 + A T LUAD 66189945 + 66189925 66189965 41 GACCTGGTTGCCCAGGGTGACAGCATCTACGACATCATTGA GACCTGGTTGCCCAGGGTGACAGCTTCTACGACATCATTGA < 41bp 0.709012038769294 0.372768843377322 0.5276498 0.6425534 prediction 0.418024077538588 Functional Loss - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66189945 chr11:66189949 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_90688 0 0 0 0 2 NPAS4 chr11:66190024 5'GT 66190024 Upstream 76bp
chr6 102134198 102134198 1 + C T HNSC 102134196 + 102134176 102134216 41 GATTGCAGGCACCTCCGAAACCCGATTCAGGTTTGCTGGAT GATTGCAGGCACCTCCGAAACCTGATTCAGGTTTGCTGGAT < 41bp 0.709010732800178 0.438016220504638 0.13524055 0.14337355 prediction 0.418021465600355 Functional Loss - GRIK2 ENSG00000164418 CDS Human protein_coding chr6:102134196 chr6:102134198 synonymous SNV . 0 23 hm5C_associated_SNPs_90689 0 0 0 0 1 GRIK2 chr6:102134228 5'GT 102134228 Upstream 31bp
chr11 66288755 66288755 1 + C T UCEC 66288752 + 66288732 66288772 41 TGTTTGCAGATGAGCCTTCCCAGCGTCCCCGTCTTCCTAGA TGTTTGCAGATGAGCCTTCCCAGTGTCCCCGTCTTCCTAGA < 41bp 0.724687311450887 0.515677515164392 0.7804343 0.3014322 prediction 0.418019592572989 Functional Loss - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66288752 chr11:66288755 synonymous SNV . 0 24 hm5C_associated_SNPs_90691 0 0 0 1 2 BBS1 chr11:66288741 3'AG 66288741 Downstream 15bp
chr11 66288755 66288755 1 + C T UCEC 66288752 + 66288732 66288772 41 TGTTTGCAGATGAGCCTTCCCAGCGTCCCCGTCTTCCTAGA TGTTTGCAGATGAGCCTTCCCAGTGTCCCCGTCTTCCTAGA < 41bp 0.724687311450887 0.515677515164392 0.7804343 0.3014322 prediction 0.418019592572989 Functional Loss - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66288752 chr11:66288755 synonymous SNV . 0 24 hm5C_associated_SNPs_90691 0 0 0 1 2 BBS1 chr11:66288847 5'GT 66288847 Upstream 93bp
chr19 18971211 18971211 1 + A T LUAD 18971207 + 18971187 18971227 41 TCTTCTACGTGACCCAGGGCCAAGAGGAGATTGCCAGCTCG TCTTCTACGTGACCCAGGGCCAAGTGGAGATTGCCAGCTCG < 41bp 0.709004564727104 0.383101474329849 0.88702583 0.87199205 prediction 0.418009129454207 Functional Loss - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18971207 chr19:18971211 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_90695 0 0 1 0 2 UPF1 chr19:18971130 3'AG 18971130 Downstream 82bp
chr19 18971211 18971211 1 + A T LUAD 18971207 + 18971187 18971227 41 TCTTCTACGTGACCCAGGGCCAAGAGGAGATTGCCAGCTCG TCTTCTACGTGACCCAGGGCCAAGTGGAGATTGCCAGCTCG < 41bp 0.709004564727104 0.383101474329849 0.88702583 0.87199205 prediction 0.418009129454207 Functional Loss - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18971207 chr19:18971211 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_90695 0 0 1 0 2 UPF1 chr19:18971247 5'GT 18971247 Upstream 37bp
chr2 85823673 85823673 1 + T C PAAD 85823672 + 85823652 85823692 41 AATAGGATGGACTTTGAAGACTTGGGGTTGGTAGTAGATTG AATAGGATGGACTTTGAAGACCTGGGGTTGGTAGTAGATTG < 41bp 0.802418869525695 0.593417600996939 0.16685957 0.2962714 prediction 0.418002537057514 Functional Loss - RNF181 ENSG00000168894 CDS Human protein_coding chr2:85823672 chr2:85823673 synonymous SNV . 0 22 hm5C_associated_SNPs_90698 0 0 1 0 2 RNF181 chr2:85823642 3'AG 85823642 Downstream 32bp
chr2 85823673 85823673 1 + T C PAAD 85823672 + 85823652 85823692 41 AATAGGATGGACTTTGAAGACTTGGGGTTGGTAGTAGATTG AATAGGATGGACTTTGAAGACCTGGGGTTGGTAGTAGATTG < 41bp 0.802418869525695 0.593417600996939 0.16685957 0.2962714 prediction 0.418002537057514 Functional Loss - RNF181 ENSG00000168894 CDS Human protein_coding chr2:85823672 chr2:85823673 synonymous SNV . 0 22 hm5C_associated_SNPs_90698 0 0 1 0 2 RNF181 chr2:85823772 5'GT 85823772 Upstream 100bp
chr2 118583085 118583085 1 + A C UCEC 118583081 + 118583061 118583101 41 CCAGTTCTGCAATGCAGATTCGGGAACACTATTGTGTACGG CCAGTTCTGCAATGCAGATTCGGGCACACTATTGTGTACGG < 41bp 0.93425610873215 0.725256390942859 0.84974575 0.44008365 prediction 0.417999435578583 Functional Loss - DDX18 ENSG00000088205 CDS Human protein_coding chr2:118583081 chr2:118583085 synonymous SNV . 0 25 hm5C_associated_SNPs_90699 0 0 1 0 2 DDX18 chr2:118583023 3'AG 118583023 Downstream 63bp
chr2 118583085 118583085 1 + A C UCEC 118583081 + 118583061 118583101 41 CCAGTTCTGCAATGCAGATTCGGGAACACTATTGTGTACGG CCAGTTCTGCAATGCAGATTCGGGCACACTATTGTGTACGG < 41bp 0.93425610873215 0.725256390942859 0.84974575 0.44008365 prediction 0.417999435578583 Functional Loss - DDX18 ENSG00000088205 CDS Human protein_coding chr2:118583081 chr2:118583085 synonymous SNV . 0 25 hm5C_associated_SNPs_90699 0 0 1 0 2 DDX18 chr2:118583175 5'GT 118583175 Upstream 91bp
chr14 70237961 70237961 1 + G A UCEC 70237958 + 70237938 70237978 41 GACCAGAAGTTCCTCTAGGTCTCGTAGCCGATCCCGTTCCC GACCAGAAGTTCCTCTAGGTCTCATAGCCGATCCCGTTCCC < 41bp 0.79683725314695 0.587839424859189 0.42273825 0.30729532 prediction 0.417995656575523 Functional Loss - SRSF5 ENSG00000100650 CDS Human protein_coding chr14:70237958 chr14:70237961 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_90701 0 0 1 0 1 SRSF5 chr14:70237911 3'AG 70237911 Downstream 51bp
chr1 43812205 43812205 1 + G A SKCM 43812202 + 43812182 43812222 41 CTCTCGCTGCCACTTCAAGTCACGAAATGACAGCATTATTC CTCTCGCTGCCACTTCAAGTCACAAAATGACAGCATTATTC < 41bp 0.794147493161559 0.58514998124338 0.07681173 0.04705015 prediction 0.417995023836358 Functional Loss - MPL ENSG00000117400 CDS Human protein_coding chr1:43812202 chr1:43812205 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_90702 0 0 0 0 2 MPL chr1:43812116 3'AG 43812116 Downstream 90bp
chr1 43812205 43812205 1 + G A SKCM 43812202 + 43812182 43812222 41 CTCTCGCTGCCACTTCAAGTCACGAAATGACAGCATTATTC CTCTCGCTGCCACTTCAAGTCACAAAATGACAGCATTATTC < 41bp 0.794147493161559 0.58514998124338 0.07681173 0.04705015 prediction 0.417995023836358 Functional Loss - MPL ENSG00000117400 CDS Human protein_coding chr1:43812202 chr1:43812205 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_90702 0 0 0 0 2 MPL chr1:43812300 5'GT 43812300 Upstream 96bp
chr19 14024360 14024360 1 + G A COAD 14024357 + 14024337 14024377 41 ACCCAGCCGGCCCCTAGAATCGCGTCAGCCCCAGAGCCCAG ACCCAGCCGGCCCCTAGAATCGCATCAGCCCCAGAGCCCAG < 41bp 0.819741409411766 0.610747899160079 0.73311216 0.4765824 prediction 0.417987020503373 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14024357 chr19:14024360 synonymous SNV . 0 24 hm5C_associated_SNPs_90705 0 0 0 0 1 CC2D1A chr19:14024451 5'GT 14024451 Upstream 92bp
chr1 32669813 32669813 1 + G A COAD 32669810 + 32669790 32669830 41 AGGAATGCTCCTTTGAGCAGCTGGAGCACGTTCGGGAGATG AGGAATGCTCCTTTGAGCAGCTGAAGCACGTTCGGGAGATG < 41bp 0.81311643794132 0.604128214388513 0.33175796 0.5734174 prediction 0.417976447105614 Functional Loss - CCDC28B ENSG00000160050 CDS Human protein_coding chr1:32669810 chr1:32669813 nonsynonymous SNV 0.864 4 24 hm5C_associated_SNPs_90707 0 0 1 0 1 CCDC28B chr1:32669787 3'AG 32669787 Downstream 27bp
chr5 60368966 60368966 1 + G A LUSC 60368963 + 60368943 60368983 41 GTCTTATAGGACAAACTATTCGAGAGAAAAGAATTGTAGAA GTCTTATAGGACAAACTATTCGAAAGAAAAGAATTGTAGAA < 41bp 0.723573963999054 0.514591481355678 0.874258 0.33195454 prediction 0.417964965286753 Functional Loss - NDUFAF2 ENSG00000164182 CDS Human protein_coding chr5:60368963 chr5:60368966 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_90711 0 0 1 0 2 NDUFAF2 chr5:60368952 3'AG 60368952 Downstream 15bp
chr5 60368966 60368966 1 + G A LUSC 60368963 + 60368943 60368983 41 GTCTTATAGGACAAACTATTCGAGAGAAAAGAATTGTAGAA GTCTTATAGGACAAACTATTCGAAAGAAAAGAATTGTAGAA < 41bp 0.723573963999054 0.514591481355678 0.874258 0.33195454 prediction 0.417964965286753 Functional Loss - NDUFAF2 ENSG00000164182 CDS Human protein_coding chr5:60368963 chr5:60368966 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_90711 0 0 1 0 2 NDUFAF2 chr5:60369041 5'GT 60369041 Upstream 76bp
chr4 6695708 6695708 1 + C T rs543945473 6695706 + 6695686 6695726 41 CATGATCATAGACGTCTTTTCCCGATATTCGGGCAGCGAGG CATGATCATAGACGTCTTTTCCTGATATTCGGGCAGCGAGG < 41bp 0.828284540788775 0.619303100773176 0.40357503 0.27005583 prediction 0.417962880031198 Functional Loss - S100P ENSG00000163993 CDS Human protein_coding chr4:6695706 chr4:6695708 stopgain 0.002 0 23 hm5C_associated_SNPs_90712 0 0 1 0 1 S100P chr4:6695797 5'GT 6695797 Upstream 90bp
chr16 68330381 68330381 1 + C T rs193099058 68330378 + 68330358 68330398 41 CTGTTGTTGGACAGCTCTACCTCCGCTGGAAGGAGCCCAAG CTGTTGTTGGACAGCTCTACCTCTGCTGGAAGGAGCCCAAG < 41bp 0.776167418048415 0.567189028012751 0.33066988 0.21929514 prediction 0.417956780071328 Functional Loss - SLC7A6 ENSG00000103064 CDS Human protein_coding chr16:68330378 chr16:68330381 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_90714 0 0 1 0 1 SLC7A6 chr16:68330416 5'GT 68330416 Upstream 36bp
chr1 3542374 3542374 1 + C T UCEC 3542371 + 3542351 3542391 41 ACTTCATCAGTCTCCAGTGCCAGCAGGTGGTGCGGATAGCG ACTTCATCAGTCTCCAGTGCCAGTAGGTGGTGCGGATAGCG < 41bp 0.741282858761382 0.532304951146767 0.44286564 0.08315027 prediction 0.417955815229231 Functional Loss - TPRG1L ENSG00000158109 CDS Human protein_coding chr1:3542371 chr1:3542374 stopgain 1.000 1 24 hm5C_associated_SNPs_90715 0 0 1 0 1 TPRG1L chr1:3542453 5'GT 3542453 Upstream 80bp
chr3 178928251 178928251 1 + G A UCEC 178928248 + 178928228 178928268 41 TGCTTAGAGTTGGAGTTTGACTGGTTCAGCAGTGTGGTAAA TGCTTAGAGTTGGAGTTTGACTGATTCAGCAGTGTGGTAAA < 41bp 0.785484316780534 0.576506565480652 0.26509959 0.17680493 prediction 0.417955502599763 Functional Loss - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178928248 chr3:178928251 stopgain 1.000 0 24 hm5C_associated_SNPs_90716 0 0 1 0 1 PIK3CA chr3:178928219 3'AG 178928219 Downstream 33bp
chr16 85689494 85689494 1 + G A rs59732374 85689491 + 85689471 85689511 41 TCATCCCTGGCAGCGCTGCACTCGGAGCGCATGTCTGGCCT TCATCCCTGGCAGCGCTGCACTCAGAGCGCATGTCTGGCCT < 41bp 0.820071576240336 0.611094817007066 0.2709361 0.044853598 prediction 0.417953518466538 Functional Loss - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85689491 chr16:85689494 synonymous SNV . 0 24 hm5C_associated_SNPs_90717 0 0 1 0 1 GSE1 chr16:85689523 5'GT 85689523 Upstream 30bp
chr5 162869531 162869531 1 + G T UCEC 162869529 + 162869509 162869549 41 CAATTGAAGCATAGCTACTACAGAATAACTCACCTTCCAAC CAATTGAAGCATAGCTACTACATAATAACTCACCTTCCAAC < 41bp 0.708975706030612 0.380733217636675 0.4282947 0.13247648 prediction 0.417951412061224 Functional Loss - CCNG1 ENSG00000113328 CDS Human protein_coding chr5:162869529 chr5:162869531 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_90718 0 0 1 2 1 CCNG1 chr5:162869574 5'GT 162869574 Upstream 44bp
chr2 95955569 95955569 1 + G A rs190805355 95955566 + 95955546 95955586 41 AGGTAACGCCACTAATCAGGCAGGGGCCACCATGGCCTAGG AGGTAACGCCACTAATCAGGCAGAGGCCACCATGGCCTAGG < 41bp 0.759926550852335 0.5509510080618 0.90983045 0.88502574 prediction 0.417951085581071 Functional Loss - PROM2 ENSG00000155066 UTR3 Human protein_coding chr2:95955566 chr2:95955569 . . 0 24 hm5C_associated_SNPs_90719 0 0 0 0 1 PROM2 chr2:95955476 3'AG 95955476 Downstream 94bp
chr15 90278735 90278735 1 + T C SKCM 90278734 + 90278714 90278754 41 CCTATAGGCCTGTAAAGCACCTGGATAAAACCATCTGTGCC CCTATAGGCCTGTAAAGCACCCGGATAAAACCATCTGTGCC < 41bp 0.813344005372791 0.604373831350089 0.3081264 0.35148245 prediction 0.417940348045404 Functional Loss - WDR93 ENSG00000140527 CDS Human protein_coding chr15:90278734 chr15:90278735 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_90723 0 0 0 0 2 WDR93 chr15:90278721 3'AG 90278721 Downstream 15bp
chr15 90278735 90278735 1 + T C SKCM 90278734 + 90278714 90278754 41 CCTATAGGCCTGTAAAGCACCTGGATAAAACCATCTGTGCC CCTATAGGCCTGTAAAGCACCCGGATAAAACCATCTGTGCC < 41bp 0.813344005372791 0.604373831350089 0.3081264 0.35148245 prediction 0.417940348045404 Functional Loss - WDR93 ENSG00000140527 CDS Human protein_coding chr15:90278734 chr15:90278735 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_90723 0 0 0 0 2 WDR93 chr15:90278784 5'GT 90278784 Upstream 50bp
chr19 50957538 50957538 1 + G A rs558923030 50957535 + 50957515 50957555 41 CCTGCAGATGTCCCAGACCCCCCGGAGGCTGTGCGCATCAC CCTGCAGATGTCCCAGACCCCCCAGAGGCTGTGCGCATCAC < 41bp 0.708967384814668 0.461257643860142 0.12255779 0.16680512 prediction 0.417934769629335 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957535 chr19:50957538 synonymous SNV . 0 24 hm5C_associated_SNPs_90725 0 0 0 0 2 MYBPC2 chr19:50957522 3'AG 50957522 Downstream 17bp
chr19 50957538 50957538 1 + G A rs558923030 50957535 + 50957515 50957555 41 CCTGCAGATGTCCCAGACCCCCCGGAGGCTGTGCGCATCAC CCTGCAGATGTCCCAGACCCCCCAGAGGCTGTGCGCATCAC < 41bp 0.708967384814668 0.461257643860142 0.12255779 0.16680512 prediction 0.417934769629335 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957535 chr19:50957538 synonymous SNV . 0 24 hm5C_associated_SNPs_90725 0 0 0 0 2 MYBPC2 chr19:50957626 5'GT 50957626 Upstream 89bp
chr12 56361888 56361888 1 + C T COAD 56361885 + 56361865 56361905 41 TCTACCTGGTTTTTGAATTTCTGCACCAAGATCTCAAGAAA TCTACCTGGTTTTTGAATTTCTGTACCAAGATCTCAAGAAA < 41bp 0.708963542351711 0.48867264221438 0.03769341 0.09136626 prediction 0.417927084703423 Functional Loss - CDK2 ENSG00000123374 CDS Human protein_coding chr12:56361885 chr12:56361888 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_90728 0 0 1 0 2 CDK2 chr12:56361833 3'AG 56361833 Downstream 56bp
chr12 56361888 56361888 1 + C T COAD 56361885 + 56361865 56361905 41 TCTACCTGGTTTTTGAATTTCTGCACCAAGATCTCAAGAAA TCTACCTGGTTTTTGAATTTCTGTACCAAGATCTCAAGAAA < 41bp 0.708963542351711 0.48867264221438 0.03769341 0.09136626 prediction 0.417927084703423 Functional Loss - CDK2 ENSG00000123374 CDS Human protein_coding chr12:56361885 chr12:56361888 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_90728 0 0 1 0 2 CDK2 chr12:56361953 5'GT 56361953 Upstream 66bp
chr3 46940283 46940283 1 + C T UCEC 46940281 + 46940261 46940301 41 CTTGATGAGGCTGAGCGCCTCACCGAGGAGGAGCTGCGCGC CTTGATGAGGCTGAGCGCCTCATCGAGGAGGAGCTGCGCGC < 41bp 0.827881180597929 0.618922964840173 0.24873409 0.2674146 prediction 0.417916431515511 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46940281 chr3:46940283 nonsynonymous SNV 0.975 0 23 hm5C_associated_SNPs_90730 0 0 0 0 1 PTH1R chr3:46940347 5'GT 46940347 Upstream 65bp
chr1 161140467 161140467 1 + C T CESC 161140465 + 161140445 161140485 41 GGCTAGTGGCTGTGTCTTATCTCAGGAGCTGTTTCAACAGC GGCTAGTGGCTGTGTCTTATCTTAGGAGCTGTTTCAACAGC < 41bp 0.861261022284381 0.652303504608766 0.06774342 0.1286749 prediction 0.41791503535123 Functional Loss - PPOX ENSG00000143224 CDS Human protein_coding chr1:161140465 chr1:161140467 stopgain 0.667 0 23 hm5C_associated_SNPs_90732 0 0 1 1 2 PPOX chr1:161140410 3'AG 161140410 Downstream 58bp
chr1 161140467 161140467 1 + C T CESC 161140465 + 161140445 161140485 41 GGCTAGTGGCTGTGTCTTATCTCAGGAGCTGTTTCAACAGC GGCTAGTGGCTGTGTCTTATCTTAGGAGCTGTTTCAACAGC < 41bp 0.861261022284381 0.652303504608766 0.06774342 0.1286749 prediction 0.41791503535123 Functional Loss - PPOX ENSG00000143224 CDS Human protein_coding chr1:161140465 chr1:161140467 stopgain 0.667 0 23 hm5C_associated_SNPs_90732 0 0 1 1 2 PPOX chr1:161140559 5'GT 161140559 Upstream 93bp
chr16 57760011 57760011 1 + C T STAD 57760008 + 57759988 57760028 41 AGAGCGGTTCTTCCGCAACCCAGCGAAGCCCGCGGAGGAGG AGAGCGGTTCTTCCGCAACCCAGTGAAGCCCGCGGAGGAGG < 41bp 0.713734157447206 0.504781380136288 0.47740898 0.85924715 prediction 0.417905554621836 Functional Loss - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57760008 chr16:57760011 nonsynonymous SNV 0.009 1 24 hm5C_associated_SNPs_90738 0 0 0 0 1 DRC7 chr16:57759980 3'AG 57759980 Downstream 32bp
chrX 129185990 129185990 1 + G T THCA 129185987 + 129185967 129186007 41 ACCTCCAAGTGTCAGTGTCCCGCGGGTAAGTGTCCGAGAGA ACCTCCAAGTGTCAGTGTCCCGCTGGTAAGTGTCCGAGAGA < 41bp 0.708952336298295 0.308473971494212 0.9296968 0.2633649 prediction 0.417904672596589 Functional Loss - BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129185987 chrX:129185990 nonsynonymous SNV 0.985 3 24 hm5C_associated_SNPs_90740 0 0 1 0 1 BCORL1 chrX:129185991 5'GT 129185991 Upstream 2bp
chrX 129185989 129185989 1 + C T UCEC 129185987 + 129185967 129186007 41 ACCTCCAAGTGTCAGTGTCCCGCGGGTAAGTGTCCGAGAGA ACCTCCAAGTGTCAGTGTCCCGTGGGTAAGTGTCCGAGAGA < 41bp 0.708952336298295 0.438252984977754 0.9296968 0.9008342 prediction 0.417904672596589 Functional Loss - BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129185987 chrX:129185989 synonymous SNV . 0 23 hm5C_associated_SNPs_90741 0 0 1 0 1 BCORL1 chrX:129185991 5'GT 129185991 Upstream 3bp
chr19 3273898 3273898 1 + C T UCEC 3273895 + 3273875 3273915 41 GCGGCCAATCCAGGTGAAGCCTGCGGACAGTGAAAGCCGCG GCGGCCAATCCAGGTGAAGCCTGTGGACAGTGAAAGCCGCG < 41bp 0.761444025889305 0.552492973463711 0.623208 0.47241625 prediction 0.417902104851188 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3273895 chr19:3273898 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_90742 0 0 0 0 1 CELF5 chr19:3273921 5'GT 3273921 Upstream 24bp
chr8 144124609 144124609 1 + T C rs11136300 144124608 + 144124588 144124628 41 CGCACAGGGCCCAGGGGCTGCTGGCTGCCAGGACCACCGCA CGCACAGGGCCCAGGGGCTGCCGGCTGCCAGGACCACCGCA < 41bp 0.759895757054376 0.55094472782001 0.6143927 0.9015593 prediction 0.417902058468733 Functional Loss - C8orf31 ENSG00000177335 CDS Human processed_transcript chr8:144124608 chr8:144124609 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_90743 0 0 0 0 3 C8orf31 chr8:144124580 3'AG 144124580 Downstream 30bp
chr8 144124609 144124609 1 + T C rs11136300 144124608 + 144124588 144124628 41 CGCACAGGGCCCAGGGGCTGCTGGCTGCCAGGACCACCGCA CGCACAGGGCCCAGGGGCTGCCGGCTGCCAGGACCACCGCA < 41bp 0.759895757054376 0.55094472782001 0.6143927 0.9015593 prediction 0.417902058468733 Functional Loss - C8orf31 ENSG00000177335 CDS Human processed_transcript chr8:144124608 chr8:144124609 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_90743 0 0 0 0 3 C8orf31 chr8:144124595 3'AG 144124595 Downstream 15bp
chr8 144124609 144124609 1 + T C rs11136300 144124608 + 144124588 144124628 41 CGCACAGGGCCCAGGGGCTGCTGGCTGCCAGGACCACCGCA CGCACAGGGCCCAGGGGCTGCCGGCTGCCAGGACCACCGCA < 41bp 0.759895757054376 0.55094472782001 0.6143927 0.9015593 prediction 0.417902058468733 Functional Loss - C8orf31 ENSG00000177335 CDS Human processed_transcript chr8:144124608 chr8:144124609 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_90743 0 0 0 0 3 C8orf31 chr8:144124679 5'GT 144124679 Upstream 71bp
chr19 35551306 35551306 1 + C T COAD 35551303 + 35551283 35551323 41 ATCGTGGGAGGCCGGGACACCAGCTTGGGCCGGTGGCCGTG ATCGTGGGAGGCCGGGACACCAGTTTGGGCCGGTGGCCGTG < 41bp 0.737874478443776 0.528923567163776 0.3954097 0.34716988 prediction 0.41790182256 Functional Loss - HPN ENSG00000105707 CDS Human protein_coding chr19:35551303 chr19:35551306 synonymous SNV . 0 24 hm5C_associated_SNPs_90744 0 0 1 0 1 HPN chr19:35551251 3'AG 35551251 Downstream 56bp
chr4 47427753 47427753 1 + G A SKCM 47427750 + 47427730 47427770 41 ATCCGGAATGAGACGAGTGGCTCGGAAGTGCTCACGAGCGT ATCCGGAATGAGACGAGTGGCTCAGAAGTGCTCACGAGCGT < 41bp 0.70894763862747 0.484014167411058 0.12995368 0.18645069 prediction 0.41789527725494 Functional Loss - GABRB1 ENSG00000163288 CDS Human protein_coding chr4:47427750 chr4:47427753 synonymous SNV . 0 24 hm5C_associated_SNPs_90748 0 0 0 0 1 GABRB1 chr4:47427691 3'AG 47427691 Downstream 63bp
chr12 81627225 81627225 1 + G T UCEC 81627223 + 81627203 81627243 41 GTAATAAATGTTGCAGGTCACAGAATTTCTGCAGGCGCCAT GTAATAAATGTTGCAGGTCACATAATTTCTGCAGGCGCCAT < 41bp 0.708945993014366 0.367527999350374 0.2835721 0.2310287 prediction 0.417891986028731 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81627223 chr12:81627225 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_90749 0 0 1 0 2 ACSS3 chr12:81627128 3'AG 81627128 Downstream 98bp
chr12 81627225 81627225 1 + G T UCEC 81627223 + 81627203 81627243 41 GTAATAAATGTTGCAGGTCACAGAATTTCTGCAGGCGCCAT GTAATAAATGTTGCAGGTCACATAATTTCTGCAGGCGCCAT < 41bp 0.708945993014366 0.367527999350374 0.2835721 0.2310287 prediction 0.417891986028731 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81627223 chr12:81627225 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_90749 0 0 1 0 2 ACSS3 chr12:81627250 5'GT 81627250 Upstream 26bp
chr15 90278780 90278780 1 + G A UCEC 90278777 + 90278757 90278797 41 GGCCCCAGTCCCAGCCTTACCTGGCATGGTAGGTTCCCCAT GGCCCCAGTCCCAGCCTTACCTGACATGGTAGGTTCCCCAT < 41bp 0.819495664090977 0.61055368057123 0.2760442 0.11908439 prediction 0.417883967039494 Functional Loss - WDR93 ENSG00000140527 CDS Human protein_coding chr15:90278777 chr15:90278780 nonsynonymous SNV 0.977 0 24 hm5C_associated_SNPs_90751 0 0 0 0 2 WDR93 chr15:90278721 3'AG 90278721 Downstream 60bp
chr15 90278780 90278780 1 + G A UCEC 90278777 + 90278757 90278797 41 GGCCCCAGTCCCAGCCTTACCTGGCATGGTAGGTTCCCCAT GGCCCCAGTCCCAGCCTTACCTGACATGGTAGGTTCCCCAT < 41bp 0.819495664090977 0.61055368057123 0.2760442 0.11908439 prediction 0.417883967039494 Functional Loss - WDR93 ENSG00000140527 CDS Human protein_coding chr15:90278777 chr15:90278780 nonsynonymous SNV 0.977 0 24 hm5C_associated_SNPs_90751 0 0 0 0 2 WDR93 chr15:90278784 5'GT 90278784 Upstream 5bp
chrX 21627648 21627648 1 + G A SKCM 21627645 + 21627625 21627665 41 CAGTTAGTGCCTGTGACCCACAGGATGACGTGCAACCCCCA CAGTTAGTGCCTGTGACCCACAGAATGACGTGCAACCCCCA < 41bp 0.796761883493991 0.587821535280041 0.88819706 0.391752 prediction 0.417880696427902 Functional Loss - CNKSR2 ENSG00000149970 CDS Human protein_coding chrX:21627645 chrX:21627648 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_90754 0 0 0 0 1 CNKSR2 chrX:21627735 5'GT 21627735 Upstream 88bp
chr7 73971992 73971992 1 + C T COAD 73971990 + 73971970 73972010 41 AAATTATGACGCGAGGCTCTCACGGATCGACATCGCCAACA AAATTATGACGCGAGGCTCTCATGGATCGACATCGCCAACA < 41bp 0.708939324472033 0.427816953527351 0.8076814 0.8417853 prediction 0.417878648944065 Functional Loss - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73971990 chr7:73971992 nonsynonymous SNV 0.202 4 23 hm5C_associated_SNPs_90755 0 0 1 0 2 GTF2IRD1 chr7:73971969 3'AG 73971969 Downstream 24bp
chr7 73971992 73971992 1 + C T COAD 73971990 + 73971970 73972010 41 AAATTATGACGCGAGGCTCTCACGGATCGACATCGCCAACA AAATTATGACGCGAGGCTCTCATGGATCGACATCGCCAACA < 41bp 0.708939324472033 0.427816953527351 0.8076814 0.8417853 prediction 0.417878648944065 Functional Loss - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73971990 chr7:73971992 nonsynonymous SNV 0.202 4 23 hm5C_associated_SNPs_90755 0 0 1 0 2 GTF2IRD1 chr7:73972052 5'GT 73972052 Upstream 61bp
chr11 592657 592657 1 + C T GBM 592654 + 592634 592674 41 CGTGAGGACAGGCTTTTGCTCTGCGACGGCTGCGATGCGGG CGTGAGGACAGGCTTTTGCTCTGTGACGGCTGCGATGCGGG < 41bp 0.746147580577913 0.53721372102976 0.25102508 0.2869138 prediction 0.417867719096306 Functional Loss - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:592654 chr11:592657 synonymous SNV . 0 24 hm5C_associated_SNPs_90758 0 0 1 0 2 PHRF1 chr11:592559 3'AG 592559 Downstream 99bp
chr11 592657 592657 1 + C T GBM 592654 + 592634 592674 41 CGTGAGGACAGGCTTTTGCTCTGCGACGGCTGCGATGCGGG CGTGAGGACAGGCTTTTGCTCTGTGACGGCTGCGATGCGGG < 41bp 0.746147580577913 0.53721372102976 0.25102508 0.2869138 prediction 0.417867719096306 Functional Loss - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:592654 chr11:592657 synonymous SNV . 0 24 hm5C_associated_SNPs_90758 0 0 1 0 2 PHRF1 chr11:592674 5'GT 592674 Upstream 18bp
chr17 56787293 56787293 1 + G A UCEC 56787290 + 56787270 56787310 41 AGATGACCTGTCTCTTCGTACTCGGTTATTAAATGGCCTAG AGATGACCTGTCTCTTCGTACTCAGTTATTAAATGGCCTAG < 41bp 0.708933593999427 0.478467778739877 0.53865075 0.2608915 prediction 0.417867187998855 Functional Loss - RAD51C ENSG00000108384 CDS Human protein_coding chr17:56787290 chr17:56787293 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_90760 1 0 1 0 2 RAD51C chr17:56787220 3'AG 56787220 Downstream 74bp
chr17 56787293 56787293 1 + G A UCEC 56787290 + 56787270 56787310 41 AGATGACCTGTCTCTTCGTACTCGGTTATTAAATGGCCTAG AGATGACCTGTCTCTTCGTACTCAGTTATTAAATGGCCTAG < 41bp 0.708933593999427 0.478467778739877 0.53865075 0.2608915 prediction 0.417867187998855 Functional Loss - RAD51C ENSG00000108384 CDS Human protein_coding chr17:56787290 chr17:56787293 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_90760 1 0 1 0 2 RAD51C chr17:56787351 5'GT 56787351 Upstream 59bp
chr19 19627086 19627086 1 + G C DLBC 19627082 + 19627062 19627102 41 GGTGAAGCAGGACATGCCTCCGCCGGGGGGCTATGGGCCCA GGTGAAGCAGGACATGCCTCCGCCCGGGGGCTATGGGCCCA < 41bp 0.867898235495675 0.658967583564092 0.56134075 0.11431563 prediction 0.417861303863165 Functional Loss - NDUFA13 ENSG00000186010;ENSG00000250067;ENSG00000258674 CDS Human other chr19:19627082 chr19:19627086 synonymous SNV . 0 25 hm5C_associated_SNPs_90766 0 0 1 0 1 NDUFA13 chr19:19627141 5'GT 19627141 Upstream 56bp
chr4 5800369 5800369 1 + G T STAD 5800367 + 5800347 5800387 41 AGGAGGAAGCACAGCAGACACGGCTGCAGCTCCAGCAGCGG AGGAGGAAGCACAGCAGACACGTCTGCAGCTCCAGCAGCGG < 41bp 0.708928983049834 0.354013163746215 0.4568124 0.15231904 prediction 0.417857966099669 Functional Loss - EVC ENSG00000072840 CDS Human protein_coding chr4:5800367 chr4:5800369 synonymous SNV . 0 23 hm5C_associated_SNPs_90767 0 0 1 0 1 EVC chr4:5800313 3'AG 5800313 Downstream 57bp
chr10 96012146 96012146 1 + G A HNSC 96012143 + 96012123 96012163 41 TGGTGGCAGACGGTGGAGTGCTCGAAACCCCAGCCCCGGAA TGGTGGCAGACGGTGGAGTGCTCAAAACCCCAGCCCCGGAA < 41bp 0.800684405309631 0.591757098858316 0.3734367 0.27322692 prediction 0.41785461290263 Functional Loss - PLCE1 ENSG00000138193 CDS Human protein_coding chr10:96012143 chr10:96012146 nonsynonymous SNV 0.043 2 24 hm5C_associated_SNPs_90768 0 0 0 0 1 PLCE1 chr10:96012073 3'AG 96012073 Downstream 74bp
chr8 87447904 87447904 1 + C T STAD 87447901 + 87447881 87447921 41 ATGTAAAGATCAATGTGTCCCGGCAGACATTGTTTGAAGAT ATGTAAAGATCAATGTGTCCCGGTAGACATTGTTTGAAGAT < 41bp 0.708925969422711 0.491127888313841 0.22787693 0.21805596 prediction 0.417851938845422 Functional Loss - WWP1 ENSG00000123124 CDS Human protein_coding chr8:87447901 chr8:87447904 stopgain 0.999 1 24 hm5C_associated_SNPs_90770 0 0 0 0 2 WWP1 chr8:87447862 3'AG 87447862 Downstream 43bp
chr8 87447904 87447904 1 + C T STAD 87447901 + 87447881 87447921 41 ATGTAAAGATCAATGTGTCCCGGCAGACATTGTTTGAAGAT ATGTAAAGATCAATGTGTCCCGGTAGACATTGTTTGAAGAT < 41bp 0.708925969422711 0.491127888313841 0.22787693 0.21805596 prediction 0.417851938845422 Functional Loss - WWP1 ENSG00000123124 CDS Human protein_coding chr8:87447901 chr8:87447904 stopgain 0.999 1 24 hm5C_associated_SNPs_90770 0 0 0 0 2 WWP1 chr8:87447933 5'GT 87447933 Upstream 30bp
chr3 128753037 128753037 1 + G T KIRC 128753034 + 128753014 128753054 41 GACCAGACGGCGGAGAAGCTCATGACTTACTTTGGTCACTT GACCAGACGGCGGAGAAGCTCATTACTTACTTTGGTCACTT < 41bp 0.708925444266665 0.306172696680955 0.7109599 0.29219383 prediction 0.417850888533331 Functional Loss - EFCC1 ENSG00000114654 CDS Human protein_coding chr3:128753034 chr3:128753037 nonsynonymous SNV 0.796 0 24 hm5C_associated_SNPs_90771 0 0 0 0 1 EFCC1 chr3:128753007 3'AG 128753007 Downstream 31bp
chr6 26422350 26422350 1 + G T UCEC 26422346 + 26422326 26422366 41 CCCTGCCTGCTCTGGGTGCTCATGGAACCAGCTGCTGCCCT CCCTGCCTGCTCTGGGTGCTCATGTAACCAGCTGCTGCCCT < 41bp 0.711865002277284 0.5029432868402 0.33188462 0.09627625 prediction 0.417843430874167 Functional Loss - BTN2A3P ENSG00000124549 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:26422346 chr6:26422350 . . 0 25 hm5C_associated_SNPs_90773 0 0 0 0 1 BTN2A3P chr6:26422425 5'GT 26422425 Upstream 76bp
chr5 139216818 139216818 1 + C T UCEC 139216815 + 139216795 139216835 41 TCAAAGGGACCATCCTGTACCTGCAGAAGGTGAGAGACTGC TCAAAGGGACCATCCTGTACCTGTAGAAGGTGAGAGACTGC < 41bp 0.708920934905353 0.4815540731658 0.3166797 0.3398692 prediction 0.417841869810706 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139216815 chr5:139216818 stopgain 1.000 1 24 hm5C_associated_SNPs_90775 0 0 0 0 2 PSD2 chr5:139216753 3'AG 139216753 Downstream 66bp
chr5 139216818 139216818 1 + C T UCEC 139216815 + 139216795 139216835 41 TCAAAGGGACCATCCTGTACCTGCAGAAGGTGAGAGACTGC TCAAAGGGACCATCCTGTACCTGTAGAAGGTGAGAGACTGC < 41bp 0.708920934905353 0.4815540731658 0.3166797 0.3398692 prediction 0.417841869810706 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139216815 chr5:139216818 stopgain 1.000 1 24 hm5C_associated_SNPs_90775 0 0 0 0 2 PSD2 chr5:139216823 5'GT 139216823 Upstream 6bp
chr12 542364 542364 1 + G A SKCM 542361 + 542341 542381 41 TGGAAGCACTGCAGGCTCAGCTGGGAGAGCAGACCAAACTT TGGAAGCACTGCAGGCTCAGCTGAGAGAGCAGACCAAACTT < 41bp 0.810502265168641 0.601584311517311 0.85027236 0.7521397 prediction 0.417835907302661 Functional Loss - CCDC77 ENSG00000120647 CDS Human protein_coding chr12:542361 chr12:542364 nonsynonymous SNV 0.941 2 24 hm5C_associated_SNPs_90776 0 0 1 0 1 CCDC77 chr12:542340 3'AG 542340 Downstream 25bp
chr6 106973206 106973206 1 + G A LUSC 106973203 + 106973183 106973223 41 TTGAAGTTTTCAGTGACATTCAGGATTGCAGTTCTTGGAGC TTGAAGTTTTCAGTGACATTCAGAATTGCAGTTCTTGGAGC < 41bp 0.821590251883765 0.612672529912637 0.92674005 0.62441343 prediction 0.417835443942256 Functional Loss - CRYBG1 ENSG00000112297 CDS Human protein_coding chr6:106973203 chr6:106973206 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_90777 0 0 0 0 2 CRYBG1 chr6:106973143 3'AG 106973143 Downstream 64bp
chr6 106973206 106973206 1 + G A LUSC 106973203 + 106973183 106973223 41 TTGAAGTTTTCAGTGACATTCAGGATTGCAGTTCTTGGAGC TTGAAGTTTTCAGTGACATTCAGAATTGCAGTTCTTGGAGC < 41bp 0.821590251883765 0.612672529912637 0.92674005 0.62441343 prediction 0.417835443942256 Functional Loss - CRYBG1 ENSG00000112297 CDS Human protein_coding chr6:106973203 chr6:106973206 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_90777 0 0 0 0 2 CRYBG1 chr6:106973261 5'GT 106973261 Upstream 56bp
chr19 5667066 5667066 1 + G A HNSC 5667063 + 5667043 5667083 41 TCTGTGATGTCCAGCATTACCCAGAACGCCATGGAGGACCA TCTGTGATGTCCAGCATTACCCAAAACGCCATGGAGGACCA < 41bp 0.797563393796485 0.588646998106488 0.17850289 0.1162138 prediction 0.417832791379994 Functional Loss - SAFB ENSG00000160633 CDS Human protein_coding chr19:5667063 chr19:5667066 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_90779 0 0 1 0 1 SAFB chr19:5667057 3'AG 5667057 Downstream 10bp
chr11 61541490 61541490 1 + G T LUAD 61541486 + 61541466 61541506 41 GGACAAGGGCTTCAACTTTTCGGTGGGCGACGACGCCTTTG GGACAAGGGCTTCAACTTTTCGGTTGGCGACGACGCCTTTG < 41bp 0.743401884982452 0.534487036140248 0.81204736 0.5710255 prediction 0.417829697684408 Functional Loss - MYRF ENSG00000124920 CDS Human protein_coding chr11:61541486 chr11:61541490 synonymous SNV . 0 25 hm5C_associated_SNPs_90780 0 0 1 0 1 MYRF chr11:61541439 3'AG 61541439 Downstream 52bp
chr11 119057385 119057385 1 + G A UCEC 119057382 + 119057362 119057402 41 TGAACAATGATGTTGTGGAACACGAAGACTATGCGGTGGTA TGAACAATGATGTTGTGGAACACAAAGACTATGCGGTGGTA < 41bp 0.811189610774787 0.602280965901825 0.09729484 0.049331605 prediction 0.417817289745924 Functional Loss - PDZD3 ENSG00000172367 CDS Human protein_coding chr11:119057382 chr11:119057385 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_90785 0 0 0 0 1 PDZD3 chr11:119057399 5'GT 119057399 Upstream 15bp
chr3 125694513 125694513 1 + T C UCEC 125694512 + 125694492 125694532 41 CACCTGAGCTGTTAAAGATCCTGCATTCTCAGGTAAGGGCC CACCTGAGCTGTTAAAGATCCCGCATTCTCAGGTAAGGGCC < 41bp 0.845517351772735 0.636613075191256 0.14651471 0.17689702 prediction 0.417808553162959 Functional Loss - ROPN1B ENSG00000114547 CDS Human protein_coding chr3:125694512 chr3:125694513 nonsynonymous SNV 0.975 4 22 hm5C_associated_SNPs_90789 0 0 0 0 1 ROPN1B chr3:125694523 5'GT 125694523 Upstream 11bp
chr16 31405612 31405612 1 + G T STAD 31405610 + 31405590 31405630 41 TGGAGGAGCCTACGATCTTCCAGGAGGATGCAGGCGGCTTT TGGAGGAGCCTACGATCTTCCATGAGGATGCAGGCGGCTTT < 41bp 0.921440606682921 0.712538171293684 0.8772192 0.2846262 prediction 0.417804870778474 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31405610 chr16:31405612 nonsynonymous SNV 0.108 0 23 hm5C_associated_SNPs_90791 0 0 0 0 2 ITGAD chr16:31405557 3'AG 31405557 Downstream 56bp
chr16 31405612 31405612 1 + G T STAD 31405610 + 31405590 31405630 41 TGGAGGAGCCTACGATCTTCCAGGAGGATGCAGGCGGCTTT TGGAGGAGCCTACGATCTTCCATGAGGATGCAGGCGGCTTT < 41bp 0.921440606682921 0.712538171293684 0.8772192 0.2846262 prediction 0.417804870778474 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31405610 chr16:31405612 nonsynonymous SNV 0.108 0 23 hm5C_associated_SNPs_90791 0 0 0 0 2 ITGAD chr16:31405662 5'GT 31405662 Upstream 51bp
chr11 134182365 134182365 1 + C T HNSC 134182363 + 134182343 134182383 41 CCGGAGGCCGCCTCCGTGCCCACGCTCATGACGTGGCACAG CCGGAGGCCGCCTCCGTGCCCATGCTCATGACGTGGCACAG < 41bp 0.708900802199778 0.442053625210966 0.26742196 0.14037085 prediction 0.417801604399556 Functional Loss - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134182363 chr11:134182365 synonymous SNV . 0 23 hm5C_associated_SNPs_90793 0 0 0 0 1 GLB1L3 chr11:134182383 5'GT 134182383 Upstream 19bp
chr11 134182366 134182366 1 + G A UCEC 134182363 + 134182343 134182383 41 CCGGAGGCCGCCTCCGTGCCCACGCTCATGACGTGGCACAG CCGGAGGCCGCCTCCGTGCCCACACTCATGACGTGGCACAG < 41bp 0.708900802199778 0.450047075861189 0.26742196 0.09761688 prediction 0.417801604399556 Functional Loss - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134182363 chr11:134182366 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_90794 0 0 0 0 1 GLB1L3 chr11:134182383 5'GT 134182383 Upstream 18bp
chr2 160027265 160027265 1 + G A STAD 160027262 + 160027242 160027282 41 AGTTGGTGGCCCTGAGCTGCCACGGAAGCCGCATGAGGCAG AGTTGGTGGCCCTGAGCTGCCACAGAAGCCGCATGAGGCAG < 41bp 0.804334306879928 0.59543481671426 0.6781479 0.56403947 prediction 0.417798980331337 Functional Loss - TANC1 ENSG00000115183 CDS Human protein_coding chr2:160027262 chr2:160027265 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_90795 0 0 0 0 1 TANC1 chr2:160027316 5'GT 160027316 Upstream 52bp
chr17 77708877 77708877 1 + G A rs143305291 77708874 + 77708854 77708894 41 GGCTCCTTCTTCTACCCGGGCGGGAACGTCACCTACCAAGG GGCTCCTTCTTCTACCCGGGCGGAAACGTCACCTACCAAGG < 41bp 0.833497355898531 0.624602614868406 0.8967147 0.79927766 prediction 0.41778948206025 Functional Loss - ENPP7 ENSG00000182156 CDS Human protein_coding chr17:77708874 chr17:77708877 synonymous SNV . 0 24 hm5C_associated_SNPs_90798 0 0 0 0 1 ENPP7 chr17:77708842 3'AG 77708842 Downstream 36bp
chr19 2989613 2989613 1 + C T BLCA 2989610 + 2989590 2989630 41 ACCGGTGGCTACAACCTGGCCAGCGTGAGCGTGTGGGACCT ACCGGTGGCTACAACCTGGCCAGTGTGAGCGTGTGGGACCT < 41bp 0.708894523511227 0.49008995782665 0.4590243 0.30930027 prediction 0.417789047022454 Functional Loss - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2989610 chr19:2989613 synonymous SNV . 0 24 hm5C_associated_SNPs_90799 0 0 0 0 1 TLE6 chr19:2989533 3'AG 2989533 Downstream 81bp
chr2 86718384 86718384 1 + G A UCEC 86718381 + 86718361 86718401 41 TGTCACAGACTCATACCAATCACGAAGATAAATTACAGGTA TGTCACAGACTCATACCAATCACAAAGATAAATTACAGGTA < 41bp 0.784887373173377 0.575993617655457 0.13187093 0.13259277 prediction 0.417787511035839 Functional Loss - KDM3A ENSG00000115548 CDS Human protein_coding chr2:86718381 chr2:86718384 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_90801 0 0 1 0 1 KDM3A chr2:86718398 5'GT 86718398 Upstream 15bp
chr5 159854847 159854847 1 + C T STAD 159854845 + 159854825 159854865 41 GTTTCAGCTGGGCCCCCCTTCACCTGTGAAGATGCCCTCTC GTTTCAGCTGGGCCCCCCTTCATCTGTGAAGATGCCCTCTC < 41bp 0.860836474199148 0.651943167542277 0.3967957 0.42740744 prediction 0.417786613313742 Functional Loss - PTTG1 ENSG00000164611 CDS Human protein_coding chr5:159854845 chr5:159854847 nonsynonymous SNV 0.508 3 23 hm5C_associated_SNPs_90802 0 0 1 0 1 PTTG1 chr5:159854880 5'GT 159854880 Upstream 34bp
chr17 37899709 37899709 1 + G A UCEC 37899706 + 37899686 37899726 41 ATGCACACACTGGTATATCCCATGAAGACCTCATCCAGGTG ATGCACACACTGGTATATCCCATAAAGACCTCATCCAGGTG < 41bp 0.70889292614486 0.456549165745851 0.022720635 0.0051933527 prediction 0.417785852289719 Functional Loss - GRB7 ENSG00000141738 CDS Human protein_coding chr17:37899706 chr17:37899709 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_90803 0 0 0 0 2 GRB7 chr17:37899646 3'AG 37899646 Downstream 64bp
chr17 37899709 37899709 1 + G A UCEC 37899706 + 37899686 37899726 41 ATGCACACACTGGTATATCCCATGAAGACCTCATCCAGGTG ATGCACACACTGGTATATCCCATAAAGACCTCATCCAGGTG < 41bp 0.70889292614486 0.456549165745851 0.022720635 0.0051933527 prediction 0.417785852289719 Functional Loss - GRB7 ENSG00000141738 CDS Human protein_coding chr17:37899706 chr17:37899709 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_90803 0 0 0 0 2 GRB7 chr17:37899723 5'GT 37899723 Upstream 15bp
chr3 122128637 122128637 1 + C T rs200828064 122128635 + 122128615 122128655 41 CTTGAACTTAGAAAAGAAAGCTCGTCTGAAAGAGGAAGCAG CTTGAACTTAGAAAAGAAAGCTTGTCTGAAAGAGGAAGCAG < 41bp 0.708890945259655 0.449793233103557 0.084382325 0.061729312 prediction 0.41778189051931 Functional Loss - FAM162A ENSG00000114023 CDS Human protein_coding chr3:122128635 chr3:122128637 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_90804 0 0 1 0 1 FAM162A chr3:122128586 3'AG 122128586 Downstream 52bp
chr16 56623799 56623799 1 + G T SARC 56623795 + 56623775 56623815 41 TCTCTAGGTGGCTCCTGCACCTGCGCGGACTCCTGCAAGTG TCTCTAGGTGGCTCCTGCACCTGCTCGGACTCCTGCAAGTG < 41bp 0.73903428528978 0.530145772546931 0.24230605 0.11454883 prediction 0.417777025485699 Functional Loss - MT3 ENSG00000087250 CDS Human protein_coding chr16:56623795 chr16:56623799 nonsynonymous SNV 0.015 0 25 hm5C_associated_SNPs_90806 0 0 0 0 1 MT3 chr16:56623782 3'AG 56623782 Downstream 18bp
chr14 65499367 65499367 1 + C T LIHC 65499364 + 65499344 65499384 41 GCCTCCGTAGCCTCGCTGACCAACATCATCACTCCAGACCT GCCTCCGTAGCCTCGCTGACCAATATCATCACTCCAGACCT < 41bp 0.708888207430081 0.489353115420516 0.039567977 0.052454114 prediction 0.417776414860162 Functional Loss - CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65499364 chr14:65499367 synonymous SNV . 0 24 hm5C_associated_SNPs_90807 0 0 1 0 2 CHURC1-FNTB;FNTB chr14:65499328 3'AG 65499328 Downstream 40bp
chr14 65499367 65499367 1 + C T LIHC 65499364 + 65499344 65499384 41 GCCTCCGTAGCCTCGCTGACCAACATCATCACTCCAGACCT GCCTCCGTAGCCTCGCTGACCAATATCATCACTCCAGACCT < 41bp 0.708888207430081 0.489353115420516 0.039567977 0.052454114 prediction 0.417776414860162 Functional Loss - CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65499364 chr14:65499367 synonymous SNV . 0 24 hm5C_associated_SNPs_90807 0 0 1 0 2 CHURC1-FNTB;FNTB chr14:65499414 5'GT 65499414 Upstream 48bp
chr22 49103590 49103590 1 + C T rs372988376 49103587 + 49103567 49103607 41 CCGTGTCTGGAGGGGGAAGGCTGCGACTTGTTAATCAACCG CCGTGTCTGGAGGGGGAAGGCTGTGACTTGTTAATCAACCG < 41bp 0.750913653165595 0.542026873976431 0.30968297 0.21372879 prediction 0.417773558378327 Functional Loss - FAM19A5 ENSG00000219438 CDS Human protein_coding chr22:49103587 chr22:49103590 synonymous SNV . 0 24 hm5C_associated_SNPs_90809 0 0 1 0 2 FAM19A5 chr22:49103529 3'AG 49103529 Downstream 62bp
chr22 49103590 49103590 1 + C T rs372988376 49103587 + 49103567 49103607 41 CCGTGTCTGGAGGGGGAAGGCTGCGACTTGTTAATCAACCG CCGTGTCTGGAGGGGGAAGGCTGTGACTTGTTAATCAACCG < 41bp 0.750913653165595 0.542026873976431 0.30968297 0.21372879 prediction 0.417773558378327 Functional Loss - FAM19A5 ENSG00000219438 CDS Human protein_coding chr22:49103587 chr22:49103590 synonymous SNV . 0 24 hm5C_associated_SNPs_90809 0 0 1 0 2 FAM19A5 chr22:49103656 5'GT 49103656 Upstream 67bp
chr3 40457388 40457388 1 + G T SKCM 40457385 + 40457365 40457405 41 GAGTGGAAACCACGGGTGCCCTGGACTTAGGTGGTGCCTCC GAGTGGAAACCACGGGTGCCCTGTACTTAGGTGGTGCCTCC < 41bp 0.936088894461144 0.727206144458122 0.9122337 0.6014237 prediction 0.417765500006045 Functional Loss - ENTPD3 ENSG00000168032 CDS Human protein_coding chr3:40457385 chr3:40457388 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_90811 0 0 0 0 1 ENTPD3 chr3:40457331 3'AG 40457331 Downstream 58bp
chr2 71206289 71206289 1 + G A rs148041218 71206286 + 71206266 71206306 41 GGCGACTGCCCTCGCCAGGCCGCGCCGCCCTGCCTCGCTCA GGCGACTGCCCTCGCCAGGCCGCACCGCCCTGCCTCGCTCA < 41bp 0.708882029773904 0.44431532034773 0.3454207 0.12227765 prediction 0.417764059547808 Functional Loss - ANKRD53 ENSG00000144031 CDS Human protein_coding chr2:71206286 chr2:71206289 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_90812 0 0 0 0 1 ANKRD53 chr2:71206227 3'AG 71206227 Downstream 63bp
chr2 71206288 71206288 1 + C T UCEC 71206286 + 71206266 71206306 41 GGCGACTGCCCTCGCCAGGCCGCGCCGCCCTGCCTCGCTCA GGCGACTGCCCTCGCCAGGCCGTGCCGCCCTGCCTCGCTCA < 41bp 0.708882029773904 0.469594636485199 0.3454207 0.20963052 prediction 0.417764059547808 Functional Loss - ANKRD53 ENSG00000144031 CDS Human protein_coding chr2:71206286 chr2:71206288 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_90813 0 0 0 0 1 ANKRD53 chr2:71206227 3'AG 71206227 Downstream 62bp
chr8 86163111 86163111 1 + C T OV 86163108 + 86163088 86163128 41 GACCCAAGCTCAGCTAAAATCATCAGCAACAGCGGCCATTC GACCCAAGCTCAGCTAAAATCATTAGCAACAGCGGCCATTC < 41bp 0.763893093217754 0.55501321346723 0.055648804 0.08268827 prediction 0.417759759501048 Functional Loss - CA13 ENSG00000185015 CDS Human protein_coding chr8:86163108 chr8:86163111 synonymous SNV . 0 24 hm5C_associated_SNPs_90814 0 0 1 0 1 CA13 chr8:86163166 5'GT 86163166 Upstream 56bp
chr4 140283079 140283079 1 + G A UCEC 140283076 + 140283056 140283096 41 TTACAGATGAGAATAAAGAACACGAAGCTGATACAGGTATA TTACAGATGAGAATAAAGAACACAAAGCTGATACAGGTATA < 41bp 0.765473799952706 0.556594070834241 0.043605685 0.022586852 prediction 0.417759458236929 Functional Loss - NAA15 ENSG00000164134 CDS Human protein_coding chr4:140283076 chr4:140283079 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_90815 0 0 1 0 1 NAA15 chr4:140283091 5'GT 140283091 Upstream 13bp
chr3 193336676 193336676 1 + C T rs34307082 193336673 + 193336653 193336693 41 TTAAGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATC TTAAGGTTCTCCGGAAGAAACGGTGTTTAGAGCAACAGATC < 41bp 0.721772378235546 0.512894177204207 0.55428016 0.39525288 prediction 0.417756402062677 Functional Loss - OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336673 chr3:193336676 nonsynonymous SNV 0.973 1 24 hm5C_associated_SNPs_90817 2 0 0 0 2 OPA1 chr3:193336658 3'AG 193336658 Downstream 19bp
chr3 193336676 193336676 1 + C T rs34307082 193336673 + 193336653 193336693 41 TTAAGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATC TTAAGGTTCTCCGGAAGAAACGGTGTTTAGAGCAACAGATC < 41bp 0.721772378235546 0.512894177204207 0.55428016 0.39525288 prediction 0.417756402062677 Functional Loss - OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336673 chr3:193336676 nonsynonymous SNV 0.973 1 24 hm5C_associated_SNPs_90817 2 0 0 0 2 OPA1 chr3:193336725 5'GT 193336725 Upstream 50bp
chr5 179134154 179134154 1 + G A SKCM 179134151 + 179134131 179134171 41 AGGTGGATTTTATCCAAAGCCAAGAAAGACGATACCGATGA AGGTGGATTTTATCCAAAGCCAAAAAAGACGATACCGATGA < 41bp 0.76261277434854 0.55373513001792 0.2618365 0.14976707 prediction 0.417755288661241 Functional Loss - CANX ENSG00000127022 CDS Human protein_coding chr5:179134151 chr5:179134154 synonymous SNV . 0 24 hm5C_associated_SNPs_90818 0 0 1 0 2 CANX chr5:179134133 3'AG 179134133 Downstream 22bp
chr5 179134154 179134154 1 + G A SKCM 179134151 + 179134131 179134171 41 AGGTGGATTTTATCCAAAGCCAAGAAAGACGATACCGATGA AGGTGGATTTTATCCAAAGCCAAAAAAGACGATACCGATGA < 41bp 0.76261277434854 0.55373513001792 0.2618365 0.14976707 prediction 0.417755288661241 Functional Loss - CANX ENSG00000127022 CDS Human protein_coding chr5:179134151 chr5:179134154 synonymous SNV . 0 24 hm5C_associated_SNPs_90818 0 0 1 0 2 CANX chr5:179134191 5'GT 179134191 Upstream 38bp
chr9 5892543 5892543 1 + G A BRCA 5892540 + 5892520 5892560 41 GGGCACGGCCACTCTTACACCACGGCTGAAGAGTAAGTTCA GGGCACGGCCACTCTTACACCACAGCTGAAGAGTAAGTTCA < 41bp 0.798480700401052 0.589607432661583 0.25168404 0.12700346 prediction 0.417746535478939 Functional Loss - MLANA ENSG00000120215 CDS Human protein_coding chr9:5892540 chr9:5892543 synonymous SNV . 0 24 hm5C_associated_SNPs_90819 0 0 0 0 1 MLANA chr9:5892450 3'AG 5892450 Downstream 94bp
chr16 69373925 69373925 1 + C T BLCA 69373922 + 69373902 69373942 41 CCCTCAGCATTGGGGAGAATCTTCAACTGCTGGTGGACCGG CCCTCAGCATTGGGGAGAATCTTTAACTGCTGGTGGACCGG < 41bp 0.732553481472297 0.523680497390396 0.8912637 0.1851739 prediction 0.417745968163803 Functional Loss - NIP7 ENSG00000132603 CDS Human protein_coding chr16:69373922 chr16:69373925 stopgain 0.463 1 24 hm5C_associated_SNPs_90820 0 0 1 0 2 NIP7 chr16:69373909 3'AG 69373909 Downstream 17bp
chr16 69373925 69373925 1 + C T BLCA 69373922 + 69373902 69373942 41 CCCTCAGCATTGGGGAGAATCTTCAACTGCTGGTGGACCGG CCCTCAGCATTGGGGAGAATCTTTAACTGCTGGTGGACCGG < 41bp 0.732553481472297 0.523680497390396 0.8912637 0.1851739 prediction 0.417745968163803 Functional Loss - NIP7 ENSG00000132603 CDS Human protein_coding chr16:69373922 chr16:69373925 stopgain 0.463 1 24 hm5C_associated_SNPs_90820 0 0 1 0 2 NIP7 chr16:69373995 5'GT 69373995 Upstream 71bp
chr2 132290508 132290508 1 + C T SKCM 132290506 + 132290486 132290526 41 CCCCGGAGGAAGCTAGCTTTCCCAGGTGAGTGCCTGGTGCA CCCCGGAGGAAGCTAGCTTTCCTAGGTGAGTGCCTGGTGCA < 41bp 0.708872115697558 0.455352785100642 0.8680358 0.8846875 prediction 0.417744231395115 Functional Loss - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132290506 chr2:132290508 nonsynonymous SNV 0.137 1 23 hm5C_associated_SNPs_90822 0 0 0 0 2 CCDC74A chr2:132290437 3'AG 132290437 Downstream 72bp
chr2 132290508 132290508 1 + C T SKCM 132290506 + 132290486 132290526 41 CCCCGGAGGAAGCTAGCTTTCCCAGGTGAGTGCCTGGTGCA CCCCGGAGGAAGCTAGCTTTCCTAGGTGAGTGCCTGGTGCA < 41bp 0.708872115697558 0.455352785100642 0.8680358 0.8846875 prediction 0.417744231395115 Functional Loss - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132290506 chr2:132290508 nonsynonymous SNV 0.137 1 23 hm5C_associated_SNPs_90822 0 0 0 0 2 CCDC74A chr2:132290510 5'GT 132290510 Upstream 3bp
chr18 29598948 29598948 1 + T C UCEC 29598947 + 29598927 29598967 41 CCTTCGACTGCGCCGTGTGCCTTGAGGTGTTACACCAGCCT CCTTCGACTGCGCCGTGTGCCCTGAGGTGTTACACCAGCCT < 41bp 0.798767821236347 0.589905549139723 0.25392985 0.3137071 prediction 0.417724544193248 Functional Loss - RNF125 ENSG00000101695 CDS Human protein_coding chr18:29598947 chr18:29598948 nonsynonymous SNV 0.968 4 22 hm5C_associated_SNPs_90825 1 0 0 0 1 RNF125 chr18:29598990 5'GT 29598990 Upstream 43bp
chr1 27117319 27117319 1 + G A UCEC 27117316 + 27117296 27117336 41 GTGGTGAAAGGATGTGGCCCCAGGACCCATCCCGGAAGGAG GTGGTGAAAGGATGTGGCCCCAGAACCCATCCCGGAAGGAG < 41bp 0.819801401218795 0.610939437355105 0.592967 0.37888813 prediction 0.417723927727378 Functional Loss - PIGV ENSG00000060642 CDS Human protein_coding chr1:27117316 chr1:27117319 nonsynonymous SNV 0.989 2 24 hm5C_associated_SNPs_90826 0 0 1 0 2 PIGV chr1:27117250 3'AG 27117250 Downstream 70bp
chr1 27117319 27117319 1 + G A UCEC 27117316 + 27117296 27117336 41 GTGGTGAAAGGATGTGGCCCCAGGACCCATCCCGGAAGGAG GTGGTGAAAGGATGTGGCCCCAGAACCCATCCCGGAAGGAG < 41bp 0.819801401218795 0.610939437355105 0.592967 0.37888813 prediction 0.417723927727378 Functional Loss - PIGV ENSG00000060642 CDS Human protein_coding chr1:27117316 chr1:27117319 nonsynonymous SNV 0.989 2 24 hm5C_associated_SNPs_90826 0 0 1 0 2 PIGV chr1:27117384 5'GT 27117384 Upstream 66bp
chr20 58318241 58318241 1 + C T BLCA 58318238 + 58318218 58318258 41 ACTCCCCCTGTGAGGAGGAACAGCAAACTGGCCACCCTGGG ACTCCCCCTGTGAGGAGGAACAGTAAACTGGCCACCCTGGG < 41bp 0.708860242767407 0.491130145255135 0.4978652 0.46876276 prediction 0.417720485534814 Functional Loss - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58318238 chr20:58318241 synonymous SNV . 0 24 hm5C_associated_SNPs_90827 0 0 0 0 2 PHACTR3 chr20:58318162 3'AG 58318162 Downstream 80bp
chr20 58318241 58318241 1 + C T BLCA 58318238 + 58318218 58318258 41 ACTCCCCCTGTGAGGAGGAACAGCAAACTGGCCACCCTGGG ACTCCCCCTGTGAGGAGGAACAGTAAACTGGCCACCCTGGG < 41bp 0.708860242767407 0.491130145255135 0.4978652 0.46876276 prediction 0.417720485534814 Functional Loss - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58318238 chr20:58318241 synonymous SNV . 0 24 hm5C_associated_SNPs_90827 0 0 0 0 2 PHACTR3 chr20:58318323 5'GT 58318323 Upstream 83bp
chr9 129677155 129677155 1 + G A rs558522184 129677152 + 129677132 129677172 41 TGCGCCTGGCCCGGCCCCGGCCCGGCTCGGCGTGGCCCCGG TGCGCCTGGCCCGGCCCCGGCCCAGCTCGGCGTGGCCCCGG < 41bp 0.718137534821772 0.509281636969188 0.1464299 0.13970414 prediction 0.417711795705167 Functional Loss - RALGPS1 ENSG00000136828 UTR5 Human protein_coding chr9:129677152 chr9:129677155 . . 0 24 hm5C_associated_SNPs_90829 0 0 0 0 1 RALGPS1 chr9:129677254 5'GT 129677254 Upstream 100bp
chr19 58115708 58115708 1 + G A BLCA 58115705 + 58115685 58115725 41 CCCAGGAGGAGTGGGAGCTCCTTGATGAGATGCAGAGGCTC CCCAGGAGGAGTGGGAGCTCCTTAATGAGATGCAGAGGCTC < 41bp 0.81671599844267 0.607862207588594 0.26604444 0.13287258 prediction 0.417707581708151 Functional Loss - ZNF530 ENSG00000183647 CDS Human protein_coding chr19:58115705 chr19:58115708 nonsynonymous SNV 0.096 1 24 hm5C_associated_SNPs_90831 0 0 1 0 2 ZNF530 chr19:58115645 3'AG 58115645 Downstream 64bp
chr19 58115708 58115708 1 + G A BLCA 58115705 + 58115685 58115725 41 CCCAGGAGGAGTGGGAGCTCCTTGATGAGATGCAGAGGCTC CCCAGGAGGAGTGGGAGCTCCTTAATGAGATGCAGAGGCTC < 41bp 0.81671599844267 0.607862207588594 0.26604444 0.13287258 prediction 0.417707581708151 Functional Loss - ZNF530 ENSG00000183647 CDS Human protein_coding chr19:58115705 chr19:58115708 nonsynonymous SNV 0.096 1 24 hm5C_associated_SNPs_90831 0 0 1 0 2 ZNF530 chr19:58115774 5'GT 58115774 Upstream 67bp
chr1 22970634 22970634 1 + G A LIHC 22970631 + 22970611 22970651 41 GCTACGGGATCCCAGGGATGCCCGGCCTGCCCGGGGCACCA GCTACGGGATCCCAGGGATGCCCAGCCTGCCCGGGGCACCA < 41bp 0.809118639480932 0.600267618823495 0.25157842 0.097972155 prediction 0.417702041314874 Functional Loss - C1QC ENSG00000159189 CDS Human protein_coding chr1:22970631 chr1:22970634 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_90833 0 0 0 0 1 C1QC chr1:22970697 5'GT 22970697 Upstream 64bp
chr8 2041885 2041885 1 + G A SKCM 2041882 + 2041862 2041902 41 TGGGGATGAGTGAAAATTCCCAGGAATCAGACGTCATAAAA TGGGGATGAGTGAAAATTCCCAGAAATCAGACGTCATAAAA < 41bp 0.804781935259128 0.59593092672439 0.8839909 0.44581038 prediction 0.417702017069477 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2041882 chr8:2041885 nonsynonymous SNV 0.042 3 24 hm5C_associated_SNPs_90834 0 0 0 0 2 MYOM2 chr8:2041797 3'AG 2041797 Downstream 89bp
chr8 2041885 2041885 1 + G A SKCM 2041882 + 2041862 2041902 41 TGGGGATGAGTGAAAATTCCCAGGAATCAGACGTCATAAAA TGGGGATGAGTGAAAATTCCCAGAAATCAGACGTCATAAAA < 41bp 0.804781935259128 0.59593092672439 0.8839909 0.44581038 prediction 0.417702017069477 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2041882 chr8:2041885 nonsynonymous SNV 0.042 3 24 hm5C_associated_SNPs_90834 0 0 0 0 2 MYOM2 chr8:2041918 5'GT 2041918 Upstream 34bp
chr7 889594 889594 1 + G A DLBC 889591 + 889571 889611 41 AAGGGCAAGAGGCACCTCGACGCGCACACAGCCGCCCACTC AAGGGCAAGAGGCACCTCGACGCACACACAGCCGCCCACTC < 41bp 0.708842035892817 0.466889939222804 0.122465014 0.04856503 prediction 0.417684071785634 Functional Loss - SUN1 ENSG00000164828 CDS Human protein_coding chr7:889591 chr7:889594 synonymous SNV . 0 24 hm5C_associated_SNPs_90837 0 0 1 0 2 SUN1 chr7:889560 3'AG 889560 Downstream 35bp
chr7 889594 889594 1 + G A DLBC 889591 + 889571 889611 41 AAGGGCAAGAGGCACCTCGACGCGCACACAGCCGCCCACTC AAGGGCAAGAGGCACCTCGACGCACACACAGCCGCCCACTC < 41bp 0.708842035892817 0.466889939222804 0.122465014 0.04856503 prediction 0.417684071785634 Functional Loss - SUN1 ENSG00000164828 CDS Human protein_coding chr7:889591 chr7:889594 synonymous SNV . 0 24 hm5C_associated_SNPs_90837 0 0 1 0 2 SUN1 chr7:889670 5'GT 889670 Upstream 77bp
chr20 2297878 2297878 1 + G C LUSC 2297874 + 2297854 2297894 41 TGGCCAGTGCTGGGTCTTTGCTGGGACCCTCAACACAGGTA TGGCCAGTGCTGGGTCTTTGCTGGCACCCTCAACACAGGTA < 41bp 0.885236023167896 0.676394268136685 0.16818285 0.019919217 prediction 0.417683510062423 Functional Loss - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2297874 chr20:2297878 synonymous SNV . 0 25 hm5C_associated_SNPs_90838 0 0 0 0 1 TGM3 chr20:2297891 5'GT 2297891 Upstream 14bp
chr11 71498636 71498636 1 + C T ESCA 71498634 + 71498614 71498654 41 TCTTGCTGCAGAGTTTCAAGCGCCGCTTCCTGGCAGCGCGC TCTTGCTGCAGAGTTTCAAGCGTCGCTTCCTGGCAGCGCGC < 41bp 0.784008076805466 0.575173856801051 0.14657384 0.24933818 prediction 0.417668440008829 Functional Loss - FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71498634 chr11:71498636 synonymous SNV . 0 23 hm5C_associated_SNPs_90840 0 0 0 0 1 FAM86C1 chr11:71498678 5'GT 71498678 Upstream 43bp
chr17 36638375 36638375 1 + G A CESC 36638372 + 36638352 36638392 41 CTGGAGGAGTGCCAGCCAGCCACGGAGAACCAGGTGAGTCT CTGGAGGAGTGCCAGCCAGCCACAGAGAACCAGGTGAGTCT < 41bp 0.708832066683796 0.461941118442166 0.39236426 0.3570131 prediction 0.417664133367592 Functional Loss - ARHGAP23 ENSG00000225485 CDS Human other chr17:36638372 chr17:36638375 synonymous SNV . 0 24 hm5C_associated_SNPs_90844 0 0 0 0 1 ARHGAP23 chr17:36638384 5'GT 36638384 Upstream 10bp
chr21 45707437 45707437 1 + G T UCEC 45707433 + 45707413 45707453 41 GGCCAAGCCCCCCAAGAAGCCGGAGAGCAGCGCAGAGCAGC GGCCAAGCCCCCCAAGAAGCCGGATAGCAGCGCAGAGCAGC < 41bp 0.708830506559555 0.495350334202178 0.6853308 0.61696166 prediction 0.417661013119111 Functional Loss - AIRE ENSG00000160224 CDS Human protein_coding chr21:45707433 chr21:45707437 nonsynonymous SNV 0.014 1 25 hm5C_associated_SNPs_90845 0 0 0 0 2 AIRE chr21:45707400 3'AG 45707400 Downstream 38bp
chr21 45707437 45707437 1 + G T UCEC 45707433 + 45707413 45707453 41 GGCCAAGCCCCCCAAGAAGCCGGAGAGCAGCGCAGAGCAGC GGCCAAGCCCCCCAAGAAGCCGGATAGCAGCGCAGAGCAGC < 41bp 0.708830506559555 0.495350334202178 0.6853308 0.61696166 prediction 0.417661013119111 Functional Loss - AIRE ENSG00000160224 CDS Human protein_coding chr21:45707433 chr21:45707437 nonsynonymous SNV 0.014 1 25 hm5C_associated_SNPs_90845 0 0 0 0 2 AIRE chr21:45707474 5'GT 45707474 Upstream 38bp
chr4 144435238 144435238 1 + C T rs200653868 144435236 + 144435216 144435256 41 TCTGCGGCCAGCGCTGGTCCCGCAGACGCCGAGATGGAGGT TCTGCGGCCAGCGCTGGTCCCGTAGACGCCGAGATGGAGGT < 41bp 0.769283088280756 0.560454281263188 0.4635076 0.4188352 prediction 0.417657614035137 Functional Loss - SMARCA5 ENSG00000153147 CDS Human protein_coding chr4:144435236 chr4:144435238 nonsynonymous SNV 0.004 1 23 hm5C_associated_SNPs_90846 0 0 1 0 1 SMARCA5 chr4:144435254 5'GT 144435254 Upstream 17bp
chr10 69959199 69959199 1 + G A UCEC 69959196 + 69959176 69959216 41 GTGCTACCAGATGCCTCCCACAAGATGCTGGTCAGGGAGAC GTGCTACCAGATGCCTCCCACAAAATGCTGGTCAGGGAGAC < 41bp 0.708827784411045 0.471037006811765 0.9215473 0.8042564 prediction 0.417655568822091 Functional Loss - MYPN ENSG00000138347 CDS Human protein_coding chr10:69959196 chr10:69959199 synonymous SNV . 0 24 hm5C_associated_SNPs_90847 0 0 0 0 1 MYPN chr10:69959125 3'AG 69959125 Downstream 75bp
chr2 204735330 204735330 1 + C T LUAD 204735327 + 204735307 204735347 41 AGCAATGCACGTGGCCCAGCCTGCTGTGGTACTGGCCAGCA AGCAATGCACGTGGCCCAGCCTGTTGTGGTACTGGCCAGCA < 41bp 0.708825885810379 0.495702929616853 0.5635554 0.5509613 prediction 0.417651771620759 Functional Loss - CTLA4 ENSG00000163599 CDS Human protein_coding chr2:204735327 chr2:204735330 nonsynonymous SNV 0.689 0 24 hm5C_associated_SNPs_90849 0 0 0 0 2 CTLA4 chr2:204735309 3'AG 204735309 Downstream 22bp
chr2 204735330 204735330 1 + C T LUAD 204735327 + 204735307 204735347 41 AGCAATGCACGTGGCCCAGCCTGCTGTGGTACTGGCCAGCA AGCAATGCACGTGGCCCAGCCTGTTGTGGTACTGGCCAGCA < 41bp 0.708825885810379 0.495702929616853 0.5635554 0.5509613 prediction 0.417651771620759 Functional Loss - CTLA4 ENSG00000163599 CDS Human protein_coding chr2:204735327 chr2:204735330 nonsynonymous SNV 0.689 0 24 hm5C_associated_SNPs_90849 0 0 0 0 2 CTLA4 chr2:204735371 5'GT 204735371 Upstream 42bp
chr1 219347247 219347247 1 + G C LUAD 219347243 + 219347223 219347263 41 GGCATCAGCGATGGCGGCTGCGTCGGGGTCGGTTCTGCAGC GGCATCAGCGATGGCGGCTGCGTCCGGGTCGGTTCTGCAGC < 41bp 0.859916458550753 0.651091474525841 0.31773064 0.268771 prediction 0.417649968049825 Functional Loss - LYPLAL1 ENSG00000143353 CDS Human protein_coding chr1:219347243 chr1:219347247 synonymous SNV . 0 25 hm5C_associated_SNPs_90850 0 0 1 0 1 LYPLAL1 chr1:219347323 5'GT 219347323 Upstream 77bp
chr6 147648398 147648398 1 + G A STAD 147648395 + 147648375 147648415 41 ACCCCGATCTCCTCGTAAATCTCGACAGCCTTCAGGAGGTA ACCCCGATCTCCTCGTAAATCTCAACAGCCTTCAGGAGGTA < 41bp 0.778917624002943 0.570097282427823 0.79900587 0.69904923 prediction 0.417640683150239 Functional Loss - STXBP5 ENSG00000164506 CDS Human protein_coding chr6:147648395 chr6:147648398 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_90853 0 0 1 0 1 STXBP5 chr6:147648412 5'GT 147648412 Upstream 15bp
chr1 230371806 230371806 1 + G T LUAD 230371802 + 230371782 230371822 41 GTGGATCTGCCGGCCACCAGCGTGGTGATCACGTTTCACAA GTGGATCTGCCGGCCACCAGCGTGTTGATCACGTTTCACAA < 41bp 0.708819938956867 0.496308920184039 0.8738197 0.29961753 prediction 0.417639877913735 Functional Loss - GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230371802 chr1:230371806 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_90854 0 0 1 0 2 GALNT2 chr1:230371760 3'AG 230371760 Downstream 47bp
chr1 230371806 230371806 1 + G T LUAD 230371802 + 230371782 230371822 41 GTGGATCTGCCGGCCACCAGCGTGGTGATCACGTTTCACAA GTGGATCTGCCGGCCACCAGCGTGTTGATCACGTTTCACAA < 41bp 0.708819938956867 0.496308920184039 0.8738197 0.29961753 prediction 0.417639877913735 Functional Loss - GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230371802 chr1:230371806 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_90854 0 0 1 0 2 GALNT2 chr1:230371858 5'GT 230371858 Upstream 53bp
chr22 39413824 39413824 1 + C T LUAD 39413821 + 39413801 39413841 41 AGGTGCTTCCTCTCTTGGTTCTGCGACGACATACTGTCTCC AGGTGCTTCCTCTCTTGGTTCTGTGACGACATACTGTCTCC < 41bp 0.723112232663221 0.514293425611586 0.18876219 0.21979386 prediction 0.41763761410327 Functional Loss - APOBEC3C ENSG00000244509 CDS Human protein_coding chr22:39413821 chr22:39413824 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_90855 0 0 1 0 1 APOBEC3C chr22:39413771 3'AG 39413771 Downstream 54bp
chr1 11733700 11733700 1 + G A UCEC 11733697 + 11733677 11733717 41 CTACACCTTCTCAGACTACCCCCGGGGTGTCCGCTACATCC CTACACCTTCTCAGACTACCCCCAGGGTGTCCGCTACATCC < 41bp 0.7088187705293 0.472838554640347 0.27285865 0.059298217 prediction 0.4176375410586 Functional Loss - FBXO6 ENSG00000116663 CDS Human protein_coding chr1:11733697 chr1:11733700 nonsynonymous SNV 0.473 2 24 hm5C_associated_SNPs_90856 0 0 1 0 1 FBXO6 chr1:11733672 3'AG 11733672 Downstream 29bp
chrX 102942348 102942348 1 + G C rs183588287 102942344 + 102942324 102942364 41 CTCGCGTGGTGCTGGGGTTGCTGTGTGAGCGGCCCTCGTGG CTCGCGTGGTGCTGGGGTTGCTGTCTGAGCGGCCCTCGTGG < 41bp 0.87486442128089 0.666048218894175 0.41711602 0.38163942 prediction 0.41763240477343 Functional Loss - MORF4L2-AS1 ENSG00000231154 ncRNA_exonic Human antisense chrX:102942344 chrX:102942348 . . 0 25 hm5C_associated_SNPs_90858 0 0 1 0 1 MORF4L2-AS1 chrX:102942414 5'GT 102942414 Upstream 67bp
chr19 17628573 17628573 1 + C T UCEC 17628570 + 17628550 17628590 41 ACTCCCCGAAGCCACCGCCACAGCGTGTGACCCTCACACTA ACTCCCCGAAGCCACCGCCACAGTGTGTGACCCTCACACTA < 41bp 0.723315407649138 0.514500237272538 0.38109806 0.32838002 prediction 0.4176303407532 Functional Loss - PGLS ENSG00000130313 CDS Human protein_coding chr19:17628570 chr19:17628573 nonsynonymous SNV 0.248 4 24 hm5C_associated_SNPs_90860 0 0 1 0 2 PGLS chr19:17628519 3'AG 17628519 Downstream 55bp
chr19 17628573 17628573 1 + C T UCEC 17628570 + 17628550 17628590 41 ACTCCCCGAAGCCACCGCCACAGCGTGTGACCCTCACACTA ACTCCCCGAAGCCACCGCCACAGTGTGTGACCCTCACACTA < 41bp 0.723315407649138 0.514500237272538 0.38109806 0.32838002 prediction 0.4176303407532 Functional Loss - PGLS ENSG00000130313 CDS Human protein_coding chr19:17628570 chr19:17628573 nonsynonymous SNV 0.248 4 24 hm5C_associated_SNPs_90860 0 0 1 0 2 PGLS chr19:17628659 5'GT 17628659 Upstream 87bp
chr20 43944845 43944845 1 + G T HNSC 43944841 + 43944821 43944861 41 TCCCAGGCCTCTCCCTGCCCCAAGGAGGCGAACAGGGCTCT TCCCAGGCCTCTCCCTGCCCCAAGTAGGCGAACAGGGCTCT < 41bp 0.708814488588494 0.498107568903989 0.48855516 0.14998657 prediction 0.417628977176988 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43944841 chr20:43944845 stopgain 0.997 1 25 hm5C_associated_SNPs_90861 0 0 0 0 1 RBPJL chr20:43944827 3'AG 43944827 Downstream 19bp
chr16 23767768 23767768 1 + C T GBM 23767765 + 23767745 23767785 41 AGATCTCCAGGCATGAGATGCTGCAGGTTGGCAGAAAGCGA AGATCTCCAGGCATGAGATGCTGTAGGTTGGCAGAAAGCGA < 41bp 0.708813792105608 0.483014231659574 0.64983344 0.43530226 prediction 0.417627584211216 Functional Loss - CHP2 ENSG00000166869 CDS Human protein_coding chr16:23767765 chr16:23767768 stopgain 0.793 1 24 hm5C_associated_SNPs_90863 0 0 0 0 2 CHP2 chr16:23767709 3'AG 23767709 Downstream 60bp
chr16 23767768 23767768 1 + C T GBM 23767765 + 23767745 23767785 41 AGATCTCCAGGCATGAGATGCTGCAGGTTGGCAGAAAGCGA AGATCTCCAGGCATGAGATGCTGTAGGTTGGCAGAAAGCGA < 41bp 0.708813792105608 0.483014231659574 0.64983344 0.43530226 prediction 0.417627584211216 Functional Loss - CHP2 ENSG00000166869 CDS Human protein_coding chr16:23767765 chr16:23767768 stopgain 0.793 1 24 hm5C_associated_SNPs_90863 0 0 0 0 2 CHP2 chr16:23767770 5'GT 23767770 Upstream 3bp
chr1 160151560 160151560 1 + C T CESC 160151557 + 160151537 160151577 41 GTTGTGCAGTGGGCGGATCTCATCATCTCCAAGACTCGCCG GTTGTGCAGTGGGCGGATCTCATTATCTCCAAGACTCGCCG < 41bp 0.757986791439899 0.549173396114258 0.013674229 0.015089601 prediction 0.41762679065128 Functional Loss - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160151557 chr1:160151560 synonymous SNV . 0 24 hm5C_associated_SNPs_90864 0 0 0 1 2 ATP1A4 chr1:160151474 3'AG 160151474 Downstream 87bp
chr1 160151560 160151560 1 + C T CESC 160151557 + 160151537 160151577 41 GTTGTGCAGTGGGCGGATCTCATCATCTCCAAGACTCGCCG GTTGTGCAGTGGGCGGATCTCATTATCTCCAAGACTCGCCG < 41bp 0.757986791439899 0.549173396114258 0.013674229 0.015089601 prediction 0.41762679065128 Functional Loss - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160151557 chr1:160151560 synonymous SNV . 0 24 hm5C_associated_SNPs_90864 0 0 0 1 2 ATP1A4 chr1:160151604 5'GT 160151604 Upstream 45bp
chr9 116041256 116041256 1 + C T STAD 116041253 + 116041233 116041273 41 TTTGAAATTGAAGAGCATATCAGCGAGCGACAGGCAGAAGT TTTGAAATTGAAGAGCATATCAGTGAGCGACAGGCAGAAGT < 41bp 0.75791534595258 0.549102896420079 0.5662235 0.4188673 prediction 0.417624899065001 Functional Loss - PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116041253 chr9:116041256 synonymous SNV . 0 24 hm5C_associated_SNPs_90865 0 0 1 0 1 PRPF4 chr9:116041225 3'AG 116041225 Downstream 32bp
chr1 150967160 150967160 1 + C T BLCA 150967158 + 150967138 150967178 41 GGAAGAAATTTGGGAAGTCCCTCTACTCTTCTCTCCAGGTG GGAAGAAATTTGGGAAGTCCCTTTACTCTTCTCTCCAGGTG < 41bp 0.708809716369718 0.411485537098609 0.71728015 0.18785197 prediction 0.417619432739436 Functional Loss - ANXA9 ENSG00000143412 CDS Human protein_coding chr1:150967158 chr1:150967160 synonymous SNV . 0 23 hm5C_associated_SNPs_90868 0 0 0 0 1 ANXA9 chr1:150967175 5'GT 150967175 Upstream 16bp
chr16 31419780 31419780 1 + C T COAD 31419778 + 31419758 31419798 41 GGGCAAGCAGCTCCTTCCAGCACGAGATGTCCCAAGAAGGC GGGCAAGCAGCTCCTTCCAGCATGAGATGTCCCAAGAAGGC < 41bp 0.708808603079605 0.42815653897584 0.15290835 0.16679782 prediction 0.41761720615921 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31419778 chr16:31419780 synonymous SNV . 0 23 hm5C_associated_SNPs_90869 0 0 0 0 2 ITGAD chr16:31419746 3'AG 31419746 Downstream 35bp
chr16 31419780 31419780 1 + C T COAD 31419778 + 31419758 31419798 41 GGGCAAGCAGCTCCTTCCAGCACGAGATGTCCCAAGAAGGC GGGCAAGCAGCTCCTTCCAGCATGAGATGTCCCAAGAAGGC < 41bp 0.708808603079605 0.42815653897584 0.15290835 0.16679782 prediction 0.41761720615921 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31419778 chr16:31419780 synonymous SNV . 0 23 hm5C_associated_SNPs_90869 0 0 0 0 2 ITGAD chr16:31419819 5'GT 31419819 Upstream 40bp
chr16 31419781 31419781 1 + G A SKCM 31419778 + 31419758 31419798 41 GGGCAAGCAGCTCCTTCCAGCACGAGATGTCCCAAGAAGGC GGGCAAGCAGCTCCTTCCAGCACAAGATGTCCCAAGAAGGC < 41bp 0.708808603079605 0.453999024131081 0.15290835 0.14509675 prediction 0.41761720615921 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31419778 chr16:31419781 nonsynonymous SNV 0.947 3 24 hm5C_associated_SNPs_90870 0 0 0 0 2 ITGAD chr16:31419746 3'AG 31419746 Downstream 36bp
chr16 31419781 31419781 1 + G A SKCM 31419778 + 31419758 31419798 41 GGGCAAGCAGCTCCTTCCAGCACGAGATGTCCCAAGAAGGC GGGCAAGCAGCTCCTTCCAGCACAAGATGTCCCAAGAAGGC < 41bp 0.708808603079605 0.453999024131081 0.15290835 0.14509675 prediction 0.41761720615921 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31419778 chr16:31419781 nonsynonymous SNV 0.947 3 24 hm5C_associated_SNPs_90870 0 0 0 0 2 ITGAD chr16:31419819 5'GT 31419819 Upstream 39bp
chr11 60885711 60885711 1 + G A SKCM 60885708 + 60885688 60885728 41 GGCCAGCTGGAGGTCTACCTCAAGGACGGATGGCACATGGT GGCCAGCTGGAGGTCTACCTCAAAGACGGATGGCACATGGT < 41bp 0.833884874045899 0.625077706538959 0.8843303 0.4853558 prediction 0.417614335013881 Functional Loss - CD5 ENSG00000110448 CDS Human protein_coding chr11:60885708 chr11:60885711 synonymous SNV . 0 24 hm5C_associated_SNPs_90871 0 0 0 0 1 CD5 chr11:60885647 3'AG 60885647 Downstream 65bp
chrX 151817747 151817747 1 + G T LUSC 151817745 + 151817725 151817765 41 CAGCAGCTTGTTCCCTGGATCTGCATAAATTCCCTATGGAC CAGCAGCTTGTTCCCTGGATCTTCATAAATTCCCTATGGAC < 41bp 0.708802893424824 0.362526273107456 0.20985746 0.17571807 prediction 0.417605786849648 Functional Loss - GABRQ ENSG00000147402 CDS Human other chrX:151817745 chrX:151817747 synonymous SNV . 0 23 hm5C_associated_SNPs_90872 0 0 0 0 2 GABRQ chrX:151817714 3'AG 151817714 Downstream 34bp
chrX 151817747 151817747 1 + G T LUSC 151817745 + 151817725 151817765 41 CAGCAGCTTGTTCCCTGGATCTGCATAAATTCCCTATGGAC CAGCAGCTTGTTCCCTGGATCTTCATAAATTCCCTATGGAC < 41bp 0.708802893424824 0.362526273107456 0.20985746 0.17571807 prediction 0.417605786849648 Functional Loss - GABRQ ENSG00000147402 CDS Human other chrX:151817745 chrX:151817747 synonymous SNV . 0 23 hm5C_associated_SNPs_90872 0 0 0 0 2 GABRQ chrX:151817796 5'GT 151817796 Upstream 50bp
chr22 50320944 50320944 1 + G A LUAD 50320941 + 50320921 50320961 41 GCCCGACACAGCTGCCCTCCCGCGAAGACCTGTAATGTGCC GCCCGACACAGCTGCCCTCCCGCAAAGACCTGTAATGTGCC < 41bp 0.804260657430475 0.595458534135229 0.113360345 0.026688248 prediction 0.417604246590493 Functional Loss - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50320941 chr22:50320944 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_90873 0 0 1 0 1 CRELD2 chr22:50320903 3'AG 50320903 Downstream 42bp
chr16 58296316 58296316 1 + G A UCEC 58296313 + 58296293 58296333 41 AAGAGGTGAGTGAGGCCCTTCACGATGTTGATTTTCAGCAG AAGAGGTGAGTGAGGCCCTTCACAATGTTGATTTTCAGCAG < 41bp 0.804126213609432 0.595324276634821 0.4566411 0.4443072 prediction 0.41760387394922 Functional Loss - CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58296313 chr16:58296316 nonsynonymous SNV 0.857 1 24 hm5C_associated_SNPs_90874 0 0 1 0 1 CCDC113 chr16:58296289 3'AG 58296289 Downstream 28bp
chr5 36686198 36686198 1 + G A LIHC 36686195 + 36686175 36686215 41 TCCGGACCACCACCAACGTACTGGGAGACTCCCTGGGAGCT TCCGGACCACCACCAACGTACTGAGAGACTCCCTGGGAGCT < 41bp 0.708801782249604 0.470324914336881 0.86851966 0.39652038 prediction 0.417603564499209 Functional Loss - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36686195 chr5:36686198 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_90876 0 0 1 0 1 SLC1A3 chr5:36686167 3'AG 36686167 Downstream 32bp
chr10 104486423 104486423 1 + C T BRCA 104486420 + 104486400 104486440 41 GCTGACCTGTCTGGCTTTAACATCGATGCCCCCCGTTGGGA GCTGACCTGTCTGGCTTTAACATTGATGCCCCCCGTTGGGA < 41bp 0.725363167138397 0.516561553777913 0.4186437 0.2840952 prediction 0.417603226720969 Functional Loss - SFXN2 ENSG00000156398 CDS Human protein_coding chr10:104486420 chr10:104486423 synonymous SNV . 0 24 hm5C_associated_SNPs_90877 0 0 0 0 1 SFXN2 chr10:104486369 3'AG 104486369 Downstream 55bp
chr2 98853161 98853161 1 + G A SKCM 98853158 + 98853138 98853178 41 GCTCCACCTATGTTCCCGTCCTGGACAAGCATGTCGTGTCT GCTCCACCTATGTTCCCGTCCTGAACAAGCATGTCGTGTCT < 41bp 0.762713301212567 0.553921269065558 0.2737171 0.09597945 prediction 0.417584064294019 Functional Loss - VWA3B ENSG00000168658 CDS Human protein_coding chr2:98853158 chr2:98853161 nonsynonymous SNV 0.343 0 24 hm5C_associated_SNPs_90881 0 0 0 0 1 VWA3B chr2:98853193 5'GT 98853193 Upstream 33bp
chr3 53894223 53894223 1 + T C UCEC 53894222 + 53894202 53894242 41 TGCTGGTGGCCACATGGGTGCTGGTGGCAGGGATCTATCTA TGCTGGTGGCCACATGGGTGCCGGTGGCAGGGATCTATCTA < 41bp 0.708787113459823 0.465889675895177 0.40461528 0.6149496 prediction 0.417574226919646 Functional Loss - IL17RB ENSG00000056736 CDS Human protein_coding chr3:53894222 chr3:53894223 nonsynonymous SNV 0.162 3 22 hm5C_associated_SNPs_90886 0 0 1 0 2 IL17RB chr3:53894157 3'AG 53894157 Downstream 67bp
chr3 53894223 53894223 1 + T C UCEC 53894222 + 53894202 53894242 41 TGCTGGTGGCCACATGGGTGCTGGTGGCAGGGATCTATCTA TGCTGGTGGCCACATGGGTGCCGGTGGCAGGGATCTATCTA < 41bp 0.708787113459823 0.465889675895177 0.40461528 0.6149496 prediction 0.417574226919646 Functional Loss - IL17RB ENSG00000056736 CDS Human protein_coding chr3:53894222 chr3:53894223 nonsynonymous SNV 0.162 3 22 hm5C_associated_SNPs_90886 0 0 1 0 2 IL17RB chr3:53894255 5'GT 53894255 Upstream 33bp
chr6 4937824 4937824 1 + T C SKCM 4937823 + 4937803 4937843 41 TGAGAGAAGTCCAGAGTGCTCTGAGCACGGCCGCTGCCGAT TGAGAGAAGTCCAGAGTGCTCCGAGCACGGCCGCTGCCGAT < 41bp 0.803208593079299 0.594423506060223 0.47791207 0.8037622 prediction 0.417570174038152 Functional Loss - CDYL ENSG00000153046 CDS Human protein_coding chr6:4937823 chr6:4937824 nonsynonymous SNV 0.938 4 22 hm5C_associated_SNPs_90888 0 0 1 0 1 CDYL chr6:4937799 3'AG 4937799 Downstream 26bp
chr8 39564346 39564346 1 + G A SKCM 39564343 + 39564323 39564363 41 TGGTAATTGTCAATGCTTCCCTGGACATAGACCTCCAGATT TGGTAATTGTCAATGCTTCCCTGAACATAGACCTCCAGATT < 41bp 0.708782798262236 0.480488396064464 0.056666464 0.01664421 prediction 0.417565596524472 Functional Loss - ADAM18 ENSG00000168619 CDS Human protein_coding chr8:39564343 chr8:39564346 nonsynonymous SNV 0.347 4 24 hm5C_associated_SNPs_90890 0 0 0 0 2 ADAM18 chr8:39564309 3'AG 39564309 Downstream 38bp
chr8 39564346 39564346 1 + G A SKCM 39564343 + 39564323 39564363 41 TGGTAATTGTCAATGCTTCCCTGGACATAGACCTCCAGATT TGGTAATTGTCAATGCTTCCCTGAACATAGACCTCCAGATT < 41bp 0.708782798262236 0.480488396064464 0.056666464 0.01664421 prediction 0.417565596524472 Functional Loss - ADAM18 ENSG00000168619 CDS Human protein_coding chr8:39564343 chr8:39564346 nonsynonymous SNV 0.347 4 24 hm5C_associated_SNPs_90890 0 0 0 0 2 ADAM18 chr8:39564423 5'GT 39564423 Upstream 78bp
chr8 39872850 39872850 1 + G T UCEC 39872846 + 39872826 39872866 41 ACATCCACTCAGCACCTTCCCTGAGGGACTACATCCTGTCA ACATCCACTCAGCACCTTCCCTGATGGACTACATCCTGTCA < 41bp 0.714468071929897 0.505686230460321 0.032832116 0.014088124 prediction 0.417563682939152 Functional Loss - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39872846 chr8:39872850 nonsynonymous SNV 0.137 4 25 hm5C_associated_SNPs_90891 0 0 0 0 1 IDO2 chr8:39872766 3'AG 39872766 Downstream 85bp
chr18 11880999 11880999 1 + G A LGG 11880996 + 11880976 11881016 41 TCTCTCTTGCAGAGGATCAGCACGGCCACCGGTGACGGCAA TCTCTCTTGCAGAGGATCAGCACAGCCACCGGTGACGGCAA < 41bp 0.708777916178634 0.468897030540657 0.5384868 0.3528238 prediction 0.417555832357268 Functional Loss - GNAL ENSG00000141404 CDS Human protein_coding chr18:11880996 chr18:11880999 synonymous SNV . 0 24 hm5C_associated_SNPs_90896 0 0 0 0 1 GNAL chr18:11880988 3'AG 11880988 Downstream 12bp
chr18 2599125 2599125 1 + C T UCEC 2599123 + 2599103 2599143 41 ACTTTGAAATTAAGTTTAATCCCGAGGCTGGTGCCAACTGC ACTTTGAAATTAAGTTTAATCCTGAGGCTGGTGCCAACTGC < 41bp 0.87184284029985 0.663066211809272 0.16424334 0.10185915 prediction 0.417553256981157 Functional Loss - NDC80 ENSG00000080986 CDS Human protein_coding chr18:2599123 chr18:2599125 synonymous SNV . 0 23 hm5C_associated_SNPs_90898 0 0 1 0 1 NDC80 chr18:2599170 5'GT 2599170 Upstream 46bp
chr2 233322730 233322730 1 + G A SKCM 233322727 + 233322707 233322747 41 GGCCTCTTTGAGCCCGGAGACACGAAATATGAGATCCACCG GGCCTCTTTGAGCCCGGAGACACAAAATATGAGATCCACCG < 41bp 0.788132921285483 0.5793566362688 0.28246927 0.35914412 prediction 0.417552570033366 Functional Loss - ALPI ENSG00000163295 CDS Human protein_coding chr2:233322727 chr2:233322730 synonymous SNV . 0 24 hm5C_associated_SNPs_90900 0 0 0 0 1 ALPI chr2:233322708 3'AG 233322708 Downstream 23bp
chr22 24036563 24036563 1 + G A rs2070447 24036560 + 24036540 24036580 41 CTAAGCCTCAACAACTTCTCCTCGGTGCACGTCATCGTCTC CTAAGCCTCAACAACTTCTCCTCAGTGCACGTCATCGTCTC < 41bp 0.708776246220482 0.463124614065418 0.12240559 0.028245121 prediction 0.417552492440964 Functional Loss - RGL4 ENSG00000159496 CDS Human protein_coding chr22:24036560 chr22:24036563 synonymous SNV . 0 24 hm5C_associated_SNPs_90901 0 0 0 0 2 RGL4 chr22:24036534 3'AG 24036534 Downstream 30bp
chr22 24036563 24036563 1 + G A rs2070447 24036560 + 24036540 24036580 41 CTAAGCCTCAACAACTTCTCCTCGGTGCACGTCATCGTCTC CTAAGCCTCAACAACTTCTCCTCAGTGCACGTCATCGTCTC < 41bp 0.708776246220482 0.463124614065418 0.12240559 0.028245121 prediction 0.417552492440964 Functional Loss - RGL4 ENSG00000159496 CDS Human protein_coding chr22:24036560 chr22:24036563 synonymous SNV . 0 24 hm5C_associated_SNPs_90901 0 0 0 0 2 RGL4 chr22:24036637 5'GT 24036637 Upstream 75bp
chr22 24036562 24036562 1 + C T UCEC 24036560 + 24036540 24036580 41 CTAAGCCTCAACAACTTCTCCTCGGTGCACGTCATCGTCTC CTAAGCCTCAACAACTTCTCCTTGGTGCACGTCATCGTCTC < 41bp 0.708776246220482 0.416989291452813 0.12240559 0.05852261 prediction 0.417552492440964 Functional Loss - RGL4 ENSG00000159496 CDS Human protein_coding chr22:24036560 chr22:24036562 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_90902 0 0 0 0 2 RGL4 chr22:24036534 3'AG 24036534 Downstream 29bp
chr22 24036562 24036562 1 + C T UCEC 24036560 + 24036540 24036580 41 CTAAGCCTCAACAACTTCTCCTCGGTGCACGTCATCGTCTC CTAAGCCTCAACAACTTCTCCTTGGTGCACGTCATCGTCTC < 41bp 0.708776246220482 0.416989291452813 0.12240559 0.05852261 prediction 0.417552492440964 Functional Loss - RGL4 ENSG00000159496 CDS Human protein_coding chr22:24036560 chr22:24036562 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_90902 0 0 0 0 2 RGL4 chr22:24036637 5'GT 24036637 Upstream 76bp
chr2 234072469 234072469 1 + G A COAD 234072466 + 234072446 234072486 41 ACATTTACGTGATCGGCACCCAAGAGGACCCCCTGAGTGAG ACATTTACGTGATCGGCACCCAAAAGGACCCCCTGAGTGAG < 41bp 0.807971959396856 0.599197556977457 0.25629395 0.053518474 prediction 0.417548804838799 Functional Loss - INPP5D ENSG00000168918 CDS Human protein_coding chr2:234072466 chr2:234072469 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_90904 0 0 1 0 1 INPP5D chr2:234072549 5'GT 234072549 Upstream 81bp
chr1 36769447 36769447 1 + G A COAD 36769444 + 36769424 36769464 41 GACAAGTGGGTGAGCCGGGGCCGGGGCCGAGGAGCCTTTCC GACAAGTGGGTGAGCCGGGGCCGAGGCCGAGGAGCCTTTCC < 41bp 0.801814077463216 0.5930397465668 0.9225086 0.90030295 prediction 0.417548661792833 Functional Loss - THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36769444 chr1:36769447 synonymous SNV . 0 24 hm5C_associated_SNPs_90905 0 0 1 0 1 THRAP3 chr1:36769397 3'AG 36769397 Downstream 51bp
chr16 57787063 57787063 1 + G A rs147460464 57787060 + 57787040 57787080 41 ACGCGTGTCACCAGGACTGGCACGGTGGCCCGGGACCCTGT ACGCGTGTCACCAGGACTGGCACAGTGGCCCGGGACCCTGT < 41bp 0.820928715189317 0.612158503272474 0.60877573 0.48214325 prediction 0.417540423833685 Functional Loss - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57787060 chr16:57787063 synonymous SNV . 0 24 hm5C_associated_SNPs_90906 0 0 0 0 1 KATNB1 chr16:57786989 3'AG 57786989 Downstream 75bp
chr10 43615023 43615023 1 + C T LGG 43615020 + 43615000 43615040 41 AGTACGCCAAATACGGCTCCCTGCGGGGCTTCCTCCGCGAG AGTACGCCAAATACGGCTCCCTGTGGGGCTTCCTCCGCGAG < 41bp 0.7424817050349 0.533713283966745 0.29472953 0.17254189 prediction 0.41753684213631 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43615020 chr10:43615023 nonsynonymous SNV 0.859 5 24 hm5C_associated_SNPs_90908 0 0 0 0 1 RET chr10:43614979 3'AG 43614979 Downstream 45bp
chr20 1106213 1106213 1 + C T UCEC 1106210 + 1106190 1106230 41 ACAATAAAGACCTGTATGTCCTCCGGTATGAGTATAAGGAT ACAATAAAGACCTGTATGTCCTCTGGTATGAGTATAAGGAT < 41bp 0.708760586316176 0.469527825611906 0.095507294 0.08193886 prediction 0.417521172632351 Functional Loss - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1106210 chr20:1106213 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_90914 0 0 1 0 2 PSMF1 chr20:1106141 3'AG 1106141 Downstream 73bp
chr20 1106213 1106213 1 + C T UCEC 1106210 + 1106190 1106230 41 ACAATAAAGACCTGTATGTCCTCCGGTATGAGTATAAGGAT ACAATAAAGACCTGTATGTCCTCTGGTATGAGTATAAGGAT < 41bp 0.708760586316176 0.469527825611906 0.095507294 0.08193886 prediction 0.417521172632351 Functional Loss - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1106210 chr20:1106213 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_90914 0 0 1 0 2 PSMF1 chr20:1106293 5'GT 1106293 Upstream 81bp
chr6 25517621 25517621 1 + G T LUAD 25517618 + 25517598 25517638 41 ACATCACTGCACAAGGCTTTCAGGATATAGCTGTTGCTATG ACATCACTGCACAAGGCTTTCAGTATATAGCTGTTGCTATG < 41bp 0.708756301891788 0.338204257507274 0.70940435 0.11339998 prediction 0.417512603783576 Functional Loss - CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25517618 chr6:25517621 nonsynonymous SNV 0.979 4 24 hm5C_associated_SNPs_90916 0 0 0 0 2 CARMIL1 chr6:25517575 3'AG 25517575 Downstream 47bp
chr6 25517621 25517621 1 + G T LUAD 25517618 + 25517598 25517638 41 ACATCACTGCACAAGGCTTTCAGGATATAGCTGTTGCTATG ACATCACTGCACAAGGCTTTCAGTATATAGCTGTTGCTATG < 41bp 0.708756301891788 0.338204257507274 0.70940435 0.11339998 prediction 0.417512603783576 Functional Loss - CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25517618 chr6:25517621 nonsynonymous SNV 0.979 4 24 hm5C_associated_SNPs_90916 0 0 0 0 2 CARMIL1 chr6:25517643 5'GT 25517643 Upstream 23bp
chr19 42270108 42270108 1 + T C ACC 42270107 + 42270087 42270127 41 CAAGGAAGTGCTCCTGTCCTCTCAGCTGTGGCCACCGTCGG CAAGGAAGTGCTCCTGTCCTCCCAGCTGTGGCCACCGTCGG < 41bp 0.708753230792697 0.469544614666867 0.08581272 0.08635333 prediction 0.417506461585394 Functional Loss - CEACAM6 ENSG00000086548 CDS Human protein_coding chr19:42270107 chr19:42270108 nonsynonymous SNV 0.272 2 22 hm5C_associated_SNPs_90918 0 0 0 0 2 CEACAM6 chr19:42270091 3'AG 42270091 Downstream 18bp
chr19 42270108 42270108 1 + T C ACC 42270107 + 42270087 42270127 41 CAAGGAAGTGCTCCTGTCCTCTCAGCTGTGGCCACCGTCGG CAAGGAAGTGCTCCTGTCCTCCCAGCTGTGGCCACCGTCGG < 41bp 0.708753230792697 0.469544614666867 0.08581272 0.08635333 prediction 0.417506461585394 Functional Loss - CEACAM6 ENSG00000086548 CDS Human antisense chr19:42270107 chr19:42270108 nonsynonymous SNV 0.272 2 22 hm5C_associated_SNPs_90918 0 0 0 0 2 CEACAM6 chr19:42270207 5'GT 42270207 Upstream 100bp
chr19 42270109 42270109 1 + C T LUAD 42270107 + 42270087 42270127 41 CAAGGAAGTGCTCCTGTCCTCTCAGCTGTGGCCACCGTCGG CAAGGAAGTGCTCCTGTCCTCTTAGCTGTGGCCACCGTCGG < 41bp 0.708753230792697 0.444679807319847 0.08581272 0.05799812 prediction 0.417506461585394 Functional Loss - CEACAM6 ENSG00000086548 CDS Human protein_coding chr19:42270107 chr19:42270109 nonsynonymous SNV 0.260 3 23 hm5C_associated_SNPs_90919 0 0 0 0 2 CEACAM6 chr19:42270091 3'AG 42270091 Downstream 19bp
chr19 42270109 42270109 1 + C T LUAD 42270107 + 42270087 42270127 41 CAAGGAAGTGCTCCTGTCCTCTCAGCTGTGGCCACCGTCGG CAAGGAAGTGCTCCTGTCCTCTTAGCTGTGGCCACCGTCGG < 41bp 0.708753230792697 0.444679807319847 0.08581272 0.05799812 prediction 0.417506461585394 Functional Loss - CEACAM6 ENSG00000086548 CDS Human antisense chr19:42270107 chr19:42270109 nonsynonymous SNV 0.260 3 23 hm5C_associated_SNPs_90919 0 0 0 0 2 CEACAM6 chr19:42270207 5'GT 42270207 Upstream 99bp
chr11 93493015 93493015 1 + C T rs186645027 93493012 + 93492992 93493032 41 GTTTGTCTACCAGTTTTTGTCTCCAGAGACCCAGTAAGTCT GTTTGTCTACCAGTTTTTGTCTCTAGAGACCCAGTAAGTCT < 41bp 0.781689020352366 0.572935894286578 0.9566487 0.92728424 prediction 0.417506252131576 Functional Loss - C11orf54 ENSG00000182919 CDS Human protein_coding chr11:93493012 chr11:93493015 synonymous SNV . 0 24 hm5C_associated_SNPs_90920 0 0 1 0 1 C11orf54 chr11:93493024 5'GT 93493024 Upstream 10bp
chr1 24680928 24680928 1 + G A LUAD 24680925 + 24680905 24680945 41 GCAACCACGTCGCCTTCCTGCTGGACATGGGGGAGCTGGAC GCAACCACGTCGCCTTCCTGCTGAACATGGGGGAGCTGGAC < 41bp 0.785749339829954 0.576997912875849 0.088332415 0.081421524 prediction 0.41750285390821 Functional Loss - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24680925 chr1:24680928 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_90921 0 0 0 0 1 GRHL3 chr1:24680864 3'AG 24680864 Downstream 65bp
chr1 17266547 17266547 1 + C T STAD 17266545 + 17266525 17266565 41 AGGCCCACGAGGACGCCCAGCGCGAGGTGCAGCGGCTGCGG AGGCCCACGAGGACGCCCAGCGTGAGGTGCAGCGGCTGCGG < 41bp 0.836778106038739 0.628027024127251 0.9034046 0.86335135 prediction 0.417502163822975 Functional Loss - CROCC ENSG00000058453 CDS Human protein_coding chr1:17266545 chr1:17266547 synonymous SNV . 0 23 hm5C_associated_SNPs_90922 0 0 0 0 1 CROCC chr1:17266588 5'GT 17266588 Upstream 42bp
chr7 2748752 2748752 1 + G A SKCM 2748749 + 2748729 2748769 41 GCCCGGTTCTCAGGGGAATTCCCGAAGTCGGGGCCCAGCGC GCCCGGTTCTCAGGGGAATTCCCAAAGTCGGGGCCCAGCGC < 41bp 0.830481775801058 0.621735554396264 0.9591131 0.95835555 prediction 0.417492442809588 Functional Loss - AMZ1 ENSG00000174945 CDS Human protein_coding chr7:2748749 chr7:2748752 synonymous SNV . 0 24 hm5C_associated_SNPs_90923 0 0 0 0 1 AMZ1 chr7:2748709 3'AG 2748709 Downstream 44bp
chr16 56976088 56976088 1 + A C CESC 56976084 + 56976064 56976104 41 CATTTAGACCGAGGCCGGTTCAGAACTTCCCAAATGATGGT CATTTAGACCGAGGCCGGTTCAGACCTTCCCAAATGATGGT < 41bp 0.708745622994617 0.289980013586615 0.108045965 0.06345832 prediction 0.417491245989234 Functional Loss - HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56976084 chr16:56976088 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_90924 0 0 1 0 2 HERPUD1 chr16:56976044 3'AG 56976044 Downstream 45bp
chr16 56976088 56976088 1 + A C CESC 56976084 + 56976064 56976104 41 CATTTAGACCGAGGCCGGTTCAGAACTTCCCAAATGATGGT CATTTAGACCGAGGCCGGTTCAGACCTTCCCAAATGATGGT < 41bp 0.708745622994617 0.289980013586615 0.108045965 0.06345832 prediction 0.417491245989234 Functional Loss - HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56976084 chr16:56976088 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_90924 0 0 1 0 2 HERPUD1 chr16:56976149 5'GT 56976149 Upstream 62bp
chr10 38654457 38654457 1 + C T HNSC 38654455 + 38654435 38654475 41 CAAGGAAATCTAATTTCAGCCTCGAGGACTTCCAGCACAGC CAAGGAAATCTAATTTCAGCCTTGAGGACTTCCAGCACAGC < 41bp 0.70874403271023 0.432390551057197 0.08400795 0.02071035 prediction 0.417488065420459 Functional Loss - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38654455 chr10:38654457 . . 0 23 hm5C_associated_SNPs_90925 0 0 1 1 1 HSD17B7P2 chr10:38654362 3'AG 38654362 Downstream 96bp
chr10 38654458 38654458 1 + G T LUAD 38654455 + 38654435 38654475 41 CAAGGAAATCTAATTTCAGCCTCGAGGACTTCCAGCACAGC CAAGGAAATCTAATTTCAGCCTCTAGGACTTCCAGCACAGC < 41bp 0.70874403271023 0.342293834968 0.08400795 0.3527264 prediction 0.417488065420459 Functional Loss - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38654455 chr10:38654458 . . 0 24 hm5C_associated_SNPs_90926 0 0 1 1 2 HSD17B7P2 chr10:38654362 3'AG 38654362 Downstream 97bp
chr10 38654458 38654458 1 + G T LUAD 38654455 + 38654435 38654475 41 CAAGGAAATCTAATTTCAGCCTCGAGGACTTCCAGCACAGC CAAGGAAATCTAATTTCAGCCTCTAGGACTTCCAGCACAGC < 41bp 0.70874403271023 0.342293834968 0.08400795 0.3527264 prediction 0.417488065420459 Functional Loss - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38654455 chr10:38654458 . . 0 24 hm5C_associated_SNPs_90926 0 0 1 1 2 HSD17B7P2 chr10:38654557 5'GT 38654557 Upstream 100bp
chr10 38654459 38654459 1 + A C LUSC 38654455 + 38654435 38654475 41 CAAGGAAATCTAATTTCAGCCTCGAGGACTTCCAGCACAGC CAAGGAAATCTAATTTCAGCCTCGCGGACTTCCAGCACAGC < 41bp 0.70874403271023 0.301553544602158 0.08400795 0.013581723 prediction 0.417488065420459 Functional Loss - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38654455 chr10:38654459 . . 0 25 hm5C_associated_SNPs_90927 0 0 1 0 2 HSD17B7P2 chr10:38654362 3'AG 38654362 Downstream 98bp
chr10 38654459 38654459 1 + A C LUSC 38654455 + 38654435 38654475 41 CAAGGAAATCTAATTTCAGCCTCGAGGACTTCCAGCACAGC CAAGGAAATCTAATTTCAGCCTCGCGGACTTCCAGCACAGC < 41bp 0.70874403271023 0.301553544602158 0.08400795 0.013581723 prediction 0.417488065420459 Functional Loss - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38654455 chr10:38654459 . . 0 25 hm5C_associated_SNPs_90927 0 0 1 0 2 HSD17B7P2 chr10:38654557 5'GT 38654557 Upstream 99bp
chr21 15011886 15011886 1 + G A rs562875736 15011883 + 15011863 15011903 41 ACTTTCTGAAGAACAGAACACTGGAATATCACAAGATGAGA ACTTTCTGAAGAACAGAACACTGAAATATCACAAGATGAGA < 41bp 0.716437482513526 0.507695611978504 0.13870525 0.15692437 prediction 0.417483741070043 Functional Loss - POTED ENSG00000166351 CDS Human protein_coding chr21:15011883 chr21:15011886 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_90929 0 0 0 0 2 POTED chr21:15011836 3'AG 15011836 Downstream 51bp
chr21 15011886 15011886 1 + G A rs562875736 15011883 + 15011863 15011903 41 ACTTTCTGAAGAACAGAACACTGGAATATCACAAGATGAGA ACTTTCTGAAGAACAGAACACTGAAATATCACAAGATGAGA < 41bp 0.716437482513526 0.507695611978504 0.13870525 0.15692437 prediction 0.417483741070043 Functional Loss - POTED ENSG00000166351 CDS Human protein_coding chr21:15011883 chr21:15011886 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_90929 0 0 0 0 2 POTED chr21:15011959 5'GT 15011959 Upstream 74bp
chr17 18682422 18682422 1 + G A SKCM 18682419 + 18682399 18682439 41 ACTGAGTTCGTGCTGTTGACCGTGAAGGAGGAGAAGGAGCA ACTGAGTTCGTGCTGTTGACCGTAAAGGAGGAGAAGGAGCA < 41bp 0.791595440499685 0.582854577904598 0.18526593 0.09376937 prediction 0.417481725190173 Functional Loss - FBXW10 ENSG00000171931 CDS Human protein_coding chr17:18682419 chr17:18682422 synonymous SNV . 0 24 hm5C_associated_SNPs_90932 0 0 0 0 1 FBXW10 chr17:18682392 3'AG 18682392 Downstream 31bp
chr1 74902181 74902181 1 + G A SKCM 74902178 + 74902158 74902198 41 AATCAAGATTTCTACAGTCTCTGGATGAAGACAACATGACA AATCAAGATTTCTACAGTCTCTGAATGAAGACAACATGACA < 41bp 0.736574722975928 0.527834053062475 0.12646359 0.06205654 prediction 0.417481339826905 Functional Loss - FPGT-TNNI3K;TNNI3K ENSG00000116783;ENSG00000259030 CDS Human other chr1:74902178 chr1:74902181 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_90933 0 0 0 0 2 FPGT-TNNI3K;TNNI3K chr1:74902158 3'AG 74902158 Downstream 24bp
chr1 74902181 74902181 1 + G A SKCM 74902178 + 74902158 74902198 41 AATCAAGATTTCTACAGTCTCTGGATGAAGACAACATGACA AATCAAGATTTCTACAGTCTCTGAATGAAGACAACATGACA < 41bp 0.736574722975928 0.527834053062475 0.12646359 0.06205654 prediction 0.417481339826905 Functional Loss - FPGT-TNNI3K;TNNI3K ENSG00000116783;ENSG00000259030 CDS Human other chr1:74902178 chr1:74902181 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_90933 0 0 0 0 2 FPGT-TNNI3K;TNNI3K chr1:74902210 5'GT 74902210 Upstream 30bp
chr3 127786871 127786871 1 + C T UCEC 127786868 + 127786848 127786888 41 AGCAGATGGTGATGAGAGGCCACCGAGAGACCTCCATGGTC AGCAGATGGTGATGAGAGGCCACTGAGAGACCTCCATGGTC < 41bp 0.761830851646223 0.553092571960103 0.32916868 0.27616352 prediction 0.417476559372238 Functional Loss - SEC61A1 ENSG00000058262 CDS Human protein_coding chr3:127786868 chr3:127786871 stopgain 0.952 1 24 hm5C_associated_SNPs_90936 0 0 1 0 2 SEC61A1 chr3:127786826 3'AG 127786826 Downstream 46bp
chr3 127786871 127786871 1 + C T UCEC 127786868 + 127786848 127786888 41 AGCAGATGGTGATGAGAGGCCACCGAGAGACCTCCATGGTC AGCAGATGGTGATGAGAGGCCACTGAGAGACCTCCATGGTC < 41bp 0.761830851646223 0.553092571960103 0.32916868 0.27616352 prediction 0.417476559372238 Functional Loss - SEC61A1 ENSG00000058262 CDS Human protein_coding chr3:127786868 chr3:127786871 stopgain 0.952 1 24 hm5C_associated_SNPs_90936 0 0 1 0 2 SEC61A1 chr3:127786902 5'GT 127786902 Upstream 32bp
chr16 57151476 57151476 1 + G A LUSC 57151473 + 57151453 57151493 41 CTGGCGGGCAGGAGGCTGGACAAGAAGGTAAGGCGGGCAGA CTGGCGGGCAGGAGGCTGGACAAAAAGGTAAGGCGGGCAGA < 41bp 0.82979300736105 0.621056101065353 0.70667875 0.42123935 prediction 0.417473812591392 Functional Loss - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57151473 chr16:57151476 synonymous SNV . 0 24 hm5C_associated_SNPs_90937 0 0 0 0 2 CPNE2 chr16:57151408 3'AG 57151408 Downstream 69bp
chr16 57151476 57151476 1 + G A LUSC 57151473 + 57151453 57151493 41 CTGGCGGGCAGGAGGCTGGACAAGAAGGTAAGGCGGGCAGA CTGGCGGGCAGGAGGCTGGACAAAAAGGTAAGGCGGGCAGA < 41bp 0.82979300736105 0.621056101065353 0.70667875 0.42123935 prediction 0.417473812591392 Functional Loss - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57151473 chr16:57151476 synonymous SNV . 0 24 hm5C_associated_SNPs_90937 0 0 0 0 2 CPNE2 chr16:57151479 5'GT 57151479 Upstream 4bp
chr16 22019662 22019662 1 + G A UCEC 22019659 + 22019639 22019679 41 TCATCTCAGGATGTCTCTTTCTGGCCGCCGATATCTTCGCC TCATCTCAGGATGTCTCTTTCTGACCGCCGATATCTTCGCC < 41bp 0.799590240448308 0.590853682997972 0.89968383 0.70059675 prediction 0.417473114900673 Functional Loss - C16orf52 ENSG00000185716 CDS Human protein_coding chr16:22019659 chr16:22019662 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_90938 0 0 1 1 1 C16orf52 chr16:22019728 5'GT 22019728 Upstream 67bp
chr16 231010 231010 1 + C T PAAD 231008 + 230988 231028 41 CACTGCCTGCTGGTAACCCTCGCCCGGCACTACCCCGGAGA CACTGCCTGCTGGTAACCCTCGTCCGGCACTACCCCGGAGA < 41bp 0.708729296995235 0.469664482782948 0.5041526 0.7213505 prediction 0.417458593990469 Functional Loss - HBQ1 ENSG00000086506 CDS Human protein_coding chr16:231008 chr16:231010 nonsynonymous SNV 0.578 5 23 hm5C_associated_SNPs_90940 0 0 1 0 1 HBQ1 chr16:230979 3'AG 230979 Downstream 32bp
chr1 55523034 55523034 1 + G T SARC 55523031 + 55523011 55523051 41 CAGTTGGGGCCACCAATGCCCAAGACCAGCCGGTGACCCTG CAGTTGGGGCCACCAATGCCCAATACCAGCCGGTGACCCTG < 41bp 0.708728614599424 0.302346440746257 0.16788173 0.044006974 prediction 0.417457229198849 Functional Loss - PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55523031 chr1:55523034 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_90941 0 0 1 0 1 PCSK9 chr1:55523004 3'AG 55523004 Downstream 31bp
chr2 231235650 231235650 1 + G A SKCM 231235647 + 231235627 231235667 41 AGTGCCAGAAAGCCCGGAAGCAAGGAAGGAAAGTGACCAAG AGTGCCAGAAAGCCCGGAAGCAAAGAAGGAAAGTGACCAAG < 41bp 0.822286878288764 0.61356293506631 0.7381655 0.45783067 prediction 0.417447886444908 Functional Loss - SP140L ENSG00000185404 CDS Human protein_coding chr2:231235647 chr2:231235650 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_90944 0 0 0 0 1 SP140L chr2:231235682 5'GT 231235682 Upstream 33bp
chr3 47324584 47324584 1 + G T UCEC 47324581 + 47324561 47324601 41 AAGCTGTGCGACGTGACCCTCAAGGTACCGCGGACTGGGCG AAGCTGTGCGACGTGACCCTCAATGTACCGCGGACTGGGCG < 41bp 0.708722994766574 0.316670485112919 0.90346277 0.65215635 prediction 0.417445989533149 Functional Loss - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47324581 chr3:47324584 nonsynonymous SNV 0.927 1 24 hm5C_associated_SNPs_90945 0 0 1 0 1 KLHL18 chr3:47324584 5'GT 47324584 Upstream 1bp
chr11 1956110 1956110 1 + G A rs143371600 1956107 + 1956087 1956127 41 CTGCACCAGCTGGAGATTGACAAGTTCGAGTTTGGGGAGAA CTGCACCAGCTGGAGATTGACAAATTCGAGTTTGGGGAGAA < 41bp 0.708721443681485 0.480769351092995 0.41509348 0.43567932 prediction 0.417442887362971 Functional Loss - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1956107 chr11:1956110 synonymous SNV . 0 24 hm5C_associated_SNPs_90946 0 0 0 0 1 TNNT3 chr11:1956059 3'AG 1956059 Downstream 52bp
chr6 109621519 109621519 1 + C T UCEC 109621517 + 109621497 109621537 41 GGGTGGCCCAGGCACTCCTCCTCCGGAGGGAGGTTATATTT GGGTGGCCCAGGCACTCCTCCTTCGGAGGGAGGTTATATTT < 41bp 0.708720281119837 0.439608727583727 0.42866075 0.29232728 prediction 0.417440562239674 Functional Loss - CCDC162P ENSG00000203799 ncRNA_exonic Human transcribed_unitary_pseudogene chr6:109621517 chr6:109621519 . . 0 23 hm5C_associated_SNPs_90947 0 0 0 0 1 CCDC162P chr6:109621572 5'GT 109621572 Upstream 54bp
chr15 78458576 78458576 1 + C T SKCM 78458573 + 78458553 78458593 41 TCAGTGCCGTGATGATGCTGCGCCACATGGGACTTTTTGAC TCAGTGCCGTGATGATGCTGCGCTACATGGGACTTTTTGAC < 41bp 0.778288341024819 0.569568744287602 0.050857246 0.083251595 prediction 0.417439193474434 Functional Loss - IDH3A ENSG00000166411 CDS Human protein_coding chr15:78458573 chr15:78458576 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_90948 0 0 1 0 2 IDH3A chr15:78458492 3'AG 78458492 Downstream 85bp
chr15 78458576 78458576 1 + C T SKCM 78458573 + 78458553 78458593 41 TCAGTGCCGTGATGATGCTGCGCCACATGGGACTTTTTGAC TCAGTGCCGTGATGATGCTGCGCTACATGGGACTTTTTGAC < 41bp 0.778288341024819 0.569568744287602 0.050857246 0.083251595 prediction 0.417439193474434 Functional Loss - IDH3A ENSG00000166411 CDS Human protein_coding chr15:78458573 chr15:78458576 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_90948 0 0 1 0 2 IDH3A chr15:78458644 5'GT 78458644 Upstream 69bp
chr1 94946071 94946071 1 + C T GBM 94946069 + 94946049 94946089 41 TGTTTCTGGGCTATTCCTAACTCGACTTCGAAGACCCATTG TGTTTCTGGGCTATTCCTAACTTGACTTCGAAGACCCATTG < 41bp 0.854250559460683 0.645532853766894 0.24297735 0.07302487 prediction 0.417435411387577 Functional Loss - ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94946069 chr1:94946071 stopgain 1.000 1 23 hm5C_associated_SNPs_90949 0 0 1 0 2 ABCD3 chr1:94946020 3'AG 94946020 Downstream 52bp
chr1 94946071 94946071 1 + C T GBM 94946069 + 94946049 94946089 41 TGTTTCTGGGCTATTCCTAACTCGACTTCGAAGACCCATTG TGTTTCTGGGCTATTCCTAACTTGACTTCGAAGACCCATTG < 41bp 0.854250559460683 0.645532853766894 0.24297735 0.07302487 prediction 0.417435411387577 Functional Loss - ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94946069 chr1:94946071 stopgain 1.000 1 23 hm5C_associated_SNPs_90949 0 0 1 0 2 ABCD3 chr1:94946162 5'GT 94946162 Upstream 92bp
chr16 30780226 30780226 1 + C T UCEC 30780224 + 30780204 30780244 41 CGAAGGGAGAGCAAGAAGATCGCGGATGAGGATGCCCTGCG CGAAGGGAGAGCAAGAAGATCGTGGATGAGGATGCCCTGCG < 41bp 0.841192841138098 0.632476260404784 0.8817723 0.8907387 prediction 0.417433161466629 Functional Loss - RNF40 ENSG00000103549 CDS Human protein_coding chr16:30780224 chr16:30780226 nonsynonymous SNV 0.916 4 23 hm5C_associated_SNPs_90952 0 0 1 0 2 RNF40 chr16:30780159 3'AG 30780159 Downstream 68bp
chr16 30780226 30780226 1 + C T UCEC 30780224 + 30780204 30780244 41 CGAAGGGAGAGCAAGAAGATCGCGGATGAGGATGCCCTGCG CGAAGGGAGAGCAAGAAGATCGTGGATGAGGATGCCCTGCG < 41bp 0.841192841138098 0.632476260404784 0.8817723 0.8907387 prediction 0.417433161466629 Functional Loss - RNF40 ENSG00000103549 CDS Human protein_coding chr16:30780224 chr16:30780226 nonsynonymous SNV 0.916 4 23 hm5C_associated_SNPs_90952 0 0 1 0 2 RNF40 chr16:30780308 5'GT 30780308 Upstream 83bp
chr5 140041532 140041532 1 + G A UCEC 140041529 + 140041509 140041549 41 ATGTCTGAAGGGCGGAAAACCAGGCGCTTCAAGGAAACCAA ATGTCTGAAGGGCGGAAAACCAGACGCTTCAAGGAAACCAA < 41bp 0.807276504824344 0.598562754559864 0.8942408 0.32472014 prediction 0.41742750052896 Functional Loss - IK ENSG00000113141 CDS Human protein_coding chr5:140041529 chr5:140041532 synonymous SNV . 0 24 hm5C_associated_SNPs_90954 0 0 1 0 2 IK chr5:140041484 3'AG 140041484 Downstream 49bp
chr5 140041532 140041532 1 + G A UCEC 140041529 + 140041509 140041549 41 ATGTCTGAAGGGCGGAAAACCAGGCGCTTCAAGGAAACCAA ATGTCTGAAGGGCGGAAAACCAGACGCTTCAAGGAAACCAA < 41bp 0.807276504824344 0.598562754559864 0.8942408 0.32472014 prediction 0.41742750052896 Functional Loss - IK ENSG00000113141 CDS Human protein_coding chr5:140041529 chr5:140041532 synonymous SNV . 0 24 hm5C_associated_SNPs_90954 0 0 1 0 2 IK chr5:140041592 5'GT 140041592 Upstream 61bp
chr14 100995528 100995528 1 + C T UCEC 100995525 + 100995505 100995545 41 CCTACCGGATGAGCAGACGGCGGCGCTATGAAGGGCACAAG CCTACCGGATGAGCAGACGGCGGTGCTATGAAGGGCACAAG < 41bp 0.7087136556871 0.490731517276518 0.7342243 0.6134605 prediction 0.4174273113742 Functional Loss - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100995525 chr14:100995528 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_90955 0 0 0 0 1 WDR25 chr14:100995545 5'GT 100995545 Upstream 18bp
chr5 14280513 14280513 1 + G A SKCM 14280510 + 14280490 14280530 41 AGAATACGACAGGAGGATCTCAGGAGACTCATTTCCTATCT AGAATACGACAGGAGGATCTCAGAAGACTCATTTCCTATCT < 41bp 0.758462134708386 0.549752457608104 0.94120944 0.8905134 prediction 0.417419354200564 Functional Loss - TRIO ENSG00000038382 CDS Human protein_coding chr5:14280510 chr5:14280513 synonymous SNV . 0 24 hm5C_associated_SNPs_90959 0 0 1 0 2 TRIO chr5:14280431 3'AG 14280431 Downstream 83bp
chr5 14280513 14280513 1 + G A SKCM 14280510 + 14280490 14280530 41 AGAATACGACAGGAGGATCTCAGGAGACTCATTTCCTATCT AGAATACGACAGGAGGATCTCAGAAGACTCATTTCCTATCT < 41bp 0.758462134708386 0.549752457608104 0.94120944 0.8905134 prediction 0.417419354200564 Functional Loss - TRIO ENSG00000038382 CDS Human protein_coding chr5:14280510 chr5:14280513 synonymous SNV . 0 24 hm5C_associated_SNPs_90959 0 0 1 0 2 TRIO chr5:14280545 5'GT 14280545 Upstream 33bp
chr1 44303982 44303982 1 + C T SKCM 44303980 + 44303960 44304000 41 CTTGATGACGGCCATCTTCCCCCGGTAAGTGCTCCTGTTTC CTTGATGACGGCCATCTTCCCCTGGTAAGTGCTCCTGTTTC < 41bp 0.768509103396894 0.559799743059542 0.23117194 0.16851842 prediction 0.417418720674704 Functional Loss - ST3GAL3 ENSG00000126091 CDS Human protein_coding chr1:44303980 chr1:44303982 stopgain 0.997 3 23 hm5C_associated_SNPs_90960 0 0 1 0 2 ST3GAL3 chr1:44303891 3'AG 44303891 Downstream 92bp
chr1 44303982 44303982 1 + C T SKCM 44303980 + 44303960 44304000 41 CTTGATGACGGCCATCTTCCCCCGGTAAGTGCTCCTGTTTC CTTGATGACGGCCATCTTCCCCTGGTAAGTGCTCCTGTTTC < 41bp 0.768509103396894 0.559799743059542 0.23117194 0.16851842 prediction 0.417418720674704 Functional Loss - ST3GAL3 ENSG00000126091 CDS Human protein_coding chr1:44303980 chr1:44303982 stopgain 0.997 3 23 hm5C_associated_SNPs_90960 0 0 1 0 2 ST3GAL3 chr1:44303983 5'GT 44303983 Upstream 2bp
chr16 31049930 31049930 1 + G A CESC 31049927 + 31049907 31049947 41 AACGCAGTATTCGTGAGCTGCACGACATATTCACTTTTCTG AACGCAGTATTCGTGAGCTGCACAACATATTCACTTTTCTG < 41bp 0.708708761280338 0.465103861002757 0.08421293 0.05640325 prediction 0.417417522560676 Functional Loss - STX4 ENSG00000103496 CDS Human protein_coding chr16:31049927 chr16:31049930 nonsynonymous SNV 0.703 0 24 hm5C_associated_SNPs_90962 0 0 1 0 2 STX4 chr16:31049831 3'AG 31049831 Downstream 100bp
chr16 31049930 31049930 1 + G A CESC 31049927 + 31049907 31049947 41 AACGCAGTATTCGTGAGCTGCACGACATATTCACTTTTCTG AACGCAGTATTCGTGAGCTGCACAACATATTCACTTTTCTG < 41bp 0.708708761280338 0.465103861002757 0.08421293 0.05640325 prediction 0.417417522560676 Functional Loss - STX4 ENSG00000103496 CDS Human protein_coding chr16:31049927 chr16:31049930 nonsynonymous SNV 0.703 0 24 hm5C_associated_SNPs_90962 0 0 1 0 2 STX4 chr16:31049968 5'GT 31049968 Upstream 39bp
chr16 31049929 31049929 1 + C T STAD 31049927 + 31049907 31049947 41 AACGCAGTATTCGTGAGCTGCACGACATATTCACTTTTCTG AACGCAGTATTCGTGAGCTGCATGACATATTCACTTTTCTG < 41bp 0.708708761280338 0.428335225581781 0.08421293 0.19287592 prediction 0.417417522560676 Functional Loss - STX4 ENSG00000103496 CDS Human protein_coding chr16:31049927 chr16:31049929 synonymous SNV . 0 23 hm5C_associated_SNPs_90963 0 0 1 0 2 STX4 chr16:31049831 3'AG 31049831 Downstream 99bp
chr16 31049929 31049929 1 + C T STAD 31049927 + 31049907 31049947 41 AACGCAGTATTCGTGAGCTGCACGACATATTCACTTTTCTG AACGCAGTATTCGTGAGCTGCATGACATATTCACTTTTCTG < 41bp 0.708708761280338 0.428335225581781 0.08421293 0.19287592 prediction 0.417417522560676 Functional Loss - STX4 ENSG00000103496 CDS Human protein_coding chr16:31049927 chr16:31049929 synonymous SNV . 0 23 hm5C_associated_SNPs_90963 0 0 1 0 2 STX4 chr16:31049968 5'GT 31049968 Upstream 40bp
chr11 119058155 119058155 1 + C T BLCA 119058152 + 119058132 119058172 41 AAAGATGAGGGTGGTTTTGGCTTCAGTGTCACCCATGGTGA AAAGATGAGGGTGGTTTTGGCTTTAGTGTCACCCATGGTGA < 41bp 0.737787496467734 0.529079618202451 0.13597253 0.08182198 prediction 0.417415756530567 Functional Loss - PDZD3 ENSG00000172367 CDS Human protein_coding chr11:119058152 chr11:119058155 synonymous SNV . 0 24 hm5C_associated_SNPs_90964 0 0 0 0 1 PDZD3 chr11:119058168 5'GT 119058168 Upstream 14bp
chr3 125635541 125635541 1 + G A rs9841142 125635538 + 125635518 125635558 41 CGCCGCTTTCTGGCGGCGCGCGCGCTGCGCTCCTTCCCCTG CGCCGCTTTCTGGCGGCGCGCGCACTGCGCTCCTTCCCCTG < 41bp 0.816524011986449 0.60782225963291 0.27824464 0.08168933 prediction 0.417403504707078 Functional Loss - FAM86JP ENSG00000171084 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:125635538 chr3:125635541 . . 0 24 hm5C_associated_SNPs_90968 0 0 0 0 1 FAM86JP chr3:125635562 5'GT 125635562 Upstream 22bp
chr10 44788917 44788917 1 + C T rs145407268 44788915 + 44788895 44788935 41 CTGGAGGAGGTGCTGGGATGCGCTGCTGTGGCTGCAGAGAA CTGGAGGAGGTGCTGGGATGCGTTGCTGTGGCTGCAGAGAA < 41bp 0.708699652755078 0.486592905307188 0.715541 0.7646146 prediction 0.417399305510157 Functional Loss - C10orf142 ENSG00000229116 ncRNA_exonic Human lincRNA chr10:44788915 chr10:44788917 . . 0 23 hm5C_associated_SNPs_90970 0 0 0 0 1 C10orf142 chr10:44788937 5'GT 44788937 Upstream 21bp
chr3 137729250 137729250 1 + C T UCEC 137729247 + 137729227 137729267 41 GTGAGGCAGAGTTCAGGCTTCACCGAATGCAGGCCCTATTT GTGAGGCAGAGTTCAGGCTTCACTGAATGCAGGCCCTATTT < 41bp 0.708699250999681 0.497901253586417 0.3029403 0.3748231 prediction 0.417398501999361 Functional Loss - CLDN18 ENSG00000066405 CDS Human protein_coding chr3:137729247 chr3:137729250 synonymous SNV . 0 24 hm5C_associated_SNPs_90971 0 0 0 0 1 CLDN18 chr3:137729287 5'GT 137729287 Upstream 38bp
chr7 35912328 35912328 1 + C T UCEC 35912326 + 35912306 35912346 41 GGTGGTGTTCAGTTGCTGCTCACAATAGTTGATACCCCAGG GGTGGTGTTCAGTTGCTGCTCATAATAGTTGATACCCCAGG < 41bp 0.708698506263783 0.423957717990388 0.15914068 0.26988962 prediction 0.417397012527566 Functional Loss - SEPT7 ENSG00000122545 CDS Human protein_coding chr7:35912326 chr7:35912328 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_90974 0 0 0 0 2 SEPT7 chr7:35912276 3'AG 35912276 Downstream 53bp
chr7 35912328 35912328 1 + C T UCEC 35912326 + 35912306 35912346 41 GGTGGTGTTCAGTTGCTGCTCACAATAGTTGATACCCCAGG GGTGGTGTTCAGTTGCTGCTCATAATAGTTGATACCCCAGG < 41bp 0.708698506263783 0.423957717990388 0.15914068 0.26988962 prediction 0.417397012527566 Functional Loss - SEPT7 ENSG00000122545 CDS Human protein_coding chr7:35912326 chr7:35912328 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_90974 0 0 0 0 2 SEPT7 chr7:35912376 5'GT 35912376 Upstream 49bp
chr3 9804648 9804648 1 - C T SKCM 9804651 - 9804631 9804671 41 GCCGCCTCATCTTCCAGGTGCTGGATGCTGTGAAATACCTG GCCGCCTCATCTTCCAGGTGCTGAATGCTGTGAAATACCTG < 41bp 0.708695181129624 0.455636590863296 0.53253615 0.44867426 prediction 0.417390362259249 Functional Loss - CAMK1 ENSG00000134072 CDS Human protein_coding chr3:9804651 chr3:9804648 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_90978 0 0 1 0 1 CAMK1 chr3:9804598 5'GT 9804598 Upstream 51bp
chr17 42255005 42255005 1 + G A COAD 42255002 + 42254982 42255022 41 GAAACACTGCGCCAACTTCCCTCGGGCCCTGGAAGTCCTGC GAAACACTGCGCCAACTTCCCTCAGGCCCTGGAAGTCCTGC < 41bp 0.708689356873756 0.466252010115964 0.34395146 0.094570875 prediction 0.417378713747512 Functional Loss - ASB16 ENSG00000161664 CDS Human protein_coding chr17:42255002 chr17:42255005 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_90982 0 0 0 0 2 ASB16 chr17:42254977 3'AG 42254977 Downstream 29bp
chr17 42255005 42255005 1 + G A COAD 42255002 + 42254982 42255022 41 GAAACACTGCGCCAACTTCCCTCGGGCCCTGGAAGTCCTGC GAAACACTGCGCCAACTTCCCTCAGGCCCTGGAAGTCCTGC < 41bp 0.708689356873756 0.466252010115964 0.34395146 0.094570875 prediction 0.417378713747512 Functional Loss - ASB16 ENSG00000161664 CDS Human protein_coding chr17:42255002 chr17:42255005 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_90982 0 0 0 0 2 ASB16 chr17:42255090 5'GT 42255090 Upstream 86bp
chr17 73227713 73227713 1 + G A UCEC 73227710 + 73227690 73227730 41 TTCCTCCTGCTGGAGTACGCCTCGGGACTGTTTGCTCATCC TTCCTCCTGCTGGAGTACGCCTCAGGACTGTTTGCTCATCC < 41bp 0.807595078919925 0.598906582292943 0.031040251 0.012931436 prediction 0.417376993253963 Functional Loss - NUP85 ENSG00000125450 CDS Human protein_coding chr17:73227710 chr17:73227713 synonymous SNV . 0 24 hm5C_associated_SNPs_90983 0 0 1 0 2 NUP85 chr17:73227668 3'AG 73227668 Downstream 46bp
chr17 73227713 73227713 1 + G A UCEC 73227710 + 73227690 73227730 41 TTCCTCCTGCTGGAGTACGCCTCGGGACTGTTTGCTCATCC TTCCTCCTGCTGGAGTACGCCTCAGGACTGTTTGCTCATCC < 41bp 0.807595078919925 0.598906582292943 0.031040251 0.012931436 prediction 0.417376993253963 Functional Loss - NUP85 ENSG00000125450 CDS Human protein_coding chr17:73227710 chr17:73227713 synonymous SNV . 0 24 hm5C_associated_SNPs_90983 0 0 1 0 2 NUP85 chr17:73227733 5'GT 73227733 Upstream 21bp
chr14 31349683 31349683 1 + G A BLCA 31349680 + 31349660 31349700 41 AAACGACTAAAGAAAACACCCGAGAAGAAAACTGGCAATAA AAACGACTAAAGAAAACACCCGAAAAGAAAACTGGCAATAA < 41bp 0.771767771408409 0.563079865032945 0.3325076 0.24191657 prediction 0.417375812750927 Functional Loss - COCH ENSG00000100473 CDS Human protein_coding chr14:31349680 chr14:31349683 synonymous SNV . 0 24 hm5C_associated_SNPs_90984 0 0 1 0 1 COCH chr14:31349702 5'GT 31349702 Upstream 20bp
chr11 20483623 20483623 1 + G T UCEC 20483620 + 20483600 20483640 41 TGGGATGATGTCTATGGCTTCAAGATGTCCTGCATGAAGAA TGGGATGATGTCTATGGCTTCAATATGTCCTGCATGAAGAA < 41bp 0.708686415725457 0.325862264678412 0.27142665 0.14384064 prediction 0.417372831450914 Functional Loss - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20483620 chr11:20483623 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_90988 0 0 1 0 2 PRMT3 chr11:20483526 3'AG 20483526 Downstream 98bp
chr11 20483623 20483623 1 + G T UCEC 20483620 + 20483600 20483640 41 TGGGATGATGTCTATGGCTTCAAGATGTCCTGCATGAAGAA TGGGATGATGTCTATGGCTTCAATATGTCCTGCATGAAGAA < 41bp 0.708686415725457 0.325862264678412 0.27142665 0.14384064 prediction 0.417372831450914 Functional Loss - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20483620 chr11:20483623 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_90988 0 0 1 0 2 PRMT3 chr11:20483713 5'GT 20483713 Upstream 91bp
chr1 162762630 162762630 1 + G T SARC 162762626 + 162762606 162762646 41 AGCAACCTGCAGTCGGTCTTCCGGGCCTCCAAGGAACTTAA AGCAACCTGCAGTCGGTCTTCCGGTCCTCCAAGGAACTTAA < 41bp 0.720674000627574 0.511988457780418 0.88437057 0.3909742 prediction 0.417371085694312 Functional Loss - HSD17B7 ENSG00000132196 CDS Human protein_coding chr1:162762626 chr1:162762630 nonsynonymous SNV 0.006 5 25 hm5C_associated_SNPs_90990 0 0 1 0 1 HSD17B7 chr1:162762652 5'GT 162762652 Upstream 23bp
chr9 133748350 133748350 1 + C T UCEC 133748347 + 133748327 133748367 41 TGCAACCGGCAGGAGGTGAACGCCGTGGTGCTGCTGTACAT TGCAACCGGCAGGAGGTGAACGCTGTGGTGCTGCTGTACAT < 41bp 0.765651030082598 0.556969179468078 0.29345 0.29681885 prediction 0.417363701229039 Functional Loss - ABL1 ENSG00000097007 CDS Human protein_coding chr9:133748347 chr9:133748350 synonymous SNV . 0 24 hm5C_associated_SNPs_90991 0 0 1 0 1 ABL1 chr9:133748424 5'GT 133748424 Upstream 75bp
chr11 93104280 93104280 1 + G A UCEC 93104277 + 93104257 93104297 41 AGACAGCAGCTCTGAAATTCCTCGTTTGATATGTGACCCAG AGACAGCAGCTCTGAAATTCCTCATTTGATATGTGACCCAG < 41bp 0.776834778160464 0.568153022618453 0.11071089 0.10411826 prediction 0.417363511084022 Functional Loss - DEUP1 ENSG00000165325 CDS Human protein_coding chr11:93104277 chr11:93104280 nonsynonymous SNV 0.081 0 24 hm5C_associated_SNPs_90992 0 0 0 0 1 DEUP1 chr11:93104204 3'AG 93104204 Downstream 77bp
chr12 113873225 113873225 1 + C T SKCM 113873222 + 113873202 113873242 41 TGGCAGTTGGGGGTGGGGGTCTCCTGGCCGGGGTGGTGGCT TGGCAGTTGGGGGTGGGGGTCTCTTGGCCGGGGTGGTGGCT < 41bp 0.70868106975707 0.489066382071829 0.8871275 0.8961016 prediction 0.41736213951414 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113873222 chr12:113873225 synonymous SNV . 0 24 hm5C_associated_SNPs_90994 0 0 1 0 1 SDSL chr12:113873134 3'AG 113873134 Downstream 92bp
chr7 73483017 73483017 1 + G C LUAD 73483016 + 73482996 73483036 41 GCCTGGGGAAAGCTTGTGGCCGGAAGAGAAAATGAGCTTCC GCCTGGGGAAAGCTTGTGGCCCGAAGAGAAAATGAGCTTCC < 41bp 0.865833826681863 0.657153269827724 0.83938456 0.3419845 prediction 0.417361113708278 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73483016 chr7:73483017 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_90995 0 0 0 0 1 ELN chr7:73482987 3'AG 73482987 Downstream 31bp
chr1 206566189 206566189 1 + G A UCEC 206566186 + 206566166 206566206 41 ACCCCACGCTCCCCTGACTCCACGGCCAACGTTCGCATTGA ACCCCACGCTCCCCTGACTCCACAGCCAACGTTCGCATTGA < 41bp 0.813391881969202 0.604711646903478 0.9068954 0.60291415 prediction 0.417360470131448 Functional Loss - SRGAP2 ENSG00000163486 CDS Human other chr1:206566186 chr1:206566189 synonymous SNV . 0 24 hm5C_associated_SNPs_90996 0 0 1 0 1 SRGAP2 chr1:206566261 5'GT 206566261 Upstream 73bp
chr3 47385056 47385056 1 + C T READ 47385053 + 47385033 47385073 41 TCCCCACTGCAGGTGGAACACTACAACCACCACACAGCCAC TCCCCACTGCAGGTGGAACACTATAACCACCACACAGCCAC < 41bp 0.746088844885303 0.537409019817413 0.9319978 0.73868114 prediction 0.41735965013578 Functional Loss - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47385053 chr3:47385056 synonymous SNV . 0 24 hm5C_associated_SNPs_90997 0 0 1 0 1 KLHL18 chr3:47385045 3'AG 47385045 Downstream 12bp
chr7 2696139 2696139 1 + C T SARC 2696136 + 2696116 2696156 41 CTCATGTTCAGCTCCATCGTCTGCAGCGTCCCGCACACCTG CTCATGTTCAGCTCCATCGTCTGTAGCGTCCCGCACACCTG < 41bp 0.754563753793735 0.545885589329118 0.39808702 0.22208843 prediction 0.417356328929234 Functional Loss - TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2696136 chr7:2696139 synonymous SNV . 0 24 hm5C_associated_SNPs_90998 0 0 0 0 1 TTYH3 chr7:2696168 5'GT 2696168 Upstream 30bp
chr1 159557949 159557949 1 + G A SKCM 159557946 + 159557926 159557966 41 TCTGTTACTGATCATGTAAACTTGATCACACCGCTGGAGAA TCTGTTACTGATCATGTAAACTTAATCACACCGCTGGAGAA < 41bp 0.788786601565126 0.580117455156956 0.08515096 0.10169265 prediction 0.41733829281634 Functional Loss - APCS ENSG00000132703 CDS Human protein_coding chr1:159557946 chr1:159557949 synonymous SNV . 0 24 hm5C_associated_SNPs_91002 0 0 0 0 1 APCS chr1:159557891 3'AG 159557891 Downstream 59bp
chr16 2017795 2017795 1 + G A SKCM 2017792 + 2017772 2017812 41 GTTGTCCACATGAATAAACTCCGGAAAACCATTGGCCGCCT GTTGTCCACATGAATAAACTCCGAAAAACCATTGGCCGCCT < 41bp 0.796195609672585 0.587528134462145 0.2806747 0.055647552 prediction 0.41733495042088 Functional Loss - RNF151 ENSG00000179580 CDS Human protein_coding chr16:2017792 chr16:2017795 synonymous SNV . 0 24 hm5C_associated_SNPs_91005 0 0 0 0 2 RNF151 chr16:2017726 3'AG 2017726 Downstream 70bp
chr16 2017795 2017795 1 + G A SKCM 2017792 + 2017772 2017812 41 GTTGTCCACATGAATAAACTCCGGAAAACCATTGGCCGCCT GTTGTCCACATGAATAAACTCCGAAAAACCATTGGCCGCCT < 41bp 0.796195609672585 0.587528134462145 0.2806747 0.055647552 prediction 0.41733495042088 Functional Loss - RNF151 ENSG00000179580 CDS Human protein_coding chr16:2017792 chr16:2017795 synonymous SNV . 0 24 hm5C_associated_SNPs_91005 0 0 0 0 2 RNF151 chr16:2017822 5'GT 2017822 Upstream 28bp
chr2 33585767 33585767 1 + G A STAD 33585764 + 33585744 33585784 41 AATGTGTTGGCCCCCAATGTCACGAAACAAGAATGCTGCTG AATGTGTTGGCCCCCAATGTCACAAAACAAGAATGCTGCTG < 41bp 0.779790363669076 0.571123106727904 0.3907405 0.24381948 prediction 0.417334513882343 Functional Loss - LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33585764 chr2:33585767 synonymous SNV . 0 24 hm5C_associated_SNPs_91006 0 0 0 0 1 LTBP1 chr2:33585846 5'GT 33585846 Upstream 80bp
chr19 3382241 3382241 1 + G A BLCA 3382238 + 3382218 3382258 41 TGGCCTACTTCGTGCGTGAGCGAGGTGAGGTGTGGTGGCCT TGGCCTACTTCGTGCGTGAGCGAAGTGAGGTGTGGTGGCCT < 41bp 0.708667158370776 0.451325764081358 0.9128096 0.9100454 prediction 0.417334316741553 Functional Loss - NFIC ENSG00000141905 CDS Human protein_coding chr19:3382238 chr19:3382241 nonsynonymous SNV 0.873 0 24 hm5C_associated_SNPs_91007 0 0 1 0 1 NFIC chr19:3382241 5'GT 3382241 Upstream 1bp
chr10 115614776 115614776 1 + G C BRCA 115614772 + 115614752 115614792 41 TATCTGCAGAAGGTGGACGGCTGGGAGCAGGACTTGTCAGT TATCTGCAGAAGGTGGACGGCTGGCAGCAGGACTTGTCAGT < 41bp 0.708667041060717 0.432682590502371 0.4324892 0.20998058 prediction 0.417334082121434 Functional Loss - NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115614772 chr10:115614776 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_91008 0 0 1 0 1 NHLRC2 chr10:115614809 5'GT 115614809 Upstream 34bp
chr1 16073511 16073511 1 + G A LUAD 16073508 + 16073488 16073528 41 TACTGGGCGAGCTCTGGTGTCTCGTGGGCGTCCGCACCCTG TACTGGGCGAGCTCTGGTGTCTCATGGGCGTCCGCACCCTG < 41bp 0.805515815683424 0.596850189509158 0.26162332 0.40659636 prediction 0.417331252348533 Functional Loss - TMEM82 ENSG00000162460 CDS Human protein_coding chr1:16073508 chr1:16073511 nonsynonymous SNV 0.010 1 24 hm5C_associated_SNPs_91009 0 0 0 0 1 TMEM82 chr1:16073549 5'GT 16073549 Upstream 39bp
chr1 160133983 160133983 1 + C T rs147505669 160133980 + 160133960 160134000 41 ATTGTGATTGCTACGGGAGACTCCACAGTGATGGGCAGAAT ATTGTGATTGCTACGGGAGACTCTACAGTGATGGGCAGAAT < 41bp 0.708663508573093 0.485630669398656 0.9291167 0.91148174 prediction 0.417327017146186 Functional Loss - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160133980 chr1:160133983 synonymous SNV . 0 24 hm5C_associated_SNPs_91012 0 0 0 0 1 ATP1A4 chr1:160133946 3'AG 160133946 Downstream 38bp
chr5 131607115 131607115 1 + G A UCEC 131607112 + 131607092 131607132 41 GGCCGCGGAGCCCAAGCAGTCAGGCTCCTTCCGCTACTTGC GGCCGCGGAGCCCAAGCAGTCAGACTCCTTCCGCTACTTGC < 41bp 0.70865989035805 0.46680793470456 0.9047068 0.8766401 prediction 0.4173197807161 Functional Loss - PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131607112 chr5:131607115 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91016 0 0 1 0 1 PDLIM4 chr5:131607159 5'GT 131607159 Upstream 45bp
chrX 48435421 48435421 1 + G A UCEC 48435418 + 48435398 48435438 41 TTTTTTTCCCCCCCAGAAACCAGGGTGGTTATGACCGCTAC TTTTTTTCCCCCCCAGAAACCAGAGTGGTTATGACCGCTAC < 41bp 0.760152147286078 0.551498929844176 0.9155463 0.85614073 prediction 0.417306434883804 Functional Loss - RBM3 ENSG00000102317 CDS Human protein_coding chrX:48435418 chrX:48435421 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_91019 0 0 1 0 2 RBM3 chrX:48435414 3'AG 48435414 Downstream 8bp
chrX 48435421 48435421 1 + G A UCEC 48435418 + 48435398 48435438 41 TTTTTTTCCCCCCCAGAAACCAGGGTGGTTATGACCGCTAC TTTTTTTCCCCCCCAGAAACCAGAGTGGTTATGACCGCTAC < 41bp 0.760152147286078 0.551498929844176 0.9155463 0.85614073 prediction 0.417306434883804 Functional Loss - RBM3 ENSG00000102317 CDS Human protein_coding chrX:48435418 chrX:48435421 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_91019 0 0 1 0 2 RBM3 chrX:48435497 5'GT 48435497 Upstream 77bp
chr1 21797207 21797207 1 + C T COAD 21797205 + 21797185 21797225 41 AAGAGAAGCTTGCAGAGGAGCTCGGGCAAGCTGAGGAGCTC AAGAGAAGCTTGCAGAGGAGCTTGGGCAAGCTGAGGAGCTC < 41bp 0.841971789162738 0.633321840452436 0.4190807 0.5061327 prediction 0.417299897420605 Functional Loss - NBPF3 ENSG00000142794 CDS Human protein_coding chr1:21797205 chr1:21797207 synonymous SNV . 0 23 hm5C_associated_SNPs_91022 0 0 0 0 2 NBPF3 chr1:21797125 3'AG 21797125 Downstream 83bp
chr1 21797207 21797207 1 + C T COAD 21797205 + 21797185 21797225 41 AAGAGAAGCTTGCAGAGGAGCTCGGGCAAGCTGAGGAGCTC AAGAGAAGCTTGCAGAGGAGCTTGGGCAAGCTGAGGAGCTC < 41bp 0.841971789162738 0.633321840452436 0.4190807 0.5061327 prediction 0.417299897420605 Functional Loss - NBPF3 ENSG00000142794 CDS Human protein_coding chr1:21797205 chr1:21797207 synonymous SNV . 0 23 hm5C_associated_SNPs_91022 0 0 0 0 2 NBPF3 chr1:21797227 5'GT 21797227 Upstream 21bp
chr22 41911896 41911896 1 + T C KIRP 41911895 + 41911875 41911915 41 AATCGTGGAATACCACGGGCCTGGTGTAGACTCCATCTCCT AATCGTGGAATACCACGGGCCCGGTGTAGACTCCATCTCCT < 41bp 0.70864929022353 0.461755423729719 0.006822318 0.009802192 prediction 0.417298580447061 Functional Loss - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41911895 chr22:41911896 synonymous SNV . 0 22 hm5C_associated_SNPs_91023 0 0 1 0 1 ACO2 chr22:41911921 5'GT 41911921 Upstream 26bp
chr11 55655604 55655604 1 + C T LGG 55655601 + 55655581 55655621 41 AGCAACATCACTTGGAAAGGCTGCGAAAGGAGGGCGAGGAC AGCAACATCACTTGGAAAGGCTGTGAAAGGAGGGCGAGGAC < 41bp 0.755380661866983 0.546732857443593 0.20995745 0.13076416 prediction 0.417295608846781 Functional Loss - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55655601 chr11:55655604 stopgain 0.002 0 24 hm5C_associated_SNPs_91025 0 0 0 0 1 TRIM51 chr11:55655508 3'AG 55655508 Downstream 97bp
chr9 133364738 133364738 1 + C T GBM 133364735 + 133364715 133364755 41 GCTAGGTATCTACGAGACCCCAGCAGGCACCATCCTTTACC GCTAGGTATCTACGAGACCCCAGTAGGCACCATCCTTTACC < 41bp 0.752047862816395 0.543400921439326 0.023777932 0.022255838 prediction 0.417293882754139 Functional Loss - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133364735 chr9:133364738 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91026 0 0 0 0 1 ASS1 chr9:133364720 3'AG 133364720 Downstream 19bp
chr1 158325656 158325656 1 + G T LUAD 158325653 + 158325633 158325673 41 GCTGTCCTGTGGCCCCAGTCCTGGCCCTGGCCGTCTGCAGC GCTGTCCTGTGGCCCCAGTCCTGTCCCTGGCCGTCTGCAGC < 41bp 0.708645599665857 0.347275527295475 0.81253135 0.26903844 prediction 0.417291199331714 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325653 chr1:158325656 nonsynonymous SNV 0.029 4 24 hm5C_associated_SNPs_91027 0 0 0 0 1 CD1E chr1:158325730 5'GT 158325730 Upstream 75bp
chr20 31831057 31831057 1 + C T rs41290866 31831055 + 31831035 31831075 41 ACCTGCCCCCTCTCCTTTCCCACCAGGCGTGTGTAACATCC ACCTGCCCCCTCTCCTTTCCCATCAGGCGTGTGTAACATCC < 41bp 0.743090219610657 0.534456370278001 0.36833364 0.24695852 prediction 0.417267698665312 Functional Loss - BPIFA1 ENSG00000198183 UTR3 Human protein_coding chr20:31831055 chr20:31831057 . . 0 23 hm5C_associated_SNPs_91035 0 0 0 0 1 BPIFA1 chr20:31830968 3'AG 31830968 Downstream 90bp
chr3 69151039 69151039 1 + G A BLCA 69151036 + 69151016 69151056 41 TGGGAGGAATCGTGGTGGTGCTGGTGTTCACAGGGTTTGTG TGGGAGGAATCGTGGTGGTGCTGATGTTCACAGGGTTTGTG < 41bp 0.803716843912177 0.595085194660942 0.23933578 0.19507298 prediction 0.41726329850247 Functional Loss - ARL6IP5 ENSG00000144746 CDS Human protein_coding chr3:69151036 chr3:69151039 nonsynonymous SNV 0.869 3 24 hm5C_associated_SNPs_91036 0 0 1 0 1 ARL6IP5 chr3:69150990 3'AG 69150990 Downstream 50bp
chr4 71459090 71459090 1 + T C COAD 71459089 + 71459069 71459109 41 TGATACTGATCCTATGCCTCCTGGAAATGAGTTTTGCAGTG TGATACTGATCCTATGCCTCCCGGAAATGAGTTTTGCAGTG < 41bp 0.807911255852061 0.599283680729767 0.20100483 0.35187805 prediction 0.417255150244588 Functional Loss - AMBN ENSG00000178522 CDS Human protein_coding chr4:71459089 chr4:71459090 nonsynonymous SNV 0.018 3 22 hm5C_associated_SNPs_91039 0 0 0 0 2 AMBN chr4:71459044 3'AG 71459044 Downstream 47bp
chr4 71459090 71459090 1 + T C COAD 71459089 + 71459069 71459109 41 TGATACTGATCCTATGCCTCCTGGAAATGAGTTTTGCAGTG TGATACTGATCCTATGCCTCCCGGAAATGAGTTTTGCAGTG < 41bp 0.807911255852061 0.599283680729767 0.20100483 0.35187805 prediction 0.417255150244588 Functional Loss - AMBN ENSG00000178522 CDS Human protein_coding chr4:71459089 chr4:71459090 nonsynonymous SNV 0.018 3 22 hm5C_associated_SNPs_91039 0 0 0 0 2 AMBN chr4:71459112 5'GT 71459112 Upstream 23bp
chr4 3415891 3415891 1 + C T COAD 3415888 + 3415868 3415908 41 GCGTGCAGAGCTGCCGGCGCCTGCGTGAGAGGAGGGTCGCC GCGTGCAGAGCTGCCGGCGCCTGTGTGAGAGGAGGGTCGCC < 41bp 0.708627046616147 0.496411191080572 0.7631608 0.15793896 prediction 0.417254093232294 Functional Loss - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3415888 chr4:3415891 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_91040 0 0 1 0 1 RGS12 chr4:3415968 5'GT 3415968 Upstream 78bp
chr12 132425913 132425913 1 + G A rs142044204 132425910 + 132425890 132425930 41 ACCTATTGCTACCTGCTGCCCACGTTTGCCTTTGCGCACAA ACCTATTGCTACCTGCTGCCCACATTTGCCTTTGCGCACAA < 41bp 0.708625114919779 0.470674000404787 0.020416975 0.019839317 prediction 0.417250229839558 Functional Loss - PUS1 ENSG00000177192 CDS Human protein_coding chr12:132425910 chr12:132425913 synonymous SNV . 0 24 hm5C_associated_SNPs_91042 1 0 1 0 1 PUS1 chr12:132425837 3'AG 132425837 Downstream 77bp
chr22 50633336 50633336 1 + G T LIHC 50633334 + 50633314 50633354 41 CTGTGGCTGTTGCAGACCATCCGGGAGGTGCAGCCTGACGT CTGTGGCTGTTGCAGACCATCCTGGAGGTGCAGCCTGACGT < 41bp 0.708617735686687 0.346240292034517 0.9111763 0.19856757 prediction 0.417235471373373 Functional Loss - TRABD ENSG00000170638 CDS Human protein_coding chr22:50633334 chr22:50633336 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_91044 0 0 1 0 1 TRABD chr22:50633329 3'AG 50633329 Downstream 8bp
chr4 17635472 17635472 1 - C A rs569401398 17635476 - 17635456 17635496 41 GACGTGCCCAGCCGCGTGGTCAGCGTGCCGAACCTCGCCTC GACGTGCCCAGCCGCGTGGTCAGCTTGCCGAACCTCGCCTC < 41bp 0.720213276253753 0.511600257156632 0.45745918 0.24384454 prediction 0.417226038194242 Functional Loss - FAM184B ENSG00000047662 CDS Human protein_coding chr4:17635476 chr4:17635472 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_91045 0 0 0 0 1 FAM184B chr4:17635511 3'AG 17635511 Downstream 40bp
chr6 170176736 170176736 1 + G A UCS 170176733 + 170176713 170176753 41 GGTGGAAAGGACGCTGCGGTCTCGCCAGCGGCAGAACTACC GGTGGAAAGGACGCTGCGGTCTCACCAGCGGCAGAACTACC < 41bp 0.708612581017794 0.465203035243069 0.066780746 0.0386962 prediction 0.417225162035589 Functional Loss - ERMARD ENSG00000130023 CDS Human protein_coding chr6:170176733 chr6:170176736 nonsynonymous SNV 0.192 4 24 hm5C_associated_SNPs_91046 0 0 0 0 1 ERMARD chr6:170176769 5'GT 170176769 Upstream 34bp
chr12 29469890 29469890 1 + C T ESCA 29469887 + 29469867 29469907 41 AGTACTGGAATGCGGTCAGCCACCGGGCCCCTGCCATTATC AGTACTGGAATGCGGTCAGCCACTGGGCCCCTGCCATTATC < 41bp 0.768741218385784 0.560128684983535 0.0181382 0.009906262 prediction 0.417225066804498 Functional Loss - FAR2 ENSG00000064763 CDS Human protein_coding chr12:29469887 chr12:29469890 nonsynonymous SNV 0.654 0 24 hm5C_associated_SNPs_91047 0 0 0 0 1 FAR2 chr12:29469945 5'GT 29469945 Upstream 56bp
chr10 13217572 13217572 1 + C T rs150895215 13217570 + 13217550 13217590 41 CCAACCCCTACAGACGATTTCTCGGAACAAACCTAGTGGGA CCAACCCCTACAGACGATTTCTTGGAACAAACCTAGTGGGA < 41bp 0.708611787339141 0.417925201547916 0.0983063 0.059613675 prediction 0.417223574678282 Functional Loss - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13217570 chr10:13217572 nonsynonymous SNV 0.043 1 23 hm5C_associated_SNPs_91048 0 0 1 0 1 MCM10 chr10:13217510 3'AG 13217510 Downstream 63bp
chr10 13217573 13217573 1 + G A COAD 13217570 + 13217550 13217590 41 CCAACCCCTACAGACGATTTCTCGGAACAAACCTAGTGGGA CCAACCCCTACAGACGATTTCTCAGAACAAACCTAGTGGGA < 41bp 0.708611787339141 0.460850872402601 0.0983063 0.072927564 prediction 0.417223574678282 Functional Loss - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13217570 chr10:13217573 nonsynonymous SNV 0.055 0 24 hm5C_associated_SNPs_91049 0 0 1 0 1 MCM10 chr10:13217510 3'AG 13217510 Downstream 64bp
chr18 14837242 14837242 1 + G T UCEC 14837240 + 14837220 14837260 41 CAAAGACAGTAACTGGACAACAGGAACGTGATATTGGCATT CAAAGACAGTAACTGGACAACATGAACGTGATATTGGCATT < 41bp 0.708611289368157 0.368467244171089 0.34650564 0.060715765 prediction 0.417222578736313 Functional Loss - ANKRD30B ENSG00000180777 CDS Human protein_coding chr18:14837240 chr18:14837242 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_91051 0 0 0 0 2 ANKRD30B chr18:14837210 3'AG 14837210 Downstream 33bp
chr18 14837242 14837242 1 + G T UCEC 14837240 + 14837220 14837260 41 CAAAGACAGTAACTGGACAACAGGAACGTGATATTGGCATT CAAAGACAGTAACTGGACAACATGAACGTGATATTGGCATT < 41bp 0.708611289368157 0.368467244171089 0.34650564 0.060715765 prediction 0.417222578736313 Functional Loss - ANKRD30B ENSG00000180777 CDS Human protein_coding chr18:14837240 chr18:14837242 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_91051 0 0 0 0 2 ANKRD30B chr18:14837288 5'GT 14837288 Upstream 47bp
chr15 58837997 58837997 1 + C T SARC 58837995 + 58837975 58838015 41 TGCCCCCAGCAATCGTCTTTCTCCAGATGATGCCAATTTTG TGCCCCCAGCAATCGTCTTTCTTCAGATGATGCCAATTTTG < 41bp 0.708601599767127 0.3977764246214 0.9291862 0.2703424 prediction 0.417203199534253 Functional Loss - LIPC ENSG00000166035 CDS Human protein_coding chr15:58837995 chr15:58837997 nonsynonymous SNV 0.907 5 23 hm5C_associated_SNPs_91060 0 0 0 0 1 LIPC chr15:58837941 3'AG 58837941 Downstream 57bp
chr15 58837998 58837998 1 + C T SARC 58837995 + 58837975 58838015 41 TGCCCCCAGCAATCGTCTTTCTCCAGATGATGCCAATTTTG TGCCCCCAGCAATCGTCTTTCTCTAGATGATGCCAATTTTG < 41bp 0.708601599767127 0.475489401844323 0.9291862 0.35779858 prediction 0.417203199534253 Functional Loss - LIPC ENSG00000166035 CDS Human protein_coding chr15:58837995 chr15:58837998 nonsynonymous SNV 0.908 5 24 hm5C_associated_SNPs_91061 0 0 0 0 1 LIPC chr15:58837941 3'AG 58837941 Downstream 58bp
chr5 157164914 157164914 1 + A T SKCM 157164912 + 157164892 157164932 41 CAGGGAACTCTTGCAGCAGACAAGAATGAGATTTTGTTTTC CAGGGAACTCTTGCAGCAGACATGAATGAGATTTTGTTTTC < 41bp 0.737151915080038 0.528552116698021 0.36553514 0.29079813 prediction 0.417199596764034 Functional Loss - THG1L ENSG00000113272 CDS Human protein_coding chr5:157164912 chr5:157164914 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_91063 0 0 1 0 2 THG1L chr5:157164895 3'AG 157164895 Downstream 20bp
chr5 157164914 157164914 1 + A T SKCM 157164912 + 157164892 157164932 41 CAGGGAACTCTTGCAGCAGACAAGAATGAGATTTTGTTTTC CAGGGAACTCTTGCAGCAGACATGAATGAGATTTTGTTTTC < 41bp 0.737151915080038 0.528552116698021 0.36553514 0.29079813 prediction 0.417199596764034 Functional Loss - THG1L ENSG00000113272 CDS Human protein_coding chr5:157164912 chr5:157164914 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_91063 0 0 1 0 2 THG1L chr5:157165002 5'GT 157165002 Upstream 89bp
chr17 73517849 73517849 1 + C T SKCM 73517846 + 73517826 73517866 41 CAACCCAAGAGTCTGGCAGCCTCCAGCCCACCTCCCTGCAG CAACCCAAGAGTCTGGCAGCCTCTAGCCCACCTCCCTGCAG < 41bp 0.749223092878438 0.540629222454378 0.92827654 0.43803075 prediction 0.41718774084812 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73517846 chr17:73517849 synonymous SNV . 0 24 hm5C_associated_SNPs_91068 0 0 1 1 1 TSEN54 chr17:73517786 3'AG 73517786 Downstream 64bp
chr16 840190 840190 1 + A C rs147014783 840186 + 840166 840206 41 CTTCCCCACAGGGCTCTCTCCTCCACGTCCCATGGCGAGGC CTTCCCCACAGGGCTCTCTCCTCCCCGTCCCATGGCGAGGC < 41bp 0.70859379265092 0.299864187012966 0.94326556 0.7860818 prediction 0.417187585301841 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:840186 chr16:840190 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_91069 0 0 1 0 2 CHTF18 chr16:840177 3'AG 840177 Downstream 14bp
chr16 840190 840190 1 + A C rs147014783 840186 + 840166 840206 41 CTTCCCCACAGGGCTCTCTCCTCCACGTCCCATGGCGAGGC CTTCCCCACAGGGCTCTCTCCTCCCCGTCCCATGGCGAGGC < 41bp 0.70859379265092 0.299864187012966 0.94326556 0.7860818 prediction 0.417187585301841 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:840186 chr16:840190 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_91069 0 0 1 0 2 CHTF18 chr16:840269 5'GT 840269 Upstream 80bp
chr1 59844452 59844452 1 + G A LUSC 59844449 + 59844429 59844469 41 AGAGATTTGCTGGGATAAGGCGGGACATTTCTTTGATCTCC AGAGATTTGCTGGGATAAGGCGGAACATTTCTTTGATCTCC < 41bp 0.764305685820049 0.555717493725867 0.6855549 0.3789524 prediction 0.417176384188364 Functional Loss - FGGY ENSG00000172456 CDS Human protein_coding chr1:59844449 chr1:59844452 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_91074 0 0 0 0 2 FGGY chr1:59844421 3'AG 59844421 Downstream 32bp
chr1 59844452 59844452 1 + G A LUSC 59844449 + 59844429 59844469 41 AGAGATTTGCTGGGATAAGGCGGGACATTTCTTTGATCTCC AGAGATTTGCTGGGATAAGGCGGAACATTTCTTTGATCTCC < 41bp 0.764305685820049 0.555717493725867 0.6855549 0.3789524 prediction 0.417176384188364 Functional Loss - FGGY ENSG00000172456 CDS Human protein_coding chr1:59844449 chr1:59844452 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_91074 0 0 0 0 2 FGGY chr1:59844509 5'GT 59844509 Upstream 58bp
chr4 156618049 156618049 1 + G A SKCM 156618046 + 156618026 156618066 41 TGCACGAAGCTCAAGGATCTCAAGATCACAGGAGAGTGTCC TGCACGAAGCTCAAGGATCTCAAAATCACAGGAGAGTGTCC < 41bp 0.78033439658407 0.571748412830522 0.2831096 0.16867593 prediction 0.417171967507094 Functional Loss - GUCY1A3 ENSG00000164116 CDS Human protein_coding chr4:156618046 chr4:156618049 synonymous SNV . 0 24 hm5C_associated_SNPs_91075 0 0 0 0 1 GUCY1A3 chr4:156617958 3'AG 156617958 Downstream 92bp
chr9 131038983 131038983 1 + T C BLCA 131038982 + 131038962 131039002 41 CTTTCCCCTCGGATTCCTCTCTAGGACTGAACCAAGACTTA CTTTCCCCTCGGATTCCTCTCCAGGACTGAACCAAGACTTA < 41bp 0.791661690687108 0.583075980920585 0.5781524 0.5860349 prediction 0.417171419533046 Functional Loss - SWI5 ENSG00000175854 CDS Human protein_coding chr9:131038982 chr9:131038983 synonymous SNV . 0 22 hm5C_associated_SNPs_91076 0 0 1 0 1 SWI5 chr9:131039034 5'GT 131039034 Upstream 52bp
chr19 52084667 52084667 1 + G A UCEC 52084664 + 52084644 52084684 41 GCATCAGTGTCATTTGAGGACGTGACCGTGGACTTCAGCAG GCATCAGTGTCATTTGAGGACGTAACCGTGGACTTCAGCAG < 41bp 0.80908504497202 0.600499472996724 0.45852378 0.34539992 prediction 0.417171143950592 Functional Loss - ZNF175 ENSG00000105497 CDS Human protein_coding chr19:52084664 chr19:52084667 synonymous SNV . 0 24 hm5C_associated_SNPs_91077 0 0 1 0 1 ZNF175 chr19:52084644 3'AG 52084644 Downstream 24bp
chr1 2430252 2430252 1 + G A STAD 2430249 + 2430229 2430269 41 ACTGCAGCAGGGAGCAGACCCGCGTGGTGGACGACAACGGT ACTGCAGCAGGGAGCAGACCCGCATGGTGGACGACAACGGT < 41bp 0.708583636379381 0.463265804965467 0.4399614 0.3904671 prediction 0.417167272758763 Functional Loss - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2430249 chr1:2430252 nonsynonymous SNV 0.966 3 24 hm5C_associated_SNPs_91079 0 0 0 0 1 PLCH2 chr1:2430267 5'GT 2430267 Upstream 16bp
chr1 2430251 2430251 1 + C T STAD 2430249 + 2430229 2430269 41 ACTGCAGCAGGGAGCAGACCCGCGTGGTGGACGACAACGGT ACTGCAGCAGGGAGCAGACCCGTGTGGTGGACGACAACGGT < 41bp 0.708583636379381 0.450707355846875 0.4399614 0.419995 prediction 0.417167272758763 Functional Loss - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2430249 chr1:2430251 synonymous SNV . 0 23 hm5C_associated_SNPs_91080 0 0 0 0 1 PLCH2 chr1:2430267 5'GT 2430267 Upstream 17bp
chr17 12883521 12883521 1 + C T UCEC 12883518 + 12883498 12883538 41 CCCCAGCCCCAGCCAGCCGCCTGCAGACCAGAGTCCTCACA CCCCAGCCCCAGCCAGCCGCCTGTAGACCAGAGTCCTCACA < 41bp 0.748218815694203 0.539635842799046 0.13424325 0.05202043 prediction 0.417165945790313 Functional Loss - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12883518 chr17:12883521 nonsynonymous SNV 0.763 1 24 hm5C_associated_SNPs_91081 0 0 0 0 1 ARHGAP44 chr17:12883550 5'GT 12883550 Upstream 30bp
chr19 50962496 50962496 1 + G A SKCM 50962493 + 50962473 50962513 41 CAGGCGGCCCGCTCCGACTCCGGGGAGTACGAGCTGAGCGT CAGGCGGCCCGCTCCGACTCCGGAGAGTACGAGCTGAGCGT < 41bp 0.830426502144373 0.621845257686574 0.91097534 0.8440794 prediction 0.417162488915598 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50962493 chr19:50962496 synonymous SNV . 0 24 hm5C_associated_SNPs_91085 0 0 0 0 1 MYBPC2 chr19:50962563 5'GT 50962563 Upstream 68bp
chr3 125643885 125643885 1 + G T UCEC 125643883 + 125643863 125643903 41 TGGCTGCCTGCCGGGAGCACCAGCGGGCTCCTGAGGTCTAT TGGCTGCCTGCCGGGAGCACCATCGGGCTCCTGAGGTCTAT < 41bp 0.708581072733385 0.357004299362842 0.8586451 0.16717464 prediction 0.417162145466771 Functional Loss - FAM86JP ENSG00000171084 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:125643883 chr3:125643885 . . 0 23 hm5C_associated_SNPs_91086 0 0 0 0 2 FAM86JP chr3:125643809 3'AG 125643809 Downstream 77bp
chr3 125643885 125643885 1 + G T UCEC 125643883 + 125643863 125643903 41 TGGCTGCCTGCCGGGAGCACCAGCGGGCTCCTGAGGTCTAT TGGCTGCCTGCCGGGAGCACCATCGGGCTCCTGAGGTCTAT < 41bp 0.708581072733385 0.357004299362842 0.8586451 0.16717464 prediction 0.417162145466771 Functional Loss - FAM86JP ENSG00000171084 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:125643883 chr3:125643885 . . 0 23 hm5C_associated_SNPs_91086 0 0 0 0 2 FAM86JP chr3:125643958 5'GT 125643958 Upstream 74bp
chr4 55141108 55141108 1 + G T UCEC 55141105 + 55141085 55141125 41 GATGCAGCTGCCTTATGACTCAAGATGGGAGTTTCCAAGAG GATGCAGCTGCCTTATGACTCAATATGGGAGTTTCCAAGAG < 41bp 0.70858023756578 0.37707315137202 0.57016784 0.18657026 prediction 0.417160475131561 Functional Loss - PDGFRA ENSG00000134853;ENSG00000145216 CDS Human other chr4:55141105 chr4:55141108 nonsynonymous SNV 0.199 4 24 hm5C_associated_SNPs_91087 1 0 0 0 2 PDGFRA chr4:55141092 3'AG 55141092 Downstream 17bp
chr4 55141108 55141108 1 + G T UCEC 55141105 + 55141085 55141125 41 GATGCAGCTGCCTTATGACTCAAGATGGGAGTTTCCAAGAG GATGCAGCTGCCTTATGACTCAATATGGGAGTTTCCAAGAG < 41bp 0.70858023756578 0.37707315137202 0.57016784 0.18657026 prediction 0.417160475131561 Functional Loss - PDGFRA ENSG00000134853;ENSG00000145216 CDS Human other chr4:55141105 chr4:55141108 nonsynonymous SNV 0.199 4 24 hm5C_associated_SNPs_91087 1 0 0 0 2 PDGFRA chr4:55141140 5'GT 55141140 Upstream 33bp
chr7 137801444 137801444 1 + C T rs1872930 137801442 + 137801422 137801462 41 CTGAACAGATTTTTCACTCCCACGAGTGCCAAGACGGTGCA CTGAACAGATTTTTCACTCCCATGAGTGCCAAGACGGTGCA < 41bp 0.811424258977022 0.602846081566957 0.44252995 0.50615233 prediction 0.417156354820129 Functional Loss - AKR1D1 ENSG00000122787 UTR3 Human protein_coding chr7:137801442 chr7:137801444 . . 0 23 hm5C_associated_SNPs_91090 1 0 0 2 1 AKR1D1 chr7:137801366 3'AG 137801366 Downstream 79bp
chr14 105715327 105715327 1 + A C rs2816604 105715323 + 105715303 105715343 41 CAGCCCGCCCAGCGCCCCCGCGCCAGCGCCGCCGCCGCCCG CAGCCCGCCCAGCGCCCCCGCGCCCGCGCCGCCGCCGCCCG < 41bp 0.933021463964915 0.724449533818999 0.759513 0.43006894 prediction 0.417143860291834 Functional Loss - BTBD6 ENSG00000184887 CDS Human protein_coding chr14:105715323 chr14:105715327 synonymous SNV . 0 25 hm5C_associated_SNPs_91092 0 0 0 0 1 BTBD6 chr14:105715422 5'GT 105715422 Upstream 96bp
chr16 19475108 19475108 1 + G T UCEC 19475104 + 19475084 19475124 41 AATCCTGATTCCAGGCTTATCGGAGATCCAAGAACAGCCTG AATCCTGATTCCAGGCTTATCGGATATCCAAGAACAGCCTG < 41bp 0.763108195523767 0.554536829918718 0.9201833 0.8637228 prediction 0.417142731210098 Functional Loss - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19475104 chr16:19475108 nonsynonymous SNV 0.153 4 25 hm5C_associated_SNPs_91093 0 0 1 0 1 TMC5 chr16:19475098 3'AG 19475098 Downstream 11bp
chr19 42402170 42402170 1 + G T rs182824002 42402167 + 42402147 42402187 41 CGGCCTTCCCGGGGCAGCCTCGGGGCTAAGGGCCGGGGTGG CGGCCTTCCCGGGGCAGCCTCGGTGCTAAGGGCCGGGGTGG < 41bp 0.897258261529848 0.688692463447197 0.95397025 0.9103602 prediction 0.417131596165301 Functional Loss - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42402167 chr19:42402170 synonymous SNV . 0 24 hm5C_associated_SNPs_91098 0 0 1 0 2 ARHGEF1 chr19:42402095 3'AG 42402095 Downstream 76bp
chr19 42402170 42402170 1 + G T rs182824002 42402167 + 42402147 42402187 41 CGGCCTTCCCGGGGCAGCCTCGGGGCTAAGGGCCGGGGTGG CGGCCTTCCCGGGGCAGCCTCGGTGCTAAGGGCCGGGGTGG < 41bp 0.897258261529848 0.688692463447197 0.95397025 0.9103602 prediction 0.417131596165301 Functional Loss - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42402167 chr19:42402170 synonymous SNV . 0 24 hm5C_associated_SNPs_91098 0 0 1 0 2 ARHGEF1 chr19:42402262 5'GT 42402262 Upstream 93bp
chr14 23072595 23072595 1 + C T SKCM 23072593 + 23072573 23072613 41 TGGCGGGAGACCATGGGGATCCCCAGCATGATCCTCCTGGG TGGCGGGAGACCATGGGGATCCTCAGCATGATCCTCCTGGG < 41bp 0.708562775605081 0.412342085283793 0.09754506 0.13816333 prediction 0.417125551210162 Functional Loss - ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23072593 chr14:23072595 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_91101 0 0 0 0 1 ABHD4 chr14:23072667 5'GT 23072667 Upstream 73bp
chr12 110341757 110341757 1 + G T UCEC 110341755 + 110341735 110341775 41 CACCCAGCATGCATGCCTATCAGCGGGAGAAGATGAAGGAG CACCCAGCATGCATGCCTATCATCGGGAGAAGATGAAGGAG < 41bp 0.708561217701384 0.347713735124831 0.8775141 0.43427402 prediction 0.417122435402768 Functional Loss - TCHP ENSG00000139437 CDS Human protein_coding chr12:110341755 chr12:110341757 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_91102 0 0 1 0 1 TCHP chr12:110341742 3'AG 110341742 Downstream 16bp
chr5 147553880 147553880 1 + C T PRAD 147553877 + 147553857 147553897 41 CCTGGCTTATATCAACCCATCTGCGGCACCAATTTTATAAC CCTGGCTTATATCAACCCATCTGTGGCACCAATTTTATAAC < 41bp 0.744902475852242 0.536345687433839 0.042107344 0.019046932 prediction 0.417113576836808 Functional Loss - SPINK14 ENSG00000196800 CDS Human protein_coding chr5:147553877 chr5:147553880 synonymous SNV . 0 24 hm5C_associated_SNPs_91104 0 0 0 0 2 SPINK14 chr5:147553797 3'AG 147553797 Downstream 84bp
chr5 147553880 147553880 1 + C T PRAD 147553877 + 147553857 147553897 41 CCTGGCTTATATCAACCCATCTGCGGCACCAATTTTATAAC CCTGGCTTATATCAACCCATCTGTGGCACCAATTTTATAAC < 41bp 0.744902475852242 0.536345687433839 0.042107344 0.019046932 prediction 0.417113576836808 Functional Loss - SPINK14 ENSG00000196800 CDS Human protein_coding chr5:147553877 chr5:147553880 synonymous SNV . 0 24 hm5C_associated_SNPs_91104 0 0 0 0 2 SPINK14 chr5:147553933 5'GT 147553933 Upstream 54bp
chr1 158325754 158325754 1 + C T CESC 158325752 + 158325732 158325772 41 TGAGCAGGAGCAGCGGGGCACTCAGCGAGGGGACGTCCTGC TGAGCAGGAGCAGCGGGGCACTTAGCGAGGGGACGTCCTGC < 41bp 0.793839794348183 0.58528325053875 0.69855046 0.53106606 prediction 0.417113087618867 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325752 chr1:158325754 stopgain 0.561 0 23 hm5C_associated_SNPs_91105 0 0 0 0 1 CD1E chr1:158325791 5'GT 158325791 Upstream 38bp
chr12 54943659 54943659 1 + G A UCEC 54943656 + 54943636 54943676 41 TTCCGTAGACCGTGGCTGAGCATGGAGCTGTCCCCCCGCAG TTCCGTAGACCGTGGCTGAGCATAGAGCTGTCCCCCCGCAG < 41bp 0.781999310143615 0.573443693442143 0.8522409 0.25993237 prediction 0.417111233402945 Functional Loss - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54943656 chr12:54943659 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_91106 0 0 0 0 1 PDE1B chr12:54943644 3'AG 54943644 Downstream 16bp
chr1 109742580 109742580 1 + G T GBM 109742578 + 109742558 109742598 41 GCTGACTACCATGCTATCGTCAGCAGCTGTGTGGCTGGGAT GCTGACTACCATGCTATCGTCATCAGCTGTGTGGCTGGGAT < 41bp 0.708553941539627 0.36690361352541 0.7529845 0.3880093 prediction 0.417107883079254 Functional Loss - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109742578 chr1:109742580 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_91108 0 0 0 0 1 KIAA1324 chr1:109742602 5'GT 109742602 Upstream 23bp
chr19 58722991 58722991 1 + G A rs113293561 58722988 + 58722968 58723008 41 GAGGAGTGGGGGCTGCTGGGCCCGACACAGAGGACCGAGTA GAGGAGTGGGGGCTGCTGGGCCCAACACAGAGGACCGAGTA < 41bp 0.806154370317123 0.597600849871328 0.3258916 0.22758693 prediction 0.41710704089159 Functional Loss - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58722988 chr19:58722991 synonymous SNV . 0 24 hm5C_associated_SNPs_91109 0 0 1 0 2 ZNF274 chr19:58722926 3'AG 58722926 Downstream 66bp
chr19 58722991 58722991 1 + G A rs113293561 58722988 + 58722968 58723008 41 GAGGAGTGGGGGCTGCTGGGCCCGACACAGAGGACCGAGTA GAGGAGTGGGGGCTGCTGGGCCCAACACAGAGGACCGAGTA < 41bp 0.806154370317123 0.597600849871328 0.3258916 0.22758693 prediction 0.41710704089159 Functional Loss - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58722988 chr19:58722991 synonymous SNV . 0 24 hm5C_associated_SNPs_91109 0 0 1 0 2 ZNF274 chr19:58723052 5'GT 58723052 Upstream 62bp
chr12 125834822 125834822 1 + G A SKCM 125834819 + 125834799 125834839 41 CGGTACCTCTGAATCTAGTCCGGGAAGGGGACACGGCCACC CGGTACCTCTGAATCTAGTCCGGAAAGGGGACACGGCCACC < 41bp 0.708550728429247 0.459027275709606 0.74376726 0.30658895 prediction 0.417101456858494 Functional Loss - TMEM132B ENSG00000139364 CDS Human protein_coding chr12:125834819 chr12:125834822 nonsynonymous SNV 0.960 0 24 hm5C_associated_SNPs_91110 0 0 0 0 1 TMEM132B chr12:125834889 5'GT 125834889 Upstream 68bp
chr21 43945945 43945945 1 + G A COAD 43945942 + 43945922 43945962 41 GTATGCAAGTTTTCACTTATCTCGAAAGCCTATCAGCATAG GTATGCAAGTTTTCACTTATCTCAAAAGCCTATCAGCATAG < 41bp 0.801705832572216 0.59315669530037 0.8834619 0.29377353 prediction 0.417098274543692 Functional Loss - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43945942 chr21:43945945 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91111 0 0 0 0 2 SLC37A1 chr21:43945886 3'AG 43945886 Downstream 60bp
chr21 43945945 43945945 1 + G A COAD 43945942 + 43945922 43945962 41 GTATGCAAGTTTTCACTTATCTCGAAAGCCTATCAGCATAG GTATGCAAGTTTTCACTTATCTCAAAAGCCTATCAGCATAG < 41bp 0.801705832572216 0.59315669530037 0.8834619 0.29377353 prediction 0.417098274543692 Functional Loss - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43945942 chr21:43945945 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91111 0 0 0 0 2 SLC37A1 chr21:43945967 5'GT 43945967 Upstream 23bp
chr20 31625456 31625456 1 + C T COAD 31625454 + 31625434 31625474 41 CCTGAGGGTTATGCCAAAGGCTCGTCGCAGCTGCTGCTCCC CCTGAGGGTTATGCCAAAGGCTTGTCGCAGCTGCTGCTCCC < 41bp 0.845255102755536 0.636708234480015 0.047420293 0.0359402 prediction 0.417093736551042 Functional Loss - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31625454 chr20:31625456 nonsynonymous SNV 0.028 2 23 hm5C_associated_SNPs_91113 0 0 0 0 2 BPIFB6 chr20:31625368 3'AG 31625368 Downstream 89bp
chr20 31625456 31625456 1 + C T COAD 31625454 + 31625434 31625474 41 CCTGAGGGTTATGCCAAAGGCTCGTCGCAGCTGCTGCTCCC CCTGAGGGTTATGCCAAAGGCTTGTCGCAGCTGCTGCTCCC < 41bp 0.845255102755536 0.636708234480015 0.047420293 0.0359402 prediction 0.417093736551042 Functional Loss - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31625454 chr20:31625456 nonsynonymous SNV 0.028 2 23 hm5C_associated_SNPs_91113 0 0 0 0 2 BPIFB6 chr20:31625544 5'GT 31625544 Upstream 89bp
chr17 7946139 7946139 1 + G T COAD 7946135 + 7946115 7946155 41 ATCAAGGGGTTGCTGGACCGCAAGGGGCTCTGGAGGAGTCT ATCAAGGGGTTGCTGGACCGCAAGTGGCTCTGGAGGAGTCT < 41bp 0.708543797378083 0.494944166061837 0.8633588 0.29568565 prediction 0.417087594756166 Functional Loss - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7946135 chr17:7946139 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_91115 0 0 0 0 2 ALOX15B chr17:7946099 3'AG 7946099 Downstream 41bp
chr17 7946139 7946139 1 + G T COAD 7946135 + 7946115 7946155 41 ATCAAGGGGTTGCTGGACCGCAAGGGGCTCTGGAGGAGTCT ATCAAGGGGTTGCTGGACCGCAAGTGGCTCTGGAGGAGTCT < 41bp 0.708543797378083 0.494944166061837 0.8633588 0.29568565 prediction 0.417087594756166 Functional Loss - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7946135 chr17:7946139 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_91115 0 0 0 0 2 ALOX15B chr17:7946202 5'GT 7946202 Upstream 64bp
chrX 22129677 22129677 1 + G A LUAD 22129674 + 22129654 22129694 41 GTATAGATGGCTGGAATTCTCAAGGGTAAGTTTAAGAAGAT GTATAGATGGCTGGAATTCTCAAAGGTAAGTTTAAGAAGAT < 41bp 0.783605559681218 0.575063712179358 0.90431476 0.8677002 prediction 0.417083695003719 Functional Loss - PHEX ENSG00000102174 CDS Human protein_coding chrX:22129674 chrX:22129677 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_91119 0 0 0 0 1 PHEX chrX:22129585 3'AG 22129585 Downstream 93bp
chr3 179439264 179439264 1 + G A COAD 179439261 + 179439241 179439281 41 GAAGTGATCCAGGAGTCGGGCACGAAACTGAAGCCAATGTA GAAGTGATCCAGGAGTCGGGCACAAAACTGAAGCCAATGTA < 41bp 0.708541149301274 0.47132076771492 0.17953292 0.13141039 prediction 0.417082298602548 Functional Loss - USP13 ENSG00000058056 CDS Human protein_coding chr3:179439261 chr3:179439264 synonymous SNV . 0 24 hm5C_associated_SNPs_91121 0 0 1 0 1 USP13 chr3:179439190 3'AG 179439190 Downstream 75bp
chr1 11253684 11253684 1 + G A rs28991009 11253681 + 11253661 11253701 41 GGCGGAGGCTGGACCATCATCCAGAGACGAAAAAGTGGCCT GGCGGAGGCTGGACCATCATCCAAAGACGAAAAAGTGGCCT < 41bp 0.787328860512747 0.578791505973453 0.8183985 0.7053408 prediction 0.417074709078587 Functional Loss - ANGPTL7 ENSG00000171819 CDS Human protein_coding chr1:11253681 chr1:11253684 synonymous SNV . 0 24 hm5C_associated_SNPs_91124 0 1 0 0 1 ANGPTL7 chr1:11253637 3'AG 11253637 Downstream 48bp
chr12 118582479 118582479 1 + C T SKCM 118582477 + 118582457 118582497 41 TCAGCAACCGATCTGGAGACCACCGTGGCAAATTCAAGGTG TCAGCAACCGATCTGGAGACCATCGTGGCAAATTCAAGGTG < 41bp 0.708532779261181 0.43532873552735 0.09824988 0.10062757 prediction 0.417065558522362 Functional Loss - PEBP1 ENSG00000089220 CDS Human protein_coding chr12:118582477 chr12:118582479 synonymous SNV . 0 23 hm5C_associated_SNPs_91128 0 0 1 0 2 PEBP1 chr12:118582391 3'AG 118582391 Downstream 89bp
chr12 118582479 118582479 1 + C T SKCM 118582477 + 118582457 118582497 41 TCAGCAACCGATCTGGAGACCACCGTGGCAAATTCAAGGTG TCAGCAACCGATCTGGAGACCATCGTGGCAAATTCAAGGTG < 41bp 0.708532779261181 0.43532873552735 0.09824988 0.10062757 prediction 0.417065558522362 Functional Loss - PEBP1 ENSG00000089220 CDS Human protein_coding chr12:118582477 chr12:118582479 synonymous SNV . 0 23 hm5C_associated_SNPs_91128 0 0 1 0 2 PEBP1 chr12:118582441 3'AG 118582441 Downstream 39bp
chr1 209948791 209948791 1 + T C UCEC 209948790 + 209948770 209948810 41 AGGAGTCACTGCAGAAAGTGCTGGAGGAGAAAATGAATGCA AGGAGTCACTGCAGAAAGTGCCGGAGGAGAAAATGAATGCA < 41bp 0.843664355057966 0.635131779780077 0.3759496 0.6662627 prediction 0.417065150555778 Functional Loss - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209948790 chr1:209948791 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_91129 0 0 0 0 2 TRAF3IP3 chr1:209948694 3'AG 209948694 Downstream 98bp
chr1 209948791 209948791 1 + T C UCEC 209948790 + 209948770 209948810 41 AGGAGTCACTGCAGAAAGTGCTGGAGGAGAAAATGAATGCA AGGAGTCACTGCAGAAAGTGCCGGAGGAGAAAATGAATGCA < 41bp 0.843664355057966 0.635131779780077 0.3759496 0.6662627 prediction 0.417065150555778 Functional Loss - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209948790 chr1:209948791 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_91129 0 0 0 0 2 TRAF3IP3 chr1:209948834 5'GT 209948834 Upstream 44bp
chr1 909364 909364 1 + G A SKCM 909361 + 909341 909381 41 CAAGAAGGGAGCCCTGCAGTCCAGAGCCGCTCAGAGACACC CAAGAAGGGAGCCCTGCAGTCCAAAGCCGCTCAGAGACACC < 41bp 0.708531520928105 0.462564093294872 0.71186596 0.4443745 prediction 0.417063041856209 Functional Loss - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:909361 chr1:909364 nonsynonymous SNV 0.022 1 24 hm5C_associated_SNPs_91130 0 0 0 0 1 PLEKHN1 chr1:909431 5'GT 909431 Upstream 68bp
chr4 2900172 2900172 1 + C T UCEC 2900169 + 2900149 2900189 41 CTTCCCCTCAGGTTCTTATTCTCCGGAACCATGGGCTCGTG CTTCCCCTCAGGTTCTTATTCTCTGGAACCATGGGCTCGTG < 41bp 0.775296544647021 0.566772356233654 0.13472122 0.093927026 prediction 0.417048376826734 Functional Loss - ADD1 ENSG00000087274 CDS Human protein_coding chr4:2900169 chr4:2900172 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91135 0 0 1 0 2 ADD1 chr4:2900160 3'AG 2900160 Downstream 13bp
chr4 2900172 2900172 1 + C T UCEC 2900169 + 2900149 2900189 41 CTTCCCCTCAGGTTCTTATTCTCCGGAACCATGGGCTCGTG CTTCCCCTCAGGTTCTTATTCTCTGGAACCATGGGCTCGTG < 41bp 0.775296544647021 0.566772356233654 0.13472122 0.093927026 prediction 0.417048376826734 Functional Loss - ADD1 ENSG00000087274 CDS Human protein_coding chr4:2900169 chr4:2900172 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91135 0 0 1 0 2 ADD1 chr4:2900258 5'GT 2900258 Upstream 87bp
chr2 131890578 131890578 1 + T C SARC 131890577 + 131890557 131890597 41 CCCCTGAGGTAGGGAGAACCCTGAGCCTCCAGGTGAGGGAA CCCCTGAGGTAGGGAGAACCCCGAGCCTCCAGGTGAGGGAA < 41bp 0.724864564527944 0.516340787782172 0.24094555 0.81878346 prediction 0.417047553491543 Functional Loss - PLEKHB2 ENSG00000115762 CDS Human protein_coding chr2:131890577 chr2:131890578 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_91137 0 0 1 0 1 PLEKHB2 chr2:131890588 5'GT 131890588 Upstream 11bp
chr3 9691362 9691362 1 + T C LIHC 9691361 + 9691341 9691381 41 AGGAGCTGGGGCTTGGGGAGCTGCTGGAGGAGTTCTCCCGG AGGAGCTGGGGCTTGGGGAGCCGCTGGAGGAGTTCTCCCGG < 41bp 0.774523187106402 0.566004791451433 0.9116893 0.90822077 prediction 0.417036791309938 Functional Loss - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9691361 chr3:9691362 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_91138 0 0 1 0 1 MTMR14 chr3:9691426 5'GT 9691426 Upstream 65bp
chr11 113803790 113803790 1 + G A SKCM 113803787 + 113803767 113803807 41 CAGCATCCTGCAGAGCAGCGCTGGAGGATTTGCACAGATTC CAGCATCCTGCAGAGCAGCGCTGAAGGATTTGCACAGATTC < 41bp 0.811487132718355 0.602970284580394 0.21507588 0.09032765 prediction 0.417033696275922 Functional Loss - HTR3B ENSG00000149305 CDS Human protein_coding chr11:113803787 chr11:113803790 nonsynonymous SNV 0.970 1 24 hm5C_associated_SNPs_91139 0 0 0 0 1 HTR3B chr11:113803815 5'GT 113803815 Upstream 26bp
chr1 55277797 55277797 1 + G A PRAD 55277794 + 55277774 55277814 41 TGGCACGATCCGTCGGCACCCGCGGCCCCTATGACACTTTC TGGCACGATCCGTCGGCACCCGCAGCCCCTATGACACTTTC < 41bp 0.816654524462432 0.608140668394196 0.6448356 0.16722837 prediction 0.417027712136471 Functional Loss - LEXM ENSG00000162398 CDS Human protein_coding chr1:55277794 chr1:55277797 nonsynonymous SNV 0.025 2 24 hm5C_associated_SNPs_91140 0 0 0 0 2 LEXM chr1:55277719 3'AG 55277719 Downstream 79bp
chr1 55277797 55277797 1 + G A PRAD 55277794 + 55277774 55277814 41 TGGCACGATCCGTCGGCACCCGCGGCCCCTATGACACTTTC TGGCACGATCCGTCGGCACCCGCAGCCCCTATGACACTTTC < 41bp 0.816654524462432 0.608140668394196 0.6448356 0.16722837 prediction 0.417027712136471 Functional Loss - LEXM ENSG00000162398 CDS Human protein_coding chr1:55277794 chr1:55277797 nonsynonymous SNV 0.025 2 24 hm5C_associated_SNPs_91140 0 0 0 0 2 LEXM chr1:55277862 5'GT 55277862 Upstream 66bp
chr3 40553958 40553958 1 + G A UCEC 40553955 + 40553935 40553975 41 AAGGGGAACTGCCATGGGGCCTCGATCCCTGGGAACCTATG AAGGGGAACTGCCATGGGGCCTCAATCCCTGGGAACCTATG < 41bp 0.79974563557399 0.591232086348315 0.5840379 0.11711112 prediction 0.417027098451351 Functional Loss - ZNF620 ENSG00000177842 CDS Human protein_coding chr3:40553955 chr3:40553958 nonsynonymous SNV 0.615 0 24 hm5C_associated_SNPs_91141 0 0 1 0 2 ZNF620 chr3:40553893 3'AG 40553893 Downstream 66bp
chr3 40553958 40553958 1 + G A UCEC 40553955 + 40553935 40553975 41 AAGGGGAACTGCCATGGGGCCTCGATCCCTGGGAACCTATG AAGGGGAACTGCCATGGGGCCTCAATCCCTGGGAACCTATG < 41bp 0.79974563557399 0.591232086348315 0.5840379 0.11711112 prediction 0.417027098451351 Functional Loss - ZNF620 ENSG00000177842 CDS Human protein_coding chr3:40553955 chr3:40553958 nonsynonymous SNV 0.615 0 24 hm5C_associated_SNPs_91141 0 0 1 0 2 ZNF620 chr3:40554006 5'GT 40554006 Upstream 49bp
chr1 110168320 110168320 1 + C T SKCM 110168317 + 110168297 110168337 41 GCTCACTGGCTGAGAGCGAGCTCCGTAGTGCCCCGTATGAG GCTCACTGGCTGAGAGCGAGCTCTGTAGTGCCCCGTATGAG < 41bp 0.742579212900511 0.534067025028385 0.11913383 0.07591754 prediction 0.417024375744254 Functional Loss - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110168317 chr1:110168320 nonsynonymous SNV 0.982 3 24 hm5C_associated_SNPs_91144 0 0 1 0 2 AMPD2 chr1:110168284 3'AG 110168284 Downstream 37bp
chr1 110168320 110168320 1 + C T SKCM 110168317 + 110168297 110168337 41 GCTCACTGGCTGAGAGCGAGCTCCGTAGTGCCCCGTATGAG GCTCACTGGCTGAGAGCGAGCTCTGTAGTGCCCCGTATGAG < 41bp 0.742579212900511 0.534067025028385 0.11913383 0.07591754 prediction 0.417024375744254 Functional Loss - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110168317 chr1:110168320 nonsynonymous SNV 0.982 3 24 hm5C_associated_SNPs_91144 0 0 1 0 2 AMPD2 chr1:110168414 5'GT 110168414 Upstream 95bp
chr6 160553345 160553345 1 + C T rs151091788 160553342 + 160553322 160553362 41 CTCATGGCCTTCTCGCCCAACTACATGTCCATGCTGCTCTT CTCATGGCCTTCTCGCCCAACTATATGTCCATGCTGCTCTT < 41bp 0.748586810076799 0.540079881618916 0.8631077 0.29545727 prediction 0.417013856915767 Functional Loss - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160553342 chr6:160553345 synonymous SNV . 0 24 hm5C_associated_SNPs_91146 0 0 0 0 2 SLC22A1 chr6:160553264 3'AG 160553264 Downstream 82bp
chr6 160553345 160553345 1 + C T rs151091788 160553342 + 160553322 160553362 41 CTCATGGCCTTCTCGCCCAACTACATGTCCATGCTGCTCTT CTCATGGCCTTCTCGCCCAACTATATGTCCATGCTGCTCTT < 41bp 0.748586810076799 0.540079881618916 0.8631077 0.29545727 prediction 0.417013856915767 Functional Loss - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160553342 chr6:160553345 synonymous SNV . 0 24 hm5C_associated_SNPs_91146 0 0 0 0 2 SLC22A1 chr6:160553418 5'GT 160553418 Upstream 74bp
chr19 4236982 4236982 1 + G A rs200510554 4236979 + 4236959 4236999 41 CATCCTCAGGGCTGTGCGGCCCCGAGCCAGGTACTACGTCC CATCCTCAGGGCTGTGCGGCCCCAAGCCAGGTACTACGTCC < 41bp 0.798164352074583 0.589660181306995 0.14639959 0.120792925 prediction 0.417008341535177 Functional Loss - EBI3 ENSG00000105246 CDS Human protein_coding chr19:4236979 chr19:4236982 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_91150 0 0 0 0 1 EBI3 chr19:4236933 3'AG 4236933 Downstream 50bp
chr14 92922828 92922828 1 + G A SKCM 92922825 + 92922805 92922845 41 AGGCACGAGAACATTGAGAACGGGAATGTTCCTGTGGAAAA AGGCACGAGAACATTGAGAACGGAAATGTTCCTGTGGAAAA < 41bp 0.797482586339588 0.588978661277085 0.47156438 0.21813855 prediction 0.417007850125007 Functional Loss - SLC24A4 ENSG00000140090 CDS Human protein_coding chr14:92922825 chr14:92922828 synonymous SNV . 0 24 hm5C_associated_SNPs_91151 0 0 0 0 1 SLC24A4 chr14:92922748 3'AG 92922748 Downstream 81bp
chr11 116701573 116701573 1 + T C UCEC 116701572 + 116701552 116701592 41 CCAAGACCGCCAAGGATGCACTGAGCAGCGTGCAGGAGTCC CCAAGACCGCCAAGGATGCACCGAGCAGCGTGCAGGAGTCC < 41bp 0.708500421860834 0.475715430241493 0.20989719 0.26769373 prediction 0.417000843721669 Functional Loss - APOC3 ENSG00000110245 CDS Human protein_coding chr11:116701572 chr11:116701573 nonsynonymous SNV 0.017 4 22 hm5C_associated_SNPs_91152 0 0 1 0 2 APOC3 chr11:116701489 3'AG 116701489 Downstream 85bp
chr11 116701573 116701573 1 + T C UCEC 116701572 + 116701552 116701592 41 CCAAGACCGCCAAGGATGCACTGAGCAGCGTGCAGGAGTCC CCAAGACCGCCAAGGATGCACCGAGCAGCGTGCAGGAGTCC < 41bp 0.708500421860834 0.475715430241493 0.20989719 0.26769373 prediction 0.417000843721669 Functional Loss - APOC3 ENSG00000110245 CDS Human protein_coding chr11:116701572 chr11:116701573 nonsynonymous SNV 0.017 4 22 hm5C_associated_SNPs_91152 0 0 1 0 2 APOC3 chr11:116701612 5'GT 116701612 Upstream 40bp
chr17 79990655 79990655 1 + C T UVM 79990652 + 79990632 79990672 41 CAACTTGGGGCTGTGGGACACAGCGGGTCAGGAGGACTACG CAACTTGGGGCTGTGGGACACAGTGGGTCAGGAGGACTACG < 41bp 0.716937190493397 0.508443049280964 0.5578544 0.40655002 prediction 0.416988282424866 Functional Loss - RAC3 ENSG00000169750 CDS Human protein_coding chr17:79990652 chr17:79990655 nonsynonymous SNV 0.095 4 24 hm5C_associated_SNPs_91157 0 0 1 0 2 RAC3 chr17:79990587 3'AG 79990587 Downstream 69bp
chr17 79990655 79990655 1 + C T UVM 79990652 + 79990632 79990672 41 CAACTTGGGGCTGTGGGACACAGCGGGTCAGGAGGACTACG CAACTTGGGGCTGTGGGACACAGTGGGTCAGGAGGACTACG < 41bp 0.716937190493397 0.508443049280964 0.5578544 0.40655002 prediction 0.416988282424866 Functional Loss - RAC3 ENSG00000169750 CDS Human protein_coding chr17:79990652 chr17:79990655 nonsynonymous SNV 0.095 4 24 hm5C_associated_SNPs_91157 0 0 1 0 2 RAC3 chr17:79990704 5'GT 79990704 Upstream 50bp
chr17 79205240 79205240 1 - C A OV 79205242 - 79205222 79205262 41 ACTGTGAGGCCGTGCTGCAGCTGCTGACCTGCCACCTGCGT ACTGTGAGGCCGTGCTGCAGCTTCTGACCTGCCACCTGCGT < 41bp 0.708493448130212 0.350674958429686 0.2154989 0.16324505 prediction 0.416986896260424 Functional Loss - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79205242 chr17:79205240 synonymous SNV . 0 23 hm5C_associated_SNPs_91158 0 0 1 0 2 TEPSIN chr17:79205198 5'GT 79205198 Upstream 43bp
chr17 79205240 79205240 1 - C A OV 79205242 - 79205222 79205262 41 ACTGTGAGGCCGTGCTGCAGCTGCTGACCTGCCACCTGCGT ACTGTGAGGCCGTGCTGCAGCTTCTGACCTGCCACCTGCGT < 41bp 0.708493448130212 0.350674958429686 0.2154989 0.16324505 prediction 0.416986896260424 Functional Loss - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79205242 chr17:79205240 synonymous SNV . 0 23 hm5C_associated_SNPs_91158 0 0 1 0 2 TEPSIN chr17:79205276 3'AG 79205276 Downstream 37bp
chr2 226273727 226273727 1 + G A LUAD 226273724 + 226273704 226273744 41 TCAGAATGCGTCAGATATTGCTCGAGAGAATGATCGCTTGA TCAGAATGCGTCAGATATTGCTCAAGAGAATGATCGCTTGA < 41bp 0.78020702918541 0.571714672701897 0.18568054 0.12888542 prediction 0.416984712967026 Functional Loss - NYAP2 ENSG00000144460 CDS Human protein_coding chr2:226273724 chr2:226273727 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_91159 0 0 0 0 1 NYAP2 chr2:226273817 5'GT 226273817 Upstream 91bp
chr2 71740985 71740985 1 + G A SKCM 71740982 + 71740962 71741002 41 CGTCCTCCGCCCCACTACCCCGGGATCAAAAGAAAGCGAAG CGTCCTCCGCCCCACTACCCCGGAATCAAAAGAAAGCGAAG < 41bp 0.715141888665933 0.506650424878522 0.72947586 0.17847824 prediction 0.416982927574824 Functional Loss - DYSF ENSG00000135636 CDS Human protein_coding chr2:71740982 chr2:71740985 synonymous SNV . 0 24 hm5C_associated_SNPs_91160 0 0 0 0 1 DYSF chr2:71741051 5'GT 71741051 Upstream 67bp
chr3 30732963 30732963 1 + G T HNSC 30732961 + 30732941 30732981 41 TGAGTGCTGGGACCACGACCCAGAGGCCCGTCTCACAGCCC TGAGTGCTGGGACCACGACCCATAGGCCCGTCTCACAGCCC < 41bp 0.70848914739069 0.358482997631954 0.88659024 0.06090042 prediction 0.416978294781381 Functional Loss - TGFBR2 ENSG00000163513 CDS Human protein_coding chr3:30732961 chr3:30732963 stopgain 0.784 1 23 hm5C_associated_SNPs_91161 0 0 1 0 1 TGFBR2 chr3:30732912 3'AG 30732912 Downstream 52bp
chr17 79974718 79974718 1 + C T LUSC 79974715 + 79974695 79974735 41 CCTGCTGGAGCATGCCATCTCCCCATCTGCGGCCGATGTGC CCTGCTGGAGCATGCCATCTCCCTATCTGCGGCCGATGTGC < 41bp 0.708485690751397 0.495734868054914 0.40924877 0.31536162 prediction 0.416971381502793 Functional Loss - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79974715 chr17:79974718 nonsynonymous SNV 0.148 3 24 hm5C_associated_SNPs_91163 0 0 1 0 2 ASPSCR1 chr17:79974676 3'AG 79974676 Downstream 43bp
chr17 79974718 79974718 1 + C T LUSC 79974715 + 79974695 79974735 41 CCTGCTGGAGCATGCCATCTCCCCATCTGCGGCCGATGTGC CCTGCTGGAGCATGCCATCTCCCTATCTGCGGCCGATGTGC < 41bp 0.708485690751397 0.495734868054914 0.40924877 0.31536162 prediction 0.416971381502793 Functional Loss - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79974715 chr17:79974718 nonsynonymous SNV 0.148 3 24 hm5C_associated_SNPs_91163 0 0 1 0 2 ASPSCR1 chr17:79974745 5'GT 79974745 Upstream 28bp
chr14 65560456 65560456 1 - C A LUAD 65560458 - 65560438 65560478 41 AAGACAGCTTTCACAGTTTGCGGGACTCAGTCCCATCACTC AAGACAGCTTTCACAGTTTGCGTGACTCAGTCCCATCACTC < 41bp 0.903784275353087 0.695299687776693 0.6416217 0.14636788 prediction 0.416969175152789 Functional Loss - MAX ENSG00000125952 CDS Human protein_coding chr14:65560458 chr14:65560456 synonymous SNV . 0 23 hm5C_associated_SNPs_91164 0 0 1 0 2 MAX chr14:65560426 5'GT 65560426 Upstream 31bp
chr14 65560456 65560456 1 - C A LUAD 65560458 - 65560438 65560478 41 AAGACAGCTTTCACAGTTTGCGGGACTCAGTCCCATCACTC AAGACAGCTTTCACAGTTTGCGTGACTCAGTCCCATCACTC < 41bp 0.903784275353087 0.695299687776693 0.6416217 0.14636788 prediction 0.416969175152789 Functional Loss - MAX ENSG00000125952 CDS Human protein_coding chr14:65560458 chr14:65560456 synonymous SNV . 0 23 hm5C_associated_SNPs_91164 0 0 1 0 2 MAX chr14:65560533 3'AG 65560533 Downstream 78bp
chr19 55222108 55222108 1 + G A SKCM 55222105 + 55222085 55222125 41 TCCTGTGACCTCAGCCCACGCGGGGACCTACAGGTGCTACA TCCTGTGACCTCAGCCCACGCGGAGACCTACAGGTGCTACA < 41bp 0.788469377730359 0.579985173136364 0.8972877 0.6541182 prediction 0.416968409187991 Functional Loss - LILRP2 ENSG00000170858 ncRNA_exonic Human transcribed_processed_pseudogene chr19:55222105 chr19:55222108 . . 0 24 hm5C_associated_SNPs_91165 0 0 0 0 1 LILRP2 chr19:55222191 5'GT 55222191 Upstream 84bp
chr20 43058205 43058205 1 + G A SKCM 43058202 + 43058182 43058222 41 GCCCTCACCGCCAGGTGGCTCAGGGTCTGAGCCCTATAAGC GCCCTCACCGCCAGGTGGCTCAGAGTCTGAGCCCTATAAGC < 41bp 0.81145338812962 0.602972591213237 0.9316784 0.72288215 prediction 0.416961593832765 Functional Loss - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43058202 chr20:43058205 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_91167 0 0 1 0 1 HNF4A chr20:43058163 3'AG 43058163 Downstream 43bp
chr1 28864356 28864356 1 + C T SKCM 28864354 + 28864334 28864374 41 TCTCTTGCAGGTCGTGTTTTCGCCTGGGGCATGGGCACCAA TCTCTTGCAGGTCGTGTTTTCGTCTGGGGCATGGGCACCAA < 41bp 0.85681621354538 0.648338146786127 0.47192514 0.34400395 prediction 0.416956133518507 Functional Loss - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28864354 chr1:28864356 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_91168 0 0 1 0 1 RCC1 chr1:28864344 3'AG 28864344 Downstream 13bp
chr3 169644902 169644902 1 + G T STAD 169644898 + 169644878 169644918 41 CGATGGGAAAGAGGAGGCTTCGGAGCAGATTTTTGCAACCT CGATGGGAAAGAGGAGGCTTCGGATCAGATTTTTGCAACCT < 41bp 0.728502405243968 0.520029074678668 0.882727 0.29367697 prediction 0.416946661130601 Functional Loss - SAMD7 ENSG00000187033 CDS Human protein_coding chr3:169644898 chr3:169644902 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_91170 0 0 0 0 1 SAMD7 chr3:169644969 5'GT 169644969 Upstream 68bp
chr2 234871945 234871945 1 + G A BLCA 234871942 + 234871922 234871962 41 CCAGGACGTGTCTCCTATTACTCGGCACCCCCTGCAAGCTC CCAGGACGTGTCTCCTATTACTCAGCACCCCCTGCAAGCTC < 41bp 0.812300711805971 0.603828210514449 0.072531015 0.051311225 prediction 0.416945002583044 Functional Loss - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234871942 chr2:234871945 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_91173 0 0 0 0 2 TRPM8 chr2:234871926 3'AG 234871926 Downstream 20bp
chr2 234871945 234871945 1 + G A BLCA 234871942 + 234871922 234871962 41 CCAGGACGTGTCTCCTATTACTCGGCACCCCCTGCAAGCTC CCAGGACGTGTCTCCTATTACTCAGCACCCCCTGCAAGCTC < 41bp 0.812300711805971 0.603828210514449 0.072531015 0.051311225 prediction 0.416945002583044 Functional Loss - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234871942 chr2:234871945 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_91173 0 0 0 0 2 TRPM8 chr2:234872021 5'GT 234872021 Upstream 77bp
chr8 102585948 102585948 1 + G A SKCM 102585945 + 102585925 102585965 41 CCAAATCTCTCCGTCAGAAGCAGGGGGAGGGCCCCATGACC CCAAATCTCTCCGTCAGAAGCAGAGGGAGGGCCCCATGACC < 41bp 0.822513909552185 0.614042021474142 0.94352746 0.9317877 prediction 0.416943776156086 Functional Loss - GRHL2 ENSG00000083307 CDS Human protein_coding chr8:102585945 chr8:102585948 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91174 0 0 0 0 1 GRHL2 chr8:102585896 3'AG 102585896 Downstream 53bp
chr20 33585072 33585072 1 + G A COAD 33585069 + 33585049 33585089 41 CCCAGGCTCGGGCGGAGGAGCTGGAAGAGGAGCTGGAGGCA CCCAGGCTCGGGCGGAGGAGCTGAAAGAGGAGCTGGAGGCA < 41bp 0.80567250678976 0.597201914084602 0.9066245 0.91215336 prediction 0.416941185410316 Functional Loss - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33585069 chr20:33585072 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_91177 0 0 0 0 1 MYH7B chr20:33585054 3'AG 33585054 Downstream 19bp
chr1 229794937 229794937 1 + C T LGG 229794934 + 229794914 229794954 41 TCGAGCCTGACGTCCAGTTCCTGCGGGCCTCGCTGCAGCCG TCGAGCCTGACGTCCAGTTCCTGTGGGCCTCGCTGCAGCCG < 41bp 0.749442254881517 0.540974624155099 0.06787762 0.05628109 prediction 0.416935261452836 Functional Loss - URB2 ENSG00000135763 CDS Human protein_coding chr1:229794934 chr1:229794937 nonsynonymous SNV 0.890 3 24 hm5C_associated_SNPs_91179 0 0 1 0 1 URB2 chr1:229794847 3'AG 229794847 Downstream 91bp
chr3 37574880 37574880 1 + C T STAD 37574878 + 37574858 37574898 41 ACATCACAGCGCCTCAGTGTCACGACGGACAGCAGCCTGTG ACATCACAGCGCCTCAGTGTCATGACGGACAGCAGCCTGTG < 41bp 0.865223114986341 0.656755528136638 0.18828386 0.22707626 prediction 0.416935173699406 Functional Loss - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37574878 chr3:37574880 synonymous SNV . 0 23 hm5C_associated_SNPs_91180 0 0 0 0 2 ITGA9 chr3:37574805 3'AG 37574805 Downstream 76bp
chr3 37574880 37574880 1 + C T STAD 37574878 + 37574858 37574898 41 ACATCACAGCGCCTCAGTGTCACGACGGACAGCAGCCTGTG ACATCACAGCGCCTCAGTGTCATGACGGACAGCAGCCTGTG < 41bp 0.865223114986341 0.656755528136638 0.18828386 0.22707626 prediction 0.416935173699406 Functional Loss - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37574878 chr3:37574880 synonymous SNV . 0 23 hm5C_associated_SNPs_91180 0 0 0 0 2 ITGA9 chr3:37574959 5'GT 37574959 Upstream 80bp
chr16 57741380 57741380 1 + G T UCEC 57741376 + 57741356 57741396 41 CACCTTTCCTTGGCAGGAAGCGGAGAAGGCAAAGCCGGATG CACCTTTCCTTGGCAGGAAGCGGATAAGGCAAAGCCGGATG < 41bp 0.763176905177636 0.554710297794597 0.9217828 0.566913 prediction 0.416933214766079 Functional Loss - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57741376 chr16:57741380 nonsynonymous SNV 0.103 0 25 hm5C_associated_SNPs_91181 0 0 0 0 1 DRC7 chr16:57741372 3'AG 57741372 Downstream 9bp
chr18 192857 192857 1 + G A LUSC 192854 + 192834 192874 41 GTTCCTAGGTATGCAGGTGCCTTGAGAGCTTCAGGGGAAAT GTTCCTAGGTATGCAGGTGCCTTAAGAGCTTCAGGGGAAAT < 41bp 0.708465936054587 0.484858321487396 0.39105114 0.35958454 prediction 0.416931872109174 Functional Loss - USP14 ENSG00000101557 CDS Human protein_coding chr18:192854 chr18:192857 synonymous SNV . 0 24 hm5C_associated_SNPs_91182 0 0 1 0 2 USP14 chr18:192842 3'AG 192842 Downstream 16bp
chr18 192857 192857 1 + G A LUSC 192854 + 192834 192874 41 GTTCCTAGGTATGCAGGTGCCTTGAGAGCTTCAGGGGAAAT GTTCCTAGGTATGCAGGTGCCTTAAGAGCTTCAGGGGAAAT < 41bp 0.708465936054587 0.484858321487396 0.39105114 0.35958454 prediction 0.416931872109174 Functional Loss - USP14 ENSG00000101557 CDS Human protein_coding chr18:192854 chr18:192857 synonymous SNV . 0 24 hm5C_associated_SNPs_91182 0 0 1 0 2 USP14 chr18:192900 5'GT 192900 Upstream 44bp
chr9 131749993 131749993 1 + G A COAD 131749990 + 131749970 131750010 41 CATGGTGATGGCTGCTCAGCCTCGAAGGTAGGGCTCCTTCT CATGGTGATGGCTGCTCAGCCTCAAAGGTAGGGCTCCTTCT < 41bp 0.80416114608194 0.59569552360362 0.61377245 0.19161823 prediction 0.416931244956639 Functional Loss - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131749990 chr9:131749993 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_91183 0 0 1 0 1 NUP188 chr9:131749996 5'GT 131749996 Upstream 4bp
chr2 171693312 171693312 1 + G A LUSC 171693309 + 171693289 171693329 41 TGTTTCCTATCTAGGTCATCCTCGATTTTTCAACCAGCTCT TGTTTCCTATCTAGGTCATCCTCAATTTTTCAACCAGCTCT < 41bp 0.70846478019881 0.466842566538286 0.6400713 0.75025773 prediction 0.41692956039762 Functional Loss - GAD1 ENSG00000128683 CDS Human protein_coding chr2:171693309 chr2:171693312 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91184 0 0 1 0 2 GAD1 chr2:171693303 3'AG 171693303 Downstream 10bp
chr2 171693312 171693312 1 + G A LUSC 171693309 + 171693289 171693329 41 TGTTTCCTATCTAGGTCATCCTCGATTTTTCAACCAGCTCT TGTTTCCTATCTAGGTCATCCTCAATTTTTCAACCAGCTCT < 41bp 0.70846478019881 0.466842566538286 0.6400713 0.75025773 prediction 0.41692956039762 Functional Loss - GAD1 ENSG00000128683 CDS Human protein_coding chr2:171693309 chr2:171693312 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91184 0 0 1 0 2 GAD1 chr2:171693393 5'GT 171693393 Upstream 82bp
chr3 108392970 108392970 1 + G T LUAD 108392967 + 108392947 108392987 41 GGGATTTTGGTTTGCTTCATCTAGAGCAGACTGAAAAGGAA GGGATTTTGGTTTGCTTCATCTATAGCAGACTGAAAAGGAA < 41bp 0.70846268108934 0.329818699932475 0.29601547 0.26496094 prediction 0.416925362178681 Functional Loss - DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108392967 chr3:108392970 stopgain 1.000 1 24 hm5C_associated_SNPs_91185 0 0 0 0 2 DZIP3 chr3:108392925 3'AG 108392925 Downstream 46bp
chr3 108392970 108392970 1 + G T LUAD 108392967 + 108392947 108392987 41 GGGATTTTGGTTTGCTTCATCTAGAGCAGACTGAAAAGGAA GGGATTTTGGTTTGCTTCATCTATAGCAGACTGAAAAGGAA < 41bp 0.70846268108934 0.329818699932475 0.29601547 0.26496094 prediction 0.416925362178681 Functional Loss - DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108392967 chr3:108392970 stopgain 1.000 1 24 hm5C_associated_SNPs_91185 0 0 0 0 2 DZIP3 chr3:108393028 5'GT 108393028 Upstream 59bp
chr5 150867642 150867642 1 + G A HNSC 150867639 + 150867619 150867659 41 CCCTCATCATCCCACCGCTCCTGGAGGTCACCACCTTCTAC CCCTCATCATCCCACCGCTCCTGAAGGTCACCACCTTCTAC < 41bp 0.819129535935239 0.610669577487457 0.69801706 0.1783311 prediction 0.416919916895565 Functional Loss - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150867639 chr5:150867642 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_91189 0 0 1 0 1 SLC36A1 chr5:150867544 3'AG 150867544 Downstream 99bp
chr19 39591683 39591683 1 + G A UCEC 39591680 + 39591660 39591700 41 CGCAGATCTGGACGACTGCACACGACATGAAAGCAAGGTGA CGCAGATCTGGACGACTGCACACAACATGAAAGCAAGGTGA < 41bp 0.826223339255517 0.617768684700154 0.21444109 0.11861256 prediction 0.416909309110725 Functional Loss - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39591680 chr19:39591683 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_91191 0 0 0 0 2 ACP7 chr19:39591589 3'AG 39591589 Downstream 95bp
chr19 39591683 39591683 1 + G A UCEC 39591680 + 39591660 39591700 41 CGCAGATCTGGACGACTGCACACGACATGAAAGCAAGGTGA CGCAGATCTGGACGACTGCACACAACATGAAAGCAAGGTGA < 41bp 0.826223339255517 0.617768684700154 0.21444109 0.11861256 prediction 0.416909309110725 Functional Loss - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39591680 chr19:39591683 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_91191 0 0 0 0 2 ACP7 chr19:39591696 5'GT 39591696 Upstream 14bp
chr12 4835905 4835905 1 + C T UCEC 4835902 + 4835882 4835922 41 TTCTGAGGCCCAGCAGAAGGCGGCCCAGGACCTCTTCCGGA TTCTGAGGCCCAGCAGAAGGCGGTCCAGGACCTCTTCCGGA < 41bp 0.720664086973876 0.512210025434141 0.5398916 0.54872656 prediction 0.416908123079469 Functional Loss - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4835902 chr12:4835905 nonsynonymous SNV 0.444 4 24 hm5C_associated_SNPs_91192 0 0 0 0 1 GALNT8 chr12:4835995 5'GT 4835995 Upstream 91bp
chr19 39787197 39787197 1 + G T LUSC 39787194 + 39787174 39787214 41 GGTTCAAATCTCTGTCACCACAGGAGCTAGCGAGCTTCAAG GGTTCAAATCTCTGTCACCACAGTAGCTAGCGAGCTTCAAG < 41bp 0.935019132477284 0.726568543482704 0.9010505 0.38882977 prediction 0.416901177989161 Functional Loss - IFNL1 ENSG00000182393 CDS Human protein_coding chr19:39787194 chr19:39787197 stopgain 0.005 1 24 hm5C_associated_SNPs_91193 0 0 0 0 1 IFNL1 chr19:39787232 5'GT 39787232 Upstream 36bp
chr19 50919882 50919882 1 + G A COAD 50919879 + 50919859 50919899 41 TCCTGCAGGGGGGGACCACACGCGCTGCAAGACGGTGCTCA TCCTGCAGGGGGGGACCACACGCACTGCAAGACGGTGCTCA < 41bp 0.811949180764658 0.603499231171314 0.4561898 0.33706588 prediction 0.416899899186689 Functional Loss - POLD1 ENSG00000062822;ENSG00000142539 CDS Human other chr19:50919879 chr19:50919882 nonsynonymous SNV 0.389 3 24 hm5C_associated_SNPs_91194 0 0 1 0 1 POLD1 chr19:50919867 3'AG 50919867 Downstream 16bp
chr1 161254188 161254188 1 + G T UCEC 161254186 + 161254166 161254206 41 GGAGATTGACATTGATCTGACAGCACCAGAAACAGAGAAGG GGAGATTGACATTGATCTGACATCACCAGAAACAGAGAAGG < 41bp 0.708449302763845 0.367968892733594 0.32611352 0.18101782 prediction 0.416898605527691 Functional Loss - PCP4L1 ENSG00000248485 CDS Human protein_coding chr1:161254186 chr1:161254188 nonsynonymous SNV 0.954 4 23 hm5C_associated_SNPs_91195 0 0 0 0 1 PCP4L1 chr1:161254129 3'AG 161254129 Downstream 60bp
chr10 101421279 101421279 1 + G A rs35229854 101421276 + 101421256 101421296 41 TGAGTCCATTTCTCCGTCAGCGGGTGGCATTCCTGGGACTC TGAGTCCATTTCTCCGTCAGCGGATGGCATTCCTGGGACTC < 41bp 0.708447922523773 0.463040319398555 0.9178622 0.90097004 prediction 0.416895845047546 Functional Loss - ENTPD7 ENSG00000198018 CDS Human protein_coding chr10:101421276 chr10:101421279 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_91196 0 0 1 0 1 ENTPD7 chr10:101421203 3'AG 101421203 Downstream 77bp
chr22 23503707 23503707 1 + G A rs9624038 23503704 + 23503684 23503724 41 CAGAAATGGAAGGGAGTCCGCCCGAGACCCAGGAGAGCAAG CAGAAATGGAAGGGAGTCCGCCCAAGACCCAGGAGAGCAAG < 41bp 0.790438190712641 0.581992418602413 0.21758461 0.22174427 prediction 0.416891544220456 Functional Loss - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23503704 chr22:23503707 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_91197 0 0 0 0 1 RAB36 chr22:23503687 3'AG 23503687 Downstream 21bp
chr19 6829842 6829842 1 + G A SKCM 6829839 + 6829819 6829859 41 GCTCTACTCATCTGTAAGCGCAGGGGAGACTCCTATGACCT GCTCTACTCATCTGTAAGCGCAGAGGAGACTCCTATGACCT < 41bp 0.79115757139141 0.582715610600464 0.9284675 0.749569 prediction 0.416883921581893 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6829839 chr19:6829842 synonymous SNV . 0 24 hm5C_associated_SNPs_91201 0 0 0 0 2 VAV1 chr19:6829797 3'AG 6829797 Downstream 46bp
chr19 6829842 6829842 1 + G A SKCM 6829839 + 6829819 6829859 41 GCTCTACTCATCTGTAAGCGCAGGGGAGACTCCTATGACCT GCTCTACTCATCTGTAAGCGCAGAGGAGACTCCTATGACCT < 41bp 0.79115757139141 0.582715610600464 0.9284675 0.749569 prediction 0.416883921581893 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6829839 chr19:6829842 synonymous SNV . 0 24 hm5C_associated_SNPs_91201 0 0 0 0 2 VAV1 chr19:6829929 5'GT 6829929 Upstream 88bp
chr1 20470069 20470069 1 + G A KIRC 20470066 + 20470046 20470086 41 CTGGGGGGCCGTGGCCAGCCCAAGGATGAGGTGGACTGGTA CTGGGGGGCCGTGGCCAGCCCAAAGATGAGGTGGACTGGTA < 41bp 0.817985533798687 0.609546561141321 0.76441276 0.31304142 prediction 0.416877945314731 Functional Loss - PLA2G2F ENSG00000158786 CDS Human protein_coding chr1:20470066 chr1:20470069 synonymous SNV . 0 24 hm5C_associated_SNPs_91204 0 0 0 0 1 PLA2G2F chr1:20470083 5'GT 20470083 Upstream 15bp
chr3 50147060 50147060 1 + C T CESC 50147057 + 50147037 50147077 41 CACAGCAGTGACCACCACCTCAGCGGCTGTAGTGTCCCAGA CACAGCAGTGACCACCACCTCAGTGGCTGTAGTGTCCCAGA < 41bp 0.75648953278677 0.548052079429494 0.42615137 0.28037503 prediction 0.416874906714553 Functional Loss - RBM5 ENSG00000003756 CDS Human protein_coding chr3:50147057 chr3:50147060 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_91207 0 0 1 0 2 RBM5 chr3:50147036 3'AG 50147036 Downstream 25bp
chr3 50147060 50147060 1 + C T CESC 50147057 + 50147037 50147077 41 CACAGCAGTGACCACCACCTCAGCGGCTGTAGTGTCCCAGA CACAGCAGTGACCACCACCTCAGTGGCTGTAGTGTCCCAGA < 41bp 0.75648953278677 0.548052079429494 0.42615137 0.28037503 prediction 0.416874906714553 Functional Loss - RBM5 ENSG00000003756 CDS Human protein_coding chr3:50147057 chr3:50147060 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_91207 0 0 1 0 2 RBM5 chr3:50147121 5'GT 50147121 Upstream 62bp
chr5 145428761 145428761 1 + C T UCEC 145428758 + 145428738 145428778 41 CTCAGGGGCGTCTCCTTGGTCACCGGGCGAGTCGGCATCTT CTCAGGGGCGTCTCCTTGGTCACTGGGCGAGTCGGCATCTT < 41bp 0.756317563977253 0.54788035208094 0.3360792 0.24939844 prediction 0.416874423792627 Functional Loss - SH3RF2 ENSG00000156463 CDS Human protein_coding chr5:145428758 chr5:145428761 synonymous SNV . 0 24 hm5C_associated_SNPs_91208 0 0 1 0 1 SH3RF2 chr5:145428808 5'GT 145428808 Upstream 48bp
chr11 10483132 10483132 1 + G T UCEC 10483128 + 10483108 10483148 41 TGAGCAAGTCCGGCTCCTGGCGGAGAAGGTGTTTGCTAAAG TGAGCAAGTCCGGCTCCTGGCGGATAAGGTGTTTGCTAAAG < 41bp 0.708435911115379 0.499330715140798 0.8967391 0.6913328 prediction 0.416871822230759 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10483128 chr11:10483132 nonsynonymous SNV 0.984 4 25 hm5C_associated_SNPs_91209 0 0 0 0 1 AMPD3 chr11:10483062 3'AG 10483062 Downstream 71bp
chr16 56792463 56792463 1 + G A COAD 56792460 + 56792440 56792480 41 CCTCACATAGGTCAGTTCTCCTCGGGTCTCGGGGACTTGAC CCTCACATAGGTCAGTTCTCCTCAGGTCTCGGGGACTTGAC < 41bp 0.708433449390069 0.469171635923014 0.8777988 0.16398484 prediction 0.416866898780138 Functional Loss - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56792460 chr16:56792463 nonsynonymous SNV 0.319 2 24 hm5C_associated_SNPs_91210 0 0 1 0 1 NUP93 chr16:56792450 3'AG 56792450 Downstream 14bp
chr2 79254184 79254184 1 + G T UCEC 79254182 + 79254162 79254202 41 GGCTTGCCAGAAGCGGCCCTCTGGAAAACTGGTGTCTGTGC GGCTTGCCAGAAGCGGCCCTCTTGAAAACTGGTGTCTGTGC < 41bp 0.915235634125838 0.706813502178044 0.70362574 0.46346924 prediction 0.416844263895588 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79254182 chr2:79254184 stopgain 0.979 1 23 hm5C_associated_SNPs_91215 0 0 0 0 1 REG3G chr2:79254160 3'AG 79254160 Downstream 25bp
chr11 4153580 4153580 1 + G T OV 4153577 + 4153557 4153597 41 CAGCTTCCACTGCTCAGATCCTGGGGAATAATGAGTCCATT CAGCTTCCACTGCTCAGATCCTGTGGAATAATGAGTCCATT < 41bp 0.708418460841554 0.315930108121107 0.3983673 0.06038338 prediction 0.416836921683108 Functional Loss - RRM1 ENSG00000167325 CDS Human protein_coding chr11:4153577 chr11:4153580 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91218 0 0 1 0 2 RRM1 chr11:4153516 3'AG 4153516 Downstream 65bp
chr11 4153580 4153580 1 + G T OV 4153577 + 4153557 4153597 41 CAGCTTCCACTGCTCAGATCCTGGGGAATAATGAGTCCATT CAGCTTCCACTGCTCAGATCCTGTGGAATAATGAGTCCATT < 41bp 0.708418460841554 0.315930108121107 0.3983673 0.06038338 prediction 0.416836921683108 Functional Loss - RRM1 ENSG00000167325 CDS Human protein_coding chr11:4153577 chr11:4153580 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91218 0 0 1 0 2 RRM1 chr11:4153651 5'GT 4153651 Upstream 72bp
chr14 100589882 100589882 1 + C T SKCM 100589880 + 100589860 100589900 41 GCTTCTCTGCCCACAGGCCCCTCCAGCCAGCGTCAGGTGCA GCTTCTCTGCCCACAGGCCCCTTCAGCCAGCGTCAGGTGCA < 41bp 0.708417158510998 0.395106557493811 0.9273522 0.033586442 prediction 0.416834317021995 Functional Loss - EVL ENSG00000196405 CDS Human protein_coding chr14:100589880 chr14:100589882 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_91220 0 0 1 0 2 EVL chr14:100589876 3'AG 100589876 Downstream 7bp
chr14 100589882 100589882 1 + C T SKCM 100589880 + 100589860 100589900 41 GCTTCTCTGCCCACAGGCCCCTCCAGCCAGCGTCAGGTGCA GCTTCTCTGCCCACAGGCCCCTTCAGCCAGCGTCAGGTGCA < 41bp 0.708417158510998 0.395106557493811 0.9273522 0.033586442 prediction 0.416834317021995 Functional Loss - EVL ENSG00000196405 CDS Human protein_coding chr14:100589880 chr14:100589882 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_91220 0 0 1 0 2 EVL chr14:100589939 5'GT 100589939 Upstream 58bp
chr8 75898238 75898238 1 + C T COAD 75898236 + 75898216 75898256 41 ATTCATTATGAAGTGTACCGCGCGGGAGTGGCTCAGAGTAA ATTCATTATGAAGTGTACCGCGTGGGAGTGGCTCAGAGTAA < 41bp 0.848814845713142 0.640400797718447 0.57913494 0.4384262 prediction 0.416828095989391 Functional Loss - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75898236 chr8:75898238 nonsynonymous SNV 0.789 0 23 hm5C_associated_SNPs_91221 0 0 0 0 1 CRISPLD1 chr8:75898161 3'AG 75898161 Downstream 78bp
chr18 21104436 21104436 1 + C T UCEC 21104433 + 21104413 21104453 41 TTTCAACCTGACATCATTATCAGCGCAAGCCAAGGTAGGTC TTTCAACCTGACATCATTATCAGTGCAAGCCAAGGTAGGTC < 41bp 0.754348696312152 0.545934962910787 0.8953062 0.85056007 prediction 0.416827466802731 Functional Loss - C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21104433 chr18:21104436 synonymous SNV . 0 24 hm5C_associated_SNPs_91222 0 0 0 0 1 C18orf8 chr18:21104446 5'GT 21104446 Upstream 11bp
chr4 76489345 76489345 1 + C T rs2306175 76489342 + 76489322 76489362 41 AGGACAAGAAGAGGTATTTACGCCTCCTGGAGATTCACAAA AGGACAAGAAGAGGTATTTACGCTTCCTGGAGATTCACAAA < 41bp 0.708411931448226 0.498805071222196 0.32370913 0.3245972 prediction 0.416823862896452 Functional Loss - C4orf26 ENSG00000174792 CDS Human protein_coding chr4:76489342 chr4:76489345 nonsynonymous SNV 0.089 0 24 hm5C_associated_SNPs_91225 1 0 0 0 1 C4orf26 chr4:76489324 3'AG 76489324 Downstream 22bp
chr8 76472634 76472634 1 + A T rs139324425 76472632 + 76472612 76472652 41 CAATGCATCCACATTTGTCTCAAGACCCATTAACTGGACAA CAATGCATCCACATTTGTCTCATGACCCATTAACTGGACAA < 41bp 0.708410026120662 0.498646753947067 0.25368965 0.19338658 prediction 0.416820052241323 Functional Loss - HNF4G ENSG00000164749 CDS Human protein_coding chr8:76472632 chr8:76472634 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_91227 0 0 1 0 2 HNF4G chr8:76472579 3'AG 76472579 Downstream 56bp
chr8 76472634 76472634 1 + A T rs139324425 76472632 + 76472612 76472652 41 CAATGCATCCACATTTGTCTCAAGACCCATTAACTGGACAA CAATGCATCCACATTTGTCTCATGACCCATTAACTGGACAA < 41bp 0.708410026120662 0.498646753947067 0.25368965 0.19338658 prediction 0.416820052241323 Functional Loss - HNF4G ENSG00000164749 CDS Human protein_coding chr8:76472632 chr8:76472634 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_91227 0 0 1 0 2 HNF4G chr8:76472701 5'GT 76472701 Upstream 68bp
chr11 64876931 64876931 1 + C T rs564977861 64876928 + 64876908 64876948 41 TACGAGACGGCCACCATCTCCTACATCCTCACTCTCACTGA TACGAGACGGCCACCATCTCCTATATCCTCACTCTCACTGA < 41bp 0.728737436870282 0.520330327298803 0.37943044 0.23218477 prediction 0.416814219142958 Functional Loss - VPS51 ENSG00000149823 CDS Human protein_coding chr11:64876928 chr11:64876931 synonymous SNV . 0 24 hm5C_associated_SNPs_91230 0 0 1 0 1 VPS51 chr11:64876967 5'GT 64876967 Upstream 37bp
chr2 71908140 71908140 1 + G A SKCM 71908137 + 71908117 71908157 41 CTCTGTCCCCTCAGGGCAAGCTGGAAATGACCTTGGAGATT CTCTGTCCCCTCAGGGCAAGCTGAAAATGACCTTGGAGATT < 41bp 0.7157137418556 0.507312136478711 0.38220003 0.45131192 prediction 0.416803210753779 Functional Loss - DYSF ENSG00000135636 CDS Human protein_coding chr2:71908137 chr2:71908140 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91231 0 0 0 0 1 DYSF chr2:71908131 3'AG 71908131 Downstream 10bp
chr19 54963326 54963326 1 + C T COAD 54963323 + 54963303 54963343 41 CCGAGAGAATGGCATGGAGACGCCGATGCACGAGAACCCGG CCGAGAGAATGGCATGGAGACGCTGATGCACGAGAACCCGG < 41bp 0.708401526525161 0.488889184568402 0.3474602 0.7222291 prediction 0.416803053050321 Functional Loss - LENG8 ENSG00000167615 CDS Human protein_coding chr19:54963323 chr19:54963326 nonsynonymous SNV 0.209 4 24 hm5C_associated_SNPs_91232 0 0 1 0 1 LENG8 chr19:54963270 3'AG 54963270 Downstream 57bp
chr2 10559935 10559935 1 + G A BLCA 10559932 + 10559912 10559952 41 CCGAGGTGCTGCAGGACCTGCGGGAGAACACGGAGTTCACC CCGAGGTGCTGCAGGACCTGCGGAAGAACACGGAGTTCACC < 41bp 0.788460437542538 0.580059338207121 0.91561687 0.9022737 prediction 0.416802198670835 Functional Loss - HPCAL1 ENSG00000115756 CDS Human protein_coding chr2:10559932 chr2:10559935 nonsynonymous SNV 0.983 1 24 hm5C_associated_SNPs_91233 0 0 0 0 1 HPCAL1 chr2:10559860 3'AG 10559860 Downstream 76bp
chr7 5949682 5949682 1 + G A STAD 5949679 + 5949659 5949699 41 GTTGCAGGAGTGGATTAGAACAAGATGACATGAGAATTTTA GTTGCAGGAGTGGATTAGAACAAAATGACATGAGAATTTTA < 41bp 0.781485805467887 0.573087041791968 0.25573742 0.09977049 prediction 0.416797527351838 Functional Loss - CCZ1 ENSG00000122674 CDS Human protein_coding chr7:5949679 chr7:5949682 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_91234 0 0 0 0 2 CCZ1 chr7:5949666 3'AG 5949666 Downstream 17bp
chr7 5949682 5949682 1 + G A STAD 5949679 + 5949659 5949699 41 GTTGCAGGAGTGGATTAGAACAAGATGACATGAGAATTTTA GTTGCAGGAGTGGATTAGAACAAAATGACATGAGAATTTTA < 41bp 0.781485805467887 0.573087041791968 0.25573742 0.09977049 prediction 0.416797527351838 Functional Loss - CCZ1 ENSG00000122674 CDS Human protein_coding chr7:5949679 chr7:5949682 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_91234 0 0 0 0 2 CCZ1 chr7:5949747 5'GT 5949747 Upstream 66bp
chr10 101610442 101610442 1 + C T UCEC 101610439 + 101610419 101610459 41 GGTCCTGGATGAGGCCACTGCTGCGGTGGATCTAGAGACAG GGTCCTGGATGAGGCCACTGCTGTGGTGGATCTAGAGACAG < 41bp 0.763498370320735 0.555100688829962 0.18384054 0.14794317 prediction 0.416795362981544 Functional Loss - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101610439 chr10:101610442 nonsynonymous SNV 0.875 5 24 hm5C_associated_SNPs_91235 0 0 1 0 1 ABCC2 chr10:101610359 3'AG 101610359 Downstream 84bp
chr20 42199313 42199313 1 + C T SKCM 42199310 + 42199290 42199330 41 CTGGAGCCCCGGGCCAGGTTCTACGCTGCTGAGGTGGCCAG CTGGAGCCCCGGGCCAGGTTCTATGCTGCTGAGGTGGCCAG < 41bp 0.773068958996054 0.56467446707931 0.2906572 0.28161514 prediction 0.416788983833488 Functional Loss - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42199310 chr20:42199313 synonymous SNV . 0 24 hm5C_associated_SNPs_91237 0 0 0 2 2 SGK2 chr20:42199257 3'AG 42199257 Downstream 57bp
chr20 42199313 42199313 1 + C T SKCM 42199310 + 42199290 42199330 41 CTGGAGCCCCGGGCCAGGTTCTACGCTGCTGAGGTGGCCAG CTGGAGCCCCGGGCCAGGTTCTATGCTGCTGAGGTGGCCAG < 41bp 0.773068958996054 0.56467446707931 0.2906572 0.28161514 prediction 0.416788983833488 Functional Loss - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42199310 chr20:42199313 synonymous SNV . 0 24 hm5C_associated_SNPs_91237 0 0 0 2 2 SGK2 chr20:42199369 5'GT 42199369 Upstream 57bp
chr15 77310494 77310494 1 + G A SKCM 77310491 + 77310471 77310511 41 TTCTGTCCTGTGTCACAGTGCAGGGACTTCACAGCCCACAC TTCTGTCCTGTGTCACAGTGCAGAGACTTCACAGCCCACAC < 41bp 0.753498723588731 0.545105420171874 0.7333456 0.4352807 prediction 0.416786606833714 Functional Loss - PSTPIP1 ENSG00000140368 CDS Human protein_coding chr15:77310491 chr15:77310494 synonymous SNV . 0 24 hm5C_associated_SNPs_91238 0 0 0 0 2 PSTPIP1 chr15:77310489 3'AG 77310489 Downstream 6bp
chr15 77310494 77310494 1 + G A SKCM 77310491 + 77310471 77310511 41 TTCTGTCCTGTGTCACAGTGCAGGGACTTCACAGCCCACAC TTCTGTCCTGTGTCACAGTGCAGAGACTTCACAGCCCACAC < 41bp 0.753498723588731 0.545105420171874 0.7333456 0.4352807 prediction 0.416786606833714 Functional Loss - PSTPIP1 ENSG00000140368 CDS Human protein_coding chr15:77310491 chr15:77310494 synonymous SNV . 0 24 hm5C_associated_SNPs_91238 0 0 0 0 2 PSTPIP1 chr15:77310589 5'GT 77310589 Upstream 96bp
chr6 42852360 42852360 1 + C T COAD 42852357 + 42852337 42852377 41 GCTGTTCATTTCAGGATTGACGGCGTGAGTTTACTGGTGCA GCTGTTCATTTCAGGATTGACGGTGTGAGTTTACTGGTGCA < 41bp 0.74006892604056 0.531678611355401 0.5599455 0.29064012 prediction 0.416780629370319 Functional Loss - RPL7L1 ENSG00000146223 CDS Human protein_coding chr6:42852357 chr6:42852360 synonymous SNV . 0 24 hm5C_associated_SNPs_91239 0 0 1 0 1 RPL7L1 chr6:42852351 3'AG 42852351 Downstream 10bp
chr16 72046110 72046110 1 + C T LUSC 72046107 + 72046087 72046127 41 GCCCACAGACTGGCTGTTCGCTTCACCTCCCTGGGGCTCCT GCCCACAGACTGGCTGTTCGCTTTACCTCCCTGGGGCTCCT < 41bp 0.764318559224403 0.555929217599998 0.20606989 0.21423945 prediction 0.416778683248809 Functional Loss - DHODH ENSG00000102967 CDS Human protein_coding chr16:72046107 chr16:72046110 synonymous SNV . 0 24 hm5C_associated_SNPs_91241 0 0 1 0 1 DHODH chr16:72046161 5'GT 72046161 Upstream 52bp
chr4 100756791 100756791 1 + G T UCEC 100756789 + 100756769 100756809 41 CTCCTTTCTAGGTGGTATCACGGCAACCTCACACGCCATGC CTCCTTTCTAGGTGGTATCACGTCAACCTCACACGCCATGC < 41bp 0.912933415909682 0.7045452198948 0.47991467 0.11202201 prediction 0.416776392029764 Functional Loss - DAPP1 ENSG00000070190 CDS Human protein_coding chr4:100756789 chr4:100756791 nonsynonymous SNV 0.719 1 23 hm5C_associated_SNPs_91243 0 0 0 0 1 DAPP1 chr4:100756780 3'AG 100756780 Downstream 12bp
chr18 43796539 43796539 1 + G T UCEC 43796536 + 43796516 43796556 41 GAAGAGGTTTCAGGGAGCAGCAAGACAATCACTGCAGAGAT GAAGAGGTTTCAGGGAGCAGCAATACAATCACTGCAGAGAT < 41bp 0.708384916033981 0.339641034640664 0.31837174 0.23510423 prediction 0.416769832067963 Functional Loss - C18orf25 ENSG00000152242 CDS Human protein_coding chr18:43796536 chr18:43796539 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_91245 0 0 1 0 1 C18orf25 chr18:43796561 5'GT 43796561 Upstream 23bp
chr9 140777319 140777319 1 - G A LUSC 140777321 - 140777301 140777341 41 GCCTACCCTGTGAGGACGACCACGAAGTCCATGACGTTCCA GCCTACCCTGTGAGGACGACCATGAAGTCCATGACGTTCCA < 41bp 0.849044907733903 0.640661437683907 0.11204347 0.06420621 prediction 0.416766940099992 Functional Loss - CACNA1B ENSG00000148408 CDS Human protein_coding chr9:140777321 chr9:140777319 nonsynonymous SNV 0.987 5 23 hm5C_associated_SNPs_91246 0 0 0 0 1 CACNA1B chr9:140777289 5'GT 140777289 Upstream 31bp
chr2 228128574 228128574 1 + G A SKCM 228128571 + 228128551 228128591 41 TAAAGGGGAACGAGGCCGCCCAGGAAAGGATGCCATGGGGA TAAAGGGGAACGAGGCCGCCCAGAAAAGGATGCCATGGGGA < 41bp 0.708379846708163 0.458068531430313 0.88321924 0.5779403 prediction 0.416759693416327 Functional Loss - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228128571 chr2:228128574 nonsynonymous SNV 0.016 4 24 hm5C_associated_SNPs_91247 0 0 0 0 2 COL4A3 chr2:228128496 3'AG 228128496 Downstream 79bp
chr2 228128574 228128574 1 + G A SKCM 228128571 + 228128551 228128591 41 TAAAGGGGAACGAGGCCGCCCAGGAAAGGATGCCATGGGGA TAAAGGGGAACGAGGCCGCCCAGAAAAGGATGCCATGGGGA < 41bp 0.708379846708163 0.458068531430313 0.88321924 0.5779403 prediction 0.416759693416327 Functional Loss - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228128571 chr2:228128574 nonsynonymous SNV 0.016 4 24 hm5C_associated_SNPs_91247 0 0 0 0 2 COL4A3 chr2:228128660 5'GT 228128660 Upstream 87bp
chr2 113819754 113819754 1 + G A rs77864207 113819751 + 113819731 113819771 41 GGCTGGATGCCAGCCTGTCCCCCGTCATCCTGGGTGTCCAG GGCTGGATGCCAGCCTGTCCCCCATCATCCTGGGTGTCCAG < 41bp 0.708378128598146 0.453897315059672 0.020074934 0.015788317 prediction 0.416756257196293 Functional Loss - IL36RN ENSG00000136695 CDS Human protein_coding chr2:113819751 chr2:113819754 nonsynonymous SNV 0.899 2 24 hm5C_associated_SNPs_91249 0 0 0 0 2 IL36RN chr2:113819701 3'AG 113819701 Downstream 54bp
chr2 113819754 113819754 1 + G A rs77864207 113819751 + 113819731 113819771 41 GGCTGGATGCCAGCCTGTCCCCCGTCATCCTGGGTGTCCAG GGCTGGATGCCAGCCTGTCCCCCATCATCCTGGGTGTCCAG < 41bp 0.708378128598146 0.453897315059672 0.020074934 0.015788317 prediction 0.416756257196293 Functional Loss - IL36RN ENSG00000136695 CDS Human protein_coding chr2:113819751 chr2:113819754 nonsynonymous SNV 0.899 2 24 hm5C_associated_SNPs_91249 0 0 0 0 2 IL36RN chr2:113819828 5'GT 113819828 Upstream 75bp
chr11 125479363 125479363 1 + G A rs2241502 125479360 + 125479340 125479380 41 CCCTGGACGGGGCGTTTCTACTCGCTGCTGGATCCCTCTTA CCCTGGACGGGGCGTTTCTACTCACTGCTGGATCCCTCTTA < 41bp 0.815515193036346 0.607137366983511 0.22139698 0.015680552 prediction 0.41675565210567 Functional Loss - STT3A ENSG00000134910 CDS Human protein_coding chr11:125479360 chr11:125479363 synonymous SNV . 0 24 hm5C_associated_SNPs_91250 1 0 1 0 1 STT3A chr11:125479329 3'AG 125479329 Downstream 35bp
chr16 10997737 10997737 1 + C T LGG 10997735 + 10997715 10997755 41 GCCTGAACCTGCCCTGACCTCCCGAGCAAACATGACAGGTA GCCTGAACCTGCCCTGACCTCCTGAGCAAACATGACAGGTA < 41bp 0.70837632911722 0.42509247705645 0.58211654 0.29133093 prediction 0.41675265823444 Functional Loss - CIITA ENSG00000179583 CDS Human protein_coding chr16:10997735 chr16:10997737 stopgain 0.184 0 23 hm5C_associated_SNPs_91253 0 0 0 0 1 CIITA chr16:10997752 5'GT 10997752 Upstream 16bp
chr16 10997738 10997738 1 + G A SKCM 10997735 + 10997715 10997755 41 GCCTGAACCTGCCCTGACCTCCCGAGCAAACATGACAGGTA GCCTGAACCTGCCCTGACCTCCCAAGCAAACATGACAGGTA < 41bp 0.70837632911722 0.466942291724871 0.58211654 0.8772682 prediction 0.41675265823444 Functional Loss - CIITA ENSG00000179583 CDS Human protein_coding chr16:10997735 chr16:10997738 nonsynonymous SNV 0.082 3 24 hm5C_associated_SNPs_91254 0 0 0 0 1 CIITA chr16:10997752 5'GT 10997752 Upstream 15bp
chr20 21687639 21687639 1 + C T COAD 21687637 + 21687617 21687657 41 GGCGGGCCACGTCAGCATCCCGCGCTCATGGCCCTCGGCAC GGCGGGCCACGTCAGCATCCCGTGCTCATGGCCCTCGGCAC < 41bp 0.830071314778102 0.621698620683044 0.24536556 0.12212193 prediction 0.416745388190116 Functional Loss - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21687637 chr20:21687639 nonsynonymous SNV 0.987 5 23 hm5C_associated_SNPs_91255 0 0 0 0 1 PAX1 chr20:21687705 5'GT 21687705 Upstream 67bp
chr16 70497629 70497629 1 + C T STAD 70497626 + 70497606 70497646 41 GGCAGCGGAGGAGCCACCCTCAACGCCCTGCTGGTGGCTGC GGCAGCGGAGGAGCCACCCTCAATGCCCTGCTGGTGGCTGC < 41bp 0.720460717052489 0.512088553900805 0.826179 0.7552632 prediction 0.416744326303368 Functional Loss - FUK ENSG00000157353 CDS Human protein_coding chr16:70497626 chr16:70497629 synonymous SNV . 0 24 hm5C_associated_SNPs_91256 0 0 1 0 1 FUK chr16:70497677 5'GT 70497677 Upstream 49bp
chr2 184016285 184016285 1 + A C KIRC 184016281 + 184016261 184016301 41 TATCGGTCAGCCACGAAAGACGACATTATCTCCTGCCCAGT TATCGGTCAGCCACGAAAGACGACCTTATCTCCTGCCCAGT < 41bp 0.708372124843217 0.29119848037194 0.026227027 0.028951764 prediction 0.416744249686435 Functional Loss - NUP35 ENSG00000163002 CDS Human protein_coding chr2:184016281 chr2:184016285 synonymous SNV . 0 25 hm5C_associated_SNPs_91257 0 0 1 0 2 NUP35 chr2:184016236 3'AG 184016236 Downstream 50bp
chr2 184016285 184016285 1 + A C KIRC 184016281 + 184016261 184016301 41 TATCGGTCAGCCACGAAAGACGACATTATCTCCTGCCCAGT TATCGGTCAGCCACGAAAGACGACCTTATCTCCTGCCCAGT < 41bp 0.708372124843217 0.29119848037194 0.026227027 0.028951764 prediction 0.416744249686435 Functional Loss - NUP35 ENSG00000163002 CDS Human protein_coding chr2:184016281 chr2:184016285 synonymous SNV . 0 25 hm5C_associated_SNPs_91257 0 0 1 0 2 NUP35 chr2:184016377 5'GT 184016377 Upstream 93bp
chr17 16336993 16336993 1 + G A CESC 16336990 + 16336970 16337010 41 GCACTAAGCCAGATGGCAGCCCCGATGAGCGCTGGTGCTTC GCACTAAGCCAGATGGCAGCCCCAATGAGCGCTGGTGCTTC < 41bp 0.805904387562126 0.597535409598736 0.12807912 0.23438421 prediction 0.41673795592678 Functional Loss - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16336990 chr17:16336993 nonsynonymous SNV 0.884 4 24 hm5C_associated_SNPs_91260 0 0 1 0 1 TRPV2 chr17:16337012 5'GT 16337012 Upstream 20bp
chr2 3727463 3727463 1 + C T CESC 3727461 + 3727441 3727481 41 GTCCTCTGTGTTGCGCAGGTCACGACTGGTGTGTCCTCAGG GTCCTCTGTGTTGCGCAGGTCATGACTGGTGTGTCCTCAGG < 41bp 0.830714527341705 0.622348092922356 0.14472574 0.26627272 prediction 0.416732868838697 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3727461 chr2:3727463 synonymous SNV . 0 23 hm5C_associated_SNPs_91262 0 0 0 0 1 ALLC chr2:3727459 3'AG 3727459 Downstream 5bp
chrX 152101462 152101462 1 + G A LIHC 152101459 + 152101439 152101479 41 GGCAATGTGGGATCCGGAGCCACGGGCTCCCGGCCTGAAGG GGCAATGTGGGATCCGGAGCCACAGGCTCCCGGCCTGAAGG < 41bp 0.821551279873169 0.613185679712041 0.8989725 0.89606154 prediction 0.416731200322256 Functional Loss - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152101459 chrX:152101462 synonymous SNV . 0 24 hm5C_associated_SNPs_91263 0 0 0 0 2 ZNF185 chrX:152101417 3'AG 152101417 Downstream 46bp
chrX 152101462 152101462 1 + G A LIHC 152101459 + 152101439 152101479 41 GGCAATGTGGGATCCGGAGCCACGGGCTCCCGGCCTGAAGG GGCAATGTGGGATCCGGAGCCACAGGCTCCCGGCCTGAAGG < 41bp 0.821551279873169 0.613185679712041 0.8989725 0.89606154 prediction 0.416731200322256 Functional Loss - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152101459 chrX:152101462 synonymous SNV . 0 24 hm5C_associated_SNPs_91263 0 0 0 0 2 ZNF185 chrX:152101515 5'GT 152101515 Upstream 54bp
chr7 6187483 6187483 1 + C T STAD 6187480 + 6187460 6187500 41 TGTCACCAACAAACAGGCTGCGCCAGGCTTTATCGGACCAC TGTCACCAACAAACAGGCTGCGCTAGGCTTTATCGGACCAC < 41bp 0.708365209558575 0.480278021107119 0.16153839 0.11945808 prediction 0.41673041911715 Functional Loss - USP42 ENSG00000106346 CDS Human protein_coding chr7:6187480 chr7:6187483 nonsynonymous SNV 0.324 1 24 hm5C_associated_SNPs_91265 0 0 1 0 1 USP42 chr7:6187523 5'GT 6187523 Upstream 41bp
chr5 7893005 7893005 1 + C T rs34172797 7893002 + 7892982 7893022 41 ATACATGCATCCCATGAAGACAGCGGGAAAGCCCTGGCTCC ATACATGCATCCCATGAAGACAGTGGGAAAGCCCTGGCTCC < 41bp 0.717171824868005 0.508807426604392 0.30443713 0.2577386 prediction 0.416728796527227 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7893002 chr5:7893005 synonymous SNV . 0 24 hm5C_associated_SNPs_91266 1 0 1 0 1 MTRR chr5:7893026 5'GT 7893026 Upstream 22bp
chr17 6663914 6663914 1 + G A rs34048764 6663911 + 6663891 6663931 41 GTCGCAGTGAACAGGCCCAGCTCGGGAAAGGTAAGCACACA GTCGCAGTGAACAGGCCCAGCTCAGGAAAGGTAAGCACACA < 41bp 0.800223026120642 0.591860784117985 0.24186298 0.36456764 prediction 0.416724484005314 Functional Loss - XAF1 ENSG00000132530 CDS Human protein_coding chr17:6663911 chr17:6663914 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_91269 0 0 0 0 1 XAF1 chr17:6663920 5'GT 6663920 Upstream 7bp
chr3 137729276 137729276 1 + T C LIHC 137729275 + 137729255 137729295 41 GCAGGCCCTATTTCACCATCCTGGGACTTCCAGGTAGGCAC GCAGGCCCTATTTCACCATCCCGGGACTTCCAGGTAGGCAC < 41bp 0.779569189081597 0.571208376835298 0.81821597 0.8608433 prediction 0.416721624492598 Functional Loss - CLDN18 ENSG00000066405 CDS Human protein_coding chr3:137729275 chr3:137729276 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_91270 0 0 0 0 1 CLDN18 chr3:137729287 5'GT 137729287 Upstream 12bp
chr1 55273275 55273275 1 + C T LAML 55273273 + 55273253 55273293 41 AAGCTGATGAAGGAGGTGGACACAGGCTGGGCCAAGGCCCA AAGCTGATGAAGGAGGTGGACATAGGCTGGGCCAAGGCCCA < 41bp 0.70836013503429 0.427065232868388 0.48924932 0.7427135 prediction 0.41672027006858 Functional Loss - LEXM ENSG00000162398 CDS Human protein_coding chr1:55273273 chr1:55273275 nonsynonymous SNV 0.985 0 23 hm5C_associated_SNPs_91271 0 0 0 0 2 LEXM chr1:55273199 3'AG 55273199 Downstream 77bp
chr1 55273275 55273275 1 + C T LAML 55273273 + 55273253 55273293 41 AAGCTGATGAAGGAGGTGGACACAGGCTGGGCCAAGGCCCA AAGCTGATGAAGGAGGTGGACATAGGCTGGGCCAAGGCCCA < 41bp 0.70836013503429 0.427065232868388 0.48924932 0.7427135 prediction 0.41672027006858 Functional Loss - LEXM ENSG00000162398 CDS Human protein_coding chr1:55273273 chr1:55273275 nonsynonymous SNV 0.985 0 23 hm5C_associated_SNPs_91271 0 0 0 0 2 LEXM chr1:55273363 5'GT 55273363 Upstream 89bp
chr3 129233311 129233311 1 + C T PRAD 129233308 + 129233288 129233328 41 CCCGGCACGCCTATGACAAGCTGCGTGGCCTGTACATCCCT CCCGGCACGCCTATGACAAGCTGTGTGGCCTGTACATCCCT < 41bp 0.70835975762773 0.495420373963295 0.24489489 0.2770754 prediction 0.41671951525546 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129233308 chr3:129233311 nonsynonymous SNV 0.920 2 24 hm5C_associated_SNPs_91272 0 0 1 0 2 IFT122 chr3:129233232 3'AG 129233232 Downstream 80bp
chr3 129233311 129233311 1 + C T PRAD 129233308 + 129233288 129233328 41 CCCGGCACGCCTATGACAAGCTGCGTGGCCTGTACATCCCT CCCGGCACGCCTATGACAAGCTGTGTGGCCTGTACATCCCT < 41bp 0.70835975762773 0.495420373963295 0.24489489 0.2770754 prediction 0.41671951525546 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129233308 chr3:129233311 nonsynonymous SNV 0.920 2 24 hm5C_associated_SNPs_91272 0 0 1 0 2 IFT122 chr3:129233397 5'GT 129233397 Upstream 87bp
chr16 67208778 67208778 1 + G A GBM 67208775 + 67208755 67208795 41 AACCCGAGGCTGAAGCAGAACCAGAGCCGGAACTGGAGCCA AACCCGAGGCTGAAGCAGAACCAAAGCCGGAACTGGAGCCA < 41bp 0.792056142050015 0.583696767305464 0.8267766 0.42241806 prediction 0.416718749489101 Functional Loss - NOL3 ENSG00000140939 CDS Human protein_coding chr16:67208775 chr16:67208778 nonsynonymous SNV 0.068 2 24 hm5C_associated_SNPs_91273 0 0 0 0 1 NOL3 chr16:67208847 5'GT 67208847 Upstream 70bp
chr20 31643346 31643346 1 + C T SKCM 31643344 + 31643324 31643364 41 CTCGGATTGACAAGGATGAACTCGGCAAAGGTGAGCCCCAG CTCGGATTGACAAGGATGAACTTGGCAAAGGTGAGCCCCAG < 41bp 0.80427658128331 0.595917876031783 0.34101242 0.3041712 prediction 0.416717410503054 Functional Loss - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31643344 chr20:31643346 synonymous SNV . 0 23 hm5C_associated_SNPs_91274 0 0 0 0 1 BPIFB3 chr20:31643353 5'GT 31643353 Upstream 8bp
chr5 37443366 37443366 1 + C T UCEC 37443364 + 37443344 37443384 41 TCTGCTTTGGGTCTGGATCCCTCAGGTGCCCGTTTGGTGAC TCTGCTTTGGGTCTGGATCCCTTAGGTGCCCGTTTGGTGAC < 41bp 0.708357792195248 0.415422907516117 0.22861937 0.0781154 prediction 0.416715584390495 Functional Loss - WDR70 ENSG00000082068 CDS Human protein_coding chr5:37443364 chr5:37443366 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_91275 0 0 1 0 1 WDR70 chr5:37443341 3'AG 37443341 Downstream 26bp
chrX 30236764 30236764 1 + C T OV 30236762 + 30236742 30236782 41 CCGCAAGGCCCGAGATGAGACCCGGGGTCTCAATGTTCCTC CCGCAAGGCCCGAGATGAGACCTGGGGTCTCAATGTTCCTC < 41bp 0.80871042704318 0.600352817924225 0.43374804 0.39428002 prediction 0.416715218237909 Functional Loss - MAGEB2 ENSG00000099399 CDS Human protein_coding chrX:30236762 chrX:30236764 nonsynonymous SNV 0.005 1 23 hm5C_associated_SNPs_91276 0 0 0 0 1 MAGEB2 chrX:30236693 3'AG 30236693 Downstream 72bp
chr6 348110 348110 1 + G T LUAD 348108 + 348088 348128 41 CTCTTGGCCCCGCAGCCTGGCCGGGGTCTCCAGGAGCGTGA CTCTTGGCCCCGCAGCCTGGCCTGGGTCTCCAGGAGCGTGA < 41bp 0.708355633875758 0.339260317974345 0.91081566 0.03304568 prediction 0.416711267751517 Functional Loss - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348108 chr6:348110 nonsynonymous SNV 0.925 5 23 hm5C_associated_SNPs_91277 0 0 1 0 1 DUSP22 chr6:348103 3'AG 348103 Downstream 8bp
chr6 348111 348111 1 + G A SKCM 348108 + 348088 348128 41 CTCTTGGCCCCGCAGCCTGGCCGGGGTCTCCAGGAGCGTGA CTCTTGGCCCCGCAGCCTGGCCGAGGTCTCCAGGAGCGTGA < 41bp 0.708355633875758 0.461627213886167 0.91081566 0.29101172 prediction 0.416711267751517 Functional Loss - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348108 chr6:348111 nonsynonymous SNV 0.954 5 24 hm5C_associated_SNPs_91278 0 0 1 0 1 DUSP22 chr6:348103 3'AG 348103 Downstream 9bp
chr20 44048190 44048190 1 + G T UCEC 44048187 + 44048167 44048207 41 GGCAGATCGCTTGTTCCACACCAGCTACCACTCCCAGGCAG GGCAGATCGCTTGTTCCACACCATCTACCACTCCCAGGCAG < 41bp 0.708353838479801 0.350526102998652 0.13867849 0.018064976 prediction 0.416707676959603 Functional Loss - PIGT ENSG00000124155 CDS Human protein_coding chr20:44048187 chr20:44048190 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91280 0 0 1 1 2 PIGT chr20:44048113 3'AG 44048113 Downstream 78bp
chr20 44048190 44048190 1 + G T UCEC 44048187 + 44048167 44048207 41 GGCAGATCGCTTGTTCCACACCAGCTACCACTCCCAGGCAG GGCAGATCGCTTGTTCCACACCATCTACCACTCCCAGGCAG < 41bp 0.708353838479801 0.350526102998652 0.13867849 0.018064976 prediction 0.416707676959603 Functional Loss - PIGT ENSG00000124155 CDS Human protein_coding chr20:44048187 chr20:44048190 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91280 0 0 1 1 2 PIGT chr20:44048144 3'AG 44048144 Downstream 47bp
chrX 49021567 49021567 1 + C T UCEC 49021565 + 49021545 49021585 41 CCACATCAACGGAGAGTCAACGCAGGGCCTCACCCATGCCC CCACATCAACGGAGAGTCAACGTAGGGCCTCACCCATGCCC < 41bp 0.816146169505443 0.607793542885345 0.7967671 0.4281807 prediction 0.416705253240196 Functional Loss - MAGIX ENSG00000017621 CDS Human other chrX:49021565 chrX:49021567 stopgain 0.899 0 23 hm5C_associated_SNPs_91282 0 0 0 0 1 MAGIX chrX:49021528 3'AG 49021528 Downstream 40bp
chr20 5903069 5903069 1 + G A rs138069166 5903066 + 5903046 5903086 41 TTAAGAGACCCAGCTGATGCCTCGGAAGCCCACGAGTCCTC TTAAGAGACCCAGCTGATGCCTCAGAAGCCCACGAGTCCTC < 41bp 0.805158509343611 0.59680709632518 0.08712268 0.058603495 prediction 0.416702826036862 Functional Loss - CHGB ENSG00000089199 CDS Human protein_coding chr20:5903066 chr20:5903069 synonymous SNV . 0 24 hm5C_associated_SNPs_91283 0 0 0 0 1 CHGB chr20:5902981 3'AG 5902981 Downstream 89bp
chr6 26409783 26409783 1 + G A BLCA 26409780 + 26409760 26409800 41 GACCCCTTCTTCAGGAGCGCCCAGAGGTGGATCGCCGCCCT GACCCCTTCTTCAGGAGCGCCCAAAGGTGGATCGCCGCCCT < 41bp 0.708349524478922 0.462125619147173 0.8258537 0.26257476 prediction 0.416699048957844 Functional Loss - BTN3A1 ENSG00000026950 CDS Human protein_coding chr6:26409780 chr6:26409783 synonymous SNV . 0 24 hm5C_associated_SNPs_91284 0 0 1 0 1 BTN3A1 chr6:26409761 3'AG 26409761 Downstream 23bp
chr16 5128005 5128005 1 + C T SKCM 5128003 + 5127983 5128023 41 GAAGCTGGGCAGCATGCACTCTCCGTTCAGGGCCCGGTAGG GAAGCTGGGCAGCATGCACTCTTCGTTCAGGGCCCGGTAGG < 41bp 0.864427839723953 0.656079290831509 0.15239438 0.06221649 prediction 0.416697097784888 Functional Loss - ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128003 chr16:5128005 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_91285 0 0 1 0 2 ALG1 chr16:5127908 3'AG 5127908 Downstream 98bp
chr16 5128005 5128005 1 + C T SKCM 5128003 + 5127983 5128023 41 GAAGCTGGGCAGCATGCACTCTCCGTTCAGGGCCCGGTAGG GAAGCTGGGCAGCATGCACTCTTCGTTCAGGGCCCGGTAGG < 41bp 0.864427839723953 0.656079290831509 0.15239438 0.06221649 prediction 0.416697097784888 Functional Loss - ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128003 chr16:5128005 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_91285 0 0 1 0 2 ALG1 chr16:5128018 5'GT 5128018 Upstream 14bp
chr2 114697584 114697584 1 + G T UCEC 114697582 + 114697562 114697602 41 TATTAAACACATTCCAATCGCAGGACGAGATATAACATATT TATTAAACACATTCCAATCGCATGACGAGATATAACATATT < 41bp 0.708346277671593 0.377906337521852 0.38147432 0.03619635 prediction 0.416692555343186 Functional Loss - ACTR3 ENSG00000115091 CDS Human protein_coding chr2:114697582 chr2:114697584 stopgain 0.998 1 23 hm5C_associated_SNPs_91288 0 0 1 0 2 ACTR3 chr2:114697536 3'AG 114697536 Downstream 49bp
chr2 114697584 114697584 1 + G T UCEC 114697582 + 114697562 114697602 41 TATTAAACACATTCCAATCGCAGGACGAGATATAACATATT TATTAAACACATTCCAATCGCATGACGAGATATAACATATT < 41bp 0.708346277671593 0.377906337521852 0.38147432 0.03619635 prediction 0.416692555343186 Functional Loss - ACTR3 ENSG00000115091 CDS Human protein_coding chr2:114697582 chr2:114697584 stopgain 0.998 1 23 hm5C_associated_SNPs_91288 0 0 1 0 2 ACTR3 chr2:114697679 5'GT 114697679 Upstream 96bp
chr9 101602320 101602320 1 + C T UCEC 101602317 + 101602297 101602337 41 ATGTGACAGAGAGGAAGCAGCTCCGGGACAAGCTCCAGTGT ATGTGACAGAGAGGAAGCAGCTCTGGGACAAGCTCCAGTGT < 41bp 0.708342778946423 0.477286685431378 0.26090655 0.31010312 prediction 0.416685557892846 Functional Loss - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101602317 chr9:101602320 nonsynonymous SNV 0.706 4 24 hm5C_associated_SNPs_91291 0 0 1 0 2 GALNT12 chr9:101602284 3'AG 101602284 Downstream 37bp
chr9 101602320 101602320 1 + C T UCEC 101602317 + 101602297 101602337 41 ATGTGACAGAGAGGAAGCAGCTCCGGGACAAGCTCCAGTGT ATGTGACAGAGAGGAAGCAGCTCTGGGACAAGCTCCAGTGT < 41bp 0.708342778946423 0.477286685431378 0.26090655 0.31010312 prediction 0.416685557892846 Functional Loss - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101602317 chr9:101602320 nonsynonymous SNV 0.706 4 24 hm5C_associated_SNPs_91291 0 0 1 0 2 GALNT12 chr9:101602415 5'GT 101602415 Upstream 96bp
chr12 110013842 110013842 1 + C T COAD 110013839 + 110013819 110013859 41 CCTTGAACTTGAGAACATTCCTCCGGCTTCAACCCCACAGC CCTTGAACTTGAGAACATTCCTCTGGCTTCAACCCCACAGC < 41bp 0.708342753335395 0.477766485068942 0.28465384 0.17001617 prediction 0.41668550667079 Functional Loss - MVK ENSG00000110921 CDS Human protein_coding chr12:110013839 chr12:110013842 nonsynonymous SNV 0.972 2 24 hm5C_associated_SNPs_91292 0 0 1 0 1 MVK chr12:110013803 3'AG 110013803 Downstream 40bp
chr10 44104101 44104101 1 + C T rs45545532 44104099 + 44104079 44104119 41 GGATGTGGCTGTGGCCTTTACCCGGATTGAGTGGAGACACC GGATGTGGCTGTGGCCTTTACCTGGATTGAGTGGAGACACC < 41bp 0.843240103007181 0.634900751095891 0.83077854 0.22116259 prediction 0.41667870382258 Functional Loss - ZNF485 ENSG00000198298 CDS Human protein_coding chr10:44104099 chr10:44104101 nonsynonymous SNV 0.760 0 23 hm5C_associated_SNPs_91293 0 0 1 0 2 ZNF485 chr10:44104062 3'AG 44104062 Downstream 40bp
chr10 44104101 44104101 1 + C T rs45545532 44104099 + 44104079 44104119 41 GGATGTGGCTGTGGCCTTTACCCGGATTGAGTGGAGACACC GGATGTGGCTGTGGCCTTTACCTGGATTGAGTGGAGACACC < 41bp 0.843240103007181 0.634900751095891 0.83077854 0.22116259 prediction 0.41667870382258 Functional Loss - ZNF485 ENSG00000198298 CDS Human protein_coding chr10:44104099 chr10:44104101 nonsynonymous SNV 0.760 0 23 hm5C_associated_SNPs_91293 0 0 1 0 2 ZNF485 chr10:44104188 5'GT 44104188 Upstream 88bp
chr12 20874982 20874982 1 + A T LUSC 20874978 + 20874958 20874998 41 TGCAAAAATAATGGAAATGGCAAGAGGTAAGTCAAATTCTT TGCAAAAATAATGGAAATGGCAAGTGGTAAGTCAAATTCTT < 41bp 0.708339001699104 0.397841835943642 0.27712527 0.15443304 prediction 0.416678003398208 Functional Loss - SLCO1C1 ENSG00000139155 CDS Human protein_coding chr12:20874978 chr12:20874982 nonsynonymous SNV 0.993 0 25 hm5C_associated_SNPs_91294 0 0 0 0 1 SLCO1C1 chr12:20874983 5'GT 20874983 Upstream 2bp
chr19 15791309 15791309 1 + A C STAD 15791308 + 15791288 15791328 41 TCCTATATAACGATCTTCAACAAGAGTGCAAACATCATGCT TCCTATATAACGATCTTCAACCAGAGTGCAAACATCATGCT < 41bp 0.846169691298937 0.637831838402687 0.017198801 0.016474366 prediction 0.416675705792501 Functional Loss - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15791308 chr19:15791309 nonsynonymous SNV 0.010 0 22 hm5C_associated_SNPs_91296 0 0 1 1 1 CYP4F12 chr19:15791329 5'GT 15791329 Upstream 21bp
chr17 1674355 1674355 1 + C T SKCM 1674352 + 1674332 1674372 41 AGCGAACAGAATCCATCATTCACCGGGCTCTCTACTATGAC AGCGAACAGAATCCATCATTCACTGGGCTCTCTACTATGAC < 41bp 0.708337246457067 0.4897573959663 0.16474709 0.13985494 prediction 0.416674492914134 Functional Loss - SERPINF1 ENSG00000132386 CDS Human protein_coding chr17:1674352 chr17:1674355 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_91297 0 0 1 0 1 SERPINF1 chr17:1674323 3'AG 1674323 Downstream 33bp
chr8 43013804 43013804 1 + C T STAD 43013802 + 43013782 43013822 41 CTGCCTCTGTCAGCACCCAGCACGGATCTATCCTGCAGCTG CTGCCTCTGTCAGCACCCAGCATGGATCTATCCTGCAGCTG < 41bp 0.708335858180498 0.448701761829198 0.29363006 0.22498503 prediction 0.416671716360996 Functional Loss - HGSNAT ENSG00000165102 CDS Human protein_coding chr8:43013802 chr8:43013804 synonymous SNV . 0 23 hm5C_associated_SNPs_91298 0 0 0 0 2 HGSNAT chr8:43013718 3'AG 43013718 Downstream 87bp
chr8 43013804 43013804 1 + C T STAD 43013802 + 43013782 43013822 41 CTGCCTCTGTCAGCACCCAGCACGGATCTATCCTGCAGCTG CTGCCTCTGTCAGCACCCAGCATGGATCTATCCTGCAGCTG < 41bp 0.708335858180498 0.448701761829198 0.29363006 0.22498503 prediction 0.416671716360996 Functional Loss - HGSNAT ENSG00000165102 CDS Human protein_coding chr8:43013802 chr8:43013804 synonymous SNV . 0 23 hm5C_associated_SNPs_91298 0 0 0 0 2 HGSNAT chr8:43013854 5'GT 43013854 Upstream 51bp
chr1 15802980 15802980 1 + G A BRCA 15802977 + 15802957 15802997 41 AGTTGTGGGGTCTCCACTTACGCGCCTGATATGTCTAGGAT AGTTGTGGGGTCTCCACTTACGCACCTGATATGTCTAGGAT < 41bp 0.820235791310347 0.611909786585403 0.668586 0.374928 prediction 0.416652009449889 Functional Loss - CELA2B ENSG00000215704 CDS Human protein_coding chr1:15802977 chr1:15802980 synonymous SNV . 0 24 hm5C_associated_SNPs_91304 0 0 0 0 2 CELA2B chr1:15802952 3'AG 15802952 Downstream 29bp
chr1 15802980 15802980 1 + G A BRCA 15802977 + 15802957 15802997 41 AGTTGTGGGGTCTCCACTTACGCGCCTGATATGTCTAGGAT AGTTGTGGGGTCTCCACTTACGCACCTGATATGTCTAGGAT < 41bp 0.820235791310347 0.611909786585403 0.668586 0.374928 prediction 0.416652009449889 Functional Loss - CELA2B ENSG00000215704 CDS Human protein_coding chr1:15802977 chr1:15802980 synonymous SNV . 0 24 hm5C_associated_SNPs_91304 0 0 0 0 2 CELA2B chr1:15803040 5'GT 15803040 Upstream 61bp
chr16 841308 841308 1 + G A BLCA 841305 + 841285 841325 41 CCCCAGGCAAGTGGAAGAGCCACGAACAGGTGCTGGAGGAG CCCCAGGCAAGTGGAAGAGCCACAAACAGGTGCTGGAGGAG < 41bp 0.718184703604141 0.509859844488024 0.5341584 0.15333009 prediction 0.416649718232233 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:841305 chr16:841308 nonsynonymous SNV 0.950 1 24 hm5C_associated_SNPs_91305 0 0 1 0 1 CHTF18 chr16:841370 5'GT 841370 Upstream 63bp
chr2 79348734 79348734 1 + A C GBM 79348733 + 79348713 79348753 41 CCAGGCCCGGATCAGCTGCCCAGAAGGCACCAATGCCTATC CCAGGCCCGGATCAGCTGCCCCGAAGGCACCAATGCCTATC < 41bp 0.85627189997735 0.647949112538146 0.7401903 0.52725255 prediction 0.416645574878408 Functional Loss - REG1A ENSG00000115386 CDS Human protein_coding chr2:79348733 chr2:79348734 synonymous SNV . 0 22 hm5C_associated_SNPs_91308 0 0 0 0 2 REG1A chr2:79348688 3'AG 79348688 Downstream 47bp
chr2 79348734 79348734 1 + A C GBM 79348733 + 79348713 79348753 41 CCAGGCCCGGATCAGCTGCCCAGAAGGCACCAATGCCTATC CCAGGCCCGGATCAGCTGCCCCGAAGGCACCAATGCCTATC < 41bp 0.85627189997735 0.647949112538146 0.7401903 0.52725255 prediction 0.416645574878408 Functional Loss - REG1A ENSG00000115386 CDS Human protein_coding chr2:79348733 chr2:79348734 synonymous SNV . 0 22 hm5C_associated_SNPs_91308 0 0 0 0 2 REG1A chr2:79348806 5'GT 79348806 Upstream 73bp
chr7 148947615 148947615 1 + G T LUAD 148947612 + 148947592 148947632 41 TTCTGGATCCTGCGGCTGCCCCCGGGCAGCAAGGGGGAGGC TTCTGGATCCTGCGGCTGCCCCCTGGCAGCAAGGGGGAGGC < 41bp 0.708320526982786 0.30108500925203 0.46627823 0.059941053 prediction 0.416641053965571 Functional Loss - ZNF212 ENSG00000170260 CDS Human protein_coding chr7:148947612 chr7:148947615 synonymous SNV . 0 24 hm5C_associated_SNPs_91309 0 0 0 0 1 ZNF212 chr7:148947639 5'GT 148947639 Upstream 25bp
chr14 105935818 105935818 1 + G A COAD 105935815 + 105935795 105935835 41 TCTCATCAGGTCTGGCAAACCACGGACAGGCCAGGCACATG TCTCATCAGGTCTGGCAAACCACAGACAGGCCAGGCACATG < 41bp 0.804958452728135 0.59663882070019 0.057533503 0.021899551 prediction 0.41663926405589 Functional Loss - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105935815 chr14:105935818 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_91312 0 0 1 0 2 MTA1 chr14:105935804 3'AG 105935804 Downstream 15bp
chr14 105935818 105935818 1 + G A COAD 105935815 + 105935795 105935835 41 TCTCATCAGGTCTGGCAAACCACGGACAGGCCAGGCACATG TCTCATCAGGTCTGGCAAACCACAGACAGGCCAGGCACATG < 41bp 0.804958452728135 0.59663882070019 0.057533503 0.021899551 prediction 0.41663926405589 Functional Loss - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105935815 chr14:105935818 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_91312 0 0 1 0 2 MTA1 chr14:105935835 5'GT 105935835 Upstream 18bp
chr17 7983127 7983127 1 - G A HNSC 7983130 - 7983110 7983150 41 CGTCACAGACGACATGGTGGCTCCGTTCCTGGGCGAGGGAA CGTCACAGACGACATGGTGGCTCTGTTCCTGGGCGAGGGAA < 41bp 0.70831651211249 0.490189086135143 0.07415381 0.05882579 prediction 0.416633024224979 Functional Loss - ALOX12B ENSG00000179477 CDS Human protein_coding chr17:7983130 chr17:7983127 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_91313 0 0 0 0 1 ALOX12B chr17:7983087 5'GT 7983087 Upstream 41bp
chr5 169116287 169116287 1 + G T LUAD 169116284 + 169116264 169116304 41 ACCTAGTGCGATGGGGCAGCCGGGGCTTCCCTAAGGAGATT ACCTAGTGCGATGGGGCAGCCGGTGCTTCCCTAAGGAGATT < 41bp 0.708316006428002 0.346057663610777 0.88073456 0.28700057 prediction 0.416632012856004 Functional Loss - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169116284 chr5:169116287 nonsynonymous SNV 0.980 4 24 hm5C_associated_SNPs_91314 0 0 1 0 2 DOCK2 chr5:169116256 3'AG 169116256 Downstream 32bp
chr5 169116287 169116287 1 + G T LUAD 169116284 + 169116264 169116304 41 ACCTAGTGCGATGGGGCAGCCGGGGCTTCCCTAAGGAGATT ACCTAGTGCGATGGGGCAGCCGGTGCTTCCCTAAGGAGATT < 41bp 0.708316006428002 0.346057663610777 0.88073456 0.28700057 prediction 0.416632012856004 Functional Loss - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169116284 chr5:169116287 nonsynonymous SNV 0.980 4 24 hm5C_associated_SNPs_91314 0 0 1 0 2 DOCK2 chr5:169116337 5'GT 169116337 Upstream 51bp
chr19 42573112 42573112 1 + G T SARC 42573109 + 42573089 42573129 41 GGCACGGACATGCCAGGGGCCCGGGGTAAGTGAGAGCCCAA GGCACGGACATGCCAGGGGCCCGTGGTAAGTGAGAGCCCAA < 41bp 0.708310742476764 0.314716082503117 0.9016247 0.3947823 prediction 0.416621484953527 Functional Loss - ZNF574 ENSG00000105732 CDS Human protein_coding chr19:42573109 chr19:42573112 synonymous SNV . 0 24 hm5C_associated_SNPs_91318 0 0 0 0 1 ZNF574 chr19:42573113 5'GT 42573113 Upstream 2bp
chr10 105145226 105145226 1 + G A BRCA 105145223 + 105145203 105145243 41 ATATGGATATTATTTTGTGTCAGGGGGCCATGACCGAGTAG ATATGGATATTATTTTGTGTCAGAGGGCCATGACCGAGTAG < 41bp 0.801303673680708 0.592993887255115 0.950104 0.935755 prediction 0.416619572851185 Functional Loss - TAF5 ENSG00000148835 CDS Human protein_coding chr10:105145223 chr10:105145226 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_91319 0 0 0 0 1 TAF5 chr10:105145247 5'GT 105145247 Upstream 22bp
chr2 113251755 113251755 1 + G T OV 113251753 + 113251733 113251773 41 AGCCCTGAACTGGCTGAGTCCTGCACATGGTTCCCTGAATC AGCCCTGAACTGGCTGAGTCCTTCACATGGTTCCCTGAATC < 41bp 0.708305337928154 0.369253582202534 0.20310068 0.15551516 prediction 0.416610675856309 Functional Loss - TTL ENSG00000114999 CDS Human protein_coding chr2:113251753 chr2:113251755 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_91320 0 0 1 0 1 TTL chr2:113251720 3'AG 113251720 Downstream 36bp
chr10 70916779 70916779 1 + G A CESC 70916776 + 70916756 70916796 41 TTCTCAGAACTTTTCAATGACAAGAGTAATACTCATGAATT TTCTCAGAACTTTTCAATGACAAAAGTAATACTCATGAATT < 41bp 0.708430635280827 0.500131472017463 0.2873981 0.25730968 prediction 0.416598326526728 Functional Loss - VPS26A ENSG00000122958 CDS Human protein_coding chr10:70916776 chr10:70916779 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_91323 0 0 1 0 1 VPS26A chr10:70916763 3'AG 70916763 Downstream 17bp
chr1 207647600 207647600 1 + G A SARC 207647597 + 207647577 207647617 41 TCTCTGTAGGTACCAGTTGACTGGACATGCTTATCAGATGT TCTCTGTAGGTACCAGTTGACTGAACATGCTTATCAGATGT < 41bp 0.77754088648929 0.569242641346082 0.33745307 0.26444328 prediction 0.416596490286415 Functional Loss - CR2 ENSG00000117322 CDS Human protein_coding chr1:207647597 chr1:207647600 nonsynonymous SNV 0.878 3 24 hm5C_associated_SNPs_91324 0 0 0 0 2 CR2 chr1:207647586 3'AG 207647586 Downstream 15bp
chr1 207647600 207647600 1 + G A SARC 207647597 + 207647577 207647617 41 TCTCTGTAGGTACCAGTTGACTGGACATGCTTATCAGATGT TCTCTGTAGGTACCAGTTGACTGAACATGCTTATCAGATGT < 41bp 0.77754088648929 0.569242641346082 0.33745307 0.26444328 prediction 0.416596490286415 Functional Loss - CR2 ENSG00000117322 CDS Human protein_coding chr1:207647597 chr1:207647600 nonsynonymous SNV 0.878 3 24 hm5C_associated_SNPs_91324 0 0 0 0 2 CR2 chr1:207647668 5'GT 207647668 Upstream 69bp
chr3 53220231 53220231 1 + G T SARC 53220227 + 53220207 53220247 41 AGAGGAGAGTACTTTGCCATCAAGGCCCTCAAGAAGGATGT AGAGGAGAGTACTTTGCCATCAAGTCCCTCAAGAAGGATGT < 41bp 0.715930523589889 0.50763522945246 0.8394689 0.24931344 prediction 0.416590588274858 Functional Loss - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53220227 chr3:53220231 nonsynonymous SNV 0.422 1 25 hm5C_associated_SNPs_91327 0 0 0 0 1 PRKCD chr3:53220183 3'AG 53220183 Downstream 49bp
chr7 150417222 150417222 1 + G T SKCM 150417220 + 150417200 150417240 41 AGGGGCCGGGAAGAGCGCCACTGGGAACAGCATCCTGGGCC AGGGGCCGGGAAGAGCGCCACTTGGAACAGCATCCTGGGCC < 41bp 0.918384434930975 0.71009149451599 0.6876494 0.37049627 prediction 0.41658588082997 Functional Loss - GIMAP1;GIMAP1-GIMAP5 ENSG00000213203 CDS Human protein_coding chr7:150417220 chr7:150417222 nonsynonymous SNV 0.480 3 23 hm5C_associated_SNPs_91330 0 0 0 0 1 GIMAP1;GIMAP1-GIMAP5 chr7:150417136 3'AG 150417136 Downstream 87bp
chr1 1119399 1119399 1 + C T rs112690643 1119397 + 1119377 1119417 41 CCTACATGATCTTCTTTGGCCACGGCTATGCTCGCCTCACC CCTACATGATCTTCTTTGGCCATGGCTATGCTCGCCTCACC < 41bp 0.708289896847587 0.44238623299179 0.358037 0.3546592 prediction 0.416579793695173 Functional Loss - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1119397 chr1:1119399 synonymous SNV . 0 23 hm5C_associated_SNPs_91331 0 0 0 0 2 TTLL10 chr1:1119300 3'AG 1119300 Downstream 100bp
chr1 1119399 1119399 1 + C T rs112690643 1119397 + 1119377 1119417 41 CCTACATGATCTTCTTTGGCCACGGCTATGCTCGCCTCACC CCTACATGATCTTCTTTGGCCATGGCTATGCTCGCCTCACC < 41bp 0.708289896847587 0.44238623299179 0.358037 0.3546592 prediction 0.416579793695173 Functional Loss - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1119397 chr1:1119399 synonymous SNV . 0 23 hm5C_associated_SNPs_91331 0 0 0 0 2 TTLL10 chr1:1119471 5'GT 1119471 Upstream 73bp
chr1 1119400 1119400 1 + G A UCEC 1119397 + 1119377 1119417 41 CCTACATGATCTTCTTTGGCCACGGCTATGCTCGCCTCACC CCTACATGATCTTCTTTGGCCACAGCTATGCTCGCCTCACC < 41bp 0.708289896847587 0.457902580589868 0.358037 0.23249829 prediction 0.416579793695173 Functional Loss - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1119397 chr1:1119400 nonsynonymous SNV 0.973 4 24 hm5C_associated_SNPs_91332 0 0 0 0 1 TTLL10 chr1:1119471 5'GT 1119471 Upstream 72bp
chr8 24199270 24199270 1 + G T UCEC 24199267 + 24199247 24199287 41 GGAACTAAGTGTGGCGATAACAAGGTAAGTTGAAATTGTGG GGAACTAAGTGTGGCGATAACAATGTAAGTTGAAATTGTGG < 41bp 0.708289058112966 0.328181512802888 0.9039004 0.4912981 prediction 0.416578116225931 Functional Loss - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24199267 chr8:24199270 nonsynonymous SNV 0.167 1 24 hm5C_associated_SNPs_91333 0 0 0 1 1 ADAM28 chr8:24199270 5'GT 24199270 Upstream 1bp
chr6 41899507 41899507 1 + C T LUSC 41899504 + 41899484 41899524 41 GCGAGTCTGGCACTTGTACCCTCCGGGAAGCCATCATTGTG GCGAGTCTGGCACTTGTACCCTCTGGGAAGCCATCATTGTG < 41bp 0.772006476014779 0.563720148030542 0.110637665 0.08381382 prediction 0.416572655968474 Functional Loss - BYSL ENSG00000112578 CDS Human protein_coding chr6:41899504 chr6:41899507 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_91334 0 0 1 0 2 BYSL chr6:41899466 3'AG 41899466 Downstream 42bp
chr6 41899507 41899507 1 + C T LUSC 41899504 + 41899484 41899524 41 GCGAGTCTGGCACTTGTACCCTCCGGGAAGCCATCATTGTG GCGAGTCTGGCACTTGTACCCTCTGGGAAGCCATCATTGTG < 41bp 0.772006476014779 0.563720148030542 0.110637665 0.08381382 prediction 0.416572655968474 Functional Loss - BYSL ENSG00000112578 CDS Human protein_coding chr6:41899504 chr6:41899507 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_91334 0 0 1 0 2 BYSL chr6:41899568 5'GT 41899568 Upstream 62bp
chr10 106974291 106974291 1 + G T LUSC 106974288 + 106974268 106974308 41 TGTGCCCTGGAAAAGCCCCTCGGGGCCTCCATGTGGTGACG TGTGCCCTGGAAAAGCCCCTCGGTGCCTCCATGTGGTGACG < 41bp 0.70828387884957 0.329203960417254 0.9025092 0.25161052 prediction 0.416567757699141 Functional Loss - SORCS3 ENSG00000156395 CDS Human protein_coding chr10:106974288 chr10:106974291 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_91336 0 0 0 1 2 SORCS3 chr10:106974200 3'AG 106974200 Downstream 92bp
chr10 106974291 106974291 1 + G T LUSC 106974288 + 106974268 106974308 41 TGTGCCCTGGAAAAGCCCCTCGGGGCCTCCATGTGGTGACG TGTGCCCTGGAAAAGCCCCTCGGTGCCTCCATGTGGTGACG < 41bp 0.70828387884957 0.329203960417254 0.9025092 0.25161052 prediction 0.416567757699141 Functional Loss - SORCS3 ENSG00000156395 CDS Human protein_coding chr10:106974288 chr10:106974291 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_91336 0 0 0 1 2 SORCS3 chr10:106974371 5'GT 106974371 Upstream 81bp
chr1 26524491 26524491 1 + G A UCEC 26524488 + 26524468 26524508 41 TGTGCATGGCGGTGGAGCCCCTCGCCCGGATCATCCGCGTC TGTGCATGGCGGTGGAGCCCCTCACCCGGATCATCCGCGTC < 41bp 0.708282120314587 0.447675180680422 0.15393206 0.11866152 prediction 0.416564240629174 Functional Loss - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26524488 chr1:26524491 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_91338 0 0 0 0 2 CATSPER4 chr1:26524448 3'AG 26524448 Downstream 44bp
chr1 26524491 26524491 1 + G A UCEC 26524488 + 26524468 26524508 41 TGTGCATGGCGGTGGAGCCCCTCGCCCGGATCATCCGCGTC TGTGCATGGCGGTGGAGCCCCTCACCCGGATCATCCGCGTC < 41bp 0.708282120314587 0.447675180680422 0.15393206 0.11866152 prediction 0.416564240629174 Functional Loss - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26524488 chr1:26524491 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_91338 0 0 0 0 2 CATSPER4 chr1:26524568 5'GT 26524568 Upstream 78bp
chr6 110514412 110514412 1 + G T HNSC 110514409 + 110514389 110514429 41 ATTTGGAGACTGGAGTTCACCTTGACCCTGCCGTCAAAGAA ATTTGGAGACTGGAGTTCACCTTTACCCTGCCGTCAAAGAA < 41bp 0.708281766266736 0.336758341084784 0.1296607 0.0717946 prediction 0.416563532533472 Functional Loss - CDC40 ENSG00000168438 CDS Human protein_coding chr6:110514409 chr6:110514412 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_91340 0 0 1 0 2 CDC40 chr6:110514385 3'AG 110514385 Downstream 28bp
chr6 110514412 110514412 1 + G T HNSC 110514409 + 110514389 110514429 41 ATTTGGAGACTGGAGTTCACCTTGACCCTGCCGTCAAAGAA ATTTGGAGACTGGAGTTCACCTTTACCCTGCCGTCAAAGAA < 41bp 0.708281766266736 0.336758341084784 0.1296607 0.0717946 prediction 0.416563532533472 Functional Loss - CDC40 ENSG00000168438 CDS Human protein_coding chr6:110514409 chr6:110514412 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_91340 0 0 1 0 2 CDC40 chr6:110514471 5'GT 110514471 Upstream 60bp
chr5 23509647 23509647 1 + G T LUSC 23509644 + 23509624 23509664 41 GAATGGGCAGAGATGGGAGACTGGGAGAAAACTCGCTATAG GAATGGGCAGAGATGGGAGACTGTGAGAAAACTCGCTATAG < 41bp 0.708278803323575 0.319497355672084 0.6536429 0.29009593 prediction 0.416557606647149 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23509644 chr5:23509647 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_91345 0 0 0 0 2 PRDM9 chr5:23509579 3'AG 23509579 Downstream 69bp
chr5 23509647 23509647 1 + G T LUSC 23509644 + 23509624 23509664 41 GAATGGGCAGAGATGGGAGACTGGGAGAAAACTCGCTATAG GAATGGGCAGAGATGGGAGACTGTGAGAAAACTCGCTATAG < 41bp 0.708278803323575 0.319497355672084 0.6536429 0.29009593 prediction 0.416557606647149 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23509644 chr5:23509647 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_91345 0 0 0 0 2 PRDM9 chr5:23509702 5'GT 23509702 Upstream 56bp
chr19 43920085 43920085 1 + G A GBM 43920082 + 43920062 43920102 41 AGAAGAAGCCATGGGAACCCCTCGTATCCAGCATTTGCTGA AGAAGAAGCCATGGGAACCCCTCATATCCAGCATTTGCTGA < 41bp 0.808914209775583 0.600637167794932 0.10288936 0.18820632 prediction 0.416554083961303 Functional Loss - TEX101 ENSG00000131126 CDS Human protein_coding chr19:43920082 chr19:43920085 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_91346 0 0 0 0 2 TEX101 chr19:43920033 3'AG 43920033 Downstream 53bp
chr19 43920085 43920085 1 + G A GBM 43920082 + 43920062 43920102 41 AGAAGAAGCCATGGGAACCCCTCGTATCCAGCATTTGCTGA AGAAGAAGCCATGGGAACCCCTCATATCCAGCATTTGCTGA < 41bp 0.808914209775583 0.600637167794932 0.10288936 0.18820632 prediction 0.416554083961303 Functional Loss - TEX101 ENSG00000131126 CDS Human protein_coding chr19:43920082 chr19:43920085 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_91346 0 0 0 0 2 TEX101 chr19:43920135 5'GT 43920135 Upstream 51bp
chr10 99211944 99211944 1 + G A UCEC 99211941 + 99211921 99211961 41 CCTCCGAACCTACTCAGTGCCACGACTCTGCTGGCATTTCT CCTCCGAACCTACTCAGTGCCACAACTCTGCTGGCATTTCT < 41bp 0.783408918086551 0.575132193906904 0.07951853 0.06912908 prediction 0.416553448359294 Functional Loss - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99211941 chr10:99211944 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_91347 0 0 1 0 2 ZDHHC16 chr10:99211847 3'AG 99211847 Downstream 98bp
chr10 99211944 99211944 1 + G A UCEC 99211941 + 99211921 99211961 41 CCTCCGAACCTACTCAGTGCCACGACTCTGCTGGCATTTCT CCTCCGAACCTACTCAGTGCCACAACTCTGCTGGCATTTCT < 41bp 0.783408918086551 0.575132193906904 0.07951853 0.06912908 prediction 0.416553448359294 Functional Loss - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99211941 chr10:99211944 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_91347 0 0 1 0 2 ZDHHC16 chr10:99212041 5'GT 99212041 Upstream 98bp
chr14 96001624 96001624 1 + G A rs28680410 96001621 + 96001601 96001641 41 AAGGGGACGCCGGAGCAGCCCCAGTGCGGCTTCAGCAACGC AAGGGGACGCCGGAGCAGCCCCAATGCGGCTTCAGCAACGC < 41bp 0.708275642059794 0.466879018346389 0.23727763 0.20727661 prediction 0.416551284119587 Functional Loss - GLRX5 ENSG00000182512 CDS Human protein_coding chr14:96001621 chr14:96001624 synonymous SNV . 0 24 hm5C_associated_SNPs_91348 1 0 1 0 1 GLRX5 chr14:96001721 5'GT 96001721 Upstream 98bp
chr9 140108686 140108686 1 + C T SKCM 140108684 + 140108664 140108704 41 CCAAGTTCACCCTGCTGTTCCTCCAAGAGGCACCCAGCACG CCAAGTTCACCCTGCTGTTCCTTCAAGAGGCACCCAGCACG < 41bp 0.708274963846141 0.434769860855145 0.9697522 0.07863405 prediction 0.416549927692282 Functional Loss - NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140108684 chr9:140108686 synonymous SNV . 0 23 hm5C_associated_SNPs_91349 0 0 0 0 1 NDOR1 chr9:140108656 3'AG 140108656 Downstream 31bp
chr5 150867599 150867599 1 + C T rs199863918 150867596 + 150867576 150867616 41 CTGGTCATCTCCCTGGTGGGCTCCGTGAGCAGCAGCGCCCT CTGGTCATCTCCCTGGTGGGCTCTGTGAGCAGCAGCGCCCT < 41bp 0.708274810027022 0.493426620758716 0.18335205 0.17270973 prediction 0.416549620054044 Functional Loss - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150867596 chr5:150867599 synonymous SNV . 0 24 hm5C_associated_SNPs_91350 0 0 1 0 1 SLC36A1 chr5:150867544 3'AG 150867544 Downstream 56bp
chr12 119588935 119588935 1 + G T LUSC 119588933 + 119588913 119588953 41 TCCCGCAGCTCCTCCTATGCCAGCACCCGATCCTCCAGTCA TCCCGCAGCTCCTCCTATGCCATCACCCGATCCTCCAGTCA < 41bp 0.708271397023249 0.345761054297205 0.22439933 0.07107678 prediction 0.416542794046498 Functional Loss - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119588933 chr12:119588935 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_91352 0 0 1 0 1 SRRM4 chr12:119589025 5'GT 119589025 Upstream 91bp
chr8 75925224 75925224 1 + G T LUAD 75925221 + 75925201 75925241 41 TGCAACCCATATTGTCCATTCAGGTGTTCTGGCCCTGTATG TGCAACCCATATTGTCCATTCAGTTGTTCTGGCCCTGTATG < 41bp 0.708267311267234 0.310454627755936 0.8687399 0.18938556 prediction 0.416534622534468 Functional Loss - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75925221 chr8:75925224 nonsynonymous SNV 0.964 1 24 hm5C_associated_SNPs_91356 0 0 0 0 2 CRISPLD1 chr8:75925125 3'AG 75925125 Downstream 100bp
chr8 75925224 75925224 1 + G T LUAD 75925221 + 75925201 75925241 41 TGCAACCCATATTGTCCATTCAGGTGTTCTGGCCCTGTATG TGCAACCCATATTGTCCATTCAGTTGTTCTGGCCCTGTATG < 41bp 0.708267311267234 0.310454627755936 0.8687399 0.18938556 prediction 0.416534622534468 Functional Loss - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75925221 chr8:75925224 nonsynonymous SNV 0.964 1 24 hm5C_associated_SNPs_91356 0 0 0 0 2 CRISPLD1 chr8:75925257 5'GT 75925257 Upstream 34bp
chr5 139928645 139928645 1 + A C UCEC 139928644 + 139928624 139928664 41 GGAGCTGAAGGAGCAGGAGACAGAGGAAGAGATACCCGGTA GGAGCTGAAGGAGCAGGAGACCGAGGAAGAGATACCCGGTA < 41bp 0.708264352377977 0.432838474433613 0.9323911 0.899698 prediction 0.416528704755954 Functional Loss - ANKHD1-EIF4EBP3;EIF4EBP3 ENSG00000131503;ENSG00000243056;ENSG00000254996 CDS Human other chr5:139928644 chr5:139928645 synonymous SNV . 0 22 hm5C_associated_SNPs_91358 0 0 1 0 1 ANKHD1-EIF4EBP3;EIF4EBP3 chr5:139928661 5'GT 139928661 Upstream 17bp
chr10 114045969 114045969 1 + G A LUSC 114045966 + 114045946 114045986 41 GTGAACCAGGCTGCCTTTGACCAGAGGTAAGTTGCTGTGCG GTGAACCAGGCTGCCTTTGACCAAAGGTAAGTTGCTGTGCG < 41bp 0.802989694697945 0.594725356599877 0.92889154 0.50198764 prediction 0.416528676196136 Functional Loss - TECTB ENSG00000119913 CDS Human protein_coding chr10:114045966 chr10:114045969 synonymous SNV . 0 24 hm5C_associated_SNPs_91359 0 0 0 0 1 TECTB chr10:114045971 5'GT 114045971 Upstream 3bp
chr3 44903590 44903590 1 + G A HNSC 44903587 + 44903567 44903607 41 GCCCTGGCCGCCGCCTCCGCCAAGCTGGCCTTCGGCAGCGA GCCCTGGCCGCCGCCTCCGCCAAACTGGCCTTCGGCAGCGA < 41bp 0.809228433777179 0.600964558748111 0.84296644 0.7436079 prediction 0.416527750058135 Functional Loss - TMEM42 ENSG00000169964 CDS Human protein_coding chr3:44903587 chr3:44903590 synonymous SNV . 0 24 hm5C_associated_SNPs_91360 0 0 0 0 1 TMEM42 chr3:44903608 5'GT 44903608 Upstream 19bp
chr9 140846826 140846826 1 + C T SKCM 140846824 + 140846804 140846844 41 AACCTGGTGCTGGGCGTGCTCTCGGGGTGAGAGACCATGTG AACCTGGTGCTGGGCGTGCTCTTGGGGTGAGAGACCATGTG < 41bp 0.708263318948607 0.45196443311933 0.4423532 0.31190962 prediction 0.416526637897214 Functional Loss - CACNA1B ENSG00000148408 CDS Human protein_coding chr9:140846824 chr9:140846826 nonsynonymous SNV 0.210 5 23 hm5C_associated_SNPs_91361 0 0 0 0 1 CACNA1B chr9:140846829 5'GT 140846829 Upstream 4bp
chr9 140846827 140846827 1 + G A UCEC 140846824 + 140846804 140846844 41 AACCTGGTGCTGGGCGTGCTCTCGGGGTGAGAGACCATGTG AACCTGGTGCTGGGCGTGCTCTCAGGGTGAGAGACCATGTG < 41bp 0.708263318948607 0.473077084752655 0.4423532 0.18767482 prediction 0.416526637897214 Functional Loss - CACNA1B ENSG00000148408 CDS Human protein_coding chr9:140846824 chr9:140846827 synonymous SNV . 0 24 hm5C_associated_SNPs_91362 0 0 0 0 1 CACNA1B chr9:140846829 5'GT 140846829 Upstream 3bp
chr11 65629482 65629482 1 + G A rs148465534 65629479 + 65629459 65629499 41 GCCAGCTCGGCACTCAGGAGCCCGAGTGATACTGCTGGTGC GCCAGCTCGGCACTCAGGAGCCCAAGTGATACTGCTGGTGC < 41bp 0.828900223752484 0.620643919785883 0.6135399 0.6707053 prediction 0.416512607933202 Functional Loss - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65629479 chr11:65629482 nonsynonymous SNV 0.481 1 24 hm5C_associated_SNPs_91364 0 0 1 0 2 MUS81 chr11:65629418 3'AG 65629418 Downstream 65bp
chr11 65629482 65629482 1 + G A rs148465534 65629479 + 65629459 65629499 41 GCCAGCTCGGCACTCAGGAGCCCGAGTGATACTGCTGGTGC GCCAGCTCGGCACTCAGGAGCCCAAGTGATACTGCTGGTGC < 41bp 0.828900223752484 0.620643919785883 0.6135399 0.6707053 prediction 0.416512607933202 Functional Loss - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65629479 chr11:65629482 nonsynonymous SNV 0.481 1 24 hm5C_associated_SNPs_91364 0 0 1 0 2 MUS81 chr11:65629516 5'GT 65629516 Upstream 35bp
chr4 83372273 83372273 1 + G T UCEC 83372271 + 83372251 83372291 41 ATGGAGTGGATGATCTGCAACAGATGATCCAGGCCGTGGTA ATGGAGTGGATGATCTGCAACATATGATCCAGGCCGTGGTA < 41bp 0.708256064693482 0.35314223394925 0.7702673 0.034343958 prediction 0.416512129386964 Functional Loss - ENOPH1 ENSG00000145293 CDS Human protein_coding chr4:83372271 chr4:83372273 nonsynonymous SNV 0.015 0 23 hm5C_associated_SNPs_91365 0 0 1 0 1 ENOPH1 chr4:83372196 3'AG 83372196 Downstream 78bp
chr1 214507595 214507595 1 + G A STAD 214507592 + 214507572 214507612 41 TGGCCTCCATGTGGTTGAAGCTAGGGAGACTCTACATGGGC TGGCCTCCATGTGGTTGAAGCTAAGGAGACTCTACATGGGC < 41bp 0.708253116193299 0.469063868298832 0.13873729 0.058982283 prediction 0.416506232386597 Functional Loss - SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214507592 chr1:214507595 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_91366 0 0 1 0 2 SMYD2 chr1:214507543 3'AG 214507543 Downstream 53bp
chr1 214507595 214507595 1 + G A STAD 214507592 + 214507572 214507612 41 TGGCCTCCATGTGGTTGAAGCTAGGGAGACTCTACATGGGC TGGCCTCCATGTGGTTGAAGCTAAGGAGACTCTACATGGGC < 41bp 0.708253116193299 0.469063868298832 0.13873729 0.058982283 prediction 0.416506232386597 Functional Loss - SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214507592 chr1:214507595 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_91366 0 0 1 0 2 SMYD2 chr1:214507651 5'GT 214507651 Upstream 57bp
chr16 771425 771425 1 + C T rs145867712 771423 + 771403 771443 41 GCCCGGCTTCCGGCGCGTGCCGCTGCGGCTGCAGGTGCGGG GCCCGGCTTCCGGCGCGTGCCGTTGCGGCTGCAGGTGCGGG < 41bp 0.719803081339866 0.511550257892392 0.227294 0.094760776 prediction 0.416505646894946 Functional Loss - FAM173A ENSG00000103254 CDS Human protein_coding chr16:771423 chr16:771425 synonymous SNV . 0 23 hm5C_associated_SNPs_91367 0 0 1 0 1 FAM173A chr16:771436 5'GT 771436 Upstream 12bp
chr16 68087555 68087555 1 + G A COAD 68087552 + 68087532 68087572 41 GAGCAGAACAGGGTGGTCTTCCAGATGGTGAGAGACTCCAT GAGCAGAACAGGGTGGTCTTCCAAATGGTGAGAGACTCCAT < 41bp 0.806969178178564 0.598718667455513 0.8008251 0.8430396 prediction 0.416501021446102 Functional Loss - DUS2 ENSG00000167264 CDS Human protein_coding chr16:68087552 chr16:68087555 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_91368 0 0 1 0 2 DUS2 chr16:68087467 3'AG 68087467 Downstream 89bp
chr16 68087555 68087555 1 + G A COAD 68087552 + 68087532 68087572 41 GAGCAGAACAGGGTGGTCTTCCAGATGGTGAGAGACTCCAT GAGCAGAACAGGGTGGTCTTCCAAATGGTGAGAGACTCCAT < 41bp 0.806969178178564 0.598718667455513 0.8008251 0.8430396 prediction 0.416501021446102 Functional Loss - DUS2 ENSG00000167264 CDS Human protein_coding chr16:68087552 chr16:68087555 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_91368 0 0 1 0 2 DUS2 chr16:68087558 5'GT 68087558 Upstream 4bp
chr16 31367318 31367318 1 + T C rs2230424 31367317 + 31367297 31367337 41 GTGGTCCAGTATGCCAACTCCTGGTGAGGCCCAGGTGGTGC GTGGTCCAGTATGCCAACTCCCGGTGAGGCCCAGGTGGTGC < 41bp 0.708250318087692 0.46732940711932 0.28094172 0.18548033 prediction 0.416500636175384 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31367317 chr16:31367318 nonsynonymous SNV 0.915 0 22 hm5C_associated_SNPs_91369 0 0 0 0 1 ITGAX chr16:31367319 5'GT 31367319 Upstream 2bp
chr12 52283267 52283267 1 + G T LUSC 52283263 + 52283243 52283283 41 TGAAGGCTGCCATGCGGAACCGCTGTGAGTGCGTGGCCACC TGAAGGCTGCCATGCGGAACCGCTTTGAGTGCGTGGCCACC < 41bp 0.720597631366449 0.512350363862253 0.13277444 0.07249364 prediction 0.416494535008392 Functional Loss - ANKRD33;ANKRD33 ENSG00000167612;ENSG00000167612 exonic;splicing Human protein_coding chr12:52283263 chr12:52283267 nonsynonymous SNV 0.067 1 25 hm5C_associated_SNPs_91373 0 0 0 0 1 ANKRD33 chr12:52283296 5'GT 52283296 Upstream 30bp
chr19 54627955 54627955 1 + C T STAD 54627953 + 54627933 54627973 41 GCTCGGGGCCCAGCGCAAGACGCTGTCGGGCTTCTCGTCTA GCTCGGGGCCCAGCGCAAGACGTTGTCGGGCTTCTCGTCTA < 41bp 0.859625786770698 0.651380328458942 0.107053965 0.102093905 prediction 0.416490916623513 Functional Loss - PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54627953 chr19:54627955 synonymous SNV . 0 23 hm5C_associated_SNPs_91374 0 0 1 0 2 PRPF31 chr19:54627878 3'AG 54627878 Downstream 78bp
chr19 54627955 54627955 1 + C T STAD 54627953 + 54627933 54627973 41 GCTCGGGGCCCAGCGCAAGACGCTGTCGGGCTTCTCGTCTA GCTCGGGGCCCAGCGCAAGACGTTGTCGGGCTTCTCGTCTA < 41bp 0.859625786770698 0.651380328458942 0.107053965 0.102093905 prediction 0.416490916623513 Functional Loss - PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54627953 chr19:54627955 synonymous SNV . 0 23 hm5C_associated_SNPs_91374 0 0 1 0 2 PRPF31 chr19:54628035 5'GT 54628035 Upstream 81bp
chr17 41165172 41165172 1 + C T UCEC 41165169 + 41165149 41165189 41 ATTTGCGGATCCACTGCCCTCTGCTTGCGGGCTCTGCTCTG ATTTGCGGATCCACTGCCCTCTGTTTGCGGGCTCTGCTCTG < 41bp 0.747487699760378 0.539242257947071 0.07101548 0.037534356 prediction 0.416490883626613 Functional Loss - IFI35 ENSG00000068079 CDS Human protein_coding chr17:41165169 chr17:41165172 nonsynonymous SNV 0.761 1 24 hm5C_associated_SNPs_91375 0 0 1 0 1 IFI35 chr17:41165211 5'GT 41165211 Upstream 40bp
chrX 150885771 150885771 1 + G A UCEC 150885768 + 150885748 150885788 41 GATGGAGCTTGGATCTCGGTCCCGGGGTGCCTCCCAGAAGA GATGGAGCTTGGATCTCGGTCCCAGGGTGCCTCCCAGAAGA < 41bp 0.708242865938675 0.446179665290036 0.8581348 0.4704269 prediction 0.416485731877349 Functional Loss - FATE1 ENSG00000147378 CDS Human protein_coding chrX:150885768 chrX:150885771 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_91376 0 0 0 0 1 FATE1 chrX:150885744 3'AG 150885744 Downstream 28bp
chr16 318824 318824 1 + G A rs139307060 318821 + 318801 318841 41 CTCTTGGACGGGGCAGAGCTCGCGCCGAGACCTGCATGTCC CTCTTGGACGGGGCAGAGCTCGCACCGAGACCTGCATGTCC < 41bp 0.708239370860316 0.45200933110959 0.8344743 0.38888726 prediction 0.416478741720633 Functional Loss - RGS11 ENSG00000167930;ENSG00000269881 CDS Human other chr16:318821 chr16:318824 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_91378 0 0 0 0 1 RGS11 chr16:318775 3'AG 318775 Downstream 50bp
chr2 207482312 207482312 1 + G A SKCM 207482309 + 207482289 207482329 41 ACTCACTCTGGAAGAAATGTCAAGAAGAGAAGGTTCGATCC ACTCACTCTGGAAGAAATGTCAAAAAGAGAAGGTTCGATCC < 41bp 0.772762873058427 0.564526988560262 0.19789028 0.08708981 prediction 0.416471768996331 Functional Loss - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207482309 chr2:207482312 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_91382 0 0 1 0 1 ADAM23 chr2:207482303 3'AG 207482303 Downstream 10bp
chr16 19590381 19590381 1 + T C UCEC 19590380 + 19590360 19590400 41 TTCATTCTGTTTAGGCAAAGCTGGGACTGCCACATTGGCAA TTCATTCTGTTTAGGCAAAGCCGGGACTGCCACATTGGCAA < 41bp 0.810178374479454 0.601944736510357 0.26327667 0.53020483 prediction 0.416467275938194 Functional Loss - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19590380 chr16:19590381 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_91384 0 0 1 0 2 C16orf62 chr16:19590374 3'AG 19590374 Downstream 8bp
chr16 19590381 19590381 1 + T C UCEC 19590380 + 19590360 19590400 41 TTCATTCTGTTTAGGCAAAGCTGGGACTGCCACATTGGCAA TTCATTCTGTTTAGGCAAAGCCGGGACTGCCACATTGGCAA < 41bp 0.810178374479454 0.601944736510357 0.26327667 0.53020483 prediction 0.416467275938194 Functional Loss - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19590380 chr16:19590381 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_91384 0 0 1 0 2 C16orf62 chr16:19590450 5'GT 19590450 Upstream 70bp
chr6 160184041 160184041 1 + C T UCEC 160184038 + 160184018 160184058 41 CTTGAAGAGGGCCACTGTGGCTCCGGAAGATGTGTCTGAGG CTTGAAGAGGGCCACTGTGGCTCTGGAAGATGTGTCTGAGG < 41bp 0.789586445933464 0.581355106588305 0.23936981 0.15203625 prediction 0.416462678690317 Functional Loss - ACAT2 ENSG00000120437 CDS Human protein_coding chr6:160184038 chr6:160184041 nonsynonymous SNV 0.305 4 24 hm5C_associated_SNPs_91385 0 0 1 0 2 ACAT2 chr6:160183951 3'AG 160183951 Downstream 91bp
chr6 160184041 160184041 1 + C T UCEC 160184038 + 160184018 160184058 41 CTTGAAGAGGGCCACTGTGGCTCCGGAAGATGTGTCTGAGG CTTGAAGAGGGCCACTGTGGCTCTGGAAGATGTGTCTGAGG < 41bp 0.789586445933464 0.581355106588305 0.23936981 0.15203625 prediction 0.416462678690317 Functional Loss - ACAT2 ENSG00000120437 CDS Human protein_coding chr6:160184038 chr6:160184041 nonsynonymous SNV 0.305 4 24 hm5C_associated_SNPs_91385 0 0 1 0 2 ACAT2 chr6:160184085 5'GT 160184085 Upstream 45bp
chr17 4434074 4434074 1 + G A LGG 4434071 + 4434051 4434091 41 TCTTCTACTTCGCCATCCCACTGGGCAGGTGAGAGCCGGAG TCTTCTACTTCGCCATCCCACTGAGCAGGTGAGAGCCGGAG < 41bp 0.70823036730786 0.455470041409353 0.39472726 0.28531387 prediction 0.416460734615721 Functional Loss - SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4434071 chr17:4434074 nonsynonymous SNV 0.914 4 24 hm5C_associated_SNPs_91386 0 0 0 0 1 SPNS2 chr17:4434078 5'GT 4434078 Upstream 5bp
chr16 18586150 18586150 1 + A T SARC 18586146 + 18586126 18586166 41 CTGTCGCTCTTTGGAAAATCCAACAGGGAACGCCTGAGGCC CTGTCGCTCTTTGGAAAATCCAACTGGGAACGCCTGAGGCC < 41bp 0.75531612382268 0.547086145723621 0.17647481 0.14120841 prediction 0.416459956198119 Functional Loss - ABCC6P1 ENSG00000256340 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:18586146 chr16:18586150 . . 0 25 hm5C_associated_SNPs_91387 0 0 0 0 2 ABCC6P1 chr16:18586083 3'AG 18586083 Downstream 68bp
chr16 18586150 18586150 1 + A T SARC 18586146 + 18586126 18586166 41 CTGTCGCTCTTTGGAAAATCCAACAGGGAACGCCTGAGGCC CTGTCGCTCTTTGGAAAATCCAACTGGGAACGCCTGAGGCC < 41bp 0.75531612382268 0.547086145723621 0.17647481 0.14120841 prediction 0.416459956198119 Functional Loss - ABCC6P1 ENSG00000256340 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:18586146 chr16:18586150 . . 0 25 hm5C_associated_SNPs_91387 0 0 0 0 2 ABCC6P1 chr16:18586208 5'GT 18586208 Upstream 59bp
chr14 37132197 37132197 1 + C T STAD 37132195 + 37132175 37132215 41 GCTTCGCATCGTGGAACTGGCCCAACTGGGCATCCGACCGT GCTTCGCATCGTGGAACTGGCCTAACTGGGCATCCGACCGT < 41bp 0.708229108505401 0.430426085440805 0.051888347 0.12492886 prediction 0.416458217010802 Functional Loss - PAX9 ENSG00000198807 CDS Human protein_coding chr14:37132195 chr14:37132197 stopgain 1.000 1 23 hm5C_associated_SNPs_91388 0 0 0 0 1 PAX9 chr14:37132102 3'AG 37132102 Downstream 96bp
chr1 11589905 11589905 1 + G A SKCM 11589902 + 11589882 11589922 41 CCCTGCGTGAACACGGGCTGCGGGAAGCCGGCGGTGCGGCC CCCTGCGTGAACACGGGCTGCGGAAAGCCGGCGGTGCGGCC < 41bp 0.815467883656004 0.607239446061191 0.8968227 0.7173485 prediction 0.416456875189627 Functional Loss - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11589902 chr1:11589905 synonymous SNV . 0 24 hm5C_associated_SNPs_91392 0 0 0 0 1 DISP3 chr1:11589844 3'AG 11589844 Downstream 62bp
chr10 18292127 18292127 1 + G A SKCM 18292124 + 18292104 18292144 41 CTTTGCCGTGCTCTTAAGCTCTGGACTTTCTATGAAGACTG CTTTGCCGTGCTCTTAAGCTCTGAACTTTCTATGAAGACTG < 41bp 0.789641853320674 0.581413914499574 0.18540323 0.08832461 prediction 0.416455877642198 Functional Loss - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18292124 chr10:18292127 nonsynonymous SNV 0.575 4 24 hm5C_associated_SNPs_91393 0 0 0 0 1 SLC39A12 chr10:18292100 3'AG 18292100 Downstream 28bp
chr19 10398442 10398442 1 + A T GBM 10398438 + 10398418 10398458 41 CCCCGCGACTTCTGGCAGCCCGTGATCTGCCACGCGCGCCT CCCCGCGACTTCTGGCAGCCCGTGTTCTGCCACGCGCGCCT < 41bp 0.894434530101094 0.686207692873358 0.39520472 0.27481806 prediction 0.416453674455471 Functional Loss - ICAM4 ENSG00000105371 CDS Human protein_coding chr19:10398438 chr19:10398442 nonsynonymous SNV 0.248 1 25 hm5C_associated_SNPs_91394 0 0 1 0 1 ICAM4 chr19:10398514 5'GT 10398514 Upstream 73bp
chr19 7975940 7975940 1 + C T ACC 7975937 + 7975917 7975957 41 ACGTCAAGCCCTCCAACATCCTGCTGGACGAGCGGGGCCAG ACGTCAAGCCCTCCAACATCCTGTTGGACGAGCGGGGCCAG < 41bp 0.7082243614669 0.490162188404589 0.029548645 0.024526775 prediction 0.4164487229338 Functional Loss - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7975937 chr19:7975940 synonymous SNV . 0 24 hm5C_associated_SNPs_91395 0 0 1 1 1 MAP2K7 chr19:7975865 3'AG 7975865 Downstream 76bp
chr20 2384383 2384383 1 + C T UCEC 2384381 + 2384361 2384401 41 CGGGAGCGTGTATACTCAAACACGAAGAAGATTGGGAGATG CGGGAGCGTGTATACTCAAACATGAAGAAGATTGGGAGATG < 41bp 0.865270218461358 0.657046154076458 0.24794278 0.2061705 prediction 0.416448128769799 Functional Loss - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2384381 chr20:2384383 nonsynonymous SNV 0.379 2 23 hm5C_associated_SNPs_91397 0 0 0 0 1 TGM6 chr20:2384469 5'GT 2384469 Upstream 87bp
chr17 4846211 4846211 1 + C T UCEC 4846208 + 4846188 4846228 41 GGGAGAGAAGCTCCGAGTACCTGCGTGCCCTCTTTGTCTAC GGGAGAGAAGCTCCGAGTACCTGTGTGCCCTCTTTGTCTAC < 41bp 0.737230221780819 0.529008960650866 0.05379367 0.036031753 prediction 0.416442522259907 Functional Loss - RNF167 ENSG00000108523 CDS Human protein_coding chr17:4846208 chr17:4846211 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91398 0 0 1 0 2 RNF167 chr17:4846146 3'AG 4846146 Downstream 66bp
chr17 4846211 4846211 1 + C T UCEC 4846208 + 4846188 4846228 41 GGGAGAGAAGCTCCGAGTACCTGCGTGCCCTCTTTGTCTAC GGGAGAGAAGCTCCGAGTACCTGTGTGCCCTCTTTGTCTAC < 41bp 0.737230221780819 0.529008960650866 0.05379367 0.036031753 prediction 0.416442522259907 Functional Loss - RNF167 ENSG00000108523 CDS Human protein_coding chr17:4846208 chr17:4846211 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91398 0 0 1 0 2 RNF167 chr17:4846236 5'GT 4846236 Upstream 26bp
chr9 133493263 133493263 1 + G T BRCA 133493260 + 133493240 133493280 41 AGACAAGCCTCTTCGTATCACTGGAGATGCATTTAAAGTAC AGACAAGCCTCTTCGTATCACTGTAGATGCATTTAAAGTAC < 41bp 0.936158209503944 0.727937759539659 0.36074093 0.05951518 prediction 0.41644089992857 Functional Loss - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133493260 chr9:133493263 nonsynonymous SNV 0.993 5 24 hm5C_associated_SNPs_91399 0 0 1 0 2 FUBP3 chr9:133493184 3'AG 133493184 Downstream 80bp
chr9 133493263 133493263 1 + G T BRCA 133493260 + 133493240 133493280 41 AGACAAGCCTCTTCGTATCACTGGAGATGCATTTAAAGTAC AGACAAGCCTCTTCGTATCACTGTAGATGCATTTAAAGTAC < 41bp 0.936158209503944 0.727937759539659 0.36074093 0.05951518 prediction 0.41644089992857 Functional Loss - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133493260 chr9:133493263 nonsynonymous SNV 0.993 5 24 hm5C_associated_SNPs_91399 0 0 1 0 2 FUBP3 chr9:133493282 5'GT 133493282 Upstream 20bp
chr5 5318335 5318335 1 + A C rs114190883 5318334 + 5318314 5318354 41 CCTCAGGCTGCCTCCTGCACCAGAAGCCTTCGGCCTCCCTG CCTCAGGCTGCCTCCTGCACCCGAAGCCTTCGGCCTCCCTG < 41bp 0.843555607069698 0.635338268308229 0.8965963 0.46359423 prediction 0.41643467752294 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5318334 chr5:5318335 nonsynonymous SNV 0.564 2 22 hm5C_associated_SNPs_91404 0 0 0 0 2 ADAMTS16 chr5:5318247 3'AG 5318247 Downstream 89bp
chr5 5318335 5318335 1 + A C rs114190883 5318334 + 5318314 5318354 41 CCTCAGGCTGCCTCCTGCACCAGAAGCCTTCGGCCTCCCTG CCTCAGGCTGCCTCCTGCACCCGAAGCCTTCGGCCTCCCTG < 41bp 0.843555607069698 0.635338268308229 0.8965963 0.46359423 prediction 0.41643467752294 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5318334 chr5:5318335 nonsynonymous SNV 0.564 2 22 hm5C_associated_SNPs_91404 0 0 0 0 2 ADAMTS16 chr5:5318394 5'GT 5318394 Upstream 60bp
chr12 57911160 57911160 1 - G A rs697221 57911163 - 57911143 57911183 41 GCTGAGTCATTGCCTTTCTCCTTCGGGACACTGTCCAGCTG GCTGAGTCATTGCCTTTCTCCTTTGGGACACTGTCCAGCTG < 41bp 0.762547980253312 0.554331209016813 0.046797454 0.064477235 prediction 0.416433542472998 Functional Loss - DDIT3 ENSG00000175197 CDS Human protein_coding chr12:57911163 chr12:57911160 synonymous SNV 0.981 0 24 hm5C_associated_SNPs_91405 0 0 1 0 2 DDIT3 chr12:57911207 3'AG 57911207 Downstream 48bp
chr12 57911160 57911160 1 - G A rs697221 57911163 - 57911143 57911183 41 GCTGAGTCATTGCCTTTCTCCTTCGGGACACTGTCCAGCTG GCTGAGTCATTGCCTTTCTCCTTTGGGACACTGTCCAGCTG < 41bp 0.762547980253312 0.554331209016813 0.046797454 0.064477235 prediction 0.416433542472998 Functional Loss - DDIT3 ENSG00000175197 CDS Human protein_coding chr12:57911163 chr12:57911160 synonymous SNV 0.981 0 24 hm5C_associated_SNPs_91405 0 0 1 0 2 DDIT3 chr12:57911221 3'AG 57911221 Downstream 62bp
chr2 85531453 85531453 1 + G A SKCM 85531450 + 85531430 85531470 41 CCCGCCCTCGCCATGAACGCCTCGATGTCCAGGTGAGTCCC CCCGCCCTCGCCATGAACGCCTCAATGTCCAGGTGAGTCCC < 41bp 0.817698152593449 0.609482743760472 0.92399955 0.70987844 prediction 0.416430817665954 Functional Loss - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85531450 chr2:85531453 synonymous SNV . 0 24 hm5C_associated_SNPs_91406 0 0 0 0 2 TCF7L1 chr2:85531378 3'AG 85531378 Downstream 76bp
chr2 85531453 85531453 1 + G A SKCM 85531450 + 85531430 85531470 41 CCCGCCCTCGCCATGAACGCCTCGATGTCCAGGTGAGTCCC CCCGCCCTCGCCATGAACGCCTCAATGTCCAGGTGAGTCCC < 41bp 0.817698152593449 0.609482743760472 0.92399955 0.70987844 prediction 0.416430817665954 Functional Loss - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85531450 chr2:85531453 synonymous SNV . 0 24 hm5C_associated_SNPs_91406 0 0 0 0 2 TCF7L1 chr2:85531461 5'GT 85531461 Upstream 9bp
chr5 421426 421426 1 + A C rs11745813 421425 + 421405 421445 41 TGTTGCGCTGCAGGTGCCCCCACGGTCGCGATGCGGGGCAG TGTTGCGCTGCAGGTGCCCCCCCGGTCGCGATGCGGGGCAG < 41bp 0.70821404236973 0.468293322924324 0.6173367 0.19921035 prediction 0.416428084739461 Functional Loss - AHRR ENSG00000063438 UTR5 Human protein_coding chr5:421425 chr5:421426 . . 0 22 hm5C_associated_SNPs_91409 0 0 0 0 1 AHRR chr5:421455 5'GT 421455 Upstream 30bp
chr22 44379853 44379853 1 + A C UCEC 44379849 + 44379829 44379869 41 CCCACAAGCATCCGCGGATTCAGCATGCACAGCATCGGGCC CCCACAAGCATCCGCGGATTCAGCCTGCACAGCATCGGGCC < 41bp 0.949065692101432 0.740852382719304 0.31389272 0.11996287 prediction 0.416426618764257 Functional Loss - SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44379849 chr22:44379853 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_91410 0 0 1 0 2 SAMM50 chr22:44379813 3'AG 44379813 Downstream 41bp
chr22 44379853 44379853 1 + A C UCEC 44379849 + 44379829 44379869 41 CCCACAAGCATCCGCGGATTCAGCATGCACAGCATCGGGCC CCCACAAGCATCCGCGGATTCAGCCTGCACAGCATCGGGCC < 41bp 0.949065692101432 0.740852382719304 0.31389272 0.11996287 prediction 0.416426618764257 Functional Loss - SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44379849 chr22:44379853 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_91410 0 0 1 0 2 SAMM50 chr22:44379880 5'GT 44379880 Upstream 28bp
chr19 56565093 56565093 1 + C T rs201338049 56565091 + 56565071 56565111 41 CACCTGAAGAGCCTGGATCTCACGGACAATGCCCTGGGTGA CACCTGAAGAGCCTGGATCTCATGGACAATGCCCTGGGTGA < 41bp 0.844291470175817 0.636078485105046 0.8862765 0.9088084 prediction 0.416425970141541 Functional Loss - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56565091 chr19:56565093 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_91411 0 0 0 0 2 NLRP5 chr19:56565004 3'AG 56565004 Downstream 90bp
chr19 56565093 56565093 1 + C T rs201338049 56565091 + 56565071 56565111 41 CACCTGAAGAGCCTGGATCTCACGGACAATGCCCTGGGTGA CACCTGAAGAGCCTGGATCTCATGGACAATGCCCTGGGTGA < 41bp 0.844291470175817 0.636078485105046 0.8862765 0.9088084 prediction 0.416425970141541 Functional Loss - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56565091 chr19:56565093 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_91411 0 0 0 0 2 NLRP5 chr19:56565174 5'GT 56565174 Upstream 82bp
chr6 102134199 102134199 1 + G A STAD 102134196 + 102134176 102134216 41 GATTGCAGGCACCTCCGAAACCCGATTCAGGTTTGCTGGAT GATTGCAGGCACCTCCGAAACCCAATTCAGGTTTGCTGGAT < 41bp 0.709010732800178 0.500800342429402 0.13524055 0.11341199 prediction 0.416420780741551 Functional Loss - GRIK2 ENSG00000164418 CDS Human protein_coding chr6:102134196 chr6:102134199 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_91413 0 0 0 0 1 GRIK2 chr6:102134228 5'GT 102134228 Upstream 30bp
chr11 44102744 44102744 1 + G T LUSC 44102742 + 44102722 44102762 41 CCTGCAGGACTTCGGGATGTCTGGGCTCCGCTTTGGCACGC CCTGCAGGACTTCGGGATGTCTTGGCTCCGCTTTGGCACGC < 41bp 0.916262860020523 0.708053904516537 0.90849537 0.123728424 prediction 0.416417911007972 Functional Loss - ACCS ENSG00000110455 CDS Human protein_coding chr11:44102742 chr11:44102744 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_91415 0 0 1 0 1 ACCS chr11:44102729 3'AG 44102729 Downstream 16bp
chr19 17337656 17337656 1 + A C rs200411700 17337655 + 17337635 17337675 41 CCCGGGGGCACCTGCATACTCACCCGCCTGGGCCTGGGCCC CCCGGGGGCACCTGCATACTCCCCCGCCTGGGCCTGGGCCC < 41bp 0.829367206254109 0.621160453402183 0.3372783 0.114732176 prediction 0.416413505703852 Functional Loss - OCEL1 ENSG00000099330 CDS Human protein_coding chr19:17337655 chr19:17337656 nonsynonymous SNV 0.057 1 22 hm5C_associated_SNPs_91417 0 0 1 0 1 OCEL1 chr19:17337678 5'GT 17337678 Upstream 23bp
chr11 61017438 61017438 1 + C T LUAD 61017435 + 61017415 61017455 41 AGCCTGCCCGACATCGTCTTCACCATCAATGGAGTCCAGTA AGCCTGCCCGACATCGTCTTCACTATCAATGGAGTCCAGTA < 41bp 0.769272973415227 0.561068638186951 0.10475835 0.17215148 prediction 0.416408670456554 Functional Loss - PGA5 ENSG00000229183;ENSG00000256713 CDS Human other chr11:61017435 chr11:61017438 synonymous SNV . 0 24 hm5C_associated_SNPs_91420 0 0 0 0 2 PGA5 chr11:61017388 3'AG 61017388 Downstream 51bp
chr11 61017438 61017438 1 + C T LUAD 61017435 + 61017415 61017455 41 AGCCTGCCCGACATCGTCTTCACCATCAATGGAGTCCAGTA AGCCTGCCCGACATCGTCTTCACTATCAATGGAGTCCAGTA < 41bp 0.769272973415227 0.561068638186951 0.10475835 0.17215148 prediction 0.416408670456554 Functional Loss - PGA5 ENSG00000229183;ENSG00000256713 CDS Human other chr11:61017435 chr11:61017438 synonymous SNV . 0 24 hm5C_associated_SNPs_91420 0 0 0 0 2 PGA5 chr11:61017486 5'GT 61017486 Upstream 49bp
chr10 82331222 82331222 1 + G T LUAD 82331220 + 82331200 82331240 41 GCAGAGATCACCAAGAAGTTCCGGGATGCTCTGGCCAATGA GCAGAGATCACCAAGAAGTTCCTGGATGCTCTGGCCAATGA < 41bp 0.708202692691283 0.345138413492729 0.70904064 0.22239715 prediction 0.416405385382566 Functional Loss - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82331220 chr10:82331222 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_91421 0 0 0 0 1 SH2D4B chr10:82331187 3'AG 82331187 Downstream 36bp
chrX 48382174 48382174 1 + G A rs3048 48382171 + 48382151 48382191 41 CACAAAGACATGACTACCAACGCGGGCCCCTTGCACCCATA CACAAAGACATGACTACCAACGCAGGCCCCTTGCACCCATA < 41bp 0.809535983550519 0.601334100811661 0.78991413 0.3887841 prediction 0.416403765477716 Functional Loss - EBP ENSG00000147155 CDS Human protein_coding chrX:48382171 chrX:48382174 synonymous SNV . 0 24 hm5C_associated_SNPs_91422 0 0 1 0 1 EBP chrX:48382087 3'AG 48382087 Downstream 88bp
chr22 24237116 24237116 1 + G C CESC 24237112 + 24237092 24237132 41 GCGGCCTGCTGGCCGAGCGCCTGCGCATCAGCCCGGACAGG GCGGCCTGCTGGCCGAGCGCCTGCCCATCAGCCCGGACAGG < 41bp 0.708201581321356 0.429123668346915 0.17680648 0.2642907 prediction 0.416403162642713 Functional Loss - MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237112 chr22:24237116 nonsynonymous SNV 0.992 0 25 hm5C_associated_SNPs_91423 0 0 1 0 1 MIF chr22:24237131 5'GT 24237131 Upstream 16bp
chr13 24858385 24858385 1 + C T UCEC 24858382 + 24858362 24858402 41 AGCCCTCGGTACCTGCAGCCCGGCGGGGAGCAGCTGGCCAT AGCCCTCGGTACCTGCAGCCCGGTGGGGAGCAGCTGGCCAT < 41bp 0.708448027583753 0.500248726101358 0.85424757 0.87731624 prediction 0.416398602964791 Functional Loss - SPATA13 ENSG00000182957;ENSG00000273167 CDS Human other chr13:24858382 chr13:24858385 synonymous SNV . 0 24 hm5C_associated_SNPs_91424 0 0 0 0 1 SPATA13 chr13:24858409 5'GT 24858409 Upstream 25bp
chr1 45223725 45223725 1 + G T LUAD 45223721 + 45223701 45223741 41 AGCAAAGTTCTCTCCCTCAGCCCGGGACGTCTTCCTCCTGA AGCAAAGTTCTCTCCCTCAGCCCGTGACGTCTTCCTCCTGA < 41bp 0.708197224535795 0.491922707276662 0.30155003 0.13159055 prediction 0.416394449071591 Functional Loss - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45223721 chr1:45223725 synonymous SNV . 0 25 hm5C_associated_SNPs_91427 0 0 1 0 2 KIF2C chr1:45223721 3'AG 45223721 Downstream 5bp
chr1 45223725 45223725 1 + G T LUAD 45223721 + 45223701 45223741 41 AGCAAAGTTCTCTCCCTCAGCCCGGGACGTCTTCCTCCTGA AGCAAAGTTCTCTCCCTCAGCCCGTGACGTCTTCCTCCTGA < 41bp 0.708197224535795 0.491922707276662 0.30155003 0.13159055 prediction 0.416394449071591 Functional Loss - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45223721 chr1:45223725 synonymous SNV . 0 25 hm5C_associated_SNPs_91427 0 0 1 0 2 KIF2C chr1:45223812 5'GT 45223812 Upstream 88bp
chr16 57765153 57765153 1 + C T LUAD 57765150 + 57765130 57765170 41 AGGACCCACGCCTGGGGGAGCTCCAGAAAATATTCGCTTGA AGGACCCACGCCTGGGGGAGCTCTAGAAAATATTCGCTTGA < 41bp 0.76741820474241 0.559222322328789 0.90098643 0.81177664 prediction 0.416391764827241 Functional Loss - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57765150 chr16:57765153 stopgain 0.003 0 24 hm5C_associated_SNPs_91429 0 0 0 0 1 DRC7 chr16:57765077 3'AG 57765077 Downstream 77bp
chr12 56733621 56733621 1 + G T KIRC 56733619 + 56733599 56733639 41 TGGGCCTCAGCCAACTCCTGCAGGTATGAAGTAGGGGCGTG TGGGCCTCAGCCAACTCCTGCATGTATGAAGTAGGGGCGTG < 41bp 0.708195495894846 0.34772789950883 0.8559768 0.39573878 prediction 0.416390991789693 Functional Loss - IL23A ENSG00000110944 CDS Human protein_coding chr12:56733619 chr12:56733621 nonsynonymous SNV 0.985 1 23 hm5C_associated_SNPs_91430 0 0 1 0 1 IL23A chr12:56733621 5'GT 56733621 Upstream 1bp
chr14 24035346 24035346 1 - C T BRCA 24035349 - 24035329 24035369 41 GCTATTCTGACTGCAGTGCACATGATCCGGAAGGTCCCTGA GCTATTCTGACTGCAGTGCACATAATCCGGAAGGTCCCTGA < 41bp 0.740515495058324 0.532320008122062 0.28990415 0.21647483 prediction 0.416390973872526 Functional Loss - AP1G2 ENSG00000213983 CDS Human protein_coding chr14:24035349 chr14:24035346 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_91431 0 0 1 0 2 AP1G2 chr14:24035273 5'GT 24035273 Upstream 74bp
chr14 24035346 24035346 1 - C T BRCA 24035349 - 24035329 24035369 41 GCTATTCTGACTGCAGTGCACATGATCCGGAAGGTCCCTGA GCTATTCTGACTGCAGTGCACATAATCCGGAAGGTCCCTGA < 41bp 0.740515495058324 0.532320008122062 0.28990415 0.21647483 prediction 0.416390973872526 Functional Loss - AP1G2 ENSG00000213983 CDS Human protein_coding chr14:24035349 chr14:24035346 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_91431 0 0 1 0 2 AP1G2 chr14:24035369 3'AG 24035369 Downstream 24bp
chr9 37762066 37762066 1 + G A rs376110227 37762063 + 37762043 37762083 41 CTGCAGATCGATGCGGAAGGCGAGTGCCAGGAGGGAGAGAT CTGCAGATCGATGCGGAAGGCGAATGCCAGGAGGGAGAGAT < 41bp 0.708195042539211 0.468317298842694 0.7478594 0.609307 prediction 0.416390085078423 Functional Loss - TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37762063 chr9:37762066 synonymous SNV . 0 24 hm5C_associated_SNPs_91432 0 0 1 0 1 TRMT10B chr9:37762114 5'GT 37762114 Upstream 49bp
chr3 45533224 45533224 1 + G A rs2128361 45533221 + 45533201 45533241 41 CCTGTGACCCTGCCCAACATCGCGTCTTTCACTGGCAAGGG CCTGTGACCCTGCCCAACATCGCATCTTTCACTGGCAAGGG < 41bp 0.828690881928626 0.620500426199969 0.2678632 0.14671838 prediction 0.416380911457315 Functional Loss - LARS2 ENSG00000011376 CDS Human protein_coding chr3:45533221 chr3:45533224 synonymous SNV . 0 24 hm5C_associated_SNPs_91433 1 0 1 0 1 LARS2 chr3:45533292 5'GT 45533292 Upstream 69bp
chr10 18254536 18254536 1 + G T LUSC 18254532 + 18254512 18254552 41 TGTCCCTCCAGGGTGTTTGTCTGGGACAAGGAAACTTGCCT TGTCCCTCCAGGGTGTTTGTCTGGTACAAGGAAACTTGCCT < 41bp 0.708436218359274 0.500247055806928 0.93017435 0.92635655 prediction 0.416378325104692 Functional Loss - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18254532 chr10:18254536 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_91434 0 0 0 0 1 SLC39A12 chr10:18254619 5'GT 18254619 Upstream 84bp
chrX 128873207 128873207 1 + G T LUAD 128873204 + 128873184 128873224 41 GACCCTATGGCCCGGGCTCACTGGGGCTGCTGCCCCTGGCT GACCCTATGGCCCGGGCTCACTGTGGCTGCTGCCCCTGGCT < 41bp 0.940018558429848 0.731829717765569 0.9429347 0.54058 prediction 0.416377681328558 Functional Loss - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128873204 chrX:128873207 nonsynonymous SNV 0.983 1 24 hm5C_associated_SNPs_91435 0 0 0 0 1 XPNPEP2 chrX:128873238 5'GT 128873238 Upstream 32bp
chr13 53617309 53617309 1 + C T rs34067666 53617306 + 53617286 53617326 41 AAAACAATGTCCTTGCCATTCGCCGAGAAATCGTGGCTCTG AAAACAATGTCCTTGCCATTCGCTGAGAAATCGTGGCTCTG < 41bp 0.708184927086991 0.482668731663009 0.10633245 0.18064612 prediction 0.416369854173982 Functional Loss - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53617306 chr13:53617309 stopgain 0.324 1 24 hm5C_associated_SNPs_91437 0 0 0 0 2 OLFM4 chr13:53617240 3'AG 53617240 Downstream 70bp
chr13 53617309 53617309 1 + C T rs34067666 53617306 + 53617286 53617326 41 AAAACAATGTCCTTGCCATTCGCCGAGAAATCGTGGCTCTG AAAACAATGTCCTTGCCATTCGCTGAGAAATCGTGGCTCTG < 41bp 0.708184927086991 0.482668731663009 0.10633245 0.18064612 prediction 0.416369854173982 Functional Loss - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53617306 chr13:53617309 stopgain 0.324 1 24 hm5C_associated_SNPs_91437 0 0 0 0 2 OLFM4 chr13:53617399 5'GT 53617399 Upstream 91bp
chr17 80678199 80678199 1 + G A PRAD 80678196 + 80678176 80678216 41 GCCGATTTACACCTTGATAACAAGAAGCTTGGAGAGATGCG GCCGATTTACACCTTGATAACAAAAAGCTTGGAGAGATGCG < 41bp 0.819393348715027 0.611208899402238 0.67428124 0.19146094 prediction 0.416368898625577 Functional Loss - FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80678196 chr17:80678199 synonymous SNV . 0 24 hm5C_associated_SNPs_91438 0 0 1 0 2 FN3KRP chr17:80678148 3'AG 80678148 Downstream 52bp
chr17 80678199 80678199 1 + G A PRAD 80678196 + 80678176 80678216 41 GCCGATTTACACCTTGATAACAAGAAGCTTGGAGAGATGCG GCCGATTTACACCTTGATAACAAAAAGCTTGGAGAGATGCG < 41bp 0.819393348715027 0.611208899402238 0.67428124 0.19146094 prediction 0.416368898625577 Functional Loss - FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80678196 chr17:80678199 synonymous SNV . 0 24 hm5C_associated_SNPs_91438 0 0 1 0 2 FN3KRP chr17:80678239 5'GT 80678239 Upstream 41bp
chr18 2608738 2608738 1 + G A BLCA 2608735 + 2608715 2608755 41 ATGAAAAATGTGCCAGTGAGCTTGAGTCCTTGGAGAAACAC ATGAAAAATGTGCCAGTGAGCTTAAGTCCTTGGAGAAACAC < 41bp 0.762384810290984 0.5542011636305 0.14636523 0.1895844 prediction 0.416367293320967 Functional Loss - NDC80 ENSG00000080986 CDS Human protein_coding chr18:2608735 chr18:2608738 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_91440 0 0 1 0 2 NDC80 chr18:2608699 3'AG 2608699 Downstream 40bp
chr18 2608738 2608738 1 + G A BLCA 2608735 + 2608715 2608755 41 ATGAAAAATGTGCCAGTGAGCTTGAGTCCTTGGAGAAACAC ATGAAAAATGTGCCAGTGAGCTTAAGTCCTTGGAGAAACAC < 41bp 0.762384810290984 0.5542011636305 0.14636523 0.1895844 prediction 0.416367293320967 Functional Loss - NDC80 ENSG00000080986 CDS Human protein_coding chr18:2608735 chr18:2608738 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_91440 0 0 1 0 2 NDC80 chr18:2608829 5'GT 2608829 Upstream 92bp
chr16 72133714 72133714 1 + G A rs534306131 72133711 + 72133691 72133731 41 GCCTACTCCTCCGAGGACTACGTGAGGAGGCGGGAGCAGCA GCCTACTCCTCCGAGGACTACGTAAGGAGGCGGGAGCAGCA < 41bp 0.708182225863589 0.463156675002181 0.6586814 0.29447645 prediction 0.416364451727179 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72133711 chr16:72133714 synonymous SNV . 0 24 hm5C_associated_SNPs_91441 0 0 1 0 2 DHX38 chr16:72133631 3'AG 72133631 Downstream 84bp
chr16 72133714 72133714 1 + G A rs534306131 72133711 + 72133691 72133731 41 GCCTACTCCTCCGAGGACTACGTGAGGAGGCGGGAGCAGCA GCCTACTCCTCCGAGGACTACGTAAGGAGGCGGGAGCAGCA < 41bp 0.708182225863589 0.463156675002181 0.6586814 0.29447645 prediction 0.416364451727179 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72133711 chr16:72133714 synonymous SNV . 0 24 hm5C_associated_SNPs_91441 0 0 1 0 2 DHX38 chr16:72133786 5'GT 72133786 Upstream 73bp
chr14 94733313 94733313 1 + G A SKCM 94733310 + 94733290 94733330 41 TTCTAGTAAAAGTTCTACAACAGGATATACAACTTCTGTCT TTCTAGTAAAAGTTCTACAACAGAATATACAACTTCTGTCT < 41bp 0.708180599814283 0.477574625875129 0.8844771 0.48881158 prediction 0.416361199628566 Functional Loss - PPP4R4 ENSG00000119698 CDS Human protein_coding chr14:94733310 chr14:94733313 nonsynonymous SNV 0.480 1 24 hm5C_associated_SNPs_91442 0 0 0 0 2 PPP4R4 chr14:94733296 3'AG 94733296 Downstream 18bp
chr14 94733313 94733313 1 + G A SKCM 94733310 + 94733290 94733330 41 TTCTAGTAAAAGTTCTACAACAGGATATACAACTTCTGTCT TTCTAGTAAAAGTTCTACAACAGAATATACAACTTCTGTCT < 41bp 0.708180599814283 0.477574625875129 0.8844771 0.48881158 prediction 0.416361199628566 Functional Loss - PPP4R4 ENSG00000119698 CDS Human protein_coding chr14:94733310 chr14:94733313 nonsynonymous SNV 0.480 1 24 hm5C_associated_SNPs_91442 0 0 0 0 2 PPP4R4 chr14:94733366 5'GT 94733366 Upstream 54bp
chr11 58714634 58714634 1 + T C ESCA 58714633 + 58714613 58714653 41 CCAGGAGCATCCCTGAGTCCCTGAAGGTCAGGGAACAGTGG CCAGGAGCATCCCTGAGTCCCCGAAGGTCAGGGAACAGTGG < 41bp 0.728142053718286 0.519963342387178 0.2511528 0.19009343 prediction 0.416357422662214 Functional Loss - GLYATL1 ENSG00000166840 CDS Human protein_coding chr11:58714633 chr11:58714634 nonsynonymous SNV 0.033 1 22 hm5C_associated_SNPs_91446 0 0 0 0 1 GLYATL1 chr11:58714638 5'GT 58714638 Upstream 5bp
chr20 52831931 52831931 1 + C T SKCM 52831928 + 52831908 52831948 41 CCTTATCAAATTGGTGATGTCTTCATTAGCCATTCTCAAGA CCTTATCAAATTGGTGATGTCTTTATTAGCCATTCTCAAGA < 41bp 0.777732431894485 0.569554938007432 0.66321397 0.086443156 prediction 0.416354987774106 Functional Loss - PFDN4 ENSG00000101132 CDS Human protein_coding chr20:52831928 chr20:52831931 synonymous SNV . 0 24 hm5C_associated_SNPs_91448 0 0 1 0 2 PFDN4 chr20:52831839 3'AG 52831839 Downstream 93bp
chr20 52831931 52831931 1 + C T SKCM 52831928 + 52831908 52831948 41 CCTTATCAAATTGGTGATGTCTTCATTAGCCATTCTCAAGA CCTTATCAAATTGGTGATGTCTTTATTAGCCATTCTCAAGA < 41bp 0.777732431894485 0.569554938007432 0.66321397 0.086443156 prediction 0.416354987774106 Functional Loss - PFDN4 ENSG00000101132 CDS Human protein_coding chr20:52831928 chr20:52831931 synonymous SNV . 0 24 hm5C_associated_SNPs_91448 0 0 1 0 2 PFDN4 chr20:52831979 5'GT 52831979 Upstream 49bp
chr11 118518706 118518706 1 + G A UCEC 118518703 + 118518683 118518723 41 AGGAGCGGCGGAGGCGTGAGCAGGTAGAACGGAGGCTGCAG AGGAGCGGCGGAGGCGTGAGCAGATAGAACGGAGGCTGCAG < 41bp 0.798897408101346 0.590723492087552 0.9016026 0.88753545 prediction 0.416347832027588 Functional Loss - PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118518703 chr11:118518706 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_91450 0 0 1 0 2 PHLDB1 chr11:118518646 3'AG 118518646 Downstream 61bp
chr11 118518706 118518706 1 + G A UCEC 118518703 + 118518683 118518723 41 AGGAGCGGCGGAGGCGTGAGCAGGTAGAACGGAGGCTGCAG AGGAGCGGCGGAGGCGTGAGCAGATAGAACGGAGGCTGCAG < 41bp 0.798897408101346 0.590723492087552 0.9016026 0.88753545 prediction 0.416347832027588 Functional Loss - PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118518703 chr11:118518706 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_91450 0 0 1 0 2 PHLDB1 chr11:118518792 5'GT 118518792 Upstream 87bp
chr11 62556780 62556780 1 + C T UCEC 62556777 + 62556757 62556797 41 CTTTCAGAGGTGCTATAGGGCTGCGCATTGCACTGGCCATC CTTTCAGAGGTGCTATAGGGCTGTGCATTGCACTGGCCATC < 41bp 0.708386270252024 0.500214700295621 0.071020395 0.06003332 prediction 0.416343139912806 Functional Loss - TMEM179B ENSG00000185475 CDS Human protein_coding chr11:62556777 chr11:62556780 nonsynonymous SNV 0.841 0 24 hm5C_associated_SNPs_91451 0 0 1 0 1 TMEM179B chr11:62556764 3'AG 62556764 Downstream 17bp
chr22 24038805 24038805 1 + G A HNSC 24038802 + 24038782 24038822 41 TGTCGCTGACACCTGGCAGGCGGGGAGCTTTAAGGTGGCCA TGTCGCTGACACCTGGCAGGCGGAGAGCTTTAAGGTGGCCA < 41bp 0.811284330769052 0.603113988528532 0.9014816 0.8115659 prediction 0.416340684481039 Functional Loss - RGL4 ENSG00000159496 CDS Human protein_coding chr22:24038802 chr22:24038805 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_91452 0 0 0 0 2 RGL4 chr22:24038801 3'AG 24038801 Downstream 5bp
chr22 24038805 24038805 1 + G A HNSC 24038802 + 24038782 24038822 41 TGTCGCTGACACCTGGCAGGCGGGGAGCTTTAAGGTGGCCA TGTCGCTGACACCTGGCAGGCGGAGAGCTTTAAGGTGGCCA < 41bp 0.811284330769052 0.603113988528532 0.9014816 0.8115659 prediction 0.416340684481039 Functional Loss - RGL4 ENSG00000159496 CDS Human protein_coding chr22:24038802 chr22:24038805 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_91452 0 0 0 0 2 RGL4 chr22:24038875 5'GT 24038875 Upstream 71bp
chr10 121429597 121429597 1 + C T OV 121429594 + 121429574 121429614 41 CTCAGAGGTCCCAGTCACCTCTGCGGGGCATGCCAGAAACC CTCAGAGGTCCCAGTCACCTCTGTGGGGCATGCCAGAAACC < 41bp 0.753865056568417 0.545694973667728 0.21330357 0.1051622 prediction 0.416340165801379 Functional Loss - BAG3 ENSG00000151929 CDS Human protein_coding chr10:121429594 chr10:121429597 nonsynonymous SNV 0.164 2 24 hm5C_associated_SNPs_91453 5 0 1 0 1 BAG3 chr10:121429689 5'GT 121429689 Upstream 93bp
chr2 58276079 58276079 1 + G A ESCA 58276076 + 58276056 58276096 41 ACTGGGCAAGAAGATTGGCTCTGGAGGATTTGGATTGATAT ACTGGGCAAGAAGATTGGCTCTGAAGGATTTGGATTGATAT < 41bp 0.742881328797954 0.534711337588621 0.76562405 0.2612961 prediction 0.416339982418666 Functional Loss - VRK2 ENSG00000028116 CDS Human protein_coding chr2:58276076 chr2:58276079 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91454 0 0 1 0 2 VRK2 chr2:58276016 3'AG 58276016 Downstream 64bp
chr2 58276079 58276079 1 + G A ESCA 58276076 + 58276056 58276096 41 ACTGGGCAAGAAGATTGGCTCTGGAGGATTTGGATTGATAT ACTGGGCAAGAAGATTGGCTCTGAAGGATTTGGATTGATAT < 41bp 0.742881328797954 0.534711337588621 0.76562405 0.2612961 prediction 0.416339982418666 Functional Loss - VRK2 ENSG00000028116 CDS Human protein_coding chr2:58276076 chr2:58276079 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91454 0 0 1 0 2 VRK2 chr2:58276102 5'GT 58276102 Upstream 24bp
chr19 14551126 14551126 1 + G A UCEC 14551123 + 14551103 14551143 41 ATGGCGGAGGCCAATAACCCCTCGGAGCAGGAGCTGGAGGT ATGGCGGAGGCCAATAACCCCTCAGAGCAGGAGCTGGAGGT < 41bp 0.708169946435236 0.465014681998479 0.27747834 0.17324618 prediction 0.416339892870472 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14551123 chr19:14551126 synonymous SNV . 0 24 hm5C_associated_SNPs_91455 0 0 0 0 1 PKN1 chr19:14551141 5'GT 14551141 Upstream 16bp
chr20 31643347 31643347 1 + G A PRAD 31643344 + 31643324 31643364 41 CTCGGATTGACAAGGATGAACTCGGCAAAGGTGAGCCCCAG CTCGGATTGACAAGGATGAACTCAGCAAAGGTGAGCCCCAG < 41bp 0.80427658128331 0.59610663556885 0.34101242 0.3222471 prediction 0.41633989142892 Functional Loss - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31643344 chr20:31643347 nonsynonymous SNV 0.973 0 24 hm5C_associated_SNPs_91456 0 0 0 0 1 BPIFB3 chr20:31643353 5'GT 31643353 Upstream 7bp
chr14 93813674 93813674 1 + C T SKCM 93813672 + 93813652 93813692 41 ACTACCGCCGCTTGGCCCTGCTCGGCCTGCAGCCCGCTCCC ACTACCGCCGCTTGGCCCTGCTTGGCCTGCAGCCCGCTCCC < 41bp 0.761931074673354 0.553770450399255 0.9167925 0.85157007 prediction 0.416321248548199 Functional Loss - COX8C ENSG00000187581 CDS Human protein_coding chr14:93813672 chr14:93813674 synonymous SNV . 0 23 hm5C_associated_SNPs_91459 0 0 0 0 1 COX8C chr14:93813740 5'GT 93813740 Upstream 67bp
chr10 135369376 135369376 1 - C T SKCM 135369379 - 135369359 135369399 41 GTCAAGGCGACACTGGAAGACGTGAAGCATCAGCTGTGCTC GTCAAGGCGACACTGGAAGACGTAAAGCATCAGCTGTGCTC < 41bp 0.809763334635454 0.601607576209368 0.18166691 0.17280355 prediction 0.416311516852173 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135369379 chr10:135369376 synonymous SNV . 0 24 hm5C_associated_SNPs_91462 0 0 0 0 1 SYCE1 chr10:135369407 3'AG 135369407 Downstream 32bp
chr3 190122701 190122701 1 + C T PRAD 190122699 + 190122679 190122719 41 ATCTGCTTTGTTGCTGGAGCCACGTTACTAATAGCAGGTAC ATCTGCTTTGTTGCTGGAGCCATGTTACTAATAGCAGGTAC < 41bp 0.708154874146003 0.441341564203184 0.3759901 0.23782349 prediction 0.416309748292007 Functional Loss - CLDN16 ENSG00000113946 CDS Human protein_coding chr3:190122699 chr3:190122701 nonsynonymous SNV 0.940 1 23 hm5C_associated_SNPs_91463 0 0 0 0 1 CLDN16 chr3:190122715 5'GT 190122715 Upstream 15bp
chr1 32671801 32671801 1 + G T rs144417142 32671797 + 32671777 32671817 41 TCCGACGCCAGTTCCAGAGCCTGCGAGCTGAGTATGAGGCG TCCGACGCCAGTTCCAGAGCCTGCTAGCTGAGTATGAGGCG < 41bp 0.743149410929264 0.535001836177013 0.24776646 0.13846764 prediction 0.416295149504502 Functional Loss - IQCC ENSG00000160051 CDS Human protein_coding chr1:32671797 chr1:32671801 nonsynonymous SNV 0.991 4 25 hm5C_associated_SNPs_91466 0 0 0 0 2 IQCC chr1:32671755 3'AG 32671755 Downstream 47bp
chr1 32671801 32671801 1 + G T rs144417142 32671797 + 32671777 32671817 41 TCCGACGCCAGTTCCAGAGCCTGCGAGCTGAGTATGAGGCG TCCGACGCCAGTTCCAGAGCCTGCTAGCTGAGTATGAGGCG < 41bp 0.743149410929264 0.535001836177013 0.24776646 0.13846764 prediction 0.416295149504502 Functional Loss - IQCC ENSG00000160051 CDS Human protein_coding chr1:32671797 chr1:32671801 nonsynonymous SNV 0.991 4 25 hm5C_associated_SNPs_91466 0 0 0 0 2 IQCC chr1:32671898 5'GT 32671898 Upstream 98bp
chr7 889631 889631 1 + G A rs200884716 889628 + 889608 889648 41 ACTCGCAGTCGCCACGGCTGCCCGGTCGGGCAGGGACCCTC ACTCGCAGTCGCCACGGCTGCCCAGTCGGGCAGGGACCCTC < 41bp 0.79724360794336 0.58909691293603 0.1323838 0.053921103 prediction 0.416293390014659 Functional Loss - SUN1 ENSG00000164828 CDS Human protein_coding chr7:889628 chr7:889631 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_91467 0 0 1 0 2 SUN1 chr7:889560 3'AG 889560 Downstream 72bp
chr7 889631 889631 1 + G A rs200884716 889628 + 889608 889648 41 ACTCGCAGTCGCCACGGCTGCCCGGTCGGGCAGGGACCCTC ACTCGCAGTCGCCACGGCTGCCCAGTCGGGCAGGGACCCTC < 41bp 0.79724360794336 0.58909691293603 0.1323838 0.053921103 prediction 0.416293390014659 Functional Loss - SUN1 ENSG00000164828 CDS Human protein_coding chr7:889628 chr7:889631 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_91467 0 0 1 0 2 SUN1 chr7:889670 5'GT 889670 Upstream 40bp
chr8 99963840 99963840 1 + T C UCEC 99963839 + 99963819 99963859 41 ACCCATACAGACATCAAGCCCTACAGCTGCGAGCAGTGCGG ACCCATACAGACATCAAGCCCCACAGCTGCGAGCAGTGCGG < 41bp 0.708142283397654 0.446747519586484 0.15041104 0.047994733 prediction 0.416284566795307 Functional Loss - OSR2 ENSG00000164920 CDS Human protein_coding chr8:99963839 chr8:99963840 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_91470 0 0 0 0 2 OSR2 chr8:99963747 3'AG 99963747 Downstream 94bp
chr8 99963840 99963840 1 + T C UCEC 99963839 + 99963819 99963859 41 ACCCATACAGACATCAAGCCCTACAGCTGCGAGCAGTGCGG ACCCATACAGACATCAAGCCCCACAGCTGCGAGCAGTGCGG < 41bp 0.708142283397654 0.446747519586484 0.15041104 0.047994733 prediction 0.416284566795307 Functional Loss - OSR2 ENSG00000164920 CDS Human protein_coding chr8:99963839 chr8:99963840 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_91470 0 0 0 0 2 OSR2 chr8:99963829 3'AG 99963829 Downstream 12bp
chr6 144507854 144507854 1 + C T STAD 144507852 + 144507832 144507872 41 ACGATGAGTTTGACTCGCCCCACGAGGACATCGTGTTCGAG ACGATGAGTTTGACTCGCCCCATGAGGACATCGTGTTCGAG < 41bp 0.844006901897568 0.635869608411723 0.09996343 0.104983866 prediction 0.416274586971691 Functional Loss - STX11 ENSG00000135604 CDS Human protein_coding chr6:144507852 chr6:144507854 synonymous SNV . 0 23 hm5C_associated_SNPs_91472 0 0 0 0 1 STX11 chr6:144507760 3'AG 144507760 Downstream 95bp
chr8 27296601 27296601 1 + G T LUAD 27296597 + 27296577 27296617 41 CCTCCCCTGAGTGTGTGAAGCTGGGGGACTTTGGTCTTTCC CCTCCCCTGAGTGTGTGAAGCTGGTGGACTTTGGTCTTTCC < 41bp 0.724196516693091 0.516059848554385 0.8913932 0.42097366 prediction 0.416273336277411 Functional Loss - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27296597 chr8:27296601 nonsynonymous SNV 0.990 5 25 hm5C_associated_SNPs_91473 0 0 1 0 2 PTK2B chr8:27296548 3'AG 27296548 Downstream 54bp
chr8 27296601 27296601 1 + G T LUAD 27296597 + 27296577 27296617 41 CCTCCCCTGAGTGTGTGAAGCTGGGGGACTTTGGTCTTTCC CCTCCCCTGAGTGTGTGAAGCTGGTGGACTTTGGTCTTTCC < 41bp 0.724196516693091 0.516059848554385 0.8913932 0.42097366 prediction 0.416273336277411 Functional Loss - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27296597 chr8:27296601 nonsynonymous SNV 0.990 5 25 hm5C_associated_SNPs_91473 0 0 1 0 2 PTK2B chr8:27296648 5'GT 27296648 Upstream 48bp
chr9 124929146 124929146 1 + C T GBM 124929143 + 124929123 124929163 41 GGCGAGGGAACCCTGTACTTCCCCAGCGGAAGCCAATACGA GGCGAGGGAACCCTGTACTTCCCTAGCGGAAGCCAATACGA < 41bp 0.708128699265093 0.484997030544447 0.1475448 0.043113917 prediction 0.416257398530186 Functional Loss - MORN5 ENSG00000185681 CDS Human protein_coding chr9:124929143 chr9:124929146 synonymous SNV . 0 24 hm5C_associated_SNPs_91477 0 0 0 0 2 MORN5 chr9:124929047 3'AG 124929047 Downstream 100bp
chr9 124929146 124929146 1 + C T GBM 124929143 + 124929123 124929163 41 GGCGAGGGAACCCTGTACTTCCCCAGCGGAAGCCAATACGA GGCGAGGGAACCCTGTACTTCCCTAGCGGAAGCCAATACGA < 41bp 0.708128699265093 0.484997030544447 0.1475448 0.043113917 prediction 0.416257398530186 Functional Loss - MORN5 ENSG00000185681 CDS Human protein_coding chr9:124929143 chr9:124929146 synonymous SNV . 0 24 hm5C_associated_SNPs_91477 0 0 0 0 2 MORN5 chr9:124929194 5'GT 124929194 Upstream 49bp
chr19 3543589 3543589 1 + A T COAD 3543585 + 3543565 3543605 41 ACCTGCGGGAGACCGCCTGGCATGACCCCATCGTCCCTGCC ACCTGCGGGAGACCGCCTGGCATGTCCCCATCGTCCCTGCC < 41bp 0.708127895453685 0.396021110052113 0.031306773 0.026511967 prediction 0.41625579090737 Functional Loss - C19orf71 ENSG00000183397 CDS Human protein_coding chr19:3543585 chr19:3543589 nonsynonymous SNV 0.028 4 25 hm5C_associated_SNPs_91478 0 0 0 0 2 C19orf71 chr19:3543553 3'AG 3543553 Downstream 37bp
chr19 3543589 3543589 1 + A T COAD 3543585 + 3543565 3543605 41 ACCTGCGGGAGACCGCCTGGCATGACCCCATCGTCCCTGCC ACCTGCGGGAGACCGCCTGGCATGTCCCCATCGTCCCTGCC < 41bp 0.708127895453685 0.396021110052113 0.031306773 0.026511967 prediction 0.41625579090737 Functional Loss - C19orf71 ENSG00000183397 CDS Human protein_coding chr19:3543585 chr19:3543589 nonsynonymous SNV 0.028 4 25 hm5C_associated_SNPs_91478 0 0 0 0 2 C19orf71 chr19:3543678 5'GT 3543678 Upstream 90bp
chr5 133844151 133844151 1 + C T rs144832999 133844149 + 133844129 133844169 41 AGCACTTTGGGAGGCTGAGGCACGAGGATTGCTTGAGCCCA AGCACTTTGGGAGGCTGAGGCATGAGGATTGCTTGAGCCCA < 41bp 0.758637657061982 0.550510961003055 0.8863926 0.8876874 prediction 0.416253392117854 Functional Loss - LINC01843 ENSG00000251169 ncRNA_exonic Human lincRNA chr5:133844149 chr5:133844151 . . 0 23 hm5C_associated_SNPs_91479 0 0 0 0 1 LINC01843 chr5:133844097 3'AG 133844097 Downstream 55bp
chr7 101200735 101200735 1 + C T CESC 101200733 + 101200713 101200753 41 TGAAGAGGGGTGGCGCCCAACCCGATGGGGTCCTTGCTGCC TGAAGAGGGGTGGCGCCCAACCTGATGGGGTCCTTGCTGCC < 41bp 0.70812554657452 0.460660875057465 0.21614546 0.2416769 prediction 0.416251093149041 Functional Loss - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101200733 chr7:101200735 synonymous SNV . 0 23 hm5C_associated_SNPs_91480 0 0 0 0 1 COL26A1 chr7:101200651 3'AG 101200651 Downstream 85bp
chr2 166179700 166179700 1 + C T SKCM 166179697 + 166179677 166179717 41 CATCCGTGGCTCCCTTTTCTCTCCAAGACGCAACAGTAGGG CATCCGTGGCTCCCTTTTCTCTCTAAGACGCAACAGTAGGG < 41bp 0.777322582692785 0.569199090364939 0.9472445 0.90342116 prediction 0.416246984655693 Functional Loss - SCN2A ENSG00000136531 CDS Human protein_coding chr2:166179697 chr2:166179700 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_91482 0 0 0 0 1 SCN2A chr2:166179666 3'AG 166179666 Downstream 35bp
chr8 105361565 105361565 1 + A T HNSC 105361561 + 105361541 105361581 41 TTGATGAAAGGGAGAGACATCAACAGAGGCCCTGTGTGCTC TTGATGAAAGGGAGAGACATCAACTGAGGCCCTGTGTGCTC < 41bp 0.906052791295343 0.697930797383469 0.12882546 0.18632269 prediction 0.416243987823749 Functional Loss - DCSTAMP ENSG00000164935 CDS Human protein_coding chr8:105361561 chr8:105361565 nonsynonymous SNV 0.896 1 25 hm5C_associated_SNPs_91483 0 0 0 0 1 DCSTAMP chr8:105361607 5'GT 105361607 Upstream 43bp
chr15 45713259 45713259 1 + C T UCEC 45713256 + 45713236 45713276 41 AATAGGCTGCTTTGCTGGCTCTGCAAGAAAATGGACTAGAC AATAGGCTGCTTTGCTGGCTCTGTAAGAAAATGGACTAGAC < 41bp 0.763120195534648 0.55500204136923 0.85249054 0.32006148 prediction 0.416236308330837 Functional Loss - SPATA5L1 ENSG00000171763 CDS Human protein_coding chr15:45713256 chr15:45713259 stopgain 0.995 0 24 hm5C_associated_SNPs_91485 0 0 1 1 1 SPATA5L1 chr15:45713241 3'AG 45713241 Downstream 19bp
chrX 48678522 48678522 1 + G T UCEC 48678520 + 48678500 48678540 41 CTCCCTGCCTCAGTTTAACCCAGAACTGGTGCTGGTCTCAG CTCCCTGCCTCAGTTTAACCCATAACTGGTGCTGGTCTCAG < 41bp 0.708113204880778 0.360888333362049 0.28978223 0.13271579 prediction 0.416226409761555 Functional Loss - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48678520 chrX:48678522 stopgain 0.999 0 23 hm5C_associated_SNPs_91487 0 0 1 0 1 HDAC6 chrX:48678513 3'AG 48678513 Downstream 10bp
chr17 73812946 73812946 1 + T C UCEC 73812945 + 73812925 73812965 41 ATGCCATCTGCCGCCGGAGACTCGGTGCCTGTGAGCCCCTC ATGCCATCTGCCGCCGGAGACCCGGTGCCTGTGAGCCCCTC < 41bp 0.847100702264402 0.638987654791943 0.35617712 0.33972603 prediction 0.416226094944918 Functional Loss - UNK ENSG00000132478 CDS Human protein_coding chr17:73812945 chr17:73812946 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_91488 0 0 1 0 2 UNK chr17:73812851 3'AG 73812851 Downstream 96bp
chr17 73812946 73812946 1 + T C UCEC 73812945 + 73812925 73812965 41 ATGCCATCTGCCGCCGGAGACTCGGTGCCTGTGAGCCCCTC ATGCCATCTGCCGCCGGAGACCCGGTGCCTGTGAGCCCCTC < 41bp 0.847100702264402 0.638987654791943 0.35617712 0.33972603 prediction 0.416226094944918 Functional Loss - UNK ENSG00000132478 CDS Human protein_coding chr17:73812945 chr17:73812946 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_91488 0 0 1 0 2 UNK chr17:73812993 5'GT 73812993 Upstream 48bp
chr19 1394833 1394833 1 - C T rs563204756 1394836 - 1394816 1394856 41 TTGAGCAAGAGGACGAAGCCCAGGGCCCAACGGGGACAGCA TTGAGCAAGAGGACGAAGCCCAGAGCCCAACGGGGACAGCA < 41bp 0.708106628704725 0.478940211675048 0.7688945 0.2672075 prediction 0.416213257409449 Functional Loss - NDUFS7 ENSG00000248015 ncRNA_exonic Human antisense chr19:1394836 chr19:1394833 . . 0 24 hm5C_associated_SNPs_91495 0 0 1 0 1 NDUFS7 chr19:1394803 5'GT 1394803 Upstream 31bp
chr2 219114119 219114119 1 + C T SKCM 219114117 + 219114097 219114137 41 TCGTCACACCAATGCCAGTGCTCGAGACAACACCATCAACC TCGTCACACCAATGCCAGTGCTTGAGACAACACCATCAACC < 41bp 0.875442517704262 0.667339283311968 0.100771874 0.06178978 prediction 0.416206468784587 Functional Loss - ARPC2 ENSG00000163466 CDS Human protein_coding chr2:219114117 chr2:219114119 stopgain 0.966 1 23 hm5C_associated_SNPs_91498 0 0 1 0 2 ARPC2 chr2:219114087 3'AG 219114087 Downstream 33bp
chr2 219114119 219114119 1 + C T SKCM 219114117 + 219114097 219114137 41 TCGTCACACCAATGCCAGTGCTCGAGACAACACCATCAACC TCGTCACACCAATGCCAGTGCTTGAGACAACACCATCAACC < 41bp 0.875442517704262 0.667339283311968 0.100771874 0.06178978 prediction 0.416206468784587 Functional Loss - ARPC2 ENSG00000163466 CDS Human protein_coding chr2:219114117 chr2:219114119 stopgain 0.966 1 23 hm5C_associated_SNPs_91498 0 0 1 0 2 ARPC2 chr2:219114187 5'GT 219114187 Upstream 69bp
chr1 202245498 202245498 1 + C T GBM 202245495 + 202245475 202245515 41 GCTTTGAGGGGCTGTCCTCCCTCCGCCACCTCTGGCTGGAC GCTTTGAGGGGCTGTCCTCCCTCTGCCACCTCTGGCTGGAC < 41bp 0.756351469042834 0.548250763714212 0.4052925 0.2657886 prediction 0.416201410657245 Functional Loss - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202245495 chr1:202245498 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91500 0 0 0 0 1 LGR6 chr1:202245434 3'AG 202245434 Downstream 65bp
chr4 5798894 5798894 1 + C T READ 5798891 + 5798871 5798911 41 TCCTGCAGGAGCTGCGGGAACAGCGTGCACTGGAGCAGGGG TCCTGCAGGAGCTGCGGGAACAGTGTGCACTGGAGCAGGGG < 41bp 0.714660356236549 0.506560412137929 0.49595073 0.39499366 prediction 0.416199888197239 Functional Loss - EVC ENSG00000072840 CDS Human protein_coding chr4:5798891 chr4:5798894 nonsynonymous SNV 0.016 0 24 hm5C_associated_SNPs_91503 0 0 0 0 1 EVC chr4:5798959 5'GT 5798959 Upstream 66bp
chr4 166996085 166996085 1 + G A rs115884871 166996082 + 166996062 166996102 41 TGTCAGCACGAATGTGTCAACACGATGGGGAGCTACATGTG TGTCAGCACGAATGTGTCAACACAATGGGGAGCTACATGTG < 41bp 0.782718830388054 0.5746202846292 0.30607843 0.18505281 prediction 0.416197091517708 Functional Loss - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166996082 chr4:166996085 synonymous SNV . 0 24 hm5C_associated_SNPs_91506 0 0 1 0 2 TLL1 chr4:166996030 3'AG 166996030 Downstream 56bp
chr4 166996085 166996085 1 + G A rs115884871 166996082 + 166996062 166996102 41 TGTCAGCACGAATGTGTCAACACGATGGGGAGCTACATGTG TGTCAGCACGAATGTGTCAACACAATGGGGAGCTACATGTG < 41bp 0.782718830388054 0.5746202846292 0.30607843 0.18505281 prediction 0.416197091517708 Functional Loss - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166996082 chr4:166996085 synonymous SNV . 0 24 hm5C_associated_SNPs_91506 0 0 1 0 2 TLL1 chr4:166996155 5'GT 166996155 Upstream 71bp
chr3 1425009 1425009 1 + C T UCEC 1425006 + 1424986 1425026 41 TGGCCCCAAGGGGAACTTCTCTCCAGAGTTTTTCTGCTTCT TGGCCCCAAGGGGAACTTCTCTCTAGAGTTTTTCTGCTTCT < 41bp 0.778084134051934 0.569987510007564 0.9297215 0.8480805 prediction 0.41619324808874 Functional Loss - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1425006 chr3:1425009 stopgain 0.984 0 24 hm5C_associated_SNPs_91510 0 0 0 0 2 CNTN6 chr3:1424977 3'AG 1424977 Downstream 33bp
chr3 1425009 1425009 1 + C T UCEC 1425006 + 1424986 1425026 41 TGGCCCCAAGGGGAACTTCTCTCCAGAGTTTTTCTGCTTCT TGGCCCCAAGGGGAACTTCTCTCTAGAGTTTTTCTGCTTCT < 41bp 0.778084134051934 0.569987510007564 0.9297215 0.8480805 prediction 0.41619324808874 Functional Loss - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1425006 chr3:1425009 stopgain 0.984 0 24 hm5C_associated_SNPs_91510 0 0 0 0 2 CNTN6 chr3:1425092 5'GT 1425092 Upstream 84bp
chr20 31827693 31827693 1 + C T READ 31827691 + 31827671 31827711 41 GTCTCTATGTCACCATCCCTCTCGGCATAAAGCTCCAAGTG GTCTCTATGTCACCATCCCTCTTGGCATAAAGCTCCAAGTG < 41bp 0.859845853837706 0.651749581903657 0.06501636 0.11238727 prediction 0.416192543868097 Functional Loss - BPIFA1 ENSG00000198183 CDS Human protein_coding chr20:31827691 chr20:31827693 synonymous SNV . 0 23 hm5C_associated_SNPs_91511 0 0 0 0 2 BPIFA1 chr20:31827609 3'AG 31827609 Downstream 85bp
chr20 31827693 31827693 1 + C T READ 31827691 + 31827671 31827711 41 GTCTCTATGTCACCATCCCTCTCGGCATAAAGCTCCAAGTG GTCTCTATGTCACCATCCCTCTTGGCATAAAGCTCCAAGTG < 41bp 0.859845853837706 0.651749581903657 0.06501636 0.11238727 prediction 0.416192543868097 Functional Loss - BPIFA1 ENSG00000198183 CDS Human protein_coding chr20:31827691 chr20:31827693 synonymous SNV . 0 23 hm5C_associated_SNPs_91511 0 0 0 0 2 BPIFA1 chr20:31827716 5'GT 31827716 Upstream 24bp
chr3 128077137 128077137 1 + G A SKCM 128077134 + 128077114 128077154 41 ATCCAGCTCTTCGTGGGGCTCAAGGTGCACTTGTCCACTGG ATCCAGCTCTTCGTGGGGCTCAAAGTGCACTTGTCCACTGG < 41bp 0.793515639016278 0.585420471298658 0.46194056 0.075014174 prediction 0.416190335435241 Functional Loss - EEFSEC ENSG00000132394 CDS Human protein_coding chr3:128077134 chr3:128077137 synonymous SNV . 0 24 hm5C_associated_SNPs_91512 0 0 1 0 2 EEFSEC chr3:128077060 3'AG 128077060 Downstream 78bp
chr3 128077137 128077137 1 + G A SKCM 128077134 + 128077114 128077154 41 ATCCAGCTCTTCGTGGGGCTCAAGGTGCACTTGTCCACTGG ATCCAGCTCTTCGTGGGGCTCAAAGTGCACTTGTCCACTGG < 41bp 0.793515639016278 0.585420471298658 0.46194056 0.075014174 prediction 0.416190335435241 Functional Loss - EEFSEC ENSG00000132394 CDS Human protein_coding chr3:128077134 chr3:128077137 synonymous SNV . 0 24 hm5C_associated_SNPs_91512 0 0 1 0 2 EEFSEC chr3:128077216 5'GT 128077216 Upstream 80bp
chr1 154296214 154296214 1 + C T BLCA 154296212 + 154296192 154296232 41 GTGCCAACTGCGGGATTCCACTCAACCCTGCCCGGGACCTG GTGCCAACTGCGGGATTCCACTTAACCCTGCCCGGGACCTG < 41bp 0.86899046205376 0.660896991154272 0.10919118 0.10900447 prediction 0.416186941798977 Functional Loss - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154296212 chr1:154296214 synonymous SNV . 0 23 hm5C_associated_SNPs_91514 0 0 1 0 1 AQP10 chr1:154296282 5'GT 154296282 Upstream 69bp
chr22 31654293 31654293 1 + G A rs35923988 31654290 + 31654270 31654310 41 CTTTCAGGTGTTCAGAATGCCAGGATTCCCTCACCAACTGG CTTTCAGGTGTTCAGAATGCCAGAATTCCCTCACCAACTGG < 41bp 0.811212777944439 0.603121076073665 0.810801 0.43691096 prediction 0.416183403741546 Functional Loss - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31654290 chr22:31654293 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_91517 0 0 1 0 2 LIMK2 chr22:31654277 3'AG 31654277 Downstream 17bp
chr22 31654293 31654293 1 + G A rs35923988 31654290 + 31654270 31654310 41 CTTTCAGGTGTTCAGAATGCCAGGATTCCCTCACCAACTGG CTTTCAGGTGTTCAGAATGCCAGAATTCCCTCACCAACTGG < 41bp 0.811212777944439 0.603121076073665 0.810801 0.43691096 prediction 0.416183403741546 Functional Loss - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31654290 chr22:31654293 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_91517 0 0 1 0 2 LIMK2 chr22:31654285 3'AG 31654285 Downstream 9bp
chr3 40457483 40457483 1 + C T LGG 40457480 + 40457460 40457500 41 ATGCAGGTGTCCCTGTATGGCTACGTATACACGCTCTACAC ATGCAGGTGTCCCTGTATGGCTATGTATACACGCTCTACAC < 41bp 0.728477470205975 0.520386096497391 0.035959125 0.024349421 prediction 0.416182747417167 Functional Loss - ENTPD3 ENSG00000168032 CDS Human protein_coding chr3:40457480 chr3:40457483 synonymous SNV . 0 24 hm5C_associated_SNPs_91518 0 0 0 0 1 ENTPD3 chr3:40457564 5'GT 40457564 Upstream 82bp
chr20 44333151 44333151 1 + G A SKCM 44333148 + 44333128 44333168 41 GTACTCACCTGTGTACAATGCAGGAAGATTGCGAGAAAGGA GTACTCACCTGTGTACAATGCAGAAAGATTGCGAGAAAGGA < 41bp 0.803994197161919 0.595902927164513 0.3251775 0.1993115 prediction 0.416182539994812 Functional Loss - WFDC10B;WFDC13 ENSG00000168634;ENSG00000182931 CDS Human protein_coding chr20:44333148 chr20:44333151 nonsynonymous SNV 0.110 0 24 hm5C_associated_SNPs_91519 0 0 0 0 1 WFDC13 chr20:44333233 5'GT 44333233 Upstream 83bp
chr3 142499733 142499733 1 + A C PRAD 142499732 + 142499712 142499752 41 GTTTGCTAAGGATTTACTTGCACAAGCCCGGAATTCTCGTG GTTTGCTAAGGATTTACTTGCCCAAGCCCGGAATTCTCGTG < 41bp 0.708090802034568 0.449265367145402 0.124465466 0.05513531 prediction 0.416181604069136 Functional Loss - TRPC1 ENSG00000144935 CDS Human protein_coding chr3:142499732 chr3:142499733 synonymous SNV . 0 22 hm5C_associated_SNPs_91521 0 0 1 0 1 TRPC1 chr3:142499676 3'AG 142499676 Downstream 58bp
chrX 153543572 153543572 1 + C T UCEC 153543570 + 153543550 153543590 41 GCTCTGGCTAAGCTGGGCTACGCGAACAACAGAGTCGTTGT GCTCTGGCTAAGCTGGGCTACGTGAACAACAGAGTCGTTGT < 41bp 0.869352805242163 0.661264723288648 0.26231754 0.21625152 prediction 0.416176163907029 Functional Loss - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153543570 chrX:153543572 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_91522 0 0 0 0 1 TKTL1 chrX:153543523 3'AG 153543523 Downstream 50bp
chr1 203743065 203743065 1 + G A rs61753402 203743062 + 203743042 203743082 41 CACATCCATGCCACAGAGTACGCGGTGGGTATCTATGACAA CACATCCATGCCACAGAGTACGCAGTGGGTATCTATGACAA < 41bp 0.809631922534432 0.601546618578163 0.39579046 0.09759 prediction 0.416170607912538 Functional Loss - LAX1 ENSG00000122188 CDS Human protein_coding chr1:203743062 chr1:203743065 synonymous SNV . 0 24 hm5C_associated_SNPs_91523 0 0 0 0 1 LAX1 chr1:203743003 3'AG 203743003 Downstream 63bp
chr5 139741710 139741710 1 + C T STAD 139741707 + 139741687 139741727 41 CACTGGGAGCCTTTGTTCGACTGCGGAACCCTGTGGTACTG CACTGGGAGCCTTTGTTCGACTGTGGAACCCTGTGGTACTG < 41bp 0.747618082487058 0.539533282242731 0.3366263 0.06499317 prediction 0.416169600488654 Functional Loss - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139741707 chr5:139741710 nonsynonymous SNV 0.981 3 24 hm5C_associated_SNPs_91524 0 0 0 0 1 SLC4A9 chr5:139741759 5'GT 139741759 Upstream 50bp
chr5 74655871 74655871 1 + G A UCEC 74655868 + 74655848 74655888 41 GGAAAATGCCCGGCAGCTTGCCCGAATTGTGTGTGGGACCG GGAAAATGCCCGGCAGCTTGCCCAAATTGTGTGTGGGACCG < 41bp 0.795721677654472 0.587638251115254 0.0247432 0.021028697 prediction 0.416166853078437 Functional Loss - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74655868 chr5:74655871 nonsynonymous SNV 0.958 1 24 hm5C_associated_SNPs_91525 0 0 1 0 2 HMGCR chr5:74655810 3'AG 74655810 Downstream 62bp
chr5 74655871 74655871 1 + G A UCEC 74655868 + 74655848 74655888 41 GGAAAATGCCCGGCAGCTTGCCCGAATTGTGTGTGGGACCG GGAAAATGCCCGGCAGCTTGCCCAAATTGTGTGTGGGACCG < 41bp 0.795721677654472 0.587638251115254 0.0247432 0.021028697 prediction 0.416166853078437 Functional Loss - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74655868 chr5:74655871 nonsynonymous SNV 0.958 1 24 hm5C_associated_SNPs_91525 0 0 1 0 2 HMGCR chr5:74655964 5'GT 74655964 Upstream 94bp
chr13 113975904 113975904 1 + C T PAAD 113975901 + 113975881 113975921 41 TTAAAGCTGCCAACGGCTCCCTGCGAGCGCTGCAGGCCACA TTAAAGCTGCCAACGGCTCCCTGTGAGCGCTGCAGGCCACA < 41bp 0.746437690195442 0.538354530385892 0.051281244 0.019119173 prediction 0.4161663196191 Functional Loss - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113975901 chr13:113975904 stopgain 0.004 0 24 hm5C_associated_SNPs_91526 0 0 1 0 1 LAMP1 chr13:113975872 3'AG 113975872 Downstream 33bp
chr19 41744411 41744411 1 + G A GBM 41744408 + 41744388 41744428 41 CCCTGAGAACATTAGTGCTACGCGGAATGGGAGCCAGGCCT CCCTGAGAACATTAGTGCTACGCAGAATGGGAGCCAGGCCT < 41bp 0.708082424184942 0.45352098106249 0.18275157 0.028539449 prediction 0.416164848369883 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41744408 chr19:41744411 nonsynonymous SNV 0.994 0 24 hm5C_associated_SNPs_91527 0 0 0 0 1 AXL chr19:41744375 3'AG 41744375 Downstream 37bp
chr5 10254913 10254913 1 + G T LGG 10254911 + 10254891 10254931 41 TGGTGGAACTGTCCAAGTCTCAGGATGATGAAATTGGAGAT TGGTGGAACTGTCCAAGTCTCATGATGATGAAATTGGAGAT < 41bp 0.900287718862119 0.692206880361301 0.87994266 0.33682966 prediction 0.416161677001635 Functional Loss - CCT5 ENSG00000150753 CDS Human protein_coding chr5:10254911 chr5:10254913 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_91529 0 0 1 0 1 CCT5 chr5:10254950 5'GT 10254950 Upstream 38bp
chr11 67075683 67075683 1 + C T SKCM 67075681 + 67075661 67075701 41 AGCTGCGCCTGGGGCTCCCCCTCCAGCAGTACCGTGACTTC AGCTGCGCCTGGGGCTCCCCCTTCAGCAGTACCGTGACTTC < 41bp 0.877685667654766 0.66960700797235 0.94088936 0.06950745 prediction 0.416157319364833 Functional Loss - SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075681 chr11:67075683 synonymous SNV . 0 23 hm5C_associated_SNPs_91531 0 0 1 0 2 SSH3 chr11:67075645 3'AG 67075645 Downstream 39bp
chr11 67075683 67075683 1 + C T SKCM 67075681 + 67075661 67075701 41 AGCTGCGCCTGGGGCTCCCCCTCCAGCAGTACCGTGACTTC AGCTGCGCCTGGGGCTCCCCCTTCAGCAGTACCGTGACTTC < 41bp 0.877685667654766 0.66960700797235 0.94088936 0.06950745 prediction 0.416157319364833 Functional Loss - SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075681 chr11:67075683 synonymous SNV . 0 23 hm5C_associated_SNPs_91531 0 0 1 0 2 SSH3 chr11:67075773 5'GT 67075773 Upstream 91bp
chr22 42191507 42191507 1 + G A rs147958692 42191504 + 42191484 42191524 41 TTGGCTGACCTGTCTACCCTCTCGAACACCACACTCCAGGC TTGGCTGACCTGTCTACCCTCTCAAACACCACACTCCAGGC < 41bp 0.807307994134059 0.599230414024898 0.9398707 0.9090457 prediction 0.416155160218321 Functional Loss - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42191504 chr22:42191507 synonymous SNV . 0 24 hm5C_associated_SNPs_91532 0 0 0 1 2 MEI1 chr22:42191415 3'AG 42191415 Downstream 93bp
chr22 42191507 42191507 1 + G A rs147958692 42191504 + 42191484 42191524 41 TTGGCTGACCTGTCTACCCTCTCGAACACCACACTCCAGGC TTGGCTGACCTGTCTACCCTCTCAAACACCACACTCCAGGC < 41bp 0.807307994134059 0.599230414024898 0.9398707 0.9090457 prediction 0.416155160218321 Functional Loss - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42191504 chr22:42191507 synonymous SNV . 0 24 hm5C_associated_SNPs_91532 0 0 0 1 2 MEI1 chr22:42191546 5'GT 42191546 Upstream 40bp
chr13 25272964 25272964 1 + G T LUAD 25272961 + 25272941 25272981 41 TCCACACAGCCTACATGGAGCTGGGCGGGTTGGGCGAGCGT TCCACACAGCCTACATGGAGCTGTGCGGGTTGGGCGAGCGT < 41bp 0.70807657302826 0.298077729627039 0.28517187 0.10002661 prediction 0.41615314605652 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25272961 chr13:25272964 nonsynonymous SNV 0.461 4 24 hm5C_associated_SNPs_91534 0 0 0 0 1 ATP12A chr13:25272988 5'GT 25272988 Upstream 25bp
chr21 45786738 45786738 1 + G A SKCM 45786735 + 45786715 45786755 41 AATCTCTTGATCTCGGTGACCGGGGGGGCCAAGAACTTCAA AATCTCTTGATCTCGGTGACCGGAGGGGCCAAGAACTTCAA < 41bp 0.791464713858447 0.583393557709961 0.9370536 0.91700935 prediction 0.416142312296973 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45786735 chr21:45786738 synonymous SNV . 0 24 hm5C_associated_SNPs_91538 0 0 0 0 1 TRPM2 chr21:45786817 5'GT 45786817 Upstream 80bp
chr17 9503425 9503425 1 + T C COAD 9503424 + 9503404 9503444 41 TTTCTACCTTGGCACCACGACTGGAGATATTCTAAAAATGA TTTCTACCTTGGCACCACGACCGGAGATATTCTAAAAATGA < 41bp 0.708070358964503 0.448736983800875 0.06850237 0.14273766 prediction 0.416140717929006 Functional Loss - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9503424 chr17:9503425 synonymous SNV . 0 22 hm5C_associated_SNPs_91539 0 0 0 0 2 CFAP52 chr17:9503384 3'AG 9503384 Downstream 42bp
chr17 9503425 9503425 1 + T C COAD 9503424 + 9503404 9503444 41 TTTCTACCTTGGCACCACGACTGGAGATATTCTAAAAATGA TTTCTACCTTGGCACCACGACCGGAGATATTCTAAAAATGA < 41bp 0.708070358964503 0.448736983800875 0.06850237 0.14273766 prediction 0.416140717929006 Functional Loss - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9503424 chr17:9503425 synonymous SNV . 0 22 hm5C_associated_SNPs_91539 0 0 0 0 2 CFAP52 chr17:9503500 5'GT 9503500 Upstream 76bp
chr20 61869965 61869965 1 + C T SKCM 61869962 + 61869942 61869982 41 GACGCAGCCCCTGTGGCCCCCTCCGGTGAGAGCTGACACCA GACGCAGCCCCTGTGGCCCCCTCTGGTGAGAGCTGACACCA < 41bp 0.716188703734599 0.508120866797938 0.4998502 0.27815515 prediction 0.416135673873323 Functional Loss - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61869962 chr20:61869965 synonymous SNV . 0 24 hm5C_associated_SNPs_91541 0 0 0 0 2 BIRC7 chr20:61869921 3'AG 61869921 Downstream 45bp
chr20 61869965 61869965 1 + C T SKCM 61869962 + 61869942 61869982 41 GACGCAGCCCCTGTGGCCCCCTCCGGTGAGAGCTGACACCA GACGCAGCCCCTGTGGCCCCCTCTGGTGAGAGCTGACACCA < 41bp 0.716188703734599 0.508120866797938 0.4998502 0.27815515 prediction 0.416135673873323 Functional Loss - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61869962 chr20:61869965 synonymous SNV . 0 24 hm5C_associated_SNPs_91541 0 0 0 0 2 BIRC7 chr20:61869966 5'GT 61869966 Upstream 2bp
chr19 39395730 39395730 1 + G T UCEC 39395726 + 39395706 39395746 41 TCTAGGCTTCTCGGCCGGCACTGAGTACATGGACCTGCAGA TCTAGGCTTCTCGGCCGGCACTGATTACATGGACCTGCAGA < 41bp 0.708065653320246 0.499983325130877 0.18259415 0.15473783 prediction 0.416131306640492 Functional Loss - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39395726 chr19:39395730 nonsynonymous SNV 0.842 1 25 hm5C_associated_SNPs_91542 0 0 1 0 3 NFKBIB chr19:39395655 3'AG 39395655 Downstream 76bp
chr19 39395730 39395730 1 + G T UCEC 39395726 + 39395706 39395746 41 TCTAGGCTTCTCGGCCGGCACTGAGTACATGGACCTGCAGA TCTAGGCTTCTCGGCCGGCACTGATTACATGGACCTGCAGA < 41bp 0.708065653320246 0.499983325130877 0.18259415 0.15473783 prediction 0.416131306640492 Functional Loss - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39395726 chr19:39395730 nonsynonymous SNV 0.842 1 25 hm5C_associated_SNPs_91542 0 0 1 0 3 NFKBIB chr19:39395711 3'AG 39395711 Downstream 20bp
chr19 39395730 39395730 1 + G T UCEC 39395726 + 39395706 39395746 41 TCTAGGCTTCTCGGCCGGCACTGAGTACATGGACCTGCAGA TCTAGGCTTCTCGGCCGGCACTGATTACATGGACCTGCAGA < 41bp 0.708065653320246 0.499983325130877 0.18259415 0.15473783 prediction 0.416131306640492 Functional Loss - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39395726 chr19:39395730 nonsynonymous SNV 0.842 1 25 hm5C_associated_SNPs_91542 0 0 1 0 3 NFKBIB chr19:39395760 5'GT 39395760 Upstream 31bp
chr20 2381064 2381064 1 + G T LIHC 2381062 + 2381042 2381082 41 TGGACTCCTTCGGGCGGACCCTGGAGGACCTGACAGAAGAC TGGACTCCTTCGGGCGGACCCTTGAGGACCTGACAGAAGAC < 41bp 0.908896479910276 0.700831389229273 0.89100873 0.41246825 prediction 0.416130181362006 Functional Loss - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2381062 chr20:2381064 synonymous SNV . 0 23 hm5C_associated_SNPs_91543 0 0 0 0 1 TGM6 chr20:2381090 5'GT 2381090 Upstream 27bp
chr19 17986870 17986870 1 + A T HNSC 17986868 + 17986848 17986888 41 ATGCTTGTGGGCGGGCCCCGCCAGGTGCTCACGCTGGCCCA ATGCTTGTGGGCGGGCCCCGCCTGGTGCTCACGCTGGCCCA < 41bp 0.719873898920498 0.511813723596285 0.907421 0.29051262 prediction 0.416120350648425 Functional Loss - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17986868 chr19:17986870 nonsynonymous SNV 0.004 1 23 hm5C_associated_SNPs_91546 0 0 0 0 1 SLC5A5 chr19:17986915 5'GT 17986915 Upstream 46bp
chr1 210012467 210012467 1 + A C rs143030946 210012466 + 210012446 210012486 41 GGCAATATTGATGACCACTTCAGGATTGGTAATTCTTCCTT GGCAATATTGATGACCACTTCCGGATTGGTAATTCTTCCTT < 41bp 0.836005493848004 0.627949141092594 0.61122954 0.3887578 prediction 0.41611270551082 Functional Loss - DIEXF ENSG00000117597 CDS Human protein_coding chr1:210012466 chr1:210012467 synonymous SNV . 0 22 hm5C_associated_SNPs_91549 0 0 1 0 1 DIEXF chr1:210012473 5'GT 210012473 Upstream 7bp
chr17 16701629 16701629 1 + G A rs11654031 16701626 + 16701606 16701646 41 ACAGAAAATTGTCAAATTTCCTCGGGAAAGTTTTGACCTGA ACAGAAAATTGTCAAATTTCCTCAGGAAAGTTTTGACCTGA < 41bp 0.708053132676771 0.487985693068527 0.30219322 0.09609163 prediction 0.416106265353542 Functional Loss - USP32P1 ENSG00000188933;ENSG00000272815 ncRNA_exonic Human other chr17:16701626 chr17:16701629 . . 0 24 hm5C_associated_SNPs_91551 0 0 0 0 1 USP32P1 chr17:16701556 3'AG 16701556 Downstream 74bp
chr1 29069012 29069012 1 + C T STAD 29069009 + 29068989 29069029 41 TTTGGGTGAAGCTGCTTGGTCTACGGGGGGTGACACAGCCA TTTGGGTGAAGCTGCTTGGTCTATGGGGGGTGACACAGCCA < 41bp 0.746914232299116 0.538861759671469 0.48654443 0.26416057 prediction 0.416104945255295 Functional Loss - YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29069009 chr1:29069012 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_91554 0 0 1 0 1 YTHDF2 chr1:29068915 3'AG 29068915 Downstream 98bp
chr19 16222762 16222762 1 + G A SARC 16222759 + 16222739 16222779 41 AAGCTGCTGCTGATCGGGGACTCGGGGGTGGGGAAGACCTG AAGCTGCTGCTGATCGGGGACTCAGGGGTGGGGAAGACCTG < 41bp 0.708051974034118 0.473238648641462 0.5489307 0.4385904 prediction 0.416103948068236 Functional Loss - RAB8A ENSG00000167461 CDS Human protein_coding chr19:16222759 chr19:16222762 synonymous SNV . 0 24 hm5C_associated_SNPs_91555 0 0 1 0 1 RAB8A chr19:16222835 5'GT 16222835 Upstream 74bp
chr16 66586678 66586678 1 + C T CESC 66586676 + 66586656 66586696 41 TCTGCTTCAGTGTGAAAGGCCACGTGAAGATGCTGCGGCTG TCTGCTTCAGTGTGAAAGGCCATGTGAAGATGCTGCGGCTG < 41bp 0.801929708225091 0.593879113012296 0.18349278 0.19195297 prediction 0.41610119042559 Functional Loss - CKLF;CKLF-CMTM1 ENSG00000217555;ENSG00000254788 CDS Human other chr16:66586676 chr16:66586678 synonymous SNV . 0 23 hm5C_associated_SNPs_91556 0 0 1 0 1 CKLF;CKLF-CMTM1 chr16:66586696 5'GT 66586696 Upstream 19bp
chr16 30081257 30081257 1 + C T UCEC 30081254 + 30081234 30081274 41 CCCTGGGCCCTGACCTTCTCCTACGGCCGAGCCCTGCAGGC CCCTGGGCCCTGACCTTCTCCTATGGCCGAGCCCTGCAGGC < 41bp 0.73844916166648 0.530398607874023 0.07153946 0.090884745 prediction 0.416101107584913 Functional Loss - ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081254 chr16:30081257 synonymous SNV . 0 24 hm5C_associated_SNPs_91557 1 0 1 0 1 ALDOA chr16:30081350 5'GT 30081350 Upstream 94bp
chr15 45444549 45444549 1 + C T GBM 45444547 + 45444527 45444567 41 CCGCGTGGGAATCATCCTGTCGCGGGGCACAGCAGCCAGCA CCGCGTGGGAATCATCCTGTCGTGGGGCACAGCAGCCAGCA < 41bp 0.858070533196792 0.650022320172077 0.49310812 0.39282477 prediction 0.41609642604943 Functional Loss - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45444547 chr15:45444549 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_91559 0 0 0 0 1 DUOX1 chr15:45444484 3'AG 45444484 Downstream 66bp
chr2 231947609 231947609 1 + G A HNSC 231947606 + 231947586 231947626 41 TTTTTCCTTAGATCGTTAGACACGGTGGCAGTCTGGGCCTT TTTTTCCTTAGATCGTTAGACACAGTGGCAGTCTGGGCCTT < 41bp 0.792783186878662 0.584738768578913 0.44783854 0.28235787 prediction 0.416088836599498 Functional Loss - PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231947606 chr2:231947609 nonsynonymous SNV 0.870 4 24 hm5C_associated_SNPs_91560 0 0 1 0 2 PSMD1 chr2:231947597 3'AG 231947597 Downstream 13bp
chr2 231947609 231947609 1 + G A HNSC 231947606 + 231947586 231947626 41 TTTTTCCTTAGATCGTTAGACACGGTGGCAGTCTGGGCCTT TTTTTCCTTAGATCGTTAGACACAGTGGCAGTCTGGGCCTT < 41bp 0.792783186878662 0.584738768578913 0.44783854 0.28235787 prediction 0.416088836599498 Functional Loss - PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231947606 chr2:231947609 nonsynonymous SNV 0.870 4 24 hm5C_associated_SNPs_91560 0 0 1 0 2 PSMD1 chr2:231947708 5'GT 231947708 Upstream 100bp
chr12 64873834 64873834 1 + A C LUSC 64873830 + 64873810 64873850 41 AAAGCCTTCTGGTGCAATATCTGGAGTACAGAAAGCAGAAA AAAGCCTTCTGGTGCAATATCTGGCGTACAGAAAGCAGAAA < 41bp 0.943078775096714 0.735034473418994 0.61057997 0.6640313 prediction 0.416088603355439 Functional Loss - TBK1 ENSG00000183735 CDS Human protein_coding chr12:64873830 chr12:64873834 synonymous SNV . 0 25 hm5C_associated_SNPs_91561 0 0 1 0 2 TBK1 chr12:64873792 3'AG 64873792 Downstream 43bp
chr12 64873834 64873834 1 + A C LUSC 64873830 + 64873810 64873850 41 AAAGCCTTCTGGTGCAATATCTGGAGTACAGAAAGCAGAAA AAAGCCTTCTGGTGCAATATCTGGCGTACAGAAAGCAGAAA < 41bp 0.943078775096714 0.735034473418994 0.61057997 0.6640313 prediction 0.416088603355439 Functional Loss - TBK1 ENSG00000183735 CDS Human protein_coding chr12:64873830 chr12:64873834 synonymous SNV . 0 25 hm5C_associated_SNPs_91561 0 0 1 0 2 TBK1 chr12:64873902 5'GT 64873902 Upstream 69bp
chr22 21377013 21377013 1 + G A BLCA 21377010 + 21376990 21377030 41 GCTGGGTCGACGAGGACTGCCCCGAAGGGGAGGGAGGCACA GCTGGGTCGACGAGGACTGCCCCAAAGGGGAGGGAGGCACA < 41bp 0.708043615116007 0.464130687805012 0.29425752 0.31905347 prediction 0.416087230232013 Functional Loss - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21377010 chr22:21377013 nonsynonymous SNV 0.883 1 24 hm5C_associated_SNPs_91562 0 0 0 0 2 P2RX6 chr22:21376965 3'AG 21376965 Downstream 49bp
chr22 21377013 21377013 1 + G A BLCA 21377010 + 21376990 21377030 41 GCTGGGTCGACGAGGACTGCCCCGAAGGGGAGGGAGGCACA GCTGGGTCGACGAGGACTGCCCCAAAGGGGAGGGAGGCACA < 41bp 0.708043615116007 0.464130687805012 0.29425752 0.31905347 prediction 0.416087230232013 Functional Loss - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21377010 chr22:21377013 nonsynonymous SNV 0.883 1 24 hm5C_associated_SNPs_91562 0 0 0 0 2 P2RX6 chr22:21377040 5'GT 21377040 Upstream 28bp
chr8 27169163 27169163 1 + G A rs185651358 27169160 + 27169140 27169180 41 ATCCCCGGGAACCTCAGGCCCGCGGATGGGAGAAACCAGAG ATCCCCGGGAACCTCAGGCCCGCAGATGGGAGAAACCAGAG < 41bp 0.708035079075002 0.48462584494023 0.6310364 0.5824149 prediction 0.416070158150005 Functional Loss - PTK2B ENSG00000120899 UTR5 Human protein_coding chr8:27169160 chr8:27169163 . . 0 24 hm5C_associated_SNPs_91565 0 0 0 0 1 PTK2B chr8:27169226 5'GT 27169226 Upstream 64bp
chr19 45285734 45285734 1 + G A rs10416628 45285731 + 45285711 45285751 41 CAAGAGCGTCTGCAGGCCTGCAGGGACAAGCCAGGCAGGTA CAAGAGCGTCTGCAGGCCTGCAGAGACAAGCCAGGCAGGTA < 41bp 0.708031977373075 0.460290468058364 0.8792669 0.6378308 prediction 0.416063954746149 Functional Loss - CBLC ENSG00000142273 CDS Human protein_coding chr19:45285731 chr19:45285734 synonymous SNV . 0 24 hm5C_associated_SNPs_91567 0 0 0 0 1 CBLC chr19:45285748 5'GT 45285748 Upstream 15bp
chr16 31424470 31424470 1 + G T UCEC 31424467 + 31424447 31424487 41 TTCAGCCCTGTGGAGGTGGCCAAGGCTGTGTACCGGTGCTG TTCAGCCCTGTGGAGGTGGCCAATGCTGTGTACCGGTGCTG < 41bp 0.708030864892272 0.29652301693884 0.6358096 0.26658142 prediction 0.416061729784543 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31424467 chr16:31424470 nonsynonymous SNV 0.738 1 24 hm5C_associated_SNPs_91569 0 0 0 0 2 ITGAD chr16:31424410 3'AG 31424410 Downstream 61bp
chr16 31424470 31424470 1 + G T UCEC 31424467 + 31424447 31424487 41 TTCAGCCCTGTGGAGGTGGCCAAGGCTGTGTACCGGTGCTG TTCAGCCCTGTGGAGGTGGCCAATGCTGTGTACCGGTGCTG < 41bp 0.708030864892272 0.29652301693884 0.6358096 0.26658142 prediction 0.416061729784543 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31424467 chr16:31424470 nonsynonymous SNV 0.738 1 24 hm5C_associated_SNPs_91569 0 0 0 0 2 ITGAD chr16:31424567 5'GT 31424567 Upstream 98bp
chr19 3746573 3746573 1 + G A rs115816600 3746570 + 3746550 3746590 41 CCATTGTGGTCTTCTTCATCCCCGAGAGCCGGCCGGCCCTC CCATTGTGGTCTTCTTCATCCCCAAGAGCCGGCCGGCCCTC < 41bp 0.828023955426048 0.619997151610465 0.21851003 0.33948356 prediction 0.416053607631166 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3746570 chr19:3746573 nonsynonymous SNV 0.476 3 24 hm5C_associated_SNPs_91571 0 0 0 0 1 TJP3 chr19:3746483 3'AG 3746483 Downstream 91bp
chr5 176815096 176815096 1 + G A BLCA 176815093 + 176815073 176815113 41 TGGCTACCTGCACCACATCACTCGACTTGTGGTGGCCTCCT TGGCTACCTGCACCACATCACTCAACTTGTGGTGGCCTCCT < 41bp 0.815229848061407 0.607203410015714 0.73273003 0.16443866 prediction 0.416052876091385 Functional Loss - SLC34A1 ENSG00000131183 CDS Human protein_coding chr5:176815093 chr5:176815096 nonsynonymous SNV 0.010 0 24 hm5C_associated_SNPs_91572 0 0 0 0 1 SLC34A1 chr5:176815190 5'GT 176815190 Upstream 95bp
chr2 88828629 88828629 1 + C T BLCA 88828626 + 88828606 88828646 41 TTTTACAGGCCCATCCCTAACCCCAACCCCAAGCTAACAGA TTTTACAGGCCCATCCCTAACCCTAACCCCAAGCTAACAGA < 41bp 0.708025453740686 0.488613266944592 0.27637553 0.23042819 prediction 0.416050907481372 Functional Loss - TEX37 ENSG00000172073 CDS Human protein_coding chr2:88828626 chr2:88828629 synonymous SNV . 0 24 hm5C_associated_SNPs_91573 0 0 0 0 1 TEX37 chr2:88828570 3'AG 88828570 Downstream 60bp
chr2 54880898 54880898 1 + A C rs2271328 54880897 + 54880877 54880917 41 CAGGGTGCGGCTGGTGGACACAGGGGACAAGTTCCGCTTCT CAGGGTGCGGCTGGTGGACACCGGGGACAAGTTCCGCTTCT < 41bp 0.820829918780626 0.612816032563203 0.9274665 0.9208698 prediction 0.416027772434847 Functional Loss - SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54880897 chr2:54880898 synonymous SNV . 0 22 hm5C_associated_SNPs_91580 0 0 1 0 1 SPTBN1 chr2:54880990 5'GT 54880990 Upstream 93bp
chr16 88071599 88071599 1 + C T UCEC 88071597 + 88071577 88071617 41 AGGGCAACCTCCAGATCCATCACGTGGGGCAGGACGGTCAG AGGGCAACCTCCAGATCCATCATGTGGGGCAGGACGGTCAG < 41bp 0.708009410136359 0.438934386819034 0.7036127 0.63266855 prediction 0.416018820272718 Functional Loss - BANP ENSG00000172530 CDS Human protein_coding chr16:88071597 chr16:88071599 synonymous SNV . 0 23 hm5C_associated_SNPs_91582 0 0 1 0 2 BANP chr16:88071579 3'AG 88071579 Downstream 21bp
chr16 88071599 88071599 1 + C T UCEC 88071597 + 88071577 88071617 41 AGGGCAACCTCCAGATCCATCACGTGGGGCAGGACGGTCAG AGGGCAACCTCCAGATCCATCATGTGGGGCAGGACGGTCAG < 41bp 0.708009410136359 0.438934386819034 0.7036127 0.63266855 prediction 0.416018820272718 Functional Loss - BANP ENSG00000172530 CDS Human protein_coding chr16:88071597 chr16:88071599 synonymous SNV . 0 23 hm5C_associated_SNPs_91582 0 0 1 0 2 BANP chr16:88071617 5'GT 88071617 Upstream 19bp
chr19 15163076 15163076 1 + G A rs142817732 15163073 + 15163053 15163093 41 CAAAGGAGAAATGAGCAATCCGCGGTCTTTGGAAGAGGTAG CAAAGGAGAAATGAGCAATCCGCAGTCTTTGGAAGAGGTAG < 41bp 0.792014885905573 0.584007607952563 0.85896885 0.40576148 prediction 0.416014555906019 Functional Loss - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15163073 chr19:15163076 nonsynonymous SNV 0.027 0 24 hm5C_associated_SNPs_91585 0 0 0 0 2 CASP14 chr19:15163017 3'AG 15163017 Downstream 60bp
chr19 15163076 15163076 1 + G A rs142817732 15163073 + 15163053 15163093 41 CAAAGGAGAAATGAGCAATCCGCGGTCTTTGGAAGAGGTAG CAAAGGAGAAATGAGCAATCCGCAGTCTTTGGAAGAGGTAG < 41bp 0.792014885905573 0.584007607952563 0.85896885 0.40576148 prediction 0.416014555906019 Functional Loss - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15163073 chr19:15163076 nonsynonymous SNV 0.027 0 24 hm5C_associated_SNPs_91585 0 0 0 0 2 CASP14 chr19:15163089 5'GT 15163089 Upstream 14bp
chr5 224542 224542 1 + G A SARC 224539 + 224519 224559 41 GGTGGTAGGCGCTGGAGGGGCAGGCTTGCGAGCTGCATTTG GGTGGTAGGCGCTGGAGGGGCAGACTTGCGAGCTGCATTTG < 41bp 0.829781791309136 0.621778531100238 0.8962071 0.8590666 prediction 0.416006520417797 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:224539 chr5:224542 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91588 0 0 1 0 2 SDHA chr5:224475 3'AG 224475 Downstream 68bp
chr5 224542 224542 1 + G A SARC 224539 + 224519 224559 41 GGTGGTAGGCGCTGGAGGGGCAGGCTTGCGAGCTGCATTTG GGTGGTAGGCGCTGGAGGGGCAGACTTGCGAGCTGCATTTG < 41bp 0.829781791309136 0.621778531100238 0.8962071 0.8590666 prediction 0.416006520417797 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:224539 chr5:224542 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91588 0 0 1 0 2 SDHA chr5:224636 5'GT 224636 Upstream 95bp
chr6 167709557 167709557 1 + G A BRCA 167709554 + 167709534 167709574 41 CCACCTCCATACTGCTGGGACTCGGGGCCGCCCCGCTGTGG CCACCTCCATACTGCTGGGACTCAGGGCCGCCCCGCTGTGG < 41bp 0.834574471415777 0.62657561904094 0.1777961 0.025329083 prediction 0.415997704749674 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167709554 chr6:167709557 nonsynonymous SNV 0.000 4 24 hm5C_associated_SNPs_91590 0 0 1 0 1 UNC93A chr6:167709520 3'AG 167709520 Downstream 38bp
chr1 165872437 165872437 1 + A T LUAD 165872435 + 165872415 165872455 41 ACAGTATTAAGGGACATCAGCGAGAGAGGCAGGGATCTTGA ACAGTATTAAGGGACATCAGCGTGAGAGGCAGGGATCTTGA < 41bp 0.707996112693655 0.495076085001954 0.89815986 0.8550309 prediction 0.41599222538731 Functional Loss - UCK2 ENSG00000143179 CDS Human protein_coding chr1:165872435 chr1:165872437 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_91592 0 0 1 0 2 UCK2 chr1:165872419 3'AG 165872419 Downstream 19bp
chr1 165872437 165872437 1 + A T LUAD 165872435 + 165872415 165872455 41 ACAGTATTAAGGGACATCAGCGAGAGAGGCAGGGATCTTGA ACAGTATTAAGGGACATCAGCGTGAGAGGCAGGGATCTTGA < 41bp 0.707996112693655 0.495076085001954 0.89815986 0.8550309 prediction 0.41599222538731 Functional Loss - UCK2 ENSG00000143179 CDS Human protein_coding chr1:165872435 chr1:165872437 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_91592 0 0 1 0 2 UCK2 chr1:165872516 5'GT 165872516 Upstream 80bp
chr6 160461701 160461701 1 + C T rs200699942 160461698 + 160461678 160461718 41 AAGGAGAAGGAAGACCTCCTCTGCGGTGCCACCGACGGGAA AAGGAGAAGGAAGACCTCCTCTGTGGTGCCACCGACGGGAA < 41bp 0.739857435882856 0.531861355752022 0.5763572 0.4004799 prediction 0.415992160261668 Functional Loss - IGF2R ENSG00000197081 CDS Human protein_coding chr6:160461698 chr6:160461701 synonymous SNV . 0 24 hm5C_associated_SNPs_91593 0 0 1 0 1 IGF2R chr6:160461756 5'GT 160461756 Upstream 56bp
chr8 55055318 55055318 1 + T C SARC 55055317 + 55055297 55055337 41 AAAAAATGGTGGTGTTGTTACTACAGCCTTCTATGATCCAA AAAAAATGGTGGTGTTGTTACCACAGCCTTCTATGATCCAA < 41bp 0.842916779268923 0.63493315545213 0.4033837 0.2334176 prediction 0.415967247633586 Functional Loss - MRPL15 ENSG00000137547 CDS Human protein_coding chr8:55055317 chr8:55055318 synonymous SNV . 0 22 hm5C_associated_SNPs_91603 0 0 1 0 1 MRPL15 chr8:55055346 5'GT 55055346 Upstream 29bp
chr2 33783344 33783344 1 + G A UCEC 33783341 + 33783321 33783361 41 TCTGGCCTGCAGGAGATTTGCCCGGGCGCCCTCCTTGAGCA TCTGGCCTGCAGGAGATTTGCCCAGGCGCCCTCCTTGAGCA < 41bp 0.815946593521092 0.607964596864577 0.88920856 0.33659565 prediction 0.415963993313031 Functional Loss - RASGRP3 ENSG00000152689 CDS Human protein_coding chr2:33783341 chr2:33783344 nonsynonymous SNV 0.540 0 24 hm5C_associated_SNPs_91604 0 0 0 0 2 RASGRP3 chr2:33783278 3'AG 33783278 Downstream 67bp
chr2 33783344 33783344 1 + G A UCEC 33783341 + 33783321 33783361 41 TCTGGCCTGCAGGAGATTTGCCCGGGCGCCCTCCTTGAGCA TCTGGCCTGCAGGAGATTTGCCCAGGCGCCCTCCTTGAGCA < 41bp 0.815946593521092 0.607964596864577 0.88920856 0.33659565 prediction 0.415963993313031 Functional Loss - RASGRP3 ENSG00000152689 CDS Human protein_coding chr2:33783341 chr2:33783344 nonsynonymous SNV 0.540 0 24 hm5C_associated_SNPs_91604 0 0 0 0 2 RASGRP3 chr2:33783403 5'GT 33783403 Upstream 60bp
chr4 74351650 74351650 1 + C T READ 74351647 + 74351627 74351667 41 AAGCATAATTTCTCACACTGCTGCAGTAAGGTTGATGCTCA AAGCATAATTTCTCACACTGCTGTAGTAAGGTTGATGCTCA < 41bp 0.756150793835383 0.548169282996097 0.10226706 0.05022341 prediction 0.415963021678573 Functional Loss - AFM ENSG00000079557 CDS Human protein_coding chr4:74351647 chr4:74351650 synonymous SNV . 0 24 hm5C_associated_SNPs_91605 0 0 0 0 1 AFM chr4:74351579 3'AG 74351579 Downstream 72bp
chr6 114240546 114240546 1 + T C rs149319405 114240545 + 114240525 114240565 41 TTCTTCAGCTGCAACGGAAACTGCACCCTCCCTCCCGACTT TTCTTCAGCTGCAACGGAAACCGCACCCTCCCTCCCGACTT < 41bp 0.734672887893872 0.526697176070518 0.1582933 0.1313676 prediction 0.415951423646706 Functional Loss - FLJ34503 ENSG00000175967 ncRNA_exonic Human antisense chr6:114240545 chr6:114240546 . . 0 22 hm5C_associated_SNPs_91608 0 0 0 0 1 FLJ34503 chr6:114240621 5'GT 114240621 Upstream 76bp
chr2 96076633 96076633 1 + G A UCEC 96076630 + 96076610 96076650 41 AGGCCACAGATGCTATGGCCCACGTGGCCGGCTTCACTGTG AGGCCACAGATGCTATGGCCCACATGGCCGGCTTCACTGTG < 41bp 0.707970777724429 0.461724503434497 0.18004373 0.046157718 prediction 0.415941555448857 Functional Loss - FAHD2A ENSG00000115042 CDS Human protein_coding chr2:96076630 chr2:96076633 nonsynonymous SNV 0.982 5 24 hm5C_associated_SNPs_91612 0 0 0 0 1 FAHD2A chr2:96076612 3'AG 96076612 Downstream 22bp
chr14 69989070 69989070 1 + G T UCEC 69989066 + 69989046 69989086 41 TCGAGGAGGTGGTGCAGGAGCTGAGAATGGAGCAGGAGCAG TCGAGGAGGTGGTGCAGGAGCTGATAATGGAGCAGGAGCAG < 41bp 0.759072545170835 0.55110506763594 0.77792144 0.7665206 prediction 0.41593495506979 Functional Loss - PLEKHD1 ENSG00000175985 CDS Human protein_coding chr14:69989066 chr14:69989070 nonsynonymous SNV 0.992 1 25 hm5C_associated_SNPs_91614 0 0 0 0 2 PLEKHD1 chr14:69989000 3'AG 69989000 Downstream 71bp
chr14 69989070 69989070 1 + G T UCEC 69989066 + 69989046 69989086 41 TCGAGGAGGTGGTGCAGGAGCTGAGAATGGAGCAGGAGCAG TCGAGGAGGTGGTGCAGGAGCTGATAATGGAGCAGGAGCAG < 41bp 0.759072545170835 0.55110506763594 0.77792144 0.7665206 prediction 0.41593495506979 Functional Loss - PLEKHD1 ENSG00000175985 CDS Human protein_coding chr14:69989066 chr14:69989070 nonsynonymous SNV 0.992 1 25 hm5C_associated_SNPs_91614 0 0 0 0 2 PLEKHD1 chr14:69989094 5'GT 69989094 Upstream 25bp
chr1 40229443 40229443 1 - C T rs140254369 40229446 - 40229426 40229466 41 CAGATGACGTCCACGGCTCCCACGGCCGGCAGGTCTGCCGT CAGATGACGTCCACGGCTCCCACAGCCGGCAGGTCTGCCGT < 41bp 0.818873683851372 0.610907009816899 0.6257836 0.2786345 prediction 0.415933348068946 Functional Loss - BMP8B ENSG00000116985 CDS Human other chr1:40229446 chr1:40229443 nonsynonymous SNV 0.004 1 24 hm5C_associated_SNPs_91615 0 0 0 0 2 BMP8B;PPIE chr1:40229384 5'GT 40229384 Upstream 60bp
chr1 40229443 40229443 1 - C T rs140254369 40229446 - 40229426 40229466 41 CAGATGACGTCCACGGCTCCCACGGCCGGCAGGTCTGCCGT CAGATGACGTCCACGGCTCCCACAGCCGGCAGGTCTGCCGT < 41bp 0.818873683851372 0.610907009816899 0.6257836 0.2786345 prediction 0.415933348068946 Functional Loss - BMP8B ENSG00000116985 CDS Human protein_coding chr1:40229446 chr1:40229443 nonsynonymous SNV 0.004 1 24 hm5C_associated_SNPs_91615 0 0 0 0 2 BMP8B chr1:40229463 3'AG 40229463 Downstream 21bp
chr14 24771476 24771476 1 + G A LUSC 24771473 + 24771453 24771493 41 TCTCCGAGATCAGACGAGTTCCAGACTCCTGGAGCAGGTCC TCTCCGAGATCAGACGAGTTCCAAACTCCTGGAGCAGGTCC < 41bp 0.707966632659399 0.462072521436655 0.33526784 0.26311934 prediction 0.415933265318799 Functional Loss - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24771473 chr14:24771476 nonsynonymous SNV 0.986 3 24 hm5C_associated_SNPs_91616 0 0 1 0 1 NOP9 chr14:24771438 3'AG 24771438 Downstream 39bp
chr13 114193788 114193788 1 + C T UCEC 114193786 + 114193766 114193806 41 CCACCTCCATCGAACCCATCCGCGACTTCCTGGCCATCGTT CCACCTCCATCGAACCCATCCGTGACTTCCTGGCCATCGTT < 41bp 0.864888627481009 0.656923503534033 0.23069331 0.15550682 prediction 0.415930247893951 Functional Loss - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114193786 chr13:114193788 synonymous SNV . 0 23 hm5C_associated_SNPs_91618 0 0 1 0 1 TMCO3 chr13:114193822 5'GT 114193822 Upstream 35bp
chr19 12781554 12781554 1 + G C UCEC 12781550 + 12781530 12781570 41 GCTGTTGGGATTGCCGCTCACGGAGGCCTGAGCCAGTGCAG GCTGTTGGGATTGCCGCTCACGGACGCCTGAGCCAGTGCAG < 41bp 0.88775703250823 0.679795309227449 0.9214476 0.8515935 prediction 0.41592344656156 Functional Loss - WDR83 ENSG00000123154 CDS Human protein_coding chr19:12781550 chr19:12781554 nonsynonymous SNV 0.950 0 25 hm5C_associated_SNPs_91619 0 0 1 1 1 WDR83 chr19:12781509 3'AG 12781509 Downstream 46bp
chr6 7390296 7390296 1 + T C UCEC 7390295 + 7390275 7390315 41 GGGCAATTCGACGACGCGGACTCCTCTGACAGGTAGGCGGC GGGCAATTCGACGACGCGGACCCCTCTGACAGGTAGGCGGC < 41bp 0.707961055411388 0.467298444175585 0.26632872 0.15667701 prediction 0.415922110822776 Functional Loss - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7390295 chr6:7390296 nonsynonymous SNV 0.991 0 22 hm5C_associated_SNPs_91620 0 0 1 0 1 RIOK1 chr6:7390306 5'GT 7390306 Upstream 11bp
chr2 99170757 99170757 1 + C T COAD 99170754 + 99170734 99170774 41 ACACGGCAGCTGGTCACGGTCTGCGACTGCAAGCTCCTGGC ACACGGCAGCTGGTCACGGTCTGTGACTGCAAGCTCCTGGC < 41bp 0.750045461096888 0.542086359671062 0.17836899 0.19865486 prediction 0.415918202851653 Functional Loss - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99170754 chr2:99170757 synonymous SNV . 0 24 hm5C_associated_SNPs_91622 0 0 1 0 1 INPP4A chr2:99170734 3'AG 99170734 Downstream 24bp
chr7 33944686 33944686 1 + G A rs112890951 33944683 + 33944663 33944703 41 CAGCGGGTTCCGGGAGGCGCCCGGTGAGCCCACGTCTGTTG CAGCGGGTTCCGGGAGGCGCCCGATGAGCCCACGTCTGTTG < 41bp 0.723209171789533 0.515252246467825 0.8507892 0.4950192 prediction 0.415913850643415 Functional Loss - BMPER ENSG00000164619 UTR5 Human protein_coding chr7:33944683 chr7:33944686 . . 0 24 hm5C_associated_SNPs_91623 1 0 0 0 1 BMPER chr7:33944756 5'GT 33944756 Upstream 71bp
chr1 227842115 227842115 1 + G T SARC 227842112 + 227842092 227842132 41 ATGCCAAAAAGTGACACTGACAAGACATAGAAGCTGGGGCC ATGCCAAAAAGTGACACTGACAATACATAGAAGCTGGGGCC < 41bp 0.707951443839848 0.350672470597566 0.18534353 0.015846282 prediction 0.415902887679696 Functional Loss - ZNF678 ENSG00000181450 CDS Human protein_coding chr1:227842112 chr1:227842115 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_91626 0 0 1 0 2 ZNF678 chr1:227842037 3'AG 227842037 Downstream 79bp
chr1 227842115 227842115 1 + G T SARC 227842112 + 227842092 227842132 41 ATGCCAAAAAGTGACACTGACAAGACATAGAAGCTGGGGCC ATGCCAAAAAGTGACACTGACAATACATAGAAGCTGGGGCC < 41bp 0.707951443839848 0.350672470597566 0.18534353 0.015846282 prediction 0.415902887679696 Functional Loss - ZNF678 ENSG00000181450 CDS Human protein_coding chr1:227842112 chr1:227842115 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_91626 0 0 1 0 2 ZNF678 chr1:227842177 5'GT 227842177 Upstream 63bp
chr11 77911746 77911746 1 + G A STAD 77911743 + 77911723 77911763 41 GCCTCTCTGGTCAAGGAGGACTCGAACTCGGGGACCAGCTG GCCTCTCTGGTCAAGGAGGACTCAAACTCGGGGACCAGCTG < 41bp 0.80012350999095 0.592172666311738 0.9235722 0.8515955 prediction 0.415901687358424 Functional Loss - USP35 ENSG00000118369 CDS Human protein_coding chr11:77911743 chr11:77911746 synonymous SNV . 0 24 hm5C_associated_SNPs_91627 0 0 1 0 1 USP35 chr11:77911696 3'AG 77911696 Downstream 51bp
chr8 75272429 75272429 1 + A C UCEC 75272425 + 75272405 75272445 41 GCATGTATTACCCACGGGTACAACATTACCGAGAGCTGCTT GCATGTATTACCCACGGGTACAACCTTACCGAGAGCTGCTT < 41bp 0.707949413815037 0.282776848352574 0.12696368 0.043913066 prediction 0.415898827630074 Functional Loss - GDAP1 ENSG00000104381 CDS Human protein_coding chr8:75272425 chr8:75272429 nonsynonymous SNV 0.978 4 25 hm5C_associated_SNPs_91628 0 0 1 0 1 GDAP1 chr8:75272372 3'AG 75272372 Downstream 58bp
chr2 102476285 102476285 1 + G A CESC 102476282 + 102476262 102476302 41 GCAAGCCAAGCTTCCATGCTCCCGAGCCCAAAGCCCACTAC GCAAGCCAAGCTTCCATGCTCCCAAGCCCAAAGCCCACTAC < 41bp 0.707936416636569 0.47641187081786 0.31291616 0.36790025 prediction 0.415872833273138 Functional Loss - MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102476282 chr2:102476285 nonsynonymous SNV 0.595 2 24 hm5C_associated_SNPs_91632 0 0 1 0 1 MAP4K4 chr2:102476326 5'GT 102476326 Upstream 42bp
chr5 71015222 71015222 1 + G A UCEC 71015219 + 71015199 71015239 41 GCCCAGGAGGACGCCGAGCTCCAGCCCCGAGCCCTGGACAT GCCCAGGAGGACGCCGAGCTCCAACCCCGAGCCCTGGACAT < 41bp 0.707935929197253 0.458742040060269 0.8052836 0.7256812 prediction 0.415871858394506 Functional Loss - CARTPT ENSG00000164326 CDS Human protein_coding chr5:71015219 chr5:71015222 synonymous SNV . 0 24 hm5C_associated_SNPs_91633 0 0 0 0 1 CARTPT chr5:71015279 5'GT 71015279 Upstream 58bp
chr8 2033423 2033423 1 + C T rs144162836 2033420 + 2033400 2033440 41 GCCCAGGTTCCAGGGCCTCCCACCGGTGTGCACGCTTCCGA GCCCAGGTTCCAGGGCCTCCCACTGGTGTGCACGCTTCCGA < 41bp 0.726027389771202 0.518094742024904 0.6275048 0.4638714 prediction 0.415865295492597 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2033420 chr8:2033423 synonymous SNV . 0 24 hm5C_associated_SNPs_91635 0 0 0 0 2 MYOM2 chr8:2033395 3'AG 2033395 Downstream 29bp
chr8 2033423 2033423 1 + C T rs144162836 2033420 + 2033400 2033440 41 GCCCAGGTTCCAGGGCCTCCCACCGGTGTGCACGCTTCCGA GCCCAGGTTCCAGGGCCTCCCACTGGTGTGCACGCTTCCGA < 41bp 0.726027389771202 0.518094742024904 0.6275048 0.4638714 prediction 0.415865295492597 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2033420 chr8:2033423 synonymous SNV . 0 24 hm5C_associated_SNPs_91635 0 0 0 0 2 MYOM2 chr8:2033522 5'GT 2033522 Upstream 100bp
chr2 71740392 71740392 1 + G T UCEC 71740389 + 71740369 71740409 41 GGCGGGGGACAGAGCCGGGCCGAGACTTGGTCCCTGCTCAG GGCGGGGGACAGAGCCGGGCCGATACTTGGTCCCTGCTCAG < 41bp 0.70793158239557 0.359548641645143 0.756819 0.34644488 prediction 0.415863164791139 Functional Loss - DYSF ENSG00000135636 CDS Human protein_coding chr2:71740389 chr2:71740392 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_91636 0 0 0 0 2 DYSF chr2:71740370 3'AG 71740370 Downstream 23bp
chr2 71740392 71740392 1 + G T UCEC 71740389 + 71740369 71740409 41 GGCGGGGGACAGAGCCGGGCCGAGACTTGGTCCCTGCTCAG GGCGGGGGACAGAGCCGGGCCGATACTTGGTCCCTGCTCAG < 41bp 0.70793158239557 0.359548641645143 0.756819 0.34644488 prediction 0.415863164791139 Functional Loss - DYSF ENSG00000135636 CDS Human protein_coding chr2:71740389 chr2:71740392 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_91636 0 0 0 0 2 DYSF chr2:71740462 5'GT 71740462 Upstream 71bp
chr11 107992362 107992362 1 + G T SARC 107992360 + 107992340 107992380 41 GTGCTGGCGGCACTTCTGCGCAGCGGCGCCCGCAGCCGCAG GTGCTGGCGGCACTTCTGCGCATCGGCGCCCGCAGCCGCAG < 41bp 0.917348396697084 0.709417170647603 0.3618995 0.11737007 prediction 0.415862452098962 Functional Loss - ACAT1 ENSG00000075239 CDS Human protein_coding chr11:107992360 chr11:107992362 nonsynonymous SNV 0.012 1 23 hm5C_associated_SNPs_91637 0 0 1 0 1 ACAT1 chr11:107992405 5'GT 107992405 Upstream 44bp
chr10 51579259 51579259 1 + C T LUAD 51579256 + 51579236 51579276 41 GTGGAGTTCTCCGGGCTGAACAGCAAATTAAAGATAACTTG GTGGAGTTCTCCGGGCTGAACAGTAAATTAAAGATAACTTG < 41bp 0.747931194485541 0.540000400468939 0.6263156 0.6222385 prediction 0.415861588033205 Functional Loss - NCOA4 ENSG00000138293 CDS Human other chr10:51579256 chr10:51579259 stopgain . 0 24 hm5C_associated_SNPs_91638 0 0 1 0 1 NCOA4 chr10:51579282 5'GT 51579282 Upstream 24bp
chr12 93134677 93134677 1 + G A rs116042545 93134674 + 93134654 93134694 41 TGCAAACTCATGAATATCTCCTAGATGTGGATTTATGGAGA TGCAAACTCATGAATATCTCCTAAATGTGGATTTATGGAGA < 41bp 0.707928190198018 0.488385629691875 0.24996746 0.12258443 prediction 0.415856380396036 Functional Loss - PLEKHG7 ENSG00000187510 CDS Human protein_coding chr12:93134674 chr12:93134677 nonsynonymous SNV 0.966 1 24 hm5C_associated_SNPs_91639 0 0 0 0 2 PLEKHG7 chr12:93134629 3'AG 93134629 Downstream 49bp
chr12 93134677 93134677 1 + G A rs116042545 93134674 + 93134654 93134694 41 TGCAAACTCATGAATATCTCCTAGATGTGGATTTATGGAGA TGCAAACTCATGAATATCTCCTAAATGTGGATTTATGGAGA < 41bp 0.707928190198018 0.488385629691875 0.24996746 0.12258443 prediction 0.415856380396036 Functional Loss - PLEKHG7 ENSG00000187510 CDS Human protein_coding chr12:93134674 chr12:93134677 nonsynonymous SNV 0.966 1 24 hm5C_associated_SNPs_91639 0 0 0 0 2 PLEKHG7 chr12:93134724 5'GT 93134724 Upstream 48bp
chr19 55019131 55019131 1 + G A BLCA 55019128 + 55019108 55019148 41 GCCCTTCCCAGACCCTCCATCTCGGCTGAGCCAGGCACTGT GCCCTTCCCAGACCCTCCATCTCAGCTGAGCCAGGCACTGT < 41bp 0.818337406934142 0.610411198402459 0.17254406 0.17452952 prediction 0.415852417063365 Functional Loss - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019128 chr19:55019131 synonymous SNV . 0 24 hm5C_associated_SNPs_91641 0 0 0 2 1 LAIR2 chr19:55019106 3'AG 55019106 Downstream 26bp
chr8 76320347 76320347 1 + G T rs543894028 76320345 + 76320325 76320365 41 AGGCCAGGCCGTGTTGAAAGCAGATACCCCGAGGCCTCGCC AGGCCAGGCCGTGTTGAAAGCATATACCCCGAGGCCTCGCC < 41bp 0.707926110597931 0.355684447427767 0.4736244 0.12915114 prediction 0.415852221195862 Functional Loss - HNF4G ENSG00000164749 UTR5 Human protein_coding chr8:76320345 chr8:76320347 . . 0 23 hm5C_associated_SNPs_91642 0 0 0 0 1 HNF4G chr8:76320397 5'GT 76320397 Upstream 51bp
chr11 5653937 5653937 1 + C T BLCA 5653934 + 5653914 5653954 41 TTTGTGAGCGGTCTCAGGAGCACCGTGGTCACCACACAGTC TTTGTGAGCGGTCTCAGGAGCACTGTGGTCACCACACAGTC < 41bp 0.730411207078001 0.522486231740534 0.21161395 0.14055839 prediction 0.415849950674934 Functional Loss - TRIM34;TRIM6-TRIM34 ENSG00000258588;ENSG00000258659 CDS Human other chr11:5653934 chr11:5653937 nonsynonymous SNV 0.961 1 24 hm5C_associated_SNPs_91644 0 0 0 0 1 TRIM34;TRIM6-TRIM34 chr11:5653984 5'GT 5653984 Upstream 48bp
chr20 35509082 35509082 1 + G T SARC 35509080 + 35509060 35509100 41 ATTTGGAGCCTTCTCCTCCTCGGCTATCCGACTCAGCAAAG ATTTGGAGCCTTCTCCTCCTCGTCTATCCGACTCAGCAAAG < 41bp 0.707923908976487 0.351105466696886 0.18920666 0.09175947 prediction 0.415847817952974 Functional Loss - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35509080 chr20:35509082 nonsynonymous SNV 0.901 1 23 hm5C_associated_SNPs_91645 0 0 0 0 2 TLDC2 chr20:35509058 3'AG 35509058 Downstream 25bp
chr20 35509082 35509082 1 + G T SARC 35509080 + 35509060 35509100 41 ATTTGGAGCCTTCTCCTCCTCGGCTATCCGACTCAGCAAAG ATTTGGAGCCTTCTCCTCCTCGTCTATCCGACTCAGCAAAG < 41bp 0.707923908976487 0.351105466696886 0.18920666 0.09175947 prediction 0.415847817952974 Functional Loss - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35509080 chr20:35509082 nonsynonymous SNV 0.901 1 23 hm5C_associated_SNPs_91645 0 0 0 0 2 TLDC2 chr20:35509153 5'GT 35509153 Upstream 72bp
chr1 32627617 32627617 1 + A T LUAD 32627615 + 32627595 32627635 41 GGGCCCTGTCAAATCTCTGCCGAGGGAAAAACCCACCCCCA GGGCCCTGTCAAATCTCTGCCGTGGGAAAAACCCACCCCCA < 41bp 0.735917125871498 0.527994946034368 0.90224445 0.669362 prediction 0.415844359674261 Functional Loss - KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32627615 chr1:32627617 synonymous SNV . 0 23 hm5C_associated_SNPs_91646 0 0 1 0 2 KPNA6 chr1:32627548 3'AG 32627548 Downstream 70bp
chr1 32627617 32627617 1 + A T LUAD 32627615 + 32627595 32627635 41 GGGCCCTGTCAAATCTCTGCCGAGGGAAAAACCCACCCCCA GGGCCCTGTCAAATCTCTGCCGTGGGAAAAACCCACCCCCA < 41bp 0.735917125871498 0.527994946034368 0.90224445 0.669362 prediction 0.415844359674261 Functional Loss - KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32627615 chr1:32627617 synonymous SNV . 0 23 hm5C_associated_SNPs_91646 0 0 1 0 2 KPNA6 chr1:32627647 5'GT 32627647 Upstream 31bp
chr1 227920624 227920624 1 - G A STAD 227920627 - 227920607 227920647 41 TGCGCCGTGCAGGAGGAGGTCAGCGAGTGGAGGGACTCCAT TGCGCCGTGCAGGAGGAGGTCAGTGAGTGGAGGGACTCCAT < 41bp 0.716284253904498 0.508362839313959 0.85723394 0.8281585 prediction 0.41584282918108 Functional Loss - JMJD4 ENSG00000081692 CDS Human protein_coding chr1:227920627 chr1:227920624 synonymous SNV . 0 24 hm5C_associated_SNPs_91647 0 0 1 0 1 JMJD4 chr1:227920582 5'GT 227920582 Upstream 43bp
chr22 23503088 23503088 1 + C T UCEC 23503085 + 23503065 23503105 41 GGCGAGAACGTGAAGGCATTCTTCAGCCGCGTAGCCGCCCT GGCGAGAACGTGAAGGCATTCTTTAGCCGCGTAGCCGCCCT < 41bp 0.772604584130846 0.564686492734552 0.444288 0.08595243 prediction 0.415836182792588 Functional Loss - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23503085 chr22:23503088 synonymous SNV . 0 24 hm5C_associated_SNPs_91651 0 0 1 0 2 RAB36 chr22:23503066 3'AG 23503066 Downstream 23bp
chr22 23503088 23503088 1 + C T UCEC 23503085 + 23503065 23503105 41 GGCGAGAACGTGAAGGCATTCTTCAGCCGCGTAGCCGCCCT GGCGAGAACGTGAAGGCATTCTTTAGCCGCGTAGCCGCCCT < 41bp 0.772604584130846 0.564686492734552 0.444288 0.08595243 prediction 0.415836182792588 Functional Loss - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23503085 chr22:23503088 synonymous SNV . 0 24 hm5C_associated_SNPs_91651 0 0 1 0 2 RAB36 chr22:23503185 5'GT 23503185 Upstream 98bp
chr7 5112640 5112640 1 + C T LUAD 5112638 + 5112618 5112658 41 ATTGATGGGGCTGTGGTGGCCACGCGACCAGAAAGCCGGGG ATTGATGGGGCTGTGGTGGCCATGCGACCAGAAAGCCGGGG < 41bp 0.80278398977115 0.594868885976299 0.39071724 0.37078452 prediction 0.415830207589702 Functional Loss - RBAKDN ENSG00000272968 CDS Human protein_coding chr7:5112638 chr7:5112640 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_91652 0 0 0 0 1 RBAKDN chr7:5112553 3'AG 5112553 Downstream 88bp
chr1 11808667 11808667 1 + G T LUSC 11808665 + 11808645 11808685 41 GGGTGAGCTCCTGGTCCACACTGGTGAGGCCACCACCTCCA GGGTGAGCTCCTGGTCCACACTTGTGAGGCCACCACCTCCA < 41bp 0.911966066249663 0.704051419034942 0.3575946 0.15958539 prediction 0.415829294429441 Functional Loss - AGTRAP ENSG00000177674 CDS Human protein_coding chr1:11808665 chr1:11808667 nonsynonymous SNV 0.032 3 23 hm5C_associated_SNPs_91654 0 0 1 2 1 AGTRAP chr1:11808667 5'GT 11808667 Upstream 1bp
chr7 130027763 130027763 1 + C T OV 130027760 + 130027740 130027780 41 ACACTGGGCGCTATGGCTTCCTGCTGCCAGCCTCCCAGATC ACACTGGGCGCTATGGCTTCCTGTTGCCAGCCTCCCAGATC < 41bp 0.713450581990972 0.505538050549342 0.061083376 0.027804852 prediction 0.415825062883261 Functional Loss - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130027760 chr7:130027763 synonymous SNV . 0 24 hm5C_associated_SNPs_91655 0 0 0 0 1 CPA1 chr7:130027665 3'AG 130027665 Downstream 99bp
chr7 44802875 44802875 1 + G T BRCA 44802871 + 44802851 44802891 41 TCAGTAAAGCGGAACTTCAGCAGCGGCACCATCCCTGGCAC TCAGTAAAGCGGAACTTCAGCAGCTGCACCATCCCTGGCAC < 41bp 0.707912425064272 0.493973502283959 0.8841526 0.8980188 prediction 0.415824850128544 Functional Loss - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44802871 chr7:44802875 nonsynonymous SNV 0.964 2 25 hm5C_associated_SNPs_91656 0 0 1 0 1 ZMIZ2 chr7:44802855 3'AG 44802855 Downstream 21bp
chr15 25463663 25463663 1 + A C STAD 25463659 + 25463639 25463679 41 GGTGCTCAGCCATCGGTGCGCTGAAGCTCCAGCCCTTCCTG GGTGCTCAGCCATCGGTGCGCTGACGCTCCAGCCCTTCCTG < 41bp 0.707910336074048 0.359105305766155 0.67316943 0.40193656 prediction 0.415820672148096 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25463659 chr15:25463663 . . 0 25 hm5C_associated_SNPs_91657 0 0 0 0 2 SNHG14 chr15:25463587 3'AG 25463587 Downstream 77bp
chr15 25463663 25463663 1 + A C STAD 25463659 + 25463639 25463679 41 GGTGCTCAGCCATCGGTGCGCTGAAGCTCCAGCCCTTCCTG GGTGCTCAGCCATCGGTGCGCTGACGCTCCAGCCCTTCCTG < 41bp 0.707910336074048 0.359105305766155 0.67316943 0.40193656 prediction 0.415820672148096 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25463659 chr15:25463663 . . 0 25 hm5C_associated_SNPs_91657 0 0 0 0 2 SNHG14 chr15:25463711 5'GT 25463711 Upstream 49bp
chrX 3002640 3002640 1 + G T LUSC 3002638 + 3002618 3002658 41 CATGCGGGGGCACGAGATCACGGAGCAGCCCATGAAGGCTG CATGCGGGGGCACGAGATCACGTAGCAGCCCATGAAGGCTG < 41bp 0.92399098940338 0.716082631913731 0.9054295 0.48363996 prediction 0.415816714979298 Functional Loss - ARSF ENSG00000062096 CDS Human protein_coding chrX:3002638 chrX:3002640 stopgain 0.543 0 23 hm5C_associated_SNPs_91659 0 0 0 0 1 ARSF chrX:3002707 5'GT 3002707 Upstream 68bp
chr8 39564360 39564360 1 + G A SKCM 39564357 + 39564337 39564377 41 GCTTCCCTGGACATAGACCTCCAGATTGTAAATTCCAGTTT GCTTCCCTGGACATAGACCTCCAAATTGTAAATTCCAGTTT < 41bp 0.707904664606168 0.479416267963925 0.38842872 0.36192164 prediction 0.415809329212336 Functional Loss - ADAM18 ENSG00000168619 CDS Human protein_coding chr8:39564357 chr8:39564360 nonsynonymous SNV 0.969 1 24 hm5C_associated_SNPs_91661 0 0 0 0 2 ADAM18 chr8:39564309 3'AG 39564309 Downstream 52bp
chr8 39564360 39564360 1 + G A SKCM 39564357 + 39564337 39564377 41 GCTTCCCTGGACATAGACCTCCAGATTGTAAATTCCAGTTT GCTTCCCTGGACATAGACCTCCAAATTGTAAATTCCAGTTT < 41bp 0.707904664606168 0.479416267963925 0.38842872 0.36192164 prediction 0.415809329212336 Functional Loss - ADAM18 ENSG00000168619 CDS Human protein_coding chr8:39564357 chr8:39564360 nonsynonymous SNV 0.969 1 24 hm5C_associated_SNPs_91661 0 0 0 0 2 ADAM18 chr8:39564423 5'GT 39564423 Upstream 64bp
chr12 120884352 120884352 1 + G A SARC 120884349 + 120884329 120884369 41 GGGCGCCAGGGCTTCACCTCCAAGGCGGATCCTCAGGTAAA GGGCGCCAGGGCTTCACCTCCAAAGCGGATCCTCAGGTAAA < 41bp 0.811630609129409 0.603734714529366 0.9060484 0.79340804 prediction 0.415791789200087 Functional Loss - GATC ENSG00000257218 CDS Human protein_coding chr12:120884349 chr12:120884352 synonymous SNV . 0 24 hm5C_associated_SNPs_91666 0 0 1 0 1 GATC chr12:120884364 5'GT 120884364 Upstream 13bp
chr5 81601253 81601253 1 + C T UCEC 81601251 + 81601231 81601271 41 GGAAAGCAAGGGTTCTCAAACTCGTTTTGAAAACAGCAAAG GGAAAGCAAGGGTTCTCAAACTTGTTTTGAAAACAGCAAAG < 41bp 0.707895290682615 0.443035589329915 0.4372391 0.3391562 prediction 0.415790581365231 Functional Loss - ATP6AP1L ENSG00000205464 CDS Human protein_coding chr5:81601251 chr5:81601253 synonymous SNV . 0 23 hm5C_associated_SNPs_91667 0 0 0 0 1 ATP6AP1L chr5:81601300 5'GT 81601300 Upstream 48bp
chr11 379671 379671 1 + C T SKCM 379668 + 379648 379688 41 GGCCACTGCGCCTGGCCTGGCGCCAGGACGTGATGGTTCAC GGCCACTGCGCCTGGCCTGGCGCTAGGACGTGATGGTTCAC < 41bp 0.724227170472441 0.516332161978929 0.40007383 0.35342705 prediction 0.415790016987026 Functional Loss - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:379668 chr11:379671 stopgain 1.000 0 24 hm5C_associated_SNPs_91668 0 0 1 0 1 B4GALNT4 chr11:379701 5'GT 379701 Upstream 31bp
chr2 39944352 39944352 1 + G A OV 39944349 + 39944329 39944369 41 TATCCGTTTATTAGCCGGACCAAGATTGCACAGCTAAAGTC TATCCGTTTATTAGCCGGACCAAAATTGCACAGCTAAAGTC < 41bp 0.797814591275152 0.589921196103427 0.26551893 0.17011455 prediction 0.41578679034345 Functional Loss - TMEM178A ENSG00000152154 CDS Human protein_coding chr2:39944349 chr2:39944352 synonymous SNV . 0 24 hm5C_associated_SNPs_91669 0 0 0 0 1 TMEM178A chr2:39944408 5'GT 39944408 Upstream 57bp
chr11 117152658 117152658 1 + C T UCS 117152656 + 117152636 117152676 41 ACCCAGTCCCTCTCTGGCTCCTCGGATGCCCTTCTCCATTG ACCCAGTCCCTCTCTGGCTCCTTGGATGCCCTTCTCCATTG < 41bp 0.87855265497478 0.670659557023835 0.22047868 0.039390802 prediction 0.41578619590189 Functional Loss - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152656 chr11:117152658 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_91670 0 0 1 0 1 RNF214 chr11:117152610 3'AG 117152610 Downstream 49bp
chrX 70612511 70612511 1 + G A UCEC 70612508 + 70612488 70612528 41 GTGACTGGGGTGGCAGATCCCACGGGGTGTGGTGAAGGATT GTGACTGGGGTGGCAGATCCCACAGGGTGTGGTGAAGGATT < 41bp 0.78549264851426 0.577605315115175 0.8856816 0.81115615 prediction 0.415774666798169 Functional Loss - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70612508 chrX:70612511 synonymous SNV . 0 24 hm5C_associated_SNPs_91673 0 0 1 0 2 TAF1 chrX:70612419 3'AG 70612419 Downstream 93bp
chrX 70612511 70612511 1 + G A UCEC 70612508 + 70612488 70612528 41 GTGACTGGGGTGGCAGATCCCACGGGGTGTGGTGAAGGATT GTGACTGGGGTGGCAGATCCCACAGGGTGTGGTGAAGGATT < 41bp 0.78549264851426 0.577605315115175 0.8856816 0.81115615 prediction 0.415774666798169 Functional Loss - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70612508 chrX:70612511 synonymous SNV . 0 24 hm5C_associated_SNPs_91673 0 0 1 0 2 TAF1 chrX:70612568 5'GT 70612568 Upstream 58bp
chr22 25715755 25715755 1 + C T rs558488595 25715753 + 25715733 25715773 41 GGTCAGCCCAAGGCCACCCCCTCGGTCACTCTGTTCCTGCC GGTCAGCCCAAGGCCACCCCCTTGGTCACTCTGTTCCTGCC < 41bp 0.796331758564554 0.588447442923863 0.20058626 0.14600584 prediction 0.415768631281382 Functional Loss - IGLL3P ENSG00000206066 ncRNA_exonic Human unprocessed_pseudogene chr22:25715753 chr22:25715755 . . 0 23 hm5C_associated_SNPs_91676 0 0 0 0 1 IGLL3P chr22:25715734 3'AG 25715734 Downstream 22bp
chr11 44074611 44074611 1 + G A SKCM 44074608 + 44074588 44074628 41 AGAGGAAGCCCTGCTTGAAGCTAGGCTTGAGGTAAGGTGGG AGAGGAAGCCCTGCTTGAAGCTAAGCTTGAGGTAAGGTGGG < 41bp 0.707881769542704 0.45709328947276 0.14919138 0.043454945 prediction 0.415763539085408 Functional Loss - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44074608 chr11:44074611 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_91678 0 0 0 0 2 ACCSL chr11:44074541 3'AG 44074541 Downstream 71bp
chr11 44074611 44074611 1 + G A SKCM 44074608 + 44074588 44074628 41 AGAGGAAGCCCTGCTTGAAGCTAGGCTTGAGGTAAGGTGGG AGAGGAAGCCCTGCTTGAAGCTAAGCTTGAGGTAAGGTGGG < 41bp 0.707881769542704 0.45709328947276 0.14919138 0.043454945 prediction 0.415763539085408 Functional Loss - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44074608 chr11:44074611 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_91678 0 0 0 0 2 ACCSL chr11:44074618 5'GT 44074618 Upstream 8bp
chr22 45826846 45826846 1 + G A UCEC 45826843 + 45826823 45826863 41 GGCGGAGGATTCAGGGGGCTCGCGCCACCCTGCTGTTTGAG GGCGGAGGATTCAGGGGGCTCGCACCACCCTGCTGTTTGAG < 41bp 0.707880690182989 0.447269752821394 0.8477419 0.61521125 prediction 0.415761380365979 Functional Loss - RIBC2 ENSG00000128408 CDS Human protein_coding chr22:45826843 chr22:45826846 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_91679 0 0 0 0 1 RIBC2 chr22:45826780 3'AG 45826780 Downstream 67bp
chr10 69908222 69908222 1 + C T COAD 69908219 + 69908199 69908239 41 AACCTCGTGTGGCAACCATCCAGCAGGTACAAGAATCCAAG AACCTCGTGTGGCAACCATCCAGTAGGTACAAGAATCCAAG < 41bp 0.732317136623516 0.524436949913902 0.4222968 0.27640998 prediction 0.415760373419227 Functional Loss - MYPN ENSG00000138347 CDS Human protein_coding chr10:69908219 chr10:69908222 stopgain 0.997 0 24 hm5C_associated_SNPs_91681 0 0 0 0 1 MYPN chr10:69908224 5'GT 69908224 Upstream 3bp
chr8 20067030 20067030 1 + G T LUAD 20067027 + 20067007 20067047 41 GTTCTGGAAGTTAGTGGTTCCAAGGCAGTAGTTCAGGTAAG GTTCTGGAAGTTAGTGGTTCCAATGCAGTAGTTCAGGTAAG < 41bp 0.70787921229617 0.30859514527639 0.66781586 0.32582602 prediction 0.41575842459234 Functional Loss - ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20067027 chr8:20067030 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_91682 0 0 1 0 2 ATP6V1B2 chr8:20066944 3'AG 20066944 Downstream 87bp
chr8 20067030 20067030 1 + G T LUAD 20067027 + 20067007 20067047 41 GTTCTGGAAGTTAGTGGTTCCAAGGCAGTAGTTCAGGTAAG GTTCTGGAAGTTAGTGGTTCCAATGCAGTAGTTCAGGTAAG < 41bp 0.70787921229617 0.30859514527639 0.66781586 0.32582602 prediction 0.41575842459234 Functional Loss - ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20067027 chr8:20067030 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_91682 0 0 1 0 2 ATP6V1B2 chr8:20067042 5'GT 20067042 Upstream 13bp
chr20 62521244 62521244 1 + C T CESC 62521242 + 62521222 62521262 41 GAGAGAACGGCAGTGACAACCTCCCTTCCTCAGCGGGGAGT GAGAGAACGGCAGTGACAACCTTCCTTCCTCAGCGGGGAGT < 41bp 0.707874259852293 0.435180943234352 0.2044299 0.030698389 prediction 0.415748519704587 Functional Loss - TPD52L2 ENSG00000101150 CDS Human protein_coding chr20:62521242 chr20:62521244 synonymous SNV 0.046 0 23 hm5C_associated_SNPs_91685 0 0 1 0 1 TPD52L2 chr20:62521203 3'AG 62521203 Downstream 42bp
chr1 33235498 33235498 1 + G A SKCM 33235495 + 33235475 33235515 41 TTCCAGGCCTGAGGAATGAGCGTGAGGCACCAGGCACGCCC TTCCAGGCCTGAGGAATGAGCGTAAGGCACCAGGCACGCCC < 41bp 0.816797368117802 0.608931064814507 0.75238186 0.3892901 prediction 0.41573260660659 Functional Loss - KIAA1522 ENSG00000162522 CDS Human protein_coding chr1:33235495 chr1:33235498 nonsynonymous SNV 0.203 0 24 hm5C_associated_SNPs_91691 0 0 1 0 1 KIAA1522 chr1:33235481 3'AG 33235481 Downstream 18bp
chrX 153678245 153678245 1 + C T UCEC 153678242 + 153678222 153678262 41 GGCTCCCAGCATCACAGCTTCTACGACTTCATCGTCACCAA GGCTCCCAGCATCACAGCTTCTATGACTTCATCGTCACCAA < 41bp 0.708714685742111 0.500849773738213 0.062737346 0.121378034 prediction 0.415729824007796 Functional Loss - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153678242 chrX:153678245 synonymous SNV . 0 24 hm5C_associated_SNPs_91692 0 0 1 0 2 FAM50A chrX:153678231 3'AG 153678231 Downstream 15bp
chrX 153678245 153678245 1 + C T UCEC 153678242 + 153678222 153678262 41 GGCTCCCAGCATCACAGCTTCTACGACTTCATCGTCACCAA GGCTCCCAGCATCACAGCTTCTATGACTTCATCGTCACCAA < 41bp 0.708714685742111 0.500849773738213 0.062737346 0.121378034 prediction 0.415729824007796 Functional Loss - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153678242 chrX:153678245 synonymous SNV . 0 24 hm5C_associated_SNPs_91692 0 0 1 0 2 FAM50A chrX:153678279 5'GT 153678279 Upstream 35bp
chr20 5966664 5966664 1 + G T UCEC 5966662 + 5966642 5966682 41 TGTGTACCCAAGGCTATCCACAGAAGCTGCTCGAGTTCTTC TGTGTACCCAAGGCTATCCACATAAGCTGCTCGAGTTCTTC < 41bp 0.707862197133636 0.351041427271328 0.7959898 0.16097593 prediction 0.415724394267271 Functional Loss - MCM8 ENSG00000125885 CDS Human protein_coding chr20:5966662 chr20:5966664 stopgain 0.977 1 23 hm5C_associated_SNPs_91693 0 0 1 0 1 MCM8 chr20:5966568 3'AG 5966568 Downstream 97bp
chr11 63988132 63988132 1 + G A SARC 63988129 + 63988109 63988149 41 CCCCGTTTCCAGCGAAAGTTCAAGGCCAAGCAGGTACCAGA CCCCGTTTCCAGCGAAAGTTCAAAGCCAAGCAGGTACCAGA < 41bp 0.707860092528674 0.45601036426623 0.88272136 0.42589474 prediction 0.415720185057347 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63988129 chr11:63988132 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_91694 0 0 0 0 1 FERMT3 chr11:63988141 5'GT 63988141 Upstream 10bp
chr2 230875459 230875459 1 + C T UCEC 230875456 + 230875436 230875476 41 GAACAGATAGTCCAGTCGACCTGCGACACCATCACTCCTGA GAACAGATAGTCCAGTCGACCTGTGACACCATCACTCCTGA < 41bp 0.716350593236734 0.508495750729384 0.21919572 0.17461658 prediction 0.415709685014701 Functional Loss - FBXO36 ENSG00000153832 CDS Human protein_coding chr2:230875456 chr2:230875459 synonymous SNV . 0 24 hm5C_associated_SNPs_91697 0 0 1 0 1 FBXO36 chr2:230875412 3'AG 230875412 Downstream 48bp
chr4 89576376 89576376 1 + G A LUSC 89576373 + 89576353 89576393 41 GTTCCTGTGGGCAACTTGGACACGACTCCATGAATGATGAG GTTCCTGTGGGCAACTTGGACACAACTCCATGAATGATGAG < 41bp 0.797000580816958 0.589149776730664 0.09269664 0.0721789 prediction 0.415701608172587 Functional Loss - HERC3 ENSG00000138641 CDS Human protein_coding chr4:89576373 chr4:89576376 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_91702 0 0 1 0 1 HERC3 chr4:89576455 5'GT 89576455 Upstream 80bp
chr12 4776747 4776747 1 + G A rs371290259 4776744 + 4776724 4776764 41 CTGGAGTGCGGTGGCGTGATCTCGGCTCACTGCAACCTCTG CTGGAGTGCGGTGGCGTGATCTCAGCTCACTGCAACCTCTG < 41bp 0.793868324439122 0.586021918254917 0.8143235 0.3623076 prediction 0.41569281236841 Functional Loss - NDUFA9 ENSG00000139180 intronic Human protein_coding chr12:4776744 chr12:4776747 . . 0 24 hm5C_associated_SNPs_91708 0 0 0 0 1 NDUFA9 chr12:4776820 5'GT 4776820 Upstream 74bp
chr3 52283003 52283003 1 + G A COAD 52283000 + 52282980 52283020 41 ACTAGGAACACTGGCTGTCTCCCGGGGCCTGGGAGACCATC ACTAGGAACACTGGCTGTCTCCCAGGGCCTGGGAGACCATC < 41bp 0.707843933295631 0.459774434051603 0.5431026 0.07124853 prediction 0.415687866591262 Functional Loss - PPM1M ENSG00000164088 CDS Human protein_coding chr3:52283000 chr3:52283003 nonsynonymous SNV 0.948 4 24 hm5C_associated_SNPs_91710 0 0 0 0 2 PPM1M chr3:52282972 3'AG 52282972 Downstream 32bp
chr3 52283003 52283003 1 + G A COAD 52283000 + 52282980 52283020 41 ACTAGGAACACTGGCTGTCTCCCGGGGCCTGGGAGACCATC ACTAGGAACACTGGCTGTCTCCCAGGGCCTGGGAGACCATC < 41bp 0.707843933295631 0.459774434051603 0.5431026 0.07124853 prediction 0.415687866591262 Functional Loss - PPM1M ENSG00000164088 CDS Human protein_coding chr3:52283000 chr3:52283003 nonsynonymous SNV 0.948 4 24 hm5C_associated_SNPs_91710 0 0 0 0 2 PPM1M chr3:52283079 5'GT 52283079 Upstream 77bp
chr4 158065008 158065008 1 + C T SKCM 158065005 + 158064985 158065025 41 TTCACCCTGAGGAGGCAGGTCGGCTTTTACATGATGGGGGT TTCACCCTGAGGAGGCAGGTCGGTTTTTACATGATGGGGGT < 41bp 0.741134404334837 0.533290693594378 0.313231 0.28358456 prediction 0.415687421480919 Functional Loss - GLRB ENSG00000109738 CDS Human protein_coding chr4:158065005 chr4:158065008 synonymous SNV . 0 24 hm5C_associated_SNPs_91711 0 0 0 0 1 GLRB chr4:158064959 3'AG 158064959 Downstream 50bp
chr22 45121160 45121160 1 + G A LUAD 45121157 + 45121137 45121177 41 ACAGAGCTGGGGTCCTTCTTCACGGAGTACCTGCAGGTAGG ACAGAGCTGGGGTCCTTCTTCACAGAGTACCTGCAGGTAGG < 41bp 0.827490515360933 0.61964991457646 0.82530516 0.39166215 prediction 0.415681201568946 Functional Loss - PRR5;PRR5-ARHGAP8 ENSG00000186654;ENSG00000241484;ENSG00000248405 CDS Human other chr22:45121157 chr22:45121160 synonymous SNV . 0 24 hm5C_associated_SNPs_91712 0 0 1 0 1 PRR5;PRR5-ARHGAP8 chr22:45121172 5'GT 45121172 Upstream 13bp
chr19 7589875 7589875 1 + C T SKCM 7589873 + 7589853 7589893 41 AGCGGCTTCTGACCCCCAACCCCGGGTATGGGACCCAGGCG AGCGGCTTCTGACCCCCAACCCTGGGTATGGGACCCAGGCG < 41bp 0.707835351476814 0.477706485385644 0.77409786 0.47256386 prediction 0.415670702953629 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7589873 chr19:7589875 synonymous SNV . 0 23 hm5C_associated_SNPs_91715 1 0 0 0 1 MCOLN1 chr19:7589847 3'AG 7589847 Downstream 29bp
chr19 3531983 3531983 1 + A C GBM 3531979 + 3531959 3531999 41 ATGATCCTGCAGAGGGACATCCGCACCCCGCCACTGCAGTC ATGATCCTGCAGAGGGACATCCGCCCCCCGCCACTGCAGTC < 41bp 0.707834193999848 0.295231469070784 0.16009903 0.24327552 prediction 0.415668387999696 Functional Loss - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3531979 chr19:3531983 nonsynonymous SNV 0.452 2 25 hm5C_associated_SNPs_91716 0 0 1 0 1 FZR1 chr19:3531909 3'AG 3531909 Downstream 75bp
chr12 58176623 58176623 1 + G A THYM 58176620 + 58176600 58176640 41 TCGCTGCGCGTGTTTCTGGTCGCGCGGACCGGGAGCTACCC TCGCTGCGCGTGTTTCTGGTCGCACGGACCGGGAGCTACCC < 41bp 0.707833608941474 0.46684987528592 0.89960194 0.8641781 prediction 0.415667217882948 Functional Loss - TSFM ENSG00000123297 CDS Human protein_coding chr12:58176620 chr12:58176623 synonymous SNV . 0 24 hm5C_associated_SNPs_91717 0 0 1 0 1 TSFM chr12:58176641 5'GT 58176641 Upstream 19bp
chr1 3673382 3673382 1 + C T BLCA 3673379 + 3673359 3673399 41 TCCCAGACTTTGAGTCCGGTCACCAGCAGCTCAGTCGCATC TCCCAGACTTTGAGTCCGGTCACTAGCAGCTCAGTCGCATC < 41bp 0.728551367732812 0.520719277771551 0.60895395 0.28675503 prediction 0.415664179922523 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3673379 chr1:3673382 synonymous SNV . 0 24 hm5C_associated_SNPs_91718 0 0 0 0 1 CCDC27 chr1:3673454 5'GT 3673454 Upstream 73bp
chr11 20648379 20648379 1 + G T UCEC 20648376 + 20648356 20648396 41 ACACCCAAGTGGGAGAAACTCACGGATGCCACGGTGGGCTT ACACCCAAGTGGGAGAAACTCACTGATGCCACGGTGGGCTT < 41bp 0.939258998144262 0.731429702190135 0.9068619 0.12190089 prediction 0.415658591908253 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20648376 chr11:20648379 synonymous SNV . 0 24 hm5C_associated_SNPs_91719 0 0 0 0 1 SLC6A5 chr11:20648388 5'GT 20648388 Upstream 10bp
chr2 1241712 1241712 1 + C T rs149894156 1241709 + 1241689 1241729 41 ACGGAGTCAGCTCTGGGATCCTCCGGTTTTACACAGCCCAG ACGGAGTCAGCTCTGGGATCCTCTGGTTTTACACAGCCCAG < 41bp 0.707827626637038 0.494942621634481 0.33447477 0.26334414 prediction 0.415655253274077 Functional Loss - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1241709 chr2:1241712 nonsynonymous SNV 0.002 3 24 hm5C_associated_SNPs_91723 0 0 0 0 2 SNTG2 chr2:1241660 3'AG 1241660 Downstream 53bp
chr2 1241712 1241712 1 + C T rs149894156 1241709 + 1241689 1241729 41 ACGGAGTCAGCTCTGGGATCCTCCGGTTTTACACAGCCCAG ACGGAGTCAGCTCTGGGATCCTCTGGTTTTACACAGCCCAG < 41bp 0.707827626637038 0.494942621634481 0.33447477 0.26334414 prediction 0.415655253274077 Functional Loss - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1241709 chr2:1241712 nonsynonymous SNV 0.002 3 24 hm5C_associated_SNPs_91723 0 0 0 0 2 SNTG2 chr2:1241789 5'GT 1241789 Upstream 78bp
chr2 1241711 1241711 1 + C T BLCA 1241709 + 1241689 1241729 41 ACGGAGTCAGCTCTGGGATCCTCCGGTTTTACACAGCCCAG ACGGAGTCAGCTCTGGGATCCTTCGGTTTTACACAGCCCAG < 41bp 0.707827626637038 0.428795793617485 0.33447477 0.16177186 prediction 0.415655253274077 Functional Loss - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1241709 chr2:1241711 synonymous SNV . 0 23 hm5C_associated_SNPs_91724 0 0 0 0 2 SNTG2 chr2:1241660 3'AG 1241660 Downstream 52bp
chr2 1241711 1241711 1 + C T BLCA 1241709 + 1241689 1241729 41 ACGGAGTCAGCTCTGGGATCCTCCGGTTTTACACAGCCCAG ACGGAGTCAGCTCTGGGATCCTTCGGTTTTACACAGCCCAG < 41bp 0.707827626637038 0.428795793617485 0.33447477 0.16177186 prediction 0.415655253274077 Functional Loss - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1241709 chr2:1241711 synonymous SNV . 0 23 hm5C_associated_SNPs_91724 0 0 0 0 2 SNTG2 chr2:1241789 5'GT 1241789 Upstream 79bp
chr2 1241710 1241710 1 + T C STAD 1241709 + 1241689 1241729 41 ACGGAGTCAGCTCTGGGATCCTCCGGTTTTACACAGCCCAG ACGGAGTCAGCTCTGGGATCCCCCGGTTTTACACAGCCCAG < 41bp 0.707827626637038 0.456375924349985 0.33447477 0.1149953 prediction 0.415655253274077 Functional Loss - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1241709 chr2:1241710 nonsynonymous SNV 0.008 4 22 hm5C_associated_SNPs_91725 0 0 0 0 2 SNTG2 chr2:1241660 3'AG 1241660 Downstream 51bp
chr2 1241710 1241710 1 + T C STAD 1241709 + 1241689 1241729 41 ACGGAGTCAGCTCTGGGATCCTCCGGTTTTACACAGCCCAG ACGGAGTCAGCTCTGGGATCCCCCGGTTTTACACAGCCCAG < 41bp 0.707827626637038 0.456375924349985 0.33447477 0.1149953 prediction 0.415655253274077 Functional Loss - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1241709 chr2:1241710 nonsynonymous SNV 0.008 4 22 hm5C_associated_SNPs_91725 0 0 0 0 2 SNTG2 chr2:1241789 5'GT 1241789 Upstream 80bp
chr5 118860938 118860938 1 + T C rs11539471 118860937 + 118860917 118860957 41 TTGTACCGCCTCAGTGGAGACTGGAATCCCTTACACATTGA TTGTACCGCCTCAGTGGAGACCGGAATCCCTTACACATTGA < 41bp 0.835815061281317 0.627988980896977 0.24996719 0.4870756 prediction 0.41565216076868 Functional Loss - HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118860937 chr5:118860938 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_91728 3 0 1 0 2 HSD17B4 chr5:118860911 3'AG 118860911 Downstream 28bp
chr5 118860938 118860938 1 + T C rs11539471 118860937 + 118860917 118860957 41 TTGTACCGCCTCAGTGGAGACTGGAATCCCTTACACATTGA TTGTACCGCCTCAGTGGAGACCGGAATCCCTTACACATTGA < 41bp 0.835815061281317 0.627988980896977 0.24996719 0.4870756 prediction 0.41565216076868 Functional Loss - HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118860937 chr5:118860938 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_91728 3 0 1 0 2 HSD17B4 chr5:118860980 5'GT 118860980 Upstream 43bp
chr5 137518570 137518570 1 + G A CESC 137518567 + 137518547 137518587 41 CAGGAGGAGCTGTCCACTTCCTTGAAGAGGAGTGTCTACAT CAGGAGGAGCTGTCCACTTCCTTAAAGAGGAGTGTCTACAT < 41bp 0.803447309298885 0.595622539854394 0.23969907 0.18955615 prediction 0.415649538888983 Functional Loss - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137518567 chr5:137518570 synonymous SNV . 0 24 hm5C_associated_SNPs_91729 0 0 1 0 1 KIF20A chr5:137518550 3'AG 137518550 Downstream 21bp
chr2 73899474 73899474 1 + C T UCEC 73899472 + 73899452 73899492 41 GAACGGTGCCGAAAAACACACTCGAGCCAACTCCAAGTTCC GAACGGTGCCGAAAAACACACTTGAGCCAACTCCAAGTTCC < 41bp 0.781568496185103 0.573745113887093 0.4523244 0.20985219 prediction 0.415646764596021 Functional Loss - ALMS1P1 ENSG00000163016 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:73899472 chr2:73899474 . . 0 23 hm5C_associated_SNPs_91730 0 0 1 0 1 ALMS1P1 chr2:73899436 3'AG 73899436 Downstream 39bp
chr9 139927624 139927624 1 + C T rs79892804 139927622 + 139927602 139927642 41 ACCACGTTGCCACTCTGCTGCACGGGACCTTGTGTGGTCCC ACCACGTTGCCACTCTGCTGCATGGGACCTTGTGTGGTCCC < 41bp 0.788867864749488 0.581045137123637 0.4262141 0.42521483 prediction 0.415645455251702 Functional Loss - C9orf139 ENSG00000180539 CDS Human antisense chr9:139927622 chr9:139927624 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_91731 0 0 0 0 1 C9orf139 chr9:139927683 5'GT 139927683 Upstream 60bp
chr17 7454142 7454142 1 + C T UCEC 7454140 + 7454120 7454160 41 TAAAGGCCGGAAAACACGGGCTCGAAGAGCGATCGCAGCCC TAAAGGCCGGAAAACACGGGCTTGAAGAGCGATCGCAGCCC < 41bp 0.70782126138717 0.416587368711053 0.13465264 0.08791083 prediction 0.415642522774339 Functional Loss - TNFSF12;TNFSF12-TNFSF13 ENSG00000239697;ENSG00000248871 CDS Human other chr17:7454140 chr17:7454142 stopgain 0.579 0 23 hm5C_associated_SNPs_91732 0 0 0 0 2 TNFSF12;TNFSF12-TNFSF13 chr17:7454116 3'AG 7454116 Downstream 27bp
chr17 7454142 7454142 1 + C T UCEC 7454140 + 7454120 7454160 41 TAAAGGCCGGAAAACACGGGCTCGAAGAGCGATCGCAGCCC TAAAGGCCGGAAAACACGGGCTTGAAGAGCGATCGCAGCCC < 41bp 0.70782126138717 0.416587368711053 0.13465264 0.08791083 prediction 0.415642522774339 Functional Loss - TNFSF12;TNFSF12-TNFSF13 ENSG00000239697;ENSG00000248871 CDS Human other chr17:7454140 chr17:7454142 stopgain 0.579 0 23 hm5C_associated_SNPs_91732 0 0 0 0 2 TNFSF12;TNFSF12-TNFSF13 chr17:7454169 5'GT 7454169 Upstream 28bp
chr4 74702545 74702545 1 + C T SKCM 74702543 + 74702523 74702563 41 GCGCGCTGCTCGCGCTGCTGCTCCTGCTGACGCCGCCGGGG GCGCGCTGCTCGCGCTGCTGCTTCTGCTGACGCCGCCGGGG < 41bp 0.824827006973936 0.617006963035751 0.32972974 0.27223182 prediction 0.415640087876369 Functional Loss - CXCL6 ENSG00000124875 CDS Human protein_coding chr4:74702543 chr4:74702545 synonymous SNV . 0 23 hm5C_associated_SNPs_91734 0 0 0 0 1 CXCL6 chr4:74702576 5'GT 74702576 Upstream 32bp
chr1 160053787 160053787 1 + A T rs563935179 160053783 + 160053763 160053803 41 CAGCTCGGGCCCCCGCCGCACTCCAGGCGCCCGCAGCGCTC CAGCTCGGGCCCCCGCCGCACTCCTGGCGCCCGCAGCGCTC < 41bp 0.788729769875086 0.580909844952966 0.92083895 0.27642435 prediction 0.41563984984424 Functional Loss - KCNJ9 ENSG00000162728 UTR5 Human protein_coding chr1:160053783 chr1:160053787 . . 0 25 hm5C_associated_SNPs_91735 0 0 0 0 1 KCNJ9 chr1:160053707 3'AG 160053707 Downstream 81bp
chr17 61601685 61601685 1 + G A SKCM 61601682 + 61601662 61601702 41 CCCGCCTAGCGCAGGCCCTGCTGGGGGCTGAGGAGTGCAAG CCCGCCTAGCGCAGGCCCTGCTGAGGGCTGAGGAGTGCAAG < 41bp 0.8197509800378 0.611935116528227 0.7632575 0.30981082 prediction 0.415631727019145 Functional Loss - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61601682 chr17:61601685 nonsynonymous SNV 0.993 5 24 hm5C_associated_SNPs_91738 0 0 0 0 1 KCNH6 chr17:61601730 5'GT 61601730 Upstream 46bp
chr17 4435852 4435852 1 + G T STAD 4435849 + 4435829 4435869 41 TCTGGCAGGTGTCCCCTGTCCTGGGCATGATCACAGGAACA TCTGGCAGGTGTCCCCTGTCCTGTGCATGATCACAGGAACA < 41bp 0.707815105543289 0.293912121953886 0.40920013 0.12188774 prediction 0.415630211086577 Functional Loss - SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4435849 chr17:4435852 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_91739 0 0 0 0 1 SPNS2 chr17:4435837 3'AG 4435837 Downstream 16bp
chr9 124080957 124080957 1 + T C LIHC 124080956 + 124080936 124080976 41 TCCCCAGGTCTCGGTCCTTCCTGAGGGCGGTGAGACCCCAC TCCCCAGGTCTCGGTCCTTCCCGAGGGCGGTGAGACCCCAC < 41bp 0.811374522548458 0.603564650659999 0.5598669 0.9048705 prediction 0.415619743776919 Functional Loss - GSN ENSG00000148180 CDS Human protein_coding chr9:124080956 chr9:124080957 synonymous SNV . 0 22 hm5C_associated_SNPs_91743 0 0 1 0 1 GSN chr9:124080943 3'AG 124080943 Downstream 15bp
chr16 68732177 68732177 1 + C T UCEC 68732174 + 68732154 68732194 41 GACTATGAGGGCAGCGGCTCCGACGCCGCGTCCCTGAGCTC GACTATGAGGGCAGCGGCTCCGATGCCGCGTCCCTGAGCTC < 41bp 0.713232089120913 0.505431328874906 0.13319439 0.09197238 prediction 0.415601520492013 Functional Loss - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68732174 chr16:68732177 synonymous SNV . 0 24 hm5C_associated_SNPs_91751 1 0 0 0 1 CDH3 chr16:68732094 3'AG 68732094 Downstream 84bp
chr11 61491044 61491044 1 + G T UCEC 61491040 + 61491020 61491060 41 GTAACCTGCGGACCTACAACCTGCGGTCAGTCAGCGGGCTG GTAACCTGCGGACCTACAACCTGCTGTCAGTCAGCGGGCTG < 41bp 0.712081009438207 0.504282797973868 0.5733684 0.36116242 prediction 0.415596422928677 Functional Loss - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61491040 chr11:61491044 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_91753 0 0 1 0 1 DAGLA chr11:61491044 5'GT 61491044 Upstream 1bp
chr2 85663670 85663670 1 + G C THCA 85663666 + 85663646 85663686 41 GTGGACAGACACAGCGGCAGCCGGGAACTCACCTGCCTGCT GTGGACAGACACAGCGGCAGCCGGCAACTCACCTGCCTGCT < 41bp 0.707797336074318 0.384518092153733 0.9197601 0.9010701 prediction 0.415594672148635 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85663666 chr2:85663670 nonsynonymous SNV 0.796 0 25 hm5C_associated_SNPs_91754 0 0 0 5 2 SH2D6 chr2:85663589 3'AG 85663589 Downstream 82bp
chr2 85663670 85663670 1 + G C THCA 85663666 + 85663646 85663686 41 GTGGACAGACACAGCGGCAGCCGGGAACTCACCTGCCTGCT GTGGACAGACACAGCGGCAGCCGGCAACTCACCTGCCTGCT < 41bp 0.707797336074318 0.384518092153733 0.9197601 0.9010701 prediction 0.415594672148635 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85663666 chr2:85663670 nonsynonymous SNV 0.796 0 25 hm5C_associated_SNPs_91754 0 0 0 5 2 SH2D6 chr2:85663717 5'GT 85663717 Upstream 48bp
chr1 50659496 50659496 1 + C T GBM 50659493 + 50659473 50659513 41 GATGCTAACCTCTATGTTAGCGGCCTTCCCAAAACCATGAC GATGCTAACCTCTATGTTAGCGGTCTTCCCAAAACCATGAC < 41bp 0.707793369674244 0.499814588015911 0.41594064 0.25829935 prediction 0.415586739348488 Functional Loss - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50659493 chr1:50659496 synonymous SNV . 0 24 hm5C_associated_SNPs_91756 0 0 0 0 2 ELAVL4 chr1:50659437 3'AG 50659437 Downstream 60bp
chr1 50659496 50659496 1 + C T GBM 50659493 + 50659473 50659513 41 GATGCTAACCTCTATGTTAGCGGCCTTCCCAAAACCATGAC GATGCTAACCTCTATGTTAGCGGTCTTCCCAAAACCATGAC < 41bp 0.707793369674244 0.499814588015911 0.41594064 0.25829935 prediction 0.415586739348488 Functional Loss - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50659493 chr1:50659496 synonymous SNV . 0 24 hm5C_associated_SNPs_91756 0 0 0 0 2 ELAVL4 chr1:50659590 5'GT 50659590 Upstream 95bp
chrX 106882636 106882636 1 + G A SKCM 106882633 + 106882613 106882653 41 TTGATCATGATTAATGCCTGCAAGATTGCTTCAGCCAGCCG TTGATCATGATTAATGCCTGCAAAATTGCTTCAGCCAGCCG < 41bp 0.707790575626719 0.470729450596303 0.14310381 0.10083181 prediction 0.415581151253437 Functional Loss - PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106882633 chrX:106882636 synonymous SNV . 0 24 hm5C_associated_SNPs_91757 0 0 1 0 1 PRPS1 chrX:106882708 5'GT 106882708 Upstream 73bp
chr11 55655667 55655667 1 + A C LUAD 55655666 + 55655646 55655686 41 AAAGCCAGAATGGAACATTCCAGGGAGCTTTTAAGAGGAAT AAAGCCAGAATGGAACATTCCCGGGAGCTTTTAAGAGGAAT < 41bp 0.707789290290521 0.438685972034038 0.7883519 0.720917 prediction 0.415578580581041 Functional Loss - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55655666 chr11:55655667 synonymous SNV . 0 22 hm5C_associated_SNPs_91759 0 0 0 0 1 TRIM51 chr11:55655738 5'GT 55655738 Upstream 72bp
chr4 48990562 48990562 1 + G A SKCM 48990559 + 48990539 48990579 41 ATTACTTTCCTTTGCAAACACTAGAACTCACTGGGCTTGAA ATTACTTTCCTTTGCAAACACTAAAACTCACTGGGCTTGAA < 41bp 0.707785194651687 0.479334586069373 0.08189109 0.084364295 prediction 0.415570389303374 Functional Loss - CWH43 ENSG00000109182 CDS Human protein_coding chr4:48990559 chr4:48990562 nonsynonymous SNV 0.043 0 24 hm5C_associated_SNPs_91760 0 0 0 0 1 CWH43 chr4:48990494 3'AG 48990494 Downstream 69bp
chr11 65827296 65827296 1 + C T ESCA 65827293 + 65827273 65827313 41 CGTGGAGATGCACGATGTGACAGCGCAGGACCCTAAGCTCT CGTGGAGATGCACGATGTGACAGTGCAGGACCCTAAGCTCT < 41bp 0.707782785470346 0.491903435154464 0.29797292 0.22932342 prediction 0.415565570940692 Functional Loss - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827293 chr11:65827296 nonsynonymous SNV 0.902 3 24 hm5C_associated_SNPs_91761 0 0 1 0 1 SF3B2 chr11:65827253 3'AG 65827253 Downstream 44bp
chr10 135051582 135051582 1 + G A rs532294226 135051579 + 135051559 135051599 41 CCCAGGCCAGACATCCGGCGCCCGGGAGCCCCCTCAGGCCG CCCAGGCCAGACATCCGGCGCCCAGGAGCCCCCTCAGGCCG < 41bp 0.707781486151457 0.448306957433286 0.25332588 0.073970854 prediction 0.415562972302915 Functional Loss - VENTX ENSG00000151650 CDS Human protein_coding chr10:135051579 chr10:135051582 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_91762 0 0 0 0 1 VENTX chr10:135051659 5'GT 135051659 Upstream 78bp
chr14 101200729 101200729 1 + G A GBM 101200726 + 101200706 101200746 41 GTGACCAACTGCGCCAGCAGCCCGTGCCAGAACGGGGGCAC GTGACCAACTGCGCCAGCAGCCCATGCCAGAACGGGGGCAC < 41bp 0.707780051838696 0.455053750566847 0.5861812 0.40061966 prediction 0.415560103677391 Functional Loss - DLK1 ENSG00000185559 CDS Human protein_coding chr14:101200726 chr14:101200729 synonymous SNV . 0 24 hm5C_associated_SNPs_91765 0 0 1 0 1 DLK1 chr14:101200765 5'GT 101200765 Upstream 37bp
chr14 101200728 101200728 1 + C T SKCM 101200726 + 101200706 101200746 41 GTGACCAACTGCGCCAGCAGCCCGTGCCAGAACGGGGGCAC GTGACCAACTGCGCCAGCAGCCTGTGCCAGAACGGGGGCAC < 41bp 0.707780051838696 0.449848099114716 0.5861812 0.5456585 prediction 0.415560103677391 Functional Loss - DLK1 ENSG00000185559 CDS Human protein_coding chr14:101200726 chr14:101200728 nonsynonymous SNV 0.166 4 23 hm5C_associated_SNPs_91766 0 0 1 0 1 DLK1 chr14:101200765 5'GT 101200765 Upstream 38bp
chr6 44320592 44320592 1 + G T SARC 44320589 + 44320569 44320609 41 CAGTGAGCCTCCTGGCCTCCCCAGAGTGTCTGCTTACGTAG CAGTGAGCCTCCTGGCCTCCCCATAGTGTCTGCTTACGTAG < 41bp 0.707779891925612 0.307811246046662 0.043073535 0.04359424 prediction 0.415559783851225 Functional Loss - SPATS1 ENSG00000249481 CDS Human protein_coding chr6:44320589 chr6:44320592 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_91767 0 0 1 0 1 SPATS1 chr6:44320495 3'AG 44320495 Downstream 98bp
chr3 191093368 191093368 1 + C T LUSC 191093366 + 191093346 191093386 41 AGAGTGAGGAGCAGCTCCACCTCCATGACGCAGGTAATAGA AGAGTGAGGAGCAGCTCCACCTTCATGACGCAGGTAATAGA < 41bp 0.707777949601885 0.412471650048572 0.96532524 0.13014412 prediction 0.415555899203769 Functional Loss - CCDC50 ENSG00000152492 CDS Human protein_coding chr3:191093366 chr3:191093368 synonymous SNV . 0 23 hm5C_associated_SNPs_91768 0 0 0 0 1 CCDC50 chr3:191093378 5'GT 191093378 Upstream 11bp
chr14 58680398 58680398 1 + G C KIRP 58680394 + 58680374 58680414 41 ATTGTTGGGGAGCACTACCCCTAGGAGGAAAAGCTCTTCAC ATTGTTGGGGAGCACTACCCCTAGCAGGAAAAGCTCTTCAC < 41bp 0.713814075987778 0.506043314656181 0.05882585 0.06273037 prediction 0.415541522663193 Functional Loss - ACTR10 ENSG00000131966 CDS Human protein_coding chr14:58680394 chr14:58680398 nonsynonymous SNV 0.982 2 25 hm5C_associated_SNPs_91772 0 0 0 0 1 ACTR10 chr14:58680416 5'GT 58680416 Upstream 19bp
chr1 24673976 24673976 1 + G T COAD 24673972 + 24673952 24673992 41 TTTCAGTTCTGCTGTATGTGCGGAGGGAGACTGAGGAGGTG TTTCAGTTCTGCTGTATGTGCGGATGGAGACTGAGGAGGTG < 41bp 0.719118675538851 0.511348900348676 0.8626975 0.41551805 prediction 0.415539550380349 Functional Loss - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24673972 chr1:24673976 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_91774 0 0 0 0 2 GRHL3 chr1:24673958 3'AG 24673958 Downstream 19bp
chr1 24673976 24673976 1 + G T COAD 24673972 + 24673952 24673992 41 TTTCAGTTCTGCTGTATGTGCGGAGGGAGACTGAGGAGGTG TTTCAGTTCTGCTGTATGTGCGGATGGAGACTGAGGAGGTG < 41bp 0.719118675538851 0.511348900348676 0.8626975 0.41551805 prediction 0.415539550380349 Functional Loss - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24673972 chr1:24673976 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_91774 0 0 0 0 2 GRHL3 chr1:24674043 5'GT 24674043 Upstream 68bp
chrX 77155051 77155051 1 + A T LGG 77155047 + 77155027 77155067 41 CGCAGTTCTAGCTTCACCTTCACGATGTTTCCCTTGGTCAA CGCAGTTCTAGCTTCACCTTCACGTTGTTTCCCTTGGTCAA < 41bp 0.707765305843135 0.486268386957701 0.14156517 0.16082802 prediction 0.415530611686269 Functional Loss - COX7B ENSG00000131174 CDS Human protein_coding chrX:77155047 chrX:77155051 nonsynonymous SNV 0.698 2 25 hm5C_associated_SNPs_91778 0 0 1 0 1 COX7B chrX:77155090 5'GT 77155090 Upstream 40bp
chr17 12893402 12893402 1 + C T rs373321971 12893399 + 12893379 12893419 41 ACATAGAGCTCGGGTCGACGCTCCGCCTGAGTCCCCTGGAG ACATAGAGCTCGGGTCGACGCTCTGCCTGAGTCCCCTGGAG < 41bp 0.761141234699329 0.553377451532287 0.25724185 0.23405632 prediction 0.415527566334083 Functional Loss - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12893399 chr17:12893402 nonsynonymous SNV 0.928 2 24 hm5C_associated_SNPs_91780 0 0 0 0 1 ARHGAP44 chr17:12893349 3'AG 12893349 Downstream 54bp
chr20 33122512 33122512 1 + C T LUAD 33122510 + 33122490 33122530 41 GCACAGCTTCATCCTGAAGGCACGGAGCACCGTGCGTGACA GCACAGCTTCATCCTGAAGGCATGGAGCACCGTGCGTGACA < 41bp 0.816010723795012 0.608254553257342 0.16726997 0.11646408 prediction 0.415512341075339 Functional Loss - DYNLRB1 ENSG00000125971 CDS Human protein_coding chr20:33122510 chr20:33122512 nonsynonymous SNV 0.992 2 23 hm5C_associated_SNPs_91787 0 0 1 0 2 DYNLRB1 chr20:33122432 3'AG 33122432 Downstream 81bp
chr20 33122512 33122512 1 + C T LUAD 33122510 + 33122490 33122530 41 GCACAGCTTCATCCTGAAGGCACGGAGCACCGTGCGTGACA GCACAGCTTCATCCTGAAGGCATGGAGCACCGTGCGTGACA < 41bp 0.816010723795012 0.608254553257342 0.16726997 0.11646408 prediction 0.415512341075339 Functional Loss - DYNLRB1 ENSG00000125971 CDS Human protein_coding chr20:33122510 chr20:33122512 nonsynonymous SNV 0.992 2 23 hm5C_associated_SNPs_91787 0 0 1 0 2 DYNLRB1 chr20:33122599 5'GT 33122599 Upstream 88bp
chr6 26451989 26451989 1 + C T UCEC 26451987 + 26451967 26452007 41 TGTGCAGCGTGCTGAAGAGCCGCGGGATCTGCCAGACAACC TGTGCAGCGTGCTGAAGAGCCGTGGGATCTGCCAGACAACC < 41bp 0.836396894218246 0.628643533862409 0.7613513 0.59553856 prediction 0.415506720711673 Functional Loss - BTN3A3 ENSG00000111801 CDS Human protein_coding chr6:26451987 chr6:26451989 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_91790 0 0 0 0 1 BTN3A3 chr6:26451903 3'AG 26451903 Downstream 87bp
chr17 61560880 61560880 1 + G T COAD 61560877 + 61560857 61560897 41 AAACGAAACCCACTTTGATGCTGGAGCTAAGTTTCATGTTC AAACGAAACCCACTTTGATGCTGTAGCTAAGTTTCATGTTC < 41bp 0.707752499506192 0.322735513908222 0.14551121 0.026289433 prediction 0.415504999012384 Functional Loss - ACE ENSG00000159640 CDS Human protein_coding chr17:61560877 chr17:61560880 stopgain 0.997 4 24 hm5C_associated_SNPs_91791 0 0 0 0 1 ACE chr17:61560821 3'AG 61560821 Downstream 60bp
chr4 75482174 75482174 1 + C T COAD 75482172 + 75482152 75482192 41 CCTTCTAGTAGTGAACCGTCCTCGGGAGCCGACTATGACTA CCTTCTAGTAGTGAACCGTCCTTGGGAGCCGACTATGACTA < 41bp 0.849158240434948 0.641411307919067 0.08766705 0.072749734 prediction 0.415493865031761 Functional Loss - AREG ENSG00000205595 CDS Human other chr4:75482172 chr4:75482174 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_91794 0 0 0 0 1 AREG chr4:75482254 5'GT 75482254 Upstream 81bp
chr1 55509702 55509702 1 + G A UCEC 55509699 + 55509679 55509719 41 TGAAGATGAGTGGCGACCTGCTGGAGCTGGTGAGCCACCCT TGAAGATGAGTGGCGACCTGCTGAAGCTGGTGAGCCACCCT < 41bp 0.70774331450768 0.46146645433012 0.76995385 0.71860206 prediction 0.41548662901536 Functional Loss - PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55509699 chr1:55509702 nonsynonymous SNV 0.733 0 24 hm5C_associated_SNPs_91796 0 0 1 1 1 PCSK9 chr1:55509707 5'GT 55509707 Upstream 6bp
chr17 72351362 72351362 1 + G A SKCM 72351359 + 72351339 72351379 41 CCCTGGCTGTTCCCCCCAACCCAGGTGGTGGTTCTCGACGG CCCTGGCTGTTCCCCCCAACCCAAGTGGTGGTTCTCGACGG < 41bp 0.817483709957474 0.609740574485072 0.76841426 0.26266783 prediction 0.415486270944803 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72351359 chr17:72351362 nonsynonymous SNV 0.161 1 24 hm5C_associated_SNPs_91797 0 0 0 0 1 KIF19 chr17:72351321 3'AG 72351321 Downstream 42bp
chr16 230817 230817 1 + C T rs80294025 230815 + 230795 230835 41 GACCTACCCCACGCGCTGTCCGCGCTGAGCCACCTGCACGC GACCTACCCCACGCGCTGTCCGTGCTGAGCCACCTGCACGC < 41bp 0.795017717699505 0.587275805411793 0.51415896 0.3007458 prediction 0.415483824575425 Functional Loss - HBQ1 ENSG00000086506 CDS Human protein_coding chr16:230815 chr16:230817 nonsynonymous SNV 0.027 2 23 hm5C_associated_SNPs_91798 0 0 0 0 1 HBQ1 chr16:230869 5'GT 230869 Upstream 53bp
chr11 61507072 61507072 1 + C T BLCA 61507070 + 61507050 61507090 41 TATAGCCCTCTCAGCCAGCACTCCACTCTACCCGCCCGGCC TATAGCCCTCTCAGCCAGCACTTCACTCTACCCGCCCGGCC < 41bp 0.707739358783695 0.413382740143646 0.94360334 0.15803328 prediction 0.41547871756739 Functional Loss - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507070 chr11:61507072 nonsynonymous SNV 0.431 4 23 hm5C_associated_SNPs_91799 0 0 1 0 1 DAGLA chr11:61507133 5'GT 61507133 Upstream 62bp
chr22 40077016 40077016 1 + G A UCEC 40077013 + 40076993 40077033 41 TGCTGGGTGACGACCTGAGTCTCGAGGACCCCACAGCCTGC TGCTGGGTGACGACCTGAGTCTCAAGGACCCCACAGCCTGC < 41bp 0.804328290385815 0.596590260219035 0.16904396 0.12470952 prediction 0.41547606033356 Functional Loss - CACNA1I ENSG00000100346 CDS Human protein_coding chr22:40077013 chr22:40077016 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_91801 0 0 0 0 2 CACNA1I chr22:40076935 3'AG 40076935 Downstream 82bp
chr22 40077016 40077016 1 + G A UCEC 40077013 + 40076993 40077033 41 TGCTGGGTGACGACCTGAGTCTCGAGGACCCCACAGCCTGC TGCTGGGTGACGACCTGAGTCTCAAGGACCCCACAGCCTGC < 41bp 0.804328290385815 0.596590260219035 0.16904396 0.12470952 prediction 0.41547606033356 Functional Loss - CACNA1I ENSG00000100346 CDS Human protein_coding chr22:40077013 chr22:40077016 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_91801 0 0 0 0 2 CACNA1I chr22:40077057 5'GT 40077057 Upstream 42bp
chr15 65239791 65239791 1 + C T UCEC 65239788 + 65239768 65239808 41 GAGTTCACGGAGGCACATGTCGACGCCATCGAGCAACAGTG GAGTTCACGGAGGCACATGTCGATGCCATCGAGCAACAGTG < 41bp 0.723412817146897 0.515675045607523 0.7968531 0.33190173 prediction 0.415475543078747 Functional Loss - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65239788 chr15:65239791 synonymous SNV . 0 24 hm5C_associated_SNPs_91802 0 0 0 0 1 ANKDD1A chr15:65239813 5'GT 65239813 Upstream 23bp
chr2 209345847 209345847 1 + G T LUAD 209345845 + 209345825 209345865 41 AGAGTTCTAGCTACCAAAATCTGGGAGACCAATGCAGTTGG AGAGTTCTAGCTACCAAAATCTTGGAGACCAATGCAGTTGG < 41bp 0.707733155479678 0.370058151094135 0.8682484 0.16643822 prediction 0.415466310959355 Functional Loss - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209345845 chr2:209345847 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_91807 0 0 0 0 2 PTH2R chr2:209345795 3'AG 209345795 Downstream 53bp
chr2 209345847 209345847 1 + G T LUAD 209345845 + 209345825 209345865 41 AGAGTTCTAGCTACCAAAATCTGGGAGACCAATGCAGTTGG AGAGTTCTAGCTACCAAAATCTTGGAGACCAATGCAGTTGG < 41bp 0.707733155479678 0.370058151094135 0.8682484 0.16643822 prediction 0.415466310959355 Functional Loss - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209345845 chr2:209345847 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_91807 0 0 0 0 2 PTH2R chr2:209345889 5'GT 209345889 Upstream 43bp
chr17 47299525 47299525 1 + C T LUAD 47299522 + 47299502 47299542 41 TGGAGATGAATTGGGGCTGCCTCCACCCCCACCAGGATTTG TGGAGATGAATTGGGGCTGCCTCTACCCCCACCAGGATTTG < 41bp 0.70773260872669 0.481340018058291 0.9478487 0.8953512 prediction 0.41546521745338 Functional Loss - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47299522 chr17:47299525 nonsynonymous SNV 0.148 1 24 hm5C_associated_SNPs_91808 0 0 0 0 2 ABI3 chr17:47299453 3'AG 47299453 Downstream 73bp
chr17 47299525 47299525 1 + C T LUAD 47299522 + 47299502 47299542 41 TGGAGATGAATTGGGGCTGCCTCCACCCCCACCAGGATTTG TGGAGATGAATTGGGGCTGCCTCTACCCCCACCAGGATTTG < 41bp 0.70773260872669 0.481340018058291 0.9478487 0.8953512 prediction 0.41546521745338 Functional Loss - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47299522 chr17:47299525 nonsynonymous SNV 0.148 1 24 hm5C_associated_SNPs_91808 0 0 0 0 2 ABI3 chr17:47299587 5'GT 47299587 Upstream 63bp
chr2 71298877 71298877 1 + G T CESC 71298873 + 71298853 71298893 41 GGAGGATCCTGATCGAGGAGCTGAGGGACCGATTTCCCTAC GGAGGATCCTGATCGAGGAGCTGATGGACCGATTTCCCTAC < 41bp 0.707732264753027 0.495889263580746 0.75141156 0.6330803 prediction 0.415464529506053 Functional Loss - NAGK ENSG00000124357 CDS Human protein_coding chr2:71298873 chr2:71298877 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_91809 0 0 1 0 3 NAGK chr2:71298816 3'AG 71298816 Downstream 62bp
chr2 71298877 71298877 1 + G T CESC 71298873 + 71298853 71298893 41 GGAGGATCCTGATCGAGGAGCTGAGGGACCGATTTCCCTAC GGAGGATCCTGATCGAGGAGCTGATGGACCGATTTCCCTAC < 41bp 0.707732264753027 0.495889263580746 0.75141156 0.6330803 prediction 0.415464529506053 Functional Loss - NAGK ENSG00000124357 CDS Human protein_coding chr2:71298873 chr2:71298877 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_91809 0 0 1 0 3 NAGK chr2:71298957 5'GT 71298957 Upstream 81bp
chr2 71298877 71298877 1 + G T CESC 71298873 + 71298853 71298893 41 GGAGGATCCTGATCGAGGAGCTGAGGGACCGATTTCCCTAC GGAGGATCCTGATCGAGGAGCTGATGGACCGATTTCCCTAC < 41bp 0.707732264753027 0.495889263580746 0.75141156 0.6330803 prediction 0.415464529506053 Functional Loss - NAGK ENSG00000124357 CDS Human protein_coding chr2:71298873 chr2:71298877 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_91809 0 0 1 0 3 NAGK chr2:71298965 5'GT 71298965 Upstream 89bp
chr3 50225195 50225195 1 + C T COAD 50225192 + 50225172 50225212 41 AGGGCTTGTTGCTCCGTGCACTGCAGCTCAGCGATCGTGGC AGGGCTTGTTGCTCCGTGCACTGTAGCTCAGCGATCGTGGC < 41bp 0.752395229560825 0.544666131159802 0.09462795 0.09235519 prediction 0.415458196802047 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50225192 chr3:50225195 stopgain 0.868 1 24 hm5C_associated_SNPs_91810 0 0 0 0 1 SEMA3F chr3:50225138 3'AG 50225138 Downstream 58bp
chr17 41020169 41020169 1 + G A SKCM 41020166 + 41020146 41020186 41 TGGTGAATGTGGTGCTGATCCCAGACAATGGCACAGGTGGG TGGTGAATGTGGTGCTGATCCCAAACAATGGCACAGGTGGG < 41bp 0.803015440432192 0.59528761172352 0.3992056 0.3546595 prediction 0.415455657417344 Functional Loss - AOC4P ENSG00000260105 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:41020166 chr17:41020169 . . 0 24 hm5C_associated_SNPs_91811 0 0 0 0 1 AOC4P chr17:41020181 5'GT 41020181 Upstream 13bp
chr2 111921749 111921749 1 + C T UCEC 111921747 + 111921727 111921767 41 CCAAGCAGCCGAAGACCACCCACGAATGGTTATCTTACGAC CCAAGCAGCCGAAGACCACCCATGAATGGTTATCTTACGAC < 41bp 0.818861676833757 0.611134482979825 0.2600695 0.39760157 prediction 0.415454387707864 Functional Loss - BCL2L11 ENSG00000153094 CDS Human protein_coding chr2:111921747 chr2:111921749 stopgain 0.962 0 23 hm5C_associated_SNPs_91812 0 0 1 1 1 BCL2L11 chr2:111921710 3'AG 111921710 Downstream 40bp
chr20 25187951 25187951 1 + C T UCEC 25187949 + 25187929 25187969 41 TGGGGACAGCTGCAGACGGGCACGAGGTCTTCTACGGGATC TGGGGACAGCTGCAGACGGGCATGAGGTCTTCTACGGGATC < 41bp 0.810859239422403 0.603134383327749 0.44462886 0.55409044 prediction 0.415449712189307 Functional Loss - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25187949 chr20:25187951 synonymous SNV . 0 23 hm5C_associated_SNPs_91813 0 0 0 0 1 ENTPD6 chr20:25188033 5'GT 25188033 Upstream 83bp
chr16 24902389 24902389 1 + G A LUSC 24902386 + 24902366 24902406 41 CCATCCCTCTGGTACTGGTGCACGGATCAGGTACAGGACAG CCATCCCTCTGGTACTGGTGCACAGATCAGGTACAGGACAG < 41bp 0.707724805867843 0.459969434562705 0.19571534 0.053681076 prediction 0.415449611735686 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24902386 chr16:24902389 synonymous SNV . 0 24 hm5C_associated_SNPs_91814 0 0 0 0 1 SLC5A11 chr16:24902395 5'GT 24902395 Upstream 7bp
chr16 24902388 24902388 1 + C T UCEC 24902386 + 24902366 24902406 41 CCATCCCTCTGGTACTGGTGCACGGATCAGGTACAGGACAG CCATCCCTCTGGTACTGGTGCATGGATCAGGTACAGGACAG < 41bp 0.707724805867843 0.449507223434937 0.19571534 0.14482853 prediction 0.415449611735686 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24902386 chr16:24902388 nonsynonymous SNV 0.992 5 23 hm5C_associated_SNPs_91815 0 0 0 0 1 SLC5A11 chr16:24902395 5'GT 24902395 Upstream 8bp
chr8 68956788 68956788 1 + G A GBM 68956785 + 68956765 68956805 41 CTTTTTCGTGGCCGGATCAACACGGAGGTGATGGAAGTGGA CTTTTTCGTGGCCGGATCAACACAGAGGTGATGGAAGTGGA < 41bp 0.707723004208125 0.4728071090514 0.6513168 0.33201933 prediction 0.415446008416251 Functional Loss - PREX2 ENSG00000046889 CDS Human protein_coding chr8:68956785 chr8:68956788 synonymous SNV . 0 24 hm5C_associated_SNPs_91816 0 0 0 0 2 PREX2 chr8:68956722 3'AG 68956722 Downstream 67bp
chr8 68956788 68956788 1 + G A GBM 68956785 + 68956765 68956805 41 CTTTTTCGTGGCCGGATCAACACGGAGGTGATGGAAGTGGA CTTTTTCGTGGCCGGATCAACACAGAGGTGATGGAAGTGGA < 41bp 0.707723004208125 0.4728071090514 0.6513168 0.33201933 prediction 0.415446008416251 Functional Loss - PREX2 ENSG00000046889 CDS Human protein_coding chr8:68956785 chr8:68956788 synonymous SNV . 0 24 hm5C_associated_SNPs_91816 0 0 0 0 2 PREX2 chr8:68956825 5'GT 68956825 Upstream 38bp
chrX 36007499 36007499 1 + C T SARC 36007496 + 36007476 36007516 41 TTGGCAGCAGGGCTTCAGTTCTCCAGAAGAAGGAGAATTTA TTGGCAGCAGGGCTTCAGTTCTCTAGAAGAAGGAGAATTTA < 41bp 0.787957797351573 0.580238309796459 0.9465547 0.9048092 prediction 0.415438975110229 Functional Loss - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:36007496 chrX:36007499 nonsynonymous SNV 0.434 3 24 hm5C_associated_SNPs_91818 0 0 0 2 1 CFAP47 chrX:36007436 3'AG 36007436 Downstream 64bp
chrX 149108899 149108899 1 + G A rs187028825 149108896 + 149108876 149108916 41 GGCAAGAGTCCAAACTTTCCCGCGGCGACCTAACTGCACCT GGCAAGAGTCCAAACTTTCCCGCAGCGACCTAACTGCACCT < 41bp 0.817685385931613 0.609966065642173 0.44731975 0.092430264 prediction 0.415438640578879 Functional Loss - LINC00894 ENSG00000235703 ncRNA_exonic Human antisense chrX:149108896 chrX:149108899 . . 0 24 hm5C_associated_SNPs_91819 0 0 1 0 1 LINC00894 chrX:149108877 3'AG 149108877 Downstream 23bp
chrX 12809685 12809685 1 + G A LUSC 12809682 + 12809662 12809702 41 TCCCAGCGCGTGGCCGACCGCCTGGGCCTGGAGCTGGGCAA TCCCAGCGCGTGGCCGACCGCCTAGGCCTGGAGCTGGGCAA < 41bp 0.805742307295036 0.59802439044251 0.4659465 0.22363502 prediction 0.415435833705051 Functional Loss - PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12809682 chrX:12809685 synonymous SNV . 0 24 hm5C_associated_SNPs_91820 0 0 1 0 1 PRPS2 chrX:12809738 5'GT 12809738 Upstream 54bp
chr1 19018270 19018270 1 + G A rs141048856 19018267 + 19018247 19018287 41 GGGAACCGGCTGGACGAGGGCTCGGATGTGGAGTCGGAACC GGGAACCGGCTGGACGAGGGCTCAGATGTGGAGTCGGAACC < 41bp 0.812012237468636 0.604294902916353 0.12857872 0.07346451 prediction 0.415434669104565 Functional Loss - PAX7 ENSG00000009709 CDS Human protein_coding chr1:19018267 chr1:19018270 synonymous SNV . 0 24 hm5C_associated_SNPs_91821 0 0 0 0 1 PAX7 chr1:19018248 3'AG 19018248 Downstream 23bp
chr4 86916767 86916767 1 + G A UCEC 86916764 + 86916744 86916784 41 GTTTAGTTTCCAGCCTGAAACAGGAAATGACCAAACAGAAG GTTTAGTTTCCAGCCTGAAACAGAAAATGACCAAACAGAAG < 41bp 0.707715347357114 0.489410986564662 0.3655684 0.1569486 prediction 0.415430694714229 Functional Loss - ARHGAP24 ENSG00000138639 CDS Human protein_coding chr4:86916764 chr4:86916767 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91822 0 0 0 0 1 ARHGAP24 chr4:86916810 5'GT 86916810 Upstream 44bp
chr1 29630422 29630422 1 + G A rs532193157 29630419 + 29630399 29630439 41 AGCAGCCTCCTGGGGGGCTCCCCGAGGCGTCCCTGTGGCCG AGCAGCCTCCTGGGGGGCTCCCCAAGGCGTCCCTGTGGCCG < 41bp 0.810642919861242 0.602930932090406 0.7954494 0.64422363 prediction 0.415423975541672 Functional Loss - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29630419 chr1:29630422 synonymous SNV . 0 24 hm5C_associated_SNPs_91824 0 0 1 0 1 PTPRU chr1:29630367 3'AG 29630367 Downstream 56bp
chr6 35260389 35260389 1 + G A BLCA 35260386 + 35260366 35260406 41 GGGAAACGCTTCACCGAGTACTCGAGCTTGTATAAGCACCA GGGAAACGCTTCACCGAGTACTCAAGCTTGTATAAGCACCA < 41bp 0.78809452923659 0.580383002083945 0.23484164 0.3247954 prediction 0.415423054305291 Functional Loss - ZNF76 ENSG00000065029 CDS Human protein_coding chr6:35260386 chr6:35260389 synonymous SNV . 0 24 hm5C_associated_SNPs_91826 0 0 1 0 1 ZNF76 chr6:35260331 3'AG 35260331 Downstream 59bp
chr17 18001619 18001619 1 + C T UCEC 18001616 + 18001596 18001636 41 AGTCTGATGACCTCCACGGCCAGCGAGGCAGCGTCCTATGA AGTCTGATGACCTCCACGGCCAGTGAGGCAGCGTCCTATGA < 41bp 0.707707807222178 0.489950723628537 0.273668 0.38103488 prediction 0.415415614444357 Functional Loss - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18001616 chr17:18001619 stopgain . 0 24 hm5C_associated_SNPs_91829 0 0 1 1 2 DRG2 chr17:18001584 3'AG 18001584 Downstream 36bp
chr17 18001619 18001619 1 + C T UCEC 18001616 + 18001596 18001636 41 AGTCTGATGACCTCCACGGCCAGCGAGGCAGCGTCCTATGA AGTCTGATGACCTCCACGGCCAGTGAGGCAGCGTCCTATGA < 41bp 0.707707807222178 0.489950723628537 0.273668 0.38103488 prediction 0.415415614444357 Functional Loss - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18001616 chr17:18001619 stopgain . 0 24 hm5C_associated_SNPs_91829 0 0 1 1 2 DRG2 chr17:18001673 5'GT 18001673 Upstream 55bp
chr1 17668839 17668839 1 + G A UCEC 17668836 + 17668816 17668856 41 TCCAAGACAGCGTGGTCTTCCGCGTGGCGCCCTGGATCATG TCCAAGACAGCGTGGTCTTCCGCATGGCGCCCTGGATCATG < 41bp 0.821671447693478 0.613966398759709 0.08066112 0.024070859 prediction 0.415410097867537 Functional Loss - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17668836 chr1:17668839 nonsynonymous SNV 0.989 3 24 hm5C_associated_SNPs_91831 0 0 0 0 2 PADI4 chr1:17668794 3'AG 17668794 Downstream 46bp
chr1 17668839 17668839 1 + G A UCEC 17668836 + 17668816 17668856 41 TCCAAGACAGCGTGGTCTTCCGCGTGGCGCCCTGGATCATG TCCAAGACAGCGTGGTCTTCCGCATGGCGCCCTGGATCATG < 41bp 0.821671447693478 0.613966398759709 0.08066112 0.024070859 prediction 0.415410097867537 Functional Loss - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17668836 chr1:17668839 nonsynonymous SNV 0.989 3 24 hm5C_associated_SNPs_91831 0 0 0 0 2 PADI4 chr1:17668897 5'GT 17668897 Upstream 59bp
chr1 55527225 55527225 1 + A T OV 55527221 + 55527201 55527241 41 AGCATGGAATCCCGGCCCCTCAGGAGCAGGTGAAGAGGCCC AGCATGGAATCCCGGCCCCTCAGGTGCAGGTGAAGAGGCCC < 41bp 0.887793959371262 0.680092419182056 0.9009354 0.8876148 prediction 0.415403080378412 Functional Loss - PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55527221 chr1:55527225 nonsynonymous SNV 0.037 0 25 hm5C_associated_SNPs_91833 0 0 1 0 1 PCSK9 chr1:55527229 5'GT 55527229 Upstream 5bp
chr10 89487100 89487100 1 + C T UCEC 89487098 + 89487078 89487118 41 CGTCTCTGCAGAGGATAAGACACGGCTGGAAGGGTGCAGCA CGTCTCTGCAGAGGATAAGACATGGCTGGAAGGGTGCAGCA < 41bp 0.863468072280902 0.655767417054363 0.8390894 0.6708367 prediction 0.415401310453078 Functional Loss - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89487098 chr10:89487100 nonsynonymous SNV 0.904 3 23 hm5C_associated_SNPs_91834 0 0 0 1 1 PAPSS2 chr10:89487041 3'AG 89487041 Downstream 60bp
chr1 182835662 182835662 1 + C T rs142698184 182835659 + 182835639 182835679 41 CCTGGAAAAAGCTGTGGCTACAGCGTTCGATTTGAGTCTAT CCTGGAAAAAGCTGTGGCTACAGTGTTCGATTTGAGTCTAT < 41bp 0.728588186532128 0.520887956585943 0.18424931 0.16255441 prediction 0.415400459892369 Functional Loss - DHX9 ENSG00000135829 CDS Human protein_coding chr1:182835659 chr1:182835662 synonymous SNV . 0 24 hm5C_associated_SNPs_91836 0 0 1 0 2 DHX9 chr1:182835579 3'AG 182835579 Downstream 84bp
chr1 182835662 182835662 1 + C T rs142698184 182835659 + 182835639 182835679 41 CCTGGAAAAAGCTGTGGCTACAGCGTTCGATTTGAGTCTAT CCTGGAAAAAGCTGTGGCTACAGTGTTCGATTTGAGTCTAT < 41bp 0.728588186532128 0.520887956585943 0.18424931 0.16255441 prediction 0.415400459892369 Functional Loss - DHX9 ENSG00000135829 CDS Human protein_coding chr1:182835659 chr1:182835662 synonymous SNV . 0 24 hm5C_associated_SNPs_91836 0 0 1 0 2 DHX9 chr1:182835720 5'GT 182835720 Upstream 59bp
chr12 112884133 112884133 1 + G A BLCA 112884130 + 112884110 112884150 41 GGCAGAAAACCTACTGTTGACAAGAGGAGTTGATGGCAGTT GGCAGAAAACCTACTGTTGACAAAAGGAGTTGATGGCAGTT < 41bp 0.783827134876378 0.576130003528582 0.8522463 0.7842692 prediction 0.415394262695592 Functional Loss - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112884130 chr12:112884133 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_91838 0 0 0 0 2 PTPN11 chr12:112884080 3'AG 112884080 Downstream 54bp
chr12 112884133 112884133 1 + G A BLCA 112884130 + 112884110 112884150 41 GGCAGAAAACCTACTGTTGACAAGAGGAGTTGATGGCAGTT GGCAGAAAACCTACTGTTGACAAAAGGAGTTGATGGCAGTT < 41bp 0.783827134876378 0.576130003528582 0.8522463 0.7842692 prediction 0.415394262695592 Functional Loss - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112884130 chr12:112884133 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_91838 0 0 0 0 2 PTPN11 chr12:112884202 5'GT 112884202 Upstream 70bp
chr2 223559116 223559116 1 + A C rs80203979 223559112 + 223559092 223559132 41 GTTTCCAAGAAAAGTGTGTCCTACATGGTAAGCAAGGAGGG GTTTCCAAGAAAAGTGTGTCCTACCTGGTAAGCAAGGAGGG < 41bp 0.707693401016525 0.282326551589897 0.6481971 0.10447577 prediction 0.41538680203305 Functional Loss - MOGAT1 ENSG00000124003 CDS Human protein_coding chr2:223559112 chr2:223559116 nonsynonymous SNV 0.043 0 25 hm5C_associated_SNPs_91843 0 0 0 0 1 MOGAT1 chr2:223559081 3'AG 223559081 Downstream 36bp
chr16 87435864 87435864 1 + G A BLCA 87435861 + 87435841 87435881 41 CTTGTACCTGACCATGTCAACATGAGTGAGCTCATCAAGAT CTTGTACCTGACCATGTCAACATAAGTGAGCTCATCAAGAT < 41bp 0.766752976314539 0.559061030397167 0.35156494 0.31676608 prediction 0.415383891834743 Functional Loss - MAP1LC3B ENSG00000140941 CDS Human protein_coding chr16:87435861 chr16:87435864 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_91845 0 0 0 0 2 MAP1LC3B chr16:87435781 3'AG 87435781 Downstream 84bp
chr16 87435864 87435864 1 + G A BLCA 87435861 + 87435841 87435881 41 CTTGTACCTGACCATGTCAACATGAGTGAGCTCATCAAGAT CTTGTACCTGACCATGTCAACATAAGTGAGCTCATCAAGAT < 41bp 0.766752976314539 0.559061030397167 0.35156494 0.31676608 prediction 0.415383891834743 Functional Loss - MAP1LC3B ENSG00000140941 CDS Human protein_coding chr16:87435861 chr16:87435864 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_91845 0 0 0 0 2 MAP1LC3B chr16:87435887 5'GT 87435887 Upstream 24bp
chr9 130473570 130473570 1 + C T COAD 130473568 + 130473548 130473588 41 AATGAGTTCCACAAGGTGACCACGAACCGGATGTGGGAGAC AATGAGTTCCACAAGGTGACCATGAACCGGATGTGGGAGAC < 41bp 0.865491081374728 0.657799978904051 0.116439015 0.0752438 prediction 0.415382204941355 Functional Loss - CFAP157 ENSG00000160401 CDS Human protein_coding chr9:130473568 chr9:130473570 nonsynonymous SNV 0.354 0 23 hm5C_associated_SNPs_91847 0 0 0 0 1 CFAP157 chr9:130473508 3'AG 130473508 Downstream 63bp
chr17 21204240 21204240 1 + G A SKCM 21204237 + 21204217 21204257 41 AGAAGCGGCTGCTCATGGACCTGGACATCAACATGCGCACG AGAAGCGGCTGCTCATGGACCTGAACATCAACATGCGCACG < 41bp 0.825163162134393 0.617473843547081 0.0774003 0.056545854 prediction 0.415378637174625 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21204237 chr17:21204240 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_91850 0 0 1 0 2 MAP2K3 chr17:21204186 3'AG 21204186 Downstream 55bp
chr17 21204240 21204240 1 + G A SKCM 21204237 + 21204217 21204257 41 AGAAGCGGCTGCTCATGGACCTGGACATCAACATGCGCACG AGAAGCGGCTGCTCATGGACCTGAACATCAACATGCGCACG < 41bp 0.825163162134393 0.617473843547081 0.0774003 0.056545854 prediction 0.415378637174625 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21204237 chr17:21204240 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_91850 0 0 1 0 2 MAP2K3 chr17:21204305 5'GT 21204305 Upstream 66bp
chr9 131002051 131002051 1 + G A COAD 131002048 + 131002028 131002068 41 GATGAACAAGAAGAAGACTTCAGGGAACCAGGTGAGTGGGG GATGAACAAGAAGAAGACTTCAGAGAACCAGGTGAGTGGGG < 41bp 0.799050589443421 0.591366172397034 0.92604935 0.9163154 prediction 0.415368834092775 Functional Loss - DNM1 ENSG00000106976 CDS Human protein_coding chr9:131002048 chr9:131002051 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_91854 0 0 1 0 1 DNM1 chr9:131002007 3'AG 131002007 Downstream 45bp
chr17 36912143 36912143 1 + C T STAD 36912140 + 36912120 36912160 41 TTTTCTCCTACCTCAGTGCCCAGCGCCTCAAGTTCCGGCTG TTTTCTCCTACCTCAGTGCCCAGTGCCTCAAGTTCCGGCTG < 41bp 0.727000556006552 0.519316757858344 0.47336993 0.45886064 prediction 0.415367596296416 Functional Loss - PSMB3 ENSG00000108294 CDS Human other chr17:36912140 chr17:36912143 nonsynonymous SNV 0.994 0 24 hm5C_associated_SNPs_91855 0 0 1 0 1 PSMB3 chr17:36912136 3'AG 36912136 Downstream 8bp
chr19 50215092 50215092 1 + C T rs578014751 50215090 + 50215070 50215110 41 CACAGTGCCTCGCCCTGTTCCGCGTGGCAGTGGACAAGCAC CACAGTGCCTCGCCCTGTTCCGTGTGGCAGTGGACAAGCAC < 41bp 0.707682758230338 0.475956759548654 0.49775192 0.49462587 prediction 0.415365516460677 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50215090 chr19:50215092 synonymous SNV . 0 23 hm5C_associated_SNPs_91856 0 0 0 0 1 CPT1C chr19:50215066 3'AG 50215066 Downstream 27bp
chr3 128979519 128979519 1 + G A BLCA 128979516 + 128979496 128979536 41 GTAATCTGGATCTGGAGAACCTGGTCACAGATTCAAACCGC GTAATCTGGATCTGGAGAACCTGATCACAGATTCAAACCGC < 41bp 0.70767874861915 0.465741679409558 0.070565194 0.08007875 prediction 0.415357497238301 Functional Loss - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128979516 chr3:128979519 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_91861 0 0 1 0 1 COPG1 chr3:128979462 3'AG 128979462 Downstream 58bp
chr11 108175517 108175517 1 + C T LUSC 108175515 + 108175495 108175535 41 ACACATGTTCAGGGATTTTTCACCAGCTGTCTTCGACACTT ACACATGTTCAGGGATTTTTCATCAGCTGTCTTCGACACTT < 41bp 0.707677792372529 0.442606570202981 0.17390949 0.1191065 prediction 0.415355584745059 Functional Loss - ATM ENSG00000149311 CDS Human protein_coding chr11:108175515 chr11:108175517 nonsynonymous SNV 0.868 2 23 hm5C_associated_SNPs_91862 3 0 1 0 1 ATM chr11:108175579 5'GT 108175579 Upstream 63bp
chr1 171755182 171755182 1 + G A rs2232819 171755179 + 171755159 171755199 41 GCTGAGCTGTCGGCTAGAGTCATGGAGCTGGCCCCAGCTGG GCTGAGCTGTCGGCTAGAGTCATAGAGCTGGCCCCAGCTGG < 41bp 0.824824017805296 0.61714656939893 0.56606084 0.39431614 prediction 0.415354896812733 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171755179 chr1:171755182 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_91863 0 0 1 0 1 METTL13 chr1:171755218 5'GT 171755218 Upstream 37bp
chr16 68845760 68845760 1 + G A STAD 68845757 + 68845737 68845777 41 TGGTCACCACTGGGCTGGACCGAGAGGTCAGGGGTCAGGAG TGGTCACCACTGGGCTGGACCGAAAGGTCAGGGGTCAGGAG < 41bp 0.826415278132983 0.618737853468626 0.91051537 0.35454357 prediction 0.415354849328713 Functional Loss - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68845757 chr16:68845760 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91864 0 0 0 0 1 CDH1 chr16:68845762 5'GT 68845762 Upstream 3bp
chr4 83996502 83996502 1 + A T LUAD 83996500 + 83996480 83996520 41 AGATCCAATCACTTTGTTTCCAAGTGAATAACCTTTTGGAG AGATCCAATCACTTTGTTTCCATGTGAATAACCTTTTGGAG < 41bp 0.718311956710441 0.510639040700359 0.8967538 0.64649117 prediction 0.415345832020163 Functional Loss - COPS4 ENSG00000138663 CDS Human protein_coding chr4:83996500 chr4:83996502 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_91866 0 0 1 1 1 COPS4 chr4:83996450 3'AG 83996450 Downstream 53bp
chr19 11144852 11144852 1 + C T rs148495641 11144850 + 11144830 11144870 41 TCAACCAGATGATCGCCCGGCACGAGGAGGAGTTTGATCTG TCAACCAGATGATCGCCCGGCATGAGGAGGAGTTTGATCTG < 41bp 0.707670718533531 0.435428599717437 0.35315323 0.41465437 prediction 0.415341437067063 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11144850 chr19:11144852 synonymous SNV . 0 23 hm5C_associated_SNPs_91868 1 0 1 0 2 SMARCA4 chr19:11144799 3'AG 11144799 Downstream 54bp
chr19 11144852 11144852 1 + C T rs148495641 11144850 + 11144830 11144870 41 TCAACCAGATGATCGCCCGGCACGAGGAGGAGTTTGATCTG TCAACCAGATGATCGCCCGGCATGAGGAGGAGTTTGATCTG < 41bp 0.707670718533531 0.435428599717437 0.35315323 0.41465437 prediction 0.415341437067063 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11144850 chr19:11144852 synonymous SNV . 0 23 hm5C_associated_SNPs_91868 1 0 1 0 2 SMARCA4 chr19:11144876 5'GT 11144876 Upstream 25bp
chr19 11144853 11144853 1 + G A GBM 11144850 + 11144830 11144870 41 TCAACCAGATGATCGCCCGGCACGAGGAGGAGTTTGATCTG TCAACCAGATGATCGCCCGGCACAAGGAGGAGTTTGATCTG < 41bp 0.707670718533531 0.475186469947442 0.35315323 0.46182817 prediction 0.415341437067063 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11144850 chr19:11144853 nonsynonymous SNV 0.986 4 24 hm5C_associated_SNPs_91869 0 0 1 0 2 SMARCA4 chr19:11144799 3'AG 11144799 Downstream 55bp
chr19 11144853 11144853 1 + G A GBM 11144850 + 11144830 11144870 41 TCAACCAGATGATCGCCCGGCACGAGGAGGAGTTTGATCTG TCAACCAGATGATCGCCCGGCACAAGGAGGAGTTTGATCTG < 41bp 0.707670718533531 0.475186469947442 0.35315323 0.46182817 prediction 0.415341437067063 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11144850 chr19:11144853 nonsynonymous SNV 0.986 4 24 hm5C_associated_SNPs_91869 0 0 1 0 2 SMARCA4 chr19:11144876 5'GT 11144876 Upstream 24bp
chrX 122528965 122528965 1 + G T UCEC 122528962 + 122528942 122528982 41 GAAAGGGAATTCCCTGAAGCCAAGAATGCACCACTAAAGGT GAAAGGGAATTCCCTGAAGCCAATAATGCACCACTAAAGGT < 41bp 0.707670013486153 0.335249583210065 0.14163437 0.28140944 prediction 0.415340026972307 Functional Loss - GRIA3 ENSG00000125675 CDS Human protein_coding chrX:122528962 chrX:122528965 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_91872 0 0 0 0 1 GRIA3 chrX:122528980 5'GT 122528980 Upstream 16bp
chr6 31555086 31555086 1 + C T UCEC 31555084 + 31555064 31555104 41 GATCCCTGACCTAATGTTATCGCGGAATGATGGTAAGTAAA GATCCCTGACCTAATGTTATCGTGGAATGATGGTAAGTAAA < 41bp 0.717127484479912 0.509459322234777 0.70268977 0.42611384 prediction 0.415336324490269 Functional Loss - LST1 ENSG00000204482 CDS Human protein_coding chr6:31555084 chr6:31555086 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_91874 0 0 0 2 1 LST1 chr6:31555095 5'GT 31555095 Upstream 10bp
chr17 18918472 18918472 1 + C T UCEC 18918469 + 18918449 18918489 41 CTATGGACATCTGGAGGCGGCTGCGTCCCCGCTCCGGCGAG CTATGGACATCTGGAGGCGGCTGTGTCCCCGCTCCGGCGAG < 41bp 0.712495707964253 0.504828878336651 0.5490902 0.3083372 prediction 0.415333659255205 Functional Loss - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18918469 chr17:18918472 nonsynonymous SNV 0.885 4 24 hm5C_associated_SNPs_91876 0 0 0 0 1 SLC5A10 chr17:18918512 5'GT 18918512 Upstream 41bp
chr16 88871992 88871992 1 + C T COAD 88871989 + 88871969 88872009 41 GTGGGCATGCTCCACAACCGCTCCGAGACGCCCACCTTTGC GTGGGCATGCTCCACAACCGCTCTGAGACGCCCACCTTTGC < 41bp 0.739905714254379 0.532245482488981 0.11742103 0.19882303 prediction 0.415320463530796 Functional Loss - CDT1 ENSG00000167513 CDS Human protein_coding chr16:88871989 chr16:88871992 synonymous SNV . 0 24 hm5C_associated_SNPs_91881 0 0 1 0 1 CDT1 chr16:88872045 5'GT 88872045 Upstream 54bp
chrX 79278611 79278611 1 + C T UCEC 79278608 + 79278588 79278628 41 TCTGCTTCCTCTGGCTGCGGCAGCGACAGCGGCTACGGCAA TCTGCTTCCTCTGGCTGCGGCAGTGACAGCGGCTACGGCAA < 41bp 0.737603550231421 0.529951621199956 0.32447112 0.21694067 prediction 0.41530385806293 Functional Loss - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79278608 chrX:79278611 synonymous SNV . 0 24 hm5C_associated_SNPs_91887 0 0 0 0 1 TBX22 chrX:79278559 3'AG 79278559 Downstream 53bp
chr13 113960824 113960824 1 + C T LGG 113960821 + 113960801 113960841 41 CCTCATGCATTGTGCGTCAGCAGCAATGTTTATGGTGAAAA CCTCATGCATTGTGCGTCAGCAGTAATGTTTATGGTGAAAA < 41bp 0.752171932546269 0.544520969756429 0.15560299 0.13730201 prediction 0.415301925579681 Functional Loss - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113960821 chr13:113960824 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_91888 0 0 1 0 2 LAMP1 chr13:113960800 3'AG 113960800 Downstream 25bp
chr13 113960824 113960824 1 + C T LGG 113960821 + 113960801 113960841 41 CCTCATGCATTGTGCGTCAGCAGCAATGTTTATGGTGAAAA CCTCATGCATTGTGCGTCAGCAGTAATGTTTATGGTGAAAA < 41bp 0.752171932546269 0.544520969756429 0.15560299 0.13730201 prediction 0.415301925579681 Functional Loss - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113960821 chr13:113960824 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_91888 0 0 1 0 2 LAMP1 chr13:113960921 5'GT 113960921 Upstream 98bp
chr6 30114834 30114834 1 + G A STAD 30114831 + 30114811 30114851 41 AGCACCAAACCAGGGAACAGCTGGGTGCCCTCCCTCAGCAG AGCACCAAACCAGGGAACAGCTGAGTGCCCTCCCTCAGCAG < 41bp 0.75321790419802 0.545567057489602 0.9196046 0.8841213 prediction 0.415301693416835 Functional Loss - TRIM40 ENSG00000204614 CDS Human protein_coding chr6:30114831 chr6:30114834 nonsynonymous SNV 0.069 0 24 hm5C_associated_SNPs_91889 0 0 0 0 1 TRIM40 chr6:30114762 3'AG 30114762 Downstream 73bp
chr11 1157911 1157911 1 + G T THCA 1157909 + 1157889 1157929 41 CCCATGCAGGGGGGTTGCCCCAGGACTGGCGGGGCCCTGAC CCCATGCAGGGGGGTTGCCCCATGACTGGCGGGGCCCTGAC < 41bp 0.707644589321662 0.377778841620645 0.91537786 0.82894003 prediction 0.415289178643325 Functional Loss - MUC5AC ENSG00000215182 CDS Human protein_coding chr11:1157909 chr11:1157911 nonsynonymous SNV 0.982 1 23 hm5C_associated_SNPs_91891 0 0 0 0 1 MUC5AC chr11:1157936 5'GT 1157936 Upstream 26bp
chr1 22927919 22927919 1 + T C UCEC 22927918 + 22927898 22927938 41 CCGGTACCGAGACCACTTCGCTGCGGGCGGATACTCCTCTC CCGGTACCGAGACCACTTCGCCGCGGGCGGATACTCCTCTC < 41bp 0.812664088262989 0.605027223391611 0.8562173 0.92255497 prediction 0.415273729742757 Functional Loss - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22927918 chr1:22927919 synonymous SNV . 0 22 hm5C_associated_SNPs_91896 0 0 0 0 1 EPHA8 chr1:22927966 5'GT 22927966 Upstream 48bp
chr8 35606100 35606100 1 + C T LUSC 35606098 + 35606078 35606118 41 TCCTGAAGTCACCTGTGGTCCTCCAGACATGATCGTCACCA TCCTGAAGTCACCTGTGGTCCTTCAGACATGATCGTCACCA < 41bp 0.707635897164104 0.402684521126409 0.9465201 0.12936983 prediction 0.415271794328209 Functional Loss - UNC5D ENSG00000156687 CDS Human protein_coding chr8:35606098 chr8:35606100 nonsynonymous SNV 0.991 1 23 hm5C_associated_SNPs_91897 0 0 0 0 1 UNC5D chr8:35606045 3'AG 35606045 Downstream 56bp
chr19 55594839 55594839 1 + G A SKCM 55594836 + 55594816 55594856 41 ACTGACCCGCAGAGCCGCGCCTGGGAGGACCCAGTTGAGAA ACTGACCCGCAGAGCCGCGCCTGAGAGGACCCAGTTGAGAA < 41bp 0.802603967925572 0.594969843252082 0.2679616 0.108373076 prediction 0.41526824934698 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55594836 chr19:55594839 stopgain 0.967 1 24 hm5C_associated_SNPs_91899 0 0 0 0 2 EPS8L1 chr19:55594746 3'AG 55594746 Downstream 94bp
chr19 55594839 55594839 1 + G A SKCM 55594836 + 55594816 55594856 41 ACTGACCCGCAGAGCCGCGCCTGGGAGGACCCAGTTGAGAA ACTGACCCGCAGAGCCGCGCCTGAGAGGACCCAGTTGAGAA < 41bp 0.802603967925572 0.594969843252082 0.2679616 0.108373076 prediction 0.41526824934698 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55594836 chr19:55594839 stopgain 0.967 1 24 hm5C_associated_SNPs_91899 0 0 0 0 2 EPS8L1 chr19:55594887 5'GT 55594887 Upstream 49bp
chr6 35210459 35210459 1 + G A COAD 35210456 + 35210436 35210476 41 CCACCTTAAGTGTGACTCCTCTCGGAAGGGCAAGGGCCGAC CCACCTTAAGTGTGACTCCTCTCAGAAGGGCAAGGGCCGAC < 41bp 0.79862174823499 0.590995086938917 0.040489823 0.061638862 prediction 0.415253322592146 Functional Loss - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35210456 chr6:35210459 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_91905 0 0 0 0 2 SCUBE3 chr6:35210399 3'AG 35210399 Downstream 61bp
chr6 35210459 35210459 1 + G A COAD 35210456 + 35210436 35210476 41 CCACCTTAAGTGTGACTCCTCTCGGAAGGGCAAGGGCCGAC CCACCTTAAGTGTGACTCCTCTCAGAAGGGCAAGGGCCGAC < 41bp 0.79862174823499 0.590995086938917 0.040489823 0.061638862 prediction 0.415253322592146 Functional Loss - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35210456 chr6:35210459 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_91905 0 0 0 0 2 SCUBE3 chr6:35210557 5'GT 35210557 Upstream 99bp
chr4 47033961 47033961 1 + G A STAD 47033958 + 47033938 47033978 41 GAACCCAGCAACATGTCATACGTGAAAGAGACAGTGGACAG GAACCCAGCAACATGTCATACGTAAAAGAGACAGTGGACAG < 41bp 0.707620558318052 0.485497534057129 0.14606187 0.059963137 prediction 0.415241116636104 Functional Loss - GABRB1 ENSG00000163288 CDS Human protein_coding chr4:47033958 chr4:47033961 synonymous SNV . 0 24 hm5C_associated_SNPs_91911 0 0 0 0 2 GABRB1 chr4:47033931 3'AG 47033931 Downstream 31bp
chr4 47033961 47033961 1 + G A STAD 47033958 + 47033938 47033978 41 GAACCCAGCAACATGTCATACGTGAAAGAGACAGTGGACAG GAACCCAGCAACATGTCATACGTAAAAGAGACAGTGGACAG < 41bp 0.707620558318052 0.485497534057129 0.14606187 0.059963137 prediction 0.415241116636104 Functional Loss - GABRB1 ENSG00000163288 CDS Human protein_coding chr4:47033958 chr4:47033961 synonymous SNV . 0 24 hm5C_associated_SNPs_91911 0 0 0 0 2 GABRB1 chr4:47034022 5'GT 47034022 Upstream 62bp
chr2 172844210 172844210 1 + G A CESC 172844207 + 172844187 172844227 41 CTTCGACTACTGGTAACTGACATGAGTGATGCCGAACAATA CTTCGACTACTGGTAACTGACATAAGTGATGCCGAACAATA < 41bp 0.712935309499366 0.505315423462795 0.19698712 0.14135155 prediction 0.415239772073143 Functional Loss - HAT1 ENSG00000128708 CDS Human protein_coding chr2:172844207 chr2:172844210 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_91912 0 0 1 0 2 HAT1 chr2:172844160 3'AG 172844160 Downstream 51bp
chr2 172844210 172844210 1 + G A CESC 172844207 + 172844187 172844227 41 CTTCGACTACTGGTAACTGACATGAGTGATGCCGAACAATA CTTCGACTACTGGTAACTGACATAAGTGATGCCGAACAATA < 41bp 0.712935309499366 0.505315423462795 0.19698712 0.14135155 prediction 0.415239772073143 Functional Loss - HAT1 ENSG00000128708 CDS Human protein_coding chr2:172844207 chr2:172844210 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_91912 0 0 1 0 2 HAT1 chr2:172844276 5'GT 172844276 Upstream 67bp
chr2 121746839 121746839 1 + G T rs147580961 121746835 + 121746815 121746855 41 AGGATGGTGGCTGCGGACTCCAACGTGGGCCCCTCCGCCCC AGGATGGTGGCTGCGGACTCCAACTTGGGCCCCTCCGCCCC < 41bp 0.709769722407252 0.502152327759591 0.41446912 0.1707736 prediction 0.415234789295323 Functional Loss - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121746835 chr2:121746839 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_91916 2 0 1 0 1 GLI2 chr2:121746934 5'GT 121746934 Upstream 96bp
chr7 129987683 129987683 1 + C T SKCM 129987680 + 129987660 129987700 41 GGGATCTGGAGGGCCTGAAACCCCAGAAGGTGAGGACTCCT GGGATCTGGAGGGCCTGAAACCCTAGAAGGTGAGGACTCCT < 41bp 0.777203245014739 0.569586761218055 0.40448225 0.31702834 prediction 0.415232967593369 Functional Loss - CPA5 ENSG00000158525 CDS Human protein_coding chr7:129987680 chr7:129987683 stopgain 0.998 0 24 hm5C_associated_SNPs_91917 0 0 0 0 2 CPA5 chr7:129987607 3'AG 129987607 Downstream 77bp
chr7 129987683 129987683 1 + C T SKCM 129987680 + 129987660 129987700 41 GGGATCTGGAGGGCCTGAAACCCCAGAAGGTGAGGACTCCT GGGATCTGGAGGGCCTGAAACCCTAGAAGGTGAGGACTCCT < 41bp 0.777203245014739 0.569586761218055 0.40448225 0.31702834 prediction 0.415232967593369 Functional Loss - CPA5 ENSG00000158525 CDS Human protein_coding chr7:129987680 chr7:129987683 stopgain 0.998 0 24 hm5C_associated_SNPs_91917 0 0 0 0 2 CPA5 chr7:129987688 5'GT 129987688 Upstream 6bp
chr2 128184716 128184716 1 + C T CESC 128184713 + 128184693 128184733 41 GACTCAAAGAAGAAGCTGGCCTGCGGGGCAGTGCTCATCCA GACTCAAAGAAGAAGCTGGCCTGTGGGGCAGTGCTCATCCA < 41bp 0.761875530288135 0.554260355702051 0.3040798 0.14857736 prediction 0.415230349172169 Functional Loss - PROC ENSG00000115718 CDS Human protein_coding chr2:128184713 chr2:128184716 synonymous SNV . 0 24 hm5C_associated_SNPs_91918 0 0 1 0 2 PROC chr2:128184681 3'AG 128184681 Downstream 36bp
chr2 128184716 128184716 1 + C T CESC 128184713 + 128184693 128184733 41 GACTCAAAGAAGAAGCTGGCCTGCGGGGCAGTGCTCATCCA GACTCAAAGAAGAAGCTGGCCTGTGGGGCAGTGCTCATCCA < 41bp 0.761875530288135 0.554260355702051 0.3040798 0.14857736 prediction 0.415230349172169 Functional Loss - PROC ENSG00000115718 CDS Human protein_coding chr2:128184713 chr2:128184716 synonymous SNV . 0 24 hm5C_associated_SNPs_91918 0 0 1 0 2 PROC chr2:128184798 5'GT 128184798 Upstream 83bp
chr2 121736134 121736134 1 + C T UCEC 121736132 + 121736112 121736152 41 GTGGTGCACATGCGGCGACACACGGGCGAGAAGCCCCACAA GTGGTGCACATGCGGCGACACATGGGCGAGAAGCCCCACAA < 41bp 0.835187814382743 0.627572919910075 0.14908352 0.23557732 prediction 0.415229788945337 Functional Loss - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121736132 chr2:121736134 nonsynonymous SNV 0.987 5 23 hm5C_associated_SNPs_91919 0 0 0 0 1 GLI2 chr2:121736159 5'GT 121736159 Upstream 26bp
chr20 9496129 9496129 1 + G A HNSC 9496126 + 9496106 9496146 41 TGGCTCAAATCATGGCAGAACAAGAAGTGGAAAATCTCTCA TGGCTCAAATCATGGCAGAACAAAAAGTGGAAAATCTCTCA < 41bp 0.70761352300303 0.472289306272796 0.86239845 0.7772137 prediction 0.41522704600606 Functional Loss - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9496126 chr20:9496129 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91921 0 0 0 0 1 LAMP5 chr20:9496100 3'AG 9496100 Downstream 30bp
chr14 105931448 105931448 1 + G A UCEC 105931445 + 105931425 105931465 41 CCGCAGGCACGGCGCGGCTGCCCGAAGCCTCCCAGAGCCCG CCGCAGGCACGGCGCGGCTGCCCAAAGCCTCCCAGAGCCCG < 41bp 0.81138417367391 0.603772771806419 0.16684684 0.09165749 prediction 0.415222803734981 Functional Loss - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105931445 chr14:105931448 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_91924 0 0 1 0 2 MTA1 chr14:105931431 3'AG 105931431 Downstream 18bp
chr14 105931448 105931448 1 + G A UCEC 105931445 + 105931425 105931465 41 CCGCAGGCACGGCGCGGCTGCCCGAAGCCTCCCAGAGCCCG CCGCAGGCACGGCGCGGCTGCCCAAAGCCTCCCAGAGCCCG < 41bp 0.81138417367391 0.603772771806419 0.16684684 0.09165749 prediction 0.415222803734981 Functional Loss - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105931445 chr14:105931448 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_91924 0 0 1 0 2 MTA1 chr14:105931520 5'GT 105931520 Upstream 73bp
chr12 38710792 38710792 1 + G A UCEC 38710789 + 38710769 38710809 41 CCGCCTTCAGCCGGGCGCTGCGAGAGCCCTACATGGACGAG CCGCCTTCAGCCGGGCGCTGCGAAAGCCCTACATGGACGAG < 41bp 0.796711291420319 0.589103936146269 0.9089371 0.09812942 prediction 0.415214710548099 Functional Loss - ALG10B ENSG00000175548 CDS Human protein_coding chr12:38710789 chr12:38710792 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_91929 0 0 0 0 1 ALG10B chr12:38710866 5'GT 38710866 Upstream 75bp
chr10 26310494 26310494 1 + G T LUSC 26310492 + 26310472 26310512 41 CCAGATGTGACACTTGGTCCCTGGGTATCACGGCCATTGAG CCAGATGTGACACTTGGTCCCTTGGTATCACGGCCATTGAG < 41bp 0.707605797342263 0.357924210476661 0.47332695 0.03825584 prediction 0.415211594684527 Functional Loss - MYO3A ENSG00000095777 CDS Human protein_coding chr10:26310492 chr10:26310494 synonymous SNV . 0 23 hm5C_associated_SNPs_91931 0 0 0 0 2 MYO3A chr10:26310432 3'AG 26310432 Downstream 63bp
chr10 26310494 26310494 1 + G T LUSC 26310492 + 26310472 26310512 41 CCAGATGTGACACTTGGTCCCTGGGTATCACGGCCATTGAG CCAGATGTGACACTTGGTCCCTTGGTATCACGGCCATTGAG < 41bp 0.707605797342263 0.357924210476661 0.47332695 0.03825584 prediction 0.415211594684527 Functional Loss - MYO3A ENSG00000095777 CDS Human protein_coding chr10:26310492 chr10:26310494 synonymous SNV . 0 23 hm5C_associated_SNPs_91931 0 0 0 0 2 MYO3A chr10:26310577 5'GT 26310577 Upstream 84bp
chr10 26310495 26310495 1 + G T UCEC 26310492 + 26310472 26310512 41 CCAGATGTGACACTTGGTCCCTGGGTATCACGGCCATTGAG CCAGATGTGACACTTGGTCCCTGTGTATCACGGCCATTGAG < 41bp 0.707605797342263 0.315292722421385 0.47332695 0.025333434 prediction 0.415211594684527 Functional Loss - MYO3A ENSG00000095777 CDS Human protein_coding chr10:26310492 chr10:26310495 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_91932 0 0 0 0 2 MYO3A chr10:26310432 3'AG 26310432 Downstream 64bp
chr10 26310495 26310495 1 + G T UCEC 26310492 + 26310472 26310512 41 CCAGATGTGACACTTGGTCCCTGGGTATCACGGCCATTGAG CCAGATGTGACACTTGGTCCCTGTGTATCACGGCCATTGAG < 41bp 0.707605797342263 0.315292722421385 0.47332695 0.025333434 prediction 0.415211594684527 Functional Loss - MYO3A ENSG00000095777 CDS Human protein_coding chr10:26310492 chr10:26310495 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_91932 0 0 0 0 2 MYO3A chr10:26310577 5'GT 26310577 Upstream 83bp
chr2 29354162 29354162 1 + G A SKCM 29354159 + 29354139 29354179 41 ATCCTAATGATGCATCATGCCAGGAAATTCTTTTTGATCCC ATCCTAATGATGCATCATGCCAGAAAATTCTTTTTGATCCC < 41bp 0.749944046014721 0.542339395785122 0.33869916 0.15667707 prediction 0.415209300459198 Functional Loss - CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29354159 chr2:29354162 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91935 0 0 1 1 1 CLIP4 chr2:29354124 3'AG 29354124 Downstream 39bp
chr20 43545480 43545480 1 + C T SKCM 43545477 + 43545457 43545497 41 GCCGCACAGCAGGCCATCAACACCATGAATGGGATGCTGCT GCCGCACAGCAGGCCATCAACACTATGAATGGGATGCTGCT < 41bp 0.742667368569609 0.535064322650092 0.1635415 0.124865174 prediction 0.415206091839035 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545477 chr20:43545480 synonymous SNV . 0 24 hm5C_associated_SNPs_91936 0 0 1 9 1 PABPC1L chr20:43545397 3'AG 43545397 Downstream 84bp
chr19 50180570 50180570 1 + G A LIHC 50180567 + 50180547 50180587 41 GCCGAGGCCGCGAACTGCATCATGGAGGTGAGCGCTTGGAG GCCGAGGCCGCGAACTGCATCATAGAGGTGAGCGCTTGGAG < 41bp 0.759501010650121 0.551900419014227 0.5461771 0.46881452 prediction 0.41520118327179 Functional Loss - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50180567 chr19:50180570 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_91938 0 0 1 0 1 PRMT1 chr19:50180573 5'GT 50180573 Upstream 4bp
chr8 2021538 2021538 1 + C T UCEC 2021536 + 2021516 2021556 41 GTACACCCTGCGCATCGTGTCTCGGGGCGGCGTCAGCGACC GTACACCCTGCGCATCGTGTCTTGGGGCGGCGTCAGCGACC < 41bp 0.850272704169844 0.642672477283042 0.091107786 0.11090246 prediction 0.415200453773604 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2021536 chr8:2021538 nonsynonymous SNV 0.036 2 23 hm5C_associated_SNPs_91939 0 0 0 0 1 MYOM2 chr8:2021580 5'GT 2021580 Upstream 43bp
chr12 65264537 65264537 1 + C T UCEC 65264535 + 65264515 65264555 41 TGCACTGAAGCGGCAGTACTCTCGAATTAAAAAGAAGCAAC TGCACTGAAGCGGCAGTACTCTTGAATTAAAAAGAAGCAAC < 41bp 0.88005602671991 0.672457737940708 0.81328094 0.21450478 prediction 0.415196577558404 Functional Loss - TBC1D30 ENSG00000111490 CDS Human protein_coding chr12:65264535 chr12:65264537 stopgain 0.092 1 23 hm5C_associated_SNPs_91941 0 0 0 0 1 TBC1D30 chr12:65264588 5'GT 65264588 Upstream 52bp
chr19 51981875 51981875 1 + C T SKCM 51981873 + 51981853 51981893 41 TGTCTCTGGAGGGACCCCTCCTCCTGGAGGACCCCAGGCAG TGTCTCTGGAGGGACCCCTCCTTCTGGAGGACCCCAGGCAG < 41bp 0.707596961507342 0.426274098053313 0.1284321 0.07329744 prediction 0.415193923014684 Functional Loss - CEACAM18 ENSG00000213822 CDS Human protein_coding chr19:51981873 chr19:51981875 synonymous SNV . 0 23 hm5C_associated_SNPs_91942 0 0 0 0 1 CEACAM18 chr19:51981948 5'GT 51981948 Upstream 74bp
chr20 37531336 37531336 1 + G A COAD 37531333 + 37531313 37531353 41 ATCACCCAAGAGAAAATCAACGAGATGCGGGTGGCTCCTGA ATCACCCAAGAGAAAATCAACGAAATGCGGGTGGCTCCTGA < 41bp 0.707595403575161 0.461835451671675 0.8970982 0.8613525 prediction 0.415190807150322 Functional Loss - PPP1R16B ENSG00000101445 CDS Human protein_coding chr20:37531333 chr20:37531336 synonymous SNV . 0 24 hm5C_associated_SNPs_91943 0 0 0 0 2 PPP1R16B chr20:37531311 3'AG 37531311 Downstream 26bp
chr20 37531336 37531336 1 + G A COAD 37531333 + 37531313 37531353 41 ATCACCCAAGAGAAAATCAACGAGATGCGGGTGGCTCCTGA ATCACCCAAGAGAAAATCAACGAAATGCGGGTGGCTCCTGA < 41bp 0.707595403575161 0.461835451671675 0.8970982 0.8613525 prediction 0.415190807150322 Functional Loss - PPP1R16B ENSG00000101445 CDS Human protein_coding chr20:37531333 chr20:37531336 synonymous SNV . 0 24 hm5C_associated_SNPs_91943 0 0 0 0 2 PPP1R16B chr20:37531435 5'GT 37531435 Upstream 100bp
chr1 107979396 107979396 1 + A C rs480392 107979392 + 107979372 107979412 41 TAAGTGTGATGAGTGTCTGCCGGGAAATTCCTGGCACTACG TAAGTGTGATGAGTGTCTGCCGGGCAATTCCTGGCACTACG < 41bp 0.707594322270986 0.338912596764796 0.8912039 0.8782612 prediction 0.415188644541972 Functional Loss - NTNG1 ENSG00000162631 CDS Human protein_coding chr1:107979392 chr1:107979396 synonymous SNV . 0 25 hm5C_associated_SNPs_91944 0 0 1 0 1 NTNG1 chr1:107979421 5'GT 107979421 Upstream 26bp
chr22 46708101 46708101 1 + C T ESCA 46708098 + 46708078 46708118 41 TCCCAGCTGAGAAGGAATCCCACCGGGATGTTCTCCCTGAC TCCCAGCTGAGAAGGAATCCCACTGGGATGTTCTCCCTGAC < 41bp 0.756751110664057 0.549160075592743 0.1795702 0.25460702 prediction 0.415182070142627 Functional Loss - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46708098 chr22:46708101 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_91945 0 0 1 0 1 GTSE1 chr22:46708038 3'AG 46708038 Downstream 64bp
chr20 48604461 48604461 1 + C T LUAD 48604458 + 48604438 48604478 41 AGCCGTGCCTTCGCTGACCGCTCCAACCTGCGGGCCCACCT AGCCGTGCCTTCGCTGACCGCTCTAACCTGCGGGCCCACCT < 41bp 0.773534180167973 0.565943913020653 0.8772447 0.85448444 prediction 0.41518053429464 Functional Loss - SNAI1 ENSG00000124216 CDS Human protein_coding chr20:48604458 chr20:48604461 synonymous SNV . 0 24 hm5C_associated_SNPs_91946 0 0 1 0 1 SNAI1 chr20:48604409 3'AG 48604409 Downstream 53bp
chr1 18661458 18661458 1 + G A SKCM 18661455 + 18661435 18661475 41 GGCATCTACGACCGCGCCACCAGGGAGAAGGTGGTCCTGGC GGCATCTACGACCGCGCCACCAGAGAGAAGGTGGTCCTGGC < 41bp 0.812839817897194 0.605250129973951 0.9128548 0.8638913 prediction 0.415179375846487 Functional Loss - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18661455 chr1:18661458 synonymous SNV . 0 24 hm5C_associated_SNPs_91947 0 0 0 0 2 IGSF21 chr1:18661386 3'AG 18661386 Downstream 73bp
chr1 18661458 18661458 1 + G A SKCM 18661455 + 18661435 18661475 41 GGCATCTACGACCGCGCCACCAGGGAGAAGGTGGTCCTGGC GGCATCTACGACCGCGCCACCAGAGAGAAGGTGGTCCTGGC < 41bp 0.812839817897194 0.605250129973951 0.9128548 0.8638913 prediction 0.415179375846487 Functional Loss - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18661455 chr1:18661458 synonymous SNV . 0 24 hm5C_associated_SNPs_91947 0 0 0 0 2 IGSF21 chr1:18661504 5'GT 18661504 Upstream 47bp
chr2 55094020 55094020 1 + G A UCEC 55094017 + 55093997 55094037 41 GCTTGAAACTCCAGTTCATACACGGGTGGGTGGCCTGTCAT GCTTGAAACTCCAGTTCATACACAGGTGGGTGGCCTGTCAT < 41bp 0.801043223092917 0.593454819259407 0.16996104 0.045241058 prediction 0.415176807667019 Functional Loss - EML6 ENSG00000214595 CDS Human protein_coding chr2:55094017 chr2:55094020 nonsynonymous SNV 0.983 3 24 hm5C_associated_SNPs_91949 0 0 1 0 1 EML6 chr2:55094021 5'GT 55094021 Upstream 2bp
chr19 18306903 18306903 1 + T C UCEC 18306902 + 18306882 18306922 41 ACCAGATGCAAGACTGTCTCCTGGCGGACCACCCCCTCTGA ACCAGATGCAAGACTGTCTCCCGGCGGACCACCCCCTCTGA < 41bp 0.765301813028027 0.557713800771541 0.8966605 0.93333244 prediction 0.415176024512973 Functional Loss - MPV17L2 ENSG00000254858 UTR3 Human protein_coding chr19:18306902 chr19:18306903 . . 0 22 hm5C_associated_SNPs_91950 0 0 1 0 1 MPV17L2 chr19:18306809 3'AG 18306809 Downstream 95bp
chr20 2845881 2845881 1 + G A BLCA 2845878 + 2845858 2845898 41 AGTTCCTAGACCTGTCTCTACATGACACAGTTACCACCCTC AGTTCCTAGACCTGTCTCTACATAACACAGTTACCACCCTC < 41bp 0.707587070275548 0.463686782958468 0.039338976 0.030674815 prediction 0.415174140551096 Functional Loss - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2845878 chr20:2845881 nonsynonymous SNV 0.965 1 24 hm5C_associated_SNPs_91952 0 0 1 0 2 VPS16 chr20:2845794 3'AG 2845794 Downstream 88bp
chr20 2845881 2845881 1 + G A BLCA 2845878 + 2845858 2845898 41 AGTTCCTAGACCTGTCTCTACATGACACAGTTACCACCCTC AGTTCCTAGACCTGTCTCTACATAACACAGTTACCACCCTC < 41bp 0.707587070275548 0.463686782958468 0.039338976 0.030674815 prediction 0.415174140551096 Functional Loss - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2845878 chr20:2845881 nonsynonymous SNV 0.965 1 24 hm5C_associated_SNPs_91952 0 0 1 0 2 VPS16 chr20:2845963 5'GT 2845963 Upstream 83bp
chr20 19937341 19937341 1 + T C LIHC 19937340 + 19937320 19937360 41 GACTCAGGCTATGACAGCCTCTCCAACAGGCTCAGCATCTT GACTCAGGCTATGACAGCCTCCCCAACAGGCTCAGCATCTT < 41bp 0.864390663869775 0.65680463002286 0.9660868 0.049624503 prediction 0.41517206769383 Functional Loss - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19937340 chr20:19937341 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_91953 0 0 0 0 1 RIN2 chr20:19937259 3'AG 19937259 Downstream 83bp
chr10 85961613 85961613 1 + C T HNSC 85961611 + 85961591 85961631 41 GCCACAGCGGTGTGCTGCGCCTCCAGGCTGGGGCCACTCTG GCCACAGCGGTGTGCTGCGCCTTCAGGCTGGGGCCACTCTG < 41bp 0.888817317394754 0.681232821661608 0.93641746 0.35072777 prediction 0.415168991466291 Functional Loss - CDHR1 ENSG00000148600 CDS Human protein_coding chr10:85961611 chr10:85961613 synonymous SNV . 0 23 hm5C_associated_SNPs_91955 0 0 0 0 1 CDHR1 chr10:85961676 5'GT 85961676 Upstream 64bp
chr16 89390709 89390709 1 + G A rs192788151 89390706 + 89390686 89390726 41 GTGCTCCGGAACACGGACCACCCGACAGGAGCACGGACACA GTGCTCCGGAACACGGACCACCCAACAGGAGCACGGACACA < 41bp 0.767746158599191 0.560165133973801 0.14742303 0.05945456 prediction 0.415162049250781 Functional Loss - LOC100287036 ENSG00000261253 ncRNA_exonic Human antisense chr16:89390706 chr16:89390709 . . 0 24 hm5C_associated_SNPs_91957 0 0 0 0 1 LOC100287036 chr16:89390644 3'AG 89390644 Downstream 66bp
chr2 103059752 103059752 1 + G A SKCM 103059749 + 103059729 103059769 41 GGTACATCAAAGATTCTGACCTAGAGTGGGAAGTCTCAGTA GGTACATCAAAGATTCTGACCTAAAGTGGGAAGTCTCAGTA < 41bp 0.771459591717591 0.56388177254435 0.25146866 0.2596745 prediction 0.415155638346483 Functional Loss - IL18RAP ENSG00000115607 CDS Human protein_coding chr2:103059749 chr2:103059752 nonsynonymous SNV 0.020 0 24 hm5C_associated_SNPs_91961 0 0 0 0 2 IL18RAP chr2:103059660 3'AG 103059660 Downstream 93bp
chr2 103059752 103059752 1 + G A SKCM 103059749 + 103059729 103059769 41 GGTACATCAAAGATTCTGACCTAGAGTGGGAAGTCTCAGTA GGTACATCAAAGATTCTGACCTAAAGTGGGAAGTCTCAGTA < 41bp 0.771459591717591 0.56388177254435 0.25146866 0.2596745 prediction 0.415155638346483 Functional Loss - IL18RAP ENSG00000115607 CDS Human protein_coding chr2:103059749 chr2:103059752 nonsynonymous SNV 0.020 0 24 hm5C_associated_SNPs_91961 0 0 0 0 2 IL18RAP chr2:103059783 5'GT 103059783 Upstream 32bp
chr19 4429760 4429760 1 + G A UCEC 4429757 + 4429737 4429777 41 GGAGTGGGAAGAAGAGGAGCCTGGGGAGTCCCTGTCCCACA GGAGTGGGAAGAAGAGGAGCCTGAGGAGTCCCTGTCCCACA < 41bp 0.821416701917789 0.61384287220412 0.9038236 0.62253183 prediction 0.415147659427338 Functional Loss - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4429757 chr19:4429760 nonsynonymous SNV 0.829 3 24 hm5C_associated_SNPs_91964 0 0 1 0 2 CHAF1A chr19:4429705 3'AG 4429705 Downstream 56bp
chr19 4429760 4429760 1 + G A UCEC 4429757 + 4429737 4429777 41 GGAGTGGGAAGAAGAGGAGCCTGGGGAGTCCCTGTCCCACA GGAGTGGGAAGAAGAGGAGCCTGAGGAGTCCCTGTCCCACA < 41bp 0.821416701917789 0.61384287220412 0.9038236 0.62253183 prediction 0.415147659427338 Functional Loss - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4429757 chr19:4429760 nonsynonymous SNV 0.829 3 24 hm5C_associated_SNPs_91964 0 0 1 0 2 CHAF1A chr19:4429785 5'GT 4429785 Upstream 26bp
chr1 150300894 150300894 1 + C T LUSC 150300891 + 150300871 150300911 41 AGAGGTGATCCCTGGGCCTCCATCAGAGAGCCCTGGCATGC AGAGGTGATCCCTGGGCCTCCATTAGAGAGCCCTGGCATGC < 41bp 0.707573162314534 0.483256983196657 0.40449762 0.19565621 prediction 0.415146324629068 Functional Loss - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150300891 chr1:150300894 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_91965 0 0 1 0 1 PRPF3 chr1:150300925 5'GT 150300925 Upstream 32bp
chr18 67266701 67266701 1 + G A READ 67266698 + 67266678 67266718 41 ATGCGGTGGCAATCATCTTTCACGATGAAACATCGAAGACA ATGCGGTGGCAATCATCTTTCACAATGAAACATCGAAGACA < 41bp 0.737965839145 0.530392908693658 0.38833565 0.14873907 prediction 0.415145860902683 Functional Loss - DOK6 ENSG00000206052 CDS Human protein_coding chr18:67266698 chr18:67266701 nonsynonymous SNV 0.940 4 24 hm5C_associated_SNPs_91967 0 0 1 0 2 DOK6 chr18:67266620 3'AG 67266620 Downstream 82bp
chr18 67266701 67266701 1 + G A READ 67266698 + 67266678 67266718 41 ATGCGGTGGCAATCATCTTTCACGATGAAACATCGAAGACA ATGCGGTGGCAATCATCTTTCACAATGAAACATCGAAGACA < 41bp 0.737965839145 0.530392908693658 0.38833565 0.14873907 prediction 0.415145860902683 Functional Loss - DOK6 ENSG00000206052 CDS Human protein_coding chr18:67266698 chr18:67266701 nonsynonymous SNV 0.940 4 24 hm5C_associated_SNPs_91967 0 0 1 0 2 DOK6 chr18:67266734 5'GT 67266734 Upstream 34bp
chr3 52242255 52242255 1 + G A UCEC 52242252 + 52242232 52242272 41 GCCAAAAATGGACATCATTTCTGGAACACTTGGTATGTATA GCCAAAAATGGACATCATTTCTGAAACACTTGGTATGTATA < 41bp 0.726096267387091 0.518524399349914 0.4927465 0.14683494 prediction 0.415143736074353 Functional Loss - ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52242252 chr3:52242255 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_91969 0 0 1 0 1 ALAS1 chr3:52242263 5'GT 52242263 Upstream 9bp
chr11 64877254 64877254 1 + C T COAD 64877251 + 64877231 64877271 41 GCGCGGCGGCTGCTGACCCACTACGTGAAGGTGCAGGGCCT GCGCGGCGGCTGCTGACCCACTATGTGAAGGTGCAGGGCCT < 41bp 0.715264574442641 0.50769314851792 0.30478144 0.3539827 prediction 0.415142851849441 Functional Loss - VPS51 ENSG00000149823 CDS Human protein_coding chr11:64877251 chr11:64877254 synonymous SNV . 0 24 hm5C_associated_SNPs_91970 0 0 1 0 1 VPS51 chr11:64877177 3'AG 64877177 Downstream 78bp
chr19 57929366 57929366 1 + C T PAAD 57929363 + 57929343 57929383 41 GACGTTCAGAGACACCTGCACAGCGATGTGATGCTGGAGAA GACGTTCAGAGACACCTGCACAGTGATGTGATGCTGGAGAA < 41bp 0.755885611828268 0.548321702316275 0.21205866 0.21309069 prediction 0.415127819023986 Functional Loss - ZNF17 ENSG00000186272;ENSG00000269533 CDS Human other chr19:57929363 chr19:57929366 synonymous SNV . 0 24 hm5C_associated_SNPs_91976 0 0 1 0 2 ZNF17 chr19:57929280 3'AG 57929280 Downstream 87bp
chr19 57929366 57929366 1 + C T PAAD 57929363 + 57929343 57929383 41 GACGTTCAGAGACACCTGCACAGCGATGTGATGCTGGAGAA GACGTTCAGAGACACCTGCACAGTGATGTGATGCTGGAGAA < 41bp 0.755885611828268 0.548321702316275 0.21205866 0.21309069 prediction 0.415127819023986 Functional Loss - ZNF17 ENSG00000186272;ENSG00000269533 CDS Human other chr19:57929363 chr19:57929366 synonymous SNV . 0 24 hm5C_associated_SNPs_91976 0 0 1 0 2 ZNF17 chr19:57929406 5'GT 57929406 Upstream 41bp
chr2 3691071 3691071 1 + C T rs34436491 3691068 + 3691048 3691088 41 TGCAGCCAGCTGCGCAAGGCCATCGGGGAGATGGACAACCA TGCAGCCAGCTGCGCAAGGCCATTGGGGAGATGGACAACCA < 41bp 0.736857595138034 0.529295942294317 0.678594 0.642411 prediction 0.415123305687434 Functional Loss - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3691068 chr2:3691071 synonymous SNV . 0 24 hm5C_associated_SNPs_91977 0 0 0 0 2 COLEC11 chr2:3691034 3'AG 3691034 Downstream 38bp
chr2 3691071 3691071 1 + C T rs34436491 3691068 + 3691048 3691088 41 TGCAGCCAGCTGCGCAAGGCCATCGGGGAGATGGACAACCA TGCAGCCAGCTGCGCAAGGCCATTGGGGAGATGGACAACCA < 41bp 0.736857595138034 0.529295942294317 0.678594 0.642411 prediction 0.415123305687434 Functional Loss - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3691068 chr2:3691071 synonymous SNV . 0 24 hm5C_associated_SNPs_91977 0 0 0 0 2 COLEC11 chr2:3691129 5'GT 3691129 Upstream 59bp
chr10 5144389 5144389 1 + C T LGG 5144386 + 5144366 5144406 41 CCTATAGTGCTCTGGGATCTCAACGAGACAAACGATGGTAA CCTATAGTGCTCTGGGATCTCAATGAGACAAACGATGGTAA < 41bp 0.707561531781745 0.493889665024216 0.26130176 0.34205124 prediction 0.41512306356349 Functional Loss - AKR1C3 ENSG00000196139 CDS Human protein_coding chr10:5144386 chr10:5144389 stopgain 0.000 1 24 hm5C_associated_SNPs_91978 0 0 1 0 2 AKR1C3 chr10:5144293 3'AG 5144293 Downstream 97bp
chr10 5144389 5144389 1 + C T LGG 5144386 + 5144366 5144406 41 CCTATAGTGCTCTGGGATCTCAACGAGACAAACGATGGTAA CCTATAGTGCTCTGGGATCTCAATGAGACAAACGATGGTAA < 41bp 0.707561531781745 0.493889665024216 0.26130176 0.34205124 prediction 0.41512306356349 Functional Loss - AKR1C3 ENSG00000196139 CDS Human protein_coding chr10:5144386 chr10:5144389 stopgain 0.000 1 24 hm5C_associated_SNPs_91978 0 0 1 0 2 AKR1C3 chr10:5144402 5'GT 5144402 Upstream 14bp
chr17 37879595 37879595 1 + C T COAD 37879592 + 37879572 37879612 41 CCCTCTGACGTCCATCATCTCTGCGGTGGTTGGCATTCTGC CCCTCTGACGTCCATCATCTCTGTGGTGGTTGGCATTCTGC < 41bp 0.740831308948743 0.533274511315994 0.37928528 0.20939532 prediction 0.415113595265498 Functional Loss - ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37879592 chr17:37879595 nonsynonymous SNV 0.454 0 24 hm5C_associated_SNPs_91982 0 0 1 0 1 ERBB2 chr17:37879572 3'AG 37879572 Downstream 24bp
chr12 6884503 6884503 1 + C T SKCM 6884500 + 6884480 6884520 41 GGTTCCAGGGTGGGGCTGCCCTGCCGCCTGCCTGCTGGTGT GGTTCCAGGGTGGGGCTGCCCTGTCGCCTGCCTGCTGGTGT < 41bp 0.707554777893401 0.487416191661748 0.120386004 0.058369607 prediction 0.415109555786802 Functional Loss - LAG3 ENSG00000089692 CDS Human protein_coding chr12:6884500 chr12:6884503 synonymous SNV . 0 24 hm5C_associated_SNPs_91983 0 0 0 0 1 LAG3 chr12:6884439 3'AG 6884439 Downstream 65bp
chr19 16337256 16337256 1 + C T UCEC 16337253 + 16337233 16337273 41 TCAGCGCCAACGGCAATGTCCTGCGCAGCGAGATCGTGGGC TCAGCGCCAACGGCAATGTCCTGTGCAGCGAGATCGTGGGC < 41bp 0.745044115971505 0.537490491175387 0.13003522 0.10226631 prediction 0.415107249592236 Functional Loss - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16337253 chr19:16337256 nonsynonymous SNV 0.515 4 24 hm5C_associated_SNPs_91985 0 0 1 0 1 AP1M1 chr19:16337232 3'AG 16337232 Downstream 25bp
chr7 66660289 66660289 1 + G A SKCM 66660286 + 66660266 66660306 41 AATATGAAATTGCATGTGAACACGAACACTCTAATTGCCTC AATATGAAATTGCATGTGAACACAAACACTCTAATTGCCTC < 41bp 0.768942044115355 0.561390544182184 0.013099551 0.007007599 prediction 0.415102999866342 Functional Loss - TYW1 ENSG00000198874 CDS Human protein_coding chr7:66660286 chr7:66660289 nonsynonymous SNV 0.989 0 24 hm5C_associated_SNPs_91986 0 0 0 0 1 TYW1 chr7:66660324 5'GT 66660324 Upstream 36bp
chr20 36024642 36024642 1 + G A KIRC 36024639 + 36024619 36024659 41 AGCACTACAAGATCCGCAAGCTGGACAGCGGCGGCTTCTAC AGCACTACAAGATCCGCAAGCTGAACAGCGGCGGCTTCTAC < 41bp 0.81630064721271 0.608753529791202 0.08003366 0.10649806 prediction 0.415094234843016 Functional Loss - SRC ENSG00000197122 CDS Human protein_coding chr20:36024639 chr20:36024642 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_91990 0 0 0 0 2 SRC chr20:36024565 3'AG 36024565 Downstream 78bp
chr20 36024642 36024642 1 + G A KIRC 36024639 + 36024619 36024659 41 AGCACTACAAGATCCGCAAGCTGGACAGCGGCGGCTTCTAC AGCACTACAAGATCCGCAAGCTGAACAGCGGCGGCTTCTAC < 41bp 0.81630064721271 0.608753529791202 0.08003366 0.10649806 prediction 0.415094234843016 Functional Loss - SRC ENSG00000197122 CDS Human protein_coding chr20:36024639 chr20:36024642 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_91990 0 0 0 0 2 SRC chr20:36024714 5'GT 36024714 Upstream 73bp
chr11 69465940 69465940 1 + C T BRCA 69465937 + 69465917 69465957 41 AAGCCCTGCTGGAGTCAAGCCTGCGCCAGGCCCAGCAGAAC AAGCCCTGCTGGAGTCAAGCCTGTGCCAGGCCCAGCAGAAC < 41bp 0.74165928585479 0.53411882889351 0.21384823 0.18383518 prediction 0.41508091392256 Functional Loss - CCND1 ENSG00000110092 CDS Human protein_coding chr11:69465937 chr11:69465940 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_91995 0 0 1 0 1 CCND1 chr11:69465886 3'AG 69465886 Downstream 55bp
chr17 72345452 72345452 1 + G T LUAD 72345448 + 72345428 72345468 41 CAGACTGGGCGGGGCCAGGCCCGGGGCCGGCAGGATCGGGG CAGACTGGGCGGGGCCAGGCCCGGTGCCGGCAGGATCGGGG < 41bp 0.734500320855504 0.526964193916956 0.91960776 0.42643926 prediction 0.415072253877095 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72345448 chr17:72345452 nonsynonymous SNV 0.930 1 25 hm5C_associated_SNPs_92000 0 0 0 0 1 KIF19 chr17:72345488 5'GT 72345488 Upstream 37bp
chr2 7035963 7035963 1 + G A LUSC 7035960 + 7035940 7035980 41 AGGACCCTTCCAAGTCCATCCTGGATGTTGGTGTAGAAGAA AGGACCCTTCCAAGTCCATCCTGAATGTTGGTGTAGAAGAA < 41bp 0.780946557285433 0.573415598234815 0.20654574 0.09061512 prediction 0.415061918101237 Functional Loss - RSAD2 ENSG00000134321 CDS Human protein_coding chr2:7035960 chr2:7035963 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_92004 0 0 0 0 1 RSAD2 chr2:7035909 3'AG 7035909 Downstream 55bp
chr13 49749622 49749622 1 + G A UCEC 49749619 + 49749599 49749639 41 CTTACAATGGAGTAAGCCCTCAGGAACACCATCAGATGAAG CTTACAATGGAGTAAGCCCTCAGAAACACCATCAGATGAAG < 41bp 0.760615245720905 0.55308447341125 0.43153203 0.23912919 prediction 0.41506154461931 Functional Loss - FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49749619 chr13:49749622 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_92005 0 0 1 1 1 FNDC3A chr13:49749677 5'GT 49749677 Upstream 56bp
chr12 132249157 132249157 1 + C T BLCA 132249154 + 132249134 132249174 41 TAGTGCTGCAAACACTAACCCAGCAGTTGCCCCACCCTGTG TAGTGCTGCAAACACTAACCCAGTAGTTGCCCCACCCTGTG < 41bp 0.765026120996484 0.557495611247677 0.5228463 0.49861813 prediction 0.415061019497613 Functional Loss - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132249154 chr12:132249157 nonsynonymous SNV 0.012 1 24 hm5C_associated_SNPs_92006 0 0 1 0 1 SFSWAP chr12:132249231 5'GT 132249231 Upstream 75bp
chr1 202976926 202976926 1 + C T SKCM 202976924 + 202976904 202976944 41 ACCGTGGCGGATTACGCCAACTCGGATCCGGCGGTCGTGAG ACCGTGGCGGATTACGCCAACTTGGATCCGGCGGTCGTGAG < 41bp 0.844004014517184 0.636474204454157 0.12136185 0.19501042 prediction 0.415059620126054 Functional Loss - TMEM183A;TMEM183B ENSG00000163444 CDS Human protein_coding chr1:202976924 chr1:202976926 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_92007 0 0 1 0 2 TMEM183A;TMEM183B chr1:202976902 3'AG 202976902 Downstream 25bp
chr1 202976926 202976926 1 + C T SKCM 202976924 + 202976904 202976944 41 ACCGTGGCGGATTACGCCAACTCGGATCCGGCGGTCGTGAG ACCGTGGCGGATTACGCCAACTTGGATCCGGCGGTCGTGAG < 41bp 0.844004014517184 0.636474204454157 0.12136185 0.19501042 prediction 0.415059620126054 Functional Loss - TMEM183A;TMEM183B ENSG00000163444 CDS Human protein_coding chr1:202976924 chr1:202976926 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_92007 0 0 1 0 2 TMEM183A;TMEM183B chr1:202976991 5'GT 202976991 Upstream 66bp
chr20 35064573 35064573 1 + C T STAD 35064571 + 35064551 35064591 41 TCCCCACGCGAGACGGATGCCGCGGCCGAGGGCCCTATCCC TCCCCACGCGAGACGGATGCCGTGGCCGAGGGCCCTATCCC < 41bp 0.831687334526092 0.624158551172832 0.90099657 0.88456047 prediction 0.41505756670652 Functional Loss - DLGAP4 ENSG00000080845 CDS Human protein_coding chr20:35064571 chr20:35064573 nonsynonymous SNV 0.010 1 23 hm5C_associated_SNPs_92008 0 0 0 0 1 DLGAP4 chr20:35064512 3'AG 35064512 Downstream 62bp
chr1 93299177 93299177 1 + G T UCEC 93299175 + 93299155 93299195 41 AAATACAACACACCCAAATACAGGATGATAGTTCGTGTGAC AAATACAACACACCCAAATACATGATGATAGTTCGTGTGAC < 41bp 0.796886524548805 0.589361414594402 0.8107363 0.13400075 prediction 0.415050219908805 Functional Loss - RPL5 ENSG00000122406 CDS Human protein_coding chr1:93299175 chr1:93299177 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_92011 0 0 1 2 2 RPL5 chr1:93299102 3'AG 93299102 Downstream 76bp
chr1 93299177 93299177 1 + G T UCEC 93299175 + 93299155 93299195 41 AAATACAACACACCCAAATACAGGATGATAGTTCGTGTGAC AAATACAACACACCCAAATACATGATGATAGTTCGTGTGAC < 41bp 0.796886524548805 0.589361414594402 0.8107363 0.13400075 prediction 0.415050219908805 Functional Loss - RPL5 ENSG00000122406 CDS Human protein_coding chr1:93299175 chr1:93299177 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_92011 0 0 1 2 2 RPL5 chr1:93299217 5'GT 93299217 Upstream 41bp
chr17 33307586 33307586 1 + G A rs12945428 33307583 + 33307563 33307603 41 TCCAACCGTCGTGGGCTGCCCGCGGCCTGTAATGAGCAAGT TCCAACCGTCGTGGGCTGCCCGCAGCCTGTAATGAGCAAGT < 41bp 0.70752472505799 0.490511372773261 0.8683511 0.530451 prediction 0.415049450115981 Functional Loss - LIG3 ENSG00000005156 UTR5 Human protein_coding chr17:33307583 chr17:33307586 . . 0 24 hm5C_associated_SNPs_92012 0 0 1 0 2 LIG3 chr17:33307616 5'GT 33307616 Upstream 31bp
chr17 33307586 33307586 1 + G A rs12945428 33307583 + 33307563 33307603 41 TCCAACCGTCGTGGGCTGCCCGCGGCCTGTAATGAGCAAGT TCCAACCGTCGTGGGCTGCCCGCAGCCTGTAATGAGCAAGT < 41bp 0.70752472505799 0.490511372773261 0.8683511 0.530451 prediction 0.415049450115981 Functional Loss - LIG3 ENSG00000005156 UTR5 Human protein_coding chr17:33307583 chr17:33307586 . . 0 24 hm5C_associated_SNPs_92012 0 0 1 0 2 LIG3 chr17:33307641 5'GT 33307641 Upstream 56bp
chr12 58149663 58149663 1 + G C BLCA 58149659 + 58149639 58149679 41 TGCCGGATCTGCTTCCAGGGCCCGGAGCAGGTCAGGCCTGG TGCCGGATCTGCTTCCAGGGCCCGCAGCAGGTCAGGCCTGG < 41bp 0.707524411574955 0.417540103189443 0.39082468 0.19351286 prediction 0.415048823149909 Functional Loss - MARCH9 ENSG00000139266 CDS Human protein_coding chr12:58149659 chr12:58149663 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_92013 0 0 0 0 1 MARCH9 chr12:58149668 5'GT 58149668 Upstream 6bp
chr12 31144797 31144797 1 + G T SKCM 31144793 + 31144773 31144813 41 GCTCTCTCCACCTGGCAGATCTGCGGGATGGTTCTCACCTG GCTCTCTCCACCTGGCAGATCTGCTGGATGGTTCTCACCTG < 41bp 0.709679609154222 0.502155688262671 0.89927125 0.33036378 prediction 0.415047841783101 Functional Loss - TSPAN11 ENSG00000110900 CDS Human protein_coding chr12:31144793 chr12:31144797 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_92015 0 0 0 0 1 TSPAN11 chr12:31144791 3'AG 31144791 Downstream 7bp
chr9 138413956 138413956 1 + G T UCEC 138413953 + 138413933 138413973 41 GGGAGTTCCCTGAGATGAATCTGGAATCGGTGACACCCATG GGGAGTTCCCTGAGATGAATCTGTAATCGGTGACACCCATG < 41bp 0.937903679814743 0.730379997340096 0.4628944 0.19746083 prediction 0.415047364949294 Functional Loss - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138413953 chr9:138413956 stopgain 0.000 0 24 hm5C_associated_SNPs_92016 0 0 0 0 2 LCN1 chr9:138413893 3'AG 138413893 Downstream 64bp
chr9 138413956 138413956 1 + G T UCEC 138413953 + 138413933 138413973 41 GGGAGTTCCCTGAGATGAATCTGGAATCGGTGACACCCATG GGGAGTTCCCTGAGATGAATCTGTAATCGGTGACACCCATG < 41bp 0.937903679814743 0.730379997340096 0.4628944 0.19746083 prediction 0.415047364949294 Functional Loss - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138413953 chr9:138413956 stopgain 0.000 0 24 hm5C_associated_SNPs_92016 0 0 0 0 2 LCN1 chr9:138414023 5'GT 138414023 Upstream 68bp
chr9 139697161 139697161 1 + G A KIRC 139697158 + 139697138 139697178 41 AGCTGGACAAGCTGCAGAACCTCGTGGTCAACTACTGCTCA AGCTGGACAAGCTGCAGAACCTCATGGTCAACTACTGCTCA < 41bp 0.707522000268704 0.450705873323023 0.04400611 0.044864595 prediction 0.415044000537408 Functional Loss - CCDC183 ENSG00000213213 CDS Human protein_coding chr9:139697158 chr9:139697161 nonsynonymous SNV 0.011 3 24 hm5C_associated_SNPs_92018 0 0 1 0 2 CCDC183 chr9:139697116 3'AG 139697116 Downstream 46bp
chr9 139697161 139697161 1 + G A KIRC 139697158 + 139697138 139697178 41 AGCTGGACAAGCTGCAGAACCTCGTGGTCAACTACTGCTCA AGCTGGACAAGCTGCAGAACCTCATGGTCAACTACTGCTCA < 41bp 0.707522000268704 0.450705873323023 0.04400611 0.044864595 prediction 0.415044000537408 Functional Loss - CCDC183 ENSG00000213213 CDS Human protein_coding chr9:139697158 chr9:139697161 nonsynonymous SNV 0.011 3 24 hm5C_associated_SNPs_92018 0 0 1 0 2 CCDC183 chr9:139697238 5'GT 139697238 Upstream 78bp
chr9 139697160 139697160 1 + C T LUAD 139697158 + 139697138 139697178 41 AGCTGGACAAGCTGCAGAACCTCGTGGTCAACTACTGCTCA AGCTGGACAAGCTGCAGAACCTTGTGGTCAACTACTGCTCA < 41bp 0.707522000268704 0.42935851641627 0.04400611 0.02265507 prediction 0.415044000537408 Functional Loss - CCDC183 ENSG00000213213 CDS Human protein_coding chr9:139697158 chr9:139697160 synonymous SNV . 0 23 hm5C_associated_SNPs_92019 0 0 1 0 2 CCDC183 chr9:139697116 3'AG 139697116 Downstream 45bp
chr9 139697160 139697160 1 + C T LUAD 139697158 + 139697138 139697178 41 AGCTGGACAAGCTGCAGAACCTCGTGGTCAACTACTGCTCA AGCTGGACAAGCTGCAGAACCTTGTGGTCAACTACTGCTCA < 41bp 0.707522000268704 0.42935851641627 0.04400611 0.02265507 prediction 0.415044000537408 Functional Loss - CCDC183 ENSG00000213213 CDS Human protein_coding chr9:139697158 chr9:139697160 synonymous SNV . 0 23 hm5C_associated_SNPs_92019 0 0 1 0 2 CCDC183 chr9:139697238 5'GT 139697238 Upstream 79bp
chr5 121786272 121786272 1 - C A LUAD 121786274 - 121786254 121786294 41 TACAGAATCATCATCTGCATCTGGAGATTTCCACTGGGACT TACAGAATCATCATCTGCATCTTGAGATTTCCACTGGGACT < 41bp 0.903676799993229 0.696155082297724 0.8311261 0.34400156 prediction 0.41504343539101 Functional Loss - SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121786274 chr5:121786272 nonsynonymous SNV 0.826 1 23 hm5C_associated_SNPs_92021 0 0 0 0 2 SNCAIP chr5:121786242 5'GT 121786242 Upstream 31bp
chr5 121786272 121786272 1 - C A LUAD 121786274 - 121786254 121786294 41 TACAGAATCATCATCTGCATCTGGAGATTTCCACTGGGACT TACAGAATCATCATCTGCATCTTGAGATTTCCACTGGGACT < 41bp 0.903676799993229 0.696155082297724 0.8311261 0.34400156 prediction 0.41504343539101 Functional Loss - SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121786274 chr5:121786272 nonsynonymous SNV 0.826 1 23 hm5C_associated_SNPs_92021 0 0 0 0 2 SNCAIP chr5:121786361 3'AG 121786361 Downstream 90bp
chr16 1557052 1557052 1 + G A UCEC 1557049 + 1557029 1557069 41 ATGTGCCTGGCTGTTAACACCACGGTGAGCCGGGAGAGGTC ATGTGCCTGGCTGTTAACACCACAGTGAGCCGGGAGAGGTC < 41bp 0.81659846584913 0.609076977180477 0.79256654 0.6865998 prediction 0.415042977337306 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1557049 chr16:1557052 synonymous SNV . 0 24 hm5C_associated_SNPs_92022 0 0 1 0 2 TELO2 chr16:1556953 3'AG 1556953 Downstream 100bp
chr16 1557052 1557052 1 + G A UCEC 1557049 + 1557029 1557069 41 ATGTGCCTGGCTGTTAACACCACGGTGAGCCGGGAGAGGTC ATGTGCCTGGCTGTTAACACCACAGTGAGCCGGGAGAGGTC < 41bp 0.81659846584913 0.609076977180477 0.79256654 0.6865998 prediction 0.415042977337306 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1557049 chr16:1557052 synonymous SNV . 0 24 hm5C_associated_SNPs_92022 0 0 1 0 2 TELO2 chr16:1557052 5'GT 1557052 Upstream 1bp
chr7 100865949 100865949 1 + C T UCEC 100865946 + 100865926 100865966 41 GCTGCCCGGCAGCGTCGCATCAACCGGCAGCTGGAGGCCCT GCTGCCCGGCAGCGTCGCATCAATCGGCAGCTGGAGGCCCT < 41bp 0.716922128409439 0.509402613161573 0.06080672 0.016530812 prediction 0.415039030495733 Functional Loss - ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100865946 chr7:100865949 synonymous SNV . 0 24 hm5C_associated_SNPs_92023 0 0 1 0 1 ZNHIT1 chr7:100865885 3'AG 100865885 Downstream 65bp
chr2 64113006 64113006 1 + C T COAD 64113004 + 64112984 64113024 41 CATGGAAGTCACAAATAAAACACGTGCAGATGTAAAGGTAA CATGGAAGTCACAAATAAAACATGTGCAGATGTAAAGGTAA < 41bp 0.70751883138004 0.431448900919222 0.11947021 0.09234545 prediction 0.415037662760081 Functional Loss - UGP2 ENSG00000169764 CDS Human protein_coding chr2:64113004 chr2:64113006 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_92024 0 0 1 0 1 UGP2 chr2:64113020 5'GT 64113020 Upstream 15bp
chr11 75282867 75282867 1 + G A HNSC 75282864 + 75282844 75282884 41 GGCCTGACTGAGGCCATTGACAAGAACAAGGCCGACTTGTC GGCCTGACTGAGGCCATTGACAAAAACAAGGCCGACTTGTC < 41bp 0.784803755136921 0.577285531994689 0.8145704 0.47379 prediction 0.415036446284463 Functional Loss - SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75282864 chr11:75282867 synonymous SNV . 0 24 hm5C_associated_SNPs_92025 0 0 1 0 1 SERPINH1 chr11:75282826 3'AG 75282826 Downstream 42bp
chr1 25611225 25611225 1 + G T COAD 25611223 + 25611203 25611243 41 CTTCCTGAGCCAGTTCCCTTCTGGGAAGGTGGTCATCACAC CTTCCTGAGCCAGTTCCCTTCTTGGAAGGTGGTCATCACAC < 41bp 0.915675233960728 0.708160851492168 0.64762723 0.17039642 prediction 0.415028764937119 Functional Loss - RHD ENSG00000187010 CDS Human protein_coding chr1:25611223 chr1:25611225 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_92029 0 0 0 0 1 RHD chr1:25611250 5'GT 25611250 Upstream 26bp
chr17 76200946 76200946 1 + C T UCEC 76200943 + 76200923 76200963 41 ATGGTAGACCAGGTGACCCGCAGCGTTGCGTTTGTCCAGAA ATGGTAGACCAGGTGACCCGCAGTGTTGCGTTTGTCCAGAA < 41bp 0.750393846999551 0.542880931901349 0.41348678 0.35988003 prediction 0.415025830196402 Functional Loss - AFMID ENSG00000183077 CDS Human protein_coding chr17:76200943 chr17:76200946 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_92030 0 0 1 0 2 AFMID chr17:76200909 3'AG 76200909 Downstream 38bp
chr17 76200946 76200946 1 + C T UCEC 76200943 + 76200923 76200963 41 ATGGTAGACCAGGTGACCCGCAGCGTTGCGTTTGTCCAGAA ATGGTAGACCAGGTGACCCGCAGTGTTGCGTTTGTCCAGAA < 41bp 0.750393846999551 0.542880931901349 0.41348678 0.35988003 prediction 0.415025830196402 Functional Loss - AFMID ENSG00000183077 CDS Human protein_coding chr17:76200943 chr17:76200946 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_92030 0 0 1 0 2 AFMID chr17:76200981 5'GT 76200981 Upstream 36bp
chr11 65480860 65480860 1 + G A LUAD 65480857 + 65480837 65480877 41 AGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCG AGCGGGAAGACCTTGCCAATCCCAGTCCAGATCACACTCCG < 41bp 0.805245053975779 0.597732693530893 0.47817346 0.26577294 prediction 0.415024720889771 Functional Loss - KAT5 ENSG00000172977 CDS Human protein_coding chr11:65480857 chr11:65480860 synonymous SNV . 0 24 hm5C_associated_SNPs_92031 0 0 1 0 1 KAT5 chr11:65480819 3'AG 65480819 Downstream 42bp
chr9 135862790 135862790 1 + G C HNSC 135862786 + 135862766 135862806 41 GGAGCAGGACCAGAACTTGGCCAGGATGGCCCCGGCACCAG GGAGCAGGACCAGAACTTGGCCAGCATGGCCCCGGCACCAG < 41bp 0.707509143742407 0.404865262642603 0.20939738 0.06512168 prediction 0.415018287484814 Functional Loss - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135862786 chr9:135862790 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_92033 0 0 0 0 1 GFI1B chr9:135862806 5'GT 135862806 Upstream 17bp
chr12 13232828 13232828 1 + G C LUAD 13232824 + 13232804 13232844 41 TGGTGGTCAGCAAGCTTAGTCTACGGTGGGCACTAATGGAG TGGTGGTCAGCAAGCTTAGTCTACCGTGGGCACTAATGGAG < 41bp 0.707508463700643 0.417651758454388 0.09083122 0.09674612 prediction 0.415016927401285 Functional Loss - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13232824 chr12:13232828 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_92034 0 0 0 1 1 FAM234B chr12:13232766 3'AG 13232766 Downstream 63bp
chr5 138266343 138266343 1 + G A ESCA 138266340 + 138266320 138266360 41 GATGGAGATGACAGACTTTACCCGGTGAGCAGCACCCCGGC GATGGAGATGACAGACTTTACCCAGTGAGCAGCACCCCGGC < 41bp 0.813590725337006 0.60608487624829 0.9062781 0.33921355 prediction 0.415011698177432 Functional Loss - CTNNA1 ENSG00000044115 CDS Human protein_coding chr5:138266340 chr5:138266343 nonsynonymous SNV 0.972 3 24 hm5C_associated_SNPs_92036 0 0 1 0 1 CTNNA1 chr5:138266343 5'GT 138266343 Upstream 1bp
chr15 76196408 76196408 1 + C T COAD 76196406 + 76196386 76196426 41 GAGGTGGTGGAGCGTGTGCTCACCTTCCTGCCCGCCAAGGC GAGGTGGTGGAGCGTGTGCTCATCTTCCTGCCCGCCAAGGC < 41bp 0.824584006032522 0.617078215395974 0.071742654 0.19001499 prediction 0.415011581273097 Functional Loss - FBXO22 ENSG00000167196 CDS Human protein_coding chr15:76196406 chr15:76196408 nonsynonymous SNV 0.988 2 23 hm5C_associated_SNPs_92037 0 0 1 0 1 FBXO22 chr15:76196444 5'GT 76196444 Upstream 37bp
chr14 23311854 23311854 1 + G T LUSC 23311852 + 23311832 23311872 41 CCTGGCCCATGCCTACTTCCCAGGCCCCAACATTGGAGGAG CCTGGCCCATGCCTACTTCCCATGCCCCAACATTGGAGGAG < 41bp 0.707505703025326 0.343299128003182 0.56086934 0.049069107 prediction 0.415011406050652 Functional Loss - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23311852 chr14:23311854 nonsynonymous SNV 0.988 4 23 hm5C_associated_SNPs_92038 0 0 0 0 1 MMP14 chr14:23311926 5'GT 23311926 Upstream 73bp
chr1 100477024 100477024 1 + G A LGG 100477021 + 100477001 100477041 41 ATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAA ATGTTTTTCAAGTGGCTTTGCTGAGGTTTACTTTGAGAAAA < 41bp 0.786355593230445 0.578852733978913 0.67537737 0.21694976 prediction 0.415005718503063 Functional Loss - SLC35A3 ENSG00000117620 CDS Human protein_coding chr1:100477021 chr1:100477024 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_92042 0 0 1 0 1 SLC35A3 chr1:100477089 5'GT 100477089 Upstream 66bp
chr3 195953981 195953981 1 + G A PRAD 195953978 + 195953958 195953998 41 CGGACTCTGCTCTGGAAGAGCTCGGCACCCACGGTGAGGCC CGGACTCTGCTCTGGAAGAGCTCAGCACCCACGGTGAGGCC < 41bp 0.823169815061351 0.615669347914262 0.39528087 0.26645577 prediction 0.415000934294177 Functional Loss - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195953978 chr3:195953981 synonymous SNV . 0 24 hm5C_associated_SNPs_92044 0 0 1 0 1 SLC51A chr3:195953990 5'GT 195953990 Upstream 10bp
chr5 7873555 7873555 1 + G A GBM 7873552 + 7873532 7873572 41 CCACGGGCACCGGAGACCCACCCGACACAGCCCGCAAGTTT CCACGGGCACCGGAGACCCACCCAACACAGCCCGCAAGTTT < 41bp 0.707490594745764 0.481919096629601 0.026079744 0.04292372 prediction 0.414981189491527 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7873552 chr5:7873555 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_92053 0 0 0 1 3 MTRR chr5:7873486 3'AG 7873486 Downstream 70bp
chr5 7873555 7873555 1 + G A GBM 7873552 + 7873532 7873572 41 CCACGGGCACCGGAGACCCACCCGACACAGCCCGCAAGTTT CCACGGGCACCGGAGACCCACCCAACACAGCCCGCAAGTTT < 41bp 0.707490594745764 0.481919096629601 0.026079744 0.04292372 prediction 0.414981189491527 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7873552 chr5:7873555 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_92053 0 0 0 1 3 MTRR chr5:7873625 5'GT 7873625 Upstream 71bp
chr5 7873555 7873555 1 + G A GBM 7873552 + 7873532 7873572 41 CCACGGGCACCGGAGACCCACCCGACACAGCCCGCAAGTTT CCACGGGCACCGGAGACCCACCCAACACAGCCCGCAAGTTT < 41bp 0.707490594745764 0.481919096629601 0.026079744 0.04292372 prediction 0.414981189491527 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7873552 chr5:7873555 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_92053 0 0 0 1 3 MTRR chr5:7873639 5'GT 7873639 Upstream 85bp
chr5 7873554 7873554 1 + C T UCEC 7873552 + 7873532 7873572 41 CCACGGGCACCGGAGACCCACCCGACACAGCCCGCAAGTTT CCACGGGCACCGGAGACCCACCTGACACAGCCCGCAAGTTT < 41bp 0.707490594745764 0.422084839532712 0.026079744 0.032928616 prediction 0.414981189491527 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7873552 chr5:7873554 synonymous SNV . 0 23 hm5C_associated_SNPs_92054 0 0 0 1 3 MTRR chr5:7873486 3'AG 7873486 Downstream 69bp
chr5 7873554 7873554 1 + C T UCEC 7873552 + 7873532 7873572 41 CCACGGGCACCGGAGACCCACCCGACACAGCCCGCAAGTTT CCACGGGCACCGGAGACCCACCTGACACAGCCCGCAAGTTT < 41bp 0.707490594745764 0.422084839532712 0.026079744 0.032928616 prediction 0.414981189491527 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7873552 chr5:7873554 synonymous SNV . 0 23 hm5C_associated_SNPs_92054 0 0 0 1 3 MTRR chr5:7873625 5'GT 7873625 Upstream 72bp
chr5 7873554 7873554 1 + C T UCEC 7873552 + 7873532 7873572 41 CCACGGGCACCGGAGACCCACCCGACACAGCCCGCAAGTTT CCACGGGCACCGGAGACCCACCTGACACAGCCCGCAAGTTT < 41bp 0.707490594745764 0.422084839532712 0.026079744 0.032928616 prediction 0.414981189491527 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7873552 chr5:7873554 synonymous SNV . 0 23 hm5C_associated_SNPs_92054 0 0 0 1 3 MTRR chr5:7873639 5'GT 7873639 Upstream 86bp
chr12 108013884 108013884 1 + G A UCEC 108013881 + 108013861 108013901 41 ACCATTCAGGAGGAGGAATACACGGAGGAGCTCGTTACCCA ACCATTCAGGAGGAGGAATACACAGAGGAGCTCGTTACCCA < 41bp 0.788855303603181 0.581365685564353 0.40963763 0.115881175 prediction 0.414979236077657 Functional Loss - BTBD11 ENSG00000151136 CDS Human protein_coding chr12:108013881 chr12:108013884 synonymous SNV . 0 24 hm5C_associated_SNPs_92056 0 0 0 0 1 BTBD11 chr12:108013941 5'GT 108013941 Upstream 58bp
chr8 35544191 35544191 1 + G A SKCM 35544188 + 35544168 35544208 41 AATTCTGTGAAGGTCTAAGCCAGGAATCTGAAAACTGCACA AATTCTGTGAAGGTCTAAGCCAGAAATCTGAAAACTGCACA < 41bp 0.765982392249336 0.558495886186396 0.43010658 0.3266728 prediction 0.41497301212588 Functional Loss - UNC5D ENSG00000156687 CDS Human protein_coding chr8:35544188 chr8:35544191 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_92061 0 0 0 0 1 UNC5D chr8:35544227 5'GT 35544227 Upstream 37bp
chr19 50161557 50161557 1 + C T LUAD 50161555 + 50161535 50161575 41 GCTACCGCTACTTCCGCAAGCACGGTCGCAAGCCAGGGGAC GCTACCGCTACTTCCGCAAGCATGGTCGCAAGCCAGGGGAC < 41bp 0.796260152178136 0.588776124985049 0.38244548 0.43939382 prediction 0.414968054386174 Functional Loss - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50161555 chr19:50161557 synonymous SNV . 0 23 hm5C_associated_SNPs_92062 0 0 0 0 1 SCAF1 chr19:50161465 3'AG 50161465 Downstream 93bp
chr9 5233669 5233669 1 + C T UCEC 5233667 + 5233647 5233687 41 TTCACAGAAATGGTGTCAACCTCCAACAACAAAGATGGACA TTCACAGAAATGGTGTCAACCTTCAACAACAAAGATGGACA < 41bp 0.707482880452452 0.431395714561525 0.9623145 0.10476112 prediction 0.414965760904904 Functional Loss - INSL4 ENSG00000120211 CDS Human protein_coding chr9:5233667 chr9:5233669 nonsynonymous SNV 0.009 1 23 hm5C_associated_SNPs_92063 0 0 0 0 1 INSL4 chr9:5233654 3'AG 5233654 Downstream 16bp
chr16 66620984 66620984 1 + C T UCEC 66620981 + 66620961 66621001 41 GAAGTCGGCGATCCATGAATCTCCACTACTTACTTGCTGTG GAAGTCGGCGATCCATGAATCTCTACTACTTACTTGCTGTG < 41bp 0.753017103417622 0.545535412682184 0.93017006 0.89686626 prediction 0.414963381470878 Functional Loss - CMTM2 ENSG00000140932 CDS Human protein_coding chr16:66620981 chr16:66620984 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_92064 0 0 0 0 2 CMTM2 chr16:66620900 3'AG 66620900 Downstream 85bp
chr16 66620984 66620984 1 + C T UCEC 66620981 + 66620961 66621001 41 GAAGTCGGCGATCCATGAATCTCCACTACTTACTTGCTGTG GAAGTCGGCGATCCATGAATCTCTACTACTTACTTGCTGTG < 41bp 0.753017103417622 0.545535412682184 0.93017006 0.89686626 prediction 0.414963381470878 Functional Loss - CMTM2 ENSG00000140932 CDS Human protein_coding chr16:66620981 chr16:66620984 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_92064 0 0 0 0 2 CMTM2 chr16:66621001 5'GT 66621001 Upstream 18bp
chr4 113303701 113303701 1 + A T KIRP 113303697 + 113303677 113303717 41 ATGTGATTGGCGCCGGGTTGCAGCAGTTACTGGTAGGAAGA ATGTGATTGGCGCCGGGTTGCAGCTGTTACTGGTAGGAAGA < 41bp 0.707481563003015 0.403751718279157 0.32843745 0.33834726 prediction 0.41496312600603 Functional Loss - ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113303697 chr4:113303701 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_92065 0 0 1 0 1 ALPK1 chr4:113303708 5'GT 113303708 Upstream 8bp
chr17 48245006 48245006 1 + G A GBM 48245003 + 48244983 48245023 41 CCAGGGACACCCAGACCTGCCCCGGTGGCTCCGCTACACCC CCAGGGACACCCAGACCTGCCCCAGTGGCTCCGCTACACCC < 41bp 0.707476780847646 0.453628948361527 0.34246513 0.100339085 prediction 0.414953561695293 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48245003 chr17:48245006 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_92066 0 0 0 1 2 SGCA chr17:48244943 3'AG 48244943 Downstream 64bp
chr17 48245006 48245006 1 + G A GBM 48245003 + 48244983 48245023 41 CCAGGGACACCCAGACCTGCCCCGGTGGCTCCGCTACACCC CCAGGGACACCCAGACCTGCCCCAGTGGCTCCGCTACACCC < 41bp 0.707476780847646 0.453628948361527 0.34246513 0.100339085 prediction 0.414953561695293 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48245003 chr17:48245006 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_92066 0 0 0 1 2 SGCA chr17:48245097 5'GT 48245097 Upstream 92bp
chr7 44153269 44153269 1 + G A GBM 44153266 + 44153246 44153286 41 GCCCACGCGGAGGGCTACACCCCGAGCGCCAAGACCTGCAA GCCCACGCGGAGGGCTACACCCCAAGCGCCAAGACCTGCAA < 41bp 0.804022484642262 0.596550484074623 0.17673433 0.07992551 prediction 0.41494400113528 Functional Loss - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44153266 chr7:44153269 synonymous SNV . 0 24 hm5C_associated_SNPs_92067 0 0 0 0 1 AEBP1 chr7:44153193 3'AG 44153193 Downstream 77bp
chr17 4800046 4800046 1 + G A UCEC 4800043 + 4800023 4800063 41 GCTCTGTGGAGACGGGCCACCTCGACGGGGTCTTCATGCAC GCTCTGTGGAGACGGGCCACCTCAACGGGGTCTTCATGCAC < 41bp 0.801059286201989 0.593597650239407 0.6833184 0.52938175 prediction 0.414923271925164 Functional Loss - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4800043 chr17:4800046 nonsynonymous SNV 0.982 4 24 hm5C_associated_SNPs_92068 0 0 1 0 2 MINK1 chr17:4799969 3'AG 4799969 Downstream 78bp
chr17 4800046 4800046 1 + G A UCEC 4800043 + 4800023 4800063 41 GCTCTGTGGAGACGGGCCACCTCGACGGGGTCTTCATGCAC GCTCTGTGGAGACGGGCCACCTCAACGGGGTCTTCATGCAC < 41bp 0.801059286201989 0.593597650239407 0.6833184 0.52938175 prediction 0.414923271925164 Functional Loss - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4800043 chr17:4800046 nonsynonymous SNV 0.982 4 24 hm5C_associated_SNPs_92068 0 0 1 0 2 MINK1 chr17:4800108 5'GT 4800108 Upstream 63bp
chr17 78972195 78972195 1 + C T SKCM 78972192 + 78972172 78972212 41 ATAGAGCTGCCAGAGGTTCCCTCCGAGCCCCTTCCTGAGAA ATAGAGCTGCCAGAGGTTCCCTCTGAGCCCCTTCCTGAGAA < 41bp 0.757771552992572 0.55031056724315 0.8423083 0.28793406 prediction 0.414921971498843 Functional Loss - CHMP6 ENSG00000176108 CDS Human protein_coding chr17:78972192 chr17:78972195 synonymous SNV . 0 24 hm5C_associated_SNPs_92069 0 0 1 0 2 CHMP6 chr17:78972166 3'AG 78972166 Downstream 30bp
chr17 78972195 78972195 1 + C T SKCM 78972192 + 78972172 78972212 41 ATAGAGCTGCCAGAGGTTCCCTCCGAGCCCCTTCCTGAGAA ATAGAGCTGCCAGAGGTTCCCTCTGAGCCCCTTCCTGAGAA < 41bp 0.757771552992572 0.55031056724315 0.8423083 0.28793406 prediction 0.414921971498843 Functional Loss - CHMP6 ENSG00000176108 CDS Human protein_coding chr17:78972192 chr17:78972195 synonymous SNV . 0 24 hm5C_associated_SNPs_92069 0 0 1 0 2 CHMP6 chr17:78972220 5'GT 78972220 Upstream 26bp
chr5 33455121 33455121 1 + C T rs144381018 33455118 + 33455098 33455138 41 GTCTATGGTGGATGTTTATGCTACGGTCCGCCAATAGAAAA GTCTATGGTGGATGTTTATGCTATGGTCCGCCAATAGAAAA < 41bp 0.764488842486667 0.557028311515001 0.012412071 0.024169624 prediction 0.414921061943334 Functional Loss - TARS ENSG00000113407 CDS Human protein_coding chr5:33455118 chr5:33455121 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_92070 0 0 1 0 2 TARS chr5:33455050 3'AG 33455050 Downstream 72bp
chr5 33455121 33455121 1 + C T rs144381018 33455118 + 33455098 33455138 41 GTCTATGGTGGATGTTTATGCTACGGTCCGCCAATAGAAAA GTCTATGGTGGATGTTTATGCTATGGTCCGCCAATAGAAAA < 41bp 0.764488842486667 0.557028311515001 0.012412071 0.024169624 prediction 0.414921061943334 Functional Loss - TARS ENSG00000113407 CDS Human protein_coding chr5:33455118 chr5:33455121 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_92070 0 0 1 0 2 TARS chr5:33455087 3'AG 33455087 Downstream 35bp
chr15 38641708 38641708 1 + T C SKCM 38641707 + 38641687 38641727 41 TATCCAAGGAATGTGGAAGCCTAAAGTCCCAAAATAGGGTA TATCCAAGGAATGTGGAAGCCCAAAGTCCCAAAATAGGGTA < 41bp 0.70745849290054 0.450645631300502 0.37785062 0.8752044 prediction 0.414916985801081 Functional Loss - SPRED1 ENSG00000166068 CDS Human protein_coding chr15:38641707 chr15:38641708 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_92073 0 0 1 0 1 SPRED1 chr15:38641623 3'AG 38641623 Downstream 86bp
chr21 22804480 22804480 1 + G A HNSC 22804477 + 22804457 22804497 41 ATCATAGAGCTGTCGCAGACCACGGCCAAGGTTTCCTTCAA ATCATAGAGCTGTCGCAGACCACAGCCAAGGTTTCCTTCAA < 41bp 0.707457776355087 0.486841887260173 0.11629167 0.027515173 prediction 0.414915552710174 Functional Loss - NCAM2 ENSG00000154654 CDS Human protein_coding chr21:22804477 chr21:22804480 synonymous SNV . 0 24 hm5C_associated_SNPs_92074 0 0 1 0 1 NCAM2 chr21:22804428 3'AG 22804428 Downstream 53bp
chr12 111785395 111785395 1 + G C OV 111785391 + 111785371 111785411 41 GAGCCAGACCTTGATCCAAGCGGGGGTCCTGGAATCCTACC GAGCCAGACCTTGATCCAAGCGGGCGTCCTGGAATCCTACC < 41bp 0.70745772709634 0.412997618722629 0.934754 0.91707945 prediction 0.414915454192679 Functional Loss - CUX2 ENSG00000111249 CDS Human protein_coding chr12:111785391 chr12:111785395 nonsynonymous SNV 0.757 2 25 hm5C_associated_SNPs_92075 0 0 0 0 1 CUX2 chr12:111785328 3'AG 111785328 Downstream 68bp
chr1 116607092 116607092 1 + G A COAD 116607089 + 116607069 116607109 41 TGGAACTTGTTCCATGTTCTCCCGAGTTGGTGGGATTATTG TGGAACTTGTTCCATGTTCTCCCAAGTTGGTGGGATTATTG < 41bp 0.707457294941594 0.471016197529755 0.2910787 0.1277954 prediction 0.414914589883188 Functional Loss - SLC22A15 ENSG00000163393 CDS Human protein_coding chr1:116607089 chr1:116607092 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_92076 0 0 1 0 2 SLC22A15 chr1:116607057 3'AG 116607057 Downstream 36bp
chr1 116607092 116607092 1 + G A COAD 116607089 + 116607069 116607109 41 TGGAACTTGTTCCATGTTCTCCCGAGTTGGTGGGATTATTG TGGAACTTGTTCCATGTTCTCCCAAGTTGGTGGGATTATTG < 41bp 0.707457294941594 0.471016197529755 0.2910787 0.1277954 prediction 0.414914589883188 Functional Loss - SLC22A15 ENSG00000163393 CDS Human protein_coding chr1:116607089 chr1:116607092 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_92076 0 0 1 0 2 SLC22A15 chr1:116607129 5'GT 116607129 Upstream 38bp
chr1 12820790 12820790 1 + C T SKCM 12820787 + 12820767 12820807 41 CCTGAAGCAGAGCACTTATACTTCATCCTACCCCAGACCAC CCTGAAGCAGAGCACTTATACTTTATCCTACCCCAGACCAC < 41bp 0.740943192676566 0.53348665343793 0.094670326 0.14720428 prediction 0.414913078477273 Functional Loss - C1orf158 ENSG00000157330 CDS Human protein_coding chr1:12820787 chr1:12820790 nonsynonymous SNV 0.021 0 24 hm5C_associated_SNPs_92077 0 0 0 0 1 C1orf158 chr1:12820703 3'AG 12820703 Downstream 88bp
chr10 15115168 15115168 1 + G A HNSC 15115165 + 15115145 15115185 41 TATCTTCTGGATCCTGCGAACGAGAAATTAATCAAGAACTA TATCTTCTGGATCCTGCGAACGAAAAATTAATCAAGAACTA < 41bp 0.772260094699052 0.564809047102301 0.44391355 0.11493039 prediction 0.414902095193502 Functional Loss - OLAH ENSG00000152463 CDS Human protein_coding chr10:15115165 chr10:15115168 synonymous SNV . 0 24 hm5C_associated_SNPs_92083 0 0 0 0 1 OLAH chr10:15115086 3'AG 15115086 Downstream 83bp
chr17 12852546 12852546 1 + G A rs149961555 12852543 + 12852523 12852563 41 GTGGTGGATGTGCAGGAGTACTCGGCAGACCCCCACGCAAT GTGGTGGATGTGCAGGAGTACTCAGCAGACCCCCACGCAAT < 41bp 0.822458809123686 0.615011398063257 0.8885815 0.5070633 prediction 0.414894822120857 Functional Loss - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12852543 chr17:12852546 synonymous SNV . 0 24 hm5C_associated_SNPs_92085 0 0 0 0 2 ARHGAP44 chr17:12852457 3'AG 12852457 Downstream 90bp
chr17 12852546 12852546 1 + G A rs149961555 12852543 + 12852523 12852563 41 GTGGTGGATGTGCAGGAGTACTCGGCAGACCCCCACGCAAT GTGGTGGATGTGCAGGAGTACTCAGCAGACCCCCACGCAAT < 41bp 0.822458809123686 0.615011398063257 0.8885815 0.5070633 prediction 0.414894822120857 Functional Loss - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12852543 chr17:12852546 synonymous SNV . 0 24 hm5C_associated_SNPs_92085 0 0 0 0 2 ARHGAP44 chr17:12852568 5'GT 12852568 Upstream 23bp
chr7 36327312 36327312 1 + A T LUAD 36327310 + 36327290 36327330 41 GCCCTGACCCTCCTGGGGAGCGAGAATCCCAGCAAGAATCA GCCCTGACCCTCCTGGGGAGCGTGAATCCCAGCAAGAATCA < 41bp 0.733184427159028 0.525738214608324 0.58639 0.29381776 prediction 0.414892425101408 Functional Loss - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36327310 chr7:36327312 nonsynonymous SNV 0.408 2 23 hm5C_associated_SNPs_92087 0 0 1 0 2 EEPD1 chr7:36327248 3'AG 36327248 Downstream 65bp
chr7 36327312 36327312 1 + A T LUAD 36327310 + 36327290 36327330 41 GCCCTGACCCTCCTGGGGAGCGAGAATCCCAGCAAGAATCA GCCCTGACCCTCCTGGGGAGCGTGAATCCCAGCAAGAATCA < 41bp 0.733184427159028 0.525738214608324 0.58639 0.29381776 prediction 0.414892425101408 Functional Loss - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36327310 chr7:36327312 nonsynonymous SNV 0.408 2 23 hm5C_associated_SNPs_92087 0 0 1 0 2 EEPD1 chr7:36327386 5'GT 36327386 Upstream 75bp
chr11 12696363 12696363 1 + G C rs1135606 12696359 + 12696339 12696379 41 TGCCTCGGACTCGCCGGGCGCTGCGGTGGCTCCCTGGGCCG TGCCTCGGACTCGCCGGGCGCTGCCGTGGCTCCCTGGGCCG < 41bp 0.822753703043733 0.615310657829988 0.7996628 0.3234607 prediction 0.41488609042749 Functional Loss - TEAD1 ENSG00000187079 UTR5 Human protein_coding chr11:12696359 chr11:12696363 . . 0 25 hm5C_associated_SNPs_92089 0 0 1 0 1 TEAD1 chr11:12696381 5'GT 12696381 Upstream 19bp
chr12 104107546 104107546 1 + G T ACC 104107543 + 104107523 104107563 41 CGGGTGATGGCATTGTGTGCCTGGGTAGGTGTCCTTCCCTC CGGGTGATGGCATTGTGTGCCTGTGTAGGTGTCCTTCCCTC < 41bp 0.707441030683754 0.337039714301767 0.77902746 0.051721066 prediction 0.414882061367508 Functional Loss - STAB2 ENSG00000136011 CDS Human protein_coding chr12:104107543 chr12:104107546 stopgain 0.588 1 24 hm5C_associated_SNPs_92091 0 0 0 0 1 STAB2 chr12:104107546 5'GT 104107546 Upstream 1bp
chr3 10127572 10127572 1 + G A SKCM 10127569 + 10127549 10127589 41 TCCTTAGTAGCCGACTGAAACAGGGAGAACACAGCCAGCCT TCCTTAGTAGCCGACTGAAACAGAGAGAACACAGCCAGCCT < 41bp 0.787164260914695 0.579723287070259 0.9432893 0.9179652 prediction 0.414881947688872 Functional Loss - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10127569 chr3:10127572 nonsynonymous SNV 0.130 0 24 hm5C_associated_SNPs_92092 0 0 1 0 2 FANCD2 chr3:10127496 3'AG 10127496 Downstream 77bp
chr3 10127572 10127572 1 + G A SKCM 10127569 + 10127549 10127589 41 TCCTTAGTAGCCGACTGAAACAGGGAGAACACAGCCAGCCT TCCTTAGTAGCCGACTGAAACAGAGAGAACACAGCCAGCCT < 41bp 0.787164260914695 0.579723287070259 0.9432893 0.9179652 prediction 0.414881947688872 Functional Loss - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10127569 chr3:10127572 nonsynonymous SNV 0.130 0 24 hm5C_associated_SNPs_92092 0 0 1 0 2 FANCD2 chr3:10127606 5'GT 10127606 Upstream 35bp
chr2 177054575 177054575 1 + C T COAD 177054573 + 177054553 177054593 41 GGGGCCGCTAGCCCCTCCAGCGCGATCCGCACGAATTTCAG GGGGCCGCTAGCCCCTCCAGCGTGATCCGCACGAATTTCAG < 41bp 0.846180682644276 0.638740002798352 0.3169375 0.68177277 prediction 0.414881359691849 Functional Loss - HOXD1 ENSG00000128645 CDS Human protein_coding chr2:177054573 chr2:177054575 nonsynonymous SNV 0.988 1 23 hm5C_associated_SNPs_92093 0 0 1 0 1 HOXD1 chr2:177054536 3'AG 177054536 Downstream 40bp
chr7 100187894 100187894 1 - G A SKCM 100187897 - 100187877 100187917 41 TGAGTCTGCGACAGATGCGTCTCCACACGCCTTCCCCATCG TGAGTCTGCGACAGATGCGTCTCTACACGCCTTCCCCATCG < 41bp 0.707439956344492 0.481417353253329 0.96300244 0.9424672 prediction 0.414879912688984 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100187897 chr7:100187894 stopgain 0.929 1 24 hm5C_associated_SNPs_92094 0 0 0 0 2 FBXO24 chr7:100187853 5'GT 100187853 Upstream 42bp
chr7 100187894 100187894 1 - G A SKCM 100187897 - 100187877 100187917 41 TGAGTCTGCGACAGATGCGTCTCCACACGCCTTCCCCATCG TGAGTCTGCGACAGATGCGTCTCTACACGCCTTCCCCATCG < 41bp 0.707439956344492 0.481417353253329 0.96300244 0.9424672 prediction 0.414879912688984 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100187897 chr7:100187894 stopgain 0.929 1 24 hm5C_associated_SNPs_92094 0 0 0 0 2 FBXO24 chr7:100187954 3'AG 100187954 Downstream 61bp
chr1 158061246 158061246 1 + C T LIHC 158061243 + 158061223 158061263 41 AGTGGGGTGCTATCCACGCTCACCATCAACAATGTCATGGA AGTGGGGTGCTATCCACGCTCACTATCAACAATGTCATGGA < 41bp 0.798069929525528 0.590630784267142 0.032058448 0.022313207 prediction 0.414878290516774 Functional Loss - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158061243 chr1:158061246 synonymous SNV . 0 24 hm5C_associated_SNPs_92096 0 0 1 0 1 KIRREL chr1:158061148 3'AG 158061148 Downstream 99bp
chr1 43042734 43042734 1 + G T SARC 43042732 + 43042712 43042752 41 GCCCAACAGAAGTTATTAGACAGCACAAAGATGTGCTCTTC GCCCAACAGAAGTTATTAGACATCACAAAGATGTGCTCTTC < 41bp 0.707435683773804 0.364764594215351 0.11187056 0.11966726 prediction 0.414871367547608 Functional Loss - CCDC30 ENSG00000186409 CDS Human protein_coding chr1:43042732 chr1:43042734 nonsynonymous SNV 0.773 2 23 hm5C_associated_SNPs_92099 0 0 0 1 1 CCDC30 chr1:43042691 3'AG 43042691 Downstream 44bp
chr3 152164529 152164529 1 + G A UCEC 152164526 + 152164506 152164546 41 TCAAATCACTGAAGCGACCCCTCGAGGCAACCTTTGACCTG TCAAATCACTGAAGCGACCCCTCAAGGCAACCTTTGACCTG < 41bp 0.707428165164557 0.484727632069774 0.18892449 0.05696851 prediction 0.414856330329114 Functional Loss - MBNL1 ENSG00000152601 CDS Human protein_coding chr3:152164526 chr3:152164529 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_92102 0 0 1 0 2 MBNL1 chr3:152164493 3'AG 152164493 Downstream 37bp
chr3 152164529 152164529 1 + G A UCEC 152164526 + 152164506 152164546 41 TCAAATCACTGAAGCGACCCCTCGAGGCAACCTTTGACCTG TCAAATCACTGAAGCGACCCCTCAAGGCAACCTTTGACCTG < 41bp 0.707428165164557 0.484727632069774 0.18892449 0.05696851 prediction 0.414856330329114 Functional Loss - MBNL1 ENSG00000152601 CDS Human protein_coding chr3:152164526 chr3:152164529 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_92102 0 0 1 0 2 MBNL1 chr3:152164546 5'GT 152164546 Upstream 18bp
chr3 10283891 10283891 1 + C T LAML 10283888 + 10283868 10283908 41 TACAAAGAGGAAAAAGTGGACAGCATTGAGCTCTTTGGCCC TACAAAGAGGAAAAAGTGGACAGTATTGAGCTCTTTGGCCC < 41bp 0.726271911910406 0.518844093040413 0.6504374 0.6534053 prediction 0.414855637739986 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10283888 chr3:10283891 synonymous SNV . 0 24 hm5C_associated_SNPs_92103 0 0 1 0 1 IRAK2 chr3:10283800 3'AG 10283800 Downstream 92bp
chr12 10339082 10339082 1 + C T LUAD 10339079 + 10339059 10339099 41 CTGACGTCCCTGTGCTTCCGCTGCTGCTGTCTGAGCCGCCA CTGACGTCCCTGTGCTTCCGCTGTTGCTGTCTGAGCCGCCA < 41bp 0.707427054645348 0.497437104984659 0.3864276 0.30071253 prediction 0.414854109290697 Functional Loss - TMEM52B ENSG00000165685 CDS Human protein_coding chr12:10339079 chr12:10339082 synonymous SNV . 0 24 hm5C_associated_SNPs_92104 0 0 0 0 1 TMEM52B chr12:10339019 3'AG 10339019 Downstream 64bp
chr2 102984447 102984447 1 + C T COAD 102984445 + 102984425 102984465 41 GAGCTGAACCCAAGGAGTTCCTCGAGAATTGCTTTGCATGA GAGCTGAACCCAAGGAGTTCCTTGAGAATTGCTTTGCATGA < 41bp 0.873514159805741 0.666091927955074 0.90005124 0.20588431 prediction 0.414844463701334 Functional Loss - IL18R1 ENSG00000115604 CDS Human protein_coding chr2:102984445 chr2:102984447 nonsynonymous SNV 0.016 1 23 hm5C_associated_SNPs_92106 0 0 0 0 1 IL18R1 chr2:102984528 5'GT 102984528 Upstream 82bp
chr11 34144032 34144032 1 + G A rs151136899 34144029 + 34144009 34144049 41 AAAGCTGTCTTGAAATTTATCGAGGGCATCTCTGAAAAGAC AAAGCTGTCTTGAAATTTATCGAAGGCATCTCTGAAAAGAC < 41bp 0.707420385440419 0.455483077070395 0.9348391 0.9077689 prediction 0.414840770880838 Functional Loss - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34144029 chr11:34144032 synonymous SNV . 0 24 hm5C_associated_SNPs_92109 0 0 1 0 1 NAT10 chr11:34144006 3'AG 34144006 Downstream 27bp
chr11 34144031 34144031 1 + A T STAD 34144029 + 34144009 34144049 41 AAAGCTGTCTTGAAATTTATCGAGGGCATCTCTGAAAAGAC AAAGCTGTCTTGAAATTTATCGTGGGCATCTCTGAAAAGAC < 41bp 0.707420385440419 0.49555683095406 0.9348391 0.88244164 prediction 0.414840770880838 Functional Loss - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34144029 chr11:34144031 nonsynonymous SNV 0.892 2 23 hm5C_associated_SNPs_92110 0 0 1 0 1 NAT10 chr11:34144006 3'AG 34144006 Downstream 26bp
chr19 11472148 11472148 1 + C T STAD 11472146 + 11472126 11472166 41 GATGCGGCCCTCTGCGCCTACGCGGTCACCTACACAGCGGT GATGCGGCCCTCTGCGCCTACGTGGTCACCTACACAGCGGT < 41bp 0.811281778802677 0.603861956489165 0.7419878 0.8380817 prediction 0.414839644627025 Functional Loss - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11472146 chr19:11472148 nonsynonymous SNV 0.969 2 23 hm5C_associated_SNPs_92111 0 0 1 0 1 PLPPR2 chr19:11472164 5'GT 11472164 Upstream 17bp
chr1 19582531 19582531 1 + C T SKCM 19582528 + 19582508 19582548 41 AAGCTGAAGGACATCCGGAACGCCTGGAAGCACAGCCGGTG AAGCTGAAGGACATCCGGAACGCTTGGAAGCACAGCCGGTG < 41bp 0.731209315135914 0.523790003791005 0.34073615 0.25501823 prediction 0.414838622689818 Functional Loss - MRTO4 ENSG00000053372 CDS Human protein_coding chr1:19582528 chr1:19582531 synonymous SNV . 0 24 hm5C_associated_SNPs_92113 0 0 1 0 2 MRTO4 chr1:19582442 3'AG 19582442 Downstream 90bp
chr1 19582531 19582531 1 + C T SKCM 19582528 + 19582508 19582548 41 AAGCTGAAGGACATCCGGAACGCCTGGAAGCACAGCCGGTG AAGCTGAAGGACATCCGGAACGCTTGGAAGCACAGCCGGTG < 41bp 0.731209315135914 0.523790003791005 0.34073615 0.25501823 prediction 0.414838622689818 Functional Loss - MRTO4 ENSG00000053372 CDS Human protein_coding chr1:19582528 chr1:19582531 synonymous SNV . 0 24 hm5C_associated_SNPs_92113 0 0 1 0 2 MRTO4 chr1:19582545 5'GT 19582545 Upstream 15bp
chr10 95658429 95658429 1 + G T UCEC 95658426 + 95658406 95658446 41 CTTTATTTGTTAAAAAAGTGCAAGACGTCCATGCTGTAGAG CTTTATTTGTTAAAAAAGTGCAATACGTCCATGCTGTAGAG < 41bp 0.707411761379441 0.320390512213856 0.29355142 0.05446729 prediction 0.414823522758882 Functional Loss - SLC35G1 ENSG00000176273 CDS Human protein_coding chr10:95658426 chr10:95658429 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_92117 0 0 1 0 2 SLC35G1 chr10:95658331 3'AG 95658331 Downstream 99bp
chr10 95658429 95658429 1 + G T UCEC 95658426 + 95658406 95658446 41 CTTTATTTGTTAAAAAAGTGCAAGACGTCCATGCTGTAGAG CTTTATTTGTTAAAAAAGTGCAATACGTCCATGCTGTAGAG < 41bp 0.707411761379441 0.320390512213856 0.29355142 0.05446729 prediction 0.414823522758882 Functional Loss - SLC35G1 ENSG00000176273 CDS Human protein_coding chr10:95658426 chr10:95658429 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_92117 0 0 1 0 2 SLC35G1 chr10:95658508 5'GT 95658508 Upstream 80bp
chr14 71455319 71455319 1 + C T STAD 71455316 + 71455296 71455336 41 GCGAGGAGGCAGTGTCATTTCGCCGTGAACGCAGCACATTT GCGAGGAGGCAGTGTCATTTCGCTGTGAACGCAGCACATTT < 41bp 0.733294335679158 0.52588759875545 0.4589849 0.19005749 prediction 0.414813473847416 Functional Loss - PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71455316 chr14:71455319 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_92121 0 0 0 0 2 PCNX1 chr14:71455284 3'AG 71455284 Downstream 36bp
chr14 71455319 71455319 1 + C T STAD 71455316 + 71455296 71455336 41 GCGAGGAGGCAGTGTCATTTCGCCGTGAACGCAGCACATTT GCGAGGAGGCAGTGTCATTTCGCTGTGAACGCAGCACATTT < 41bp 0.733294335679158 0.52588759875545 0.4589849 0.19005749 prediction 0.414813473847416 Functional Loss - PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71455316 chr14:71455319 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_92121 0 0 0 0 2 PCNX1 chr14:71455416 5'GT 71455416 Upstream 98bp
chr10 116050066 116050066 1 + G T COAD 116050064 + 116050044 116050084 41 ATGAGGGCAGCTGCGTCCTGCAGAATGGGAGCTACCGCTGC ATGAGGGCAGCTGCGTCCTGCATAATGGGAGCTACCGCTGC < 41bp 0.707406246568221 0.347324964113738 0.40124252 0.2549106 prediction 0.414812493136442 Functional Loss - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116050064 chr10:116050066 nonsynonymous SNV 0.785 1 23 hm5C_associated_SNPs_92122 0 0 0 0 2 VWA2 chr10:116049999 3'AG 116049999 Downstream 68bp
chr10 116050066 116050066 1 + G T COAD 116050064 + 116050044 116050084 41 ATGAGGGCAGCTGCGTCCTGCAGAATGGGAGCTACCGCTGC ATGAGGGCAGCTGCGTCCTGCATAATGGGAGCTACCGCTGC < 41bp 0.707406246568221 0.347324964113738 0.40124252 0.2549106 prediction 0.414812493136442 Functional Loss - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116050064 chr10:116050066 nonsynonymous SNV 0.785 1 23 hm5C_associated_SNPs_92122 0 0 0 0 2 VWA2 chr10:116050124 5'GT 116050124 Upstream 59bp
chr7 102065493 102065493 1 + A C ESCA 102065492 + 102065472 102065512 41 CCCAAGGAGCAGGGGTCCAGCAGCTCTGCGGAGGCATCTGG CCCAAGGAGCAGGGGTCCAGCCGCTCTGCGGAGGCATCTGG < 41bp 0.707403041143199 0.445498339892422 0.541722 0.23983166 prediction 0.414806082286399 Functional Loss - PRKRIP1 ENSG00000128563 CDS Human protein_coding chr7:102065492 chr7:102065493 nonsynonymous SNV 0.619 0 22 hm5C_associated_SNPs_92127 0 0 1 0 1 PRKRIP1 chr7:102065461 3'AG 102065461 Downstream 33bp
chr17 58022845 58022845 1 + C T KIRC 58022843 + 58022823 58022863 41 TGAACCAAAAATCCGATCACCTCGAAGATTTATTGGCAGCC TGAACCAAAAATCCGATCACCTTGAAGATTTATTGGCAGCC < 41bp 0.707398255126361 0.402037983334883 0.87182736 0.064015836 prediction 0.414796510252722 Functional Loss - RPS6KB1 ENSG00000108443;ENSG00000267318 CDS Human other chr17:58022843 chr17:58022845 stopgain 1.000 1 23 hm5C_associated_SNPs_92128 0 0 0 0 1 RPS6KB1 chr17:58022879 5'GT 58022879 Upstream 35bp
chr5 148709278 148709278 1 + G T LUAD 148709275 + 148709255 148709295 41 AACCGAGCCGAGGAGGATGCCCGGAGGTACTTGGTAGAAAA AACCGAGCCGAGGAGGATGCCCGTAGGTACTTGGTAGAAAA < 41bp 0.707397961975813 0.313209155211596 0.8518452 0.07051593 prediction 0.414795923951625 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148709275 chr5:148709278 synonymous SNV . 0 24 hm5C_associated_SNPs_92130 0 0 1 0 1 AFAP1L1 chr5:148709229 3'AG 148709229 Downstream 50bp
chr17 61770916 61770916 1 + G A READ 61770913 + 61770893 61770933 41 GGTTCTCTCTTTCCAGGAGCCTGGGCTGCACTGTGGTGGAG GGTTCTCTCTTTCCAGGAGCCTGAGCTGCACTGTGGTGGAG < 41bp 0.707393529854369 0.465162713275536 0.8880068 0.4261385 prediction 0.414787059708738 Functional Loss - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61770913 chr17:61770916 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_92133 0 0 1 0 1 MAP3K3 chr17:61770909 3'AG 61770909 Downstream 8bp
chr2 7137100 7137100 1 + G A UCEC 7137097 + 7137077 7137117 41 GGCCCACCTGGGACCTGGCCCTCGACCCGCTGGTGTCTTGC GGCCCACCTGGGACCTGGCCCTCAACCCGCTGGTGTCTTGC < 41bp 0.808811757742895 0.601420820246551 0.8854029 0.20595428 prediction 0.414781874992689 Functional Loss - RNF144A ENSG00000151692 CDS Human protein_coding chr2:7137097 chr2:7137100 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_92134 0 0 1 0 2 RNF144A chr2:7137047 3'AG 7137047 Downstream 54bp
chr2 7137100 7137100 1 + G A UCEC 7137097 + 7137077 7137117 41 GGCCCACCTGGGACCTGGCCCTCGACCCGCTGGTGTCTTGC GGCCCACCTGGGACCTGGCCCTCAACCCGCTGGTGTCTTGC < 41bp 0.808811757742895 0.601420820246551 0.8854029 0.20595428 prediction 0.414781874992689 Functional Loss - RNF144A ENSG00000151692 CDS Human protein_coding chr2:7137097 chr2:7137100 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_92134 0 0 1 0 2 RNF144A chr2:7137192 5'GT 7137192 Upstream 93bp
chrX 136649910 136649910 1 + G T UCEC 136649908 + 136649888 136649928 41 GATCCACAAGAGGACCCACACAGGTAAGGGAAAAAAGCAGG GATCCACAAGAGGACCCACACATGTAAGGGAAAAAAGCAGG < 41bp 0.707390351333238 0.350104486548905 0.6639059 0.2482675 prediction 0.414780702666477 Functional Loss - ZIC3 ENSG00000156925 CDS Human protein_coding chrX:136649908 chrX:136649910 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_92135 0 0 0 0 1 ZIC3 chrX:136649910 5'GT 136649910 Upstream 1bp
chr19 55085838 55085838 1 + C T BLCA 55085836 + 55085816 55085856 41 TCCAGGGAAGTCCTGTGACCCTCAGGTGTCAGGGGAGCCTT TCCAGGGAAGTCCTGTGACCCTTAGGTGTCAGGGGAGCCTT < 41bp 0.707390089754896 0.435005088431661 0.046012938 0.008000255 prediction 0.414780179509792 Functional Loss - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55085836 chr19:55085838 synonymous SNV . 0 23 hm5C_associated_SNPs_92137 0 0 0 0 1 LILRA2 chr19:55085768 3'AG 55085768 Downstream 71bp
chr20 61867797 61867797 1 + G T LUSC 61867795 + 61867775 61867815 41 TGCTGCCGGCTTCTTCCACACAGGTCAGTCCCGGGCGGGGG TGCTGCCGGCTTCTTCCACACATGTCAGTCCCGGGCGGGGG < 41bp 0.707384531064274 0.348007537681598 0.3544791 0.17468038 prediction 0.414769062128548 Functional Loss - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61867795 chr20:61867797 nonsynonymous SNV 0.584 4 23 hm5C_associated_SNPs_92142 0 0 0 0 1 BIRC7 chr20:61867797 5'GT 61867797 Upstream 1bp
chr16 67685742 67685742 1 + G A HNSC 67685739 + 67685719 67685759 41 GCTGCTGCAAGATGCCTTCACTAGGCTCAGGTAGGCTGGAT GCTGCTGCAAGATGCCTTCACTAAGCTCAGGTAGGCTGGAT < 41bp 0.707383923367653 0.45632554735712 0.83456737 0.43396908 prediction 0.414767846735306 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67685739 chr16:67685742 nonsynonymous SNV 0.949 1 24 hm5C_associated_SNPs_92143 0 0 0 0 1 CARMIL2 chr16:67685748 5'GT 67685748 Upstream 7bp
chrX 155235090 155235090 1 + G T UCEC 155235088 + 155235068 155235108 41 GGTAGAGGAGGAGCGTTATACAGGCCAGTGGAGTGAGTGGA GGTAGAGGAGGAGCGTTATACATGCCAGTGGAGTGAGTGGA < 41bp 0.707380805118811 0.344911538016191 0.7414412 0.25638717 prediction 0.414761610237622 Functional Loss - IL9R ENSG00000124334 CDS Human protein_coding chrX:155235088 chrX:155235090 nonsynonymous SNV 0.183 1 23 hm5C_associated_SNPs_92146 0 0 0 0 1 IL9R chrX:155235144 5'GT 155235144 Upstream 55bp
chr19 39589686 39589686 1 + G A SARC 39589683 + 39589663 39589703 41 GGGCCCACTGGAGTCCCCGTCTGGCTGTGTTTGGAGACCTG GGGCCCACTGGAGTCCCCGTCTGACTGTGTTTGGAGACCTG < 41bp 0.707380313328082 0.451595505900499 0.36152455 0.19958234 prediction 0.414760626656164 Functional Loss - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39589683 chr19:39589686 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_92148 0 0 0 0 2 ACP7 chr19:39589600 3'AG 39589600 Downstream 87bp
chr19 39589686 39589686 1 + G A SARC 39589683 + 39589663 39589703 41 GGGCCCACTGGAGTCCCCGTCTGGCTGTGTTTGGAGACCTG GGGCCCACTGGAGTCCCCGTCTGACTGTGTTTGGAGACCTG < 41bp 0.707380313328082 0.451595505900499 0.36152455 0.19958234 prediction 0.414760626656164 Functional Loss - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39589683 chr19:39589686 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_92148 0 0 0 0 2 ACP7 chr19:39589782 5'GT 39589782 Upstream 97bp
chr22 50636393 50636393 1 + G A LUSC 50636390 + 50636370 50636410 41 ACCTACATGCTGCGCCAGGCCGCGCGGCGCCTCGAGCTGCC ACCTACATGCTGCGCCAGGCCGCACGGCGCCTCGAGCTGCC < 41bp 0.817969327208344 0.610592443022934 0.15931872 0.06872624 prediction 0.41475376837082 Functional Loss - TRABD ENSG00000170638 CDS Human protein_coding chr22:50636390 chr22:50636393 synonymous SNV . 0 24 hm5C_associated_SNPs_92149 0 0 1 0 1 TRABD chr22:50636424 5'GT 50636424 Upstream 32bp
chr6 109557922 109557922 1 + G A UCEC 109557919 + 109557899 109557939 41 AGTGCGACAGCCTTCTGTATCCCGAGCTCTTGCCCAGTGTC AGTGCGACAGCCTTCTGTATCCCAAGCTCTTGCCCAGTGTC < 41bp 0.834397197402009 0.627021122991704 0.6018759 0.13672242 prediction 0.41475214882061 Functional Loss - C6orf183 ENSG00000243587 intronic Human other chr6:109557919 chr6:109557922 . . 0 24 hm5C_associated_SNPs_92152 0 0 0 0 1 C6orf183 chr6:109557983 5'GT 109557983 Upstream 62bp
chr4 74735403 74735403 1 + G T ACC 74735399 + 74735379 74735419 41 TCCCTAGGAGCGTCCGTGGCCACTGAACTGCGCTGCCAGTG TCCCTAGGAGCGTCCGTGGCCACTTAACTGCGCTGCCAGTG < 41bp 0.714745343175167 0.507371165117993 0.2938401 0.20644405 prediction 0.414748356114347 Functional Loss - CXCL1 ENSG00000163739 CDS Human protein_coding chr4:74735399 chr4:74735403 stopgain 0.026 1 25 hm5C_associated_SNPs_92154 0 0 0 0 2 CXCL1 chr4:74735363 3'AG 74735363 Downstream 41bp
chr4 74735403 74735403 1 + G T ACC 74735399 + 74735379 74735419 41 TCCCTAGGAGCGTCCGTGGCCACTGAACTGCGCTGCCAGTG TCCCTAGGAGCGTCCGTGGCCACTTAACTGCGCTGCCAGTG < 41bp 0.714745343175167 0.507371165117993 0.2938401 0.20644405 prediction 0.414748356114347 Functional Loss - CXCL1 ENSG00000163739 CDS Human protein_coding chr4:74735399 chr4:74735403 stopgain 0.026 1 25 hm5C_associated_SNPs_92154 0 0 0 0 2 CXCL1 chr4:74735386 3'AG 74735386 Downstream 18bp
chr10 131506165 131506165 1 + G A SKCM 131506162 + 131506142 131506182 41 TGTTCTCACTTTTGCAGTGCCGTGGAGGTCCCAGCCCCCGC TGTTCTCACTTTTGCAGTGCCGTAGAGGTCCCAGCCCCCGC < 41bp 0.707367765821161 0.458731256378419 0.70991015 0.43188655 prediction 0.414735531642321 Functional Loss - MGMT ENSG00000170430 CDS Human protein_coding chr10:131506162 chr10:131506165 synonymous SNV . 0 24 hm5C_associated_SNPs_92158 0 0 1 0 1 MGMT chr10:131506159 3'AG 131506159 Downstream 7bp
chrX 150908076 150908076 1 + G A UCEC 150908073 + 150908053 150908093 41 ATCATCAGAGAATGGGCCAACAAGAATTTCCGAGAGGAGGA ATCATCAGAGAATGGGCCAACAAAAATTTCCGAGAGGAGGA < 41bp 0.794740634085596 0.587375150780307 0.4521038 0.52672035 prediction 0.414730966610579 Functional Loss - CNGA2 ENSG00000183862 CDS Human protein_coding chrX:150908073 chrX:150908076 synonymous SNV . 0 24 hm5C_associated_SNPs_92159 0 0 0 0 1 CNGA2 chrX:150908034 3'AG 150908034 Downstream 43bp
chr1 112305598 112305598 1 + G T UCEC 112305596 + 112305576 112305616 41 ATATGATGATGAGAATTGCCCAGAAATGTAATATCAACCTT ATATGATGATGAGAATTGCCCATAAATGTAATATCAACCTT < 41bp 0.707364898919313 0.380279433752116 0.12838489 0.031547606 prediction 0.414729797838626 Functional Loss - DDX20 ENSG00000064703 CDS Human protein_coding chr1:112305596 chr1:112305598 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_92161 0 0 1 0 2 DDX20 chr1:112305528 3'AG 112305528 Downstream 71bp
chr1 112305598 112305598 1 + G T UCEC 112305596 + 112305576 112305616 41 ATATGATGATGAGAATTGCCCAGAAATGTAATATCAACCTT ATATGATGATGAGAATTGCCCATAAATGTAATATCAACCTT < 41bp 0.707364898919313 0.380279433752116 0.12838489 0.031547606 prediction 0.414729797838626 Functional Loss - DDX20 ENSG00000064703 CDS Human protein_coding chr1:112305596 chr1:112305598 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_92161 0 0 1 0 2 DDX20 chr1:112305629 5'GT 112305629 Upstream 32bp
chr2 71371643 71371643 1 + C T CESC 71371641 + 71371621 71371661 41 TTCTTAAAATTGGATGCCCTCTCAAACTTCCACTTTATCCC TTCTTAAAATTGGATGCCCTCTTAAACTTCCACTTTATCCC < 41bp 0.70736250406739 0.399545295762022 0.31007272 0.17813137 prediction 0.414725008134779 Functional Loss - MPHOSPH10 ENSG00000124383 CDS Human protein_coding chr2:71371641 chr2:71371643 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_92163 0 0 1 0 2 MPHOSPH10 chr2:71371558 3'AG 71371558 Downstream 86bp
chr2 71371643 71371643 1 + C T CESC 71371641 + 71371621 71371661 41 TTCTTAAAATTGGATGCCCTCTCAAACTTCCACTTTATCCC TTCTTAAAATTGGATGCCCTCTTAAACTTCCACTTTATCCC < 41bp 0.70736250406739 0.399545295762022 0.31007272 0.17813137 prediction 0.414725008134779 Functional Loss - MPHOSPH10 ENSG00000124383 CDS Human protein_coding chr2:71371641 chr2:71371643 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_92163 0 0 1 0 2 MPHOSPH10 chr2:71371668 5'GT 71371668 Upstream 26bp
chr16 67915025 67915025 1 + C T COAD 67915022 + 67915002 67915042 41 AGCACAAGAGCCTGGCCTTCCACCGACCACCATATCACCTG AGCACAAGAGCCTGGCCTTCCACTGACCACCATATCACCTG < 41bp 0.735914478820912 0.528561825850187 0.1342772 0.061972678 prediction 0.414705305941449 Functional Loss - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67915022 chr16:67915025 stopgain 0.998 1 24 hm5C_associated_SNPs_92170 0 0 1 0 2 EDC4 chr16:67914979 3'AG 67914979 Downstream 47bp
chr16 67915025 67915025 1 + C T COAD 67915022 + 67915002 67915042 41 AGCACAAGAGCCTGGCCTTCCACCGACCACCATATCACCTG AGCACAAGAGCCTGGCCTTCCACTGACCACCATATCACCTG < 41bp 0.735914478820912 0.528561825850187 0.1342772 0.061972678 prediction 0.414705305941449 Functional Loss - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67915022 chr16:67915025 stopgain 0.998 1 24 hm5C_associated_SNPs_92170 0 0 1 0 2 EDC4 chr16:67915083 5'GT 67915083 Upstream 59bp
chr2 95846874 95846874 1 + G T HNSC 95846871 + 95846851 95846891 41 GGGAAACTAAGCCTGAGATTCACGATGCTTCAGACAAAAAA GGGAAACTAAGCCTGAGATTCACTATGCTTCAGACAAAAAA < 41bp 0.707349406372111 0.324846765287564 0.08912942 0.05385104 prediction 0.414698812744223 Functional Loss - ZNF2 ENSG00000163067 CDS Human other chr2:95846871 chr2:95846874 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_92172 0 0 0 0 1 ZNF2 chr2:95846848 3'AG 95846848 Downstream 27bp
chr2 95846873 95846873 1 + C T HNSC 95846871 + 95846851 95846891 41 GGGAAACTAAGCCTGAGATTCACGATGCTTCAGACAAAAAA GGGAAACTAAGCCTGAGATTCATGATGCTTCAGACAAAAAA < 41bp 0.707349406372111 0.435284139182614 0.08912942 0.16196314 prediction 0.414698812744223 Functional Loss - ZNF2 ENSG00000163067 CDS Human other chr2:95846871 chr2:95846873 synonymous SNV . 0 23 hm5C_associated_SNPs_92173 0 0 0 0 1 ZNF2 chr2:95846848 3'AG 95846848 Downstream 26bp
chr3 195955119 195955119 1 + T C LIHC 195955118 + 195955098 195955138 41 CCCTGCTGCTGCTGCTGCCCCTGCTGTCCACGGCTGCTGCT CCCTGCTGCTGCTGCTGCCCCCGCTGTCCACGGCTGCTGCT < 41bp 0.707347811120627 0.44989306633449 0.14867046 0.09634626 prediction 0.414695622241253 Functional Loss - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195955118 chr3:195955119 nonsynonymous SNV 0.888 4 22 hm5C_associated_SNPs_92174 0 0 1 0 1 SLC51A chr3:195955144 5'GT 195955144 Upstream 26bp
chr9 139250804 139250804 1 + G A rs79557901 139250801 + 139250781 139250821 41 TGGCCCCCCGCAGCCCAGCCCTCGATGACGGCCTCGCCCCA TGGCCCCCCGCAGCCCAGCCCTCAATGACGGCCTCGCCCCA < 41bp 0.820997992046459 0.613650601031705 0.9089283 0.3365475 prediction 0.414694782029507 Functional Loss - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139250801 chr9:139250804 synonymous SNV . 0 24 hm5C_associated_SNPs_92175 0 0 0 0 1 GPSM1 chr9:139250794 3'AG 139250794 Downstream 11bp
chr17 37865600 37865600 1 + C T UCEC 37865597 + 37865577 37865617 41 TGAAAGGAGGGGTCTTGATCCAGCGGAACCCCCAGCTCTGC TGAAAGGAGGGGTCTTGATCCAGTGGAACCCCCAGCTCTGC < 41bp 0.709657127504597 0.502313682440192 0.9273446 0.9130182 prediction 0.41468689012881 Functional Loss - ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37865597 chr17:37865600 nonsynonymous SNV 0.979 3 24 hm5C_associated_SNPs_92178 0 0 1 0 1 ERBB2 chr17:37865571 3'AG 37865571 Downstream 30bp
chr9 131454979 131454979 1 + C T STAD 131454976 + 131454956 131454996 41 GGGAGGAAGATGAAGAGGCACTGCATTATTTGACCAGAGTT GGGAGGAAGATGAAGAGGCACTGTATTATTTGACCAGAGTT < 41bp 0.707338574053692 0.474980098672559 0.3396022 0.21532673 prediction 0.414677148107384 Functional Loss - SET ENSG00000119335 CDS Human protein_coding chr9:131454976 chr9:131454979 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_92180 0 0 1 0 1 SET chr9:131455044 5'GT 131455044 Upstream 66bp
chr11 10503698 10503698 1 + G T LIHC 10503694 + 10503674 10503714 41 AGTATGCGCGGCTCGCCTACCACCGCTTCCCGCGGATCACA AGTATGCGCGGCTCGCCTACCACCTCTTCCCGCGGATCACA < 41bp 0.717017947928551 0.509682589764727 0.24984995 0.164188 prediction 0.414670716327648 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10503694 chr11:10503698 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_92182 0 0 0 0 2 AMPD3 chr11:10503610 3'AG 10503610 Downstream 89bp
chr11 10503698 10503698 1 + G T LIHC 10503694 + 10503674 10503714 41 AGTATGCGCGGCTCGCCTACCACCGCTTCCCGCGGATCACA AGTATGCGCGGCTCGCCTACCACCTCTTCCCGCGGATCACA < 41bp 0.717017947928551 0.509682589764727 0.24984995 0.164188 prediction 0.414670716327648 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10503694 chr11:10503698 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_92182 0 0 0 0 2 AMPD3 chr11:10503772 5'GT 10503772 Upstream 75bp
chr19 10365278 10365278 1 + C T UVM 10365275 + 10365255 10365295 41 CTCCCCGCAGGCTGGACATACTGCACCAGGTTGCTATGTGG CTCCCCGCAGGCTGGACATACTGTACCAGGTTGCTATGTGG < 41bp 0.707334231900742 0.479946979483269 0.23137122 0.17446423 prediction 0.414668463801483 Functional Loss - MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10365275 chr19:10365278 nonsynonymous SNV 0.644 3 24 hm5C_associated_SNPs_92185 0 0 1 0 2 MRPL4 chr19:10365265 3'AG 10365265 Downstream 14bp
chr19 10365278 10365278 1 + C T UVM 10365275 + 10365255 10365295 41 CTCCCCGCAGGCTGGACATACTGCACCAGGTTGCTATGTGG CTCCCCGCAGGCTGGACATACTGTACCAGGTTGCTATGTGG < 41bp 0.707334231900742 0.479946979483269 0.23137122 0.17446423 prediction 0.414668463801483 Functional Loss - MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10365275 chr19:10365278 nonsynonymous SNV 0.644 3 24 hm5C_associated_SNPs_92185 0 0 1 0 2 MRPL4 chr19:10365316 5'GT 10365316 Upstream 39bp
chr20 48884141 48884141 1 + C T rs527552608 48884139 + 48884119 48884159 41 CCCCGCGGGGAGGCCCAAGCCCCGGGGGTGGCGGGGGATCC CCCCGCGGGGAGGCCCAAGCCCTGGGGGTGGCGGGGGATCC < 41bp 0.753669528739759 0.546338732083759 0.4799392 0.36351418 prediction 0.414661593312 Functional Loss - SMIM25 ENSG00000224397 ncRNA_exonic Human lincRNA chr20:48884139 chr20:48884141 . . 0 23 hm5C_associated_SNPs_92186 0 0 0 0 1 SMIM25 chr20:48884200 5'GT 48884200 Upstream 60bp
chr16 30532869 30532869 1 + G A UCEC 30532866 + 30532846 30532886 41 ATGGAGGCTGGCAGAGGTGTCCCGAATGGAATCCCTGCAGA ATGGAGGCTGGCAGAGGTGTCCCAAATGGAATCCCTGCAGA < 41bp 0.70732916286304 0.45851250665445 0.35960093 0.25257856 prediction 0.41465832572608 Functional Loss - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30532866 chr16:30532869 synonymous SNV . 0 24 hm5C_associated_SNPs_92187 0 0 0 0 1 ITGAL chr16:30532813 3'AG 30532813 Downstream 57bp
chr9 92280256 92280256 1 + C T rs12346812 92280254 + 92280234 92280274 41 GCTCTGGAGACTCCTGCTGTCACGTCACCTGGCCCCTCACC GCTCTGGAGACTCCTGCTGTCATGTCACCTGGCCCCTCACC < 41bp 0.707325062678008 0.493081022932064 0.15684518 0.1510027 prediction 0.414650125356015 Functional Loss - UNQ6494 ENSG00000130222;ENSG00000237372 intergenic Human other chr9:92280254 chr9:92280256 . . 0 23 hm5C_associated_SNPs_92190 0 0 0 0 1 UNQ6494 chr9:92280297 5'GT 92280297 Upstream 42bp
chr22 21357280 21357280 1 + G T UCEC 21357276 + 21357256 21357296 41 TGCCAGATCCTCGCGGGCCTCGGAGAATTCCCCCACTGCCA TGCCAGATCCTCGCGGGCCTCGGATAATTCCCCCACTGCCA < 41bp 0.707320456495168 0.489949279473828 0.9140277 0.90776455 prediction 0.414640912990335 Functional Loss - THAP7-AS1 ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21357276 chr22:21357280 . . 0 25 hm5C_associated_SNPs_92193 0 0 1 0 1 THAP7-AS1 chr22:21357207 3'AG 21357207 Downstream 74bp
chr1 11254970 11254970 1 + G A LUAD 11254967 + 11254947 11254987 41 TCAATGGAGTGTACTACCGCCTGGGTGAGCACAATAAGCAC TCAATGGAGTGTACTACCGCCTGAGTGAGCACAATAAGCAC < 41bp 0.783100316429123 0.575782183991296 0.49371573 0.25973153 prediction 0.414636264875654 Functional Loss - ANGPTL7 ENSG00000171819 CDS Human protein_coding chr1:11254967 chr1:11254970 nonsynonymous SNV 0.421 5 24 hm5C_associated_SNPs_92194 0 0 0 0 1 ANGPTL7 chr1:11254911 3'AG 11254911 Downstream 60bp
chr11 6503291 6503291 1 + G T UCEC 6503289 + 6503269 6503309 41 TTCTAGGAGGCCTGTCTGCACAGCTGTGCTGGGAAGCTGAT TTCTAGGAGGCCTGTCTGCACATCTGTGCTGGGAAGCTGAT < 41bp 0.707317503427609 0.360590787326268 0.2102631 0.113181114 prediction 0.414635006855217 Functional Loss - TIMM10B ENSG00000132286;ENSG00000265264 CDS Human other chr11:6503289 chr11:6503291 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_92195 0 0 1 0 1 TIMM10B chr11:6503275 3'AG 6503275 Downstream 17bp
chr6 31691971 31691971 1 + C T SKCM 31691969 + 31691949 31691989 41 TGCTGGGCGCTGGGTTGGTGCTCGGACTGGGAGCTTTGGGC TGCTGGGCGCTGGGTTGGTGCTTGGACTGGGAGCTTTGGGC < 41bp 0.72014646749603 0.512835885220256 0.46987736 0.3761456 prediction 0.414621164551548 Functional Loss - MPIG6B ENSG00000204420 CDS Human protein_coding chr6:31691969 chr6:31691971 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_92200 0 0 0 0 1 MPIG6B chr6:31692009 5'GT 31692009 Upstream 39bp
chr2 231865218 231865218 1 + G T UCEC 231865215 + 231865195 231865235 41 CTCGGGACTGGCAGATGGCGCCAGGGAGAGGACTCCCCAAC CTCGGGACTGGCAGATGGCGCCATGGAGAGGACTCCCCAAC < 41bp 0.707304898547144 0.302810030301703 0.9046402 0.326698 prediction 0.414609797094287 Functional Loss - SPATA3 ENSG00000173699 CDS Human protein_coding chr2:231865215 chr2:231865218 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_92203 0 0 0 0 1 SPATA3 chr2:231865252 5'GT 231865252 Upstream 35bp
chr16 28847379 28847379 1 + G A CESC 28847376 + 28847356 28847396 41 CCCCCCCAAGGCGCGGTGCCCCAGAGTGGGGTGCCTGCACT CCCCCCCAAGGCGCGGTGCCCCAAAGTGGGGTGCCTGCACT < 41bp 0.774089524729476 0.566785213049794 0.8117868 0.54769945 prediction 0.414608623359364 Functional Loss - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28847376 chr16:28847379 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_92204 0 0 1 0 1 ATXN2L chr16:28847443 5'GT 28847443 Upstream 65bp
chr2 234366989 234366989 1 + C T UCEC 234366986 + 234366966 234367006 41 GAGGTGGTCGCCGTGTTCGGCAGCATGCAGATGGCCGTCTC GAGGTGGTCGCCGTGTTCGGCAGTATGCAGATGGCCGTCTC < 41bp 0.754738699728464 0.547434606562937 0.6879184 0.7435305 prediction 0.414608186331054 Functional Loss - DGKD ENSG00000077044 CDS Human protein_coding chr2:234366986 chr2:234366989 synonymous SNV . 0 24 hm5C_associated_SNPs_92205 0 0 1 0 2 DGKD chr2:234366930 3'AG 234366930 Downstream 60bp
chr2 234366989 234366989 1 + C T UCEC 234366986 + 234366966 234367006 41 GAGGTGGTCGCCGTGTTCGGCAGCATGCAGATGGCCGTCTC GAGGTGGTCGCCGTGTTCGGCAGTATGCAGATGGCCGTCTC < 41bp 0.754738699728464 0.547434606562937 0.6879184 0.7435305 prediction 0.414608186331054 Functional Loss - DGKD ENSG00000077044 CDS Human protein_coding chr2:234366986 chr2:234366989 synonymous SNV . 0 24 hm5C_associated_SNPs_92205 0 0 1 0 2 DGKD chr2:234367043 5'GT 234367043 Upstream 55bp
chr1 234509369 234509369 1 + G C rs537066023 234509368 + 234509348 234509388 41 CACCGCCGGTTGGTGGCCTGCGTGACAGTTTCCTCCCGTCG CACCGCCGGTTGGTGGCCTGCCTGACAGTTTCCTCCCGTCG < 41bp 0.844640699897595 0.637338669126933 0.48238453 0.10141492 prediction 0.414604061541324 Functional Loss - COA6 ENSG00000168275 CDS Human protein_coding chr1:234509368 chr1:234509369 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_92206 0 0 1 0 1 COA6 chr1:234509424 5'GT 234509424 Upstream 56bp
chr1 48713023 48713023 1 + G A UCEC 48713020 + 48713000 48713040 41 CCTCCAGCCCCAAGCAGGTCCTGGGGAAAGTTGCTCTGGAG CCTCCAGCCCCAAGCAGGTCCTGAGGAAAGTTGCTCTGGAG < 41bp 0.806706715332382 0.59940786100126 0.9077718 0.38281724 prediction 0.414597708662243 Functional Loss - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48713020 chr1:48713023 stopgain 0.593 0 24 hm5C_associated_SNPs_92208 0 0 1 0 1 SLC5A9 chr1:48713007 3'AG 48713007 Downstream 17bp
chrX 3019216 3019216 1 + T C LUSC 3019215 + 3019195 3019235 41 TCACGGAGGGCATTTGGAAGCTAGGCGAGGGCATGCCCAAC TCACGGAGGGCATTTGGAAGCCAGGCGAGGGCATGCCCAAC < 41bp 0.803871415477157 0.596579232905029 0.7356005 0.8828516 prediction 0.414584365144257 Functional Loss - ARSF ENSG00000062096 CDS Human protein_coding chrX:3019215 chrX:3019216 synonymous SNV . 0 22 hm5C_associated_SNPs_92211 0 0 0 0 2 ARSF chrX:3019128 3'AG 3019128 Downstream 89bp
chrX 3019216 3019216 1 + T C LUSC 3019215 + 3019195 3019235 41 TCACGGAGGGCATTTGGAAGCTAGGCGAGGGCATGCCCAAC TCACGGAGGGCATTTGGAAGCCAGGCGAGGGCATGCCCAAC < 41bp 0.803871415477157 0.596579232905029 0.7356005 0.8828516 prediction 0.414584365144257 Functional Loss - ARSF ENSG00000062096 CDS Human protein_coding chrX:3019215 chrX:3019216 synonymous SNV . 0 22 hm5C_associated_SNPs_92211 0 0 0 0 2 ARSF chrX:3019262 5'GT 3019262 Upstream 47bp
chr17 9605017 9605017 1 + G T COAD 9605013 + 9604993 9605033 41 AACCTGCAAGGTGGGCATTACACAGGTGAGCCTTGCCTTGC AACCTGCAAGGTGGGCATTACACATGTGAGCCTTGCCTTGC < 41bp 0.70824456243709 0.500953165867848 0.42458385 0.27430993 prediction 0.414582793138484 Functional Loss - USP43 ENSG00000154914 CDS Human protein_coding chr17:9605013 chr17:9605017 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_92212 0 0 0 0 1 USP43 chr17:9605017 5'GT 9605017 Upstream 1bp
chr11 12246348 12246348 1 + C T rs140261770 12246345 + 12246325 12246365 41 TGGCCCTGTGTGCCATCATCCACCGCTTCCGGCCTGAGCTC TGGCCCTGTGTGCCATCATCCACTGCTTCCGGCCTGAGCTC < 41bp 0.707289536606988 0.497782257800029 0.13861269 0.11088416 prediction 0.414579073213976 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12246345 chr11:12246348 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_92213 0 0 1 0 1 MICAL2 chr11:12246367 5'GT 12246367 Upstream 20bp
chr2 24239805 24239805 1 + G A PAAD 24239802 + 24239782 24239822 41 AGCCTGCGAGGCCTCTGGTACACGACTTTCTACTGCCTGTT AGCCTGCGAGGCCTCTGGTACACAACTTTCTACTGCCTGTT < 41bp 0.836189814005896 0.628901505375471 0.21707472 0.09065831 prediction 0.414576617260851 Functional Loss - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24239802 chr2:24239805 synonymous SNV . 0 24 hm5C_associated_SNPs_92214 0 0 0 0 1 MFSD2B chr2:24239838 5'GT 24239838 Upstream 34bp
chr2 241534095 241534095 1 + G A rs145787041 241534092 + 241534072 241534112 41 CTCACCGTTGGCTACCCGGTCACGGAGGCCGGCCACCTGCA CTCACCGTTGGCTACCCGGTCACAGAGGCCGGCCACCTGCA < 41bp 0.707287498779569 0.454016563109576 0.882207 0.45269045 prediction 0.414574997559138 Functional Loss - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241534092 chr2:241534095 synonymous SNV . 0 24 hm5C_associated_SNPs_92215 0 0 1 0 1 CAPN10 chr2:241534126 5'GT 241534126 Upstream 32bp
chr22 41620225 41620225 1 + C T UCEC 41620223 + 41620203 41620243 41 GATCCACCCAGTGGGTTGGTCACGACGTGTGGGCCACGGCA GATCCACCCAGTGGGTTGGTCATGACGTGTGGGCCACGGCA < 41bp 0.854070749878506 0.64678998344238 0.40152165 0.41996738 prediction 0.414561532872251 Functional Loss - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41620223 chr22:41620225 stopgain 0.943 0 23 hm5C_associated_SNPs_92217 0 0 1 0 1 L3MBTL2 chr22:41620255 5'GT 41620255 Upstream 31bp
chr16 67234845 67234845 1 + C T UCEC 67234842 + 67234822 67234862 41 TGGCCCTGCTGACAGCCTTGCTGCAGGGGGCCAGCCCTGTG TGGCCCTGCTGACAGCCTTGCTGTAGGGGGCCAGCCCTGTG < 41bp 0.707277321684684 0.487721696044111 0.26602143 0.14354315 prediction 0.414554643369369 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67234842 chr16:67234845 stopgain 1.000 0 24 hm5C_associated_SNPs_92220 0 0 0 0 2 ELMO3 chr16:67234793 3'AG 67234793 Downstream 53bp
chr16 67234845 67234845 1 + C T UCEC 67234842 + 67234822 67234862 41 TGGCCCTGCTGACAGCCTTGCTGCAGGGGGCCAGCCCTGTG TGGCCCTGCTGACAGCCTTGCTGTAGGGGGCCAGCCCTGTG < 41bp 0.707277321684684 0.487721696044111 0.26602143 0.14354315 prediction 0.414554643369369 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67234842 chr16:67234845 stopgain 1.000 0 24 hm5C_associated_SNPs_92220 0 0 0 0 2 ELMO3 chr16:67234871 5'GT 67234871 Upstream 27bp
chr5 180338435 180338435 1 + C T LGG 180338432 + 180338412 180338452 41 GGGCTGGTTCCCCCGGCCCACAGCGAAGTGGAAAGGTCCAC GGGCTGGTTCCCCCGGCCCACAGTGAAGTGGAAAGGTCCAC < 41bp 0.707276235752931 0.494809858752964 0.34881228 0.16890785 prediction 0.414552471505862 Functional Loss - BTNL8 ENSG00000113303 CDS Human protein_coding chr5:180338432 chr5:180338435 nonsynonymous SNV 0.015 0 24 hm5C_associated_SNPs_92221 0 0 0 0 1 BTNL8 chr5:180338339 3'AG 180338339 Downstream 97bp
chr2 155555962 155555962 1 + C T STAD 155555959 + 155555939 155555979 41 CTGCGCAACAGCCACATGGTCTCCGCGCAGATTCGCTGCAA CTGCGCAACAGCCACATGGTCTCTGCGCAGATTCGCTGCAA < 41bp 0.756208511022219 0.548938443166657 0.10707757 0.035030335 prediction 0.414540135711123 Functional Loss - KCNJ3 ENSG00000162989 CDS Human protein_coding chr2:155555959 chr2:155555962 synonymous SNV . 0 24 hm5C_associated_SNPs_92223 0 0 0 0 1 KCNJ3 chr2:155555989 5'GT 155555989 Upstream 28bp
chr17 48050440 48050440 1 + C T UCEC 48050438 + 48050418 48050458 41 GTGTTGTGCTGCCCACCAGACTCGGAGAAGCCGCGGCTGTC GTGTTGTGCTGCCCACCAGACTTGGAGAAGCCGCGGCTGTC < 41bp 0.842289260649979 0.635019871761025 0.6146243 0.48874247 prediction 0.414538777777908 Functional Loss - DLX4 ENSG00000108813 CDS Human protein_coding chr17:48050438 chr17:48050440 nonsynonymous SNV 0.452 1 23 hm5C_associated_SNPs_92224 0 0 0 0 1 DLX4 chr17:48050437 3'AG 48050437 Downstream 4bp
chr2 85663599 85663599 1 + C T SKCM 85663597 + 85663577 85663617 41 CTCCCTGGCCAGCTCTTCTCCTCCGTGGCGGCCATGGTCCA CTCCCTGGCCAGCTCTTCTCCTTCGTGGCGGCCATGGTCCA < 41bp 0.707268377153656 0.421634044434224 0.05028391 0.075410396 prediction 0.414536754307311 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85663597 chr2:85663599 nonsynonymous SNV 0.037 4 23 hm5C_associated_SNPs_92225 0 0 0 1 1 SH2D6 chr2:85663589 3'AG 85663589 Downstream 11bp
chr2 85663600 85663600 1 + C T UCEC 85663597 + 85663577 85663617 41 CTCCCTGGCCAGCTCTTCTCCTCCGTGGCGGCCATGGTCCA CTCCCTGGCCAGCTCTTCTCCTCTGTGGCGGCCATGGTCCA < 41bp 0.707268377153656 0.490321581816719 0.05028391 0.0652051 prediction 0.414536754307311 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85663597 chr2:85663600 synonymous SNV . 0 24 hm5C_associated_SNPs_92226 0 0 0 5 1 SH2D6 chr2:85663589 3'AG 85663589 Downstream 12bp
chr4 3449251 3449251 1 + G T LUAD 3449247 + 3449227 3449267 41 GGGACAGCGTCTCCGTGGTGCTGGGCCAGCACTTCTTCAAC GGGACAGCGTCTCCGTGGTGCTGGTCCAGCACTTCTTCAAC < 41bp 0.758343187417663 0.551076563561881 0.33124065 0.11700326 prediction 0.414533247711564 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3449247 chr4:3449251 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_92227 0 0 1 0 1 HGFAC chr4:3449219 3'AG 3449219 Downstream 33bp
chr15 45440173 45440173 1 + G T LGG 45440169 + 45440149 45440189 41 GATGGGAATGGCCTCATTTCCAAGGATGAGTTCATCAGGAT GATGGGAATGGCCTCATTTCCAAGTATGAGTTCATCAGGAT < 41bp 0.717977056162277 0.510711493818795 0.92270005 0.90152216 prediction 0.414531124686963 Functional Loss - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45440169 chr15:45440173 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_92228 0 0 0 0 1 DUOX1 chr15:45440195 5'GT 45440195 Upstream 23bp
chr3 20181809 20181809 1 + C T rs116196143 20181807 + 20181787 20181827 41 AATGGGATGTGAGCTAAATCCACGGATCCCGTACACAGAAT AATGGGATGTGAGCTAAATCCATGGATCCCGTACACAGAAT < 41bp 0.862385378089195 0.655120575778611 0.7104985 0.49759647 prediction 0.414529604621168 Functional Loss - KAT2B ENSG00000114166 CDS Human protein_coding chr3:20181807 chr3:20181809 nonsynonymous SNV 0.011 1 23 hm5C_associated_SNPs_92229 0 0 0 0 1 KAT2B chr3:20181856 5'GT 20181856 Upstream 48bp
chr2 85510662 85510662 1 + C T rs111816159 85510659 + 85510639 85510679 41 CTCCTCGATGTCCCCTCCAGCGCCACAGTCAAGGACACGAG CTCCTCGATGTCCCCTCCAGCGCTACAGTCAAGGACACGAG < 41bp 0.745015735142783 0.537753835849123 0.038209736 0.051083535 prediction 0.41452379858732 Functional Loss - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85510659 chr2:85510662 synonymous SNV . 0 24 hm5C_associated_SNPs_92230 0 0 0 0 2 TCF7L1 chr2:85510618 3'AG 85510618 Downstream 45bp
chr2 85510662 85510662 1 + C T rs111816159 85510659 + 85510639 85510679 41 CTCCTCGATGTCCCCTCCAGCGCCACAGTCAAGGACACGAG CTCCTCGATGTCCCCTCCAGCGCTACAGTCAAGGACACGAG < 41bp 0.745015735142783 0.537753835849123 0.038209736 0.051083535 prediction 0.41452379858732 Functional Loss - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85510659 chr2:85510662 synonymous SNV . 0 24 hm5C_associated_SNPs_92230 0 0 0 0 2 TCF7L1 chr2:85510701 5'GT 85510701 Upstream 40bp
chr6 96986556 96986556 1 + A C COAD 96986552 + 96986532 96986572 41 TTGAAGATGCTGCCATATTGCTTCAGCAGGTGATGAGGGCA TTGAAGATGCTGCCATATTGCTTCCGCAGGTGATGAGGGCA < 41bp 0.707260476829945 0.291194575764237 0.020240068 0.025437415 prediction 0.41452095365989 Functional Loss - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96986552 chr6:96986556 nonsynonymous SNV 0.984 1 25 hm5C_associated_SNPs_92231 0 0 1 2 1 UFL1 chr6:96986507 3'AG 96986507 Downstream 50bp
chr22 50957725 50957725 1 + C T SKCM 50957723 + 50957703 50957743 41 CCCCCAAGGCCGCTCTGGAGCCCAAGGAGTCCAGGAGCCCG CCCCCAAGGCCGCTCTGGAGCCTAAGGAGTCCAGGAGCCCG < 41bp 0.707259812324551 0.446577409128489 0.2295922 0.26287502 prediction 0.414519624649101 Functional Loss - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50957723 chr22:50957725 synonymous SNV . 0 23 hm5C_associated_SNPs_92233 0 0 1 0 1 NCAPH2 chr22:50957749 5'GT 50957749 Upstream 25bp
chr19 42352592 42352592 1 + G A rs140189759 42352589 + 42352569 42352609 41 CCTGCTGGCACCGACACCCCCCGGGAAGGTAAGGAGAGGCT CCTGCTGGCACCGACACCCCCCGAGAAGGTAAGGAGAGGCT < 41bp 0.707259768615211 0.463339570453731 0.20539111 0.056196153 prediction 0.414519537230422 Functional Loss - DMRTC2 ENSG00000142025 CDS Human protein_coding chr19:42352589 chr19:42352592 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_92234 0 0 0 0 2 DMRTC2 chr19:42352520 3'AG 42352520 Downstream 73bp
chr19 42352592 42352592 1 + G A rs140189759 42352589 + 42352569 42352609 41 CCTGCTGGCACCGACACCCCCCGGGAAGGTAAGGAGAGGCT CCTGCTGGCACCGACACCCCCCGAGAAGGTAAGGAGAGGCT < 41bp 0.707259768615211 0.463339570453731 0.20539111 0.056196153 prediction 0.414519537230422 Functional Loss - DMRTC2 ENSG00000142025 CDS Human protein_coding chr19:42352589 chr19:42352592 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_92234 0 0 0 0 2 DMRTC2 chr19:42352596 5'GT 42352596 Upstream 5bp
chr2 64812640 64812640 1 + G A LUSC 64812637 + 64812617 64812657 41 CAAAGTGACTGATGCATTTGCAAGACTCATGTCTACAGTAG CAAAGTGACTGATGCATTTGCAAAACTCATGTCTACAGTAG < 41bp 0.707259674479863 0.497803089881108 0.2856652 0.054670632 prediction 0.414519348959727 Functional Loss - AFTPH ENSG00000119844 CDS Human protein_coding chr2:64812637 chr2:64812640 nonsynonymous SNV 0.970 0 24 hm5C_associated_SNPs_92236 0 0 1 0 2 AFTPH chr2:64812556 3'AG 64812556 Downstream 85bp
chr2 64812640 64812640 1 + G A LUSC 64812637 + 64812617 64812657 41 CAAAGTGACTGATGCATTTGCAAGACTCATGTCTACAGTAG CAAAGTGACTGATGCATTTGCAAAACTCATGTCTACAGTAG < 41bp 0.707259674479863 0.497803089881108 0.2856652 0.054670632 prediction 0.414519348959727 Functional Loss - AFTPH ENSG00000119844 CDS Human protein_coding chr2:64812637 chr2:64812640 nonsynonymous SNV 0.970 0 24 hm5C_associated_SNPs_92236 0 0 1 0 2 AFTPH chr2:64812679 5'GT 64812679 Upstream 40bp
chr19 50926991 50926991 1 + G A CESC 50926988 + 50926968 50927008 41 ATGAGGCCCTCGTGGCTGGCCCCGAGGGGAAGGGATCCGAG ATGAGGCCCTCGTGGCTGGCCCCAAGGGGAAGGGATCCGAG < 41bp 0.821514596586183 0.614255213885116 0.2915382 0.33993423 prediction 0.414518765402134 Functional Loss - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50926988 chr19:50926991 nonsynonymous SNV 0.339 1 24 hm5C_associated_SNPs_92237 0 0 0 0 2 SPIB chr19:50926897 3'AG 50926897 Downstream 95bp
chr19 50926991 50926991 1 + G A CESC 50926988 + 50926968 50927008 41 ATGAGGCCCTCGTGGCTGGCCCCGAGGGGAAGGGATCCGAG ATGAGGCCCTCGTGGCTGGCCCCAAGGGGAAGGGATCCGAG < 41bp 0.821514596586183 0.614255213885116 0.2915382 0.33993423 prediction 0.414518765402134 Functional Loss - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50926988 chr19:50926991 nonsynonymous SNV 0.339 1 24 hm5C_associated_SNPs_92237 0 0 0 0 2 SPIB chr19:50927012 5'GT 50927012 Upstream 22bp
chr12 85500390 85500390 1 + G T LUAD 85500388 + 85500368 85500408 41 CCACTTCTTCAAGAAACAAACTGGAGGTAAAGAGGCATTGT CCACTTCTTCAAGAAACAAACTTGAGGTAAAGAGGCATTGT < 41bp 0.707249769686663 0.378564235340364 0.4095865 0.17205793 prediction 0.414499539373326 Functional Loss - LRRIQ1 ENSG00000133640 CDS Human protein_coding chr12:85500388 chr12:85500390 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_92240 0 0 0 0 2 LRRIQ1 chr12:85500300 3'AG 85500300 Downstream 91bp
chr12 85500390 85500390 1 + G T LUAD 85500388 + 85500368 85500408 41 CCACTTCTTCAAGAAACAAACTGGAGGTAAAGAGGCATTGT CCACTTCTTCAAGAAACAAACTTGAGGTAAAGAGGCATTGT < 41bp 0.707249769686663 0.378564235340364 0.4095865 0.17205793 prediction 0.414499539373326 Functional Loss - LRRIQ1 ENSG00000133640 CDS Human protein_coding chr12:85500388 chr12:85500390 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_92240 0 0 0 0 2 LRRIQ1 chr12:85500393 5'GT 85500393 Upstream 4bp
chr1 28157731 28157731 1 + G A rs554778656 28157728 + 28157708 28157748 41 TTGACTGAGTGCCTGGTGCTCTCGTGGAGCATCGCATCTGG TTGACTGAGTGCCTGGTGCTCTCATGGAGCATCGCATCTGG < 41bp 0.707243859811712 0.499478914212431 0.097986996 0.13245058 prediction 0.414487719623424 Functional Loss - PPP1R8 ENSG00000117751 UTR5 Human protein_coding chr1:28157728 chr1:28157731 . . 0 24 hm5C_associated_SNPs_92243 0 0 1 0 1 PPP1R8 chr1:28157757 5'GT 28157757 Upstream 27bp
chr2 228758558 228758558 1 + C T BLCA 228758555 + 228758535 228758575 41 GACGTGCAAGCTCTGGGACACTGCGTCTGGAGAGGAGCTGA GACGTGCAAGCTCTGGGACACTGTGTCTGGAGAGGAGCTGA < 41bp 0.755878692481171 0.548639176868013 0.24488252 0.09916574 prediction 0.414479031226316 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228758555 chr2:228758558 nonsynonymous SNV 0.453 1 24 hm5C_associated_SNPs_92246 0 0 0 0 2 DAW1 chr2:228758511 3'AG 228758511 Downstream 48bp
chr2 228758558 228758558 1 + C T BLCA 228758555 + 228758535 228758575 41 GACGTGCAAGCTCTGGGACACTGCGTCTGGAGAGGAGCTGA GACGTGCAAGCTCTGGGACACTGTGTCTGGAGAGGAGCTGA < 41bp 0.755878692481171 0.548639176868013 0.24488252 0.09916574 prediction 0.414479031226316 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228758555 chr2:228758558 nonsynonymous SNV 0.453 1 24 hm5C_associated_SNPs_92246 0 0 0 0 2 DAW1 chr2:228758633 5'GT 228758633 Upstream 76bp
chr12 31819092 31819092 1 + C T LUAD 31819089 + 31819069 31819109 41 TCTTGGGAGTGGATGTGGAGCTACAGCTATTGCTGCTAAGA TCTTGGGAGTGGATGTGGAGCTATAGCTATTGCTGCTAAGA < 41bp 0.70723691145915 0.480328943148104 0.17879897 0.1786454 prediction 0.414473822918299 Functional Loss - ETFBKMT ENSG00000139160 CDS Human protein_coding chr12:31819089 chr12:31819092 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_92247 0 0 0 0 2 ETFBKMT chr12:31819021 3'AG 31819021 Downstream 72bp
chr12 31819092 31819092 1 + C T LUAD 31819089 + 31819069 31819109 41 TCTTGGGAGTGGATGTGGAGCTACAGCTATTGCTGCTAAGA TCTTGGGAGTGGATGTGGAGCTATAGCTATTGCTGCTAAGA < 41bp 0.70723691145915 0.480328943148104 0.17879897 0.1786454 prediction 0.414473822918299 Functional Loss - ETFBKMT ENSG00000139160 CDS Human protein_coding chr12:31819089 chr12:31819092 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_92247 0 0 0 0 2 ETFBKMT chr12:31819151 5'GT 31819151 Upstream 60bp
chr10 293358 293358 1 + A C rs34846683 293357 + 293337 293377 41 GCTAAAGGTCACTCAAGAACCAAGAGCAAAGAAAGGACGAC GCTAAAGGTCACTCAAGAACCCAGAGCAAAGAAAGGACGAC < 41bp 0.809183220941327 0.601948018803643 0.06595543 0.040301204 prediction 0.414470404275369 Functional Loss - ZMYND11 ENSG00000015171 CDS Human protein_coding chr10:293357 chr10:293358 synonymous SNV . 0 22 hm5C_associated_SNPs_92249 0 0 0 0 2 ZMYND11 chr10:293338 3'AG 293338 Downstream 21bp
chr10 293358 293358 1 + A C rs34846683 293357 + 293337 293377 41 GCTAAAGGTCACTCAAGAACCAAGAGCAAAGAAAGGACGAC GCTAAAGGTCACTCAAGAACCCAGAGCAAAGAAAGGACGAC < 41bp 0.809183220941327 0.601948018803643 0.06595543 0.040301204 prediction 0.414470404275369 Functional Loss - ZMYND11 ENSG00000015171 CDS Human protein_coding chr10:293357 chr10:293358 synonymous SNV . 0 22 hm5C_associated_SNPs_92249 0 0 0 0 2 ZMYND11 chr10:293406 5'GT 293406 Upstream 49bp
chr3 52818466 52818466 1 + G A OV 52818463 + 52818443 52818483 41 GGACGGGCCCAGAGAATCTACGAGGACCATGATGCCACCCA GGACGGGCCCAGAGAATCTACGAAGACCATGATGCCACCCA < 41bp 0.822546155621288 0.615311354664064 0.88271624 0.72646123 prediction 0.414469601914446 Functional Loss - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52818463 chr3:52818466 synonymous SNV . 0 24 hm5C_associated_SNPs_92250 0 0 0 0 1 ITIH1 chr3:52818493 5'GT 52818493 Upstream 28bp
chr2 242741215 242741215 1 + G T HNSC 242741213 + 242741193 242741233 41 CAGCCTGTTTGGGGGCCAGGCTGAGGGGCCGCCGGTCACCA CAGCCTGTTTGGGGGCCAGGCTTAGGGGCCGCCGGTCACCA < 41bp 0.707230939304901 0.351056524928319 0.64675856 0.30301616 prediction 0.414461878609803 Functional Loss - GAL3ST2 ENSG00000154252 CDS Human protein_coding chr2:242741213 chr2:242741215 stopgain 0.000 0 23 hm5C_associated_SNPs_92252 0 0 0 0 1 GAL3ST2 chr2:242741196 3'AG 242741196 Downstream 20bp
chr1 34684296 34684296 1 + G A COAD 34684293 + 34684273 34684313 41 TCCCTCTCTTCCAGGTTCGGCTCGACATCCGGAGGGCCCTT TCCCTCTCTTCCAGGTTCGGCTCAACATCCGGAGGGCCCTT < 41bp 0.707229583456636 0.467882415087781 0.09860328 0.19645661 prediction 0.414459166913273 Functional Loss - C1orf94 ENSG00000142698 CDS Human protein_coding chr1:34684293 chr1:34684296 synonymous SNV . 0 24 hm5C_associated_SNPs_92254 0 0 0 0 1 C1orf94 chr1:34684287 3'AG 34684287 Downstream 10bp
chr1 34684295 34684295 1 + C T SKCM 34684293 + 34684273 34684313 41 TCCCTCTCTTCCAGGTTCGGCTCGACATCCGGAGGGCCCTT TCCCTCTCTTCCAGGTTCGGCTTGACATCCGGAGGGCCCTT < 41bp 0.707229583456636 0.427947772843124 0.09860328 0.066268295 prediction 0.414459166913273 Functional Loss - C1orf94 ENSG00000142698 CDS Human protein_coding chr1:34684293 chr1:34684295 nonsynonymous SNV 0.331 3 23 hm5C_associated_SNPs_92255 0 0 0 0 1 C1orf94 chr1:34684287 3'AG 34684287 Downstream 9bp
chr19 19627086 19627086 1 + G C DLBC 19627085 + 19627065 19627105 41 GAAGCAGGACATGCCTCCGCCGGGGGGCTATGGGCCCATCG GAAGCAGGACATGCCTCCGCCCGGGGGCTATGGGCCCATCG < 41bp 0.896583872780063 0.689355344589304 0.9110297 0.91412425 prediction 0.414457056381519 Functional Loss - NDUFA13 ENSG00000186010;ENSG00000250067;ENSG00000258674 CDS Human other chr19:19627085 chr19:19627086 synonymous SNV . 0 22 hm5C_associated_SNPs_92256 0 0 1 0 1 NDUFA13 chr19:19627141 5'GT 19627141 Upstream 56bp
chr13 23777864 23777864 1 + G T UCEC 23777860 + 23777840 23777880 41 CGTGAGCAGTACACTACAGCCACAGAAGGCATCTGCATAGA CGTGAGCAGTACACTACAGCCACATAAGGCATCTGCATAGA < 41bp 0.710190438502305 0.502962863197139 0.25466654 0.07045767 prediction 0.414455150610334 Functional Loss - SGCG ENSG00000102683 CDS Human protein_coding chr13:23777860 chr13:23777864 stopgain 0.998 1 25 hm5C_associated_SNPs_92257 0 0 0 0 1 SGCG chr13:23777834 3'AG 23777834 Downstream 31bp
chr6 33636908 33636908 1 + G A UCEC 33636905 + 33636885 33636925 41 AGGCGCGGGCCGGCAACGCCCACGACGAGAATGTGCTCAGC AGGCGCGGGCCGGCAACGCCCACAACGAGAATGTGCTCAGC < 41bp 0.789468861753599 0.582242912955566 0.24566266 0.22978145 prediction 0.414451897596066 Functional Loss - ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33636905 chr6:33636908 nonsynonymous SNV 0.810 4 24 hm5C_associated_SNPs_92258 0 0 1 0 1 ITPR3 chr6:33636933 5'GT 33636933 Upstream 26bp
chr6 43096778 43096778 1 + G T LUAD 43096774 + 43096754 43096794 41 CCCAGGATGCACTGCAGGGGCGCCGGGCGCTGCTTCGCTGT CCCAGGATGCACTGCAGGGGCGCCTGGCGCTGCTTCGCTGT < 41bp 0.746198565273937 0.538972817440774 0.35568717 0.1415829 prediction 0.414451495666326 Functional Loss - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43096774 chr6:43096778 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_92259 0 0 1 0 1 PTK7 chr6:43096715 3'AG 43096715 Downstream 64bp
chr2 26802210 26802210 1 + C T SKCM 26802208 + 26802188 26802228 41 GGCACCTTTTAAGACTAGCCCCCGAGAACCTGAAGACCTAC GGCACCTTTTAAGACTAGCCCCTGAGAACCTGAAGACCTAC < 41bp 0.760807130675739 0.553591385285398 0.05395034 0.050980747 prediction 0.414431490780683 Functional Loss - C2orf70 ENSG00000173557 CDS Human protein_coding chr2:26802208 chr2:26802210 stopgain 0.070 0 23 hm5C_associated_SNPs_92264 0 0 0 0 1 C2orf70 chr2:26802162 3'AG 26802162 Downstream 49bp
chr16 68390624 68390624 1 + C T UCEC 68390621 + 68390601 68390641 41 CAGGCCCGGGCAGAGCCACGCAGCGGTGCTATGGATGGAGT CAGGCCCGGGCAGAGCCACGCAGTGGTGCTATGGATGGAGT < 41bp 0.737694402553168 0.530485941373283 0.5273111 0.46702996 prediction 0.41441692235977 Functional Loss - PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68390621 chr16:68390624 nonsynonymous SNV 0.047 0 24 hm5C_associated_SNPs_92266 0 0 1 0 1 PRMT7 chr16:68390604 3'AG 68390604 Downstream 21bp
chr3 44955090 44955090 1 + G A UCEC 44955087 + 44955067 44955107 41 ATTTTCCAGGACGGTGCAGCCTGGTGAGACCATCCAATCCC ATTTTCCAGGACGGTGCAGCCTGATGAGACCATCCAATCCC < 41bp 0.707207352193551 0.48482925646875 0.24109945 0.065785825 prediction 0.414414704387103 Functional Loss - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44955087 chr3:44955090 nonsynonymous SNV 0.030 3 24 hm5C_associated_SNPs_92267 0 0 0 0 1 TGM4 chr3:44955076 3'AG 44955076 Downstream 15bp
chr2 85661489 85661489 1 + G A ESCA 85661486 + 85661466 85661506 41 TACCACAGCCCCCCAGGAAACTCGGAATGTAAGAGGCTGAT TACCACAGCCCCCCAGGAAACTCAGAATGTAAGAGGCTGAT < 41bp 0.707205162135553 0.471455001873773 0.25758952 0.15332013 prediction 0.414410324271107 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85661486 chr2:85661489 nonsynonymous SNV 0.333 0 24 hm5C_associated_SNPs_92269 0 0 0 0 2 SH2D6 chr2:85661463 3'AG 85661463 Downstream 27bp
chr2 85661489 85661489 1 + G A ESCA 85661486 + 85661466 85661506 41 TACCACAGCCCCCCAGGAAACTCGGAATGTAAGAGGCTGAT TACCACAGCCCCCCAGGAAACTCAGAATGTAAGAGGCTGAT < 41bp 0.707205162135553 0.471455001873773 0.25758952 0.15332013 prediction 0.414410324271107 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85661486 chr2:85661489 nonsynonymous SNV 0.333 0 24 hm5C_associated_SNPs_92269 0 0 0 0 2 SH2D6 chr2:85661493 5'GT 85661493 Upstream 5bp
chr2 85661488 85661488 1 + C T UCEC 85661486 + 85661466 85661506 41 TACCACAGCCCCCCAGGAAACTCGGAATGTAAGAGGCTGAT TACCACAGCCCCCCAGGAAACTTGGAATGTAAGAGGCTGAT < 41bp 0.707205162135553 0.446347294219232 0.25758952 0.16339526 prediction 0.414410324271107 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85661486 chr2:85661488 nonsynonymous SNV 0.302 1 23 hm5C_associated_SNPs_92270 0 0 0 0 2 SH2D6 chr2:85661463 3'AG 85661463 Downstream 26bp
chr2 85661488 85661488 1 + C T UCEC 85661486 + 85661466 85661506 41 TACCACAGCCCCCCAGGAAACTCGGAATGTAAGAGGCTGAT TACCACAGCCCCCCAGGAAACTTGGAATGTAAGAGGCTGAT < 41bp 0.707205162135553 0.446347294219232 0.25758952 0.16339526 prediction 0.414410324271107 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85661486 chr2:85661488 nonsynonymous SNV 0.302 1 23 hm5C_associated_SNPs_92270 0 0 0 0 2 SH2D6 chr2:85661493 5'GT 85661493 Upstream 6bp
chr1 159785237 159785237 1 + C T OV 159785234 + 159785214 159785254 41 ACAGCCAGGTCTGCTGAGTTCACCGTGGGGAGAAAGGTGAG ACAGCCAGGTCTGCTGAGTTCACTGTGGGGAGAAAGGTGAG < 41bp 0.727917382669873 0.520712863713452 0.41746834 0.3841046 prediction 0.414409037912842 Functional Loss - FCRL6 ENSG00000181036 CDS Human protein_coding chr1:159785234 chr1:159785237 synonymous SNV . 0 24 hm5C_associated_SNPs_92271 0 0 0 0 2 FCRL6 chr1:159785218 3'AG 159785218 Downstream 20bp
chr1 159785237 159785237 1 + C T OV 159785234 + 159785214 159785254 41 ACAGCCAGGTCTGCTGAGTTCACCGTGGGGAGAAAGGTGAG ACAGCCAGGTCTGCTGAGTTCACTGTGGGGAGAAAGGTGAG < 41bp 0.727917382669873 0.520712863713452 0.41746834 0.3841046 prediction 0.414409037912842 Functional Loss - FCRL6 ENSG00000181036 CDS Human protein_coding chr1:159785234 chr1:159785237 synonymous SNV . 0 24 hm5C_associated_SNPs_92271 0 0 0 0 2 FCRL6 chr1:159785249 5'GT 159785249 Upstream 13bp
chr3 49043534 49043534 1 + G A READ 49043531 + 49043511 49043551 41 TGACGTGGACCTCCGTGACACACGGAGGCACTGTGACAAGG TGACGTGGACCTCCGTGACACACAGAGGCACTGTGACAAGG < 41bp 0.812473928753954 0.60527661454715 0.12319106 0.051951736 prediction 0.414394628413606 Functional Loss - P4HTM ENSG00000178467 CDS Human protein_coding chr3:49043531 chr3:49043534 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_92272 0 0 0 0 1 P4HTM chr3:49043620 5'GT 49043620 Upstream 87bp
chr7 99661597 99661597 1 + A T rs190422699 99661595 + 99661575 99661615 41 CCTCTTCAAGAGGCAGGCTCCAAGAAAGGTAGAGAATCAGT CCTCTTCAAGAGGCAGGCTCCATGAAAGGTAGAGAATCAGT < 41bp 0.727651947164554 0.520455391428383 0.047982067 0.050275683 prediction 0.414393111472341 Functional Loss - ZSCAN21 ENSG00000166529 CDS Human protein_coding chr7:99661595 chr7:99661597 nonsynonymous SNV 0.932 1 23 hm5C_associated_SNPs_92273 0 0 0 0 1 ZSCAN21 chr7:99661602 5'GT 99661602 Upstream 6bp
chr10 75854095 75854095 1 + G T HNSC 75854093 + 75854073 75854113 41 TGGCCACGGCCCTGCAGAACCTGCAGACCAAAACCAACCGG TGGCCACGGCCCTGCAGAACCTTCAGACCAAAACCAACCGG < 41bp 0.908450190759333 0.701260247743656 0.634604 0.5765632 prediction 0.414379886031353 Functional Loss - VCL ENSG00000035403 CDS Human protein_coding chr10:75854093 chr10:75854095 synonymous SNV . 0 23 hm5C_associated_SNPs_92280 0 0 1 0 1 VCL chr10:75854029 3'AG 75854029 Downstream 67bp
chr2 27261663 27261663 1 + A C LUAD 27261662 + 27261642 27261682 41 AGTAACAACCAGGATGTCGTCACCTGTGACATGGCCTGCAA AGTAACAACCAGGATGTCGTCCCCTGTGACATGGCCTGCAA < 41bp 0.8442300475545 0.63704114157219 0.6450331 0.19464824 prediction 0.414377811964619 Functional Loss - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27261662 chr2:27261663 nonsynonymous SNV 0.065 0 22 hm5C_associated_SNPs_92283 0 0 1 2 2 TMEM214 chr2:27261570 3'AG 27261570 Downstream 94bp
chr2 27261663 27261663 1 + A C LUAD 27261662 + 27261642 27261682 41 AGTAACAACCAGGATGTCGTCACCTGTGACATGGCCTGCAA AGTAACAACCAGGATGTCGTCCCCTGTGACATGGCCTGCAA < 41bp 0.8442300475545 0.63704114157219 0.6450331 0.19464824 prediction 0.414377811964619 Functional Loss - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27261662 chr2:27261663 nonsynonymous SNV 0.065 0 22 hm5C_associated_SNPs_92283 0 0 1 2 2 TMEM214 chr2:27261683 5'GT 27261683 Upstream 21bp
chr7 142962174 142962174 1 + G A STAD 142962171 + 142962151 142962191 41 CGTCCCGGGAGCTGTGGATGCGCGTCTGGTCAAGGGTGAGT CGTCCCGGGAGCTGTGGATGCGCATCTGGTCAAGGGTGAGT < 41bp 0.816524833661786 0.609340567601238 0.1317488 0.12830499 prediction 0.414368532121096 Functional Loss - GSTK1 ENSG00000197448 CDS Human protein_coding chr7:142962171 chr7:142962174 nonsynonymous SNV 0.219 0 24 hm5C_associated_SNPs_92284 0 0 1 0 1 GSTK1 chr7:142962085 3'AG 142962085 Downstream 90bp
chr4 123336584 123336584 1 + C T HNSC 123336581 + 123336561 123336601 41 GCTTAGAAATCGCTATAAAGCAACGTGTTGATGATGCACTC GCTTAGAAATCGCTATAAAGCAATGTGTTGATGATGCACTC < 41bp 0.732585181578571 0.525401585041629 0.30065417 0.32858086 prediction 0.414367193073885 Functional Loss - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123336581 chr4:123336584 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_92285 0 0 0 0 1 ADAD1 chr4:123336534 3'AG 123336534 Downstream 51bp
chr18 77805847 77805847 1 + G A BLCA 77805844 + 77805824 77805864 41 CCAGTCTGTGTGGGATCGATCATGAGGCGCTCAACAAGCAG CCAGTCTGTGTGGGATCGATCATAAGGCGCTCAACAAGCAG < 41bp 0.707181737235126 0.46273914950305 0.732722 0.34560362 prediction 0.414363474470252 Functional Loss - RBFA ENSG00000101546 CDS Human protein_coding chr18:77805844 chr18:77805847 nonsynonymous SNV 0.274 1 24 hm5C_associated_SNPs_92288 0 0 1 0 1 RBFA chr18:77805774 3'AG 77805774 Downstream 74bp
chr22 39411666 39411666 1 + C T COAD 39411663 + 39411643 39411683 41 TTTAAAAACCTATGGGAAGCCAACGATCGGAACGAAACTTG TTTAAAAACCTATGGGAAGCCAATGATCGGAACGAAACTTG < 41bp 0.72906619798716 0.521884840399338 0.06059596 0.28570163 prediction 0.414362715175642 Functional Loss - APOBEC3C ENSG00000244509 CDS Human protein_coding chr22:39411663 chr22:39411666 synonymous SNV . 0 24 hm5C_associated_SNPs_92289 0 0 1 0 2 APOBEC3C chr22:39411600 3'AG 39411600 Downstream 67bp
chr22 39411666 39411666 1 + C T COAD 39411663 + 39411643 39411683 41 TTTAAAAACCTATGGGAAGCCAACGATCGGAACGAAACTTG TTTAAAAACCTATGGGAAGCCAATGATCGGAACGAAACTTG < 41bp 0.72906619798716 0.521884840399338 0.06059596 0.28570163 prediction 0.414362715175642 Functional Loss - APOBEC3C ENSG00000244509 CDS Human protein_coding chr22:39411663 chr22:39411666 synonymous SNV . 0 24 hm5C_associated_SNPs_92289 0 0 1 0 2 APOBEC3C chr22:39411756 5'GT 39411756 Upstream 91bp
chr11 15170676 15170676 1 + G A rs143647499 15170673 + 15170653 15170693 41 GCCATCCTGCCCTCTATTTTCAGGGTCACGACCGCTGCAAG GCCATCCTGCCCTCTATTTTCAGAGTCACGACCGCTGCAAG < 41bp 0.791348272683157 0.584167995296897 0.9587273 0.9457953 prediction 0.414360554772519 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15170673 chr11:15170676 nonsynonymous SNV 0.667 0 24 hm5C_associated_SNPs_92291 0 0 0 0 1 INSC chr11:15170676 3'AG 15170676 Downstream 1bp
chr16 85105479 85105479 1 + G A UCEC 85105476 + 85105456 85105496 41 CGGGAGTGGTTTGCTCGATACGTGAGTGCCCAGGTAAGGGC CGGGAGTGGTTTGCTCGATACGTAAGTGCCCAGGTAAGGGC < 41bp 0.707175057347018 0.451100724078581 0.33230874 0.10315344 prediction 0.414350114694037 Functional Loss - KIAA0513 ENSG00000135709 CDS Human protein_coding chr16:85105476 chr16:85105479 synonymous SNV . 0 24 hm5C_associated_SNPs_92295 0 0 1 0 2 KIAA0513 chr16:85105389 3'AG 85105389 Downstream 91bp
chr16 85105479 85105479 1 + G A UCEC 85105476 + 85105456 85105496 41 CGGGAGTGGTTTGCTCGATACGTGAGTGCCCAGGTAAGGGC CGGGAGTGGTTTGCTCGATACGTAAGTGCCCAGGTAAGGGC < 41bp 0.707175057347018 0.451100724078581 0.33230874 0.10315344 prediction 0.414350114694037 Functional Loss - KIAA0513 ENSG00000135709 CDS Human protein_coding chr16:85105476 chr16:85105479 synonymous SNV . 0 24 hm5C_associated_SNPs_92295 0 0 1 0 2 KIAA0513 chr16:85105488 5'GT 85105488 Upstream 10bp
chr5 161116287 161116287 1 + G T LUAD 161116284 + 161116264 161116304 41 ACCATCAATGCTGACTGTCCCATGAGGCTGGTTAACTTTCC ACCATCAATGCTGACTGTCCCATTAGGCTGGTTAACTTTCC < 41bp 0.707174155242643 0.322091298071569 0.39296094 0.10618797 prediction 0.414348310485287 Functional Loss - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161116284 chr5:161116287 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_92296 0 0 0 0 2 GABRA6 chr5:161116260 3'AG 161116260 Downstream 28bp
chr5 161116287 161116287 1 + G T LUAD 161116284 + 161116264 161116304 41 ACCATCAATGCTGACTGTCCCATGAGGCTGGTTAACTTTCC ACCATCAATGCTGACTGTCCCATTAGGCTGGTTAACTTTCC < 41bp 0.707174155242643 0.322091298071569 0.39296094 0.10618797 prediction 0.414348310485287 Functional Loss - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161116284 chr5:161116287 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_92296 0 0 0 0 2 GABRA6 chr5:161116342 5'GT 161116342 Upstream 56bp
chr19 14034211 14034211 1 + T C LUSC 14034210 + 14034190 14034230 41 GCGGCCTGGCCCGGGTCTGTCTCAGGAGGCCGCCCGGCGCT GCGGCCTGGCCCGGGTCTGTCCCAGGAGGCCGCCCGGCGCT < 41bp 0.841294330921412 0.634121156312172 0.12966949 0.23957568 prediction 0.414346349218481 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14034210 chr19:14034211 synonymous SNV . 0 22 hm5C_associated_SNPs_92297 0 0 1 0 2 CC2D1A chr19:14034146 3'AG 14034146 Downstream 66bp
chr19 14034211 14034211 1 + T C LUSC 14034210 + 14034190 14034230 41 GCGGCCTGGCCCGGGTCTGTCTCAGGAGGCCGCCCGGCGCT GCGGCCTGGCCCGGGTCTGTCCCAGGAGGCCGCCCGGCGCT < 41bp 0.841294330921412 0.634121156312172 0.12966949 0.23957568 prediction 0.414346349218481 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14034210 chr19:14034211 synonymous SNV . 0 22 hm5C_associated_SNPs_92297 0 0 1 0 2 CC2D1A chr19:14034268 5'GT 14034268 Upstream 58bp
chr1 228033682 228033682 1 + G T STAD 228033678 + 228033658 228033698 41 GACTCCGGGGGCCCACTTGTCTGTGAATTCAACCGCAGCTG GACTCCGGGGGCCCACTTGTCTGTTAATTCAACCGCAGCTG < 41bp 0.722714846193144 0.515541921428765 0.13472158 0.13613537 prediction 0.414345849528758 Functional Loss - PRSS38 ENSG00000185888 CDS Human protein_coding chr1:228033678 chr1:228033682 stopgain 0.667 0 25 hm5C_associated_SNPs_92298 0 0 0 0 1 PRSS38 chr1:228033655 3'AG 228033655 Downstream 28bp
chr2 95541392 95541392 1 + G T COAD 95541389 + 95541369 95541409 41 GCGGCACTGAAGCAGGCCATCAAGGACAAAGAGGCACCTCT GCGGCACTGAAGCAGGCCATCAATGACAAAGAGGCACCTCT < 41bp 0.707167077396138 0.305575020228962 0.7376983 0.10334173 prediction 0.414334154792277 Functional Loss - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95541389 chr2:95541392 nonsynonymous SNV 0.977 0 24 hm5C_associated_SNPs_92302 0 0 0 0 2 TEKT4 chr2:95541333 3'AG 95541333 Downstream 60bp
chr2 95541392 95541392 1 + G T COAD 95541389 + 95541369 95541409 41 GCGGCACTGAAGCAGGCCATCAAGGACAAAGAGGCACCTCT GCGGCACTGAAGCAGGCCATCAATGACAAAGAGGCACCTCT < 41bp 0.707167077396138 0.305575020228962 0.7376983 0.10334173 prediction 0.414334154792277 Functional Loss - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95541389 chr2:95541392 nonsynonymous SNV 0.977 0 24 hm5C_associated_SNPs_92302 0 0 0 0 2 TEKT4 chr2:95541487 5'GT 95541487 Upstream 96bp
chr3 169492331 169492331 1 + G A UCEC 169492328 + 169492308 169492348 41 ACTGTTGGAGTTTATATACACAGGAACTTTAAATCTTGACA ACTGTTGGAGTTTATATACACAGAAACTTTAAATCTTGACA < 41bp 0.757798964655506 0.550640293784832 0.21728283 0.15402633 prediction 0.414317341741348 Functional Loss - MYNN ENSG00000085274 CDS Human protein_coding chr3:169492328 chr3:169492331 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_92312 0 0 0 0 1 MYNN chr3:169492349 5'GT 169492349 Upstream 19bp
chr19 6822268 6822268 1 + C T UCEC 6822265 + 6822245 6822285 41 GAGGATGAGGACCTGTATGACTGCGTGGAGAATGAGGAGGC GAGGATGAGGACCTGTATGACTGTGTGGAGAATGAGGAGGC < 41bp 0.784538872327196 0.577381606876894 0.25235677 0.15044916 prediction 0.414314530900603 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6822265 chr19:6822268 synonymous SNV . 0 24 hm5C_associated_SNPs_92313 0 0 1 0 2 VAV1 chr19:6822232 3'AG 6822232 Downstream 37bp
chr19 6822268 6822268 1 + C T UCEC 6822265 + 6822245 6822285 41 GAGGATGAGGACCTGTATGACTGCGTGGAGAATGAGGAGGC GAGGATGAGGACCTGTATGACTGTGTGGAGAATGAGGAGGC < 41bp 0.784538872327196 0.577381606876894 0.25235677 0.15044916 prediction 0.414314530900603 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6822265 chr19:6822268 synonymous SNV . 0 24 hm5C_associated_SNPs_92313 0 0 1 0 2 VAV1 chr19:6822340 5'GT 6822340 Upstream 73bp
chr6 32609255 32609255 1 + G T rs1142332 32609251 + 32609231 32609271 41 AATTTGGAGGTTTTGACCCGCAGGGTGCACTGAGAAACATG AATTTGGAGGTTTTGACCCGCAGGTTGCACTGAGAAACATG < 41bp 0.723362674237042 0.516209510456852 0.83783555 0.51327974 prediction 0.414306327560379 Functional Loss - HLA-DQA1 ENSG00000196735 CDS Human protein_coding chr6:32609251 chr6:32609255 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_92315 0 0 0 3 1 HLA-DQA1 chr6:32609335 5'GT 32609335 Upstream 81bp
chr1 17596805 17596805 1 + G A SKCM 17596802 + 17596782 17596822 41 CCTATGAGGTACCCCGCTTGCATGGGGATGAGGAGCGCTTC CCTATGAGGTACCCCGCTTGCATAGGGATGAGGAGCGCTTC < 41bp 0.819585095815715 0.612434977513463 0.8790796 0.770329 prediction 0.414300236604504 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17596802 chr1:17596805 nonsynonymous SNV 0.204 4 24 hm5C_associated_SNPs_92317 0 0 0 0 1 PADI3 chr1:17596728 3'AG 17596728 Downstream 78bp
chr6 36993615 36993615 1 + C T rs79120653 36993612 + 36993592 36993632 41 TACCGGGCCGAACTGAAATACGACGACAACAGGCCCAACCG TACCGGGCCGAACTGAAATACGATGACAACAGGCCCAACCG < 41bp 0.737253321867887 0.530105943945501 0.19296256 0.26227438 prediction 0.414294755844771 Functional Loss - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36993612 chr6:36993615 synonymous SNV . 0 24 hm5C_associated_SNPs_92318 0 0 0 0 2 FGD2 chr6:36993568 3'AG 36993568 Downstream 48bp
chr6 36993615 36993615 1 + C T rs79120653 36993612 + 36993592 36993632 41 TACCGGGCCGAACTGAAATACGACGACAACAGGCCCAACCG TACCGGGCCGAACTGAAATACGATGACAACAGGCCCAACCG < 41bp 0.737253321867887 0.530105943945501 0.19296256 0.26227438 prediction 0.414294755844771 Functional Loss - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36993612 chr6:36993615 synonymous SNV . 0 24 hm5C_associated_SNPs_92318 0 0 0 0 2 FGD2 chr6:36993714 5'GT 36993714 Upstream 100bp
chr12 11905513 11905513 1 + C T STAD 11905510 + 11905490 11905530 41 CGATCCGCCTGCCTGCGCACCTGCGTGAGTGTTCGTGACCC CGATCCGCCTGCCTGCGCACCTGTGTGAGTGTTCGTGACCC < 41bp 0.723762217503543 0.516615595162868 0.14373267 0.045574933 prediction 0.41429324468135 Functional Loss - ETV6 ENSG00000139083 CDS Human protein_coding chr12:11905510 chr12:11905513 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_92319 0 0 0 0 1 ETV6 chr12:11905513 5'GT 11905513 Upstream 1bp
chr3 197882512 197882512 1 + T C COAD 197882511 + 197882491 197882531 41 AGGTTCTCCGCCGGCTCTGGCTGCGGGCGGCCCTCATCTAA AGGTTCTCCGCCGGCTCTGGCCGCGGGCGGCCCTCATCTAA < 41bp 0.725731818874576 0.518588458135988 0.43830553 0.8370536 prediction 0.414286721477177 Functional Loss - FAM157A ENSG00000236438 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:197882511 chr3:197882512 . . 0 22 hm5C_associated_SNPs_92321 0 0 0 0 1 FAM157A chr3:197882493 3'AG 197882493 Downstream 20bp
chr10 101603645 101603645 1 + A T UCEC 101603641 + 101603621 101603661 41 TGAGCGAATAACTGAGTACACAAAAGTGGAAAATGAGGTAA TGAGCGAATAACTGAGTACACAAATGTGGAAAATGAGGTAA < 41bp 0.70714220429541 0.390668453465365 0.28484082 0.1577962 prediction 0.414284408590819 Functional Loss - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101603641 chr10:101603645 nonsynonymous SNV 0.991 1 25 hm5C_associated_SNPs_92323 0 0 1 0 2 ABCC2 chr10:101603556 3'AG 101603556 Downstream 90bp
chr10 101603645 101603645 1 + A T UCEC 101603641 + 101603621 101603661 41 TGAGCGAATAACTGAGTACACAAAAGTGGAAAATGAGGTAA TGAGCGAATAACTGAGTACACAAATGTGGAAAATGAGGTAA < 41bp 0.70714220429541 0.390668453465365 0.28484082 0.1577962 prediction 0.414284408590819 Functional Loss - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101603641 chr10:101603645 nonsynonymous SNV 0.991 1 25 hm5C_associated_SNPs_92323 0 0 1 0 2 ABCC2 chr10:101603657 5'GT 101603657 Upstream 13bp
chr17 45363729 45363729 1 + C T UCEC 45363727 + 45363707 45363747 41 AGTGAAGAAGCAGAGTGTGTCACGGAACCGAGATGCCCCAG AGTGAAGAAGCAGAGTGTGTCATGGAACCGAGATGCCCCAG < 41bp 0.859113502300352 0.651971756284554 0.8897013 0.78041816 prediction 0.414283492031596 Functional Loss - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45363727 chr17:45363729 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_92324 1 0 0 0 1 ITGB3 chr17:45363788 5'GT 45363788 Upstream 60bp
chr7 123267202 123267202 1 + G T KIRC 123267200 + 123267180 123267220 41 TTTGGCGGATGATGGGGCGTCGGTGCTGTTTGAGGCAGCAG TTTGGCGGATGATGGGGCGTCGTTGCTGTTTGAGGCAGCAG < 41bp 0.707141545247916 0.346212143914718 0.39836693 0.2736494 prediction 0.414283090495832 Functional Loss - ASB15 ENSG00000146809 CDS Human protein_coding chr7:123267200 chr7:123267202 nonsynonymous SNV 0.350 0 23 hm5C_associated_SNPs_92325 0 0 0 0 1 ASB15 chr7:123267164 3'AG 123267164 Downstream 39bp
chr20 44049033 44049033 1 + G C LUAD 44049029 + 44049009 44049049 41 GGAGCCCTGCCCCCTGGCTTCAGAGAGCCGAGTCTATGTGG GGAGCCCTGCCCCCTGGCTTCAGACAGCCGAGTCTATGTGG < 41bp 0.86244467843454 0.655305736990608 0.8878269 0.21690115 prediction 0.414277882887863 Functional Loss - PIGT ENSG00000124155 CDS Human protein_coding chr20:44049029 chr20:44049033 nonsynonymous SNV 0.970 0 25 hm5C_associated_SNPs_92327 0 0 1 1 2 PIGT chr20:44048972 3'AG 44048972 Downstream 62bp
chr20 44049033 44049033 1 + G C LUAD 44049029 + 44049009 44049049 41 GGAGCCCTGCCCCCTGGCTTCAGAGAGCCGAGTCTATGTGG GGAGCCCTGCCCCCTGGCTTCAGACAGCCGAGTCTATGTGG < 41bp 0.86244467843454 0.655305736990608 0.8878269 0.21690115 prediction 0.414277882887863 Functional Loss - PIGT ENSG00000124155 CDS Human protein_coding chr20:44049029 chr20:44049033 nonsynonymous SNV 0.970 0 25 hm5C_associated_SNPs_92327 0 0 1 1 2 PIGT chr20:44049069 5'GT 44049069 Upstream 37bp
chr5 176295849 176295849 1 + G A GBM 176295846 + 176295826 176295866 41 GGACCCCAATGTATACATCACGCGGGAGCACAGCCTGGTGG GGACCCCAATGTATACATCACGCAGGAGCACAGCCTGGTGG < 41bp 0.825433552827082 0.618295465164293 0.455435 0.10386714 prediction 0.414276175325577 Functional Loss - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176295846 chr5:176295849 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_92328 0 0 0 0 1 UNC5A chr5:176295785 3'AG 176295785 Downstream 65bp
chr19 582775 582775 1 + A C rs8637 582771 + 582751 582791 41 TGGCCCGAGGACGCTCCCTGCTCCACGTCTGCGCCGCCGCC TGGCCCGAGGACGCTCCCTGCTCCCCGTCTGCGCCGCCGCC < 41bp 0.707137334151695 0.302243902438737 0.8940474 0.15510842 prediction 0.414274668303389 Functional Loss - BSG ENSG00000172270 UTR3 Human protein_coding chr19:582771 chr19:582775 . . 0 25 hm5C_associated_SNPs_92330 0 0 1 0 1 BSG chr19:582750 3'AG 582750 Downstream 26bp
chr21 47412705 47412705 1 + G A rs35059000 47412702 + 47412682 47412722 41 ACCACGGGGGACCCCAGGCACGCGGGGACCAAGAGGAGACC ACCACGGGGGACCCCAGGCACGCAGGGACCAAGAGGAGACC < 41bp 0.824273246028061 0.617136901540012 0.5531143 0.11753142 prediction 0.414272688976098 Functional Loss - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47412702 chr21:47412705 nonsynonymous SNV 0.218 4 24 hm5C_associated_SNPs_92331 2 0 1 0 1 COL6A1 chr21:47412724 5'GT 47412724 Upstream 20bp
chr7 48083137 48083137 1 + C T CESC 48083134 + 48083114 48083154 41 GCTCTCCAGTGGCCTACTCCCTGCCAGACTGGTATATCCAC GCTCTCCAGTGGCCTACTCCCTGTCAGACTGGTATATCCAC < 41bp 0.736570527709637 0.529434888142554 0.08914146 0.07199326 prediction 0.414271279134167 Functional Loss - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48083134 chr7:48083137 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_92332 0 0 0 0 1 C7orf57 chr7:48083078 3'AG 48083078 Downstream 60bp
chr15 68121606 68121606 1 + C T UCEC 68121604 + 68121584 68121624 41 ACGTCTGCACCCCCGAGGCCCACGGTAACGCCTGTCGCGGC ACGTCTGCACCCCCGAGGCCCATGGTAACGCCTGTCGCGGC < 41bp 0.819308492318764 0.612175605130136 0.51769507 0.62784046 prediction 0.414265774377255 Functional Loss - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68121604 chr15:68121606 synonymous SNV . 0 23 hm5C_associated_SNPs_92335 0 0 0 0 2 SKOR1 chr15:68121517 3'AG 68121517 Downstream 90bp
chr15 68121606 68121606 1 + C T UCEC 68121604 + 68121584 68121624 41 ACGTCTGCACCCCCGAGGCCCACGGTAACGCCTGTCGCGGC ACGTCTGCACCCCCGAGGCCCATGGTAACGCCTGTCGCGGC < 41bp 0.819308492318764 0.612175605130136 0.51769507 0.62784046 prediction 0.414265774377255 Functional Loss - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68121604 chr15:68121606 synonymous SNV . 0 23 hm5C_associated_SNPs_92335 0 0 0 0 2 SKOR1 chr15:68121607 5'GT 68121607 Upstream 2bp
chr11 66325382 66325382 1 + C T rs144546392 66325379 + 66325359 66325399 41 CACCGGCCTGCCTTCATGCCCTCCGAGGGCAAGCTGGTCTC CACCGGCCTGCCTTCATGCCCTCTGAGGGCAAGCTGGTCTC < 41bp 0.707132850599291 0.488251098043919 0.17537859 0.03057149 prediction 0.414265701198583 Functional Loss - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66325379 chr11:66325382 unknown . 0 24 hm5C_associated_SNPs_92336 0 0 0 0 1 ACTN3 chr11:66325400 5'GT 66325400 Upstream 19bp
chr19 2994921 2994921 1 + G A rs34551565 2994918 + 2994898 2994938 41 GTGCCTGAGATGTCTCCAGTCACGTGCTGTGACGTCTCTTC GTGCCTGAGATGTCTCCAGTCACATGCTGTGACGTCTCTTC < 41bp 0.811559567781686 0.604426733098316 0.74848 0.44470435 prediction 0.414265669366741 Functional Loss - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2994918 chr19:2994921 synonymous SNV . 0 24 hm5C_associated_SNPs_92337 0 0 0 0 1 TLE6 chr19:2994898 3'AG 2994898 Downstream 24bp
chr5 122435364 122435364 1 + C T COAD 122435362 + 122435342 122435382 41 CCCGCAGGTTGCGACATGTGCGCGGACAACCGCAACGGCGA CCCGCAGGTTGCGACATGTGCGTGGACAACCGCAACGGCGA < 41bp 0.840390368366475 0.63326045311097 0.3793056 0.23658091 prediction 0.41425983051101 Functional Loss - PRDM6 ENSG00000061455 CDS Human protein_coding chr5:122435362 chr5:122435364 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_92339 0 0 0 0 1 PRDM6 chr5:122435349 3'AG 122435349 Downstream 16bp
chr13 114503880 114503880 1 + C T BLCA 114503877 + 114503857 114503897 41 TACTGCTGTGACCTCTATGCCTGCGGGAGGTGAGGGGCACC TACTGCTGTGACCTCTATGCCTGTGGGAGGTGAGGGGCACC < 41bp 0.715765826217476 0.508637826719957 0.47079676 0.26850063 prediction 0.414255998995039 Functional Loss - TMEM255B ENSG00000184497 CDS Human protein_coding chr13:114503877 chr13:114503880 synonymous SNV . 0 24 hm5C_associated_SNPs_92343 0 0 0 0 2 TMEM255B chr13:114503800 3'AG 114503800 Downstream 81bp
chr13 114503880 114503880 1 + C T BLCA 114503877 + 114503857 114503897 41 TACTGCTGTGACCTCTATGCCTGCGGGAGGTGAGGGGCACC TACTGCTGTGACCTCTATGCCTGTGGGAGGTGAGGGGCACC < 41bp 0.715765826217476 0.508637826719957 0.47079676 0.26850063 prediction 0.414255998995039 Functional Loss - TMEM255B ENSG00000184497 CDS Human protein_coding chr13:114503877 chr13:114503880 synonymous SNV . 0 24 hm5C_associated_SNPs_92343 0 0 0 0 2 TMEM255B chr13:114503885 5'GT 114503885 Upstream 6bp
chr1 43448804 43448804 1 + C T rs150136857 43448802 + 43448782 43448822 41 CTTTGTATTTTTAGTTTCTCCACGTTGGTCAGGCTGGCCTC CTTTGTATTTTTAGTTTCTCCATGTTGGTCAGGCTGGCCTC < 41bp 0.707125757260704 0.482442963073436 0.3054275 0.38987586 prediction 0.414251514521408 Functional Loss - SLC2A1-AS1 ENSG00000227533 ncRNA_exonic Human lincRNA chr1:43448802 chr1:43448804 . . 0 23 hm5C_associated_SNPs_92344 0 0 0 0 1 SLC2A1-AS1 chr1:43448796 3'AG 43448796 Downstream 9bp
chr10 134015457 134015457 1 + G A LUAD 134015454 + 134015434 134015474 41 CCTTCTTGTTCCCCAGGCCTCTGGGAAGATGGACGAGAATG CCTTCTTGTTCCCCAGGCCTCTGAGAAGATGGACGAGAATG < 41bp 0.819854649798302 0.612729819037526 0.21851292 0.1457218 prediction 0.414249661521551 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134015454 chr10:134015457 nonsynonymous SNV 0.903 4 24 hm5C_associated_SNPs_92346 0 0 0 0 1 DPYSL4 chr10:134015450 3'AG 134015450 Downstream 8bp
chr12 124796466 124796466 1 + G A SKCM 124796463 + 124796443 124796483 41 AGGTGAACCCGGAACCCACGCATGAGATCCGGTGAGTGGGC AGGTGAACCCGGAACCCACGCATAAGATCCGGTGAGTGGGC < 41bp 0.707124409006197 0.455078761009382 0.6768329 0.21744317 prediction 0.414248818012394 Functional Loss - RFLNA ENSG00000178882 CDS Human protein_coding chr12:124796463 chr12:124796466 nonsynonymous SNV 0.248 4 24 hm5C_associated_SNPs_92347 0 0 0 0 1 RFLNA chr12:124796473 5'GT 124796473 Upstream 8bp
chr12 129442131 129442131 1 + C T rs141781055 129442129 + 129442109 129442149 41 CGGTATTGGCCAGGAACATCCCCGGGAATGCTGCCGTGGTG CGGTATTGGCCAGGAACATCCCTGGGAATGCTGCCGTGGTG < 41bp 0.7071239048178 0.423567907655406 0.56102204 0.34688264 prediction 0.4142478096356 Functional Loss - GLT1D1 ENSG00000151948 CDS Human protein_coding chr12:129442129 chr12:129442131 synonymous SNV . 0 23 hm5C_associated_SNPs_92348 0 0 0 3 2 GLT1D1 chr12:129442090 3'AG 129442090 Downstream 42bp
chr12 129442131 129442131 1 + C T rs141781055 129442129 + 129442109 129442149 41 CGGTATTGGCCAGGAACATCCCCGGGAATGCTGCCGTGGTG CGGTATTGGCCAGGAACATCCCTGGGAATGCTGCCGTGGTG < 41bp 0.7071239048178 0.423567907655406 0.56102204 0.34688264 prediction 0.4142478096356 Functional Loss - GLT1D1 ENSG00000151948 CDS Human protein_coding chr12:129442129 chr12:129442131 synonymous SNV . 0 23 hm5C_associated_SNPs_92348 0 0 0 3 2 GLT1D1 chr12:129442188 5'GT 129442188 Upstream 58bp
chr15 89195347 89195347 1 + C T UCEC 89195344 + 89195324 89195364 41 CATGTCTTCCTGGCCAGATCCTGCAGCTCCTGAAAGGCAAG CATGTCTTCCTGGCCAGATCCTGTAGCTCCTGAAAGGCAAG < 41bp 0.707115412666383 0.496486151095246 0.8427144 0.74966574 prediction 0.414230825332766 Functional Loss - ISG20 ENSG00000172183 CDS Human protein_coding chr15:89195344 chr15:89195347 stopgain 1.000 0 24 hm5C_associated_SNPs_92355 0 0 0 2 1 ISG20 chr15:89195341 3'AG 89195341 Downstream 7bp
chr20 26061871 26061871 1 + G A UCEC 26061868 + 26061848 26061888 41 GGAACGTGGAGGAGGAGGAACACGAAGTGGGGATCTCCACT GGAACGTGGAGGAGGAGGAACACAAAGTGGGGATCTCCACT < 41bp 0.831207069183144 0.624091761929917 0.9057226 0.88402885 prediction 0.414230614506453 Functional Loss - FAM182A ENSG00000125804 ncRNA_exonic Human processed_transcript chr20:26061868 chr20:26061871 . . 0 24 hm5C_associated_SNPs_92357 0 0 0 0 1 FAM182A chr20:26061800 3'AG 26061800 Downstream 72bp
chr5 180424410 180424410 1 + G A SKCM 180424407 + 180424387 180424427 41 TGGAGATCTCCATTATAGTCCAGGAAAATGCTGGGAGCATA TGGAGATCTCCATTATAGTCCAGAAAAATGCTGGGAGCATA < 41bp 0.70711029381745 0.461254478077038 0.21356267 0.082057714 prediction 0.414220587634901 Functional Loss - BTNL3 ENSG00000168903 CDS Human protein_coding chr5:180424407 chr5:180424410 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_92359 0 0 0 0 1 BTNL3 chr5:180424488 5'GT 180424488 Upstream 79bp
chr19 10381886 10381886 1 + C T LUSC 10381884 + 10381864 10381904 41 TGCCCGCACTCCTGGTCCTGCTCGGGGCTCTGTTCCCAGGT TGCCCGCACTCCTGGTCCTGCTTGGGGCTCTGTTCCCAGGT < 41bp 0.796735690372394 0.589626288532413 0.28820127 0.302886 prediction 0.414218803679962 Functional Loss - ICAM1 ENSG00000090339 CDS Human protein_coding chr19:10381884 chr19:10381886 synonymous SNV . 0 23 hm5C_associated_SNPs_92360 0 0 1 0 1 ICAM1 chr19:10381902 5'GT 10381902 Upstream 17bp
chr17 8193159 8193159 1 + G A rs552055941 8193156 + 8193136 8193176 41 ACAACAGGTCATCTCTTGGCCCCGAAAATCTGTCACCTGCA ACAACAGGTCATCTCTTGGCCCCAAAAATCTGTCACCTGCA < 41bp 0.767736897847645 0.560631817738599 0.02224812 0.014011413 prediction 0.414210160218093 Functional Loss - RANGRF ENSG00000108961 CDS Human protein_coding chr17:8193156 chr17:8193159 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_92364 0 0 1 2 1 RANGRF chr17:8193131 3'AG 8193131 Downstream 29bp
chr7 94049587 94049587 1 + C T HNSC 94049585 + 94049565 94049605 41 TCCTGCTGGTCCTGCTGGTCCTCGGGGAAGCCCTGTAAGTA TCCTGCTGGTCCTGCTGGTCCTTGGGGAAGCCCTGTAAGTA < 41bp 0.707101856096717 0.425714121735282 0.089485824 0.108076125 prediction 0.414203712193434 Functional Loss - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94049585 chr7:94049587 nonsynonymous SNV 0.963 5 23 hm5C_associated_SNPs_92366 0 0 0 0 2 COL1A2 chr7:94049545 3'AG 94049545 Downstream 43bp
chr7 94049587 94049587 1 + C T HNSC 94049585 + 94049565 94049605 41 TCCTGCTGGTCCTGCTGGTCCTCGGGGAAGCCCTGTAAGTA TCCTGCTGGTCCTGCTGGTCCTTGGGGAAGCCCTGTAAGTA < 41bp 0.707101856096717 0.425714121735282 0.089485824 0.108076125 prediction 0.414203712193434 Functional Loss - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94049585 chr7:94049587 nonsynonymous SNV 0.963 5 23 hm5C_associated_SNPs_92366 0 0 0 0 2 COL1A2 chr7:94049598 5'GT 94049598 Upstream 12bp
chr8 24261589 24261589 1 + C T SKCM 24261586 + 24261566 24261606 41 AACTGATTGCGGAGGAGATGCTCCAAACCATACCACGTAAG AACTGATTGCGGAGGAGATGCTCTAAACCATACCACGTAAG < 41bp 0.76175887288682 0.554657370762872 0.9342889 0.91118133 prediction 0.414203004247897 Functional Loss - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24261586 chr8:24261589 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_92367 0 0 0 0 2 ADAMDEC1 chr8:24261516 3'AG 24261516 Downstream 74bp
chr8 24261589 24261589 1 + C T SKCM 24261586 + 24261566 24261606 41 AACTGATTGCGGAGGAGATGCTCCAAACCATACCACGTAAG AACTGATTGCGGAGGAGATGCTCTAAACCATACCACGTAAG < 41bp 0.76175887288682 0.554657370762872 0.9342889 0.91118133 prediction 0.414203004247897 Functional Loss - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24261586 chr8:24261589 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_92367 0 0 0 0 2 ADAMDEC1 chr8:24261601 5'GT 24261601 Upstream 13bp
chr12 93966765 93966765 1 + C T UCEC 93966763 + 93966743 93966783 41 GGGTCGGCGGAGGAGCCATCCCCGCAGGCGGCGCGTCTGGC GGGTCGGCGGAGGAGCCATCCCTGCAGGCGGCGCGTCTGGC < 41bp 0.707097189916718 0.453896760111057 0.2861467 0.31542504 prediction 0.414194379833436 Functional Loss - SOCS2 ENSG00000120833 CDS Human protein_coding chr12:93966763 chr12:93966765 nonsynonymous SNV 0.933 0 23 hm5C_associated_SNPs_92372 0 0 1 0 1 SOCS2 chr12:93966812 5'GT 93966812 Upstream 48bp
chrX 152027424 152027424 1 + G A UCEC 152027421 + 152027401 152027441 41 AGAGTGAATTACATTGGCACCAAGAATGTCATTGAAACTTG AGAGTGAATTACATTGGCACCAAAAATGTCATTGAAACTTG < 41bp 0.793280420957289 0.5861860461727 0.06583923 0.05276984 prediction 0.414188749569179 Functional Loss - NSDHL ENSG00000147383 CDS Human protein_coding chrX:152027421 chrX:152027424 synonymous SNV . 0 24 hm5C_associated_SNPs_92373 0 0 1 0 1 NSDHL chrX:152027460 5'GT 152027460 Upstream 37bp
chr3 130285597 130285597 1 + G A SKCM 130285594 + 130285574 130285614 41 CTATCTGCTTATCGATGGCTCAGGGAGCACCCAGGCCACAG CTATCTGCTTATCGATGGCTCAGAGAGCACCCAGGCCACAG < 41bp 0.707093591556684 0.45852505874694 0.86063886 0.32181534 prediction 0.414187183113368 Functional Loss - COL6A6 ENSG00000206384 CDS Human protein_coding chr3:130285594 chr3:130285597 nonsynonymous SNV 0.423 4 24 hm5C_associated_SNPs_92374 0 0 0 0 1 COL6A6 chr3:130285546 3'AG 130285546 Downstream 52bp
chr1 205039621 205039621 1 + G T UCEC 205039618 + 205039598 205039638 41 TCCTCAGAGATGAACGTGACCTGGGAACCCGTGCAGCAGGA TCCTCAGAGATGAACGTGACCTGTGAACCCGTGCAGCAGGA < 41bp 0.707089227829967 0.301569521171253 0.3254652 0.059938937 prediction 0.414178455659933 Functional Loss - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205039618 chr1:205039621 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_92376 0 0 0 0 2 CNTN2 chr1:205039554 3'AG 205039554 Downstream 68bp
chr1 205039621 205039621 1 + G T UCEC 205039618 + 205039598 205039638 41 TCCTCAGAGATGAACGTGACCTGGGAACCCGTGCAGCAGGA TCCTCAGAGATGAACGTGACCTGTGAACCCGTGCAGCAGGA < 41bp 0.707089227829967 0.301569521171253 0.3254652 0.059938937 prediction 0.414178455659933 Functional Loss - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205039618 chr1:205039621 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_92376 0 0 0 0 2 CNTN2 chr1:205039666 5'GT 205039666 Upstream 46bp
chrX 152770135 152770135 1 + G T SARC 152770132 + 152770112 152770152 41 TGTCTCTGCTGGCCCTGAGCCAGGCCCTGCCCTTTGAGCAG TGTCTCTGCTGGCCCTGAGCCAGTCCCTGCCCTTTGAGCAG < 41bp 0.707084890495432 0.293718629825753 0.76955676 0.1252582 prediction 0.414169780990864 Functional Loss - BGN ENSG00000182492 CDS Human protein_coding chrX:152770132 chrX:152770135 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_92378 0 0 0 0 1 BGN chrX:152770079 3'AG 152770079 Downstream 57bp
chr6 170169701 170169701 1 + G A CESC 170169698 + 170169678 170169718 41 ATAAGAGATCATTTAAGCCACGGGGAGATCAACTTACATGA ATAAGAGATCATTTAAGCCACGGAGAGATCAACTTACATGA < 41bp 0.810873989958389 0.60378917392726 0.75380224 0.31506854 prediction 0.414169632062257 Functional Loss - ERMARD ENSG00000130023 CDS Human protein_coding chr6:170169698 chr6:170169701 synonymous SNV . 0 24 hm5C_associated_SNPs_92379 0 0 1 0 1 ERMARD chr6:170169636 3'AG 170169636 Downstream 66bp
chr16 50750505 50750505 1 + G A BLCA 50750502 + 50750482 50750522 41 TATTTTGTCTCTTTAGTTTGCGCGATAACAATATCTCAGAC TATTTTGTCTCTTTAGTTTGCGCAATAACAATATCTCAGAC < 41bp 0.707081150720298 0.487505277538479 0.15688592 0.04639575 prediction 0.414162301440597 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50750502 chr16:50750505 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_92383 0 0 0 0 1 NOD2 chr16:50750498 3'AG 50750498 Downstream 8bp
chr16 50750504 50750504 1 + C T UCEC 50750502 + 50750482 50750522 41 TATTTTGTCTCTTTAGTTTGCGCGATAACAATATCTCAGAC TATTTTGTCTCTTTAGTTTGCGTGATAACAATATCTCAGAC < 41bp 0.707081150720298 0.437862885199355 0.15688592 0.2274172 prediction 0.414162301440597 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50750502 chr16:50750504 synonymous SNV . 0 23 hm5C_associated_SNPs_92384 0 0 0 0 1 NOD2 chr16:50750498 3'AG 50750498 Downstream 7bp
chr11 66235660 66235660 1 + G A UCEC 66235657 + 66235637 66235677 41 GAACCTCAGACCTCCAGCACCGGGGGAACAAGGGCTCTTGC GAACCTCAGACCTCCAGCACCGGAGGAACAAGGGCTCTTGC < 41bp 0.803624751530051 0.596546503894767 0.9445522 0.9290309 prediction 0.414156495270568 Functional Loss - PELI3 ENSG00000174516 CDS Human protein_coding chr11:66235657 chr11:66235660 nonsynonymous SNV 0.117 0 24 hm5C_associated_SNPs_92386 0 0 0 0 2 PELI3 chr11:66235599 3'AG 66235599 Downstream 62bp
chr11 66235660 66235660 1 + G A UCEC 66235657 + 66235637 66235677 41 GAACCTCAGACCTCCAGCACCGGGGGAACAAGGGCTCTTGC GAACCTCAGACCTCCAGCACCGGAGGAACAAGGGCTCTTGC < 41bp 0.803624751530051 0.596546503894767 0.9445522 0.9290309 prediction 0.414156495270568 Functional Loss - PELI3 ENSG00000174516 CDS Human protein_coding chr11:66235657 chr11:66235660 nonsynonymous SNV 0.117 0 24 hm5C_associated_SNPs_92386 0 0 0 0 2 PELI3 chr11:66235751 5'GT 66235751 Upstream 92bp
chrX 47030498 47030498 1 + C T UCEC 47030495 + 47030475 47030515 41 CGGCGGCACAGGCACAGCCCCACCGGCCCGCCAGGCTTCCC CGGCGGCACAGGCACAGCCCCACTGGCCCGCCAGGCTTCCC < 41bp 0.714586257454028 0.507509453925742 0.16459495 0.06621468 prediction 0.414153607056573 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030495 chrX:47030498 synonymous SNV . 0 24 hm5C_associated_SNPs_92388 0 0 0 0 1 RBM10 chrX:47030427 3'AG 47030427 Downstream 72bp
chr11 107518311 107518311 1 + G A SKCM 107518308 + 107518288 107518328 41 ACTTTCGAGGAATGGGACTTCTGGGACTGTACAATTTGCAG ACTTTCGAGGAATGGGACTTCTGAGACTGTACAATTTGCAG < 41bp 0.78374417587804 0.576669453679191 0.07003775 0.20998645 prediction 0.414149444397697 Functional Loss - ELMOD1 ENSG00000110675 CDS Human protein_coding chr11:107518308 chr11:107518311 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_92390 0 0 1 0 1 ELMOD1 chr11:107518327 5'GT 107518327 Upstream 17bp
chr21 45220495 45220495 1 + A C UCEC 45220491 + 45220471 45220511 41 AGCGTCTCTACAAAGTGATCCGGAAGTGAGTGTGTGAGGGC AGCGTCTCTACAAAGTGATCCGGACGTGAGTGTGTGAGGGC < 41bp 0.707073833677218 0.29559155590065 0.88573563 0.8752254 prediction 0.414147667354436 Functional Loss - RRP1 ENSG00000160214 CDS Human protein_coding chr21:45220491 chr21:45220495 nonsynonymous SNV 0.883 2 25 hm5C_associated_SNPs_92391 0 0 1 0 2 RRP1 chr21:45220398 3'AG 45220398 Downstream 98bp
chr21 45220495 45220495 1 + A C UCEC 45220491 + 45220471 45220511 41 AGCGTCTCTACAAAGTGATCCGGAAGTGAGTGTGTGAGGGC AGCGTCTCTACAAAGTGATCCGGACGTGAGTGTGTGAGGGC < 41bp 0.707073833677218 0.29559155590065 0.88573563 0.8752254 prediction 0.414147667354436 Functional Loss - RRP1 ENSG00000160214 CDS Human protein_coding chr21:45220491 chr21:45220495 nonsynonymous SNV 0.883 2 25 hm5C_associated_SNPs_92391 0 0 1 0 2 RRP1 chr21:45220495 5'GT 45220495 Upstream 1bp
chr15 54914588 54914588 1 + G T LUSC 54914585 + 54914565 54914605 41 TGTGGACATCACTGCCACCCCAGGAACGGGAGATCATAAAG TGTGGACATCACTGCCACCCCAGTAACGGGAGATCATAAAG < 41bp 0.70707337766691 0.356436905908323 0.26957557 0.06783885 prediction 0.414146755333821 Functional Loss - UNC13C ENSG00000137766 CDS Human protein_coding chr15:54914585 chr15:54914588 nonsynonymous SNV 0.040 2 24 hm5C_associated_SNPs_92392 0 0 0 0 2 UNC13C chr15:54914525 3'AG 54914525 Downstream 64bp
chr15 54914588 54914588 1 + G T LUSC 54914585 + 54914565 54914605 41 TGTGGACATCACTGCCACCCCAGGAACGGGAGATCATAAAG TGTGGACATCACTGCCACCCCAGTAACGGGAGATCATAAAG < 41bp 0.70707337766691 0.356436905908323 0.26957557 0.06783885 prediction 0.414146755333821 Functional Loss - UNC13C ENSG00000137766 CDS Human protein_coding chr15:54914585 chr15:54914588 nonsynonymous SNV 0.040 2 24 hm5C_associated_SNPs_92392 0 0 0 0 2 UNC13C chr15:54914617 5'GT 54914617 Upstream 30bp
chr15 54914587 54914587 1 + G T LUSC 54914585 + 54914565 54914605 41 TGTGGACATCACTGCCACCCCAGGAACGGGAGATCATAAAG TGTGGACATCACTGCCACCCCATGAACGGGAGATCATAAAG < 41bp 0.70707337766691 0.401988892363681 0.26957557 0.09167114 prediction 0.414146755333821 Functional Loss - UNC13C ENSG00000137766 CDS Human protein_coding chr15:54914585 chr15:54914587 stopgain 0.040 1 23 hm5C_associated_SNPs_92393 0 0 0 0 2 UNC13C chr15:54914525 3'AG 54914525 Downstream 63bp
chr15 54914587 54914587 1 + G T LUSC 54914585 + 54914565 54914605 41 TGTGGACATCACTGCCACCCCAGGAACGGGAGATCATAAAG TGTGGACATCACTGCCACCCCATGAACGGGAGATCATAAAG < 41bp 0.70707337766691 0.401988892363681 0.26957557 0.09167114 prediction 0.414146755333821 Functional Loss - UNC13C ENSG00000137766 CDS Human protein_coding chr15:54914585 chr15:54914587 stopgain 0.040 1 23 hm5C_associated_SNPs_92393 0 0 0 0 2 UNC13C chr15:54914617 5'GT 54914617 Upstream 31bp
chr1 8025395 8025395 1 + C T STAD 8025392 + 8025372 8025412 41 TCTTTCTCGTAGATTAAGGTCACCGTTGCAGGCCTGGCTGG TCTTTCTCGTAGATTAAGGTCACTGTTGCAGGCCTGGCTGG < 41bp 0.707071095036842 0.486226691152438 0.038895816 0.01721403 prediction 0.414142190073684 Functional Loss - PARK7 ENSG00000116288 CDS Human protein_coding chr1:8025392 chr1:8025395 synonymous SNV . 0 24 hm5C_associated_SNPs_92396 0 0 1 0 2 PARK7 chr1:8025384 3'AG 8025384 Downstream 12bp
chr1 8025395 8025395 1 + C T STAD 8025392 + 8025372 8025412 41 TCTTTCTCGTAGATTAAGGTCACCGTTGCAGGCCTGGCTGG TCTTTCTCGTAGATTAAGGTCACTGTTGCAGGCCTGGCTGG < 41bp 0.707071095036842 0.486226691152438 0.038895816 0.01721403 prediction 0.414142190073684 Functional Loss - PARK7 ENSG00000116288 CDS Human protein_coding chr1:8025392 chr1:8025395 synonymous SNV . 0 24 hm5C_associated_SNPs_92396 0 0 1 0 2 PARK7 chr1:8025485 5'GT 8025485 Upstream 91bp
chr5 76249446 76249446 1 + C T UCEC 76249443 + 76249423 76249463 41 CAGCTGAGGGAAGCGGCGGACTACGATCCTTTCCTGCTCTT CAGCTGAGGGAAGCGGCGGACTATGATCCTTTCCTGCTCTT < 41bp 0.707067340380252 0.494035159201067 0.78313404 0.33779588 prediction 0.414134680760504 Functional Loss - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76249443 chr5:76249446 synonymous SNV . 0 24 hm5C_associated_SNPs_92400 0 0 0 0 2 CRHBP chr5:76249426 3'AG 76249426 Downstream 21bp
chr5 76249446 76249446 1 + C T UCEC 76249443 + 76249423 76249463 41 CAGCTGAGGGAAGCGGCGGACTACGATCCTTTCCTGCTCTT CAGCTGAGGGAAGCGGCGGACTATGATCCTTTCCTGCTCTT < 41bp 0.707067340380252 0.494035159201067 0.78313404 0.33779588 prediction 0.414134680760504 Functional Loss - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76249443 chr5:76249446 synonymous SNV . 0 24 hm5C_associated_SNPs_92400 0 0 0 0 2 CRHBP chr5:76249519 5'GT 76249519 Upstream 74bp
chr9 98638242 98638242 1 - T A rs141071823 98638246 - 98638226 98638266 41 AGGACAGCAAGGTGGCTGGCCGGCAGGCCAATGGCGGCCAA AGGACAGCAAGGTGGCTGGCCGGCTGGCCAATGGCGGCCAA < 41bp 0.862295450958596 0.655232667336906 0.3226419 0.22745499 prediction 0.41412556724338 Functional Loss - LINC00476 ENSG00000175611 ncRNA_exonic Human processed_transcript chr9:98638246 chr9:98638242 . . 0 25 hm5C_associated_SNPs_92403 0 0 0 0 1 LINC00476 chr9:98638147 5'GT 98638147 Upstream 96bp
chr3 111700728 111700728 1 + C T CESC 111700725 + 111700705 111700745 41 GGCAAAAGTCCAGGAATTATCTTCATCCCTGGCTATCTTTC GGCAAAAGTCCAGGAATTATCTTTATCCCTGGCTATCTTTC < 41bp 0.757282237869559 0.550219633651242 0.21068695 0.14332232 prediction 0.414125208436634 Functional Loss - ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111700725 chr3:111700728 synonymous SNV . 0 24 hm5C_associated_SNPs_92404 0 0 1 0 2 ABHD10 chr3:111700631 3'AG 111700631 Downstream 98bp
chr3 111700728 111700728 1 + C T CESC 111700725 + 111700705 111700745 41 GGCAAAAGTCCAGGAATTATCTTCATCCCTGGCTATCTTTC GGCAAAAGTCCAGGAATTATCTTTATCCCTGGCTATCTTTC < 41bp 0.757282237869559 0.550219633651242 0.21068695 0.14332232 prediction 0.414125208436634 Functional Loss - ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111700725 chr3:111700728 synonymous SNV . 0 24 hm5C_associated_SNPs_92404 0 0 1 0 2 ABHD10 chr3:111700814 5'GT 111700814 Upstream 87bp
chr9 140500215 140500215 1 + G A rs200306122 140500212 + 140500192 140500232 41 AGATCAGCCTGAGCCACGGCCGCGTCGTCTACAGCCCCGGG AGATCAGCCTGAGCCACGGCCGCATCGTCTACAGCCCCGGG < 41bp 0.707060647031501 0.461561279486701 0.20063972 0.110717714 prediction 0.414121294063003 Functional Loss - ARRDC1 ENSG00000197070 CDS Human protein_coding chr9:140500212 chr9:140500215 nonsynonymous SNV 0.962 1 24 hm5C_associated_SNPs_92407 0 0 1 0 1 ARRDC1 chr9:140500287 5'GT 140500287 Upstream 73bp
chr12 96617428 96617428 1 + G A COAD 96617425 + 96617405 96617445 41 GAGCATTTGATCTGCTGGACCTCGAACGATGGTGAATTCAA GAGCATTTGATCTGCTGGACCTCAAACGATGGTGAATTCAA < 41bp 0.788828993875877 0.581769286347518 0.21376497 0.16409236 prediction 0.414119415056719 Functional Loss - ELK3 ENSG00000111145 CDS Human antisense chr12:96617425 chr12:96617428 synonymous SNV . 0 24 hm5C_associated_SNPs_92408 0 0 1 0 1 ELK3 chr12:96617343 3'AG 96617343 Downstream 86bp
chr4 647918 647918 1 - C T LGG 647921 - 647901 647941 41 GGCCATCAGGCGTGCGTGGGCCCGAGTACGGCTGGGACTCT GGCCATCAGGCGTGCGTGGGCCCAAGTACGGCTGGGACTCT < 41bp 0.799782356298658 0.592725560789157 0.34471297 0.22881001 prediction 0.414113591019002 Functional Loss - PDE6B ENSG00000133256 CDS Human antisense chr4:647921 chr4:647918 nonsynonymous SNV 0.936 0 24 hm5C_associated_SNPs_92410 0 0 0 0 2 PDE6B chr4:647854 5'GT 647854 Upstream 65bp
chr4 647918 647918 1 - C T LGG 647921 - 647901 647941 41 GGCCATCAGGCGTGCGTGGGCCCGAGTACGGCTGGGACTCT GGCCATCAGGCGTGCGTGGGCCCAAGTACGGCTGGGACTCT < 41bp 0.799782356298658 0.592725560789157 0.34471297 0.22881001 prediction 0.414113591019002 Functional Loss - PDE6B ENSG00000133256 CDS Human antisense chr4:647921 chr4:647918 nonsynonymous SNV 0.936 0 24 hm5C_associated_SNPs_92410 0 0 0 0 2 PDE6B chr4:648002 3'AG 648002 Downstream 85bp
chrX 86877241 86877241 1 + G A UCEC 86877238 + 86877218 86877258 41 TCATTGAGGTAATAAAAAACCAAGAATTCCTCCTGCTTCCA TCATTGAGGTAATAAAAAACCAAAAATTCCTCCTGCTTCCA < 41bp 0.707053699019887 0.484612088628529 0.87817717 0.53849614 prediction 0.414107398039774 Functional Loss - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86877238 chrX:86877241 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_92413 0 0 0 0 1 KLHL4 chrX:86877211 3'AG 86877211 Downstream 31bp
chr20 34572654 34572654 1 + G A CESC 34572651 + 34572631 34572671 41 AGGACTTCTTTGCTAATAAGCTGGACCAGGAAGTTCAGAAG AGGACTTCTTTGCTAATAAGCTGAACCAGGAAGTTCAGAAG < 41bp 0.804163379866932 0.597114916277833 0.35474563 0.2690168 prediction 0.414096927178197 Functional Loss - CNBD2 ENSG00000149646 CDS Human protein_coding chr20:34572651 chr20:34572654 nonsynonymous SNV 0.849 1 24 hm5C_associated_SNPs_92421 0 0 0 0 1 CNBD2 chr20:34572700 5'GT 34572700 Upstream 47bp
chr19 36357143 36357143 1 + C T STAD 36357140 + 36357120 36357160 41 CCCCTGGAGGAGGTCTCTTCCTGCCACCACCCTCCCCCCTT CCCCTGGAGGAGGTCTCTTCCTGTCACCACCCTCCCCCCTT < 41bp 0.713655093609826 0.506611326224475 0.11600742 0.06903091 prediction 0.414087534770703 Functional Loss - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36357140 chr19:36357143 nonsynonymous SNV 0.960 0 24 hm5C_associated_SNPs_92423 0 0 0 0 2 KIRREL2 chr19:36357059 3'AG 36357059 Downstream 85bp
chr19 36357143 36357143 1 + C T STAD 36357140 + 36357120 36357160 41 CCCCTGGAGGAGGTCTCTTCCTGCCACCACCCTCCCCCCTT CCCCTGGAGGAGGTCTCTTCCTGTCACCACCCTCCCCCCTT < 41bp 0.713655093609826 0.506611326224475 0.11600742 0.06903091 prediction 0.414087534770703 Functional Loss - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36357140 chr19:36357143 nonsynonymous SNV 0.960 0 24 hm5C_associated_SNPs_92423 0 0 0 0 2 KIRREL2 chr19:36357097 3'AG 36357097 Downstream 47bp
chr7 76131649 76131649 1 + C T COAD 76131646 + 76131626 76131666 41 CTGCATGGAGAAGCTGTCCACAGCGTCTGGATACAGCGATG CTGCATGGAGAAGCTGTCCACAGTGTCTGGATACAGCGATG < 41bp 0.707043534765491 0.495531695966538 0.050843984 0.038193792 prediction 0.414087069530982 Functional Loss - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76131646 chr7:76131649 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_92424 0 0 0 0 1 DTX2 chr7:76131615 3'AG 76131615 Downstream 35bp
chr14 23354217 23354217 1 + G T COAD 23354213 + 23354193 23354233 41 GGGAGACAGTGCTCACGAACCGGAGAACCCAGGTATTTGGG GGGAGACAGTGCTCACGAACCGGATAACCCAGGTATTTGGG < 41bp 0.707039605977294 0.497092028327564 0.92348766 0.44031247 prediction 0.414079211954588 Functional Loss - REM2 ENSG00000139890 CDS Human protein_coding chr14:23354213 chr14:23354217 nonsynonymous SNV 0.671 3 25 hm5C_associated_SNPs_92428 0 0 0 0 1 REM2 chr14:23354224 5'GT 23354224 Upstream 8bp
chr9 127074867 127074867 1 + G T SARC 127074865 + 127074845 127074885 41 AAGATAGGCCGAGGACAGTTCAGCGAGGTGTACAAGGCCAC AAGATAGGCCGAGGACAGTTCATCGAGGTGTACAAGGCCAC < 41bp 0.707035862438478 0.352475560553143 0.38153684 0.18477184 prediction 0.414071724876956 Functional Loss - NEK6 ENSG00000119408 CDS Human protein_coding chr9:127074865 chr9:127074867 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_92429 0 0 1 0 2 NEK6 chr9:127074788 3'AG 127074788 Downstream 80bp
chr9 127074867 127074867 1 + G T SARC 127074865 + 127074845 127074885 41 AAGATAGGCCGAGGACAGTTCAGCGAGGTGTACAAGGCCAC AAGATAGGCCGAGGACAGTTCATCGAGGTGTACAAGGCCAC < 41bp 0.707035862438478 0.352475560553143 0.38153684 0.18477184 prediction 0.414071724876956 Functional Loss - NEK6 ENSG00000119408 CDS Human protein_coding chr9:127074865 chr9:127074867 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_92429 0 0 1 0 2 NEK6 chr9:127074928 5'GT 127074928 Upstream 62bp
chr6 35278322 35278322 1 + C T UCEC 35278319 + 35278299 35278339 41 AAGAACTATCGGGCAGATAGCAACGGGAACAGTATGCTCTC AAGAACTATCGGGCAGATAGCAATGGGAACAGTATGCTCTC < 41bp 0.70702940956709 0.498574245939513 0.9376318 0.87636733 prediction 0.41405881913418 Functional Loss - DEF6 ENSG00000023892 CDS Human protein_coding chr6:35278319 chr6:35278322 synonymous SNV . 0 24 hm5C_associated_SNPs_92431 0 0 0 0 2 DEF6 chr6:35278236 3'AG 35278236 Downstream 87bp
chr6 35278322 35278322 1 + C T UCEC 35278319 + 35278299 35278339 41 AAGAACTATCGGGCAGATAGCAACGGGAACAGTATGCTCTC AAGAACTATCGGGCAGATAGCAATGGGAACAGTATGCTCTC < 41bp 0.70702940956709 0.498574245939513 0.9376318 0.87636733 prediction 0.41405881913418 Functional Loss - DEF6 ENSG00000023892 CDS Human protein_coding chr6:35278319 chr6:35278322 synonymous SNV . 0 24 hm5C_associated_SNPs_92431 0 0 0 0 2 DEF6 chr6:35278421 5'GT 35278421 Upstream 100bp
chr16 20838394 20838394 1 + C T CESC 20838392 + 20838372 20838412 41 AATGAAAGCTTTTCGGGAATCACGAAGAAGATTCTTAACCC AATGAAAGCTTTTCGGGAATCATGAAGAAGATTCTTAACCC < 41bp 0.874376342798323 0.667350016951942 0.32031542 0.27102304 prediction 0.414052651692762 Functional Loss - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20838392 chr16:20838394 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_92436 0 0 0 0 1 REXO5 chr16:20838380 3'AG 20838380 Downstream 15bp
chr19 1219344 1219344 1 + C T COAD 1219341 + 1219321 1219361 41 ACGTATATGGTGATGGAGTACTGCGTGTGTGGCATGCAGGA ACGTATATGGTGATGGAGTACTGTGTGTGTGGCATGCAGGA < 41bp 0.719964335412015 0.512942506172819 0.42722273 0.39637274 prediction 0.414043658478391 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1219341 chr19:1219344 synonymous SNV . 0 24 hm5C_associated_SNPs_92438 3 0 1 0 1 STK11 chr19:1219412 5'GT 1219412 Upstream 69bp
chr13 20608481 20608481 1 + G A BLCA 20608478 + 20608458 20608498 41 TTACATATTGCGAATACTGTCAAGAGGAGAAGACTCTTCAT TTACATATTGCGAATACTGTCAAAAGGAGAAGACTCTTCAT < 41bp 0.713456180789556 0.506435549607061 0.7248918 0.26582482 prediction 0.41404126236499 Functional Loss - ZMYM2 ENSG00000121741 CDS Human protein_coding chr13:20608478 chr13:20608481 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_92440 0 0 1 0 1 ZMYM2 chr13:20608394 3'AG 20608394 Downstream 88bp
chr19 49637125 49637125 1 + G A UCEC 49637122 + 49637102 49637142 41 CCCAGCTGGAAGAGAAGAATCAAGAGCTGCAGCGGGTGAGG CCCAGCTGGAAGAGAAGAATCAAAAGCTGCAGCGGGTGAGG < 41bp 0.822212991196145 0.615192686411222 0.7851844 0.5089536 prediction 0.414040609569846 Functional Loss - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49637122 chr19:49637125 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_92441 0 0 1 0 2 PPFIA3 chr19:49637053 3'AG 49637053 Downstream 73bp
chr19 49637125 49637125 1 + G A UCEC 49637122 + 49637102 49637142 41 CCCAGCTGGAAGAGAAGAATCAAGAGCTGCAGCGGGTGAGG CCCAGCTGGAAGAGAAGAATCAAAAGCTGCAGCGGGTGAGG < 41bp 0.822212991196145 0.615192686411222 0.7851844 0.5089536 prediction 0.414040609569846 Functional Loss - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49637122 chr19:49637125 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_92441 0 0 1 0 2 PPFIA3 chr19:49637136 5'GT 49637136 Upstream 12bp
chr20 44352665 44352665 1 + G A SKCM 44352662 + 44352642 44352682 41 ACTTCAAGCTTAAAATAGAACGTGAAGTAGCCTGTGTTGCA ACTTCAAGCTTAAAATAGAACGTAAAGTAGCCTGTGTTGCA < 41bp 0.707016767314775 0.482085651999201 0.1510404 0.13222826 prediction 0.41403353462955 Functional Loss - SPINT4 ENSG00000149651 CDS Human protein_coding chr20:44352662 chr20:44352665 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_92444 0 0 0 0 1 SPINT4 chr20:44352696 5'GT 44352696 Upstream 32bp
chr2 113832812 113832812 1 + C T SKCM 113832809 + 113832789 113832829 41 CAGAGCAGCTCAGGCTCCGCCTTCAGGCTTGAGGCTGCTGC CAGAGCAGCTCAGGCTCCGCCTTTAGGCTTGAGGCTGCTGC < 41bp 0.707010564542201 0.483859958563845 0.16239548 0.08379644 prediction 0.414021129084403 Functional Loss - IL1F10 ENSG00000136697 CDS Human protein_coding chr2:113832809 chr2:113832812 synonymous SNV . 0 24 hm5C_associated_SNPs_92448 0 0 0 0 1 IL1F10 chr2:113832729 3'AG 113832729 Downstream 84bp
chr1 182829247 182829247 1 + G T UCEC 182829245 + 182829225 182829265 41 CTGGATGTGGGAAAACCACACAGGTTCCCCAGTTCATTCTA CTGGATGTGGGAAAACCACACATGTTCCCCAGTTCATTCTA < 41bp 0.707010477771759 0.361106556929335 0.3718868 0.10099414 prediction 0.414020955543517 Functional Loss - DHX9 ENSG00000135829 CDS Human protein_coding chr1:182829245 chr1:182829247 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_92449 0 0 1 0 1 DHX9 chr1:182829319 5'GT 182829319 Upstream 73bp
chr9 133911631 133911631 1 + C T BLCA 133911628 + 133911608 133911648 41 GCCTGCCGGTGCCAGCACAACACCACCGGCACAGACTGTGA GCCTGCCGGTGCCAGCACAACACTACCGGCACAGACTGTGA < 41bp 0.707010463259352 0.491359925920472 0.2467595 0.21976396 prediction 0.414020926518703 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133911628 chr9:133911631 synonymous SNV . 0 24 hm5C_associated_SNPs_92450 0 0 1 0 2 LAMC3 chr9:133911553 3'AG 133911553 Downstream 79bp
chr9 133911631 133911631 1 + C T BLCA 133911628 + 133911608 133911648 41 GCCTGCCGGTGCCAGCACAACACCACCGGCACAGACTGTGA GCCTGCCGGTGCCAGCACAACACTACCGGCACAGACTGTGA < 41bp 0.707010463259352 0.491359925920472 0.2467595 0.21976396 prediction 0.414020926518703 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133911628 chr9:133911631 synonymous SNV . 0 24 hm5C_associated_SNPs_92450 0 0 1 0 2 LAMC3 chr9:133911719 5'GT 133911719 Upstream 89bp
chr8 85774546 85774546 1 + C T GBM 85774544 + 85774524 85774564 41 TGTAAAGGTTATTTGATTACCACGGGCGTGTGCCTCCACCT TGTAAAGGTTATTTGATTACCATGGGCGTGTGCCTCCACCT < 41bp 0.810066822426974 0.603058096669609 0.9327019 0.9302515 prediction 0.41401745151473 Functional Loss - RALYL ENSG00000184672 CDS Human protein_coding chr8:85774544 chr8:85774546 synonymous SNV . 0 23 hm5C_associated_SNPs_92452 0 0 0 0 1 RALYL chr8:85774531 3'AG 85774531 Downstream 16bp
chr5 1239587 1239587 1 + G T LUSC 1239584 + 1239564 1239604 41 GATGCACATTCTCCAGAACCCCCGGGTGTGGCTGGACGCAG GATGCACATTCTCCAGAACCCCCTGGTGTGGCTGGACGCAG < 41bp 0.707008433957235 0.305437231110958 0.28363758 0.01707068 prediction 0.414016867914469 Functional Loss - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1239584 chr5:1239587 nonsynonymous SNV 0.081 0 24 hm5C_associated_SNPs_92454 0 0 0 0 2 SLC6A18 chr5:1239565 3'AG 1239565 Downstream 23bp
chr5 1239587 1239587 1 + G T LUSC 1239584 + 1239564 1239604 41 GATGCACATTCTCCAGAACCCCCGGGTGTGGCTGGACGCAG GATGCACATTCTCCAGAACCCCCTGGTGTGGCTGGACGCAG < 41bp 0.707008433957235 0.305437231110958 0.28363758 0.01707068 prediction 0.414016867914469 Functional Loss - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1239584 chr5:1239587 nonsynonymous SNV 0.081 0 24 hm5C_associated_SNPs_92454 0 0 0 0 2 SLC6A18 chr5:1239677 5'GT 1239677 Upstream 91bp
chr5 146703621 146703621 1 + C T UCEC 146703618 + 146703598 146703638 41 CCCTGGACTACCTGCAGAACCAGCGCATCATTCACAGGTCA CCCTGGACTACCTGCAGAACCAGTGCATCATTCACAGGTCA < 41bp 0.733073607048503 0.526066804065002 0.34844357 0.22815213 prediction 0.414013605967001 Functional Loss - STK32A ENSG00000169302 CDS Human protein_coding chr5:146703618 chr5:146703621 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_92455 0 0 0 0 1 STK32A chr5:146703634 5'GT 146703634 Upstream 14bp
chrX 86869518 86869518 1 + G A SKCM 86869515 + 86869495 86869535 41 GAAGCCAAACAAGAAGAGGTCAGGATGGAAGGAGTAGATCC GAAGCCAAACAAGAAGAGGTCAGAATGGAAGGAGTAGATCC < 41bp 0.779083921152162 0.57208188875929 0.32401365 0.12959608 prediction 0.414004064785744 Functional Loss - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86869515 chrX:86869518 synonymous SNV . 0 24 hm5C_associated_SNPs_92459 0 0 0 0 2 KLHL4 chrX:86869437 3'AG 86869437 Downstream 82bp
chrX 86869518 86869518 1 + G A SKCM 86869515 + 86869495 86869535 41 GAAGCCAAACAAGAAGAGGTCAGGATGGAAGGAGTAGATCC GAAGCCAAACAAGAAGAGGTCAGAATGGAAGGAGTAGATCC < 41bp 0.779083921152162 0.57208188875929 0.32401365 0.12959608 prediction 0.414004064785744 Functional Loss - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86869515 chrX:86869518 synonymous SNV . 0 24 hm5C_associated_SNPs_92459 0 0 0 0 2 KLHL4 chrX:86869573 5'GT 86869573 Upstream 56bp
chr1 1115461 1115461 1 + C T rs116383664 1115458 + 1115438 1115478 41 GGAGCAGCCAGGAGGAGGGACTCCGGTGTCAGCCAAGCCAG GGAGCAGCCAGGAGGAGGGACTCTGGTGTCAGCCAAGCCAG < 41bp 0.730434762532372 0.523439160544349 0.6949798 0.4650878 prediction 0.413991203976046 Functional Loss - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1115458 chr1:1115461 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_92461 0 0 0 0 1 TTLL10 chr1:1115414 3'AG 1115414 Downstream 48bp
chr3 15045485 15045485 1 + C T UCEC 15045482 + 15045462 15045502 41 ACTCTGCTGTAGCCTCACCTCAGCGCATTCAGGTACCTGCA ACTCTGCTGTAGCCTCACCTCAGTGCATTCAGGTACCTGCA < 41bp 0.706994315671765 0.497072388131797 0.64150995 0.3860955 prediction 0.41398863134353 Functional Loss - NR2C2 ENSG00000177463 CDS Human protein_coding chr3:15045482 chr3:15045485 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_92463 0 0 1 0 1 NR2C2 chr3:15045493 5'GT 15045493 Upstream 9bp
chr1 156845394 156845394 1 + C T PRAD 156845391 + 156845371 156845411 41 GGTGGCAGCTCCCTGTCCCCCACCGAGGGCAAAGGCTCTGG GGTGGCAGCTCCCTGTCCCCCACTGAGGGCAAAGGCTCTGG < 41bp 0.758275346815938 0.551281962352138 0.10352349 0.11528796 prediction 0.4139867689276 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845391 chr1:156845394 synonymous SNV . 0 24 hm5C_associated_SNPs_92464 0 0 1 0 2 NTRK1 chr1:156845312 3'AG 156845312 Downstream 83bp
chr1 156845394 156845394 1 + C T PRAD 156845391 + 156845371 156845411 41 GGTGGCAGCTCCCTGTCCCCCACCGAGGGCAAAGGCTCTGG GGTGGCAGCTCCCTGTCCCCCACTGAGGGCAAAGGCTCTGG < 41bp 0.758275346815938 0.551281962352138 0.10352349 0.11528796 prediction 0.4139867689276 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845391 chr1:156845394 synonymous SNV . 0 24 hm5C_associated_SNPs_92464 0 0 1 0 2 NTRK1 chr1:156845458 5'GT 156845458 Upstream 65bp
chr1 65895679 65895679 1 + G A UCEC 65895676 + 65895656 65895696 41 ACTGGCATATTTCTTCACTACTGGAATTGTTGTTTCTGCCT ACTGGCATATTTCTTCACTACTGAAATTGTTGTTTCTGCCT < 41bp 0.706991506281153 0.470601249286765 0.22371742 0.097628206 prediction 0.413983012562306 Functional Loss - LEPROT ENSG00000213625 CDS Human protein_coding chr1:65895676 chr1:65895679 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_92465 0 0 1 0 1 LEPROT chr1:65895731 5'GT 65895731 Upstream 53bp
chrX 152106682 152106682 1 + G A SKCM 152106679 + 152106659 152106699 41 AGAGCAACAGCACAGCAGCCCAGGAGGATGCAAAGGCAGAC AGAGCAACAGCACAGCAGCCCAGAAGGATGCAAAGGCAGAC < 41bp 0.814709545067646 0.607721785965759 0.8109408 0.36266202 prediction 0.413975518203773 Functional Loss - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152106679 chrX:152106682 nonsynonymous SNV 0.047 2 24 hm5C_associated_SNPs_92471 0 0 0 0 2 ZNF185 chrX:152106618 3'AG 152106618 Downstream 65bp
chrX 152106682 152106682 1 + G A SKCM 152106679 + 152106659 152106699 41 AGAGCAACAGCACAGCAGCCCAGGAGGATGCAAAGGCAGAC AGAGCAACAGCACAGCAGCCCAGAAGGATGCAAAGGCAGAC < 41bp 0.814709545067646 0.607721785965759 0.8109408 0.36266202 prediction 0.413975518203773 Functional Loss - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152106679 chrX:152106682 nonsynonymous SNV 0.047 2 24 hm5C_associated_SNPs_92471 0 0 0 0 2 ZNF185 chrX:152106707 5'GT 152106707 Upstream 26bp
chr5 148624466 148624466 1 + G A COAD 148624463 + 148624443 148624483 41 GGTGATTTGTCTACAGCAACCAAGAGCAAAACAAGTGAAGA GGTGATTTGTCTACAGCAACCAAAAGCAAAACAAGTGAAGA < 41bp 0.706984158476591 0.47375226567138 0.8815515 0.8991771 prediction 0.413968316953183 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148624463 chr5:148624466 synonymous SNV . 0 24 hm5C_associated_SNPs_92474 0 0 0 0 1 ABLIM3 chr5:148624444 3'AG 148624444 Downstream 23bp
chr5 175551291 175551291 1 + G A rs569633579 175551288 + 175551268 175551308 41 CACCATGGGCCCGGCACTGCCACGTTTTCCAAGGAACCTGC CACCATGGGCCCGGCACTGCCACATTTTCCAAGGAACCTGC < 41bp 0.765633466990422 0.558649512273546 0.22722158 0.117791116 prediction 0.413967909433752 Functional Loss - LOC100507387 ENSG00000251458 ncRNA_exonic Human lincRNA chr5:175551288 chr5:175551291 . . 0 24 hm5C_associated_SNPs_92475 0 0 0 0 1 LOC100507387 chr5:175551266 3'AG 175551266 Downstream 26bp
chr19 41928571 41928571 1 + C T STAD 41928569 + 41928549 41928589 41 GGTATGGCATCATGTCAATCCGCGTGGATGGTAATGATGTG GGTATGGCATCATGTCAATCCGTGTGGATGGTAATGATGTG < 41bp 0.706983008637507 0.423715509342579 0.53081244 0.36846504 prediction 0.413966017275013 Functional Loss - BCKDHA ENSG00000248098;ENSG00000255730 CDS Human other chr19:41928569 chr19:41928571 synonymous SNV . 0 23 hm5C_associated_SNPs_92476 0 0 1 0 2 BCKDHA chr19:41928534 3'AG 41928534 Downstream 38bp
chr19 41928571 41928571 1 + C T STAD 41928569 + 41928549 41928589 41 GGTATGGCATCATGTCAATCCGCGTGGATGGTAATGATGTG GGTATGGCATCATGTCAATCCGTGTGGATGGTAATGATGTG < 41bp 0.706983008637507 0.423715509342579 0.53081244 0.36846504 prediction 0.413966017275013 Functional Loss - BCKDHA ENSG00000248098;ENSG00000255730 CDS Human other chr19:41928569 chr19:41928571 synonymous SNV . 0 23 hm5C_associated_SNPs_92476 0 0 1 0 2 BCKDHA chr19:41928537 3'AG 41928537 Downstream 35bp
chr16 66424444 66424444 1 + C T SKCM 66424442 + 66424422 66424462 41 GGCGACTACCAGGACGCTTTCACCATTGAGACAAACCCCGC GGCGACTACCAGGACGCTTTCATCATTGAGACAAACCCCGC < 41bp 0.881822250244266 0.674839259610135 0.2101422 0.15021858 prediction 0.413965981268263 Functional Loss - CDH5 ENSG00000179776 CDS Human protein_coding chr16:66424442 chr16:66424444 nonsynonymous SNV 0.899 1 23 hm5C_associated_SNPs_92477 0 0 0 0 1 CDH5 chr16:66424493 5'GT 66424493 Upstream 50bp
chr2 1251206 1251206 1 + C T COAD 1251203 + 1251183 1251223 41 GGCCCGTCCTTCTACGTTTTCAGCACTCCTCCGGTAAGGAT GGCCCGTCCTTCTACGTTTTCAGTACTCCTCCGGTAAGGAT < 41bp 0.713040675065001 0.506058264157703 0.12845951 0.15257376 prediction 0.413964821814594 Functional Loss - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1251203 chr2:1251206 synonymous SNV . 0 24 hm5C_associated_SNPs_92478 0 0 0 0 1 SNTG2 chr2:1251215 5'GT 1251215 Upstream 10bp
chr3 50677902 50677902 1 + C T HNSC 50677899 + 50677879 50677919 41 TGGATGTGTATGAGAACATGCACCATGGCAAGCGCTGTCTC TGGATGTGTATGAGAACATGCACTATGGCAAGCGCTGTCTC < 41bp 0.774942189734733 0.567960558880862 0.046997517 0.08781898 prediction 0.413963261707741 Functional Loss - MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50677899 chr3:50677902 nonsynonymous SNV 0.933 0 24 hm5C_associated_SNPs_92480 0 0 1 0 1 MAPKAPK3 chr3:50677936 5'GT 50677936 Upstream 35bp
chr6 30313140 30313140 1 + T C UCEC 30313139 + 30313119 30313159 41 GGCGAGGTTTTACTGCTACACTGAGAGGACCATTGCGAAGC GGCGAGGTTTTACTGCTACACCGAGAGGACCATTGCGAAGC < 41bp 0.792426465968518 0.585448094759755 0.3881423 0.3887547 prediction 0.413956742417526 Functional Loss - RPP21;TRIM39-RPP21 ENSG00000241370;ENSG00000248167 CDS Human other chr6:30313139 chr6:30313140 synonymous SNV . 0 22 hm5C_associated_SNPs_92483 0 0 1 0 2 RPP21;TRIM39-RPP21 chr6:30313075 3'AG 30313075 Downstream 66bp
chr6 30313140 30313140 1 + T C UCEC 30313139 + 30313119 30313159 41 GGCGAGGTTTTACTGCTACACTGAGAGGACCATTGCGAAGC GGCGAGGTTTTACTGCTACACCGAGAGGACCATTGCGAAGC < 41bp 0.792426465968518 0.585448094759755 0.3881423 0.3887547 prediction 0.413956742417526 Functional Loss - RPP21;TRIM39-RPP21 ENSG00000241370;ENSG00000248167 CDS Human other chr6:30313139 chr6:30313140 synonymous SNV . 0 22 hm5C_associated_SNPs_92483 0 0 1 0 2 RPP21;TRIM39-RPP21 chr6:30313175 5'GT 30313175 Upstream 36bp
chrX 48386681 48386681 1 + G A UCEC 48386678 + 48386658 48386698 41 AGCACCGCGACGGATTCCAGCACGGAGAGCTGGGCCACCCT AGCACCGCGACGGATTCCAGCACAGAGAGCTGGGCCACCCT < 41bp 0.811308785820437 0.604330443690202 0.22704875 0.16870117 prediction 0.413956684260471 Functional Loss - EBP ENSG00000147155 CDS Human protein_coding chrX:48386678 chrX:48386681 nonsynonymous SNV 0.771 4 24 hm5C_associated_SNPs_92484 0 0 1 0 1 EBP chrX:48386622 3'AG 48386622 Downstream 60bp
chrX 105883816 105883816 1 + G T LUAD 105883813 + 105883793 105883833 41 ACCCTCGACCTCTCAAGCAGCTAGAGTAGAAATTCAAGAAA ACCCTCGACCTCTCAAGCAGCTATAGTAGAAATTCAAGAAA < 41bp 0.706971855470192 0.322500319697048 0.18860653 0.19558066 prediction 0.413943710940385 Functional Loss - CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105883813 chrX:105883816 nonsynonymous SNV 0.878 0 24 hm5C_associated_SNPs_92487 0 0 1 0 1 CXorf57 chrX:105883782 3'AG 105883782 Downstream 35bp
chr7 2645554 2645554 1 + G A UCEC 2645551 + 2645531 2645571 41 CCGAGCCCCATCGCCCAGGCCACGGGCAGCCCTGTGCAGGA CCGAGCCCCATCGCCCAGGCCACAGGCAGCCCTGTGCAGGA < 41bp 0.706969736807943 0.452564783962002 0.23604706 0.17234716 prediction 0.413939473615885 Functional Loss - IQCE ENSG00000106012 CDS Human protein_coding chr7:2645551 chr7:2645554 synonymous SNV . 0 24 hm5C_associated_SNPs_92488 0 0 0 0 2 IQCE chr7:2645510 3'AG 2645510 Downstream 45bp
chr7 2645554 2645554 1 + G A UCEC 2645551 + 2645531 2645571 41 CCGAGCCCCATCGCCCAGGCCACGGGCAGCCCTGTGCAGGA CCGAGCCCCATCGCCCAGGCCACAGGCAGCCCTGTGCAGGA < 41bp 0.706969736807943 0.452564783962002 0.23604706 0.17234716 prediction 0.413939473615885 Functional Loss - IQCE ENSG00000106012 CDS Human protein_coding chr7:2645551 chr7:2645554 synonymous SNV . 0 24 hm5C_associated_SNPs_92488 0 0 0 0 2 IQCE chr7:2645631 5'GT 2645631 Upstream 78bp
chr1 87045718 87045718 1 + C T LIHC 87045715 + 87045695 87045735 41 AGTAAATACTACTGATCTGTCACCAAAGGAGGCCAACTCCA AGTAAATACTACTGATCTGTCACTAAAGGAGGCCAACTCCA < 41bp 0.741021277160982 0.534055557541052 0.14145046 0.052594244 prediction 0.413931439239859 Functional Loss - CLCA4 ENSG00000016602 CDS Human protein_coding chr1:87045715 chr1:87045718 nonsynonymous SNV 0.607 4 24 hm5C_associated_SNPs_92492 0 0 0 0 1 CLCA4 chr1:87045625 3'AG 87045625 Downstream 94bp
chr22 18070064 18070064 1 + T C UCEC 18070063 + 18070043 18070083 41 GGGGCCTGGGTGCCACTCTCCTCAGGTGAGCCTTTCTTCCG GGGGCCTGGGTGCCACTCTCCCCAGGTGAGCCTTTCTTCCG < 41bp 0.821090828400595 0.614127649922128 0.06802672 0.38345367 prediction 0.413926356956933 Functional Loss - SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18070063 chr22:18070064 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_92495 0 0 0 0 1 SLC25A18 chr22:18070067 5'GT 18070067 Upstream 4bp
chr7 106768735 106768735 1 + G A SKCM 106768732 + 106768712 106768752 41 ACATCCTGCTGTTTAAGAATCTGGATCCGGTAAGATAAATC ACATCCTGCTGTTTAAGAATCTGAATCCGGTAAGATAAATC < 41bp 0.706963099941596 0.478003893586789 0.07604241 0.035946757 prediction 0.413926199883192 Functional Loss - PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106768732 chr7:106768735 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_92496 0 0 0 0 2 PRKAR2B chr7:106768657 3'AG 106768657 Downstream 79bp
chr7 106768735 106768735 1 + G A SKCM 106768732 + 106768712 106768752 41 ACATCCTGCTGTTTAAGAATCTGGATCCGGTAAGATAAATC ACATCCTGCTGTTTAAGAATCTGAATCCGGTAAGATAAATC < 41bp 0.706963099941596 0.478003893586789 0.07604241 0.035946757 prediction 0.413926199883192 Functional Loss - PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106768732 chr7:106768735 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_92496 0 0 0 0 2 PRKAR2B chr7:106768740 5'GT 106768740 Upstream 6bp
chr20 33511229 33511229 1 + G T UCEC 33511226 + 33511206 33511246 41 GTTTCCTGGATACTATGTTACAGGAGATGGTGAGCCTTAGC GTTTCCTGGATACTATGTTACAGTAGATGGTGAGCCTTAGC < 41bp 0.706960589455758 0.393352967271443 0.7765962 0.2803406 prediction 0.413921178911516 Functional Loss - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33511226 chr20:33511229 stopgain 0.997 4 24 hm5C_associated_SNPs_92497 0 0 1 0 1 ACSS2 chr20:33511234 5'GT 33511234 Upstream 6bp
chr3 113652386 113652386 1 + G A GBM 113652383 + 113652363 113652403 41 GTATAAAGAAAGTCGGGAAGCACGATTTTATTTGGTAGATT GTATAAAGAAAGTCGGGAAGCACAATTTTATTTGGTAGATT < 41bp 0.762113949863333 0.555154124865327 0.36784288 0.40172273 prediction 0.413919649996011 Functional Loss - GRAMD1C ENSG00000178075 CDS Human protein_coding chr3:113652383 chr3:113652386 nonsynonymous SNV 0.955 0 24 hm5C_associated_SNPs_92498 0 0 0 0 1 GRAMD1C chr3:113652358 3'AG 113652358 Downstream 29bp
chr1 82450361 82450361 1 + C T GBM 82450359 + 82450339 82450379 41 AGTTCAGTGAAGGCATCAACCACCAGAACCAGTGCTCGCTA AGTTCAGTGAAGGCATCAACCATCAGAACCAGTGCTCGCTA < 41bp 0.86286128822064 0.655904304963444 0.32926816 0.24312696 prediction 0.413913966514393 Functional Loss - ADGRL2 ENSG00000117114 CDS Human protein_coding chr1:82450359 chr1:82450361 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_92500 0 0 0 0 2 ADGRL2 chr1:82450267 3'AG 82450267 Downstream 95bp
chr1 82450361 82450361 1 + C T GBM 82450359 + 82450339 82450379 41 AGTTCAGTGAAGGCATCAACCACCAGAACCAGTGCTCGCTA AGTTCAGTGAAGGCATCAACCATCAGAACCAGTGCTCGCTA < 41bp 0.86286128822064 0.655904304963444 0.32926816 0.24312696 prediction 0.413913966514393 Functional Loss - ADGRL2 ENSG00000117114 CDS Human protein_coding chr1:82450359 chr1:82450361 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_92500 0 0 0 0 2 ADGRL2 chr1:82450395 5'GT 82450395 Upstream 35bp
chr11 71821156 71821156 1 - G A LUSC 71821159 - 71821139 71821179 41 GATGAATGACTACAATGAGTCACCGGATGATGGAGAGGTCA GATGAATGACTACAATGAGTCACTGGATGATGGAGAGGTCA < 41bp 0.706949864886293 0.482757917863129 0.05229783 0.01362285 prediction 0.413899729772586 Functional Loss - ANAPC15 ENSG00000110200 CDS Human protein_coding chr11:71821159 chr11:71821156 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_92504 1 0 1 0 1 ANAPC15 chr11:71821134 5'GT 71821134 Upstream 23bp
chr19 36128214 36128214 1 + G A BLCA 36128211 + 36128191 36128231 41 GGCTACGGCTTCGTCAGCTTCAAGGACCCCAGCGACTACGT GGCTACGGCTTCGTCAGCTTCAAAGACCCCAGCGACTACGT < 41bp 0.814273882276454 0.607327682687938 0.71305525 0.20810232 prediction 0.413892399177032 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36128211 chr19:36128214 synonymous SNV . 0 24 hm5C_associated_SNPs_92507 0 0 1 0 1 RBM42 chr19:36128254 5'GT 36128254 Upstream 41bp
chr10 135270831 135270831 1 + C T rs576389126 135270829 + 135270809 135270849 41 GTGAAGGGCCGCAGTCCCTGCGCGGGACTCCCCGAGATCAG GTGAAGGGCCGCAGTCCCTGCGTGGGACTCCCCGAGATCAG < 41bp 0.816795298268106 0.609851144205842 0.5827163 0.4853974 prediction 0.413888308124529 Functional Loss - SCART1 ENSG00000214279 ncRNA_exonic Human protein_coding chr10:135270829 chr10:135270831 . . 0 23 hm5C_associated_SNPs_92509 0 0 1 0 1 SCART1 chr10:135270783 3'AG 135270783 Downstream 49bp
chr17 61571747 61571747 1 + G T SARC 61571743 + 61571723 61571763 41 CACTCGACAGGCTGAAGTACCAGGGCCTCTGCCCCCCAGTG CACTCGACAGGCTGAAGTACCAGGTCCTCTGCCCCCCAGTG < 41bp 0.706942330274981 0.493621474712847 0.934151 0.8560205 prediction 0.413884660549963 Functional Loss - ACE ENSG00000159640;ENSG00000264813 CDS Human other chr17:61571743 chr17:61571747 nonsynonymous SNV 0.974 4 25 hm5C_associated_SNPs_92512 0 0 1 0 2 ACE chr17:61571733 3'AG 61571733 Downstream 15bp
chr17 61571747 61571747 1 + G T SARC 61571743 + 61571723 61571763 41 CACTCGACAGGCTGAAGTACCAGGGCCTCTGCCCCCCAGTG CACTCGACAGGCTGAAGTACCAGGTCCTCTGCCCCCCAGTG < 41bp 0.706942330274981 0.493621474712847 0.934151 0.8560205 prediction 0.413884660549963 Functional Loss - ACE ENSG00000159640;ENSG00000264813 CDS Human other chr17:61571743 chr17:61571747 nonsynonymous SNV 0.974 4 25 hm5C_associated_SNPs_92512 0 0 1 0 2 ACE chr17:61571831 5'GT 61571831 Upstream 85bp
chr4 109543346 109543346 1 + G T UCEC 109543344 + 109543324 109543364 41 ATCTGCATGTGGTGTGTGCCCAGGCAGACTTCGAGGGGTAA ATCTGCATGTGGTGTGTGCCCATGCAGACTTCGAGGGGTAA < 41bp 0.706941784244213 0.358512739284435 0.8710798 0.19522312 prediction 0.413883568488425 Functional Loss - RPL34 ENSG00000109475 CDS Human protein_coding chr4:109543344 chr4:109543346 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_92514 0 0 1 0 2 RPL34 chr4:109543261 3'AG 109543261 Downstream 86bp
chr4 109543346 109543346 1 + G T UCEC 109543344 + 109543324 109543364 41 ATCTGCATGTGGTGTGTGCCCAGGCAGACTTCGAGGGGTAA ATCTGCATGTGGTGTGTGCCCATGCAGACTTCGAGGGGTAA < 41bp 0.706941784244213 0.358512739284435 0.8710798 0.19522312 prediction 0.413883568488425 Functional Loss - RPL34 ENSG00000109475 CDS Human protein_coding chr4:109543344 chr4:109543346 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_92514 0 0 1 0 2 RPL34 chr4:109543360 5'GT 109543360 Upstream 15bp
chr12 53670438 53670438 1 + G A UCEC 53670435 + 53670415 53670455 41 ACAGCCTCAGTGGCTGGGACCCGGAGACCCTGGCCCTCCTG ACAGCCTCAGTGGCTGGGACCCGAAGACCCTGGCCCTCCTG < 41bp 0.706941574653888 0.453135150821517 0.9247553 0.4312439 prediction 0.413883149307776 Functional Loss - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53670435 chr12:53670438 nonsynonymous SNV 0.793 1 24 hm5C_associated_SNPs_92515 0 0 1 0 1 ESPL1 chr12:53670404 3'AG 53670404 Downstream 35bp
chr10 3150938 3150938 1 + G A PRAD 3150935 + 3150915 3150955 41 ATGACACACGTGTGACCATCCTCGGGCACGTGCAGAGAGGA ATGACACACGTGTGACCATCCTCAGGCACGTGCAGAGAGGA < 41bp 0.706940196057152 0.463432313056536 0.14115486 0.10504913 prediction 0.413880392114303 Functional Loss - PFKP ENSG00000067057 CDS Human protein_coding chr10:3150935 chr10:3150938 nonsynonymous SNV 0.841 5 24 hm5C_associated_SNPs_92518 0 0 1 0 2 PFKP chr10:3150893 3'AG 3150893 Downstream 46bp
chr10 3150938 3150938 1 + G A PRAD 3150935 + 3150915 3150955 41 ATGACACACGTGTGACCATCCTCGGGCACGTGCAGAGAGGA ATGACACACGTGTGACCATCCTCAGGCACGTGCAGAGAGGA < 41bp 0.706940196057152 0.463432313056536 0.14115486 0.10504913 prediction 0.413880392114303 Functional Loss - PFKP ENSG00000067057 CDS Human protein_coding chr10:3150935 chr10:3150938 nonsynonymous SNV 0.841 5 24 hm5C_associated_SNPs_92518 0 0 1 0 2 PFKP chr10:3150985 5'GT 3150985 Upstream 48bp
chr2 105122720 105122720 1 + T C rs552589463 105122719 + 105122699 105122739 41 TCTAAGCCAGGTCTGACAGACTCCAAAGCAAGCCCTGTTTA TCTAAGCCAGGTCTGACAGACCCCAAAGCAAGCCCTGTTTA < 41bp 0.777569375207525 0.570629450476176 0.9545267 0.043664664 prediction 0.413879849462698 Functional Loss - LINC01102 ENSG00000235597 ncRNA_exonic Human lincRNA chr2:105122719 chr2:105122720 . . 0 22 hm5C_associated_SNPs_92519 0 0 0 6 1 LINC01102 chr2:105122761 5'GT 105122761 Upstream 42bp
chr12 75816731 75816731 1 + G A BRCA 75816728 + 75816708 75816748 41 TGAACCAGGAATATTTTGTACTCGATGTGGCAGACGTGACA TGAACCAGGAATATTTTGTACTCAATGTGGCAGACGTGACA < 41bp 0.773828603977024 0.566890085664057 0.29750305 0.054576635 prediction 0.413877036625933 Functional Loss - GLIPR1L2 ENSG00000180481 CDS Human protein_coding chr12:75816728 chr12:75816731 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_92520 0 0 0 0 2 GLIPR1L2 chr12:75816684 3'AG 75816684 Downstream 48bp
chr12 75816731 75816731 1 + G A BRCA 75816728 + 75816708 75816748 41 TGAACCAGGAATATTTTGTACTCGATGTGGCAGACGTGACA TGAACCAGGAATATTTTGTACTCAATGTGGCAGACGTGACA < 41bp 0.773828603977024 0.566890085664057 0.29750305 0.054576635 prediction 0.413877036625933 Functional Loss - GLIPR1L2 ENSG00000180481 CDS Human protein_coding chr12:75816728 chr12:75816731 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_92520 0 0 0 0 2 GLIPR1L2 chr12:75816769 5'GT 75816769 Upstream 39bp
chr8 22020095 22020095 1 + C T STAD 22020092 + 22020072 22020112 41 GCCCCACCGTGTCAGGACTACTCCGCAGCTCCCCGGGGCCG GCCCCACCGTGTCAGGACTACTCTGCAGCTCCCCGGGGCCG < 41bp 0.745559823477867 0.538622518672688 0.3113587 0.18223932 prediction 0.413874609610359 Functional Loss - SFTPC ENSG00000168484 CDS Human protein_coding chr8:22020092 chr8:22020095 synonymous SNV . 0 24 hm5C_associated_SNPs_92522 0 0 0 0 1 SFTPC chr8:22020087 3'AG 22020087 Downstream 9bp
chr3 193336693 193336693 1 - C T SKCM 193336696 - 193336676 193336716 41 ATGCTTGTCACTTTCAGATCCACGATCTGTTGCTCTAAACG ATGCTTGTCACTTTCAGATCCACAATCTGTTGCTCTAAACG < 41bp 0.759227616807726 0.552297921763259 0.02776748 0.016646028 prediction 0.413859390088934 Functional Loss - OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336696 chr3:193336693 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_92526 0 0 0 0 1 OPA1 chr3:193336699 3'AG 193336699 Downstream 7bp
chr3 113003703 113003703 1 + G A UCEC 113003700 + 113003680 113003720 41 GACCCCCAAAGTCACCAGATCACGAGGTAACCAGGCCTCTC GACCCCCAAAGTCACCAGATCACAAGGTAACCAGGCCTCTC < 41bp 0.812410139352821 0.605483248669821 0.42444816 0.21307403 prediction 0.413853781366001 Functional Loss - BOC ENSG00000144857 CDS Human protein_coding chr3:113003700 chr3:113003703 synonymous SNV . 0 24 hm5C_associated_SNPs_92529 0 0 0 0 2 BOC chr3:113003629 3'AG 113003629 Downstream 75bp
chr3 113003703 113003703 1 + G A UCEC 113003700 + 113003680 113003720 41 GACCCCCAAAGTCACCAGATCACGAGGTAACCAGGCCTCTC GACCCCCAAAGTCACCAGATCACAAGGTAACCAGGCCTCTC < 41bp 0.812410139352821 0.605483248669821 0.42444816 0.21307403 prediction 0.413853781366001 Functional Loss - BOC ENSG00000144857 CDS Human protein_coding chr3:113003700 chr3:113003703 synonymous SNV . 0 24 hm5C_associated_SNPs_92529 0 0 0 0 2 BOC chr3:113003705 5'GT 113003705 Upstream 3bp
chr17 52992080 52992080 1 + G A rs61739718 52992077 + 52992057 52992097 41 TCTGTAATTGCTCCAAAGAACTCGACTGTTACATTGGTCCC TCTGTAATTGCTCCAAAGAACTCAACTGTTACATTGGTCCC < 41bp 0.788457221741092 0.581530432024182 0.1460582 0.16583335 prediction 0.413853579433821 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52992077 chr17:52992080 synonymous SNV . 0 24 hm5C_associated_SNPs_92530 0 0 1 3 2 TOM1L1 chr17:52992000 3'AG 52992000 Downstream 81bp
chr17 52992080 52992080 1 + G A rs61739718 52992077 + 52992057 52992097 41 TCTGTAATTGCTCCAAAGAACTCGACTGTTACATTGGTCCC TCTGTAATTGCTCCAAAGAACTCAACTGTTACATTGGTCCC < 41bp 0.788457221741092 0.581530432024182 0.1460582 0.16583335 prediction 0.413853579433821 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52992077 chr17:52992080 synonymous SNV . 0 24 hm5C_associated_SNPs_92530 0 0 1 3 2 TOM1L1 chr17:52992104 5'GT 52992104 Upstream 25bp
chr2 79254997 79254997 1 + G A LUAD 79254994 + 79254974 79255014 41 TGATGTGATGAATTACTTTGCATGGGAGAAAAATCCCTCCA TGATGTGATGAATTACTTTGCATAGGAGAAAAATCCCTCCA < 41bp 0.706925658599642 0.460866224653061 0.488823 0.2525651 prediction 0.413851317199283 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79254994 chr2:79254997 stopgain 0.163 1 24 hm5C_associated_SNPs_92532 0 0 0 0 2 REG3G chr2:79254933 3'AG 79254933 Downstream 65bp
chr2 79254997 79254997 1 + G A LUAD 79254994 + 79254974 79255014 41 TGATGTGATGAATTACTTTGCATGGGAGAAAAATCCCTCCA TGATGTGATGAATTACTTTGCATAGGAGAAAAATCCCTCCA < 41bp 0.706925658599642 0.460866224653061 0.488823 0.2525651 prediction 0.413851317199283 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79254994 chr2:79254997 stopgain 0.163 1 24 hm5C_associated_SNPs_92532 0 0 0 0 2 REG3G chr2:79255059 5'GT 79255059 Upstream 63bp
chr1 9658529 9658529 1 + A T LUAD 9658527 + 9658507 9658547 41 GGCAGGTATGACGAGGAGGTCGAGGTGTACCGGCATCACCT GGCAGGTATGACGAGGAGGTCGTGGTGTACCGGCATCACCT < 41bp 0.709733441698761 0.502809126195121 0.9121156 0.8929424 prediction 0.413848631007279 Functional Loss - TMEM201 ENSG00000188807 CDS Human protein_coding chr1:9658527 chr1:9658529 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_92534 0 0 1 0 1 TMEM201 chr1:9658507 3'AG 9658507 Downstream 23bp
chr1 150484986 150484986 1 + C T UCEC 150484983 + 150484963 150485003 41 CGGGACATCTTGACCATTGACATCGGTCGAGTCACCCCCAA CGGGACATCTTGACCATTGACATTGGTCGAGTCACCCCCAA < 41bp 0.740117578500674 0.533194845330812 0.4702038 0.28066152 prediction 0.413845466339724 Functional Loss - ECM1 ENSG00000143369 CDS Human protein_coding chr1:150484983 chr1:150484986 synonymous SNV . 0 24 hm5C_associated_SNPs_92535 0 0 1 0 1 ECM1 chr1:150485048 5'GT 150485048 Upstream 63bp
chr10 129871610 129871610 1 + C T UCEC 129871607 + 129871587 129871627 41 GCCTCCATTTGAAGGGCTACCGACAGAAGGACTATTTCATC GCCTCCATTTGAAGGGCTACCGATAGAAGGACTATTTCATC < 41bp 0.706920709004468 0.485217438283587 0.24339887 0.28724757 prediction 0.413841418008936 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129871607 chr10:129871610 stopgain 0.981 1 24 hm5C_associated_SNPs_92537 0 0 0 0 1 PTPRE chr10:129871601 3'AG 129871601 Downstream 10bp
chr5 72922098 72922098 1 + G A rs139527887 72922095 + 72922075 72922115 41 CGAGGCGCCCTCAGGCAGGGCGCGGGGGCAGAGCCTCGCCT CGAGGCGCCCTCAGGCAGGGCGCAGGGGCAGAGCCTCGCCT < 41bp 0.769510823513137 0.562592337594848 0.8772638 0.7075329 prediction 0.413836971836578 Functional Loss - ARHGEF28 ENSG00000214944 UTR5 Human protein_coding chr5:72922095 chr5:72922098 . . 0 24 hm5C_associated_SNPs_92540 0 0 1 0 1 ARHGEF28 chr5:72922147 5'GT 72922147 Upstream 50bp
chr20 46279947 46279947 1 + C T BLCA 46279944 + 46279924 46279964 41 CCTAATGTGACTGCTTCCCCCAGCATGGATGGGCTTTTGGC CCTAATGTGACTGCTTCCCCCAGTATGGATGGGCTTTTGGC < 41bp 0.706918265827527 0.476960965110658 0.21823186 0.09281656 prediction 0.413836531655053 Functional Loss - NCOA3 ENSG00000124151 CDS Human protein_coding chr20:46279944 chr20:46279947 synonymous SNV . 0 24 hm5C_associated_SNPs_92541 0 0 1 0 1 NCOA3 chr20:46280020 5'GT 46280020 Upstream 74bp
chr4 178256872 178256872 1 + G A CHOL 178256869 + 178256849 178256889 41 TTCGGAATGAAAGGCTTCATCATGATTAATCCACTTGAGTA TTCGGAATGAAAGGCTTCATCATAATTAATCCACTTGAGTA < 41bp 0.706916750172099 0.48422913248653 0.17309767 0.15810198 prediction 0.413833500344197 Functional Loss - NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178256869 chr4:178256872 nonsynonymous SNV 0.986 0 24 hm5C_associated_SNPs_92542 0 0 1 0 1 NEIL3 chr4:178256842 3'AG 178256842 Downstream 31bp
chr11 66833381 66833381 1 + G A rs147100013 66833378 + 66833358 66833398 41 TCTCCTCAGAGCTACACCCCCACGGTGTTTGAGCGGTACAT TCTCCTCAGAGCTACACCCCCACAGTGTTTGAGCGGTACAT < 41bp 0.706911719979684 0.459149601366187 0.3094854 0.17880243 prediction 0.413823439959369 Functional Loss - RHOD ENSG00000173156 CDS Human protein_coding chr11:66833378 chr11:66833381 synonymous SNV . 0 24 hm5C_associated_SNPs_92545 0 0 0 0 2 RHOD chr11:66833367 3'AG 66833367 Downstream 15bp
chr11 66833381 66833381 1 + G A rs147100013 66833378 + 66833358 66833398 41 TCTCCTCAGAGCTACACCCCCACGGTGTTTGAGCGGTACAT TCTCCTCAGAGCTACACCCCCACAGTGTTTGAGCGGTACAT < 41bp 0.706911719979684 0.459149601366187 0.3094854 0.17880243 prediction 0.413823439959369 Functional Loss - RHOD ENSG00000173156 CDS Human protein_coding chr11:66833378 chr11:66833381 synonymous SNV . 0 24 hm5C_associated_SNPs_92545 0 0 0 0 2 RHOD chr11:66833454 5'GT 66833454 Upstream 74bp
chr2 28796075 28796075 1 + G A UCEC 28796072 + 28796052 28796092 41 TTGTATTTGCAGACATCCTCCGGGAATTCAACCCTTCCCTG TTGTATTTGCAGACATCCTCCGGAAATTCAACCCTTCCCTG < 41bp 0.706909123609594 0.467726426384053 0.9003509 0.5300583 prediction 0.413818247219188 Functional Loss - PLB1 ENSG00000163803 CDS Human protein_coding chr2:28796072 chr2:28796075 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_92547 0 0 0 0 2 PLB1 chr2:28796064 3'AG 28796064 Downstream 12bp
chr2 28796075 28796075 1 + G A UCEC 28796072 + 28796052 28796092 41 TTGTATTTGCAGACATCCTCCGGGAATTCAACCCTTCCCTG TTGTATTTGCAGACATCCTCCGGAAATTCAACCCTTCCCTG < 41bp 0.706909123609594 0.467726426384053 0.9003509 0.5300583 prediction 0.413818247219188 Functional Loss - PLB1 ENSG00000163803 CDS Human protein_coding chr2:28796072 chr2:28796075 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_92547 0 0 0 0 2 PLB1 chr2:28796172 5'GT 28796172 Upstream 98bp
chr7 133932334 133932334 1 + C T rs2598264 133932332 + 133932312 133932352 41 GAGATTCTATACACAGACAGCACGAGGCAGCCCGGCAAGCT GAGATTCTATACACAGACAGCATGAGGCAGCCCGGCAAGCT < 41bp 0.706905744749455 0.412213913439754 0.057465106 0.11197299 prediction 0.41381148949891 Functional Loss - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133932332 chr7:133932334 synonymous SNV . 0 23 hm5C_associated_SNPs_92550 0 0 0 0 2 LRGUK chr7:133932308 3'AG 133932308 Downstream 27bp
chr7 133932334 133932334 1 + C T rs2598264 133932332 + 133932312 133932352 41 GAGATTCTATACACAGACAGCACGAGGCAGCCCGGCAAGCT GAGATTCTATACACAGACAGCATGAGGCAGCCCGGCAAGCT < 41bp 0.706905744749455 0.412213913439754 0.057465106 0.11197299 prediction 0.41381148949891 Functional Loss - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133932332 chr7:133932334 synonymous SNV . 0 23 hm5C_associated_SNPs_92550 0 0 0 0 2 LRGUK chr7:133932396 5'GT 133932396 Upstream 63bp
chr16 30035099 30035099 1 + G A STAD 30035096 + 30035076 30035116 41 AGCCCTGGGGACAGAGTCTCCGCGCTTCTTAGACAGACCTG AGCCCTGGGGACAGAGTCTCCGCACTTCTTAGACAGACCTG < 41bp 0.812435081236598 0.605532651568084 0.6869982 0.38632125 prediction 0.413804859337028 Functional Loss - C16orf92 ENSG00000167194 CDS Human protein_coding chr16:30035096 chr16:30035099 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_92552 0 0 0 0 1 C16orf92 chr16:30035048 3'AG 30035048 Downstream 52bp
chr1 28081757 28081757 1 + C T LIHC 28081754 + 28081734 28081774 41 CCAGGCACTGACCACTTTGTCATCATTGCCCAACTGAAGGA CCAGGCACTGACCACTTTGTCATTATTGCCCAACTGAAGGA < 41bp 0.770523154560613 0.56362526843775 0.20066765 0.15520903 prediction 0.413795772245726 Functional Loss - FAM76A ENSG00000009780 CDS Human protein_coding chr1:28081754 chr1:28081757 synonymous SNV . 0 24 hm5C_associated_SNPs_92554 0 0 1 0 2 FAM76A chr1:28081706 3'AG 28081706 Downstream 52bp
chr1 28081757 28081757 1 + C T LIHC 28081754 + 28081734 28081774 41 CCAGGCACTGACCACTTTGTCATCATTGCCCAACTGAAGGA CCAGGCACTGACCACTTTGTCATTATTGCCCAACTGAAGGA < 41bp 0.770523154560613 0.56362526843775 0.20066765 0.15520903 prediction 0.413795772245726 Functional Loss - FAM76A ENSG00000009780 CDS Human protein_coding chr1:28081754 chr1:28081757 synonymous SNV . 0 24 hm5C_associated_SNPs_92554 0 0 1 0 2 FAM76A chr1:28081841 5'GT 28081841 Upstream 85bp
chr20 35807712 35807712 1 - G A ESCA 35807715 - 35807695 35807735 41 TCCGAGCCGCGGGCTGACTTCCGCTCGGGAAAGTGGCTCCA TCCGAGCCGCGGGCTGACTTCCGTTCGGGAAAGTGGCTCCA < 41bp 0.707402841392651 0.500507021702137 0.32116455 0.23413345 prediction 0.413791639381029 Functional Loss - MROH8 ENSG00000101353 CDS Human protein_coding chr20:35807715 chr20:35807712 synonymous SNV . 0 24 hm5C_associated_SNPs_92556 0 0 0 0 1 MROH8 chr20:35807626 5'GT 35807626 Upstream 87bp
chr7 44153227 44153227 1 + G A UCEC 44153224 + 44153204 44153244 41 GATTACTGGCGAATCTTGAACCCGGGTGAGTACCGCGTGAC GATTACTGGCGAATCTTGAACCCAGGTGAGTACCGCGTGAC < 41bp 0.706895135454068 0.462100816647718 0.6226579 0.26070684 prediction 0.413790270908135 Functional Loss - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44153224 chr7:44153227 synonymous SNV . 0 24 hm5C_associated_SNPs_92557 0 0 0 0 1 AEBP1 chr7:44153193 3'AG 44153193 Downstream 35bp
chr7 57528471 57528471 1 + G A SKCM 57528468 + 57528448 57528488 41 CCCAAGACCTTCAGTCAGAGCAGGGCATAAAAGATTCACTC CCCAAGACCTTCAGTCAGAGCAGAGCATAAAAGATTCACTC < 41bp 0.706888724714813 0.475676417326122 0.31303972 0.1636729 prediction 0.413777449429627 Functional Loss - ZNF716 ENSG00000182111 CDS Human protein_coding chr7:57528468 chr7:57528471 nonsynonymous SNV 0.122 0 24 hm5C_associated_SNPs_92560 0 0 0 0 1 ZNF716 chr7:57528430 3'AG 57528430 Downstream 42bp
chr19 49100066 49100066 1 + C T SKCM 49100064 + 49100044 49100084 41 CTGGGCAAGGAGGCACTGGGCTCCGTCGTGGCACACTCAAC CTGGGCAAGGAGGCACTGGGCTTCGTCGTGGCACACTCAAC < 41bp 0.706886469725278 0.426253062142293 0.050262034 0.10501909 prediction 0.413772939450556 Functional Loss - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49100064 chr19:49100066 nonsynonymous SNV 0.040 4 23 hm5C_associated_SNPs_92563 0 0 1 0 1 SULT2B1 chr19:49099996 3'AG 49099996 Downstream 71bp
chr2 27722055 27722055 1 + G A SKCM 27722052 + 27722032 27722072 41 GGACAGAAGATAGTGCCTTGCACGGGATTGAGGAACTGAAG GGACAGAAGATAGTGCCTTGCACAGGATTGAGGAACTGAAG < 41bp 0.796078285604924 0.589195259356151 0.6943812 0.36270505 prediction 0.413766052497546 Functional Loss - GCKR ENSG00000084734 CDS Human protein_coding chr2:27722052 chr2:27722055 nonsynonymous SNV 0.770 1 24 hm5C_associated_SNPs_92567 0 0 1 0 2 GCKR chr2:27722009 3'AG 27722009 Downstream 47bp
chr2 27722055 27722055 1 + G A SKCM 27722052 + 27722032 27722072 41 GGACAGAAGATAGTGCCTTGCACGGGATTGAGGAACTGAAG GGACAGAAGATAGTGCCTTGCACAGGATTGAGGAACTGAAG < 41bp 0.796078285604924 0.589195259356151 0.6943812 0.36270505 prediction 0.413766052497546 Functional Loss - GCKR ENSG00000084734 CDS Human protein_coding chr2:27722052 chr2:27722055 nonsynonymous SNV 0.770 1 24 hm5C_associated_SNPs_92567 0 0 1 0 2 GCKR chr2:27722075 5'GT 27722075 Upstream 21bp
chrX 11790315 11790315 1 + G A LUAD 11790312 + 11790292 11790332 41 TGTGCCTGACAATTACCCCCCAGGTGACCAGCCGCCTCCAC TGTGCCTGACAATTACCCCCCAGATGACCAGCCGCCTCCAC < 41bp 0.706882609118975 0.465404757745399 0.9254105 0.6643381 prediction 0.41376521823795 Functional Loss - MSL3 ENSG00000005302 CDS Human protein_coding chrX:11790312 chrX:11790315 nonsynonymous SNV 0.868 0 24 hm5C_associated_SNPs_92568 0 0 0 0 2 MSL3 chrX:11790275 3'AG 11790275 Downstream 41bp
chrX 11790315 11790315 1 + G A LUAD 11790312 + 11790292 11790332 41 TGTGCCTGACAATTACCCCCCAGGTGACCAGCCGCCTCCAC TGTGCCTGACAATTACCCCCCAGATGACCAGCCGCCTCCAC < 41bp 0.706882609118975 0.465404757745399 0.9254105 0.6643381 prediction 0.41376521823795 Functional Loss - MSL3 ENSG00000005302 CDS Human protein_coding chrX:11790312 chrX:11790315 nonsynonymous SNV 0.868 0 24 hm5C_associated_SNPs_92568 0 0 0 0 2 MSL3 chrX:11790374 5'GT 11790374 Upstream 60bp
chr4 20543209 20543209 1 + G A LUAD 20543206 + 20543186 20543226 41 TCCTGAAAGAAATACCCATCCAGGATGTGGCCATTCAGGAC TCCTGAAAGAAATACCCATCCAGAATGTGGCCATTCAGGAC < 41bp 0.784259406834898 0.577384583004646 0.24034736 0.054823726 prediction 0.413749647660504 Functional Loss - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20543206 chr4:20543209 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_92572 0 0 1 0 1 SLIT2 chr4:20543242 5'GT 20543242 Upstream 34bp
chr12 133294633 133294633 1 + G T UCEC 133294629 + 133294609 133294649 41 TTCCGGAACTACATCCACCGCGCAGATGCCAGGCAGGAGGA TTCCGGAACTACATCCACCGCGCATATGCCAGGCAGGAGGA < 41bp 0.724330894025799 0.517459986503747 0.21873066 0.13735637 prediction 0.413741815044103 Functional Loss - PGAM5 ENSG00000247077 CDS Human protein_coding chr12:133294629 chr12:133294633 nonsynonymous SNV 0.103 3 25 hm5C_associated_SNPs_92574 0 0 1 0 3 PGAM5 chr12:133294573 3'AG 133294573 Downstream 61bp
chr12 133294633 133294633 1 + G T UCEC 133294629 + 133294609 133294649 41 TTCCGGAACTACATCCACCGCGCAGATGCCAGGCAGGAGGA TTCCGGAACTACATCCACCGCGCATATGCCAGGCAGGAGGA < 41bp 0.724330894025799 0.517459986503747 0.21873066 0.13735637 prediction 0.413741815044103 Functional Loss - PGAM5 ENSG00000247077 CDS Human protein_coding chr12:133294629 chr12:133294633 nonsynonymous SNV 0.103 3 25 hm5C_associated_SNPs_92574 0 0 1 0 3 PGAM5 chr12:133294576 3'AG 133294576 Downstream 58bp
chr12 133294633 133294633 1 + G T UCEC 133294629 + 133294609 133294649 41 TTCCGGAACTACATCCACCGCGCAGATGCCAGGCAGGAGGA TTCCGGAACTACATCCACCGCGCATATGCCAGGCAGGAGGA < 41bp 0.724330894025799 0.517459986503747 0.21873066 0.13735637 prediction 0.413741815044103 Functional Loss - PGAM5 ENSG00000247077 CDS Human protein_coding chr12:133294629 chr12:133294633 nonsynonymous SNV 0.103 3 25 hm5C_associated_SNPs_92574 0 0 1 0 3 PGAM5 chr12:133294706 5'GT 133294706 Upstream 74bp
chr1 3624161 3624161 1 + G A STAD 3624158 + 3624138 3624178 41 CCATGGACCAGATGAGCAGCCGCGCGGCCTCGGCCAGCCCC CCATGGACCAGATGAGCAGCCGCACGGCCTCGGCCAGCCCC < 41bp 0.76697661615123 0.560107085719335 0.3953264 0.31627834 prediction 0.413739060863789 Functional Loss - TP73 ENSG00000078900 CDS Human protein_coding chr1:3624158 chr1:3624161 nonsynonymous SNV 0.875 2 24 hm5C_associated_SNPs_92575 0 0 0 0 1 TP73 chr1:3624113 3'AG 3624113 Downstream 49bp
chr2 25355785 25355785 1 + C T COAD 25355782 + 25355762 25355802 41 CCTCCTGCAGGCTCCTTTGCCAGCACGCTGCCCACCTACCA CCTCCTGCAGGCTCCTTTGCCAGTACGCTGCCCACCTACCA < 41bp 0.725285658095082 0.518416321233872 0.82493997 0.71803236 prediction 0.413738673722421 Functional Loss - EFR3B ENSG00000084710 CDS Human protein_coding chr2:25355782 chr2:25355785 synonymous SNV . 0 24 hm5C_associated_SNPs_92576 0 0 0 0 2 EFR3B chr2:25355772 3'AG 25355772 Downstream 14bp
chr2 25355785 25355785 1 + C T COAD 25355782 + 25355762 25355802 41 CCTCCTGCAGGCTCCTTTGCCAGCACGCTGCCCACCTACCA CCTCCTGCAGGCTCCTTTGCCAGTACGCTGCCCACCTACCA < 41bp 0.725285658095082 0.518416321233872 0.82493997 0.71803236 prediction 0.413738673722421 Functional Loss - EFR3B ENSG00000084710 CDS Human protein_coding chr2:25355782 chr2:25355785 synonymous SNV . 0 24 hm5C_associated_SNPs_92576 0 0 0 0 2 EFR3B chr2:25355883 5'GT 25355883 Upstream 99bp
chr8 145731980 145731980 1 + G A SKCM 145731977 + 145731957 145731997 41 GCATCAGCTGCAACCCAGTGCAGGGCGCCATGTACTCCTTC GCATCAGCTGCAACCCAGTGCAGAGCGCCATGTACTCCTTC < 41bp 0.822549017277834 0.61568483753149 0.86969537 0.676696 prediction 0.413728359492689 Functional Loss - GPT ENSG00000167701 CDS Human protein_coding chr8:145731977 chr8:145731980 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_92577 0 0 0 0 2 GPT chr8:145731884 3'AG 145731884 Downstream 97bp
chr8 145731980 145731980 1 + G A SKCM 145731977 + 145731957 145731997 41 GCATCAGCTGCAACCCAGTGCAGGGCGCCATGTACTCCTTC GCATCAGCTGCAACCCAGTGCAGAGCGCCATGTACTCCTTC < 41bp 0.822549017277834 0.61568483753149 0.86969537 0.676696 prediction 0.413728359492689 Functional Loss - GPT ENSG00000167701 CDS Human protein_coding chr8:145731977 chr8:145731980 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_92577 0 0 0 0 2 GPT chr8:145732039 5'GT 145732039 Upstream 60bp
chr10 134014379 134014379 1 + C T HNSC 134014376 + 134014356 134014396 41 CAGGTGACAGGCAGCGCCCACTGCACCTTCACCACTGCCCA CAGGTGACAGGCAGCGCCCACTGTACCTTCACCACTGCCCA < 41bp 0.706863455766963 0.483718672120455 0.2348305 0.24294227 prediction 0.413726911533927 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134014376 chr10:134014379 synonymous SNV . 0 24 hm5C_associated_SNPs_92578 0 0 0 0 1 DPYSL4 chr10:134014346 3'AG 134014346 Downstream 34bp
chr19 14159999 14159999 1 + C T SKCM 14159997 + 14159977 14160017 41 TGGGGCCAACGCTTTGGCGACTCCAAGATGCCCCTCCAGGG TGGGGCCAACGCTTTGGCGACTTCAAGATGCCCCTCCAGGG < 41bp 0.706861047835829 0.409402726378856 0.9582124 0.059279203 prediction 0.413722095671658 Functional Loss - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14159997 chr19:14159999 synonymous SNV . 0 23 hm5C_associated_SNPs_92580 0 0 0 0 1 IL27RA chr19:14159968 3'AG 14159968 Downstream 32bp
chr1 16374530 16374530 1 + C T BLCA 16374528 + 16374508 16374548 41 CCTGTGGCAGCACCCTCTTCCTCGGGAAAGTGGTATGGGCA CCTGTGGCAGCACCCTCTTCCTTGGGAAAGTGGTATGGGCA < 41bp 0.706856839701796 0.436761302479998 0.14344382 0.11165002 prediction 0.413713679403591 Functional Loss - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16374528 chr1:16374530 synonymous SNV . 0 23 hm5C_associated_SNPs_92583 0 0 0 0 1 CLCNKB chr1:16374539 5'GT 16374539 Upstream 10bp
chr1 16374531 16374531 1 + G A OV 16374528 + 16374508 16374548 41 CCTGTGGCAGCACCCTCTTCCTCGGGAAAGTGGTATGGGCA CCTGTGGCAGCACCCTCTTCCTCAGGAAAGTGGTATGGGCA < 41bp 0.706856839701796 0.458052295049709 0.14344382 0.08194074 prediction 0.413713679403591 Functional Loss - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16374528 chr1:16374531 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_92584 0 0 0 0 1 CLCNKB chr1:16374539 5'GT 16374539 Upstream 9bp
chr9 96435963 96435963 1 + G T SARC 96435959 + 96435939 96435979 41 CGACTCCTGCCTGCAGACCACGTGGGGAGCTGGCCAGGCCA CGACTCCTGCCTGCAGACCACGTGTGGAGCTGGCCAGGCCA < 41bp 0.711860497701331 0.505004702730669 0.85131913 0.5276647 prediction 0.413711589941324 Functional Loss - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96435959 chr9:96435963 nonsynonymous SNV 0.724 4 25 hm5C_associated_SNPs_92586 0 0 1 0 1 PHF2 chr9:96435867 3'AG 96435867 Downstream 97bp
chr4 88996109 88996109 1 + G C KIRP 88996108 + 88996088 88996128 41 AGGCTGTTGGATGGGGTGGCCGAGGTCAGTAGTCATGAGCT AGGCTGTTGGATGGGGTGGCCCAGGTCAGTAGTCATGAGCT < 41bp 0.706850878712526 0.390307799721393 0.88858986 0.762306 prediction 0.413701757425051 Functional Loss - PKD2 ENSG00000118762 CDS Human protein_coding chr4:88996108 chr4:88996109 nonsynonymous SNV 0.300 4 22 hm5C_associated_SNPs_92589 0 0 0 0 1 PKD2 chr4:88996111 5'GT 88996111 Upstream 3bp
chr4 88996111 88996111 1 + G T UCEC 88996108 + 88996088 88996128 41 AGGCTGTTGGATGGGGTGGCCGAGGTCAGTAGTCATGAGCT AGGCTGTTGGATGGGGTGGCCGATGTCAGTAGTCATGAGCT < 41bp 0.706850878712526 0.306207522578636 0.88858986 0.47703418 prediction 0.413701757425051 Functional Loss - PKD2 ENSG00000118762 CDS Human protein_coding chr4:88996108 chr4:88996111 nonsynonymous SNV 0.303 4 24 hm5C_associated_SNPs_92590 0 0 0 0 1 PKD2 chr4:88996111 5'GT 88996111 Upstream 1bp
chr19 12865511 12865511 1 + C T UCEC 12865508 + 12865488 12865528 41 TACCGGCGCACACTCATGCGCTACGCAGGGCTCTCGGCCGT TACCGGCGCACACTCATGCGCTATGCAGGGCTCTCGGCCGT < 41bp 0.707152867592341 0.500303533196818 0.05928701 0.061163753 prediction 0.413698668791046 Functional Loss - BEST2 ENSG00000039987 CDS Human protein_coding chr19:12865508 chr19:12865511 synonymous SNV . 0 24 hm5C_associated_SNPs_92591 0 0 0 0 1 BEST2 chr19:12865599 5'GT 12865599 Upstream 89bp
chrX 12735174 12735174 1 + G A SKCM 12735171 + 12735151 12735191 41 AAGGCAAGTGTGAGAAGGGACTGGATAATGCCGTCGTCTCC AAGGCAAGTGTGAGAAGGGACTGAATAATGCCGTCGTCTCC < 41bp 0.706848667940071 0.490603156759209 0.75179905 0.43631986 prediction 0.413697335880142 Functional Loss - FRMPD4 ENSG00000169933 CDS Human protein_coding chrX:12735171 chrX:12735174 nonsynonymous SNV 0.869 0 24 hm5C_associated_SNPs_92592 0 0 0 0 1 FRMPD4 chrX:12735252 5'GT 12735252 Upstream 79bp
chr17 61601570 61601570 1 + C T ESCA 61601567 + 61601547 61601587 41 ATTTACTGCAACGACGGCTTCTGCGAACTCTTCGGCTACTC ATTTACTGCAACGACGGCTTCTGTGAACTCTTCGGCTACTC < 41bp 0.70684827769998 0.483722997818631 0.10633841 0.13315305 prediction 0.41369655539996 Functional Loss - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61601567 chr17:61601570 synonymous SNV . 0 24 hm5C_associated_SNPs_92593 0 0 0 0 2 KCNH6 chr17:61601500 3'AG 61601500 Downstream 71bp
chr17 61601570 61601570 1 + C T ESCA 61601567 + 61601547 61601587 41 ATTTACTGCAACGACGGCTTCTGCGAACTCTTCGGCTACTC ATTTACTGCAACGACGGCTTCTGTGAACTCTTCGGCTACTC < 41bp 0.70684827769998 0.483722997818631 0.10633841 0.13315305 prediction 0.41369655539996 Functional Loss - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61601567 chr17:61601570 synonymous SNV . 0 24 hm5C_associated_SNPs_92593 0 0 0 0 2 KCNH6 chr17:61601597 5'GT 61601597 Upstream 28bp
chr3 50252997 50252997 1 + T C KIRP 50252996 + 50252976 50253016 41 GCATCCGTGCCTATGAGCAGCTGGGCTACCGTGCCTTTGGG GCATCCGTGCCTATGAGCAGCCGGGCTACCGTGCCTTTGGG < 41bp 0.738921838372837 0.532076140153254 0.8349946 0.8605457 prediction 0.413691396439167 Functional Loss - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50252996 chr3:50252997 . 0.999 2 22 hm5C_associated_SNPs_92595 0 0 1 0 2 SLC38A3 chr3:50252976 3'AG 50252976 Downstream 22bp
chr3 50252997 50252997 1 + T C KIRP 50252996 + 50252976 50253016 41 GCATCCGTGCCTATGAGCAGCTGGGCTACCGTGCCTTTGGG GCATCCGTGCCTATGAGCAGCCGGGCTACCGTGCCTTTGGG < 41bp 0.738921838372837 0.532076140153254 0.8349946 0.8605457 prediction 0.413691396439167 Functional Loss - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50252996 chr3:50252997 . 0.999 2 22 hm5C_associated_SNPs_92595 0 0 1 0 2 SLC38A3 chr3:50253068 5'GT 50253068 Upstream 72bp
chrX 2778025 2778025 1 + G A SKCM 2778022 + 2778002 2778042 41 CAGGCGGCATTCCTTCATCTCTGGTGGACGGTCTACCAGAA CAGGCGGCATTCCTTCATCTCTGATGGACGGTCTACCAGAA < 41bp 0.706844981271653 0.445994878275394 0.40925124 0.21860978 prediction 0.413689962543305 Functional Loss - GYG2 ENSG00000056998 CDS Human protein_coding chrX:2778022 chrX:2778025 stopgain 0.288 1 24 hm5C_associated_SNPs_92596 0 0 0 0 1 GYG2 chrX:2778106 5'GT 2778106 Upstream 82bp
chr1 117957412 117957412 1 + G T UCEC 117957409 + 117957389 117957429 41 TGGGACTTCATGATGAATTCCTAGATGGGCAAAGATGGATT TGGGACTTCATGATGAATTCCTATATGGGCAAAGATGGATT < 41bp 0.706841362486217 0.333680125820217 0.28324795 0.93846726 prediction 0.413682724972435 Functional Loss - MAN1A2 ENSG00000198162 CDS Human protein_coding chr1:117957409 chr1:117957412 nonsynonymous SNV 0.871 2 24 hm5C_associated_SNPs_92598 0 0 1 0 2 MAN1A2 chr1:117957335 3'AG 117957335 Downstream 78bp
chr1 117957412 117957412 1 + G T UCEC 117957409 + 117957389 117957429 41 TGGGACTTCATGATGAATTCCTAGATGGGCAAAGATGGATT TGGGACTTCATGATGAATTCCTATATGGGCAAAGATGGATT < 41bp 0.706841362486217 0.333680125820217 0.28324795 0.93846726 prediction 0.413682724972435 Functional Loss - MAN1A2 ENSG00000198162 CDS Human protein_coding chr1:117957409 chr1:117957412 nonsynonymous SNV 0.871 2 24 hm5C_associated_SNPs_92598 0 0 1 0 2 MAN1A2 chr1:117957453 5'GT 117957453 Upstream 42bp
chrX 47270086 47270086 1 + C T rs150123180 47270083 + 47270063 47270103 41 CATTTCCCATTAACAGGCCTCTGCGTGGCCAAACCAGAGAT CATTTCCCATTAACAGGCCTCTGTGTGGCCAAACCAGAGAT < 41bp 0.706840073267496 0.490841956911993 0.06150633 0.03888312 prediction 0.413680146534993 Functional Loss - ZNF157 ENSG00000147117 CDS Human protein_coding chrX:47270083 chrX:47270086 synonymous SNV . 0 24 hm5C_associated_SNPs_92599 0 0 0 0 2 ZNF157 chrX:47270079 3'AG 47270079 Downstream 8bp
chrX 47270086 47270086 1 + C T rs150123180 47270083 + 47270063 47270103 41 CATTTCCCATTAACAGGCCTCTGCGTGGCCAAACCAGAGAT CATTTCCCATTAACAGGCCTCTGTGTGGCCAAACCAGAGAT < 41bp 0.706840073267496 0.490841956911993 0.06150633 0.03888312 prediction 0.413680146534993 Functional Loss - ZNF157 ENSG00000147117 CDS Human protein_coding chrX:47270083 chrX:47270086 synonymous SNV . 0 24 hm5C_associated_SNPs_92599 0 0 0 0 2 ZNF157 chrX:47270174 5'GT 47270174 Upstream 89bp
chr14 24528595 24528595 1 + G A BLCA 24528592 + 24528572 24528612 41 GTGGATCTGAGCGGCAATGGCATGGAGGACATCGGGGCCAA GTGGATCTGAGCGGCAATGGCATAGAGGACATCGGGGCCAA < 41bp 0.706838386863813 0.460821103963981 0.632269 0.19079462 prediction 0.413676773727627 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24528592 chr14:24528595 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_92601 0 0 1 0 1 CARMIL3 chr14:24528651 5'GT 24528651 Upstream 57bp
chr7 75028289 75028289 1 + G A SKCM 75028286 + 75028266 75028306 41 CCCATCTGCCTGGAGGTCTTCAAGGAGTCCCTAATGCTACA CCCATCTGCCTGGAGGTCTTCAAAGAGTCCCTAATGCTACA < 41bp 0.818508458158149 0.611674016543188 0.3306836 0.17741147 prediction 0.413668883229922 Functional Loss - TRIM73 ENSG00000178809 CDS Human protein_coding chr7:75028286 chr7:75028289 synonymous SNV . 0 24 hm5C_associated_SNPs_92603 0 0 1 0 1 TRIM73 chr7:75028200 3'AG 75028200 Downstream 90bp
chr1 203022921 203022921 1 + C T COAD 203022918 + 203022898 203022938 41 ACTGCCTGGGATGCTGGCCCCGGCAGCTGGCCCTGCCTTTG ACTGCCTGGGATGCTGGCCCCGGTAGCTGGCCCTGCCTTTG < 41bp 0.707675767807509 0.500842476025516 0.8044555 0.41370815 prediction 0.413666583563986 Functional Loss - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203022918 chr1:203022921 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_92604 0 0 1 0 2 PPFIA4 chr1:203022881 3'AG 203022881 Downstream 41bp
chr1 203022921 203022921 1 + C T COAD 203022918 + 203022898 203022938 41 ACTGCCTGGGATGCTGGCCCCGGCAGCTGGCCCTGCCTTTG ACTGCCTGGGATGCTGGCCCCGGTAGCTGGCCCTGCCTTTG < 41bp 0.707675767807509 0.500842476025516 0.8044555 0.41370815 prediction 0.413666583563986 Functional Loss - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203022918 chr1:203022921 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_92604 0 0 1 0 2 PPFIA4 chr1:203022988 5'GT 203022988 Upstream 68bp
chr19 10528343 10528343 1 + G A SKCM 10528340 + 10528320 10528360 41 CTTTGTCCCTCCCCAGAGGTCGAGGGAGACCCCCGAATCCG CTTTGTCCCTCCCCAGAGGTCGAAGGAGACCCCCGAATCCG < 41bp 0.827256099214468 0.620424209850067 0.9348457 0.8993376 prediction 0.413663778728802 Functional Loss - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10528340 chr19:10528343 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_92606 0 0 0 0 1 PDE4A chr19:10528336 3'AG 10528336 Downstream 8bp
chr7 116862946 116862946 1 + G T UCEC 116862944 + 116862924 116862964 41 ATTTTCTGCTCGGCAGAGTTCAGGGACTGGAATTGCAAGAG ATTTTCTGCTCGGCAGAGTTCATGGACTGGAATTGCAAGAG < 41bp 0.706831416324285 0.382520950799163 0.9140593 0.3776949 prediction 0.413662832648571 Functional Loss - ST7 ENSG00000004866 CDS Human protein_coding chr7:116862944 chr7:116862946 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_92608 0 0 0 0 1 ST7 chr7:116862915 3'AG 116862915 Downstream 32bp
chr19 5667165 5667165 1 + C T SKCM 5667163 + 5667143 5667183 41 GAGCGAGGGCCGGGGGCTGCCTCCTCCCCCCAGGTTTGTGT GAGCGAGGGCCGGGGGCTGCCTTCTCCCCCCAGGTTTGTGT < 41bp 0.706830651550895 0.417368740313989 0.65697044 0.16877821 prediction 0.41366130310179 Functional Loss - SAFB ENSG00000160633 CDS Human protein_coding chr19:5667163 chr19:5667165 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_92609 0 0 1 0 1 SAFB chr19:5667175 5'GT 5667175 Upstream 11bp
chr16 89643997 89643997 1 + G A rs35701751 89643994 + 89643974 89644014 41 AGCCTGCATCCCGTGTTCTCCAAGGTCTTCACGGTGGACTA AGCCTGCATCCCGTGTTCTCCAAAGTCTTCACGGTGGACTA < 41bp 0.816613923210485 0.609784249123733 0.8880675 0.29199982 prediction 0.413659348173503 Functional Loss - CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89643994 chr16:89643997 synonymous SNV . 0 24 hm5C_associated_SNPs_92610 0 0 0 0 1 CPNE7 chr16:89643947 3'AG 89643947 Downstream 51bp
chr16 129486 129486 1 + G A STAD 129483 + 129463 129503 41 AGAGCAGGGCAGCCACACAGCTCGTCCGACGCAGCCCAGGC AGAGCAGGGCAGCCACACAGCTCATCCGACGCAGCCCAGGC < 41bp 0.823435672373849 0.616606565895997 0.23714048 0.16330627 prediction 0.413658212955703 Functional Loss - MPG ENSG00000103152 CDS Human protein_coding chr16:129483 chr16:129486 synonymous SNV . 0 24 hm5C_associated_SNPs_92612 0 0 1 0 1 MPG chr16:129424 3'AG 129424 Downstream 63bp
chr12 58109590 58109590 1 + C T STAD 58109588 + 58109568 58109608 41 TCTCTGGGGACTACATCGATCGCGTGGACGAGCCCTTGTCC TCTCTGGGGACTACATCGATCGTGTGGACGAGCCCTTGTCC < 41bp 0.851590321068124 0.644762086641101 0.566393 0.39484674 prediction 0.413656468854048 Functional Loss - OS9 ENSG00000135506 CDS Human protein_coding chr12:58109588 chr12:58109590 synonymous SNV . 0 23 hm5C_associated_SNPs_92615 0 0 1 0 1 OS9 chr12:58109543 3'AG 58109543 Downstream 48bp
chr15 25453130 25453130 1 + A C ESCA 25453126 + 25453106 25453146 41 GGTCCCCAGCTCCTGATGCACTGAAGCTCAGGCCCTTCCTG GGTCCCCAGCTCCTGATGCACTGACGCTCAGGCCCTTCCTG < 41bp 0.706825081119605 0.355063085638907 0.37446553 0.3391205 prediction 0.413650162239209 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25453126 chr15:25453130 . . 0 25 hm5C_associated_SNPs_92618 0 0 0 0 2 SNHG14 chr15:25453043 3'AG 25453043 Downstream 88bp
chr15 25453130 25453130 1 + A C ESCA 25453126 + 25453106 25453146 41 GGTCCCCAGCTCCTGATGCACTGAAGCTCAGGCCCTTCCTG GGTCCCCAGCTCCTGATGCACTGACGCTCAGGCCCTTCCTG < 41bp 0.706825081119605 0.355063085638907 0.37446553 0.3391205 prediction 0.413650162239209 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25453126 chr15:25453130 . . 0 25 hm5C_associated_SNPs_92618 0 0 0 0 2 SNHG14 chr15:25453174 5'GT 25453174 Upstream 45bp
chr11 18497181 18497181 1 + C T LUSC 18497179 + 18497159 18497199 41 ATCCTTGGAGAGCATGGCGACTCAAGTGGTAAGCCTGAGGC ATCCTTGGAGAGCATGGCGACTTAAGTGGTAAGCCTGAGGC < 41bp 0.706822774934344 0.412799411068904 0.44900632 0.4951068 prediction 0.413645549868688 Functional Loss - LDHAL6A ENSG00000166800 CDS Human protein_coding chr11:18497179 chr11:18497181 nonsynonymous SNV 0.918 3 23 hm5C_associated_SNPs_92620 0 0 0 0 1 LDHAL6A chr11:18497186 5'GT 18497186 Upstream 6bp
chr20 44640944 44640944 1 + C T rs527613229 44640942 + 44640922 44640962 41 GACAAGAAGTGGGGCTTCTGCCCGGACCAAGGTAGGCGTGG GACAAGAAGTGGGGCTTCTGCCTGGACCAAGGTAGGCGTGG < 41bp 0.706821087061727 0.448473617308599 0.48704335 0.35156175 prediction 0.413642174123453 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44640942 chr20:44640944 nonsynonymous SNV 0.975 3 23 hm5C_associated_SNPs_92623 0 0 0 0 1 MMP9 chr20:44640952 5'GT 44640952 Upstream 9bp
chr10 7773950 7773950 1 + G A HNSC 7773947 + 7773927 7773967 41 GATCAAATAGAGAGCGTTATCACGGCGACTTCGGTACTTCC GATCAAATAGAGAGCGTTATCACAGCGACTTCGGTACTTCC < 41bp 0.793514104106994 0.586693315844499 0.93684566 0.91170716 prediction 0.41364157652499 Functional Loss - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7773947 chr10:7773950 synonymous SNV . 0 24 hm5C_associated_SNPs_92624 0 0 1 0 1 ITIH2 chr10:7773959 5'GT 7773959 Upstream 10bp
chr3 46621508 46621508 1 + G A UCEC 46621505 + 46621485 46621525 41 GTTCCCTGTGTAAATGCTGGCACGGTCAGCTCCGCTGCTTT GTTCCCTGTGTAAATGCTGGCACAGTCAGCTCCGCTGCTTT < 41bp 0.808361911836088 0.60154198396527 0.7570429 0.57183975 prediction 0.413639855741635 Functional Loss - TDGF1 ENSG00000241186 CDS Human protein_coding chr3:46621505 chr3:46621508 nonsynonymous SNV 0.590 3 24 hm5C_associated_SNPs_92625 0 0 0 0 2 TDGF1 chr3:46621441 3'AG 46621441 Downstream 68bp
chr3 46621508 46621508 1 + G A UCEC 46621505 + 46621485 46621525 41 GTTCCCTGTGTAAATGCTGGCACGGTCAGCTCCGCTGCTTT GTTCCCTGTGTAAATGCTGGCACAGTCAGCTCCGCTGCTTT < 41bp 0.808361911836088 0.60154198396527 0.7570429 0.57183975 prediction 0.413639855741635 Functional Loss - TDGF1 ENSG00000241186 CDS Human protein_coding chr3:46621505 chr3:46621508 nonsynonymous SNV 0.590 3 24 hm5C_associated_SNPs_92625 0 0 0 0 2 TDGF1 chr3:46621550 5'GT 46621550 Upstream 43bp
chr8 22972231 22972231 1 + C T SKCM 22972228 + 22972208 22972248 41 TGCACAGAGGGTGTGGATTACACCAACGCTTCCAACAATGA TGCACAGAGGGTGTGGATTACACTAACGCTTCCAACAATGA < 41bp 0.706813830406545 0.486154597416329 0.019557685 0.0042699277 prediction 0.41362766081309 Functional Loss - TNFRSF10C ENSG00000173535 CDS Human protein_coding chr8:22972228 chr8:22972231 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_92628 0 0 0 0 2 TNFRSF10C chr8:22972170 3'AG 22972170 Downstream 62bp
chr8 22972231 22972231 1 + C T SKCM 22972228 + 22972208 22972248 41 TGCACAGAGGGTGTGGATTACACCAACGCTTCCAACAATGA TGCACAGAGGGTGTGGATTACACTAACGCTTCCAACAATGA < 41bp 0.706813830406545 0.486154597416329 0.019557685 0.0042699277 prediction 0.41362766081309 Functional Loss - TNFRSF10C ENSG00000173535 CDS Human protein_coding chr8:22972228 chr8:22972231 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_92628 0 0 0 0 2 TNFRSF10C chr8:22972283 5'GT 22972283 Upstream 53bp
chr20 2297883 2297883 1 + T C LGG 2297882 + 2297862 2297902 41 GCTGGGTCTTTGCTGGGACCCTCAACACAGGTACCTTGGGT GCTGGGTCTTTGCTGGGACCCCCAACACAGGTACCTTGGGT < 41bp 0.706813556174094 0.447844799370109 0.3825379 0.24834466 prediction 0.413627112348187 Functional Loss - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2297882 chr20:2297883 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_92629 0 0 0 0 1 TGM3 chr20:2297891 5'GT 2297891 Upstream 9bp
chr11 134239721 134239721 1 + A T STAD 134239717 + 134239697 134239737 41 AGACTATGATGCTGTGCTGACAGAAGCCGGCGATTACACGG AGACTATGATGCTGTGCTGACAGATGCCGGCGATTACACGG < 41bp 0.706811270934334 0.392902739916214 0.5367253 0.8460915 prediction 0.413622541868668 Functional Loss - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134239717 chr11:134239721 nonsynonymous SNV 0.906 5 25 hm5C_associated_SNPs_92632 0 0 0 0 2 GLB1L2 chr11:134239699 3'AG 134239699 Downstream 23bp
chr11 134239721 134239721 1 + A T STAD 134239717 + 134239697 134239737 41 AGACTATGATGCTGTGCTGACAGAAGCCGGCGATTACACGG AGACTATGATGCTGTGCTGACAGATGCCGGCGATTACACGG < 41bp 0.706811270934334 0.392902739916214 0.5367253 0.8460915 prediction 0.413622541868668 Functional Loss - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134239717 chr11:134239721 nonsynonymous SNV 0.906 5 25 hm5C_associated_SNPs_92632 0 0 0 0 2 GLB1L2 chr11:134239779 5'GT 134239779 Upstream 59bp
chr19 11352175 11352175 1 + C T rs192460764 11352172 + 11352152 11352192 41 GGGCCCTCACAGGCCACGTGCAGCGGCAGAGGCGGGAGATG GGGCCCTCACAGGCCACGTGCAGTGGCAGAGGCGGGAGATG < 41bp 0.71350311769555 0.506693518342192 0.75605077 0.40639186 prediction 0.413619198706716 Functional Loss - ANGPTL8 ENSG00000130173 CDS Human protein_coding chr19:11352172 chr19:11352175 nonsynonymous SNV 0.979 3 24 hm5C_associated_SNPs_92633 0 0 1 0 2 ANGPTL8 chr19:11352121 3'AG 11352121 Downstream 55bp
chr19 11352175 11352175 1 + C T rs192460764 11352172 + 11352152 11352192 41 GGGCCCTCACAGGCCACGTGCAGCGGCAGAGGCGGGAGATG GGGCCCTCACAGGCCACGTGCAGTGGCAGAGGCGGGAGATG < 41bp 0.71350311769555 0.506693518342192 0.75605077 0.40639186 prediction 0.413619198706716 Functional Loss - ANGPTL8 ENSG00000130173 CDS Human protein_coding chr19:11352172 chr19:11352175 nonsynonymous SNV 0.979 3 24 hm5C_associated_SNPs_92633 0 0 1 0 2 ANGPTL8 chr19:11352230 5'GT 11352230 Upstream 56bp
chr2 202150022 202150022 1 + T C LUSC 202150021 + 202150001 202150041 41 TCCAGTCACTTTGCCAGAGCCTGAGAGAGCGATGTCCTCGG TCCAGTCACTTTGCCAGAGCCCGAGAGAGCGATGTCCTCGG < 41bp 0.738423291999047 0.531614413921703 0.38227344 0.3542602 prediction 0.413617756154687 Functional Loss - CASP8 ENSG00000064012 CDS Human protein_coding chr2:202150021 chr2:202150022 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_92635 0 0 1 0 1 CASP8 chr2:202150040 5'GT 202150040 Upstream 19bp
chr17 8350200 8350200 1 + C T STAD 8350197 + 8350177 8350217 41 AGAGAGCTGGAGCAGGCCAACGACGACCTGGAGCGAGCCAA AGAGAGCTGGAGCAGGCCAACGATGACCTGGAGCGAGCCAA < 41bp 0.70680512087966 0.492186347964823 0.23645175 0.3446287 prediction 0.41361024175932 Functional Loss - NDEL1 ENSG00000166579 CDS Human protein_coding chr17:8350197 chr17:8350200 synonymous SNV . 0 24 hm5C_associated_SNPs_92638 0 0 1 0 1 NDEL1 chr17:8350220 5'GT 8350220 Upstream 21bp
chr11 540719 540719 1 + G A rs2277269 540716 + 540696 540736 41 CTGGGACAGATCCCGTGGGCCTCGGCGGAGCACCTCCAGCG CTGGGACAGATCCCGTGGGCCTCAGCGGAGCACCTCCAGCG < 41bp 0.70680328144913 0.454112545108848 0.7290484 0.2831298 prediction 0.413606562898259 Functional Loss - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:540716 chr11:540719 nonsynonymous SNV 0.011 1 24 hm5C_associated_SNPs_92642 0 0 0 0 1 LRRC56 chr11:540674 3'AG 540674 Downstream 46bp
chr19 50188067 50188067 1 + G A rs143994257 50188064 + 50188044 50188084 41 ACGCTGTATGTGACGGCCATCGAGGACCGGCAGTACAAAGA ACGCTGTATGTGACGGCCATCGAAGACCGGCAGTACAAAGA < 41bp 0.813122873818578 0.606322691039789 0.88732815 0.74930495 prediction 0.413600365557577 Functional Loss - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50188064 chr19:50188067 synonymous SNV . 0 24 hm5C_associated_SNPs_92644 0 0 1 0 2 PRMT1 chr19:50188011 3'AG 50188011 Downstream 57bp
chr19 50188067 50188067 1 + G A rs143994257 50188064 + 50188044 50188084 41 ACGCTGTATGTGACGGCCATCGAGGACCGGCAGTACAAAGA ACGCTGTATGTGACGGCCATCGAAGACCGGCAGTACAAAGA < 41bp 0.813122873818578 0.606322691039789 0.88732815 0.74930495 prediction 0.413600365557577 Functional Loss - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50188064 chr19:50188067 synonymous SNV . 0 24 hm5C_associated_SNPs_92644 0 0 1 0 2 PRMT1 chr19:50188098 5'GT 50188098 Upstream 32bp
chr22 44553883 44553883 1 + G T LUAD 44553880 + 44553860 44553900 41 AGTTTGCAGATGGCGTGTACCTGGTTCTGCTCATGGGCCTT AGTTTGCAGATGGCGTGTACCTGTTTCTGCTCATGGGCCTT < 41bp 0.706799900673004 0.301778868342136 0.42195624 0.11382273 prediction 0.413599801346007 Functional Loss - PARVB ENSG00000188677 CDS Human protein_coding chr22:44553880 chr22:44553883 nonsynonymous SNV 0.987 5 24 hm5C_associated_SNPs_92646 0 0 1 0 2 PARVB chr22:44553862 3'AG 44553862 Downstream 22bp
chr22 44553883 44553883 1 + G T LUAD 44553880 + 44553860 44553900 41 AGTTTGCAGATGGCGTGTACCTGGTTCTGCTCATGGGCCTT AGTTTGCAGATGGCGTGTACCTGTTTCTGCTCATGGGCCTT < 41bp 0.706799900673004 0.301778868342136 0.42195624 0.11382273 prediction 0.413599801346007 Functional Loss - PARVB ENSG00000188677 CDS Human protein_coding chr22:44553880 chr22:44553883 nonsynonymous SNV 0.987 5 24 hm5C_associated_SNPs_92646 0 0 1 0 2 PARVB chr22:44553963 5'GT 44553963 Upstream 81bp
chr19 7672738 7672738 1 + G A SKCM 7672735 + 7672715 7672755 41 TGCCTTCTGTTTGAAGGAGTCGGGGAGCAAACCCCCCATGG TGCCTTCTGTTTGAAGGAGTCGGAGAGCAAACCCCCCATGG < 41bp 0.815267374331387 0.608469551418804 0.9472797 0.86891603 prediction 0.413595645825166 Functional Loss - CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7672735 chr19:7672738 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_92648 0 0 0 0 2 CAMSAP3 chr19:7672707 3'AG 7672707 Downstream 32bp
chr19 7672738 7672738 1 + G A SKCM 7672735 + 7672715 7672755 41 TGCCTTCTGTTTGAAGGAGTCGGGGAGCAAACCCCCCATGG TGCCTTCTGTTTGAAGGAGTCGGAGAGCAAACCCCCCATGG < 41bp 0.815267374331387 0.608469551418804 0.9472797 0.86891603 prediction 0.413595645825166 Functional Loss - CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7672735 chr19:7672738 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_92648 0 0 0 0 2 CAMSAP3 chr19:7672754 5'GT 7672754 Upstream 17bp
chr19 46178075 46178075 1 + G C LUAD 46178071 + 46178051 46178091 41 CCTTGGGGACCAGGCCCTTGCGCTGTGGAACCAGGTGGGCA CCTTGGGGACCAGGCCCTTGCGCTCTGGAACCAGGTGGGCA < 41bp 0.706797620365699 0.405485765323645 0.2775707 0.15561777 prediction 0.413595240731399 Functional Loss - GIPR ENSG00000010310 CDS Human protein_coding chr19:46178071 chr19:46178075 synonymous SNV . 0 25 hm5C_associated_SNPs_92649 0 0 1 0 1 GIPR chr19:46178084 5'GT 46178084 Upstream 10bp
chr5 176867992 176867992 1 + T C UCEC 176867991 + 176867971 176868011 41 TCAGTTCCCCCAGACCTGGACTGGAAGGGCCAGCCACCTGC TCAGTTCCCCCAGACCTGGACCGGAAGGGCCAGCCACCTGC < 41bp 0.840875726806585 0.634078683683965 0.2632951 0.2289932 prediction 0.413594086245241 Functional Loss - GRK6 ENSG00000198055 CDS Human protein_coding chr5:176867991 chr5:176867992 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_92650 0 0 1 0 1 GRK6 chr5:176867920 3'AG 176867920 Downstream 73bp
chr16 24166132 24166132 1 + G A SKCM 24166129 + 24166109 24166149 41 GAAGCGGGTGTTGGCCCTGCCTGGGAAGCCGCCCTTCCTGA GAAGCGGGTGTTGGCCCTGCCTGAGAAGCCGCCCTTCCTGA < 41bp 0.821836095161004 0.615039143072399 0.61818534 0.22672305 prediction 0.413593904177209 Functional Loss - PRKCB ENSG00000166501 CDS Human protein_coding chr16:24166129 chr16:24166132 nonsynonymous SNV 0.900 1 24 hm5C_associated_SNPs_92651 0 0 1 0 1 PRKCB chr16:24166178 5'GT 24166178 Upstream 47bp
chr11 63276290 63276290 1 + C T CESC 63276287 + 63276267 63276307 41 AGTGTGGCTGCAGCCTGTGTCCCCGGCCAGATATCGCCTTC AGTGTGGCTGCAGCCTGTGTCCCTGGCCAGATATCGCCTTC < 41bp 0.749542973534309 0.54275526921805 0.14756349 0.09805176 prediction 0.413575408632519 Functional Loss - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63276287 chr11:63276290 nonsynonymous SNV 0.264 1 24 hm5C_associated_SNPs_92656 0 0 0 0 3 LGALS12 chr11:63276247 3'AG 63276247 Downstream 44bp
chr11 63276290 63276290 1 + C T CESC 63276287 + 63276267 63276307 41 AGTGTGGCTGCAGCCTGTGTCCCCGGCCAGATATCGCCTTC AGTGTGGCTGCAGCCTGTGTCCCTGGCCAGATATCGCCTTC < 41bp 0.749542973534309 0.54275526921805 0.14756349 0.09805176 prediction 0.413575408632519 Functional Loss - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63276287 chr11:63276290 nonsynonymous SNV 0.264 1 24 hm5C_associated_SNPs_92656 0 0 0 0 3 LGALS12 chr11:63276250 3'AG 63276250 Downstream 41bp
chr11 63276290 63276290 1 + C T CESC 63276287 + 63276267 63276307 41 AGTGTGGCTGCAGCCTGTGTCCCCGGCCAGATATCGCCTTC AGTGTGGCTGCAGCCTGTGTCCCTGGCCAGATATCGCCTTC < 41bp 0.749542973534309 0.54275526921805 0.14756349 0.09805176 prediction 0.413575408632519 Functional Loss - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63276287 chr11:63276290 nonsynonymous SNV 0.264 1 24 hm5C_associated_SNPs_92656 0 0 0 0 3 LGALS12 chr11:63276257 3'AG 63276257 Downstream 34bp
chr11 43511873 43511873 1 + C T LUAD 43511870 + 43511850 43511890 41 GAAAGAAGGCAATCGACTGCCTCCGCCAGGCTCTGCACTAT GAAAGAAGGCAATCGACTGCCTCTGCCAGGCTCTGCACTAT < 41bp 0.706787625243075 0.472886042597415 0.20997491 0.1579977 prediction 0.41357525048615 Functional Loss - TTC17 ENSG00000052841 CDS Human protein_coding chr11:43511870 chr11:43511873 nonsynonymous SNV 0.969 4 24 hm5C_associated_SNPs_92657 0 0 0 0 2 TTC17 chr11:43511789 3'AG 43511789 Downstream 85bp
chr11 43511873 43511873 1 + C T LUAD 43511870 + 43511850 43511890 41 GAAAGAAGGCAATCGACTGCCTCCGCCAGGCTCTGCACTAT GAAAGAAGGCAATCGACTGCCTCTGCCAGGCTCTGCACTAT < 41bp 0.706787625243075 0.472886042597415 0.20997491 0.1579977 prediction 0.41357525048615 Functional Loss - TTC17 ENSG00000052841 CDS Human protein_coding chr11:43511870 chr11:43511873 nonsynonymous SNV 0.969 4 24 hm5C_associated_SNPs_92657 0 0 0 0 2 TTC17 chr11:43511908 5'GT 43511908 Upstream 36bp
chr1 22148030 22148030 1 + G A SKCM 22148027 + 22148007 22148047 41 CTCCCCAGCTCTCGGGTCTGCAGGATCCCTCTGGATTGCAG CTCCCCAGCTCTCGGGTCTGCAGAATCCCTCTGGATTGCAG < 41bp 0.811473828823377 0.604686426355782 0.76939285 0.40296176 prediction 0.413574804935191 Functional Loss - LDLRAD2 ENSG00000187942 CDS Human protein_coding chr1:22148027 chr1:22148030 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_92658 0 0 0 1 1 LDLRAD2 chr1:22148104 5'GT 22148104 Upstream 75bp
chr16 31421815 31421815 1 + G A SKCM 31421812 + 31421792 31421832 41 CCACCTTCATCAACATGTCTCAGGAGAATGTGGACATGAGG CCACCTTCATCAACATGTCTCAGAAGAATGTGGACATGAGG < 41bp 0.706786732700424 0.451920887707755 0.88874257 0.20806643 prediction 0.413573465400848 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31421812 chr16:31421815 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_92659 0 0 0 0 2 ITGAD chr16:31421716 3'AG 31421716 Downstream 100bp
chr16 31421815 31421815 1 + G A SKCM 31421812 + 31421792 31421832 41 CCACCTTCATCAACATGTCTCAGGAGAATGTGGACATGAGG CCACCTTCATCAACATGTCTCAGAAGAATGTGGACATGAGG < 41bp 0.706786732700424 0.451920887707755 0.88874257 0.20806643 prediction 0.413573465400848 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31421812 chr16:31421815 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_92659 0 0 0 0 2 ITGAD chr16:31421845 5'GT 31421845 Upstream 31bp
chr19 15807799 15807799 1 + A T LUSC 15807797 + 15807777 15807817 41 TGCTGCACTTCCGGTTCCTGCCAGACCACACTGAGCCCCGC TGCTGCACTTCCGGTTCCTGCCTGACCACACTGAGCCCCGC < 41bp 0.71371315262558 0.506934777838995 0.20456946 0.032710373 prediction 0.413556749573171 Functional Loss - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15807797 chr19:15807799 synonymous SNV . 0 23 hm5C_associated_SNPs_92664 0 0 1 0 1 CYP4F12 chr19:15807718 3'AG 15807718 Downstream 82bp
chr1 196799796 196799796 1 + A T rs566133245 196799792 + 196799772 196799812 41 ATGTAGAAATGGACAATGGTCAGAACCACCAAAATGCTTAC ATGTAGAAATGGACAATGGTCAGATCCACCAAAATGCTTAC < 41bp 0.706776130488038 0.39794947416051 0.22510985 0.31880605 prediction 0.413552260976076 Functional Loss - CFHR1 ENSG00000244414 CDS Human protein_coding chr1:196799792 chr1:196799796 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_92667 0 0 0 0 1 CFHR1 chr1:196799812 5'GT 196799812 Upstream 17bp
chr19 56204083 56204083 1 + C T UCEC 56204080 + 56204060 56204100 41 CCGGTCAGTGGGCCCTCAGCCTCCGATCCCTGGACACCGGC CCGGTCAGTGGGCCCTCAGCCTCTGATCCCTGGACACCGGC < 41bp 0.747890660681387 0.541116826236573 0.6558762 0.27259254 prediction 0.413547668889628 Functional Loss - EPN1 ENSG00000063245 CDS Human protein_coding chr19:56204080 chr19:56204083 synonymous SNV . 0 24 hm5C_associated_SNPs_92669 0 0 1 0 2 EPN1 chr19:56204052 3'AG 56204052 Downstream 32bp
chr19 56204083 56204083 1 + C T UCEC 56204080 + 56204060 56204100 41 CCGGTCAGTGGGCCCTCAGCCTCCGATCCCTGGACACCGGC CCGGTCAGTGGGCCCTCAGCCTCTGATCCCTGGACACCGGC < 41bp 0.747890660681387 0.541116826236573 0.6558762 0.27259254 prediction 0.413547668889628 Functional Loss - EPN1 ENSG00000063245 CDS Human protein_coding chr19:56204080 chr19:56204083 synonymous SNV . 0 24 hm5C_associated_SNPs_92669 0 0 1 0 2 EPN1 chr19:56204162 5'GT 56204162 Upstream 80bp
chr1 22835692 22835692 1 + C T LUSC 22835690 + 22835670 22835710 41 ATTGAGTACAAGCTCTTTACCTCGGAGGAGGAGCACCTGGC ATTGAGTACAAGCTCTTTACCTTGGAGGAGGAGCACCTGGC < 41bp 0.706772155631572 0.419734259272835 0.013471335 0.019098967 prediction 0.413544311263144 Functional Loss - ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22835690 chr1:22835692 nonsynonymous SNV 0.039 1 23 hm5C_associated_SNPs_92670 0 0 1 0 2 ZBTB40 chr1:22835593 3'AG 22835593 Downstream 100bp
chr1 22835692 22835692 1 + C T LUSC 22835690 + 22835670 22835710 41 ATTGAGTACAAGCTCTTTACCTCGGAGGAGGAGCACCTGGC ATTGAGTACAAGCTCTTTACCTTGGAGGAGGAGCACCTGGC < 41bp 0.706772155631572 0.419734259272835 0.013471335 0.019098967 prediction 0.413544311263144 Functional Loss - ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22835690 chr1:22835692 nonsynonymous SNV 0.039 1 23 hm5C_associated_SNPs_92670 0 0 1 0 2 ZBTB40 chr1:22835726 5'GT 22835726 Upstream 35bp
chr19 41627960 41627960 1 + C T UCEC 41627957 + 41627937 41627977 41 CTGAGAGACCTCATCGCCCACAGCGTCCACGACCACCAGGC CTGAGAGACCTCATCGCCCACAGTGTCCACGACCACCAGGC < 41bp 0.717377133768484 0.510608809245238 0.4023977 0.38036567 prediction 0.413536649046491 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41627957 chr19:41627960 synonymous SNV . 0 24 hm5C_associated_SNPs_92673 0 0 0 0 2 CYP2F1 chr19:41627862 3'AG 41627862 Downstream 99bp
chr19 41627960 41627960 1 + C T UCEC 41627957 + 41627937 41627977 41 CTGAGAGACCTCATCGCCCACAGCGTCCACGACCACCAGGC CTGAGAGACCTCATCGCCCACAGTGTCCACGACCACCAGGC < 41bp 0.717377133768484 0.510608809245238 0.4023977 0.38036567 prediction 0.413536649046491 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41627957 chr19:41627960 synonymous SNV . 0 24 hm5C_associated_SNPs_92673 0 0 0 0 2 CYP2F1 chr19:41628038 5'GT 41628038 Upstream 79bp
chr15 76494550 76494550 1 + G A SKCM 76494547 + 76494527 76494567 41 GTCCCCACCTCTGTAGAAGCCACGATGAAGGACGACATGAA GTCCCCACCTCTGTAGAAGCCACAATGAAGGACGACATGAA < 41bp 0.70676634210115 0.467482230789856 0.18238711 0.20849386 prediction 0.413532684202299 Functional Loss - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76494547 chr15:76494550 synonymous SNV . 0 24 hm5C_associated_SNPs_92678 0 0 0 0 2 TMEM266 chr15:76494543 3'AG 76494543 Downstream 8bp
chr15 76494550 76494550 1 + G A SKCM 76494547 + 76494527 76494567 41 GTCCCCACCTCTGTAGAAGCCACGATGAAGGACGACATGAA GTCCCCACCTCTGTAGAAGCCACAATGAAGGACGACATGAA < 41bp 0.70676634210115 0.467482230789856 0.18238711 0.20849386 prediction 0.413532684202299 Functional Loss - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76494547 chr15:76494550 synonymous SNV . 0 24 hm5C_associated_SNPs_92678 0 0 0 0 2 TMEM266 chr15:76494605 5'GT 76494605 Upstream 56bp
chr15 76494549 76494549 1 + C T SKCM 76494547 + 76494527 76494567 41 GTCCCCACCTCTGTAGAAGCCACGATGAAGGACGACATGAA GTCCCCACCTCTGTAGAAGCCATGATGAAGGACGACATGAA < 41bp 0.70676634210115 0.41425636961014 0.18238711 0.18448448 prediction 0.413532684202299 Functional Loss - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76494547 chr15:76494549 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_92679 0 0 0 0 2 TMEM266 chr15:76494543 3'AG 76494543 Downstream 7bp
chr15 76494549 76494549 1 + C T SKCM 76494547 + 76494527 76494567 41 GTCCCCACCTCTGTAGAAGCCACGATGAAGGACGACATGAA GTCCCCACCTCTGTAGAAGCCATGATGAAGGACGACATGAA < 41bp 0.70676634210115 0.41425636961014 0.18238711 0.18448448 prediction 0.413532684202299 Functional Loss - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76494547 chr15:76494549 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_92679 0 0 0 0 2 TMEM266 chr15:76494605 5'GT 76494605 Upstream 57bp
chrX 149828947 149828947 1 + G A UCEC 149828944 + 149828924 149828964 41 CTTATTCAACTGTGAATCTGCTCGAGAAAGACAGGTGAGTT CTTATTCAACTGTGAATCTGCTCAAGAAAGACAGGTGAGTT < 41bp 0.762451096610481 0.555687248177326 0.20600474 0.095036685 prediction 0.413527696866311 Functional Loss - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149828944 chrX:149828947 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_92680 0 0 0 0 1 MTM1 chrX:149828957 5'GT 149828957 Upstream 11bp
chr3 51981903 51981903 1 + C T SKCM 51981901 + 51981881 51981921 41 AGTGTCATTGCCCGAGGCCACACCGAGCCTGGTGAGTCCTC AGTGTCATTGCCCGAGGCCACATCGAGCCTGGTGAGTCCTC < 41bp 0.706762405707629 0.438876247278364 0.39795005 0.52611345 prediction 0.413524811415259 Functional Loss - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51981901 chr3:51981903 nonsynonymous SNV 0.930 0 23 hm5C_associated_SNPs_92681 0 0 0 0 1 PARP3 chr3:51981911 5'GT 51981911 Upstream 9bp
chr1 100964519 100964519 1 + G A SKCM 100964516 + 100964496 100964536 41 ACTCCCGGCTAGCCAGTTCTCTAGGGAACTTGAATGCTGCA ACTCCCGGCTAGCCAGTTCTCTAAGGAACTTGAATGCTGCA < 41bp 0.765952934082434 0.559192511124622 0.8270437 0.5486476 prediction 0.413520845915624 Functional Loss - CDC14A ENSG00000079335 CDS Human protein_coding chr1:100964516 chr1:100964519 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_92683 0 0 1 0 1 CDC14A chr1:100964485 3'AG 100964485 Downstream 35bp
chr16 83998718 83998718 1 + G A rs111436159 83998715 + 83998695 83998735 41 GGGGACATCGCCCACTACTACAGGGACTACGTGGTCAAGAA GGGGACATCGCCCACTACTACAGAGACTACGTGGTCAAGAA < 41bp 0.805563932691192 0.598804154667322 0.92028564 0.8875721 prediction 0.41351955604774 Functional Loss - OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83998715 chr16:83998718 synonymous SNV . 0 24 hm5C_associated_SNPs_92684 0 0 0 0 1 OSGIN1 chr16:83998667 3'AG 83998667 Downstream 52bp
chr1 146766109 146766109 1 + G A STAD 146766106 + 146766086 146766126 41 AATAGCAAGTGTTCATCTTCCACGTATTGGACATGCCACGA AATAGCAAGTGTTCATCTTCCACATATTGGACATGCCACGA < 41bp 0.706758878859003 0.480594635163106 0.09241918 0.09412974 prediction 0.413517757718005 Functional Loss - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146766106 chr1:146766109 nonsynonymous SNV 0.987 4 24 hm5C_associated_SNPs_92686 0 0 1 0 2 CHD1L chr1:146766091 3'AG 146766091 Downstream 19bp
chr1 146766109 146766109 1 + G A STAD 146766106 + 146766086 146766126 41 AATAGCAAGTGTTCATCTTCCACGTATTGGACATGCCACGA AATAGCAAGTGTTCATCTTCCACATATTGGACATGCCACGA < 41bp 0.706758878859003 0.480594635163106 0.09241918 0.09412974 prediction 0.413517757718005 Functional Loss - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146766106 chr1:146766109 nonsynonymous SNV 0.987 4 24 hm5C_associated_SNPs_92686 0 0 1 0 2 CHD1L chr1:146766199 5'GT 146766199 Upstream 91bp
chr1 178269233 178269233 1 + C T SKCM 178269230 + 178269210 178269250 41 GGGTCAGTTTCCCGAGTACCCACCAGAGGGCGCCACTAAAC GGGTCAGTTTCCCGAGTACCCACTAGAGGGCGCCACTAAAC < 41bp 0.742155628422074 0.535396894692453 0.2677198 0.2720933 prediction 0.413517467459243 Functional Loss - RASAL2 ENSG00000075391 CDS Human protein_coding chr1:178269230 chr1:178269233 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_92687 0 0 0 0 1 RASAL2 chr1:178269253 5'GT 178269253 Upstream 21bp
chr9 138440624 138440624 1 + G A rs3827835 138440621 + 138440601 138440641 41 TTGGTGCAGCACAAGGGACTCTCGGAGGAGGACATTTTCAT TTGGTGCAGCACAAGGGACTCTCAGAGGAGGACATTTTCAT < 41bp 0.706756310011056 0.466606073389055 0.13926947 0.027461648 prediction 0.413512620022112 Functional Loss - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138440621 chr9:138440624 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_92689 0 0 0 0 2 OBP2A chr9:138440554 3'AG 138440554 Downstream 71bp
chr9 138440624 138440624 1 + G A rs3827835 138440621 + 138440601 138440641 41 TTGGTGCAGCACAAGGGACTCTCGGAGGAGGACATTTTCAT TTGGTGCAGCACAAGGGACTCTCAGAGGAGGACATTTTCAT < 41bp 0.706756310011056 0.466606073389055 0.13926947 0.027461648 prediction 0.413512620022112 Functional Loss - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138440621 chr9:138440624 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_92689 0 0 0 0 2 OBP2A chr9:138440655 5'GT 138440655 Upstream 32bp
chr9 138440623 138440623 1 + C T STAD 138440621 + 138440601 138440641 41 TTGGTGCAGCACAAGGGACTCTCGGAGGAGGACATTTTCAT TTGGTGCAGCACAAGGGACTCTTGGAGGAGGACATTTTCAT < 41bp 0.706756310011056 0.438557549719343 0.13926947 0.14740428 prediction 0.413512620022112 Functional Loss - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138440621 chr9:138440623 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_92690 0 0 0 0 2 OBP2A chr9:138440554 3'AG 138440554 Downstream 70bp
chr9 138440623 138440623 1 + C T STAD 138440621 + 138440601 138440641 41 TTGGTGCAGCACAAGGGACTCTCGGAGGAGGACATTTTCAT TTGGTGCAGCACAAGGGACTCTTGGAGGAGGACATTTTCAT < 41bp 0.706756310011056 0.438557549719343 0.13926947 0.14740428 prediction 0.413512620022112 Functional Loss - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138440621 chr9:138440623 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_92690 0 0 0 0 2 OBP2A chr9:138440655 5'GT 138440655 Upstream 33bp
chr7 98256519 98256519 1 + C T HNSC 98256516 + 98256496 98256536 41 TTGTCAGTGACGGCAAGTGGCACCACATCTGTGTCACCTGG TTGTCAGTGACGGCAAGTGGCACTACATCTGTGTCACCTGG < 41bp 0.706755580588702 0.489455564704231 0.03658101 0.08716333 prediction 0.413511161177404 Functional Loss - NPTX2 ENSG00000106236 CDS Human protein_coding chr7:98256516 chr7:98256519 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_92692 0 0 1 0 1 NPTX2 chr7:98256477 3'AG 98256477 Downstream 43bp
chr16 3189016 3189016 1 + G C BLCA 3189015 + 3188995 3189035 41 ACATCCCATTCTATTTCTCCCGGGAAGAATGGGGCACCCTG ACATCCCATTCTATTTCTCCCCGGAAGAATGGGGCACCCTG < 41bp 0.890203223174109 0.683451156746928 0.89111406 0.33272994 prediction 0.413504132854362 Functional Loss - ZNF213 ENSG00000085644 CDS Human protein_coding chr16:3189015 chr16:3189016 nonsynonymous SNV 0.994 0 22 hm5C_associated_SNPs_92693 0 0 1 0 2 ZNF213 chr16:3188976 3'AG 3188976 Downstream 41bp
chr16 3189016 3189016 1 + G C BLCA 3189015 + 3188995 3189035 41 ACATCCCATTCTATTTCTCCCGGGAAGAATGGGGCACCCTG ACATCCCATTCTATTTCTCCCCGGAAGAATGGGGCACCCTG < 41bp 0.890203223174109 0.683451156746928 0.89111406 0.33272994 prediction 0.413504132854362 Functional Loss - ZNF213 ENSG00000085644 CDS Human protein_coding chr16:3189015 chr16:3189016 nonsynonymous SNV 0.994 0 22 hm5C_associated_SNPs_92693 0 0 1 0 2 ZNF213 chr16:3189099 5'GT 3189099 Upstream 84bp
chr20 61943785 61943785 1 + G A SKCM 61943782 + 61943762 61943802 41 CCTGCTGCAGACAGAGGCTCCTGGGAACGCCACCTCGGCCA CCTGCTGCAGACAGAGGCTCCTGAGAACGCCACCTCGGCCA < 41bp 0.813061640236813 0.606309797829638 0.94495904 0.93430674 prediction 0.413503684814349 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61943782 chr20:61943785 nonsynonymous SNV 0.296 4 24 hm5C_associated_SNPs_92694 0 0 0 0 1 COL20A1 chr20:61943772 3'AG 61943772 Downstream 14bp
chr11 43351532 43351532 1 + G T LUSC 43351529 + 43351509 43351549 41 ATTTAGGCTGCAGTACTTTGCACGGGGCCTGCAAGTTTATA ATTTAGGCTGCAGTACTTTGCACTGGGCCTGCAAGTTTATA < 41bp 0.706750722382292 0.324468714811392 0.44480786 0.062458277 prediction 0.413501444764584 Functional Loss - API5 ENSG00000166181 CDS Human protein_coding chr11:43351529 chr11:43351532 nonsynonymous SNV 0.889 4 24 hm5C_associated_SNPs_92698 0 0 1 0 2 API5 chr11:43351515 3'AG 43351515 Downstream 18bp
chr11 43351532 43351532 1 + G T LUSC 43351529 + 43351509 43351549 41 ATTTAGGCTGCAGTACTTTGCACGGGGCCTGCAAGTTTATA ATTTAGGCTGCAGTACTTTGCACTGGGCCTGCAAGTTTATA < 41bp 0.706750722382292 0.324468714811392 0.44480786 0.062458277 prediction 0.413501444764584 Functional Loss - API5 ENSG00000166181 CDS Human protein_coding chr11:43351529 chr11:43351532 nonsynonymous SNV 0.889 4 24 hm5C_associated_SNPs_92698 0 0 1 0 2 API5 chr11:43351608 5'GT 43351608 Upstream 77bp
chr11 43351531 43351531 1 + C T PAAD 43351529 + 43351509 43351549 41 ATTTAGGCTGCAGTACTTTGCACGGGGCCTGCAAGTTTATA ATTTAGGCTGCAGTACTTTGCATGGGGCCTGCAAGTTTATA < 41bp 0.706750722382292 0.429300738900864 0.44480786 0.3101949 prediction 0.413501444764584 Functional Loss - API5 ENSG00000166181 CDS Human protein_coding chr11:43351529 chr11:43351531 nonsynonymous SNV 0.904 4 23 hm5C_associated_SNPs_92699 0 0 1 0 2 API5 chr11:43351515 3'AG 43351515 Downstream 17bp
chr11 43351531 43351531 1 + C T PAAD 43351529 + 43351509 43351549 41 ATTTAGGCTGCAGTACTTTGCACGGGGCCTGCAAGTTTATA ATTTAGGCTGCAGTACTTTGCATGGGGCCTGCAAGTTTATA < 41bp 0.706750722382292 0.429300738900864 0.44480786 0.3101949 prediction 0.413501444764584 Functional Loss - API5 ENSG00000166181 CDS Human protein_coding chr11:43351529 chr11:43351531 nonsynonymous SNV 0.904 4 23 hm5C_associated_SNPs_92699 0 0 1 0 2 API5 chr11:43351608 5'GT 43351608 Upstream 78bp
chr14 23075345 23075345 1 + C T CESC 23075342 + 23075322 23075362 41 TCCCAGGGCCTGGTCTGGTGCAGCGATTCCGGCCGGACTTC TCCCAGGGCCTGGTCTGGTGCAGTGATTCCGGCCGGACTTC < 41bp 0.726982196447202 0.520231642052243 0.38435456 0.45878762 prediction 0.413501108789919 Functional Loss - ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23075342 chr14:23075345 stopgain 0.999 1 24 hm5C_associated_SNPs_92700 0 0 1 0 2 ABHD4 chr14:23075328 3'AG 23075328 Downstream 18bp
chr14 23075345 23075345 1 + C T CESC 23075342 + 23075322 23075362 41 TCCCAGGGCCTGGTCTGGTGCAGCGATTCCGGCCGGACTTC TCCCAGGGCCTGGTCTGGTGCAGTGATTCCGGCCGGACTTC < 41bp 0.726982196447202 0.520231642052243 0.38435456 0.45878762 prediction 0.413501108789919 Functional Loss - ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23075342 chr14:23075345 stopgain 0.999 1 24 hm5C_associated_SNPs_92700 0 0 1 0 2 ABHD4 chr14:23075439 5'GT 23075439 Upstream 95bp
chr11 124857973 124857973 1 + C T HNSC 124857970 + 124857950 124857990 41 CCCAGAGACCTGCATGTTCTCTCCAACGACCAGAATATTCT CCCAGAGACCTGCATGTTCTCTCTAACGACCAGAATATTCT < 41bp 0.777534128126006 0.57078779316084 0.95872307 0.9225551 prediction 0.413492669930331 Functional Loss - CCDC15 ENSG00000149548 CDS Human protein_coding chr11:124857970 chr11:124857973 synonymous SNV . 0 24 hm5C_associated_SNPs_92702 0 0 1 0 1 CCDC15 chr11:124858030 5'GT 124858030 Upstream 58bp
chr13 53042436 53042436 1 + G A COAD 53042433 + 53042413 53042453 41 CCTATTGAAGAGATGCGACACACGATTGTAGATATTCTAAC CCTATTGAAGAGATGCGACACACAATTGTAGATATTCTAAC < 41bp 0.756204610135922 0.549460114283286 0.016058177 0.014737666 prediction 0.413488991705272 Functional Loss - CKAP2 ENSG00000136108 CDS Human protein_coding chr13:53042433 chr13:53042436 synonymous SNV . 0 24 hm5C_associated_SNPs_92703 0 0 1 0 2 CKAP2 chr13:53042413 3'AG 53042413 Downstream 24bp
chr13 53042436 53042436 1 + G A COAD 53042433 + 53042413 53042453 41 CCTATTGAAGAGATGCGACACACGATTGTAGATATTCTAAC CCTATTGAAGAGATGCGACACACAATTGTAGATATTCTAAC < 41bp 0.756204610135922 0.549460114283286 0.016058177 0.014737666 prediction 0.413488991705272 Functional Loss - CKAP2 ENSG00000136108 CDS Human protein_coding chr13:53042433 chr13:53042436 synonymous SNV . 0 24 hm5C_associated_SNPs_92703 0 0 1 0 2 CKAP2 chr13:53042482 5'GT 53042482 Upstream 47bp
chr11 119044199 119044199 1 + C T rs199946639 119044196 + 119044176 119044216 41 CTTCCCACTCAGAAGCTATACAGCGGCACCGCCGGAACCTG CTTCCCACTCAGAAGCTATACAGTGGCACCGCCGGAACCTG < 41bp 0.706744386061102 0.498686954715716 0.1027396 0.05069831 prediction 0.413488772122204 Functional Loss - NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119044196 chr11:119044199 nonsynonymous SNV 0.009 2 24 hm5C_associated_SNPs_92704 0 0 0 0 1 NLRX1 chr11:119044188 3'AG 119044188 Downstream 12bp
chr19 36124095 36124095 1 + C T UCEC 36124093 + 36124073 36124113 41 TGGACCACCCATGATGCTGCCACCAATGGCTCGGGCTCCAG TGGACCACCCATGATGCTGCCATCAATGGCTCGGGCTCCAG < 41bp 0.864864063285439 0.658125214163282 0.22430497 0.11762282 prediction 0.413477698244315 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124093 chr19:36124095 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_92707 0 0 1 0 3 RBM42 chr19:36124000 3'AG 36124000 Downstream 96bp
chr19 36124095 36124095 1 + C T UCEC 36124093 + 36124073 36124113 41 TGGACCACCCATGATGCTGCCACCAATGGCTCGGGCTCCAG TGGACCACCCATGATGCTGCCATCAATGGCTCGGGCTCCAG < 41bp 0.864864063285439 0.658125214163282 0.22430497 0.11762282 prediction 0.413477698244315 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124093 chr19:36124095 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_92707 0 0 1 0 3 RBM42 chr19:36124003 3'AG 36124003 Downstream 93bp
chr19 36124095 36124095 1 + C T UCEC 36124093 + 36124073 36124113 41 TGGACCACCCATGATGCTGCCACCAATGGCTCGGGCTCCAG TGGACCACCCATGATGCTGCCATCAATGGCTCGGGCTCCAG < 41bp 0.864864063285439 0.658125214163282 0.22430497 0.11762282 prediction 0.413477698244315 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124093 chr19:36124095 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_92707 0 0 1 0 3 RBM42 chr19:36124154 5'GT 36124154 Upstream 60bp
chr9 135447804 135447804 1 + G A SKCM 135447801 + 135447781 135447821 41 CGCCACCTTGATACGTTCCCCACGGAGGCCGATCGCCAGAG CGCCACCTTGATACGTTCCCCACAGAGGCCGATCGCCAGAG < 41bp 0.821689444650155 0.614952122856965 0.22662798 0.029053599 prediction 0.41347464358638 Functional Loss - CFAP77 ENSG00000188523 CDS Human protein_coding chr9:135447801 chr9:135447804 synonymous SNV . 0 24 hm5C_associated_SNPs_92708 0 0 0 0 1 CFAP77 chr9:135447775 3'AG 135447775 Downstream 30bp
chr2 231264881 231264881 1 + G T LUAD 231264877 + 231264857 231264897 41 GAGTGTGAGGTGTGCCGGGACGGAGGGGAGCTGTTCTGTTG GAGTGTGAGGTGTGCCGGGACGGATGGGAGCTGTTCTGTTG < 41bp 0.706736529135173 0.494404681376134 0.4677459 0.19511408 prediction 0.413473058270345 Functional Loss - SP140L ENSG00000185404 CDS Human protein_coding chr2:231264877 chr2:231264881 nonsynonymous SNV 0.010 4 25 hm5C_associated_SNPs_92711 0 0 0 0 2 SP140L chr2:231264842 3'AG 231264842 Downstream 40bp
chr2 231264881 231264881 1 + G T LUAD 231264877 + 231264857 231264897 41 GAGTGTGAGGTGTGCCGGGACGGAGGGGAGCTGTTCTGTTG GAGTGTGAGGTGTGCCGGGACGGATGGGAGCTGTTCTGTTG < 41bp 0.706736529135173 0.494404681376134 0.4677459 0.19511408 prediction 0.413473058270345 Functional Loss - SP140L ENSG00000185404 CDS Human protein_coding chr2:231264877 chr2:231264881 nonsynonymous SNV 0.010 4 25 hm5C_associated_SNPs_92711 0 0 0 0 2 SP140L chr2:231264957 5'GT 231264957 Upstream 77bp
chr11 72554311 72554311 1 - C T UCEC 72554314 - 72554294 72554334 41 AAGTACCTACAGTTTCCCACCTCGAACAGCCTCCTGAGCAT AAGTACCTACAGTTTCCCACCTCAAACAGCCTCCTGAGCAT < 41bp 0.806507628518155 0.599772322659811 0.34921104 0.058886617 prediction 0.413470611716689 Functional Loss - FCHSD2 ENSG00000137478 CDS Human protein_coding chr11:72554314 chr11:72554311 synonymous SNV . 0 24 hm5C_associated_SNPs_92712 0 0 1 0 1 FCHSD2 chr11:72554373 3'AG 72554373 Downstream 63bp
chr11 113813859 113813859 1 + C T LUSC 113813856 + 113813836 113813876 41 GTGCTGGTGGGCTACACCGTCTTCAGGGTCAACATGTCCAA GTGCTGGTGGGCTACACCGTCTTTAGGGTCAACATGTCCAA < 41bp 0.774930073881748 0.568195486045567 0.07339266 0.07378197 prediction 0.413469175672363 Functional Loss - HTR3B ENSG00000149305 CDS Human protein_coding chr11:113813856 chr11:113813859 synonymous SNV . 0 24 hm5C_associated_SNPs_92713 0 0 0 0 1 HTR3B chr11:113813914 5'GT 113813914 Upstream 56bp
chr19 58906057 58906057 1 + G A CESC 58906054 + 58906034 58906074 41 TGTGTCTCCTTGCAGGGCTCCTCGAACTCCTATGCCATTAA TGTGTCTCCTTGCAGGGCTCCTCAAACTCCTATGCCATTAA < 41bp 0.800699655392938 0.593965906307835 0.8846183 0.90778977 prediction 0.413467498170206 Functional Loss - RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906054 chr19:58906057 synonymous SNV . 0 24 hm5C_associated_SNPs_92714 0 0 1 0 1 RPS5 chr19:58906049 3'AG 58906049 Downstream 9bp
chr19 36510196 36510196 1 - G A UCEC 36510199 - 36510179 36510219 41 TCTCTCCCCAGACGGGCACACTGCGGTTCTGTGGGACCACG TCTCTCCCCAGACGGGCACACTGTGGTTCTGTGGGACCACG < 41bp 0.759167556751251 0.552434816715289 0.32848495 0.25460297 prediction 0.413465480071924 Functional Loss - CLIP3;LOC101927572 ENSG00000105270 CDS Human protein_coding chr19:36510199 chr19:36510196 nonsynonymous SNV 0.902 5 24 hm5C_associated_SNPs_92716 0 0 0 0 1 CLIP3;LOC101927572 chr19:36510208 3'AG 36510208 Downstream 13bp
chr19 54651887 54651887 1 + C T TGCT 54651884 + 54651864 54651904 41 TGCTCTCTCCCACCCGCAGTCTCCAGCCAAAAACGGCTCCA TGCTCTCTCCCACCCGCAGTCTCTAGCCAAAAACGGCTCCA < 41bp 0.784235454536165 0.577508087564403 0.9367179 0.45412636 prediction 0.413454733943524 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54651884 chr19:54651887 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_92722 0 0 1 0 1 CNOT3 chr19:54651883 3'AG 54651883 Downstream 5bp
chr6 71123380 71123380 1 + G T rs372906765 71123378 + 71123358 71123398 41 GAGCTCCTCCGTTCGACAGGCGGGGGAAGAGGCCGAGCCGG GAGCTCCTCCGTTCGACAGGCGTGGGAAGAGGCCGAGCCGG < 41bp 0.908957319044761 0.702231853733166 0.93254423 0.88013834 prediction 0.413450930623192 Functional Loss - FAM135A ENSG00000224349 ncRNA_intronic Human antisense chr6:71123378 chr6:71123380 . . 0 23 hm5C_associated_SNPs_92724 0 0 1 0 1 FAM135A chr6:71123405 5'GT 71123405 Upstream 26bp
chr19 49442790 49442790 1 + C T CESC 49442788 + 49442768 49442808 41 TCTAGGAGACCTCCGGGTGGCTCGGGCAGAATTTGGGAAGA TCTAGGAGACCTCCGGGTGGCTTGGGCAGAATTTGGGAAGA < 41bp 0.864496324065963 0.657776451237451 0.8971797 0.89692485 prediction 0.413439745657023 Functional Loss - DHDH ENSG00000104808 CDS Human protein_coding chr19:49442788 chr19:49442790 nonsynonymous SNV 0.968 2 23 hm5C_associated_SNPs_92728 0 0 0 0 1 DHDH chr19:49442706 3'AG 49442706 Downstream 85bp
chr6 96997310 96997310 1 + G A UCEC 96997307 + 96997287 96997327 41 GACCTCTTAATAAAACTTATCTCGAGGTGGTACGTTCAGTA GACCTCTTAATAAAACTTATCTCAAGGTGGTACGTTCAGTA < 41bp 0.736713285565728 0.529994098997657 0.23738316 0.12397185 prediction 0.413438373136142 Functional Loss - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96997307 chr6:96997310 nonsynonymous SNV 0.895 1 24 hm5C_associated_SNPs_92729 0 0 1 3 1 UFL1 chr6:96997288 3'AG 96997288 Downstream 23bp
chrX 47230094 47230094 1 + G T SARC 47230092 + 47230072 47230112 41 CAGCTAATGGGACATCACCCCAGAGATTCCCTGCCCTGATT CAGCTAATGGGACATCACCCCATAGATTCCCTGCCCTGATT < 41bp 0.706714142051416 0.347523412632281 0.8733666 0.1483747 prediction 0.413428284102832 Functional Loss - ZNF157 ENSG00000147117 CDS Human protein_coding chrX:47230092 chrX:47230094 nonsynonymous SNV 0.985 2 23 hm5C_associated_SNPs_92732 0 0 0 0 1 ZNF157 chrX:47230139 5'GT 47230139 Upstream 46bp
chr19 3204128 3204128 1 + C T UCEC 3204125 + 3204105 3204145 41 GCACCCTGCAGCACGCCTTCCTGCGGGAGCTGGAGACGGTG GCACCCTGCAGCACGCCTTCCTGTGGGAGCTGGAGACGGTG < 41bp 0.706713054942586 0.49478475993804 0.23620144 0.15499935 prediction 0.413426109885172 Functional Loss - NCLN ENSG00000125912 CDS Human protein_coding chr19:3204125 chr19:3204128 nonsynonymous SNV 0.827 3 24 hm5C_associated_SNPs_92734 0 0 1 0 1 NCLN chr19:3204142 5'GT 3204142 Upstream 15bp
chr19 19308039 19308039 1 + C T LUSC 19308036 + 19308016 19308056 41 CAGCACAGGGGGAGCTGGACCAGCTGAAGGAGCATTTGCGG CAGCACAGGGGGAGCTGGACCAGTTGAAGGAGCATTTGCGG < 41bp 0.718731343809174 0.512022818940103 0.83553755 0.7971159 prediction 0.413417049738142 Functional Loss - RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308036 chr19:19308039 synonymous SNV . 0 24 hm5C_associated_SNPs_92738 0 0 1 0 2 RFXANK chr19:19307995 3'AG 19307995 Downstream 45bp
chr19 19308039 19308039 1 + C T LUSC 19308036 + 19308016 19308056 41 CAGCACAGGGGGAGCTGGACCAGCTGAAGGAGCATTTGCGG CAGCACAGGGGGAGCTGGACCAGTTGAAGGAGCATTTGCGG < 41bp 0.718731343809174 0.512022818940103 0.83553755 0.7971159 prediction 0.413417049738142 Functional Loss - RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308036 chr19:19308039 synonymous SNV . 0 24 hm5C_associated_SNPs_92738 0 0 1 0 2 RFXANK chr19:19308060 5'GT 19308060 Upstream 22bp
chr14 62541887 62541887 1 + G T UCEC 62541883 + 62541863 62541903 41 AGCCAGCCAACGGCGTTATTCTGAGAATCTCTCCTACGGTG AGCCAGCCAACGGCGTTATTCTGATAATCTCTCCTACGGTG < 41bp 0.743216645594294 0.536508469152729 0.72476053 0.36613148 prediction 0.413416352883129 Functional Loss - SYT16 ENSG00000139973 CDS Human protein_coding chr14:62541883 chr14:62541887 nonsynonymous SNV 0.980 0 25 hm5C_associated_SNPs_92739 0 0 0 0 1 SYT16 chr14:62541853 3'AG 62541853 Downstream 35bp
chr1 171174691 171174691 1 + G A rs7536646 171174688 + 171174668 171174708 41 CACCTGGACAAGTCAACCCTCGCGTGCATTGGTCTCATCCA CACCTGGACAAGTCAACCCTCGCATGCATTGGTCTCATCCA < 41bp 0.706706114151632 0.460764288299701 0.25814605 0.10544613 prediction 0.413412228303264 Functional Loss - FMO2 ENSG00000094963 CDS Human protein_coding chr1:171174688 chr1:171174691 synonymous SNV . 0 24 hm5C_associated_SNPs_92742 0 0 0 0 1 FMO2 chr1:171174773 5'GT 171174773 Upstream 83bp
chr22 45221431 45221431 1 + G A STAD 45221428 + 45221408 45221448 41 TCCCACCAAGACACCACCGCCGCGGCCCCCGCTGCCCACAC TCCCACCAAGACACCACCGCCGCAGCCCCCGCTGCCCACAC < 41bp 0.821603476210892 0.614898408057043 0.5838713 0.2583867 prediction 0.413410136307697 Functional Loss - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45221428 chr22:45221431 nonsynonymous SNV 0.518 1 24 hm5C_associated_SNPs_92744 0 0 0 0 2 ARHGAP8;PRR5-ARHGAP8 chr22:45221363 3'AG 45221363 Downstream 69bp
chr22 45221431 45221431 1 + G A STAD 45221428 + 45221408 45221448 41 TCCCACCAAGACACCACCGCCGCGGCCCCCGCTGCCCACAC TCCCACCAAGACACCACCGCCGCAGCCCCCGCTGCCCACAC < 41bp 0.821603476210892 0.614898408057043 0.5838713 0.2583867 prediction 0.413410136307697 Functional Loss - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45221428 chr22:45221431 nonsynonymous SNV 0.518 1 24 hm5C_associated_SNPs_92744 0 0 0 0 2 ARHGAP8;PRR5-ARHGAP8 chr22:45221473 5'GT 45221473 Upstream 43bp
chr22 30762032 30762032 1 + C T UCEC 30762029 + 30762009 30762049 41 GCCAGGCCTGCATGGAGAGCCTGCGCACAGACCTCACCGAC GCCAGGCCTGCATGGAGAGCCTGTGCACAGACCTCACCGAC < 41bp 0.707135156805006 0.500431603405998 0.2690624 0.10135466 prediction 0.413407106798015 Functional Loss - CCDC157 ENSG00000187860 CDS Human protein_coding chr22:30762029 chr22:30762032 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_92745 0 0 0 0 2 CCDC157 chr22:30761933 3'AG 30761933 Downstream 100bp
chr22 30762032 30762032 1 + C T UCEC 30762029 + 30762009 30762049 41 GCCAGGCCTGCATGGAGAGCCTGCGCACAGACCTCACCGAC GCCAGGCCTGCATGGAGAGCCTGTGCACAGACCTCACCGAC < 41bp 0.707135156805006 0.500431603405998 0.2690624 0.10135466 prediction 0.413407106798015 Functional Loss - CCDC157 ENSG00000187860 CDS Human protein_coding chr22:30762029 chr22:30762032 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_92745 0 0 0 0 2 CCDC157 chr22:30761979 3'AG 30761979 Downstream 54bp
chr10 103988605 103988605 1 + C T LIHC 103988602 + 103988582 103988622 41 GAGACACAGCCTTCATCATCCTGCGTAAGCGGCCACTCATC GAGACACAGCCTTCATCATCCTGTGTAAGCGGCCACTCATC < 41bp 0.726791571561749 0.520088189905053 0.21422726 0.19090998 prediction 0.413406763313393 Functional Loss - ELOVL3 ENSG00000119915 CDS Human protein_coding chr10:103988602 chr10:103988605 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_92746 0 0 0 0 1 ELOVL3 chr10:103988582 3'AG 103988582 Downstream 24bp
chr8 67417635 67417635 1 + C T UCEC 67417633 + 67417613 67417653 41 GTGATCGAGTCGGACCTGTACACGCACCAGCCCCTGGAGCT GTGATCGAGTCGGACCTGTACATGCACCAGCCCCTGGAGCT < 41bp 0.70670299288514 0.444525728235146 0.39646453 0.33716613 prediction 0.413405985770281 Functional Loss - C8orf46 ENSG00000169085 CDS Human protein_coding chr8:67417633 chr8:67417635 nonsynonymous SNV 0.104 1 23 hm5C_associated_SNPs_92747 0 0 0 0 1 C8orf46 chr8:67417610 3'AG 67417610 Downstream 26bp
chr10 104622654 104622654 1 + G T UCEC 104622652 + 104622632 104622672 41 TTGAACAGTCATCGGATCTACAGGACCAGTTGAATCATCTG TTGAACAGTCATCGGATCTACATGACCAGTTGAATCATCTG < 41bp 0.706702563386313 0.455424720927331 0.08265811 0.023360968 prediction 0.413405126772625 Functional Loss - BORCS7 ENSG00000166275;ENSG00000270316 CDS Human other chr10:104622652 chr10:104622654 nonsynonymous SNV 0.959 0 23 hm5C_associated_SNPs_92748 0 0 1 0 1 BORCS7-ASMT chr10:104622689 5'GT 104622689 Upstream 36bp
chr20 3792888 3792888 1 + G A rs2282130 3792885 + 3792865 3792905 41 TGGGATGACTACAAGAGGACCGGGGGAGACAGGGAAACACA TGGGATGACTACAAGAGGACCGGAGGAGACAGGGAAACACA < 41bp 0.766593371272333 0.559892755268767 0.91400635 0.90254426 prediction 0.413401232007132 Functional Loss - LINC01730 ENSG00000101224;ENSG00000125843 intergenic Human other chr20:3792885 chr20:3792888 . . 0 24 hm5C_associated_SNPs_92751 0 0 0 0 1 LINC01730 chr20:3792815 3'AG 3792815 Downstream 74bp
chr17 18145901 18145901 1 + G A UCEC 18145898 + 18145878 18145918 41 AGTGCTGACACCACGCTGGACACGACAGGGGACGTCACAGT AGTGCTGACACCACGCTGGACACAACAGGGGACGTCACAGT < 41bp 0.706697664444478 0.464812342778328 0.06262949 0.03735259 prediction 0.413395328888956 Functional Loss - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18145898 chr17:18145901 synonymous SNV . 0 24 hm5C_associated_SNPs_92754 0 0 1 0 2 LLGL1 chr17:18145822 3'AG 18145822 Downstream 80bp
chr17 18145901 18145901 1 + G A UCEC 18145898 + 18145878 18145918 41 AGTGCTGACACCACGCTGGACACGACAGGGGACGTCACAGT AGTGCTGACACCACGCTGGACACAACAGGGGACGTCACAGT < 41bp 0.706697664444478 0.464812342778328 0.06262949 0.03735259 prediction 0.413395328888956 Functional Loss - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18145898 chr17:18145901 synonymous SNV . 0 24 hm5C_associated_SNPs_92754 0 0 1 0 2 LLGL1 chr17:18145942 5'GT 18145942 Upstream 42bp
chr19 11113809 11113809 1 + G T KIRC 11113807 + 11113787 11113827 41 ATGCCCCCAAAGCCGGGCAGCTGGAGGCCTGGCTCGAGATG ATGCCCCCAAAGCCGGGCAGCTTGAGGCCTGGCTCGAGATG < 41bp 0.706695129894348 0.360190719940618 0.8625112 0.5299858 prediction 0.413390259788696 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11113807 chr19:11113809 synonymous SNV . 0 23 hm5C_associated_SNPs_92759 0 0 1 0 1 SMARCA4 chr19:11113835 5'GT 11113835 Upstream 27bp
chr22 21140297 21140297 1 + G A KIRP 21140294 + 21140274 21140314 41 CTTTCCTTTTCTGTCTAGAACTCGAGAAGTGCTTCTGCCGA CTTTCCTTTTCTGTCTAGAACTCAAGAAGTGCTTCTGCCGA < 41bp 0.796524111224104 0.58982973340385 0.38131902 0.11473033 prediction 0.413388755640508 Functional Loss - SERPIND1 ENSG00000099937 CDS Human protein_coding chr22:21140294 chr22:21140297 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_92760 0 0 1 0 1 SERPIND1 chr22:21140292 3'AG 21140292 Downstream 6bp
chrX 48672945 48672945 1 + G T UCEC 48672941 + 48672921 48672961 41 CCACAGGTTTCGGCCAAGGCCAAGGATATACCATCAATGTG CCACAGGTTTCGGCCAAGGCCAAGTATATACCATCAATGTG < 41bp 0.711194595767715 0.504500995584528 0.117655545 0.08965841 prediction 0.413387200366374 Functional Loss - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48672941 chrX:48672945 nonsynonymous SNV 0.909 4 25 hm5C_associated_SNPs_92761 0 0 1 0 1 HDAC6 chrX:48672973 5'GT 48672973 Upstream 29bp
chr17 42231990 42231990 1 + C T COAD 42231988 + 42231968 42232008 41 GGTGATGATCAAGTCCCTGACTCGGAGCACAATGGACGCCA GGTGATGATCAAGTCCCTGACTTGGAGCACAATGGACGCCA < 41bp 0.870073678486415 0.663381248371079 0.12052819 0.098783344 prediction 0.413384860230671 Functional Loss - C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42231988 chr17:42231990 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_92763 0 0 1 1 3 C17orf53 chr17:42231921 3'AG 42231921 Downstream 70bp
chr17 42231990 42231990 1 + C T COAD 42231988 + 42231968 42232008 41 GGTGATGATCAAGTCCCTGACTCGGAGCACAATGGACGCCA GGTGATGATCAAGTCCCTGACTTGGAGCACAATGGACGCCA < 41bp 0.870073678486415 0.663381248371079 0.12052819 0.098783344 prediction 0.413384860230671 Functional Loss - C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42231988 chr17:42231990 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_92763 0 0 1 1 3 C17orf53 chr17:42231924 3'AG 42231924 Downstream 67bp
chr17 42231990 42231990 1 + C T COAD 42231988 + 42231968 42232008 41 GGTGATGATCAAGTCCCTGACTCGGAGCACAATGGACGCCA GGTGATGATCAAGTCCCTGACTTGGAGCACAATGGACGCCA < 41bp 0.870073678486415 0.663381248371079 0.12052819 0.098783344 prediction 0.413384860230671 Functional Loss - C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42231988 chr17:42231990 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_92763 0 0 1 1 3 C17orf53 chr17:42232032 5'GT 42232032 Upstream 43bp
chr1 1562801 1562801 1 + G A PRAD 1562798 + 1562778 1562818 41 CTGCCGGACGACGAGGGCAACACGGCACTGCACTACGCGGC CTGCCGGACGACGAGGGCAACACAGCACTGCACTACGCGGC < 41bp 0.791663697286492 0.584973099386635 0.70561284 0.36462468 prediction 0.413381195799714 Functional Loss - MIB2 ENSG00000197530 CDS Human protein_coding chr1:1562798 chr1:1562801 synonymous SNV . 0 24 hm5C_associated_SNPs_92766 0 0 1 0 1 MIB2 chr1:1562824 5'GT 1562824 Upstream 24bp
chr17 40173651 40173651 1 + C T CESC 40173648 + 40173628 40173668 41 CCAGGCGTCTGTGGGCAAAACTTCAATCCTGGAGCAGCTTC CCAGGCGTCTGTGGGCAAAACTTTAATCCTGGAGCAGCTTC < 41bp 0.786382727335543 0.579693826549353 0.52213085 0.240424 prediction 0.413377801572379 Functional Loss - NKIRAS2 ENSG00000168256 CDS Human protein_coding chr17:40173648 chr17:40173651 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_92768 0 0 1 0 2 NKIRAS2 chr17:40173582 3'AG 40173582 Downstream 70bp
chr17 40173651 40173651 1 + C T CESC 40173648 + 40173628 40173668 41 CCAGGCGTCTGTGGGCAAAACTTCAATCCTGGAGCAGCTTC CCAGGCGTCTGTGGGCAAAACTTTAATCCTGGAGCAGCTTC < 41bp 0.786382727335543 0.579693826549353 0.52213085 0.240424 prediction 0.413377801572379 Functional Loss - NKIRAS2 ENSG00000168256 CDS Human protein_coding chr17:40173648 chr17:40173651 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_92768 0 0 1 0 2 NKIRAS2 chr17:40173689 5'GT 40173689 Upstream 39bp
chr2 73828471 73828471 1 + G T LUSC 73828468 + 73828448 73828488 41 CACTGCGGGAGCAGAACTGTCAGGGGCAGCACCTGGACGGT CACTGCGGGAGCAGAACTGTCAGTGGCAGCACCTGGACGGT < 41bp 0.706688832227364 0.336929105544451 0.9430604 0.90216744 prediction 0.413377664454728 Functional Loss - ALMS1 ENSG00000116127 CDS Human protein_coding chr2:73828468 chr2:73828471 nonsynonymous SNV 0.350 2 24 hm5C_associated_SNPs_92769 0 0 0 0 1 ALMS1 chr2:73828563 5'GT 73828563 Upstream 93bp
chr9 131847815 131847815 1 + C T UCEC 131847812 + 131847792 131847832 41 CGCAGAATGCACCAAACAAACAACGCCAGGTTCCTGGACTT CGCAGAATGCACCAAACAAACAATGCCAGGTTCCTGGACTT < 41bp 0.730081278263172 0.523395687254166 0.4081485 0.44391286 prediction 0.413371182018011 Functional Loss - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131847812 chr9:131847815 synonymous SNV . 0 24 hm5C_associated_SNPs_92773 0 0 1 1 2 DOLPP1 chr9:131847797 3'AG 131847797 Downstream 19bp
chr9 131847815 131847815 1 + C T UCEC 131847812 + 131847792 131847832 41 CGCAGAATGCACCAAACAAACAACGCCAGGTTCCTGGACTT CGCAGAATGCACCAAACAAACAATGCCAGGTTCCTGGACTT < 41bp 0.730081278263172 0.523395687254166 0.4081485 0.44391286 prediction 0.413371182018011 Functional Loss - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131847812 chr9:131847815 synonymous SNV . 0 24 hm5C_associated_SNPs_92773 0 0 1 1 2 DOLPP1 chr9:131847895 5'GT 131847895 Upstream 81bp
chr11 65113812 65113812 1 + C T COAD 65113809 + 65113789 65113829 41 GAGTGCAAATGTTGCAATATCTGCGGCACCTCCGAGAATGA GAGTGCAAATGTTGCAATATCTGTGGCACCTCCGAGAATGA < 41bp 0.740950726673516 0.534269493810724 0.16675553 0.1687398 prediction 0.413362465725585 Functional Loss - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65113809 chr11:65113812 synonymous SNV . 0 24 hm5C_associated_SNPs_92776 0 0 1 0 2 DPF2 chr11:65113718 3'AG 65113718 Downstream 95bp
chr11 65113812 65113812 1 + C T COAD 65113809 + 65113789 65113829 41 GAGTGCAAATGTTGCAATATCTGCGGCACCTCCGAGAATGA GAGTGCAAATGTTGCAATATCTGTGGCACCTCCGAGAATGA < 41bp 0.740950726673516 0.534269493810724 0.16675553 0.1687398 prediction 0.413362465725585 Functional Loss - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65113809 chr11:65113812 synonymous SNV . 0 24 hm5C_associated_SNPs_92776 0 0 1 0 2 DPF2 chr11:65113830 5'GT 65113830 Upstream 19bp
chr6 7880319 7880319 1 + G A SKCM 7880316 + 7880296 7880336 41 CACATGAATGCAACCAACCACGCGATTGTGCAGACCTTGGT CACATGAATGCAACCAACCACGCAATTGTGCAGACCTTGGT < 41bp 0.801529902327629 0.594849013583955 0.5526848 0.4401389 prediction 0.413361777487348 Functional Loss - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7880316 chr6:7880319 synonymous SNV . 0 24 hm5C_associated_SNPs_92777 0 0 0 0 2 BMP6 chr6:7880224 3'AG 7880224 Downstream 96bp
chr6 7880319 7880319 1 + G A SKCM 7880316 + 7880296 7880336 41 CACATGAATGCAACCAACCACGCGATTGTGCAGACCTTGGT CACATGAATGCAACCAACCACGCAATTGTGCAGACCTTGGT < 41bp 0.801529902327629 0.594849013583955 0.5526848 0.4401389 prediction 0.413361777487348 Functional Loss - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7880316 chr6:7880319 synonymous SNV . 0 24 hm5C_associated_SNPs_92777 0 0 0 0 2 BMP6 chr6:7880334 5'GT 7880334 Upstream 16bp
chr12 11083309 11083309 1 + C T SKCM 11083306 + 11083286 11083326 41 AGATGAGGAGCGTCAGGGACCACCTTTGGGAGGACAGCAAT AGATGAGGAGCGTCAGGGACCACTTTTGGGAGGACAGCAAT < 41bp 0.714031109857332 0.507351525515579 0.5374674 0.48163244 prediction 0.413359168683506 Functional Loss - PRH2 ENSG00000134551 CDS Human protein_coding chr12:11083306 chr12:11083309 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_92778 0 0 0 0 1 PRH2 chr12:11083261 3'AG 11083261 Downstream 49bp
chr7 27194830 27194830 1 - T G LUAD 27194834 - 27194814 27194854 41 TGTCTGTTCTCAGGACCTGACAGGAAGCGGGGCCGCCAGAC TGTCTGTTCTCAGGACCTGACAGGCAGCGGGGCCGCCAGAC < 41bp 0.938711684274883 0.732034542717417 0.9033356 0.38528723 prediction 0.413354283114932 Functional Loss - HOXA7 ENSG00000122592 CDS Human protein_coding chr7:27194834 chr7:27194830 nonsynonymous SNV 0.987 5 25 hm5C_associated_SNPs_92780 0 0 0 0 1 HOXA7 chr7:27194841 3'AG 27194841 Downstream 12bp
chr19 14159850 14159850 1 + G T SARC 14159847 + 14159827 14159867 41 TGTGACCGCAGTCTCTGCTTCAGGCTTGGCCTCTGCATCCT TGTGACCGCAGTCTCTGCTTCAGTCTTGGCCTCTGCATCCT < 41bp 0.706676711957238 0.287172098225953 0.6708513 0.20878866 prediction 0.413353423914476 Functional Loss - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14159847 chr19:14159850 nonsynonymous SNV 0.018 4 24 hm5C_associated_SNPs_92781 0 0 0 0 2 IL27RA chr19:14159793 3'AG 14159793 Downstream 58bp
chr19 14159850 14159850 1 + G T SARC 14159847 + 14159827 14159867 41 TGTGACCGCAGTCTCTGCTTCAGGCTTGGCCTCTGCATCCT TGTGACCGCAGTCTCTGCTTCAGTCTTGGCCTCTGCATCCT < 41bp 0.706676711957238 0.287172098225953 0.6708513 0.20878866 prediction 0.413353423914476 Functional Loss - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14159847 chr19:14159850 nonsynonymous SNV 0.018 4 24 hm5C_associated_SNPs_92781 0 0 0 0 2 IL27RA chr19:14159894 5'GT 14159894 Upstream 45bp
chr20 35835747 35835747 1 + C T UCEC 35835744 + 35835724 35835764 41 GAGTCCCTCTCCGAAGCCTTCAGCGTGGCCTCTGCAGCTGC GAGTCCCTCTCCGAAGCCTTCAGTGTGGCCTCTGCAGCTGC < 41bp 0.755571294074381 0.548898160558362 0.3124088 0.14669296 prediction 0.413346267032039 Functional Loss - RPN2 ENSG00000118705 CDS Human protein_coding chr20:35835744 chr20:35835747 synonymous SNV . 0 24 hm5C_associated_SNPs_92782 0 0 1 0 1 RPN2 chr20:35835676 3'AG 35835676 Downstream 72bp
chr16 57597808 57597808 1 + G T LUSC 57597804 + 57597784 57597824 41 CAGCACGCCATGCAGTTCCCCGCCGAGCTGACCCGGGACGC CAGCACGCCATGCAGTTCCCCGCCTAGCTGACCCGGGACGC < 41bp 0.712313546922439 0.505643566853191 0.22980076 0.028228313 prediction 0.413339960138495 Functional Loss - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57597804 chr16:57597808 stopgain 0.664 1 25 hm5C_associated_SNPs_92784 0 0 0 0 2 ADGRG5 chr16:57597760 3'AG 57597760 Downstream 49bp
chr16 57597808 57597808 1 + G T LUSC 57597804 + 57597784 57597824 41 CAGCACGCCATGCAGTTCCCCGCCGAGCTGACCCGGGACGC CAGCACGCCATGCAGTTCCCCGCCTAGCTGACCCGGGACGC < 41bp 0.712313546922439 0.505643566853191 0.22980076 0.028228313 prediction 0.413339960138495 Functional Loss - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57597804 chr16:57597808 stopgain 0.664 1 25 hm5C_associated_SNPs_92784 0 0 0 0 2 ADGRG5 chr16:57597891 5'GT 57597891 Upstream 84bp
chr20 19977395 19977395 1 + G A KIRC 19977392 + 19977372 19977412 41 TTTCCAAGAAGAACAAGCAGCGCGACTGCTCAGCTCAGAAA TTTCCAAGAAGAACAAGCAGCGCAACTGCTCAGCTCAGAAA < 41bp 0.789667475875443 0.582998819514696 0.34957165 0.54066753 prediction 0.413337312721495 Functional Loss - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19977392 chr20:19977395 nonsynonymous SNV 0.194 0 24 hm5C_associated_SNPs_92785 0 0 0 0 2 RIN2 chr20:19977323 3'AG 19977323 Downstream 73bp
chr20 19977395 19977395 1 + G A KIRC 19977392 + 19977372 19977412 41 TTTCCAAGAAGAACAAGCAGCGCGACTGCTCAGCTCAGAAA TTTCCAAGAAGAACAAGCAGCGCAACTGCTCAGCTCAGAAA < 41bp 0.789667475875443 0.582998819514696 0.34957165 0.54066753 prediction 0.413337312721495 Functional Loss - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19977392 chr20:19977395 nonsynonymous SNV 0.194 0 24 hm5C_associated_SNPs_92785 0 0 0 0 2 RIN2 chr20:19977486 5'GT 19977486 Upstream 92bp
chr3 9965687 9965687 1 + C T SKCM 9965684 + 9965664 9965704 41 AGGTCCAGGGCCCCCCAAAACCCCGGTGGCACAAAAACCTG AGGTCCAGGGCCCCCCAAAACCCTGGTGGCACAAAAACCTG < 41bp 0.714001476701586 0.507337278823527 0.45020238 0.4254009 prediction 0.413328395756117 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9965684 chr3:9965687 nonsynonymous SNV 0.285 0 24 hm5C_associated_SNPs_92789 0 0 1 0 1 IL17RC chr3:9965704 5'GT 9965704 Upstream 18bp
chr16 2284933 2284933 1 + G A COAD 2284930 + 2284910 2284950 41 GCGGCAGCCACCACCGTCCTCACGGAAGACCCGCACACAGT GCGGCAGCCACCACCGTCCTCACAGAAGACCCGCACACAGT < 41bp 0.706663794913149 0.456895260540384 0.6375561 0.27463526 prediction 0.413327589826298 Functional Loss - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2284930 chr16:2284933 synonymous SNV . 0 24 hm5C_associated_SNPs_92791 0 0 1 0 2 E4F1 chr16:2284860 3'AG 2284860 Downstream 74bp
chr16 2284933 2284933 1 + G A COAD 2284930 + 2284910 2284950 41 GCGGCAGCCACCACCGTCCTCACGGAAGACCCGCACACAGT GCGGCAGCCACCACCGTCCTCACAGAAGACCCGCACACAGT < 41bp 0.706663794913149 0.456895260540384 0.6375561 0.27463526 prediction 0.413327589826298 Functional Loss - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2284930 chr16:2284933 synonymous SNV . 0 24 hm5C_associated_SNPs_92791 0 0 1 0 2 E4F1 chr16:2285002 5'GT 2285002 Upstream 70bp
chr1 205241040 205241040 1 + C T UCEC 205241038 + 205241018 205241058 41 GGGCGTGGAGAATGCCAACGCGCGGGCGCTGCTGGGCAAGT GGGCGTGGAGAATGCCAACGCGTGGGCGCTGCTGGGCAAGT < 41bp 0.823921985699698 0.617259400179155 0.34713903 0.31091395 prediction 0.413325171041086 Functional Loss - TMCC2 ENSG00000133069 CDS Human protein_coding chr1:205241038 chr1:205241040 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_92792 0 0 0 1 1 TMCC2 chr1:205240941 3'AG 205240941 Downstream 100bp
chr15 67984850 67984850 1 + G A UCEC 67984847 + 67984827 67984867 41 CTCCAATATGCTAGTAAACACAAGAGGACAGGTTAAGCTGT CTCCAATATGCTAGTAAACACAAAAGGACAGGTTAAGCTGT < 41bp 0.706661959179319 0.46309810311282 0.2616833 0.107702225 prediction 0.413323918358639 Functional Loss - MAP2K5 ENSG00000137764 CDS Human protein_coding chr15:67984847 chr15:67984850 nonsynonymous SNV 0.952 1 24 hm5C_associated_SNPs_92793 0 0 1 0 2 MAP2K5 chr15:67984817 3'AG 67984817 Downstream 34bp
chr15 67984850 67984850 1 + G A UCEC 67984847 + 67984827 67984867 41 CTCCAATATGCTAGTAAACACAAGAGGACAGGTTAAGCTGT CTCCAATATGCTAGTAAACACAAAAGGACAGGTTAAGCTGT < 41bp 0.706661959179319 0.46309810311282 0.2616833 0.107702225 prediction 0.413323918358639 Functional Loss - MAP2K5 ENSG00000137764 CDS Human protein_coding chr15:67984847 chr15:67984850 nonsynonymous SNV 0.952 1 24 hm5C_associated_SNPs_92793 0 0 1 0 2 MAP2K5 chr15:67984890 5'GT 67984890 Upstream 41bp
chr14 24839725 24839725 1 + G A LUAD 24839722 + 24839702 24839742 41 AGGTTCCCGGAAGGAGGTGGCTGGCATGGACTACCTGGCAG AGGTTCCCGGAAGGAGGTGGCTGACATGGACTACCTGGCAG < 41bp 0.735664718049335 0.529005203100781 0.7972338 0.62213737 prediction 0.413319029897108 Functional Loss - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24839722 chr14:24839725 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_92794 0 0 0 0 1 NFATC4 chr14:24839800 5'GT 24839800 Upstream 76bp
chr17 41061424 41061424 1 + G A SKCM 41061421 + 41061401 41061441 41 TTTTCCTCATCAAGTTGTTGCTGGAGTCCTGTCAGGTATGG TTTTCCTCATCAAGTTGTTGCTGAAGTCCTGTCAGGTATGG < 41bp 0.818094117448929 0.611438769293856 0.161437 0.06863621 prediction 0.413310696310146 Functional Loss - G6PC ENSG00000131482 CDS Human protein_coding chr17:41061421 chr17:41061424 stopgain 0.670 3 24 hm5C_associated_SNPs_92795 1 0 1 0 1 G6PC chr17:41061435 5'GT 41061435 Upstream 12bp
chr11 74914392 74914392 1 + C T rs139696725 74914389 + 74914369 74914409 41 GTGATCCACGGCAGCGCCATCGACACCACCTGTGTGCACTG GTGATCCACGGCAGCGCCATCGATACCACCTGTGTGCACTG < 41bp 0.753346718977233 0.546691468954657 0.18248469 0.25075173 prediction 0.413310500045152 Functional Loss - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74914389 chr11:74914392 synonymous SNV . 0 24 hm5C_associated_SNPs_92796 0 0 1 0 2 SLCO2B1 chr11:74914352 3'AG 74914352 Downstream 41bp
chr11 74914392 74914392 1 + C T rs139696725 74914389 + 74914369 74914409 41 GTGATCCACGGCAGCGCCATCGACACCACCTGTGTGCACTG GTGATCCACGGCAGCGCCATCGATACCACCTGTGTGCACTG < 41bp 0.753346718977233 0.546691468954657 0.18248469 0.25075173 prediction 0.413310500045152 Functional Loss - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74914389 chr11:74914392 synonymous SNV . 0 24 hm5C_associated_SNPs_92796 0 0 1 0 2 SLCO2B1 chr11:74914472 5'GT 74914472 Upstream 81bp
chr4 177083272 177083272 1 + G A rs148579014 177083269 + 177083249 177083289 41 AACTGGCAGAATGGTATTTTCAAGATGGTCGAGCAGTACTA AACTGGCAGAATGGTATTTTCAAAATGGTCGAGCAGTACTA < 41bp 0.789034340264141 0.582379836105506 0.5409421 0.2765176 prediction 0.413309008317269 Functional Loss - WDR17 ENSG00000150627 CDS Human protein_coding chr4:177083269 chr4:177083272 nonsynonymous SNV 0.753 1 24 hm5C_associated_SNPs_92797 0 0 0 0 2 WDR17 chr4:177083226 3'AG 177083226 Downstream 47bp
chr4 177083272 177083272 1 + G A rs148579014 177083269 + 177083249 177083289 41 AACTGGCAGAATGGTATTTTCAAGATGGTCGAGCAGTACTA AACTGGCAGAATGGTATTTTCAAAATGGTCGAGCAGTACTA < 41bp 0.789034340264141 0.582379836105506 0.5409421 0.2765176 prediction 0.413309008317269 Functional Loss - WDR17 ENSG00000150627 CDS Human protein_coding chr4:177083269 chr4:177083272 nonsynonymous SNV 0.753 1 24 hm5C_associated_SNPs_92797 0 0 0 0 2 WDR17 chr4:177083325 5'GT 177083325 Upstream 54bp
chrX 595471 595471 1 + C T SKCM 595469 + 595449 595489 41 CGCTGGAGCAGCTGAACGAGCTCGAGCGACTCTTCGACGAG CGCTGGAGCAGCTGAACGAGCTTGAGCGACTCTTCGACGAG < 41bp 0.872828834008495 0.666174627869992 0.24686167 0.22970101 prediction 0.413308412277005 Functional Loss - SHOX ENSG00000185960 CDS Human protein_coding chrX:595469 chrX:595471 synonymous SNV . 0 23 hm5C_associated_SNPs_92798 0 0 0 0 1 SHOX chrX:595561 5'GT 595561 Upstream 91bp
chr13 24890210 24890210 1 + C T HNSC 24890207 + 24890187 24890227 41 AACATAAACTCACAGGACACCTGCAGGCAAGGGCACCCTGG AACATAAACTCACAGGACACCTGTAGGCAAGGGCACCCTGG < 41bp 0.773806421463018 0.56715261106743 0.105973095 0.12295145 prediction 0.413307620791177 Functional Loss - C1QTNF9 ENSG00000240654 CDS Human protein_coding chr13:24890207 chr13:24890210 synonymous SNV . 0 24 hm5C_associated_SNPs_92800 0 0 0 0 2 C1QTNF9 chr13:24890120 3'AG 24890120 Downstream 91bp
chr13 24890210 24890210 1 + C T HNSC 24890207 + 24890187 24890227 41 AACATAAACTCACAGGACACCTGCAGGCAAGGGCACCCTGG AACATAAACTCACAGGACACCTGTAGGCAAGGGCACCCTGG < 41bp 0.773806421463018 0.56715261106743 0.105973095 0.12295145 prediction 0.413307620791177 Functional Loss - C1QTNF9 ENSG00000240654 CDS Human protein_coding chr13:24890207 chr13:24890210 synonymous SNV . 0 24 hm5C_associated_SNPs_92800 0 0 0 0 2 C1QTNF9 chr13:24890307 5'GT 24890307 Upstream 98bp
chr17 9559765 9559765 1 + C T COAD 9559762 + 9559742 9559782 41 CTCAGTTCCAAGGCAATTCCCAGCACGACGCCCTGGAATTC CTCAGTTCCAAGGCAATTCCCAGTACGACGCCCTGGAATTC < 41bp 0.751256168008939 0.54460253019232 0.14441171 0.12172207 prediction 0.413307275633237 Functional Loss - USP43 ENSG00000154914 CDS Human protein_coding chr17:9559762 chr17:9559765 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_92801 0 0 0 0 1 USP43 chr17:9559851 5'GT 9559851 Upstream 87bp
chr3 44692679 44692679 1 + C T rs143301932 44692676 + 44692656 44692696 41 GCATCCAGCCAACAAGTGCACTCCGAGAACATCAAAGTCTG GCATCCAGCCAACAAGTGCACTCTGAGAACATCAAAGTCTG < 41bp 0.741187745171932 0.53453888683241 0.14658731 0.094858944 prediction 0.413297716679043 Functional Loss - ZNF35 ENSG00000169981 CDS Human protein_coding chr3:44692676 chr3:44692679 synonymous SNV . 0 24 hm5C_associated_SNPs_92803 0 0 0 0 1 ZNF35 chr3:44692751 5'GT 44692751 Upstream 73bp
chr6 41318497 41318497 1 + G A COAD 41318494 + 41318474 41318514 41 ACCTGCCACCTTCAACAGGTCACGGACCTTCCCTGGACCTC ACCTGCCACCTTCAACAGGTCACAGACCTTCCCTGGACCTC < 41bp 0.8156562015817 0.609009985027897 0.15981597 0.11647439 prediction 0.413292433107608 Functional Loss - NCR2 ENSG00000096264 CDS Human protein_coding chr6:41318494 chr6:41318497 synonymous SNV . 0 24 hm5C_associated_SNPs_92805 0 0 0 0 1 NCR2 chr6:41318416 3'AG 41318416 Downstream 82bp
chr16 67418858 67418858 1 + G A HNSC 67418855 + 67418835 67418875 41 CCGGGAAAGCGCTCCTGCCTCCTGAGAAGGGTCATCATCTG CCGGGAAAGCGCTCCTGCCTCCTAAGAAGGGTCATCATCTG < 41bp 0.706645133302617 0.468525658671872 0.1293638 0.017960787 prediction 0.413290266605234 Functional Loss - LRRC36 ENSG00000159708 CDS Human protein_coding chr16:67418855 chr16:67418858 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_92806 0 0 0 0 1 LRRC36 chr16:67418773 3'AG 67418773 Downstream 86bp
chr1 227169809 227169809 1 + G C LUAD 227169808 + 227169788 227169828 41 TGCGCACGCTCTGCAAGGTGCGTGGTGCGGCACTCAAGCTG TGCGCACGCTCTGCAAGGTGCCTGGTGCGGCACTCAAGCTG < 41bp 0.70664490185879 0.374555386500568 0.42498496 0.2648502 prediction 0.41328980371758 Functional Loss - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227169808 chr1:227169809 nonsynonymous SNV 0.926 4 22 hm5C_associated_SNPs_92807 0 0 1 0 1 COQ8A chr1:227169728 3'AG 227169728 Downstream 82bp
chr3 45715900 45715900 1 + C T UCEC 45715897 + 45715877 45715917 41 TACCACGTGGAGTGTTACCACTGCGAGGTAGACCCCTCCCC TACCACGTGGAGTGTTACCACTGTGAGGTAGACCCCTCCCC < 41bp 0.753347900078287 0.546703723942523 0.19161344 0.23535213 prediction 0.413288352271528 Functional Loss - LIMD1 ENSG00000144791 CDS Human protein_coding chr3:45715897 chr3:45715900 synonymous SNV . 0 24 hm5C_associated_SNPs_92808 0 0 1 0 2 LIMD1 chr3:45715835 3'AG 45715835 Downstream 66bp
chr3 45715900 45715900 1 + C T UCEC 45715897 + 45715877 45715917 41 TACCACGTGGAGTGTTACCACTGCGAGGTAGACCCCTCCCC TACCACGTGGAGTGTTACCACTGTGAGGTAGACCCCTCCCC < 41bp 0.753347900078287 0.546703723942523 0.19161344 0.23535213 prediction 0.413288352271528 Functional Loss - LIMD1 ENSG00000144791 CDS Human protein_coding chr3:45715897 chr3:45715900 synonymous SNV . 0 24 hm5C_associated_SNPs_92808 0 0 1 0 2 LIMD1 chr3:45715903 5'GT 45715903 Upstream 4bp
chr1 26881118 26881118 1 + C T rs141051128 26881116 + 26881096 26881136 41 TGAGCAAAGAGGCCATTGACCACGAGAAGAAGGCCTATTCT TGAGCAAAGAGGCCATTGACCATGAGAAGAAGGCCTATTCT < 41bp 0.867045702305259 0.660403620494046 0.22929019 0.18011856 prediction 0.413284163622426 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26881116 chr1:26881118 synonymous SNV . 0 23 hm5C_associated_SNPs_92809 0 0 1 0 1 RPS6KA1 chr1:26881087 3'AG 26881087 Downstream 32bp
chrX 99921880 99921880 1 + G A LUAD 99921877 + 99921857 99921897 41 TGATCGCCAGGGGACACCCTCCCGGGTCTGTCAGTCCAGCC TGATCGCCAGGGGACACCCTCCCAGGTCTGTCAGTCCAGCC < 41bp 0.706636374205552 0.44670078934042 0.29021192 0.19090697 prediction 0.413272748411104 Functional Loss - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99921877 chrX:99921880 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_92812 0 0 0 0 1 SRPX2 chrX:99921930 5'GT 99921930 Upstream 51bp
chr18 47101831 47101831 1 + T C LUAD 47101830 + 47101810 47101850 41 TTTGTGGATGTCCTCCACACCTACACGCGTTCCTTCGGCTT TTTGTGGATGTCCTCCACACCCACACGCGTTCCTTCGGCTT < 41bp 0.706634648895594 0.430760734792627 0.33284217 0.12196207 prediction 0.413269297791187 Functional Loss - LIPG ENSG00000101670 CDS Human protein_coding chr18:47101830 chr18:47101831 nonsynonymous SNV 0.979 4 22 hm5C_associated_SNPs_92813 0 0 0 0 1 LIPG chr18:47101739 3'AG 47101739 Downstream 93bp
chr11 70194467 70194467 1 + C T SKCM 70194465 + 70194445 70194485 41 TCCGGGCAGTGGGCGCTCCACCCCACGAAGGATCCCTCACA TCCGGGCAGTGGGCGCTCCACCTCACGAAGGATCCCTCACA < 41bp 0.706628190036825 0.421583752159393 0.042635858 0.036753744 prediction 0.41325638007365 Functional Loss - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70194465 chr11:70194467 nonsynonymous SNV 0.866 4 23 hm5C_associated_SNPs_92818 0 0 1 0 1 PPFIA1 chr11:70194526 5'GT 70194526 Upstream 60bp
chr15 74178893 74178893 1 + G A SKCM 74178890 + 74178870 74178910 41 GCTGTGCAGTCCCTCTTCCCCTGGTTCTGCTTCTGCTTCCA GCTGTGCAGTCCCTCTTCCCCTGATTCTGCTTCTGCTTCCA < 41bp 0.822355243554805 0.615733607300649 0.21715605 0.104041785 prediction 0.413243272508312 Functional Loss - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74178890 chr15:74178893 stopgain 1.000 1 24 hm5C_associated_SNPs_92824 0 0 0 0 2 TBC1D21 chr15:74178853 3'AG 74178853 Downstream 41bp
chr15 74178893 74178893 1 + G A SKCM 74178890 + 74178870 74178910 41 GCTGTGCAGTCCCTCTTCCCCTGGTTCTGCTTCTGCTTCCA GCTGTGCAGTCCCTCTTCCCCTGATTCTGCTTCTGCTTCCA < 41bp 0.822355243554805 0.615733607300649 0.21715605 0.104041785 prediction 0.413243272508312 Functional Loss - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74178890 chr15:74178893 stopgain 1.000 1 24 hm5C_associated_SNPs_92824 0 0 0 0 2 TBC1D21 chr15:74178953 5'GT 74178953 Upstream 61bp
chr19 43858432 43858432 1 + C T COAD 43858430 + 43858410 43858450 41 AGGAGCCCCGCGTCACTGAGCACCGGATGGGCCCCGGCCTC AGGAGCCCCGCGTCACTGAGCATCGGATGGGCCCCGGCCTC < 41bp 0.836344728044141 0.629724276886847 0.28281844 0.21870598 prediction 0.413240902314587 Functional Loss - CD177 ENSG00000204936 CDS Human protein_coding chr19:43858430 chr19:43858432 synonymous SNV . 0 23 hm5C_associated_SNPs_92827 0 0 1 0 1 CD177 chr19:43858359 3'AG 43858359 Downstream 74bp
chr7 38390038 38390038 1 + G A rs181477327 38390035 + 38390015 38390055 41 ATCATGTGTGTTGGTGTGTCCCGGAGTCTGCTCTAAGGTAA ATCATGTGTGTTGGTGTGTCCCGAAGTCTGCTCTAAGGTAA < 41bp 0.783285607928979 0.576667168361848 0.35091752 0.06953764 prediction 0.413236879134262 Functional Loss - TRG-AS1 ENSG00000211697 upstream Human TR_V_gene chr7:38390035 chr7:38390038 . . 0 24 hm5C_associated_SNPs_92829 0 0 0 0 2 TRG-AS1 chr7:38389947 3'AG 38389947 Downstream 92bp
chr7 38390038 38390038 1 + G A rs181477327 38390035 + 38390015 38390055 41 ATCATGTGTGTTGGTGTGTCCCGGAGTCTGCTCTAAGGTAA ATCATGTGTGTTGGTGTGTCCCGAAGTCTGCTCTAAGGTAA < 41bp 0.783285607928979 0.576667168361848 0.35091752 0.06953764 prediction 0.413236879134262 Functional Loss - TRG-AS1 ENSG00000211697 upstream Human TR_V_gene chr7:38390035 chr7:38390038 . . 0 24 hm5C_associated_SNPs_92829 0 0 0 0 2 TRG-AS1 chr7:38390051 5'GT 38390051 Upstream 14bp
chr9 35606933 35606933 1 + C T STAD 35606930 + 35606910 35606950 41 CCCTGGACATTGCCCGAGGCCTGCGGTACCTGCACTCCAAA CCCTGGACATTGCCCGAGGCCTGTGGTACCTGCACTCCAAA < 41bp 0.73744980876202 0.530831596975125 0.84499454 0.61620134 prediction 0.41323642357379 Functional Loss - TESK1 ENSG00000107140 CDS Human protein_coding chr9:35606930 chr9:35606933 nonsynonymous SNV 0.973 4 24 hm5C_associated_SNPs_92830 0 0 1 0 2 TESK1 chr9:35606834 3'AG 35606834 Downstream 100bp
chr9 35606933 35606933 1 + C T STAD 35606930 + 35606910 35606950 41 CCCTGGACATTGCCCGAGGCCTGCGGTACCTGCACTCCAAA CCCTGGACATTGCCCGAGGCCTGTGGTACCTGCACTCCAAA < 41bp 0.73744980876202 0.530831596975125 0.84499454 0.61620134 prediction 0.41323642357379 Functional Loss - TESK1 ENSG00000107140 CDS Human protein_coding chr9:35606930 chr9:35606933 nonsynonymous SNV 0.973 4 24 hm5C_associated_SNPs_92830 0 0 1 0 2 TESK1 chr9:35606980 5'GT 35606980 Upstream 48bp
chr16 31050905 31050905 1 + C T KIRP 31050902 + 31050882 31050922 41 TGAGAAGAACATCCTGAGCTCAGCGGACTACGTGGAACGTG TGAGAAGAACATCCTGAGCTCAGTGGACTACGTGGAACGTG < 41bp 0.706618191455742 0.48900962980443 0.8862777 0.7491661 prediction 0.413236382911484 Functional Loss - STX4 ENSG00000103496 CDS Human protein_coding chr16:31050902 chr16:31050905 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_92831 0 0 1 0 2 STX4 chr16:31050862 3'AG 31050862 Downstream 44bp
chr16 31050905 31050905 1 + C T KIRP 31050902 + 31050882 31050922 41 TGAGAAGAACATCCTGAGCTCAGCGGACTACGTGGAACGTG TGAGAAGAACATCCTGAGCTCAGTGGACTACGTGGAACGTG < 41bp 0.706618191455742 0.48900962980443 0.8862777 0.7491661 prediction 0.413236382911484 Functional Loss - STX4 ENSG00000103496 CDS Human protein_coding chr16:31050902 chr16:31050905 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_92831 0 0 1 0 2 STX4 chr16:31050972 5'GT 31050972 Upstream 68bp
chr7 5920531 5920531 1 + C T COAD 5920529 + 5920509 5920549 41 AGTAGGTAGAAAATGAGCATCACGGACGTGCTCAGTGCTGA AGTAGGTAGAAAATGAGCATCATGGACGTGCTCAGTGCTGA < 41bp 0.805243463418856 0.598628049814473 0.090592444 0.16301331 prediction 0.413230827208766 Functional Loss - OCM ENSG00000122543 CDS Human protein_coding chr7:5920529 chr7:5920531 nonsynonymous SNV 0.927 3 23 hm5C_associated_SNPs_92835 0 0 0 0 1 OCM chr7:5920581 5'GT 5920581 Upstream 51bp
chr16 24366243 24366243 1 + C T BLCA 24366240 + 24366220 24366260 41 GCGTGGCAGCCAGTGAGTTCCACCGCAGCAGACACAACGTC GCGTGGCAGCCAGTGAGTTCCACTGCAGCAGACACAACGTC < 41bp 0.706611809912345 0.491203377757851 0.1796622 0.27534884 prediction 0.41322361982469 Functional Loss - CACNG3 ENSG00000006116 CDS Human protein_coding chr16:24366240 chr16:24366243 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_92840 0 0 0 0 2 CACNG3 chr16:24366154 3'AG 24366154 Downstream 90bp
chr16 24366243 24366243 1 + C T BLCA 24366240 + 24366220 24366260 41 GCGTGGCAGCCAGTGAGTTCCACCGCAGCAGACACAACGTC GCGTGGCAGCCAGTGAGTTCCACTGCAGCAGACACAACGTC < 41bp 0.706611809912345 0.491203377757851 0.1796622 0.27534884 prediction 0.41322361982469 Functional Loss - CACNG3 ENSG00000006116 CDS Human protein_coding chr16:24366240 chr16:24366243 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_92840 0 0 0 0 2 CACNG3 chr16:24366294 5'GT 24366294 Upstream 52bp
chr6 126203588 126203588 1 + G A UCEC 126203585 + 126203565 126203605 41 TCACAAGGATGCTGACTTAGCACGAAAGGCCTTGAAACCCA TCACAAGGATGCTGACTTAGCACAAAAGGCCTTGAAACCCA < 41bp 0.761102606573137 0.554492429587285 0.0933671 0.05715543 prediction 0.413220353971703 Functional Loss - NCOA7 ENSG00000111912 CDS Human protein_coding chr6:126203585 chr6:126203588 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_92842 0 0 0 0 1 NCOA7 chr6:126203572 3'AG 126203572 Downstream 17bp
chr11 134241002 134241002 1 + C T rs561326208 134241000 + 134240980 134241020 41 CTCTATGAGACCAGCATCACCTCGTCTGGCATCCTCAGTGG CTCTATGAGACCAGCATCACCTTGTCTGGCATCCTCAGTGG < 41bp 0.706607591614482 0.433696653511391 0.38166025 0.30326116 prediction 0.413215183228964 Functional Loss - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134241000 chr11:134241002 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_92844 0 0 1 0 1 GLB1L2 chr11:134241042 5'GT 134241042 Upstream 41bp
chr12 54963006 54963006 1 + G C SKCM 54963002 + 54962982 54963022 41 CGGAGGACGAGCTGCAGGAGCTGCGGTCAGATGCCGTGCCT CGGAGGACGAGCTGCAGGAGCTGCCGTCAGATGCCGTGCCT < 41bp 0.808036274259716 0.601431281959277 0.8019609 0.71315336 prediction 0.41320998460088 Functional Loss - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54963002 chr12:54963006 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_92845 0 0 0 0 1 PDE1B chr12:54962968 3'AG 54962968 Downstream 39bp
chr17 79974724 79974724 1 + C T rs147635421 79974721 + 79974701 79974741 41 GGAGCATGCCATCTCCCCATCTGCGGCCGATGTGCTGGTGG GGAGCATGCCATCTCCCCATCTGTGGCCGATGTGCTGGTGG < 41bp 0.720266049251785 0.513661716277096 0.39786834 0.33508676 prediction 0.413208665949378 Functional Loss - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79974721 chr17:79974724 nonsynonymous SNV 0.044 0 24 hm5C_associated_SNPs_92846 0 0 1 0 2 ASPSCR1 chr17:79974676 3'AG 79974676 Downstream 49bp
chr17 79974724 79974724 1 + C T rs147635421 79974721 + 79974701 79974741 41 GGAGCATGCCATCTCCCCATCTGCGGCCGATGTGCTGGTGG GGAGCATGCCATCTCCCCATCTGTGGCCGATGTGCTGGTGG < 41bp 0.720266049251785 0.513661716277096 0.39786834 0.33508676 prediction 0.413208665949378 Functional Loss - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79974721 chr17:79974724 nonsynonymous SNV 0.044 0 24 hm5C_associated_SNPs_92846 0 0 1 0 2 ASPSCR1 chr17:79974745 5'GT 79974745 Upstream 22bp
chr1 113057530 113057530 1 + G T UCEC 113057526 + 113057506 113057546 41 GCACTGGGGGCACGAGTGATCTGTGACAATATCCCTGGTTT GCACTGGGGGCACGAGTGATCTGTTACAATATCCCTGGTTT < 41bp 0.729580398596079 0.522977306465603 0.18959194 0.09750357 prediction 0.413206184260951 Functional Loss - WNT2B ENSG00000134245 CDS Human protein_coding chr1:113057526 chr1:113057530 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_92848 0 0 0 0 1 WNT2B chr1:113057496 3'AG 113057496 Downstream 35bp
chr1 146737658 146737658 1 + G T SARC 146737654 + 146737634 146737674 41 AGTGAAAGCTGAGGTAGCTACAGAGCTTCCCAAGAAGACAG AGTGAAAGCTGAGGTAGCTACAGATCTTCCCAAGAAGACAG < 41bp 0.71396751735898 0.507367644722166 0.84257865 0.72055423 prediction 0.413199745273628 Functional Loss - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146737654 chr1:146737658 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_92850 0 0 1 0 2 CHD1L chr1:146737591 3'AG 146737591 Downstream 68bp
chr1 146737658 146737658 1 + G T SARC 146737654 + 146737634 146737674 41 AGTGAAAGCTGAGGTAGCTACAGAGCTTCCCAAGAAGACAG AGTGAAAGCTGAGGTAGCTACAGATCTTCCCAAGAAGACAG < 41bp 0.71396751735898 0.507367644722166 0.84257865 0.72055423 prediction 0.413199745273628 Functional Loss - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146737654 chr1:146737658 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_92850 0 0 1 0 2 CHD1L chr1:146737746 5'GT 146737746 Upstream 89bp
chr12 67696193 67696193 1 + G T STAD 67696190 + 67696170 67696210 41 CTTGGATGCTGTAGTTAGCACAAGGCATGAAATGCTTCCAG CTTGGATGCTGTAGTTAGCACAATGCATGAAATGCTTCCAG < 41bp 0.706597396687204 0.301354627314879 0.42253307 0.23901379 prediction 0.413194793374409 Functional Loss - CAND1 ENSG00000111530 CDS Human protein_coding chr12:67696190 chr12:67696193 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_92851 0 0 1 0 1 CAND1 chr12:67696103 3'AG 67696103 Downstream 91bp
chr2 219746977 219746977 1 + C T rs146460077 219746974 + 219746954 219746994 41 TAACATTGCCAGGCCTGAGCCGGCGGCAGATGGAGGTGTGT TAACATTGCCAGGCCTGAGCCGGTGGCAGATGGAGGTGTGT < 41bp 0.706593932958573 0.492412719615481 0.9014913 0.638112 prediction 0.413187865917145 Functional Loss - WNT10A ENSG00000135925 CDS Human protein_coding chr2:219746974 chr2:219746977 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_92855 3 0 0 0 1 WNT10A chr2:219746883 3'AG 219746883 Downstream 95bp
chr1 202278220 202278220 1 + G A UCEC 202278217 + 202278197 202278237 41 GCTGACCACACTGCCCCTGGCTGGACTTGGGGGCTTGATGC GCTGACCACACTGCCCCTGGCTGAACTTGGGGGCTTGATGC < 41bp 0.757615089734471 0.551025534837442 0.14440593 0.18806496 prediction 0.413179109794057 Functional Loss - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202278217 chr1:202278220 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_92857 0 0 0 0 2 LGR6 chr1:202278179 3'AG 202278179 Downstream 42bp
chr1 202278220 202278220 1 + G A UCEC 202278217 + 202278197 202278237 41 GCTGACCACACTGCCCCTGGCTGGACTTGGGGGCTTGATGC GCTGACCACACTGCCCCTGGCTGAACTTGGGGGCTTGATGC < 41bp 0.757615089734471 0.551025534837442 0.14440593 0.18806496 prediction 0.413179109794057 Functional Loss - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202278217 chr1:202278220 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_92857 0 0 0 0 2 LGR6 chr1:202278304 5'GT 202278304 Upstream 85bp
chr5 149219665 149219665 1 + C T rs182592244 149219662 + 149219642 149219682 41 GCATCCGGCACGCCAGGAAGCGGCGGGAAAAGGCCATTGTA GCATCCGGCACGCCAGGAAGCGGTGGGAAAAGGCCATTGTA < 41bp 0.714349993254013 0.50776152641431 0.8495725 0.63029766 prediction 0.413176933679406 Functional Loss - PPARGC1B ENSG00000155846 CDS Human protein_coding chr5:149219662 chr5:149219665 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_92858 0 0 0 0 2 PPARGC1B chr5:149219604 3'AG 149219604 Downstream 62bp
chr5 149219665 149219665 1 + C T rs182592244 149219662 + 149219642 149219682 41 GCATCCGGCACGCCAGGAAGCGGCGGGAAAAGGCCATTGTA GCATCCGGCACGCCAGGAAGCGGTGGGAAAAGGCCATTGTA < 41bp 0.714349993254013 0.50776152641431 0.8495725 0.63029766 prediction 0.413176933679406 Functional Loss - PPARGC1B ENSG00000155846 CDS Human protein_coding chr5:149219662 chr5:149219665 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_92858 0 0 0 0 2 PPARGC1B chr5:149219679 5'GT 149219679 Upstream 15bp
chr6 17292047 17292047 1 + C T COAD 17292045 + 17292025 17292065 41 AGCCGGGAGTGGTCATTCCACACGTCCAGCCGACAGCAGCT AGCCGGGAGTGGTCATTCCACATGTCCAGCCGACAGCAGCT < 41bp 0.838858830141292 0.632270833677022 0.2089538 0.26916444 prediction 0.41317599292854 Functional Loss - RBM24 ENSG00000112183 CDS Human protein_coding chr6:17292045 chr6:17292047 synonymous SNV . 0 23 hm5C_associated_SNPs_92859 0 0 0 2 1 RBM24 chr6:17291987 3'AG 17291987 Downstream 61bp
chr20 45725779 45725779 1 + C T UCEC 45725777 + 45725757 45725797 41 ATTATTTTTCACTCCTTACTCACGGGGACATTTGCATCCAG ATTATTTTTCACTCCTTACTCATGGGGACATTTGCATCCAG < 41bp 0.706586996128177 0.426312784193822 0.9207497 0.9075892 prediction 0.413173992256354 Functional Loss - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45725777 chr20:45725779 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_92860 0 0 1 0 1 EYA2 chr20:45725807 5'GT 45725807 Upstream 29bp
chr12 55248938 55248938 1 + G T SARC 55248936 + 55248916 55248956 41 TGCTCCAGCTGACACGTATCCAGCTAGTGAGTCTGCACTTG TGCTCCAGCTGACACGTATCCATCTAGTGAGTCTGCACTTG < 41bp 0.706581568576654 0.361303328194347 0.29881555 0.07663345 prediction 0.413163137153309 Functional Loss - MUCL1 ENSG00000172551 CDS Human protein_coding chr12:55248936 chr12:55248938 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_92863 0 0 0 0 2 MUCL1 chr12:55248900 3'AG 55248900 Downstream 39bp
chr12 55248938 55248938 1 + G T SARC 55248936 + 55248916 55248956 41 TGCTCCAGCTGACACGTATCCAGCTAGTGAGTCTGCACTTG TGCTCCAGCTGACACGTATCCATCTAGTGAGTCTGCACTTG < 41bp 0.706581568576654 0.361303328194347 0.29881555 0.07663345 prediction 0.413163137153309 Functional Loss - MUCL1 ENSG00000172551 CDS Human protein_coding chr12:55248936 chr12:55248938 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_92863 0 0 0 0 2 MUCL1 chr12:55248941 5'GT 55248941 Upstream 4bp
chr1 47609043 47609043 1 + C T STAD 47609040 + 47609020 47609060 41 TCATGAAGAGTGCCTTCAGCCATCAGGGCAGCATCCAGGTG TCATGAAGAGTGCCTTCAGCCATTAGGGCAGCATCCAGGTG < 41bp 0.749098817893057 0.542519094299308 0.25583225 0.09449509 prediction 0.413159447187499 Functional Loss - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47609040 chr1:47609043 stopgain 0.062 0 24 hm5C_associated_SNPs_92864 0 0 0 0 1 CYP4A22 chr1:47609065 5'GT 47609065 Upstream 23bp
chr19 55598735 55598735 1 + C T STAD 55598732 + 55598712 55598752 41 TCTCGCTGCAGAAGGAGGAGCTGCGGGCGGTGAGCCCCGAG TCTCGCTGCAGAAGGAGGAGCTGTGGGCGGTGAGCCCCGAG < 41bp 0.750948935720343 0.544369564567627 0.8983909 0.8947514 prediction 0.413158742305433 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55598732 chr19:55598735 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_92865 0 0 0 0 2 EPS8L1 chr19:55598671 3'AG 55598671 Downstream 65bp
chr19 55598735 55598735 1 + C T STAD 55598732 + 55598712 55598752 41 TCTCGCTGCAGAAGGAGGAGCTGCGGGCGGTGAGCCCCGAG TCTCGCTGCAGAAGGAGGAGCTGTGGGCGGTGAGCCCCGAG < 41bp 0.750948935720343 0.544369564567627 0.8983909 0.8947514 prediction 0.413158742305433 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55598732 chr19:55598735 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_92865 0 0 0 0 2 EPS8L1 chr19:55598803 5'GT 55598803 Upstream 69bp
chr2 120712837 120712837 1 + C T STAD 120712834 + 120712814 120712854 41 TGCATCAGGATGACCATTCCCTGCGGGAGTCAATGATCCAG TGCATCAGGATGACCATTCCCTGTGGGAGTCAATGATCCAG < 41bp 0.759140162593398 0.552561552656108 0.15385076 0.097845495 prediction 0.41315721987458 Functional Loss - PTPN4 ENSG00000088179 CDS Human protein_coding chr2:120712834 chr2:120712837 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_92866 0 0 1 0 1 PTPN4 chr2:120712899 5'GT 120712899 Upstream 63bp
chr17 79686897 79686897 1 + G A HNSC 79686894 + 79686874 79686914 41 GCGCCGTGGAGACAGCGAAGCTCGGGCCTCTGGCCTTTTAC GCGCCGTGGAGACAGCGAAGCTCAGGCCTCTGGCCTTTTAC < 41bp 0.706578370153115 0.452602980387195 0.25174457 0.14020309 prediction 0.413156740306231 Functional Loss - SLC25A10 ENSG00000183048;ENSG00000262660 CDS Human other chr17:79686894 chr17:79686897 nonsynonymous SNV 0.250 5 24 hm5C_associated_SNPs_92867 0 0 1 0 2 SLC25A10 chr17:79686861 3'AG 79686861 Downstream 37bp
chr17 79686897 79686897 1 + G A HNSC 79686894 + 79686874 79686914 41 GCGCCGTGGAGACAGCGAAGCTCGGGCCTCTGGCCTTTTAC GCGCCGTGGAGACAGCGAAGCTCAGGCCTCTGGCCTTTTAC < 41bp 0.706578370153115 0.452602980387195 0.25174457 0.14020309 prediction 0.413156740306231 Functional Loss - SLC25A10 ENSG00000183048;ENSG00000262660 CDS Human other chr17:79686894 chr17:79686897 nonsynonymous SNV 0.250 5 24 hm5C_associated_SNPs_92867 0 0 1 0 2 SLC25A10 chr17:79686917 5'GT 79686917 Upstream 21bp
chr10 73115914 73115914 1 + C T rs113542201 73115911 + 73115891 73115931 41 GCATCCAGTGATGTGAGGAACAGCGCCCTGGCCTTCTTCCT GCATCCAGTGATGTGAGGAACAGTGCCCTGGCCTTCTTCCT < 41bp 0.706575476238125 0.499166777611864 0.3877402 0.39312175 prediction 0.41315095247625 Functional Loss - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73115911 chr10:73115914 synonymous SNV . 0 24 hm5C_associated_SNPs_92868 0 0 0 0 3 SLC29A3 chr10:73115838 3'AG 73115838 Downstream 77bp
chr10 73115914 73115914 1 + C T rs113542201 73115911 + 73115891 73115931 41 GCATCCAGTGATGTGAGGAACAGCGCCCTGGCCTTCTTCCT GCATCCAGTGATGTGAGGAACAGTGCCCTGGCCTTCTTCCT < 41bp 0.706575476238125 0.499166777611864 0.3877402 0.39312175 prediction 0.41315095247625 Functional Loss - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73115911 chr10:73115914 synonymous SNV . 0 24 hm5C_associated_SNPs_92868 0 0 0 0 3 SLC29A3 chr10:73116000 5'GT 73116000 Upstream 87bp
chr10 73115914 73115914 1 + C T rs113542201 73115911 + 73115891 73115931 41 GCATCCAGTGATGTGAGGAACAGCGCCCTGGCCTTCTTCCT GCATCCAGTGATGTGAGGAACAGTGCCCTGGCCTTCTTCCT < 41bp 0.706575476238125 0.499166777611864 0.3877402 0.39312175 prediction 0.41315095247625 Functional Loss - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73115911 chr10:73115914 synonymous SNV . 0 24 hm5C_associated_SNPs_92868 0 0 0 0 3 SLC29A3 chr10:73116006 5'GT 73116006 Upstream 93bp
chr1 7887272 7887272 1 + G A BLCA 7887269 + 7887249 7887289 41 GAGCCGCCAGACAGCAGCAGCTCGAACACCGGCTCTGGTCC GAGCCGCCAGACAGCAGCAGCTCAAACACCGGCTCTGGTCC < 41bp 0.833456753840766 0.626883266190322 0.51978517 0.6540164 prediction 0.413146975300888 Functional Loss - PER3 ENSG00000049246 CDS Human protein_coding chr1:7887269 chr1:7887272 synonymous SNV . 0 24 hm5C_associated_SNPs_92871 0 0 0 0 1 PER3 chr1:7887178 3'AG 7887178 Downstream 95bp
chr19 55019157 55019157 1 + C T SKCM 55019155 + 55019135 55019175 41 GAGCCAGGCACTGTGATCTCCCCGGGGAGCCATGTGACTTT GAGCCAGGCACTGTGATCTCCCTGGGGAGCCATGTGACTTT < 41bp 0.824194473760421 0.617621583890349 0.88122725 0.19881397 prediction 0.413145779740143 Functional Loss - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019155 chr19:55019157 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_92872 0 0 0 1 1 LAIR2 chr19:55019106 3'AG 55019106 Downstream 52bp
chr11 118886077 118886077 1 + G T SARC 118886073 + 118886053 118886093 41 GAGTTGGGGCCAACTTTGATCACAGCTCCAGGACCAGTGCA GAGTTGGGGCCAACTTTGATCACATCTCCAGGACCAGTGCA < 41bp 0.717827190698862 0.511255496794693 0.4175219 0.16721329 prediction 0.413143387808339 Functional Loss - CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118886073 chr11:118886077 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_92874 0 0 1 2 3 CCDC84 chr11:118885998 3'AG 118885998 Downstream 80bp
chr11 118886077 118886077 1 + G T SARC 118886073 + 118886053 118886093 41 GAGTTGGGGCCAACTTTGATCACAGCTCCAGGACCAGTGCA GAGTTGGGGCCAACTTTGATCACATCTCCAGGACCAGTGCA < 41bp 0.717827190698862 0.511255496794693 0.4175219 0.16721329 prediction 0.413143387808339 Functional Loss - CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118886073 chr11:118886077 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_92874 0 0 1 2 3 CCDC84 chr11:118886017 3'AG 118886017 Downstream 61bp
chr11 118886077 118886077 1 + G T SARC 118886073 + 118886053 118886093 41 GAGTTGGGGCCAACTTTGATCACAGCTCCAGGACCAGTGCA GAGTTGGGGCCAACTTTGATCACATCTCCAGGACCAGTGCA < 41bp 0.717827190698862 0.511255496794693 0.4175219 0.16721329 prediction 0.413143387808339 Functional Loss - CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118886073 chr11:118886077 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_92874 0 0 1 2 3 CCDC84 chr11:118886149 5'GT 118886149 Upstream 73bp
chr19 50149816 50149816 1 + G T LUAD 50149812 + 50149792 50149832 41 ATGGCCACGGACAGCTTCCTCGCAGGGCTGGTGAGTGTCCT ATGGCCACGGACAGCTTCCTCGCATGGCTGGTGAGTGTCCT < 41bp 0.707331843560976 0.500764959227103 0.68714356 0.3827057 prediction 0.413133768667746 Functional Loss - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50149812 chr19:50149816 nonsynonymous SNV 0.572 3 25 hm5C_associated_SNPs_92879 0 0 1 0 2 SCAF1 chr19:50149783 3'AG 50149783 Downstream 34bp
chr19 50149816 50149816 1 + G T LUAD 50149812 + 50149792 50149832 41 ATGGCCACGGACAGCTTCCTCGCAGGGCTGGTGAGTGTCCT ATGGCCACGGACAGCTTCCTCGCATGGCTGGTGAGTGTCCT < 41bp 0.707331843560976 0.500764959227103 0.68714356 0.3827057 prediction 0.413133768667746 Functional Loss - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50149812 chr19:50149816 nonsynonymous SNV 0.572 3 25 hm5C_associated_SNPs_92879 0 0 1 0 2 SCAF1 chr19:50149883 5'GT 50149883 Upstream 68bp
chr15 90170247 90170247 1 + C T SKCM 90170245 + 90170225 90170265 41 TCTCCTTTCAGTCGCGCTTTCTCCAGGAGGCGCCCCATCAG TCTCCTTTCAGTCGCGCTTTCTTCAGGAGGCGCCCCATCAG < 41bp 0.871821018529958 0.665257580564496 0.94572496 0.28602093 prediction 0.413126875930924 Functional Loss - TICRR ENSG00000140534 CDS Human protein_coding chr15:90170245 chr15:90170247 nonsynonymous SNV 0.784 2 23 hm5C_associated_SNPs_92882 0 0 1 0 1 TICRR chr15:90170187 3'AG 90170187 Downstream 61bp
chr1 22925500 22925500 1 + G A COAD 22925497 + 22925477 22925517 41 GGTGTCTGACTTCGGGCTCTCACGGGTGCTGGAGGACGACC GGTGTCTGACTTCGGGCTCTCACAGGTGCTGGAGGACGACC < 41bp 0.816479110671544 0.609918969508554 0.89557886 0.49970832 prediction 0.41312028232598 Functional Loss - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22925497 chr1:22925500 nonsynonymous SNV 0.971 5 24 hm5C_associated_SNPs_92885 0 0 0 0 1 EPHA8 chr1:22925540 5'GT 22925540 Upstream 41bp
chr16 5058649 5058649 1 + G T UCEC 5058646 + 5058626 5058666 41 TGCCGGGAGGGGGAGAGCATCCAGGTTTGCATTTTCTGGAC TGCCGGGAGGGGGAGAGCATCCATGTTTGCATTTTCTGGAC < 41bp 0.706558967094949 0.30248649105016 0.8967097 0.38216275 prediction 0.413117934189899 Functional Loss - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5058646 chr16:5058649 nonsynonymous SNV 0.940 1 24 hm5C_associated_SNPs_92888 0 0 0 0 1 SEC14L5 chr16:5058649 5'GT 5058649 Upstream 1bp
chr20 62663340 62663340 1 + G A rs139156198 62663337 + 62663317 62663357 41 CACCGCACTGTGAAGATTGACTCGGACCTGGGGGATGCCTG CACCGCACTGTGAAGATTGACTCAGACCTGGGGGATGCCTG < 41bp 0.70655202246805 0.469167552528733 0.22078764 0.06494856 prediction 0.4131040449361 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62663337 chr20:62663340 synonymous SNV . 0 24 hm5C_associated_SNPs_92892 0 0 1 0 2 PRPF6 chr20:62663271 3'AG 62663271 Downstream 70bp
chr20 62663340 62663340 1 + G A rs139156198 62663337 + 62663317 62663357 41 CACCGCACTGTGAAGATTGACTCGGACCTGGGGGATGCCTG CACCGCACTGTGAAGATTGACTCAGACCTGGGGGATGCCTG < 41bp 0.70655202246805 0.469167552528733 0.22078764 0.06494856 prediction 0.4131040449361 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62663337 chr20:62663340 synonymous SNV . 0 24 hm5C_associated_SNPs_92892 0 0 1 0 2 PRPF6 chr20:62663397 5'GT 62663397 Upstream 58bp
chr5 81608619 81608619 1 + C T UCEC 81608616 + 81608596 81608636 41 GACCAGGCCCTCTTGCTGCCCAGCGACACGGATGATGGGTC GACCAGGCCCTCTTGCTGCCCAGTGACACGGATGATGGGTC < 41bp 0.748237721234248 0.541687621825215 0.24918664 0.22575873 prediction 0.413100198818065 Functional Loss - ATP6AP1L ENSG00000205464 CDS Human protein_coding chr5:81608616 chr5:81608619 synonymous SNV . 0 24 hm5C_associated_SNPs_92894 0 0 0 0 1 ATP6AP1L chr5:81608670 5'GT 81608670 Upstream 52bp
chr9 131038597 131038597 1 + G T UCEC 131038593 + 131038573 131038613 41 GAGTTCCTGGCCCGGTGCACCTGAGAGGTCGCTCTCCGACT GAGTTCCTGGCCCGGTGCACCTGATAGGTCGCTCTCCGACT < 41bp 0.744497359247493 0.53795162280627 0.72556865 0.40091294 prediction 0.413091472882447 Functional Loss - SWI5 ENSG00000175854 CDS Human protein_coding chr9:131038593 chr9:131038597 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_92898 0 0 1 0 1 SWI5 chr9:131038681 5'GT 131038681 Upstream 85bp
chr1 158152850 158152850 1 + C T BRCA 158152847 + 158152827 158152867 41 ATGCTGACGAGACATGGTATCTCCGAGCAACCCTGGATGTG ATGCTGACGAGACATGGTATCTCTGAGCAACCCTGGATGTG < 41bp 0.706544713078039 0.479335241197207 0.3488476 0.11851174 prediction 0.413089426156077 Functional Loss - CD1D ENSG00000158473 CDS Human protein_coding chr1:158152847 chr1:158152850 stopgain 0.438 0 24 hm5C_associated_SNPs_92899 0 0 0 0 1 CD1D chr1:158152946 5'GT 158152946 Upstream 97bp
chr10 101716893 101716893 1 - C T UCEC 101716896 - 101716876 101716916 41 GGGCCGAAGCTGCTGGGGCGCACGGGGCTTCTTCCCATCTT GGGCCGAAGCTGCTGGGGCGCACAGGGCTTCTTCCCATCTT < 41bp 0.811271439540787 0.604730988570133 0.9135636 0.46738395 prediction 0.413080901941308 Functional Loss - DNMBP ENSG00000107554 CDS Human protein_coding chr10:101716896 chr10:101716893 nonsynonymous SNV 0.755 1 24 hm5C_associated_SNPs_92901 0 0 0 0 1 DNMBP chr10:101716962 3'AG 101716962 Downstream 70bp
chr8 121457818 121457818 1 + G T UCEC 121457814 + 121457794 121457834 41 GGTGTCGTCGGGTGAGGGTACTGAGAATCAGCCGGGTAAGC GGTGTCGTCGGGTGAGGGTACTGATAATCAGCCGGGTAAGC < 41bp 0.72316206029042 0.51662276606976 0.86410964 0.3174277 prediction 0.41307858844132 Functional Loss - MTBP ENSG00000172167 CDS Human protein_coding chr8:121457814 chr8:121457818 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_92902 0 0 1 0 1 MTBP chr8:121457828 5'GT 121457828 Upstream 11bp
chr8 24357708 24357708 1 + C T SKCM 24357706 + 24357686 24357726 41 TCCAGGTGGATGGCCACGGACTCCAGTGCCACTGTGAGGAA TCCAGGTGGATGGCCACGGACTTCAGTGCCACTGTGAGGAA < 41bp 0.88232332701302 0.675784996732999 0.9393207 0.16661751 prediction 0.413076660560041 Functional Loss - ADAM7 ENSG00000069206 CDS Human protein_coding chr8:24357706 chr8:24357708 synonymous SNV . 0 23 hm5C_associated_SNPs_92903 0 0 0 0 2 ADAM7 chr8:24357691 3'AG 24357691 Downstream 18bp
chr8 24357708 24357708 1 + C T SKCM 24357706 + 24357686 24357726 41 TCCAGGTGGATGGCCACGGACTCCAGTGCCACTGTGAGGAA TCCAGGTGGATGGCCACGGACTTCAGTGCCACTGTGAGGAA < 41bp 0.88232332701302 0.675784996732999 0.9393207 0.16661751 prediction 0.413076660560041 Functional Loss - ADAM7 ENSG00000069206 CDS Human protein_coding chr8:24357706 chr8:24357708 synonymous SNV . 0 23 hm5C_associated_SNPs_92903 0 0 0 0 2 ADAM7 chr8:24357769 5'GT 24357769 Upstream 62bp
chrX 47986614 47986614 1 + G A rs4065039 47986611 + 47986591 47986631 41 TTGAACTTGGAGGGCAGCAACAGGGTTGCAGGTGTAAAATA TTGAACTTGGAGGGCAGCAACAGAGTTGCAGGTGTAAAATA < 41bp 0.807998353090348 0.601461773638729 0.89915085 0.5666155 prediction 0.413073158903239 Functional Loss - SPACA5 ENSG00000171483;ENSG00000171478 intergenic Human other chrX:47986611 chrX:47986614 . . 0 24 hm5C_associated_SNPs_92904 0 0 0 0 1 SPACA5 chrX:47986684 5'GT 47986684 Upstream 71bp
chr21 30566498 30566498 1 + G A rs61730440 30566495 + 30566475 30566515 41 CAATGACTATCTGGATGACACAGGAAGGATGCAATTCTGGC CAATGACTATCTGGATGACACAGAAAGGATGCAATTCTGGC < 41bp 0.732404155853642 0.52586869934978 0.23105356 0.16324633 prediction 0.413070913007724 Functional Loss - LINC00189 ENSG00000215533 ncRNA_exonic Human other chr21:30566495 chr21:30566498 . . 0 24 hm5C_associated_SNPs_92907 0 0 0 2 2 LINC00189 chr21:30566436 3'AG 30566436 Downstream 63bp
chr21 30566498 30566498 1 + G A rs61730440 30566495 + 30566475 30566515 41 CAATGACTATCTGGATGACACAGGAAGGATGCAATTCTGGC CAATGACTATCTGGATGACACAGAAAGGATGCAATTCTGGC < 41bp 0.732404155853642 0.52586869934978 0.23105356 0.16324633 prediction 0.413070913007724 Functional Loss - LINC00189 ENSG00000215533 ncRNA_exonic Human sense_overlapping chr21:30566495 chr21:30566498 . . 0 24 hm5C_associated_SNPs_92907 0 0 0 2 2 LINC00189 chr21:30566581 5'GT 30566581 Upstream 84bp
chr19 36257779 36257779 1 + C T CESC 36257776 + 36257756 36257796 41 TTCTGTACCAGTGGCGGCAGCGGCGGAAGCTTGAACAGGCT TTCTGTACCAGTGGCGGCAGCGGTGGAAGCTTGAACAGGCT < 41bp 0.770959836132135 0.564425317648158 0.8792794 0.75090533 prediction 0.413069036967953 Functional Loss - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36257776 chr19:36257779 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_92909 0 0 1 0 1 PROSER3 chr19:36257856 5'GT 36257856 Upstream 78bp
chr1 44257803 44257803 1 + G T LUAD 44257800 + 44257780 44257820 41 GGTTCTTTCCTTTGACTCCGCTGGACAAACACTAGGCTCAG GGTTCTTTCCTTTGACTCCGCTGTACAAACACTAGGCTCAG < 41bp 0.706533278626246 0.372171534248144 0.19404337 0.112647116 prediction 0.413066557252493 Functional Loss - ST3GAL3 ENSG00000126091 CDS Human protein_coding chr1:44257800 chr1:44257803 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_92911 0 0 0 0 2 ST3GAL3 chr1:44257773 3'AG 44257773 Downstream 31bp
chr1 44257803 44257803 1 + G T LUAD 44257800 + 44257780 44257820 41 GGTTCTTTCCTTTGACTCCGCTGGACAAACACTAGGCTCAG GGTTCTTTCCTTTGACTCCGCTGTACAAACACTAGGCTCAG < 41bp 0.706533278626246 0.372171534248144 0.19404337 0.112647116 prediction 0.413066557252493 Functional Loss - ST3GAL3 ENSG00000126091 CDS Human protein_coding chr1:44257800 chr1:44257803 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_92911 0 0 0 0 2 ST3GAL3 chr1:44257820 5'GT 44257820 Upstream 18bp
chr1 55145630 55145630 1 + G A SKCM 55145627 + 55145607 55145647 41 TCCAGGAGCCTCGGGCCCGCCAGGTGGCCCTGCTGCCCGTC TCCAGGAGCCTCGGGCCCGCCAGATGGCCCTGCTGCCCGTC < 41bp 0.824471274300768 0.617942452306748 0.93869185 0.93150115 prediction 0.41305764398804 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55145627 chr1:55145630 nonsynonymous SNV 0.937 1 24 hm5C_associated_SNPs_92917 0 0 0 0 2 MROH7 chr1:55145564 3'AG 55145564 Downstream 67bp
chr1 55145630 55145630 1 + G A SKCM 55145627 + 55145607 55145647 41 TCCAGGAGCCTCGGGCCCGCCAGGTGGCCCTGCTGCCCGTC TCCAGGAGCCTCGGGCCCGCCAGATGGCCCTGCTGCCCGTC < 41bp 0.824471274300768 0.617942452306748 0.93869185 0.93150115 prediction 0.41305764398804 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55145627 chr1:55145630 nonsynonymous SNV 0.937 1 24 hm5C_associated_SNPs_92917 0 0 0 0 2 MROH7 chr1:55145718 5'GT 55145718 Upstream 89bp
chr1 44450677 44450677 1 + C T LUAD 44450674 + 44450654 44450694 41 GATGACCGCAACCTATACCGCTGCGGCGACCAACCCCGCCA GATGACCGCAACCTATACCGCTGTGGCGACCAACCCCGCCA < 41bp 0.747493469061691 0.540965929380411 0.29535818 0.28038692 prediction 0.41305507936256 Functional Loss - B4GALT2 ENSG00000117411 CDS Human protein_coding chr1:44450674 chr1:44450677 synonymous SNV . 0 24 hm5C_associated_SNPs_92918 0 0 0 0 1 B4GALT2 chr1:44450727 5'GT 44450727 Upstream 51bp
chr5 917151 917151 1 + T C LIHC 917150 + 917130 917170 41 CCGTCACCATAGAGGGGTTCCTCCAGGCCCTGTCTCTGGCA CCGTCACCATAGAGGGGTTCCCCCAGGCCCTGTCTCTGGCA < 41bp 0.85329902273927 0.646772325471506 0.9674017 0.34520942 prediction 0.413053394535528 Functional Loss - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:917150 chr5:917151 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_92920 0 0 1 0 1 TRIP13 chr5:917123 3'AG 917123 Downstream 29bp
chr19 51981811 51981811 1 + G T LUSC 51981807 + 51981787 51981827 41 GGAGACGAGACCGGCAGCCTCTGTGCCAGGAGACACAGGTC GGAGACGAGACCGGCAGCCTCTGTTCCAGGAGACACAGGTC < 41bp 0.706523882212594 0.485139695510816 0.5816568 0.31538507 prediction 0.413047764425189 Functional Loss - CEACAM18 ENSG00000213822 CDS Human protein_coding chr19:51981807 chr19:51981811 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_92923 0 0 0 0 1 CEACAM18 chr19:51981730 3'AG 51981730 Downstream 82bp
chr8 9564436 9564436 1 + C T STAD 9564433 + 9564413 9564453 41 ACTTAGCCATGGCGCTGATCCTACATTAGTCAACTGCCATG ACTTAGCCATGGCGCTGATCCTATATTAGTCAACTGCCATG < 41bp 0.706517981489184 0.479340881681256 0.89928925 0.8294276 prediction 0.413035962978367 Functional Loss - TNKS ENSG00000173273 CDS Human protein_coding chr8:9564433 chr8:9564436 nonsynonymous SNV 0.203 4 24 hm5C_associated_SNPs_92926 0 0 1 0 1 TNKS chr8:9564507 5'GT 9564507 Upstream 72bp
chr20 2380227 2380227 1 + A T THCA 2380225 + 2380205 2380245 41 AGGTGAACAGCAACAACGACCGAGGTGTGGTGCAAGGACAG AGGTGAACAGCAACAACGACCGTGGTGTGGTGCAAGGACAG < 41bp 0.721933409432838 0.515417979115746 0.8869877 0.78392154 prediction 0.413030860634184 Functional Loss - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2380225 chr20:2380227 synonymous SNV . 0 23 hm5C_associated_SNPs_92927 0 0 0 0 1 TGM6 chr20:2380207 3'AG 2380207 Downstream 21bp
chr16 56704428 56704428 1 + C T UCEC 56704425 + 56704405 56704445 41 CTATTCCTTGCAGGTGGCTCCTGCGCCTGCGCCGGCTCCTG CTATTCCTTGCAGGTGGCTCCTGTGCCTGCGCCGGCTCCTG < 41bp 0.736496804034695 0.529983509270135 0.4343355 0.43004256 prediction 0.41302658952912 Functional Loss - MT1H ENSG00000205358 CDS Human protein_coding chr16:56704425 chr16:56704428 synonymous SNV . 0 24 hm5C_associated_SNPs_92929 0 0 0 0 1 MT1H chr16:56704418 3'AG 56704418 Downstream 11bp
chr1 12164485 12164485 1 + C T UCEC 12164482 + 12164462 12164502 41 GCATGGAACTCCTCCCGTGTCTGCGAATGTCGACCCGGCAT GCATGGAACTCCTCCCGTGTCTGTGAATGTCGACCCGGCAT < 41bp 0.75000238841721 0.54348975083038 0.16200075 0.051475465 prediction 0.413025275173661 Functional Loss - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12164482 chr1:12164485 synonymous SNV . 0 24 hm5C_associated_SNPs_92930 0 0 0 0 1 TNFRSF8 chr1:12164436 3'AG 12164436 Downstream 50bp
chrX 14627266 14627266 1 + G T LUAD 14627262 + 14627242 14627282 41 CAGCCCCTGCCAGGGTCGCACTGGGCATCACCACAGTCTTA CAGCCCCTGCCAGGGTCGCACTGGTCATCACCACAGTCTTA < 41bp 0.738029274662151 0.531516795964758 0.6873063 0.27788323 prediction 0.413024957394787 Functional Loss - GLRA2 ENSG00000101958 CDS Human protein_coding chrX:14627262 chrX:14627266 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_92931 0 0 0 0 1 GLRA2 chrX:14627327 5'GT 14627327 Upstream 62bp
chr11 44089249 44089249 1 + G T LGG 44089247 + 44089227 44089267 41 GCCCCACCTGCATGCAGGACCTGGGCAGTAGCCATGGGGAA GCCCCACCTGCATGCAGGACCTTGGCAGTAGCCATGGGGAA < 41bp 0.706511856482116 0.436629014275507 0.39068907 0.28638732 prediction 0.413023712964232 Functional Loss - ACCS ENSG00000110455 CDS Human protein_coding chr11:44089247 chr11:44089249 synonymous SNV . 0 23 hm5C_associated_SNPs_92932 0 0 0 0 2 ACCS chr11:44089178 3'AG 44089178 Downstream 72bp
chr11 44089249 44089249 1 + G T LGG 44089247 + 44089227 44089267 41 GCCCCACCTGCATGCAGGACCTGGGCAGTAGCCATGGGGAA GCCCCACCTGCATGCAGGACCTTGGCAGTAGCCATGGGGAA < 41bp 0.706511856482116 0.436629014275507 0.39068907 0.28638732 prediction 0.413023712964232 Functional Loss - ACCS ENSG00000110455 CDS Human protein_coding chr11:44089247 chr11:44089249 synonymous SNV . 0 23 hm5C_associated_SNPs_92932 0 0 0 0 2 ACCS chr11:44089328 5'GT 44089328 Upstream 80bp
chr3 186571010 186571010 1 - C T rs138227502 186571013 - 186570993 186571033 41 AGGGGTGCCATCTCTGCCATCACGGCCTGGGGCCCCATTAT AGGGGTGCCATCTCTGCCATCACAGCCTGGGGCCCCATTAT < 41bp 0.820970813709419 0.614463598082334 0.5087771 0.22325212 prediction 0.413014431254172 Functional Loss - ADIPOQ ENSG00000181092 CDS Human protein_coding chr3:186571013 chr3:186571010 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_92936 0 0 0 0 1 ADIPOQ chr3:186571031 3'AG 186571031 Downstream 22bp
chr16 19191783 19191783 1 + C T LUSC 19191781 + 19191761 19191801 41 CAGCGAAGTCCCGCTGACCCCACGGACCAATTCCCCGGATG CAGCGAAGTCCCGCTGACCCCATGGACCAATTCCCCGGATG < 41bp 0.859594790761618 0.65309188780902 0.7820069 0.5031066 prediction 0.413005805905195 Functional Loss - SYT17 ENSG00000103528 CDS Human protein_coding chr16:19191781 chr16:19191783 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_92938 0 0 0 0 2 SYT17 chr16:19191713 3'AG 19191713 Downstream 71bp
chr16 19191783 19191783 1 + C T LUSC 19191781 + 19191761 19191801 41 CAGCGAAGTCCCGCTGACCCCACGGACCAATTCCCCGGATG CAGCGAAGTCCCGCTGACCCCATGGACCAATTCCCCGGATG < 41bp 0.859594790761618 0.65309188780902 0.7820069 0.5031066 prediction 0.413005805905195 Functional Loss - SYT17 ENSG00000103528 CDS Human protein_coding chr16:19191781 chr16:19191783 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_92938 0 0 0 0 2 SYT17 chr16:19191861 5'GT 19191861 Upstream 79bp
chr20 42694464 42694464 1 + C T UCEC 42694461 + 42694441 42694481 41 AGGCCTGGCCTCCTTCCTGACGCCGTCGGACCTGCAGGCCT AGGCCTGGCCTCCTTCCTGACGCTGTCGGACCTGCAGGCCT < 41bp 0.763422643883768 0.556922966692477 0.3522849 0.13499874 prediction 0.412999354382582 Functional Loss - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42694461 chr20:42694464 nonsynonymous SNV 0.978 2 24 hm5C_associated_SNPs_92940 0 0 0 0 1 TOX2 chr20:42694550 5'GT 42694550 Upstream 87bp
chr2 127447880 127447880 1 + C T rs191646209 127447877 + 127447857 127447897 41 TCCACCACAATGCATACTACCACCATTGCAGGTGAGTTCTC TCCACCACAATGCATACTACCACTATTGCAGGTGAGTTCTC < 41bp 0.73078050903095 0.52428218674192 0.03725046 0.024142921 prediction 0.41299664457806 Functional Loss - GYPC ENSG00000136732 CDS Human protein_coding chr2:127447877 chr2:127447880 synonymous SNV . 0 24 hm5C_associated_SNPs_92942 0 0 1 0 2 GYPC chr2:127447831 3'AG 127447831 Downstream 50bp
chr2 127447880 127447880 1 + C T rs191646209 127447877 + 127447857 127447897 41 TCCACCACAATGCATACTACCACCATTGCAGGTGAGTTCTC TCCACCACAATGCATACTACCACTATTGCAGGTGAGTTCTC < 41bp 0.73078050903095 0.52428218674192 0.03725046 0.024142921 prediction 0.41299664457806 Functional Loss - GYPC ENSG00000136732 CDS Human protein_coding chr2:127447877 chr2:127447880 synonymous SNV . 0 24 hm5C_associated_SNPs_92942 0 0 1 0 2 GYPC chr2:127447887 5'GT 127447887 Upstream 8bp
chr1 153617620 153617620 1 + C T UCEC 153617618 + 153617598 153617638 41 ACGAGGGAGAGGTGCCCTTGCTCGCCCTGTATTGACCAAGG ACGAGGGAGAGGTGCCCTTGCTTGCCCTGTATTGACCAAGG < 41bp 0.706497969175587 0.43105723284175 0.0923779 0.09752253 prediction 0.412995938351175 Functional Loss - CHTOP ENSG00000160679 CDS Human protein_coding chr1:153617618 chr1:153617620 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_92944 0 0 1 0 1 CHTOP chr1:153617540 3'AG 153617540 Downstream 81bp
chr2 132290593 132290593 1 + G A HNSC 132290590 + 132290570 132290610 41 CTCTTCCTTCACCCAGGGACCAAGAAGCCACGCATTTCCCC CTCTTCCTTCACCCAGGGACCAAAAAGCCACGCATTTCCCC < 41bp 0.706494674483357 0.459122160972954 0.30615228 0.13087675 prediction 0.412989348966714 Functional Loss - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132290590 chr2:132290593 nonsynonymous SNV 0.570 1 24 hm5C_associated_SNPs_92945 0 0 0 0 2 CCDC74A chr2:132290586 3'AG 132290586 Downstream 8bp
chr2 132290593 132290593 1 + G A HNSC 132290590 + 132290570 132290610 41 CTCTTCCTTCACCCAGGGACCAAGAAGCCACGCATTTCCCC CTCTTCCTTCACCCAGGGACCAAAAAGCCACGCATTTCCCC < 41bp 0.706494674483357 0.459122160972954 0.30615228 0.13087675 prediction 0.412989348966714 Functional Loss - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132290590 chr2:132290593 nonsynonymous SNV 0.570 1 24 hm5C_associated_SNPs_92945 0 0 0 0 2 CCDC74A chr2:132290642 5'GT 132290642 Upstream 50bp
chr19 56696615 56696615 1 + G A SKCM 56696612 + 56696592 56696632 41 ATGCTCAGCATGAAAATTCCCAAGGAGGAAGATGTCCTGAA ATGCTCAGCATGAAAATTCCCAAAGAGGAAGATGTCCTGAA < 41bp 0.77608773149624 0.569594177803796 0.4013116 0.20197773 prediction 0.412987107384887 Functional Loss - GALP ENSG00000197487 CDS Human protein_coding chr19:56696612 chr19:56696615 synonymous SNV . 0 24 hm5C_associated_SNPs_92946 0 0 0 0 1 GALP chr19:56696584 3'AG 56696584 Downstream 32bp
chr4 1326630 1326630 1 + G A UCEC 1326627 + 1326607 1326647 41 TGGGCATGCTGGCCTTCCCGCCCGACACGCACATCTCCCCG TGGGCATGCTGGCCTTCCCGCCCAACACGCACATCTCCCCG < 41bp 0.819885071822566 0.613392643660329 0.026881576 0.03608212 prediction 0.412984856324475 Functional Loss - MAEA ENSG00000090316 CDS Human protein_coding chr4:1326627 chr4:1326630 nonsynonymous SNV 0.856 1 24 hm5C_associated_SNPs_92948 0 0 0 1 2 MAEA chr4:1326545 3'AG 1326545 Downstream 86bp
chr4 1326630 1326630 1 + G A UCEC 1326627 + 1326607 1326647 41 TGGGCATGCTGGCCTTCCCGCCCGACACGCACATCTCCCCG TGGGCATGCTGGCCTTCCCGCCCAACACGCACATCTCCCCG < 41bp 0.819885071822566 0.613392643660329 0.026881576 0.03608212 prediction 0.412984856324475 Functional Loss - MAEA ENSG00000090316 CDS Human protein_coding chr4:1326627 chr4:1326630 nonsynonymous SNV 0.856 1 24 hm5C_associated_SNPs_92948 0 0 0 1 2 MAEA chr4:1326653 5'GT 1326653 Upstream 24bp
chr19 22836767 22836767 1 + G T LUAD 22836763 + 22836743 22836783 41 ACCTGATCACCTGTCTGGAGCAAGGAAAAGAACCTTGGAAT ACCTGATCACCTGTCTGGAGCAAGTAAAAGAACCTTGGAAT < 41bp 0.709870392317321 0.503379948845973 0.9242104 0.91689765 prediction 0.412980886942696 Functional Loss - ZNF492 ENSG00000229676 CDS Human protein_coding chr19:22836763 chr19:22836767 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_92951 0 0 0 0 2 ZNF492 chr19:22836722 3'AG 22836722 Downstream 46bp
chr19 22836767 22836767 1 + G T LUAD 22836763 + 22836743 22836783 41 ACCTGATCACCTGTCTGGAGCAAGGAAAAGAACCTTGGAAT ACCTGATCACCTGTCTGGAGCAAGTAAAAGAACCTTGGAAT < 41bp 0.709870392317321 0.503379948845973 0.9242104 0.91689765 prediction 0.412980886942696 Functional Loss - ZNF492 ENSG00000229676 CDS Human protein_coding chr19:22836763 chr19:22836767 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_92951 0 0 0 0 2 ZNF492 chr19:22836817 5'GT 22836817 Upstream 51bp
chr20 36995470 36995470 1 + C T GBM 36995468 + 36995448 36995488 41 GTCCTTCCGACCCTTCGTCCCACGGGTAAGGAGTCCCTTAG GTCCTTCCGACCCTTCGTCCCATGGGTAAGGAGTCCCTTAG < 41bp 0.845360778577535 0.638876470530611 0.45712194 0.4995582 prediction 0.412968616093849 Functional Loss - LBP ENSG00000129988 CDS Human protein_coding chr20:36995468 chr20:36995470 nonsynonymous SNV 0.022 2 23 hm5C_associated_SNPs_92952 0 0 0 0 2 LBP chr20:36995413 3'AG 36995413 Downstream 58bp
chr20 36995470 36995470 1 + C T GBM 36995468 + 36995448 36995488 41 GTCCTTCCGACCCTTCGTCCCACGGGTAAGGAGTCCCTTAG GTCCTTCCGACCCTTCGTCCCATGGGTAAGGAGTCCCTTAG < 41bp 0.845360778577535 0.638876470530611 0.45712194 0.4995582 prediction 0.412968616093849 Functional Loss - LBP ENSG00000129988 CDS Human protein_coding chr20:36995468 chr20:36995470 nonsynonymous SNV 0.022 2 23 hm5C_associated_SNPs_92952 0 0 0 0 2 LBP chr20:36995472 5'GT 36995472 Upstream 3bp
chr4 158254082 158254082 1 + G T STAD 158254079 + 158254059 158254099 41 GGGGGAATGCAGGAGACTGTCTGGCAAACCCAGCAGTGCCC GGGGGAATGCAGGAGACTGTCTGTCAAACCCAGCAGTGCCC < 41bp 0.70647924420666 0.336444771076114 0.40496257 0.13902348 prediction 0.41295848841332 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158254079 chr4:158254082 nonsynonymous SNV 0.967 2 24 hm5C_associated_SNPs_92957 0 0 0 0 1 GRIA2 chr4:158254138 5'GT 158254138 Upstream 57bp
chr16 1823473 1823473 1 + C T SKCM 1823471 + 1823451 1823491 41 CGCCTCGCGGTGTGCGTGGACACAGGTGCGGCGGAGGGCAC CGCCTCGCGGTGTGCGTGGACATAGGTGCGGCGGAGGGCAC < 41bp 0.777175259602469 0.570701009514669 0.8264849 0.86372507 prediction 0.412948500175599 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1823471 chr16:1823473 nonsynonymous SNV 0.979 1 23 hm5C_associated_SNPs_92959 0 0 1 0 1 EME2 chr16:1823475 5'GT 1823475 Upstream 3bp
chr18 51820107 51820107 1 + G A rs147885622 51820104 + 51820084 51820124 41 AAGTGGAAGAATTGAAAGTACAAGAACTAGGGAGTCTCCAC AAGTGGAAGAATTGAAAGTACAAAAACTAGGGAGTCTCCAC < 41bp 0.706472891526201 0.486639740279482 0.28273952 0.15982208 prediction 0.412945783052402 Functional Loss - POLI ENSG00000101751 CDS Human protein_coding chr18:51820104 chr18:51820107 nonsynonymous SNV 0.899 0 24 hm5C_associated_SNPs_92963 0 0 0 0 1 POLI chr18:51820019 3'AG 51820019 Downstream 89bp
chr16 67229730 67229730 1 + G C SKCM 67229726 + 67229706 67229746 41 ATAGCAAGGACAGTGGTGAGCTCAGTTCACTCCCACTGGGC ATAGCAAGGACAGTGGTGAGCTCACTTCACTCCCACTGGGC < 41bp 0.706472604984972 0.41364822717672 0.38255286 0.28610674 prediction 0.412945209969944 Functional Loss - E2F4 ENSG00000205250 CDS Human protein_coding chr16:67229726 chr16:67229730 nonsynonymous SNV 0.994 2 25 hm5C_associated_SNPs_92964 0 0 1 0 1 E2F4 chr16:67229685 3'AG 67229685 Downstream 46bp
chr1 175054584 175054584 1 + G T BLCA 175054581 + 175054561 175054601 41 TATAAGATCACGGTGGTGCCCATGAGAGGAGAGCTGGAGGG TATAAGATCACGGTGGTGCCCATTAGAGGAGAGCTGGAGGG < 41bp 0.706472560580393 0.300476409186776 0.32994515 0.05174476 prediction 0.412945121160786 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175054581 chr1:175054584 nonsynonymous SNV 0.016 0 24 hm5C_associated_SNPs_92965 0 0 0 0 2 TNN chr1:175054541 3'AG 175054541 Downstream 44bp
chr1 175054584 175054584 1 + G T BLCA 175054581 + 175054561 175054601 41 TATAAGATCACGGTGGTGCCCATGAGAGGAGAGCTGGAGGG TATAAGATCACGGTGGTGCCCATTAGAGGAGAGCTGGAGGG < 41bp 0.706472560580393 0.300476409186776 0.32994515 0.05174476 prediction 0.412945121160786 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175054581 chr1:175054584 nonsynonymous SNV 0.016 0 24 hm5C_associated_SNPs_92965 0 0 0 0 2 TNN chr1:175054630 5'GT 175054630 Upstream 47bp
chr22 45689120 45689120 1 + C T LUSC 45689117 + 45689097 45689137 41 CGGCGGAGCGGAGGCATGATCGTCATCACTTCCATCCTGGG CGGCGGAGCGGAGGCATGATCGTTATCACTTCCATCCTGGG < 41bp 0.730793236462535 0.524320974536185 0.22024217 0.09870267 prediction 0.412944523852699 Functional Loss - UPK3A ENSG00000100373 CDS Human protein_coding chr22:45689117 chr22:45689120 synonymous SNV . 0 24 hm5C_associated_SNPs_92966 0 0 0 0 2 UPK3A chr22:45689062 3'AG 45689062 Downstream 59bp
chr22 45689120 45689120 1 + C T LUSC 45689117 + 45689097 45689137 41 CGGCGGAGCGGAGGCATGATCGTCATCACTTCCATCCTGGG CGGCGGAGCGGAGGCATGATCGTTATCACTTCCATCCTGGG < 41bp 0.730793236462535 0.524320974536185 0.22024217 0.09870267 prediction 0.412944523852699 Functional Loss - UPK3A ENSG00000100373 CDS Human protein_coding chr22:45689117 chr22:45689120 synonymous SNV . 0 24 hm5C_associated_SNPs_92966 0 0 0 0 2 UPK3A chr22:45689194 5'GT 45689194 Upstream 75bp
chr17 48247705 48247705 1 + G A SKCM 48247702 + 48247682 48247722 41 CCTATGTCATGTGCTGCCGGCGGGAGGGAAGGTGAATGTGG CCTATGTCATGTGCTGCCGGCGGAAGGGAAGGTGAATGTGG < 41bp 0.80320870977561 0.596740037801046 0.7729493 0.67556936 prediction 0.412937343949128 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48247702 chr17:48247705 nonsynonymous SNV 0.479 5 24 hm5C_associated_SNPs_92969 0 0 0 0 1 SGCA chr17:48247712 5'GT 48247712 Upstream 8bp
chr19 51629048 51629048 1 + G A SKCM 51629045 + 51629025 51629065 41 TCACCCTCATCCCACAGCCCCAGGACCATGGCACCAGCCTC TCACCCTCATCCCACAGCCCCAGAACCATGGCACCAGCCTC < 41bp 0.815801331920213 0.609332986101458 0.15688446 0.05385822 prediction 0.412936691637511 Functional Loss - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51629045 chr19:51629048 nonsynonymous SNV 0.121 3 24 hm5C_associated_SNPs_92970 0 0 0 0 1 SIGLEC9 chr19:51629132 5'GT 51629132 Upstream 85bp
chr3 158402330 158402330 1 + C T STAD 158402327 + 158402307 158402347 41 TAACAGGGGTTTTTAGATGCCTGCGAGAAGGGCCCTCTTTC TAACAGGGGTTTTTAGATGCCTGTGAGAAGGGCCCTCTTTC < 41bp 0.71713712091697 0.510672456908121 0.15039381 0.12538296 prediction 0.412929328017697 Functional Loss - GFM1 ENSG00000168827 CDS Human protein_coding chr3:158402327 chr3:158402330 synonymous SNV . 0 24 hm5C_associated_SNPs_92971 0 0 0 0 1 GFM1 chr3:158402313 3'AG 158402313 Downstream 18bp
chr12 54448143 54448143 1 + C T rs562042098 54448141 + 54448121 54448161 41 ATGAAAAAAATTCACGTTAGCACGGGTAGGCAACTTTGCTT ATGAAAAAAATTCACGTTAGCATGGGTAGGCAACTTTGCTT < 41bp 0.830187160794443 0.623729780323156 0.48321623 0.78923136 prediction 0.412914760942573 Functional Loss - HOXC4 ENSG00000198353;ENSG00000273266 CDS Human other chr12:54448141 chr12:54448143 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_92975 0 0 1 0 1 HOXC4 chr12:54448145 5'GT 54448145 Upstream 3bp
chr17 41001199 41001199 1 + G A COAD 41001196 + 41001176 41001216 41 GCTACAGCGCCCACAGCTGACTCGGCAGGTCCTGGGAAAGG GCTACAGCGCCCACAGCTGACTCAGCAGGTCCTGGGAAAGG < 41bp 0.801435944036742 0.594978660061584 0.111665756 0.11478418 prediction 0.412914567950317 Functional Loss - AOC2 ENSG00000131480 CDS Human protein_coding chr17:41001196 chr17:41001199 nonsynonymous SNV 0.983 0 24 hm5C_associated_SNPs_92976 0 0 1 0 1 AOC2 chr17:41001103 3'AG 41001103 Downstream 97bp
chrX 46322201 46322201 1 + G T COAD 46322197 + 46322177 46322217 41 TTACAGGAATCATTGACCTTCAAGGACGTGTTTGTGGACTT TTACAGGAATCATTGACCTTCAAGTACGTGTTTGTGGACTT < 41bp 0.721067303056059 0.514610739550078 0.5441194 0.25863662 prediction 0.412913127011962 Functional Loss - KRBOX4 ENSG00000147121 CDS Human protein_coding chrX:46322197 chrX:46322201 nonsynonymous SNV 0.984 3 25 hm5C_associated_SNPs_92978 0 0 0 0 1 KRBOX4 chrX:46322183 3'AG 46322183 Downstream 19bp
chr15 75562432 75562432 1 + G T LUSC 75562430 + 75562410 75562450 41 AAGATTTTTATGAAGTGAGCCTGGACAACAACGTGGAGCCT AAGATTTTTATGAAGTGAGCCTTGACAACAACGTGGAGCCT < 41bp 0.706454575049616 0.368166337751316 0.36262912 0.122859836 prediction 0.412909150099231 Functional Loss - GOLGA6C ENSG00000167195 CDS Human protein_coding chr15:75562430 chr15:75562432 synonymous SNV . 0 23 hm5C_associated_SNPs_92979 0 0 0 0 1 GOLGA6C chr15:75562413 3'AG 75562413 Downstream 20bp
chr7 31011680 31011680 1 + C T UCEC 31011677 + 31011657 31011697 41 AAGGATGCTGCCCTTTTCCACAGCGACGACACTGACCACTG AAGGATGCTGCCCTTTTCCACAGTGACGACACTGACCACTG < 41bp 0.721059396563443 0.514608021301421 0.22179979 0.15719604 prediction 0.412902750524045 Functional Loss - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31011677 chr7:31011680 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_92981 0 0 0 0 1 GHRHR chr7:31011710 5'GT 31011710 Upstream 31bp
chr8 42837793 42837793 1 + G A SKCM 42837790 + 42837770 42837810 41 GGTTAATGCCTCTTGGAAGTCAGGAGTCTTCAGACAGTCTA GGTTAATGCCTCTTGGAAGTCAGAAGTCTTCAGACAGTCTA < 41bp 0.756095885486948 0.549648114048973 0.890033 0.5543852 prediction 0.41289554287595 Functional Loss - HOOK3 ENSG00000168172 CDS Human protein_coding chr8:42837790 chr8:42837793 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_92985 0 0 1 0 1 HOOK3 chr8:42837839 5'GT 42837839 Upstream 47bp
chr21 45711046 45711046 1 + G T CESC 45711044 + 45711024 45711064 41 TCTGCTGTGACGGCTGCCCTCGGGCCTTCCACCTGGCCTGC TCTGCTGTGACGGCTGCCCTCGTGCCTTCCACCTGGCCTGC < 41bp 0.922043745769745 0.715596158143586 0.9228809 0.48013362 prediction 0.412895175252319 Functional Loss - AIRE ENSG00000160224 CDS Human protein_coding chr21:45711044 chr21:45711046 synonymous SNV . 0 23 hm5C_associated_SNPs_92986 0 0 0 0 2 AIRE chr21:45710978 3'AG 45710978 Downstream 69bp
chr21 45711046 45711046 1 + G T CESC 45711044 + 45711024 45711064 41 TCTGCTGTGACGGCTGCCCTCGGGCCTTCCACCTGGCCTGC TCTGCTGTGACGGCTGCCCTCGTGCCTTCCACCTGGCCTGC < 41bp 0.922043745769745 0.715596158143586 0.9228809 0.48013362 prediction 0.412895175252319 Functional Loss - AIRE ENSG00000160224 CDS Human protein_coding chr21:45711044 chr21:45711046 synonymous SNV . 0 23 hm5C_associated_SNPs_92986 0 0 0 0 2 AIRE chr21:45711093 5'GT 45711093 Upstream 48bp
chr19 49464139 49464139 1 + C T UCEC 49464136 + 49464116 49464156 41 CATTGGACTTCCTCCGGGAGCGGCTGTTGGGCTGGATCCAA CATTGGACTTCCTCCGGGAGCGGTTGTTGGGCTGGATCCAA < 41bp 0.710575123057252 0.504131177785016 0.5111776 0.5464978 prediction 0.412887890544471 Functional Loss - BAX ENSG00000087088 CDS Human protein_coding chr19:49464136 chr19:49464139 synonymous SNV . 0 24 hm5C_associated_SNPs_92988 0 0 1 2 2 BAX chr19:49464067 3'AG 49464067 Downstream 73bp
chr19 49464139 49464139 1 + C T UCEC 49464136 + 49464116 49464156 41 CATTGGACTTCCTCCGGGAGCGGCTGTTGGGCTGGATCCAA CATTGGACTTCCTCCGGGAGCGGTTGTTGGGCTGGATCCAA < 41bp 0.710575123057252 0.504131177785016 0.5111776 0.5464978 prediction 0.412887890544471 Functional Loss - BAX ENSG00000087088 CDS Human protein_coding chr19:49464136 chr19:49464139 synonymous SNV . 0 24 hm5C_associated_SNPs_92988 0 0 1 2 2 BAX chr19:49464171 5'GT 49464171 Upstream 33bp
chr10 105178383 105178383 1 + G T LUSC 105178379 + 105178359 105178399 41 GTCCTGTGTCTGAGCCAGAGCGAGGGGCGTGTTGTATCCTT GTCCTGTGTCTGAGCCAGAGCGAGTGGCGTGTTGTATCCTT < 41bp 0.731408389951892 0.524964580343054 0.9053445 0.44854552 prediction 0.412887619217676 Functional Loss - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105178379 chr10:105178383 nonsynonymous SNV 0.117 1 25 hm5C_associated_SNPs_92989 0 0 1 0 1 PDCD11 chr10:105178391 5'GT 105178391 Upstream 9bp
chr19 57744047 57744047 1 + C T COAD 57744045 + 57744025 57744065 41 TTAGATGAACAGCGCACAGCCACGGTGAGGTGCGGGTCTGG TTAGATGAACAGCGCACAGCCATGGTGAGGTGCGGGTCTGG < 41bp 0.844565827487998 0.638123023292044 0.12117258 0.11823937 prediction 0.412885608391908 Functional Loss - AURKC ENSG00000105146 CDS Human protein_coding chr19:57744045 chr19:57744047 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_92990 0 0 0 0 1 AURKC chr19:57744048 5'GT 57744048 Upstream 2bp
chr19 30101445 30101445 1 + C T ESCA 30101442 + 30101422 30101462 41 TGGTCCTGGAGTACTTCACCCGCCACAAGCGCAAGGAGAAG TGGTCCTGGAGTACTTCACCCGCTACAAGCGCAAGGAGAAG < 41bp 0.773379737505389 0.5669418004217 0.30317792 0.21665162 prediction 0.412875874167378 Functional Loss - POP4 ENSG00000105171 CDS Human protein_coding chr19:30101442 chr19:30101445 nonsynonymous SNV 0.178 0 24 hm5C_associated_SNPs_92992 0 0 1 0 1 POP4 chr19:30101539 5'GT 30101539 Upstream 95bp
chrX 154261803 154261803 1 + C T UCEC 154261800 + 154261780 154261820 41 AAAAGTATAGCGTGGCAACCCAGCTGTTCATTGGAGGTGTC AAAAGTATAGCGTGGCAACCCAGTTGTTCATTGGAGGTGTC < 41bp 0.739143005257393 0.532711619564382 0.7988301 0.6416146 prediction 0.412862771386021 Functional Loss - FUNDC2 ENSG00000165775 CDS Human protein_coding chrX:154261800 chrX:154261803 synonymous SNV . 0 24 hm5C_associated_SNPs_92995 0 0 1 0 1 FUNDC2 chrX:154261828 5'GT 154261828 Upstream 26bp
chr2 241537463 241537463 1 + A C LUAD 241537462 + 241537442 241537482 41 CTCCACCTACCTGCCGGACACAGAGGGGGCCTTCACAGTGA CTCCACCTACCTGCCGGACACCGAGGGGGCCTTCACAGTGA < 41bp 0.833264596456153 0.626835508817458 0.91499907 0.56639194 prediction 0.412858175277389 Functional Loss - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241537462 chr2:241537463 synonymous SNV . 0 22 hm5C_associated_SNPs_92996 0 0 1 0 1 CAPN10 chr2:241537504 5'GT 241537504 Upstream 42bp
chr7 128315858 128315858 1 + G T ACC 128315854 + 128315834 128315874 41 ATGGCCAATGTTACCTGGCCCCAGGGTCCATTTACCACCTG ATGGCCAATGTTACCTGGCCCCAGTGTCCATTTACCACCTG < 41bp 0.706428246108216 0.488410614050393 0.3494085 0.025902689 prediction 0.412856492216431 Functional Loss - FAM71F2 ENSG00000205085 CDS Human protein_coding chr7:128315854 chr7:128315858 nonsynonymous SNV 0.124 2 25 hm5C_associated_SNPs_92997 0 0 0 1 1 FAM71F2 chr7:128315913 5'GT 128315913 Upstream 56bp
chr19 41626265 41626265 1 + C T SKCM 41626262 + 41626242 41626282 41 TTCTCCCCAGGCATCGCCTTCTCCAGTGGGGATCGATGGAA TTCTCCCCAGGCATCGCCTTCTCTAGTGGGGATCGATGGAA < 41bp 0.706425797533571 0.481520526283395 0.93620205 0.8696827 prediction 0.412851595067143 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41626262 chr19:41626265 synonymous SNV . 0 24 hm5C_associated_SNPs_92998 0 0 0 0 1 CYP2F1 chr19:41626252 3'AG 41626252 Downstream 14bp
chr17 65715895 65715895 1 + G A rs563756333 65715892 + 65715872 65715912 41 CTGGAGAGTATGTTGTTGTACACGATAATAAGGTGAGTTTT CTGGAGAGTATGTTGTTGTACACAATAATAAGGTGAGTTTT < 41bp 0.755544205311255 0.549118571879367 0.023706555 0.025942057 prediction 0.412851266863777 Functional Loss - NOL11 ENSG00000130935 CDS Human protein_coding chr17:65715892 chr17:65715895 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_92999 0 0 1 0 1 NOL11 chr17:65715903 5'GT 65715903 Upstream 9bp
chr1 9777134 9777134 1 + C T UCEC 9777132 + 9777112 9777152 41 TGCCCCCCAGGTCCAGAAACCGCGTGCCAAACCACCTCCCA TGCCCCCCAGGTCCAGAAACCGTGTGCCAAACCACCTCCCA < 41bp 0.706423269972623 0.438916177763644 0.41942742 0.39298192 prediction 0.412846539945245 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9777132 chr1:9777134 nonsynonymous SNV 0.062 1 23 hm5C_associated_SNPs_93001 0 0 1 0 2 PIK3CD chr1:9777122 3'AG 9777122 Downstream 13bp
chr1 9777134 9777134 1 + C T UCEC 9777132 + 9777112 9777152 41 TGCCCCCCAGGTCCAGAAACCGCGTGCCAAACCACCTCCCA TGCCCCCCAGGTCCAGAAACCGTGTGCCAAACCACCTCCCA < 41bp 0.706423269972623 0.438916177763644 0.41942742 0.39298192 prediction 0.412846539945245 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9777132 chr1:9777134 nonsynonymous SNV 0.062 1 23 hm5C_associated_SNPs_93001 0 0 1 0 2 PIK3CD chr1:9777166 5'GT 9777166 Upstream 33bp
chr3 45987986 45987986 1 + G A UCEC 45987983 + 45987963 45988003 41 GAACAGACACCATGGCAGAGCATGATTACCATGAAGACTAT GAACAGACACCATGGCAGAGCATAATTACCATGAAGACTAT < 41bp 0.70642167010929 0.476319972183943 0.08910841 0.043464094 prediction 0.41284334021858 Functional Loss - CXCR6 ENSG00000172215 CDS Human protein_coding chr3:45987983 chr3:45987986 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_93002 0 0 0 0 1 CXCR6 chr3:45987953 3'AG 45987953 Downstream 34bp
chr20 52831957 52831957 1 + A C LGG 52831956 + 52831936 52831976 41 GCCATTCTCAAGAAGAAACGCAAGAAATGTTAGAAGAAGCA GCCATTCTCAAGAAGAAACGCCAGAAATGTTAGAAGAAGCA < 41bp 0.70641738868618 0.462484464166651 0.2919651 0.17979231 prediction 0.41283477737236 Functional Loss - PFDN4 ENSG00000101132 CDS Human protein_coding chr20:52831956 chr20:52831957 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_93003 0 0 1 0 1 PFDN4 chr20:52831979 5'GT 52831979 Upstream 23bp
chr20 52831959 52831959 1 + G A STAD 52831956 + 52831936 52831976 41 GCCATTCTCAAGAAGAAACGCAAGAAATGTTAGAAGAAGCA GCCATTCTCAAGAAGAAACGCAAAAAATGTTAGAAGAAGCA < 41bp 0.70641738868618 0.495189781192104 0.2919651 0.43411416 prediction 0.41283477737236 Functional Loss - PFDN4 ENSG00000101132 CDS Human protein_coding chr20:52831956 chr20:52831959 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_93004 0 0 1 0 1 PFDN4 chr20:52831979 5'GT 52831979 Upstream 21bp
chr7 100346076 100346076 1 + G A SKCM 100346073 + 100346053 100346093 41 CGTCCATGGCATGGGCCCTGCGGGAGGTTTCCCTAATGCAG CGTCCATGGCATGGGCCCTGCGGAAGGTTTCCCTAATGCAG < 41bp 0.706415049011284 0.484897127496873 0.9012003 0.8085573 prediction 0.412830098022568 Functional Loss - ZAN ENSG00000146839 CDS Human protein_coding chr7:100346073 chr7:100346076 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_93006 0 0 0 0 1 ZAN chr7:100346093 5'GT 100346093 Upstream 18bp
chr9 90388066 90388066 1 + G T CHOL 90388064 + 90388044 90388084 41 GGCTTTCAAAACCAGAAGCACAGGAAGGGGAAAGTGCTCCA GGCTTTCAAAACCAGAAGCACATGAAGGGGAAAGTGCTCCA < 41bp 0.909979192366395 0.703564168253825 0.374942 0.37137657 prediction 0.412830048225141 Functional Loss - CTSL3P ENSG00000188029 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:90388064 chr9:90388066 . . 0 23 hm5C_associated_SNPs_93007 0 0 0 0 2 CTSL3P chr9:90388014 3'AG 90388014 Downstream 53bp
chr9 90388066 90388066 1 + G T CHOL 90388064 + 90388044 90388084 41 GGCTTTCAAAACCAGAAGCACAGGAAGGGGAAAGTGCTCCA GGCTTTCAAAACCAGAAGCACATGAAGGGGAAAGTGCTCCA < 41bp 0.909979192366395 0.703564168253825 0.374942 0.37137657 prediction 0.412830048225141 Functional Loss - CTSL3P ENSG00000188029 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:90388064 chr9:90388066 . . 0 23 hm5C_associated_SNPs_93007 0 0 0 0 2 CTSL3P chr9:90388160 5'GT 90388160 Upstream 95bp
chr3 53883724 53883724 1 + G A OV 53883721 + 53883701 53883741 41 GCTACAACATGATCTAATCCCCGGAGACTTGAGGGACCTCC GCTACAACATGATCTAATCCCCGAAGACTTGAGGGACCTCC < 41bp 0.791342151913338 0.584927211037609 0.1810562 0.016391218 prediction 0.412829881751457 Functional Loss - IL17RB ENSG00000056736 CDS Human protein_coding chr3:53883721 chr3:53883724 nonsynonymous SNV 0.847 3 24 hm5C_associated_SNPs_93008 0 0 1 0 2 IL17RB chr3:53883682 3'AG 53883682 Downstream 43bp
chr3 53883724 53883724 1 + G A OV 53883721 + 53883701 53883741 41 GCTACAACATGATCTAATCCCCGGAGACTTGAGGGACCTCC GCTACAACATGATCTAATCCCCGAAGACTTGAGGGACCTCC < 41bp 0.791342151913338 0.584927211037609 0.1810562 0.016391218 prediction 0.412829881751457 Functional Loss - IL17RB ENSG00000056736 CDS Human protein_coding chr3:53883721 chr3:53883724 nonsynonymous SNV 0.847 3 24 hm5C_associated_SNPs_93008 0 0 1 0 2 IL17RB chr3:53883822 5'GT 53883822 Upstream 99bp
chr16 69905834 69905834 1 + G T UCEC 69905830 + 69905810 69905850 41 CACAGTGGCTTGGCCAATGGCACAGGTGAGTGATGGCACCG CACAGTGGCTTGGCCAATGGCACATGTGAGTGATGGCACCG < 41bp 0.709097621478685 0.502683404462319 0.346909 0.2957191 prediction 0.412828434032732 Functional Loss - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69905830 chr16:69905834 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_93010 0 0 1 0 1 WWP2 chr16:69905834 5'GT 69905834 Upstream 1bp
chr7 295978 295978 1 + C T rs141884969 295976 + 295956 295996 41 ACCCTTGGCGGCGTTCCTACCACAAGCGCAAGAAGGCCGAG ACCCTTGGCGGCGTTCCTACCATAAGCGCAAGAAGGCCGAG < 41bp 0.849114890513519 0.642702132916604 0.3861066 0.16288102 prediction 0.41282551519383 Functional Loss - FAM20C ENSG00000177706 CDS Human protein_coding chr7:295976 chr7:295978 synonymous SNV . 0 23 hm5C_associated_SNPs_93012 0 0 0 0 1 FAM20C chr7:295995 5'GT 295995 Upstream 18bp
chr12 6630172 6630172 1 + G A UCEC 6630169 + 6630149 6630189 41 CAGAAAGGCCATCATTCTCACTCGAGAAGCCACAGGCCACT CAGAAAGGCCATCATTCTCACTCAAGAAGCCACAGGCCACT < 41bp 0.802572477540613 0.596159760949693 0.61991936 0.22145665 prediction 0.412825433181839 Functional Loss - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6630169 chr12:6630172 nonsynonymous SNV 0.850 0 24 hm5C_associated_SNPs_93013 0 0 1 0 1 NCAPD2 chr12:6630152 3'AG 6630152 Downstream 21bp
chr8 121357685 121357685 1 + G T STAD 121357682 + 121357662 121357702 41 CCTCATCCATCCGGACTGTCCAAGGGCCTCCTGGGGAGCCT CCTCATCCATCCGGACTGTCCAATGGCCTCCTGGGGAGCCT < 41bp 0.706409441055593 0.313882761375828 0.88692915 0.15605038 prediction 0.412818882111187 Functional Loss - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121357682 chr8:121357685 nonsynonymous SNV 0.681 5 24 hm5C_associated_SNPs_93017 0 0 0 0 1 COL14A1 chr8:121357614 3'AG 121357614 Downstream 72bp
chrX 48759297 48759297 1 + G T COAD 48759294 + 48759274 48759314 41 TCCGTGGTTACCAAATCGGCCAAGAAGCTCAGAAGCAGTAA TCCGTGGTTACCAAATCGGCCAATAAGCTCAGAAGCAGTAA < 41bp 0.706409006659553 0.344009456990283 0.22585315 0.121643305 prediction 0.412818013319106 Functional Loss - PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759294 chrX:48759297 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_93018 0 0 1 0 2 PQBP1 chrX:48759207 3'AG 48759207 Downstream 91bp
chrX 48759297 48759297 1 + G T COAD 48759294 + 48759274 48759314 41 TCCGTGGTTACCAAATCGGCCAAGAAGCTCAGAAGCAGTAA TCCGTGGTTACCAAATCGGCCAATAAGCTCAGAAGCAGTAA < 41bp 0.706409006659553 0.344009456990283 0.22585315 0.121643305 prediction 0.412818013319106 Functional Loss - PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759294 chrX:48759297 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_93018 0 0 1 0 2 PQBP1 chrX:48759319 5'GT 48759319 Upstream 23bp
chr12 6948279 6948279 1 + C T UCEC 6948277 + 6948257 6948297 41 TGTGCCCTGGCACTGTGGCACACGTGGGCACCTGAGCACAG TGTGCCCTGGCACTGTGGCACATGTGGGCACCTGAGCACAG < 41bp 0.706406538703901 0.450550509807596 0.32202354 0.35424256 prediction 0.412813077407802 Functional Loss - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6948277 chr12:6948279 nonsynonymous SNV 0.988 3 23 hm5C_associated_SNPs_93020 0 0 1 0 1 P3H3 chr12:6948304 5'GT 6948304 Upstream 26bp
chr3 51981894 51981894 1 + G A rs200954849 51981891 + 51981871 51981911 41 TGGCTTCGACAGTGTCATTGCCCGAGGCCACACCGAGCCTG TGGCTTCGACAGTGTCATTGCCCAAGGCCACACCGAGCCTG < 41bp 0.827371845971641 0.620965403147739 0.5358945 0.30739024 prediction 0.412812885647805 Functional Loss - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51981891 chr3:51981894 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_93021 0 0 0 0 1 PARP3 chr3:51981911 5'GT 51981911 Upstream 18bp
chr17 80012405 80012405 1 + G A UCEC 80012402 + 80012382 80012422 41 TCAGGGAGCTGCAGAACGCACCCGACGCCATCCCTGAGAGC TCAGGGAGCTGCAGAACGCACCCAACGCCATCCCTGAGAGC < 41bp 0.826478826771632 0.62008132977685 0.13172805 0.06610417 prediction 0.412794993989565 Functional Loss - GPS1 ENSG00000169727 CDS Human protein_coding chr17:80012402 chr17:80012405 nonsynonymous SNV 0.338 2 24 hm5C_associated_SNPs_93026 0 0 1 0 2 GPS1 chr17:80012374 3'AG 80012374 Downstream 32bp
chr17 80012405 80012405 1 + G A UCEC 80012402 + 80012382 80012422 41 TCAGGGAGCTGCAGAACGCACCCGACGCCATCCCTGAGAGC TCAGGGAGCTGCAGAACGCACCCAACGCCATCCCTGAGAGC < 41bp 0.826478826771632 0.62008132977685 0.13172805 0.06610417 prediction 0.412794993989565 Functional Loss - GPS1 ENSG00000169727 CDS Human protein_coding chr17:80012402 chr17:80012405 nonsynonymous SNV 0.338 2 24 hm5C_associated_SNPs_93026 0 0 1 0 2 GPS1 chr17:80012386 3'AG 80012386 Downstream 20bp
chr19 17598130 17598130 1 + G T UCEC 17598128 + 17598108 17598148 41 GCCCCCTTGGCACAGATCCCCAGCAAGGGCATGGACGGTGA GCCCCCTTGGCACAGATCCCCATCAAGGGCATGGACGGTGA < 41bp 0.70639724899988 0.354102687548433 0.22676405 0.047292054 prediction 0.41279449799976 Functional Loss - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17598128 chr19:17598130 nonsynonymous SNV 0.237 0 23 hm5C_associated_SNPs_93027 0 0 0 0 1 SLC27A1 chr19:17598144 5'GT 17598144 Upstream 15bp
chr16 2578111 2578111 1 + G T UCEC 2578107 + 2578087 2578127 41 GCAGAGGATGCTGTGTGGAGCGGAGCCACCTTCATCACCCA GCAGAGGATGCTGTGTGGAGCGGATCCACCTTCATCACCCA < 41bp 0.706397217730388 0.483414025474741 0.34923524 0.23795718 prediction 0.412794435460776 Functional Loss - AMDHD2 ENSG00000162066 CDS Human protein_coding chr16:2578107 chr16:2578111 nonsynonymous SNV 0.972 4 25 hm5C_associated_SNPs_93028 0 0 1 0 2 AMDHD2 chr16:2578061 3'AG 2578061 Downstream 51bp
chr16 2578111 2578111 1 + G T UCEC 2578107 + 2578087 2578127 41 GCAGAGGATGCTGTGTGGAGCGGAGCCACCTTCATCACCCA GCAGAGGATGCTGTGTGGAGCGGATCCACCTTCATCACCCA < 41bp 0.706397217730388 0.483414025474741 0.34923524 0.23795718 prediction 0.412794435460776 Functional Loss - AMDHD2 ENSG00000162066 CDS Human protein_coding chr16:2578107 chr16:2578111 nonsynonymous SNV 0.972 4 25 hm5C_associated_SNPs_93028 0 0 1 0 2 AMDHD2 chr16:2578149 5'GT 2578149 Upstream 39bp
chr6 33179547 33179547 1 + C T SKCM 33179545 + 33179525 33179565 41 AATGCCACAGTGGACCACCTCTCCAAGTACTTGGCCCTGCG AATGCCACAGTGGACCACCTCTTCAAGTACTTGGCCCTGCG < 41bp 0.831193622728975 0.624798304458709 0.9640056 0.15083107 prediction 0.412790636540531 Functional Loss - RING1 ENSG00000204227 CDS Human protein_coding chr6:33179545 chr6:33179547 nonsynonymous SNV 0.912 5 23 hm5C_associated_SNPs_93029 0 0 1 0 1 RING1 chr6:33179506 3'AG 33179506 Downstream 42bp
chr17 58761378 58761378 1 + T C UCEC 58761377 + 58761357 58761397 41 TGGAAAGTGTTGTGACTTTTCTGCAGGATGTTGTGCCACAG TGGAAAGTGTTGTGACTTTTCCGCAGGATGTTGTGCCACAG < 41bp 0.706394208230101 0.480687133786362 0.27888364 0.36916435 prediction 0.412788416460202 Functional Loss - BCAS3 ENSG00000141376 CDS Human protein_coding chr17:58761377 chr17:58761378 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_93030 0 0 1 0 3 BCAS3 chr17:58761343 3'AG 58761343 Downstream 36bp
chr17 58761378 58761378 1 + T C UCEC 58761377 + 58761357 58761397 41 TGGAAAGTGTTGTGACTTTTCTGCAGGATGTTGTGCCACAG TGGAAAGTGTTGTGACTTTTCCGCAGGATGTTGTGCCACAG < 41bp 0.706394208230101 0.480687133786362 0.27888364 0.36916435 prediction 0.412788416460202 Functional Loss - BCAS3 ENSG00000141376 CDS Human protein_coding chr17:58761377 chr17:58761378 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_93030 0 0 1 0 3 BCAS3 chr17:58761397 5'GT 58761397 Upstream 20bp
chr17 58761378 58761378 1 + T C UCEC 58761377 + 58761357 58761397 41 TGGAAAGTGTTGTGACTTTTCTGCAGGATGTTGTGCCACAG TGGAAAGTGTTGTGACTTTTCCGCAGGATGTTGTGCCACAG < 41bp 0.706394208230101 0.480687133786362 0.27888364 0.36916435 prediction 0.412788416460202 Functional Loss - BCAS3 ENSG00000141376 CDS Human protein_coding chr17:58761377 chr17:58761378 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_93030 0 0 1 0 3 BCAS3 chr17:58761401 5'GT 58761401 Upstream 24bp
chr5 5190204 5190204 1 + G A UCEC 5190201 + 5190181 5190221 41 ACGCCATCTTACTGACTGGTCTGGATATATGTTCCTGGAAG ACGCCATCTTACTGACTGGTCTGAATATATGTTCCTGGAAG < 41bp 0.706391425931916 0.467579663668376 0.1123341 0.02687198 prediction 0.412782851863832 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5190201 chr5:5190204 nonsynonymous SNV 0.993 5 24 hm5C_associated_SNPs_93033 0 0 0 0 1 ADAMTS16 chr5:5190243 5'GT 5190243 Upstream 40bp
chr17 40837368 40837368 1 + C T BLCA 40837365 + 40837345 40837385 41 AAGGACGGTCTTCTGCTGCACGCCGAGGGCGCCCAGGGCGA AAGGACGGTCTTCTGCTGCACGCTGAGGGCGCCCAGGGCGA < 41bp 0.738985503702991 0.532596905336172 0.16409674 0.18397868 prediction 0.412777196733639 Functional Loss - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40837365 chr17:40837368 synonymous SNV . 0 24 hm5C_associated_SNPs_93036 0 0 0 0 1 CNTNAP1 chr17:40837438 5'GT 40837438 Upstream 71bp
chr11 43876335 43876335 1 + C T UCEC 43876332 + 43876312 43876352 41 GCCAACTTTGGATAAGCCCTCTCCGGAGACGTTTGTGAAGT GCCAACTTTGGATAAGCCCTCTCTGGAGACGTTTGTGAAGT < 41bp 0.706387564732625 0.471042339124659 0.36997265 0.2170999 prediction 0.412775129465249 Functional Loss - HSD17B12 ENSG00000149084 CDS Human protein_coding chr11:43876332 chr11:43876335 nonsynonymous SNV 0.020 2 24 hm5C_associated_SNPs_93037 0 0 1 0 1 HSD17B12 chr11:43876414 5'GT 43876414 Upstream 80bp
chr9 43861068 43861068 1 + A C rs370614516 43861067 + 43861047 43861087 41 GTGACCCTCCGAGGTGCCCCCAGCGGGCACCCGCTCTCGGC GTGACCCTCCGAGGTGCCCCCCGCGGGCACCCGCTCTCGGC < 41bp 0.842212773989846 0.635827445379168 0.4046644 0.12578142 prediction 0.412770657221355 Functional Loss - CNTNAP3B ENSG00000154529 CDS Human protein_coding chr9:43861067 chr9:43861068 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_93039 0 0 0 0 2 CNTNAP3B chr9:43861003 3'AG 43861003 Downstream 66bp
chr9 43861068 43861068 1 + A C rs370614516 43861067 + 43861047 43861087 41 GTGACCCTCCGAGGTGCCCCCAGCGGGCACCCGCTCTCGGC GTGACCCTCCGAGGTGCCCCCCGCGGGCACCCGCTCTCGGC < 41bp 0.842212773989846 0.635827445379168 0.4046644 0.12578142 prediction 0.412770657221355 Functional Loss - CNTNAP3B ENSG00000154529 CDS Human protein_coding chr9:43861067 chr9:43861068 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_93039 0 0 0 0 2 CNTNAP3B chr9:43861006 3'AG 43861006 Downstream 63bp
chr19 38882717 38882717 1 + G A BLCA 38882714 + 38882694 38882734 41 CCTGCAGAGGCTGATGAGTTCCAGAAGAGCCTGCTGGCTGC CCTGCAGAGGCTGATGAGTTCCAAAAGAGCCTGCTGGCTGC < 41bp 0.824592802409475 0.618215161331646 0.62254715 0.3496289 prediction 0.412755282155658 Functional Loss - SPRED3 ENSG00000188766 CDS Human protein_coding chr19:38882714 chr19:38882717 synonymous SNV . 0 24 hm5C_associated_SNPs_93045 0 0 1 0 1 SPRED3 chr19:38882754 5'GT 38882754 Upstream 38bp
chr17 25746825 25746825 1 + G A UCEC 25746822 + 25746802 25746842 41 CGAGCTGGGCTGCCAGCAGACACGGGGCCTAAAGCCTGTTG CGAGCTGGGCTGCCAGCAGACACAGGGCCTAAAGCCTGTTG < 41bp 0.783448907282271 0.577071686627294 0.60501814 0.36275244 prediction 0.412754441309953 Functional Loss - TBC1D3P5 ENSG00000266433 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:25746822 chr17:25746825 . . 0 24 hm5C_associated_SNPs_93047 0 0 0 0 2 TBC1D3P5 chr17:25746796 3'AG 25746796 Downstream 30bp
chr17 25746825 25746825 1 + G A UCEC 25746822 + 25746802 25746842 41 CGAGCTGGGCTGCCAGCAGACACGGGGCCTAAAGCCTGTTG CGAGCTGGGCTGCCAGCAGACACAGGGCCTAAAGCCTGTTG < 41bp 0.783448907282271 0.577071686627294 0.60501814 0.36275244 prediction 0.412754441309953 Functional Loss - TBC1D3P5 ENSG00000266433 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:25746822 chr17:25746825 . . 0 24 hm5C_associated_SNPs_93047 0 0 0 0 2 TBC1D3P5 chr17:25746879 5'GT 25746879 Upstream 55bp
chr3 25502755 25502755 1 + G A PRAD 25502752 + 25502732 25502772 41 CATCTCCACTTCCTCCCCCTCGAGTGTACAAACCCTGCTTC CATCTCCACTTCCTCCCCCTCGAATGTACAAACCCTGCTTC < 41bp 0.706376293245802 0.460591127137194 0.56083214 0.27895522 prediction 0.412752586491604 Functional Loss - RARB ENSG00000077092 CDS Human protein_coding chr3:25502752 chr3:25502755 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_93051 0 0 1 0 2 RARB chr3:25502684 3'AG 25502684 Downstream 72bp
chr3 25502755 25502755 1 + G A PRAD 25502752 + 25502732 25502772 41 CATCTCCACTTCCTCCCCCTCGAGTGTACAAACCCTGCTTC CATCTCCACTTCCTCCCCCTCGAATGTACAAACCCTGCTTC < 41bp 0.706376293245802 0.460591127137194 0.56083214 0.27895522 prediction 0.412752586491604 Functional Loss - RARB ENSG00000077092 CDS Human protein_coding chr3:25502752 chr3:25502755 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_93051 0 0 1 0 2 RARB chr3:25502832 5'GT 25502832 Upstream 78bp
chr1 43779015 43779015 1 + C T COAD 43779013 + 43778993 43779033 41 CCGTGGCCTCAACGCCAGCACGCGCTACCTCTTCCGCATGC CCGTGGCCTCAACGCCAGCACGTGCTACCTCTTCCGCATGC < 41bp 0.706376108833545 0.438444210543481 0.17080328 0.1863026 prediction 0.412752217667091 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43779013 chr1:43779015 nonsynonymous SNV 0.759 0 23 hm5C_associated_SNPs_93052 0 0 0 0 1 TIE1 chr1:43779096 5'GT 43779096 Upstream 82bp
chr16 84884260 84884260 1 + G T LUAD 84884257 + 84884237 84884277 41 TGGGGAGAAGTTTGGGAGAACGCGGTCTACTTTGTCTGCAA TGGGGAGAAGTTTGGGAGAACGCTGTCTACTTTGTCTGCAA < 41bp 0.706375456822311 0.302890425672775 0.9048784 0.31724066 prediction 0.412750913644622 Functional Loss - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84884257 chr16:84884260 synonymous SNV . 0 24 hm5C_associated_SNPs_93054 0 0 0 0 2 CRISPLD2 chr16:84884174 3'AG 84884174 Downstream 87bp
chr16 84884260 84884260 1 + G T LUAD 84884257 + 84884237 84884277 41 TGGGGAGAAGTTTGGGAGAACGCGGTCTACTTTGTCTGCAA TGGGGAGAAGTTTGGGAGAACGCTGTCTACTTTGTCTGCAA < 41bp 0.706375456822311 0.302890425672775 0.9048784 0.31724066 prediction 0.412750913644622 Functional Loss - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84884257 chr16:84884260 synonymous SNV . 0 24 hm5C_associated_SNPs_93054 0 0 0 0 2 CRISPLD2 chr16:84884289 5'GT 84884289 Upstream 30bp
chr3 153958330 153958330 1 + G A UCEC 153958327 + 153958307 153958347 41 CTGACAGTCCTTAGTAACCACGCGAATGAGAAAGTGGAGAT CTGACAGTCCTTAGTAACCACGCAAATGAGAAAGTGGAGAT < 41bp 0.796507227143704 0.590134180069799 0.4858367 0.4236493 prediction 0.412746094147809 Functional Loss - ARHGEF26 ENSG00000114790 CDS Human protein_coding chr3:153958327 chr3:153958330 synonymous SNV . 0 24 hm5C_associated_SNPs_93056 0 0 1 0 1 ARHGEF26 chr3:153958368 5'GT 153958368 Upstream 39bp
chr19 55087302 55087302 1 + G A rs7249030 55087299 + 55087279 55087319 41 TTCTATGACAGACCCTCTCTCTCGGTGCAGCCGGTCCCCAC TTCTATGACAGACCCTCTCTCTCAGTGCAGCCGGTCCCCAC < 41bp 0.813289771518236 0.606916942990241 0.20448881 0.17559376 prediction 0.412745657055991 Functional Loss - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55087299 chr19:55087302 synonymous SNV . 0 24 hm5C_associated_SNPs_93057 0 0 0 0 1 LILRA2 chr19:55087274 3'AG 55087274 Downstream 29bp
chr17 6014170 6014170 1 + G A LUAD 6014167 + 6014147 6014187 41 TTGTCAAGCTTCCCAGGAGCCGGGAACACATGGGCACGGCA TTGTCAAGCTTCCCAGGAGCCGGAAACACATGGGCACGGCA < 41bp 0.800450844435764 0.594080842314772 0.78298724 0.3726895 prediction 0.412740004241983 Functional Loss - WSCD1 ENSG00000179314 CDS Human protein_coding chr17:6014167 chr17:6014170 synonymous SNV . 0 24 hm5C_associated_SNPs_93059 0 0 1 0 2 WSCD1 chr17:6014091 3'AG 6014091 Downstream 80bp
chr17 6014170 6014170 1 + G A LUAD 6014167 + 6014147 6014187 41 TTGTCAAGCTTCCCAGGAGCCGGGAACACATGGGCACGGCA TTGTCAAGCTTCCCAGGAGCCGGAAACACATGGGCACGGCA < 41bp 0.800450844435764 0.594080842314772 0.78298724 0.3726895 prediction 0.412740004241983 Functional Loss - WSCD1 ENSG00000179314 CDS Human protein_coding chr17:6014167 chr17:6014170 synonymous SNV . 0 24 hm5C_associated_SNPs_93059 0 0 1 0 2 WSCD1 chr17:6014255 5'GT 6014255 Upstream 86bp
chr7 128487918 128487918 1 + G T UCEC 128487916 + 128487896 128487936 41 GGTGGCTGTGCTGGGCCCCACAGGTATAGAATGGCCGGGGC GGTGGCTGTGCTGGGCCCCACATGTATAGAATGGCCGGGGC < 41bp 0.706366724551331 0.359842546347268 0.8544543 0.29065704 prediction 0.412733449102662 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128487916 chr7:128487918 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_93060 0 0 0 0 1 FLNC chr7:128487918 5'GT 128487918 Upstream 1bp
chr4 88903741 88903741 1 + C T HNSC 88903739 + 88903719 88903759 41 CCCGTTGCCCAGGACCTGAACGCGCCTTCTGATTGGGACAG CCCGTTGCCCAGGACCTGAACGTGCCTTCTGATTGGGACAG < 41bp 0.706363830793526 0.43782669640539 0.2561313 0.2133331 prediction 0.412727661587052 Functional Loss - SPP1 ENSG00000118785 CDS Human protein_coding chr4:88903739 chr4:88903741 nonsynonymous SNV 0.006 0 23 hm5C_associated_SNPs_93063 0 0 1 0 1 SPP1 chr4:88903644 3'AG 88903644 Downstream 98bp
chr19 571513 571513 1 + G A rs28915397 571510 + 571490 571530 41 TCTGGGTTTACGCGTCACCTCGGGCGGGACCCGATCCTCCG TCTGGGTTTACGCGTCACCTCGGACGGGACCCGATCCTCCG < 41bp 0.811675027898913 0.605313604624563 0.9073019 0.35096353 prediction 0.4127228465487 Functional Loss - BSG ENSG00000267751 ncRNA_exonic Human protein_coding chr19:571510 chr19:571513 . . 0 24 hm5C_associated_SNPs_93066 0 0 1 0 1 BSG chr19:571579 5'GT 571579 Upstream 67bp
chr2 98264524 98264524 1 + C T rs144164793 98264521 + 98264501 98264541 41 AAGGCGAGGCCCAGCGATGCCCCCGCTGTGGAGCCCATTAC AAGGCGAGGCCCAGCGATGCCCCTGCTGTGGAGCCCATTAC < 41bp 0.733077840464099 0.526717540229313 0.030841947 0.06778893 prediction 0.412720600469572 Functional Loss - COX5B ENSG00000135940 CDS Human protein_coding chr2:98264521 chr2:98264524 nonsynonymous SNV 0.675 0 24 hm5C_associated_SNPs_93068 0 0 1 0 1 COX5B chr2:98264459 3'AG 98264459 Downstream 66bp
chr19 36719719 36719719 1 + C T rs117032967 36719717 + 36719697 36719737 41 AAAGAAGTGGGAAGGATCTGCGCGGGTGAGTAAATGACAGG AAAGAAGTGGGAAGGATCTGCGTGGGTGAGTAAATGACAGG < 41bp 0.732783363963417 0.526423149134478 0.6270718 0.55259466 prediction 0.412720429657878 Functional Loss - ZNF146 ENSG00000167635 UTR5 Human protein_coding chr19:36719717 chr19:36719719 . . 0 23 hm5C_associated_SNPs_93070 0 0 1 0 2 ZNF146 chr19:36719650 3'AG 36719650 Downstream 70bp
chr19 36719719 36719719 1 + C T rs117032967 36719717 + 36719697 36719737 41 AAAGAAGTGGGAAGGATCTGCGCGGGTGAGTAAATGACAGG AAAGAAGTGGGAAGGATCTGCGTGGGTGAGTAAATGACAGG < 41bp 0.732783363963417 0.526423149134478 0.6270718 0.55259466 prediction 0.412720429657878 Functional Loss - ZNF146 ENSG00000167635 UTR5 Human protein_coding chr19:36719717 chr19:36719719 . . 0 23 hm5C_associated_SNPs_93070 0 0 1 0 2 ZNF146 chr19:36719721 5'GT 36719721 Upstream 3bp
chr22 46688752 46688752 1 + A C LUSC 46688751 + 46688731 46688771 41 CTGACCGAGCGGCTCATCCGCAAGGCAGCTACCGTCCACCT CTGACCGAGCGGCTCATCCGCCAGGCAGCTACCGTCCACCT < 41bp 0.836663141840245 0.630304020412017 0.67868257 0.40303627 prediction 0.412718242856456 Functional Loss - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46688751 chr22:46688752 nonsynonymous SNV 0.894 3 22 hm5C_associated_SNPs_93073 0 0 0 0 1 TTC38 chr22:46688688 3'AG 46688688 Downstream 65bp
chr22 29879464 29879464 1 + G A SKCM 29879461 + 29879441 29879481 41 TACCGGCGTCAGCTGCAGGCCAGGACCACAGAGCTGGAGGC TACCGGCGTCAGCTGCAGGCCAGAACCACAGAGCTGGAGGC < 41bp 0.81658811411415 0.610231491537007 0.27177244 0.1333299 prediction 0.412713245154286 Functional Loss - NEFH ENSG00000100285 CDS Human protein_coding chr22:29879461 chr22:29879464 synonymous SNV . 0 24 hm5C_associated_SNPs_93074 0 0 0 0 1 NEFH chr22:29879563 5'GT 29879563 Upstream 100bp
chr7 64378633 64378633 1 + C T STAD 64378630 + 64378610 64378650 41 CTGGAGCAAGGAAAAGAGCCCTGCAATATGAAGAGACATGC CTGGAGCAAGGAAAAGAGCCCTGTAATATGAAGAGACATGC < 41bp 0.706356354822059 0.475083180531953 0.3733799 0.46987712 prediction 0.412712709644117 Functional Loss - ZNF273 ENSG00000198039 CDS Human protein_coding chr7:64378630 chr7:64378633 synonymous SNV . 0 24 hm5C_associated_SNPs_93075 0 0 1 0 2 ZNF273 chr7:64378575 3'AG 64378575 Downstream 59bp
chr7 64378633 64378633 1 + C T STAD 64378630 + 64378610 64378650 41 CTGGAGCAAGGAAAAGAGCCCTGCAATATGAAGAGACATGC CTGGAGCAAGGAAAAGAGCCCTGTAATATGAAGAGACATGC < 41bp 0.706356354822059 0.475083180531953 0.3733799 0.46987712 prediction 0.412712709644117 Functional Loss - ZNF273 ENSG00000198039 CDS Human protein_coding chr7:64378630 chr7:64378633 synonymous SNV . 0 24 hm5C_associated_SNPs_93075 0 0 1 0 2 ZNF273 chr7:64378670 5'GT 64378670 Upstream 38bp
chr16 88781082 88781082 1 + C T rs61744519 88781079 + 88781059 88781099 41 CCTGACTGAGACCCGGACACCCCCGGGGCCCTGCTGTTCTC CCTGACTGAGACCCGGACACCCCTGGGGCCCTGCTGTTCTC < 41bp 0.706356111529068 0.497636286745044 0.13243368 0.0872173 prediction 0.412712223058137 Functional Loss - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781079 chr16:88781082 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_93076 0 0 1 0 2 CTU2 chr16:88780995 3'AG 88780995 Downstream 88bp
chr16 88781082 88781082 1 + C T rs61744519 88781079 + 88781059 88781099 41 CCTGACTGAGACCCGGACACCCCCGGGGCCCTGCTGTTCTC CCTGACTGAGACCCGGACACCCCTGGGGCCCTGCTGTTCTC < 41bp 0.706356111529068 0.497636286745044 0.13243368 0.0872173 prediction 0.412712223058137 Functional Loss - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781079 chr16:88781082 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_93076 0 0 1 0 2 CTU2 chr16:88781145 5'GT 88781145 Upstream 64bp
chr17 6927467 6927467 1 + G T UCEC 6927463 + 6927443 6927483 41 GGGTGGACGTGCTCTCTCTGCCCGGGGGTCCCGAAGCGAGA GGGTGGACGTGCTCTCTCTGCCCGTGGGTCCCGAAGCGAGA < 41bp 0.725246613416234 0.518892892914998 0.40246353 0.13508439 prediction 0.412707441002473 Functional Loss - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6927463 chr17:6927467 nonsynonymous SNV 0.677 0 25 hm5C_associated_SNPs_93077 0 0 0 0 1 BCL6B chr17:6927402 3'AG 6927402 Downstream 66bp
chr7 5267771 5267771 1 + C T STAD 5267768 + 5267748 5267788 41 CCGCGGTTGTTGGTGGGTGCCGCCGACGGGTACCTGTACAT CCGCGGTTGTTGGTGGGTGCCGCTGACGGGTACCTGTACAT < 41bp 0.76514144114497 0.558788294909746 0.09509051 0.06682548 prediction 0.412706292470447 Functional Loss - WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5267768 chr7:5267771 synonymous SNV . 0 24 hm5C_associated_SNPs_93078 0 0 1 0 2 WIPI2 chr7:5267735 3'AG 5267735 Downstream 37bp
chr7 5267771 5267771 1 + C T STAD 5267768 + 5267748 5267788 41 CCGCGGTTGTTGGTGGGTGCCGCCGACGGGTACCTGTACAT CCGCGGTTGTTGGTGGGTGCCGCTGACGGGTACCTGTACAT < 41bp 0.76514144114497 0.558788294909746 0.09509051 0.06682548 prediction 0.412706292470447 Functional Loss - WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5267768 chr7:5267771 synonymous SNV . 0 24 hm5C_associated_SNPs_93078 0 0 1 0 2 WIPI2 chr7:5267842 5'GT 5267842 Upstream 72bp
chr1 87380809 87380809 1 + G A BLCA 87380806 + 87380786 87380826 41 GCGATGCTCTTCTTGGAAAACCAGATCCAGAAACTGGAGGA GCGATGCTCTTCTTGGAAAACCAAATCCAGAAACTGGAGGA < 41bp 0.706347808439724 0.478412736184168 0.46210638 0.38584772 prediction 0.412695616879447 Functional Loss - HS2ST1 ENSG00000153936 CDS Human protein_coding chr1:87380806 chr1:87380809 synonymous SNV . 0 24 hm5C_associated_SNPs_93080 0 0 1 0 1 HS2ST1 chr1:87380843 5'GT 87380843 Upstream 35bp
chr19 6836517 6836517 1 + C T UCEC 6836514 + 6836494 6836534 41 CTGGAGCCATTGGACCCTTTCTACGGCTCAACCCTGGAGAC CTGGAGCCATTGGACCCTTTCTATGGCTCAACCCTGGAGAC < 41bp 0.706343661598343 0.480273596753317 0.068414986 0.0756298 prediction 0.412687323196686 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6836514 chr19:6836517 nonsynonymous SNV 0.770 2 24 hm5C_associated_SNPs_93085 0 0 1 0 2 VAV1 chr19:6836443 3'AG 6836443 Downstream 75bp
chr19 6836517 6836517 1 + C T UCEC 6836514 + 6836494 6836534 41 CTGGAGCCATTGGACCCTTTCTACGGCTCAACCCTGGAGAC CTGGAGCCATTGGACCCTTTCTATGGCTCAACCCTGGAGAC < 41bp 0.706343661598343 0.480273596753317 0.068414986 0.0756298 prediction 0.412687323196686 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6836514 chr19:6836517 nonsynonymous SNV 0.770 2 24 hm5C_associated_SNPs_93085 0 0 1 0 2 VAV1 chr19:6836579 5'GT 6836579 Upstream 63bp
chr10 114910795 114910795 1 + A T LIHC 114910791 + 114910771 114910811 41 TGGTCCCACCACATCATACGCTACACACGACGGGCATTCCG TGGTCCCACCACATCATACGCTACTCACGACGGGCATTCCG < 41bp 0.706342332467538 0.405322334283123 0.17283636 0.024421245 prediction 0.412684664935075 Functional Loss - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114910791 chr10:114910795 nonsynonymous SNV 0.995 5 25 hm5C_associated_SNPs_93086 0 0 1 0 3 TCF7L2 chr10:114910742 3'AG 114910742 Downstream 54bp
chr10 114910795 114910795 1 + A T LIHC 114910791 + 114910771 114910811 41 TGGTCCCACCACATCATACGCTACACACGACGGGCATTCCG TGGTCCCACCACATCATACGCTACTCACGACGGGCATTCCG < 41bp 0.706342332467538 0.405322334283123 0.17283636 0.024421245 prediction 0.412684664935075 Functional Loss - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114910791 chr10:114910795 nonsynonymous SNV 0.995 5 25 hm5C_associated_SNPs_93086 0 0 1 0 3 TCF7L2 chr10:114910757 3'AG 114910757 Downstream 39bp
chr10 114910795 114910795 1 + A T LIHC 114910791 + 114910771 114910811 41 TGGTCCCACCACATCATACGCTACACACGACGGGCATTCCG TGGTCCCACCACATCATACGCTACTCACGACGGGCATTCCG < 41bp 0.706342332467538 0.405322334283123 0.17283636 0.024421245 prediction 0.412684664935075 Functional Loss - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114910791 chr10:114910795 nonsynonymous SNV 0.995 5 25 hm5C_associated_SNPs_93086 0 0 1 0 3 TCF7L2 chr10:114910882 5'GT 114910882 Upstream 88bp
chr17 685847 685847 1 + G C HNSC 685846 + 685826 685866 41 CAACGAGAGAAACAACCGCTCGAGGAGTCCGCATCCCGCGC CAACGAGAGAAACAACCGCTCCAGGAGTCCGCATCCCGCGC < 41bp 0.896781355622301 0.690442707033748 0.89162284 0.3066155 prediction 0.412677297177107 Functional Loss - MRM3 ENSG00000171861 CDS Human protein_coding chr17:685846 chr17:685847 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_93088 0 0 0 0 1 MRM3 chr17:685932 5'GT 685932 Upstream 86bp
chr9 6330206 6330206 1 + G T COAD 6330204 + 6330184 6330224 41 AACCCTAAAGGAGAAGGAAGCAGAATATAACCCTCTGGAGA AACCCTAAAGGAGAAGGAAGCATAATATAACCCTCTGGAGA < 41bp 0.881087040678428 0.674749635821184 0.81457686 0.40930513 prediction 0.412674809714489 Functional Loss - TPD52L3 ENSG00000170777 CDS Human protein_coding chr9:6330204 chr9:6330206 nonsynonymous SNV 0.030 0 23 hm5C_associated_SNPs_93090 0 0 0 0 1 TPD52L3 chr9:6330182 3'AG 6330182 Downstream 25bp
chr7 134925358 134925358 1 + C T UCEC 134925355 + 134925335 134925375 41 CACAGCTGCAGGAGCTTGAGCATCGGGTGGCCCGGAGACGG CACAGCTGCAGGAGCTTGAGCATTGGGTGGCCCGGAGACGG < 41bp 0.715129646251547 0.508793703305948 0.50491405 0.37414575 prediction 0.412671885891198 Functional Loss - STRA8 ENSG00000146857 CDS Human protein_coding chr7:134925355 chr7:134925358 nonsynonymous SNV 0.405 4 24 hm5C_associated_SNPs_93091 0 0 0 0 1 STRA8 chr7:134925271 3'AG 134925271 Downstream 88bp
chr1 46650064 46650064 1 + G A rs2234268 46650061 + 46650041 46650081 41 AGACTGAGAGCAAGTGTGCCCTCGTGACGGTGTGTGAAACC AGACTGAGAGCAAGTGTGCCCTCATGACGGTGTGTGAAACC < 41bp 0.706333978113169 0.46947823077007 0.23719499 0.34374177 prediction 0.412667956226337 Functional Loss - TSPAN1 ENSG00000117472 CDS Human protein_coding chr1:46650061 chr1:46650064 nonsynonymous SNV 0.990 0 24 hm5C_associated_SNPs_93093 0 0 0 0 1 TSPAN1 chr1:46650069 5'GT 46650069 Upstream 6bp
chr18 48604705 48604705 1 + G A PAAD 48604702 + 48604682 48604722 41 AGGATGAGTTTTGTGAAAGGCTGGGGACCGGATTACCCAAG AGGATGAGTTTTGTGAAAGGCTGAGGACCGGATTACCCAAG < 41bp 0.768460501159192 0.562134286189329 0.42057693 0.2292167 prediction 0.412652429939725 Functional Loss - SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48604702 chr18:48604705 stopgain 0.998 1 24 hm5C_associated_SNPs_93101 1 0 1 0 1 SMAD4 chr18:48604626 3'AG 48604626 Downstream 80bp
chr1 8395553 8395553 1 + C T GBM 8395550 + 8395530 8395570 41 GAGAGCGAGCTGACGGGCTCCAGCGAGCGCGCGGAGCAGCC GAGAGCGAGCTGACGGGCTCCAGTGAGCGCGCGGAGCAGCC < 41bp 0.708892012101971 0.502566757054275 0.38789254 0.30628097 prediction 0.412650510095393 Functional Loss - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8395550 chr1:8395553 synonymous SNV . 0 24 hm5C_associated_SNPs_93103 0 0 0 0 2 SLC45A1 chr1:8395497 3'AG 8395497 Downstream 57bp
chr1 8395553 8395553 1 + C T GBM 8395550 + 8395530 8395570 41 GAGAGCGAGCTGACGGGCTCCAGCGAGCGCGCGGAGCAGCC GAGAGCGAGCTGACGGGCTCCAGTGAGCGCGCGGAGCAGCC < 41bp 0.708892012101971 0.502566757054275 0.38789254 0.30628097 prediction 0.412650510095393 Functional Loss - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8395550 chr1:8395553 synonymous SNV . 0 24 hm5C_associated_SNPs_93103 0 0 0 0 2 SLC45A1 chr1:8395650 5'GT 8395650 Upstream 98bp
chr14 96001666 96001666 1 + C T rs28611006 96001664 + 96001644 96001684 41 TGGTGCAGATCCTGCGGCTGCACGGCGTCCGCGATTACGCG TGGTGCAGATCCTGCGGCTGCATGGCGTCCGCGATTACGCG < 41bp 0.806556827784248 0.600232878951644 0.43140763 0.47761995 prediction 0.412647897665209 Functional Loss - GLRX5 ENSG00000182512 CDS Human protein_coding chr14:96001664 chr14:96001666 synonymous SNV . 0 23 hm5C_associated_SNPs_93104 1 0 1 0 1 GLRX5 chr14:96001721 5'GT 96001721 Upstream 56bp
chr9 95738892 95738892 1 + G A COAD 95738889 + 95738869 95738909 41 ATGGCCCTGGACAGCCAGGTCCCGAAGGTCACCCCCCAGGA ATGGCCCTGGACAGCCAGGTCCCAAAGGTCACCCCCCAGGA < 41bp 0.831451143342316 0.625127299804063 0.65721107 0.12591085 prediction 0.412647687076505 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95738889 chr9:95738892 synonymous SNV . 0 24 hm5C_associated_SNPs_93105 0 0 0 0 1 FGD3 chr9:95738991 5'GT 95738991 Upstream 100bp
chr1 212459623 212459623 1 + C T rs351403 212459621 + 212459601 212459641 41 AGGCAGAGCTGCACCCGCTGCCCCAGCTCAAAGGTAACCTC AGGCAGAGCTGCACCCGCTGCCTCAGCTCAAAGGTAACCTC < 41bp 0.706321580160068 0.447781689691813 0.38957292 0.15006298 prediction 0.412643160320135 Functional Loss - PPP2R5A ENSG00000066027 CDS Human protein_coding chr1:212459621 chr1:212459623 synonymous SNV . 0 23 hm5C_associated_SNPs_93108 0 0 1 0 1 PPP2R5A chr1:212459633 5'GT 212459633 Upstream 11bp
chr12 69042539 69042539 1 + G A HNSC 69042536 + 69042516 69042556 41 TAAGCTAGTCGTTCTTGGCTCAGGAGGCGTTGGAAAGTCTG TAAGCTAGTCGTTCTTGGCTCAGAAGGCGTTGGAAAGTCTG < 41bp 0.797995384023978 0.591673883084378 0.8294265 0.31647915 prediction 0.412643001879201 Functional Loss - RAP1B ENSG00000127314 CDS Human protein_coding chr12:69042536 chr12:69042539 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_93109 0 0 1 0 2 RAP1B chr12:69042479 3'AG 69042479 Downstream 61bp
chr12 69042539 69042539 1 + G A HNSC 69042536 + 69042516 69042556 41 TAAGCTAGTCGTTCTTGGCTCAGGAGGCGTTGGAAAGTCTG TAAGCTAGTCGTTCTTGGCTCAGAAGGCGTTGGAAAGTCTG < 41bp 0.797995384023978 0.591673883084378 0.8294265 0.31647915 prediction 0.412643001879201 Functional Loss - RAP1B ENSG00000127314 CDS Human protein_coding chr12:69042536 chr12:69042539 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_93109 0 0 1 0 2 RAP1B chr12:69042561 5'GT 69042561 Upstream 23bp
chr17 66416340 66416340 1 + G A LUSC 66416337 + 66416317 66416357 41 ATTCCCTCTCTAGGTGGAGCCAGGGCGTGTGATGGGAGCAC ATTCCCTCTCTAGGTGGAGCCAGAGCGTGTGATGGGAGCAC < 41bp 0.818572343371626 0.612256513022146 0.77957135 0.60097265 prediction 0.412631660698961 Functional Loss - ARSG ENSG00000141337 CDS Human protein_coding chr17:66416337 chr17:66416340 synonymous SNV . 0 24 hm5C_associated_SNPs_93112 0 0 0 0 1 ARSG chr17:66416330 3'AG 66416330 Downstream 11bp
chr2 241988519 241988519 1 + T C SARC 241988518 + 241988498 241988538 41 GAGCACGGCGGGAGCTACCTCTGCGTCTGCCACACCGACCA GAGCACGGCGGGAGCTACCTCCGCGTCTGCCACACCGACCA < 41bp 0.706307472295062 0.454478213455433 0.2809689 0.65234375 prediction 0.412614944590123 Functional Loss - SNED1 ENSG00000162804 CDS Human protein_coding chr2:241988518 chr2:241988519 nonsynonymous SNV 0.698 5 22 hm5C_associated_SNPs_93118 0 0 0 0 2 SNED1 chr2:241988439 3'AG 241988439 Downstream 81bp
chr2 241988519 241988519 1 + T C SARC 241988518 + 241988498 241988538 41 GAGCACGGCGGGAGCTACCTCTGCGTCTGCCACACCGACCA GAGCACGGCGGGAGCTACCTCCGCGTCTGCCACACCGACCA < 41bp 0.706307472295062 0.454478213455433 0.2809689 0.65234375 prediction 0.412614944590123 Functional Loss - SNED1 ENSG00000162804 CDS Human protein_coding chr2:241988518 chr2:241988519 nonsynonymous SNV 0.698 5 22 hm5C_associated_SNPs_93118 0 0 0 0 2 SNED1 chr2:241988552 5'GT 241988552 Upstream 34bp
chr2 241988521 241988521 1 + C T UCEC 241988518 + 241988498 241988538 41 GAGCACGGCGGGAGCTACCTCTGCGTCTGCCACACCGACCA GAGCACGGCGGGAGCTACCTCTGTGTCTGCCACACCGACCA < 41bp 0.706307472295062 0.492876025500001 0.2809689 0.20541775 prediction 0.412614944590123 Functional Loss - SNED1 ENSG00000162804 CDS Human protein_coding chr2:241988518 chr2:241988521 synonymous SNV . 0 24 hm5C_associated_SNPs_93119 0 0 0 0 2 SNED1 chr2:241988439 3'AG 241988439 Downstream 83bp
chr2 241988521 241988521 1 + C T UCEC 241988518 + 241988498 241988538 41 GAGCACGGCGGGAGCTACCTCTGCGTCTGCCACACCGACCA GAGCACGGCGGGAGCTACCTCTGTGTCTGCCACACCGACCA < 41bp 0.706307472295062 0.492876025500001 0.2809689 0.20541775 prediction 0.412614944590123 Functional Loss - SNED1 ENSG00000162804 CDS Human protein_coding chr2:241988518 chr2:241988521 synonymous SNV . 0 24 hm5C_associated_SNPs_93119 0 0 0 0 2 SNED1 chr2:241988552 5'GT 241988552 Upstream 32bp
chr11 60695125 60695125 1 + C T BLCA 60695123 + 60695103 60695143 41 CTCCCTCCAGGTGGTCCCCCCTCGAGTCACTGAGCCCCACC CTCCCTCCAGGTGGTCCCCCCTTGAGTCACTGAGCCCCACC < 41bp 0.850646642755351 0.644339816935324 0.90381426 0.36396056 prediction 0.412613651640054 Functional Loss - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60695123 chr11:60695125 stopgain 0.917 0 23 hm5C_associated_SNPs_93121 0 0 1 0 1 TMEM132A chr11:60695113 3'AG 60695113 Downstream 13bp
chr15 40756213 40756213 1 + G A BLCA 40756210 + 40756190 40756230 41 TCTCTGCCCTCTGGGAGAACCCCGAGTCAGGTACCTCTCCC TCTCTGCCCTCTGGGAGAACCCCAAGTCAGGTACCTCTCCC < 41bp 0.796715379267245 0.590409959099139 0.9008571 0.8488128 prediction 0.412610840336214 Functional Loss - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40756210 chr15:40756213 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_93122 0 0 1 0 1 BAHD1 chr15:40756219 5'GT 40756219 Upstream 7bp
chr11 45926284 45926284 1 + C T KIRP 45926281 + 45926261 45926301 41 ACCTGTAGATTGCCACCACCCGCCGGCTCACCGTGCACTTT ACCTGTAGATTGCCACCACCCGCTGGCTCACCGTGCACTTT < 41bp 0.706304591633577 0.490555809180006 0.25907528 0.23239353 prediction 0.412609183267155 Functional Loss - MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926281 chr11:45926284 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_93124 0 0 0 0 1 MAPK8IP1 chr11:45926269 3'AG 45926269 Downstream 16bp
chrX 100356187 100356187 1 + C T LUAD 100356185 + 100356165 100356205 41 CCAAGCAACTCGAAGAACATCTCAAAACATGGACAAAACAA CCAAGCAACTCGAAGAACATCTTAAAACATGGACAAAACAA < 41bp 0.706297580408788 0.418279140423767 0.3576194 0.08044425 prediction 0.412595160817575 Functional Loss - CENPI ENSG00000102384 CDS Human protein_coding chrX:100356185 chrX:100356187 nonsynonymous SNV 0.160 0 23 hm5C_associated_SNPs_93126 0 0 1 0 1 CENPI chrX:100356285 5'GT 100356285 Upstream 99bp
chr21 19629404 19629404 1 + G A SKCM 19629401 + 19629381 19629421 41 CTTTACCAGTGGAATGATGACAGGTGTAACATGAAGCACAA CTTTACCAGTGGAATGATGACAGATGTAACATGAAGCACAA < 41bp 0.766150818117035 0.559853347550498 0.80977714 0.22525841 prediction 0.412594941133074 Functional Loss - CHODL ENSG00000154645 CDS Human protein_coding chr21:19629401 chr21:19629404 synonymous SNV . 0 24 hm5C_associated_SNPs_93127 0 0 0 0 1 CHODL chr21:19629444 5'GT 19629444 Upstream 41bp
chr5 23524588 23524588 1 + G A HNSC 23524585 + 23524565 23524605 41 GGGATGAATACGGCCAGGAACTGGGCATCAAGTGGGGCAGC GGGATGAATACGGCCAGGAACTGAGCATCAAGTGGGGCAGC < 41bp 0.833347331993923 0.62705056745162 0.90258133 0.9052811 prediction 0.412593529084607 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23524585 chr5:23524588 nonsynonymous SNV 0.983 3 24 hm5C_associated_SNPs_93128 0 0 0 0 1 PRDM9 chr5:23524636 5'GT 23524636 Upstream 49bp
chr4 36345147 36345147 1 + C T SARC 36345144 + 36345124 36345164 41 AAGCCCTTTGGGATAACTTGCTCCATTGGCTGGCTGAGGAG AAGCCCTTTGGGATAACTTGCTCTATTGGCTGGCTGAGGAG < 41bp 0.770789631832451 0.564496303454129 0.92298055 0.91762483 prediction 0.412586656756643 Functional Loss - DTHD1 ENSG00000197057 CDS Human protein_coding chr4:36345144 chr4:36345147 nonsynonymous SNV 0.290 1 24 hm5C_associated_SNPs_93129 0 0 0 0 1 DTHD1 chr4:36345124 3'AG 36345124 Downstream 24bp
chr15 45437234 45437234 1 + C T UCEC 45437231 + 45437211 45437251 41 GAGCAGCTGTGACACGGGAGCAGCGGAGGCACCTCCTGGAG GAGCAGCTGTGACACGGGAGCAGTGGAGGCACCTCCTGGAG < 41bp 0.707904311424049 0.501611720942696 0.86713076 0.8322997 prediction 0.412585180962705 Functional Loss - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45437231 chr15:45437234 nonsynonymous SNV 0.657 5 24 hm5C_associated_SNPs_93132 0 0 0 0 1 DUOX1 chr15:45437278 5'GT 45437278 Upstream 45bp
chr11 113144387 113144387 1 - C A rs142447171 113144391 - 113144371 113144411 41 GGCTTGTCCACTGGCCCCAGCGGCGGGAGCAGGAGAGCCCA GGCTTGTCCACTGGCCCCAGCGGCTGGAGCAGGAGAGCCCA < 41bp 0.706987484291205 0.500694909357985 0.6629519 0.25712276 prediction 0.41258514986644 Functional Loss - NCAM1-AS1 ENSG00000227487 ncRNA_exonic Human antisense chr11:113144391 chr11:113144387 . . 0 25 hm5C_associated_SNPs_93133 0 0 0 0 1 NCAM1-AS1 chr11:113144346 5'GT 113144346 Upstream 42bp
chr6 100056654 100056654 1 + G T LUAD 100056651 + 100056631 100056671 41 AGGGGAGCTGGTGGACGAGTCGGGGGGCTCCCCTCTGGAGT AGGGGAGCTGGTGGACGAGTCGGTGGGCTCCCCTCTGGAGT < 41bp 0.941488473195501 0.735201996950097 0.94462293 0.8615566 prediction 0.412572952490809 Functional Loss - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100056651 chr6:100056654 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_93143 0 0 0 0 2 PRDM13 chr6:100056617 3'AG 100056617 Downstream 38bp
chr6 100056654 100056654 1 + G T LUAD 100056651 + 100056631 100056671 41 AGGGGAGCTGGTGGACGAGTCGGGGGGCTCCCCTCTGGAGT AGGGGAGCTGGTGGACGAGTCGGTGGGCTCCCCTCTGGAGT < 41bp 0.941488473195501 0.735201996950097 0.94462293 0.8615566 prediction 0.412572952490809 Functional Loss - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100056651 chr6:100056654 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_93143 0 0 0 0 2 PRDM13 chr6:100056748 5'GT 100056748 Upstream 95bp
chr14 105222095 105222095 1 + C T LGG 105222093 + 105222073 105222113 41 TACAGGGGCCCCGAGGGCTGCACGTGGGCAGATGCTGATTG TACAGGGGCCCCGAGGGCTGCATGTGGGCAGATGCTGATTG < 41bp 0.824968009375219 0.618681886039291 0.7604735 0.7429902 prediction 0.412572246671855 Functional Loss - SIVA1 ENSG00000184990 CDS Human protein_coding chr14:105222093 chr14:105222095 nonsynonymous SNV 0.069 2 23 hm5C_associated_SNPs_93144 0 0 1 0 1 SIVA1 chr14:105222161 5'GT 105222161 Upstream 67bp
chr2 121050795 121050795 1 + A C SKCM 121050791 + 121050771 121050811 41 GACAAGAATGGCAAGAAAAGCAGCAAGAACAAGAAAAGTTT GACAAGAATGGCAAGAAAAGCAGCCAGAACAAGAAAAGTTT < 41bp 0.706284665939839 0.314264534163264 0.5440401 0.45903698 prediction 0.412569331879678 Functional Loss - RALB ENSG00000144118 CDS Human protein_coding chr2:121050791 chr2:121050795 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_93146 0 0 0 3 1 RALB chr2:121050717 3'AG 121050717 Downstream 79bp
chr5 80547086 80547086 1 + T C rs75970007 80547085 + 80547065 80547105 41 TGCCGAGGTCCGGGAGCAGCCTAGGCTATTTCCTCCAAGGT TGCCGAGGTCCGGGAGCAGCCCAGGCTATTTCCTCCAAGGT < 41bp 0.706282585252497 0.475195730756417 0.34893757 0.85725635 prediction 0.412565170504994 Functional Loss - CKMT2 ENSG00000131730 CDS Human protein_coding chr5:80547085 chr5:80547086 synonymous SNV . 0 22 hm5C_associated_SNPs_93147 0 0 0 0 1 CKMT2 chr5:80547103 5'GT 80547103 Upstream 18bp
chr5 80547088 80547088 1 + G T UCEC 80547085 + 80547065 80547105 41 TGCCGAGGTCCGGGAGCAGCCTAGGCTATTTCCTCCAAGGT TGCCGAGGTCCGGGAGCAGCCTATGCTATTTCCTCCAAGGT < 41bp 0.706282585252497 0.326660961925904 0.34893757 0.06209737 prediction 0.412565170504994 Functional Loss - CKMT2 ENSG00000131730 CDS Human protein_coding chr5:80547085 chr5:80547088 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_93148 0 0 0 0 1 CKMT2 chr5:80547103 5'GT 80547103 Upstream 16bp
chr7 76134759 76134759 1 + G A LUSC 76134756 + 76134736 76134776 41 ACAGTGGGCACGTCCAGCACCACGGGTGAGACGGACACCGT ACAGTGGGCACGTCCAGCACCACAGGTGAGACGGACACCGT < 41bp 0.790496781463304 0.584214395263988 0.46072334 0.4997666 prediction 0.41256477239863 Functional Loss - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76134756 chr7:76134759 synonymous SNV . 0 24 hm5C_associated_SNPs_93149 0 0 0 0 1 DTX2 chr7:76134691 3'AG 76134691 Downstream 69bp
chr7 116528204 116528204 1 + C T SKCM 116528201 + 116528181 116528221 41 GTGCGTATAGCAGCAAAATTCATCATTCATGCCCCTCCTGG GTGCGTATAGCAGCAAAATTCATTATTCATGCCCCTCCTGG < 41bp 0.742373024730554 0.536092256448334 0.083420396 0.09148368 prediction 0.412561536564439 Functional Loss - CAPZA2 ENSG00000198898 CDS Human protein_coding chr7:116528201 chr7:116528204 synonymous SNV . 0 24 hm5C_associated_SNPs_93153 0 0 1 0 2 CAPZA2 chr7:116528181 3'AG 116528181 Downstream 24bp
chr7 116528204 116528204 1 + C T SKCM 116528201 + 116528181 116528221 41 GTGCGTATAGCAGCAAAATTCATCATTCATGCCCCTCCTGG GTGCGTATAGCAGCAAAATTCATTATTCATGCCCCTCCTGG < 41bp 0.742373024730554 0.536092256448334 0.083420396 0.09148368 prediction 0.412561536564439 Functional Loss - CAPZA2 ENSG00000198898 CDS Human protein_coding chr7:116528201 chr7:116528204 synonymous SNV . 0 24 hm5C_associated_SNPs_93153 0 0 1 0 2 CAPZA2 chr7:116528244 5'GT 116528244 Upstream 41bp
chr18 2595561 2595561 1 + G A BLCA 2595558 + 2595538 2595578 41 TTAATAAATTAACCAAGGACCTGGAAGCTGAACAACAGAAG TTAATAAATTAACCAAGGACCTGAAAGCTGAACAACAGAAG < 41bp 0.750674470921439 0.544395523267403 0.33441758 0.25449976 prediction 0.412557895308072 Functional Loss - NDC80 ENSG00000080986 CDS Human protein_coding chr18:2595558 chr18:2595561 nonsynonymous SNV 0.983 2 24 hm5C_associated_SNPs_93155 0 0 1 0 1 NDC80 chr18:2595620 5'GT 2595620 Upstream 60bp
chr5 15928547 15928547 1 + T C LIHC 15928546 + 15928526 15928566 41 GTCTCAGGCTGTTACAATATCTCCAACGAGGCCGTCTTTGA GTCTCAGGCTGTTACAATATCCCCAACGAGGCCGTCTTTGA < 41bp 0.706277716253209 0.432733851359219 0.9489977 0.0101827085 prediction 0.412555432506418 Functional Loss - FBXL7 ENSG00000183580 CDS Human protein_coding chr5:15928546 chr5:15928547 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_93156 0 0 0 0 1 FBXL7 chr5:15928610 5'GT 15928610 Upstream 64bp
chr3 30686357 30686357 1 + C T UCEC 30686354 + 30686334 30686374 41 CAGAAATCCTGCATGAGCAACTGCAGCATCACCTCCATCTG CAGAAATCCTGCATGAGCAACTGTAGCATCACCTCCATCTG < 41bp 0.70627563901255 0.481476665206593 0.30352473 0.25063968 prediction 0.412551278025101 Functional Loss - TGFBR2 ENSG00000163513 CDS Human protein_coding chr3:30686354 chr3:30686357 synonymous SNV . 0 24 hm5C_associated_SNPs_93157 0 0 1 0 1 TGFBR2 chr3:30686407 5'GT 30686407 Upstream 51bp
chr1 1389844 1389844 1 + C T rs574526505 1389841 + 1389821 1389861 41 TCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTTGAGGC TCCCTAGTGAGGGAGACGTCCCGTATCACGGTGCTTGAGGC < 41bp 0.715355511203614 0.509080012298036 0.082311034 0.05983153 prediction 0.412550997811154 Functional Loss - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1389841 chr1:1389844 synonymous SNV . 0 24 hm5C_associated_SNPs_93158 0 0 0 0 1 ATAD3C chr1:1389880 5'GT 1389880 Upstream 37bp
chr14 90455406 90455406 1 + C T UCEC 90455403 + 90455383 90455423 41 ACTGGGGAAGGAAAGCAAGACTCCAGGAAAAAGCTCTGTTC ACTGGGGAAGGAAAGCAAGACTCTAGGAAAAAGCTCTGTTC < 41bp 0.784353240214297 0.578083612678587 0.924718 0.8487252 prediction 0.412539255071419 Functional Loss - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90455403 chr14:90455406 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_93159 0 0 1 0 1 TDP1 chr14:90455434 5'GT 90455434 Upstream 29bp
chr14 74665639 74665639 1 + C T HNSC 74665637 + 74665617 74665657 41 GATTCCAGCCAGAGAGATGACACGGGGGAAATTCCTCAATA GATTCCAGCCAGAGAGATGACATGGGGGAAATTCCTCAATA < 41bp 0.843645310637051 0.637375694954345 0.2237331 0.47892857 prediction 0.412539231365412 Functional Loss - LIN52 ENSG00000205659 CDS Human protein_coding chr14:74665637 chr14:74665639 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_93160 0 0 1 0 1 LIN52 chr14:74665625 3'AG 74665625 Downstream 15bp
chr4 89334244 89334244 1 + G A BLCA 89334241 + 89334221 89334261 41 TACCACAGATAACTACGTGTCTCGAGGATGATCTGCTCAGA TACCACAGATAACTACGTGTCTCAAGGATGATCTGCTCAGA < 41bp 0.802123460950608 0.595856673960931 0.39437708 0.2007038 prediction 0.412533573979355 Functional Loss - HERC6 ENSG00000138642 CDS Human protein_coding chr4:89334241 chr4:89334244 nonsynonymous SNV 0.012 0 24 hm5C_associated_SNPs_93161 0 0 1 0 1 HERC6 chr4:89334229 3'AG 89334229 Downstream 16bp
chr10 99512851 99512851 1 + C T GBM 99512848 + 99512828 99512868 41 GATGAGCTGGCCCTGCAGGACAACGGGTTCCTGAGCAAGAA GATGAGCTGGCCCTGCAGGACAATGGGTTCCTGAGCAAGAA < 41bp 0.720672571422056 0.514407724273341 0.6352003 0.6865603 prediction 0.412529694297429 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99512848 chr10:99512851 synonymous SNV . 0 24 hm5C_associated_SNPs_93163 0 0 1 2 2 ZFYVE27 chr10:99512795 3'AG 99512795 Downstream 57bp
chr10 99512851 99512851 1 + C T GBM 99512848 + 99512828 99512868 41 GATGAGCTGGCCCTGCAGGACAACGGGTTCCTGAGCAAGAA GATGAGCTGGCCCTGCAGGACAATGGGTTCCTGAGCAAGAA < 41bp 0.720672571422056 0.514407724273341 0.6352003 0.6865603 prediction 0.412529694297429 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99512848 chr10:99512851 synonymous SNV . 0 24 hm5C_associated_SNPs_93163 0 0 1 2 2 ZFYVE27 chr10:99512939 5'GT 99512939 Upstream 89bp
chr16 76587742 76587742 1 + G A SKCM 76587739 + 76587719 76587759 41 TGCTTTAACTGCAGATCATTCTGGAACAATAGATGACAGAG TGCTTTAACTGCAGATCATTCTGAAACAATAGATGACAGAG < 41bp 0.706264682549097 0.478055692185892 0.35143393 0.15717208 prediction 0.412529365098193 Functional Loss - CNTNAP4 ENSG00000152910;ENSG00000261833 CDS Human other chr16:76587739 chr16:76587742 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_93164 0 0 0 0 2 CNTNAP4 chr16:76587733 3'AG 76587733 Downstream 10bp
chr16 76587742 76587742 1 + G A SKCM 76587739 + 76587719 76587759 41 TGCTTTAACTGCAGATCATTCTGGAACAATAGATGACAGAG TGCTTTAACTGCAGATCATTCTGAAACAATAGATGACAGAG < 41bp 0.706264682549097 0.478055692185892 0.35143393 0.15717208 prediction 0.412529365098193 Functional Loss - CNTNAP4 ENSG00000152910;ENSG00000261833 CDS Human other chr16:76587739 chr16:76587742 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_93164 0 0 0 0 2 CNTNAP4 chr16:76587804 5'GT 76587804 Upstream 63bp
chr6 36988367 36988367 1 + G T UCEC 36988363 + 36988343 36988383 41 TCCCCACTCCTTCCTGGTGTCCGGGAAGCAGCGCACCCTGG TCCCCACTCCTTCCTGGTGTCCGGTAAGCAGCGCACCCTGG < 41bp 0.738156685991088 0.531892754799152 0.88733065 0.623525 prediction 0.412527862383873 Functional Loss - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36988363 chr6:36988367 synonymous SNV . 0 25 hm5C_associated_SNPs_93165 0 0 0 0 2 FGD2 chr6:36988317 3'AG 36988317 Downstream 51bp
chr6 36988367 36988367 1 + G T UCEC 36988363 + 36988343 36988383 41 TCCCCACTCCTTCCTGGTGTCCGGGAAGCAGCGCACCCTGG TCCCCACTCCTTCCTGGTGTCCGGTAAGCAGCGCACCCTGG < 41bp 0.738156685991088 0.531892754799152 0.88733065 0.623525 prediction 0.412527862383873 Functional Loss - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36988363 chr6:36988367 synonymous SNV . 0 25 hm5C_associated_SNPs_93165 0 0 0 0 2 FGD2 chr6:36988396 5'GT 36988396 Upstream 30bp
chr16 29124377 29124377 1 + T C rs557480482 29124376 + 29124356 29124396 41 TGTCACTGATTTCAGTTGTTCTGGAGAATCATGTAGCGACA TGTCACTGATTTCAGTTGTTCCGGAGAATCATGTAGCGACA < 41bp 0.790960323183948 0.584697145985904 0.38029966 0.787538 prediction 0.412526354396088 Functional Loss - RRN3P2 ENSG00000103472 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:29124376 chr16:29124377 . . 0 22 hm5C_associated_SNPs_93166 0 0 0 2 2 RRN3P2 chr16:29124371 3'AG 29124371 Downstream 7bp
chr16 29124377 29124377 1 + T C rs557480482 29124376 + 29124356 29124396 41 TGTCACTGATTTCAGTTGTTCTGGAGAATCATGTAGCGACA TGTCACTGATTTCAGTTGTTCCGGAGAATCATGTAGCGACA < 41bp 0.790960323183948 0.584697145985904 0.38029966 0.787538 prediction 0.412526354396088 Functional Loss - RRN3P2 ENSG00000103472 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:29124376 chr16:29124377 . . 0 22 hm5C_associated_SNPs_93166 0 0 0 2 2 RRN3P2 chr16:29124462 5'GT 29124462 Upstream 86bp
chr19 34942995 34942995 1 + G A PRAD 34942992 + 34942972 34943012 41 CGTCTTTTTTCAAAGAGCATCGAGACTTTGAGAGTTCATTT CGTCTTTTTTCAAAGAGCATCGAAACTTTGAGAGTTCATTT < 41bp 0.706262158630934 0.468528194634386 0.33604544 0.29533923 prediction 0.412524317261869 Functional Loss - UBA2 ENSG00000126261 CDS Human protein_coding chr19:34942992 chr19:34942995 synonymous SNV . 0 24 hm5C_associated_SNPs_93167 0 0 1 0 1 UBA2 chr19:34943052 5'GT 34943052 Upstream 58bp
chr1 154209563 154209563 1 + C T UCEC 154209560 + 154209540 154209580 41 GATGATAACTATGGCAATAGCAGCGGCAATACGTGGAACAA GATGATAACTATGGCAATAGCAGTGGCAATACGTGGAACAA < 41bp 0.764081898880037 0.557820810416129 0.81321895 0.70959425 prediction 0.412522176927815 Functional Loss - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154209560 chr1:154209563 synonymous SNV . 0 24 hm5C_associated_SNPs_93168 0 0 1 0 2 UBAP2L chr1:154209500 3'AG 154209500 Downstream 64bp
chr1 154209563 154209563 1 + C T UCEC 154209560 + 154209540 154209580 41 GATGATAACTATGGCAATAGCAGCGGCAATACGTGGAACAA GATGATAACTATGGCAATAGCAGTGGCAATACGTGGAACAA < 41bp 0.764081898880037 0.557820810416129 0.81321895 0.70959425 prediction 0.412522176927815 Functional Loss - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154209560 chr1:154209563 synonymous SNV . 0 24 hm5C_associated_SNPs_93168 0 0 1 0 2 UBAP2L chr1:154209612 5'GT 154209612 Upstream 50bp
chr9 5745968 5745968 1 + G T SARC 5745966 + 5745946 5745986 41 GGCTATCACCTATGGGTAATCAGCGGATTTGGTTCTCAAAA GGCTATCACCTATGGGTAATCATCGGATTTGGTTCTCAAAA < 41bp 0.706253710490074 0.353297184322872 0.8851936 0.18403691 prediction 0.412507420980149 Functional Loss - RIC1 ENSG00000107036 CDS Human protein_coding chr9:5745966 chr9:5745968 nonsynonymous SNV 0.008 0 23 hm5C_associated_SNPs_93174 0 0 1 0 1 RIC1 chr9:5745931 3'AG 5745931 Downstream 38bp
chr5 54403645 54403645 1 + T C SKCM 54403644 + 54403624 54403664 41 ACAAAAGGTCCCAGGTCATTCTTGGGGCTCACTCAATAACC ACAAAAGGTCCCAGGTCATTCCTGGGGCTCACTCAATAACC < 41bp 0.70625005718516 0.46636215297889 0.11239582 0.16017208 prediction 0.41250011437032 Functional Loss - GZMA ENSG00000145649 CDS Human protein_coding chr5:54403644 chr5:54403645 nonsynonymous SNV 0.978 5 22 hm5C_associated_SNPs_93175 0 0 0 0 1 GZMA chr5:54403622 3'AG 54403622 Downstream 24bp
chr2 37319369 37319369 1 + C T LGG 37319366 + 37319346 37319386 41 AAGGAGATCTCAGAAGAAGCCAGCGAGCCTGTCAACAACTG AAGGAGATCTCAGAAGAAGCCAGTGAGCCTGTCAACAACTG < 41bp 0.729571018826086 0.523321514311575 0.63701093 0.75872856 prediction 0.412499009029023 Functional Loss - GPATCH11 ENSG00000152133 CDS Human protein_coding chr2:37319366 chr2:37319369 stopgain 1.000 1 24 hm5C_associated_SNPs_93176 0 0 1 0 2 GPATCH11 chr2:37319308 3'AG 37319308 Downstream 62bp
chr2 37319369 37319369 1 + C T LGG 37319366 + 37319346 37319386 41 AAGGAGATCTCAGAAGAAGCCAGCGAGCCTGTCAACAACTG AAGGAGATCTCAGAAGAAGCCAGTGAGCCTGTCAACAACTG < 41bp 0.729571018826086 0.523321514311575 0.63701093 0.75872856 prediction 0.412499009029023 Functional Loss - GPATCH11 ENSG00000152133 CDS Human protein_coding chr2:37319366 chr2:37319369 stopgain 1.000 1 24 hm5C_associated_SNPs_93176 0 0 1 0 2 GPATCH11 chr2:37319398 5'GT 37319398 Upstream 30bp
chr1 154293684 154293684 1 + G T SARC 154293680 + 154293660 154293700 41 TCATGGGCCACCTCCGGATACGCAGCCTCCTGGCCCGGCAG TCATGGGCCACCTCCGGATACGCATCCTCCTGGCCCGGCAG < 41bp 0.70624896751538 0.497160821557529 0.40257835 0.22503012 prediction 0.412497935030761 Functional Loss - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154293680 chr1:154293684 nonsynonymous SNV 0.856 2 25 hm5C_associated_SNPs_93177 0 0 0 0 1 AQP10 chr1:154293736 5'GT 154293736 Upstream 53bp
chr12 48134728 48134728 1 - G A rs148525602 48134730 - 48134710 48134750 41 TGGCAGGCCAGCTGACGGACCACGACTGGAGCCTCTTCAAC TGGCAGGCCAGCTGACGGACCATGACTGGAGCCTCTTCAAC < 41bp 0.706243120675389 0.439590656759385 0.06912127 0.07459515 prediction 0.412486241350779 Functional Loss - RAPGEF3 ENSG00000079337 CDS Human protein_coding chr12:48134730 chr12:48134728 synonymous SNV . 0 23 hm5C_associated_SNPs_93180 0 0 0 0 2 RAPGEF3 chr12:48134698 5'GT 48134698 Upstream 31bp
chr12 48134728 48134728 1 - G A rs148525602 48134730 - 48134710 48134750 41 TGGCAGGCCAGCTGACGGACCACGACTGGAGCCTCTTCAAC TGGCAGGCCAGCTGACGGACCATGACTGGAGCCTCTTCAAC < 41bp 0.706243120675389 0.439590656759385 0.06912127 0.07459515 prediction 0.412486241350779 Functional Loss - RAPGEF3 ENSG00000079337 CDS Human protein_coding chr12:48134730 chr12:48134728 synonymous SNV . 0 23 hm5C_associated_SNPs_93180 0 0 0 0 2 RAPGEF3 chr12:48134823 3'AG 48134823 Downstream 96bp
chr16 21968870 21968870 1 + C T UCEC 21968867 + 21968847 21968887 41 ATTTAGGAACCACCCATTTGCTGCGTCTTACATCCAGTCTG ATTTAGGAACCACCCATTTGCTGTGTCTTACATCCAGTCTG < 41bp 0.706241260116411 0.49938219443987 0.07540935 0.08368823 prediction 0.412482520232822 Functional Loss - UQCRC2 ENSG00000140740 CDS Human protein_coding chr16:21968867 chr16:21968870 nonsynonymous SNV 0.981 4 24 hm5C_associated_SNPs_93184 0 0 1 2 1 UQCRC2 chr16:21968887 5'GT 21968887 Upstream 18bp
chr2 73449901 73449901 1 + C T LUSC 73449898 + 73449878 73449918 41 TCCAGGGCCAACTGGAACTTCTGCGGAGACTCTTCACAGAG TCCAGGGCCAACTGGAACTTCTGTGGAGACTCTTCACAGAG < 41bp 0.772244597733314 0.566009607369066 0.6893128 0.44340274 prediction 0.412469980728496 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73449898 chr2:73449901 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_93191 0 0 0 0 2 SMYD5 chr2:73449883 3'AG 73449883 Downstream 19bp
chr2 73449901 73449901 1 + C T LUSC 73449898 + 73449878 73449918 41 TCCAGGGCCAACTGGAACTTCTGCGGAGACTCTTCACAGAG TCCAGGGCCAACTGGAACTTCTGTGGAGACTCTTCACAGAG < 41bp 0.772244597733314 0.566009607369066 0.6893128 0.44340274 prediction 0.412469980728496 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73449898 chr2:73449901 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_93191 0 0 0 0 2 SMYD5 chr2:73449945 5'GT 73449945 Upstream 45bp
chr1 148932910 148932910 1 + C T SKCM 148932907 + 148932887 148932927 41 GGCTCAGTCTGCGGCCAAGACTCCGTCCTGCAAGGTAAGGT GGCTCAGTCTGCGGCCAAGACTCTGTCCTGCAAGGTAAGGT < 41bp 0.732262784507453 0.526031127826474 0.21425274 0.07077852 prediction 0.412463313361957 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932907 chr1:148932910 . . 0 24 hm5C_associated_SNPs_93193 0 0 0 2 1 LOC645166 chr1:148932920 5'GT 148932920 Upstream 11bp
chr9 379854 379854 1 + C T STAD 379851 + 379831 379871 41 GCAAGGACCTGAGCAAGGACCAGCATGGGAGGAACTGCCTG GCAAGGACCTGAGCAAGGACCAGTATGGGAGGAACTGCCTG < 41bp 0.736909679416468 0.530680738913207 0.083162636 0.11267769 prediction 0.412457881006524 Functional Loss - DOCK8 ENSG00000107099 CDS Human protein_coding chr9:379851 chr9:379854 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_93194 0 0 1 0 2 DOCK8 chr9:379771 3'AG 379771 Downstream 84bp
chr9 379854 379854 1 + C T STAD 379851 + 379831 379871 41 GCAAGGACCTGAGCAAGGACCAGCATGGGAGGAACTGCCTG GCAAGGACCTGAGCAAGGACCAGTATGGGAGGAACTGCCTG < 41bp 0.736909679416468 0.530680738913207 0.083162636 0.11267769 prediction 0.412457881006524 Functional Loss - DOCK8 ENSG00000107099 CDS Human protein_coding chr9:379851 chr9:379854 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_93194 0 0 1 0 2 DOCK8 chr9:379935 5'GT 379935 Upstream 82bp
chrX 140926144 140926144 1 + G T UCEC 140926140 + 140926120 140926160 41 TGGGTGTTGGATGCCACCTTCAGTGATGGCAGTCTAGGCCA TGGGTGTTGGATGCCACCTTCAGTTATGGCAGTCTAGGCCA < 41bp 0.74534218912423 0.539113637697465 0.4565363 0.30116695 prediction 0.412457102853531 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140926140 chrX:140926144 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_93195 0 0 0 0 1 MAGEC3 chrX:140926224 5'GT 140926224 Upstream 81bp
chr4 100518317 100518317 1 + C T BRCA 100518314 + 100518294 100518334 41 GAAACTTCCTGGCCTTCATTCAGCACCTCAGGACTGCGAAG GAAACTTCCTGGCCTTCATTCAGTACCTCAGGACTGCGAAG < 41bp 0.706226190933087 0.484030220497841 0.74062514 0.4287337 prediction 0.412452381866173 Functional Loss - MTTP ENSG00000138823 CDS Human protein_coding chr4:100518314 chr4:100518317 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_93198 0 0 1 0 2 MTTP chr4:100518224 3'AG 100518224 Downstream 94bp
chr4 100518317 100518317 1 + C T BRCA 100518314 + 100518294 100518334 41 GAAACTTCCTGGCCTTCATTCAGCACCTCAGGACTGCGAAG GAAACTTCCTGGCCTTCATTCAGTACCTCAGGACTGCGAAG < 41bp 0.706226190933087 0.484030220497841 0.74062514 0.4287337 prediction 0.412452381866173 Functional Loss - MTTP ENSG00000138823 CDS Human protein_coding chr4:100518314 chr4:100518317 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_93198 0 0 1 0 2 MTTP chr4:100518381 5'GT 100518381 Upstream 65bp
chr19 1220416 1220416 1 + A C LUAD 1220415 + 1220395 1220435 41 GCCTGGAGTACCTGCATAGCCAGGGCATTGTGCACAAGGAC GCCTGGAGTACCTGCATAGCCCGGGCATTGTGCACAAGGAC < 41bp 0.843582184468558 0.63735635244589 0.85097754 0.3620584 prediction 0.412451664045337 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1220415 chr19:1220416 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_93199 0 0 1 0 2 STK11 chr19:1220372 3'AG 1220372 Downstream 45bp
chr19 1220416 1220416 1 + A C LUAD 1220415 + 1220395 1220435 41 GCCTGGAGTACCTGCATAGCCAGGGCATTGTGCACAAGGAC GCCTGGAGTACCTGCATAGCCCGGGCATTGTGCACAAGGAC < 41bp 0.843582184468558 0.63735635244589 0.85097754 0.3620584 prediction 0.412451664045337 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1220415 chr19:1220416 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_93199 0 0 1 0 2 STK11 chr19:1220504 5'GT 1220504 Upstream 89bp
chr19 55098691 55098691 1 + G A SKCM 55098688 + 55098668 55098708 41 CATCCCTAGGCCAACACCCCCAGGATTACACAGTGGAGAAT CATCCCTAGGCCAACACCCCCAGAATTACACAGTGGAGAAT < 41bp 0.802632317467486 0.596407277436164 0.90454817 0.89141 prediction 0.412450080062643 Functional Loss - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55098688 chr19:55098691 nonsynonymous SNV 0.199 3 24 hm5C_associated_SNPs_93200 0 0 0 0 1 LILRA2 chr19:55098668 3'AG 55098668 Downstream 24bp
chr10 33134532 33134532 1 + G A BLCA 33134529 + 33134509 33134549 41 GGTCTAATGAAGGAGTCAACCACGACACAATTAAAAAGTCA GGTCTAATGAAGGAGTCAACCACAACACAATTAAAAAGTCA < 41bp 0.749292644912431 0.543070765298423 0.22205779 0.36106884 prediction 0.412443759228016 Functional Loss - CCDC7 ENSG00000150076 CDS Human other chr10:33134529 chr10:33134532 synonymous SNV . 0 24 hm5C_associated_SNPs_93203 0 0 0 1 2 CCDC7 chr10:33134471 3'AG 33134471 Downstream 62bp
chr10 33134532 33134532 1 + G A BLCA 33134529 + 33134509 33134549 41 GGTCTAATGAAGGAGTCAACCACGACACAATTAAAAAGTCA GGTCTAATGAAGGAGTCAACCACAACACAATTAAAAAGTCA < 41bp 0.749292644912431 0.543070765298423 0.22205779 0.36106884 prediction 0.412443759228016 Functional Loss - CCDC7 ENSG00000150076 CDS Human other chr10:33134529 chr10:33134532 synonymous SNV . 0 24 hm5C_associated_SNPs_93203 0 0 0 1 2 CCDC7 chr10:33134554 5'GT 33134554 Upstream 23bp
chr5 145609455 145609455 1 + G T UCEC 145609452 + 145609432 145609472 41 GTAGGGGGCGCAGCAAAGACCGGGATCCAAATAGGAATGTT GTAGGGGGCGCAGCAAAGACCGGTATCCAAATAGGAATGTT < 41bp 0.933955034612544 0.72773351777064 0.81419235 0.2314983 prediction 0.412443033683808 Functional Loss - RBM27 ENSG00000091009 CDS Human protein_coding chr5:145609452 chr5:145609455 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_93204 0 0 1 0 1 RBM27 chr5:145609473 5'GT 145609473 Upstream 19bp
chr7 142565776 142565776 1 + G A rs2229873 142565773 + 142565753 142565793 41 AAGCGGCGTGGGACTGGCTACACGGAGCAGCTGCAGCAATA AAGCGGCGTGGGACTGGCTACACAGAGCAGCTGCAGCAATA < 41bp 0.706218147608933 0.459260972470927 0.568333 0.1996769 prediction 0.412436295217866 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142565773 chr7:142565776 synonymous SNV . 0 24 hm5C_associated_SNPs_93208 0 0 0 0 2 EPHB6 chr7:142565752 3'AG 142565752 Downstream 25bp
chr7 142565776 142565776 1 + G A rs2229873 142565773 + 142565753 142565793 41 AAGCGGCGTGGGACTGGCTACACGGAGCAGCTGCAGCAATA AAGCGGCGTGGGACTGGCTACACAGAGCAGCTGCAGCAATA < 41bp 0.706218147608933 0.459260972470927 0.568333 0.1996769 prediction 0.412436295217866 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142565773 chr7:142565776 synonymous SNV . 0 24 hm5C_associated_SNPs_93208 0 0 0 0 2 EPHB6 chr7:142565804 5'GT 142565804 Upstream 29bp
chr16 1128917 1128917 1 + C T SKCM 1128915 + 1128895 1128935 41 GCCCAGCTGGAACGCCTCCTCCCCGGGGGCTGCCTCTGGAG GCCCAGCTGGAACGCCTCCTCCTCGGGGGCTGCCTCTGGAG < 41bp 0.748913793855196 0.542695698208634 0.09921831 0.09806761 prediction 0.412436191293125 Functional Loss - SSTR5 ENSG00000162009 CDS Human protein_coding chr16:1128915 chr16:1128917 nonsynonymous SNV 0.014 0 23 hm5C_associated_SNPs_93209 0 0 0 0 1 SSTR5 chr16:1128842 3'AG 1128842 Downstream 76bp
chr17 78220002 78220002 1 + G A LIHC 78219999 + 78219979 78220019 41 TGTGCACCCCGGCGGGGGGCCTGGTGACGGGTAAGGCCCCC TGTGCACCCCGGCGGGGGGCCTGATGACGGGTAAGGCCCCC < 41bp 0.814313821524973 0.608098059197454 0.83222824 0.40476274 prediction 0.412431524655038 Functional Loss - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78219999 chr17:78220002 nonsynonymous SNV 0.888 1 24 hm5C_associated_SNPs_93211 0 0 1 0 2 SLC26A11 chr17:78219953 3'AG 78219953 Downstream 50bp
chr17 78220002 78220002 1 + G A LIHC 78219999 + 78219979 78220019 41 TGTGCACCCCGGCGGGGGGCCTGGTGACGGGTAAGGCCCCC TGTGCACCCCGGCGGGGGGCCTGATGACGGGTAAGGCCCCC < 41bp 0.814313821524973 0.608098059197454 0.83222824 0.40476274 prediction 0.412431524655038 Functional Loss - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78219999 chr17:78220002 nonsynonymous SNV 0.888 1 24 hm5C_associated_SNPs_93211 0 0 1 0 2 SLC26A11 chr17:78220008 5'GT 78220008 Upstream 7bp
chr12 72416230 72416230 1 + C T STAD 72416227 + 72416207 72416247 41 TTTGCAAGCAAGAAGGGCAACTGCGGGCATATGGAGCAGGA TTTGCAAGCAAGAAGGGCAACTGTGGGCATATGGAGCAGGA < 41bp 0.706214409938844 0.4750289404635 0.30866218 0.1546416 prediction 0.412428819877688 Functional Loss - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72416227 chr12:72416230 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_93212 0 0 0 0 2 TPH2 chr12:72416179 3'AG 72416179 Downstream 52bp
chr12 72416230 72416230 1 + C T STAD 72416227 + 72416207 72416247 41 TTTGCAAGCAAGAAGGGCAACTGCGGGCATATGGAGCAGGA TTTGCAAGCAAGAAGGGCAACTGTGGGCATATGGAGCAGGA < 41bp 0.706214409938844 0.4750289404635 0.30866218 0.1546416 prediction 0.412428819877688 Functional Loss - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72416227 chr12:72416230 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_93212 0 0 0 0 2 TPH2 chr12:72416274 5'GT 72416274 Upstream 45bp
chr17 4435864 4435864 1 + G T UCEC 4435860 + 4435840 4435880 41 TCCCCTGTCCTGGGCATGATCACAGGAACACTCATCCTCAT TCCCCTGTCCTGGGCATGATCACATGAACACTCATCCTCAT < 41bp 0.706212958349096 0.496244668423055 0.9290332 0.33640844 prediction 0.412425916698193 Functional Loss - SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4435860 chr17:4435864 stopgain 1.000 1 25 hm5C_associated_SNPs_93213 0 0 0 0 1 SPNS2 chr17:4435837 3'AG 4435837 Downstream 28bp
chr5 118862895 118862895 1 + G T COAD 118862893 + 118862873 118862913 41 GAGATGTGGAAGGAAGGAAACAGAATTCATTTTCAAACCAA GAGATGTGGAAGGAAGGAAACATAATTCATTTTCAAACCAA < 41bp 0.706212683891308 0.387897652469228 0.2638632 0.30822176 prediction 0.412425367782615 Functional Loss - HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118862893 chr5:118862895 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_93214 0 0 1 0 2 HSD17B4 chr5:118862828 3'AG 118862828 Downstream 68bp
chr5 118862895 118862895 1 + G T COAD 118862893 + 118862873 118862913 41 GAGATGTGGAAGGAAGGAAACAGAATTCATTTTCAAACCAA GAGATGTGGAAGGAAGGAAACATAATTCATTTTCAAACCAA < 41bp 0.706212683891308 0.387897652469228 0.2638632 0.30822176 prediction 0.412425367782615 Functional Loss - HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118862893 chr5:118862895 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_93214 0 0 1 0 2 HSD17B4 chr5:118862914 5'GT 118862914 Upstream 20bp
chr8 23113998 23113998 1 + G A UCEC 23113995 + 23113975 23114015 41 TGTGAAGTTTGCCCGAGGGCCACGTGCCAAGGTCTCTCCAG TGTGAAGTTTGCCCGAGGGCCACATGCCAAGGTCTCTCCAG < 41bp 0.706205455718683 0.454307922036797 0.1812836 0.08918545 prediction 0.412410911437365 Functional Loss - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23113995 chr8:23113998 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_93219 0 0 0 3 1 CHMP7 chr8:23113973 3'AG 23113973 Downstream 26bp
chr9 101797434 101797434 1 + G C BLCA 101797433 + 101797413 101797453 41 TGCACAATGGGACTTGGATTCGAGGTACTTTTCCCCTTTTC TGCACAATGGGACTTGGATTCCAGGTACTTTTCCCCTTTTC < 41bp 0.70620351645724 0.388381361661678 0.91988516 0.8192166 prediction 0.412407032914481 Functional Loss - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101797433 chr9:101797434 nonsynonymous SNV 0.956 1 22 hm5C_associated_SNPs_93221 0 0 0 0 1 COL15A1 chr9:101797436 5'GT 101797436 Upstream 3bp
chrX 153660741 153660741 1 + C T COAD 153660738 + 153660718 153660758 41 TGCATGTGGACCTGGCCACCCTGCGGGAGCTGAAGCTCAAT TGCATGTGGACCTGGCCACCCTGTGGGAGCTGAAGCTCAAT < 41bp 0.706199870531573 0.494324509556506 0.48579487 0.39652684 prediction 0.412399741063145 Functional Loss - ATP6AP1 ENSG00000071553 CDS Human protein_coding chrX:153660738 chrX:153660741 nonsynonymous SNV 0.654 2 24 hm5C_associated_SNPs_93223 0 0 1 0 1 ATP6AP1 chrX:153660805 5'GT 153660805 Upstream 65bp
chr2 71748019 71748019 1 + T C rs571559303 71748018 + 71747998 71748038 41 AAGCCTTTGTGTGCTGGGGCCTGGGGACGAAGCGCCTGTGA AAGCCTTTGTGTGCTGGGGCCCGGGGACGAAGCGCCTGTGA < 41bp 0.724383250729041 0.518183542593424 0.54750764 0.8051559 prediction 0.412399416271232 Functional Loss - DYSF ENSG00000135636 CDS Human protein_coding chr2:71748018 chr2:71748019 synonymous SNV . 0 22 hm5C_associated_SNPs_93224 1 0 0 0 1 DYSF chr2:71748034 5'GT 71748034 Upstream 16bp
chr8 10387070 10387070 1 + G T UCEC 10387066 + 10387046 10387086 41 AGAACTCGGTATTCCAGAATCACAGGGGGGATGGAGGCGGA AGAACTCGGTATTCCAGAATCACATGGGGGATGGAGGCGGA < 41bp 0.706199417467064 0.495819228183195 0.8992817 0.6377542 prediction 0.412398834934129 Functional Loss - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10387066 chr8:10387070 nonsynonymous SNV 0.333 4 25 hm5C_associated_SNPs_93225 0 0 0 0 1 PRSS55 chr8:10387017 3'AG 10387017 Downstream 54bp
chr19 5759140 5759140 1 + C T LUSC 5759138 + 5759118 5759158 41 CAGCACTGGGGCAGGACCGACTCCAACTTCACTTCCAGGTA CAGCACTGGGGCAGGACCGACTTCAACTTCACTTCCAGGTA < 41bp 0.706195867816644 0.404332174781813 0.9452255 0.06890261 prediction 0.412391735633288 Functional Loss - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5759138 chr19:5759140 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_93226 0 0 0 0 2 CATSPERD chr19:5759097 3'AG 5759097 Downstream 44bp
chr19 5759140 5759140 1 + C T LUSC 5759138 + 5759118 5759158 41 CAGCACTGGGGCAGGACCGACTCCAACTTCACTTCCAGGTA CAGCACTGGGGCAGGACCGACTTCAACTTCACTTCCAGGTA < 41bp 0.706195867816644 0.404332174781813 0.9452255 0.06890261 prediction 0.412391735633288 Functional Loss - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5759138 chr19:5759140 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_93226 0 0 0 0 2 CATSPERD chr19:5759155 5'GT 5759155 Upstream 16bp
chr1 203472100 203472100 1 + G T LIHC 203472096 + 203472076 203472116 41 ACAACCTGCTGGATTCTATCCCGGGGCCTTTGCCCCTGAGC ACAACCTGCTGGATTCTATCCCGGTGCCTTTGCCCCTGAGC < 41bp 0.706193577077147 0.497434476794638 0.9468884 0.90617436 prediction 0.412387154154294 Functional Loss - OPTC ENSG00000188770 CDS Human protein_coding chr1:203472096 chr1:203472100 nonsynonymous SNV 0.527 0 25 hm5C_associated_SNPs_93228 0 0 0 0 2 OPTC chr1:203472042 3'AG 203472042 Downstream 59bp
chr1 203472100 203472100 1 + G T LIHC 203472096 + 203472076 203472116 41 ACAACCTGCTGGATTCTATCCCGGGGCCTTTGCCCCTGAGC ACAACCTGCTGGATTCTATCCCGGTGCCTTTGCCCCTGAGC < 41bp 0.706193577077147 0.497434476794638 0.9468884 0.90617436 prediction 0.412387154154294 Functional Loss - OPTC ENSG00000188770 CDS Human protein_coding chr1:203472096 chr1:203472100 nonsynonymous SNV 0.527 0 25 hm5C_associated_SNPs_93228 0 0 0 0 2 OPTC chr1:203472137 5'GT 203472137 Upstream 38bp
chr7 2559914 2559914 1 + G A LUAD 2559911 + 2559891 2559931 41 GCTGCTGGAGACCTGGATCTCGCGCCACAAGGAGATGGTGA GCTGCTGGAGACCTGGATCTCGCACCACAAGGAGATGGTGA < 41bp 0.706191785326046 0.461920498312094 0.82080746 0.4297892 prediction 0.412383570652092 Functional Loss - LFNG ENSG00000106003 CDS Human protein_coding chr7:2559911 chr7:2559914 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_93229 0 0 0 0 1 LFNG chr7:2559927 5'GT 2559927 Upstream 14bp
chr1 177226508 177226508 1 + G A SKCM 177226505 + 177226485 177226525 41 CTGCACCATATCCAGATAGCCACGGGGGCCATCAAGGTAAT CTGCACCATATCCAGATAGCCACAGGGGCCATCAAGGTAAT < 41bp 0.706191748315247 0.465449424297204 0.69471836 0.85116494 prediction 0.412383496630494 Functional Loss - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177226505 chr1:177226508 synonymous SNV . 0 24 hm5C_associated_SNPs_93230 0 0 0 0 1 BRINP2 chr1:177226520 5'GT 177226520 Upstream 13bp
chr19 49636538 49636538 1 + C T LUSC 49636535 + 49636515 49636555 41 CTGGCCGAGTGGTTGGACGACGCCAAGCAGAAGCTGCAGCA CTGGCCGAGTGGTTGGACGACGCTAAGCAGAAGCTGCAGCA < 41bp 0.70618880877191 0.481368660315577 0.26198614 0.16337872 prediction 0.412377617543821 Functional Loss - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49636535 chr19:49636538 synonymous SNV . 0 24 hm5C_associated_SNPs_93234 0 0 0 0 1 PPFIA3 chr19:49636628 5'GT 49636628 Upstream 91bp
chr6 28254889 28254889 1 + G C LUAD 28254885 + 28254865 28254905 41 CCCCACGGATCAGCTCATCTCCAGGAAAAAAACCCCAGAGA CCCCACGGATCAGCTCATCTCCAGCAAAAAAACCCCAGAGA < 41bp 0.7061802377668 0.405577677017114 0.8174219 0.101968944 prediction 0.412360475533599 Functional Loss - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28254885 chr6:28254889 nonsynonymous SNV 0.743 1 25 hm5C_associated_SNPs_93239 0 0 1 0 2 PGBD1 chr6:28254857 3'AG 28254857 Downstream 33bp
chr6 28254889 28254889 1 + G C LUAD 28254885 + 28254865 28254905 41 CCCCACGGATCAGCTCATCTCCAGGAAAAAAACCCCAGAGA CCCCACGGATCAGCTCATCTCCAGCAAAAAAACCCCAGAGA < 41bp 0.7061802377668 0.405577677017114 0.8174219 0.101968944 prediction 0.412360475533599 Functional Loss - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28254885 chr6:28254889 nonsynonymous SNV 0.743 1 25 hm5C_associated_SNPs_93239 0 0 1 0 2 PGBD1 chr6:28254945 5'GT 28254945 Upstream 57bp
chr17 77705076 77705076 1 + C T LUSC 77705074 + 77705054 77705094 41 CCCCAACCTGGACGCCATGGCCCGAGACGGGGTGAAGGCAC CCCCAACCTGGACGCCATGGCCTGAGACGGGGTGAAGGCAC < 41bp 0.835574849667842 0.629403363648911 0.027253449 0.062288642 prediction 0.412342972037861 Functional Loss - ENPP7 ENSG00000182156 CDS Human protein_coding chr17:77705074 chr17:77705076 stopgain 0.032 0 23 hm5C_associated_SNPs_93242 0 0 0 0 1 ENPP7 chr17:77705154 5'GT 77705154 Upstream 79bp
chr8 144296897 144296897 1 + G T LIHC 144296893 + 144296873 144296913 41 CCGCCTTGTCCCCAGTGCTGCTGCGGTGCTACACCTGCAAG CCGCCTTGTCCCCAGTGCTGCTGCTGTGCTACACCTGCAAG < 41bp 0.706170961825682 0.492444093549575 0.70246005 0.20559242 prediction 0.412341923651364 Functional Loss - GPIHBP1 ENSG00000182851 CDS Human other chr8:144296893 chr8:144296897 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_93243 0 0 0 0 1 GPIHBP1 chr8:144296888 3'AG 144296888 Downstream 10bp
chr12 102036311 102036311 1 + C T GBM 102036309 + 102036289 102036329 41 AGTATGGAATCACCGACCTGCGCGGCATGCTCAAGCGACTC AGTATGGAATCACCGACCTGCGTGGCATGCTCAAGCGACTC < 41bp 0.70617073758908 0.443692041448386 0.05161017 0.08129671 prediction 0.412341475178159 Functional Loss - MYBPC1 ENSG00000196091 CDS Human protein_coding chr12:102036309 chr12:102036311 synonymous SNV . 0 23 hm5C_associated_SNPs_93244 0 0 0 0 1 MYBPC1 chr12:102036363 5'GT 102036363 Upstream 53bp
chr20 39974568 39974568 1 + C T UCEC 39974566 + 39974546 39974586 41 GTGGTGAAGCAGGTGGACGGCTCGTTCCGGTGCTCACCCTT GTGGTGAAGCAGGTGGACGGCTTGTTCCGGTGCTCACCCTT < 41bp 0.706167108065931 0.423689796019379 0.053011864 0.082077086 prediction 0.412334216131862 Functional Loss - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39974566 chr20:39974568 nonsynonymous SNV 0.130 4 23 hm5C_associated_SNPs_93246 0 0 0 0 1 LPIN3 chr20:39974635 5'GT 39974635 Upstream 68bp
chr5 1244383 1244383 1 + G A SKCM 1244380 + 1244360 1244400 41 CACCTGCTTCACGCTGCAGTCTGGGAACTACTGGCTGGAGA CACCTGCTTCACGCTGCAGTCTGAGAACTACTGGCTGGAGA < 41bp 0.80774898701324 0.601582380572778 0.26462057 0.07041839 prediction 0.412333212880923 Functional Loss - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1244380 chr5:1244383 nonsynonymous SNV 0.987 5 24 hm5C_associated_SNPs_93247 0 0 0 0 1 SLC6A18 chr5:1244329 3'AG 1244329 Downstream 55bp
chr2 226516205 226516205 1 + C T LUSC 226516202 + 226516182 226516222 41 GTCGACGTCAGGTGTGCCTCCTCCATCAGTCACTCCCCTCA GTCGACGTCAGGTGTGCCTCCTCTATCAGTCACTCCCCTCA < 41bp 0.769034135112937 0.56286800828251 0.9510297 0.93413436 prediction 0.412332253660855 Functional Loss - NYAP2 ENSG00000144460 CDS Human protein_coding chr2:226516202 chr2:226516205 nonsynonymous SNV 0.484 3 24 hm5C_associated_SNPs_93248 0 0 0 1 2 NYAP2 chr2:226516148 3'AG 226516148 Downstream 58bp
chr2 226516205 226516205 1 + C T LUSC 226516202 + 226516182 226516222 41 GTCGACGTCAGGTGTGCCTCCTCCATCAGTCACTCCCCTCA GTCGACGTCAGGTGTGCCTCCTCTATCAGTCACTCCCCTCA < 41bp 0.769034135112937 0.56286800828251 0.9510297 0.93413436 prediction 0.412332253660855 Functional Loss - NYAP2 ENSG00000144460 CDS Human protein_coding chr2:226516202 chr2:226516205 nonsynonymous SNV 0.484 3 24 hm5C_associated_SNPs_93248 0 0 0 1 2 NYAP2 chr2:226516251 5'GT 226516251 Upstream 47bp
chr19 55377852 55377852 1 + C T UCEC 55377849 + 55377829 55377869 41 TGCTGTAATGGACCAAGAGCCTGCGGGGGACAGAACAGTGA TGCTGTAATGGACCAAGAGCCTGTGGGGGACAGAACAGTGA < 41bp 0.706164541098596 0.486611201014919 0.3992539 0.30967683 prediction 0.412329082197192 Functional Loss - KIR3DL2 ENSG00000167633;ENSG00000240403 CDS Human other chr19:55377849 chr19:55377852 nonsynonymous SNV 0.000 3 24 hm5C_associated_SNPs_93251 0 0 0 0 2 KIR3DL2 chr19:55377825 3'AG 55377825 Downstream 28bp
chr19 55377852 55377852 1 + C T UCEC 55377849 + 55377829 55377869 41 TGCTGTAATGGACCAAGAGCCTGCGGGGGACAGAACAGTGA TGCTGTAATGGACCAAGAGCCTGTGGGGGACAGAACAGTGA < 41bp 0.706164541098596 0.486611201014919 0.3992539 0.30967683 prediction 0.412329082197192 Functional Loss - KIR3DL2 ENSG00000167633;ENSG00000240403 CDS Human other chr19:55377849 chr19:55377852 nonsynonymous SNV 0.000 3 24 hm5C_associated_SNPs_93251 0 0 0 0 2 KIR3DL2 chr19:55377877 5'GT 55377877 Upstream 26bp
chr1 161681777 161681777 1 + G T STAD 161681775 + 161681755 161681795 41 ACCCTCAGCTGAACCCCAAGCAGGAAGCCCCATGACCCTGA ACCCTCAGCTGAACCCCAAGCATGAAGCCCCATGACCCTGA < 41bp 0.917574917745987 0.711414797933266 0.9358912 0.890924 prediction 0.412320239625443 Functional Loss - FCRLA ENSG00000132185 CDS Human protein_coding chr1:161681775 chr1:161681777 stopgain 0.096 1 23 hm5C_associated_SNPs_93252 0 0 0 0 1 FCRLA chr1:161681724 3'AG 161681724 Downstream 54bp
chr5 129100595 129100595 1 + C T rs183670124 129100592 + 129100572 129100612 41 TTTAGGAAAATCCTAATGACCTGCGGTTTTGGTTGGGAGAC TTTAGGAAAATCCTAATGACCTGTGGTTTTGGTTGGGAGAC < 41bp 0.706154474793624 0.494621293921337 0.07799578 0.058062226 prediction 0.412308949587248 Functional Loss - KIAA1024L ENSG00000186367 CDS Human protein_coding chr5:129100592 chr5:129100595 nonsynonymous SNV 0.985 1 24 hm5C_associated_SNPs_93253 0 0 0 0 1 KIAA1024L chr5:129100577 3'AG 129100577 Downstream 19bp
chr20 34487510 34487510 1 + G T UCEC 34487508 + 34487488 34487528 41 TGTCCAAACCAGGGGCCCTTCAGCTTCAGACAAGCCCAGCC TGTCCAAACCAGGGGCCCTTCATCTTCAGACAAGCCCAGCC < 41bp 0.706151633482785 0.349910431432461 0.2679265 0.173403 prediction 0.412303266965571 Functional Loss - PHF20 ENSG00000025293 CDS Human protein_coding chr20:34487508 chr20:34487510 nonsynonymous SNV 0.957 1 23 hm5C_associated_SNPs_93254 0 0 1 0 1 PHF20 chr20:34487570 5'GT 34487570 Upstream 61bp
chr12 57894287 57894287 1 + C T SKCM 57894284 + 57894264 57894304 41 TGTGACAAGTGTGGCAAGCTCATCAATGCTGTCGAGCTTAA TGTGACAAGTGTGGCAAGCTCATTAATGCTGTCGAGCTTAA < 41bp 0.706151426801836 0.48257923690686 0.10372567 0.13159347 prediction 0.412302853603672 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57894284 chr12:57894287 synonymous SNV . 0 24 hm5C_associated_SNPs_93255 0 0 1 0 1 MARS chr12:57894305 5'GT 57894305 Upstream 19bp
chr20 30363784 30363784 1 + T C UCEC 30363783 + 30363763 30363803 41 ATTCAAGAAACTTGCTCTGGCTGGAATAGGTGAGCTTGGCT ATTCAAGAAACTTGCTCTGGCCGGAATAGGTGAGCTTGGCT < 41bp 0.816232598120898 0.610081759949082 0.13504675 0.37554243 prediction 0.412301676343632 Functional Loss - TPX2 ENSG00000088325 CDS Human protein_coding chr20:30363783 chr20:30363784 synonymous SNV . 0 22 hm5C_associated_SNPs_93256 0 0 1 0 1 TPX2 chr20:30363791 5'GT 30363791 Upstream 8bp
chr17 76067190 76067190 1 + G A SKCM 76067187 + 76067167 76067207 41 GCATGAAGACGTCTGGCAAGCAGGATGAGGCCTGGATCATG GCATGAAGACGTCTGGCAAGCAGAATGAGGCCTGGATCATG < 41bp 0.811995314964741 0.605844987748107 0.85187566 0.63094676 prediction 0.412300654433267 Functional Loss - TNRC6C ENSG00000078687 CDS Human protein_coding chr17:76067187 chr17:76067190 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_93257 0 0 1 0 2 TNRC6C chr17:76067166 3'AG 76067166 Downstream 25bp
chr17 76067190 76067190 1 + G A SKCM 76067187 + 76067167 76067207 41 GCATGAAGACGTCTGGCAAGCAGGATGAGGCCTGGATCATG GCATGAAGACGTCTGGCAAGCAGAATGAGGCCTGGATCATG < 41bp 0.811995314964741 0.605844987748107 0.85187566 0.63094676 prediction 0.412300654433267 Functional Loss - TNRC6C ENSG00000078687 CDS Human protein_coding chr17:76067187 chr17:76067190 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_93257 0 0 1 0 2 TNRC6C chr17:76067246 5'GT 76067246 Upstream 57bp
chr11 88242020 88242020 1 + C T COAD 88242018 + 88241998 88242038 41 TGCGCCCCTGCCGCGGGCTGCGCGCCTCCCGTGACTTCGAT TGCGCCCCTGCCGCGGGCTGCGTGCCTCCCGTGACTTCGAT < 41bp 0.779070054511487 0.572920697986929 0.113951445 0.22242531 prediction 0.412298713049116 Functional Loss - GRM5 ENSG00000168959 CDS Human protein_coding chr11:88242018 chr11:88242020 nonsynonymous SNV 0.215 1 23 hm5C_associated_SNPs_93260 0 0 0 0 1 GRM5 chr11:88242107 5'GT 88242107 Upstream 88bp
chr12 7480898 7480898 1 + G T COAD 7480895 + 7480875 7480915 41 TCAATTAGGTGGAATTTGTTCAAGAACTCCCAAAGACAATC TCAATTAGGTGGAATTTGTTCAATAACTCCCAAAGACAATC < 41bp 0.706139451371204 0.322957920721207 0.063976526 0.04058844 prediction 0.412278902742409 Functional Loss - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7480895 chr12:7480898 stopgain 0.986 0 24 hm5C_associated_SNPs_93267 0 0 0 0 1 ACSM4 chr12:7480883 3'AG 7480883 Downstream 16bp
chr10 103908158 103908158 1 + G A UCEC 103908155 + 103908135 103908175 41 CTGTAGTTCCTCTGGACGTTCTCGAAGATGCTCTTCCTCTT CTGTAGTTCCTCTGGACGTTCTCAAAGATGCTCTTCCTCTT < 41bp 0.821667611967252 0.615534652580065 0.42387003 0.3723244 prediction 0.412265918774374 Functional Loss - PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103908155 chr10:103908158 nonsynonymous SNV 0.980 3 24 hm5C_associated_SNPs_93270 0 0 1 0 1 PPRC1 chr10:103908129 3'AG 103908129 Downstream 30bp
chr16 67578714 67578714 1 + G A LGG 67578711 + 67578691 67578731 41 TTCAGCAGGCGGTGGGAGATCCCGGCCAGCTCTGCCCAGGA TTCAGCAGGCGGTGGGAGATCCCAGCCAGCTCTGCCCAGGA < 41bp 0.706132079014231 0.451864790921509 0.8456067 0.69549924 prediction 0.412264158028463 Functional Loss - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578711 chr16:67578714 synonymous SNV . 0 24 hm5C_associated_SNPs_93271 0 0 1 0 1 RIPOR1 chr16:67578733 5'GT 67578733 Upstream 20bp
chr12 266837 266837 1 + A C COAD 266833 + 266813 266853 41 AGCCTGACCGGAAGATGATGCTGGAGGACTTCATCCGAAAC AGCCTGACCGGAAGATGATGCTGGCGGACTTCATCCGAAAC < 41bp 0.706130732210218 0.286872862549287 0.5076462 0.5881699 prediction 0.412261464420436 Functional Loss - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:266833 chr12:266837 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_93272 0 0 0 0 1 IQSEC3 chr12:266860 5'GT 266860 Upstream 24bp
chr20 34129923 34129923 1 + G T LUAD 34129921 + 34129901 34129941 41 GACTTCCGGGTCAAGACCTGCGGGGGCGCCACCGGTAGGCC GACTTCCGGGTCAAGACCTGCGTGGGCGCCACCGGTAGGCC < 41bp 0.921405979759305 0.715275265679048 0.9316968 0.83827245 prediction 0.412261428160514 Functional Loss - ERGIC3 ENSG00000125991 CDS Human protein_coding chr20:34129921 chr20:34129923 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_93273 0 0 1 0 1 ERGIC3 chr20:34129934 5'GT 34129934 Upstream 12bp
chr5 137518143 137518143 1 + G A UCEC 137518140 + 137518120 137518160 41 ACTAACTCAGGGAAAACCCACACGATTCAAGGTGAGTAGTA ACTAACTCAGGGAAAACCCACACAATTCAAGGTGAGTAGTA < 41bp 0.798266885739293 0.592137239220125 0.18700305 0.04275918 prediction 0.412259293038336 Functional Loss - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137518140 chr5:137518143 synonymous SNV . 0 24 hm5C_associated_SNPs_93274 0 0 1 0 1 KIF20A chr5:137518150 5'GT 137518150 Upstream 8bp
chr7 120385840 120385840 1 + G A SKCM 120385837 + 120385817 120385857 41 TTACAACTGTGGAACAGAATCACGAGTTTGTGGACGAACAA TTACAACTGTGGAACAGAATCACAAGTTTGTGGACGAACAA < 41bp 0.748713422182977 0.542583892559338 0.41123807 0.16646907 prediction 0.412259059247277 Functional Loss - KCND2 ENSG00000184408 CDS Human protein_coding chr7:120385837 chr7:120385840 nonsynonymous SNV 0.918 4 24 hm5C_associated_SNPs_93275 0 0 0 0 1 KCND2 chr7:120385834 3'AG 120385834 Downstream 7bp
chr2 111887732 111887732 1 + A C rs184006090 111887728 + 111887708 111887748 41 GTCTCACTCTGTCACCCAGGCTGGAGTGCACTGGTGCGATC GTCTCACTCTGTCACCCAGGCTGGCGTGCACTGGTGCGATC < 41bp 0.706129410876024 0.362068902824834 0.42170385 0.29812956 prediction 0.412258821752047 Functional Loss - BCL2L11 ENSG00000153094 CDS Human protein_coding chr2:111887728 chr2:111887732 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_93276 0 0 0 0 1 BCL2L11 chr2:111887709 3'AG 111887709 Downstream 24bp
chr19 30313167 30313167 1 + G T LIHC 30313165 + 30313145 30313185 41 AGCTGTTGGATCTCTGTGTCCTGGATGTTGACTGCCTTGAA AGCTGTTGGATCTCTGTGTCCTTGATGTTGACTGCCTTGAA < 41bp 0.910874327366679 0.704746914724054 0.25477493 0.040702105 prediction 0.41225482528525 Functional Loss - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30313165 chr19:30313167 synonymous SNV . 0 23 hm5C_associated_SNPs_93279 0 0 1 0 2 CCNE1 chr19:30313147 3'AG 30313147 Downstream 21bp
chr19 30313167 30313167 1 + G T LIHC 30313165 + 30313145 30313185 41 AGCTGTTGGATCTCTGTGTCCTGGATGTTGACTGCCTTGAA AGCTGTTGGATCTCTGTGTCCTTGATGTTGACTGCCTTGAA < 41bp 0.910874327366679 0.704746914724054 0.25477493 0.040702105 prediction 0.41225482528525 Functional Loss - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30313165 chr19:30313167 synonymous SNV . 0 23 hm5C_associated_SNPs_93279 0 0 1 0 2 CCNE1 chr19:30313258 5'GT 30313258 Upstream 92bp
chrX 47060384 47060384 1 + C T UCEC 47060382 + 47060362 47060402 41 ATCAAGCTGGTGGTGGCAGACACGCGGGGCCTGTTTGGGTG ATCAAGCTGGTGGTGGCAGACATGCGGGGCCTGTTTGGGTG < 41bp 0.856835518760384 0.650709600185441 0.29549468 0.3897128 prediction 0.412251837149887 Functional Loss - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47060382 chrX:47060384 nonsynonymous SNV 0.831 4 23 hm5C_associated_SNPs_93280 0 0 1 0 2 UBA1 chrX:47060293 3'AG 47060293 Downstream 92bp
chrX 47060384 47060384 1 + C T UCEC 47060382 + 47060362 47060402 41 ATCAAGCTGGTGGTGGCAGACACGCGGGGCCTGTTTGGGTG ATCAAGCTGGTGGTGGCAGACATGCGGGGCCTGTTTGGGTG < 41bp 0.856835518760384 0.650709600185441 0.29549468 0.3897128 prediction 0.412251837149887 Functional Loss - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47060382 chrX:47060384 nonsynonymous SNV 0.831 4 23 hm5C_associated_SNPs_93280 0 0 1 0 2 UBA1 chrX:47060399 5'GT 47060399 Upstream 16bp
chr12 132237750 132237750 1 + C T rs1051219 132237747 + 132237727 132237767 41 GCGCCGCCCCCTCCCGGAATCGACGTGACTACTTACTACAG GCGCCGCCCCCTCCCGGAATCGATGTGACTACTTACTACAG < 41bp 0.70612580588908 0.490648301329139 0.8191241 0.14256075 prediction 0.412251611778159 Functional Loss - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132237747 chr12:132237750 synonymous SNV . 0 24 hm5C_associated_SNPs_93281 0 0 1 0 1 SFSWAP chr12:132237668 3'AG 132237668 Downstream 83bp
chr17 72340420 72340420 1 + G T BLCA 72340416 + 72340396 72340436 41 CCTCCCTGGGCTACCTGGAGCTGCGGGAGGACTCTAAGGGG CCTCCCTGGGCTACCTGGAGCTGCTGGAGGACTCTAAGGGG < 41bp 0.706123111664985 0.488921236719862 0.66732067 0.69990766 prediction 0.41224622332997 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72340416 chr17:72340420 nonsynonymous SNV 0.992 3 25 hm5C_associated_SNPs_93282 0 0 0 0 1 KIF19 chr17:72340362 3'AG 72340362 Downstream 59bp
chr17 72340419 72340419 1 + C T GBM 72340416 + 72340396 72340436 41 CCTCCCTGGGCTACCTGGAGCTGCGGGAGGACTCTAAGGGG CCTCCCTGGGCTACCTGGAGCTGTGGGAGGACTCTAAGGGG < 41bp 0.706123111664985 0.488165352315571 0.66732067 0.7304354 prediction 0.41224622332997 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72340416 chr17:72340419 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_93283 0 0 0 0 1 KIF19 chr17:72340362 3'AG 72340362 Downstream 58bp
chr1 34677950 34677950 1 + G A UCEC 34677947 + 34677927 34677967 41 TCCAAAGATGTCTGCCAACCCCCGAGACCCTCCCCTAATGG TCCAAAGATGTCTGCCAACCCCCAAGACCCTCCCCTAATGG < 41bp 0.82314716687997 0.617024807044037 0.18224663 0.08328217 prediction 0.412244719671867 Functional Loss - C1orf94 ENSG00000142698 CDS Human protein_coding chr1:34677947 chr1:34677950 nonsynonymous SNV 0.903 2 24 hm5C_associated_SNPs_93284 0 0 0 0 1 C1orf94 chr1:34678007 5'GT 34678007 Upstream 58bp
chr3 154884783 154884783 1 + G A SKCM 154884780 + 154884760 154884800 41 GCATCGGCATGGTCATAGGACACGAAATCACCCATGGCTTC GCATCGGCATGGTCATAGGACACAAAATCACCCATGGCTTC < 41bp 0.800025203272754 0.593903055222543 0.07328364 0.03772688 prediction 0.412244296100421 Functional Loss - MME ENSG00000196549 CDS Human protein_coding chr3:154884780 chr3:154884783 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_93285 0 0 0 0 2 MME chr3:154884691 3'AG 154884691 Downstream 93bp
chr3 154884783 154884783 1 + G A SKCM 154884780 + 154884760 154884800 41 GCATCGGCATGGTCATAGGACACGAAATCACCCATGGCTTC GCATCGGCATGGTCATAGGACACAAAATCACCCATGGCTTC < 41bp 0.800025203272754 0.593903055222543 0.07328364 0.03772688 prediction 0.412244296100421 Functional Loss - MME ENSG00000196549 CDS Human protein_coding chr3:154884780 chr3:154884783 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_93285 0 0 0 0 2 MME chr3:154884810 5'GT 154884810 Upstream 28bp
chr19 1254228 1254228 1 + G A LIHC 1254225 + 1254205 1254245 41 GCCTTGCGTGTGGGCGACCACATGATGTTCGTGCAGCTGCA GCCTTGCGTGTGGGCGACCACATAATGTTCGTGCAGCTGCA < 41bp 0.813854989183449 0.607734350095138 0.52307767 0.2639999 prediction 0.412241278176622 Functional Loss - MIDN ENSG00000167470 CDS Human protein_coding chr19:1254225 chr19:1254228 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_93286 0 0 1 0 1 MIDN chr19:1254166 3'AG 1254166 Downstream 63bp
chr20 1106274 1106274 1 + G T COAD 1106272 + 1106252 1106292 41 AAAGCCATCACCGTGGAGAGCAGCATGATCCTCAATGTGCT AAAGCCATCACCGTGGAGAGCATCATGATCCTCAATGTGCT < 41bp 0.706117020277771 0.34856063471801 0.36616528 0.088799685 prediction 0.412234040555542 Functional Loss - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1106272 chr20:1106274 nonsynonymous SNV 0.985 3 23 hm5C_associated_SNPs_93289 0 0 1 0 1 PSMF1 chr20:1106293 5'GT 1106293 Upstream 20bp
chr9 42368577 42368577 1 + C T CESC 42368575 + 42368555 42368595 41 GGAGGTGGAGCGCTGCTTGGCGCGCAGGAGCGGAGACCTGG GGAGGTGGAGCGCTGCTTGGCGTGCAGGAGCGGAGACCTGG < 41bp 0.706115817157234 0.47355012845655 0.24914944 0.1996539 prediction 0.412231634314468 Functional Loss - ANKRD20A2;ANKRD20A3 ENSG00000183148 CDS Human protein_coding chr9:42368575 chr9:42368577 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_93290 0 0 0 0 1 ANKRD20A2;ANKRD20A3 chr9:42368617 5'GT 42368617 Upstream 41bp
chr10 86014145 86014145 1 + G A UCEC 86014142 + 86014122 86014162 41 TTCGCCATGCCCCTCTTCATCACGATCACTTCCTACAGTCT TTCGCCATGCCCCTCTTCATCACAATCACTTCCTACAGTCT < 41bp 0.825318368911892 0.619202819032659 0.24786282 0.047784418 prediction 0.412231099758466 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86014142 chr10:86014145 synonymous SNV . 0 24 hm5C_associated_SNPs_93291 0 0 0 0 2 RGR chr10:86014082 3'AG 86014082 Downstream 64bp
chr10 86014145 86014145 1 + G A UCEC 86014142 + 86014122 86014162 41 TTCGCCATGCCCCTCTTCATCACGATCACTTCCTACAGTCT TTCGCCATGCCCCTCTTCATCACAATCACTTCCTACAGTCT < 41bp 0.825318368911892 0.619202819032659 0.24786282 0.047784418 prediction 0.412231099758466 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86014142 chr10:86014145 synonymous SNV . 0 24 hm5C_associated_SNPs_93291 0 0 0 0 2 RGR chr10:86014199 5'GT 86014199 Upstream 55bp
chr11 65620773 65620773 1 + G A BLCA 65620770 + 65620750 65620790 41 CAGGCCAGCACCCTGATTCTCCGGAACACCCTTGTTGCCCT CAGGCCAGCACCCTGATTCTCCGAAACACCCTTGTTGCCCT < 41bp 0.794858222678807 0.588744848798005 0.58064485 0.3068295 prediction 0.412226747761603 Functional Loss - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65620770 chr11:65620773 synonymous SNV . 0 24 hm5C_associated_SNPs_93292 0 0 0 0 1 SNX32 chr11:65620753 3'AG 65620753 Downstream 21bp
chr17 7318372 7318372 1 + G A SKCM 7318369 + 7318349 7318389 41 TACACGCGGCTGCTGGCAGCCAAGGTGGGCTGTGACCGAGA TACACGCGGCTGCTGGCAGCCAAAGTGGGCTGTGACCGAGA < 41bp 0.706113344168653 0.456989708104198 0.4925391 0.57692564 prediction 0.412226688337306 Functional Loss - NLGN2 ENSG00000169992 CDS Human protein_coding chr17:7318369 chr17:7318372 synonymous SNV . 0 24 hm5C_associated_SNPs_93293 0 0 1 0 2 NLGN2 chr17:7318275 3'AG 7318275 Downstream 98bp
chr17 7318372 7318372 1 + G A SKCM 7318369 + 7318349 7318389 41 TACACGCGGCTGCTGGCAGCCAAGGTGGGCTGTGACCGAGA TACACGCGGCTGCTGGCAGCCAAAGTGGGCTGTGACCGAGA < 41bp 0.706113344168653 0.456989708104198 0.4925391 0.57692564 prediction 0.412226688337306 Functional Loss - NLGN2 ENSG00000169992 CDS Human protein_coding chr17:7318369 chr17:7318372 synonymous SNV . 0 24 hm5C_associated_SNPs_93293 0 0 1 0 2 NLGN2 chr17:7318467 5'GT 7318467 Upstream 96bp
chr12 124228470 124228470 1 + G T GBM 124228466 + 124228446 124228486 41 GCTTATGGAGTCGGAAGCTACAGAGAAGTCAATCCAGGTTG GCTTATGGAGTCGGAAGCTACAGATAAGTCAATCCAGGTTG < 41bp 0.717262214998165 0.511151035033085 0.5689799 0.10620645 prediction 0.41222235993016 Functional Loss - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124228466 chr12:124228470 stopgain 0.982 1 25 hm5C_associated_SNPs_93294 0 0 1 0 1 ATP6V0A2 chr12:124228482 5'GT 124228482 Upstream 13bp
chr17 7324282 7324282 1 + C T STAD 7324279 + 7324259 7324299 41 CCTGCAGTCCATCTTCGGTGCACCATGGACCCTGTGATGAT CCTGCAGTCCATCTTCGGTGCACTATGGACCCTGTGATGAT < 41bp 0.733804626915336 0.527695353119391 0.022398084 0.023979902 prediction 0.41221854759189 Functional Loss - SPEM1 ENSG00000181323 CDS Human protein_coding chr17:7324279 chr17:7324282 synonymous SNV . 0 24 hm5C_associated_SNPs_93295 0 0 0 0 1 SPEM1 chr17:7324200 3'AG 7324200 Downstream 83bp
chr9 36657333 36657333 1 + A C TGCT 36657332 + 36657312 36657352 41 GTGTGAAGATGATTTATCAACAGGTGCTGCTACTCCCCGAA GTGTGAAGATGATTTATCAACCGGTGCTGCTACTCCCCGAA < 41bp 0.706108442457872 0.458975574718 0.91258293 0.75546783 prediction 0.412216884915743 Functional Loss - MELK ENSG00000165304 CDS Human protein_coding chr9:36657332 chr9:36657333 synonymous SNV . 0 22 hm5C_associated_SNPs_93296 0 0 1 0 2 MELK chr9:36657238 3'AG 36657238 Downstream 96bp
chr9 36657333 36657333 1 + A C TGCT 36657332 + 36657312 36657352 41 GTGTGAAGATGATTTATCAACAGGTGCTGCTACTCCCCGAA GTGTGAAGATGATTTATCAACCGGTGCTGCTACTCCCCGAA < 41bp 0.706108442457872 0.458975574718 0.91258293 0.75546783 prediction 0.412216884915743 Functional Loss - MELK ENSG00000165304 CDS Human protein_coding chr9:36657332 chr9:36657333 synonymous SNV . 0 22 hm5C_associated_SNPs_93296 0 0 1 0 2 MELK chr9:36657360 5'GT 36657360 Upstream 28bp
chr2 216211649 216211649 1 + T C rs140711402 216211648 + 216211628 216211668 41 TGCCATCGATCAATATGTGACTGGAACCATTGGCGAGGTGA TGCCATCGATCAATATGTGACCGGAACCATTGGCGAGGTGA < 41bp 0.706103201573878 0.450442755256118 0.2578709 0.3517214 prediction 0.412206403147755 Functional Loss - ATIC ENSG00000138363 CDS Human protein_coding chr2:216211648 chr2:216211649 synonymous SNV . 0 22 hm5C_associated_SNPs_93299 0 0 1 0 1 ATIC chr2:216211664 5'GT 216211664 Upstream 16bp
chr2 216211651 216211651 1 + G A UCEC 216211648 + 216211628 216211668 41 TGCCATCGATCAATATGTGACTGGAACCATTGGCGAGGTGA TGCCATCGATCAATATGTGACTGAAACCATTGGCGAGGTGA < 41bp 0.706103201573878 0.476571453609863 0.2578709 0.13225085 prediction 0.412206403147755 Functional Loss - ATIC ENSG00000138363 CDS Human protein_coding chr2:216211648 chr2:216211651 nonsynonymous SNV 0.990 2 24 hm5C_associated_SNPs_93300 0 0 1 0 1 ATIC chr2:216211664 5'GT 216211664 Upstream 14bp
chr11 113860242 113860242 1 + G A SKCM 113860239 + 113860219 113860259 41 CCCCAGGACTTCGAGAAGAGCCCGAGGGACAGATGTAGCCC CCCCAGGACTTCGAGAAGAGCCCAAGGGACAGATGTAGCCC < 41bp 0.815174120319879 0.60907147232632 0.8398768 0.36133862 prediction 0.412205295987119 Functional Loss - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113860239 chr11:113860242 synonymous SNV . 0 24 hm5C_associated_SNPs_93301 0 0 0 0 1 HTR3A chr11:113860187 3'AG 113860187 Downstream 56bp
chr1 41232621 41232621 1 + G A COAD 41232618 + 41232598 41232638 41 AAATGCAAGTCAGGGGAAGCCTCGAAGGTGCCTGAAAGAAA AAATGCAAGTCAGGGGAAGCCTCAAAGGTGCCTGAAAGAAA < 41bp 0.776287755499931 0.57018608672638 0.9161002 0.8974656 prediction 0.412203337547103 Functional Loss - NFYC ENSG00000066136 CDS Human protein_coding chr1:41232618 chr1:41232621 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_93303 0 0 1 0 2 NFYC chr1:41232590 3'AG 41232590 Downstream 32bp
chr1 41232621 41232621 1 + G A COAD 41232618 + 41232598 41232638 41 AAATGCAAGTCAGGGGAAGCCTCGAAGGTGCCTGAAAGAAA AAATGCAAGTCAGGGGAAGCCTCAAAGGTGCCTGAAAGAAA < 41bp 0.776287755499931 0.57018608672638 0.9161002 0.8974656 prediction 0.412203337547103 Functional Loss - NFYC ENSG00000066136 CDS Human protein_coding chr1:41232618 chr1:41232621 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_93303 0 0 1 0 2 NFYC chr1:41232646 5'GT 41232646 Upstream 26bp
chr7 148910867 148910867 1 + G A UCEC 148910864 + 148910844 148910884 41 AGCCATACCCATGGGGACCACGCGACTCAATGGACGGAGAG AGCCATACCCATGGGGACCACGCAACTCAATGGACGGAGAG < 41bp 0.810195322045329 0.604094165542659 0.5164087 0.42013016 prediction 0.41220231300534 Functional Loss - ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148910864 chr7:148910867 nonsynonymous SNV 0.986 2 24 hm5C_associated_SNPs_93304 0 0 1 0 1 ZNF282 chr7:148910906 5'GT 148910906 Upstream 40bp
chr9 95872911 95872911 1 + G T LUAD 95872907 + 95872887 95872927 41 GTGACCTCCTGAGCCACCTGCAGCGGAGCGGTGAGCGGGAC GTGACCTCCTGAGCCACCTGCAGCTGAGCGGTGAGCGGGAC < 41bp 0.716239376036735 0.51013925152958 0.863324 0.7710711 prediction 0.41220024901431 Functional Loss - CARD19 ENSG00000165233 CDS Human protein_coding chr9:95872907 chr9:95872911 nonsynonymous SNV 0.337 0 25 hm5C_associated_SNPs_93306 0 0 0 0 2 CARD19 chr9:95872850 3'AG 95872850 Downstream 62bp
chr9 95872911 95872911 1 + G T LUAD 95872907 + 95872887 95872927 41 GTGACCTCCTGAGCCACCTGCAGCGGAGCGGTGAGCGGGAC GTGACCTCCTGAGCCACCTGCAGCTGAGCGGTGAGCGGGAC < 41bp 0.716239376036735 0.51013925152958 0.863324 0.7710711 prediction 0.41220024901431 Functional Loss - CARD19 ENSG00000165233 CDS Human protein_coding chr9:95872907 chr9:95872911 nonsynonymous SNV 0.337 0 25 hm5C_associated_SNPs_93306 0 0 0 0 2 CARD19 chr9:95873003 5'GT 95873003 Upstream 93bp
chr15 49611987 49611987 1 + T C UCEC 49611986 + 49611966 49612006 41 GCTGCCCCGAGCTGGATCAGCTGGTGGACATCTGTCGGTGA GCTGCCCCGAGCTGGATCAGCCGGTGGACATCTGTCGGTGA < 41bp 0.806889813949859 0.600790573531452 0.7308723 0.8117616 prediction 0.412198480836814 Functional Loss - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49611986 chr15:49611987 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_93308 0 0 1 0 1 GALK2 chr15:49612002 5'GT 49612002 Upstream 16bp
chr3 184290346 184290346 1 + G A UCEC 184290343 + 184290323 184290363 41 TGAATCCCATCCGCACATACCAGGTGTGTAATGTGCGCGAG TGAATCCCATCCGCACATACCAGATGTGTAATGTGCGCGAG < 41bp 0.819991010479677 0.613898955230865 0.87768555 0.70366335 prediction 0.412184110497623 Functional Loss - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184290343 chr3:184290346 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_93309 0 0 0 0 1 EPHB3 chr3:184290292 3'AG 184290292 Downstream 55bp
chr2 176988675 176988675 1 + G A UCEC 176988672 + 176988652 176988692 41 CTCTTTGTAGACAACCCCGCCGCGAACTGGATCCACGCTCG CTCTTTGTAGACAACCCCGCCGCAAACTGGATCCACGCTCG < 41bp 0.809656918188021 0.603568091519926 0.36408177 0.10806593 prediction 0.412177653336192 Functional Loss - HOXD9 ENSG00000128709 CDS Human protein_coding chr2:176988672 chr2:176988675 synonymous SNV . 0 24 hm5C_associated_SNPs_93313 0 0 1 0 1 HOXD9 chr2:176988662 3'AG 176988662 Downstream 14bp
chr1 1114698 1114698 1 + C T COAD 1114696 + 1114676 1114716 41 GCCAAGGATCCAGCAGAGGCCTCGGGCTCGAGTCTCAGGTG GCCAAGGATCCAGCAGAGGCCTTGGGCTCGAGTCTCAGGTG < 41bp 0.822366346390998 0.616280519861147 0.30188388 0.36429358 prediction 0.412171653059703 Functional Loss - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1114696 chr1:1114698 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_93315 0 0 0 0 1 TTLL10 chr1:1114713 5'GT 1114713 Upstream 16bp
chr1 183155525 183155525 1 + C T SKCM 183155523 + 183155503 183155543 41 CTGGGCTGCTGCCTCTGCTTCTCGCTCCTCCTGCCCGCAGC CTGGGCTGCTGCCTCTGCTTCTTGCTCCTCCTGCCCGCAGC < 41bp 0.706083988134739 0.45786904338763 0.33928865 0.15744346 prediction 0.412167976269477 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183155523 chr1:183155525 nonsynonymous SNV 0.131 0 23 hm5C_associated_SNPs_93317 0 0 0 0 1 LAMC2 chr1:183155566 5'GT 183155566 Upstream 42bp
chr1 176681058 176681058 1 + G A SKCM 176681055 + 176681035 176681075 41 TTGCCAGTGAAAATGAAACTCAGGATGACAGGAGTGAACAG TTGCCAGTGAAAATGAAACTCAGAATGACAGGAGTGAACAG < 41bp 0.787132521590703 0.581051928492272 0.8812282 0.4102758 prediction 0.412161186196862 Functional Loss - PAPPA2 ENSG00000116183 CDS Human protein_coding chr1:176681055 chr1:176681058 nonsynonymous SNV 0.217 1 24 hm5C_associated_SNPs_93318 0 0 0 0 2 PAPPA2 chr1:176680971 3'AG 176680971 Downstream 88bp
chr1 176681058 176681058 1 + G A SKCM 176681055 + 176681035 176681075 41 TTGCCAGTGAAAATGAAACTCAGGATGACAGGAGTGAACAG TTGCCAGTGAAAATGAAACTCAGAATGACAGGAGTGAACAG < 41bp 0.787132521590703 0.581051928492272 0.8812282 0.4102758 prediction 0.412161186196862 Functional Loss - PAPPA2 ENSG00000116183 CDS Human protein_coding chr1:176681055 chr1:176681058 nonsynonymous SNV 0.217 1 24 hm5C_associated_SNPs_93318 0 0 0 0 2 PAPPA2 chr1:176681117 5'GT 176681117 Upstream 60bp
chr19 50149800 50149800 1 + G A rs56918620 50149797 + 50149777 50149817 41 TTCCAGGTGTTGGACATGGCCACGGACAGCTTCCTCGCAGG TTCCAGGTGTTGGACATGGCCACAGACAGCTTCCTCGCAGG < 41bp 0.82341562899424 0.617340366055033 0.8428111 0.47178528 prediction 0.412150525878414 Functional Loss - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50149797 chr19:50149800 nonsynonymous SNV 0.967 0 24 hm5C_associated_SNPs_93322 0 0 1 0 2 SCAF1 chr19:50149783 3'AG 50149783 Downstream 18bp
chr19 50149800 50149800 1 + G A rs56918620 50149797 + 50149777 50149817 41 TTCCAGGTGTTGGACATGGCCACGGACAGCTTCCTCGCAGG TTCCAGGTGTTGGACATGGCCACAGACAGCTTCCTCGCAGG < 41bp 0.82341562899424 0.617340366055033 0.8428111 0.47178528 prediction 0.412150525878414 Functional Loss - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50149797 chr19:50149800 nonsynonymous SNV 0.967 0 24 hm5C_associated_SNPs_93322 0 0 1 0 2 SCAF1 chr19:50149883 5'GT 50149883 Upstream 84bp
chr19 49686059 49686059 1 + G T STAD 49686055 + 49686035 49686075 41 CCCAGCCCTAAAAGGGGGAGCTGCGGAGCTCCGGCCCCCTG CCCAGCCCTAAAAGGGGGAGCTGCTGAGCTCCGGCCCCCTG < 41bp 0.740749486004532 0.534676808746625 0.84869987 0.7259545 prediction 0.412145354515815 Functional Loss - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49686055 chr19:49686059 synonymous SNV . 0 25 hm5C_associated_SNPs_93325 0 0 0 0 1 TRPM4 chr19:49686124 5'GT 49686124 Upstream 66bp
chr15 63419128 63419128 1 + C T SARC 63419125 + 63419105 63419145 41 ACAGTTATGCGAATTGCTAGCATCAGCAAAAGTCTCACCAT ACAGTTATGCGAATTGCTAGCATTAGCAAAAGTCTCACCAT < 41bp 0.706071206926741 0.484085358365816 0.1216003 0.09534934 prediction 0.412142413853483 Functional Loss - LACTB ENSG00000103642 CDS Human protein_coding chr15:63419125 chr15:63419128 synonymous SNV . 0 24 hm5C_associated_SNPs_93326 0 0 0 0 1 LACTB chr15:63419058 3'AG 63419058 Downstream 71bp
chr1 196799639 196799639 1 + G A SKCM 196799636 + 196799616 196799656 41 ATGATGTTTTTTAGATTCTACGGGAAAATGTGGGCCCCCTC ATGATGTTTTTTAGATTCTACGGAAAAATGTGGGCCCCCTC < 41bp 0.789300343886749 0.583230464771315 0.6538415 0.27321136 prediction 0.412139758230868 Functional Loss - CFHR1 ENSG00000244414 CDS Human protein_coding chr1:196799636 chr1:196799639 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_93328 0 0 0 0 1 CFHR1 chr1:196799630 3'AG 196799630 Downstream 10bp
chr17 18145297 18145297 1 + G A BLCA 18145294 + 18145274 18145314 41 CTCTGGACATTAACTGGCCCCGCGATGCCACCCAGGCCAGG CTCTGGACATTAACTGGCCCCGCAATGCCACCCAGGCCAGG < 41bp 0.823052233067241 0.61698554670756 0.035872072 0.022135377 prediction 0.412133372719361 Functional Loss - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18145294 chr17:18145297 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_93331 0 0 1 0 2 LLGL1 chr17:18145199 3'AG 18145199 Downstream 99bp
chr17 18145297 18145297 1 + G A BLCA 18145294 + 18145274 18145314 41 CTCTGGACATTAACTGGCCCCGCGATGCCACCCAGGCCAGG CTCTGGACATTAACTGGCCCCGCAATGCCACCCAGGCCAGG < 41bp 0.823052233067241 0.61698554670756 0.035872072 0.022135377 prediction 0.412133372719361 Functional Loss - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18145294 chr17:18145297 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_93331 0 0 1 0 2 LLGL1 chr17:18145313 5'GT 18145313 Upstream 17bp
chr1 156348149 156348149 1 + G T THYM 156348145 + 156348125 156348165 41 CCCAGCTGGAGAAGAGCAAGCACCGCCAGGGCTCCGTCTAC CCCAGCTGGAGAAGAGCAAGCACCTCCAGGGCTCCGTCTAC < 41bp 0.713170457271094 0.507106182291616 0.027869552 0.04356724 prediction 0.412128549958956 Functional Loss - RHBG ENSG00000132677 CDS Human protein_coding chr1:156348145 chr1:156348149 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_93333 0 0 1 1 2 RHBG chr1:156348190 5'GT 156348190 Upstream 42bp
chr1 156348149 156348149 1 + G T THYM 156348145 + 156348125 156348165 41 CCCAGCTGGAGAAGAGCAAGCACCGCCAGGGCTCCGTCTAC CCCAGCTGGAGAAGAGCAAGCACCTCCAGGGCTCCGTCTAC < 41bp 0.713170457271094 0.507106182291616 0.027869552 0.04356724 prediction 0.412128549958956 Functional Loss - RHBG ENSG00000132677 CDS Human protein_coding chr1:156348145 chr1:156348149 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_93333 0 0 1 1 2 RHBG chr1:156348204 5'GT 156348204 Upstream 56bp
chr16 28967541 28967541 1 + A T ESCA 28967539 + 28967519 28967559 41 AGCCACCTCAGGGTCAAGAGCAACAGGGCCAAGAGGATGAA AGCCACCTCAGGGTCAAGAGCATCAGGGCCAAGAGGATGAA < 41bp 0.708051721029181 0.50199064286529 0.2900864 0.13618973 prediction 0.412122156327782 Functional Loss - NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28967539 chr16:28967541 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_93339 0 0 1 0 1 NFATC2IP chr16:28967472 3'AG 28967472 Downstream 70bp
chr9 43816743 43816743 1 + G T LUAD 43816739 + 43816719 43816759 41 CCTCATCGAGCTCCTCGACACGCAGGTCAACTTCACCGTGG CCTCATCGAGCTCCTCGACACGCATGTCAACTTCACCGTGG < 41bp 0.71467175499593 0.508618852183531 0.113131434 0.041511714 prediction 0.412105805624798 Functional Loss - CNTNAP3B ENSG00000154529 CDS Human protein_coding chr9:43816739 chr9:43816743 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_93343 0 0 0 1 1 CNTNAP3B chr9:43816821 5'GT 43816821 Upstream 79bp
chr19 36255975 36255975 1 + G T COAD 36255971 + 36255951 36255991 41 TCCTCCTCCTCCCTCAGCCCCAGCGATGCCAGCACTTCCTC TCCTCCTCCTCCCTCAGCCCCAGCTATGCCAGCACTTCCTC < 41bp 0.706052805041542 0.482124674652054 0.74975914 0.29452765 prediction 0.412105610083083 Functional Loss - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36255971 chr19:36255975 nonsynonymous SNV 0.865 3 25 hm5C_associated_SNPs_93344 0 0 0 0 1 PROSER3 chr19:36255935 3'AG 36255935 Downstream 41bp
chr19 36255974 36255974 1 + C T UCEC 36255971 + 36255951 36255991 41 TCCTCCTCCTCCCTCAGCCCCAGCGATGCCAGCACTTCCTC TCCTCCTCCTCCCTCAGCCCCAGTGATGCCAGCACTTCCTC < 41bp 0.706052805041542 0.497818771926021 0.74975914 0.92084324 prediction 0.412105610083083 Functional Loss - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36255971 chr19:36255974 synonymous SNV . 0 24 hm5C_associated_SNPs_93345 0 0 0 0 1 PROSER3 chr19:36255935 3'AG 36255935 Downstream 40bp
chr16 31422778 31422778 1 + G A SKCM 31422775 + 31422755 31422795 41 GCCCCGGGAGAGCAGGAGAACCGGGGTGCTGTCTACCTGTT GCCCCGGGAGAGCAGGAGAACCGAGGTGCTGTCTACCTGTT < 41bp 0.832816429958182 0.626764612167931 0.9506227 0.9332076 prediction 0.412103635580501 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422775 chr16:31422778 synonymous SNV . 0 24 hm5C_associated_SNPs_93346 0 0 0 0 1 ITGAD chr16:31422838 5'GT 31422838 Upstream 61bp
chr11 73670544 73670544 1 + A T LUSC 73670540 + 73670520 73670560 41 AGGTGATGCCCATCCACAGCCATGAAGAGAGGCATCTACGA AGGTGATGCCCATCCACAGCCATGTAGAGAGGCATCTACGA < 41bp 0.706046078120208 0.375626285481855 0.15409958 0.107824564 prediction 0.412092156240416 Functional Loss - DNAJB13 ENSG00000187726 CDS Human protein_coding chr11:73670540 chr11:73670544 stopgain 0.998 1 25 hm5C_associated_SNPs_93348 0 0 0 0 1 DNAJB13 chr11:73670539 3'AG 73670539 Downstream 6bp
chrX 48543974 48543974 1 + G T UCEC 48543972 + 48543952 48543992 41 GGGAACAGGAGCTGTACTCACAGCTTGTCTACTCCACCCCC GGGAACAGGAGCTGTACTCACATCTTGTCTACTCCACCCCC < 41bp 0.706045289821338 0.342184925145915 0.20886323 0.08024618 prediction 0.412090579642676 Functional Loss - WAS ENSG00000015285 CDS Human protein_coding chrX:48543972 chrX:48543974 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_93349 0 0 0 0 2 WAS chrX:48543936 3'AG 48543936 Downstream 39bp
chrX 48543974 48543974 1 + G T UCEC 48543972 + 48543952 48543992 41 GGGAACAGGAGCTGTACTCACAGCTTGTCTACTCCACCCCC GGGAACAGGAGCTGTACTCACATCTTGTCTACTCCACCCCC < 41bp 0.706045289821338 0.342184925145915 0.20886323 0.08024618 prediction 0.412090579642676 Functional Loss - WAS ENSG00000015285 CDS Human protein_coding chrX:48543972 chrX:48543974 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_93349 0 0 0 0 2 WAS chrX:48544022 5'GT 48544022 Upstream 49bp
chr2 219221845 219221845 1 + C T STAD 219221843 + 219221823 219221863 41 AGAGCTAAGGACCACCAGCCCTCGGGTCCGGAGTGTCTGCC AGAGCTAAGGACCACCAGCCCTTGGGTCCGGAGTGTCTGCC < 41bp 0.84497308251037 0.638936785823873 0.13877544 0.12074715 prediction 0.412072593372994 Functional Loss - CATIP ENSG00000158428 CDS Human protein_coding chr2:219221843 chr2:219221845 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_93352 0 0 0 0 2 CATIP chr2:219221818 3'AG 219221818 Downstream 28bp
chr2 219221845 219221845 1 + C T STAD 219221843 + 219221823 219221863 41 AGAGCTAAGGACCACCAGCCCTCGGGTCCGGAGTGTCTGCC AGAGCTAAGGACCACCAGCCCTTGGGTCCGGAGTGTCTGCC < 41bp 0.84497308251037 0.638936785823873 0.13877544 0.12074715 prediction 0.412072593372994 Functional Loss - CATIP ENSG00000158428 CDS Human protein_coding chr2:219221843 chr2:219221845 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_93352 0 0 0 0 2 CATIP chr2:219221910 5'GT 219221910 Upstream 66bp
chr5 175795830 175795830 1 + C T STAD 175795827 + 175795807 175795847 41 CAGTTGGGGGCAGCCAGAACCTGCGCTTCTACTGGAAGGAG CAGTTGGGGGCAGCCAGAACCTGTGCTTCTACTGGAAGGAG < 41bp 0.759642135348494 0.553608852243061 0.21486005 0.14986613 prediction 0.412066566210866 Functional Loss - ARL10 ENSG00000175414 CDS Human protein_coding chr5:175795827 chr5:175795830 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_93356 0 0 1 0 1 ARL10 chr5:175795810 3'AG 175795810 Downstream 21bp
chr11 64807235 64807235 1 + C T rs495820 64807232 + 64807212 64807252 41 TGAAGCGGGCAGAGGAGATCCTGCGCCTGCACCTGTCTCAA TGAAGCGGGCAGAGGAGATCCTGTGCCTGCACCTGTCTCAA < 41bp 0.740758728054321 0.534727039488715 0.22117719 0.2581055 prediction 0.412063377131213 Functional Loss - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64807232 chr11:64807235 nonsynonymous SNV 0.004 1 24 hm5C_associated_SNPs_93358 0 0 1 0 1 SNX15 chr11:64807158 3'AG 64807158 Downstream 78bp
chr6 117043381 117043381 1 + C T UCEC 117043378 + 117043358 117043398 41 TGTTGGGCCCTTTCTTATCTCTCCGATGGACCCAATGATAA TGTTGGGCCCTTTCTTATCTCTCTGATGGACCCAATGATAA < 41bp 0.791274573690661 0.58524329391783 0.2961629 0.12813455 prediction 0.412062559545661 Functional Loss - KPNA5 ENSG00000196911 CDS Human protein_coding chr6:117043378 chr6:117043381 synonymous SNV . 0 24 hm5C_associated_SNPs_93359 0 0 1 0 2 KPNA5 chr6:117043289 3'AG 117043289 Downstream 93bp
chr6 117043381 117043381 1 + C T UCEC 117043378 + 117043358 117043398 41 TGTTGGGCCCTTTCTTATCTCTCCGATGGACCCAATGATAA TGTTGGGCCCTTTCTTATCTCTCTGATGGACCCAATGATAA < 41bp 0.791274573690661 0.58524329391783 0.2961629 0.12813455 prediction 0.412062559545661 Functional Loss - KPNA5 ENSG00000196911 CDS Human protein_coding chr6:117043378 chr6:117043381 synonymous SNV . 0 24 hm5C_associated_SNPs_93359 0 0 1 0 2 KPNA5 chr6:117043452 5'GT 117043452 Upstream 72bp
chr7 128489403 128489403 1 + G A READ 128489400 + 128489380 128489420 41 GGCAGGTGCCTGCCTGGGCCCTCGAATCCAGATTGGGCAGG GGCAGGTGCCTGCCTGGGCCCTCAAATCCAGATTGGGCAGG < 41bp 0.706027446535268 0.465444312147898 0.8978159 0.6121914 prediction 0.412054893070537 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128489400 chr7:128489403 nonsynonymous SNV 0.731 1 24 hm5C_associated_SNPs_93360 0 0 1 0 1 FLNC chr7:128489385 3'AG 128489385 Downstream 19bp
chr1 156255048 156255048 1 + G A GBM 156255045 + 156255025 156255065 41 AACAGGAGACCCTGGCCCTACTGGAAGTGAAGAGGTCTGAT AACAGGAGACCCTGGCCCTACTGAAAGTGAAGAGGTCTGAT < 41bp 0.787871217851006 0.581846227053652 0.37077722 0.3007757 prediction 0.412049981594708 Functional Loss - TMEM79 ENSG00000163472 CDS Human protein_coding chr1:156255045 chr1:156255048 nonsynonymous SNV 0.934 1 24 hm5C_associated_SNPs_93361 0 0 0 0 2 TMEM79 chr1:156254975 3'AG 156254975 Downstream 74bp
chr1 156255048 156255048 1 + G A GBM 156255045 + 156255025 156255065 41 AACAGGAGACCCTGGCCCTACTGGAAGTGAAGAGGTCTGAT AACAGGAGACCCTGGCCCTACTGAAAGTGAAGAGGTCTGAT < 41bp 0.787871217851006 0.581846227053652 0.37077722 0.3007757 prediction 0.412049981594708 Functional Loss - TMEM79 ENSG00000163472 CDS Human protein_coding chr1:156255045 chr1:156255048 nonsynonymous SNV 0.934 1 24 hm5C_associated_SNPs_93361 0 0 0 0 2 TMEM79 chr1:156255058 5'GT 156255058 Upstream 11bp
chrX 128884528 128884528 1 + C T COAD 128884525 + 128884505 128884545 41 CCCGACTGCCGTCCTTCTGTCGGCGCTTGAGGAGACGGCCT CCCGACTGCCGTCCTTCTGTCGGTGCTTGAGGAGACGGCCT < 41bp 0.706024589883199 0.495712306798004 0.9070456 0.24956453 prediction 0.412049179766398 Functional Loss - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128884525 chrX:128884528 nonsynonymous SNV 0.035 2 24 hm5C_associated_SNPs_93362 0 0 0 0 2 XPNPEP2 chrX:128884444 3'AG 128884444 Downstream 85bp
chrX 128884528 128884528 1 + C T COAD 128884525 + 128884505 128884545 41 CCCGACTGCCGTCCTTCTGTCGGCGCTTGAGGAGACGGCCT CCCGACTGCCGTCCTTCTGTCGGTGCTTGAGGAGACGGCCT < 41bp 0.706024589883199 0.495712306798004 0.9070456 0.24956453 prediction 0.412049179766398 Functional Loss - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128884525 chrX:128884528 nonsynonymous SNV 0.035 2 24 hm5C_associated_SNPs_93362 0 0 0 0 2 XPNPEP2 chrX:128884545 5'GT 128884545 Upstream 18bp
chr15 90276310 90276310 1 + G A UCEC 90276307 + 90276287 90276327 41 ATTCACTTCCTAAAATATTTCTCGGTCCACAAAGGACAGAA ATTCACTTCCTAAAATATTTCTCAGTCCACAAAGGACAGAA < 41bp 0.7060233156255 0.460225311080771 0.015052766 0.015425712 prediction 0.412046631251 Functional Loss - WDR93 ENSG00000140527 CDS Human protein_coding chr15:90276307 chr15:90276310 synonymous SNV . 0 24 hm5C_associated_SNPs_93363 0 0 0 0 1 WDR93 chr15:90276237 3'AG 90276237 Downstream 74bp
chr22 45996263 45996263 1 + G T LUAD 45996260 + 45996240 45996280 41 CTGGAGATGAACTATGTGGTCGGGGGCGTGGTCTCCCACCG CTGGAGATGAACTATGTGGTCGGTGGCGTGGTCTCCCACCG < 41bp 0.938097993116211 0.732076881213791 0.93424773 0.6479335 prediction 0.41204222380484 Functional Loss - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45996260 chr22:45996263 synonymous SNV . 0 24 hm5C_associated_SNPs_93364 0 0 1 0 1 FBLN1 chr22:45996187 3'AG 45996187 Downstream 77bp
chr6 35280107 35280107 1 + G T UCEC 35280105 + 35280085 35280125 41 TACCTGCTGAAAAAGGTACTCAGCAGCATGAGCTTGGAGGT TACCTGCTGAAAAAGGTACTCATCAGCATGAGCTTGGAGGT < 41bp 0.706018629298263 0.354210729074755 0.75059456 0.20097941 prediction 0.412037258596526 Functional Loss - DEF6 ENSG00000023892 CDS Human protein_coding chr6:35280105 chr6:35280107 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_93366 0 0 0 0 1 DEF6 chr6:35280079 3'AG 35280079 Downstream 29bp
chr16 24366271 24366271 1 + C T COAD 24366269 + 24366249 24366289 41 AGACACAACGTCATTCTCAGCGCGGGCATCTTTTTTGTCTC AGACACAACGTCATTCTCAGCGTGGGCATCTTTTTTGTCTC < 41bp 0.842532979457649 0.636516769361033 0.81073606 0.6404452 prediction 0.412032420193231 Functional Loss - CACNG3 ENSG00000006116 CDS Human protein_coding chr16:24366269 chr16:24366271 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_93368 0 0 0 0 1 CACNG3 chr16:24366294 5'GT 24366294 Upstream 24bp
chr2 209358033 209358033 1 + C T LUAD 209358030 + 209358010 209358050 41 ATGTGGAGTCGGTGGAACCTCTCCGTGGACTGGAAAAGGAC ATGTGGAGTCGGTGGAACCTCTCTGTGGACTGGAAAAGGAC < 41bp 0.748791738786046 0.54277940078405 0.48480555 0.099437 prediction 0.412024676003991 Functional Loss - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209358030 chr2:209358033 synonymous SNV . 0 24 hm5C_associated_SNPs_93370 0 0 0 0 1 PTH2R chr2:209357989 3'AG 209357989 Downstream 45bp
chr22 29177065 29177065 1 + T C UCEC 29177064 + 29177044 29177084 41 TGTTAGTGGCCTTTCCATACCTGGGATATTAGATGTTATTT TGTTAGTGGCCTTTCCATACCCGGGATATTAGATGTTATTT < 41bp 0.815043642682446 0.609031502690141 0.06370214 0.27650028 prediction 0.412024279984609 Functional Loss - CCDC117 ENSG00000159873 CDS Human protein_coding chr22:29177064 chr22:29177065 synonymous SNV . 0 22 hm5C_associated_SNPs_93373 0 0 1 0 1 CCDC117 chr22:29177160 5'GT 29177160 Upstream 96bp
chr16 85177540 85177540 1 + C T rs116520763 85177538 + 85177518 85177558 41 GAGACACGTGGACCCCGTGCCTCGAAACAGGTCCTGGGAGT GAGACACGTGGACCCCGTGCCTTGAAACAGGTCCTGGGAGT < 41bp 0.822732704341659 0.616724287530197 0.91519725 0.20010361 prediction 0.412016833622924 Functional Loss - LINC02139 ENSG00000153789;ENSG00000262601 intergenic Human other chr16:85177538 chr16:85177540 . . 0 23 hm5C_associated_SNPs_93375 0 0 0 0 1 LINC02139 chr16:85177547 5'GT 85177547 Upstream 8bp
chr4 15707201 15707201 1 + C T rs115720734 15707198 + 15707178 15707218 41 GCGCTGGACAAGGATCCCTGCTCCGTGCTGCCCTCAGACTA GCGCTGGACAAGGATCCCTGCTCTGTGCTGCCCTCAGACTA < 41bp 0.773950451618617 0.567942280303703 0.072341114 0.0423069 prediction 0.412016342629828 Functional Loss - BST1 ENSG00000109743 CDS Human protein_coding chr4:15707198 chr4:15707201 synonymous SNV . 0 24 hm5C_associated_SNPs_93376 0 0 0 0 2 BST1 chr4:15707138 3'AG 15707138 Downstream 64bp
chr4 15707201 15707201 1 + C T rs115720734 15707198 + 15707178 15707218 41 GCGCTGGACAAGGATCCCTGCTCCGTGCTGCCCTCAGACTA GCGCTGGACAAGGATCCCTGCTCTGTGCTGCCCTCAGACTA < 41bp 0.773950451618617 0.567942280303703 0.072341114 0.0423069 prediction 0.412016342629828 Functional Loss - BST1 ENSG00000109743 CDS Human protein_coding chr4:15707198 chr4:15707201 synonymous SNV . 0 24 hm5C_associated_SNPs_93376 0 0 0 0 2 BST1 chr4:15707264 5'GT 15707264 Upstream 64bp
chr12 6647115 6647115 1 + T C BLCA 6647114 + 6647094 6647134 41 CCACTCCTCCACCTTTGACGCTGGGGCTGGCATTGCCCTCA CCACTCCTCCACCTTTGACGCCGGGGCTGGCATTGCCCTCA < 41bp 0.804417061191692 0.598410858718832 0.6947758 0.9238541 prediction 0.412012404945719 Functional Loss - GAPDH ENSG00000111640 CDS Human protein_coding chr12:6647114 chr12:6647115 synonymous SNV . 0 22 hm5C_associated_SNPs_93377 0 0 1 0 1 GAPDH chr12:6647162 5'GT 6647162 Upstream 48bp
chr11 65108447 65108447 1 + C T LUAD 65108444 + 65108424 65108464 41 CTTCCTGCCACAGGATTGGCCTCCGGACAGCTGTACTCCTA CTTCCTGCCACAGGATTGGCCTCTGGACAGCTGTACTCCTA < 41bp 0.706005980992901 0.479857598141302 0.27885544 0.120262295 prediction 0.412011961985803 Functional Loss - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65108444 chr11:65108447 synonymous SNV . 0 24 hm5C_associated_SNPs_93378 0 0 1 0 2 DPF2 chr11:65108437 3'AG 65108437 Downstream 11bp
chr11 65108447 65108447 1 + C T LUAD 65108444 + 65108424 65108464 41 CTTCCTGCCACAGGATTGGCCTCCGGACAGCTGTACTCCTA CTTCCTGCCACAGGATTGGCCTCTGGACAGCTGTACTCCTA < 41bp 0.706005980992901 0.479857598141302 0.27885544 0.120262295 prediction 0.412011961985803 Functional Loss - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65108444 chr11:65108447 synonymous SNV . 0 24 hm5C_associated_SNPs_93378 0 0 1 0 2 DPF2 chr11:65108544 5'GT 65108544 Upstream 98bp
chr11 65108446 65108446 1 + C T SKCM 65108444 + 65108424 65108464 41 CTTCCTGCCACAGGATTGGCCTCCGGACAGCTGTACTCCTA CTTCCTGCCACAGGATTGGCCTTCGGACAGCTGTACTCCTA < 41bp 0.706005980992901 0.417139682504971 0.27885544 0.15000966 prediction 0.412011961985803 Functional Loss - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65108444 chr11:65108446 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_93379 0 0 1 0 2 DPF2 chr11:65108437 3'AG 65108437 Downstream 10bp
chr11 65108446 65108446 1 + C T SKCM 65108444 + 65108424 65108464 41 CTTCCTGCCACAGGATTGGCCTCCGGACAGCTGTACTCCTA CTTCCTGCCACAGGATTGGCCTTCGGACAGCTGTACTCCTA < 41bp 0.706005980992901 0.417139682504971 0.27885544 0.15000966 prediction 0.412011961985803 Functional Loss - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65108444 chr11:65108446 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_93379 0 0 1 0 2 DPF2 chr11:65108544 5'GT 65108544 Upstream 99bp
chr1 79119936 79119936 1 + G A UCEC 79119933 + 79119913 79119953 41 TGATTATTTCCCCAGATTCACTGGATGAAAGAAAGATAAAA TGATTATTTCCCCAGATTCACTGAATGAAAGAAAGATAAAA < 41bp 0.705999989738334 0.482455786455989 0.12571427 0.019805372 prediction 0.411999979476669 Functional Loss - IFI44 ENSG00000137965 CDS Human protein_coding chr1:79119933 chr1:79119936 nonsynonymous SNV 0.016 0 24 hm5C_associated_SNPs_93381 0 0 0 0 2 IFI44 chr1:79119928 3'AG 79119928 Downstream 9bp
chr1 79119936 79119936 1 + G A UCEC 79119933 + 79119913 79119953 41 TGATTATTTCCCCAGATTCACTGGATGAAAGAAAGATAAAA TGATTATTTCCCCAGATTCACTGAATGAAAGAAAGATAAAA < 41bp 0.705999989738334 0.482455786455989 0.12571427 0.019805372 prediction 0.411999979476669 Functional Loss - IFI44 ENSG00000137965 CDS Human protein_coding chr1:79119933 chr1:79119936 nonsynonymous SNV 0.016 0 24 hm5C_associated_SNPs_93381 0 0 0 0 2 IFI44 chr1:79119964 5'GT 79119964 Upstream 29bp
chr5 5242297 5242297 1 + C T LUSC 5242294 + 5242274 5242314 41 CGCTCTGAGTGCTCCGTGTCCTGCGGAGGGGGTAGGTGCCT CGCTCTGAGTGCTCCGTGTCCTGTGGAGGGGGTAGGTGCCT < 41bp 0.743498042842889 0.537499012261097 0.6358881 0.2541403 prediction 0.411998061163585 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5242294 chr5:5242297 synonymous SNV . 0 24 hm5C_associated_SNPs_93382 0 0 0 0 1 ADAMTS16 chr5:5242304 5'GT 5242304 Upstream 8bp
chr6 167709555 167709555 1 + T C SKCM 167709554 + 167709534 167709574 41 CCACCTCCATACTGCTGGGACTCGGGGCCGCCCCGCTGTGG CCACCTCCATACTGCTGGGACCCGGGGCCGCCCCGCTGTGG < 41bp 0.834574471415777 0.628577205988605 0.1777961 0.2334879 prediction 0.411994530854344 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167709554 chr6:167709555 nonsynonymous SNV 0.021 4 22 hm5C_associated_SNPs_93383 0 0 1 0 1 UNC93A chr6:167709520 3'AG 167709520 Downstream 36bp
chr10 75552596 75552596 1 + G A SARC 75552593 + 75552573 75552613 41 CTGGGCTGAAGCCACTGGAACAGGAGAGTCGCATGGAGGTG CTGGGCTGAAGCCACTGGAACAGAAGAGTCGCATGGAGGTG < 41bp 0.830066578643752 0.624070052844767 0.8525997 0.48706338 prediction 0.411993051597968 Functional Loss - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75552593 chr10:75552596 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_93385 0 0 1 0 1 ZSWIM8 chr10:75552610 5'GT 75552610 Upstream 15bp
chr9 133943561 133943561 1 + A T UCEC 133943557 + 133943537 133943577 41 GCCTGCCTCATGTGACTGCACGGGACTGCAGCCGCTGCTAC GCCTGCCTCATGTGACTGCACGGGTCTGCAGCCGCTGCTAC < 41bp 0.903969369394627 0.697974690005031 0.6932472 0.8081451 prediction 0.411989358779192 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133943557 chr9:133943561 nonsynonymous SNV 0.069 2 25 hm5C_associated_SNPs_93386 0 0 0 0 2 LAMC3 chr9:133943465 3'AG 133943465 Downstream 97bp
chr9 133943561 133943561 1 + A T UCEC 133943557 + 133943537 133943577 41 GCCTGCCTCATGTGACTGCACGGGACTGCAGCCGCTGCTAC GCCTGCCTCATGTGACTGCACGGGTCTGCAGCCGCTGCTAC < 41bp 0.903969369394627 0.697974690005031 0.6932472 0.8081451 prediction 0.411989358779192 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133943557 chr9:133943561 nonsynonymous SNV 0.069 2 25 hm5C_associated_SNPs_93386 0 0 0 0 2 LAMC3 chr9:133943618 5'GT 133943618 Upstream 58bp
chr19 35837080 35837080 1 + G T UCEC 35837076 + 35837056 35837096 41 ATGCAGAGTCCTCAGAGATGCAGAGACCTCCCCCGGACTGC ATGCAGAGTCCTCAGAGATGCAGATACCTCCCCCGGACTGC < 41bp 0.70599206648514 0.49294954383771 0.91912526 0.6288209 prediction 0.41198413297028 Functional Loss - CD22 ENSG00000012124 CDS Human protein_coding chr19:35837076 chr19:35837080 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_93388 0 0 0 0 2 CD22 chr19:35837054 3'AG 35837054 Downstream 27bp
chr19 35837080 35837080 1 + G T UCEC 35837076 + 35837056 35837096 41 ATGCAGAGTCCTCAGAGATGCAGAGACCTCCCCCGGACTGC ATGCAGAGTCCTCAGAGATGCAGATACCTCCCCCGGACTGC < 41bp 0.70599206648514 0.49294954383771 0.91912526 0.6288209 prediction 0.41198413297028 Functional Loss - CD22 ENSG00000012124 CDS Human protein_coding chr19:35837076 chr19:35837080 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_93388 0 0 0 0 2 CD22 chr19:35837138 5'GT 35837138 Upstream 59bp
chr7 99655395 99655395 1 + G A STAD 99655392 + 99655372 99655412 41 TCAGGAACTGCAAAGGAATCCCCGAGCAGCATGCAGCCACA TCAGGAACTGCAAAGGAATCCCCAAGCAGCATGCAGCCACA < 41bp 0.815488545459382 0.609500794428521 0.13086036 0.08155313 prediction 0.411975502061722 Functional Loss - ZSCAN21 ENSG00000166529 CDS Human protein_coding chr7:99655392 chr7:99655395 synonymous SNV . 0 24 hm5C_associated_SNPs_93390 0 0 0 0 1 ZSCAN21 chr7:99655321 3'AG 99655321 Downstream 75bp
chr17 18332387 18332387 1 + G A COAD 18332384 + 18332364 18332404 41 TGGCCTACCTGAAGAAGAACCACGAGGTGAGGTGGCTGGGG TGGCCTACCTGAAGAAGAACCACAAGGTGAGGTGGCTGGGG < 41bp 0.776584837333516 0.570597542159209 0.3771213 0.23653707 prediction 0.411974590348615 Functional Loss - KRT17P2 ENSG00000186831 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:18332384 chr17:18332387 . . 0 24 hm5C_associated_SNPs_93392 0 0 0 0 1 KRT17P2 chr17:18332389 5'GT 18332389 Upstream 3bp
chr10 8100708 8100708 1 + G A STAD 8100705 + 8100685 8100725 41 CCACCTACCCGCCCTACGTGCCCGAGTACAGCTCCGGACTC CCACCTACCCGCCCTACGTGCCCAAGTACAGCTCCGGACTC < 41bp 0.831604709181049 0.625617417985318 0.18609321 0.043079108 prediction 0.411974582391462 Functional Loss - GATA3 ENSG00000107485 CDS Human protein_coding chr10:8100705 chr10:8100708 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_93393 0 0 0 0 1 GATA3 chr10:8100804 5'GT 8100804 Upstream 97bp
chr11 60274227 60274227 1 + G A COAD 60274224 + 60274204 60274244 41 TCTGGAAAAGGCATTTCAGCCACGCTGATGATCTTCTCCCT TCTGGAAAAGGCATTTCAGCCACACTGATGATCTTCTCCCT < 41bp 0.705986835845617 0.465087771209287 0.27591008 0.36079636 prediction 0.411973671691235 Functional Loss - MS4A12 ENSG00000071203 CDS Human protein_coding chr11:60274224 chr11:60274227 synonymous SNV . 0 24 hm5C_associated_SNPs_93394 0 0 0 0 2 MS4A12 chr11:60274201 3'AG 60274201 Downstream 27bp
chr11 60274227 60274227 1 + G A COAD 60274224 + 60274204 60274244 41 TCTGGAAAAGGCATTTCAGCCACGCTGATGATCTTCTCCCT TCTGGAAAAGGCATTTCAGCCACACTGATGATCTTCTCCCT < 41bp 0.705986835845617 0.465087771209287 0.27591008 0.36079636 prediction 0.411973671691235 Functional Loss - MS4A12 ENSG00000071203 CDS Human protein_coding chr11:60274224 chr11:60274227 synonymous SNV . 0 24 hm5C_associated_SNPs_93394 0 0 0 0 2 MS4A12 chr11:60274311 5'GT 60274311 Upstream 85bp
chr17 2265551 2265551 1 + G T SARC 2265548 + 2265528 2265568 41 TGGACAAGGTCGTGCAATACCTGGCGGAAAACTGCAGGTGA TGGACAAGGTCGTGCAATACCTGTCGGAAAACTGCAGGTGA < 41bp 0.705967246358693 0.318422456419767 0.5594198 0.1700325 prediction 0.411934492717386 Functional Loss - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2265548 chr17:2265551 nonsynonymous SNV 0.215 2 24 hm5C_associated_SNPs_93406 0 0 1 0 1 SGSM2 chr17:2265564 5'GT 2265564 Upstream 14bp
chr1 36748214 36748214 1 + G A UCEC 36748211 + 36748191 36748231 41 TGGATCTCGCTCTTCTCGCTCAAGATCTGCATCAAGATCTC TGGATCTCGCTCTTCTCGCTCAAAATCTGCATCAAGATCTC < 41bp 0.705967235258985 0.459849434162013 0.43830225 0.22389352 prediction 0.41193447051797 Functional Loss - THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36748211 chr1:36748214 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_93407 0 0 1 0 2 THRAP3 chr1:36748134 3'AG 36748134 Downstream 81bp
chr1 36748214 36748214 1 + G A UCEC 36748211 + 36748191 36748231 41 TGGATCTCGCTCTTCTCGCTCAAGATCTGCATCAAGATCTC TGGATCTCGCTCTTCTCGCTCAAAATCTGCATCAAGATCTC < 41bp 0.705967235258985 0.459849434162013 0.43830225 0.22389352 prediction 0.41193447051797 Functional Loss - THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36748211 chr1:36748214 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_93407 0 0 1 0 2 THRAP3 chr1:36748301 5'GT 36748301 Upstream 88bp
chr1 110256088 110256088 1 + G A CESC 110256085 + 110256065 110256105 41 TGGTGGCCCAACTGAGCTTCCCCGGTTTCCCATCTATCCAG TGGTGGCCCAACTGAGCTTCCCCAGTTTCCCATCTATCCAG < 41bp 0.705957949939714 0.44636586867068 0.34369034 0.1054146 prediction 0.411915899879428 Functional Loss - GSTM5 ENSG00000134201 CDS Human protein_coding chr1:110256085 chr1:110256088 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_93413 0 0 0 0 1 GSTM5 chr1:110256187 5'GT 110256187 Upstream 100bp
chr2 95954033 95954033 1 + G A SKCM 95954030 + 95954010 95954050 41 AGCCGTGTGATCCTGTGTGACATGATGGCTGACCCCTGGGT AGCCGTGTGATCCTGTGTGACATAATGGCTGACCCCTGGGT < 41bp 0.705957911318638 0.457072097523576 0.19832477 0.13626033 prediction 0.411915822637276 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95954030 chr2:95954033 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_93414 0 0 0 0 2 PROM2 chr2:95953959 3'AG 95953959 Downstream 75bp
chr2 95954033 95954033 1 + G A SKCM 95954030 + 95954010 95954050 41 AGCCGTGTGATCCTGTGTGACATGATGGCTGACCCCTGGGT AGCCGTGTGATCCTGTGTGACATAATGGCTGACCCCTGGGT < 41bp 0.705957911318638 0.457072097523576 0.19832477 0.13626033 prediction 0.411915822637276 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95954030 chr2:95954033 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_93414 0 0 0 0 2 PROM2 chr2:95954048 5'GT 95954048 Upstream 16bp
chr5 167719269 167719269 1 + C T COAD 167719267 + 167719247 167719287 41 CACCACCAGCTGGATCGACCCGCGGGACAGGTAGGACCCTG CACCACCAGCTGGATCGACCCGTGGGACAGGTAGGACCCTG < 41bp 0.833119779037367 0.627163836006307 0.36246085 0.3461048 prediction 0.411911886062121 Functional Loss - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167719267 chr5:167719269 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_93418 0 0 0 0 1 WWC1 chr5:167719276 5'GT 167719276 Upstream 8bp
chr6 30587563 30587563 1 + C T BRCA 30587560 + 30587540 30587580 41 ACAAGGGTGGTGTACCCCCACAGCGGACTCGGAAGACATGT ACAAGGGTGGTGTACCCCCACAGTGGACTCGGAAGACATGT < 41bp 0.720234858319327 0.51428048086614 0.102182746 0.098619044 prediction 0.411908754906373 Functional Loss - MRPS18B ENSG00000204568 CDS Human protein_coding chr6:30587560 chr6:30587563 nonsynonymous SNV 0.947 3 24 hm5C_associated_SNPs_93422 0 0 1 0 2 MRPS18B chr6:30587486 3'AG 30587486 Downstream 78bp
chr6 30587563 30587563 1 + C T BRCA 30587560 + 30587540 30587580 41 ACAAGGGTGGTGTACCCCCACAGCGGACTCGGAAGACATGT ACAAGGGTGGTGTACCCCCACAGTGGACTCGGAAGACATGT < 41bp 0.720234858319327 0.51428048086614 0.102182746 0.098619044 prediction 0.411908754906373 Functional Loss - MRPS18B ENSG00000204568 CDS Human protein_coding chr6:30587560 chr6:30587563 nonsynonymous SNV 0.947 3 24 hm5C_associated_SNPs_93422 0 0 1 0 2 MRPS18B chr6:30587583 5'GT 30587583 Upstream 21bp
chr17 7909749 7909749 1 + G T LUSC 7909747 + 7909727 7909767 41 CAAGGGGCGTGGCAGAAGCGCGGGCTGCCGCAGGTGGCAGA CAAGGGGCGTGGCAGAAGCGCGTGCTGCCGCAGGTGGCAGA < 41bp 0.705952684805051 0.340874641111363 0.8974376 0.57441396 prediction 0.411905369610102 Functional Loss - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7909747 chr17:7909749 synonymous SNV . 0 23 hm5C_associated_SNPs_93425 0 0 0 0 1 GUCY2D chr17:7909681 3'AG 7909681 Downstream 69bp
chr1 20466690 20466690 1 + G T LUAD 20466686 + 20466666 20466706 41 CTGGGTATGAAGAAGTTCTTCACCGTGGCCATCCTTGCTGG CTGGGTATGAAGAAGTTCTTCACCTTGGCCATCCTTGCTGG < 41bp 0.732450159239165 0.526498219095276 0.3034608 0.16680142 prediction 0.411903880287778 Functional Loss - PLA2G2F ENSG00000158786 CDS Human protein_coding chr1:20466686 chr1:20466690 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_93427 0 0 0 0 2 PLA2G2F chr1:20466659 3'AG 20466659 Downstream 32bp
chr1 20466690 20466690 1 + G T LUAD 20466686 + 20466666 20466706 41 CTGGGTATGAAGAAGTTCTTCACCGTGGCCATCCTTGCTGG CTGGGTATGAAGAAGTTCTTCACCTTGGCCATCCTTGCTGG < 41bp 0.732450159239165 0.526498219095276 0.3034608 0.16680142 prediction 0.411903880287778 Functional Loss - PLA2G2F ENSG00000158786 CDS Human protein_coding chr1:20466686 chr1:20466690 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_93427 0 0 0 0 2 PLA2G2F chr1:20466711 5'GT 20466711 Upstream 22bp
chrX 21627285 21627285 1 + G A HNSC 21627282 + 21627262 21627302 41 CTTCTCATGAGGAGTTTCGCCAGGAAGTAACTGGGAGCAGT CTTCTCATGAGGAGTTTCGCCAGAAAGTAACTGGGAGCAGT < 41bp 0.780578978894022 0.574627567272912 0.52997154 0.30612805 prediction 0.41190282324222 Functional Loss - CNKSR2 ENSG00000149970 CDS Human protein_coding chrX:21627282 chrX:21627285 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_93428 0 0 0 0 1 CNKSR2 chrX:21627189 3'AG 21627189 Downstream 97bp
chr7 44079264 44079264 1 + T C rs561383481 44079263 + 44079243 44079283 41 TTGCCCACGTTCTGGACTGCCTGGAGGTGACAGCAGGAAGG TTGCCCACGTTCTGGACTGCCCGGAGGTGACAGCAGGAAGG < 41bp 0.756140884499436 0.550191226867575 0.43604872 0.77539253 prediction 0.411899315263721 Functional Loss - RASA4CP ENSG00000235314;ENSG00000228903 ncRNA_exonic;splicing Human lincRNA chr7:44079263 chr7:44079264 . . 0 22 hm5C_associated_SNPs_93429 0 0 0 1 1 LINC00957;RASA4CP chr7:44079298 5'GT 44079298 Upstream 35bp
chr11 65161819 65161819 1 + C T rs138537245 65161816 + 65161796 65161836 41 TACCCGTGCGACGTGGAGGACTGCGAGGCTCTGGGCGCCCT TACCCGTGCGACGTGGAGGACTGTGAGGCTCTGGGCGCCCT < 41bp 0.750853855127416 0.544906409772389 0.7161056 0.73696 prediction 0.411894890710055 Functional Loss - FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65161816 chr11:65161819 synonymous SNV . 0 24 hm5C_associated_SNPs_93430 0 0 1 0 2 FRMD8 chr11:65161730 3'AG 65161730 Downstream 90bp
chr11 65161819 65161819 1 + C T rs138537245 65161816 + 65161796 65161836 41 TACCCGTGCGACGTGGAGGACTGCGAGGCTCTGGGCGCCCT TACCCGTGCGACGTGGAGGACTGTGAGGCTCTGGGCGCCCT < 41bp 0.750853855127416 0.544906409772389 0.7161056 0.73696 prediction 0.411894890710055 Functional Loss - FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65161816 chr11:65161819 synonymous SNV . 0 24 hm5C_associated_SNPs_93430 0 0 1 0 2 FRMD8 chr11:65161896 5'GT 65161896 Upstream 78bp
chr1 27175193 27175193 1 + C T STAD 27175190 + 27175170 27175210 41 AAGCTGAAGTACTGCTTCACCTGCAAGATGTTCCGGCCACC AAGCTGAAGTACTGCTTCACCTGTAAGATGTTCCGGCCACC < 41bp 0.768462605939715 0.562518325330847 0.24360028 0.20422447 prediction 0.411888561217736 Functional Loss - ZDHHC18 ENSG00000204160 CDS Human protein_coding chr1:27175190 chr1:27175193 synonymous SNV . 0 24 hm5C_associated_SNPs_93434 0 0 0 0 2 ZDHHC18 chr1:27175099 3'AG 27175099 Downstream 95bp
chr1 27175193 27175193 1 + C T STAD 27175190 + 27175170 27175210 41 AAGCTGAAGTACTGCTTCACCTGCAAGATGTTCCGGCCACC AAGCTGAAGTACTGCTTCACCTGTAAGATGTTCCGGCCACC < 41bp 0.768462605939715 0.562518325330847 0.24360028 0.20422447 prediction 0.411888561217736 Functional Loss - ZDHHC18 ENSG00000204160 CDS Human protein_coding chr1:27175190 chr1:27175193 synonymous SNV . 0 24 hm5C_associated_SNPs_93434 0 0 0 0 2 ZDHHC18 chr1:27175248 5'GT 27175248 Upstream 56bp
chr3 138174089 138174089 1 + G A SKCM 138174086 + 138174066 138174106 41 ATGATCATGGAAAGCAAGTTCCGGGAGAAACTTGAGCCCAA ATGATCATGGAAAGCAAGTTCCGAGAGAAACTTGAGCCCAA < 41bp 0.705937919485576 0.462705068525225 0.9076705 0.6964552 prediction 0.411875838971151 Functional Loss - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138174086 chr3:138174089 synonymous SNV . 0 24 hm5C_associated_SNPs_93438 0 0 0 0 2 ESYT3 chr3:138174036 3'AG 138174036 Downstream 54bp
chr3 138174089 138174089 1 + G A SKCM 138174086 + 138174066 138174106 41 ATGATCATGGAAAGCAAGTTCCGGGAGAAACTTGAGCCCAA ATGATCATGGAAAGCAAGTTCCGAGAGAAACTTGAGCCCAA < 41bp 0.705937919485576 0.462705068525225 0.9076705 0.6964552 prediction 0.411875838971151 Functional Loss - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138174086 chr3:138174089 synonymous SNV . 0 24 hm5C_associated_SNPs_93438 0 0 0 0 2 ESYT3 chr3:138174170 5'GT 138174170 Upstream 82bp
chr15 89169933 89169933 1 + C T BLCA 89169931 + 89169911 89169951 41 TACCCGCTGGAGTGGCATCACTCGGCAGCACATGCGCAAGG TACCCGCTGGAGTGGCATCACTTGGCAGCACATGCGCAAGG < 41bp 0.859324247097126 0.653389587222606 0.084275335 0.13391113 prediction 0.41186931974904 Functional Loss - AEN ENSG00000181026 CDS Human protein_coding chr15:89169931 chr15:89169933 nonsynonymous SNV 0.990 1 23 hm5C_associated_SNPs_93439 0 0 1 0 1 AEN chr15:89169980 5'GT 89169980 Upstream 48bp
chr22 39425464 39425464 1 + C T BLCA 39425461 + 39425441 39425481 41 AACGAAAGCTGGCTGTGCTTCACCATGGAAGTTACAAAGCA AACGAAAGCTGGCTGTGCTTCACTATGGAAGTTACAAAGCA < 41bp 0.761616078383384 0.555681520506834 0.1519247 0.024051905 prediction 0.4118691157531 Functional Loss - APOBEC3D ENSG00000243811 CDS Human protein_coding chr22:39425461 chr22:39425464 synonymous SNV . 0 24 hm5C_associated_SNPs_93440 0 0 0 0 2 APOBEC3D chr22:39425368 3'AG 39425368 Downstream 97bp
chr22 39425464 39425464 1 + C T BLCA 39425461 + 39425441 39425481 41 AACGAAAGCTGGCTGTGCTTCACCATGGAAGTTACAAAGCA AACGAAAGCTGGCTGTGCTTCACTATGGAAGTTACAAAGCA < 41bp 0.761616078383384 0.555681520506834 0.1519247 0.024051905 prediction 0.4118691157531 Functional Loss - APOBEC3D ENSG00000243811 CDS Human protein_coding chr22:39425461 chr22:39425464 synonymous SNV . 0 24 hm5C_associated_SNPs_93440 0 0 0 0 2 APOBEC3D chr22:39425524 5'GT 39425524 Upstream 61bp
chr11 73536802 73536802 1 + C T COAD 73536800 + 73536780 73536820 41 CCTACAAGACAAAGCCCACCCACGGCATTGGAAAGTACAAG CCTACAAGACAAAGCCCACCCATGGCATTGGAAAGTACAAG < 41bp 0.705933759946835 0.497938860263265 0.012244582 0.015143067 prediction 0.41186751989367 Functional Loss - MRPL48 ENSG00000175581 CDS Human protein_coding chr11:73536800 chr11:73536802 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_93441 0 0 1 0 2 MRPL48 chr11:73536753 3'AG 73536753 Downstream 50bp
chr11 73536802 73536802 1 + C T COAD 73536800 + 73536780 73536820 41 CCTACAAGACAAAGCCCACCCACGGCATTGGAAAGTACAAG CCTACAAGACAAAGCCCACCCATGGCATTGGAAAGTACAAG < 41bp 0.705933759946835 0.497938860263265 0.012244582 0.015143067 prediction 0.41186751989367 Functional Loss - MRPL48 ENSG00000175581 CDS Human protein_coding chr11:73536800 chr11:73536802 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_93441 0 0 1 0 2 MRPL48 chr11:73536841 5'GT 73536841 Upstream 40bp
chr19 42828899 42828899 1 + G A BLCA 42828896 + 42828876 42828916 41 TCCCCTCCCTCAGCCCCTGCCCCGAGCGGCGCCGGATTCTG TCCCCTCCCTCAGCCCCTGCCCCAAGCGGCGCCGGATTCTG < 41bp 0.789246209488933 0.583312595636882 0.096512765 0.06389162 prediction 0.411867227704102 Functional Loss - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42828896 chr19:42828899 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_93442 0 0 1 0 1 TMEM145 chr19:42828889 3'AG 42828889 Downstream 11bp
chr7 6057485 6057485 1 + C T COAD 6057483 + 6057463 6057503 41 GACATCGTGATCAACGCAAACCCGGCCTCCCCTCCCCTCTC GACATCGTGATCAACGCAAACCTGGCCTCCCCTCCCCTCTC < 41bp 0.705930276448417 0.426199995059371 0.13811019 0.14458963 prediction 0.411860552896835 Functional Loss - AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6057483 chr7:6057485 nonsynonymous SNV 0.948 4 23 hm5C_associated_SNPs_93444 0 0 1 0 1 AIMP2 chr7:6057445 3'AG 6057445 Downstream 41bp
chr7 6057486 6057486 1 + G T OV 6057483 + 6057463 6057503 41 GACATCGTGATCAACGCAAACCCGGCCTCCCCTCCCCTCTC GACATCGTGATCAACGCAAACCCTGCCTCCCCTCCCCTCTC < 41bp 0.705930276448417 0.296196127929584 0.13811019 0.018032521 prediction 0.411860552896835 Functional Loss - AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6057483 chr7:6057486 synonymous SNV . 0 24 hm5C_associated_SNPs_93445 0 0 1 0 1 AIMP2 chr7:6057445 3'AG 6057445 Downstream 42bp
chr17 37034433 37034433 1 + C T COAD 37034431 + 37034411 37034451 41 GAGAAGAAGCCCTACTGCAACGCGTGAGTCCTGTTCTGGGC GAGAAGAAGCCCTACTGCAACGTGTGAGTCCTGTTCTGGGC < 41bp 0.705926446567921 0.479769027244902 0.100645304 0.105855525 prediction 0.411852893135843 Functional Loss - LASP1 ENSG00000002834 CDS Human protein_coding chr17:37034431 chr17:37034433 nonsynonymous SNV 0.963 1 23 hm5C_associated_SNPs_93447 0 0 1 0 2 LASP1 chr17:37034339 3'AG 37034339 Downstream 95bp
chr17 37034433 37034433 1 + C T COAD 37034431 + 37034411 37034451 41 GAGAAGAAGCCCTACTGCAACGCGTGAGTCCTGTTCTGGGC GAGAAGAAGCCCTACTGCAACGTGTGAGTCCTGTTCTGGGC < 41bp 0.705926446567921 0.479769027244902 0.100645304 0.105855525 prediction 0.411852893135843 Functional Loss - LASP1 ENSG00000002834 CDS Human protein_coding chr17:37034431 chr17:37034433 nonsynonymous SNV 0.963 1 23 hm5C_associated_SNPs_93447 0 0 1 0 2 LASP1 chr17:37034433 5'GT 37034433 Upstream 1bp
chr19 13879234 13879234 1 + C T UCEC 13879231 + 13879211 13879251 41 CCAGGCAGAGGGAACTGCCACTGCGAGGGCCCCTGGGCGGG CCAGGCAGAGGGAACTGCCACTGTGAGGGCCCCTGGGCGGG < 41bp 0.715765836491364 0.50984006846398 0.2610405 0.1783168 prediction 0.411851536054769 Functional Loss - MRI1 ENSG00000037757 CDS Human protein_coding chr19:13879231 chr19:13879234 stopgain 0.001 0 24 hm5C_associated_SNPs_93448 0 0 1 0 2 MRI1 chr19:13879173 3'AG 13879173 Downstream 62bp
chr19 13879234 13879234 1 + C T UCEC 13879231 + 13879211 13879251 41 CCAGGCAGAGGGAACTGCCACTGCGAGGGCCCCTGGGCGGG CCAGGCAGAGGGAACTGCCACTGTGAGGGCCCCTGGGCGGG < 41bp 0.715765836491364 0.50984006846398 0.2610405 0.1783168 prediction 0.411851536054769 Functional Loss - MRI1 ENSG00000037757 CDS Human protein_coding chr19:13879231 chr19:13879234 stopgain 0.001 0 24 hm5C_associated_SNPs_93448 0 0 1 0 2 MRI1 chr19:13879261 5'GT 13879261 Upstream 28bp
chr15 40756744 40756744 1 + G A STAD 40756741 + 40756721 40756761 41 GAGGCCGCAGTCCCAGCATGCACGAGGTGAGCTGCCTGGCA GAGGCCGCAGTCCCAGCATGCACAAGGTGAGCTGCCTGGCA < 41bp 0.819497709630505 0.613579147515768 0.24436921 0.077492505 prediction 0.411837124229473 Functional Loss - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40756741 chr15:40756744 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_93451 0 0 1 0 2 BAHD1 chr15:40756670 3'AG 40756670 Downstream 75bp
chr15 40756744 40756744 1 + G A STAD 40756741 + 40756721 40756761 41 GAGGCCGCAGTCCCAGCATGCACGAGGTGAGCTGCCTGGCA GAGGCCGCAGTCCCAGCATGCACAAGGTGAGCTGCCTGGCA < 41bp 0.819497709630505 0.613579147515768 0.24436921 0.077492505 prediction 0.411837124229473 Functional Loss - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40756741 chr15:40756744 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_93451 0 0 1 0 2 BAHD1 chr15:40756746 5'GT 40756746 Upstream 3bp
chr17 46023716 46023716 1 + G A OV 46023713 + 46023693 46023733 41 TGAGAAAGAAAAATGAGGAACTGGAACAGCTCTACCAGGAT TGAGAAAGAAAAATGAGGAACTGAAACAGCTCTACCAGGAT < 41bp 0.705914439480714 0.471876387547214 0.32253408 0.6063594 prediction 0.411828878961429 Functional Loss - PNPO ENSG00000108439 CDS Human protein_coding chr17:46023713 chr17:46023716 nonsynonymous SNV 0.983 1 24 hm5C_associated_SNPs_93452 0 0 1 0 2 PNPO chr17:46023689 3'AG 46023689 Downstream 28bp
chr17 46023716 46023716 1 + G A OV 46023713 + 46023693 46023733 41 TGAGAAAGAAAAATGAGGAACTGGAACAGCTCTACCAGGAT TGAGAAAGAAAAATGAGGAACTGAAACAGCTCTACCAGGAT < 41bp 0.705914439480714 0.471876387547214 0.32253408 0.6063594 prediction 0.411828878961429 Functional Loss - PNPO ENSG00000108439 CDS Human protein_coding chr17:46023713 chr17:46023716 nonsynonymous SNV 0.983 1 24 hm5C_associated_SNPs_93452 0 0 1 0 2 PNPO chr17:46023759 5'GT 46023759 Upstream 44bp
chr16 72143385 72143385 1 + G A UCEC 72143382 + 72143362 72143402 41 CTGGGCCCCATGTTCTATAGCGTGAAACAGGCGGGCAAGTC CTGGGCCCCATGTTCTATAGCGTAAAACAGGCGGGCAAGTC < 41bp 0.705912845868542 0.458475220528677 0.78103864 0.38395467 prediction 0.411825691737085 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72143382 chr16:72143385 synonymous SNV . 0 24 hm5C_associated_SNPs_93454 0 0 1 0 2 DHX38 chr16:72143314 3'AG 72143314 Downstream 72bp
chr16 72143385 72143385 1 + G A UCEC 72143382 + 72143362 72143402 41 CTGGGCCCCATGTTCTATAGCGTGAAACAGGCGGGCAAGTC CTGGGCCCCATGTTCTATAGCGTAAAACAGGCGGGCAAGTC < 41bp 0.705912845868542 0.458475220528677 0.78103864 0.38395467 prediction 0.411825691737085 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72143382 chr16:72143385 synonymous SNV . 0 24 hm5C_associated_SNPs_93454 0 0 1 0 2 DHX38 chr16:72143409 5'GT 72143409 Upstream 25bp
chr2 232018374 232018374 1 + G A LUSC 232018371 + 232018351 232018391 41 CTATTCTGGCCCAGGGCATACTGGATGCAGGTAAATGTTTT CTATTCTGGCCCAGGGCATACTGAATGCAGGTAAATGTTTT < 41bp 0.705910542587442 0.483441620104043 0.1702038 0.12694702 prediction 0.411821085174884 Functional Loss - PSMD1 ENSG00000173692 CDS Human protein_coding chr2:232018371 chr2:232018374 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_93458 0 0 1 0 2 PSMD1 chr2:232018278 3'AG 232018278 Downstream 97bp
chr2 232018374 232018374 1 + G A LUSC 232018371 + 232018351 232018391 41 CTATTCTGGCCCAGGGCATACTGGATGCAGGTAAATGTTTT CTATTCTGGCCCAGGGCATACTGAATGCAGGTAAATGTTTT < 41bp 0.705910542587442 0.483441620104043 0.1702038 0.12694702 prediction 0.411821085174884 Functional Loss - PSMD1 ENSG00000173692 CDS Human protein_coding chr2:232018371 chr2:232018374 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_93458 0 0 1 0 2 PSMD1 chr2:232018380 5'GT 232018380 Upstream 7bp
chr2 32361990 32361990 1 + G A UCEC 32361987 + 32361967 32362007 41 GTGAAAGAAGAGAAGGGGAGCACGATGCTAGTAGACGCCTA GTGAAAGAAGAGAAGGGGAGCACAATGCTAGTAGACGCCTA < 41bp 0.774735988539745 0.568826417289123 0.32083172 0.36325502 prediction 0.411819142501246 Functional Loss - SPAST ENSG00000021574 CDS Human protein_coding chr2:32361987 chr2:32361990 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_93459 0 0 0 0 2 SPAST chr2:32361946 3'AG 32361946 Downstream 45bp
chr2 32361990 32361990 1 + G A UCEC 32361987 + 32361967 32362007 41 GTGAAAGAAGAGAAGGGGAGCACGATGCTAGTAGACGCCTA GTGAAAGAAGAGAAGGGGAGCACAATGCTAGTAGACGCCTA < 41bp 0.774735988539745 0.568826417289123 0.32083172 0.36325502 prediction 0.411819142501246 Functional Loss - SPAST ENSG00000021574 CDS Human protein_coding chr2:32361987 chr2:32361990 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_93459 0 0 0 0 2 SPAST chr2:32362037 5'GT 32362037 Upstream 48bp
chr12 110922933 110922933 1 + G A BLCA 110922930 + 110922910 110922950 41 ACTCACACATAGCTAAGCTGCAAGAGTTATGGAAAACTCCC ACTCACACATAGCTAAGCTGCAAAAGTTATGGAAAACTCCC < 41bp 0.70590708387602 0.483146528236416 0.18443522 0.049769938 prediction 0.411814167752041 Functional Loss - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110922930 chr12:110922933 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_93460 0 0 1 0 2 FAM216A chr12:110922883 3'AG 110922883 Downstream 51bp
chr12 110922933 110922933 1 + G A BLCA 110922930 + 110922910 110922950 41 ACTCACACATAGCTAAGCTGCAAGAGTTATGGAAAACTCCC ACTCACACATAGCTAAGCTGCAAAAGTTATGGAAAACTCCC < 41bp 0.70590708387602 0.483146528236416 0.18443522 0.049769938 prediction 0.411814167752041 Functional Loss - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110922930 chr12:110922933 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_93460 0 0 1 0 2 FAM216A chr12:110923004 5'GT 110923004 Upstream 72bp
chr7 158715138 158715138 1 + C T LUSC 158715136 + 158715116 158715156 41 TGGTCTCCGTTCACGACTTACCCGAGAAGAGCTTTGTGCCC TGGTCTCCGTTCACGACTTACCTGAGAAGAGCTTTGTGCCC < 41bp 0.705904531941317 0.414892641535262 0.07337898 0.06841126 prediction 0.411809063882634 Functional Loss - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158715136 chr7:158715138 synonymous SNV . 0 23 hm5C_associated_SNPs_93462 0 0 1 0 1 WDR60 chr7:158715068 3'AG 158715068 Downstream 71bp
chr8 133844543 133844543 1 + G A rs184113048 133844540 + 133844520 133844560 41 AAGGTGCTCTTCTCCACTAACTCGATCTTCTGGGAGTTCTC AAGGTGCTCTTCTCCACTAACTCAATCTTCTGGGAGTTCTC < 41bp 0.778185768048147 0.572284291760193 0.42267275 0.76077074 prediction 0.411802952575908 Functional Loss - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133844540 chr8:133844543 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_93464 0 0 1 0 1 PHF20L1 chr8:133844480 3'AG 133844480 Downstream 64bp
chr1 55521671 55521671 1 + G T UCEC 55521668 + 55521648 55521688 41 TGGCTTTGTTCCTCCCAGGCCTGGAGTTTATTCGGAAAAGC TGGCTTTGTTCCTCCCAGGCCTGTAGTTTATTCGGAAAAGC < 41bp 0.705900829809525 0.301709385314323 0.3578754 0.2729397 prediction 0.411801659619049 Functional Loss - PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55521668 chr1:55521671 stopgain 0.998 0 24 hm5C_associated_SNPs_93465 0 0 1 0 1 PCSK9 chr1:55521666 3'AG 55521666 Downstream 6bp
chr6 7862645 7862645 1 + C T SKCM 7862643 + 7862623 7862663 41 AGTGAGGTGCACGTGCGCACCACCAGGTCAGCCTCCAGCCG AGTGAGGTGCACGTGCGCACCATCAGGTCAGCCTCCAGCCG < 41bp 0.861407469375116 0.655510828556211 0.31229544 0.2539526 prediction 0.411793281637809 Functional Loss - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7862643 chr6:7862645 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_93467 0 0 1 0 1 BMP6 chr6:7862731 5'GT 7862731 Upstream 87bp
chr20 42680112 42680112 1 + C T BLCA 42680109 + 42680089 42680129 41 CATCGCCCACAGCTCCCCATCACCGCCGGGGAGCAAGTCAG CATCGCCCACAGCTCCCCATCACTGCCGGGGAGCAAGTCAG < 41bp 0.705894799230935 0.484782038527243 0.24753055 0.08277628 prediction 0.41178959846187 Functional Loss - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42680109 chr20:42680112 nonsynonymous SNV 0.745 4 24 hm5C_associated_SNPs_93469 0 0 0 0 1 TOX2 chr20:42680185 5'GT 42680185 Upstream 74bp
chr19 50302734 50302734 1 + C T PRAD 50302731 + 50302711 50302751 41 GCCGTCAAGACGCACATTGACACCGTCATCAATGCCCTCAA GCCGTCAAGACGCACATTGACACTGTCATCAATGCCCTCAA < 41bp 0.749687750619706 0.543796539841849 0.0534949 0.033937216 prediction 0.411782421555713 Functional Loss - AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50302731 chr19:50302734 synonymous SNV . 0 24 hm5C_associated_SNPs_93472 0 0 1 0 1 AP2A1 chr19:50302752 5'GT 50302752 Upstream 19bp
chr5 1216693 1216693 1 + C T COAD 1216691 + 1216671 1216711 41 AGCAACAACTGCGAGAAGGACTCGGTGATTGTGTCCATCAT AGCAACAACTGCGAGAAGGACTTGGTGATTGTGTCCATCAT < 41bp 0.705889698408324 0.417629398873157 0.15745625 0.17849314 prediction 0.411779396816648 Functional Loss - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1216691 chr5:1216693 nonsynonymous SNV 0.837 1 23 hm5C_associated_SNPs_93475 0 0 0 0 1 SLC6A19 chr5:1216673 3'AG 1216673 Downstream 21bp
chr10 134909254 134909254 1 + G A UCEC 134909251 + 134909231 134909271 41 TCAGGAGGGAAGCAGGAGCTCTCGGGCCCGCTGGCTGCCTG TCAGGAGGGAAGCAGGAGCTCTCAGGCCCGCTGGCTGCCTG < 41bp 0.78731863188281 0.581431292000616 0.7250944 0.31128004 prediction 0.411774679764388 Functional Loss - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134909251 chr10:134909254 synonymous SNV . 0 24 hm5C_associated_SNPs_93476 0 0 0 0 2 ADGRA1 chr10:134909155 3'AG 134909155 Downstream 100bp
chr10 134909254 134909254 1 + G A UCEC 134909251 + 134909231 134909271 41 TCAGGAGGGAAGCAGGAGCTCTCGGGCCCGCTGGCTGCCTG TCAGGAGGGAAGCAGGAGCTCTCAGGCCCGCTGGCTGCCTG < 41bp 0.78731863188281 0.581431292000616 0.7250944 0.31128004 prediction 0.411774679764388 Functional Loss - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134909251 chr10:134909254 synonymous SNV . 0 24 hm5C_associated_SNPs_93476 0 0 0 0 2 ADGRA1 chr10:134909284 5'GT 134909284 Upstream 31bp
chr8 37914651 37914651 1 + T C LIHC 37914650 + 37914630 37914670 41 GATGGAGTGTCGGAACTCACCTGTGACCAAAACACCCCCAA GATGGAGTGTCGGAACTCACCCGTGACCAAAACACCCCCAA < 41bp 0.705886987732158 0.455340832614264 0.28403908 0.31093174 prediction 0.411773975464317 Functional Loss - EIF4EBP1 ENSG00000187840 CDS Human protein_coding chr8:37914650 chr8:37914651 synonymous SNV . 0 22 hm5C_associated_SNPs_93477 0 0 1 0 1 EIF4EBP1 chr8:37914599 3'AG 37914599 Downstream 53bp
chr7 142013029 142013029 1 + G T UCEC 142013026 + 142013006 142013046 41 CAGAGGCCCCATCTCAGACCCGAGGCTAGCATGGGCTGCAG CAGAGGCCCCATCTCAGACCCGATGCTAGCATGGGCTGCAG < 41bp 0.705883967364751 0.336881133822366 0.9128449 0.8903208 prediction 0.411767934729501 Functional Loss - TRY2P;MTRNR2L6 ENSG00000211710 UTR5 Human TR_V_gene chr7:142013026 chr7:142013029 . . 0 24 hm5C_associated_SNPs_93481 0 0 0 0 1 TRY2P;MTRNR2L6 chr7:142013084 5'GT 142013084 Upstream 56bp
chr15 91184403 91184403 1 + C T GBM 91184400 + 91184380 91184420 41 AGACCAAGCCCGTATTCCAACTGCGGGAGTCTCCCGAACAC AGACCAAGCCCGTATTCCAACTGTGGGAGTCTCCCGAACAC < 41bp 0.777447949707268 0.571565794343345 0.2801051 0.23604423 prediction 0.411764310727847 Functional Loss - CRTC3 ENSG00000140577 CDS Human protein_coding chr15:91184400 chr15:91184403 synonymous SNV . 0 24 hm5C_associated_SNPs_93483 0 0 1 0 2 CRTC3 chr15:91184329 3'AG 91184329 Downstream 75bp
chr15 91184403 91184403 1 + C T GBM 91184400 + 91184380 91184420 41 AGACCAAGCCCGTATTCCAACTGCGGGAGTCTCCCGAACAC AGACCAAGCCCGTATTCCAACTGTGGGAGTCTCCCGAACAC < 41bp 0.777447949707268 0.571565794343345 0.2801051 0.23604423 prediction 0.411764310727847 Functional Loss - CRTC3 ENSG00000140577 CDS Human protein_coding chr15:91184400 chr15:91184403 synonymous SNV . 0 24 hm5C_associated_SNPs_93483 0 0 1 0 2 CRTC3 chr15:91184431 5'GT 91184431 Upstream 29bp
chr3 9969873 9969873 1 + C T SKCM 9969870 + 9969850 9969890 41 GTGTGGCCTCTGGAACCTGACTCCGTTAGGACGAACATCTG GTGTGGCCTCTGGAACCTGACTCTGTTAGGACGAACATCTG < 41bp 0.748789283887733 0.54290717950389 0.18113539 0.09722015 prediction 0.411764208767687 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9969870 chr3:9969873 synonymous SNV . 0 24 hm5C_associated_SNPs_93484 0 0 1 2 1 IL17RC chr3:9969850 3'AG 9969850 Downstream 24bp
chr10 88422103 88422103 1 + C T COAD 88422100 + 88422080 88422120 41 ACCCCAGCTACCGCTCCACCCACCGCTCCACGCTGACCAGC ACCCCAGCTACCGCTCCACCCACTGCTCCACGCTGACCAGC < 41bp 0.724426077429284 0.518544099272134 0.1654453 0.23014733 prediction 0.4117639563143 Functional Loss - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88422100 chr10:88422103 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_93485 0 0 0 0 1 OPN4 chr10:88422189 5'GT 88422189 Upstream 87bp
chr1 229431640 229431640 1 + C T GBM 229431638 + 229431618 229431658 41 GAGGCGCGGCCGGGGCTCTCCTCGTCTATGATATCACCAGG GAGGCGCGGCCGGGGCTCTCCTTGTCTATGATATCACCAGG < 41bp 0.868836263818207 0.662957979429836 0.40023527 0.15866885 prediction 0.411756568776741 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229431638 chr1:229431640 synonymous SNV . 0 23 hm5C_associated_SNPs_93490 0 0 1 3 2 RAB4A chr1:229431595 3'AG 229431595 Downstream 46bp
chr1 229431640 229431640 1 + C T GBM 229431638 + 229431618 229431658 41 GAGGCGCGGCCGGGGCTCTCCTCGTCTATGATATCACCAGG GAGGCGCGGCCGGGGCTCTCCTTGTCTATGATATCACCAGG < 41bp 0.868836263818207 0.662957979429836 0.40023527 0.15866885 prediction 0.411756568776741 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229431638 chr1:229431640 synonymous SNV . 0 23 hm5C_associated_SNPs_93490 0 0 1 3 2 RAB4A chr1:229431657 5'GT 229431657 Upstream 18bp
chr7 12675690 12675690 1 + G A rs35385652 12675687 + 12675667 12675707 41 TAGGCAAGGAGCAAATGCCACACGAGATGAGCTGACAACAT TAGGCAAGGAGCAAATGCCACACAAGATGAGCTGACAACAT < 41bp 0.793692185205894 0.587814185093839 0.08953732 0.018004537 prediction 0.411756000224111 Functional Loss - SCIN ENSG00000006747 CDS Human protein_coding chr7:12675687 chr7:12675690 nonsynonymous SNV 0.217 1 24 hm5C_associated_SNPs_93491 0 0 1 0 2 SCIN chr7:12675670 3'AG 12675670 Downstream 21bp
chr7 12675690 12675690 1 + G A rs35385652 12675687 + 12675667 12675707 41 TAGGCAAGGAGCAAATGCCACACGAGATGAGCTGACAACAT TAGGCAAGGAGCAAATGCCACACAAGATGAGCTGACAACAT < 41bp 0.793692185205894 0.587814185093839 0.08953732 0.018004537 prediction 0.411756000224111 Functional Loss - SCIN ENSG00000006747 CDS Human protein_coding chr7:12675687 chr7:12675690 nonsynonymous SNV 0.217 1 24 hm5C_associated_SNPs_93491 0 0 1 0 2 SCIN chr7:12675760 5'GT 12675760 Upstream 71bp
chr1 47279584 47279584 1 + G A SKCM 47279581 + 47279561 47279601 41 TCCTCCTACCCTCTGCTTAGCAGGGACAGCAGCTACTACCT TCCTCCTACCCTCTGCTTAGCAGAGACAGCAGCTACTACCT < 41bp 0.826013897026968 0.620143041272682 0.92948174 0.9069714 prediction 0.411741711508572 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47279581 chr1:47279584 synonymous SNV . 0 24 hm5C_associated_SNPs_93494 0 0 0 0 2 CYP4B1 chr1:47279581 3'AG 47279581 Downstream 4bp
chr1 47279584 47279584 1 + G A SKCM 47279581 + 47279561 47279601 41 TCCTCCTACCCTCTGCTTAGCAGGGACAGCAGCTACTACCT TCCTCCTACCCTCTGCTTAGCAGAGACAGCAGCTACTACCT < 41bp 0.826013897026968 0.620143041272682 0.92948174 0.9069714 prediction 0.411741711508572 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47279581 chr1:47279584 synonymous SNV . 0 24 hm5C_associated_SNPs_93494 0 0 0 0 2 CYP4B1 chr1:47279584 3'AG 47279584 Downstream 1bp
chr22 39427956 39427956 1 + C T SKCM 39427953 + 39427933 39427973 41 AGCCTGAGTCAGGAAGGGGCCTCCGTGAAGATCATGGGCTA AGCCTGAGTCAGGAAGGGGCCTCTGTGAAGATCATGGGCTA < 41bp 0.742862644069516 0.536993030681312 0.36095387 0.19877714 prediction 0.411739226776408 Functional Loss - APOBEC3D ENSG00000243811 CDS Human protein_coding chr22:39427953 chr22:39427956 synonymous SNV . 0 24 hm5C_associated_SNPs_93496 0 0 0 0 1 APOBEC3D chr22:39427978 5'GT 39427978 Upstream 23bp
chr17 74464925 74464925 1 + C T UCEC 74464922 + 74464902 74464942 41 GCTGTCAGCGGCGCCACACACTCCCTGCCAGTGAGTTTCGC GCTGTCAGCGGCGCCACACACTCTCTGCCAGTGAGTTTCGC < 41bp 0.705868579403445 0.484089848568144 0.24192286 0.22995105 prediction 0.411737158806889 Functional Loss - AANAT ENSG00000129673 CDS Human protein_coding chr17:74464922 chr17:74464925 nonsynonymous SNV 0.201 4 24 hm5C_associated_SNPs_93497 0 0 0 0 1 AANAT chr17:74464991 5'GT 74464991 Upstream 67bp
chr10 50817210 50817210 1 + G C rs80200823 50817207 + 50817187 50817227 41 AGCTCAGCCTGTCAGCTGAGCACGGGCGCCTCAAGGGGTGC AGCTCAGCCTGTCAGCTGAGCACCGGCGCCTCAAGGGGTGC < 41bp 0.722891948962134 0.517030725224013 0.878453 0.5672984 prediction 0.411722447476243 Functional Loss - CHAT ENSG00000070748 UTR5 Human protein_coding chr10:50817207 chr10:50817210 . . 0 24 hm5C_associated_SNPs_93499 0 0 0 0 1 CHAT chr10:50817245 5'GT 50817245 Upstream 36bp
chr2 233498631 233498631 1 + C T PRAD 233498629 + 233498609 233498649 41 CAACGAGGGCGCTGCGCGGCCCCGGCGCTGCAGGGTCTTCA CAACGAGGGCGCTGCGCGGCCCTGGCGCTGCAGGGTCTTCA < 41bp 0.705861029311746 0.456503940602603 0.08980328 0.09623715 prediction 0.411722058623491 Functional Loss - EFHD1 ENSG00000115468 CDS Human protein_coding chr2:233498629 chr2:233498631 nonsynonymous SNV 0.469 2 23 hm5C_associated_SNPs_93500 0 0 0 0 1 EFHD1 chr2:233498716 5'GT 233498716 Upstream 86bp
chr19 55224639 55224639 1 + G A COAD 55224636 + 55224616 55224656 41 ACACAGTGGAGAATCTCATCCGCGTGGCTGTGGCTGGCTTG ACACAGTGGAGAATCTCATCCGCATGGCTGTGGCTGGCTTG < 41bp 0.786165112092205 0.580304995658009 0.32098806 0.22532031 prediction 0.411720232868392 Functional Loss - LILRP2 ENSG00000170858 ncRNA_exonic Human transcribed_processed_pseudogene chr19:55224636 chr19:55224639 . . 0 24 hm5C_associated_SNPs_93501 0 0 0 0 1 LILRP2 chr19:55224598 3'AG 55224598 Downstream 42bp
chr14 65054073 65054073 1 + G A TGCT 65054070 + 65054050 65054090 41 TCAGGAGGGGAAAAGAAACGCATGACTTTTGTTCAGTTCAG TCAGGAGGGGAAAAGAAACGCATAACTTTTGTTCAGTTCAG < 41bp 0.705857365230649 0.473279020218872 0.23782739 0.1534585 prediction 0.411714730461298 Functional Loss - PPP1R36 ENSG00000165807 CDS Human protein_coding chr14:65054070 chr14:65054073 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_93504 0 0 0 0 1 PPP1R36 chr14:65054090 5'GT 65054090 Upstream 18bp
chr9 131476616 131476616 1 + C T UCEC 131476613 + 131476593 131476633 41 GCCCTCGGACCCCAACAACACTGCGAGAGGCCTCTGACCCT GCCCTCGGACCCCAACAACACTGTGAGAGGCCTCTGACCCT < 41bp 0.733853324812075 0.528001525866811 0.122174054 0.11952537 prediction 0.411703597890527 Functional Loss - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131476613 chr9:131476616 stopgain 0.000 0 24 hm5C_associated_SNPs_93511 0 0 0 0 1 PKN3 chr9:131476644 5'GT 131476644 Upstream 29bp
chr12 111078908 111078908 1 + G T SARC 111078906 + 111078886 111078926 41 TTCGTTCTGGGGACAGTTAGCAGCGTAGTGGTCCCACTGCA TTCGTTCTGGGGACAGTTAGCATCGTAGTGGTCCCACTGCA < 41bp 0.705851323733662 0.364809993718035 0.8913361 0.40662074 prediction 0.411702647467323 Functional Loss - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111078906 chr12:111078908 nonsynonymous SNV 0.074 3 23 hm5C_associated_SNPs_93512 0 0 0 0 2 TCTN1 chr12:111078829 3'AG 111078829 Downstream 80bp
chr12 111078908 111078908 1 + G T SARC 111078906 + 111078886 111078926 41 TTCGTTCTGGGGACAGTTAGCAGCGTAGTGGTCCCACTGCA TTCGTTCTGGGGACAGTTAGCATCGTAGTGGTCCCACTGCA < 41bp 0.705851323733662 0.364809993718035 0.8913361 0.40662074 prediction 0.411702647467323 Functional Loss - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111078906 chr12:111078908 nonsynonymous SNV 0.074 3 23 hm5C_associated_SNPs_93512 0 0 0 0 2 TCTN1 chr12:111078954 5'GT 111078954 Upstream 47bp
chr5 159659202 159659202 1 + C T STAD 159659199 + 159659179 159659219 41 TTCACTTGGTCCCAGCACTACTCCGGGGGCCACACCATGAC TTCACTTGGTCCCAGCACTACTCTGGGGGCCACACCATGAC < 41bp 0.790724473261937 0.584873575692032 0.3185668 0.30148232 prediction 0.411701795139809 Functional Loss - FABP6 ENSG00000170231 CDS Human protein_coding chr5:159659199 chr5:159659202 synonymous SNV . 0 24 hm5C_associated_SNPs_93514 0 0 0 0 2 FABP6 chr5:159659105 3'AG 159659105 Downstream 98bp
chr5 159659202 159659202 1 + C T STAD 159659199 + 159659179 159659219 41 TTCACTTGGTCCCAGCACTACTCCGGGGGCCACACCATGAC TTCACTTGGTCCCAGCACTACTCTGGGGGCCACACCATGAC < 41bp 0.790724473261937 0.584873575692032 0.3185668 0.30148232 prediction 0.411701795139809 Functional Loss - FABP6 ENSG00000170231 CDS Human protein_coding chr5:159659199 chr5:159659202 synonymous SNV . 0 24 hm5C_associated_SNPs_93514 0 0 0 0 2 FABP6 chr5:159659280 5'GT 159659280 Upstream 79bp
chr14 69813880 69813880 1 + G A UCEC 69813877 + 69813857 69813897 41 GGGATCTGCAGAGGGTCTGCCAAGAACCCGCAGCCCGCCCA GGGATCTGCAGAGGGTCTGCCAAAAACCCGCAGCCCGCCCA < 41bp 0.817752082254554 0.611903189275152 0.82708067 0.7702888 prediction 0.411697785958804 Functional Loss - GALNT16 ENSG00000100626 CDS Human protein_coding chr14:69813877 chr14:69813880 synonymous SNV . 0 24 hm5C_associated_SNPs_93515 0 0 0 0 1 GALNT16 chr14:69813898 5'GT 69813898 Upstream 19bp
chr1 234452368 234452368 1 + C T SKCM 234452365 + 234452345 234452385 41 CAGATTGTGGCCGCCATCCTCGCCATCGCTGGCATTGTGAT CAGATTGTGGCCGCCATCCTCGCTATCGCTGGCATTGTGAT < 41bp 0.767246071254889 0.561401950217681 0.73152924 0.18314844 prediction 0.411688242074415 Functional Loss - SLC35F3 ENSG00000183780 CDS Human protein_coding chr1:234452365 chr1:234452368 synonymous SNV . 0 24 hm5C_associated_SNPs_93516 0 0 0 0 1 SLC35F3 chr1:234452348 3'AG 234452348 Downstream 21bp
chr2 101095845 101095845 1 + G A UCEC 101095842 + 101095822 101095862 41 CAGTGCATCCTCTAATGCACCTGGCTGCCAAGCTCGCCAAC CAGTGCATCCTCTAATGCACCTGACTGCCAAGCTCGCCAAC < 41bp 0.70584134773877 0.449195692719413 0.30466214 0.10411075 prediction 0.411682695477541 Functional Loss - NMS ENSG00000204640 CDS Human protein_coding chr2:101095842 chr2:101095845 nonsynonymous SNV 0.679 3 24 hm5C_associated_SNPs_93519 0 0 0 0 2 NMS chr2:101095815 3'AG 101095815 Downstream 31bp
chr2 101095845 101095845 1 + G A UCEC 101095842 + 101095822 101095862 41 CAGTGCATCCTCTAATGCACCTGGCTGCCAAGCTCGCCAAC CAGTGCATCCTCTAATGCACCTGACTGCCAAGCTCGCCAAC < 41bp 0.70584134773877 0.449195692719413 0.30466214 0.10411075 prediction 0.411682695477541 Functional Loss - NMS ENSG00000204640 CDS Human protein_coding chr2:101095842 chr2:101095845 nonsynonymous SNV 0.679 3 24 hm5C_associated_SNPs_93519 0 0 0 0 2 NMS chr2:101095889 5'GT 101095889 Upstream 45bp
chr11 60230539 60230539 1 + G A HNSC 60230536 + 60230516 60230556 41 GGGTCTTCTGATGATCCCAGCAGGGATCTATGCACCCATCT GGGTCTTCTGATGATCCCAGCAGAGATCTATGCACCCATCT < 41bp 0.828301065259795 0.622460009413869 0.8559065 0.40761864 prediction 0.411682111691852 Functional Loss - MS4A1 ENSG00000156738 CDS Human protein_coding chr11:60230536 chr11:60230539 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_93520 0 0 0 0 2 MS4A1 chr11:60230475 3'AG 60230475 Downstream 65bp
chr11 60230539 60230539 1 + G A HNSC 60230536 + 60230516 60230556 41 GGGTCTTCTGATGATCCCAGCAGGGATCTATGCACCCATCT GGGTCTTCTGATGATCCCAGCAGAGATCTATGCACCCATCT < 41bp 0.828301065259795 0.622460009413869 0.8559065 0.40761864 prediction 0.411682111691852 Functional Loss - MS4A1 ENSG00000156738 CDS Human protein_coding chr11:60230536 chr11:60230539 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_93520 0 0 0 0 2 MS4A1 chr11:60230594 5'GT 60230594 Upstream 56bp
chr17 40843901 40843901 1 + G A LUSC 40843898 + 40843878 40843918 41 CAATCCGTGCCAACCACAGCCTGGATGTCTCCTTCTACTTC CAATCCGTGCCAACCACAGCCTGAATGTCTCCTTCTACTTC < 41bp 0.824461522735257 0.618622082335174 0.061418593 0.061287552 prediction 0.411678880800166 Functional Loss - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40843898 chr17:40843901 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_93521 0 0 0 0 1 CNTNAP1 chr17:40843824 3'AG 40843824 Downstream 78bp
chr1 36299646 36299646 1 + G A UCEC 36299643 + 36299623 36299663 41 AGGATGCAGGAATGCCCATCCAGGGTCAGCCATGTTTCTGC AGGATGCAGGAATGCCCATCCAGAGTCAGCCATGTTTCTGC < 41bp 0.799304011047224 0.593465661824813 0.77266574 0.40504575 prediction 0.411676698444822 Functional Loss - AGO4 ENSG00000134698 CDS Human protein_coding chr1:36299643 chr1:36299646 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_93522 0 0 1 0 1 AGO4 chr1:36299591 3'AG 36299591 Downstream 56bp
chr1 55166018 55166018 1 + C T UCEC 55166015 + 55165995 55166035 41 TCCTCCAGATGGAGCAGGTGCGCCGGATCCCCGAGGAATAC TCCTCCAGATGGAGCAGGTGCGCTGGATCCCCGAGGAATAC < 41bp 0.731157874146585 0.525321915715608 0.3857922 0.22752139 prediction 0.411671916861955 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55166015 chr1:55166018 nonsynonymous SNV 0.832 3 24 hm5C_associated_SNPs_93523 0 0 0 0 2 MROH7 chr1:55165994 3'AG 55165994 Downstream 25bp
chr1 55166018 55166018 1 + C T UCEC 55166015 + 55165995 55166035 41 TCCTCCAGATGGAGCAGGTGCGCCGGATCCCCGAGGAATAC TCCTCCAGATGGAGCAGGTGCGCTGGATCCCCGAGGAATAC < 41bp 0.731157874146585 0.525321915715608 0.3857922 0.22752139 prediction 0.411671916861955 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55166015 chr1:55166018 nonsynonymous SNV 0.832 3 24 hm5C_associated_SNPs_93523 0 0 0 0 2 MROH7 chr1:55166003 3'AG 55166003 Downstream 16bp
chr19 50303369 50303369 1 + G A BRCA 50303366 + 50303346 50303386 41 TGCTACAGATCGTCACCAACCGTGATGACGTCCAGGGCTAT TGCTACAGATCGTCACCAACCGTAATGACGTCCAGGGCTAT < 41bp 0.705835836902313 0.466962588778871 0.28860658 0.16837347 prediction 0.411671673804626 Functional Loss - AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50303366 chr19:50303369 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_93524 0 0 0 0 2 AP2A1 chr19:50303354 3'AG 50303354 Downstream 16bp
chr19 50303369 50303369 1 + G A BRCA 50303366 + 50303346 50303386 41 TGCTACAGATCGTCACCAACCGTGATGACGTCCAGGGCTAT TGCTACAGATCGTCACCAACCGTAATGACGTCCAGGGCTAT < 41bp 0.705835836902313 0.466962588778871 0.28860658 0.16837347 prediction 0.411671673804626 Functional Loss - AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50303366 chr19:50303369 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_93524 0 0 0 0 2 AP2A1 chr19:50303407 5'GT 50303407 Upstream 39bp
chr22 49042485 49042485 1 + G T LUAD 49042481 + 49042461 49042501 41 CCAGCCTCGGAGGACGATCGCCCGGCAGACCGCCCGCTGTG CCAGCCTCGGAGGACGATCGCCCGTCAGACCGCCCGCTGTG < 41bp 0.711052089599323 0.505221161929583 0.5924946 0.17685553 prediction 0.411661855339479 Functional Loss - FAM19A5 ENSG00000219438 CDS Human protein_coding chr22:49042481 chr22:49042485 synonymous SNV . 0 25 hm5C_associated_SNPs_93529 0 0 0 0 2 FAM19A5 chr22:49042409 3'AG 49042409 Downstream 77bp
chr22 49042485 49042485 1 + G T LUAD 49042481 + 49042461 49042501 41 CCAGCCTCGGAGGACGATCGCCCGGCAGACCGCCCGCTGTG CCAGCCTCGGAGGACGATCGCCCGTCAGACCGCCCGCTGTG < 41bp 0.711052089599323 0.505221161929583 0.5924946 0.17685553 prediction 0.411661855339479 Functional Loss - FAM19A5 ENSG00000219438 CDS Human protein_coding chr22:49042481 chr22:49042485 synonymous SNV . 0 25 hm5C_associated_SNPs_93529 0 0 0 0 2 FAM19A5 chr22:49042558 5'GT 49042558 Upstream 74bp
chr3 50231195 50231195 1 + C T BLCA 50231192 + 50231172 50231212 41 CGGGTCTCGCGCAGCTACCTCTCCGACCTGGAGCGCCTGGT CGGGTCTCGCGCAGCTACCTCTCTGACCTGGAGCGCCTGGT < 41bp 0.705830389846924 0.485000500573161 0.5871173 0.28117543 prediction 0.411660779693848 Functional Loss - GNAT1 ENSG00000114349 CDS Human protein_coding chr3:50231192 chr3:50231195 synonymous SNV . 0 24 hm5C_associated_SNPs_93530 0 0 0 0 1 GNAT1 chr3:50231186 3'AG 50231186 Downstream 10bp
chr3 186572046 186572046 1 + A C UCEC 186572042 + 186572022 186572062 41 TGAAGGTCCCCGAGGCTTTCCGGGAATCCAAGGCAGGAAAG TGAAGGTCCCCGAGGCTTTCCGGGCATCCAAGGCAGGAAAG < 41bp 0.927999329189291 0.72217230620617 0.9225892 0.9162723 prediction 0.411654045966242 Functional Loss - ADIPOQ ENSG00000181092 CDS Human protein_coding chr3:186572042 chr3:186572046 synonymous SNV . 0 25 hm5C_associated_SNPs_93533 0 0 0 0 1 ADIPOQ chr3:186571973 3'AG 186571973 Downstream 74bp
chr12 32369234 32369234 1 + T C rs201523719 32369233 + 32369213 32369253 41 GGTTGCTGAAGATGGAGAGACTCGGGAGGAAACGCTTCTGC GGTTGCTGAAGATGGAGAGACCCGGGAGGAAACGCTTCTGC < 41bp 0.835853247754068 0.630036740922013 0.46466267 0.544206 prediction 0.411633013664111 Functional Loss - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32369233 chr12:32369234 synonymous SNV . 0 22 hm5C_associated_SNPs_93536 0 0 1 0 1 BICD1 chr12:32369181 3'AG 32369181 Downstream 54bp
chr16 23768908 23768908 1 + C T rs16972893 23768905 + 23768885 23768925 41 GCATCCGGATCCTGAAGTGACTCCGTTTGTGCCTTGGGCTT GCATCCGGATCCTGAAGTGACTCTGTTTGTGCCTTGGGCTT < 41bp 0.705816215994229 0.499792100781596 0.2137593 0.06122145 prediction 0.411632431988457 Functional Loss - CHP2 ENSG00000166869 UTR3 Human protein_coding chr16:23768905 chr16:23768908 . . 0 24 hm5C_associated_SNPs_93537 0 0 0 2 1 CHP2 chr16:23768851 3'AG 23768851 Downstream 58bp
chr16 90161144 90161144 1 + G T UCEC 90161142 + 90161122 90161162 41 TCCTGTGGGAACTGTGGCGCCAGGGCCCCTGAACACCCTCC TCCTGTGGGAACTGTGGCGCCATGGCCCCTGAACACCCTCC < 41bp 0.705815109184853 0.357590507242822 0.81951845 0.29703784 prediction 0.411630218369706 Functional Loss - PRDM7;FAM157B ENSG00000261812 intronic Human transcribed_unprocessed_pseudogene chr16:90161142 chr16:90161144 . . 0 23 hm5C_associated_SNPs_93538 0 0 0 0 1 PRDM7;FAM157B chr16:90161237 5'GT 90161237 Upstream 94bp
chr1 179521770 179521770 1 + C T SKCM 179521768 + 179521748 179521788 41 GCTTGTCTTTGCGCTTCAGCCTCCACAGCCAGTGAGTGCTG GCTTGTCTTTGCGCTTCAGCCTTCACAGCCAGTGAGTGCTG < 41bp 0.70581476699923 0.42747076940163 0.9548353 0.12455851 prediction 0.411629533998461 Functional Loss - NPHS2 ENSG00000116218 CDS Human other chr1:179521768 chr1:179521770 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_93540 0 0 0 1 1 AXDND1;NPHS2 chr1:179521836 5'GT 179521836 Upstream 67bp
chr1 1386072 1386072 1 + G T UCEC 1386068 + 1386048 1386088 41 CCTGCATCTGCAGGCCATGTCAAAGGACGCCCTGAATCTGG CCTGCATCTGCAGGCCATGTCAAATGACGCCCTGAATCTGG < 41bp 0.712156678681368 0.506343115657268 0.50877184 0.3311752 prediction 0.4116271260482 Functional Loss - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1386068 chr1:1386072 nonsynonymous SNV 0.025 4 25 hm5C_associated_SNPs_93541 0 0 0 0 1 ATAD3C chr1:1386138 5'GT 1386138 Upstream 67bp
chr2 233410307 233410307 1 + G A SARC 233410304 + 233410284 233410324 41 TGCTGGACCGCGTCTGCTTCCTGGCCATGCTCTCGCTCTTC TGCTGGACCGCGTCTGCTTCCTGACCATGCTCTCGCTCTTC < 41bp 0.705813353192414 0.454097779116573 0.120492816 0.04267299 prediction 0.411626706384829 Functional Loss - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233410304 chr2:233410307 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_93542 0 0 0 0 1 CHRNG chr2:233410253 3'AG 233410253 Downstream 55bp
chr4 100443782 100443782 1 + T C rs13119384 100443781 + 100443761 100443801 41 TTTGCCAATTGCAGTTACCCCTCCAGCACTGCAGTCCAGGA TTTGCCAATTGCAGTTACCCCCCCAGCACTGCAGTCCAGGA < 41bp 0.837671170014468 0.631859871666342 0.95182097 0.08402163 prediction 0.411622596696252 Functional Loss - C4orf17 ENSG00000138813 CDS Human protein_coding chr4:100443781 chr4:100443782 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_93545 0 0 0 0 1 C4orf17 chr4:100443866 5'GT 100443866 Upstream 85bp
chr1 21799981 21799981 1 + G A LUSC 21799978 + 21799958 21799998 41 TGTGAGTCCAACCAGCCTTACGGGAACACCAGAATCACATT TGTGAGTCCAACCAGCCTTACGGAAACACCAGAATCACATT < 41bp 0.82658032687797 0.620770783956752 0.3959028 0.22224614 prediction 0.411619085842435 Functional Loss - NBPF3 ENSG00000142794 CDS Human protein_coding chr1:21799978 chr1:21799981 synonymous SNV . 0 24 hm5C_associated_SNPs_93548 0 0 0 0 1 NBPF3 chr1:21800078 5'GT 21800078 Upstream 98bp
chr1 16374534 16374534 1 + A C LIHC 16374530 + 16374510 16374550 41 TGTGGCAGCACCCTCTTCCTCGGGAAAGTGGTATGGGCAGG TGTGGCAGCACCCTCTTCCTCGGGCAAGTGGTATGGGCAGG < 41bp 0.939493323158844 0.733684340816539 0.9138686 0.90990525 prediction 0.411617964684612 Functional Loss - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16374530 chr1:16374534 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_93549 0 0 0 0 1 CLCNKB chr1:16374539 5'GT 16374539 Upstream 6bp
chr3 183951521 183951521 1 + G T BRCA 183951519 + 183951499 183951539 41 GACTGGGCCATGCCTGCTTGCAGGTGGGTGCATCTGGCTGG GACTGGGCCATGCCTGCTTGCATGTGGGTGCATCTGGCTGG < 41bp 0.705806176898722 0.342070592585408 0.9220443 0.49866676 prediction 0.411612353797445 Functional Loss - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183951519 chr3:183951521 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_93552 0 0 0 0 1 VWA5B2 chr3:183951521 5'GT 183951521 Upstream 1bp
chr7 98951655 98951655 1 + C T rs73710441 98951652 + 98951632 98951672 41 AGTGGCACTGGTGGCTGGGTCCACGGGGTAAGCTTCTCTGC AGTGGCACTGGTGGCTGGGTCCATGGGGTAAGCTTCTCTGC < 41bp 0.711899816366368 0.506094788688104 0.45649338 0.57869387 prediction 0.411610055356527 Functional Loss - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98951652 chr7:98951655 synonymous SNV . 0 24 hm5C_associated_SNPs_93553 0 0 1 0 1 ARPC1A chr7:98951744 5'GT 98951744 Upstream 90bp
chr14 35465963 35465963 1 + G A rs17849754 35465960 + 35465940 35465980 41 AAAATAACATCAGCATTACGCTCGTTGAGCAATGCCACCAT AAAATAACATCAGCATTACGCTCATTGAGCAATGCCACCAT < 41bp 0.705804836561047 0.477115071011905 0.02351579 0.009355396 prediction 0.411609673122094 Functional Loss - SRP54 ENSG00000100883 CDS Human protein_coding chr14:35465960 chr14:35465963 synonymous SNV . 0 24 hm5C_associated_SNPs_93554 0 0 1 0 1 SRP54 chr14:35465993 5'GT 35465993 Upstream 31bp
chr9 119106967 119106967 1 + G A SKCM 119106964 + 119106944 119106984 41 GCTACGTGCTCCAGATACGGCGGGATGATGAGCTGATCAAG GCTACGTGCTCCAGATACGGCGGAATGATGAGCTGATCAAG < 41bp 0.705803734532655 0.459425283763184 0.8874437 0.78085923 prediction 0.411607469065309 Functional Loss - PAPPA ENSG00000182752 CDS Human protein_coding chr9:119106964 chr9:119106967 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_93555 0 0 0 0 1 PAPPA chr9:119106990 5'GT 119106990 Upstream 24bp
chr6 43010843 43010843 1 + G A ESCA 43010840 + 43010820 43010860 41 CCACCACGGCCCGCCAACAGCGCGTCAGGTTTCTCATGATG CCACCACGGCCCGCCAACAGCGCATCAGGTTTCTCATGATG < 41bp 0.705802278438079 0.45697306180995 0.29901162 0.18990946 prediction 0.411604556876158 Functional Loss - CUL7 ENSG00000044090 CDS Human protein_coding chr6:43010840 chr6:43010843 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_93556 0 0 0 0 1 CUL7 chr6:43010796 3'AG 43010796 Downstream 48bp
chr21 35258664 35258664 1 + G T SARC 35258662 + 35258642 35258682 41 CCAAGACGATCCAGGACACTCTGAACCCCAAGTGGAATTCC CCAAGACGATCCAGGACACTCTTAACCCCAAGTGGAATTCC < 41bp 0.70580086560122 0.418372144789283 0.3166796 0.07766226 prediction 0.41160173120244 Functional Loss - ITSN1 ENSG00000205726 CDS Human protein_coding chr21:35258662 chr21:35258664 synonymous SNV . 0 23 hm5C_associated_SNPs_93558 0 0 0 0 1 ITSN1 chr21:35258591 3'AG 35258591 Downstream 74bp
chr19 15640642 15640642 1 + C T SKCM 15640639 + 15640619 15640659 41 GTTCTGGTGCACCCTGATTACATCAAACCCCTTTTGGGAGC GTTCTGGTGCACCCTGATTACATTAAACCCCTTTTGGGAGC < 41bp 0.730238036776614 0.524439589092871 0.56922394 0.60196793 prediction 0.411596895367487 Functional Loss - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15640639 chr19:15640642 synonymous SNV . 0 24 hm5C_associated_SNPs_93560 0 0 0 0 1 CYP4F22 chr19:15640664 5'GT 15640664 Upstream 23bp
chr2 173337571 173337571 1 + G C LUAD 173337570 + 173337550 173337590 41 TTTATAAAACACGGCCTCCCCGGGAGCAGCCTGACACATTC TTTATAAAACACGGCCTCCCCCGGAGCAGCCTGACACATTC < 41bp 0.895450782256684 0.689655686027695 0.6506623 0.62584424 prediction 0.411590192457979 Functional Loss - ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173337570 chr2:173337571 nonsynonymous SNV 0.994 0 22 hm5C_associated_SNPs_93562 0 0 0 0 1 ITGA6 chr2:173337502 3'AG 173337502 Downstream 70bp
chr19 804369 804369 1 + C T UCEC 804367 + 804347 804387 41 CCTCGGTGACCCCTGTGCTGCGCGGCCAGCCCATCTACATC CCTCGGTGACCCCTGTGCTGCGTGGCCAGCCCATCTACATC < 41bp 0.705791918100129 0.428715958006464 0.14980987 0.096490175 prediction 0.411583836200259 Functional Loss - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804367 chr19:804369 synonymous SNV . 0 23 hm5C_associated_SNPs_93563 0 0 1 0 2 PTBP1 chr19:804292 3'AG 804292 Downstream 78bp
chr19 804369 804369 1 + C T UCEC 804367 + 804347 804387 41 CCTCGGTGACCCCTGTGCTGCGCGGCCAGCCCATCTACATC CCTCGGTGACCCCTGTGCTGCGTGGCCAGCCCATCTACATC < 41bp 0.705791918100129 0.428715958006464 0.14980987 0.096490175 prediction 0.411583836200259 Functional Loss - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804367 chr19:804369 synonymous SNV . 0 23 hm5C_associated_SNPs_93563 0 0 1 0 2 PTBP1 chr19:804438 5'GT 804438 Upstream 70bp
chr6 66011513 66011513 1 + C T rs560778968 66011511 + 66011491 66011531 41 ACTTTGGAGCTTGTCTCAAACTCCACATACAGAAAGCCACC ACTTTGGAGCTTGTCTCAAACTTCACATACAGAAAGCCACC < 41bp 0.705789092536173 0.452630618572263 0.90474296 0.13349742 prediction 0.411578185072347 Functional Loss - LOC441155 ENSG00000214558 ncRNA_exonic Human processed_pseudogene chr6:66011511 chr6:66011513 . . 0 23 hm5C_associated_SNPs_93568 0 0 0 0 1 LOC441155 chr6:66011543 5'GT 66011543 Upstream 31bp
chr20 4162551 4162551 1 + C T BLCA 4162548 + 4162528 4162568 41 ACCCGAGAGGAGGTGCGTAACCGCATCAGGAATGACCCTGA ACCCGAGAGGAGGTGCGTAACCGTATCAGGAATGACCCTGA < 41bp 0.75471928852367 0.548931283604476 0.13541836 0.081368506 prediction 0.411576009838386 Functional Loss - SMOX ENSG00000088826 CDS Human protein_coding chr20:4162548 chr20:4162551 synonymous SNV . 0 24 hm5C_associated_SNPs_93570 0 0 0 0 1 SMOX chr20:4162623 5'GT 4162623 Upstream 73bp
chr14 94741817 94741817 1 + G A GBM 94741814 + 94741794 94741834 41 ACAGGTAACTCAGTTGACCCCAAGAGCAGTGGAAGTAAAGA ACAGGTAACTCAGTTGACCCCAAAAGCAGTGGAAGTAAAGA < 41bp 0.705784388697017 0.477274269166619 0.11059922 0.09767726 prediction 0.411568777394034 Functional Loss - PPP4R4 ENSG00000119698 CDS Human protein_coding chr14:94741814 chr14:94741817 synonymous SNV . 0 24 hm5C_associated_SNPs_93573 0 0 0 0 1 PPP4R4 chr14:94741858 5'GT 94741858 Upstream 42bp
chr1 10477061 10477061 1 + C T BRCA 10477059 + 10477039 10477079 41 TGTAGGAGAAGCTGTCTTTGCTCGGTGCTTATCATCTCTGA TGTAGGAGAAGCTGTCTTTGCTTGGTGCTTATCATCTCTGA < 41bp 0.865048243094878 0.659264107619315 0.3303169 0.26304293 prediction 0.411568270951126 Functional Loss - PGD ENSG00000142657 CDS Human protein_coding chr1:10477059 chr1:10477061 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_93574 0 0 1 0 1 PGD chr1:10477044 3'AG 10477044 Downstream 18bp
chr18 43311018 43311018 1 + C T SKCM 43311015 + 43310995 43311035 41 TCCAGTTCATTGACTGGATTCTCCGGGGCATATCCCAAGTG TCCAGTTCATTGACTGGATTCTCTGGGGCATATCCCAAGTG < 41bp 0.70578177534466 0.473905305198548 0.19630674 0.24545908 prediction 0.411563550689321 Functional Loss - SLC14A1 ENSG00000141469 CDS Human protein_coding chr18:43311015 chr18:43311018 nonsynonymous SNV 0.978 4 24 hm5C_associated_SNPs_93578 0 0 0 0 1 SLC14A1 chr18:43310980 3'AG 43310980 Downstream 39bp
chr3 50214234 50214234 1 + G A BLCA 50214231 + 50214211 50214251 41 TCTACCTGGAGCCTGAGCGACTCGAGTCAGGGAAGGGCAAG TCTACCTGGAGCCTGAGCGACTCAAGTCAGGGAAGGGCAAG < 41bp 0.803537728898519 0.597757034768999 0.360657 0.3596189 prediction 0.41156138825904 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50214231 chr3:50214234 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_93579 0 0 0 0 2 SEMA3F chr3:50214201 3'AG 50214201 Downstream 34bp
chr3 50214234 50214234 1 + G A BLCA 50214231 + 50214211 50214251 41 TCTACCTGGAGCCTGAGCGACTCGAGTCAGGGAAGGGCAAG TCTACCTGGAGCCTGAGCGACTCAAGTCAGGGAAGGGCAAG < 41bp 0.803537728898519 0.597757034768999 0.360657 0.3596189 prediction 0.41156138825904 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50214231 chr3:50214234 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_93579 0 0 0 0 2 SEMA3F chr3:50214294 5'GT 50214294 Upstream 61bp
chr7 1027033 1027033 1 + C T UCEC 1027031 + 1027011 1027051 41 GCTGGGCCCTGGGCGGACTCCCCGGCTGGAGGACCAGCAGG GCTGGGCCCTGGGCGGACTCCCTGGCTGGAGGACCAGCAGG < 41bp 0.820537135739516 0.614758891146439 0.6365087 0.24214548 prediction 0.411556489186154 Functional Loss - CYP2W1 ENSG00000073067 CDS Human protein_coding chr7:1027031 chr7:1027033 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_93582 0 0 1 0 1 CYP2W1 chr7:1026983 3'AG 1026983 Downstream 51bp
chr8 11667339 11667339 1 + G A PAAD 11667336 + 11667316 11667356 41 AGAGCAAGGAGAAGGATCGCCAGGTGCTGGAGGACTTCCCA AGAGCAAGGAGAAGGATCGCCAGATGCTGGAGGACTTCCCA < 41bp 0.783054111891437 0.577277510013844 0.9107246 0.91525316 prediction 0.411553203755187 Functional Loss - FDFT1 ENSG00000079459 CDS Human protein_coding chr8:11667336 chr8:11667339 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_93583 0 0 1 0 1 FDFT1 chr8:11667359 5'GT 11667359 Upstream 21bp
chr5 170222365 170222365 1 + G A SKCM 170222362 + 170222342 170222382 41 AGTCCAAGAAGTCCTTCCTCCATGAAGTCACTGTGGGAAAC AGTCCAAGAAGTCCTTCCTCCATAAAGTCACTGTGGGAAAC < 41bp 0.705775358499047 0.470144557139905 0.0063572526 0.004579127 prediction 0.411550716998095 Functional Loss - GABRP ENSG00000094755 CDS Human protein_coding chr5:170222362 chr5:170222365 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_93584 0 0 0 0 1 GABRP chr5:170222429 5'GT 170222429 Upstream 65bp
chr11 1955226 1955226 1 + G T GBM 1955224 + 1955204 1955244 41 CAGAGAAGGAGAGGGAGCGCCAGAACAGACTGGCGGTGAGG CAGAGAAGGAGAGGGAGCGCCATAACAGACTGGCGGTGAGG < 41bp 0.705775215884352 0.360768451823238 0.29315215 0.16481248 prediction 0.411550431768703 Functional Loss - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1955224 chr11:1955226 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_93585 0 0 0 0 2 TNNT3 chr11:1955161 3'AG 1955161 Downstream 66bp
chr11 1955226 1955226 1 + G T GBM 1955224 + 1955204 1955244 41 CAGAGAAGGAGAGGGAGCGCCAGAACAGACTGGCGGTGAGG CAGAGAAGGAGAGGGAGCGCCATAACAGACTGGCGGTGAGG < 41bp 0.705775215884352 0.360768451823238 0.29315215 0.16481248 prediction 0.411550431768703 Functional Loss - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1955224 chr11:1955226 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_93585 0 0 0 0 2 TNNT3 chr11:1955238 5'GT 1955238 Upstream 13bp
chrX 53457866 53457866 1 + T C LIHC 53457865 + 53457845 53457885 41 TCTTTCACAGGCAGGATTACCTGAATTCAGTAATCTACACC TCTTTCACAGGCAGGATTACCCGAATTCAGTAATCTACACC < 41bp 0.770154068577893 0.564380178342242 0.11635843 0.14545462 prediction 0.411547780471304 Functional Loss - RIBC1 ENSG00000158423 CDS Human protein_coding chrX:53457865 chrX:53457866 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_93586 0 0 0 0 1 RIBC1 chrX:53457855 3'AG 53457855 Downstream 12bp
chr2 71190412 71190412 1 + C T STAD 71190410 + 71190390 71190430 41 GGGTCGGGGAGGATCCATCACACAGATCCCCATCCTCACCA GGGTCGGGGAGGATCCATCACATAGATCCCCATCCTCACCA < 41bp 0.847394630133335 0.641622856152163 0.06298596 0.0875586 prediction 0.411543547962345 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71190410 chr2:71190412 stopgain 0.929 1 23 hm5C_associated_SNPs_93589 0 0 0 0 1 ATP6V1B1 chr2:71190442 5'GT 71190442 Upstream 31bp
chr19 3746864 3746864 1 + C T UCEC 3746861 + 3746841 3746881 41 GCAGACGCGGCCCATCTGGACGGCGGAAGATCAGGTACTGC GCAGACGCGGCCCATCTGGACGGTGGAAGATCAGGTACTGC < 41bp 0.71148093825655 0.505711519725097 0.8668534 0.6705142 prediction 0.411538837062907 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3746861 chr19:3746864 nonsynonymous SNV 0.924 3 24 hm5C_associated_SNPs_93590 0 0 0 0 2 TJP3 chr19:3746774 3'AG 3746774 Downstream 91bp
chr19 3746864 3746864 1 + C T UCEC 3746861 + 3746841 3746881 41 GCAGACGCGGCCCATCTGGACGGCGGAAGATCAGGTACTGC GCAGACGCGGCCCATCTGGACGGTGGAAGATCAGGTACTGC < 41bp 0.71148093825655 0.505711519725097 0.8668534 0.6705142 prediction 0.411538837062907 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3746861 chr19:3746864 nonsynonymous SNV 0.924 3 24 hm5C_associated_SNPs_93590 0 0 0 0 2 TJP3 chr19:3746874 5'GT 3746874 Upstream 11bp
chr1 45243397 45243397 1 + C T UCEC 45243394 + 45243374 45243414 41 CATCGTGCTCATCGACAGCACACCGTACCGACAGTGGTACG CATCGTGCTCATCGACAGCACACTGTACCGACAGTGGTACG < 41bp 0.750210750448022 0.544441413852754 0.012247145 0.025789112 prediction 0.411538673190535 Functional Loss - RPS8 ENSG00000142937 CDS Human protein_coding chr1:45243394 chr1:45243397 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_93591 0 0 1 0 1 RPS8 chr1:45243461 5'GT 45243461 Upstream 65bp
chr16 844177 844177 1 + G T THCA 844173 + 844153 844193 41 TGTCCTGCATGCCGCTGCCTCTGCGGGCGAGCACGAGAAGG TGTCCTGCATGCCGCTGCCTCTGCTGGCGAGCACGAGAAGG < 41bp 0.705768574422293 0.48904194760023 0.6040472 0.19507125 prediction 0.411537148844585 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:844173 chr16:844177 synonymous SNV . 0 25 hm5C_associated_SNPs_93592 0 0 1 0 1 CHTF18 chr16:844201 5'GT 844201 Upstream 25bp
chr11 118963883 118963883 1 + G A LGG 118963880 + 118963860 118963900 41 TCACTGCTCGTAACATTCCACGAGGGCCCCAGTTGGCTGCC TCACTGCTCGTAACATTCCACGAAGGCCCCAGTTGGCTGCC < 41bp 0.822329206612526 0.616560714885252 0.85914385 0.37565434 prediction 0.411536983454547 Functional Loss - HMBS ENSG00000256269 CDS Human protein_coding chr11:118963880 chr11:118963883 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_93593 0 0 1 0 1 HMBS chr11:118963820 3'AG 118963820 Downstream 64bp
chr17 7158025 7158025 1 + C T UCEC 7158022 + 7158002 7158042 41 AGGACAGATCCTGTTCCTGTCACCATTGCTCTCGATTCACT AGGACAGATCCTGTTCCTGTCACTATTGCTCTCGATTCACT < 41bp 0.781519502190619 0.575754117460881 0.2930243 0.21757469 prediction 0.411530769459475 Functional Loss - ELP5 ENSG00000170291 CDS Human protein_coding chr17:7158022 chr17:7158025 synonymous SNV . 0 24 hm5C_associated_SNPs_93594 0 0 1 0 1 ELP5 chr17:7158122 5'GT 7158122 Upstream 98bp
chrX 7811292 7811292 1 + G T UCEC 7811288 + 7811268 7811308 41 GGGACCTCCGGCCAAGGCCACGGAGGCAGGAAAGAGGAAGT GGGACCTCCGGCCAAGGCCACGGATGCAGGAAAGAGGAAGT < 41bp 0.710678286036022 0.504914653787351 0.8620833 0.801137 prediction 0.411527264497343 Functional Loss - VCX ENSG00000182583 CDS Human protein_coding chrX:7811288 chrX:7811292 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_93596 0 0 0 0 1 VCX chrX:7811346 5'GT 7811346 Upstream 55bp
chr10 70696828 70696828 1 + C T STAD 70696826 + 70696806 70696846 41 TGGTGCATCAAGCTTTGAACCACGATCTTTGATCACCTCTG TGGTGCATCAAGCTTTGAACCATGATCTTTGATCACCTCTG < 41bp 0.872428406361652 0.666667366940688 0.099699944 0.044891357 prediction 0.411522078841928 Functional Loss - DDX50 ENSG00000107625 CDS Human protein_coding chr10:70696826 chr10:70696828 stopgain 1.000 1 23 hm5C_associated_SNPs_93599 0 0 1 0 1 DDX50 chr10:70696851 5'GT 70696851 Upstream 24bp
chr3 140851079 140851079 1 + G A rs112993214 140851076 + 140851056 140851096 41 CCAAAGTGCAGTGGCACGATCTCGGCTCACTGCAACCTCCG CCAAAGTGCAGTGGCACGATCTCAGCTCACTGCAACCTCCG < 41bp 0.705760611061107 0.452284943580844 0.788184 0.31936115 prediction 0.411521222122215 Functional Loss - SPSB4 ENSG00000175093 CDS Human protein_coding chr3:140851076 chr3:140851079 unknown . 0 24 hm5C_associated_SNPs_93601 0 0 0 0 2 SPSB4 chr3:140851031 3'AG 140851031 Downstream 49bp
chr3 140851079 140851079 1 + G A rs112993214 140851076 + 140851056 140851096 41 CCAAAGTGCAGTGGCACGATCTCGGCTCACTGCAACCTCCG CCAAAGTGCAGTGGCACGATCTCAGCTCACTGCAACCTCCG < 41bp 0.705760611061107 0.452284943580844 0.788184 0.31936115 prediction 0.411521222122215 Functional Loss - SPSB4 ENSG00000175093 CDS Human protein_coding chr3:140851076 chr3:140851079 unknown . 0 24 hm5C_associated_SNPs_93601 0 0 0 0 2 SPSB4 chr3:140851152 5'GT 140851152 Upstream 74bp
chr14 24773449 24773449 1 + G A SARC 24773446 + 24773426 24773466 41 CCTGACCAGCCCCTCTGTGACGCGCAAGCTGCGCCGCCGTG CCTGACCAGCCCCTCTGTGACGCACAAGCTGCGCCGCCGTG < 41bp 0.705758083298394 0.451201402087671 0.2702772 0.029413342 prediction 0.411516166596788 Functional Loss - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24773446 chr14:24773449 nonsynonymous SNV 0.960 0 24 hm5C_associated_SNPs_93604 0 0 1 0 1 NOP9 chr14:24773483 5'GT 24773483 Upstream 35bp
chr5 140047879 140047879 1 + C T BLCA 140047877 + 140047857 140047897 41 TCTGGTCATCAGGTCACCATCTCAAGGCCTGCCGAGCTGTG TCTGGTCATCAGGTCACCATCTTAAGGCCTGCCGAGCTGTG < 41bp 0.879985670703964 0.674227691153545 0.17526522 0.14330688 prediction 0.411515959100839 Functional Loss - WDR55 ENSG00000120314 CDS Human protein_coding chr5:140047877 chr5:140047879 synonymous SNV . 0 23 hm5C_associated_SNPs_93605 0 0 1 0 1 WDR55 chr5:140047819 3'AG 140047819 Downstream 61bp
chr17 72349067 72349067 1 + C T rs2280108 72349064 + 72349044 72349084 41 GATGCCCAGCACCTGCAGAACAGCGCCCTCCCTCCCCTCAG GATGCCCAGCACCTGCAGAACAGTGCCCTCCCTCCCCTCAG < 41bp 0.715893816187773 0.510138709913154 0.5671888 0.20873979 prediction 0.411510212549239 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72349064 chr17:72349067 synonymous SNV . 0 24 hm5C_associated_SNPs_93609 0 0 0 0 1 KIF19 chr17:72349093 5'GT 72349093 Upstream 27bp
chr17 27069024 27069024 1 + T C rs75850216 27069023 + 27069003 27069043 41 TGAGGCACCCGGATTCACCTCTGGACCACCCTGATATTGCT TGAGGCACCCGGATTCACCTCCGGACCACCCTGATATTGCT < 41bp 0.798141440558882 0.592388233049865 0.18990836 0.18256932 prediction 0.411506415018034 Functional Loss - NEK8 ENSG00000265073 ncRNA_intronic Human protein_coding chr17:27069023 chr17:27069024 . . 0 22 hm5C_associated_SNPs_93610 0 0 1 0 1 NEK8 chr17:27068977 3'AG 27068977 Downstream 48bp
chr3 1371568 1371568 1 + G T UCEC 1371566 + 1371546 1371586 41 TGCAAACCAAATGCTTTTCCCAGGGCAGCTATCTCTTGGAA TGCAAACCAAATGCTTTTCCCATGGCAGCTATCTCTTGGAA < 41bp 0.705750511107252 0.354310829963748 0.917547 0.3419337 prediction 0.411501022214504 Functional Loss - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1371566 chr3:1371568 nonsynonymous SNV 0.984 3 23 hm5C_associated_SNPs_93611 0 0 0 0 2 CNTN6 chr3:1371469 3'AG 1371469 Downstream 100bp
chr3 1371568 1371568 1 + G T UCEC 1371566 + 1371546 1371586 41 TGCAAACCAAATGCTTTTCCCAGGGCAGCTATCTCTTGGAA TGCAAACCAAATGCTTTTCCCATGGCAGCTATCTCTTGGAA < 41bp 0.705750511107252 0.354310829963748 0.917547 0.3419337 prediction 0.411501022214504 Functional Loss - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1371566 chr3:1371568 nonsynonymous SNV 0.984 3 23 hm5C_associated_SNPs_93611 0 0 0 0 2 CNTN6 chr3:1371619 5'GT 1371619 Upstream 52bp
chrX 154444803 154444803 1 + C T UCEC 154444801 + 154444781 154444821 41 TGTGGCAAAGGAGAAATGGCCACAGGGAATGGGCGGCGGCT TGTGGCAAAGGAGAAATGGCCATAGGGAATGGGCGGCGGCT < 41bp 0.802258862515771 0.596512814494294 0.72203064 0.7241673 prediction 0.411492096042954 Functional Loss - VBP1 ENSG00000155959 CDS Human protein_coding chrX:154444801 chrX:154444803 nonsynonymous SNV 0.053 0 23 hm5C_associated_SNPs_93613 0 0 1 0 1 VBP1 chrX:154444852 5'GT 154444852 Upstream 50bp
chr9 6328931 6328931 1 + G A SKCM 6328928 + 6328908 6328948 41 ATCTGCAGGAAGCTTGGAGGCGTGAAGAAGTCGGCCACATT ATCTGCAGGAAGCTTGGAGGCGTAAAGAAGTCGGCCACATT < 41bp 0.705745307249277 0.477668793483298 0.38148162 0.2903787 prediction 0.411490614498554 Functional Loss - TPD52L3 ENSG00000170777 CDS Human protein_coding chr9:6328928 chr9:6328931 synonymous SNV . 0 24 hm5C_associated_SNPs_93614 0 0 0 0 1 TPD52L3 chr9:6328962 5'GT 6328962 Upstream 32bp
chr12 123249868 123249868 1 + G T UCEC 123249865 + 123249845 123249885 41 ATCTAGAAAATTCACCCAAACAAGAAGCTGGAATTAGTGAG ATCTAGAAAATTCACCCAAACAATAAGCTGGAATTAGTGAG < 41bp 0.705743231380691 0.337486727467937 0.33961192 0.13292584 prediction 0.411486462761381 Functional Loss - DENR ENSG00000139726 CDS Human protein_coding chr12:123249865 chr12:123249868 stopgain 1.000 1 24 hm5C_associated_SNPs_93615 0 0 1 0 2 DENR chr12:123249851 3'AG 123249851 Downstream 18bp
chr12 123249868 123249868 1 + G T UCEC 123249865 + 123249845 123249885 41 ATCTAGAAAATTCACCCAAACAAGAAGCTGGAATTAGTGAG ATCTAGAAAATTCACCCAAACAATAAGCTGGAATTAGTGAG < 41bp 0.705743231380691 0.337486727467937 0.33961192 0.13292584 prediction 0.411486462761381 Functional Loss - DENR ENSG00000139726 CDS Human protein_coding chr12:123249865 chr12:123249868 stopgain 1.000 1 24 hm5C_associated_SNPs_93615 0 0 1 0 2 DENR chr12:123249934 5'GT 123249934 Upstream 67bp
chr17 37818521 37818521 1 + G A UCEC 37818518 + 37818498 37818538 41 CCATAGGGGAGAGAATGGCCCTGGGGGCTTCATCGTGCTCA CCATAGGGGAGAGAATGGCCCTGAGGGCTTCATCGTGCTCA < 41bp 0.82195504465856 0.616212739569305 0.8714094 0.30079967 prediction 0.41148461017851 Functional Loss - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37818518 chr17:37818521 nonsynonymous SNV 0.975 4 24 hm5C_associated_SNPs_93616 0 0 1 0 2 STARD3 chr17:37818504 3'AG 37818504 Downstream 18bp
chr17 37818521 37818521 1 + G A UCEC 37818518 + 37818498 37818538 41 CCATAGGGGAGAGAATGGCCCTGGGGGCTTCATCGTGCTCA CCATAGGGGAGAGAATGGCCCTGAGGGCTTCATCGTGCTCA < 41bp 0.82195504465856 0.616212739569305 0.8714094 0.30079967 prediction 0.41148461017851 Functional Loss - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37818518 chr17:37818521 nonsynonymous SNV 0.975 4 24 hm5C_associated_SNPs_93616 0 0 1 0 2 STARD3 chr17:37818597 5'GT 37818597 Upstream 77bp
chr1 156348148 156348148 1 + C T rs190623502 156348145 + 156348125 156348165 41 CCCAGCTGGAGAAGAGCAAGCACCGCCAGGGCTCCGTCTAC CCCAGCTGGAGAAGAGCAAGCACTGCCAGGGCTCCGTCTAC < 41bp 0.713170457271094 0.507431089345785 0.027869552 0.18868011 prediction 0.411478735850618 Functional Loss - RHBG ENSG00000132677 CDS Human protein_coding chr1:156348145 chr1:156348148 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_93617 0 0 1 1 2 RHBG chr1:156348190 5'GT 156348190 Upstream 43bp
chr1 156348148 156348148 1 + C T rs190623502 156348145 + 156348125 156348165 41 CCCAGCTGGAGAAGAGCAAGCACCGCCAGGGCTCCGTCTAC CCCAGCTGGAGAAGAGCAAGCACTGCCAGGGCTCCGTCTAC < 41bp 0.713170457271094 0.507431089345785 0.027869552 0.18868011 prediction 0.411478735850618 Functional Loss - RHBG ENSG00000132677 CDS Human protein_coding chr1:156348145 chr1:156348148 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_93617 0 0 1 1 2 RHBG chr1:156348204 5'GT 156348204 Upstream 57bp
chr21 41151172 41151172 1 + C T LUAD 41151169 + 41151149 41151189 41 CAATACGCTGCTGCTGCTGCCGCCGTCGTTGTTGTGGCTGC CAATACGCTGCTGCTGCTGCCGCTGTCGTTGTTGTGGCTGC < 41bp 0.767755771830333 0.562019060090246 0.36994123 0.2534269 prediction 0.411473423480174 Functional Loss - IGSF5 ENSG00000183067 CDS Human protein_coding chr21:41151169 chr21:41151172 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_93618 0 0 0 0 1 IGSF5 chr21:41151232 5'GT 41151232 Upstream 61bp
chr8 145235110 145235110 1 + G T LUSC 145235106 + 145235086 145235126 41 GGTCTGGGACTGGCAGCAGGCGGCGAGTGGCGTCCTGGTGG GGTCTGGGACTGGCAGCAGGCGGCTAGTGGCGTCCTGGTGG < 41bp 0.74253465412016 0.536800241202811 0.88262457 0.46301126 prediction 0.411468825834697 Functional Loss - MROH1 ENSG00000179832 CDS Human protein_coding chr8:145235106 chr8:145235110 synonymous SNV . 0 25 hm5C_associated_SNPs_93621 0 0 1 0 1 MROH1 chr8:145235081 3'AG 145235081 Downstream 30bp
chr11 119058009 119058009 1 + C T CESC 119058007 + 119057987 119058027 41 CCGCATCCGGGCCAGCAGCCCTCGGGTGTTGCTGACAGTAT CCGCATCCGGGCCAGCAGCCCTTGGGTGTTGCTGACAGTAT < 41bp 0.847052118451277 0.641318217974564 0.087498516 0.077705264 prediction 0.411467800953425 Functional Loss - PDZD3 ENSG00000172367 CDS Human protein_coding chr11:119058007 chr11:119058009 nonsynonymous SNV 0.874 4 23 hm5C_associated_SNPs_93622 0 0 0 0 1 PDZD3 chr11:119057979 3'AG 119057979 Downstream 31bp
chr10 70514543 70514543 1 + G A SKCM 70514540 + 70514520 70514560 41 GTGCTCTTGCTGAGGACCCACAAGAACTTCGAGATGGATTC GTGCTCTTGCTGAGGACCCACAAAAACTTCGAGATGGATTC < 41bp 0.705732900614723 0.487667514943031 0.07650229 0.09238756 prediction 0.411465801229445 Functional Loss - CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70514540 chr10:70514543 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_93623 0 0 1 0 2 CCAR1 chr10:70514471 3'AG 70514471 Downstream 73bp
chr10 70514543 70514543 1 + G A SKCM 70514540 + 70514520 70514560 41 GTGCTCTTGCTGAGGACCCACAAGAACTTCGAGATGGATTC GTGCTCTTGCTGAGGACCCACAAAAACTTCGAGATGGATTC < 41bp 0.705732900614723 0.487667514943031 0.07650229 0.09238756 prediction 0.411465801229445 Functional Loss - CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70514540 chr10:70514543 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_93623 0 0 1 0 2 CCAR1 chr10:70514584 5'GT 70514584 Upstream 42bp
chr20 9498741 9498741 1 + G A SKCM 9498738 + 9498718 9498758 41 CTCTGCCTTGGTCACCCCCGCTGGGAAGTCCTATGAGTGTC CTCTGCCTTGGTCACCCCCGCTGAGAAGTCCTATGAGTGTC < 41bp 0.828211342454871 0.622481319993211 0.17536613 0.11188316 prediction 0.411460044923321 Functional Loss - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9498738 chr20:9498741 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_93627 0 0 0 0 1 LAMP5 chr20:9498687 3'AG 9498687 Downstream 55bp
chr2 209212639 209212639 1 + G A UCEC 209212636 + 209212616 209212656 41 GAGGGACAGCAGGGAAAAGCCCCGATCTCTCTTCCCAGAAG GAGGGACAGCAGGGAAAAGCCCCAATCTCTCTTCCCAGAAG < 41bp 0.705727451811704 0.483482674399417 0.6025109 0.34684294 prediction 0.411454903623408 Functional Loss - PIKFYVE ENSG00000115020 CDS Human protein_coding chr2:209212636 chr2:209212639 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_93628 0 0 1 0 1 PIKFYVE chr2:209212583 3'AG 209212583 Downstream 57bp
chr1 12779666 12779666 1 + G A UCEC 12779663 + 12779643 12779683 41 AGCCTGGCATCGTGTACTACCACGGTGGCGGGGGCGTCATG AGCCTGGCATCGTGTACTACCACAGTGGCGGGGGCGTCATG < 41bp 0.828000549058154 0.622283133862072 0.33968857 0.21002796 prediction 0.411434830392165 Functional Loss - AADACL3 ENSG00000188984 CDS Human protein_coding chr1:12779663 chr1:12779666 nonsynonymous SNV 0.004 3 24 hm5C_associated_SNPs_93633 0 0 0 0 1 AADACL3 chr1:12779693 5'GT 12779693 Upstream 28bp
chr20 43940261 43940261 1 + C T LUSC 43940259 + 43940239 43940279 41 CCCCCGCCCTGTGTCTACCTCTCGGGGCCTGGCTGGAGGGT CCCCCGCCCTGTGTCTACCTCTTGGGGCCTGGCTGGAGGGT < 41bp 0.861221669297112 0.655506242147709 0.19512048 0.11150339 prediction 0.411430854298806 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43940259 chr20:43940261 nonsynonymous SNV 0.198 1 23 hm5C_associated_SNPs_93636 0 0 0 0 2 RBPJL chr20:43940229 3'AG 43940229 Downstream 33bp
chr20 43940261 43940261 1 + C T LUSC 43940259 + 43940239 43940279 41 CCCCCGCCCTGTGTCTACCTCTCGGGGCCTGGCTGGAGGGT CCCCCGCCCTGTGTCTACCTCTTGGGGCCTGGCTGGAGGGT < 41bp 0.861221669297112 0.655506242147709 0.19512048 0.11150339 prediction 0.411430854298806 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43940259 chr20:43940261 nonsynonymous SNV 0.198 1 23 hm5C_associated_SNPs_93636 0 0 0 0 2 RBPJL chr20:43940299 5'GT 43940299 Upstream 39bp
chr5 34930003 34930003 1 + G A UCEC 34930000 + 34929980 34930020 41 TCAAGAAGGCCTATCGGAAGCTGGCCCTGAAATGGCACCCG TCAAGAAGGCCTATCGGAAGCTGACCCTGAAATGGCACCCG < 41bp 0.791962626416576 0.586248472555779 0.16804144 0.21063015 prediction 0.411428307721593 Functional Loss - DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34930000 chr5:34930003 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_93638 0 0 1 0 1 DNAJC21 chr5:34930021 5'GT 34930021 Upstream 19bp
chr22 45914606 45914606 1 + C T SKCM 45914603 + 45914583 45914623 41 AGGCCTGCTGTGCGGACGGACACCGGATGGCCACTCATCAG AGGCCTGCTGTGCGGACGGACACTGGATGGCCACTCATCAG < 41bp 0.705708562007309 0.482377227804738 0.21977597 0.14424202 prediction 0.411417124014618 Functional Loss - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45914603 chr22:45914606 nonsynonymous SNV 0.087 2 24 hm5C_associated_SNPs_93641 0 0 1 0 2 FBLN1 chr22:45914562 3'AG 45914562 Downstream 45bp
chr22 45914606 45914606 1 + C T SKCM 45914603 + 45914583 45914623 41 AGGCCTGCTGTGCGGACGGACACCGGATGGCCACTCATCAG AGGCCTGCTGTGCGGACGGACACTGGATGGCCACTCATCAG < 41bp 0.705708562007309 0.482377227804738 0.21977597 0.14424202 prediction 0.411417124014618 Functional Loss - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45914603 chr22:45914606 nonsynonymous SNV 0.087 2 24 hm5C_associated_SNPs_93641 0 0 1 0 2 FBLN1 chr22:45914667 5'GT 45914667 Upstream 62bp
chr11 48145202 48145202 1 + G A UCEC 48145199 + 48145179 48145219 41 TCTGATCTCCGTGTTGCCCTCACGGGTGTGAGGAAGGCTGC TCTGATCTCCGTGTTGCCCTCACAGGTGTGAGGAAGGCTGC < 41bp 0.705707480257811 0.455325111468434 0.72462136 0.15060785 prediction 0.411414960515621 Functional Loss - PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48145199 chr11:48145202 synonymous SNV . 0 24 hm5C_associated_SNPs_93642 0 0 0 0 1 PTPRJ chr11:48145165 3'AG 48145165 Downstream 38bp
chr19 50949163 50949163 1 + G A rs35449474 50949160 + 50949140 50949180 41 GAAAGATGGTGTGGAACTGACTCGGGAGGATTCCTTCAAGG GAAAGATGGTGTGGAACTGACTCAGGAGGATTCCTTCAAGG < 41bp 0.818572145268113 0.612866076618131 0.25226536 0.15351766 prediction 0.411412137299964 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50949160 chr19:50949163 nonsynonymous SNV 0.986 1 24 hm5C_associated_SNPs_93643 0 0 0 0 1 MYBPC2 chr19:50949137 3'AG 50949137 Downstream 27bp
chr17 7907072 7907072 1 + G T LUSC 7907070 + 7907050 7907090 41 GCCCTGAGGAAGGTTCGGGACGGGCCCAGGGTCACAGGTAG GCCCTGAGGAAGGTTCGGGACGTGCCCAGGGTCACAGGTAG < 41bp 0.705704461745144 0.342475645559835 0.8342359 0.51657647 prediction 0.411408923490287 Functional Loss - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7907070 chr17:7907072 nonsynonymous SNV 0.843 2 23 hm5C_associated_SNPs_93645 0 0 0 0 1 GUCY2D chr17:7907086 5'GT 7907086 Upstream 15bp
chr14 24619890 24619890 1 + G T LUAD 24619887 + 24619867 24619907 41 TTCTGCAACTCGAGCCCTGGCTGGGTGTGTGTTATGTGCAA TTCTGCAACTCGAGCCCTGGCTGTGTGTGTGTTATGTGCAA < 41bp 0.705704346276233 0.307196295450656 0.49247998 0.077938855 prediction 0.411408692552467 Functional Loss - RNF31 ENSG00000092098 CDS Human protein_coding chr14:24619887 chr14:24619890 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_93646 0 0 1 0 1 RNF31 chr14:24619807 3'AG 24619807 Downstream 84bp
chr18 47093979 47093979 1 + C T COAD 47093977 + 47093957 47093997 41 GACACAGCATTGCCAGGATGCTCGACTGGCTGCAGGTACTG GACACAGCATTGCCAGGATGCTTGACTGGCTGCAGGTACTG < 41bp 0.878740374313127 0.673038585494885 0.31871858 0.1880731 prediction 0.411403577636484 Functional Loss - LIPG ENSG00000101670 CDS Human protein_coding chr18:47093977 chr18:47093979 synonymous SNV . 0 23 hm5C_associated_SNPs_93651 0 0 0 0 1 LIPG chr18:47093991 5'GT 47093991 Upstream 13bp
chr1 24113776 24113776 1 + C T STAD 24113774 + 24113754 24113794 41 TTTTCTTGCAGCTTCGCCGACACGAGGTGACCATCTGCAAT TTTTCTTGCAGCTTCGCCGACATGAGGTGACCATCTGCAAT < 41bp 0.859370676038037 0.653668982743096 0.18083921 0.3521412 prediction 0.411403386589883 Functional Loss - PITHD1 ENSG00000057757 CDS Human protein_coding chr1:24113774 chr1:24113776 synonymous SNV . 0 23 hm5C_associated_SNPs_93652 0 0 1 0 1 PITHD1 chr1:24113765 3'AG 24113765 Downstream 12bp
chr5 150838460 150838460 1 + G A STAD 150838457 + 150838437 150838477 41 CCTCAACAACCTCTCCTCCCCGGGCTCCTACCAGCGCTTTG CCTCAACAACCTCTCCTCCCCGGACTCCTACCAGCGCTTTG < 41bp 0.705701263526985 0.447520845703022 0.8363911 0.394884 prediction 0.41140252705397 Functional Loss - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150838457 chr5:150838460 nonsynonymous SNV 0.874 0 24 hm5C_associated_SNPs_93653 0 0 1 0 1 SLC36A1 chr5:150838496 5'GT 150838496 Upstream 37bp
chr15 85333993 85333993 1 + C T COAD 85333990 + 85333970 85334010 41 AGTGCAGTTTCTGTGCCCACCAGCGGATTCATGCACACAAG AGTGCAGTTTCTGTGCCCACCAGTGGATTCATGCACACAAG < 41bp 0.744242943177725 0.538542278692598 0.38699335 0.098567754 prediction 0.411401328970254 Functional Loss - ZNF592 ENSG00000166716 CDS Human protein_coding chr15:85333990 chr15:85333993 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_93654 0 0 1 0 1 ZNF592 chr15:85333936 3'AG 85333936 Downstream 58bp
chrX 72667548 72667548 1 + C T UCEC 72667546 + 72667526 72667566 41 CCAGTTCCCCCAGCAGGAGCCGCCACAGCCCCTATGCATGG CCAGTTCCCCCAGCAGGAGCCGTCACAGCCCCTATGCATGG < 41bp 0.83605500821591 0.630354700997431 0.7018589 0.16954365 prediction 0.411400614436959 Functional Loss - CDX4 ENSG00000131264 CDS Human protein_coding chrX:72667546 chrX:72667548 synonymous SNV . 0 23 hm5C_associated_SNPs_93655 0 0 0 0 1 CDX4 chrX:72667591 5'GT 72667591 Upstream 44bp
chr12 109949045 109949045 1 + C T SARC 109949042 + 109949022 109949062 41 AGCGTGCTCTTCCAAGAACTCGACAGGGACAGAAAACGGGC AGCGTGCTCTTCCAAGAACTCGATAGGGACAGAAAACGGGC < 41bp 0.774290414932065 0.568594764741146 0.46560866 0.46392107 prediction 0.411391300381837 Functional Loss - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109949042 chr12:109949045 synonymous SNV . 0 24 hm5C_associated_SNPs_93657 0 0 0 1 2 UBE3B chr12:109949009 3'AG 109949009 Downstream 37bp
chr12 109949045 109949045 1 + C T SARC 109949042 + 109949022 109949062 41 AGCGTGCTCTTCCAAGAACTCGACAGGGACAGAAAACGGGC AGCGTGCTCTTCCAAGAACTCGATAGGGACAGAAAACGGGC < 41bp 0.774290414932065 0.568594764741146 0.46560866 0.46392107 prediction 0.411391300381837 Functional Loss - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109949042 chr12:109949045 synonymous SNV . 0 24 hm5C_associated_SNPs_93657 0 0 0 1 2 UBE3B chr12:109949108 5'GT 109949108 Upstream 64bp
chr3 71803825 71803825 1 - C T SKCM 71803828 - 71803808 71803848 41 GGGCCGCATCTTGCGGCGGTCGTGGATGAAGAAGAGCAGGC GGGCCGCATCTTGCGGCGGTCGTAGATGAAGAAGAGCAGGC < 41bp 0.761752211428218 0.556057318837221 0.9141042 0.78553534 prediction 0.411389785181995 Functional Loss - GPR27 ENSG00000170837 CDS Human protein_coding chr3:71803828 chr3:71803825 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_93658 0 0 0 0 1 GPR27 chr3:71803795 5'GT 71803795 Upstream 31bp
chr1 29185797 29185797 1 + G T LUAD 29185793 + 29185773 29185813 41 GTTGGCGTGCCCATCATGGTCATGGCTGTGACCCGTCCCCG GTTGGCGTGCCCATCATGGTCATGTCTGTGACCCGTCCCCG < 41bp 0.705692874906513 0.491872151409538 0.7810438 0.44749838 prediction 0.411385749813025 Functional Loss - OPRD1 ENSG00000116329 CDS Human protein_coding chr1:29185793 chr1:29185797 nonsynonymous SNV 0.898 1 25 hm5C_associated_SNPs_93659 0 0 0 0 1 OPRD1 chr1:29185815 5'GT 29185815 Upstream 19bp
chr11 35219752 35219752 1 + G A READ 35219749 + 35219729 35219769 41 AGACAGACACCTCAGTTTTTCTGGATCAGGCATTGATGATG AGACAGACACCTCAGTTTTTCTGAATCAGGCATTGATGATG < 41bp 0.77926297846464 0.573573706002467 0.25005132 0.15750295 prediction 0.411378544924347 Functional Loss - CD44 ENSG00000026508 CDS Human protein_coding chr11:35219749 chr11:35219752 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_93661 0 0 1 0 2 CD44 chr11:35219668 3'AG 35219668 Downstream 85bp
chr11 35219752 35219752 1 + G A READ 35219749 + 35219729 35219769 41 AGACAGACACCTCAGTTTTTCTGGATCAGGCATTGATGATG AGACAGACACCTCAGTTTTTCTGAATCAGGCATTGATGATG < 41bp 0.77926297846464 0.573573706002467 0.25005132 0.15750295 prediction 0.411378544924347 Functional Loss - CD44 ENSG00000026508 CDS Human protein_coding chr11:35219749 chr11:35219752 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_93661 0 0 1 0 2 CD44 chr11:35219793 5'GT 35219793 Upstream 42bp
chr8 22106000 22106000 1 + G A COAD 22105997 + 22105977 22106017 41 CAGACTCTCTTTGGCAGTTCCTCGATGACCCCGGCCTGAGG CAGACTCTCTTTGGCAGTTCCTCAATGACCCCGGCCTGAGG < 41bp 0.813485122049553 0.607799583724906 0.90209323 0.9355403 prediction 0.411371076649295 Functional Loss - POLR3D ENSG00000168495 CDS Human protein_coding chr8:22105997 chr8:22106000 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_93664 0 0 1 1 1 POLR3D chr8:22105994 3'AG 22105994 Downstream 7bp
chr1 160147390 160147390 1 + G T COAD 160147386 + 160147366 160147406 41 GTTTTAGGCCTGTTGATCTGCTGGGCATCCGCCTCCACTGG GTTTTAGGCCTGTTGATCTGCTGGTCATCCGCCTCCACTGG < 41bp 0.766991806095183 0.5613075332565 0.18872705 0.03451228 prediction 0.411368545677365 Functional Loss - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160147386 chr1:160147390 nonsynonymous SNV 0.855 5 25 hm5C_associated_SNPs_93665 0 0 0 0 2 ATP1A4 chr1:160147309 3'AG 160147309 Downstream 82bp
chr1 160147390 160147390 1 + G T COAD 160147386 + 160147366 160147406 41 GTTTTAGGCCTGTTGATCTGCTGGGCATCCGCCTCCACTGG GTTTTAGGCCTGTTGATCTGCTGGTCATCCGCCTCCACTGG < 41bp 0.766991806095183 0.5613075332565 0.18872705 0.03451228 prediction 0.411368545677365 Functional Loss - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160147386 chr1:160147390 nonsynonymous SNV 0.855 5 25 hm5C_associated_SNPs_93665 0 0 0 0 2 ATP1A4 chr1:160147454 5'GT 160147454 Upstream 65bp
chr2 95945675 95945675 1 + G T LUAD 95945671 + 95945651 95945691 41 CTGGGCCTCAATCTGGGCATCTGGGGCCTGTCTGCCAGGGA CTGGGCCTCAATCTGGGCATCTGGTGCCTGTCTGCCAGGGA < 41bp 0.705683476217374 0.487261097119098 0.8104354 0.26689172 prediction 0.411366952434748 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95945671 chr2:95945675 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_93666 0 0 0 0 1 PROM2 chr2:95945745 5'GT 95945745 Upstream 71bp
chr2 121736037 121736037 1 + G T SKCM 121736033 + 121736013 121736053 41 ATCAACAACGAGCACATCCACGGGGAGAAGAAGGAGTTTGT ATCAACAACGAGCACATCCACGGGTAGAAGAAGGAGTTTGT < 41bp 0.707533048630685 0.501850111290253 0.8974768 0.68606967 prediction 0.411365874680864 Functional Loss - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121736033 chr2:121736037 stopgain 1.000 1 25 hm5C_associated_SNPs_93667 0 0 0 0 1 GLI2 chr2:121736010 3'AG 121736010 Downstream 28bp
chr6 148861686 148861686 1 + G A UCEC 148861683 + 148861663 148861703 41 GCTACGAAAGCAGTGAGAACCTGGAAAACGGTAATGTCAGC GCTACGAAAGCAGTGAGAACCTGAAAAACGGTAATGTCAGC < 41bp 0.779034856764761 0.573353586588698 0.3225839 0.15967664 prediction 0.411362540352127 Functional Loss - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148861683 chr6:148861686 nonsynonymous SNV 0.980 2 24 hm5C_associated_SNPs_93668 0 0 0 0 1 SASH1 chr6:148861692 5'GT 148861692 Upstream 7bp
chr20 17434458 17434458 1 + C T UCEC 17434455 + 17434435 17434475 41 GGCAGCTATGACGACTGCAACTGCGACGGCTACGCCTCCAG GGCAGCTATGACGACTGCAACTGTGACGGCTACGCCTCCAG < 41bp 0.705678640796718 0.483025175194713 0.3861545 0.2600358 prediction 0.411357281593437 Functional Loss - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17434455 chr20:17434458 synonymous SNV . 0 24 hm5C_associated_SNPs_93670 0 0 0 0 1 PCSK2 chr20:17434387 3'AG 17434387 Downstream 72bp
chr8 9912103 9912103 1 + C T KIRP 9912101 + 9912081 9912121 41 CCCGTCCCGAGGATGGGCAACTCGGCCTCGAACATCGTCAG CCCGTCCCGAGGATGGGCAACTTGGCCTCGAACATCGTCAG < 41bp 0.804642812482694 0.598967008356411 0.38590714 0.33765596 prediction 0.411351608252567 Functional Loss - MSRA ENSG00000175806 CDS Human protein_coding chr8:9912101 chr8:9912103 nonsynonymous SNV 0.124 1 23 hm5C_associated_SNPs_93671 0 0 0 0 1 MSRA chr8:9912168 5'GT 9912168 Upstream 66bp
chrX 48675014 48675014 1 + C T UCEC 48675011 + 48674991 48675031 41 TTGCCACTGGCGCTGCCTGCCGCCTGGTGGAGGCTGTGCTC TTGCCACTGGCGCTGCCTGCCGCTTGGTGGAGGCTGTGCTC < 41bp 0.740268480109589 0.534595289923196 0.58371335 0.39732468 prediction 0.411346380372785 Functional Loss - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48675011 chrX:48675014 synonymous SNV . 0 24 hm5C_associated_SNPs_93673 0 0 1 0 1 HDAC6 chrX:48675040 5'GT 48675040 Upstream 27bp
chr16 20926885 20926885 1 + C T MESO 20926882 + 20926862 20926902 41 TTTGGTGGGTCTGAAGATGACAACGGCAACACGACAAGAAG TTTGGTGGGTCTGAAGATGACAATGGCAACACGACAAGAAG < 41bp 0.705673157640262 0.493642753802855 0.3658734 0.41868943 prediction 0.411346315280523 Functional Loss - LYRM1 ENSG00000102897 CDS Human protein_coding chr16:20926882 chr16:20926885 nonsynonymous SNV 0.815 0 24 hm5C_associated_SNPs_93674 0 0 1 0 1 LYRM1 chr16:20926878 3'AG 20926878 Downstream 8bp
chr2 47083098 47083098 1 + G T UCEC 47083096 + 47083076 47083116 41 CAGCCAATGATGAGCAGCTGCTGGGCTGAAGGGACTGGGGC CAGCCAATGATGAGCAGCTGCTTGGCTGAAGGGACTGGGGC < 41bp 0.705667662077335 0.34806890224072 0.24189061 0.10522494 prediction 0.41133532415467 Functional Loss - LINC01119 ENSG00000239332 CDS Human lincRNA chr2:47083096 chr2:47083098 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_93679 0 0 0 0 2 LINC01119 chr2:47083062 3'AG 47083062 Downstream 37bp
chr2 47083098 47083098 1 + G T UCEC 47083096 + 47083076 47083116 41 CAGCCAATGATGAGCAGCTGCTGGGCTGAAGGGACTGGGGC CAGCCAATGATGAGCAGCTGCTTGGCTGAAGGGACTGGGGC < 41bp 0.705667662077335 0.34806890224072 0.24189061 0.10522494 prediction 0.41133532415467 Functional Loss - LINC01119 ENSG00000239332 CDS Human lincRNA chr2:47083096 chr2:47083098 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_93679 0 0 0 0 2 LINC01119 chr2:47083129 5'GT 47083129 Upstream 32bp
chr22 21141180 21141180 1 + G A SKCM 21141177 + 21141157 21141197 41 AAACAGTTCAAGCACCAAGGCACGATCACAGTGAACGAGGA AAACAGTTCAAGCACCAAGGCACAATCACAGTGAACGAGGA < 41bp 0.784636516686545 0.578971431929278 0.02364391 0.01849261 prediction 0.411330169514534 Functional Loss - SERPIND1 ENSG00000099937 CDS Human protein_coding chr22:21141177 chr22:21141180 synonymous SNV . 0 24 hm5C_associated_SNPs_93682 0 0 1 0 1 SERPIND1 chr22:21141163 3'AG 21141163 Downstream 18bp
chr7 64498882 64498882 1 + G T LUAD 64498879 + 64498859 64498899 41 AGAGGCAGAAGGAGCGGGACCCCGAGCACCGGGCCCTCTGC AGAGGCAGAAGGAGCGGGACCCCTAGCACCGGGCCCTCTGC < 41bp 0.919867278924569 0.714207612982039 0.36357263 0.082060635 prediction 0.41131933188506 Functional Loss - CCT6P3 ENSG00000234585;ENSG00000239985 ncRNA_exonic Human other chr7:64498879 chr7:64498882 . . 0 24 hm5C_associated_SNPs_93685 0 0 1 0 1 CCT6P3 chr7:64498943 5'GT 64498943 Upstream 62bp
chr19 49510303 49510303 1 + G A COAD 49510300 + 49510280 49510320 41 GCGCAGGCCCTGGGCCCTGACACGCCATTCACAGCCATCGC GCGCAGGCCCTGGGCCCTGACACACCATTCACAGCCATCGC < 41bp 0.705658296725151 0.45237675885618 0.112748384 0.023919791 prediction 0.411316593450303 Functional Loss - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49510300 chr19:49510303 synonymous SNV . 0 24 hm5C_associated_SNPs_93687 0 0 1 0 1 RUVBL2 chr19:49510275 3'AG 49510275 Downstream 29bp
chr2 79253898 79253898 1 + G T LUSC 79253894 + 79253874 79253914 41 ATCAGCTGTCCCAAAGGCTCCAAGGCCTATGGCTCCCCCTG ATCAGCTGTCCCAAAGGCTCCAAGTCCTATGGCTCCCCCTG < 41bp 0.758249067646479 0.552591946360853 0.8234447 0.5100993 prediction 0.411314242571252 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79253894 chr2:79253898 nonsynonymous SNV 0.399 2 25 hm5C_associated_SNPs_93688 0 0 0 0 2 REG3G chr2:79253839 3'AG 79253839 Downstream 60bp
chr2 79253898 79253898 1 + G T LUSC 79253894 + 79253874 79253914 41 ATCAGCTGTCCCAAAGGCTCCAAGGCCTATGGCTCCCCCTG ATCAGCTGTCCCAAAGGCTCCAAGTCCTATGGCTCCCCCTG < 41bp 0.758249067646479 0.552591946360853 0.8234447 0.5100993 prediction 0.411314242571252 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79253894 chr2:79253898 nonsynonymous SNV 0.399 2 25 hm5C_associated_SNPs_93688 0 0 0 0 2 REG3G chr2:79253957 5'GT 79253957 Upstream 60bp
chr9 131469624 131469624 1 + G C HNSC 131469621 + 131469601 131469641 41 GCAGAGTGACCCGAGAGTTGCGGGCTGCGGTGCCTGGATAC GCAGAGTGACCCGAGAGTTGCGGCCTGCGGTGCCTGGATAC < 41bp 0.71144349507898 0.505789091330636 0.91596264 0.41772282 prediction 0.411308807496689 Functional Loss - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131469621 chr9:131469624 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_93690 0 0 0 0 1 PKN3 chr9:131469684 5'GT 131469684 Upstream 61bp
chrX 149680352 149680352 1 + G T UCEC 149680350 + 149680330 149680370 41 AGCAAGCACTTGATGCCACCCAGAACTGGGCTTCTTCAGAA AGCAAGCACTTGATGCCACCCATAACTGGGCTTCTTCAGAA < 41bp 0.70565401182047 0.359870044906142 0.23983783 0.035710126 prediction 0.41130802364094 Functional Loss - MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149680350 chrX:149680352 nonsynonymous SNV 0.049 0 23 hm5C_associated_SNPs_93691 0 0 0 0 1 MAMLD1 chrX:149680274 3'AG 149680274 Downstream 79bp
chr5 72383495 72383495 1 + C T UCEC 72383492 + 72383472 72383512 41 ACACTTGCAGTACAATTCCTCAGCGAGGGAAGTACCCTTTC ACACTTGCAGTACAATTCCTCAGTGAGGGAAGTACCCTTTC < 41bp 0.745682671768108 0.540029826092344 0.5182444 0.3259719 prediction 0.411305691351528 Functional Loss - FCHO2 ENSG00000157107 CDS Human protein_coding chr5:72383492 chr5:72383495 synonymous SNV . 0 24 hm5C_associated_SNPs_93692 0 0 0 0 2 FCHO2 chr5:72383416 3'AG 72383416 Downstream 80bp
chr5 72383495 72383495 1 + C T UCEC 72383492 + 72383472 72383512 41 ACACTTGCAGTACAATTCCTCAGCGAGGGAAGTACCCTTTC ACACTTGCAGTACAATTCCTCAGTGAGGGAAGTACCCTTTC < 41bp 0.745682671768108 0.540029826092344 0.5182444 0.3259719 prediction 0.411305691351528 Functional Loss - FCHO2 ENSG00000157107 CDS Human protein_coding chr5:72383492 chr5:72383495 synonymous SNV . 0 24 hm5C_associated_SNPs_93692 0 0 0 0 2 FCHO2 chr5:72383580 5'GT 72383580 Upstream 86bp
chr5 138147917 138147917 1 + G A UCEC 138147914 + 138147894 138147934 41 TGAGGAATGCTGGCAATGAACAAGACTTAGGAATCCAGTAT TGAGGAATGCTGGCAATGAACAAAACTTAGGAATCCAGTAT < 41bp 0.78592189624314 0.580270551218824 0.19199494 0.08147085 prediction 0.411302690048632 Functional Loss - CTNNA1 ENSG00000044115 CDS Human protein_coding chr5:138147914 chr5:138147917 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_93693 0 0 1 0 2 CTNNA1 chr5:138147872 3'AG 138147872 Downstream 46bp
chr5 138147917 138147917 1 + G A UCEC 138147914 + 138147894 138147934 41 TGAGGAATGCTGGCAATGAACAAGACTTAGGAATCCAGTAT TGAGGAATGCTGGCAATGAACAAAACTTAGGAATCCAGTAT < 41bp 0.78592189624314 0.580270551218824 0.19199494 0.08147085 prediction 0.411302690048632 Functional Loss - CTNNA1 ENSG00000044115 CDS Human protein_coding chr5:138147914 chr5:138147917 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_93693 0 0 1 0 2 CTNNA1 chr5:138147991 5'GT 138147991 Upstream 75bp
chr5 175793482 175793482 1 + C T COAD 175793479 + 175793459 175793499 41 GCGCAGGCAAGAGCACGTTCCTGCGCGTGTTGTCGGGGAAG GCGCAGGCAAGAGCACGTTCCTGTGCGTGTTGTCGGGGAAG < 41bp 0.755712051449945 0.550066350771377 0.24022344 0.11268595 prediction 0.411291401357136 Functional Loss - ARL10 ENSG00000175414 CDS Human protein_coding chr5:175793479 chr5:175793482 nonsynonymous SNV 0.884 4 24 hm5C_associated_SNPs_93696 0 0 0 0 1 ARL10 chr5:175793383 3'AG 175793383 Downstream 100bp
chr16 3452318 3452318 1 + G A UCEC 3452315 + 3452295 3452335 41 CCTGCCCCCGGAGATCCAGGCTCGGGTCAGGCATCGATGTC CCTGCCCCCGGAGATCCAGGCTCAGGTCAGGCATCGATGTC < 41bp 0.823044126724547 0.61740091002525 0.33102643 0.2369358 prediction 0.411286433398593 Functional Loss - ZNF174 ENSG00000103343 CDS Human protein_coding chr16:3452315 chr16:3452318 nonsynonymous SNV 0.983 0 24 hm5C_associated_SNPs_93698 0 0 0 0 1 ZNF174 chr16:3452406 5'GT 3452406 Upstream 89bp
chr7 73279413 73279413 1 + C T rs118088869 73279411 + 73279391 73279431 41 GTCAGGGCTGGCCCAGGAGGCCCGGGGGTCCTGTAACTGGC GTCAGGGCTGGCCCAGGAGGCCTGGGGGTCCTGTAACTGGC < 41bp 0.705641795958268 0.453240494452622 0.5821294 0.6365952 prediction 0.411283591916536 Functional Loss - TMEM270 ENSG00000175877 CDS Human protein_coding chr7:73279411 chr7:73279413 nonsynonymous SNV 0.045 0 23 hm5C_associated_SNPs_93699 0 0 0 0 1 TMEM270 chr7:73279323 3'AG 73279323 Downstream 91bp
chr1 1268136 1268136 1 + C T BLCA 1268133 + 1268113 1268153 41 CCCAGGCCCTGCACAACACTCTTCAGTGCAACGCCTCAGGC CCCAGGCCCTGCACAACACTCTTTAGTGCAACGCCTCAGGC < 41bp 0.705640245185554 0.493377119911941 0.22141555 0.16022867 prediction 0.411280490371107 Functional Loss - TAS1R3 ENSG00000169962 CDS Human protein_coding chr1:1268133 chr1:1268136 stopgain 0.005 0 24 hm5C_associated_SNPs_93701 0 0 0 0 1 TAS1R3 chr1:1268186 5'GT 1268186 Upstream 51bp
chr2 190327259 190327259 1 + C T COAD 190327257 + 190327237 190327277 41 AATCTGTACTTGTAGAGTGGCGCGATGCAACAGAGAAGAAT AATCTGTACTTGTAGAGTGGCGTGATGCAACAGAGAAGAAT < 41bp 0.871356796901543 0.665717226271675 0.4411221 0.59191227 prediction 0.411279141259736 Functional Loss - WDR75 ENSG00000115368 CDS Human protein_coding chr2:190327257 chr2:190327259 synonymous SNV . 0 23 hm5C_associated_SNPs_93702 0 0 1 0 1 WDR75 chr2:190327210 3'AG 190327210 Downstream 50bp
chr1 21887702 21887702 1 + C T STAD 21887699 + 21887679 21887719 41 AAGTTCCCCTTCGTGGCCCTCTCCAAGGTGAGCCCCATCCC AAGTTCCCCTTCGTGGCCCTCTCTAAGGTGAGCCCCATCCC < 41bp 0.772731357901811 0.567093258902695 0.9598816 0.926162 prediction 0.411276197998231 Functional Loss - ALPL ENSG00000162551 CDS Human protein_coding chr1:21887699 chr1:21887702 synonymous SNV . 0 24 hm5C_associated_SNPs_93704 0 0 0 0 2 ALPL chr1:21887631 3'AG 21887631 Downstream 72bp
chr1 21887702 21887702 1 + C T STAD 21887699 + 21887679 21887719 41 AAGTTCCCCTTCGTGGCCCTCTCCAAGGTGAGCCCCATCCC AAGTTCCCCTTCGTGGCCCTCTCTAAGGTGAGCCCCATCCC < 41bp 0.772731357901811 0.567093258902695 0.9598816 0.926162 prediction 0.411276197998231 Functional Loss - ALPL ENSG00000162551 CDS Human protein_coding chr1:21887699 chr1:21887702 synonymous SNV . 0 24 hm5C_associated_SNPs_93704 0 0 0 0 2 ALPL chr1:21887705 5'GT 21887705 Upstream 4bp
chr11 57118274 57118274 1 + C T BLCA 57118271 + 57118251 57118291 41 ATTAAGATCGGCTGGGTGTGCGACTTGGACAAGGCCTGGGA ATTAAGATCGGCTGGGTGTGCGATTTGGACAAGGCCTGGGA < 41bp 0.705637931512129 0.492381040653312 0.10264376 0.106754124 prediction 0.411275863024259 Functional Loss - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57118271 chr11:57118274 synonymous SNV . 0 24 hm5C_associated_SNPs_93705 0 0 0 0 2 P2RX3 chr11:57118236 3'AG 57118236 Downstream 39bp
chr11 57118274 57118274 1 + C T BLCA 57118271 + 57118251 57118291 41 ATTAAGATCGGCTGGGTGTGCGACTTGGACAAGGCCTGGGA ATTAAGATCGGCTGGGTGTGCGATTTGGACAAGGCCTGGGA < 41bp 0.705637931512129 0.492381040653312 0.10264376 0.106754124 prediction 0.411275863024259 Functional Loss - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57118271 chr11:57118274 synonymous SNV . 0 24 hm5C_associated_SNPs_93705 0 0 0 0 2 P2RX3 chr11:57118372 5'GT 57118372 Upstream 99bp
chr22 38055298 38055298 1 + A C STAD 38055294 + 38055274 38055314 41 CGTGCGCGCACCTGCGCGACCCCGAGTGCCTACTCGTGGCC CGTGCGCGCACCTGCGCGACCCCGCGTGCCTACTCGTGGCC < 41bp 0.705634268299129 0.303499126276844 0.48906448 0.38509795 prediction 0.411268536598258 Functional Loss - PDXP ENSG00000241360 CDS Human protein_coding chr22:38055294 chr22:38055298 nonsynonymous SNV 0.992 0 25 hm5C_associated_SNPs_93706 0 0 1 0 1 PDXP chr22:38055363 5'GT 38055363 Upstream 66bp
chr4 111470544 111470544 1 + G A SKCM 111470541 + 111470521 111470561 41 TGAAGCCTATTGCAGATTCTCTGGGATGGAATGATGCTGGA TGAAGCCTATTGCAGATTCTCTGAGATGGAATGATGCTGGA < 41bp 0.801864490267586 0.596231376358136 0.8339247 0.3114121 prediction 0.411266227818901 Functional Loss - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111470541 chr4:111470544 nonsynonymous SNV 0.101 1 24 hm5C_associated_SNPs_93707 0 0 0 0 2 ENPEP chr4:111470502 3'AG 111470502 Downstream 43bp
chr4 111470544 111470544 1 + G A SKCM 111470541 + 111470521 111470561 41 TGAAGCCTATTGCAGATTCTCTGGGATGGAATGATGCTGGA TGAAGCCTATTGCAGATTCTCTGAGATGGAATGATGCTGGA < 41bp 0.801864490267586 0.596231376358136 0.8339247 0.3114121 prediction 0.411266227818901 Functional Loss - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111470541 chr4:111470544 nonsynonymous SNV 0.101 1 24 hm5C_associated_SNPs_93707 0 0 0 0 2 ENPEP chr4:111470575 5'GT 111470575 Upstream 32bp
chr1 11579867 11579867 1 + C T SKCM 11579864 + 11579844 11579884 41 ACGGGCAGCCGCGGCCATCTCATCGTGCAGCTGCAGGAGCT ACGGGCAGCCGCGGCCATCTCATTGTGCAGCTGCAGGAGCT < 41bp 0.716409392508985 0.510776813981574 0.52818835 0.30340242 prediction 0.411265157054821 Functional Loss - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11579864 chr1:11579867 synonymous SNV . 0 24 hm5C_associated_SNPs_93708 0 0 0 0 1 DISP3 chr1:11579937 5'GT 11579937 Upstream 71bp
chr6 146480689 146480689 1 + C T LUSC 146480686 + 146480666 146480706 41 ACAGTGCGAGGACTCCTGAGCGCCATGCGGCGCCTTGGCGT ACAGTGCGAGGACTCCTGAGCGCTATGCGGCGCCTTGGCGT < 41bp 0.755167501280303 0.549535124807467 0.21804771 0.18069479 prediction 0.411264752945671 Functional Loss - GRM1 ENSG00000152822 CDS Human protein_coding chr6:146480686 chr6:146480689 synonymous SNV . 0 24 hm5C_associated_SNPs_93709 0 0 0 0 1 GRM1 chr6:146480733 5'GT 146480733 Upstream 45bp
chr1 151372119 151372119 1 + G T UCEC 151372115 + 151372095 151372135 41 TTTGGGCGGGGGGTCCGGCCCCAGGACAGTTTTACCGCATT TTTGGGCGGGGGGTCCGGCCCCAGTACAGTTTTACCGCATT < 41bp 0.746773216401431 0.541140969533868 0.44625401 0.15452728 prediction 0.411264493735124 Functional Loss - PSMB4 ENSG00000159377 CDS Human protein_coding chr1:151372115 chr1:151372119 nonsynonymous SNV 0.913 4 25 hm5C_associated_SNPs_93710 0 0 1 0 1 PSMB4 chr1:151372203 5'GT 151372203 Upstream 85bp
chr1 65138882 65138882 1 + C T CESC 65138880 + 65138860 65138900 41 AGGGGTTATCTGGTGGCGCACCCGACTCTCATCGACCCCAA AGGGGTTATCTGGTGGCGCACCTGACTCTCATCGACCCCAA < 41bp 0.70562939242747 0.405547813339223 0.14384764 0.2996481 prediction 0.41125878485494 Functional Loss - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65138880 chr1:65138882 nonsynonymous SNV 0.384 4 23 hm5C_associated_SNPs_93712 0 0 1 0 2 CACHD1 chr1:65138841 3'AG 65138841 Downstream 42bp
chr1 65138882 65138882 1 + C T CESC 65138880 + 65138860 65138900 41 AGGGGTTATCTGGTGGCGCACCCGACTCTCATCGACCCCAA AGGGGTTATCTGGTGGCGCACCTGACTCTCATCGACCCCAA < 41bp 0.70562939242747 0.405547813339223 0.14384764 0.2996481 prediction 0.41125878485494 Functional Loss - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65138880 chr1:65138882 nonsynonymous SNV 0.384 4 23 hm5C_associated_SNPs_93712 0 0 1 0 2 CACHD1 chr1:65138940 5'GT 65138940 Upstream 59bp
chr1 908644 908644 1 + G A rs537748009 908641 + 908621 908661 41 GCAGTGGCAGCAGCCGGTCACCCGGGAGCAAGGCCCGGGCA GCAGTGGCAGCAGCCGGTCACCCAGGAGCAAGGCCCGGGCA < 41bp 0.824954906510004 0.619326110087672 0.79460794 0.14937478 prediction 0.411257592844664 Functional Loss - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:908641 chr1:908644 nonsynonymous SNV 0.257 0 24 hm5C_associated_SNPs_93714 0 0 0 0 2 PLEKHN1 chr1:908566 3'AG 908566 Downstream 79bp
chr1 908644 908644 1 + G A rs537748009 908641 + 908621 908661 41 GCAGTGGCAGCAGCCGGTCACCCGGGAGCAAGGCCCGGGCA GCAGTGGCAGCAGCCGGTCACCCAGGAGCAAGGCCCGGGCA < 41bp 0.824954906510004 0.619326110087672 0.79460794 0.14937478 prediction 0.411257592844664 Functional Loss - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:908641 chr1:908644 nonsynonymous SNV 0.257 0 24 hm5C_associated_SNPs_93714 0 0 0 0 2 PLEKHN1 chr1:908706 5'GT 908706 Upstream 63bp
chr7 26331628 26331628 1 + G A rs71532932 26331625 + 26331605 26331645 41 CGCCGCCGCCGCTGCCGCCGCGCGCCTTTGAGTCAGCAAAC CGCCGCCGCCGCTGCCGCCGCGCACCTTTGAGTCAGCAAAC < 41bp 0.787143659321785 0.581516324691088 0.21984833 0.11409351 prediction 0.411254669261393 Functional Loss - SNX10 ENSG00000086300 UTR5 Human protein_coding chr7:26331625 chr7:26331628 . . 0 24 hm5C_associated_SNPs_93715 0 0 1 0 1 SNX10 chr7:26331706 5'GT 26331706 Upstream 79bp
chr2 234959646 234959646 1 + C T SKCM 234959643 + 234959623 234959663 41 GTGTACGACTACGATCCATCCTCCTTAAGGGATGCCCTCAG GTGTACGACTACGATCCATCCTCTTTAAGGGATGCCCTCAG < 41bp 0.705625576777014 0.494934062087172 0.0040571094 0.002183944 prediction 0.411251153554028 Functional Loss - SPP2 ENSG00000072080 CDS Human protein_coding chr2:234959643 chr2:234959646 synonymous SNV . 0 24 hm5C_associated_SNPs_93717 0 0 0 0 1 SPP2 chr2:234959615 3'AG 234959615 Downstream 32bp
chr15 63862713 63862713 1 + C T STAD 63862710 + 63862690 63862730 41 TTGGAACTTCAGGGCGGTTTCAACGGTGTTTCCCGCTCAGC TTGGAACTTCAGGGCGGTTTCAATGGTGTTTCCCGCTCAGC < 41bp 0.755329561621196 0.549705743378818 0.9067055 0.85414004 prediction 0.411247636484756 Functional Loss - USP3 ENSG00000140455 CDS Human protein_coding chr15:63862710 chr15:63862713 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_93718 0 0 1 0 2 USP3 chr15:63862632 3'AG 63862632 Downstream 82bp
chr15 63862713 63862713 1 + C T STAD 63862710 + 63862690 63862730 41 TTGGAACTTCAGGGCGGTTTCAACGGTGTTTCCCGCTCAGC TTGGAACTTCAGGGCGGTTTCAATGGTGTTTCCCGCTCAGC < 41bp 0.755329561621196 0.549705743378818 0.9067055 0.85414004 prediction 0.411247636484756 Functional Loss - USP3 ENSG00000140455 CDS Human protein_coding chr15:63862710 chr15:63862713 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_93718 0 0 1 0 2 USP3 chr15:63862778 5'GT 63862778 Upstream 66bp
chr3 45537800 45537800 1 + G A SKCM 45537797 + 45537777 45537817 41 GCAGCCAAGAGAGAGACAGACACGATGGATACCTTTGTTGA GCAGCCAAGAGAGAGACAGACACAATGGATACCTTTGTTGA < 41bp 0.798496097975789 0.592872888753487 0.18859929 0.046633273 prediction 0.411246418444605 Functional Loss - LARS2 ENSG00000011376 CDS Human protein_coding chr3:45537797 chr3:45537800 synonymous SNV . 0 24 hm5C_associated_SNPs_93719 0 0 1 0 2 LARS2 chr3:45537767 3'AG 45537767 Downstream 34bp
chr3 45537800 45537800 1 + G A SKCM 45537797 + 45537777 45537817 41 GCAGCCAAGAGAGAGACAGACACGATGGATACCTTTGTTGA GCAGCCAAGAGAGAGACAGACACAATGGATACCTTTGTTGA < 41bp 0.798496097975789 0.592872888753487 0.18859929 0.046633273 prediction 0.411246418444605 Functional Loss - LARS2 ENSG00000011376 CDS Human protein_coding chr3:45537797 chr3:45537800 synonymous SNV . 0 24 hm5C_associated_SNPs_93719 0 0 1 0 2 LARS2 chr3:45537865 5'GT 45537865 Upstream 66bp
chr4 17598705 17598705 1 + A T LAML 17598703 + 17598683 17598723 41 TGTGAAAATATGCCCAGCGGCAAGGCCAACAAGCCGGGGGA TGTGAAAATATGCCCAGCGGCATGGCCAACAAGCCGGGGGA < 41bp 0.740967582319238 0.53534519104951 0.74111795 0.4274751 prediction 0.411244782539455 Functional Loss - LAP3 ENSG00000002549 CDS Human protein_coding chr4:17598703 chr4:17598705 nonsynonymous SNV 0.975 2 23 hm5C_associated_SNPs_93721 0 0 1 0 2 LAP3 chr4:17598669 3'AG 17598669 Downstream 37bp
chr4 17598705 17598705 1 + A T LAML 17598703 + 17598683 17598723 41 TGTGAAAATATGCCCAGCGGCAAGGCCAACAAGCCGGGGGA TGTGAAAATATGCCCAGCGGCATGGCCAACAAGCCGGGGGA < 41bp 0.740967582319238 0.53534519104951 0.74111795 0.4274751 prediction 0.411244782539455 Functional Loss - LAP3 ENSG00000002549 CDS Human protein_coding chr4:17598703 chr4:17598705 nonsynonymous SNV 0.975 2 23 hm5C_associated_SNPs_93721 0 0 1 0 2 LAP3 chr4:17598757 5'GT 17598757 Upstream 53bp
chr12 111321986 111321986 1 + C T BLCA 111321984 + 111321964 111322004 41 CAAGGAGGAGAAGAATTTTGCTCGGTTCACGTATGTCACGG CAAGGAGGAGAAGAATTTTGCTTGGTTCACGTATGTCACGG < 41bp 0.863737914830013 0.658118356820678 0.29754162 0.23213306 prediction 0.41123911601867 Functional Loss - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111321984 chr12:111321986 nonsynonymous SNV 0.969 2 23 hm5C_associated_SNPs_93722 0 0 0 0 1 CCDC63 chr12:111322054 5'GT 111322054 Upstream 69bp
chr19 50303015 50303015 1 + G A UCEC 50303012 + 50302992 50303032 41 AGACGGCAGACTACGCCATCCGCGAGGAGATCGTGAGTGCT AGACGGCAGACTACGCCATCCGCAAGGAGATCGTGAGTGCT < 41bp 0.816808379009655 0.611191941631792 0.33629638 0.13212836 prediction 0.411232874755727 Functional Loss - AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50303012 chr19:50303015 nonsynonymous SNV 0.548 2 24 hm5C_associated_SNPs_93725 0 0 1 0 1 AP2A1 chr19:50303023 5'GT 50303023 Upstream 9bp
chrX 48123236 48123236 1 + C T STAD 48123233 + 48123213 48123253 41 AAAGATCATGCCCAAGAAGCCAGCAGAGGACGAAAATGATT AAAGATCATGCCCAAGAAGCCAGTAGAGGACGAAAATGATT < 41bp 0.731411578044979 0.525795172006956 0.06325072 0.049880654 prediction 0.411232812076047 Functional Loss - SSX1 ENSG00000126752 CDS Human protein_coding chrX:48123233 chrX:48123236 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_93726 0 0 1 0 1 SSX1 chrX:48123217 3'AG 48123217 Downstream 20bp
chr18 76752151 76752151 1 + G C rs572244272 76752150 + 76752130 76752170 41 GGCGAGGAGACCAGCGTGTGCGAGAAATGCTGCGCCGAGTT GGCGAGGAGACCAGCGTGTGCCAGAAATGCTGCGCCGAGTT < 41bp 0.895716435905532 0.690100919309771 0.85343957 0.72593874 prediction 0.411231033191523 Functional Loss - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76752150 chr18:76752151 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_93727 0 0 0 0 1 SALL3 chr18:76752074 3'AG 76752074 Downstream 78bp
chr4 74351594 74351594 1 + G A SKCM 74351591 + 74351571 74351611 41 TTGTATAGAATAATGTTTTACAGGAAAAAATATGTGCTATG TTGTATAGAATAATGTTTTACAGAAAAAAATATGTGCTATG < 41bp 0.761381968580345 0.555767889922831 0.24986371 0.105344504 prediction 0.411228157315027 Functional Loss - AFM ENSG00000079557 CDS Human protein_coding chr4:74351591 chr4:74351594 nonsynonymous SNV 0.034 2 24 hm5C_associated_SNPs_93729 0 0 0 0 1 AFM chr4:74351579 3'AG 74351579 Downstream 16bp
chr2 233321982 233321982 1 + G A rs149371572 233321979 + 233321959 233321999 41 ACATGCCTGCCTCAGCCCGCCAGGAGGGGTGCCAGGACATC ACATGCCTGCCTCAGCCCGCCAGAAGGGGTGCCAGGACATC < 41bp 0.819927913914807 0.614318646071273 0.8607789 0.8502543 prediction 0.411218535687068 Functional Loss - ALPI ENSG00000163295 CDS Human protein_coding chr2:233321979 chr2:233321982 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_93733 0 0 0 0 1 ALPI chr2:233322032 5'GT 233322032 Upstream 51bp
chr15 41749892 41749892 1 + C T LAML 41749889 + 41749869 41749909 41 GGTGAAGTGTCAGACTCTGACAGCAACAGCTCCTCTTCCAG GGTGAAGTGTCAGACTCTGACAGTAACAGCTCCTCTTCCAG < 41bp 0.76647268517293 0.560866626441723 0.33782816 0.19267651 prediction 0.411212117462414 Functional Loss - RTF1 ENSG00000137815 CDS Human protein_coding chr15:41749889 chr15:41749892 synonymous SNV . 0 24 hm5C_associated_SNPs_93736 0 0 1 0 1 RTF1 chr15:41749870 3'AG 41749870 Downstream 23bp
chr1 2426377 2426377 1 + C T SKCM 2426375 + 2426355 2426395 41 CGCCTCGTCGTGGGAAGCTTCTCCAGGCGCAAGGTCCGGCG CGCCTCGTCGTGGGAAGCTTCTTCAGGCGCAAGGTCCGGCG < 41bp 0.854546353448672 0.648941163184472 0.95831114 0.45927545 prediction 0.4112103805284 Functional Loss - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2426375 chr1:2426377 nonsynonymous SNV 0.986 3 23 hm5C_associated_SNPs_93737 0 0 0 0 2 PLCH2 chr1:2426295 3'AG 2426295 Downstream 83bp
chr1 2426377 2426377 1 + C T SKCM 2426375 + 2426355 2426395 41 CGCCTCGTCGTGGGAAGCTTCTCCAGGCGCAAGGTCCGGCG CGCCTCGTCGTGGGAAGCTTCTTCAGGCGCAAGGTCCGGCG < 41bp 0.854546353448672 0.648941163184472 0.95831114 0.45927545 prediction 0.4112103805284 Functional Loss - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2426375 chr1:2426377 nonsynonymous SNV 0.986 3 23 hm5C_associated_SNPs_93737 0 0 0 0 2 PLCH2 chr1:2426387 5'GT 2426387 Upstream 11bp
chr19 6828883 6828883 1 + T C KIRC 6828882 + 6828862 6828902 41 GACGGGGAACTCAAGATCACCTCGGTGGAACGGCGCTCCAA GACGGGGAACTCAAGATCACCCCGGTGGAACGGCGCTCCAA < 41bp 0.844947420890756 0.639343933605547 0.5039284 0.57606393 prediction 0.411206974570418 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6828882 chr19:6828883 nonsynonymous SNV 0.846 3 22 hm5C_associated_SNPs_93740 0 0 0 0 2 VAV1 chr19:6828826 3'AG 6828826 Downstream 58bp
chr19 6828883 6828883 1 + T C KIRC 6828882 + 6828862 6828902 41 GACGGGGAACTCAAGATCACCTCGGTGGAACGGCGCTCCAA GACGGGGAACTCAAGATCACCCCGGTGGAACGGCGCTCCAA < 41bp 0.844947420890756 0.639343933605547 0.5039284 0.57606393 prediction 0.411206974570418 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6828882 chr19:6828883 nonsynonymous SNV 0.846 3 22 hm5C_associated_SNPs_93740 0 0 0 0 2 VAV1 chr19:6828911 5'GT 6828911 Upstream 29bp
chr14 24868217 24868217 1 + G A rs541667938 24868214 + 24868194 24868234 41 TCCCACCCCTAGCTACAACCCCGGGCAGGAAGAGCTCGTCG TCCCACCCCTAGCTACAACCCCGAGCAGGAAGAGCTCGTCG < 41bp 0.716638901445154 0.511039351379762 0.32378304 0.17275071 prediction 0.411199100130784 Functional Loss - NYNRIN ENSG00000205978 UTR5 Human protein_coding chr14:24868214 chr14:24868217 . . 0 24 hm5C_associated_SNPs_93741 0 0 1 0 1 NYNRIN chr14:24868292 5'GT 24868292 Upstream 76bp
chr3 183516739 183516739 1 + C T SKCM 183516736 + 183516716 183516756 41 TCTGCCTGTAGCTGCCCCAACTCCAGTTGTCCCCAGCTCTG TCTGCCTGTAGCTGCCCCAACTCTAGTTGTCCCCAGCTCTG < 41bp 0.772615415480274 0.567017000631385 0.91349727 0.52114844 prediction 0.411196829697779 Functional Loss - YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183516736 chr3:183516739 nonsynonymous SNV 0.084 1 24 hm5C_associated_SNPs_93744 0 0 1 0 2 YEATS2 chr3:183516679 3'AG 183516679 Downstream 61bp
chr3 183516739 183516739 1 + C T SKCM 183516736 + 183516716 183516756 41 TCTGCCTGTAGCTGCCCCAACTCCAGTTGTCCCCAGCTCTG TCTGCCTGTAGCTGCCCCAACTCTAGTTGTCCCCAGCTCTG < 41bp 0.772615415480274 0.567017000631385 0.91349727 0.52114844 prediction 0.411196829697779 Functional Loss - YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183516736 chr3:183516739 nonsynonymous SNV 0.084 1 24 hm5C_associated_SNPs_93744 0 0 1 0 2 YEATS2 chr3:183516777 5'GT 183516777 Upstream 39bp
chr17 40835923 40835923 1 + G A COAD 40835920 + 40835900 40835940 41 CTACAGTCTCCTTACTGCGCCGAGATTCGCCAGGCTGCACG CTACAGTCTCCTTACTGCGCCGAAATTCGCCAGGCTGCACG < 41bp 0.705596018315882 0.448095069222152 0.59002686 0.1911524 prediction 0.411192036631763 Functional Loss - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40835920 chr17:40835923 nonsynonymous SNV 0.287 2 24 hm5C_associated_SNPs_93748 0 0 1 0 2 CNTNAP1 chr17:40835839 3'AG 40835839 Downstream 85bp
chr17 40835923 40835923 1 + G A COAD 40835920 + 40835900 40835940 41 CTACAGTCTCCTTACTGCGCCGAGATTCGCCAGGCTGCACG CTACAGTCTCCTTACTGCGCCGAAATTCGCCAGGCTGCACG < 41bp 0.705596018315882 0.448095069222152 0.59002686 0.1911524 prediction 0.411192036631763 Functional Loss - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40835920 chr17:40835923 nonsynonymous SNV 0.287 2 24 hm5C_associated_SNPs_93748 0 0 1 0 2 CNTNAP1 chr17:40835940 5'GT 40835940 Upstream 18bp
chr1 161127959 161127959 1 + G A UCEC 161127956 + 161127936 161127976 41 CATTTCAAACCTTTGTGGGCCAGGAATGTGCCCAAATTTGG CATTTCAAACCTTTGTGGGCCAGAAATGTGCCCAAATTTGG < 41bp 0.789636217912913 0.584042613932021 0.22190481 0.13297334 prediction 0.411187207961785 Functional Loss - UFC1 ENSG00000143222 CDS Human protein_coding chr1:161127956 chr1:161127959 synonymous SNV . 0 24 hm5C_associated_SNPs_93749 0 0 1 0 2 UFC1 chr1:161127911 3'AG 161127911 Downstream 49bp
chr1 161127959 161127959 1 + G A UCEC 161127956 + 161127936 161127976 41 CATTTCAAACCTTTGTGGGCCAGGAATGTGCCCAAATTTGG CATTTCAAACCTTTGTGGGCCAGAAATGTGCCCAAATTTGG < 41bp 0.789636217912913 0.584042613932021 0.22190481 0.13297334 prediction 0.411187207961785 Functional Loss - UFC1 ENSG00000143222 CDS Human protein_coding chr1:161127956 chr1:161127959 synonymous SNV . 0 24 hm5C_associated_SNPs_93749 0 0 1 0 2 UFC1 chr1:161128001 5'GT 161128001 Upstream 43bp
chr11 720118 720118 1 + C T SKCM 720115 + 720095 720135 41 GCCATCACGTCTGTGGACGACGCCATCCGGAAGCTGGTGCA GCCATCACGTCTGTGGACGACGCTATCCGGAAGCTGGTGCA < 41bp 0.772537812347669 0.566950845068332 0.37572488 0.10543153 prediction 0.411173934558674 Functional Loss - EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:720115 chr11:720118 synonymous SNV . 0 24 hm5C_associated_SNPs_93753 0 0 1 0 1 EPS8L2 chr11:720062 3'AG 720062 Downstream 57bp
chr5 428114 428114 1 + G T LGG 428110 + 428090 428130 41 AGAGCAGACACCGCAGCCACCGCGGATGCAAAGTGAGTAAG AGAGCAGACACCGCAGCCACCGCGTATGCAAAGTGAGTAAG < 41bp 0.719763635791277 0.514181468408141 0.75153065 0.2066485 prediction 0.411164334766272 Functional Loss - AHRR ENSG00000063438 CDS Human protein_coding chr5:428110 chr5:428114 nonsynonymous SNV 0.023 2 25 hm5C_associated_SNPs_93757 0 0 0 0 1 AHRR chr5:428121 5'GT 428121 Upstream 8bp
chr19 50939886 50939886 1 + G T LUAD 50939882 + 50939862 50939902 41 CCCTGGACCCAGGTGTACACCGTGGAGCTGCACATTGGGAA CCCTGGACCCAGGTGTACACCGTGTAGCTGCACATTGGGAA < 41bp 0.733903169755355 0.528323811384179 0.4822753 0.5697513 prediction 0.411158716742351 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50939882 chr19:50939886 stopgain 0.999 0 25 hm5C_associated_SNPs_93758 0 0 0 0 1 MYBPC2 chr19:50939874 3'AG 50939874 Downstream 13bp
chr16 67571415 67571415 1 + T C rs377346691 67571414 + 67571394 67571434 41 CCCGGAGCCCAGCCGGGCGGCTCGAAGTGGCCAGGGCCGGA CCCGGAGCCCAGCCGGGCGGCCCGAAGTGGCCAGGGCCGGA < 41bp 0.711822469760637 0.506244184243135 0.54729474 0.3650186 prediction 0.411156571035003 Functional Loss - RIPOR1 ENSG00000039523 UTR5 Human protein_coding chr16:67571414 chr16:67571415 . . 0 22 hm5C_associated_SNPs_93761 0 0 0 0 1 RIPOR1 chr16:67571500 5'GT 67571500 Upstream 86bp
chr10 134898389 134898389 1 + G A STAD 134898386 + 134898366 134898406 41 TGAGGAGGAAGGAATCGCACCTGGGGCAGCAACAGCAGCTC TGAGGAGGAAGGAATCGCACCTGAGGCAGCAACAGCAGCTC < 41bp 0.705577288840299 0.465984748460984 0.34941307 0.30719975 prediction 0.411154577680598 Functional Loss - ADGRA1-AS1 ENSG00000197177 CDS Human protein_coding chr10:134898386 chr10:134898389 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_93762 0 0 0 0 1 ADGRA1-AS1 chr10:134898313 3'AG 134898313 Downstream 77bp
chr10 72468418 72468418 1 + C T STAD 72468415 + 72468395 72468435 41 TGGGCGACACAGAGCGGAAGCGGCGGCATGCCAAGCCAGGC TGGGCGACACAGAGCGGAAGCGGTGGCATGCCAAGCCAGGC < 41bp 0.735927755513422 0.530355493760229 0.8340102 0.6114966 prediction 0.411144523506387 Functional Loss - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72468415 chr10:72468418 nonsynonymous SNV 0.954 4 24 hm5C_associated_SNPs_93767 0 0 1 0 1 ADAMTS14 chr10:72468344 3'AG 72468344 Downstream 75bp
chr3 33877750 33877750 1 + A C COAD 33877746 + 33877726 33877766 41 CGGTCAATGTACCCATCAGTCAGAAATTTACTGGTATGTCA CGGTCAATGTACCCATCAGTCAGACATTTACTGGTATGTCA < 41bp 0.705569706413733 0.298691956318083 0.3829841 0.5269565 prediction 0.411139412827466 Functional Loss - PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33877746 chr3:33877750 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_93768 0 0 1 0 1 PDCD6IP chr3:33877758 5'GT 33877758 Upstream 9bp
chr22 33253252 33253252 1 + C T STAD 33253250 + 33253230 33253270 41 CCACAGATGTACCGAGGCTTCACCAAGATGCCCCATGTGCA CCACAGATGTACCGAGGCTTCATCAAGATGCCCCATGTGCA < 41bp 0.705567856498872 0.406150620579797 0.06489673 0.02591744 prediction 0.411135712997745 Functional Loss - TIMP3 ENSG00000100234 CDS Human protein_coding chr22:33253250 chr22:33253252 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_93769 0 0 1 0 2 TIMP3 chr22:33253236 3'AG 33253236 Downstream 17bp
chr22 33253252 33253252 1 + C T STAD 33253250 + 33253230 33253270 41 CCACAGATGTACCGAGGCTTCACCAAGATGCCCCATGTGCA CCACAGATGTACCGAGGCTTCATCAAGATGCCCCATGTGCA < 41bp 0.705567856498872 0.406150620579797 0.06489673 0.02591744 prediction 0.411135712997745 Functional Loss - TIMP3 ENSG00000100234 CDS Human protein_coding chr22:33253250 chr22:33253252 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_93769 0 0 1 0 2 TIMP3 chr22:33253347 5'GT 33253347 Upstream 96bp
chr21 36042977 36042977 1 + G C HNSC 36042973 + 36042953 36042993 41 CGCCGAGGGTAGCGGCGAGGCCGCGCGCGTGAACGGCCGCC CGCCGAGGGTAGCGGCGAGGCCGCCCGCGTGAACGGCCGCC < 41bp 0.705563882649646 0.408000393412272 0.4413704 0.4739022 prediction 0.411127765299292 Functional Loss - CLIC6 ENSG00000159212 CDS Human protein_coding chr21:36042973 chr21:36042977 synonymous SNV . 0 25 hm5C_associated_SNPs_93771 0 0 0 0 1 CLIC6 chr21:36043061 5'GT 36043061 Upstream 85bp
chr5 94731827 94731827 1 + C T SKCM 94731825 + 94731805 94731845 41 TTTGTTTTAGGTAAGATTATCTCCAGCCAAAATGTCAACCA TTTGTTTTAGGTAAGATTATCTTCAGCCAAAATGTCAACCA < 41bp 0.705559890692029 0.413050305653437 0.8874233 0.07337168 prediction 0.411119781384059 Functional Loss - FAM81B ENSG00000153347 CDS Human protein_coding chr5:94731825 chr5:94731827 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_93773 0 0 0 0 2 FAM81B chr5:94731815 3'AG 94731815 Downstream 13bp
chr5 94731827 94731827 1 + C T SKCM 94731825 + 94731805 94731845 41 TTTGTTTTAGGTAAGATTATCTCCAGCCAAAATGTCAACCA TTTGTTTTAGGTAAGATTATCTTCAGCCAAAATGTCAACCA < 41bp 0.705559890692029 0.413050305653437 0.8874233 0.07337168 prediction 0.411119781384059 Functional Loss - FAM81B ENSG00000153347 CDS Human protein_coding chr5:94731825 chr5:94731827 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_93773 0 0 0 0 2 FAM81B chr5:94731879 5'GT 94731879 Upstream 53bp
chr5 149391845 149391845 1 + C T rs138303033 149391843 + 149391823 149391863 41 CAGTGAGAGTAGCTCCTCTGCACCAGCCACACAGTTCATCA CAGTGAGAGTAGCTCCTCTGCATCAGCCACACAGTTCATCA < 41bp 0.705559340961081 0.413452245870572 0.083927095 0.03566885 prediction 0.411118681922163 Functional Loss - HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149391843 chr5:149391845 nonsynonymous SNV 0.965 1 23 hm5C_associated_SNPs_93774 0 0 1 0 2 HMGXB3 chr5:149391818 3'AG 149391818 Downstream 28bp
chr5 149391845 149391845 1 + C T rs138303033 149391843 + 149391823 149391863 41 CAGTGAGAGTAGCTCCTCTGCACCAGCCACACAGTTCATCA CAGTGAGAGTAGCTCCTCTGCATCAGCCACACAGTTCATCA < 41bp 0.705559340961081 0.413452245870572 0.083927095 0.03566885 prediction 0.411118681922163 Functional Loss - HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149391843 chr5:149391845 nonsynonymous SNV 0.965 1 23 hm5C_associated_SNPs_93774 0 0 1 0 2 HMGXB3 chr5:149391916 5'GT 149391916 Upstream 72bp
chr19 41737137 41737137 1 + G A PRAD 41737134 + 41737114 41737154 41 CACCTGGTCTCCCGCCAACCCACGGAGCTGGAGGTGGCTTG CACCTGGTCTCCCGCCAACCCACAGAGCTGGAGGTGGCTTG < 41bp 0.821816520569662 0.616257339098074 0.86632746 0.36428767 prediction 0.411118362943176 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41737134 chr19:41737137 synonymous SNV . 0 24 hm5C_associated_SNPs_93775 0 0 0 0 2 AXL chr19:41737088 3'AG 41737088 Downstream 50bp
chr19 41737137 41737137 1 + G A PRAD 41737134 + 41737114 41737154 41 CACCTGGTCTCCCGCCAACCCACGGAGCTGGAGGTGGCTTG CACCTGGTCTCCCGCCAACCCACAGAGCTGGAGGTGGCTTG < 41bp 0.821816520569662 0.616257339098074 0.86632746 0.36428767 prediction 0.411118362943176 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41737134 chr19:41737137 synonymous SNV . 0 24 hm5C_associated_SNPs_93775 0 0 0 0 2 AXL chr19:41737203 5'GT 41737203 Upstream 67bp
chr14 24030833 24030833 1 - A G LIHC 24030834 - 24030814 24030854 41 ATCCTCTCAGGGCTGCCATCCTGGAAAAAATGCCTCTTGTG ATCCTCTCAGGGCTGCCATCCCGGAAAAAATGCCTCTTGTG < 41bp 0.826667403780155 0.621109598358027 0.6486188 0.6360345 prediction 0.411115610844255 Functional Loss - AP1G2 ENSG00000213983 CDS Human protein_coding chr14:24030834 chr14:24030833 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_93777 0 0 1 0 1 AP1G2 chr14:24030844 3'AG 24030844 Downstream 12bp
chr12 72068117 72068117 1 + G A STAD 72068114 + 72068094 72068134 41 TTTTGACCTAACAGGACAAACTCGACGACTTAAAATGGATG TTTTGACCTAACAGGACAAACTCAACGACTTAAAATGGATG < 41bp 0.748273418673785 0.542717794667794 0.20625749 0.28037846 prediction 0.411111248011983 Functional Loss - THAP2 ENSG00000173451;ENSG00000258064 CDS Human other chr12:72068114 chr12:72068117 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_93780 0 0 1 0 1 THAP2 chr12:72068178 5'GT 72068178 Upstream 62bp
chr1 113057518 113057518 1 + C T UCEC 113057516 + 113057496 113057536 41 GTACATTGGGGCACTGGGGGCACGAGTGATCTGTGACAATA GTACATTGGGGCACTGGGGGCATGAGTGATCTGTGACAATA < 41bp 0.864140939707831 0.658585534193854 0.32248455 0.37362552 prediction 0.411110811027953 Functional Loss - WNT2B ENSG00000134245 CDS Human protein_coding chr1:113057516 chr1:113057518 stopgain 0.997 0 23 hm5C_associated_SNPs_93781 0 0 0 0 1 WNT2B chr1:113057496 3'AG 113057496 Downstream 23bp
chr12 14650665 14650665 1 + C T STAD 14650662 + 14650642 14650682 41 CGTCTGCCCCCAGAAGCTGCCAGCACATCTCTGCCTCAGAA CGTCTGCCCCCAGAAGCTGCCAGTACATCTCTGCCTCAGAA < 41bp 0.72986079873988 0.524306098807737 0.044884503 0.018170685 prediction 0.411109399864287 Functional Loss - ATF7IP ENSG00000171681 CDS Human protein_coding chr12:14650662 chr12:14650665 synonymous SNV . 0 24 hm5C_associated_SNPs_93784 0 0 1 0 1 ATF7IP chr12:14650588 3'AG 14650588 Downstream 78bp
chr1 17265494 17265494 1 + G C rs373471654 17265490 + 17265470 17265510 41 AACGGCAGCCTGCGGGGGCTCTCGGGCCAGCGGACCCCGTC AACGGCAGCCTGCGGGGGCTCTCGCGCCAGCGGACCCCGTC < 41bp 0.873856939604114 0.668303447175327 0.9045018 0.8651286 prediction 0.411106984857575 Functional Loss - CROCC ENSG00000058453 CDS Human protein_coding chr1:17265490 chr1:17265494 nonsynonymous SNV 0.022 3 25 hm5C_associated_SNPs_93786 0 0 0 0 1 CROCC chr1:17265404 3'AG 17265404 Downstream 91bp
chr1 206619469 206619469 1 + C T LUSC 206619466 + 206619446 206619486 41 ATGATGGACCCCTACAACCTCGCCATCTGCTTCGGGCCCTC ATGATGGACCCCTACAACCTCGCTATCTGCTTCGGGCCCTC < 41bp 0.791794627980563 0.586242084657927 0.29100585 0.14843386 prediction 0.411105086645271 Functional Loss - SRGAP2 ENSG00000163486 CDS Human other chr1:206619466 chr1:206619469 synonymous SNV . 0 24 hm5C_associated_SNPs_93788 0 0 1 0 1 SRGAP2 chr1:206619421 3'AG 206619421 Downstream 49bp
chr3 111432878 111432878 1 + C T BRCA 111432876 + 111432856 111432896 41 CACTCTGAGTGAGCGGGCCTCACGGGGCTCCTTCCATGTCT CACTCTGAGTGAGCGGGCCTCATGGGGCTCCTTCCATGTCT < 41bp 0.857589710468996 0.652039405350036 0.9318091 0.8960639 prediction 0.411100610237919 Functional Loss - PLCXD2 ENSG00000240891 CDS Human protein_coding chr3:111432876 chr3:111432878 nonsynonymous SNV 0.036 1 23 hm5C_associated_SNPs_93789 0 0 0 0 1 PLCXD2 chr3:111432975 5'GT 111432975 Upstream 98bp
chr5 150051469 150051469 1 + A C rs373090645 150051468 + 150051448 150051488 41 CAGCCCCAGCGCCCTGGCGCCAGGTGAGTGGCCTCCTCGGG CAGCCCCAGCGCCCTGGCGCCCGGTGAGTGGCCTCCTCGGG < 41bp 0.850433353470864 0.64488397503311 0.9244211 0.77204585 prediction 0.411098756875508 Functional Loss - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150051468 chr5:150051469 synonymous SNV . 0 22 hm5C_associated_SNPs_93791 0 0 0 0 1 MYOZ3 chr5:150051470 5'GT 150051470 Upstream 2bp
chr1 43812583 43812583 1 + G A SKCM 43812580 + 43812560 43812600 41 CTGTTATCAACTCCGATACACAGGAGAAGGCCATCAGGACT CTGTTATCAACTCCGATACACAGAAGAAGGCCATCAGGACT < 41bp 0.817328635408899 0.611779949505659 0.8866834 0.5634611 prediction 0.411097371806479 Functional Loss - MPL ENSG00000117400 CDS Human protein_coding chr1:43812580 chr1:43812583 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_93792 0 0 0 0 1 MPL chr1:43812605 5'GT 43812605 Upstream 23bp
chr14 21499202 21499202 1 + C T UCEC 21499199 + 21499179 21499219 41 ACGCCCGAACCATCACGTTTCAACAGTTCAAAGAGGCAGTG ACGCCCGAACCATCACGTTTCAATAGTTCAAAGAGGCAGTG < 41bp 0.744739975429589 0.539192317117797 0.08070961 0.11782426 prediction 0.411095316623584 Functional Loss - TPPP2 ENSG00000179636 CDS Human protein_coding chr14:21499199 chr14:21499202 stopgain 0.912 1 24 hm5C_associated_SNPs_93794 0 0 0 0 1 TPPP2 chr14:21499171 3'AG 21499171 Downstream 32bp
chr11 121023678 121023678 1 + C T STAD 121023675 + 121023655 121023695 41 GCCATCCGCCTGAAGAGTGACTGCAGCCACTACTGCGTGGA GCCATCCGCCTGAAGAGTGACTGTAGCCACTACTGCGTGGA < 41bp 0.705546950275087 0.488057878425305 0.3165436 0.19689137 prediction 0.411093900550175 Functional Loss - TECTA ENSG00000109927 CDS Human protein_coding chr11:121023675 chr11:121023678 synonymous SNV . 0 24 hm5C_associated_SNPs_93795 0 0 0 0 1 TECTA chr11:121023590 3'AG 121023590 Downstream 89bp
chr7 120382645 120382645 1 + G A SKCM 120382642 + 120382622 120382662 41 ACCACCACCTGCTTCACTGCCTGGAAAAAACCACGGTAAGG ACCACCACCTGCTTCACTGCCTGAAAAAAACCACGGTAAGG < 41bp 0.764369635520893 0.558823667475375 0.29444367 0.13244599 prediction 0.411091936091037 Functional Loss - KCND2 ENSG00000184408 CDS Human protein_coding chr7:120382642 chr7:120382645 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_93797 0 0 0 0 2 KCND2 chr7:120382564 3'AG 120382564 Downstream 82bp
chr7 120382645 120382645 1 + G A SKCM 120382642 + 120382622 120382662 41 ACCACCACCTGCTTCACTGCCTGGAAAAAACCACGGTAAGG ACCACCACCTGCTTCACTGCCTGAAAAAAACCACGGTAAGG < 41bp 0.764369635520893 0.558823667475375 0.29444367 0.13244599 prediction 0.411091936091037 Functional Loss - KCND2 ENSG00000184408 CDS Human protein_coding chr7:120382642 chr7:120382645 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_93797 0 0 0 0 2 KCND2 chr7:120382656 5'GT 120382656 Upstream 12bp
chr1 24776053 24776053 1 + C T SARC 24776051 + 24776031 24776071 41 TGACATTCGCACCCAACAGTCACGAGAAGATGACAGGCGAG TGACATTCGCACCCAACAGTCATGAGAAGATGACAGGCGAG < 41bp 0.871405819680516 0.665861161846007 0.3682694 0.36534202 prediction 0.411089315669017 Functional Loss - NIPAL3 ENSG00000001461 CDS Human protein_coding chr1:24776051 chr1:24776053 synonymous SNV . 0 23 hm5C_associated_SNPs_93798 0 0 0 0 2 NIPAL3 chr1:24775971 3'AG 24775971 Downstream 83bp
chr1 24776053 24776053 1 + C T SARC 24776051 + 24776031 24776071 41 TGACATTCGCACCCAACAGTCACGAGAAGATGACAGGCGAG TGACATTCGCACCCAACAGTCATGAGAAGATGACAGGCGAG < 41bp 0.871405819680516 0.665861161846007 0.3682694 0.36534202 prediction 0.411089315669017 Functional Loss - NIPAL3 ENSG00000001461 CDS Human protein_coding chr1:24776051 chr1:24776053 synonymous SNV . 0 23 hm5C_associated_SNPs_93798 0 0 0 0 2 NIPAL3 chr1:24776116 5'GT 24776116 Upstream 64bp
chr2 242128131 242128131 1 + T C THYM 242128130 + 242128110 242128150 41 CTGCCGAGACCAGGCTCACGCTGAGAGGTGGGCCATGACCT CTGCCGAGACCAGGCTCACGCCGAGAGGTGGGCCATGACCT < 41bp 0.705543917974691 0.487263201594777 0.5194304 0.53719866 prediction 0.411087835949382 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242128130 chr2:242128131 synonymous SNV . 0 22 hm5C_associated_SNPs_93799 0 0 0 0 1 ANO7 chr2:242128181 5'GT 242128181 Upstream 51bp
chr20 44637627 44637627 1 + C T LUAD 44637625 + 44637605 44637645 41 CTGGGCTGCTGCTTTGCTGCCCCCAGACAGCGCCAGTCCAC CTGGGCTGCTGCTTTGCTGCCCTCAGACAGCGCCAGTCCAC < 41bp 0.705540395882532 0.443456741448529 0.04584831 0.057844162 prediction 0.411080791765063 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44637625 chr20:44637627 nonsynonymous SNV 0.220 3 23 hm5C_associated_SNPs_93801 0 0 0 0 1 MMP9 chr20:44637703 5'GT 44637703 Upstream 77bp
chr7 98987567 98987567 1 + C T rs148826187 98987564 + 98987544 98987584 41 ATCAAGAAGCCCATCCGCTCCACCGTCCTCAGCCTGGACTG ATCAAGAAGCCCATCCGCTCCACTGTCCTCAGCCTGGACTG < 41bp 0.758377644142895 0.552838198995186 0.1644958 0.16246092 prediction 0.411078890295418 Functional Loss - ARPC1B ENSG00000130429 CDS Human protein_coding chr7:98987564 chr7:98987567 synonymous SNV . 0 24 hm5C_associated_SNPs_93802 0 0 1 0 2 ARPC1B chr7:98987528 3'AG 98987528 Downstream 40bp
chr7 98987567 98987567 1 + C T rs148826187 98987564 + 98987544 98987584 41 ATCAAGAAGCCCATCCGCTCCACCGTCCTCAGCCTGGACTG ATCAAGAAGCCCATCCGCTCCACTGTCCTCAGCCTGGACTG < 41bp 0.758377644142895 0.552838198995186 0.1644958 0.16246092 prediction 0.411078890295418 Functional Loss - ARPC1B ENSG00000130429 CDS Human protein_coding chr7:98987564 chr7:98987567 synonymous SNV . 0 24 hm5C_associated_SNPs_93802 0 0 1 0 2 ARPC1B chr7:98987635 5'GT 98987635 Upstream 69bp
chr1 151011465 151011465 1 + G A CESC 151011462 + 151011442 151011482 41 GAATTGGAGACACCTTCAGACTCGGAGCAGCTGGACAGTGG GAATTGGAGACACCTTCAGACTCAGAGCAGCTGGACAGTGG < 41bp 0.780879458142862 0.57534328572536 0.105261445 0.13192794 prediction 0.411072344835005 Functional Loss - BNIPL ENSG00000163141 CDS Human protein_coding chr1:151011462 chr1:151011465 synonymous SNV . 0 24 hm5C_associated_SNPs_93804 0 0 0 0 1 BNIPL chr1:151011502 5'GT 151011502 Upstream 38bp
chr5 1033591 1033591 1 + G A rs372206774 1033588 + 1033568 1033608 41 ACCGCGAGGGCCCGCGAGGACCGGGCGGGCAGCGCCTCAAC ACCGCGAGGGCCCGCGAGGACCGAGCGGGCAGCGCCTCAAC < 41bp 0.823517303716316 0.61798116713906 0.8573988 0.38911462 prediction 0.411072273154513 Functional Loss - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1033588 chr5:1033591 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_93805 0 0 0 0 1 NKD2 chr5:1033614 5'GT 1033614 Upstream 24bp
chr16 1391349 1391349 1 + G A STAD 1391346 + 1391326 1391366 41 CCTGCCTGCCTCGGACGCCACGCGGGAGCCCCGTGCACAGA CCTGCCTGCCTCGGACGCCACGCAGGAGCCCCGTGCACAGA < 41bp 0.827952928842611 0.622420780231925 0.21494249 0.033826143 prediction 0.411064297221371 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1391346 chr16:1391349 nonsynonymous SNV 0.015 0 24 hm5C_associated_SNPs_93807 0 0 0 0 1 BAIAP3 chr16:1391295 3'AG 1391295 Downstream 55bp
chr1 3322106 3322106 1 + C T READ 3322104 + 3322084 3322124 41 AGCGGCACATCCGCTCGCAGCACGTGGGCGCTCGGGCCCAC AGCGGCACATCCGCTCGCAGCATGTGGGCGCTCGGGCCCAC < 41bp 0.705525454195658 0.445652379951012 0.4232839 0.5796997 prediction 0.411050908391316 Functional Loss - PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3322104 chr1:3322106 synonymous SNV . 0 23 hm5C_associated_SNPs_93809 0 0 0 0 1 PRDM16 chr1:3322059 3'AG 3322059 Downstream 48bp
chr19 47883157 47883157 1 + T C UCEC 47883156 + 47883136 47883176 41 CGCACCAGGCCCAGCAGCAGCTGGAGGAGGAGGAGGAGGAT CGCACCAGGCCCAGCAGCAGCCGGAGGAGGAGGAGGAGGAT < 41bp 0.826035386702997 0.620511127111403 0.91612273 0.9220959 prediction 0.411048519183189 Functional Loss - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47883156 chr19:47883157 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_93810 0 0 0 0 1 DHX34 chr19:47883242 5'GT 47883242 Upstream 86bp
chr1 160171103 160171103 1 + G A UCEC 160171100 + 160171080 160171120 41 TCTGCTGAGGAGCTGGAGGACTGGCTGGAGGATGTCCTGGA TCTGCTGAGGAGCTGGAGGACTGACTGGAGGATGTCCTGGA < 41bp 0.793853056753327 0.588333894517281 0.7333824 0.5085961 prediction 0.411038324472092 Functional Loss - CASQ1 ENSG00000143318 CDS Human protein_coding chr1:160171100 chr1:160171103 stopgain 1.000 1 24 hm5C_associated_SNPs_93815 0 0 0 0 1 CASQ1 chr1:160171035 3'AG 160171035 Downstream 69bp
chr14 39706255 39706255 1 + G A SKCM 39706252 + 39706232 39706272 41 AGAAAGGGAAGATTTGTGGGCAGGAAGTGTAAGTAACTACT AGAAAGGGAAGATTTGTGGGCAGAAAGTGTAAGTAACTACT < 41bp 0.705516650088103 0.494458444801088 0.2887006 0.117914975 prediction 0.411033300176207 Functional Loss - MIA2 ENSG00000150526;ENSG00000258941 CDS Human other chr14:39706252 chr14:39706255 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_93816 0 0 0 0 1 MIA2 chr14:39706257 5'GT 39706257 Upstream 3bp
chr3 57994544 57994544 1 + G A UCEC 57994541 + 57994521 57994561 41 TCGAGAATGTGTCCGTGGCGCTCGAGTTCCTGGACCGTGAG TCGAGAATGTGTCCGTGGCGCTCAAGTTCCTGGACCGTGAG < 41bp 0.705516282450577 0.475248739626645 0.2074804 0.24385032 prediction 0.411032564901154 Functional Loss - FLNB ENSG00000136068 CDS Human protein_coding chr3:57994541 chr3:57994544 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_93817 0 0 1 0 1 FLNB chr3:57994583 5'GT 57994583 Upstream 40bp
chr3 20164214 20164214 1 + G A UCEC 20164211 + 20164191 20164231 41 TCTGGAGGAGGCCAAGAAACCCCGAGTTATGGGGGATATTC TCTGGAGGAGGCCAAGAAACCCCAAGTTATGGGGGATATTC < 41bp 0.773073141943624 0.567557569938339 0.53614295 0.80061483 prediction 0.411031144010571 Functional Loss - KAT2B ENSG00000114166 CDS Human protein_coding chr3:20164211 chr3:20164214 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_93818 0 0 1 0 2 KAT2B chr3:20164160 3'AG 20164160 Downstream 55bp
chr3 20164214 20164214 1 + G A UCEC 20164211 + 20164191 20164231 41 TCTGGAGGAGGCCAAGAAACCCCGAGTTATGGGGGATATTC TCTGGAGGAGGCCAAGAAACCCCAAGTTATGGGGGATATTC < 41bp 0.773073141943624 0.567557569938339 0.53614295 0.80061483 prediction 0.411031144010571 Functional Loss - KAT2B ENSG00000114166 CDS Human protein_coding chr3:20164211 chr3:20164214 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_93818 0 0 1 0 2 KAT2B chr3:20164296 5'GT 20164296 Upstream 83bp
chr17 76490147 76490147 1 + C T UCS 76490144 + 76490124 76490164 41 TTTGCCGCTGCCCGCATTCCCGACGATGAACACGGAGTGGC TTTGCCGCTGCCCGCATTCCCGATGATGAACACGGAGTGGC < 41bp 0.724128491112753 0.518613348584637 0.66485286 0.4014308 prediction 0.411030285056233 Functional Loss - DNAH17 ENSG00000187775 CDS Human processed_transcript chr17:76490144 chr17:76490147 nonsynonymous SNV 0.769 0 24 hm5C_associated_SNPs_93819 0 0 0 0 1 DNAH17-AS1 chr17:76490096 3'AG 76490096 Downstream 52bp
chr13 54418506 54418506 1 + G A rs1379831 54418503 + 54418483 54418523 41 TTTTGTGGTGAAGATGAACTCTAGAATCAGGTACTGCAATT TTTTGTGGTGAAGATGAACTCTAAAATCAGGTACTGCAATT < 41bp 0.721691622729371 0.516179790699004 0.5202245 0.26826015 prediction 0.411023664060735 Functional Loss - LINC00558 ENSG00000261517 ncRNA_exonic Human lincRNA chr13:54418503 chr13:54418506 . . 0 24 hm5C_associated_SNPs_93823 0 0 0 0 1 LINC00558 chr13:54418480 3'AG 54418480 Downstream 27bp
chr6 32006886 32006886 1 + G A rs6474 32006883 + 32006863 32006903 41 TCCTGCAGACAAGCTGGTGTCTAGGAACTACCCGGACCTGT TCCTGCAGACAAGCTGGTGTCTAAGAACTACCCGGACCTGT < 41bp 0.720343452972871 0.514833943527173 0.2856598 0.13335365 prediction 0.411019018891396 Functional Loss - CYP21A2 ENSG00000231852 CDS Human protein_coding chr6:32006883 chr6:32006886 nonsynonymous SNV 0.021 0 24 hm5C_associated_SNPs_93824 2 0 0 0 1 CYP21A2 chr6:32006871 3'AG 32006871 Downstream 16bp
chr7 100346029 100346029 1 + G T UCEC 100346026 + 100346006 100346046 41 ACTTCCGGGGATGGTGGACACTGGGCCCTCGGACATAAAAA ACTTCCGGGGATGGTGGACACTGTGCCCTCGGACATAAAAA < 41bp 0.705505761582968 0.344722243731444 0.465448 0.24136043 prediction 0.411011523165937 Functional Loss - ZAN ENSG00000146839 CDS Human protein_coding chr7:100346026 chr7:100346029 nonsynonymous SNV 0.123 2 24 hm5C_associated_SNPs_93826 0 0 0 0 2 ZAN chr7:100345947 3'AG 100345947 Downstream 83bp
chr7 100346029 100346029 1 + G T UCEC 100346026 + 100346006 100346046 41 ACTTCCGGGGATGGTGGACACTGGGCCCTCGGACATAAAAA ACTTCCGGGGATGGTGGACACTGTGCCCTCGGACATAAAAA < 41bp 0.705505761582968 0.344722243731444 0.465448 0.24136043 prediction 0.411011523165937 Functional Loss - ZAN ENSG00000146839 CDS Human protein_coding chr7:100346026 chr7:100346029 nonsynonymous SNV 0.123 2 24 hm5C_associated_SNPs_93826 0 0 0 0 2 ZAN chr7:100346093 5'GT 100346093 Upstream 65bp
chr13 58209162 58209162 1 + G A LUSC 58209159 + 58209139 58209179 41 CCAACAACCTGACTGTCCCTCAGGGGCACGCGGGCTGCCAC CCAACAACCTGACTGTCCCTCAGAGGCACGCGGGCTGCCAC < 41bp 0.80317559647349 0.597673529802796 0.9626822 0.94475687 prediction 0.411004133341386 Functional Loss - PCDH17 ENSG00000118946 CDS Human protein_coding chr13:58209159 chr13:58209162 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_93828 0 0 0 0 1 PCDH17 chr13:58209245 5'GT 58209245 Upstream 84bp
chr19 55592190 55592190 1 + G A rs141593409 55592187 + 55592167 55592207 41 GGGGCTCTGCACAATTACCGCTCGGGCCGCGGGGAGCGCAG GGGGCTCTGCACAATTACCGCTCAGGCCGCGGGGAGCGCAG < 41bp 0.81775672694141 0.612256334995453 0.25055385 0.111309856 prediction 0.411000783891914 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55592187 chr19:55592190 synonymous SNV . 0 24 hm5C_associated_SNPs_93829 0 0 0 0 2 EPS8L1 chr19:55592140 3'AG 55592140 Downstream 51bp
chr19 55592190 55592190 1 + G A rs141593409 55592187 + 55592167 55592207 41 GGGGCTCTGCACAATTACCGCTCGGGCCGCGGGGAGCGCAG GGGGCTCTGCACAATTACCGCTCAGGCCGCGGGGAGCGCAG < 41bp 0.81775672694141 0.612256334995453 0.25055385 0.111309856 prediction 0.411000783891914 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55592187 chr19:55592190 synonymous SNV . 0 24 hm5C_associated_SNPs_93829 0 0 0 0 2 EPS8L1 chr19:55592222 5'GT 55592222 Upstream 33bp
chr11 118828009 118828009 1 + G T SARC 118828005 + 118827985 118828025 41 TGGTGCTGGCTTCACAGTCACTCGGCTCAGTGCATACCAGG TGGTGCTGGCTTCACAGTCACTCGTCTCAGTGCATACCAGG < 41bp 0.715250225584225 0.509753035738595 0.07465246 0.049852014 prediction 0.410994379691261 Functional Loss - UPK2 ENSG00000110375 CDS Human protein_coding chr11:118828005 chr11:118828009 synonymous SNV . 0 25 hm5C_associated_SNPs_93833 0 0 0 0 2 UPK2 chr11:118827918 3'AG 118827918 Downstream 92bp
chr11 118828009 118828009 1 + G T SARC 118828005 + 118827985 118828025 41 TGGTGCTGGCTTCACAGTCACTCGGCTCAGTGCATACCAGG TGGTGCTGGCTTCACAGTCACTCGTCTCAGTGCATACCAGG < 41bp 0.715250225584225 0.509753035738595 0.07465246 0.049852014 prediction 0.410994379691261 Functional Loss - UPK2 ENSG00000110375 CDS Human protein_coding chr11:118828005 chr11:118828009 synonymous SNV . 0 25 hm5C_associated_SNPs_93833 0 0 0 0 2 UPK2 chr11:118828056 5'GT 118828056 Upstream 48bp
chr5 177019607 177019607 1 + G T SARC 177019605 + 177019585 177019625 41 GGACGCAGCTGTATGACAAGCAGCGGGAGGAGTACCAGCCG GGACGCAGCTGTATGACAAGCATCGGGAGGAGTACCAGCCG < 41bp 0.921076470551705 0.715583092920779 0.7407216 0.28302485 prediction 0.410986755261852 Functional Loss - TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019605 chr5:177019607 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_93835 0 0 1 0 2 TMED9 chr5:177019576 3'AG 177019576 Downstream 32bp
chr5 177019607 177019607 1 + G T SARC 177019605 + 177019585 177019625 41 GGACGCAGCTGTATGACAAGCAGCGGGAGGAGTACCAGCCG GGACGCAGCTGTATGACAAGCATCGGGAGGAGTACCAGCCG < 41bp 0.921076470551705 0.715583092920779 0.7407216 0.28302485 prediction 0.410986755261852 Functional Loss - TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019605 chr5:177019607 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_93835 0 0 1 0 2 TMED9 chr5:177019676 5'GT 177019676 Upstream 70bp
chr5 156741393 156741393 1 + G A HNSC 156741390 + 156741370 156741410 41 CTGGACAGCCAGAAGTCAGACGAGGAGTATCGCGAGCTCTT CTGGACAGCCAGAAGTCAGACGAAGAGTATCGCGAGCTCTT < 41bp 0.705483011867067 0.457390593854104 0.79147077 0.37604666 prediction 0.410966023734134 Functional Loss - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156741390 chr5:156741393 synonymous SNV . 0 24 hm5C_associated_SNPs_93842 0 0 0 0 2 CYFIP2 chr5:156741352 3'AG 156741352 Downstream 42bp
chr5 156741393 156741393 1 + G A HNSC 156741390 + 156741370 156741410 41 CTGGACAGCCAGAAGTCAGACGAGGAGTATCGCGAGCTCTT CTGGACAGCCAGAAGTCAGACGAAGAGTATCGCGAGCTCTT < 41bp 0.705483011867067 0.457390593854104 0.79147077 0.37604666 prediction 0.410966023734134 Functional Loss - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156741390 chr5:156741393 synonymous SNV . 0 24 hm5C_associated_SNPs_93842 0 0 0 0 2 CYFIP2 chr5:156741471 5'GT 156741471 Upstream 79bp
chr11 61502347 61502347 1 + G T LUSC 61502344 + 61502324 61502364 41 TTGCCTGTGTCCTGCGAGGCCGCGGTTCGCCCCTGGAGTCA TTGCCTGTGTCCTGCGAGGCCGCTGTTCGCCCCTGGAGTCA < 41bp 0.705481376349889 0.302663524194317 0.2562815 0.02373311 prediction 0.410962752699779 Functional Loss - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61502344 chr11:61502347 nonsynonymous SNV 0.845 2 24 hm5C_associated_SNPs_93844 0 0 0 0 1 DAGLA chr11:61502321 3'AG 61502321 Downstream 27bp
chr11 61502346 61502346 1 + C T UCEC 61502344 + 61502324 61502364 41 TTGCCTGTGTCCTGCGAGGCCGCGGTTCGCCCCTGGAGTCA TTGCCTGTGTCCTGCGAGGCCGTGGTTCGCCCCTGGAGTCA < 41bp 0.705481376349889 0.426536548356377 0.2562815 0.18575203 prediction 0.410962752699779 Functional Loss - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61502344 chr11:61502346 nonsynonymous SNV 0.824 3 23 hm5C_associated_SNPs_93845 0 0 0 0 1 DAGLA chr11:61502321 3'AG 61502321 Downstream 26bp
chr1 161642977 161642977 1 + T C UCEC 161642976 + 161642956 161642996 41 CACTGCACAGGAAACATAGGCTACACGCTGTACTCATCCAA CACTGCACAGGAAACATAGGCCACACGCTGTACTCATCCAA < 41bp 0.705480075226014 0.434882861446232 0.14116013 0.03965214 prediction 0.410960150452027 Functional Loss - FCGR2B ENSG00000072694 CDS Human protein_coding chr1:161642976 chr1:161642977 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_93846 0 0 0 0 1 FCGR2B chr1:161643019 5'GT 161643019 Upstream 43bp
chr22 40080468 40080468 1 + C T UCEC 40080465 + 40080445 40080485 41 TGCAGGGCTCCTGGGCATCTCTGCGGTCACCAAGGGTCAAC TGCAGGGCTCCTGGGCATCTCTGTGGTCACCAAGGGTCAAC < 41bp 0.723442286126621 0.517962702756681 0.3533596 0.21579361 prediction 0.410959166739878 Functional Loss - CACNA1I ENSG00000100346 CDS Human protein_coding chr22:40080465 chr22:40080468 nonsynonymous SNV 0.991 3 24 hm5C_associated_SNPs_93847 0 0 0 0 1 CACNA1I chr22:40080503 5'GT 40080503 Upstream 36bp
chr19 34810943 34810943 1 + C T LIHC 34810940 + 34810920 34810960 41 GTGCCAGAAAAAAAGAACAGCGGCAGTGGCGGCGGCTTATC GTGCCAGAAAAAAAGAACAGCGGTAGTGGCGGCGGCTTATC < 41bp 0.766031598306953 0.560556916048546 0.57914543 0.73927414 prediction 0.410949364516814 Functional Loss - KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34810940 chr19:34810943 synonymous SNV . 0 24 hm5C_associated_SNPs_93850 0 0 0 0 1 KIAA0355 chr19:34811021 5'GT 34811021 Upstream 79bp
chr1 156848990 156848990 1 + C T rs555107102 156848987 + 156848967 156849007 41 GCCCCCTGGGTCTGGGGCAGCTGCTGGCCGTGGCTAGCCAG GCCCCCTGGGTCTGGGGCAGCTGTTGGCCGTGGCTAGCCAG < 41bp 0.716479692235587 0.51100533276875 0.25886518 0.15349483 prediction 0.410948718933674 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156848987 chr1:156848990 synonymous SNV . 0 24 hm5C_associated_SNPs_93851 0 0 0 0 1 NTRK1 chr1:156848914 3'AG 156848914 Downstream 77bp
chr12 113496250 113496250 1 + G A SKCM 113496247 + 113496227 113496267 41 AGTCCATGCACCAGTTTCGCCAGGACACAGGTGAGCAGACA AGTCCATGCACCAGTTTCGCCAGAACACAGGTGAGCAGACA < 41bp 0.807371763347593 0.601899369063144 0.47248802 0.6091588 prediction 0.410944788568898 Functional Loss - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113496247 chr12:113496250 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_93852 0 0 0 0 1 DTX1 chr12:113496256 5'GT 113496256 Upstream 7bp
chr12 129028531 129028531 1 + T C BRCA 129028530 + 129028510 129028550 41 TGAAGAAGGGGGTGAACATCCTGAGTGCTCAGACCCGTGAG TGAAGAAGGGGGTGAACATCCCGAGTGCTCAGACCCGTGAG < 41bp 0.785287737194753 0.579818481982411 0.2954889 0.72570115 prediction 0.410938510424685 Functional Loss - TMEM132C ENSG00000181234 CDS Human protein_coding chr12:129028530 chr12:129028531 nonsynonymous SNV 0.952 2 22 hm5C_associated_SNPs_93857 0 0 0 0 1 TMEM132C chr12:129028502 3'AG 129028502 Downstream 30bp
chr19 4359240 4359240 1 + C T COAD 4359238 + 4359218 4359258 41 GGAGCCAGGAGCACACCTACCTCGACAAGCTTAAGGTGAGC GGAGCCAGGAGCACACCTACCTTGACAAGCTTAAGGTGAGC < 41bp 0.849459091369038 0.643991052603448 0.26407892 0.023291826 prediction 0.410936077531181 Functional Loss - MPND ENSG00000008382 CDS Human protein_coding chr19:4359238 chr19:4359240 synonymous SNV . 0 23 hm5C_associated_SNPs_93859 0 0 1 10 1 MPND chr19:4359160 3'AG 4359160 Downstream 81bp
chr1 23238964 23238964 1 + G A SKCM 23238961 + 23238941 23238981 41 AACCTGCCGCTGCTGGACCGCACGATCCCCGACTACACCAG AACCTGCCGCTGCTGGACCGCACAATCCCCGACTACACCAG < 41bp 0.813767866962297 0.608302525341619 0.107385844 0.04091975 prediction 0.410930683241357 Functional Loss - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23238961 chr1:23238964 synonymous SNV . 0 24 hm5C_associated_SNPs_93861 0 0 0 0 1 EPHB2 chr1:23238937 3'AG 23238937 Downstream 28bp
chrX 153608673 153608673 1 + G T LUAD 153608669 + 153608649 153608689 41 GCCCGAGTCTGCCGGCCCGTCCAGGGCTGTCCGCCAGTCAG GCCCGAGTCTGCCGGCCCGTCCAGTGCTGTCCGCCAGTCAG < 41bp 0.74748548152029 0.542023489573692 0.66940707 0.3260634 prediction 0.410923983893195 Functional Loss - EMD ENSG00000102119 CDS Human protein_coding chrX:153608669 chrX:153608673 nonsynonymous SNV 0.584 2 25 hm5C_associated_SNPs_93865 0 0 1 0 2 EMD chrX:153608594 3'AG 153608594 Downstream 80bp
chrX 153608673 153608673 1 + G T LUAD 153608669 + 153608649 153608689 41 GCCCGAGTCTGCCGGCCCGTCCAGGGCTGTCCGCCAGTCAG GCCCGAGTCTGCCGGCCCGTCCAGTGCTGTCCGCCAGTCAG < 41bp 0.74748548152029 0.542023489573692 0.66940707 0.3260634 prediction 0.410923983893195 Functional Loss - EMD ENSG00000102119 CDS Human protein_coding chrX:153608669 chrX:153608673 nonsynonymous SNV 0.584 2 25 hm5C_associated_SNPs_93865 0 0 1 0 2 EMD chrX:153608727 5'GT 153608727 Upstream 55bp
chr11 71906494 71906494 1 + G A SKCM 71906491 + 71906471 71906511 41 TGCTCCCCCAACTTGGGGCCCTGGATCCAGCAGGTATGCAT TGCTCCCCCAACTTGGGGCCCTGAATCCAGCAGGTATGCAT < 41bp 0.810797162705588 0.605335246335811 0.5434044 0.55641085 prediction 0.410923832739555 Functional Loss - FOLR1 ENSG00000110195 CDS Human protein_coding chr11:71906491 chr11:71906494 stopgain 0.997 1 24 hm5C_associated_SNPs_93866 0 0 0 0 1 FOLR1 chr11:71906503 5'GT 71906503 Upstream 10bp
chr17 7288068 7288068 1 + C T UCEC 7288065 + 7288045 7288085 41 TTTCCCACCTGGAGGGGCTGCTGCAAGAGGTGGGAACCCCC TTTCCCACCTGGAGGGGCTGCTGTAAGAGGTGGGAACCCCC < 41bp 0.705457240196379 0.497556308190318 0.553966 0.47466487 prediction 0.410914480392757 Functional Loss - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7288065 chr17:7288068 stopgain 0.777 1 24 hm5C_associated_SNPs_93869 0 0 0 0 1 TNK1 chr17:7288073 5'GT 7288073 Upstream 6bp
chr5 176820706 176820706 1 + C T SKCM 176820703 + 176820683 176820723 41 CTCCTGATCTAGGCTCCCACCTCCATGTCCAGAGCAGAGGC CTCCTGATCTAGGCTCCCACCTCTATGTCCAGAGCAGAGGC < 41bp 0.772634589643705 0.567178937635904 0.9646562 0.9259022 prediction 0.410911304015603 Functional Loss - SLC34A1 ENSG00000131183 CDS Human protein_coding chr5:176820703 chr5:176820706 synonymous SNV . 0 24 hm5C_associated_SNPs_93870 0 0 0 0 2 SLC34A1 chr5:176820695 3'AG 176820695 Downstream 12bp
chr5 176820706 176820706 1 + C T SKCM 176820703 + 176820683 176820723 41 CTCCTGATCTAGGCTCCCACCTCCATGTCCAGAGCAGAGGC CTCCTGATCTAGGCTCCCACCTCTATGTCCAGAGCAGAGGC < 41bp 0.772634589643705 0.567178937635904 0.9646562 0.9259022 prediction 0.410911304015603 Functional Loss - SLC34A1 ENSG00000131183 CDS Human protein_coding chr5:176820703 chr5:176820706 synonymous SNV . 0 24 hm5C_associated_SNPs_93870 0 0 0 0 2 SLC34A1 chr5:176820764 5'GT 176820764 Upstream 59bp
chr1 47280843 47280843 1 + G T READ 47280841 + 47280821 47280861 41 ACCACCACCAGTGGTATCTCCTGGTTTCTCTACTGCATGGC ACCACCACCAGTGGTATCTCCTTGTTTCTCTACTGCATGGC < 41bp 0.705455424995276 0.365256615326362 0.6022706 0.0816825 prediction 0.410910849990553 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47280841 chr1:47280843 nonsynonymous SNV 0.929 4 23 hm5C_associated_SNPs_93871 0 0 0 0 2 CYP4B1 chr1:47280746 3'AG 47280746 Downstream 98bp
chr1 47280843 47280843 1 + G T READ 47280841 + 47280821 47280861 41 ACCACCACCAGTGGTATCTCCTGGTTTCTCTACTGCATGGC ACCACCACCAGTGGTATCTCCTTGTTTCTCTACTGCATGGC < 41bp 0.705455424995276 0.365256615326362 0.6022706 0.0816825 prediction 0.410910849990553 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47280841 chr1:47280843 nonsynonymous SNV 0.929 4 23 hm5C_associated_SNPs_93871 0 0 0 0 2 CYP4B1 chr1:47280936 5'GT 47280936 Upstream 94bp
chr2 234869692 234869692 1 + G A rs11563130 234869689 + 234869669 234869709 41 GAAGACAGAAATGGCCGGGACGAGATGGACATAGAACTCCA GAAGACAGAAATGGCCGGGACGAAATGGACATAGAACTCCA < 41bp 0.810598155493854 0.605143581941922 0.32043192 0.17845976 prediction 0.410909147103864 Functional Loss - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234869689 chr2:234869692 synonymous SNV . 0 24 hm5C_associated_SNPs_93872 0 0 0 0 1 TRPM8 chr2:234869710 5'GT 234869710 Upstream 19bp
chr22 46709854 46709854 1 + C T CESC 46709852 + 46709832 46709872 41 AATCTCGCAAGGAAGTCCTCCTCGGGGCCTGTTTGGAGCGG AATCTCGCAAGGAAGTCCTCCTTGGGGCCTGTTTGGAGCGG < 41bp 0.705452396448978 0.425302467981058 0.07723442 0.040694356 prediction 0.410904792897956 Functional Loss - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46709852 chr22:46709854 nonsynonymous SNV 0.177 1 23 hm5C_associated_SNPs_93874 0 0 1 0 2 GTSE1 chr22:46709787 3'AG 46709787 Downstream 68bp
chr22 46709854 46709854 1 + C T CESC 46709852 + 46709832 46709872 41 AATCTCGCAAGGAAGTCCTCCTCGGGGCCTGTTTGGAGCGG AATCTCGCAAGGAAGTCCTCCTTGGGGCCTGTTTGGAGCGG < 41bp 0.705452396448978 0.425302467981058 0.07723442 0.040694356 prediction 0.410904792897956 Functional Loss - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46709852 chr22:46709854 nonsynonymous SNV 0.177 1 23 hm5C_associated_SNPs_93874 0 0 1 0 2 GTSE1 chr22:46709910 5'GT 46709910 Upstream 57bp
chr8 87437508 87437508 1 + G A UCEC 87437505 + 87437485 87437525 41 CTATTATGTGGATCATAATACTCGAACTACCACATGGGAGA CTATTATGTGGATCATAATACTCAAACTACCACATGGGAGA < 41bp 0.791020110026575 0.585567896314483 0.5138908 0.24985728 prediction 0.410904427424183 Functional Loss - WWP1 ENSG00000123124 CDS Human protein_coding chr8:87437505 chr8:87437508 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_93875 0 0 1 0 1 WWP1 chr8:87437452 3'AG 87437452 Downstream 57bp
chr16 57608907 57608907 1 + C T LIHC 57608904 + 57608884 57608924 41 ACTGTCACTGTGCTGGGCCTCACCGTGCTGCTGGGAACCAC ACTGTCACTGTGCTGGGCCTCACTGTGCTGCTGGGAACCAC < 41bp 0.782305883405066 0.57685649228326 0.13350973 0.04357475 prediction 0.410898782243612 Functional Loss - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57608904 chr16:57608907 synonymous SNV . 0 24 hm5C_associated_SNPs_93877 0 0 0 0 1 ADGRG5 chr16:57609004 5'GT 57609004 Upstream 98bp
chr19 11130308 11130308 1 + G A CESC 11130305 + 11130285 11130325 41 CGGGCCTTTGTCCCCCAGCTCCGGAGTGGGAAGTTCAACGT CGGGCCTTTGTCCCCCAGCTCCGAAGTGGGAAGTTCAACGT < 41bp 0.705447412062374 0.460946034000097 0.84211195 0.29961735 prediction 0.410894824124748 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11130305 chr19:11130308 synonymous SNV . 0 24 hm5C_associated_SNPs_93878 0 0 1 0 2 SMARCA4 chr19:11130267 3'AG 11130267 Downstream 42bp
chr19 11130308 11130308 1 + G A CESC 11130305 + 11130285 11130325 41 CGGGCCTTTGTCCCCCAGCTCCGGAGTGGGAAGTTCAACGT CGGGCCTTTGTCCCCCAGCTCCGAAGTGGGAAGTTCAACGT < 41bp 0.705447412062374 0.460946034000097 0.84211195 0.29961735 prediction 0.410894824124748 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11130305 chr19:11130308 synonymous SNV . 0 24 hm5C_associated_SNPs_93878 0 0 1 0 2 SMARCA4 chr19:11130377 5'GT 11130377 Upstream 70bp
chr4 48852083 48852083 1 + C T STAD 48852080 + 48852060 48852100 41 CTTTACGATCAGGACAAGCACGACGATCTTCACCACCTGGG CTTTACGATCAGGACAAGCACGATGATCTTCACCACCTGGG < 41bp 0.705444926117401 0.485606964965012 0.24768385 0.2896267 prediction 0.410889852234801 Functional Loss - OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48852080 chr4:48852083 stopgain 0.440 1 24 hm5C_associated_SNPs_93879 0 0 1 0 1 OCIAD1 chr4:48852099 5'GT 48852099 Upstream 17bp
chr14 75536369 75536369 1 + G A rs175498 75536366 + 75536346 75536386 41 AAGCCAGCTGAGAGCGCCTGCGCGGCTGTCGGTTGATGGGG AAGCCAGCTGAGAGCGCCTGCGCAGCTGTCGGTTGATGGGG < 41bp 0.810194360926129 0.604753593022812 0.23155639 0.12019262 prediction 0.410881535806634 Functional Loss - ZC2HC1C ENSG00000119703 UTR5 Human protein_coding chr14:75536366 chr14:75536369 . . 0 24 hm5C_associated_SNPs_93880 0 0 0 0 1 ZC2HC1C chr14:75536452 5'GT 75536452 Upstream 84bp
chr9 382633 382633 1 + C T UCEC 382631 + 382611 382651 41 AGCAGCAGTAACCCAGACCTCGCGGGGACACACTCCGCAGC AGCAGCAGTAACCCAGACCTCGTGGGGACACACTCCGCAGC < 41bp 0.835229149786444 0.629789902369372 0.9223299 0.92500126 prediction 0.410878494834145 Functional Loss - DOCK8 ENSG00000107099 CDS Human protein_coding chr9:382631 chr9:382633 nonsynonymous SNV 0.005 0 23 hm5C_associated_SNPs_93881 0 0 1 0 1 DOCK8 chr9:382685 5'GT 382685 Upstream 53bp
chr19 41442124 41442124 1 + G A SKCM 41442121 + 41442101 41442141 41 AACGCTGAGGCCTTCTCTGGCCGGGGAAAAATCGTCATCAT AACGCTGAGGCCTTCTCTGGCCGAGGAAAAATCGTCATCAT < 41bp 0.705437986509103 0.477157357451777 0.91557294 0.43576047 prediction 0.410875973018207 Functional Loss - CYP2B7P ENSG00000256612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:41442121 chr19:41442124 . . 0 24 hm5C_associated_SNPs_93883 0 0 0 0 1 CYP2B7P chr19:41442164 5'GT 41442164 Upstream 41bp
chr6 133777749 133777749 1 + G T STAD 133777746 + 133777726 133777766 41 AACAGCAGTGAAACCACAGCCACGACTGGAGATGGAGCGCT AACAGCAGTGAAACCACAGCCACTACTGGAGATGGAGCGCT < 41bp 0.7054275571559 0.3371945337005 0.24077895 0.6386448 prediction 0.4108551143118 Functional Loss - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133777746 chr6:133777749 synonymous SNV . 0 24 hm5C_associated_SNPs_93887 0 0 1 0 1 EYA4 chr6:133777786 5'GT 133777786 Upstream 38bp
chr2 28762004 28762004 1 + G T LGG 28762000 + 28761980 28762020 41 TGTAAACCTGGTGGACCTCTCTGAGGTTGCAGAGGTCTCTC TGTAAACCTGGTGGACCTCTCTGATGTTGCAGAGGTCTCTC < 41bp 0.705427012587903 0.491883550932287 0.7827852 0.20918587 prediction 0.410854025175805 Functional Loss - PLB1 ENSG00000163803 CDS Human protein_coding chr2:28762000 chr2:28762004 nonsynonymous SNV 0.147 2 25 hm5C_associated_SNPs_93888 0 0 0 0 2 PLB1 chr2:28761966 3'AG 28761966 Downstream 39bp
chr2 28762004 28762004 1 + G T LGG 28762000 + 28761980 28762020 41 TGTAAACCTGGTGGACCTCTCTGAGGTTGCAGAGGTCTCTC TGTAAACCTGGTGGACCTCTCTGATGTTGCAGAGGTCTCTC < 41bp 0.705427012587903 0.491883550932287 0.7827852 0.20918587 prediction 0.410854025175805 Functional Loss - PLB1 ENSG00000163803 CDS Human protein_coding chr2:28762000 chr2:28762004 nonsynonymous SNV 0.147 2 25 hm5C_associated_SNPs_93888 0 0 0 0 2 PLB1 chr2:28762045 5'GT 28762045 Upstream 42bp
chr11 721146 721146 1 + G A rs375898678 721143 + 721123 721163 41 CGCCCATCCCCTTCCAGCACCGCGGCGGGGATTCCCCGGAG CGCCCATCCCCTTCCAGCACCGCAGCGGGGATTCCCCGGAG < 41bp 0.832770864062716 0.627346662253742 0.7568936 0.35798734 prediction 0.410848403617948 Functional Loss - EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:721143 chr11:721146 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_93889 0 0 1 0 1 EPS8L2 chr11:721206 5'GT 721206 Upstream 61bp
chr17 1939306 1939306 1 + C T UCEC 1939303 + 1939283 1939323 41 ATGGTGATGGGTGACGTGACCTACGGGGCTTGCTGTGTGGA ATGGTGATGGGTGACGTGACCTATGGGGCTTGCTGTGTGGA < 41bp 0.724624054639975 0.519203985244436 0.014389932 0.021276534 prediction 0.410840138791076 Functional Loss - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1939303 chr17:1939306 synonymous SNV . 0 24 hm5C_associated_SNPs_93894 0 0 1 0 2 DPH1 chr17:1939264 3'AG 1939264 Downstream 43bp
chr17 1939306 1939306 1 + C T UCEC 1939303 + 1939283 1939323 41 ATGGTGATGGGTGACGTGACCTACGGGGCTTGCTGTGTGGA ATGGTGATGGGTGACGTGACCTATGGGGCTTGCTGTGTGGA < 41bp 0.724624054639975 0.519203985244436 0.014389932 0.021276534 prediction 0.410840138791076 Functional Loss - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1939303 chr17:1939306 synonymous SNV . 0 24 hm5C_associated_SNPs_93894 0 0 1 0 2 DPH1 chr17:1939385 5'GT 1939385 Upstream 80bp
chr15 89922410 89922410 1 + G T rs143815615 89922406 + 89922386 89922426 41 CCGTCTTCCTGCCCACAGCCCGCCGGACCCTCCGTCGCGGC CCGTCTTCCTGCCCACAGCCCGCCTGACCCTCCGTCGCGGC < 41bp 0.705419619484879 0.495988963149264 0.5191392 0.14446187 prediction 0.410839238969757 Functional Loss - MIR9-3HG ENSG00000255571 ncRNA_exonic Human lincRNA chr15:89922406 chr15:89922410 . . 0 25 hm5C_associated_SNPs_93895 0 0 0 0 1 MIR9-3HG chr15:89922500 5'GT 89922500 Upstream 91bp
chr12 69145899 69145899 1 + G T LUSC 69145896 + 69145876 69145916 41 CGATGTCATCTGCCATGTTGCTGGTTGCTGTGCCCTTCTTT CGATGTCATCTGCCATGTTGCTGTTTGCTGTGCCCTTCTTT < 41bp 0.705418299702854 0.304051800105107 0.15227956 0.18725115 prediction 0.410836599405708 Functional Loss - SLC35E3 ENSG00000175782 CDS Human protein_coding chr12:69145896 chr12:69145899 nonsynonymous SNV 0.317 0 24 hm5C_associated_SNPs_93896 0 0 1 0 2 SLC35E3 chr12:69145812 3'AG 69145812 Downstream 88bp
chr12 69145899 69145899 1 + G T LUSC 69145896 + 69145876 69145916 41 CGATGTCATCTGCCATGTTGCTGGTTGCTGTGCCCTTCTTT CGATGTCATCTGCCATGTTGCTGTTTGCTGTGCCCTTCTTT < 41bp 0.705418299702854 0.304051800105107 0.15227956 0.18725115 prediction 0.410836599405708 Functional Loss - SLC35E3 ENSG00000175782 CDS Human protein_coding chr12:69145896 chr12:69145899 nonsynonymous SNV 0.317 0 24 hm5C_associated_SNPs_93896 0 0 1 0 2 SLC35E3 chr12:69145970 5'GT 69145970 Upstream 72bp
chr12 104709645 104709645 1 + G A UCEC 104709642 + 104709622 104709662 41 AGGACAAGCCCTGCAAGACTCTCGAAATTATGGATGGAAAG AGGACAAGCCCTGCAAGACTCTCAAAATTATGGATGGAAAG < 41bp 0.778920896286043 0.573502723166176 0.9047246 0.15593159 prediction 0.410836346239734 Functional Loss - TXNRD1 ENSG00000198431 CDS Human protein_coding chr12:104709642 chr12:104709645 nonsynonymous SNV 0.761 1 24 hm5C_associated_SNPs_93897 0 0 1 0 2 TXNRD1 chr12:104709555 3'AG 104709555 Downstream 91bp
chr12 104709645 104709645 1 + G A UCEC 104709642 + 104709622 104709662 41 AGGACAAGCCCTGCAAGACTCTCGAAATTATGGATGGAAAG AGGACAAGCCCTGCAAGACTCTCAAAATTATGGATGGAAAG < 41bp 0.778920896286043 0.573502723166176 0.9047246 0.15593159 prediction 0.410836346239734 Functional Loss - TXNRD1 ENSG00000198431 CDS Human protein_coding chr12:104709642 chr12:104709645 nonsynonymous SNV 0.761 1 24 hm5C_associated_SNPs_93897 0 0 1 0 2 TXNRD1 chr12:104709674 5'GT 104709674 Upstream 30bp
chr9 131243904 131243904 1 + C T PAAD 131243901 + 131243881 131243921 41 AACAAGGAGCACTGCTGAAACGGCTGGCGGAGGCCGACTCA AACAAGGAGCACTGCTGAAACGGTTGGCGGAGGCCGACTCA < 41bp 0.736342401888119 0.530924658462257 0.50883853 0.34115994 prediction 0.410835486851723 Functional Loss - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131243901 chr9:131243904 synonymous SNV . 0 24 hm5C_associated_SNPs_93899 0 0 1 0 2 ODF2 chr9:131243859 3'AG 131243859 Downstream 46bp
chr9 131243904 131243904 1 + C T PAAD 131243901 + 131243881 131243921 41 AACAAGGAGCACTGCTGAAACGGCTGGCGGAGGCCGACTCA AACAAGGAGCACTGCTGAAACGGTTGGCGGAGGCCGACTCA < 41bp 0.736342401888119 0.530924658462257 0.50883853 0.34115994 prediction 0.410835486851723 Functional Loss - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131243901 chr9:131243904 synonymous SNV . 0 24 hm5C_associated_SNPs_93899 0 0 1 0 2 ODF2 chr9:131243930 5'GT 131243930 Upstream 27bp
chrX 49021688 49021688 1 + G A UCEC 49021685 + 49021665 49021705 41 GCCTCGAGGGGTGGGAGAGCCCCGAAAAGGAGTTGGTGGGT GCCTCGAGGGGTGGGAGAGCCCCAAAAAGGAGTTGGTGGGT < 41bp 0.817388908975295 0.611973184308741 0.10968691 0.052440137 prediction 0.410831449333108 Functional Loss - MAGIX ENSG00000017621 CDS Human other chrX:49021685 chrX:49021688 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_93900 0 0 0 0 1 MAGIX chrX:49021699 5'GT 49021699 Upstream 12bp
chr7 63709529 63709529 1 + G C BLCA 63709525 + 63709505 63709545 41 AGACCGGGATCCCCTGGAAGCCGAGAAATGGTGAGTGCTGG AGACCGGGATCCCCTGGAAGCCGACAAATGGTGAGTGCTGG < 41bp 0.705414136563886 0.40213690887426 0.6229573 0.39181933 prediction 0.410828273127771 Functional Loss - ZNF679 ENSG00000197123 CDS Human protein_coding chr7:63709525 chr7:63709529 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_93902 0 0 0 0 1 ZNF679 chr7:63709534 5'GT 63709534 Upstream 6bp
chr4 15517558 15517558 1 + C T COAD 15517555 + 15517535 15517575 41 CTGGAAGATGAAGGCCTTTACACCGGGGTAAGACCAGAGGT CTGGAAGATGAAGGCCTTTACACTGGGGTAAGACCAGAGGT < 41bp 0.705406580058582 0.478876357705077 0.3276161 0.37770396 prediction 0.410813160117164 Functional Loss - CC2D2A ENSG00000048342 CDS Human protein_coding chr4:15517555 chr4:15517558 synonymous SNV . 0 24 hm5C_associated_SNPs_93907 0 0 0 0 2 CC2D2A chr4:15517491 3'AG 15517491 Downstream 68bp
chr4 15517558 15517558 1 + C T COAD 15517555 + 15517535 15517575 41 CTGGAAGATGAAGGCCTTTACACCGGGGTAAGACCAGAGGT CTGGAAGATGAAGGCCTTTACACTGGGGTAAGACCAGAGGT < 41bp 0.705406580058582 0.478876357705077 0.3276161 0.37770396 prediction 0.410813160117164 Functional Loss - CC2D2A ENSG00000048342 CDS Human protein_coding chr4:15517555 chr4:15517558 synonymous SNV . 0 24 hm5C_associated_SNPs_93907 0 0 0 0 2 CC2D2A chr4:15517627 5'GT 15517627 Upstream 70bp
chr11 60698120 60698120 1 + G T rs367930901 60698116 + 60698096 60698136 41 CTGCCACCGTGCTGGGCTCACAGAGCCAGATTCCAGGTGGG CTGCCACCGTGCTGGGCTCACAGATCCAGATTCCAGGTGGG < 41bp 0.716777315679022 0.511371877818797 0.87379175 0.3844248 prediction 0.41081087572045 Functional Loss - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60698116 chr11:60698120 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_93909 0 0 1 0 1 TMEM132A chr11:60698131 5'GT 60698131 Upstream 12bp
chr9 133325707 133325707 1 + G A rs184403245 133325704 + 133325684 133325724 41 GATTCCAGACGCCGGGAACTCACGCCTCCAATCCCAGGTAC GATTCCAGACGCCGGGAACTCACACCTCCAATCCCAGGTAC < 41bp 0.705402300616054 0.446483722934595 0.04018271 0.009254664 prediction 0.410804601232108 Functional Loss - ASS1 ENSG00000130707 UTR5 Human protein_coding chr9:133325704 chr9:133325707 . . 0 24 hm5C_associated_SNPs_93912 1 0 0 0 1 ASS1 chr9:133325720 5'GT 133325720 Upstream 14bp
chr18 9886676 9886676 1 + C T LUSC 9886674 + 9886654 9886694 41 GCCAAAGAGAAGGCCTTTCTCCCCATGGTCAGCCACACGTT GCCAAAGAGAAGGCCTTTCTCCTCATGGTCAGCCACACGTT < 41bp 0.84841108378749 0.643010535906495 0.117535174 0.109862626 prediction 0.410801095761991 Functional Loss - TXNDC2 ENSG00000168454 CDS Human protein_coding chr18:9886674 chr18:9886676 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_93913 0 0 0 0 1 TXNDC2 chr18:9886586 3'AG 9886586 Downstream 91bp
chr11 65000689 65000689 1 + T C STAD 65000688 + 65000668 65000708 41 AGTTTGGGCTCAGCCTATACCTGGTGCAGGCCCTGTTTGGA AGTTTGGGCTCAGCCTATACCCGGTGCAGGCCCTGTTTGGA < 41bp 0.782916888301658 0.577525591029141 0.5954942 0.740185 prediction 0.410782594545032 Functional Loss - SLC22A20;POLA2 ENSG00000197847 ncRNA_exonic Human transcribed_unitary_pseudogene chr11:65000688 chr11:65000689 . . 0 22 hm5C_associated_SNPs_93923 0 0 0 0 1 SLC22A20;POLA2 chr11:65000621 3'AG 65000621 Downstream 69bp
chr1 27269216 27269216 1 + C T rs534684686 27269213 + 27269193 27269233 41 AAACTGAAGCCCAACCTAGGCAACGGGGCAGACCTGCCCAA AAACTGAAGCCCAACCTAGGCAATGGGGCAGACCTGCCCAA < 41bp 0.72959100621243 0.524200467496212 0.2211841 0.17905813 prediction 0.410781077432436 Functional Loss - NUDC ENSG00000090273 CDS Human protein_coding chr1:27269213 chr1:27269216 synonymous SNV . 0 24 hm5C_associated_SNPs_93924 0 0 1 0 2 NUDC chr1:27269151 3'AG 27269151 Downstream 66bp
chr1 27269216 27269216 1 + C T rs534684686 27269213 + 27269193 27269233 41 AAACTGAAGCCCAACCTAGGCAACGGGGCAGACCTGCCCAA AAACTGAAGCCCAACCTAGGCAATGGGGCAGACCTGCCCAA < 41bp 0.72959100621243 0.524200467496212 0.2211841 0.17905813 prediction 0.410781077432436 Functional Loss - NUDC ENSG00000090273 CDS Human protein_coding chr1:27269213 chr1:27269216 synonymous SNV . 0 24 hm5C_associated_SNPs_93924 0 0 1 0 2 NUDC chr1:27269267 5'GT 27269267 Upstream 52bp
chr1 32636331 32636331 1 + C T SKCM 32636328 + 32636308 32636348 41 GCTTGGATAAAATTGAGTTTCTCCAGAGCCACGAGAACCAG GCTTGGATAAAATTGAGTTTCTCTAGAGCCACGAGAACCAG < 41bp 0.767218480366713 0.561828206123372 0.9564289 0.91328186 prediction 0.41078054848668 Functional Loss - KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32636328 chr1:32636331 stopgain 1.000 1 24 hm5C_associated_SNPs_93926 0 0 1 0 1 KPNA6 chr1:32636308 3'AG 32636308 Downstream 24bp
chr2 36706779 36706779 1 + C T rs146435632 36706776 + 36706756 36706796 41 CGCCACTGCGTTGCGACCGTCTGCGGACAGACCTGCACAAA CGCCACTGCGTTGCGACCGTCTGTGGACAGACCTGCACAAA < 41bp 0.705390135113729 0.483458486662999 0.66703093 0.32019904 prediction 0.410780270227458 Functional Loss - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36706776 chr2:36706779 synonymous SNV . 0 24 hm5C_associated_SNPs_93927 0 0 1 0 1 CRIM1 chr2:36706837 5'GT 36706837 Upstream 59bp
chr4 48853837 48853837 1 + A C GBM 48853833 + 48853813 48853853 41 TCATTTACAGGCACTATTATCAAAAGTCAAAATATGACTCA TCATTTACAGGCACTATTATCAAACGTCAAAATATGACTCA < 41bp 0.705388330451167 0.309516679633904 0.33848423 0.35844433 prediction 0.410776660902333 Functional Loss - OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48853833 chr4:48853837 nonsynonymous SNV 0.333 0 25 hm5C_associated_SNPs_93929 0 0 1 0 1 OCIAD1 chr4:48853823 3'AG 48853823 Downstream 15bp
chr4 2906643 2906643 1 + G T LUSC 2906641 + 2906621 2906661 41 CCCCACTCAGACACAGTTTTCAGAAGCAGCAGCGGGAGAAG CCCCACTCAGACACAGTTTTCATAAGCAGCAGCGGGAGAAG < 41bp 0.70538325957954 0.36345582589826 0.9005652 0.16682759 prediction 0.41076651915908 Functional Loss - ADD1 ENSG00000087274 CDS Human protein_coding chr4:2906641 chr4:2906643 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_93933 0 0 1 0 1 ADD1 chr4:2906742 5'GT 2906742 Upstream 100bp
chr9 100840602 100840602 1 + T C STAD 100840601 + 100840581 100840621 41 CAGCGCATACCCGCTCCAGCCTGAGGACGTCAACCTGCGGG CAGCGCATACCCGCTCCAGCCCGAGGACGTCAACCTGCGGG < 41bp 0.805900099653827 0.600517355931605 0.52233934 0.703438 prediction 0.410765487444445 Functional Loss - NANS ENSG00000095380 CDS Human protein_coding chr9:100840601 chr9:100840602 synonymous SNV . 0 22 hm5C_associated_SNPs_93934 0 0 1 0 1 NANS chr9:100840629 5'GT 100840629 Upstream 28bp
chr10 51582221 51582221 1 + A T LUSC 51582217 + 51582197 51582237 41 CTTGATGGCTCATGCTAGTTCAGCAAATATTGGGCCCTTCC CTTGATGGCTCATGCTAGTTCAGCTAATATTGGGCCCTTCC < 41bp 0.705376680821666 0.367898642788312 0.13287506 0.15342513 prediction 0.410753361643331 Functional Loss - NCOA4 ENSG00000138293 CDS Human other chr10:51582217 chr10:51582221 synonymous SNV . 0 25 hm5C_associated_SNPs_93939 0 0 1 0 2 NCOA4 chr10:51582183 3'AG 51582183 Downstream 39bp
chr10 51582221 51582221 1 + A T LUSC 51582217 + 51582197 51582237 41 CTTGATGGCTCATGCTAGTTCAGCAAATATTGGGCCCTTCC CTTGATGGCTCATGCTAGTTCAGCTAATATTGGGCCCTTCC < 41bp 0.705376680821666 0.367898642788312 0.13287506 0.15342513 prediction 0.410753361643331 Functional Loss - NCOA4 ENSG00000138293 CDS Human other chr10:51582217 chr10:51582221 synonymous SNV . 0 25 hm5C_associated_SNPs_93939 0 0 1 0 2 NCOA4 chr10:51582272 5'GT 51582272 Upstream 52bp
chr17 79988245 79988245 1 + C T UCEC 79988243 + 79988223 79988263 41 TGGCCGAGGTGAGCAGGGTGCGCGTGGAGCTGCAGGAGCAG TGGCCGAGGTGAGCAGGGTGCGTGTGGAGCTGCAGGAGCAG < 41bp 0.705375945250536 0.448019475860552 0.5850456 0.5403138 prediction 0.410751890501071 Functional Loss - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79988243 chr17:79988245 synonymous SNV . 0 23 hm5C_associated_SNPs_93940 0 0 1 0 2 LRRC45 chr17:79988195 3'AG 79988195 Downstream 51bp
chr17 79988245 79988245 1 + C T UCEC 79988243 + 79988223 79988263 41 TGGCCGAGGTGAGCAGGGTGCGCGTGGAGCTGCAGGAGCAG TGGCCGAGGTGAGCAGGGTGCGTGTGGAGCTGCAGGAGCAG < 41bp 0.705375945250536 0.448019475860552 0.5850456 0.5403138 prediction 0.410751890501071 Functional Loss - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79988243 chr17:79988245 synonymous SNV . 0 23 hm5C_associated_SNPs_93940 0 0 1 0 2 LRRC45 chr17:79988342 5'GT 79988342 Upstream 98bp
chr17 38032990 38032990 1 + C T COAD 38032987 + 38032967 38033007 41 GTTAATGTAACTTGTCAGACCTGCGTTTCCGTCCTTACCTA GTTAATGTAACTTGTCAGACCTGTGTTTCCGTCCTTACCTA < 41bp 0.753834126285516 0.548460736382654 0.13114259 0.08531159 prediction 0.410746779805724 Functional Loss - ZPBP2 ENSG00000186075 CDS Human protein_coding chr17:38032987 chr17:38032990 synonymous SNV . 0 24 hm5C_associated_SNPs_93943 0 0 0 0 1 ZPBP2 chr17:38032935 3'AG 38032935 Downstream 56bp
chrX 47041673 47041673 1 + C T OV 47041671 + 47041651 47041691 41 CATAAGGAGACAGGGGCACCCTCGAAGGAGGGCAAAGAGAA CATAAGGAGACAGGGGCACCCTTGAAGGAGGGCAAAGAGAA < 41bp 0.87565965545495 0.670291974807708 0.87338674 0.211846 prediction 0.410735361294485 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47041671 chrX:47041673 nonsynonymous SNV 0.987 0 23 hm5C_associated_SNPs_93946 0 0 1 0 1 RBM10 chrX:47041725 5'GT 47041725 Upstream 53bp
chr9 95872910 95872910 1 + C T UCEC 95872907 + 95872887 95872927 41 GTGACCTCCTGAGCCACCTGCAGCGGAGCGGTGAGCGGGAC GTGACCTCCTGAGCCACCTGCAGTGGAGCGGTGAGCGGGAC < 41bp 0.716239376036735 0.510875346134577 0.863324 0.7682801 prediction 0.410728059804316 Functional Loss - CARD19 ENSG00000165233 CDS Human protein_coding chr9:95872907 chr9:95872910 nonsynonymous SNV 0.493 2 24 hm5C_associated_SNPs_93950 0 0 0 0 2 CARD19 chr9:95872850 3'AG 95872850 Downstream 61bp
chr9 95872910 95872910 1 + C T UCEC 95872907 + 95872887 95872927 41 GTGACCTCCTGAGCCACCTGCAGCGGAGCGGTGAGCGGGAC GTGACCTCCTGAGCCACCTGCAGTGGAGCGGTGAGCGGGAC < 41bp 0.716239376036735 0.510875346134577 0.863324 0.7682801 prediction 0.410728059804316 Functional Loss - CARD19 ENSG00000165233 CDS Human protein_coding chr9:95872907 chr9:95872910 nonsynonymous SNV 0.493 2 24 hm5C_associated_SNPs_93950 0 0 0 0 2 CARD19 chr9:95873003 5'GT 95873003 Upstream 94bp
chr14 103574849 103574849 1 + C T LUSC 103574846 + 103574826 103574866 41 ACTCTTATCCGGAGCTACCCCGACATCAGGTGTGTACCCCA ACTCTTATCCGGAGCTACCCCGATATCAGGTGTGTACCCCA < 41bp 0.740909759512175 0.53554823395344 0.24672228 0.097668886 prediction 0.41072305111747 Functional Loss - EXOC3L4 ENSG00000205436 CDS Human protein_coding chr14:103574846 chr14:103574849 synonymous SNV . 0 24 hm5C_associated_SNPs_93951 0 0 1 0 1 EXOC3L4 chr14:103574854 5'GT 103574854 Upstream 6bp
chr17 57043102 57043102 1 + G A COAD 57043099 + 57043079 57043119 41 GTTCTGTCTTCAGCAAACTACACGAGATTTGCTGCAGCTGG GTTCTGTCTTCAGCAAACTACACAAGATTTGCTGCAGCTGG < 41bp 0.784327786903088 0.578966453640433 0.41304746 0.17289132 prediction 0.41072266652531 Functional Loss - PPM1E ENSG00000175175 CDS Human protein_coding chr17:57043099 chr17:57043102 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_93952 0 0 0 0 1 PPM1E chr17:57043055 3'AG 57043055 Downstream 48bp
chr1 213134593 213134593 1 + T C UCEC 213134592 + 213134572 213134612 41 TCCAGAATTACATGAAGACCCTACAGTATCCTTCCAACCAA TCCAGAATTACATGAAGACCCCACAGTATCCTTCCAACCAA < 41bp 0.85312467677533 0.647764012544454 0.879444 0.097700894 prediction 0.410721328461751 Functional Loss - VASH2 ENSG00000143494 CDS Human protein_coding chr1:213134592 chr1:213134593 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_93953 0 0 0 0 2 VASH2 chr1:213134508 3'AG 213134508 Downstream 86bp
chr1 213134593 213134593 1 + T C UCEC 213134592 + 213134572 213134612 41 TCCAGAATTACATGAAGACCCTACAGTATCCTTCCAACCAA TCCAGAATTACATGAAGACCCCACAGTATCCTTCCAACCAA < 41bp 0.85312467677533 0.647764012544454 0.879444 0.097700894 prediction 0.410721328461751 Functional Loss - VASH2 ENSG00000143494 CDS Human protein_coding chr1:213134592 chr1:213134593 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_93953 0 0 0 0 2 VASH2 chr1:213134596 5'GT 213134596 Upstream 4bp
chr15 75942574 75942574 1 + C T rs541938761 75942572 + 75942552 75942592 41 ACTTGCAGGACGTGGAAGATCGCGTGGACACTTTCAAGGCC ACTTGCAGGACGTGGAAGATCGTGTGGACACTTTCAAGGCC < 41bp 0.843352084910753 0.637994208280102 0.55605066 0.3614015 prediction 0.410715753261301 Functional Loss - SNX33 ENSG00000173548 CDS Human protein_coding chr15:75942572 chr15:75942574 synonymous SNV . 0 23 hm5C_associated_SNPs_93954 0 0 0 0 1 SNX33 chr15:75942649 5'GT 75942649 Upstream 76bp
chr2 231334780 231334780 1 + G A UCEC 231334777 + 231334757 231334797 41 TGAGTAATGGAGAAGAGCTTCAGGAAACCTGCAGCTCATCC TGAGTAATGGAGAAGAGCTTCAGAAAACCTGCAGCTCATCC < 41bp 0.779927353238051 0.574571984914243 0.67363536 0.36991382 prediction 0.410710736647615 Functional Loss - SP100 ENSG00000067066 CDS Human protein_coding chr2:231334777 chr2:231334780 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_93957 0 0 1 0 2 SP100 chr2:231334730 3'AG 231334730 Downstream 51bp
chr2 231334780 231334780 1 + G A UCEC 231334777 + 231334757 231334797 41 TGAGTAATGGAGAAGAGCTTCAGGAAACCTGCAGCTCATCC TGAGTAATGGAGAAGAGCTTCAGAAAACCTGCAGCTCATCC < 41bp 0.779927353238051 0.574571984914243 0.67363536 0.36991382 prediction 0.410710736647615 Functional Loss - SP100 ENSG00000067066 CDS Human protein_coding chr2:231334777 chr2:231334780 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_93957 0 0 1 0 2 SP100 chr2:231334813 5'GT 231334813 Upstream 34bp
chr14 64921543 64921543 1 + G A LUSC 64921540 + 64921520 64921560 41 CAGGCTTCATTCTGCCCATTCGCGACATCCGCGCCAGCGTT CAGGCTTCATTCTGCCCATTCGCAACATCCGCGCCAGCGTT < 41bp 0.835082032167667 0.629726678938369 0.5624743 0.19542313 prediction 0.410710706458596 Functional Loss - MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64921540 chr14:64921543 nonsynonymous SNV 0.304 3 24 hm5C_associated_SNPs_93958 0 0 1 0 1 MTHFD1 chr14:64921593 5'GT 64921593 Upstream 51bp
chr8 121326189 121326189 1 + G A SKCM 121326186 + 121326166 121326206 41 TCCAGGGACCAGATGGCCCTCGGGGTGAAATTGGTCTGCCA TCCAGGGACCAGATGGCCCTCGGAGTGAAATTGGTCTGCCA < 41bp 0.784829180045656 0.57947454241627 0.93491876 0.9073894 prediction 0.410709275258771 Functional Loss - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121326186 chr8:121326189 nonsynonymous SNV 0.914 5 24 hm5C_associated_SNPs_93960 0 0 0 0 2 COL14A1 chr8:121326171 3'AG 121326171 Downstream 19bp
chr8 121326189 121326189 1 + G A SKCM 121326186 + 121326166 121326206 41 TCCAGGGACCAGATGGCCCTCGGGGTGAAATTGGTCTGCCA TCCAGGGACCAGATGGCCCTCGGAGTGAAATTGGTCTGCCA < 41bp 0.784829180045656 0.57947454241627 0.93491876 0.9073894 prediction 0.410709275258771 Functional Loss - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121326186 chr8:121326189 nonsynonymous SNV 0.914 5 24 hm5C_associated_SNPs_93960 0 0 0 0 2 COL14A1 chr8:121326266 5'GT 121326266 Upstream 78bp
chr6 4041056 4041056 1 + G A UCEC 4041053 + 4041033 4041073 41 CTTGCGAAGGCGGTCTCGATCACGCGGTGGTCGTAGACGAA CTTGCGAAGGCGGTCTCGATCACACGGTGGTCGTAGACGAA < 41bp 0.705354269389689 0.463112966126907 0.53387886 0.26038495 prediction 0.410708538779379 Functional Loss - PRPF4B ENSG00000112739 CDS Human protein_coding chr6:4041053 chr6:4041056 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_93962 0 0 1 0 1 PRPF4B chr6:4041006 3'AG 4041006 Downstream 51bp
chr11 93088705 93088705 1 + A T SKCM 93088703 + 93088683 93088723 41 CTTGTTTGGATCAGAAAGGTCAAGAGGTACTGAATACATAT CTTGTTTGGATCAGAAAGGTCATGAGGTACTGAATACATAT < 41bp 0.705354155222207 0.49948166943156 0.34700835 0.15836552 prediction 0.410708310444413 Functional Loss - DEUP1 ENSG00000165325 CDS Human protein_coding chr11:93088703 chr11:93088705 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_93963 0 0 0 0 1 DEUP1 chr11:93088708 5'GT 93088708 Upstream 4bp
chr16 2258767 2258767 1 + G A rs11863256 2258764 + 2258744 2258784 41 CAATCTCCCCCTCCAGCTTCCTCGGACAACCTGGCCCGGCT CAATCTCCCCCTCCAGCTTCCTCAGACAACCTGGCCCGGCT < 41bp 0.705353902730452 0.467007477979152 0.7916135 0.21144754 prediction 0.410707805460903 Functional Loss - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2258764 chr16:2258767 synonymous SNV . 0 24 hm5C_associated_SNPs_93964 0 0 1 0 1 MLST8 chr16:2258760 3'AG 2258760 Downstream 8bp
chr18 10485731 10485731 1 + C T UCEC 10485729 + 10485709 10485749 41 ACGCCCGGGGCCGCTACAGCCGCGGCGTCCTCTCGTCCAGG ACGCCCGGGGCCGCTACAGCCGTGGCGTCCTCTCGTCCAGG < 41bp 0.847131356161606 0.641777715601587 0.93425894 0.9187094 prediction 0.410707281120038 Functional Loss - APCDD1 ENSG00000154856 CDS Human protein_coding chr18:10485729 chr18:10485731 synonymous SNV . 0 23 hm5C_associated_SNPs_93965 0 0 0 0 1 APCDD1 chr18:10485780 5'GT 10485780 Upstream 50bp
chrX 153492789 153492789 1 + G T BRCA 153492785 + 153492765 153492805 41 GGCATTGCCTTCTCCTGGATCTGGGCTGCTGTGTGGACAGC GGCATTGCCTTCTCCTGGATCTGGTCTGCTGTGTGGACAGC < 41bp 0.770578283052134 0.56522601166637 0.49935037 0.0886887 prediction 0.410704542771528 Functional Loss - OPN1MW;OPN1MW2;OPN1MW3 ENSG00000166160 CDS Human protein_coding chrX:153492785 chrX:153492789 nonsynonymous SNV 0.018 0 25 hm5C_associated_SNPs_93966 0 0 0 0 1 OPN1MW;OPN1MW2;OPN1MW3 chrX:153492829 5'GT 153492829 Upstream 41bp
chr5 6750547 6750547 1 + G T LUSC 6750543 + 6750523 6750563 41 TGGCCAGCGCTTGACTTTGTCGCTGTCCAGCCCCCAGCTCC TGGCCAGCGCTTGACTTTGTCGCTTTCCAGCCCCCAGCTCC < 41bp 0.70534885371775 0.498675948176686 0.3771028 0.21056387 prediction 0.4106977074355 Functional Loss - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6750543 chr5:6750547 synonymous SNV . 0 25 hm5C_associated_SNPs_93967 0 0 1 0 1 PAPD7 chr5:6750616 5'GT 6750616 Upstream 70bp
chr1 10479692 10479692 1 + G T SARC 10479690 + 10479670 10479710 41 ACTCTCTCGTTTCCTAGGCTCAGCGGGATTACTTCGGGGCT ACTCTCTCGTTTCCTAGGCTCATCGGGATTACTTCGGGGCT < 41bp 0.705348230204303 0.357657833400935 0.8765829 0.29951733 prediction 0.410696460408605 Functional Loss - PGD ENSG00000142657 CDS Human protein_coding chr1:10479690 chr1:10479692 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_93968 0 0 1 0 1 PGD chr1:10479687 3'AG 10479687 Downstream 6bp
chr12 49936527 49936527 1 + G T COAD 49936523 + 49936503 49936543 41 CGATATGGCCGGGCACGATCCAAAGGCTTCAATGCCAACCG CGATATGGCCGGGCACGATCCAAATGCTTCAATGCCAACCG < 41bp 0.713374356268512 0.508031318793954 0.3088485 0.22410378 prediction 0.410686074949115 Functional Loss - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49936523 chr12:49936527 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_93970 0 0 0 0 2 KCNH3 chr12:49936489 3'AG 49936489 Downstream 39bp
chr12 49936527 49936527 1 + G T COAD 49936523 + 49936503 49936543 41 CGATATGGCCGGGCACGATCCAAAGGCTTCAATGCCAACCG CGATATGGCCGGGCACGATCCAAATGCTTCAATGCCAACCG < 41bp 0.713374356268512 0.508031318793954 0.3088485 0.22410378 prediction 0.410686074949115 Functional Loss - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49936523 chr12:49936527 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_93970 0 0 0 0 2 KCNH3 chr12:49936622 5'GT 49936622 Upstream 96bp
chr12 58015503 58015503 1 + C T BLCA 58015501 + 58015481 58015521 41 CTCCTTGCTGACTGCGCTGCCTCGGAGCAGTCCGGCCGAAC CTCCTTGCTGACTGCGCTGCCTTGGAGCAGTCCGGCCGAAC < 41bp 0.861170253384731 0.655829382789579 0.19422495 0.07024798 prediction 0.410681741190302 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58015501 chr12:58015503 nonsynonymous SNV 0.201 2 23 hm5C_associated_SNPs_93971 0 0 0 0 1 SLC26A10 chr12:58015473 3'AG 58015473 Downstream 31bp
chr12 6494249 6494249 1 + G A UCEC 6494246 + 6494226 6494266 41 ACAGTTTGTGCCACATGTGCCGAGAATTCCTACAACGAGCA ACAGTTTGTGCCACATGTGCCGAAAATTCCTACAACGAGCA < 41bp 0.705338455175393 0.452575658948254 0.028268605 0.004633516 prediction 0.410676910350786 Functional Loss - LTBR ENSG00000111321 CDS Human protein_coding chr12:6494246 chr12:6494249 synonymous SNV . 0 24 hm5C_associated_SNPs_93973 0 0 1 0 3 LTBR chr12:6494188 3'AG 6494188 Downstream 62bp
chr12 6494249 6494249 1 + G A UCEC 6494246 + 6494226 6494266 41 ACAGTTTGTGCCACATGTGCCGAGAATTCCTACAACGAGCA ACAGTTTGTGCCACATGTGCCGAAAATTCCTACAACGAGCA < 41bp 0.705338455175393 0.452575658948254 0.028268605 0.004633516 prediction 0.410676910350786 Functional Loss - LTBR ENSG00000111321 CDS Human protein_coding chr12:6494246 chr12:6494249 synonymous SNV . 0 24 hm5C_associated_SNPs_93973 0 0 1 0 3 LTBR chr12:6494203 3'AG 6494203 Downstream 47bp
chr12 6494249 6494249 1 + G A UCEC 6494246 + 6494226 6494266 41 ACAGTTTGTGCCACATGTGCCGAGAATTCCTACAACGAGCA ACAGTTTGTGCCACATGTGCCGAAAATTCCTACAACGAGCA < 41bp 0.705338455175393 0.452575658948254 0.028268605 0.004633516 prediction 0.410676910350786 Functional Loss - LTBR ENSG00000111321 CDS Human protein_coding chr12:6494246 chr12:6494249 synonymous SNV . 0 24 hm5C_associated_SNPs_93973 0 0 1 0 3 LTBR chr12:6494313 5'GT 6494313 Upstream 65bp
chr10 94834559 94834559 1 + C T COAD 94834556 + 94834536 94834576 41 GTGATTATGCGGGCCTTCAGCCGCGAGGCACTCGAATGCTA GTGATTATGCGGGCCTTCAGCCGTGAGGCACTCGAATGCTA < 41bp 0.731933883874289 0.526595431347191 0.3531121 0.21351588 prediction 0.410676905054196 Functional Loss - CYP26A1 ENSG00000095596 CDS Human protein_coding chr10:94834556 chr10:94834559 synonymous SNV . 0 24 hm5C_associated_SNPs_93974 0 0 0 0 1 CYP26A1 chr10:94834536 3'AG 94834536 Downstream 24bp
chr3 50231062 50231062 1 + G A STAD 50231059 + 50231039 50231079 41 GTATCCAGGCCTGTTTTGAGCGCGCCTCGGAGTACCAGCTC GTATCCAGGCCTGTTTTGAGCGCACCTCGGAGTACCAGCTC < 41bp 0.829404659877713 0.624069722357098 0.11685744 0.053081483 prediction 0.41066987504123 Functional Loss - GNAT1 ENSG00000114349 CDS Human protein_coding chr3:50231059 chr3:50231062 nonsynonymous SNV 0.978 4 24 hm5C_associated_SNPs_93977 0 0 0 0 1 GNAT1 chr3:50231096 5'GT 50231096 Upstream 35bp
chr3 132050506 132050506 1 + C T PRAD 132050503 + 132050483 132050523 41 TCCCATAGCTGGGCATGGAGCAGCATTATGAACTTGGAGAG TCCCATAGCTGGGCATGGAGCAGTATTATGAACTTGGAGAG < 41bp 0.736414738983785 0.531080220362413 0.09887928 0.16877797 prediction 0.410669037242744 Functional Loss - ACPP ENSG00000014257 CDS Human protein_coding chr3:132050503 chr3:132050506 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_93979 0 0 0 0 1 ACPP chr3:132050491 3'AG 132050491 Downstream 16bp
chr3 45527276 45527276 1 + G A UCEC 45527273 + 45527253 45527293 41 AAGCTGACTTGGAAGGCTCTCTGGATTCAAAAATAGGTAAG AAGCTGACTTGGAAGGCTCTCTGAATTCAAAAATAGGTAAG < 41bp 0.804277112891353 0.598943335937957 0.7368735 0.37552077 prediction 0.410667553906791 Functional Loss - LARS2 ENSG00000011376 CDS Human protein_coding chr3:45527273 chr3:45527276 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_93980 0 0 0 0 2 LARS2 chr3:45527184 3'AG 45527184 Downstream 93bp
chr3 45527276 45527276 1 + G A UCEC 45527273 + 45527253 45527293 41 AAGCTGACTTGGAAGGCTCTCTGGATTCAAAAATAGGTAAG AAGCTGACTTGGAAGGCTCTCTGAATTCAAAAATAGGTAAG < 41bp 0.804277112891353 0.598943335937957 0.7368735 0.37552077 prediction 0.410667553906791 Functional Loss - LARS2 ENSG00000011376 CDS Human protein_coding chr3:45527273 chr3:45527276 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_93980 0 0 0 0 2 LARS2 chr3:45527288 5'GT 45527288 Upstream 13bp
chr2 69207077 69207077 1 + C T UCEC 69207075 + 69207055 69207095 41 AGGGACCAGGAGGACCACCTCCCAAGGGCCTGATGTACTCA AGGGACCAGGAGGACCACCTCCTAAGGGCCTGATGTACTCA < 41bp 0.705333626710712 0.414459544789078 0.08497581 0.08541891 prediction 0.410667253421423 Functional Loss - GKN1 ENSG00000169605 CDS Human protein_coding chr2:69207075 chr2:69207077 synonymous SNV . 0 23 hm5C_associated_SNPs_93981 0 0 0 0 1 GKN1 chr2:69207045 3'AG 69207045 Downstream 33bp
chr15 49620200 49620200 1 + C T rs1055254 49620197 + 49620177 49620217 41 ACTGGAGCAGGATGGGGAGGCTGCACAGTATCAATGGTACC ACTGGAGCAGGATGGGGAGGCTGTACAGTATCAATGGTACC < 41bp 0.752747062351058 0.547415367734389 0.6310405 0.598438 prediction 0.410663389233337 Functional Loss - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49620197 chr15:49620200 synonymous SNV . 0 24 hm5C_associated_SNPs_93982 0 0 1 0 1 GALK2 chr15:49620149 3'AG 49620149 Downstream 52bp
chr7 128370003 128370003 1 + C T GBM 128370000 + 128369980 128370020 41 GCATCCCTTGCACCTGTGACCTACGTTGGAGGGCTTCATTC GCATCCCTTGCACCTGTGACCTATGTTGGAGGGCTTCATTC < 41bp 0.705329271511645 0.482814844706982 0.051100165 0.029940277 prediction 0.41065854302329 Functional Loss - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128370000 chr7:128370003 nonsynonymous SNV 0.083 0 24 hm5C_associated_SNPs_93985 0 0 0 0 1 FAM71F1 chr7:128369956 3'AG 128369956 Downstream 48bp
chr1 47283692 47283692 1 + C T LGG 47283690 + 47283670 47283710 41 ATAGGAACAGTGCTGTATGGCCCGACCCTGAGGTACCCTTT ATAGGAACAGTGCTGTATGGCCTGACCCTGAGGTACCCTTT < 41bp 0.705325876680169 0.433475324250184 0.009365588 0.008867711 prediction 0.410651753360337 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47283690 chr1:47283692 synonymous SNV . 0 23 hm5C_associated_SNPs_93988 0 0 0 0 2 CYP4B1 chr1:47283637 3'AG 47283637 Downstream 56bp
chr1 47283692 47283692 1 + C T LGG 47283690 + 47283670 47283710 41 ATAGGAACAGTGCTGTATGGCCCGACCCTGAGGTACCCTTT ATAGGAACAGTGCTGTATGGCCTGACCCTGAGGTACCCTTT < 41bp 0.705325876680169 0.433475324250184 0.009365588 0.008867711 prediction 0.410651753360337 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47283690 chr1:47283692 synonymous SNV . 0 23 hm5C_associated_SNPs_93988 0 0 0 0 2 CYP4B1 chr1:47283701 5'GT 47283701 Upstream 10bp
chr9 136302909 136302909 1 + G A SKCM 136302906 + 136302886 136302926 41 CACATGTGCCGGGCCATTGGCGAGAGCTTCATCATGAAGCG CACATGTGCCGGGCCATTGGCGAAAGCTTCATCATGAAGCG < 41bp 0.794864983068634 0.589539878281359 0.39733076 0.14167267 prediction 0.410650209574551 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136302906 chr9:136302909 synonymous SNV . 0 24 hm5C_associated_SNPs_93989 0 0 0 1 1 ADAMTS13 chr9:136302869 3'AG 136302869 Downstream 41bp
chr12 49888776 49888776 1 + G A rs151243398 49888773 + 49888753 49888793 41 AGTCTGCCATGCTAGATACGCTGGATAGAACAGGTGAGTTT AGTCTGCCATGCTAGATACGCTGAATAGAACAGGTGAGTTT < 41bp 0.799172264306719 0.593847264278412 0.5440843 0.18788394 prediction 0.410650000056614 Functional Loss - SPATS2 ENSG00000123352 CDS Human protein_coding chr12:49888773 chr12:49888776 nonsynonymous SNV 0.331 1 24 hm5C_associated_SNPs_93990 0 0 1 2 1 SPATS2 chr12:49888785 5'GT 49888785 Upstream 10bp
chrX 154327638 154327638 1 + C T UCEC 154327635 + 154327615 154327655 41 TGGAGCTCCAGCCAGCACATCTCCATTGAGGGCCAGAAGGA TGGAGCTCCAGCCAGCACATCTCTATTGAGGGCCAGAAGGA < 41bp 0.803977696245459 0.59865309470205 0.95731705 0.91852677 prediction 0.410649203086817 Functional Loss - BRCC3 ENSG00000185515 CDS Human protein_coding chrX:154327635 chrX:154327638 synonymous SNV . 0 24 hm5C_associated_SNPs_93991 0 0 0 0 2 BRCC3 chrX:154327590 3'AG 154327590 Downstream 49bp
chrX 154327638 154327638 1 + C T UCEC 154327635 + 154327615 154327655 41 TGGAGCTCCAGCCAGCACATCTCCATTGAGGGCCAGAAGGA TGGAGCTCCAGCCAGCACATCTCTATTGAGGGCCAGAAGGA < 41bp 0.803977696245459 0.59865309470205 0.95731705 0.91852677 prediction 0.410649203086817 Functional Loss - BRCC3 ENSG00000185515 CDS Human protein_coding chrX:154327635 chrX:154327638 synonymous SNV . 0 24 hm5C_associated_SNPs_93991 0 0 0 0 2 BRCC3 chrX:154327664 5'GT 154327664 Upstream 27bp
chr5 175722114 175722114 1 + G T UCEC 175722111 + 175722091 175722131 41 CCATTGAAGAGAATTTTCCTCTGGGGACTGTGCAGTTTTTG CCATTGAAGAGAATTTTCCTCTGTGGACTGTGCAGTTTTTG < 41bp 0.705317298236152 0.312449684367899 0.23129246 0.09330979 prediction 0.410634596472303 Functional Loss - SIMC1 ENSG00000170085 CDS Human protein_coding chr5:175722111 chr5:175722114 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_93997 0 0 1 0 1 SIMC1 chr5:175722033 3'AG 175722033 Downstream 82bp
chr11 77860071 77860071 1 + C T rs149501133 77860069 + 77860049 77860089 41 GTTCAGTGGCACGATCTCCGCTCGCTGCAACCTCCGCCTCC GTTCAGTGGCACGATCTCCGCTTGCTGCAACCTCCGCCTCC < 41bp 0.705316667356381 0.480063567115506 0.29820275 0.2085965 prediction 0.410633334712762 Functional Loss - KCTD21-AS1 ENSG00000246174 ncRNA_exonic Human antisense chr11:77860069 chr11:77860071 . . 0 23 hm5C_associated_SNPs_93998 0 0 0 0 1 KCTD21-AS1 chr11:77860139 5'GT 77860139 Upstream 69bp
chr1 223165415 223165415 1 + G A SKCM 223165412 + 223165392 223165432 41 AGAGAGAAAAGAGAAGTTGACTGGAACTTCCACAAGGACAG AGAGAGAAAAGAGAAGTTGACTGAAACTTCCACAAGGACAG < 41bp 0.768765612689941 0.56345234909061 0.17096055 0.16346106 prediction 0.410626527198662 Functional Loss - DISP1 ENSG00000154309 CDS Human protein_coding chr1:223165412 chr1:223165415 stopgain 1.000 1 24 hm5C_associated_SNPs_94001 0 0 0 0 2 DISP1 chr1:223165355 3'AG 223165355 Downstream 61bp
chr1 223165415 223165415 1 + G A SKCM 223165412 + 223165392 223165432 41 AGAGAGAAAAGAGAAGTTGACTGGAACTTCCACAAGGACAG AGAGAGAAAAGAGAAGTTGACTGAAACTTCCACAAGGACAG < 41bp 0.768765612689941 0.56345234909061 0.17096055 0.16346106 prediction 0.410626527198662 Functional Loss - DISP1 ENSG00000154309 CDS Human protein_coding chr1:223165412 chr1:223165415 stopgain 1.000 1 24 hm5C_associated_SNPs_94001 0 0 0 0 2 DISP1 chr1:223165452 5'GT 223165452 Upstream 38bp
chr17 42926676 42926676 1 + G A COAD 42926673 + 42926653 42926693 41 CAGGATTTACCGGCTGAGGTCTCGTGGTTCCACCAAGATGT CAGGATTTACCGGCTGAGGTCTCATGGTTCCACCAAGATGT < 41bp 0.705310146795742 0.44798766975726 0.215725 0.15455815 prediction 0.410620293591484 Functional Loss - HIGD1B ENSG00000131097 CDS Human protein_coding chr17:42926673 chr17:42926676 nonsynonymous SNV 0.590 4 24 hm5C_associated_SNPs_94004 0 0 0 0 2 HIGD1B chr17:42926622 3'AG 42926622 Downstream 55bp
chr17 42926676 42926676 1 + G A COAD 42926673 + 42926653 42926693 41 CAGGATTTACCGGCTGAGGTCTCGTGGTTCCACCAAGATGT CAGGATTTACCGGCTGAGGTCTCATGGTTCCACCAAGATGT < 41bp 0.705310146795742 0.44798766975726 0.215725 0.15455815 prediction 0.410620293591484 Functional Loss - HIGD1B ENSG00000131097 CDS Human protein_coding chr17:42926673 chr17:42926676 nonsynonymous SNV 0.590 4 24 hm5C_associated_SNPs_94004 0 0 0 0 2 HIGD1B chr17:42926756 5'GT 42926756 Upstream 81bp
chr9 17298312 17298312 1 + G T LUAD 17298309 + 17298289 17298329 41 CACAAAAAGTACTGAGAAATCAGGAAGATGTTCACACAGCT CACAAAAAGTACTGAGAAATCAGTAAGATGTTCACACAGCT < 41bp 0.705308985366826 0.347359388611966 0.8813168 0.3370853 prediction 0.410617970733653 Functional Loss - CNTLN ENSG00000044459 CDS Human protein_coding chr9:17298309 chr9:17298312 stopgain 1.000 0 24 hm5C_associated_SNPs_94006 0 0 1 0 1 CNTLN chr9:17298350 5'GT 17298350 Upstream 39bp
chr7 133821833 133821833 1 + G T LUAD 133821829 + 133821809 133821849 41 GTGGCCAAAGCACTCCATCACTTGGGGCGCTCAGGCTCTGG GTGGCCAAAGCACTCCATCACTTGTGGCGCTCAGGCTCTGG < 41bp 0.705307491262069 0.48619505859057 0.11828914 0.03833121 prediction 0.410614982524138 Functional Loss - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133821829 chr7:133821833 nonsynonymous SNV 0.906 4 25 hm5C_associated_SNPs_94007 0 0 0 0 2 LRGUK chr7:133821776 3'AG 133821776 Downstream 58bp
chr7 133821833 133821833 1 + G T LUAD 133821829 + 133821809 133821849 41 GTGGCCAAAGCACTCCATCACTTGGGGCGCTCAGGCTCTGG GTGGCCAAAGCACTCCATCACTTGTGGCGCTCAGGCTCTGG < 41bp 0.705307491262069 0.48619505859057 0.11828914 0.03833121 prediction 0.410614982524138 Functional Loss - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133821829 chr7:133821833 nonsynonymous SNV 0.906 4 25 hm5C_associated_SNPs_94007 0 0 0 0 2 LRGUK chr7:133821883 5'GT 133821883 Upstream 51bp
chr1 168153312 168153312 1 + G A READ 168153309 + 168153289 168153329 41 TGGCCTGTGCTGAAGAGTGGCAAGAAAGCAGGTGAGAATCC TGGCCTGTGCTGAAGAGTGGCAAAAAAGCAGGTGAGAATCC < 41bp 0.768039786002611 0.562733699410123 0.51924336 0.18422139 prediction 0.410612173184976 Functional Loss - TIPRL ENSG00000143155 CDS Human protein_coding chr1:168153309 chr1:168153312 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_94011 0 0 1 0 1 TIPRL chr1:168153319 5'GT 168153319 Upstream 8bp
chr4 187073101 187073101 1 + G T LUAD 187073098 + 187073078 187073118 41 CAGTCAGTGCAGCGGTTACTCTGGGAGGTGGAGGAAATGTT CAGTCAGTGCAGCGGTTACTCTGTGAGGTGGAGGAAATGTT < 41bp 0.70530490313745 0.429694999276652 0.41309378 0.069358826 prediction 0.410609806274899 Functional Loss - FAM149A ENSG00000109794 CDS Human protein_coding chr4:187073098 chr4:187073101 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_94012 0 0 0 0 1 FAM149A chr4:187073199 5'GT 187073199 Upstream 99bp
chr6 148855979 148855979 1 + G A LUSC 148855976 + 148855956 148855996 41 GACTTGGATGAGTTAAATATCAGGGACCCGGAACACAGAGC GACTTGGATGAGTTAAATATCAGAGACCCGGAACACAGAGC < 41bp 0.705300778878697 0.463529133711478 0.9330061 0.9157764 prediction 0.410601557757394 Functional Loss - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148855976 chr6:148855979 synonymous SNV . 0 24 hm5C_associated_SNPs_94014 0 0 1 0 2 SASH1 chr6:148855887 3'AG 148855887 Downstream 93bp
chr6 148855979 148855979 1 + G A LUSC 148855976 + 148855956 148855996 41 GACTTGGATGAGTTAAATATCAGGGACCCGGAACACAGAGC GACTTGGATGAGTTAAATATCAGAGACCCGGAACACAGAGC < 41bp 0.705300778878697 0.463529133711478 0.9330061 0.9157764 prediction 0.410601557757394 Functional Loss - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148855976 chr6:148855979 synonymous SNV . 0 24 hm5C_associated_SNPs_94014 0 0 1 0 2 SASH1 chr6:148856037 5'GT 148856037 Upstream 59bp
chr2 33752259 33752259 1 + G T LUSC 33752257 + 33752237 33752277 41 AACGGCAATTACTGCAATTACCGCAAGGCCTTTGCCGACTG AACGGCAATTACTGCAATTACCTCAAGGCCTTTGCCGACTG < 41bp 0.705299806533029 0.369479533172409 0.09154326 0.10091242 prediction 0.410599613066058 Functional Loss - RASGRP3 ENSG00000152689 CDS Human protein_coding chr2:33752257 chr2:33752259 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_94016 0 0 0 0 1 RASGRP3 chr2:33752204 3'AG 33752204 Downstream 56bp
chr15 25475870 25475870 1 + G A rs139045618 25475867 + 25475847 25475887 41 CTGGGCCAGTGTCCATCAGCCAGGTGCTCAGCCCCAGTGCA CTGGGCCAGTGTCCATCAGCCAGATGCTCAGCCCCAGTGCA < 41bp 0.705297750233564 0.468857309657339 0.9362656 0.9235235 prediction 0.410595500467128 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25475867 chr15:25475870 . . 0 24 hm5C_associated_SNPs_94017 0 0 0 0 2 SNHG14 chr15:25475817 3'AG 25475817 Downstream 54bp
chr15 25475870 25475870 1 + G A rs139045618 25475867 + 25475847 25475887 41 CTGGGCCAGTGTCCATCAGCCAGGTGCTCAGCCCCAGTGCA CTGGGCCAGTGTCCATCAGCCAGATGCTCAGCCCCAGTGCA < 41bp 0.705297750233564 0.468857309657339 0.9362656 0.9235235 prediction 0.410595500467128 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25475867 chr15:25475870 . . 0 24 hm5C_associated_SNPs_94017 0 0 0 0 2 SNHG14 chr15:25475928 5'GT 25475928 Upstream 59bp
chr18 55402735 55402735 1 + A C rs542045688 55402734 + 55402714 55402754 41 AAGAACCCCAGGTCAGAGAACACGAGGCTTGCCACCATCTT AAGAACCCCAGGTCAGAGAACCCGAGGCTTGCCACCATCTT < 41bp 0.705294376516516 0.462030816369123 0.42240372 0.48083356 prediction 0.410588753033031 Functional Loss - ATP8B1 ENSG00000267040;ENSG00000267787 ncRNA_exonic Human other chr18:55402734 chr18:55402735 . . 0 22 hm5C_associated_SNPs_94021 0 0 0 0 1 ATP8B1 chr18:55402824 5'GT 55402824 Upstream 90bp
chr14 103599776 103599776 1 + G A SKCM 103599773 + 103599753 103599793 41 AGCAAGGGGCGCCTGGTCCTCAAGACGGCCGAGCAGCAGCA AGCAAGGGGCGCCTGGTCCTCAAAACGGCCGAGCAGCAGCA < 41bp 0.826280509364395 0.620986537919445 0.5340809 0.3624704 prediction 0.410587942889901 Functional Loss - TNFAIP2 ENSG00000185215 CDS Human protein_coding chr14:103599773 chr14:103599776 synonymous SNV . 0 24 hm5C_associated_SNPs_94022 0 0 1 0 2 TNFAIP2 chr14:103599699 3'AG 103599699 Downstream 78bp
chr14 103599776 103599776 1 + G A SKCM 103599773 + 103599753 103599793 41 AGCAAGGGGCGCCTGGTCCTCAAGACGGCCGAGCAGCAGCA AGCAAGGGGCGCCTGGTCCTCAAAACGGCCGAGCAGCAGCA < 41bp 0.826280509364395 0.620986537919445 0.5340809 0.3624704 prediction 0.410587942889901 Functional Loss - TNFAIP2 ENSG00000185215 CDS Human protein_coding chr14:103599773 chr14:103599776 synonymous SNV . 0 24 hm5C_associated_SNPs_94022 0 0 1 0 2 TNFAIP2 chr14:103599854 5'GT 103599854 Upstream 79bp
chr3 48423544 48423544 1 + G T BLCA 48423541 + 48423521 48423561 41 ACCTCAGGAGCTGCTGTCACCTGGAAAACACGTGGCATGAT ACCTCAGGAGCTGCTGTCACCTGTAAAACACGTGGCATGAT < 41bp 0.935618183953092 0.730327151362175 0.4048577 0.14324138 prediction 0.410582065181835 Functional Loss - FBXW12 ENSG00000164049 CDS Human protein_coding chr3:48423541 chr3:48423544 stopgain 0.005 0 24 hm5C_associated_SNPs_94026 0 0 0 0 2 FBXW12 chr3:48423445 3'AG 48423445 Downstream 100bp
chr3 48423544 48423544 1 + G T BLCA 48423541 + 48423521 48423561 41 ACCTCAGGAGCTGCTGTCACCTGGAAAACACGTGGCATGAT ACCTCAGGAGCTGCTGTCACCTGTAAAACACGTGGCATGAT < 41bp 0.935618183953092 0.730327151362175 0.4048577 0.14324138 prediction 0.410582065181835 Functional Loss - FBXW12 ENSG00000164049 CDS Human protein_coding chr3:48423541 chr3:48423544 stopgain 0.005 0 24 hm5C_associated_SNPs_94026 0 0 0 0 2 FBXW12 chr3:48423575 5'GT 48423575 Upstream 32bp
chr1 40432551 40432551 1 + G A BLCA 40432548 + 40432528 40432568 41 GCCTACGGCTGGTCATGAGCCACGGCCCATACATCAAACTT GCCTACGGCTGGTCATGAGCCACAGCCCATACATCAAACTT < 41bp 0.812748886071832 0.607457917846601 0.018636465 0.02981478 prediction 0.410581936450462 Functional Loss - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40432548 chr1:40432551 nonsynonymous SNV 0.718 3 24 hm5C_associated_SNPs_94027 0 0 0 0 2 MFSD2A chr1:40432483 3'AG 40432483 Downstream 69bp
chr1 40432551 40432551 1 + G A BLCA 40432548 + 40432528 40432568 41 GCCTACGGCTGGTCATGAGCCACGGCCCATACATCAAACTT GCCTACGGCTGGTCATGAGCCACAGCCCATACATCAAACTT < 41bp 0.812748886071832 0.607457917846601 0.018636465 0.02981478 prediction 0.410581936450462 Functional Loss - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40432548 chr1:40432551 nonsynonymous SNV 0.718 3 24 hm5C_associated_SNPs_94027 0 0 0 0 2 MFSD2A chr1:40432604 5'GT 40432604 Upstream 54bp
chr3 167525048 167525048 1 + G A SKCM 167525045 + 167525025 167525065 41 TCTCCAGGTTCACAGTGGAACAGGAAATTGATTTAAAAGAT TCTCCAGGTTCACAGTGGAACAGAAAATTGATTTAAAAGAT < 41bp 0.705290922346768 0.488679676103928 0.19951019 0.12672818 prediction 0.410581844693537 Functional Loss - SERPINI1 ENSG00000163536 CDS Human protein_coding chr3:167525045 chr3:167525048 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_94028 0 0 0 0 2 SERPINI1 chr3:167525032 3'AG 167525032 Downstream 17bp
chr3 167525048 167525048 1 + G A SKCM 167525045 + 167525025 167525065 41 TCTCCAGGTTCACAGTGGAACAGGAAATTGATTTAAAAGAT TCTCCAGGTTCACAGTGGAACAGAAAATTGATTTAAAAGAT < 41bp 0.705290922346768 0.488679676103928 0.19951019 0.12672818 prediction 0.410581844693537 Functional Loss - SERPINI1 ENSG00000163536 CDS Human protein_coding chr3:167525045 chr3:167525048 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_94028 0 0 0 0 2 SERPINI1 chr3:167525129 5'GT 167525129 Upstream 82bp
chr21 42749764 42749764 1 + T C LIHC 42749763 + 42749743 42749783 41 TACGAGCAGAAGGTGCGCCCCTGCATTGACCTCATCGACTC TACGAGCAGAAGGTGCGCCCCCGCATTGACCTCATCGACTC < 41bp 0.82409035158059 0.618805745500602 0.8556026 0.07101384 prediction 0.410569212159976 Functional Loss - MX2 ENSG00000183486 CDS Human protein_coding chr21:42749763 chr21:42749764 nonsynonymous SNV 0.937 3 22 hm5C_associated_SNPs_94032 0 0 0 0 1 MX2 chr21:42749716 3'AG 42749716 Downstream 49bp
chr16 28967500 28967500 1 + C T UCEC 28967497 + 28967477 28967517 41 TGAACAAGCGCCTCCAGGATCTCCGTTCCTGTCTGAGCCCC TGAACAAGCGCCTCCAGGATCTCTGTTCCTGTCTGAGCCCC < 41bp 0.778510945312281 0.573226883649132 0.51096714 0.23260641 prediction 0.410568123326298 Functional Loss - NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28967497 chr16:28967500 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_94033 0 0 1 0 1 NFATC2IP chr16:28967472 3'AG 28967472 Downstream 29bp
chr17 40639358 40639358 1 + C T KIRC 40639355 + 40639335 40639375 41 TGCCCTGTCACCGACCTTGACTCCATCCAGTTTGCACTCAG TGCCCTGTCACCGACCTTGACTCTATCCAGTTTGCACTCAG < 41bp 0.810766063312407 0.605482740331145 0.95096684 0.9333395 prediction 0.410566645962524 Functional Loss - ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40639355 chr17:40639358 synonymous SNV . 0 24 hm5C_associated_SNPs_94034 0 0 1 0 1 ATP6V0A1 chr17:40639385 5'GT 40639385 Upstream 28bp
chr19 49438363 49438363 1 + G A rs2270941 49438360 + 49438340 49438380 41 TGAGGAGCTGGCCAAGGACCCGAGCGTGGGTGAGTGGCGAG TGAGGAGCTGGCCAAGGACCCGAACGTGGGTGAGTGGCGAG < 41bp 0.825356656315766 0.620073761870795 0.57465106 0.26422042 prediction 0.410565788889941 Functional Loss - DHDH ENSG00000104808 CDS Human protein_coding chr19:49438360 chr19:49438363 nonsynonymous SNV 0.992 0 24 hm5C_associated_SNPs_94035 0 0 0 0 1 DHDH chr19:49438368 5'GT 49438368 Upstream 6bp
chr3 129251120 129251120 1 + C T SKCM 129251118 + 129251098 129251138 41 ATCCCCGAGGGCCTGCAGTGCTCGTGTGGAATCGACTACTA ATCCCCGAGGGCCTGCAGTGCTTGTGTGGAATCGACTACTA < 41bp 0.845019789123805 0.639737900046453 0.23424041 0.109981686 prediction 0.410563778154704 Functional Loss - RHO ENSG00000163914 CDS Human protein_coding chr3:129251118 chr3:129251120 nonsynonymous SNV 0.807 4 23 hm5C_associated_SNPs_94037 0 0 0 0 1 RHO chr3:129251094 3'AG 129251094 Downstream 27bp
chr15 41794294 41794294 1 + G A STAD 41794291 + 41794271 41794311 41 GCGGTGGATCCTGAAGCTCCCACGGAGGAGGAGCACGCGCA GCGGTGGATCCTGAAGCTCCCACAGAGGAGGAGCACGCGCA < 41bp 0.81829480111074 0.613013186238267 0.8187804 0.30485272 prediction 0.410563229744948 Functional Loss - ITPKA ENSG00000137825 CDS Human protein_coding chr15:41794291 chr15:41794294 synonymous SNV . 0 24 hm5C_associated_SNPs_94038 0 0 1 0 1 ITPKA chr15:41794195 3'AG 41794195 Downstream 100bp
chr21 35147043 35147043 1 + G C UCEC 35147042 + 35147022 35147062 41 AAATGTCACAGGCTGCAAAACGGGAACTTGAAAGGCAACGA AAATGTCACAGGCTGCAAAACCGGAACTTGAAAGGCAACGA < 41bp 0.705277896583023 0.444728735311134 0.40197545 0.24164668 prediction 0.410555793166046 Functional Loss - ITSN1 ENSG00000205726 CDS Human protein_coding chr21:35147042 chr21:35147043 nonsynonymous SNV 0.977 2 22 hm5C_associated_SNPs_94041 0 0 0 0 1 ITSN1 chr21:35147033 3'AG 35147033 Downstream 11bp
chr17 4794820 4794820 1 + G A KIRC 4794817 + 4794797 4794837 41 TACCCCGATCCCAGTCCCTGCAGGACCAGCCCACCCGAAAC TACCCCGATCCCAGTCCCTGCAGAACCAGCCCACCCGAAAC < 41bp 0.705276034430279 0.460067924414964 0.8612681 0.37623465 prediction 0.410552068860558 Functional Loss - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4794817 chr17:4794820 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_94043 0 0 0 0 2 MINK1 chr17:4794751 3'AG 4794751 Downstream 70bp
chr17 4794820 4794820 1 + G A KIRC 4794817 + 4794797 4794837 41 TACCCCGATCCCAGTCCCTGCAGGACCAGCCCACCCGAAAC TACCCCGATCCCAGTCCCTGCAGAACCAGCCCACCCGAAAC < 41bp 0.705276034430279 0.460067924414964 0.8612681 0.37623465 prediction 0.410552068860558 Functional Loss - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4794817 chr17:4794820 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_94043 0 0 0 0 2 MINK1 chr17:4794811 3'AG 4794811 Downstream 10bp
chr7 127231035 127231035 1 + C T UCEC 127231032 + 127231012 127231052 41 CTCAGCTGCAGGAGGACGAGCTGCGGGATGCAGTGCTGCTG CTCAGCTGCAGGAGGACGAGCTGTGGGATGCAGTGCTGCTG < 41bp 0.749967827331382 0.544697057805575 0.762618 0.7786895 prediction 0.410541539051615 Functional Loss - ARF5 ENSG00000004059 CDS Human protein_coding chr7:127231032 chr7:127231035 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_94046 0 0 1 0 1 ARF5 chr7:127231017 3'AG 127231017 Downstream 19bp
chr6 133421232 133421232 1 + G A UCEC 133421229 + 133421209 133421249 41 GAAGACAAAATCGTTTTCATCACGAAGAATATGTGCTCAGT GAAGACAAAATCGTTTTCATCACAAAGAATATGTGCTCAGT < 41bp 0.730832229857977 0.525563503144501 0.12301406 0.071454644 prediction 0.410537453426952 Functional Loss - LINC00326 ENSG00000231023 ncRNA_exonic Human lincRNA chr6:133421229 chr6:133421232 . . 0 24 hm5C_associated_SNPs_94051 0 0 0 0 2 LINC00326 chr6:133421146 3'AG 133421146 Downstream 87bp
chr6 133421232 133421232 1 + G A UCEC 133421229 + 133421209 133421249 41 GAAGACAAAATCGTTTTCATCACGAAGAATATGTGCTCAGT GAAGACAAAATCGTTTTCATCACAAAGAATATGTGCTCAGT < 41bp 0.730832229857977 0.525563503144501 0.12301406 0.071454644 prediction 0.410537453426952 Functional Loss - LINC00326 ENSG00000231023 ncRNA_exonic Human lincRNA chr6:133421229 chr6:133421232 . . 0 24 hm5C_associated_SNPs_94051 0 0 0 0 2 LINC00326 chr6:133421323 5'GT 133421323 Upstream 92bp
chr5 148745541 148745541 1 + G T LUAD 148745538 + 148745518 148745558 41 CAGGCCCACGGCTATGCCTTCTCGGGTGTGGAGGAGCTGCT CAGGCCCACGGCTATGCCTTCTCTGGTGTGGAGGAGCTGCT < 41bp 0.705266425083622 0.304805802157935 0.09030771 0.23880622 prediction 0.410532850167244 Functional Loss - PCYOX1L ENSG00000145882 CDS Human protein_coding chr5:148745538 chr5:148745541 synonymous SNV . 0 24 hm5C_associated_SNPs_94053 0 0 1 0 1 PCYOX1L chr5:148745505 3'AG 148745505 Downstream 37bp
chr12 113445679 113445679 1 + G T SARC 113445677 + 113445657 113445697 41 TATCAGCAGCTCTGCATCTTCTGGAAGGTCAATTACAACTT TATCAGCAGCTCTGCATCTTCTTGAAGGTCAATTACAACTT < 41bp 0.907638824518665 0.702375721578957 0.31649905 0.17548794 prediction 0.410526205879417 Functional Loss - OAS2 ENSG00000111335 CDS Human protein_coding chr12:113445677 chr12:113445679 nonsynonymous SNV 0.913 3 23 hm5C_associated_SNPs_94055 0 0 0 0 1 OAS2 chr12:113445748 5'GT 113445748 Upstream 70bp
chr11 63676447 63676447 1 + C T UCEC 63676445 + 63676425 63676465 41 TTCACGTGGAGTATGAAGACCACGAGCTCCATGGAGCCCAA TTCACGTGGAGTATGAAGACCATGAGCTCCATGGAGCCCAA < 41bp 0.854351619338487 0.649098139393985 0.32466367 0.21063101 prediction 0.410506959889003 Functional Loss - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63676445 chr11:63676447 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_94059 0 0 1 0 1 MARK2 chr11:63676349 3'AG 63676349 Downstream 99bp
chr5 140049152 140049152 1 + C T UCEC 140049149 + 140049129 140049169 41 CTGAGCAGCAAGACTTGGAGCACCGATGACTTCTTCGCAGG CTGAGCAGCAAGACTTGGAGCACTGATGACTTCTTCGCAGG < 41bp 0.713510760041234 0.50825756550736 0.11693701 0.11958665 prediction 0.410506389067748 Functional Loss - WDR55 ENSG00000120314 CDS Human protein_coding chr5:140049149 chr5:140049152 synonymous SNV . 0 24 hm5C_associated_SNPs_94060 0 0 1 0 1 WDR55 chr5:140049066 3'AG 140049066 Downstream 87bp
chr20 54940178 54940178 1 + C T rs538728588 54940175 + 54940155 54940195 41 GCCACGGGGACAACAGGCAGCAGCGTCAGCTGCACAGAGGA GCCACGGGGACAACAGGCAGCAGTGTCAGCTGCACAGAGGA < 41bp 0.711957302722949 0.506704845134753 0.5175044 0.36814737 prediction 0.410504915176391 Functional Loss - FAM210B ENSG00000124098 CDS Human protein_coding chr20:54940175 chr20:54940178 synonymous SNV . 0 24 hm5C_associated_SNPs_94061 0 0 1 0 1 FAM210B chr20:54940143 3'AG 54940143 Downstream 36bp
chr1 178511975 178511975 1 + C T rs4614220 178511973 + 178511953 178511993 41 CTCCTGGGGAAAAGGCTTTTCACGGAGCAGGCTCGGAGCCT CTCCTGGGGAAAAGGCTTTTCATGGAGCAGGCTCGGAGCCT < 41bp 0.798609376585368 0.593357716958951 0.8663568 0.83740425 prediction 0.410503319252833 Functional Loss - C1orf220 ENSG00000184909;ENSG00000213057 UTR5 Human other chr1:178511973 chr1:178511975 . . 0 23 hm5C_associated_SNPs_94062 0 0 0 0 1 C1orf220 chr1:178512020 5'GT 178512020 Upstream 46bp
chr1 207818618 207818618 1 + C T rs61739989 207818616 + 207818596 207818636 41 TCTCGAGCGTCCCTTTCCTTCCCGGCGCTTTCCTGGGTTGC TCTCGAGCGTCCCTTTCCTTCCTGGCGCTTTCCTGGGTTGC < 41bp 0.705250835109282 0.481226140657074 0.8641734 0.176164 prediction 0.410501670218564 Functional Loss - CR1L ENSG00000197721 CDS Human protein_coding chr1:207818616 chr1:207818618 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_94063 0 0 1 0 1 CR1L chr1:207818675 5'GT 207818675 Upstream 58bp
chr1 207818619 207818619 1 + G A STAD 207818616 + 207818596 207818636 41 TCTCGAGCGTCCCTTTCCTTCCCGGCGCTTTCCTGGGTTGC TCTCGAGCGTCCCTTTCCTTCCCAGCGCTTTCCTGGGTTGC < 41bp 0.705250835109282 0.451174731759727 0.8641734 0.62068564 prediction 0.410501670218564 Functional Loss - CR1L ENSG00000197721 CDS Human protein_coding chr1:207818616 chr1:207818619 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_94064 0 0 1 0 1 CR1L chr1:207818675 5'GT 207818675 Upstream 57bp
chr6 53778706 53778706 1 + C T UCEC 53778704 + 53778684 53778724 41 TGTACGTGACAACAGACTAACTCGGATACCTGCAGAGGTGT TGTACGTGACAACAGACTAACTTGGATACCTGCAGAGGTGT < 41bp 0.705244584967506 0.407374706060781 0.23182726 0.22043654 prediction 0.410489169935013 Functional Loss - LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53778704 chr6:53778706 nonsynonymous SNV 0.981 3 23 hm5C_associated_SNPs_94067 0 0 1 0 2 LRRC1 chr6:53778652 3'AG 53778652 Downstream 55bp
chr6 53778706 53778706 1 + C T UCEC 53778704 + 53778684 53778724 41 TGTACGTGACAACAGACTAACTCGGATACCTGCAGAGGTGT TGTACGTGACAACAGACTAACTTGGATACCTGCAGAGGTGT < 41bp 0.705244584967506 0.407374706060781 0.23182726 0.22043654 prediction 0.410489169935013 Functional Loss - LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53778704 chr6:53778706 nonsynonymous SNV 0.981 3 23 hm5C_associated_SNPs_94067 0 0 1 0 2 LRRC1 chr6:53778767 5'GT 53778767 Upstream 62bp
chr1 154229706 154229706 1 + G A BLCA 154229703 + 154229683 154229723 41 AGCAACTCCACTGTCACAGCCTCGACTCGAAGCTCAGTTGC AGCAACTCCACTGTCACAGCCTCAACTCGAAGCTCAGTTGC < 41bp 0.812773752822406 0.607531833840279 0.3872309 0.0106111765 prediction 0.410483837964255 Functional Loss - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154229703 chr1:154229706 synonymous SNV . 0 24 hm5C_associated_SNPs_94072 0 0 1 0 1 UBAP2L chr1:154229734 5'GT 154229734 Upstream 29bp
chr2 73477030 73477030 1 + G A COAD 73477027 + 73477007 73477047 41 TGCCAGGTGTTTGAAGAGACCCAGATTGGAGGCGAGAGGTG TGCCAGGTGTTTGAAGAGACCCAAATTGGAGGCGAGAGGTG < 41bp 0.824779144990302 0.619540677355242 0.091991186 0.043579757 prediction 0.410476935270119 Functional Loss - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73477027 chr2:73477030 synonymous SNV . 0 24 hm5C_associated_SNPs_94075 0 0 1 0 2 CCT7 chr2:73476947 3'AG 73476947 Downstream 84bp
chr2 73477030 73477030 1 + G A COAD 73477027 + 73477007 73477047 41 TGCCAGGTGTTTGAAGAGACCCAGATTGGAGGCGAGAGGTG TGCCAGGTGTTTGAAGAGACCCAAATTGGAGGCGAGAGGTG < 41bp 0.824779144990302 0.619540677355242 0.091991186 0.043579757 prediction 0.410476935270119 Functional Loss - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73477027 chr2:73477030 synonymous SNV . 0 24 hm5C_associated_SNPs_94075 0 0 1 0 2 CCT7 chr2:73477044 5'GT 73477044 Upstream 15bp
chr11 60699509 60699509 1 + C T rs376819954 60699506 + 60699486 60699526 41 ACTGGAGTGCCCCAGCATGTCCCCGTGCGCCTTGTCACTGT ACTGGAGTGCCCCAGCATGTCCCTGTGCGCCTTGTCACTGT < 41bp 0.731174716796844 0.525939368073238 0.017734349 0.009524614 prediction 0.410470697447213 Functional Loss - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60699506 chr11:60699509 synonymous SNV . 0 24 hm5C_associated_SNPs_94077 0 0 0 0 2 TMEM132A chr11:60699456 3'AG 60699456 Downstream 54bp
chr11 60699509 60699509 1 + C T rs376819954 60699506 + 60699486 60699526 41 ACTGGAGTGCCCCAGCATGTCCCCGTGCGCCTTGTCACTGT ACTGGAGTGCCCCAGCATGTCCCTGTGCGCCTTGTCACTGT < 41bp 0.731174716796844 0.525939368073238 0.017734349 0.009524614 prediction 0.410470697447213 Functional Loss - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60699506 chr11:60699509 synonymous SNV . 0 24 hm5C_associated_SNPs_94077 0 0 0 0 2 TMEM132A chr11:60699599 5'GT 60699599 Upstream 91bp
chr4 158233857 158233857 1 + G A SKCM 158233854 + 158233834 158233874 41 TATCAACACTGCAAGCTGTGCTGGATTCTGCTGCTGAAAAG TATCAACACTGCAAGCTGTGCTGAATTCTGCTGCTGAAAAG < 41bp 0.75331370641005 0.548086842335562 0.31673896 0.18520728 prediction 0.410453728148977 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158233854 chr4:158233857 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_94082 0 0 0 6 1 GRIA2 chr4:158233831 3'AG 158233831 Downstream 27bp
chr19 54395868 54395868 1 + G A HNSC 54395865 + 54395845 54395885 41 GGGGCCATGTCCTTTGGCGTCTCGGAGCTGCTCAAGGCGCC GGGGCCATGTCCTTTGGCGTCTCAGAGCTGCTCAAGGCGCC < 41bp 0.827818821404923 0.622593429782916 0.19288239 0.13026989 prediction 0.410450783244015 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54395865 chr19:54395868 synonymous SNV . 0 24 hm5C_associated_SNPs_94084 0 0 0 0 1 PRKCG chr19:54395897 5'GT 54395897 Upstream 30bp
chr2 228786214 228786214 1 + G A LUSC 228786211 + 228786191 228786231 41 CTGGCCAGTGCCTCCAGGTTCTTGAGGGGCACACTGATGAA CTGGCCAGTGCCTCCAGGTTCTTAAGGGGCACACTGATGAA < 41bp 0.81055803766334 0.605333724883732 0.45597902 0.40680695 prediction 0.410448625559216 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228786211 chr2:228786214 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_94085 0 0 0 0 2 DAW1 chr2:228786115 3'AG 228786115 Downstream 100bp
chr2 228786214 228786214 1 + G A LUSC 228786211 + 228786191 228786231 41 CTGGCCAGTGCCTCCAGGTTCTTGAGGGGCACACTGATGAA CTGGCCAGTGCCTCCAGGTTCTTAAGGGGCACACTGATGAA < 41bp 0.81055803766334 0.605333724883732 0.45597902 0.40680695 prediction 0.410448625559216 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228786211 chr2:228786214 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_94085 0 0 0 0 2 DAW1 chr2:228786277 5'GT 228786277 Upstream 64bp
chr22 21642021 21642021 1 + T C rs561194537 21642020 + 21642000 21642040 41 CTCAGCAGCAACACCAAATCCTGGACCAGGCAGAAACCACC CTCAGCAGCAACACCAAATCCCGGACCAGGCAGAAACCACC < 41bp 0.743363781461965 0.538145963944514 0.17680037 0.22320098 prediction 0.410435635034902 Functional Loss - POM121L8P ENSG00000229266;ENSG00000169662 intergenic Human other chr22:21642020 chr22:21642021 . . 0 22 hm5C_associated_SNPs_94087 0 0 0 0 1 POM121L8P chr22:21642077 5'GT 21642077 Upstream 57bp
chr3 57291297 57291297 1 + G A UCEC 57291294 + 57291274 57291314 41 ACAATCTCGGCCACCGACAGCTCGAACCAGCAGTTCAGGAT ACAATCTCGGCCACCGACAGCTCAAACCAGCAGTTCAGGAT < 41bp 0.705217748904016 0.472308459452184 0.2007778 0.39640883 prediction 0.410435497808032 Functional Loss - APPL1 ENSG00000157500 CDS Human protein_coding chr3:57291294 chr3:57291297 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_94088 0 0 1 0 1 APPL1 chr3:57291274 3'AG 57291274 Downstream 24bp
chr10 104835919 104835919 1 + C T rs943037 104835916 + 104835896 104835936 41 AGTCGAAGCGACCGGATTGACGCCGTCACACCAACACTGGG AGTCGAAGCGACCGGATTGACGCTGTCACACCAACACTGGG < 41bp 0.705216121127449 0.485884731657146 0.22202364 0.09898794 prediction 0.410432242254898 Functional Loss - CNNM2 ENSG00000148842 CDS Human protein_coding chr10:104835916 chr10:104835919 synonymous SNV . 0 24 hm5C_associated_SNPs_94089 1 1 0 0 1 CNNM2 chr10:104835843 3'AG 104835843 Downstream 77bp
chr21 45706903 45706903 1 + C T SKCM 45706900 + 45706880 45706920 41 CCGGAAGGGGAGGAAGCCCCCGGCCGTCCCCAAGGCTTTGG CCGGAAGGGGAGGAAGCCCCCGGTCGTCCCCAAGGCTTTGG < 41bp 0.712134563852493 0.50692705432924 0.46889177 0.37516928 prediction 0.410415019046505 Functional Loss - AIRE ENSG00000160224 CDS Human protein_coding chr21:45706900 chr21:45706903 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_94091 0 0 0 0 1 AIRE chr21:45706861 3'AG 45706861 Downstream 43bp
chr1 153004864 153004864 1 + C T CESC 153004862 + 153004842 153004882 41 GCAGCCTTGCACCCCACCCCCTCAGCTTCAGCAGCAGCAGG GCAGCCTTGCACCCCACCCCCTTAGCTTCAGCAGCAGCAGG < 41bp 0.705206894372248 0.450425378452613 0.047166646 0.08089864 prediction 0.410413788744496 Functional Loss - SPRR1B ENSG00000169469 CDS Human protein_coding chr1:153004862 chr1:153004864 stopgain 0.317 0 23 hm5C_associated_SNPs_94092 0 0 0 1 1 SPRR1B chr1:153004803 3'AG 153004803 Downstream 62bp
chr2 71743372 71743372 1 + G A SKCM 71743369 + 71743349 71743389 41 TTTGATGAGCCCATCTTTATCACGGTATGTCTCAGCAGTCA TTTGATGAGCCCATCTTTATCACAGTATGTCTCAGCAGTCA < 41bp 0.718275571454636 0.513070016604798 0.6219224 0.47042572 prediction 0.410411109699676 Functional Loss - DYSF ENSG00000135636 CDS Human protein_coding chr2:71743369 chr2:71743372 synonymous SNV . 0 24 hm5C_associated_SNPs_94093 0 0 0 0 2 DYSF chr2:71743310 3'AG 71743310 Downstream 63bp
chr2 71743372 71743372 1 + G A SKCM 71743369 + 71743349 71743389 41 TTTGATGAGCCCATCTTTATCACGGTATGTCTCAGCAGTCA TTTGATGAGCCCATCTTTATCACAGTATGTCTCAGCAGTCA < 41bp 0.718275571454636 0.513070016604798 0.6219224 0.47042572 prediction 0.410411109699676 Functional Loss - DYSF ENSG00000135636 CDS Human protein_coding chr2:71743369 chr2:71743372 synonymous SNV . 0 24 hm5C_associated_SNPs_94093 0 0 0 0 2 DYSF chr2:71743372 5'GT 71743372 Upstream 1bp
chr20 62850364 62850364 1 + G A KIRC 62850361 + 62850341 62850381 41 GAGATGCCTGAGAACCTCAGCACGAAGCCACAGGACCTCCC GAGATGCCTGAGAACCTCAGCACAAAGCCACAGGACCTCCC < 41bp 0.705200053816837 0.458715271510385 0.287306 0.15341315 prediction 0.410400107633675 Functional Loss - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62850361 chr20:62850364 synonymous SNV . 0 24 hm5C_associated_SNPs_94096 0 0 0 0 1 MYT1 chr20:62850388 5'GT 62850388 Upstream 25bp
chr3 191098047 191098047 1 + A T HNSC 191098043 + 191098023 191098063 41 ATGCTGAAATTGCCAGAAAACTGCAAGAAGAAGAACTTTTG ATGCTGAAATTGCCAGAAAACTGCTAGAAGAAGAACTTTTG < 41bp 0.705198089375188 0.362993735058002 0.18675792 0.18743211 prediction 0.410396178750376 Functional Loss - CCDC50 ENSG00000152492 CDS Human protein_coding chr3:191098043 chr3:191098047 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_94097 0 0 1 0 2 CCDC50 chr3:191097948 3'AG 191097948 Downstream 100bp
chr3 191098047 191098047 1 + A T HNSC 191098043 + 191098023 191098063 41 ATGCTGAAATTGCCAGAAAACTGCAAGAAGAAGAACTTTTG ATGCTGAAATTGCCAGAAAACTGCTAGAAGAAGAACTTTTG < 41bp 0.705198089375188 0.362993735058002 0.18675792 0.18743211 prediction 0.410396178750376 Functional Loss - CCDC50 ENSG00000152492 CDS Human protein_coding chr3:191098043 chr3:191098047 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_94097 0 0 1 0 2 CCDC50 chr3:191098063 5'GT 191098063 Upstream 17bp
chr1 154245986 154245986 1 + C T UCEC 154245984 + 154245964 154246004 41 CAGGAGGAGGGATACGTTTCCACGATAACTTCGGCTTTGAT CAGGAGGAGGGATACGTTTCCATGATAACTTCGGCTTTGAT < 41bp 0.795002753386174 0.589806093354747 0.20318466 0.18138137 prediction 0.410393320062853 Functional Loss - HAX1 ENSG00000143575 CDS Human protein_coding chr1:154245984 chr1:154245986 synonymous SNV . 0 23 hm5C_associated_SNPs_94100 0 0 1 0 2 HAX1 chr1:154245956 3'AG 154245956 Downstream 31bp
chr1 154245986 154245986 1 + C T UCEC 154245984 + 154245964 154246004 41 CAGGAGGAGGGATACGTTTCCACGATAACTTCGGCTTTGAT CAGGAGGAGGGATACGTTTCCATGATAACTTCGGCTTTGAT < 41bp 0.795002753386174 0.589806093354747 0.20318466 0.18138137 prediction 0.410393320062853 Functional Loss - HAX1 ENSG00000143575 CDS Human protein_coding chr1:154245984 chr1:154245986 synonymous SNV . 0 23 hm5C_associated_SNPs_94100 0 0 1 0 2 HAX1 chr1:154246074 5'GT 154246074 Upstream 89bp
chr11 121466457 121466457 1 + G A SKCM 121466454 + 121466434 121466474 41 GTGACGGCCACCAAGATTGCCAGGATGGCCGGGACGAGGCC GTGACGGCCACCAAGATTGCCAGAATGGCCGGGACGAGGCC < 41bp 0.705193959837418 0.466101214435639 0.8410391 0.7461247 prediction 0.410387919674836 Functional Loss - SORL1 ENSG00000137642 CDS Human protein_coding chr11:121466454 chr11:121466457 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_94101 0 0 1 0 1 SORL1 chr11:121466481 5'GT 121466481 Upstream 25bp
chr9 132982079 132982079 1 + C T UCEC 132982076 + 132982056 132982096 41 GGGGAACCCTGGATGAGAAGCTACGGTGTAAGTCCTGCCCC GGGGAACCCTGGATGAGAAGCTATGGTGTAAGTCCTGCCCC < 41bp 0.740719711940738 0.535530748509921 0.42639336 0.29612175 prediction 0.410377926861635 Functional Loss - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132982076 chr9:132982079 nonsynonymous SNV 0.968 3 24 hm5C_associated_SNPs_94106 0 0 1 0 2 NCS1 chr9:132982004 3'AG 132982004 Downstream 76bp
chr9 132982079 132982079 1 + C T UCEC 132982076 + 132982056 132982096 41 GGGGAACCCTGGATGAGAAGCTACGGTGTAAGTCCTGCCCC GGGGAACCCTGGATGAGAAGCTATGGTGTAAGTCCTGCCCC < 41bp 0.740719711940738 0.535530748509921 0.42639336 0.29612175 prediction 0.410377926861635 Functional Loss - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132982076 chr9:132982079 nonsynonymous SNV 0.968 3 24 hm5C_associated_SNPs_94106 0 0 1 0 2 NCS1 chr9:132982082 5'GT 132982082 Upstream 4bp
chr19 50955149 50955149 1 + G A rs368206950 50955146 + 50955126 50955166 41 CCAAAGATCCACTTGGATTGCTCGGGGAAGACCTCAGAGAA CCAAAGATCCACTTGGATTGCTCAGGGAAGACCTCAGAGAA < 41bp 0.82039524354486 0.615207239980667 0.35183197 0.110491544 prediction 0.410376007128387 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50955146 chr19:50955149 synonymous SNV . 0 24 hm5C_associated_SNPs_94107 0 0 0 0 1 MYBPC2 chr19:50955121 3'AG 50955121 Downstream 29bp
chr12 6948210 6948210 1 + G A LUAD 6948207 + 6948187 6948227 41 GCGCCTTGTGGCCTTCAGCTCCGGTGTCGAGAATCCCCATG GCGCCTTGTGGCCTTCAGCTCCGATGTCGAGAATCCCCATG < 41bp 0.705186403666498 0.451589185917921 0.86517787 0.41796315 prediction 0.410372807332995 Functional Loss - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6948207 chr12:6948210 nonsynonymous SNV 0.942 3 24 hm5C_associated_SNPs_94108 0 0 1 0 2 P3H3 chr12:6948164 3'AG 6948164 Downstream 47bp
chr12 6948210 6948210 1 + G A LUAD 6948207 + 6948187 6948227 41 GCGCCTTGTGGCCTTCAGCTCCGGTGTCGAGAATCCCCATG GCGCCTTGTGGCCTTCAGCTCCGATGTCGAGAATCCCCATG < 41bp 0.705186403666498 0.451589185917921 0.86517787 0.41796315 prediction 0.410372807332995 Functional Loss - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6948207 chr12:6948210 nonsynonymous SNV 0.942 3 24 hm5C_associated_SNPs_94108 0 0 1 0 2 P3H3 chr12:6948304 5'GT 6948304 Upstream 95bp
chr1 22924701 22924701 1 + T C STAD 22924700 + 22924680 22924720 41 ACGGCTCTCTGGACACCTTCCTGAGGGTGCGTGTCCCACCC ACGGCTCTCTGGACACCTTCCCGAGGGTGCGTGTCCCACCC < 41bp 0.705185008435798 0.455262185827892 0.18382418 0.9146165 prediction 0.410370016871596 Functional Loss - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22924700 chr1:22924701 nonsynonymous SNV 0.988 5 22 hm5C_associated_SNPs_94110 0 0 0 0 1 EPHA8 chr1:22924644 3'AG 22924644 Downstream 58bp
chr5 76332437 76332437 1 + T C LIHC 76332436 + 76332416 76332456 41 CTTAGAAGGCTCATCATTAGCTGAAAGTTTGAGAGCTGCAG CTTAGAAGGCTCATCATTAGCCGAAAGTTTGAGAGCTGCAG < 41bp 0.827022240955903 0.621842145471391 0.20703772 0.23457766 prediction 0.410360190969024 Functional Loss - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76332436 chr5:76332437 synonymous SNV . 0 22 hm5C_associated_SNPs_94112 0 0 1 1 1 AGGF1 chr5:76332381 3'AG 76332381 Downstream 57bp
chr7 5920569 5920569 1 + C T rs117756190 5920566 + 5920546 5920586 41 CTGACGACATTGCAGCAGCGCTCCAGGAATGCCGAGGTAGA CTGACGACATTGCAGCAGCGCTCTAGGAATGCCGAGGTAGA < 41bp 0.725864472109223 0.520686212505673 0.64046836 0.51521504 prediction 0.4103565192071 Functional Loss - OCM ENSG00000122543 CDS Human protein_coding chr7:5920566 chr7:5920569 stopgain 0.986 0 24 hm5C_associated_SNPs_94114 0 0 0 0 1 OCM chr7:5920581 5'GT 5920581 Upstream 13bp
chr6 36260897 36260897 1 + C T UCEC 36260894 + 36260874 36260914 41 GGCCTCATCCCCCCGACTTACCGCGGTGTGGTGAGTGCTTC GGCCTCATCCCCCCGACTTACCGTGGTGTGGTGAGTGCTTC < 41bp 0.707164253847968 0.501986183076223 0.4629262 0.506177 prediction 0.410356141543491 Functional Loss - PNPLA1 ENSG00000180316 CDS Human protein_coding chr6:36260894 chr6:36260897 synonymous SNV . 0 24 hm5C_associated_SNPs_94116 0 0 0 0 2 PNPLA1 chr6:36260838 3'AG 36260838 Downstream 60bp
chr6 36260897 36260897 1 + C T UCEC 36260894 + 36260874 36260914 41 GGCCTCATCCCCCCGACTTACCGCGGTGTGGTGAGTGCTTC GGCCTCATCCCCCCGACTTACCGTGGTGTGGTGAGTGCTTC < 41bp 0.707164253847968 0.501986183076223 0.4629262 0.506177 prediction 0.410356141543491 Functional Loss - PNPLA1 ENSG00000180316 CDS Human protein_coding chr6:36260894 chr6:36260897 synonymous SNV . 0 24 hm5C_associated_SNPs_94116 0 0 0 0 2 PNPLA1 chr6:36260903 5'GT 36260903 Upstream 7bp
chr10 89505639 89505639 1 + G A UCEC 89505636 + 89505616 89505656 41 AACTCGAATGAGGAAGCTCGCCCGGGAAGGAGAGAATCCCC AACTCGAATGAGGAAGCTCGCCCAGGAAGGAGAGAATCCCC < 41bp 0.705177732464819 0.477536825919711 0.31524727 0.07272491 prediction 0.410355464929638 Functional Loss - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89505636 chr10:89505639 nonsynonymous SNV 0.977 3 24 hm5C_associated_SNPs_94117 0 0 0 0 1 PAPSS2 chr10:89505589 3'AG 89505589 Downstream 51bp
chr19 498524 498524 1 + A C rs2302217 498523 + 498503 498543 41 GGACCAGCTGACCGTCTCCCCAGCAGCCCTGGTGCCTGGTG GGACCAGCTGACCGTCTCCCCCGCAGCCCTGGTGCCTGGTG < 41bp 0.847013276264217 0.641836426402144 0.32706833 0.08517188 prediction 0.410353699724145 Functional Loss - MADCAM1 ENSG00000099866 CDS Human protein_coding chr19:498523 chr19:498524 synonymous SNV . 0 22 hm5C_associated_SNPs_94118 0 0 0 0 1 MADCAM1 chr19:498496 3'AG 498496 Downstream 29bp
chr22 17984030 17984030 1 + C T LUSC 17984027 + 17984007 17984047 41 GAGGACTTCCTGCCTGAGATCTGCAACATGATCGCCCAGAA GAGGACTTCCTGCCTGAGATCTGTAACATGATCGCCCAGAA < 41bp 0.770411354139475 0.565236271489686 0.3413891 0.28107947 prediction 0.410350165299578 Functional Loss - CECR2 ENSG00000099954 CDS Human protein_coding chr22:17984027 chr22:17984030 synonymous SNV . 0 24 hm5C_associated_SNPs_94121 0 0 1 0 1 CECR2 chr22:17984048 5'GT 17984048 Upstream 19bp
chr13 113976673 113976673 1 + C T BLCA 113976670 + 113976650 113976690 41 GGTGCCCTGGCGGGGCTGGTCCTCATCGTCCTCATCGCCTA GGTGCCCTGGCGGGGCTGGTCCTTATCGTCCTCATCGCCTA < 41bp 0.731349079909812 0.526174943251427 0.01945898 0.01742205 prediction 0.410348273316771 Functional Loss - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113976670 chr13:113976673 synonymous SNV . 0 24 hm5C_associated_SNPs_94122 0 0 1 0 1 LAMP1 chr13:113976597 3'AG 113976597 Downstream 77bp
chr2 71256089 71256089 1 + G T STAD 71256085 + 71256065 71256105 41 CCACGGAATCTCACAGGAGCCTGAGAACTCCTCCTCCTGGG CCACGGAATCTCACAGGAGCCTGATAACTCCTCCTCCTGGG < 41bp 0.710030112319257 0.504861043441725 0.123976886 0.08456135 prediction 0.410338137755064 Functional Loss - OR7E91P ENSG00000236469 ncRNA_intronic Human antisense chr2:71256085 chr2:71256089 . . 0 25 hm5C_associated_SNPs_94124 0 0 0 0 1 OR7E91P chr2:71256046 3'AG 71256046 Downstream 44bp
chr22 25023413 25023413 1 + G A SKCM 25023410 + 25023390 25023430 41 TCTCGGCAGGTGGTCCGCAACATGACCTCCGAGTTCTTCGC TCTCGGCAGGTGGTCCGCAACATAACCTCCGAGTTCTTCGC < 41bp 0.809344347737311 0.604180462085955 0.24290478 0.21354356 prediction 0.410327771302711 Functional Loss - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25023410 chr22:25023413 nonsynonymous SNV 0.815 2 24 hm5C_associated_SNPs_94126 0 0 0 0 1 GGT1 chr22:25023399 3'AG 25023399 Downstream 15bp
chr1 210006627 210006627 1 + C T ESCA 210006625 + 210006605 210006645 41 AAGAGTTCACAGATGCAAAACACGAGTCACTGTTCAGCCTG AAGAGTTCACAGATGCAAAACATGAGTCACTGTTCAGCCTG < 41bp 0.82016441937524 0.615001805356129 0.05001062 0.045915097 prediction 0.410325228038222 Functional Loss - DIEXF ENSG00000117597 CDS Human protein_coding chr1:210006625 chr1:210006627 synonymous SNV . 0 23 hm5C_associated_SNPs_94127 0 0 1 0 2 DIEXF chr1:210006530 3'AG 210006530 Downstream 98bp
chr1 210006627 210006627 1 + C T ESCA 210006625 + 210006605 210006645 41 AAGAGTTCACAGATGCAAAACACGAGTCACTGTTCAGCCTG AAGAGTTCACAGATGCAAAACATGAGTCACTGTTCAGCCTG < 41bp 0.82016441937524 0.615001805356129 0.05001062 0.045915097 prediction 0.410325228038222 Functional Loss - DIEXF ENSG00000117597 CDS Human protein_coding chr1:210006625 chr1:210006627 synonymous SNV . 0 23 hm5C_associated_SNPs_94127 0 0 1 0 2 DIEXF chr1:210006703 5'GT 210006703 Upstream 77bp
chr2 73471716 73471716 1 + G T ESCA 73471712 + 73471692 73471732 41 AAAAGTGTGCCATGACCGCTCTGAGCTCCAAGCTGATCTCC AAAAGTGTGCCATGACCGCTCTGATCTCCAAGCTGATCTCC < 41bp 0.705162375707257 0.490725277141286 0.22015446 0.04643163 prediction 0.410324751414513 Functional Loss - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73471712 chr2:73471716 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_94128 0 0 1 0 1 CCT7 chr2:73471672 3'AG 73471672 Downstream 45bp
chr16 90106768 90106768 1 + C T STAD 90106765 + 90106745 90106785 41 CCGCAGCCATCCAGGAGGTGCAGCAGAAGACAGGGTTCAAG CCGCAGCCATCCAGGAGGTGCAGTAGAAGACAGGGTTCAAG < 41bp 0.705160715516284 0.483487253461609 0.8874978 0.8053702 prediction 0.410321431032569 Functional Loss - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90106765 chr16:90106768 stopgain 1.000 1 24 hm5C_associated_SNPs_94130 0 0 1 0 1 GAS8 chr16:90106708 3'AG 90106708 Downstream 61bp
chr2 203139896 203139896 1 + G A LUSC 203139893 + 203139873 203139913 41 TATGGAAAGAATTTGAAACTCCAGAGAAAGCAAACAAAATG TATGGAAAGAATTTGAAACTCCAAAGAAAGCAAACAAAATG < 41bp 0.714784988237594 0.50962449570957 0.35272777 0.26596475 prediction 0.410320985056047 Functional Loss - NOP58 ENSG00000055044 CDS Human protein_coding chr2:203139893 chr2:203139896 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_94131 0 0 1 0 2 NOP58 chr2:203139836 3'AG 203139836 Downstream 61bp
chr2 203139896 203139896 1 + G A LUSC 203139893 + 203139873 203139913 41 TATGGAAAGAATTTGAAACTCCAGAGAAAGCAAACAAAATG TATGGAAAGAATTTGAAACTCCAAAGAAAGCAAACAAAATG < 41bp 0.714784988237594 0.50962449570957 0.35272777 0.26596475 prediction 0.410320985056047 Functional Loss - NOP58 ENSG00000055044 CDS Human protein_coding chr2:203139893 chr2:203139896 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_94131 0 0 1 0 2 NOP58 chr2:203139912 5'GT 203139912 Upstream 17bp
chr19 49090670 49090670 1 + G A BLCA 49090667 + 49090647 49090687 41 CTTCCCATCCAGATCTTCACCAAGGCCTTCTTCAGCTCCAA CTTCCCATCCAGATCTTCACCAAAGCCTTCTTCAGCTCCAA < 41bp 0.705149951984244 0.453882948259971 0.41794455 0.3409502 prediction 0.410299903968487 Functional Loss - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49090667 chr19:49090670 synonymous SNV . 0 24 hm5C_associated_SNPs_94137 0 0 0 0 1 SULT2B1 chr19:49090694 5'GT 49090694 Upstream 25bp
chr18 9954096 9954096 1 + G T UCEC 9954093 + 9954073 9954113 41 GGTAGCACATTCGGATAAACCTGGATCAACCTCAACTGCAT GGTAGCACATTCGGATAAACCTGTATCAACCTCAACTGCAT < 41bp 0.92692017339133 0.721772422296386 0.23800063 0.08379033 prediction 0.410295502189889 Functional Loss - VAPA ENSG00000101558 CDS Human protein_coding chr18:9954093 chr18:9954096 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_94138 0 0 1 0 1 VAPA chr18:9954050 3'AG 9954050 Downstream 47bp
chr9 110084315 110084315 1 + G T LUAD 110084313 + 110084293 110084333 41 TGTGGTTGACCCCCCTCAAGCAGCTAGTACTGGGGCTCCTC TGTGGTTGACCCCCCTCAAGCATCTAGTACTGGGGCTCCTC < 41bp 0.705142531165987 0.348943599499243 0.8662412 0.15023673 prediction 0.410285062331975 Functional Loss - RAD23B ENSG00000119318 CDS Human protein_coding chr9:110084313 chr9:110084315 nonsynonymous SNV 0.364 0 23 hm5C_associated_SNPs_94140 0 0 1 0 2 RAD23B chr9:110084264 3'AG 110084264 Downstream 52bp
chr9 110084315 110084315 1 + G T LUAD 110084313 + 110084293 110084333 41 TGTGGTTGACCCCCCTCAAGCAGCTAGTACTGGGGCTCCTC TGTGGTTGACCCCCCTCAAGCATCTAGTACTGGGGCTCCTC < 41bp 0.705142531165987 0.348943599499243 0.8662412 0.15023673 prediction 0.410285062331975 Functional Loss - RAD23B ENSG00000119318 CDS Human protein_coding chr9:110084313 chr9:110084315 nonsynonymous SNV 0.364 0 23 hm5C_associated_SNPs_94140 0 0 1 0 2 RAD23B chr9:110084399 5'GT 110084399 Upstream 85bp
chr17 30648009 30648009 1 + C T COAD 30648006 + 30647986 30648026 41 AGTTTGGGCGGGCCGTGTGGCTCCGCTTCCACCCGTCGGCC AGTTTGGGCGGGCCGTGTGGCTCTGCTTCCACCCGTCGGCC < 41bp 0.724955616188661 0.51981415569496 0.022011489 0.025183558 prediction 0.410282920987401 Functional Loss - RHBDL3 ENSG00000141314 CDS Human protein_coding chr17:30648006 chr17:30648009 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_94141 0 0 0 0 1 RHBDL3 chr17:30647977 3'AG 30647977 Downstream 33bp
chr11 62186565 62186565 1 + A C rs41535344 62186561 + 62186541 62186581 41 CGGGCCAGAGCATCCCCCTCCTCCACCATGAAACTCGCTGT CGGGCCAGAGCATCCCCCTCCTCCCCCATGAAACTCGCTGT < 41bp 0.705131042185724 0.409107841048638 0.8970752 0.02560544 prediction 0.410262084371448 Functional Loss - SCGB1A1 ENSG00000149021 UTR5 Human protein_coding chr11:62186561 chr11:62186565 . . 0 25 hm5C_associated_SNPs_94143 0 0 0 0 1 SCGB1A1 chr11:62186622 5'GT 62186622 Upstream 58bp
chr9 140083666 140083666 1 + T C BLCA 140083665 + 140083645 140083685 41 CCTGGCACGCAAGATTGCCTCTCGCAACGAGTTCGACCGGA CCTGGCACGCAAGATTGCCTCCCGCAACGAGTTCGACCGGA < 41bp 0.705128921660292 0.457333908766527 0.3594744 0.10155526 prediction 0.410257843320583 Functional Loss - SSNA1 ENSG00000176101 CDS Human protein_coding chr9:140083665 chr9:140083666 synonymous SNV . 0 22 hm5C_associated_SNPs_94144 0 0 1 0 1 SSNA1 chr9:140083717 5'GT 140083717 Upstream 52bp
chr2 24245738 24245738 1 + G C LUAD 24245734 + 24245714 24245754 41 CGCTGTGGGAGTGGGTTCTCCAGCGCTTTGGGAAGAAGACG CGCTGTGGGAGTGGGTTCTCCAGCCCTTTGGGAAGAAGACG < 41bp 0.705124877303759 0.398966869112971 0.5992566 0.37175864 prediction 0.410249754607517 Functional Loss - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24245734 chr2:24245738 nonsynonymous SNV 0.628 4 25 hm5C_associated_SNPs_94148 0 0 0 0 2 MFSD2B chr2:24245692 3'AG 24245692 Downstream 47bp
chr2 24245738 24245738 1 + G C LUAD 24245734 + 24245714 24245754 41 CGCTGTGGGAGTGGGTTCTCCAGCGCTTTGGGAAGAAGACG CGCTGTGGGAGTGGGTTCTCCAGCCCTTTGGGAAGAAGACG < 41bp 0.705124877303759 0.398966869112971 0.5992566 0.37175864 prediction 0.410249754607517 Functional Loss - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24245734 chr2:24245738 nonsynonymous SNV 0.628 4 25 hm5C_associated_SNPs_94148 0 0 0 0 2 MFSD2B chr2:24245772 5'GT 24245772 Upstream 35bp
chr8 110439312 110439312 1 + G A SARC 110439309 + 110439289 110439329 41 AATGGGAAGAATCTCAGTTACACGAGAGGGAACCTGTGCTG AATGGGAAGAATCTCAGTTACACAAGAGGGAACCTGTGCTG < 41bp 0.711404181402334 0.506283271290556 0.4504833 0.25801218 prediction 0.410241820223556 Functional Loss - PKHD1L1 ENSG00000205038 CDS Human protein_coding chr8:110439309 chr8:110439312 nonsynonymous SNV 0.177 3 24 hm5C_associated_SNPs_94151 0 0 0 0 2 PKHD1L1 chr8:110439231 3'AG 110439231 Downstream 82bp
chr8 110439312 110439312 1 + G A SARC 110439309 + 110439289 110439329 41 AATGGGAAGAATCTCAGTTACACGAGAGGGAACCTGTGCTG AATGGGAAGAATCTCAGTTACACAAGAGGGAACCTGTGCTG < 41bp 0.711404181402334 0.506283271290556 0.4504833 0.25801218 prediction 0.410241820223556 Functional Loss - PKHD1L1 ENSG00000205038 CDS Human protein_coding chr8:110439309 chr8:110439312 nonsynonymous SNV 0.177 3 24 hm5C_associated_SNPs_94151 0 0 0 0 2 PKHD1L1 chr8:110439385 5'GT 110439385 Upstream 74bp
chr16 843198 843198 1 + C T STAD 843196 + 843176 843216 41 CGTGCGGGACGTGCAGGCCACACGCGTGGGCCTCAAGGACC CGTGCGGGACGTGCAGGCCACATGCGTGGGCCTCAAGGACC < 41bp 0.705120451618379 0.455858189948682 0.27400106 0.4527228 prediction 0.410240903236759 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:843196 chr16:843198 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_94152 0 0 1 0 1 CHTF18 chr16:843144 3'AG 843144 Downstream 55bp
chr12 57962799 57962799 1 + C T PRAD 57962796 + 57962776 57962816 41 CTGGACGAGGCAAAGAATATCAACAAGTCACTGTCAGCTCT CTGGACGAGGCAAAGAATATCAATAAGTCACTGTCAGCTCT < 41bp 0.752566861043185 0.547453575936696 0.032067508 0.064706415 prediction 0.410226570212978 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57962796 chr12:57962799 synonymous SNV . 0 24 hm5C_associated_SNPs_94157 0 0 1 0 2 KIF5A chr12:57962746 3'AG 57962746 Downstream 54bp
chr12 57962799 57962799 1 + C T PRAD 57962796 + 57962776 57962816 41 CTGGACGAGGCAAAGAATATCAACAAGTCACTGTCAGCTCT CTGGACGAGGCAAAGAATATCAATAAGTCACTGTCAGCTCT < 41bp 0.752566861043185 0.547453575936696 0.032067508 0.064706415 prediction 0.410226570212978 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57962796 chr12:57962799 synonymous SNV . 0 24 hm5C_associated_SNPs_94157 0 0 1 0 2 KIF5A chr12:57962850 5'GT 57962850 Upstream 52bp
chr16 1825360 1825360 1 + C T CESC 1825358 + 1825338 1825378 41 GGGACACAGCAGCCAGAGAGCCCGAAGGTGGCCGGTGCCGA GGGACACAGCAGCCAGAGAGCCTGAAGGTGGCCGGTGCCGA < 41bp 0.824148774201944 0.619043766805424 0.36151722 0.2960121 prediction 0.410210014793039 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825358 chr16:1825360 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_94163 0 0 1 0 3 EME2 chr16:1825316 3'AG 1825316 Downstream 45bp
chr16 1825360 1825360 1 + C T CESC 1825358 + 1825338 1825378 41 GGGACACAGCAGCCAGAGAGCCCGAAGGTGGCCGGTGCCGA GGGACACAGCAGCCAGAGAGCCTGAAGGTGGCCGGTGCCGA < 41bp 0.824148774201944 0.619043766805424 0.36151722 0.2960121 prediction 0.410210014793039 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825358 chr16:1825360 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_94163 0 0 1 0 3 EME2 chr16:1825409 5'GT 1825409 Upstream 50bp
chr16 1825360 1825360 1 + C T CESC 1825358 + 1825338 1825378 41 GGGACACAGCAGCCAGAGAGCCCGAAGGTGGCCGGTGCCGA GGGACACAGCAGCCAGAGAGCCTGAAGGTGGCCGGTGCCGA < 41bp 0.824148774201944 0.619043766805424 0.36151722 0.2960121 prediction 0.410210014793039 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825358 chr16:1825360 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_94163 0 0 1 0 3 EME2 chr16:1825430 5'GT 1825430 Upstream 71bp
chr1 161293426 161293426 1 + C T LUSC 161293423 + 161293403 161293443 41 GACACGTTGGTCGTCATTGCCTCCGAGCCCACTTTAGCCCT GACACGTTGGTCGTCATTGCCTCTGAGCCCACTTTAGCCCT < 41bp 0.731776304004894 0.526671600560854 0.8480871 0.3225898 prediction 0.410209406888081 Functional Loss - SDHC ENSG00000143252 CDS Human protein_coding chr1:161293423 chr1:161293426 stopgain 0.989 0 24 hm5C_associated_SNPs_94165 3 0 1 0 2 SDHC chr1:161293404 3'AG 161293404 Downstream 23bp
chr1 161293426 161293426 1 + C T LUSC 161293423 + 161293403 161293443 41 GACACGTTGGTCGTCATTGCCTCCGAGCCCACTTTAGCCCT GACACGTTGGTCGTCATTGCCTCTGAGCCCACTTTAGCCCT < 41bp 0.731776304004894 0.526671600560854 0.8480871 0.3225898 prediction 0.410209406888081 Functional Loss - SDHC ENSG00000143252 CDS Human protein_coding chr1:161293423 chr1:161293426 stopgain 0.989 0 24 hm5C_associated_SNPs_94165 3 0 1 0 2 SDHC chr1:161293460 5'GT 161293460 Upstream 35bp
chr2 95941799 95941799 1 + G C CESC 95941798 + 95941778 95941818 41 GCCACCGGCGCTGCGGGGGACGAGTGAAGACAGAGCACAAG GCCACCGGCGCTGCGGGGGACCAGTGAAGACAGAGCACAAG < 41bp 0.70510411526513 0.378120413539075 0.6106492 0.40385363 prediction 0.410208230530259 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95941798 chr2:95941799 nonsynonymous SNV 0.150 1 22 hm5C_associated_SNPs_94166 0 0 0 0 1 PROM2 chr2:95941880 5'GT 95941880 Upstream 82bp
chr10 135346307 135346307 1 + C T SKCM 135346304 + 135346284 135346324 41 TGTCTGAAAGGGTGAAGGAGCACCATCAATCTCTGGACCCC TGTCTGAAAGGGTGAAGGAGCACTATCAATCTCTGGACCCC < 41bp 0.705101997154652 0.485763891234052 0.15305659 0.05955708 prediction 0.410203994309304 Functional Loss - CYP2E1 ENSG00000130649 CDS Human protein_coding chr10:135346304 chr10:135346307 nonsynonymous SNV 0.068 1 24 hm5C_associated_SNPs_94170 0 0 0 0 2 CYP2E1 chr10:135346216 3'AG 135346216 Downstream 92bp
chr10 135346307 135346307 1 + C T SKCM 135346304 + 135346284 135346324 41 TGTCTGAAAGGGTGAAGGAGCACCATCAATCTCTGGACCCC TGTCTGAAAGGGTGAAGGAGCACTATCAATCTCTGGACCCC < 41bp 0.705101997154652 0.485763891234052 0.15305659 0.05955708 prediction 0.410203994309304 Functional Loss - CYP2E1 ENSG00000130649 CDS Human protein_coding chr10:135346304 chr10:135346307 nonsynonymous SNV 0.068 1 24 hm5C_associated_SNPs_94170 0 0 0 0 2 CYP2E1 chr10:135346372 5'GT 135346372 Upstream 66bp
chr13 25353881 25353881 1 + G A SKCM 25353878 + 25353858 25353898 41 TTTCGAACAGTTAAGCATTGCTGGAAAAGTAAGCACTTTGC TTTCGAACAGTTAAGCATTGCTGAAAAAGTAAGCACTTTGC < 41bp 0.705101833086165 0.485661575980779 0.4508662 0.31003964 prediction 0.41020366617233 Functional Loss - RNF17 ENSG00000132972 CDS Human protein_coding chr13:25353878 chr13:25353881 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_94171 0 0 0 1 2 RNF17 chr13:25353805 3'AG 25353805 Downstream 77bp
chr13 25353881 25353881 1 + G A SKCM 25353878 + 25353858 25353898 41 TTTCGAACAGTTAAGCATTGCTGGAAAAGTAAGCACTTTGC TTTCGAACAGTTAAGCATTGCTGAAAAAGTAAGCACTTTGC < 41bp 0.705101833086165 0.485661575980779 0.4508662 0.31003964 prediction 0.41020366617233 Functional Loss - RNF17 ENSG00000132972 CDS Human protein_coding chr13:25353878 chr13:25353881 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_94171 0 0 0 1 2 RNF17 chr13:25353885 5'GT 25353885 Upstream 5bp
chr8 145736008 145736008 1 + G T BLCA 145736004 + 145735984 145736024 41 ACTGCTGCCTCTGTTGAGGTCGGTGCTGCGCTTCCGCCTCG ACTGCTGCCTCTGTTGAGGTCGGTTCTGCGCTTCCGCCTCG < 41bp 0.727086468692711 0.521984746353616 0.5706461 0.14495149 prediction 0.410203444678191 Functional Loss - MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145736004 chr8:145736008 synonymous SNV . 0 25 hm5C_associated_SNPs_94172 0 0 1 0 2 MFSD3 chr8:145735981 3'AG 145735981 Downstream 28bp
chr8 145736008 145736008 1 + G T BLCA 145736004 + 145735984 145736024 41 ACTGCTGCCTCTGTTGAGGTCGGTGCTGCGCTTCCGCCTCG ACTGCTGCCTCTGTTGAGGTCGGTTCTGCGCTTCCGCCTCG < 41bp 0.727086468692711 0.521984746353616 0.5706461 0.14495149 prediction 0.410203444678191 Functional Loss - MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145736004 chr8:145736008 synonymous SNV . 0 25 hm5C_associated_SNPs_94172 0 0 1 0 2 MFSD3 chr8:145736105 5'GT 145736105 Upstream 98bp
chr16 69375204 69375204 1 + C T UCEC 69375202 + 69375182 69375222 41 TACCAGGGCGTGGTGGTGTACTCCATGGCAGACATCCCTTT TACCAGGGCGTGGTGGTGTACTTCATGGCAGACATCCCTTT < 41bp 0.886026049570696 0.680933055803313 0.9267403 0.10498333 prediction 0.410185987534766 Functional Loss - NIP7 ENSG00000132603 CDS Human protein_coding chr16:69375202 chr16:69375204 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_94173 0 0 1 0 1 NIP7 chr16:69375223 5'GT 69375223 Upstream 20bp
chr1 160393995 160393995 1 + C T CESC 160393992 + 160393972 160394012 41 ATGCAGAAGTACCTTCGGACCACCAAGCAGCAGCCCTACCA ATGCAGAAGTACCTTCGGACCACTAAGCAGCAGCCCTACCA < 41bp 0.784586903555875 0.579494162723114 0.03432384 0.3860512 prediction 0.410185481665522 Functional Loss - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160393992 chr1:160393995 synonymous SNV . 0 24 hm5C_associated_SNPs_94174 0 0 1 0 1 VANGL2 chr1:160394073 5'GT 160394073 Upstream 79bp
chr17 31324540 31324540 1 + T C UCEC 31324539 + 31324519 31324559 41 GAGCCTCAGGGTCTGGGTTACTGGTAAGTAACTTGGGCTGG GAGCCTCAGGGTCTGGGTTACCGGTAAGTAACTTGGGCTGG < 41bp 0.769513265604135 0.564422639753343 0.64614695 0.73475945 prediction 0.410181251701585 Functional Loss - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31324539 chr17:31324540 nonsynonymous SNV 0.439 5 22 hm5C_associated_SNPs_94176 0 0 0 0 2 SPACA3 chr17:31324463 3'AG 31324463 Downstream 78bp
chr17 31324540 31324540 1 + T C UCEC 31324539 + 31324519 31324559 41 GAGCCTCAGGGTCTGGGTTACTGGTAAGTAACTTGGGCTGG GAGCCTCAGGGTCTGGGTTACCGGTAAGTAACTTGGGCTGG < 41bp 0.769513265604135 0.564422639753343 0.64614695 0.73475945 prediction 0.410181251701585 Functional Loss - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31324539 chr17:31324540 nonsynonymous SNV 0.439 5 22 hm5C_associated_SNPs_94176 0 0 0 0 2 SPACA3 chr17:31324541 5'GT 31324541 Upstream 2bp
chr1 156039500 156039500 1 + G A SKCM 156039497 + 156039477 156039517 41 TCTTCCTGGAGACCTCAGCCCTGGACTCTACCAATGTTGAG TCTTCCTGGAGACCTCAGCCCTGAACTCTACCAATGTTGAG < 41bp 0.806562108311894 0.601472662628462 0.24545068 0.14765817 prediction 0.410178891366864 Functional Loss - RAB25 ENSG00000132698 CDS Human protein_coding chr1:156039497 chr1:156039500 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_94178 0 0 0 0 2 RAB25 chr1:156039462 3'AG 156039462 Downstream 39bp
chr1 156039500 156039500 1 + G A SKCM 156039497 + 156039477 156039517 41 TCTTCCTGGAGACCTCAGCCCTGGACTCTACCAATGTTGAG TCTTCCTGGAGACCTCAGCCCTGAACTCTACCAATGTTGAG < 41bp 0.806562108311894 0.601472662628462 0.24545068 0.14765817 prediction 0.410178891366864 Functional Loss - RAB25 ENSG00000132698 CDS Human protein_coding chr1:156039497 chr1:156039500 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_94178 0 0 0 0 2 RAB25 chr1:156039542 5'GT 156039542 Upstream 43bp
chr22 24036564 24036564 1 + G T ESCA 24036560 + 24036540 24036580 41 CTAAGCCTCAACAACTTCTCCTCGGTGCACGTCATCGTCTC CTAAGCCTCAACAACTTCTCCTCGTTGCACGTCATCGTCTC < 41bp 0.708776246220482 0.50369026511167 0.12240559 0.0364573 prediction 0.410171962217623 Functional Loss - RGL4 ENSG00000159496 CDS Human protein_coding chr22:24036560 chr22:24036564 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_94179 0 0 0 0 2 RGL4 chr22:24036534 3'AG 24036534 Downstream 31bp
chr22 24036564 24036564 1 + G T ESCA 24036560 + 24036540 24036580 41 CTAAGCCTCAACAACTTCTCCTCGGTGCACGTCATCGTCTC CTAAGCCTCAACAACTTCTCCTCGTTGCACGTCATCGTCTC < 41bp 0.708776246220482 0.50369026511167 0.12240559 0.0364573 prediction 0.410171962217623 Functional Loss - RGL4 ENSG00000159496 CDS Human protein_coding chr22:24036560 chr22:24036564 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_94179 0 0 0 0 2 RGL4 chr22:24036637 5'GT 24036637 Upstream 74bp
chr7 97833409 97833409 1 + C T rs202016789 97833407 + 97833387 97833427 41 ACGGAGCAGAGCTGGCCGCACTCGGCGCCTTACTCCCGGTT ACGGAGCAGAGCTGGCCGCACTTGGCGCCTTACTCCCGGTT < 41bp 0.705085079999709 0.425126678843902 0.18985695 0.10379994 prediction 0.410170159999417 Functional Loss - LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97833407 chr7:97833409 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_94180 0 0 1 0 1 LMTK2 chr7:97833498 5'GT 97833498 Upstream 90bp
chr7 97833410 97833410 1 + G A rs200807391 97833407 + 97833387 97833427 41 ACGGAGCAGAGCTGGCCGCACTCGGCGCCTTACTCCCGGTT ACGGAGCAGAGCTGGCCGCACTCAGCGCCTTACTCCCGGTT < 41bp 0.705085079999709 0.449959213643604 0.18985695 0.03141582 prediction 0.410170159999417 Functional Loss - LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97833407 chr7:97833410 synonymous SNV . 0 24 hm5C_associated_SNPs_94181 0 0 1 0 1 LMTK2 chr7:97833498 5'GT 97833498 Upstream 89bp
chr1 224922312 224922312 1 + C T COAD 224922309 + 224922289 224922329 41 CTCAGAACTAGCCTACGACCCACCGGTGGTCATGAATGCCG CTCAGAACTAGCCTACGACCCACTGGTGGTCATGAATGCCG < 41bp 0.705082432723909 0.479324079474584 0.036523134 0.1737121 prediction 0.410164865447817 Functional Loss - CNIH3 ENSG00000143786 CDS Human protein_coding chr1:224922309 chr1:224922312 nonsynonymous SNV 0.630 2 24 hm5C_associated_SNPs_94183 0 0 0 0 2 CNIH3 chr1:224922265 3'AG 224922265 Downstream 48bp
chr1 224922312 224922312 1 + C T COAD 224922309 + 224922289 224922329 41 CTCAGAACTAGCCTACGACCCACCGGTGGTCATGAATGCCG CTCAGAACTAGCCTACGACCCACTGGTGGTCATGAATGCCG < 41bp 0.705082432723909 0.479324079474584 0.036523134 0.1737121 prediction 0.410164865447817 Functional Loss - CNIH3 ENSG00000143786 CDS Human protein_coding chr1:224922309 chr1:224922312 nonsynonymous SNV 0.630 2 24 hm5C_associated_SNPs_94183 0 0 0 0 2 CNIH3 chr1:224922408 5'GT 224922408 Upstream 97bp
chr16 67116119 67116119 1 + G T LUSC 67116116 + 67116096 67116136 41 TATTTCATGTATTCTGACAGCAGGAGGATGCATTAGCACAA TATTTCATGTATTCTGACAGCAGTAGGATGCATTAGCACAA < 41bp 0.705081927046119 0.333861183665518 0.8233608 0.37234756 prediction 0.410163854092239 Functional Loss - CBFB ENSG00000067955 CDS Human protein_coding chr16:67116116 chr16:67116119 stopgain 1.000 1 24 hm5C_associated_SNPs_94184 0 0 1 0 2 CBFB chr16:67116116 3'AG 67116116 Downstream 4bp
chr16 67116119 67116119 1 + G T LUSC 67116116 + 67116096 67116136 41 TATTTCATGTATTCTGACAGCAGGAGGATGCATTAGCACAA TATTTCATGTATTCTGACAGCAGTAGGATGCATTAGCACAA < 41bp 0.705081927046119 0.333861183665518 0.8233608 0.37234756 prediction 0.410163854092239 Functional Loss - CBFB ENSG00000067955 CDS Human protein_coding chr16:67116116 chr16:67116119 stopgain 1.000 1 24 hm5C_associated_SNPs_94184 0 0 1 0 2 CBFB chr16:67116211 5'GT 67116211 Upstream 93bp
chr14 21468304 21468304 1 + T C rs140813455 21468303 + 21468283 21468323 41 AGCAAGTGAGAGAAATTCTTCTGGTGATGCTGATTCAGCTC AGCAAGTGAGAGAAATTCTTCCGGTGATGCTGATTCAGCTC < 41bp 0.766829360500368 0.561747937545385 0.2137771 0.25842994 prediction 0.410162845909965 Functional Loss - SLC39A2 ENSG00000165794 CDS Human protein_coding chr14:21468303 chr14:21468304 synonymous SNV . 0 22 hm5C_associated_SNPs_94185 0 0 0 0 3 SLC39A2 chr14:21468275 3'AG 21468275 Downstream 30bp
chr14 21468304 21468304 1 + T C rs140813455 21468303 + 21468283 21468323 41 AGCAAGTGAGAGAAATTCTTCTGGTGATGCTGATTCAGCTC AGCAAGTGAGAGAAATTCTTCCGGTGATGCTGATTCAGCTC < 41bp 0.766829360500368 0.561747937545385 0.2137771 0.25842994 prediction 0.410162845909965 Functional Loss - SLC39A2 ENSG00000165794 CDS Human protein_coding chr14:21468303 chr14:21468304 synonymous SNV . 0 22 hm5C_associated_SNPs_94185 0 0 0 0 3 SLC39A2 chr14:21468280 3'AG 21468280 Downstream 25bp
chr14 21468304 21468304 1 + T C rs140813455 21468303 + 21468283 21468323 41 AGCAAGTGAGAGAAATTCTTCTGGTGATGCTGATTCAGCTC AGCAAGTGAGAGAAATTCTTCCGGTGATGCTGATTCAGCTC < 41bp 0.766829360500368 0.561747937545385 0.2137771 0.25842994 prediction 0.410162845909965 Functional Loss - SLC39A2 ENSG00000165794 CDS Human protein_coding chr14:21468303 chr14:21468304 synonymous SNV . 0 22 hm5C_associated_SNPs_94185 0 0 0 0 3 SLC39A2 chr14:21468325 5'GT 21468325 Upstream 22bp
chr1 215753270 215753270 1 + G A UCEC 215753267 + 215753247 215753287 41 AACAGGATTTCCTGTGGATCCACGAAAGGTGCTAATAGTAG AACAGGATTTCCTGTGGATCCACAAAAGGTGCTAATAGTAG < 41bp 0.776790586215735 0.571709868407014 0.054600447 0.05225104 prediction 0.410161435617443 Functional Loss - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215753267 chr1:215753270 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_94186 0 0 1 0 2 KCTD3 chr1:215753252 3'AG 215753252 Downstream 19bp
chr1 215753270 215753270 1 + G A UCEC 215753267 + 215753247 215753287 41 AACAGGATTTCCTGTGGATCCACGAAAGGTGCTAATAGTAG AACAGGATTTCCTGTGGATCCACAAAAGGTGCTAATAGTAG < 41bp 0.776790586215735 0.571709868407014 0.054600447 0.05225104 prediction 0.410161435617443 Functional Loss - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215753267 chr1:215753270 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_94186 0 0 1 0 2 KCTD3 chr1:215753342 5'GT 215753342 Upstream 73bp
chr9 96863864 96863864 1 + G T SARC 96863861 + 96863841 96863881 41 TTTTTAGAAAGAGCTTAATTCCCGAGATGGAGCTTGGGAAA TTTTTAGAAAGAGCTTAATTCCCTAGATGGAGCTTGGGAAA < 41bp 0.705078047791267 0.319663331985812 0.18014967 0.11735162 prediction 0.410156095582533 Functional Loss - PTPDC1 ENSG00000158079 CDS Human protein_coding chr9:96863861 chr9:96863864 nonsynonymous SNV 0.983 2 24 hm5C_associated_SNPs_94191 0 0 1 0 1 PTPDC1 chr9:96863848 3'AG 96863848 Downstream 17bp
chr18 28989504 28989504 1 + G T COAD 28989500 + 28989480 28989520 41 TTTGCTCCTGTGCCTGAGGGCGGAGAAGGAGTGATGCAGTC TTTGCTCCTGTGCCTGAGGGCGGATAAGGAGTGATGCAGTC < 41bp 0.728888886485077 0.523812453185367 0.7066725 0.31655616 prediction 0.410152866599419 Functional Loss - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28989500 chr18:28989504 stopgain 0.981 0 25 hm5C_associated_SNPs_94195 0 0 0 0 1 DSG4 chr18:28989415 3'AG 28989415 Downstream 90bp
chr1 205033498 205033498 1 + C T GBM 205033496 + 205033476 205033516 41 CCCGTGAGGCGTCTGATCCCCGCGGCCCGCGGGGGAGAGAT CCCGTGAGGCGTCTGATCCCCGTGGCCCGCGGGGGAGAGAT < 41bp 0.705071568267989 0.437921807867844 0.7820407 0.59931153 prediction 0.410143136535978 Functional Loss - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205033496 chr1:205033498 nonsynonymous SNV 0.794 2 23 hm5C_associated_SNPs_94199 0 0 0 0 1 CNTN2 chr1:205033450 3'AG 205033450 Downstream 49bp
chr17 47246206 47246206 1 + C T LGG 47246204 + 47246184 47246224 41 GTCAACTTCTTCCTGGCCCACACGGAGCGACTCCAAAGAGT GTCAACTTCTTCCTGGCCCACATGGAGCGACTCCAAAGAGT < 41bp 0.705069823064874 0.434716067637296 0.0018713772 0.0042811334 prediction 0.410139646129747 Functional Loss - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47246204 chr17:47246206 nonsynonymous SNV 0.960 4 23 hm5C_associated_SNPs_94201 0 0 0 0 1 B4GALNT2 chr17:47246262 5'GT 47246262 Upstream 57bp
chr17 47246207 47246207 1 + G A UCEC 47246204 + 47246184 47246224 41 GTCAACTTCTTCCTGGCCCACACGGAGCGACTCCAAAGAGT GTCAACTTCTTCCTGGCCCACACAGAGCGACTCCAAAGAGT < 41bp 0.705069823064874 0.452308238613077 0.0018713772 0.0007253289 prediction 0.410139646129747 Functional Loss - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47246204 chr17:47246207 synonymous SNV . 0 24 hm5C_associated_SNPs_94202 0 0 0 0 1 B4GALNT2 chr17:47246262 5'GT 47246262 Upstream 56bp
chr11 44219485 44219485 1 + G T STAD 44219483 + 44219463 44219503 41 GACCGAGTAGAGAGCCTCTTCCGGGTCATCACTGAAGTGTC GACCGAGTAGAGAGCCTCTTCCTGGTCATCACTGAAGTGTC < 41bp 0.705065878009593 0.345837108085003 0.89815557 0.034551293 prediction 0.410131756019186 Functional Loss - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44219483 chr11:44219485 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_94207 0 0 1 0 1 EXT2 chr11:44219568 5'GT 44219568 Upstream 84bp
chr10 103361088 103361088 1 + C T rs7874 103361085 + 103361065 103361105 41 TGCATCATTGTCAGAACAACCAACAAGAAGTGAGTAGCGTG TGCATCATTGTCAGAACAACCAATAAGAAGTGAGTAGCGTG < 41bp 0.752460257103172 0.547399665714977 0.09182182 0.8882731 prediction 0.41012118277639 Functional Loss - DPCD ENSG00000166171 CDS Human protein_coding chr10:103361085 chr10:103361088 synonymous SNV . 0 24 hm5C_associated_SNPs_94208 0 0 0 0 1 DPCD chr10:103361093 5'GT 103361093 Upstream 6bp
chr16 2087886 2087886 1 + G A COAD 2087883 + 2087863 2087903 41 AGCGGCCTCCACCTGAGCCCCACGGCGGCCGAGGCCAAGGA AGCGGCCTCCACCTGAGCCCCACAGCGGCCGAGGCCAAGGA < 41bp 0.705059362949025 0.463095254584638 0.2840826 0.22180009 prediction 0.410118725898051 Functional Loss - SLC9A3R2 ENSG00000065054 CDS Human protein_coding chr16:2087883 chr16:2087886 synonymous SNV . 0 24 hm5C_associated_SNPs_94209 0 0 0 0 2 SLC9A3R2 chr16:2087827 3'AG 2087827 Downstream 60bp
chr16 2087886 2087886 1 + G A COAD 2087883 + 2087863 2087903 41 AGCGGCCTCCACCTGAGCCCCACGGCGGCCGAGGCCAAGGA AGCGGCCTCCACCTGAGCCCCACAGCGGCCGAGGCCAAGGA < 41bp 0.705059362949025 0.463095254584638 0.2840826 0.22180009 prediction 0.410118725898051 Functional Loss - SLC9A3R2 ENSG00000065054 CDS Human protein_coding chr16:2087883 chr16:2087886 synonymous SNV . 0 24 hm5C_associated_SNPs_94209 0 0 0 0 2 SLC9A3R2 chr16:2087860 3'AG 2087860 Downstream 27bp
chr12 50344953 50344953 1 + G A OV 50344950 + 50344930 50344970 41 AGATCACGCCAGCAGACATCCGCGGGGACCTGGCTGTCAAT AGATCACGCCAGCAGACATCCGCAGGGACCTGGCTGTCAAT < 41bp 0.829053343704661 0.623996401236174 0.81964856 0.045451403 prediction 0.410113884936973 Functional Loss - AQP2 ENSG00000167580 CDS Human protein_coding chr12:50344950 chr12:50344953 nonsynonymous SNV 0.708 5 24 hm5C_associated_SNPs_94210 0 0 0 0 1 AQP2 chr12:50344973 5'GT 50344973 Upstream 21bp
chr14 74325597 74325597 1 + G A LIHC 74325594 + 74325574 74325614 41 TCAAAGAGTGGTATTGAATTCTCGACCTGGTATGTATTTGC TCAAAGAGTGGTATTGAATTCTCAACCTGGTATGTATTTGC < 41bp 0.770232621579173 0.565175877925707 0.19056007 0.05054429 prediction 0.410113487306933 Functional Loss - PTGR2 ENSG00000140043;ENSG00000258653 CDS Human other chr14:74325594 chr14:74325597 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_94211 0 0 1 0 2 PTGR2 chr14:74325519 3'AG 74325519 Downstream 79bp
chr14 74325597 74325597 1 + G A LIHC 74325594 + 74325574 74325614 41 TCAAAGAGTGGTATTGAATTCTCGACCTGGTATGTATTTGC TCAAAGAGTGGTATTGAATTCTCAACCTGGTATGTATTTGC < 41bp 0.770232621579173 0.565175877925707 0.19056007 0.05054429 prediction 0.410113487306933 Functional Loss - PTGR2 ENSG00000140043;ENSG00000258653 CDS Human other chr14:74325594 chr14:74325597 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_94211 0 0 1 0 2 PTGR2 chr14:74325602 5'GT 74325602 Upstream 6bp
chr11 210610 210610 1 + C T LGG 210607 + 210587 210627 41 ACCGACACCTGGGGACCCTTCTCCGGCACTGTGTGATGATC ACCGACACCTGGGGACCCTTCTCTGGCACTGTGTGATGATC < 41bp 0.705056498704226 0.469085829909466 0.10574213 0.029616088 prediction 0.410112997408452 Functional Loss - RIC8A ENSG00000177963 CDS Human protein_coding chr11:210607 chr11:210610 nonsynonymous SNV 0.897 2 24 hm5C_associated_SNPs_94212 0 0 1 0 2 RIC8A chr11:210571 3'AG 210571 Downstream 40bp
chr11 210610 210610 1 + C T LGG 210607 + 210587 210627 41 ACCGACACCTGGGGACCCTTCTCCGGCACTGTGTGATGATC ACCGACACCTGGGGACCCTTCTCTGGCACTGTGTGATGATC < 41bp 0.705056498704226 0.469085829909466 0.10574213 0.029616088 prediction 0.410112997408452 Functional Loss - RIC8A ENSG00000177963 CDS Human protein_coding chr11:210607 chr11:210610 nonsynonymous SNV 0.897 2 24 hm5C_associated_SNPs_94212 0 0 1 0 2 RIC8A chr11:210662 5'GT 210662 Upstream 53bp
chr16 85111074 85111074 1 + G A COAD 85111071 + 85111051 85111091 41 CCGGAGTCCCGGGAGAAGCCCGCGGGCAGCATCGACTCCTA CCGGAGTCCCGGGAGAAGCCCGCAGGCAGCATCGACTCCTA < 41bp 0.83111798334123 0.626062756040722 0.88230747 0.25893673 prediction 0.410110454601015 Functional Loss - KIAA0513 ENSG00000135709 CDS Human protein_coding chr16:85111071 chr16:85111074 synonymous SNV . 0 24 hm5C_associated_SNPs_94213 0 0 1 0 1 KIAA0513 chr16:85111031 3'AG 85111031 Downstream 44bp
chr18 28918380 28918380 1 + C T STAD 28918378 + 28918358 28918398 41 CCAAGGAACAGTACAATATGCTCGGAGGAAAATACCAAGGA CCAAGGAACAGTACAATATGCTTGGAGGAAAATACCAAGGA < 41bp 0.705054692880841 0.424128319343164 0.028564155 0.06254411 prediction 0.410109385761683 Functional Loss - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28918378 chr18:28918380 synonymous SNV . 0 23 hm5C_associated_SNPs_94214 0 0 0 0 1 DSG1 chr18:28918417 5'GT 28918417 Upstream 38bp
chr12 13229038 13229038 1 + G A SKCM 13229035 + 13229015 13229055 41 CTGCGTTCCCCTCCATCCTTCTGGATCTGGCCAACACCACC CTGCGTTCCCCTCCATCCTTCTGAATCTGGCCAACACCACC < 41bp 0.829151941850424 0.624103389761534 0.10498649 0.06885794 prediction 0.41009710417778 Functional Loss - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13229035 chr12:13229038 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_94218 0 0 0 0 1 FAM234B chr12:13228960 3'AG 13228960 Downstream 79bp
chr1 1114699 1114699 1 + G A rs113596156 1114696 + 1114676 1114716 41 GCCAAGGATCCAGCAGAGGCCTCGGGCTCGAGTCTCAGGTG GCCAAGGATCCAGCAGAGGCCTCAGGCTCGAGTCTCAGGTG < 41bp 0.822366346390998 0.617317971128351 0.30188388 0.5994634 prediction 0.410096750525294 Functional Loss - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1114696 chr1:1114699 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_94219 0 0 0 0 1 TTLL10 chr1:1114713 5'GT 1114713 Upstream 15bp
chr1 3607428 3607428 1 + G A rs562478603 3607425 + 3607405 3607445 41 CAGATCCATGCCTCGTCCCACGGGACACCAGTTCCCTGGCG CAGATCCATGCCTCGTCCCACGGAACACCAGTTCCCTGGCG < 41bp 0.711108354506918 0.506060443750532 0.9026916 0.7270011 prediction 0.410095821512772 Functional Loss - TP73 ENSG00000078900 UTR5 Human protein_coding chr1:3607425 chr1:3607428 . . 0 24 hm5C_associated_SNPs_94220 0 0 0 0 1 TP73 chr1:3607508 5'GT 3607508 Upstream 81bp
chr16 11219945 11219945 1 + G T LUAD 11219943 + 11219923 11219963 41 GCTTCTACGACCAGGGGCGCCGGGGCAGCAGCGACCCCACA GCTTCTACGACCAGGGGCGCCGTGGCAGCAGCGACCCCACA < 41bp 0.70504772098668 0.335788222790627 0.88400006 0.4450628 prediction 0.41009544197336 Functional Loss - CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11219943 chr16:11219945 synonymous SNV . 0 23 hm5C_associated_SNPs_94221 0 0 1 0 1 CLEC16A chr16:11220003 5'GT 11220003 Upstream 59bp
chr19 45593409 45593409 1 + C T rs575528129 45593406 + 45593386 45593426 41 TGAACATTCCCGTGCCTGTGCTCCGGCTGCCCCGGGGCCCT TGAACATTCCCGTGCCTGTGCTCTGGCTGCCCCGGGGCCCT < 41bp 0.758833862932638 0.553786257630658 0.23342869 0.148799 prediction 0.410095210603959 Functional Loss - GEMIN7 ENSG00000142252 CDS Human antisense chr19:45593406 chr19:45593409 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_94222 0 0 1 0 1 LOC105372419 chr19:45593365 3'AG 45593365 Downstream 45bp
chr14 74486224 74486224 1 + G T UCEC 74486220 + 74486200 74486240 41 GACAAAAAGAAAGGCAAGAGCAAAGGCAAAGACACGAAGTA GACAAAAAGAAAGGCAAGAGCAAATGCAAAGACACGAAGTA < 41bp 0.708215929603496 0.503168519655101 0.6014167 0.8920865 prediction 0.41009481989679 Functional Loss - BBOF1 ENSG00000119636 CDS Human protein_coding chr14:74486220 chr14:74486224 nonsynonymous SNV 0.516 2 25 hm5C_associated_SNPs_94223 0 0 0 0 1 BBOF1 chr14:74486237 5'GT 74486237 Upstream 14bp
chr2 238934009 238934009 1 + G A UCEC 238934006 + 238933986 238934026 41 CCCAAAGTGAAATGCCTGACCAAGATCTGGCACCCCAACAT CCCAAAGTGAAATGCCTGACCAAAATCTGGCACCCCAACAT < 41bp 0.807876685714805 0.602831237542844 0.20108485 0.07792452 prediction 0.410090896343921 Functional Loss - UBE2F ENSG00000184182 CDS Human protein_coding chr2:238934006 chr2:238934009 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_94226 0 0 0 0 2 UBE2F chr2:238933983 3'AG 238933983 Downstream 27bp
chr2 238934009 238934009 1 + G A UCEC 238934006 + 238933986 238934026 41 CCCAAAGTGAAATGCCTGACCAAGATCTGGCACCCCAACAT CCCAAAGTGAAATGCCTGACCAAAATCTGGCACCCCAACAT < 41bp 0.807876685714805 0.602831237542844 0.20108485 0.07792452 prediction 0.410090896343921 Functional Loss - UBE2F ENSG00000184182 CDS Human protein_coding chr2:238934006 chr2:238934009 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_94226 0 0 0 0 2 UBE2F chr2:238934053 5'GT 238934053 Upstream 45bp
chr17 79954652 79954652 1 + G T LUAD 79954649 + 79954629 79954669 41 CAAGCCAAAGAAGTCCAAGTCGGGCCAGGATCCCCAGCAGG CAAGCCAAAGAAGTCCAAGTCGGTCCAGGATCCCCAGCAGG < 41bp 0.705045198188152 0.293929992568461 0.8852232 0.19297627 prediction 0.410090396376304 Functional Loss - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79954649 chr17:79954652 nonsynonymous SNV 0.252 2 24 hm5C_associated_SNPs_94227 0 0 1 0 1 ASPSCR1 chr17:79954722 5'GT 79954722 Upstream 71bp
chr2 101619256 101619256 1 + G A UCEC 101619253 + 101619233 101619273 41 GAATACACCATCAACATTCACAAGCGCATCCATGGAGTGTG GAATACACCATCAACATTCACAAACGCATCCATGGAGTGTG < 41bp 0.705042732375877 0.469463086614036 0.292052 0.25141764 prediction 0.410085464751754 Functional Loss - RPL31 ENSG00000071082 CDS Human protein_coding chr2:101619253 chr2:101619256 synonymous SNV . 0 24 hm5C_associated_SNPs_94230 0 0 1 0 1 RPL31 chr2:101619164 3'AG 101619164 Downstream 93bp
chr1 27268302 27268302 1 + G A OV 27268299 + 27268279 27268319 41 GAACGGCAGCCTTGACTCCCCAGGGAAGCAGGTGAGATGGA GAACGGCAGCCTTGACTCCCCAGAGAAGCAGGTGAGATGGA < 41bp 0.822614171977973 0.617572006380625 0.90151775 0.8335782 prediction 0.410084331194696 Functional Loss - NUDC ENSG00000090273 CDS Human protein_coding chr1:27268299 chr1:27268302 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_94231 0 0 1 0 2 NUDC chr1:27268244 3'AG 27268244 Downstream 59bp
chr1 27268302 27268302 1 + G A OV 27268299 + 27268279 27268319 41 GAACGGCAGCCTTGACTCCCCAGGGAAGCAGGTGAGATGGA GAACGGCAGCCTTGACTCCCCAGAGAAGCAGGTGAGATGGA < 41bp 0.822614171977973 0.617572006380625 0.90151775 0.8335782 prediction 0.410084331194696 Functional Loss - NUDC ENSG00000090273 CDS Human protein_coding chr1:27268299 chr1:27268302 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_94231 0 0 1 0 2 NUDC chr1:27268309 5'GT 27268309 Upstream 8bp
chr12 54338873 54338873 1 + G A CESC 54338870 + 54338850 54338890 41 CTAAGGTGCAGCTGAAGGAGCTAGAGAAGGAATACGCGGCT CTAAGGTGCAGCTGAAGGAGCTAAAGAAGGAATACGCGGCT < 41bp 0.806451427837149 0.601410070793464 0.21258724 0.28742605 prediction 0.41008271408737 Functional Loss - HOXC13 ENSG00000123364 CDS Human protein_coding chr12:54338870 chr12:54338873 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_94232 0 0 0 0 1 HOXC13 chr12:54338784 3'AG 54338784 Downstream 90bp
chr12 72332809 72332809 1 + C T LUSC 72332807 + 72332787 72332827 41 GTTTTCCAGTAAATACTGGGCACGGAGAGGGTTTTCCCTGG GTTTTCCAGTAAATACTGGGCATGGAGAGGGTTTTCCCTGG < 41bp 0.813258249563346 0.608218261900261 0.33390266 0.3329755 prediction 0.410079975326169 Functional Loss - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72332807 chr12:72332809 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_94233 0 0 0 0 1 TPH2 chr12:72332871 5'GT 72332871 Upstream 63bp
chr21 30724100 30724100 1 + G A GBM 30724097 + 30724077 30724117 41 ATCAAGGATGAAGTTTAACACAGGAATGAGAAGTAGAGCAC ATCAAGGATGAAGTTTAACACAGAAATGAGAAGTAGAGCAC < 41bp 0.725353268571746 0.520314223866086 0.7805399 0.40774924 prediction 0.410078089411319 Functional Loss - BACH1;BACH1-IT2 ENSG00000248476 ncRNA_exonic Human sense_intronic chr21:30724097 chr21:30724100 . . 0 24 hm5C_associated_SNPs_94235 0 0 1 0 1 BACH1;BACH1-IT2 chr21:30724134 5'GT 30724134 Upstream 35bp
chr1 158226819 158226819 1 + G T UCEC 158226817 + 158226797 158226837 41 CTGTCCTGTCGGGTGAAGCACAGCAGTCTAGAGGGCCAGGA CTGTCCTGTCGGGTGAAGCACATCAGTCTAGAGGGCCAGGA < 41bp 0.915643630933336 0.710605475297921 0.57829857 0.3491732 prediction 0.41007631127083 Functional Loss - CD1A ENSG00000158477 CDS Human protein_coding chr1:158226817 chr1:158226819 nonsynonymous SNV 0.780 4 23 hm5C_associated_SNPs_94237 0 0 0 0 1 CD1A chr1:158226854 5'GT 158226854 Upstream 36bp
chr11 117975456 117975456 1 + G T STAD 117975452 + 117975432 117975472 41 CTGCAGGTGCTGGACTCGGCCACAGGGAACTGGTTCTCTGC CTGCAGGTGCTGGACTCGGCCACATGGAACTGGTTCTCTGC < 41bp 0.705181863071758 0.500143761712536 0.22345027 0.22630003 prediction 0.410076202718443 Functional Loss - TMPRSS4 ENSG00000137648 CDS Human protein_coding chr11:117975452 chr11:117975456 nonsynonymous SNV 0.652 1 25 hm5C_associated_SNPs_94238 0 0 0 0 2 TMPRSS4 chr11:117975406 3'AG 117975406 Downstream 51bp
chr11 117975456 117975456 1 + G T STAD 117975452 + 117975432 117975472 41 CTGCAGGTGCTGGACTCGGCCACAGGGAACTGGTTCTCTGC CTGCAGGTGCTGGACTCGGCCACATGGAACTGGTTCTCTGC < 41bp 0.705181863071758 0.500143761712536 0.22345027 0.22630003 prediction 0.410076202718443 Functional Loss - TMPRSS4 ENSG00000137648 CDS Human protein_coding chr11:117975452 chr11:117975456 nonsynonymous SNV 0.652 1 25 hm5C_associated_SNPs_94238 0 0 0 0 2 TMPRSS4 chr11:117975535 5'GT 117975535 Upstream 80bp
chr18 28991266 28991266 1 + G T LUSC 28991263 + 28991243 28991283 41 ATCGGGAGTGGAGCTCAACACAGGTATGGGGACAGCCGTTG ATCGGGAGTGGAGCTCAACACAGTTATGGGGACAGCCGTTG < 41bp 0.941539854350618 0.736503884278695 0.5075133 0.10299179 prediction 0.410071940143846 Functional Loss - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28991263 chr18:28991266 nonsynonymous SNV 0.114 2 24 hm5C_associated_SNPs_94240 0 0 0 0 1 DSG4 chr18:28991194 3'AG 28991194 Downstream 73bp
chr17 48696314 48696314 1 + T C LUAD 48696313 + 48696293 48696333 41 ACAGCCCCAAGCCTGGGGCTCTGCACCCAGCGGCCCACGCG ACAGCCCCAAGCCTGGGGCTCCGCACCCAGCGGCCCACGCG < 41bp 0.759015746133285 0.553983803762724 0.3855358 0.26252413 prediction 0.410063884741122 Functional Loss - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48696313 chr17:48696314 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_94242 0 0 0 0 1 CACNA1G chr17:48696369 5'GT 48696369 Upstream 56bp
chr9 90497819 90497819 1 + G A UCEC 90497816 + 90497796 90497836 41 GCTTGAAGGCGATGGGAAATCTCGTCATCCCTCTAGGGAAG GCTTGAAGGCGATGGGAAATCTCATCATCCCTCTAGGGAAG < 41bp 0.814866845920175 0.609836803119814 0.034377813 0.030785829 prediction 0.410060085600721 Functional Loss - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90497816 chr9:90497819 nonsynonymous SNV 0.042 1 24 hm5C_associated_SNPs_94244 0 0 0 0 1 SPATA31E1 chr9:90497901 5'GT 90497901 Upstream 83bp
chr4 174216643 174216643 1 + G A COAD 174216640 + 174216620 174216660 41 AAGGGAAGGTTTAATTCAAGCACGAAGTATTGGTGCTCAGA AAGGGAAGGTTTAATTCAAGCACAAAGTATTGGTGCTCAGA < 41bp 0.767530764067683 0.562504649977251 0.24719116 0.105826855 prediction 0.410052228180864 Functional Loss - GALNT7 ENSG00000109586 CDS Human protein_coding chr4:174216640 chr4:174216643 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_94246 0 0 1 0 2 GALNT7 chr4:174216547 3'AG 174216547 Downstream 97bp
chr4 174216643 174216643 1 + G A COAD 174216640 + 174216620 174216660 41 AAGGGAAGGTTTAATTCAAGCACGAAGTATTGGTGCTCAGA AAGGGAAGGTTTAATTCAAGCACAAAGTATTGGTGCTCAGA < 41bp 0.767530764067683 0.562504649977251 0.24719116 0.105826855 prediction 0.410052228180864 Functional Loss - GALNT7 ENSG00000109586 CDS Human protein_coding chr4:174216640 chr4:174216643 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_94246 0 0 1 0 2 GALNT7 chr4:174216677 5'GT 174216677 Upstream 35bp
chr1 15813888 15813888 1 + T C OV 15813887 + 15813867 15813907 41 TGCAACTACTACTACAAGCCCTCCATCTTCACGCGGGTCTC TGCAACTACTACTACAAGCCCCCCATCTTCACGCGGGTCTC < 41bp 0.70502584437582 0.425464312055272 0.6361368 0.002438128 prediction 0.410051688751641 Functional Loss - CELA2B ENSG00000215704 CDS Human protein_coding chr1:15813887 chr1:15813888 nonsynonymous SNV 0.254 4 22 hm5C_associated_SNPs_94247 0 0 0 0 1 CELA2B chr1:15813932 5'GT 15813932 Upstream 45bp
chr1 16064435 16064435 1 + G T SARC 16064431 + 16064411 16064451 41 TCTGCTCCCATAGATCAAAACGCAGCTGCAAGCTCAGACAG TCTGCTCCCATAGATCAAAACGCATCTGCAAGCTCAGACAG < 41bp 0.726613767588236 0.521595573190014 0.14340413 0.0470607 prediction 0.410036388796446 Functional Loss - SLC25A34 ENSG00000162461 CDS Human protein_coding chr1:16064431 chr1:16064435 nonsynonymous SNV 0.988 1 25 hm5C_associated_SNPs_94251 0 0 0 0 2 SLC25A34 chr1:16064424 3'AG 16064424 Downstream 12bp
chr1 16064435 16064435 1 + G T SARC 16064431 + 16064411 16064451 41 TCTGCTCCCATAGATCAAAACGCAGCTGCAAGCTCAGACAG TCTGCTCCCATAGATCAAAACGCATCTGCAAGCTCAGACAG < 41bp 0.726613767588236 0.521595573190014 0.14340413 0.0470607 prediction 0.410036388796446 Functional Loss - SLC25A34 ENSG00000162461 CDS Human protein_coding chr1:16064431 chr1:16064435 nonsynonymous SNV 0.988 1 25 hm5C_associated_SNPs_94251 0 0 0 0 2 SLC25A34 chr1:16064489 5'GT 16064489 Upstream 55bp
chr1 46876526 46876526 1 + G A UCEC 46876523 + 46876503 46876543 41 TTTCCTCAGCAACATGAAGTCTCGGTAAGGGTTCTTCTGTG TTTCCTCAGCAACATGAAGTCTCAGTAAGGGTTCTTCTGTG < 41bp 0.808632418296862 0.603616884831642 0.16926211 0.042997897 prediction 0.410031066930439 Functional Loss - FAAH ENSG00000117480 CDS Human protein_coding chr1:46876523 chr1:46876526 nonsynonymous SNV 0.835 1 24 hm5C_associated_SNPs_94254 0 0 1 0 2 FAAH chr1:46876486 3'AG 46876486 Downstream 41bp
chr1 46876526 46876526 1 + G A UCEC 46876523 + 46876503 46876543 41 TTTCCTCAGCAACATGAAGTCTCGGTAAGGGTTCTTCTGTG TTTCCTCAGCAACATGAAGTCTCAGTAAGGGTTCTTCTGTG < 41bp 0.808632418296862 0.603616884831642 0.16926211 0.042997897 prediction 0.410031066930439 Functional Loss - FAAH ENSG00000117480 CDS Human protein_coding chr1:46876523 chr1:46876526 nonsynonymous SNV 0.835 1 24 hm5C_associated_SNPs_94254 0 0 1 0 2 FAAH chr1:46876526 5'GT 46876526 Upstream 1bp
chr19 58697121 58697121 1 + G T GBM 58697118 + 58697098 58697138 41 ATGTAACACTGGGTTTTACCCCGGAAGAGTGGGGACTGCTG ATGTAACACTGGGTTTTACCCCGTAAGAGTGGGGACTGCTG < 41bp 0.705014352413418 0.350996406762129 0.39869446 0.10463449 prediction 0.410028704826837 Functional Loss - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58697118 chr19:58697121 stopgain 0.153 0 24 hm5C_associated_SNPs_94258 0 0 1 0 3 ZNF274 chr19:58697064 3'AG 58697064 Downstream 58bp
chr19 58697121 58697121 1 + G T GBM 58697118 + 58697098 58697138 41 ATGTAACACTGGGTTTTACCCCGGAAGAGTGGGGACTGCTG ATGTAACACTGGGTTTTACCCCGTAAGAGTGGGGACTGCTG < 41bp 0.705014352413418 0.350996406762129 0.39869446 0.10463449 prediction 0.410028704826837 Functional Loss - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58697118 chr19:58697121 stopgain 0.153 0 24 hm5C_associated_SNPs_94258 0 0 1 0 3 ZNF274 chr19:58697079 3'AG 58697079 Downstream 43bp
chr19 58697121 58697121 1 + G T GBM 58697118 + 58697098 58697138 41 ATGTAACACTGGGTTTTACCCCGGAAGAGTGGGGACTGCTG ATGTAACACTGGGTTTTACCCCGTAAGAGTGGGGACTGCTG < 41bp 0.705014352413418 0.350996406762129 0.39869446 0.10463449 prediction 0.410028704826837 Functional Loss - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58697118 chr19:58697121 stopgain 0.153 0 24 hm5C_associated_SNPs_94258 0 0 1 0 3 ZNF274 chr19:58697205 5'GT 58697205 Upstream 85bp
chr17 76136924 76136924 1 + G A BLCA 76136921 + 76136901 76136941 41 TGTTCTCCTCACAGCAGGTTCAGGAGAAGTGGCACCTGGTG TGTTCTCCTCACAGCAGGTTCAGAAGAAGTGGCACCTGGTG < 41bp 0.755613270274414 0.550599368880954 0.9354028 0.85343575 prediction 0.41002780278692 Functional Loss - TMC8 ENSG00000167895 CDS Human protein_coding chr17:76136921 chr17:76136924 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_94259 0 0 0 0 1 TMC8 chr17:76136915 3'AG 76136915 Downstream 10bp
chr6 33172479 33172479 1 + G T rs138620921 33172477 + 33172457 33172497 41 GCTCCAGAACCGACTCCGCTCCGCACTGGCCTTGGTCACAG GCTCCAGAACCGACTCCGCTCCTCACTGGCCTTGGTCACAG < 41bp 0.705012579737653 0.351017962064126 0.10966417 0.036899507 prediction 0.410025159475306 Functional Loss - HSD17B8 ENSG00000204228 CDS Human protein_coding chr6:33172477 chr6:33172479 nonsynonymous SNV 0.983 2 23 hm5C_associated_SNPs_94260 0 0 1 0 1 HSD17B8 chr6:33172497 5'GT 33172497 Upstream 19bp
chr5 32724832 32724832 1 + C T SKCM 32724829 + 32724809 32724849 41 ATCATGTGTGCGAGCAGTGACACCATCCGGAGCATCATGCT ATCATGTGTGCGAGCAGTGACACTATCCGGAGCATCATGCT < 41bp 0.705012110302181 0.476321966224073 0.34615746 0.10427195 prediction 0.410024220604362 Functional Loss - NPR3 ENSG00000113389 CDS Human protein_coding chr5:32724829 chr5:32724832 synonymous SNV . 0 24 hm5C_associated_SNPs_94261 0 0 0 0 2 NPR3 chr5:32724804 3'AG 32724804 Downstream 29bp
chr5 32724832 32724832 1 + C T SKCM 32724829 + 32724809 32724849 41 ATCATGTGTGCGAGCAGTGACACCATCCGGAGCATCATGCT ATCATGTGTGCGAGCAGTGACACTATCCGGAGCATCATGCT < 41bp 0.705012110302181 0.476321966224073 0.34615746 0.10427195 prediction 0.410024220604362 Functional Loss - NPR3 ENSG00000113389 CDS Human protein_coding chr5:32724829 chr5:32724832 synonymous SNV . 0 24 hm5C_associated_SNPs_94261 0 0 0 0 2 NPR3 chr5:32724926 5'GT 32724926 Upstream 95bp
chr22 38282794 38282794 1 + C T SKCM 38282792 + 38282772 38282812 41 GACATGATCCACATCGCGGACACCAAGGTCGCCAGGCGTTA GACATGATCCACATCGCGGACATCAAGGTCGCCAGGCGTTA < 41bp 0.705010380504053 0.398254269991935 0.0919894 0.19152778 prediction 0.410020761008105 Functional Loss - EIF3L ENSG00000100129 CDS Human protein_coding chr22:38282792 chr22:38282794 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_94263 0 0 1 0 2 EIF3L chr22:38282772 3'AG 38282772 Downstream 23bp
chr22 38282794 38282794 1 + C T SKCM 38282792 + 38282772 38282812 41 GACATGATCCACATCGCGGACACCAAGGTCGCCAGGCGTTA GACATGATCCACATCGCGGACATCAAGGTCGCCAGGCGTTA < 41bp 0.705010380504053 0.398254269991935 0.0919894 0.19152778 prediction 0.410020761008105 Functional Loss - EIF3L ENSG00000100129 CDS Human protein_coding chr22:38282792 chr22:38282794 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_94263 0 0 1 0 2 EIF3L chr22:38282852 5'GT 38282852 Upstream 59bp
chr22 38282795 38282795 1 + C T SKCM 38282792 + 38282772 38282812 41 GACATGATCCACATCGCGGACACCAAGGTCGCCAGGCGTTA GACATGATCCACATCGCGGACACTAAGGTCGCCAGGCGTTA < 41bp 0.705010380504053 0.4733272280412 0.0919894 0.16438827 prediction 0.410020761008105 Functional Loss - EIF3L ENSG00000100129 CDS Human protein_coding chr22:38282792 chr22:38282795 synonymous SNV . 0 24 hm5C_associated_SNPs_94264 0 0 1 0 2 EIF3L chr22:38282772 3'AG 38282772 Downstream 24bp
chr22 38282795 38282795 1 + C T SKCM 38282792 + 38282772 38282812 41 GACATGATCCACATCGCGGACACCAAGGTCGCCAGGCGTTA GACATGATCCACATCGCGGACACTAAGGTCGCCAGGCGTTA < 41bp 0.705010380504053 0.4733272280412 0.0919894 0.16438827 prediction 0.410020761008105 Functional Loss - EIF3L ENSG00000100129 CDS Human protein_coding chr22:38282792 chr22:38282795 synonymous SNV . 0 24 hm5C_associated_SNPs_94264 0 0 1 0 2 EIF3L chr22:38282852 5'GT 38282852 Upstream 58bp
chr4 48988456 48988456 1 + C T LIHC 48988454 + 48988434 48988474 41 CCTCGCCGCGGCGATGCCCTCGCTGTGGAGAGAAATCCTCT CCTCGCCGCGGCGATGCCCTCGTTGTGGAGAGAAATCCTCT < 41bp 0.79430016557532 0.589289789784319 0.386833 0.30143905 prediction 0.410020751582001 Functional Loss - CWH43 ENSG00000109182 CDS Human protein_coding chr4:48988454 chr4:48988456 synonymous SNV . 0 23 hm5C_associated_SNPs_94265 0 0 0 0 1 CWH43 chr4:48988489 5'GT 48988489 Upstream 34bp
chr1 86047194 86047194 1 + C T SARC 86047191 + 86047171 86047211 41 GACTGCAGCAAAACGCAGCCCTGCGACCACACCAAGGGGCT GACTGCAGCAAAACGCAGCCCTGTGACCACACCAAGGGGCT < 41bp 0.710084558974013 0.505076306045528 0.370468 0.31464085 prediction 0.410016505856969 Functional Loss - CYR61 ENSG00000142871 CDS Human protein_coding chr1:86047191 chr1:86047194 synonymous SNV . 0 24 hm5C_associated_SNPs_94267 0 0 0 0 1 CYR61 chr1:86047261 5'GT 86047261 Upstream 68bp
chr17 40817732 40817732 1 + C T STAD 40817729 + 40817709 40817749 41 TGTCGGCCAGCACCACCACCCTGCGCTACCCCGGCTACATG TGTCGGCCAGCACCACCACCCTGTGCTACCCCGGCTACATG < 41bp 0.705005905724445 0.483078557008681 0.098945975 0.11802521 prediction 0.410011811448891 Functional Loss - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817729 chr17:40817732 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_94268 0 0 0 0 1 TUBG2 chr17:40817696 3'AG 40817696 Downstream 37bp
chr11 70265913 70265913 1 + C T CESC 70265910 + 70265890 70265930 41 AAGGACAAAGTGGATAAGAGCGCCGTTGGCTTTGAGTATCA AAGGACAAAGTGGATAAGAGCGCTGTTGGCTTTGAGTATCA < 41bp 0.705005451790382 0.479829221459471 0.16293076 0.17511672 prediction 0.410010903580763 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70265910 chr11:70265913 synonymous SNV . 0 24 hm5C_associated_SNPs_94269 0 0 1 0 2 CTTN chr11:70265852 3'AG 70265852 Downstream 62bp
chr11 70265913 70265913 1 + C T CESC 70265910 + 70265890 70265930 41 AAGGACAAAGTGGATAAGAGCGCCGTTGGCTTTGAGTATCA AAGGACAAAGTGGATAAGAGCGCTGTTGGCTTTGAGTATCA < 41bp 0.705005451790382 0.479829221459471 0.16293076 0.17511672 prediction 0.410010903580763 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70265910 chr11:70265913 synonymous SNV . 0 24 hm5C_associated_SNPs_94269 0 0 1 0 2 CTTN chr11:70265962 5'GT 70265962 Upstream 50bp
chr5 81601293 81601293 1 + T C rs375482682 81601292 + 81601272 81601312 41 GATTCCAGGCTTGGTCTCAACTCCAAATGGTAGGTGTCAAA GATTCCAGGCTTGGTCTCAACCCCAAATGGTAGGTGTCAAA < 41bp 0.705001446855529 0.448703662749499 0.9598175 0.3277286 prediction 0.410002893711058 Functional Loss - ATP6AP1L ENSG00000205464 CDS Human protein_coding chr5:81601292 chr5:81601293 nonsynonymous SNV 0.327 1 22 hm5C_associated_SNPs_94270 0 0 0 0 1 ATP6AP1L chr5:81601300 5'GT 81601300 Upstream 8bp
chrX 150911633 150911633 1 + C T LUSC 150911630 + 150911610 150911650 41 GAGACAACTACATCCACACCCTGCAGTTCAAGCTGGATGTG GAGACAACTACATCCACACCCTGTAGTTCAAGCTGGATGTG < 41bp 0.777347517579127 0.57234621267079 0.022313476 0.01554358 prediction 0.410002609816673 Functional Loss - CNGA2 ENSG00000183862 CDS Human protein_coding chrX:150911630 chrX:150911633 stopgain 0.962 1 24 hm5C_associated_SNPs_94271 0 0 0 0 1 CNGA2 chrX:150911565 3'AG 150911565 Downstream 69bp
chr1 3670711 3670711 1 + C T rs143217722 3670708 + 3670688 3670728 41 CCCAAGGATGCCGCCAGCCTCACCGGCTTCATGTCCAAAAT CCCAAGGATGCCGCCAGCCTCACTGGCTTCATGTCCAAAAT < 41bp 0.717981981227762 0.512982492903373 0.10752523 0.09147009 prediction 0.409998976648778 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3670708 chr1:3670711 synonymous SNV . 0 24 hm5C_associated_SNPs_94273 0 0 0 0 1 CCDC27 chr1:3670805 5'GT 3670805 Upstream 95bp
chr15 90280958 90280958 1 + G C SKCM 90280957 + 90280937 90280977 41 ACCATCCATGTTTCCTGCTCCGAGGTACAGAAAGGGACCAG ACCATCCATGTTTCCTGCTCCCAGGTACAGAAAGGGACCAG < 41bp 0.704997533282742 0.38014099803319 0.87196535 0.47273624 prediction 0.409995066565483 Functional Loss - WDR93 ENSG00000140527 CDS Human protein_coding chr15:90280957 chr15:90280958 nonsynonymous SNV 0.532 2 22 hm5C_associated_SNPs_94275 0 0 0 0 1 WDR93 chr15:90280960 5'GT 90280960 Upstream 3bp
chr15 37100568 37100568 1 + G C BLCA 37100564 + 37100544 37100584 41 ATCTATTGGTATGGATTTATCCAGGAGCTGGACTGCAACCG ATCTATTGGTATGGATTTATCCAGCAGCTGGACTGCAACCG < 41bp 0.704995525420673 0.424306188724586 0.90028393 0.54390204 prediction 0.409991050841346 Functional Loss - C15orf41 ENSG00000186073 CDS Human protein_coding chr15:37100564 chr15:37100568 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_94278 0 0 0 0 1 C15orf41 chr15:37100525 3'AG 37100525 Downstream 44bp
chr7 134671415 134671415 1 + G A rs193093295 134671412 + 134671392 134671432 41 CGACTGGCCTGGCCAGAGGACTCGCGTGGGAGCGAGGTGCC CGACTGGCCTGGCCAGAGGACTCACGTGGGAGCGAGGTGCC < 41bp 0.728543178673318 0.523548923672027 0.4675948 0.38905483 prediction 0.409988510002581 Functional Loss - AGBL3 ENSG00000146856 UTR5 Human protein_coding chr7:134671412 chr7:134671415 . . 0 24 hm5C_associated_SNPs_94280 0 0 1 0 1 AGBL3 chr7:134671452 5'GT 134671452 Upstream 38bp
chr21 19629084 19629084 1 + G A UCS 19629081 + 19629061 19629101 41 GAATGGAGATGGGCAAACATCTGGTGCCTGCCCAGATCTCT GAATGGAGATGGGCAAACATCTGATGCCTGCCCAGATCTCT < 41bp 0.80017181170658 0.595177581796128 0.46460682 0.19519505 prediction 0.409988459820903 Functional Loss - CHODL ENSG00000154645 CDS Human protein_coding chr21:19629081 chr21:19629084 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_94281 0 0 0 0 1 CHODL chr21:19629135 5'GT 19629135 Upstream 52bp
chr19 19216437 19216437 1 + C T CESC 19216435 + 19216415 19216455 41 CTCAGCTTGTGGCGCGGGAACTCGGCCACCATGGTGCGCGT CTCAGCTTGTGGCGCGGGAACTTGGCCACCATGGTGCGCGT < 41bp 0.868866002504989 0.663872219919639 0.8613287 0.60660505 prediction 0.4099875651707 Functional Loss - SLC25A42 ENSG00000181035 CDS Human protein_coding chr19:19216435 chr19:19216437 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_94282 0 0 1 0 1 SLC25A42 chr19:19216370 3'AG 19216370 Downstream 68bp
chr4 134084177 134084177 1 + G T LUAD 134084173 + 134084153 134084193 41 GCACTGAGGAATGTAAAGCTCTGGGCCACTCAGATCGGTGC GCACTGAGGAATGTAAAGCTCTGGTCCACTCAGATCGGTGC < 41bp 0.709015819727967 0.504023061482245 0.90585583 0.3847381 prediction 0.409985516491443 Functional Loss - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134084173 chr4:134084177 nonsynonymous SNV 0.981 2 25 hm5C_associated_SNPs_94283 0 0 0 0 1 PCDH10 chr4:134084132 3'AG 134084132 Downstream 46bp
chr4 1348598 1348598 1 + G T THCA 1348596 + 1348576 1348616 41 CGCGACACACTCAAGCTCATCCGGAACAAGTTCCTGCCGGC CGCGACACACTCAAGCTCATCCTGAACAAGTTCCTGCCGGC < 41bp 0.704992253021663 0.336151175630418 0.40152198 0.16369903 prediction 0.409984506043326 Functional Loss - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1348596 chr4:1348598 nonsynonymous SNV 0.006 0 23 hm5C_associated_SNPs_94284 0 0 1 0 2 UVSSA chr4:1348523 3'AG 1348523 Downstream 76bp
chr4 1348598 1348598 1 + G T THCA 1348596 + 1348576 1348616 41 CGCGACACACTCAAGCTCATCCGGAACAAGTTCCTGCCGGC CGCGACACACTCAAGCTCATCCTGAACAAGTTCCTGCCGGC < 41bp 0.704992253021663 0.336151175630418 0.40152198 0.16369903 prediction 0.409984506043326 Functional Loss - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1348596 chr4:1348598 nonsynonymous SNV 0.006 0 23 hm5C_associated_SNPs_94284 0 0 1 0 2 UVSSA chr4:1348635 5'GT 1348635 Upstream 38bp
chr15 40685688 40685688 1 + G T UCEC 40685685 + 40685665 40685705 41 TGCAGGCCTTAAAGGTAAAGCTGGAGATGAAAGAGGAAAGA TGCAGGCCTTAAAGGTAAAGCTGTAGATGAAAGAGGAAAGA < 41bp 0.928391172648137 0.723399379531421 0.1624282 0.15066794 prediction 0.409983586233432 Functional Loss - KNSTRN ENSG00000128944 CDS Human protein_coding chr15:40685685 chr15:40685688 stopgain 0.999 1 24 hm5C_associated_SNPs_94285 0 0 1 0 1 KNSTRN chr15:40685670 3'AG 40685670 Downstream 19bp
chr17 27380507 27380507 1 + C T READ 27380505 + 27380485 27380525 41 ATAAACCCAGGGCTACTGGTCACGGTGAAAACCACCTCCAG ATAAACCCAGGGCTACTGGTCATGGTGAAAACCACCTCCAG < 41bp 0.851366832820166 0.646376325026548 0.6759352 0.2856734 prediction 0.409981015587235 Functional Loss - PIPOX ENSG00000179761 CDS Human protein_coding chr17:27380505 chr17:27380507 nonsynonymous SNV 0.011 1 23 hm5C_associated_SNPs_94287 0 0 1 0 1 PIPOX chr17:27380431 3'AG 27380431 Downstream 77bp
chr17 43912053 43912053 1 + G A rs61732578 43912050 + 43912030 43912070 41 ACAAGCACTCGATCCGTGCCCGAGTGGCCCGTGCCATGTCC ACAAGCACTCGATCCGTGCCCGAATGGCCCGTGCCATGTCC < 41bp 0.709333835225208 0.504344067432611 0.32840365 0.21918383 prediction 0.409979535585194 Functional Loss - CRHR1;LINC02210-CRHR1 ENSG00000120088 CDS Human protein_coding chr17:43912050 chr17:43912053 nonsynonymous SNV 0.658 1 24 hm5C_associated_SNPs_94288 0 0 1 0 1 CRHR1;LINC02210-CRHR1 chr17:43911990 3'AG 43911990 Downstream 64bp
chr18 33552766 33552766 1 + C T SKCM 33552764 + 33552744 33552784 41 GCCCGGGCCAAGCCCGCTACCTCCTGTAAGAGGACTGGAGG GCCCGGGCCAAGCCCGCTACCTTCTGTAAGAGGACTGGAGG < 41bp 0.79906876941115 0.594079399329977 0.19104394 0.18212438 prediction 0.409978740162346 Functional Loss - C18orf21 ENSG00000141428 CDS Human protein_coding chr18:33552764 chr18:33552766 synonymous SNV . 0 23 hm5C_associated_SNPs_94289 0 0 1 0 2 C18orf21 chr18:33552768 5'GT 33552768 Upstream 3bp
chr18 33552766 33552766 1 + C T SKCM 33552764 + 33552744 33552784 41 GCCCGGGCCAAGCCCGCTACCTCCTGTAAGAGGACTGGAGG GCCCGGGCCAAGCCCGCTACCTTCTGTAAGAGGACTGGAGG < 41bp 0.79906876941115 0.594079399329977 0.19104394 0.18212438 prediction 0.409978740162346 Functional Loss - C18orf21 ENSG00000141428 CDS Human protein_coding chr18:33552764 chr18:33552766 synonymous SNV . 0 23 hm5C_associated_SNPs_94289 0 0 1 0 2 C18orf21 chr18:33552803 5'GT 33552803 Upstream 38bp
chr22 44386229 44386229 1 + A T UCEC 44386227 + 44386207 44386247 41 GGGATTGTCCTCAGGCTTGGCAACATCGCTCGGTTGGAACT GGGATTGTCCTCAGGCTTGGCATCATCGCTCGGTTGGAACT < 41bp 0.71501300340354 0.510027261186927 0.361651 0.176774 prediction 0.409971484433225 Functional Loss - SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44386227 chr22:44386229 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_94292 0 0 1 0 2 SAMM50 chr22:44386145 3'AG 44386145 Downstream 85bp
chr22 44386229 44386229 1 + A T UCEC 44386227 + 44386207 44386247 41 GGGATTGTCCTCAGGCTTGGCAACATCGCTCGGTTGGAACT GGGATTGTCCTCAGGCTTGGCATCATCGCTCGGTTGGAACT < 41bp 0.71501300340354 0.510027261186927 0.361651 0.176774 prediction 0.409971484433225 Functional Loss - SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44386227 chr22:44386229 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_94292 0 0 1 0 2 SAMM50 chr22:44386286 5'GT 44386286 Upstream 58bp
chr2 232003564 232003564 1 + G T UCEC 232003561 + 232003541 232003581 41 TGCTGTGCTGGTACAGGAAACAAGGTAAAGCCCACAGCCAA TGCTGTGCTGGTACAGGAAACAATGTAAAGCCCACAGCCAA < 41bp 0.704985265810942 0.36563152184275 0.90938413 0.39167547 prediction 0.409970531621884 Functional Loss - PSMD1 ENSG00000173692 CDS Human protein_coding chr2:232003561 chr2:232003564 nonsynonymous SNV 0.974 1 24 hm5C_associated_SNPs_94293 0 0 0 0 1 PSMD1 chr2:232003564 5'GT 232003564 Upstream 1bp
chr14 103999118 103999118 1 + C T UCEC 103999115 + 103999095 103999135 41 GGCGTGAGCCACGTGGCCGACGCCGTCTTCCTGGACATCCC GGCGTGAGCCACGTGGCCGACGCTGTCTTCCTGGACATCCC < 41bp 0.723569665924843 0.51859275708365 0.11228362 0.11216611 prediction 0.409953817682386 Functional Loss - TRMT61A ENSG00000166166 CDS Human protein_coding chr14:103999115 chr14:103999118 synonymous SNV . 0 24 hm5C_associated_SNPs_94300 0 0 1 0 1 TRMT61A chr14:103999185 5'GT 103999185 Upstream 68bp
chr10 99619286 99619286 1 + C T BRCA 99619283 + 99619263 99619303 41 GTCTTTATCCAGAGAGACTACAGCGATGGGACCATCTGTCA GTCTTTATCCAGAGAGACTACAGTGATGGGACCATCTGTCA < 41bp 0.734085263748542 0.529108648693632 0.17518297 0.1192601 prediction 0.409953230109821 Functional Loss - GOLGA7B ENSG00000155265 CDS Human protein_coding chr10:99619283 chr10:99619286 synonymous SNV . 0 24 hm5C_associated_SNPs_94301 0 0 0 0 2 GOLGA7B chr10:99619215 3'AG 99619215 Downstream 72bp
chr10 99619286 99619286 1 + C T BRCA 99619283 + 99619263 99619303 41 GTCTTTATCCAGAGAGACTACAGCGATGGGACCATCTGTCA GTCTTTATCCAGAGAGACTACAGTGATGGGACCATCTGTCA < 41bp 0.734085263748542 0.529108648693632 0.17518297 0.1192601 prediction 0.409953230109821 Functional Loss - GOLGA7B ENSG00000155265 CDS Human protein_coding chr10:99619283 chr10:99619286 synonymous SNV . 0 24 hm5C_associated_SNPs_94301 0 0 0 0 2 GOLGA7B chr10:99619340 5'GT 99619340 Upstream 55bp
chr5 79378926 79378926 1 + G A LUAD 79378923 + 79378903 79378943 41 ACACCATCCCTGAGGACTTCCAAGAGTTTCAAACCCAGAAT ACACCATCCCTGAGGACTTCCAAAAGTTTCAAACCCAGAAT < 41bp 0.779463695399989 0.574487991860127 0.5121438 0.29497772 prediction 0.409951407079725 Functional Loss - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79378923 chr5:79378926 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_94302 0 0 0 0 1 THBS4 chr5:79378903 3'AG 79378903 Downstream 24bp
chr11 134214975 134214975 1 + G T LUSC 134214971 + 134214951 134214991 41 AGATCGGGCTGTGGGTGATTCTGCGTCCAGGCCCCTACATC AGATCGGGCTGTGGGTGATTCTGCTTCCAGGCCCCTACATC < 41bp 0.758202267926562 0.553228030888462 0.41991723 0.27520114 prediction 0.4099484740762 Functional Loss - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134214971 chr11:134214975 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_94303 0 0 0 0 2 GLB1L2 chr11:134214928 3'AG 134214928 Downstream 48bp
chr11 134214975 134214975 1 + G T LUSC 134214971 + 134214951 134214991 41 AGATCGGGCTGTGGGTGATTCTGCGTCCAGGCCCCTACATC AGATCGGGCTGTGGGTGATTCTGCTTCCAGGCCCCTACATC < 41bp 0.758202267926562 0.553228030888462 0.41991723 0.27520114 prediction 0.4099484740762 Functional Loss - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134214971 chr11:134214975 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_94303 0 0 0 0 2 GLB1L2 chr11:134215023 5'GT 134215023 Upstream 49bp
chr14 62551021 62551021 1 + G A LUAD 62551018 + 62550998 62551038 41 CCAGAGCTGTTGGTGGGGCTCTCGTACAATGCCACAACGGG CCAGAGCTGTTGGTGGGGCTCTCATACAATGCCACAACGGG < 41bp 0.704973639728934 0.460005331878781 0.50976235 0.61957365 prediction 0.409947279457868 Functional Loss - SYT16 ENSG00000139973 CDS Human protein_coding chr14:62551018 chr14:62551021 synonymous SNV . 0 24 hm5C_associated_SNPs_94304 0 0 1 0 1 SYT16 chr14:62551103 5'GT 62551103 Upstream 83bp
chr8 51569499 51569499 1 + G T LUAD 51569496 + 51569476 51569516 41 ACATGGGCTGGTGTGAAGCCCGGGAGCAAGACCCCCTCCAG ACATGGGCTGGTGTGAAGCCCGGTAGCAAGACCCCCTCCAG < 41bp 0.89571698444995 0.690743775638652 0.9490986 0.91157806 prediction 0.409946417622596 Functional Loss - SNTG1 ENSG00000147481 CDS Human protein_coding chr8:51569496 chr8:51569499 stopgain 0.024 1 24 hm5C_associated_SNPs_94305 0 0 0 0 2 SNTG1 chr8:51569469 3'AG 51569469 Downstream 31bp
chr8 51569499 51569499 1 + G T LUAD 51569496 + 51569476 51569516 41 ACATGGGCTGGTGTGAAGCCCGGGAGCAAGACCCCCTCCAG ACATGGGCTGGTGTGAAGCCCGGTAGCAAGACCCCCTCCAG < 41bp 0.89571698444995 0.690743775638652 0.9490986 0.91157806 prediction 0.409946417622596 Functional Loss - SNTG1 ENSG00000147481 CDS Human protein_coding chr8:51569496 chr8:51569499 stopgain 0.024 1 24 hm5C_associated_SNPs_94305 0 0 0 0 2 SNTG1 chr8:51569585 5'GT 51569585 Upstream 87bp
chr3 155633924 155633924 1 + T C rs574699490 155633923 + 155633903 155633943 41 CCTTGTTGCAAGTGGCAAAGCTGAACTCATCAAAACCCATC CCTTGTTGCAAGTGGCAAAGCCGAACTCATCAAAACCCATC < 41bp 0.704971023273965 0.447697410605323 0.107207835 0.0907383 prediction 0.409942046547929 Functional Loss - GMPS ENSG00000163655 CDS Human protein_coding chr3:155633923 chr3:155633924 synonymous SNV . 0 22 hm5C_associated_SNPs_94308 0 0 1 0 1 GMPS chr3:155633981 5'GT 155633981 Upstream 58bp
chr19 50939061 50939061 1 + T C LGG 50939060 + 50939040 50939080 41 ACCCGAGGACCAGTCCCCGACTGCAGAGGAGCCCACCGGCG ACCCGAGGACCAGTCCCCGACCGCAGAGGAGCCCACCGGCG < 41bp 0.839665241420769 0.634695119880537 0.40983742 0.2041687 prediction 0.409940243080464 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50939060 chr19:50939061 synonymous SNV . 0 22 hm5C_associated_SNPs_94309 0 0 0 0 2 MYBPC2 chr19:50939033 3'AG 50939033 Downstream 29bp
chr19 50939061 50939061 1 + T C LGG 50939060 + 50939040 50939080 41 ACCCGAGGACCAGTCCCCGACTGCAGAGGAGCCCACCGGCG ACCCGAGGACCAGTCCCCGACCGCAGAGGAGCCCACCGGCG < 41bp 0.839665241420769 0.634695119880537 0.40983742 0.2041687 prediction 0.409940243080464 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50939060 chr19:50939061 synonymous SNV . 0 22 hm5C_associated_SNPs_94309 0 0 0 0 2 MYBPC2 chr19:50939119 5'GT 50939119 Upstream 59bp
chr2 178977522 178977522 1 + G A BLCA 178977519 + 178977499 178977539 41 AGCTCACAGGCCTGCAGGGCCATGGAGGAGATGCATGGCCA AGCTCACAGGCCTGCAGGGCCATAGAGGAGATGCATGGCCA < 41bp 0.806114112605531 0.601144250765497 0.687726 0.57409644 prediction 0.409939723680067 Functional Loss - RBM45 ENSG00000155636 CDS Human protein_coding chr2:178977519 chr2:178977522 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_94310 0 0 1 0 1 RBM45 chr2:178977573 5'GT 178977573 Upstream 52bp
chr12 124798816 124798816 1 + G A rs77570261 124798813 + 124798793 124798833 41 TATGCGCCCGTACCCACCGTCACGGCCTACAGCGAGACCAT TATGCGCCCGTACCCACCGTCACAGCCTACAGCGAGACCAT < 41bp 0.704967974513554 0.458149836935188 0.42395434 0.28485084 prediction 0.409935949027108 Functional Loss - RFLNA ENSG00000178882 CDS Human protein_coding chr12:124798813 chr12:124798816 synonymous SNV . 0 24 hm5C_associated_SNPs_94311 0 0 0 0 1 RFLNA chr12:124798738 3'AG 124798738 Downstream 79bp
chrX 64955264 64955264 1 + G T DLBC 64955260 + 64955240 64955280 41 CAGCAGATGAAGGCACAGGCCCGGGAGGAGAAGCACCAGAA CAGCAGATGAAGGCACAGGCCCGGTAGGAGAAGCACCAGAA < 41bp 0.705776653952381 0.500809196496044 0.8749678 0.35423735 prediction 0.409934914912674 Functional Loss - MSN ENSG00000147065 CDS Human protein_coding chrX:64955260 chrX:64955264 stopgain 1.000 1 25 hm5C_associated_SNPs_94313 0 0 1 0 1 MSN chrX:64955292 5'GT 64955292 Upstream 29bp
chr1 154296280 154296280 1 + C T CESC 154296277 + 154296257 154296297 41 GCTGGCTGGGGTCCTGAAGTCTTCAGGTGGGAGACAGACTC GCTGGCTGGGGTCCTGAAGTCTTTAGGTGGGAGACAGACTC < 41bp 0.762677435436076 0.557714163028392 0.8940714 0.61596054 prediction 0.409926544815368 Functional Loss - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154296277 chr1:154296280 synonymous SNV . 0 24 hm5C_associated_SNPs_94316 0 0 0 0 1 AQP10 chr1:154296282 5'GT 154296282 Upstream 3bp
chr16 1836639 1836639 1 + C T OV 1836636 + 1836616 1836656 41 CCACGGAGCTGGCCCTGGCACTGCGCCATGCAGGCAAGAAG CCACGGAGCTGGCCCTGGCACTGTGCCATGCAGGCAAGAAG < 41bp 0.718904325337917 0.513941174208221 0.25012404 0.20967841 prediction 0.409926302259393 Functional Loss - NUBP2 ENSG00000095906 CDS Human protein_coding chr16:1836636 chr16:1836639 nonsynonymous SNV 0.462 2 24 hm5C_associated_SNPs_94317 0 0 1 0 1 NUBP2 chr16:1836656 5'GT 1836656 Upstream 18bp
chr1 86959135 86959135 1 + C T COAD 86959132 + 86959112 86959152 41 GGCACAGTGATCGTGGACAGCACCGTGGGAAAGGACACTTT GGCACAGTGATCGTGGACAGCACTGTGGGAAAGGACACTTT < 41bp 0.704961556016794 0.478146905094567 0.20777103 0.29024184 prediction 0.409923112033589 Functional Loss - CLCA1 ENSG00000016490 CDS Human protein_coding chr1:86959132 chr1:86959135 synonymous SNV . 0 24 hm5C_associated_SNPs_94320 0 0 0 0 1 CLCA1 chr1:86959067 3'AG 86959067 Downstream 69bp
chr14 24529963 24529963 1 + G A COAD 24529960 + 24529940 24529980 41 TCAAAGATGCCAAGAACTCCCGGGCGGTGAGCCCTCCACAG TCAAAGATGCCAAGAACTCCCGGACGGTGAGCCCTCCACAG < 41bp 0.70496073994176 0.454091396995643 0.9386541 0.75986344 prediction 0.409921479883519 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24529960 chr14:24529963 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_94321 0 0 0 0 1 CARMIL3 chr14:24529965 5'GT 24529965 Upstream 3bp
chr12 56548957 56548957 1 + G A SKCM 56548954 + 56548934 56548974 41 CCCACCAACGCCGAGGTGCTCAAGGTCCTGGGGAACCCCAA CCCACCAACGCCGAGGTGCTCAAAGTCCTGGGGAACCCCAA < 41bp 0.807922699970628 0.602965255846315 0.898834 0.75699186 prediction 0.409914888248626 Functional Loss - MYL6B ENSG00000196465 CDS Human protein_coding chr12:56548954 chr12:56548957 synonymous SNV . 0 24 hm5C_associated_SNPs_94323 0 0 1 0 1 MYL6B chr12:56548982 5'GT 56548982 Upstream 26bp
chr11 45948387 45948387 1 + C T SARC 45948385 + 45948365 45948405 41 AACCGCCACCCCCCCGGCCTCACGATGTCACCCTTGTGGCC AACCGCCACCCCCCCGGCCTCATGATGTCACCCTTGTGGCC < 41bp 0.861283930645495 0.656335387563049 0.2265912 0.18720001 prediction 0.409897086164891 Functional Loss - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45948385 chr11:45948387 synonymous SNV . 0 23 hm5C_associated_SNPs_94332 0 0 1 0 1 LARGE2 chr11:45948422 5'GT 45948422 Upstream 36bp
chr11 60739383 60739383 1 + T C LUAD 60739382 + 60739362 60739402 41 GGATTGCTGACGGCAGCCCTCTCAGGTAGGCCCCCTTCCCT GGATTGCTGACGGCAGCCCTCCCAGGTAGGCCCCCTTCCCT < 41bp 0.70494567252799 0.470566167976877 0.42728078 0.70433253 prediction 0.409891345055979 Functional Loss - CD6 ENSG00000013725 CDS Human protein_coding chr11:60739382 chr11:60739383 nonsynonymous SNV 0.693 0 22 hm5C_associated_SNPs_94337 0 0 0 0 1 CD6 chr11:60739386 5'GT 60739386 Upstream 4bp
chr4 79512753 79512753 1 + G A SKCM 79512750 + 79512730 79512770 41 TCCGAAACATCTGGTGACTTCCGGAAAGCTCTGTTGACTTT TCCGAAACATCTGGTGACTTCCGAAAAGCTCTGTTGACTTT < 41bp 0.704944286259157 0.473847529924236 0.42736334 0.121592194 prediction 0.409888572518313 Functional Loss - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79512750 chr4:79512753 synonymous SNV . 0 24 hm5C_associated_SNPs_94338 0 0 0 0 2 ANXA3 chr4:79512698 3'AG 79512698 Downstream 56bp
chr4 79512753 79512753 1 + G A SKCM 79512750 + 79512730 79512770 41 TCCGAAACATCTGGTGACTTCCGGAAAGCTCTGTTGACTTT TCCGAAACATCTGGTGACTTCCGAAAAGCTCTGTTGACTTT < 41bp 0.704944286259157 0.473847529924236 0.42736334 0.121592194 prediction 0.409888572518313 Functional Loss - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79512750 chr4:79512753 synonymous SNV . 0 24 hm5C_associated_SNPs_94338 0 0 0 0 2 ANXA3 chr4:79512777 5'GT 79512777 Upstream 25bp
chr20 62848445 62848445 1 + G A STAD 62848442 + 62848422 62848462 41 CCATGTGCTTCGTGAAGCAGCTCGAGGTCCCTCCATATGGG CCATGTGCTTCGTGAAGCAGCTCAAGGTCCCTCCATATGGG < 41bp 0.832910308931323 0.627971355112935 0.23736045 0.73016447 prediction 0.409877907636776 Functional Loss - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62848442 chr20:62848445 nonsynonymous SNV 0.924 4 24 hm5C_associated_SNPs_94345 0 0 0 0 1 MYT1 chr20:62848420 3'AG 62848420 Downstream 26bp
chr12 58002362 58002362 1 + G A PRAD 58002359 + 58002339 58002379 41 ACCACACGGGTGGCCTACCTCCCGGACTGCCCTGAGGGCAA ACCACACGGGTGGCCTACCTCCCAGACTGCCCTGAGGGCAA < 41bp 0.807763908458281 0.602826672181215 0.25220537 0.17693582 prediction 0.409874472554132 Functional Loss - DTX3 ENSG00000178498 CDS Human protein_coding chr12:58002359 chr12:58002362 synonymous SNV . 0 24 hm5C_associated_SNPs_94346 0 0 1 0 1 DTX3 chr12:58002303 3'AG 58002303 Downstream 60bp
chr19 16238876 16238876 1 + C T UCEC 16238874 + 16238854 16238894 41 ATCAAGTTCATGGAGACCAGCGCGAAGGCCAACATCAATGT ATCAAGTTCATGGAGACCAGCGTGAAGGCCAACATCAATGT < 41bp 0.870035540756474 0.665101069132253 0.1836327 0.19704542 prediction 0.409868943248442 Functional Loss - RAB8A ENSG00000167461 CDS Human protein_coding chr19:16238874 chr19:16238876 nonsynonymous SNV 0.993 5 23 hm5C_associated_SNPs_94347 0 0 1 0 2 RAB8A chr19:16238836 3'AG 16238836 Downstream 41bp
chr19 16238876 16238876 1 + C T UCEC 16238874 + 16238854 16238894 41 ATCAAGTTCATGGAGACCAGCGCGAAGGCCAACATCAATGT ATCAAGTTCATGGAGACCAGCGTGAAGGCCAACATCAATGT < 41bp 0.870035540756474 0.665101069132253 0.1836327 0.19704542 prediction 0.409868943248442 Functional Loss - RAB8A ENSG00000167461 CDS Human protein_coding chr19:16238874 chr19:16238876 nonsynonymous SNV 0.993 5 23 hm5C_associated_SNPs_94347 0 0 1 0 2 RAB8A chr19:16238901 5'GT 16238901 Upstream 26bp
chr19 36633617 36633617 1 + A T LUSC 36633613 + 36633593 36633633 41 AGTGAGGAGGTCCGGCAGTTCCGGAGACTCTTTGCCCAGCT AGTGAGGAGGTCCGGCAGTTCCGGTGACTCTTTGCCCAGCT < 41bp 0.901457486075266 0.696529046389143 0.9352629 0.8342687 prediction 0.409856879372244 Functional Loss - CAPNS1 ENSG00000126247 CDS Human protein_coding chr19:36633613 chr19:36633617 stopgain 0.998 1 25 hm5C_associated_SNPs_94352 0 0 1 0 2 CAPNS1 chr19:36633554 3'AG 36633554 Downstream 64bp
chr19 36633617 36633617 1 + A T LUSC 36633613 + 36633593 36633633 41 AGTGAGGAGGTCCGGCAGTTCCGGAGACTCTTTGCCCAGCT AGTGAGGAGGTCCGGCAGTTCCGGTGACTCTTTGCCCAGCT < 41bp 0.901457486075266 0.696529046389143 0.9352629 0.8342687 prediction 0.409856879372244 Functional Loss - CAPNS1 ENSG00000126247 CDS Human protein_coding chr19:36633613 chr19:36633617 stopgain 0.998 1 25 hm5C_associated_SNPs_94352 0 0 1 0 2 CAPNS1 chr19:36633643 5'GT 36633643 Upstream 27bp
chr10 75533491 75533491 1 + C T SKCM 75533488 + 75533468 75533508 41 GGGACAGCCCCGTCTTTGAGCCCCACATTGCCCAGCCCTCA GGGACAGCCCCGTCTTTGAGCCCTACATTGCCCAGCCCTCA < 41bp 0.73941048151987 0.53448387126499 0.24093515 0.61157644 prediction 0.409853220509759 Functional Loss - FUT11 ENSG00000196968 CDS Human protein_coding chr10:75533488 chr10:75533491 nonsynonymous SNV 0.161 0 24 hm5C_associated_SNPs_94353 0 0 1 0 1 FUT11 chr10:75533573 5'GT 75533573 Upstream 83bp
chr2 36982145 36982145 1 + C T COAD 36982142 + 36982122 36982162 41 GGTTACAAAGGGAGTTATTCCAACGGTGTCCAATCGTTATC GGTTACAAAGGGAGTTATTCCAATGGTGTCCAATCGTTATC < 41bp 0.760441157549713 0.555514603925723 0.59199774 0.2297416 prediction 0.409853107247981 Functional Loss - VIT ENSG00000205221 CDS Human protein_coding chr2:36982142 chr2:36982145 synonymous SNV . 0 24 hm5C_associated_SNPs_94354 0 0 0 0 2 VIT chr2:36982064 3'AG 36982064 Downstream 82bp
chr2 36982145 36982145 1 + C T COAD 36982142 + 36982122 36982162 41 GGTTACAAAGGGAGTTATTCCAACGGTGTCCAATCGTTATC GGTTACAAAGGGAGTTATTCCAATGGTGTCCAATCGTTATC < 41bp 0.760441157549713 0.555514603925723 0.59199774 0.2297416 prediction 0.409853107247981 Functional Loss - VIT ENSG00000205221 CDS Human protein_coding chr2:36982142 chr2:36982145 synonymous SNV . 0 24 hm5C_associated_SNPs_94354 0 0 0 0 2 VIT chr2:36982197 5'GT 36982197 Upstream 53bp
chr19 55331385 55331385 1 + G T UCEC 55331381 + 55331361 55331401 41 TCCCATGATGCTTGCCCTTGCAGGGACCTACAGATGCTACG TCCCATGATGCTTGCCCTTGCAGGTACCTACAGATGCTACG < 41bp 0.704924359999618 0.49471724922796 0.7544648 0.2849286 prediction 0.409848719999236 Functional Loss - KIR3DL1 ENSG00000167633 CDS Human protein_coding chr19:55331381 chr19:55331385 synonymous SNV . 0 25 hm5C_associated_SNPs_94356 0 0 0 0 1 KIR3DL1 chr19:55331467 5'GT 55331467 Upstream 83bp
chr15 76633484 76633484 1 + G A SKCM 76633481 + 76633461 76633501 41 TGCTTGCCCCGCAGAGCCTTCAGGGACTGACTGGGACGCCC TGCTTGCCCCGCAGAGCCTTCAGAGACTGACTGGGACGCCC < 41bp 0.817887435115858 0.612965048176213 0.8984495 0.82618046 prediction 0.409844773879289 Functional Loss - ISL2 ENSG00000159556 CDS Human protein_coding chr15:76633481 chr15:76633484 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_94357 0 0 1 0 1 ISL2 chr15:76633475 3'AG 76633475 Downstream 10bp
chr4 152499143 152499143 1 + G A rs185952321 152499140 + 152499120 152499160 41 GGGGTCAGTAGGCCAGCAAGCTCGGGATGCATTGCTCTTCA GGGGTCAGTAGGCCAGCAAGCTCAGGATGCATTGCTCTTCA < 41bp 0.80782966553407 0.602908212057775 0.54939216 0.29427463 prediction 0.40984290695259 Functional Loss - FAM160A1 ENSG00000164142 CDS Human protein_coding chr4:152499140 chr4:152499143 nonsynonymous SNV 0.600 4 24 hm5C_associated_SNPs_94361 0 0 0 0 1 FAM160A1 chr4:152499228 5'GT 152499228 Upstream 86bp
chr19 41703746 41703746 1 + C T COAD 41703743 + 41703723 41703763 41 GGAAGTTTACCATGCTTGCTCTGCGGGACCTGGGCATGGGG GGAAGTTTACCATGCTTGCTCTGTGGGACCTGGGCATGGGG < 41bp 0.755937140504937 0.551022993107176 0.22365361 0.16830164 prediction 0.409828294795523 Functional Loss - CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41703743 chr19:41703746 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_94366 0 0 0 0 2 CYP2S1 chr19:41703684 3'AG 41703684 Downstream 63bp
chr19 41703746 41703746 1 + C T COAD 41703743 + 41703723 41703763 41 GGAAGTTTACCATGCTTGCTCTGCGGGACCTGGGCATGGGG GGAAGTTTACCATGCTTGCTCTGTGGGACCTGGGCATGGGG < 41bp 0.755937140504937 0.551022993107176 0.22365361 0.16830164 prediction 0.409828294795523 Functional Loss - CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41703743 chr19:41703746 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_94366 0 0 0 0 2 CYP2S1 chr19:41703833 5'GT 41703833 Upstream 88bp
chr19 2806923 2806923 1 + C T rs116482195 2806920 + 2806900 2806940 41 TGGTGTCGGTTGCAGGAGAACTGCGCTATCCTCAAGGAGCT TGGTGTCGGTTGCAGGAGAACTGTGCTATCCTCAAGGAGCT < 41bp 0.737431801094502 0.532518259871798 0.76163524 0.51278275 prediction 0.409827082445408 Functional Loss - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2806920 chr19:2806923 synonymous SNV . 0 24 hm5C_associated_SNPs_94368 0 0 1 0 1 THOP1 chr19:2806915 3'AG 2806915 Downstream 9bp
chr3 148880568 148880568 1 - T G LUAD 148880572 - 148880552 148880592 41 GTGAGTTTGAAAAAGAGTTCCTGAAGTACCACATCTGGGAG GTGAGTTTGAAAAAGAGTTCCTGACGTACCACATCTGGGAG < 41bp 0.704912523708258 0.317230675477439 0.062399805 0.09485802 prediction 0.409825047416515 Functional Loss - HPS3 ENSG00000163755 CDS Human protein_coding chr3:148880572 chr3:148880568 nonsynonymous SNV 0.778 4 25 hm5C_associated_SNPs_94370 0 0 0 0 1 HPS3 chr3:148880662 3'AG 148880662 Downstream 95bp
chr3 148880571 148880571 1 - A G UCEC 148880572 - 148880552 148880592 41 GTGAGTTTGAAAAAGAGTTCCTGAAGTACCACATCTGGGAG GTGAGTTTGAAAAAGAGTTCCCGAAGTACCACATCTGGGAG < 41bp 0.704912523708258 0.479723143249272 0.062399805 0.038941592 prediction 0.409825047416515 Functional Loss - HPS3 ENSG00000163755 CDS Human protein_coding chr3:148880572 chr3:148880571 nonsynonymous SNV 0.955 2 22 hm5C_associated_SNPs_94371 0 0 0 0 1 HPS3 chr3:148880662 3'AG 148880662 Downstream 92bp
chr17 20805547 20805547 1 + A C LUSC 20805543 + 20805523 20805563 41 CCACCCAGGAAGTCTAATGCCTACATTTAAAGGATAGCCCG CCACCCAGGAAGTCTAATGCCTACCTTTAAAGGATAGCCCG < 41bp 0.704909663703717 0.304472599536613 0.42144135 0.020815551 prediction 0.409819327407433 Functional Loss - CCDC144NL-AS1 ENSG00000233098;ENSG00000265790 ncRNA_exonic Human other chr17:20805543 chr17:20805547 . . 0 25 hm5C_associated_SNPs_94373 0 0 0 0 1 CCDC144NL-AS1 chr17:20805531 3'AG 20805531 Downstream 17bp
chr13 114193729 114193729 1 + G A COAD 114193726 + 114193706 114193746 41 GCTGTTTCCTGGCTGGAGCGCTCGTCTCCTCTCAGGGCCCC GCTGTTTCCTGGCTGGAGCGCTCATCTCCTCTCAGGGCCCC < 41bp 0.818551712237908 0.613643007397849 0.020571858 0.018471211 prediction 0.409817409680119 Functional Loss - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114193726 chr13:114193729 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_94374 0 0 1 0 2 TMCO3 chr13:114193672 3'AG 114193672 Downstream 58bp
chr13 114193729 114193729 1 + G A COAD 114193726 + 114193706 114193746 41 GCTGTTTCCTGGCTGGAGCGCTCGTCTCCTCTCAGGGCCCC GCTGTTTCCTGGCTGGAGCGCTCATCTCCTCTCAGGGCCCC < 41bp 0.818551712237908 0.613643007397849 0.020571858 0.018471211 prediction 0.409817409680119 Functional Loss - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114193726 chr13:114193729 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_94374 0 0 1 0 2 TMCO3 chr13:114193822 5'GT 114193822 Upstream 94bp
chr11 68682369 68682369 1 + C T rs139497493 68682366 + 68682346 68682386 41 CTCTGTGTAAGCAGCGGATTCTGCGCCTGGGACACCCTGCC CTCTGTGTAAGCAGCGGATTCTGTGCCTGGGACACCCTGCC < 41bp 0.704906619949903 0.478410844894556 0.8102094 0.8473109 prediction 0.409813239899805 Functional Loss - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68682366 chr11:68682369 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_94375 0 0 1 0 1 IGHMBP2 chr11:68682291 3'AG 68682291 Downstream 79bp
chr5 33461117 33461117 1 + G A PRAD 33461114 + 33461094 33461134 41 TGGAGCACTCACAGGACTCACCCGGGTACGAAGATTCCAAC TGGAGCACTCACAGGACTCACCCAGGTACGAAGATTCCAAC < 41bp 0.704906006856828 0.463837983029409 0.28729522 0.17211786 prediction 0.409812013713656 Functional Loss - TARS ENSG00000113407 CDS Human protein_coding chr5:33461114 chr5:33461117 nonsynonymous SNV 0.989 5 24 hm5C_associated_SNPs_94376 0 0 1 0 1 TARS chr5:33461169 5'GT 33461169 Upstream 53bp
chr5 33461116 33461116 1 + C T UCEC 33461114 + 33461094 33461134 41 TGGAGCACTCACAGGACTCACCCGGGTACGAAGATTCCAAC TGGAGCACTCACAGGACTCACCTGGGTACGAAGATTCCAAC < 41bp 0.704906006856828 0.420800947827769 0.28729522 0.3675236 prediction 0.409812013713656 Functional Loss - TARS ENSG00000113407 CDS Human protein_coding chr5:33461114 chr5:33461116 nonsynonymous SNV 0.986 5 23 hm5C_associated_SNPs_94377 0 0 1 0 1 TARS chr5:33461169 5'GT 33461169 Upstream 54bp
chr15 40475946 40475946 1 + C T SKCM 40475944 + 40475924 40475964 41 AGCTCGAGTGTCTCGGCAAACTCTGTTGGCACTTGAGAAAG AGCTCGAGTGTCTCGGCAAACTTTGTTGGCACTTGAGAAAG < 41bp 0.704905306816653 0.411662254603176 0.039930016 0.058854133 prediction 0.409810613633307 Functional Loss - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40475944 chr15:40475946 synonymous SNV . 0 23 hm5C_associated_SNPs_94378 0 0 1 0 1 BUB1B chr15:40475915 3'AG 40475915 Downstream 32bp
chr1 43804977 43804977 1 + G T UCEC 43804973 + 43804953 43804993 41 CCCCCCAGTATCATCAAGGCCATGGGTGGGAGCCAGCCAGG CCCCCCAGTATCATCAAGGCCATGTGTGGGAGCCAGCCAGG < 41bp 0.741138344889121 0.536233232331525 0.31511936 0.26653826 prediction 0.409810225115192 Functional Loss - MPL ENSG00000117400 CDS Human protein_coding chr1:43804973 chr1:43804977 nonsynonymous SNV 0.032 1 25 hm5C_associated_SNPs_94380 0 0 0 0 1 MPL chr1:43804942 3'AG 43804942 Downstream 36bp
chr21 38098612 38098612 1 + G A SKCM 38098609 + 38098589 38098629 41 TTGACCTGAAGCTGATATTCCTGGATTCCAGGTGAGTTCGG TTGACCTGAAGCTGATATTCCTGAATTCCAGGTGAGTTCGG < 41bp 0.830142449931186 0.625238826641321 0.27091774 0.15455246 prediction 0.40980724657973 Functional Loss - SIM2 ENSG00000159263 CDS Human protein_coding chr21:38098609 chr21:38098612 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_94381 0 0 0 0 1 SIM2 chr21:38098619 5'GT 38098619 Upstream 8bp
chr8 36788640 36788640 1 + G A SKCM 36788637 + 36788617 36788657 41 AGCTGGGGCTTCTGTCCTTACACGAAACCATTTTATCAGAC AGCTGGGGCTTCTGTCCTTACACAAAACCATTTTATCAGAC < 41bp 0.81587913292006 0.610979431878488 0.33727297 0.17900142 prediction 0.409799402083144 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36788637 chr8:36788640 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_94383 0 0 0 0 1 KCNU1 chr8:36788663 5'GT 36788663 Upstream 24bp
chr22 47189646 47189646 1 + A C LUAD 47189642 + 47189622 47189662 41 AGGAGGGGCCAGGGCTTCAGCAGAAGCCCAGGCCCGAGGCA AGGAGGGGCCAGGGCTTCAGCAGACGCCCAGGCCCGAGGCA < 41bp 0.92478766445117 0.719889065264604 0.8706234 0.70857346 prediction 0.409797198373134 Functional Loss - TBC1D22A ENSG00000054611 CDS Human protein_coding chr22:47189642 chr22:47189646 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_94384 0 0 0 0 1 TBC1D22A chr22:47189738 5'GT 47189738 Upstream 93bp
chr2 71827889 71827889 1 + C T rs146970014 71827887 + 71827867 71827907 41 ACCGAGTCTGGAACGGATGCCACGGCTGGCCTGGTTCCCAC ACCGAGTCTGGAACGGATGCCATGGCTGGCCTGGTTCCCAC < 41bp 0.773112314186132 0.568219094762357 0.21127993 0.24711558 prediction 0.40978643884755 Functional Loss - DYSF ENSG00000135636 CDS Human protein_coding chr2:71827887 chr2:71827889 nonsynonymous SNV 0.850 4 23 hm5C_associated_SNPs_94386 1 0 0 0 1 DYSF chr2:71827972 5'GT 71827972 Upstream 84bp
chr3 14706569 14706569 1 + C T rs78185490 14706566 + 14706546 14706586 41 TGGACTCTTTGGGGCGTTCCCGGCGCTGTATGAGAAAGGAT TGGACTCTTTGGGGCGTTCCCGGTGCTGTATGAGAAAGGAT < 41bp 0.773739939455133 0.568847043764522 0.9299518 0.89463913 prediction 0.409785791381222 Functional Loss - CCDC174 ENSG00000154781 CDS Human protein_coding chr3:14706566 chr3:14706569 nonsynonymous SNV 0.961 4 24 hm5C_associated_SNPs_94387 0 0 1 0 1 CCDC174 chr3:14706630 5'GT 14706630 Upstream 62bp
chr14 24843548 24843548 1 + G T SARC 24843546 + 24843526 24843566 41 CTGCAGCCCAGCGCTCAGCCCAGGAGCTGCCCCAGGTGGAG CTGCAGCCCAGCGCTCAGCCCATGAGCTGCCCCAGGTGGAG < 41bp 0.892582754504905 0.687693315501853 0.7074532 0.23829386 prediction 0.409778878006104 Functional Loss - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24843546 chr14:24843548 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_94390 0 0 0 0 1 NFATC4 chr14:24843532 3'AG 24843532 Downstream 17bp
chrX 21990068 21990068 1 + G T LUSC 21990064 + 21990044 21990084 41 GATTGGTGTTGCTGGACCTTCAGAGTTATGATGGTGATGCG GATTGGTGTTGCTGGACCTTCAGATTTATGATGGTGATGCG < 41bp 0.729500656214592 0.524620988069664 0.82640874 0.5296894 prediction 0.409759336289858 Functional Loss - SMS ENSG00000102172 CDS Human protein_coding chrX:21990064 chrX:21990068 nonsynonymous SNV 0.985 2 25 hm5C_associated_SNPs_94396 0 0 0 0 1 SMS chrX:21990015 3'AG 21990015 Downstream 54bp
chr14 60530107 60530107 1 + C T rs61994053 60530104 + 60530084 60530124 41 CCTAAAGAGAAATGAGCATACACCAAGAAACTCACCTGTTT CCTAAAGAGAAATGAGCATACACTAAGAAACTCACCTGTTT < 41bp 0.709538286441872 0.504661152735242 0.05416727 0.029636055 prediction 0.409754267413262 Functional Loss - LRRC9 ENSG00000131951 CDS Human protein_coding chr14:60530104 chr14:60530107 nonsynonymous SNV 0.859 1 24 hm5C_associated_SNPs_94398 0 0 0 3 1 LRRC9 chr14:60530041 3'AG 60530041 Downstream 67bp
chr17 30807637 30807637 1 + G T UCEC 30807634 + 30807614 30807654 41 GATTCCCTCTACAACAAAGCCAAGAAACTGACATAGGTGAG GATTCCCTCTACAACAAAGCCAATAAACTGACATAGGTGAG < 41bp 0.704873598279613 0.335980153859335 0.07019055 0.16049632 prediction 0.409747196559227 Functional Loss - PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30807634 chr17:30807637 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_94400 0 0 1 0 1 PSMD11 chr17:30807649 5'GT 30807649 Upstream 13bp
chr1 53580585 53580585 1 - G A rs17108032 53580588 - 53580568 53580608 41 TCTAGCCGCCTGGGCGTCCTCACCGTGGCGTACTACCTGTG TCTAGCCGCCTGGGCGTCCTCACTGTGGCGTACTACCTGTG < 41bp 0.741598550109269 0.536725796427059 0.7181353 0.49011475 prediction 0.409745507364421 Functional Loss - SLC1A7 ENSG00000162383 CDS Human protein_coding chr1:53580588 chr1:53580585 synonymous SNV . 0 24 hm5C_associated_SNPs_94401 0 0 0 0 1 SLC1A7 chr1:53580645 3'AG 53580645 Downstream 61bp
chr12 31244772 31244772 1 + G A COAD 31244769 + 31244749 31244789 41 CACAACCTGATCGACACCATCACGGGCATGCACAGCGTGGA CACAACCTGATCGACACCATCACAGGCATGCACAGCGTGGA < 41bp 0.807041942929576 0.602170231115034 0.69397205 0.23892614 prediction 0.409743423629083 Functional Loss - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244769 chr12:31244772 synonymous SNV . 0 24 hm5C_associated_SNPs_94403 0 0 0 0 1 DDX11 chr12:31244805 5'GT 31244805 Upstream 34bp
chr10 105156450 105156450 1 + G A rs149421028 105156447 + 105156427 105156467 41 CGCGTGTGTGAGTACCGCGGCGCGAGGTTAGTGGTAGCTGG CGCGTGTGTGAGTACCGCGGCGCAAGGTTAGTGGTAGCTGG < 41bp 0.704871587140727 0.478628412801857 0.43928206 0.38424918 prediction 0.409743174281455 Functional Loss - PDCD11 ENSG00000148843 UTR5 Human protein_coding chr10:105156447 chr10:105156450 . . 0 24 hm5C_associated_SNPs_94404 0 0 1 0 1 PDCD11 chr10:105156487 5'GT 105156487 Upstream 38bp
chr17 79419842 79419842 1 + G A COAD 79419839 + 79419819 79419859 41 TCGCTGCCTGCCCCACGTCCCACGGGGCCGCTCCCCAGGAG TCGCTGCCTGCCCCACGTCCCACAGGGCCGCTCCCCAGGAG < 41bp 0.704869015457316 0.450626920390297 0.86072195 0.24891901 prediction 0.409738030914631 Functional Loss - BAHCC1 ENSG00000171282 CDS Human other chr17:79419839 chr17:79419842 synonymous SNV . 0 24 hm5C_associated_SNPs_94405 0 0 1 0 2 BAHCC1 chr17:79419749 3'AG 79419749 Downstream 94bp
chr17 79419842 79419842 1 + G A COAD 79419839 + 79419819 79419859 41 TCGCTGCCTGCCCCACGTCCCACGGGGCCGCTCCCCAGGAG TCGCTGCCTGCCCCACGTCCCACAGGGCCGCTCCCCAGGAG < 41bp 0.704869015457316 0.450626920390297 0.86072195 0.24891901 prediction 0.409738030914631 Functional Loss - BAHCC1 ENSG00000171282 CDS Human other chr17:79419839 chr17:79419842 synonymous SNV . 0 24 hm5C_associated_SNPs_94405 0 0 1 0 2 BAHCC1 chr17:79419877 5'GT 79419877 Upstream 36bp
chr18 43219786 43219786 1 + G A STAD 43219783 + 43219763 43219803 41 CCTGGACAGGCGGCGTGTTCCTGGTGGCTCTGTTCATCTCC CCTGGACAGGCGGCGTGTTCCTGATGGCTCTGTTCATCTCC < 41bp 0.810733540143163 0.605865465733247 0.16914216 0.040697485 prediction 0.409736148819833 Functional Loss - SLC14A2 ENSG00000132874 CDS Human protein_coding chr18:43219783 chr18:43219786 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_94408 0 0 0 0 2 SLC14A2 chr18:43219711 3'AG 43219711 Downstream 76bp
chr18 43219786 43219786 1 + G A STAD 43219783 + 43219763 43219803 41 CCTGGACAGGCGGCGTGTTCCTGGTGGCTCTGTTCATCTCC CCTGGACAGGCGGCGTGTTCCTGATGGCTCTGTTCATCTCC < 41bp 0.810733540143163 0.605865465733247 0.16914216 0.040697485 prediction 0.409736148819833 Functional Loss - SLC14A2 ENSG00000132874 CDS Human protein_coding chr18:43219783 chr18:43219786 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_94408 0 0 0 0 2 SLC14A2 chr18:43219858 5'GT 43219858 Upstream 73bp
chr10 106976817 106976817 1 + G A SKCM 106976814 + 106976794 106976834 41 ATAAGAGTGCGGGGATCTTCCAGGTGACAGCCTATGCAGAG ATAAGAGTGCGGGGATCTTCCAGATGACAGCCTATGCAGAG < 41bp 0.777277539941281 0.57241063915879 0.86225224 0.57280743 prediction 0.409733801564983 Functional Loss - SORCS3 ENSG00000156395 CDS Human protein_coding chr10:106976814 chr10:106976817 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_94409 0 0 0 1 1 SORCS3 chr10:106976880 5'GT 106976880 Upstream 64bp
chr6 31675536 31675536 1 + G A SKCM 31675533 + 31675513 31675553 41 CAGCACCACAACTACCAGAACTGGAGGGTGTACGACGTCTT CAGCACCACAACTACCAGAACTGAAGGGTGTACGACGTCTT < 41bp 0.782760720236107 0.577894950773511 0.22205248 0.10696444 prediction 0.409731538925191 Functional Loss - LY6G6F ENSG00000204424;ENSG00000250641 CDS Human other chr6:31675533 chr6:31675536 stopgain 0.953 1 24 hm5C_associated_SNPs_94410 0 0 0 0 1 LY6G6F chr6:31675564 5'GT 31675564 Upstream 29bp
chr2 187370558 187370558 1 + G T PAAD 187370555 + 187370535 187370575 41 TACCCGCTACACCCAGGGAACAGGTGGTGATGAGGTAAGAG TACCCGCTACACCCAGGGAACAGTTGGTGATGAGGTAAGAG < 41bp 0.704863564603726 0.308951443440295 0.7127309 0.34665 prediction 0.409727129207453 Functional Loss - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187370555 chr2:187370558 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_94412 0 0 1 0 2 ZC3H15 chr2:187370467 3'AG 187370467 Downstream 92bp
chr2 187370558 187370558 1 + G T PAAD 187370555 + 187370535 187370575 41 TACCCGCTACACCCAGGGAACAGGTGGTGATGAGGTAAGAG TACCCGCTACACCCAGGGAACAGTTGGTGATGAGGTAAGAG < 41bp 0.704863564603726 0.308951443440295 0.7127309 0.34665 prediction 0.409727129207453 Functional Loss - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187370555 chr2:187370558 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_94412 0 0 1 0 2 ZC3H15 chr2:187370568 5'GT 187370568 Upstream 11bp
chr8 67040639 67040639 1 + A C OV 67040638 + 67040618 67040658 41 ATGAAGTGGTTTTGGATAGACATGGGGTATATGGACTTCAG ATGAAGTGGTTTTGGATAGACCTGGGGTATATGGACTTCAG < 41bp 0.70485744323556 0.43950229206415 0.42236358 0.47515693 prediction 0.409714886471121 Functional Loss - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67040638 chr8:67040639 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_94417 0 0 0 0 1 TRIM55 chr8:67040711 5'GT 67040711 Upstream 73bp
chr2 29226426 29226426 1 + G A SKCM 29226423 + 29226403 29226443 41 CAGAAGTCCCTGGGCGCCATCGTGATCCCACCCATCCCAAA CAGAAGTCCCTGGGCGCCATCGTAATCCCACCCATCCCAAA < 41bp 0.70485523563246 0.444708072748314 0.83699226 0.7883574 prediction 0.40971047126492 Functional Loss - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29226423 chr2:29226426 synonymous SNV . 0 24 hm5C_associated_SNPs_94418 0 0 0 0 1 TOGARAM2 chr2:29226358 3'AG 29226358 Downstream 69bp
chr8 16962938 16962938 1 + C T SKCM 16962935 + 16962915 16962955 41 GTCATAGATTCATGGATAATCTCCAAACAGAAGTTCTAGAA GTCATAGATTCATGGATAATCTCTAAACAGAAGTTCTAGAA < 41bp 0.767401515181375 0.562548917505671 0.95607734 0.80642045 prediction 0.409705195351408 Functional Loss - MICU3 ENSG00000155970 CDS Human protein_coding chr8:16962935 chr8:16962938 stopgain 0.978 1 24 hm5C_associated_SNPs_94420 0 0 0 0 1 MICU3 chr8:16962922 3'AG 16962922 Downstream 17bp
chr12 110019269 110019269 1 + C T STAD 110019266 + 110019246 110019286 41 GGGGCGGGCTTGGGCTCCAGCGCCGCCTACTCGGTGTGTCT GGGGCGGGCTTGGGCTCCAGCGCTGCCTACTCGGTGTGTCT < 41bp 0.738420375068809 0.533568646793998 0.60331964 0.47959477 prediction 0.409703456549622 Functional Loss - MVK ENSG00000110921 CDS Human protein_coding chr12:110019266 chr12:110019269 synonymous SNV . 0 24 hm5C_associated_SNPs_94421 1 0 1 0 2 MVK chr12:110019200 3'AG 110019200 Downstream 70bp
chr12 110019269 110019269 1 + C T STAD 110019266 + 110019246 110019286 41 GGGGCGGGCTTGGGCTCCAGCGCCGCCTACTCGGTGTGTCT GGGGCGGGCTTGGGCTCCAGCGCTGCCTACTCGGTGTGTCT < 41bp 0.738420375068809 0.533568646793998 0.60331964 0.47959477 prediction 0.409703456549622 Functional Loss - MVK ENSG00000110921 CDS Human protein_coding chr12:110019266 chr12:110019269 synonymous SNV . 0 24 hm5C_associated_SNPs_94421 1 0 1 0 2 MVK chr12:110019355 5'GT 110019355 Upstream 87bp
chrX 100497922 100497922 1 + C T SKCM 100497920 + 100497900 100497940 41 TTAGTGAGAGGCTTAAGCAGCTCCAGGATGCCCACCGGGAC TTAGTGAGAGGCTTAAGCAGCTTCAGGATGCCCACCGGGAC < 41bp 0.704850702988907 0.396803328275663 0.8231201 0.20667392 prediction 0.409701405977814 Functional Loss - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100497920 chrX:100497922 synonymous SNV . 0 23 hm5C_associated_SNPs_94422 0 0 0 0 2 DRP2 chrX:100497893 3'AG 100497893 Downstream 30bp
chrX 100497922 100497922 1 + C T SKCM 100497920 + 100497900 100497940 41 TTAGTGAGAGGCTTAAGCAGCTCCAGGATGCCCACCGGGAC TTAGTGAGAGGCTTAAGCAGCTTCAGGATGCCCACCGGGAC < 41bp 0.704850702988907 0.396803328275663 0.8231201 0.20667392 prediction 0.409701405977814 Functional Loss - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100497920 chrX:100497922 synonymous SNV . 0 23 hm5C_associated_SNPs_94422 0 0 0 0 2 DRP2 chrX:100497971 5'GT 100497971 Upstream 50bp
chr11 1000484 1000484 1 + C T COAD 1000481 + 1000461 1000501 41 GGGTCTCGGGGCTGCCCCCCCTGCCCCCGCGGGCCCCCCAC GGGTCTCGGGGCTGCCCCCCCTGTCCCCGCGGGCCCCCCAC < 41bp 0.706646336952716 0.501795677450339 0.3878054 0.34010231 prediction 0.409701319004755 Functional Loss - AP2A2 ENSG00000183020 CDS Human protein_coding chr11:1000481 chr11:1000484 nonsynonymous SNV 0.020 0 24 hm5C_associated_SNPs_94423 0 0 0 0 1 AP2A2 chr11:1000432 3'AG 1000432 Downstream 53bp
chr22 24659526 24659526 1 + G T UCEC 24659522 + 24659502 24659542 41 TGCCTGGGCCATGGAGCACTCTGAGATCTCATCGCGGACAC TGCCTGGGCCATGGAGCACTCTGATATCTCATCGCGGACAC < 41bp 0.731884673478661 0.527037780784943 0.301992 0.088350356 prediction 0.409693785387436 Functional Loss - POM121L9P ENSG00000128262 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:24659522 chr22:24659526 . . 0 25 hm5C_associated_SNPs_94424 0 0 0 0 1 POM121L9P chr22:24659468 3'AG 24659468 Downstream 59bp
chr2 97017702 97017702 1 + C T BLCA 97017700 + 97017680 97017720 41 TCTGATGTCCAGACTCTCTCCACGGGAGAACCTCTCGAGTT TCTGATGTCCAGACTCTCTCCATGGGAGAACCTCTCGAGTT < 41bp 0.860123173381345 0.655277197057224 0.914731 0.6923792 prediction 0.409691952648241 Functional Loss - NCAPH ENSG00000121152 CDS Human protein_coding chr2:97017700 chr2:97017702 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_94425 0 0 1 0 1 NCAPH chr2:97017758 5'GT 97017758 Upstream 57bp
chr11 65735168 65735168 1 + C T rs143607098 65735165 + 65735145 65735185 41 CCCAGAGGAAGGTGGAGCTCCACCGCCGGGGTCCCCGCAGG CCCAGAGGAAGGTGGAGCTCCACTGCCGGGGTCCCCGCAGG < 41bp 0.704844351293593 0.491967343618052 0.44258177 0.17537332 prediction 0.409688702587186 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65735165 chr11:65735168 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_94426 0 0 1 0 1 SART1 chr11:65735150 3'AG 65735150 Downstream 19bp
chr16 53476758 53476758 1 + G T UCEC 53476754 + 53476734 53476774 41 AGGAGCAACCTCGTCAGCAGCGAGGAAGGAAACAGCGGTAG AGGAGCAACCTCGTCAGCAGCGAGTAAGGAAACAGCGGTAG < 41bp 0.753435188066418 0.548593216659652 0.47896272 0.11991939 prediction 0.409683942813531 Functional Loss - RBL2 ENSG00000103479 CDS Human protein_coding chr16:53476754 chr16:53476758 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_94427 0 0 0 0 1 RBL2 chr16:53476770 5'GT 53476770 Upstream 13bp
chr8 134237731 134237731 1 + C T SKCM 134237729 + 134237709 134237749 41 CTGCGGCCTGGGGGTCTCCACTCGGATCTCCAATGTTAACG CTGCGGCCTGGGGGTCTCCACTTGGATCTCCAATGTTAACG < 41bp 0.86452525151607 0.659683956011393 0.34046507 0.1935063 prediction 0.409682591009354 Functional Loss - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134237729 chr8:134237731 nonsynonymous SNV 0.552 4 23 hm5C_associated_SNPs_94428 0 0 0 0 2 WISP1 chr8:134237633 3'AG 134237633 Downstream 99bp
chr8 134237731 134237731 1 + C T SKCM 134237729 + 134237709 134237749 41 CTGCGGCCTGGGGGTCTCCACTCGGATCTCCAATGTTAACG CTGCGGCCTGGGGGTCTCCACTTGGATCTCCAATGTTAACG < 41bp 0.86452525151607 0.659683956011393 0.34046507 0.1935063 prediction 0.409682591009354 Functional Loss - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134237729 chr8:134237731 nonsynonymous SNV 0.552 4 23 hm5C_associated_SNPs_94428 0 0 0 0 2 WISP1 chr8:134237826 5'GT 134237826 Upstream 96bp
chr20 34526943 34526943 1 + C T UCEC 34526940 + 34526920 34526960 41 GTCAACCCCCTCCATGAGAACGGCGATGATTCCCTTTCCCC GTCAACCCCCTCCATGAGAACGGTGATGATTCCCTTTCCCC < 41bp 0.704841254364644 0.496503747943902 0.23413607 0.12382117 prediction 0.409682508729289 Functional Loss - PHF20 ENSG00000025293 CDS Human protein_coding chr20:34526940 chr20:34526943 synonymous SNV . 0 24 hm5C_associated_SNPs_94429 0 0 1 0 1 PHF20 chr20:34527030 5'GT 34527030 Upstream 88bp
chr16 31391611 31391611 1 + C T COAD 31391608 + 31391588 31391628 41 ACTGCTCCATTGCTGGCTGCCTGCGGTTCCGCTGTGACGTC ACTGCTCCATTGCTGGCTGCCTGTGGTTCCGCTGTGACGTC < 41bp 0.74357398683732 0.538737927800671 0.04226777 0.016955674 prediction 0.409672118073297 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31391608 chr16:31391611 nonsynonymous SNV 0.880 2 24 hm5C_associated_SNPs_94434 0 0 0 0 2 ITGAX chr16:31391587 3'AG 31391587 Downstream 25bp
chr16 31391611 31391611 1 + C T COAD 31391608 + 31391588 31391628 41 ACTGCTCCATTGCTGGCTGCCTGCGGTTCCGCTGTGACGTC ACTGCTCCATTGCTGGCTGCCTGTGGTTCCGCTGTGACGTC < 41bp 0.74357398683732 0.538737927800671 0.04226777 0.016955674 prediction 0.409672118073297 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31391608 chr16:31391611 nonsynonymous SNV 0.880 2 24 hm5C_associated_SNPs_94434 0 0 0 0 2 ITGAX chr16:31391700 5'GT 31391700 Upstream 90bp
chr6 4125529 4125529 1 - G A UCEC 4125532 - 4125512 4125552 41 AATGGTCCAGCTGTGGGCATCTCCGTCACCCTCCTTGGGCT AATGGTCCAGCTGTGGGCATCTCTGTCACCCTCCTTGGGCT < 41bp 0.777686188231801 0.572861764000637 0.3815302 0.107498676 prediction 0.40964884846233 Functional Loss - ECI2 ENSG00000198721 CDS Human protein_coding chr6:4125532 chr6:4125529 synonymous SNV . 0 24 hm5C_associated_SNPs_94442 0 0 1 0 1 ECI2 chr6:4125604 3'AG 4125604 Downstream 76bp
chr8 24350720 24350720 1 + G A OV 24350717 + 24350697 24350737 41 AGACATTGGCCTGGTGGCGTCAGGAACAAAATGTGGAGAGG AGACATTGGCCTGGTGGCGTCAGAAACAAAATGTGGAGAGG < 41bp 0.776868076074976 0.572044191108405 0.85411686 0.83244073 prediction 0.409647769933144 Functional Loss - ADAM7 ENSG00000069206 CDS Human protein_coding chr8:24350717 chr8:24350720 nonsynonymous SNV 0.931 4 24 hm5C_associated_SNPs_94443 0 0 0 0 1 ADAM7 chr8:24350742 5'GT 24350742 Upstream 23bp
chr15 45439720 45439720 1 + G A SKCM 45439717 + 45439697 45439737 41 GCCCTGACCTGTGAGCTGAGCAGGGCCGAGTTTGCCGAGTC GCCCTGACCTGTGAGCTGAGCAGAGCCGAGTTTGCCGAGTC < 41bp 0.814312566175257 0.609490813116031 0.92427576 0.87098277 prediction 0.409643506118454 Functional Loss - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45439717 chr15:45439720 synonymous SNV . 0 24 hm5C_associated_SNPs_94444 0 0 0 0 1 DUOX1 chr15:45439631 3'AG 45439631 Downstream 90bp
chr16 85952329 85952329 1 + C T SKCM 85952327 + 85952307 85952347 41 CGCGTGTTCTGCAGCGGCAACGCCGTGGTGTGCAAAGGCAG CGCGTGTTCTGCAGCGGCAACGTCGTGGTGTGCAAAGGCAG < 41bp 0.704820316864025 0.431782159542836 0.15366903 0.18862513 prediction 0.40964063372805 Functional Loss - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85952327 chr16:85952329 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_94446 0 0 0 0 1 IRF8 chr16:85952409 5'GT 85952409 Upstream 81bp
chr17 3563974 3563974 1 + G T SARC 3563972 + 3563952 3563992 41 AGGACTGGGCACCAAGCTTGCAGCCGAAGGCCTTGCCCCAA AGGACTGGGCACCAAGCTTGCATCCGAAGGCCTTGCCCCAA < 41bp 0.704815941104402 0.345465478564588 0.8322425 0.3144102 prediction 0.409631882208805 Functional Loss - CTNS ENSG00000040531 CDS Human protein_coding chr17:3563972 chr17:3563974 nonsynonymous SNV 0.594 1 23 hm5C_associated_SNPs_94449 0 0 0 0 1 CTNS chr17:3563911 3'AG 3563911 Downstream 64bp
chr1 160094133 160094133 1 + G T UCEC 160094129 + 160094109 160094149 41 AGAGAAGATGCAGATCAACGCAGAGGAAGTGGTGGTGGGAG AGAGAAGATGCAGATCAACGCAGATGAAGTGGTGGTGGGAG < 41bp 0.704810610339024 0.498740979210714 0.8116746 0.747753 prediction 0.409621220678047 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160094129 chr1:160094133 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_94455 0 0 0 0 2 ATP1A2 chr1:160094086 3'AG 160094086 Downstream 48bp
chr1 160094133 160094133 1 + G T UCEC 160094129 + 160094109 160094149 41 AGAGAAGATGCAGATCAACGCAGAGGAAGTGGTGGTGGGAG AGAGAAGATGCAGATCAACGCAGATGAAGTGGTGGTGGGAG < 41bp 0.704810610339024 0.498740979210714 0.8116746 0.747753 prediction 0.409621220678047 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160094129 chr1:160094133 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_94455 0 0 0 0 2 ATP1A2 chr1:160094220 5'GT 160094220 Upstream 88bp
chr16 67578658 67578658 1 + C T SKCM 67578655 + 67578635 67578675 41 CATGGGCCCTGGAGCGGCTGCTGCGGGAAGCCCGAGTACTG CATGGGCCCTGGAGCGGCTGCTGTGGGAAGCCCGAGTACTG < 41bp 0.704809690652436 0.48621801398366 0.76249623 0.7513035 prediction 0.409619381304872 Functional Loss - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578655 chr16:67578658 nonsynonymous SNV 0.958 4 24 hm5C_associated_SNPs_94456 0 0 0 0 2 RIPOR1 chr16:67578598 3'AG 67578598 Downstream 61bp
chr16 67578658 67578658 1 + C T SKCM 67578655 + 67578635 67578675 41 CATGGGCCCTGGAGCGGCTGCTGCGGGAAGCCCGAGTACTG CATGGGCCCTGGAGCGGCTGCTGTGGGAAGCCCGAGTACTG < 41bp 0.704809690652436 0.48621801398366 0.76249623 0.7513035 prediction 0.409619381304872 Functional Loss - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578655 chr16:67578658 nonsynonymous SNV 0.958 4 24 hm5C_associated_SNPs_94456 0 0 0 0 2 RIPOR1 chr16:67578733 5'GT 67578733 Upstream 76bp
chrX 54837516 54837516 1 + A C UCEC 54837512 + 54837492 54837532 41 CTGCCAAGCTCCAGTCATCCCAAGAGCCTGAAGCACCACCA CTGCCAAGCTCCAGTCATCCCAAGCGCCTGAAGCACCACCA < 41bp 0.943910871163476 0.739103660580089 0.34715846 0.21413517 prediction 0.409614421166774 Functional Loss - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54837512 chrX:54837516 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_94459 0 0 1 0 1 MAGED2 chrX:54837479 3'AG 54837479 Downstream 38bp
chr7 98956026 98956026 1 + C T LUAD 98956023 + 98956003 98956043 41 GTGTCATTTGTCTCAGAGAACAGCGTCGTGGCTGCTGTGAG GTGTCATTTGTCTCAGAGAACAGTGTCGTGGCTGCTGTGAG < 41bp 0.725902066955768 0.521097165590885 0.22971526 0.1750372 prediction 0.409609802729766 Functional Loss - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98956023 chr7:98956026 synonymous SNV . 0 24 hm5C_associated_SNPs_94460 0 0 1 3 1 ARPC1A chr7:98956038 5'GT 98956038 Upstream 13bp
chr3 127396598 127396598 1 + C T CESC 127396596 + 127396576 127396616 41 GAGAGCGAGGAGCCAGCGACCTCAGGGGGCCCCCCAGCCGT GAGAGCGAGGAGCCAGCGACCTTAGGGGGCCCCCCAGCCGT < 41bp 0.849891615611701 0.64508716037935 0.25037664 0.3649084 prediction 0.409608910464704 Functional Loss - ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127396596 chr3:127396598 nonsynonymous SNV 0.029 0 23 hm5C_associated_SNPs_94461 0 0 0 0 2 ABTB1 chr3:127396519 3'AG 127396519 Downstream 80bp
chr3 127396598 127396598 1 + C T CESC 127396596 + 127396576 127396616 41 GAGAGCGAGGAGCCAGCGACCTCAGGGGGCCCCCCAGCCGT GAGAGCGAGGAGCCAGCGACCTTAGGGGGCCCCCCAGCCGT < 41bp 0.849891615611701 0.64508716037935 0.25037664 0.3649084 prediction 0.409608910464704 Functional Loss - ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127396596 chr3:127396598 nonsynonymous SNV 0.029 0 23 hm5C_associated_SNPs_94461 0 0 0 0 2 ABTB1 chr3:127396686 5'GT 127396686 Upstream 89bp
chr19 3746666 3746666 1 + C T UCEC 3746663 + 3746643 3746683 41 TCTACGCACAAGCCCAGAAGCTGCGAAAACACAGCAGCCAC TCTACGCACAAGCCCAGAAGCTGTGAAAACACAGCAGCCAC < 41bp 0.728183072922743 0.52338357586827 0.21721104 0.21090925 prediction 0.409598994108946 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3746663 chr19:3746666 stopgain 0.755 0 24 hm5C_associated_SNPs_94465 0 0 0 0 1 TJP3 chr19:3746693 5'GT 3746693 Upstream 28bp
chr4 6826316 6826316 1 + G A UCEC 6826313 + 6826293 6826333 41 CAGTGCAGACCTGGCTGGGACAAGAGCTCGAGAAATGTGGC CAGTGCAGACCTGGCTGGGACAAAAGCTCGAGAAATGTGGC < 41bp 0.704788046823691 0.466958907435707 0.23976862 0.1667018 prediction 0.409576093647381 Functional Loss - KIAA0232 ENSG00000170871 CDS Human protein_coding chr4:6826313 chr4:6826316 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_94474 0 0 1 0 1 KIAA0232 chr4:6826411 5'GT 6826411 Upstream 96bp
chr15 23605382 23605382 1 + T C LIHC 23605381 + 23605361 23605401 41 CTTCTCACTCTTCAGCAGTTCTCCAGCCGCAGTAAAGCACG CTTCTCACTCTTCAGCAGTTCCCCAGCCGCAGTAAAGCACG < 41bp 0.704784429175297 0.445500976994681 0.94338894 0.3294707 prediction 0.409568858350593 Functional Loss - GOLGA8S ENSG00000261739 CDS Human protein_coding chr15:23605381 chr15:23605382 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_94475 0 0 0 0 2 GOLGA8S chr15:23605376 3'AG 23605376 Downstream 7bp
chr15 23605382 23605382 1 + T C LIHC 23605381 + 23605361 23605401 41 CTTCTCACTCTTCAGCAGTTCTCCAGCCGCAGTAAAGCACG CTTCTCACTCTTCAGCAGTTCCCCAGCCGCAGTAAAGCACG < 41bp 0.704784429175297 0.445500976994681 0.94338894 0.3294707 prediction 0.409568858350593 Functional Loss - GOLGA8S ENSG00000261739 CDS Human protein_coding chr15:23605381 chr15:23605382 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_94475 0 0 0 0 2 GOLGA8S chr15:23605465 5'GT 23605465 Upstream 84bp
chr17 78196512 78196512 1 + G A UCEC 78196509 + 78196489 78196529 41 GTATTTCTTCCTGGGCACCTCCCGGGATGTGACTCTGGGCC GTATTTCTTCCTGGGCACCTCCCAGGATGTGACTCTGGGCC < 41bp 0.704780662983912 0.445145024861603 0.27270395 0.25251895 prediction 0.409561325967824 Functional Loss - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78196509 chr17:78196512 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_94476 0 0 1 0 1 SLC26A11 chr17:78196454 3'AG 78196454 Downstream 59bp
chr1 47607827 47607827 1 + C T rs147010308 47607824 + 47607804 47607844 41 GGCAGACATGGTTCCAGCATCGACGGATGCTGACCCCAGCC GGCAGACATGGTTCCAGCATCGATGGATGCTGACCCCAGCC < 41bp 0.740793023591551 0.536012663897487 0.3129624 0.26532823 prediction 0.409560719388129 Functional Loss - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47607824 chr1:47607827 nonsynonymous SNV 0.194 4 24 hm5C_associated_SNPs_94477 0 0 0 0 1 CYP4A22 chr1:47607907 5'GT 47607907 Upstream 81bp
chr1 22963187 22963187 1 + A T rs561518701 22963183 + 22963163 22963203 41 GAGCATCCAGTTGGAGTTGACAACAGGAGGCAGGTGAGGCC GAGCATCCAGTTGGAGTTGACAACTGGAGGCAGGTGAGGCC < 41bp 0.704774555238605 0.491406882600545 0.36041576 0.27942735 prediction 0.40954911047721 Functional Loss - C1QA ENSG00000173372 UTR5 Human protein_coding chr1:22963183 chr1:22963187 . . 0 25 hm5C_associated_SNPs_94479 0 0 0 0 1 C1QA chr1:22963195 5'GT 22963195 Upstream 9bp
chr19 56473562 56473562 1 + G A SKCM 56473559 + 56473539 56473579 41 CCTCCTTTTTTGAAGGCTCTCGCGGCCGCACTGAGGCACCC CCTCCTTTTTTGAAGGCTCTCGCAGCCGCACTGAGGCACCC < 41bp 0.820527061314086 0.615755357505993 0.65458345 0.31791717 prediction 0.409543407616185 Functional Loss - NLRP8 ENSG00000179709 CDS Human protein_coding chr19:56473559 chr19:56473562 synonymous SNV . 0 24 hm5C_associated_SNPs_94481 0 0 0 0 1 NLRP8 chr19:56473603 5'GT 56473603 Upstream 42bp
chr9 132638450 132638450 1 + C T UCEC 132638448 + 132638428 132638468 41 GTGAACCACCTGTACGTGTGCTCCATCTGCCAGGTGGAGAT GTGAACCACCTGTACGTGTGCTTCATCTGCCAGGTGGAGAT < 41bp 0.70476982717584 0.403691762643705 0.8415949 0.2986358 prediction 0.409539654351681 Functional Loss - USP20 ENSG00000136878 CDS Human protein_coding chr9:132638448 chr9:132638450 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_94484 0 0 0 0 2 USP20 chr9:132638409 3'AG 132638409 Downstream 42bp
chr9 132638450 132638450 1 + C T UCEC 132638448 + 132638428 132638468 41 GTGAACCACCTGTACGTGTGCTCCATCTGCCAGGTGGAGAT GTGAACCACCTGTACGTGTGCTTCATCTGCCAGGTGGAGAT < 41bp 0.70476982717584 0.403691762643705 0.8415949 0.2986358 prediction 0.409539654351681 Functional Loss - USP20 ENSG00000136878 CDS Human protein_coding chr9:132638448 chr9:132638450 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_94484 0 0 0 0 2 USP20 chr9:132638517 5'GT 132638517 Upstream 68bp
chr17 12847441 12847441 1 + C T SKCM 12847438 + 12847418 12847458 41 CCGCTGGAGGAGCACCTCACCATCAGCGGCCGGGAGATCGC CCGCTGGAGGAGCACCTCACCATTAGCGGCCGGGAGATCGC < 41bp 0.704766826979015 0.477043540861659 0.3773837 0.23390064 prediction 0.409533653958031 Functional Loss - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12847438 chr17:12847441 synonymous SNV . 0 24 hm5C_associated_SNPs_94485 0 0 1 0 1 ARHGAP44 chr17:12847513 5'GT 12847513 Upstream 73bp
chr1 13743058 13743058 1 + G A STAD 13743055 + 13743035 13743075 41 CAGAGACCTTCCAAGCTGTGCTCGATGGGCTTGATGCACTG CAGAGACCTTCCAAGCTGTGCTCAATGGGCTTGATGCACTG < 41bp 0.822978498866174 0.618213897076462 0.2754362 0.094509244 prediction 0.409529203579424 Functional Loss - PRAMEF20 ENSG00000204478 CDS Human protein_coding chr1:13743055 chr1:13743058 nonsynonymous SNV 0.042 1 24 hm5C_associated_SNPs_94488 0 0 0 0 1 PRAMEF20 chr1:13743098 5'GT 13743098 Upstream 41bp
chr19 44500313 44500313 1 + C T UCEC 44500310 + 44500290 44500330 41 CACATGAAGAGTGGTCCTGCCAGCAAATCTGGGAACAAATT CACATGAAGAGTGGTCCTGCCAGTAAATCTGGGAACAAATT < 41bp 0.75188919828802 0.547128508234802 0.26714146 0.23916823 prediction 0.409521380106436 Functional Loss - ZNF155 ENSG00000204920 CDS Human protein_coding chr19:44500310 chr19:44500313 stopgain 0.031 0 24 hm5C_associated_SNPs_94489 0 0 1 0 1 ZNF155 chr19:44500245 3'AG 44500245 Downstream 69bp
chr5 176491539 176491539 1 + T C rs143189601 176491538 + 176491518 176491558 41 CAAAAACAGTGGCATCATCCCTGGGCCAGATTCCAATGCAA CAAAAACAGTGGCATCATCCCCGGGCCAGATTCCAATGCAA < 41bp 0.70476046421451 0.468744191683661 0.75727713 0.85709697 prediction 0.40952092842902 Functional Loss - ZNF346 ENSG00000113761 CDS Human protein_coding chr5:176491538 chr5:176491539 nonsynonymous SNV 0.564 2 22 hm5C_associated_SNPs_94490 0 0 1 0 2 ZNF346 chr5:176491513 3'AG 176491513 Downstream 27bp
chr5 176491539 176491539 1 + T C rs143189601 176491538 + 176491518 176491558 41 CAAAAACAGTGGCATCATCCCTGGGCCAGATTCCAATGCAA CAAAAACAGTGGCATCATCCCCGGGCCAGATTCCAATGCAA < 41bp 0.70476046421451 0.468744191683661 0.75727713 0.85709697 prediction 0.40952092842902 Functional Loss - ZNF346 ENSG00000113761 CDS Human protein_coding chr5:176491538 chr5:176491539 nonsynonymous SNV 0.564 2 22 hm5C_associated_SNPs_94490 0 0 1 0 2 ZNF346 chr5:176491602 5'GT 176491602 Upstream 64bp
chr5 176491541 176491541 1 + G T LUSC 176491538 + 176491518 176491558 41 CAAAAACAGTGGCATCATCCCTGGGCCAGATTCCAATGCAA CAAAAACAGTGGCATCATCCCTGTGCCAGATTCCAATGCAA < 41bp 0.70476046421451 0.311557433275501 0.75727713 0.2079294 prediction 0.40952092842902 Functional Loss - ZNF346 ENSG00000113761 CDS Human protein_coding chr5:176491538 chr5:176491541 nonsynonymous SNV 0.719 2 24 hm5C_associated_SNPs_94491 0 0 1 0 2 ZNF346 chr5:176491513 3'AG 176491513 Downstream 29bp
chr5 176491541 176491541 1 + G T LUSC 176491538 + 176491518 176491558 41 CAAAAACAGTGGCATCATCCCTGGGCCAGATTCCAATGCAA CAAAAACAGTGGCATCATCCCTGTGCCAGATTCCAATGCAA < 41bp 0.70476046421451 0.311557433275501 0.75727713 0.2079294 prediction 0.40952092842902 Functional Loss - ZNF346 ENSG00000113761 CDS Human protein_coding chr5:176491538 chr5:176491541 nonsynonymous SNV 0.719 2 24 hm5C_associated_SNPs_94491 0 0 1 0 2 ZNF346 chr5:176491602 5'GT 176491602 Upstream 62bp
chr16 84879461 84879461 1 + A C UCEC 84879460 + 84879440 84879480 41 TGCATCTGGGAGCACGGGCCCACCAGTCTGCTGGTGTCCAT TGCATCTGGGAGCACGGGCCCCCCAGTCTGCTGGTGTCCAT < 41bp 0.839146329601906 0.634386077285407 0.12779236 0.07450387 prediction 0.409520504632997 Functional Loss - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84879460 chr16:84879461 nonsynonymous SNV 0.155 0 22 hm5C_associated_SNPs_94492 0 0 0 0 2 CRISPLD2 chr16:84879392 3'AG 84879392 Downstream 70bp
chr16 84879461 84879461 1 + A C UCEC 84879460 + 84879440 84879480 41 TGCATCTGGGAGCACGGGCCCACCAGTCTGCTGGTGTCCAT TGCATCTGGGAGCACGGGCCCCCCAGTCTGCTGGTGTCCAT < 41bp 0.839146329601906 0.634386077285407 0.12779236 0.07450387 prediction 0.409520504632997 Functional Loss - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84879460 chr16:84879461 nonsynonymous SNV 0.155 0 22 hm5C_associated_SNPs_94492 0 0 0 0 2 CRISPLD2 chr16:84879510 5'GT 84879510 Upstream 50bp
chr12 3649954 3649954 1 + C T rs77935028 3649952 + 3649932 3649972 41 CCTATGCCCACTTTGGGATCCACGAGGTAAAGTGTCCCGAG CCTATGCCCACTTTGGGATCCATGAGGTAAAGTGTCCCGAG < 41bp 0.867920424423036 0.663160562902308 0.38178355 0.34258217 prediction 0.409519723041456 Functional Loss - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3649952 chr12:3649954 synonymous SNV . 0 23 hm5C_associated_SNPs_94493 0 0 0 0 1 PRMT8 chr12:3649957 5'GT 3649957 Upstream 4bp
chr1 154247884 154247884 1 + C T SKCM 154247881 + 154247861 154247901 41 CTTTGTAGATAGTGGAGGAGCGCCGGACTGTGGTGGACAGT CTTTGTAGATAGTGGAGGAGCGCTGGACTGTGGTGGACAGT < 41bp 0.704754135894984 0.485356393440868 0.28845245 0.083212644 prediction 0.409508271789969 Functional Loss - HAX1 ENSG00000143575 CDS Human protein_coding chr1:154247881 chr1:154247884 nonsynonymous SNV 0.921 2 24 hm5C_associated_SNPs_94495 0 0 1 0 2 HAX1 chr1:154247869 3'AG 154247869 Downstream 16bp
chr1 154247884 154247884 1 + C T SKCM 154247881 + 154247861 154247901 41 CTTTGTAGATAGTGGAGGAGCGCCGGACTGTGGTGGACAGT CTTTGTAGATAGTGGAGGAGCGCTGGACTGTGGTGGACAGT < 41bp 0.704754135894984 0.485356393440868 0.28845245 0.083212644 prediction 0.409508271789969 Functional Loss - HAX1 ENSG00000143575 CDS Human protein_coding chr1:154247881 chr1:154247884 nonsynonymous SNV 0.921 2 24 hm5C_associated_SNPs_94495 0 0 1 0 2 HAX1 chr1:154247959 5'GT 154247959 Upstream 76bp
chr16 69970276 69970276 1 + G A SKCM 69970273 + 69970253 69970293 41 TCATCCAGGACATGGAGATACTGGGCAAGGTGACGACCCAC TCATCCAGGACATGGAGATACTGAGCAAGGTGACGACCCAC < 41bp 0.814876597423745 0.610124458004424 0.70878375 0.7573838 prediction 0.409504278838641 Functional Loss - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69970273 chr16:69970276 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_94497 0 0 1 0 2 WWP2 chr16:69970215 3'AG 69970215 Downstream 62bp
chr16 69970276 69970276 1 + G A SKCM 69970273 + 69970253 69970293 41 TCATCCAGGACATGGAGATACTGGGCAAGGTGACGACCCAC TCATCCAGGACATGGAGATACTGAGCAAGGTGACGACCCAC < 41bp 0.814876597423745 0.610124458004424 0.70878375 0.7573838 prediction 0.409504278838641 Functional Loss - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69970273 chr16:69970276 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_94497 0 0 1 0 2 WWP2 chr16:69970355 5'GT 69970355 Upstream 80bp
chr11 93914021 93914021 1 + G A STAD 93914018 + 93913998 93914038 41 AGAATGCCCGACAGAGACTTCTGGATTCTTCTTGCTGATGA AGAATGCCCGACAGAGACTTCTGAATTCTTCTTGCTGATGA < 41bp 0.765851053855822 0.561100139350053 0.26830745 0.15342632 prediction 0.409501829011538 Functional Loss - PANX1 ENSG00000110218 CDS Human protein_coding chr11:93914018 chr11:93914021 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_94499 0 0 1 0 2 PANX1 chr11:93913956 3'AG 93913956 Downstream 66bp
chr11 93914021 93914021 1 + G A STAD 93914018 + 93913998 93914038 41 AGAATGCCCGACAGAGACTTCTGGATTCTTCTTGCTGATGA AGAATGCCCGACAGAGACTTCTGAATTCTTCTTGCTGATGA < 41bp 0.765851053855822 0.561100139350053 0.26830745 0.15342632 prediction 0.409501829011538 Functional Loss - PANX1 ENSG00000110218 CDS Human protein_coding chr11:93914018 chr11:93914021 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_94499 0 0 1 0 2 PANX1 chr11:93913968 3'AG 93913968 Downstream 54bp
chr7 36338682 36338682 1 + G T LUAD 36338680 + 36338660 36338700 41 CCGGATAACTGGTCTTGGGGCGGGGTGGCTTCTGAACACTG CCGGATAACTGGTCTTGGGGCGTGGTGGCTTCTGAACACTG < 41bp 0.704744371729681 0.354070401658882 0.9186715 0.8819047 prediction 0.409488743459361 Functional Loss - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36338680 chr7:36338682 nonsynonymous SNV 0.923 5 23 hm5C_associated_SNPs_94503 0 0 0 0 1 EEPD1 chr7:36338616 3'AG 36338616 Downstream 67bp
chr17 47210575 47210575 1 + G C rs527840701 47210574 + 47210554 47210594 41 CTGCCCACGGGAGGAGCCGCCGTCAGGGGTATGTGAGTGCC CTGCCCACGGGAGGAGCCGCCCTCAGGGGTATGTGAGTGCC < 41bp 0.704743286669124 0.394001058205212 0.64435095 0.12209591 prediction 0.409486573338248 Functional Loss - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47210574 chr17:47210575 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_94505 0 0 0 0 1 B4GALNT2 chr17:47210581 5'GT 47210581 Upstream 7bp
chr21 30415863 30415863 1 + T C LUAD 30415862 + 30415842 30415882 41 AGAGAGAAGTGATATTCCTTCTGGAACAAGTAAGCACTTAC AGAGAGAAGTGATATTCCTTCCGGAACAAGTAAGCACTTAC < 41bp 0.827092526323952 0.622351663995889 0.11356461 0.21873343 prediction 0.409481724656126 Functional Loss - USP16 ENSG00000156256 CDS Human protein_coding chr21:30415862 chr21:30415863 synonymous SNV . 0 22 hm5C_associated_SNPs_94507 0 0 1 0 1 USP16 chr21:30415920 5'GT 30415920 Upstream 58bp
chr2 29240795 29240795 1 + G A SKCM 29240792 + 29240772 29240812 41 CCAGCATCCCCATCAGCCGGCAGGAGCCCCGCTTTGCCCGC CCAGCATCCCCATCAGCCGGCAGAAGCCCCGCTTTGCCCGC < 41bp 0.821357763466524 0.616617831414648 0.9085038 0.8650578 prediction 0.409479864103751 Functional Loss - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29240792 chr2:29240795 nonsynonymous SNV 0.707 0 24 hm5C_associated_SNPs_94508 0 0 0 0 1 TOGARAM2 chr2:29240822 5'GT 29240822 Upstream 28bp
chr3 133169162 133169162 1 + C T UCEC 133169159 + 133169139 133169179 41 GTTTTCAGGATGTGAAGCTGCTGCACAAACAGTTGGCAGGG GTTTTCAGGATGTGAAGCTGCTGTACAAACAGTTGGCAGGG < 41bp 0.75987140276407 0.555140352110552 0.3187344 0.25289565 prediction 0.409462101307037 Functional Loss - BFSP2 ENSG00000170819 CDS Human protein_coding chr3:133169159 chr3:133169162 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_94515 0 0 0 0 1 BFSP2 chr3:133169147 3'AG 133169147 Downstream 16bp
chr12 93162794 93162794 1 + G A GBM 93162791 + 93162771 93162811 41 GAAATGCTTTTCTTATACAACACGAAAACAGATATCGACAG GAAATGCTTTTCTTATACAACACAAAAACAGATATCGACAG < 41bp 0.759375289596992 0.554645565915825 0.019360721 0.0075960755 prediction 0.409459447362333 Functional Loss - PLEKHG7 ENSG00000187510 CDS Human protein_coding chr12:93162791 chr12:93162794 nonsynonymous SNV 0.076 2 24 hm5C_associated_SNPs_94517 0 0 0 0 2 PLEKHG7 chr12:93162759 3'AG 93162759 Downstream 36bp
chr12 93162794 93162794 1 + G A GBM 93162791 + 93162771 93162811 41 GAAATGCTTTTCTTATACAACACGAAAACAGATATCGACAG GAAATGCTTTTCTTATACAACACAAAAACAGATATCGACAG < 41bp 0.759375289596992 0.554645565915825 0.019360721 0.0075960755 prediction 0.409459447362333 Functional Loss - PLEKHG7 ENSG00000187510 CDS Human protein_coding chr12:93162791 chr12:93162794 nonsynonymous SNV 0.076 2 24 hm5C_associated_SNPs_94517 0 0 0 0 2 PLEKHG7 chr12:93162856 5'GT 93162856 Upstream 63bp
chr11 67187016 67187016 1 - C A LUSC 67187019 - 67186999 67187039 41 CCACTGCACCCAGCTCTGCCCGCGGGTGCAGACGCCATGCC CCACTGCACCCAGCTCTGCCCGCTGGTGCAGACGCCATGCC < 41bp 0.940061855901128 0.735332645736701 0.9170952 0.44994596 prediction 0.409458420328854 Functional Loss - CARNS1 ENSG00000172508;ENSG00000172531 CDS Human other chr11:67187019 chr11:67187016 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_94518 0 0 0 0 1 CARNS1 chr11:67187068 3'AG 67187068 Downstream 53bp
chr14 103574821 103574821 1 + T C OV 103574820 + 103574800 103574840 41 AAGATGACATCCAGCGGCACCTGGAGACTCTTATCCGGAGC AAGATGACATCCAGCGGCACCCGGAGACTCTTATCCGGAGC < 41bp 0.832355724869537 0.62762684304554 0.66131175 0.8619168 prediction 0.409457763647994 Functional Loss - EXOC3L4 ENSG00000205436 CDS Human protein_coding chr14:103574820 chr14:103574821 nonsynonymous SNV 0.918 3 22 hm5C_associated_SNPs_94520 0 0 1 0 1 EXOC3L4 chr14:103574854 5'GT 103574854 Upstream 34bp
chr19 4212493 4212493 1 + C T rs116237134 4212490 + 4212470 4212510 41 AGTCCCCGGAGGCCAGCTCCCTGCACATCCTGGAGAGACAG AGTCCCCGGAGGCCAGCTCCCTGTACATCCTGGAGAGACAG < 41bp 0.75506347359676 0.550335500279465 0.2695158 0.29088598 prediction 0.409455946634589 Functional Loss - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4212490 chr19:4212493 nonsynonymous SNV 0.940 2 24 hm5C_associated_SNPs_94521 0 0 0 0 2 ANKRD24 chr19:4212472 3'AG 4212472 Downstream 22bp
chr19 4212493 4212493 1 + C T rs116237134 4212490 + 4212470 4212510 41 AGTCCCCGGAGGCCAGCTCCCTGCACATCCTGGAGAGACAG AGTCCCCGGAGGCCAGCTCCCTGTACATCCTGGAGAGACAG < 41bp 0.75506347359676 0.550335500279465 0.2695158 0.29088598 prediction 0.409455946634589 Functional Loss - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4212490 chr19:4212493 nonsynonymous SNV 0.940 2 24 hm5C_associated_SNPs_94521 0 0 0 0 2 ANKRD24 chr19:4212510 5'GT 4212510 Upstream 18bp
chr2 102626230 102626230 1 + G T LUAD 102626226 + 102626206 102626246 41 ACACGGATGTGGGCCCAGGACGGTGCTCTGTGGCTTCTGCC ACACGGATGTGGGCCCAGGACGGTTCTCTGTGGCTTCTGCC < 41bp 0.75762281431441 0.552898694323787 0.47187144 0.31775042 prediction 0.409448239981247 Functional Loss - IL1R2 ENSG00000115590 CDS Human protein_coding chr2:102626226 chr2:102626230 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_94524 0 0 0 0 2 IL1R2 chr2:102626184 3'AG 102626184 Downstream 47bp
chr2 102626230 102626230 1 + G T LUAD 102626226 + 102626206 102626246 41 ACACGGATGTGGGCCCAGGACGGTGCTCTGTGGCTTCTGCC ACACGGATGTGGGCCCAGGACGGTTCTCTGTGGCTTCTGCC < 41bp 0.75762281431441 0.552898694323787 0.47187144 0.31775042 prediction 0.409448239981247 Functional Loss - IL1R2 ENSG00000115590 CDS Human protein_coding chr2:102626226 chr2:102626230 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_94524 0 0 0 0 2 IL1R2 chr2:102626288 5'GT 102626288 Upstream 59bp
chr1 152975724 152975724 1 + G T UCEC 152975721 + 152975701 152975741 41 GTCCCTGAGCCAGGCTGTACCAAGGTCCCTGAGCCAGGTTG GTCCCTGAGCCAGGCTGTACCAATGTCCCTGAGCCAGGTTG < 41bp 0.941009504963023 0.736285510368851 0.91703355 0.3245929 prediction 0.409447989188344 Functional Loss - SPRR3 ENSG00000163209 CDS Human protein_coding chr1:152975721 chr1:152975724 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_94525 0 0 0 0 1 SPRR3 chr1:152975701 3'AG 152975701 Downstream 24bp
chr10 5951256 5951256 1 + G A SKCM 5951253 + 5951233 5951273 41 CCCCGACCTCTACGCTGCTGCCGGGGTAGGTCTGGAGGCTG CCCCGACCTCTACGCTGCTGCCGAGGTAGGTCTGGAGGCTG < 41bp 0.704723592897671 0.44453674429363 0.90265036 0.8764913 prediction 0.409447185795343 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5951253 chr10:5951256 nonsynonymous SNV 0.080 1 24 hm5C_associated_SNPs_94527 0 0 1 0 1 FBXO18 chr10:5951257 5'GT 5951257 Upstream 2bp
chr12 29469874 29469874 1 + G A HNSC 29469871 + 29469851 29469891 41 AACAGCTTCACATCACAGTACTGGAATGCGGTCAGCCACCG AACAGCTTCACATCACAGTACTGAAATGCGGTCAGCCACCG < 41bp 0.815192179151104 0.610469827172141 0.26783785 0.15529841 prediction 0.409444703957926 Functional Loss - FAR2 ENSG00000064763 CDS Human protein_coding chr12:29469871 chr12:29469874 stopgain 0.417 1 24 hm5C_associated_SNPs_94529 0 0 0 0 1 FAR2 chr12:29469945 5'GT 29469945 Upstream 72bp
chr11 130342993 130342993 1 + C T rs80249996 130342990 + 130342970 130343010 41 CCCGCAGGCGCCTCAAGCATCGACATCCGCCAGCGCGGTTA CCCGCAGGCGCCTCAAGCATCGATATCCGCCAGCGCGGTTA < 41bp 0.721781255321974 0.517060962077561 0.4700098 0.37339142 prediction 0.409440586488826 Functional Loss - ADAMTS15 ENSG00000166106 CDS Human protein_coding chr11:130342990 chr11:130342993 synonymous SNV . 0 24 hm5C_associated_SNPs_94531 0 0 0 0 1 ADAMTS15 chr11:130342942 3'AG 130342942 Downstream 52bp
chr5 131606686 131606686 1 + C T SKCM 131606684 + 131606664 131606704 41 TGGCAGACCAAGCCTGGGATCTCCATATGGACAACCCCCTC TGGCAGACCAAGCCTGGGATCTTCATATGGACAACCCCCTC < 41bp 0.876777450949519 0.672057274245282 0.9593685 0.4995723 prediction 0.409440353408474 Functional Loss - PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131606684 chr5:131606686 nonsynonymous SNV 0.980 1 23 hm5C_associated_SNPs_94532 0 0 0 0 1 PDLIM4 chr5:131606608 3'AG 131606608 Downstream 79bp
chr16 66436590 66436590 1 + C T SKCM 66436587 + 66436567 66436607 41 TCATCTTCCTGCGGCGGCGGCTCCGGAAGCAGGCCCGCGCG TCATCTTCCTGCGGCGGCGGCTCTGGAAGCAGGCCCGCGCG < 41bp 0.770043539662812 0.565326607304401 0.8836582 0.7591264 prediction 0.409433864716821 Functional Loss - CDH5 ENSG00000179776 CDS Human protein_coding chr16:66436587 chr16:66436590 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_94533 0 0 0 0 1 CDH5 chr16:66436555 3'AG 66436555 Downstream 36bp
chr18 62090025 62090025 1 + C T rs149336139 62090023 + 62090003 62090043 41 TGAAGAGAATGCTTCTCTAGCACGAGTTCAATATGATGTAA TGAAGAGAATGCTTCTCTAGCATGAGTTCAATATGATGTAA < 41bp 0.771241799005584 0.566526879953661 0.18580613 0.25917318 prediction 0.409429838103846 Functional Loss - LINC01924 ENSG00000267134 ncRNA_exonic Human lincRNA chr18:62090023 chr18:62090025 . . 0 23 hm5C_associated_SNPs_94535 0 0 0 0 2 LINC01924 chr18:62089965 3'AG 62089965 Downstream 61bp
chr18 62090025 62090025 1 + C T rs149336139 62090023 + 62090003 62090043 41 TGAAGAGAATGCTTCTCTAGCACGAGTTCAATATGATGTAA TGAAGAGAATGCTTCTCTAGCATGAGTTCAATATGATGTAA < 41bp 0.771241799005584 0.566526879953661 0.18580613 0.25917318 prediction 0.409429838103846 Functional Loss - LINC01924 ENSG00000267134 ncRNA_exonic Human lincRNA chr18:62090023 chr18:62090025 . . 0 23 hm5C_associated_SNPs_94535 0 0 0 0 2 LINC01924 chr18:62090039 5'GT 62090039 Upstream 15bp
chr8 21859729 21859729 1 + G T STAD 21859727 + 21859707 21859747 41 AGAGGACCACACCCCTGAACCAGGAGAGCGACCGCTTTCTG AGAGGACCACACCCCTGAACCATGAGAGCGACCGCTTTCTG < 41bp 0.915978676029465 0.711264327981127 0.90574694 0.10446313 prediction 0.409428696096675 Functional Loss - XPO7 ENSG00000130227 CDS Human protein_coding chr8:21859727 chr8:21859729 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_94536 0 0 1 0 1 XPO7 chr8:21859783 5'GT 21859783 Upstream 55bp
chr17 9501619 9501619 1 + G A SKCM 9501616 + 9501596 9501636 41 CTGGCCAACTGAGTGCCAAACAGGACAGTTGAAAAGAATAG CTGGCCAACTGAGTGCCAAACAGAACAGTTGAAAAGAATAG < 41bp 0.704713417300454 0.474985562852548 0.76448864 0.6169876 prediction 0.409426834600909 Functional Loss - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9501616 chr17:9501619 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_94539 0 0 0 0 2 CFAP52 chr17:9501551 3'AG 9501551 Downstream 69bp
chr17 9501619 9501619 1 + G A SKCM 9501616 + 9501596 9501636 41 CTGGCCAACTGAGTGCCAAACAGGACAGTTGAAAAGAATAG CTGGCCAACTGAGTGCCAAACAGAACAGTTGAAAAGAATAG < 41bp 0.704713417300454 0.474985562852548 0.76448864 0.6169876 prediction 0.409426834600909 Functional Loss - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9501616 chr17:9501619 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_94539 0 0 0 0 2 CFAP52 chr17:9501650 5'GT 9501650 Upstream 32bp
chr19 7593048 7593048 1 + C T rs73003348 7593046 + 7593026 7593066 41 CCCAACTGGCCCCCACAGATCACGTTTGACAACAAAGCACA CCCAACTGGCCCCCACAGATCATGTTTGACAACAAAGCACA < 41bp 0.704712577277434 0.438355222110965 0.1281519 0.09499693 prediction 0.409425154554868 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7593046 chr19:7593048 nonsynonymous SNV 0.914 1 23 hm5C_associated_SNPs_94541 2 0 0 0 2 MCOLN1 chr19:7593044 3'AG 7593044 Downstream 5bp
chr19 7593048 7593048 1 + C T rs73003348 7593046 + 7593026 7593066 41 CCCAACTGGCCCCCACAGATCACGTTTGACAACAAAGCACA CCCAACTGGCCCCCACAGATCATGTTTGACAACAAAGCACA < 41bp 0.704712577277434 0.438355222110965 0.1281519 0.09499693 prediction 0.409425154554868 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7593046 chr19:7593048 nonsynonymous SNV 0.914 1 23 hm5C_associated_SNPs_94541 2 0 0 0 2 MCOLN1 chr19:7593143 5'GT 7593143 Upstream 96bp
chr19 7593049 7593049 1 + G A BRCA 7593046 + 7593026 7593066 41 CCCAACTGGCCCCCACAGATCACGTTTGACAACAAAGCACA CCCAACTGGCCCCCACAGATCACATTTGACAACAAAGCACA < 41bp 0.704712577277434 0.452289287663741 0.1281519 0.054376334 prediction 0.409425154554868 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7593046 chr19:7593049 synonymous SNV . 0 24 hm5C_associated_SNPs_94542 1 0 0 0 2 MCOLN1 chr19:7593044 3'AG 7593044 Downstream 6bp
chr19 7593049 7593049 1 + G A BRCA 7593046 + 7593026 7593066 41 CCCAACTGGCCCCCACAGATCACGTTTGACAACAAAGCACA CCCAACTGGCCCCCACAGATCACATTTGACAACAAAGCACA < 41bp 0.704712577277434 0.452289287663741 0.1281519 0.054376334 prediction 0.409425154554868 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7593046 chr19:7593049 synonymous SNV . 0 24 hm5C_associated_SNPs_94542 1 0 0 0 2 MCOLN1 chr19:7593143 5'GT 7593143 Upstream 95bp
chr17 38240878 38240878 1 + C T UCEC 38240876 + 38240856 38240896 41 TTCACAGTGGTTCTAGATGACTCGAAGCGGGTGGCCAAGCG TTCACAGTGGTTCTAGATGACTTGAAGCGGGTGGCCAAGCG < 41bp 0.87729186352942 0.672582012744838 0.90169394 0.24240813 prediction 0.409419701569164 Functional Loss - THRA ENSG00000126351 CDS Human protein_coding chr17:38240876 chr17:38240878 nonsynonymous SNV 0.988 3 23 hm5C_associated_SNPs_94544 0 0 0 0 1 THRA chr17:38240863 3'AG 38240863 Downstream 16bp
chr12 120067627 120067627 1 + C T UCEC 120067624 + 120067604 120067644 41 TGGGTAGCCATCGCCTCCATCATCATTGGCCTTCTCATCAT TGGGTAGCCATCGCCTCCATCATTATTGGCCTTCTCATCAT < 41bp 0.764018979233538 0.55931174031571 0.14268345 0.046390742 prediction 0.409414477835656 Functional Loss - TMEM233 ENSG00000224982 CDS Human protein_coding chr12:120067624 chr12:120067627 synonymous SNV . 0 24 hm5C_associated_SNPs_94545 0 0 0 0 2 TMEM233 chr12:120067541 3'AG 120067541 Downstream 87bp
chr12 120067627 120067627 1 + C T UCEC 120067624 + 120067604 120067644 41 TGGGTAGCCATCGCCTCCATCATCATTGGCCTTCTCATCAT TGGGTAGCCATCGCCTCCATCATTATTGGCCTTCTCATCAT < 41bp 0.764018979233538 0.55931174031571 0.14268345 0.046390742 prediction 0.409414477835656 Functional Loss - TMEM233 ENSG00000224982 CDS Human protein_coding chr12:120067624 chr12:120067627 synonymous SNV . 0 24 hm5C_associated_SNPs_94545 0 0 0 0 2 TMEM233 chr12:120067677 5'GT 120067677 Upstream 51bp
chr2 105123790 105123790 1 + G A rs550813769 105123787 + 105123767 105123807 41 CCCAACTGGGTCTCCCAAGCCTGGGCCACTGAACCATTTCA CCCAACTGGGTCTCCCAAGCCTGAGCCACTGAACCATTTCA < 41bp 0.730446053411885 0.525740112664343 0.3946103 0.2495592 prediction 0.409411881495084 Functional Loss - LINC01102 ENSG00000235597 ncRNA_exonic Human lincRNA chr2:105123787 chr2:105123790 . . 0 24 hm5C_associated_SNPs_94546 0 0 0 1 1 LINC01102 chr2:105123864 5'GT 105123864 Upstream 75bp
chr2 162273514 162273514 1 + G A SKCM 162273511 + 162273491 162273531 41 CCAGTTCTCCTCCACCCAGCCGGGGCTGGTGCCCGGCAAAG CCAGTTCTCCTCCACCCAGCCGGAGCTGGTGCCCGGCAAAG < 41bp 0.83539618808527 0.630694673457196 0.9122797 0.86646634 prediction 0.409403029256148 Functional Loss - TBR1 ENSG00000136535 CDS Human protein_coding chr2:162273511 chr2:162273514 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_94550 0 0 0 0 1 TBR1 chr2:162273613 5'GT 162273613 Upstream 100bp
chr10 71835426 71835426 1 + G A BLCA 71835423 + 71835403 71835443 41 AACTGAAGCAAGATGTCGGGCCGGAGTGGGAAGAAGAAAAT AACTGAAGCAAGATGTCGGGCCGAAGTGGGAAGAAGAAAAT < 41bp 0.70470088480279 0.468746255518506 0.8144928 0.59412634 prediction 0.40940176960558 Functional Loss - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71835423 chr10:71835426 synonymous SNV . 0 24 hm5C_associated_SNPs_94551 0 0 0 0 1 H2AFY2 chr10:71835356 3'AG 71835356 Downstream 71bp
chr10 81681737 81681737 1 + G A rs567367761 81681734 + 81681714 81681754 41 CTGAGATCAGAACTGGACCACACGAAGAAGCGTGAGCTTTC CTGAGATCAGAACTGGACCACACAAAGAAGCGTGAGCTTTC < 41bp 0.774372914895657 0.569672056557908 0.09704304 0.054723352 prediction 0.409401716675497 Functional Loss - BMS1P21;MBL1P ENSG00000242600 ncRNA_exonic Human transcribed_unitary_pseudogene chr10:81681734 chr10:81681737 . . 0 24 hm5C_associated_SNPs_94552 0 0 0 0 1 BMS1P21;MBL1P chr10:81681670 3'AG 81681670 Downstream 68bp
chrX 77373623 77373623 1 + G T UCEC 77373619 + 77373599 77373639 41 GAAGGAGCTGAACTACTTTGCAAAGGCCTTGGAGAGCCCAG GAAGGAGCTGAACTACTTTGCAAATGCCTTGGAGAGCCCAG < 41bp 0.704883197786065 0.500185971934178 0.61801094 0.4353338 prediction 0.409394451703773 Functional Loss - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77373619 chrX:77373623 nonsynonymous SNV 0.985 4 25 hm5C_associated_SNPs_94553 0 0 1 2 2 PGK1 chrX:77373548 3'AG 77373548 Downstream 76bp
chrX 77373623 77373623 1 + G T UCEC 77373619 + 77373599 77373639 41 GAAGGAGCTGAACTACTTTGCAAAGGCCTTGGAGAGCCCAG GAAGGAGCTGAACTACTTTGCAAATGCCTTGGAGAGCCCAG < 41bp 0.704883197786065 0.500185971934178 0.61801094 0.4353338 prediction 0.409394451703773 Functional Loss - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77373619 chrX:77373623 nonsynonymous SNV 0.985 4 25 hm5C_associated_SNPs_94553 0 0 1 2 2 PGK1 chrX:77373667 5'GT 77373667 Upstream 45bp
chr19 8539121 8539121 1 + G A CESC 8539118 + 8539098 8539138 41 GGATCTGGGATGAACATGGGCAGGATAAATGGTAAGCATCG GGATCTGGGATGAACATGGGCAGAATAAATGGTAAGCATCG < 41bp 0.805833614262333 0.601137472508369 0.8049799 0.33293015 prediction 0.409392283507928 Functional Loss - HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8539118 chr19:8539121 synonymous SNV . 0 24 hm5C_associated_SNPs_94554 0 0 1 0 1 HNRNPM chr19:8539051 3'AG 8539051 Downstream 71bp
chr7 31013640 31013640 1 + C T STAD 31013638 + 31013618 31013658 41 GTGGCCGCCTCCCATTTCGCCACCATGACCAACTTCAGCTG GTGGCCGCCTCCCATTTCGCCATCATGACCAACTTCAGCTG < 41bp 0.704694073844219 0.410212370064222 0.069753975 0.051806986 prediction 0.409388147688439 Functional Loss - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31013638 chr7:31013640 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_94556 0 0 0 0 1 GHRHR chr7:31013600 3'AG 31013600 Downstream 41bp
chr1 156873805 156873805 1 + C T UCEC 156873802 + 156873782 156873822 41 AACCCCAGTGATCCCAATACCTGCAGCTTCTGGGAAAGGTG AACCCCAGTGATCCCAATACCTGTAGCTTCTGGGAAAGGTG < 41bp 0.704688266581864 0.492391967429589 0.48641983 0.49450448 prediction 0.409376533163727 Functional Loss - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156873802 chr1:156873805 synonymous SNV . 0 24 hm5C_associated_SNPs_94558 0 0 0 0 2 PEAR1 chr1:156873710 3'AG 156873710 Downstream 96bp
chr1 156873805 156873805 1 + C T UCEC 156873802 + 156873782 156873822 41 AACCCCAGTGATCCCAATACCTGCAGCTTCTGGGAAAGGTG AACCCCAGTGATCCCAATACCTGTAGCTTCTGGGAAAGGTG < 41bp 0.704688266581864 0.492391967429589 0.48641983 0.49450448 prediction 0.409376533163727 Functional Loss - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156873802 chr1:156873805 synonymous SNV . 0 24 hm5C_associated_SNPs_94558 0 0 0 0 2 PEAR1 chr1:156873819 5'GT 156873819 Upstream 15bp
chr6 159687132 159687132 1 + G A LUAD 159687129 + 159687109 159687149 41 TGTCAAGGCGGTGAGCCTATCTGGATCCCATTCGCTTTCAA TGTCAAGGCGGTGAGCCTATCTGAATCCCATTCGCTTTCAA < 41bp 0.807364233718001 0.602676565969234 0.72343355 0.33514035 prediction 0.409375335497534 Functional Loss - FNDC1 ENSG00000164694 CDS Human protein_coding chr6:159687129 chr6:159687132 stopgain 1.000 1 24 hm5C_associated_SNPs_94559 0 0 0 0 1 FNDC1 chr6:159687116 3'AG 159687116 Downstream 17bp
chr14 102918810 102918810 1 + G A STAD 102918807 + 102918787 102918827 41 AGCGCACAGTCGCGGCCCTCCACGGTGCAGCTGCCTCCCGA AGCGCACAGTCGCGGCCCTCCACAGTGCAGCTGCCTCCCGA < 41bp 0.824946221141513 0.620259399269773 0.24707952 0.19451639 prediction 0.40937364374348 Functional Loss - TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102918807 chr14:102918810 synonymous SNV . 0 24 hm5C_associated_SNPs_94560 0 0 0 0 1 TECPR2 chr14:102918731 3'AG 102918731 Downstream 80bp
chr15 40754421 40754421 1 + C T UCEC 40754419 + 40754399 40754439 41 GTGTCCAGCGCCCACGCCCTCGCCGCCGCCGTCGCCGCCGC GTGTCCAGCGCCCACGCCCTCGTCGCCGCCGTCGCCGCCGC < 41bp 0.844756346281152 0.640073144551561 0.36914936 0.41709477 prediction 0.409366403459182 Functional Loss - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40754419 chr15:40754421 synonymous SNV . 0 23 hm5C_associated_SNPs_94561 0 0 0 0 1 BAHD1 chr15:40754493 5'GT 40754493 Upstream 73bp
chr2 99181151 99181151 1 + C T ESCA 99181148 + 99181128 99181168 41 TCATTAAGCTGAGGAACTGCCTGCATGACGACGGCTTCCTG TCATTAAGCTGAGGAACTGCCTGTATGACGACGGCTTCCTG < 41bp 0.787061428244404 0.582378728801291 0.723385 0.39773262 prediction 0.409365398886225 Functional Loss - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99181148 chr2:99181151 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_94562 0 0 1 0 2 INPP4A chr2:99181103 3'AG 99181103 Downstream 49bp
chr2 99181151 99181151 1 + C T ESCA 99181148 + 99181128 99181168 41 TCATTAAGCTGAGGAACTGCCTGCATGACGACGGCTTCCTG TCATTAAGCTGAGGAACTGCCTGTATGACGACGGCTTCCTG < 41bp 0.787061428244404 0.582378728801291 0.723385 0.39773262 prediction 0.409365398886225 Functional Loss - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99181148 chr2:99181151 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_94562 0 0 1 0 2 INPP4A chr2:99181226 5'GT 99181226 Upstream 76bp
chr11 60688429 60688429 1 + C T ESCA 60688426 + 60688406 60688446 41 TTCTTTGCTCTGTCTGGGATCGCCGCACAGCTGCTGAATGC TTCTTTGCTCTGTCTGGGATCGCTGCACAGCTGCTGAATGC < 41bp 0.70468257406577 0.486242043031433 0.90286577 0.35631976 prediction 0.409365148131539 Functional Loss - TMEM109 ENSG00000110108 CDS Human protein_coding chr11:60688426 chr11:60688429 synonymous SNV . 0 24 hm5C_associated_SNPs_94563 0 0 1 0 2 TMEM109 chr11:60688358 3'AG 60688358 Downstream 72bp
chr11 60688429 60688429 1 + C T ESCA 60688426 + 60688406 60688446 41 TTCTTTGCTCTGTCTGGGATCGCCGCACAGCTGCTGAATGC TTCTTTGCTCTGTCTGGGATCGCTGCACAGCTGCTGAATGC < 41bp 0.70468257406577 0.486242043031433 0.90286577 0.35631976 prediction 0.409365148131539 Functional Loss - TMEM109 ENSG00000110108 CDS Human protein_coding chr11:60688426 chr11:60688429 synonymous SNV . 0 24 hm5C_associated_SNPs_94563 0 0 1 0 2 TMEM109 chr11:60688460 5'GT 60688460 Upstream 32bp
chr6 3140701 3140701 1 + G A STAD 3140698 + 3140678 3140718 41 TGAGAAGGATCCTCTGGTCCCACGGTTTCATGCCGACTTCA TGAGAAGGATCCTCTGGTCCCACAGTTTCATGCCGACTTCA < 41bp 0.829446002365309 0.624764535621851 0.28444064 0.085246146 prediction 0.409362933486917 Functional Loss - BPHL ENSG00000137274 CDS Human protein_coding chr6:3140698 chr6:3140701 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_94564 0 0 0 0 2 BPHL chr6:3140620 3'AG 3140620 Downstream 82bp
chr6 3140701 3140701 1 + G A STAD 3140698 + 3140678 3140718 41 TGAGAAGGATCCTCTGGTCCCACGGTTTCATGCCGACTTCA TGAGAAGGATCCTCTGGTCCCACAGTTTCATGCCGACTTCA < 41bp 0.829446002365309 0.624764535621851 0.28444064 0.085246146 prediction 0.409362933486917 Functional Loss - BPHL ENSG00000137274 CDS Human protein_coding chr6:3140698 chr6:3140701 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_94564 0 0 0 0 2 BPHL chr6:3140743 5'GT 3140743 Upstream 43bp
chr9 130486415 130486415 1 + C T rs143735585 130486412 + 130486392 130486432 41 CCGACAGGGGCACCATGTACCGACGGCTCCAGGAGTTCGAT CCGACAGGGGCACCATGTACCGATGGCTCCAGGAGTTCGAT < 41bp 0.707195277365071 0.502513850057008 0.7468524 0.27911496 prediction 0.409362854616125 Functional Loss - TTC16 ENSG00000167094 CDS Human protein_coding chr9:130486412 chr9:130486415 nonsynonymous SNV 0.004 3 24 hm5C_associated_SNPs_94565 0 0 0 0 1 TTC16 chr9:130486399 3'AG 130486399 Downstream 17bp
chr15 40702870 40702870 1 + G T LUAD 40702868 + 40702848 40702888 41 TGGGCTACCTGGAGCATGTGCTGGTGATGGAGGAGATATCC TGGGCTACCTGGAGCATGTGCTTGTGATGGAGGAGATATCC < 41bp 0.704678704336531 0.340716060287313 0.6831597 0.24039537 prediction 0.409357408673062 Functional Loss - IVD ENSG00000128928 CDS Human protein_coding chr15:40702868 chr15:40702870 synonymous SNV . 0 23 hm5C_associated_SNPs_94568 0 0 1 0 1 IVD chr15:40702827 3'AG 40702827 Downstream 44bp
chr5 5306757 5306757 1 + C T UCEC 5306754 + 5306734 5306774 41 AGCCTGGAGCTGGAACGTGCCTGCGCCCCGCTTCCATGCCC AGCCTGGAGCTGGAACGTGCCTGTGCCCCGCTTCCATGCCC < 41bp 0.711096748234753 0.506422586551752 0.14802358 0.06585738 prediction 0.409348323366002 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5306754 chr5:5306757 synonymous SNV . 0 24 hm5C_associated_SNPs_94571 0 0 0 0 1 ADAMTS16 chr5:5306841 5'GT 5306841 Upstream 85bp
chr12 66232315 66232315 1 + G A SKCM 66232312 + 66232292 66232332 41 TTTGCAGAAAGCAGAAGCCACTGGAGAAAAACGGCCAAGAG TTTGCAGAAAGCAGAAGCCACTGAAGAAAAACGGCCAAGAG < 41bp 0.704670427435738 0.491453531740355 0.22245717 0.14757028 prediction 0.409340854871476 Functional Loss - HMGA2 ENSG00000149948 CDS Human protein_coding chr12:66232312 chr12:66232315 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_94574 0 0 1 3 1 HMGA2 chr12:66232349 5'GT 66232349 Upstream 35bp
chr15 77310589 77310589 1 + G C LUAD 77310585 + 77310565 77310605 41 ACATGGAGGAGCTACTGAGGCAGAGGTGAGCTGCTGGGCAG ACATGGAGGAGCTACTGAGGCAGACGTGAGCTGCTGGGCAG < 41bp 0.885101026199032 0.680435164845255 0.83676434 0.73207563 prediction 0.409331722707554 Functional Loss - PSTPIP1 ENSG00000140368 CDS Human protein_coding chr15:77310585 chr15:77310589 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_94575 0 0 0 0 1 PSTPIP1 chr15:77310589 5'GT 77310589 Upstream 1bp
chr7 116312565 116312565 1 + G T rs555011707 116312562 + 116312542 116312582 41 GCTGACTTGCTGAGAGGAGGCGGGGAGGCGCGGAGCGCGCG GCTGACTTGCTGAGAGGAGGCGGTGAGGCGCGGAGCGCGCG < 41bp 0.826155817363217 0.621494043935158 0.9194217 0.87464964 prediction 0.409323546856118 Functional Loss - MET ENSG00000105976 UTR5 Human protein_coding chr7:116312562 chr7:116312565 . . 0 24 hm5C_associated_SNPs_94578 0 0 1 0 1 MET chr7:116312631 5'GT 116312631 Upstream 67bp
chr6 110522885 110522885 1 + C T UCEC 110522882 + 110522862 110522902 41 GCAGCAAAGGAGAACTTTTGCAACATATGGTAAGGTGATAA GCAGCAAAGGAGAACTTTTGCAATATATGGTAAGGTGATAA < 41bp 0.750172998347531 0.545514995083463 0.28424418 0.34320915 prediction 0.409316006528137 Functional Loss - CDC40 ENSG00000168438 CDS Human protein_coding chr6:110522882 chr6:110522885 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_94580 0 0 0 0 1 CDC40 chr6:110522890 5'GT 110522890 Upstream 6bp
chr3 183860063 183860063 1 + G A rs138857267 183860060 + 183860040 183860080 41 AATATCACGCTGCCTGAGGGCTCGGTGATCTCTTTGCACCC AATATCACGCTGCCTGAGGGCTCAGTGATCTCTTTGCACCC < 41bp 0.823678378411145 0.61902442623716 0.32205933 0.24133614 prediction 0.409307904347971 Functional Loss - EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183860060 chr3:183860063 synonymous SNV . 0 24 hm5C_associated_SNPs_94583 1 0 1 0 1 EIF2B5 chr3:183860025 3'AG 183860025 Downstream 39bp
chr19 5131974 5131974 1 + G A STAD 5131971 + 5131951 5131991 41 TCCCCTGGGCCGGCCGCCCACCCGGTCCCCACTGTCGGTGG TCCCCTGGGCCGGCCGCCCACCCAGTCCCCACTGTCGGTGG < 41bp 0.70465014755339 0.448985432292785 0.0471617 0.013756841 prediction 0.409300295106781 Functional Loss - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5131971 chr19:5131974 nonsynonymous SNV 0.598 4 24 hm5C_associated_SNPs_94584 0 0 1 0 1 KDM4B chr19:5131898 3'AG 5131898 Downstream 77bp
chr20 9440420 9440420 1 + G A SKCM 9440417 + 9440397 9440437 41 AAAAGCTACTCATCAATGCCCACGAGCAGCAAACCCAGCAG AAAAGCTACTCATCAATGCCCACAAGCAGCAAACCCAGCAG < 41bp 0.778996242127775 0.574346631589972 0.5760907 0.417708 prediction 0.409299221075605 Functional Loss - PLCB4 ENSG00000101333 CDS Human protein_coding chr20:9440417 chr20:9440420 nonsynonymous SNV 0.867 1 24 hm5C_associated_SNPs_94585 0 0 0 0 1 PLCB4 chr20:9440457 5'GT 9440457 Upstream 38bp
chr19 47763903 47763903 1 + G T LUAD 47763901 + 47763881 47763921 41 ACCCCTCGGCCCCCAGGGGCCAGCAAGGGGGGCCGGACTCC ACCCCTCGGCCCCCAGGGGCCATCAAGGGGGGCCGGACTCC < 41bp 0.918858573805348 0.71420979867352 0.7620809 0.65063107 prediction 0.409297550263656 Functional Loss - CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763901 chr19:47763903 nonsynonymous SNV 0.994 1 23 hm5C_associated_SNPs_94586 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 59bp
chr6 159590734 159590734 1 + T C rs295332 159590733 + 159590713 159590753 41 GTCGCCTCCTCGGCGGCGGCCTCAGGTACGCGCCGCGCCCG GTCGCCTCCTCGGCGGCGGCCCCAGGTACGCGCCGCGCCCG < 41bp 0.752043585643959 0.547395807722679 0.7912785 0.740312 prediction 0.409295555842559 Functional Loss - FNDC1 ENSG00000164694 CDS Human protein_coding chr6:159590733 chr6:159590734 nonsynonymous SNV 0.015 0 22 hm5C_associated_SNPs_94587 0 0 0 0 1 FNDC1 chr6:159590737 5'GT 159590737 Upstream 4bp
chr17 53851103 53851103 1 + C T LUSC 53851100 + 53851080 53851120 41 TGCAGTATGTCTACCTTCGGCAGCGGCGAGACCTGGACATG TGCAGTATGTCTACCTTCGGCAGTGGCGAGACCTGGACATG < 41bp 0.725557960057848 0.520913311741932 0.8129251 0.45915025 prediction 0.409289296631833 Functional Loss - PCTP ENSG00000141179 CDS Human protein_coding chr17:53851100 chr17:53851103 nonsynonymous SNV 0.221 0 24 hm5C_associated_SNPs_94591 0 0 1 0 2 PCTP chr17:53851017 3'AG 53851017 Downstream 87bp
chr17 53851103 53851103 1 + C T LUSC 53851100 + 53851080 53851120 41 TGCAGTATGTCTACCTTCGGCAGCGGCGAGACCTGGACATG TGCAGTATGTCTACCTTCGGCAGTGGCGAGACCTGGACATG < 41bp 0.725557960057848 0.520913311741932 0.8129251 0.45915025 prediction 0.409289296631833 Functional Loss - PCTP ENSG00000141179 CDS Human protein_coding chr17:53851100 chr17:53851103 nonsynonymous SNV 0.221 0 24 hm5C_associated_SNPs_94591 0 0 1 0 2 PCTP chr17:53851085 3'AG 53851085 Downstream 19bp
chr19 2246936 2246936 1 + C T COAD 2246933 + 2246913 2246953 41 GCCACGTCACCGCTTCATGTCTGCGTACGAGCAGAGGATCG GCCACGTCACCGCTTCATGTCTGTGTACGAGCAGAGGATCG < 41bp 0.704641386889164 0.488917284592902 0.13473406 0.052761137 prediction 0.409282773778327 Functional Loss - SF3A2 ENSG00000104897 CDS Human protein_coding chr19:2246933 chr19:2246936 nonsynonymous SNV 0.586 5 24 hm5C_associated_SNPs_94593 0 0 1 0 2 SF3A2 chr19:2246881 3'AG 2246881 Downstream 56bp
chr19 2246936 2246936 1 + C T COAD 2246933 + 2246913 2246953 41 GCCACGTCACCGCTTCATGTCTGCGTACGAGCAGAGGATCG GCCACGTCACCGCTTCATGTCTGTGTACGAGCAGAGGATCG < 41bp 0.704641386889164 0.488917284592902 0.13473406 0.052761137 prediction 0.409282773778327 Functional Loss - SF3A2 ENSG00000104897 CDS Human protein_coding chr19:2246933 chr19:2246936 nonsynonymous SNV 0.586 5 24 hm5C_associated_SNPs_94593 0 0 1 0 2 SF3A2 chr19:2247021 5'GT 2247021 Upstream 86bp
chr15 91473459 91473459 1 + G A rs78215532 91473456 + 91473436 91473476 41 GCGGAAGGGCGAGGGGATTGCGAGTCACCGAGTTTCCCGCG GCGGAAGGGCGAGGGGATTGCGAATCACCGAGTTTCCCGCG < 41bp 0.801128071529152 0.596487379630337 0.6555341 0.45302796 prediction 0.409281383797629 Functional Loss - UNC45A ENSG00000140553 UTR5 Human protein_coding chr15:91473456 chr15:91473459 . . 0 24 hm5C_associated_SNPs_94594 0 0 0 0 1 UNC45A chr15:91473485 5'GT 91473485 Upstream 27bp
chr6 153076443 153076443 1 + C T SKCM 153076440 + 153076420 153076460 41 GATGGAGTTTTCACCAGTGACTTCAGTAAACTCTTGGGTCA GATGGAGTTTTCACCAGTGACTTTAGTAAACTCTTGGGTCA < 41bp 0.777773109153293 0.573132426689706 0.17733598 0.17327863 prediction 0.409281364927174 Functional Loss - VIP ENSG00000146469 CDS Human protein_coding chr6:153076440 chr6:153076443 synonymous SNV . 0 24 hm5C_associated_SNPs_94595 0 0 0 0 2 VIP chr6:153076404 3'AG 153076404 Downstream 40bp
chr6 153076443 153076443 1 + C T SKCM 153076440 + 153076420 153076460 41 GATGGAGTTTTCACCAGTGACTTCAGTAAACTCTTGGGTCA GATGGAGTTTTCACCAGTGACTTTAGTAAACTCTTGGGTCA < 41bp 0.777773109153293 0.573132426689706 0.17733598 0.17327863 prediction 0.409281364927174 Functional Loss - VIP ENSG00000146469 CDS Human protein_coding chr6:153076440 chr6:153076443 synonymous SNV . 0 24 hm5C_associated_SNPs_94595 0 0 0 0 2 VIP chr6:153076508 5'GT 153076508 Upstream 66bp
chr1 101194693 101194693 1 + G A LUSC 101194690 + 101194670 101194710 41 ATTTACTGTTGAGATCTCCCCTGGACCCCGGATTGCTGCTC ATTTACTGTTGAGATCTCCCCTGAACCCCGGATTGCTGCTC < 41bp 0.805958192365907 0.60132111631254 0.76484686 0.33776325 prediction 0.409274152106734 Functional Loss - VCAM1 ENSG00000162692 CDS Human protein_coding chr1:101194690 chr1:101194693 nonsynonymous SNV 0.131 2 24 hm5C_associated_SNPs_94596 0 0 0 0 1 VCAM1 chr1:101194663 3'AG 101194663 Downstream 31bp
chr20 61937376 61937376 1 + G A SKCM 61937373 + 61937353 61937393 41 AAGTTGCCTTCACACCAAGCCAGGATCCGCGCACTCCTGGT AAGTTGCCTTCACACCAAGCCAGAATCCGCGCACTCCTGGT < 41bp 0.704630558953242 0.450042554892724 0.7736175 0.32384998 prediction 0.409261117906485 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61937373 chr20:61937376 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_94598 0 0 0 0 1 COL20A1 chr20:61937391 5'GT 61937391 Upstream 16bp
chr11 122722437 122722437 1 + C T SKCM 122722435 + 122722415 122722455 41 AAATACCAGCTTCTTCATCACTCGGCCAATCAGCTCTCCAT AAATACCAGCTTCTTCATCACTTGGCCAATCAGCTCTCCAT < 41bp 0.704627200058901 0.424558434958752 0.106215596 0.09012306 prediction 0.409254400117801 Functional Loss - CRTAM ENSG00000109943 CDS Human protein_coding chr11:122722435 chr11:122722437 nonsynonymous SNV 0.044 3 23 hm5C_associated_SNPs_94602 0 0 0 0 1 CRTAM chr11:122722401 3'AG 122722401 Downstream 37bp
chr4 156725805 156725805 1 + C T STAD 156725803 + 156725783 156725823 41 TGTCATAGGACAGCGGATGCCTCGATACTGTCTTTTTGGGA TGTCATAGGACAGCGGATGCCTTGATACTGTCTTTTTGGGA < 41bp 0.890269018522072 0.68564249064253 0.7127748 0.044570506 prediction 0.409253055759083 Functional Loss - GUCY1B3 ENSG00000061918 CDS Human protein_coding chr4:156725803 chr4:156725805 stopgain 0.998 1 23 hm5C_associated_SNPs_94604 0 0 0 0 2 GUCY1B3 chr4:156725745 3'AG 156725745 Downstream 61bp
chr4 156725805 156725805 1 + C T STAD 156725803 + 156725783 156725823 41 TGTCATAGGACAGCGGATGCCTCGATACTGTCTTTTTGGGA TGTCATAGGACAGCGGATGCCTTGATACTGTCTTTTTGGGA < 41bp 0.890269018522072 0.68564249064253 0.7127748 0.044570506 prediction 0.409253055759083 Functional Loss - GUCY1B3 ENSG00000061918 CDS Human protein_coding chr4:156725803 chr4:156725805 stopgain 0.998 1 23 hm5C_associated_SNPs_94604 0 0 0 0 2 GUCY1B3 chr4:156725899 5'GT 156725899 Upstream 95bp
chr1 205568357 205568357 1 + G A UCEC 205568354 + 205568334 205568374 41 ATCTTGCTCCTGTTTTTCCACAGGATGCACCCTGGACTCCC ATCTTGCTCCTGTTTTTCCACAGAATGCACCCTGGACTCCC < 41bp 0.804643458731562 0.600017077868015 0.23896015 0.1357095 prediction 0.409252761727095 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205568354 chr1:205568357 synonymous SNV . 0 24 hm5C_associated_SNPs_94605 0 0 0 0 2 MFSD4A chr1:205568259 3'AG 205568259 Downstream 99bp
chr1 205568357 205568357 1 + G A UCEC 205568354 + 205568334 205568374 41 ATCTTGCTCCTGTTTTTCCACAGGATGCACCCTGGACTCCC ATCTTGCTCCTGTTTTTCCACAGAATGCACCCTGGACTCCC < 41bp 0.804643458731562 0.600017077868015 0.23896015 0.1357095 prediction 0.409252761727095 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205568354 chr1:205568357 synonymous SNV . 0 24 hm5C_associated_SNPs_94605 0 0 0 0 2 MFSD4A chr1:205568379 5'GT 205568379 Upstream 23bp
chr3 66431078 66431078 1 - C A rs2279289 66431082 - 66431062 66431102 41 CTGGGTCCTGCCCCGAGTGCCAAGGGTCGCTCTACCCCAGT CTGGGTCCTGCCCCGAGTGCCAAGTGTCGCTCTACCCCAGT < 41bp 0.708312874893928 0.503688206125524 0.91036355 0.7564335 prediction 0.409249337536809 Functional Loss - LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66431082 chr3:66431078 nonsynonymous SNV 0.735 2 25 hm5C_associated_SNPs_94606 0 0 1 0 1 LRIG1 chr3:66431001 5'GT 66431001 Upstream 78bp
chr4 68456610 68456610 1 + G T UCEC 68456607 + 68456587 68456627 41 TTTGTTTCATTGTAGCATTCCAAGAATCAAGCACTACAAAG TTTGTTTCATTGTAGCATTCCAATAATCAAGCACTACAAAG < 41bp 0.704613660938075 0.3354718555146 0.11706701 0.04725212 prediction 0.40922732187615 Functional Loss - STAP1 ENSG00000035720 CDS Human protein_coding chr4:68456607 chr4:68456610 nonsynonymous SNV 0.988 2 24 hm5C_associated_SNPs_94609 0 0 0 0 2 STAP1 chr4:68456602 3'AG 68456602 Downstream 9bp
chr4 68456610 68456610 1 + G T UCEC 68456607 + 68456587 68456627 41 TTTGTTTCATTGTAGCATTCCAAGAATCAAGCACTACAAAG TTTGTTTCATTGTAGCATTCCAATAATCAAGCACTACAAAG < 41bp 0.704613660938075 0.3354718555146 0.11706701 0.04725212 prediction 0.40922732187615 Functional Loss - STAP1 ENSG00000035720 CDS Human protein_coding chr4:68456607 chr4:68456610 nonsynonymous SNV 0.988 2 24 hm5C_associated_SNPs_94609 0 0 0 0 2 STAP1 chr4:68456671 5'GT 68456671 Upstream 62bp
chr16 72130083 72130083 1 + G A LGG 72130080 + 72130060 72130100 41 GGGGACACCAGTGAGGATGCCTCGATCCATCGATTGGAAGG GGGGACACCAGTGAGGATGCCTCAATCCATCGATTGGAAGG < 41bp 0.81200513796521 0.607391543708595 0.5761698 0.35530674 prediction 0.40922718851323 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72130080 chr16:72130083 synonymous SNV . 0 24 hm5C_associated_SNPs_94610 0 0 1 0 1 DHX38 chr16:72130038 3'AG 72130038 Downstream 46bp
chr12 250440 250440 1 + C T GBM 250438 + 250418 250458 41 ACAGCAAGAAGCAGTTCAACCGCGACGTGCTGGAGTGAGTA ACAGCAAGAAGCAGTTCAACCGTGACGTGCTGGAGTGAGTA < 41bp 0.704613419850204 0.42430894195736 0.87357914 0.23455861 prediction 0.409226839700409 Functional Loss - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:250438 chr12:250440 synonymous SNV . 0 23 hm5C_associated_SNPs_94611 0 0 0 0 1 IQSEC3 chr12:250451 5'GT 250451 Upstream 12bp
chr6 111345530 111345530 1 + G A SKCM 111345527 + 111345507 111345547 41 ATGAAAATGCCAAAAGCTCTCAAGGTATATAACTTAGAGCT ATGAAAATGCCAAAAGCTCTCAAAGTATATAACTTAGAGCT < 41bp 0.759055083045038 0.55444211475341 0.90037453 0.2677269 prediction 0.409225936583256 Functional Loss - RPF2 ENSG00000197498 CDS Human protein_coding chr6:111345527 chr6:111345530 synonymous SNV . 0 24 hm5C_associated_SNPs_94612 0 0 1 0 1 RPF2 chr6:111345530 5'GT 111345530 Upstream 1bp
chr17 8168365 8168365 1 + G T UCEC 8168363 + 8168343 8168383 41 AACAGCCAGTCAAGAGCCTGCTGGACCCAAAAGTCGCCGCC AACAGCCAGTCAAGAGCCTGCTTGACCCAAAAGTCGCCGCC < 41bp 0.704605403401739 0.344579251508798 0.83516854 0.5355532 prediction 0.409210806803478 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8168363 chr17:8168365 synonymous SNV . 0 23 hm5C_associated_SNPs_94616 0 0 0 0 1 PFAS chr17:8168443 5'GT 8168443 Upstream 79bp
chr22 37272079 37272079 1 + C T HNSC 37272077 + 37272057 37272097 41 TGTCACCCCCTTAGGGACATCGCGGTGGAGGAAGATCTCAG TGTCACCCCCTTAGGGACATCGTGGTGGAGGAAGATCTCAG < 41bp 0.844952388685291 0.640349038772254 0.8493984 0.76688015 prediction 0.409206699826074 Functional Loss - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37272077 chr22:37272079 nonsynonymous SNV 0.450 2 23 hm5C_associated_SNPs_94619 0 0 0 0 2 NCF4 chr22:37272071 3'AG 37272071 Downstream 9bp
chr22 37272079 37272079 1 + C T HNSC 37272077 + 37272057 37272097 41 TGTCACCCCCTTAGGGACATCGCGGTGGAGGAAGATCTCAG TGTCACCCCCTTAGGGACATCGTGGTGGAGGAAGATCTCAG < 41bp 0.844952388685291 0.640349038772254 0.8493984 0.76688015 prediction 0.409206699826074 Functional Loss - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37272077 chr22:37272079 nonsynonymous SNV 0.450 2 23 hm5C_associated_SNPs_94619 0 0 0 0 2 NCF4 chr22:37272136 5'GT 37272136 Upstream 58bp
chr3 155838593 155838593 1 + G A STAD 155838590 + 155838570 155838610 41 CGCGTCAACTGGCTCTGCTGCGCGAAGTGGAGATGAACTGG CGCGTCAACTGGCTCTGCTGCGCAAAGTGGAGATGAACTGG < 41bp 0.79592332425907 0.591322190446676 0.38943166 0.31426626 prediction 0.409202267624788 Functional Loss - KCNAB1 ENSG00000169282 CDS Human protein_coding chr3:155838590 chr3:155838593 nonsynonymous SNV 0.086 1 24 hm5C_associated_SNPs_94622 0 0 0 0 1 KCNAB1 chr3:155838675 5'GT 155838675 Upstream 83bp
chr5 1214105 1214105 1 + C T LUAD 1214103 + 1214083 1214123 41 CAGCCGGACACCTGGCTGGACGCGGGCGCACAGGTCTTCTT CAGCCGGACACCTGGCTGGACGTGGGCGCACAGGTCTTCTT < 41bp 0.834299077949136 0.629700013259472 0.28849998 0.3629974 prediction 0.409198129379328 Functional Loss - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1214103 chr5:1214105 nonsynonymous SNV 0.288 5 23 hm5C_associated_SNPs_94623 0 0 0 0 2 SLC6A19 chr5:1214068 3'AG 1214068 Downstream 38bp
chr5 1214105 1214105 1 + C T LUAD 1214103 + 1214083 1214123 41 CAGCCGGACACCTGGCTGGACGCGGGCGCACAGGTCTTCTT CAGCCGGACACCTGGCTGGACGTGGGCGCACAGGTCTTCTT < 41bp 0.834299077949136 0.629700013259472 0.28849998 0.3629974 prediction 0.409198129379328 Functional Loss - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1214103 chr5:1214105 nonsynonymous SNV 0.288 5 23 hm5C_associated_SNPs_94623 0 0 0 0 2 SLC6A19 chr5:1214180 5'GT 1214180 Upstream 76bp
chr3 149205420 149205420 1 + G A COAD 149205417 + 149205397 149205437 41 CTCTTTCAGATGTTCACCTCCACGATATTTGCTGTGGTTGG CTCTTTCAGATGTTCACCTCCACAATATTTGCTGTGGTTGG < 41bp 0.793720424327343 0.589124148734806 0.3452391 0.2839496 prediction 0.409192551185076 Functional Loss - TM4SF4 ENSG00000169903 CDS Human protein_coding chr3:149205417 chr3:149205420 synonymous SNV . 0 24 hm5C_associated_SNPs_94624 0 0 0 0 1 TM4SF4 chr3:149205406 3'AG 149205406 Downstream 15bp
chr19 16296542 16296542 1 + C T COAD 16296539 + 16296519 16296559 41 CGGCCTGGACAAGCGGACCCCGGCCCAGGCGGCCTTCGAGA CGGCCTGGACAAGCGGACCCCGGTCCAGGCGGCCTTCGAGA < 41bp 0.70459623945859 0.494907518833405 0.32294112 0.3743456 prediction 0.409192478917179 Functional Loss - FAM32A ENSG00000105058 CDS Human protein_coding chr19:16296539 chr19:16296542 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_94625 0 0 1 0 1 FAM32A chr19:16296576 5'GT 16296576 Upstream 35bp
chr16 19710844 19710844 1 + G A STAD 19710841 + 19710821 19710861 41 CAGGCCCTGAAGCGCCAGAGCTCGTTGGGCCTTTCCTTCTT CAGGCCCTGAAGCGCCAGAGCTCATTGGGCCTTTCCTTCTT < 41bp 0.70459320104462 0.454516449791109 0.08038366 0.087887704 prediction 0.409186402089241 Functional Loss - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19710841 chr16:19710844 synonymous SNV . 0 24 hm5C_associated_SNPs_94628 0 0 1 0 1 C16orf62 chr16:19710824 3'AG 19710824 Downstream 21bp
chr11 71847051 71847051 1 + C T UCEC 71847048 + 71847028 71847068 41 GCTGCTTCTGGCTTTGGTGACTGCTGCGGGGAGTGCCCAGC GCTGCTTCTGGCTTTGGTGACTGTTGCGGGGAGTGCCCAGC < 41bp 0.704591725631777 0.494155124236489 0.3486941 0.1691683 prediction 0.409183451263554 Functional Loss - FOLR3 ENSG00000110203 CDS Human protein_coding chr11:71847048 chr11:71847051 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_94629 0 0 0 0 1 FOLR3 chr11:71846993 3'AG 71846993 Downstream 59bp
chr1 1115671 1115671 1 + A T LUAD 1115667 + 1115647 1115687 41 GGTGGGAAGCCATCGCCCCACAGCACCCGGCCGGGGCCCTT GGTGGGAAGCCATCGCCCCACAGCTCCCGGCCGGGGCCCTT < 41bp 0.899450853249002 0.694859387054496 0.04237348 0.07915577 prediction 0.409182932389012 Functional Loss - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1115667 chr1:1115671 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_94630 0 0 0 0 1 TTLL10 chr1:1115720 5'GT 1115720 Upstream 50bp
chr5 132412369 132412369 1 + G A UCEC 132412366 + 132412346 132412386 41 GTTCTGGCCACTGCATTTGACACGACATTGGGAGGTAGAAA GTTCTGGCCACTGCATTTGACACAACATTGGGAGGTAGAAA < 41bp 0.704591287823656 0.474125080162871 0.026544273 0.018273741 prediction 0.409182575647311 Functional Loss - HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132412366 chr5:132412369 synonymous SNV . 0 24 hm5C_associated_SNPs_94631 0 0 1 0 1 HSPA4 chr5:132412346 3'AG 132412346 Downstream 24bp
chr12 122399998 122399998 1 + G T LUAD 122399994 + 122399974 122400014 41 GTCTGGTACCCACCACTCACCAGGGAACTCTTCCTGCTTAT GTCTGGTACCCACCACTCACCAGGTAACTCTTCCTGCTTAT < 41bp 0.743318099564228 0.538730611875039 0.93246967 0.9355432 prediction 0.409174975378377 Functional Loss - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122399994 chr12:122399998 stopgain 0.995 1 25 hm5C_associated_SNPs_94633 0 0 0 0 1 WDR66 chr12:122400068 5'GT 122400068 Upstream 71bp
chr17 6348680 6348680 1 + G A KIRC 6348677 + 6348657 6348697 41 AGCCAGGTCAGCAGGGCCTCCAGGCTGCAGCTCGCTCAGCT AGCCAGGTCAGCAGGGCCTCCAGACTGCAGCTCGCTCAGCT < 41bp 0.704586071944477 0.451711702812431 0.899639 0.85188746 prediction 0.409172143888954 Functional Loss - PIMREG ENSG00000129195 CDS Human protein_coding chr17:6348677 chr17:6348680 nonsynonymous SNV 0.977 0 24 hm5C_associated_SNPs_94636 0 0 1 0 1 PIMREG chr17:6348724 5'GT 6348724 Upstream 45bp
chr14 21467956 21467956 1 + G T LUAD 21467954 + 21467934 21467974 41 GTATTTCTGCTGGTGTTTTCCTGGGAGCAGGGTTCATGCAT GTATTTCTGCTGGTGTTTTCCTTGGAGCAGGGTTCATGCAT < 41bp 0.918008564110824 0.713425849360268 0.6983134 0.074142694 prediction 0.409165429501111 Functional Loss - SLC39A2 ENSG00000165794 CDS Human protein_coding chr14:21467954 chr14:21467956 synonymous SNV . 0 23 hm5C_associated_SNPs_94638 0 0 0 0 2 SLC39A2 chr14:21467901 3'AG 21467901 Downstream 56bp
chr14 21467956 21467956 1 + G T LUAD 21467954 + 21467934 21467974 41 GTATTTCTGCTGGTGTTTTCCTGGGAGCAGGGTTCATGCAT GTATTTCTGCTGGTGTTTTCCTTGGAGCAGGGTTCATGCAT < 41bp 0.918008564110824 0.713425849360268 0.6983134 0.074142694 prediction 0.409165429501111 Functional Loss - SLC39A2 ENSG00000165794 CDS Human protein_coding chr14:21467954 chr14:21467956 synonymous SNV . 0 23 hm5C_associated_SNPs_94638 0 0 0 0 2 SLC39A2 chr14:21468031 5'GT 21468031 Upstream 76bp
chr4 159606354 159606354 1 + G T UCEC 159606352 + 159606332 159606372 41 CCTTGGTGTTGAAGTATACCCTGGTTATGCAGCTGCTGAGG CCTTGGTGTTGAAGTATACCCTTGTTATGCAGCTGCTGAGG < 41bp 0.704582480480764 0.366090490117791 0.40783027 0.12114555 prediction 0.409164960961527 Functional Loss - ETFDH ENSG00000171503 CDS Human protein_coding chr4:159606352 chr4:159606354 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_94639 0 0 1 0 2 ETFDH chr4:159606304 3'AG 159606304 Downstream 51bp
chr4 159606354 159606354 1 + G T UCEC 159606352 + 159606332 159606372 41 CCTTGGTGTTGAAGTATACCCTGGTTATGCAGCTGCTGAGG CCTTGGTGTTGAAGTATACCCTTGTTATGCAGCTGCTGAGG < 41bp 0.704582480480764 0.366090490117791 0.40783027 0.12114555 prediction 0.409164960961527 Functional Loss - ETFDH ENSG00000171503 CDS Human protein_coding chr4:159606352 chr4:159606354 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_94639 0 0 1 0 2 ETFDH chr4:159606371 5'GT 159606371 Upstream 18bp
chr12 27470900 27470900 1 + G A UCEC 27470897 + 27470877 27470917 41 TGATGAACTGGAAAGAAACTCTGGTATTTCCTCCAGAGGTA TGATGAACTGGAAAGAAACTCTGATATTTCCTCCAGAGGTA < 41bp 0.704582475776912 0.470838294321723 0.07463136 0.049613684 prediction 0.409164951553824 Functional Loss - STK38L ENSG00000211455 CDS Human protein_coding chr12:27470897 chr12:27470900 nonsynonymous SNV 0.986 1 24 hm5C_associated_SNPs_94640 0 0 1 0 2 STK38L chr12:27470829 3'AG 27470829 Downstream 72bp
chr12 27470900 27470900 1 + G A UCEC 27470897 + 27470877 27470917 41 TGATGAACTGGAAAGAAACTCTGGTATTTCCTCCAGAGGTA TGATGAACTGGAAAGAAACTCTGATATTTCCTCCAGAGGTA < 41bp 0.704582475776912 0.470838294321723 0.07463136 0.049613684 prediction 0.409164951553824 Functional Loss - STK38L ENSG00000211455 CDS Human protein_coding chr12:27470897 chr12:27470900 nonsynonymous SNV 0.986 1 24 hm5C_associated_SNPs_94640 0 0 1 0 2 STK38L chr12:27470952 5'GT 27470952 Upstream 53bp
chr16 57741548 57741548 1 + G A GBM 57741545 + 57741525 57741565 41 ATCGAAAGCCTGTGGAACCACAAGAACTACTGGATCAACAT ATCGAAAGCCTGTGGAACCACAAAAACTACTGGATCAACAT < 41bp 0.80966797651409 0.60508731146123 0.51727766 0.60549283 prediction 0.40916133010572 Functional Loss - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57741545 chr16:57741548 synonymous SNV . 0 24 hm5C_associated_SNPs_94642 0 0 0 0 1 DRC7 chr16:57741590 5'GT 57741590 Upstream 43bp
chr19 56490842 56490842 1 + G T LUSC 56490839 + 56490819 56490859 41 AAAACCAACATCTGAGACATCTGGACTTGAGCAAGAATGCG AAAACCAACATCTGAGACATCTGTACTTGAGCAAGAATGCG < 41bp 0.704580183925635 0.309143251351229 0.1814543 0.17600372 prediction 0.40916036785127 Functional Loss - NLRP8 ENSG00000179709 CDS Human protein_coding chr19:56490839 chr19:56490842 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_94643 0 0 0 0 2 NLRP8 chr19:56490760 3'AG 56490760 Downstream 83bp
chr19 56490842 56490842 1 + G T LUSC 56490839 + 56490819 56490859 41 AAAACCAACATCTGAGACATCTGGACTTGAGCAAGAATGCG AAAACCAACATCTGAGACATCTGTACTTGAGCAAGAATGCG < 41bp 0.704580183925635 0.309143251351229 0.1814543 0.17600372 prediction 0.40916036785127 Functional Loss - NLRP8 ENSG00000179709 CDS Human protein_coding chr19:56490839 chr19:56490842 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_94643 0 0 0 0 2 NLRP8 chr19:56490930 5'GT 56490930 Upstream 89bp
chr1 37947348 37947348 1 + G T UCEC 37947344 + 37947324 37947364 41 TCTGACGGGATCGTGGTTTCCAACGACACATACCGTGACCT TCTGACGGGATCGTGGTTTCCAACTACACATACCGTGACCT < 41bp 0.704579165509309 0.499242532837458 0.044090033 0.027209759 prediction 0.409158331018619 Functional Loss - ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947344 chr1:37947348 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_94646 0 0 0 0 1 ZC3H12A chr1:37947436 5'GT 37947436 Upstream 89bp
chr1 37947347 37947347 1 + C T UCEC 37947344 + 37947324 37947364 41 TCTGACGGGATCGTGGTTTCCAACGACACATACCGTGACCT TCTGACGGGATCGTGGTTTCCAATGACACATACCGTGACCT < 41bp 0.704579165509309 0.497034683632418 0.044090033 0.028229803 prediction 0.409158331018619 Functional Loss - ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947344 chr1:37947347 synonymous SNV . 0 24 hm5C_associated_SNPs_94647 0 0 0 0 1 ZC3H12A chr1:37947436 5'GT 37947436 Upstream 90bp
chr3 196449369 196449369 1 + C T GBM 196449366 + 196449346 196449386 41 CTTAATTAAACAGGACATTCCTGCAGGACTTTATGTGGATC CTTAATTAAACAGGACATTCCTGTAGGACTTTATGTGGATC < 41bp 0.789847898489761 0.58526947574336 0.040397674 0.028722793 prediction 0.409156845492802 Functional Loss - PIGX ENSG00000163964 CDS Human protein_coding chr3:196449366 chr3:196449369 nonsynonymous SNV 0.611 0 24 hm5C_associated_SNPs_94648 0 0 1 1 2 PIGX chr3:196449286 3'AG 196449286 Downstream 84bp
chr3 196449369 196449369 1 + C T GBM 196449366 + 196449346 196449386 41 CTTAATTAAACAGGACATTCCTGCAGGACTTTATGTGGATC CTTAATTAAACAGGACATTCCTGTAGGACTTTATGTGGATC < 41bp 0.789847898489761 0.58526947574336 0.040397674 0.028722793 prediction 0.409156845492802 Functional Loss - PIGX ENSG00000163964 CDS Human protein_coding chr3:196449366 chr3:196449369 nonsynonymous SNV 0.611 0 24 hm5C_associated_SNPs_94648 0 0 1 1 2 PIGX chr3:196449427 5'GT 196449427 Upstream 59bp
chr20 23346382 23346382 1 + G A LUAD 23346379 + 23346359 23346399 41 CCGTCCGCGCTCAAGACGCACATGAGGTACGCGGGGAGCCG CCGTCCGCGCTCAAGACGCACATAAGGTACGCGGGGAGCCG < 41bp 0.704575136455271 0.4591029097762 0.7495872 0.27028197 prediction 0.409150272910542 Functional Loss - GZF1 ENSG00000125812 CDS Human protein_coding chr20:23346379 chr20:23346382 nonsynonymous SNV 0.970 1 24 hm5C_associated_SNPs_94650 0 0 0 0 1 GZF1 chr20:23346384 5'GT 23346384 Upstream 3bp
chr19 38780810 38780810 1 + G A COAD 38780807 + 38780787 38780827 41 GCCTTGCCGTGCATCCTTCCCACGCTGGTACTTTGACGTGG GCCTTGCCGTGCATCCTTCCCACACTGGTACTTTGACGTGG < 41bp 0.70457143327557 0.443463764885688 0.067380965 0.0442746 prediction 0.409142866551141 Functional Loss - SPINT2 ENSG00000167642;ENSG00000267748 CDS Human other chr19:38780807 chr19:38780810 nonsynonymous SNV 0.981 4 24 hm5C_associated_SNPs_94652 0 0 1 0 1 SPINT2 chr19:38780759 3'AG 38780759 Downstream 52bp
chr20 42694397 42694397 1 + C T UCEC 42694395 + 42694375 42694415 41 CAAGAGCACTCAGGCAAACCCACCAGCCAAAATGCTCCCAC CAAGAGCACTCAGGCAAACCCATCAGCCAAAATGCTCCCAC < 41bp 0.880399955045922 0.675829197838715 0.30197263 0.1671215 prediction 0.409141514414415 Functional Loss - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42694395 chr20:42694397 nonsynonymous SNV 0.872 1 23 hm5C_associated_SNPs_94653 0 0 0 0 1 TOX2 chr20:42694352 3'AG 42694352 Downstream 46bp
chr20 47846779 47846779 1 + G T LUSC 47846775 + 47846755 47846795 41 TCAGGAAGCAGCTCTTCGGGCAGCGCCTGACATCCTCATCG TCAGGAAGCAGCTCTTCGGGCAGCTCCTGACATCCTCATCG < 41bp 0.747771181641543 0.54320108177136 0.13237333 0.085601 prediction 0.409140199740367 Functional Loss - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47846775 chr20:47846779 synonymous SNV . 0 25 hm5C_associated_SNPs_94655 0 0 1 0 1 DDX27 chr20:47846736 3'AG 47846736 Downstream 44bp
chr2 113955401 113955401 1 + G A STAD 113955398 + 113955378 113955418 41 GAGCCCGTGGGGGTGCACCACTCGCTGGCCACCCCCGCCAC GAGCCCGTGGGGGTGCACCACTCACTGGCCACCCCCGCCAC < 41bp 0.838507331008118 0.633937601059231 0.34004653 0.07044548 prediction 0.409139459897775 Functional Loss - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113955398 chr2:113955401 synonymous SNV . 0 24 hm5C_associated_SNPs_94656 0 0 1 0 3 PSD4 chr2:113955324 3'AG 113955324 Downstream 78bp
chr2 113955401 113955401 1 + G A STAD 113955398 + 113955378 113955418 41 GAGCCCGTGGGGGTGCACCACTCGCTGGCCACCCCCGCCAC GAGCCCGTGGGGGTGCACCACTCACTGGCCACCCCCGCCAC < 41bp 0.838507331008118 0.633937601059231 0.34004653 0.07044548 prediction 0.409139459897775 Functional Loss - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113955398 chr2:113955401 synonymous SNV . 0 24 hm5C_associated_SNPs_94656 0 0 1 0 3 PSD4 chr2:113955327 3'AG 113955327 Downstream 75bp
chr2 113955401 113955401 1 + G A STAD 113955398 + 113955378 113955418 41 GAGCCCGTGGGGGTGCACCACTCGCTGGCCACCCCCGCCAC GAGCCCGTGGGGGTGCACCACTCACTGGCCACCCCCGCCAC < 41bp 0.838507331008118 0.633937601059231 0.34004653 0.07044548 prediction 0.409139459897775 Functional Loss - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113955398 chr2:113955401 synonymous SNV . 0 24 hm5C_associated_SNPs_94656 0 0 1 0 3 PSD4 chr2:113955490 5'GT 113955490 Upstream 90bp
chr16 771923 771923 1 + C T LUAD 771921 + 771901 771941 41 GTGCCGGCAGCGTCTGCTATCGCCGCAAGGATCTCTGGAAG GTGCCGGCAGCGTCTGCTATCGTCGCAAGGATCTCTGGAAG < 41bp 0.813586429842175 0.609018028526423 0.84404635 0.85893893 prediction 0.409136802631505 Functional Loss - FAM173A ENSG00000103254 CDS Human protein_coding chr16:771921 chr16:771923 synonymous SNV . 0 23 hm5C_associated_SNPs_94657 0 0 1 0 1 FAM173A chr16:771941 5'GT 771941 Upstream 19bp
chr7 5965299 5965299 1 + A T rs564562260 5965297 + 5965277 5965317 41 CTTTGTGCAACGCAGTTCAACAACATCTTCTTCTTGGATTG CTTTGTGCAACGCAGTTCAACATCATCTTCTTCTTGGATTG < 41bp 0.725485479449217 0.520917963928891 0.028805465 0.019314438 prediction 0.409135031040652 Functional Loss - CCZ1 ENSG00000122674 CDS Human protein_coding chr7:5965297 chr7:5965299 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_94659 0 0 0 0 1 CCZ1 chr7:5965263 3'AG 5965263 Downstream 37bp
chr14 74009839 74009839 1 + C T rs112441786 74009837 + 74009817 74009857 41 GCCTCTTTCCTGAAGGGCATCACGGCTGCTGTCGTCATCAA GCCTCTTTCCTGAAGGGCATCATGGCTGCTGTCGTCATCAA < 41bp 0.704566379419318 0.452095128423335 0.16382226 0.11212799 prediction 0.409132758838636 Functional Loss - ACOT1 ENSG00000184227 CDS Human protein_coding chr14:74009837 chr14:74009839 nonsynonymous SNV 0.081 3 23 hm5C_associated_SNPs_94660 0 0 0 0 1 ACOT1 chr14:74009754 3'AG 74009754 Downstream 86bp
chr22 21377002 21377002 1 + A T LIHC 21377000 + 21376980 21377020 41 CTGGCTAACTGCTGGGTCGACGAGGACTGCCCCGAAGGGGA CTGGCTAACTGCTGGGTCGACGTGGACTGCCCCGAAGGGGA < 41bp 0.724689277133275 0.520123524790403 0.8484567 0.6806309 prediction 0.409131504685745 Functional Loss - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21377000 chr22:21377002 nonsynonymous SNV 0.931 0 23 hm5C_associated_SNPs_94661 0 0 0 0 2 P2RX6 chr22:21376965 3'AG 21376965 Downstream 38bp
chr22 21377002 21377002 1 + A T LIHC 21377000 + 21376980 21377020 41 CTGGCTAACTGCTGGGTCGACGAGGACTGCCCCGAAGGGGA CTGGCTAACTGCTGGGTCGACGTGGACTGCCCCGAAGGGGA < 41bp 0.724689277133275 0.520123524790403 0.8484567 0.6806309 prediction 0.409131504685745 Functional Loss - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21377000 chr22:21377002 nonsynonymous SNV 0.931 0 23 hm5C_associated_SNPs_94661 0 0 0 0 2 P2RX6 chr22:21377040 5'GT 21377040 Upstream 39bp
chr22 50959459 50959459 1 + C T rs559989268 50959456 + 50959436 50959476 41 GGGGCCCCAGAGCCTGCATCCTGCGTGAAGGTAGGAGTGTT GGGGCCCCAGAGCCTGCATCCTGTGTGAAGGTAGGAGTGTT < 41bp 0.746647412874076 0.54208172432688 0.339185 0.38153362 prediction 0.409131377094391 Functional Loss - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50959456 chr22:50959459 synonymous SNV . 0 24 hm5C_associated_SNPs_94662 0 0 1 0 1 NCAPH2 chr22:50959465 5'GT 50959465 Upstream 7bp
chr2 219494243 219494243 1 + G T SARC 219494239 + 219494219 219494259 41 CGGTGGGGATGGGGTTCTTTCAGGGCCCTGAAGCGGGGGTG CGGTGGGGATGGGGTTCTTTCAGGTCCCTGAAGCGGGGGTG < 41bp 0.735271058875647 0.530706012181214 0.93203795 0.88363534 prediction 0.409130093388865 Functional Loss - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219494239 chr2:219494243 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_94663 0 0 0 0 1 PLCD4 chr2:219494242 3'AG 219494242 Downstream 2bp
chr16 81711959 81711959 1 + C T COAD 81711956 + 81711936 81711976 41 ACCGGAAGCCCACTTTACCTCTGCGCCTTCTGCACCCCAGC ACCGGAAGCCCACTTTACCTCTGTGCCTTCTGCACCCCAGC < 41bp 0.712490981653111 0.507926149993683 0.2902033 0.42438596 prediction 0.409129663318856 Functional Loss - CMIP ENSG00000153815 CDS Human protein_coding chr16:81711956 chr16:81711959 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_94664 0 0 1 0 1 CMIP chr16:81711880 3'AG 81711880 Downstream 80bp
chr14 75928231 75928231 1 + C T UCEC 75928228 + 75928208 75928248 41 AGGAGCGCACGGAGTTTCTGCAGCGGGTGAGCTGACCGGGT AGGAGCGCACGGAGTTTCTGCAGTGGGTGAGCTGACCGGGT < 41bp 0.745874869641694 0.541312091385493 0.60786813 0.34475204 prediction 0.409125556512404 Functional Loss - JDP2 ENSG00000140044 CDS Human protein_coding chr14:75928228 chr14:75928231 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_94665 0 0 1 0 1 JDP2 chr14:75928233 5'GT 75928233 Upstream 3bp
chr1 243419493 243419493 1 + G T UCEC 243419489 + 243419469 243419509 41 TGCGTGCATGGCGAAGTCCCCGGAGAACTCTACCCTGGAGG TGCGTGCATGGCGAAGTCCCCGGATAACTCTACCCTGGAGG < 41bp 0.726269486105566 0.521707052097161 0.87411344 0.87702084 prediction 0.40912486801681 Functional Loss - SDCCAG8 ENSG00000054282 CDS Human protein_coding chr1:243419489 chr1:243419493 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_94666 0 0 1 0 1 SDCCAG8 chr1:243419542 5'GT 243419542 Upstream 50bp
chr9 133271440 133271440 1 + G A rs539203414 133271437 + 133271417 133271457 41 GCAGCACTAGTGTCGCCTTCCGCGTGGAGATCCACAGTGAG GCAGCACTAGTGTCGCCTTCCGCATGGAGATCCACAGTGAG < 41bp 0.704561956897181 0.465276430390965 0.4250246 0.23103324 prediction 0.409123913794362 Functional Loss - HMCN2 ENSG00000148357;ENSG00000215428 intergenic Human other chr9:133271437 chr9:133271440 . 0.698 2 24 hm5C_associated_SNPs_94669 0 0 0 0 1 HMCN2 chr9:133271452 5'GT 133271452 Upstream 13bp
chr5 179155634 179155634 1 + C T UCEC 179155632 + 179155612 179155652 41 ATCACCAAGAAACAGAAAGCCACGAAGAGAGTGAAACAATC ATCACCAAGAAACAGAAAGCCATGAAGAGAGTGAAACAATC < 41bp 0.704558270019937 0.418376648376917 0.22818714 0.30401987 prediction 0.409116540039874 Functional Loss - CANX ENSG00000127022 CDS Human protein_coding chr5:179155632 chr5:179155634 stopgain 1.000 1 23 hm5C_associated_SNPs_94677 0 0 1 0 1 CANX chr5:179155592 3'AG 179155592 Downstream 43bp
chr6 10891800 10891800 1 + G A BLCA 10891797 + 10891777 10891817 41 AAGACAGGACTGGGAAGGCCCAGGATGATGCTTTCTGGGTA AAGACAGGACTGGGAAGGCCCAGAATGATGCTTTCTGGGTA < 41bp 0.81195019617744 0.607393289441012 0.5878676 0.33131823 prediction 0.409113813472856 Functional Loss - SYCP2L ENSG00000153157 CDS Human other chr6:10891797 chr6:10891800 nonsynonymous SNV 0.127 0 24 hm5C_associated_SNPs_94678 0 0 1 0 2 SYCP2L chr6:10891746 3'AG 10891746 Downstream 55bp
chr6 10891800 10891800 1 + G A BLCA 10891797 + 10891777 10891817 41 AAGACAGGACTGGGAAGGCCCAGGATGATGCTTTCTGGGTA AAGACAGGACTGGGAAGGCCCAGAATGATGCTTTCTGGGTA < 41bp 0.81195019617744 0.607393289441012 0.5878676 0.33131823 prediction 0.409113813472856 Functional Loss - SYCP2L ENSG00000153157 CDS Human protein_coding chr6:10891797 chr6:10891800 nonsynonymous SNV 0.127 0 24 hm5C_associated_SNPs_94678 0 0 1 0 2 SYCP2L chr6:10891814 5'GT 10891814 Upstream 15bp
chr1 183209211 183209211 1 + G T STAD 183209209 + 183209189 183209229 41 GAACTTGGAAGCCAATGTGACAGCAGATGGAGCCTTGGCCA GAACTTGGAAGCCAATGTGACATCAGATGGAGCCTTGGCCA < 41bp 0.704551232072419 0.349964369083991 0.53612936 0.32414457 prediction 0.409102464144839 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183209209 chr1:183209211 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_94682 0 0 0 0 1 LAMC2 chr1:183209175 3'AG 183209175 Downstream 37bp
chr19 5776201 5776201 1 + C T rs2290778 5776198 + 5776178 5776218 41 GTGAGCTGCCACGACCCCAACAACAATGCCCCTTTGAGGTG GTGAGCTGCCACGACCCCAACAATAATGCCCCTTTGAGGTG < 41bp 0.704545710069361 0.491111458220716 0.22306201 0.18076563 prediction 0.409091420138721 Functional Loss - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5776198 chr19:5776201 synonymous SNV . 0 24 hm5C_associated_SNPs_94685 0 0 0 0 1 CATSPERD chr19:5776172 3'AG 5776172 Downstream 30bp
chr20 57896155 57896155 1 + A T LUSC 57896151 + 57896131 57896171 41 CGGGGCCACTTCCAGGGAATCTGCAGCTCTCACATCGGCCA CGGGGCCACTTCCAGGGAATCTGCTGCTCTCACATCGGCCA < 41bp 0.911730009609273 0.707187802339807 0.9147215 0.9073198 prediction 0.409084414538931 Functional Loss - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57896151 chr20:57896155 nonsynonymous SNV 0.010 1 25 hm5C_associated_SNPs_94687 0 0 0 0 2 EDN3 chr20:57896072 3'AG 57896072 Downstream 84bp
chr20 57896155 57896155 1 + A T LUSC 57896151 + 57896131 57896171 41 CGGGGCCACTTCCAGGGAATCTGCAGCTCTCACATCGGCCA CGGGGCCACTTCCAGGGAATCTGCTGCTCTCACATCGGCCA < 41bp 0.911730009609273 0.707187802339807 0.9147215 0.9073198 prediction 0.409084414538931 Functional Loss - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57896151 chr20:57896155 nonsynonymous SNV 0.010 1 25 hm5C_associated_SNPs_94687 0 0 0 0 2 EDN3 chr20:57896248 5'GT 57896248 Upstream 94bp
chr12 86272344 86272344 1 + G A UCEC 86272341 + 86272321 86272361 41 CACAGCAGGGCTTTTCAACACTGGGAGGTATAGCAATAACA CACAGCAGGGCTTTTCAACACTGAGAGGTATAGCAATAACA < 41bp 0.781963840134346 0.577421819228835 0.07002777 0.019556463 prediction 0.409084041811024 Functional Loss - NTS ENSG00000133636 CDS Human protein_coding chr12:86272341 chr12:86272344 stopgain 0.997 1 24 hm5C_associated_SNPs_94688 0 0 0 0 1 NTS chr12:86272347 5'GT 86272347 Upstream 4bp
chr4 17524572 17524572 1 + G T ACC 17524570 + 17524550 17524590 41 TCCTGGCCTTGGCCCTGGCTCTGGTCAGCATGGGCTTTGCC TCCTGGCCTTGGCCCTGGCTCTTGTCAGCATGGGCTTTGCC < 41bp 0.704538054772277 0.346185485533578 0.14178538 0.061451465 prediction 0.409076109544555 Functional Loss - CLRN2 ENSG00000249581 CDS Human protein_coding chr4:17524570 chr4:17524572 synonymous SNV . 0 23 hm5C_associated_SNPs_94690 0 0 0 0 2 CLRN2 chr4:17524487 3'AG 17524487 Downstream 86bp
chr4 17524572 17524572 1 + G T ACC 17524570 + 17524550 17524590 41 TCCTGGCCTTGGCCCTGGCTCTGGTCAGCATGGGCTTTGCC TCCTGGCCTTGGCCCTGGCTCTTGTCAGCATGGGCTTTGCC < 41bp 0.704538054772277 0.346185485533578 0.14178538 0.061451465 prediction 0.409076109544555 Functional Loss - CLRN2 ENSG00000249581 CDS Human protein_coding chr4:17524570 chr4:17524572 synonymous SNV . 0 23 hm5C_associated_SNPs_94690 0 0 0 0 2 CLRN2 chr4:17524666 5'GT 17524666 Upstream 95bp
chr4 17524573 17524573 1 + G T LUSC 17524570 + 17524550 17524590 41 TCCTGGCCTTGGCCCTGGCTCTGGTCAGCATGGGCTTTGCC TCCTGGCCTTGGCCCTGGCTCTGTTCAGCATGGGCTTTGCC < 41bp 0.704538054772277 0.298732883559299 0.14178538 0.08773047 prediction 0.409076109544555 Functional Loss - CLRN2 ENSG00000249581 CDS Human protein_coding chr4:17524570 chr4:17524573 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_94691 0 0 0 0 2 CLRN2 chr4:17524487 3'AG 17524487 Downstream 87bp
chr4 17524573 17524573 1 + G T LUSC 17524570 + 17524550 17524590 41 TCCTGGCCTTGGCCCTGGCTCTGGTCAGCATGGGCTTTGCC TCCTGGCCTTGGCCCTGGCTCTGTTCAGCATGGGCTTTGCC < 41bp 0.704538054772277 0.298732883559299 0.14178538 0.08773047 prediction 0.409076109544555 Functional Loss - CLRN2 ENSG00000249581 CDS Human protein_coding chr4:17524570 chr4:17524573 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_94691 0 0 0 0 2 CLRN2 chr4:17524666 5'GT 17524666 Upstream 94bp
chr1 160324052 160324052 1 + G T SARC 160324049 + 160324029 160324069 41 GAAACATCTCTGGCGTTGTTCTGGCTGACCACTCTGGTGCC GAAACATCTCTGGCGTTGTTCTGTCTGACCACTCTGGTGCC < 41bp 0.704537597025716 0.299008610846498 0.8760053 0.47791138 prediction 0.409075194051431 Functional Loss - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160324049 chr1:160324052 nonsynonymous SNV 0.945 0 24 hm5C_associated_SNPs_94692 0 0 1 0 1 NCSTN chr1:160324080 5'GT 160324080 Upstream 29bp
chr20 31656654 31656654 1 + C T GBM 31656651 + 31656631 31656671 41 ACCAGCAACTCCTACTGTTCCTGCGGGTGAGGGAAGCTCCC ACCAGCAACTCCTACTGTTCCTGTGGGTGAGGGAAGCTCCC < 41bp 0.764317059505968 0.559783672383957 0.19383386 0.06376055 prediction 0.409066774244022 Functional Loss - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31656651 chr20:31656654 nonsynonymous SNV 0.432 4 24 hm5C_associated_SNPs_94695 0 0 0 0 1 BPIFB3 chr20:31656609 3'AG 31656609 Downstream 46bp
chr15 25332698 25332698 1 + G A CESC 25332695 + 25332675 25332715 41 TTGGAGATGGCAGGAAGCCCCTGGAAACACATGGTGTGGAC TTGGAGATGGCAGGAAGCCCCTGAAAACACATGGTGTGGAC < 41bp 0.79257339655278 0.588042671993551 0.5479885 0.09679636 prediction 0.409061449118458 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25332695 chr15:25332698 . . 0 24 hm5C_associated_SNPs_94697 0 0 1 0 2 SNHG14 chr15:25332614 3'AG 25332614 Downstream 85bp
chr15 25332698 25332698 1 + G A CESC 25332695 + 25332675 25332715 41 TTGGAGATGGCAGGAAGCCCCTGGAAACACATGGTGTGGAC TTGGAGATGGCAGGAAGCCCCTGAAAACACATGGTGTGGAC < 41bp 0.79257339655278 0.588042671993551 0.5479885 0.09679636 prediction 0.409061449118458 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25332695 chr15:25332698 . . 0 24 hm5C_associated_SNPs_94697 0 0 1 0 2 SNHG14 chr15:25332746 5'GT 25332746 Upstream 49bp
chr11 551688 551688 1 + C T SARC 551686 + 551666 551706 41 CCCCCATCCGGAGACTTGACCCCGAGCTGTCCCTGCCTGAG CCCCCATCCGGAGACTTGACCCTGAGCTGTCCCTGCCTGAG < 41bp 0.704529607179242 0.443560233414951 0.18851772 0.0722267 prediction 0.409059214358485 Functional Loss - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:551686 chr11:551688 synonymous SNV . 0 23 hm5C_associated_SNPs_94698 0 0 0 0 1 LRRC56 chr11:551651 3'AG 551651 Downstream 38bp
chr1 161199501 161199501 1 - C T SKCM 161199504 - 161199484 161199524 41 TGCTGGGACCAAAGATTGGGCCGGGTTCAAAGGGAGCCCAG TGCTGGGACCAAAGATTGGGCCGAGTTCAAAGGGAGCCCAG < 41bp 0.713012082411571 0.508486376451897 0.85560983 0.20340535 prediction 0.409051411919349 Functional Loss - NR1I3 ENSG00000143257 CDS Human protein_coding chr1:161199504 chr1:161199501 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_94700 0 0 0 2 1 NR1I3 chr1:161199562 3'AG 161199562 Downstream 62bp
chr3 9965627 9965627 1 + G T BLCA 9965625 + 9965605 9965645 41 GCATCTGGTTCTGAATGTCTCTGAGGAGCAGCACTTCGGCC GCATCTGGTTCTGAATGTCTCTTAGGAGCAGCACTTCGGCC < 41bp 0.704525498966517 0.366330405409376 0.26326472 0.058918744 prediction 0.409050997933033 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9965625 chr3:9965627 stopgain 0.842 0 23 hm5C_associated_SNPs_94701 0 0 1 12 2 IL17RC chr3:9965565 3'AG 9965565 Downstream 63bp
chr3 9965627 9965627 1 + G T BLCA 9965625 + 9965605 9965645 41 GCATCTGGTTCTGAATGTCTCTGAGGAGCAGCACTTCGGCC GCATCTGGTTCTGAATGTCTCTTAGGAGCAGCACTTCGGCC < 41bp 0.704525498966517 0.366330405409376 0.26326472 0.058918744 prediction 0.409050997933033 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9965625 chr3:9965627 stopgain 0.842 0 23 hm5C_associated_SNPs_94701 0 0 1 12 2 IL17RC chr3:9965704 5'GT 9965704 Upstream 78bp
chr3 12861600 12861600 1 + G A rs181307051 12861597 + 12861577 12861617 41 TCCTGCAGGTCGGCCACACACCCGGAGCACCGTCATCACAG TCCTGCAGGTCGGCCACACACCCAGAGCACCGTCATCACAG < 41bp 0.828698604002811 0.624174047080716 0.068321586 0.02660352 prediction 0.40904911384419 Functional Loss - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12861597 chr3:12861600 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_94703 0 0 0 0 2 CAND2 chr3:12861585 3'AG 12861585 Downstream 16bp
chr3 12861600 12861600 1 + G A rs181307051 12861597 + 12861577 12861617 41 TCCTGCAGGTCGGCCACACACCCGGAGCACCGTCATCACAG TCCTGCAGGTCGGCCACACACCCAGAGCACCGTCATCACAG < 41bp 0.828698604002811 0.624174047080716 0.068321586 0.02660352 prediction 0.40904911384419 Functional Loss - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12861597 chr3:12861600 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_94703 0 0 0 0 2 CAND2 chr3:12861680 5'GT 12861680 Upstream 81bp
chr2 3730547 3730547 1 + T C UCEC 3730546 + 3730526 3730566 41 TGCTAGCTAAAATCCGACGACTGGAGTTACTTGGTTCCCAT TGCTAGCTAAAATCCGACGACCGGAGTTACTTGGTTCCCAT < 41bp 0.704524194392804 0.484915451842315 0.5592049 0.8888447 prediction 0.409048388785607 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3730546 chr2:3730547 nonsynonymous SNV 0.041 4 22 hm5C_associated_SNPs_94704 0 0 0 0 1 ALLC chr2:3730532 3'AG 3730532 Downstream 16bp
chr1 207244550 207244550 1 + A C UCEC 207244546 + 207244526 207244566 41 TTTTCAGATGAGCTACCATACTTGAGATGCCCTCTCCATAC TTTTCAGATGAGCTACCATACTTGCGATGCCCTCTCCATAC < 41bp 0.704524072510302 0.289997780348059 0.26180375 0.21992663 prediction 0.409048145020604 Functional Loss - PFKFB2 ENSG00000123836 CDS Human protein_coding chr1:207244546 chr1:207244550 synonymous SNV . 0 25 hm5C_associated_SNPs_94705 0 0 1 0 2 PFKFB2 chr1:207244533 3'AG 207244533 Downstream 18bp
chr1 207244550 207244550 1 + A C UCEC 207244546 + 207244526 207244566 41 TTTTCAGATGAGCTACCATACTTGAGATGCCCTCTCCATAC TTTTCAGATGAGCTACCATACTTGCGATGCCCTCTCCATAC < 41bp 0.704524072510302 0.289997780348059 0.26180375 0.21992663 prediction 0.409048145020604 Functional Loss - PFKFB2 ENSG00000123836 CDS Human protein_coding chr1:207244546 chr1:207244550 synonymous SNV . 0 25 hm5C_associated_SNPs_94705 0 0 1 0 2 PFKFB2 chr1:207244595 5'GT 207244595 Upstream 46bp
chr9 140878700 140878700 1 + G A COAD 140878697 + 140878677 140878717 41 CTGCTGAGGATCTTCAAAGTCACGAAGTACGTCCCCTGCGC CTGCTGAGGATCTTCAAAGTCACAAAGTACGTCCCCTGCGC < 41bp 0.803919608802254 0.599399296662684 0.69616336 0.28400856 prediction 0.40904062427914 Functional Loss - CACNA1B ENSG00000148408 CDS Human protein_coding chr9:140878697 chr9:140878700 synonymous SNV . 0 24 hm5C_associated_SNPs_94708 0 0 0 0 1 CACNA1B chr9:140878702 5'GT 140878702 Upstream 3bp
chr1 7870009 7870009 1 + G T UCEC 7870005 + 7869985 7870025 41 GAGCCTGGGGAGCAGCGGGTCGCAGGAGCAGCTTGTCAGCA GAGCCTGGGGAGCAGCGGGTCGCATGAGCAGCTTGTCAGCA < 41bp 0.710351576945903 0.505835758646648 0.4435967 0.4186087 prediction 0.40903163659851 Functional Loss - PER3 ENSG00000049246 CDS Human protein_coding chr1:7870005 chr1:7870009 nonsynonymous SNV 0.760 1 25 hm5C_associated_SNPs_94711 0 0 0 0 2 PER3 chr1:7869953 3'AG 7869953 Downstream 57bp
chr1 7870009 7870009 1 + G T UCEC 7870005 + 7869985 7870025 41 GAGCCTGGGGAGCAGCGGGTCGCAGGAGCAGCTTGTCAGCA GAGCCTGGGGAGCAGCGGGTCGCATGAGCAGCTTGTCAGCA < 41bp 0.710351576945903 0.505835758646648 0.4435967 0.4186087 prediction 0.40903163659851 Functional Loss - PER3 ENSG00000049246 CDS Human protein_coding chr1:7870005 chr1:7870009 nonsynonymous SNV 0.760 1 25 hm5C_associated_SNPs_94711 0 0 0 0 2 PER3 chr1:7870081 5'GT 7870081 Upstream 73bp
chr22 39380206 39380206 1 + C T SKCM 39380204 + 39380184 39380224 41 TAAAGAGGGGCCGCTCAAATCTCCTTTGGGACACAGGGGTC TAAAGAGGGGCCGCTCAAATCTTCTTTGGGACACAGGGGTC < 41bp 0.704515316333779 0.423326001893873 0.3736515 0.27664515 prediction 0.409030632667558 Functional Loss - APOBEC3B ENSG00000179750 CDS Human protein_coding chr22:39380204 chr22:39380206 synonymous SNV . 0 23 hm5C_associated_SNPs_94715 0 0 0 0 1 APOBEC3B chr22:39380236 5'GT 39380236 Upstream 31bp
chrX 48337472 48337472 1 + C T UCEC 48337469 + 48337449 48337489 41 CCAGCACTTTAAGGGCTGCCCTGCGGACCTAGTGGTGTGTG CCAGCACTTTAAGGGCTGCCCTGTGGACCTAGTGGTGTGTG < 41bp 0.765816530175144 0.561301688603032 0.36059815 0.11896235 prediction 0.409029683144223 Functional Loss - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48337469 chrX:48337472 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_94716 0 0 1 0 2 FTSJ1 chrX:48337426 3'AG 48337426 Downstream 47bp
chrX 48337472 48337472 1 + C T UCEC 48337469 + 48337449 48337489 41 CCAGCACTTTAAGGGCTGCCCTGCGGACCTAGTGGTGTGTG CCAGCACTTTAAGGGCTGCCCTGTGGACCTAGTGGTGTGTG < 41bp 0.765816530175144 0.561301688603032 0.36059815 0.11896235 prediction 0.409029683144223 Functional Loss - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48337469 chrX:48337472 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_94716 0 0 1 0 2 FTSJ1 chrX:48337504 5'GT 48337504 Upstream 33bp
chr15 85447424 85447424 1 + C T rs536548509 85447421 + 85447401 85447441 41 CTGGTGTCCTTCGCAGGAATCTGCGTGTTCGTCGCTCTCCT CTGGTGTCCTTCGCAGGAATCTGTGTGTTCGTCGCTCTCCT < 41bp 0.753987243895033 0.549476070906298 0.6439484 0.400281 prediction 0.409022345977472 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85447421 chr15:85447424 synonymous SNV . 0 24 hm5C_associated_SNPs_94719 0 0 0 0 2 SLC28A1 chr15:85447328 3'AG 85447328 Downstream 97bp
chr15 85447424 85447424 1 + C T rs536548509 85447421 + 85447401 85447441 41 CTGGTGTCCTTCGCAGGAATCTGCGTGTTCGTCGCTCTCCT CTGGTGTCCTTCGCAGGAATCTGTGTGTTCGTCGCTCTCCT < 41bp 0.753987243895033 0.549476070906298 0.6439484 0.400281 prediction 0.409022345977472 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85447421 chr15:85447424 synonymous SNV . 0 24 hm5C_associated_SNPs_94719 0 0 0 0 2 SLC28A1 chr15:85447469 5'GT 85447469 Upstream 46bp
chr2 109336129 109336129 1 + C T BLCA 109336127 + 109336107 109336147 41 GCAGGGCTCCACCCCGTCGCCTCGACAGGTGAGTGGGTCTC GCAGGGCTCCACCCCGTCGCCTTGACAGGTGAGTGGGTCTC < 41bp 0.812129998107154 0.607619947828036 0.49761647 0.10714862 prediction 0.409020100558237 Functional Loss - RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109336127 chr2:109336129 stopgain 0.775 0 23 hm5C_associated_SNPs_94721 0 0 1 0 1 RANBP2 chr2:109336134 5'GT 109336134 Upstream 6bp
chr8 24170916 24170916 1 + G T SARC 24170914 + 24170894 24170934 41 TTTTCAGGGGCTACTTCAGTCAGGGGGATCAAAGATACTTT TTTTCAGGGGCTACTTCAGTCATGGGGATCAAAGATACTTT < 41bp 0.704508688535788 0.358725684519763 0.8977552 0.70142186 prediction 0.409017377071577 Functional Loss - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24170914 chr8:24170916 nonsynonymous SNV 0.932 0 23 hm5C_associated_SNPs_94723 0 0 0 0 1 ADAM28 chr8:24170901 3'AG 24170901 Downstream 16bp
chr8 24170917 24170917 1 + G A SKCM 24170914 + 24170894 24170934 41 TTTTCAGGGGCTACTTCAGTCAGGGGGATCAAAGATACTTT TTTTCAGGGGCTACTTCAGTCAGAGGGATCAAAGATACTTT < 41bp 0.704508688535788 0.480783907056288 0.8977552 0.78583676 prediction 0.409017377071577 Functional Loss - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24170914 chr8:24170917 nonsynonymous SNV 0.926 1 24 hm5C_associated_SNPs_94724 0 0 0 0 1 ADAM28 chr8:24170901 3'AG 24170901 Downstream 17bp
chr8 39847257 39847257 1 + G A UCEC 39847254 + 39847234 39847274 41 CCCTAGGCTCTTGTTCAGGCCACGAATGCTATCTTGCAGCC CCCTAGGCTCTTGTTCAGGCCACAAATGCTATCTTGCAGCC < 41bp 0.818154358415611 0.613647493877686 0.3891127 0.34725 prediction 0.409013729075849 Functional Loss - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39847254 chr8:39847257 synonymous SNV . 0 24 hm5C_associated_SNPs_94725 0 0 0 0 1 IDO2 chr8:39847240 3'AG 39847240 Downstream 18bp
chr5 148687114 148687114 1 + C T GBM 148687111 + 148687091 148687131 41 GCAGGATATGTGCCTTCCTGCTGCGGAAAAAGCGTTTCGGG GCAGGATATGTGCCTTCCTGCTGTGGAAAAAGCGTTTCGGG < 41bp 0.76083062161206 0.556325962216455 0.30536723 0.32823056 prediction 0.40900931879121 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148687111 chr5:148687114 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_94727 0 0 0 0 1 AFAP1L1 chr5:148687176 5'GT 148687176 Upstream 63bp
chr11 111857640 111857640 1 + G A UCEC 111857637 + 111857617 111857657 41 ATCAGAGTATGGAGGAGAATCAGGACTTAAAGGTATGTCAA ATCAGAGTATGGAGGAGAATCAGAACTTAAAGGTATGTCAA < 41bp 0.796375716112073 0.591873085047739 0.90508485 0.48928434 prediction 0.409005262128668 Functional Loss - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111857637 chr11:111857640 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_94728 0 0 1 0 2 DIXDC1 chr11:111857595 3'AG 111857595 Downstream 46bp
chr11 111857640 111857640 1 + G A UCEC 111857637 + 111857617 111857657 41 ATCAGAGTATGGAGGAGAATCAGGACTTAAAGGTATGTCAA ATCAGAGTATGGAGGAGAATCAGAACTTAAAGGTATGTCAA < 41bp 0.796375716112073 0.591873085047739 0.90508485 0.48928434 prediction 0.409005262128668 Functional Loss - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111857637 chr11:111857640 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_94728 0 0 1 0 2 DIXDC1 chr11:111857648 5'GT 111857648 Upstream 9bp
chr14 99183499 99183499 1 + C T LUSC 99183496 + 99183476 99183516 41 CCAGAGACATGAAGAAACTTCTCCAGGGTCATGTAATCACC CCAGAGACATGAAGAAACTTCTCTAGGGTCATGTAATCACC < 41bp 0.776710279424846 0.572209383734549 0.93473095 0.89619315 prediction 0.409001791380594 Functional Loss - C14orf177 ENSG00000176605 CDS Human protein_coding chr14:99183496 chr14:99183499 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_94730 0 0 0 0 1 C14orf177 chr14:99183433 3'AG 99183433 Downstream 67bp
chrX 48340054 48340054 1 + C T STAD 48340052 + 48340032 48340072 41 TCTGTCAGGGCTATGACCCTCCCGAGGGCTTCATCCCGGAC TCTGTCAGGGCTATGACCCTCCTGAGGGCTTCATCCCGGAC < 41bp 0.873855249694074 0.669355074611289 0.35923177 0.40867585 prediction 0.409000350165569 Functional Loss - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48340052 chrX:48340054 synonymous SNV . 0 23 hm5C_associated_SNPs_94731 0 0 1 0 2 FTSJ1 chrX:48340020 3'AG 48340020 Downstream 35bp
chrX 48340054 48340054 1 + C T STAD 48340052 + 48340032 48340072 41 TCTGTCAGGGCTATGACCCTCCCGAGGGCTTCATCCCGGAC TCTGTCAGGGCTATGACCCTCCTGAGGGCTTCATCCCGGAC < 41bp 0.873855249694074 0.669355074611289 0.35923177 0.40867585 prediction 0.409000350165569 Functional Loss - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48340052 chrX:48340054 synonymous SNV . 0 23 hm5C_associated_SNPs_94731 0 0 1 0 2 FTSJ1 chrX:48340103 5'GT 48340103 Upstream 50bp
chr9 136509385 136509385 1 + G T LUAD 136509383 + 136509363 136509403 41 CGGCCTTGCCTTCGGGGGTCCAGGGTCCTCCAGATATCTCC CGGCCTTGCCTTCGGGGGTCCATGGTCCTCCAGATATCTCC < 41bp 0.704497484739307 0.325128931621195 0.9284805 0.38119668 prediction 0.408994969478615 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136509383 chr9:136509385 nonsynonymous SNV 0.013 4 23 hm5C_associated_SNPs_94733 0 0 0 0 2 DBH chr9:136509340 3'AG 136509340 Downstream 46bp
chr9 136509385 136509385 1 + G T LUAD 136509383 + 136509363 136509403 41 CGGCCTTGCCTTCGGGGGTCCAGGGTCCTCCAGATATCTCC CGGCCTTGCCTTCGGGGGTCCATGGTCCTCCAGATATCTCC < 41bp 0.704497484739307 0.325128931621195 0.9284805 0.38119668 prediction 0.408994969478615 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136509383 chr9:136509385 nonsynonymous SNV 0.013 4 23 hm5C_associated_SNPs_94733 0 0 0 0 2 DBH chr9:136509442 5'GT 136509442 Upstream 58bp
chr9 40716223 40716223 1 + G T LUAD 40716221 + 40716201 40716241 41 TTCAGAGGCTGTCGTTACTGCTGCACTTGGCTGTTTTTCTT TTCAGAGGCTGTCGTTACTGCTTCACTTGGCTGTTTTTCTT < 41bp 0.70448803437289 0.375436161273348 0.20451221 0.1270409 prediction 0.408976068745779 Functional Loss - FAM74A3 ENSG00000204844 ncRNA_exonic Human other chr9:40716221 chr9:40716223 . . 0 23 hm5C_associated_SNPs_94736 0 0 0 0 1 FAM74A3 chr9:40716311 5'GT 40716311 Upstream 89bp
chr4 187086544 187086544 1 + C T STAD 187086542 + 187086522 187086562 41 TTCCCCACTGGTTCAAACGTCACGGAGCAGGTTCCCCCCGC TTCCCCACTGGTTCAAACGTCATGGAGCAGGTTCCCCCCGC < 41bp 0.855874695805327 0.651387520240868 0.8291426 0.62141556 prediction 0.408974351128917 Functional Loss - FAM149A ENSG00000109794 CDS Human protein_coding chr4:187086542 chr4:187086544 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_94737 0 0 0 0 2 FAM149A chr4:187086498 3'AG 187086498 Downstream 47bp
chr4 187086544 187086544 1 + C T STAD 187086542 + 187086522 187086562 41 TTCCCCACTGGTTCAAACGTCACGGAGCAGGTTCCCCCCGC TTCCCCACTGGTTCAAACGTCATGGAGCAGGTTCCCCCCGC < 41bp 0.855874695805327 0.651387520240868 0.8291426 0.62141556 prediction 0.408974351128917 Functional Loss - FAM149A ENSG00000109794 CDS Human protein_coding chr4:187086542 chr4:187086544 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_94737 0 0 0 0 2 FAM149A chr4:187086618 5'GT 187086618 Upstream 75bp
chr15 76630210 76630210 1 + G A UCEC 76630207 + 76630187 76630227 41 TCGCCCGACCTCGAGTGGCACGCGGCCTGCCTCAAGTGTGC TCGCCCGACCTCGAGTGGCACGCAGCCTGCCTCAAGTGTGC < 41bp 0.704485804564828 0.453854617336024 0.4143952 0.10179353 prediction 0.408971609129656 Functional Loss - ISL2 ENSG00000159556 CDS Human protein_coding chr15:76630207 chr15:76630210 synonymous SNV . 0 24 hm5C_associated_SNPs_94739 0 0 1 0 2 ISL2 chr15:76630119 3'AG 76630119 Downstream 92bp
chr15 76630210 76630210 1 + G A UCEC 76630207 + 76630187 76630227 41 TCGCCCGACCTCGAGTGGCACGCGGCCTGCCTCAAGTGTGC TCGCCCGACCTCGAGTGGCACGCAGCCTGCCTCAAGTGTGC < 41bp 0.704485804564828 0.453854617336024 0.4143952 0.10179353 prediction 0.408971609129656 Functional Loss - ISL2 ENSG00000159556 CDS Human protein_coding chr15:76630207 chr15:76630210 synonymous SNV . 0 24 hm5C_associated_SNPs_94739 0 0 1 0 2 ISL2 chr15:76630308 5'GT 76630308 Upstream 99bp
chr4 52943137 52943137 1 + G A BRCA 52943134 + 52943114 52943154 41 TATTCCCAGGCCCGCCTGGACGCGCAGTGCCTGCTGCGGCG TATTCCCAGGCCCGCCTGGACGCACAGTGCCTGCTGCGGCG < 41bp 0.834637349993177 0.630152723264646 0.54185313 0.24879599 prediction 0.408969253457062 Functional Loss - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52943134 chr4:52943137 synonymous SNV . 0 24 hm5C_associated_SNPs_94740 0 0 1 0 1 SPATA18 chr4:52943206 5'GT 52943206 Upstream 70bp
chr19 49631724 49631724 1 + G A LUSC 49631721 + 49631701 49631741 41 GAAGGCGGAACGGAACAACACGCGGGTGAGGGGTGTTGAGG GAAGGCGGAACGGAACAACACGCAGGTGAGGGGTGTTGAGG < 41bp 0.820716840534192 0.616239656139728 0.8193995 0.29334563 prediction 0.408954368788927 Functional Loss - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49631721 chr19:49631724 nonsynonymous SNV 0.874 3 24 hm5C_associated_SNPs_94746 0 0 0 1 1 PPFIA3 chr19:49631725 5'GT 49631725 Upstream 2bp
chr6 46803080 46803080 1 + C T UCEC 46803077 + 46803057 46803097 41 CAAGGCCAGGAGCAGCAGGTCTCCGAAGAAGGTTCGGGAAA CAAGGCCAGGAGCAGCAGGTCTCTGAAGAAGGTTCGGGAAA < 41bp 0.704477093075772 0.470678785438881 0.91146994 0.21993542 prediction 0.408954186151545 Functional Loss - MEP1A ENSG00000112818 CDS Human protein_coding chr6:46803077 chr6:46803080 synonymous SNV . 0 24 hm5C_associated_SNPs_94747 0 0 0 0 1 MEP1A chr6:46802986 3'AG 46802986 Downstream 95bp
chr5 178373452 178373452 1 + G A rs74894989 178373449 + 178373429 178373469 41 CAGAGGGCCCTGTACAGGGACGTGATGCTGGAGAACTACAG CAGAGGGCCCTGTACAGGGACGTAATGCTGGAGAACTACAG < 41bp 0.704476047321177 0.460658050266348 0.17872337 0.17701408 prediction 0.408952094642354 Functional Loss - ZNF454 ENSG00000178187 CDS Human protein_coding chr5:178373449 chr5:178373452 synonymous SNV . 0 24 hm5C_associated_SNPs_94748 0 0 1 0 2 ZNF454 chr5:178373360 3'AG 178373360 Downstream 93bp
chr5 178373452 178373452 1 + G A rs74894989 178373449 + 178373429 178373469 41 CAGAGGGCCCTGTACAGGGACGTGATGCTGGAGAACTACAG CAGAGGGCCCTGTACAGGGACGTAATGCTGGAGAACTACAG < 41bp 0.704476047321177 0.460658050266348 0.17872337 0.17701408 prediction 0.408952094642354 Functional Loss - ZNF454 ENSG00000178187 CDS Human protein_coding chr5:178373449 chr5:178373452 synonymous SNV . 0 24 hm5C_associated_SNPs_94748 0 0 1 0 2 ZNF454 chr5:178373486 5'GT 178373486 Upstream 35bp
chr14 100182205 100182205 1 + G T LUAD 100182201 + 100182181 100182221 41 TCCGGGAGAGCATTCGCTTCCTGCGCCAGGTGGGCAGGGAC TCCGGGAGAGCATTCGCTTCCTGCTCCAGGTGGGCAGGGAC < 41bp 0.738058578270988 0.533586136469847 0.12184888 0.13384274 prediction 0.408944883602282 Functional Loss - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100182201 chr14:100182205 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_94749 0 0 0 0 2 CYP46A1 chr14:100182147 3'AG 100182147 Downstream 59bp
chr14 100182205 100182205 1 + G T LUAD 100182201 + 100182181 100182221 41 TCCGGGAGAGCATTCGCTTCCTGCGCCAGGTGGGCAGGGAC TCCGGGAGAGCATTCGCTTCCTGCTCCAGGTGGGCAGGGAC < 41bp 0.738058578270988 0.533586136469847 0.12184888 0.13384274 prediction 0.408944883602282 Functional Loss - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100182201 chr14:100182205 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_94749 0 0 0 0 2 CYP46A1 chr14:100182297 5'GT 100182297 Upstream 93bp
chr22 50636382 50636382 1 + C T STAD 50636379 + 50636359 50636399 41 ACGTCTACCTAACCTACATGCTGCGCCAGGCCGCGCGGCGC ACGTCTACCTAACCTACATGCTGTGCCAGGCCGCGCGGCGC < 41bp 0.737025454729852 0.532554040118024 0.20544949 0.3442743 prediction 0.408942829223657 Functional Loss - TRABD ENSG00000170638 CDS Human protein_coding chr22:50636379 chr22:50636382 nonsynonymous SNV 0.790 3 24 hm5C_associated_SNPs_94750 0 0 1 0 1 TRABD chr22:50636424 5'GT 50636424 Upstream 43bp
chr10 26505801 26505801 1 + G T BLCA 26505797 + 26505777 26505817 41 GGAAGATGGCTCTGGGGATTCCGAGAATCCCGGCACAGGTA GGAAGATGGCTCTGGGGATTCCGATAATCCCGGCACAGGTA < 41bp 0.704469861127834 0.488517420223214 0.7959107 0.7550349 prediction 0.408939722255668 Functional Loss - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26505797 chr10:26505801 nonsynonymous SNV 0.989 0 25 hm5C_associated_SNPs_94752 0 0 0 0 1 GAD2 chr10:26505814 5'GT 26505814 Upstream 14bp
chr19 45130793 45130793 1 + C T COAD 45130790 + 45130770 45130810 41 TCCCTGTCAGGAGGCTCTGCCATCGGGCTCCTTGCGGCTGG TCCCTGTCAGGAGGCTCTGCCATTGGGCTCCTTGCGGCTGG < 41bp 0.704468195302403 0.498218045642279 0.40739918 0.31700057 prediction 0.408936390604806 Functional Loss - IGSF23 ENSG00000216588 CDS Human protein_coding chr19:45130790 chr19:45130793 synonymous SNV . 0 24 hm5C_associated_SNPs_94754 0 0 0 0 2 IGSF23 chr19:45130717 3'AG 45130717 Downstream 77bp
chr19 45130793 45130793 1 + C T COAD 45130790 + 45130770 45130810 41 TCCCTGTCAGGAGGCTCTGCCATCGGGCTCCTTGCGGCTGG TCCCTGTCAGGAGGCTCTGCCATTGGGCTCCTTGCGGCTGG < 41bp 0.704468195302403 0.498218045642279 0.40739918 0.31700057 prediction 0.408936390604806 Functional Loss - IGSF23 ENSG00000216588 CDS Human protein_coding chr19:45130790 chr19:45130793 synonymous SNV . 0 24 hm5C_associated_SNPs_94754 0 0 0 0 2 IGSF23 chr19:45130870 5'GT 45130870 Upstream 78bp
chr5 68513659 68513659 1 + G T UCEC 68513656 + 68513636 68513676 41 AACTGCCCCTTCTCGGGGGTCATGATGGGCAGCAAGATGGC AACTGCCCCTTCTCGGGGGTCATTATGGGCAGCAAGATGGC < 41bp 0.704463532035769 0.459295754836981 0.9057288 0.8985252 prediction 0.408927064071539 Functional Loss - MRPS36 ENSG00000134056 CDS Human protein_coding chr5:68513656 chr5:68513659 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_94758 0 0 1 0 1 MRPS36 chr5:68513698 5'GT 68513698 Upstream 40bp
chr7 134217814 134217814 1 + C T LGG 134217811 + 134217791 134217831 41 TAATGCCATCGGTGGAAAAGCAACGTTCTTGGATGCCTGGG TAATGCCATCGGTGGAAAAGCAATGTTCTTGGATGCCTGGG < 41bp 0.705254895797526 0.500793513071029 0.35255653 0.34738916 prediction 0.408922765452993 Functional Loss - AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134217811 chr7:134217814 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_94759 0 0 1 0 2 AKR1B10 chr7:134217756 3'AG 134217756 Downstream 59bp
chr7 134217814 134217814 1 + C T LGG 134217811 + 134217791 134217831 41 TAATGCCATCGGTGGAAAAGCAACGTTCTTGGATGCCTGGG TAATGCCATCGGTGGAAAAGCAATGTTCTTGGATGCCTGGG < 41bp 0.705254895797526 0.500793513071029 0.35255653 0.34738916 prediction 0.408922765452993 Functional Loss - AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134217811 chr7:134217814 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_94759 0 0 1 0 2 AKR1B10 chr7:134217833 5'GT 134217833 Upstream 20bp
chr19 55344194 55344194 1 + G A rs374945085 55344191 + 55344171 55344211 41 GCTGCTGAGCTGAGCTGGGGCGCGGCCGCCTGTCTGCACCG GCTGCTGAGCTGAGCTGGGGCGCAGCCGCCTGTCTGCACCG < 41bp 0.704453227216821 0.481935265762051 0.6872386 0.5289586 prediction 0.408906454433643 Functional Loss - KIR2DS4 ENSG00000221957 UTR5 Human polymorphic_pseudogene chr19:55344191 chr19:55344194 . . 0 24 hm5C_associated_SNPs_94764 0 0 0 0 1 KIR2DS4 chr19:55344253 5'GT 55344253 Upstream 60bp
chr12 111082836 111082836 1 + G A rs118096349 111082833 + 111082813 111082853 41 TGAAGAGCCTGCTGTGGGGCCAGGGCTTCCCAGATTACGTG TGAAGAGCCTGCTGTGGGGCCAGAGCTTCCCAGATTACGTG < 41bp 0.803371082324921 0.598923314060731 0.8506195 0.68139946 prediction 0.40889553652838 Functional Loss - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111082833 chr12:111082836 nonsynonymous SNV 0.682 0 24 hm5C_associated_SNPs_94766 0 0 0 0 2 TCTN1 chr12:111082772 3'AG 111082772 Downstream 65bp
chr12 111082836 111082836 1 + G A rs118096349 111082833 + 111082813 111082853 41 TGAAGAGCCTGCTGTGGGGCCAGGGCTTCCCAGATTACGTG TGAAGAGCCTGCTGTGGGGCCAGAGCTTCCCAGATTACGTG < 41bp 0.803371082324921 0.598923314060731 0.8506195 0.68139946 prediction 0.40889553652838 Functional Loss - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111082833 chr12:111082836 nonsynonymous SNV 0.682 0 24 hm5C_associated_SNPs_94766 0 0 0 0 2 TCTN1 chr12:111082934 5'GT 111082934 Upstream 99bp
chr12 58174124 58174124 1 + G A UCEC 58174121 + 58174101 58174141 41 CCAATGTGCCAGCTGGAGGCCAGGCCCAGGTGCGTGCCTTG CCAATGTGCCAGCTGGAGGCCAGACCCAGGTGCGTGCCTTG < 41bp 0.704440523400951 0.466423712943822 0.51569563 0.35868835 prediction 0.408881046801901 Functional Loss - EEF1AKMT3 ENSG00000123427 CDS Human protein_coding chr12:58174121 chr12:58174124 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_94769 0 0 0 0 1 EEF1AKMT3 chr12:58174038 3'AG 58174038 Downstream 87bp
chrX 129155121 129155121 1 + G A GBM 129155118 + 129155098 129155138 41 GGAAAACGAGCCGACAGCCACGAGGAAGGTAGGCCCCGCGG GGAAAACGAGCCGACAGCCACGAAGAAGGTAGGCCCCGCGG < 41bp 0.837335607861797 0.63289589096144 0.89602995 0.51059395 prediction 0.408879433800714 Functional Loss - BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129155118 chrX:129155121 synonymous SNV . 0 24 hm5C_associated_SNPs_94770 0 0 0 0 1 BCORL1 chrX:129155125 5'GT 129155125 Upstream 5bp
chr13 31495263 31495263 1 + G T PAAD 31495261 + 31495241 31495281 41 TTGGAGAAAGTTACCGGCTTCAGGTAAGCCTAGCCTGTCTG TTGGAGAAAGTTACCGGCTTCATGTAAGCCTAGCCTGTCTG < 41bp 0.704438886736772 0.345844942300346 0.7432606 0.21755576 prediction 0.408877773473544 Functional Loss - MEDAG ENSG00000102802 CDS Human protein_coding chr13:31495261 chr13:31495263 nonsynonymous SNV 0.988 2 23 hm5C_associated_SNPs_94771 0 0 0 0 1 MEDAG chr13:31495263 5'GT 31495263 Upstream 1bp
chr6 133777705 133777705 1 - G A SKCM 133777708 - 133777688 133777728 41 GTTCAAGGGCTCTGTTTTGACTGCAAGAAGAGACACTACGT GTTCAAGGGCTCTGTTTTGACTGTAAGAAGAGACACTACGT < 41bp 0.731254212245448 0.526815874636388 0.07525548 0.05811596 prediction 0.40887667521812 Functional Loss - EYA4 ENSG00000112319 CDS Human antisense chr6:133777708 chr6:133777705 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_94772 0 0 0 0 1 EYA4 chr6:133777672 5'GT 133777672 Upstream 34bp
chr15 90895564 90895564 1 + A C rs1869179 90895563 + 90895543 90895583 41 CGGTCGGGTTCTGGGAGGCACAGCCTCGGGGTTGCGGGCCG CGGTCGGGTTCTGGGAGGCACCGCCTCGGGGTTGCGGGCCG < 41bp 0.771708650033288 0.567270363916008 0.31406653 0.3874101 prediction 0.408876572234559 Functional Loss - ZNF774 ENSG00000196391 UTR5 Human protein_coding chr15:90895563 chr15:90895564 . . 0 22 hm5C_associated_SNPs_94773 0 0 1 0 1 ZNF774 chr15:90895643 5'GT 90895643 Upstream 80bp
chr16 3085357 3085357 1 + G A rs183014367 3085354 + 3085334 3085374 41 TGCAGCTGCAAGGCTAGGTCCTCGGGCTCCTCAGGCCCTGG TGCAGCTGCAAGGCTAGGTCCTCAGGCTCCTCAGGCCCTGG < 41bp 0.823072944449641 0.618636765549752 0.17911047 0.05851087 prediction 0.408872357799777 Functional Loss - BICDL2 ENSG00000162069 CDS Human protein_coding chr16:3085354 chr16:3085357 synonymous SNV . 0 24 hm5C_associated_SNPs_94774 0 0 0 0 1 BICDL2 chr16:3085339 3'AG 3085339 Downstream 19bp
chr5 176795229 176795229 1 + G A UCEC 176795226 + 176795206 176795246 41 CCCTCAACTCCTCCGCCAGCCTGGACCTTGGCTTCCTAGCC CCCTCAACTCCTCCGCCAGCCTGAACCTTGGCTTCCTAGCC < 41bp 0.827238318545749 0.622803647975603 0.68936837 0.32040766 prediction 0.408869341140292 Functional Loss - RGS14 ENSG00000169220 CDS Human protein_coding chr5:176795226 chr5:176795229 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_94776 0 0 0 0 2 RGS14 chr5:176795158 3'AG 176795158 Downstream 72bp
chr5 176795229 176795229 1 + G A UCEC 176795226 + 176795206 176795246 41 CCCTCAACTCCTCCGCCAGCCTGGACCTTGGCTTCCTAGCC CCCTCAACTCCTCCGCCAGCCTGAACCTTGGCTTCCTAGCC < 41bp 0.827238318545749 0.622803647975603 0.68936837 0.32040766 prediction 0.408869341140292 Functional Loss - RGS14 ENSG00000169220 CDS Human protein_coding chr5:176795226 chr5:176795229 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_94776 0 0 0 0 2 RGS14 chr5:176795267 5'GT 176795267 Upstream 39bp
chr14 77715169 77715169 1 + C T COAD 77715166 + 77715146 77715186 41 GCGTGGATGATGAACGTGTTCAGCGTGGTGATGGCGTACAG GCGTGGATGATGAACGTGTTCAGTGTGGTGATGGCGTACAG < 41bp 0.775520307982582 0.571087166376148 0.29885072 0.27482152 prediction 0.408866283212868 Functional Loss - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77715166 chr14:77715169 synonymous SNV . 0 24 hm5C_associated_SNPs_94778 0 0 0 0 2 TMEM63C chr14:77715110 3'AG 77715110 Downstream 60bp
chr14 77715169 77715169 1 + C T COAD 77715166 + 77715146 77715186 41 GCGTGGATGATGAACGTGTTCAGCGTGGTGATGGCGTACAG GCGTGGATGATGAACGTGTTCAGTGTGGTGATGGCGTACAG < 41bp 0.775520307982582 0.571087166376148 0.29885072 0.27482152 prediction 0.408866283212868 Functional Loss - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77715166 chr14:77715169 synonymous SNV . 0 24 hm5C_associated_SNPs_94778 0 0 0 0 2 TMEM63C chr14:77715215 5'GT 77715215 Upstream 47bp
chr12 6424800 6424800 1 + C T SKCM 6424798 + 6424778 6424818 41 AGCTGATCTACGTGAGAAAGCTCAAGATCATGACTGATGTG AGCTGATCTACGTGAGAAAGCTTAAGATCATGACTGATGTG < 41bp 0.704431903524204 0.420779316270816 0.12726387 0.03764075 prediction 0.408863807048409 Functional Loss - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6424798 chr12:6424800 synonymous SNV . 0 23 hm5C_associated_SNPs_94779 0 0 0 0 2 PLEKHG6 chr12:6424720 3'AG 6424720 Downstream 81bp
chr12 6424800 6424800 1 + C T SKCM 6424798 + 6424778 6424818 41 AGCTGATCTACGTGAGAAAGCTCAAGATCATGACTGATGTG AGCTGATCTACGTGAGAAAGCTTAAGATCATGACTGATGTG < 41bp 0.704431903524204 0.420779316270816 0.12726387 0.03764075 prediction 0.408863807048409 Functional Loss - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6424798 chr12:6424800 synonymous SNV . 0 23 hm5C_associated_SNPs_94779 0 0 0 0 2 PLEKHG6 chr12:6424815 5'GT 6424815 Upstream 16bp
chr12 6424799 6424799 1 + T C SKCM 6424798 + 6424778 6424818 41 AGCTGATCTACGTGAGAAAGCTCAAGATCATGACTGATGTG AGCTGATCTACGTGAGAAAGCCCAAGATCATGACTGATGTG < 41bp 0.704431903524204 0.440691647436363 0.12726387 0.076649874 prediction 0.408863807048409 Functional Loss - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6424798 chr12:6424799 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_94780 0 0 0 0 2 PLEKHG6 chr12:6424720 3'AG 6424720 Downstream 80bp
chr12 6424799 6424799 1 + T C SKCM 6424798 + 6424778 6424818 41 AGCTGATCTACGTGAGAAAGCTCAAGATCATGACTGATGTG AGCTGATCTACGTGAGAAAGCCCAAGATCATGACTGATGTG < 41bp 0.704431903524204 0.440691647436363 0.12726387 0.076649874 prediction 0.408863807048409 Functional Loss - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6424798 chr12:6424799 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_94780 0 0 0 0 2 PLEKHG6 chr12:6424815 5'GT 6424815 Upstream 17bp
chr19 14805889 14805889 1 + G A UCEC 14805886 + 14805866 14805906 41 GTGGGCATTGCTGGACAGCGCACGGAGGAGCCTGTGCAAAT GTGGGCATTGCTGGACAGCGCACAGAGGAGCCTGTGCAAAT < 41bp 0.825391017411729 0.620962434468389 0.78955364 0.2036283 prediction 0.40885716588668 Functional Loss - ZNF333 ENSG00000160961 CDS Human protein_coding chr19:14805886 chr19:14805889 nonsynonymous SNV 0.013 0 24 hm5C_associated_SNPs_94783 0 0 0 0 2 ZNF333 chr19:14805822 3'AG 14805822 Downstream 68bp
chr19 14805889 14805889 1 + G A UCEC 14805886 + 14805866 14805906 41 GTGGGCATTGCTGGACAGCGCACGGAGGAGCCTGTGCAAAT GTGGGCATTGCTGGACAGCGCACAGAGGAGCCTGTGCAAAT < 41bp 0.825391017411729 0.620962434468389 0.78955364 0.2036283 prediction 0.40885716588668 Functional Loss - ZNF333 ENSG00000160961 CDS Human protein_coding chr19:14805886 chr19:14805889 nonsynonymous SNV 0.013 0 24 hm5C_associated_SNPs_94783 0 0 0 0 2 ZNF333 chr19:14805945 5'GT 14805945 Upstream 57bp
chr11 63978759 63978759 1 + C T rs113348354 63978756 + 63978736 63978776 41 CTGCACTCCAGGCGTGGCACCTGCACTGTTCCGGGGGATGC CTGCACTCCAGGCGTGGCACCTGTACTGTTCCGGGGGATGC < 41bp 0.777423330773341 0.572997063497366 0.18343836 0.18496516 prediction 0.40885253455195 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63978756 chr11:63978759 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_94785 0 0 1 0 1 FERMT3 chr11:63978747 3'AG 63978747 Downstream 13bp
chr11 63276333 63276333 1 + C T SKCM 63276331 + 63276311 63276351 41 TTCAACCCTCGCTTCCATACCACCAAGCCCCATGTCATCTG TTCAACCCTCGCTTCCATACCATCAAGCCCCATGTCATCTG < 41bp 0.873337378634365 0.668911919139467 0.01559332 0.011351556 prediction 0.408850918989796 Functional Loss - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63276331 chr11:63276333 nonsynonymous SNV 0.984 1 23 hm5C_associated_SNPs_94786 0 0 0 0 3 LGALS12 chr11:63276247 3'AG 63276247 Downstream 87bp
chr11 63276333 63276333 1 + C T SKCM 63276331 + 63276311 63276351 41 TTCAACCCTCGCTTCCATACCACCAAGCCCCATGTCATCTG TTCAACCCTCGCTTCCATACCATCAAGCCCCATGTCATCTG < 41bp 0.873337378634365 0.668911919139467 0.01559332 0.011351556 prediction 0.408850918989796 Functional Loss - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63276331 chr11:63276333 nonsynonymous SNV 0.984 1 23 hm5C_associated_SNPs_94786 0 0 0 0 3 LGALS12 chr11:63276250 3'AG 63276250 Downstream 84bp
chr11 63276333 63276333 1 + C T SKCM 63276331 + 63276311 63276351 41 TTCAACCCTCGCTTCCATACCACCAAGCCCCATGTCATCTG TTCAACCCTCGCTTCCATACCATCAAGCCCCATGTCATCTG < 41bp 0.873337378634365 0.668911919139467 0.01559332 0.011351556 prediction 0.408850918989796 Functional Loss - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63276331 chr11:63276333 nonsynonymous SNV 0.984 1 23 hm5C_associated_SNPs_94786 0 0 0 0 3 LGALS12 chr11:63276257 3'AG 63276257 Downstream 77bp
chr10 60124635 60124635 1 + A T LUSC 60124631 + 60124611 60124651 41 GTCACCAGCTCTGACTGTATCAAAAGGTAATTTCATTGATC GTCACCAGCTCTGACTGTATCAAATGGTAATTTCATTGATC < 41bp 0.704425137707999 0.38756302435696 0.74224865 0.23012823 prediction 0.408850275415997 Functional Loss - UBE2D1 ENSG00000072401 CDS Human protein_coding chr10:60124631 chr10:60124635 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_94787 0 0 1 0 1 UBE2D1 chr10:60124636 5'GT 60124636 Upstream 2bp
chr15 91491396 91491396 1 + C T UCEC 91491393 + 91491373 91491413 41 TGGCTGTGCAATGACCAGATCGACGCAGGCACTCGGCGCTG TGGCTGTGCAATGACCAGATCGATGCAGGCACTCGGCGCTG < 41bp 0.729789345012959 0.525364479973889 0.3178749 0.1324574 prediction 0.408849730078141 Functional Loss - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91491393 chr15:91491396 synonymous SNV . 0 24 hm5C_associated_SNPs_94788 0 0 1 0 1 UNC45A chr15:91491372 3'AG 91491372 Downstream 25bp
chr18 61585256 61585256 1 + G T UCEC 61585254 + 61585234 61585274 41 TGATTTCCAAACACTTATCTCAGAAATCCTCAAGCCCAACG TGATTTCCAAACACTTATCTCATAAATCCTCAAGCCCAACG < 41bp 0.704423856510157 0.373526271658131 0.12849128 0.07198137 prediction 0.408847713020313 Functional Loss - SERPINB10 ENSG00000242550 CDS Human protein_coding chr18:61585254 chr18:61585256 stopgain 0.394 1 23 hm5C_associated_SNPs_94789 0 0 0 0 2 SERPINB10 chr18:61585199 3'AG 61585199 Downstream 58bp
chr18 61585256 61585256 1 + G T UCEC 61585254 + 61585234 61585274 41 TGATTTCCAAACACTTATCTCAGAAATCCTCAAGCCCAACG TGATTTCCAAACACTTATCTCATAAATCCTCAAGCCCAACG < 41bp 0.704423856510157 0.373526271658131 0.12849128 0.07198137 prediction 0.408847713020313 Functional Loss - SERPINB10 ENSG00000242550 CDS Human protein_coding chr18:61585254 chr18:61585256 stopgain 0.394 1 23 hm5C_associated_SNPs_94789 0 0 0 0 2 SERPINB10 chr18:61585336 5'GT 61585336 Upstream 81bp
chr3 46937283 46937283 1 + G A SKCM 46937280 + 46937260 46937300 41 GCGTCCACATCAGGGAAGCCCAGGAAAGATAAGGCATCTGG GCGTCCACATCAGGGAAGCCCAGAAAAGATAAGGCATCTGG < 41bp 0.809074021324386 0.604651418431026 0.4273386 0.25821197 prediction 0.408845205786721 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46937280 chr3:46937283 synonymous SNV . 0 24 hm5C_associated_SNPs_94790 0 0 0 0 2 PTH1R chr3:46937225 3'AG 46937225 Downstream 59bp
chr3 46937283 46937283 1 + G A SKCM 46937280 + 46937260 46937300 41 GCGTCCACATCAGGGAAGCCCAGGAAAGATAAGGCATCTGG GCGTCCACATCAGGGAAGCCCAGAAAAGATAAGGCATCTGG < 41bp 0.809074021324386 0.604651418431026 0.4273386 0.25821197 prediction 0.408845205786721 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46937280 chr3:46937283 synonymous SNV . 0 24 hm5C_associated_SNPs_94790 0 0 0 0 2 PTH1R chr3:46937359 5'GT 46937359 Upstream 77bp
chr20 35812762 35812762 1 + G A UCEC 35812759 + 35812739 35812779 41 GACTCAGCAGCCTTGGTGCTCAGGTGCCAGATGCAAAGGTA GACTCAGCAGCCTTGGTGCTCAGATGCCAGATGCAAAGGTA < 41bp 0.813536394734729 0.609115617723757 0.92210424 0.9117744 prediction 0.408841554021945 Functional Loss - RPN2 ENSG00000118705 CDS Human protein_coding chr20:35812759 chr20:35812762 nonsynonymous SNV 0.967 1 24 hm5C_associated_SNPs_94791 0 0 1 0 1 RPN2 chr20:35812776 5'GT 35812776 Upstream 15bp
chr2 7023620 7023620 1 + G A STAD 7023617 + 7023597 7023637 41 CGGCTGCCCAGCGTGAGCATCGTGAGCAATGGAAGCCTGAT CGGCTGCCCAGCGTGAGCATCGTAAGCAATGGAAGCCTGAT < 41bp 0.704419024680678 0.46049846160149 0.75368077 0.521729 prediction 0.408838049361356 Functional Loss - RSAD2 ENSG00000134321 CDS Human protein_coding chr2:7023617 chr2:7023620 synonymous SNV . 0 24 hm5C_associated_SNPs_94794 0 0 0 0 1 RSAD2 chr2:7023663 5'GT 7023663 Upstream 44bp
chr8 144462028 144462028 1 + G A SKCM 144462025 + 144462005 144462045 41 GCCGAGTACAGGCTAGTGCACCGGACCATGGCCCAGCCACC GCCGAGTACAGGCTAGTGCACCGAACCATGGCCCAGCCACC < 41bp 0.704416632659978 0.450830243851971 0.42053896 0.14121228 prediction 0.408833265319955 Functional Loss - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144462025 chr8:144462028 synonymous SNV . 0 24 hm5C_associated_SNPs_94797 0 0 1 0 1 RHPN1 chr8:144461999 3'AG 144461999 Downstream 30bp
chr17 9604512 9604512 1 + C T UCEC 9604509 + 9604489 9604529 41 AGCAGCAGCAGGCGCATCAGCAGCACAGCTGTACCTTGGAT AGCAGCAGCAGGCGCATCAGCAGTACAGCTGTACCTTGGAT < 41bp 0.714191720654008 0.509777601372769 0.3613857 0.17099378 prediction 0.408828238562478 Functional Loss - USP43 ENSG00000154914 CDS Human protein_coding chr17:9604509 chr17:9604512 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_94799 0 0 1 0 1 USP43 chr17:9604562 5'GT 9604562 Upstream 51bp
chr2 74685760 74685760 1 + G C CESC 74685756 + 74685736 74685776 41 CGGGCCAGCAGCGGGAACGGCAGCGAGGAGGCCTGGGGGGC CGGGCCAGCAGCGGGAACGGCAGCCAGGAGGCCTGGGGGGC < 41bp 0.704409592242897 0.405699880826527 0.91650987 0.7181008 prediction 0.408819184485794 Functional Loss - WBP1 ENSG00000239779 CDS Human protein_coding chr2:74685756 chr2:74685760 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_94803 0 0 1 0 1 WBP1 chr2:74685798 5'GT 74685798 Upstream 39bp
chr8 144718254 144718254 1 + G C rs1540558 144718250 + 144718230 144718270 41 CGGCTGATCTGTGGGGCCCGCGCCGGCGGGGTCCAGTCAGC CGGCTGATCTGTGGGGCCCGCGCCCGCGGGGTCCAGTCAGC < 41bp 0.856458111293314 0.652051473184434 0.7950837 0.11454424 prediction 0.40881327621776 Functional Loss - ZNF623 ENSG00000183309 UTR5 Human protein_coding chr8:144718250 chr8:144718254 . . 0 25 hm5C_associated_SNPs_94805 0 0 1 0 1 ZNF623 chr8:144718315 5'GT 144718315 Upstream 62bp
chrX 134655171 134655171 1 + C T GBM 134655169 + 134655149 134655189 41 CATCCCTTGCCCCGCAGCTGCGCGCCCGGGACCCGGCCAGC CATCCCTTGCCCCGCAGCTGCGTGCCCGGGACCCGGCCAGC < 41bp 0.70440657810657 0.43961639145852 0.21173325 0.19724691 prediction 0.408813156213139 Functional Loss - INTS6L ENSG00000165359 CDS Human protein_coding chrX:134655169 chrX:134655171 synonymous SNV . 0 23 hm5C_associated_SNPs_94806 0 0 1 0 2 INTS6L chrX:134655166 3'AG 134655166 Downstream 6bp
chrX 134655171 134655171 1 + C T GBM 134655169 + 134655149 134655189 41 CATCCCTTGCCCCGCAGCTGCGCGCCCGGGACCCGGCCAGC CATCCCTTGCCCCGCAGCTGCGTGCCCGGGACCCGGCCAGC < 41bp 0.70440657810657 0.43961639145852 0.21173325 0.19724691 prediction 0.408813156213139 Functional Loss - INTS6L ENSG00000165359 CDS Human protein_coding chrX:134655169 chrX:134655171 synonymous SNV . 0 23 hm5C_associated_SNPs_94806 0 0 1 0 2 INTS6L chrX:134655243 5'GT 134655243 Upstream 73bp
chr7 97911700 97911700 1 + C T rs112773459 97911698 + 97911678 97911718 41 ATCCCAGGGTCTACAACATCCACAGCCGGACCGTCACCCGC ATCCCAGGGTCTACAACATCCATAGCCGGACCGTCACCCGC < 41bp 0.704404802643668 0.43134577407755 0.1458573 0.20060208 prediction 0.408809605287337 Functional Loss - BRI3 ENSG00000164713 CDS Human protein_coding chr7:97911698 chr7:97911700 synonymous SNV . 0 23 hm5C_associated_SNPs_94808 0 0 1 0 2 BRI3 chr7:97911663 3'AG 97911663 Downstream 38bp
chr7 97911700 97911700 1 + C T rs112773459 97911698 + 97911678 97911718 41 ATCCCAGGGTCTACAACATCCACAGCCGGACCGTCACCCGC ATCCCAGGGTCTACAACATCCATAGCCGGACCGTCACCCGC < 41bp 0.704404802643668 0.43134577407755 0.1458573 0.20060208 prediction 0.408809605287337 Functional Loss - BRI3 ENSG00000164713 CDS Human protein_coding chr7:97911698 chr7:97911700 synonymous SNV . 0 23 hm5C_associated_SNPs_94808 0 0 1 0 2 BRI3 chr7:97911765 5'GT 97911765 Upstream 66bp
chr19 852349 852349 1 + C T UCEC 852347 + 852327 852367 41 CCATGACCCTCGGCCGCCGACTCGCGTGTCTTTTCCTCGCC CCATGACCCTCGGCCGCCGACTTGCGTGTCTTTTCCTCGCC < 41bp 0.704400881249175 0.478498327369067 0.14595449 0.14342406 prediction 0.408801762498349 Functional Loss - ELANE ENSG00000197561 CDS Human protein_coding chr19:852347 chr19:852349 synonymous SNV . 0 23 hm5C_associated_SNPs_94810 1 0 0 0 1 ELANE chr19:852395 5'GT 852395 Upstream 47bp
chr8 42183575 42183575 1 + T C LIHC 42183574 + 42183554 42183594 41 GGGCAGCTGATGTCTCAGCCCTCCACGGCCTCCAACAGCTT GGGCAGCTGATGTCTCAGCCCCCCACGGCCTCCAACAGCTT < 41bp 0.704398703873956 0.421128632013739 0.9032068 0.017089069 prediction 0.408797407747912 Functional Loss - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42183574 chr8:42183575 nonsynonymous SNV 0.104 0 22 hm5C_associated_SNPs_94812 0 0 1 0 2 IKBKB chr8:42183488 3'AG 42183488 Downstream 88bp
chr8 42183575 42183575 1 + T C LIHC 42183574 + 42183554 42183594 41 GGGCAGCTGATGTCTCAGCCCTCCACGGCCTCCAACAGCTT GGGCAGCTGATGTCTCAGCCCCCCACGGCCTCCAACAGCTT < 41bp 0.704398703873956 0.421128632013739 0.9032068 0.017089069 prediction 0.408797407747912 Functional Loss - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42183574 chr8:42183575 nonsynonymous SNV 0.104 0 22 hm5C_associated_SNPs_94812 0 0 1 0 2 IKBKB chr8:42183615 5'GT 42183615 Upstream 41bp
chr3 158980374 158980374 1 + G A SKCM 158980371 + 158980351 158980391 41 GGCGAGAGTACCTGCAGCGGCAGGAGCCCCTGGGGAAGAGG GGCGAGAGTACCTGCAGCGGCAGAAGCCCCTGGGGAAGAGG < 41bp 0.794656413258954 0.590260051238368 0.8226937 0.76780605 prediction 0.408792724041172 Functional Loss - IQCJ;IQCJ-SCHIP1 ENSG00000214216;ENSG00000250588 CDS Human other chr3:158980371 chr3:158980374 nonsynonymous SNV 0.913 1 24 hm5C_associated_SNPs_94814 0 0 0 0 2 IQCJ;IQCJ-SCHIP1 chr3:158980337 3'AG 158980337 Downstream 38bp
chr3 158980374 158980374 1 + G A SKCM 158980371 + 158980351 158980391 41 GGCGAGAGTACCTGCAGCGGCAGGAGCCCCTGGGGAAGAGG GGCGAGAGTACCTGCAGCGGCAGAAGCCCCTGGGGAAGAGG < 41bp 0.794656413258954 0.590260051238368 0.8226937 0.76780605 prediction 0.408792724041172 Functional Loss - IQCJ;IQCJ-SCHIP1 ENSG00000214216;ENSG00000250588 CDS Human other chr3:158980371 chr3:158980374 nonsynonymous SNV 0.913 1 24 hm5C_associated_SNPs_94814 0 0 0 0 2 IQCJ;IQCJ-SCHIP1 chr3:158980472 5'GT 158980472 Upstream 99bp
chr4 74354475 74354475 1 + C T UCEC 74354473 + 74354453 74354493 41 GTTGTGCAGTGCATCCGTGACACGGTGAATATTCTCTAAAA GTTGTGCAGTGCATCCGTGACATGGTGAATATTCTCTAAAA < 41bp 0.83028503468937 0.625892366382694 0.32353112 0.35675415 prediction 0.408785336613352 Functional Loss - AFM ENSG00000079557 CDS Human protein_coding chr4:74354473 chr4:74354475 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_94817 0 0 0 0 1 AFM chr4:74354476 5'GT 74354476 Upstream 2bp
chr20 34208851 34208851 1 + G A SKCM 34208848 + 34208828 34208868 41 AAGATCCAGATTCTAAGCAACTGGGGCCACCCCCGTTTCAC AAGATCCAGATTCTAAGCAACTGAGGCCACCCCCGTTTCAC < 41bp 0.805864338269125 0.601472048427053 0.4852637 0.35932317 prediction 0.408784579684143 Functional Loss - SPAG4 ENSG00000061656 CDS Human protein_coding chr20:34208848 chr20:34208851 stopgain 1.000 1 24 hm5C_associated_SNPs_94818 0 0 0 0 1 SPAG4 chr20:34208798 3'AG 34208798 Downstream 54bp
chr1 156883285 156883285 1 + C T COAD 156883282 + 156883262 156883302 41 TGCCTGCTGACTGGAAGCACCGCCGGGAGCCCCCTCCAGGG TGCCTGCTGACTGGAAGCACCGCTGGGAGCCCCCTCCAGGG < 41bp 0.753686238381921 0.549294366905793 0.17196003 0.09017712 prediction 0.408783742952255 Functional Loss - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156883282 chr1:156883285 nonsynonymous SNV 0.984 2 24 hm5C_associated_SNPs_94820 0 0 0 0 1 PEAR1 chr1:156883315 5'GT 156883315 Upstream 31bp
chr10 89472856 89472856 1 + C T UCEC 89472853 + 89472833 89472873 41 TCTCTCTGGTGCTGGAAAAACAACGATAAGTTTTGCCCTGG TCTCTCTGGTGCTGGAAAAACAATGATAAGTTTTGCCCTGG < 41bp 0.751638118534467 0.547246771619039 0.795651 0.9053271 prediction 0.408782693830855 Functional Loss - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89472853 chr10:89472856 nonsynonymous SNV 0.658 5 24 hm5C_associated_SNPs_94821 0 0 0 0 1 PAPSS2 chr10:89472832 3'AG 89472832 Downstream 25bp
chr5 143853269 143853269 1 + G A SKCM 143853266 + 143853246 143853286 41 TCACACTGCGATTGCTGCTGCAAGAATGGCAAAGGTGACAA TCACACTGCGATTGCTGCTGCAAAAATGGCAAAGGTGACAA < 41bp 0.704390537695445 0.476343555179899 0.44415858 0.24658266 prediction 0.40878107539089 Functional Loss - KCTD16 ENSG00000183775 CDS Human protein_coding chr5:143853266 chr5:143853269 synonymous SNV . 0 24 hm5C_associated_SNPs_94823 0 0 0 0 1 KCTD16 chr5:143853223 3'AG 143853223 Downstream 47bp
chr17 18916780 18916780 1 + G T SARC 18916778 + 18916758 18916798 41 CGGGCCTGCGGGGCCGAGGTCGGCTGCTCCAACATCGCCTA CGGGCCTGCGGGGCCGAGGTCGTCTGCTCCAACATCGCCTA < 41bp 0.704385132957166 0.334064265283827 0.90973175 0.5810576 prediction 0.408770265914332 Functional Loss - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18916778 chr17:18916780 nonsynonymous SNV 0.921 5 23 hm5C_associated_SNPs_94826 0 0 0 0 2 SLC5A10 chr17:18916723 3'AG 18916723 Downstream 58bp
chr17 18916780 18916780 1 + G T SARC 18916778 + 18916758 18916798 41 CGGGCCTGCGGGGCCGAGGTCGGCTGCTCCAACATCGCCTA CGGGCCTGCGGGGCCGAGGTCGTCTGCTCCAACATCGCCTA < 41bp 0.704385132957166 0.334064265283827 0.90973175 0.5810576 prediction 0.408770265914332 Functional Loss - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18916778 chr17:18916780 nonsynonymous SNV 0.921 5 23 hm5C_associated_SNPs_94826 0 0 0 0 2 SLC5A10 chr17:18916830 5'GT 18916830 Upstream 51bp
chr3 158531839 158531839 1 + G T LUSC 158531837 + 158531817 158531857 41 TCTGCTGGTCACACAACCCTCGGGATCACACTTATGATTGG TCTGCTGGTCACACAACCCTCGTGATCACACTTATGATTGG < 41bp 0.915767140548433 0.711383608162372 0.8609834 0.28444397 prediction 0.408767064772121 Functional Loss - MFSD1 ENSG00000118855 CDS Human protein_coding chr3:158531837 chr3:158531839 nonsynonymous SNV 0.968 4 23 hm5C_associated_SNPs_94828 0 0 1 0 2 MFSD1 chr3:158531754 3'AG 158531754 Downstream 86bp
chr3 158531839 158531839 1 + G T LUSC 158531837 + 158531817 158531857 41 TCTGCTGGTCACACAACCCTCGGGATCACACTTATGATTGG TCTGCTGGTCACACAACCCTCGTGATCACACTTATGATTGG < 41bp 0.915767140548433 0.711383608162372 0.8609834 0.28444397 prediction 0.408767064772121 Functional Loss - MFSD1 ENSG00000118855 CDS Human protein_coding chr3:158531837 chr3:158531839 nonsynonymous SNV 0.968 4 23 hm5C_associated_SNPs_94828 0 0 1 0 2 MFSD1 chr3:158531856 5'GT 158531856 Upstream 18bp
chr17 26817747 26817747 1 + G T SARC 26817743 + 26817723 26817763 41 ATCCTGGGCTTCATGCTGGTCACGGCCTTCCTGTCCATGTG ATCCTGGGCTTCATGCTGGTCACGTCCTTCCTGTCCATGTG < 41bp 0.761021904057143 0.556639190074331 0.19626233 0.082208276 prediction 0.408765427965623 Functional Loss - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26817743 chr17:26817747 nonsynonymous SNV 0.962 2 25 hm5C_associated_SNPs_94829 0 0 0 0 1 SLC13A2 chr17:26817719 3'AG 26817719 Downstream 29bp
chr9 133306835 133306835 1 + C T UCEC 133306833 + 133306813 133306853 41 AGCTACCAGTGCCTGTGCCCCGCCGGCTACCGTCTGCTCCC AGCTACCAGTGCCTGTGCCCCGTCGGCTACCGTCTGCTCCC < 41bp 0.822418830221306 0.618037600589393 0.30488908 0.1734691 prediction 0.408762459263826 Functional Loss - HMCN2 ENSG00000148357 CDS Human protein_coding chr9:133306833 chr9:133306835 nonsynonymous SNV 0.847 0 23 hm5C_associated_SNPs_94831 0 0 0 0 1 HMCN2 chr9:133306754 3'AG 133306754 Downstream 82bp
chr1 110170415 110170415 1 + C T CESC 110170412 + 110170392 110170432 41 CCAGAAAGTCATTCTGCTACCGCCGGCTGCAGTACCTGAGC CCAGAAAGTCATTCTGCTACCGCTGGCTGCAGTACCTGAGC < 41bp 0.7305819674682 0.526201512240764 0.6864137 0.29635224 prediction 0.408760910454872 Functional Loss - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110170412 chr1:110170415 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_94832 0 0 1 0 1 AMPD2 chr1:110170396 3'AG 110170396 Downstream 20bp
chr3 127323918 127323918 1 + C T UCEC 127323915 + 127323895 127323935 41 GCCCCCGGCTGGAGATCCACCACCGCTTCAAGAACTTCCTG GCCCCCGGCTGGAGATCCACCACTGCTTCAAGAACTTCCTG < 41bp 0.704378651927681 0.493390438797127 0.24256584 0.08641952 prediction 0.408757303855363 Functional Loss - MCM2 ENSG00000073111 CDS Human protein_coding chr3:127323915 chr3:127323918 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_94835 0 0 1 0 1 MCM2 chr3:127323999 5'GT 127323999 Upstream 82bp
chr22 46704834 46704834 1 + G T LIHC 46704830 + 46704810 46704850 41 AGGAAGAAGCATCCCTGGGGCTGCGGAGAAGGTAAATGCCA AGGAAGAAGCATCCCTGGGGCTGCTGAGAAGGTAAATGCCA < 41bp 0.726661780420526 0.52228342836994 0.21429935 0.24935183 prediction 0.408756704101172 Functional Loss - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46704830 chr22:46704834 synonymous SNV . 0 25 hm5C_associated_SNPs_94836 0 0 1 0 1 GTSE1 chr22:46704840 5'GT 46704840 Upstream 7bp
chr20 2542553 2542553 1 + G C OV 2542549 + 2542529 2542569 41 TCTGGTGGGGAGTCCCTGTCCGAGGAGGAACTGGCCCAGAT TCTGGTGGGGAGTCCCTGTCCGAGCAGGAACTGGCCCAGAT < 41bp 0.893299427044429 0.688923051728911 0.92910707 0.8138923 prediction 0.408752750631036 Functional Loss - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2542549 chr20:2542553 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_94839 0 0 0 0 1 TMC2 chr20:2542504 3'AG 2542504 Downstream 50bp
chr16 84438776 84438776 1 + C T UCEC 84438773 + 84438753 84438793 41 TGTCGGAGTTCTCGGTGACGCAGCGCCGGCTGGCCCATGGC TGTCGGAGTTCTCGGTGACGCAGTGCCGGCTGGCCCATGGC < 41bp 0.724922937079727 0.520547102404538 0.40988004 0.41163963 prediction 0.408751669350378 Functional Loss - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84438773 chr16:84438776 nonsynonymous SNV 0.913 5 24 hm5C_associated_SNPs_94840 0 0 0 0 2 ATP2C2 chr16:84438734 3'AG 84438734 Downstream 43bp
chr16 84438776 84438776 1 + C T UCEC 84438773 + 84438753 84438793 41 TGTCGGAGTTCTCGGTGACGCAGCGCCGGCTGGCCCATGGC TGTCGGAGTTCTCGGTGACGCAGTGCCGGCTGGCCCATGGC < 41bp 0.724922937079727 0.520547102404538 0.40988004 0.41163963 prediction 0.408751669350378 Functional Loss - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84438773 chr16:84438776 nonsynonymous SNV 0.913 5 24 hm5C_associated_SNPs_94840 0 0 0 0 2 ATP2C2 chr16:84438850 5'GT 84438850 Upstream 75bp
chr12 8866624 8866624 1 + G A SKCM 8866621 + 8866601 8866641 41 GATGAGGTGGTGCTGACAATCGAGCAAGGAAACCTGGGTAA GATGAGGTGGTGCTGACAATCGAACAAGGAAACCTGGGTAA < 41bp 0.812922987737571 0.608549088862415 0.8731307 0.55449975 prediction 0.408747797750311 Functional Loss - RIMKLB ENSG00000166532 CDS Human protein_coding chr12:8866621 chr12:8866624 synonymous SNV . 0 24 hm5C_associated_SNPs_94841 0 0 1 0 1 RIMKLB chr12:8866637 5'GT 8866637 Upstream 14bp
chr11 558912 558912 1 - C T rs138697295 558915 - 558895 558935 41 CCTGCAGCCCCCGAGACTCCCACGTGCCTGCCAGACACCAC CCTGCAGCCCCCGAGACTCCCACATGCCTGCCAGACACCAC < 41bp 0.812321209549091 0.607948730039001 0.58148474 0.16582671 prediction 0.408744959020179 Functional Loss - LMNTD2 ENSG00000185522 CDS Human protein_coding chr11:558915 chr11:558912 synonymous SNV . 0 24 hm5C_associated_SNPs_94842 0 0 0 0 2 LMNTD2 chr11:558856 5'GT 558856 Upstream 57bp
chr11 558912 558912 1 - C T rs138697295 558915 - 558895 558935 41 CCTGCAGCCCCCGAGACTCCCACGTGCCTGCCAGACACCAC CCTGCAGCCCCCGAGACTCCCACATGCCTGCCAGACACCAC < 41bp 0.812321209549091 0.607948730039001 0.58148474 0.16582671 prediction 0.408744959020179 Functional Loss - LMNTD2 ENSG00000185522 CDS Human protein_coding chr11:558915 chr11:558912 synonymous SNV . 0 24 hm5C_associated_SNPs_94842 0 0 0 0 2 LMNTD2 chr11:558979 3'AG 558979 Downstream 68bp
chr3 105264155 105264155 1 + G A LUSC 105264152 + 105264132 105264172 41 TCATGCACAATATCTGCTAGCAGGAATGCAACTGTGGTATG TCATGCACAATATCTGCTAGCAGAAATGCAACTGTGGTATG < 41bp 0.793395461309009 0.58902445789166 0.7397848 0.8428334 prediction 0.408742006834697 Functional Loss - ALCAM ENSG00000170017 CDS Human protein_coding chr3:105264152 chr3:105264155 synonymous SNV . 0 24 hm5C_associated_SNPs_94843 0 0 1 0 2 ALCAM chr3:105264067 3'AG 105264067 Downstream 89bp
chr3 105264155 105264155 1 + G A LUSC 105264152 + 105264132 105264172 41 TCATGCACAATATCTGCTAGCAGGAATGCAACTGTGGTATG TCATGCACAATATCTGCTAGCAGAAATGCAACTGTGGTATG < 41bp 0.793395461309009 0.58902445789166 0.7397848 0.8428334 prediction 0.408742006834697 Functional Loss - ALCAM ENSG00000170017 CDS Human protein_coding chr3:105264152 chr3:105264155 synonymous SNV . 0 24 hm5C_associated_SNPs_94843 0 0 1 0 2 ALCAM chr3:105264179 5'GT 105264179 Upstream 25bp
chr4 48486095 48486095 1 + C T SKCM 48486092 + 48486072 48486112 41 AGGTGGCCGCCGTGGCGGTGCTCCTGTGTGGCTGCTGTCCC AGGTGGCCGCCGTGGCGGTGCTCTTGTGTGGCTGCTGTCCC < 41bp 0.736351414472777 0.53198354768718 0.03815177 0.06556976 prediction 0.408735733571194 Functional Loss - SLC10A4 ENSG00000145248 CDS Human protein_coding chr4:48486092 chr4:48486095 synonymous SNV . 0 24 hm5C_associated_SNPs_94844 0 0 0 0 1 SLC10A4 chr4:48486168 5'GT 48486168 Upstream 74bp
chr2 219294156 219294156 1 + C T SKCM 219294153 + 219294133 219294173 41 CAAGCGCAGGGAGCTGAAGGCGGCCGTGCCCGACACGGTGG CAAGCGCAGGGAGCTGAAGGCGGTCGTGCCCGACACGGTGG < 41bp 0.740119335085171 0.535752470764881 0.89986193 0.87831223 prediction 0.408733728640581 Functional Loss - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219294153 chr2:219294156 nonsynonymous SNV 0.030 2 24 hm5C_associated_SNPs_94845 0 0 1 0 1 VIL1 chr2:219294210 5'GT 219294210 Upstream 55bp
chr8 1645363 1645363 1 + G A BRCA 1645360 + 1645340 1645380 41 TCGCAGGACCTGGCCGGCTACTGGGACATGCTGCAGCTCTC TCGCAGGACCTGGCCGGCTACTGAGACATGCTGCAGCTCTC < 41bp 0.805953878385662 0.601591569937369 0.8591492 0.42123032 prediction 0.408724616896586 Functional Loss - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1645360 chr8:1645363 stopgain 1.000 1 24 hm5C_associated_SNPs_94848 0 0 0 0 1 DLGAP2 chr8:1645313 3'AG 1645313 Downstream 51bp
chr17 37356561 37356561 1 + G A rs114881037 37356558 + 37356538 37356578 41 AGATAATGGGAGGAGCCGGGCCCGAGCGAGCTCTTTCCTTT AGATAATGGGAGGAGCCGGGCCCAAGCGAGCTCTTTCCTTT < 41bp 0.792957459601443 0.588596134343772 0.19598266 0.15736622 prediction 0.408722650515342 Functional Loss - RPL19 ENSG00000108298 UTR5 Human protein_coding chr17:37356558 chr17:37356561 . . 0 24 hm5C_associated_SNPs_94850 0 0 1 0 1 RPL19 chr17:37356602 5'GT 37356602 Upstream 42bp
chr10 7839114 7839114 1 + G T BRCA 7839112 + 7839092 7839132 41 AGCTGAGAGAGAGCTGAAACCAGCTCGAATATATGGATTGG AGCTGAGAGAGAGCTGAAACCATCTCGAATATATGGATTGG < 41bp 0.704359831739559 0.367674056559812 0.2980771 0.07207841 prediction 0.408719663479118 Functional Loss - ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7839112 chr10:7839114 nonsynonymous SNV 0.575 2 23 hm5C_associated_SNPs_94852 0 0 1 0 1 ATP5C1 chr10:7839141 5'GT 7839141 Upstream 28bp
chr22 39117783 39117783 1 + G T UCEC 39117779 + 39117759 39117799 41 GCTGGCATCGTGGGGATGACCAAAGAACACCTGGGCTTGGC GCTGGCATCGTGGGGATGACCAAATAACACCTGGGCTTGGC < 41bp 0.710019936152963 0.505661113304052 0.1448906 0.15633005 prediction 0.408717645697821 Functional Loss - GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39117779 chr22:39117783 stopgain 0.995 1 25 hm5C_associated_SNPs_94853 0 0 1 0 2 GTPBP1 chr22:39117747 3'AG 39117747 Downstream 37bp
chr22 39117783 39117783 1 + G T UCEC 39117779 + 39117759 39117799 41 GCTGGCATCGTGGGGATGACCAAAGAACACCTGGGCTTGGC GCTGGCATCGTGGGGATGACCAAATAACACCTGGGCTTGGC < 41bp 0.710019936152963 0.505661113304052 0.1448906 0.15633005 prediction 0.408717645697821 Functional Loss - GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39117779 chr22:39117783 stopgain 0.995 1 25 hm5C_associated_SNPs_94853 0 0 1 0 2 GTPBP1 chr22:39117870 5'GT 39117870 Upstream 88bp
chr17 40837073 40837073 1 + C T COAD 40837070 + 40837050 40837090 41 TGACCTGCACTTCCACTTCACTGCGCGCTACATCCGCATCG TGACCTGCACTTCCACTTCACTGTGCGCTACATCCGCATCG < 41bp 0.704358100466985 0.486816809059322 0.13614905 0.13293526 prediction 0.40871620093397 Functional Loss - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40837070 chr17:40837073 nonsynonymous SNV 0.758 5 24 hm5C_associated_SNPs_94854 0 0 1 0 2 CNTNAP1 chr17:40837009 3'AG 40837009 Downstream 65bp
chr17 40837073 40837073 1 + C T COAD 40837070 + 40837050 40837090 41 TGACCTGCACTTCCACTTCACTGCGCGCTACATCCGCATCG TGACCTGCACTTCCACTTCACTGTGCGCTACATCCGCATCG < 41bp 0.704358100466985 0.486816809059322 0.13614905 0.13293526 prediction 0.40871620093397 Functional Loss - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40837070 chr17:40837073 nonsynonymous SNV 0.758 5 24 hm5C_associated_SNPs_94854 0 0 1 0 2 CNTNAP1 chr17:40837156 5'GT 40837156 Upstream 84bp
chr12 54677742 54677742 1 + C T CESC 54677740 + 54677720 54677760 41 AGGCCAATACTTTGCAAAACCACGAAACCAAGGTATGGTAT AGGCCAATACTTTGCAAAACCATGAAACCAAGGTATGGTAT < 41bp 0.873415437994506 0.669057662948682 0.106684834 0.12265256 prediction 0.408715550091649 Functional Loss - HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54677740 chr12:54677742 stopgain 0.998 0 23 hm5C_associated_SNPs_94855 1 0 1 0 1 HNRNPA1;HNRNPA1P10 chr12:54677751 5'GT 54677751 Upstream 10bp
chr21 45744529 45744529 1 + C T rs199655624 45744527 + 45744507 45744547 41 TCGAGGACCCTTTCAACATCCACGACTTAAAGGTGAGCCCA TCGAGGACCCTTTCAACATCCATGACTTAAAGGTGAGCCCA < 41bp 0.860553184083058 0.656197645271472 0.12384161 0.1722942 prediction 0.408711077623173 Functional Loss - PFKL ENSG00000141959 CDS Human protein_coding chr21:45744527 chr21:45744529 synonymous SNV . 0 23 hm5C_associated_SNPs_94857 0 0 1 0 1 PFKL chr21:45744538 5'GT 45744538 Upstream 10bp
chr11 124702864 124702864 1 + G T rs565338693 124702860 + 124702840 124702880 41 CGGAGCTCCCATGCCCTCTCCAGGGCACCACCCTCCAGGCA CGGAGCTCCCATGCCCTCTCCAGGTCACCACCCTCCAGGCA < 41bp 0.753050420748104 0.548695324596635 0.9201406 0.9194267 prediction 0.408710192302937 Functional Loss - LOC100507283 ENSG00000245498 ncRNA_exonic Human antisense chr11:124702860 chr11:124702864 . . 0 25 hm5C_associated_SNPs_94859 0 0 0 0 1 LOC100507283 chr11:124702782 3'AG 124702782 Downstream 83bp
chr13 24167526 24167526 1 + G T UCEC 24167523 + 24167503 24167543 41 AATCAGGAGACTGTAGACAGCAAGAATTCAGGGATCGGTCT AATCAGGAGACTGTAGACAGCAATAATTCAGGGATCGGTCT < 41bp 0.704352797631996 0.316391338141693 0.17439502 0.13721198 prediction 0.408705595263992 Functional Loss - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24167523 chr13:24167526 stopgain 0.994 1 24 hm5C_associated_SNPs_94861 0 0 0 0 2 TNFRSF19 chr13:24167484 3'AG 24167484 Downstream 43bp
chr13 24167526 24167526 1 + G T UCEC 24167523 + 24167503 24167543 41 AATCAGGAGACTGTAGACAGCAAGAATTCAGGGATCGGTCT AATCAGGAGACTGTAGACAGCAATAATTCAGGGATCGGTCT < 41bp 0.704352797631996 0.316391338141693 0.17439502 0.13721198 prediction 0.408705595263992 Functional Loss - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24167523 chr13:24167526 stopgain 0.994 1 24 hm5C_associated_SNPs_94861 0 0 0 0 2 TNFRSF19 chr13:24167594 5'GT 24167594 Upstream 69bp
chr2 103095386 103095386 1 + C T SKCM 103095383 + 103095363 103095403 41 GCGCTGGTGGGCGGCATCATCTTCGGCACCGACCACAAATC GCGCTGGTGGGCGGCATCATCTTTGGCACCGACCACAAATC < 41bp 0.741451659374766 0.537099406897788 0.32431096 0.25793642 prediction 0.408704504953956 Functional Loss - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103095383 chr2:103095386 synonymous SNV . 0 24 hm5C_associated_SNPs_94862 0 0 0 0 1 SLC9A4 chr2:103095298 3'AG 103095298 Downstream 89bp
chr2 69015083 69015083 1 + G T GBM 69015081 + 69015061 69015101 41 AGGAGAGTTGCTGGCACACCCTGTGGAGGTAAGGACCCCTG AGGAGAGTTGCTGGCACACCCTTTGGAGGTAAGGACCCCTG < 41bp 0.704350593520114 0.353233110472209 0.32442677 0.12641102 prediction 0.408701187040227 Functional Loss - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69015081 chr2:69015083 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_94864 0 0 0 0 1 ARHGAP25 chr2:69015088 5'GT 69015088 Upstream 6bp
chr19 13910670 13910670 1 + G A UCEC 13910667 + 13910647 13910687 41 CCCAGAGGGCGAGCACGATGCCCGGGTGCCCTTTACCCGCG CCCAGAGGGCGAGCACGATGCCCAGGTGCCCTTTACCCGCG < 41bp 0.832452692410721 0.628106622284038 0.43251258 0.053500384 prediction 0.408692140253365 Functional Loss - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13910667 chr19:13910670 nonsynonymous SNV 0.981 0 24 hm5C_associated_SNPs_94869 0 0 0 0 1 ZSWIM4 chr19:13910735 5'GT 13910735 Upstream 66bp
chrX 48663851 48663851 1 + G T LUAD 48663849 + 48663829 48663869 41 GACTCCATCTCCCCAGCTTCCCGGAAGGCCCTGAGCGGCTC GACTCCATCTCCCCAGCTTCCCTGAAGGCCCTGAGCGGCTC < 41bp 0.704344407194743 0.36410297559984 0.42054167 0.09666002 prediction 0.408688814389487 Functional Loss - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48663849 chrX:48663851 synonymous SNV . 0 23 hm5C_associated_SNPs_94870 0 0 1 0 2 HDAC6 chrX:48663845 3'AG 48663845 Downstream 7bp
chrX 48663851 48663851 1 + G T LUAD 48663849 + 48663829 48663869 41 GACTCCATCTCCCCAGCTTCCCGGAAGGCCCTGAGCGGCTC GACTCCATCTCCCCAGCTTCCCTGAAGGCCCTGAGCGGCTC < 41bp 0.704344407194743 0.36410297559984 0.42054167 0.09666002 prediction 0.408688814389487 Functional Loss - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48663849 chrX:48663851 synonymous SNV . 0 23 hm5C_associated_SNPs_94870 0 0 1 0 2 HDAC6 chrX:48663929 5'GT 48663929 Upstream 79bp
chr16 28507267 28507267 1 + G T UCEC 28507265 + 28507245 28507285 41 ATTTTAGATGGGGAGGAAGCCAGGACAATCTCAGGCGGGGA ATTTTAGATGGGGAGGAAGCCATGACAATCTCAGGCGGGGA < 41bp 0.91690545251409 0.71256652907291 0.8012862 0.14869934 prediction 0.40867784688236 Functional Loss - APOBR ENSG00000184730 CDS Human protein_coding chr16:28507265 chr16:28507267 nonsynonymous SNV 0.017 2 23 hm5C_associated_SNPs_94874 0 0 0 0 1 APOBR chr16:28507236 3'AG 28507236 Downstream 32bp
chr5 179263448 179263448 1 + G A COAD 179263445 + 179263425 179263465 41 TGTTTCGGCAGAGGCTGACCCGCGGCTGATTGAGTCCCTCT TGTTTCGGCAGAGGCTGACCCGCAGCTGATTGAGTCCCTCT < 41bp 0.816301314739697 0.61196258643789 0.8625916 0.29945987 prediction 0.408677456603614 Functional Loss - SQSTM1 ENSG00000161011 CDS Human protein_coding chr5:179263445 chr5:179263448 nonsynonymous SNV 0.977 4 24 hm5C_associated_SNPs_94875 0 0 1 0 1 SQSTM1 chr5:179263436 3'AG 179263436 Downstream 13bp
chr6 109764087 109764087 1 + G T COAD 109764084 + 109764064 109764104 41 TATCTTGAAACTCGGGACTTCAAGGTGAGGACTTGCCTGTT TATCTTGAAACTCGGGACTTCAATGTGAGGACTTGCCTGTT < 41bp 0.704336523740468 0.301367580181372 0.91230065 0.1977329 prediction 0.408673047480935 Functional Loss - SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109764084 chr6:109764087 nonsynonymous SNV 0.853 1 24 hm5C_associated_SNPs_94877 0 0 1 0 1 SMPD2 chr6:109764087 5'GT 109764087 Upstream 1bp
chr4 5795383 5795383 1 + C T COAD 5795380 + 5795360 5795400 41 CCAGCGTGCTGCAGACACACCTGCGGGAGGACCACGAGGGC CCAGCGTGCTGCAGACACACCTGTGGGAGGACCACGAGGGC < 41bp 0.743778189295909 0.539441908977149 0.51696026 0.2986398 prediction 0.408672560637518 Functional Loss - EVC ENSG00000072840 CDS Human protein_coding chr4:5795380 chr4:5795383 nonsynonymous SNV 0.038 1 24 hm5C_associated_SNPs_94878 0 0 0 0 1 EVC chr4:5795335 3'AG 5795335 Downstream 49bp
chr1 116670823 116670823 1 + C T UCEC 116670820 + 116670800 116670840 41 ATCACTGGCAGCTGAGCTTCCTCCGTGCTGAGCAGGTGTTA ATCACTGGCAGCTGAGCTTCCTCTGTGCTGAGCAGGTGTTA < 41bp 0.779447063371658 0.575112480576907 0.35693508 0.20802563 prediction 0.408669165589501 Functional Loss - MAB21L3 ENSG00000173212 CDS Human protein_coding chr1:116670820 chr1:116670823 nonsynonymous SNV 0.100 2 24 hm5C_associated_SNPs_94880 0 0 0 0 1 MAB21L3 chr1:116670766 3'AG 116670766 Downstream 58bp
chr10 70446129 70446129 1 + G A DLBC 70446126 + 70446106 70446146 41 CTATCAGGTTTGTACCTTAACTCGAGAAGATAACCGCTCTT CTATCAGGTTTGTACCTTAACTCAAGAAGATAACCGCTCTT < 41bp 0.704334492688422 0.46908384818209 0.17853981 0.14967853 prediction 0.408668985376845 Functional Loss - TET1 ENSG00000138336 CDS Human protein_coding chr10:70446126 chr10:70446129 nonsynonymous SNV 0.913 1 24 hm5C_associated_SNPs_94881 0 0 1 0 1 TET1 chr10:70446113 3'AG 70446113 Downstream 17bp
chr4 8295893 8295893 1 + G A UCEC 8295890 + 8295870 8295910 41 CATCCCCTCAGACCGCATCACACGGTTCCTCACAGAGTTCC CATCCCCTCAGACCGCATCACACAGTTCCTCACAGAGTTCC < 41bp 0.704332428158154 0.452147927226549 0.1391634 0.14220417 prediction 0.408664856316308 Functional Loss - HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8295890 chr4:8295893 nonsynonymous SNV 0.898 0 24 hm5C_associated_SNPs_94883 0 0 0 0 2 HTRA3 chr4:8295814 3'AG 8295814 Downstream 80bp
chr4 8295893 8295893 1 + G A UCEC 8295890 + 8295870 8295910 41 CATCCCCTCAGACCGCATCACACGGTTCCTCACAGAGTTCC CATCCCCTCAGACCGCATCACACAGTTCCTCACAGAGTTCC < 41bp 0.704332428158154 0.452147927226549 0.1391634 0.14220417 prediction 0.408664856316308 Functional Loss - HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8295890 chr4:8295893 nonsynonymous SNV 0.898 0 24 hm5C_associated_SNPs_94883 0 0 0 0 2 HTRA3 chr4:8295928 5'GT 8295928 Upstream 36bp
chr4 8295892 8295892 1 + C T UCEC 8295890 + 8295870 8295910 41 CATCCCCTCAGACCGCATCACACGGTTCCTCACAGAGTTCC CATCCCCTCAGACCGCATCACATGGTTCCTCACAGAGTTCC < 41bp 0.704332428158154 0.433416868533223 0.1391634 0.19446898 prediction 0.408664856316308 Functional Loss - HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8295890 chr4:8295892 nonsynonymous SNV 0.903 2 23 hm5C_associated_SNPs_94884 0 0 0 0 2 HTRA3 chr4:8295814 3'AG 8295814 Downstream 79bp
chr4 8295892 8295892 1 + C T UCEC 8295890 + 8295870 8295910 41 CATCCCCTCAGACCGCATCACACGGTTCCTCACAGAGTTCC CATCCCCTCAGACCGCATCACATGGTTCCTCACAGAGTTCC < 41bp 0.704332428158154 0.433416868533223 0.1391634 0.19446898 prediction 0.408664856316308 Functional Loss - HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8295890 chr4:8295892 nonsynonymous SNV 0.903 2 23 hm5C_associated_SNPs_94884 0 0 0 0 2 HTRA3 chr4:8295928 5'GT 8295928 Upstream 37bp
chr12 124798810 124798810 1 + C T SKCM 124798807 + 124798787 124798827 41 GTCTTCTATGCGCCCGTACCCACCGTCACGGCCTACAGCGA GTCTTCTATGCGCCCGTACCCACTGTCACGGCCTACAGCGA < 41bp 0.729614594872189 0.525287827626234 0.021370858 0.02575165 prediction 0.408653534491908 Functional Loss - RFLNA ENSG00000178882 CDS Human protein_coding chr12:124798807 chr12:124798810 synonymous SNV . 0 24 hm5C_associated_SNPs_94886 0 0 0 0 1 RFLNA chr12:124798738 3'AG 124798738 Downstream 73bp
chr4 109543139 109543139 1 + A T PAAD 109543137 + 109543117 109543157 41 TGGTCCAGCGTTTGACATACCGACGTAGGCTTTCCTACAAT TGGTCCAGCGTTTGACATACCGTCGTAGGCTTTCCTACAAT < 41bp 0.728354492330666 0.52402891023278 0.17717451 0.11240518 prediction 0.408651164195772 Functional Loss - RPL34 ENSG00000109475 CDS Human protein_coding chr4:109543137 chr4:109543139 synonymous SNV . 0 23 hm5C_associated_SNPs_94887 0 0 1 0 2 RPL34 chr4:109543107 3'AG 109543107 Downstream 33bp
chr4 109543139 109543139 1 + A T PAAD 109543137 + 109543117 109543157 41 TGGTCCAGCGTTTGACATACCGACGTAGGCTTTCCTACAAT TGGTCCAGCGTTTGACATACCGTCGTAGGCTTTCCTACAAT < 41bp 0.728354492330666 0.52402891023278 0.17717451 0.11240518 prediction 0.408651164195772 Functional Loss - RPL34 ENSG00000109475 CDS Human protein_coding chr4:109543137 chr4:109543139 synonymous SNV . 0 23 hm5C_associated_SNPs_94887 0 0 1 0 2 RPL34 chr4:109543180 5'GT 109543180 Upstream 42bp
chr10 18254542 18254542 1 + G T UCEC 18254538 + 18254518 18254558 41 TCCAGGGTGTTTGTCTGGGACAAGGAAACTTGCCTTCCCCA TCCAGGGTGTTTGTCTGGGACAAGTAAACTTGCCTTCCCCA < 41bp 0.750028160766793 0.545707214004313 0.80443805 0.34085745 prediction 0.408641893524961 Functional Loss - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18254538 chr10:18254542 nonsynonymous SNV 0.967 0 25 hm5C_associated_SNPs_94891 0 0 0 0 1 SLC39A12 chr10:18254619 5'GT 18254619 Upstream 78bp
chr13 20235878 20235878 1 + G A MESO 20235875 + 20235855 20235895 41 ACTGGTGATGCTTGCCGCCGCCGGAGGGCAGGACGACCTCC ACTGGTGATGCTTGCCGCCGCCGAAGGGCAGGACGACCTCC < 41bp 0.823359333298794 0.619040021815886 0.8315761 0.3539925 prediction 0.408638622965815 Functional Loss - MPHOSPH8 ENSG00000196199 CDS Human protein_coding chr13:20235875 chr13:20235878 nonsynonymous SNV 0.270 4 24 hm5C_associated_SNPs_94892 0 0 1 0 1 MPHOSPH8 chr13:20235838 3'AG 20235838 Downstream 41bp
chr2 27826165 27826165 1 + G T UCEC 27826161 + 27826141 27826181 41 ACTTGCATATCACCTGAGGTCAGAGCATGGGCCTGTGAGTA ACTTGCATATCACCTGAGGTCAGATCATGGGCCTGTGAGTA < 41bp 0.721236558114658 0.516918137206795 0.24868289 0.14176005 prediction 0.408636841815726 Functional Loss - ZNF512 ENSG00000243943 CDS Human protein_coding chr2:27826161 chr2:27826165 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_94893 0 0 1 0 1 ZNF512 chr2:27826174 5'GT 27826174 Upstream 10bp
chr3 136714377 136714377 1 + G A STAD 136714374 + 136714354 136714394 41 CTCCAGTACTCCTGTTGCCCCGTGGTGGTCCTCCCAGACAC CTCCAGTACTCCTGTTGCCCCGTAGTGGTCCTCCCAGACAC < 41bp 0.704316305988817 0.442778365686933 0.14379829 0.06030962 prediction 0.408632611977633 Functional Loss - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136714374 chr3:136714377 synonymous SNV . 0 24 hm5C_associated_SNPs_94897 0 0 0 0 1 IL20RB chr3:136714398 5'GT 136714398 Upstream 22bp
chr17 36909435 36909435 1 + G T LUSC 36909432 + 36909412 36909452 41 TCCTATAACGGAGGGGCCGTCATGGCCATGAAGGGGAAGAA TCCTATAACGGAGGGGCCGTCATTGCCATGAAGGGGAAGAA < 41bp 0.704307448988726 0.30841601925573 0.392941 0.1715937 prediction 0.408614897977451 Functional Loss - PSMB3 ENSG00000108294 CDS Human other chr17:36909432 chr17:36909435 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_94899 0 0 1 0 1 PSMB3 chr17:36909403 3'AG 36909403 Downstream 33bp
chr12 64823890 64823890 1 + G A COAD 64823887 + 64823867 64823907 41 ACTTTTTATTTATGAGACAGCTGGAGTGCTGATTGTTAATA ACTTTTTATTTATGAGACAGCTGAAGTGCTGATTGTTAATA < 41bp 0.784204964939914 0.57989991139662 0.12320122 0.07788283 prediction 0.408610107086587 Functional Loss - XPOT ENSG00000184575 CDS Human protein_coding chr12:64823887 chr12:64823890 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_94902 0 0 1 0 1 XPOT chr12:64823829 3'AG 64823829 Downstream 62bp
chr5 73205311 73205311 1 + C T SKCM 73205309 + 73205289 73205329 41 AGCAGCAGGAGGGCCTGTCTCTCGGCCACTCTATCCTCCGA AGCAGCAGGAGGGCCTGTCTCTTGGCCACTCTATCCTCCGA < 41bp 0.831376722113159 0.627073797825304 0.79242796 0.79178727 prediction 0.408605848575709 Functional Loss - ARHGEF28 ENSG00000214944 CDS Human protein_coding chr5:73205309 chr5:73205311 synonymous SNV . 0 23 hm5C_associated_SNPs_94903 0 0 0 0 1 ARHGEF28 chr5:73205237 3'AG 73205237 Downstream 75bp
chr1 9017326 9017326 1 + G T STAD 9017323 + 9017303 9017343 41 GGCTCTGAGCACACCGTGGACGGGATCAGACATGTGATCGA GGCTCTGAGCACACCGTGGACGGTATCAGACATGTGATCGA < 41bp 0.938696388790215 0.734393709595368 0.7479653 0.18290436 prediction 0.408605358389694 Functional Loss - CA6 ENSG00000131686 CDS Human protein_coding chr1:9017323 chr1:9017326 synonymous SNV . 0 24 hm5C_associated_SNPs_94904 0 0 0 0 1 CA6 chr1:9017344 5'GT 9017344 Upstream 19bp
chrX 48649666 48649666 1 + G A CESC 48649663 + 48649643 48649683 41 GCAGCAGCTTCCTCCACTGCCCCGAGCACAGCCACCGCTGC GCAGCAGCTTCCTCCACTGCCCCAAGCACAGCCACCGCTGC < 41bp 0.832264829957643 0.627963091639094 0.16152671 0.097768545 prediction 0.408603476637097 Functional Loss - GATA1 ENSG00000102145 CDS Human protein_coding chrX:48649663 chrX:48649666 synonymous SNV . 0 24 hm5C_associated_SNPs_94905 0 0 0 0 1 GATA1 chrX:48649736 5'GT 48649736 Upstream 71bp
chr9 140109371 140109371 1 + C T SKCM 140109369 + 140109349 140109389 41 AACTCCTGGCCTGTCTATCCCTCCATGAGCTGGAGCGGGAG AACTCCTGGCCTGTCTATCCCTTCATGAGCTGGAGCGGGAG < 41bp 0.704300390116457 0.40628352945021 0.97349834 0.13895631 prediction 0.408600780232913 Functional Loss - NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140109369 chr9:140109371 synonymous SNV . 0 23 hm5C_associated_SNPs_94907 0 0 1 0 1 NDOR1 chr9:140109470 5'GT 140109470 Upstream 100bp
chr9 140109372 140109372 1 + C T SKCM 140109369 + 140109349 140109389 41 AACTCCTGGCCTGTCTATCCCTCCATGAGCTGGAGCGGGAG AACTCCTGGCCTGTCTATCCCTCTATGAGCTGGAGCGGGAG < 41bp 0.704300390116457 0.470702580965061 0.97349834 0.9511694 prediction 0.408600780232913 Functional Loss - NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140109369 chr9:140109372 nonsynonymous SNV 0.571 2 24 hm5C_associated_SNPs_94908 0 0 1 0 1 NDOR1 chr9:140109470 5'GT 140109470 Upstream 99bp
chr16 23208648 23208648 1 + G A SKCM 23208645 + 23208625 23208665 41 CCCATTCCTCGTGTCCTCCACTGGAGCTAAGGTGATCATCC CCCATTCCTCGTGTCCTCCACTGAAGCTAAGGTGATCATCC < 41bp 0.822227043637845 0.61792759756748 0.21615222 0.11413339 prediction 0.408598892140731 Functional Loss - SCNN1G ENSG00000166828 CDS Human protein_coding chr16:23208645 chr16:23208648 nonsynonymous SNV 0.980 4 24 hm5C_associated_SNPs_94910 0 0 0 0 1 SCNN1G chr16:23208585 3'AG 23208585 Downstream 64bp
chr7 98881508 98881508 1 + T C rs145203369 98881507 + 98881487 98881527 41 TCTCTGTAGCTGGAGGATAACTGGGAGCAGGAAAAGAAAAT TCTCTGTAGCTGGAGGATAACCGGGAGCAGGAAAAGAAAAT < 41bp 0.734606626409096 0.530311758499403 0.8985385 0.90238565 prediction 0.408589735819386 Functional Loss - MYH16 ENSG00000002079 ncRNA_exonic Human transcribed_unitary_pseudogene chr7:98881507 chr7:98881508 . . 0 22 hm5C_associated_SNPs_94912 0 0 0 0 1 MYH16 chr7:98881496 3'AG 98881496 Downstream 13bp
chr4 160262774 160262774 1 + G A PAAD 160262771 + 160262751 160262791 41 TTTGTTCAGATGAAGATGCTCAGGAGTTGTTGAGAGAGAGT TTTGTTCAGATGAAGATGCTCAGAAGTTGTTGAGAGAGAGT < 41bp 0.704294638306841 0.475267422566709 0.880594 0.39785522 prediction 0.408589276613682 Functional Loss - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160262771 chr4:160262774 nonsynonymous SNV 0.988 2 24 hm5C_associated_SNPs_94913 0 0 0 0 1 RAPGEF2 chr4:160262716 3'AG 160262716 Downstream 59bp
chr19 17651298 17651298 1 + G A STAD 17651295 + 17651275 17651315 41 CTGCTGCGCACCGTGGAAGCCTCGCTCGAGGCGGTGCGGAC CTGCTGCGCACCGTGGAAGCCTCACTCGAGGCGGTGCGGAC < 41bp 0.704293616085115 0.46330515963096 0.060671687 0.06922525 prediction 0.408587232170229 Functional Loss - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17651295 chr19:17651298 synonymous SNV . 0 24 hm5C_associated_SNPs_94915 0 0 0 0 2 FAM129C chr19:17651201 3'AG 17651201 Downstream 98bp
chr19 17651298 17651298 1 + G A STAD 17651295 + 17651275 17651315 41 CTGCTGCGCACCGTGGAAGCCTCGCTCGAGGCGGTGCGGAC CTGCTGCGCACCGTGGAAGCCTCACTCGAGGCGGTGCGGAC < 41bp 0.704293616085115 0.46330515963096 0.060671687 0.06922525 prediction 0.408587232170229 Functional Loss - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17651295 chr19:17651298 synonymous SNV . 0 24 hm5C_associated_SNPs_94915 0 0 0 0 2 FAM129C chr19:17651391 5'GT 17651391 Upstream 94bp
chr4 187192828 187192828 1 + C T LUSC 187192826 + 187192806 187192846 41 GGACATTACTACGGTCTTCACACCAAGCGCCAAGTACTGCC GGACATTACTACGGTCTTCACATCAAGCGCCAAGTACTGCC < 41bp 0.880083075153845 0.675790351551679 0.216151 0.23654774 prediction 0.408585447204331 Functional Loss - F11 ENSG00000088926 CDS Human protein_coding chr4:187192826 chr4:187192828 nonsynonymous SNV 0.013 5 23 hm5C_associated_SNPs_94917 0 0 1 0 2 F11 chr4:187192763 3'AG 187192763 Downstream 66bp
chr4 187192828 187192828 1 + C T LUSC 187192826 + 187192806 187192846 41 GGACATTACTACGGTCTTCACACCAAGCGCCAAGTACTGCC GGACATTACTACGGTCTTCACATCAAGCGCCAAGTACTGCC < 41bp 0.880083075153845 0.675790351551679 0.216151 0.23654774 prediction 0.408585447204331 Functional Loss - F11 ENSG00000088926 CDS Human protein_coding chr4:187192826 chr4:187192828 nonsynonymous SNV 0.013 5 23 hm5C_associated_SNPs_94917 0 0 1 0 2 F11 chr4:187192925 5'GT 187192925 Upstream 98bp
chr20 30616912 30616912 1 + G T SARC 30616910 + 30616890 30616930 41 GTCTGGGCTTGGAGCAGTTACAGGATTACATGGTCACGGTG GTCTGGGCTTGGAGCAGTTACATGATTACATGGTCACGGTG < 41bp 0.886791833024411 0.682500929366123 0.8931096 0.3812598 prediction 0.408581807316576 Functional Loss - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30616910 chr20:30616912 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_94918 0 0 0 0 1 CCM2L chr20:30616927 5'GT 30616927 Upstream 16bp
chr15 78454661 78454661 1 + G T LUSC 78454658 + 78454638 78454678 41 TGAGTTTGCCTTTGAGTATGCCCGGAACAACCACCGGAGCA TGAGTTTGCCTTTGAGTATGCCCTGAACAACCACCGGAGCA < 41bp 0.704286703377995 0.310926011901901 0.24317813 0.12979388 prediction 0.40857340675599 Functional Loss - IDH3A ENSG00000166411 CDS Human protein_coding chr15:78454658 chr15:78454661 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_94920 0 0 1 0 2 IDH3A chr15:78454576 3'AG 78454576 Downstream 86bp
chr15 78454661 78454661 1 + G T LUSC 78454658 + 78454638 78454678 41 TGAGTTTGCCTTTGAGTATGCCCGGAACAACCACCGGAGCA TGAGTTTGCCTTTGAGTATGCCCTGAACAACCACCGGAGCA < 41bp 0.704286703377995 0.310926011901901 0.24317813 0.12979388 prediction 0.40857340675599 Functional Loss - IDH3A ENSG00000166411 CDS Human protein_coding chr15:78454658 chr15:78454661 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_94920 0 0 1 0 2 IDH3A chr15:78454709 5'GT 78454709 Upstream 49bp
chr19 35422831 35422831 1 + G T LUSC 35422828 + 35422808 35422848 41 CCCAGCAGGAGTGGGAGAGTCTGGACTCTTCCCAGAGGGGC CCCAGCAGGAGTGGGAGAGTCTGTACTCTTCCCAGAGGGGC < 41bp 0.909334476384108 0.705049106437413 0.61951274 0.15098271 prediction 0.408570739893388 Functional Loss - ZNF30 ENSG00000168661 CDS Human protein_coding chr19:35422828 chr19:35422831 nonsynonymous SNV 0.772 2 24 hm5C_associated_SNPs_94921 0 0 1 0 2 ZNF30 chr19:35422747 3'AG 35422747 Downstream 85bp
chr19 35422831 35422831 1 + G T LUSC 35422828 + 35422808 35422848 41 CCCAGCAGGAGTGGGAGAGTCTGGACTCTTCCCAGAGGGGC CCCAGCAGGAGTGGGAGAGTCTGTACTCTTCCCAGAGGGGC < 41bp 0.909334476384108 0.705049106437413 0.61951274 0.15098271 prediction 0.408570739893388 Functional Loss - ZNF30 ENSG00000168661 CDS Human protein_coding chr19:35422828 chr19:35422831 nonsynonymous SNV 0.772 2 24 hm5C_associated_SNPs_94921 0 0 1 0 2 ZNF30 chr19:35422897 5'GT 35422897 Upstream 67bp
chr8 27645464 27645464 1 + A C rs57479434 27645463 + 27645443 27645483 41 TCATGAAACAGACCAATATCCAGAAAAATACTAATACCAGA TCATGAAACAGACCAATATCCCGAAAAATACTAATACCAGA < 41bp 0.704284409289292 0.439530675924214 0.509272 0.11807865 prediction 0.408568818578584 Functional Loss - ESCO2 ENSG00000171320 CDS Human protein_coding chr8:27645463 chr8:27645464 nonsynonymous SNV 0.034 0 22 hm5C_associated_SNPs_94922 1 0 0 1 2 ESCO2 chr8:27645402 3'AG 27645402 Downstream 63bp
chr8 27645464 27645464 1 + A C rs57479434 27645463 + 27645443 27645483 41 TCATGAAACAGACCAATATCCAGAAAAATACTAATACCAGA TCATGAAACAGACCAATATCCCGAAAAATACTAATACCAGA < 41bp 0.704284409289292 0.439530675924214 0.509272 0.11807865 prediction 0.408568818578584 Functional Loss - ESCO2 ENSG00000171320 CDS Human protein_coding chr8:27645463 chr8:27645464 nonsynonymous SNV 0.034 0 22 hm5C_associated_SNPs_94922 1 0 0 1 2 ESCO2 chr8:27645519 5'GT 27645519 Upstream 56bp
chr22 30803541 30803541 1 + G A BLCA 30803538 + 30803518 30803558 41 AAACAGGACCTGCTGAGGACCAAGATGCGGGAGTGTGAGCT AAACAGGACCTGCTGAGGACCAAAATGCGGGAGTGTGAGCT < 41bp 0.790435609366068 0.586151798888493 0.18074858 0.09309077 prediction 0.40856762095515 Functional Loss - SEC14L2 ENSG00000100003 CDS Human protein_coding chr22:30803538 chr22:30803541 synonymous SNV . 0 24 hm5C_associated_SNPs_94923 0 0 0 0 1 SEC14L2 chr22:30803592 5'GT 30803592 Upstream 52bp
chr6 118015230 118015230 1 + C T rs146009370 118015227 + 118015207 118015247 41 TTTGGCAGTGAAGGTGCTGTCTCCGGAAGATGGAAAAGCAG TTTGGCAGTGAAGGTGCTGTCTCTGGAAGATGGAAAAGCAG < 41bp 0.795474817178628 0.59119200711497 0.22294074 0.066601574 prediction 0.408565620127315 Functional Loss - NUS1 ENSG00000153989 CDS Human protein_coding chr6:118015227 chr6:118015230 nonsynonymous SNV 0.980 1 24 hm5C_associated_SNPs_94925 0 0 0 0 1 NUS1 chr6:118015194 3'AG 118015194 Downstream 37bp
chr1 8403835 8403835 1 + G A rs116783930 8403832 + 8403812 8403852 41 AGGGTCCAGTGCGGACGGCACCCGGCGGGGCATGGGCGTGG AGGGTCCAGTGCGGACGGCACCCAGCGGGGCATGGGCGTGG < 41bp 0.704281539006482 0.453289366660058 0.30879772 0.10300976 prediction 0.408563078012965 Functional Loss - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8403832 chr1:8403835 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_94926 0 0 0 0 1 SLC45A1 chr1:8403807 3'AG 8403807 Downstream 29bp
chr9 131262420 131262420 1 + C T TGCT 131262417 + 131262397 131262437 41 CAGTCCGAGAGCACCAACCGCAGCATGCAGAACTACGTCCA CAGTCCGAGAGCACCAACCGCAGTATGCAGAACTACGTCCA < 41bp 0.722647679600028 0.518366933356847 0.41623616 0.60047907 prediction 0.408561492486362 Functional Loss - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131262417 chr9:131262420 synonymous SNV . 0 24 hm5C_associated_SNPs_94927 0 0 1 0 1 ODF2 chr9:131262346 3'AG 131262346 Downstream 75bp
chr3 20167414 20167414 1 + A C rs373721059 20167410 + 20167390 20167430 41 ATCTCAGACCAATTTTCTGTCAGCACACTCGGCCAGGGATG ATCTCAGACCAATTTTCTGTCAGCCCACTCGGCCAGGGATG < 41bp 0.704280025769464 0.285258723958994 0.7843988 0.5324964 prediction 0.408560051538928 Functional Loss - KAT2B ENSG00000114166 CDS Human protein_coding chr3:20167410 chr3:20167414 synonymous SNV . 0 25 hm5C_associated_SNPs_94928 0 0 0 0 1 KAT2B chr3:20167397 3'AG 20167397 Downstream 18bp
chr19 42351574 42351574 1 + G T UCEC 42351572 + 42351552 42351592 41 GGGATGAGACCAGAGACCCCCAGAGCACAGAGCTGATCCCC GGGATGAGACCAGAGACCCCCATAGCACAGAGCTGATCCCC < 41bp 0.704279942393997 0.335261243742389 0.69309634 0.10507411 prediction 0.408559884787994 Functional Loss - DMRTC2 ENSG00000142025 CDS Human protein_coding chr19:42351572 chr19:42351574 nonsynonymous SNV 0.101 1 23 hm5C_associated_SNPs_94929 0 0 0 0 1 DMRTC2 chr19:42351493 3'AG 42351493 Downstream 82bp
chr22 45826804 45826804 1 + C T CESC 45826801 + 45826781 45826821 41 GGCTCCAGGAAGAAAAGCGCCAGCGAGACCTGGACTGGGAC GGCTCCAGGAAGAAAAGCGCCAGTGAGACCTGGACTGGGAC < 41bp 0.722775653483791 0.518496741193327 0.591081 0.76035345 prediction 0.408557824580928 Functional Loss - RIBC2 ENSG00000128408 CDS Human protein_coding chr22:45826801 chr22:45826804 stopgain 0.693 0 24 hm5C_associated_SNPs_94930 0 0 0 0 1 RIBC2 chr22:45826780 3'AG 45826780 Downstream 25bp
chr16 3582813 3582813 1 + C T UCEC 3582811 + 3582791 3582831 41 CCTGGCAAACGCATTGTGGGCACGATGCAAGGTGGAGACTC CCTGGCAAACGCATTGTGGGCATGATGCAAGGTGGAGACTC < 41bp 0.858690379167493 0.654411703570684 0.105853975 0.16899642 prediction 0.408557351193617 Functional Loss - CLUAP1 ENSG00000103351 CDS Human protein_coding chr16:3582811 chr16:3582813 nonsynonymous SNV 0.171 2 23 hm5C_associated_SNPs_94931 0 0 0 0 2 CLUAP1 chr16:3582786 3'AG 3582786 Downstream 28bp
chr16 3582813 3582813 1 + C T UCEC 3582811 + 3582791 3582831 41 CCTGGCAAACGCATTGTGGGCACGATGCAAGGTGGAGACTC CCTGGCAAACGCATTGTGGGCATGATGCAAGGTGGAGACTC < 41bp 0.858690379167493 0.654411703570684 0.105853975 0.16899642 prediction 0.408557351193617 Functional Loss - CLUAP1 ENSG00000103351 CDS Human protein_coding chr16:3582811 chr16:3582813 nonsynonymous SNV 0.171 2 23 hm5C_associated_SNPs_94931 0 0 0 0 2 CLUAP1 chr16:3582841 5'GT 3582841 Upstream 29bp
chr16 58545390 58545390 1 + G A PRAD 58545387 + 58545367 58545407 41 GCATCCCTCACCAGTGCCAGCTCGGTGGATGGCAGCCGCCC GCATCCCTCACCAGTGCCAGCTCAGTGGATGGCAGCCGCCC < 41bp 0.799126292881405 0.594851545143509 0.18851036 0.23612061 prediction 0.408549495475793 Functional Loss - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58545387 chr16:58545390 synonymous SNV . 0 24 hm5C_associated_SNPs_94932 0 0 0 0 1 NDRG4 chr16:58545326 3'AG 58545326 Downstream 65bp
chr17 7950005 7950005 1 + G A UCEC 7950002 + 7949982 7950022 41 GCAGCTGCTGATCCCGCACACCCGATACACCCTGCACATCA GCAGCTGCTGATCCCGCACACCCAATACACCCTGCACATCA < 41bp 0.704271181433228 0.451944139691077 0.064070284 0.1292474 prediction 0.408542362866457 Functional Loss - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7950002 chr17:7950005 nonsynonymous SNV 0.001 5 24 hm5C_associated_SNPs_94935 0 0 0 0 1 ALOX15B chr17:7949986 3'AG 7949986 Downstream 20bp
chr17 4648177 4648177 1 + G C STAD 4648174 + 4648154 4648194 41 TCTGTCTGCAGGATTTAACTCCGGGTTTGCTCTCAAGGATA TCTGTCTGCAGGATTTAACTCCGCGTTTGCTCTCAAGGATA < 41bp 0.710630359170448 0.506359857331127 0.9270712 0.6940839 prediction 0.408541003678643 Functional Loss - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4648174 chr17:4648177 nonsynonymous SNV 0.983 3 24 hm5C_associated_SNPs_94936 0 0 0 0 3 ZMYND15 chr17:4648141 3'AG 4648141 Downstream 37bp
chr17 4648177 4648177 1 + G C STAD 4648174 + 4648154 4648194 41 TCTGTCTGCAGGATTTAACTCCGGGTTTGCTCTCAAGGATA TCTGTCTGCAGGATTTAACTCCGCGTTTGCTCTCAAGGATA < 41bp 0.710630359170448 0.506359857331127 0.9270712 0.6940839 prediction 0.408541003678643 Functional Loss - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4648174 chr17:4648177 nonsynonymous SNV 0.983 3 24 hm5C_associated_SNPs_94936 0 0 0 0 3 ZMYND15 chr17:4648165 3'AG 4648165 Downstream 13bp
chr17 4648177 4648177 1 + G C STAD 4648174 + 4648154 4648194 41 TCTGTCTGCAGGATTTAACTCCGGGTTTGCTCTCAAGGATA TCTGTCTGCAGGATTTAACTCCGCGTTTGCTCTCAAGGATA < 41bp 0.710630359170448 0.506359857331127 0.9270712 0.6940839 prediction 0.408541003678643 Functional Loss - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4648174 chr17:4648177 nonsynonymous SNV 0.983 3 24 hm5C_associated_SNPs_94936 0 0 0 0 3 ZMYND15 chr17:4648223 5'GT 4648223 Upstream 47bp
chr1 219384841 219384841 1 + A C HNSC 219384840 + 219384820 219384860 41 ATCTTCTTCTCTAGGCTCTTCAGAAGAGTAATGGTGTACTT ATCTTCTTCTCTAGGCTCTTCCGAAGAGTAATGGTGTACTT < 41bp 0.704269392445792 0.454162475964467 0.6220717 0.31759876 prediction 0.408538784891585 Functional Loss - LYPLAL1 ENSG00000143353 CDS Human protein_coding chr1:219384840 chr1:219384841 nonsynonymous SNV 0.917 1 22 hm5C_associated_SNPs_94937 0 0 1 0 1 LYPLAL1 chr1:219384834 3'AG 219384834 Downstream 8bp
chr19 3282231 3282231 1 + C T GBM 3282228 + 3282208 3282248 41 CAGATAGGCGCCGTCAGCCTCAACGGGCTGCCTGCCACACC CAGATAGGCGCCGTCAGCCTCAATGGGCTGCCTGCCACACC < 41bp 0.70426913748682 0.487722251903198 0.7302519 0.69246745 prediction 0.40853827497364 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3282228 chr19:3282231 synonymous SNV . 0 24 hm5C_associated_SNPs_94938 0 0 0 0 1 CELF5 chr19:3282265 5'GT 3282265 Upstream 35bp
chr1 33547955 33547955 1 + G A SKCM 33547952 + 33547932 33547972 41 CTGGGGGCCTCACAGGCCACCACGGTGAGGGGCTGGGAATG CTGGGGGCCTCACAGGCCACCACAGTGAGGGGCTGGGAATG < 41bp 0.704268279049664 0.4708364515071 0.27865383 0.3957971 prediction 0.408536558099329 Functional Loss - AZIN2 ENSG00000142920 CDS Human protein_coding chr1:33547952 chr1:33547955 synonymous SNV . 0 24 hm5C_associated_SNPs_94940 0 0 0 0 1 AZIN2 chr1:33547955 5'GT 33547955 Upstream 1bp
chr1 236908064 236908064 1 + C T STAD 236908062 + 236908042 236908082 41 GTGGAGCAGATCGCAGCCATCGCGCAGGAGCTCAAGTATGT GTGGAGCAGATCGCAGCCATCGTGCAGGAGCTCAAGTATGT < 41bp 0.704267390705804 0.427354887548117 0.34210235 0.36927456 prediction 0.408534781411608 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236908062 chr1:236908064 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_94942 0 0 0 0 1 ACTN2 chr1:236908076 5'GT 236908076 Upstream 13bp
chr2 171371510 171371510 1 + C T UCEC 171371507 + 171371487 171371527 41 GGAAGTGCCGAGGTTCAAGACTGCAGCGAGCCTGGTGACCA GGAAGTGCCGAGGTTCAAGACTGTAGCGAGCCTGGTGACCA < 41bp 0.727946848277286 0.523679874868469 0.25607145 0.08889729 prediction 0.408533946817635 Functional Loss - MYO3B ENSG00000071909 CDS Human protein_coding chr2:171371507 chr2:171371510 synonymous SNV . 0 24 hm5C_associated_SNPs_94944 0 0 0 0 2 MYO3B chr2:171371431 3'AG 171371431 Downstream 80bp
chr2 171371510 171371510 1 + C T UCEC 171371507 + 171371487 171371527 41 GGAAGTGCCGAGGTTCAAGACTGCAGCGAGCCTGGTGACCA GGAAGTGCCGAGGTTCAAGACTGTAGCGAGCCTGGTGACCA < 41bp 0.727946848277286 0.523679874868469 0.25607145 0.08889729 prediction 0.408533946817635 Functional Loss - MYO3B ENSG00000071909 CDS Human protein_coding chr2:171371507 chr2:171371510 synonymous SNV . 0 24 hm5C_associated_SNPs_94944 0 0 0 0 2 MYO3B chr2:171371532 5'GT 171371532 Upstream 23bp
chr12 109294226 109294226 1 + G T LAML 109294224 + 109294204 109294244 41 GGCTACGGGCTCACCATCCACTGGGGATGTGCCCTGGAGGC GGCTACGGGCTCACCATCCACTTGGGATGTGCCCTGGAGGC < 41bp 0.915078986458855 0.710814982684145 0.21411481 0.038840175 prediction 0.40852800754942 Functional Loss - DAO ENSG00000110887 CDS Human protein_coding chr12:109294224 chr12:109294226 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_94948 0 0 0 0 1 DAO chr12:109294180 3'AG 109294180 Downstream 47bp
chr19 15651282 15651282 1 + C T rs149616338 15651279 + 15651259 15651299 41 AGGAAGATGAGTGATTATATCTCCGCTATCATTGAACTGAG AGGAAGATGAGTGATTATATCTCTGCTATCATTGAACTGAG < 41bp 0.704261717721814 0.48345376613662 0.24580804 0.31305957 prediction 0.408523435443628 Functional Loss - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15651279 chr19:15651282 synonymous SNV . 0 24 hm5C_associated_SNPs_94950 1 0 0 0 1 CYP4F22 chr19:15651261 3'AG 15651261 Downstream 22bp
chr19 15651283 15651283 1 + G T GBM 15651279 + 15651259 15651299 41 AGGAAGATGAGTGATTATATCTCCGCTATCATTGAACTGAG AGGAAGATGAGTGATTATATCTCCTCTATCATTGAACTGAG < 41bp 0.704261717721814 0.496845642629376 0.24580804 0.15835938 prediction 0.408523435443628 Functional Loss - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15651279 chr19:15651283 nonsynonymous SNV 0.067 0 25 hm5C_associated_SNPs_94951 0 0 0 0 1 CYP4F22 chr19:15651261 3'AG 15651261 Downstream 23bp
chr1 15642937 15642937 1 + G A rs576506387 15642934 + 15642914 15642954 41 ACAGGGAGCTCAGGGAAGCCCAGGAGAAAGAGTTAAAACTC ACAGGGAGCTCAGGGAAGCCCAGAAGAAAGAGTTAAAACTC < 41bp 0.80031297848162 0.596051386402426 0.909047 0.8825358 prediction 0.408523184158389 Functional Loss - FHAD1 ENSG00000142621 CDS Human protein_coding chr1:15642934 chr1:15642937 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_94952 0 0 0 0 2 FHAD1 chr1:15642874 3'AG 15642874 Downstream 64bp
chr1 15642937 15642937 1 + G A rs576506387 15642934 + 15642914 15642954 41 ACAGGGAGCTCAGGGAAGCCCAGGAGAAAGAGTTAAAACTC ACAGGGAGCTCAGGGAAGCCCAGAAGAAAGAGTTAAAACTC < 41bp 0.80031297848162 0.596051386402426 0.909047 0.8825358 prediction 0.408523184158389 Functional Loss - FHAD1 ENSG00000142621 CDS Human protein_coding chr1:15642934 chr1:15642937 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_94952 0 0 0 0 2 FHAD1 chr1:15642963 5'GT 15642963 Upstream 27bp
chr12 53823407 53823407 1 + G T CESC 53823403 + 53823383 53823423 41 CCACAAGGCCCAGCTGCCATCATGGAAGTGAGTTCTCTGGA CCACAAGGCCCAGCTGCCATCATGTAAGTGAGTTCTCTGGA < 41bp 0.740094489562725 0.535833200147858 0.5983482 0.29260123 prediction 0.408522578829735 Functional Loss - AMHR2 ENSG00000135409 CDS Human protein_coding chr12:53823403 chr12:53823407 stopgain 0.995 0 25 hm5C_associated_SNPs_94953 0 0 0 0 1 AMHR2 chr12:53823409 5'GT 53823409 Upstream 3bp
chr1 34666628 34666628 1 + T C LUAD 34666627 + 34666607 34666647 41 TGGAAGTGGATGGGCCGGAGCTGAAATGTGAGCTGACCTAC TGGAAGTGGATGGGCCGGAGCCGAAATGTGAGCTGACCTAC < 41bp 0.830460602042343 0.626200720035192 0.4330594 0.48680016 prediction 0.408519764014302 Functional Loss - C1orf94 ENSG00000142698 CDS Human protein_coding chr1:34666627 chr1:34666628 nonsynonymous SNV 0.062 0 22 hm5C_associated_SNPs_94954 0 0 0 0 1 C1orf94 chr1:34666633 5'GT 34666633 Upstream 6bp
chr11 551727 551727 1 + G A COAD 551724 + 551704 551744 41 GAGACGCAGTCCCGGGCCTCCAGGCCCTGGCCCTTCTCCCT GAGACGCAGTCCCGGGCCTCCAGACCCTGGCCCTTCTCCCT < 41bp 0.704257413687087 0.454941636040698 0.8813608 0.854356 prediction 0.408514827374174 Functional Loss - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:551724 chr11:551727 synonymous SNV . 0 24 hm5C_associated_SNPs_94956 0 0 0 0 1 LRRC56 chr11:551651 3'AG 551651 Downstream 77bp
chr6 168430274 168430274 1 + G T OV 168430270 + 168430250 168430290 41 GTCCTGGCCTTCCCAGATGACATGGACCTCAGGTCAGCTTC GTCCTGGCCTTCCCAGATGACATGTACCTCAGGTCAGCTTC < 41bp 0.746112028656423 0.541855907817038 0.22648004 0.06754923 prediction 0.408512241678771 Functional Loss - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168430270 chr6:168430274 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_94957 0 0 0 0 1 KIF25 chr6:168430357 5'GT 168430357 Upstream 84bp
chr19 11548910 11548910 1 + G A STAD 11548907 + 11548887 11548927 41 GACTGCTGCGATGGAACAGACGAGTACAACAGCGGCGTCAT GACTGCTGCGATGGAACAGACGAATACAACAGCGGCGTCAT < 41bp 0.704255845582392 0.453772203634226 0.3806082 0.18921477 prediction 0.408511691164785 Functional Loss - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11548907 chr19:11548910 synonymous SNV . 0 24 hm5C_associated_SNPs_94958 0 0 1 0 2 PRKCSH chr19:11548888 3'AG 11548888 Downstream 23bp
chr19 11548910 11548910 1 + G A STAD 11548907 + 11548887 11548927 41 GACTGCTGCGATGGAACAGACGAGTACAACAGCGGCGTCAT GACTGCTGCGATGGAACAGACGAATACAACAGCGGCGTCAT < 41bp 0.704255845582392 0.453772203634226 0.3806082 0.18921477 prediction 0.408511691164785 Functional Loss - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11548907 chr19:11548910 synonymous SNV . 0 24 hm5C_associated_SNPs_94958 0 0 1 0 2 PRKCSH chr19:11548945 5'GT 11548945 Upstream 36bp
chr4 15556832 15556832 1 + C T COAD 15556830 + 15556810 15556850 41 GCCCCTTTGATGCAGCTTATCTCGGTATGTAGCAGGAGGCA GCCCCTTTGATGCAGCTTATCTTGGTATGTAGCAGGAGGCA < 41bp 0.704253995794125 0.424202743840106 0.09934902 0.049994767 prediction 0.40850799158825 Functional Loss - CC2D2A ENSG00000048342 CDS Human protein_coding chr4:15556830 chr4:15556832 nonsynonymous SNV 0.994 0 23 hm5C_associated_SNPs_94960 1 0 0 1 1 CC2D2A chr4:15556833 5'GT 15556833 Upstream 2bp
chr14 96997831 96997831 1 + G T UCEC 96997828 + 96997808 96997848 41 TCAGATTGATATTTTGTTTGCAAGATTAGCACTGCAGACAA TCAGATTGATATTTTGTTTGCAATATTAGCACTGCAGACAA < 41bp 0.704249355945681 0.336589171437339 0.37065148 0.17519915 prediction 0.408498711891362 Functional Loss - PAPOLA ENSG00000090060 CDS Human protein_coding chr14:96997828 chr14:96997831 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_94961 0 0 1 0 2 PAPOLA chr14:96997812 3'AG 96997812 Downstream 20bp
chr14 96997831 96997831 1 + G T UCEC 96997828 + 96997808 96997848 41 TCAGATTGATATTTTGTTTGCAAGATTAGCACTGCAGACAA TCAGATTGATATTTTGTTTGCAATATTAGCACTGCAGACAA < 41bp 0.704249355945681 0.336589171437339 0.37065148 0.17519915 prediction 0.408498711891362 Functional Loss - PAPOLA ENSG00000090060 CDS Human protein_coding chr14:96997828 chr14:96997831 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_94961 0 0 1 0 2 PAPOLA chr14:96997923 5'GT 96997923 Upstream 93bp
chr19 46145154 46145154 1 + G C rs549506794 46145150 + 46145130 46145170 41 CCACGAGGTCTTGGAAGAGGCTGGGGGTCCCGGCCTTGTGC CCACGAGGTCTTGGAAGAGGCTGGCGGTCCCGGCCTTGTGC < 41bp 0.758357293057851 0.55411345624572 0.91196775 0.86265683 prediction 0.408487673624262 Functional Loss - EML2-AS1 ENSG00000267757 UTR5 Human processed_transcript chr19:46145150 chr19:46145154 . . 0 25 hm5C_associated_SNPs_94964 0 0 1 0 1 EML2-AS1 chr19:46145137 3'AG 46145137 Downstream 18bp
chr2 24245737 24245737 1 + C T COAD 24245734 + 24245714 24245754 41 CGCTGTGGGAGTGGGTTCTCCAGCGCTTTGGGAAGAAGACG CGCTGTGGGAGTGGGTTCTCCAGTGCTTTGGGAAGAAGACG < 41bp 0.705124877303759 0.50088334874356 0.5992566 0.4556447 prediction 0.408483057120397 Functional Loss - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24245734 chr2:24245737 nonsynonymous SNV 0.643 4 24 hm5C_associated_SNPs_94967 0 0 0 0 2 MFSD2B chr2:24245692 3'AG 24245692 Downstream 46bp
chr2 24245737 24245737 1 + C T COAD 24245734 + 24245714 24245754 41 CGCTGTGGGAGTGGGTTCTCCAGCGCTTTGGGAAGAAGACG CGCTGTGGGAGTGGGTTCTCCAGTGCTTTGGGAAGAAGACG < 41bp 0.705124877303759 0.50088334874356 0.5992566 0.4556447 prediction 0.408483057120397 Functional Loss - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24245734 chr2:24245737 nonsynonymous SNV 0.643 4 24 hm5C_associated_SNPs_94967 0 0 0 0 2 MFSD2B chr2:24245772 5'GT 24245772 Upstream 36bp
chr9 133553985 133553985 1 + G T UCEC 133553983 + 133553963 133554003 41 CAACACCTTCCTGGGGATCCCAGGTGTGCCCGGGCTAGAGG CAACACCTTCCTGGGGATCCCATGTGTGCCCGGGCTAGAGG < 41bp 0.704236013095913 0.349068570257159 0.89083505 0.20433336 prediction 0.408472026191826 Functional Loss - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133553983 chr9:133553985 nonsynonymous SNV 0.983 3 23 hm5C_associated_SNPs_94971 0 0 0 0 2 PRDM12 chr9:133553916 3'AG 133553916 Downstream 70bp
chr9 133553985 133553985 1 + G T UCEC 133553983 + 133553963 133554003 41 CAACACCTTCCTGGGGATCCCAGGTGTGCCCGGGCTAGAGG CAACACCTTCCTGGGGATCCCATGTGTGCCCGGGCTAGAGG < 41bp 0.704236013095913 0.349068570257159 0.89083505 0.20433336 prediction 0.408472026191826 Functional Loss - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133553983 chr9:133553985 nonsynonymous SNV 0.983 3 23 hm5C_associated_SNPs_94971 0 0 0 0 2 PRDM12 chr9:133554027 5'GT 133554027 Upstream 43bp
chr1 100752731 100752731 1 + C T UCEC 100752729 + 100752709 100752749 41 GTTACACTCCATACGCAAACCGCGATACATTTTGCTGAACA GTTACACTCCATACGCAAACCGTGATACATTTTGCTGAACA < 41bp 0.870116643073692 0.665881914147984 0.26525342 0.115047574 prediction 0.408469457851416 Functional Loss - RTCA ENSG00000137996 CDS Human protein_coding chr1:100752729 chr1:100752731 nonsynonymous SNV 0.883 3 23 hm5C_associated_SNPs_94972 0 0 1 0 2 RTCA chr1:100752655 3'AG 100752655 Downstream 77bp
chr1 100752731 100752731 1 + C T UCEC 100752729 + 100752709 100752749 41 GTTACACTCCATACGCAAACCGCGATACATTTTGCTGAACA GTTACACTCCATACGCAAACCGTGATACATTTTGCTGAACA < 41bp 0.870116643073692 0.665881914147984 0.26525342 0.115047574 prediction 0.408469457851416 Functional Loss - RTCA ENSG00000137996 CDS Human protein_coding chr1:100752729 chr1:100752731 nonsynonymous SNV 0.883 3 23 hm5C_associated_SNPs_94972 0 0 1 0 2 RTCA chr1:100752759 5'GT 100752759 Upstream 29bp
chr3 138186989 138186989 1 + C T COAD 138186986 + 138186966 138187006 41 CAACCAGCGGGCGGCTGCACCTGCGGCTGGAGTGGCTTTCA CAACCAGCGGGCGGCTGCACCTGTGGCTGGAGTGGCTTTCA < 41bp 0.787770540259898 0.583542586343367 0.69193137 0.41620436 prediction 0.408455907833064 Functional Loss - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138186986 chr3:138186989 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_94980 0 0 0 0 2 ESYT3 chr3:138186947 3'AG 138186947 Downstream 43bp
chr3 138186989 138186989 1 + C T COAD 138186986 + 138186966 138187006 41 CAACCAGCGGGCGGCTGCACCTGCGGCTGGAGTGGCTTTCA CAACCAGCGGGCGGCTGCACCTGTGGCTGGAGTGGCTTTCA < 41bp 0.787770540259898 0.583542586343367 0.69193137 0.41620436 prediction 0.408455907833064 Functional Loss - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138186986 chr3:138186989 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_94980 0 0 0 0 2 ESYT3 chr3:138187036 5'GT 138187036 Upstream 48bp
chr19 39871357 39871357 1 + T C UCEC 39871356 + 39871336 39871376 41 CGGATGGGCCTCCTGAGCCCCTCGGGCATTGGGGGTGTCTC CGGATGGGCCTCCTGAGCCCCCCGGGCATTGGGGGTGTCTC < 41bp 0.825496512040327 0.621268793359489 0.2949893 0.40512443 prediction 0.408455437361677 Functional Loss - SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39871356 chr19:39871357 nonsynonymous SNV 0.800 1 22 hm5C_associated_SNPs_94981 0 0 1 0 1 SAMD4B chr19:39871425 5'GT 39871425 Upstream 69bp
chr2 201645474 201645474 1 + G A rs76535841 201645471 + 201645451 201645491 41 AGAGACATAGCTGAGGACTTCACGGTGAAGAGCCCAGCAAC AGAGACATAGCTGAGGACTTCACAGTGAAGAGCCCAGCAAC < 41bp 0.800012057796147 0.595784624706201 0.9132296 0.7526119 prediction 0.408454866179893 Functional Loss - AOX3P-AOX2P;LOC101927795 ENSG00000230408;ENSG00000243478 ncRNA_exonic Human transcribed_unitary_pseudogene chr2:201645471 chr2:201645474 . . 0 24 hm5C_associated_SNPs_94982 0 0 0 0 1 AOX3P-AOX2P chr2:201645537 5'GT 201645537 Upstream 64bp
chr11 372902 372902 1 + C T SKCM 372899 + 372879 372919 41 TTTGAGGACTGGTGTGGGGGCGCCGTGGGCCACCTGAGGAG TTTGAGGACTGGTGTGGGGGCGCTGTGGGCCACCTGAGGAG < 41bp 0.750076271587268 0.545850026406833 0.73418194 0.5482049 prediction 0.408452490360871 Functional Loss - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:372899 chr11:372902 synonymous SNV . 0 24 hm5C_associated_SNPs_94983 0 0 1 0 2 B4GALNT4 chr11:372852 3'AG 372852 Downstream 51bp
chr11 372902 372902 1 + C T SKCM 372899 + 372879 372919 41 TTTGAGGACTGGTGTGGGGGCGCCGTGGGCCACCTGAGGAG TTTGAGGACTGGTGTGGGGGCGCTGTGGGCCACCTGAGGAG < 41bp 0.750076271587268 0.545850026406833 0.73418194 0.5482049 prediction 0.408452490360871 Functional Loss - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:372899 chr11:372902 synonymous SNV . 0 24 hm5C_associated_SNPs_94983 0 0 1 0 2 B4GALNT4 chr11:372947 5'GT 372947 Upstream 46bp
chrX 9912855 9912855 1 + G A MESO 9912852 + 9912832 9912872 41 TCCGGATGTTCATTGGAGACCTGGACAAAGTGGTGAACCTC TCCGGATGTTCATTGGAGACCTGAACAAAGTGGTGAACCTC < 41bp 0.704226044060178 0.46052691096386 0.32326433 0.2774554 prediction 0.408452088120356 Functional Loss - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9912852 chrX:9912855 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_94984 0 0 0 0 1 SHROOM2 chrX:9912953 5'GT 9912953 Upstream 99bp
chr7 87022374 87022374 1 + G T UCEC 87022372 + 87022352 87022392 41 TATGGATTTTTCTACCATATCAGAGATGACAGGTGAGGCTT TATGGATTTTTCTACCATATCATAGATGACAGGTGAGGCTT < 41bp 0.704223356702874 0.365171366935039 0.9093567 0.27833188 prediction 0.408446713405747 Functional Loss - CROT ENSG00000005469 CDS Human protein_coding chr7:87022372 chr7:87022374 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_94988 0 0 0 0 1 CROT chr7:87022383 5'GT 87022383 Upstream 10bp
chr15 77750761 77750761 1 + G A BLCA 77750758 + 77750738 77750778 41 CCTTTCAGAGAGATGGAAAACTTGATGACTAGCTCCACCCT CCTTTCAGAGAGATGGAAAACTTAATGACTAGCTCCACCCT < 41bp 0.788460161696298 0.584237835192617 0.34310168 0.39832222 prediction 0.408444653007361 Functional Loss - HMG20A ENSG00000140382 CDS Human protein_coding chr15:77750758 chr15:77750761 synonymous SNV . 0 24 hm5C_associated_SNPs_94989 0 0 1 0 2 HMG20A chr15:77750746 3'AG 77750746 Downstream 16bp
chr15 77750761 77750761 1 + G A BLCA 77750758 + 77750738 77750778 41 CCTTTCAGAGAGATGGAAAACTTGATGACTAGCTCCACCCT CCTTTCAGAGAGATGGAAAACTTAATGACTAGCTCCACCCT < 41bp 0.788460161696298 0.584237835192617 0.34310168 0.39832222 prediction 0.408444653007361 Functional Loss - HMG20A ENSG00000140382 CDS Human protein_coding chr15:77750758 chr15:77750761 synonymous SNV . 0 24 hm5C_associated_SNPs_94989 0 0 1 0 2 HMG20A chr15:77750838 5'GT 77750838 Upstream 78bp
chr4 40154465 40154465 1 + G A rs113404449 40154462 + 40154442 40154482 41 CGGGGAGAGGAAACCACAGCCAGGGAGGAGTTGCTCGCATC CGGGGAGAGGAAACCACAGCCAGAGAGGAGTTGCTCGCATC < 41bp 0.776000306581842 0.5717811173644 0.9229566 0.8975816 prediction 0.408438378434886 Functional Loss - N4BP2 ENSG00000078177 CDS Human protein_coding chr4:40154462 chr4:40154465 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_94991 0 0 1 0 2 N4BP2 chr4:40154400 3'AG 40154400 Downstream 66bp
chr4 40154465 40154465 1 + G A rs113404449 40154462 + 40154442 40154482 41 CGGGGAGAGGAAACCACAGCCAGGGAGGAGTTGCTCGCATC CGGGGAGAGGAAACCACAGCCAGAGAGGAGTTGCTCGCATC < 41bp 0.776000306581842 0.5717811173644 0.9229566 0.8975816 prediction 0.408438378434886 Functional Loss - N4BP2 ENSG00000078177 CDS Human protein_coding chr4:40154462 chr4:40154465 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_94991 0 0 1 0 2 N4BP2 chr4:40154523 5'GT 40154523 Upstream 59bp
chr10 26998684 26998684 1 + C T BLCA 26998681 + 26998661 26998701 41 TGGCCCGAGCATGCAATATTCATCATAACAACTCCCGGTGA TGGCCCGAGCATGCAATATTCATTATAACAACTCCCGGTGA < 41bp 0.744119662802461 0.539904099833056 0.07585642 0.11797184 prediction 0.408431125938811 Functional Loss - PDSS1 ENSG00000148459 CDS Human protein_coding chr10:26998681 chr10:26998684 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_94994 0 0 1 0 1 PDSS1 chr10:26998697 5'GT 26998697 Upstream 14bp
chr19 8464794 8464794 1 + C T STAD 8464792 + 8464772 8464812 41 GGGCAAGAGCAACCTGCTGTCGCGCTTCACCCGCAACGAGT GGGCAAGAGCAACCTGCTGTCGTGCTTCACCCGCAACGAGT < 41bp 0.841183528314857 0.636968141961853 0.4515135 0.53135306 prediction 0.408430772706009 Functional Loss - RAB11B ENSG00000185236 CDS Human protein_coding chr19:8464792 chr19:8464794 nonsynonymous SNV 0.927 5 23 hm5C_associated_SNPs_94995 0 0 1 0 1 RAB11B chr19:8464747 3'AG 8464747 Downstream 48bp
chr10 127436147 127436147 1 + C T UCEC 127436145 + 127436125 127436165 41 AGCGCTAAGGTCATTGGGAACACGAGACATACACCCAGCTG AGCGCTAAGGTCATTGGGAACATGAGACATACACCCAGCTG < 41bp 0.86450427092153 0.660291973081301 0.4984829 0.4391842 prediction 0.408424595680459 Functional Loss - EDRF1 ENSG00000107938 CDS Human protein_coding chr10:127436145 chr10:127436147 stopgain 0.998 1 23 hm5C_associated_SNPs_94996 0 0 1 0 1 EDRF1 chr10:127436105 3'AG 127436105 Downstream 43bp
chr19 58982146 58982146 1 + G A rs61731803 58982143 + 58982123 58982163 41 AGATGTTTCTGGAGAATGGCCACGAGCTTTCCCAGATACCC AGATGTTTCTGGAGAATGGCCACAAGCTTTCCCAGATACCC < 41bp 0.704211295208291 0.455848603821882 0.24333557 0.14342827 prediction 0.408422590416583 Functional Loss - ZNF324 ENSG00000083812 CDS Human protein_coding chr19:58982143 chr19:58982146 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_94997 0 0 0 0 1 ZNF324 chr19:58982098 3'AG 58982098 Downstream 49bp
chr1 41007379 41007379 1 + C T SKCM 41007377 + 41007357 41007397 41 AGCGAATCCACACGAGAGCTCTCCAGGTGAGTGAGAGAAAT AGCGAATCCACACGAGAGCTCTTCAGGTGAGTGAGAGAAAT < 41bp 0.860863104970076 0.656652251258226 0.9184491 0.46035168 prediction 0.408421707423698 Functional Loss - ZNF684 ENSG00000117010 CDS Human protein_coding chr1:41007377 chr1:41007379 nonsynonymous SNV 0.575 0 23 hm5C_associated_SNPs_94998 0 0 0 0 2 ZNF684 chr1:41007287 3'AG 41007287 Downstream 93bp
chr1 41007379 41007379 1 + C T SKCM 41007377 + 41007357 41007397 41 AGCGAATCCACACGAGAGCTCTCCAGGTGAGTGAGAGAAAT AGCGAATCCACACGAGAGCTCTTCAGGTGAGTGAGAGAAAT < 41bp 0.860863104970076 0.656652251258226 0.9184491 0.46035168 prediction 0.408421707423698 Functional Loss - ZNF684 ENSG00000117010 CDS Human protein_coding chr1:41007377 chr1:41007379 nonsynonymous SNV 0.575 0 23 hm5C_associated_SNPs_94998 0 0 0 0 2 ZNF684 chr1:41007382 5'GT 41007382 Upstream 4bp
chr2 204736138 204736138 1 + G A COAD 204736135 + 204736115 204736155 41 CCAGATTCTGACTTCCTCCTCTGGATCCTTGCAGCAGTTAG CCAGATTCTGACTTCCTCCTCTGAATCCTTGCAGCAGTTAG < 41bp 0.792300869373353 0.588095165853532 0.0983291 0.07325262 prediction 0.408411407039641 Functional Loss - CTLA4 ENSG00000163599 CDS Human protein_coding chr2:204736135 chr2:204736138 stopgain 0.999 0 24 hm5C_associated_SNPs_95002 0 0 0 0 2 CTLA4 chr2:204736101 3'AG 204736101 Downstream 38bp
chr2 204736138 204736138 1 + G A COAD 204736135 + 204736115 204736155 41 CCAGATTCTGACTTCCTCCTCTGGATCCTTGCAGCAGTTAG CCAGATTCTGACTTCCTCCTCTGAATCCTTGCAGCAGTTAG < 41bp 0.792300869373353 0.588095165853532 0.0983291 0.07325262 prediction 0.408411407039641 Functional Loss - CTLA4 ENSG00000163599 CDS Human protein_coding chr2:204736135 chr2:204736138 stopgain 0.999 0 24 hm5C_associated_SNPs_95002 0 0 0 0 2 CTLA4 chr2:204736210 5'GT 204736210 Upstream 73bp
chr16 1391337 1391337 1 + C T BLCA 1391335 + 1391315 1391355 41 ATGCTGGGCATCCTGCCTGCCTCGGACGCCACGCGGGAGCC ATGCTGGGCATCCTGCCTGCCTTGGACGCCACGCGGGAGCC < 41bp 0.704205140261114 0.427957476423841 0.09359342 0.019204348 prediction 0.408410280522229 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1391335 chr16:1391337 nonsynonymous SNV 0.431 1 23 hm5C_associated_SNPs_95003 0 0 0 0 1 BAIAP3 chr16:1391295 3'AG 1391295 Downstream 43bp
chr17 72745117 72745117 1 + C T rs376568959 72745115 + 72745095 72745135 41 AGTACATCCGGCTGGTGGAGCCCGGCTCGCCGGCCGAGAAG AGTACATCCGGCTGGTGGAGCCTGGCTCGCCGGCCGAGAAG < 41bp 0.774157359417236 0.569956312299147 0.7446245 0.543575 prediction 0.408402094236176 Functional Loss - SLC9A3R1 ENSG00000109062 CDS Human protein_coding chr17:72745115 chr17:72745117 synonymous SNV . 0 23 hm5C_associated_SNPs_95008 0 0 1 0 1 SLC9A3R1 chr17:72745043 3'AG 72745043 Downstream 75bp
chr5 74647329 74647329 1 + G A PRAD 74647326 + 74647306 74647346 41 TGGTTGGTAACTCCTCCTTACTCGATACTTCATCAGTACTG TGGTTGGTAACTCCTCCTTACTCAATACTTCATCAGTACTG < 41bp 0.704198364584301 0.475477186361168 0.88572735 0.44800955 prediction 0.408396729168601 Functional Loss - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74647326 chr5:74647329 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_95013 0 0 1 0 2 HMGCR chr5:74647249 3'AG 74647249 Downstream 81bp
chr5 74647329 74647329 1 + G A PRAD 74647326 + 74647306 74647346 41 TGGTTGGTAACTCCTCCTTACTCGATACTTCATCAGTACTG TGGTTGGTAACTCCTCCTTACTCAATACTTCATCAGTACTG < 41bp 0.704198364584301 0.475477186361168 0.88572735 0.44800955 prediction 0.408396729168601 Functional Loss - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74647326 chr5:74647329 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_95013 0 0 1 0 2 HMGCR chr5:74647427 5'GT 74647427 Upstream 99bp
chr15 28901099 28901099 1 + T C rs200595789 28901098 + 28901078 28901118 41 TCACCATGACTCGCATCACCCTGAAGGGCAAAATCACCGTG TCACCATGACTCGCATCACCCCGAAGGGCAAAATCACCGTG < 41bp 0.824566377448428 0.620370264352686 0.19786215 0.20285097 prediction 0.408392226191483 Functional Loss - HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28901098 chr15:28901099 . . 0 22 hm5C_associated_SNPs_95014 0 0 0 0 1 HERC2P9 chr15:28901172 5'GT 28901172 Upstream 74bp
chr1 159779891 159779891 1 + A T ESCA 159779889 + 159779869 159779909 41 TCTCCCTGCTCCCAGGTTCTCAAGTCTTGTTCACTCCCGCC TCTCCCTGCTCCCAGGTTCTCATGTCTTGTTCACTCCCGCC < 41bp 0.704193836305944 0.498034392698803 0.40347576 0.22026446 prediction 0.408387672611888 Functional Loss - FCRL6 ENSG00000181036 CDS Human protein_coding chr1:159779889 chr1:159779891 nonsynonymous SNV 0.072 0 23 hm5C_associated_SNPs_95015 0 0 0 0 1 FCRL6 chr1:159779884 3'AG 159779884 Downstream 8bp
chr19 1251879 1251879 1 + C T BLCA 1251877 + 1251857 1251897 41 AACAGTCCGTGATGCAAGCTCTCGAGAGTCTCACGGAGACG AACAGTCCGTGATGCAAGCTCTTGAGAGTCTCACGGAGACG < 41bp 0.862152713896671 0.657959245466688 0.84876084 0.28895622 prediction 0.408386936859966 Functional Loss - MIDN ENSG00000167470 CDS Human protein_coding chr19:1251877 chr19:1251879 synonymous SNV . 0 23 hm5C_associated_SNPs_95016 0 0 1 0 2 MIDN chr19:1251838 3'AG 1251838 Downstream 42bp
chr19 1251879 1251879 1 + C T BLCA 1251877 + 1251857 1251897 41 AACAGTCCGTGATGCAAGCTCTCGAGAGTCTCACGGAGACG AACAGTCCGTGATGCAAGCTCTTGAGAGTCTCACGGAGACG < 41bp 0.862152713896671 0.657959245466688 0.84876084 0.28895622 prediction 0.408386936859966 Functional Loss - MIDN ENSG00000167470 CDS Human protein_coding chr19:1251877 chr19:1251879 synonymous SNV . 0 23 hm5C_associated_SNPs_95016 0 0 1 0 2 MIDN chr19:1251900 5'GT 1251900 Upstream 22bp
chr11 118403657 118403657 1 + C T UCEC 118403654 + 118403634 118403674 41 AAGCCAGAGATTGCCCAAGTCGGCGCCAAGTACCAGGAAGC AAGCCAGAGATTGCCCAAGTCGGTGCCAAGTACCAGGAAGC < 41bp 0.712762065315018 0.508568610013396 0.8870039 0.4485106 prediction 0.408386910603245 Functional Loss - TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118403654 chr11:118403657 synonymous SNV . 0 24 hm5C_associated_SNPs_95017 0 0 0 0 1 TMEM25 chr11:118403632 3'AG 118403632 Downstream 26bp
chr1 182787719 182787719 1 + C T SKCM 182787716 + 182787696 182787736 41 GATGGGATTCTGGATAAGATCCCCACCTTCCAAGGGCTGAA GATGGGATTCTGGATAAGATCCCTACCTTCCAAGGGCTGAA < 41bp 0.704192892756386 0.476243747544894 0.0493657 0.07736847 prediction 0.408385785512771 Functional Loss - NPL ENSG00000135838 CDS Human protein_coding chr1:182787716 chr1:182787719 synonymous SNV . 0 24 hm5C_associated_SNPs_95021 0 0 1 0 1 NPL chr1:182787676 3'AG 182787676 Downstream 44bp
chr17 52993166 52993166 1 + C T LUSC 52993163 + 52993143 52993183 41 ATGAATGTGCGAGTGATGTCCGCCATATTGATGGAGAATAC ATGAATGTGCGAGTGATGTCCGCTATATTGATGGAGAATAC < 41bp 0.792228907613816 0.58803862670658 0.25070727 0.27607745 prediction 0.408380561814474 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52993163 chr17:52993166 synonymous SNV . 0 24 hm5C_associated_SNPs_95024 0 0 1 2 2 TOM1L1 chr17:52993107 3'AG 52993107 Downstream 60bp
chr17 52993166 52993166 1 + C T LUSC 52993163 + 52993143 52993183 41 ATGAATGTGCGAGTGATGTCCGCCATATTGATGGAGAATAC ATGAATGTGCGAGTGATGTCCGCTATATTGATGGAGAATAC < 41bp 0.792228907613816 0.58803862670658 0.25070727 0.27607745 prediction 0.408380561814474 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52993163 chr17:52993166 synonymous SNV . 0 24 hm5C_associated_SNPs_95024 0 0 1 2 2 TOM1L1 chr17:52993223 5'GT 52993223 Upstream 58bp
chr16 56871556 56871556 1 + C T COAD 56871553 + 56871533 56871573 41 TACTGGAGCTGATGAACAAACTGCTGAGCCCTGTCGTCCCC TACTGGAGCTGATGAACAAACTGTTGAGCCCTGTCGTCCCC < 41bp 0.777362103624958 0.573179047376344 0.113327 0.10264528 prediction 0.408366112497228 Functional Loss - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56871553 chr16:56871556 synonymous SNV . 0 24 hm5C_associated_SNPs_95027 0 0 1 0 2 NUP93 chr16:56871520 3'AG 56871520 Downstream 37bp
chr16 56871556 56871556 1 + C T COAD 56871553 + 56871533 56871573 41 TACTGGAGCTGATGAACAAACTGCTGAGCCCTGTCGTCCCC TACTGGAGCTGATGAACAAACTGTTGAGCCCTGTCGTCCCC < 41bp 0.777362103624958 0.573179047376344 0.113327 0.10264528 prediction 0.408366112497228 Functional Loss - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56871553 chr16:56871556 synonymous SNV . 0 24 hm5C_associated_SNPs_95027 0 0 1 0 2 NUP93 chr16:56871638 5'GT 56871638 Upstream 83bp
chr12 105150766 105150766 1 + C T UCEC 105150763 + 105150743 105150783 41 CTGCTGTCCTGCACCAGATGCGGCGGGACCAGGTGACAGAC CTGCTGTCCTGCACCAGATGCGGTGGGACCAGGTGACAGAC < 41bp 0.718836679926667 0.51465421717186 0.87032163 0.85004425 prediction 0.408364925509615 Functional Loss - CHST11 ENSG00000171310 CDS Human protein_coding chr12:105150763 chr12:105150766 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_95028 0 0 1 0 1 CHST11 chr12:105150727 3'AG 105150727 Downstream 40bp
chr3 133483070 133483070 1 + C T rs113679330 133483067 + 133483047 133483087 41 AGCTTGGATGGAGGGTTTGTCTACATAGCGGGCAAGTGTGG AGCTTGGATGGAGGGTTTGTCTATATAGCGGGCAAGTGTGG < 41bp 0.704181475440477 0.478552081099887 0.9106195 0.4704416 prediction 0.408362950880953 Functional Loss - TF ENSG00000091513 CDS Human protein_coding chr3:133483067 chr3:133483070 synonymous SNV . 0 24 hm5C_associated_SNPs_95029 0 0 1 0 2 TF chr3:133483026 3'AG 133483026 Downstream 45bp
chr3 133483070 133483070 1 + C T rs113679330 133483067 + 133483047 133483087 41 AGCTTGGATGGAGGGTTTGTCTACATAGCGGGCAAGTGTGG AGCTTGGATGGAGGGTTTGTCTATATAGCGGGCAAGTGTGG < 41bp 0.704181475440477 0.478552081099887 0.9106195 0.4704416 prediction 0.408362950880953 Functional Loss - TF ENSG00000091513 CDS Human protein_coding chr3:133483067 chr3:133483070 synonymous SNV . 0 24 hm5C_associated_SNPs_95029 0 0 1 0 2 TF chr3:133483119 5'GT 133483119 Upstream 50bp
chr7 5342477 5342477 1 + C T HNSC 5342474 + 5342454 5342494 41 TCAGGGCTGACGCTGGGGTCCGCCGTGGCCTACTGCACCTA TCAGGGCTGACGCTGGGGTCCGCTGTGGCCTACTGCACCTA < 41bp 0.704259165809872 0.50008066441085 0.23309365 0.2772601 prediction 0.408357002798043 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5342474 chr7:5342477 synonymous SNV . 0 24 hm5C_associated_SNPs_95030 0 0 1 0 1 SLC29A4 chr7:5342428 3'AG 5342428 Downstream 50bp
chr3 115395384 115395384 1 + G T UCEC 115395380 + 115395360 115395400 41 TGCTGCCACCACCCCTGCCGCAGAGGATGCTGCTGCCAAGG TGCTGCCACCACCCCTGCCGCAGATGATGCTGCTGCCAAGG < 41bp 0.730396212330553 0.526217993989296 0.8261048 0.6656926 prediction 0.408356436682513 Functional Loss - GAP43 ENSG00000172020 CDS Human protein_coding chr3:115395380 chr3:115395384 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_95031 0 0 0 0 1 GAP43 chr3:115395457 5'GT 115395457 Upstream 74bp
chr3 39174562 39174562 1 + G T LUAD 39174559 + 39174539 39174579 41 CGAGGCCTTGGACCTCCAGTCTCGGATACTGAAGCGAGTTC CGAGGCCTTGGACCTCCAGTCTCTGATACTGAAGCGAGTTC < 41bp 0.704177660526374 0.309810854459992 0.49731904 0.29364687 prediction 0.408355321052748 Functional Loss - TTC21A ENSG00000168026 CDS Human protein_coding chr3:39174559 chr3:39174562 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_95032 0 0 0 0 1 TTC21A chr3:39174543 3'AG 39174543 Downstream 20bp
chr1 150237047 150237047 1 + G A UCEC 150237044 + 150237024 150237064 41 GTCTTCACCTCAGCACAAGCCACGACTGAGGCATAAATTCC GTCTTCACCTCAGCACAAGCCACAACTGAGGCATAAATTCC < 41bp 0.798700805680967 0.594527643987384 0.07276064 0.04018733 prediction 0.408346323387165 Functional Loss - CA14 ENSG00000118298 CDS Human protein_coding chr1:150237044 chr1:150237047 nonsynonymous SNV 0.475 0 24 hm5C_associated_SNPs_95034 0 0 0 0 1 CA14 chr1:150236993 3'AG 150236993 Downstream 55bp
chr1 66064443 66064443 1 + G A UCEC 66064440 + 66064420 66064460 41 GGGCAAGAGACTGGATGGCCCAGGAATCTGGAGTGACTGGA GGGCAAGAGACTGGATGGCCCAGAAATCTGGAGTGACTGGA < 41bp 0.796161013385933 0.59198804272324 0.6699182 0.24777594 prediction 0.408345941325387 Functional Loss - LEPR ENSG00000116678 CDS Human protein_coding chr1:66064440 chr1:66064443 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_95035 0 0 1 0 1 LEPR chr1:66064487 5'GT 66064487 Upstream 45bp
chr16 19693627 19693627 1 + C T rs117014682 19693624 + 19693604 19693644 41 GACTACACCTGGGAGGACAACAGCGATGAGAAAATCCGCAT GACTACACCTGGGAGGACAACAGTGATGAGAAAATCCGCAT < 41bp 0.765754499991947 0.56158521933636 0.43019837 0.34422505 prediction 0.408338561311175 Functional Loss - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19693624 chr16:19693627 synonymous SNV . 0 24 hm5C_associated_SNPs_95039 0 0 0 0 2 C16orf62 chr16:19693547 3'AG 19693547 Downstream 81bp
chr16 19693627 19693627 1 + C T rs117014682 19693624 + 19693604 19693644 41 GACTACACCTGGGAGGACAACAGCGATGAGAAAATCCGCAT GACTACACCTGGGAGGACAACAGTGATGAGAAAATCCGCAT < 41bp 0.765754499991947 0.56158521933636 0.43019837 0.34422505 prediction 0.408338561311175 Functional Loss - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19693624 chr16:19693627 synonymous SNV . 0 24 hm5C_associated_SNPs_95039 0 0 0 0 2 C16orf62 chr16:19693712 5'GT 19693712 Upstream 86bp
chr17 65041003 65041003 1 + G A SKCM 65041000 + 65040980 65041020 41 CTGCGGGCCCATCACCCTGCCCGGGGGTAACGTACCCACCC CTGCGGGCCCATCACCCTGCCCGAGGGTAACGTACCCACCC < 41bp 0.704166711344555 0.455160413055187 0.92395926 0.3533214 prediction 0.408333422689109 Functional Loss - CACNG1 ENSG00000108878 CDS Human protein_coding chr17:65041000 chr17:65041003 nonsynonymous SNV 0.934 3 24 hm5C_associated_SNPs_95040 0 0 0 0 1 CACNG1 chr17:65041005 5'GT 65041005 Upstream 3bp
chr19 30101396 30101396 1 + C T UCEC 30101393 + 30101373 30101413 41 CCCCGCATGAGCCCGCAGGCCCGCGAGGACCAGCTGCAGCG CCCCGCATGAGCCCGCAGGCCCGTGAGGACCAGCTGCAGCG < 41bp 0.704166032260323 0.496070211863144 0.112445265 0.17328006 prediction 0.408332064520646 Functional Loss - POP4 ENSG00000105171 CDS Human protein_coding chr19:30101393 chr19:30101396 synonymous SNV . 0 24 hm5C_associated_SNPs_95042 0 0 1 0 1 POP4 chr19:30101316 3'AG 30101316 Downstream 81bp
chr8 24259568 24259568 1 + T C LUSC 24259567 + 24259547 24259587 41 CAGTGTGTGGGAACCACCTTCTAGAAGTGGGAGAAGACTGT CAGTGTGTGGGAACCACCTTCCAGAAGTGGGAGAAGACTGT < 41bp 0.704165331713909 0.437606469258367 0.24239391 0.37030292 prediction 0.408330663427819 Functional Loss - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24259567 chr8:24259568 nonsynonymous SNV 0.751 1 22 hm5C_associated_SNPs_95043 0 0 0 0 1 ADAMDEC1 chr8:24259605 5'GT 24259605 Upstream 38bp
chr11 7631561 7631561 1 + G A COAD 7631558 + 7631538 7631578 41 CATCTCTTGAGACCCAGAAGCTCGATCTGATGACTGAAGTG CATCTCTTGAGACCCAGAAGCTCAATCTGATGACTGAAGTG < 41bp 0.704165182781686 0.458011024026753 0.36073405 0.8651613 prediction 0.408330365563373 Functional Loss - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7631558 chr11:7631561 nonsynonymous SNV 0.985 0 24 hm5C_associated_SNPs_95044 0 0 1 0 2 PPFIBP2 chr11:7631522 3'AG 7631522 Downstream 40bp
chr11 7631561 7631561 1 + G A COAD 7631558 + 7631538 7631578 41 CATCTCTTGAGACCCAGAAGCTCGATCTGATGACTGAAGTG CATCTCTTGAGACCCAGAAGCTCAATCTGATGACTGAAGTG < 41bp 0.704165182781686 0.458011024026753 0.36073405 0.8651613 prediction 0.408330365563373 Functional Loss - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7631558 chr11:7631561 nonsynonymous SNV 0.985 0 24 hm5C_associated_SNPs_95044 0 0 1 0 2 PPFIBP2 chr11:7631653 5'GT 7631653 Upstream 93bp
chr4 110885671 110885671 1 + A T STAD 110885667 + 110885647 110885687 41 AGATGGGAATGGTTTATGCCCTAGATCATGACCCTGTGGAA AGATGGGAATGGTTTATGCCCTAGTTCATGACCCTGTGGAA < 41bp 0.704159187434096 0.372615677168732 0.104079306 0.071779996 prediction 0.408318374868193 Functional Loss - EGF ENSG00000138798 CDS Human protein_coding chr4:110885667 chr4:110885671 nonsynonymous SNV 0.727 5 25 hm5C_associated_SNPs_95048 0 0 0 0 1 EGF chr4:110885693 5'GT 110885693 Upstream 23bp
chr8 120118127 120118127 1 + G A LUAD 120118124 + 120118104 120118144 41 AGGGAATCCCTAACCCACTGCAGGATTCGGGGTGGAATGCT AGGGAATCCCTAACCCACTGCAGAATTCGGGGTGGAATGCT < 41bp 0.807580110225714 0.603424694986736 0.8917389 0.8314328 prediction 0.408310830477955 Functional Loss - COLEC10 ENSG00000184374 CDS Human protein_coding chr8:120118124 chr8:120118127 synonymous SNV . 0 24 hm5C_associated_SNPs_95050 0 0 0 0 1 COLEC10 chr8:120118039 3'AG 120118039 Downstream 89bp
chr19 19637067 19637067 1 + C T LUAD 19637065 + 19637045 19637085 41 TAATGAAGTGGAACCGTGAGCGCAGGTAGGGCCCCTGGTGG TAATGAAGTGGAACCGTGAGCGTAGGTAGGGCCCCTGGTGG < 41bp 0.825819813100305 0.621666795175693 0.41165757 0.48436412 prediction 0.408306035849224 Functional Loss - NDUFA13 ENSG00000186010;ENSG00000250067;ENSG00000258674 CDS Human other chr19:19637065 chr19:19637067 synonymous SNV . 0 23 hm5C_associated_SNPs_95051 0 0 1 0 2 NDUFA13 chr19:19636991 3'AG 19636991 Downstream 77bp
chr19 19637067 19637067 1 + C T LUAD 19637065 + 19637045 19637085 41 TAATGAAGTGGAACCGTGAGCGCAGGTAGGGCCCCTGGTGG TAATGAAGTGGAACCGTGAGCGTAGGTAGGGCCCCTGGTGG < 41bp 0.825819813100305 0.621666795175693 0.41165757 0.48436412 prediction 0.408306035849224 Functional Loss - NDUFA13 ENSG00000186010;ENSG00000250067;ENSG00000258674 CDS Human other chr19:19637065 chr19:19637067 synonymous SNV . 0 23 hm5C_associated_SNPs_95051 0 0 1 0 2 NDUFA13 chr19:19637069 5'GT 19637069 Upstream 3bp
chr7 37901739 37901739 1 + G A GBM 37901736 + 37901716 37901756 41 AATTGCAGCAGGTGAAATGGCTCGACCTCAGGTAATACTTT AATTGCAGCAGGTGAAATGGCTCAACCTCAGGTAATACTTT < 41bp 0.791616418876812 0.587467788712323 0.121510595 0.31649715 prediction 0.408297260328977 Functional Loss - NME8 ENSG00000086288 CDS Human protein_coding chr7:37901736 chr7:37901739 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_95053 0 0 0 0 1 NME8 chr7:37901746 5'GT 37901746 Upstream 8bp
chr16 20442358 20442358 1 + G A SKCM 20442355 + 20442335 20442375 41 AAAAGGCATGAAAATCAAGTCTGGATCCATGGGGAAGGCGT AAAAGGCATGAAAATCAAGTCTGAATCCATGGGGAAGGCGT < 41bp 0.815014677118663 0.61087015312601 0.2596863 0.12128243 prediction 0.408289047985306 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20442355 chr16:20442358 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_95056 0 0 0 0 2 ACSM5 chr16:20442315 3'AG 20442315 Downstream 44bp
chr16 20442358 20442358 1 + G A SKCM 20442355 + 20442335 20442375 41 AAAAGGCATGAAAATCAAGTCTGGATCCATGGGGAAGGCGT AAAAGGCATGAAAATCAAGTCTGAATCCATGGGGAAGGCGT < 41bp 0.815014677118663 0.61087015312601 0.2596863 0.12128243 prediction 0.408289047985306 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20442355 chr16:20442358 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_95056 0 0 0 0 2 ACSM5 chr16:20442395 5'GT 20442395 Upstream 38bp
chr19 55593883 55593883 1 + C T UCEC 55593880 + 55593860 55593900 41 TGTGCGGCGGCCGCATCTGACATCGGATGCCGTGGCGCTGC TGTGCGGCGGCCGCATCTGACATTGGATGCCGTGGCGCTGC < 41bp 0.70414299560585 0.493908470273324 0.8858774 0.64279467 prediction 0.4082859912117 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55593880 chr19:55593883 nonsynonymous SNV 0.011 0 24 hm5C_associated_SNPs_95058 0 0 0 0 2 EPS8L1 chr19:55593822 3'AG 55593822 Downstream 62bp
chr19 55593883 55593883 1 + C T UCEC 55593880 + 55593860 55593900 41 TGTGCGGCGGCCGCATCTGACATCGGATGCCGTGGCGCTGC TGTGCGGCGGCCGCATCTGACATTGGATGCCGTGGCGCTGC < 41bp 0.70414299560585 0.493908470273324 0.8858774 0.64279467 prediction 0.4082859912117 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55593880 chr19:55593883 nonsynonymous SNV 0.011 0 24 hm5C_associated_SNPs_95058 0 0 0 0 2 EPS8L1 chr19:55593970 5'GT 55593970 Upstream 88bp
chr21 45706979 45706979 1 + G A UCEC 45706976 + 45706956 45706996 41 TCAGAAGAGGCTCGAGCTGCCGCGCCAGCAGCCCTGACTCC TCAGAAGAGGCTCGAGCTGCCGCACCAGCAGCCCTGACTCC < 41bp 0.704142948526708 0.443726083784805 0.46512228 0.19035077 prediction 0.408285897053416 Functional Loss - AIRE ENSG00000160224 CDS Human protein_coding chr21:45706976 chr21:45706979 synonymous SNV . 0 24 hm5C_associated_SNPs_95059 0 0 0 0 1 AIRE chr21:45707016 5'GT 45707016 Upstream 38bp
chr17 48613941 48613941 1 + C T rs9906412 48613939 + 48613919 48613959 41 TGACGACCTCCGCACTCCGGCGCCAGGTGAAGAACATCGTG TGACGACCTCCGCACTCCGGCGTCAGGTGAAGAACATCGTG < 41bp 0.704142705485971 0.417838539087311 0.31569195 0.38691196 prediction 0.408285410971943 Functional Loss - EPN3 ENSG00000049283 CDS Human protein_coding chr17:48613939 chr17:48613941 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_95060 0 0 0 0 1 EPN3 chr17:48613986 5'GT 48613986 Upstream 46bp
chr8 134232922 134232922 1 + G T HNSC 134232918 + 134232898 134232938 41 TACAACTGCACGTGCATCGACGGCGCGGTGGGCTGCACACC TACAACTGCACGTGCATCGACGGCTCGGTGGGCTGCACACC < 41bp 0.760865326588374 0.556723494791925 0.8289163 0.33565736 prediction 0.408283663592898 Functional Loss - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134232918 chr8:134232922 nonsynonymous SNV 0.029 1 25 hm5C_associated_SNPs_95061 0 0 0 0 1 WISP1 chr8:134232824 3'AG 134232824 Downstream 99bp
chr1 78392157 78392157 1 + G T UCEC 78392154 + 78392134 78392174 41 TGTCAAATCATATAAAACATCTGGAAAAATGAAAAAGAATT TGTCAAATCATATAAAACATCTGTAAAAATGAAAAAGAATT < 41bp 0.704136635065904 0.344752203072317 0.04593593 0.043851525 prediction 0.408273270131807 Functional Loss - NEXN ENSG00000162614 CDS Human protein_coding chr1:78392154 chr1:78392157 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_95062 0 0 0 0 1 NEXN chr1:78392099 3'AG 78392099 Downstream 59bp
chr2 234676545 234676545 1 + G A SKCM 234676542 + 234676522 234676562 41 CCATCGAATCTTGCGAACAACACGATACTTGTTAAGTGGCT CCATCGAATCTTGCGAACAACACAATACTTGTTAAGTGGCT < 41bp 0.813086041070633 0.608955752476873 0.16594312 0.20354056 prediction 0.40826057718752 Functional Loss - UGT1A1;UGT1A10;UGT1A3;UGT1A4;UGT1A5;UGT1A6;UGT1A7;UGT1A8;UGT1A9 ENSG00000167165;ENSG00000240224;ENSG00000241119;ENSG00000241635;ENSG00000242366;ENSG00000242515;ENSG00000243135;ENSG00000244122;ENSG00000244474 CDS Human other chr2:234676542 chr2:234676545 synonymous SNV . 0 24 hm5C_associated_SNPs_95069 0 0 0 0 2 UGT1A1;UGT1A10;UGT1A3;UGT1A4;UGT1A5;UGT1A6;UGT1A7;UGT1A8;UGT1A9 chr2:234676495 3'AG 234676495 Downstream 51bp
chr2 234676545 234676545 1 + G A SKCM 234676542 + 234676522 234676562 41 CCATCGAATCTTGCGAACAACACGATACTTGTTAAGTGGCT CCATCGAATCTTGCGAACAACACAATACTTGTTAAGTGGCT < 41bp 0.813086041070633 0.608955752476873 0.16594312 0.20354056 prediction 0.40826057718752 Functional Loss - UGT1A1;UGT1A10;UGT1A3;UGT1A4;UGT1A5;UGT1A6;UGT1A7;UGT1A8;UGT1A9 ENSG00000167165;ENSG00000240224;ENSG00000241119;ENSG00000241635;ENSG00000242366;ENSG00000242515;ENSG00000243135;ENSG00000244122;ENSG00000244474 CDS Human other chr2:234676542 chr2:234676545 synonymous SNV . 0 24 hm5C_associated_SNPs_95069 0 0 0 0 2 UGT1A1;UGT1A10;UGT1A3;UGT1A4;UGT1A5;UGT1A6;UGT1A7;UGT1A8;UGT1A9 chr2:234676582 5'GT 234676582 Upstream 38bp
chr4 113333032 113333032 1 + C T UCEC 113333029 + 113333009 113333049 41 TCGGGACTGTGCGGCTGCGGCGGCTATTGTGTTCTTGGTGG TCGGGACTGTGCGGCTGCGGCGGTTATTGTGTTCTTGGTGG < 41bp 0.708074764664359 0.503946595113718 0.8737891 0.84875166 prediction 0.408256339101283 Functional Loss - ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113333029 chr4:113333032 nonsynonymous SNV 0.014 4 24 hm5C_associated_SNPs_95071 0 0 0 0 1 ALPK1 chr4:113332983 3'AG 113332983 Downstream 50bp
chr15 49620172 49620172 1 + G T LUSC 49620169 + 49620149 49620189 41 GAAGTTTGGGGCTCAAGGGTCACGACTTACTGGAGCAGGAT GAAGTTTGGGGCTCAAGGGTCACTACTTACTGGAGCAGGAT < 41bp 0.704126655535328 0.321884880103317 0.083283156 0.051400542 prediction 0.408253311070655 Functional Loss - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49620169 chr15:49620172 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_95072 0 0 1 0 1 GALK2 chr15:49620149 3'AG 49620149 Downstream 24bp
chr20 42893133 42893133 1 + G A LUSC 42893130 + 42893110 42893150 41 TGAGCTACCTGAAGAAGATCCTCGGGGAACTGGCCATGGTG TGAGCTACCTGAAGAAGATCCTCAGGGAACTGGCCATGGTG < 41bp 0.704126283272548 0.450911837011822 0.562687 0.20874938 prediction 0.408252566545097 Functional Loss - GDAP1L1 ENSG00000124194 CDS Human protein_coding chr20:42893130 chr20:42893133 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_95073 0 0 0 0 1 GDAP1L1 chr20:42893085 3'AG 42893085 Downstream 49bp
chr13 115067441 115067441 1 + G T COAD 115067438 + 115067418 115067458 41 CGGGGGAGGCCATGGAGAGACTGGGAAGAGCGCAGAGGTGT CGGGGGAGGCCATGGAGAGACTGTGAAGAGCGCAGAGGTGT < 41bp 0.936708918845585 0.732585621894219 0.5322893 0.17826143 prediction 0.408246593902733 Functional Loss - UPF3A ENSG00000169062 CDS Human protein_coding chr13:115067438 chr13:115067441 stopgain 0.001 0 24 hm5C_associated_SNPs_95076 0 0 0 0 1 UPF3A chr13:115067500 5'GT 115067500 Upstream 60bp
chr5 65339026 65339026 1 + G A rs189776329 65339023 + 65339003 65339043 41 GATGAAAGGGAGGCACCTCCCAGGGTGAGTCTGTTCTTTAT GATGAAAGGGAGGCACCTCCCAGAGTGAGTCTGTTCTTTAT < 41bp 0.755898366697507 0.551777444818193 0.9161811 0.8302181 prediction 0.408241843758627 Functional Loss - ERBIN ENSG00000112851 CDS Human protein_coding chr5:65339023 chr5:65339026 synonymous SNV . 0 24 hm5C_associated_SNPs_95078 0 0 0 0 1 ERBIN chr5:65339026 3'AG 65339026 Downstream 1bp
chr19 48244222 48244222 1 + G A COAD 48244219 + 48244199 48244239 41 CACTGGACGAGATGCTGACGCACGACATCGCCAAGCTCATG CACTGGACGAGATGCTGACGCACAACATCGCCAAGCTCATG < 41bp 0.81914734103063 0.615027609365878 0.04282573 0.023269713 prediction 0.408239463329505 Functional Loss - EHD2 ENSG00000024422 CDS Human protein_coding chr19:48244219 chr19:48244222 nonsynonymous SNV 0.181 4 24 hm5C_associated_SNPs_95079 0 0 0 0 1 EHD2 chr19:48244138 3'AG 48244138 Downstream 85bp
chr11 125482606 125482606 1 + G A BLCA 125482603 + 125482583 125482623 41 AGTCGTCCAGACAAGAAGAGCAAGAAGCAACAGGATTCCAC AGTCGTCCAGACAAGAAGAGCAAAAAGCAACAGGATTCCAC < 41bp 0.70411821243874 0.470757260627425 0.24547553 0.32154316 prediction 0.40823642487748 Functional Loss - STT3A ENSG00000134910 CDS Human protein_coding chr11:125482603 chr11:125482606 synonymous SNV . 0 24 hm5C_associated_SNPs_95081 0 0 1 0 1 STT3A chr11:125482642 5'GT 125482642 Upstream 37bp
chr4 144445600 144445600 1 + G A UCEC 144445597 + 144445577 144445617 41 CAAAGCAACCAATGTTTGCACTCGATTTGAAGACTCTCCAT CAAAGCAACCAATGTTTGCACTCAATTTGAAGACTCTCCAT < 41bp 0.789979152492384 0.585861986274773 0.32415998 0.07425547 prediction 0.408234332435223 Functional Loss - SMARCA5 ENSG00000153147 CDS Human protein_coding chr4:144445597 chr4:144445600 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_95082 0 0 1 0 2 SMARCA5 chr4:144445520 3'AG 144445520 Downstream 81bp
chr4 144445600 144445600 1 + G A UCEC 144445597 + 144445577 144445617 41 CAAAGCAACCAATGTTTGCACTCGATTTGAAGACTCTCCAT CAAAGCAACCAATGTTTGCACTCAATTTGAAGACTCTCCAT < 41bp 0.789979152492384 0.585861986274773 0.32415998 0.07425547 prediction 0.408234332435223 Functional Loss - SMARCA5 ENSG00000153147 CDS Human protein_coding chr4:144445597 chr4:144445600 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_95082 0 0 1 0 2 SMARCA5 chr4:144445620 5'GT 144445620 Upstream 21bp
chr14 22192489 22192489 1 + G T HNSC 22192486 + 22192466 22192506 41 GGCTTTGAAGCTGAATTTAACAAGAGCCAAACCTCCTTCCA GGCTTTGAAGCTGAATTTAACAATAGCCAAACCTCCTTCCA < 41bp 0.704115619830874 0.337572519379155 0.79976976 0.13101226 prediction 0.408231239661748 Functional Loss - OR4E1;LINC02332 ENSG00000211777 CDS Human TR_V_gene chr14:22192486 chr14:22192489 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_95085 0 0 0 0 1 OR4E1;LINC02332 chr14:22192545 5'GT 22192545 Upstream 57bp
chr4 43032470 43032470 1 + A T LUAD 43032468 + 43032448 43032488 41 GGAGCAAGATGTCCATGTTTCGAAACTGCTTCACAGACTCT GGAGCAAGATGTCCATGTTTCGTAACTGCTTCACAGACTCT < 41bp 0.728194545770692 0.524080542284665 0.5709732 0.26880014 prediction 0.408228006972054 Functional Loss - GRXCR1 ENSG00000215203 CDS Human protein_coding chr4:43032468 chr4:43032470 synonymous SNV . 0 23 hm5C_associated_SNPs_95086 0 0 0 0 1 GRXCR1 chr4:43032378 3'AG 43032378 Downstream 93bp
chr22 30163512 30163512 1 + C T SKCM 30163510 + 30163490 30163530 41 GCCTTCGATCAAGGCGCGGACGCTATCTACGACCACATCAA GCCTTCGATCAAGGCGCGGACGTTATCTACGACCACATCAA < 41bp 0.704113661952457 0.432318721704293 0.3101223 0.39012235 prediction 0.408227323904913 Functional Loss - UQCR10 ENSG00000184076 CDS Human protein_coding chr22:30163510 chr22:30163512 nonsynonymous SNV 0.968 2 23 hm5C_associated_SNPs_95087 0 0 1 0 2 UQCR10 chr22:30163537 5'GT 30163537 Upstream 26bp
chr22 30163512 30163512 1 + C T SKCM 30163510 + 30163490 30163530 41 GCCTTCGATCAAGGCGCGGACGCTATCTACGACCACATCAA GCCTTCGATCAAGGCGCGGACGTTATCTACGACCACATCAA < 41bp 0.704113661952457 0.432318721704293 0.3101223 0.39012235 prediction 0.408227323904913 Functional Loss - UQCR10 ENSG00000184076 CDS Human protein_coding chr22:30163510 chr22:30163512 nonsynonymous SNV 0.968 2 23 hm5C_associated_SNPs_95087 0 0 1 0 2 UQCR10 chr22:30163596 5'GT 30163596 Upstream 85bp
chr14 68114830 68114830 1 + A C LUAD 68114829 + 68114809 68114849 41 CCCTACACTGGCTCCAGCCACAGGAACTCCTGTTGTCGGGG CCCTACACTGGCTCCAGCCACCGGAACTCCTGTTGTCGGGG < 41bp 0.849931302729264 0.645820173701452 0.72740597 0.37809545 prediction 0.408222258055623 Functional Loss - ARG2 ENSG00000081181 CDS Human protein_coding chr14:68114829 chr14:68114830 synonymous SNV . 0 22 hm5C_associated_SNPs_95089 0 0 1 0 2 ARG2 chr14:68114764 3'AG 68114764 Downstream 67bp
chr14 68114830 68114830 1 + A C LUAD 68114829 + 68114809 68114849 41 CCCTACACTGGCTCCAGCCACAGGAACTCCTGTTGTCGGGG CCCTACACTGGCTCCAGCCACCGGAACTCCTGTTGTCGGGG < 41bp 0.849931302729264 0.645820173701452 0.72740597 0.37809545 prediction 0.408222258055623 Functional Loss - ARG2 ENSG00000081181 CDS Human protein_coding chr14:68114829 chr14:68114830 synonymous SNV . 0 22 hm5C_associated_SNPs_95089 0 0 1 0 2 ARG2 chr14:68114900 5'GT 68114900 Upstream 71bp
chr3 130717163 130717163 1 + G A CESC 130717160 + 130717140 130717180 41 ACGAGACAATGTGATTACACCTCGAGACACAACAATGACCT ACGAGACAATGTGATTACACCTCAAGACACAACAATGACCT < 41bp 0.712499698797642 0.508389071474485 0.5687175 0.05893293 prediction 0.408221254646314 Functional Loss - ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130717160 chr3:130717163 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_95090 0 0 1 0 2 ATP2C1 chr3:130717138 3'AG 130717138 Downstream 26bp
chr3 130717163 130717163 1 + G A CESC 130717160 + 130717140 130717180 41 ACGAGACAATGTGATTACACCTCGAGACACAACAATGACCT ACGAGACAATGTGATTACACCTCAAGACACAACAATGACCT < 41bp 0.712499698797642 0.508389071474485 0.5687175 0.05893293 prediction 0.408221254646314 Functional Loss - ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130717160 chr3:130717163 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_95090 0 0 1 0 2 ATP2C1 chr3:130717233 5'GT 130717233 Upstream 71bp
chrX 17653713 17653713 1 + G T UCEC 17653710 + 17653690 17653730 41 GCTCTGGCCTGCTGCATGCCCAAGAATGCAGGTATTTGGGG GCTCTGGCCTGCTGCATGCCCAATAATGCAGGTATTTGGGG < 41bp 0.70411028012986 0.330956196725715 0.39282885 0.2664926 prediction 0.40822056025972 Functional Loss - NHS ENSG00000188158 CDS Human protein_coding chrX:17653710 chrX:17653713 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_95091 0 0 0 0 1 NHS chrX:17653720 5'GT 17653720 Upstream 8bp
chr16 50756540 50756540 1 + G C rs2066845 50756536 + 50756516 50756556 41 TCTTTTGGCCTTTTCAGATTCTGGGGCAACAGAGTGGGTGA TCTTTTGGCCTTTTCAGATTCTGGCGCAACAGAGTGGGTGA < 41bp 0.876260082252273 0.672149853556098 0.9017616 0.5627723 prediction 0.40822045739235 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50756536 chr16:50756540 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_95092 5 1 0 1 2 NOD2 chr16:50756533 3'AG 50756533 Downstream 8bp
chr16 50756540 50756540 1 + G C rs2066845 50756536 + 50756516 50756556 41 TCTTTTGGCCTTTTCAGATTCTGGGGCAACAGAGTGGGTGA TCTTTTGGCCTTTTCAGATTCTGGCGCAACAGAGTGGGTGA < 41bp 0.876260082252273 0.672149853556098 0.9017616 0.5627723 prediction 0.40822045739235 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50756536 chr16:50756540 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_95092 5 1 0 1 2 NOD2 chr16:50756616 5'GT 50756616 Upstream 77bp
chr1 111889599 111889599 1 + G A UCEC 111889596 + 111889576 111889616 41 CTTTTTCCTCACTTCCATCCCCCGAATTTGATTGGGAACAA CTTTTTCCTCACTTCCATCCCCCAAATTTGATTGGGAACAA < 41bp 0.803563153137216 0.599456229584821 0.10613799 0.20036086 prediction 0.40821384710479 Functional Loss - PIFO ENSG00000173947 CDS Human protein_coding chr1:111889596 chr1:111889599 synonymous SNV . 0 24 hm5C_associated_SNPs_95093 0 0 0 0 2 PIFO chr1:111889532 3'AG 111889532 Downstream 68bp
chr1 111889599 111889599 1 + G A UCEC 111889596 + 111889576 111889616 41 CTTTTTCCTCACTTCCATCCCCCGAATTTGATTGGGAACAA CTTTTTCCTCACTTCCATCCCCCAAATTTGATTGGGAACAA < 41bp 0.803563153137216 0.599456229584821 0.10613799 0.20036086 prediction 0.40821384710479 Functional Loss - PIFO ENSG00000173947 CDS Human protein_coding chr1:111889596 chr1:111889599 synonymous SNV . 0 24 hm5C_associated_SNPs_95093 0 0 0 0 2 PIFO chr1:111889671 5'GT 111889671 Upstream 73bp
chr21 38114103 38114103 1 + C T LUSC 38114100 + 38114080 38114120 41 GTGTGGGTGCAGAGCTACGCCACCGTGGTGCACAACAGCCG GTGTGGGTGCAGAGCTACGCCACTGTGGTGCACAACAGCCG < 41bp 0.746159372601481 0.542053803941048 0.13816118 0.11537865 prediction 0.408211137320865 Functional Loss - SIM2 ENSG00000159263 CDS Human protein_coding chr21:38114100 chr21:38114103 synonymous SNV . 0 24 hm5C_associated_SNPs_95095 0 0 0 0 1 SIM2 chr21:38114165 5'GT 38114165 Upstream 63bp
chr9 71998593 71998593 1 + G A rs369558547 71998590 + 71998570 71998610 41 CCTGCCACACATCTACGGAGCTCGAATCAAAGGTGTGGAAG CCTGCCACACATCTACGGAGCTCAAATCAAAGGTGTGGAAG < 41bp 0.821821907306541 0.617720053046553 0.08510128 0.052378953 prediction 0.408203708519975 Functional Loss - FAM189A2 ENSG00000135063 CDS Human protein_coding chr9:71998590 chr9:71998593 nonsynonymous SNV 0.904 3 24 hm5C_associated_SNPs_95097 0 0 0 0 2 FAM189A2 chr9:71998546 3'AG 71998546 Downstream 48bp
chr9 71998593 71998593 1 + G A rs369558547 71998590 + 71998570 71998610 41 CCTGCCACACATCTACGGAGCTCGAATCAAAGGTGTGGAAG CCTGCCACACATCTACGGAGCTCAAATCAAAGGTGTGGAAG < 41bp 0.821821907306541 0.617720053046553 0.08510128 0.052378953 prediction 0.408203708519975 Functional Loss - FAM189A2 ENSG00000135063 CDS Human protein_coding chr9:71998590 chr9:71998593 nonsynonymous SNV 0.904 3 24 hm5C_associated_SNPs_95097 0 0 0 0 2 FAM189A2 chr9:71998675 5'GT 71998675 Upstream 83bp
chrX 147014238 147014238 1 + T C UCEC 147014237 + 147014217 147014257 41 TGAAAAAAGCTAGAAGCTTTCTCGAATTTGCTGAAGATGTA TGAAAAAAGCTAGAAGCTTTCCCGAATTTGCTGAAGATGTA < 41bp 0.839253633997655 0.635152312537877 0.22791228 0.09388462 prediction 0.408202642919556 Functional Loss - FMR1 ENSG00000102081 CDS Human protein_coding chrX:147014237 chrX:147014238 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_95098 0 0 1 0 2 FMR1 chrX:147014204 3'AG 147014204 Downstream 35bp
chrX 147014238 147014238 1 + T C UCEC 147014237 + 147014217 147014257 41 TGAAAAAAGCTAGAAGCTTTCTCGAATTTGCTGAAGATGTA TGAAAAAAGCTAGAAGCTTTCCCGAATTTGCTGAAGATGTA < 41bp 0.839253633997655 0.635152312537877 0.22791228 0.09388462 prediction 0.408202642919556 Functional Loss - FMR1 ENSG00000102081 CDS Human protein_coding chrX:147014237 chrX:147014238 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_95098 0 0 1 0 2 FMR1 chrX:147014282 5'GT 147014282 Upstream 45bp
chr17 45994401 45994401 1 + C T ACC 45994398 + 45994378 45994418 41 TACAGATCCCCCAGCAGGCTCTGCGGGTGGTGCAGGCGGCA TACAGATCCCCCAGCAGGCTCTGTGGGTGGTGCAGGCGGCA < 41bp 0.704100451723212 0.487394163715003 0.67621726 0.37613672 prediction 0.408200903446424 Functional Loss - SP2 ENSG00000167182 CDS Human protein_coding chr17:45994398 chr17:45994401 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_95099 0 0 0 0 1 SP2 chr17:45994496 5'GT 45994496 Upstream 96bp
chrX 79279608 79279608 1 + G T UCEC 79279606 + 79279586 79279626 41 CAAGGTGAAAGGGTTGGATCCAGGGAAGCAGTACCATGTGG CAAGGTGAAAGGGTTGGATCCATGGAAGCAGTACCATGTGG < 41bp 0.922247782264353 0.71814953439696 0.8775635 0.33606008 prediction 0.408196495734787 Functional Loss - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79279606 chrX:79279608 nonsynonymous SNV 0.471 3 23 hm5C_associated_SNPs_95102 0 0 0 0 2 TBX22 chrX:79279562 3'AG 79279562 Downstream 47bp
chrX 79279608 79279608 1 + G T UCEC 79279606 + 79279586 79279626 41 CAAGGTGAAAGGGTTGGATCCAGGGAAGCAGTACCATGTGG CAAGGTGAAAGGGTTGGATCCATGGAAGCAGTACCATGTGG < 41bp 0.922247782264353 0.71814953439696 0.8775635 0.33606008 prediction 0.408196495734787 Functional Loss - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79279606 chrX:79279608 nonsynonymous SNV 0.471 3 23 hm5C_associated_SNPs_95102 0 0 0 0 2 TBX22 chrX:79279663 5'GT 79279663 Upstream 56bp
chr17 72931909 72931909 1 + G T SARC 72931905 + 72931885 72931925 41 ACAGAAAAATCGATGGGCCGCGGAGCCCGAGCGGCGGCTGC ACAGAAAAATCGATGGGCCGCGGATCCCGAGCGGCGGCTGC < 41bp 0.746490806268438 0.542394117444161 0.5515341 0.5310574 prediction 0.408193377648554 Functional Loss - OTOP3 ENSG00000182938 CDS Human protein_coding chr17:72931905 chr17:72931909 nonsynonymous SNV 0.890 1 25 hm5C_associated_SNPs_95105 0 0 0 0 1 OTOP3 chr17:72932002 5'GT 72932002 Upstream 94bp
chr17 79204427 79204427 1 - C A UCEC 79204431 - 79204411 79204451 41 GGGAGCAGCGACCTCCTCCCCCAGGAGCACATCCTCCTCCG GGGAGCAGCGACCTCCTCCCCCAGTAGCACATCCTCCTCCG < 41bp 0.741872500192659 0.537776289614605 0.75179374 0.22571379 prediction 0.408192421156108 Functional Loss - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79204431 chr17:79204427 stopgain 0.407 0 25 hm5C_associated_SNPs_95107 0 0 0 0 2 TEPSIN chr17:79204344 5'GT 79204344 Upstream 84bp
chr17 79204427 79204427 1 - C A UCEC 79204431 - 79204411 79204451 41 GGGAGCAGCGACCTCCTCCCCCAGGAGCACATCCTCCTCCG GGGAGCAGCGACCTCCTCCCCCAGTAGCACATCCTCCTCCG < 41bp 0.741872500192659 0.537776289614605 0.75179374 0.22571379 prediction 0.408192421156108 Functional Loss - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79204431 chr17:79204427 stopgain 0.407 0 25 hm5C_associated_SNPs_95107 0 0 0 0 2 TEPSIN chr17:79204478 3'AG 79204478 Downstream 52bp
chr16 227377 227377 1 + T C rs149264789 227376 + 227356 227396 41 CCTGGACAAGTTCCTGGCTTCTGTGAGCACCGTGCTGACCT CCTGGACAAGTTCCTGGCTTCCGTGAGCACCGTGCTGACCT < 41bp 0.70409596473153 0.473534491975106 0.17266643 0.26682425 prediction 0.40819192946306 Functional Loss - HBA1 ENSG00000206172 CDS Human protein_coding chr16:227376 chr16:227377 synonymous SNV . 0 22 hm5C_associated_SNPs_95108 0 0 0 0 1 HBA1 chr16:227282 3'AG 227282 Downstream 96bp
chr7 158649366 158649366 1 + G C rs571952764 158649362 + 158649342 158649382 41 GTGCGGGGCACAGGTGGCCTCTTCGGGGTGGACCGCGCCTG GTGCGGGGCACAGGTGGCCTCTTCCGGGTGGACCGCGCCTG < 41bp 0.870330079538767 0.66623757777161 0.6537364 0.44120514 prediction 0.408185003534314 Functional Loss - WDR60 ENSG00000126870 UTR5 Human protein_coding chr7:158649362 chr7:158649366 . . 0 25 hm5C_associated_SNPs_95110 0 0 1 0 1 WDR60 chr7:158649441 5'GT 158649441 Upstream 76bp
chr1 163325167 163325167 1 + G A GBM 163325164 + 163325144 163325184 41 AAACTGCTTTGGAGAAATACCACGACGGTATTGAAAAGGCA AAACTGCTTTGGAGAAATACCACAACGGTATTGAAAAGGCA < 41bp 0.750842386179109 0.546750527215138 0.14412993 0.07905543 prediction 0.408183717927942 Functional Loss - NUF2 ENSG00000143228 CDS Human protein_coding chr1:163325164 chr1:163325167 nonsynonymous SNV 0.923 1 24 hm5C_associated_SNPs_95111 0 0 1 0 1 NUF2 chr1:163325125 3'AG 163325125 Downstream 43bp
chr9 136256472 136256472 1 + C T UCEC 136256469 + 136256449 136256489 41 GGTTTCAGGAATCTCAAACCCTCCAACATCATCCTCATCAG GGTTTCAGGAATCTCAAACCCTCTAACATCATCCTCATCAG < 41bp 0.704091711572669 0.483351767000189 0.96361077 0.94536865 prediction 0.408183423145339 Functional Loss - STKLD1 ENSG00000198870 CDS Human protein_coding chr9:136256469 chr9:136256472 synonymous SNV . 0 24 hm5C_associated_SNPs_95112 0 0 0 0 1 STKLD1 chr9:136256457 3'AG 136256457 Downstream 16bp
chr18 47091790 47091790 1 + C T UCEC 47091787 + 47091767 47091807 41 GAGCATGAAGGATGCTACCTCTCCGTCGGCCACAGCCAGCC GAGCATGAAGGATGCTACCTCTCTGTCGGCCACAGCCAGCC < 41bp 0.798425946632179 0.59433625669663 0.10128528 0.03291139 prediction 0.408179379871096 Functional Loss - LIPG ENSG00000101670 CDS Human protein_coding chr18:47091787 chr18:47091790 synonymous SNV . 0 24 hm5C_associated_SNPs_95113 0 0 0 0 1 LIPG chr18:47091868 5'GT 47091868 Upstream 79bp
chrX 103045517 103045517 1 + C T LUAD 103045514 + 103045494 103045534 41 CTTAAACTCATGGGCCGAGGCACCAAGTTCTGATCCCCCGT CTTAAACTCATGGGCCGAGGCACTAAGTTCTGATCCCCCGT < 41bp 0.77665846959812 0.572572780919905 0.056807905 0.059350193 prediction 0.40817137735643 Functional Loss - PLP1 ENSG00000123560 CDS Human protein_coding chrX:103045514 chrX:103045517 synonymous SNV . 0 24 hm5C_associated_SNPs_95114 0 0 1 0 1 PLP1 chrX:103045455 3'AG 103045455 Downstream 63bp
chr19 55175342 55175342 1 + A C OV 55175338 + 55175318 55175358 41 TCTGGATAAAGAGGAAAGCCCAGCACCCTGGGACAGACAGA TCTGGATAAAGAGGAAAGCCCAGCCCCCTGGGACAGACAGA < 41bp 0.704084679628431 0.297620847855705 0.34033838 0.3018136 prediction 0.408169359256863 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55175338 chr19:55175342 synonymous SNV . 0 25 hm5C_associated_SNPs_95115 0 0 0 0 1 LILRB4 chr19:55175261 3'AG 55175261 Downstream 82bp
chr20 4705251 4705251 1 + C T CESC 4705248 + 4705228 4705268 41 GCCACTGTCTGCATGCTGCTCTTCAGCCACCTCTCTGCGGT GCCACTGTCTGCATGCTGCTCTTTAGCCACCTCTCTGCGGT < 41bp 0.730744648536876 0.526662800301946 0.13787359 0.12072325 prediction 0.408163696469861 Functional Loss - PRND ENSG00000171864 CDS Human protein_coding chr20:4705248 chr20:4705251 synonymous SNV . 0 24 hm5C_associated_SNPs_95118 0 0 0 0 1 PRND chr20:4705187 3'AG 4705187 Downstream 65bp
chr2 234237233 234237233 1 + C T UCEC 234237230 + 234237210 234237250 41 TCTTCATGTCTGACAAGCCCCTGCACCTTGCGGTCTCTCTC TCTTCATGTCTGACAAGCCCCTGTACCTTGCGGTCTCTCTC < 41bp 0.770946345663509 0.566867079906698 0.13306129 0.08840135 prediction 0.408158531513623 Functional Loss - SAG ENSG00000130561 CDS Human protein_coding chr2:234237230 chr2:234237233 nonsynonymous SNV 0.181 2 24 hm5C_associated_SNPs_95120 0 0 0 0 1 SAG chr2:234237259 5'GT 234237259 Upstream 27bp
chr16 57155052 57155052 1 + C T UCEC 57155049 + 57155029 57155069 41 GACGGGGGCCATGACTTCATCGGCGAGTTCCAGACCTCAGT GACGGGGGCCATGACTTCATCGGTGAGTTCCAGACCTCAGT < 41bp 0.759575524023356 0.555498309432511 0.89097166 0.8562788 prediction 0.40815442918169 Functional Loss - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57155049 chr16:57155052 synonymous SNV . 0 24 hm5C_associated_SNPs_95123 0 0 0 0 2 CPNE2 chr16:57155005 3'AG 57155005 Downstream 48bp
chr16 57155052 57155052 1 + C T UCEC 57155049 + 57155029 57155069 41 GACGGGGGCCATGACTTCATCGGCGAGTTCCAGACCTCAGT GACGGGGGCCATGACTTCATCGGTGAGTTCCAGACCTCAGT < 41bp 0.759575524023356 0.555498309432511 0.89097166 0.8562788 prediction 0.40815442918169 Functional Loss - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57155049 chr16:57155052 synonymous SNV . 0 24 hm5C_associated_SNPs_95123 0 0 0 0 2 CPNE2 chr16:57155103 5'GT 57155103 Upstream 52bp
chr17 78178082 78178082 1 + G T SARC 78178079 + 78178059 78178099 41 ATCGTCAGTATGGACAAAGCCAAGGCCAGCCCTCTGCGTTT ATCGTCAGTATGGACAAAGCCAATGCCAGCCCTCTGCGTTT < 41bp 0.704076705461181 0.295863035652999 0.67559344 0.14792752 prediction 0.408153410922362 Functional Loss - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78178079 chr17:78178082 nonsynonymous SNV 0.042 0 24 hm5C_associated_SNPs_95124 0 0 0 0 2 CARD14 chr17:78178026 3'AG 78178026 Downstream 57bp
chr17 78178082 78178082 1 + G T SARC 78178079 + 78178059 78178099 41 ATCGTCAGTATGGACAAAGCCAAGGCCAGCCCTCTGCGTTT ATCGTCAGTATGGACAAAGCCAATGCCAGCCCTCTGCGTTT < 41bp 0.704076705461181 0.295863035652999 0.67559344 0.14792752 prediction 0.408153410922362 Functional Loss - CARD14 ENSG00000141527 CDS Human antisense chr17:78178079 chr17:78178082 nonsynonymous SNV 0.042 0 24 hm5C_associated_SNPs_95124 0 0 0 0 2 CARD14 chr17:78178150 5'GT 78178150 Upstream 69bp
chr18 33754520 33754520 1 + A C BLCA 33754519 + 33754499 33754539 41 AAAAACTGAACAGAAGGAAGCAGAAGGTGCTGAGTGGTTAC AAAAACTGAACAGAAGGAAGCCGAAGGTGCTGAGTGGTTAC < 41bp 0.704073703322611 0.452063484440173 0.65684694 0.42331442 prediction 0.408147406645222 Functional Loss - ELP2 ENSG00000134759 CDS Human protein_coding chr18:33754519 chr18:33754520 synonymous SNV . 0 22 hm5C_associated_SNPs_95128 0 0 1 0 1 ELP2 chr18:33754448 3'AG 33754448 Downstream 73bp
chr11 1477642 1477642 1 + G A rs33996815 1477639 + 1477619 1477659 41 CCGGGCCGAGTACAAGGCCACGGGGGGGCCAGCCGTGTTCC CCGGGCCGAGTACAAGGCCACGGAGGGGCCAGCCGTGTTCC < 41bp 0.816756024884749 0.612682896104752 0.9140805 0.875156 prediction 0.408146257559994 Functional Loss - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1477639 chr11:1477642 nonsynonymous SNV 0.050 1 24 hm5C_associated_SNPs_95129 0 0 1 0 1 BRSK2 chr11:1477578 3'AG 1477578 Downstream 65bp
chr5 150838400 150838400 1 + C T SKCM 150838398 + 150838378 150838418 41 GAAGACTACCACGACTACAGCTCCACGGACGTGAGCCCTGA GAAGACTACCACGACTACAGCTTCACGGACGTGAGCCCTGA < 41bp 0.704072672744402 0.401278290984446 0.43116438 0.06360003 prediction 0.408145345488804 Functional Loss - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150838398 chr5:150838400 nonsynonymous SNV 0.985 0 23 hm5C_associated_SNPs_95130 0 0 1 0 2 SLC36A1 chr5:150838349 3'AG 150838349 Downstream 52bp
chr5 150838400 150838400 1 + C T SKCM 150838398 + 150838378 150838418 41 GAAGACTACCACGACTACAGCTCCACGGACGTGAGCCCTGA GAAGACTACCACGACTACAGCTTCACGGACGTGAGCCCTGA < 41bp 0.704072672744402 0.401278290984446 0.43116438 0.06360003 prediction 0.408145345488804 Functional Loss - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150838398 chr5:150838400 nonsynonymous SNV 0.985 0 23 hm5C_associated_SNPs_95130 0 0 1 0 2 SLC36A1 chr5:150838496 5'GT 150838496 Upstream 97bp
chr5 150838401 150838401 1 + C T SKCM 150838398 + 150838378 150838418 41 GAAGACTACCACGACTACAGCTCCACGGACGTGAGCCCTGA GAAGACTACCACGACTACAGCTCTACGGACGTGAGCCCTGA < 41bp 0.704072672744402 0.468471814120809 0.43116438 0.39104977 prediction 0.408145345488804 Functional Loss - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150838398 chr5:150838401 synonymous SNV . 0 24 hm5C_associated_SNPs_95131 0 0 1 0 2 SLC36A1 chr5:150838349 3'AG 150838349 Downstream 53bp
chr5 150838401 150838401 1 + C T SKCM 150838398 + 150838378 150838418 41 GAAGACTACCACGACTACAGCTCCACGGACGTGAGCCCTGA GAAGACTACCACGACTACAGCTCTACGGACGTGAGCCCTGA < 41bp 0.704072672744402 0.468471814120809 0.43116438 0.39104977 prediction 0.408145345488804 Functional Loss - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150838398 chr5:150838401 synonymous SNV . 0 24 hm5C_associated_SNPs_95131 0 0 1 0 2 SLC36A1 chr5:150838496 5'GT 150838496 Upstream 96bp
chr16 3071633 3071633 1 + G A STAD 3071630 + 3071610 3071650 41 CTCTGAGCCTGACCTTCGTGCTGGGGCTGCTTTCTGGCTTT CTCTGAGCCTGACCTTCGTGCTGAGGCTGCTTTCTGGCTTT < 41bp 0.845471918589941 0.641399312702086 0.8893569 0.52131975 prediction 0.408145211775709 Functional Loss - TNFRSF12A ENSG00000006327 CDS Human protein_coding chr16:3071630 chr16:3071633 nonsynonymous SNV 0.864 1 24 hm5C_associated_SNPs_95132 0 0 1 0 2 TNFRSF12A chr16:3071556 3'AG 3071556 Downstream 78bp
chr16 3071633 3071633 1 + G A STAD 3071630 + 3071610 3071650 41 CTCTGAGCCTGACCTTCGTGCTGGGGCTGCTTTCTGGCTTT CTCTGAGCCTGACCTTCGTGCTGAGGCTGCTTTCTGGCTTT < 41bp 0.845471918589941 0.641399312702086 0.8893569 0.52131975 prediction 0.408145211775709 Functional Loss - TNFRSF12A ENSG00000006327 CDS Human protein_coding chr16:3071630 chr16:3071633 nonsynonymous SNV 0.864 1 24 hm5C_associated_SNPs_95132 0 0 1 0 2 TNFRSF12A chr16:3071690 5'GT 3071690 Upstream 58bp
chr2 219222441 219222441 1 + C T HNSC 219222438 + 219222418 219222458 41 GGCTTCTTGGACAAAATGCTCTGCGGAAATTCCCTCCTGGG GGCTTCTTGGACAAAATGCTCTGTGGAAATTCCCTCCTGGG < 41bp 0.704070981632678 0.499051747960998 0.44341275 0.2191464 prediction 0.408141963265355 Functional Loss - CATIP ENSG00000158428 CDS Human protein_coding chr2:219222438 chr2:219222441 synonymous SNV . 0 24 hm5C_associated_SNPs_95133 0 0 0 0 1 CATIP chr2:219222457 5'GT 219222457 Upstream 17bp
chr17 34313687 34313687 1 - C A COAD 34313689 - 34313669 34313709 41 CCTCCCACAACAGCTTCCCACAGCATGAAGATCTCCGTGGC CCTCCCACAACAGCTTCCCACATCATGAAGATCTCCGTGGC < 41bp 0.837893049940059 0.633824900300522 0.28098583 0.12045616 prediction 0.408136299279074 Functional Loss - CCL15-CCL14 ENSG00000266956 CDS Human other chr17:34313689 chr17:34313687 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_95135 0 0 0 0 2 CCL14 chr17:34313607 5'GT 34313607 Upstream 81bp
chr17 34313687 34313687 1 - C A COAD 34313689 - 34313669 34313709 41 CCTCCCACAACAGCTTCCCACAGCATGAAGATCTCCGTGGC CCTCCCACAACAGCTTCCCACATCATGAAGATCTCCGTGGC < 41bp 0.837893049940059 0.633824900300522 0.28098583 0.12045616 prediction 0.408136299279074 Functional Loss - CCL15-CCL14 ENSG00000266956 CDS Human other chr17:34313689 chr17:34313687 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_95135 0 0 0 0 2 CCL15-CCL14 chr17:34313740 3'AG 34313740 Downstream 54bp
chr6 36976680 36976680 1 + G A BRCA 36976677 + 36976657 36976697 41 ACCGCCCTGAGTGCAGGCCTCCCGAGTCCCCAGGACCACGG ACCGCCCTGAGTGCAGGCCTCCCAAGTCCCCAGGACCACGG < 41bp 0.704065004018892 0.467668606431189 0.5135519 0.47096527 prediction 0.408130008037785 Functional Loss - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36976677 chr6:36976680 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_95140 0 0 0 0 1 FGD2 chr6:36976610 3'AG 36976610 Downstream 71bp
chr4 71500262 71500262 1 + G A SKCM 71500259 + 71500239 71500279 41 CATCACATAATCAACCTCAGCCCGAAGAGGAAGCTCAACCC CATCACATAATCAACCTCAGCCCAAAGAGGAAGCTCAACCC < 41bp 0.704060895927874 0.467450289572106 0.18414679 0.20463142 prediction 0.408121791855748 Functional Loss - ENAM ENSG00000132464 CDS Human protein_coding chr4:71500259 chr4:71500262 nonsynonymous SNV 0.023 0 24 hm5C_associated_SNPs_95143 0 0 0 0 1 ENAM chr4:71500285 5'GT 71500285 Upstream 24bp
chr13 46287406 46287406 1 + C T UCEC 46287403 + 46287383 46287423 41 GCCGCCCTGCCCCGGCTGAGCCGCAGGATGGCGAGCCAGCA GCCGCCCTGCCCCGGCTGAGCCGTAGGATGGCGAGCCAGCA < 41bp 0.704060112332333 0.493383564937604 0.28427827 0.57660055 prediction 0.408120224664666 Functional Loss - SPERT ENSG00000174015 CDS Human protein_coding chr13:46287403 chr13:46287406 synonymous SNV . 0 24 hm5C_associated_SNPs_95144 0 0 0 0 1 SPERT chr13:46287317 3'AG 46287317 Downstream 90bp
chr14 51371130 51371130 1 + C T rs11157780 51371127 + 51371107 51371147 41 CAATGAAGACTTGGCCCAAACACCACCTGTGATGTATATTG CAATGAAGACTTGGCCCAAACACTACCTGTGATGTATATTG < 41bp 0.709447689665777 0.505388525183505 0.028524995 0.027404785 prediction 0.408118328964544 Functional Loss - ABHD12B ENSG00000131969 UTR3 Human protein_coding chr14:51371127 chr14:51371130 . . 0 24 hm5C_associated_SNPs_95145 0 0 0 0 1 ABHD12B chr14:51371057 3'AG 51371057 Downstream 74bp
chr7 133827912 133827912 1 + C T SKCM 133827910 + 133827890 133827930 41 ATTTCAAGCCACCCAAAAACCTCAAGGTAGACTTTATGAAT ATTTCAAGCCACCCAAAAACCTTAAGGTAGACTTTATGAAT < 41bp 0.704055806939865 0.412738365317988 0.030653566 0.03199452 prediction 0.40811161387973 Functional Loss - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133827910 chr7:133827912 synonymous SNV . 0 23 hm5C_associated_SNPs_95147 0 0 0 0 2 LRGUK chr7:133827815 3'AG 133827815 Downstream 98bp
chr7 133827912 133827912 1 + C T SKCM 133827910 + 133827890 133827930 41 ATTTCAAGCCACCCAAAAACCTCAAGGTAGACTTTATGAAT ATTTCAAGCCACCCAAAAACCTTAAGGTAGACTTTATGAAT < 41bp 0.704055806939865 0.412738365317988 0.030653566 0.03199452 prediction 0.40811161387973 Functional Loss - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133827910 chr7:133827912 synonymous SNV . 0 23 hm5C_associated_SNPs_95147 0 0 0 0 2 LRGUK chr7:133827915 5'GT 133827915 Upstream 4bp
chr16 105857 105857 1 + G A CESC 105854 + 105834 105874 41 ACGTGCAGCTCAAGCAGGAGCGTGAAGGGGGCATTCAGCAC ACGTGCAGCTCAAGCAGGAGCGTAAAGGGGGCATTCAGCAC < 41bp 0.820431477726616 0.616376003032351 0.4598242 0.14591965 prediction 0.40811094938853 Functional Loss - SNRNP25 ENSG00000161981 CDS Human protein_coding chr16:105854 chr16:105857 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_95148 0 0 1 0 2 SNRNP25 chr16:105777 3'AG 105777 Downstream 81bp
chr16 105857 105857 1 + G A CESC 105854 + 105834 105874 41 ACGTGCAGCTCAAGCAGGAGCGTGAAGGGGGCATTCAGCAC ACGTGCAGCTCAAGCAGGAGCGTAAAGGGGGCATTCAGCAC < 41bp 0.820431477726616 0.616376003032351 0.4598242 0.14591965 prediction 0.40811094938853 Functional Loss - SNRNP25 ENSG00000161981 CDS Human protein_coding chr16:105854 chr16:105857 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_95148 0 0 1 0 2 SNRNP25 chr16:105882 5'GT 105882 Upstream 26bp
chr20 36932735 36932735 1 + C T SKCM 36932733 + 36932713 36932753 41 CCTGGCGTCGTGGTCAGGATCTCCCAGAAGGGCCTGGACTA CCTGGCGTCGTGGTCAGGATCTTCCAGAAGGGCCTGGACTA < 41bp 0.704053422711469 0.429866820110603 0.039909065 0.06623942 prediction 0.408106845422938 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36932733 chr20:36932735 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_95149 0 0 0 0 1 BPI chr20:36932755 5'GT 36932755 Upstream 21bp
chr22 38470393 38470393 1 + G A UCEC 38470390 + 38470370 38470410 41 CCTGCGCTGCCGCCAGGAGGCGCGCGCCCGCTTCTCCCAGA CCTGCGCTGCCGCCAGGAGGCGCACGCCCGCTTCTCCCAGA < 41bp 0.814388046697518 0.610344127667695 0.36749706 0.172607 prediction 0.408087838059647 Functional Loss - PICK1 ENSG00000100151 CDS Human protein_coding chr22:38470390 chr22:38470393 nonsynonymous SNV 0.836 4 24 hm5C_associated_SNPs_95157 0 0 1 0 2 PICK1 chr22:38470314 3'AG 38470314 Downstream 80bp
chr22 38470393 38470393 1 + G A UCEC 38470390 + 38470370 38470410 41 CCTGCGCTGCCGCCAGGAGGCGCGCGCCCGCTTCTCCCAGA CCTGCGCTGCCGCCAGGAGGCGCACGCCCGCTTCTCCCAGA < 41bp 0.814388046697518 0.610344127667695 0.36749706 0.172607 prediction 0.408087838059647 Functional Loss - PICK1 ENSG00000100151 CDS Human protein_coding chr22:38470390 chr22:38470393 nonsynonymous SNV 0.836 4 24 hm5C_associated_SNPs_95157 0 0 1 0 2 PICK1 chr22:38470458 5'GT 38470458 Upstream 66bp
chr8 144461115 144461115 1 + G T SARC 144461113 + 144461093 144461133 41 TTACTGGGGTCCCGGCCCAGCAGCGTGCCCTGGCCTTCGAG TTACTGGGGTCCCGGCCCAGCATCGTGCCCTGGCCTTCGAG < 41bp 0.704043074838852 0.336334375336315 0.25030327 0.12824786 prediction 0.408086149677703 Functional Loss - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144461113 chr8:144461115 nonsynonymous SNV 0.942 3 23 hm5C_associated_SNPs_95158 0 0 0 0 1 RHPN1 chr8:144461082 3'AG 144461082 Downstream 34bp
chr1 55145619 55145619 1 + G A rs148550771 55145616 + 55145596 55145636 41 GCTGAGCCACATCCAGGAGCCTCGGGCCCGCCAGGTGGCCC GCTGAGCCACATCCAGGAGCCTCAGGCCCGCCAGGTGGCCC < 41bp 0.804961665513434 0.600919075540882 0.88930714 0.85859656 prediction 0.408085179945104 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55145616 chr1:55145619 nonsynonymous SNV 0.821 2 24 hm5C_associated_SNPs_95160 0 0 0 0 2 MROH7 chr1:55145564 3'AG 55145564 Downstream 56bp
chr1 55145619 55145619 1 + G A rs148550771 55145616 + 55145596 55145636 41 GCTGAGCCACATCCAGGAGCCTCGGGCCCGCCAGGTGGCCC GCTGAGCCACATCCAGGAGCCTCAGGCCCGCCAGGTGGCCC < 41bp 0.804961665513434 0.600919075540882 0.88930714 0.85859656 prediction 0.408085179945104 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55145616 chr1:55145619 nonsynonymous SNV 0.821 2 24 hm5C_associated_SNPs_95160 0 0 0 0 2 MROH7 chr1:55145718 5'GT 55145718 Upstream 100bp
chr16 67030004 67030004 1 + G A rs560705804 67030001 + 67029981 67030021 41 GCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAA GCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAA < 41bp 0.8227760967168 0.61873612666145 0.6148973 0.47871423 prediction 0.4080799401107 Functional Loss - CES4A ENSG00000172824 CDS Human protein_coding chr16:67030001 chr16:67030004 unknown . 0 24 hm5C_associated_SNPs_95161 0 0 0 0 2 CES4A chr16:67029963 3'AG 67029963 Downstream 42bp
chr16 67030004 67030004 1 + G A rs560705804 67030001 + 67029981 67030021 41 GCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAA GCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAA < 41bp 0.8227760967168 0.61873612666145 0.6148973 0.47871423 prediction 0.4080799401107 Functional Loss - CES4A ENSG00000172824 CDS Human protein_coding chr16:67030001 chr16:67030004 unknown . 0 24 hm5C_associated_SNPs_95161 0 0 0 0 2 CES4A chr16:67030082 5'GT 67030082 Upstream 79bp
chr16 842518 842518 1 + C T rs35387463 842515 + 842495 842535 41 GCCACAGGGCCCGGCTGTGCCTTCGGGAGGCGGCCGACGGC GCCACAGGGCCCGGCTGTGCCTTTGGGAGGCGGCCGACGGC < 41bp 0.725155587364308 0.521118694651834 0.3178195 0.23393595 prediction 0.408073785424948 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842515 chr16:842518 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_95164 0 0 1 0 2 CHTF18 chr16:842439 3'AG 842439 Downstream 80bp
chr16 842518 842518 1 + C T rs35387463 842515 + 842495 842535 41 GCCACAGGGCCCGGCTGTGCCTTCGGGAGGCGGCCGACGGC GCCACAGGGCCCGGCTGTGCCTTTGGGAGGCGGCCGACGGC < 41bp 0.725155587364308 0.521118694651834 0.3178195 0.23393595 prediction 0.408073785424948 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842515 chr16:842518 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_95164 0 0 1 0 2 CHTF18 chr16:842590 5'GT 842590 Upstream 73bp
chr9 131846957 131846957 1 + T C rs11541836 131846956 + 131846936 131846976 41 TGTCTTGCCAGGTGATCTCTCTGGCCACCTCCTTGCCTACC TGTCTTGCCAGGTGATCTCTCCGGCCACCTCCTTGCCTACC < 41bp 0.704031403511853 0.463501437990549 0.8996713 0.935367 prediction 0.408062807023705 Functional Loss - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846956 chr9:131846957 synonymous SNV . 0 22 hm5C_associated_SNPs_95172 0 0 1 0 2 DOLPP1 chr9:131846947 3'AG 131846947 Downstream 11bp
chr9 131846957 131846957 1 + T C rs11541836 131846956 + 131846936 131846976 41 TGTCTTGCCAGGTGATCTCTCTGGCCACCTCCTTGCCTACC TGTCTTGCCAGGTGATCTCTCCGGCCACCTCCTTGCCTACC < 41bp 0.704031403511853 0.463501437990549 0.8996713 0.935367 prediction 0.408062807023705 Functional Loss - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846956 chr9:131846957 synonymous SNV . 0 22 hm5C_associated_SNPs_95172 0 0 1 0 2 DOLPP1 chr9:131847047 5'GT 131847047 Upstream 91bp
chr12 113534587 113534587 1 + C T ESCA 113534585 + 113534565 113534605 41 ACTATCGGCACGTCCAACACCACGGGCGAGTCGGACACCGT ACTATCGGCACGTCCAACACCATGGGCGAGTCGGACACCGT < 41bp 0.704030723908696 0.435004321259396 0.45727724 0.6078557 prediction 0.408061447817392 Functional Loss - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113534585 chr12:113534587 nonsynonymous SNV 0.987 4 23 hm5C_associated_SNPs_95173 0 0 0 0 1 DTX1 chr12:113534520 3'AG 113534520 Downstream 68bp
chr12 113534588 113534588 1 + G T LUSC 113534585 + 113534565 113534605 41 ACTATCGGCACGTCCAACACCACGGGCGAGTCGGACACCGT ACTATCGGCACGTCCAACACCACTGGCGAGTCGGACACCGT < 41bp 0.704030723908696 0.30551546611884 0.45727724 0.12383658 prediction 0.408061447817392 Functional Loss - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113534585 chr12:113534588 synonymous SNV . 0 24 hm5C_associated_SNPs_95174 0 0 0 0 1 DTX1 chr12:113534520 3'AG 113534520 Downstream 69bp
chr1 32740385 32740385 1 + C T HNSC 32740382 + 32740362 32740402 41 GTGCGGGACCCACTGGTTACCTACGAAGGCTCCAATCCGCC GTGCGGGACCCACTGGTTACCTATGAAGGCTCCAATCCGCC < 41bp 0.704029461625083 0.489472081252713 0.06287867 0.10845816 prediction 0.408058923250165 Functional Loss - LCK ENSG00000182866 CDS Human protein_coding chr1:32740382 chr1:32740385 synonymous SNV . 0 24 hm5C_associated_SNPs_95177 0 0 0 0 2 LCK chr1:32740338 3'AG 32740338 Downstream 48bp
chr1 32740385 32740385 1 + C T HNSC 32740382 + 32740362 32740402 41 GTGCGGGACCCACTGGTTACCTACGAAGGCTCCAATCCGCC GTGCGGGACCCACTGGTTACCTATGAAGGCTCCAATCCGCC < 41bp 0.704029461625083 0.489472081252713 0.06287867 0.10845816 prediction 0.408058923250165 Functional Loss - LCK ENSG00000182866 CDS Human protein_coding chr1:32740382 chr1:32740385 synonymous SNV . 0 24 hm5C_associated_SNPs_95177 0 0 0 0 2 LCK chr1:32740419 5'GT 32740419 Upstream 35bp
chr22 46238933 46238933 1 + G A UCEC 46238930 + 46238910 46238950 41 CCGAAGACAACAGCCAAAACCAAGATTTGATTGCAAAGATG CCGAAGACAACAGCCAAAACCAAAATTTGATTGCAAAGATG < 41bp 0.799961966364699 0.595940168797606 0.4819351 0.23417857 prediction 0.408043595134186 Functional Loss - ATXN10 ENSG00000130638 CDS Human protein_coding chr22:46238930 chr22:46238933 nonsynonymous SNV 0.984 0 24 hm5C_associated_SNPs_95181 0 0 1 0 1 ATXN10 chr22:46238871 3'AG 46238871 Downstream 63bp
chr11 46329471 46329471 1 + G T rs527766422 46329469 + 46329449 46329489 41 GGACCCTCTGGCTGCCCCCTCGGCCATGGCTGCCGCGGCCG GGACCCTCTGGCTGCCCCCTCGTCCATGGCTGCCGCGGCCG < 41bp 0.704017263822147 0.342866999638958 0.46478423 0.46013495 prediction 0.408034527644294 Functional Loss - CREB3L1 ENSG00000157613 CDS Human protein_coding chr11:46329469 chr11:46329471 nonsynonymous SNV 0.393 0 23 hm5C_associated_SNPs_95184 0 0 0 0 1 CREB3L1 chr11:46329551 5'GT 46329551 Upstream 81bp
chr17 40458321 40458321 1 + C T GBM 40458318 + 40458298 40458338 41 CCGCAGCTGTGTGAGGCGCTCAACATGAAATTCAAGGCCGA CCGCAGCTGTGTGAGGCGCTCAATATGAAATTCAAGGCCGA < 41bp 0.704015306733811 0.480739505305693 0.3196154 0.2483238 prediction 0.408030613467622 Functional Loss - STAT5A ENSG00000126561 CDS Human protein_coding chr17:40458318 chr17:40458321 synonymous SNV . 0 24 hm5C_associated_SNPs_95186 0 0 1 0 1 STAT5A chr17:40458259 3'AG 40458259 Downstream 63bp
chr19 16874684 16874684 1 + C T UCEC 16874681 + 16874661 16874701 41 TCTCACATACGGTTGCAAACCTGCGGAAGCTGAAGGAGTTG TCTCACATACGGTTGCAAACCTGTGGAAGCTGAAGGAGTTG < 41bp 0.704015092108919 0.480374151748324 0.3595044 0.18029106 prediction 0.408030184217839 Functional Loss - NWD1 ENSG00000188039 CDS Human protein_coding chr19:16874681 chr19:16874684 nonsynonymous SNV 0.821 5 24 hm5C_associated_SNPs_95187 0 0 0 0 2 NWD1 chr19:16874639 3'AG 16874639 Downstream 46bp
chr19 16874684 16874684 1 + C T UCEC 16874681 + 16874661 16874701 41 TCTCACATACGGTTGCAAACCTGCGGAAGCTGAAGGAGTTG TCTCACATACGGTTGCAAACCTGTGGAAGCTGAAGGAGTTG < 41bp 0.704015092108919 0.480374151748324 0.3595044 0.18029106 prediction 0.408030184217839 Functional Loss - NWD1 ENSG00000188039 CDS Human protein_coding chr19:16874681 chr19:16874684 nonsynonymous SNV 0.821 5 24 hm5C_associated_SNPs_95187 0 0 0 0 2 NWD1 chr19:16874756 5'GT 16874756 Upstream 73bp
chr22 24836575 24836575 1 + G A UCEC 24836572 + 24836552 24836592 41 TACAATGGCTTGGTGACCGGCACGAGGGCTAAGGGCATCAT TACAATGGCTTGGTGACCGGCACAAGGGCTAAGGGCATCAT < 41bp 0.799514702468063 0.595501548658804 0.38196075 0.44975916 prediction 0.408026307618518 Functional Loss - ADORA2A ENSG00000128271 CDS Human protein_coding chr22:24836572 chr22:24836575 synonymous SNV . 0 24 hm5C_associated_SNPs_95190 0 0 1 0 1 ADORA2A chr22:24836551 3'AG 24836551 Downstream 25bp
chr5 113698884 113698884 1 + G T KIRC 113698880 + 113698860 113698900 41 AAGCGCAAGCGGCTCAGCGACTACGCGCTCATCTTCGGCAT AAGCGCAAGCGGCTCAGCGACTACTCGCTCATCTTCGGCAT < 41bp 0.726022375407067 0.52201044110989 0.040020913 0.05190763 prediction 0.408023868594355 Functional Loss - KCNN2 ENSG00000080709 CDS Human protein_coding chr5:113698880 chr5:113698884 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_95191 0 0 0 0 1 KCNN2 chr5:113698958 5'GT 113698958 Upstream 75bp
chr20 36026134 36026134 1 + A T LUAD 36026130 + 36026110 36026150 41 GATGGCCTGTGCCACCGCCTCACCACCGTGTGCCCCACGTC GATGGCCTGTGCCACCGCCTCACCTCCGTGTGCCCCACGTC < 41bp 0.704011803327606 0.341261706076838 0.11414221 0.05701348 prediction 0.408023606655212 Functional Loss - SRC ENSG00000197122 CDS Human protein_coding chr20:36026130 chr20:36026134 nonsynonymous SNV 0.959 1 25 hm5C_associated_SNPs_95192 0 0 0 0 1 SRC chr20:36026102 3'AG 36026102 Downstream 33bp
chr9 34512190 34512190 1 + C T BLCA 34512188 + 34512168 34512208 41 GCAGGATTGTGTCTTGGACTCTCGTGAAGGTGCCTATTTCC GCAGGATTGTGTCTTGGACTCTTGTGAAGGTGCCTATTTCC < 41bp 0.704010695256196 0.414517128348237 0.2027303 0.08063465 prediction 0.408021390512392 Functional Loss - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34512188 chr9:34512190 synonymous SNV . 0 23 hm5C_associated_SNPs_95194 0 0 0 0 2 DNAI1 chr9:34512107 3'AG 34512107 Downstream 84bp
chr9 34512190 34512190 1 + C T BLCA 34512188 + 34512168 34512208 41 GCAGGATTGTGTCTTGGACTCTCGTGAAGGTGCCTATTTCC GCAGGATTGTGTCTTGGACTCTTGTGAAGGTGCCTATTTCC < 41bp 0.704010695256196 0.414517128348237 0.2027303 0.08063465 prediction 0.408021390512392 Functional Loss - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34512188 chr9:34512190 synonymous SNV . 0 23 hm5C_associated_SNPs_95194 0 0 0 0 2 DNAI1 chr9:34512196 5'GT 34512196 Upstream 7bp
chr3 158262013 158262013 1 + G A SKCM 158262010 + 158261990 158262030 41 GATGCTGAGGAAAAATGGTTCAAGAGATTAATTGCTCTCCG GATGCTGAGGAAAAATGGTTCAAAAGATTAATTGCTCTCCG < 41bp 0.729849204406542 0.525838897735255 0.87660325 0.34261915 prediction 0.408020613342574 Functional Loss - RSRC1 ENSG00000174891 CDS Human protein_coding chr3:158262010 chr3:158262013 synonymous SNV . 0 24 hm5C_associated_SNPs_95195 0 0 1 0 1 RSRC1 chr3:158261972 3'AG 158261972 Downstream 42bp
chr10 129845903 129845903 1 + C T rs7912703 129845901 + 129845881 129845921 41 ACACAGAGGCCAGGCCTTAGCGCGGCTCAGCCATGAGCAAC ACACAGAGGCCAGGCCTTAGCGTGGCTCAGCCATGAGCAAC < 41bp 0.795208915427742 0.591202261637744 0.877029 0.88478786 prediction 0.408013307579996 Functional Loss - PTPRE ENSG00000132334 UTR5 Human protein_coding chr10:129845901 chr10:129845903 . . 0 23 hm5C_associated_SNPs_95197 0 0 0 0 1 PTPRE chr10:129845947 5'GT 129845947 Upstream 45bp
chr1 156845920 156845920 1 + G T UCEC 156845916 + 156845896 156845936 41 ACATCGTGCTCAAGTGGGAGCTGGGGGAGGGCGCCTTTGGG ACATCGTGCTCAAGTGGGAGCTGGTGGAGGGCGCCTTTGGG < 41bp 0.736001280036253 0.531998430721861 0.87878394 0.7005497 prediction 0.408005698628784 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845916 chr1:156845920 nonsynonymous SNV 0.954 5 25 hm5C_associated_SNPs_95199 0 0 1 0 3 NTRK1 chr1:156845863 3'AG 156845863 Downstream 58bp
chr1 156845920 156845920 1 + G T UCEC 156845916 + 156845896 156845936 41 ACATCGTGCTCAAGTGGGAGCTGGGGGAGGGCGCCTTTGGG ACATCGTGCTCAAGTGGGAGCTGGTGGAGGGCGCCTTTGGG < 41bp 0.736001280036253 0.531998430721861 0.87878394 0.7005497 prediction 0.408005698628784 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845916 chr1:156845920 nonsynonymous SNV 0.954 5 25 hm5C_associated_SNPs_95199 0 0 1 0 3 NTRK1 chr1:156845872 3'AG 156845872 Downstream 49bp
chr1 156845920 156845920 1 + G T UCEC 156845916 + 156845896 156845936 41 ACATCGTGCTCAAGTGGGAGCTGGGGGAGGGCGCCTTTGGG ACATCGTGCTCAAGTGGGAGCTGGTGGAGGGCGCCTTTGGG < 41bp 0.736001280036253 0.531998430721861 0.87878394 0.7005497 prediction 0.408005698628784 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845916 chr1:156845920 nonsynonymous SNV 0.954 5 25 hm5C_associated_SNPs_95199 0 0 1 0 3 NTRK1 chr1:156846002 5'GT 156846002 Upstream 83bp
chr16 15661905 15661905 1 + C T UCEC 15661903 + 15661883 15661923 41 CAGGAGCTGCAGAACTTGGTCGCCATCCCAGGTAACCATTT CAGGAGCTGCAGAACTTGGTCGTCATCCCAGGTAACCATTT < 41bp 0.703998742353183 0.402025551031844 0.90751994 0.39886817 prediction 0.407997484706367 Functional Loss - C16orf45 ENSG00000166780 CDS Human protein_coding chr16:15661903 chr16:15661905 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_95203 0 0 0 0 2 C16orf45 chr16:15661840 3'AG 15661840 Downstream 66bp
chr16 15661905 15661905 1 + C T UCEC 15661903 + 15661883 15661923 41 CAGGAGCTGCAGAACTTGGTCGCCATCCCAGGTAACCATTT CAGGAGCTGCAGAACTTGGTCGTCATCCCAGGTAACCATTT < 41bp 0.703998742353183 0.402025551031844 0.90751994 0.39886817 prediction 0.407997484706367 Functional Loss - C16orf45 ENSG00000166780 CDS Human protein_coding chr16:15661903 chr16:15661905 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_95203 0 0 0 0 2 C16orf45 chr16:15661913 5'GT 15661913 Upstream 9bp
chr11 64064611 64064611 1 + C T STAD 64064608 + 64064588 64064628 41 CAGGCTATGGCAATGTGGCCCTGCGCACAGATGCCGGGCGC CAGGCTATGGCAATGTGGCCCTGTGCACAGATGCCGGGCGC < 41bp 0.703994940150649 0.494325734167767 0.17923996 0.21331277 prediction 0.407989880301298 Functional Loss - KCNK4 ENSG00000182450 CDS Human protein_coding chr11:64064608 chr11:64064611 nonsynonymous SNV 0.407 2 24 hm5C_associated_SNPs_95204 0 0 0 0 1 KCNK4 chr11:64064591 3'AG 64064591 Downstream 21bp
chr12 27841326 27841326 1 + C T LUSC 27841324 + 27841304 27841344 41 TGGCAGAATATGCGCCCAATCTCAGAGGCAGTGGTGTCCAT TGGCAGAATATGCGCCCAATCTTAGAGGCAGTGGTGTCCAT < 41bp 0.703989686468219 0.404474632851015 0.11176965 0.17362204 prediction 0.407979372936438 Functional Loss - PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27841324 chr12:27841326 synonymous SNV . 0 23 hm5C_associated_SNPs_95208 0 0 1 0 2 PPFIBP1 chr12:27841231 3'AG 27841231 Downstream 96bp
chr12 27841326 27841326 1 + C T LUSC 27841324 + 27841304 27841344 41 TGGCAGAATATGCGCCCAATCTCAGAGGCAGTGGTGTCCAT TGGCAGAATATGCGCCCAATCTTAGAGGCAGTGGTGTCCAT < 41bp 0.703989686468219 0.404474632851015 0.11176965 0.17362204 prediction 0.407979372936438 Functional Loss - PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27841324 chr12:27841326 synonymous SNV . 0 23 hm5C_associated_SNPs_95208 0 0 1 0 2 PPFIBP1 chr12:27841356 5'GT 27841356 Upstream 31bp
chr12 48134543 48134543 1 - C T SKCM 48134546 - 48134526 48134566 41 GGGATGTCACCACCGCCAACCTGGAGCGCTTCATGCGCCGC GGGATGTCACCACCGCCAACCTGAAGCGCTTCATGCGCCGC < 41bp 0.803721974531653 0.599733743725621 0.91698205 0.9109472 prediction 0.407976461612064 Functional Loss - RAPGEF3 ENSG00000079337 CDS Human protein_coding chr12:48134546 chr12:48134543 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_95212 0 0 0 0 1 RAPGEF3 chr12:48134606 3'AG 48134606 Downstream 64bp
chr17 35297914 35297914 1 + G A rs111571482 35297911 + 35297891 35297931 41 GTCCTTTCCCTCTTAGCCACCACGGGCAGTGACCCCAGTTT GTCCTTTCCCTCTTAGCCACCACAGGCAGTGACCCCAGTTT < 41bp 0.70398690846081 0.45035435904536 0.27961212 0.22574306 prediction 0.40797381692162 Functional Loss - LHX1 ENSG00000132130 CDS Human other chr17:35297911 chr17:35297914 synonymous SNV . 0 24 hm5C_associated_SNPs_95214 0 0 0 0 1 LHX1 chr17:35297907 3'AG 35297907 Downstream 8bp
chr17 35297912 35297912 1 + A C KIRP 35297911 + 35297891 35297931 41 GTCCTTTCCCTCTTAGCCACCACGGGCAGTGACCCCAGTTT GTCCTTTCCCTCTTAGCCACCCCGGGCAGTGACCCCAGTTT < 41bp 0.70398690846081 0.430562621277499 0.27961212 0.1720916 prediction 0.40797381692162 Functional Loss - LHX1 ENSG00000132130 CDS Human other chr17:35297911 chr17:35297912 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_95215 0 0 0 0 1 LHX1 chr17:35297907 3'AG 35297907 Downstream 6bp
chr12 52282414 52282414 1 + G T LUSC 52282411 + 52282391 52282431 41 CCTGCCTGGAAGAGGAAGAGCTGGCATTGCACAGGAGACGG CCTGCCTGGAAGAGGAAGAGCTGTCATTGCACAGGAGACGG < 41bp 0.703984402872776 0.294715744874549 0.38600147 0.261576 prediction 0.407968805745552 Functional Loss - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52282411 chr12:52282414 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_95217 0 0 0 0 1 ANKRD33 chr12:52282352 3'AG 52282352 Downstream 63bp
chr1 155582320 155582320 1 + C T GBM 155582317 + 155582297 155582337 41 CCTTGGGTGGGAGCCTGGGCCTGCGACCCGAGCCACCTGTC CCTTGGGTGGGAGCCTGGGCCTGTGACCCGAGCCACCTGTC < 41bp 0.762368691345423 0.55838551866636 0.3253218 0.376226 prediction 0.407966345358126 Functional Loss - MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582317 chr1:155582320 stopgain 0.077 0 24 hm5C_associated_SNPs_95220 0 0 1 0 1 MSTO1 chr1:155582361 5'GT 155582361 Upstream 42bp
chr19 55594785 55594785 1 + C T UCEC 55594783 + 55594763 55594803 41 AGGAGGGACCCCCATACAGACCCGAGTTCTTCAGCGGCTGG AGGAGGGACCCCCATACAGACCTGAGTTCTTCAGCGGCTGG < 41bp 0.703982661558253 0.430604106699545 0.24132323 0.21148008 prediction 0.407965323116505 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55594783 chr19:55594785 synonymous SNV . 0 23 hm5C_associated_SNPs_95221 0 0 0 0 1 EPS8L1 chr19:55594746 3'AG 55594746 Downstream 40bp
chr12 8290778 8290778 1 + C T LUSC 8290775 + 8290755 8290795 41 CCCAGTGATCCCAATGAGCGCTGCGTTGTGCTAAATTTTCG CCCAGTGATCCCAATGAGCGCTGTGTTGTGCTAAATTTTCG < 41bp 0.703979212357868 0.492998019372036 0.08707273 0.123541206 prediction 0.407958424715736 Functional Loss - CLEC4A ENSG00000111729 CDS Human protein_coding chr12:8290775 chr12:8290778 synonymous SNV . 0 24 hm5C_associated_SNPs_95223 0 0 0 0 1 CLEC4A chr12:8290736 3'AG 8290736 Downstream 43bp
chr13 70713404 70713404 1 + G T UCEC 70713400 + 70713380 70713420 41 TTTCTGACTCCCAGCTTCCACGGAGAGATTAACTCTGTTGG TTTCTGACTCCCAGCTTCCACGGATAGATTAACTCTGTTGG < 41bp 0.703978032728084 0.498789415707012 0.80640715 0.24285093 prediction 0.407956065456168 Functional Loss - ATXN8OS ENSG00000230223 ncRNA_exonic Human antisense chr13:70713400 chr13:70713404 . . 0 25 hm5C_associated_SNPs_95224 0 0 0 1 1 ATXN8OS chr13:70713373 3'AG 70713373 Downstream 32bp
chr19 14815982 14815982 1 + G A COAD 14815979 + 14815959 14815999 41 CCGCCTTGGTCTCTGGGATGCACGGTAAGCCTGGGAGAGGT CCGCCTTGGTCTCTGGGATGCACAGTAAGCCTGGGAGAGGT < 41bp 0.817246381131783 0.613269927406094 0.85113275 0.6997295 prediction 0.407952907451379 Functional Loss - ZNF333 ENSG00000160961 CDS Human protein_coding chr19:14815979 chr19:14815982 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_95229 0 0 1 0 1 ZNF333 chr19:14815982 5'GT 14815982 Upstream 1bp
chr10 118364948 118364948 1 + T C LGG 118364947 + 118364927 118364967 41 CCTATGAGTTTGATGCAAAGCTGGATGTTGGAACAATTGAG CCTATGAGTTTGATGCAAAGCCGGATGTTGGAACAATTGAG < 41bp 0.818027521928233 0.614054050294485 0.17471269 0.5205685 prediction 0.407946943267496 Functional Loss - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118364947 chr10:118364948 nonsynonymous SNV 0.948 2 22 hm5C_associated_SNPs_95231 0 0 0 0 1 PNLIPRP1 chr10:118364898 3'AG 118364898 Downstream 51bp
chr20 42232898 42232898 1 + G T UCEC 42232896 + 42232876 42232916 41 GTTTCCAGTGGAGTCTTGAACAGGTAAGCATGTTGAAAGCA GTTTCCAGTGGAGTCTTGAACATGTAAGCATGTTGAAAGCA < 41bp 0.703973301952435 0.354716892938922 0.9051157 0.15198174 prediction 0.407946603904869 Functional Loss - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42232896 chr20:42232898 nonsynonymous SNV 0.981 4 23 hm5C_associated_SNPs_95232 0 0 0 0 2 IFT52 chr20:42232823 3'AG 42232823 Downstream 76bp
chr20 42232898 42232898 1 + G T UCEC 42232896 + 42232876 42232916 41 GTTTCCAGTGGAGTCTTGAACAGGTAAGCATGTTGAAAGCA GTTTCCAGTGGAGTCTTGAACATGTAAGCATGTTGAAAGCA < 41bp 0.703973301952435 0.354716892938922 0.9051157 0.15198174 prediction 0.407946603904869 Functional Loss - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42232896 chr20:42232898 nonsynonymous SNV 0.981 4 23 hm5C_associated_SNPs_95232 0 0 0 0 2 IFT52 chr20:42232898 5'GT 42232898 Upstream 1bp
chr5 1212596 1212596 1 + G T SKCM 1212593 + 1212573 1212613 41 ATCCGCGGCATCGAGACCACCGGGAAGGTACTGCATGGGCC ATCCGCGGCATCGAGACCACCGGTAAGGTACTGCATGGGCC < 41bp 0.935401800669412 0.731429198954504 0.9011289 0.2492626 prediction 0.407945203429814 Functional Loss - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1212593 chr5:1212596 stopgain . 0 24 hm5C_associated_SNPs_95233 0 0 0 0 1 SLC6A19 chr5:1212599 5'GT 1212599 Upstream 4bp
chr20 58558110 58558110 1 + G T LUSC 58558107 + 58558087 58558127 41 AGGAATTTAACATCACTGTGCAAGAAAACCAATCTGCAGGT AGGAATTTAACATCACTGTGCAATAAAACCAATCTGCAGGT < 41bp 0.703972392180899 0.310092111958727 0.3684138 0.3846333 prediction 0.407944784361799 Functional Loss - CDH26 ENSG00000124215 CDS Human protein_coding chr20:58558107 chr20:58558110 stopgain 0.410 0 24 hm5C_associated_SNPs_95234 0 0 0 1 1 CDH26 chr20:58558125 5'GT 58558125 Upstream 16bp
chr3 134266217 134266217 1 + C T LUSC 134266215 + 134266195 134266235 41 GGCAGAAAAGAAGTACACCTCTCAAGGGCAGGGGGACTTAG GGCAGAAAAGAAGTACACCTCTTAAGGGCAGGGGGACTTAG < 41bp 0.7039694733136 0.404906561549661 0.46969384 0.36709857 prediction 0.407938946627201 Functional Loss - CEP63 ENSG00000182923 CDS Human protein_coding chr3:134266215 chr3:134266217 stopgain 0.195 0 23 hm5C_associated_SNPs_95235 0 0 0 0 2 CEP63 chr3:134266177 3'AG 134266177 Downstream 41bp
chr3 134266217 134266217 1 + C T LUSC 134266215 + 134266195 134266235 41 GGCAGAAAAGAAGTACACCTCTCAAGGGCAGGGGGACTTAG GGCAGAAAAGAAGTACACCTCTTAAGGGCAGGGGGACTTAG < 41bp 0.7039694733136 0.404906561549661 0.46969384 0.36709857 prediction 0.407938946627201 Functional Loss - CEP63 ENSG00000182923 CDS Human protein_coding chr3:134266215 chr3:134266217 stopgain 0.195 0 23 hm5C_associated_SNPs_95235 0 0 0 0 2 CEP63 chr3:134266314 5'GT 134266314 Upstream 98bp
chr11 22363242 22363242 1 + C T CESC 22363239 + 22363219 22363259 41 GGCCTGGGCTTCTGCATCTCCTTCGGTATCCGCTGCAACCT GGCCTGGGCTTCTGCATCTCCTTTGGTATCCGCTGCAACCT < 41bp 0.733805003416561 0.529835546132798 0.082773775 0.10561171 prediction 0.407938914567526 Functional Loss - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22363239 chr11:22363242 synonymous SNV . 0 24 hm5C_associated_SNPs_95236 0 0 0 0 1 SLC17A6 chr11:22363326 5'GT 22363326 Upstream 85bp
chr19 56189960 56189960 1 + G A LUAD 56189957 + 56189937 56189977 41 CGCCCCATCTCTCCACGCATCGGGGCCCTGTGCCCCTTGCT CGCCCCATCTCTCCACGCATCGGAGCCCTGTGCCCCTTGCT < 41bp 0.84464017565058 0.640671476428185 0.9615422 0.9492541 prediction 0.407937398444788 Functional Loss - EPN1 ENSG00000063245 CDS Human protein_coding chr19:56189957 chr19:56189960 synonymous SNV . 0 24 hm5C_associated_SNPs_95237 0 0 1 0 1 EPN1 chr19:56189893 3'AG 56189893 Downstream 68bp
chr12 122614650 122614650 1 + C T COAD 122614648 + 122614628 122614668 41 GCCGGTGGCCTGGCCCAATCCCCGGGAAATAGGTAACCCAA GCCGGTGGCCTGGCCCAATCCCTGGGAAATAGGTAACCCAA < 41bp 0.703967516479603 0.418887819851447 0.4243896 0.110924274 prediction 0.407935032959206 Functional Loss - MLXIP ENSG00000175727 CDS Human protein_coding chr12:122614648 chr12:122614650 nonsynonymous SNV 0.978 4 23 hm5C_associated_SNPs_95238 0 0 1 0 1 MLXIP chr12:122614659 5'GT 122614659 Upstream 10bp
chr2 86361498 86361498 1 + G A UCEC 86361495 + 86361475 86361515 41 TGGCAAGGGACAAGCACCCACCAGAGGTAGGCCTGAAACTC TGGCAAGGGACAAGCACCCACCAAAGGTAGGCCTGAAACTC < 41bp 0.703964032634414 0.458245376324446 0.5474645 0.1494928 prediction 0.407928065268829 Functional Loss - PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86361495 chr2:86361498 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_95240 0 0 1 0 2 PTCD3 chr2:86361415 3'AG 86361415 Downstream 84bp
chr2 86361498 86361498 1 + G A UCEC 86361495 + 86361475 86361515 41 TGGCAAGGGACAAGCACCCACCAGAGGTAGGCCTGAAACTC TGGCAAGGGACAAGCACCCACCAAAGGTAGGCCTGAAACTC < 41bp 0.703964032634414 0.458245376324446 0.5474645 0.1494928 prediction 0.407928065268829 Functional Loss - PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86361495 chr2:86361498 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_95240 0 0 1 0 2 PTCD3 chr2:86361500 5'GT 86361500 Upstream 3bp
chr1 112299299 112299299 1 + G A BLCA 112299296 + 112299276 112299316 41 GTTCAAGCTAAATCTGGCACCGGGAAAACCTGTGTGTTCTC GTTCAAGCTAAATCTGGCACCGGAAAAACCTGTGTGTTCTC < 41bp 0.772193011313554 0.568232371656728 0.8870119 0.70157063 prediction 0.407921279313652 Functional Loss - DDX20 ENSG00000064703 CDS Human protein_coding chr1:112299296 chr1:112299299 synonymous SNV . 0 24 hm5C_associated_SNPs_95242 0 0 1 0 2 DDX20 chr1:112299268 3'AG 112299268 Downstream 32bp
chr1 112299299 112299299 1 + G A BLCA 112299296 + 112299276 112299316 41 GTTCAAGCTAAATCTGGCACCGGGAAAACCTGTGTGTTCTC GTTCAAGCTAAATCTGGCACCGGAAAAACCTGTGTGTTCTC < 41bp 0.772193011313554 0.568232371656728 0.8870119 0.70157063 prediction 0.407921279313652 Functional Loss - DDX20 ENSG00000064703 CDS Human protein_coding chr1:112299296 chr1:112299299 synonymous SNV . 0 24 hm5C_associated_SNPs_95242 0 0 1 0 2 DDX20 chr1:112299362 5'GT 112299362 Upstream 64bp
chr8 86356320 86356320 1 + C T COAD 86356317 + 86356297 86356337 41 CTTTTAAAGAAGCCCTGAAGCAGCGCGATGGGATCGCTGTG CTTTTAAAGAAGCCCTGAAGCAGTGCGATGGGATCGCTGTG < 41bp 0.754069535525333 0.550109862513812 0.8579141 0.35314408 prediction 0.407919346023042 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86356317 chr8:86356320 nonsynonymous SNV 0.628 0 24 hm5C_associated_SNPs_95243 0 0 0 0 2 CA3 chr8:86356263 3'AG 86356263 Downstream 58bp
chr8 86356320 86356320 1 + C T COAD 86356317 + 86356297 86356337 41 CTTTTAAAGAAGCCCTGAAGCAGCGCGATGGGATCGCTGTG CTTTTAAAGAAGCCCTGAAGCAGTGCGATGGGATCGCTGTG < 41bp 0.754069535525333 0.550109862513812 0.8579141 0.35314408 prediction 0.407919346023042 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86356317 chr8:86356320 nonsynonymous SNV 0.628 0 24 hm5C_associated_SNPs_95243 0 0 0 0 2 CA3 chr8:86356355 5'GT 86356355 Upstream 36bp
chr18 2913121 2913121 1 + G A UCEC 2913118 + 2913098 2913138 41 TGATCACGGCCACCCTCACCCCCGAGAGAGACGCCTACGTG TGATCACGGCCACCCTCACCCCCAAGAGAGACGCCTACGTG < 41bp 0.81522769751719 0.611268542982102 0.04241261 0.042177856 prediction 0.407918309070175 Functional Loss - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2913118 chr18:2913121 nonsynonymous SNV 0.777 4 24 hm5C_associated_SNPs_95244 0 0 0 0 1 EMILIN2 chr18:2913065 3'AG 2913065 Downstream 57bp
chr10 101577097 101577097 1 + G A COAD 101577094 + 101577074 101577114 41 GCCTATGTCCCACAGCAGTCCTGGATTCAGAATGGCACCAT GCCTATGTCCCACAGCAGTCCTGAATTCAGAATGGCACCAT < 41bp 0.80932526481263 0.605370799273576 0.1685395 0.13549781 prediction 0.407908931078107 Functional Loss - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101577094 chr10:101577097 stopgain 1.000 1 24 hm5C_associated_SNPs_95250 0 0 1 0 1 ABCC2 chr10:101577065 3'AG 101577065 Downstream 33bp
chr13 26542775 26542775 1 + G A SKCM 26542772 + 26542752 26542792 41 GCAGGAGCTGGAAACCAAGTCTCGAGTCCTGGGAAAAGCGG GCAGGAGCTGGAAACCAAGTCTCAAGTCCTGGGAAAAGCGG < 41bp 0.727525051712052 0.52357170018591 0.8845185 0.14327797 prediction 0.407906703052285 Functional Loss - ATP8A2 ENSG00000132932 CDS Human protein_coding chr13:26542772 chr13:26542775 nonsynonymous SNV 0.339 1 24 hm5C_associated_SNPs_95251 0 0 0 0 2 ATP8A2 chr13:26542713 3'AG 26542713 Downstream 63bp
chr13 26542775 26542775 1 + G A SKCM 26542772 + 26542752 26542792 41 GCAGGAGCTGGAAACCAAGTCTCGAGTCCTGGGAAAAGCGG GCAGGAGCTGGAAACCAAGTCTCAAGTCCTGGGAAAAGCGG < 41bp 0.727525051712052 0.52357170018591 0.8845185 0.14327797 prediction 0.407906703052285 Functional Loss - ATP8A2 ENSG00000132932 CDS Human protein_coding chr13:26542772 chr13:26542775 nonsynonymous SNV 0.339 1 24 hm5C_associated_SNPs_95251 0 0 0 0 2 ATP8A2 chr13:26542817 5'GT 26542817 Upstream 43bp
chr7 116403173 116403173 1 + C T UCEC 116403170 + 116403150 116403190 41 CTTCCCTGCAACAGCTGAATCTGCAACTCCCCCTGAAAACC CTTCCCTGCAACAGCTGAATCTGTAACTCCCCCTGAAAACC < 41bp 0.703951178796774 0.487880192992919 0.04971105 0.07255304 prediction 0.407902357593548 Functional Loss - MET ENSG00000105976 CDS Human protein_coding chr7:116403170 chr7:116403173 stopgain 1.000 1 24 hm5C_associated_SNPs_95253 0 0 1 0 1 MET chr7:116403104 3'AG 116403104 Downstream 70bp
chr2 106690446 106690446 1 + C T LUSC 106690443 + 106690423 106690463 41 GGCAGCTGTGGGACCGGACTCGGCCCGAGGTGCAGCAGTGG GGCAGCTGTGGGACCGGACTCGGTCCGAGGTGCAGCAGTGG < 41bp 0.746051739984887 0.542101244057778 0.8342166 0.4172902 prediction 0.407900991854218 Functional Loss - C2orf40 ENSG00000119147 CDS Human protein_coding chr2:106690443 chr2:106690446 nonsynonymous SNV 0.437 3 24 hm5C_associated_SNPs_95254 0 0 0 0 1 C2orf40 chr2:106690499 5'GT 106690499 Upstream 54bp
chr12 6952582 6952582 1 + C T LUAD 6952579 + 6952559 6952599 41 CATGACCTGTGCCTATGCCCCATCAGGGAACTTTGTGGCAT CATGACCTGTGCCTATGCCCCATTAGGGAACTTTGTGGCAT < 41bp 0.703945935303674 0.48106740121043 0.099030614 0.046855062 prediction 0.407891870607349 Functional Loss - GNB3 ENSG00000111664 CDS Human protein_coding chr12:6952579 chr12:6952582 nonsynonymous SNV 0.982 2 24 hm5C_associated_SNPs_95256 0 0 1 0 1 GNB3 chr12:6952527 3'AG 6952527 Downstream 56bp
chr4 1808309 1808309 1 + G A COAD 1808306 + 1808286 1808326 41 GTCCTGCTCTGGGAGATCTTCACGCTGGGGGGCTCCCCGTA GTCCTGCTCTGGGAGATCTTCACACTGGGGGGCTCCCCGTA < 41bp 0.703945552498141 0.448168393339212 0.80494034 0.7692753 prediction 0.407891104996282 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1808306 chr4:1808309 nonsynonymous SNV 0.726 1 24 hm5C_associated_SNPs_95257 0 0 1 0 1 FGFR3 chr4:1808273 3'AG 1808273 Downstream 37bp
chr1 225974630 225974630 1 + G A UCEC 225974627 + 225974607 225974647 41 TGATCATAGCTCACTGCATCCTCGACCTCCTGGGCTCAAGC TGATCATAGCTCACTGCATCCTCAACCTCCTGGGCTCAAGC < 41bp 0.703941075669949 0.465062922029321 0.2716681 0.13983285 prediction 0.407882151339899 Functional Loss - SRP9 ENSG00000143742 CDS Human protein_coding chr1:225974627 chr1:225974630 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_95260 0 0 1 0 2 SRP9 chr1:225974564 3'AG 225974564 Downstream 67bp
chr1 225974630 225974630 1 + G A UCEC 225974627 + 225974607 225974647 41 TGATCATAGCTCACTGCATCCTCGACCTCCTGGGCTCAAGC TGATCATAGCTCACTGCATCCTCAACCTCCTGGGCTCAAGC < 41bp 0.703941075669949 0.465062922029321 0.2716681 0.13983285 prediction 0.407882151339899 Functional Loss - SRP9 ENSG00000143742 CDS Human protein_coding chr1:225974627 chr1:225974630 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_95260 0 0 1 0 2 SRP9 chr1:225974687 5'GT 225974687 Upstream 58bp
chr20 39984644 39984644 1 + G T UCEC 39984641 + 39984621 39984661 41 CCACCCTCCACTCCTACCTACAAGAAGTCCCTCCGCCTCTC CCACCCTCCACTCCTACCTACAATAAGTCCCTCCGCCTCTC < 41bp 0.703938538350822 0.289284279077246 0.16576624 0.041140407 prediction 0.407877076701644 Functional Loss - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39984641 chr20:39984644 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_95261 0 0 1 0 1 LPIN3 chr20:39984674 5'GT 39984674 Upstream 31bp
chr1 206653396 206653396 1 + G T LUSC 206653392 + 206653372 206653412 41 TGGGCGCCGGCTACCAGGCCCTGCGGCTGGCACGGGCCCTG TGGGCGCCGGCTACCAGGCCCTGCTGCTGGCACGGGCCCTG < 41bp 0.738266380316834 0.534331311714699 0.28496563 0.085069895 prediction 0.407870137204269 Functional Loss - IKBKE ENSG00000143466 CDS Human other chr1:206653392 chr1:206653396 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_95266 0 0 0 0 2 IKBKE chr1:206653365 3'AG 206653365 Downstream 32bp
chr1 206653396 206653396 1 + G T LUSC 206653392 + 206653372 206653412 41 TGGGCGCCGGCTACCAGGCCCTGCGGCTGGCACGGGCCCTG TGGGCGCCGGCTACCAGGCCCTGCTGCTGGCACGGGCCCTG < 41bp 0.738266380316834 0.534331311714699 0.28496563 0.085069895 prediction 0.407870137204269 Functional Loss - IKBKE ENSG00000143466 CDS Human other chr1:206653392 chr1:206653396 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_95266 0 0 0 0 2 IKBKE chr1:206653456 5'GT 206653456 Upstream 61bp
chr3 38180462 38180462 1 + G C LUAD 38180461 + 38180441 38180481 41 GCCTCTGTAGGCCGACTGCTCGAGCTGCTTACCAAGCTGGG GCCTCTGTAGGCCGACTGCTCCAGCTGCTTACCAAGCTGGG < 41bp 0.703934444908542 0.381150565620721 0.9012064 0.8881134 prediction 0.407868889817084 Functional Loss - MYD88 ENSG00000172936 CDS Human protein_coding chr3:38180461 chr3:38180462 nonsynonymous SNV 0.137 3 22 hm5C_associated_SNPs_95268 0 0 1 0 1 MYD88 chr3:38180519 5'GT 38180519 Upstream 58bp
chr4 3449273 3449273 1 + G A BLCA 3449270 + 3449250 3449290 41 GGCCAGCACTTCTTCAACCGCACGACGGACGTGACGCAGAC GGCCAGCACTTCTTCAACCGCACAACGGACGTGACGCAGAC < 41bp 0.825258056937498 0.62132379419824 0.138836 0.12176868 prediction 0.407868525478518 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3449270 chr4:3449273 synonymous SNV . 0 24 hm5C_associated_SNPs_95269 0 0 1 0 2 HGFAC chr4:3449219 3'AG 3449219 Downstream 55bp
chr4 3449273 3449273 1 + G A BLCA 3449270 + 3449250 3449290 41 GGCCAGCACTTCTTCAACCGCACGACGGACGTGACGCAGAC GGCCAGCACTTCTTCAACCGCACAACGGACGTGACGCAGAC < 41bp 0.825258056937498 0.62132379419824 0.138836 0.12176868 prediction 0.407868525478518 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3449270 chr4:3449273 synonymous SNV . 0 24 hm5C_associated_SNPs_95269 0 0 1 0 2 HGFAC chr4:3449358 5'GT 3449358 Upstream 86bp
chr14 69994595 69994595 1 + C T LIHC 69994592 + 69994572 69994612 41 ACATCCATAAGGCAGCCACTCGCCGCATCAAGAGCTGCCGC ACATCCATAAGGCAGCCACTCGCTGCATCAAGAGCTGCCGC < 41bp 0.71657010372928 0.512640612928791 0.06464696 0.028995752 prediction 0.407858981600978 Functional Loss - PLEKHD1 ENSG00000175985 CDS Human protein_coding chr14:69994592 chr14:69994595 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_95273 0 0 0 0 1 PLEKHD1 chr14:69994649 5'GT 69994649 Upstream 55bp
chr2 170885923 170885923 1 + G A LGG 170885920 + 170885900 170885940 41 ATTGACTCTGAGTATAATCCCTGGAGAAAGCTCACCCAGTT ATTGACTCTGAGTATAATCCCTGAAGAAAGCTCACCCAGTT < 41bp 0.770366162863946 0.566437405673624 0.23368785 0.046007246 prediction 0.407857514380645 Functional Loss - UBR3 ENSG00000144357 CDS Human protein_coding chr2:170885920 chr2:170885923 stopgain 1.000 1 24 hm5C_associated_SNPs_95274 0 0 1 0 3 UBR3 chr2:170885856 3'AG 170885856 Downstream 68bp
chr2 170885923 170885923 1 + G A LGG 170885920 + 170885900 170885940 41 ATTGACTCTGAGTATAATCCCTGGAGAAAGCTCACCCAGTT ATTGACTCTGAGTATAATCCCTGAAGAAAGCTCACCCAGTT < 41bp 0.770366162863946 0.566437405673624 0.23368785 0.046007246 prediction 0.407857514380645 Functional Loss - UBR3 ENSG00000144357 CDS Human protein_coding chr2:170885920 chr2:170885923 stopgain 1.000 1 24 hm5C_associated_SNPs_95274 0 0 1 0 3 UBR3 chr2:170885861 3'AG 170885861 Downstream 63bp
chr2 170885923 170885923 1 + G A LGG 170885920 + 170885900 170885940 41 ATTGACTCTGAGTATAATCCCTGGAGAAAGCTCACCCAGTT ATTGACTCTGAGTATAATCCCTGAAGAAAGCTCACCCAGTT < 41bp 0.770366162863946 0.566437405673624 0.23368785 0.046007246 prediction 0.407857514380645 Functional Loss - UBR3 ENSG00000144357 CDS Human protein_coding chr2:170885920 chr2:170885923 stopgain 1.000 1 24 hm5C_associated_SNPs_95274 0 0 1 0 3 UBR3 chr2:170885958 5'GT 170885958 Upstream 36bp
chr9 72833372 72833372 1 - G A UCEC 72833375 - 72833355 72833395 41 ACTCAGCAGGCCAGTGCCCCCTCCATACATGTGGTAGAAAA ACTCAGCAGGCCAGTGCCCCCTCTATACATGTGGTAGAAAA < 41bp 0.802671963892961 0.598745172031725 0.96268976 0.92181396 prediction 0.407853583722473 Functional Loss - MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72833375 chr9:72833372 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_95275 0 0 0 0 1 MAMDC2 chr9:72833401 3'AG 72833401 Downstream 30bp
chr12 32761011 32761011 1 + G A LUAD 32761008 + 32760988 32761028 41 GGAAATTGCCTCCTGATTCCCTGGACTGGAATGATGCTAAA GGAAATTGCCTCCTGATTCCCTGAACTGGAATGATGCTAAA < 41bp 0.782603125667343 0.578676533764953 0.27553797 0.15433925 prediction 0.407853183804781 Functional Loss - FGD4 ENSG00000139132 CDS Human protein_coding chr12:32761008 chr12:32761011 nonsynonymous SNV 0.883 4 24 hm5C_associated_SNPs_95276 0 0 1 0 1 FGD4 chr12:32761029 5'GT 32761029 Upstream 19bp
chr1 111862872 111862872 1 + T C OV 111862871 + 111862851 111862891 41 TCAGCCCATTGAGCCAATAACTGCTGCTCCCAGTGGCAGCG TCAGCCCATTGAGCCAATAACCGCTGCTCCCAGTGGCAGCG < 41bp 0.78718654819354 0.583263023133677 0.12185767 0.35073638 prediction 0.407847050119726 Functional Loss - CHIA ENSG00000134216 CDS Human protein_coding chr1:111862871 chr1:111862872 synonymous SNV . 0 22 hm5C_associated_SNPs_95278 0 0 0 0 1 CHIA chr1:111862835 3'AG 111862835 Downstream 38bp
chr4 71660566 71660566 1 + C T LUAD 71660563 + 71660543 71660583 41 AAAGAAAGAAGATTACAAAACGACAGGAGCATCCCAGGAAG AAAGAAAGAAGATTACAAAACGATAGGAGCATCCCAGGAAG < 41bp 0.780850531032988 0.576928330048872 0.21519542 0.3346588 prediction 0.407844401968231 Functional Loss - RUFY3 ENSG00000018189 CDS Human protein_coding chr4:71660563 chr4:71660566 synonymous SNV . 0 24 hm5C_associated_SNPs_95280 0 0 0 0 2 RUFY3 chr4:71660512 3'AG 71660512 Downstream 55bp
chr4 71660566 71660566 1 + C T LUAD 71660563 + 71660543 71660583 41 AAAGAAAGAAGATTACAAAACGACAGGAGCATCCCAGGAAG AAAGAAAGAAGATTACAAAACGATAGGAGCATCCCAGGAAG < 41bp 0.780850531032988 0.576928330048872 0.21519542 0.3346588 prediction 0.407844401968231 Functional Loss - RUFY3 ENSG00000018189 CDS Human protein_coding chr4:71660563 chr4:71660566 synonymous SNV . 0 24 hm5C_associated_SNPs_95280 0 0 0 0 2 RUFY3 chr4:71660611 5'GT 71660611 Upstream 46bp
chr16 81990413 81990413 1 + G T rs527467208 81990411 + 81990391 81990431 41 AGAACTTGCGCAATGCCAACCGGGATGCCCTGGTTAAAGAG AGAACTTGCGCAATGCCAACCGTGATGCCCTGGTTAAAGAG < 41bp 0.703919564194874 0.36431346800573 0.74505377 0.03157386 prediction 0.407839128389749 Functional Loss - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81990411 chr16:81990413 synonymous SNV . 0 23 hm5C_associated_SNPs_95283 0 0 0 0 1 PLCG2 chr16:81990484 5'GT 81990484 Upstream 72bp
chr6 44198386 44198386 1 + T C THCA 44198385 + 44198365 44198405 41 TTTTGACCATCATCTGTTACCTGGGCCTGCCCCGCCTGGTG TTTTGACCATCATCTGTTACCCGGGCCTGCCCCGCCTGGTG < 41bp 0.798755246987395 0.594835687520488 0.3839305 0.89520764 prediction 0.407839118933815 Functional Loss - SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44198385 chr6:44198386 nonsynonymous SNV 0.971 4 22 hm5C_associated_SNPs_95284 0 0 1 0 2 SLC29A1 chr6:44198305 3'AG 44198305 Downstream 82bp
chr6 44198386 44198386 1 + T C THCA 44198385 + 44198365 44198405 41 TTTTGACCATCATCTGTTACCTGGGCCTGCCCCGCCTGGTG TTTTGACCATCATCTGTTACCCGGGCCTGCCCCGCCTGGTG < 41bp 0.798755246987395 0.594835687520488 0.3839305 0.89520764 prediction 0.407839118933815 Functional Loss - SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44198385 chr6:44198386 nonsynonymous SNV 0.971 4 22 hm5C_associated_SNPs_95284 0 0 1 0 2 SLC29A1 chr6:44198402 5'GT 44198402 Upstream 17bp
chr6 159316291 159316291 1 + G C rs183794014 159316290 + 159316270 159316310 41 GAAGAACGAGGAACACTGCCCGGGGAGTTTCTTCCTCTGCA GAAGAACGAGGAACACTGCCCCGGGAGTTTCTTCCTCTGCA < 41bp 0.896082277106052 0.692164288896671 0.8941129 0.8883995 prediction 0.407835976418762 Functional Loss - C6orf99 ENSG00000203711 CDS Human lincRNA chr6:159316290 chr6:159316291 synonymous SNV . 0 22 hm5C_associated_SNPs_95286 0 0 0 0 1 C6orf99 chr6:159316253 3'AG 159316253 Downstream 39bp
chr6 42585019 42585019 1 + C T DLBC 42585017 + 42584997 42585037 41 GAGATTTTATGGAGGATGATCACGAGCGAGCAGTGTCGGTG GAGATTTTATGGAGGATGATCATGAGCGAGCAGTGTCGGTG < 41bp 0.703916655401451 0.419139022118057 0.47356516 0.5410136 prediction 0.407833310802902 Functional Loss - UBR2 ENSG00000024048 CDS Human protein_coding chr6:42585017 chr6:42585019 synonymous SNV . 0 23 hm5C_associated_SNPs_95288 0 0 1 0 2 UBR2 chr6:42584978 3'AG 42584978 Downstream 42bp
chr6 42585019 42585019 1 + C T DLBC 42585017 + 42584997 42585037 41 GAGATTTTATGGAGGATGATCACGAGCGAGCAGTGTCGGTG GAGATTTTATGGAGGATGATCATGAGCGAGCAGTGTCGGTG < 41bp 0.703916655401451 0.419139022118057 0.47356516 0.5410136 prediction 0.407833310802902 Functional Loss - UBR2 ENSG00000024048 CDS Human protein_coding chr6:42585017 chr6:42585019 synonymous SNV . 0 23 hm5C_associated_SNPs_95288 0 0 1 0 2 UBR2 chr6:42585076 5'GT 42585076 Upstream 58bp
chr19 49841984 49841984 1 + C T COAD 49841982 + 49841962 49842002 41 CTGCTGCGGCTGGCACTACCCGCAGGACTGGTTCCAAGTCC CTGCTGCGGCTGGCACTACCCGTAGGACTGGTTCCAAGTCC < 41bp 0.851132363869828 0.64721829466088 0.3491762 0.4356206 prediction 0.407828138417896 Functional Loss - CD37 ENSG00000104894 CDS Human protein_coding chr19:49841982 chr19:49841984 stopgain 0.841 0 23 hm5C_associated_SNPs_95291 0 0 1 0 1 CD37 chr19:49841957 3'AG 49841957 Downstream 28bp
chr16 19179983 19179983 1 + G A rs577086092 19179980 + 19179960 19180000 41 CGGGCGAAAATGGCGTACATCCAGGTAGGGCTGAGGCTGGG CGGGCGAAAATGGCGTACATCCAAGTAGGGCTGAGGCTGGG < 41bp 0.802314280163221 0.598400675628289 0.81404316 0.5786159 prediction 0.407827209069863 Functional Loss - SYT17 ENSG00000103528 CDS Human protein_coding chr16:19179980 chr16:19179983 synonymous SNV . 0 24 hm5C_associated_SNPs_95292 0 0 0 0 1 SYT17 chr16:19179983 5'GT 19179983 Upstream 1bp
chr19 51729309 51729309 1 + G C LUSC 51729308 + 51729288 51729328 41 CGCTGGAGCTGGTGTGACTACGGAGAGAACCATCCAGCTCA CGCTGGAGCTGGTGTGACTACCGAGAGAACCATCCAGCTCA < 41bp 0.889330387886748 0.685418614767674 0.80833197 0.72756386 prediction 0.407823546238147 Functional Loss - CD33 ENSG00000105383 CDS Human protein_coding chr19:51729308 chr19:51729309 synonymous SNV . 0 22 hm5C_associated_SNPs_95293 0 0 0 0 1 CD33 chr19:51729337 5'GT 51729337 Upstream 29bp
chr17 37901727 37901727 1 + G A SKCM 37901724 + 37901704 37901744 41 CATGGACTTCTCTGGCCATGCTGGGCGTGTCATTGAGAACC CATGGACTTCTCTGGCCATGCTGAGCGTGTCATTGAGAACC < 41bp 0.832807255883441 0.628901515813258 0.81643516 0.37097594 prediction 0.407811480140366 Functional Loss - GRB7 ENSG00000141738 CDS Human protein_coding chr17:37901724 chr17:37901727 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_95299 0 0 1 0 1 GRB7 chr17:37901675 3'AG 37901675 Downstream 53bp
chr1 203740605 203740605 1 + G A UCEC 203740602 + 203740582 203740622 41 TGCCTTGGCGACAGGAAGACCTGGGTAGGTTTTTCCTTCTA TGCCTTGGCGACAGGAAGACCTGAGTAGGTTTTTCCTTCTA < 41bp 0.80777760405069 0.60387236134638 0.18284625 0.062774 prediction 0.40781048540862 Functional Loss - LAX1 ENSG00000122188 CDS Human protein_coding chr1:203740602 chr1:203740605 nonsynonymous SNV 0.333 4 24 hm5C_associated_SNPs_95300 0 0 0 0 1 LAX1 chr1:203740605 5'GT 203740605 Upstream 1bp
chr4 110754317 110754317 1 + C T LUSC 110754314 + 110754294 110754334 41 GGTATGATAAGTATTATCAGCAACATAATAGTTCTGGGCAT GGTATGATAAGTATTATCAGCAATATAATAGTTCTGGGCAT < 41bp 0.72411212618327 0.520208214452894 0.26248646 0.1155428 prediction 0.407807823460752 Functional Loss - RRH ENSG00000180245 CDS Human protein_coding chr4:110754314 chr4:110754317 synonymous SNV . 0 24 hm5C_associated_SNPs_95301 0 0 0 0 1 RRH chr4:110754295 3'AG 110754295 Downstream 23bp
chr20 4680047 4680047 1 + C T SKCM 4680045 + 4680025 4680065 41 CGGTGGTGGCTGGGGGCAGCCTCATGGTGGTGGCTGGGGGC CGGTGGTGGCTGGGGGCAGCCTTATGGTGGTGGCTGGGGGC < 41bp 0.851609317855787 0.647707288433448 0.5171046 0.4288642 prediction 0.407804058844676 Functional Loss - PRNP ENSG00000171867 CDS Human protein_coding chr20:4680045 chr20:4680047 nonsynonymous SNV 0.993 3 23 hm5C_associated_SNPs_95303 0 0 1 0 1 PRNP chr20:4680125 5'GT 4680125 Upstream 79bp
chr20 37570639 37570639 1 + A T STAD 37570637 + 37570617 37570657 41 ATGGACGTGTTCACAGACATCGACATCTTCAGAGACCTGCA ATGGACGTGTTCACAGACATCGTCATCTTCAGAGACCTGCA < 41bp 0.703900376031337 0.49270323979166 0.057079077 0.07463688 prediction 0.407800752062675 Functional Loss - FAM83D ENSG00000101447 CDS Human protein_coding chr20:37570637 chr20:37570639 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_95304 0 0 1 0 1 FAM83D chr20:37570602 3'AG 37570602 Downstream 38bp
chr16 2579492 2579492 1 + C T rs142291569 2579489 + 2579469 2579509 41 GTCCCAGACTTCGTGGTGCTCGACGACTCCCTTCACGTCCA GTCCCAGACTTCGTGGTGCTCGATGACTCCCTTCACGTCCA < 41bp 0.712812742265869 0.508912782279635 0.15573755 0.090183794 prediction 0.407799919972469 Functional Loss - AMDHD2 ENSG00000162066 CDS Human protein_coding chr16:2579489 chr16:2579492 synonymous SNV . 0 24 hm5C_associated_SNPs_95305 0 0 1 0 2 AMDHD2 chr16:2579476 3'AG 2579476 Downstream 17bp
chr16 2579492 2579492 1 + C T rs142291569 2579489 + 2579469 2579509 41 GTCCCAGACTTCGTGGTGCTCGACGACTCCCTTCACGTCCA GTCCCAGACTTCGTGGTGCTCGATGACTCCCTTCACGTCCA < 41bp 0.712812742265869 0.508912782279635 0.15573755 0.090183794 prediction 0.407799919972469 Functional Loss - AMDHD2 ENSG00000162066 CDS Human protein_coding chr16:2579489 chr16:2579492 synonymous SNV . 0 24 hm5C_associated_SNPs_95305 0 0 1 0 2 AMDHD2 chr16:2579526 5'GT 2579526 Upstream 35bp
chr14 56755250 56755250 1 + C T LUAD 56755247 + 56755227 56755267 41 GAAGCCCAGATCACACAGAGCACCATATCCAGGTTCGCCTG GAAGCCCAGATCACACAGAGCACTATATCCAGGTTCGCCTG < 41bp 0.782526635709061 0.578626815573563 0.031731308 0.06123191 prediction 0.407799640270996 Functional Loss - PELI2 ENSG00000139946 CDS Human protein_coding chr14:56755247 chr14:56755250 synonymous SNV . 0 24 hm5C_associated_SNPs_95306 0 0 1 0 1 PELI2 chr14:56755155 3'AG 56755155 Downstream 96bp
chr19 18963017 18963017 1 + G T LIHC 18963013 + 18962993 18963033 41 AGGAGCCGCAGCATGTCCTCCTGCGGTACGAGGACGCCTAC AGGAGCCGCAGCATGTCCTCCTGCTGTACGAGGACGCCTAC < 41bp 0.703899149668916 0.492352561656252 0.5176657 0.33861202 prediction 0.407798299337832 Functional Loss - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18963013 chr19:18963017 nonsynonymous SNV 0.981 3 25 hm5C_associated_SNPs_95307 0 0 1 0 2 UPF1 chr19:18962944 3'AG 18962944 Downstream 74bp
chr19 18963017 18963017 1 + G T LIHC 18963013 + 18962993 18963033 41 AGGAGCCGCAGCATGTCCTCCTGCGGTACGAGGACGCCTAC AGGAGCCGCAGCATGTCCTCCTGCTGTACGAGGACGCCTAC < 41bp 0.703899149668916 0.492352561656252 0.5176657 0.33861202 prediction 0.407798299337832 Functional Loss - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18963013 chr19:18963017 nonsynonymous SNV 0.981 3 25 hm5C_associated_SNPs_95307 0 0 1 0 2 UPF1 chr19:18963105 5'GT 18963105 Upstream 89bp
chr17 56414948 56414948 1 + G A rs2285991 56414945 + 56414925 56414965 41 TCACCTCCACGTTCTGCACTCGGGGCCGAGGGAAGGGAGGC TCACCTCCACGTTCTGCACTCGGAGCCGAGGGAAGGGAGGC < 41bp 0.703898751439289 0.47656598716461 0.929213 0.90403867 prediction 0.407797502878578 Functional Loss - TSPOAP1-AS1 ENSG00000265148 ncRNA_exonic Human antisense chr17:56414945 chr17:56414948 . . 0 24 hm5C_associated_SNPs_95308 0 0 0 0 1 TSPOAP1-AS1 chr17:56415040 5'GT 56415040 Upstream 93bp
chr8 43046738 43046738 1 + C T rs200750044 43046735 + 43046715 43046755 41 CCTGCCAGTCCCTGGGTGCCCTACGTAAGCGAACCCCTGGG CCTGCCAGTCCCTGGGTGCCCTATGTAAGCGAACCCCTGGG < 41bp 0.757038918367815 0.553145045855917 0.26841593 0.34388268 prediction 0.407787745023795 Functional Loss - HGSNAT ENSG00000165102 CDS Human protein_coding chr8:43046735 chr8:43046738 nonsynonymous SNV 0.888 1 24 hm5C_associated_SNPs_95311 0 0 0 0 1 HGSNAT chr8:43046738 5'GT 43046738 Upstream 1bp
chr4 71255479 71255479 1 + C T SKCM 71255477 + 71255457 71255497 41 ATTTGTTCCACCACCTCCTCCTCCACCCTATGGTCCAGGGA ATTTGTTCCACCACCTCCTCCTTCACCCTATGGTCCAGGGA < 41bp 0.70389262853722 0.427672170645022 0.742504 0.056079358 prediction 0.40778525707444 Functional Loss - SMR3B ENSG00000171201 CDS Human protein_coding chr4:71255477 chr4:71255479 nonsynonymous SNV 0.143 0 23 hm5C_associated_SNPs_95313 0 0 0 0 1 SMR3B chr4:71255380 3'AG 71255380 Downstream 100bp
chr12 10167291 10167291 1 + G T SARC 10167289 + 10167269 10167309 41 TCTCCAGTGTACTGAAGAGGCAGGAACAAATGGCCATCAAA TCTCCAGTGTACTGAAGAGGCATGAACAAATGGCCATCAAA < 41bp 0.91577631500282 0.711884394681997 0.36351633 0.09047815 prediction 0.407783840641646 Functional Loss - CLEC12B ENSG00000256660 CDS Human protein_coding chr12:10167289 chr12:10167291 nonsynonymous SNV 0.245 1 23 hm5C_associated_SNPs_95315 0 0 0 0 1 CLEC12B chr12:10167340 5'GT 10167340 Upstream 50bp
chr19 14030675 14030675 1 + C T SKCM 14030672 + 14030652 14030692 41 TGGAGGCCACCAAGCCCACCCAGCAGAGTCTGGTGGGTGTC TGGAGGCCACCAAGCCCACCCAGTAGAGTCTGGTGGGTGTC < 41bp 0.768519794221466 0.564629054885584 0.90653276 0.899352 prediction 0.407781478671764 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14030672 chr19:14030675 stopgain 0.083 0 24 hm5C_associated_SNPs_95316 0 0 1 0 2 CC2D1A chr19:14030631 3'AG 14030631 Downstream 45bp
chr19 14030675 14030675 1 + C T SKCM 14030672 + 14030652 14030692 41 TGGAGGCCACCAAGCCCACCCAGCAGAGTCTGGTGGGTGTC TGGAGGCCACCAAGCCCACCCAGTAGAGTCTGGTGGGTGTC < 41bp 0.768519794221466 0.564629054885584 0.90653276 0.899352 prediction 0.407781478671764 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14030672 chr19:14030675 stopgain 0.083 0 24 hm5C_associated_SNPs_95316 0 0 1 0 2 CC2D1A chr19:14030764 5'GT 14030764 Upstream 90bp
chr15 66607400 66607400 1 + G A LIHC 66607397 + 66607377 66607417 41 TAGTCAGTGACATCCTAATCCACGGGATGAAGGCTCGAAAC TAGTCAGTGACATCCTAATCCACAGGATGAAGGCTCGAAAC < 41bp 0.819504851115565 0.615614193500133 0.25482404 0.06609064 prediction 0.407781315230865 Functional Loss - DIS3L ENSG00000166938 CDS Human protein_coding chr15:66607397 chr15:66607400 nonsynonymous SNV 0.644 4 24 hm5C_associated_SNPs_95317 0 0 1 0 1 DIS3L chr15:66607374 3'AG 66607374 Downstream 27bp
chr11 59523041 59523041 1 + G T rs201796338 59523038 + 59523018 59523058 41 GCTCACCTGGGACGCGCTCACCTGGGACGCGCTACCTGCCT GCTCACCTGGGACGCGCTCACCTTGGACGCGCTACCTGCCT < 41bp 0.703890390093391 0.429137182813772 0.91648304 0.78777504 prediction 0.407780780186781 Functional Loss - STX3 ENSG00000166900 UTR5 Human protein_coding chr11:59523038 chr11:59523041 . . 0 24 hm5C_associated_SNPs_95318 0 0 1 0 1 STX3 chr11:59523108 5'GT 59523108 Upstream 68bp
chr2 241531496 241531496 1 + G T UCEC 241531494 + 241531474 241531514 41 AGGCCAGGCCGCTGGGAGCACAGGACTTGTCGGCAGCTGCT AGGCCAGGCCGCTGGGAGCACATGACTTGTCGGCAGCTGCT < 41bp 0.914526422037 0.710638254999009 0.47494695 0.32199225 prediction 0.407776334075983 Functional Loss - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241531494 chr2:241531496 nonsynonymous SNV 0.734 2 23 hm5C_associated_SNPs_95321 0 0 1 0 1 CAPN10 chr2:241531567 5'GT 241531567 Upstream 72bp
chr19 4498335 4498335 1 + C T LUSC 4498332 + 4498312 4498352 41 TGGAGGAGAAGCTGCAGAAGCTGCACAGTGAGATCAAGTTT TGGAGGAGAAGCTGCAGAAGCTGTACAGTGAGATCAAGTTT < 41bp 0.756940086684606 0.553052375836701 0.026769787 0.031067938 prediction 0.40777542169581 Functional Loss - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4498332 chr19:4498335 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_95322 0 0 1 0 2 HDGFL2 chr19:4498303 3'AG 4498303 Downstream 33bp
chr19 4498335 4498335 1 + C T LUSC 4498332 + 4498312 4498352 41 TGGAGGAGAAGCTGCAGAAGCTGCACAGTGAGATCAAGTTT TGGAGGAGAAGCTGCAGAAGCTGTACAGTGAGATCAAGTTT < 41bp 0.756940086684606 0.553052375836701 0.026769787 0.031067938 prediction 0.40777542169581 Functional Loss - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4498332 chr19:4498335 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_95322 0 0 1 0 2 HDGFL2 chr19:4498373 5'GT 4498373 Upstream 39bp
chr1 113057560 113057560 1 + C T CESC 113057557 + 113057537 113057577 41 TCCCTGGTTTGGTGAGCCGGCAGCGGCAGCTGTGCCAGCGT TCCCTGGTTTGGTGAGCCGGCAGTGGCAGCTGTGCCAGCGT < 41bp 0.703886865795884 0.494838992832387 0.81650484 0.30075198 prediction 0.407773731591767 Functional Loss - WNT2B ENSG00000134245 CDS Human protein_coding chr1:113057557 chr1:113057560 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_95323 0 0 0 0 1 WNT2B chr1:113057496 3'AG 113057496 Downstream 65bp
chr2 206641009 206641009 1 + C T UCEC 206641007 + 206640987 206641027 41 GGGACCGAGCCCACAGTGGACACGGTGCCCATGCAGCCCAT GGGACCGAGCCCACAGTGGACATGGTGCCCATGCAGCCCAT < 41bp 0.703884834666609 0.454673508198532 0.1366834 0.13492987 prediction 0.407769669333218 Functional Loss - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206641007 chr2:206641009 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_95324 0 0 0 0 1 NRP2 chr2:206640970 3'AG 206640970 Downstream 40bp
chr11 380444 380444 1 + C T COAD 380442 + 380422 380462 41 GGAGCTCGCCCCGGGACCCCCACGGTGAGGCCCCGAGCGTC GGAGCTCGCCCCGGGACCCCCATGGTGAGGCCCCGAGCGTC < 41bp 0.826432852582693 0.62254826988308 0.81909764 0.75698256 prediction 0.407769165399226 Functional Loss - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:380442 chr11:380444 synonymous SNV . 0 23 hm5C_associated_SNPs_95325 0 0 0 0 1 B4GALNT4 chr11:380445 5'GT 380445 Upstream 2bp
chr19 918593 918593 1 + C T BRCA 918590 + 918570 918610 41 TTCCTCCTGTGCTGCGTCCCCTTCACGGCCCTGCTGTACCC TTCCTCCTGTGCTGCGTCCCCTTTACGGCCCTGCTGTACCC < 41bp 0.735867109104404 0.531984408959806 0.065353006 0.054359943 prediction 0.407765400289195 Functional Loss - KISS1R ENSG00000116014 CDS Human protein_coding chr19:918590 chr19:918593 synonymous SNV . 0 24 hm5C_associated_SNPs_95327 0 0 1 0 2 KISS1R chr19:918544 3'AG 918544 Downstream 50bp
chr19 918593 918593 1 + C T BRCA 918590 + 918570 918610 41 TTCCTCCTGTGCTGCGTCCCCTTCACGGCCCTGCTGTACCC TTCCTCCTGTGCTGCGTCCCCTTTACGGCCCTGCTGTACCC < 41bp 0.735867109104404 0.531984408959806 0.065353006 0.054359943 prediction 0.407765400289195 Functional Loss - KISS1R ENSG00000116014 CDS Human protein_coding chr19:918590 chr19:918593 synonymous SNV . 0 24 hm5C_associated_SNPs_95327 0 0 1 0 2 KISS1R chr19:918668 5'GT 918668 Upstream 76bp
chr22 32215155 32215155 1 + G A CESC 32215152 + 32215132 32215172 41 GATTAACCCCTTCGCTCCCTCTCGGATGCCCATGAAGCTTA GATTAACCCCTTCGCTCCCTCTCAGATGCCCATGAAGCTTA < 41bp 0.787870444344681 0.583989874367197 0.13337332 0.06031525 prediction 0.407761139954967 Functional Loss - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32215152 chr22:32215155 nonsynonymous SNV 0.800 3 24 hm5C_associated_SNPs_95328 1 0 0 0 1 DEPDC5 chr22:32215211 5'GT 32215211 Upstream 57bp
chr11 68705754 68705754 1 + G T LUAD 68705750 + 68705730 68705770 41 GGCTTTGCCAAGTGCACAGCCGGCGTCACAACCCTGGGCCA GGCTTTGCCAAGTGCACAGCCGGCTTCACAACCCTGGGCCA < 41bp 0.70388052725413 0.495572060636771 0.887596 0.34659648 prediction 0.407761054508261 Functional Loss - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68705750 chr11:68705754 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_95329 0 0 0 0 1 IGHMBP2 chr11:68705822 5'GT 68705822 Upstream 69bp
chr16 2284337 2284337 1 + C T BRCA 2284335 + 2284315 2284355 41 CGTGGCCACCGGCGCGTCCACTCAGACGAGCGGCCCTACCC CGTGGCCACCGGCGCGTCCACTTAGACGAGCGGCCCTACCC < 41bp 0.703880000100377 0.426989035675688 0.065760374 0.10142714 prediction 0.407760000200754 Functional Loss - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2284335 chr16:2284337 nonsynonymous SNV 0.973 4 23 hm5C_associated_SNPs_95331 0 0 1 0 1 E4F1 chr16:2284389 5'GT 2284389 Upstream 53bp
chr16 2284339 2284339 1 + G C LUSC 2284335 + 2284315 2284355 41 CGTGGCCACCGGCGCGTCCACTCAGACGAGCGGCCCTACCC CGTGGCCACCGGCGCGTCCACTCACACGAGCGGCCCTACCC < 41bp 0.703880000100377 0.408283847792832 0.065760374 0.05440709 prediction 0.407760000200754 Functional Loss - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2284335 chr16:2284339 nonsynonymous SNV 0.955 4 25 hm5C_associated_SNPs_95332 0 0 1 0 1 E4F1 chr16:2284389 5'GT 2284389 Upstream 51bp
chr15 28632820 28632820 1 + T C LUAD 28632819 + 28632799 28632839 41 TTCCTAGCATCCCACAGGACCTGGAGAGCAGGGAGGCCATG TTCCTAGCATCCCACAGGACCCGGAGAGCAGGGAGGCCATG < 41bp 0.829942158922206 0.626064707102432 0.53172255 0.42980015 prediction 0.407754903639548 Functional Loss - GOLGA8F;GOLGA8G ENSG00000153684 CDS Human protein_coding chr15:28632819 chr15:28632820 nonsynonymous SNV 0.052 1 22 hm5C_associated_SNPs_95334 0 0 0 0 1 GOLGA8F;GOLGA8G chr15:28632748 3'AG 28632748 Downstream 73bp
chr11 43513629 43513629 1 + C T UCEC 43513626 + 43513606 43513646 41 AATGCCAAGCTCTGGAATGACGCCGTCATAGTAGCCACCAT AATGCCAAGCTCTGGAATGACGCTGTCATAGTAGCCACCAT < 41bp 0.783250851177297 0.579376187586955 0.18114612 0.103086054 prediction 0.407749327180683 Functional Loss - TTC17 ENSG00000052841 CDS Human protein_coding chr11:43513626 chr11:43513629 synonymous SNV . 0 24 hm5C_associated_SNPs_95339 0 0 1 0 2 TTC17 chr11:43513570 3'AG 43513570 Downstream 60bp
chr11 43513629 43513629 1 + C T UCEC 43513626 + 43513606 43513646 41 AATGCCAAGCTCTGGAATGACGCCGTCATAGTAGCCACCAT AATGCCAAGCTCTGGAATGACGCTGTCATAGTAGCCACCAT < 41bp 0.783250851177297 0.579376187586955 0.18114612 0.103086054 prediction 0.407749327180683 Functional Loss - TTC17 ENSG00000052841 CDS Human protein_coding chr11:43513626 chr11:43513629 synonymous SNV . 0 24 hm5C_associated_SNPs_95339 0 0 1 0 2 TTC17 chr11:43513713 5'GT 43513713 Upstream 85bp
chr2 121726437 121726437 1 + G A COAD 121726434 + 121726414 121726454 41 AGTGGCCTACATCAACAACTCCCGAAGCAGCTCGGCGGCCA AGTGGCCTACATCAACAACTCCCAAAGCAGCTCGGCGGCCA < 41bp 0.703872573150691 0.467160467828064 0.06867549 0.044046283 prediction 0.407745146301381 Functional Loss - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121726434 chr2:121726437 nonsynonymous SNV 0.823 4 24 hm5C_associated_SNPs_95340 0 0 0 0 1 GLI2 chr2:121726491 5'GT 121726491 Upstream 55bp
chr11 93778916 93778916 1 + C T BLCA 93778914 + 93778894 93778934 41 AAGGCTGTTTACAGACGCTTCACGGATGGAACCTACTCCAT AAGGCTGTTTACAGACGCTTCATGGATGGAACCTACTCCAT < 41bp 0.703869013775245 0.428126513933994 0.19885844 0.11264762 prediction 0.40773802755049 Functional Loss - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93778914 chr11:93778916 nonsynonymous SNV 0.412 4 23 hm5C_associated_SNPs_95342 0 0 0 0 1 HEPHL1 chr11:93778839 3'AG 93778839 Downstream 78bp
chr11 93778917 93778917 1 + G A GBM 93778914 + 93778894 93778934 41 AAGGCTGTTTACAGACGCTTCACGGATGGAACCTACTCCAT AAGGCTGTTTACAGACGCTTCACAGATGGAACCTACTCCAT < 41bp 0.703869013775245 0.453209063878764 0.19885844 0.08267626 prediction 0.40773802755049 Functional Loss - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93778914 chr11:93778917 synonymous SNV . 0 24 hm5C_associated_SNPs_95343 0 0 0 0 1 HEPHL1 chr11:93778839 3'AG 93778839 Downstream 79bp
chr7 142028398 142028398 1 + G T LGG 142028396 + 142028376 142028416 41 GCATGACACTGCAGTGTGCCCAGGATATGAACCATAACTCC GCATGACACTGCAGTGTGCCCATGATATGAACCATAACTCC < 41bp 0.703867631796852 0.388775111717769 0.7599172 0.29281864 prediction 0.407735263593704 Functional Loss - TRY2P;MTRNR2L6 ENSG00000211706 CDS Human TR_V_gene chr7:142028396 chr7:142028398 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_95345 0 0 0 0 1 TRY2P;MTRNR2L6 chr7:142028316 3'AG 142028316 Downstream 83bp
chr8 70515466 70515466 1 + G A SKCM 70515463 + 70515443 70515483 41 CTCAACATTGACTTGGCCCCCACGATCCTGGATATTGCTGG CTCAACATTGACTTGGCCCCCACAATCCTGGATATTGCTGG < 41bp 0.79751513857467 0.593648167559883 0.05558759 0.018769205 prediction 0.407733942029573 Functional Loss - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70515463 chr8:70515466 synonymous SNV . 0 24 hm5C_associated_SNPs_95346 0 0 0 0 1 SULF1 chr8:70515555 5'GT 70515555 Upstream 90bp
chr2 103142759 103142759 1 + G A SKCM 103142756 + 103142736 103142776 41 CGCTACCTCTCCTACCCCTACGGGAATCCTCAGTCTGCAGG CGCTACCTCTCCTACCCCTACGGAAATCCTCAGTCTGCAGG < 41bp 0.830441322829655 0.626575057092597 0.7326981 0.29418567 prediction 0.407732531474115 Functional Loss - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103142756 chr2:103142759 synonymous SNV . 0 24 hm5C_associated_SNPs_95347 0 0 0 0 2 SLC9A4 chr2:103142718 3'AG 103142718 Downstream 42bp
chr2 103142759 103142759 1 + G A SKCM 103142756 + 103142736 103142776 41 CGCTACCTCTCCTACCCCTACGGGAATCCTCAGTCTGCAGG CGCTACCTCTCCTACCCCTACGGAAATCCTCAGTCTGCAGG < 41bp 0.830441322829655 0.626575057092597 0.7326981 0.29418567 prediction 0.407732531474115 Functional Loss - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103142756 chr2:103142759 synonymous SNV . 0 24 hm5C_associated_SNPs_95347 0 0 0 0 2 SLC9A4 chr2:103142805 5'GT 103142805 Upstream 47bp
chr12 51203362 51203362 1 + C T SARC 51203359 + 51203339 51203379 41 ACTCCCATCTATCAGACTAGCAGCGGACAGTACAGTATGTA ACTCCCATCTATCAGACTAGCAGTGGACAGTACAGTATGTA < 41bp 0.708907798084364 0.505044130212516 0.53751785 0.2455875 prediction 0.407727335743695 Functional Loss - ATF1 ENSG00000123268 CDS Human protein_coding chr12:51203359 chr12:51203362 synonymous SNV . 0 24 hm5C_associated_SNPs_95352 0 0 1 0 1 ATF1 chr12:51203372 5'GT 51203372 Upstream 11bp
chr11 125255506 125255506 1 + G T GBM 125255502 + 125255482 125255522 41 AGAAATGTGAACAGGCCACCCAGGGCTCTGAGTGCATCACC AGAAATGTGAACAGGCCACCCAGGTCTCTGAGTGCATCACC < 41bp 0.719969667366595 0.516107139422409 0.8328357 0.44630104 prediction 0.407725055888372 Functional Loss - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125255502 chr11:125255506 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_95354 0 0 0 0 1 PKNOX2 chr11:125255447 3'AG 125255447 Downstream 60bp
chr3 38307699 38307699 1 + T C UCEC 38307698 + 38307678 38307718 41 TGATATGGGCTGGGAATATCCTGAGAACAGGCTCCCATCCC TGATATGGGCTGGGAATATCCCGAGAACAGGCTCCCATCCC < 41bp 0.772843526897352 0.568984124278453 0.19701546 0.3847508 prediction 0.407718805237799 Functional Loss - SLC22A13 ENSG00000172940 CDS Human protein_coding chr3:38307698 chr3:38307699 synonymous SNV . 0 22 hm5C_associated_SNPs_95358 0 0 1 0 1 SLC22A13 chr3:38307729 5'GT 38307729 Upstream 31bp
chr13 103518104 103518104 1 + G T THYM 103518100 + 103518080 103518120 41 CTTCCAAACCTCCCTCAGAACAAGGCGAAGAGGAACTGGTA CTTCCAAACCTCCCTCAGAACAAGTCGAAGAGGAACTGGTA < 41bp 0.703895932214645 0.500037936302465 0.7837316 0.20537686 prediction 0.407715991824359 Functional Loss - BIVM-ERCC5;ERCC5 ENSG00000134899;ENSG00000270181 CDS Human other chr13:103518100 chr13:103518104 nonsynonymous SNV 0.397 0 25 hm5C_associated_SNPs_95359 0 0 1 0 1 BIVM-ERCC5;ERCC5 chr13:103518017 3'AG 103518017 Downstream 88bp
chr13 61034551 61034551 1 + G C LUSC 61034550 + 61034530 61034570 41 TTTTGCAAATTCAAAAAATTCGCAATGTTGCTGCACCAAAG TTTTGCAAATTCAAAAAATTCCCAATGTTGCTGCACCAAAG < 41bp 0.772836231597832 0.568979541776064 0.19899267 0.1775544 prediction 0.407713379643536 Functional Loss - TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61034550 chr13:61034551 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_95361 0 0 0 0 1 TDRD3 chr13:61034514 3'AG 61034514 Downstream 38bp
chr20 31413756 31413756 1 + C T UCEC 31413753 + 31413733 31413773 41 GATGGCAGTGAACGTATACTCAACGTCAGTGACCAGTGATA GATGGCAGTGAACGTATACTCAATGTCAGTGACCAGTGATA < 41bp 0.726542395573554 0.522686045749024 0.21118256 0.12588537 prediction 0.40771269964906 Functional Loss - MAPRE1 ENSG00000101367 CDS Human protein_coding chr20:31413753 chr20:31413756 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_95362 0 0 1 0 2 MAPRE1 chr20:31413731 3'AG 31413731 Downstream 26bp
chr20 31413756 31413756 1 + C T UCEC 31413753 + 31413733 31413773 41 GATGGCAGTGAACGTATACTCAACGTCAGTGACCAGTGATA GATGGCAGTGAACGTATACTCAATGTCAGTGACCAGTGATA < 41bp 0.726542395573554 0.522686045749024 0.21118256 0.12588537 prediction 0.40771269964906 Functional Loss - MAPRE1 ENSG00000101367 CDS Human protein_coding chr20:31413753 chr20:31413756 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_95362 0 0 1 0 2 MAPRE1 chr20:31413854 5'GT 31413854 Upstream 99bp
chr15 25339118 25339118 1 + G A LUSC 25339115 + 25339095 25339135 41 TCAGGTGCTGGTGGATCCCTCAGGATGGTAAATGTCCATTT TCAGGTGCTGGTGGATCCCTCAGAATGGTAAATGTCCATTT < 41bp 0.80736854715126 0.603514657689565 0.90534306 0.63717735 prediction 0.407707778923389 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25339115 chr15:25339118 . . 0 24 hm5C_associated_SNPs_95366 0 0 1 0 1 SNHG14 chr15:25339121 5'GT 25339121 Upstream 4bp
chr4 41266155 41266155 1 + A T LIHC 41266151 + 41266131 41266171 41 CCTTTTCCGGTGAACCATGGCGCCAGTTCAGAGGACACCCT CCTTTTCCGGTGAACCATGGCGCCTGTTCAGAGGACACCCT < 41bp 0.703853224818199 0.359361925442869 0.2050257 0.07567632 prediction 0.407706449636397 Functional Loss - UCHL1 ENSG00000154277 CDS Human protein_coding chr4:41266151 chr4:41266155 nonsynonymous SNV 0.932 2 25 hm5C_associated_SNPs_95367 0 0 1 0 2 UCHL1 chr4:41266120 3'AG 41266120 Downstream 36bp
chr4 41266155 41266155 1 + A T LIHC 41266151 + 41266131 41266171 41 CCTTTTCCGGTGAACCATGGCGCCAGTTCAGAGGACACCCT CCTTTTCCGGTGAACCATGGCGCCTGTTCAGAGGACACCCT < 41bp 0.703853224818199 0.359361925442869 0.2050257 0.07567632 prediction 0.407706449636397 Functional Loss - UCHL1 ENSG00000154277 CDS Human protein_coding chr4:41266151 chr4:41266155 nonsynonymous SNV 0.932 2 25 hm5C_associated_SNPs_95367 0 0 1 0 2 UCHL1 chr4:41266178 5'GT 41266178 Upstream 24bp
chr17 45351805 45351805 1 + C T COAD 45351803 + 45351783 45351823 41 AGGGCCCAACATCTGTACCACGCGAGGTGTGAGCTCCTGCC AGGGCCCAACATCTGTACCACGTGAGGTGTGAGCTCCTGCC < 41bp 0.868004757822203 0.664152139732848 0.4771918 0.5297735 prediction 0.407705236178712 Functional Loss - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45351803 chr17:45351805 stopgain 0.983 1 23 hm5C_associated_SNPs_95368 0 0 0 0 2 ITGB3 chr17:45351785 3'AG 45351785 Downstream 21bp
chr17 45351805 45351805 1 + C T COAD 45351803 + 45351783 45351823 41 AGGGCCCAACATCTGTACCACGCGAGGTGTGAGCTCCTGCC AGGGCCCAACATCTGTACCACGTGAGGTGTGAGCTCCTGCC < 41bp 0.868004757822203 0.664152139732848 0.4771918 0.5297735 prediction 0.407705236178712 Functional Loss - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45351803 chr17:45351805 stopgain 0.983 1 23 hm5C_associated_SNPs_95368 0 0 0 0 2 ITGB3 chr17:45351870 5'GT 45351870 Upstream 66bp
chr22 35726376 35726376 1 + G A rs35352978 35726373 + 35726353 35726393 41 CGTGCCGAGCCATGCAGCAGCGGGTCCTGGAGCTCATCCCT CGTGCCGAGCCATGCAGCAGCGGATCCTGGAGCTCATCCCT < 41bp 0.703851539981297 0.448352289161682 0.18572581 0.25670946 prediction 0.407703079962594 Functional Loss - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35726373 chr22:35726376 nonsynonymous SNV 0.990 0 24 hm5C_associated_SNPs_95371 0 0 1 0 2 TOM1 chr22:35726340 3'AG 35726340 Downstream 37bp
chr22 35726376 35726376 1 + G A rs35352978 35726373 + 35726353 35726393 41 CGTGCCGAGCCATGCAGCAGCGGGTCCTGGAGCTCATCCCT CGTGCCGAGCCATGCAGCAGCGGATCCTGGAGCTCATCCCT < 41bp 0.703851539981297 0.448352289161682 0.18572581 0.25670946 prediction 0.407703079962594 Functional Loss - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35726373 chr22:35726376 nonsynonymous SNV 0.990 0 24 hm5C_associated_SNPs_95371 0 0 1 0 2 TOM1 chr22:35726473 5'GT 35726473 Upstream 98bp
chr17 47293955 47293955 1 + C T UCEC 47293952 + 47293932 47293972 41 TTCACTACCCAGGCACTGGCCAGCGTGGCCTACCAGGTGGG TTCACTACCCAGGCACTGGCCAGTGTGGCCTACCAGGTGGG < 41bp 0.703849444876438 0.49334073423488 0.49370554 0.2471528 prediction 0.407698889752876 Functional Loss - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47293952 chr17:47293955 synonymous SNV . 0 24 hm5C_associated_SNPs_95373 0 0 0 0 2 ABI3 chr17:47293893 3'AG 47293893 Downstream 63bp
chr17 47293955 47293955 1 + C T UCEC 47293952 + 47293932 47293972 41 TTCACTACCCAGGCACTGGCCAGCGTGGCCTACCAGGTGGG TTCACTACCCAGGCACTGGCCAGTGTGGCCTACCAGGTGGG < 41bp 0.703849444876438 0.49334073423488 0.49370554 0.2471528 prediction 0.407698889752876 Functional Loss - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47293952 chr17:47293955 synonymous SNV . 0 24 hm5C_associated_SNPs_95373 0 0 0 0 2 ABI3 chr17:47294042 5'GT 47294042 Upstream 88bp
chr12 111078896 111078896 1 + G T HNSC 111078892 + 111078872 111078912 41 AAGCTGATCTCTCATTCGTTCTGGGGACAGTTAGCAGCGTA AAGCTGATCTCTCATTCGTTCTGGTGACAGTTAGCAGCGTA < 41bp 0.728036233214482 0.524188290834514 0.42807826 0.21959272 prediction 0.407695884759935 Functional Loss - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111078892 chr12:111078896 nonsynonymous SNV 0.993 5 25 hm5C_associated_SNPs_95376 0 0 0 0 2 TCTN1 chr12:111078829 3'AG 111078829 Downstream 68bp
chr12 111078896 111078896 1 + G T HNSC 111078892 + 111078872 111078912 41 AAGCTGATCTCTCATTCGTTCTGGGGACAGTTAGCAGCGTA AAGCTGATCTCTCATTCGTTCTGGTGACAGTTAGCAGCGTA < 41bp 0.728036233214482 0.524188290834514 0.42807826 0.21959272 prediction 0.407695884759935 Functional Loss - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111078892 chr12:111078896 nonsynonymous SNV 0.993 5 25 hm5C_associated_SNPs_95376 0 0 0 0 2 TCTN1 chr12:111078954 5'GT 111078954 Upstream 59bp
chr17 32614213 32614213 1 + C T SKCM 32614210 + 32614190 32614230 41 GAATCACCAGTGGCAAATGTCCCCAGAAAGCTGTGATGTAA GAATCACCAGTGGCAAATGTCCCTAGAAAGCTGTGATGTAA < 41bp 0.703846366129588 0.48303548660857 0.06627965 0.07610497 prediction 0.407692732259176 Functional Loss - CCL11 ENSG00000172156 CDS Human protein_coding chr17:32614210 chr17:32614213 stopgain 0.016 0 24 hm5C_associated_SNPs_95377 0 0 0 0 2 CCL11 chr17:32614115 3'AG 32614115 Downstream 99bp
chr17 32614213 32614213 1 + C T SKCM 32614210 + 32614190 32614230 41 GAATCACCAGTGGCAAATGTCCCCAGAAAGCTGTGATGTAA GAATCACCAGTGGCAAATGTCCCTAGAAAGCTGTGATGTAA < 41bp 0.703846366129588 0.48303548660857 0.06627965 0.07610497 prediction 0.407692732259176 Functional Loss - CCL11 ENSG00000172156 CDS Human protein_coding chr17:32614210 chr17:32614213 stopgain 0.016 0 24 hm5C_associated_SNPs_95377 0 0 0 0 2 CCL11 chr17:32614226 5'GT 32614226 Upstream 14bp
chr16 2757372 2757372 1 + G T LUAD 2757369 + 2757349 2757389 41 GAAGAAATGATTTACGTTTTCCCGAGATGTAATGAACTGCC GAAGAAATGATTTACGTTTTCCCTAGATGTAATGAACTGCC < 41bp 0.703846228058331 0.32380133838493 0.08538291 0.05977246 prediction 0.407692456116663 Functional Loss - KCTD5 ENSG00000167977 CDS Human protein_coding chr16:2757369 chr16:2757372 synonymous SNV . 0 24 hm5C_associated_SNPs_95378 0 0 1 0 1 KCTD5 chr16:2757299 3'AG 2757299 Downstream 74bp
chrX 73745699 73745699 1 + A T STAD 73745695 + 73745675 73745715 41 GTGTCAGGCCACATCAGTGACTCCATCCCTGGACTTAAGAA GTGTCAGGCCACATCAGTGACTCCTTCCCTGGACTTAAGAA < 41bp 0.703845799666895 0.330940082595889 0.95707834 0.10508564 prediction 0.407691599333789 Functional Loss - SLC16A2 ENSG00000147100 CDS Human protein_coding chrX:73745695 chrX:73745699 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_95379 0 0 1 0 1 SLC16A2 chrX:73745728 5'GT 73745728 Upstream 30bp
chr19 52954474 52954474 1 + C T rs373983368 52954471 + 52954451 52954491 41 CTGGCCTGGGACGCGCGCGTCTTCAGGGTGGAAGCCTGGCG CTGGCCTGGGACGCGCGCGTCTTTAGGGTGGAAGCCTGGCG < 41bp 0.703842933144136 0.496144802833924 0.38465625 0.39438835 prediction 0.407685866288271 Functional Loss - ZNF534 ENSG00000198633 CDS Human protein_coding chr19:52954471 chr19:52954474 synonymous SNV . 0 24 hm5C_associated_SNPs_95380 0 0 0 0 1 ZNF534 chr19:52954440 3'AG 52954440 Downstream 35bp
chr12 121437306 121437306 1 + G T UCEC 121437302 + 121437282 121437322 41 CCAGGTCTTCACCTCAGACACTGAGGCCTCCAGTGAGTCCG CCAGGTCTTCACCTCAGACACTGATGCCTCCAGTGAGTCCG < 41bp 0.703842514179883 0.490594070882705 0.372339 0.12531027 prediction 0.407685028359767 Functional Loss - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121437302 chr12:121437306 nonsynonymous SNV 0.937 1 25 hm5C_associated_SNPs_95381 0 0 0 0 2 HNF1A chr12:121437265 3'AG 121437265 Downstream 42bp
chr12 121437306 121437306 1 + G T UCEC 121437302 + 121437282 121437322 41 CCAGGTCTTCACCTCAGACACTGAGGCCTCCAGTGAGTCCG CCAGGTCTTCACCTCAGACACTGATGCCTCCAGTGAGTCCG < 41bp 0.703842514179883 0.490594070882705 0.372339 0.12531027 prediction 0.407685028359767 Functional Loss - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121437302 chr12:121437306 nonsynonymous SNV 0.937 1 25 hm5C_associated_SNPs_95381 0 0 0 0 2 HNF1A chr12:121437286 3'AG 121437286 Downstream 21bp
chr9 101765755 101765755 1 + G C HNSC 101765754 + 101765734 101765774 41 GAATTTAGCAGCAACAGCAGCGGGGCTGGCCGAGGTGCCCA GAATTTAGCAGCAACAGCAGCCGGGCTGGCCGAGGTGCCCA < 41bp 0.703840774736411 0.381724835063704 0.90163445 0.59568334 prediction 0.407681549472821 Functional Loss - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765754 chr9:101765755 synonymous SNV . 0 22 hm5C_associated_SNPs_95382 0 0 0 0 1 COL15A1 chr9:101765735 3'AG 101765735 Downstream 21bp
chr16 20476935 20476935 1 + C T ACC 20476932 + 20476912 20476952 41 GAGAACTGAGTGAAAACAGCCAGCAGGCAGCCAACGTCCTC GAGAACTGAGTGAAAACAGCCAGTAGGCAGCCAACGTCCTC < 41bp 0.753567471334125 0.549727376953351 0.72597265 0.70039606 prediction 0.407680188761548 Functional Loss - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20476932 chr16:20476935 stopgain 0.558 0 24 hm5C_associated_SNPs_95383 0 0 0 2 1 ACSM2A chr16:20476839 3'AG 20476839 Downstream 97bp
chr19 830878 830878 1 + G A SKCM 830875 + 830855 830895 41 GTCAACGTGACTGTGACCCCCGAGGACCAGTGTCGCCCCAA GTCAACGTGACTGTGACCCCCGAAGACCAGTGTCGCCCCAA < 41bp 0.829914917776602 0.626079145950412 0.8129542 0.48233917 prediction 0.40767154365238 Functional Loss - AZU1 ENSG00000172232 CDS Human protein_coding chr19:830875 chr19:830878 synonymous SNV . 0 24 hm5C_associated_SNPs_95390 0 0 1 0 1 AZU1 chr19:830941 5'GT 830941 Upstream 64bp
chr2 202712183 202712183 1 + G A LUAD 202712180 + 202712160 202712200 41 TTTCCAACATCCTTGAACAGCTGGAGAAAATCTGGGAGGTA TTTCCAACATCCTTGAACAGCTGAAGAAAATCTGGGAGGTA < 41bp 0.703835070834596 0.475036095109197 0.41140282 0.6297557 prediction 0.407670141669191 Functional Loss - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202712180 chr2:202712183 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_95392 0 0 0 0 2 CDK15 chr2:202712104 3'AG 202712104 Downstream 80bp
chr2 202712183 202712183 1 + G A LUAD 202712180 + 202712160 202712200 41 TTTCCAACATCCTTGAACAGCTGGAGAAAATCTGGGAGGTA TTTCCAACATCCTTGAACAGCTGAAGAAAATCTGGGAGGTA < 41bp 0.703835070834596 0.475036095109197 0.41140282 0.6297557 prediction 0.407670141669191 Functional Loss - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202712180 chr2:202712183 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_95392 0 0 0 0 2 CDK15 chr2:202712197 5'GT 202712197 Upstream 15bp
chr22 32233058 32233058 1 + C T OV 32233055 + 32233035 32233075 41 CCGGCGTGCCTCCCCCTTACCACCGACTACTTCCCTGACCG CCGGCGTGCCTCCCCCTTACCACTGACTACTTCCCTGACCG < 41bp 0.737582808591856 0.533756536390189 0.37944674 0.2623381 prediction 0.407652544403335 Functional Loss - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32233055 chr22:32233058 synonymous SNV . 0 24 hm5C_associated_SNPs_95398 0 0 0 0 2 DEPDC5 chr22:32232985 3'AG 32232985 Downstream 74bp
chr22 32233058 32233058 1 + C T OV 32233055 + 32233035 32233075 41 CCGGCGTGCCTCCCCCTTACCACCGACTACTTCCCTGACCG CCGGCGTGCCTCCCCCTTACCACTGACTACTTCCCTGACCG < 41bp 0.737582808591856 0.533756536390189 0.37944674 0.2623381 prediction 0.407652544403335 Functional Loss - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32233055 chr22:32233058 synonymous SNV . 0 24 hm5C_associated_SNPs_95398 0 0 0 0 2 DEPDC5 chr22:32233141 5'GT 32233141 Upstream 84bp
chr19 47879354 47879354 1 + G T SARC 47879352 + 47879332 47879372 41 GCAGCCGAAAGGACTCAGACCAGGTGGGGCCTGTTCTGCCC GCAGCCGAAAGGACTCAGACCATGTGGGGCCTGTTCTGCCC < 41bp 0.703825979388394 0.343891192524537 0.8892141 0.38708806 prediction 0.407651958776789 Functional Loss - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47879352 chr19:47879354 nonsynonymous SNV 0.901 4 23 hm5C_associated_SNPs_95399 0 0 1 0 1 DHX34 chr19:47879354 5'GT 47879354 Upstream 1bp
chrX 15534347 15534347 1 + G A SKCM 15534344 + 15534324 15534364 41 GCAGCCCCAGGATGTACCCTCTGGGAAGCATGTAATGTGTG GCAGCCCCAGGATGTACCCTCTGAGAAGCATGTAATGTGTG < 41bp 0.822230269438867 0.618406578617246 0.27564722 0.20603979 prediction 0.407647381643241 Functional Loss - BMX ENSG00000102010 CDS Human protein_coding chrX:15534344 chrX:15534347 stopgain 1.000 1 24 hm5C_associated_SNPs_95403 0 0 0 0 1 BMX chrX:15534354 5'GT 15534354 Upstream 8bp
chr11 57427295 57427295 1 + G A UCEC 57427292 + 57427272 57427312 41 AAAGGAAGAAGAGCGAGGTCCCCGAGTGATGGTAGTGGGCC AAAGGAAGAAGAGCGAGGTCCCCAAGTGATGGTAGTGGGCC < 41bp 0.816867709440389 0.613047269591057 0.508136 0.83305323 prediction 0.407640879698665 Functional Loss - CLP1 ENSG00000172409 CDS Human protein_coding chr11:57427292 chr11:57427295 nonsynonymous SNV 0.974 2 24 hm5C_associated_SNPs_95406 0 0 0 0 1 CLP1 chr11:57427362 5'GT 57427362 Upstream 68bp
chr1 7880644 7880644 1 + G A GBM 7880641 + 7880621 7880661 41 GGCGATGCTGAGCTTGGGGTCGGGCATAAGCCAATGCGGTT GGCGATGCTGAGCTTGGGGTCGGACATAAGCCAATGCGGTT < 41bp 0.703818729875703 0.450078686962629 0.8829674 0.5117396 prediction 0.407637459751406 Functional Loss - PER3 ENSG00000049246 CDS Human protein_coding chr1:7880641 chr1:7880644 nonsynonymous SNV 0.250 0 24 hm5C_associated_SNPs_95407 0 0 0 0 1 PER3 chr1:7880700 5'GT 7880700 Upstream 57bp
chr22 31010430 31010430 1 + C T UCEC 31010427 + 31010407 31010447 41 CACCAGAAGCGGGTCCATGACAGCGTGGTGGACAAACTTCT CACCAGAAGCGGGTCCATGACAGTGTGGTGGACAAACTTCT < 41bp 0.756714500446934 0.552896111383568 0.26796177 0.17789865 prediction 0.407636778126732 Functional Loss - TCN2 ENSG00000185339 CDS Human protein_coding chr22:31010427 chr22:31010430 synonymous SNV . 0 24 hm5C_associated_SNPs_95408 0 0 0 0 2 TCN2 chr22:31010336 3'AG 31010336 Downstream 95bp
chr22 31010430 31010430 1 + C T UCEC 31010427 + 31010407 31010447 41 CACCAGAAGCGGGTCCATGACAGCGTGGTGGACAAACTTCT CACCAGAAGCGGGTCCATGACAGTGTGGTGGACAAACTTCT < 41bp 0.756714500446934 0.552896111383568 0.26796177 0.17789865 prediction 0.407636778126732 Functional Loss - TCN2 ENSG00000185339 CDS Human protein_coding chr22:31010427 chr22:31010430 synonymous SNV . 0 24 hm5C_associated_SNPs_95408 0 0 0 0 2 TCN2 chr22:31010488 5'GT 31010488 Upstream 59bp
chr1 203013528 203013528 1 + G T SARC 203013526 + 203013506 203013546 41 GGTGCGAGAGCGGCTCCGGGCAGCGCTGGAGCGAGTCACCA GGTGCGAGAGCGGCTCCGGGCATCGCTGGAGCGAGTCACCA < 41bp 0.703815298352487 0.334739716156214 0.8959848 0.4993749 prediction 0.407630596704973 Functional Loss - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203013526 chr1:203013528 nonsynonymous SNV 0.703 0 23 hm5C_associated_SNPs_95409 0 0 1 0 2 PPFIA4 chr1:203013507 3'AG 203013507 Downstream 22bp
chr1 203013528 203013528 1 + G T SARC 203013526 + 203013506 203013546 41 GGTGCGAGAGCGGCTCCGGGCAGCGCTGGAGCGAGTCACCA GGTGCGAGAGCGGCTCCGGGCATCGCTGGAGCGAGTCACCA < 41bp 0.703815298352487 0.334739716156214 0.8959848 0.4993749 prediction 0.407630596704973 Functional Loss - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203013526 chr1:203013528 nonsynonymous SNV 0.703 0 23 hm5C_associated_SNPs_95409 0 0 1 0 2 PPFIA4 chr1:203013581 5'GT 203013581 Upstream 54bp
chr1 203013529 203013529 1 + C T UCEC 203013526 + 203013506 203013546 41 GGTGCGAGAGCGGCTCCGGGCAGCGCTGGAGCGAGTCACCA GGTGCGAGAGCGGCTCCGGGCAGTGCTGGAGCGAGTCACCA < 41bp 0.703815298352487 0.495876878546908 0.8959848 0.8643495 prediction 0.407630596704973 Functional Loss - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203013526 chr1:203013529 nonsynonymous SNV 0.545 2 24 hm5C_associated_SNPs_95410 0 0 1 0 2 PPFIA4 chr1:203013507 3'AG 203013507 Downstream 23bp
chr1 203013529 203013529 1 + C T UCEC 203013526 + 203013506 203013546 41 GGTGCGAGAGCGGCTCCGGGCAGCGCTGGAGCGAGTCACCA GGTGCGAGAGCGGCTCCGGGCAGTGCTGGAGCGAGTCACCA < 41bp 0.703815298352487 0.495876878546908 0.8959848 0.8643495 prediction 0.407630596704973 Functional Loss - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203013526 chr1:203013529 nonsynonymous SNV 0.545 2 24 hm5C_associated_SNPs_95410 0 0 1 0 2 PPFIA4 chr1:203013581 5'GT 203013581 Upstream 53bp
chr19 39219727 39219727 1 + G A COAD 39219724 + 39219704 39219744 41 AGCCTTCATCGACTTCATGTCGCGGGAGACCACCGACACGG AGCCTTCATCGACTTCATGTCGCAGGAGACCACCGACACGG < 41bp 0.82133649244884 0.617522270034143 0.9100625 0.49542946 prediction 0.407628444829394 Functional Loss - ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39219724 chr19:39219727 nonsynonymous SNV 0.988 0 24 hm5C_associated_SNPs_95411 0 0 1 0 1 ACTN4 chr19:39219794 5'GT 39219794 Upstream 68bp
chr7 5270545 5270545 1 + C T UCEC 5270542 + 5270522 5270562 41 GCCCTGCGCCTGGATGAGGACAGCGAGCACCCGCCCATGAT GCCCTGCGCCTGGATGAGGACAGTGAGCACCCGCCCATGAT < 41bp 0.712654320427392 0.50884490053747 0.4547303 0.6690014 prediction 0.407618839779844 Functional Loss - WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5270542 chr7:5270545 synonymous SNV . 0 24 hm5C_associated_SNPs_95416 0 0 1 0 1 WIPI2 chr7:5270466 3'AG 5270466 Downstream 80bp
chr1 92446491 92446491 1 + A T BLCA 92446487 + 92446467 92446507 41 ACAGTTCATTGGTCTAAAATCTGAAGATGAAGATAATGCTA ACAGTTCATTGGTCTAAAATCTGATGATGAAGATAATGCTA < 41bp 0.70380811760333 0.378404396419358 0.04875794 0.1327194 prediction 0.40761623520666 Functional Loss - BRDT ENSG00000137948 CDS Human protein_coding chr1:92446487 chr1:92446491 nonsynonymous SNV 0.870 1 25 hm5C_associated_SNPs_95417 0 0 0 0 1 BRDT chr1:92446446 3'AG 92446446 Downstream 46bp
chr1 92446488 92446488 1 + T C LGG 92446487 + 92446467 92446507 41 ACAGTTCATTGGTCTAAAATCTGAAGATGAAGATAATGCTA ACAGTTCATTGGTCTAAAATCCGAAGATGAAGATAATGCTA < 41bp 0.70380811760333 0.464671721450124 0.04875794 0.25540823 prediction 0.40761623520666 Functional Loss - BRDT ENSG00000137948 CDS Human protein_coding chr1:92446487 chr1:92446488 synonymous SNV . 0 22 hm5C_associated_SNPs_95418 0 0 0 0 1 BRDT chr1:92446446 3'AG 92446446 Downstream 43bp
chr12 54338849 54338849 1 + A C OV 54338845 + 54338825 54338865 41 GGGCGCAAGAAACGCGTGCCCTACACTAAGGTGCAGCTGAA GGGCGCAAGAAACGCGTGCCCTACCCTAAGGTGCAGCTGAA < 41bp 0.703803091461608 0.292477332520025 0.79570985 0.22674349 prediction 0.407606182923217 Functional Loss - HOXC13 ENSG00000123364 CDS Human protein_coding chr12:54338845 chr12:54338849 nonsynonymous SNV 0.989 5 25 hm5C_associated_SNPs_95422 0 0 0 0 1 HOXC13 chr12:54338784 3'AG 54338784 Downstream 66bp
chr1 11897194 11897194 1 + C T UCEC 11897191 + 11897171 11897211 41 CAGCCGAGAAGGAGGACCTCCTGCAGCAGATGCTGGAAAGG CAGCCGAGAAGGAGGACCTCCTGTAGCAGATGCTGGAAAGG < 41bp 0.703800161809992 0.47260246174627 0.66639364 0.38652658 prediction 0.407600323619984 Functional Loss - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11897191 chr1:11897194 stopgain 0.998 1 24 hm5C_associated_SNPs_95423 0 0 1 0 1 CLCN6 chr1:11897213 5'GT 11897213 Upstream 20bp
chr19 34180177 34180177 1 + C T UCEC 34180174 + 34180154 34180194 41 TGAGCCAGCCCCGGATGACCCTGCGACCTGGAACAATGCGG TGAGCCAGCCCCGGATGACCCTGTGACCTGGAACAATGCGG < 41bp 0.740161648480603 0.536362630314825 0.27860618 0.23551053 prediction 0.407598036331557 Functional Loss - CHST8 ENSG00000124302 CDS Human protein_coding chr19:34180174 chr19:34180177 stopgain 0.340 0 24 hm5C_associated_SNPs_95424 0 0 0 0 1 CHST8 chr19:34180082 3'AG 34180082 Downstream 96bp
chr7 74004251 74004251 1 + A T LUAD 74004247 + 74004227 74004267 41 CAGGTGAAGGAACTCTTCAACGAGAAATACGGTCAGTGCCT CAGGTGAAGGAACTCTTCAACGAGTAATACGGTCAGTGCCT < 41bp 0.703797549859806 0.375134161674362 0.91634315 0.9009879 prediction 0.407595099719613 Functional Loss - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:74004247 chr7:74004251 stopgain 1.000 1 25 hm5C_associated_SNPs_95427 0 0 1 0 2 GTF2IRD1 chr7:74004180 3'AG 74004180 Downstream 72bp
chr7 74004251 74004251 1 + A T LUAD 74004247 + 74004227 74004267 41 CAGGTGAAGGAACTCTTCAACGAGAAATACGGTCAGTGCCT CAGGTGAAGGAACTCTTCAACGAGTAATACGGTCAGTGCCT < 41bp 0.703797549859806 0.375134161674362 0.91634315 0.9009879 prediction 0.407595099719613 Functional Loss - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:74004247 chr7:74004251 stopgain 1.000 1 25 hm5C_associated_SNPs_95427 0 0 1 0 2 GTF2IRD1 chr7:74004257 5'GT 74004257 Upstream 7bp
chrX 117528104 117528104 1 + G A SKCM 117528101 + 117528081 117528121 41 TTAAGGATTCTCAGCCTTCTCTTGATTTGGCAAGTGCTACC TTAAGGATTCTCAGCCTTCTCTTAATTTGGCAAGTGCTACC < 41bp 0.806432482750891 0.602634977990497 0.049406976 0.06806058 prediction 0.407595009520787 Functional Loss - WDR44 ENSG00000131725 CDS Human protein_coding chrX:117528101 chrX:117528104 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_95428 0 0 1 0 2 WDR44 chrX:117528018 3'AG 117528018 Downstream 87bp
chrX 117528104 117528104 1 + G A SKCM 117528101 + 117528081 117528121 41 TTAAGGATTCTCAGCCTTCTCTTGATTTGGCAAGTGCTACC TTAAGGATTCTCAGCCTTCTCTTAATTTGGCAAGTGCTACC < 41bp 0.806432482750891 0.602634977990497 0.049406976 0.06806058 prediction 0.407595009520787 Functional Loss - WDR44 ENSG00000131725 CDS Human protein_coding chrX:117528101 chrX:117528104 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_95428 0 0 1 0 2 WDR44 chrX:117528148 5'GT 117528148 Upstream 45bp
chr2 219736234 219736234 1 + C T STAD 219736232 + 219736212 219736252 41 CGGGAGACGGCCTTCGTGTTCGCCATCACTGCGGCCGGCGC CGGGAGACGGCCTTCGTGTTCGTCATCACTGCGGCCGGCGC < 41bp 0.851859544407954 0.64806242536466 0.5446583 0.49060953 prediction 0.407594238086588 Functional Loss - WNT6 ENSG00000115596 CDS Human protein_coding chr2:219736232 chr2:219736234 nonsynonymous SNV 0.091 4 23 hm5C_associated_SNPs_95430 0 0 0 0 1 WNT6 chr2:219736207 3'AG 219736207 Downstream 28bp
chr19 49131530 49131530 1 + G A UCEC 49131527 + 49131507 49131547 41 TGGCCGGAGCAGTGAACCAGCACGGGGGGTAGGTTGAGGAT TGGCCGGAGCAGTGAACCAGCACAGGGGGTAGGTTGAGGAT < 41bp 0.82531431751673 0.621521613220271 0.42235774 0.33673978 prediction 0.407585408592918 Functional Loss - SPHK2 ENSG00000063176 CDS Human protein_coding chr19:49131527 chr19:49131530 nonsynonymous SNV 0.806 4 24 hm5C_associated_SNPs_95435 0 0 0 0 1 SPHK2 chr19:49131534 5'GT 49131534 Upstream 5bp
chr16 87245731 87245731 1 + G A rs1108048 87245728 + 87245708 87245748 41 GGAACTGCCCAGTTGGGCAGCGCGATGGGAAGGAGCCCACC GGAACTGCCCAGTTGGGCAGCGCAATGGGAAGGAGCCCACC < 41bp 0.802834689521705 0.599049845569997 0.8632488 0.87015086 prediction 0.407569687903417 Functional Loss - LOC101928708 ENSG00000261095 ncRNA_exonic Human lincRNA chr16:87245728 chr16:87245731 . . 0 24 hm5C_associated_SNPs_95439 0 0 0 0 1 LOC101928708 chr16:87245818 5'GT 87245818 Upstream 88bp
chr9 139562801 139562801 1 + G A rs200494855 139562798 + 139562778 139562818 41 TGGCAGTGGGCGGCACAGAGCACGCCTACCGGCCCGGGTGA TGGCAGTGGGCGGCACAGAGCACACCTACCGGCCCGGGTGA < 41bp 0.703782311338628 0.43978663749813 0.42618793 0.05374199 prediction 0.407564622677257 Functional Loss - EGFL7 ENSG00000172889 CDS Human protein_coding chr9:139562798 chr9:139562801 nonsynonymous SNV 0.008 1 24 hm5C_associated_SNPs_95440 0 0 1 0 1 EGFL7 chr9:139562814 5'GT 139562814 Upstream 14bp
chr14 94582185 94582185 1 + G A UCEC 94582182 + 94582162 94582202 41 TTCACTGCGGCGGGAATCGCCTCGTCCTCCATAGCAGCCAA TTCACTGCGGCGGGAATCGCCTCATCCTCCATAGCAGCCAA < 41bp 0.822999160909661 0.619220173450404 0.1852856 0.025701463 prediction 0.407557974918513 Functional Loss - IFI27 ENSG00000165949 CDS Human protein_coding chr14:94582182 chr14:94582185 synonymous SNV . 0 24 hm5C_associated_SNPs_95444 0 0 0 0 1 IFI27 chr14:94582127 3'AG 94582127 Downstream 59bp
chr2 103095719 103095719 1 + G A SKCM 103095716 + 103095696 103095736 41 CGCGTGAACGAGCAGCTCTACATGATGATCTTTGGGGAGGC CGCGTGAACGAGCAGCTCTACATAATGATCTTTGGGGAGGC < 41bp 0.703773443022724 0.458767419667291 0.087537706 0.14602205 prediction 0.407546886045448 Functional Loss - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103095716 chr2:103095719 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_95447 0 0 0 0 1 SLC9A4 chr2:103095761 5'GT 103095761 Upstream 43bp
chr11 65388396 65388396 1 + C T COAD 65388393 + 65388373 65388413 41 TGCAGCCGAGGCCTGTGGTTCTGCAGGGCATGCAGGTGCGC TGCAGCCGAGGCCTGTGGTTCTGTAGGGCATGCAGGTGCGC < 41bp 0.748244503563739 0.544472197258917 0.29303288 0.24264047 prediction 0.407544612609645 Functional Loss - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65388393 chr11:65388396 stopgain 0.994 0 24 hm5C_associated_SNPs_95448 0 0 1 0 2 PCNX3 chr11:65388302 3'AG 65388302 Downstream 95bp
chr11 65388396 65388396 1 + C T COAD 65388393 + 65388373 65388413 41 TGCAGCCGAGGCCTGTGGTTCTGCAGGGCATGCAGGTGCGC TGCAGCCGAGGCCTGTGGTTCTGTAGGGCATGCAGGTGCGC < 41bp 0.748244503563739 0.544472197258917 0.29303288 0.24264047 prediction 0.407544612609645 Functional Loss - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65388393 chr11:65388396 stopgain 0.994 0 24 hm5C_associated_SNPs_95448 0 0 1 0 2 PCNX3 chr11:65388437 5'GT 65388437 Upstream 42bp
chr7 6072500 6072500 1 + G T SARC 6072497 + 6072477 6072517 41 AGTCTATCATCCCCATCCATCTGGCTGCCAAGTACCACAAG AGTCTATCATCCCCATCCATCTGTCTGCCAAGTACCACAAG < 41bp 0.703771579617209 0.299546860512774 0.5392804 0.17226261 prediction 0.407543159234417 Functional Loss - ANKRD61 ENSG00000157999 CDS Human protein_coding chr7:6072497 chr7:6072500 nonsynonymous SNV 0.748 2 24 hm5C_associated_SNPs_95449 0 0 0 0 2 ANKRD61 chr7:6072470 3'AG 6072470 Downstream 31bp
chr7 6072500 6072500 1 + G T SARC 6072497 + 6072477 6072517 41 AGTCTATCATCCCCATCCATCTGGCTGCCAAGTACCACAAG AGTCTATCATCCCCATCCATCTGTCTGCCAAGTACCACAAG < 41bp 0.703771579617209 0.299546860512774 0.5392804 0.17226261 prediction 0.407543159234417 Functional Loss - ANKRD61 ENSG00000157999 CDS Human protein_coding chr7:6072497 chr7:6072500 nonsynonymous SNV 0.748 2 24 hm5C_associated_SNPs_95449 0 0 0 0 2 ANKRD61 chr7:6072567 5'GT 6072567 Upstream 68bp
chr9 126135490 126135490 1 + G A rs144714250 126135487 + 126135467 126135507 41 ACGCGTCGTCAGGGCGCTTGCTCGGCGGCCTGTCGCTGGCC ACGCGTCGTCAGGGCGCTTGCTCAGCGGCCTGTCGCTGGCC < 41bp 0.837778854959304 0.634008604869467 0.5765699 0.5412162 prediction 0.407540500179673 Functional Loss - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126135487 chr9:126135490 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_95451 0 0 0 0 1 CRB2 chr9:126135413 3'AG 126135413 Downstream 78bp
chr3 50609146 50609146 1 + G T UCEC 50609144 + 50609124 50609164 41 ATTCTCTGTGGGGACAGTTTCAGAGCCTGAGGCCGGCACTT ATTCTCTGTGGGGACAGTTTCATAGCCTGAGGCCGGCACTT < 41bp 0.703768457918346 0.334860141636522 0.93049574 0.5419486 prediction 0.407536915836692 Functional Loss - HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50609144 chr3:50609146 stopgain 1.000 0 23 hm5C_associated_SNPs_95453 0 0 1 0 2 HEMK1 chr3:50609141 3'AG 50609141 Downstream 6bp
chr3 50609146 50609146 1 + G T UCEC 50609144 + 50609124 50609164 41 ATTCTCTGTGGGGACAGTTTCAGAGCCTGAGGCCGGCACTT ATTCTCTGTGGGGACAGTTTCATAGCCTGAGGCCGGCACTT < 41bp 0.703768457918346 0.334860141636522 0.93049574 0.5419486 prediction 0.407536915836692 Functional Loss - HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50609144 chr3:50609146 stopgain 1.000 0 23 hm5C_associated_SNPs_95453 0 0 1 0 2 HEMK1 chr3:50609232 5'GT 50609232 Upstream 87bp
chr10 124266241 124266241 1 + C T UCEC 124266239 + 124266219 124266259 41 GTCCTGCTGCTTGGCCGCTCCTCAGAGCTGCGGCCGGGAGA GTCCTGCTGCTTGGCCGCTCCTTAGAGCTGCGGCCGGGAGA < 41bp 0.703764731891463 0.411423358409919 0.30144632 0.12948957 prediction 0.407529463782926 Functional Loss - HTRA1 ENSG00000166033 CDS Human protein_coding chr10:124266239 chr10:124266241 nonsynonymous SNV 0.959 3 23 hm5C_associated_SNPs_95457 0 0 0 0 1 HTRA1 chr10:124266207 3'AG 124266207 Downstream 35bp
chr4 74735480 74735480 1 + C T PRAD 74735477 + 74735457 74735497 41 CAAAGTGTGAACGTGAAGTCCCCCGGACCCCACTGCGCCCA CAAAGTGTGAACGTGAAGTCCCCTGGACCCCACTGCGCCCA < 41bp 0.725109211996143 0.521344902318274 0.18186694 0.15303105 prediction 0.407528619355736 Functional Loss - CXCL1 ENSG00000163739 CDS Human protein_coding chr4:74735477 chr4:74735480 synonymous SNV . 0 24 hm5C_associated_SNPs_95458 0 0 1 0 2 CXCL1 chr4:74735386 3'AG 74735386 Downstream 95bp
chr4 74735480 74735480 1 + C T PRAD 74735477 + 74735457 74735497 41 CAAAGTGTGAACGTGAAGTCCCCCGGACCCCACTGCGCCCA CAAAGTGTGAACGTGAAGTCCCCTGGACCCCACTGCGCCCA < 41bp 0.725109211996143 0.521344902318274 0.18186694 0.15303105 prediction 0.407528619355736 Functional Loss - CXCL1 ENSG00000163739 CDS Human protein_coding chr4:74735477 chr4:74735480 synonymous SNV . 0 24 hm5C_associated_SNPs_95458 0 0 1 0 2 CXCL1 chr4:74735509 5'GT 74735509 Upstream 30bp
chr12 123889487 123889487 1 + G A LGG 123889484 + 123889464 123889504 41 ATTGCCACCAAGCAGTTCTCCCGGGGTGACTTTGTGGTGGA ATTGCCACCAAGCAGTTCTCCCGAGGTGACTTTGTGGTGGA < 41bp 0.808498054998112 0.604735724654461 0.94207144 0.90617526 prediction 0.407524660687301 Functional Loss - KMT5A ENSG00000183955 CDS Human protein_coding chr12:123889484 chr12:123889487 synonymous SNV . 0 24 hm5C_associated_SNPs_95460 0 0 1 0 1 KMT5A chr12:123889431 3'AG 123889431 Downstream 57bp
chr6 52530142 52530142 1 + C T UCEC 52530139 + 52530119 52530159 41 TGAAGAGGTCGTGGACCATCCCCCAAAATGAATCCCAACAC TGAAGAGGTCGTGGACCATCCCCTAAAATGAATCCCAACAC < 41bp 0.703755504794929 0.483746747066337 0.10849911 0.11597112 prediction 0.407511009589859 Functional Loss - LOC730101 ENSG00000216775 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:52530139 chr6:52530142 . . 0 24 hm5C_associated_SNPs_95464 0 0 1 2 1 LOC730101 chr6:52530217 5'GT 52530217 Upstream 76bp
chr11 63312136 63312136 1 + G A BLCA 63312133 + 63312113 63312153 41 TCCTCCAGTGTCTTCTCAGTCCTGAGCAACAGTGCAGAGGT TCCTCCAGTGTCTTCTCAGTCCTAAGCAACAGTGCAGAGGT < 41bp 0.703754067895822 0.4543232482564 0.26156503 0.22361928 prediction 0.407508135791644 Functional Loss - RARRES3 ENSG00000133321 CDS Human protein_coding chr11:63312133 chr11:63312136 synonymous SNV . 0 24 hm5C_associated_SNPs_95467 0 0 0 0 1 RARRES3 chr11:63312093 3'AG 63312093 Downstream 44bp
chr2 233246305 233246305 1 + C T SKCM 233246302 + 233246282 233246322 41 TCGCGCGCGGCCCGCAGGCGCACCTGGTTCACGGCGTGCAG TCGCGCGCGGCCCGCAGGCGCACTTGGTTCACGGCGTGCAG < 41bp 0.712758252304191 0.509005172516839 0.19452497 0.26461834 prediction 0.407506159574704 Functional Loss - ALPP ENSG00000163283 CDS Human protein_coding chr2:233246302 chr2:233246305 synonymous SNV . 0 24 hm5C_associated_SNPs_95468 0 0 0 0 1 ALPP chr2:233246207 3'AG 233246207 Downstream 99bp
chrX 36103562 36103562 1 + G T LUAD 36103559 + 36103539 36103579 41 TTTGAGTGGAAAAATGCCACCTGGAATTAATTCAAGTCAAT TTTGAGTGGAAAAATGCCACCTGTAATTAATTCAAGTCAAT < 41bp 0.703748929348014 0.326922318437198 0.09264958 0.05763042 prediction 0.407497858696029 Functional Loss - CFAP47 ENSG00000176034 CDS Human other chrX:36103559 chrX:36103562 nonsynonymous SNV 0.945 3 24 hm5C_associated_SNPs_95470 0 0 0 0 1 CFAP47 chrX:36103655 5'GT 36103655 Upstream 94bp
chrX 36103561 36103561 1 + G T LUAD 36103559 + 36103539 36103579 41 TTTGAGTGGAAAAATGCCACCTGGAATTAATTCAAGTCAAT TTTGAGTGGAAAAATGCCACCTTGAATTAATTCAAGTCAAT < 41bp 0.703748929348014 0.374962617581528 0.09264958 0.04471609 prediction 0.407497858696029 Functional Loss - CFAP47 ENSG00000176034 CDS Human other chrX:36103559 chrX:36103561 stopgain 0.951 0 23 hm5C_associated_SNPs_95471 0 0 0 0 1 CFAP47 chrX:36103655 5'GT 36103655 Upstream 95bp
chr7 141843585 141843585 1 + C T rs376908510 141843582 + 141843562 141843602 41 GTCCTAGGGATATCCGGGACCGACAGTCTTTCCCGATTATA GTCCTAGGGATATCCGGGACCGATAGTCTTTCCCGATTATA < 41bp 0.704108107552842 0.500359573180366 0.3121388 0.3801293 prediction 0.407497068744952 Functional Loss - MGAM2 ENSG00000257743 CDS Human protein_coding chr7:141843582 chr7:141843585 nonsynonymous SNV 0.453 3 24 hm5C_associated_SNPs_95472 0 0 0 0 1 MGAM2 chr7:141843569 3'AG 141843569 Downstream 17bp
chr4 59432 59432 1 + G T LUSC 59430 + 59410 59450 41 GATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGGG GATGTGATGTTGGAGAACTACATGAACCTGGTCTCCCTGGG < 41bp 0.914317249689804 0.710568911006189 0.654413 0.2199519 prediction 0.407496677367229 Functional Loss - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:59430 chr4:59432 nonsynonymous SNV 0.612 3 23 hm5C_associated_SNPs_95473 0 0 1 0 1 ZNF595;ZNF718 chr4:59449 5'GT 59449 Upstream 18bp
chr1 158152928 158152928 1 + G A UCEC 158152925 + 158152905 158152945 41 AGCACAGCAGTCTAGAGGGCCAGGACATCGTCCTCTACTGG AGCACAGCAGTCTAGAGGGCCAGAACATCGTCCTCTACTGG < 41bp 0.703744768347531 0.450293415420608 0.8214326 0.25473863 prediction 0.407489536695063 Functional Loss - CD1D ENSG00000158473 CDS Human protein_coding chr1:158152925 chr1:158152928 nonsynonymous SNV 0.978 4 24 hm5C_associated_SNPs_95475 0 0 0 0 1 CD1D chr1:158152946 5'GT 158152946 Upstream 19bp
chr15 27188394 27188394 1 + A C UCEC 27188393 + 27188373 27188413 41 GTGCTGACCATGACGACCCTCAGCATCAGCGCCAGGAACTC GTGCTGACCATGACGACCCTCCGCATCAGCGCCAGGAACTC < 41bp 0.848038657348286 0.644294005860189 0.2123403 0.24649781 prediction 0.407489302976194 Functional Loss - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27188393 chr15:27188394 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_95476 0 0 0 0 1 GABRA5 chr15:27188362 3'AG 27188362 Downstream 33bp
chr1 156838002 156838002 1 + G C BLCA 156837999 + 156837979 156838019 41 CTGAACAGAAGCTGCAGTGTCATGGGCAAGGGCCCCTGGCC CTGAACAGAAGCTGCAGTGTCATCGGCAAGGGCCCCTGGCC < 41bp 0.742302366370526 0.538558883395073 0.64311844 0.11999586 prediction 0.407486965950905 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156837999 chr1:156838002 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_95478 0 0 0 0 1 NTRK1 chr1:156838041 5'GT 156838041 Upstream 40bp
chr1 84948637 84948637 1 + C T CESC 84948634 + 84948614 84948654 41 TACCCAAGACCATTGACAACCAGCGAGTGTATGATGAAACC TACCCAAGACCATTGACAACCAGTGAGTGTATGATGAAACC < 41bp 0.760036141865135 0.556295130819639 0.18479714 0.05372113 prediction 0.407482022090992 Functional Loss - RPF1 ENSG00000117133 CDS Human protein_coding chr1:84948634 chr1:84948637 stopgain 0.999 1 24 hm5C_associated_SNPs_95480 0 0 1 0 2 RPF1 chr1:84948598 3'AG 84948598 Downstream 40bp
chr1 84948637 84948637 1 + C T CESC 84948634 + 84948614 84948654 41 TACCCAAGACCATTGACAACCAGCGAGTGTATGATGAAACC TACCCAAGACCATTGACAACCAGTGAGTGTATGATGAAACC < 41bp 0.760036141865135 0.556295130819639 0.18479714 0.05372113 prediction 0.407482022090992 Functional Loss - RPF1 ENSG00000117133 CDS Human protein_coding chr1:84948634 chr1:84948637 stopgain 0.999 1 24 hm5C_associated_SNPs_95480 0 0 1 0 2 RPF1 chr1:84948678 5'GT 84948678 Upstream 42bp
chr1 64936601 64936601 1 + G A UCEC 64936598 + 64936578 64936618 41 CAGATGCGGAGGCTGGCGGCCGAGGAGCTGGGGGTCGTCAC CAGATGCGGAGGCTGGCGGCCGAAGAGCTGGGGGTCGTCAC < 41bp 0.802028061414958 0.598287431508214 0.91593087 0.8988188 prediction 0.407481259813487 Functional Loss - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:64936598 chr1:64936601 synonymous SNV . 0 24 hm5C_associated_SNPs_95481 0 0 1 0 1 CACHD1 chr1:64936625 5'GT 64936625 Upstream 25bp
chr7 143036387 143036387 1 + C T UCEC 143036384 + 143036364 143036404 41 GCCACCACTATGCCCATACCCTGCGGAGGCTTCATGCCTGT GCCACCACTATGCCCATACCCTGTGGAGGCTTCATGCCTGT < 41bp 0.768471801008855 0.564736459824182 0.15966949 0.030880213 prediction 0.407470682369346 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143036384 chr7:143036387 synonymous SNV . 0 24 hm5C_associated_SNPs_95487 0 0 0 0 2 CLCN1 chr7:143036346 3'AG 143036346 Downstream 42bp
chr7 143036387 143036387 1 + C T UCEC 143036384 + 143036364 143036404 41 GCCACCACTATGCCCATACCCTGCGGAGGCTTCATGCCTGT GCCACCACTATGCCCATACCCTGTGGAGGCTTCATGCCTGT < 41bp 0.768471801008855 0.564736459824182 0.15966949 0.030880213 prediction 0.407470682369346 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143036384 chr7:143036387 synonymous SNV . 0 24 hm5C_associated_SNPs_95487 0 0 0 0 2 CLCN1 chr7:143036415 5'GT 143036415 Upstream 29bp
chrX 37545418 37545418 1 + C T SKCM 37545416 + 37545396 37545436 41 ACCTCAGCCGCGACCGCCCGCTCGTACTGCTGCTGCACCTG ACCTCAGCCGCGACCGCCCGCTTGTACTGCTGCTGCACCTG < 41bp 0.703734118853659 0.448544224400845 0.055947453 0.029230416 prediction 0.407468237707319 Functional Loss - XK ENSG00000047597 CDS Human protein_coding chrX:37545416 chrX:37545418 synonymous SNV . 0 23 hm5C_associated_SNPs_95489 0 0 1 0 1 XK chrX:37545459 5'GT 37545459 Upstream 42bp
chr3 43073835 43073835 1 + C T rs138304813 43073832 + 43073812 43073852 41 CTGCCTCTTGATGATCCTATCTGCGATGGCTGTCACCCGCT CTGCCTCTTGATGATCCTATCTGTGATGGCTGTCACCCGCT < 41bp 0.743324750844029 0.539591785208711 0.26722968 0.24066848 prediction 0.407465931270635 Functional Loss - FAM198A ENSG00000144649 CDS Human other chr3:43073832 chr3:43073835 nonsynonymous SNV 0.221 0 24 hm5C_associated_SNPs_95491 0 0 1 0 1 FAM198A chr3:43073759 3'AG 43073759 Downstream 77bp
chr12 45695844 45695844 1 + G A COAD 45695841 + 45695821 45695861 41 TTGTCCCCGATTTGGGATCACTGGAAAGTCAGCATGATTTT TTGTCCCCGATTTGGGATCACTGAAAAGTCAGCATGATTTT < 41bp 0.7037299163546 0.465905245835212 0.22036612 0.05042237 prediction 0.407459832709201 Functional Loss - ANO6 ENSG00000177119 CDS Human protein_coding chr12:45695841 chr12:45695844 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_95493 0 0 1 0 1 ANO6 chr12:45695876 5'GT 45695876 Upstream 33bp
chrX 155232627 155232627 1 + T C STAD 155232626 + 155232606 155232646 41 ATGGGCACCTGGCTCCTGGCCTGCATCTGCATCTGCACCTG ATGGGCACCTGGCTCCTGGCCCGCATCTGCATCTGCACCTG < 41bp 0.836374028619458 0.632645011098519 0.07082996 0.015776366 prediction 0.407458035041877 Functional Loss - IL9R ENSG00000124334 CDS Human protein_coding chrX:155232626 chrX:155232627 nonsynonymous SNV 0.010 2 22 hm5C_associated_SNPs_95495 0 0 0 0 3 IL9R chrX:155232547 3'AG 155232547 Downstream 81bp
chrX 155232627 155232627 1 + T C STAD 155232626 + 155232606 155232646 41 ATGGGCACCTGGCTCCTGGCCTGCATCTGCATCTGCACCTG ATGGGCACCTGGCTCCTGGCCCGCATCTGCATCTGCACCTG < 41bp 0.836374028619458 0.632645011098519 0.07082996 0.015776366 prediction 0.407458035041877 Functional Loss - IL9R ENSG00000124334 CDS Human protein_coding chrX:155232626 chrX:155232627 nonsynonymous SNV 0.010 2 22 hm5C_associated_SNPs_95495 0 0 0 0 3 IL9R chrX:155232571 3'AG 155232571 Downstream 57bp
chrX 155232627 155232627 1 + T C STAD 155232626 + 155232606 155232646 41 ATGGGCACCTGGCTCCTGGCCTGCATCTGCATCTGCACCTG ATGGGCACCTGGCTCCTGGCCCGCATCTGCATCTGCACCTG < 41bp 0.836374028619458 0.632645011098519 0.07082996 0.015776366 prediction 0.407458035041877 Functional Loss - IL9R ENSG00000124334 CDS Human protein_coding chrX:155232626 chrX:155232627 nonsynonymous SNV 0.010 2 22 hm5C_associated_SNPs_95495 0 0 0 0 3 IL9R chrX:155232684 5'GT 155232684 Upstream 58bp
chr17 78069070 78069070 1 + C T THYM 78069068 + 78069048 78069088 41 GTCCTGTCTCCCAGGTCAGGCTCGGGCAGCTGCTGAAGCAG GTCCTGTCTCCCAGGTCAGGCTTGGGCAGCTGCTGAAGCAG < 41bp 0.703726672892358 0.43756956628171 0.6158674 0.38434005 prediction 0.407453345784716 Functional Loss - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78069068 chr17:78069070 synonymous SNV . 0 23 hm5C_associated_SNPs_95496 0 0 0 0 1 CCDC40 chr17:78069062 3'AG 78069062 Downstream 9bp
chr1 26751895 26751895 1 + C T STAD 26751892 + 26751872 26751912 41 GGTCTGGAATCCATCCGTGTCACCGGACCTGGTGGAGTATT GGTCTGGAATCCATCCGTGTCACTGGACCTGGTGGAGTATT < 41bp 0.703723368796788 0.481088313156589 0.16725212 0.083498955 prediction 0.407446737593577 Functional Loss - LIN28A ENSG00000131914 CDS Human protein_coding chr1:26751892 chr1:26751895 synonymous SNV . 0 24 hm5C_associated_SNPs_95497 0 0 0 0 1 LIN28A chr1:26751978 5'GT 26751978 Upstream 84bp
chr1 11775193 11775193 1 + C T UCEC 11775190 + 11775170 11775210 41 TGGCAGGGACTTGCTGCGACCTGCGGGAGCATCTCTGCACA TGGCAGGGACTTGCTGCGACCTGTGGGAGCATCTCTGCACA < 41bp 0.766604713003282 0.562885049102563 0.53180975 0.21319908 prediction 0.407439327801437 Functional Loss - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11775190 chr1:11775193 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_95499 0 0 0 0 2 DRAXIN chr1:11775176 3'AG 11775176 Downstream 18bp
chr1 11775193 11775193 1 + C T UCEC 11775190 + 11775170 11775210 41 TGGCAGGGACTTGCTGCGACCTGCGGGAGCATCTCTGCACA TGGCAGGGACTTGCTGCGACCTGTGGGAGCATCTCTGCACA < 41bp 0.766604713003282 0.562885049102563 0.53180975 0.21319908 prediction 0.407439327801437 Functional Loss - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11775190 chr1:11775193 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_95499 0 0 0 0 2 DRAXIN chr1:11775265 5'GT 11775265 Upstream 73bp
chr2 3749172 3749172 1 + G A UCEC 3749169 + 3749149 3749189 41 CAGGAAGAAGAAGCCGTGATCAGGCAAAAGTGGATTCTCCC CAGGAAGAAGAAGCCGTGATCAGACAAAAGTGGATTCTCCC < 41bp 0.703715538392956 0.459248697159582 0.92225844 0.8775563 prediction 0.407431076785913 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3749169 chr2:3749172 synonymous SNV . 0 24 hm5C_associated_SNPs_95501 0 0 0 0 2 ALLC chr2:3749102 3'AG 3749102 Downstream 71bp
chr2 3749172 3749172 1 + G A UCEC 3749169 + 3749149 3749189 41 CAGGAAGAAGAAGCCGTGATCAGGCAAAAGTGGATTCTCCC CAGGAAGAAGAAGCCGTGATCAGACAAAAGTGGATTCTCCC < 41bp 0.703715538392956 0.459248697159582 0.92225844 0.8775563 prediction 0.407431076785913 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3749169 chr2:3749172 synonymous SNV . 0 24 hm5C_associated_SNPs_95501 0 0 0 0 2 ALLC chr2:3749226 5'GT 3749226 Upstream 55bp
chr17 42428095 42428095 1 + G A ESCA 42428092 + 42428072 42428112 41 CTCGGTCATGTGTCCGGACGCACGGTCCCGGTGCCCTGATG CTCGGTCATGTGTCCGGACGCACAGTCCCGGTGCCCTGATG < 41bp 0.840338145744057 0.636622960973319 0.29312915 0.14058033 prediction 0.407430369541477 Functional Loss - GRN ENSG00000030582 CDS Human protein_coding chr17:42428092 chr17:42428095 nonsynonymous SNV 0.126 0 24 hm5C_associated_SNPs_95502 1 0 1 0 2 GRN chr17:42428059 3'AG 42428059 Downstream 37bp
chr17 42428095 42428095 1 + G A ESCA 42428092 + 42428072 42428112 41 CTCGGTCATGTGTCCGGACGCACGGTCCCGGTGCCCTGATG CTCGGTCATGTGTCCGGACGCACAGTCCCGGTGCCCTGATG < 41bp 0.840338145744057 0.636622960973319 0.29312915 0.14058033 prediction 0.407430369541477 Functional Loss - GRN ENSG00000030582 CDS Human protein_coding chr17:42428092 chr17:42428095 nonsynonymous SNV 0.126 0 24 hm5C_associated_SNPs_95502 1 0 1 0 2 GRN chr17:42428168 5'GT 42428168 Upstream 74bp
chr9 127982945 127982945 1 + C T CESC 127982943 + 127982923 127982963 41 GCGGAGAGAGAGGTGCCCAGCCCGTGCAGGACACGAAGCTG GCGGAGAGAGAGGTGCCCAGCCTGTGCAGGACACGAAGCTG < 41bp 0.703710605970229 0.438690831039038 0.10607666 0.07244599 prediction 0.407421211940458 Functional Loss - RABEPK ENSG00000136933 CDS Human protein_coding chr9:127982943 chr9:127982945 synonymous SNV . 0 23 hm5C_associated_SNPs_95507 0 0 1 0 1 RABEPK chr9:127982979 5'GT 127982979 Upstream 35bp
chr13 53624444 53624444 1 + G A rs141366865 53624441 + 53624421 53624461 41 AGAGTTAACCTGACCACCAACACGATTGCTGTGACTCAAAC AGAGTTAACCTGACCACCAACACAATTGCTGTGACTCAAAC < 41bp 0.797451972268762 0.593742311835899 0.12845889 0.12526941 prediction 0.407419320865725 Functional Loss - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53624441 chr13:53624444 synonymous SNV . 0 24 hm5C_associated_SNPs_95508 0 0 0 0 1 OLFM4 chr13:53624356 3'AG 53624356 Downstream 89bp
chrX 16761937 16761937 1 + G T UCEC 16761934 + 16761914 16761954 41 CAGGAGGATGAGCTGCTAAGCAAGATGAGATTTGCCCTCGT CAGGAGGATGAGCTGCTAAGCAATATGAGATTTGCCCTCGT < 41bp 0.936894713622469 0.733190965177671 0.37937212 0.1329538 prediction 0.407407496889596 Functional Loss - SYAP1 ENSG00000169895 CDS Human protein_coding chrX:16761934 chrX:16761937 nonsynonymous SNV 0.977 1 24 hm5C_associated_SNPs_95511 0 0 1 0 1 SYAP1 chrX:16761963 5'GT 16761963 Upstream 27bp
chr6 28251948 28251948 1 + G T STAD 28251945 + 28251925 28251965 41 GAGAGGAGGCAGTGACAGTGCTGGAGAATCTAGAGACAGGA GAGAGGAGGCAGTGACAGTGCTGTAGAATCTAGAGACAGGA < 41bp 0.929885922508731 0.72618342005451 0.1346027 0.15996975 prediction 0.407405004908443 Functional Loss - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28251945 chr6:28251948 stopgain 0.450 0 24 hm5C_associated_SNPs_95512 0 0 1 0 1 PGBD1 chr6:28251986 5'GT 28251986 Upstream 39bp
chr3 183900562 183900562 1 + G A STAD 183900559 + 183900539 183900579 41 TCCCAGGATCAAGCGCATGGCAGGCATGAAGGAATCGCAGA TCCCAGGATCAAGCGCATGGCAGACATGAAGGAATCGCAGA < 41bp 0.703700906140359 0.461627435005367 0.41983852 0.2874557 prediction 0.407401812280718 Functional Loss - AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183900559 chr3:183900562 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_95514 0 0 1 0 2 AP2M1 chr3:183900545 3'AG 183900545 Downstream 18bp
chr3 183900562 183900562 1 + G A STAD 183900559 + 183900539 183900579 41 TCCCAGGATCAAGCGCATGGCAGGCATGAAGGAATCGCAGA TCCCAGGATCAAGCGCATGGCAGACATGAAGGAATCGCAGA < 41bp 0.703700906140359 0.461627435005367 0.41983852 0.2874557 prediction 0.407401812280718 Functional Loss - AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183900559 chr3:183900562 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_95514 0 0 1 0 2 AP2M1 chr3:183900656 5'GT 183900656 Upstream 95bp
chr14 23848315 23848315 1 + G T ESCA 23848311 + 23848291 23848331 41 GCAGCTGTGACCTCCCGGGACGGAGCTGCCATTGCTGCTTT GCAGCTGTGACCTCCCGGGACGGATCTGCCATTGCTGCTTT < 41bp 0.755638696124549 0.551939806910668 0.6757632 0.08854091 prediction 0.407397778427762 Functional Loss - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23848311 chr14:23848315 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_95517 0 0 0 0 2 CMTM5 chr14:23848240 3'AG 23848240 Downstream 76bp
chr14 23848315 23848315 1 + G T ESCA 23848311 + 23848291 23848331 41 GCAGCTGTGACCTCCCGGGACGGAGCTGCCATTGCTGCTTT GCAGCTGTGACCTCCCGGGACGGATCTGCCATTGCTGCTTT < 41bp 0.755638696124549 0.551939806910668 0.6757632 0.08854091 prediction 0.407397778427762 Functional Loss - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23848311 chr14:23848315 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_95517 0 0 0 0 2 CMTM5 chr14:23848332 5'GT 23848332 Upstream 18bp
chr1 40919907 40919907 1 + G A UCEC 40919904 + 40919884 40919924 41 CTCAGGATGCTGATGAGACCCAGGGCGAAAGTTTAGAGAGT CTCAGGATGCTGATGAGACCCAGAGCGAAAGTTTAGAGAGT < 41bp 0.769932835950598 0.566238071099087 0.8485038 0.37051302 prediction 0.40738952970302 Functional Loss - ZFP69B ENSG00000187801 CDS Human protein_coding chr1:40919904 chr1:40919907 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_95520 0 0 0 0 2 ZFP69B chr1:40919875 3'AG 40919875 Downstream 33bp
chr1 40919907 40919907 1 + G A UCEC 40919904 + 40919884 40919924 41 CTCAGGATGCTGATGAGACCCAGGGCGAAAGTTTAGAGAGT CTCAGGATGCTGATGAGACCCAGAGCGAAAGTTTAGAGAGT < 41bp 0.769932835950598 0.566238071099087 0.8485038 0.37051302 prediction 0.40738952970302 Functional Loss - ZFP69B ENSG00000187801 CDS Human protein_coding chr1:40919904 chr1:40919907 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_95520 0 0 0 0 2 ZFP69B chr1:40919960 5'GT 40919960 Upstream 54bp
chr8 36642105 36642105 1 + G T LUSC 36642102 + 36642082 36642122 41 GTTAAAAAATGGCAAATCATCAAGGGAACAGGAATTATCTT GTTAAAAAATGGCAAATCATCAATGGAACAGGAATTATCTT < 41bp 0.703694120683374 0.322192381831562 0.91436434 0.30739883 prediction 0.407388241366748 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36642102 chr8:36642105 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_95521 0 0 0 0 1 KCNU1 chr8:36642123 5'GT 36642123 Upstream 19bp
chr5 140024251 140024251 1 + C T STAD 140024249 + 140024229 140024269 41 GCTTCCCGCCTTGCTGCACACACTAGCCTTTTCTGACACTG GCTTCCCGCCTTGCTGCACACATTAGCCTTTTCTGACACTG < 41bp 0.703688743333576 0.424312291391878 0.010810375 0.012578338 prediction 0.407377486667152 Functional Loss - TMCO6 ENSG00000113119 CDS Human protein_coding chr5:140024249 chr5:140024251 synonymous SNV . 0 23 hm5C_associated_SNPs_95526 0 0 1 0 2 TMCO6 chr5:140024158 3'AG 140024158 Downstream 94bp
chr5 140024251 140024251 1 + C T STAD 140024249 + 140024229 140024269 41 GCTTCCCGCCTTGCTGCACACACTAGCCTTTTCTGACACTG GCTTCCCGCCTTGCTGCACACATTAGCCTTTTCTGACACTG < 41bp 0.703688743333576 0.424312291391878 0.010810375 0.012578338 prediction 0.407377486667152 Functional Loss - TMCO6 ENSG00000113119 CDS Human protein_coding chr5:140024249 chr5:140024251 synonymous SNV . 0 23 hm5C_associated_SNPs_95526 0 0 1 0 2 TMCO6 chr5:140024325 5'GT 140024325 Upstream 75bp
chr1 162326880 162326880 1 + A T LUAD 162326876 + 162326856 162326896 41 ACCACCAGATGCAGCTCCTCCAGCAGCTCCTCCAGCAGCAG ACCACCAGATGCAGCTCCTCCAGCTGCTCCTCCAGCAGCAG < 41bp 0.703688348828209 0.379885143320192 0.24726504 0.518598 prediction 0.407376697656419 Functional Loss - NOS1AP ENSG00000198929 CDS Human protein_coding chr1:162326876 chr1:162326880 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_95527 0 0 1 0 1 NOS1AP chr1:162326926 5'GT 162326926 Upstream 47bp
chr14 73406579 73406579 1 + G A rs35802342 73406576 + 73406556 73406596 41 GATGACGAGTCTCCGTCAACCTCGTCTGGCACAGCTGGGAC GATGACGAGTCTCCGTCAACCTCATCTGGCACAGCTGGGAC < 41bp 0.824192828635934 0.620504936179516 0.17997807 0.12717363 prediction 0.407375784912836 Functional Loss - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73406576 chr14:73406579 synonymous SNV . 0 24 hm5C_associated_SNPs_95528 0 0 0 0 2 DCAF4 chr14:73406510 3'AG 73406510 Downstream 70bp
chr14 73406579 73406579 1 + G A rs35802342 73406576 + 73406556 73406596 41 GATGACGAGTCTCCGTCAACCTCGTCTGGCACAGCTGGGAC GATGACGAGTCTCCGTCAACCTCATCTGGCACAGCTGGGAC < 41bp 0.824192828635934 0.620504936179516 0.17997807 0.12717363 prediction 0.407375784912836 Functional Loss - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73406576 chr14:73406579 synonymous SNV . 0 24 hm5C_associated_SNPs_95528 0 0 0 0 2 DCAF4 chr14:73406610 5'GT 73406610 Upstream 32bp
chr15 71302271 71302271 1 + G A SKCM 71302268 + 71302248 71302288 41 CCAGTTGTCAATTTTACACTCTGGAAATACTATGTACTGTT CCAGTTGTCAATTTTACACTCTGAAAATACTATGTACTGTT < 41bp 0.703687166755367 0.477846637855484 0.036675513 0.07943365 prediction 0.407374333510734 Functional Loss - LRRC49 ENSG00000137821 CDS Human protein_coding chr15:71302268 chr15:71302271 stopgain 1.000 1 24 hm5C_associated_SNPs_95529 0 0 0 0 1 LRRC49 chr15:71302331 5'GT 71302331 Upstream 61bp
chr12 121432117 121432117 1 + G C rs56348580 121432114 + 121432094 121432134 41 CTGGCCATGGACACGTACAGCGGGCCCCCCCCAGGGCCAGG CTGGCCATGGACACGTACAGCGGCCCCCCCCCAGGGCCAGG < 41bp 0.733523079849932 0.529839376426189 0.6822932 0.38602635 prediction 0.407367406847486 Functional Loss - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121432114 chr12:121432117 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_95533 2 0 0 0 1 HNF1A chr12:121432208 5'GT 121432208 Upstream 92bp
chr16 67237075 67237075 1 + G C HNSC 67237071 + 67237051 67237091 41 AACCACAAGCTGCTGCAGTACGGAGACATGGAGGAGGGCGC AACCACAAGCTGCTGCAGTACGGACACATGGAGGAGGGCGC < 41bp 0.703679645209839 0.40554707188246 0.8784297 0.5841291 prediction 0.407359290419678 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67237071 chr16:67237075 nonsynonymous SNV 0.984 4 25 hm5C_associated_SNPs_95536 0 0 1 0 2 ELMO3 chr16:67237022 3'AG 67237022 Downstream 54bp
chr16 67237075 67237075 1 + G C HNSC 67237071 + 67237051 67237091 41 AACCACAAGCTGCTGCAGTACGGAGACATGGAGGAGGGCGC AACCACAAGCTGCTGCAGTACGGACACATGGAGGAGGGCGC < 41bp 0.703679645209839 0.40554707188246 0.8784297 0.5841291 prediction 0.407359290419678 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67237071 chr16:67237075 nonsynonymous SNV 0.984 4 25 hm5C_associated_SNPs_95536 0 0 1 0 2 ELMO3 chr16:67237126 5'GT 67237126 Upstream 52bp
chr6 144109947 144109947 1 + G A STAD 144109944 + 144109924 144109964 41 CACAGTGGCAGAGCTACAAGCTCGAAGGATCCTGCGATTTA CACAGTGGCAGAGCTACAAGCTCAAAGGATCCTGCGATTTA < 41bp 0.772509748282916 0.56883102979881 0.38840172 0.2695169 prediction 0.407357436968211 Functional Loss - PHACTR2 ENSG00000112419 CDS Human protein_coding chr6:144109944 chr6:144109947 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_95537 0 0 1 0 1 PHACTR2 chr6:144109910 3'AG 144109910 Downstream 38bp
chr16 1389514 1389514 1 + G A KIRC 1389511 + 1389491 1389531 41 CTGCAGGTGGAGATGCTCTACGAGGAGGCCCTGTACACGGT CTGCAGGTGGAGATGCTCTACGAAGAGGCCCTGTACACGGT < 41bp 0.822975232477632 0.619298896927072 0.42776808 0.13814807 prediction 0.40735267110112 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1389511 chr16:1389514 synonymous SNV . 0 24 hm5C_associated_SNPs_95540 0 0 0 0 2 BAIAP3 chr16:1389497 3'AG 1389497 Downstream 18bp
chr16 1389514 1389514 1 + G A KIRC 1389511 + 1389491 1389531 41 CTGCAGGTGGAGATGCTCTACGAGGAGGCCCTGTACACGGT CTGCAGGTGGAGATGCTCTACGAAGAGGCCCTGTACACGGT < 41bp 0.822975232477632 0.619298896927072 0.42776808 0.13814807 prediction 0.40735267110112 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1389511 chr16:1389514 synonymous SNV . 0 24 hm5C_associated_SNPs_95540 0 0 0 0 2 BAIAP3 chr16:1389604 5'GT 1389604 Upstream 91bp
chr2 120012344 120012344 1 + G A rs188660715 120012341 + 120012321 120012361 41 TCTCCCTGGGAGTGCTGGCCCTCGGCACGTTGTCCCTGCTG TCTCCCTGGGAGTGCTGGCCCTCAGCACGTTGTCCCTGCTG < 41bp 0.831693611353686 0.628018686082496 0.29918227 0.10078046 prediction 0.40734985054238 Functional Loss - STEAP3 ENSG00000115107 CDS Human protein_coding chr2:120012341 chr2:120012344 nonsynonymous SNV 0.555 4 24 hm5C_associated_SNPs_95542 0 0 1 0 2 STEAP3 chr2:120012260 3'AG 120012260 Downstream 85bp
chr2 120012344 120012344 1 + G A rs188660715 120012341 + 120012321 120012361 41 TCTCCCTGGGAGTGCTGGCCCTCGGCACGTTGTCCCTGCTG TCTCCCTGGGAGTGCTGGCCCTCAGCACGTTGTCCCTGCTG < 41bp 0.831693611353686 0.628018686082496 0.29918227 0.10078046 prediction 0.40734985054238 Functional Loss - STEAP3 ENSG00000115107 CDS Human protein_coding chr2:120012341 chr2:120012344 nonsynonymous SNV 0.555 4 24 hm5C_associated_SNPs_95542 0 0 1 0 2 STEAP3 chr2:120012424 5'GT 120012424 Upstream 81bp
chr15 91485698 91485698 1 + G A rs145502142 91485695 + 91485675 91485715 41 AACCCTGAGCATACTGGGAACTCGGCGAGTAGTCTCCATCC AACCCTGAGCATACTGGGAACTCAGCGAGTAGTCTCCATCC < 41bp 0.703673484300062 0.451041817590629 0.3693651 0.13857439 prediction 0.407346968600125 Functional Loss - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91485695 chr15:91485698 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_95543 0 0 1 0 1 UNC45A chr15:91485667 3'AG 91485667 Downstream 32bp
chr15 91485697 91485697 1 + C T LUAD 91485695 + 91485675 91485715 41 AACCCTGAGCATACTGGGAACTCGGCGAGTAGTCTCCATCC AACCCTGAGCATACTGGGAACTTGGCGAGTAGTCTCCATCC < 41bp 0.703673484300062 0.422369685800915 0.3693651 0.17227459 prediction 0.407346968600125 Functional Loss - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91485695 chr15:91485697 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_95544 0 0 1 0 1 UNC45A chr15:91485667 3'AG 91485667 Downstream 31bp
chr19 4290479 4290479 1 + G A LUAD 4290476 + 4290456 4290496 41 CTTCCTGCATCTGAAGTTCGCGCGGACCCGTGAGAACCAGG CTTCCTGCATCTGAAGTTCGCGCAGACCCGTGAGAACCAGG < 41bp 0.815218505640183 0.611545213669374 0.6097488 0.32173395 prediction 0.407346583941617 Functional Loss - SHD ENSG00000105251 CDS Human protein_coding chr19:4290476 chr19:4290479 nonsynonymous SNV 0.294 0 24 hm5C_associated_SNPs_95545 0 0 0 0 1 SHD chr19:4290444 3'AG 4290444 Downstream 36bp
chr5 149006830 149006830 1 + C T rs145012904 149006827 + 149006807 149006847 41 AGCGGCCGCTGGCTGGTGGACACCGGGGGTACGTGAGCCTT AGCGGCCGCTGGCTGGTGGACACTGGGGGTACGTGAGCCTT < 41bp 0.703672906848973 0.486536380862244 0.86588144 0.82275933 prediction 0.407345813697947 Functional Loss - ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:149006827 chr5:149006830 synonymous SNV . 0 24 hm5C_associated_SNPs_95546 0 0 0 0 1 ARHGEF37 chr5:149006834 5'GT 149006834 Upstream 5bp
chr3 140401373 140401373 1 + C T LUSC 140401370 + 140401350 140401390 41 GAAGTAAAGTCAATACCAGCCAACAGTCACCTGGTGAACCA GAAGTAAAGTCAATACCAGCCAATAGTCACCTGGTGAACCA < 41bp 0.761470459229126 0.557801798798604 0.26598257 0.8810771 prediction 0.407337320861045 Functional Loss - TRIM42 ENSG00000155890 CDS Human protein_coding chr3:140401370 chr3:140401373 synonymous SNV . 0 24 hm5C_associated_SNPs_95548 0 0 0 0 1 TRIM42 chr3:140401304 3'AG 140401304 Downstream 70bp
chr4 158254422 158254422 1 + G T UCEC 158254420 + 158254400 158254440 41 GGTTCAGGTTGAAGGTCTCTCAGGAAATATAAAGTTTGACC GGTTCAGGTTGAAGGTCTCTCATGAAATATAAAGTTTGACC < 41bp 0.703667880442685 0.383603226924164 0.07991254 0.016568989 prediction 0.40733576088537 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158254420 chr4:158254422 stopgain 0.998 1 23 hm5C_associated_SNPs_95549 0 0 0 3 2 GRIA2 chr4:158254401 3'AG 158254401 Downstream 22bp
chr4 158254422 158254422 1 + G T UCEC 158254420 + 158254400 158254440 41 GGTTCAGGTTGAAGGTCTCTCAGGAAATATAAAGTTTGACC GGTTCAGGTTGAAGGTCTCTCATGAAATATAAAGTTTGACC < 41bp 0.703667880442685 0.383603226924164 0.07991254 0.016568989 prediction 0.40733576088537 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158254420 chr4:158254422 stopgain 0.998 1 23 hm5C_associated_SNPs_95549 0 0 0 3 2 GRIA2 chr4:158254505 5'GT 158254505 Upstream 84bp
chr3 10183797 10183797 1 + T C KIRC 10183796 + 10183776 10183816 41 GCGTCGTGCTGCCCGTATGGCTCAACTTCGACGGCGAGCCG GCGTCGTGCTGCCCGTATGGCCCAACTTCGACGGCGAGCCG < 41bp 0.805746337136419 0.602079020672464 0.105397075 0.042181045 prediction 0.40733463292791 Functional Loss - VHL ENSG00000134086 CDS Human protein_coding chr3:10183796 chr3:10183797 nonsynonymous SNV 0.991 5 22 hm5C_associated_SNPs_95550 2 0 1 0 1 VHL chr3:10183871 5'GT 10183871 Upstream 75bp
chrX 70824440 70824440 1 + C T rs772284740 70824437 + 70824417 70824457 41 GACCAAAAATATAGTGGAGCCACCAAGGAAAAGGCAGACAA GACCAAAAATATAGTGGAGCCACTAAGGAAAAGGCAGACAA < 41bp 0.774501568833885 0.570838188738645 0.11251679 0.060827553 prediction 0.407326760190481 Functional Loss - GCNA ENSG00000147174 CDS Human protein_coding chrX:70824437 chrX:70824440 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_95552 0 0 0 0 1 GCNA chrX:70824526 5'GT 70824526 Upstream 87bp
chr19 45910444 45910444 1 + G A SARC 45910441 + 45910421 45910461 41 CCTTGGAGGCGCTGACGGGTCCAGATACGGAGCTGTGGCTT CCTTGGAGGCGCTGACGGGTCCAAATACGGAGCTGTGGCTT < 41bp 0.837231695355856 0.633570559586073 0.17248261 0.028505802 prediction 0.407322271539565 Functional Loss - CD3EAP ENSG00000117877 CDS Human protein_coding chr19:45910441 chr19:45910444 nonsynonymous SNV 0.400 3 24 hm5C_associated_SNPs_95554 0 0 1 0 2 CD3EAP chr19:45910352 3'AG 45910352 Downstream 93bp
chr19 45910444 45910444 1 + G A SARC 45910441 + 45910421 45910461 41 CCTTGGAGGCGCTGACGGGTCCAGATACGGAGCTGTGGCTT CCTTGGAGGCGCTGACGGGTCCAAATACGGAGCTGTGGCTT < 41bp 0.837231695355856 0.633570559586073 0.17248261 0.028505802 prediction 0.407322271539565 Functional Loss - CD3EAP ENSG00000117877 CDS Human protein_coding chr19:45910441 chr19:45910444 nonsynonymous SNV 0.400 3 24 hm5C_associated_SNPs_95554 0 0 1 0 2 CD3EAP chr19:45910493 5'GT 45910493 Upstream 50bp
chr16 24902287 24902287 1 + G T LUSC 24902285 + 24902265 24902305 41 ACAGCAGCTGCGGGCTGCCCCGGGAAGATGCCTTCCATATT ACAGCAGCTGCGGGCTGCCCCGTGAAGATGCCTTCCATATT < 41bp 0.920310833133286 0.716650596306605 0.92372394 0.65049165 prediction 0.407320473653362 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24902285 chr16:24902287 synonymous SNV . 0 23 hm5C_associated_SNPs_95555 0 0 0 0 1 SLC5A11 chr16:24902190 3'AG 24902190 Downstream 98bp
chr17 40940201 40940201 1 + G A SKCM 40940198 + 40940178 40940218 41 CCTGGAAGTGACTTTTCCCCCGGGGACAGGTATGTTCTGGT CCTGGAAGTGACTTTTCCCCCGGAGACAGGTATGTTCTGGT < 41bp 0.703658977493841 0.45637795317229 0.8890125 0.6523096 prediction 0.407317954987682 Functional Loss - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40940198 chr17:40940201 synonymous SNV . 0 24 hm5C_associated_SNPs_95556 0 0 1 0 2 WNK4 chr17:40940148 3'AG 40940148 Downstream 54bp
chr17 40940201 40940201 1 + G A SKCM 40940198 + 40940178 40940218 41 CCTGGAAGTGACTTTTCCCCCGGGGACAGGTATGTTCTGGT CCTGGAAGTGACTTTTCCCCCGGAGACAGGTATGTTCTGGT < 41bp 0.703658977493841 0.45637795317229 0.8890125 0.6523096 prediction 0.407317954987682 Functional Loss - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40940198 chr17:40940201 synonymous SNV . 0 24 hm5C_associated_SNPs_95556 0 0 1 0 2 WNK4 chr17:40940206 5'GT 40940206 Upstream 6bp
chrX 77378727 77378727 1 + G A LUSC 77378724 + 77378704 77378744 41 CTGTTTGATGAAGAGGGAGCCAAGATTGTCAAAGACCTAAT CTGTTTGATGAAGAGGGAGCCAAAATTGTCAAAGACCTAAT < 41bp 0.782956787782157 0.579298364789829 0.31515872 0.07394627 prediction 0.407316845984657 Functional Loss - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378724 chrX:77378727 synonymous SNV . 0 24 hm5C_associated_SNPs_95557 0 0 1 2 1 PGK1 chrX:77378692 3'AG 77378692 Downstream 36bp
chr21 47319533 47319533 1 + G A UCEC 47319530 + 47319510 47319550 41 CAGGAAGTTGGAAGCATCATCGGGAAGGTAATTATTGATTG CAGGAAGTTGGAAGCATCATCGGAAAGGTAATTATTGATTG < 41bp 0.80219799318641 0.598540189280448 0.8856363 0.79235995 prediction 0.407315607811924 Functional Loss - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47319530 chr21:47319533 synonymous SNV . 0 24 hm5C_associated_SNPs_95558 0 0 0 0 2 PCBP3 chr21:47319513 3'AG 47319513 Downstream 21bp
chr21 47319533 47319533 1 + G A UCEC 47319530 + 47319510 47319550 41 CAGGAAGTTGGAAGCATCATCGGGAAGGTAATTATTGATTG CAGGAAGTTGGAAGCATCATCGGAAAGGTAATTATTGATTG < 41bp 0.80219799318641 0.598540189280448 0.8856363 0.79235995 prediction 0.407315607811924 Functional Loss - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47319530 chr21:47319533 synonymous SNV . 0 24 hm5C_associated_SNPs_95558 0 0 0 0 2 PCBP3 chr21:47319536 5'GT 47319536 Upstream 4bp
chr4 40339294 40339294 1 + C T PRAD 40339292 + 40339272 40339312 41 ATCTGGCACGATGCCTATCTCACGTGGGACCGAGATCAGTA ATCTGGCACGATGCCTATCTCATGTGGGACCGAGATCAGTA < 41bp 0.867274040474883 0.663624199821602 0.6071314 0.7188392 prediction 0.407299681306563 Functional Loss - CHRNA9 ENSG00000174343 CDS Human protein_coding chr4:40339292 chr4:40339294 nonsynonymous SNV 0.679 1 23 hm5C_associated_SNPs_95562 0 0 0 0 2 CHRNA9 chr4:40339227 3'AG 40339227 Downstream 68bp
chr4 40339294 40339294 1 + C T PRAD 40339292 + 40339272 40339312 41 ATCTGGCACGATGCCTATCTCACGTGGGACCGAGATCAGTA ATCTGGCACGATGCCTATCTCATGTGGGACCGAGATCAGTA < 41bp 0.867274040474883 0.663624199821602 0.6071314 0.7188392 prediction 0.407299681306563 Functional Loss - CHRNA9 ENSG00000174343 CDS Human protein_coding chr4:40339292 chr4:40339294 nonsynonymous SNV 0.679 1 23 hm5C_associated_SNPs_95562 0 0 0 0 2 CHRNA9 chr4:40339381 5'GT 40339381 Upstream 88bp
chr1 93297630 93297630 1 + A C rs145634330 93297626 + 93297606 93297646 41 ACCCCCTAGCGCCGCTGGGCCTGCAGGTCTCTGTCGAGCAG ACCCCCTAGCGCCGCTGGGCCTGCCGGTCTCTGTCGAGCAG < 41bp 0.925490214249384 0.721840692717065 0.07659629 0.05232054 prediction 0.407299043064639 Functional Loss - RPL5 ENSG00000122406 UTR5 Human protein_coding chr1:93297626 chr1:93297630 . . 0 25 hm5C_associated_SNPs_95563 1 0 1 0 1 RPL5 chr1:93297674 5'GT 93297674 Upstream 45bp
chr7 128358963 128358963 1 + G T COAD 128358959 + 128358939 128358979 41 CCTGCAGTTGAGGACAGTCACTGAGAAGATTTATTACCTAA CCTGCAGTTGAGGACAGTCACTGATAAGATTTATTACCTAA < 41bp 0.735400709700296 0.531753011334808 0.1538476 0.14554843 prediction 0.407295396730976 Functional Loss - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128358959 chr7:128358963 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_95565 0 0 0 0 2 FAM71F1 chr7:128358885 3'AG 128358885 Downstream 79bp
chr7 128358963 128358963 1 + G T COAD 128358959 + 128358939 128358979 41 CCTGCAGTTGAGGACAGTCACTGAGAAGATTTATTACCTAA CCTGCAGTTGAGGACAGTCACTGATAAGATTTATTACCTAA < 41bp 0.735400709700296 0.531753011334808 0.1538476 0.14554843 prediction 0.407295396730976 Functional Loss - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128358959 chr7:128358963 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_95565 0 0 0 0 2 FAM71F1 chr7:128358946 3'AG 128358946 Downstream 18bp
chr5 52780984 52780984 1 + C T OV 52780981 + 52780961 52781001 41 AGTGACAATGCCACTTATGCCAGCGAGTGTGCCATGAAGGA AGTGACAATGCCACTTATGCCAGTGAGTGTGCCATGAAGGA < 41bp 0.736898617121223 0.53325325435541 0.39511585 0.15635595 prediction 0.407290725531627 Functional Loss - FST ENSG00000134363 CDS Human protein_coding chr5:52780981 chr5:52780984 synonymous SNV . 0 24 hm5C_associated_SNPs_95566 0 0 1 0 1 FST chr5:52781057 5'GT 52781057 Upstream 74bp
chrX 13778755 13778755 1 + C T CESC 13778752 + 13778732 13778772 41 CAGGCAGTGCAGCCTCGAGGCTCCGCGGGGGCACTTCCTCC CAGGCAGTGCAGCCTCGAGGCTCTGCGGGGGCACTTCCTCC < 41bp 0.748275609344745 0.544631084445059 0.41850027 0.34730256 prediction 0.407289049799371 Functional Loss - OFD1 ENSG00000046651 CDS Human protein_coding chrX:13778752 chrX:13778755 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_95567 0 0 1 0 1 OFD1 chrX:13778839 5'GT 13778839 Upstream 85bp
chr3 43097765 43097765 1 + G A rs3732858 43097762 + 43097742 43097782 41 ACCCAGTGTTCTGGGAAAGCCAAGGCGGAGCCCAGGGGCTG ACCCAGTGTTCTGGGAAAGCCAAAGCGGAGCCCAGGGGCTG < 41bp 0.813367129724338 0.60972295765183 0.44055587 0.27035987 prediction 0.407288344145015 Functional Loss - FAM198A ENSG00000144649 CDS Human protein_coding chr3:43097762 chr3:43097765 nonsynonymous SNV 0.824 4 24 hm5C_associated_SNPs_95568 0 1 0 0 1 FAM198A chr3:43097668 3'AG 43097668 Downstream 98bp
chr16 31374564 31374564 1 + G T LUAD 31374562 + 31374542 31374582 41 TCGCTTTGGGGCGGCTCTGACAGTGCTGGGGGATGTGAATG TCGCTTTGGGGCGGCTCTGACATTGCTGGGGGATGTGAATG < 41bp 0.703641157503909 0.339242389032004 0.8503445 0.37054878 prediction 0.407282315007818 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31374562 chr16:31374564 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_95570 0 0 0 0 1 ITGAX chr16:31374486 3'AG 31374486 Downstream 79bp
chr3 126385992 126385992 1 + G T LUAD 126385990 + 126385970 126386010 41 CTCCCACTGCTTGAAGGAGGCAGCACAGCTTCTGGGGGCAT CTCCCACTGCTTGAAGGAGGCATCACAGCTTCTGGGGGCAT < 41bp 0.703634487006029 0.360712739533702 0.5993967 0.6645117 prediction 0.407268974012058 Functional Loss - NUP210P1 ENSG00000198284 ncRNA_exonic Human transcribed_processed_pseudogene chr3:126385990 chr3:126385992 . . 0 23 hm5C_associated_SNPs_95572 0 0 0 0 1 NUP210P1 chr3:126385949 3'AG 126385949 Downstream 44bp
chr3 126385991 126385991 1 + A C LUAD 126385990 + 126385970 126386010 41 CTCCCACTGCTTGAAGGAGGCAGCACAGCTTCTGGGGGCAT CTCCCACTGCTTGAAGGAGGCCGCACAGCTTCTGGGGGCAT < 41bp 0.703634487006029 0.447642589815128 0.5993967 0.3218295 prediction 0.407268974012058 Functional Loss - NUP210P1 ENSG00000198284 ncRNA_exonic Human transcribed_processed_pseudogene chr3:126385990 chr3:126385991 . . 0 22 hm5C_associated_SNPs_95573 0 0 0 0 1 NUP210P1 chr3:126385949 3'AG 126385949 Downstream 43bp
chr2 131103191 131103191 1 + G A LUSC 131103188 + 131103168 131103208 41 AGCGAATGAACCGAGGTCGACATGAAGTGGGGGCACTGGTG AGCGAATGAACCGAGGTCGACATAAAGTGGGGGCACTGGTG < 41bp 0.703634343374924 0.457755022701411 0.49853545 0.507788 prediction 0.407268686749848 Functional Loss - IMP4 ENSG00000136718 CDS Human protein_coding chr2:131103188 chr2:131103191 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_95574 0 0 1 0 2 IMP4 chr2:131103140 3'AG 131103140 Downstream 52bp
chr2 131103191 131103191 1 + G A LUSC 131103188 + 131103168 131103208 41 AGCGAATGAACCGAGGTCGACATGAAGTGGGGGCACTGGTG AGCGAATGAACCGAGGTCGACATAAAGTGGGGGCACTGGTG < 41bp 0.703634343374924 0.457755022701411 0.49853545 0.507788 prediction 0.407268686749848 Functional Loss - IMP4 ENSG00000136718 CDS Human protein_coding chr2:131103188 chr2:131103191 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_95574 0 0 1 0 2 IMP4 chr2:131103272 5'GT 131103272 Upstream 82bp
chr15 72105936 72105936 1 + G A ESCA 72105933 + 72105913 72105953 41 GGGCATTGGCGGTGGACCCCCACGGAGTTTGCCTGCATGAA GGGCATTGGCGGTGGACCCCCACAGAGTTTGCCTGCATGAA < 41bp 0.703627850806477 0.474301508738874 0.63991725 0.38470262 prediction 0.407255701612953 Functional Loss - NR2E3 ENSG00000031544 ncRNA_exonic Human other chr15:72105933 chr15:72105936 . . 0 24 hm5C_associated_SNPs_95578 1 0 0 0 1 NR2E3 chr15:72105976 5'GT 72105976 Upstream 41bp
chr6 160227065 160227065 1 + G T UCEC 160227061 + 160227041 160227081 41 TGGTGATTGACGAAGTGACGCGGTGGCTGGAGCTGGCCAAG TGGTGATTGACGAAGTGACGCGGTTGCTGGAGCTGGCCAAG < 41bp 0.703625818697821 0.488195547762655 0.6620118 0.51149994 prediction 0.407251637395641 Functional Loss - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160227061 chr6:160227065 nonsynonymous SNV 0.833 4 25 hm5C_associated_SNPs_95581 0 0 0 0 2 PNLDC1 chr6:160227015 3'AG 160227015 Downstream 51bp
chr6 160227065 160227065 1 + G T UCEC 160227061 + 160227041 160227081 41 TGGTGATTGACGAAGTGACGCGGTGGCTGGAGCTGGCCAAG TGGTGATTGACGAAGTGACGCGGTTGCTGGAGCTGGCCAAG < 41bp 0.703625818697821 0.488195547762655 0.6620118 0.51149994 prediction 0.407251637395641 Functional Loss - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160227061 chr6:160227065 nonsynonymous SNV 0.833 4 25 hm5C_associated_SNPs_95581 0 0 0 0 2 PNLDC1 chr6:160227115 5'GT 160227115 Upstream 51bp
chr12 71977609 71977609 1 + G T KIRC 71977605 + 71977585 71977625 41 ATCGCAGCAGTGAACATGCTCACGGGAGTCTCCAGTGCCGT ATCGCAGCAGTGAACATGCTCACGTGAGTCTCCAGTGCCGT < 41bp 0.732972232725578 0.529347494086944 0.9224919 0.8420912 prediction 0.407249477277269 Functional Loss - LGR5 ENSG00000139292 CDS Human protein_coding chr12:71977605 chr12:71977609 stopgain 0.006 1 25 hm5C_associated_SNPs_95583 0 0 1 0 1 LGR5 chr12:71977692 5'GT 71977692 Upstream 84bp
chr17 4844434 4844434 1 + G A CESC 4844431 + 4844411 4844451 41 CCAGCTCTGTTTGGGGCTACCTTGAGCCAGGAGGGCCTCCA CCAGCTCTGTTTGGGGCTACCTTAAGCCAGGAGGGCCTCCA < 41bp 0.808188855201385 0.60456743174122 0.28723907 0.2663344 prediction 0.407242846920329 Functional Loss - RNF167 ENSG00000108523 CDS Human protein_coding chr17:4844431 chr17:4844434 synonymous SNV . 0 24 hm5C_associated_SNPs_95585 0 0 1 0 2 RNF167 chr17:4844372 3'AG 4844372 Downstream 63bp
chr17 4844434 4844434 1 + G A CESC 4844431 + 4844411 4844451 41 CCAGCTCTGTTTGGGGCTACCTTGAGCCAGGAGGGCCTCCA CCAGCTCTGTTTGGGGCTACCTTAAGCCAGGAGGGCCTCCA < 41bp 0.808188855201385 0.60456743174122 0.28723907 0.2663344 prediction 0.407242846920329 Functional Loss - RNF167 ENSG00000108523 CDS Human protein_coding chr17:4844431 chr17:4844434 synonymous SNV . 0 24 hm5C_associated_SNPs_95585 0 0 1 0 2 RNF167 chr17:4844452 5'GT 4844452 Upstream 19bp
chr1 2492143 2492143 1 + C T LUSC 2492140 + 2492120 2492160 41 ATGGGACCCTGGAGGAATGTCAGCACCAGACCAAGTAAGTG ATGGGACCCTGGAGGAATGTCAGTACCAGACCAAGTAAGTG < 41bp 0.736353654458597 0.532733345406901 0.3837148 0.31897503 prediction 0.407240618103392 Functional Loss - TNFRSF14 ENSG00000157873 CDS Human protein_coding chr1:2492140 chr1:2492143 nonsynonymous SNV 0.081 0 24 hm5C_associated_SNPs_95586 0 0 1 0 2 TNFRSF14 chr1:2492063 3'AG 2492063 Downstream 81bp
chr1 2492143 2492143 1 + C T LUSC 2492140 + 2492120 2492160 41 ATGGGACCCTGGAGGAATGTCAGCACCAGACCAAGTAAGTG ATGGGACCCTGGAGGAATGTCAGTACCAGACCAAGTAAGTG < 41bp 0.736353654458597 0.532733345406901 0.3837148 0.31897503 prediction 0.407240618103392 Functional Loss - TNFRSF14 ENSG00000157873 CDS Human protein_coding chr1:2492140 chr1:2492143 nonsynonymous SNV 0.081 0 24 hm5C_associated_SNPs_95586 0 0 1 0 2 TNFRSF14 chr1:2492153 5'GT 2492153 Upstream 11bp
chr11 121028586 121028586 1 + C T UCEC 121028583 + 121028563 121028603 41 TTTGGAACAGCGACTGCACGCGGCGCTGCCGCTGTTTCCGT TTTGGAACAGCGACTGCACGCGGTGCTGCCGCTGTTTCCGT < 41bp 0.73675262924432 0.533133178139855 0.67550784 0.53976893 prediction 0.407238902208929 Functional Loss - TECTA ENSG00000109927 CDS Human protein_coding chr11:121028583 chr11:121028586 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_95588 0 0 0 0 1 TECTA chr11:121028550 3'AG 121028550 Downstream 37bp
chr10 81373017 81373017 1 + G A LUSC 81373014 + 81372994 81373034 41 TAGACATCAAATCCTGCAGACAAGGGGAGGTAAGGGGACCC TAGACATCAAATCCTGCAGACAAAGGGAGGTAAGGGGACCC < 41bp 0.70361726869353 0.462674766830471 0.3221901 0.24507254 prediction 0.40723453738706 Functional Loss - SFTPA1 ENSG00000122852 CDS Human protein_coding chr10:81373014 chr10:81373017 nonsynonymous SNV 0.856 1 24 hm5C_associated_SNPs_95590 0 0 0 0 3 SFTPA1 chr10:81372945 3'AG 81372945 Downstream 73bp
chr10 81373017 81373017 1 + G A LUSC 81373014 + 81372994 81373034 41 TAGACATCAAATCCTGCAGACAAGGGGAGGTAAGGGGACCC TAGACATCAAATCCTGCAGACAAAGGGAGGTAAGGGGACCC < 41bp 0.70361726869353 0.462674766830471 0.3221901 0.24507254 prediction 0.40723453738706 Functional Loss - SFTPA1 ENSG00000122852 CDS Human protein_coding chr10:81373014 chr10:81373017 nonsynonymous SNV 0.856 1 24 hm5C_associated_SNPs_95590 0 0 0 0 3 SFTPA1 chr10:81372978 3'AG 81372978 Downstream 40bp
chr10 81373017 81373017 1 + G A LUSC 81373014 + 81372994 81373034 41 TAGACATCAAATCCTGCAGACAAGGGGAGGTAAGGGGACCC TAGACATCAAATCCTGCAGACAAAGGGAGGTAAGGGGACCC < 41bp 0.70361726869353 0.462674766830471 0.3221901 0.24507254 prediction 0.40723453738706 Functional Loss - SFTPA1 ENSG00000122852 CDS Human protein_coding chr10:81373014 chr10:81373017 nonsynonymous SNV 0.856 1 24 hm5C_associated_SNPs_95590 0 0 0 0 3 SFTPA1 chr10:81373022 5'GT 81373022 Upstream 6bp
chr1 155015935 155015935 1 + G T KIRP 155015933 + 155015913 155015953 41 AGGCCCGGCTGGAGTGGGCCCTGGGGCTGCTGCACGTGCTG AGGCCCGGCTGGAGTGGGCCCTTGGGCTGCTGCACGTGCTG < 41bp 0.927264399569994 0.72364901879088 0.89772666 0.58298814 prediction 0.407230761558228 Functional Loss - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155015933 chr1:155015935 synonymous SNV . 0 23 hm5C_associated_SNPs_95593 0 0 0 0 1 DCST1 chr1:155015985 5'GT 155015985 Upstream 51bp
chr1 150256902 150256902 1 + A T UCEC 150256898 + 150256878 150256918 41 AGCGTATTGTAGGTGTTTTGCAGAAGCCACAGATGGGGTAA AGCGTATTGTAGGTGTTTTGCAGATGCCACAGATGGGGTAA < 41bp 0.901205131481914 0.697591134556979 0.8858884 0.8912546 prediction 0.407227993849871 Functional Loss - CIART ENSG00000159208 CDS Human protein_coding chr1:150256898 chr1:150256902 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_95594 0 0 0 0 2 CIART chr1:150256836 3'AG 150256836 Downstream 67bp
chr1 150256902 150256902 1 + A T UCEC 150256898 + 150256878 150256918 41 AGCGTATTGTAGGTGTTTTGCAGAAGCCACAGATGGGGTAA AGCGTATTGTAGGTGTTTTGCAGATGCCACAGATGGGGTAA < 41bp 0.901205131481914 0.697591134556979 0.8858884 0.8912546 prediction 0.407227993849871 Functional Loss - CIART ENSG00000159208 CDS Human protein_coding chr1:150256898 chr1:150256902 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_95594 0 0 0 0 2 CIART chr1:150256914 5'GT 150256914 Upstream 13bp
chr17 66040122 66040122 1 + C T LUSC 66040119 + 66040099 66040139 41 TGTCAAACATCACAGCCGGCCGCCAGGACCAGATACAGCAA TGTCAAACATCACAGCCGGCCGCTAGGACCAGATACAGCAA < 41bp 0.804653963959063 0.601041324342992 0.041004628 0.022648662 prediction 0.407225279232141 Functional Loss - KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66040119 chr17:66040122 stopgain 0.778 0 24 hm5C_associated_SNPs_95596 0 0 1 0 1 KPNA2 chr17:66040187 5'GT 66040187 Upstream 66bp
chr9 133960999 133960999 1 + G A rs201780404 133960996 + 133960976 133961016 41 AGTGACAGACTCCTTGCAGACACGAGAAAGAAGACCAAGCA AGTGACAGACTCCTTGCAGACACAAGAAAGAAGACCAAGCA < 41bp 0.792436920592966 0.588825748473291 0.2587515 0.21036416 prediction 0.40722234423935 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133960996 chr9:133960999 synonymous SNV . 0 24 hm5C_associated_SNPs_95598 0 0 0 0 2 LAMC3 chr9:133960911 3'AG 133960911 Downstream 89bp
chr9 133960999 133960999 1 + G A rs201780404 133960996 + 133960976 133961016 41 AGTGACAGACTCCTTGCAGACACGAGAAAGAAGACCAAGCA AGTGACAGACTCCTTGCAGACACAAGAAAGAAGACCAAGCA < 41bp 0.792436920592966 0.588825748473291 0.2587515 0.21036416 prediction 0.40722234423935 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133960996 chr9:133960999 synonymous SNV . 0 24 hm5C_associated_SNPs_95598 0 0 0 0 2 LAMC3 chr9:133960995 3'AG 133960995 Downstream 5bp
chr3 39166987 39166987 1 + C T STAD 39166984 + 39166964 39167004 41 CTGGACCCGTACTTCCTGGTCTGCATTGCTAAGGAGTACTT CTGGACCCGTACTTCCTGGTCTGTATTGCTAAGGAGTACTT < 41bp 0.703610506012866 0.476872758880987 0.16494167 0.10746512 prediction 0.407221012025733 Functional Loss - TTC21A ENSG00000168026 CDS Human protein_coding chr3:39166984 chr3:39166987 synonymous SNV . 0 24 hm5C_associated_SNPs_95599 0 0 0 0 1 TTC21A chr3:39167023 5'GT 39167023 Upstream 37bp
chr16 2820429 2820429 1 + C T rs116681042 2820426 + 2820406 2820446 41 GCTACTCGCCTGTGGAGCGTCGCCGTCCCTCGCCCCAGCCC GCTACTCGCCTGTGGAGCGTCGCTGTCCCTCGCCCCAGCCC < 41bp 0.730474404786795 0.526865150268897 0.1052953 0.037155032 prediction 0.407218509035796 Functional Loss - SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2820426 chr16:2820429 nonsynonymous SNV 0.914 0 24 hm5C_associated_SNPs_95601 0 0 1 0 2 SRRM2 chr16:2820353 3'AG 2820353 Downstream 77bp
chr16 2820429 2820429 1 + C T rs116681042 2820426 + 2820406 2820446 41 GCTACTCGCCTGTGGAGCGTCGCCGTCCCTCGCCCCAGCCC GCTACTCGCCTGTGGAGCGTCGCTGTCCCTCGCCCCAGCCC < 41bp 0.730474404786795 0.526865150268897 0.1052953 0.037155032 prediction 0.407218509035796 Functional Loss - SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2820426 chr16:2820429 nonsynonymous SNV 0.914 0 24 hm5C_associated_SNPs_95601 0 0 1 0 2 SRRM2 chr16:2820466 5'GT 2820466 Upstream 38bp
chrX 155235004 155235004 1 + T C UCEC 155235003 + 155234983 155235023 41 TTATACTTGAAGCCTTTGAGCTGGACCCTGGCTTTATCCAT TTATACTTGAAGCCTTTGAGCCGGACCCTGGCTTTATCCAT < 41bp 0.818531267635009 0.614923081710463 0.30910397 0.7381508 prediction 0.407216371849093 Functional Loss - IL9R ENSG00000124334 CDS Human protein_coding chrX:155235003 chrX:155235004 nonsynonymous SNV 0.008 3 22 hm5C_associated_SNPs_95603 0 0 0 0 1 IL9R chrX:155234943 3'AG 155234943 Downstream 62bp
chr19 15132642 15132642 1 + G A rs116113964 15132639 + 15132619 15132659 41 GTCCTCTGTCGAAAGTTCACCTGGAGACCGCAGAAAAGCTG GTCCTCTGTCGAAAGTTCACCTGAAGACCGCAGAAAAGCTG < 41bp 0.798773121763473 0.595172973372373 0.07892865 0.08447796 prediction 0.407200296782199 Functional Loss - CCDC105 ENSG00000160994 CDS Human protein_coding chr19:15132639 chr19:15132642 nonsynonymous SNV 0.316 1 24 hm5C_associated_SNPs_95606 0 0 0 0 1 CCDC105 chr19:15132731 5'GT 15132731 Upstream 90bp
chr10 116710908 116710908 1 + G A PAAD 116710905 + 116710885 116710925 41 ACCAGTATGTTGTCAGGGTCCAAGGTAAGAATACTGAAATA ACCAGTATGTTGTCAGGGTCCAAAGTAAGAATACTGAAATA < 41bp 0.703600107932198 0.485317607823752 0.38894963 0.187112 prediction 0.407200215864396 Functional Loss - TRUB1 ENSG00000165832 CDS Human protein_coding chr10:116710905 chr10:116710908 synonymous SNV . 0 24 hm5C_associated_SNPs_95607 0 0 1 0 2 TRUB1 chr10:116710853 3'AG 116710853 Downstream 56bp
chr10 116710908 116710908 1 + G A PAAD 116710905 + 116710885 116710925 41 ACCAGTATGTTGTCAGGGTCCAAGGTAAGAATACTGAAATA ACCAGTATGTTGTCAGGGTCCAAAGTAAGAATACTGAAATA < 41bp 0.703600107932198 0.485317607823752 0.38894963 0.187112 prediction 0.407200215864396 Functional Loss - TRUB1 ENSG00000165832 CDS Human protein_coding chr10:116710905 chr10:116710908 synonymous SNV . 0 24 hm5C_associated_SNPs_95607 0 0 1 0 2 TRUB1 chr10:116710908 5'GT 116710908 Upstream 1bp
chr8 35583731 35583731 1 + C T STAD 35583728 + 35583708 35583748 41 CTGACAGTGAGCCGGACATACAGCGGACCCATCTGTCTGCA CTGACAGTGAGCCGGACATACAGTGGACCCATCTGTCTGCA < 41bp 0.703597446027657 0.499127893931841 0.3894763 0.23113534 prediction 0.407194892055314 Functional Loss - UNC5D ENSG00000156687 CDS Human protein_coding chr8:35583728 chr8:35583731 synonymous SNV . 0 24 hm5C_associated_SNPs_95608 0 0 0 0 1 UNC5D chr8:35583670 3'AG 35583670 Downstream 62bp
chr16 67913505 67913505 1 + G A UCEC 67913502 + 67913482 67913522 41 CCCTGCAGCATTTGGAGAGTCTCGGCCCGAACTGGGCTCTG CCCTGCAGCATTTGGAGAGTCTCAGCCCGAACTGGGCTCTG < 41bp 0.814580243731287 0.610984418843406 0.7021704 0.38918006 prediction 0.407191649775763 Functional Loss - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67913502 chr16:67913505 nonsynonymous SNV 0.981 1 24 hm5C_associated_SNPs_95611 0 0 1 0 1 EDC4 chr16:67913490 3'AG 67913490 Downstream 16bp
chr2 120385305 120385305 1 + G A SKCM 120385302 + 120385282 120385322 41 AGCCGGTTCTCTGTGTCGCCCAAGGAGGTGCTGCCCTTCGC AGCCGGTTCTCTGTGTCGCCCAAAGAGGTGCTGCCCTTCGC < 41bp 0.844573842641989 0.640978948629632 0.8869054 0.19270521 prediction 0.407189788024714 Functional Loss - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120385302 chr2:120385305 synonymous SNV . 0 24 hm5C_associated_SNPs_95612 0 0 0 0 2 CFAP221 chr2:120385229 3'AG 120385229 Downstream 77bp
chr2 120385305 120385305 1 + G A SKCM 120385302 + 120385282 120385322 41 AGCCGGTTCTCTGTGTCGCCCAAGGAGGTGCTGCCCTTCGC AGCCGGTTCTCTGTGTCGCCCAAAGAGGTGCTGCCCTTCGC < 41bp 0.844573842641989 0.640978948629632 0.8869054 0.19270521 prediction 0.407189788024714 Functional Loss - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120385302 chr2:120385305 synonymous SNV . 0 24 hm5C_associated_SNPs_95612 0 0 0 0 2 CFAP221 chr2:120385362 5'GT 120385362 Upstream 58bp
chr5 1212545 1212545 1 + C T STAD 1212542 + 1212522 1212562 41 TGGATGCTGCTGTGCCTGGCCTGCGCATGGAGCGTCCTGTA TGGATGCTGCTGTGCCTGGCCTGTGCATGGAGCGTCCTGTA < 41bp 0.731162561727726 0.527570819318702 0.22403634 0.14252043 prediction 0.407183484818048 Functional Loss - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1212542 chr5:1212545 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_95614 0 0 0 0 1 SLC6A19 chr5:1212599 5'GT 1212599 Upstream 55bp
chr4 2701482 2701482 1 + C T CESC 2701479 + 2701459 2701499 41 ACCTCCAGGAGGAGCAGAGGCGGCGGGAGGAGGAGGAGGAT ACCTCCAGGAGGAGCAGAGGCGGTGGGAGGAGGAGGAGGAT < 41bp 0.744386352358805 0.540796057714335 0.9134673 0.90532005 prediction 0.407180589288941 Functional Loss - FAM193A ENSG00000125386 CDS Human protein_coding chr4:2701479 chr4:2701482 nonsynonymous SNV 0.431 2 24 hm5C_associated_SNPs_95615 0 0 0 0 1 FAM193A chr4:2701407 3'AG 2701407 Downstream 76bp
chr12 49938088 49938088 1 + C T LUSC 49938086 + 49938066 49938106 41 ATGGCCGTGTTCGCCCTGCTCGCGCACTGGGTCGCCTGCGT ATGGCCGTGTTCGCCCTGCTCGTGCACTGGGTCGCCTGCGT < 41bp 0.703587154825951 0.434701371931472 0.17598364 0.29322886 prediction 0.407174309651901 Functional Loss - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49938086 chr12:49938088 nonsynonymous SNV 0.966 5 23 hm5C_associated_SNPs_95619 0 0 0 0 1 KCNH3 chr12:49938165 5'GT 49938165 Upstream 78bp
chr9 93624537 93624537 1 + G A HNSC 93624534 + 93624514 93624554 41 CCTACGCCCTGTGCCTGCTGCACGAAGGGAAGGTGCTGCAC CCTACGCCCTGTGCCTGCTGCACAAAGGGAAGGTGCTGCAC < 41bp 0.824095398518824 0.620509533246877 0.41176093 0.21883222 prediction 0.407171730543895 Functional Loss - SYK ENSG00000165025 CDS Human protein_coding chr9:93624534 chr9:93624537 nonsynonymous SNV 0.914 2 24 hm5C_associated_SNPs_95621 0 0 0 0 2 SYK chr9:93624488 3'AG 93624488 Downstream 50bp
chr9 93624537 93624537 1 + G A HNSC 93624534 + 93624514 93624554 41 CCTACGCCCTGTGCCTGCTGCACGAAGGGAAGGTGCTGCAC CCTACGCCCTGTGCCTGCTGCACAAAGGGAAGGTGCTGCAC < 41bp 0.824095398518824 0.620509533246877 0.41176093 0.21883222 prediction 0.407171730543895 Functional Loss - SYK ENSG00000165025 CDS Human protein_coding chr9:93624534 chr9:93624537 nonsynonymous SNV 0.914 2 24 hm5C_associated_SNPs_95621 0 0 0 0 2 SYK chr9:93624626 5'GT 93624626 Upstream 90bp
chr22 21401734 21401734 1 + C T rs9620774 21401731 + 21401711 21401751 41 TTGTGCCCATCTCCTGCTTTCTGCGCCAAGGGAGCGCCCAA TTGTGCCCATCTCCTGCTTTCTGTGCCAAGGGAGCGCCCAA < 41bp 0.751453227191905 0.547870505698937 0.45068797 0.37882608 prediction 0.407165442985935 Functional Loss - LRRC74B ENSG00000187905 CDS Human protein_coding chr22:21401731 chr22:21401734 nonsynonymous SNV 0.006 1 24 hm5C_associated_SNPs_95624 0 0 0 0 2 LRRC74B chr22:21401645 3'AG 21401645 Downstream 90bp
chr22 21401734 21401734 1 + C T rs9620774 21401731 + 21401711 21401751 41 TTGTGCCCATCTCCTGCTTTCTGCGCCAAGGGAGCGCCCAA TTGTGCCCATCTCCTGCTTTCTGTGCCAAGGGAGCGCCCAA < 41bp 0.751453227191905 0.547870505698937 0.45068797 0.37882608 prediction 0.407165442985935 Functional Loss - LRRC74B ENSG00000187905 CDS Human protein_coding chr22:21401731 chr22:21401734 nonsynonymous SNV 0.006 1 24 hm5C_associated_SNPs_95624 0 0 0 0 2 LRRC74B chr22:21401787 5'GT 21401787 Upstream 54bp
chr19 56382322 56382322 1 + C T UCEC 56382319 + 56382299 56382339 41 GACGAAGGACTGAAAACTCTCTGCGAGGCCTTGAAACATCC GACGAAGGACTGAAAACTCTCTGTGAGGCCTTGAAACATCC < 41bp 0.703582484714495 0.484854037675603 0.2805196 0.1906389 prediction 0.40716496942899 Functional Loss - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56382319 chr19:56382322 synonymous SNV . 0 24 hm5C_associated_SNPs_95625 0 0 0 0 1 NLRP4 chr19:56382363 5'GT 56382363 Upstream 42bp
chr1 3544148 3544148 1 + C T COAD 3544145 + 3544125 3544165 41 AGATGGAATCCCTGGTCTACCAACGTGCCCTATGCCACTTT AGATGGAATCCCTGGTCTACCAATGTGCCCTATGCCACTTT < 41bp 0.749888527743878 0.546306641691287 0.26640922 0.06713012 prediction 0.407163772105182 Functional Loss - TPRG1L ENSG00000158109 CDS Human protein_coding chr1:3544145 chr1:3544148 synonymous SNV . 0 24 hm5C_associated_SNPs_95626 0 0 0 0 2 TPRG1L chr1:3544064 3'AG 3544064 Downstream 85bp
chr1 3544148 3544148 1 + C T COAD 3544145 + 3544125 3544165 41 AGATGGAATCCCTGGTCTACCAACGTGCCCTATGCCACTTT AGATGGAATCCCTGGTCTACCAATGTGCCCTATGCCACTTT < 41bp 0.749888527743878 0.546306641691287 0.26640922 0.06713012 prediction 0.407163772105182 Functional Loss - TPRG1L ENSG00000158109 CDS Human protein_coding chr1:3544145 chr1:3544148 synonymous SNV . 0 24 hm5C_associated_SNPs_95626 0 0 0 0 2 TPRG1L chr1:3544217 5'GT 3544217 Upstream 70bp
chr19 3533395 3533395 1 + T C UCEC 3533394 + 3533374 3533414 41 ACTCCTACCGCGTGCTGTACCTGGTGAGTTCACGCCAGGCA ACTCCTACCGCGTGCTGTACCCGGTGAGTTCACGCCAGGCA < 41bp 0.819435356735991 0.615861351898751 0.36837763 0.29379666 prediction 0.40714800967448 Functional Loss - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3533394 chr19:3533395 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_95631 0 0 1 0 1 FZR1 chr19:3533396 5'GT 3533396 Upstream 2bp
chr18 9475161 9475161 1 + A C rs72936464 9475160 + 9475140 9475180 41 TGCCCGCGAGCCACCTTCGCCAGCACCACACCGGGGTAAGC TGCCCGCGAGCCACCTTCGCCCGCACCACACCGGGGTAAGC < 41bp 0.723667108583863 0.520093535166123 0.6193895 0.18159544 prediction 0.407147146835481 Functional Loss - RALBP1 ENSG00000017797 UTR5 Human protein_coding chr18:9475160 chr18:9475161 . . 0 22 hm5C_associated_SNPs_95633 0 0 0 0 1 RALBP1 chr18:9475174 5'GT 9475174 Upstream 14bp
chr10 13652107 13652107 1 + C T UCEC 13652104 + 13652084 13652124 41 CAGTACCTCAATGAAATCGTCGGCGGTCAGGAGCCTGGAGA CAGTACCTCAATGAAATCGTCGGTGGTCAGGAGCCTGGAGA < 41bp 0.703573189247027 0.484344173561398 0.86782897 0.42460704 prediction 0.407146378494055 Functional Loss - PRPF18 ENSG00000165630;ENSG00000239665 CDS Human protein_coding chr10:13652104 chr10:13652107 synonymous SNV . 0 24 hm5C_associated_SNPs_95634 0 0 1 0 2 PRPF18 chr10:13652039 3'AG 13652039 Downstream 69bp
chr10 13652107 13652107 1 + C T UCEC 13652104 + 13652084 13652124 41 CAGTACCTCAATGAAATCGTCGGCGGTCAGGAGCCTGGAGA CAGTACCTCAATGAAATCGTCGGTGGTCAGGAGCCTGGAGA < 41bp 0.703573189247027 0.484344173561398 0.86782897 0.42460704 prediction 0.407146378494055 Functional Loss - PRPF18 ENSG00000165630;ENSG00000239665 CDS Human other chr10:13652104 chr10:13652107 synonymous SNV . 0 24 hm5C_associated_SNPs_95634 0 0 1 0 2 PRPF18 chr10:13652185 5'GT 13652185 Upstream 79bp
chrX 134988659 134988659 1 + C T COAD 134988656 + 134988636 134988676 41 TGTTGTTGACTCTTCGACCACGGCGTATTAATATGACAGAC TGTTGTTGACTCTTCGACCACGGTGTATTAATATGACAGAC < 41bp 0.731610129068708 0.528037249081838 0.35709625 0.17710304 prediction 0.407145759973741 Functional Loss - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134988656 chrX:134988659 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_95635 0 0 0 0 2 SAGE1 chrX:134988570 3'AG 134988570 Downstream 90bp
chrX 134988659 134988659 1 + C T COAD 134988656 + 134988636 134988676 41 TGTTGTTGACTCTTCGACCACGGCGTATTAATATGACAGAC TGTTGTTGACTCTTCGACCACGGTGTATTAATATGACAGAC < 41bp 0.731610129068708 0.528037249081838 0.35709625 0.17710304 prediction 0.407145759973741 Functional Loss - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134988656 chrX:134988659 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_95635 0 0 0 0 2 SAGE1 chrX:134988710 5'GT 134988710 Upstream 52bp
chr2 219747052 219747052 1 + G A UCEC 219747049 + 219747029 219747069 41 AGGGCATCCAGATCGCCATCCACGAATGCCAACACCAATTC AGGGCATCCAGATCGCCATCCACAAATGCCAACACCAATTC < 41bp 0.821976962908981 0.618406347218227 0.12121549 0.040864646 prediction 0.407141231381507 Functional Loss - WNT10A ENSG00000135925 CDS Human protein_coding chr2:219747049 chr2:219747052 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_95639 1 0 0 0 1 WNT10A chr2:219747145 5'GT 219747145 Upstream 94bp
chr16 50666288 50666288 1 + G A SKCM 50666285 + 50666265 50666305 41 AACCACTACTTAGATCTCGCCGGGATAGAAAACTACACGTC AACCACTACTTAGATCTCGCCGGAATAGAAAACTACACGTC < 41bp 0.703570017994306 0.458786466871371 0.77802956 0.43923405 prediction 0.407140035988611 Functional Loss - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50666285 chr16:50666288 synonymous SNV . 0 24 hm5C_associated_SNPs_95642 0 0 0 0 2 NKD1 chr16:50666192 3'AG 50666192 Downstream 97bp
chr16 50666288 50666288 1 + G A SKCM 50666285 + 50666265 50666305 41 AACCACTACTTAGATCTCGCCGGGATAGAAAACTACACGTC AACCACTACTTAGATCTCGCCGGAATAGAAAACTACACGTC < 41bp 0.703570017994306 0.458786466871371 0.77802956 0.43923405 prediction 0.407140035988611 Functional Loss - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50666285 chr16:50666288 synonymous SNV . 0 24 hm5C_associated_SNPs_95642 0 0 0 0 2 NKD1 chr16:50666319 5'GT 50666319 Upstream 32bp
chr17 79080553 79080553 1 + A T THYM 79080549 + 79080529 79080569 41 GTCCCTGTCCCTACAGCCTGCAGCAAGGGAAGAGCAGCAGC GTCCCTGTCCCTACAGCCTGCAGCTAGGGAAGAGCAGCAGC < 41bp 0.703569744959613 0.387845966314066 0.21646234 0.16514534 prediction 0.407139489919226 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080549 chr17:79080553 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_95643 0 0 0 0 1 BAIAP2 chr17:79080545 3'AG 79080545 Downstream 9bp
chr20 45355616 45355616 1 + G A GBM 45355613 + 45355593 45355633 41 TCTTCATCAGCCTCTCCTTCCTCGATCTCATTGGTGAGTCC TCTTCATCAGCCTCTCCTTCCTCAATCTCATTGGTGAGTCC < 41bp 0.81900945161471 0.615440352169991 0.706805 0.4855345 prediction 0.407138198889438 Functional Loss - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45355613 chr20:45355616 nonsynonymous SNV 0.925 1 24 hm5C_associated_SNPs_95644 1 0 1 0 1 SLC2A10 chr20:45355625 5'GT 45355625 Upstream 10bp
chr1 175048480 175048480 1 + C T SKCM 175048477 + 175048457 175048497 41 TCTCCCTCCCAGATCTAAGCCGCCACTGCAGCGGCCACGGG TCTCCCTCCCAGATCTAAGCCGCTACTGCAGCGGCCACGGG < 41bp 0.703568504472911 0.482444683333157 0.38614258 0.2781186 prediction 0.407137008945822 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175048477 chr1:175048480 nonsynonymous SNV 0.242 1 24 hm5C_associated_SNPs_95645 0 0 0 0 1 TNN chr1:175048469 3'AG 175048469 Downstream 12bp
chr1 155020388 155020388 1 + G T SARC 155020384 + 155020364 155020404 41 TACCGACTCCGGAGGGTCATCGCAGCCTTCTACTTCCCCAA TACCGACTCCGGAGGGTCATCGCATCCTTCTACTTCCCCAA < 41bp 0.735010910542308 0.531443159048561 0.46008468 0.23228309 prediction 0.407135502987494 Functional Loss - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155020384 chr1:155020388 nonsynonymous SNV 0.982 3 25 hm5C_associated_SNPs_95646 0 0 0 0 1 DCST1 chr1:155020405 5'GT 155020405 Upstream 18bp
chr5 7895962 7895962 1 + A C UCEC 7895958 + 7895938 7895978 41 CCCCGTTTATTGGGTTCCTACAACATAGGTATGTTCTTTTT CCCCGTTTATTGGGTTCCTACAACCTAGGTATGTTCTTTTT < 41bp 0.703567412234672 0.286300120904984 0.061187297 0.09950337 prediction 0.407134824469344 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7895958 chr5:7895962 nonsynonymous SNV 0.691 4 25 hm5C_associated_SNPs_95647 0 0 0 0 1 MTRR chr5:7895965 5'GT 7895965 Upstream 4bp
chr11 121008215 121008215 1 + C T UCS 121008212 + 121008192 121008232 41 ACCCTTACCCTGGGCCCCATCTGCGTGGATAGCTGCTCTGA ACCCTTACCCTGGGCCCCATCTGTGTGGATAGCTGCTCTGA < 41bp 0.703565321739375 0.475861117348088 0.43952823 0.3127501 prediction 0.40713064347875 Functional Loss - TECTA ENSG00000109927 CDS Human protein_coding chr11:121008212 chr11:121008215 synonymous SNV . 0 24 hm5C_associated_SNPs_95648 0 0 0 0 1 TECTA chr11:121008130 3'AG 121008130 Downstream 86bp
chr10 114044383 114044383 1 + G T BLCA 114044379 + 114044359 114044399 41 GGGAAGTTCATCAGCTGGCCCTCGGAGGGCTGTGTTACAAT GGGAAGTTCATCAGCTGGCCCTCGTAGGGCTGTGTTACAAT < 41bp 0.718427972206102 0.514862704093862 0.28344992 0.11294916 prediction 0.40713053622448 Functional Loss - TECTB ENSG00000119913 CDS Human protein_coding chr10:114044379 chr10:114044383 nonsynonymous SNV 0.908 4 25 hm5C_associated_SNPs_95649 0 0 0 0 1 TECTB chr10:114044293 3'AG 114044293 Downstream 91bp
chr5 143354 143354 1 + G A COAD 143351 + 143331 143371 41 CAGTCAGGAGCTGCTGCAGTCCGGGGTCGTCACCCTCCCAG CAGTCAGGAGCTGCTGCAGTCCGAGGTCGTCACCCTCCCAG < 41bp 0.703562593223835 0.447046485201912 0.9453949 0.89016175 prediction 0.407125186447669 Functional Loss - PLEKHG4B ENSG00000153404 CDS Human protein_coding chr5:143351 chr5:143354 nonsynonymous SNV 0.030 3 24 hm5C_associated_SNPs_95651 0 0 0 0 1 PLEKHG4B chr5:143371 5'GT 143371 Upstream 18bp
chr1 110031050 110031050 1 + A C UCEC 110031046 + 110031026 110031066 41 GGCAGTGTGGGGTAATAAATCCAGAGACCAAAAAGATCTGT GGCAGTGTGGGGTAATAAATCCAGCGACCAAAAAGATCTGT < 41bp 0.703562158808463 0.315809012392839 0.7299838 0.7674768 prediction 0.407124317616926 Functional Loss - ATXN7L2 ENSG00000162650 CDS Human protein_coding chr1:110031046 chr1:110031050 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_95652 0 0 0 0 2 ATXN7L2 chr1:110031005 3'AG 110031005 Downstream 46bp
chr1 110031050 110031050 1 + A C UCEC 110031046 + 110031026 110031066 41 GGCAGTGTGGGGTAATAAATCCAGAGACCAAAAAGATCTGT GGCAGTGTGGGGTAATAAATCCAGCGACCAAAAAGATCTGT < 41bp 0.703562158808463 0.315809012392839 0.7299838 0.7674768 prediction 0.407124317616926 Functional Loss - ATXN7L2 ENSG00000162650 CDS Human protein_coding chr1:110031046 chr1:110031050 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_95652 0 0 0 0 2 ATXN7L2 chr1:110031087 5'GT 110031087 Upstream 38bp
chr12 48134768 48134768 1 - A G rs80097705 48134769 - 48134749 48134789 41 GCTCTGCTGAGGGGCTGGACCTGGTGAGTGCCAAGGACCTG GCTCTGCTGAGGGGCTGGACCCGGTGAGTGCCAAGGACCTG < 41bp 0.800925512718838 0.597365808734434 0.26159716 0.4044527 prediction 0.407119407968807 Functional Loss - RAPGEF3 ENSG00000079337 CDS Human protein_coding chr12:48134769 chr12:48134768 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_95654 0 0 0 0 2 RAPGEF3 chr12:48134698 5'GT 48134698 Upstream 71bp
chr12 48134768 48134768 1 - A G rs80097705 48134769 - 48134749 48134789 41 GCTCTGCTGAGGGGCTGGACCTGGTGAGTGCCAAGGACCTG GCTCTGCTGAGGGGCTGGACCCGGTGAGTGCCAAGGACCTG < 41bp 0.800925512718838 0.597365808734434 0.26159716 0.4044527 prediction 0.407119407968807 Functional Loss - RAPGEF3 ENSG00000079337 CDS Human protein_coding chr12:48134769 chr12:48134768 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_95654 0 0 0 0 2 RAPGEF3 chr12:48134823 3'AG 48134823 Downstream 56bp
chr18 12009941 12009941 1 + C T UCEC 12009938 + 12009918 12009958 41 GTGTGTGCTCACCCACAGCCCGACGTGGATCATCGACCCCA GTGTGTGCTCACCCACAGCCCGATGTGGATCATCGACCCCA < 41bp 0.741232148256905 0.537674426800451 0.25808164 0.13919032 prediction 0.407115442912909 Functional Loss - IMPA2 ENSG00000141401 CDS Human protein_coding chr18:12009938 chr18:12009941 nonsynonymous SNV 0.687 4 24 hm5C_associated_SNPs_95656 0 0 1 0 2 IMPA2 chr18:12009882 3'AG 12009882 Downstream 60bp
chr18 12009941 12009941 1 + C T UCEC 12009938 + 12009918 12009958 41 GTGTGTGCTCACCCACAGCCCGACGTGGATCATCGACCCCA GTGTGTGCTCACCCACAGCCCGATGTGGATCATCGACCCCA < 41bp 0.741232148256905 0.537674426800451 0.25808164 0.13919032 prediction 0.407115442912909 Functional Loss - IMPA2 ENSG00000141401 CDS Human protein_coding chr18:12009938 chr18:12009941 nonsynonymous SNV 0.687 4 24 hm5C_associated_SNPs_95656 0 0 1 0 2 IMPA2 chr18:12009986 5'GT 12009986 Upstream 46bp
chr12 132636715 132636715 1 + G A UCEC 132636712 + 132636692 132636732 41 TCCATGCCTGAGGTCAGCATCGCGCCACTGCTGGAGCTCAC TCCATGCCTGAGGTCAGCATCGCACCACTGCTGGAGCTCAC < 41bp 0.703556580205737 0.458104197018668 0.46979445 0.3581906 prediction 0.407113160411474 Functional Loss - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132636712 chr12:132636715 synonymous SNV . 0 24 hm5C_associated_SNPs_95657 0 0 0 0 2 NOC4L chr12:132636629 3'AG 132636629 Downstream 87bp
chr12 132636715 132636715 1 + G A UCEC 132636712 + 132636692 132636732 41 TCCATGCCTGAGGTCAGCATCGCGCCACTGCTGGAGCTCAC TCCATGCCTGAGGTCAGCATCGCACCACTGCTGGAGCTCAC < 41bp 0.703556580205737 0.458104197018668 0.46979445 0.3581906 prediction 0.407113160411474 Functional Loss - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132636712 chr12:132636715 synonymous SNV . 0 24 hm5C_associated_SNPs_95657 0 0 0 0 2 NOC4L chr12:132636742 5'GT 132636742 Upstream 28bp
chrX 131202342 131202342 1 + G A GBM 131202339 + 131202319 131202359 41 ATTCAGAAAAGAAAATTCACCGAGACATAAAAGGTATACAA ATTCAGAAAAGAAAATTCACCGAAACATAAAAGGTATACAA < 41bp 0.747584461737068 0.544029816437994 0.38321382 0.078781545 prediction 0.407109290598149 Functional Loss - STK26 ENSG00000134602 CDS Human protein_coding chrX:131202339 chrX:131202342 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_95658 0 0 0 0 2 STK26 chrX:131202243 3'AG 131202243 Downstream 100bp
chrX 131202342 131202342 1 + G A GBM 131202339 + 131202319 131202359 41 ATTCAGAAAAGAAAATTCACCGAGACATAAAAGGTATACAA ATTCAGAAAAGAAAATTCACCGAAACATAAAAGGTATACAA < 41bp 0.747584461737068 0.544029816437994 0.38321382 0.078781545 prediction 0.407109290598149 Functional Loss - STK26 ENSG00000134602 CDS Human protein_coding chrX:131202339 chrX:131202342 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_95658 0 0 0 0 2 STK26 chrX:131202351 5'GT 131202351 Upstream 10bp
chr18 76752081 76752081 1 + G A UCEC 76752078 + 76752058 76752098 41 TCTCTTGGTCTTGCAGCCGCCCCGGGGGAAGGTGCGGAGGA TCTCTTGGTCTTGCAGCCGCCCCAGGGGAAGGTGCGGAGGA < 41bp 0.703553579956231 0.465881796013692 0.5017354 0.3587341 prediction 0.407107159912463 Functional Loss - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76752078 chr18:76752081 synonymous SNV . 0 24 hm5C_associated_SNPs_95660 0 0 0 0 1 SALL3 chr18:76752074 3'AG 76752074 Downstream 8bp
chr19 49437065 49437065 1 + C T UCEC 49437063 + 49437043 49437083 41 AGACGCTGCCTCGCTCTGAGCACCAGGTCTGCCCGCCCTCC AGACGCTGCCTCGCTCTGAGCATCAGGTCTGCCCGCCCTCC < 41bp 0.821544367201156 0.617991680706853 0.16646093 0.16336784 prediction 0.407105372988605 Functional Loss - DHDH ENSG00000104808 CDS Human protein_coding chr19:49437063 chr19:49437065 synonymous SNV . 0 23 hm5C_associated_SNPs_95661 0 0 0 0 1 DHDH chr19:49437068 5'GT 49437068 Upstream 4bp
chr11 73105590 73105590 1 + G T SARC 73105586 + 73105566 73105606 41 GCCACCATCTCCACACCGTGCAGGGCCTGGCCTCGCTCTCT GCCACCATCTCCACACCGTGCAGGTCCTGGCCTCGCTCTCT < 41bp 0.767681376175749 0.564129718915099 0.9208874 0.21573836 prediction 0.4071033145213 Functional Loss - RELT ENSG00000054967 CDS Human protein_coding chr11:73105586 chr11:73105590 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_95663 0 0 0 0 1 RELT chr11:73105522 3'AG 73105522 Downstream 69bp
chr9 82267687 82267687 1 + C T SKCM 82267685 + 82267665 82267705 41 CAATTAAAGATGAGAAGAAGCACCATGACAATGATCACCAA CAATTAAAGATGAGAAGAAGCATCATGACAATGATCACCAA < 41bp 0.703551351169145 0.470430979925367 0.11866459 0.06454307 prediction 0.407102702338291 Functional Loss - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82267685 chr9:82267687 synonymous SNV . 0 23 hm5C_associated_SNPs_95664 0 0 1 0 1 TLE4 chr9:82267709 5'GT 82267709 Upstream 23bp
chr3 58116577 58116577 1 + G A COAD 58116574 + 58116554 58116594 41 GCCCGTGTCCTGCAGTCCTTCACGGTGGACAGCAGCAAGGC GCCCGTGTCCTGCAGTCCTTCACAGTGGACAGCAGCAAGGC < 41bp 0.810376478820504 0.606828010877655 0.6691265 0.27027398 prediction 0.407096935885699 Functional Loss - FLNB ENSG00000136068 CDS Human protein_coding chr3:58116574 chr3:58116577 synonymous SNV . 0 24 hm5C_associated_SNPs_95667 0 0 1 0 1 FLNB chr3:58116635 5'GT 58116635 Upstream 59bp
chr16 56500072 56500072 1 + C T UCEC 56500069 + 56500049 56500089 41 ATTAAACTATTGCAGATGCCCTGCTGTGCCATGATGATGAG ATTAAACTATTGCAGATGCCCTGTTGTGCCATGATGATGAG < 41bp 0.703547827948294 0.479883128937653 0.017129898 0.017368048 prediction 0.407095655896588 Functional Loss - OGFOD1 ENSG00000087263 CDS Human protein_coding chr16:56500069 chr16:56500072 synonymous SNV . 0 24 hm5C_associated_SNPs_95669 0 0 1 0 1 OGFOD1 chr16:56500064 3'AG 56500064 Downstream 9bp
chr1 113657144 113657144 1 + C T HNSC 113657142 + 113657122 113657162 41 AGCTGGAGGGAGTCCTGCCCCTCGTCTCAACTGGACTAAAG AGCTGGAGGGAGTCCTGCCCCTTGTCTCAACTGGACTAAAG < 41bp 0.703545823803292 0.406161859273398 0.041582495 0.06540087 prediction 0.407091647606583 Functional Loss - LRIG2 ENSG00000198799 CDS Human protein_coding chr1:113657142 chr1:113657144 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_95672 0 0 1 0 1 LRIG2 chr1:113657049 3'AG 113657049 Downstream 96bp
chr18 28926072 28926072 1 + G T UCEC 28926069 + 28926049 28926089 41 CAGGAATGCCTGAGATATGTCAAGAATACTCTGGAACATTA CAGGAATGCCTGAGATATGTCAATAATACTCTGGAACATTA < 41bp 0.703541269474037 0.323353839657277 0.25015193 0.13404995 prediction 0.407082538948073 Functional Loss - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28926069 chr18:28926072 stopgain 0.999 0 24 hm5C_associated_SNPs_95678 0 0 0 0 1 DSG1 chr18:28926161 5'GT 28926161 Upstream 90bp
chrX 128888528 128888528 1 + G A UCEC 128888525 + 128888505 128888545 41 AAAGGCACAGTGGATGAGTTCTCGGGGGCAGAGATCGTGGA AAAGGCACAGTGGATGAGTTCTCAGGGGCAGAGATCGTGGA < 41bp 0.830279850402201 0.626740267163104 0.28866842 0.14248997 prediction 0.407079166478194 Functional Loss - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128888525 chrX:128888528 synonymous SNV . 0 24 hm5C_associated_SNPs_95679 0 0 0 0 1 XPNPEP2 chrX:128888448 3'AG 128888448 Downstream 81bp
chr11 14063180 14063180 1 + G A ACC 14063177 + 14063157 14063197 41 GTTTTGGATAGCACCACCAGCGGGAACAGGCTGCGTGATTC GTTTTGGATAGCACCACCAGCGGAAACAGGCTGCGTGATTC < 41bp 0.786665562407564 0.583128419681731 0.8888873 0.86024153 prediction 0.407074285451667 Functional Loss - SPON1 ENSG00000152268 ncRNA_exonic Human other chr11:14063177 chr11:14063180 . 0.984 3 24 hm5C_associated_SNPs_95680 0 0 0 0 1 SPON1 chr11:14063201 5'GT 14063201 Upstream 22bp
chr19 41515193 41515193 1 + C T GBM 41515190 + 41515170 41515210 41 ACAGGCAAGTTTACAAAAACCTGCAGGAAATCAATGCTTAC ACAGGCAAGTTTACAAAAACCTGTAGGAAATCAATGCTTAC < 41bp 0.781953362188957 0.578418384419658 0.20785981 0.25255054 prediction 0.407069955538598 Functional Loss - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41515190 chr19:41515193 stopgain 0.066 0 24 hm5C_associated_SNPs_95681 0 0 0 0 1 CYP2B6 chr19:41515124 3'AG 41515124 Downstream 70bp
chr2 64111152 64111152 1 + C T COAD 64111150 + 64111130 64111170 41 GTTTTAATGAACTCTTTTAACACGGATGAAGATACCAAAAA GTTTTAATGAACTCTTTTAACATGGATGAAGATACCAAAAA < 41bp 0.859808494839214 0.656274712026095 0.3838692 0.41688445 prediction 0.407067565626238 Functional Loss - UGP2 ENSG00000169764 CDS Human protein_coding chr2:64111150 chr2:64111152 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_95683 0 0 1 0 2 UGP2 chr2:64111094 3'AG 64111094 Downstream 59bp
chr2 64111152 64111152 1 + C T COAD 64111150 + 64111130 64111170 41 GTTTTAATGAACTCTTTTAACACGGATGAAGATACCAAAAA GTTTTAATGAACTCTTTTAACATGGATGAAGATACCAAAAA < 41bp 0.859808494839214 0.656274712026095 0.3838692 0.41688445 prediction 0.407067565626238 Functional Loss - UGP2 ENSG00000169764 CDS Human protein_coding chr2:64111150 chr2:64111152 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_95683 0 0 1 0 2 UGP2 chr2:64111227 5'GT 64111227 Upstream 76bp
chr9 847106 847106 1 + G T PAAD 847102 + 847082 847122 41 GACTGAGTGCAGTGGCACCTCTCAGCCACCGCCGGCCAGTG GACTGAGTGCAGTGGCACCTCTCATCCACCGCCGGCCAGTG < 41bp 0.764628367545632 0.561095900293611 0.026885957 0.108876884 prediction 0.407064934504043 Functional Loss - DMRT1 ENSG00000137090 CDS Human protein_coding chr9:847102 chr9:847106 nonsynonymous SNV 0.080 1 25 hm5C_associated_SNPs_95685 0 0 0 0 1 DMRT1 chr9:847143 5'GT 847143 Upstream 38bp
chr6 107361043 107361043 1 + C T UCEC 107361040 + 107361020 107361060 41 GGATTGGACTCTGGGGTGTTCTCCGAGGGACACCTTCATCA GGATTGGACTCTGGGGTGTTCTCTGAGGGACACCTTCATCA < 41bp 0.789237191151936 0.585705797722277 0.32168838 0.3652046 prediction 0.407062786859318 Functional Loss - C6orf203 ENSG00000130349 CDS Human protein_coding chr6:107361040 chr6:107361043 stopgain 0.464 0 24 hm5C_associated_SNPs_95686 0 0 0 0 1 C6orf203 chr6:107360953 3'AG 107360953 Downstream 91bp
chr15 45408398 45408398 1 + C T KIRC 45408396 + 45408376 45408416 41 ACAAAGCCTTCAGCGCAGCGCGCGTTACAGCCCGTGTCCGT ACAAAGCCTTCAGCGCAGCGCGTGTTACAGCCCGTGTCCGT < 41bp 0.703527673677652 0.445411441148188 0.03748858 0.050581545 prediction 0.407055347355304 Functional Loss - DUOXA2 ENSG00000140274 CDS Human protein_coding chr15:45408396 chr15:45408398 synonymous SNV . 0 23 hm5C_associated_SNPs_95690 0 0 0 0 2 DUOXA2 chr15:45408322 3'AG 45408322 Downstream 77bp
chr15 45408398 45408398 1 + C T KIRC 45408396 + 45408376 45408416 41 ACAAAGCCTTCAGCGCAGCGCGCGTTACAGCCCGTGTCCGT ACAAAGCCTTCAGCGCAGCGCGTGTTACAGCCCGTGTCCGT < 41bp 0.703527673677652 0.445411441148188 0.03748858 0.050581545 prediction 0.407055347355304 Functional Loss - DUOXA2 ENSG00000140274 CDS Human protein_coding chr15:45408396 chr15:45408398 synonymous SNV . 0 23 hm5C_associated_SNPs_95690 0 0 0 0 2 DUOXA2 chr15:45408456 5'GT 45408456 Upstream 59bp
chr16 31717029 31717029 1 + C T rs557794640 31717026 + 31717006 31717046 41 AAAGACTTGGAGATGGACCCCACCGACTGCACACCACCCAA AAAGACTTGGAGATGGACCCCACTGACTGCACACCACCCAA < 41bp 0.703997669730185 0.500471760290319 0.045285255 0.056636572 prediction 0.407051818879733 Functional Loss - CLUHP3 ENSG00000131797 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:31717026 chr16:31717029 . . 0 24 hm5C_associated_SNPs_95691 0 0 1 0 2 CLUHP3 chr16:31716993 3'AG 31716993 Downstream 37bp
chr16 31717029 31717029 1 + C T rs557794640 31717026 + 31717006 31717046 41 AAAGACTTGGAGATGGACCCCACCGACTGCACACCACCCAA AAAGACTTGGAGATGGACCCCACTGACTGCACACCACCCAA < 41bp 0.703997669730185 0.500471760290319 0.045285255 0.056636572 prediction 0.407051818879733 Functional Loss - CLUHP3 ENSG00000131797 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:31717026 chr16:31717029 . . 0 24 hm5C_associated_SNPs_95691 0 0 1 0 2 CLUHP3 chr16:31717113 5'GT 31717113 Upstream 85bp
chr7 142045538 142045538 1 + A T STAD 142045534 + 142045514 142045554 41 CCCCGCAGTCCCCATGGAAACGGGAGTTACGCAGACACCAA CCCCGCAGTCCCCATGGAAACGGGTGTTACGCAGACACCAA < 41bp 0.84894694127393 0.645424468575199 0.8937813 0.8826098 prediction 0.407044945397461 Functional Loss - TRY2P;MTRNR2L6 ENSG00000211745 CDS Human TR_V_gene chr7:142045534 chr7:142045538 synonymous SNV . 0 25 hm5C_associated_SNPs_95694 0 0 0 0 1 TRY2P;MTRNR2L6 chr7:142045522 3'AG 142045522 Downstream 17bp
chr17 4643866 4643866 1 + G T THCA 4643864 + 4643844 4643884 41 ATGGAGTTTGTGTCTGGATACCGGGATGAGTTCCTTGATTT ATGGAGTTTGTGTCTGGATACCTGGATGAGTTCCTTGATTT < 41bp 0.703521272129447 0.344751221643474 0.88197935 0.18557817 prediction 0.407042544258895 Functional Loss - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4643864 chr17:4643866 nonsynonymous SNV 0.968 1 23 hm5C_associated_SNPs_95698 0 0 0 0 1 ZMYND15 chr17:4643814 3'AG 4643814 Downstream 53bp
chr1 161088995 161088995 1 + C T UCEC 161088992 + 161088972 161089012 41 GGCTGTGTGCCAGGTAACATCGACGCCAGACAAGCAACAGA GGCTGTGTGCCAGGTAACATCGATGCCAGACAAGCAACAGA < 41bp 0.783605992055484 0.580086005914451 0.50468147 0.26956496 prediction 0.407039972282065 Functional Loss - NIT1 ENSG00000158793 CDS Human protein_coding chr1:161088992 chr1:161088995 nonsynonymous SNV 0.972 5 24 hm5C_associated_SNPs_95699 0 0 1 0 1 NIT1 chr1:161088924 3'AG 161088924 Downstream 72bp
chr2 131904296 131904296 1 + G A UCEC 131904293 + 131904273 131904313 41 GCGACCTGGCACTGGGCATGCTGGCAGGAGCAGCCACGGGC GCGACCTGGCACTGGGCATGCTGACAGGAGCAGCCACGGGC < 41bp 0.703517517543654 0.485103643734677 0.05830866 0.0499281 prediction 0.407035035087308 Functional Loss - PLEKHB2 ENSG00000115762 CDS Human protein_coding chr2:131904293 chr2:131904296 stopgain 0.994 3 24 hm5C_associated_SNPs_95701 0 0 1 0 1 PLEKHB2 chr2:131904210 3'AG 131904210 Downstream 87bp
chr9 130473028 130473028 1 + G T COAD 130473025 + 130473005 130473045 41 GAGAAGAAGTCGGTGCTGGACAAGGACAGGTGGGCAAGCGG GAGAAGAAGTCGGTGCTGGACAATGACAGGTGGGCAAGCGG < 41bp 0.703515339611121 0.309711756049761 0.21132535 0.08554605 prediction 0.407030679222242 Functional Loss - CFAP157 ENSG00000160401 CDS Human protein_coding chr9:130473025 chr9:130473028 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_95702 0 0 0 0 1 CFAP157 chr9:130473033 5'GT 130473033 Upstream 6bp
chr19 19334892 19334892 1 + G A SKCM 19334889 + 19334869 19334909 41 CACTGACCTTCGCTGAGGCCCAGGAGGCCTGCCGTCTCAGC CACTGACCTTCGCTGAGGCCCAGAAGGCCTGCCGTCTCAGC < 41bp 0.83569318268937 0.63217935577401 0.90945816 0.46900356 prediction 0.407027653830719 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19334889 chr19:19334892 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_95703 0 0 0 0 1 NCAN chr19:19334830 3'AG 19334830 Downstream 63bp
chr21 43504273 43504273 1 + C T COAD 43504270 + 43504250 43504290 41 CCTGAACCATCCACCTCCCCCTGCAGCTTGGACATCGACTG CCTGAACCATCCACCTCCCCCTGTAGCTTGGACATCGACTG < 41bp 0.761753050499799 0.558241224772198 0.10778862 0.09284523 prediction 0.407023651455203 Functional Loss - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43504270 chr21:43504273 synonymous SNV . 0 24 hm5C_associated_SNPs_95705 0 0 0 0 2 UMODL1 chr21:43504194 3'AG 43504194 Downstream 80bp
chr21 43504273 43504273 1 + C T COAD 43504270 + 43504250 43504290 41 CCTGAACCATCCACCTCCCCCTGCAGCTTGGACATCGACTG CCTGAACCATCCACCTCCCCCTGTAGCTTGGACATCGACTG < 41bp 0.761753050499799 0.558241224772198 0.10778862 0.09284523 prediction 0.407023651455203 Functional Loss - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43504270 chr21:43504273 synonymous SNV . 0 24 hm5C_associated_SNPs_95705 0 0 0 0 2 UMODL1 chr21:43504355 5'GT 43504355 Upstream 83bp
chr2 173855595 173855595 1 + G A SKCM 173855592 + 173855572 173855612 41 ATGACCAAGATGTCTTGGTGCTGGAGAAGGTCCCAGCAGGG ATGACCAAGATGTCTTGGTGCTGAAGAAGGTCCCAGCAGGG < 41bp 0.775607541432231 0.572098815420303 0.8503914 0.43017563 prediction 0.407017452023855 Functional Loss - RAPGEF4 ENSG00000091428 CDS Human protein_coding chr2:173855592 chr2:173855595 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_95708 0 0 1 0 2 RAPGEF4 chr2:173855538 3'AG 173855538 Downstream 58bp
chr2 173855595 173855595 1 + G A SKCM 173855592 + 173855572 173855612 41 ATGACCAAGATGTCTTGGTGCTGGAGAAGGTCCCAGCAGGG ATGACCAAGATGTCTTGGTGCTGAAGAAGGTCCCAGCAGGG < 41bp 0.775607541432231 0.572098815420303 0.8503914 0.43017563 prediction 0.407017452023855 Functional Loss - RAPGEF4 ENSG00000091428 CDS Human protein_coding chr2:173855592 chr2:173855595 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_95708 0 0 1 0 2 RAPGEF4 chr2:173855653 5'GT 173855653 Upstream 59bp
chr4 5798801 5798801 1 + C T COAD 5798798 + 5798778 5798818 41 ACCTGCTGTTGCGCTCAGCCCTCCGGAGGCTGGCACTCCGC ACCTGCTGTTGCGCTCAGCCCTCTGGAGGCTGGCACTCCGC < 41bp 0.703507364237381 0.484693077771292 0.8928949 0.5772968 prediction 0.407014728474761 Functional Loss - EVC ENSG00000072840 CDS Human protein_coding chr4:5798798 chr4:5798801 nonsynonymous SNV 0.303 4 24 hm5C_associated_SNPs_95711 0 0 0 0 1 EVC chr4:5798749 3'AG 5798749 Downstream 53bp
chr19 55175721 55175721 1 + G A GBM 55175718 + 55175698 55175738 41 CGTGACCCTGCTGTGTCAGTCACGGAGCCCAATGGACACTT CGTGACCCTGCTGTGTCAGTCACAGAGCCCAATGGACACTT < 41bp 0.832299059203153 0.628791927697458 0.6732194 0.31411994 prediction 0.40701426301139 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55175718 chr19:55175721 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_95713 0 0 0 0 1 LILRB4 chr19:55175637 3'AG 55175637 Downstream 85bp
chr10 43609956 43609956 1 + G A BRCA 43609953 + 43609933 43609973 41 CTGTGCGACGAGCTGTGCCGCACGGTGATCGCAGCCGCTGT CTGTGCGACGAGCTGTGCCGCACAGTGATCGCAGCCGCTGT < 41bp 0.703503822603517 0.449129424903501 0.0909158 0.05562046 prediction 0.407007645207034 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43609953 chr10:43609956 synonymous SNV . 0 24 hm5C_associated_SNPs_95715 1 0 0 0 1 RET chr10:43609928 3'AG 43609928 Downstream 29bp
chr10 43609955 43609955 1 + C T OV 43609953 + 43609933 43609973 41 CTGTGCGACGAGCTGTGCCGCACGGTGATCGCAGCCGCTGT CTGTGCGACGAGCTGTGCCGCATGGTGATCGCAGCCGCTGT < 41bp 0.703503822603517 0.44305815528703 0.0909158 0.05141923 prediction 0.407007645207034 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43609953 chr10:43609955 nonsynonymous SNV 0.628 1 23 hm5C_associated_SNPs_95716 1 0 0 0 1 RET chr10:43609928 3'AG 43609928 Downstream 28bp
chr17 15643492 15643492 1 + G A SKCM 15643489 + 15643469 15643509 41 ATTCCCGGGCAGCGATATTCCTGGGACATGTGCCCATATTC ATTCCCGGGCAGCGATATTCCTGAGACATGTGCCCATATTC < 41bp 0.822354943640374 0.618851640932746 0.36807436 0.23169827 prediction 0.407006605415254 Functional Loss - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15643489 chr17:15643492 stopgain 0.004 0 24 hm5C_associated_SNPs_95717 0 0 0 0 1 TBC1D26 chr17:15643414 3'AG 15643414 Downstream 79bp
chr7 130007280 130007280 1 + G T UCEC 130007276 + 130007256 130007296 41 GCCCTCCCCTCAGTCGGAGCCGGAGGTGGCTGCCATAGTGA GCCCTCCCCTCAGTCGGAGCCGGATGTGGCTGCCATAGTGA < 41bp 0.748380694171361 0.544877513897686 0.91951144 0.8446504 prediction 0.407006360547349 Functional Loss - CPA5 ENSG00000158525 CDS Human protein_coding chr7:130007276 chr7:130007280 nonsynonymous SNV 0.443 4 25 hm5C_associated_SNPs_95718 0 0 0 0 1 CPA5 chr7:130007213 3'AG 130007213 Downstream 68bp
chr2 220146703 220146703 1 + G A UCEC 220146700 + 220146680 220146720 41 AGAAGCTGGCAGTGGTGGGCCTGGCTTCACCTTCACCTTCC AGAAGCTGGCAGTGGTGGGCCTGACTTCACCTTCACCTTCC < 41bp 0.70350230180352 0.44339467151381 0.50567365 0.047791958 prediction 0.40700460360704 Functional Loss - DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220146700 chr2:220146703 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_95720 0 0 0 0 2 DNAJB2 chr2:220146661 3'AG 220146661 Downstream 43bp
chr2 220146703 220146703 1 + G A UCEC 220146700 + 220146680 220146720 41 AGAAGCTGGCAGTGGTGGGCCTGGCTTCACCTTCACCTTCC AGAAGCTGGCAGTGGTGGGCCTGACTTCACCTTCACCTTCC < 41bp 0.70350230180352 0.44339467151381 0.50567365 0.047791958 prediction 0.40700460360704 Functional Loss - DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220146700 chr2:220146703 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_95720 0 0 0 0 2 DNAJB2 chr2:220146783 5'GT 220146783 Upstream 81bp
chr7 66660264 66660264 1 + C T SKCM 66660262 + 66660242 66660282 41 ACGAGTTGGTGGATCTGATCCCCGAATATGAAATTGCATGT ACGAGTTGGTGGATCTGATCCCTGAATATGAAATTGCATGT < 41bp 0.703500885453014 0.398453826269967 0.046325356 0.050205827 prediction 0.407001770906029 Functional Loss - TYW1 ENSG00000198874 CDS Human protein_coding chr7:66660262 chr7:66660264 synonymous SNV . 0 23 hm5C_associated_SNPs_95721 0 0 0 0 1 TYW1 chr7:66660324 5'GT 66660324 Upstream 61bp
chr7 66660265 66660265 1 + G A UCEC 66660262 + 66660242 66660282 41 ACGAGTTGGTGGATCTGATCCCCGAATATGAAATTGCATGT ACGAGTTGGTGGATCTGATCCCCAAATATGAAATTGCATGT < 41bp 0.703500885453014 0.464556546383135 0.046325356 0.119157314 prediction 0.407001770906029 Functional Loss - TYW1 ENSG00000198874 CDS Human protein_coding chr7:66660262 chr7:66660265 nonsynonymous SNV 0.020 0 24 hm5C_associated_SNPs_95722 0 0 0 0 1 TYW1 chr7:66660324 5'GT 66660324 Upstream 60bp
chr7 99707825 99707825 1 - C T SKCM 99707828 - 99707808 99707848 41 CAGGCTTGGCTGAGCTGGGACACGATGTTAGGCCTCTGGGA CAGGCTTGGCTGAGCTGGGACACAATGTTAGGCCTCTGGGA < 41bp 0.703500634459449 0.442940262119458 0.5837198 0.70399266 prediction 0.407001268918897 Functional Loss - TAF6 ENSG00000106290;ENSG00000221838 CDS Human other chr7:99707828 chr7:99707825 nonsynonymous SNV 0.643 3 24 hm5C_associated_SNPs_95723 0 0 1 0 2 TAF6 chr7:99707823 5'GT 99707823 Upstream 3bp
chr7 99707825 99707825 1 - C T SKCM 99707828 - 99707808 99707848 41 CAGGCTTGGCTGAGCTGGGACACGATGTTAGGCCTCTGGGA CAGGCTTGGCTGAGCTGGGACACAATGTTAGGCCTCTGGGA < 41bp 0.703500634459449 0.442940262119458 0.5837198 0.70399266 prediction 0.407001268918897 Functional Loss - TAF6 ENSG00000106290;ENSG00000221838 CDS Human other chr7:99707828 chr7:99707825 nonsynonymous SNV 0.643 3 24 hm5C_associated_SNPs_95723 0 0 1 0 2 TAF6 chr7:99707897 3'AG 99707897 Downstream 73bp
chr20 45801458 45801458 1 + G A PAAD 45801455 + 45801435 45801475 41 GCGTGGACTGGATGAGGAAGCTGGCCTTCCGCTACCGGCGG GCGTGGACTGGATGAGGAAGCTGACCTTCCGCTACCGGCGG < 41bp 0.703500209395098 0.450370958259615 0.4244135 0.41617787 prediction 0.407000418790197 Functional Loss - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45801455 chr20:45801458 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_95724 0 0 1 0 1 EYA2 chr20:45801515 5'GT 45801515 Upstream 58bp
chr21 43533714 43533714 1 + C T SKCM 43533711 + 43533691 43533731 41 TCCATTGGGAGGATCATGGTCTCCAATGTGACCAGCACCGG TCCATTGGGAGGATCATGGTCTCTAATGTGACCAGCACCGG < 41bp 0.70349609161894 0.472447286677581 0.96482736 0.9452589 prediction 0.40699218323788 Functional Loss - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43533711 chr21:43533714 synonymous SNV . 0 24 hm5C_associated_SNPs_95728 0 0 0 0 1 UMODL1 chr21:43533683 3'AG 43533683 Downstream 32bp
chr2 108622658 108622658 1 + G T LUAD 108622656 + 108622636 108622676 41 TGGGGCCATTGGAGCATCAACAGGTAAATCTCTTGCAGCTT TGGGGCCATTGGAGCATCAACATGTAAATCTCTTGCAGCTT < 41bp 0.70349397430788 0.351030771141188 0.91344595 0.47145247 prediction 0.40698794861576 Functional Loss - SLC5A7 ENSG00000115665 CDS Human protein_coding chr2:108622656 chr2:108622658 nonsynonymous SNV 0.981 5 23 hm5C_associated_SNPs_95730 0 0 0 0 1 SLC5A7 chr2:108622658 5'GT 108622658 Upstream 1bp
chr7 5340083 5340083 1 + G A LUAD 5340080 + 5340060 5340100 41 CAGCCCTGCCCGTGGACTGGCGGGGCACCCACCTGCTGGCC CAGCCCTGCCCGTGGACTGGCGGAGCACCCACCTGCTGGCC < 41bp 0.837807575581679 0.634317095400078 0.9432465 0.9204192 prediction 0.406980960363201 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5340080 chr7:5340083 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_95732 0 0 0 0 1 SLC29A4 chr7:5340053 3'AG 5340053 Downstream 31bp
chr1 200860824 200860824 1 + G T UCEC 200860820 + 200860800 200860840 41 GGCGGGCGGCGCCAGAGCTCCATGGGACAGGTAAGCGGGAA GGCGGGCGGCGCCAGAGCTCCATGTGACAGGTAAGCGGGAA < 41bp 0.717356894418807 0.513870896923093 0.8835598 0.8601979 prediction 0.406971994991428 Functional Loss - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200860820 chr1:200860824 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_95734 0 0 0 0 1 C1orf106 chr1:200860829 5'GT 200860829 Upstream 6bp
chr22 39382414 39382414 1 + T C rs146055882 39382413 + 39382393 39382433 41 ACCGCACGCTAAAGGAGATTCTCAGGTGAGGGTCTCCCTCT ACCGCACGCTAAAGGAGATTCCCAGGTGAGGGTCTCCCTCT < 41bp 0.703481993917621 0.458253124174197 0.12269896 0.19036835 prediction 0.406963987835242 Functional Loss - APOBEC3B ENSG00000179750 CDS Human protein_coding chr22:39382413 chr22:39382414 nonsynonymous SNV 0.018 1 22 hm5C_associated_SNPs_95736 0 0 0 0 1 APOBEC3B chr22:39382417 5'GT 39382417 Upstream 4bp
chr1 161069895 161069895 1 + G A LAML 161069892 + 161069872 161069912 41 TCCACTTCCCCTGTGCAGATCGTGGGATGAAACGCATGGGC TCCACTTCCCCTGTGCAGATCGTAGGATGAAACGCATGGGC < 41bp 0.703478038260057 0.449929514657991 0.73825157 0.47604182 prediction 0.406956076520114 Functional Loss - KLHDC9 ENSG00000162755 CDS Human protein_coding chr1:161069892 chr1:161069895 nonsynonymous SNV 0.849 0 24 hm5C_associated_SNPs_95737 0 0 0 0 1 KLHDC9 chr1:161069851 3'AG 161069851 Downstream 45bp
chr10 71697406 71697406 1 + G A ESCA 71697403 + 71697383 71697423 41 TCCTCCAGGGGGAAGCAGGACTAGATGGAGCAAAAGGAGAG TCCTCCAGGGGGAAGCAGGACTAAATGGAGCAAAAGGAGAG < 41bp 0.75428776110653 0.550811927310535 0.27247316 0.26212353 prediction 0.40695166759199 Functional Loss - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71697403 chr10:71697406 nonsynonymous SNV 0.847 2 24 hm5C_associated_SNPs_95739 0 0 0 0 2 COL13A1 chr10:71697391 3'AG 71697391 Downstream 16bp
chr10 71697406 71697406 1 + G A ESCA 71697403 + 71697383 71697423 41 TCCTCCAGGGGGAAGCAGGACTAGATGGAGCAAAAGGAGAG TCCTCCAGGGGGAAGCAGGACTAAATGGAGCAAAAGGAGAG < 41bp 0.75428776110653 0.550811927310535 0.27247316 0.26212353 prediction 0.40695166759199 Functional Loss - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71697403 chr10:71697406 nonsynonymous SNV 0.847 2 24 hm5C_associated_SNPs_95739 0 0 0 0 2 COL13A1 chr10:71697471 5'GT 71697471 Upstream 66bp
chr11 64803082 64803082 1 + G A rs141762341 64803079 + 64803059 64803099 41 GGAGGCATCTGGTTCCCCTGCCCGAGGCCCCCTCACCGAGG GGAGGCATCTGGTTCCCCTGCCCAAGGCCCCCTCACCGAGG < 41bp 0.848774323479585 0.645299383474836 0.18183866 0.1018596 prediction 0.406949880009499 Functional Loss - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64803079 chr11:64803082 nonsynonymous SNV 0.099 0 24 hm5C_associated_SNPs_95742 0 0 0 0 2 SNX15 chr11:64802992 3'AG 64802992 Downstream 91bp
chr11 64803082 64803082 1 + G A rs141762341 64803079 + 64803059 64803099 41 GGAGGCATCTGGTTCCCCTGCCCGAGGCCCCCTCACCGAGG GGAGGCATCTGGTTCCCCTGCCCAAGGCCCCCTCACCGAGG < 41bp 0.848774323479585 0.645299383474836 0.18183866 0.1018596 prediction 0.406949880009499 Functional Loss - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64803079 chr11:64803082 nonsynonymous SNV 0.099 0 24 hm5C_associated_SNPs_95742 0 0 0 0 2 SNX15 chr11:64803135 5'GT 64803135 Upstream 54bp
chr5 71482516 71482516 1 + G T COAD 71482512 + 71482492 71482532 41 GGGCAGTGCTTTGAAAATACCGGAGAGCTCATTCTCCAGTC GGGCAGTGCTTTGAAAATACCGGATAGCTCATTCTCCAGTC < 41bp 0.725049302253432 0.521574480707916 0.7773584 0.27299896 prediction 0.406949643091033 Functional Loss - MAP1B ENSG00000131711 CDS Human protein_coding chr5:71482512 chr5:71482516 stopgain 0.980 1 25 hm5C_associated_SNPs_95743 0 0 1 0 2 MAP1B chr5:71482441 3'AG 71482441 Downstream 76bp
chr5 71482516 71482516 1 + G T COAD 71482512 + 71482492 71482532 41 GGGCAGTGCTTTGAAAATACCGGAGAGCTCATTCTCCAGTC GGGCAGTGCTTTGAAAATACCGGATAGCTCATTCTCCAGTC < 41bp 0.725049302253432 0.521574480707916 0.7773584 0.27299896 prediction 0.406949643091033 Functional Loss - MAP1B ENSG00000131711 CDS Human protein_coding chr5:71482512 chr5:71482516 stopgain 0.980 1 25 hm5C_associated_SNPs_95743 0 0 1 0 2 MAP1B chr5:71482581 5'GT 71482581 Upstream 66bp
chr1 15888817 15888817 1 + A C GBM 15888816 + 15888796 15888836 41 TGAGGCGTTTCAAGGGAAATCAGCGGTAAGCCACAGAGTCT TGAGGCGTTTCAAGGGAAATCCGCGGTAAGCCACAGAGTCT < 41bp 0.703474074056252 0.434543612403221 0.8853878 0.843944 prediction 0.406948148112503 Functional Loss - DNAJC16 ENSG00000116138 CDS Human protein_coding chr1:15888816 chr1:15888817 synonymous SNV . 0 22 hm5C_associated_SNPs_95745 0 0 0 1 1 DNAJC16 chr1:15888820 5'GT 15888820 Upstream 4bp
chr1 15888819 15888819 1 + C T UCEC 15888816 + 15888796 15888836 41 TGAGGCGTTTCAAGGGAAATCAGCGGTAAGCCACAGAGTCT TGAGGCGTTTCAAGGGAAATCAGTGGTAAGCCACAGAGTCT < 41bp 0.703474074056252 0.491368407775319 0.8853878 0.7889494 prediction 0.406948148112503 Functional Loss - DNAJC16 ENSG00000116138 CDS Human protein_coding chr1:15888816 chr1:15888819 nonsynonymous SNV 0.103 0 24 hm5C_associated_SNPs_95746 0 0 0 1 1 DNAJC16 chr1:15888820 5'GT 15888820 Upstream 2bp
chr17 21826174 21826174 1 + G A rs199666173 21826171 + 21826151 21826191 41 CTGCAGGAGAGGAGCAGGCCCACGTCCAAGAAGATGGCTGT CTGCAGGAGAGGAGCAGGCCCACATCCAAGAAGATGGCTGT < 41bp 0.70347308342659 0.482440210855852 0.28994173 0.41313744 prediction 0.406946166853181 Functional Loss - FAM27E5 ENSG00000178130 ncRNA_exonic Human lincRNA chr17:21826171 chr17:21826174 . . 0 24 hm5C_associated_SNPs_95749 0 0 0 0 1 FAM27E5 chr17:21826096 3'AG 21826096 Downstream 79bp
chr17 32597347 32597347 1 + C T UCEC 32597345 + 32597325 32597365 41 GCACTTCTGTGTCTGCTGCTCACAGCAGCTGCTTTCAGCCC GCACTTCTGTGTCTGCTGCTCATAGCAGCTGCTTTCAGCCC < 41bp 0.808300086295223 0.604827730678519 0.15570027 0.16258404 prediction 0.406944711233408 Functional Loss - CCL7 ENSG00000108688 CDS Human protein_coding chr17:32597345 chr17:32597347 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_95750 0 0 0 0 1 CCL7 chr17:32597385 5'GT 32597385 Upstream 39bp
chr9 131475921 131475921 1 + G T UCEC 131475919 + 131475899 131475939 41 CGCAGGGACTGCTTTTTGCCCAGGTGCTCACCACCTCCGCC CGCAGGGACTGCTTTTTGCCCATGTGCTCACCACCTCCGCC < 41bp 0.703472268805553 0.352083795095684 0.91869915 0.18603086 prediction 0.406944537611105 Functional Loss - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131475919 chr9:131475921 nonsynonymous SNV 0.957 1 23 hm5C_associated_SNPs_95751 0 0 1 0 1 PKN3 chr9:131475921 5'GT 131475921 Upstream 1bp
chrX 13641992 13641992 1 + G T LUAD 13641989 + 13641969 13642009 41 TTCAATCATGGGATCTGTGACTGGAAACAGGATAGAGAAGA TTCAATCATGGGATCTGTGACTGTAAACAGGATAGAGAAGA < 41bp 0.703470560477801 0.362010303601282 0.18390685 0.054436386 prediction 0.406941120955602 Functional Loss - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13641989 chrX:13641992 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_95753 0 0 0 0 3 EGFL6 chrX:13641940 3'AG 13641940 Downstream 53bp
chrX 13641992 13641992 1 + G T LUAD 13641989 + 13641969 13642009 41 TTCAATCATGGGATCTGTGACTGGAAACAGGATAGAGAAGA TTCAATCATGGGATCTGTGACTGTAAACAGGATAGAGAAGA < 41bp 0.703470560477801 0.362010303601282 0.18390685 0.054436386 prediction 0.406941120955602 Functional Loss - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13641989 chrX:13641992 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_95753 0 0 0 0 3 EGFL6 chrX:13641943 3'AG 13641943 Downstream 50bp
chrX 13641992 13641992 1 + G T LUAD 13641989 + 13641969 13642009 41 TTCAATCATGGGATCTGTGACTGGAAACAGGATAGAGAAGA TTCAATCATGGGATCTGTGACTGTAAACAGGATAGAGAAGA < 41bp 0.703470560477801 0.362010303601282 0.18390685 0.054436386 prediction 0.406941120955602 Functional Loss - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13641989 chrX:13641992 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_95753 0 0 0 0 3 EGFL6 chrX:13642044 5'GT 13642044 Upstream 53bp
chr17 51063875 51063875 1 + G T LIHC 51063871 + 51063851 51063891 41 ATGAATCTCCTGTGAATCAGCTGGGAAACATGCAGAGTAAT ATGAATCTCCTGTGAATCAGCTGGTAAACATGCAGAGTAAT < 41bp 0.711698617744676 0.508234809153403 0.45027822 0.31599635 prediction 0.406927617182545 Functional Loss - C17orf112 ENSG00000227011 CDS Human lincRNA chr17:51063871 chr17:51063875 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_95756 0 0 0 0 1 C17orf112 chr17:51063800 3'AG 51063800 Downstream 76bp
chr2 10918751 10918751 1 + G T PAAD 10918748 + 10918728 10918768 41 TTCAGTGAAGCCTTCATTGCCTGGATCCACATCAAGGCCCT TTCAGTGAAGCCTTCATTGCCTGTATCCACATCAAGGCCCT < 41bp 0.935806909029643 0.732344192679367 0.2865266 0.05276686 prediction 0.40692543270055 Functional Loss - ATP6V1C2 ENSG00000143882 CDS Human protein_coding chr2:10918748 chr2:10918751 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_95758 0 0 0 0 2 ATP6V1C2 chr2:10918698 3'AG 10918698 Downstream 54bp
chr2 10918751 10918751 1 + G T PAAD 10918748 + 10918728 10918768 41 TTCAGTGAAGCCTTCATTGCCTGGATCCACATCAAGGCCCT TTCAGTGAAGCCTTCATTGCCTGTATCCACATCAAGGCCCT < 41bp 0.935806909029643 0.732344192679367 0.2865266 0.05276686 prediction 0.40692543270055 Functional Loss - ATP6V1C2 ENSG00000143882 CDS Human protein_coding chr2:10918748 chr2:10918751 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_95758 0 0 0 0 2 ATP6V1C2 chr2:10918795 5'GT 10918795 Upstream 45bp
chr12 27625778 27625778 1 + C T UCEC 27625775 + 27625755 27625795 41 GATGATGAGGATGACATTTCCTCCGAAAACCCTCAAACTGA GATGATGAGGATGACATTTCCTCTGAAAACCCTCAAACTGA < 41bp 0.765149014830232 0.561686430087873 0.08718687 0.115321666 prediction 0.406925169484719 Functional Loss - SMCO2 ENSG00000165935 CDS Human protein_coding chr12:27625775 chr12:27625778 synonymous SNV . 0 24 hm5C_associated_SNPs_95759 0 0 0 0 2 SMCO2 chr12:27625709 3'AG 27625709 Downstream 70bp
chr12 27625778 27625778 1 + C T UCEC 27625775 + 27625755 27625795 41 GATGATGAGGATGACATTTCCTCCGAAAACCCTCAAACTGA GATGATGAGGATGACATTTCCTCTGAAAACCCTCAAACTGA < 41bp 0.765149014830232 0.561686430087873 0.08718687 0.115321666 prediction 0.406925169484719 Functional Loss - SMCO2 ENSG00000165935 CDS Human protein_coding chr12:27625775 chr12:27625778 synonymous SNV . 0 24 hm5C_associated_SNPs_95759 0 0 0 0 2 SMCO2 chr12:27625808 5'GT 27625808 Upstream 31bp
chr1 205031052 205031052 1 + C T COAD 205031049 + 205031029 205031069 41 AGGCTGACATTGGCTCCAACCTGCGTTGGGGCTGTGCAGCC AGGCTGACATTGGCTCCAACCTGTGTTGGGGCTGTGCAGCC < 41bp 0.779044021278211 0.575581696049817 0.2968294 0.14429647 prediction 0.406924650456789 Functional Loss - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205031049 chr1:205031052 nonsynonymous SNV 0.745 0 24 hm5C_associated_SNPs_95760 0 0 0 0 2 CNTN2 chr1:205030993 3'AG 205030993 Downstream 60bp
chr1 205031052 205031052 1 + C T COAD 205031049 + 205031029 205031069 41 AGGCTGACATTGGCTCCAACCTGCGTTGGGGCTGTGCAGCC AGGCTGACATTGGCTCCAACCTGTGTTGGGGCTGTGCAGCC < 41bp 0.779044021278211 0.575581696049817 0.2968294 0.14429647 prediction 0.406924650456789 Functional Loss - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205031049 chr1:205031052 nonsynonymous SNV 0.745 0 24 hm5C_associated_SNPs_95760 0 0 0 0 2 CNTN2 chr1:205031129 5'GT 205031129 Upstream 78bp
chr8 145537690 145537690 1 + G A LUSC 145537687 + 145537667 145537707 41 CCCAGGAGCCCCCCAGGCCTCCCGAGGCAGAGAACAGCAGC CCCAGGAGCCCCCCAGGCCTCCCAAGGCAGAGAACAGCAGC < 41bp 0.816532162494384 0.613070466140121 0.40189672 0.22109237 prediction 0.406923392708527 Functional Loss - HSF1 ENSG00000185122 CDS Human protein_coding chr8:145537687 chr8:145537690 nonsynonymous SNV 0.954 0 24 hm5C_associated_SNPs_95761 0 0 1 0 2 HSF1 chr8:145537648 3'AG 145537648 Downstream 43bp
chr8 145537690 145537690 1 + G A LUSC 145537687 + 145537667 145537707 41 CCCAGGAGCCCCCCAGGCCTCCCGAGGCAGAGAACAGCAGC CCCAGGAGCCCCCCAGGCCTCCCAAGGCAGAGAACAGCAGC < 41bp 0.816532162494384 0.613070466140121 0.40189672 0.22109237 prediction 0.406923392708527 Functional Loss - HSF1 ENSG00000185122 CDS Human protein_coding chr8:145537687 chr8:145537690 nonsynonymous SNV 0.954 0 24 hm5C_associated_SNPs_95761 0 0 1 0 2 HSF1 chr8:145537717 5'GT 145537717 Upstream 28bp
chr1 1469362 1469362 1 + C T UCEC 1469360 + 1469340 1469380 41 CCGAGGCCATGATGGACACCCGCGTGCAAGATGCTGTCCAG CCGAGGCCATGATGGACACCCGTGTGCAAGATGCTGTCCAG < 41bp 0.825661427924092 0.622200264841688 0.45212108 0.39501503 prediction 0.406922326164809 Functional Loss - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1469360 chr1:1469362 synonymous SNV . 0 23 hm5C_associated_SNPs_95762 0 0 1 0 1 ATAD3A chr1:1469306 3'AG 1469306 Downstream 57bp
chr7 148288135 148288135 1 + C T rs111320068 148288132 + 148288112 148288152 41 CAAGGCGCCGGATTGACCTTCGCCTGAGTGGGAGGGCAGTC CAAGGCGCCGGATTGACCTTCGCTTGAGTGGGAGGGCAGTC < 41bp 0.71659060812028 0.513129627728216 0.2464334 0.117826045 prediction 0.406921960784129 Functional Loss - C7orf33 ENSG00000170279 CDS Human protein_coding chr7:148288132 chr7:148288135 synonymous SNV . 0 24 hm5C_associated_SNPs_95763 0 0 0 0 1 C7orf33 chr7:148288221 5'GT 148288221 Upstream 87bp
chr11 65770735 65770735 1 + A C COAD 65770734 + 65770714 65770754 41 TGATCAAGATGACAACCTCCCAAAAGCACCGAGACTTCGTG TGATCAAGATGACAACCTCCCCAAAGCACCGAGACTTCGTG < 41bp 0.70346081721733 0.432324711570314 0.02971971 0.008147538 prediction 0.406921634434659 Functional Loss - BANF1 ENSG00000175334 CDS Human protein_coding chr11:65770734 chr11:65770735 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_95764 0 0 1 0 1 BANF1 chr11:65770706 3'AG 65770706 Downstream 30bp
chr10 6259132 6259132 1 + C T LGG 6259129 + 6259109 6259149 41 CGAGTCGGTGTGCGACGACCCTACAGTTGTGGCCTCCAATA CGAGTCGGTGTGCGACGACCCTATAGTTGTGGCCTCCAATA < 41bp 0.78617199463507 0.582713085536898 0.28796524 0.06805906 prediction 0.406917818196344 Functional Loss - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6259129 chr10:6259132 nonsynonymous SNV 0.143 1 24 hm5C_associated_SNPs_95765 0 0 1 0 2 PFKFB3 chr10:6259098 3'AG 6259098 Downstream 35bp
chr10 6259132 6259132 1 + C T LGG 6259129 + 6259109 6259149 41 CGAGTCGGTGTGCGACGACCCTACAGTTGTGGCCTCCAATA CGAGTCGGTGTGCGACGACCCTATAGTTGTGGCCTCCAATA < 41bp 0.78617199463507 0.582713085536898 0.28796524 0.06805906 prediction 0.406917818196344 Functional Loss - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6259129 chr10:6259132 nonsynonymous SNV 0.143 1 24 hm5C_associated_SNPs_95765 0 0 1 0 2 PFKFB3 chr10:6259154 5'GT 6259154 Upstream 23bp
chr14 100793665 100793665 1 + G A UCEC 100793662 + 100793642 100793682 41 AACCCTGACGCCAAGCCCACCAAGGCCGACATCACGCTCTC AACCCTGACGCCAAGCCCACCAAAGCCGACATCACGCTCTC < 41bp 0.707864217450722 0.504406529149652 0.28290308 0.18042123 prediction 0.40691537660214 Functional Loss - SLC25A47 ENSG00000140107 CDS Human protein_coding chr14:100793662 chr14:100793665 synonymous SNV . 0 24 hm5C_associated_SNPs_95766 0 0 0 0 1 SLC25A47 chr14:100793707 5'GT 100793707 Upstream 43bp
chrX 16168773 16168773 1 + G A rs141598090 16168770 + 16168750 16168790 41 GTGGAAGGGAATATACATGTCAAGAAGCAGGTAGGTGCTCA GTGGAAGGGAATATACATGTCAAAAAGCAGGTAGGTGCTCA < 41bp 0.754719400092174 0.551263060012409 0.06663576 0.046339095 prediction 0.406912680159531 Functional Loss - GRPR ENSG00000126010 CDS Human protein_coding chrX:16168770 chrX:16168773 synonymous SNV . 0 24 hm5C_associated_SNPs_95767 0 0 0 0 1 GRPR chrX:16168779 5'GT 16168779 Upstream 7bp
chr5 150056332 150056332 1 + C T BLCA 150056329 + 150056309 150056349 41 TTTCCCAGGCCAGGCACCCCCTTCATCCCGGAGCCCCTCAG TTTCCCAGGCCAGGCACCCCCTTTATCCCGGAGCCCCTCAG < 41bp 0.779415048679361 0.575959845865511 0.10065782 0.04376337 prediction 0.406910405627701 Functional Loss - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150056329 chr5:150056332 nonsynonymous SNV 0.886 0 24 hm5C_associated_SNPs_95771 0 0 0 0 1 MYOZ3 chr5:150056269 3'AG 150056269 Downstream 64bp
chr7 102575117 102575117 1 + G A SKCM 102575114 + 102575094 102575134 41 ATGTGTTTCCCATACAAACACTGGACTGCAAAAGGAAAGGT ATGTGTTTCCCATACAAACACTGAACTGCAAAAGGAAAGGT < 41bp 0.769118385242152 0.565666859794254 0.14690727 0.07089183 prediction 0.406903050895794 Functional Loss - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102575114 chr7:102575117 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_95773 0 0 0 0 1 LRRC17 chr7:102575132 5'GT 102575132 Upstream 16bp
chr14 52186820 52186820 1 + G A COAD 52186817 + 52186797 52186837 41 ACATCAGTGACAACCTGGACCTCGACATGGACCAGCTGGAA ACATCAGTGACAACCTGGACCTCAACATGGACCAGCTGGAA < 41bp 0.793379083474825 0.589929114069477 0.09656727 0.0442968 prediction 0.406899938810695 Functional Loss - FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52186817 chr14:52186820 nonsynonymous SNV 0.797 4 24 hm5C_associated_SNPs_95774 0 0 0 0 1 FRMD6 chr14:52186773 3'AG 52186773 Downstream 48bp
chr22 46685333 46685333 1 + C T COAD 46685331 + 46685311 46685351 41 GAACTGCCAGCACCTCCTGGCCCGAGACGTGGGGCTGCCCC GAACTGCCAGCACCTCCTGGCCTGAGACGTGGGGCTGCCCC < 41bp 0.703448917732265 0.41775145395381 0.43142053 0.2773642 prediction 0.406897835464529 Functional Loss - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46685331 chr22:46685333 stopgain 0.053 0 23 hm5C_associated_SNPs_95775 0 0 1 0 1 TTC38 chr22:46685299 3'AG 46685299 Downstream 35bp
chr3 122552256 122552256 1 + C T PRAD 122552253 + 122552233 122552273 41 CCAGTGTTGCTGCAGCTAGCCAGCGGCTGAGTTATCGGAGA CCAGTGTTGCTGCAGCTAGCCAGTGGCTGAGTTATCGGAGA < 41bp 0.741673592459537 0.538225054927934 0.50454646 0.16832653 prediction 0.406897075063205 Functional Loss - DIRC2 ENSG00000138463 CDS Human protein_coding chr3:122552253 chr3:122552256 nonsynonymous SNV 0.885 4 24 hm5C_associated_SNPs_95776 0 0 0 0 2 DIRC2 chr3:122552164 3'AG 122552164 Downstream 93bp
chr3 122552256 122552256 1 + C T PRAD 122552253 + 122552233 122552273 41 CCAGTGTTGCTGCAGCTAGCCAGCGGCTGAGTTATCGGAGA CCAGTGTTGCTGCAGCTAGCCAGTGGCTGAGTTATCGGAGA < 41bp 0.741673592459537 0.538225054927934 0.50454646 0.16832653 prediction 0.406897075063205 Functional Loss - DIRC2 ENSG00000138463 CDS Human protein_coding chr3:122552253 chr3:122552256 nonsynonymous SNV 0.885 4 24 hm5C_associated_SNPs_95776 0 0 0 0 2 DIRC2 chr3:122552293 5'GT 122552293 Upstream 38bp
chr13 113964005 113964005 1 + C T OV 113964003 + 113963983 113964023 41 ATGCCACAGTGGTGCTCAACCGCAGCTCCTGTGGAAAAGAG ATGCCACAGTGGTGCTCAACCGTAGCTCCTGTGGAAAAGAG < 41bp 0.703447367764774 0.424642982009128 0.34079686 0.33632421 prediction 0.406894735529548 Functional Loss - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113964003 chr13:113964005 synonymous SNV . 0 23 hm5C_associated_SNPs_95778 0 0 1 0 1 LAMP1 chr13:113963958 3'AG 113963958 Downstream 48bp
chr1 167341272 167341272 1 + G T LUAD 167341269 + 167341249 167341289 41 GCTAGCTGGAGGACAGATAACTGGGGTAAGTGTTCACTGAG GCTAGCTGGAGGACAGATAACTGTGGTAAGTGTTCACTGAG < 41bp 0.703447166959854 0.396906379509849 0.9100052 0.42083314 prediction 0.406894333919708 Functional Loss - POU2F1 ENSG00000143190 CDS Human protein_coding chr1:167341269 chr1:167341272 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_95779 0 0 1 2 1 POU2F1 chr1:167341273 5'GT 167341273 Upstream 2bp
chr19 58864791 58864791 1 + C T UCEC 58864789 + 58864769 58864809 41 CCCCACAGCAAGAGAAAGACCACGAGCATGGACATGATGGT CCCCACAGCAAGAGAAAGACCATGAGCATGGACATGATGGT < 41bp 0.846737849335081 0.643291251054128 0.23237789 0.16105151 prediction 0.406893196561906 Functional Loss - A1BG ENSG00000121410 CDS Human antisense chr19:58864789 chr19:58864791 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_95780 0 0 1 1 2 A1BG-AS1 chr19:58864745 3'AG 58864745 Downstream 47bp
chr19 58864791 58864791 1 + C T UCEC 58864789 + 58864769 58864809 41 CCCCACAGCAAGAGAAAGACCACGAGCATGGACATGATGGT CCCCACAGCAAGAGAAAGACCATGAGCATGGACATGATGGT < 41bp 0.846737849335081 0.643291251054128 0.23237789 0.16105151 prediction 0.406893196561906 Functional Loss - A1BG ENSG00000121410 CDS Human antisense chr19:58864789 chr19:58864791 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_95780 0 0 1 1 2 A1BG-AS1 chr19:58864840 5'GT 58864840 Upstream 50bp
chr2 113956440 113956440 1 + G A SKCM 113956437 + 113956417 113956457 41 TTCGTGCGGCCCATCCTGCCCGTGGGCCCCGCCCAGAGCTC TTCGTGCGGCCCATCCTGCCCGTAGGCCCCGCCCAGAGCTC < 41bp 0.703443336498921 0.443766710046562 0.34458768 0.19895485 prediction 0.406886672997841 Functional Loss - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113956437 chr2:113956440 synonymous SNV . 0 24 hm5C_associated_SNPs_95783 0 0 1 0 1 PSD4 chr2:113956461 5'GT 113956461 Upstream 22bp
chr22 35719874 35719874 1 + C T LUSC 35719871 + 35719851 35719891 41 CTGCCCGCCCCGCCCATACTCTCCGGTGACACGCCCATAGC CTGCCCGCCCCGCCCATACTCTCTGGTGACACGCCCATAGC < 41bp 0.764749190697353 0.561306721061774 0.21380818 0.11688241 prediction 0.406884939271159 Functional Loss - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35719871 chr22:35719874 synonymous SNV 0.002 0 24 hm5C_associated_SNPs_95786 0 0 1 0 1 TOM1 chr22:35719907 5'GT 35719907 Upstream 34bp
chr9 35675829 35675829 1 + C T SKCM 35675826 + 35675806 35675846 41 AGTCCCCGGTGGATATCCGCCCCCAGCTCGCCGCCTTCTGC AGTCCCCGGTGGATATCCGCCCCTAGCTCGCCGCCTTCTGC < 41bp 0.703441804104129 0.492029985640699 0.035072118 0.025852054 prediction 0.406883608208257 Functional Loss - CA9 ENSG00000107159 CDS Human protein_coding chr9:35675826 chr9:35675829 stopgain 0.092 0 24 hm5C_associated_SNPs_95787 0 0 1 0 2 CA9 chr9:35675758 3'AG 35675758 Downstream 72bp
chr9 35675829 35675829 1 + C T SKCM 35675826 + 35675806 35675846 41 AGTCCCCGGTGGATATCCGCCCCCAGCTCGCCGCCTTCTGC AGTCCCCGGTGGATATCCGCCCCTAGCTCGCCGCCTTCTGC < 41bp 0.703441804104129 0.492029985640699 0.035072118 0.025852054 prediction 0.406883608208257 Functional Loss - CA9 ENSG00000107159 CDS Human protein_coding chr9:35675826 chr9:35675829 stopgain 0.092 0 24 hm5C_associated_SNPs_95787 0 0 1 0 2 CA9 chr9:35675928 5'GT 35675928 Upstream 100bp
chr9 35675828 35675828 1 + C T SKCM 35675826 + 35675806 35675846 41 AGTCCCCGGTGGATATCCGCCCCCAGCTCGCCGCCTTCTGC AGTCCCCGGTGGATATCCGCCCTCAGCTCGCCGCCTTCTGC < 41bp 0.703441804104129 0.427650431276141 0.035072118 0.09000164 prediction 0.406883608208257 Functional Loss - CA9 ENSG00000107159 CDS Human protein_coding chr9:35675826 chr9:35675828 synonymous SNV . 0 23 hm5C_associated_SNPs_95788 0 0 1 0 1 CA9 chr9:35675758 3'AG 35675758 Downstream 71bp
chr3 129238477 129238477 1 + G C LUSC 129238473 + 129238453 129238493 41 GTGCTGCGCTCCATGAGCCGCCGGGATGTCCTCATCAAGCG GTGCTGCGCTCCATGAGCCGCCGGCATGTCCTCATCAAGCG < 41bp 0.703436697637049 0.414143627959401 0.26669917 0.061361283 prediction 0.406873395274097 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129238473 chr3:129238477 nonsynonymous SNV 0.989 2 25 hm5C_associated_SNPs_95791 0 0 1 0 2 IFT122 chr3:129238411 3'AG 129238411 Downstream 67bp
chr3 129238477 129238477 1 + G C LUSC 129238473 + 129238453 129238493 41 GTGCTGCGCTCCATGAGCCGCCGGGATGTCCTCATCAAGCG GTGCTGCGCTCCATGAGCCGCCGGCATGTCCTCATCAAGCG < 41bp 0.703436697637049 0.414143627959401 0.26669917 0.061361283 prediction 0.406873395274097 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129238473 chr3:129238477 nonsynonymous SNV 0.989 2 25 hm5C_associated_SNPs_95791 0 0 1 0 2 IFT122 chr3:129238575 5'GT 129238575 Upstream 99bp
chr1 165600492 165600492 1 + G C rs9333370 165600491 + 165600471 165600511 41 GCCGCACCCACACCGCGCTGCGCAGTTTTGTTCTGCTCCAG GCCGCACCCACACCGCGCTGCCCAGTTTTGTTCTGCTCCAG < 41bp 0.703432691428202 0.473319950005079 0.08584458 0.06930873 prediction 0.406865382856404 Functional Loss - MGST3 ENSG00000143198 UTR5 Human protein_coding chr1:165600491 chr1:165600492 . . 0 22 hm5C_associated_SNPs_95795 0 0 1 0 1 MGST3 chr1:165600530 5'GT 165600530 Upstream 39bp
chr9 139814868 139814868 1 + C T COAD 139814865 + 139814845 139814885 41 GCCACTTTTGAGAACATTGTCTGCGTCCTGAACCGGGAGGT GCCACTTTTGAGAACATTGTCTGTGTCCTGAACCGGGAGGT < 41bp 0.773285069468066 0.569854101306719 0.13685331 0.22046682 prediction 0.406861936322693 Functional Loss - TRAF2 ENSG00000127191 CDS Human protein_coding chr9:139814865 chr9:139814868 synonymous SNV . 0 24 hm5C_associated_SNPs_95796 0 0 1 0 1 TRAF2 chr9:139814967 5'GT 139814967 Upstream 100bp
chr17 7942761 7942761 1 + G A STAD 7942758 + 7942738 7942778 41 TAGGCCGAGTGCTGCTGCTGCGCGTGCACAAGGCGCCCCCA TAGGCCGAGTGCTGCTGCTGCGCATGCACAAGGCGCCCCCA < 41bp 0.8205067104472 0.61707761957313 0.61490864 0.25527254 prediction 0.406858181748139 Functional Loss - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7942758 chr17:7942761 nonsynonymous SNV 0.987 2 24 hm5C_associated_SNPs_95798 0 0 0 0 1 ALOX15B chr17:7942704 3'AG 7942704 Downstream 58bp
chr2 27663710 27663710 1 + G A UCEC 27663707 + 27663687 27663727 41 TCTGACAGCCTTTGGGCTGCCTCGGCCCCAGCAGCCACAGC TCTGACAGCCTTTGGGCTGCCTCAGCCCCAGCAGCCACAGC < 41bp 0.80327111014853 0.599843148673382 0.25029793 0.17490566 prediction 0.406855922950296 Functional Loss - NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663707 chr2:27663710 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_95799 0 0 1 0 2 NRBP1 chr2:27663672 3'AG 27663672 Downstream 39bp
chr2 27663710 27663710 1 + G A UCEC 27663707 + 27663687 27663727 41 TCTGACAGCCTTTGGGCTGCCTCGGCCCCAGCAGCCACAGC TCTGACAGCCTTTGGGCTGCCTCAGCCCCAGCAGCCACAGC < 41bp 0.80327111014853 0.599843148673382 0.25029793 0.17490566 prediction 0.406855922950296 Functional Loss - NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663707 chr2:27663710 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_95799 0 0 1 0 2 NRBP1 chr2:27663807 5'GT 27663807 Upstream 98bp
chr20 30486303 30486303 1 + G A SKCM 30486300 + 30486280 30486320 41 CAGAGAGCATCGATCCGGTTCAAGACCACCCTCATGAACAC CAGAGAGCATCGATCCGGTTCAAAACCACCCTCATGAACAC < 41bp 0.703427907978671 0.456539729325537 0.047115475 0.03151959 prediction 0.406855815957343 Functional Loss - TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30486300 chr20:30486303 synonymous SNV 0.992 0 24 hm5C_associated_SNPs_95800 0 0 0 0 2 TTLL9 chr20:30486276 3'AG 30486276 Downstream 28bp
chr20 30486303 30486303 1 + G A SKCM 30486300 + 30486280 30486320 41 CAGAGAGCATCGATCCGGTTCAAGACCACCCTCATGAACAC CAGAGAGCATCGATCCGGTTCAAAACCACCCTCATGAACAC < 41bp 0.703427907978671 0.456539729325537 0.047115475 0.03151959 prediction 0.406855815957343 Functional Loss - TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30486300 chr20:30486303 synonymous SNV 0.992 0 24 hm5C_associated_SNPs_95800 0 0 0 0 2 TTLL9 chr20:30486368 5'GT 30486368 Upstream 66bp
chr1 36766621 36766621 1 + G A CESC 36766618 + 36766598 36766638 41 CACCACGGGCTTTGACAAATCAAGACTGGGGACCAAAGACT CACCACGGGCTTTGACAAATCAAAACTGGGGACCAAAGACT < 41bp 0.799351043791344 0.595924323103268 0.35622898 0.24717608 prediction 0.406853441376151 Functional Loss - THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36766618 chr1:36766621 nonsynonymous SNV 0.982 1 24 hm5C_associated_SNPs_95801 0 0 1 0 1 THRAP3 chr1:36766685 5'GT 36766685 Upstream 65bp
chr5 167812240 167812240 1 + G A HNSC 167812237 + 167812217 167812257 41 AACCACTCAGATTGAGGATCCTCGAGTACAATGGCGGCGGG AACCACTCAGATTGAGGATCCTCAAGTACAATGGCGGCGGG < 41bp 0.805977248041379 0.602551949612553 0.68587744 0.8209553 prediction 0.406850596857652 Functional Loss - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167812237 chr5:167812240 nonsynonymous SNV 0.359 4 24 hm5C_associated_SNPs_95805 0 0 1 0 1 WWC1 chr5:167812216 3'AG 167812216 Downstream 25bp
chr6 7862552 7862552 1 + G A UCEC 7862549 + 7862529 7862569 41 TAAAGGAGTCCACGTCCACCCCCGAGCCGCAGGCCTGGTGG TAAAGGAGTCCACGTCCACCCCCAAGCCGCAGGCCTGGTGG < 41bp 0.830356689477707 0.626932431729161 0.1497694 0.0793322 prediction 0.406848515497092 Functional Loss - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7862549 chr6:7862552 nonsynonymous SNV 0.519 1 24 hm5C_associated_SNPs_95806 0 0 0 0 1 BMP6 chr6:7862534 3'AG 7862534 Downstream 19bp
chr14 72169126 72169126 1 + T C GBM 72169125 + 72169105 72169145 41 GTGAGCCGTAGATCCCCAGCCTCCATTGACAGGCAGAACAC GTGAGCCGTAGATCCCCAGCCCCCATTGACAGGCAGAACAC < 41bp 0.703418116733543 0.407029049668877 0.9531575 0.051100224 prediction 0.406836233467086 Functional Loss - SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72169125 chr14:72169126 nonsynonymous SNV 0.948 0 22 hm5C_associated_SNPs_95807 0 0 1 0 2 SIPA1L1 chr14:72169098 3'AG 72169098 Downstream 29bp
chr14 72169126 72169126 1 + T C GBM 72169125 + 72169105 72169145 41 GTGAGCCGTAGATCCCCAGCCTCCATTGACAGGCAGAACAC GTGAGCCGTAGATCCCCAGCCCCCATTGACAGGCAGAACAC < 41bp 0.703418116733543 0.407029049668877 0.9531575 0.051100224 prediction 0.406836233467086 Functional Loss - SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72169125 chr14:72169126 nonsynonymous SNV 0.948 0 22 hm5C_associated_SNPs_95807 0 0 1 0 2 SIPA1L1 chr14:72169222 5'GT 72169222 Upstream 97bp
chr4 155665961 155665961 1 + C T UCEC 155665958 + 155665938 155665978 41 TACAGCCTGCTGTGGAACAACTGCGAGCACTTCGTGACCTA TACAGCCTGCTGTGGAACAACTGTGAGCACTTCGTGACCTA < 41bp 0.747904239266379 0.544488990857937 0.302154 0.20868045 prediction 0.406830496816883 Functional Loss - LRAT ENSG00000121207 CDS Human protein_coding chr4:155665958 chr4:155665961 synonymous SNV . 0 24 hm5C_associated_SNPs_95808 0 0 0 0 1 LRAT chr4:155666018 5'GT 155666018 Upstream 58bp
chr3 9786006 9786006 1 + A C UCEC 9786005 + 9785985 9786025 41 CCGAAGACAGCTGGACCGCCCAAGAGGCCGGGCCGGCCCCC CCGAAGACAGCTGGACCGCCCCAGAGGCCGGGCCGGCCCCC < 41bp 0.843256571550837 0.63984209844262 0.53308773 0.33069944 prediction 0.406828946216433 Functional Loss - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9786005 chr3:9786006 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_95809 0 0 0 0 1 BRPF1 chr3:9785908 3'AG 9785908 Downstream 99bp
chr20 44099101 44099101 1 + C T CESC 44099099 + 44099079 44099119 41 AACTGCACGCAAGAGTGCGTCTCGGACAGCGAATGCGCCGA AACTGCACGCAAGAGTGCGTCTTGGACAGCGAATGCGCCGA < 41bp 0.843440640269092 0.640027870915045 0.24164435 0.12609741 prediction 0.406825538708094 Functional Loss - WFDC2 ENSG00000101443 CDS Human protein_coding chr20:44099099 chr20:44099101 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_95811 0 0 0 0 2 WFDC2 chr20:44099029 3'AG 44099029 Downstream 73bp
chr20 44099101 44099101 1 + C T CESC 44099099 + 44099079 44099119 41 AACTGCACGCAAGAGTGCGTCTCGGACAGCGAATGCGCCGA AACTGCACGCAAGAGTGCGTCTTGGACAGCGAATGCGCCGA < 41bp 0.843440640269092 0.640027870915045 0.24164435 0.12609741 prediction 0.406825538708094 Functional Loss - WFDC2 ENSG00000101443 CDS Human protein_coding chr20:44099099 chr20:44099101 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_95811 0 0 0 0 2 WFDC2 chr20:44099172 5'GT 44099172 Upstream 72bp
chr9 120466776 120466776 1 + G A KIRC 120466773 + 120466753 120466793 41 GATGTCTGCCTCGCGCCTGGCTGGGACTCTGATCCCAGCCA GATGTCTGCCTCGCGCCTGGCTGAGACTCTGATCCCAGCCA < 41bp 0.758959510810573 0.555547924444391 0.89950013 0.7944746 prediction 0.406823172732363 Functional Loss - TLR4 ENSG00000136869 CDS Human protein_coding chr9:120466773 chr9:120466776 nonsynonymous SNV 0.615 1 24 hm5C_associated_SNPs_95812 0 0 0 0 1 TLR4 chr9:120466843 5'GT 120466843 Upstream 68bp
chr9 131395557 131395557 1 + G A UCEC 131395554 + 131395534 131395574 41 CCTACGTGGACGGCAAGGGCCGCGAGCTCCCCACCGCGTTC CCTACGTGGACGGCAAGGGCCGCAAGCTCCCCACCGCGTTC < 41bp 0.77115730682339 0.567748966011151 0.6449652 0.24590087 prediction 0.406816681624477 Functional Loss - SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131395554 chr9:131395557 nonsynonymous SNV 0.346 3 24 hm5C_associated_SNPs_95816 0 0 1 0 1 SPTAN1 chr9:131395488 3'AG 131395488 Downstream 70bp
chr16 8735035 8735035 1 + T C LIHC 8735034 + 8735014 8735054 41 GACTGGCTGAAGGACGACCTCTGCACAGGTGTGTGTTTCTC GACTGGCTGAAGGACGACCTCCGCACAGGTGTGTGTTTCTC < 41bp 0.844820809366394 0.641416567583924 0.5391552 0.28477472 prediction 0.406808483564939 Functional Loss - METTL22 ENSG00000067365 CDS Human protein_coding chr16:8735034 chr16:8735035 nonsynonymous SNV 0.954 1 22 hm5C_associated_SNPs_95817 0 0 1 0 2 METTL22 chr16:8734988 3'AG 8734988 Downstream 48bp
chr16 8735035 8735035 1 + T C LIHC 8735034 + 8735014 8735054 41 GACTGGCTGAAGGACGACCTCTGCACAGGTGTGTGTTTCTC GACTGGCTGAAGGACGACCTCCGCACAGGTGTGTGTTTCTC < 41bp 0.844820809366394 0.641416567583924 0.5391552 0.28477472 prediction 0.406808483564939 Functional Loss - METTL22 ENSG00000067365 CDS Human protein_coding chr16:8735034 chr16:8735035 nonsynonymous SNV 0.954 1 22 hm5C_associated_SNPs_95817 0 0 1 0 2 METTL22 chr16:8735041 5'GT 8735041 Upstream 7bp
chr10 51827929 51827929 1 + G A rs201459362 51827926 + 51827906 51827946 41 GGAGCCCGTGTGGGAGCGGCCGTGGTCGGTGGAGGAGATCC GGAGCCCGTGTGGGAGCGGCCGTAGTCGGTGGAGGAGATCC < 41bp 0.811155068761203 0.607753246318811 0.65258324 0.6764187 prediction 0.406803644884784 Functional Loss - WASHC2A ENSG00000099290 CDS Human protein_coding chr10:51827926 chr10:51827929 stopgain 0.999 1 24 hm5C_associated_SNPs_95819 0 0 0 0 2 WASHC2A chr10:51827865 3'AG 51827865 Downstream 65bp
chr10 51827929 51827929 1 + G A rs201459362 51827926 + 51827906 51827946 41 GGAGCCCGTGTGGGAGCGGCCGTGGTCGGTGGAGGAGATCC GGAGCCCGTGTGGGAGCGGCCGTAGTCGGTGGAGGAGATCC < 41bp 0.811155068761203 0.607753246318811 0.65258324 0.6764187 prediction 0.406803644884784 Functional Loss - WASHC2A ENSG00000099290 CDS Human protein_coding chr10:51827926 chr10:51827929 stopgain 0.999 1 24 hm5C_associated_SNPs_95819 0 0 0 0 2 WASHC2A chr10:51827987 5'GT 51827987 Upstream 59bp
chr12 6627032 6627032 1 + G T LUAD 6627028 + 6627008 6627048 41 AGCAGCTTCTACAGCTTCCCCAGGGAGAGGAGGAGATTCCT AGCAGCTTCTACAGCTTCCCCAGGTAGAGGAGGAGATTCCT < 41bp 0.703397067722541 0.489658778912601 0.64977026 0.5039686 prediction 0.406794135445082 Functional Loss - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6627028 chr12:6627032 nonsynonymous SNV 0.660 1 25 hm5C_associated_SNPs_95823 0 0 1 0 2 NCAPD2 chr12:6626945 3'AG 6626945 Downstream 88bp
chr12 6627032 6627032 1 + G T LUAD 6627028 + 6627008 6627048 41 AGCAGCTTCTACAGCTTCCCCAGGGAGAGGAGGAGATTCCT AGCAGCTTCTACAGCTTCCCCAGGTAGAGGAGGAGATTCCT < 41bp 0.703397067722541 0.489658778912601 0.64977026 0.5039686 prediction 0.406794135445082 Functional Loss - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6627028 chr12:6627032 nonsynonymous SNV 0.660 1 25 hm5C_associated_SNPs_95823 0 0 1 0 2 NCAPD2 chr12:6627125 5'GT 6627125 Upstream 94bp
chr17 40936448 40936448 1 + G A UCEC 40936445 + 40936425 40936465 41 CTGTGGACCCTACAGGGACCCCGGAATTCATGGCCCCCGAG CTGTGGACCCTACAGGGACCCCGAAATTCATGGCCCCCGAG < 41bp 0.703395277404841 0.449384871921473 0.7634999 0.31849608 prediction 0.406790554809683 Functional Loss - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40936445 chr17:40936448 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_95826 0 0 1 0 1 WNK4 chr17:40936440 3'AG 40936440 Downstream 9bp
chr11 63965337 63965337 1 + G A UCEC 63965334 + 63965314 63965354 41 TTTCTTTATCAGAGCATATGCTCGAATTGGCAACTCCTACT TTTCTTTATCAGAGCATATGCTCAAATTGGCAACTCCTACT < 41bp 0.809167026104745 0.605771956073081 0.16663086 0.09343669 prediction 0.406790140063328 Functional Loss - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63965334 chr11:63965337 nonsynonymous SNV 0.943 4 24 hm5C_associated_SNPs_95827 0 0 1 0 1 STIP1 chr11:63965326 3'AG 63965326 Downstream 12bp
chr1 111825284 111825284 1 + G A SKCM 111825281 + 111825261 111825301 41 GCCAGTATGAGTTTGACGGGCTGGACTTTGACTGGGAGTAC GCCAGTATGAGTTTGACGGGCTGAACTTTGACTGGGAGTAC < 41bp 0.759169845898728 0.555777081021112 0.21006712 0.17422816 prediction 0.406785529755231 Functional Loss - CHIAP2 ENSG00000203878 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:111825281 chr1:111825284 . . 0 24 hm5C_associated_SNPs_95831 0 0 0 0 2 CHIAP2 chr1:111825193 3'AG 111825193 Downstream 92bp
chr1 111825284 111825284 1 + G A SKCM 111825281 + 111825261 111825301 41 GCCAGTATGAGTTTGACGGGCTGGACTTTGACTGGGAGTAC GCCAGTATGAGTTTGACGGGCTGAACTTTGACTGGGAGTAC < 41bp 0.759169845898728 0.555777081021112 0.21006712 0.17422816 prediction 0.406785529755231 Functional Loss - CHIAP2 ENSG00000203878 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:111825281 chr1:111825284 . . 0 24 hm5C_associated_SNPs_95831 0 0 0 0 2 CHIAP2 chr1:111825358 5'GT 111825358 Upstream 75bp
chrX 47104264 47104264 1 + T C SKCM 47104263 + 47104243 47104283 41 GACGCAAGCAGCTGTTCACCCTGCAGACGGTGAACTCCAAT GACGCAAGCAGCTGTTCACCCCGCAGACGGTGAACTCCAAT < 41bp 0.852066441870748 0.648675178067601 0.68841374 0.30918807 prediction 0.406782527606295 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47104263 chrX:47104264 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_95832 0 0 1 0 1 USP11 chrX:47104323 5'GT 47104323 Upstream 60bp
chr3 52836473 52836473 1 + G T UCEC 52836469 + 52836449 52836489 41 TTCTACGATGGCTCTGAGATCGTGGTGGCCGGGCGCCTGGT TTCTACGATGGCTCTGAGATCGTGTTGGCCGGGCGCCTGGT < 41bp 0.753796299862461 0.550406490410869 0.9034773 0.4284429 prediction 0.406779618903185 Functional Loss - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52836469 chr3:52836473 nonsynonymous SNV 0.962 4 25 hm5C_associated_SNPs_95835 0 0 1 0 1 ITIH3 chr3:52836535 5'GT 52836535 Upstream 63bp
chr10 127412441 127412441 1 + G T TGCT 127412439 + 127412419 127412459 41 CACGTGAGCATGGCAGTACACCGCATAGGAAGGACTCTCTT CACGTGAGCATGGCAGTACACCTCATAGGAAGGACTCTCTT < 41bp 0.703386895657254 0.370357857084829 0.08671492 0.09676707 prediction 0.406773791314508 Functional Loss - EDRF1 ENSG00000107938 CDS Human protein_coding chr10:127412439 chr10:127412441 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_95837 0 0 1 0 2 EDRF1 chr10:127412380 3'AG 127412380 Downstream 62bp
chr10 127412441 127412441 1 + G T TGCT 127412439 + 127412419 127412459 41 CACGTGAGCATGGCAGTACACCGCATAGGAAGGACTCTCTT CACGTGAGCATGGCAGTACACCTCATAGGAAGGACTCTCTT < 41bp 0.703386895657254 0.370357857084829 0.08671492 0.09676707 prediction 0.406773791314508 Functional Loss - EDRF1 ENSG00000107938 CDS Human protein_coding chr10:127412439 chr10:127412441 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_95837 0 0 1 0 2 EDRF1 chr10:127412505 5'GT 127412505 Upstream 65bp
chrX 152088883 152088883 1 + C T UCEC 152088880 + 152088860 152088900 41 GTGTCACCCCAGGTCAGAGGCTGCAAGCGGTGTTCTGAGGA GTGTCACCCCAGGTCAGAGGCTGTAAGCGGTGTTCTGAGGA < 41bp 0.765234760462095 0.561851844699005 0.37745523 0.328485 prediction 0.40676583152618 Functional Loss - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152088880 chrX:152088883 nonsynonymous SNV 0.127 2 24 hm5C_associated_SNPs_95843 0 0 0 0 1 ZNF185 chrX:152088955 5'GT 152088955 Upstream 73bp
chr14 105394159 105394159 1 + G T KICH 105394155 + 105394135 105394175 41 GGAGCATGGCTCCAGCCCAGCTTGGGAGCCCCTGGAAGCAG GGAGCATGGCTCCAGCCCAGCTTGTGAGCCCCTGGAAGCAG < 41bp 0.729134565449599 0.525756918181477 0.10220474 0.09233171 prediction 0.406755294536243 Functional Loss - PLD4 ENSG00000166428 CDS Human protein_coding chr14:105394155 chr14:105394159 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_95845 0 0 0 0 1 PLD4 chr14:105394203 5'GT 105394203 Upstream 45bp
chr19 17660297 17660297 1 + G A LUSC 17660294 + 17660274 17660314 41 CCAATGATGTATCCTGCACTCTGGACGGCTGCTTGGAGGTC CCAATGATGTATCCTGCACTCTGAACGGCTGCTTGGAGGTC < 41bp 0.820095372713618 0.616718342502432 0.250974 0.086827844 prediction 0.406754060422371 Functional Loss - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17660294 chr19:17660297 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_95846 0 0 0 0 3 FAM129C chr19:17660253 3'AG 17660253 Downstream 45bp
chr19 17660297 17660297 1 + G A LUSC 17660294 + 17660274 17660314 41 CCAATGATGTATCCTGCACTCTGGACGGCTGCTTGGAGGTC CCAATGATGTATCCTGCACTCTGAACGGCTGCTTGGAGGTC < 41bp 0.820095372713618 0.616718342502432 0.250974 0.086827844 prediction 0.406754060422371 Functional Loss - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17660294 chr19:17660297 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_95846 0 0 0 0 3 FAM129C chr19:17660264 3'AG 17660264 Downstream 34bp
chr19 17660297 17660297 1 + G A LUSC 17660294 + 17660274 17660314 41 CCAATGATGTATCCTGCACTCTGGACGGCTGCTTGGAGGTC CCAATGATGTATCCTGCACTCTGAACGGCTGCTTGGAGGTC < 41bp 0.820095372713618 0.616718342502432 0.250974 0.086827844 prediction 0.406754060422371 Functional Loss - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17660294 chr19:17660297 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_95846 0 0 0 0 3 FAM129C chr19:17660336 5'GT 17660336 Upstream 40bp
chr15 93015689 93015689 1 + C T OV 93015686 + 93015666 93015706 41 GCTGAAGCCAACATTGTTAACACCATCTCAGCTCAAAAGCC GCTGAAGCCAACATTGTTAACACTATCTCAGCTCAAAAGCC < 41bp 0.703375087571813 0.499223344331341 0.06360242 0.096346796 prediction 0.406750175143626 Functional Loss - C15orf32 ENSG00000183643 CDS Human lincRNA chr15:93015686 chr15:93015689 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_95849 0 0 0 0 1 C15orf32 chr15:93015752 5'GT 93015752 Upstream 64bp
chr9 99220816 99220816 1 + G A UCEC 99220813 + 99220793 99220833 41 ACTTCACAGCTGAGAAGTTTCCAGATGAAAAGTATGTGCTG ACTTCACAGCTGAGAAGTTTCCAAATGAAAAGTATGTGCTG < 41bp 0.823641057310967 0.620266543969224 0.86298835 0.6550224 prediction 0.406749026683487 Functional Loss - HABP4 ENSG00000130956 CDS Human protein_coding chr9:99220813 chr9:99220816 nonsynonymous SNV 0.270 0 24 hm5C_associated_SNPs_95850 0 0 1 0 1 HABP4 chr9:99220823 5'GT 99220823 Upstream 8bp
chr12 7021952 7021952 1 + C T UCEC 7021949 + 7021929 7021969 41 AGCTTCGAGACCTGCCCAAGCTGCGAGCGTTGGTGCTGCTT AGCTTCGAGACCTGCCCAAGCTGTGAGCGTTGGTGCTGCTT < 41bp 0.703374306175859 0.476740868847004 0.17634425 0.14957759 prediction 0.406748612351717 Functional Loss - LRRC23 ENSG00000010626 CDS Human protein_coding chr12:7021949 chr12:7021952 stopgain 0.993 0 24 hm5C_associated_SNPs_95851 0 0 0 0 1 LRRC23 chr12:7021894 3'AG 7021894 Downstream 59bp
chr2 178977514 178977514 1 + A C LUSC 178977513 + 178977493 178977533 41 GCCCGCAGCTCACAGGCCTGCAGGGCCATGGAGGAGATGCA GCCCGCAGCTCACAGGCCTGCCGGGCCATGGAGGAGATGCA < 41bp 0.841082566729457 0.637709065914949 0.7225936 0.37734744 prediction 0.406747001629018 Functional Loss - RBM45 ENSG00000155636 CDS Human protein_coding chr2:178977513 chr2:178977514 synonymous SNV . 0 22 hm5C_associated_SNPs_95854 0 0 1 0 1 RBM45 chr2:178977573 5'GT 178977573 Upstream 60bp
chr19 35644855 35644855 1 + T C rs62111370 35644854 + 35644834 35644874 41 AACTCCGCTGCCGACCCTGCCTGAGCGCGGGAGCCTGAGGA AACTCCGCTGCCGACCCTGCCCGAGCGCGGGAGCCTGAGGA < 41bp 0.754186342093238 0.550814157119281 0.18744728 0.18199405 prediction 0.406744369947914 Functional Loss - FXYD7 ENSG00000221946 UTR3 Human protein_coding chr19:35644854 chr19:35644855 . . 0 22 hm5C_associated_SNPs_95856 0 0 0 0 1 FXYD7 chr19:35644797 3'AG 35644797 Downstream 59bp
chr14 23846561 23846561 1 + A T LUAD 23846559 + 23846539 23846579 41 AAGGCCTTCCTCACCTCCCACAAGGGCATCCTGCTGGAAAC AAGGCCTTCCTCACCTCCCACATGGGCATCCTGCTGGAAAC < 41bp 0.72315751270353 0.519787501800298 0.61959606 0.31853318 prediction 0.406740021806463 Functional Loss - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23846559 chr14:23846561 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_95860 0 0 0 1 1 CMTM5 chr14:23846586 5'GT 23846586 Upstream 26bp
chr9 91934645 91934645 1 + G T UCEC 91934643 + 91934623 91934663 41 TGTGGCATGGTTAGAGTCCTCAGAAGCATGTGTCTTCCCCA TGTGGCATGGTTAGAGTCCTCATAAGCATGTGTCTTCCCCA < 41bp 0.882599970173777 0.67923018215423 0.7377206 0.29973406 prediction 0.406739576039095 Functional Loss - SECISBP2 ENSG00000187742 CDS Human protein_coding chr9:91934643 chr9:91934645 stopgain 0.979 2 23 hm5C_associated_SNPs_95861 0 0 1 0 1 SECISBP2 chr9:91934567 3'AG 91934567 Downstream 79bp
chrX 106482206 106482206 1 + G A SKCM 106482203 + 106482183 106482223 41 CTGATATTCAAATTGATATCCAGGAAACAATCCTTGACCTT CTGATATTCAAATTGATATCCAGAAAACAATCCTTGACCTT < 41bp 0.76552609690645 0.562157173622419 0.73809946 0.39004093 prediction 0.406737846568061 Functional Loss - PIH1D3 ENSG00000080572 CDS Human protein_coding chrX:106482203 chrX:106482206 nonsynonymous SNV 0.959 2 24 hm5C_associated_SNPs_95863 0 0 0 0 2 PIH1D3 chrX:106482152 3'AG 106482152 Downstream 55bp
chrX 106482206 106482206 1 + G A SKCM 106482203 + 106482183 106482223 41 CTGATATTCAAATTGATATCCAGGAAACAATCCTTGACCTT CTGATATTCAAATTGATATCCAGAAAACAATCCTTGACCTT < 41bp 0.76552609690645 0.562157173622419 0.73809946 0.39004093 prediction 0.406737846568061 Functional Loss - PIH1D3 ENSG00000080572 CDS Human protein_coding chrX:106482203 chrX:106482206 nonsynonymous SNV 0.959 2 24 hm5C_associated_SNPs_95863 0 0 0 0 2 PIH1D3 chrX:106482237 5'GT 106482237 Upstream 32bp
chr17 7909966 7909966 1 + C T rs565948960 7909964 + 7909944 7909984 41 CGGTACCCGGATGCACTTCCCGCGTGGGGGATCAGCACCCG CGGTACCCGGATGCACTTCCCGTGTGGGGGATCAGCACCCG < 41bp 0.847199909957814 0.64383352317439 0.34513676 0.3490339 prediction 0.406732773566849 Functional Loss - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7909964 chr17:7909966 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_95865 0 0 0 0 1 GUCY2D chr17:7910032 5'GT 7910032 Upstream 67bp
chr3 50231237 50231237 1 + G A UCEC 50231234 + 50231214 50231254 41 ACCCCGGGCTACGTGCCCACCGAGCAGGACGTGCTGCGCTC ACCCCGGGCTACGTGCCCACCGAACAGGACGTGCTGCGCTC < 41bp 0.83247579871643 0.629110800132477 0.25146198 0.15416095 prediction 0.406729997167906 Functional Loss - GNAT1 ENSG00000114349 CDS Human protein_coding chr3:50231234 chr3:50231237 synonymous SNV . 0 24 hm5C_associated_SNPs_95866 0 0 0 0 2 GNAT1 chr3:50231186 3'AG 50231186 Downstream 52bp
chr3 50231237 50231237 1 + G A UCEC 50231234 + 50231214 50231254 41 ACCCCGGGCTACGTGCCCACCGAGCAGGACGTGCTGCGCTC ACCCCGGGCTACGTGCCCACCGAACAGGACGTGCTGCGCTC < 41bp 0.83247579871643 0.629110800132477 0.25146198 0.15416095 prediction 0.406729997167906 Functional Loss - GNAT1 ENSG00000114349 CDS Human protein_coding chr3:50231234 chr3:50231237 synonymous SNV . 0 24 hm5C_associated_SNPs_95866 0 0 0 0 2 GNAT1 chr3:50231314 5'GT 50231314 Upstream 78bp
chr5 79801835 79801835 1 + G A rs183142627 79801832 + 79801812 79801852 41 TGATCCGCCTGCCTTGGCCTCGCGAAGTGCTGGGATTACAG TGATCCGCCTGCCTTGGCCTCGCAAAGTGCTGGGATTACAG < 41bp 0.79570388879255 0.592344588829334 0.9201027 0.39181733 prediction 0.406718599926433 Functional Loss - FAM151B ENSG00000152380 UTR3 Human protein_coding chr5:79801832 chr5:79801835 . . 0 24 hm5C_associated_SNPs_95871 0 0 0 0 2 FAM151B chr5:79801762 3'AG 79801762 Downstream 74bp
chr5 79801835 79801835 1 + G A rs183142627 79801832 + 79801812 79801852 41 TGATCCGCCTGCCTTGGCCTCGCGAAGTGCTGGGATTACAG TGATCCGCCTGCCTTGGCCTCGCAAAGTGCTGGGATTACAG < 41bp 0.79570388879255 0.592344588829334 0.9201027 0.39181733 prediction 0.406718599926433 Functional Loss - FAM151B ENSG00000152380 UTR3 Human protein_coding chr5:79801832 chr5:79801835 . . 0 24 hm5C_associated_SNPs_95871 0 0 0 0 2 FAM151B chr5:79801895 5'GT 79801895 Upstream 61bp
chr1 111773484 111773484 1 + C T GBM 111773482 + 111773462 111773502 41 TCTCATCTCATCTATTCATTCGCCAGCATCGAAAACAACAA TCTCATCTCATCTATTCATTCGTCAGCATCGAAAACAACAA < 41bp 0.722634712281873 0.519276615040922 0.036550462 0.042292625 prediction 0.406716194481901 Functional Loss - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111773482 chr1:111773484 nonsynonymous SNV 0.929 3 23 hm5C_associated_SNPs_95872 0 0 0 0 1 CHI3L2 chr1:111773565 5'GT 111773565 Upstream 82bp
chr20 12989951 12989951 1 + G A OV 12989948 + 12989928 12989968 41 GGAGGTGGTGCTGTTTGCAACGGGAAACTTCACAATCACAA GGAGGTGGTGCTGTTTGCAACGGAAAACTTCACAATCACAA < 41bp 0.793100988031248 0.589743530060359 0.2962389 0.19485724 prediction 0.406714915941779 Functional Loss - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:12989948 chr20:12989951 synonymous SNV . 0 24 hm5C_associated_SNPs_95873 0 0 1 0 1 SPTLC3 chr20:12990032 5'GT 12990032 Upstream 82bp
chr16 66643845 66643845 1 + C T GBM 66643842 + 66643822 66643862 41 GATTTCTACCTGATCTTTAACGACGTGGCCAAATTCCTCAA GATTTCTACCTGATCTTTAACGATGTGGCCAAATTCCTCAA < 41bp 0.745495174242789 0.54214021116151 0.8745123 0.5440278 prediction 0.406709926162559 Functional Loss - CMTM3 ENSG00000140931 CDS Human protein_coding chr16:66643842 chr16:66643845 synonymous SNV . 0 24 hm5C_associated_SNPs_95875 0 0 1 0 2 CMTM3 chr16:66643786 3'AG 66643786 Downstream 60bp
chr16 66643845 66643845 1 + C T GBM 66643842 + 66643822 66643862 41 GATTTCTACCTGATCTTTAACGACGTGGCCAAATTCCTCAA GATTTCTACCTGATCTTTAACGATGTGGCCAAATTCCTCAA < 41bp 0.745495174242789 0.54214021116151 0.8745123 0.5440278 prediction 0.406709926162559 Functional Loss - CMTM3 ENSG00000140931 CDS Human protein_coding chr16:66643842 chr16:66643845 synonymous SNV . 0 24 hm5C_associated_SNPs_95875 0 0 1 0 2 CMTM3 chr16:66643906 5'GT 66643906 Upstream 62bp
chr1 3670779 3670779 1 + C T BRCA 3670777 + 3670757 3670797 41 CCTGACTGCCCCCAGTTCAGCACCAGGGCCACATCCATGTC CCTGACTGCCCCCAGTTCAGCATCAGGGCCACATCCATGTC < 41bp 0.860872634526495 0.657518377764353 0.31875026 0.25058562 prediction 0.406708513524283 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3670777 chr1:3670779 nonsynonymous SNV 0.170 3 23 hm5C_associated_SNPs_95877 0 0 0 0 1 CCDC27 chr1:3670805 5'GT 3670805 Upstream 27bp
chr10 86007409 86007409 1 + C T COAD 86007406 + 86007386 86007426 41 CTTTCTGCAAGACCCCGGAGCTGCGGACTCCCTGCCACCTA CTTTCTGCAAGACCCCGGAGCTGTGGACTCCCTGCCACCTA < 41bp 0.703353281822436 0.480066386925849 0.24764097 0.13596326 prediction 0.406706563644873 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86007406 chr10:86007409 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_95878 0 0 0 0 3 RGR chr10:86007347 3'AG 86007347 Downstream 63bp
chr10 86007409 86007409 1 + C T COAD 86007406 + 86007386 86007426 41 CTTTCTGCAAGACCCCGGAGCTGCGGACTCCCTGCCACCTA CTTTCTGCAAGACCCCGGAGCTGTGGACTCCCTGCCACCTA < 41bp 0.703353281822436 0.480066386925849 0.24764097 0.13596326 prediction 0.406706563644873 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86007406 chr10:86007409 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_95878 0 0 0 0 3 RGR chr10:86007397 3'AG 86007397 Downstream 13bp
chr10 86007409 86007409 1 + C T COAD 86007406 + 86007386 86007426 41 CTTTCTGCAAGACCCCGGAGCTGCGGACTCCCTGCCACCTA CTTTCTGCAAGACCCCGGAGCTGTGGACTCCCTGCCACCTA < 41bp 0.703353281822436 0.480066386925849 0.24764097 0.13596326 prediction 0.406706563644873 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86007406 chr10:86007409 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_95878 0 0 0 0 3 RGR chr10:86007503 5'GT 86007503 Upstream 95bp
chr4 148463676 148463676 1 + C T BLCA 148463674 + 148463654 148463694 41 CAGTCCAAAAGTCTGATGACCTCGGTCCCCATGAACGGAAC CAGTCCAAAAGTCTGATGACCTTGGTCCCCATGAACGGAAC < 41bp 0.703352480362477 0.423365635902823 0.20365822 0.17301235 prediction 0.406704960724954 Functional Loss - EDNRA ENSG00000151617 CDS Human protein_coding chr4:148463674 chr4:148463676 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_95879 0 0 0 0 1 EDNRA chr4:148463630 3'AG 148463630 Downstream 47bp
chr20 31619551 31619551 1 + G T BLCA 31619549 + 31619529 31619569 41 TTGGGCATGGACATCATGAACCGTGGTGAGCTTGTGGGCCC TTGGGCATGGACATCATGAACCTTGGTGAGCTTGTGGGCCC < 41bp 0.703350222051624 0.351842144492024 0.39742908 0.08814192 prediction 0.406700444103249 Functional Loss - BPIFB6 ENSG00000167104;ENSG00000167104 exonic;splicing Human protein_coding chr20:31619549 chr20:31619551 nonsynonymous SNV 0.292 0 23 hm5C_associated_SNPs_95883 0 0 0 0 1 BPIFB6 chr20:31619553 5'GT 31619553 Upstream 3bp
chr19 45974075 45974075 1 + C T SKCM 45974072 + 45974052 45974092 41 GACATGCCGGGAACCAGCTACTCCACACCAGGCATGAGTGG GACATGCCGGGAACCAGCTACTCTACACCAGGCATGAGTGG < 41bp 0.703348757715973 0.47582137759341 0.94489944 0.90585643 prediction 0.406697515431945 Functional Loss - FOSB ENSG00000125740 CDS Human protein_coding chr19:45974072 chr19:45974075 synonymous SNV . 0 24 hm5C_associated_SNPs_95885 0 0 0 0 1 FOSB chr19:45974004 3'AG 45974004 Downstream 72bp
chr14 95108170 95108170 1 + C T SKCM 95108168 + 95108148 95108188 41 AGCAGCAGACCCAGGGGAAGCTCGGGGCCTGGGAGAAGGAC AGCAGCAGACCCAGGGGAAGCTTGGGGCCTGGGAGAAGGAC < 41bp 0.808218298066843 0.604869788427805 0.8377985 0.55095047 prediction 0.406697019278075 Functional Loss - SERPINA13P ENSG00000187483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr14:95108168 chr14:95108170 . . 0 23 hm5C_associated_SNPs_95886 0 0 0 0 1 SERPINA13P chr14:95108237 5'GT 95108237 Upstream 68bp
chr18 72183561 72183561 1 + G T LUAD 72183558 + 72183538 72183578 41 GGGGCCAAGACCGTGATTCCCAGGAAGGTGGTTGGCAAGTT GGGGCCAAGACCGTGATTCCCAGTAAGGTGGTTGGCAAGTT < 41bp 0.940410969920905 0.737065383505706 0.90112245 0.22389123 prediction 0.406691172830398 Functional Loss - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72183558 chr18:72183561 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_95888 0 0 1 0 1 CNDP2 chr18:72183463 3'AG 72183463 Downstream 99bp
chr16 77850905 77850905 1 + T C ESCA 77850904 + 77850884 77850924 41 GGTGCCAGGATTTGAGTGTTCTGGGATTGTTGAAGCTCTGG GGTGCCAGGATTTGAGTGTTCCGGGATTGTTGAAGCTCTGG < 41bp 0.808578790898042 0.605233443486631 0.37242937 0.5498612 prediction 0.406690694822822 Functional Loss - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77850904 chr16:77850905 synonymous SNV . 0 22 hm5C_associated_SNPs_95889 0 0 0 0 2 VAT1L chr16:77850818 3'AG 77850818 Downstream 88bp
chr16 77850905 77850905 1 + T C ESCA 77850904 + 77850884 77850924 41 GGTGCCAGGATTTGAGTGTTCTGGGATTGTTGAAGCTCTGG GGTGCCAGGATTTGAGTGTTCCGGGATTGTTGAAGCTCTGG < 41bp 0.808578790898042 0.605233443486631 0.37242937 0.5498612 prediction 0.406690694822822 Functional Loss - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77850904 chr16:77850905 synonymous SNV . 0 22 hm5C_associated_SNPs_95889 0 0 0 0 2 VAT1L chr16:77850947 5'GT 77850947 Upstream 43bp
chr4 76730164 76730164 1 + A T SKCM 76730160 + 76730140 76730180 41 AATCTGTGGAGATCACCAAACTACAGACAGAAAAGCAGGAA AATCTGTGGAGATCACCAAACTACTGACAGAAAAGCAGGAA < 41bp 0.703344599826353 0.354391293741855 0.103859395 0.15426764 prediction 0.406689199652706 Functional Loss - USO1 ENSG00000138768 CDS Human protein_coding chr4:76730160 chr4:76730164 nonsynonymous SNV 0.800 1 25 hm5C_associated_SNPs_95890 0 0 1 0 2 USO1 chr4:76730106 3'AG 76730106 Downstream 59bp
chr4 76730164 76730164 1 + A T SKCM 76730160 + 76730140 76730180 41 AATCTGTGGAGATCACCAAACTACAGACAGAAAAGCAGGAA AATCTGTGGAGATCACCAAACTACTGACAGAAAAGCAGGAA < 41bp 0.703344599826353 0.354391293741855 0.103859395 0.15426764 prediction 0.406689199652706 Functional Loss - USO1 ENSG00000138768 CDS Human protein_coding chr4:76730160 chr4:76730164 nonsynonymous SNV 0.800 1 25 hm5C_associated_SNPs_95890 0 0 1 0 2 USO1 chr4:76730204 5'GT 76730204 Upstream 41bp
chr8 63659610 63659610 1 + G A rs1319275 63659607 + 63659587 63659627 41 CATGGCATGATGGACGATTACACGTACGTCTCTGTCACAGG CATGGCATGATGGACGATTACACATACGTCTCTGTCACAGG < 41bp 0.703343663764283 0.497843754444221 0.097813934 0.049119353 prediction 0.406687327528566 Functional Loss - NKAIN3 ENSG00000185942 CDS Human protein_coding chr8:63659607 chr8:63659610 synonymous SNV . 0 24 hm5C_associated_SNPs_95891 0 0 0 0 1 NKAIN3 chr8:63659688 5'GT 63659688 Upstream 79bp
chr2 231174699 231174699 1 + A C BLCA 231174695 + 231174675 231174715 41 GGAGGGGAGCTGTTCTGTTGCGACACTTGTTCAAGAGTCTT GGAGGGGAGCTGTTCTGTTGCGACCCTTGTTCAAGAGTCTT < 41bp 0.703340723124823 0.286676314656254 0.3444702 0.12230921 prediction 0.406681446249647 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231174695 chr2:231174699 nonsynonymous SNV 0.009 4 25 hm5C_associated_SNPs_95894 0 0 0 1 2 SP140 chr2:231174639 3'AG 231174639 Downstream 61bp
chr2 231174699 231174699 1 + A C BLCA 231174695 + 231174675 231174715 41 GGAGGGGAGCTGTTCTGTTGCGACACTTGTTCAAGAGTCTT GGAGGGGAGCTGTTCTGTTGCGACCCTTGTTCAAGAGTCTT < 41bp 0.703340723124823 0.286676314656254 0.3444702 0.12230921 prediction 0.406681446249647 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231174695 chr2:231174699 nonsynonymous SNV 0.009 4 25 hm5C_associated_SNPs_95894 0 0 0 1 2 SP140 chr2:231174754 5'GT 231174754 Upstream 56bp
chr17 49365435 49365435 1 + C T BLCA 49365433 + 49365413 49365453 41 TATACAATCAAGATTCTTGTCTCCAAGAAACAAACCCAAAG TATACAATCAAGATTCTTGTCTTCAAGAAACAAACCCAAAG < 41bp 0.703338500665821 0.393968866554019 0.9556482 0.099630564 prediction 0.406677001331642 Functional Loss - UTP18 ENSG00000011260 CDS Human protein_coding chr17:49365433 chr17:49365435 synonymous SNV . 0 23 hm5C_associated_SNPs_95896 0 0 1 0 1 UTP18 chr17:49365390 3'AG 49365390 Downstream 46bp
chr16 71406132 71406132 1 + G A SKCM 71406129 + 71406109 71406149 41 AAGGCAAGGAAAGGCTCTGGCATGGTAAGCCCAGCCCTGTC AAGGCAAGGAAAGGCTCTGGCATAGTAAGCCCAGCCCTGTC < 41bp 0.703335754828242 0.455620669817597 0.41405082 0.14681163 prediction 0.406671509656483 Functional Loss - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71406129 chr16:71406132 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_95899 0 0 0 1 2 CALB2 chr16:71406056 3'AG 71406056 Downstream 77bp
chr16 71406132 71406132 1 + G A SKCM 71406129 + 71406109 71406149 41 AAGGCAAGGAAAGGCTCTGGCATGGTAAGCCCAGCCCTGTC AAGGCAAGGAAAGGCTCTGGCATAGTAAGCCCAGCCCTGTC < 41bp 0.703335754828242 0.455620669817597 0.41405082 0.14681163 prediction 0.406671509656483 Functional Loss - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71406129 chr16:71406132 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_95899 0 0 0 1 2 CALB2 chr16:71406132 5'GT 71406132 Upstream 1bp
chr20 4164164 4164164 1 + C T STAD 4164162 + 4164142 4164182 41 GAACCCCAACATTCCAAAACCTCGGCGAATCTTGCGCTCGG GAACCCCAACATTCCAAAACCTTGGCGAATCTTGCGCTCGG < 41bp 0.703333414006089 0.421585361629216 0.2673701 0.16585839 prediction 0.406666828012178 Functional Loss - SMOX ENSG00000088826 CDS Human protein_coding chr20:4164162 chr20:4164164 nonsynonymous SNV 0.983 2 23 hm5C_associated_SNPs_95901 0 0 0 0 1 SMOX chr20:4164141 3'AG 4164141 Downstream 24bp
chr13 47255893 47255893 1 + G A UCEC 47255890 + 47255870 47255910 41 ATACAGGATGTCAGCTGCAACGAGATCACAGCGTTGCCCCA ATACAGGATGTCAGCTGCAACGAAATCACAGCGTTGCCCCA < 41bp 0.703333150370757 0.454859193886172 0.5819823 0.13234988 prediction 0.406666300741515 Functional Loss - LRCH1 ENSG00000136141 CDS Human protein_coding chr13:47255890 chr13:47255893 synonymous SNV . 0 24 hm5C_associated_SNPs_95903 0 0 0 0 2 LRCH1 chr13:47255876 3'AG 47255876 Downstream 18bp
chr13 47255893 47255893 1 + G A UCEC 47255890 + 47255870 47255910 41 ATACAGGATGTCAGCTGCAACGAGATCACAGCGTTGCCCCA ATACAGGATGTCAGCTGCAACGAAATCACAGCGTTGCCCCA < 41bp 0.703333150370757 0.454859193886172 0.5819823 0.13234988 prediction 0.406666300741515 Functional Loss - LRCH1 ENSG00000136141 CDS Human protein_coding chr13:47255890 chr13:47255893 synonymous SNV . 0 24 hm5C_associated_SNPs_95903 0 0 0 0 2 LRCH1 chr13:47255981 5'GT 47255981 Upstream 89bp
chr19 14717891 14717891 1 + G T UCEC 14717889 + 14717869 14717909 41 AGGAAGGGGACTGGAGGTGGCTGGATGGGTCTCCTGTGACA AGGAAGGGGACTGGAGGTGGCTTGATGGGTCTCCTGTGACA < 41bp 0.916257057220134 0.712926803989836 0.8788874 0.45064285 prediction 0.406660506460596 Functional Loss - CLEC17A ENSG00000187912 CDS Human protein_coding chr19:14717889 chr19:14717891 synonymous SNV . 0 23 hm5C_associated_SNPs_95908 0 0 0 0 1 CLEC17A chr19:14717805 3'AG 14717805 Downstream 87bp
chr6 87864961 87864961 1 + G C rs183502603 87864960 + 87864940 87864980 41 GGGGAAAGCCACGCCGGGATCGGGACGCCGGAGAGGGTCGC GGGGAAAGCCACGCCGGGATCCGGACGCCGGAGAGGGTCGC < 41bp 0.86710319224493 0.66377764721885 0.91555935 0.89032173 prediction 0.40665109005216 Functional Loss - ZNF292 ENSG00000272008 ncRNA_exonic Human antisense chr6:87864960 chr6:87864961 . . 0 22 hm5C_associated_SNPs_95910 0 0 0 0 1 ZNF292 chr6:87864909 3'AG 87864909 Downstream 53bp
chr6 42902286 42902286 1 + G A LGG 42902283 + 42902263 42902303 41 AAGACCAAGGAGGTGATTGGCACGGGCTATGGCATCCTGGA AAGACCAAGGAGGTGATTGGCACAGGCTATGGCATCCTGGA < 41bp 0.806846869024923 0.603523490759488 0.9162682 0.84339535 prediction 0.406646756530869 Functional Loss - CNPY3 ENSG00000137161 CDS Human protein_coding chr6:42902283 chr6:42902286 synonymous SNV . 0 24 hm5C_associated_SNPs_95912 0 0 1 0 1 CNPY3 chr6:42902336 5'GT 42902336 Upstream 51bp
chr6 88046811 88046811 1 + A C KIRP 88046810 + 88046790 88046830 41 CACCCAAAGAGAAAGAGTTTCAAAGCCCAGGGCTCAGAGGG CACCCAAAGAGAAAGAGTTTCCAAGCCCAGGGCTCAGAGGG < 41bp 0.703319152982129 0.436876712210396 0.16941932 0.12172493 prediction 0.406638305964258 Functional Loss - SMIM8 ENSG00000111850;ENSG00000226524 CDS Human other chr6:88046810 chr6:88046811 nonsynonymous SNV 0.993 0 22 hm5C_associated_SNPs_95916 0 0 1 0 2 SMIM8 chr6:88046727 3'AG 88046727 Downstream 85bp
chr6 88046811 88046811 1 + A C KIRP 88046810 + 88046790 88046830 41 CACCCAAAGAGAAAGAGTTTCAAAGCCCAGGGCTCAGAGGG CACCCAAAGAGAAAGAGTTTCCAAGCCCAGGGCTCAGAGGG < 41bp 0.703319152982129 0.436876712210396 0.16941932 0.12172493 prediction 0.406638305964258 Functional Loss - SMIM8 ENSG00000111850;ENSG00000226524 CDS Human other chr6:88046810 chr6:88046811 nonsynonymous SNV 0.993 0 22 hm5C_associated_SNPs_95916 0 0 1 0 2 SMIM8 chr6:88046884 5'GT 88046884 Upstream 74bp
chr22 41922373 41922373 1 + C T OV 41922370 + 41922350 41922390 41 AACCTGCTCATTGGTGCCATCAACATTGAAAACGGCAAGGC AACCTGCTCATTGGTGCCATCAATATTGAAAACGGCAAGGC < 41bp 0.703318963014124 0.478277831070222 0.1176236 0.1149095 prediction 0.406637926028248 Functional Loss - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41922370 chr22:41922373 synonymous SNV . 0 24 hm5C_associated_SNPs_95917 0 0 1 0 1 ACO2 chr22:41922457 5'GT 41922457 Upstream 85bp
chr11 12261110 12261110 1 + G A UCEC 12261107 + 12261087 12261127 41 GGCCAAGTTTGAGGAGAGCACTCGGAACCCCTCACTCATGA GGCCAAGTTTGAGGAGAGCACTCAGAACCCCTCACTCATGA < 41bp 0.703316359182345 0.468637725129504 0.14339343 0.06299275 prediction 0.406632718364691 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12261107 chr11:12261110 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_95919 0 0 1 0 1 MICAL2 chr11:12261132 5'GT 12261132 Upstream 23bp
chr11 123483529 123483529 1 + G A UCEC 123483526 + 123483506 123483546 41 GGGTTAGTGAAAACGTTCATCGAGAAGAACTTCTGGAGTGG GGGTTAGTGAAAACGTTCATCGAAAAGAACTTCTGGAGTGG < 41bp 0.821310639907459 0.617995417754714 0.7590625 0.40589368 prediction 0.40663044430549 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123483526 chr11:123483529 synonymous SNV . 0 24 hm5C_associated_SNPs_95921 0 0 1 0 1 GRAMD1B chr11:123483572 5'GT 123483572 Upstream 44bp
chr11 5010949 5010949 1 + C T SKCM 5010947 + 5010927 5010967 41 CCCAGGAGACACAAACACAGCTCCTGCAACAATTCCATCGG CCCAGGAGACACAAACACAGCTTCTGCAACAATTCCATCGG < 41bp 0.70331506608355 0.420679180060672 0.071810484 0.030645937 prediction 0.406630132167099 Functional Loss - MMP26 ENSG00000167346 CDS Human protein_coding chr11:5010947 chr11:5010949 synonymous SNV . 0 23 hm5C_associated_SNPs_95922 0 0 0 0 1 MMP26 chr11:5010878 3'AG 5010878 Downstream 72bp
chr5 150856257 150856257 1 + G T LUSC 150856253 + 150856233 150856273 41 TCTACATCAGCCTGGGGTGTCTGGGGTACCTGCAATTTGGA TCTACATCAGCCTGGGGTGTCTGGTGTACCTGCAATTTGGA < 41bp 0.736718263339714 0.533405483099784 0.8939713 0.49759322 prediction 0.406625560479861 Functional Loss - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150856253 chr5:150856257 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_95923 0 0 1 0 1 SLC36A1 chr5:150856317 5'GT 150856317 Upstream 61bp
chr14 62541932 62541932 1 + G T STAD 62541928 + 62541908 62541948 41 TGACCACATCCCTGCTCACTCACAGTCCCCATGTGAAAGAG TGACCACATCCCTGCTCACTCACATTCCCCATGTGAAAGAG < 41bp 0.703312685904694 0.489082378444995 0.24566928 0.11612043 prediction 0.406625371809387 Functional Loss - SYT16 ENSG00000139973 CDS Human protein_coding chr14:62541928 chr14:62541932 nonsynonymous SNV 0.056 1 25 hm5C_associated_SNPs_95924 0 0 0 0 1 SYT16 chr14:62541853 3'AG 62541853 Downstream 80bp
chr17 4497136 4497136 1 + G A STAD 4497133 + 4497113 4497153 41 ACAGAGAAGAATTCCTCTTTCACGTGGTCTGTGCCAAGCTC ACAGAGAAGAATTCCTCTTTCACATGGTCTGTGCCAAGCTC < 41bp 0.703308983066987 0.4463185467043 0.26303908 0.1563845 prediction 0.406617966133973 Functional Loss - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4497133 chr17:4497136 synonymous SNV . 0 24 hm5C_associated_SNPs_95925 0 0 0 0 2 SMTNL2 chr17:4497117 3'AG 4497117 Downstream 20bp
chr17 4497136 4497136 1 + G A STAD 4497133 + 4497113 4497153 41 ACAGAGAAGAATTCCTCTTTCACGTGGTCTGTGCCAAGCTC ACAGAGAAGAATTCCTCTTTCACATGGTCTGTGCCAAGCTC < 41bp 0.703308983066987 0.4463185467043 0.26303908 0.1563845 prediction 0.406617966133973 Functional Loss - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4497133 chr17:4497136 synonymous SNV . 0 24 hm5C_associated_SNPs_95925 0 0 0 0 2 SMTNL2 chr17:4497192 5'GT 4497192 Upstream 57bp
chr17 4497135 4497135 1 + C T STAD 4497133 + 4497113 4497153 41 ACAGAGAAGAATTCCTCTTTCACGTGGTCTGTGCCAAGCTC ACAGAGAAGAATTCCTCTTTCATGTGGTCTGTGCCAAGCTC < 41bp 0.703308983066987 0.439880564733478 0.26303908 0.30885053 prediction 0.406617966133973 Functional Loss - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4497133 chr17:4497135 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_95926 0 0 0 0 2 SMTNL2 chr17:4497117 3'AG 4497117 Downstream 19bp
chr17 4497135 4497135 1 + C T STAD 4497133 + 4497113 4497153 41 ACAGAGAAGAATTCCTCTTTCACGTGGTCTGTGCCAAGCTC ACAGAGAAGAATTCCTCTTTCATGTGGTCTGTGCCAAGCTC < 41bp 0.703308983066987 0.439880564733478 0.26303908 0.30885053 prediction 0.406617966133973 Functional Loss - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4497133 chr17:4497135 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_95926 0 0 0 0 2 SMTNL2 chr17:4497192 5'GT 4497192 Upstream 58bp
chr17 61613065 61613065 1 + G T SARC 61613061 + 61613041 61613081 41 GATTGGGCTATTGAAGACAGCGCGGCTGCTGCGGCTGGTGC GATTGGGCTATTGAAGACAGCGCGTCTGCTGCGGCTGGTGC < 41bp 0.726303012532715 0.52299549304283 0.29021353 0.09621808 prediction 0.406615038979771 Functional Loss - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61613061 chr17:61613065 synonymous SNV . 0 25 hm5C_associated_SNPs_95928 0 0 0 0 1 KCNH6 chr17:61613030 3'AG 61613030 Downstream 36bp
chr1 201969060 201969060 1 + C T COAD 201969057 + 201969037 201969077 41 GTACACCTGCTTGGAGGCTGCAACGGGGCGGGCTCTGCTGC GTACACCTGCTTGGAGGCTGCAATGGGGCGGGCTCTGCTGC < 41bp 0.743727709924654 0.540421158832261 0.44696113 0.43181768 prediction 0.406613102184786 Functional Loss - RNPEP ENSG00000176393 CDS Human protein_coding chr1:201969057 chr1:201969060 nonsynonymous SNV 0.760 3 24 hm5C_associated_SNPs_95929 0 0 1 0 2 RNPEP chr1:201969030 3'AG 201969030 Downstream 31bp
chr1 201969060 201969060 1 + C T COAD 201969057 + 201969037 201969077 41 GTACACCTGCTTGGAGGCTGCAACGGGGCGGGCTCTGCTGC GTACACCTGCTTGGAGGCTGCAATGGGGCGGGCTCTGCTGC < 41bp 0.743727709924654 0.540421158832261 0.44696113 0.43181768 prediction 0.406613102184786 Functional Loss - RNPEP ENSG00000176393 CDS Human protein_coding chr1:201969057 chr1:201969060 nonsynonymous SNV 0.760 3 24 hm5C_associated_SNPs_95929 0 0 1 0 2 RNPEP chr1:201969143 5'GT 201969143 Upstream 84bp
chr6 14131846 14131846 1 + C T rs200908934 14131843 + 14131823 14131863 41 AAGGGGCAAAATGGTTCTTTCGACGCCCCCAATGAAAGGCC AAGGGGCAAAATGGTTCTTTCGATGCCCCCAATGAAAGGCC < 41bp 0.749902891752333 0.54660019446231 0.41979474 0.14843777 prediction 0.406605394580047 Functional Loss - CD83 ENSG00000112149 CDS Human protein_coding chr6:14131843 chr6:14131846 synonymous SNV . 0 24 hm5C_associated_SNPs_95932 0 0 0 0 1 CD83 chr6:14131751 3'AG 14131751 Downstream 96bp
chr12 54423467 54423467 1 + C T CESC 54423465 + 54423445 54423485 41 GCTACGGAGCGGACCGGAGGCGCGGCCGCCAGATCTACTCG GCTACGGAGCGGACCGGAGGCGTGGCCGCCAGATCTACTCG < 41bp 0.841170913957127 0.63786893465685 0.7989829 0.8581748 prediction 0.406603958600555 Functional Loss - HOXC6 ENSG00000197757 CDS Human protein_coding chr12:54423465 chr12:54423467 synonymous SNV . 0 23 hm5C_associated_SNPs_95933 0 0 0 0 1 HOXC6 chr12:54423439 3'AG 54423439 Downstream 29bp
chr11 55036813 55036813 1 + G T HNSC 55036811 + 55036791 55036831 41 AGGGACAGGCTCAACCAATTCTGAGGTAAGTCTCCACCCAC AGGGACAGGCTCAACCAATTCTTAGGTAAGTCTCCACCCAC < 41bp 0.909438076760939 0.706138944303715 0.3744942 0.18227616 prediction 0.40659826491445 Functional Loss - TRIM48 ENSG00000150244 CDS Human protein_coding chr11:55036811 chr11:55036813 stoploss 0.154 0 23 hm5C_associated_SNPs_95935 0 0 0 0 2 TRIM48 chr11:55036718 3'AG 55036718 Downstream 96bp
chr11 55036813 55036813 1 + G T HNSC 55036811 + 55036791 55036831 41 AGGGACAGGCTCAACCAATTCTGAGGTAAGTCTCCACCCAC AGGGACAGGCTCAACCAATTCTTAGGTAAGTCTCCACCCAC < 41bp 0.909438076760939 0.706138944303715 0.3744942 0.18227616 prediction 0.40659826491445 Functional Loss - TRIM48 ENSG00000150244 CDS Human protein_coding chr11:55036811 chr11:55036813 stoploss 0.154 0 23 hm5C_associated_SNPs_95935 0 0 0 0 2 TRIM48 chr11:55036815 5'GT 55036815 Upstream 3bp
chr16 30953566 30953566 1 + G T UCEC 30953563 + 30953543 30953583 41 CTCAGCTGGACAGGTGTCTCCAAGAAGCAGCTCATGTGGCT CTCAGCTGGACAGGTGTCTCCAATAAGCAGCTCATGTGGCT < 41bp 0.703297903625288 0.318615263920525 0.8242402 0.11476439 prediction 0.406595807250577 Functional Loss - FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30953563 chr16:30953566 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_95936 0 0 1 0 1 FBXL19 chr16:30953600 5'GT 30953600 Upstream 35bp
chrX 149839967 149839967 1 + C T SKCM 149839964 + 149839944 149839984 41 TACGCGACGAATACATAAAGCGGCTTGAGGAACTGCAGCTC TACGCGACGAATACATAAAGCGGTTTGAGGAACTGCAGCTC < 41bp 0.732638037677982 0.529342909467533 0.49476135 0.4254991 prediction 0.406590256420898 Functional Loss - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149839964 chrX:149839967 nonsynonymous SNV 0.548 3 24 hm5C_associated_SNPs_95940 0 0 0 0 1 MTM1 chrX:149839901 3'AG 149839901 Downstream 67bp
chr7 34118765 34118765 1 + G A LUAD 34118762 + 34118742 34118782 41 CGCCACACTTCCACATCGACCTGGATGGCTACCTCTTGAAA CGCCACACTTCCACATCGACCTGAATGGCTACCTCTTGAAA < 41bp 0.82738207732077 0.624088125739788 0.32623577 0.18691 prediction 0.406587903161964 Functional Loss - BMPER ENSG00000164619 CDS Human protein_coding chr7:34118762 chr7:34118765 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_95942 0 0 0 0 1 BMPER chr7:34118798 5'GT 34118798 Upstream 34bp
chr1 151373292 151373292 1 + G A UCEC 151373289 + 151373269 151373309 41 TAGCCTATGAAGCCCCTTCGCTGGCCACTGGTTATGGTGCA TAGCCTATGAAGCCCCTTCGCTGACCACTGGTTATGGTGCA < 41bp 0.799740768912447 0.596447981922506 0.16094762 0.091739595 prediction 0.406585573979882 Functional Loss - PSMB4 ENSG00000159377 CDS Human protein_coding chr1:151373289 chr1:151373292 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_95944 0 0 1 0 2 PSMB4 chr1:151373240 3'AG 151373240 Downstream 53bp
chr1 151373292 151373292 1 + G A UCEC 151373289 + 151373269 151373309 41 TAGCCTATGAAGCCCCTTCGCTGGCCACTGGTTATGGTGCA TAGCCTATGAAGCCCCTTCGCTGACCACTGGTTATGGTGCA < 41bp 0.799740768912447 0.596447981922506 0.16094762 0.091739595 prediction 0.406585573979882 Functional Loss - PSMB4 ENSG00000159377 CDS Human protein_coding chr1:151373289 chr1:151373292 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_95944 0 0 1 0 2 PSMB4 chr1:151373321 5'GT 151373321 Upstream 30bp
chr1 40627211 40627211 1 + C T SKCM 40627209 + 40627189 40627229 41 GTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCT GTATCTCCAGCGCCGGGAGCCTTGGGACTGCGGCCGTGTCT < 41bp 0.830527765750542 0.627237997578051 0.51926804 0.5170931 prediction 0.406579536344982 Functional Loss - RLF ENSG00000117000 CDS Human protein_coding chr1:40627209 chr1:40627211 nonsynonymous SNV 0.428 0 23 hm5C_associated_SNPs_95947 0 0 1 0 1 RLF chr1:40627308 5'GT 40627308 Upstream 98bp
chr1 160100252 160100252 1 + G T LUAD 160100248 + 160100228 160100268 41 TCTGCCATCTGGAAAGTTTCCTCGGGGCTTCAAATTCGACA TCTGCCATCTGGAAAGTTTCCTCGTGGCTTCAAATTCGACA < 41bp 0.703287385718764 0.499987314261992 0.12169975 0.05555007 prediction 0.406574771437528 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160100248 chr1:160100252 synonymous SNV . 0 25 hm5C_associated_SNPs_95948 0 0 0 0 1 ATP1A2 chr1:160100212 3'AG 160100212 Downstream 41bp
chr19 15784426 15784426 1 + G A UCEC 15784423 + 15784403 15784443 41 CTGCTGCTGGTTGTGGGCTCCTGGCTACTCGCCCGCATCCT CTGCTGCTGGTTGTGGGCTCCTGACTACTCGCCCGCATCCT < 41bp 0.703283980533681 0.44528155338742 0.5305486 0.30025256 prediction 0.406567961067362 Functional Loss - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15784423 chr19:15784426 stopgain 0.014 0 24 hm5C_associated_SNPs_95949 0 0 1 0 1 CYP4F12 chr19:15784339 3'AG 15784339 Downstream 88bp
chr14 65209083 65209083 1 + C T UCEC 65209080 + 65209060 65209100 41 CAGTGATGGCCAGGCCACCACTGCAGTGGGAAAAGGTGGCC CAGTGATGGCCAGGCCACCACTGTAGTGGGAAAAGGTGGCC < 41bp 0.761039329973582 0.557756084575581 0.38017136 0.23234907 prediction 0.406566490796003 Functional Loss - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65209080 chr14:65209083 stopgain 0.004 0 24 hm5C_associated_SNPs_95950 0 0 1 0 1 PLEKHG3 chr14:65209173 5'GT 65209173 Upstream 91bp
chr2 103310913 103310913 1 + A T CESC 103310911 + 103310891 103310931 41 CTGGTGGAGTTTCTTGATGTCAAGAGGTCCAATAAGAAACA CTGGTGGAGTTTCTTGATGTCATGAGGTCCAATAAGAAACA < 41bp 0.703280891929359 0.488532923506252 0.26257187 0.14838296 prediction 0.406561783858719 Functional Loss - SLC9A2 ENSG00000115616 CDS Human protein_coding chr2:103310911 chr2:103310913 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_95952 0 0 0 0 2 SLC9A2 chr2:103310873 3'AG 103310873 Downstream 41bp
chr2 103310913 103310913 1 + A T CESC 103310911 + 103310891 103310931 41 CTGGTGGAGTTTCTTGATGTCAAGAGGTCCAATAAGAAACA CTGGTGGAGTTTCTTGATGTCATGAGGTCCAATAAGAAACA < 41bp 0.703280891929359 0.488532923506252 0.26257187 0.14838296 prediction 0.406561783858719 Functional Loss - SLC9A2 ENSG00000115616 CDS Human protein_coding chr2:103310911 chr2:103310913 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_95952 0 0 0 0 2 SLC9A2 chr2:103310962 5'GT 103310962 Upstream 50bp
chr3 52548428 52548428 1 + C T SKCM 52548425 + 52548405 52548445 41 GTGGTCCTGGGGGAGGCCCTCTCCATGGAAACCCTGCGGAA GTGGTCCTGGGGGAGGCCCTCTCTATGGAAACCCTGCGGAA < 41bp 0.73587257248224 0.532591745693789 0.9577075 0.9265425 prediction 0.406561653576901 Functional Loss - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52548425 chr3:52548428 synonymous SNV . 0 24 hm5C_associated_SNPs_95953 0 0 0 0 2 STAB1 chr3:52548381 3'AG 52548381 Downstream 48bp
chr3 52548428 52548428 1 + C T SKCM 52548425 + 52548405 52548445 41 GTGGTCCTGGGGGAGGCCCTCTCCATGGAAACCCTGCGGAA GTGGTCCTGGGGGAGGCCCTCTCTATGGAAACCCTGCGGAA < 41bp 0.73587257248224 0.532591745693789 0.9577075 0.9265425 prediction 0.406561653576901 Functional Loss - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52548425 chr3:52548428 synonymous SNV . 0 24 hm5C_associated_SNPs_95953 0 0 0 0 2 STAB1 chr3:52548512 5'GT 52548512 Upstream 85bp
chr22 35819296 35819296 1 + G A UCEC 35819293 + 35819273 35819313 41 GCCGCTTTGCCATTGGCTCCCAGGTGTCTGAGCACAGCATC GCCGCTTTGCCATTGGCTCCCAGATGTCTGAGCACAGCATC < 41bp 0.800101346775625 0.596822286764706 0.9174298 0.8744043 prediction 0.406558120021839 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35819293 chr22:35819296 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_95955 0 0 1 0 2 MCM5 chr22:35819207 3'AG 35819207 Downstream 90bp
chr22 35819296 35819296 1 + G A UCEC 35819293 + 35819273 35819313 41 GCCGCTTTGCCATTGGCTCCCAGGTGTCTGAGCACAGCATC GCCGCTTTGCCATTGGCTCCCAGATGTCTGAGCACAGCATC < 41bp 0.800101346775625 0.596822286764706 0.9174298 0.8744043 prediction 0.406558120021839 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35819293 chr22:35819296 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_95955 0 0 1 0 2 MCM5 chr22:35819334 5'GT 35819334 Upstream 39bp
chr20 57896166 57896166 1 + C T LUSC 57896163 + 57896143 57896183 41 CAGGGAATCTGCAGCTCTCACATCGGCCACACTTGCGCTGC CAGGGAATCTGCAGCTCTCACATTGGCCACACTTGCGCTGC < 41bp 0.740923896691573 0.537645079659079 0.684424 0.48239952 prediction 0.406557634064989 Functional Loss - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57896163 chr20:57896166 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_95956 0 0 0 0 2 EDN3 chr20:57896072 3'AG 57896072 Downstream 95bp
chr20 57896166 57896166 1 + C T LUSC 57896163 + 57896143 57896183 41 CAGGGAATCTGCAGCTCTCACATCGGCCACACTTGCGCTGC CAGGGAATCTGCAGCTCTCACATTGGCCACACTTGCGCTGC < 41bp 0.740923896691573 0.537645079659079 0.684424 0.48239952 prediction 0.406557634064989 Functional Loss - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57896163 chr20:57896166 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_95956 0 0 0 0 2 EDN3 chr20:57896248 5'GT 57896248 Upstream 83bp
chr12 49217238 49217238 1 + G A UCEC 49217235 + 49217215 49217255 41 AGAGCCAGGCTCAGCAGCAGCTCGAAAGGGCCAAGGTATAC AGAGCCAGGCTCAGCAGCAGCTCAAAAGGGCCAAGGTATAC < 41bp 0.773394819900878 0.570117682391776 0.45820764 0.70948935 prediction 0.406554275018204 Functional Loss - CACNB3 ENSG00000167535 CDS Human protein_coding chr12:49217235 chr12:49217238 nonsynonymous SNV 0.988 2 24 hm5C_associated_SNPs_95958 0 0 0 0 1 CACNB3 chr12:49217249 5'GT 49217249 Upstream 12bp
chr8 95680397 95680397 1 + G C BLCA 95680393 + 95680373 95680413 41 CTTTGCCTGTGAGGAATATGCACAGAATGCGTTGAGGAAGC CTTTGCCTGTGAGGAATATGCACACAATGCGTTGAGGAAGC < 41bp 0.703275610305715 0.412858886108859 0.12091315 0.031474292 prediction 0.40655122061143 Functional Loss - ESRP1 ENSG00000104413 CDS Human protein_coding chr8:95680393 chr8:95680397 nonsynonymous SNV 0.951 4 25 hm5C_associated_SNPs_95960 0 0 0 0 1 ESRP1 chr8:95680478 5'GT 95680478 Upstream 82bp
chr5 424025 424025 1 + C T CESC 424023 + 424003 424043 41 ACAGGCACGCCCACCGAGTACTCGGCCTTCCTGACCCGCTG ACAGGCACGCCCACCGAGTACTTGGCCTTCCTGACCCGCTG < 41bp 0.858276356665474 0.655001021423644 0.6909902 0.21434376 prediction 0.406550670483661 Functional Loss - AHRR ENSG00000063438 CDS Human protein_coding chr5:424023 chr5:424025 nonsynonymous SNV 0.012 2 23 hm5C_associated_SNPs_95961 0 0 0 0 2 AHRR chr5:423956 3'AG 423956 Downstream 70bp
chr5 424025 424025 1 + C T CESC 424023 + 424003 424043 41 ACAGGCACGCCCACCGAGTACTCGGCCTTCCTGACCCGCTG ACAGGCACGCCCACCGAGTACTTGGCCTTCCTGACCCGCTG < 41bp 0.858276356665474 0.655001021423644 0.6909902 0.21434376 prediction 0.406550670483661 Functional Loss - AHRR ENSG00000063438 CDS Human protein_coding chr5:424023 chr5:424025 nonsynonymous SNV 0.012 2 23 hm5C_associated_SNPs_95961 0 0 0 0 2 AHRR chr5:424092 5'GT 424092 Upstream 68bp
chr7 120782129 120782129 1 + C T SKCM 120782126 + 120782106 120782146 41 ACTCTGATCACGTACAAACTCACCATCTATAGAGAAGACCG ACTCTGATCACGTACAAACTCACTATCTATAGAGAAGACCG < 41bp 0.796313892557178 0.593041683859846 0.12911928 0.20756137 prediction 0.406544417394664 Functional Loss - CPED1 ENSG00000106034 CDS Human protein_coding chr7:120782126 chr7:120782129 synonymous SNV . 0 24 hm5C_associated_SNPs_95962 0 0 0 0 1 CPED1 chr7:120782195 5'GT 120782195 Upstream 67bp
chr3 9959647 9959647 1 + T C SKCM 9959646 + 9959626 9959666 41 GCCTGGGGACATCGTGCCTGCTCCGGGCCCCGTGCTGGCGC GCCTGGGGACATCGTGCCTGCCCCGGGCCCCGTGCTGGCGC < 41bp 0.823291546623724 0.620025082375031 0.2310488 0.116910994 prediction 0.406532928497385 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9959646 chr3:9959647 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_95966 0 0 1 0 3 IL17RC chr3:9959548 3'AG 9959548 Downstream 100bp
chr3 9959647 9959647 1 + T C SKCM 9959646 + 9959626 9959666 41 GCCTGGGGACATCGTGCCTGCTCCGGGCCCCGTGCTGGCGC GCCTGGGGACATCGTGCCTGCCCCGGGCCCCGTGCTGGCGC < 41bp 0.823291546623724 0.620025082375031 0.2310488 0.116910994 prediction 0.406532928497385 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9959646 chr3:9959647 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_95966 0 0 1 0 3 IL17RC chr3:9959607 3'AG 9959607 Downstream 41bp
chr3 9959647 9959647 1 + T C SKCM 9959646 + 9959626 9959666 41 GCCTGGGGACATCGTGCCTGCTCCGGGCCCCGTGCTGGCGC GCCTGGGGACATCGTGCCTGCCCCGGGCCCCGTGCTGGCGC < 41bp 0.823291546623724 0.620025082375031 0.2310488 0.116910994 prediction 0.406532928497385 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9959646 chr3:9959647 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_95966 0 0 1 0 3 IL17RC chr3:9959611 3'AG 9959611 Downstream 37bp
chrX 150828287 150828287 1 + G A SKCM 150828284 + 150828264 150828304 41 ATTGCTCCAGTACAGTTTTCCTGGATACTATGCCTGAATCT ATTGCTCCAGTACAGTTTTCCTGAATACTATGCCTGAATCT < 41bp 0.703264729098481 0.455002845595523 0.34530467 0.15131137 prediction 0.406529458196962 Functional Loss - PASD1 ENSG00000166049 CDS Human protein_coding chrX:150828284 chrX:150828287 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_95967 0 0 0 0 1 PASD1 chrX:150828308 5'GT 150828308 Upstream 22bp
chr12 125621367 125621367 1 + C T OV 125621364 + 125621344 125621384 41 CGCCATCCGCATGGGCTTGTCTGCGCGACACGTGCCCAGCC CGCCATCCGCATGGGCTTGTCTGTGCGACACGTGCCCAGCC < 41bp 0.777234767456142 0.573970349152522 0.5053317 0.33113724 prediction 0.40652883660724 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125621364 chr12:125621367 nonsynonymous SNV 0.949 2 24 hm5C_associated_SNPs_95968 0 0 0 1 1 AACS chr12:125621410 5'GT 125621410 Upstream 44bp
chr17 32614693 32614693 1 + C T LGG 32614690 + 32614670 32614710 41 GAAGTATCTGGACCAAAAATCTCCAACTCCAAAGCCATAAA GAAGTATCTGGACCAAAAATCTCTAACTCCAAAGCCATAAA < 41bp 0.771807051011106 0.568544491554071 0.9547576 0.7969747 prediction 0.40652511891407 Functional Loss - CCL11 ENSG00000172156 CDS Human protein_coding chr17:32614690 chr17:32614693 nonsynonymous SNV 0.012 1 24 hm5C_associated_SNPs_95971 0 0 0 0 1 CCL11 chr17:32614604 3'AG 32614604 Downstream 90bp
chr6 39025309 39025309 1 + G A rs10305444 39025306 + 39025286 39025326 41 TGGCCAGATGGGGAGCCAGGCTCGTTCGTGAATGTCAGCTG TGGCCAGATGGGGAGCCAGGCTCATTCGTGAATGTCAGCTG < 41bp 0.820997047489963 0.617737189019944 0.35249135 0.30064622 prediction 0.40651971694004 Functional Loss - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39025306 chr6:39025309 synonymous SNV . 0 24 hm5C_associated_SNPs_95972 0 0 0 0 2 GLP1R chr6:39025248 3'AG 39025248 Downstream 62bp
chr6 39025309 39025309 1 + G A rs10305444 39025306 + 39025286 39025326 41 TGGCCAGATGGGGAGCCAGGCTCGTTCGTGAATGTCAGCTG TGGCCAGATGGGGAGCCAGGCTCATTCGTGAATGTCAGCTG < 41bp 0.820997047489963 0.617737189019944 0.35249135 0.30064622 prediction 0.40651971694004 Functional Loss - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39025306 chr6:39025309 synonymous SNV . 0 24 hm5C_associated_SNPs_95972 0 0 0 0 2 GLP1R chr6:39025355 5'GT 39025355 Upstream 47bp
chr1 1118394 1118394 1 + C T SKCM 1118391 + 1118371 1118411 41 CGACCCCATCCACCACAAGACGCCGTTCCGGGGGCCTCAGG CGACCCCATCCACCACAAGACGCTGTTCCGGGGGCCTCAGG < 41bp 0.723514256176612 0.520256743629081 0.10817596 0.31940523 prediction 0.406515025095062 Functional Loss - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1118391 chr1:1118394 nonsynonymous SNV 0.024 0 24 hm5C_associated_SNPs_95974 0 0 0 0 1 TTLL10 chr1:1118427 5'GT 1118427 Upstream 34bp
chr11 61545288 61545288 1 + C T UCEC 61545286 + 61545266 61545306 41 AAGCCCGAGTTCGCCGCCAGCGCGGGCATCGAGGCCACCGC AAGCCCGAGTTCGCCGCCAGCGTGGGCATCGAGGCCACCGC < 41bp 0.845425550013645 0.6421765393133 0.90309775 0.9047583 prediction 0.406498021400689 Functional Loss - MYRF ENSG00000124920 CDS Human protein_coding chr11:61545286 chr11:61545288 nonsynonymous SNV 0.670 1 23 hm5C_associated_SNPs_95981 0 0 1 0 2 MYRF chr11:61545206 3'AG 61545206 Downstream 83bp
chr11 61545288 61545288 1 + C T UCEC 61545286 + 61545266 61545306 41 AAGCCCGAGTTCGCCGCCAGCGCGGGCATCGAGGCCACCGC AAGCCCGAGTTCGCCGCCAGCGTGGGCATCGAGGCCACCGC < 41bp 0.845425550013645 0.6421765393133 0.90309775 0.9047583 prediction 0.406498021400689 Functional Loss - MYRF ENSG00000124920 CDS Human protein_coding chr11:61545286 chr11:61545288 nonsynonymous SNV 0.670 1 23 hm5C_associated_SNPs_95981 0 0 1 0 2 MYRF chr11:61545317 5'GT 61545317 Upstream 30bp
chr13 31835157 31835157 1 + T C THCA 31835156 + 31835136 31835176 41 TTATGCCTTTTCCGAGAATCCTACAGTTTTTAAGTATCCAG TTATGCCTTTTCCGAGAATCCCACAGTTTTTAAGTATCCAG < 41bp 0.703244891693952 0.433211775913391 0.4006664 0.077498496 prediction 0.406489783387905 Functional Loss - B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31835156 chr13:31835157 synonymous SNV . 0 22 hm5C_associated_SNPs_95985 0 0 1 0 2 B3GLCT chr13:31835083 3'AG 31835083 Downstream 75bp
chr13 31835157 31835157 1 + T C THCA 31835156 + 31835136 31835176 41 TTATGCCTTTTCCGAGAATCCTACAGTTTTTAAGTATCCAG TTATGCCTTTTCCGAGAATCCCACAGTTTTTAAGTATCCAG < 41bp 0.703244891693952 0.433211775913391 0.4006664 0.077498496 prediction 0.406489783387905 Functional Loss - B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31835156 chr13:31835157 synonymous SNV . 0 22 hm5C_associated_SNPs_95985 0 0 1 0 2 B3GLCT chr13:31835219 5'GT 31835219 Upstream 63bp
chr22 50926341 50926341 1 + C T OV 50926338 + 50926318 50926358 41 GCCCAGTTTGGGGGCTTCTCCTACAAGAAAATGACAGTCAT GCCCAGTTTGGGGGCTTCTCCTATAAGAAAATGACAGTCAT < 41bp 0.779875586782432 0.576632272019444 0.90493345 0.43918496 prediction 0.406486629525977 Functional Loss - MIOX ENSG00000100253 CDS Human protein_coding chr22:50926338 chr22:50926341 synonymous SNV . 0 24 hm5C_associated_SNPs_95986 0 0 0 0 1 MIOX chr22:50926315 3'AG 50926315 Downstream 27bp
chr6 159086550 159086550 1 + C T UCEC 159086547 + 159086527 159086567 41 GGGTTCCTGCTGCACCGGGGCGCCGTGTGCCGGGGCTGCAG GGGTTCCTGCTGCACCGGGGCGCTGTGTGCCGGGGCTGCAG < 41bp 0.767904749432126 0.564661570884165 0.40388224 0.27528787 prediction 0.406486357095922 Functional Loss - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159086547 chr6:159086550 synonymous SNV . 0 24 hm5C_associated_SNPs_95987 0 0 0 0 1 SYTL3 chr6:159086645 5'GT 159086645 Upstream 96bp
chr13 31848657 31848657 1 + C T rs35019745 31848654 + 31848634 31848674 41 GTCTCGTGGCAGATTGCCCTCTACATCTGGGACAAAGGCGG GTCTCGTGGCAGATTGCCCTCTATATCTGGGACAAAGGCGG < 41bp 0.780941037200014 0.577698761759029 0.30846846 0.21084166 prediction 0.406484550881971 Functional Loss - B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31848654 chr13:31848657 synonymous SNV . 0 24 hm5C_associated_SNPs_95989 1 0 1 0 1 B3GLCT chr13:31848646 3'AG 31848646 Downstream 12bp
chr1 897301 897301 1 + G T KIRC 897299 + 897279 897319 41 AGCTCGACCCCTCCAACTGCCTGGGTATCCGGGGCTTTGCC AGCTCGACCCCTCCAACTGCCTTGGTATCCGGGGCTTTGCC < 41bp 0.703237123156763 0.341519818814519 0.65396893 0.21613717 prediction 0.406474246313526 Functional Loss - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:897299 chr1:897301 synonymous SNV . 0 23 hm5C_associated_SNPs_95993 0 0 1 0 1 KLHL17 chr1:897206 3'AG 897206 Downstream 96bp
chr1 897302 897302 1 + G T KIRC 897299 + 897279 897319 41 AGCTCGACCCCTCCAACTGCCTGGGTATCCGGGGCTTTGCC AGCTCGACCCCTCCAACTGCCTGTGTATCCGGGGCTTTGCC < 41bp 0.703237123156763 0.297673951591503 0.65396893 0.050836444 prediction 0.406474246313526 Functional Loss - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:897299 chr1:897302 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_95994 0 0 1 0 1 KLHL17 chr1:897206 3'AG 897206 Downstream 97bp
chr3 8787241 8787241 1 + T C rs149287333 8787240 + 8787220 8787260 41 TGAAGACGTGATCGCAGAGCCTGTGGGCACCTACAGCTTTG TGAAGACGTGATCGCAGAGCCCGTGGGCACCTACAGCTTTG < 41bp 0.755176644621049 0.551944018359505 0.020768106 0.09155661 prediction 0.406465252523087 Functional Loss - CAV3 ENSG00000182533 CDS Human protein_coding chr3:8787240 chr3:8787241 synonymous SNV . 0 22 hm5C_associated_SNPs_95997 1 0 0 0 1 CAV3 chr3:8787212 3'AG 8787212 Downstream 30bp
chr11 46725907 46725907 1 + T C COAD 46725906 + 46725886 46725926 41 CCATCCTTGCCTTGCAGATCCTGGTTCCCAGTCACCCTCTG CCATCCTTGCCTTGCAGATCCCGGTTCCCAGTCACCCTCTG < 41bp 0.703232422274321 0.482970192179384 0.17900696 0.23878622 prediction 0.406464844548642 Functional Loss - ZNF408 ENSG00000175213 CDS Human protein_coding chr11:46725906 chr11:46725907 synonymous SNV . 0 22 hm5C_associated_SNPs_95998 0 0 1 0 1 ZNF408 chr11:46725903 3'AG 46725903 Downstream 5bp
chr9 35606965 35606965 1 + C T GBM 35606963 + 35606943 35606983 41 ACTCCAAAGGTGTATTTCACCGCGACCTCACATCCAAGGTA ACTCCAAAGGTGTATTTCACCGTGACCTCACATCCAAGGTA < 41bp 0.861556834884865 0.658326469285862 0.4548946 0.32684267 prediction 0.406460731198008 Functional Loss - TESK1 ENSG00000107140 CDS Human protein_coding chr9:35606963 chr9:35606965 synonymous SNV . 0 23 hm5C_associated_SNPs_95999 0 0 1 0 1 TESK1 chr9:35606980 5'GT 35606980 Upstream 16bp
chrX 69521843 69521843 1 + G T SARC 69521839 + 69521819 69521859 41 AACTCTAGGACTGTGGCCTCCACGGCTATGAACTCCCAGTC AACTCTAGGACTGTGGCCTCCACGTCTATGAACTCCCAGTC < 41bp 0.734662972885692 0.531432724297992 0.26424697 0.14454156 prediction 0.4064604971754 Functional Loss - KIF4A ENSG00000090889 CDS Human protein_coding chrX:69521839 chrX:69521843 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_96000 0 0 1 0 2 KIF4A chrX:69521750 3'AG 69521750 Downstream 94bp
chrX 69521843 69521843 1 + G T SARC 69521839 + 69521819 69521859 41 AACTCTAGGACTGTGGCCTCCACGGCTATGAACTCCCAGTC AACTCTAGGACTGTGGCCTCCACGTCTATGAACTCCCAGTC < 41bp 0.734662972885692 0.531432724297992 0.26424697 0.14454156 prediction 0.4064604971754 Functional Loss - KIF4A ENSG00000090889 CDS Human protein_coding chrX:69521839 chrX:69521843 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_96000 0 0 1 0 2 KIF4A chrX:69521916 5'GT 69521916 Upstream 74bp
chr19 758679 758679 1 + C T SKCM 758676 + 758656 758696 41 CCCAGAGGTCTTCTCCCCAACGCCAGATGAGAACTCTGACC CCCAGAGGTCTTCTCCCCAACGCTAGATGAGAACTCTGACC < 41bp 0.728098867194532 0.524871149442518 0.5560591 0.14835912 prediction 0.406455435504027 Functional Loss - MISP ENSG00000099812 CDS Human protein_coding chr19:758676 chr19:758679 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_96002 0 0 0 0 1 MISP chr19:758726 5'GT 758726 Upstream 48bp
chr12 6427985 6427985 1 + G A ESCA 6427982 + 6427962 6428002 41 CAGCGCAAGGCGGACAAAGCCAAGGTCATCCGACCCCCTCT CAGCGCAAGGCGGACAAAGCCAAAGTCATCCGACCCCCTCT < 41bp 0.835474290701317 0.632247952255268 0.8320668 0.21261087 prediction 0.406452676892096 Functional Loss - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6427982 chr12:6427985 synonymous SNV . 0 24 hm5C_associated_SNPs_96004 0 0 0 0 2 PLEKHG6 chr12:6427911 3'AG 6427911 Downstream 75bp
chr12 6427985 6427985 1 + G A ESCA 6427982 + 6427962 6428002 41 CAGCGCAAGGCGGACAAAGCCAAGGTCATCCGACCCCCTCT CAGCGCAAGGCGGACAAAGCCAAAGTCATCCGACCCCCTCT < 41bp 0.835474290701317 0.632247952255268 0.8320668 0.21261087 prediction 0.406452676892096 Functional Loss - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6427982 chr12:6427985 synonymous SNV . 0 24 hm5C_associated_SNPs_96004 0 0 0 0 2 PLEKHG6 chr12:6428043 5'GT 6428043 Upstream 59bp
chr10 60560022 60560022 1 + C T UCEC 60560020 + 60560000 60560040 41 AAAAAGTGCTGAGTGCAAATCACGGGGATCCGTCCATCCAG AAAAAGTGCTGAGTGCAAATCATGGGGATCCGTCCATCCAG < 41bp 0.865827566331041 0.662607639466012 0.9132375 0.8824909 prediction 0.406439853730058 Functional Loss - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60560020 chr10:60560022 synonymous SNV . 0 23 hm5C_associated_SNPs_96007 0 0 1 0 2 BICC1 chr10:60559954 3'AG 60559954 Downstream 69bp
chr10 60560022 60560022 1 + C T UCEC 60560020 + 60560000 60560040 41 AAAAAGTGCTGAGTGCAAATCACGGGGATCCGTCCATCCAG AAAAAGTGCTGAGTGCAAATCATGGGGATCCGTCCATCCAG < 41bp 0.865827566331041 0.662607639466012 0.9132375 0.8824909 prediction 0.406439853730058 Functional Loss - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60560020 chr10:60560022 synonymous SNV . 0 23 hm5C_associated_SNPs_96007 0 0 1 0 2 BICC1 chr10:60560086 5'GT 60560086 Upstream 65bp
chr20 31828091 31828091 1 + G T UCEC 31828089 + 31828069 31828109 41 GGCTGTGAAGCTGGACATCACTGCAGAAATCTTAGCTGTGA GGCTGTGAAGCTGGACATCACTTCAGAAATCTTAGCTGTGA < 41bp 0.91346460668237 0.710246890727603 0.37387985 0.1465404 prediction 0.406435431909534 Functional Loss - BPIFA1 ENSG00000198183 CDS Human protein_coding chr20:31828089 chr20:31828091 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_96009 0 0 0 0 1 BPIFA1 chr20:31828039 3'AG 31828039 Downstream 53bp
chr3 156009837 156009837 1 + G A STAD 156009834 + 156009814 156009854 41 TTCCGCACGGTCGCTATCATCGCGCGCAGCCTGGGGACGTT TTCCGCACGGTCGCTATCATCGCACGCAGCCTGGGGACGTT < 41bp 0.703216216638839 0.466267479955362 0.48451656 0.2626722 prediction 0.406432433277677 Functional Loss - KCNAB1 ENSG00000169282 CDS Human protein_coding chr3:156009834 chr3:156009837 synonymous SNV . 0 24 hm5C_associated_SNPs_96011 0 0 0 0 1 KCNAB1 chr3:156009917 5'GT 156009917 Upstream 81bp
chr20 1145118 1145118 1 + C T COAD 1145116 + 1145096 1145136 41 GACCCATTGGGACCAGCCCACCCGGGTACGTAGTCACTCAG GACCCATTGGGACCAGCCCACCTGGGTACGTAGTCACTCAG < 41bp 0.703214776517058 0.430709676786744 0.33958328 0.30070508 prediction 0.406429553034116 Functional Loss - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1145116 chr20:1145118 synonymous SNV . 0 23 hm5C_associated_SNPs_96012 0 0 1 0 1 PSMF1 chr20:1145120 5'GT 1145120 Upstream 3bp
chr17 73819525 73819525 1 + C T rs8078208 73819522 + 73819502 73819542 41 CCCCAGGCCCTGCCCGCCTTCTCCGACCTGGAGGCGCTCTC CCCCAGGCCCTGCCCGCCTTCTCTGACCTGGAGGCGCTCTC < 41bp 0.793686970314068 0.590472506755036 0.8534247 0.51260984 prediction 0.406428927118064 Functional Loss - UNK ENSG00000132478 CDS Human protein_coding chr17:73819522 chr17:73819525 synonymous SNV . 0 24 hm5C_associated_SNPs_96013 0 0 1 0 1 UNK chr17:73819603 5'GT 73819603 Upstream 79bp
chr1 158815759 158815759 1 + G A CESC 158815756 + 158815736 158815776 41 TCAACTTTACAAGCAAGCATCTGGAACAATGGTGTATGGGT TCAACTTTACAAGCAAGCATCTGAAACAATGGTGTATGGGT < 41bp 0.790494665544759 0.587281061293699 0.18822995 0.13684353 prediction 0.40642720850212 Functional Loss - MNDA ENSG00000163563 CDS Human protein_coding chr1:158815756 chr1:158815759 nonsynonymous SNV 0.507 3 24 hm5C_associated_SNPs_96014 0 0 0 0 1 MNDA chr1:158815793 5'GT 158815793 Upstream 35bp
chr10 85955281 85955281 1 + C T UCEC 85955278 + 85955258 85955298 41 AACTTCGCCCCGCACTTCTTCGACAACGGGGTCGGCAGCAC AACTTCGCCCCGCACTTCTTCGATAACGGGGTCGGCAGCAC < 41bp 0.776291648882807 0.573078187365658 0.20714244 0.1873515 prediction 0.406426923034299 Functional Loss - CDHR1 ENSG00000148600 CDS Human protein_coding chr10:85955278 chr10:85955281 synonymous SNV . 0 24 hm5C_associated_SNPs_96015 0 0 0 0 2 CDHR1 chr10:85955250 3'AG 85955250 Downstream 32bp
chr10 85955281 85955281 1 + C T UCEC 85955278 + 85955258 85955298 41 AACTTCGCCCCGCACTTCTTCGACAACGGGGTCGGCAGCAC AACTTCGCCCCGCACTTCTTCGATAACGGGGTCGGCAGCAC < 41bp 0.776291648882807 0.573078187365658 0.20714244 0.1873515 prediction 0.406426923034299 Functional Loss - CDHR1 ENSG00000148600 CDS Human protein_coding chr10:85955278 chr10:85955281 synonymous SNV . 0 24 hm5C_associated_SNPs_96015 0 0 0 0 2 CDHR1 chr10:85955345 5'GT 85955345 Upstream 65bp
chr11 12229617 12229617 1 + G A BRCA 12229614 + 12229594 12229634 41 TATTCAAGGTGGCCCTGATGCTGGGAGTTGAAATCCATGTG TATTCAAGGTGGCCCTGATGCTGAGAGTTGAAATCCATGTG < 41bp 0.818748106053644 0.615537010403607 0.30129182 0.12070072 prediction 0.406422191300075 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12229614 chr11:12229617 nonsynonymous SNV 0.950 5 24 hm5C_associated_SNPs_96017 0 0 0 0 2 MICAL2 chr11:12229570 3'AG 12229570 Downstream 48bp
chr11 12229617 12229617 1 + G A BRCA 12229614 + 12229594 12229634 41 TATTCAAGGTGGCCCTGATGCTGGGAGTTGAAATCCATGTG TATTCAAGGTGGCCCTGATGCTGAGAGTTGAAATCCATGTG < 41bp 0.818748106053644 0.615537010403607 0.30129182 0.12070072 prediction 0.406422191300075 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12229614 chr11:12229617 nonsynonymous SNV 0.950 5 24 hm5C_associated_SNPs_96017 0 0 0 0 2 MICAL2 chr11:12229686 5'GT 12229686 Upstream 70bp
chr10 118641116 118641116 1 + T C rs112447423 118641115 + 118641095 118641135 41 CTGCTGCGGCTAGGGAGCCGCTGGTGCCCACCTTCCCCACA CTGCTGCGGCTAGGGAGCCGCCGGTGCCCACCTTCCCCACA < 41bp 0.784823627849745 0.581614033706631 0.6181609 0.8674823 prediction 0.406419188286229 Functional Loss - ENO4 ENSG00000188316 CDS Human protein_coding chr10:118641115 chr10:118641116 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_96018 0 0 0 0 1 ENO4 chr10:118641026 3'AG 118641026 Downstream 91bp
chr15 68473579 68473579 1 + C T UCEC 68473576 + 68473556 68473596 41 AAGTCTTCCACATCAAGCATCTCCAGTATCCCGCACCCCAA AAGTCTTCCACATCAAGCATCTCTAGTATCCCGCACCCCAA < 41bp 0.703208992743698 0.464848476377008 0.95231867 0.63483626 prediction 0.406417985487396 Functional Loss - PIAS1 ENSG00000033800 CDS Human protein_coding chr15:68473576 chr15:68473579 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_96021 0 0 1 0 1 PIAS1 chr15:68473550 3'AG 68473550 Downstream 30bp
chr1 67685299 67685299 1 + G T STAD 67685297 + 67685277 67685317 41 TTTTACATATGTGCAACAGTCAGAATTCTACTTGGAGCCAA TTTTACATATGTGCAACAGTCATAATTCTACTTGGAGCCAA < 41bp 0.703207009842487 0.413705519841887 0.30656785 0.09491265 prediction 0.406414019684974 Functional Loss - IL23R ENSG00000162594 CDS Human protein_coding chr1:67685297 chr1:67685299 stopgain 0.996 0 23 hm5C_associated_SNPs_96022 0 0 1 2 2 IL23R chr1:67685257 3'AG 67685257 Downstream 43bp
chr1 67685299 67685299 1 + G T STAD 67685297 + 67685277 67685317 41 TTTTACATATGTGCAACAGTCAGAATTCTACTTGGAGCCAA TTTTACATATGTGCAACAGTCATAATTCTACTTGGAGCCAA < 41bp 0.703207009842487 0.413705519841887 0.30656785 0.09491265 prediction 0.406414019684974 Functional Loss - IL23R ENSG00000162594 CDS Human protein_coding chr1:67685297 chr1:67685299 stopgain 0.996 0 23 hm5C_associated_SNPs_96022 0 0 1 2 2 IL23R chr1:67685324 5'GT 67685324 Upstream 26bp
chr5 154330496 154330496 1 + G T GBM 154330494 + 154330474 154330514 41 GCCTGGAGAACCTCGGAGACCAGCAGTAAGTTCGTGGGTAG GCCTGGAGAACCTCGGAGACCATCAGTAAGTTCGTGGGTAG < 41bp 0.905621914306019 0.702415041229175 0.9099571 0.2410757 prediction 0.406413746153688 Functional Loss - MRPL22 ENSG00000082515 CDS Human protein_coding chr5:154330494 chr5:154330496 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_96023 0 0 1 0 1 MRPL22 chr5:154330498 5'GT 154330498 Upstream 3bp
chr19 15222219 15222219 1 + G T UCEC 15222215 + 15222195 15222235 41 CAGTGCAGCGGTCTGCCTATCTGAGGACCTGTACCCCGATA CAGTGCAGCGGTCTGCCTATCTGATGACCTGTACCCCGATA < 41bp 0.741758149816984 0.538551555968529 0.5112205 0.25493544 prediction 0.406413187696909 Functional Loss - SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15222215 chr19:15222219 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_96024 0 0 0 0 2 SYDE1 chr19:15222124 3'AG 15222124 Downstream 96bp
chr19 15222219 15222219 1 + G T UCEC 15222215 + 15222195 15222235 41 CAGTGCAGCGGTCTGCCTATCTGAGGACCTGTACCCCGATA CAGTGCAGCGGTCTGCCTATCTGATGACCTGTACCCCGATA < 41bp 0.741758149816984 0.538551555968529 0.5112205 0.25493544 prediction 0.406413187696909 Functional Loss - SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15222215 chr19:15222219 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_96024 0 0 0 0 2 SYDE1 chr19:15222250 5'GT 15222250 Upstream 32bp
chr5 117618362 117618362 1 + G A rs556230393 117618359 + 117618339 117618379 41 GGATGTGAGGAGCGCCTCTGCCCGGCCGCGACCCCGTCTGG GGATGTGAGGAGCGCCTCTGCCCAGCCGCGACCCCGTCTGG < 41bp 0.800802236200482 0.597596894700581 0.36002535 0.28212819 prediction 0.406410682999802 Functional Loss - LINC02148 ENSG00000250427 ncRNA_exonic Human lincRNA chr5:117618359 chr5:117618362 . . 0 24 hm5C_associated_SNPs_96026 0 0 0 0 1 LINC02148 chr5:117618422 5'GT 117618422 Upstream 61bp
chr16 16418964 16418964 1 + G A rs528954986 16418961 + 16418941 16418981 41 CGCTGTCGCCAGGGCCACTGCGAGGAGTTCTGTGTCTACAA CGCTGTCGCCAGGGCCACTGCGAAGAGTTCTGTGTCTACAA < 41bp 0.823872884381467 0.620668512126866 0.9422779 0.9204314 prediction 0.406408744509203 Functional Loss - LOC100288162;PKD1P1;PKD1P4-NPIPA8 ENSG00000244257 ncRNA_exonic Human unprocessed_pseudogene chr16:16418961 chr16:16418964 . . 0 24 hm5C_associated_SNPs_96027 0 0 0 0 1 LOC100288162;PKD1P1;PKD1P4-NPIPA8 chr16:16418885 3'AG 16418885 Downstream 80bp
chr6 30881130 30881130 1 + G A STAD 30881127 + 30881107 30881147 41 ATCACCGACCAGATCCGGCTCTGGGAGCTGGAAAGGGACAG ATCACCGACCAGATCCGGCTCTGAGAGCTGGAAAGGGACAG < 41bp 0.712480147592552 0.509277347111165 0.36222088 0.23673692 prediction 0.406405600962773 Functional Loss - GTF2H4 ENSG00000213780 CDS Human protein_coding chr6:30881127 chr6:30881130 stopgain 1.000 0 24 hm5C_associated_SNPs_96028 0 0 1 2 1 GTF2H4 chr6:30881086 3'AG 30881086 Downstream 45bp
chr1 3639930 3639930 1 + C T ACC 3639927 + 3639907 3639947 41 CCTCCCGGCAGGACAGTCTGCTCCAGCCAGCCACCTCATCC CCTCCCGGCAGGACAGTCTGCTCTAGCCAGCCACCTCATCC < 41bp 0.70319283955946 0.495259816998655 0.30434602 0.15535185 prediction 0.406385679118921 Functional Loss - TP73 ENSG00000078900 CDS Human protein_coding chr1:3639927 chr1:3639930 nonsynonymous SNV 0.988 5 24 hm5C_associated_SNPs_96034 0 0 0 0 1 TP73 chr1:3639918 3'AG 3639918 Downstream 13bp
chr11 67187016 67187016 1 - C A LUSC 67187020 - 67187000 67187040 41 ACCACTGCACCCAGCTCTGCCCGCGGGTGCAGACGCCATGC ACCACTGCACCCAGCTCTGCCCGCTGGTGCAGACGCCATGC < 41bp 0.747029863099158 0.543838447440329 0.8928492 0.49270344 prediction 0.406382831317657 Functional Loss - CARNS1 ENSG00000172508;ENSG00000172531 CDS Human other chr11:67187020 chr11:67187016 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_96036 0 0 0 0 1 CARNS1 chr11:67187068 3'AG 67187068 Downstream 53bp
chr7 73483018 73483018 1 + G A CESC 73483015 + 73482995 73483035 41 TGCCTGGGGAAAGCTTGTGGCCGGAAGAGAAAATGAGCTTC TGCCTGGGGAAAGCTTGTGGCCGAAAGAGAAAATGAGCTTC < 41bp 0.723001137386418 0.519811727241787 0.42741024 0.24398777 prediction 0.406378820289263 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73483015 chr7:73483018 synonymous SNV . 0 24 hm5C_associated_SNPs_96038 0 0 0 0 1 ELN chr7:73482987 3'AG 73482987 Downstream 32bp
chrX 100492743 100492743 1 + A T LGG 100492741 + 100492721 100492761 41 AGGGGGATGTGGCCCTGGTGCAACAGGAGAAGGAGACACAT AGGGGGATGTGGCCCTGGTGCATCAGGAGAAGGAGACACAT < 41bp 0.723018198752197 0.519831567319532 0.5752719 0.41870308 prediction 0.406373262865331 Functional Loss - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100492741 chrX:100492743 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_96043 0 0 0 0 1 DRP2 chrX:100492764 5'GT 100492764 Upstream 22bp
chr9 141010044 141010044 1 + T C UCEC 141010043 + 141010023 141010063 41 TCCACCCTCTGAAGGCCACCCTGGAGCAGACACAGCCGGCT TCCACCCTCTGAAGGCCACCCCGGAGCAGACACAGCCGGCT < 41bp 0.703183966208117 0.451955422959832 0.19770613 0.38444215 prediction 0.406367932416233 Functional Loss - CACNA1B ENSG00000148408 CDS Human protein_coding chr9:141010043 chr9:141010044 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_96045 0 0 0 0 2 CACNA1B chr9:141010004 3'AG 141010004 Downstream 41bp
chr9 141010044 141010044 1 + T C UCEC 141010043 + 141010023 141010063 41 TCCACCCTCTGAAGGCCACCCTGGAGCAGACACAGCCGGCT TCCACCCTCTGAAGGCCACCCCGGAGCAGACACAGCCGGCT < 41bp 0.703183966208117 0.451955422959832 0.19770613 0.38444215 prediction 0.406367932416233 Functional Loss - CACNA1B ENSG00000148408 CDS Human protein_coding chr9:141010043 chr9:141010044 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_96045 0 0 0 0 2 CACNA1B chr9:141010131 5'GT 141010131 Upstream 88bp
chr11 18291328 18291328 1 + G A SKCM 18291325 + 18291305 18291345 41 CGGAGGACTCGCTGGCTGATCAGGCTGCCAATGAATGGGGC CGGAGGACTCGCTGGCTGATCAGACTGCCAATGAATGGGGC < 41bp 0.829991008617291 0.626809496150539 0.88505673 0.5839199 prediction 0.406363024933505 Functional Loss - SAA1 ENSG00000173432 CDS Human protein_coding chr11:18291325 chr11:18291328 nonsynonymous SNV 0.190 0 24 hm5C_associated_SNPs_96047 0 0 0 0 1 SAA1 chr11:18291264 3'AG 18291264 Downstream 65bp
chr6 43624330 43624330 1 + G T UCEC 43624326 + 43624306 43624346 41 CTTTCTAGGACTGTCCTTGTCTGAGGCCAAGAAGCTCAGCT CTTTCTAGGACTGTCCTTGTCTGATGCCAAGAAGCTCAGCT < 41bp 0.703432554648933 0.50025147960138 0.8506582 0.4015674 prediction 0.406362150095104 Functional Loss - RSPH9 ENSG00000172426 CDS Human protein_coding chr6:43624326 chr6:43624330 nonsynonymous SNV 0.972 1 25 hm5C_associated_SNPs_96048 0 0 0 0 1 RSPH9 chr6:43624314 3'AG 43624314 Downstream 17bp
chr3 47446215 47446215 1 + T C LIHC 47446214 + 47446194 47446234 41 ACCTCGGCCAGCTTCATTACCTGCAGAGTCGGGTCCCCATG ACCTCGGCCAGCTTCATTACCCGCAGAGTCGGGTCCCCATG < 41bp 0.840795012968873 0.637616918246436 0.36909604 0.12887171 prediction 0.406356189444875 Functional Loss - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47446214 chr3:47446215 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_96052 0 0 1 0 2 PTPN23 chr3:47446142 3'AG 47446142 Downstream 74bp
chr3 47446215 47446215 1 + T C LIHC 47446214 + 47446194 47446234 41 ACCTCGGCCAGCTTCATTACCTGCAGAGTCGGGTCCCCATG ACCTCGGCCAGCTTCATTACCCGCAGAGTCGGGTCCCCATG < 41bp 0.840795012968873 0.637616918246436 0.36909604 0.12887171 prediction 0.406356189444875 Functional Loss - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47446214 chr3:47446215 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_96052 0 0 1 0 2 PTPN23 chr3:47446269 5'GT 47446269 Upstream 55bp
chr17 27009838 27009838 1 + C T STAD 27009835 + 27009815 27009855 41 GCACGAGACAGAGCAGTTTCCCGCGGAGCCCTTGGAGCTGG GCACGAGACAGAGCAGTTTCCCGTGGAGCCCTTGGAGCTGG < 41bp 0.762407728655009 0.559231409512757 0.85679555 0.37451744 prediction 0.406352638284505 Functional Loss - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27009835 chr17:27009838 nonsynonymous SNV 0.740 1 24 hm5C_associated_SNPs_96053 0 0 1 0 2 SUPT6H chr17:27009745 3'AG 27009745 Downstream 94bp
chr17 27009838 27009838 1 + C T STAD 27009835 + 27009815 27009855 41 GCACGAGACAGAGCAGTTTCCCGCGGAGCCCTTGGAGCTGG GCACGAGACAGAGCAGTTTCCCGTGGAGCCCTTGGAGCTGG < 41bp 0.762407728655009 0.559231409512757 0.85679555 0.37451744 prediction 0.406352638284505 Functional Loss - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27009835 chr17:27009838 nonsynonymous SNV 0.740 1 24 hm5C_associated_SNPs_96053 0 0 1 0 2 SUPT6H chr17:27009874 5'GT 27009874 Upstream 37bp
chr1 93680515 93680515 1 + G A rs112836442 93680512 + 93680492 93680532 41 AAGCTTCAAACTCCAGCAAACTGGAAAGTGAAGTAAGCTTG AAGCTTCAAACTCCAGCAAACTGAAAAGTGAAGTAAGCTTG < 41bp 0.726866587256202 0.523698948573331 0.17331648 0.20013705 prediction 0.406335277365742 Functional Loss - CCDC18 ENSG00000122483 CDS Human protein_coding chr1:93680512 chr1:93680515 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_96057 0 0 0 0 1 CCDC18 chr1:93680523 5'GT 93680523 Upstream 9bp
chr17 1649065 1649065 1 + G A CESC 1649062 + 1649042 1649082 41 TCTGCAGCAGAGACCCCACCCCAGAGCAGACCCACAGGCTG TCTGCAGCAGAGACCCCACCCCAAAGCAGACCCACAGGCTG < 41bp 0.703167182506468 0.456267971025351 0.29817045 0.15804261 prediction 0.406334365012936 Functional Loss - SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1649062 chr17:1649065 nonsynonymous SNV 0.008 1 24 hm5C_associated_SNPs_96060 0 0 1 0 1 SERPINF2 chr17:1649002 3'AG 1649002 Downstream 64bp
chr6 167719444 167719444 1 + C T UCEC 167719441 + 167719421 167719461 41 CTGGGCATCCAGTTCGTCGGCTACGTGATGATCTGCTTCTC CTGGGCATCCAGTTCGTCGGCTATGTGATGATCTGCTTCTC < 41bp 0.726104930047233 0.522937767016566 0.058998078 0.090408236 prediction 0.406334326061333 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167719441 chr6:167719444 synonymous SNV . 0 24 hm5C_associated_SNPs_96061 0 0 0 0 2 UNC93A chr6:167719403 3'AG 167719403 Downstream 42bp
chr6 167719444 167719444 1 + C T UCEC 167719441 + 167719421 167719461 41 CTGGGCATCCAGTTCGTCGGCTACGTGATGATCTGCTTCTC CTGGGCATCCAGTTCGTCGGCTATGTGATGATCTGCTTCTC < 41bp 0.726104930047233 0.522937767016566 0.058998078 0.090408236 prediction 0.406334326061333 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167719441 chr6:167719444 synonymous SNV . 0 24 hm5C_associated_SNPs_96061 0 0 0 0 2 UNC93A chr6:167719538 5'GT 167719538 Upstream 95bp
chr17 7605837 7605837 1 + C T UCEC 7605835 + 7605815 7605855 41 TCACCCACCTCTGCTTTCATCCCGATGGCAACCGCTTCTTC TCACCCACCTCTGCTTTCATCCTGATGGCAACCGCTTCTTC < 41bp 0.856279916388445 0.653115019645831 0.77839124 0.33617067 prediction 0.406329793485228 Functional Loss - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7605835 chr17:7605837 synonymous SNV . 0 23 hm5C_associated_SNPs_96063 0 0 1 0 1 WRAP53 chr17:7605870 5'GT 7605870 Upstream 34bp
chr3 12610400 12610400 1 + A C rs200877703 12610396 + 12610376 12610416 41 ATTTTATGCATGGTGTGTGTCGGGAAGGAAGTCAGTGCCTA ATTTTATGCATGGTGTGTGTCGGGCAGGAAGTCAGTGCCTA < 41bp 0.940459224521265 0.737295536127311 0.89616656 0.7906015 prediction 0.406327376787907 Functional Loss - MKRN2 ENSG00000075975 CDS Human protein_coding chr3:12610396 chr3:12610400 nonsynonymous SNV 0.925 4 25 hm5C_associated_SNPs_96064 0 0 1 0 1 MKRN2 chr3:12610374 3'AG 12610374 Downstream 27bp
chr3 12861636 12861636 1 + C T COAD 12861634 + 12861614 12861654 41 ACAGCGGTCAAGTTCCTTATCTCGGACCAGCCCCATCCCAT ACAGCGGTCAAGTTCCTTATCTTGGACCAGCCCCATCCCAT < 41bp 0.861345173986493 0.658183305482541 0.14281645 0.16781542 prediction 0.406323737007905 Functional Loss - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12861634 chr3:12861636 nonsynonymous SNV 0.878 0 23 hm5C_associated_SNPs_96066 0 0 0 0 2 CAND2 chr3:12861585 3'AG 12861585 Downstream 52bp
chr3 12861636 12861636 1 + C T COAD 12861634 + 12861614 12861654 41 ACAGCGGTCAAGTTCCTTATCTCGGACCAGCCCCATCCCAT ACAGCGGTCAAGTTCCTTATCTTGGACCAGCCCCATCCCAT < 41bp 0.861345173986493 0.658183305482541 0.14281645 0.16781542 prediction 0.406323737007905 Functional Loss - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12861634 chr3:12861636 nonsynonymous SNV 0.878 0 23 hm5C_associated_SNPs_96066 0 0 0 0 2 CAND2 chr3:12861680 5'GT 12861680 Upstream 45bp
chr2 38224576 38224576 1 + G T SARC 38224573 + 38224553 38224593 41 TTGCAGGTCTCAAAACTGAGCTGGATTGAGAAAAAAATGGC TTGCAGGTCTCAAAACTGAGCTGTATTGAGAAAAAAATGGC < 41bp 0.703161798608174 0.333182335897018 0.26357028 0.38582456 prediction 0.406323597216348 Functional Loss - RMDN2 ENSG00000115841 CDS Human protein_coding chr2:38224573 chr2:38224576 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_96067 0 0 0 0 2 RMDN2 chr2:38224559 3'AG 38224559 Downstream 18bp
chr2 38224576 38224576 1 + G T SARC 38224573 + 38224553 38224593 41 TTGCAGGTCTCAAAACTGAGCTGGATTGAGAAAAAAATGGC TTGCAGGTCTCAAAACTGAGCTGTATTGAGAAAAAAATGGC < 41bp 0.703161798608174 0.333182335897018 0.26357028 0.38582456 prediction 0.406323597216348 Functional Loss - RMDN2 ENSG00000115841 CDS Human protein_coding chr2:38224573 chr2:38224576 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_96067 0 0 0 0 2 RMDN2 chr2:38224657 5'GT 38224657 Upstream 82bp
chr20 1903287 1903287 1 + C T UCEC 1903284 + 1903264 1903304 41 AAGGAGCAGGGCTCAAATACCGCCGCTGGTGAGGCCTCTAT AAGGAGCAGGGCTCAAATACCGCTGCTGGTGAGGCCTCTAT < 41bp 0.703158487112059 0.486455907409363 0.39132935 0.17762107 prediction 0.406316974224117 Functional Loss - SIRPA ENSG00000198053 CDS Human protein_coding chr20:1903284 chr20:1903287 synonymous SNV . 0 24 hm5C_associated_SNPs_96069 0 0 0 0 1 SIRPA chr20:1903291 5'GT 1903291 Upstream 5bp
chr9 117026664 117026664 1 + G T KIRC 117026660 + 117026640 117026680 41 CCGAGGACCGGACGGACCAGCTGGGGAGCAAGGGTCCAGGG CCGAGGACCGGACGGACCAGCTGGTGAGCAAGGGTCCAGGG < 41bp 0.711911195897306 0.508759787013137 0.80072594 0.69955957 prediction 0.406302817768338 Functional Loss - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117026660 chr9:117026664 synonymous SNV . 0 25 hm5C_associated_SNPs_96074 0 0 1 0 2 COL27A1 chr9:117026635 3'AG 117026635 Downstream 30bp
chr9 117026664 117026664 1 + G T KIRC 117026660 + 117026640 117026680 41 CCGAGGACCGGACGGACCAGCTGGGGAGCAAGGGTCCAGGG CCGAGGACCGGACGGACCAGCTGGTGAGCAAGGGTCCAGGG < 41bp 0.711911195897306 0.508759787013137 0.80072594 0.69955957 prediction 0.406302817768338 Functional Loss - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117026660 chr9:117026664 synonymous SNV . 0 25 hm5C_associated_SNPs_96074 0 0 1 0 2 COL27A1 chr9:117026688 5'GT 117026688 Upstream 25bp
chr17 18793182 18793182 1 + G A CESC 18793179 + 18793159 18793199 41 ATCGTGGCCAAGTCTCCAGCCTCGGCGAAGAGGTAGGTGGG ATCGTGGCCAAGTCTCCAGCCTCAGCGAAGAGGTAGGTGGG < 41bp 0.703147758684409 0.452071872639892 0.5319173 0.2788803 prediction 0.406295517368817 Functional Loss - PRPSAP2 ENSG00000141127 CDS Human protein_coding chr17:18793179 chr17:18793182 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_96077 0 0 1 0 2 PRPSAP2 chr17:18793135 3'AG 18793135 Downstream 48bp
chr17 18793182 18793182 1 + G A CESC 18793179 + 18793159 18793199 41 ATCGTGGCCAAGTCTCCAGCCTCGGCGAAGAGGTAGGTGGG ATCGTGGCCAAGTCTCCAGCCTCAGCGAAGAGGTAGGTGGG < 41bp 0.703147758684409 0.452071872639892 0.5319173 0.2788803 prediction 0.406295517368817 Functional Loss - PRPSAP2 ENSG00000141127 CDS Human protein_coding chr17:18793179 chr17:18793182 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_96077 0 0 1 0 2 PRPSAP2 chr17:18793190 5'GT 18793190 Upstream 9bp
chr14 96134470 96134470 1 + G A HNSC 96134467 + 96134447 96134487 41 GTTCACCTTTTTGCAGATCACGGGAATTACAAGTGACATCC GTTCACCTTTTTGCAGATCACGGAAATTACAAGTGACATCC < 41bp 0.703145979176411 0.489933727322984 0.5267998 0.16504925 prediction 0.406291958352821 Functional Loss - TCL6 ENSG00000187621;ENSG00000259084 ncRNA_exonic Human other chr14:96134467 chr14:96134470 . . 0 24 hm5C_associated_SNPs_96078 0 0 0 0 1 TCL6 chr14:96134463 3'AG 96134463 Downstream 8bp
chr14 96134471 96134471 1 + A C UCEC 96134467 + 96134447 96134487 41 GTTCACCTTTTTGCAGATCACGGGAATTACAAGTGACATCC GTTCACCTTTTTGCAGATCACGGGCATTACAAGTGACATCC < 41bp 0.703145979176411 0.350067330497189 0.5267998 0.12523383 prediction 0.406291958352821 Functional Loss - TCL6 ENSG00000187621;ENSG00000259084 ncRNA_exonic Human other chr14:96134467 chr14:96134471 . . 0 25 hm5C_associated_SNPs_96079 0 0 0 0 1 TCL6 chr14:96134463 3'AG 96134463 Downstream 9bp
chr7 75511532 75511532 1 + C T UCEC 75511529 + 75511509 75511549 41 ACCTCTTTCCTCAGTAATGTCTGCGGGCTGTCCATCGGGCT ACCTCTTTCCTCAGTAATGTCTGTGGGCTGTCCATCGGGCT < 41bp 0.747817471181316 0.544672302312538 0.28630027 0.25568932 prediction 0.406290337737555 Functional Loss - RHBDD2 ENSG00000005486 CDS Human protein_coding chr7:75511529 chr7:75511532 synonymous SNV . 0 24 hm5C_associated_SNPs_96080 0 0 1 0 1 RHBDD2 chr7:75511554 5'GT 75511554 Upstream 23bp
chrX 135291466 135291466 1 + C T GBM 135291464 + 135291444 135291484 41 CTAGGAAGCCCCCAGTGTGCCACGGGAAACGCTTGCCTCTC CTAGGAAGCCCCCAGTGTGCCATGGGAAACGCTTGCCTCTC < 41bp 0.828526763238575 0.625384569050004 0.74421155 0.77386683 prediction 0.406284388377143 Functional Loss - FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291464 chrX:135291466 synonymous SNV . 0 23 hm5C_associated_SNPs_96081 0 0 1 0 1 FHL1 chrX:135291402 3'AG 135291402 Downstream 65bp
chr22 25243626 25243626 1 + C T UCEC 25243624 + 25243604 25243644 41 CTGTGGAGGCCTGCGTTCTGCACGGGCTTCGGCGGCGGGCG CTGTGGAGGCCTGCGTTCTGCATGGGCTTCGGCGGCGGGCG < 41bp 0.853515144965399 0.650372996845156 0.8403139 0.5270179 prediction 0.406284296240485 Functional Loss - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25243624 chr22:25243626 synonymous SNV . 0 23 hm5C_associated_SNPs_96082 0 0 0 0 1 SGSM1 chr22:25243601 3'AG 25243601 Downstream 26bp
chr5 52370271 52370271 1 + C T UCEC 52370268 + 52370248 52370288 41 GCATCTCAGAAGTCTGTTGCCTGCGATGTAGGCTACCCTGC GCATCTCAGAAGTCTGTTGCCTGTGATGTAGGCTACCCTGC < 41bp 0.755389605233734 0.552247877976975 0.5317637 0.35100526 prediction 0.406283454513517 Functional Loss - ITGA2 ENSG00000164171 CDS Human protein_coding chr5:52370268 chr5:52370271 synonymous SNV . 0 24 hm5C_associated_SNPs_96083 0 0 1 0 2 ITGA2 chr5:52370215 3'AG 52370215 Downstream 57bp
chr5 52370271 52370271 1 + C T UCEC 52370268 + 52370248 52370288 41 GCATCTCAGAAGTCTGTTGCCTGCGATGTAGGCTACCCTGC GCATCTCAGAAGTCTGTTGCCTGTGATGTAGGCTACCCTGC < 41bp 0.755389605233734 0.552247877976975 0.5317637 0.35100526 prediction 0.406283454513517 Functional Loss - ITGA2 ENSG00000164171 CDS Human protein_coding chr5:52370268 chr5:52370271 synonymous SNV . 0 24 hm5C_associated_SNPs_96083 0 0 1 0 2 ITGA2 chr5:52370307 5'GT 52370307 Upstream 37bp
chr9 101767315 101767315 1 + G A rs35934703 101767312 + 101767292 101767332 41 TCTCCATGTCCGCCCAGAGCCTCGGGGAAGAGGCCACTGTG TCTCCATGTCCGCCCAGAGCCTCAGGGAAGAGGCCACTGTG < 41bp 0.826579990296292 0.623439440748525 0.34034514 0.1388464 prediction 0.406281099095534 Functional Loss - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101767312 chr9:101767315 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_96084 0 0 0 0 1 COL15A1 chr9:101767332 5'GT 101767332 Upstream 18bp
chr20 19870220 19870220 1 + C T UCEC 19870217 + 19870197 19870237 41 TCTCTACCTTCAGGAGTCCCCGGCGTGCAGTGGAGCCTCGC TCTCTACCTTCAGGAGTCCCCGGTGTGCAGTGGAGCCTCGC < 41bp 0.759314127019902 0.556174681329408 0.8654554 0.82794785 prediction 0.406278891380988 Functional Loss - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19870217 chr20:19870220 nonsynonymous SNV 0.111 1 24 hm5C_associated_SNPs_96085 0 0 1 0 1 RIN2 chr20:19870302 5'GT 19870302 Upstream 83bp
chr11 212920 212920 1 + G A UCEC 212917 + 212897 212937 41 GCCTCATGGCAGGAGGCCGGCCCGAGGGCCAGTACTCAGAG GCCTCATGGCAGGAGGCCGGCCCAAGGGCCAGTACTCAGAG < 41bp 0.818179483741235 0.615040882820137 0.87751406 0.8475654 prediction 0.406277201842196 Functional Loss - RIC8A ENSG00000177963 CDS Human protein_coding chr11:212917 chr11:212920 nonsynonymous SNV 0.975 1 24 hm5C_associated_SNPs_96087 0 0 1 0 2 RIC8A chr11:212837 3'AG 212837 Downstream 84bp
chr11 212920 212920 1 + G A UCEC 212917 + 212897 212937 41 GCCTCATGGCAGGAGGCCGGCCCGAGGGCCAGTACTCAGAG GCCTCATGGCAGGAGGCCGGCCCAAGGGCCAGTACTCAGAG < 41bp 0.818179483741235 0.615040882820137 0.87751406 0.8475654 prediction 0.406277201842196 Functional Loss - RIC8A ENSG00000177963 CDS Human protein_coding chr11:212917 chr11:212920 nonsynonymous SNV 0.975 1 24 hm5C_associated_SNPs_96087 0 0 1 0 2 RIC8A chr11:212981 5'GT 212981 Upstream 62bp
chr1 27269437 27269437 1 + C T HNSC 27269434 + 27269414 27269454 41 TGGACATCCAGCGGCGGCACCTCCGGGTGGGGCTCAAGGGG TGGACATCCAGCGGCGGCACCTCTGGGTGGGGCTCAAGGGG < 41bp 0.703138362332441 0.466955569545469 0.68916225 0.23331514 prediction 0.406276724664882 Functional Loss - NUDC ENSG00000090273 CDS Human protein_coding chr1:27269434 chr1:27269437 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_96088 0 0 1 0 1 NUDC chr1:27269362 3'AG 27269362 Downstream 76bp
chr1 27269436 27269436 1 + C T SKCM 27269434 + 27269414 27269454 41 TGGACATCCAGCGGCGGCACCTCCGGGTGGGGCTCAAGGGG TGGACATCCAGCGGCGGCACCTTCGGGTGGGGCTCAAGGGG < 41bp 0.703138362332441 0.403947411427849 0.68916225 0.31959862 prediction 0.406276724664882 Functional Loss - NUDC ENSG00000090273 CDS Human protein_coding chr1:27269434 chr1:27269436 synonymous SNV . 0 23 hm5C_associated_SNPs_96089 0 0 1 0 1 NUDC chr1:27269362 3'AG 27269362 Downstream 75bp
chr17 19470414 19470414 1 + G A COAD 19470411 + 19470391 19470431 41 AATGCTCTCTGCCTGCAGTGCACGAGTGGTGGTGTTCTGAG AATGCTCTCTGCCTGCAGTGCACAAGTGGTGGTGTTCTGAG < 41bp 0.815233256261878 0.612097505865687 0.12065545 0.082461774 prediction 0.406271500792381 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19470411 chr17:19470414 synonymous SNV . 0 24 hm5C_associated_SNPs_96091 0 0 0 0 1 SLC47A1 chr17:19470409 3'AG 19470409 Downstream 6bp
chr11 117982597 117982597 1 + C T UCEC 117982595 + 117982575 117982615 41 CTGGACCCCCACTGGGTCCTCACGGCAGCCCACTGCTTCAG CTGGACCCCCACTGGGTCCTCATGGCAGCCCACTGCTTCAG < 41bp 0.859333691083413 0.656198248362937 0.5167846 0.2682613 prediction 0.406270885440951 Functional Loss - TMPRSS4 ENSG00000137648 CDS Human protein_coding chr11:117982595 chr11:117982597 nonsynonymous SNV 0.766 5 23 hm5C_associated_SNPs_96092 0 0 0 0 1 TMPRSS4 chr11:117982615 5'GT 117982615 Upstream 19bp
chr4 75178020 75178020 1 + C T BLCA 75178017 + 75177997 75178037 41 CATGAGCTAGAGAAAGCCATCTGCAGGTAAATGCAAAGAAA CATGAGCTAGAGAAAGCCATCTGTAGGTAAATGCAAAGAAA < 41bp 0.755557727066862 0.552423786567898 0.06820673 0.109837055 prediction 0.406267880997928 Functional Loss - EPGN ENSG00000182585 CDS Human protein_coding chr4:75178017 chr4:75178020 synonymous SNV . 0 24 hm5C_associated_SNPs_96094 0 0 0 0 1 EPGN chr4:75178022 5'GT 75178022 Upstream 3bp
chr4 164271493 164271493 1 + G A GBM 164271490 + 164271470 164271510 41 AGAGAATAATACTGCTGCCACTCGGAATTCTGATTTCCCAG AGAGAATAATACTGCTGCCACTCAGAATTCTGATTTCCCAG < 41bp 0.802450334221707 0.599316438609673 0.113517284 0.021893948 prediction 0.40626779122407 Functional Loss - NPY5R ENSG00000164129 CDS Human protein_coding chr4:164271490 chr4:164271493 nonsynonymous SNV 0.151 0 24 hm5C_associated_SNPs_96095 0 0 0 0 1 NPY5R chr4:164271417 3'AG 164271417 Downstream 77bp
chrX 3028268 3028268 1 + C T CESC 3028265 + 3028245 3028285 41 TACTGTGGCTCCTACCTGCACGCCGTGCGGTGGATCCCCAA TACTGTGGCTCCTACCTGCACGCTGTGCGGTGGATCCCCAA < 41bp 0.76357366461101 0.560444481801436 0.05542797 0.041743934 prediction 0.406258365619147 Functional Loss - ARSF ENSG00000062096 CDS Human protein_coding chrX:3028265 chrX:3028268 synonymous SNV . 0 24 hm5C_associated_SNPs_96097 0 0 0 0 1 ARSF chrX:3028293 5'GT 3028293 Upstream 26bp
chr2 27259421 27259421 1 + G A UCEC 27259418 + 27259398 27259438 41 GTCTCACCATCATGTGGGCCCTGGGTCAAGCAGGTTTTGCC GTCTCACCATCATGTGGGCCCTGAGTCAAGCAGGTTTTGCC < 41bp 0.70312890050754 0.450039137583411 0.24202141 0.1639581 prediction 0.40625780101508 Functional Loss - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27259418 chr2:27259421 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_96098 0 0 1 1 2 TMEM214 chr2:27259355 3'AG 27259355 Downstream 67bp
chr2 27259421 27259421 1 + G A UCEC 27259418 + 27259398 27259438 41 GTCTCACCATCATGTGGGCCCTGGGTCAAGCAGGTTTTGCC GTCTCACCATCATGTGGGCCCTGAGTCAAGCAGGTTTTGCC < 41bp 0.70312890050754 0.450039137583411 0.24202141 0.1639581 prediction 0.40625780101508 Functional Loss - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27259418 chr2:27259421 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_96098 0 0 1 1 2 TMEM214 chr2:27259460 5'GT 27259460 Upstream 40bp
chr2 201485450 201485450 1 + G A UCEC 201485447 + 201485427 201485467 41 CTGTCTGGTGTGAAGCATGCCACGGGGGAGGCCATCTACTG CTGTCTGGTGTGAAGCATGCCACAGGGGAGGCCATCTACTG < 41bp 0.802809474542879 0.599681650172716 0.18502787 0.07566321 prediction 0.406255648740325 Functional Loss - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201485447 chr2:201485450 synonymous SNV . 0 24 hm5C_associated_SNPs_96099 0 0 0 0 2 AOX1 chr2:201485373 3'AG 201485373 Downstream 78bp
chr2 201485450 201485450 1 + G A UCEC 201485447 + 201485427 201485467 41 CTGTCTGGTGTGAAGCATGCCACGGGGGAGGCCATCTACTG CTGTCTGGTGTGAAGCATGCCACAGGGGAGGCCATCTACTG < 41bp 0.802809474542879 0.599681650172716 0.18502787 0.07566321 prediction 0.406255648740325 Functional Loss - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201485447 chr2:201485450 synonymous SNV . 0 24 hm5C_associated_SNPs_96099 0 0 0 0 2 AOX1 chr2:201485542 5'GT 201485542 Upstream 93bp
chr7 99459333 99459333 1 + G A UCEC 99459330 + 99459310 99459350 41 CCCAGTTGTTAGTAGAGTTACGAGAGTCTGCAAGAAAGATA CCCAGTTGTTAGTAGAGTTACGAAAGTCTGCAAGAAAGATA < 41bp 0.795433615704887 0.592307104265947 0.36236417 0.1715816 prediction 0.406253022877881 Functional Loss - CYP3A43 ENSG00000021461 CDS Human protein_coding chr7:99459330 chr7:99459333 nonsynonymous SNV 0.014 4 24 hm5C_associated_SNPs_96100 0 0 0 0 1 CYP3A43 chr7:99459236 3'AG 99459236 Downstream 98bp
chr1 150444379 150444379 1 + G A BRCA 150444376 + 150444356 150444396 41 CAGAACACCCTTGCCGCTCCCACGGGTCACCCACCCACGTC CAGAACACCCTTGCCGCTCCCACAGGTCACCCACCCACGTC < 41bp 0.833956353506985 0.630830900456645 0.9074128 0.37063333 prediction 0.406250906100679 Functional Loss - RPRD2 ENSG00000163125 CDS Human protein_coding chr1:150444376 chr1:150444379 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_96101 0 0 1 0 1 RPRD2 chr1:150444359 3'AG 150444359 Downstream 21bp
chr1 43675500 43675500 1 + G A rs143009991 43675497 + 43675477 43675517 41 CGCATGATGTTTGTGGGCACCTCGGTGGGAACCATTCGTGC CGCATGATGTTTGTGGGCACCTCAGTGGGAACCATTCGTGC < 41bp 0.824671983539552 0.621548938178778 0.42609352 0.7366322 prediction 0.40624609072155 Functional Loss - CFAP57 ENSG00000243710 CDS Human protein_coding chr1:43675497 chr1:43675500 synonymous SNV . 0 24 hm5C_associated_SNPs_96102 0 0 0 0 2 CFAP57 chr1:43675414 3'AG 43675414 Downstream 87bp
chr1 43675500 43675500 1 + G A rs143009991 43675497 + 43675477 43675517 41 CGCATGATGTTTGTGGGCACCTCGGTGGGAACCATTCGTGC CGCATGATGTTTGTGGGCACCTCAGTGGGAACCATTCGTGC < 41bp 0.824671983539552 0.621548938178778 0.42609352 0.7366322 prediction 0.40624609072155 Functional Loss - CFAP57 ENSG00000243710 CDS Human protein_coding chr1:43675497 chr1:43675500 synonymous SNV . 0 24 hm5C_associated_SNPs_96102 0 0 0 0 2 CFAP57 chr1:43675587 5'GT 43675587 Upstream 88bp
chr1 12061536 12061536 1 + G T UCEC 12061532 + 12061512 12061552 41 GTGGTGGATCGATCCCAGGCCGGGGACCGCATCTTCTTTGT GTGGTGGATCGATCCCAGGCCGGGTACCGCATCTTCTTTGT < 41bp 0.761896315365509 0.558773910993403 0.89104843 0.7944343 prediction 0.406244808744213 Functional Loss - MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061532 chr1:12061536 nonsynonymous SNV 0.848 3 25 hm5C_associated_SNPs_96103 0 0 1 0 2 MFN2 chr1:12061458 3'AG 12061458 Downstream 79bp
chr1 12061536 12061536 1 + G T UCEC 12061532 + 12061512 12061552 41 GTGGTGGATCGATCCCAGGCCGGGGACCGCATCTTCTTTGT GTGGTGGATCGATCCCAGGCCGGGTACCGCATCTTCTTTGT < 41bp 0.761896315365509 0.558773910993403 0.89104843 0.7944343 prediction 0.406244808744213 Functional Loss - MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061532 chr1:12061536 nonsynonymous SNV 0.848 3 25 hm5C_associated_SNPs_96103 0 0 1 0 2 MFN2 chr1:12061611 5'GT 12061611 Upstream 76bp
chr8 95674532 95674532 1 + C T UCEC 95674530 + 95674510 95674550 41 TGAGAAGAGTAGTTCAGTCTCTCGATATGGAGCCTCTCAAG TGAGAAGAGTAGTTCAGTCTCTTGATATGGAGCCTCTCAAG < 41bp 0.866365153865768 0.663243803774793 0.88458633 0.35900974 prediction 0.406242700181952 Functional Loss - ESRP1 ENSG00000104413 CDS Human protein_coding chr8:95674530 chr8:95674532 stopgain 0.954 0 23 hm5C_associated_SNPs_96104 0 0 0 0 2 ESRP1 chr8:95674500 3'AG 95674500 Downstream 33bp
chr8 95674532 95674532 1 + C T UCEC 95674530 + 95674510 95674550 41 TGAGAAGAGTAGTTCAGTCTCTCGATATGGAGCCTCTCAAG TGAGAAGAGTAGTTCAGTCTCTTGATATGGAGCCTCTCAAG < 41bp 0.866365153865768 0.663243803774793 0.88458633 0.35900974 prediction 0.406242700181952 Functional Loss - ESRP1 ENSG00000104413 CDS Human protein_coding chr8:95674530 chr8:95674532 stopgain 0.954 0 23 hm5C_associated_SNPs_96104 0 0 0 0 2 ESRP1 chr8:95674598 5'GT 95674598 Upstream 67bp
chr1 22310815 22310815 1 + C T SKCM 22310812 + 22310792 22310832 41 TGTGCTGGAGGGGACATCCGCTCCGGCTGCAATGTGAGTCA TGTGCTGGAGGGGACATCCGCTCTGGCTGCAATGTGAGTCA < 41bp 0.721827675783885 0.518708473277229 0.37222028 0.19640902 prediction 0.406238405013312 Functional Loss - CELA3B ENSG00000219073 CDS Human protein_coding chr1:22310812 chr1:22310815 synonymous SNV . 0 24 hm5C_associated_SNPs_96106 0 0 0 0 1 CELA3B chr1:22310824 5'GT 22310824 Upstream 10bp
chr17 48652921 48652921 1 + G A SKCM 48652918 + 48652898 48652938 41 CTACAGGTGGGCTCCTTCTTCATGATCAACCTGTGCCTGGT CTACAGGTGGGCTCCTTCTTCATAATCAACCTGTGCCTGGT < 41bp 0.71019178652254 0.507074563599111 0.23635527 0.07672438 prediction 0.406234445846857 Functional Loss - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48652918 chr17:48652921 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_96107 0 0 0 0 1 CACNA1G chr17:48652904 3'AG 48652904 Downstream 18bp
chr18 28968862 28968862 1 + G A UCEC 28968859 + 28968839 28968879 41 CTATTGCCGGGCTCTGAATTCACGGGGTGAAGATTTAGAAA CTATTGCCGGGCTCTGAATTCACAGGGTGAAGATTTAGAAA < 41bp 0.819094229962226 0.615977515823677 0.78860533 0.2341367 prediction 0.406233428277098 Functional Loss - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28968859 chr18:28968862 nonsynonymous SNV 0.974 0 24 hm5C_associated_SNPs_96108 0 0 0 0 1 DSG4 chr18:28968837 3'AG 28968837 Downstream 26bp
chr20 43940921 43940921 1 + C T UCEC 43940918 + 43940898 43940938 41 CAGACAAGAGGAAGCACTTTCGGCTGGTGCTGCGGCTGGTG CAGACAAGAGGAAGCACTTTCGGTTGGTGCTGCGGCTGGTG < 41bp 0.74147136970704 0.538355255746434 0.8819692 0.8445861 prediction 0.406232227921211 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43940918 chr20:43940921 synonymous SNV . 0 24 hm5C_associated_SNPs_96109 0 0 0 0 1 RBPJL chr20:43940861 3'AG 43940861 Downstream 61bp
chr12 119592158 119592158 1 + C T LGG 119592156 + 119592136 119592176 41 AGAAAGCGCCGGAGAGACTCCCCGAGCCACCTGGAGGCCCG AGAAAGCGCCGGAGAGACTCCCTGAGCCACCTGGAGGCCCG < 41bp 0.703115676692726 0.416788465182845 0.6543977 0.31444806 prediction 0.406231353385451 Functional Loss - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119592156 chr12:119592158 nonsynonymous SNV 0.992 2 23 hm5C_associated_SNPs_96110 0 0 0 0 1 SRRM4 chr12:119592188 5'GT 119592188 Upstream 31bp
chr12 119592159 119592159 1 + G A SKCM 119592156 + 119592136 119592176 41 AGAAAGCGCCGGAGAGACTCCCCGAGCCACCTGGAGGCCCG AGAAAGCGCCGGAGAGACTCCCCAAGCCACCTGGAGGCCCG < 41bp 0.703115676692726 0.459279747477769 0.6543977 0.39321172 prediction 0.406231353385451 Functional Loss - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119592156 chr12:119592159 synonymous SNV . 0 24 hm5C_associated_SNPs_96111 0 0 0 0 1 SRRM4 chr12:119592188 5'GT 119592188 Upstream 30bp
chr16 1825361 1825361 1 + G A CESC 1825358 + 1825338 1825378 41 GGGACACAGCAGCCAGAGAGCCCGAAGGTGGCCGGTGCCGA GGGACACAGCAGCCAGAGAGCCCAAAGGTGGCCGGTGCCGA < 41bp 0.824148774201944 0.621036266169688 0.36151722 0.19852757 prediction 0.406225016064513 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825358 chr16:1825361 synonymous SNV . 0 24 hm5C_associated_SNPs_96112 0 0 1 0 3 EME2 chr16:1825316 3'AG 1825316 Downstream 46bp
chr16 1825361 1825361 1 + G A CESC 1825358 + 1825338 1825378 41 GGGACACAGCAGCCAGAGAGCCCGAAGGTGGCCGGTGCCGA GGGACACAGCAGCCAGAGAGCCCAAAGGTGGCCGGTGCCGA < 41bp 0.824148774201944 0.621036266169688 0.36151722 0.19852757 prediction 0.406225016064513 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825358 chr16:1825361 synonymous SNV . 0 24 hm5C_associated_SNPs_96112 0 0 1 0 3 EME2 chr16:1825409 5'GT 1825409 Upstream 49bp
chr16 1825361 1825361 1 + G A CESC 1825358 + 1825338 1825378 41 GGGACACAGCAGCCAGAGAGCCCGAAGGTGGCCGGTGCCGA GGGACACAGCAGCCAGAGAGCCCAAAGGTGGCCGGTGCCGA < 41bp 0.824148774201944 0.621036266169688 0.36151722 0.19852757 prediction 0.406225016064513 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825358 chr16:1825361 synonymous SNV . 0 24 hm5C_associated_SNPs_96112 0 0 1 0 3 EME2 chr16:1825430 5'GT 1825430 Upstream 70bp
chr19 19218805 19218805 1 + C T rs144929128 19218802 + 19218782 19218822 41 ACCGTGCTGGGGGTCATTCCCTACGCTGGCCTGAGCTTCTT ACCGTGCTGGGGGTCATTCCCTATGCTGGCCTGAGCTTCTT < 41bp 0.762467436575371 0.559364040461785 0.03350544 0.06934565 prediction 0.406206792227172 Functional Loss - SLC25A42 ENSG00000181035 CDS Human protein_coding chr19:19218802 chr19:19218805 synonymous SNV . 0 24 hm5C_associated_SNPs_96116 0 0 0 0 1 SLC25A42 chr19:19218854 5'GT 19218854 Upstream 50bp
chr1 19923557 19923557 1 + C T UCEC 19923555 + 19923535 19923575 41 GGAACATGTCTGAGTCGGAGCTCGGCAGGAAGTGGGACCGG GGAACATGTCTGAGTCGGAGCTTGGCAGGAAGTGGGACCGG < 41bp 0.795783178608063 0.592681849097713 0.2994405 0.33036876 prediction 0.406202659020699 Functional Loss - MINOS1 ENSG00000173436 CDS Human other chr1:19923555 chr1:19923557 synonymous SNV . 0 23 hm5C_associated_SNPs_96118 0 0 1 0 1 MINOS1 chr1:19923603 5'GT 19923603 Upstream 47bp
chr11 124481559 124481559 1 + G C LUAD 124481558 + 124481538 124481578 41 GTCTGGAACTGCCCCTGGACCGGATAGTCAAGTTCGTAGCT GTCTGGAACTGCCCCTGGACCCGATAGTCAAGTTCGTAGCT < 41bp 0.703099032086643 0.377393391387027 0.6959324 0.37520963 prediction 0.406198064173285 Functional Loss - PANX3 ENSG00000154143 CDS Human protein_coding chr11:124481558 chr11:124481559 nonsynonymous SNV 0.965 1 22 hm5C_associated_SNPs_96120 0 0 0 0 1 PANX3 chr11:124481633 5'GT 124481633 Upstream 75bp
chr1 55197222 55197222 1 + G T UCEC 55197219 + 55197199 55197239 41 AAGATTCAGCCTCAGAAGGTCTAGGTGAGCTTTTCCTGGAT AAGATTCAGCCTCAGAAGGTCTATGTGAGCTTTTCCTGGAT < 41bp 0.703095402112366 0.299517148307577 0.29616797 0.05457005 prediction 0.406190804224732 Functional Loss - TTC4 ENSG00000243725 CDS Human protein_coding chr1:55197219 chr1:55197222 nonsynonymous SNV 0.740 1 24 hm5C_associated_SNPs_96123 0 0 1 0 2 TTC4 chr1:55197159 3'AG 55197159 Downstream 64bp
chr1 55197222 55197222 1 + G T UCEC 55197219 + 55197199 55197239 41 AAGATTCAGCCTCAGAAGGTCTAGGTGAGCTTTTCCTGGAT AAGATTCAGCCTCAGAAGGTCTATGTGAGCTTTTCCTGGAT < 41bp 0.703095402112366 0.299517148307577 0.29616797 0.05457005 prediction 0.406190804224732 Functional Loss - TTC4 ENSG00000243725 CDS Human protein_coding chr1:55197219 chr1:55197222 nonsynonymous SNV 0.740 1 24 hm5C_associated_SNPs_96123 0 0 1 0 2 TTC4 chr1:55197222 5'GT 55197222 Upstream 1bp
chr5 150838458 150838458 1 + G T LUSC 150838456 + 150838436 150838476 41 GCCTCAACAACCTCTCCTCCCCGGGCTCCTACCAGCGCTTT GCCTCAACAACCTCTCCTCCCCTGGCTCCTACCAGCGCTTT < 41bp 0.703092754900086 0.324133871463522 0.78300023 0.04794413 prediction 0.406185509800173 Functional Loss - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150838456 chr5:150838458 synonymous SNV . 0 23 hm5C_associated_SNPs_96127 0 0 1 0 1 SLC36A1 chr5:150838496 5'GT 150838496 Upstream 39bp
chr2 166221712 166221712 1 + G A SKCM 166221709 + 166221689 166221729 41 GTTGATATTGGAGCTCCCGCCGAGGGAGAACAGCCTGAGGT GTTGATATTGGAGCTCCCGCCGAAGGAGAACAGCCTGAGGT < 41bp 0.703089440694484 0.461564589334881 0.8840593 0.6370944 prediction 0.406178881388968 Functional Loss - SCN2A ENSG00000136531 CDS Human protein_coding chr2:166221709 chr2:166221712 synonymous SNV . 0 24 hm5C_associated_SNPs_96128 0 0 0 0 2 SCN2A chr2:166221653 3'AG 166221653 Downstream 60bp
chr2 166221712 166221712 1 + G A SKCM 166221709 + 166221689 166221729 41 GTTGATATTGGAGCTCCCGCCGAGGGAGAACAGCCTGAGGT GTTGATATTGGAGCTCCCGCCGAAGGAGAACAGCCTGAGGT < 41bp 0.703089440694484 0.461564589334881 0.8840593 0.6370944 prediction 0.406178881388968 Functional Loss - SCN2A ENSG00000136531 CDS Human protein_coding chr2:166221709 chr2:166221712 synonymous SNV . 0 24 hm5C_associated_SNPs_96128 0 0 0 0 2 SCN2A chr2:166221773 5'GT 166221773 Upstream 62bp
chr17 18344570 18344570 1 + G A STAD 18344567 + 18344547 18344587 41 GGGTGTTGGACGAGCTGACCCTGGCCAGGACTGACCTGGAG GGGTGTTGGACGAGCTGACCCTGACCAGGACTGACCTGGAG < 41bp 0.703088816343644 0.47620763720139 0.0922828 0.08158839 prediction 0.406177632687288 Functional Loss - KRT16P1 ENSG00000214856 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:18344567 chr17:18344570 . . 0 24 hm5C_associated_SNPs_96129 0 0 0 0 2 KRT16P1 chr17:18344488 3'AG 18344488 Downstream 83bp
chr17 18344570 18344570 1 + G A STAD 18344567 + 18344547 18344587 41 GGGTGTTGGACGAGCTGACCCTGGCCAGGACTGACCTGGAG GGGTGTTGGACGAGCTGACCCTGACCAGGACTGACCTGGAG < 41bp 0.703088816343644 0.47620763720139 0.0922828 0.08158839 prediction 0.406177632687288 Functional Loss - KRT16P1 ENSG00000214856 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:18344567 chr17:18344570 . . 0 24 hm5C_associated_SNPs_96129 0 0 0 0 2 KRT16P1 chr17:18344644 5'GT 18344644 Upstream 75bp
chr2 233321734 233321734 1 + G A ESCA 233321731 + 233321711 233321751 41 GCCCGCTTTAACCAGTGCAACACGACACGCGGCAATGAGGT GCCCGCTTTAACCAGTGCAACACAACACGCGGCAATGAGGT < 41bp 0.703085334404414 0.454217340613615 0.16418457 0.15420353 prediction 0.406170668808827 Functional Loss - ALPI ENSG00000163295 CDS Human protein_coding chr2:233321731 chr2:233321734 synonymous SNV . 0 24 hm5C_associated_SNPs_96133 0 0 1 0 1 ALPI chr2:233321783 5'GT 233321783 Upstream 50bp
chrX 14748392 14748392 1 + C T SKCM 14748389 + 14748369 14748409 41 GTTATGGGATGGGTCACTGCCTCCAAGTGAAAGATGGAACA GTTATGGGATGGGTCACTGCCTCTAAGTGAAAGATGGAACA < 41bp 0.810131625657816 0.607049261404111 0.96082234 0.92377996 prediction 0.40616472850741 Functional Loss - GLRA2 ENSG00000101958 CDS Human protein_coding chrX:14748389 chrX:14748392 stopgain 1.000 0 24 hm5C_associated_SNPs_96135 0 0 0 0 1 GLRA2 chrX:14748329 3'AG 14748329 Downstream 64bp
chr17 65665757 65665757 1 + G A LUAD 65665754 + 65665734 65665774 41 TGAGGTCTGGGGGCTTCAGACCAGAGTGGAACAATTTGTAC TGAGGTCTGGGGGCTTCAGACCAAAGTGGAACAATTTGTAC < 41bp 0.703082326971875 0.467709055929112 0.13465112 0.06604269 prediction 0.40616465394375 Functional Loss - PITPNC1 ENSG00000154217 CDS Human protein_coding chr17:65665754 chr17:65665757 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_96136 0 0 1 0 1 PITPNC1 chr17:65665779 5'GT 65665779 Upstream 23bp
chrX 37642769 37642769 1 + T C SARC 37642768 + 37642748 37642788 41 ACTGGCACTGGCCAGGGCCCCTGCAGCCTGCCTGAATTTCA ACTGGCACTGGCCAGGGCCCCCGCAGCCTGCCTGAATTTCA < 41bp 0.843007428461528 0.639925538490793 0.09409544 0.0474841 prediction 0.406163779941469 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37642768 chrX:37642769 synonymous SNV . 0 22 hm5C_associated_SNPs_96138 0 0 0 0 1 CYBB chrX:37642853 5'GT 37642853 Upstream 85bp
chr20 10277646 10277646 1 + C T COAD 10277644 + 10277624 10277664 41 AGTGGTGGCCAGCCAGCCTGCTCGTGTAGTGGACGAACGGG AGTGGTGGCCAGCCAGCCTGCTTGTGTAGTGGACGAACGGG < 41bp 0.86362436786353 0.660545725614108 0.33848682 0.35633028 prediction 0.406157284498843 Functional Loss - SNAP25 ENSG00000132639 CDS Human protein_coding chr20:10277644 chr20:10277646 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_96142 0 0 1 0 2 SNAP25 chr20:10277573 3'AG 10277573 Downstream 74bp
chr20 10277646 10277646 1 + C T COAD 10277644 + 10277624 10277664 41 AGTGGTGGCCAGCCAGCCTGCTCGTGTAGTGGACGAACGGG AGTGGTGGCCAGCCAGCCTGCTTGTGTAGTGGACGAACGGG < 41bp 0.86362436786353 0.660545725614108 0.33848682 0.35633028 prediction 0.406157284498843 Functional Loss - SNAP25 ENSG00000132639 CDS Human protein_coding chr20:10277644 chr20:10277646 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_96142 0 0 1 0 2 SNAP25 chr20:10277698 5'GT 10277698 Upstream 53bp
chr4 57897110 57897110 1 + G A BLCA 57897107 + 57897087 57897127 41 ACGCATGCAAACTATTGTTTCAGGAACTTATGTCTATGAGT ACGCATGCAAACTATTGTTTCAGAAACTTATGTCTATGAGT < 41bp 0.703073713620775 0.470747686840068 0.4402453 0.32639235 prediction 0.406147427241549 Functional Loss - POLR2B ENSG00000047315 CDS Human protein_coding chr4:57897107 chr4:57897110 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_96145 0 0 1 0 1 POLR2B chr4:57897065 3'AG 57897065 Downstream 46bp
chr16 21983356 21983356 1 + C T UCEC 21983354 + 21983334 21983374 41 TTAGTGTTCTTCAGCATGTCCTCGGTGCTGGGCCACATGTC TTAGTGTTCTTCAGCATGTCCTTGGTGCTGGGCCACATGTC < 41bp 0.879620772253623 0.676550427484763 0.37916163 0.3033003 prediction 0.40614068953772 Functional Loss - UQCRC2 ENSG00000140740 CDS Human protein_coding chr16:21983354 chr16:21983356 synonymous SNV . 0 23 hm5C_associated_SNPs_96147 0 0 1 0 1 UQCRC2 chr16:21983443 5'GT 21983443 Upstream 88bp
chr6 33372691 33372691 1 + G T LUAD 33372689 + 33372669 33372709 41 AAGCAGAGGTGGCATCTCTGCGGCAGGAGACTGTGGCCCAG AAGCAGAGGTGGCATCTCTGCGTCAGGAGACTGTGGCCCAG < 41bp 0.918745432104122 0.715678825843495 0.7272681 0.24421054 prediction 0.406133212521254 Functional Loss - KIFC1 ENSG00000237649 CDS Human protein_coding chr6:33372689 chr6:33372691 synonymous SNV . 0 23 hm5C_associated_SNPs_96155 0 0 1 0 1 KIFC1 chr6:33372629 3'AG 33372629 Downstream 63bp
chr16 613325 613325 1 + G T LUSC 613321 + 613301 613341 41 CGGGAGGCGGGCTCATGCCGCGTGGGCACAGGGGCGAGGGC CGGGAGGCGGGCTCATGCCGCGTGTGCACAGGGGCGAGGGC < 41bp 0.70306587128329 0.491896746345473 0.4372923 0.161466 prediction 0.40613174256658 Functional Loss - PRR35 ENSG00000161992 CDS Human protein_coding chr16:613321 chr16:613325 nonsynonymous SNV 0.007 3 25 hm5C_associated_SNPs_96156 0 0 0 0 1 PRR35 chr16:613256 3'AG 613256 Downstream 70bp
chr2 24239106 24239106 1 + C T BLCA 24239103 + 24239083 24239123 41 GCTGACCCTGTGGCTGGGTTCTTCATCAACAGGAGCCAGAG GCTGACCCTGTGGCTGGGTTCTTTATCAACAGGAGCCAGAG < 41bp 0.703065867666647 0.481460618671218 0.31048006 0.1656327 prediction 0.406131735333293 Functional Loss - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24239103 chr2:24239106 synonymous SNV . 0 24 hm5C_associated_SNPs_96157 0 0 1 1 2 MFSD2B chr2:24239026 3'AG 24239026 Downstream 81bp
chr2 24239106 24239106 1 + C T BLCA 24239103 + 24239083 24239123 41 GCTGACCCTGTGGCTGGGTTCTTCATCAACAGGAGCCAGAG GCTGACCCTGTGGCTGGGTTCTTTATCAACAGGAGCCAGAG < 41bp 0.703065867666647 0.481460618671218 0.31048006 0.1656327 prediction 0.406131735333293 Functional Loss - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24239103 chr2:24239106 synonymous SNV . 0 24 hm5C_associated_SNPs_96157 0 0 1 1 2 MFSD2B chr2:24239150 5'GT 24239150 Upstream 45bp
chr6 122744005 122744005 1 + A T LUAD 122744003 + 122743983 122744023 41 TGGCAGCAGCCCTCTCATGTCTAGTGCTGTCCAGCTAAATG TGGCAGCAGCCCTCTCATGTCTTGTGCTGTCCAGCTAAATG < 41bp 0.714686156139818 0.511620586163097 0.039637625 0.047569603 prediction 0.406131139953443 Functional Loss - HSF2 ENSG00000025156 CDS Human protein_coding chr6:122744003 chr6:122744005 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_96158 0 0 0 0 1 HSF2 chr6:122744102 5'GT 122744102 Upstream 98bp
chr20 31652621 31652621 1 + C T COAD 31652618 + 31652598 31652638 41 TTTGGACTCCTGCAGACCAACGGCGCCCTCGACATGGACAT TTTGGACTCCTGCAGACCAACGGTGCCCTCGACATGGACAT < 41bp 0.719246072443674 0.516181427923264 0.08855033 0.05605036 prediction 0.406129289040821 Functional Loss - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31652618 chr20:31652621 synonymous SNV . 0 24 hm5C_associated_SNPs_96159 0 0 0 0 1 BPIFB3 chr20:31652651 5'GT 31652651 Upstream 31bp
chr19 36394805 36394805 1 + G A rs200170675 36394802 + 36394782 36394822 41 GCCCACGCCGCAGCCCCGCCCAAGGTGAGGGCGGAGATGGG GCCCACGCCGCAGCCCCGCCCAAAGTGAGGGCGGAGATGGG < 41bp 0.822984723942561 0.619920952157678 0.89478797 0.3665689 prediction 0.406127543569765 Functional Loss - HCST ENSG00000126264 CDS Human protein_coding chr19:36394802 chr19:36394805 nonsynonymous SNV 0.837 2 24 hm5C_associated_SNPs_96161 0 0 0 0 1 HCST chr19:36394805 5'GT 36394805 Upstream 1bp
chr2 162751283 162751283 1 + G A SKCM 162751280 + 162751260 162751300 41 TCAGGTTACTGTTCTCCCTCCTGGAGAATGGGATCCAAGCA TCAGGTTACTGTTCTCCCTCCTGAAGAATGGGATCCAAGCA < 41bp 0.703060274349246 0.466263212668411 0.10678768 0.035886645 prediction 0.406120548698492 Functional Loss - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162751280 chr2:162751283 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_96163 0 0 0 2 2 SLC4A10 chr2:162751189 3'AG 162751189 Downstream 95bp
chr2 162751283 162751283 1 + G A SKCM 162751280 + 162751260 162751300 41 TCAGGTTACTGTTCTCCCTCCTGGAGAATGGGATCCAAGCA TCAGGTTACTGTTCTCCCTCCTGAAGAATGGGATCCAAGCA < 41bp 0.703060274349246 0.466263212668411 0.10678768 0.035886645 prediction 0.406120548698492 Functional Loss - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162751280 chr2:162751283 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_96163 0 0 0 2 2 SLC4A10 chr2:162751335 5'GT 162751335 Upstream 53bp
chr3 16237372 16237372 1 + C T rs9833671 16237370 + 16237350 16237390 41 TGCGGACTGTACACAGCATCCTCGACACAGTGCCCAGGGCC TGCGGACTGTACACAGCATCCTTGACACAGTGCCCAGGGCC < 41bp 0.882296916844016 0.679236969635279 0.1121386 0.0847725 prediction 0.406119894417474 Functional Loss - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16237370 chr3:16237372 synonymous SNV . 0 23 hm5C_associated_SNPs_96164 0 0 0 0 1 GALNT15 chr3:16237433 5'GT 16237433 Upstream 62bp
chr4 156726271 156726271 1 + G T COAD 156726269 + 156726249 156726289 41 TTTTAGATGTCTTATGTCTCCAGAAAATTCAGATCCACAAT TTTTAGATGTCTTATGTCTCCATAAAATTCAGATCCACAAT < 41bp 0.703057562200127 0.366277254146828 0.14203939 0.026275784 prediction 0.406115124400254 Functional Loss - GUCY1B3 ENSG00000061918 CDS Human protein_coding chr4:156726269 chr4:156726271 stopgain 0.997 1 23 hm5C_associated_SNPs_96167 0 0 0 0 1 GUCY1B3 chr4:156726255 3'AG 156726255 Downstream 17bp
chr4 123329146 123329146 1 + G A CESC 123329143 + 123329123 123329163 41 AGCCAGATGGAAGAGTATTGCATGACACTCATGCTGTTGTT AGCCAGATGGAAGAGTATTGCATAACACTCATGCTGTTGTT < 41bp 0.703053453934671 0.466276413996449 0.5675795 0.2967831 prediction 0.406106907869342 Functional Loss - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123329143 chr4:123329146 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_96169 0 0 0 0 2 ADAD1 chr4:123329063 3'AG 123329063 Downstream 84bp
chr4 123329146 123329146 1 + G A CESC 123329143 + 123329123 123329163 41 AGCCAGATGGAAGAGTATTGCATGACACTCATGCTGTTGTT AGCCAGATGGAAGAGTATTGCATAACACTCATGCTGTTGTT < 41bp 0.703053453934671 0.466276413996449 0.5675795 0.2967831 prediction 0.406106907869342 Functional Loss - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123329143 chr4:123329146 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_96169 0 0 0 0 2 ADAD1 chr4:123329186 5'GT 123329186 Upstream 41bp
chr19 39915878 39915878 1 + G A SKCM 39915875 + 39915855 39915895 41 CTGCTCTCTTGGCCTCCACACAGGAATCTATGGGCCTTCAC CTGCTCTCTTGGCCTCCACACAGAAATCTATGGGCCTTCAC < 41bp 0.825812498461139 0.622760341381428 0.9063036 0.29406315 prediction 0.406104314159423 Functional Loss - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39915875 chr19:39915878 nonsynonymous SNV 0.174 0 24 hm5C_associated_SNPs_96171 0 0 1 0 1 PLEKHG2 chr19:39915878 3'AG 39915878 Downstream 1bp
chr20 62373570 62373570 1 + C T LIHC 62373567 + 62373547 62373587 41 CGGCGATGCAGAGACACATCCGCCTGGTGCACCTGGGGTGC CGGCGATGCAGAGACACATCCGCTTGGTGCACCTGGGGTGC < 41bp 0.720495234884983 0.517444911443564 0.3812037 0.27958745 prediction 0.40610064688284 Functional Loss - SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62373567 chr20:62373570 synonymous SNV . 0 24 hm5C_associated_SNPs_96172 0 0 1 0 2 SLC2A4RG chr20:62373483 3'AG 62373483 Downstream 88bp
chr20 62373570 62373570 1 + C T LIHC 62373567 + 62373547 62373587 41 CGGCGATGCAGAGACACATCCGCCTGGTGCACCTGGGGTGC CGGCGATGCAGAGACACATCCGCTTGGTGCACCTGGGGTGC < 41bp 0.720495234884983 0.517444911443564 0.3812037 0.27958745 prediction 0.40610064688284 Functional Loss - SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62373567 chr20:62373570 synonymous SNV . 0 24 hm5C_associated_SNPs_96172 0 0 1 0 2 SLC2A4RG chr20:62373583 5'GT 62373583 Upstream 14bp
chr1 104160207 104160207 1 + C T BLCA 104160205 + 104160185 104160225 41 TGAATGTGAGCGATATTTAGCTCCGAAGGGATTTGGAGGGG TGAATGTGAGCGATATTTAGCTTCGAAGGGATTTGGAGGGG < 41bp 0.703050249654182 0.440482260239303 0.16996658 0.13122761 prediction 0.406100499308365 Functional Loss - AMY2A ENSG00000243480 CDS Human protein_coding chr1:104160205 chr1:104160207 nonsynonymous SNV 0.524 5 23 hm5C_associated_SNPs_96173 0 0 0 0 1 AMY2A chr1:104160230 5'GT 104160230 Upstream 24bp
chr11 46332703 46332703 1 + C T rs192179218 46332701 + 46332681 46332721 41 AGGCCCATGGCGCGCTCCTCCACGGCCATCTCCACCTCCCC AGGCCCATGGCGCGCTCCTCCATGGCCATCTCCACCTCCCC < 41bp 0.843780803350134 0.640731995171677 0.32335746 0.21777073 prediction 0.406097616356915 Functional Loss - CREB3L1 ENSG00000157613 CDS Human protein_coding chr11:46332701 chr11:46332703 nonsynonymous SNV 0.991 1 23 hm5C_associated_SNPs_96176 0 0 0 0 1 CREB3L1 chr11:46332740 5'GT 46332740 Upstream 38bp
chrX 67938433 67938433 1 + C T BRCA 67938431 + 67938411 67938451 41 CATCAATGCCCCGTGAACGGCGCGATTCAGGTGTTGGGGCC CATCAATGCCCCGTGAACGGCGTGATTCAGGTGTTGGGGCC < 41bp 0.854546883998312 0.65149951034683 0.5308773 0.8288672 prediction 0.406094747302965 Functional Loss - STARD8 ENSG00000130052 CDS Human protein_coding chrX:67938431 chrX:67938433 synonymous SNV . 0 23 hm5C_associated_SNPs_96178 0 0 0 0 1 STARD8 chrX:67938471 5'GT 67938471 Upstream 39bp
chr16 89289672 89289672 1 + C T LUSC 89289669 + 89289649 89289689 41 AGAGATGTGATGCTGGAAAACTACGAGAACCTGGCCTCAGT AGAGATGTGATGCTGGAAAACTATGAGAACCTGGCCTCAGT < 41bp 0.703042015548525 0.479359384622351 0.2681738 0.3261037 prediction 0.40608403109705 Functional Loss - ZNF778 ENSG00000170100 CDS Human protein_coding chr16:89289669 chr16:89289672 synonymous SNV . 0 24 hm5C_associated_SNPs_96182 0 0 1 0 1 ZNF778 chr16:89289691 5'GT 89289691 Upstream 20bp
chr10 129536033 129536033 1 + G A BLCA 129536030 + 129536010 129536050 41 ACTGCTTCAAGAAGGTGCCCCGCGACGAGGACGACCCAGGT ACTGCTTCAAGAAGGTGCCCCGCAACGAGGACGACCCAGGT < 41bp 0.822482822605037 0.619441292308806 0.23121235 0.13674873 prediction 0.406083060592461 Functional Loss - FOXI2 ENSG00000186766 CDS Human protein_coding chr10:129536030 chr10:129536033 nonsynonymous SNV 0.984 5 24 hm5C_associated_SNPs_96183 0 0 0 0 1 FOXI2 chr10:129536048 5'GT 129536048 Upstream 16bp
chr9 136522304 136522304 1 - G A GBM 136522306 - 136522286 136522326 41 TTGCAGTGCATGGAGATGGGCGCGAAGCTGTACAGGGCCTT TTGCAGTGCATGGAGATGGGCGTGAAGCTGTACAGGGCCTT < 41bp 0.845333141614391 0.642293247343091 0.8842373 0.8834338 prediction 0.4060797885426 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136522306 chr9:136522304 nonsynonymous SNV 0.003 3 23 hm5C_associated_SNPs_96185 0 0 0 0 1 DBH chr9:136522249 5'GT 136522249 Upstream 56bp
chr17 72345450 72345450 1 + G A rs201490676 72345447 + 72345427 72345467 41 GCAGACTGGGCGGGGCCAGGCCCGGGGCCGGCAGGATCGGG GCAGACTGGGCGGGGCCAGGCCCAGGGCCGGCAGGATCGGG < 41bp 0.703033916937175 0.442905210097123 0.45154908 0.26591003 prediction 0.40606783387435 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72345447 chr17:72345450 nonsynonymous SNV 0.966 0 24 hm5C_associated_SNPs_96190 0 0 0 0 1 KIF19 chr17:72345488 5'GT 72345488 Upstream 39bp
chr17 72345451 72345451 1 + G T LUAD 72345447 + 72345427 72345467 41 GCAGACTGGGCGGGGCCAGGCCCGGGGCCGGCAGGATCGGG GCAGACTGGGCGGGGCCAGGCCCGTGGCCGGCAGGATCGGG < 41bp 0.703033916937175 0.489966091183133 0.45154908 0.4063444 prediction 0.40606783387435 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72345447 chr17:72345451 synonymous SNV . 0 25 hm5C_associated_SNPs_96191 0 0 0 0 1 KIF19 chr17:72345488 5'GT 72345488 Upstream 38bp
chr15 74178913 74178913 1 + G T HNSC 74178909 + 74178889 74178929 41 CCTGGTTCTGCTTCTGCTTCCAGCGTGCCTTCAAGTCCTTC CCTGGTTCTGCTTCTGCTTCCAGCTTGCCTTCAAGTCCTTC < 41bp 0.73188592767913 0.528852608157655 0.24074891 0.15345198 prediction 0.406066639042949 Functional Loss - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74178909 chr15:74178913 nonsynonymous SNV 0.939 1 25 hm5C_associated_SNPs_96192 0 0 0 0 2 TBC1D21 chr15:74178853 3'AG 74178853 Downstream 61bp
chr15 74178913 74178913 1 + G T HNSC 74178909 + 74178889 74178929 41 CCTGGTTCTGCTTCTGCTTCCAGCGTGCCTTCAAGTCCTTC CCTGGTTCTGCTTCTGCTTCCAGCTTGCCTTCAAGTCCTTC < 41bp 0.73188592767913 0.528852608157655 0.24074891 0.15345198 prediction 0.406066639042949 Functional Loss - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74178909 chr15:74178913 nonsynonymous SNV 0.939 1 25 hm5C_associated_SNPs_96192 0 0 0 0 2 TBC1D21 chr15:74178953 5'GT 74178953 Upstream 41bp
chr1 156142715 156142715 1 + T C GBM 156142714 + 156142694 156142734 41 GACGCCCCTGCTGGTGAAATCTGGCGTGGAGTATACACGGC GACGCCCCTGCTGGTGAAATCCGGCGTGGAGTATACACGGC < 41bp 0.825600241001117 0.622567113230754 0.7454902 0.90535665 prediction 0.406066255540725 Functional Loss - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156142714 chr1:156142715 synonymous SNV . 0 22 hm5C_associated_SNPs_96193 0 0 0 0 2 SEMA4A chr1:156142617 3'AG 156142617 Downstream 99bp
chr1 156142715 156142715 1 + T C GBM 156142714 + 156142694 156142734 41 GACGCCCCTGCTGGTGAAATCTGGCGTGGAGTATACACGGC GACGCCCCTGCTGGTGAAATCCGGCGTGGAGTATACACGGC < 41bp 0.825600241001117 0.622567113230754 0.7454902 0.90535665 prediction 0.406066255540725 Functional Loss - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156142714 chr1:156142715 synonymous SNV . 0 22 hm5C_associated_SNPs_96193 0 0 0 0 2 SEMA4A chr1:156142797 5'GT 156142797 Upstream 83bp
chr5 148699178 148699178 1 + G A COAD 148699175 + 148699155 148699195 41 CAGAGGACATGGGTCGCTGGCTCGGGCTGCTGCTGGTGGAG CAGAGGACATGGGTCGCTGGCTCAGGCTGCTGCTGGTGGAG < 41bp 0.834464829189627 0.631432419766201 0.3446955 0.30368015 prediction 0.406064818846853 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148699175 chr5:148699178 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_96195 0 0 0 0 1 AFAP1L1 chr5:148699145 3'AG 148699145 Downstream 34bp
chr17 79988573 79988573 1 + G C LIHC 79988569 + 79988549 79988589 41 GAAGCTGCGGCTCCGGGAGGCGGAGATCGCCCGCATCCGGG GAAGCTGCGGCTCCGGGAGGCGGACATCGCCCGCATCCGGG < 41bp 0.70303150853873 0.414543856368137 0.9369854 0.9262943 prediction 0.406063017077459 Functional Loss - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79988569 chr17:79988573 nonsynonymous SNV 0.980 1 25 hm5C_associated_SNPs_96196 0 0 1 0 1 LRRC45 chr17:79988485 3'AG 79988485 Downstream 89bp
chr7 142961653 142961653 1 + C T SKCM 142961650 + 142961630 142961670 41 TCTCCTGGCAGGAAACAAGCCTCCAGGTCTGCTTCCCCGCA TCTCCTGGCAGGAAACAAGCCTCTAGGTCTGCTTCCCCGCA < 41bp 0.794789944148014 0.591759263495273 0.9337709 0.5936976 prediction 0.406061361305482 Functional Loss - GSTK1 ENSG00000197448 CDS Human protein_coding chr7:142961650 chr7:142961653 nonsynonymous SNV 0.088 4 24 hm5C_associated_SNPs_96197 0 0 1 0 1 GSTK1 chr7:142961641 3'AG 142961641 Downstream 13bp
chr5 1036435 1036435 1 + G A rs73026757 1036432 + 1036412 1036452 41 CCCTACTGCGTGGACGAGAACACGGAGCGCAGAAACCACTA CCCTACTGCGTGGACGAGAACACAGAGCGCAGAAACCACTA < 41bp 0.80343791641613 0.600410503063365 0.8196712 0.3533688 prediction 0.40605482670553 Functional Loss - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036432 chr5:1036435 synonymous SNV . 0 24 hm5C_associated_SNPs_96200 0 0 0 0 2 NKD2 chr5:1036372 3'AG 1036372 Downstream 64bp
chr5 1036435 1036435 1 + G A rs73026757 1036432 + 1036412 1036452 41 CCCTACTGCGTGGACGAGAACACGGAGCGCAGAAACCACTA CCCTACTGCGTGGACGAGAACACAGAGCGCAGAAACCACTA < 41bp 0.80343791641613 0.600410503063365 0.8196712 0.3533688 prediction 0.40605482670553 Functional Loss - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036432 chr5:1036435 synonymous SNV . 0 24 hm5C_associated_SNPs_96200 0 0 0 0 2 NKD2 chr5:1036499 5'GT 1036499 Upstream 65bp
chr1 45808537 45808537 1 + C T STAD 45808534 + 45808514 45808554 41 GTGAACGGGAAAATGGGAAGCAGCGGGCAGCTGGCAGCCCA GTGAACGGGAAAATGGGAAGCAGTGGGCAGCTGGCAGCCCA < 41bp 0.726634743354605 0.523607449691693 0.75553095 0.7831091 prediction 0.406054587325824 Functional Loss - TOE1 ENSG00000132773 CDS Human protein_coding chr1:45808534 chr1:45808537 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_96201 0 0 1 1 1 TOE1 chr1:45808515 3'AG 45808515 Downstream 23bp
chr11 722413 722413 1 + T C COAD 722412 + 722392 722432 41 GTGCCCCAGATCGTCAACACCTGCAGTGGCCCAGACATCGC GTGCCCCAGATCGTCAACACCCGCAGTGGCCCAGACATCGC < 41bp 0.851644522423932 0.648620844514928 0.25488514 0.1468989 prediction 0.406047355818006 Functional Loss - EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722412 chr11:722413 nonsynonymous SNV 0.084 2 22 hm5C_associated_SNPs_96203 0 0 1 0 1 EPS8L2 chr11:722401 3'AG 722401 Downstream 13bp
chr1 19983382 19983382 1 + C T rs139196947 19983380 + 19983360 19983400 41 TGACGCTGGAGTGCCCGGGCCACGAGGAGGTGCCCAGGGTG TGACGCTGGAGTGCCCGGGCCATGAGGAGGTGCCCAGGGTG < 41bp 0.853637925090519 0.650614284592201 0.71785057 0.77657235 prediction 0.406047280996635 Functional Loss - MINOS1-NBL1;NBL1 ENSG00000158747;ENSG00000270136 CDS Human other chr1:19983380 chr1:19983382 synonymous SNV . 0 23 hm5C_associated_SNPs_96204 0 0 1 0 1 MINOS1-NBL1;NBL1 chr1:19983359 3'AG 19983359 Downstream 24bp
chr19 14029589 14029589 1 + C T UCEC 14029586 + 14029566 14029606 41 GCCCCCAGACCCACCGTCACCACCGTCGCAGCCTCCGACCC GCCCCCAGACCCACCGTCACCACTGTCGCAGCCTCCGACCC < 41bp 0.72703528280706 0.524012532735604 0.15016639 0.14116877 prediction 0.406045500142912 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14029586 chr19:14029589 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_96205 0 0 0 0 2 CC2D1A chr19:14029559 3'AG 14029559 Downstream 31bp
chr19 14029589 14029589 1 + C T UCEC 14029586 + 14029566 14029606 41 GCCCCCAGACCCACCGTCACCACCGTCGCAGCCTCCGACCC GCCCCCAGACCCACCGTCACCACTGTCGCAGCCTCCGACCC < 41bp 0.72703528280706 0.524012532735604 0.15016639 0.14116877 prediction 0.406045500142912 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14029586 chr19:14029589 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_96205 0 0 0 0 2 CC2D1A chr19:14029630 5'GT 14029630 Upstream 42bp
chr3 44943341 44943341 1 + G A UCEC 44943338 + 44943318 44943358 41 TGACAGGCTTCGATTCAGCTCACGACACAGAAAGGAACCTC TGACAGGCTTCGATTCAGCTCACAACACAGAAAGGAACCTC < 41bp 0.802097024578098 0.599075277093276 0.029891968 0.02700463 prediction 0.406043494969644 Functional Loss - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44943338 chr3:44943341 nonsynonymous SNV 0.004 3 24 hm5C_associated_SNPs_96206 0 0 0 0 2 TGM4 chr3:44943285 3'AG 44943285 Downstream 57bp
chr3 44943341 44943341 1 + G A UCEC 44943338 + 44943318 44943358 41 TGACAGGCTTCGATTCAGCTCACGACACAGAAAGGAACCTC TGACAGGCTTCGATTCAGCTCACAACACAGAAAGGAACCTC < 41bp 0.802097024578098 0.599075277093276 0.029891968 0.02700463 prediction 0.406043494969644 Functional Loss - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44943338 chr3:44943341 nonsynonymous SNV 0.004 3 24 hm5C_associated_SNPs_96206 0 0 0 0 2 TGM4 chr3:44943423 5'GT 44943423 Upstream 83bp
chr2 207814383 207814383 1 + G T LUAD 207814379 + 207814359 207814399 41 ACAAGAGATTGTGGACAAGTCAGTGAGTCCATGGAGCCTGG ACAAGAGATTGTGGACAAGTCAGTTAGTCCATGGAGCCTGG < 41bp 0.716589674323924 0.513568417185056 0.13096628 0.07907733 prediction 0.406042514277735 Functional Loss - CPO ENSG00000144410 CDS Human protein_coding chr2:207814379 chr2:207814383 synonymous SNV . 0 25 hm5C_associated_SNPs_96209 0 0 0 0 2 CPO chr2:207814341 3'AG 207814341 Downstream 43bp
chr2 207814383 207814383 1 + G T LUAD 207814379 + 207814359 207814399 41 ACAAGAGATTGTGGACAAGTCAGTGAGTCCATGGAGCCTGG ACAAGAGATTGTGGACAAGTCAGTTAGTCCATGGAGCCTGG < 41bp 0.716589674323924 0.513568417185056 0.13096628 0.07907733 prediction 0.406042514277735 Functional Loss - CPO ENSG00000144410 CDS Human protein_coding chr2:207814379 chr2:207814383 synonymous SNV . 0 25 hm5C_associated_SNPs_96209 0 0 0 0 2 CPO chr2:207814437 5'GT 207814437 Upstream 55bp
chr11 66329639 66329639 1 + G A rs77239910 66329636 + 66329616 66329656 41 GCATCCTTCAACCACTTTGACAGGGTCAGCAGGGGCCTGGC GCATCCTTCAACCACTTTGACAGAGTCAGCAGGGGCCTGGC < 41bp 0.70831371186216 0.505292756787893 0.9104911 0.83147264 prediction 0.406041910148535 Functional Loss - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66329636 chr11:66329639 unknown . 0 24 hm5C_associated_SNPs_96210 0 0 0 0 1 ACTN3 chr11:66329639 3'AG 66329639 Downstream 1bp
chr2 70123608 70123608 1 + C T BLCA 70123606 + 70123586 70123626 41 ATCCACATCTCCTTCCCCTTCTCGACTGAAAGAAAGAAGAG ATCCACATCTCCTTCCCCTTCTTGACTGAAAGAAAGAAGAG < 41bp 0.879961908348334 0.676941172159998 0.21400064 0.055042326 prediction 0.406041472376673 Functional Loss - SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70123606 chr2:70123608 stopgain 1.000 1 23 hm5C_associated_SNPs_96211 0 0 1 0 2 SNRNP27 chr2:70123568 3'AG 70123568 Downstream 41bp
chr2 70123608 70123608 1 + C T BLCA 70123606 + 70123586 70123626 41 ATCCACATCTCCTTCCCCTTCTCGACTGAAAGAAAGAAGAG ATCCACATCTCCTTCCCCTTCTTGACTGAAAGAAAGAAGAG < 41bp 0.879961908348334 0.676941172159998 0.21400064 0.055042326 prediction 0.406041472376673 Functional Loss - SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70123606 chr2:70123608 stopgain 1.000 1 23 hm5C_associated_SNPs_96211 0 0 1 0 2 SNRNP27 chr2:70123680 5'GT 70123680 Upstream 73bp
chr17 8159873 8159873 1 + C T GBM 8159870 + 8159850 8159890 41 AGGGAAAGGAAGTCCGATTCCTACGGCCTGAGGACCCCACA AGGGAAAGGAAGTCCGATTCCTATGGCCTGAGGACCCCACA < 41bp 0.703017860741398 0.478456729386988 0.13442561 0.17329353 prediction 0.406035721482797 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8159870 chr17:8159873 nonsynonymous SNV 0.480 0 24 hm5C_associated_SNPs_96214 0 0 1 0 2 PFAS chr17:8159842 3'AG 8159842 Downstream 32bp
chr17 8159873 8159873 1 + C T GBM 8159870 + 8159850 8159890 41 AGGGAAAGGAAGTCCGATTCCTACGGCCTGAGGACCCCACA AGGGAAAGGAAGTCCGATTCCTATGGCCTGAGGACCCCACA < 41bp 0.703017860741398 0.478456729386988 0.13442561 0.17329353 prediction 0.406035721482797 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8159870 chr17:8159873 nonsynonymous SNV 0.480 0 24 hm5C_associated_SNPs_96214 0 0 1 0 2 PFAS chr17:8159966 5'GT 8159966 Upstream 94bp
chr20 61468561 61468561 1 + G A LUAD 61468558 + 61468538 61468578 41 CTCCATTGGTCACCCTGGCGCTCGAGGACCCCCTGGATACC CTCCATTGGTCACCCTGGCGCTCAAGGACCCCCTGGATACC < 41bp 0.82782544386994 0.624810119899981 0.081567585 0.04193577 prediction 0.406030647939919 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61468558 chr20:61468561 nonsynonymous SNV 0.482 4 24 hm5C_associated_SNPs_96216 0 0 1 0 1 COL9A3 chr20:61468617 5'GT 61468617 Upstream 57bp
chr4 106766627 106766627 1 + G A COAD 106766624 + 106766604 106766644 41 AGTGCATGTGCTTGGTGGATCTGGATCGAGCAAGAGCTGCA AGTGCATGTGCTTGGTGGATCTGAATCGAGCAAGAGCTGCA < 41bp 0.789315585847641 0.586301525109635 0.13410065 0.07898867 prediction 0.406028121476012 Functional Loss - GSTCD ENSG00000138780 CDS Human protein_coding chr4:106766624 chr4:106766627 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_96218 0 0 1 0 1 GSTCD chr4:106766598 3'AG 106766598 Downstream 30bp
chrX 10181808 10181808 1 + C T COAD 10181805 + 10181785 10181825 41 GTACATCGTGCCCCTGATGGCGGCGGCTGTGACCAGCAAGT GTACATCGTGCCCCTGATGGCGGTGGCTGTGACCAGCAAGT < 41bp 0.742831120012956 0.539820346206251 0.7854401 0.3879181 prediction 0.40602154761341 Functional Loss - CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10181805 chrX:10181808 nonsynonymous SNV 0.023 3 24 hm5C_associated_SNPs_96221 2 0 0 0 1 CLCN4 chrX:10181721 3'AG 10181721 Downstream 88bp
chr12 10217396 10217396 1 + G C KIRC 10217392 + 10217372 10217412 41 TGATTACTGGGTGGGGTTGTCTCAGGATGGACACAGCGGAC TGATTACTGGGTGGGGTTGTCTCACGATGGACACAGCGGAC < 41bp 0.876304926899076 0.673296982690999 0.41043535 0.28999734 prediction 0.406015888416156 Functional Loss - CLEC9A ENSG00000197992 CDS Human protein_coding chr12:10217392 chr12:10217396 nonsynonymous SNV 0.020 2 25 hm5C_associated_SNPs_96223 0 0 0 0 2 CLEC9A chr12:10217331 3'AG 10217331 Downstream 66bp
chr12 10217396 10217396 1 + G C KIRC 10217392 + 10217372 10217412 41 TGATTACTGGGTGGGGTTGTCTCAGGATGGACACAGCGGAC TGATTACTGGGTGGGGTTGTCTCACGATGGACACAGCGGAC < 41bp 0.876304926899076 0.673296982690999 0.41043535 0.28999734 prediction 0.406015888416156 Functional Loss - CLEC9A ENSG00000197992 CDS Human protein_coding chr12:10217392 chr12:10217396 nonsynonymous SNV 0.020 2 25 hm5C_associated_SNPs_96223 0 0 0 0 2 CLEC9A chr12:10217452 5'GT 10217452 Upstream 57bp
chr19 56388468 56388468 1 + G T UCEC 56388464 + 56388444 56388484 41 CAAATTGGGTGCAATGAAATCGGAGATGTGGGTGTGCAGCT CAAATTGGGTGCAATGAAATCGGATATGTGGGTGTGCAGCT < 41bp 0.703007786107761 0.498578749531479 0.9044596 0.8644359 prediction 0.406015572215522 Functional Loss - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56388464 chr19:56388468 nonsynonymous SNV 0.004 3 25 hm5C_associated_SNPs_96224 0 0 0 0 1 NLRP4 chr19:56388532 5'GT 56388532 Upstream 65bp
chrX 30739058 30739058 1 + G T HNSC 30739056 + 30739036 30739076 41 CGGCGTATGGAGTCTCGAACCCGAGGATTTGTCTGCCGTCA CGGCGTATGGAGTCTCGAACCCTAGGATTTGTCTGCCGTCA < 41bp 0.703003639605535 0.346587762333307 0.4582155 0.075992644 prediction 0.40600727921107 Functional Loss - GK ENSG00000198814 CDS Human protein_coding chrX:30739056 chrX:30739058 stopgain 0.896 1 23 hm5C_associated_SNPs_96226 0 0 0 0 1 GK chrX:30738969 3'AG 30738969 Downstream 90bp
chr11 124743680 124743680 1 + A T UCEC 124743678 + 124743658 124743698 41 CCAGTGGTCACTGAGATCACCAAGAACAGCATTACCCTGAC CCAGTGGTCACTGAGATCACCATGAACAGCATTACCCTGAC < 41bp 0.739501804347541 0.536499051216605 0.32077736 0.17523557 prediction 0.406005506261873 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124743678 chr11:124743680 nonsynonymous SNV 0.963 3 23 hm5C_associated_SNPs_96227 0 0 0 0 2 ROBO3 chr11:124743593 3'AG 124743593 Downstream 88bp
chr11 124743680 124743680 1 + A T UCEC 124743678 + 124743658 124743698 41 CCAGTGGTCACTGAGATCACCAAGAACAGCATTACCCTGAC CCAGTGGTCACTGAGATCACCATGAACAGCATTACCCTGAC < 41bp 0.739501804347541 0.536499051216605 0.32077736 0.17523557 prediction 0.406005506261873 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124743678 chr11:124743680 nonsynonymous SNV 0.963 3 23 hm5C_associated_SNPs_96227 0 0 0 0 2 ROBO3 chr11:124743758 5'GT 124743758 Upstream 79bp
chr8 27516983 27516983 1 + C T ACC 27516980 + 27516960 27517000 41 GACCTCAACGTCCGGAACCTCTCCATGATCGTGGAGGAGAT GACCTCAACGTCCGGAACCTCTCTATGATCGTGGAGGAGAT < 41bp 0.809695712387443 0.606693337993129 0.97107345 0.94265443 prediction 0.406004748788628 Functional Loss - SCARA3 ENSG00000168077 CDS Human protein_coding chr8:27516980 chr8:27516983 synonymous SNV . 0 24 hm5C_associated_SNPs_96228 0 0 1 0 1 SCARA3 chr8:27517056 5'GT 27517056 Upstream 74bp
chr20 3725572 3725572 1 + G T SARC 3725568 + 3725548 3725588 41 GGAAATGGGAGGGCGGAGACCCGGGCGTGGCCCACCAGAAG GGAAATGGGAGGGCGGAGACCCGGTCGTGGCCCACCAGAAG < 41bp 0.743566967911422 0.540564657116133 0.9175388 0.76530606 prediction 0.406004621590578 Functional Loss - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3725568 chr20:3725572 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_96229 0 0 0 0 1 HSPA12B chr20:3725549 3'AG 3725549 Downstream 24bp
chr8 42173805 42173805 1 + C T STAD 42173803 + 42173783 42173823 41 CGACAGAGGGGCACGGATCCCACGTATGGGCCCAATGGCTG CGACAGAGGGGCACGGATCCCATGTATGGGCCCAATGGCTG < 41bp 0.845446783539812 0.64244533088416 0.18095315 0.34930366 prediction 0.406002905311305 Functional Loss - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42173803 chr8:42173805 nonsynonymous SNV 0.018 0 23 hm5C_associated_SNPs_96230 0 0 1 0 1 IKBKB chr8:42173857 5'GT 42173857 Upstream 53bp
chr4 68424576 68424576 1 + G A SKCM 68424573 + 68424553 68424593 41 CAGCCCCTCGCAGGATCTTCCAGGAAAGGTTAAAGATTACT CAGCCCCTCGCAGGATCTTCCAGAAAAGGTTAAAGATTACT < 41bp 0.781186886739214 0.578187945161876 0.8628509 0.48026037 prediction 0.405997883154676 Functional Loss - STAP1 ENSG00000035720 CDS Human protein_coding chr4:68424573 chr4:68424576 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_96232 0 0 0 0 1 STAP1 chr4:68424647 5'GT 68424647 Upstream 72bp
chr7 150068382 150068382 1 + C T UCEC 150068380 + 150068360 150068400 41 GGCCATGGGCCTGGCCCAGCCCCGACTCCTTTCTGGGCCCT GGCCATGGGCCTGGCCCAGCCCTGACTCCTTTCTGGGCCCT < 41bp 0.829368285890427 0.626374043895963 0.33489168 0.22400343 prediction 0.405988483988929 Functional Loss - REPIN1 ENSG00000214022 CDS Human protein_coding chr7:150068380 chr7:150068382 stopgain 0.514 0 23 hm5C_associated_SNPs_96235 0 0 1 0 1 REPIN1 chr7:150068317 3'AG 150068317 Downstream 66bp
chr2 42522583 42522583 1 + T C LAML 42522582 + 42522562 42522602 41 GGGGAATGGAGATGTTCTTACTGGAGACTCAGGTGGAGTCA GGGGAATGGAGATGTTCTTACCGGAGACTCAGGTGGAGTCA < 41bp 0.835062148393507 0.632068733038454 0.7294077 0.9043445 prediction 0.405986830710106 Functional Loss - EML4 ENSG00000143924 CDS Human protein_coding chr2:42522582 chr2:42522583 synonymous SNV . 0 22 hm5C_associated_SNPs_96236 0 0 1 0 2 EML4 chr2:42522521 3'AG 42522521 Downstream 63bp
chr2 42522583 42522583 1 + T C LAML 42522582 + 42522562 42522602 41 GGGGAATGGAGATGTTCTTACTGGAGACTCAGGTGGAGTCA GGGGAATGGAGATGTTCTTACCGGAGACTCAGGTGGAGTCA < 41bp 0.835062148393507 0.632068733038454 0.7294077 0.9043445 prediction 0.405986830710106 Functional Loss - EML4 ENSG00000143924 CDS Human protein_coding chr2:42522582 chr2:42522583 synonymous SNV . 0 22 hm5C_associated_SNPs_96236 0 0 1 0 2 EML4 chr2:42522656 5'GT 42522656 Upstream 74bp
chr7 102065499 102065499 1 + G T LUAD 102065497 + 102065477 102065517 41 GGAGCAGGGGTCCAGCAGCTCTGCGGAGGCATCTGGAACAG GGAGCAGGGGTCCAGCAGCTCTTCGGAGGCATCTGGAACAG < 41bp 0.904698585107869 0.701705344120386 0.50386316 0.22087714 prediction 0.405986481974967 Functional Loss - PRKRIP1 ENSG00000128563 CDS Human protein_coding chr7:102065497 chr7:102065499 nonsynonymous SNV 0.730 0 23 hm5C_associated_SNPs_96237 0 0 1 0 1 PRKRIP1 chr7:102065461 3'AG 102065461 Downstream 39bp
chr6 70890390 70890390 1 + G T LUAD 70890387 + 70890367 70890407 41 TGTTGGAGATATAGGTTTCCCTGGACCAGAAGGACCCTCAG TGTTGGAGATATAGGTTTCCCTGTACCAGAAGGACCCTCAG < 41bp 0.702991329970596 0.337657881337339 0.34548333 0.23788092 prediction 0.405982659941193 Functional Loss - COL19A1 ENSG00000082293 CDS Human protein_coding chr6:70890387 chr6:70890390 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_96238 0 0 0 0 1 COL19A1 chr6:70890415 5'GT 70890415 Upstream 26bp
chr19 35660502 35660502 1 + G T HNSC 35660500 + 35660480 35660520 41 AGGCAGCTGTCCCGGTTATGCCGGAATCGTTGCAGGTGAGT AGGCAGCTGTCCCGGTTATGCCTGAATCGTTGCAGGTGAGT < 41bp 0.702990919561089 0.360113742487713 0.6639625 0.19020921 prediction 0.405981839122177 Functional Loss - FXYD5 ENSG00000089327 CDS Human protein_coding chr19:35660500 chr19:35660502 nonsynonymous SNV 0.043 0 23 hm5C_associated_SNPs_96239 0 0 1 0 1 FXYD5 chr19:35660469 3'AG 35660469 Downstream 34bp
chr17 37899243 37899243 1 + G T SARC 37899241 + 37899221 37899261 41 ACGTGTGTGAAATGCTGGTGCAGCGAGCTCACGCCTTGAGC ACGTGTGTGAAATGCTGGTGCATCGAGCTCACGCCTTGAGC < 41bp 0.702988562647837 0.341849864119854 0.09607151 0.041683227 prediction 0.405977125295675 Functional Loss - GRB7 ENSG00000141738 CDS Human protein_coding chr17:37899241 chr17:37899243 nonsynonymous SNV 0.955 0 23 hm5C_associated_SNPs_96241 0 0 1 0 2 GRB7 chr17:37899151 3'AG 37899151 Downstream 93bp
chr17 37899243 37899243 1 + G T SARC 37899241 + 37899221 37899261 41 ACGTGTGTGAAATGCTGGTGCAGCGAGCTCACGCCTTGAGC ACGTGTGTGAAATGCTGGTGCATCGAGCTCACGCCTTGAGC < 41bp 0.702988562647837 0.341849864119854 0.09607151 0.041683227 prediction 0.405977125295675 Functional Loss - GRB7 ENSG00000141738 CDS Human protein_coding chr17:37899241 chr17:37899243 nonsynonymous SNV 0.955 0 23 hm5C_associated_SNPs_96241 0 0 1 0 2 GRB7 chr17:37899307 5'GT 37899307 Upstream 65bp
chr8 32599536 32599536 1 + G T STAD 32599534 + 32599514 32599554 41 TTTGCCCTCTAGGTGCCAACCTGGATTCACTGGAGCAAGAT TTTGCCCTCTAGGTGCCAACCTTGATTCACTGGAGCAAGAT < 41bp 0.702984262330641 0.467638533769547 0.20980972 0.076115906 prediction 0.405968524661282 Functional Loss - NRG1 ENSG00000157168 CDS Human protein_coding chr8:32599534 chr8:32599536 stopgain 1.000 0 23 hm5C_associated_SNPs_96247 0 0 0 0 2 NRG1 chr8:32599526 3'AG 32599526 Downstream 11bp
chr8 32599536 32599536 1 + G T STAD 32599534 + 32599514 32599554 41 TTTGCCCTCTAGGTGCCAACCTGGATTCACTGGAGCAAGAT TTTGCCCTCTAGGTGCCAACCTTGATTCACTGGAGCAAGAT < 41bp 0.702984262330641 0.467638533769547 0.20980972 0.076115906 prediction 0.405968524661282 Functional Loss - NRG1 ENSG00000157168 CDS Human protein_coding chr8:32599534 chr8:32599536 stopgain 1.000 0 23 hm5C_associated_SNPs_96247 0 0 0 0 2 NRG1 chr8:32599593 5'GT 32599593 Upstream 58bp
chr16 3097494 3097494 1 + G A UCEC 3097491 + 3097471 3097511 41 TGCAGAGCCCTGAGAAGTTGCGCGATGCCATCAAAGTCATG TGCAGAGCCCTGAGAAGTTGCGCAATGCCATCAAAGTCATG < 41bp 0.827197916194975 0.624214576560393 0.41075492 0.36445716 prediction 0.405966679269163 Functional Loss - MMP25 ENSG00000008516 CDS Human protein_coding chr16:3097491 chr16:3097494 nonsynonymous SNV 0.941 1 24 hm5C_associated_SNPs_96248 0 0 0 0 1 MMP25 chr16:3097548 5'GT 3097548 Upstream 55bp
chr6 88138385 88138385 1 + A T LUSC 88138383 + 88138363 88138403 41 CTACTCTGTGGACCAGCTTGCAAGACGAAACTATTGTGGTT CTACTCTGTGGACCAGCTTGCATGACGAAACTATTGTGGTT < 41bp 0.70297550187904 0.482199541763141 0.8832503 0.33583823 prediction 0.405951003758079 Functional Loss - CFAP206 ENSG00000213204;ENSG00000272514 CDS Human other chr6:88138383 chr6:88138385 nonsynonymous SNV 0.015 3 23 hm5C_associated_SNPs_96252 0 0 1 0 1 CFAP206 chr6:88138344 3'AG 88138344 Downstream 42bp
chr6 148867216 148867216 1 + G T THYM 148867213 + 148867193 148867233 41 GCAGAGGACTTGGATCAGCCCGAGCGGGACGTCGCCGCCAA GCAGAGGACTTGGATCAGCCCGATCGGGACGTCGCCGCCAA < 41bp 0.702966331487432 0.300288013253132 0.613556 0.18650624 prediction 0.405932662974864 Functional Loss - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148867213 chr6:148867216 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_96258 0 0 0 0 2 SASH1 chr6:148867151 3'AG 148867151 Downstream 66bp
chr6 148867216 148867216 1 + G T THYM 148867213 + 148867193 148867233 41 GCAGAGGACTTGGATCAGCCCGAGCGGGACGTCGCCGCCAA GCAGAGGACTTGGATCAGCCCGATCGGGACGTCGCCGCCAA < 41bp 0.702966331487432 0.300288013253132 0.613556 0.18650624 prediction 0.405932662974864 Functional Loss - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148867213 chr6:148867216 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_96258 0 0 0 0 2 SASH1 chr6:148867282 5'GT 148867282 Upstream 67bp
chr9 35676353 35676353 1 + G A LGG 35676350 + 35676330 35676370 41 GTTGACGAGGCCTTGGGGCGCCCGGGAGGCCTGGCCGTGTT GTTGACGAGGCCTTGGGGCGCCCAGGAGGCCTGGCCGTGTT < 41bp 0.830572604756714 0.62760664533772 0.8827012 0.5166199 prediction 0.405931918837987 Functional Loss - CA9 ENSG00000107159 CDS Human protein_coding chr9:35676350 chr9:35676353 synonymous SNV . 0 24 hm5C_associated_SNPs_96259 0 0 1 0 2 CA9 chr9:35676294 3'AG 35676294 Downstream 60bp
chr9 35676353 35676353 1 + G A LGG 35676350 + 35676330 35676370 41 GTTGACGAGGCCTTGGGGCGCCCGGGAGGCCTGGCCGTGTT GTTGACGAGGCCTTGGGGCGCCCAGGAGGCCTGGCCGTGTT < 41bp 0.830572604756714 0.62760664533772 0.8827012 0.5166199 prediction 0.405931918837987 Functional Loss - CA9 ENSG00000107159 CDS Human protein_coding chr9:35676350 chr9:35676353 synonymous SNV . 0 24 hm5C_associated_SNPs_96259 0 0 1 0 2 CA9 chr9:35676386 5'GT 35676386 Upstream 34bp
chr17 27009838 27009838 1 + C T STAD 27009836 + 27009816 27009856 41 CACGAGACAGAGCAGTTTCCCGCGGAGCCCTTGGAGCTGGC CACGAGACAGAGCAGTTTCCCGTGGAGCCCTTGGAGCTGGC < 41bp 0.858756594845003 0.65579185643063 0.57182086 0.2715241 prediction 0.405929476828745 Functional Loss - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27009836 chr17:27009838 nonsynonymous SNV 0.740 1 23 hm5C_associated_SNPs_96260 0 0 1 0 2 SUPT6H chr17:27009745 3'AG 27009745 Downstream 94bp
chr17 27009838 27009838 1 + C T STAD 27009836 + 27009816 27009856 41 CACGAGACAGAGCAGTTTCCCGCGGAGCCCTTGGAGCTGGC CACGAGACAGAGCAGTTTCCCGTGGAGCCCTTGGAGCTGGC < 41bp 0.858756594845003 0.65579185643063 0.57182086 0.2715241 prediction 0.405929476828745 Functional Loss - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27009836 chr17:27009838 nonsynonymous SNV 0.740 1 23 hm5C_associated_SNPs_96260 0 0 1 0 2 SUPT6H chr17:27009874 5'GT 27009874 Upstream 37bp
chr2 106690462 106690462 1 + G C LUSC 106690458 + 106690438 106690478 41 GGACTCGGCCCGAGGTGCAGCAGTGGTACCAGCAGTTTCTC GGACTCGGCCCGAGGTGCAGCAGTCGTACCAGCAGTTTCTC < 41bp 0.702964083155738 0.399824054090879 0.39420873 0.47789997 prediction 0.405928166311476 Functional Loss - C2orf40 ENSG00000119147 CDS Human protein_coding chr2:106690458 chr2:106690462 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_96261 0 0 0 0 1 C2orf40 chr2:106690499 5'GT 106690499 Upstream 38bp
chr22 30050679 30050679 1 + G T THYM 30050676 + 30050656 30050696 41 ACGACCCCAGTGTTCACAAGCGGGGATTTTTGGCCCAAGAG ACGACCCCAGTGTTCACAAGCGGTGATTTTTGGCCCAAGAG < 41bp 0.702959687373552 0.316404455081248 0.94349647 0.45352674 prediction 0.405919374747103 Functional Loss - NF2 ENSG00000186575 CDS Human protein_coding chr22:30050676 chr22:30050679 stopgain 0.998 1 24 hm5C_associated_SNPs_96267 0 0 0 0 1 NF2 chr22:30050646 3'AG 30050646 Downstream 34bp
chr6 36990104 36990104 1 + C T COAD 36990101 + 36990081 36990121 41 ATGCGCTGCCAGGAGCCCTTCAACGCTCTGACGCGCCGTCG ATGCGCTGCCAGGAGCCCTTCAATGCTCTGACGCGCCGTCG < 41bp 0.70295816031504 0.4922561226724 0.13221326 0.23306581 prediction 0.405916320630081 Functional Loss - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36990101 chr6:36990104 synonymous SNV . 0 24 hm5C_associated_SNPs_96269 0 0 0 0 2 FGD2 chr6:36990015 3'AG 36990015 Downstream 90bp
chr6 36990104 36990104 1 + C T COAD 36990101 + 36990081 36990121 41 ATGCGCTGCCAGGAGCCCTTCAACGCTCTGACGCGCCGTCG ATGCGCTGCCAGGAGCCCTTCAATGCTCTGACGCGCCGTCG < 41bp 0.70295816031504 0.4922561226724 0.13221326 0.23306581 prediction 0.405916320630081 Functional Loss - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36990101 chr6:36990104 synonymous SNV . 0 24 hm5C_associated_SNPs_96269 0 0 0 0 2 FGD2 chr6:36990146 5'GT 36990146 Upstream 43bp
chr10 30739243 30739243 1 + C T ESCA 30739241 + 30739221 30739261 41 AAATCCAGGCTTGCTTCCGGCACGAGAACATCGCAGAGCTG AAATCCAGGCTTGCTTCCGGCATGAGAACATCGCAGAGCTG < 41bp 0.87690063344322 0.673944930196191 0.6488439 0.5247766 prediction 0.405911406494058 Functional Loss - MAP3K8 ENSG00000107968 CDS Human protein_coding chr10:30739241 chr10:30739243 synonymous SNV . 0 23 hm5C_associated_SNPs_96270 0 0 0 0 1 MAP3K8 chr10:30739187 3'AG 30739187 Downstream 57bp
chr17 72921751 72921751 1 + G T LUAD 72921749 + 72921729 72921769 41 GCCAGTCAGCCATCAAGATCCTGCACCCCCTCATCCAGGCT GCCAGTCAGCCATCAAGATCCTTCACCCCCTCATCCAGGCT < 41bp 0.702953547546233 0.350494827721863 0.006234169 0.009320378 prediction 0.405907095092466 Functional Loss - OTOP2 ENSG00000183034 CDS Human protein_coding chr17:72921749 chr17:72921751 synonymous SNV . 0 23 hm5C_associated_SNPs_96272 0 0 0 0 1 OTOP2 chr17:72921787 5'GT 72921787 Upstream 37bp
chr6 54791239 54791239 1 + G A LGG 54791236 + 54791216 54791256 41 AGAAATCGTTGAGGCATCAACTCGAGGAGTATCTGTTTACA AGAAATCGTTGAGGCATCAACTCAAGGAGTATCTGTTTACA < 41bp 0.795052645325983 0.592100127238873 0.40619186 0.1537177 prediction 0.40590503617422 Functional Loss - FAM83B ENSG00000168143 CDS Human protein_coding chr6:54791236 chr6:54791239 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_96273 0 0 1 0 1 FAM83B chr6:54791169 3'AG 54791169 Downstream 71bp
chr20 61471965 61471965 1 + G C HNSC 61471961 + 61471941 61471981 41 CCCGGCGAGCCTGGGCCTCCCGGAGATCCTGGGCTTCCAGG CCCGGCGAGCCTGGGCCTCCCGGACATCCTGGGCTTCCAGG < 41bp 0.875855662868321 0.672907077465264 0.9071823 0.3556431 prediction 0.405897170806114 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61471961 chr20:61471965 nonsynonymous SNV 0.004 4 25 hm5C_associated_SNPs_96277 0 0 1 0 1 COL9A3 chr20:61471894 3'AG 61471894 Downstream 72bp
chr4 154265839 154265839 1 + C T rs142163233 154265837 + 154265817 154265857 41 AAACGCGTCCTGGCCTGTCCCGCCCCTCTCCCCAAGCGCGG AAACGCGTCCTGGCCTGTCCCGTCCCTCTCCCCAAGCGCGG < 41bp 0.772017471573321 0.569069486109265 0.09487602 0.12690163 prediction 0.405895970928113 Functional Loss - MND1 ENSG00000121211 UTR5 Human protein_coding chr4:154265837 chr4:154265839 . . 0 23 hm5C_associated_SNPs_96278 0 0 1 0 1 MND1 chr4:154265892 5'GT 154265892 Upstream 54bp
chrX 135618297 135618297 1 + G T LUSC 135618293 + 135618273 135618313 41 TACTTCCAAGGGGACATCAGCAGCGTAGTGGATGAACACTT TACTTCCAAGGGGACATCAGCAGCTTAGTGGATGAACACTT < 41bp 0.702946772619014 0.496424713959996 0.585395 0.5334757 prediction 0.405893545238028 Functional Loss - VGLL1 ENSG00000102243 CDS Human protein_coding chrX:135618293 chrX:135618297 nonsynonymous SNV 0.051 2 25 hm5C_associated_SNPs_96279 0 0 0 0 1 VGLL1 chrX:135618393 5'GT 135618393 Upstream 97bp
chr12 32369262 32369262 1 + G T UCEC 32369260 + 32369240 32369280 41 GGAAACGCTTCTGCAGGAGTCAGCATCGAAGGAGGCTTACT GGAAACGCTTCTGCAGGAGTCATCATCGAAGGAGGCTTACT < 41bp 0.702945668813773 0.352570534647709 0.76544565 0.12890387 prediction 0.405891337627546 Functional Loss - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32369260 chr12:32369262 nonsynonymous SNV 0.921 4 23 hm5C_associated_SNPs_96282 0 0 1 0 1 BICD1 chr12:32369181 3'AG 32369181 Downstream 82bp
chr10 124813251 124813251 1 + C T SKCM 124813248 + 124813228 124813268 41 GCTTCCAACATCCAGTTGAACACCATTGCAAAGCATATCGA GCTTCCAACATCCAGTTGAACACTATTGCAAAGCATATCGA < 41bp 0.702936710733823 0.482333159813888 0.036933213 0.022523612 prediction 0.405873421467646 Functional Loss - ACADSB ENSG00000196177 CDS Human protein_coding chr10:124813248 chr10:124813251 synonymous SNV . 0 24 hm5C_associated_SNPs_96290 0 0 0 0 1 ACADSB chr10:124813211 3'AG 124813211 Downstream 41bp
chr6 44360532 44360532 1 + C T STAD 44360529 + 44360509 44360549 41 TGCTCCAATCATTGGAAGAACAGCGGCCCAGTGCTTAGAAC TGCTCCAATCATTGGAAGAACAGTGGCCCAGTGCTTAGAAC < 41bp 0.702934455332434 0.486776588300658 0.5517411 0.26762706 prediction 0.405868910664868 Functional Loss - CDC5L ENSG00000096401 CDS Human protein_coding chr6:44360529 chr6:44360532 nonsynonymous SNV 0.980 4 24 hm5C_associated_SNPs_96291 0 0 1 0 1 CDC5L chr6:44360565 5'GT 44360565 Upstream 34bp
chr12 4763595 4763595 1 + G T UCEC 4763593 + 4763573 4763613 41 GGCCACTGTGTTTGGAGCAACAGGATTCCTGGGGCGATATG GGCCACTGTGTTTGGAGCAACATGATTCCTGGGGCGATATG < 41bp 0.916623694411682 0.713691614179058 0.8752037 0.3249952 prediction 0.405864160465249 Functional Loss - NDUFA9 ENSG00000139180 CDS Human protein_coding chr12:4763593 chr12:4763595 stopgain 0.998 1 23 hm5C_associated_SNPs_96293 0 0 1 0 1 NDUFA9 chr12:4763628 5'GT 4763628 Upstream 34bp
chr11 134234254 134234254 1 + G A UCEC 134234251 + 134234231 134234271 41 CCATCAACTTGCAGTCAACACACGAGCTGCAGCTACTGACC CCATCAACTTGCAGTCAACACACAAGCTGCAGCTACTGACC < 41bp 0.837382194256284 0.634458296258837 0.36847538 0.1287188 prediction 0.405847795994893 Functional Loss - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134234251 chr11:134234254 nonsynonymous SNV 0.053 1 24 hm5C_associated_SNPs_96297 0 0 0 0 2 GLB1L2 chr11:134234222 3'AG 134234222 Downstream 33bp
chr11 134234254 134234254 1 + G A UCEC 134234251 + 134234231 134234271 41 CCATCAACTTGCAGTCAACACACGAGCTGCAGCTACTGACC CCATCAACTTGCAGTCAACACACAAGCTGCAGCTACTGACC < 41bp 0.837382194256284 0.634458296258837 0.36847538 0.1287188 prediction 0.405847795994893 Functional Loss - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134234251 chr11:134234254 nonsynonymous SNV 0.053 1 24 hm5C_associated_SNPs_96297 0 0 0 0 2 GLB1L2 chr11:134234292 5'GT 134234292 Upstream 39bp
chr16 31392315 31392315 1 + C T GBM 31392312 + 31392292 31392332 41 GTTGCTGCTGGCACTCATCACAGCGGTACTGTACAAAGTGA GTTGCTGCTGGCACTCATCACAGTGGTACTGTACAAAGTGA < 41bp 0.724159895257951 0.521236688441584 0.92176944 0.8837933 prediction 0.405846413632734 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31392312 chr16:31392315 nonsynonymous SNV 0.387 1 24 hm5C_associated_SNPs_96298 0 0 0 0 2 ITGAX chr16:31392218 3'AG 31392218 Downstream 98bp
chr16 31392315 31392315 1 + C T GBM 31392312 + 31392292 31392332 41 GTTGCTGCTGGCACTCATCACAGCGGTACTGTACAAAGTGA GTTGCTGCTGGCACTCATCACAGTGGTACTGTACAAAGTGA < 41bp 0.724159895257951 0.521236688441584 0.92176944 0.8837933 prediction 0.405846413632734 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31392312 chr16:31392315 nonsynonymous SNV 0.387 1 24 hm5C_associated_SNPs_96298 0 0 0 0 2 ITGAX chr16:31392328 5'GT 31392328 Upstream 14bp
chr12 56494908 56494908 1 + C T rs551223118 56494906 + 56494886 56494926 41 AGTCTCTCTACACCCAATGCCACGGGGATGCCTGGCATCAG AGTCTCTCTACACCCAATGCCATGGGGATGCCTGGCATCAG < 41bp 0.702920546897254 0.43248281697797 0.45240885 0.49981448 prediction 0.405841093794509 Functional Loss - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56494906 chr12:56494908 nonsynonymous SNV 0.150 0 23 hm5C_associated_SNPs_96301 0 0 1 0 1 ERBB3 chr12:56494845 3'AG 56494845 Downstream 64bp
chr1 155182238 155182238 1 + G T UCEC 155182234 + 155182214 155182254 41 AGTGACCCGGAAGTGGTATGCAGAGGCTATGCCCTTTCCCC AGTGACCCGGAAGTGGTATGCAGATGCTATGCCCTTTCCCC < 41bp 0.70719401268276 0.504274170639901 0.9325639 0.9021958 prediction 0.405839684085718 Functional Loss - MTX1 ENSG00000173171 CDS Human protein_coding chr1:155182234 chr1:155182238 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_96303 0 0 0 0 1 MTX1 chr1:155182176 3'AG 155182176 Downstream 63bp
chr9 71555681 71555681 1 + G A READ 71555678 + 71555658 71555698 41 ACGTCAATGAGCACTATCCACACGACAGGCCTACACTCTAT ACGTCAATGAGCACTATCCACACAACAGGCCTACACTCTAT < 41bp 0.79658839579267 0.593668800568096 0.0641278 0.14060897 prediction 0.405839190449148 Functional Loss - PIP5K1B ENSG00000107242 CDS Human protein_coding chr9:71555678 chr9:71555681 nonsynonymous SNV 0.350 0 24 hm5C_associated_SNPs_96304 0 0 0 2 1 PIP5K1B chr9:71555706 5'GT 71555706 Upstream 26bp
chr10 129845668 129845668 1 + G A LUSC 129845665 + 129845645 129845685 41 CTCCTGCAGGCCCTCCGGACCCGGGCGCCTCCCAGCCGCTG CTCCTGCAGGCCCTCCGGACCCGAGCGCCTCCCAGCCGCTG < 41bp 0.702916495142549 0.446290097631006 0.90629876 0.80060333 prediction 0.405832990285097 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129845665 chr10:129845668 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_96308 0 0 0 0 2 PTPRE chr10:129845654 3'AG 129845654 Downstream 15bp
chr10 129845668 129845668 1 + G A LUSC 129845665 + 129845645 129845685 41 CTCCTGCAGGCCCTCCGGACCCGGGCGCCTCCCAGCCGCTG CTCCTGCAGGCCCTCCGGACCCGAGCGCCTCCCAGCCGCTG < 41bp 0.702916495142549 0.446290097631006 0.90629876 0.80060333 prediction 0.405832990285097 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129845665 chr10:129845668 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_96308 0 0 0 0 2 PTPRE chr10:129845753 5'GT 129845753 Upstream 86bp
chr15 63541860 63541860 1 + G A LUSC 63541857 + 63541837 63541877 41 ATTTTAGGGACACAGCGGGTCAGGAAAGATTCCGAACAATC ATTTTAGGGACACAGCGGGTCAGAAAAGATTCCGAACAATC < 41bp 0.780985160670361 0.578069529001325 0.36402828 0.117800534 prediction 0.405831263338072 Functional Loss - RAB8B ENSG00000166128 CDS Human protein_coding chr15:63541857 chr15:63541860 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_96309 0 0 1 0 2 RAB8B chr15:63541844 3'AG 63541844 Downstream 17bp
chr15 63541860 63541860 1 + G A LUSC 63541857 + 63541837 63541877 41 ATTTTAGGGACACAGCGGGTCAGGAAAGATTCCGAACAATC ATTTTAGGGACACAGCGGGTCAGAAAAGATTCCGAACAATC < 41bp 0.780985160670361 0.578069529001325 0.36402828 0.117800534 prediction 0.405831263338072 Functional Loss - RAB8B ENSG00000166128 CDS Human protein_coding chr15:63541857 chr15:63541860 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_96309 0 0 1 0 2 RAB8B chr15:63541904 5'GT 63541904 Upstream 45bp
chr19 41012159 41012159 1 + G C SKCM 41012158 + 41012138 41012178 41 TGTAGGCTCAGCTGCTGTCCCGGGAGTGTGGGCAGCACCTG TGTAGGCTCAGCTGCTGTCCCCGGAGTGTGGGCAGCACCTG < 41bp 0.893957113064393 0.69104189620151 0.9082849 0.8400824 prediction 0.405830433725766 Functional Loss - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41012158 chr19:41012159 nonsynonymous SNV 0.991 0 22 hm5C_associated_SNPs_96310 0 0 0 0 1 SPTBN4 chr19:41012143 3'AG 41012143 Downstream 17bp
chr8 22414382 22414382 1 + G A rs575294896 22414379 + 22414359 22414399 41 TGGGTCAAGTACGAGGGAATCGGGCCCGTGGACGAGAGCGG TGGGTCAAGTACGAGGGAATCGGACCCGTGGACGAGAGCGG < 41bp 0.702914557601409 0.456335598411191 0.9032766 0.6803897 prediction 0.405829115202818 Functional Loss - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22414379 chr8:22414382 synonymous SNV . 0 24 hm5C_associated_SNPs_96311 0 0 1 0 1 SORBS3 chr8:22414421 5'GT 22414421 Upstream 40bp
chr12 67696194 67696194 1 + G T UCEC 67696190 + 67696170 67696210 41 CTTGGATGCTGTAGTTAGCACAAGGCATGAAATGCTTCCAG CTTGGATGCTGTAGTTAGCACAAGTCATGAAATGCTTCCAG < 41bp 0.706597396687204 0.503687846531177 0.42253307 0.38950542 prediction 0.405819100312055 Functional Loss - CAND1 ENSG00000111530 CDS Human protein_coding chr12:67696190 chr12:67696194 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_96315 0 0 1 0 1 CAND1 chr12:67696103 3'AG 67696103 Downstream 92bp
chr17 9737202 9737202 1 + G T GBM 9737198 + 9737178 9737218 41 GCATGTCTGAGAGACTTACTCAAGGAACCTTCTGGTAAGCA GCATGTCTGAGAGACTTACTCAAGTAACCTTCTGGTAAGCA < 41bp 0.70338332335536 0.500473936536939 0.9029298 0.8251669 prediction 0.405818773636842 Functional Loss - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9737198 chr17:9737202 stopgain 0.977 0 25 hm5C_associated_SNPs_96316 0 0 0 0 2 GLP2R chr17:9737124 3'AG 9737124 Downstream 79bp
chr17 9737202 9737202 1 + G T GBM 9737198 + 9737178 9737218 41 GCATGTCTGAGAGACTTACTCAAGGAACCTTCTGGTAAGCA GCATGTCTGAGAGACTTACTCAAGTAACCTTCTGGTAAGCA < 41bp 0.70338332335536 0.500473936536939 0.9029298 0.8251669 prediction 0.405818773636842 Functional Loss - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9737198 chr17:9737202 stopgain 0.977 0 25 hm5C_associated_SNPs_96316 0 0 0 0 2 GLP2R chr17:9737211 5'GT 9737211 Upstream 10bp
chr7 92086735 92086735 1 + G A rs6946180 92086732 + 92086712 92086752 41 AGGTTGCAGTGAGCAGAGATCGTGCCACTGCACTCCAGCCT AGGTTGCAGTGAGCAGAGATCGTACCACTGCACTCCAGCCT < 41bp 0.702905914582186 0.454920786746993 0.79996175 0.60429895 prediction 0.405811829164372 Functional Loss - GATAD1 ENSG00000157259 UTR3 Human protein_coding chr7:92086732 chr7:92086735 . . 0 24 hm5C_associated_SNPs_96317 0 0 0 0 1 GATAD1 chr7:92086676 3'AG 92086676 Downstream 60bp
chrX 49098583 49098583 1 + C T UCEC 49098580 + 49098560 49098600 41 TTCTTGGCTGAGCGTCTGCCCACCGATGCCTCTGAGGATGC TTCTTGGCTGAGCGTCTGCCCACTGATGCCTCTGAGGATGC < 41bp 0.7029057522877 0.485913166614077 0.08652645 0.13033918 prediction 0.405811504575401 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49098580 chrX:49098583 synonymous SNV . 0 24 hm5C_associated_SNPs_96318 0 0 0 0 1 CCDC22 chrX:49098614 5'GT 49098614 Upstream 32bp
chr10 122334668 122334668 1 + G A rs569831062 122334665 + 122334645 122334685 41 GCCTTTTCGGGCCTTGGCTTCACGACGTTCTACTTGGCGGG GCCTTTTCGGGCCTTGGCTTCACAACGTTCTACTTGGCGGG < 41bp 0.830253696369805 0.627348294571598 0.37885794 0.3095551 prediction 0.405810803596414 Functional Loss - PLPP4 ENSG00000203805 CDS Human protein_coding chr10:122334665 chr10:122334668 synonymous SNV . 0 24 hm5C_associated_SNPs_96319 0 0 0 0 1 PLPP4 chr10:122334643 3'AG 122334643 Downstream 26bp
chr16 31496157 31496157 1 + C T CESC 31496154 + 31496134 31496174 41 ACCCAGGTTGGGGCCTCTCTCTTCGCCAGCAACATCGGCAG ACCCAGGTTGGGGCCTCTCTCTTTGCCAGCAACATCGGCAG < 41bp 0.71884253713826 0.515938408441838 0.3566506 0.18141505 prediction 0.405808257392843 Functional Loss - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31496154 chr16:31496157 synonymous SNV . 0 24 hm5C_associated_SNPs_96321 0 0 0 0 2 SLC5A2 chr16:31496140 3'AG 31496140 Downstream 18bp
chr16 31496157 31496157 1 + C T CESC 31496154 + 31496134 31496174 41 ACCCAGGTTGGGGCCTCTCTCTTCGCCAGCAACATCGGCAG ACCCAGGTTGGGGCCTCTCTCTTTGCCAGCAACATCGGCAG < 41bp 0.71884253713826 0.515938408441838 0.3566506 0.18141505 prediction 0.405808257392843 Functional Loss - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31496154 chr16:31496157 synonymous SNV . 0 24 hm5C_associated_SNPs_96321 0 0 0 0 2 SLC5A2 chr16:31496244 5'GT 31496244 Upstream 88bp
chr16 31717354 31717354 1 + T C rs1406178 31717353 + 31717333 31717373 41 ACACAGGGCTTTTACCATAACTGGTGAGTCCCTGCCAGCCT ACACAGGGCTTTTACCATAACCGGTGAGTCCCTGCCAGCCT < 41bp 0.759039344457673 0.556138478366661 0.15580904 0.067144305 prediction 0.405801732182023 Functional Loss - CLUHP3 ENSG00000131797 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:31717353 chr16:31717354 . . 0 22 hm5C_associated_SNPs_96322 0 0 1 0 1 CLUHP3 chr16:31717355 5'GT 31717355 Upstream 2bp
chr1 146758079 146758079 1 + A C COAD 146758075 + 146758055 146758095 41 GGGAAGAGAGCTCTGCTGAGCTGGATTACCAAGACCCAGAT GGGAAGAGAGCTCTGCTGAGCTGGCTTACCAAGACCCAGAT < 41bp 0.941671620158013 0.738773039426963 0.22934857 0.27448732 prediction 0.4057971614621 Functional Loss - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146758075 chr1:146758079 nonsynonymous SNV 0.966 0 25 hm5C_associated_SNPs_96324 0 0 1 0 1 CHD1L chr1:146758177 5'GT 146758177 Upstream 99bp
chr6 83835391 83835391 1 + G A CESC 83835388 + 83835368 83835408 41 TCCACTGTTATCTGCTAGCACTGGAGGTGTTTTGCAGTTTC TCCACTGTTATCTGCTAGCACTGAAGGTGTTTTGCAGTTTC < 41bp 0.786972073719795 0.584074277551465 0.45044762 0.09508622 prediction 0.40579559233666 Functional Loss - DOPEY1 ENSG00000083097 CDS Human protein_coding chr6:83835388 chr6:83835391 nonsynonymous SNV 0.364 0 24 hm5C_associated_SNPs_96327 0 0 0 0 1 DOPEY1 chr6:83835452 5'GT 83835452 Upstream 62bp
chr2 96874697 96874697 1 + C T rs189772980 96874695 + 96874675 96874715 41 CTCCTGCCCCTTCATGCATGCGCGGAGGCCGCCTGCTAGCA CTCCTGCCCCTTCATGCATGCGTGGAGGCCGCCTGCTAGCA < 41bp 0.794785301377689 0.591887855591128 0.45980453 0.43154034 prediction 0.405794891573121 Functional Loss - STARD7-AS1 ENSG00000204685 ncRNA_exonic Human processed_transcript chr2:96874695 chr2:96874697 . . 0 23 hm5C_associated_SNPs_96328 0 0 1 0 1 STARD7-AS1 chr2:96874717 5'GT 96874717 Upstream 21bp
chr7 99045859 99045859 1 + G T COAD 99045856 + 99045836 99045876 41 GAGTTCCTGCATGAGTATGACATGACCAAGATGCCCGAGTG GAGTTCCTGCATGAGTATGACATTACCAAGATGCCCGAGTG < 41bp 0.702894662330004 0.307424170876251 0.16465399 0.05364448 prediction 0.405789324660008 Functional Loss - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99045856 chr7:99045859 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_96333 0 0 1 0 1 CPSF4 chr7:99045896 5'GT 99045896 Upstream 38bp
chr16 81479080 81479080 1 + G A SKCM 81479077 + 81479057 81479097 41 TTTCTCAGCAAGATCCTCACCTCGAAATTCCTGAGGCGCTG TTTCTCAGCAAGATCCTCACCTCAAAATTCCTGAGGCGCTG < 41bp 0.802803962937321 0.599911864535625 0.8965564 0.17191231 prediction 0.405784196803394 Functional Loss - CMIP ENSG00000153815 CDS Human protein_coding chr16:81479077 chr16:81479080 synonymous SNV . 0 24 hm5C_associated_SNPs_96337 0 0 1 0 1 CMIP chr16:81479146 5'GT 81479146 Upstream 67bp
chrX 13331451 13331451 1 + G A rs143122872 13331448 + 13331428 13331468 41 TTTCTTCTGCTGCTGCTAGTCATGAGATCAAGGTGGGTCTG TTTCTTCTGCTGCTGCTAGTCATAAGATCAAGGTGGGTCTG < 41bp 0.769315506845121 0.566426183560478 0.72541016 0.42034835 prediction 0.405778646569286 Functional Loss - GS1-600G8.3 ENSG00000231216 ncRNA_exonic Human antisense chrX:13331448 chrX:13331451 . . 0 24 hm5C_associated_SNPs_96339 0 0 1 0 2 GS1-600G8.3 chrX:13331388 3'AG 13331388 Downstream 64bp
chrX 13331451 13331451 1 + G A rs143122872 13331448 + 13331428 13331468 41 TTTCTTCTGCTGCTGCTAGTCATGAGATCAAGGTGGGTCTG TTTCTTCTGCTGCTGCTAGTCATAAGATCAAGGTGGGTCTG < 41bp 0.769315506845121 0.566426183560478 0.72541016 0.42034835 prediction 0.405778646569286 Functional Loss - GS1-600G8.3 ENSG00000231216 ncRNA_exonic Human antisense chrX:13331448 chrX:13331451 . . 0 24 hm5C_associated_SNPs_96339 0 0 1 0 2 GS1-600G8.3 chrX:13331459 5'GT 13331459 Upstream 9bp
chr8 8860620 8860620 1 + T C rs2288672 8860619 + 8860599 8860639 41 CTGCCGGCGAGGCCGTGGCTCTCGCGCTGCTGGAGTCGCCG CTGCCGGCGAGGCCGTGGCTCCCGCGCTGCTGGAGTCGCCG < 41bp 0.752543721514354 0.549655143367318 0.23866001 0.16165334 prediction 0.405777156294073 Functional Loss - ERI1 ENSG00000104626 CDS Human protein_coding chr8:8860619 chr8:8860620 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_96342 0 0 1 0 1 ERI1 chr8:8860681 5'GT 8860681 Upstream 62bp
chr9 126136903 126136903 1 + C T HNSC 126136901 + 126136881 126136921 41 GCAGCCTGAATGTCACCTGCCTCGATGGCAGCCCATGTGAG GCAGCCTGAATGTCACCTGCCTTGATGGCAGCCCATGTGAG < 41bp 0.702881181312769 0.418918722885918 0.7323221 0.16399407 prediction 0.405762362625538 Functional Loss - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126136901 chr9:126136903 synonymous SNV . 0 23 hm5C_associated_SNPs_96347 0 0 0 0 2 CRB2 chr9:126136858 3'AG 126136858 Downstream 46bp
chr9 126136903 126136903 1 + C T HNSC 126136901 + 126136881 126136921 41 GCAGCCTGAATGTCACCTGCCTCGATGGCAGCCCATGTGAG GCAGCCTGAATGTCACCTGCCTTGATGGCAGCCCATGTGAG < 41bp 0.702881181312769 0.418918722885918 0.7323221 0.16399407 prediction 0.405762362625538 Functional Loss - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126136901 chr9:126136903 synonymous SNV . 0 23 hm5C_associated_SNPs_96347 0 0 0 0 2 CRB2 chr9:126136974 5'GT 126136974 Upstream 72bp
chr17 78086452 78086452 1 + C T LUAD 78086449 + 78086429 78086469 41 TTTGCTGGCCACGGCCGATACGCCGGCCACTGGACGGGGGA TTTGCTGGCCACGGCCGATACGCTGGCCACTGGACGGGGGA < 41bp 0.757080942886682 0.554203631118112 0.09996694 0.09417266 prediction 0.405754623537139 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78086449 chr17:78086452 synonymous SNV . 0 24 hm5C_associated_SNPs_96353 1 0 1 0 2 GAA chr17:78086377 3'AG 78086377 Downstream 76bp
chr17 78086452 78086452 1 + C T LUAD 78086449 + 78086429 78086469 41 TTTGCTGGCCACGGCCGATACGCCGGCCACTGGACGGGGGA TTTGCTGGCCACGGCCGATACGCTGGCCACTGGACGGGGGA < 41bp 0.757080942886682 0.554203631118112 0.09996694 0.09417266 prediction 0.405754623537139 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78086449 chr17:78086452 synonymous SNV . 0 24 hm5C_associated_SNPs_96353 1 0 1 0 2 GAA chr17:78086510 5'GT 78086510 Upstream 59bp
chr4 111441409 111441409 1 + G A SKCM 111441406 + 111441386 111441426 41 GTGAAAGAAGTAATGGACACCTGGACCAGACAGATGGGTTA GTGAAAGAAGTAATGGACACCTGAACCAGACAGATGGGTTA < 41bp 0.702874948590394 0.477155050191822 0.099802524 0.13782433 prediction 0.405749897180788 Functional Loss - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111441406 chr4:111441409 stopgain 0.983 1 24 hm5C_associated_SNPs_96357 0 0 0 0 1 ENPEP chr4:111441371 3'AG 111441371 Downstream 39bp
chr8 124864328 124864328 1 + C T rs13272683 124864326 + 124864306 124864346 41 ACCGTGAGACCAGTGAATTCCACGAGCACGAACCCACTGCT ACCGTGAGACCAGTGAATTCCATGAGCACGAACCCACTGCT < 41bp 0.709481850426552 0.506606921289614 0.34071463 0.12938738 prediction 0.405749858273875 Functional Loss - FER1L6 ENSG00000214814 UTR5 Human protein_coding chr8:124864326 chr8:124864328 . . 0 23 hm5C_associated_SNPs_96358 0 0 0 0 1 FER1L6 chr8:124864425 5'GT 124864425 Upstream 98bp
chr2 113763616 113763616 1 + C T BLCA 113763613 + 113763593 113763633 41 TCAATCATCGGGTGTGGGTTCTTCAGGACCAGACGCTCATA TCAATCATCGGGTGTGGGTTCTTTAGGACCAGACGCTCATA < 41bp 0.771793572737433 0.568919699248052 0.17043832 0.13630638 prediction 0.405747746978761 Functional Loss - IL36A ENSG00000136694 CDS Human protein_coding chr2:113763613 chr2:113763616 stopgain 0.032 0 24 hm5C_associated_SNPs_96359 0 0 0 0 2 IL36A chr2:113763551 3'AG 113763551 Downstream 66bp
chr2 113763616 113763616 1 + C T BLCA 113763613 + 113763593 113763633 41 TCAATCATCGGGTGTGGGTTCTTCAGGACCAGACGCTCATA TCAATCATCGGGTGTGGGTTCTTTAGGACCAGACGCTCATA < 41bp 0.771793572737433 0.568919699248052 0.17043832 0.13630638 prediction 0.405747746978761 Functional Loss - IL36A ENSG00000136694 CDS Human protein_coding chr2:113763613 chr2:113763616 stopgain 0.032 0 24 hm5C_associated_SNPs_96359 0 0 0 0 2 IL36A chr2:113763664 5'GT 113763664 Upstream 49bp
chr12 124189191 124189191 1 + G A BRCA 124189188 + 124189168 124189208 41 ATCCTCATCTCGGATGCTGGCGCGGTGGAAGGGATTACTCA ATCCTCATCTCGGATGCTGGCGCAGTGGAAGGGATTACTCA < 41bp 0.826045001620015 0.623171818800543 0.8724268 0.6161643 prediction 0.405746365638945 Functional Loss - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124189188 chr12:124189191 synonymous SNV . 0 24 hm5C_associated_SNPs_96360 0 0 1 0 1 TCTN2 chr12:124189235 5'GT 124189235 Upstream 45bp
chr14 60581721 60581721 1 + G A BLCA 60581718 + 60581698 60581738 41 AGTAATGTTCATCATGTCTGCTGGAACAGCTATAGCATCAT AGTAATGTTCATCATGTCTGCTGAAACAGCTATAGCATCAT < 41bp 0.702872823172378 0.477309052561817 0.081190616 0.041021854 prediction 0.405745646344755 Functional Loss - PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60581718 chr14:60581721 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_96361 0 0 1 0 1 PCNX4 chr14:60581692 3'AG 60581692 Downstream 30bp
chr11 118516333 118516333 1 + G A rs138777339 118516330 + 118516310 118516350 41 ATGGAGACCAGCATCTCCACCGGGGGCAACTCGGCCTGCTC ATGGAGACCAGCATCTCCACCGGAGGCAACTCGGCCTGCTC < 41bp 0.818309177118961 0.615438329965734 0.9601177 0.94620305 prediction 0.405741694306455 Functional Loss - PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118516330 chr11:118516333 synonymous SNV . 0 24 hm5C_associated_SNPs_96363 0 0 1 0 1 PHLDB1 chr11:118516368 5'GT 118516368 Upstream 36bp
chrX 130220601 130220601 1 + G T BLCA 130220599 + 130220579 130220619 41 GTGGAAACCTCTGCTGAAGCCCGGGCTGCTGTCCTTGCTCA GTGGAAACCTCTGCTGAAGCCCTGGCTGCTGTCCTTGCTCA < 41bp 0.702870730875611 0.332533800958653 0.84567773 0.32705596 prediction 0.405741461751222 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220599 chrX:130220601 nonsynonymous SNV 0.697 1 23 hm5C_associated_SNPs_96364 0 0 0 0 2 ARHGAP36 chrX:130220533 3'AG 130220533 Downstream 69bp
chrX 130220601 130220601 1 + G T BLCA 130220599 + 130220579 130220619 41 GTGGAAACCTCTGCTGAAGCCCGGGCTGCTGTCCTTGCTCA GTGGAAACCTCTGCTGAAGCCCTGGCTGCTGTCCTTGCTCA < 41bp 0.702870730875611 0.332533800958653 0.84567773 0.32705596 prediction 0.405741461751222 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220599 chrX:130220601 nonsynonymous SNV 0.697 1 23 hm5C_associated_SNPs_96364 0 0 0 0 2 ARHGAP36 chrX:130220639 5'GT 130220639 Upstream 39bp
chr12 48921709 48921709 1 + C T SKCM 48921707 + 48921687 48921727 41 GTTACAAGGGGGAAAGAAGCCTCCGGGACAGCAGTCATTTG GTTACAAGGGGGAAAGAAGCCTTCGGGACAGCAGTCATTTG < 41bp 0.865299552842516 0.662429885267384 0.26883313 0.23651144 prediction 0.405739335150264 Functional Loss - OR8S1 ENSG00000197376 CDS Human protein_coding chr12:48921707 chr12:48921709 synonymous SNV . 0 23 hm5C_associated_SNPs_96365 0 0 0 0 1 OR8S1 chr12:48921695 3'AG 48921695 Downstream 15bp
chr20 44750990 44750990 1 + C T GBM 44750987 + 44750967 44751007 41 CACTGCCACCAGCACAAATACTGCGACCCCAGTGCGTGCGC CACTGCCACCAGCACAAATACTGTGACCCCAGTGCGTGCGC < 41bp 0.779885169516441 0.577018482338228 0.3207127 0.26521122 prediction 0.405733374356426 Functional Loss - CD40 ENSG00000101017 CDS Human protein_coding chr20:44750987 chr20:44750990 synonymous SNV . 0 24 hm5C_associated_SNPs_96366 0 0 0 0 1 CD40 chr20:44750997 5'GT 44750997 Upstream 8bp
chrX 55779873 55779873 1 + G T LUAD 55779870 + 55779850 55779890 41 TGATTCCCAATGTTCAGCAGCTGGAAATGAACCTAAGGAAT TGATTCCCAATGTTCAGCAGCTGTAAATGAACCTAAGGAAT < 41bp 0.702863806358725 0.312442499583666 0.34114826 0.2533906 prediction 0.40572761271745 Functional Loss - RRAGB ENSG00000083750 CDS Human protein_coding chrX:55779870 chrX:55779873 stopgain 1.000 1 24 hm5C_associated_SNPs_96369 0 0 0 0 2 RRAGB chrX:55779825 3'AG 55779825 Downstream 49bp
chrX 55779873 55779873 1 + G T LUAD 55779870 + 55779850 55779890 41 TGATTCCCAATGTTCAGCAGCTGGAAATGAACCTAAGGAAT TGATTCCCAATGTTCAGCAGCTGTAAATGAACCTAAGGAAT < 41bp 0.702863806358725 0.312442499583666 0.34114826 0.2533906 prediction 0.40572761271745 Functional Loss - RRAGB ENSG00000083750 CDS Human protein_coding chrX:55779870 chrX:55779873 stopgain 1.000 1 24 hm5C_associated_SNPs_96369 0 0 0 0 2 RRAGB chrX:55779947 5'GT 55779947 Upstream 75bp
chr5 135496554 135496554 1 + C T SKCM 135496551 + 135496531 135496571 41 TTTTTGTTTTTCAGTCTTACCTCCAGTATTAGTGCCTCGTC TTTTTGTTTTTCAGTCTTACCTCTAGTATTAGTGCCTCGTC < 41bp 0.788186867063409 0.585325074027261 0.9477488 0.5845751 prediction 0.405723586072297 Functional Loss - SMAD5 ENSG00000113658 CDS Human protein_coding chr5:135496551 chr5:135496554 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_96371 0 0 1 0 1 SMAD5 chr5:135496545 3'AG 135496545 Downstream 10bp
chr15 25417659 25417659 1 + G T LUSC 25417656 + 25417636 25417676 41 CTGGGCCAGTGTCCATCAGCCAGGTGCCCAGACCCCAGTGC CTGGGCCAGTGTCCATCAGCCAGTTGCCCAGACCCCAGTGC < 41bp 0.70286158307986 0.335117991912142 0.9026282 0.44733647 prediction 0.405723166159719 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25417656 chr15:25417659 . . 0 24 hm5C_associated_SNPs_96372 0 0 1 0 2 SNHG14 chr15:25417595 3'AG 25417595 Downstream 65bp
chr15 25417659 25417659 1 + G T LUSC 25417656 + 25417636 25417676 41 CTGGGCCAGTGTCCATCAGCCAGGTGCCCAGACCCCAGTGC CTGGGCCAGTGTCCATCAGCCAGTTGCCCAGACCCCAGTGC < 41bp 0.70286158307986 0.335117991912142 0.9026282 0.44733647 prediction 0.405723166159719 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25417656 chr15:25417659 . . 0 24 hm5C_associated_SNPs_96372 0 0 1 0 2 SNHG14 chr15:25417725 5'GT 25417725 Upstream 67bp
chr16 30982993 30982993 1 + C T SKCM 30982990 + 30982970 30983010 41 GCCGGAAAGGGTTGCAGGCTCCCCAGTCACACCCCTGCCCG GCCGGAAAGGGTTGCAGGCTCCCTAGTCACACCCCTGCCCG < 41bp 0.702861171857608 0.492786161289215 0.014185667 0.00892657 prediction 0.405722343715216 Functional Loss - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30982990 chr16:30982993 nonsynonymous SNV 0.265 2 24 hm5C_associated_SNPs_96373 0 0 1 0 1 SETD1A chr16:30983040 5'GT 30983040 Upstream 48bp
chr19 48221862 48221862 1 + C T UCEC 48221859 + 48221839 48221879 41 GGTGCCAAGCAGAGAGTGAGCCGCGGTGAGTGGGGCCAGAC GGTGCCAAGCAGAGAGTGAGCCGTGGTGAGTGGGGCCAGAC < 41bp 0.729985226191662 0.527125650883098 0.8741857 0.70073724 prediction 0.405719150617127 Functional Loss - EHD2 ENSG00000024422 CDS Human protein_coding chr19:48221859 chr19:48221862 synonymous SNV . 0 24 hm5C_associated_SNPs_96374 0 0 0 0 2 EHD2 chr19:48221766 3'AG 48221766 Downstream 97bp
chr19 48221862 48221862 1 + C T UCEC 48221859 + 48221839 48221879 41 GGTGCCAAGCAGAGAGTGAGCCGCGGTGAGTGGGGCCAGAC GGTGCCAAGCAGAGAGTGAGCCGTGGTGAGTGGGGCCAGAC < 41bp 0.729985226191662 0.527125650883098 0.8741857 0.70073724 prediction 0.405719150617127 Functional Loss - EHD2 ENSG00000024422 CDS Human protein_coding chr19:48221859 chr19:48221862 synonymous SNV . 0 24 hm5C_associated_SNPs_96374 0 0 0 0 2 EHD2 chr19:48221863 5'GT 48221863 Upstream 2bp
chr4 71115171 71115171 1 + G T LUAD 71115169 + 71115149 71115189 41 AGTTGCAGTTACTCCACCTACGGCATAAAAACACCAAGGAA AGTTGCAGTTACTCCACCTACGTCATAAAAACACCAAGGAA < 41bp 0.896303857211041 0.69344740597934 0.057100385 0.044777006 prediction 0.405712902463402 Functional Loss - CSN3 ENSG00000171209 CDS Human protein_coding chr4:71115169 chr4:71115171 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_96376 0 0 0 0 1 CSN3 chr4:71115210 5'GT 71115210 Upstream 40bp
chr20 43043167 43043167 1 + G A SKCM 43043164 + 43043144 43043184 41 AAGATCACCTCCCCCGTCTCCGGGATCAACGGCGACATTCG AAGATCACCTCCCCCGTCTCCGGAATCAACGGCGACATTCG < 41bp 0.82279938900068 0.619944898117668 0.9113469 0.7324393 prediction 0.405708981766025 Functional Loss - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43043164 chr20:43043167 synonymous SNV . 0 24 hm5C_associated_SNPs_96378 0 0 1 0 1 HNF4A chr20:43043147 3'AG 43043147 Downstream 21bp
chr9 104075240 104075240 1 + C T UCEC 104075237 + 104075217 104075257 41 TGCTGGTTTCATCCTGGGCACTGCAGTGGCCCTGTTTCTGG TGCTGGTTTCATCCTGGGCACTGTAGTGGCCCTGTTTCTGG < 41bp 0.783402481001052 0.580553784530317 0.21051127 0.16015881 prediction 0.40569739294147 Functional Loss - PLPPR1 ENSG00000148123 CDS Human protein_coding chr9:104075237 chr9:104075240 nonsynonymous SNV 0.682 4 24 hm5C_associated_SNPs_96383 0 0 1 0 1 PLPPR1 chr9:104075256 5'GT 104075256 Upstream 17bp
chrX 17764185 17764185 1 + G T UCEC 17764183 + 17764163 17764203 41 CCTGTAATACTGAAGAGCAACTGAAGACAGTTGATGATGTC CCTGTAATACTGAAGAGCAACTTAAGACAGTTGATGATGTC < 41bp 0.702845360805308 0.366524518448218 0.8598491 0.34489006 prediction 0.405690721610616 Functional Loss - SCML1 ENSG00000047634 CDS Human protein_coding chrX:17764183 chrX:17764185 synonymous SNV . 0 23 hm5C_associated_SNPs_96385 0 0 1 0 3 SCML1 chrX:17764135 3'AG 17764135 Downstream 51bp
chrX 17764185 17764185 1 + G T UCEC 17764183 + 17764163 17764203 41 CCTGTAATACTGAAGAGCAACTGAAGACAGTTGATGATGTC CCTGTAATACTGAAGAGCAACTTAAGACAGTTGATGATGTC < 41bp 0.702845360805308 0.366524518448218 0.8598491 0.34489006 prediction 0.405690721610616 Functional Loss - SCML1 ENSG00000047634 CDS Human protein_coding chrX:17764183 chrX:17764185 synonymous SNV . 0 23 hm5C_associated_SNPs_96385 0 0 1 0 3 SCML1 chrX:17764138 3'AG 17764138 Downstream 48bp
chrX 17764185 17764185 1 + G T UCEC 17764183 + 17764163 17764203 41 CCTGTAATACTGAAGAGCAACTGAAGACAGTTGATGATGTC CCTGTAATACTGAAGAGCAACTTAAGACAGTTGATGATGTC < 41bp 0.702845360805308 0.366524518448218 0.8598491 0.34489006 prediction 0.405690721610616 Functional Loss - SCML1 ENSG00000047634 CDS Human protein_coding chrX:17764183 chrX:17764185 synonymous SNV . 0 23 hm5C_associated_SNPs_96385 0 0 1 0 3 SCML1 chrX:17764218 5'GT 17764218 Upstream 34bp
chr19 5649954 5649954 1 + C T COAD 5649952 + 5649932 5649972 41 TCTAGTTCTCCCGAAGATGACTCGGATACAAAAAGGCTTTC TCTAGTTCTCCCGAAGATGACTTGGATACAAAAAGGCTTTC < 41bp 0.70284494241454 0.416546287422285 0.26145315 0.1742459 prediction 0.405689884829079 Functional Loss - SAFB ENSG00000160633 CDS Human protein_coding chr19:5649952 chr19:5649954 nonsynonymous SNV 0.861 0 23 hm5C_associated_SNPs_96388 0 0 1 0 1 SAFB chr19:5649937 3'AG 5649937 Downstream 18bp
chr3 14220380 14220380 1 + A C ACC 14220379 + 14220359 14220399 41 ACATGGCGGACGACGTAGACCAGGTAAGTGTATTTTAAGGA ACATGGCGGACGACGTAGACCCGGTAAGTGTATTTTAAGGA < 41bp 0.838223380309114 0.635384062385069 0.7074423 0.11888495 prediction 0.405678635848091 Functional Loss - LSM3 ENSG00000170860 CDS Human protein_coding chr3:14220379 chr3:14220380 nonsynonymous SNV 0.978 1 22 hm5C_associated_SNPs_96392 0 0 1 0 1 LSM3 chr3:14220381 5'GT 14220381 Upstream 2bp
chr6 11538562 11538562 1 + G A UCEC 11538559 + 11538539 11538579 41 TGATCAACCTGTCGGTGCAGCAGGTCCTGAGCCTCTGGGCC TGATCAACCTGTCGGTGCAGCAGATCCTGAGCCTCTGGGCC < 41bp 0.702838679368283 0.460562719762622 0.6000068 0.21579659 prediction 0.405677358736566 Functional Loss - TMEM170B ENSG00000205269 CDS Human protein_coding chr6:11538559 chr6:11538562 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_96393 0 0 1 0 1 TMEM170B chr6:11538607 5'GT 11538607 Upstream 46bp
chr17 34901624 34901624 1 + C T UCEC 34901621 + 34901601 34901641 41 GACGGGGAGGAGGAGTTCCCCTTCGAGAGGAGGCAGATTCC GACGGGGAGGAGGAGTTCCCCTTTGAGAGGAGGCAGATTCC < 41bp 0.702837856281527 0.492391580069611 0.19291961 0.16918403 prediction 0.405675712563055 Functional Loss - GGNBP2 ENSG00000005955 CDS Human other chr17:34901621 chr17:34901624 synonymous SNV . 0 24 hm5C_associated_SNPs_96394 0 0 1 0 1 GGNBP2 chr17:34901666 5'GT 34901666 Upstream 43bp
chr7 143085736 143085736 1 + C T LUAD 143085733 + 143085713 143085753 41 AGTCTGGAGGGGGCGCCGTACTGCGAGGGCTGTTACACTGT AGTCTGGAGGGGGCGCCGTACTGTGAGGGCTGTTACACTGT < 41bp 0.74007085173058 0.537235316534191 0.20193744 0.21476999 prediction 0.405671070392778 Functional Loss - ZYX ENSG00000159840 CDS Human protein_coding chr7:143085733 chr7:143085736 synonymous SNV . 0 24 hm5C_associated_SNPs_96396 0 0 1 0 1 ZYX chr7:143085751 5'GT 143085751 Upstream 16bp
chr20 43944884 43944884 1 + A T UCEC 43944880 + 43944860 43944900 41 CTGCTTAACGACAGCTCTTGCTGGACCATCATCGGCACCGA CTGCTTAACGACAGCTCTTGCTGGTCCATCATCGGCACCGA < 41bp 0.910085968198145 0.707252538311884 0.4692467 0.34710497 prediction 0.405666859772523 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43944880 chr20:43944884 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_96398 0 0 0 0 2 RBPJL chr20:43944827 3'AG 43944827 Downstream 58bp
chr20 43944884 43944884 1 + A T UCEC 43944880 + 43944860 43944900 41 CTGCTTAACGACAGCTCTTGCTGGACCATCATCGGCACCGA CTGCTTAACGACAGCTCTTGCTGGTCCATCATCGGCACCGA < 41bp 0.910085968198145 0.707252538311884 0.4692467 0.34710497 prediction 0.405666859772523 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43944880 chr20:43944884 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_96398 0 0 0 0 2 RBPJL chr20:43944982 5'GT 43944982 Upstream 99bp
chr16 90160900 90160900 1 + G A UCEC 90160897 + 90160877 90160917 41 CCCCACCGCCCTCCTGGGAACGCGGCCCTCCCCTCGCTCAT CCCCACCGCCCTCCTGGGAACGCAGCCCTCCCCTCGCTCAT < 41bp 0.814271727412211 0.611442889424797 0.73928946 0.38488853 prediction 0.405657675974827 Functional Loss - PRDM7;FAM157B ENSG00000261812 intronic Human transcribed_unprocessed_pseudogene chr16:90160897 chr16:90160900 . . 0 24 hm5C_associated_SNPs_96400 0 0 0 0 1 PRDM7;FAM157B chr16:90160943 5'GT 90160943 Upstream 44bp
chr22 35943111 35943111 1 + G A UCEC 35943108 + 35943088 35943128 41 CACCCCTTCCCCGCCATGCGCAGGCTGTCCATCCTCACAGG CACCCCTTCCCCGCCATGCGCAGACTGTCCATCCTCACAGG < 41bp 0.702828647378976 0.436118218994549 0.73261 0.16034693 prediction 0.405657294757951 Functional Loss - RASD2 ENSG00000100302 CDS Human protein_coding chr22:35943108 chr22:35943111 synonymous SNV . 0 24 hm5C_associated_SNPs_96401 0 0 0 0 1 RASD2 chr22:35943127 5'GT 35943127 Upstream 17bp
chr11 66264937 66264937 1 + C T UCEC 66264934 + 66264914 66264954 41 AGCCTGCTCTAGAGCGCTTCCTGCGGAGACTTCAGGTAAGC AGCCTGCTCTAGAGCGCTTCCTGTGGAGACTTCAGGTAAGC < 41bp 0.702828028383992 0.487102175495386 0.24958736 0.13453832 prediction 0.405656056767985 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66264934 chr11:66264937 nonsynonymous SNV 0.947 2 24 hm5C_associated_SNPs_96402 0 0 1 0 1 DPP3 chr11:66264948 5'GT 66264948 Upstream 12bp
chr15 45048627 45048627 1 + G T UCEC 45048623 + 45048603 45048643 41 CTCTGAAGGAGCTTCAGACCCTGAGGAACATGCAGAAGGAA CTCTGAAGGAGCTTCAGACCCTGATGAACATGCAGAAGGAA < 41bp 0.702827321838627 0.497840263810468 0.35291216 0.19835967 prediction 0.405654643677254 Functional Loss - TRIM69 ENSG00000185880 CDS Human protein_coding chr15:45048623 chr15:45048627 nonsynonymous SNV 0.062 0 25 hm5C_associated_SNPs_96405 0 0 0 0 2 TRIM69 chr15:45048566 3'AG 45048566 Downstream 62bp
chr15 45048627 45048627 1 + G T UCEC 45048623 + 45048603 45048643 41 CTCTGAAGGAGCTTCAGACCCTGAGGAACATGCAGAAGGAA CTCTGAAGGAGCTTCAGACCCTGATGAACATGCAGAAGGAA < 41bp 0.702827321838627 0.497840263810468 0.35291216 0.19835967 prediction 0.405654643677254 Functional Loss - TRIM69 ENSG00000185880 CDS Human protein_coding chr15:45048623 chr15:45048627 nonsynonymous SNV 0.062 0 25 hm5C_associated_SNPs_96405 0 0 0 0 2 TRIM69 chr15:45048661 5'GT 45048661 Upstream 35bp
chr20 62724306 62724306 1 + G T STAD 62724302 + 62724282 62724322 41 GCCTTGTCATGTACGTCATCCTCAGGTAGGCTGGGCCCCAA GCCTTGTCATGTACGTCATCCTCATGTAGGCTGGGCCCCAA < 41bp 0.705915611961761 0.503089657514128 0.051611602 0.056064814 prediction 0.405651908895265 Functional Loss - OPRL1 ENSG00000125510 CDS Human protein_coding chr20:62724302 chr20:62724306 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_96406 0 0 0 0 1 OPRL1 chr20:62724306 5'GT 62724306 Upstream 1bp
chr19 3762792 3762792 1 + G A PAAD 3762789 + 3762769 3762809 41 CCGCCACTTCCGGAAGACTCCTGGCCCGGGATTATGCCAAG CCGCCACTTCCGGAAGACTCCTGACCCGGGATTATGCCAAG < 41bp 0.702824918688135 0.460151795947792 0.33467448 0.070747495 prediction 0.40564983737627 Functional Loss - MRPL54 ENSG00000183617 CDS Human protein_coding chr19:3762789 chr19:3762792 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_96407 0 0 1 0 1 MRPL54 chr19:3762816 5'GT 3762816 Upstream 25bp
chrX 21627270 21627270 1 + G T HNSC 21627267 + 21627247 21627287 41 CTTCTCAGTCTCAGTCTTCTCATGAGGAGTTTCGCCAGGAA CTTCTCAGTCTCAGTCTTCTCATTAGGAGTTTCGCCAGGAA < 41bp 0.702824022133527 0.316476259585597 0.8725986 0.27954692 prediction 0.405648044267055 Functional Loss - CNKSR2 ENSG00000149970 CDS Human protein_coding chrX:21627267 chrX:21627270 stopgain 0.999 1 24 hm5C_associated_SNPs_96408 0 0 0 0 1 CNKSR2 chrX:21627189 3'AG 21627189 Downstream 82bp
chr16 20851721 20851721 1 + G A UCEC 20851718 + 20851698 20851738 41 TTTAGCAAAAATTGCAATCTCAGGGCTCTGAAGAGGCTGTT TTTAGCAAAAATTGCAATCTCAGAGCTCTGAAGAGGCTGTT < 41bp 0.821581524511344 0.618757917126143 0.8643945 0.6032595 prediction 0.405647214770403 Functional Loss - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20851718 chr16:20851721 synonymous SNV . 0 24 hm5C_associated_SNPs_96409 0 0 0 0 2 REXO5 chr16:20851653 3'AG 20851653 Downstream 69bp
chr16 20851721 20851721 1 + G A UCEC 20851718 + 20851698 20851738 41 TTTAGCAAAAATTGCAATCTCAGGGCTCTGAAGAGGCTGTT TTTAGCAAAAATTGCAATCTCAGAGCTCTGAAGAGGCTGTT < 41bp 0.821581524511344 0.618757917126143 0.8643945 0.6032595 prediction 0.405647214770403 Functional Loss - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20851718 chr16:20851721 synonymous SNV . 0 24 hm5C_associated_SNPs_96409 0 0 0 0 2 REXO5 chr16:20851790 5'GT 20851790 Upstream 70bp
chr20 33582138 33582138 1 + G T CESC 33582136 + 33582116 33582156 41 CTGCGGCCGAGGCCAAGCGCCAGGAACTGGAGGAGACGCAC CTGCGGCCGAGGCCAAGCGCCATGAACTGGAGGAGACGCAC < 41bp 0.702822495549314 0.343988180396815 0.848866 0.23052776 prediction 0.405644991098627 Functional Loss - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33582136 chr20:33582138 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_96411 0 0 0 0 1 MYH7B chr20:33582204 5'GT 33582204 Upstream 67bp
chr19 1105242 1105242 1 + G C SARC 1105238 + 1105218 1105258 41 TCCATGCACGAGTTTTCCGCCAAGGACATCGACGGGCACAT TCCATGCACGAGTTTTCCGCCAAGCACATCGACGGGCACAT < 41bp 0.702822140252297 0.408254421345791 0.4627566 0.3597052 prediction 0.405644280504595 Functional Loss - GPX4 ENSG00000167468 CDS Human protein_coding chr19:1105238 chr19:1105242 unknown 0.963 3 25 hm5C_associated_SNPs_96412 0 0 1 0 2 GPX4 chr19:1105185 3'AG 1105185 Downstream 58bp
chr19 1105242 1105242 1 + G C SARC 1105238 + 1105218 1105258 41 TCCATGCACGAGTTTTCCGCCAAGGACATCGACGGGCACAT TCCATGCACGAGTTTTCCGCCAAGCACATCGACGGGCACAT < 41bp 0.702822140252297 0.408254421345791 0.4627566 0.3597052 prediction 0.405644280504595 Functional Loss - GPX4 ENSG00000167468 CDS Human protein_coding chr19:1105238 chr19:1105242 unknown 0.963 3 25 hm5C_associated_SNPs_96412 0 0 1 0 2 GPX4 chr19:1105279 5'GT 1105279 Upstream 38bp
chr13 32376299 32376299 1 + G A SKCM 32376296 + 32376276 32376316 41 TTTCCAGACACAATGACTTCCTGGATAGTGATTTTTTTCCT TTTCCAGACACAATGACTTCCTGAATAGTGATTTTTTTCCT < 41bp 0.730553880186745 0.527733338362974 0.16305158 0.122229636 prediction 0.405641083647541 Functional Loss - RXFP2 ENSG00000133105 CDS Human protein_coding chr13:32376296 chr13:32376299 stopgain 1.000 1 24 hm5C_associated_SNPs_96413 0 0 0 0 1 RXFP2 chr13:32376283 3'AG 32376283 Downstream 17bp
chr18 10485734 10485734 1 + C T rs61744718 10485731 + 10485711 10485751 41 GCCCGGGGCCGCTACAGCCGCGGCGTCCTCTCGTCCAGGGT GCCCGGGGCCGCTACAGCCGCGGTGTCCTCTCGTCCAGGGT < 41bp 0.717744308766228 0.514924683391795 0.85283875 0.84453183 prediction 0.405639250748865 Functional Loss - APCDD1 ENSG00000154856 CDS Human protein_coding chr18:10485731 chr18:10485734 synonymous SNV . 0 24 hm5C_associated_SNPs_96414 0 0 0 0 1 APCDD1 chr18:10485780 5'GT 10485780 Upstream 47bp
chr12 569666 569666 1 + G A LUAD 569663 + 569643 569683 41 TGGGGCTCTGGACTCTGTATCTGGAACTGGTGGCGTCGGCC TGGGGCTCTGGACTCTGTATCTGAAACTGGTGGCGTCGGCC < 41bp 0.78764433342749 0.584826029431585 0.8761338 0.63544494 prediction 0.40563660799181 Functional Loss - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:569663 chr12:569666 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_96415 0 0 0 0 1 B4GALNT3 chr12:569711 5'GT 569711 Upstream 46bp
chr19 13869981 13869981 1 + C T STAD 13869978 + 13869958 13869998 41 CTGGAGCATGGCGAGGCCGACCGCAGCACACTCAAGAAGGC CTGGAGCATGGCGAGGCCGACCGTAGCACACTCAAGAAGGC < 41bp 0.73978050488313 0.536963004534833 0.2895013 0.23510134 prediction 0.405635000696595 Functional Loss - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13869978 chr19:13869981 synonymous SNV . 0 24 hm5C_associated_SNPs_96416 0 0 1 0 1 CCDC130 chr19:13869914 3'AG 13869914 Downstream 68bp
chr15 76206478 76206478 1 + C T BLCA 76206475 + 76206455 76206495 41 GAAAAGAACTAGTATGGAAACAGCACTTGCCCTTGAGAAGC GAAAAGAACTAGTATGGAAACAGTACTTGCCCTTGAGAAGC < 41bp 0.772140302294535 0.569325708403619 0.1583454 0.13248378 prediction 0.405629187781833 Functional Loss - FBXO22 ENSG00000167196 CDS Human protein_coding chr15:76206475 chr15:76206478 nonsynonymous SNV 0.867 3 24 hm5C_associated_SNPs_96419 0 0 1 0 2 FBXO22 chr15:76206451 3'AG 76206451 Downstream 28bp
chr15 76206478 76206478 1 + C T BLCA 76206475 + 76206455 76206495 41 GAAAAGAACTAGTATGGAAACAGCACTTGCCCTTGAGAAGC GAAAAGAACTAGTATGGAAACAGTACTTGCCCTTGAGAAGC < 41bp 0.772140302294535 0.569325708403619 0.1583454 0.13248378 prediction 0.405629187781833 Functional Loss - FBXO22 ENSG00000167196 CDS Human protein_coding chr15:76206475 chr15:76206478 nonsynonymous SNV 0.867 3 24 hm5C_associated_SNPs_96419 0 0 1 0 2 FBXO22 chr15:76206546 5'GT 76206546 Upstream 69bp
chr8 15480708 15480708 1 + G A CESC 15480705 + 15480685 15480725 41 GCACCACCTCGAAACTATTCCATGATTGTTATGTTCACTGC GCACCACCTCGAAACTATTCCATAATTGTTATGTTCACTGC < 41bp 0.702811298447888 0.467471483127777 0.24793863 0.15915 prediction 0.405622596895777 Functional Loss - TUSC3 ENSG00000104723 CDS Human protein_coding chr8:15480705 chr8:15480708 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_96421 0 0 1 4 1 TUSC3 chr8:15480758 5'GT 15480758 Upstream 51bp
chr4 48490497 48490497 1 + C T STAD 48490494 + 48490474 48490514 41 GTGGTCCTTTTCATAATGACCGGCACTATGTTAGGACCTGA GTGGTCCTTTTCATAATGACCGGTACTATGTTAGGACCTGA < 41bp 0.753532571914548 0.55072455772517 0.262705 0.26240396 prediction 0.405616028378756 Functional Loss - SLC10A4 ENSG00000145248 CDS Human protein_coding chr4:48490494 chr4:48490497 synonymous SNV . 0 24 hm5C_associated_SNPs_96422 0 0 1 0 1 SLC10A4 chr4:48490444 3'AG 48490444 Downstream 54bp
chr18 60021677 60021677 1 + G T LUSC 60021673 + 60021653 60021693 41 AACAGCACGACCCCCCGGCGCTGCGCGTGCACGGCTGGGTA AACAGCACGACCCCCCGGCGCTGCTCGTGCACGGCTGGGTA < 41bp 0.758305251324435 0.555497350224513 0.3943775 0.18358949 prediction 0.405615802199843 Functional Loss - TNFRSF11A ENSG00000141655 CDS Human protein_coding chr18:60021673 chr18:60021677 nonsynonymous SNV 0.457 1 25 hm5C_associated_SNPs_96423 0 0 0 0 2 TNFRSF11A chr18:60021624 3'AG 60021624 Downstream 54bp
chr18 60021677 60021677 1 + G T LUSC 60021673 + 60021653 60021693 41 AACAGCACGACCCCCCGGCGCTGCGCGTGCACGGCTGGGTA AACAGCACGACCCCCCGGCGCTGCTCGTGCACGGCTGGGTA < 41bp 0.758305251324435 0.555497350224513 0.3943775 0.18358949 prediction 0.405615802199843 Functional Loss - TNFRSF11A ENSG00000141655 CDS Human protein_coding chr18:60021673 chr18:60021677 nonsynonymous SNV 0.457 1 25 hm5C_associated_SNPs_96423 0 0 0 0 2 TNFRSF11A chr18:60021767 5'GT 60021767 Upstream 91bp
chrX 70756122 70756122 1 + C T PCPG 70756119 + 70756099 70756139 41 TTTGAGGCAGCTGAGAGACACTGCATGCAGCTCTGGAGACA TTTGAGGCAGCTGAGAGACACTGTATGCAGCTCTGGAGACA < 41bp 0.796690045330863 0.59388252970178 0.24429968 0.1608459 prediction 0.405615031258167 Functional Loss - OGT ENSG00000147162 CDS Human protein_coding chrX:70756119 chrX:70756122 synonymous SNV . 0 24 hm5C_associated_SNPs_96424 0 0 1 0 3 OGT chrX:70756028 3'AG 70756028 Downstream 95bp
chrX 70756122 70756122 1 + C T PCPG 70756119 + 70756099 70756139 41 TTTGAGGCAGCTGAGAGACACTGCATGCAGCTCTGGAGACA TTTGAGGCAGCTGAGAGACACTGTATGCAGCTCTGGAGACA < 41bp 0.796690045330863 0.59388252970178 0.24429968 0.1608459 prediction 0.405615031258167 Functional Loss - OGT ENSG00000147162 CDS Human protein_coding chrX:70756119 chrX:70756122 synonymous SNV . 0 24 hm5C_associated_SNPs_96424 0 0 1 0 3 OGT chrX:70756058 3'AG 70756058 Downstream 65bp
chrX 70756122 70756122 1 + C T PCPG 70756119 + 70756099 70756139 41 TTTGAGGCAGCTGAGAGACACTGCATGCAGCTCTGGAGACA TTTGAGGCAGCTGAGAGACACTGTATGCAGCTCTGGAGACA < 41bp 0.796690045330863 0.59388252970178 0.24429968 0.1608459 prediction 0.405615031258167 Functional Loss - OGT ENSG00000147162 CDS Human protein_coding chrX:70756119 chrX:70756122 synonymous SNV . 0 24 hm5C_associated_SNPs_96424 0 0 1 0 3 OGT chrX:70756208 5'GT 70756208 Upstream 87bp
chr4 1206203 1206203 1 - G A LGG 1206206 - 1206186 1206226 41 ACCCTCTCCCAGCAGGTACCCTCCGGGCGTGGTGGGCGTGG ACCCTCTCCCAGCAGGTACCCTCTGGGCGTGGTGGGCGTGG < 41bp 0.718646168587532 0.515842967952494 0.88126194 0.18992314 prediction 0.405606401270075 Functional Loss - CTBP1 ENSG00000159692 CDS Human protein_coding chr4:1206206 chr4:1206203 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_96426 0 0 1 0 2 CTBP1 chr4:1206211 3'AG 1206211 Downstream 9bp
chr4 1206203 1206203 1 - G A LGG 1206206 - 1206186 1206226 41 ACCCTCTCCCAGCAGGTACCCTCCGGGCGTGGTGGGCGTGG ACCCTCTCCCAGCAGGTACCCTCTGGGCGTGGTGGGCGTGG < 41bp 0.718646168587532 0.515842967952494 0.88126194 0.18992314 prediction 0.405606401270075 Functional Loss - CTBP1 ENSG00000159692 CDS Human protein_coding chr4:1206206 chr4:1206203 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_96426 0 0 1 0 2 CTBP1-AS chr4:1206214 3'AG 1206214 Downstream 12bp
chr15 101098980 101098980 1 + G A UCEC 101098977 + 101098957 101098997 41 TCCTTCACCGGGTGCACCCGCCCGAACGTCCCAGTGCCCAC TCCTTCACCGGGTGCACCCGCCCAAACGTCCCAGTGCCCAC < 41bp 0.801587475899311 0.598785208952499 0.092838794 0.020957172 prediction 0.405604533893625 Functional Loss - LOC102723335;PRKXP1 ENSG00000259205;ENSG00000259540 ncRNA_exonic Human other chr15:101098977 chr15:101098980 . . 0 24 hm5C_associated_SNPs_96427 0 0 0 0 1 LOC102723335;PRKXP1 chr15:101099027 5'GT 101099027 Upstream 48bp
chr8 90777651 90777651 1 + A T UCEC 90777647 + 90777627 90777667 41 CCCTTGGTGTAAATTACCTGCACAATATGACTCCTCCTTTA CCCTTGGTGTAAATTACCTGCACATTATGACTCCTCCTTTA < 41bp 0.70279916883706 0.354814048591342 0.0046058297 0.0047599077 prediction 0.405598337674119 Functional Loss - RIPK2 ENSG00000104312 CDS Human protein_coding chr8:90777647 chr8:90777651 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_96429 0 0 1 0 2 RIPK2 chr8:90777569 3'AG 90777569 Downstream 83bp
chr8 90777651 90777651 1 + A T UCEC 90777647 + 90777627 90777667 41 CCCTTGGTGTAAATTACCTGCACAATATGACTCCTCCTTTA CCCTTGGTGTAAATTACCTGCACATTATGACTCCTCCTTTA < 41bp 0.70279916883706 0.354814048591342 0.0046058297 0.0047599077 prediction 0.405598337674119 Functional Loss - RIPK2 ENSG00000104312 CDS Human protein_coding chr8:90777647 chr8:90777651 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_96429 0 0 1 0 2 RIPK2 chr8:90777724 5'GT 90777724 Upstream 74bp
chr11 61539148 61539148 1 + G T SARC 61539144 + 61539124 61539164 41 CTCCCCAGGGTCCGCTCTCCCCGGGCCCTGGTTCCTTGCCT CTCCCCAGGGTCCGCTCTCCCCGGTCCCTGGTTCCTTGCCT < 41bp 0.751392207256823 0.54859393871061 0.92731524 0.5161629 prediction 0.405596537092427 Functional Loss - MYRF ENSG00000124920 CDS Human protein_coding chr11:61539144 chr11:61539148 nonsynonymous SNV 0.048 4 25 hm5C_associated_SNPs_96430 0 0 1 0 1 MYRF chr11:61539222 5'GT 61539222 Upstream 75bp
chr11 64129432 64129432 1 + G T SARC 64129428 + 64129408 64129448 41 TCCTAAGAAGCGATTGGGCGCGGGGCCCCAGGGGGCACAAG TCCTAAGAAGCGATTGGGCGCGGGTCCCCAGGGGGCACAAG < 41bp 0.751335909316983 0.548537796906981 0.88160914 0.8205736 prediction 0.405596224820003 Functional Loss - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64129428 chr11:64129432 synonymous SNV . 0 25 hm5C_associated_SNPs_96431 0 0 1 0 1 RPS6KA4 chr11:64129474 5'GT 64129474 Upstream 43bp
chr9 131765192 131765192 1 + C T rs562785472 131765189 + 131765169 131765209 41 TGGAGCAGCTGCTCAAAACTCTGCGCTACAACTTCCTGCCT TGGAGCAGCTGCTCAAAACTCTGTGCTACAACTTCCTGCCT < 41bp 0.702797886393782 0.48930253607826 0.8911482 0.8872274 prediction 0.405595772787564 Functional Loss - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131765189 chr9:131765192 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_96432 0 0 1 0 2 NUP188 chr9:131765096 3'AG 131765096 Downstream 97bp
chr9 131765192 131765192 1 + C T rs562785472 131765189 + 131765169 131765209 41 TGGAGCAGCTGCTCAAAACTCTGCGCTACAACTTCCTGCCT TGGAGCAGCTGCTCAAAACTCTGTGCTACAACTTCCTGCCT < 41bp 0.702797886393782 0.48930253607826 0.8911482 0.8872274 prediction 0.405595772787564 Functional Loss - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131765189 chr9:131765192 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_96432 0 0 1 0 2 NUP188 chr9:131765254 5'GT 131765254 Upstream 63bp
chr8 57124329 57124329 1 + T C rs143730228 57124328 + 57124308 57124348 41 GATGCGCGCTACTTAAGGTCCTGCTGCGTGAGCCATTGACG GATGCGCGCTACTTAAGGTCCCGCTGCGTGAGCCATTGACG < 41bp 0.702796012236871 0.487682378390572 0.08387855 0.031684995 prediction 0.405592024473742 Functional Loss - CHCHD7 ENSG00000170791 UTR5 Human protein_coding chr8:57124328 chr8:57124329 . . 0 22 hm5C_associated_SNPs_96434 0 0 1 0 1 CHCHD7 chr8:57124396 5'GT 57124396 Upstream 68bp
chr17 19437294 19437294 1 + G A COAD 19437291 + 19437271 19437311 41 CCCGCGCCAGTGCGCGGAGGCCCGGAGGCCACCCTTGAGGT CCCGCGCCAGTGCGCGGAGGCCCAGAGGCCACCCTTGAGGT < 41bp 0.702795808046916 0.452710239236964 0.89671683 0.6427518 prediction 0.405591616093832 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19437291 chr17:19437294 synonymous SNV . 0 24 hm5C_associated_SNPs_96435 0 0 1 0 1 SLC47A1 chr17:19437387 5'GT 19437387 Upstream 94bp
chr2 9572814 9572814 1 + G A LUAD 9572811 + 9572791 9572831 41 TTCATGATTGAGATCGCAGGCGTGAAGGTACCCTCTGGCTG TTCATGATTGAGATCGCAGGCGTAAAGGTACCCTCTGGCTG < 41bp 0.824508189352284 0.621712509116681 0.19503179 0.16850162 prediction 0.405591360471206 Functional Loss - CPSF3 ENSG00000119203 CDS Human protein_coding chr2:9572811 chr2:9572814 synonymous SNV . 0 24 hm5C_associated_SNPs_96436 0 0 1 0 1 CPSF3 chr2:9572817 5'GT 9572817 Upstream 4bp
chr13 32352709 32352709 1 + A C STAD 32352705 + 32352685 32352725 41 GCAGATGTGTGCCCAAATGCCTCAACTCAACTGGGTGTGAG GCAGATGTGTGCCCAAATGCCTCACCTCAACTGGGTGTGAG < 41bp 0.702794816886562 0.274242114667922 0.05531928 0.022152215 prediction 0.405589633773124 Functional Loss - RXFP2 ENSG00000133105 CDS Human protein_coding chr13:32352705 chr13:32352709 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_96437 0 0 0 0 2 RXFP2 chr13:32352649 3'AG 32352649 Downstream 61bp
chr13 32352709 32352709 1 + A C STAD 32352705 + 32352685 32352725 41 GCAGATGTGTGCCCAAATGCCTCAACTCAACTGGGTGTGAG GCAGATGTGTGCCCAAATGCCTCACCTCAACTGGGTGTGAG < 41bp 0.702794816886562 0.274242114667922 0.05531928 0.022152215 prediction 0.405589633773124 Functional Loss - RXFP2 ENSG00000133105 CDS Human protein_coding chr13:32352705 chr13:32352709 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_96437 0 0 0 0 2 RXFP2 chr13:32352720 5'GT 32352720 Upstream 12bp
chr1 227842159 227842159 1 + T C rs151083594 227842158 + 227842138 227842178 41 AATTTGCACTTAGTGAAAGACTGGAGAACTGTGAATGAAGG AATTTGCACTTAGTGAAAGACCGGAGAACTGTGAATGAAGG < 41bp 0.702794205042036 0.476506229249933 0.19088256 0.2625432 prediction 0.405588410084072 Functional Loss - ZNF678 ENSG00000181450 CDS Human protein_coding chr1:227842158 chr1:227842159 nonsynonymous SNV 0.011 0 22 hm5C_associated_SNPs_96439 0 0 1 4 1 ZNF678 chr1:227842177 5'GT 227842177 Upstream 19bp
chr19 19351491 19351491 1 + G T LUSC 19351487 + 19351467 19351507 41 TTTCCAGTGGACGGACAACACCGGGCTGGTGAGTGGCAGGG TTTCCAGTGGACGGACAACACCGGTCTGGTGAGTGGCAGGG < 41bp 0.727707487367455 0.524922389080288 0.8216044 0.6214755 prediction 0.405570196574334 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19351487 chr19:19351491 synonymous SNV . 0 25 hm5C_associated_SNPs_96441 0 0 0 0 2 NCAN chr19:19351412 3'AG 19351412 Downstream 80bp
chr19 19351491 19351491 1 + G T LUSC 19351487 + 19351467 19351507 41 TTTCCAGTGGACGGACAACACCGGGCTGGTGAGTGGCAGGG TTTCCAGTGGACGGACAACACCGGTCTGGTGAGTGGCAGGG < 41bp 0.727707487367455 0.524922389080288 0.8216044 0.6214755 prediction 0.405570196574334 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19351487 chr19:19351491 synonymous SNV . 0 25 hm5C_associated_SNPs_96441 0 0 0 0 2 NCAN chr19:19351494 5'GT 19351494 Upstream 4bp
chr13 93879792 93879792 1 + G T DLBC 93879789 + 93879769 93879809 41 CGCCGGGGCGGATGTGAAGGCTCGGAGCTGCGGAGAGGTCC CGCCGGGGCGGATGTGAAGGCTCTGAGCTGCGGAGAGGTCC < 41bp 0.766471460946051 0.563687901236821 0.2103864 0.250482 prediction 0.405567119418461 Functional Loss - GPC6 ENSG00000183098 CDS Human protein_coding chr13:93879789 chr13:93879792 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_96442 0 0 1 0 1 GPC6 chr13:93879869 5'GT 93879869 Upstream 78bp
chrX 10188851 10188851 1 + C T UCEC 10188848 + 10188828 10188868 41 GTTTACAGTGACAGACCACACTCCGATGGAAACGGTGGTGG GTTTACAGTGACAGACCACACTCTGATGGAAACGGTGGTGG < 41bp 0.702782901324247 0.468700360997317 0.060602397 0.06947681 prediction 0.405565802648494 Functional Loss - CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10188848 chrX:10188851 nonsynonymous SNV 0.992 5 24 hm5C_associated_SNPs_96444 0 0 0 0 1 CLCN4 chrX:10188917 5'GT 10188917 Upstream 67bp
chr1 65871776 65871776 1 + T C rs61733018 65871775 + 65871755 65871795 41 CGTGAGCTTCTCAGCCATGCCTGGGGGCCAGAACGAACGTG CGTGAGCTTCTCAGCCATGCCCGGGGGCCAGAACGAACGTG < 41bp 0.827451168420587 0.624674016757703 0.40850613 0.90397656 prediction 0.405554303325769 Functional Loss - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65871775 chr1:65871776 synonymous SNV . 0 22 hm5C_associated_SNPs_96448 0 0 0 0 1 DNAJC6 chr1:65871816 5'GT 65871816 Upstream 41bp
chr17 48618874 48618874 1 + G A BLCA 48618871 + 48618851 48618891 41 CCCAGTTCCAAGCAAAATGGCACGAAGGAGCCAGATGCCCT CCCAGTTCCAAGCAAAATGGCACAAAGGAGCCAGATGCCCT < 41bp 0.702775300067833 0.458740872539796 0.17941242 0.21679786 prediction 0.405550600135666 Functional Loss - EPN3 ENSG00000049283 CDS Human protein_coding chr17:48618871 chr17:48618874 synonymous SNV . 0 24 hm5C_associated_SNPs_96451 0 0 0 0 1 EPN3 chr17:48618825 3'AG 48618825 Downstream 50bp
chr19 11464539 11464539 1 + C T BRCA 11464537 + 11464517 11464557 41 TCGGGGGCCTGTCCCAAGGCCTCGAGCCTAAGAGGTGAGGG TCGGGGGCCTGTCCCAAGGCCTTGAGCCTAAGAGGTGAGGG < 41bp 0.702775144536402 0.424336480971209 0.105568916 0.05368051 prediction 0.405550289072804 Functional Loss - CCDC159 ENSG00000183401 CDS Human protein_coding chr19:11464537 chr19:11464539 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_96452 0 0 0 0 2 CCDC159 chr19:11464468 3'AG 11464468 Downstream 72bp
chr19 11464539 11464539 1 + C T BRCA 11464537 + 11464517 11464557 41 TCGGGGGCCTGTCCCAAGGCCTCGAGCCTAAGAGGTGAGGG TCGGGGGCCTGTCCCAAGGCCTTGAGCCTAAGAGGTGAGGG < 41bp 0.702775144536402 0.424336480971209 0.105568916 0.05368051 prediction 0.405550289072804 Functional Loss - CCDC159 ENSG00000183401 CDS Human protein_coding chr19:11464537 chr19:11464539 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_96452 0 0 0 0 2 CCDC159 chr19:11464550 5'GT 11464550 Upstream 12bp
chr19 11464540 11464540 1 + G A UCEC 11464537 + 11464517 11464557 41 TCGGGGGCCTGTCCCAAGGCCTCGAGCCTAAGAGGTGAGGG TCGGGGGCCTGTCCCAAGGCCTCAAGCCTAAGAGGTGAGGG < 41bp 0.702775144536402 0.454883671898629 0.105568916 0.04000902 prediction 0.405550289072804 Functional Loss - CCDC159 ENSG00000183401 CDS Human protein_coding chr19:11464537 chr19:11464540 synonymous SNV . 0 24 hm5C_associated_SNPs_96453 0 0 0 0 2 CCDC159 chr19:11464468 3'AG 11464468 Downstream 73bp
chr19 11464540 11464540 1 + G A UCEC 11464537 + 11464517 11464557 41 TCGGGGGCCTGTCCCAAGGCCTCGAGCCTAAGAGGTGAGGG TCGGGGGCCTGTCCCAAGGCCTCAAGCCTAAGAGGTGAGGG < 41bp 0.702775144536402 0.454883671898629 0.105568916 0.04000902 prediction 0.405550289072804 Functional Loss - CCDC159 ENSG00000183401 CDS Human protein_coding chr19:11464537 chr19:11464540 synonymous SNV . 0 24 hm5C_associated_SNPs_96453 0 0 0 0 2 CCDC159 chr19:11464550 5'GT 11464550 Upstream 11bp
chr17 74464969 74464969 1 + C T rs149767882 74464966 + 74464946 74464986 41 CTCACCCCGGAGGACGCTGTCAGCGCCTTTGAGATCGAGCG CTCACCCCGGAGGACGCTGTCAGTGCCTTTGAGATCGAGCG < 41bp 0.721098327511771 0.518324944966056 0.39124304 0.2143656 prediction 0.405546765091429 Functional Loss - AANAT ENSG00000129673 CDS Human protein_coding chr17:74464966 chr17:74464969 synonymous SNV . 0 24 hm5C_associated_SNPs_96455 0 0 0 0 1 AANAT chr17:74464991 5'GT 74464991 Upstream 23bp
chr5 55185891 55185891 1 + C T UCEC 55185888 + 55185868 55185908 41 TTACAGAATATGTCATAGCTCTGCGATGTGCGGTCAAGGAG TTACAGAATATGTCATAGCTCTGTGATGTGCGGTCAAGGAG < 41bp 0.792228810872804 0.589460933890072 0.1502805 0.1282343 prediction 0.405535753965464 Functional Loss - IL31RA ENSG00000164509 CDS Human protein_coding chr5:55185888 chr5:55185891 stopgain 0.211 0 24 hm5C_associated_SNPs_96456 0 0 0 0 1 IL31RA chr5:55185798 3'AG 55185798 Downstream 94bp
chr9 99220743 99220743 1 + G T SARC 99220739 + 99220719 99220759 41 GGAGGGGATGCTCGAAAGAGCTGAGCGGAGATCCTACAGGG GGAGGGGATGCTCGAAAGAGCTGATCGGAGATCCTACAGGG < 41bp 0.760735334424658 0.557969637914697 0.31572717 0.33838975 prediction 0.405531393019921 Functional Loss - HABP4 ENSG00000130956 CDS Human protein_coding chr9:99220739 chr9:99220743 nonsynonymous SNV 0.897 1 25 hm5C_associated_SNPs_96458 0 0 1 0 2 HABP4 chr9:99220661 3'AG 99220661 Downstream 83bp
chr9 99220743 99220743 1 + G T SARC 99220739 + 99220719 99220759 41 GGAGGGGATGCTCGAAAGAGCTGAGCGGAGATCCTACAGGG GGAGGGGATGCTCGAAAGAGCTGATCGGAGATCCTACAGGG < 41bp 0.760735334424658 0.557969637914697 0.31572717 0.33838975 prediction 0.405531393019921 Functional Loss - HABP4 ENSG00000130956 CDS Human protein_coding chr9:99220739 chr9:99220743 nonsynonymous SNV 0.897 1 25 hm5C_associated_SNPs_96458 0 0 1 0 2 HABP4 chr9:99220823 5'GT 99220823 Upstream 81bp
chr18 32682030 32682030 1 + C T BLCA 32682028 + 32682008 32682048 41 GGAGTATGATCCTGTAGAGGCACGACAAGGGCAAGATGCAA GGAGTATGATCCTGTAGAGGCATGACAAGGGCAAGATGCAA < 41bp 0.702764712264292 0.404396738610465 0.096372604 0.15896466 prediction 0.405529424528584 Functional Loss - MAPRE2 ENSG00000166974 CDS Human protein_coding chr18:32682028 chr18:32682030 stopgain 0.998 1 23 hm5C_associated_SNPs_96461 0 0 1 0 1 MAPRE2 chr18:32682123 5'GT 32682123 Upstream 94bp
chr3 42251344 42251344 1 + G A UCEC 42251341 + 42251321 42251361 41 CCCCGGCCCGGTGTGGTCACCAAGGGCTTCCGGACGCTGGA CCCCGGCCCGGTGTGGTCACCAAAGGCTTCCGGACGCTGGA < 41bp 0.702762949264023 0.461846327047764 0.8841859 0.8104276 prediction 0.405525898528046 Functional Loss - TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42251341 chr3:42251344 synonymous SNV . 0 24 hm5C_associated_SNPs_96462 0 0 1 0 2 TRAK1 chr3:42251259 3'AG 42251259 Downstream 86bp
chr3 42251344 42251344 1 + G A UCEC 42251341 + 42251321 42251361 41 CCCCGGCCCGGTGTGGTCACCAAGGGCTTCCGGACGCTGGA CCCCGGCCCGGTGTGGTCACCAAAGGCTTCCGGACGCTGGA < 41bp 0.702762949264023 0.461846327047764 0.8841859 0.8104276 prediction 0.405525898528046 Functional Loss - TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42251341 chr3:42251344 synonymous SNV . 0 24 hm5C_associated_SNPs_96462 0 0 1 0 2 TRAK1 chr3:42251414 5'GT 42251414 Upstream 71bp
chr11 34149040 34149040 1 + G A LIHC 34149037 + 34149017 34149057 41 ATCCTGCAGATGCTGTGAAGCTGGGCCAGGCTGAACTAGTT ATCCTGCAGATGCTGTGAAGCTGAGCCAGGCTGAACTAGTT < 41bp 0.702756182729145 0.461108696514278 0.39247093 0.18879509 prediction 0.40551236545829 Functional Loss - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34149037 chr11:34149040 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_96465 0 0 1 0 1 NAT10 chr11:34149010 3'AG 34149010 Downstream 31bp
chr20 61162289 61162289 1 + G A rs149629841 61162286 + 61162266 61162306 41 GTGGCGCGGGGAGAGCCCGGCTCGGCACGTGGTCAGCTCCA GTGGCGCGGGGAGAGCCCGGCTCAGCACGTGGTCAGCTCCA < 41bp 0.828655845325401 0.625899779877645 0.31299332 0.20818022 prediction 0.405512130895511 Functional Loss - MIR1-1HG ENSG00000174407 CDS Human antisense chr20:61162286 chr20:61162289 synonymous SNV . 0 24 hm5C_associated_SNPs_96466 0 0 0 0 2 MIR1-1HG chr20:61162196 3'AG 61162196 Downstream 94bp
chr20 61162289 61162289 1 + G A rs149629841 61162286 + 61162266 61162306 41 GTGGCGCGGGGAGAGCCCGGCTCGGCACGTGGTCAGCTCCA GTGGCGCGGGGAGAGCCCGGCTCAGCACGTGGTCAGCTCCA < 41bp 0.828655845325401 0.625899779877645 0.31299332 0.20818022 prediction 0.405512130895511 Functional Loss - MIR1-1HG ENSG00000174407 CDS Human antisense chr20:61162286 chr20:61162289 synonymous SNV . 0 24 hm5C_associated_SNPs_96466 0 0 0 0 2 MIR1-1HG chr20:61162307 5'GT 61162307 Upstream 19bp
chr19 3204137 3204137 1 + G T UCEC 3204134 + 3204114 3204154 41 AGCACGCCTTCCTGCGGGAGCTGGAGACGGTGGGTGCCCCT AGCACGCCTTCCTGCGGGAGCTGTAGACGGTGGGTGCCCCT < 41bp 0.936988470713264 0.734236543890754 0.9095509 0.80495083 prediction 0.40550385364502 Functional Loss - NCLN ENSG00000125912 CDS Human protein_coding chr19:3204134 chr19:3204137 stopgain 0.605 1 24 hm5C_associated_SNPs_96474 0 0 1 0 1 NCLN chr19:3204142 5'GT 3204142 Upstream 6bp
chr6 35210839 35210839 1 + C T rs143191991 35210836 + 35210816 35210856 41 GCCTCCGACAGCGAATGGAACGGCGGCTGAAAGGATCCCTG GCCTCCGACAGCGAATGGAACGGTGGCTGAAAGGATCCCTG < 41bp 0.702749623590023 0.49057527989675 0.3982415 0.28059685 prediction 0.405499247180047 Functional Loss - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35210836 chr6:35210839 nonsynonymous SNV 0.955 4 24 hm5C_associated_SNPs_96476 0 0 0 0 1 SCUBE3 chr6:35210798 3'AG 35210798 Downstream 42bp
chr3 50255272 50255272 1 + G T UCEC 50255270 + 50255250 50255290 41 GCTACTTCACGCTCAACTCACAGGTTCTGACAGGTCAGGGC GCTACTTCACGCTCAACTCACATGTTCTGACAGGTCAGGGC < 41bp 0.702748643868757 0.351682826475305 0.8844472 0.3457461 prediction 0.405497287737514 Functional Loss - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50255270 chr3:50255272 . 0.989 2 23 hm5C_associated_SNPs_96477 0 0 1 0 1 SLC38A3 chr3:50255272 5'GT 50255272 Upstream 1bp
chr11 113851995 113851995 1 + C T UCEC 113851993 + 113851973 113852013 41 ATCACCAAGTTGTCCATCCCCACGGACAGCATCTGGGTCCC ATCACCAAGTTGTCCATCCCCATGGACAGCATCTGGGTCCC < 41bp 0.872184997710276 0.669439932670195 0.08724946 0.04606691 prediction 0.405490130080161 Functional Loss - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113851993 chr11:113851995 nonsynonymous SNV 0.769 3 23 hm5C_associated_SNPs_96479 0 0 0 1 2 HTR3A chr11:113851925 3'AG 113851925 Downstream 71bp
chr11 113851995 113851995 1 + C T UCEC 113851993 + 113851973 113852013 41 ATCACCAAGTTGTCCATCCCCACGGACAGCATCTGGGTCCC ATCACCAAGTTGTCCATCCCCATGGACAGCATCTGGGTCCC < 41bp 0.872184997710276 0.669439932670195 0.08724946 0.04606691 prediction 0.405490130080161 Functional Loss - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113851993 chr11:113851995 nonsynonymous SNV 0.769 3 23 hm5C_associated_SNPs_96479 0 0 0 1 2 HTR3A chr11:113852034 5'GT 113852034 Upstream 40bp
chr19 19166187 19166187 1 + G T PAAD 19166185 + 19166165 19166205 41 CCATCGTGGCTGCTATGACCCAGCATCTGACCAGCCCCCAG CCATCGTGGCTGCTATGACCCATCATCTGACCAGCCCCCAG < 41bp 0.919983540077122 0.717249011598096 0.41733634 0.06664881 prediction 0.405469056958052 Functional Loss - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19166185 chr19:19166187 nonsynonymous SNV 0.987 0 23 hm5C_associated_SNPs_96487 0 0 1 0 1 ARMC6 chr19:19166205 5'GT 19166205 Upstream 19bp
chr5 68737605 68737605 1 + G C rs535297949 68737601 + 68737581 68737621 41 CTCACTGCAACCTCCACCTCCCGGGTTCAAGCAATTCTCCT CTCACTGCAACCTCCACCTCCCGGCTTCAAGCAATTCTCCT < 41bp 0.702732513975006 0.404175283263484 0.18850797 0.050763518 prediction 0.405465027950011 Functional Loss - MARVELD2 ENSG00000152939 UTR3 Human protein_coding chr5:68737601 chr5:68737605 . . 0 25 hm5C_associated_SNPs_96491 0 0 0 1 1 MARVELD2 chr5:68737643 5'GT 68737643 Upstream 39bp
chr2 219221871 219221871 1 + G A HNSC 219221868 + 219221848 219221888 41 GTCCGGAGTGTCTGCCACTCCCAGAGGCCAATGCTGAAGCC GTCCGGAGTGTCTGCCACTCCCAAAGGCCAATGCTGAAGCC < 41bp 0.837752754842108 0.635021098686444 0.54125774 0.1483706 prediction 0.405463312311329 Functional Loss - CATIP ENSG00000158428 CDS Human protein_coding chr2:219221868 chr2:219221871 nonsynonymous SNV 0.884 0 24 hm5C_associated_SNPs_96495 0 0 0 0 2 CATIP chr2:219221818 3'AG 219221818 Downstream 54bp
chr2 219221871 219221871 1 + G A HNSC 219221868 + 219221848 219221888 41 GTCCGGAGTGTCTGCCACTCCCAGAGGCCAATGCTGAAGCC GTCCGGAGTGTCTGCCACTCCCAAAGGCCAATGCTGAAGCC < 41bp 0.837752754842108 0.635021098686444 0.54125774 0.1483706 prediction 0.405463312311329 Functional Loss - CATIP ENSG00000158428 CDS Human protein_coding chr2:219221868 chr2:219221871 nonsynonymous SNV 0.884 0 24 hm5C_associated_SNPs_96495 0 0 0 0 2 CATIP chr2:219221910 5'GT 219221910 Upstream 40bp
chr19 50881960 50881960 1 + G T UCEC 50881958 + 50881938 50881978 41 CCGGGGAAGGCGAGGGTGTCCAGCTAACAGCGGCTCAAGAA CCGGGGAAGGCGAGGGTGTCCATCTAACAGCGGCTCAAGAA < 41bp 0.702716744791387 0.348651646086669 0.86283696 0.56090987 prediction 0.405433489582774 Functional Loss - NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50881958 chr19:50881960 nonsynonymous SNV 0.004 2 23 hm5C_associated_SNPs_96502 0 0 1 0 1 NR1H2 chr19:50882053 5'GT 50882053 Upstream 94bp
chr15 64426924 64426924 1 + A T LUAD 64426920 + 64426900 64426940 41 GGCAGGATGCCCAAGCCACACTGCAGAAGAAGCGGGAGGCC GGCAGGATGCCCAAGCCACACTGCTGAAGAAGCGGGAGGCC < 41bp 0.915944898802899 0.71324006351562 0.34998807 0.42705238 prediction 0.405409670574559 Functional Loss - SNX1 ENSG00000028528 CDS Human protein_coding chr15:64426920 chr15:64426924 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_96505 0 0 1 0 2 SNX1 chr15:64426863 3'AG 64426863 Downstream 62bp
chr15 64426924 64426924 1 + A T LUAD 64426920 + 64426900 64426940 41 GGCAGGATGCCCAAGCCACACTGCAGAAGAAGCGGGAGGCC GGCAGGATGCCCAAGCCACACTGCTGAAGAAGCGGGAGGCC < 41bp 0.915944898802899 0.71324006351562 0.34998807 0.42705238 prediction 0.405409670574559 Functional Loss - SNX1 ENSG00000028528 CDS Human protein_coding chr15:64426920 chr15:64426924 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_96505 0 0 1 0 2 SNX1 chr15:64427006 5'GT 64427006 Upstream 83bp
chr3 127788405 127788405 1 + G T COAD 127788402 + 127788382 127788422 41 CTTCCTAGGCGCCATTGGGTCTGGAACCGGGATCCTGCTCG CTTCCTAGGCGCCATTGGGTCTGTAACCGGGATCCTGCTCG < 41bp 0.937046844237994 0.734349409318332 0.40953565 0.06278065 prediction 0.405394869839325 Functional Loss - SEC61A1 ENSG00000058262 CDS Human protein_coding chr3:127788402 chr3:127788405 nonsynonymous SNV 0.051 4 24 hm5C_associated_SNPs_96508 0 0 1 0 1 SEC61A1 chr3:127788319 3'AG 127788319 Downstream 87bp
chr21 45503121 45503121 1 + G A rs2071152 45503118 + 45503098 45503138 41 TGGCTCTGGAGGAGGGTGCCCACGTGCTGAGGTGCAGCCAC TGGCTCTGGAGGAGGGTGCCCACATGCTGAGGTGCAGCCAC < 41bp 0.816195442350858 0.61349882500058 0.45719036 0.8901075 prediction 0.405393234700557 Functional Loss - TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45503118 chr21:45503121 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_96509 0 0 0 0 1 TRAPPC10 chr21:45503183 5'GT 45503183 Upstream 63bp
chr3 9974537 9974537 1 + C T BLCA 9974535 + 9974515 9974555 41 CTCTTGAAACAGGACGTCCGCTCGGGGGGTGAGTGGGAGCA CTCTTGAAACAGGACGTCCGCTTGGGGGGTGAGTGGGAGCA < 41bp 0.816263473094779 0.613566909433788 0.2269691 0.31840873 prediction 0.405393127321981 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9974535 chr3:9974537 nonsynonymous SNV 0.878 0 23 hm5C_associated_SNPs_96510 0 0 1 0 1 IL17RC chr3:9974542 5'GT 9974542 Upstream 6bp
chr11 122735384 122735384 1 + G A SKCM 122735381 + 122735361 122735401 41 TCTAGTACATCGGAGATTGACAAGGAAGAGAAAGAACAAAC TCTAGTACATCGGAGATTGACAAAGAAGAGAAAGAACAAAC < 41bp 0.78212945102767 0.579434147824153 0.6677997 0.4276638 prediction 0.405390606407035 Functional Loss - CRTAM ENSG00000109943 CDS Human protein_coding chr11:122735381 chr11:122735384 synonymous SNV . 0 24 hm5C_associated_SNPs_96511 0 0 0 0 2 CRTAM chr11:122735344 3'AG 122735344 Downstream 41bp
chr11 122735384 122735384 1 + G A SKCM 122735381 + 122735361 122735401 41 TCTAGTACATCGGAGATTGACAAGGAAGAGAAAGAACAAAC TCTAGTACATCGGAGATTGACAAAGAAGAGAAAGAACAAAC < 41bp 0.78212945102767 0.579434147824153 0.6677997 0.4276638 prediction 0.405390606407035 Functional Loss - CRTAM ENSG00000109943 CDS Human protein_coding chr11:122735381 chr11:122735384 synonymous SNV . 0 24 hm5C_associated_SNPs_96511 0 0 0 0 2 CRTAM chr11:122735427 5'GT 122735427 Upstream 44bp
chr11 63753983 63753983 1 + G T CESC 63753981 + 63753961 63754001 41 GGAGCCGCTGGGCAGCGACTCCGAAGGTACAGATCCAAGGA GGAGCCGCTGGGCAGCGACTCCTAAGGTACAGATCCAAGGA < 41bp 0.702693722283714 0.438899460051177 0.17971644 0.16722515 prediction 0.405387444567428 Functional Loss - OTUB1 ENSG00000167770;ENSG00000256100 CDS Human other chr11:63753981 chr11:63753983 stopgain 0.972 0 23 hm5C_associated_SNPs_96512 0 0 1 0 1 OTUB1 chr11:63753986 5'GT 63753986 Upstream 4bp
chr16 25238439 25238439 1 + C T HNSC 25238436 + 25238416 25238456 41 TCCCGCCCGTGCTTTTGGACCTGCGGTGGTGGCCAACCACT TCCCGCCCGTGCTTTTGGACCTGTGGTGGTGGCCAACCACT < 41bp 0.755901429537722 0.553208707523407 0.39138252 0.29803365 prediction 0.405385444028629 Functional Loss - AQP8 ENSG00000103375 CDS Human protein_coding chr16:25238436 chr16:25238439 nonsynonymous SNV 0.931 5 24 hm5C_associated_SNPs_96514 0 0 0 0 2 AQP8 chr16:25238389 3'AG 25238389 Downstream 51bp
chr16 25238439 25238439 1 + C T HNSC 25238436 + 25238416 25238456 41 TCCCGCCCGTGCTTTTGGACCTGCGGTGGTGGCCAACCACT TCCCGCCCGTGCTTTTGGACCTGTGGTGGTGGCCAACCACT < 41bp 0.755901429537722 0.553208707523407 0.39138252 0.29803365 prediction 0.405385444028629 Functional Loss - AQP8 ENSG00000103375 CDS Human protein_coding chr16:25238436 chr16:25238439 nonsynonymous SNV 0.931 5 24 hm5C_associated_SNPs_96514 0 0 0 0 2 AQP8 chr16:25238523 5'GT 25238523 Upstream 85bp
chr17 34149836 34149836 1 + A C LIHC 34149832 + 34149812 34149852 41 GGAAAACTACAGCCACCACACACAAGGTAAGATTTACTGAC GGAAAACTACAGCCACCACACACACGGTAAGATTTACTGAC < 41bp 0.702690925869994 0.275508902629253 0.028852165 0.017742395 prediction 0.405381851739988 Functional Loss - TAF15 ENSG00000172660 CDS Human other chr17:34149832 chr17:34149836 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_96515 0 0 0 0 1 TAF15 chr17:34149837 5'GT 34149837 Upstream 2bp
chr5 161576192 161576192 1 + C T COAD 161576189 + 161576169 161576209 41 CCCCAAGGTCTCCTATGTCACAGCGATGGATCTCTTTGTAT CCCCAAGGTCTCCTATGTCACAGTGATGGATCTCTTTGTAT < 41bp 0.742904298726734 0.540216183734103 0.39744645 0.30414176 prediction 0.405376229985261 Functional Loss - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161576189 chr5:161576192 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_96517 0 0 0 0 1 GABRG2 chr5:161576114 3'AG 161576114 Downstream 79bp
chr11 44077605 44077605 1 + C T STAD 44077602 + 44077582 44077622 41 TTCTTCAGTTTGCCTGATAGCAACAGGACCCATGTGATCTG TTCTTCAGTTTGCCTGATAGCAATAGGACCCATGTGATCTG < 41bp 0.755517837307646 0.552833068676516 0.24392119 0.17597824 prediction 0.40536953726226 Functional Loss - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44077602 chr11:44077605 synonymous SNV . 0 24 hm5C_associated_SNPs_96520 0 0 0 0 2 ACCSL chr11:44077590 3'AG 44077590 Downstream 16bp
chr11 44077605 44077605 1 + C T STAD 44077602 + 44077582 44077622 41 TTCTTCAGTTTGCCTGATAGCAACAGGACCCATGTGATCTG TTCTTCAGTTTGCCTGATAGCAATAGGACCCATGTGATCTG < 41bp 0.755517837307646 0.552833068676516 0.24392119 0.17597824 prediction 0.40536953726226 Functional Loss - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44077602 chr11:44077605 synonymous SNV . 0 24 hm5C_associated_SNPs_96520 0 0 0 0 2 ACCSL chr11:44077635 5'GT 44077635 Upstream 31bp
chr12 51354842 51354842 1 + G A rs145639855 51354839 + 51354819 51354859 41 ATGTCAATTCATCTTATTCACATGAGAGTTGCTGCCCAAGG ATGTCAATTCATCTTATTCACATAAGAGTTGCTGCCCAAGG < 41bp 0.788387747437541 0.585703822111792 0.2620928 0.08307853 prediction 0.405367850651499 Functional Loss - HIGD1C ENSG00000214511 CDS Human protein_coding chr12:51354839 chr12:51354842 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_96521 0 0 0 0 2 HIGD1C chr12:51354751 3'AG 51354751 Downstream 92bp
chr12 51354842 51354842 1 + G A rs145639855 51354839 + 51354819 51354859 41 ATGTCAATTCATCTTATTCACATGAGAGTTGCTGCCCAAGG ATGTCAATTCATCTTATTCACATAAGAGTTGCTGCCCAAGG < 41bp 0.788387747437541 0.585703822111792 0.2620928 0.08307853 prediction 0.405367850651499 Functional Loss - HIGD1C ENSG00000214511 CDS Human protein_coding chr12:51354839 chr12:51354842 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_96521 0 0 0 0 2 HIGD1C chr12:51354885 5'GT 51354885 Upstream 44bp
chr5 126732432 126732432 1 + G A LUAD 126732429 + 126732409 126732449 41 GGAGCCACCTGCGACCACGTCACGGGGGAATGCCGCTGCCC GGAGCCACCTGCGACCACGTCACAGGGGAATGCCGCTGCCC < 41bp 0.84008355589831 0.637402685454005 0.8974969 0.12751395 prediction 0.405361740888611 Functional Loss - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126732429 chr5:126732432 synonymous SNV . 0 24 hm5C_associated_SNPs_96524 0 0 0 0 1 MEGF10 chr5:126732470 5'GT 126732470 Upstream 39bp
chr1 110714814 110714814 1 + G T LUAD 110714810 + 110714790 110714830 41 GGCACTATATATGTCCCCGCCTGGGGGGCATCGGCTTCTCC GGCACTATATATGTCCCCGCCTGGTGGGCATCGGCTTCTCC < 41bp 0.729950717453771 0.527271153391845 0.36354482 0.290399 prediction 0.405359128123853 Functional Loss - SLC6A17 ENSG00000197106 CDS Human protein_coding chr1:110714810 chr1:110714814 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_96525 0 0 0 0 1 SLC6A17 chr1:110714839 5'GT 110714839 Upstream 26bp
chr19 18685889 18685889 1 + C T COAD 18685887 + 18685867 18685907 41 GTGCTATGCTCGCCTTCACCCTCGTGCTGTCAACTGCCGCA GTGCTATGCTCGCCTTCACCCTTGTGCTGTCAACTGCCGCA < 41bp 0.852456486702308 0.649779832101413 0.13123623 0.15488559 prediction 0.405353309201789 Functional Loss - UBA52 ENSG00000221983 CDS Human protein_coding chr19:18685887 chr19:18685889 nonsynonymous SNV 0.987 2 23 hm5C_associated_SNPs_96530 0 0 1 0 1 UBA52 chr19:18685867 3'AG 18685867 Downstream 23bp
chr2 44933480 44933480 1 + G A UCEC 44933477 + 44933457 44933497 41 ATGACATGCTTGGCTGGGCTCATGGTAGGTCTTTTCTCCAT ATGACATGCTTGGCTGGGCTCATAGTAGGTCTTTTCTCCAT < 41bp 0.702675710656258 0.470843139667436 0.7435707 0.57678235 prediction 0.405351421312515 Functional Loss - CAMKMT ENSG00000143919 CDS Human protein_coding chr2:44933477 chr2:44933480 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_96533 0 0 1 0 2 CAMKMT chr2:44933426 3'AG 44933426 Downstream 55bp
chr2 44933480 44933480 1 + G A UCEC 44933477 + 44933457 44933497 41 ATGACATGCTTGGCTGGGCTCATGGTAGGTCTTTTCTCCAT ATGACATGCTTGGCTGGGCTCATAGTAGGTCTTTTCTCCAT < 41bp 0.702675710656258 0.470843139667436 0.7435707 0.57678235 prediction 0.405351421312515 Functional Loss - CAMKMT ENSG00000143919 CDS Human protein_coding chr2:44933477 chr2:44933480 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_96533 0 0 1 0 2 CAMKMT chr2:44933480 5'GT 44933480 Upstream 1bp
chr7 135312781 135312781 1 + G T UCEC 135312778 + 135312758 135312798 41 ACCCCAGTGGATCGCTACCGCCAGATTCTCCTCCCAGCTCT ACCCCAGTGGATCGCTACCGCCATATTCTCCTCCCAGCTCT < 41bp 0.702674874730685 0.30751877902711 0.8724965 0.8037709 prediction 0.405349749461371 Functional Loss - NUP205 ENSG00000155561 CDS Human protein_coding chr7:135312778 chr7:135312781 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_96534 0 0 1 1 2 NUP205 chr7:135312721 3'AG 135312721 Downstream 61bp
chr7 135312781 135312781 1 + G T UCEC 135312778 + 135312758 135312798 41 ACCCCAGTGGATCGCTACCGCCAGATTCTCCTCCCAGCTCT ACCCCAGTGGATCGCTACCGCCATATTCTCCTCCCAGCTCT < 41bp 0.702674874730685 0.30751877902711 0.8724965 0.8037709 prediction 0.405349749461371 Functional Loss - NUP205 ENSG00000155561 CDS Human protein_coding chr7:135312778 chr7:135312781 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_96534 0 0 1 1 2 NUP205 chr7:135312859 5'GT 135312859 Upstream 79bp
chr4 175237375 175237375 1 + A C LUAD 175237374 + 175237354 175237394 41 TCTGTCCTCTGGCTATAGTACAGCATCATCAGATTCAACTC TCTGTCCTCTGGCTATAGTACCGCATCATCAGATTCAACTC < 41bp 0.841982514365259 0.63930775732787 0.03504592 0.022613168 prediction 0.405349514074778 Functional Loss - CEP44 ENSG00000164118 CDS Human protein_coding chr4:175237374 chr4:175237375 synonymous SNV . 0 22 hm5C_associated_SNPs_96535 0 0 0 0 2 CEP44 chr4:175237317 3'AG 175237317 Downstream 59bp
chr4 175237375 175237375 1 + A C LUAD 175237374 + 175237354 175237394 41 TCTGTCCTCTGGCTATAGTACAGCATCATCAGATTCAACTC TCTGTCCTCTGGCTATAGTACCGCATCATCAGATTCAACTC < 41bp 0.841982514365259 0.63930775732787 0.03504592 0.022613168 prediction 0.405349514074778 Functional Loss - CEP44 ENSG00000164118 CDS Human protein_coding chr4:175237374 chr4:175237375 synonymous SNV . 0 22 hm5C_associated_SNPs_96535 0 0 0 0 2 CEP44 chr4:175237441 5'GT 175237441 Upstream 67bp
chr17 7535032 7535032 1 + C T SKCM 7535030 + 7535010 7535050 41 AATCAAATCCCGGGATATTTCTCCCTCCAGGGACTCAGGCA AATCAAATCCCGGGATATTTCTTCCTCCAGGGACTCAGGCA < 41bp 0.702674515926672 0.453036010980549 0.24726403 0.116909415 prediction 0.405349031853345 Functional Loss - SHBG ENSG00000129214 CDS Human protein_coding chr17:7535030 chr17:7535032 synonymous SNV . 0 23 hm5C_associated_SNPs_96536 0 0 0 0 2 SHBG chr17:7534961 3'AG 7534961 Downstream 72bp
chr17 7535032 7535032 1 + C T SKCM 7535030 + 7535010 7535050 41 AATCAAATCCCGGGATATTTCTCCCTCCAGGGACTCAGGCA AATCAAATCCCGGGATATTTCTTCCTCCAGGGACTCAGGCA < 41bp 0.702674515926672 0.453036010980549 0.24726403 0.116909415 prediction 0.405349031853345 Functional Loss - SHBG ENSG00000129214 CDS Human protein_coding chr17:7535030 chr17:7535032 synonymous SNV . 0 23 hm5C_associated_SNPs_96536 0 0 0 0 2 SHBG chr17:7535066 5'GT 7535066 Upstream 35bp
chr16 1551745 1551745 1 + G T SARC 1551741 + 1551721 1551761 41 GGATGGCGGCGTCCCCCAAGCACAGCTGGCGGGCTCTGACT GGATGGCGGCGTCCCCCAAGCACATCTGGCGGGCTCTGACT < 41bp 0.72408666785694 0.521415245778108 0.1606336 0.15469801 prediction 0.405342844157665 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1551741 chr16:1551745 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_96537 0 0 1 0 2 TELO2 chr16:1551664 3'AG 1551664 Downstream 82bp
chr16 1551745 1551745 1 + G T SARC 1551741 + 1551721 1551761 41 GGATGGCGGCGTCCCCCAAGCACAGCTGGCGGGCTCTGACT GGATGGCGGCGTCCCCCAAGCACATCTGGCGGGCTCTGACT < 41bp 0.72408666785694 0.521415245778108 0.1606336 0.15469801 prediction 0.405342844157665 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1551741 chr16:1551745 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_96537 0 0 1 0 2 TELO2 chr16:1551774 5'GT 1551774 Upstream 30bp
chr14 75904644 75904644 1 + G A UCEC 75904641 + 75904621 75904661 41 GCTATGATGCCTGGGCAGATCCCGGACCCTTCGGTGACCAC GCTATGATGCCTGGGCAGATCCCAGACCCTTCGGTGACCAC < 41bp 0.809573703934903 0.606905539100931 0.917754 0.4716398 prediction 0.405336329667945 Functional Loss - JDP2 ENSG00000140044 CDS Human protein_coding chr14:75904641 chr14:75904644 synonymous SNV . 0 24 hm5C_associated_SNPs_96540 0 0 1 0 1 JDP2 chr14:75904601 3'AG 75904601 Downstream 44bp
chr11 64034673 64034673 1 + A C UCEC 64034669 + 64034649 64034689 41 CCCTGTAGCTGGAGGAGGCCCAGAAGCAGCGGCATGACCGT CCCTGTAGCTGGAGGAGGCCCAGACGCAGCGGCATGACCGT < 41bp 0.702666095929052 0.293343019718791 0.58906835 0.81915665 prediction 0.405332191858103 Functional Loss - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64034669 chr11:64034673 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_96544 0 0 1 0 2 PLCB3 chr11:64034657 3'AG 64034657 Downstream 17bp
chr11 64034673 64034673 1 + A C UCEC 64034669 + 64034649 64034689 41 CCCTGTAGCTGGAGGAGGCCCAGAAGCAGCGGCATGACCGT CCCTGTAGCTGGAGGAGGCCCAGACGCAGCGGCATGACCGT < 41bp 0.702666095929052 0.293343019718791 0.58906835 0.81915665 prediction 0.405332191858103 Functional Loss - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64034669 chr11:64034673 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_96544 0 0 1 0 2 PLCB3 chr11:64034743 5'GT 64034743 Upstream 71bp
chr1 33747327 33747327 1 + C T UCEC 33747324 + 33747304 33747344 41 CCTCCTACCTGGCCCAGCACCTGCGCATCCACCTGGGCGTC CCTCCTACCTGGCCCAGCACCTGTGCATCCACCTGGGCGTC < 41bp 0.724103488659883 0.521438474371971 0.12399241 0.06816417 prediction 0.405330028575824 Functional Loss - ZNF362 ENSG00000160094 CDS Human protein_coding chr1:33747324 chr1:33747327 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_96545 0 0 1 0 1 ZNF362 chr1:33747412 5'GT 33747412 Upstream 86bp
chr3 101476732 101476732 1 + T C rs77015203 101476731 + 101476711 101476751 41 CTGAGGCTGCAGGGCATTAACTTGGGCCTAGAAGATGATGG CTGAGGCTGCAGGGCATTAACCTGGGCCTAGAAGATGATGG < 41bp 0.702664284501068 0.448459302627131 0.44766462 0.8731268 prediction 0.405328569002135 Functional Loss - CEP97 ENSG00000182504 CDS Human protein_coding chr3:101476731 chr3:101476732 synonymous SNV . 0 22 hm5C_associated_SNPs_96547 0 0 1 0 1 CEP97 chr3:101476655 3'AG 101476655 Downstream 78bp
chr15 57838340 57838340 1 + G A SKCM 57838337 + 57838317 57838357 41 CTGAGGAGGAAATCGACAGACTGGAAAGTTCTAAAAAGAAG CTGAGGAGGAAATCGACAGACTGAAAAGTTCTAAAAAGAAG < 41bp 0.702662686578356 0.472158832256065 0.38053763 0.4662143 prediction 0.405325373156713 Functional Loss - CGNL1 ENSG00000128849 CDS Human protein_coding chr15:57838337 chr15:57838340 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_96548 0 0 0 0 2 CGNL1 chr15:57838274 3'AG 57838274 Downstream 67bp
chr15 57838340 57838340 1 + G A SKCM 57838337 + 57838317 57838357 41 CTGAGGAGGAAATCGACAGACTGGAAAGTTCTAAAAAGAAG CTGAGGAGGAAATCGACAGACTGAAAAGTTCTAAAAAGAAG < 41bp 0.702662686578356 0.472158832256065 0.38053763 0.4662143 prediction 0.405325373156713 Functional Loss - CGNL1 ENSG00000128849 CDS Human protein_coding chr15:57838337 chr15:57838340 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_96548 0 0 0 0 2 CGNL1 chr15:57838437 5'GT 57838437 Upstream 98bp
chr4 41940649 41940649 1 + G T COAD 41940647 + 41940627 41940667 41 GATGACCAATAAACTGGACACGGCAATGTGGCTTTCTCGCT GATGACCAATAAACTGGACACGTCAATGTGGCTTTCTCGCT < 41bp 0.702662487951989 0.377591914498356 0.02489835 0.01378274 prediction 0.405324975903979 Functional Loss - TMEM33 ENSG00000109133 CDS Human protein_coding chr4:41940647 chr4:41940649 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_96549 0 0 1 0 2 TMEM33 chr4:41940619 3'AG 41940619 Downstream 31bp
chr4 41940649 41940649 1 + G T COAD 41940647 + 41940627 41940667 41 GATGACCAATAAACTGGACACGGCAATGTGGCTTTCTCGCT GATGACCAATAAACTGGACACGTCAATGTGGCTTTCTCGCT < 41bp 0.702662487951989 0.377591914498356 0.02489835 0.01378274 prediction 0.405324975903979 Functional Loss - TMEM33 ENSG00000109133 CDS Human protein_coding chr4:41940647 chr4:41940649 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_96549 0 0 1 0 2 TMEM33 chr4:41940713 5'GT 41940713 Upstream 65bp
chr11 130332457 130332457 1 + T C rs116897071 130332456 + 130332436 130332476 41 GAGGATCTGCCGGGCGCCAGCTACACCCTGAGCCAGCAGTG GAGGATCTGCCGGGCGCCAGCCACACCCTGAGCCAGCAGTG < 41bp 0.70266048101022 0.43268685132241 0.31378722 0.21949708 prediction 0.405320962020439 Functional Loss - ADAMTS15 ENSG00000166106 CDS Human protein_coding chr11:130332456 chr11:130332457 nonsynonymous SNV 0.955 3 22 hm5C_associated_SNPs_96550 0 0 0 0 1 ADAMTS15 chr11:130332392 3'AG 130332392 Downstream 66bp
chr19 1251880 1251880 1 + G C LUSC 1251879 + 1251859 1251899 41 CAGTCCGTGATGCAAGCTCTCGAGAGTCTCACGGAGACGCA CAGTCCGTGATGCAAGCTCTCCAGAGTCTCACGGAGACGCA < 41bp 0.903951019036471 0.701291567498958 0.9037564 0.87689495 prediction 0.405318903075026 Functional Loss - MIDN ENSG00000167470 CDS Human protein_coding chr19:1251879 chr19:1251880 nonsynonymous SNV 0.862 3 22 hm5C_associated_SNPs_96552 0 0 1 0 2 MIDN chr19:1251838 3'AG 1251838 Downstream 43bp
chr19 1251880 1251880 1 + G C LUSC 1251879 + 1251859 1251899 41 CAGTCCGTGATGCAAGCTCTCGAGAGTCTCACGGAGACGCA CAGTCCGTGATGCAAGCTCTCCAGAGTCTCACGGAGACGCA < 41bp 0.903951019036471 0.701291567498958 0.9037564 0.87689495 prediction 0.405318903075026 Functional Loss - MIDN ENSG00000167470 CDS Human protein_coding chr19:1251879 chr19:1251880 nonsynonymous SNV 0.862 3 22 hm5C_associated_SNPs_96552 0 0 1 0 2 MIDN chr19:1251900 5'GT 1251900 Upstream 21bp
chr12 113875759 113875759 1 + C T LUAD 113875756 + 113875736 113875776 41 CAGCCATCTACTCAGGCCTCCTGCGGAGGCTCCAGGCCGAG CAGCCATCTACTCAGGCCTCCTGTGGAGGCTCCAGGCCGAG < 41bp 0.710212186446788 0.507555112082468 0.53253984 0.22810048 prediction 0.405314148728639 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113875756 chr12:113875759 nonsynonymous SNV 0.059 2 24 hm5C_associated_SNPs_96554 0 0 0 0 1 SDSL chr12:113875691 3'AG 113875691 Downstream 69bp
chr17 56403021 56403021 1 + G T UCEC 56403017 + 56402997 56403037 41 GTCCCGGGCTCGCTGGCGGGCTAGGGCCTTCCGACACAACT GTCCCGGGCTCGCTGGCGGGCTAGTGCCTTCCGACACAACT < 41bp 0.709797052039916 0.50714088919519 0.23837495 0.09947422 prediction 0.405312325689452 Functional Loss - TSPOAP1 ENSG00000005379 CDS Human antisense chr17:56403017 chr17:56403021 synonymous SNV . 0 25 hm5C_associated_SNPs_96557 0 0 0 0 1 TSPOAP1-AS1 chr17:56403089 5'GT 56403089 Upstream 69bp
chr11 61539128 61539128 1 + C T UCEC 61539126 + 61539106 61539146 41 CCCCATCGCCACCCTGGCCTCCCCAGGGTCCGCTCTCCCCG CCCCATCGCCACCCTGGCCTCCTCAGGGTCCGCTCTCCCCG < 41bp 0.702656130885205 0.408889080754968 0.16156042 0.05309382 prediction 0.405312261770411 Functional Loss - MYRF ENSG00000124920 CDS Human protein_coding chr11:61539126 chr11:61539128 synonymous SNV . 0 23 hm5C_associated_SNPs_96558 0 0 1 0 1 MYRF chr11:61539222 5'GT 61539222 Upstream 95bp
chr6 168440821 168440821 1 + G A SKCM 168440818 + 168440798 168440838 41 TCAGGGCGAAGCACCCCACCCTGGTGCACGCGGATTCCTCC TCAGGGCGAAGCACCCCACCCTGATGCACGCGGATTCCTCC < 41bp 0.702655596684602 0.447061994780204 0.5428806 0.23733526 prediction 0.405311193369203 Functional Loss - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168440818 chr6:168440821 nonsynonymous SNV 0.022 2 24 hm5C_associated_SNPs_96559 0 0 0 0 2 KIF25 chr6:168440745 3'AG 168440745 Downstream 77bp
chr6 168440821 168440821 1 + G A SKCM 168440818 + 168440798 168440838 41 TCAGGGCGAAGCACCCCACCCTGGTGCACGCGGATTCCTCC TCAGGGCGAAGCACCCCACCCTGATGCACGCGGATTCCTCC < 41bp 0.702655596684602 0.447061994780204 0.5428806 0.23733526 prediction 0.405311193369203 Functional Loss - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168440818 chr6:168440821 nonsynonymous SNV 0.022 2 24 hm5C_associated_SNPs_96559 0 0 0 0 2 KIF25 chr6:168440896 5'GT 168440896 Upstream 76bp
chr11 67187027 67187027 1 - C A LUSC 67187029 - 67187009 67187049 41 ACTGTGTCCACCACTGCACCCAGCTCTGCCCGCGGGTGCAG ACTGTGTCCACCACTGCACCCATCTCTGCCCGCGGGTGCAG < 41bp 0.702654234641848 0.33931182742295 0.12577996 0.030334502 prediction 0.405308469283696 Functional Loss - CARNS1 ENSG00000172508;ENSG00000172531 CDS Human other chr11:67187029 chr11:67187027 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_96560 0 0 0 0 1 CARNS1 chr11:67187068 3'AG 67187068 Downstream 42bp
chr14 103995543 103995543 1 + C T rs576996356 103995541 + 103995521 103995561 41 GGAGCCGGAAGTGTTGTGGCCGCCGCCGCCGCGCGTCGCGG GGAGCCGGAAGTGTTGTGGCCGTCGCCGCCGCGCGTCGCGG < 41bp 0.721030987889951 0.518381838462964 0.37753242 0.40808988 prediction 0.405298298853974 Functional Loss - TRMT61A ENSG00000166166 UTR5 Human protein_coding chr14:103995541 chr14:103995543 . . 0 23 hm5C_associated_SNPs_96565 0 0 1 0 1 TRMT61A chr14:103995598 5'GT 103995598 Upstream 56bp
chr3 122545721 122545721 1 + C T UCEC 122545718 + 122545698 122545738 41 GAATGCAGCACCATTTCTCTCTACGACGTGGTTTTCTGCAG GAATGCAGCACCATTTCTCTCTATGACGTGGTTTTCTGCAG < 41bp 0.702649069920215 0.483362870072765 0.1898646 0.2182115 prediction 0.40529813984043 Functional Loss - DIRC2 ENSG00000138463 CDS Human protein_coding chr3:122545718 chr3:122545721 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_96566 0 0 0 0 1 DIRC2 chr3:122545647 3'AG 122545647 Downstream 75bp
chrX 13677862 13677862 1 + G A rs5935646 13677859 + 13677839 13677879 41 GGTTCAAGCAATTCTCCTGCCTCGGCCTTCCGAGTAGCTGG GGTTCAAGCAATTCTCCTGCCTCAGCCTTCCGAGTAGCTGG < 41bp 0.702647080968679 0.49262140171062 0.22263438 0.21307212 prediction 0.405294161937358 Functional Loss - TCEANC ENSG00000176896 CDS Human protein_coding chrX:13677859 chrX:13677862 synonymous SNV . 0 24 hm5C_associated_SNPs_96568 0 0 0 0 1 TCEANC chrX:13677887 5'GT 13677887 Upstream 26bp
chr2 220110800 220110800 1 + G T LUSC 220110797 + 220110777 220110817 41 GCTACCTCTTCATCCAGAAACTGGGGGAGGGGTGAGTGTTT GCTACCTCTTCATCCAGAAACTGTGGGAGGGGTGAGTGTTT < 41bp 0.702645426172884 0.351841598162356 0.7974216 0.48794872 prediction 0.405290852345768 Functional Loss - STK16 ENSG00000115661 CDS Human protein_coding chr2:220110797 chr2:220110800 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_96569 0 0 1 0 1 STK16 chr2:220110807 5'GT 220110807 Upstream 8bp
chr20 30583056 30583056 1 + C T COAD 30583054 + 30583034 30583074 41 CTGCTGGTGCACCGCGGTGGCGCGCCCGACCTGCTGCCGGG CTGCTGGTGCACCGCGGTGGCGTGCCCGACCTGCTGCCGGG < 41bp 0.702643865866064 0.458075818084502 0.27871716 0.35589272 prediction 0.405287731732127 Functional Loss - XKR7 ENSG00000260903 CDS Human protein_coding chr20:30583054 chr20:30583056 nonsynonymous SNV 0.524 0 23 hm5C_associated_SNPs_96570 0 0 0 0 1 XKR7 chr20:30583073 5'GT 30583073 Upstream 18bp
chr17 78061420 78061420 1 + G T LUSC 78061417 + 78061397 78061437 41 CTGCCATAGGCAAGATTGAGCAGGAGAAGAAGGAGCAGAAG CTGCCATAGGCAAGATTGAGCAGTAGAAGAAGGAGCAGAAG < 41bp 0.702638832818806 0.43402961371065 0.8293306 0.34796992 prediction 0.405277665637612 Functional Loss - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78061417 chr17:78061420 stopgain 0.804 0 24 hm5C_associated_SNPs_96576 0 0 0 0 1 CCDC40 chr17:78061406 3'AG 78061406 Downstream 15bp
chr12 113307811 113307811 1 + G C HNSC 113307807 + 113307787 113307827 41 GATTCAGAGAGCTGGGACCACAGTGGGGGTGCTGGAGACTC GATTCAGAGAGCTGGGACCACAGTCGGGGTGCTGGAGACTC < 41bp 0.702638603624891 0.392186875835559 0.79410994 0.24045652 prediction 0.405277207249782 Functional Loss - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113307807 chr12:113307811 nonsynonymous SNV 0.005 3 25 hm5C_associated_SNPs_96577 0 0 0 0 1 RPH3A chr12:113307844 5'GT 113307844 Upstream 34bp
chr1 156834214 156834214 1 + G T UCEC 156834210 + 156834190 156834230 41 ATCTGAGGGGCCTGGGGGAGCTGAGAAACCTGTGAGGGAAA ATCTGAGGGGCCTGGGGGAGCTGATAAACCTGTGAGGGAAA < 41bp 0.734385534424766 0.531746969813582 0.8675971 0.8777194 prediction 0.405277129222367 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156834210 chr1:156834214 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_96578 0 0 0 0 2 NTRK1 chr1:156834146 3'AG 156834146 Downstream 69bp
chr1 156834214 156834214 1 + G T UCEC 156834210 + 156834190 156834230 41 ATCTGAGGGGCCTGGGGGAGCTGAGAAACCTGTGAGGGAAA ATCTGAGGGGCCTGGGGGAGCTGATAAACCTGTGAGGGAAA < 41bp 0.734385534424766 0.531746969813582 0.8675971 0.8777194 prediction 0.405277129222367 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156834210 chr1:156834214 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_96578 0 0 0 0 2 NTRK1 chr1:156834220 5'GT 156834220 Upstream 7bp
chr19 38024289 38024289 1 + G T LUAD 38024287 + 38024267 38024307 41 GGATTGGTGAGGCAGCATGCCCGGGCTGCCACTGTTGGGGT GGATTGGTGAGGCAGCATGCCCTGGCTGCCACTGTTGGGGT < 41bp 0.702636764459623 0.343626264068297 0.33700067 0.025582105 prediction 0.405273528919246 Functional Loss - ZNF793 ENSG00000188227 CDS Human protein_coding chr19:38024287 chr19:38024289 synonymous SNV . 0 23 hm5C_associated_SNPs_96579 0 0 1 0 2 ZNF793 chr19:38024210 3'AG 38024210 Downstream 80bp
chr19 38024289 38024289 1 + G T LUAD 38024287 + 38024267 38024307 41 GGATTGGTGAGGCAGCATGCCCGGGCTGCCACTGTTGGGGT GGATTGGTGAGGCAGCATGCCCTGGCTGCCACTGTTGGGGT < 41bp 0.702636764459623 0.343626264068297 0.33700067 0.025582105 prediction 0.405273528919246 Functional Loss - ZNF793 ENSG00000188227 CDS Human protein_coding chr19:38024287 chr19:38024289 synonymous SNV . 0 23 hm5C_associated_SNPs_96579 0 0 1 0 2 ZNF793 chr19:38024305 5'GT 38024305 Upstream 17bp
chr5 177546865 177546865 1 + C T STAD 177546863 + 177546843 177546883 41 TACTACCGGGAACATTCTCGCGCGGGTGACTTCAGCAAGAC TACTACCGGGAACATTCTCGCGTGGGTGACTTCAGCAAGAC < 41bp 0.843469326035575 0.640837415241992 0.9119085 0.923494 prediction 0.405263821587166 Functional Loss - N4BP3 ENSG00000145911 CDS Human protein_coding chr5:177546863 chr5:177546865 nonsynonymous SNV 0.759 0 23 hm5C_associated_SNPs_96583 0 0 0 0 1 N4BP3 chr5:177546914 5'GT 177546914 Upstream 50bp
chr9 117029830 117029830 1 + G T LUAD 117029828 + 117029808 117029848 41 CCGGGCCTTCCTGGGGAAGCCGGGATGAAGGTGAGGTGGGA CCGGGCCTTCCTGGGGAAGCCGTGATGAAGGTGAGGTGGGA < 41bp 0.702631201061136 0.365359146202022 0.89879614 0.75706065 prediction 0.405262402122271 Functional Loss - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117029828 chr9:117029830 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_96585 0 0 1 0 2 COL27A1 chr9:117029784 3'AG 117029784 Downstream 47bp
chr9 117029830 117029830 1 + G T LUAD 117029828 + 117029808 117029848 41 CCGGGCCTTCCTGGGGAAGCCGGGATGAAGGTGAGGTGGGA CCGGGCCTTCCTGGGGAAGCCGTGATGAAGGTGAGGTGGGA < 41bp 0.702631201061136 0.365359146202022 0.89879614 0.75706065 prediction 0.405262402122271 Functional Loss - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117029828 chr9:117029830 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_96585 0 0 1 0 2 COL27A1 chr9:117029837 5'GT 117029837 Upstream 8bp
chr16 681361 681361 1 + G T SARC 681359 + 681339 681379 41 ACCCGGGCGTGTGCCCCAACCAGCTCAGCCCCAACCTGTGG ACCCGGGCGTGTGCCCCAACCATCTCAGCCCCAACCTGTGG < 41bp 0.702630294464711 0.350698124454857 0.3749568 0.0877485 prediction 0.405260588929421 Functional Loss - WFIKKN1 ENSG00000127578 CDS Human protein_coding chr16:681359 chr16:681361 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_96586 0 0 1 0 1 WFIKKN1 chr16:681424 5'GT 681424 Upstream 64bp
chr11 63174107 63174107 1 + G A SKCM 63174104 + 63174084 63174124 41 GCACCTTGGGCACTGAAATACATGAACCGTCGAGCAAGCCA GCACCTTGGGCACTGAAATACATAAACCGTCGAGCAAGCCA < 41bp 0.702629419912041 0.454199700472591 0.027623683 0.016706556 prediction 0.405258839824082 Functional Loss - SLC22A9 ENSG00000149742 CDS Human protein_coding chr11:63174104 chr11:63174107 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_96587 0 0 0 0 1 SLC22A9 chr11:63174183 5'GT 63174183 Upstream 77bp
chr1 1222598 1222598 1 + C T rs74046669 1222596 + 1222576 1222616 41 GATATCCTGGCCCTGCTGCCCGCGGCATGGGAGGACAGCCA GATATCCTGGCCCTGCTGCCCGTGGCATGGGAGGACAGCCA < 41bp 0.835564518345513 0.632935119350726 0.73191977 0.46877125 prediction 0.405258797989573 Functional Loss - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1222596 chr1:1222598 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_96588 0 0 0 0 1 SCNN1D chr1:1222679 5'GT 1222679 Upstream 82bp
chr7 142566338 142566338 1 + C T CESC 142566335 + 142566315 142566355 41 CAGGCCCTGTGGGCCGGGGGCGCCGAAAGCCTGCAGATGAC CAGGCCCTGTGGGCCGGGGGCGCTGAAAGCCTGCAGATGAC < 41bp 0.702625816217894 0.486090606208502 0.8563591 0.8339921 prediction 0.405251632435788 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142566335 chr7:142566338 synonymous SNV . 0 24 hm5C_associated_SNPs_96590 0 0 0 0 1 EPHB6 chr7:142566247 3'AG 142566247 Downstream 92bp
chr20 13098330 13098330 1 + C T BLCA 13098327 + 13098307 13098347 41 GATGTGCTCATGGGCACATTCACCAAAAGTTTTGGAGCTTC GATGTGCTCATGGGCACATTCACTAAAAGTTTTGGAGCTTC < 41bp 0.802592723435353 0.599967442128136 0.104846686 0.03744334 prediction 0.405250562614435 Functional Loss - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13098327 chr20:13098330 synonymous SNV . 0 24 hm5C_associated_SNPs_96592 0 0 0 0 1 SPTLC3 chr20:13098372 5'GT 13098372 Upstream 43bp
chr6 168430282 168430282 1 + G T LUSC 168430279 + 168430259 168430299 41 TTCCCAGATGACATGGACCTCAGGTCAGCTTCAGCGTGAGA TTCCCAGATGACATGGACCTCAGTTCAGCTTCAGCGTGAGA < 41bp 0.702625244828385 0.307727550228756 0.34427118 0.23413178 prediction 0.40525048965677 Functional Loss - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168430279 chr6:168430282 nonsynonymous SNV 0.007 2 24 hm5C_associated_SNPs_96593 0 0 0 0 1 KIF25 chr6:168430357 5'GT 168430357 Upstream 76bp
chr8 70541910 70541910 1 + G A SKCM 70541907 + 70541887 70541927 41 CACTGGCAGACAGCCCCGTTCTGGAACCGTAAGTTGCTTGT CACTGGCAGACAGCCCCGTTCTGAAACCGTAAGTTGCTTGT < 41bp 0.806050616917735 0.603425530045183 0.37200606 0.1755178 prediction 0.405250173745105 Functional Loss - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70541907 chr8:70541910 stopgain 0.998 1 24 hm5C_associated_SNPs_96594 0 0 0 0 1 SULF1 chr8:70541914 5'GT 70541914 Upstream 5bp
chr15 23444052 23444052 1 + G A PRAD 23444049 + 23444029 23444069 41 CAGTGAGGGGGAGGAGGCACCTCGGCCCATGCCGAGTGTCC CAGTGAGGGGGAGGAGGCACCTCAGCCCATGCCGAGTGTCC < 41bp 0.787342307464667 0.584721247304181 0.7273559 0.4431929 prediction 0.405242120320973 Functional Loss - GOLGA8EP ENSG00000175676 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:23444049 chr15:23444052 . . 0 24 hm5C_associated_SNPs_96596 0 0 0 0 2 GOLGA8EP chr15:23444007 3'AG 23444007 Downstream 46bp
chr15 23444052 23444052 1 + G A PRAD 23444049 + 23444029 23444069 41 CAGTGAGGGGGAGGAGGCACCTCGGCCCATGCCGAGTGTCC CAGTGAGGGGGAGGAGGCACCTCAGCCCATGCCGAGTGTCC < 41bp 0.787342307464667 0.584721247304181 0.7273559 0.4431929 prediction 0.405242120320973 Functional Loss - GOLGA8EP ENSG00000175676 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:23444049 chr15:23444052 . . 0 24 hm5C_associated_SNPs_96596 0 0 0 0 2 GOLGA8EP chr15:23444098 5'GT 23444098 Upstream 47bp
chr6 161139850 161139850 1 + C T ESCA 161139848 + 161139828 161139868 41 TGTGACTCCTCCCCAGTATCCACGGAACAATTGGCTCCCAC TGTGACTCCTCCCCAGTATCCATGGAACAATTGGCTCCCAC < 41bp 0.848436006310498 0.645817739099951 0.7497185 0.48027223 prediction 0.405236534421093 Functional Loss - PLG ENSG00000122194 CDS Human protein_coding chr6:161139848 chr6:161139850 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_96597 0 0 0 0 1 PLG chr6:161139870 5'GT 161139870 Upstream 21bp
chr1 32084987 32084987 1 + C T LUAD 32084985 + 32084965 32085005 41 GTCGTGGCCCTGGTGGGCAACACGCTGGGTAGGTCCAGGGC GTCGTGGCCCTGGTGGGCAACATGCTGGGTAGGTCCAGGGC < 41bp 0.70261731854666 0.439096242551148 0.15488356 0.26492727 prediction 0.40523463709332 Functional Loss - HCRTR1 ENSG00000121764 CDS Human protein_coding chr1:32084985 chr1:32084987 nonsynonymous SNV 0.750 0 23 hm5C_associated_SNPs_96599 0 0 0 0 1 HCRTR1 chr1:32084992 5'GT 32084992 Upstream 6bp
chr2 71211805 71211805 1 + G A GBM 71211802 + 71211782 71211822 41 GCTCCACGGCAAGCTGCACCCAGGCCACTCTCTGGTCTCCA GCTCCACGGCAAGCTGCACCCAGACCACTCTCTGGTCTCCA < 41bp 0.816691817529941 0.614074730121432 0.86808753 0.45996824 prediction 0.405234174817019 Functional Loss - ANKRD53 ENSG00000144031 CDS Human protein_coding chr2:71211802 chr2:71211805 nonsynonymous SNV 0.011 0 24 hm5C_associated_SNPs_96600 0 0 0 0 1 ANKRD53 chr2:71211741 3'AG 71211741 Downstream 65bp
chr4 2632848 2632848 1 + C T UCEC 2632845 + 2632825 2632865 41 TCCCTCCTGCTTGAGGAGTACGGCGCCCTCTGCCAGGCCGC TCCCTCCTGCTTGAGGAGTACGGTGCCCTCTGCCAGGCCGC < 41bp 0.70261704266236 0.499869841810473 0.51199496 0.39070413 prediction 0.40523408532472 Functional Loss - FAM193A ENSG00000125386 CDS Human protein_coding chr4:2632845 chr4:2632848 synonymous SNV . 0 24 hm5C_associated_SNPs_96601 0 0 0 0 1 FAM193A chr4:2632896 5'GT 2632896 Upstream 49bp
chr7 148947810 148947810 1 + C T SKCM 148947807 + 148947787 148947827 41 GAGAATGATGGCGTCTGTTTCACCGAGCAGGAATGGGAGAA GAGAATGATGGCGTCTGTTTCACTGAGCAGGAATGGGAGAA < 41bp 0.70261455382164 0.482115042829855 0.8323072 0.691234 prediction 0.405229107643279 Functional Loss - ZNF212 ENSG00000170260 CDS Human protein_coding chr7:148947807 chr7:148947810 synonymous SNV . 0 24 hm5C_associated_SNPs_96603 0 0 1 0 2 ZNF212 chr7:148947772 3'AG 148947772 Downstream 39bp
chr7 148947810 148947810 1 + C T SKCM 148947807 + 148947787 148947827 41 GAGAATGATGGCGTCTGTTTCACCGAGCAGGAATGGGAGAA GAGAATGATGGCGTCTGTTTCACTGAGCAGGAATGGGAGAA < 41bp 0.70261455382164 0.482115042829855 0.8323072 0.691234 prediction 0.405229107643279 Functional Loss - ZNF212 ENSG00000170260 CDS Human protein_coding chr7:148947807 chr7:148947810 synonymous SNV . 0 24 hm5C_associated_SNPs_96603 0 0 1 0 2 ZNF212 chr7:148947898 5'GT 148947898 Upstream 89bp
chr2 237998594 237998594 1 + C T UCEC 237998592 + 237998572 237998612 41 TCTATACAACCATCAACGCTCACCAGTGGTCTGAGACGGTC TCTATACAACCATCAACGCTCATCAGTGGTCTGAGACGGTC < 41bp 0.879208870357362 0.676605464281331 0.13991144 0.15403888 prediction 0.405206812152061 Functional Loss - COPS8 ENSG00000198612 CDS Human protein_coding chr2:237998592 chr2:237998594 synonymous SNV . 0 23 hm5C_associated_SNPs_96608 0 0 1 0 2 COPS8 chr2:237998505 3'AG 237998505 Downstream 90bp
chr2 237998594 237998594 1 + C T UCEC 237998592 + 237998572 237998612 41 TCTATACAACCATCAACGCTCACCAGTGGTCTGAGACGGTC TCTATACAACCATCAACGCTCATCAGTGGTCTGAGACGGTC < 41bp 0.879208870357362 0.676605464281331 0.13991144 0.15403888 prediction 0.405206812152061 Functional Loss - COPS8 ENSG00000198612 CDS Human protein_coding chr2:237998592 chr2:237998594 synonymous SNV . 0 23 hm5C_associated_SNPs_96608 0 0 1 0 2 COPS8 chr2:237998637 5'GT 237998637 Upstream 44bp
chr6 70916872 70916872 1 + C T COAD 70916869 + 70916849 70916889 41 AGCTCTGGGTTTGCCAGGCTCACCAGGTGCCCCAGGCCCAC AGCTCTGGGTTTGCCAGGCTCACTAGGTGCCCCAGGCCCAC < 41bp 0.719522336494605 0.516920682833155 0.20253626 0.11709702 prediction 0.4052033073229 Functional Loss - COL19A1 ENSG00000082293 CDS Human protein_coding chr6:70916869 chr6:70916872 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_96609 0 0 0 0 1 COL19A1 chr6:70916851 3'AG 70916851 Downstream 22bp
chr20 44569210 44569210 1 + T C rs115906516 44569209 + 44569189 44569229 41 AAGCCCAGAAAGCGGCAGCTCTCGGAAGAGCAGCCAAGCGG AAGCCCAGAAAGCGGCAGCTCCCGGAAGAGCAGCCAAGCGG < 41bp 0.850457493713002 0.647857017633022 0.15167165 0.2772283 prediction 0.40520095215996 Functional Loss - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44569209 chr20:44569210 nonsynonymous SNV 0.993 1 22 hm5C_associated_SNPs_96610 0 0 0 0 2 PCIF1 chr20:44569114 3'AG 44569114 Downstream 97bp
chr20 44569210 44569210 1 + T C rs115906516 44569209 + 44569189 44569229 41 AAGCCCAGAAAGCGGCAGCTCTCGGAAGAGCAGCCAAGCGG AAGCCCAGAAAGCGGCAGCTCCCGGAAGAGCAGCCAAGCGG < 41bp 0.850457493713002 0.647857017633022 0.15167165 0.2772283 prediction 0.40520095215996 Functional Loss - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44569209 chr20:44569210 nonsynonymous SNV 0.993 1 22 hm5C_associated_SNPs_96610 0 0 0 0 2 PCIF1 chr20:44569251 5'GT 44569251 Upstream 42bp
chr1 171759689 171759689 1 + G T KIRC 171759687 + 171759667 171759707 41 AGTCCATTGATAAGAGTTACCTGTGTTGTGAACACCACAAA AGTCCATTGATAAGAGTTACCTTTGTTGTGAACACCACAAA < 41bp 0.702599178691395 0.35399119515366 0.20468417 0.093072236 prediction 0.40519835738279 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171759687 chr1:171759689 synonymous SNV . 0 23 hm5C_associated_SNPs_96612 0 0 1 0 2 METTL13 chr1:171759592 3'AG 171759592 Downstream 98bp
chr1 171759689 171759689 1 + G T KIRC 171759687 + 171759667 171759707 41 AGTCCATTGATAAGAGTTACCTGTGTTGTGAACACCACAAA AGTCCATTGATAAGAGTTACCTTTGTTGTGAACACCACAAA < 41bp 0.702599178691395 0.35399119515366 0.20468417 0.093072236 prediction 0.40519835738279 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171759687 chr1:171759689 synonymous SNV . 0 23 hm5C_associated_SNPs_96612 0 0 1 0 2 METTL13 chr1:171759756 5'GT 171759756 Upstream 68bp
chr1 1115080 1115080 1 + G T SARC 1115076 + 1115056 1115096 41 TCTGCACCCAGCACCGGCCTCACAGCCCGGCCCCTGCCCTG TCTGCACCCAGCACCGGCCTCACATCCCGGCCCCTGCCCTG < 41bp 0.702598780518694 0.478455623726666 0.09128207 0.03557259 prediction 0.405197561037387 Functional Loss - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1115076 chr1:1115080 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_96613 0 0 0 0 2 TTLL10 chr1:1115037 3'AG 1115037 Downstream 44bp
chr1 1115080 1115080 1 + G T SARC 1115076 + 1115056 1115096 41 TCTGCACCCAGCACCGGCCTCACAGCCCGGCCCCTGCCCTG TCTGCACCCAGCACCGGCCTCACATCCCGGCCCCTGCCCTG < 41bp 0.702598780518694 0.478455623726666 0.09128207 0.03557259 prediction 0.405197561037387 Functional Loss - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1115076 chr1:1115080 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_96613 0 0 0 0 2 TTLL10 chr1:1115117 5'GT 1115117 Upstream 38bp
chr17 4686202 4686202 1 + G A SKCM 4686199 + 4686179 4686219 41 GGATCGGTGCGAGGCGCCCCCTCGCGTGGTCCCCTGGAATG GGATCGGTGCGAGGCGCCCCCTCACGTGGTCCCCTGGAATG < 41bp 0.83469641212614 0.632100688176224 0.36208445 0.20028332 prediction 0.405191447899832 Functional Loss - TM4SF5 ENSG00000142484 CDS Human protein_coding chr17:4686199 chr17:4686202 nonsynonymous SNV 0.172 0 24 hm5C_associated_SNPs_96615 0 0 1 0 1 TM4SF5 chr17:4686149 3'AG 4686149 Downstream 54bp
chr1 171227356 171227356 1 + A C SKCM 171227355 + 171227335 171227375 41 CTTGGGGGGCTGTGGAGATTCACCGTAAGTGGGGTTTCAAC CTTGGGGGGCTGTGGAGATTCCCCGTAAGTGGGGTTTCAAC < 41bp 0.844253701272995 0.641658226522378 0.09062803 0.084788114 prediction 0.405190949501233 Functional Loss - FMO1 ENSG00000010932 CDS Human protein_coding chr1:171227355 chr1:171227356 nonsynonymous SNV 0.977 3 22 hm5C_associated_SNPs_96617 0 0 0 0 1 FMO1 chr1:171227358 5'GT 171227358 Upstream 3bp
chrX 153171506 153171506 1 + C T rs13306213 153171503 + 153171483 153171523 41 CTCTTCATCTTCGCCCAGCGCAACGTGGAAGGTGGCAGCGG CTCTTCATCTTCGCCCAGCGCAATGTGGAAGGTGGCAGCGG < 41bp 0.702594282540212 0.496642734411546 0.24859568 0.24208462 prediction 0.405188565080423 Functional Loss - AVPR2 ENSG00000126895 CDS Human protein_coding chrX:153171503 chrX:153171506 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_96619 0 0 0 0 1 AVPR2 chrX:153171473 3'AG 153171473 Downstream 34bp
chr20 4680122 4680122 1 + G A SKCM 4680119 + 4680099 4680139 41 GTGGTGGCTGGGGACAGCCTCATGGTGGTGGCTGGGGTCAA GTGGTGGCTGGGGACAGCCTCATAGTGGTGGCTGGGGTCAA < 41bp 0.819562539900529 0.616968982333167 0.88165045 0.69320726 prediction 0.405187115134723 Functional Loss - PRNP ENSG00000171867 CDS Human protein_coding chr20:4680119 chr20:4680122 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_96621 0 0 1 0 1 PRNP chr20:4680125 5'GT 4680125 Upstream 4bp
chr1 17296805 17296805 1 + C T UCEC 17296802 + 17296782 17296822 41 CCCTGAACACCGTCCAGAAGCTGCAAGACGAGCGGCGGCTG CCCTGAACACCGTCCAGAAGCTGTAAGACGAGCGGCGGCTG < 41bp 0.745403656494831 0.542814629438299 0.80846906 0.7990892 prediction 0.405178054113064 Functional Loss - CROCC ENSG00000058453 CDS Human protein_coding chr1:17296802 chr1:17296805 stopgain 0.991 0 24 hm5C_associated_SNPs_96625 0 0 1 0 1 CROCC chr1:17296748 3'AG 17296748 Downstream 58bp
chrX 153657425 153657425 1 + G A SKCM 153657422 + 153657402 153657442 41 GGGCTCCTGCGGCCGACACTCATGAAGGCCACATCACCAGC GGGCTCCTGCGGCCGACACTCATAAAGGCCACATCACCAGC < 41bp 0.826660761457891 0.62407252529116 0.34849912 0.23180345 prediction 0.405176472333462 Functional Loss - ATP6AP1 ENSG00000071553 CDS Human protein_coding chrX:153657422 chrX:153657425 nonsynonymous SNV 0.421 3 24 hm5C_associated_SNPs_96626 0 0 1 0 2 ATP6AP1 chrX:153657394 3'AG 153657394 Downstream 32bp
chrX 153657425 153657425 1 + G A SKCM 153657422 + 153657402 153657442 41 GGGCTCCTGCGGCCGACACTCATGAAGGCCACATCACCAGC GGGCTCCTGCGGCCGACACTCATAAAGGCCACATCACCAGC < 41bp 0.826660761457891 0.62407252529116 0.34849912 0.23180345 prediction 0.405176472333462 Functional Loss - ATP6AP1 ENSG00000071553 CDS Human protein_coding chrX:153657422 chrX:153657425 nonsynonymous SNV 0.421 3 24 hm5C_associated_SNPs_96626 0 0 1 0 2 ATP6AP1 chrX:153657520 5'GT 153657520 Upstream 96bp
chr13 113030772 113030772 1 + C T HNSC 113030769 + 113030749 113030789 41 GCTGTTGGCAAGAAACTGAGCTCCGGCCGAGAACCGTGATT GCTGTTGGCAAGAAACTGAGCTCTGGCCGAGAACCGTGATT < 41bp 0.721960426302096 0.519372797179839 0.26523662 0.30960828 prediction 0.405175258244515 Functional Loss - SPACA7 ENSG00000153498 CDS Human protein_coding chr13:113030769 chr13:113030772 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_96627 0 0 0 0 1 SPACA7 chr13:113030793 5'GT 113030793 Upstream 22bp
chr16 31235598 31235598 1 + C T HNSC 31235595 + 31235575 31235615 41 GGAGTGCTCGGAGCAGAAGGCGCCGCCGGCCGGGGAGGACC GGAGTGCTCGGAGCAGAAGGCGCTGCCGGCCGGGGAGGACC < 41bp 0.722160806387956 0.519574148930088 0.88517725 0.86868656 prediction 0.405173314915736 Functional Loss - TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31235595 chr16:31235598 nonsynonymous SNV 0.913 2 24 hm5C_associated_SNPs_96629 0 0 0 0 1 TRIM72 chr16:31235502 3'AG 31235502 Downstream 97bp
chr4 166389003 166389003 1 + C T LIHC 166389001 + 166388981 166389021 41 AAGAAAATTGTGGATCAAAACACAAAGGTAGTGACCACGGG AAGAAAATTGTGGATCAAAACATAAAGGTAGTGACCACGGG < 41bp 0.702582108738835 0.413545180998954 0.19625172 0.22661439 prediction 0.40516421747767 Functional Loss - CPE ENSG00000109472 CDS Human protein_coding chr4:166389001 chr4:166389003 nonsynonymous SNV 0.909 0 23 hm5C_associated_SNPs_96630 0 0 1 0 1 CPE chr4:166389007 5'GT 166389007 Upstream 5bp
chr11 65064651 65064651 1 + A C LUSC 65064650 + 65064630 65064670 41 ACCAAAGGGCAGGTGGGAGGCACCTTCGCCCGACTCTACCT ACCAAAGGGCAGGTGGGAGGCCCCTTCGCCCGACTCTACCT < 41bp 0.702579957879702 0.451728146923806 0.6920979 0.52755463 prediction 0.405159915759404 Functional Loss - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65064650 chr11:65064651 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_96635 0 0 0 0 1 POLA2 chr11:65064591 3'AG 65064591 Downstream 61bp
chr10 11789413 11789413 1 + A C BLCA 11789409 + 11789389 11789429 41 CACTTGCAATGCTGAAGTCTCTCCAAAGTGACATTCTTCAT CACTTGCAATGCTGAAGTCTCTCCCAAGTGACATTCTTCAT < 41bp 0.702576668314776 0.262032524370047 0.95823115 0.01449272 prediction 0.405153336629552 Functional Loss - ECHDC3 ENSG00000134463 CDS Human protein_coding chr10:11789409 chr10:11789413 nonsynonymous SNV 0.031 0 25 hm5C_associated_SNPs_96637 0 0 0 0 2 ECHDC3 chr10:11789348 3'AG 11789348 Downstream 66bp
chr10 11789413 11789413 1 + A C BLCA 11789409 + 11789389 11789429 41 CACTTGCAATGCTGAAGTCTCTCCAAAGTGACATTCTTCAT CACTTGCAATGCTGAAGTCTCTCCCAAGTGACATTCTTCAT < 41bp 0.702576668314776 0.262032524370047 0.95823115 0.01449272 prediction 0.405153336629552 Functional Loss - ECHDC3 ENSG00000134463 CDS Human protein_coding chr10:11789409 chr10:11789413 nonsynonymous SNV 0.031 0 25 hm5C_associated_SNPs_96637 0 0 0 0 2 ECHDC3 chr10:11789469 5'GT 11789469 Upstream 57bp
chr19 49094931 49094931 1 + C T UCEC 49094928 + 49094908 49094948 41 CTCTATCATTACTCCAAGATCGCCGGGCAGTTAAAGGACCC CTCTATCATTACTCCAAGATCGCTGGGCAGTTAAAGGACCC < 41bp 0.767388950594398 0.564812482015368 0.46347725 0.15025428 prediction 0.40515293715806 Functional Loss - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49094928 chr19:49094931 synonymous SNV . 0 24 hm5C_associated_SNPs_96638 0 0 0 0 2 SULT2B1 chr19:49094866 3'AG 49094866 Downstream 66bp
chr19 49094931 49094931 1 + C T UCEC 49094928 + 49094908 49094948 41 CTCTATCATTACTCCAAGATCGCCGGGCAGTTAAAGGACCC CTCTATCATTACTCCAAGATCGCTGGGCAGTTAAAGGACCC < 41bp 0.767388950594398 0.564812482015368 0.46347725 0.15025428 prediction 0.40515293715806 Functional Loss - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49094928 chr19:49094931 synonymous SNV . 0 24 hm5C_associated_SNPs_96638 0 0 0 0 2 SULT2B1 chr19:49094992 5'GT 49094992 Upstream 62bp
chr6 46797136 46797136 1 + G T SKCM 46797132 + 46797112 46797152 41 GTTCAGCACCAGCTCGGGGTCCGCGGAAGAGGCAGCCCTAC GTTCAGCACCAGCTCGGGGTCCGCTGAAGAGGCAGCCCTAC < 41bp 0.702574782835265 0.478860089660112 0.78414094 0.17717159 prediction 0.405149565670531 Functional Loss - MEP1A ENSG00000112818 CDS Human protein_coding chr6:46797132 chr6:46797136 synonymous SNV . 0 25 hm5C_associated_SNPs_96640 0 0 0 0 1 MEP1A chr6:46797093 3'AG 46797093 Downstream 44bp
chr1 200878525 200878525 1 + G T UCEC 200878521 + 200878501 200878541 41 GGAGGGGCCAGTCGCAGTCTCTGAGGTAAGAGACAGCTTCC GGAGGGGCCAGTCGCAGTCTCTGATGTAAGAGACAGCTTCC < 41bp 0.73043950576877 0.527865461278449 0.5663489 0.33738548 prediction 0.405148088980642 Functional Loss - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200878521 chr1:200878525 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_96643 0 0 0 0 1 C1orf106 chr1:200878525 5'GT 200878525 Upstream 1bp
chr15 74324955 74324955 1 + G T OV 74324952 + 74324932 74324972 41 TGAAGGCCCAGGTTCAGGCCCTGGGGCTGGCTGAAGCCCAG TGAAGGCCCAGGTTCAGGCCCTGTGGCTGGCTGAAGCCCAG < 41bp 0.702573487442225 0.340300060603321 0.70286125 0.39266437 prediction 0.405146974884451 Functional Loss - PML ENSG00000140464 CDS Human protein_coding chr15:74324952 chr15:74324955 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_96645 0 0 1 0 1 PML chr15:74324913 3'AG 74324913 Downstream 43bp
chr3 127323800 127323800 1 + G A UCEC 127323797 + 127323777 127323817 41 CGCCGCCAGGTGGAGCGGGCCACGGAGGACGGCGAGGAGGA CGCCGCCAGGTGGAGCGGGCCACAGAGGACGGCGAGGAGGA < 41bp 0.823583818884435 0.621012403299317 0.7675717 0.5576245 prediction 0.405142831170236 Functional Loss - MCM2 ENSG00000073111 CDS Human protein_coding chr3:127323797 chr3:127323800 synonymous SNV . 0 24 hm5C_associated_SNPs_96646 0 0 1 0 2 MCM2 chr3:127323720 3'AG 127323720 Downstream 81bp
chr3 127323800 127323800 1 + G A UCEC 127323797 + 127323777 127323817 41 CGCCGCCAGGTGGAGCGGGCCACGGAGGACGGCGAGGAGGA CGCCGCCAGGTGGAGCGGGCCACAGAGGACGGCGAGGAGGA < 41bp 0.823583818884435 0.621012403299317 0.7675717 0.5576245 prediction 0.405142831170236 Functional Loss - MCM2 ENSG00000073111 CDS Human protein_coding chr3:127323797 chr3:127323800 synonymous SNV . 0 24 hm5C_associated_SNPs_96646 0 0 1 0 2 MCM2 chr3:127323739 3'AG 127323739 Downstream 62bp
chr18 12030352 12030352 1 + C T COAD 12030350 + 12030330 12030370 41 GTCTGTCCCCAGGTGGACCCCTCGACCTCATGGCTTGCAGA GTCTGTCCCCAGGTGGACCCCTTGACCTCATGGCTTGCAGA < 41bp 0.849913261572045 0.647341894675766 0.7658646 0.11316338 prediction 0.405142733792558 Functional Loss - IMPA2 ENSG00000141401 CDS Human protein_coding chr18:12030350 chr18:12030352 synonymous SNV . 0 23 hm5C_associated_SNPs_96647 0 0 0 0 1 IMPA2 chr18:12030342 3'AG 12030342 Downstream 11bp
chr21 45213265 45213265 1 + C T HNSC 45213262 + 45213242 45213282 41 AGTGGACGGGCATTGACAGGCTGCGCCTGGATAAATTCTAC AGTGGACGGGCATTGACAGGCTGTGCCTGGATAAATTCTAC < 41bp 0.721146617413791 0.518575297853653 0.041358024 0.055719495 prediction 0.405142639120275 Functional Loss - RRP1 ENSG00000160214 CDS Human protein_coding chr21:45213262 chr21:45213265 nonsynonymous SNV 0.486 4 24 hm5C_associated_SNPs_96648 1 0 1 0 2 RRP1 chr21:45213200 3'AG 45213200 Downstream 66bp
chr21 45213265 45213265 1 + C T HNSC 45213262 + 45213242 45213282 41 AGTGGACGGGCATTGACAGGCTGCGCCTGGATAAATTCTAC AGTGGACGGGCATTGACAGGCTGTGCCTGGATAAATTCTAC < 41bp 0.721146617413791 0.518575297853653 0.041358024 0.055719495 prediction 0.405142639120275 Functional Loss - RRP1 ENSG00000160214 CDS Human protein_coding chr21:45213262 chr21:45213265 nonsynonymous SNV 0.486 4 24 hm5C_associated_SNPs_96648 1 0 1 0 2 RRP1 chr21:45213285 5'GT 45213285 Upstream 21bp
chr12 130830316 130830316 1 + G A COAD 130830313 + 130830293 130830333 41 TTAAGGACTCCAGATATCTGCTGGATTTCAGGAGTTATCGT TTAAGGACTCCAGATATCTGCTGAATTTCAGGAGTTATCGT < 41bp 0.702570984804113 0.466398199120053 0.33899713 0.2268509 prediction 0.405141969608226 Functional Loss - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130830313 chr12:130830316 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_96649 0 0 0 0 1 PIWIL1 chr12:130830298 3'AG 130830298 Downstream 19bp
chr17 5257753 5257753 1 + G A CESC 5257750 + 5257730 5257770 41 CAGTAGTGTGTGCTTTAACTCAAGAAGAATCTTCAGCCCAG CAGTAGTGTGTGCTTTAACTCAAAAAGAATCTTCAGCCCAG < 41bp 0.802886724586086 0.600318181855728 0.8702438 0.29250824 prediction 0.405137085460717 Functional Loss - RABEP1 ENSG00000029725 CDS Human protein_coding chr17:5257750 chr17:5257753 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_96650 0 0 1 0 2 RABEP1 chr17:5257654 3'AG 5257654 Downstream 100bp
chr17 5257753 5257753 1 + G A CESC 5257750 + 5257730 5257770 41 CAGTAGTGTGTGCTTTAACTCAAGAAGAATCTTCAGCCCAG CAGTAGTGTGTGCTTTAACTCAAAAAGAATCTTCAGCCCAG < 41bp 0.802886724586086 0.600318181855728 0.8702438 0.29250824 prediction 0.405137085460717 Functional Loss - RABEP1 ENSG00000029725 CDS Human protein_coding chr17:5257750 chr17:5257753 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_96650 0 0 1 0 2 RABEP1 chr17:5257785 5'GT 5257785 Upstream 33bp
chr4 185940213 185940213 1 + G T GBM 185940211 + 185940191 185940231 41 ATGGCAGGGAAGTGCCCGCACGGGACTTTGAGTGTGGAGGA ATGGCAGGGAAGTGCCCGCACGTGACTTTGAGTGTGGAGGA < 41bp 0.916621223208104 0.714053096514414 0.8738085 0.4064071 prediction 0.405136253387379 Functional Loss - HELT ENSG00000187821 CDS Human protein_coding chr4:185940211 chr4:185940213 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_96651 0 0 0 0 1 HELT chr4:185940241 5'GT 185940241 Upstream 29bp
chr3 36526484 36526484 1 + C T ESCA 36526481 + 36526461 36526501 41 CTCTCCAGCCAAAGGGGTTTCGGCGTTACTACAGCTCCCCC CTCTCCAGCCAAAGGGGTTTCGGTGTTACTACAGCTCCCCC < 41bp 0.741144036058164 0.53857736850208 0.9547787 0.9440831 prediction 0.405133335112168 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36526481 chr3:36526484 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_96652 0 0 0 0 2 STAC chr3:36526469 3'AG 36526469 Downstream 16bp
chr3 36526484 36526484 1 + C T ESCA 36526481 + 36526461 36526501 41 CTCTCCAGCCAAAGGGGTTTCGGCGTTACTACAGCTCCCCC CTCTCCAGCCAAAGGGGTTTCGGTGTTACTACAGCTCCCCC < 41bp 0.741144036058164 0.53857736850208 0.9547787 0.9440831 prediction 0.405133335112168 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36526481 chr3:36526484 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_96652 0 0 0 0 2 STAC chr3:36526550 5'GT 36526550 Upstream 67bp
chr2 71740928 71740928 1 + G C COAD 71740927 + 71740907 71740947 41 CCTGGATCAAAGCGGAGGCCCGGGGGCTCCCACCACCCCAA CCTGGATCAAAGCGGAGGCCCCGGGGCTCCCACCACCCCAA < 41bp 0.855353398946925 0.652786732932127 0.9295177 0.9030411 prediction 0.405133332029596 Functional Loss - DYSF ENSG00000135636 CDS Human protein_coding chr2:71740927 chr2:71740928 synonymous SNV . 0 22 hm5C_associated_SNPs_96653 0 0 0 0 1 DYSF chr2:71740846 3'AG 71740846 Downstream 83bp
chr17 4648175 4648175 1 + C T rs61743945 4648172 + 4648152 4648192 41 TCTCTGTCTGCAGGATTTAACTCCGGGTTTGCTCTCAAGGA TCTCTGTCTGCAGGATTTAACTCTGGGTTTGCTCTCAAGGA < 41bp 0.775142986592939 0.572578520604637 0.90110743 0.43586627 prediction 0.405128931976606 Functional Loss - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4648172 chr17:4648175 synonymous SNV . 0 24 hm5C_associated_SNPs_96655 0 0 0 0 3 ZMYND15 chr17:4648141 3'AG 4648141 Downstream 35bp
chr17 4648175 4648175 1 + C T rs61743945 4648172 + 4648152 4648192 41 TCTCTGTCTGCAGGATTTAACTCCGGGTTTGCTCTCAAGGA TCTCTGTCTGCAGGATTTAACTCTGGGTTTGCTCTCAAGGA < 41bp 0.775142986592939 0.572578520604637 0.90110743 0.43586627 prediction 0.405128931976606 Functional Loss - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4648172 chr17:4648175 synonymous SNV . 0 24 hm5C_associated_SNPs_96655 0 0 0 0 3 ZMYND15 chr17:4648165 3'AG 4648165 Downstream 11bp
chr17 4648175 4648175 1 + C T rs61743945 4648172 + 4648152 4648192 41 TCTCTGTCTGCAGGATTTAACTCCGGGTTTGCTCTCAAGGA TCTCTGTCTGCAGGATTTAACTCTGGGTTTGCTCTCAAGGA < 41bp 0.775142986592939 0.572578520604637 0.90110743 0.43586627 prediction 0.405128931976606 Functional Loss - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4648172 chr17:4648175 synonymous SNV . 0 24 hm5C_associated_SNPs_96655 0 0 0 0 3 ZMYND15 chr17:4648223 5'GT 4648223 Upstream 49bp
chr17 57292214 57292214 1 + G A BRCA 57292211 + 57292191 57292231 41 CGGTATTCTACCCAGAAAAACAAGAAATCACCCTTCCACCT CGGTATTCTACCCAGAAAAACAAAAAATCACCCTTCCACCT < 41bp 0.806952256610551 0.604396140277166 0.9351636 0.9335747 prediction 0.405112232666771 Functional Loss - SMG8 ENSG00000167447;ENSG00000265303 CDS Human other chr17:57292211 chr17:57292214 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_96659 0 0 0 0 1 SMG8 chr17:57292166 3'AG 57292166 Downstream 49bp
chr10 72513682 72513682 1 + C T rs2587475 72513679 + 72513659 72513699 41 AAGGTCATGCCGGCCAAAGCCTGCGCCGGGGACCGGCCTGA AAGGTCATGCCGGCCAAAGCCTGTGCCGGGGACCGGCCTGA < 41bp 0.780112486012351 0.577560780866151 0.08825967 0.06982255 prediction 0.405103410292401 Functional Loss - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72513679 chr10:72513682 synonymous SNV . 0 24 hm5C_associated_SNPs_96663 0 0 0 0 1 ADAMTS14 chr10:72513763 5'GT 72513763 Upstream 82bp
chr17 79639146 79639146 1 + G T UCEC 79639142 + 79639122 79639162 41 TGAGGTTGTCCTGCAGCCCCCAGAGCTGACTGCCAGGCCCC TGAGGTTGTCCTGCAGCCCCCAGATCTGACTGCCAGGCCCC < 41bp 0.7115146814736 0.508965270339998 0.42964435 0.3719293 prediction 0.405098822267204 Functional Loss - CCDC137 ENSG00000185298 CDS Human protein_coding chr17:79639142 chr17:79639146 nonsynonymous SNV 0.934 1 25 hm5C_associated_SNPs_96665 0 0 1 0 2 CCDC137 chr17:79639106 3'AG 79639106 Downstream 41bp
chr17 79639146 79639146 1 + G T UCEC 79639142 + 79639122 79639162 41 TGAGGTTGTCCTGCAGCCCCCAGAGCTGACTGCCAGGCCCC TGAGGTTGTCCTGCAGCCCCCAGATCTGACTGCCAGGCCCC < 41bp 0.7115146814736 0.508965270339998 0.42964435 0.3719293 prediction 0.405098822267204 Functional Loss - CCDC137 ENSG00000185298 CDS Human protein_coding chr17:79639142 chr17:79639146 nonsynonymous SNV 0.934 1 25 hm5C_associated_SNPs_96665 0 0 1 0 2 CCDC137 chr17:79639185 5'GT 79639185 Upstream 40bp
chr11 63988119 63988119 1 + A C rs138031026 63988118 + 63988098 63988138 41 GCCTCGTTGCCCCCCGTTTCCAGCGAAAGTTCAAGGCCAAG GCCTCGTTGCCCCCCGTTTCCCGCGAAAGTTCAAGGCCAAG < 41bp 0.702548072606403 0.430675376091045 0.8378997 0.36756724 prediction 0.405096145212805 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63988118 chr11:63988119 nonsynonymous SNV 0.992 2 22 hm5C_associated_SNPs_96667 0 0 1 0 1 FERMT3 chr11:63988141 5'GT 63988141 Upstream 23bp
chr1 32049152 32049152 1 + G A STAD 32049149 + 32049129 32049169 41 GGCACCATCCGCCCATCTTCCTCGGTCATGAACATGCATGA GGCACCATCCGCCCATCTTCCTCAGTCATGAACATGCATGA < 41bp 0.820081649015733 0.617533577536316 0.1373345 0.119709164 prediction 0.405096142958834 Functional Loss - TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32049149 chr1:32049152 synonymous SNV . 0 24 hm5C_associated_SNPs_96668 0 0 1 0 2 TINAGL1 chr1:32049062 3'AG 32049062 Downstream 91bp
chr1 32049152 32049152 1 + G A STAD 32049149 + 32049129 32049169 41 GGCACCATCCGCCCATCTTCCTCGGTCATGAACATGCATGA GGCACCATCCGCCCATCTTCCTCAGTCATGAACATGCATGA < 41bp 0.820081649015733 0.617533577536316 0.1373345 0.119709164 prediction 0.405096142958834 Functional Loss - TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32049149 chr1:32049152 synonymous SNV . 0 24 hm5C_associated_SNPs_96668 0 0 1 0 2 TINAGL1 chr1:32049176 5'GT 32049176 Upstream 25bp
chr1 228003906 228003906 1 + C T SKCM 228003903 + 228003883 228003923 41 GGCCTCCACGTCTGCGGCGGCTCCATCCTCAATGAGTACTG GGCCTCCACGTCTGCGGCGGCTCTATCCTCAATGAGTACTG < 41bp 0.731827345993315 0.529279738975703 0.86772585 0.5300951 prediction 0.405095214035225 Functional Loss - PRSS38 ENSG00000185888 CDS Human protein_coding chr1:228003903 chr1:228003906 synonymous SNV . 0 24 hm5C_associated_SNPs_96669 0 0 0 0 1 PRSS38 chr1:228003953 5'GT 228003953 Upstream 48bp
chr9 676999 676999 1 + C T STAD 676996 + 676976 677016 41 GCTCACACCACAAAGGTTAACGGCAGTGCCTCAGGTAACCC GCTCACACCACAAAGGTTAACGGTAGTGCCTCAGGTAACCC < 41bp 0.73200358808497 0.529460338737087 0.37497315 0.30813324 prediction 0.405086498695767 Functional Loss - KANK1 ENSG00000107104 CDS Human protein_coding chr9:676996 chr9:676999 synonymous SNV . 0 24 hm5C_associated_SNPs_96671 0 0 0 0 1 KANK1 chr9:677009 5'GT 677009 Upstream 11bp
chr19 55324750 55324750 1 + G T UCEC 55324746 + 55324726 55324766 41 GCGGAAGCAGGATGGGAGCACGCAGGTGTGTGTTCCTCACT GCGGAAGCAGGATGGGAGCACGCATGTGTGTGTTCCTCACT < 41bp 0.702542961216417 0.498436179106994 0.3053975 0.41958344 prediction 0.405085922432835 Functional Loss - KIR2DL4 ENSG00000189013 CDS Human protein_coding chr19:55324746 chr19:55324750 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_96672 0 0 0 6 1 KIR2DL4 chr19:55324750 5'GT 55324750 Upstream 1bp
chr3 12856659 12856659 1 + C T PAAD 12856656 + 12856636 12856676 41 CCAGAGAGTGAAGACGAGTACAGCGATGACGATGACATGAG CCAGAGAGTGAAGACGAGTACAGTGATGACGATGACATGAG < 41bp 0.702536052389734 0.484741475523462 0.29091066 0.3182801 prediction 0.405072104779468 Functional Loss - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12856656 chr3:12856659 synonymous SNV . 0 24 hm5C_associated_SNPs_96674 0 0 0 0 1 CAND2 chr3:12856640 3'AG 12856640 Downstream 20bp
chr14 101195375 101195375 1 + C T READ 101195372 + 101195352 101195392 41 CCCGGGCAGTGCATTTGCACCGACGGCTGGGACGGGGAGCT CCCGGGCAGTGCATTTGCACCGATGGCTGGGACGGGGAGCT < 41bp 0.702535268940498 0.487369585871266 0.19193849 0.24638534 prediction 0.405070537880996 Functional Loss - DLK1 ENSG00000185559 CDS Human protein_coding chr14:101195372 chr14:101195375 synonymous SNV . 0 24 hm5C_associated_SNPs_96675 0 0 1 0 1 DLK1 chr14:101195403 5'GT 101195403 Upstream 29bp
chr19 49841245 49841245 1 + G T SKCM 49841241 + 49841221 49841261 41 CAAAAGTACGGCACCAACCCCGAGGAGACCGCGGCCGAGGA CAAAAGTACGGCACCAACCCCGAGTAGACCGCGGCCGAGGA < 41bp 0.720169812086629 0.517637539630869 0.8210776 0.41286948 prediction 0.405064544911518 Functional Loss - CD37 ENSG00000104894 CDS Human protein_coding chr19:49841241 chr19:49841245 stopgain 0.111 0 25 hm5C_associated_SNPs_96678 0 0 1 0 2 CD37 chr19:49841182 3'AG 49841182 Downstream 64bp
chr19 49841245 49841245 1 + G T SKCM 49841241 + 49841221 49841261 41 CAAAAGTACGGCACCAACCCCGAGGAGACCGCGGCCGAGGA CAAAAGTACGGCACCAACCCCGAGTAGACCGCGGCCGAGGA < 41bp 0.720169812086629 0.517637539630869 0.8210776 0.41286948 prediction 0.405064544911518 Functional Loss - CD37 ENSG00000104894 CDS Human protein_coding chr19:49841241 chr19:49841245 stopgain 0.111 0 25 hm5C_associated_SNPs_96678 0 0 1 0 2 CD37 chr19:49841286 5'GT 49841286 Upstream 42bp
chr1 11249979 11249979 1 + C T LGG 11249976 + 11249956 11249996 41 ACCAAATTGACATCATGCAGCTGCAGGCAGCACAGACGGTC ACCAAATTGACATCATGCAGCTGTAGGCAGCACAGACGGTC < 41bp 0.741613157127655 0.539081970231222 0.08450642 0.087860435 prediction 0.405062373792867 Functional Loss - ANGPTL7 ENSG00000171819 CDS Human protein_coding chr1:11249976 chr1:11249979 stopgain 0.994 1 24 hm5C_associated_SNPs_96679 0 0 0 0 1 ANGPTL7 chr1:11250012 5'GT 11250012 Upstream 34bp
chr10 45939260 45939260 1 + C T COAD 45939258 + 45939238 45939278 41 ACCGCCTCCGCCCAGCACGCCGCGGTCAACTTCGGCCAGGT ACCGCCTCCGCCCAGCACGCCGTGGTCAACTTCGGCCAGGT < 41bp 0.702530158497289 0.443049548482904 0.7691995 0.55318195 prediction 0.405060316994577 Functional Loss - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45939258 chr10:45939260 nonsynonymous SNV 0.895 5 23 hm5C_associated_SNPs_96680 0 0 0 0 2 ALOX5 chr10:45939176 3'AG 45939176 Downstream 85bp
chr10 45939260 45939260 1 + C T COAD 45939258 + 45939238 45939278 41 ACCGCCTCCGCCCAGCACGCCGCGGTCAACTTCGGCCAGGT ACCGCCTCCGCCCAGCACGCCGTGGTCAACTTCGGCCAGGT < 41bp 0.702530158497289 0.443049548482904 0.7691995 0.55318195 prediction 0.405060316994577 Functional Loss - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45939258 chr10:45939260 nonsynonymous SNV 0.895 5 23 hm5C_associated_SNPs_96680 0 0 0 0 2 ALOX5 chr10:45939276 5'GT 45939276 Upstream 17bp
chr18 47095827 47095827 1 + C T KIRC 47095825 + 47095805 47095845 41 AGGAGAAGGACGATTTTTCTCTCGGGAATGTCCACTTGATC AGGAGAAGGACGATTTTTCTCTTGGGAATGTCCACTTGATC < 41bp 0.873501247389947 0.670971426689092 0.102320045 0.32030782 prediction 0.40505964140171 Functional Loss - LIPG ENSG00000101670 CDS Human protein_coding chr18:47095825 chr18:47095827 synonymous SNV . 0 23 hm5C_associated_SNPs_96681 0 0 0 0 2 LIPG chr18:47095807 3'AG 47095807 Downstream 21bp
chr18 47095827 47095827 1 + C T KIRC 47095825 + 47095805 47095845 41 AGGAGAAGGACGATTTTTCTCTCGGGAATGTCCACTTGATC AGGAGAAGGACGATTTTTCTCTTGGGAATGTCCACTTGATC < 41bp 0.873501247389947 0.670971426689092 0.102320045 0.32030782 prediction 0.40505964140171 Functional Loss - LIPG ENSG00000101670 CDS Human protein_coding chr18:47095825 chr18:47095827 synonymous SNV . 0 23 hm5C_associated_SNPs_96681 0 0 0 0 2 LIPG chr18:47095918 5'GT 47095918 Upstream 92bp
chr17 16338251 16338251 1 + T C UCEC 16338250 + 16338230 16338270 41 GGGAGCAGACGCTGCCTACGCTGTGTGAGGACCCGTCAGGG GGGAGCAGACGCTGCCTACGCCGTGTGAGGACCCGTCAGGG < 41bp 0.702524220291655 0.455887820504785 0.3501624 0.6869952 prediction 0.40504844058331 Functional Loss - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16338250 chr17:16338251 nonsynonymous SNV 0.375 1 22 hm5C_associated_SNPs_96686 0 0 0 0 1 TRPV2 chr17:16338283 5'GT 16338283 Upstream 33bp
chr8 86358436 86358436 1 + G T STAD 86358433 + 86358413 86358453 41 TTCCCGGCATGCCGGGACTACTGGACCTACCAGGGCTCATT TTCCCGGCATGCCGGGACTACTGTACCTACCAGGGCTCATT < 41bp 0.938443254531075 0.73592129441532 0.8515787 0.108593315 prediction 0.405043920231511 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86358433 chr8:86358436 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_96687 0 0 0 0 2 CA3 chr8:86358371 3'AG 86358371 Downstream 66bp
chr8 86358436 86358436 1 + G T STAD 86358433 + 86358413 86358453 41 TTCCCGGCATGCCGGGACTACTGGACCTACCAGGGCTCATT TTCCCGGCATGCCGGGACTACTGTACCTACCAGGGCTCATT < 41bp 0.938443254531075 0.73592129441532 0.8515787 0.108593315 prediction 0.405043920231511 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86358433 chr8:86358436 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_96687 0 0 0 0 2 CA3 chr8:86358526 5'GT 86358526 Upstream 91bp
chr17 46628424 46628424 1 + G A LUSC 46628421 + 46628401 46628441 41 GCTCGTGTACGCCGTCCGCGCCCGCTTGGACGCCGCCGACC GCTCGTGTACGCCGTCCGCGCCCACTTGGACGCCGCCGACC < 41bp 0.702515908102348 0.452653541274664 0.59816015 0.22697687 prediction 0.405031816204695 Functional Loss - HOXB3 ENSG00000120093 CDS Human protein_coding chr17:46628421 chr17:46628424 nonsynonymous SNV 0.994 5 24 hm5C_associated_SNPs_96689 0 0 1 0 1 HOXB3 chr17:46628386 3'AG 46628386 Downstream 39bp
chr5 94756012 94756012 1 + C T COAD 94756010 + 94755990 94756030 41 TTTAGAAGACCAAATAAGAGCTCGAGATCAGGCGGCCACAG TTTAGAAGACCAAATAAGAGCTTGAGATCAGGCGGCCACAG < 41bp 0.790181319408969 0.587667397170331 0.37231472 0.39512324 prediction 0.405027844477276 Functional Loss - FAM81B ENSG00000153347 CDS Human protein_coding chr5:94756010 chr5:94756012 stopgain 0.942 1 23 hm5C_associated_SNPs_96690 0 0 0 0 2 FAM81B chr5:94755988 3'AG 94755988 Downstream 25bp
chr5 94756012 94756012 1 + C T COAD 94756010 + 94755990 94756030 41 TTTAGAAGACCAAATAAGAGCTCGAGATCAGGCGGCCACAG TTTAGAAGACCAAATAAGAGCTTGAGATCAGGCGGCCACAG < 41bp 0.790181319408969 0.587667397170331 0.37231472 0.39512324 prediction 0.405027844477276 Functional Loss - FAM81B ENSG00000153347 CDS Human protein_coding chr5:94756010 chr5:94756012 stopgain 0.942 1 23 hm5C_associated_SNPs_96690 0 0 0 0 2 FAM81B chr5:94756106 5'GT 94756106 Upstream 95bp
chr1 64100558 64100558 1 + G A UCEC 64100555 + 64100535 64100575 41 GAACTCGGTGCCCCTGCGAACTCGGCAGTTAACTGCGTTCC GAACTCGGTGCCCCTGCGAACTCAGCAGTTAACTGCGTTCC < 41bp 0.70251297198934 0.460862200427935 0.32960054 0.12501669 prediction 0.40502594397868 Functional Loss - PGM1 ENSG00000079739 CDS Human protein_coding chr1:64100555 chr1:64100558 synonymous SNV . 0 24 hm5C_associated_SNPs_96691 0 0 1 0 1 PGM1 chr1:64100500 3'AG 64100500 Downstream 59bp
chr19 11024678 11024678 1 + C T UCEC 11024675 + 11024655 11024695 41 CCCATGGGCTACATGCTCTTCAACGAGCGCATGCTGGAGAG CCCATGGGCTACATGCTCTTCAATGAGCGCATGCTGGAGAG < 41bp 0.708531714701864 0.506020756778351 0.20952544 0.31858665 prediction 0.405021915847025 Functional Loss - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11024675 chr19:11024678 synonymous SNV . 0 24 hm5C_associated_SNPs_96695 0 0 1 1 1 CARM1 chr19:11024730 5'GT 11024730 Upstream 53bp
chr9 136305577 136305577 1 + C T rs143573766 136305574 + 136305554 136305594 41 GTCGAGTACAGAGTGGCCCTCACCGAGGACCGGCTGCCCCG GTCGAGTACAGAGTGGCCCTCACTGAGGACCGGCTGCCCCG < 41bp 0.753729358190562 0.551218723790827 0.26037243 0.21151647 prediction 0.405021268799469 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136305574 chr9:136305577 synonymous SNV . 0 24 hm5C_associated_SNPs_96696 0 0 0 0 1 ADAMTS13 chr9:136305646 5'GT 136305646 Upstream 70bp
chr1 905963 905963 1 + G A UCEC 905960 + 905940 905980 41 CTGTACTTCCAGGCCCACGGCTCGGAAGGACTCACATTTCA CTGTACTTCCAGGCCCACGGCTCAGAAGGACTCACATTTCA < 41bp 0.702508755550565 0.451170315189825 0.16479096 0.18865016 prediction 0.40501751110113 Functional Loss - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:905960 chr1:905963 synonymous SNV . 0 24 hm5C_associated_SNPs_96697 0 0 0 0 2 PLEKHN1 chr1:905901 3'AG 905901 Downstream 63bp
chr1 905963 905963 1 + G A UCEC 905960 + 905940 905980 41 CTGTACTTCCAGGCCCACGGCTCGGAAGGACTCACATTTCA CTGTACTTCCAGGCCCACGGCTCAGAAGGACTCACATTTCA < 41bp 0.702508755550565 0.451170315189825 0.16479096 0.18865016 prediction 0.40501751110113 Functional Loss - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:905960 chr1:905963 synonymous SNV . 0 24 hm5C_associated_SNPs_96697 0 0 0 0 2 PLEKHN1 chr1:905981 5'GT 905981 Upstream 19bp
chr1 74663969 74663969 1 + G T SKCM 74663967 + 74663947 74663987 41 CAGGGAAGGTGGGGCTATGGCAGCTGCTAGGGACCCTCCGG CAGGGAAGGTGGGGCTATGGCATCTGCTAGGGACCCTCCGG < 41bp 0.921616337147681 0.719107702978526 0.8937148 0.51817197 prediction 0.405017268338312 Functional Loss - FPGT;FPGT-TNNI3K ENSG00000116783;ENSG00000254685;ENSG00000259030 CDS Human other chr1:74663967 chr1:74663969 nonsynonymous SNV 0.225 0 23 hm5C_associated_SNPs_96698 0 0 1 0 1 FPGT;FPGT-TNNI3K chr1:74664044 5'GT 74664044 Upstream 76bp
chr6 13182865 13182865 1 + G T COAD 13182863 + 13182843 13182883 41 ATGGAGCCAGTCCCAATGCCCAGGGATCCCTGCTCATATGA ATGGAGCCAGTCCCAATGCCCATGGATCCCTGCTCATATGA < 41bp 0.702508174668662 0.369737824709754 0.93507123 0.24097207 prediction 0.405016349337324 Functional Loss - PHACTR1 ENSG00000112137 CDS Human protein_coding chr6:13182863 chr6:13182865 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_96699 0 0 0 0 1 PHACTR1 chr6:13182918 5'GT 13182918 Upstream 54bp
chr22 45914568 45914568 1 + C T UCEC 45914566 + 45914546 45914586 41 TCTCTTCCCTGCACAGTGGACGCGGATGTCCTCCTGGAGGC TCTCTTCCCTGCACAGTGGACGTGGATGTCCTCCTGGAGGC < 41bp 0.848048135527022 0.645540176863084 0.8705594 0.7546954 prediction 0.405015917327877 Functional Loss - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45914566 chr22:45914568 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_96700 0 0 1 0 2 FBLN1 chr22:45914562 3'AG 45914562 Downstream 7bp
chr22 45914568 45914568 1 + C T UCEC 45914566 + 45914546 45914586 41 TCTCTTCCCTGCACAGTGGACGCGGATGTCCTCCTGGAGGC TCTCTTCCCTGCACAGTGGACGTGGATGTCCTCCTGGAGGC < 41bp 0.848048135527022 0.645540176863084 0.8705594 0.7546954 prediction 0.405015917327877 Functional Loss - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45914566 chr22:45914568 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_96700 0 0 1 0 2 FBLN1 chr22:45914667 5'GT 45914667 Upstream 100bp
chr22 29695258 29695258 1 + G T OV 29695256 + 29695236 29695276 41 CCAGAACTTCGCCTGGAGAACAGAGTGCAACCAGTGTAAGG CCAGAACTTCGCCTGGAGAACATAGTGCAACCAGTGTAAGG < 41bp 0.702507059897168 0.343508217367863 0.1852392 0.059940934 prediction 0.405014119794337 Functional Loss - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695256 chr22:29695258 stopgain 1.000 0 23 hm5C_associated_SNPs_96701 0 0 1 0 2 EWSR1 chr22:29695224 3'AG 29695224 Downstream 35bp
chr22 29695258 29695258 1 + G T OV 29695256 + 29695236 29695276 41 CCAGAACTTCGCCTGGAGAACAGAGTGCAACCAGTGTAAGG CCAGAACTTCGCCTGGAGAACATAGTGCAACCAGTGTAAGG < 41bp 0.702507059897168 0.343508217367863 0.1852392 0.059940934 prediction 0.405014119794337 Functional Loss - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695256 chr22:29695258 stopgain 1.000 0 23 hm5C_associated_SNPs_96701 0 0 1 0 2 EWSR1 chr22:29695321 5'GT 29695321 Upstream 64bp
chr15 45426460 45426460 1 + C T COAD 45426457 + 45426437 45426477 41 CAACACCATCTCAAGGGGCCCTGCAGGGCTGGCCTCCCTGA CAACACCATCTCAAGGGGCCCTGTAGGGCTGGCCTCCCTGA < 41bp 0.702506183302883 0.481822351215429 0.24665317 0.068942636 prediction 0.405012366605765 Functional Loss - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45426457 chr15:45426460 nonsynonymous SNV 0.974 2 24 hm5C_associated_SNPs_96702 0 0 0 0 1 DUOX1 chr15:45426507 5'GT 45426507 Upstream 48bp
chr8 87414266 87414266 1 + G A UCEC 87414263 + 87414243 87414283 41 TCAAGGTTGGCTGTTGAAGGCACGAATGGAATAGATAATCA TCAAGGTTGGCTGTTGAAGGCACAAATGGAATAGATAATCA < 41bp 0.702504224827364 0.48232521523164 0.09300092 0.06494737 prediction 0.405008449654729 Functional Loss - WWP1 ENSG00000123124 CDS Human protein_coding chr8:87414263 chr8:87414266 synonymous SNV . 0 24 hm5C_associated_SNPs_96705 0 0 1 0 1 WWP1 chr8:87414248 3'AG 87414248 Downstream 19bp
chr19 10742309 10742309 1 + G A SKCM 10742306 + 10742286 10742326 41 CCTCTGCTCCATGCAGTGGCCCGGAGATGCTTCCCCGCTAT CCTCTGCTCCATGCAGTGGCCCGAAGATGCTTCCCCGCTAT < 41bp 0.826495378259633 0.623993102065546 0.8946955 0.22148544 prediction 0.405004552388175 Functional Loss - SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10742306 chr19:10742309 synonymous SNV . 0 24 hm5C_associated_SNPs_96708 0 0 1 0 1 SLC44A2 chr19:10742302 3'AG 10742302 Downstream 8bp
chrX 35820307 35820307 1 + G C LUAD 35820303 + 35820283 35820323 41 CTCCTGCCTACTGCCACCCACAAGGGTCATCATGTCTCAGG CTCCTGCCTACTGCCACCCACAAGCGTCATCATGTCTCAGG < 41bp 0.742070999461326 0.539570895920003 0.28156066 0.12573412 prediction 0.405000207082647 Functional Loss - MAGEB16 ENSG00000189023 CDS Human protein_coding chrX:35820303 chrX:35820307 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_96709 0 0 0 0 1 MAGEB16 chrX:35820248 3'AG 35820248 Downstream 60bp
chr17 66364775 66364775 1 + G A UCEC 66364772 + 66364752 66364792 41 GACTCAGCTACCAGCAGCGCCACGGGGCAGAAGCCTGTATG GACTCAGCTACCAGCAGCGCCACAGGGCAGAAGCCTGTATG < 41bp 0.702497969813972 0.445185737987423 0.7006173 0.33802694 prediction 0.404995939627944 Functional Loss - ARSG ENSG00000141337 CDS Human protein_coding chr17:66364772 chr17:66364775 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_96712 0 0 0 0 1 ARSG chr17:66364689 3'AG 66364689 Downstream 87bp
chr11 10503755 10503755 1 + C T SKCM 10503752 + 10503732 10503772 41 TCCGCGGGCGGATACTGCACCTCCGGAAGAGGGCCTTCCAG TCCGCGGGCGGATACTGCACCTCTGGAAGAGGGCCTTCCAG < 41bp 0.768917992735988 0.566422265682113 0.8652913 0.40464586 prediction 0.40499145410775 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10503752 chr11:10503755 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_96714 0 0 0 0 1 AMPD3 chr11:10503772 5'GT 10503772 Upstream 18bp
chr2 203149168 203149168 1 + G A COAD 203149165 + 203149145 203149185 41 ATTAATCCCTGGGGTAGAACCACGTGAAATGGCAGCTATGT ATTAATCCCTGGGGTAGAACCACATGAAATGGCAGCTATGT < 41bp 0.799420400431723 0.596926581904563 0.89386296 0.37881026 prediction 0.404987637054321 Functional Loss - NOP58 ENSG00000055044 CDS Human protein_coding chr2:203149165 chr2:203149168 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_96716 0 0 1 0 1 NOP58 chr2:203149204 5'GT 203149204 Upstream 37bp
chr19 54627968 54627968 1 + C T SKCM 54627966 + 54627946 54627986 41 CGCAAGACGCTGTCGGGCTTCTCGTCTACCTCAGTGCTGCC CGCAAGACGCTGTCGGGCTTCTTGTCTACCTCAGTGCTGCC < 41bp 0.702491455565532 0.408408452153114 0.20016545 0.05751607 prediction 0.404982911131064 Functional Loss - PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54627966 chr19:54627968 nonsynonymous SNV 0.150 4 23 hm5C_associated_SNPs_96718 0 0 1 0 2 PRPF31 chr19:54627878 3'AG 54627878 Downstream 91bp
chr19 54627968 54627968 1 + C T SKCM 54627966 + 54627946 54627986 41 CGCAAGACGCTGTCGGGCTTCTCGTCTACCTCAGTGCTGCC CGCAAGACGCTGTCGGGCTTCTTGTCTACCTCAGTGCTGCC < 41bp 0.702491455565532 0.408408452153114 0.20016545 0.05751607 prediction 0.404982911131064 Functional Loss - PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54627966 chr19:54627968 nonsynonymous SNV 0.150 4 23 hm5C_associated_SNPs_96718 0 0 1 0 2 PRPF31 chr19:54628035 5'GT 54628035 Upstream 68bp
chr7 2565078 2565078 1 + C T rs147266260 2565075 + 2565055 2565095 41 TGCCACGTGGACGATGACAACTACGTCAACCTGCGGGCCCT TGCCACGTGGACGATGACAACTATGTCAACCTGCGGGCCCT < 41bp 0.748340028941643 0.545849582217241 0.5584822 0.70187914 prediction 0.404980893448803 Functional Loss - LFNG ENSG00000106003 CDS Human protein_coding chr7:2565075 chr7:2565078 synonymous SNV . 0 24 hm5C_associated_SNPs_96719 1 0 0 0 1 LFNG chr7:2565048 3'AG 2565048 Downstream 31bp
chr19 740362 740362 1 + G A COAD 740359 + 740339 740379 41 ACTCTCGTGCCAGCCATGTACTCGGTTGAGATCACTGTGGA ACTCTCGTGCCAGCCATGTACTCAGTTGAGATCACTGTGGA < 41bp 0.806838397648663 0.604353421380242 0.54831845 0.41812307 prediction 0.404969952536841 Functional Loss - PALM ENSG00000099864 CDS Human protein_coding chr19:740359 chr19:740362 synonymous SNV . 0 24 hm5C_associated_SNPs_96722 0 0 1 0 1 PALM chr19:740352 3'AG 740352 Downstream 11bp
chr2 29225431 29225431 1 + G A SKCM 29225428 + 29225408 29225448 41 TGGATCCAGGGGGAGGCCCCCAAGGAGTTCCCCTGCACAGC TGGATCCAGGGGGAGGCCCCCAAAGAGTTCCCCTGCACAGC < 41bp 0.702480037573727 0.439148150757621 0.3130635 0.08473039 prediction 0.404960075147453 Functional Loss - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29225428 chr2:29225431 nonsynonymous SNV 0.141 3 24 hm5C_associated_SNPs_96726 0 0 0 0 1 TOGARAM2 chr2:29225402 3'AG 29225402 Downstream 30bp
chr1 152770271 152770271 1 + A T STAD 152770267 + 152770247 152770287 41 AGCTCCTGAACACCCACCACCGAGATGTCCTGCCAGCAGAG AGCTCCTGAACACCCACCACCGAGTTGTCCTGCCAGCAGAG < 41bp 0.720858681837148 0.518378753037605 0.6673043 0.22282603 prediction 0.404959857599087 Functional Loss - LCE1D ENSG00000172155 CDS Human protein_coding chr1:152770267 chr1:152770271 nonsynonymous SNV 0.666 1 25 hm5C_associated_SNPs_96727 0 0 0 0 1 LCE1D chr1:152770249 3'AG 152770249 Downstream 23bp
chr16 31309098 31309098 1 + C T GBM 31309095 + 31309075 31309115 41 TGGCAGTGTGATGCTGTTCTCTACGGGGAGCAGGGCCAACC TGGCAGTGTGATGCTGTTCTCTATGGGGAGCAGGGCCAACC < 41bp 0.762742559652829 0.560263372291837 0.5919939 0.339024 prediction 0.404958374721985 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31309095 chr16:31309098 synonymous SNV . 0 24 hm5C_associated_SNPs_96728 0 0 0 0 2 ITGAM chr16:31309063 3'AG 31309063 Downstream 36bp
chr16 31309098 31309098 1 + C T GBM 31309095 + 31309075 31309115 41 TGGCAGTGTGATGCTGTTCTCTACGGGGAGCAGGGCCAACC TGGCAGTGTGATGCTGTTCTCTATGGGGAGCAGGGCCAACC < 41bp 0.762742559652829 0.560263372291837 0.5919939 0.339024 prediction 0.404958374721985 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31309095 chr16:31309098 synonymous SNV . 0 24 hm5C_associated_SNPs_96728 0 0 0 0 2 ITGAM chr16:31309066 3'AG 31309066 Downstream 33bp
chr14 61952305 61952305 1 + G A HNSC 61952302 + 61952282 61952322 41 GTCTCGTCGTTTTGATGAAGCACGAGCTCGCTTCTATGCTG GTCTCGTCGTTTTGATGAAGCACAAGCTCGCTTCTATGCTG < 41bp 0.828511266990499 0.626036008660927 0.16103935 0.033514977 prediction 0.404950516659144 Functional Loss - PRKCH ENSG00000027075 CDS Human protein_coding chr14:61952302 chr14:61952305 nonsynonymous SNV 0.986 3 24 hm5C_associated_SNPs_96734 0 0 0 0 2 PRKCH chr14:61952220 3'AG 61952220 Downstream 86bp
chr14 61952305 61952305 1 + G A HNSC 61952302 + 61952282 61952322 41 GTCTCGTCGTTTTGATGAAGCACGAGCTCGCTTCTATGCTG GTCTCGTCGTTTTGATGAAGCACAAGCTCGCTTCTATGCTG < 41bp 0.828511266990499 0.626036008660927 0.16103935 0.033514977 prediction 0.404950516659144 Functional Loss - PRKCH ENSG00000027075 CDS Human protein_coding chr14:61952302 chr14:61952305 nonsynonymous SNV 0.986 3 24 hm5C_associated_SNPs_96734 0 0 0 0 2 PRKCH chr14:61952374 5'GT 61952374 Upstream 70bp
chr12 6618926 6618926 1 + G T LUSC 6618924 + 6618904 6618944 41 CTCAGGGGCCCCTGGCTATGCTGCAGCACTTTGATACTATC CTCAGGGGCCCCTGGCTATGCTTCAGCACTTTGATACTATC < 41bp 0.702472028197436 0.355033377645012 0.08964571 0.034760892 prediction 0.404944056394873 Functional Loss - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6618924 chr12:6618926 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_96736 0 0 1 0 2 NCAPD2 chr12:6618883 3'AG 6618883 Downstream 44bp
chr12 6618926 6618926 1 + G T LUSC 6618924 + 6618904 6618944 41 CTCAGGGGCCCCTGGCTATGCTGCAGCACTTTGATACTATC CTCAGGGGCCCCTGGCTATGCTTCAGCACTTTGATACTATC < 41bp 0.702472028197436 0.355033377645012 0.08964571 0.034760892 prediction 0.404944056394873 Functional Loss - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6618924 chr12:6618926 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_96736 0 0 1 0 2 NCAPD2 chr12:6618958 5'GT 6618958 Upstream 33bp
chr16 312481 312481 1 + C T CESC 312478 + 312458 312498 41 TACGAGAAGGTGACCGGGAGCGGCGGCCCGTTCAAGAGTGA TACGAGAAGGTGACCGGGAGCGGTGGCCCGTTCAAGAGTGA < 41bp 0.729460255312782 0.526990178675615 0.86459494 0.8250224 prediction 0.404940153274335 Functional Loss - FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:312478 chr16:312481 synonymous SNV . 0 24 hm5C_associated_SNPs_96737 0 0 0 0 2 FAM234A chr16:312423 3'AG 312423 Downstream 59bp
chr16 312481 312481 1 + C T CESC 312478 + 312458 312498 41 TACGAGAAGGTGACCGGGAGCGGCGGCCCGTTCAAGAGTGA TACGAGAAGGTGACCGGGAGCGGTGGCCCGTTCAAGAGTGA < 41bp 0.729460255312782 0.526990178675615 0.86459494 0.8250224 prediction 0.404940153274335 Functional Loss - FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:312478 chr16:312481 synonymous SNV . 0 24 hm5C_associated_SNPs_96737 0 0 0 0 2 FAM234A chr16:312552 5'GT 312552 Upstream 72bp
chr4 110880502 110880502 1 + C T SARC 110880499 + 110880479 110880519 41 TGCAAATTGAGGAAAGGAAACTGCAGCAGCACTGTGTGTGG TGCAAATTGAGGAAAGGAAACTGTAGCAGCACTGTGTGTGG < 41bp 0.702467268758236 0.475869739815335 0.091612786 0.023273706 prediction 0.404934537516471 Functional Loss - EGF ENSG00000138798 CDS Human protein_coding chr4:110880499 chr4:110880502 synonymous SNV . 0 24 hm5C_associated_SNPs_96739 0 0 0 0 2 EGF chr4:110880468 3'AG 110880468 Downstream 35bp
chr4 110880502 110880502 1 + C T SARC 110880499 + 110880479 110880519 41 TGCAAATTGAGGAAAGGAAACTGCAGCAGCACTGTGTGTGG TGCAAATTGAGGAAAGGAAACTGTAGCAGCACTGTGTGTGG < 41bp 0.702467268758236 0.475869739815335 0.091612786 0.023273706 prediction 0.404934537516471 Functional Loss - EGF ENSG00000138798 CDS Human protein_coding chr4:110880499 chr4:110880502 synonymous SNV . 0 24 hm5C_associated_SNPs_96739 0 0 0 0 2 EGF chr4:110880593 5'GT 110880593 Upstream 92bp
chr16 15818575 15818575 1 - G A STAD 15818578 - 15818558 15818598 41 TGGAGGAGGAGCGGAACAGCCTGCAAGACCAGCTGGACGAG TGGAGGAGGAGCGGAACAGCCTGTAAGACCAGCTGGACGAG < 41bp 0.777040918540515 0.574574846549251 0.8049409 0.8380663 prediction 0.404932143982528 Functional Loss - MYH11 ENSG00000133392 CDS Human protein_coding chr16:15818578 chr16:15818575 stopgain 1.000 0 24 hm5C_associated_SNPs_96741 0 0 0 0 2 MYH11 chr16:15818504 5'GT 15818504 Upstream 72bp
chr16 15818575 15818575 1 - G A STAD 15818578 - 15818558 15818598 41 TGGAGGAGGAGCGGAACAGCCTGCAAGACCAGCTGGACGAG TGGAGGAGGAGCGGAACAGCCTGTAAGACCAGCTGGACGAG < 41bp 0.777040918540515 0.574574846549251 0.8049409 0.8380663 prediction 0.404932143982528 Functional Loss - MYH11 ENSG00000133392 CDS Human protein_coding chr16:15818578 chr16:15818575 stopgain 1.000 0 24 hm5C_associated_SNPs_96741 0 0 0 0 2 MYH11 chr16:15818656 3'AG 15818656 Downstream 82bp
chr19 33623282 33623282 1 + G T rs566175077 33623278 + 33623258 33623298 41 GGCCTTGGACAGGGAACCACCACCGCATCTGTTGCCTGAGA GGCCTTGGACAGGGAACCACCACCTCATCTGTTGCCTGAGA < 41bp 0.702464411167474 0.497787740344803 0.6070117 0.45790237 prediction 0.404928822334949 Functional Loss - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33623278 chr19:33623282 synonymous SNV . 0 25 hm5C_associated_SNPs_96743 0 0 0 0 1 WDR88 chr19:33623351 5'GT 33623351 Upstream 70bp
chr3 161220139 161220139 1 + G T LUAD 161220136 + 161220116 161220156 41 ACCAAGGAGTTCCAGGATACCCAGGAAAACCGGGAGCACAA ACCAAGGAGTTCCAGGATACCCATGAAAACCGGGAGCACAA < 41bp 0.702464302530233 0.304410186926262 0.87978625 0.29363823 prediction 0.404928605060466 Functional Loss - OTOL1 ENSG00000182447 CDS Human protein_coding chr3:161220136 chr3:161220139 stopgain 1.000 1 24 hm5C_associated_SNPs_96744 0 0 0 0 2 OTOL1 chr3:161220095 3'AG 161220095 Downstream 45bp
chr3 161220139 161220139 1 + G T LUAD 161220136 + 161220116 161220156 41 ACCAAGGAGTTCCAGGATACCCAGGAAAACCGGGAGCACAA ACCAAGGAGTTCCAGGATACCCATGAAAACCGGGAGCACAA < 41bp 0.702464302530233 0.304410186926262 0.87978625 0.29363823 prediction 0.404928605060466 Functional Loss - OTOL1 ENSG00000182447 CDS Human protein_coding chr3:161220136 chr3:161220139 stopgain 1.000 1 24 hm5C_associated_SNPs_96744 0 0 0 0 2 OTOL1 chr3:161220157 5'GT 161220157 Upstream 19bp
chr17 45331221 45331221 1 + G C rs117052258 45331220 + 45331200 45331240 41 GGGCGGAGCGCCGCGGGAGGCGGACGAGATGCGAGCGCGGC GGGCGGAGCGCCGCGGGAGGCCGACGAGATGCGAGCGCGGC < 41bp 0.823777325135789 0.621314335409026 0.9029921 0.7870724 prediction 0.404925979453525 Functional Loss - ITGB3 ENSG00000259207 UTR5 Human other chr17:45331220 chr17:45331221 . . 0 22 hm5C_associated_SNPs_96745 2 0 0 0 1 ITGB3 chr17:45331306 5'GT 45331306 Upstream 86bp
chr7 143013439 143013439 1 + G T COAD 143013435 + 143013415 143013455 41 CTGAGAATGGGGGCCTCCAGCACAGGCTCCGGAAGGATGCA CTGAGAATGGGGGCCTCCAGCACATGCTCCGGAAGGATGCA < 41bp 0.702462002327149 0.494478777554787 0.91605365 0.49948785 prediction 0.404924004654298 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143013435 chr7:143013439 nonsynonymous SNV 0.779 3 25 hm5C_associated_SNPs_96746 0 0 0 0 1 CLCN1 chr7:143013485 5'GT 143013485 Upstream 47bp
chr20 42885867 42885867 1 + G A UCEC 42885864 + 42885844 42885884 41 AGCCTGCCACAGAGCGAGCACAAGGAGCCCTGGTTCATGCG AGCCTGCCACAGAGCGAGCACAAAGAGCCCTGGTTCATGCG < 41bp 0.702459285899831 0.450668217648492 0.86957335 0.37709275 prediction 0.404918571799662 Functional Loss - GDAP1L1 ENSG00000124194 CDS Human protein_coding chr20:42885864 chr20:42885867 synonymous SNV . 0 24 hm5C_associated_SNPs_96747 0 0 0 0 1 GDAP1L1 chr20:42885793 3'AG 42885793 Downstream 75bp
chr20 3028472 3028472 1 + C T UCEC 3028470 + 3028450 3028490 41 AAGAACTACAACTGGGCCATCACCAGAGAGGGGCTGGTGGT AAGAACTACAACTGGGCCATCATCAGAGAGGGGCTGGTGGT < 41bp 0.856772752653692 0.654314761432836 0.5174966 0.4255442 prediction 0.404915982441712 Functional Loss - MRPS26 ENSG00000125901 CDS Human protein_coding chr20:3028470 chr20:3028472 nonsynonymous SNV 0.992 3 23 hm5C_associated_SNPs_96749 0 0 1 0 1 MRPS26 chr20:3028381 3'AG 3028381 Downstream 92bp
chr19 5915022 5915022 1 + C T UCEC 5915019 + 5914999 5915039 41 AAGCTGGACCGCAGTGGGGACGGCGTCGTGACGGTGGACGA AAGCTGGACCGCAGTGGGGACGGTGTCGTGACGGTGGACGA < 41bp 0.742578922829243 0.540127838610331 0.39231318 0.3631177 prediction 0.404902168437823 Functional Loss - CAPS ENSG00000105519 CDS Human protein_coding chr19:5915019 chr19:5915022 synonymous SNV . 0 24 hm5C_associated_SNPs_96753 0 0 0 0 2 CAPS chr19:5914951 3'AG 5914951 Downstream 72bp
chr19 5915022 5915022 1 + C T UCEC 5915019 + 5914999 5915039 41 AAGCTGGACCGCAGTGGGGACGGCGTCGTGACGGTGGACGA AAGCTGGACCGCAGTGGGGACGGTGTCGTGACGGTGGACGA < 41bp 0.742578922829243 0.540127838610331 0.39231318 0.3631177 prediction 0.404902168437823 Functional Loss - CAPS ENSG00000105519 CDS Human protein_coding chr19:5915019 chr19:5915022 synonymous SNV . 0 24 hm5C_associated_SNPs_96753 0 0 0 0 2 CAPS chr19:5915076 5'GT 5915076 Upstream 55bp
chr2 26950590 26950590 1 + C T UCEC 26950587 + 26950567 26950607 41 GGCAAGGTGTTCTGCATGTTCTACGCGCTGCTGGGCATCCC GGCAAGGTGTTCTGCATGTTCTATGCGCTGCTGGGCATCCC < 41bp 0.704121218926722 0.501670910009164 0.16323572 0.1896613 prediction 0.404900617835116 Functional Loss - KCNK3 ENSG00000171303 CDS Human protein_coding chr2:26950587 chr2:26950590 synonymous SNV . 0 24 hm5C_associated_SNPs_96754 0 0 1 0 1 KCNK3 chr2:26950535 3'AG 26950535 Downstream 56bp
chr2 47222329 47222329 1 + C T LUSC 47222326 + 47222306 47222346 41 GCCCTCCTGCTCCTCCTCATCAGCGAATCCATGGTAAGCTC GCCCTCCTGCTCCTCCTCATCAGTGAATCCATGGTAAGCTC < 41bp 0.742956226472698 0.54050610983628 0.79932 0.4203151 prediction 0.404900233272836 Functional Loss - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47222326 chr2:47222329 synonymous SNV . 0 24 hm5C_associated_SNPs_96755 0 0 1 0 2 TTC7A chr2:47222275 3'AG 47222275 Downstream 55bp
chr2 47222329 47222329 1 + C T LUSC 47222326 + 47222306 47222346 41 GCCCTCCTGCTCCTCCTCATCAGCGAATCCATGGTAAGCTC GCCCTCCTGCTCCTCCTCATCAGTGAATCCATGGTAAGCTC < 41bp 0.742956226472698 0.54050610983628 0.79932 0.4203151 prediction 0.404900233272836 Functional Loss - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47222326 chr2:47222329 synonymous SNV . 0 24 hm5C_associated_SNPs_96755 0 0 1 0 2 TTC7A chr2:47222338 5'GT 47222338 Upstream 10bp
chr14 77857410 77857410 1 + C T rs551937879 77857407 + 77857387 77857427 41 GAAGAGCCATTATTCAAACGCTCCATCAGCCTTCCCTATAG GAAGAGCCATTATTCAAACGCTCTATCAGCCTTCCCTATAG < 41bp 0.781405951724828 0.5789645098526 0.813766 0.50700223 prediction 0.404882883744455 Functional Loss - SAMD15 ENSG00000100583 CDS Human protein_coding chr14:77857407 chr14:77857410 synonymous SNV . 0 24 hm5C_associated_SNPs_96762 0 0 0 0 1 SAMD15 chr14:77857351 3'AG 77857351 Downstream 60bp
chr22 45255580 45255580 1 + G A rs7510897 45255577 + 45255557 45255597 41 CAGCGCTGCCCCTGGCCCCTCTGGAGCTCAGCAGGGAGCCC CAGCGCTGCCCCTGGCCCCTCTGAAGCTCAGCAGGGAGCCC < 41bp 0.829937153408994 0.627495997931681 0.2711426 0.35022837 prediction 0.404882310954626 Functional Loss - ARHGAP8;PRR5-ARHGAP8 ENSG00000248405 CDS Human protein_coding chr22:45255577 chr22:45255580 unknown 0.002 0 24 hm5C_associated_SNPs_96763 0 0 0 0 1 ARHGAP8;PRR5-ARHGAP8 chr22:45255560 3'AG 45255560 Downstream 21bp
chr14 62536500 62536500 1 + G A BRCA 62536497 + 62536477 62536517 41 TCAGCCGTTCGTTGTTGACACACGGAGAAGATGGCACAGAA TCAGCCGTTCGTTGTTGACACACAGAGAAGATGGCACAGAA < 41bp 0.822554888788003 0.620116174941529 0.48061037 0.20417657 prediction 0.404877427692949 Functional Loss - SYT16 ENSG00000139973 CDS Human protein_coding chr14:62536497 chr14:62536500 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_96764 0 0 0 0 1 SYT16 chr14:62536533 5'GT 62536533 Upstream 34bp
chr21 38580815 38580815 1 + G T rs2835669 38580812 + 38580792 38580832 41 TCTCCACCTTCGCTTCTACCCGGGGGCTCCAGTGCATCTGG TCTCCACCTTCGCTTCTACCCGGTGGCTCCAGTGCATCTGG < 41bp 0.925386626730869 0.722950691240724 0.9533859 0.91466874 prediction 0.404871870980289 Functional Loss - DSCR9 ENSG00000230366 ncRNA_exonic Human lincRNA chr21:38580812 chr21:38580815 . . 0 24 hm5C_associated_SNPs_96768 0 0 0 0 1 DSCR9 chr21:38580845 5'GT 38580845 Upstream 31bp
chr17 1945113 1945113 1 + A T LUSC 1945109 + 1945089 1945129 41 TCGGCCGTGGCTTGCGAGGACTGCAGCTGCAGGGACGAGAA TCGGCCGTGGCTTGCGAGGACTGCTGCTGCAGGGACGAGAA < 41bp 0.810640103814022 0.608204190333286 0.50378436 0.37210616 prediction 0.404871826961473 Functional Loss - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1945109 chr17:1945113 nonsynonymous SNV 0.123 1 25 hm5C_associated_SNPs_96769 0 0 1 0 2 DPH1 chr17:1945062 3'AG 1945062 Downstream 52bp
chr17 1945113 1945113 1 + A T LUSC 1945109 + 1945089 1945129 41 TCGGCCGTGGCTTGCGAGGACTGCAGCTGCAGGGACGAGAA TCGGCCGTGGCTTGCGAGGACTGCTGCTGCAGGGACGAGAA < 41bp 0.810640103814022 0.608204190333286 0.50378436 0.37210616 prediction 0.404871826961473 Functional Loss - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1945109 chr17:1945113 nonsynonymous SNV 0.123 1 25 hm5C_associated_SNPs_96769 0 0 1 0 2 DPH1 chr17:1945169 5'GT 1945169 Upstream 57bp
chr16 66424338 66424338 1 + C T CHOL 66424336 + 66424316 66424356 41 ATTTGTCGTGCCTGAAGACACCCGTGTGGGCACCTCTGTGG ATTTGTCGTGCCTGAAGACACCTGTGTGGGCACCTCTGTGG < 41bp 0.702435483611738 0.425050237432929 0.3370981 0.33360237 prediction 0.404870967223476 Functional Loss - CDH5 ENSG00000179776 CDS Human protein_coding chr16:66424336 chr16:66424338 nonsynonymous SNV 0.649 3 23 hm5C_associated_SNPs_96770 0 0 0 0 1 CDH5 chr16:66424306 3'AG 66424306 Downstream 33bp
chr13 96443194 96443194 1 + C T PRAD 96443191 + 96443171 96443211 41 GAGAGCCAGCAAGGAGGCGGCGGCAACCCTTTCCACAGAAG GAGAGCCAGCAAGGAGGCGGCGGTAACCCTTTCCACAGAAG < 41bp 0.724809521040568 0.522375605456678 0.61851937 0.43176782 prediction 0.404867831167779 Functional Loss - DNAJC3 ENSG00000102580 CDS Human protein_coding chr13:96443191 chr13:96443194 synonymous SNV . 0 24 hm5C_associated_SNPs_96772 0 0 1 0 1 DNAJC3 chr13:96443127 3'AG 96443127 Downstream 68bp
chr17 38244572 38244572 1 + C T BLCA 38244569 + 38244549 38244589 41 TCCCTGCGGGCGGCTGTCCGCTACGACCCTGAGAGCGACAC TCCCTGCGGGCGGCTGTCCGCTATGACCCTGAGAGCGACAC < 41bp 0.702430660560951 0.488032881255724 0.035633624 0.037403345 prediction 0.404861321121902 Functional Loss - THRA ENSG00000126351 CDS Human protein_coding chr17:38244569 chr17:38244572 synonymous SNV . 0 24 hm5C_associated_SNPs_96776 0 0 0 0 1 THRA chr17:38244495 3'AG 38244495 Downstream 78bp
chr2 79253280 79253280 1 + C T COAD 79253277 + 79253257 79253297 41 TGCTGCTTTCCTGCCTCATTCTCCTGTGTCAGGTTCAAGGT TGCTGCTTTCCTGCCTCATTCTCTTGTGTCAGGTTCAAGGT < 41bp 0.70241760056517 0.485718726848847 0.056830406 0.0909577 prediction 0.40483520113034 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79253277 chr2:79253280 synonymous SNV . 0 24 hm5C_associated_SNPs_96783 0 0 0 0 2 REG3G chr2:79253209 3'AG 79253209 Downstream 72bp
chr2 79253280 79253280 1 + C T COAD 79253277 + 79253257 79253297 41 TGCTGCTTTCCTGCCTCATTCTCCTGTGTCAGGTTCAAGGT TGCTGCTTTCCTGCCTCATTCTCTTGTGTCAGGTTCAAGGT < 41bp 0.70241760056517 0.485718726848847 0.056830406 0.0909577 prediction 0.40483520113034 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79253277 chr2:79253280 synonymous SNV . 0 24 hm5C_associated_SNPs_96783 0 0 0 0 2 REG3G chr2:79253295 5'GT 79253295 Upstream 16bp
chr2 33172827 33172827 1 + G A rs147166401 33172824 + 33172804 33172844 41 TTGTGCGCTCCAAGGTGCCGCAGGAGACCCAGAGCGGCGGA TTGTGCGCTCCAAGGTGCCGCAGAAGACCCAGAGCGGCGGA < 41bp 0.80541749510317 0.603009333772549 0.8184165 0.36002803 prediction 0.404816322661243 Functional Loss - LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33172824 chr2:33172827 nonsynonymous SNV 0.622 0 24 hm5C_associated_SNPs_96792 0 0 0 0 1 LTBP1 chr2:33172885 5'GT 33172885 Upstream 59bp
chr17 7467091 7467091 1 + C T SKCM 7467088 + 7467068 7467108 41 ACTCAGGTGGACTCCAAAGTCTCCTCTGGACCCTGACTCGG ACTCAGGTGGACTCCAAAGTCTCTTCTGGACCCTGACTCGG < 41bp 0.719441427631842 0.517033701664833 0.15659165 0.21717197 prediction 0.404815451934017 Functional Loss - SENP3 ENSG00000161956 CDS Human protein_coding chr17:7467088 chr17:7467091 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_96793 0 0 1 0 1 SENP3 chr17:7467108 5'GT 7467108 Upstream 18bp
chr9 71687547 71687547 1 + T C UCEC 71687546 + 71687526 71687566 41 AGTGGACCTAAGCGTTATGACTGGACTGGGAAAAACTGGGT AGTGGACCTAAGCGTTATGACCGGACTGGGAAAAACTGGGT < 41bp 0.813057444090268 0.610650629604354 0.095193595 0.11891127 prediction 0.404813628971828 Functional Loss - FXN ENSG00000165060 CDS Human protein_coding chr9:71687546 chr9:71687547 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_96794 0 0 1 0 1 FXN chr9:71687528 3'AG 71687528 Downstream 20bp
chr1 78392474 78392474 1 + T C UCEC 78392473 + 78392453 78392493 41 TGAAACTAACTTTTGAAGAACTGGAGCGACAAAGACAAGAA TGAAACTAACTTTTGAAGAACCGGAGCGACAAAGACAAGAA < 41bp 0.835735185472551 0.633330218501564 0.30924872 0.48623273 prediction 0.404809933941975 Functional Loss - NEXN ENSG00000162614 CDS Human protein_coding chr1:78392473 chr1:78392474 nonsynonymous SNV 0.985 3 22 hm5C_associated_SNPs_96797 0 0 0 0 1 NEXN chr1:78392401 3'AG 78392401 Downstream 74bp
chr3 50683670 50683670 1 + T C STAD 50683669 + 50683649 50683689 41 CCAGTACGGCTTCCCCAATCCTGAGTGGTCAGAAGTCTCTG CCAGTACGGCTTCCCCAATCCCGAGTGGTCAGAAGTCTCTG < 41bp 0.702404663617946 0.441830262392967 0.08248368 0.04921502 prediction 0.404809327235891 Functional Loss - MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50683669 chr3:50683670 synonymous SNV . 0 22 hm5C_associated_SNPs_96798 0 0 1 0 2 MAPKAPK3 chr3:50683571 3'AG 50683571 Downstream 100bp
chr3 50683670 50683670 1 + T C STAD 50683669 + 50683649 50683689 41 CCAGTACGGCTTCCCCAATCCTGAGTGGTCAGAAGTCTCTG CCAGTACGGCTTCCCCAATCCCGAGTGGTCAGAAGTCTCTG < 41bp 0.702404663617946 0.441830262392967 0.08248368 0.04921502 prediction 0.404809327235891 Functional Loss - MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50683669 chr3:50683670 synonymous SNV . 0 22 hm5C_associated_SNPs_96798 0 0 1 0 2 MAPKAPK3 chr3:50683695 5'GT 50683695 Upstream 26bp
chr17 7943265 7943265 1 + G T HNSC 7943261 + 7943241 7943281 41 ACCACCCTGTGCTCCAGCAACAGCGCCAGGAGGAGCTTCAG ACCACCCTGTGCTCCAGCAACAGCTCCAGGAGGAGCTTCAG < 41bp 0.734320043002739 0.531915413980181 0.85630506 0.81865335 prediction 0.404809258045117 Functional Loss - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7943261 chr17:7943265 nonsynonymous SNV 0.794 5 25 hm5C_associated_SNPs_96799 0 0 0 0 2 ALOX15B chr17:7943220 3'AG 7943220 Downstream 46bp
chr17 7943265 7943265 1 + G T HNSC 7943261 + 7943241 7943281 41 ACCACCCTGTGCTCCAGCAACAGCGCCAGGAGGAGCTTCAG ACCACCCTGTGCTCCAGCAACAGCTCCAGGAGGAGCTTCAG < 41bp 0.734320043002739 0.531915413980181 0.85630506 0.81865335 prediction 0.404809258045117 Functional Loss - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7943261 chr17:7943265 nonsynonymous SNV 0.794 5 25 hm5C_associated_SNPs_96799 0 0 0 0 2 ALOX15B chr17:7943301 5'GT 7943301 Upstream 37bp
chr2 74742953 74742953 1 + C T UCEC 74742950 + 74742930 74742970 41 GCCAAGGCCTTGCGCATGACCGACGCACAGGTCAAAACGTG GCCAAGGCCTTGCGCATGACCGATGCACAGGTCAAAACGTG < 41bp 0.70240445557573 0.498576069682486 0.80500174 0.5579892 prediction 0.404808911151459 Functional Loss - TLX2 ENSG00000115297 CDS Human protein_coding chr2:74742950 chr2:74742953 synonymous SNV 0.995 1 24 hm5C_associated_SNPs_96800 0 0 0 0 1 TLX2 chr2:74742997 5'GT 74742997 Upstream 45bp
chr19 39907024 39907024 1 + C T LUAD 39907021 + 39907001 39907041 41 GACTTGGAGAACAGCAGCAGCGCCGGGGGTATTGCCGAGTG GACTTGGAGAACAGCAGCAGCGCTGGGGGTATTGCCGAGTG < 41bp 0.765053463584501 0.562650712076606 0.51234835 0.42516273 prediction 0.40480550301579 Functional Loss - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39907021 chr19:39907024 synonymous SNV . 0 24 hm5C_associated_SNPs_96802 0 0 1 0 1 PLEKHG2 chr19:39906988 3'AG 39906988 Downstream 37bp
chr22 50617443 50617443 1 + G A UCEC 50617440 + 50617420 50617460 41 TTCCCTCGGGGGGCCCGTTCCACGTCCGCTCACCTCCCGCC TTCCCTCGGGGGGCCCGTTCCACATCCGCTCACCTCCCGCC < 41bp 0.824289349896495 0.621887842349757 0.69541246 0.2973238 prediction 0.404803015093475 Functional Loss - PANX2 ENSG00000073150 CDS Human protein_coding chr22:50617440 chr22:50617443 nonsynonymous SNV 0.384 0 24 hm5C_associated_SNPs_96803 0 0 0 0 1 PANX2 chr22:50617363 3'AG 50617363 Downstream 81bp
chr7 7612109 7612109 1 + G T LUSC 7612106 + 7612086 7612126 41 CCTTTGATCACATCAGTAAACATGAGCGGTACCAAACCTGA CCTTTGATCACATCAGTAAACATTAGCGGTACCAAACCTGA < 41bp 0.702396723329013 0.454440361133433 0.23771486 0.0468328 prediction 0.404793446658025 Functional Loss - MIOS ENSG00000164654 CDS Human protein_coding chr7:7612106 chr7:7612109 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_96806 0 0 1 0 1 MIOS chr7:7612067 3'AG 7612067 Downstream 43bp
chr20 39978766 39978766 1 + G T rs140402475 39978764 + 39978744 39978784 41 CTGGGGCAACCTCTCCTCCTCGGGGAGGACCCAGCACTCCC CTGGGGCAACCTCTCCTCCTCGTGGAGGACCCAGCACTCCC < 41bp 0.924041536818849 0.721646557361369 0.91287434 0.8487227 prediction 0.404789958914961 Functional Loss - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39978764 chr20:39978766 synonymous SNV . 0 23 hm5C_associated_SNPs_96809 0 0 0 0 1 LPIN3 chr20:39978695 3'AG 39978695 Downstream 72bp
chr11 111404530 111404530 1 + G A rs61764071 111404527 + 111404507 111404547 41 AAACAAAGAGAAGAAAGGATCTCGGTGAGACCAATAGTGAG AAACAAAGAGAAGAAAGGATCTCAGTGAGACCAATAGTGAG < 41bp 0.775085105655318 0.572694716775999 0.25429153 0.16177687 prediction 0.404780777758637 Functional Loss - C11orf88 ENSG00000183644 CDS Human protein_coding chr11:111404527 chr11:111404530 synonymous SNV . 0 24 hm5C_associated_SNPs_96811 0 0 0 0 2 C11orf88 chr11:111404471 3'AG 111404471 Downstream 60bp
chr11 111404530 111404530 1 + G A rs61764071 111404527 + 111404507 111404547 41 AAACAAAGAGAAGAAAGGATCTCGGTGAGACCAATAGTGAG AAACAAAGAGAAGAAAGGATCTCAGTGAGACCAATAGTGAG < 41bp 0.775085105655318 0.572694716775999 0.25429153 0.16177687 prediction 0.404780777758637 Functional Loss - C11orf88 ENSG00000183644 CDS Human protein_coding chr11:111404527 chr11:111404530 synonymous SNV . 0 24 hm5C_associated_SNPs_96811 0 0 0 0 2 C11orf88 chr11:111404530 5'GT 111404530 Upstream 1bp
chr7 128483527 128483527 1 + G A UCEC 128483524 + 128483504 128483544 41 AGGGAGCCGGCAAGGCCAAGCTGGATGTGCAGTTTGCAGGG AGGGAGCCGGCAAGGCCAAGCTGAATGTGCAGTTTGCAGGG < 41bp 0.819769568188594 0.617381077889103 0.74246824 0.7283983 prediction 0.404776980598983 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128483524 chr7:128483527 nonsynonymous SNV 0.988 2 24 hm5C_associated_SNPs_96812 0 0 1 0 1 FLNC chr7:128483462 3'AG 128483462 Downstream 66bp
chr11 64065623 64065623 1 + G A COAD 64065620 + 64065600 64065640 41 ACTCCCCGGCCTATCAGCCGCTGGTGTGGTTCTGGATCCTG ACTCCCCGGCCTATCAGCCGCTGATGTGGTTCTGGATCCTG < 41bp 0.702386251503239 0.459114909628676 0.40994406 0.37974024 prediction 0.404772503006477 Functional Loss - KCNK4 ENSG00000182450 CDS Human protein_coding chr11:64065620 chr11:64065623 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_96813 0 0 0 0 2 KCNK4 chr11:64065582 3'AG 64065582 Downstream 42bp
chr11 64065623 64065623 1 + G A COAD 64065620 + 64065600 64065640 41 ACTCCCCGGCCTATCAGCCGCTGGTGTGGTTCTGGATCCTG ACTCCCCGGCCTATCAGCCGCTGATGTGGTTCTGGATCCTG < 41bp 0.702386251503239 0.459114909628676 0.40994406 0.37974024 prediction 0.404772503006477 Functional Loss - KCNK4 ENSG00000182450 CDS Human protein_coding chr11:64065620 chr11:64065623 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_96813 0 0 0 0 2 KCNK4 chr11:64065721 5'GT 64065721 Upstream 99bp
chr5 96271832 96271832 1 + G C rs543713716 96271831 + 96271811 96271851 41 AGTAGGAAGCTCGGGCGCTCCGGCTGTAAGGAGCCGCGGCG AGTAGGAAGCTCGGGCGCTCCCGCTGTAAGGAGCCGCGGCG < 41bp 0.763659936721151 0.561277701171606 0.8709513 0.72527564 prediction 0.40476447109909 Functional Loss - LNPEP ENSG00000113441 UTR5 Human protein_coding chr5:96271831 chr5:96271832 . . 0 22 hm5C_associated_SNPs_96817 0 0 1 0 1 LNPEP chr5:96271878 5'GT 96271878 Upstream 47bp
chr3 184009935 184009935 1 + G T LUAD 184009931 + 184009911 184009951 41 GCCCTGCCCGCTTCCGCGTGCTGGGCACTCTCTCCAACTCC GCCCTGCCCGCTTCCGCGTGCTGGTCACTCTCTCCAACTCC < 41bp 0.7516712694345 0.549292019531262 0.3450917 0.16642791 prediction 0.404758499806475 Functional Loss - ECE2 ENSG00000145194 CDS Human protein_coding chr3:184009931 chr3:184009935 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_96819 0 0 0 0 1 ECE2 chr3:184009850 3'AG 184009850 Downstream 86bp
chr1 196927075 196927075 1 + C T SKCM 196927072 + 196927052 196927092 41 TATTGACAATGGAGACATTACTTCATTCCTGTTGTCAGTAT TATTGACAATGGAGACATTACTTTATTCCTGTTGTCAGTAT < 41bp 0.783378613956991 0.581006306371796 0.23129758 0.042272598 prediction 0.404744615170392 Functional Loss - CFHR2 ENSG00000080910 CDS Human protein_coding chr1:196927072 chr1:196927075 nonsynonymous SNV 0.647 1 24 hm5C_associated_SNPs_96822 0 0 0 0 1 CFHR2 chr1:196927021 3'AG 196927021 Downstream 55bp
chr6 311892 311892 1 + C T COAD 311890 + 311870 311910 41 TCTCTGACAGATGCCAGAGACGCGGAACAATTGAGCAAGAA TCTCTGACAGATGCCAGAGACGTGGAACAATTGAGCAAGAA < 41bp 0.70237206157423 0.445327348231073 0.50513697 0.5639706 prediction 0.40474412314846 Functional Loss - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:311890 chr6:311892 nonsynonymous SNV 0.652 0 23 hm5C_associated_SNPs_96823 0 0 1 0 2 DUSP22 chr6:311880 3'AG 311880 Downstream 13bp
chr6 311892 311892 1 + C T COAD 311890 + 311870 311910 41 TCTCTGACAGATGCCAGAGACGCGGAACAATTGAGCAAGAA TCTCTGACAGATGCCAGAGACGTGGAACAATTGAGCAAGAA < 41bp 0.70237206157423 0.445327348231073 0.50513697 0.5639706 prediction 0.40474412314846 Functional Loss - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:311890 chr6:311892 nonsynonymous SNV 0.652 0 23 hm5C_associated_SNPs_96823 0 0 1 0 2 DUSP22 chr6:311962 5'GT 311962 Upstream 71bp
chr9 35042344 35042344 1 + C T UCEC 35042341 + 35042321 35042361 41 CATGCCCTAGCCTGCAGACACTGCGGCAGCAGCTGCTTCCA CATGCCCTAGCCTGCAGACACTGTGGCAGCAGCTGCTTCCA < 41bp 0.731712372663862 0.529345209191369 0.6154713 0.3724223 prediction 0.404734326944986 Functional Loss - C9orf131 ENSG00000174038 CDS Human protein_coding chr9:35042341 chr9:35042344 synonymous SNV . 0 24 hm5C_associated_SNPs_96826 0 0 0 0 1 C9orf131 chr9:35042377 5'GT 35042377 Upstream 34bp
chr12 71834033 71834033 1 + C T BLCA 71834031 + 71834011 71834051 41 GACTGCTCCGACCTGGGGCTCTCGGAGCTGCCTTCCAACCT GACTGCTCCGACCTGGGGCTCTTGGAGCTGCCTTCCAACCT < 41bp 0.835419324835219 0.633054851199566 0.8902099 0.8850362 prediction 0.404728947271307 Functional Loss - LGR5 ENSG00000139292 CDS Human protein_coding chr12:71834031 chr12:71834033 nonsynonymous SNV 0.966 2 23 hm5C_associated_SNPs_96829 0 0 0 0 1 LGR5 chr12:71834072 5'GT 71834072 Upstream 40bp
chrX 119387346 119387346 1 + C T KIRP 119387343 + 119387323 119387363 41 TGCTGAACTCCTTGAATGAGCAACGTGGCCATGGACTCTTC TGCTGAACTCCTTGAATGAGCAATGTGGCCATGGACTCTTC < 41bp 0.713621291806275 0.511259632638297 0.1256442 0.09947398 prediction 0.404723318335954 Functional Loss - ZBTB33 ENSG00000177485 CDS Human protein_coding chrX:119387343 chrX:119387346 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_96831 0 0 1 0 1 ZBTB33 chrX:119387269 3'AG 119387269 Downstream 78bp
chr3 9974383 9974383 1 + G A BLCA 9974380 + 9974360 9974400 41 CTCCTTCTCAAAAAGGATCACGCGAAAGGTGAGCGCTTCCC CTCCTTCTCAAAAAGGATCACGCAAAAGGTGAGCGCTTCCC < 41bp 0.789007117153841 0.586646195271579 0.3804877 0.12224108 prediction 0.404721843764524 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9974380 chr3:9974383 synonymous SNV . 0 24 hm5C_associated_SNPs_96833 0 0 0 0 2 IL17RC chr3:9974292 3'AG 9974292 Downstream 92bp
chr3 9974383 9974383 1 + G A BLCA 9974380 + 9974360 9974400 41 CTCCTTCTCAAAAAGGATCACGCGAAAGGTGAGCGCTTCCC CTCCTTCTCAAAAAGGATCACGCAAAAGGTGAGCGCTTCCC < 41bp 0.789007117153841 0.586646195271579 0.3804877 0.12224108 prediction 0.404721843764524 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9974380 chr3:9974383 synonymous SNV . 0 24 hm5C_associated_SNPs_96833 0 0 0 0 2 IL17RC chr3:9974387 5'GT 9974387 Upstream 5bp
chr1 45115605 45115605 1 + C T STAD 45115602 + 45115582 45115622 41 ATCCAGTGTTGGCACGTGCACTGCGAGGAGTGCTGGCTGCG ATCCAGTGTTGGCACGTGCACTGTGAGGAGTGCTGGCTGCG < 41bp 0.773322648614301 0.570963764223721 0.15504098 0.06798452 prediction 0.40471776878116 Functional Loss - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45115602 chr1:45115605 synonymous SNV . 0 24 hm5C_associated_SNPs_96834 0 0 1 0 2 RNF220 chr1:45115555 3'AG 45115555 Downstream 51bp
chr1 45115605 45115605 1 + C T STAD 45115602 + 45115582 45115622 41 ATCCAGTGTTGGCACGTGCACTGCGAGGAGTGCTGGCTGCG ATCCAGTGTTGGCACGTGCACTGTGAGGAGTGCTGGCTGCG < 41bp 0.773322648614301 0.570963764223721 0.15504098 0.06798452 prediction 0.40471776878116 Functional Loss - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45115602 chr1:45115605 synonymous SNV . 0 24 hm5C_associated_SNPs_96834 0 0 1 0 2 RNF220 chr1:45115629 5'GT 45115629 Upstream 25bp
chr17 40839964 40839964 1 + C T LUAD 40839962 + 40839942 40839982 41 GGGCAGGTCAACGTGTCCATCGCGCAGAGCGGCCGAAAGAA GGGCAGGTCAACGTGTCCATCGTGCAGAGCGGCCGAAAGAA < 41bp 0.702357347496834 0.437274664573439 0.16757771 0.16361344 prediction 0.404714694993668 Functional Loss - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40839962 chr17:40839964 nonsynonymous SNV 0.983 0 23 hm5C_associated_SNPs_96836 0 0 0 0 1 CNTNAP1 chr17:40839999 5'GT 40839999 Upstream 36bp
chr17 73733500 73733500 1 + C T UCEC 73733497 + 73733477 73733517 41 GACGGCGCCCCTGGGCCCAACAGCACTGTCCTGGTGCACAA GACGGCGCCCCTGGGCCCAACAGTACTGTCCTGGTGCACAA < 41bp 0.746742922496038 0.544392299715896 0.6308428 0.5180249 prediction 0.404701245560284 Functional Loss - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73733497 chr17:73733500 synonymous SNV . 0 24 hm5C_associated_SNPs_96841 0 0 0 0 1 ITGB4 chr17:73733403 3'AG 73733403 Downstream 98bp
chr11 63988121 63988121 1 + C T KICH 63988118 + 63988098 63988138 41 GCCTCGTTGCCCCCCGTTTCCAGCGAAAGTTCAAGGCCAAG GCCTCGTTGCCCCCCGTTTCCAGTGAAAGTTCAAGGCCAAG < 41bp 0.702548072606403 0.500198738438177 0.8378997 0.3652974 prediction 0.404698668336452 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63988118 chr11:63988121 stopgain 0.997 1 24 hm5C_associated_SNPs_96845 1 0 1 0 1 FERMT3 chr11:63988141 5'GT 63988141 Upstream 21bp
chr1 154296135 154296135 1 + C T LUAD 154296132 + 154296112 154296152 41 CAGACGGAACAAGGGAGTCCCTGCGGGTCTGGAGCCTGTGG CAGACGGAACAAGGGAGTCCCTGTGGGTCTGGAGCCTGTGG < 41bp 0.702336541676594 0.4821991239164 0.16796693 0.17597714 prediction 0.404673083353188 Functional Loss - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154296132 chr1:154296135 nonsynonymous SNV 0.982 2 24 hm5C_associated_SNPs_96855 0 0 0 0 1 AQP10 chr1:154296065 3'AG 154296065 Downstream 71bp
chr17 35734888 35734888 1 + G T UCEC 35734884 + 35734864 35734904 41 CCAAAAGACGTGAGAAGCATCAGAGAATTGCAAATGCAAGG CCAAAAGACGTGAGAAGCATCAGATAATTGCAAATGCAAGG < 41bp 0.729500994988289 0.527164499902574 0.85845524 0.3462478 prediction 0.40467299017143 Functional Loss - C17orf78 ENSG00000167230 CDS Human other chr17:35734884 chr17:35734888 stopgain 0.221 0 25 hm5C_associated_SNPs_96856 0 0 0 0 2 C17orf78 chr17:35734817 3'AG 35734817 Downstream 72bp
chr17 35734888 35734888 1 + G T UCEC 35734884 + 35734864 35734904 41 CCAAAAGACGTGAGAAGCATCAGAGAATTGCAAATGCAAGG CCAAAAGACGTGAGAAGCATCAGATAATTGCAAATGCAAGG < 41bp 0.729500994988289 0.527164499902574 0.85845524 0.3462478 prediction 0.40467299017143 Functional Loss - C17orf78 ENSG00000167230 CDS Human other chr17:35734884 chr17:35734888 stopgain 0.221 0 25 hm5C_associated_SNPs_96856 0 0 0 0 2 C17orf78 chr17:35734903 5'GT 35734903 Upstream 16bp
chr10 90574373 90574373 1 + G T ESCA 90574371 + 90574351 90574391 41 CAGGAAAAGATCTATTATGTCGGCTATTCACAGGGCACCAC CAGGAAAAGATCTATTATGTCGTCTATTCACAGGGCACCAC < 41bp 0.702335898069274 0.352250046665396 0.30275613 0.18404499 prediction 0.404671796138548 Functional Loss - LIPM ENSG00000173239 CDS Human protein_coding chr10:90574371 chr10:90574373 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_96858 0 0 0 0 2 LIPM chr10:90574287 3'AG 90574287 Downstream 87bp
chr10 90574373 90574373 1 + G T ESCA 90574371 + 90574351 90574391 41 CAGGAAAAGATCTATTATGTCGGCTATTCACAGGGCACCAC CAGGAAAAGATCTATTATGTCGTCTATTCACAGGGCACCAC < 41bp 0.702335898069274 0.352250046665396 0.30275613 0.18404499 prediction 0.404671796138548 Functional Loss - LIPM ENSG00000173239 CDS Human protein_coding chr10:90574371 chr10:90574373 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_96858 0 0 0 0 2 LIPM chr10:90574396 5'GT 90574396 Upstream 24bp
chr10 92631801 92631801 1 + G A LGG 92631798 + 92631778 92631818 41 GTTCTGACCTGAAGGCTCTGCGCGGACTTGTGGAGACAGCC GTTCTGACCTGAAGGCTCTGCGCAGACTTGTGGAGACAGCC < 41bp 0.7023351390155 0.471325764609269 0.29282147 0.09696525 prediction 0.404670278031 Functional Loss - RPP30 ENSG00000148688 CDS Human protein_coding chr10:92631798 chr10:92631801 nonsynonymous SNV 0.174 0 24 hm5C_associated_SNPs_96859 0 0 1 0 1 RPP30 chr10:92631825 5'GT 92631825 Upstream 25bp
chr1 196927141 196927141 1 + T C HNSC 196927140 + 196927120 196927160 41 AGTGCCAGAACTTGTATCAACTTGAGGGTAACAATCAAATA AGTGCCAGAACTTGTATCAACCTGAGGGTAACAATCAAATA < 41bp 0.822334553237504 0.619999611569543 0.13798651 0.09835765 prediction 0.404669883335923 Functional Loss - CFHR2 ENSG00000080910 CDS Human protein_coding chr1:196927140 chr1:196927141 nonsynonymous SNV 0.018 3 22 hm5C_associated_SNPs_96860 0 0 0 0 1 CFHR2 chr1:196927203 5'GT 196927203 Upstream 63bp
chr22 50633419 50633419 1 + C T COAD 50633416 + 50633396 50633436 41 AGATGGACGAGAGCACGCTGCTGCGGGAGGCCCAGGAGCTC AGATGGACGAGAGCACGCTGCTGTGGGAGGCCCAGGAGCTC < 41bp 0.739782767278144 0.537448676912476 0.21992323 0.17094699 prediction 0.404668180731335 Functional Loss - TRABD ENSG00000170638 CDS Human protein_coding chr22:50633416 chr22:50633419 nonsynonymous SNV 0.956 2 24 hm5C_associated_SNPs_96862 0 0 1 0 2 TRABD chr22:50633329 3'AG 50633329 Downstream 91bp
chr22 50633419 50633419 1 + C T COAD 50633416 + 50633396 50633436 41 AGATGGACGAGAGCACGCTGCTGCGGGAGGCCCAGGAGCTC AGATGGACGAGAGCACGCTGCTGTGGGAGGCCCAGGAGCTC < 41bp 0.739782767278144 0.537448676912476 0.21992323 0.17094699 prediction 0.404668180731335 Functional Loss - TRABD ENSG00000170638 CDS Human protein_coding chr22:50633416 chr22:50633419 nonsynonymous SNV 0.956 2 24 hm5C_associated_SNPs_96862 0 0 1 0 2 TRABD chr22:50633469 5'GT 50633469 Upstream 51bp
chr19 37427735 37427735 1 + G A LUSC 37427732 + 37427712 37427752 41 CTGCTCAAAGAAACTTGTATCGAGATGTGATGCTGGAGAAC CTGCTCAAAGAAACTTGTATCGAAATGTGATGCTGGAGAAC < 41bp 0.80438959775338 0.602055782278511 0.93144023 0.90592456 prediction 0.404667630949738 Functional Loss - ZNF568 ENSG00000198453 CDS Human protein_coding chr19:37427732 chr19:37427735 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_96863 0 0 1 0 2 ZNF568 chr19:37427648 3'AG 37427648 Downstream 88bp
chr19 37427735 37427735 1 + G A LUSC 37427732 + 37427712 37427752 41 CTGCTCAAAGAAACTTGTATCGAGATGTGATGCTGGAGAAC CTGCTCAAAGAAACTTGTATCGAAATGTGATGCTGGAGAAC < 41bp 0.80438959775338 0.602055782278511 0.93144023 0.90592456 prediction 0.404667630949738 Functional Loss - ZNF568 ENSG00000198453 CDS Human protein_coding chr19:37427732 chr19:37427735 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_96863 0 0 1 0 2 ZNF568 chr19:37427774 5'GT 37427774 Upstream 40bp
chrX 37652927 37652927 1 + C T COAD 37652925 + 37652905 37652945 41 CTGCCCTTTTCAGCGATTCACACCATTGCACATCTATTTAA CTGCCCTTTTCAGCGATTCACATCATTGCACATCTATTTAA < 41bp 0.702332168990662 0.402136655919807 0.03260863 0.028556824 prediction 0.404664337981324 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37652925 chrX:37652927 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_96865 0 0 0 0 1 CYBB chrX:37652918 3'AG 37652918 Downstream 10bp
chr7 141820157 141820157 1 + C T UCEC 141820154 + 141820134 141820174 41 CCCCAGTCGGAAAGGATAGACTGCACACCTGACCAGGAGGT CCCCAGTCGGAAAGGATAGACTGTACACCTGACCAGGAGGT < 41bp 0.766305838980172 0.563974565012868 0.12340483 0.10265142 prediction 0.404662547934607 Functional Loss - MGAM2 ENSG00000257743 CDS Human protein_coding chr7:141820154 chr7:141820157 synonymous SNV . 0 24 hm5C_associated_SNPs_96866 0 0 0 0 2 MGAM2 chr7:141820102 3'AG 141820102 Downstream 56bp
chr7 141820157 141820157 1 + C T UCEC 141820154 + 141820134 141820174 41 CCCCAGTCGGAAAGGATAGACTGCACACCTGACCAGGAGGT CCCCAGTCGGAAAGGATAGACTGTACACCTGACCAGGAGGT < 41bp 0.766305838980172 0.563974565012868 0.12340483 0.10265142 prediction 0.404662547934607 Functional Loss - MGAM2 ENSG00000257743 CDS Human protein_coding chr7:141820154 chr7:141820157 synonymous SNV . 0 24 hm5C_associated_SNPs_96866 0 0 0 0 2 MGAM2 chr7:141820181 5'GT 141820181 Upstream 25bp
chr14 24649071 24649071 1 + G T UCEC 24649069 + 24649049 24649089 41 AGCAGCCTGGTGTCACCTCTCAGCCCCCGCAGGATGGCTGC AGCAGCCTGGTGTCACCTCTCATCCCCCGCAGGATGGCTGC < 41bp 0.702329871183025 0.336164563005335 0.84206265 0.0983561 prediction 0.40465974236605 Functional Loss - REC8 ENSG00000100918 CDS Human protein_coding chr14:24649069 chr14:24649071 nonsynonymous SNV 0.945 0 23 hm5C_associated_SNPs_96867 0 0 1 0 2 REC8 chr14:24649006 3'AG 24649006 Downstream 66bp
chr14 24649071 24649071 1 + G T UCEC 24649069 + 24649049 24649089 41 AGCAGCCTGGTGTCACCTCTCAGCCCCCGCAGGATGGCTGC AGCAGCCTGGTGTCACCTCTCATCCCCCGCAGGATGGCTGC < 41bp 0.702329871183025 0.336164563005335 0.84206265 0.0983561 prediction 0.40465974236605 Functional Loss - REC8 ENSG00000100918 CDS Human protein_coding chr14:24649069 chr14:24649071 nonsynonymous SNV 0.945 0 23 hm5C_associated_SNPs_96867 0 0 1 0 2 REC8 chr14:24649112 5'GT 24649112 Upstream 42bp
chr2 69046419 69046419 1 + C T LGG 69046416 + 69046396 69046436 41 GCTGGGATGCCACTGAAGACCTCCGAATTTCTAGGACAGAC GCTGGGATGCCACTGAAGACCTCTGAATTTCTAGGACAGAC < 41bp 0.702328538519029 0.464131778379097 0.68939805 0.33973682 prediction 0.404657077038058 Functional Loss - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69046416 chr2:69046419 stopgain 0.414 0 24 hm5C_associated_SNPs_96869 0 0 0 0 1 ARHGAP25 chr2:69046451 5'GT 69046451 Upstream 33bp
chr2 69046418 69046418 1 + C T SKCM 69046416 + 69046396 69046436 41 GCTGGGATGCCACTGAAGACCTCCGAATTTCTAGGACAGAC GCTGGGATGCCACTGAAGACCTTCGAATTTCTAGGACAGAC < 41bp 0.702328538519029 0.409162963234224 0.68939805 0.3103508 prediction 0.404657077038058 Functional Loss - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69046416 chr2:69046418 synonymous SNV . 0 23 hm5C_associated_SNPs_96870 0 0 0 0 1 ARHGAP25 chr2:69046451 5'GT 69046451 Upstream 34bp
chr17 46939646 46939646 1 + G T UCEC 46939643 + 46939623 46939663 41 TTTTATTCTTTTCAGGTATCCAAGAAAGTTCTTCCCCCAGC TTTTATTCTTTTCAGGTATCCAATAAAGTTCTTCCCCCAGC < 41bp 0.702321259865404 0.318439017226983 0.8297806 0.16628927 prediction 0.404642519730808 Functional Loss - CALCOCO2 ENSG00000136436 CDS Human protein_coding chr17:46939643 chr17:46939646 stopgain 0.926 1 24 hm5C_associated_SNPs_96872 0 0 1 0 2 CALCOCO2 chr17:46939638 3'AG 46939638 Downstream 9bp
chr17 46939646 46939646 1 + G T UCEC 46939643 + 46939623 46939663 41 TTTTATTCTTTTCAGGTATCCAAGAAAGTTCTTCCCCCAGC TTTTATTCTTTTCAGGTATCCAATAAAGTTCTTCCCCCAGC < 41bp 0.702321259865404 0.318439017226983 0.8297806 0.16628927 prediction 0.404642519730808 Functional Loss - CALCOCO2 ENSG00000136436 CDS Human protein_coding chr17:46939643 chr17:46939646 stopgain 0.926 1 24 hm5C_associated_SNPs_96872 0 0 1 0 2 CALCOCO2 chr17:46939666 5'GT 46939666 Upstream 21bp
chr1 154226413 154226413 1 + G A UCEC 154226410 + 154226390 154226430 41 CAATTTCATCTAACCAGAGTCAGGAGTCTGGTTATCAGAGC CAATTTCATCTAACCAGAGTCAGAAGTCTGGTTATCAGAGC < 41bp 0.793294961408686 0.590975018362302 0.70341474 0.28173906 prediction 0.404639886092769 Functional Loss - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154226410 chr1:154226413 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_96873 0 0 1 0 1 UBAP2L chr1:154226376 3'AG 154226376 Downstream 38bp
chr8 76456176 76456176 1 + C T SKCM 76456173 + 76456153 76456193 41 TGTGATGGGTGCAAGGGTTTCTTCAGACGCAGCATTCGTAA TGTGATGGGTGCAAGGGTTTCTTTAGACGCAGCATTCGTAA < 41bp 0.780757288569783 0.578439914638142 0.651487 0.32720423 prediction 0.404634747863282 Functional Loss - HNF4G ENSG00000164749 CDS Human protein_coding chr8:76456173 chr8:76456176 synonymous SNV . 0 24 hm5C_associated_SNPs_96875 0 0 0 0 1 HNF4G chr8:76456214 5'GT 76456214 Upstream 39bp
chr10 102743539 102743539 1 - C A LGG 102743543 - 102743523 102743563 41 GAGACTGTCTGCAGTTGCACCGCAGATCCTCCTGCCCGGCT GAGACTGTCTGCAGTTGCACCGCATATCCTCCTGCCCGGCT < 41bp 0.723528632245378 0.521212006205953 0.25683516 0.08925253 prediction 0.404633252078851 Functional Loss - MRPL43;SEMA4G ENSG00000055950;ENSG00000095539 CDS Human other chr10:102743543 chr10:102743539 nonsynonymous SNV 0.823 3 25 hm5C_associated_SNPs_96876 0 0 0 0 2 MRPL43;SEMA4G chr10:102743512 5'GT 102743512 Upstream 28bp
chr10 102743539 102743539 1 - C A LGG 102743543 - 102743523 102743563 41 GAGACTGTCTGCAGTTGCACCGCAGATCCTCCTGCCCGGCT GAGACTGTCTGCAGTTGCACCGCATATCCTCCTGCCCGGCT < 41bp 0.723528632245378 0.521212006205953 0.25683516 0.08925253 prediction 0.404633252078851 Functional Loss - MRPL43;SEMA4G ENSG00000055950;ENSG00000095539 CDS Human other chr10:102743543 chr10:102743539 nonsynonymous SNV 0.823 3 25 hm5C_associated_SNPs_96876 0 0 0 0 2 MRPL43;SEMA4G chr10:102743574 3'AG 102743574 Downstream 36bp
chr11 34680239 34680239 1 + G T PRAD 34680237 + 34680217 34680257 41 TGGGGTAAAAAGAAGAACAACAGCAGCATGACCTATGAAAA TGGGGTAAAAAGAAGAACAACATCAGCATGACCTATGAAAA < 41bp 0.70231436753074 0.365852990322348 0.21142519 0.038434684 prediction 0.40462873506148 Functional Loss - EHF ENSG00000135373 CDS Human protein_coding chr11:34680237 chr11:34680239 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_96877 0 0 0 0 1 EHF chr11:34680275 5'GT 34680275 Upstream 37bp
chr2 162751258 162751258 1 + G A LUSC 162751255 + 162751235 162751275 41 TATCAGGAATTGATGAGTTTCTGGATCAGGTTACTGTTCTC TATCAGGAATTGATGAGTTTCTGAATCAGGTTACTGTTCTC < 41bp 0.77833515766546 0.576021303064805 0.3878834 0.15793073 prediction 0.404627709201311 Functional Loss - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162751255 chr2:162751258 stopgain 1.000 4 24 hm5C_associated_SNPs_96878 0 0 1 1 2 SLC4A10 chr2:162751189 3'AG 162751189 Downstream 70bp
chr2 162751258 162751258 1 + G A LUSC 162751255 + 162751235 162751275 41 TATCAGGAATTGATGAGTTTCTGGATCAGGTTACTGTTCTC TATCAGGAATTGATGAGTTTCTGAATCAGGTTACTGTTCTC < 41bp 0.77833515766546 0.576021303064805 0.3878834 0.15793073 prediction 0.404627709201311 Functional Loss - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162751255 chr2:162751258 stopgain 1.000 4 24 hm5C_associated_SNPs_96878 0 0 1 1 2 SLC4A10 chr2:162751335 5'GT 162751335 Upstream 78bp
chr19 33602757 33602757 1 + C T rs10420258 33602755 + 33602735 33602775 41 CCTTGTCCTCCAGGTTCACTCACGCCAAGGAGGAGGATGAC CCTTGTCCTCCAGGTTCACTCATGCCAAGGAGGAGGATGAC < 41bp 0.702311731325363 0.416127352196035 0.30853975 0.23321572 prediction 0.404623462650726 Functional Loss - GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33602755 chr19:33602757 synonymous SNV . 0 23 hm5C_associated_SNPs_96881 0 0 1 0 1 GPATCH1 chr19:33602808 5'GT 33602808 Upstream 52bp
chr6 161530849 161530849 1 + G T LUAD 161530847 + 161530827 161530867 41 CTTTAGAAGAGGTGTCAAGGCTGGGACTTCAGGAACATGTG CTTTAGAAGAGGTGTCAAGGCTTGGACTTCAGGAACATGTG < 41bp 0.702309879621551 0.360341652157084 0.4301843 0.14051363 prediction 0.404619759243101 Functional Loss - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161530847 chr6:161530849 synonymous SNV . 0 23 hm5C_associated_SNPs_96885 0 0 1 2 1 MAP3K4 chr6:161530787 3'AG 161530787 Downstream 63bp
chr12 58139636 58139636 1 + C T SKCM 58139633 + 58139613 58139653 41 TTGCTGTGGGAGTCTTCCTTCTCCTTATTGCAGTGGCTGGA TTGCTGTGGGAGTCTTCCTTCTCTTTATTGCAGTGGCTGGA < 41bp 0.702308944165546 0.474547500860434 0.33846813 0.24644265 prediction 0.404617888331093 Functional Loss - TSPAN31 ENSG00000135452 CDS Human protein_coding chr12:58139633 chr12:58139636 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_96886 0 0 1 0 2 TSPAN31 chr12:58139656 5'GT 58139656 Upstream 21bp
chr12 58139636 58139636 1 + C T SKCM 58139633 + 58139613 58139653 41 TTGCTGTGGGAGTCTTCCTTCTCCTTATTGCAGTGGCTGGA TTGCTGTGGGAGTCTTCCTTCTCTTTATTGCAGTGGCTGGA < 41bp 0.702308944165546 0.474547500860434 0.33846813 0.24644265 prediction 0.404617888331093 Functional Loss - TSPAN31 ENSG00000135452 CDS Human protein_coding chr12:58139633 chr12:58139636 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_96886 0 0 1 0 2 TSPAN31 chr12:58139695 5'GT 58139695 Upstream 60bp
chr10 114057948 114057948 1 + G C HNSC 114057944 + 114057924 114057964 41 CTCTCCAAGGTGTGGTTACACTGTGAGACGTTCATCTGCGA CTCTCCAAGGTGTGGTTACACTGTCAGACGTTCATCTGCGA < 41bp 0.702306566437034 0.408196173890847 0.27663502 0.07397255 prediction 0.404613132874067 Functional Loss - TECTB ENSG00000119913 CDS Human protein_coding chr10:114057944 chr10:114057948 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_96888 0 0 0 0 1 TECTB chr10:114057989 5'GT 114057989 Upstream 42bp
chr7 71036308 71036308 1 + G T SARC 71036306 + 71036286 71036326 41 GGCTGCTCGTTCGTGGTCAACAGGAAGTTCTTCGGTGAAAT GGCTGCTCGTTCGTGGTCAACATGAAGTTCTTCGGTGAAAT < 41bp 0.702306540330498 0.374147948179284 0.7555051 0.41912994 prediction 0.404613080660996 Functional Loss - GALNT17 ENSG00000185274 CDS Human protein_coding chr7:71036306 chr7:71036308 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_96889 0 0 0 0 2 GALNT17 chr7:71036270 3'AG 71036270 Downstream 39bp
chr7 71036308 71036308 1 + G T SARC 71036306 + 71036286 71036326 41 GGCTGCTCGTTCGTGGTCAACAGGAAGTTCTTCGGTGAAAT GGCTGCTCGTTCGTGGTCAACATGAAGTTCTTCGGTGAAAT < 41bp 0.702306540330498 0.374147948179284 0.7555051 0.41912994 prediction 0.404613080660996 Functional Loss - GALNT17 ENSG00000185274 CDS Human protein_coding chr7:71036306 chr7:71036308 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_96889 0 0 0 0 2 GALNT17 chr7:71036387 5'GT 71036387 Upstream 80bp
chr7 71036309 71036309 1 + G A SKCM 71036306 + 71036286 71036326 41 GGCTGCTCGTTCGTGGTCAACAGGAAGTTCTTCGGTGAAAT GGCTGCTCGTTCGTGGTCAACAGAAAGTTCTTCGGTGAAAT < 41bp 0.702306540330498 0.471467004116615 0.7555051 0.5753005 prediction 0.404613080660996 Functional Loss - GALNT17 ENSG00000185274 CDS Human protein_coding chr7:71036306 chr7:71036309 synonymous SNV . 0 24 hm5C_associated_SNPs_96890 0 0 0 0 2 GALNT17 chr7:71036270 3'AG 71036270 Downstream 40bp
chr7 71036309 71036309 1 + G A SKCM 71036306 + 71036286 71036326 41 GGCTGCTCGTTCGTGGTCAACAGGAAGTTCTTCGGTGAAAT GGCTGCTCGTTCGTGGTCAACAGAAAGTTCTTCGGTGAAAT < 41bp 0.702306540330498 0.471467004116615 0.7555051 0.5753005 prediction 0.404613080660996 Functional Loss - GALNT17 ENSG00000185274 CDS Human protein_coding chr7:71036306 chr7:71036309 synonymous SNV . 0 24 hm5C_associated_SNPs_96890 0 0 0 0 2 GALNT17 chr7:71036387 5'GT 71036387 Upstream 79bp
chr4 1305894 1305894 1 + C T SKCM 1305892 + 1305872 1305912 41 AGCGGCTGCCCCGCCGTGGACTCCGTGGTCAGCCTGCTGGA AGCGGCTGCCCCGCCGTGGACTTCGTGGTCAGCCTGCTGGA < 41bp 0.870611830726191 0.66830656796634 0.38543546 0.35918027 prediction 0.404610525519703 Functional Loss - MAEA ENSG00000090316 CDS Human protein_coding chr4:1305892 chr4:1305894 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_96892 0 0 1 1 1 MAEA chr4:1305949 5'GT 1305949 Upstream 56bp
chr11 10506453 10506453 1 + G A SKCM 10506450 + 10506430 10506470 41 TGGATTACTTGGTCCACATGCAGGGGGGCATCCTCTTTGTG TGGATTACTTGGTCCACATGCAGAGGGGCATCCTCTTTGTG < 41bp 0.835351173392437 0.633048007972574 0.93014634 0.915824 prediction 0.404606330839727 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10506450 chr11:10506453 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_96893 0 0 0 0 2 AMPD3 chr11:10506367 3'AG 10506367 Downstream 87bp
chr11 10506453 10506453 1 + G A SKCM 10506450 + 10506430 10506470 41 TGGATTACTTGGTCCACATGCAGGGGGGCATCCTCTTTGTG TGGATTACTTGGTCCACATGCAGAGGGGCATCCTCTTTGTG < 41bp 0.835351173392437 0.633048007972574 0.93014634 0.915824 prediction 0.404606330839727 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10506450 chr11:10506453 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_96893 0 0 0 0 2 AMPD3 chr11:10506453 3'AG 10506453 Downstream 1bp
chr9 139701235 139701235 1 + C T HNSC 139701233 + 139701213 139701253 41 AAGTGGTGCTCTCCAACACCCTCGATTTGAACAGCAAGCTG AAGTGGTGCTCTCCAACACCCTTGATTTGAACAGCAAGCTG < 41bp 0.868970778647999 0.666668010403095 0.78309655 0.07256132 prediction 0.404605536489809 Functional Loss - CCDC183 ENSG00000213213 CDS Human protein_coding chr9:139701233 chr9:139701235 synonymous SNV . 0 23 hm5C_associated_SNPs_96894 0 0 1 0 2 CCDC183 chr9:139701209 3'AG 139701209 Downstream 27bp
chr9 139701235 139701235 1 + C T HNSC 139701233 + 139701213 139701253 41 AAGTGGTGCTCTCCAACACCCTCGATTTGAACAGCAAGCTG AAGTGGTGCTCTCCAACACCCTTGATTTGAACAGCAAGCTG < 41bp 0.868970778647999 0.666668010403095 0.78309655 0.07256132 prediction 0.404605536489809 Functional Loss - CCDC183 ENSG00000213213 CDS Human protein_coding chr9:139701233 chr9:139701235 synonymous SNV . 0 23 hm5C_associated_SNPs_96894 0 0 1 0 2 CCDC183 chr9:139701319 5'GT 139701319 Upstream 85bp
chr19 14815924 14815924 1 + C T LIHC 14815921 + 14815901 14815941 41 CTCCATAGAAGAGAGGGAGACACCATTGACTCGAGAGGACC CTCCATAGAAGAGAGGGAGACACTATTGACTCGAGAGGACC < 41bp 0.770992856341368 0.568692250130972 0.4173667 0.25759354 prediction 0.404601212420792 Functional Loss - ZNF333 ENSG00000160961 CDS Human protein_coding chr19:14815921 chr19:14815924 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_96897 0 0 1 0 2 ZNF333 chr19:14815866 3'AG 14815866 Downstream 59bp
chr19 14815924 14815924 1 + C T LIHC 14815921 + 14815901 14815941 41 CTCCATAGAAGAGAGGGAGACACCATTGACTCGAGAGGACC CTCCATAGAAGAGAGGGAGACACTATTGACTCGAGAGGACC < 41bp 0.770992856341368 0.568692250130972 0.4173667 0.25759354 prediction 0.404601212420792 Functional Loss - ZNF333 ENSG00000160961 CDS Human protein_coding chr19:14815921 chr19:14815924 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_96897 0 0 1 0 2 ZNF333 chr19:14815982 5'GT 14815982 Upstream 59bp
chr2 74438945 74438945 1 + G A UCEC 74438942 + 74438922 74438962 41 ATGTGGGAATAAATAGAGTTCACGATCCTGTAACTGCCAAA ATGTGGGAATAAATAGAGTTCACAATCCTGTAACTGCCAAA < 41bp 0.801756769342777 0.599458280648621 0.04013455 0.044089496 prediction 0.40459697738831 Functional Loss - MTHFD2 ENSG00000065911 CDS Human protein_coding chr2:74438942 chr2:74438945 nonsynonymous SNV 0.763 3 24 hm5C_associated_SNPs_96898 0 0 1 0 2 MTHFD2 chr2:74438868 3'AG 74438868 Downstream 78bp
chr2 74438945 74438945 1 + G A UCEC 74438942 + 74438922 74438962 41 ATGTGGGAATAAATAGAGTTCACGATCCTGTAACTGCCAAA ATGTGGGAATAAATAGAGTTCACAATCCTGTAACTGCCAAA < 41bp 0.801756769342777 0.599458280648621 0.04013455 0.044089496 prediction 0.40459697738831 Functional Loss - MTHFD2 ENSG00000065911 CDS Human protein_coding chr2:74438942 chr2:74438945 nonsynonymous SNV 0.763 3 24 hm5C_associated_SNPs_96898 0 0 1 0 2 MTHFD2 chr2:74438993 5'GT 74438993 Upstream 49bp
chr12 132405711 132405711 1 + G T ESCA 132405707 + 132405687 132405727 41 GGCTGCGTCCCACGCTACCACAAGGCCCTGCTGCTCCTGGA GGCTGCGTCCCACGCTACCACAAGTCCCTGCTGCTCCTGGA < 41bp 0.709186914015704 0.506890907989556 0.8636161 0.35431647 prediction 0.404592012052296 Functional Loss - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132405707 chr12:132405711 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_96899 0 0 1 0 1 ULK1 chr12:132405645 3'AG 132405645 Downstream 67bp
chr18 32459636 32459636 1 + T C UCS 32459635 + 32459615 32459655 41 GCAAATCCATGCCCGAAAACCTGGGTACATTCACAGTGGAG GCAAATCCATGCCCGAAAACCCGGGTACATTCACAGTGGAG < 41bp 0.755584894545849 0.553289996589626 0.82169306 0.8792045 prediction 0.404589795912446 Functional Loss - DTNA ENSG00000134769 CDS Human protein_coding chr18:32459635 chr18:32459636 synonymous SNV . 0 22 hm5C_associated_SNPs_96900 0 0 0 0 1 DTNA chr18:32459683 5'GT 32459683 Upstream 48bp
chr12 49943420 49943420 1 + C T STAD 49943417 + 49943397 49943437 41 GTGAACAATGGCATCGACACCACCGAGGTGCGGCCTCCGGG GTGAACAATGGCATCGACACCACTGAGGTGCGGCCTCCGGG < 41bp 0.702293444805806 0.492655000606653 0.19660759 0.31180322 prediction 0.404586889611612 Functional Loss - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49943417 chr12:49943420 synonymous SNV . 0 24 hm5C_associated_SNPs_96902 0 0 0 0 1 KCNH3 chr12:49943423 5'GT 49943423 Upstream 4bp
chr17 46681315 46681315 1 + G T SARC 46681311 + 46681291 46681331 41 GTTTCCTCTCCCTCGCCGGCCTCGGCGGAGATTCCAGGCCC GTTTCCTCTCCCTCGCCGGCCTCGTCGGAGATTCCAGGCCC < 41bp 0.702291690461561 0.496516700939679 0.7830887 0.35184693 prediction 0.404583380923123 Functional Loss - HOXB-AS3 ENSG00000233101 ncRNA_exonic Human antisense chr17:46681311 chr17:46681315 . . 0 25 hm5C_associated_SNPs_96905 0 0 0 0 1 HOXB-AS3 chr17:46681289 3'AG 46681289 Downstream 27bp
chr21 45855047 45855047 1 + C T rs138013251 45855045 + 45855025 45855065 41 GCCGCACAGGACTGCGTGGGCGCGGGAGCCTCAGCTGCTTC GCCGCACAGGACTGCGTGGGCGTGGGAGCCTCAGCTGCTTC < 41bp 0.837389274875221 0.635100595247877 0.78543186 0.8023286 prediction 0.404577359254689 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45855045 chr21:45855047 synonymous SNV . 0 23 hm5C_associated_SNPs_96906 0 0 0 0 2 TRPM2 chr21:45855014 3'AG 45855014 Downstream 34bp
chr21 45855047 45855047 1 + C T rs138013251 45855045 + 45855025 45855065 41 GCCGCACAGGACTGCGTGGGCGCGGGAGCCTCAGCTGCTTC GCCGCACAGGACTGCGTGGGCGTGGGAGCCTCAGCTGCTTC < 41bp 0.837389274875221 0.635100595247877 0.78543186 0.8023286 prediction 0.404577359254689 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45855045 chr21:45855047 synonymous SNV . 0 23 hm5C_associated_SNPs_96906 0 0 0 0 2 TRPM2 chr21:45855100 5'GT 45855100 Upstream 54bp
chr2 242097264 242097264 1 + A T LGG 242097260 + 242097240 242097280 41 TGGACATGGAAACCATCAACCTGGACAGAGATGCAGAGGTA TGGACATGGAAACCATCAACCTGGTCAGAGATGCAGAGGTA < 41bp 0.910328655029257 0.708040742387162 0.31915292 0.23180848 prediction 0.40457582528419 Functional Loss - PPP1R7 ENSG00000115685 CDS Human protein_coding chr2:242097260 chr2:242097264 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_96907 0 0 1 0 2 PPP1R7 chr2:242097222 3'AG 242097222 Downstream 43bp
chr2 242097264 242097264 1 + A T LGG 242097260 + 242097240 242097280 41 TGGACATGGAAACCATCAACCTGGACAGAGATGCAGAGGTA TGGACATGGAAACCATCAACCTGGTCAGAGATGCAGAGGTA < 41bp 0.910328655029257 0.708040742387162 0.31915292 0.23180848 prediction 0.40457582528419 Functional Loss - PPP1R7 ENSG00000115685 CDS Human protein_coding chr2:242097260 chr2:242097264 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_96907 0 0 1 0 2 PPP1R7 chr2:242097277 5'GT 242097277 Upstream 14bp
chr19 1042173 1042173 1 + C T GBM 1042171 + 1042151 1042191 41 ACGCTGAGGGCTGCACGCAGCACGGGTGAGGAGGCCGGGGG ACGCTGAGGGCTGCACGCAGCATGGGTGAGGAGGCCGGGGG < 41bp 0.776125285881318 0.573837805177281 0.66650766 0.54214966 prediction 0.404574961408074 Functional Loss - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1042171 chr19:1042173 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_96908 0 0 0 0 1 ABCA7 chr19:1042175 5'GT 1042175 Upstream 3bp
chr16 31131698 31131698 1 + C T COAD 31131695 + 31131675 31131715 41 ACGAGTGGGTAGACAAGAACCGGCTGGCGCTGACCAAGACA ACGAGTGGGTAGACAAGAACCGGTTGGCGCTGACCAAGACA < 41bp 0.759653440343211 0.557366396509757 0.48423168 0.29146245 prediction 0.404574087666908 Functional Loss - KAT8 ENSG00000103510 CDS Human protein_coding chr16:31131695 chr16:31131698 synonymous SNV . 0 24 hm5C_associated_SNPs_96910 0 0 1 0 1 KAT8 chr16:31131660 3'AG 31131660 Downstream 39bp
chr9 130982346 130982346 1 + G A KIRP 130982343 + 130982323 130982363 41 GCCCGTGATGTGCTGGAGAACAAGCTGCTCCCCCTGCGCAG GCCCGTGATGTGCTGGAGAACAAACTGCTCCCCCTGCGCAG < 41bp 0.702285870311225 0.438829330157019 0.3361891 0.13295683 prediction 0.40457174062245 Functional Loss - DNM1 ENSG00000106976 CDS Human protein_coding chr9:130982343 chr9:130982346 synonymous SNV . 0 24 hm5C_associated_SNPs_96911 0 0 1 0 2 DNM1 chr9:130982267 3'AG 130982267 Downstream 80bp
chr9 130982346 130982346 1 + G A KIRP 130982343 + 130982323 130982363 41 GCCCGTGATGTGCTGGAGAACAAGCTGCTCCCCCTGCGCAG GCCCGTGATGTGCTGGAGAACAAACTGCTCCCCCTGCGCAG < 41bp 0.702285870311225 0.438829330157019 0.3361891 0.13295683 prediction 0.40457174062245 Functional Loss - DNM1 ENSG00000106976 CDS Human protein_coding chr9:130982343 chr9:130982346 synonymous SNV . 0 24 hm5C_associated_SNPs_96911 0 0 1 0 2 DNM1 chr9:130982365 5'GT 130982365 Upstream 20bp
chr9 72520929 72520929 1 + G A rs141342918 72520926 + 72520906 72520946 41 AGAAAATGCCGTTCTCAGTTCACGGATCTAAATGGTTCTAA AGAAAATGCCGTTCTCAGTTCACAGATCTAAATGGTTCTAA < 41bp 0.799304438317047 0.597025824857298 0.17669314 0.08549085 prediction 0.404557226919497 Functional Loss - C9orf135 ENSG00000204711 CDS Human protein_coding chr9:72520926 chr9:72520929 synonymous SNV . 0 24 hm5C_associated_SNPs_96915 0 0 0 0 1 C9orf135 chr9:72520870 3'AG 72520870 Downstream 60bp
chr17 78092152 78092152 1 + G T LGG 78092150 + 78092130 78092170 41 ACACAGGTCATCTTCCTGGCCAGGAATGTGAGTCCTGGGGC ACACAGGTCATCTTCCTGGCCATGAATGTGAGTCCTGGGGC < 41bp 0.915216831312654 0.712938344298202 0.8584367 0.14876002 prediction 0.404556974028903 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78092150 chr17:78092152 nonsynonymous SNV 0.020 1 23 hm5C_associated_SNPs_96917 0 0 1 0 1 GAA chr17:78092156 5'GT 78092156 Upstream 5bp
chr21 43531059 43531059 1 + C T STAD 43531057 + 43531037 43531077 41 GTAACGGTCCCAGGTCTTGGCACGGGAACAGCAGCCCTCGG GTAACGGTCCCAGGTCTTGGCATGGGAACAGCAGCCCTCGG < 41bp 0.817853279882402 0.615575959993342 0.7587219 0.5837006 prediction 0.40455463977812 Functional Loss - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43531057 chr21:43531059 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_96918 0 0 0 0 1 UMODL1 chr21:43530990 3'AG 43530990 Downstream 70bp
chr1 78383306 78383306 1 + A T HNSC 78383304 + 78383284 78383324 41 ACCTATGTACCAAAACTTGGCAAGGGTGATGTAAAGGATAA ACCTATGTACCAAAACTTGGCATGGGTGATGTAAAGGATAA < 41bp 0.724268533792952 0.521991505479467 0.322599 0.19522321 prediction 0.404554056626971 Functional Loss - NEXN ENSG00000162614 CDS Human protein_coding chr1:78383304 chr1:78383306 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_96919 0 0 0 0 1 NEXN chr1:78383251 3'AG 78383251 Downstream 56bp
chr19 35827129 35827129 1 + G A SKCM 35827126 + 35827106 35827146 41 ACCATCAAGTCTGTCTTCACCCGGAGCGAGCTCAAGTTCTC ACCATCAAGTCTGTCTTCACCCGAAGCGAGCTCAAGTTCTC < 41bp 0.826371942312412 0.624098288876475 0.8537098 0.41788954 prediction 0.404547306871875 Functional Loss - CD22 ENSG00000012124 CDS Human protein_coding chr19:35827126 chr19:35827129 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_96922 0 0 0 0 1 CD22 chr19:35827052 3'AG 35827052 Downstream 78bp
chr1 248039229 248039229 1 + C T GBM 248039226 + 248039206 248039246 41 TGTAAAGCTGGATCCCGCCACGGCGCACCCGAGTCTGCTCT TGTAAAGCTGGATCCCGCCACGGTGCACCCGAGTCTGCTCT < 41bp 0.725593764698814 0.523328606184603 0.15909478 0.16847277 prediction 0.404530317028421 Functional Loss - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039226 chr1:248039229 nonsynonymous SNV 0.014 4 24 hm5C_associated_SNPs_96925 0 0 0 0 1 TRIM58 chr1:248039202 3'AG 248039202 Downstream 28bp
chr12 7459204 7459204 1 + G T UCEC 7459200 + 7459180 7459220 41 GATGAGGTAAAATGGAGCTTCAGAGAACTGGGCTCCTTGTC GATGAGGTAAAATGGAGCTTCAGATAACTGGGCTCCTTGTC < 41bp 0.757880686605368 0.55562020202618 0.87222356 0.8265619 prediction 0.404520969158376 Functional Loss - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7459200 chr12:7459204 stopgain 0.763 0 25 hm5C_associated_SNPs_96928 0 0 0 0 1 ACSM4 chr12:7459129 3'AG 7459129 Downstream 76bp
chr1 233802670 233802670 1 + G A CESC 233802667 + 233802647 233802687 41 TTTCCCTGAGCACCATTGGCCTGGGGGATTATGTGCCTGGG TTTCCCTGAGCACCATTGGCCTGAGGGATTATGTGCCTGGG < 41bp 0.702250981024334 0.462631362598809 0.5401037 0.18626463 prediction 0.404501962048668 Functional Loss - KCNK1 ENSG00000135750 CDS Human protein_coding chr1:233802667 chr1:233802670 nonsynonymous SNV 0.981 4 24 hm5C_associated_SNPs_96934 0 0 1 0 1 KCNK1 chr1:233802736 5'GT 233802736 Upstream 67bp
chr19 12087964 12087964 1 + A T LUAD 12087960 + 12087940 12087980 41 GAAGTGATGCTGGAAACTTTCAGGAACCTGACCTCTATAGG GAAGTGATGCTGGAAACTTTCAGGTACCTGACCTCTATAGG < 41bp 0.891713160604625 0.689465514048175 0.92260355 0.90023106 prediction 0.404495293112901 Functional Loss - ZNF763 ENSG00000197054;ENSG00000267179 CDS Human other chr19:12087960 chr19:12087964 nonsynonymous SNV 0.027 3 25 hm5C_associated_SNPs_96939 0 0 0 0 1 ZNF763 chr19:12087979 5'GT 12087979 Upstream 16bp
chr5 1212505 1212505 1 + C T SKCM 1212503 + 1212483 1212523 41 ATCTCCACGTCCATCAGCGACTCGGGCTCCATCCAGTGGTG ATCTCCACGTCCATCAGCGACTTGGGCTCCATCCAGTGGTG < 41bp 0.702246996926541 0.432302211155277 0.13995555 0.18264964 prediction 0.404493993853082 Functional Loss - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1212503 chr5:1212505 nonsynonymous SNV 0.760 2 23 hm5C_associated_SNPs_96941 0 0 0 0 1 SLC6A19 chr5:1212599 5'GT 1212599 Upstream 95bp
chr19 19627133 19627133 1 + G T LUSC 19627129 + 19627109 19627149 41 ACAAACGGAACTTGCCGCGTCGAGGACTGTCGGGTCAGTAT ACAAACGGAACTTGCCGCGTCGAGTACTGTCGGGTCAGTAT < 41bp 0.737841891533242 0.535606530880619 0.6927432 0.3630214 prediction 0.404470721305245 Functional Loss - NDUFA13 ENSG00000186010;ENSG00000250067;ENSG00000258674 CDS Human other chr19:19627129 chr19:19627133 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_96945 0 0 1 0 1 NDUFA13 chr19:19627141 5'GT 19627141 Upstream 9bp
chr12 6499444 6499444 1 + G T UCEC 6499440 + 6499420 6499460 41 AGGCAGGGGTGCCGCAACAGCAGAGTCCTCTGGACCTGACC AGGCAGGGGTGCCGCAACAGCAGATTCCTCTGGACCTGACC < 41bp 0.745246511488933 0.543013601983871 0.86294115 0.7464164 prediction 0.404465819010124 Functional Loss - LTBR ENSG00000111321 CDS Human protein_coding chr12:6499440 chr12:6499444 nonsynonymous SNV 0.180 2 25 hm5C_associated_SNPs_96946 0 0 1 0 1 LTBR chr12:6499506 5'GT 6499506 Upstream 63bp
chr15 90278737 90278737 1 + G A SKCM 90278734 + 90278714 90278754 41 CCTATAGGCCTGTAAAGCACCTGGATAAAACCATCTGTGCC CCTATAGGCCTGTAAAGCACCTGAATAAAACCATCTGTGCC < 41bp 0.813344005372791 0.611112502877294 0.3081264 0.13178799 prediction 0.404463004990994 Functional Loss - WDR93 ENSG00000140527 CDS Human protein_coding chr15:90278734 chr15:90278737 nonsynonymous SNV 0.016 0 24 hm5C_associated_SNPs_96948 0 0 0 0 2 WDR93 chr15:90278721 3'AG 90278721 Downstream 17bp
chr15 90278737 90278737 1 + G A SKCM 90278734 + 90278714 90278754 41 CCTATAGGCCTGTAAAGCACCTGGATAAAACCATCTGTGCC CCTATAGGCCTGTAAAGCACCTGAATAAAACCATCTGTGCC < 41bp 0.813344005372791 0.611112502877294 0.3081264 0.13178799 prediction 0.404463004990994 Functional Loss - WDR93 ENSG00000140527 CDS Human protein_coding chr15:90278734 chr15:90278737 nonsynonymous SNV 0.016 0 24 hm5C_associated_SNPs_96948 0 0 0 0 2 WDR93 chr15:90278784 5'GT 90278784 Upstream 48bp
chr19 1062286 1062286 1 + G T BRCA 1062283 + 1062263 1062303 41 TGGAGCTGCTTGCGCGCCTGCGCGGTGTCCCGGAGGCCCAG TGGAGCTGCTTGCGCGCCTGCGCTGTGTCCCGGAGGCCCAG < 41bp 0.702228324179212 0.315520853933063 0.88677484 0.19167939 prediction 0.404456648358424 Functional Loss - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1062283 chr19:1062286 nonsynonymous SNV 0.171 4 24 hm5C_associated_SNPs_96951 0 0 1 0 1 ABCA7 chr19:1062312 5'GT 1062312 Upstream 27bp
chr11 65743902 65743902 1 + C T UCEC 65743899 + 65743879 65743919 41 TGAAGAAGCTGGAGTCTCGCCAGCGGGGCTGGGAGGAGGAT TGAAGAAGCTGGAGTCTCGCCAGTGGGGCTGGGAGGAGGAT < 41bp 0.741138484632311 0.538914100369039 0.88985527 0.84105873 prediction 0.404448768526545 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65743899 chr11:65743902 nonsynonymous SNV 0.989 3 24 hm5C_associated_SNPs_96952 0 0 1 0 1 SART1 chr11:65743866 3'AG 65743866 Downstream 37bp
chr2 113742450 113742450 1 + G A SKCM 113742447 + 113742427 113742467 41 TCATGGATCTGTATGGCCAACCCGAGCCCGTGAAACCCTTC TCATGGATCTGTATGGCCAACCCAAGCCCGTGAAACCCTTC < 41bp 0.789423109387621 0.58720010125685 0.09287721 0.17769614 prediction 0.404446016261542 Functional Loss - IL36G ENSG00000136688 CDS Human protein_coding chr2:113742447 chr2:113742450 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_96953 0 0 0 0 1 IL36G chr2:113742417 3'AG 113742417 Downstream 34bp
chr2 220044878 220044878 1 + G A BLCA 220044875 + 220044855 220044895 41 GGCCGCACCTGCTGAGTGTGCCCGAGTTGTGCAGATACCTG GGCCGCACCTGCTGAGTGTGCCCAAGTTGTGCAGATACCTG < 41bp 0.822373815261863 0.620153617797116 0.18342537 0.06288472 prediction 0.404440394929495 Functional Loss - RETREG2 ENSG00000144567 CDS Human protein_coding chr2:220044875 chr2:220044878 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_96957 0 0 1 0 1 RETREG2 chr2:220044967 5'GT 220044967 Upstream 90bp
chr19 30020812 30020812 1 + C T COAD 30020809 + 30020789 30020829 41 GACGAGGGCGTGTACGAGTGCCGCGTGTCGGACTACAGCGA GACGAGGGCGTGTACGAGTGCCGTGTGTCGGACTACAGCGA < 41bp 0.724834877244553 0.522618092596201 0.5806916 0.70499015 prediction 0.404433569296705 Functional Loss - VSTM2B ENSG00000187135 CDS Human protein_coding chr19:30020809 chr19:30020812 synonymous SNV . 0 24 hm5C_associated_SNPs_96962 0 0 0 0 1 VSTM2B chr19:30020726 3'AG 30020726 Downstream 87bp
chr6 46637949 46637949 1 + G A UCEC 46637946 + 46637926 46637966 41 AAGCAGAATAATGAATCAACCACGAGATAAACAAGGAAGGT AAGCAGAATAATGAATCAACCACAAGATAAACAAGGAAGGT < 41bp 0.768994193147966 0.566779138261564 0.07294333 0.028327793 prediction 0.404430109772804 Functional Loss - SLC25A27 ENSG00000153291 CDS Human protein_coding chr6:46637946 chr6:46637949 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_96964 0 0 0 0 2 SLC25A27 chr6:46637872 3'AG 46637872 Downstream 78bp
chr6 46637949 46637949 1 + G A UCEC 46637946 + 46637926 46637966 41 AAGCAGAATAATGAATCAACCACGAGATAAACAAGGAAGGT AAGCAGAATAATGAATCAACCACAAGATAAACAAGGAAGGT < 41bp 0.768994193147966 0.566779138261564 0.07294333 0.028327793 prediction 0.404430109772804 Functional Loss - SLC25A27 ENSG00000153291 CDS Human protein_coding chr6:46637946 chr6:46637949 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_96964 0 0 0 0 2 SLC25A27 chr6:46637964 5'GT 46637964 Upstream 16bp
chr12 97114295 97114295 1 + G A COAD 97114292 + 97114272 97114312 41 GCTGGAGATTGTGGTGGAGGCCCGGCTTCAGCTGGCTGCAG GCTGGAGATTGTGGTGGAGGCCCAGCTTCAGCTGGCTGCAG < 41bp 0.702212288264236 0.453558920565973 0.45149732 0.28323925 prediction 0.404424576528472 Functional Loss - CFAP54 ENSG00000188596 CDS Human protein_coding chr12:97114292 chr12:97114295 nonsynonymous SNV 0.874 1 24 hm5C_associated_SNPs_96965 0 0 0 0 1 CFAP54 chr12:97114343 5'GT 97114343 Upstream 49bp
chr16 76569473 76569473 1 + G T LUAD 76569471 + 76569451 76569491 41 CCACCAGACAGAGAGGCTTTCTGGGCTGCATTCGGTCTCTG CCACCAGACAGAGAGGCTTTCTTGGCTGCATTCGGTCTCTG < 41bp 0.702211820733835 0.348294509715897 0.8667283 0.039141744 prediction 0.404423641467671 Functional Loss - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76569471 chr16:76569473 synonymous SNV . 0 23 hm5C_associated_SNPs_96966 0 0 0 0 1 CNTNAP4 chr16:76569442 3'AG 76569442 Downstream 32bp
chr16 2108821 2108821 1 + C T GBM 2108818 + 2108798 2108838 41 GCATGGCTCTCTGGGGAGCCCACCGGCTCTATTCTCTCAGG GCATGGCTCTCTGGGGAGCCCACTGGCTCTATTCTCTCAGG < 41bp 0.702210540040777 0.493214747235002 0.21841899 0.24511248 prediction 0.404421080081554 Functional Loss - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2108818 chr16:2108821 nonsynonymous SNV 0.993 5 24 hm5C_associated_SNPs_96968 1 0 1 0 2 TSC2 chr16:2108748 3'AG 2108748 Downstream 74bp
chr16 2108821 2108821 1 + C T GBM 2108818 + 2108798 2108838 41 GCATGGCTCTCTGGGGAGCCCACCGGCTCTATTCTCTCAGG GCATGGCTCTCTGGGGAGCCCACTGGCTCTATTCTCTCAGG < 41bp 0.702210540040777 0.493214747235002 0.21841899 0.24511248 prediction 0.404421080081554 Functional Loss - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2108818 chr16:2108821 nonsynonymous SNV 0.993 5 24 hm5C_associated_SNPs_96968 1 0 1 0 2 TSC2 chr16:2108874 5'GT 2108874 Upstream 54bp
chr16 5128781 5128781 1 + C T COAD 5128779 + 5128759 5128799 41 TCAGAACCTGAGGACCCAGTCACGGAGCGGTCGGCCTTCAC TCAGAACCTGAGGACCCAGTCATGGAGCGGTCGGCCTTCAC < 41bp 0.857044439077404 0.65483464770233 0.68325365 0.79116637 prediction 0.404419582750148 Functional Loss - ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128779 chr16:5128781 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_96969 0 0 1 0 2 ALG1 chr16:5128758 3'AG 5128758 Downstream 24bp
chr16 5128781 5128781 1 + C T COAD 5128779 + 5128759 5128799 41 TCAGAACCTGAGGACCCAGTCACGGAGCGGTCGGCCTTCAC TCAGAACCTGAGGACCCAGTCATGGAGCGGTCGGCCTTCAC < 41bp 0.857044439077404 0.65483464770233 0.68325365 0.79116637 prediction 0.404419582750148 Functional Loss - ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128779 chr16:5128781 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_96969 0 0 1 0 2 ALG1 chr16:5128879 5'GT 5128879 Upstream 99bp
chr11 67377938 67377938 1 + C T UCEC 67377936 + 67377916 67377956 41 ATTTTGACGTGTTTGTGGTGCGCGGGGCTGGGGCCTACATC ATTTTGACGTGTTTGTGGTGCGTGGGGCTGGGGCCTACATC < 41bp 0.849641380061473 0.647435985876807 0.5115473 0.7252424 prediction 0.404410788369332 Functional Loss - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67377936 chr11:67377938 synonymous SNV . 0 23 hm5C_associated_SNPs_96973 0 0 1 0 1 NDUFV1 chr11:67377852 3'AG 67377852 Downstream 87bp
chr16 14334274 14334274 1 + C T UCEC 14334271 + 14334251 14334291 41 TCCAGCAGCAGCAGCTGTTCCTGCAACTGCAGATCCTGAGT TCCAGCAGCAGCAGCTGTTCCTGTAACTGCAGATCCTGAGT < 41bp 0.702204551772322 0.470134092482759 0.8952798 0.9066682 prediction 0.404409103544643 Functional Loss - MKL2 ENSG00000186260 CDS Human protein_coding chr16:14334271 chr16:14334274 stopgain 0.565 1 24 hm5C_associated_SNPs_96974 0 0 1 0 1 MKL2 chr16:14334341 5'GT 14334341 Upstream 68bp
chr9 130430413 130430413 1 + G A UCEC 130430410 + 130430390 130430430 41 GTGAAGGAGGTGCTCCTGGACGAGGACGACGACCTGTGGAT GTGAAGGAGGTGCTCCTGGACGAAGACGACGACCTGTGGAT < 41bp 0.840077622989206 0.637874151748551 0.7588576 0.37459233 prediction 0.40440694248131 Functional Loss - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130430410 chr9:130430413 synonymous SNV . 0 24 hm5C_associated_SNPs_96975 0 0 1 0 2 STXBP1 chr9:130430359 3'AG 130430359 Downstream 55bp
chr9 130430413 130430413 1 + G A UCEC 130430410 + 130430390 130430430 41 GTGAAGGAGGTGCTCCTGGACGAGGACGACGACCTGTGGAT GTGAAGGAGGTGCTCCTGGACGAAGACGACGACCTGTGGAT < 41bp 0.840077622989206 0.637874151748551 0.7588576 0.37459233 prediction 0.40440694248131 Functional Loss - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130430410 chr9:130430413 synonymous SNV . 0 24 hm5C_associated_SNPs_96975 0 0 1 0 2 STXBP1 chr9:130430466 5'GT 130430466 Upstream 54bp
chr10 134901598 134901598 1 + G C rs561233698 134901594 + 134901574 134901614 41 GGGGAGCGCAGCGCGTCTGTCTCCGGGAGCGCGGCCCGGCC GGGGAGCGCAGCGCGTCTGTCTCCCGGAGCGCGGCCCGGCC < 41bp 0.702203405885623 0.41169462750955 0.8807514 0.22231072 prediction 0.404406811771246 Functional Loss - ADGRA1 ENSG00000197177 UTR5 Human protein_coding chr10:134901594 chr10:134901598 . . 0 25 hm5C_associated_SNPs_96976 0 0 0 0 1 ADGRA1 chr10:134901642 5'GT 134901642 Upstream 45bp
chr3 45052755 45052755 1 + A T HNSC 45052751 + 45052731 45052771 41 GCAAGCGTGTGGGCAAGGTACTGCATGCCTCCTTGCAGAGT GCAAGCGTGTGGGCAAGGTACTGCTTGCCTCCTTGCAGAGT < 41bp 0.917985081966059 0.715781889664775 0.05558738 0.022559643 prediction 0.404406384602569 Functional Loss - EXOSC7 ENSG00000075914 CDS Human protein_coding chr3:45052751 chr3:45052755 nonsynonymous SNV 0.810 2 25 hm5C_associated_SNPs_96977 0 0 1 0 1 EXOSC7 chr3:45052727 3'AG 45052727 Downstream 29bp
chr1 203467831 203467831 1 + C T COAD 203467828 + 203467808 203467848 41 GGTCTGCCCACCTGCCTGGTCTGCGTGTGCCTCGGTTCCTC GGTCTGCCCACCTGCCTGGTCTGTGTGTGCCTCGGTTCCTC < 41bp 0.780101075326202 0.577901662381411 0.2941921 0.152782 prediction 0.404398825889581 Functional Loss - OPTC ENSG00000188770 CDS Human protein_coding chr1:203467828 chr1:203467831 synonymous SNV . 0 24 hm5C_associated_SNPs_96981 0 0 0 0 1 OPTC chr1:203467809 3'AG 203467809 Downstream 23bp
chr12 132609828 132609828 1 + A C rs549218502 132609827 + 132609807 132609847 41 GCCCGGGGCACAGCCAACCACACAAGTGCAAGTGCAGCCGT GCCCGGGGCACAGCCAACCACCCAAGTGCAAGTGCAGCCGT < 41bp 0.840295816823576 0.638098899382516 0.47796127 0.4118412 prediction 0.40439383488212 Functional Loss - EP400NL ENSG00000185684 UTR3 Human protein_coding chr12:132609827 chr12:132609828 . . 0 22 hm5C_associated_SNPs_96983 0 0 1 0 1 EP400NL chr12:132609739 3'AG 132609739 Downstream 90bp
chr22 32239728 32239728 1 + G A GBM 32239725 + 32239705 32239745 41 CCTGCTGGGTGGAATTCTCCCACGAACGGCTGGAGGAGTAC CCTGCTGGGTGGAATTCTCCCACAAACGGCTGGAGGAGTAC < 41bp 0.77861020326534 0.576413444200361 0.18240109 0.03681457 prediction 0.404393518129958 Functional Loss - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32239725 chr22:32239728 nonsynonymous SNV 0.985 3 24 hm5C_associated_SNPs_96984 0 0 0 1 2 DEPDC5 chr22:32239631 3'AG 32239631 Downstream 98bp
chr22 32239728 32239728 1 + G A GBM 32239725 + 32239705 32239745 41 CCTGCTGGGTGGAATTCTCCCACGAACGGCTGGAGGAGTAC CCTGCTGGGTGGAATTCTCCCACAAACGGCTGGAGGAGTAC < 41bp 0.77861020326534 0.576413444200361 0.18240109 0.03681457 prediction 0.404393518129958 Functional Loss - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32239725 chr22:32239728 nonsynonymous SNV 0.985 3 24 hm5C_associated_SNPs_96984 0 0 0 1 2 DEPDC5 chr22:32239798 5'GT 32239798 Upstream 71bp
chr8 27364474 27364474 1 + C T COAD 27364472 + 27364452 27364492 41 ATCCTGGTCCAGGACACTGACACGGCCCTGAAAGAACTGGA ATCCTGGTCCAGGACACTGACATGGCCCTGAAAGAACTGGA < 41bp 0.702196180446859 0.426697088039471 0.01101926 0.02147916 prediction 0.404392360893718 Functional Loss - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27364472 chr8:27364474 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_96985 0 0 1 0 2 EPHX2 chr8:27364389 3'AG 27364389 Downstream 86bp
chr8 27364474 27364474 1 + C T COAD 27364472 + 27364452 27364492 41 ATCCTGGTCCAGGACACTGACACGGCCCTGAAAGAACTGGA ATCCTGGTCCAGGACACTGACATGGCCCTGAAAGAACTGGA < 41bp 0.702196180446859 0.426697088039471 0.01101926 0.02147916 prediction 0.404392360893718 Functional Loss - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27364472 chr8:27364474 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_96985 0 0 1 0 2 EPHX2 chr8:27364511 5'GT 27364511 Upstream 38bp
chr19 5771046 5771046 1 + G A OV 5771043 + 5771023 5771063 41 AGCAGCTGGGCTGTCCTCTCCTCGTCTACTATGACACCCTA AGCAGCTGGGCTGTCCTCTCCTCATCTACTATGACACCCTA < 41bp 0.702194721886024 0.448254034258264 0.3535484 0.111126155 prediction 0.404389443772049 Functional Loss - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5771043 chr19:5771046 nonsynonymous SNV 0.433 2 24 hm5C_associated_SNPs_96988 0 0 0 0 2 CATSPERD chr19:5770955 3'AG 5770955 Downstream 92bp
chr19 5771046 5771046 1 + G A OV 5771043 + 5771023 5771063 41 AGCAGCTGGGCTGTCCTCTCCTCGTCTACTATGACACCCTA AGCAGCTGGGCTGTCCTCTCCTCATCTACTATGACACCCTA < 41bp 0.702194721886024 0.448254034258264 0.3535484 0.111126155 prediction 0.404389443772049 Functional Loss - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5771043 chr19:5771046 nonsynonymous SNV 0.433 2 24 hm5C_associated_SNPs_96988 0 0 0 0 2 CATSPERD chr19:5771083 5'GT 5771083 Upstream 38bp
chr15 85325929 85325929 1 + A C UCEC 85325925 + 85325905 85325945 41 CCATGGGGGATATGAAAACCCCAGATTTTGATGACCTTCTG CCATGGGGGATATGAAAACCCCAGCTTTTGATGACCTTCTG < 41bp 0.702190851688964 0.300514445206053 0.13319859 0.112710595 prediction 0.404381703377929 Functional Loss - ZNF592 ENSG00000166716 CDS Human protein_coding chr15:85325925 chr15:85325929 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_96989 0 0 1 0 1 ZNF592 chr15:85325888 3'AG 85325888 Downstream 42bp
chr18 63477136 63477136 1 + A T LUAD 63477132 + 63477112 63477152 41 TCACCAACAAACCCGTGGAGCCCGAGTCGGAGTTTGTCATC TCACCAACAAACCCGTGGAGCCCGTGTCGGAGTTTGTCATC < 41bp 0.702190714900236 0.354784195822979 0.03359449 0.015725553 prediction 0.404381429800472 Functional Loss - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63477132 chr18:63477136 nonsynonymous SNV 0.933 3 25 hm5C_associated_SNPs_96990 0 0 0 0 1 CDH7 chr18:63477234 5'GT 63477234 Upstream 99bp
chr18 63477135 63477135 1 + G A UCEC 63477132 + 63477112 63477152 41 TCACCAACAAACCCGTGGAGCCCGAGTCGGAGTTTGTCATC TCACCAACAAACCCGTGGAGCCCAAGTCGGAGTTTGTCATC < 41bp 0.702190714900236 0.453535338032075 0.03359449 0.031755388 prediction 0.404381429800472 Functional Loss - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63477132 chr18:63477135 nonsynonymous SNV 0.937 2 24 hm5C_associated_SNPs_96992 0 0 0 0 1 CDH7 chr18:63477234 5'GT 63477234 Upstream 100bp
chr16 90066327 90066327 1 + G A rs111591653 90066324 + 90066304 90066344 41 CAGGAGCAGCTCTTCGACCGCACGTGCATGATGCTCGGGGG CAGGAGCAGCTCTTCGACCGCACATGCATGATGCTCGGGGG < 41bp 0.702189313111649 0.491446026494972 0.20016336 0.09161574 prediction 0.404378626223298 Functional Loss - AFG3L1P ENSG00000223959 ncRNA_exonic Human transcribed_unitary_pseudogene chr16:90066324 chr16:90066327 . . 0 24 hm5C_associated_SNPs_96993 0 0 0 0 1 AFG3L1P chr16:90066232 3'AG 90066232 Downstream 96bp
chr22 25251317 25251317 1 + G T COAD 25251313 + 25251293 25251333 41 GATCACTTCTGGACCGATCCCTCGGCTGACGAACTTGTCCA GATCACTTCTGGACCGATCCCTCGTCTGACGAACTTGTCCA < 41bp 0.747115685250634 0.544928762354325 0.13117191 0.11707267 prediction 0.404373845792618 Functional Loss - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25251313 chr22:25251317 nonsynonymous SNV 0.102 4 25 hm5C_associated_SNPs_96994 0 0 0 0 2 SGSM1 chr22:25251252 3'AG 25251252 Downstream 66bp
chr22 25251317 25251317 1 + G T COAD 25251313 + 25251293 25251333 41 GATCACTTCTGGACCGATCCCTCGGCTGACGAACTTGTCCA GATCACTTCTGGACCGATCCCTCGTCTGACGAACTTGTCCA < 41bp 0.747115685250634 0.544928762354325 0.13117191 0.11707267 prediction 0.404373845792618 Functional Loss - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25251313 chr22:25251317 nonsynonymous SNV 0.102 4 25 hm5C_associated_SNPs_96994 0 0 0 0 2 SGSM1 chr22:25251397 5'GT 25251397 Upstream 81bp
chr2 73477477 73477477 1 + T C LUSC 73477476 + 73477456 73477496 41 CCCAAGGCCAAGACATGCACCTTCATTCTCCGTGGCGGCGC CCCAAGGCCAAGACATGCACCCTCATTCTCCGTGGCGGCGC < 41bp 0.702180876279011 0.419867358251625 0.2320368 0.017904311 prediction 0.404361752558022 Functional Loss - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73477476 chr2:73477477 nonsynonymous SNV 0.979 1 22 hm5C_associated_SNPs_96997 0 0 1 0 2 CCT7 chr2:73477434 3'AG 73477434 Downstream 44bp
chr2 73477477 73477477 1 + T C LUSC 73477476 + 73477456 73477496 41 CCCAAGGCCAAGACATGCACCTTCATTCTCCGTGGCGGCGC CCCAAGGCCAAGACATGCACCCTCATTCTCCGTGGCGGCGC < 41bp 0.702180876279011 0.419867358251625 0.2320368 0.017904311 prediction 0.404361752558022 Functional Loss - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73477476 chr2:73477477 nonsynonymous SNV 0.979 1 22 hm5C_associated_SNPs_96997 0 0 1 0 2 CCT7 chr2:73477566 5'GT 73477566 Upstream 90bp
chr14 103059661 103059661 1 + C T SARC 103059658 + 103059638 103059678 41 GCGGTGGTGCCCGACTTCGACCCCGGTGAGTAGCGGCCCCG GCGGTGGTGCCCGACTTCGACCCTGGTGAGTAGCGGCCCCG < 41bp 0.702179193550137 0.498317200769146 0.088130504 0.09673393 prediction 0.404358387100273 Functional Loss - RCOR1 ENSG00000089902 CDS Human protein_coding chr14:103059658 chr14:103059661 synonymous SNV . 0 24 hm5C_associated_SNPs_96999 0 0 1 0 2 RCOR1 chr14:103059603 3'AG 103059603 Downstream 59bp
chr14 103059661 103059661 1 + C T SARC 103059658 + 103059638 103059678 41 GCGGTGGTGCCCGACTTCGACCCCGGTGAGTAGCGGCCCCG GCGGTGGTGCCCGACTTCGACCCTGGTGAGTAGCGGCCCCG < 41bp 0.702179193550137 0.498317200769146 0.088130504 0.09673393 prediction 0.404358387100273 Functional Loss - RCOR1 ENSG00000089902 CDS Human protein_coding chr14:103059658 chr14:103059661 synonymous SNV . 0 24 hm5C_associated_SNPs_96999 0 0 1 0 2 RCOR1 chr14:103059662 5'GT 103059662 Upstream 2bp
chr15 42138406 42138406 1 + G C BLCA 42138402 + 42138382 42138422 41 CCCCACCTTGCCTGTGTAGACAAGGAGCAGGTCCCCCTTCT CCCCACCTTGCCTGTGTAGACAAGCAGCAGGTCCCCCTTCT < 41bp 0.702178101995076 0.44200925049028 0.65996164 0.14521211 prediction 0.404356203990152 Functional Loss - JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42138402 chr15:42138406 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_97000 0 0 0 0 1 JMJD7-PLA2G4B;PLA2G4B chr15:42138401 3'AG 42138401 Downstream 6bp
chr14 69908917 69908917 1 + G A BRCA 69908914 + 69908894 69908934 41 ATGCCTATATTGGTGTTTCCCTCGTTCTGGGCTTCGTTTTC ATGCCTATATTGGTGTTTCCCTCATTCTGGGCTTCGTTTTC < 41bp 0.702177949038505 0.459653782769649 0.0801208 0.082009405 prediction 0.404355898077009 Functional Loss - SLC39A9 ENSG00000029364 CDS Human protein_coding chr14:69908914 chr14:69908917 nonsynonymous SNV 0.895 2 24 hm5C_associated_SNPs_97001 0 0 1 0 1 SLC39A9 chr14:69908983 5'GT 69908983 Upstream 67bp
chr14 69908916 69908916 1 + C T SKCM 69908914 + 69908894 69908934 41 ATGCCTATATTGGTGTTTCCCTCGTTCTGGGCTTCGTTTTC ATGCCTATATTGGTGTTTCCCTTGTTCTGGGCTTCGTTTTC < 41bp 0.702177949038505 0.399085919000263 0.0801208 0.09113571 prediction 0.404355898077009 Functional Loss - SLC39A9 ENSG00000029364 CDS Human protein_coding chr14:69908914 chr14:69908916 synonymous SNV . 0 23 hm5C_associated_SNPs_97002 0 0 1 0 1 SLC39A9 chr14:69908983 5'GT 69908983 Upstream 68bp
chr19 55106194 55106194 1 + G A SKCM 55106191 + 55106171 55106211 41 GTGATCACCCAGGGGAGTCCCGTGACCCTCTGGTGTCAGGG GTGATCACCCAGGGGAGTCCCGTAACCCTCTGGTGTCAGGG < 41bp 0.702176669835522 0.450257205284506 0.16408837 0.09383753 prediction 0.404353339671045 Functional Loss - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55106191 chr19:55106194 synonymous SNV . 0 24 hm5C_associated_SNPs_97003 0 0 0 0 1 LILRA1 chr19:55106130 3'AG 55106130 Downstream 65bp
chrX 153170618 153170618 1 + A T rs5196 153170614 + 153170594 153170634 41 CCCACCATGCTCATGGCGTCCACCACTTCCGGTAAGGCTTG CCCACCATGCTCATGGCGTCCACCTCTTCCGGTAAGGCTTG < 41bp 0.702172932502761 0.377626416325045 0.28579974 0.22457531 prediction 0.404345865005521 Functional Loss - AVPR2 ENSG00000126895 CDS Human protein_coding chrX:153170614 chrX:153170618 nonsynonymous SNV 0.044 0 25 hm5C_associated_SNPs_97008 1 0 0 0 1 AVPR2 chrX:153170624 5'GT 153170624 Upstream 7bp
chr3 119426384 119426384 1 + G C LUAD 119426380 + 119426360 119426400 41 GGAAGGGACATAAGGAGAAACACAGAGAAGCCCTCCGGCAG GGAAGGGACATAAGGAGAAACACACAGAAGCCCTCCGGCAG < 41bp 0.702172184650453 0.398267593799105 0.33476168 0.0053073466 prediction 0.404344369300906 Functional Loss - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119426380 chr3:119426384 nonsynonymous SNV 0.093 1 25 hm5C_associated_SNPs_97009 0 0 0 0 1 MAATS1 chr3:119426408 5'GT 119426408 Upstream 25bp
chr11 9430080 9430080 1 + G A BLCA 9430077 + 9430057 9430097 41 TAACACAGTATTGGCCTGATCGAGAAACAGCACCAGGGGAT TAACACAGTATTGGCCTGATCGAAAAACAGCACCAGGGGAT < 41bp 0.793772665375464 0.591600748060415 0.874153 0.33529723 prediction 0.404343834630099 Functional Loss - IPO7 ENSG00000205339 CDS Human protein_coding chr11:9430077 chr11:9430080 nonsynonymous SNV 0.986 1 24 hm5C_associated_SNPs_97010 0 0 1 0 1 IPO7 chr11:9430033 3'AG 9430033 Downstream 48bp
chr17 48696283 48696283 1 + G A CESC 48696280 + 48696260 48696300 41 TCTGGCCTGGGGTCGAGGGCCCCGACAGCCCCGACAGCCCC TCTGGCCTGGGGTCGAGGGCCCCAACAGCCCCGACAGCCCC < 41bp 0.715340983011526 0.513174152431485 0.1589013 0.081711024 prediction 0.404333661160081 Functional Loss - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48696280 chr17:48696283 nonsynonymous SNV 0.252 1 24 hm5C_associated_SNPs_97014 0 0 0 0 1 CACNA1G chr17:48696369 5'GT 48696369 Upstream 87bp
chr20 31876668 31876668 1 + C T rs370901362 31876665 + 31876645 31876685 41 GTGCTGGGCAGCCTGGTGAACACCGTCCTGAAGCACATCAT GTGCTGGGCAGCCTGGTGAACACTGTCCTGAAGCACATCAT < 41bp 0.726609259644577 0.524442783858719 0.08731508 0.100194484 prediction 0.404332951571716 Functional Loss - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31876665 chr20:31876668 synonymous SNV . 0 24 hm5C_associated_SNPs_97015 0 0 0 0 1 BPIFB1 chr20:31876688 5'GT 31876688 Upstream 21bp
chr7 57510009 57510009 1 + G T rs185976377 57510007 + 57509987 57510027 41 GCAGATTTATGGCTAAAAGACCGGGACCCCCTGGAAGCCGA GCAGATTTATGGCTAAAAGACCTGGACCCCCTGGAAGCCGA < 41bp 0.70216436954257 0.352543599548152 0.45136812 0.119250715 prediction 0.404328739085139 Functional Loss - ZNF716 ENSG00000182111 CDS Human protein_coding chr7:57510007 chr7:57510009 synonymous SNV . 0 23 hm5C_associated_SNPs_97020 0 0 0 0 1 ZNF716 chr7:57510033 5'GT 57510033 Upstream 25bp
chr7 57510010 57510010 1 + G T LUSC 57510007 + 57509987 57510027 41 GCAGATTTATGGCTAAAAGACCGGGACCCCCTGGAAGCCGA GCAGATTTATGGCTAAAAGACCGTGACCCCCTGGAAGCCGA < 41bp 0.70216436954257 0.322311545042289 0.45136812 0.048952937 prediction 0.404328739085139 Functional Loss - ZNF716 ENSG00000182111 CDS Human protein_coding chr7:57510007 chr7:57510010 stopgain 0.098 0 24 hm5C_associated_SNPs_97021 0 0 0 0 1 ZNF716 chr7:57510033 5'GT 57510033 Upstream 24bp
chr19 6921812 6921812 1 + T C LUSC 6921811 + 6921791 6921831 41 CATCCTTTGGCTGTGTGATCCTGGAAGCTTCTGAGACATAT CATCCTTTGGCTGTGTGATCCCGGAAGCTTCTGAGACATAT < 41bp 0.838595812497861 0.636431851596683 0.3669965 0.5268174 prediction 0.404327921802355 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6921811 chr19:6921812 nonsynonymous SNV 0.002 3 22 hm5C_associated_SNPs_97022 0 0 0 0 2 ADGRE1 chr19:6921724 3'AG 6921724 Downstream 89bp
chr19 6921812 6921812 1 + T C LUSC 6921811 + 6921791 6921831 41 CATCCTTTGGCTGTGTGATCCTGGAAGCTTCTGAGACATAT CATCCTTTGGCTGTGTGATCCCGGAAGCTTCTGAGACATAT < 41bp 0.838595812497861 0.636431851596683 0.3669965 0.5268174 prediction 0.404327921802355 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6921811 chr19:6921812 nonsynonymous SNV 0.002 3 22 hm5C_associated_SNPs_97022 0 0 0 0 2 ADGRE1 chr19:6921894 5'GT 6921894 Upstream 83bp
chr1 241755337 241755337 1 + G A UCEC 241755334 + 241755314 241755354 41 ACTTATACACTACATGTCACCACGATCTTTCCTCCGCTTGA ACTTATACACTACATGTCACCACAATCTTTCCTCCGCTTGA < 41bp 0.702160575895526 0.47192180401568 0.021851093 0.03280899 prediction 0.404321151791052 Functional Loss - KMO ENSG00000117009 CDS Human protein_coding chr1:241755334 chr1:241755337 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_97025 0 0 0 0 1 KMO chr1:241755255 3'AG 241755255 Downstream 83bp
chr15 101592125 101592125 1 + G A LUAD 101592122 + 101592102 101592142 41 CGGACCTCCCCGTGCCGCTGCAGGAGCTGGTCCCTGAACTG CGGACCTCCCCGTGCCGCTGCAGAAGCTGGTCCCTGAACTG < 41bp 0.702157323686959 0.448809072388913 0.8852196 0.5146998 prediction 0.404314647373919 Functional Loss - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101592122 chr15:101592125 nonsynonymous SNV 0.982 2 24 hm5C_associated_SNPs_97029 0 0 0 0 1 LRRK1 chr15:101592165 5'GT 101592165 Upstream 41bp
chr9 80858478 80858478 1 + A C UCEC 80858474 + 80858454 80858494 41 CTGGCTTAAGACGTATCACACTGAATTGCAACACACTTATT CTGGCTTAAGACGTATCACACTGACTTGCAACACACTTATT < 41bp 0.702154135014441 0.283521293687123 0.26939416 0.3668188 prediction 0.404308270028882 Functional Loss - CEP78 ENSG00000148019 CDS Human protein_coding chr9:80858474 chr9:80858478 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_97030 0 0 0 0 1 CEP78 chr9:80858552 5'GT 80858552 Upstream 75bp
chr12 3129870 3129870 1 + C T UCEC 3129867 + 3129847 3129887 41 GCACCCCCATGGCAGGGCCGCAGCGTGGCCAGCTCCAAGCT GCACCCCCATGGCAGGGCCGCAGTGTGGCCAGCTCCAAGCT < 41bp 0.714715445655617 0.512566742140792 0.65534973 0.34971374 prediction 0.404297407029649 Functional Loss - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3129867 chr12:3129870 synonymous SNV . 0 24 hm5C_associated_SNPs_97032 0 0 1 0 1 TEAD4 chr12:3129939 5'GT 3129939 Upstream 70bp
chr22 31063641 31063641 1 + T C rs79182040 31063640 + 31063620 31063660 41 GCCGGGTCTTCAGAGAAATCCTGGCCTCGGCTCCACGCCCC GCCGGGTCTTCAGAGAAATCCCGGCCTCGGCTCCACGCCCC < 41bp 0.712915759331344 0.510769250669967 0.89769787 0.8974829 prediction 0.404293017322753 Functional Loss - DUSP18;SLC35E4 ENSG00000167065;ENSG00000100036 UTR5;UTR3 Human other chr22:31063640 chr22:31063641 . . 0 22 hm5C_associated_SNPs_97037 0 0 0 0 1 DUSP18;SLC35E4 chr22:31063588 3'AG 31063588 Downstream 54bp
chr17 4381930 4381930 1 + C T COAD 4381927 + 4381907 4381947 41 GGGCAGTGGTTGCCGACATCCTGCTGGTAGGTGTGGGAGTC GGGCAGTGGTTGCCGACATCCTGTTGGTAGGTGTGGGAGTC < 41bp 0.713178746033536 0.511035185535675 0.10623786 0.08451265 prediction 0.404287120995722 Functional Loss - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4381927 chr17:4381930 synonymous SNV . 0 24 hm5C_associated_SNPs_97038 0 0 0 0 2 SPNS3 chr17:4381867 3'AG 4381867 Downstream 64bp
chr17 4381930 4381930 1 + C T COAD 4381927 + 4381907 4381947 41 GGGCAGTGGTTGCCGACATCCTGCTGGTAGGTGTGGGAGTC GGGCAGTGGTTGCCGACATCCTGTTGGTAGGTGTGGGAGTC < 41bp 0.713178746033536 0.511035185535675 0.10623786 0.08451265 prediction 0.404287120995722 Functional Loss - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4381927 chr17:4381930 synonymous SNV . 0 24 hm5C_associated_SNPs_97038 0 0 0 0 2 SPNS3 chr17:4381932 5'GT 4381932 Upstream 3bp
chr3 16250027 16250027 1 + C T SKCM 16250024 + 16250004 16250044 41 TTCCAGGAGCCGAGTGGTATCTCCGGTGATAGATGTGATTG TTCCAGGAGCCGAGTGGTATCTCTGGTGATAGATGTGATTG < 41bp 0.702140774692429 0.474252899592469 0.32634953 0.12855163 prediction 0.404281549384857 Functional Loss - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16250024 chr3:16250027 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_97040 0 0 0 0 1 GALNT15 chr3:16250010 3'AG 16250010 Downstream 18bp
chr17 8219149 8219149 1 + G A STAD 8219146 + 8219126 8219166 41 TGTGTGATGTGGTGCATGCCCACGCTGTGGGGCCTTTCTCG TGTGTGATGTGGTGCATGCCCACACTGTGGGGCCTTTCTCG < 41bp 0.702138297158986 0.435703445615059 0.3809244 0.2627421 prediction 0.404276594317973 Functional Loss - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8219146 chr17:8219149 nonsynonymous SNV 0.028 3 24 hm5C_associated_SNPs_97041 0 0 0 0 2 ARHGEF15 chr17:8219073 3'AG 8219073 Downstream 77bp
chr17 8219149 8219149 1 + G A STAD 8219146 + 8219126 8219166 41 TGTGTGATGTGGTGCATGCCCACGCTGTGGGGCCTTTCTCG TGTGTGATGTGGTGCATGCCCACACTGTGGGGCCTTTCTCG < 41bp 0.702138297158986 0.435703445615059 0.3809244 0.2627421 prediction 0.404276594317973 Functional Loss - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8219146 chr17:8219149 nonsynonymous SNV 0.028 3 24 hm5C_associated_SNPs_97041 0 0 0 0 2 ARHGEF15 chr17:8219225 5'GT 8219225 Upstream 77bp
chr8 91937823 91937823 1 + C T HNSC 91937821 + 91937801 91937841 41 GGCCTGGAAAACGATCAAGCCGCCGAGTCCAGAGACACAAC GGCCTGGAAAACGATCAAGCCGTCGAGTCCAGAGACACAAC < 41bp 0.702136960686163 0.403848851100221 0.22997859 0.15202725 prediction 0.404273921372327 Functional Loss - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91937821 chr8:91937823 synonymous SNV . 0 23 hm5C_associated_SNPs_97043 0 0 0 0 2 NECAB1 chr8:91937763 3'AG 91937763 Downstream 61bp
chr8 91937823 91937823 1 + C T HNSC 91937821 + 91937801 91937841 41 GGCCTGGAAAACGATCAAGCCGCCGAGTCCAGAGACACAAC GGCCTGGAAAACGATCAAGCCGTCGAGTCCAGAGACACAAC < 41bp 0.702136960686163 0.403848851100221 0.22997859 0.15202725 prediction 0.404273921372327 Functional Loss - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91937821 chr8:91937823 synonymous SNV . 0 23 hm5C_associated_SNPs_97043 0 0 0 0 2 NECAB1 chr8:91937884 5'GT 91937884 Upstream 62bp
chr8 91937824 91937824 1 + C T SKCM 91937821 + 91937801 91937841 41 GGCCTGGAAAACGATCAAGCCGCCGAGTCCAGAGACACAAC GGCCTGGAAAACGATCAAGCCGCTGAGTCCAGAGACACAAC < 41bp 0.702136960686163 0.470913569555566 0.22997859 0.15306208 prediction 0.404273921372327 Functional Loss - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91937821 chr8:91937824 stopgain 0.998 1 24 hm5C_associated_SNPs_97044 0 0 0 0 2 NECAB1 chr8:91937763 3'AG 91937763 Downstream 62bp
chr8 91937824 91937824 1 + C T SKCM 91937821 + 91937801 91937841 41 GGCCTGGAAAACGATCAAGCCGCCGAGTCCAGAGACACAAC GGCCTGGAAAACGATCAAGCCGCTGAGTCCAGAGACACAAC < 41bp 0.702136960686163 0.470913569555566 0.22997859 0.15306208 prediction 0.404273921372327 Functional Loss - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91937821 chr8:91937824 stopgain 0.998 1 24 hm5C_associated_SNPs_97044 0 0 0 0 2 NECAB1 chr8:91937884 5'GT 91937884 Upstream 61bp
chr11 63176338 63176338 1 + G A SKCM 63176335 + 63176315 63176355 41 AGCCTCTGTTTGACACCATCCAGGATGAGAAAAATGAGTGA AGCCTCTGTTTGACACCATCCAGAATGAGAAAAATGAGTGA < 41bp 0.807447078003443 0.60531104281689 0.22279644 0.052813888 prediction 0.404272070373105 Functional Loss - SLC22A9 ENSG00000149742 CDS Human protein_coding chr11:63176335 chr11:63176338 nonsynonymous SNV 0.021 3 24 hm5C_associated_SNPs_97046 0 0 0 0 1 SLC22A9 chr11:63176351 5'GT 63176351 Upstream 14bp
chr3 14798948 14798948 1 + C T CESC 14798945 + 14798925 14798965 41 CCTCAGACTGCCCGCTGGTGCTGCGGAAGCTCATGCTCAAG CCTCAGACTGCCCGCTGGTGCTGTGGAAGCTCATGCTCAAG < 41bp 0.758743808231342 0.556608408817485 0.39568722 0.33462018 prediction 0.404270798827715 Functional Loss - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14798945 chr3:14798948 nonsynonymous SNV 0.960 4 24 hm5C_associated_SNPs_97047 0 0 0 0 1 C3orf20 chr3:14798878 3'AG 14798878 Downstream 71bp
chr2 36668550 36668550 1 + C T STAD 36668547 + 36668527 36668567 41 TGTGCAACCCCGCAGGCTGTCTGCGCAAAGTCTGCCAGCCG TGTGCAACCCCGCAGGCTGTCTGTGCAAAGTCTGCCAGCCG < 41bp 0.778355349823246 0.576221892604776 0.21880311 0.18233877 prediction 0.40426691443694 Functional Loss - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36668547 chr2:36668550 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_97049 0 0 1 0 1 CRIM1 chr2:36668643 5'GT 36668643 Upstream 94bp
chr17 9586193 9586193 1 + C T UCEC 9586190 + 9586170 9586210 41 GCCTGGCAGCCCGTGAGGGCCAGCGATTCTCCCTCTCTCTC GCCTGGCAGCCCGTGAGGGCCAGTGATTCTCCCTCTCTCTC < 41bp 0.71604737266781 0.513915670169984 0.9027705 0.89114624 prediction 0.404263404995653 Functional Loss - USP43 ENSG00000154914 CDS Human protein_coding chr17:9586190 chr17:9586193 stopgain 0.288 0 24 hm5C_associated_SNPs_97052 0 0 0 0 2 USP43 chr17:9586140 3'AG 9586140 Downstream 54bp
chr17 9586193 9586193 1 + C T UCEC 9586190 + 9586170 9586210 41 GCCTGGCAGCCCGTGAGGGCCAGCGATTCTCCCTCTCTCTC GCCTGGCAGCCCGTGAGGGCCAGTGATTCTCCCTCTCTCTC < 41bp 0.71604737266781 0.513915670169984 0.9027705 0.89114624 prediction 0.404263404995653 Functional Loss - USP43 ENSG00000154914 CDS Human protein_coding chr17:9586190 chr17:9586193 stopgain 0.288 0 24 hm5C_associated_SNPs_97052 0 0 0 0 2 USP43 chr17:9586275 5'GT 9586275 Upstream 83bp
chr2 190526281 190526281 1 + C T rs74593114 190526279 + 190526259 190526299 41 GGGACGCGACCAGAGGACAGCTCTGTGCTGATCCCCACCGA GGGACGCGACCAGAGGACAGCTTTGTGCTGATCCCCACCGA < 41bp 0.702130549724943 0.492996476484161 0.31268996 0.20918167 prediction 0.404261099449885 Functional Loss - ASNSD1 ENSG00000138381 CDS Human protein_coding chr2:190526279 chr2:190526281 nonsynonymous SNV 0.011 0 23 hm5C_associated_SNPs_97053 0 0 1 0 1 ASNSD1 chr2:190526336 5'GT 190526336 Upstream 56bp
chr5 159491991 159491991 1 + G A UCEC 159491988 + 159491968 159492008 41 CTCCGACCTTTTGGGCTCTCCACGGAAAATTTCCAGATCAA CTCCGACCTTTTGGGCTCTCCACAGAAAATTTCCAGATCAA < 41bp 0.785982980356782 0.58385417857136 0.5556938 0.18517116 prediction 0.404257603570844 Functional Loss - TTC1 ENSG00000113312 CDS Human protein_coding chr5:159491988 chr5:159491991 synonymous SNV . 0 24 hm5C_associated_SNPs_97054 0 0 1 0 1 TTC1 chr5:159491939 3'AG 159491939 Downstream 53bp
chr1 66064395 66064395 1 + G A HNSC 66064392 + 66064372 66064412 41 GCTAGTAGACAGTATACTTCCTGGGTCTTCGTATGAGGTTC GCTAGTAGACAGTATACTTCCTGAGTCTTCGTATGAGGTTC < 41bp 0.808309818625949 0.606181132336522 0.21469897 0.06117049 prediction 0.404257372578854 Functional Loss - LEPR ENSG00000116678 CDS Human protein_coding chr1:66064392 chr1:66064395 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_97055 0 0 1 0 2 LEPR chr1:66064343 3'AG 66064343 Downstream 53bp
chr1 66064395 66064395 1 + G A HNSC 66064392 + 66064372 66064412 41 GCTAGTAGACAGTATACTTCCTGGGTCTTCGTATGAGGTTC GCTAGTAGACAGTATACTTCCTGAGTCTTCGTATGAGGTTC < 41bp 0.808309818625949 0.606181132336522 0.21469897 0.06117049 prediction 0.404257372578854 Functional Loss - LEPR ENSG00000116678 CDS Human protein_coding chr1:66064392 chr1:66064395 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_97055 0 0 1 0 2 LEPR chr1:66064487 5'GT 66064487 Upstream 93bp
chr8 36780088 36780088 1 + A T LUSC 36780084 + 36780064 36780104 41 CAAGAAACAAATCTGCATCTCAGCACTGCCTTTTCTACGGG CAAGAAACAAATCTGCATCTCAGCTCTGCCTTTTCTACGGG < 41bp 0.702128036978056 0.356967922613492 0.3070806 0.2040197 prediction 0.404256073956113 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36780084 chr8:36780088 nonsynonymous SNV 0.880 1 25 hm5C_associated_SNPs_97056 0 0 0 4 2 KCNU1 chr8:36780008 3'AG 36780008 Downstream 81bp
chr8 36780088 36780088 1 + A T LUSC 36780084 + 36780064 36780104 41 CAAGAAACAAATCTGCATCTCAGCACTGCCTTTTCTACGGG CAAGAAACAAATCTGCATCTCAGCTCTGCCTTTTCTACGGG < 41bp 0.702128036978056 0.356967922613492 0.3070806 0.2040197 prediction 0.404256073956113 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36780084 chr8:36780088 nonsynonymous SNV 0.880 1 25 hm5C_associated_SNPs_97056 0 0 0 4 2 KCNU1 chr8:36780147 5'GT 36780147 Upstream 60bp
chr2 32865408 32865408 1 + G A UCEC 32865405 + 32865385 32865425 41 GAATCAATCTACAGCCTGACCTCGAAGCCTATACTACTGTT GAATCAATCTACAGCCTGACCTCAAAGCCTATACTACTGTT < 41bp 0.808513710940968 0.6063862948616 0.87860924 0.19286525 prediction 0.404254832158736 Functional Loss - TTC27 ENSG00000018699 CDS Human protein_coding chr2:32865405 chr2:32865408 synonymous SNV . 0 24 hm5C_associated_SNPs_97057 0 0 1 0 2 TTC27 chr2:32865337 3'AG 32865337 Downstream 72bp
chr2 32865408 32865408 1 + G A UCEC 32865405 + 32865385 32865425 41 GAATCAATCTACAGCCTGACCTCGAAGCCTATACTACTGTT GAATCAATCTACAGCCTGACCTCAAAGCCTATACTACTGTT < 41bp 0.808513710940968 0.6063862948616 0.87860924 0.19286525 prediction 0.404254832158736 Functional Loss - TTC27 ENSG00000018699 CDS Human protein_coding chr2:32865405 chr2:32865408 synonymous SNV . 0 24 hm5C_associated_SNPs_97057 0 0 1 0 2 TTC27 chr2:32865477 5'GT 32865477 Upstream 70bp
chr3 128525253 128525253 1 + C T rs4548 128525251 + 128525231 128525271 41 GACAGGAACGGTTCCAGTCTCTCGGTGTGGCCTTCTACAGA GACAGGAACGGTTCCAGTCTCTTGGTGTGGCCTTCTACAGA < 41bp 0.881332703561069 0.679205459268105 0.12242216 0.10944283 prediction 0.404254488585928 Functional Loss - RAB7A ENSG00000075785 CDS Human protein_coding chr3:128525251 chr3:128525253 synonymous SNV . 0 23 hm5C_associated_SNPs_97058 2 0 1 0 2 RAB7A chr3:128525215 3'AG 128525215 Downstream 39bp
chr3 128525253 128525253 1 + C T rs4548 128525251 + 128525231 128525271 41 GACAGGAACGGTTCCAGTCTCTCGGTGTGGCCTTCTACAGA GACAGGAACGGTTCCAGTCTCTTGGTGTGGCCTTCTACAGA < 41bp 0.881332703561069 0.679205459268105 0.12242216 0.10944283 prediction 0.404254488585928 Functional Loss - RAB7A ENSG00000075785 CDS Human protein_coding chr3:128525251 chr3:128525253 synonymous SNV . 0 23 hm5C_associated_SNPs_97058 2 0 1 0 2 RAB7A chr3:128525292 5'GT 128525292 Upstream 40bp
chr1 109271303 109271303 1 + G A SKCM 109271300 + 109271280 109271320 41 GTTTCAAGGGATGCATTCTCCATGATTAATGTGCACTGGCG GTTTCAAGGGATGCATTCTCCATAATTAATGTGCACTGGCG < 41bp 0.702127087942343 0.464536792875315 0.042600304 0.012664616 prediction 0.404254175884686 Functional Loss - FNDC7 ENSG00000143107 CDS Human protein_coding chr1:109271300 chr1:109271303 nonsynonymous SNV 0.167 0 24 hm5C_associated_SNPs_97059 0 0 0 0 1 FNDC7 chr1:109271254 3'AG 109271254 Downstream 50bp
chr15 66607413 66607413 1 + G A STAD 66607410 + 66607390 66607430 41 CCTAATCCACGGGATGAAGGCTCGAAACCGCTCAATTCATG CCTAATCCACGGGATGAAGGCTCAAAACCGCTCAATTCATG < 41bp 0.798964134194475 0.596838327484351 0.19977146 0.12420246 prediction 0.404251613420248 Functional Loss - DIS3L ENSG00000166938 CDS Human protein_coding chr15:66607410 chr15:66607413 nonsynonymous SNV 0.953 1 24 hm5C_associated_SNPs_97062 0 0 1 0 1 DIS3L chr15:66607374 3'AG 66607374 Downstream 40bp
chr11 1477639 1477639 1 + C T LGG 1477637 + 1477617 1477657 41 TTCCGGGCCGAGTACAAGGCCACGGGGGGGCCAGCCGTGTT TTCCGGGCCGAGTACAAGGCCATGGGGGGGCCAGCCGTGTT < 41bp 0.702121481051928 0.444467004449295 0.4146659 0.72005934 prediction 0.404242962103857 Functional Loss - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1477637 chr11:1477639 nonsynonymous SNV 0.068 2 23 hm5C_associated_SNPs_97065 0 0 1 0 1 BRSK2 chr11:1477578 3'AG 1477578 Downstream 62bp
chr1 245704175 245704175 1 + C T UCEC 245704172 + 245704152 245704192 41 CAACCAGCTTCAGTGGGATTCTGCAGACCTCCCCTCCCCCA CAACCAGCTTCAGTGGGATTCTGTAGACCTCCCCTCCCCCA < 41bp 0.713630551286622 0.51151184193621 0.8312199 0.55374104 prediction 0.404237418700823 Functional Loss - KIF26B ENSG00000162849 CDS Human protein_coding chr1:245704172 chr1:245704175 stopgain 0.778 0 24 hm5C_associated_SNPs_97066 0 0 0 0 1 KIF26B chr1:245704252 5'GT 245704252 Upstream 78bp
chr3 149613346 149613346 1 + C T GBM 149613343 + 149613323 149613363 41 CTCATTAGCATGGGATCCAACGACAGTAAGTACAGGTATCA CTCATTAGCATGGGATCCAACGATAGTAAGTACAGGTATCA < 41bp 0.702117582623838 0.481356976843984 0.23779643 0.25606298 prediction 0.404235165247675 Functional Loss - RNF13 ENSG00000082996 CDS Human protein_coding chr3:149613343 chr3:149613346 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_97070 0 0 1 0 3 RNF13 chr3:149613260 3'AG 149613260 Downstream 87bp
chr3 149613346 149613346 1 + C T GBM 149613343 + 149613323 149613363 41 CTCATTAGCATGGGATCCAACGACAGTAAGTACAGGTATCA CTCATTAGCATGGGATCCAACGATAGTAAGTACAGGTATCA < 41bp 0.702117582623838 0.481356976843984 0.23779643 0.25606298 prediction 0.404235165247675 Functional Loss - RNF13 ENSG00000082996 CDS Human protein_coding chr3:149613343 chr3:149613346 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_97070 0 0 1 0 3 RNF13 chr3:149613347 5'GT 149613347 Upstream 2bp
chr3 149613346 149613346 1 + C T GBM 149613343 + 149613323 149613363 41 CTCATTAGCATGGGATCCAACGACAGTAAGTACAGGTATCA CTCATTAGCATGGGATCCAACGATAGTAAGTACAGGTATCA < 41bp 0.702117582623838 0.481356976843984 0.23779643 0.25606298 prediction 0.404235165247675 Functional Loss - RNF13 ENSG00000082996 CDS Human protein_coding chr3:149613343 chr3:149613346 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_97070 0 0 1 0 3 RNF13 chr3:149613357 5'GT 149613357 Upstream 12bp
chr5 77712443 77712443 1 + G A SKCM 77712440 + 77712420 77712460 41 AAGCCGCAGAATTAGATCGTCGGGAACGAGAAATGCAAAAC AAGCCGCAGAATTAGATCGTCGGAAACGAGAAATGCAAAAC < 41bp 0.744777993796512 0.542662725436979 0.87459224 0.7534057 prediction 0.404230536719067 Functional Loss - SCAMP1 ENSG00000085365 CDS Human protein_coding chr5:77712440 chr5:77712443 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_97072 0 0 1 0 2 SCAMP1 chr5:77712365 3'AG 77712365 Downstream 79bp
chr5 77712443 77712443 1 + G A SKCM 77712440 + 77712420 77712460 41 AAGCCGCAGAATTAGATCGTCGGGAACGAGAAATGCAAAAC AAGCCGCAGAATTAGATCGTCGGAAACGAGAAATGCAAAAC < 41bp 0.744777993796512 0.542662725436979 0.87459224 0.7534057 prediction 0.404230536719067 Functional Loss - SCAMP1 ENSG00000085365 CDS Human protein_coding chr5:77712440 chr5:77712443 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_97072 0 0 1 0 2 SCAMP1 chr5:77712473 5'GT 77712473 Upstream 31bp
chr12 71977666 71977666 1 + C T STAD 71977664 + 71977644 71977684 41 GTTCACTTTTGGCAGCTTTGCACGACATGGTGCCTGGTGGG GTTCACTTTTGGCAGCTTTGCATGACATGGTGCCTGGTGGG < 41bp 0.867702826418982 0.665589688675423 0.23376337 0.23640442 prediction 0.404226275487116 Functional Loss - LGR5 ENSG00000139292 CDS Human protein_coding chr12:71977664 chr12:71977666 stopgain 0.048 0 23 hm5C_associated_SNPs_97073 0 0 1 0 1 LGR5 chr12:71977692 5'GT 71977692 Upstream 27bp
chr8 19811791 19811791 1 + G A STAD 19811788 + 19811768 19811808 41 GTTGGGCATGTTGACATTTACCCGAATGGAGGTACTTTTCA GTTGGGCATGTTGACATTTACCCAAATGGAGGTACTTTTCA < 41bp 0.815009785765479 0.612901459746917 0.2698604 0.15531766 prediction 0.404216652037125 Functional Loss - LPL ENSG00000175445 CDS Human protein_coding chr8:19811788 chr8:19811791 synonymous SNV . 0 24 hm5C_associated_SNPs_97076 0 0 0 0 1 LPL chr8:19811864 5'GT 19811864 Upstream 74bp
chr19 50093248 50093248 1 + A C rs144521999 50093247 + 50093227 50093267 41 CCCCCACCCCCAGGCCTCCCCACCTATGAGCAGGCGCTGGC CCCCCACCCCCAGGCCTCCCCCCCTATGAGCAGGCGCTGGC < 41bp 0.702104885458995 0.438775016201509 0.062470734 0.031007886 prediction 0.404209770917989 Functional Loss - PRRG2 ENSG00000126460 CDS Human protein_coding chr19:50093247 chr19:50093248 nonsynonymous SNV 0.995 5 22 hm5C_associated_SNPs_97081 0 0 0 0 2 PRRG2 chr19:50093157 3'AG 50093157 Downstream 92bp
chr19 50093248 50093248 1 + A C rs144521999 50093247 + 50093227 50093267 41 CCCCCACCCCCAGGCCTCCCCACCTATGAGCAGGCGCTGGC CCCCCACCCCCAGGCCTCCCCCCCTATGAGCAGGCGCTGGC < 41bp 0.702104885458995 0.438775016201509 0.062470734 0.031007886 prediction 0.404209770917989 Functional Loss - PRRG2 ENSG00000126460 CDS Human protein_coding chr19:50093247 chr19:50093248 nonsynonymous SNV 0.995 5 22 hm5C_associated_SNPs_97081 0 0 0 0 2 PRRG2 chr19:50093309 5'GT 50093309 Upstream 62bp
chr19 50093249 50093249 1 + C T ESCA 50093247 + 50093227 50093267 41 CCCCCACCCCCAGGCCTCCCCACCTATGAGCAGGCGCTGGC CCCCCACCCCCAGGCCTCCCCATCTATGAGCAGGCGCTGGC < 41bp 0.702104885458995 0.439445030958429 0.062470734 0.068166345 prediction 0.404209770917989 Functional Loss - PRRG2 ENSG00000126460 CDS Human protein_coding chr19:50093247 chr19:50093249 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_97082 0 0 0 0 2 PRRG2 chr19:50093157 3'AG 50093157 Downstream 93bp
chr19 50093249 50093249 1 + C T ESCA 50093247 + 50093227 50093267 41 CCCCCACCCCCAGGCCTCCCCACCTATGAGCAGGCGCTGGC CCCCCACCCCCAGGCCTCCCCATCTATGAGCAGGCGCTGGC < 41bp 0.702104885458995 0.439445030958429 0.062470734 0.068166345 prediction 0.404209770917989 Functional Loss - PRRG2 ENSG00000126460 CDS Human protein_coding chr19:50093247 chr19:50093249 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_97082 0 0 0 0 2 PRRG2 chr19:50093309 5'GT 50093309 Upstream 61bp
chr3 183955039 183955039 1 + T C UCEC 183955038 + 183955018 183955058 41 TACAGGCTCTGCGGAAGGCACTGGAGCCTGCTTTGAGTGAC TACAGGCTCTGCGGAAGGCACCGGAGCCTGCTTTGAGTGAC < 41bp 0.842445199238753 0.640343132576038 0.65362954 0.8087424 prediction 0.404204133325431 Functional Loss - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183955038 chr3:183955039 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_97084 0 0 0 0 1 VWA5B2 chr3:183955014 3'AG 183955014 Downstream 26bp
chr20 56139562 56139562 1 + C T BLCA 56139560 + 56139540 56139580 41 GAACCTTGTGCCCACCCCAACTCGAGGTTCTGCACCCCTGC GAACCTTGTGCCCACCCCAACTTGAGGTTCTGCACCCCTGC < 41bp 0.882258016657676 0.680156226102718 0.9062958 0.79231536 prediction 0.404203581109915 Functional Loss - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56139560 chr20:56139562 nonsynonymous SNV 0.807 4 23 hm5C_associated_SNPs_97085 0 0 1 0 1 PCK1 chr20:56139538 3'AG 56139538 Downstream 25bp
chr2 179402367 179402367 1 + G A ESCA 179402364 + 179402344 179402384 41 TGGAACTGCGGTGTTGCTTGCAGGAGAAGCTTACTACTGGT TGGAACTGCGGTGTTGCTTGCAGAAGAAGCTTACTACTGGT < 41bp 0.764946052939851 0.562846112412667 0.9420937 0.7890455 prediction 0.404199881054369 Functional Loss - TTN ENSG00000155657 CDS Human protein_coding chr2:179402364 chr2:179402367 synonymous SNV . 0 24 hm5C_associated_SNPs_97087 7 0 1 0 1 TTN chr2:179402418 5'GT 179402418 Upstream 52bp
chr11 60637894 60637894 1 + G T SARC 60637891 + 60637871 60637911 41 CTTCAAAAGAAGCCTGTCAGCAGGCTGGCTGCTGCTATGAC CTTCAAAAGAAGCCTGTCAGCAGTCTGGCTGCTGCTATGAC < 41bp 0.702099148284977 0.286298379697371 0.4177657 0.19858477 prediction 0.404198296569953 Functional Loss - ZP1 ENSG00000149506 CDS Human protein_coding chr11:60637891 chr11:60637894 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_97088 0 0 0 0 2 ZP1 chr11:60637805 3'AG 60637805 Downstream 90bp
chr11 60637894 60637894 1 + G T SARC 60637891 + 60637871 60637911 41 CTTCAAAAGAAGCCTGTCAGCAGGCTGGCTGCTGCTATGAC CTTCAAAAGAAGCCTGTCAGCAGTCTGGCTGCTGCTATGAC < 41bp 0.702099148284977 0.286298379697371 0.4177657 0.19858477 prediction 0.404198296569953 Functional Loss - ZP1 ENSG00000149506 CDS Human protein_coding chr11:60637891 chr11:60637894 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_97088 0 0 0 0 2 ZP1 chr11:60637948 5'GT 60637948 Upstream 55bp
chr12 7061302 7061302 1 + C T PAAD 7061300 + 7061280 7061320 41 GCGACGGCACCATCATCCACCTCAAGTACCCGCTGAACTGC GCGACGGCACCATCATCCACCTTAAGTACCCGCTGAACTGC < 41bp 0.702097888548888 0.41186730394318 0.103072345 0.055245847 prediction 0.404195777097777 Functional Loss - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7061300 chr12:7061302 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_97089 0 0 1 0 1 PTPN6 chr12:7061340 5'GT 7061340 Upstream 39bp
chr21 47544834 47544834 1 + G A CESC 47544831 + 47544811 47544851 41 CCCCCTGGAGACCCCGGTCTCACGGTAGGTGTCACATGGGG CCCCCTGGAGACCCCGGTCTCACAGTAGGTGTCACATGGGG < 41bp 0.824161198276076 0.622063843760347 0.73858577 0.44206434 prediction 0.404194709031458 Functional Loss - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47544831 chr21:47544834 synonymous SNV . 0 24 hm5C_associated_SNPs_97090 0 0 0 0 1 COL6A2 chr21:47544834 5'GT 47544834 Upstream 1bp
chrX 153537746 153537746 1 + G T SARC 153537742 + 153537722 153537762 41 CAGGATGGCTCGGACAAGGACTGGGAGTTGCATGTGGAATG CAGGATGGCTCGGACAAGGACTGGTAGTTGCATGTGGAATG < 41bp 0.736390855968654 0.534296456880862 0.17124966 0.056249946 prediction 0.404188798175584 Functional Loss - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153537742 chrX:153537746 nonsynonymous SNV 0.636 4 25 hm5C_associated_SNPs_97092 0 0 0 0 2 TKTL1 chrX:153537697 3'AG 153537697 Downstream 50bp
chrX 153537746 153537746 1 + G T SARC 153537742 + 153537722 153537762 41 CAGGATGGCTCGGACAAGGACTGGGAGTTGCATGTGGAATG CAGGATGGCTCGGACAAGGACTGGTAGTTGCATGTGGAATG < 41bp 0.736390855968654 0.534296456880862 0.17124966 0.056249946 prediction 0.404188798175584 Functional Loss - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153537742 chrX:153537746 nonsynonymous SNV 0.636 4 25 hm5C_associated_SNPs_97092 0 0 0 0 2 TKTL1 chrX:153537794 5'GT 153537794 Upstream 49bp
chr5 132084048 132084048 1 + T C BRCA 132084047 + 132084027 132084067 41 TCTTCCTAGCAGGATGAAATCTGCGACGCCTTCGAGGAAGT TCTTCCTAGCAGGATGAAATCCGCGACGCCTTCGAGGAAGT < 41bp 0.825846768338452 0.623756345299874 0.32037398 0.41018063 prediction 0.404180846077156 Functional Loss - CCNI2 ENSG00000205089 CDS Human protein_coding chr5:132084047 chr5:132084048 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_97094 0 0 0 0 2 CCNI2 chr5:132084036 3'AG 132084036 Downstream 13bp
chr5 132084048 132084048 1 + T C BRCA 132084047 + 132084027 132084067 41 TCTTCCTAGCAGGATGAAATCTGCGACGCCTTCGAGGAAGT TCTTCCTAGCAGGATGAAATCCGCGACGCCTTCGAGGAAGT < 41bp 0.825846768338452 0.623756345299874 0.32037398 0.41018063 prediction 0.404180846077156 Functional Loss - CCNI2 ENSG00000205089 CDS Human protein_coding chr5:132084047 chr5:132084048 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_97094 0 0 0 0 2 CCNI2 chr5:132084039 3'AG 132084039 Downstream 10bp
chr17 47210165 47210165 1 + G T SARC 47210162 + 47210142 47210182 41 GGCGGGATTCGGGATGACTTCGGGCGGGTGAGTGTCCCCGG GGCGGGATTCGGGATGACTTCGGTCGGGTGAGTGTCCCCGG < 41bp 0.937519623780278 0.735431090960522 0.9251183 0.85034907 prediction 0.404177065639512 Functional Loss - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47210162 chr17:47210165 nonsynonymous SNV 0.147 0 24 hm5C_associated_SNPs_97096 0 0 0 0 1 B4GALNT2 chr17:47210168 5'GT 47210168 Upstream 4bp
chr12 121434172 121434172 1 + G T LUAD 121434168 + 121434148 121434188 41 CCCCTCCACCAAGTGTCCCCCACGGGCCTGGAGCCCAGCCA CCCCTCCACCAAGTGTCCCCCACGTGCCTGGAGCCCAGCCA < 41bp 0.72312164446887 0.521035160281751 0.23930895 0.15678024 prediction 0.404172968374237 Functional Loss - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121434168 chr12:121434172 nonsynonymous SNV 0.963 2 25 hm5C_associated_SNPs_97097 0 0 1 0 1 HNF1A chr12:121434216 5'GT 121434216 Upstream 45bp
chr1 236902770 236902770 1 + C T PRAD 236902767 + 236902747 236902787 41 TGGAGATCAACTTCAACACGCTGCAGACCAAGCTGCGGATC TGGAGATCAACTTCAACACGCTGTAGACCAAGCTGCGGATC < 41bp 0.762640295129762 0.560555399529623 0.2890845 0.16902551 prediction 0.404169791200278 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236902767 chr1:236902770 stopgain 1.000 1 24 hm5C_associated_SNPs_97099 0 0 0 0 1 ACTN2 chr1:236902832 5'GT 236902832 Upstream 63bp
chr13 37582892 37582892 1 + G A UCEC 37582889 + 37582869 37582909 41 TTTGCTTATAGTTGACCCTACTGGAGAGGAGGAACATCTGG TTTGCTTATAGTTGACCCTACTGAAGAGGAGGAACATCTGG < 41bp 0.7750287147873 0.572945257280643 0.16401842 0.10560778 prediction 0.404166915013314 Functional Loss - EXOSC8 ENSG00000120699 CDS Human protein_coding chr13:37582889 chr13:37582892 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_97100 0 0 1 2 1 EXOSC8 chr13:37582866 3'AG 37582866 Downstream 27bp
chr10 13231045 13231045 1 + C T UCEC 13231042 + 13231022 13231062 41 CTGTGCCAAGATGGCTTTTACTACGGAGGGGTTTCTTCTGC CTGTGCCAAGATGGCTTTTACTATGGAGGGGTTTCTTCTGC < 41bp 0.7805330531253 0.578450333663897 0.31802326 0.29261607 prediction 0.404165438922805 Functional Loss - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13231042 chr10:13231045 synonymous SNV . 0 24 hm5C_associated_SNPs_97102 0 0 1 0 1 MCM10 chr10:13231080 5'GT 13231080 Upstream 36bp
chr15 42127259 42127259 1 + G T CESC 42127257 + 42127237 42127277 41 GGATCGCTTCATGATGCCAGCTGAGCGCCGCCTGCCCCTGA GGATCGCTTCATGATGCCAGCTTAGCGCCGCCTGCCCCTGA < 41bp 0.702081612361311 0.34021779581634 0.22787967 0.03745514 prediction 0.404163224722622 Functional Loss - JMJD7;JMJD7-PLA2G4B ENSG00000168970;ENSG00000243708;ENSG00000243789 CDS Human other chr15:42127257 chr15:42127259 stopgain 0.979 1 23 hm5C_associated_SNPs_97104 0 0 1 0 2 JMJD7;JMJD7-PLA2G4B chr15:42127168 3'AG 42127168 Downstream 92bp
chr15 42127259 42127259 1 + G T CESC 42127257 + 42127237 42127277 41 GGATCGCTTCATGATGCCAGCTGAGCGCCGCCTGCCCCTGA GGATCGCTTCATGATGCCAGCTTAGCGCCGCCTGCCCCTGA < 41bp 0.702081612361311 0.34021779581634 0.22787967 0.03745514 prediction 0.404163224722622 Functional Loss - JMJD7;JMJD7-PLA2G4B ENSG00000168970;ENSG00000243708;ENSG00000243789 CDS Human other chr15:42127257 chr15:42127259 stopgain 0.979 1 23 hm5C_associated_SNPs_97104 0 0 1 0 2 JMJD7;JMJD7-PLA2G4B chr15:42127176 3'AG 42127176 Downstream 84bp
chr2 55462059 55462059 1 + G A HNSC 55462056 + 55462036 55462076 41 ACTCCCAAGAAGAATAAGCACAAGAGAAAGAAGGTTAAGCT ACTCCCAAGAAGAATAAGCACAAAAGAAAGAAGGTTAAGCT < 41bp 0.763890166369464 0.561808981560078 0.8377562 0.29265118 prediction 0.404162369618772 Functional Loss - RPS27A ENSG00000143947 CDS Human protein_coding chr2:55462056 chr2:55462059 synonymous SNV . 0 24 hm5C_associated_SNPs_97105 0 0 1 0 2 RPS27A chr2:55461967 3'AG 55461967 Downstream 93bp
chr2 55462059 55462059 1 + G A HNSC 55462056 + 55462036 55462076 41 ACTCCCAAGAAGAATAAGCACAAGAGAAAGAAGGTTAAGCT ACTCCCAAGAAGAATAAGCACAAAAGAAAGAAGGTTAAGCT < 41bp 0.763890166369464 0.561808981560078 0.8377562 0.29265118 prediction 0.404162369618772 Functional Loss - RPS27A ENSG00000143947 CDS Human protein_coding chr2:55462056 chr2:55462059 synonymous SNV . 0 24 hm5C_associated_SNPs_97105 0 0 1 0 2 RPS27A chr2:55462098 5'GT 55462098 Upstream 40bp
chr11 11958020 11958020 1 + A C UCEC 11958016 + 11957996 11958036 41 GTTTGATCTGCTGTTGGAGACGAGAAAGCCTGATCAGGTTT GTTTGATCTGCTGTTGGAGACGAGCAAGCCTGATCAGGTTT < 41bp 0.702078265737927 0.298669870939529 0.08903545 0.18457487 prediction 0.404156531475855 Functional Loss - USP47 ENSG00000170242 CDS Human protein_coding chr11:11958016 chr11:11958020 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_97108 0 0 1 0 1 USP47 chr11:11958057 5'GT 11958057 Upstream 38bp
chr2 242149015 242149015 1 + C T SKCM 242149012 + 242148992 242149032 41 TCCCTGAGAGGAGCCGCGCGCGCCGCATGCTGGCCGGCTCT TCCCTGAGAGGAGCCGCGCGCGCTGCATGCTGGCCGGCTCT < 41bp 0.702072491979926 0.492457697462798 0.66640586 0.526416 prediction 0.404144983959851 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242149012 chr2:242149015 nonsynonymous SNV 0.079 1 24 hm5C_associated_SNPs_97114 0 0 0 0 1 ANO7 chr2:242149050 5'GT 242149050 Upstream 36bp
chr9 133294218 133294218 1 + G T SARC 133294214 + 133294194 133294234 41 ACAGTGAGATCTGGGGATGACGTGGCCCTGCGGTGCCAGGC ACAGTGAGATCTGGGGATGACGTGTCCCTGCGGTGCCAGGC < 41bp 0.743615127329822 0.541546467997849 0.3976426 0.16884705 prediction 0.404137318663946 Functional Loss - HMCN2 ENSG00000148357 CDS Human protein_coding chr9:133294214 chr9:133294218 nonsynonymous SNV 0.468 0 25 hm5C_associated_SNPs_97115 0 0 0 0 1 HMCN2 chr9:133294159 3'AG 133294159 Downstream 60bp
chr8 54764607 54764607 1 + G T LUAD 54764603 + 54764583 54764623 41 ACAGAAAATGAAGGAGACCTCAGGGCTGTTCCTGATATCAA ACAGAAAATGAAGGAGACCTCAGGTCTGTTCCTGATATCAA < 41bp 0.702068104193284 0.496963467958066 0.9132888 0.8357736 prediction 0.404136208386567 Functional Loss - RGS20 ENSG00000147509 CDS Human protein_coding chr8:54764603 chr8:54764607 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_97116 0 0 0 0 1 RGS20 chr8:54764624 5'GT 54764624 Upstream 18bp
chr22 40803462 40803462 1 + G A CESC 40803459 + 40803439 40803479 41 TGGAGAGCCACCAGCGGGACCACGAGAACTACGTGGCGTGC TGGAGAGCCACCAGCGGGACCACAAGAACTACGTGGCGTGC < 41bp 0.813994207946611 0.611928706956923 0.27133924 0.30171007 prediction 0.404131001979374 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40803459 chr22:40803462 nonsynonymous SNV 0.886 1 24 hm5C_associated_SNPs_97118 0 0 0 0 1 SGSM3 chr22:40803417 3'AG 40803417 Downstream 46bp
chr7 97821008 97821008 1 + C T PAAD 97821005 + 97820985 97821025 41 TGCACAGGCTGCTGACTTACCTGCGGCTGCAGAGCCAGCGG TGCACAGGCTGCTGACTTACCTGTGGCTGCAGAGCCAGCGG < 41bp 0.768651684654362 0.566586622318395 0.89750725 0.35537866 prediction 0.404130124671934 Functional Loss - LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97821005 chr7:97821008 nonsynonymous SNV 0.903 3 24 hm5C_associated_SNPs_97119 0 0 1 0 1 LMTK2 chr7:97820926 3'AG 97820926 Downstream 83bp
chr7 76140314 76140314 1 + C T SKCM 76140311 + 76140291 76140331 41 CTGGAGCAGCCGCGCTGTGTCTTCGATGGGCTTGCCAGCGC CTGGAGCAGCCGCGCTGTGTCTTTGATGGGCTTGCCAGCGC < 41bp 0.756353050867056 0.554288042520439 0.27543867 0.19365355 prediction 0.404130016693234 Functional Loss - UPK3B ENSG00000243566 CDS Human protein_coding chr7:76140311 chr7:76140314 synonymous SNV . 0 24 hm5C_associated_SNPs_97120 0 0 0 0 2 UPK3B chr7:76140220 3'AG 76140220 Downstream 95bp
chr7 76140314 76140314 1 + C T SKCM 76140311 + 76140291 76140331 41 CTGGAGCAGCCGCGCTGTGTCTTCGATGGGCTTGCCAGCGC CTGGAGCAGCCGCGCTGTGTCTTTGATGGGCTTGCCAGCGC < 41bp 0.756353050867056 0.554288042520439 0.27543867 0.19365355 prediction 0.404130016693234 Functional Loss - UPK3B ENSG00000243566 CDS Human protein_coding chr7:76140311 chr7:76140314 synonymous SNV . 0 24 hm5C_associated_SNPs_97120 0 0 0 0 2 UPK3B chr7:76140369 5'GT 76140369 Upstream 56bp
chr22 38274115 38274115 1 + C T GBM 38274112 + 38274092 38274132 41 ATGAAGAACCTCGTGTGGACCAGCGGTATCTCAGCCCTGGA ATGAAGAACCTCGTGTGGACCAGTGGTATCTCAGCCCTGGA < 41bp 0.764810894905238 0.562747004850576 0.7345703 0.39089885 prediction 0.404127780109324 Functional Loss - EIF3L ENSG00000100129 CDS Human protein_coding chr22:38274112 chr22:38274115 synonymous SNV . 0 24 hm5C_associated_SNPs_97121 0 0 1 0 1 EIF3L chr22:38274178 5'GT 38274178 Upstream 64bp
chr2 70047952 70047952 1 + A T LIHC 70047950 + 70047930 70047970 41 AAGTCTCTGTACTCGTTCATCAAGGTAGGTCACAGCAGCCT AAGTCTCTGTACTCGTTCATCATGGTAGGTCACAGCAGCCT < 41bp 0.715012982741496 0.512949605043714 0.8885108 0.8411217 prediction 0.404126755395565 Functional Loss - ANXA4 ENSG00000196975 CDS Human protein_coding chr2:70047950 chr2:70047952 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_97122 0 0 1 0 1 ANXA4 chr2:70047953 5'GT 70047953 Upstream 2bp
chr20 33296573 33296573 1 + C T HNSC 33296570 + 33296550 33296590 41 CAGCGCCTCTCCAGCCTCTTCTTCAGCACCCCCTCGCCCCC CAGCGCCTCTCCAGCCTCTTCTTTAGCACCCCCTCGCCCCC < 41bp 0.734952690618546 0.532889530892846 0.062740624 0.056164354 prediction 0.404126319451401 Functional Loss - TP53INP2 ENSG00000078804 CDS Human protein_coding chr20:33296570 chr20:33296573 synonymous SNV . 0 24 hm5C_associated_SNPs_97123 0 0 1 0 2 TP53INP2 chr20:33296495 3'AG 33296495 Downstream 79bp
chr20 33296573 33296573 1 + C T HNSC 33296570 + 33296550 33296590 41 CAGCGCCTCTCCAGCCTCTTCTTCAGCACCCCCTCGCCCCC CAGCGCCTCTCCAGCCTCTTCTTTAGCACCCCCTCGCCCCC < 41bp 0.734952690618546 0.532889530892846 0.062740624 0.056164354 prediction 0.404126319451401 Functional Loss - TP53INP2 ENSG00000078804 CDS Human protein_coding chr20:33296570 chr20:33296573 synonymous SNV . 0 24 hm5C_associated_SNPs_97123 0 0 1 0 2 TP53INP2 chr20:33296667 5'GT 33296667 Upstream 95bp
chr22 32754153 32754153 1 + C T LUSC 32754150 + 32754130 32754170 41 TCCCCTGGCAGTGGACATGGCTGCACTCTTCCAAGAAGCAA TCCCCTGGCAGTGGACATGGCTGTACTCTTCCAAGAAGCAA < 41bp 0.749487249656493 0.547426718810486 0.05857283 0.06240204 prediction 0.404121061692015 Functional Loss - RFPL3 ENSG00000128276 CDS Human protein_coding chr22:32754150 chr22:32754153 nonsynonymous SNV 0.022 1 24 hm5C_associated_SNPs_97126 0 0 0 0 1 RFPL3 chr22:32754141 3'AG 32754141 Downstream 13bp
chr6 3140730 3140730 1 + G A UCEC 3140727 + 3140707 3140747 41 ATGCCGACTTCATTCATAAGCACGTGAAAGGCTCACGGTAA ATGCCGACTTCATTCATAAGCACATGAAAGGCTCACGGTAA < 41bp 0.823039136173067 0.620978843852337 0.38430458 0.3204205 prediction 0.404120584641459 Functional Loss - BPHL ENSG00000137274 CDS Human protein_coding chr6:3140727 chr6:3140730 nonsynonymous SNV 0.203 4 24 hm5C_associated_SNPs_97127 0 0 1 0 1 BPHL chr6:3140743 5'GT 3140743 Upstream 14bp
chr8 145151504 145151504 1 + A T LUSC 145151502 + 145151482 145151522 41 CCTAGGCATGGTGGTGAGGACTACGTCTTCTCCCTGCTCAC CCTAGGCATGGTGGTGAGGACTTCGTCTTCTCCCTGCTCAC < 41bp 0.717679193809159 0.515620128718305 0.017333895 0.030748457 prediction 0.404118130181708 Functional Loss - CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151502 chr8:145151504 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_97129 0 0 1 0 1 CYC1 chr8:145151487 3'AG 145151487 Downstream 18bp
chr20 16712882 16712882 1 + G A LUSC 16712879 + 16712859 16712899 41 GACATTGTGGCTTTAAAGACCATGAAGATGAGGGGGCAGGC GACATTGTGGCTTTAAAGACCATAAAGATGAGGGGGCAGGC < 41bp 0.778915748573618 0.576858201703664 0.08762458 0.056546956 prediction 0.404115093739907 Functional Loss - SNRPB2 ENSG00000125870 CDS Human protein_coding chr20:16712879 chr20:16712882 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_97130 0 0 1 0 2 SNRPB2 chr20:16712809 3'AG 16712809 Downstream 74bp
chr20 16712882 16712882 1 + G A LUSC 16712879 + 16712859 16712899 41 GACATTGTGGCTTTAAAGACCATGAAGATGAGGGGGCAGGC GACATTGTGGCTTTAAAGACCATAAAGATGAGGGGGCAGGC < 41bp 0.778915748573618 0.576858201703664 0.08762458 0.056546956 prediction 0.404115093739907 Functional Loss - SNRPB2 ENSG00000125870 CDS Human protein_coding chr20:16712879 chr20:16712882 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_97130 0 0 1 0 2 SNRPB2 chr20:16712981 5'GT 16712981 Upstream 100bp
chr2 27656302 27656302 1 + G T UCEC 27656298 + 27656278 27656318 41 AGAAGAAAGTGAAGATGAGTCTGAGATTTTGGAAGAGTCGC AGAAGAAAGTGAAGATGAGTCTGATATTTTGGAAGAGTCGC < 41bp 0.702055269806439 0.499036696274276 0.14974365 0.13732213 prediction 0.404110539612879 Functional Loss - NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27656298 chr2:27656302 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_97133 0 0 1 0 1 NRBP1 chr2:27656350 5'GT 27656350 Upstream 49bp
chrX 67940160 67940160 1 + C T BRCA 67940158 + 67940138 67940178 41 CCCCAGATTACCGGGGACAGCACGTATTTGGGGTGCCACCC CCCCAGATTACCGGGGACAGCATGTATTTGGGGTGCCACCC < 41bp 0.702050848926618 0.42205301991842 0.1492354 0.350951 prediction 0.404101697853237 Functional Loss - STARD8 ENSG00000130052 CDS Human protein_coding chrX:67940158 chrX:67940160 synonymous SNV . 0 23 hm5C_associated_SNPs_97134 0 0 0 0 1 STARD8 chrX:67940106 3'AG 67940106 Downstream 55bp
chr11 60557915 60557915 1 + C T UCEC 60557913 + 60557893 60557933 41 CAGACAAGTGCACCCCAGAACACGACCCAGCCCAAGCTCCT CAGACAAGTGCACCCCAGAACATGACCCAGCCCAAGCTCCT < 41bp 0.843653842981237 0.641604911290019 0.23434252 0.19853291 prediction 0.404097863382436 Functional Loss - MS4A10 ENSG00000172689 CDS Human protein_coding chr11:60557913 chr11:60557915 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_97136 0 0 0 0 1 MS4A10 chr11:60557991 5'GT 60557991 Upstream 77bp
chr17 72349652 72349652 1 + T C UCEC 72349651 + 72349631 72349671 41 AGGCCCCGGCTCAGGACAGCCTGGGCAGCTGGATCAACTCT AGGCCCCGGCTCAGGACAGCCCGGGCAGCTGGATCAACTCT < 41bp 0.702047722645406 0.446775727814318 0.048511505 0.17420146 prediction 0.404095445290812 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72349651 chr17:72349652 nonsynonymous SNV 0.529 0 22 hm5C_associated_SNPs_97138 0 0 0 0 2 KIF19 chr17:72349633 3'AG 72349633 Downstream 20bp
chr17 72349652 72349652 1 + T C UCEC 72349651 + 72349631 72349671 41 AGGCCCCGGCTCAGGACAGCCTGGGCAGCTGGATCAACTCT AGGCCCCGGCTCAGGACAGCCCGGGCAGCTGGATCAACTCT < 41bp 0.702047722645406 0.446775727814318 0.048511505 0.17420146 prediction 0.404095445290812 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72349651 chr17:72349652 nonsynonymous SNV 0.529 0 22 hm5C_associated_SNPs_97138 0 0 0 0 2 KIF19 chr17:72349720 5'GT 72349720 Upstream 69bp
chrX 79277875 79277875 1 + G C LUSC 79277871 + 79277851 79277891 41 TACAGGCGGAGCAGCCTGAGCTGCGGGAGAAAAAGGGCGGA TACAGGCGGAGCAGCCTGAGCTGCCGGAGAAAAAGGGCGGA < 41bp 0.89242283352587 0.690378049777725 0.61584896 0.46277338 prediction 0.40408956749629 Functional Loss - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79277871 chrX:79277875 nonsynonymous SNV 0.490 1 25 hm5C_associated_SNPs_97141 0 0 0 0 1 TBX22 chrX:79277943 5'GT 79277943 Upstream 69bp
chr15 75586708 75586708 1 + G T LUAD 75586706 + 75586686 75586726 41 AAGTTTTTTATGAAGTGAGCCTGGACAACAACGTGGAGCCT AAGTTTTTTATGAAGTGAGCCTTGACAACAACGTGGAGCCT < 41bp 0.702037864331546 0.36328173206448 0.3406854 0.11105794 prediction 0.404075728663092 Functional Loss - GOLGA6D ENSG00000140478 CDS Human protein_coding chr15:75586706 chr15:75586708 synonymous SNV . 0 23 hm5C_associated_SNPs_97146 0 0 0 0 1 GOLGA6D chr15:75586689 3'AG 75586689 Downstream 20bp
chr5 79372811 79372811 1 + G A HNSC 79372808 + 79372788 79372828 41 ACAATGATGGTATCCCAGACCTGGTGCCCCCTGGACCAGAC ACAATGATGGTATCCCAGACCTGATGCCCCCTGGACCAGAC < 41bp 0.702034624761292 0.462606867209674 0.211777 0.0657773 prediction 0.404069249522584 Functional Loss - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79372808 chr5:79372811 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_97148 0 0 0 0 1 THBS4 chr5:79372871 5'GT 79372871 Upstream 61bp
chr1 230883428 230883428 1 + G T UCEC 230883424 + 230883404 230883444 41 CCTGTTCTACAGTGAGAGGCCGCAGATCCCCTTTGTGTGGA CCTGTTCTACAGTGAGAGGCCGCATATCCCCTTTGTGTGGA < 41bp 0.721682428182934 0.519648252692123 0.18977854 0.087750554 prediction 0.404068350981622 Functional Loss - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230883424 chr1:230883428 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_97149 0 0 0 0 1 CAPN9 chr1:230883455 5'GT 230883455 Upstream 28bp
chr18 43217125 43217125 1 + G T STAD 43217123 + 43217103 43217143 41 TCTTCAGTGCCCAATATCACCTGGACAGAGATGGAAATGCC TCTTCAGTGCCCAATATCACCTTGACAGAGATGGAAATGCC < 41bp 0.702033447507682 0.370184433639419 0.3386621 0.14170009 prediction 0.404066895015365 Functional Loss - SLC14A2 ENSG00000132874 CDS Human protein_coding chr18:43217123 chr18:43217125 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_97150 0 0 0 0 1 SLC14A2 chr18:43217147 5'GT 43217147 Upstream 23bp
chr1 46649973 46649973 1 + G A HNSC 46649970 + 46649950 46649990 41 AGTGCCATGCAGTTTGTCAACGTGGGCTACTTCCTCATCGC AGTGCCATGCAGTTTGTCAACGTAGGCTACTTCCTCATCGC < 41bp 0.826536655625451 0.624503458590815 0.8891295 0.7885577 prediction 0.404066394069271 Functional Loss - TSPAN1 ENSG00000117472 CDS Human protein_coding chr1:46649970 chr1:46649973 synonymous SNV . 0 24 hm5C_associated_SNPs_97151 0 0 0 0 1 TSPAN1 chr1:46650069 5'GT 46650069 Upstream 97bp
chr5 148997777 148997777 1 + G T LUAD 148997774 + 148997754 148997794 41 AGGTAGAGCAGCTGACCCTCCGGGAGCGGCTGGCCCGCATC AGGTAGAGCAGCTGACCCTCCGGTAGCGGCTGGCCCGCATC < 41bp 0.942374017533475 0.740343708782074 0.9112426 0.34428847 prediction 0.404060617502802 Functional Loss - ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:148997774 chr5:148997777 stopgain 0.993 1 24 hm5C_associated_SNPs_97152 0 0 0 0 1 ARHGEF37 chr5:148997739 3'AG 148997739 Downstream 39bp
chr6 44371690 44371690 1 + T C rs11571943 44371689 + 44371669 44371709 41 CCTTGGTTTTTATGATACTTCTGAGGAAAACTACCAAGCTC CCTTGGTTTTTATGATACTTCCGAGGAAAACTACCAAGCTC < 41bp 0.702029304332259 0.461441333859567 0.15423074 0.33436316 prediction 0.404058608664519 Functional Loss - CDC5L ENSG00000096401 CDS Human protein_coding chr6:44371689 chr6:44371690 synonymous SNV . 0 22 hm5C_associated_SNPs_97153 0 0 1 0 1 CDC5L chr6:44371764 5'GT 44371764 Upstream 75bp
chr20 33851658 33851658 1 + C T ESCA 33851655 + 33851635 33851675 41 GCGCTGGGACTGGAGCACTCCAGCGACCCCAGCGCCATCAT GCGCTGGGACTGGAGCACTCCAGTGACCCCAGCGCCATCAT < 41bp 0.702029089995364 0.492607883880325 0.33566493 0.19546962 prediction 0.404058179990728 Functional Loss - MMP24 ENSG00000125966 CDS Human protein_coding chr20:33851655 chr20:33851658 synonymous SNV . 0 24 hm5C_associated_SNPs_97154 0 0 0 0 2 MMP24 chr20:33851594 3'AG 33851594 Downstream 65bp
chr20 33851658 33851658 1 + C T ESCA 33851655 + 33851635 33851675 41 GCGCTGGGACTGGAGCACTCCAGCGACCCCAGCGCCATCAT GCGCTGGGACTGGAGCACTCCAGTGACCCCAGCGCCATCAT < 41bp 0.702029089995364 0.492607883880325 0.33566493 0.19546962 prediction 0.404058179990728 Functional Loss - MMP24 ENSG00000125966 CDS Human protein_coding chr20:33851655 chr20:33851658 synonymous SNV . 0 24 hm5C_associated_SNPs_97154 0 0 0 0 2 MMP24 chr20:33851755 5'GT 33851755 Upstream 98bp
chr7 99720112 99720112 1 + G T UCEC 99720109 + 99720089 99720129 41 CCTCTCTTTCCACAGAGAGACAAGGCTGGAAGAGGCCTTAG CCTCTCTTTCCACAGAGAGACAATGCTGGAAGAGGCCTTAG < 41bp 0.702022004685257 0.297341280641819 0.37718108 0.5500023 prediction 0.404044009370514 Functional Loss - CNPY4 ENSG00000166997 CDS Human protein_coding chr7:99720109 chr7:99720112 nonsynonymous SNV 0.756 4 24 hm5C_associated_SNPs_97164 0 0 1 0 2 CNPY4 chr7:99720104 3'AG 99720104 Downstream 9bp
chr7 99720112 99720112 1 + G T UCEC 99720109 + 99720089 99720129 41 CCTCTCTTTCCACAGAGAGACAAGGCTGGAAGAGGCCTTAG CCTCTCTTTCCACAGAGAGACAATGCTGGAAGAGGCCTTAG < 41bp 0.702022004685257 0.297341280641819 0.37718108 0.5500023 prediction 0.404044009370514 Functional Loss - CNPY4 ENSG00000166997 CDS Human protein_coding chr7:99720109 chr7:99720112 nonsynonymous SNV 0.756 4 24 hm5C_associated_SNPs_97164 0 0 1 0 2 CNPY4 chr7:99720200 5'GT 99720200 Upstream 89bp
chr1 23191446 23191446 1 + C T KIRC 23191444 + 23191424 23191464 41 TGCTGGAGTGGACCCCTCCCCGCGACTCCGGAGGCCGAGAG TGCTGGAGTGGACCCCTCCCCGTGACTCCGGAGGCCGAGAG < 41bp 0.881275709949665 0.679254235957551 0.21650189 0.073544264 prediction 0.404042947984228 Functional Loss - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23191444 chr1:23191446 synonymous SNV . 0 23 hm5C_associated_SNPs_97166 0 0 0 0 1 EPHB2 chr1:23191370 3'AG 23191370 Downstream 77bp
chr5 75991296 75991296 1 + G A HNSC 75991293 + 75991273 75991313 41 TTTCAGGAGGTAGACCATGCCACGGACATGGTGAGCCGTGC TTTCAGGAGGTAGACCATGCCACAGACATGGTGAGCCGTGC < 41bp 0.702020032667085 0.482032048834522 0.232672 0.113363296 prediction 0.40404006533417 Functional Loss - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75991293 chr5:75991296 synonymous SNV . 0 24 hm5C_associated_SNPs_97169 0 0 1 0 1 IQGAP2 chr5:75991279 3'AG 75991279 Downstream 18bp
chr20 53208301 53208301 1 + C T BRCA 53208298 + 53208278 53208318 41 CTTGGCCGCTAAGCGCCCTGCGGCGGTATGGACGTGATACT CTTGGCCGCTAAGCGCCCTGCGGTGGTATGGACGTGATACT < 41bp 0.767575210793535 0.565555879152637 0.7499446 0.56108475 prediction 0.404038663281796 Functional Loss - DOK5 ENSG00000101134 CDS Human protein_coding chr20:53208298 chr20:53208301 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_97170 0 0 0 0 1 DOK5 chr20:53208344 5'GT 53208344 Upstream 44bp
chr18 28926052 28926052 1 + G T rs570598771 28926049 + 28926029 28926069 41 AACAGAGGGAGTTAAAACTTCAGGAATGCCTGAGATATGTC AACAGAGGGAGTTAAAACTTCAGTAATGCCTGAGATATGTC < 41bp 0.70201742481586 0.315692705379661 0.28342682 0.08766061 prediction 0.404034849631719 Functional Loss - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28926049 chr18:28926052 nonsynonymous SNV 0.123 0 24 hm5C_associated_SNPs_97172 0 0 0 0 1 DSG1 chr18:28925953 3'AG 28925953 Downstream 100bp
chr2 105122372 105122372 1 + G T rs59518628 105122369 + 105122349 105122389 41 CGTTTACTGAAAGGAGATTCCTGGGCTGGAGGAAAACCATG CGTTTACTGAAAGGAGATTCCTGTGCTGGAGGAAAACCATG < 41bp 0.702014823123593 0.343811677364626 0.20628324 0.10032356 prediction 0.404029646247186 Functional Loss - LINC01102 ENSG00000235597 ncRNA_exonic Human lincRNA chr2:105122369 chr2:105122372 . . 0 24 hm5C_associated_SNPs_97176 0 0 0 0 1 LINC01102 chr2:105122324 3'AG 105122324 Downstream 49bp
chr1 228210549 228210549 1 + C T UCEC 228210546 + 228210526 228210566 41 GCCAGCACCAGTTCCGCGGCCGCCGGTGGAACTGCACCACC GCCAGCACCAGTTCCGCGGCCGCTGGTGGAACTGCACCACC < 41bp 0.758607088687662 0.556592951234248 0.39266276 0.27281845 prediction 0.404028274906827 Functional Loss - WNT3A ENSG00000154342 CDS Human protein_coding chr1:228210546 chr1:228210549 nonsynonymous SNV 0.306 4 24 hm5C_associated_SNPs_97177 0 0 0 0 1 WNT3A chr1:228210609 5'GT 228210609 Upstream 61bp
chr6 133783787 133783787 1 + G A HNSC 133783784 + 133783764 133783804 41 GGTGTGATGTTGCCAGCCATCAAGACAGAGAGTGGACTTTC GGTGTGATGTTGCCAGCCATCAAAACAGAGAGTGGACTTTC < 41bp 0.784054889306171 0.582047756845722 0.6430115 0.80282474 prediction 0.404014264920898 Functional Loss - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133783784 chr6:133783787 synonymous SNV . 0 24 hm5C_associated_SNPs_97181 0 0 0 0 1 EYA4 chr6:133783759 3'AG 133783759 Downstream 29bp
chr20 44574459 44574459 1 + C T rs41450546 44574456 + 44574436 44574476 41 GTGGAGATGCACATGGAGAACAACGTGGTCTGCATCCGGTA GTGGAGATGCACATGGAGAACAATGTGGTCTGCATCCGGTA < 41bp 0.723649892798553 0.521644662596699 0.11458862 0.18045783 prediction 0.404010460403707 Functional Loss - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44574456 chr20:44574459 synonymous SNV . 0 24 hm5C_associated_SNPs_97184 0 0 1 0 1 PCIF1 chr20:44574522 5'GT 44574522 Upstream 64bp
chr12 122614518 122614518 1 + G T SARC 122614515 + 122614495 122614535 41 ACATGCTGTATTGGCACAAGCACGGGGATGGATGGAAGACC ACATGCTGTATTGGCACAAGCACTGGGATGGATGGAAGACC < 41bp 0.702004237044175 0.288560672947271 0.6733075 0.2368989 prediction 0.40400847408835 Functional Loss - MLXIP ENSG00000175727 CDS Human protein_coding chr12:122614515 chr12:122614518 nonsynonymous SNV 0.477 3 24 hm5C_associated_SNPs_97185 0 0 1 0 1 MLXIP chr12:122614488 3'AG 122614488 Downstream 31bp
chr19 42791718 42791718 1 + C T LGG 42791715 + 42791695 42791735 41 AGCGGGAGAAGGACCACATCCGGCGGCCCATGAATGCCTTC AGCGGGAGAAGGACCACATCCGGTGGCCCATGAATGCCTTC < 41bp 0.73197895211221 0.529975957070366 0.43389684 0.21848297 prediction 0.404005990083688 Functional Loss - CIC ENSG00000079432 CDS Human protein_coding chr19:42791715 chr19:42791718 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_97186 0 0 1 0 1 CIC chr19:42791697 3'AG 42791697 Downstream 22bp
chrX 119037297 119037297 1 + T C rs138665493 119037296 + 119037276 119037316 41 GAACTACGAGGATGAATTGACTCAAGTAGCTCTAGCTCTGG GAACTACGAGGATGAATTGACCCAAGTAGCTCTAGCTCTGG < 41bp 0.824548629001668 0.62254651865103 0.37834412 0.09291521 prediction 0.404004220701276 Functional Loss - AKAP14 ENSG00000186471 CDS Human protein_coding chrX:119037296 chrX:119037297 synonymous SNV . 0 22 hm5C_associated_SNPs_97187 0 0 0 0 1 AKAP14 chrX:119037355 5'GT 119037355 Upstream 59bp
chr11 111385712 111385712 1 + G A rs77968758 111385709 + 111385689 111385729 41 CAGTCAGCGTCTGCCGGTGGCGCGGCCCAGGAGGAGCAGAG CAGTCAGCGTCTGCCGGTGGCGCAGCCCAGGAGGAGCAGAG < 41bp 0.818735991142651 0.616734559068925 0.88408077 0.8152556 prediction 0.40400286414745 Functional Loss - C11orf88 ENSG00000183644 CDS Human protein_coding chr11:111385709 chr11:111385712 nonsynonymous SNV 0.023 1 24 hm5C_associated_SNPs_97189 0 0 0 0 1 C11orf88 chr11:111385735 5'GT 111385735 Upstream 24bp
chr19 47858387 47858387 1 + G T THCA 47858383 + 47858363 47858403 41 GGCTGCTCCTGCGACAAATCCAGCGGGAACCCAGCCTGCCC GGCTGCTCCTGCGACAAATCCAGCTGGAACCCAGCCTGCCC < 41bp 0.750255331536451 0.548262911629996 0.89825106 0.8593461 prediction 0.40398483981291 Functional Loss - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47858383 chr19:47858387 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_97191 0 0 1 0 1 DHX34 chr19:47858296 3'AG 47858296 Downstream 92bp
chr7 148481142 148481142 1 + G A UCEC 148481139 + 148481119 148481159 41 TAAATCCCCTGAGTTGCTGGCTCGATACTGTGACTCCTTGT TAAATCCCCTGAGTTGCTGGCTCAATACTGTGACTCCTTGT < 41bp 0.701991313948115 0.461581192106955 0.4081992 0.90116465 prediction 0.403982627896231 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148481139 chr7:148481142 nonsynonymous SNV 0.992 2 24 hm5C_associated_SNPs_97192 0 0 1 0 2 CUL1 chr7:148481063 3'AG 148481063 Downstream 80bp
chr7 148481142 148481142 1 + G A UCEC 148481139 + 148481119 148481159 41 TAAATCCCCTGAGTTGCTGGCTCGATACTGTGACTCCTTGT TAAATCCCCTGAGTTGCTGGCTCAATACTGTGACTCCTTGT < 41bp 0.701991313948115 0.461581192106955 0.4081992 0.90116465 prediction 0.403982627896231 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148481139 chr7:148481142 nonsynonymous SNV 0.992 2 24 hm5C_associated_SNPs_97192 0 0 1 0 2 CUL1 chr7:148481169 5'GT 148481169 Upstream 28bp
chr11 60535069 60535069 1 + C T COAD 60535066 + 60535046 60535086 41 GCAGCGTGCTGCTCATGGTTCGCCGCGGCCACGTGGGCATC GCAGCGTGCTGCTCATGGTTCGCTGCGGCCACGTGGGCATC < 41bp 0.721400101711719 0.519412999989908 0.08185887 0.051316768 prediction 0.403974203443623 Functional Loss - MS4A15 ENSG00000166961 CDS Human protein_coding chr11:60535066 chr11:60535069 nonsynonymous SNV 0.673 1 24 hm5C_associated_SNPs_97194 0 0 0 0 3 MS4A15 chr11:60535006 3'AG 60535006 Downstream 64bp
chr11 60535069 60535069 1 + C T COAD 60535066 + 60535046 60535086 41 GCAGCGTGCTGCTCATGGTTCGCCGCGGCCACGTGGGCATC GCAGCGTGCTGCTCATGGTTCGCTGCGGCCACGTGGGCATC < 41bp 0.721400101711719 0.519412999989908 0.08185887 0.051316768 prediction 0.403974203443623 Functional Loss - MS4A15 ENSG00000166961 CDS Human protein_coding chr11:60535066 chr11:60535069 nonsynonymous SNV 0.673 1 24 hm5C_associated_SNPs_97194 0 0 0 0 3 MS4A15 chr11:60535040 3'AG 60535040 Downstream 30bp
chr11 60535069 60535069 1 + C T COAD 60535066 + 60535046 60535086 41 GCAGCGTGCTGCTCATGGTTCGCCGCGGCCACGTGGGCATC GCAGCGTGCTGCTCATGGTTCGCTGCGGCCACGTGGGCATC < 41bp 0.721400101711719 0.519412999989908 0.08185887 0.051316768 prediction 0.403974203443623 Functional Loss - MS4A15 ENSG00000166961 CDS Human protein_coding chr11:60535066 chr11:60535069 nonsynonymous SNV 0.673 1 24 hm5C_associated_SNPs_97194 0 0 0 0 3 MS4A15 chr11:60535128 5'GT 60535128 Upstream 60bp
chr11 60890399 60890399 1 + G T UCEC 60890395 + 60890375 60890415 41 CCAGGCCAGGATCCAAACCCCGCAGGCCTGGCCGCAGGCAC CCAGGCCAGGATCCAAACCCCGCATGCCTGGCCGCAGGCAC < 41bp 0.718320310091899 0.516334380034694 0.21716923 0.1280176 prediction 0.40397186011441 Functional Loss - CD5 ENSG00000110448 CDS Human protein_coding chr11:60890395 chr11:60890399 nonsynonymous SNV 0.030 3 25 hm5C_associated_SNPs_97196 0 0 0 0 1 CD5 chr11:60890379 3'AG 60890379 Downstream 21bp
chr5 75954427 75954427 1 + G A SKCM 75954424 + 75954404 75954444 41 AGATCAGGGCCAATCAACAGCTGGAAAAAGACCTGAACCTG AGATCAGGGCCAATCAACAGCTGAAAAAAGACCTGAACCTG < 41bp 0.765385084368099 0.563399624995103 0.18612853 0.37770104 prediction 0.403970918745993 Functional Loss - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75954424 chr5:75954427 nonsynonymous SNV 0.986 4 24 hm5C_associated_SNPs_97198 0 0 1 0 1 IQGAP2 chr5:75954492 5'GT 75954492 Upstream 66bp
chr9 133942516 133942516 1 + G A rs140540789 133942513 + 133942493 133942533 41 CTGCGCTGCCTGCACAACACCACGGGTGACCACTGTGAGCA CTGCGCTGCCTGCACAACACCACAGGTGACCACTGTGAGCA < 41bp 0.701982159220853 0.442850344617455 0.341146 0.4019202 prediction 0.403964318441706 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133942513 chr9:133942516 synonymous SNV . 0 24 hm5C_associated_SNPs_97202 1 0 0 0 1 LAMC3 chr9:133942592 5'GT 133942592 Upstream 77bp
chr7 129847876 129847876 1 + G T LUAD 129847874 + 129847854 129847894 41 GTGGAACCATAGGGAGCTTCCTGCTTTGGTATTTTGTTATC GTGGAACCATAGGGAGCTTCCTTCTTTGGTATTTTGTTATC < 41bp 0.701981725280471 0.366836198236126 0.12953383 0.18480805 prediction 0.403963450560942 Functional Loss - SSMEM1 ENSG00000165120 CDS Human protein_coding chr7:129847874 chr7:129847876 synonymous SNV . 0 23 hm5C_associated_SNPs_97203 0 0 0 0 1 SSMEM1 chr7:129847933 5'GT 129847933 Upstream 58bp
chr5 169127112 169127112 1 + G A SKCM 169127109 + 169127089 169127129 41 GACAGGACCACCGTGGTGGCCAGGAAGCTGGGATTCCCAGA GACAGGACCACCGTGGTGGCCAGAAAGCTGGGATTCCCAGA < 41bp 0.742587583036991 0.540607768356574 0.562837 0.5387048 prediction 0.403959629360835 Functional Loss - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169127109 chr5:169127112 synonymous SNV . 0 24 hm5C_associated_SNPs_97209 0 0 1 2 2 DOCK2 chr5:169127018 3'AG 169127018 Downstream 95bp
chr5 169127112 169127112 1 + G A SKCM 169127109 + 169127089 169127129 41 GACAGGACCACCGTGGTGGCCAGGAAGCTGGGATTCCCAGA GACAGGACCACCGTGGTGGCCAGAAAGCTGGGATTCCCAGA < 41bp 0.742587583036991 0.540607768356574 0.562837 0.5387048 prediction 0.403959629360835 Functional Loss - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169127109 chr5:169127112 synonymous SNV . 0 24 hm5C_associated_SNPs_97209 0 0 1 2 2 DOCK2 chr5:169127143 5'GT 169127143 Upstream 32bp
chr6 32411210 32411210 1 + T C LUSC 32411209 + 32411189 32411229 41 TACGACTGCAGGGTGGAGCACTGGGGCTTGGATGAGCCTCT TACGACTGCAGGGTGGAGCACCGGGGCTTGGATGAGCCTCT < 41bp 0.740319365831171 0.538343362973298 0.86219263 0.910925 prediction 0.403952005715746 Functional Loss - HLA-DRA ENSG00000204287 CDS Human protein_coding chr6:32411209 chr6:32411210 nonsynonymous SNV 0.086 3 22 hm5C_associated_SNPs_97210 0 0 0 0 1 HLA-DRA chr6:32411243 5'GT 32411243 Upstream 34bp
chr12 22796922 22796922 1 + G A BRCA 22796919 + 22796899 22796939 41 AATTTATACAAGGAGAAGCACTGGATCCAAAGCATGTCTGC AATTTATACAAGGAGAAGCACTGAATCCAAAGCATGTCTGC < 41bp 0.792995611607448 0.591023911385764 0.34058794 0.13876677 prediction 0.403943400443367 Functional Loss - ETNK1 ENSG00000139163 CDS Human protein_coding chr12:22796919 chr12:22796922 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_97213 0 0 1 0 1 ETNK1 chr12:22796956 5'GT 22796956 Upstream 35bp
chr2 132290880 132290880 1 + C T UCEC 132290877 + 132290857 132290897 41 GGCGGAGCGTGCCATCCTGCCCGCACTGAAGCAGACCCCGA GGCGGAGCGTGCCATCCTGCCCGTACTGAAGCAGACCCCGA < 41bp 0.751716209497788 0.549746713508904 0.04226634 0.03961867 prediction 0.403938991977766 Functional Loss - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132290877 chr2:132290880 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_97214 0 0 0 0 1 CCDC74A chr2:132290842 3'AG 132290842 Downstream 39bp
chr19 56565126 56565126 1 + C T STAD 56565123 + 56565103 56565143 41 CCTGGGTGACGGTGGGGTTGCTGCGCTGTGCGAGGGACTGA CCTGGGTGACGGTGGGGTTGCTGTGCTGTGCGAGGGACTGA < 41bp 0.771100177320731 0.569131549077072 0.22389755 0.11193305 prediction 0.403937256487318 Functional Loss - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56565123 chr19:56565126 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_97215 0 0 0 0 1 NLRP5 chr19:56565174 5'GT 56565174 Upstream 49bp
chr2 234107008 234107008 1 + G T LUSC 234107005 + 234106985 234107025 41 GCAAACCGGGGTCTCCCTCCCAGGACACAGGAGTCAAGGTG GCAAACCGGGGTCTCCCTCCCAGTACACAGGAGTCAAGGTG < 41bp 0.701967496278829 0.308596441643089 0.6439502 0.15801373 prediction 0.403934992557657 Functional Loss - INPP5D ENSG00000168918 CDS Human protein_coding chr2:234107005 chr2:234107008 nonsynonymous SNV 0.021 2 24 hm5C_associated_SNPs_97216 0 0 1 0 1 INPP5D chr2:234107022 5'GT 234107022 Upstream 15bp
chr1 158152851 158152851 1 + G T LUAD 158152847 + 158152827 158152867 41 ATGCTGACGAGACATGGTATCTCCGAGCAACCCTGGATGTG ATGCTGACGAGACATGGTATCTCCTAGCAACCCTGGATGTG < 41bp 0.706544713078039 0.504579415840437 0.3488476 0.09752172 prediction 0.403930594475203 Functional Loss - CD1D ENSG00000158473 CDS Human protein_coding chr1:158152847 chr1:158152851 nonsynonymous SNV 0.276 2 25 hm5C_associated_SNPs_97217 0 0 0 0 1 CD1D chr1:158152946 5'GT 158152946 Upstream 96bp
chr17 38172833 38172833 1 + G A BLCA 38172830 + 38172810 38172850 41 TCCCCCGAGTTGGGTCCCACCTTGGACACACTGCAGCTGGA TCCCCCGAGTTGGGTCCCACCTTAGACACACTGCAGCTGGA < 41bp 0.701964279474356 0.448690792699088 0.08207378 0.09950653 prediction 0.403928558948712 Functional Loss - CSF3 ENSG00000108342 CDS Human protein_coding chr17:38172830 chr17:38172833 synonymous SNV . 0 24 hm5C_associated_SNPs_97218 0 0 0 0 2 CSF3 chr17:38172738 3'AG 38172738 Downstream 96bp
chr17 38172833 38172833 1 + G A BLCA 38172830 + 38172810 38172850 41 TCCCCCGAGTTGGGTCCCACCTTGGACACACTGCAGCTGGA TCCCCCGAGTTGGGTCCCACCTTAGACACACTGCAGCTGGA < 41bp 0.701964279474356 0.448690792699088 0.08207378 0.09950653 prediction 0.403928558948712 Functional Loss - CSF3 ENSG00000108342 CDS Human protein_coding chr17:38172830 chr17:38172833 synonymous SNV . 0 24 hm5C_associated_SNPs_97218 0 0 0 0 2 CSF3 chr17:38172884 5'GT 38172884 Upstream 52bp
chr22 24124579 24124579 1 + C T COAD 24124576 + 24124556 24124596 41 GACTACTGGCGTTTCCACCCCAGCACCCGGCGTGTAGACAG GACTACTGGCGTTTCCACCCCAGTACCCGGCGTGTAGACAG < 41bp 0.774219302003199 0.572255153247777 0.1329352 0.16307381 prediction 0.403928297510844 Functional Loss - MMP11 ENSG00000099953;ENSG00000267954 CDS Human other chr22:24124576 chr22:24124579 nonsynonymous SNV 0.295 0 24 hm5C_associated_SNPs_97219 0 0 1 0 2 MMP11 chr22:24124555 3'AG 24124555 Downstream 25bp
chr22 24124579 24124579 1 + C T COAD 24124576 + 24124556 24124596 41 GACTACTGGCGTTTCCACCCCAGCACCCGGCGTGTAGACAG GACTACTGGCGTTTCCACCCCAGTACCCGGCGTGTAGACAG < 41bp 0.774219302003199 0.572255153247777 0.1329352 0.16307381 prediction 0.403928297510844 Functional Loss - MMP11 ENSG00000099953;ENSG00000267954 CDS Human other chr22:24124576 chr22:24124579 nonsynonymous SNV 0.295 0 24 hm5C_associated_SNPs_97219 0 0 1 0 2 MMP11 chr22:24124670 5'GT 24124670 Upstream 92bp
chr6 117198636 117198636 1 + G A SKCM 117198633 + 117198613 117198653 41 GGCGGGGAGAAAGGCGAAGACCCGGAGCTGCCGGGGGCAGT GGCGGGGAGAAAGGCGAAGACCCAGAGCTGCCGGGGGCAGT < 41bp 0.825429230050767 0.623479444339023 0.6394304 0.47632152 prediction 0.403899571423488 Functional Loss - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117198633 chr6:117198636 synonymous SNV . 0 24 hm5C_associated_SNPs_97226 0 0 0 0 1 RFX6 chr6:117198661 5'GT 117198661 Upstream 26bp
chr10 17750825 17750825 1 + G A UCEC 17750822 + 17750802 17750842 41 GCCTACCTGGTTGCAGGGAACGCGCAGATGAGCCACCTCCA GCCTACCTGGTTGCAGGGAACGCACAGATGAGCCACCTCCA < 41bp 0.820282595191193 0.618337992103897 0.7363924 0.29880735 prediction 0.403889206174593 Functional Loss - STAM ENSG00000136738 CDS Human protein_coding chr10:17750822 chr10:17750825 synonymous SNV . 0 24 hm5C_associated_SNPs_97228 0 0 1 0 1 STAM chr10:17750775 3'AG 17750775 Downstream 51bp
chr11 130005535 130005535 1 + G A GBM 130005532 + 130005512 130005552 41 CAGAGACCCCTGTGGACGTCCGGGTGAGCTCTGAGGAGAGT CAGAGACCCCTGTGGACGTCCGGATGAGCTCTGAGGAGAGT < 41bp 0.701936190198014 0.459024019519349 0.82791173 0.5236258 prediction 0.403872380396029 Functional Loss - APLP2 ENSG00000084234 CDS Human protein_coding chr11:130005532 chr11:130005535 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_97230 0 0 1 0 2 APLP2 chr11:130005458 3'AG 130005458 Downstream 78bp
chr11 130005535 130005535 1 + G A GBM 130005532 + 130005512 130005552 41 CAGAGACCCCTGTGGACGTCCGGGTGAGCTCTGAGGAGAGT CAGAGACCCCTGTGGACGTCCGGATGAGCTCTGAGGAGAGT < 41bp 0.701936190198014 0.459024019519349 0.82791173 0.5236258 prediction 0.403872380396029 Functional Loss - APLP2 ENSG00000084234 CDS Human protein_coding chr11:130005532 chr11:130005535 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_97230 0 0 1 0 2 APLP2 chr11:130005610 5'GT 130005610 Upstream 76bp
chr16 90108917 90108917 1 + C T UCEC 90108914 + 90108894 90108934 41 AGAACAGCACCATCAAGGACCTGCAGTATGAGCTGGCCCAG AGAACAGCACCATCAAGGACCTGTAGTATGAGCTGGCCCAG < 41bp 0.792429563595033 0.590494574287237 0.14950457 0.19906172 prediction 0.403869978615592 Functional Loss - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90108914 chr16:90108917 stopgain 0.998 1 24 hm5C_associated_SNPs_97231 0 0 1 0 2 GAS8 chr16:90108878 3'AG 90108878 Downstream 40bp
chr16 90108917 90108917 1 + C T UCEC 90108914 + 90108894 90108934 41 AGAACAGCACCATCAAGGACCTGCAGTATGAGCTGGCCCAG AGAACAGCACCATCAAGGACCTGTAGTATGAGCTGGCCCAG < 41bp 0.792429563595033 0.590494574287237 0.14950457 0.19906172 prediction 0.403869978615592 Functional Loss - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90108914 chr16:90108917 stopgain 0.998 1 24 hm5C_associated_SNPs_97231 0 0 1 0 2 GAS8 chr16:90108943 5'GT 90108943 Upstream 27bp
chr5 96271832 96271832 1 + G C rs543713716 96271828 + 96271808 96271848 41 CGGAGTAGGAAGCTCGGGCGCTCCGGCTGTAAGGAGCCGCG CGGAGTAGGAAGCTCGGGCGCTCCCGCTGTAAGGAGCCGCG < 41bp 0.719382508901312 0.51744870095119 0.5825138 0.5098972 prediction 0.403867615900244 Functional Loss - LNPEP ENSG00000113441 UTR5 Human protein_coding chr5:96271828 chr5:96271832 . . 0 25 hm5C_associated_SNPs_97233 0 0 1 0 1 LNPEP chr5:96271878 5'GT 96271878 Upstream 47bp
chr1 15573887 15573887 1 + G C rs114853711 15573886 + 15573866 15573906 41 GAGCGTGGGCTTCCTCCTCCCGCCAGGTGAGTGCGGCGCGG GAGCGTGGGCTTCCTCCTCCCCCCAGGTGAGTGCGGCGCGG < 41bp 0.796918611477908 0.594985287795423 0.8343967 0.10549089 prediction 0.403866647364971 Functional Loss - FHAD1 ENSG00000142621 CDS Human protein_coding chr1:15573886 chr1:15573887 unknown . 0 22 hm5C_associated_SNPs_97234 0 0 0 0 1 FHAD1 chr1:15573891 5'GT 15573891 Upstream 5bp
chr19 52443521 52443521 1 + C T CESC 52443519 + 52443499 52443539 41 CTTGGGAGGAGTGGCAGCTCCTCGGCCCTGCTCAGAAGGAC CTTGGGAGGAGTGGCAGCTCCTTGGCCCTGCTCAGAAGGAC < 41bp 0.875127325273393 0.67319484479562 0.7200913 0.6787676 prediction 0.403864960955545 Functional Loss - ZNF613 ENSG00000176024 CDS Human protein_coding chr19:52443519 chr19:52443521 synonymous SNV . 0 23 hm5C_associated_SNPs_97235 0 0 0 0 2 ZNF613 chr19:52443462 3'AG 52443462 Downstream 60bp
chr19 52443521 52443521 1 + C T CESC 52443519 + 52443499 52443539 41 CTTGGGAGGAGTGGCAGCTCCTCGGCCCTGCTCAGAAGGAC CTTGGGAGGAGTGGCAGCTCCTTGGCCCTGCTCAGAAGGAC < 41bp 0.875127325273393 0.67319484479562 0.7200913 0.6787676 prediction 0.403864960955545 Functional Loss - ZNF613 ENSG00000176024 CDS Human protein_coding chr19:52443519 chr19:52443521 synonymous SNV . 0 23 hm5C_associated_SNPs_97235 0 0 0 0 2 ZNF613 chr19:52443588 5'GT 52443588 Upstream 68bp
chr3 42633038 42633038 1 + C T UCEC 42633035 + 42633015 42633055 41 AGCTCCTTGAGGAGAATGACCAGCTGATCCGCTGTATTGTG AGCTCCTTGAGGAGAATGACCAGTTGATCCGCTGTATTGTG < 41bp 0.734170926953158 0.532238489048331 0.8960327 0.83184254 prediction 0.403864875809654 Functional Loss - SS18L2 ENSG00000008324 CDS Human protein_coding chr3:42633035 chr3:42633038 synonymous SNV . 0 24 hm5C_associated_SNPs_97236 0 0 1 0 2 SS18L2 chr3:42633017 3'AG 42633017 Downstream 22bp
chr3 42633038 42633038 1 + C T UCEC 42633035 + 42633015 42633055 41 AGCTCCTTGAGGAGAATGACCAGCTGATCCGCTGTATTGTG AGCTCCTTGAGGAGAATGACCAGTTGATCCGCTGTATTGTG < 41bp 0.734170926953158 0.532238489048331 0.8960327 0.83184254 prediction 0.403864875809654 Functional Loss - SS18L2 ENSG00000008324 CDS Human protein_coding chr3:42633035 chr3:42633038 synonymous SNV . 0 24 hm5C_associated_SNPs_97236 0 0 1 0 2 SS18L2 chr3:42633093 5'GT 42633093 Upstream 56bp
chr17 4648584 4648584 1 + G T UCEC 4648580 + 4648560 4648600 41 GATGGACGGCCAGACCATGGCGGTGGCCACTGGAGGGGGCA GATGGACGGCCAGACCATGGCGGTTGCCACTGGAGGGGGCA < 41bp 0.71816762267028 0.516236634338774 0.3857677 0.21157387 prediction 0.403861976663013 Functional Loss - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4648580 chr17:4648584 synonymous SNV . 0 25 hm5C_associated_SNPs_97237 0 0 0 0 2 ZMYND15 chr17:4648510 3'AG 4648510 Downstream 75bp
chr17 4648584 4648584 1 + G T UCEC 4648580 + 4648560 4648600 41 GATGGACGGCCAGACCATGGCGGTGGCCACTGGAGGGGGCA GATGGACGGCCAGACCATGGCGGTTGCCACTGGAGGGGGCA < 41bp 0.71816762267028 0.516236634338774 0.3857677 0.21157387 prediction 0.403861976663013 Functional Loss - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4648580 chr17:4648584 synonymous SNV . 0 25 hm5C_associated_SNPs_97237 0 0 0 0 2 ZMYND15 chr17:4648670 5'GT 4648670 Upstream 87bp
chr16 28509501 28509501 1 + C T SKCM 28509498 + 28509478 28509518 41 GTCGCTCCCGGCCCTCTTTTCGTCGGACTCCGGCCTGGGAG GTCGCTCCCGGCCCTCTTTTCGTTGGACTCCGGCCTGGGAG < 41bp 0.716386642303914 0.514459588465105 0.5982192 0.18840191 prediction 0.403854107677618 Functional Loss - APOBR ENSG00000184730 CDS Human protein_coding chr16:28509498 chr16:28509501 nonsynonymous SNV 0.127 3 24 hm5C_associated_SNPs_97241 0 0 0 0 1 APOBR chr16:28509402 3'AG 28509402 Downstream 100bp
chr11 89402656 89402656 1 + G A SKCM 89402653 + 89402633 89402673 41 CAATGTTGGACCTGGCTTTACTGGAAACTTTTCTACACAGT CAATGTTGGACCTGGCTTTACTGAAAACTTTTCTACACAGT < 41bp 0.741803533547417 0.539877713790777 0.057914823 0.06903419 prediction 0.403851639513279 Functional Loss - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89402653 chr11:89402656 . . 0 24 hm5C_associated_SNPs_97243 0 0 0 0 2 FOLH1B chr11:89402573 3'AG 89402573 Downstream 84bp
chr11 89402656 89402656 1 + G A SKCM 89402653 + 89402633 89402673 41 CAATGTTGGACCTGGCTTTACTGGAAACTTTTCTACACAGT CAATGTTGGACCTGGCTTTACTGAAAACTTTTCTACACAGT < 41bp 0.741803533547417 0.539877713790777 0.057914823 0.06903419 prediction 0.403851639513279 Functional Loss - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89402653 chr11:89402656 . . 0 24 hm5C_associated_SNPs_97243 0 0 0 0 2 FOLH1B chr11:89402671 5'GT 89402671 Upstream 16bp
chr13 50092216 50092216 1 + G A BLCA 50092213 + 50092193 50092233 41 TGTGATTTAAAAAACTGTAACAAGAATTACCACTTTTTCTG TGTGATTTAAAAAACTGTAACAAAAATTACCACTTTTTCTG < 41bp 0.812951610012842 0.611027582199647 0.48704273 0.25273108 prediction 0.403848055626388 Functional Loss - PHF11;SETDB2-PHF11 ENSG00000136147 CDS Human protein_coding chr13:50092213 chr13:50092216 synonymous SNV . 0 24 hm5C_associated_SNPs_97244 0 0 0 0 2 PHF11;SETDB2-PHF11 chr13:50092154 3'AG 50092154 Downstream 63bp
chr13 50092216 50092216 1 + G A BLCA 50092213 + 50092193 50092233 41 TGTGATTTAAAAAACTGTAACAAGAATTACCACTTTTTCTG TGTGATTTAAAAAACTGTAACAAAAATTACCACTTTTTCTG < 41bp 0.812951610012842 0.611027582199647 0.48704273 0.25273108 prediction 0.403848055626388 Functional Loss - PHF11;SETDB2-PHF11 ENSG00000136147 CDS Human protein_coding chr13:50092213 chr13:50092216 synonymous SNV . 0 24 hm5C_associated_SNPs_97244 0 0 0 0 2 PHF11;SETDB2-PHF11 chr13:50092287 5'GT 50092287 Upstream 72bp
chr12 100606103 100606103 1 + G T STAD 100606101 + 100606081 100606121 41 AAGATGTATGCTATGTGTCTCAGGATTTTTATAGAGACATG AAGATGTATGCTATGTGTCTCATGATTTTTATAGAGACATG < 41bp 0.701921193422827 0.37508317452634 0.87625396 0.36554328 prediction 0.403842386845653 Functional Loss - ACTR6 ENSG00000075089 CDS Human protein_coding chr12:100606101 chr12:100606103 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_97249 0 0 1 0 2 ACTR6 chr12:100606034 3'AG 100606034 Downstream 70bp
chr12 100606103 100606103 1 + G T STAD 100606101 + 100606081 100606121 41 AAGATGTATGCTATGTGTCTCAGGATTTTTATAGAGACATG AAGATGTATGCTATGTGTCTCATGATTTTTATAGAGACATG < 41bp 0.701921193422827 0.37508317452634 0.87625396 0.36554328 prediction 0.403842386845653 Functional Loss - ACTR6 ENSG00000075089 CDS Human protein_coding chr12:100606101 chr12:100606103 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_97249 0 0 1 0 2 ACTR6 chr12:100606132 5'GT 100606132 Upstream 30bp
chr6 116953397 116953397 1 + G A UCEC 116953394 + 116953374 116953414 41 TTTGAAAATTTCTACATAGGCTGGGGTCATAAGTATAGTCC TTTGAAAATTTCTACATAGGCTGAGGTCATAAGTATAGTCC < 41bp 0.780140661981477 0.57822681788922 0.23725694 0.056301355 prediction 0.403827688184514 Functional Loss - RSPH4A ENSG00000111834 CDS Human protein_coding chr6:116953394 chr6:116953397 stopgain 1.000 1 24 hm5C_associated_SNPs_97254 0 0 1 2 1 RSPH4A chr6:116953370 3'AG 116953370 Downstream 28bp
chr3 108074150 108074150 1 + G T UCEC 108074148 + 108074128 108074168 41 TAACAGCCCACTGAATATTACAGGATCAAATTCATCTTATG TAACAGCCCACTGAATATTACATGATCAAATTCATCTTATG < 41bp 0.701911682345573 0.363716545128207 0.40254024 0.085755736 prediction 0.403823364691147 Functional Loss - HHLA2 ENSG00000114455 CDS Human protein_coding chr3:108074148 chr3:108074150 stopgain 0.994 0 23 hm5C_associated_SNPs_97258 0 0 0 0 1 HHLA2 chr3:108074228 5'GT 108074228 Upstream 79bp
chr11 46341984 46341984 1 + C T PAAD 46341982 + 46341962 46342002 41 ATGATCACCTGGACAGCACCCACGAGACCACCAAGTACCTG ATGATCACCTGGACAGCACCCATGAGACCACCAAGTACCTG < 41bp 0.87192944838329 0.670018197341243 0.05497518 0.051458746 prediction 0.403822502084092 Functional Loss - CREB3L1 ENSG00000157613 CDS Human protein_coding chr11:46341982 chr11:46341984 synonymous SNV . 0 23 hm5C_associated_SNPs_97260 0 0 0 0 1 CREB3L1 chr11:46342079 5'GT 46342079 Upstream 96bp
chr3 9948721 9948721 1 + C T UCEC 9948718 + 9948698 9948738 41 ATATCTTCAGGCCCTGAGGTCAGCGTGCGTCTTTGTCACCA ATATCTTCAGGCCCTGAGGTCAGTGTGCGTCTTTGTCACCA < 41bp 0.701907042910502 0.490785526575114 0.87738466 0.56505865 prediction 0.403814085821005 Functional Loss - IL17RE ENSG00000163701 CDS Human protein_coding chr3:9948718 chr3:9948721 synonymous SNV . 0 24 hm5C_associated_SNPs_97261 0 0 1 0 2 IL17RE chr3:9948645 3'AG 9948645 Downstream 77bp
chr3 9948721 9948721 1 + C T UCEC 9948718 + 9948698 9948738 41 ATATCTTCAGGCCCTGAGGTCAGCGTGCGTCTTTGTCACCA ATATCTTCAGGCCCTGAGGTCAGTGTGCGTCTTTGTCACCA < 41bp 0.701907042910502 0.490785526575114 0.87738466 0.56505865 prediction 0.403814085821005 Functional Loss - IL17RE ENSG00000163701 CDS Human protein_coding chr3:9948718 chr3:9948721 synonymous SNV . 0 24 hm5C_associated_SNPs_97261 0 0 1 0 2 IL17RE chr3:9948784 5'GT 9948784 Upstream 64bp
chr15 25451265 25451265 1 + G A SKCM 25451262 + 25451242 25451282 41 CAGAGGAAGACCCCGTGGCTCTGGGCCAGTGTGCGTCAGCC CAGAGGAAGACCCCGTGGCTCTGAGCCAGTGTGCGTCAGCC < 41bp 0.796447440965074 0.594542194585367 0.7161917 0.48576936 prediction 0.403810492759414 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25451262 chr15:25451265 . . 0 24 hm5C_associated_SNPs_97262 0 0 1 0 1 SNHG14 chr15:25451347 5'GT 25451347 Upstream 83bp
chr20 18505080 18505080 1 + G T LUSC 18505077 + 18505057 18505097 41 CTGTTTTTCTTTGCCCAAAGCGAGGTGCTCAGTCCCCTCTG CTGTTTTTCTTTGCCCAAAGCGATGTGCTCAGTCCCCTCTG < 41bp 0.70190339427618 0.295201836735697 0.951235 0.5324965 prediction 0.40380678855236 Functional Loss - SEC23B ENSG00000101310 CDS Human protein_coding chr20:18505077 chr20:18505080 nonsynonymous SNV 0.986 3 24 hm5C_associated_SNPs_97265 0 0 1 0 1 SEC23B chr20:18505077 3'AG 18505077 Downstream 4bp
chr19 11144518 11144518 1 + G A BLCA 11144515 + 11144495 11144535 41 CTCCGCCAGCGGGCGTCAACCCCGACTTGGAGGAGCCACCT CTCCGCCAGCGGGCGTCAACCCCAACTTGGAGGAGCCACCT < 41bp 0.781452613134749 0.579550258827739 0.25078434 0.28832132 prediction 0.40380470861402 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11144515 chr19:11144518 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_97266 0 0 0 0 2 SMARCA4 chr19:11144443 3'AG 11144443 Downstream 76bp
chr19 11144518 11144518 1 + G A BLCA 11144515 + 11144495 11144535 41 CTCCGCCAGCGGGCGTCAACCCCGACTTGGAGGAGCCACCT CTCCGCCAGCGGGCGTCAACCCCAACTTGGAGGAGCCACCT < 41bp 0.781452613134749 0.579550258827739 0.25078434 0.28832132 prediction 0.40380470861402 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11144515 chr19:11144518 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_97266 0 0 0 0 2 SMARCA4 chr19:11144541 5'GT 11144541 Upstream 24bp
chr3 69986987 69986987 1 + C T COAD 69986985 + 69986965 69987005 41 ATGTTCAGGTGCAGACCCACCTCGAAAACCCCACCAAGTAC ATGTTCAGGTGCAGACCCACCTTGAAAACCCCACCAAGTAC < 41bp 0.883526209084988 0.68163610752881 0.9489318 0.2479294 prediction 0.403780203112357 Functional Loss - MITF ENSG00000187098 CDS Human protein_coding chr3:69986985 chr3:69986987 synonymous SNV . 0 23 hm5C_associated_SNPs_97271 0 0 1 0 2 MITF chr3:69986973 3'AG 69986973 Downstream 15bp
chr3 69986987 69986987 1 + C T COAD 69986985 + 69986965 69987005 41 ATGTTCAGGTGCAGACCCACCTCGAAAACCCCACCAAGTAC ATGTTCAGGTGCAGACCCACCTTGAAAACCCCACCAAGTAC < 41bp 0.883526209084988 0.68163610752881 0.9489318 0.2479294 prediction 0.403780203112357 Functional Loss - MITF ENSG00000187098 CDS Human protein_coding chr3:69986985 chr3:69986987 synonymous SNV . 0 23 hm5C_associated_SNPs_97271 0 0 1 0 2 MITF chr3:69987032 5'GT 69987032 Upstream 46bp
chr11 59857197 59857197 1 + C T SKCM 59857194 + 59857174 59857214 41 ATTTGAAGTCTTGGAAATATCTCCCCAGGAAGTATCTTCAG ATTTGAAGTCTTGGAAATATCTCTCCAGGAAGTATCTTCAG < 41bp 0.701888158908746 0.486277041575281 0.058818877 0.233008 prediction 0.403776317817491 Functional Loss - MS4A2 ENSG00000149534 CDS Human protein_coding chr11:59857194 chr11:59857197 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_97272 0 0 0 0 1 MS4A2 chr11:59857294 5'GT 59857294 Upstream 98bp
chr11 63986763 63986763 1 + G A STAD 63986760 + 63986740 63986780 41 GACACAGCTGTATGAGCAGGCCCGGTGGGACCTGCTGCTGG GACACAGCTGTATGAGCAGGCCCAGTGGGACCTGCTGCTGG < 41bp 0.701887420095038 0.455402707186015 0.2910141 0.38824642 prediction 0.403774840190076 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63986760 chr11:63986763 nonsynonymous SNV 0.968 4 24 hm5C_associated_SNPs_97274 0 0 1 0 2 FERMT3 chr11:63986723 3'AG 63986723 Downstream 41bp
chr11 63986763 63986763 1 + G A STAD 63986760 + 63986740 63986780 41 GACACAGCTGTATGAGCAGGCCCGGTGGGACCTGCTGCTGG GACACAGCTGTATGAGCAGGCCCAGTGGGACCTGCTGCTGG < 41bp 0.701887420095038 0.455402707186015 0.2910141 0.38824642 prediction 0.403774840190076 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63986760 chr11:63986763 nonsynonymous SNV 0.968 4 24 hm5C_associated_SNPs_97274 0 0 1 0 2 FERMT3 chr11:63986830 5'GT 63986830 Upstream 68bp
chr12 104337556 104337556 1 + C T UCEC 104337553 + 104337533 104337573 41 GTCTCAGCGCCTGACAGAATCTCCGTGTGCTTTGGTGGCCA GTCTCAGCGCCTGACAGAATCTCTGTGTGCTTTGGTGGCCA < 41bp 0.80981951186089 0.607933541725361 0.86457837 0.20576224 prediction 0.403771940271056 Functional Loss - HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104337553 chr12:104337556 nonsynonymous SNV 0.918 4 24 hm5C_associated_SNPs_97276 0 0 1 0 2 HSP90B1 chr12:104337516 3'AG 104337516 Downstream 41bp
chr12 104337556 104337556 1 + C T UCEC 104337553 + 104337533 104337573 41 GTCTCAGCGCCTGACAGAATCTCCGTGTGCTTTGGTGGCCA GTCTCAGCGCCTGACAGAATCTCTGTGTGCTTTGGTGGCCA < 41bp 0.80981951186089 0.607933541725361 0.86457837 0.20576224 prediction 0.403771940271056 Functional Loss - HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104337553 chr12:104337556 nonsynonymous SNV 0.918 4 24 hm5C_associated_SNPs_97276 0 0 1 0 2 HSP90B1 chr12:104337652 5'GT 104337652 Upstream 97bp
chr22 25599779 25599779 1 + G T OV 25599776 + 25599756 25599796 41 TCCGCGGGGAGCAGTTTGTTCTGGAGAAGGGGGATTATCCT TCCGCGGGGAGCAGTTTGTTCTGTAGAAGGGGGATTATCCT < 41bp 0.940577965056024 0.738697726726938 0.7740916 0.42269695 prediction 0.403760476658173 Functional Loss - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25599776 chr22:25599779 stopgain 0.992 1 24 hm5C_associated_SNPs_97280 0 0 0 0 2 CRYBB3 chr22:25599730 3'AG 25599730 Downstream 50bp
chr22 25599779 25599779 1 + G T OV 25599776 + 25599756 25599796 41 TCCGCGGGGAGCAGTTTGTTCTGGAGAAGGGGGATTATCCT TCCGCGGGGAGCAGTTTGTTCTGTAGAAGGGGGATTATCCT < 41bp 0.940577965056024 0.738697726726938 0.7740916 0.42269695 prediction 0.403760476658173 Functional Loss - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25599776 chr22:25599779 stopgain 0.992 1 24 hm5C_associated_SNPs_97280 0 0 0 0 2 CRYBB3 chr22:25599862 5'GT 25599862 Upstream 84bp
chr3 158015851 158015851 1 + G A CESC 158015848 + 158015828 158015868 41 GGAATCTGGAAACATCAAAGCTGGATTAGAACATCTGGTAA GGAATCTGGAAACATCAAAGCTGAATTAGAACATCTGGTAA < 41bp 0.714686508018244 0.512807761604668 0.25683415 0.124234825 prediction 0.40375749282715 Functional Loss - RSRC1 ENSG00000174891 CDS Human protein_coding chr3:158015848 chr3:158015851 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_97282 0 0 1 0 2 RSRC1 chr3:158015828 3'AG 158015828 Downstream 24bp
chr3 158015851 158015851 1 + G A CESC 158015848 + 158015828 158015868 41 GGAATCTGGAAACATCAAAGCTGGATTAGAACATCTGGTAA GGAATCTGGAAACATCAAAGCTGAATTAGAACATCTGGTAA < 41bp 0.714686508018244 0.512807761604668 0.25683415 0.124234825 prediction 0.40375749282715 Functional Loss - RSRC1 ENSG00000174891 CDS Human protein_coding chr3:158015848 chr3:158015851 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_97282 0 0 1 0 2 RSRC1 chr3:158015864 5'GT 158015864 Upstream 14bp
chr11 47183076 47183076 1 + C T STAD 47183073 + 47183053 47183093 41 CCAGTCCAGAGGCCAGTTGCCTGCCTTCCCGGACCCCTCCC CCAGTCCAGAGGCCAGTTGCCTGTCTTCCCGGACCCCTCCC < 41bp 0.70763398898297 0.505760142620481 0.21702969 0.06537059 prediction 0.403747692724979 Functional Loss - C11orf49 ENSG00000149179 CDS Human protein_coding chr11:47183073 chr11:47183076 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_97287 0 0 1 0 2 C11orf49 chr11:47182997 3'AG 47182997 Downstream 80bp
chr11 47183076 47183076 1 + C T STAD 47183073 + 47183053 47183093 41 CCAGTCCAGAGGCCAGTTGCCTGCCTTCCCGGACCCCTCCC CCAGTCCAGAGGCCAGTTGCCTGTCTTCCCGGACCCCTCCC < 41bp 0.70763398898297 0.505760142620481 0.21702969 0.06537059 prediction 0.403747692724979 Functional Loss - C11orf49 ENSG00000149179 CDS Human protein_coding chr11:47183073 chr11:47183076 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_97287 0 0 1 0 2 C11orf49 chr11:47183015 3'AG 47183015 Downstream 62bp
chr2 187466848 187466848 1 + C T STAD 187466845 + 187466825 187466865 41 AATGTGACTGGTCTTCTACCCGCCGGTGCCAGCCAATTGAA AATGTGACTGGTCTTCTACCCGCTGGTGCCAGCCAATTGAA < 41bp 0.761202487155444 0.559331371049033 0.10572258 0.27429727 prediction 0.403742232212823 Functional Loss - ITGAV ENSG00000138448 CDS Human protein_coding chr2:187466845 chr2:187466848 nonsynonymous SNV 0.933 1 24 hm5C_associated_SNPs_97288 0 0 1 0 1 ITGAV chr2:187466878 5'GT 187466878 Upstream 31bp
chr16 24902200 24902200 1 + G A BLCA 24902197 + 24902177 24902217 41 CTCTGAATTCTAGGTTTTGCCGCGGTTGGTGGGATGGAAGG CTCTGAATTCTAGGTTTTGCCGCAGTTGGTGGGATGGAAGG < 41bp 0.818306129968687 0.616435603871917 0.80291694 0.31294465 prediction 0.403741052193539 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24902197 chr16:24902200 synonymous SNV . 0 24 hm5C_associated_SNPs_97289 0 0 0 0 1 SLC5A11 chr16:24902190 3'AG 24902190 Downstream 11bp
chr1 231475572 231475572 1 + C T UCEC 231475569 + 231475549 231475589 41 GGAATGTGTTCCATCCGTCTCAGCGAACCCCTTTTGAAGTT GGAATGTGTTCCATCCGTCTCAGTGAACCCCTTTTGAAGTT < 41bp 0.753116176127738 0.551247174766612 0.3793904 0.18223 prediction 0.403738002722252 Functional Loss - SPRTN ENSG00000010072 CDS Human protein_coding chr1:231475569 chr1:231475572 synonymous SNV . 0 24 hm5C_associated_SNPs_97293 0 0 1 0 2 SPRTN chr1:231475515 3'AG 231475515 Downstream 58bp
chr1 231475572 231475572 1 + C T UCEC 231475569 + 231475549 231475589 41 GGAATGTGTTCCATCCGTCTCAGCGAACCCCTTTTGAAGTT GGAATGTGTTCCATCCGTCTCAGTGAACCCCTTTTGAAGTT < 41bp 0.753116176127738 0.551247174766612 0.3793904 0.18223 prediction 0.403738002722252 Functional Loss - SPRTN ENSG00000010072 CDS Human protein_coding chr1:231475569 chr1:231475572 synonymous SNV . 0 24 hm5C_associated_SNPs_97293 0 0 1 0 2 SPRTN chr1:231475614 5'GT 231475614 Upstream 43bp
chr8 37914654 37914654 1 + G T HNSC 37914650 + 37914630 37914670 41 GATGGAGTGTCGGAACTCACCTGTGACCAAAACACCCCCAA GATGGAGTGTCGGAACTCACCTGTTACCAAAACACCCCCAA < 41bp 0.705886987732158 0.50401829699933 0.28403908 0.1499469 prediction 0.403737381465656 Functional Loss - EIF4EBP1 ENSG00000187840 CDS Human protein_coding chr8:37914650 chr8:37914654 synonymous SNV . 0 25 hm5C_associated_SNPs_97294 0 0 1 0 1 EIF4EBP1 chr8:37914599 3'AG 37914599 Downstream 56bp
chr17 9549429 9549429 1 + G A UCEC 9549426 + 9549406 9549446 41 GCGCTCTGGACTCGCGAATACACGCCCCAACTTTCCGCGGA GCGCTCTGGACTCGCGAATACACACCCCAACTTTCCGCGGA < 41bp 0.701868137074952 0.453734841086941 0.17696854 0.05736956 prediction 0.403736274149904 Functional Loss - USP43 ENSG00000154914 CDS Human protein_coding chr17:9549426 chr17:9549429 synonymous SNV . 0 24 hm5C_associated_SNPs_97295 0 0 0 0 1 USP43 chr17:9549453 5'GT 9549453 Upstream 25bp
chr7 154585908 154585908 1 + C T UCEC 154585906 + 154585886 154585926 41 GACGCCACCACGGGGGTCTGCACGAAGGTACGCGGGGCTGT GACGCCACCACGGGGGTCTGCATGAAGGTACGCGGGGCTGT < 41bp 0.740514631965732 0.538654362084889 0.50348043 0.44646505 prediction 0.403720539761686 Functional Loss - DPP6 ENSG00000130226 CDS Human protein_coding chr7:154585906 chr7:154585908 nonsynonymous SNV 0.971 4 23 hm5C_associated_SNPs_97300 0 0 0 0 1 DPP6 chr7:154585912 5'GT 154585912 Upstream 5bp
chr7 107559523 107559523 1 + T C UCEC 107559522 + 107559502 107559542 41 AGCATCCTGTGAAGATATAGCTAGAGTCTGTCATGCACATC AGCATCCTGTGAAGATATAGCCAGAGTCTGTCATGCACATC < 41bp 0.828956022716927 0.627097286780714 0.075410515 0.33793366 prediction 0.403717471872427 Functional Loss - DLD ENSG00000091140 CDS Human protein_coding chr7:107559522 chr7:107559523 synonymous SNV . 0 22 hm5C_associated_SNPs_97304 0 0 1 0 1 DLD chr7:107559544 5'GT 107559544 Upstream 22bp
chr1 183177060 183177060 1 + G A SKCM 183177057 + 183177037 183177077 41 CCAGGCAGTGTATCTTTGATCGGGAACTTCACAGACAAACT CCAGGCAGTGTATCTTTGATCGGAAACTTCACAGACAAACT < 41bp 0.823459731433189 0.621604069253168 0.8730992 0.7865343 prediction 0.403711324360041 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183177057 chr1:183177060 nonsynonymous SNV 0.081 0 24 hm5C_associated_SNPs_97307 0 0 0 0 1 LAMC2 chr1:183177016 3'AG 183177016 Downstream 45bp
chr13 45841411 45841411 1 + G A OV 45841408 + 45841388 45841428 41 GAAAGAAGACGGAAAGCGAGCTCGAGCTGATAAACAACATG GAAAGAAGACGGAAAGCGAGCTCAAGCTGATAAACAACATG < 41bp 0.77037885098962 0.568524284934905 0.10629806 0.07963425 prediction 0.403709132109429 Functional Loss - GTF2F2 ENSG00000188342 CDS Human protein_coding chr13:45841408 chr13:45841411 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_97310 0 0 1 0 1 GTF2F2 chr13:45841368 3'AG 45841368 Downstream 44bp
chr15 25458649 25458649 1 + G T LUAD 25458647 + 25458627 25458667 41 TTGCATTGGGCCCAATGGCCCTGGGCCAGTGTCTGTCAGCC TTGCATTGGGCCCAATGGCCCTTGGCCAGTGTCTGTCAGCC < 41bp 0.701853192521366 0.365213574986701 0.78209305 0.1377019 prediction 0.403706385042732 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25458647 chr15:25458649 . . 0 23 hm5C_associated_SNPs_97312 0 0 0 0 1 SNHG14 chr15:25458737 5'GT 25458737 Upstream 89bp
chr14 57741563 57741563 1 + G A rs10137359 57741560 + 57741540 57741580 41 AATCCATGCAATATGATAAACAGGGTATAGCAGATACATGG AATCCATGCAATATGATAAACAGAGTATAGCAGATACATGG < 41bp 0.74472656879839 0.542875179899641 0.7145866 0.4413416 prediction 0.403702777797499 Functional Loss - AP5M1 ENSG00000053770 CDS Human protein_coding chr14:57741560 chr14:57741563 nonsynonymous SNV 0.969 1 24 hm5C_associated_SNPs_97313 0 0 0 0 1 AP5M1 chr14:57741607 5'GT 57741607 Upstream 45bp
chr12 93881283 93881283 1 + G A UCEC 93881280 + 93881260 93881300 41 GATTATTTTGTAGCCTATCCCTCGGCCAGATCCTGTGCATA GATTATTTTGTAGCCTATCCCTCAGCCAGATCCTGTGCATA < 41bp 0.701850653521133 0.472250747544109 0.13142025 0.07859665 prediction 0.403701307042265 Functional Loss - MRPL42 ENSG00000198015 CDS Human protein_coding chr12:93881280 chr12:93881283 nonsynonymous SNV 0.826 0 24 hm5C_associated_SNPs_97314 0 0 1 0 1 MRPL42 chr12:93881273 3'AG 93881273 Downstream 11bp
chr19 50923207 50923207 1 + G A SKCM 50923204 + 50923184 50923224 41 TGTGTCTCTCCCCCTCCAGGCTCGACGGGCCACACTTCAGC TGTGTCTCTCCCCCTCCAGGCTCAACGGGCCACACTTCAGC < 41bp 0.825600855872118 0.623750856791021 0.42193332 0.9237523 prediction 0.403699998162194 Functional Loss - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50923204 chr19:50923207 nonsynonymous SNV 0.496 3 24 hm5C_associated_SNPs_97315 0 0 0 0 2 SPIB chr19:50923203 3'AG 50923203 Downstream 5bp
chr19 50923207 50923207 1 + G A SKCM 50923204 + 50923184 50923224 41 TGTGTCTCTCCCCCTCCAGGCTCGACGGGCCACACTTCAGC TGTGTCTCTCCCCCTCCAGGCTCAACGGGCCACACTTCAGC < 41bp 0.825600855872118 0.623750856791021 0.42193332 0.9237523 prediction 0.403699998162194 Functional Loss - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50923204 chr19:50923207 nonsynonymous SNV 0.496 3 24 hm5C_associated_SNPs_97315 0 0 0 0 2 SPIB chr19:50923230 5'GT 50923230 Upstream 24bp
chr1 203472098 203472098 1 + G A rs77566947 203472095 + 203472075 203472115 41 GACAACCTGCTGGATTCTATCCCGGGGCCTTTGCCCCTGAG GACAACCTGCTGGATTCTATCCCAGGGCCTTTGCCCCTGAG < 41bp 0.832874165287335 0.63102734584923 0.9383495 0.8607082 prediction 0.403693638876209 Functional Loss - OPTC ENSG00000188770 CDS Human protein_coding chr1:203472095 chr1:203472098 synonymous SNV . 0 24 hm5C_associated_SNPs_97318 0 0 0 0 2 OPTC chr1:203472042 3'AG 203472042 Downstream 57bp
chr1 203472098 203472098 1 + G A rs77566947 203472095 + 203472075 203472115 41 GACAACCTGCTGGATTCTATCCCGGGGCCTTTGCCCCTGAG GACAACCTGCTGGATTCTATCCCAGGGCCTTTGCCCCTGAG < 41bp 0.832874165287335 0.63102734584923 0.9383495 0.8607082 prediction 0.403693638876209 Functional Loss - OPTC ENSG00000188770 CDS Human protein_coding chr1:203472095 chr1:203472098 synonymous SNV . 0 24 hm5C_associated_SNPs_97318 0 0 0 0 2 OPTC chr1:203472137 5'GT 203472137 Upstream 40bp
chr2 47045368 47045368 1 + A C COAD 47045367 + 47045347 47045387 41 TCATGCCTGCAGTTCCAGCCCAGGGTGAGGTTGAAACACTT TCATGCCTGCAGTTCCAGCCCCGGGTGAGGTTGAAACACTT < 41bp 0.701843026349322 0.433033919636646 0.75077814 0.58707106 prediction 0.403686052698643 Functional Loss - LINC01118 ENSG00000222005 CDS Human lincRNA chr2:47045367 chr2:47045368 synonymous SNV . 0 22 hm5C_associated_SNPs_97320 0 0 0 0 1 LINC01118 chr2:47045319 3'AG 47045319 Downstream 50bp
chr2 27730940 27730940 1 + T C rs1260326 27730939 + 27730919 27730959 41 GCACCGTGGGTCAGACCTTGCTGGTGAGAGTCCAGCCGTGA GCACCGTGGGTCAGACCTTGCCGGTGAGAGTCCAGCCGTGA < 41bp 0.812389250374084 0.610546528168172 0.3584717 0.67400104 prediction 0.403685444411826 Functional Loss - GCKR ENSG00000084734 CDS Human protein_coding chr2:27730939 chr2:27730940 nonsynonymous SNV 0.412 0 22 hm5C_associated_SNPs_97321 1 1 0 0 2 GCKR chr2:27730844 3'AG 27730844 Downstream 97bp
chr2 27730940 27730940 1 + T C rs1260326 27730939 + 27730919 27730959 41 GCACCGTGGGTCAGACCTTGCTGGTGAGAGTCCAGCCGTGA GCACCGTGGGTCAGACCTTGCCGGTGAGAGTCCAGCCGTGA < 41bp 0.812389250374084 0.610546528168172 0.3584717 0.67400104 prediction 0.403685444411826 Functional Loss - GCKR ENSG00000084734 CDS Human protein_coding chr2:27730939 chr2:27730940 nonsynonymous SNV 0.412 0 22 hm5C_associated_SNPs_97321 1 1 0 0 2 GCKR chr2:27730941 5'GT 27730941 Upstream 2bp
chr7 152550608 152550608 1 + G A UCEC 152550605 + 152550585 152550625 41 CCTGTGGAGGTCCAGGTGGTCACGCATCACATGCAGCGCTA CCTGTGGAGGTCCAGGTGGTCACACATCACATGCAGCGCTA < 41bp 0.813403869216672 0.611564122132314 0.59199 0.30829898 prediction 0.403679494168715 Functional Loss - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152550605 chr7:152550608 synonymous SNV . 0 24 hm5C_associated_SNPs_97324 0 0 1 0 2 ACTR3B chr7:152550579 3'AG 152550579 Downstream 30bp
chr7 152550608 152550608 1 + G A UCEC 152550605 + 152550585 152550625 41 CCTGTGGAGGTCCAGGTGGTCACGCATCACATGCAGCGCTA CCTGTGGAGGTCCAGGTGGTCACACATCACATGCAGCGCTA < 41bp 0.813403869216672 0.611564122132314 0.59199 0.30829898 prediction 0.403679494168715 Functional Loss - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152550605 chr7:152550608 synonymous SNV . 0 24 hm5C_associated_SNPs_97324 0 0 1 0 2 ACTR3B chr7:152550662 5'GT 152550662 Upstream 55bp
chr9 131904747 131904747 1 + G T COAD 131904743 + 131904723 131904763 41 GATGAAGACTGGCCCATTTGCAGAGCACTCCAACCAGCTGT GATGAAGACTGGCCCATTTGCAGATCACTCCAACCAGCTGT < 41bp 0.739493971976589 0.537656133067542 0.85075176 0.3040982 prediction 0.403675677818094 Functional Loss - PTPA ENSG00000119383 CDS Human protein_coding chr9:131904743 chr9:131904747 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_97325 0 0 1 0 2 PTPA chr9:131904724 3'AG 131904724 Downstream 24bp
chr9 131904747 131904747 1 + G T COAD 131904743 + 131904723 131904763 41 GATGAAGACTGGCCCATTTGCAGAGCACTCCAACCAGCTGT GATGAAGACTGGCCCATTTGCAGATCACTCCAACCAGCTGT < 41bp 0.739493971976589 0.537656133067542 0.85075176 0.3040982 prediction 0.403675677818094 Functional Loss - PTPA ENSG00000119383 CDS Human protein_coding chr9:131904743 chr9:131904747 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_97325 0 0 1 0 2 PTPA chr9:131904831 5'GT 131904831 Upstream 85bp
chr19 15164756 15164756 1 + G T STAD 15164754 + 15164734 15164774 41 AGCCCAAGGTGTACATCATACAGGCCTGTCGAGGAGGTGGG AGCCCAAGGTGTACATCATACATGCCTGTCGAGGAGGTGGG < 41bp 0.701837651298424 0.335906490660292 0.254341 0.15613371 prediction 0.403675302596849 Functional Loss - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15164754 chr19:15164756 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_97326 0 0 0 0 1 CASP14 chr19:15164769 5'GT 15164769 Upstream 14bp
chr5 14681660 14681660 1 + G A STAD 14681657 + 14681637 14681677 41 CACTGAGGGCCACGCTGTTCCAGGCCATGAGCCAGGCTGTG CACTGAGGGCCACGCTGTTCCAGACCATGAGCCAGGCTGTG < 41bp 0.701836708451201 0.45742173027106 0.53258115 0.32028306 prediction 0.403673416902402 Functional Loss - OTULIN ENSG00000154124 CDS Human protein_coding chr5:14681657 chr5:14681660 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_97327 0 0 1 0 2 OTULIN chr5:14681573 3'AG 14681573 Downstream 88bp
chr5 14681660 14681660 1 + G A STAD 14681657 + 14681637 14681677 41 CACTGAGGGCCACGCTGTTCCAGGCCATGAGCCAGGCTGTG CACTGAGGGCCACGCTGTTCCAGACCATGAGCCAGGCTGTG < 41bp 0.701836708451201 0.45742173027106 0.53258115 0.32028306 prediction 0.403673416902402 Functional Loss - OTULIN ENSG00000154124 CDS Human protein_coding chr5:14681657 chr5:14681660 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_97327 0 0 1 0 2 OTULIN chr5:14681716 5'GT 14681716 Upstream 57bp
chr8 38835575 38835575 1 + C T STAD 38835572 + 38835552 38835592 41 TTCTCTGCAGAACACAGCTACTGCAGGAATTGTCAGCACCA TTCTCTGCAGAACACAGCTACTGTAGGAATTGTCAGCACCA < 41bp 0.701833979031122 0.467959396438707 0.18314365 0.076821715 prediction 0.403667958062244 Functional Loss - HTRA4 ENSG00000169495 CDS Human protein_coding chr8:38835572 chr8:38835575 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_97328 0 0 0 0 1 HTRA4 chr8:38835666 5'GT 38835666 Upstream 92bp
chr10 88419680 88419680 1 + G T SARC 88419676 + 88419656 88419696 41 CTCCAGACCTTCGGGGCCTGCAAGGGCAATGGCGAGTCCCT CTCCAGACCTTCGGGGCCTGCAAGTGCAATGGCGAGTCCCT < 41bp 0.748395129990688 0.546568276224393 0.8047544 0.8132749 prediction 0.40365370753259 Functional Loss - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88419676 chr10:88419680 nonsynonymous SNV 0.355 2 25 hm5C_associated_SNPs_97332 0 0 0 0 1 OPN4 chr10:88419652 3'AG 88419652 Downstream 29bp
chr3 195447954 195447954 1 + G T UCEC 195447952 + 195447932 195447972 41 TGGGGTCTCTGGGAGCTCTGCAGGTAAGGAGGCCTAGAAGG TGGGGTCTCTGGGAGCTCTGCATGTAAGGAGGCCTAGAAGG < 41bp 0.701824712861968 0.342078397330367 0.9115416 0.8956941 prediction 0.403649425723936 Functional Loss - MUC20 ENSG00000176945 CDS Human protein_coding chr3:195447952 chr3:195447954 nonsynonymous SNV 0.276 3 23 hm5C_associated_SNPs_97333 0 0 0 0 1 MUC20 chr3:195447954 5'GT 195447954 Upstream 1bp
chrX 67939128 67939128 1 + G A CESC 67939125 + 67939105 67939145 41 CCAGCCTCAACTCAGAGTCGCTGGAGATCAACCGGCAGTTT CCAGCCTCAACTCAGAGTCGCTGAAGATCAACCGGCAGTTT < 41bp 0.701822139170071 0.442992439445744 0.21650818 0.06484449 prediction 0.403644278340142 Functional Loss - STARD8 ENSG00000130052 CDS Human protein_coding chrX:67939125 chrX:67939128 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_97335 0 0 0 0 1 STARD8 chrX:67939067 3'AG 67939067 Downstream 62bp
chr7 100198387 100198387 1 - G A rs148604938 100198390 - 100198370 100198410 41 CCTACGATCTCCTTCATCTTCTCCGTGCGGTCCTGCAACGT CCTACGATCTCCTTCATCTTCTCTGTGCGGTCCTGCAACGT < 41bp 0.753211495185066 0.551391780512289 0.17691311 0.134671 prediction 0.403639429345554 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100198390 chr7:100198387 synonymous SNV . 0 24 hm5C_associated_SNPs_97337 0 0 0 0 2 FBXO24 chr7:100198346 5'GT 100198346 Upstream 42bp
chr7 100198387 100198387 1 - G A rs148604938 100198390 - 100198370 100198410 41 CCTACGATCTCCTTCATCTTCTCCGTGCGGTCCTGCAACGT CCTACGATCTCCTTCATCTTCTCTGTGCGGTCCTGCAACGT < 41bp 0.753211495185066 0.551391780512289 0.17691311 0.134671 prediction 0.403639429345554 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100198390 chr7:100198387 synonymous SNV . 0 24 hm5C_associated_SNPs_97337 0 0 0 0 2 FBXO24 chr7:100198475 3'AG 100198475 Downstream 89bp
chr14 99968607 99968607 1 + C T OV 99968605 + 99968585 99968625 41 TAGCAGTAGCAGTGATGTATCTCGCAGGACGTTTGTGCAAA TAGCAGTAGCAGTGATGTATCTTGCAGGACGTTTGTGCAAA < 41bp 0.701817213415895 0.398292172064027 0.07738191 0.061865836 prediction 0.40363442683179 Functional Loss - CCNK ENSG00000090061 CDS Human protein_coding chr14:99968605 chr14:99968607 synonymous SNV . 0 23 hm5C_associated_SNPs_97340 0 0 1 0 1 CCNK chr14:99968544 3'AG 99968544 Downstream 64bp
chr8 11219248 11219248 1 + G A UCEC 11219245 + 11219225 11219265 41 CCTCTCCCCGGAACCCAACCCCCGATCTCTGTATTCAGAGA CCTCTCCCCGGAACCCAACCCCCAATCTCTGTATTCAGAGA < 41bp 0.701816700962508 0.462607319574446 0.2964218 0.79530555 prediction 0.403633401925016 Functional Loss - TDH ENSG00000154316 ncRNA_exonic Human transcribed_unitary_pseudogene chr8:11219245 chr8:11219248 . . 0 24 hm5C_associated_SNPs_97341 0 0 0 0 1 TDH chr8:11219316 5'GT 11219316 Upstream 69bp
chr3 32200543 32200543 1 + C T COAD 32200541 + 32200521 32200561 41 TGCGGGGTGGCCGACCTGATCACCACCTGTTACGGAGGGCG TGCGGGGTGGCCGACCTGATCATCACCTGTTACGGAGGGCG < 41bp 0.875268222472222 0.673452298493703 0.22684324 0.13364053 prediction 0.403631847957039 Functional Loss - GPD1L ENSG00000152642 CDS Human protein_coding chr3:32200541 chr3:32200543 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_97342 0 0 0 0 1 GPD1L chr3:32200601 5'GT 32200601 Upstream 59bp
chr5 14681611 14681611 1 + G T OV 14681609 + 14681589 14681629 41 CTCAGAAGTTCACCTCCATACGGCGAGTCCGTGGTGATAAT CTCAGAAGTTCACCTCCATACGTCGAGTCCGTGGTGATAAT < 41bp 0.701815916851119 0.358099773751247 0.16876614 0.053003043 prediction 0.403631833702238 Functional Loss - OTULIN ENSG00000154124 CDS Human protein_coding chr5:14681609 chr5:14681611 synonymous SNV . 0 23 hm5C_associated_SNPs_97343 0 0 1 0 1 OTULIN chr5:14681573 3'AG 14681573 Downstream 39bp
chr5 32072373 32072373 1 + G A LUAD 32072370 + 32072350 32072390 41 TTCTGAGGACGAGGATCACCCGGGAAGTGGCTGCAGCACGT TTCTGAGGACGAGGATCACCCGGAAAGTGGCTGCAGCACGT < 41bp 0.806811166058641 0.605000649006271 0.9049102 0.79217017 prediction 0.403621034104739 Functional Loss - PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32072370 chr5:32072373 nonsynonymous SNV 0.635 2 24 hm5C_associated_SNPs_97345 0 0 0 0 1 PDZD2 chr5:32072423 5'GT 32072423 Upstream 51bp
chr15 22382663 22382663 1 + G T LUAD 22382659 + 22382639 22382679 41 CAGCCCCCCTCTATTTATTTCTGGGCAACTTGGCCTTCCTG CAGCCCCCCTCTATTTATTTCTGGTCAACTTGGCCTTCCTG < 41bp 0.77051003685957 0.568699527664077 0.75605655 0.2522111 prediction 0.403621018390986 Functional Loss - OR4N4 ENSG00000183706 CDS Human protein_coding chr15:22382659 chr15:22382663 nonsynonymous SNV 0.938 2 25 hm5C_associated_SNPs_97346 0 0 0 0 1 OR4N4 chr15:22382742 5'GT 22382742 Upstream 80bp
chr5 148630930 148630930 1 + C T UCEC 148630927 + 148630907 148630947 41 CTGTCTCTTCTGCAGACACCCAGCGCAGACCTCTTCCACTA CTGTCTCTTCTGCAGACACCCAGTGCAGACCTCTTCCACTA < 41bp 0.740194688111748 0.538389092588987 0.059355527 0.08288866 prediction 0.403611191045523 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148630927 chr5:148630930 synonymous SNV . 0 24 hm5C_associated_SNPs_97348 0 0 1 0 2 ABLIM3 chr5:148630922 3'AG 148630922 Downstream 9bp
chr5 148630930 148630930 1 + C T UCEC 148630927 + 148630907 148630947 41 CTGTCTCTTCTGCAGACACCCAGCGCAGACCTCTTCCACTA CTGTCTCTTCTGCAGACACCCAGTGCAGACCTCTTCCACTA < 41bp 0.740194688111748 0.538389092588987 0.059355527 0.08288866 prediction 0.403611191045523 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148630927 chr5:148630930 synonymous SNV . 0 24 hm5C_associated_SNPs_97348 0 0 1 0 2 ABLIM3 chr5:148630982 5'GT 148630982 Upstream 53bp
chr17 48701284 48701284 1 + C T rs375919039 48701282 + 48701262 48701302 41 TTGCAGATGCAGCCCCACCCCACGGAGCTGCCAGGACCAGA TTGCAGATGCAGCCCCACCCCATGGAGCTGCCAGGACCAGA < 41bp 0.701804679970339 0.472862737145431 0.09440297 0.13655782 prediction 0.403609359940677 Functional Loss - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48701282 chr17:48701284 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_97349 0 0 0 0 1 CACNA1G chr17:48701268 3'AG 48701268 Downstream 17bp
chr17 48701285 48701285 1 + G A SKCM 48701282 + 48701262 48701302 41 TTGCAGATGCAGCCCCACCCCACGGAGCTGCCAGGACCAGA TTGCAGATGCAGCCCCACCCCACAGAGCTGCCAGGACCAGA < 41bp 0.701804679970339 0.498211460758849 0.09440297 0.05361998 prediction 0.403609359940677 Functional Loss - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48701282 chr17:48701285 synonymous SNV . 0 24 hm5C_associated_SNPs_97350 0 0 0 0 1 CACNA1G chr17:48701268 3'AG 48701268 Downstream 18bp
chr15 86807986 86807986 1 + G T UCEC 86807983 + 86807963 86808003 41 ACCAGCTCTGTGGTGGACTTCAAGATGATGGCATTTCCTGA ACCAGCTCTGTGGTGGACTTCAATATGATGGCATTTCCTGA < 41bp 0.701802590088048 0.349996331583614 0.6717188 0.3646109 prediction 0.403605180176097 Functional Loss - AGBL1 ENSG00000166748 CDS Human other chr15:86807983 chr15:86807986 nonsynonymous SNV 0.985 0 24 hm5C_associated_SNPs_97351 0 0 0 0 1 AGBL1 chr15:86808069 5'GT 86808069 Upstream 84bp
chr2 101087011 101087011 1 + C T BRCA 101087008 + 101086988 101087028 41 CCATCTACTGCTTCTGCATGCTACAGATTCCCTCCTCAGGT CCATCTACTGCTTCTGCATGCTATAGATTCCCTCCTCAGGT < 41bp 0.7142048321117 0.512404566779859 0.218521 0.120833516 prediction 0.403600530663682 Functional Loss - NMS ENSG00000204640 CDS Human protein_coding chr2:101087008 chr2:101087011 stopgain 0.840 0 24 hm5C_associated_SNPs_97353 0 0 0 0 1 NMS chr2:101087026 5'GT 101087026 Upstream 16bp
chr3 9974647 9974647 1 + G A SKCM 9974644 + 9974624 9974664 41 TTTTCTCCGGCAGCGGCCGCCAGGGGCCGCGCGGCTCTGCT TTTTCTCCGGCAGCGGCCGCCAGAGGCCGCGCGGCTCTGCT < 41bp 0.7943424114607 0.592543650792839 0.94840425 0.9456371 prediction 0.403597521335721 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9974644 chr3:9974647 synonymous SNV . 0 24 hm5C_associated_SNPs_97354 0 0 1 0 1 IL17RC chr3:9974637 3'AG 9974637 Downstream 11bp
chr14 100182497 100182497 1 + G C BLCA 100182493 + 100182473 100182513 41 GCTGAAGAGGGAGCCCAGGACGACGAGGGTCTGCTGGACAA GCTGAAGAGGGAGCCCAGGACGACCAGGGTCTGCTGGACAA < 41bp 0.701794073281869 0.394580997603916 0.38610157 0.20768455 prediction 0.403588146563737 Functional Loss - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100182493 chr14:100182497 nonsynonymous SNV 0.865 1 25 hm5C_associated_SNPs_97357 0 0 0 0 2 CYP46A1 chr14:100182474 3'AG 100182474 Downstream 24bp
chr14 100182497 100182497 1 + G C BLCA 100182493 + 100182473 100182513 41 GCTGAAGAGGGAGCCCAGGACGACGAGGGTCTGCTGGACAA GCTGAAGAGGGAGCCCAGGACGACCAGGGTCTGCTGGACAA < 41bp 0.701794073281869 0.394580997603916 0.38610157 0.20768455 prediction 0.403588146563737 Functional Loss - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100182493 chr14:100182497 nonsynonymous SNV 0.865 1 25 hm5C_associated_SNPs_97357 0 0 0 0 2 CYP46A1 chr14:100182536 5'GT 100182536 Upstream 40bp
chr2 33246017 33246017 1 + C T HNSC 33246014 + 33245994 33246034 41 GTCAGAATGGAGGGATGTGTCTCCGGCCACAACTCTGTGTG GTCAGAATGGAGGGATGTGTCTCTGGCCACAACTCTGTGTG < 41bp 0.735308982201905 0.533523658790157 0.26466554 0.06509486 prediction 0.403570646823495 Functional Loss - LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33246014 chr2:33246017 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_97365 0 0 1 0 1 LTBP1 chr2:33245976 3'AG 33245976 Downstream 42bp
chr19 48878997 48878997 1 + C T SKCM 48878994 + 48878974 48879014 41 GCCATCGCCTTCACCTTCTTCTCCATCCTTGTCTGGGTGAG GCCATCGCCTTCACCTTCTTCTCTATCCTTGTCTGGGTGAG < 41bp 0.770635709414762 0.568854962319157 0.9579917 0.9187252 prediction 0.40356149419121 Functional Loss - SYNGR4 ENSG00000105467 CDS Human protein_coding chr19:48878994 chr19:48878997 synonymous SNV . 0 24 hm5C_associated_SNPs_97367 0 0 0 0 1 SYNGR4 chr19:48879009 5'GT 48879009 Upstream 13bp
chr19 8495677 8495677 1 + C T SKCM 8495674 + 8495654 8495694 41 GGGCCCAGGACCACCTCCGGCTCCACAGCCAGCTGGAGGCC GGGCCCAGGACCACCTCCGGCTCTACAGCCAGCTGGAGGCC < 41bp 0.776437716557258 0.574657128606729 0.8591473 0.90317714 prediction 0.403561175901057 Functional Loss - MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8495674 chr19:8495677 nonsynonymous SNV 0.927 1 24 hm5C_associated_SNPs_97368 0 0 0 0 1 MARCH2 chr19:8495751 5'GT 8495751 Upstream 75bp
chr19 55331452 55331452 1 + G A LUAD 55331449 + 55331429 55331469 41 TGTCAGCTCCCAGTGATCCCCTGGACATCGTGGTCACAGGT TGTCAGCTCCCAGTGATCCCCTGAACATCGTGGTCACAGGT < 41bp 0.701779511153608 0.466358021683087 0.20735943 0.050369292 prediction 0.403559022307216 Functional Loss - KIR3DL1 ENSG00000167633 CDS Human protein_coding chr19:55331449 chr19:55331452 nonsynonymous SNV 0.004 2 24 hm5C_associated_SNPs_97369 0 0 0 0 1 KIR3DL1 chr19:55331467 5'GT 55331467 Upstream 16bp
chr12 93964440 93964440 1 + G A rs188780298 93964437 + 93964417 93964457 41 GAACCCGGGCGCTCAGCTGGCCCGGGTAGGGGGCAGGCTCC GAACCCGGGCGCTCAGCTGGCCCAGGTAGGGGGCAGGCTCC < 41bp 0.819187155080462 0.617408180869568 0.6611734 0.48118362 prediction 0.403557948421787 Functional Loss - SOCS2-AS1 ENSG00000246985 ncRNA_intronic Human processed_transcript chr12:93964437 chr12:93964440 . . 0 24 hm5C_associated_SNPs_97370 0 0 0 0 1 SOCS2-AS1 chr12:93964441 5'GT 93964441 Upstream 2bp
chr18 44013185 44013185 1 + G A UCEC 44013182 + 44013162 44013202 41 TTCAAAGGTCTCAGCATCCTCACGCTACCTCCTGCCGCCAC TTCAAAGGTCTCAGCATCCTCACACTACCTCCTGCCGCCAC < 41bp 0.701777418293689 0.488942423680895 0.33491236 0.13894358 prediction 0.403554836587378 Functional Loss - RNF165 ENSG00000141622 CDS Human protein_coding chr18:44013182 chr18:44013185 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_97371 0 0 0 0 1 RNF165 chr18:44013153 3'AG 44013153 Downstream 33bp
chrX 18912469 18912469 1 - G A LGG 18912471 - 18912451 18912491 41 ATGTCGAATCGGTGCTGAACCGCGTGCCGCAGCCCGAGTAC ATGTCGAATCGGTGCTGAACCGTGTGCCGCAGCCCGAGTAC < 41bp 0.865410963283877 0.663636230045668 0.32950956 0.2639836 prediction 0.403549466476419 Functional Loss - PHKA2 ENSG00000044446 CDS Human protein_coding chrX:18912471 chrX:18912469 synonymous SNV . 0 23 hm5C_associated_SNPs_97373 0 0 1 0 1 PHKA2 chrX:18912522 3'AG 18912522 Downstream 54bp
chr21 43852251 43852251 1 + G A MESO 43852248 + 43852228 43852268 41 AGAGCGTGCTGGTGGTTCGCCACGGGGAGAGAGTGGATCAG AGAGCGTGCTGGTGGTTCGCCACAGGGAGAGAGTGGATCAG < 41bp 0.83080688742878 0.629033428712483 0.78011143 0.7598449 prediction 0.403546917432594 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43852248 chr21:43852251 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_97374 0 0 0 0 2 UBASH3A chr21:43852212 3'AG 43852212 Downstream 40bp
chr21 43852251 43852251 1 + G A MESO 43852248 + 43852228 43852268 41 AGAGCGTGCTGGTGGTTCGCCACGGGGAGAGAGTGGATCAG AGAGCGTGCTGGTGGTTCGCCACAGGGAGAGAGTGGATCAG < 41bp 0.83080688742878 0.629033428712483 0.78011143 0.7598449 prediction 0.403546917432594 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43852248 chr21:43852251 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_97374 0 0 0 0 2 UBASH3A chr21:43852311 5'GT 43852311 Upstream 61bp
chr11 89421771 89421771 1 + G T STAD 89421769 + 89421749 89421789 41 AAGGATAAGCAAATTGGGATCTGGAAATGATTTTGAGGTGT AAGGATAAGCAAATTGGGATCTTGAAATGATTTTGAGGTGT < 41bp 0.701769934396779 0.389616889043471 0.45906025 0.9094435 prediction 0.403539868793559 Functional Loss - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89421769 chr11:89421771 . . 0 23 hm5C_associated_SNPs_97375 0 0 0 0 2 FOLH1B chr11:89421752 3'AG 89421752 Downstream 20bp
chr11 89421771 89421771 1 + G T STAD 89421769 + 89421749 89421789 41 AAGGATAAGCAAATTGGGATCTGGAAATGATTTTGAGGTGT AAGGATAAGCAAATTGGGATCTTGAAATGATTTTGAGGTGT < 41bp 0.701769934396779 0.389616889043471 0.45906025 0.9094435 prediction 0.403539868793559 Functional Loss - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89421769 chr11:89421771 . . 0 23 hm5C_associated_SNPs_97375 0 0 0 0 2 FOLH1B chr11:89421842 5'GT 89421842 Upstream 72bp
chr11 10517275 10517275 1 + G A SKCM 10517272 + 10517252 10517292 41 CGCTGGATCATCCAGGTGCCCCGGATTTAGTAAGTGAGGTG CGCTGGATCATCCAGGTGCCCCGAATTTAGTAAGTGAGGTG < 41bp 0.701769606362012 0.455279313387957 0.49020815 0.2666613 prediction 0.403539212724023 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10517272 chr11:10517275 synonymous SNV . 0 24 hm5C_associated_SNPs_97376 0 0 1 0 1 AMPD3 chr11:10517280 5'GT 10517280 Upstream 6bp
chr11 33079519 33079519 1 + G T CESC 33079517 + 33079497 33079537 41 TAGACTGAGAAACCAGATAACAGAAGTCTTGGATCTGGATC TAGACTGAGAAACCAGATAACATAAGTCTTGGATCTGGATC < 41bp 0.701769170156541 0.446809690160056 0.6317295 0.1747601 prediction 0.403538340313083 Functional Loss - TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33079517 chr11:33079519 stopgain 0.998 1 23 hm5C_associated_SNPs_97377 0 0 0 0 1 TCP11L1 chr11:33079465 3'AG 33079465 Downstream 55bp
chr2 24246992 24246992 1 + C T LUAD 24246989 + 24246969 24247009 41 TCGGGGTATAAGGCAGGGGTCTGCAAGCAAGCAGAGGAGGT TCGGGGTATAAGGCAGGGGTCTGTAAGCAAGCAGAGGAGGT < 41bp 0.701768933244419 0.488224293682022 0.9229913 0.89006877 prediction 0.403537866488837 Functional Loss - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24246989 chr2:24246992 synonymous SNV . 0 24 hm5C_associated_SNPs_97378 0 0 1 0 1 MFSD2B chr2:24246965 3'AG 24246965 Downstream 28bp
chr1 54423868 54423868 1 + G T LUSC 54423864 + 54423844 54423884 41 CTTGAGGAGATTAAGTCTTTCCGGGAGCTGACCTGCCTGGA CTTGAGGAGATTAAGTCTTTCCGGTAGCTGACCTGCCTGGA < 41bp 0.740261665236025 0.53849388623614 0.9172213 0.8861804 prediction 0.403535557999771 Functional Loss - LRRC42 ENSG00000116212 CDS Human protein_coding chr1:54423864 chr1:54423868 stopgain 1.000 1 25 hm5C_associated_SNPs_97380 0 0 0 0 2 LRRC42 chr1:54423822 3'AG 54423822 Downstream 47bp
chr1 54423868 54423868 1 + G T LUSC 54423864 + 54423844 54423884 41 CTTGAGGAGATTAAGTCTTTCCGGGAGCTGACCTGCCTGGA CTTGAGGAGATTAAGTCTTTCCGGTAGCTGACCTGCCTGGA < 41bp 0.740261665236025 0.53849388623614 0.9172213 0.8861804 prediction 0.403535557999771 Functional Loss - LRRC42 ENSG00000116212 CDS Human protein_coding chr1:54423864 chr1:54423868 stopgain 1.000 1 25 hm5C_associated_SNPs_97380 0 0 0 0 2 LRRC42 chr1:54423953 5'GT 54423953 Upstream 86bp
chr11 15257208 15257208 1 + G A SKCM 15257205 + 15257185 15257225 41 AGTGTGCCTCTGACATCATTCAGGAAAATGGTATGTCTTTG AGTGTGCCTCTGACATCATTCAGAAAAATGGTATGTCTTTG < 41bp 0.801499212714381 0.599731603700045 0.6512681 0.36980283 prediction 0.403535218028673 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15257205 chr11:15257208 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_97381 0 0 0 0 2 INSC chr11:15257148 3'AG 15257148 Downstream 61bp
chr11 15257208 15257208 1 + G A SKCM 15257205 + 15257185 15257225 41 AGTGTGCCTCTGACATCATTCAGGAAAATGGTATGTCTTTG AGTGTGCCTCTGACATCATTCAGAAAAATGGTATGTCTTTG < 41bp 0.801499212714381 0.599731603700045 0.6512681 0.36980283 prediction 0.403535218028673 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15257205 chr11:15257208 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_97381 0 0 0 0 2 INSC chr11:15257214 5'GT 15257214 Upstream 7bp
chr10 127516153 127516153 1 + T C STAD 127516152 + 127516132 127516172 41 TCTAAAGGCTCCTGTGAACACTGCAGAACTAACAGATCTCT TCTAAAGGCTCCTGTGAACACCGCAGAACTAACAGATCTCT < 41bp 0.837175438749653 0.63540785616207 0.13078272 0.12193841 prediction 0.403535165175167 Functional Loss - BCCIP ENSG00000107949 CDS Human protein_coding chr10:127516152 chr10:127516153 synonymous SNV . 0 22 hm5C_associated_SNPs_97382 0 0 1 0 2 BCCIP chr10:127516127 3'AG 127516127 Downstream 27bp
chr10 127516153 127516153 1 + T C STAD 127516152 + 127516132 127516172 41 TCTAAAGGCTCCTGTGAACACTGCAGAACTAACAGATCTCT TCTAAAGGCTCCTGTGAACACCGCAGAACTAACAGATCTCT < 41bp 0.837175438749653 0.63540785616207 0.13078272 0.12193841 prediction 0.403535165175167 Functional Loss - BCCIP ENSG00000107949 CDS Human protein_coding chr10:127516152 chr10:127516153 synonymous SNV . 0 22 hm5C_associated_SNPs_97382 0 0 1 0 2 BCCIP chr10:127516207 5'GT 127516207 Upstream 55bp
chr15 67835778 67835778 1 + C T UCEC 67835775 + 67835755 67835795 41 GCGGTGGACTGGACAGTGCACTCCGGGCCGCAGTTACTCTT GCGGTGGACTGGACAGTGCACTCTGGGCCGCAGTTACTCTT < 41bp 0.766132281821414 0.564368975711653 0.30947965 0.13931453 prediction 0.403526612219522 Functional Loss - MAP2K5 ENSG00000137764 CDS Human protein_coding chr15:67835775 chr15:67835778 synonymous SNV . 0 24 hm5C_associated_SNPs_97385 0 0 1 0 1 MAP2K5 chr15:67835808 5'GT 67835808 Upstream 31bp
chr2 97024923 97024923 1 + G A UCEC 97024920 + 97024900 97024940 41 GGATCACTGGCGCTTTAGGCCTCGACGCAAACGTATGTAAT GGATCACTGGCGCTTTAGGCCTCAACGCAAACGTATGTAAT < 41bp 0.701763156466388 0.457302850809388 0.19396996 0.065832615 prediction 0.403526312932775 Functional Loss - NCAPH ENSG00000121152 CDS Human protein_coding chr2:97024920 chr2:97024923 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_97386 0 0 0 0 1 NCAPH chr2:97024931 5'GT 97024931 Upstream 9bp
chr16 67235735 67235735 1 + C T UCEC 67235732 + 67235712 67235752 41 CCGGGCTAAGTGCTGACCGTCGCCGTTCCCTCTGTGCCCGA CCGGGCTAAGTGCTGACCGTCGCTGTTCCCTCTGTGCCCGA < 41bp 0.764087012604613 0.562325704051608 0.26445466 0.10049677 prediction 0.40352261710601 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67235732 chr16:67235735 nonsynonymous SNV 0.888 4 24 hm5C_associated_SNPs_97387 0 0 1 0 2 ELMO3 chr16:67235645 3'AG 67235645 Downstream 91bp
chr16 67235735 67235735 1 + C T UCEC 67235732 + 67235712 67235752 41 CCGGGCTAAGTGCTGACCGTCGCCGTTCCCTCTGTGCCCGA CCGGGCTAAGTGCTGACCGTCGCTGTTCCCTCTGTGCCCGA < 41bp 0.764087012604613 0.562325704051608 0.26445466 0.10049677 prediction 0.40352261710601 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67235732 chr16:67235735 nonsynonymous SNV 0.888 4 24 hm5C_associated_SNPs_97387 0 0 1 0 2 ELMO3 chr16:67235776 5'GT 67235776 Upstream 42bp
chr16 2285300 2285300 1 + C T COAD 2285297 + 2285277 2285317 41 CAGATCATCGTGCAGAACGTCACCATGGACGAGGAGACGGC CAGATCATCGTGCAGAACGTCACTATGGACGAGGAGACGGC < 41bp 0.761692197247103 0.559932583911014 0.19232973 0.037487417 prediction 0.403519226672178 Functional Loss - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2285297 chr16:2285300 synonymous SNV . 0 24 hm5C_associated_SNPs_97388 0 0 1 1 1 E4F1 chr16:2285217 3'AG 2285217 Downstream 84bp
chr6 80878646 80878646 1 + G T LUAD 80878642 + 80878622 80878662 41 CGCTCTGGGGATCTTTTTAACTGTGGAAGCCTCACTATCCG CGCTCTGGGGATCTTTTTAACTGTTGAAGCCTCACTATCCG < 41bp 0.717130059243057 0.515371392379554 0.2626406 0.15391743 prediction 0.403517333727006 Functional Loss - BCKDHB ENSG00000083123 CDS Human protein_coding chr6:80878642 chr6:80878646 stopgain 0.998 1 25 hm5C_associated_SNPs_97390 0 0 1 0 1 BCKDHB chr6:80878592 3'AG 80878592 Downstream 55bp
chr19 42351661 42351661 1 + G T LUAD 42351658 + 42351638 42351678 41 CATGGTGTCACCGCCCATCTCAAGGGCCACAAGCGCCTCTG CATGGTGTCACCGCCCATCTCAATGGCCACAAGCGCCTCTG < 41bp 0.932793236733984 0.731034716662269 0.9418931 0.56879354 prediction 0.403517040143431 Functional Loss - DMRTC2 ENSG00000142025 CDS Human protein_coding chr19:42351658 chr19:42351661 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_97391 0 0 0 0 1 DMRTC2 chr19:42351720 5'GT 42351720 Upstream 60bp
chrX 46457221 46457221 1 + G A rs7056956 46457218 + 46457198 46457238 41 AGTCACCACGAACAGGGGCACTCGGCATGCTGCCCCAGCAC AGTCACCACGAACAGGGGCACTCAGCATGCTGCCCCAGCAC < 41bp 0.828987108267792 0.627229359465035 0.5453871 0.2670889 prediction 0.403515497605514 Functional Loss - CHST7 ENSG00000147119 UTR3 Human protein_coding chrX:46457218 chrX:46457221 . . 0 24 hm5C_associated_SNPs_97392 0 0 0 0 1 CHST7 chrX:46457195 3'AG 46457195 Downstream 27bp
chr16 77850907 77850907 1 + G A SKCM 77850904 + 77850884 77850924 41 GGTGCCAGGATTTGAGTGTTCTGGGATTGTTGAAGCTCTGG GGTGCCAGGATTTGAGTGTTCTGAGATTGTTGAAGCTCTGG < 41bp 0.808578790898042 0.606827640344994 0.37242937 0.21117604 prediction 0.403502301106095 Functional Loss - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77850904 chr16:77850907 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_97397 0 0 0 0 2 VAT1L chr16:77850818 3'AG 77850818 Downstream 90bp
chr16 77850907 77850907 1 + G A SKCM 77850904 + 77850884 77850924 41 GGTGCCAGGATTTGAGTGTTCTGGGATTGTTGAAGCTCTGG GGTGCCAGGATTTGAGTGTTCTGAGATTGTTGAAGCTCTGG < 41bp 0.808578790898042 0.606827640344994 0.37242937 0.21117604 prediction 0.403502301106095 Functional Loss - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77850904 chr16:77850907 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_97397 0 0 0 0 2 VAT1L chr16:77850947 5'GT 77850947 Upstream 41bp
chr1 22927885 22927885 1 + C T SKCM 22927883 + 22927863 22927903 41 ACCGTGGGGGACTGGCTGGACTCCATCCGCATGGGCCGGTA ACCGTGGGGGACTGGCTGGACTTCATCCGCATGGGCCGGTA < 41bp 0.875490761100404 0.673742345820229 0.9462786 0.710501 prediction 0.403496830560351 Functional Loss - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22927883 chr1:22927885 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_97401 0 0 0 0 2 EPHA8 chr1:22927793 3'AG 22927793 Downstream 93bp
chr1 22927885 22927885 1 + C T SKCM 22927883 + 22927863 22927903 41 ACCGTGGGGGACTGGCTGGACTCCATCCGCATGGGCCGGTA ACCGTGGGGGACTGGCTGGACTTCATCCGCATGGGCCGGTA < 41bp 0.875490761100404 0.673742345820229 0.9462786 0.710501 prediction 0.403496830560351 Functional Loss - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22927883 chr1:22927885 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_97401 0 0 0 0 2 EPHA8 chr1:22927966 5'GT 22927966 Upstream 82bp
chr5 122337698 122337698 1 + C T UCEC 122337695 + 122337675 122337715 41 CCATATGTCTTGCCTGCAGCCAGCGGTAATCAAACCTGTCA CCATATGTCTTGCCTGCAGCCAGTGGTAATCAAACCTGTCA < 41bp 0.75035970492753 0.548612486883878 0.8139737 0.52912045 prediction 0.403494436087306 Functional Loss - SNX24 ENSG00000064652 CDS Human protein_coding chr5:122337695 chr5:122337698 synonymous SNV . 0 24 hm5C_associated_SNPs_97403 0 0 0 0 3 SNX24 chr5:122337635 3'AG 122337635 Downstream 64bp
chr5 122337698 122337698 1 + C T UCEC 122337695 + 122337675 122337715 41 CCATATGTCTTGCCTGCAGCCAGCGGTAATCAAACCTGTCA CCATATGTCTTGCCTGCAGCCAGTGGTAATCAAACCTGTCA < 41bp 0.75035970492753 0.548612486883878 0.8139737 0.52912045 prediction 0.403494436087306 Functional Loss - SNX24 ENSG00000064652 CDS Human protein_coding chr5:122337695 chr5:122337698 synonymous SNV . 0 24 hm5C_associated_SNPs_97403 0 0 0 0 3 SNX24 chr5:122337699 5'GT 122337699 Upstream 2bp
chr5 122337698 122337698 1 + C T UCEC 122337695 + 122337675 122337715 41 CCATATGTCTTGCCTGCAGCCAGCGGTAATCAAACCTGTCA CCATATGTCTTGCCTGCAGCCAGTGGTAATCAAACCTGTCA < 41bp 0.75035970492753 0.548612486883878 0.8139737 0.52912045 prediction 0.403494436087306 Functional Loss - SNX24 ENSG00000064652 CDS Human protein_coding chr5:122337695 chr5:122337698 synonymous SNV . 0 24 hm5C_associated_SNPs_97403 0 0 0 0 3 SNX24 chr5:122337775 5'GT 122337775 Upstream 78bp
chr14 73422285 73422285 1 + C T rs146567602 73422282 + 73422262 73422302 41 GGGAAATCTTTGCCATTGATCTGCGTTGTGGAAATCAAGGC GGGAAATCTTTGCCATTGATCTGTGTTGTGGAAATCAAGGC < 41bp 0.771668534434038 0.5699252589022 0.4890648 0.30648562 prediction 0.403486551063676 Functional Loss - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73422282 chr14:73422285 nonsynonymous SNV 0.985 4 24 hm5C_associated_SNPs_97404 0 0 0 0 1 DCAF4 chr14:73422231 3'AG 73422231 Downstream 55bp
chr9 116299150 116299150 1 + G C BLCA 116299146 + 116299126 116299166 41 GAGAGTGTGCTGGTGCCTGTCGGAGAACATCGCCAAGCAGC GAGAGTGTGCTGGTGCCTGTCGGACAACATCGCCAAGCAGC < 41bp 0.701742568274106 0.406955512238025 0.90661806 0.59513223 prediction 0.403485136548213 Functional Loss - RGS3 ENSG00000138835 CDS Human protein_coding chr9:116299146 chr9:116299150 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_97405 0 0 1 0 2 RGS3 chr9:116299076 3'AG 116299076 Downstream 75bp
chr9 116299150 116299150 1 + G C BLCA 116299146 + 116299126 116299166 41 GAGAGTGTGCTGGTGCCTGTCGGAGAACATCGCCAAGCAGC GAGAGTGTGCTGGTGCCTGTCGGACAACATCGCCAAGCAGC < 41bp 0.701742568274106 0.406955512238025 0.90661806 0.59513223 prediction 0.403485136548213 Functional Loss - RGS3 ENSG00000138835 CDS Human protein_coding chr9:116299146 chr9:116299150 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_97405 0 0 1 0 2 RGS3 chr9:116299198 5'GT 116299198 Upstream 49bp
chr12 52309284 52309284 1 + G A SKCM 52309281 + 52309261 52309301 41 TGCAGTGTTGCATCGCCGACCTGGGTGAGCCGGGCGGGGCA TGCAGTGTTGCATCGCCGACCTGAGTGAGCCGGGCGGGGCA < 41bp 0.840628045662413 0.638886549565852 0.83697915 0.5723654 prediction 0.403482992193122 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309281 chr12:52309284 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_97406 0 0 0 0 1 ACVRL1 chr12:52309284 5'GT 52309284 Upstream 1bp
chr11 1081659 1081659 1 + G A SKCM 1081656 + 1081636 1081676 41 CCTGGCCCCTCAGGCCTCTGCGGGAACTTCAACGGCCTGGA CCTGGCCCCTCAGGCCTCTGCGGAAACTTCAACGGCCTGGA < 41bp 0.812237634008225 0.610500249400006 0.9131484 0.8349749 prediction 0.403474769216437 Functional Loss - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1081656 chr11:1081659 synonymous SNV . 0 24 hm5C_associated_SNPs_97407 0 0 0 0 1 MUC2 chr11:1081649 3'AG 1081649 Downstream 11bp
chrX 150840697 150840697 1 + C T rs374356073 150840694 + 150840674 150840714 41 AACAACACCTGAAGGAGCAGCAGCGGCAGCTGCGGGAGCAG AACAACACCTGAAGGAGCAGCAGTGGCAGCTGCGGGAGCAG < 41bp 0.724089755264106 0.522355962460088 0.61690354 0.48001134 prediction 0.403467585608035 Functional Loss - PASD1 ENSG00000166049 CDS Human protein_coding chrX:150840694 chrX:150840697 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_97412 0 0 0 0 1 PASD1 chrX:150840655 3'AG 150840655 Downstream 43bp
chr10 45480368 45480368 1 + C T COAD 45480365 + 45480345 45480385 41 GCCGCGCCCCCGGTGAGGCCCAGCGCATCCGGCGACACCGG GCCGCGCCCCCGGTGAGGCCCAGTGCATCCGGCGACACCGG < 41bp 0.752290941067813 0.550558428068139 0.27033424 0.16194627 prediction 0.403465025999348 Functional Loss - RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45480365 chr10:45480368 nonsynonymous SNV 0.877 3 24 hm5C_associated_SNPs_97413 0 0 1 0 1 RASSF4 chr10:45480418 5'GT 45480418 Upstream 51bp
chr7 143510108 143510108 1 + C T COAD 143510106 + 143510086 143510126 41 TACCAAGGCCAGGAAGCTATCTCGAGCCCCCGTGGTGACTC TACCAAGGCCAGGAAGCTATCTTGAGCCCCCGTGGTGACTC < 41bp 0.849119743462682 0.647387403441009 0.3984517 0.252967 prediction 0.403464680043346 Functional Loss - LOC154761;TCAF2P1 ENSG00000159860;ENSG00000253882 ncRNA_exonic Human other chr7:143510106 chr7:143510108 . . 0 23 hm5C_associated_SNPs_97414 0 0 0 0 1 LOC154761;TCAF2P1 chr7:143510057 3'AG 143510057 Downstream 52bp
chr21 47417371 47417371 1 + G A LGG 47417368 + 47417348 47417388 41 CTATCGGACCTAAAGGCTACCGAGGCGATGAGGGTCCCCCA CTATCGGACCTAAAGGCTACCGAAGCGATGAGGGTCCCCCA < 41bp 0.701732279136715 0.450017142958437 0.9250944 0.63839155 prediction 0.403464558273429 Functional Loss - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47417368 chr21:47417371 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_97415 0 0 0 0 2 COL6A1 chr21:47417335 3'AG 47417335 Downstream 37bp
chr21 47417371 47417371 1 + G A LGG 47417368 + 47417348 47417388 41 CTATCGGACCTAAAGGCTACCGAGGCGATGAGGGTCCCCCA CTATCGGACCTAAAGGCTACCGAAGCGATGAGGGTCCCCCA < 41bp 0.701732279136715 0.450017142958437 0.9250944 0.63839155 prediction 0.403464558273429 Functional Loss - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47417368 chr21:47417371 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_97415 0 0 0 0 2 COL6A1 chr21:47417397 5'GT 47417397 Upstream 27bp
chr14 105393556 105393556 1 + G C rs2841280 105393552 + 105393532 105393572 41 CCGCCCCGCCGCCCGTGGGACAGAGAGGCTGGCACGGTAGG CCGCCCCGCCGCCCGTGGGACAGACAGGCTGGCACGGTAGG < 41bp 0.701732031236177 0.400914812768855 0.5773013 0.21345702 prediction 0.403464062472355 Functional Loss - PLD4 ENSG00000166428 CDS Human protein_coding chr14:105393552 chr14:105393556 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_97416 0 0 0 0 2 PLD4 chr14:105393478 3'AG 105393478 Downstream 79bp
chr14 105393556 105393556 1 + G C rs2841280 105393552 + 105393532 105393572 41 CCGCCCCGCCGCCCGTGGGACAGAGAGGCTGGCACGGTAGG CCGCCCCGCCGCCCGTGGGACAGACAGGCTGGCACGGTAGG < 41bp 0.701732031236177 0.400914812768855 0.5773013 0.21345702 prediction 0.403464062472355 Functional Loss - PLD4 ENSG00000166428 CDS Human protein_coding chr14:105393552 chr14:105393556 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_97416 0 0 0 0 2 PLD4 chr14:105393567 5'GT 105393567 Upstream 12bp
chr16 106609 106609 1 + C T UCEC 106606 + 106586 106626 41 TCACGGAAGACAGAAAGAAGCTCCGAGAGTAAGTGCCGGCC TCACGGAAGACAGAAAGAAGCTCTGAGAGTAAGTGCCGGCC < 41bp 0.776935530263961 0.575205331895215 0.35056144 0.29149354 prediction 0.403460396737492 Functional Loss - SNRNP25 ENSG00000161981 CDS Human protein_coding chr16:106606 chr16:106609 stopgain 0.984 1 24 hm5C_associated_SNPs_97419 0 0 1 0 1 SNRNP25 chr16:106539 3'AG 106539 Downstream 71bp
chr19 4290478 4290478 1 + C T UCEC 4290476 + 4290456 4290496 41 CTTCCTGCATCTGAAGTTCGCGCGGACCCGTGAGAACCAGG CTTCCTGCATCTGAAGTTCGCGTGGACCCGTGAGAACCAGG < 41bp 0.815218505640183 0.613495113013504 0.6097488 0.73677343 prediction 0.403446785253358 Functional Loss - SHD ENSG00000105251 CDS Human protein_coding chr19:4290476 chr19:4290478 nonsynonymous SNV 0.047 1 23 hm5C_associated_SNPs_97422 0 0 0 0 1 SHD chr19:4290444 3'AG 4290444 Downstream 35bp
chr19 55086778 55086778 1 + G A SKCM 55086775 + 55086755 55086795 41 CCAGGTCCTATGGTGGCCCCCGGGGAGAGCCTGACCCTCCA CCAGGTCCTATGGTGGCCCCCGGAGAGAGCCTGACCCTCCA < 41bp 0.828177244939302 0.626456627138786 0.9491712 0.9169656 prediction 0.403441235601031 Functional Loss - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55086775 chr19:55086778 synonymous SNV . 0 24 hm5C_associated_SNPs_97425 0 0 0 0 1 LILRA2 chr19:55086723 3'AG 55086723 Downstream 56bp
chr13 115047559 115047559 1 + C T ACC 115047557 + 115047537 115047577 41 GCTGGAGGAGCAGCTGCGCCCGCTGCCAGCACACGACTACT GCTGGAGGAGCAGCTGCGCCCGTTGCCAGCACACGACTACT < 41bp 0.701711682180289 0.448090509469005 0.22091174 0.116004586 prediction 0.403423364360577 Functional Loss - UPF3A ENSG00000169062 CDS Human protein_coding chr13:115047557 chr13:115047559 synonymous SNV . 0 23 hm5C_associated_SNPs_97428 0 0 0 0 2 UPF3A chr13:115047496 3'AG 115047496 Downstream 64bp
chr13 115047559 115047559 1 + C T ACC 115047557 + 115047537 115047577 41 GCTGGAGGAGCAGCTGCGCCCGCTGCCAGCACACGACTACT GCTGGAGGAGCAGCTGCGCCCGTTGCCAGCACACGACTACT < 41bp 0.701711682180289 0.448090509469005 0.22091174 0.116004586 prediction 0.403423364360577 Functional Loss - UPF3A ENSG00000169062 CDS Human protein_coding chr13:115047557 chr13:115047559 synonymous SNV . 0 23 hm5C_associated_SNPs_97428 0 0 0 0 2 UPF3A chr13:115047602 5'GT 115047602 Upstream 44bp
chr14 37641548 37641548 1 - G A UCEC 37641550 - 37641530 37641570 41 TCCCGCCTGGCGAAGATGTCCGCCAAGCCTGAAGTCAGCTT TCCCGCCTGGCGAAGATGTCCGTCAAGCCTGAAGTCAGCTT < 41bp 0.824344332638252 0.622635144792168 0.17973632 0.15068004 prediction 0.403418375692169 Functional Loss - SLC25A21 ENSG00000183032 CDS Human protein_coding chr14:37641550 chr14:37641548 nonsynonymous SNV 0.053 0 23 hm5C_associated_SNPs_97430 0 0 0 0 1 SLC25A21 chr14:37641486 5'GT 37641486 Upstream 63bp
chr19 58697121 58697121 1 + G T GBM 58697119 + 58697099 58697139 41 TGTAACACTGGGTTTTACCCCGGAAGAGTGGGGACTGCTGG TGTAACACTGGGTTTTACCCCGTAAGAGTGGGGACTGCTGG < 41bp 0.701708538038589 0.385208598374254 0.471117 0.14739159 prediction 0.403417076077178 Functional Loss - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58697119 chr19:58697121 stopgain 0.153 0 23 hm5C_associated_SNPs_97431 0 0 1 0 3 ZNF274 chr19:58697064 3'AG 58697064 Downstream 58bp
chr19 58697121 58697121 1 + G T GBM 58697119 + 58697099 58697139 41 TGTAACACTGGGTTTTACCCCGGAAGAGTGGGGACTGCTGG TGTAACACTGGGTTTTACCCCGTAAGAGTGGGGACTGCTGG < 41bp 0.701708538038589 0.385208598374254 0.471117 0.14739159 prediction 0.403417076077178 Functional Loss - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58697119 chr19:58697121 stopgain 0.153 0 23 hm5C_associated_SNPs_97431 0 0 1 0 3 ZNF274 chr19:58697079 3'AG 58697079 Downstream 43bp
chr19 58697121 58697121 1 + G T GBM 58697119 + 58697099 58697139 41 TGTAACACTGGGTTTTACCCCGGAAGAGTGGGGACTGCTGG TGTAACACTGGGTTTTACCCCGTAAGAGTGGGGACTGCTGG < 41bp 0.701708538038589 0.385208598374254 0.471117 0.14739159 prediction 0.403417076077178 Functional Loss - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58697119 chr19:58697121 stopgain 0.153 0 23 hm5C_associated_SNPs_97431 0 0 1 0 3 ZNF274 chr19:58697205 5'GT 58697205 Upstream 85bp
chr5 176083739 176083739 1 + C T COAD 176083736 + 176083716 176083756 41 GGCTTCATCCACACCAAAGGCTGCGTGGGCCAGTTTGAGAA GGCTTCATCCACACCAAAGGCTGTGTGGGCCAGTTTGAGAA < 41bp 0.754287754706504 0.552580247992087 0.12546214 0.05865231 prediction 0.403415013428835 Functional Loss - TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176083736 chr5:176083739 synonymous SNV . 0 24 hm5C_associated_SNPs_97434 0 0 1 0 2 TSPAN17 chr5:176083701 3'AG 176083701 Downstream 39bp
chr5 176083739 176083739 1 + C T COAD 176083736 + 176083716 176083756 41 GGCTTCATCCACACCAAAGGCTGCGTGGGCCAGTTTGAGAA GGCTTCATCCACACCAAAGGCTGTGTGGGCCAGTTTGAGAA < 41bp 0.754287754706504 0.552580247992087 0.12546214 0.05865231 prediction 0.403415013428835 Functional Loss - TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176083736 chr5:176083739 synonymous SNV . 0 24 hm5C_associated_SNPs_97434 0 0 1 0 2 TSPAN17 chr5:176083817 5'GT 176083817 Upstream 79bp
chr6 86199235 86199235 1 + G A UCEC 86199232 + 86199212 86199252 41 ATTAACAACAACCTGAGACACACGGATGAAATGTTCTGGAA ATTAACAACAACCTGAGACACACAGATGAAATGTTCTGGAA < 41bp 0.796305788505955 0.594598373104629 0.39306352 0.15904447 prediction 0.403414830802653 Functional Loss - NT5E ENSG00000135318 CDS Human protein_coding chr6:86199232 chr6:86199235 synonymous SNV . 0 24 hm5C_associated_SNPs_97435 0 0 1 0 2 NT5E chr6:86199212 3'AG 86199212 Downstream 24bp
chr6 86199235 86199235 1 + G A UCEC 86199232 + 86199212 86199252 41 ATTAACAACAACCTGAGACACACGGATGAAATGTTCTGGAA ATTAACAACAACCTGAGACACACAGATGAAATGTTCTGGAA < 41bp 0.796305788505955 0.594598373104629 0.39306352 0.15904447 prediction 0.403414830802653 Functional Loss - NT5E ENSG00000135318 CDS Human protein_coding chr6:86199232 chr6:86199235 synonymous SNV . 0 24 hm5C_associated_SNPs_97435 0 0 1 0 2 NT5E chr6:86199317 5'GT 86199317 Upstream 83bp
chr14 76906060 76906060 1 + G T LUAD 76906056 + 76906036 76906076 41 CACTACGGCGTGGCCTCCTGCGAGGCTTGCAAGGCCTTCTT CACTACGGCGTGGCCTCCTGCGAGTCTTGCAAGGCCTTCTT < 41bp 0.769428265161389 0.567721784591457 0.9269489 0.4284964 prediction 0.403412961139865 Functional Loss - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76906056 chr14:76906060 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_97438 0 0 0 0 1 ESRRB chr14:76906093 5'GT 76906093 Upstream 34bp
chrX 153421858 153421858 1 + C T UCEC 153421855 + 153421835 153421875 41 GTGGTGATGATCTTTGCGTACTGCGTCTGCTGGGGACCCTA GTGGTGATGATCTTTGCGTACTGTGTCTGCTGGGGACCCTA < 41bp 0.742034805049207 0.540328812007284 0.11288002 0.1755661 prediction 0.403411986083845 Functional Loss - OPN1LW ENSG00000102076 CDS Human protein_coding chrX:153421855 chrX:153421858 synonymous SNV . 0 24 hm5C_associated_SNPs_97440 0 0 0 0 1 OPN1LW chrX:153421769 3'AG 153421769 Downstream 90bp
chr20 36022382 36022382 1 + C T SKCM 36022379 + 36022359 36022399 41 AACTACGTGGCGCCCTCCGACTCCATCCAGGCTGAGGAGTG AACTACGTGGCGCCCTCCGACTCTATCCAGGCTGAGGAGTG < 41bp 0.701705459637418 0.465481047184782 0.95041376 0.7963022 prediction 0.403410919274836 Functional Loss - SRC ENSG00000197122 CDS Human protein_coding chr20:36022379 chr20:36022382 synonymous SNV . 0 24 hm5C_associated_SNPs_97442 0 0 0 0 2 SRC chr20:36022298 3'AG 36022298 Downstream 85bp
chr20 36022382 36022382 1 + C T SKCM 36022379 + 36022359 36022399 41 AACTACGTGGCGCCCTCCGACTCCATCCAGGCTGAGGAGTG AACTACGTGGCGCCCTCCGACTCTATCCAGGCTGAGGAGTG < 41bp 0.701705459637418 0.465481047184782 0.95041376 0.7963022 prediction 0.403410919274836 Functional Loss - SRC ENSG00000197122 CDS Human protein_coding chr20:36022379 chr20:36022382 synonymous SNV . 0 24 hm5C_associated_SNPs_97442 0 0 0 0 2 SRC chr20:36022396 5'GT 36022396 Upstream 15bp
chr22 24035973 24035973 1 + G A HNSC 24035970 + 24035950 24035990 41 TGTTCAAGAAGGTGGTGCTCCACGAATGCTTGGGCTGCATC TGTTCAAGAAGGTGGTGCTCCACAAATGCTTGGGCTGCATC < 41bp 0.82023319647161 0.61852921993796 0.5460524 0.33684444 prediction 0.4034079530673 Functional Loss - RGL4 ENSG00000159496 CDS Human protein_coding chr22:24035970 chr22:24035973 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_97443 0 0 0 0 1 RGL4 chr22:24035946 3'AG 24035946 Downstream 28bp
chr4 1738974 1738974 1 + C T rs144550220 1738972 + 1738952 1738992 41 CTCTGCTTGGTGGCAGCATGCACGGTGCAAATGAGACTCCC CTCTGCTTGGTGGCAGCATGCATGGTGCAAATGAGACTCCC < 41bp 0.844977383070601 0.643274246113165 0.9006034 0.8981736 prediction 0.403406273914873 Functional Loss - TACC3 ENSG00000013810 CDS Human protein_coding chr4:1738972 chr4:1738974 synonymous SNV . 0 23 hm5C_associated_SNPs_97444 0 0 1 0 2 TACC3 chr4:1738968 3'AG 1738968 Downstream 7bp
chr4 1738974 1738974 1 + C T rs144550220 1738972 + 1738952 1738992 41 CTCTGCTTGGTGGCAGCATGCACGGTGCAAATGAGACTCCC CTCTGCTTGGTGGCAGCATGCATGGTGCAAATGAGACTCCC < 41bp 0.844977383070601 0.643274246113165 0.9006034 0.8981736 prediction 0.403406273914873 Functional Loss - TACC3 ENSG00000013810 CDS Human protein_coding chr4:1738972 chr4:1738974 synonymous SNV . 0 23 hm5C_associated_SNPs_97444 0 0 1 0 2 TACC3 chr4:1739055 5'GT 1739055 Upstream 82bp
chr1 151263026 151263026 1 + C T HNSC 151263024 + 151263004 151263044 41 TGGCCGGGGGACCACCTTGGCTCGGGGTTCCAGTGCCAGAG TGGCCGGGGGACCACCTTGGCTTGGGGTTCCAGTGCCAGAG < 41bp 0.843756380212858 0.642057807957039 0.41166073 0.25587726 prediction 0.403397144511639 Functional Loss - ZNF687 ENSG00000143373 CDS Human protein_coding chr1:151263024 chr1:151263026 nonsynonymous SNV 0.097 2 23 hm5C_associated_SNPs_97446 0 0 1 0 1 ZNF687 chr1:151263049 5'GT 151263049 Upstream 24bp
chr22 25617450 25617450 1 + G A SKCM 25617447 + 25617427 25617467 41 AAGCCACAGTCCCTCAACCCCAAGGTGGGTACCTCTCAGAG AAGCCACAGTCCCTCAACCCCAAAGTGGGTACCTCTCAGAG < 41bp 0.826270426946256 0.624575670519787 0.8272621 0.654441 prediction 0.403389512852937 Functional Loss - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25617447 chr22:25617450 synonymous SNV . 0 24 hm5C_associated_SNPs_97451 0 0 0 0 2 CRYBB2 chr22:25617371 3'AG 25617371 Downstream 80bp
chr22 25617450 25617450 1 + G A SKCM 25617447 + 25617427 25617467 41 AAGCCACAGTCCCTCAACCCCAAGGTGGGTACCTCTCAGAG AAGCCACAGTCCCTCAACCCCAAAGTGGGTACCTCTCAGAG < 41bp 0.826270426946256 0.624575670519787 0.8272621 0.654441 prediction 0.403389512852937 Functional Loss - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25617447 chr22:25617450 synonymous SNV . 0 24 hm5C_associated_SNPs_97451 0 0 0 0 2 CRYBB2 chr22:25617450 5'GT 25617450 Upstream 1bp
chr6 43106921 43106921 1 + C T UCEC 43106918 + 43106898 43106938 41 AATGGGACCTTGCGCATCAACAGCGTGGAGGTGTATGATGG AATGGGACCTTGCGCATCAACAGTGTGGAGGTGTATGATGG < 41bp 0.701694571341792 0.478591637709338 0.3511309 0.12729636 prediction 0.403389142683585 Functional Loss - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43106918 chr6:43106921 synonymous SNV . 0 24 hm5C_associated_SNPs_97452 0 0 1 0 2 PTK7 chr6:43106874 3'AG 43106874 Downstream 48bp
chr6 43106921 43106921 1 + C T UCEC 43106918 + 43106898 43106938 41 AATGGGACCTTGCGCATCAACAGCGTGGAGGTGTATGATGG AATGGGACCTTGCGCATCAACAGTGTGGAGGTGTATGATGG < 41bp 0.701694571341792 0.478591637709338 0.3511309 0.12729636 prediction 0.403389142683585 Functional Loss - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43106918 chr6:43106921 synonymous SNV . 0 24 hm5C_associated_SNPs_97452 0 0 1 0 2 PTK7 chr6:43107009 5'GT 43107009 Upstream 89bp
chr12 4665646 4665646 1 + G A LIHC 4665643 + 4665623 4665663 41 CGCAGTCCTTCAGCTGAAAGCAAGAAACCTAAATGGGTCCC CGCAGTCCTTCAGCTGAAAGCAAAAAACCTAAATGGGTCCC < 41bp 0.797663793232641 0.595972010502608 0.43465507 0.26040903 prediction 0.403383565460067 Functional Loss - RAD51AP1 ENSG00000111247 CDS Human protein_coding chr12:4665643 chr12:4665646 synonymous SNV . 0 24 hm5C_associated_SNPs_97454 0 0 0 0 2 RAD51AP1 chr12:4665668 5'GT 4665668 Upstream 23bp
chr12 4665646 4665646 1 + G A LIHC 4665643 + 4665623 4665663 41 CGCAGTCCTTCAGCTGAAAGCAAGAAACCTAAATGGGTCCC CGCAGTCCTTCAGCTGAAAGCAAAAAACCTAAATGGGTCCC < 41bp 0.797663793232641 0.595972010502608 0.43465507 0.26040903 prediction 0.403383565460067 Functional Loss - RAD51AP1 ENSG00000111247 CDS Human protein_coding chr12:4665643 chr12:4665646 synonymous SNV . 0 24 hm5C_associated_SNPs_97454 0 0 0 0 2 RAD51AP1 chr12:4665716 5'GT 4665716 Upstream 71bp
chr19 3278060 3278060 1 + G A rs147273114 3278057 + 3278037 3278077 41 TTCGTGAAGTTCTCCTCCCACACGGAGGCGCAGGCGGCCAT TTCGTGAAGTTCTCCTCCCACACAGAGGCGCAGGCGGCCAT < 41bp 0.832904005818326 0.631216604885364 0.3981013 0.15164009 prediction 0.403374801865924 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3278057 chr19:3278060 synonymous SNV . 0 24 hm5C_associated_SNPs_97457 0 0 0 0 2 CELF5 chr19:3278029 3'AG 3278029 Downstream 32bp
chr19 3278060 3278060 1 + G A rs147273114 3278057 + 3278037 3278077 41 TTCGTGAAGTTCTCCTCCCACACGGAGGCGCAGGCGGCCAT TTCGTGAAGTTCTCCTCCCACACAGAGGCGCAGGCGGCCAT < 41bp 0.832904005818326 0.631216604885364 0.3981013 0.15164009 prediction 0.403374801865924 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3278057 chr19:3278060 synonymous SNV . 0 24 hm5C_associated_SNPs_97457 0 0 0 0 2 CELF5 chr19:3278108 5'GT 3278108 Upstream 49bp
chr4 72316975 72316975 1 + G T UCEC 72316971 + 72316951 72316991 41 ACGCCCCATGATGGAGGTCACGGAGGAGGAGGACATGGGGA ACGCCCCATGATGGAGGTCACGGATGAGGAGGACATGGGGA < 41bp 0.701684746955406 0.495452556465578 0.86217916 0.3508947 prediction 0.403369493910812 Functional Loss - SLC4A4 ENSG00000080493 CDS Human protein_coding chr4:72316971 chr4:72316975 stopgain 0.993 1 25 hm5C_associated_SNPs_97458 0 0 0 0 2 SLC4A4 chr4:72316905 3'AG 72316905 Downstream 71bp
chr4 72316975 72316975 1 + G T UCEC 72316971 + 72316951 72316991 41 ACGCCCCATGATGGAGGTCACGGAGGAGGAGGACATGGGGA ACGCCCCATGATGGAGGTCACGGATGAGGAGGACATGGGGA < 41bp 0.701684746955406 0.495452556465578 0.86217916 0.3508947 prediction 0.403369493910812 Functional Loss - SLC4A4 ENSG00000080493 CDS Human protein_coding chr4:72316971 chr4:72316975 stopgain 0.993 1 25 hm5C_associated_SNPs_97458 0 0 0 0 2 SLC4A4 chr4:72317018 5'GT 72317018 Upstream 44bp
chr12 113328755 113328755 1 + C T PAAD 113328752 + 113328732 113328772 41 CTCATTGTGGGCATCATACGCTGCGTGCACCTGGCTGCCAT CTCATTGTGGGCATCATACGCTGTGTGCACCTGGCTGCCAT < 41bp 0.777209957258447 0.575527995294965 0.40919325 0.2836443 prediction 0.403363923926964 Functional Loss - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113328752 chr12:113328755 synonymous SNV . 0 24 hm5C_associated_SNPs_97459 0 0 0 0 2 RPH3A chr12:113328657 3'AG 113328657 Downstream 99bp
chr12 113328755 113328755 1 + C T PAAD 113328752 + 113328732 113328772 41 CTCATTGTGGGCATCATACGCTGCGTGCACCTGGCTGCCAT CTCATTGTGGGCATCATACGCTGTGTGCACCTGGCTGCCAT < 41bp 0.777209957258447 0.575527995294965 0.40919325 0.2836443 prediction 0.403363923926964 Functional Loss - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113328752 chr12:113328755 synonymous SNV . 0 24 hm5C_associated_SNPs_97459 0 0 0 0 2 RPH3A chr12:113328808 5'GT 113328808 Upstream 54bp
chr8 24358310 24358310 1 + C T rs148598391 24358307 + 24358287 24358327 41 TTTCTTCATGTTGCAGATATCACCATCTTGGTTGTTGTGCT TTTCTTCATGTTGCAGATATCACTATCTTGGTTGTTGTGCT < 41bp 0.70167626126098 0.487690937025363 0.017385542 0.023077905 prediction 0.40335252252196 Functional Loss - ADAM7 ENSG00000069206 CDS Human protein_coding chr8:24358307 chr8:24358310 synonymous SNV . 0 24 hm5C_associated_SNPs_97461 0 0 0 0 2 ADAM7 chr8:24358303 3'AG 24358303 Downstream 8bp
chr8 24358310 24358310 1 + C T rs148598391 24358307 + 24358287 24358327 41 TTTCTTCATGTTGCAGATATCACCATCTTGGTTGTTGTGCT TTTCTTCATGTTGCAGATATCACTATCTTGGTTGTTGTGCT < 41bp 0.70167626126098 0.487690937025363 0.017385542 0.023077905 prediction 0.40335252252196 Functional Loss - ADAM7 ENSG00000069206 CDS Human protein_coding chr8:24358307 chr8:24358310 synonymous SNV . 0 24 hm5C_associated_SNPs_97461 0 0 0 0 2 ADAM7 chr8:24358408 5'GT 24358408 Upstream 99bp
chr17 79852410 79852410 1 + C T READ 79852407 + 79852387 79852427 41 GCCACTTGGCTCTGGGTGGCCAACGATGAGAACTGTGGCAT GCCACTTGGCTCTGGGTGGCCAATGATGAGAACTGTGGCAT < 41bp 0.726993336583077 0.525317810163048 0.79722244 0.745831 prediction 0.403351052840058 Functional Loss - ANAPC11 ENSG00000141552 CDS Human protein_coding chr17:79852407 chr17:79852410 synonymous SNV . 0 24 hm5C_associated_SNPs_97462 0 0 1 0 2 ANAPC11 chr17:79852343 3'AG 79852343 Downstream 68bp
chr17 79852410 79852410 1 + C T READ 79852407 + 79852387 79852427 41 GCCACTTGGCTCTGGGTGGCCAACGATGAGAACTGTGGCAT GCCACTTGGCTCTGGGTGGCCAATGATGAGAACTGTGGCAT < 41bp 0.726993336583077 0.525317810163048 0.79722244 0.745831 prediction 0.403351052840058 Functional Loss - ANAPC11 ENSG00000141552 CDS Human protein_coding chr17:79852407 chr17:79852410 synonymous SNV . 0 24 hm5C_associated_SNPs_97462 0 0 1 0 2 ANAPC11 chr17:79852462 5'GT 79852462 Upstream 53bp
chr12 57486938 57486938 1 + C T COAD 57486935 + 57486915 57486955 41 CGCCCCAGCCTGGAGGAGGACAGCGCCAGCCTGTCTGGGGA CGCCCCAGCCTGGAGGAGGACAGTGCCAGCCTGTCTGGGGA < 41bp 0.701672597176691 0.487150109500498 0.8345897 0.30537754 prediction 0.403345194353382 Functional Loss - NAB2 ENSG00000166886 CDS Human protein_coding chr12:57486935 chr12:57486938 synonymous SNV . 0 24 hm5C_associated_SNPs_97465 0 0 0 0 1 NAB2 chr12:57486846 3'AG 57486846 Downstream 93bp
chr17 40913366 40913366 1 + C T rs9892728 40913364 + 40913344 40913384 41 CGGCAGCGCTCCGCCTCCTCCTCCTGCTGGGCGGTGAGCGC CGGCAGCGCTCCGCCTCCTCCTTCTGCTGGGCGGTGAGCGC < 41bp 0.812332734222745 0.61066831174601 0.20553881 0.28229225 prediction 0.403328844953471 Functional Loss - RAMP2 ENSG00000131477 CDS Human protein_coding chr17:40913364 chr17:40913366 synonymous SNV . 0 23 hm5C_associated_SNPs_97466 0 1 0 0 1 RAMP2 chr17:40913376 5'GT 40913376 Upstream 11bp
chr3 148545843 148545843 1 + C T COAD 148545841 + 148545821 148545861 41 AAAATCACATTAACATAATCCGCGAGTTGGCCAGCACGACC AAAATCACATTAACATAATCCGTGAGTTGGCCAGCACGACC < 41bp 0.864595719361614 0.66293151428445 0.1472641 0.1360307 prediction 0.403328410154327 Functional Loss - CPB1 ENSG00000153002 CDS Human protein_coding chr3:148545841 chr3:148545843 synonymous SNV . 0 23 hm5C_associated_SNPs_97467 0 0 0 0 2 CPB1 chr3:148545789 3'AG 148545789 Downstream 55bp
chr3 148545843 148545843 1 + C T COAD 148545841 + 148545821 148545861 41 AAAATCACATTAACATAATCCGCGAGTTGGCCAGCACGACC AAAATCACATTAACATAATCCGTGAGTTGGCCAGCACGACC < 41bp 0.864595719361614 0.66293151428445 0.1472641 0.1360307 prediction 0.403328410154327 Functional Loss - CPB1 ENSG00000153002 CDS Human protein_coding chr3:148545841 chr3:148545843 synonymous SNV . 0 23 hm5C_associated_SNPs_97467 0 0 0 0 2 CPB1 chr3:148545864 5'GT 148545864 Upstream 22bp
chr11 36472841 36472841 1 + G T STAD 36472837 + 36472817 36472857 41 AGCAAGTGGTTTCTCCTTTCCTCGGCATCAGCGGGGACCGT AGCAAGTGGTTTCTCCTTTCCTCGTCATCAGCGGGGACCGT < 41bp 0.716159876777563 0.514497472291719 0.12377775 0.04987943 prediction 0.403324808971688 Functional Loss - PRR5L ENSG00000135362 CDS Human protein_coding chr11:36472837 chr11:36472841 nonsynonymous SNV 0.506 3 25 hm5C_associated_SNPs_97468 0 0 0 0 1 PRR5L chr11:36472885 5'GT 36472885 Upstream 45bp
chr6 32411240 32411240 1 + T C COAD 32411239 + 32411219 32411259 41 GATGAGCCTCTTCTCAAGCACTGGGGTATGGACCAACACTC GATGAGCCTCTTCTCAAGCACCGGGGTATGGACCAACACTC < 41bp 0.733716168911662 0.532054664468877 0.7549457 0.89328516 prediction 0.403323008885571 Functional Loss - HLA-DRA ENSG00000204287 CDS Human protein_coding chr6:32411239 chr6:32411240 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_97469 0 0 0 0 1 HLA-DRA chr6:32411243 5'GT 32411243 Upstream 4bp
chr10 124096041 124096041 1 + T C rs1129973 124096040 + 124096020 124096060 41 CACAGACCTGGAATCTCCCTCTGCGGTCTACGAGCACAACC CACAGACCTGGAATCTCCCTCCGCGGTCTACGAGCACAACC < 41bp 0.701658201053308 0.448146581266132 0.3526111 0.73910296 prediction 0.403316402106617 Functional Loss - BTBD16 ENSG00000138152 CDS Human protein_coding chr10:124096040 chr10:124096041 synonymous SNV . 0 22 hm5C_associated_SNPs_97472 0 0 0 0 1 BTBD16 chr10:124096009 3'AG 124096009 Downstream 33bp
chr15 22368983 22368983 1 + G A SKCM 22368980 + 22368960 22369000 41 CCCCTCCACTATGCTACCATCATGAATCAACGTCTCTGCTG CCCCTCCACTATGCTACCATCATAAATCAACGTCTCTGCTG < 41bp 0.820363700971695 0.618708992393343 0.110610425 0.06825736 prediction 0.403309417156703 Functional Loss - OR4M2 ENSG00000182974 CDS Human protein_coding chr15:22368980 chr15:22368983 nonsynonymous SNV 0.897 2 24 hm5C_associated_SNPs_97475 0 0 0 1 1 OR4M2 chr15:22369052 5'GT 22369052 Upstream 70bp
chr11 124955356 124955356 1 + C T COAD 124955353 + 124955333 124955373 41 ACGGTCACGGCCATCATTGACGGCACCGGCTCCATAGGTCT ACGGTCACGGCCATCATTGACGGTACCGGCTCCATAGGTCT < 41bp 0.754942810591841 0.55329061546285 0.20406482 0.14127192 prediction 0.403304390257982 Functional Loss - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124955353 chr11:124955356 synonymous SNV . 0 24 hm5C_associated_SNPs_97480 0 0 0 0 2 SLC37A2 chr11:124955291 3'AG 124955291 Downstream 66bp
chr11 124955356 124955356 1 + C T COAD 124955353 + 124955333 124955373 41 ACGGTCACGGCCATCATTGACGGCACCGGCTCCATAGGTCT ACGGTCACGGCCATCATTGACGGTACCGGCTCCATAGGTCT < 41bp 0.754942810591841 0.55329061546285 0.20406482 0.14127192 prediction 0.403304390257982 Functional Loss - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124955353 chr11:124955356 synonymous SNV . 0 24 hm5C_associated_SNPs_97480 0 0 0 0 2 SLC37A2 chr11:124955369 5'GT 124955369 Upstream 14bp
chr13 25262581 25262581 1 + T C SKCM 25262580 + 25262560 25262600 41 TGGTGGGGGGGTTCTCTATCCTCCTGTGGGTGGGCGCCTTT TGGTGGGGGGGTTCTCTATCCCCCTGTGGGTGGGCGCCTTT < 41bp 0.701651270014367 0.433192955462835 0.23620206 0.08753404 prediction 0.403302540028734 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25262580 chr13:25262581 nonsynonymous SNV 0.970 5 22 hm5C_associated_SNPs_97482 0 0 0 0 1 ATP12A chr13:25262660 5'GT 25262660 Upstream 80bp
chr12 9840677 9840677 1 + G A UCEC 9840674 + 9840654 9840694 41 TTGCTCAGGTTGAAAGCTTCCAGGAACTGGTAAGAAAATAG TTGCTCAGGTTGAAAGCTTCCAGAAACTGGTAAGAAAATAG < 41bp 0.769862287111037 0.56821128929359 0.5625922 0.35865027 prediction 0.403301995634895 Functional Loss - CLEC2D ENSG00000069493 CDS Human protein_coding chr12:9840674 chr12:9840677 nonsynonymous SNV 0.614 3 24 hm5C_associated_SNPs_97483 0 0 1 0 2 CLEC2D chr12:9840682 5'GT 9840682 Upstream 6bp
chr12 9840677 9840677 1 + G A UCEC 9840674 + 9840654 9840694 41 TTGCTCAGGTTGAAAGCTTCCAGGAACTGGTAAGAAAATAG TTGCTCAGGTTGAAAGCTTCCAGAAACTGGTAAGAAAATAG < 41bp 0.769862287111037 0.56821128929359 0.5625922 0.35865027 prediction 0.403301995634895 Functional Loss - CLEC2D ENSG00000069493 CDS Human protein_coding chr12:9840674 chr12:9840677 nonsynonymous SNV 0.614 3 24 hm5C_associated_SNPs_97483 0 0 1 0 2 CLEC2D chr12:9840757 5'GT 9840757 Upstream 81bp
chr16 20442386 20442386 1 + C T UCEC 20442383 + 20442363 20442403 41 ATGGGGAAGGCGTCCCCACCCTACGATGTGCAGGTAGCAGC ATGGGGAAGGCGTCCCCACCCTATGATGTGCAGGTAGCAGC < 41bp 0.768559180363538 0.566909326362087 0.07158369 0.15817374 prediction 0.403299708002903 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20442383 chr16:20442386 synonymous SNV . 0 24 hm5C_associated_SNPs_97485 0 0 0 0 2 ACSM5 chr16:20442315 3'AG 20442315 Downstream 72bp
chr16 20442386 20442386 1 + C T UCEC 20442383 + 20442363 20442403 41 ATGGGGAAGGCGTCCCCACCCTACGATGTGCAGGTAGCAGC ATGGGGAAGGCGTCCCCACCCTATGATGTGCAGGTAGCAGC < 41bp 0.768559180363538 0.566909326362087 0.07158369 0.15817374 prediction 0.403299708002903 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20442383 chr16:20442386 synonymous SNV . 0 24 hm5C_associated_SNPs_97485 0 0 0 0 2 ACSM5 chr16:20442395 5'GT 20442395 Upstream 10bp
chr1 170916687 170916687 1 + G T LAML 170916685 + 170916665 170916705 41 TAGAGAGTAGTCTCCAGATTCTGCAAGACAGTGTGAAATGG TAGAGAGTAGTCTCCAGATTCTTCAAGACAGTGTGAAATGG < 41bp 0.701648823408094 0.371011112479992 0.28027532 0.08704066 prediction 0.403297646816187 Functional Loss - MROH9 ENSG00000117501 CDS Human protein_coding chr1:170916685 chr1:170916687 synonymous SNV . 0 23 hm5C_associated_SNPs_97486 0 0 0 0 2 MROH9 chr1:170916668 3'AG 170916668 Downstream 20bp
chr1 170916687 170916687 1 + G T LAML 170916685 + 170916665 170916705 41 TAGAGAGTAGTCTCCAGATTCTGCAAGACAGTGTGAAATGG TAGAGAGTAGTCTCCAGATTCTTCAAGACAGTGTGAAATGG < 41bp 0.701648823408094 0.371011112479992 0.28027532 0.08704066 prediction 0.403297646816187 Functional Loss - MROH9 ENSG00000117501 CDS Human protein_coding chr1:170916685 chr1:170916687 synonymous SNV . 0 23 hm5C_associated_SNPs_97486 0 0 0 0 2 MROH9 chr1:170916714 5'GT 170916714 Upstream 28bp
chr8 24256928 24256928 1 + C T UCEC 24256925 + 24256905 24256945 41 GCGGGATTAGCTTCAACAATCGACGTGTGGGACTGGCAGCT GCGGGATTAGCTTCAACAATCGATGTGTGGGACTGGCAGCT < 41bp 0.755692611874125 0.554043995150431 0.68350285 0.34287715 prediction 0.403297233447388 Functional Loss - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24256925 chr8:24256928 nonsynonymous SNV 0.184 2 24 hm5C_associated_SNPs_97487 0 0 0 0 2 ADAMDEC1 chr8:24256906 3'AG 24256906 Downstream 23bp
chr8 24256928 24256928 1 + C T UCEC 24256925 + 24256905 24256945 41 GCGGGATTAGCTTCAACAATCGACGTGTGGGACTGGCAGCT GCGGGATTAGCTTCAACAATCGATGTGTGGGACTGGCAGCT < 41bp 0.755692611874125 0.554043995150431 0.68350285 0.34287715 prediction 0.403297233447388 Functional Loss - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24256925 chr8:24256928 nonsynonymous SNV 0.184 2 24 hm5C_associated_SNPs_97487 0 0 0 0 2 ADAMDEC1 chr8:24256987 5'GT 24256987 Upstream 60bp
chr12 2930439 2930439 1 + C T SKCM 2930436 + 2930416 2930456 41 TGCTGTGCACAGGGAGACCCCAGCTGCCCGAGACGTGGTGC TGCTGTGCACAGGGAGACCCCAGTTGCCCGAGACGTGGTGC < 41bp 0.754791050142497 0.553143286246435 0.15800717 0.18158358 prediction 0.403295527792125 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2930436 chr12:2930439 nonsynonymous SNV 0.982 0 24 hm5C_associated_SNPs_97488 0 0 1 3 2 ITFG2 chr12:2930428 3'AG 2930428 Downstream 12bp
chr12 2930439 2930439 1 + C T SKCM 2930436 + 2930416 2930456 41 TGCTGTGCACAGGGAGACCCCAGCTGCCCGAGACGTGGTGC TGCTGTGCACAGGGAGACCCCAGTTGCCCGAGACGTGGTGC < 41bp 0.754791050142497 0.553143286246435 0.15800717 0.18158358 prediction 0.403295527792125 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2930436 chr12:2930439 nonsynonymous SNV 0.982 0 24 hm5C_associated_SNPs_97488 0 0 1 3 2 ITFG2 chr12:2930525 5'GT 2930525 Upstream 87bp
chr18 21338466 21338466 1 + G A GBM 21338463 + 21338443 21338483 41 CCGCCGCTTGGGAGCAGAGCCACGAGTGTGAAGGTGGGTGT CCGCCGCTTGGGAGCAGAGCCACAAGTGTGAAGGTGGGTGT < 41bp 0.747513946825364 0.54587083465783 0.17538396 0.20405081 prediction 0.403286224335067 Functional Loss - LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21338463 chr18:21338466 nonsynonymous SNV 0.534 1 24 hm5C_associated_SNPs_97489 0 0 0 0 1 LAMA3 chr18:21338475 5'GT 21338475 Upstream 10bp
chr18 29795161 29795161 1 + G A SKCM 29795158 + 29795138 29795178 41 GAACCAGTGCCTTTATAACCCACGAAAGGCTGAAAAGCAGA GAACCAGTGCCTTTATAACCCACAAAAGGCTGAAAAGCAGA < 41bp 0.77737540561604 0.575733364159361 0.09171769 0.05102235 prediction 0.403284082913358 Functional Loss - MEP1B ENSG00000141434 CDS Human protein_coding chr18:29795158 chr18:29795161 nonsynonymous SNV 0.013 0 24 hm5C_associated_SNPs_97491 0 0 0 0 1 MEP1B chr18:29795224 5'GT 29795224 Upstream 64bp
chr16 24366221 24366221 1 + C T UCEC 24366218 + 24366198 24366238 41 CTGCTGTTCTTCGGCGGGCTCTGCGTGGCAGCCAGTGAGTT CTGCTGTTCTTCGGCGGGCTCTGTGTGGCAGCCAGTGAGTT < 41bp 0.701640810271335 0.482935083813662 0.3836228 0.33927536 prediction 0.403281620542669 Functional Loss - CACNG3 ENSG00000006116 CDS Human protein_coding chr16:24366218 chr16:24366221 synonymous SNV . 0 24 hm5C_associated_SNPs_97494 0 0 0 0 2 CACNG3 chr16:24366154 3'AG 24366154 Downstream 68bp
chr16 24366221 24366221 1 + C T UCEC 24366218 + 24366198 24366238 41 CTGCTGTTCTTCGGCGGGCTCTGCGTGGCAGCCAGTGAGTT CTGCTGTTCTTCGGCGGGCTCTGTGTGGCAGCCAGTGAGTT < 41bp 0.701640810271335 0.482935083813662 0.3836228 0.33927536 prediction 0.403281620542669 Functional Loss - CACNG3 ENSG00000006116 CDS Human protein_coding chr16:24366218 chr16:24366221 synonymous SNV . 0 24 hm5C_associated_SNPs_97494 0 0 0 0 2 CACNG3 chr16:24366294 5'GT 24366294 Upstream 74bp
chr16 66997277 66997277 1 + C T COAD 66997274 + 66997254 66997294 41 GGGTGTGCGGGATGCCAGCACTGCGCCCCCAATGTGAGTAG GGGTGTGCGGGATGCCAGCACTGTGCCCCCAATGTGAGTAG < 41bp 0.762941406907788 0.561302015418779 0.11599639 0.14890876 prediction 0.403278782978018 Functional Loss - CES3 ENSG00000172828 CDS Human protein_coding chr16:66997274 chr16:66997277 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_97495 0 0 1 0 1 CES3 chr16:66997286 5'GT 66997286 Upstream 10bp
chr5 150867571 150867571 1 + T C STAD 150867570 + 150867550 150867590 41 TGGCCATCCTCATCCCCCGCCTGGACCTGGTCATCTCCCTG TGGCCATCCTCATCCCCCGCCCGGACCTGGTCATCTCCCTG < 41bp 0.701639055371133 0.451566109592188 0.15647408 0.14403573 prediction 0.403278110742267 Functional Loss - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150867570 chr5:150867571 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_97496 0 0 0 0 1 SLC36A1 chr5:150867544 3'AG 150867544 Downstream 28bp
chr2 102476321 102476321 1 + C T LUSC 102476319 + 102476299 102476339 41 CTACGAGCCTGCTGACCGAGCGCGAGAGGTATCCTCTTTCC CTACGAGCCTGCTGACCGAGCGTGAGAGGTATCCTCTTTCC < 41bp 0.843890877703352 0.642256585936112 0.2459718 0.26316187 prediction 0.40326858353448 Functional Loss - MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102476319 chr2:102476321 stopgain 0.843 0 23 hm5C_associated_SNPs_97500 0 0 1 0 1 MAP4K4 chr2:102476326 5'GT 102476326 Upstream 6bp
chr12 109962291 109962291 1 + G T LUSC 109962287 + 109962267 109962307 41 CTGGGCCTGACGCTGTCTTACGACGAGGACGTCATGGGTCA CTGGGCCTGACGCTGTCTTACGACTAGGACGTCATGGGTCA < 41bp 0.701632880045969 0.491829572356561 0.8365313 0.21089873 prediction 0.403265760091939 Functional Loss - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109962287 chr12:109962291 stopgain 0.740 1 25 hm5C_associated_SNPs_97503 0 0 1 0 2 UBE3B chr12:109962243 3'AG 109962243 Downstream 49bp
chr12 109962291 109962291 1 + G T LUSC 109962287 + 109962267 109962307 41 CTGGGCCTGACGCTGTCTTACGACGAGGACGTCATGGGTCA CTGGGCCTGACGCTGTCTTACGACTAGGACGTCATGGGTCA < 41bp 0.701632880045969 0.491829572356561 0.8365313 0.21089873 prediction 0.403265760091939 Functional Loss - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109962287 chr12:109962291 stopgain 0.740 1 25 hm5C_associated_SNPs_97503 0 0 1 0 2 UBE3B chr12:109962308 5'GT 109962308 Upstream 18bp
chr14 24624494 24624494 1 + C T rs374641335 24624491 + 24624471 24624511 41 GCCTGTGGCCGCCCCGACCTCACCGATGACACACAGTTGCT GCCTGTGGCCGCCCCGACCTCACTGATGACACACAGTTGCT < 41bp 0.701630097652957 0.474295411133969 0.1888256 0.19610658 prediction 0.403260195305915 Functional Loss - RNF31 ENSG00000092098;ENSG00000259529 CDS Human other chr14:24624491 chr14:24624494 synonymous SNV . 0 24 hm5C_associated_SNPs_97504 0 0 1 2 1 RNF31 chr14:24624539 5'GT 24624539 Upstream 46bp
chr5 96271809 96271809 1 + G T rs538957339 96271806 + 96271786 96271826 41 TCAGCTGGGCCGCCTCAGCTCTCGGAGTAGGAAGCTCGGGC TCAGCTGGGCCGCCTCAGCTCTCTGAGTAGGAAGCTCGGGC < 41bp 0.864106976792269 0.662478048657473 0.3863004 0.47735837 prediction 0.403257856269591 Functional Loss - LNPEP ENSG00000113441 UTR5 Human protein_coding chr5:96271806 chr5:96271809 . . 0 24 hm5C_associated_SNPs_97505 0 0 1 0 1 LNPEP chr5:96271878 5'GT 96271878 Upstream 70bp
chr9 132630355 132630355 1 + G A CESC 132630352 + 132630332 132630372 41 CTCAAGGAGCCGGTGGTGGCCACGGTGGCGCTGACGGAGGC CTCAAGGAGCCGGTGGTGGCCACAGTGGCGCTGACGGAGGC < 41bp 0.817991370117261 0.616366700484952 0.8126607 0.7896284 prediction 0.403249339264619 Functional Loss - USP20 ENSG00000136878 CDS Human protein_coding chr9:132630352 chr9:132630355 synonymous SNV . 0 24 hm5C_associated_SNPs_97507 0 0 1 0 1 USP20 chr9:132630284 3'AG 132630284 Downstream 72bp
chr19 49920497 49920497 1 + G T OV 49920495 + 49920475 49920515 41 TCAGGAGGAGGGCCTGGGGCCAGCTCTGCCTGCCCCCACAG TCAGGAGGAGGGCCTGGGGCCATCTCTGCCTGCCCCCACAG < 41bp 0.701623783040448 0.336449357721001 0.29531142 0.16380212 prediction 0.403247566080897 Functional Loss - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49920495 chr19:49920497 nonsynonymous SNV 0.107 0 23 hm5C_associated_SNPs_97511 0 0 0 0 2 CCDC155 chr19:49920416 3'AG 49920416 Downstream 82bp
chr19 49920497 49920497 1 + G T OV 49920495 + 49920475 49920515 41 TCAGGAGGAGGGCCTGGGGCCAGCTCTGCCTGCCCCCACAG TCAGGAGGAGGGCCTGGGGCCATCTCTGCCTGCCCCCACAG < 41bp 0.701623783040448 0.336449357721001 0.29531142 0.16380212 prediction 0.403247566080897 Functional Loss - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49920495 chr19:49920497 nonsynonymous SNV 0.107 0 23 hm5C_associated_SNPs_97511 0 0 0 0 2 CCDC155 chr19:49920523 5'GT 49920523 Upstream 27bp
chr21 45739985 45739985 1 + G A GBM 45739982 + 45739962 45740002 41 TCCAGGAGCTTCGAGAACAACTGGAACATTTACAAGCTCCT TCCAGGAGCTTCGAGAACAACTGAAACATTTACAAGCTCCT < 41bp 0.701623373565552 0.46680345039545 0.8023188 0.92359746 prediction 0.403246747131104 Functional Loss - PFKL ENSG00000141959 CDS Human protein_coding chr21:45739982 chr21:45739985 stopgain 1.000 1 24 hm5C_associated_SNPs_97512 0 0 1 0 2 PFKL chr21:45739967 3'AG 45739967 Downstream 19bp
chr21 45739985 45739985 1 + G A GBM 45739982 + 45739962 45740002 41 TCCAGGAGCTTCGAGAACAACTGGAACATTTACAAGCTCCT TCCAGGAGCTTCGAGAACAACTGAAACATTTACAAGCTCCT < 41bp 0.701623373565552 0.46680345039545 0.8023188 0.92359746 prediction 0.403246747131104 Functional Loss - PFKL ENSG00000141959 CDS Human protein_coding chr21:45739982 chr21:45739985 stopgain 1.000 1 24 hm5C_associated_SNPs_97512 0 0 1 0 2 PFKL chr21:45740030 5'GT 45740030 Upstream 46bp
chr10 115534679 115534679 1 + G A LUSC 115534676 + 115534656 115534696 41 AGGATGGGGACCTCCACCTGCAAGAACAAGGCTCAGGAATT AGGATGGGGACCTCCACCTGCAAAAACAAGGCTCAGGAATT < 41bp 0.701618973896145 0.466132641193166 0.5595273 0.1282399 prediction 0.40323794779229 Functional Loss - PLEKHS1 ENSG00000148735 CDS Human protein_coding chr10:115534676 chr10:115534679 nonsynonymous SNV 0.387 0 24 hm5C_associated_SNPs_97518 0 0 0 0 2 PLEKHS1 chr10:115534585 3'AG 115534585 Downstream 95bp
chr10 115534679 115534679 1 + G A LUSC 115534676 + 115534656 115534696 41 AGGATGGGGACCTCCACCTGCAAGAACAAGGCTCAGGAATT AGGATGGGGACCTCCACCTGCAAAAACAAGGCTCAGGAATT < 41bp 0.701618973896145 0.466132641193166 0.5595273 0.1282399 prediction 0.40323794779229 Functional Loss - PLEKHS1 ENSG00000148735 CDS Human protein_coding chr10:115534676 chr10:115534679 nonsynonymous SNV 0.387 0 24 hm5C_associated_SNPs_97518 0 0 0 0 2 PLEKHS1 chr10:115534752 5'GT 115534752 Upstream 74bp
chr19 19351491 19351491 1 + G T LUSC 19351488 + 19351468 19351508 41 TTCCAGTGGACGGACAACACCGGGCTGGTGAGTGGCAGGGG TTCCAGTGGACGGACAACACCGGTCTGGTGAGTGGCAGGGG < 41bp 0.701615857280581 0.295226842692949 0.8911637 0.63453794 prediction 0.403231714561162 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19351488 chr19:19351491 synonymous SNV . 0 24 hm5C_associated_SNPs_97519 0 0 0 0 2 NCAN chr19:19351412 3'AG 19351412 Downstream 80bp
chr19 19351491 19351491 1 + G T LUSC 19351488 + 19351468 19351508 41 TTCCAGTGGACGGACAACACCGGGCTGGTGAGTGGCAGGGG TTCCAGTGGACGGACAACACCGGTCTGGTGAGTGGCAGGGG < 41bp 0.701615857280581 0.295226842692949 0.8911637 0.63453794 prediction 0.403231714561162 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19351488 chr19:19351491 synonymous SNV . 0 24 hm5C_associated_SNPs_97519 0 0 0 0 2 NCAN chr19:19351494 5'GT 19351494 Upstream 4bp
chr10 3124623 3124623 1 + C T CESC 3124620 + 3124600 3124640 41 GCCGTGGTGCGCATGGGTATCTACGTGGGGGCCAAGGTGTA GCCGTGGTGCGCATGGGTATCTATGTGGGGGCCAAGGTGTA < 41bp 0.703602472119031 0.501991547326238 0.45537123 0.5109043 prediction 0.403221849585586 Functional Loss - PFKP ENSG00000067057 CDS Human protein_coding chr10:3124620 chr10:3124623 nonsynonymous SNV 0.977 2 24 hm5C_associated_SNPs_97523 0 0 1 0 2 PFKP chr10:3124580 3'AG 3124580 Downstream 44bp
chr10 3124623 3124623 1 + C T CESC 3124620 + 3124600 3124640 41 GCCGTGGTGCGCATGGGTATCTACGTGGGGGCCAAGGTGTA GCCGTGGTGCGCATGGGTATCTATGTGGGGGCCAAGGTGTA < 41bp 0.703602472119031 0.501991547326238 0.45537123 0.5109043 prediction 0.403221849585586 Functional Loss - PFKP ENSG00000067057 CDS Human protein_coding chr10:3124620 chr10:3124623 nonsynonymous SNV 0.977 2 24 hm5C_associated_SNPs_97523 0 0 1 0 2 PFKP chr10:3124653 5'GT 3124653 Upstream 31bp
chr2 128380870 128380870 1 + G A SKCM 128380867 + 128380847 128380887 41 TGGACTCAGCCTCCACATCTCGGGAAATGTGCATGCACATC TGGACTCAGCCTCCACATCTCGGAAAATGTGCATGCACATC < 41bp 0.828498339460478 0.626887693125911 0.93971354 0.7326517 prediction 0.403221292669133 Functional Loss - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128380867 chr2:128380870 nonsynonymous SNV 0.017 4 24 hm5C_associated_SNPs_97524 0 0 0 0 2 MYO7B chr2:128380777 3'AG 128380777 Downstream 94bp
chr2 128380870 128380870 1 + G A SKCM 128380867 + 128380847 128380887 41 TGGACTCAGCCTCCACATCTCGGGAAATGTGCATGCACATC TGGACTCAGCCTCCACATCTCGGAAAATGTGCATGCACATC < 41bp 0.828498339460478 0.626887693125911 0.93971354 0.7326517 prediction 0.403221292669133 Functional Loss - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128380867 chr2:128380870 nonsynonymous SNV 0.017 4 24 hm5C_associated_SNPs_97524 0 0 0 0 2 MYO7B chr2:128380950 5'GT 128380950 Upstream 81bp
chr9 139873744 139873744 1 + G A SKCM 139873741 + 139873721 139873761 41 TCCCTCGGCTCCTACAGCTACCGGAGTCCCCGTGAGTGGGG TCCCTCGGCTCCTACAGCTACCGAAGTCCCCGTGAGTGGGG < 41bp 0.824097085073788 0.622487771057686 0.5432639 0.19753489 prediction 0.403218628032204 Functional Loss - PTGDS ENSG00000107317 CDS Human protein_coding chr9:139873741 chr9:139873744 synonymous SNV . 0 24 hm5C_associated_SNPs_97525 0 0 1 0 2 PTGDS chr9:139873675 3'AG 139873675 Downstream 70bp
chr9 139873744 139873744 1 + G A SKCM 139873741 + 139873721 139873761 41 TCCCTCGGCTCCTACAGCTACCGGAGTCCCCGTGAGTGGGG TCCCTCGGCTCCTACAGCTACCGAAGTCCCCGTGAGTGGGG < 41bp 0.824097085073788 0.622487771057686 0.5432639 0.19753489 prediction 0.403218628032204 Functional Loss - PTGDS ENSG00000107317 CDS Human protein_coding chr9:139873741 chr9:139873744 synonymous SNV . 0 24 hm5C_associated_SNPs_97525 0 0 1 0 2 PTGDS chr9:139873751 5'GT 139873751 Upstream 8bp
chr1 46871713 46871713 1 + G A rs72480613 46871710 + 46871690 46871730 41 ATCTTATGTTTCTTATCCAGCAAGAGTGGCCTGAAGGGCTG ATCTTATGTTTCTTATCCAGCAAAAGTGGCCTGAAGGGCTG < 41bp 0.818657703698274 0.617052356099529 0.38901424 0.21936119 prediction 0.403210695197489 Functional Loss - FAAH ENSG00000117480 CDS Human protein_coding chr1:46871710 chr1:46871713 synonymous SNV . 0 24 hm5C_associated_SNPs_97527 0 0 1 0 2 FAAH chr1:46871710 3'AG 46871710 Downstream 4bp
chr1 46871713 46871713 1 + G A rs72480613 46871710 + 46871690 46871730 41 ATCTTATGTTTCTTATCCAGCAAGAGTGGCCTGAAGGGCTG ATCTTATGTTTCTTATCCAGCAAAAGTGGCCTGAAGGGCTG < 41bp 0.818657703698274 0.617052356099529 0.38901424 0.21936119 prediction 0.403210695197489 Functional Loss - FAAH ENSG00000117480 CDS Human protein_coding chr1:46871710 chr1:46871713 synonymous SNV . 0 24 hm5C_associated_SNPs_97527 0 0 1 0 2 FAAH chr1:46871750 5'GT 46871750 Upstream 38bp
chr1 182783967 182783967 1 + C T UCEC 182783964 + 182783944 182783984 41 TGATGGCATCGCTGTCATTGCACCGTTCTTCCTCAAGCCAT TGATGGCATCGCTGTCATTGCACTGTTCTTCCTCAAGCCAT < 41bp 0.758624403081082 0.557022365986975 0.14744115 0.0805856 prediction 0.403204074188215 Functional Loss - NPL ENSG00000135838 CDS Human protein_coding chr1:182783964 chr1:182783967 nonsynonymous SNV 0.947 5 24 hm5C_associated_SNPs_97530 0 0 0 2 2 NPL chr1:182783918 3'AG 182783918 Downstream 50bp
chr1 182783967 182783967 1 + C T UCEC 182783964 + 182783944 182783984 41 TGATGGCATCGCTGTCATTGCACCGTTCTTCCTCAAGCCAT TGATGGCATCGCTGTCATTGCACTGTTCTTCCTCAAGCCAT < 41bp 0.758624403081082 0.557022365986975 0.14744115 0.0805856 prediction 0.403204074188215 Functional Loss - NPL ENSG00000135838 CDS Human protein_coding chr1:182783964 chr1:182783967 nonsynonymous SNV 0.947 5 24 hm5C_associated_SNPs_97530 0 0 0 2 2 NPL chr1:182783993 5'GT 182783993 Upstream 27bp
chr22 20909268 20909268 1 + G A BLCA 20909265 + 20909245 20909285 41 CCTGACTGGCGGACCTGCTGCGGGAGCCGCTGGAATTGGCA CCTGACTGGCGGACCTGCTGCGGAAGCCGCTGGAATTGGCA < 41bp 0.810473040210942 0.608873099377095 0.9274589 0.8765068 prediction 0.403199881667693 Functional Loss - MED15 ENSG00000099917 CDS Human protein_coding chr22:20909265 chr22:20909268 nonsynonymous SNV 0.199 5 24 hm5C_associated_SNPs_97532 0 0 1 0 1 MED15 chr22:20909223 3'AG 20909223 Downstream 46bp
chr22 24916415 24916415 1 + C T BLCA 24916412 + 24916392 24916432 41 ATTGCCAATCACTGCTTCACCTGCGCCATCAATCGAGTGGG ATTGCCAATCACTGCTTCACCTGTGCCATCAATCGAGTGGG < 41bp 0.757844011767329 0.556248656993941 0.053177893 0.018826962 prediction 0.403190709546775 Functional Loss - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24916412 chr22:24916415 synonymous SNV . 0 24 hm5C_associated_SNPs_97533 0 0 0 0 2 UPB1 chr22:24916355 3'AG 24916355 Downstream 61bp
chr22 24916415 24916415 1 + C T BLCA 24916412 + 24916392 24916432 41 ATTGCCAATCACTGCTTCACCTGCGCCATCAATCGAGTGGG ATTGCCAATCACTGCTTCACCTGTGCCATCAATCGAGTGGG < 41bp 0.757844011767329 0.556248656993941 0.053177893 0.018826962 prediction 0.403190709546775 Functional Loss - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24916412 chr22:24916415 synonymous SNV . 0 24 hm5C_associated_SNPs_97533 0 0 0 0 2 UPB1 chr22:24916436 5'GT 24916436 Upstream 22bp
chr6 44118015 44118015 1 + G T LUAD 44118012 + 44117992 44118032 41 TGCTACACTTTCCTCATCTTCATGGTGCTGCTCCTACCCTC TGCTACACTTTCCTCATCTTCATTGTGCTGCTCCTACCCTC < 41bp 0.701592281105609 0.29255392708144 0.23201707 0.13872623 prediction 0.403184562211218 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44118012 chr6:44118015 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_97535 0 0 1 9 2 TMEM63B chr6:44117961 3'AG 44117961 Downstream 55bp
chr6 44118015 44118015 1 + G T LUAD 44118012 + 44117992 44118032 41 TGCTACACTTTCCTCATCTTCATGGTGCTGCTCCTACCCTC TGCTACACTTTCCTCATCTTCATTGTGCTGCTCCTACCCTC < 41bp 0.701592281105609 0.29255392708144 0.23201707 0.13872623 prediction 0.403184562211218 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44118012 chr6:44118015 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_97535 0 0 1 9 2 TMEM63B chr6:44118047 5'GT 44118047 Upstream 33bp
chr10 112359426 112359426 1 + G T LGG 112359424 + 112359404 112359444 41 TCATATAGCAACGTAGCTTACAGAGTTTGGAGGCAAGCTTG TCATATAGCAACGTAGCTTACATAGTTTGGAGGCAAGCTTG < 41bp 0.701591960839688 0.348974963016816 0.9044683 0.3761728 prediction 0.403183921679376 Functional Loss - SMC3 ENSG00000108055 CDS Human protein_coding chr10:112359424 chr10:112359426 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_97536 0 0 1 0 1 SMC3 chr10:112359412 3'AG 112359412 Downstream 15bp
chr12 58019389 58019389 1 + G T SARC 58019386 + 58019366 58019406 41 CTTGGTGCAGGGGACACTGACCCGGGTAGGACTCCTGGACA CTTGGTGCAGGGGACACTGACCCTGGTAGGACTCCTGGACA < 41bp 0.701591370312427 0.314900789486888 0.3425241 0.117921025 prediction 0.403182740624855 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58019386 chr12:58019389 nonsynonymous SNV 0.971 2 24 hm5C_associated_SNPs_97538 0 0 0 0 1 SLC26A10 chr12:58019365 3'AG 58019365 Downstream 25bp
chr1 245006439 245006439 1 + C T rs1053697 245006437 + 245006417 245006457 41 TATTATATGAAGGTACCCACCTCGATCCTGAAAGAAAACAC TATTATATGAAGGTACCCACCTTGATCCTGAAAGAAAACAC < 41bp 0.876260805198487 0.674672380947108 0.23740107 0.013619065 prediction 0.403176848502757 Functional Loss - COX20 ENSG00000203667 CDS Human protein_coding chr1:245006437 chr1:245006439 synonymous SNV . 0 23 hm5C_associated_SNPs_97542 1 0 1 0 1 COX20 chr1:245006343 3'AG 245006343 Downstream 97bp
chr3 184009860 184009860 1 + C T GBM 184009858 + 184009838 184009878 41 CCTGGCCCGCAGGTGTGGTGCTCGGTCCGCACACCAGAGAG CCTGGCCCGCAGGTGTGGTGCTTGGTCCGCACACCAGAGAG < 41bp 0.84399607025947 0.642411248967931 0.10920048 0.116419464 prediction 0.403169642583078 Functional Loss - ECE2 ENSG00000145194 CDS Human protein_coding chr3:184009858 chr3:184009860 nonsynonymous SNV 0.974 5 23 hm5C_associated_SNPs_97550 0 0 0 0 1 ECE2 chr3:184009850 3'AG 184009850 Downstream 11bp
chr7 55259451 55259451 1 + G A LGG 55259448 + 55259428 55259468 41 AGGACCGTCGCTTGGTGCACCGCGACCTGGCAGCCAGGAAC AGGACCGTCGCTTGGTGCACCGCAACCTGGCAGCCAGGAAC < 41bp 0.701580996117093 0.457690947030404 0.29751432 0.101020426 prediction 0.403161992234185 Functional Loss - EGFR ENSG00000146648 CDS Human protein_coding chr7:55259448 chr7:55259451 nonsynonymous SNV 0.962 2 24 hm5C_associated_SNPs_97554 0 0 1 0 1 EGFR chr7:55259412 3'AG 55259412 Downstream 40bp
chr4 42964927 42964927 1 + G A SKCM 42964924 + 42964904 42964944 41 TTCAGCAACCATCAACTGATCTAGAATTTGACCGTGTAGTG TTCAGCAACCATCAACTGATCTAAAATTTGACCGTGTAGTG < 41bp 0.791681041532303 0.590104297113587 0.08344403 0.08574307 prediction 0.403153488837431 Functional Loss - GRXCR1 ENSG00000215203 CDS Human protein_coding chr4:42964924 chr4:42964927 nonsynonymous SNV 0.953 3 24 hm5C_associated_SNPs_97555 0 0 0 0 1 GRXCR1 chr4:42964909 3'AG 42964909 Downstream 19bp
chr8 94717212 94717212 1 + C T UCEC 94717209 + 94717189 94717229 41 CTCAGTTAGAAAGAACACGTCAGCGAAACCCATCTGATCGA CTCAGTTAGAAAGAACACGTCAGTGAAACCCATCTGATCGA < 41bp 0.70157446834776 0.485836307550068 0.21944559 0.22333446 prediction 0.403148936695521 Functional Loss - FAM92A ENSG00000188343 CDS Human protein_coding chr8:94717209 chr8:94717212 stopgain 0.988 1 24 hm5C_associated_SNPs_97559 0 0 0 2 1 FAM92A chr8:94717137 3'AG 94717137 Downstream 76bp
chr15 38591612 38591612 1 + G C LUSC 38591611 + 38591591 38591631 41 TGCGAGCTGTGGTGATGACCCGAGATGACTCAAGTGGTGGA TGCGAGCTGTGGTGATGACCCCAGATGACTCAAGTGGTGGA < 41bp 0.893230417374579 0.691657704677929 0.36836612 0.30283445 prediction 0.403145425393298 Functional Loss - SPRED1 ENSG00000166068 CDS Human protein_coding chr15:38591611 chr15:38591612 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_97561 0 0 1 0 1 SPRED1 chr15:38591574 3'AG 38591574 Downstream 39bp
chr11 63987235 63987235 1 + G T SARC 63987231 + 63987211 63987251 41 GGACAGCCTCACCACCATCCCAGAGCTCAAGGACCATCTCC GGACAGCCTCACCACCATCCCAGATCTCAAGGACCATCTCC < 41bp 0.701571471354046 0.486102300849621 0.21621081 0.08773884 prediction 0.403142942708091 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63987231 chr11:63987235 nonsynonymous SNV 0.989 1 25 hm5C_associated_SNPs_97562 0 0 1 0 2 FERMT3 chr11:63987212 3'AG 63987212 Downstream 24bp
chr11 63987235 63987235 1 + G T SARC 63987231 + 63987211 63987251 41 GGACAGCCTCACCACCATCCCAGAGCTCAAGGACCATCTCC GGACAGCCTCACCACCATCCCAGATCTCAAGGACCATCTCC < 41bp 0.701571471354046 0.486102300849621 0.21621081 0.08773884 prediction 0.403142942708091 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63987231 chr11:63987235 nonsynonymous SNV 0.989 1 25 hm5C_associated_SNPs_97562 0 0 1 0 2 FERMT3 chr11:63987261 5'GT 63987261 Upstream 27bp
chr7 116862962 116862962 1 + G A CESC 116862959 + 116862939 116862979 41 GAGTTCAGGGACTGGAATTGCAAGAGTATTTTCATGCGTGT GAGTTCAGGGACTGGAATTGCAAAAGTATTTTCATGCGTGT < 41bp 0.768263622813321 0.566693887454742 0.80315197 0.43777224 prediction 0.403139470717158 Functional Loss - ST7 ENSG00000004866 CDS Human protein_coding chr7:116862959 chr7:116862962 synonymous SNV . 0 24 hm5C_associated_SNPs_97563 0 0 0 0 1 ST7 chr7:116862915 3'AG 116862915 Downstream 48bp
chr9 82333807 82333807 1 + C T GBM 82333805 + 82333785 82333825 41 AACCCCACGAGACACGTGTACACGGGTGGGAAGGGCTGCGT AACCCCACGAGACACGTGTACATGGGTGGGAAGGGCTGCGT < 41bp 0.868888621430289 0.667319219855136 0.17555481 0.1908007 prediction 0.403138803150306 Functional Loss - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82333805 chr9:82333807 nonsynonymous SNV 0.762 4 23 hm5C_associated_SNPs_97564 0 0 1 0 1 TLE4 chr9:82333886 5'GT 82333886 Upstream 80bp
chr7 142637443 142637443 1 + G T UCEC 142637441 + 142637421 142637461 41 CCTTTTCCCCTGTTCCAGACCAGAATCAAGAACAGTTCGAA CCTTTTCCCCTGTTCCAGACCATAATCAAGAACAGTTCGAA < 41bp 0.701565911443803 0.353886678162395 0.22812325 0.06630039 prediction 0.403131822887606 Functional Loss - C7orf34 ENSG00000165131 CDS Human protein_coding chr7:142637441 chr7:142637443 nonsynonymous SNV 0.470 3 23 hm5C_associated_SNPs_97566 0 0 0 0 1 C7orf34 chr7:142637439 3'AG 142637439 Downstream 5bp
chr21 34660452 34660452 1 + G A UCEC 34660449 + 34660429 34660469 41 GTGGCCGTCATCCTCATGGCCTCGGTCTTCATGGTCTGCCT GTGGCCGTCATCCTCATGGCCTCAGTCTTCATGGTCTGCCT < 41bp 0.833131363443355 0.631566577237533 0.018616885 0.019421875 prediction 0.403129572411643 Functional Loss - IL10RB ENSG00000243646 CDS Human protein_coding chr21:34660449 chr21:34660452 synonymous SNV . 0 24 hm5C_associated_SNPs_97567 0 0 1 0 1 IL10RB chr21:34660409 3'AG 34660409 Downstream 44bp
chr16 30997087 30997087 1 + C T BLCA 30997085 + 30997065 30997105 41 TGCTGCAGCGGGAGCCCCGGCTCGGGGAGCTGCGGGTCTTT TGCTGCAGCGGGAGCCCCGGCTTGGGGAGCTGCGGGTCTTT < 41bp 0.836827721953831 0.635263230686377 0.2889501 0.5934452 prediction 0.403128982534907 Functional Loss - HSD3B7 ENSG00000099377;ENSG00000268863 CDS Human other chr16:30997085 chr16:30997087 synonymous SNV . 0 23 hm5C_associated_SNPs_97568 0 0 1 0 1 HSD3B7 chr16:30997145 5'GT 30997145 Upstream 59bp
chrX 152771381 152771381 1 + C T READ 152771378 + 152771358 152771398 41 ATGAGAAGGCCTTCAGCCCACTGCGGAAGCTGCAGAAGCTC ATGAGAAGGCCTTCAGCCCACTGTGGAAGCTGCAGAAGCTC < 41bp 0.70156430944561 0.488309414208736 0.6500766 0.18582875 prediction 0.40312861889122 Functional Loss - BGN ENSG00000182492 CDS Human protein_coding chrX:152771378 chrX:152771381 nonsynonymous SNV 0.988 3 24 hm5C_associated_SNPs_97569 0 0 0 0 1 BGN chrX:152771321 3'AG 152771321 Downstream 61bp
chr8 38095669 38095669 1 + G T COAD 38095667 + 38095647 38095687 41 GGGGTTCAACACCCACGGAGCAGGGTCGACCAAGAACTGTG GGGGTTCAACACCCACGGAGCATGGTCGACCAAGAACTGTG < 41bp 0.701562348714018 0.344873572468187 0.70342505 0.13340682 prediction 0.403124697428036 Functional Loss - DDHD2 ENSG00000085788 CDS Human protein_coding chr8:38095667 chr8:38095669 nonsynonymous SNV 0.684 4 23 hm5C_associated_SNPs_97571 0 0 1 0 2 DDHD2 chr8:38095607 3'AG 38095607 Downstream 63bp
chr8 38095669 38095669 1 + G T COAD 38095667 + 38095647 38095687 41 GGGGTTCAACACCCACGGAGCAGGGTCGACCAAGAACTGTG GGGGTTCAACACCCACGGAGCATGGTCGACCAAGAACTGTG < 41bp 0.701562348714018 0.344873572468187 0.70342505 0.13340682 prediction 0.403124697428036 Functional Loss - DDHD2 ENSG00000085788 CDS Human protein_coding chr8:38095667 chr8:38095669 nonsynonymous SNV 0.684 4 23 hm5C_associated_SNPs_97571 0 0 1 0 2 DDHD2 chr8:38095727 5'GT 38095727 Upstream 59bp
chr17 34313674 34313674 1 - G A rs113937434 34313677 - 34313657 34313697 41 GCTTCCCACAGCATGAAGATCTCCGTGGCTGCCATTCCCTT GCTTCCCACAGCATGAAGATCTCTGTGGCTGCCATTCCCTT < 41bp 0.762214127179502 0.560652436322255 0.7527514 0.36041045 prediction 0.403123381714493 Functional Loss - CCL14 ENSG00000213494;ENSG00000266956 CDS Human other chr17:34313677 chr17:34313674 synonymous SNV . 0 24 hm5C_associated_SNPs_97572 0 0 0 0 2 CCL14 chr17:34313607 5'GT 34313607 Upstream 68bp
chr17 34313674 34313674 1 - G A rs113937434 34313677 - 34313657 34313697 41 GCTTCCCACAGCATGAAGATCTCCGTGGCTGCCATTCCCTT GCTTCCCACAGCATGAAGATCTCTGTGGCTGCCATTCCCTT < 41bp 0.762214127179502 0.560652436322255 0.7527514 0.36041045 prediction 0.403123381714493 Functional Loss - CCL14 ENSG00000213494;ENSG00000266956 CDS Human other chr17:34313677 chr17:34313674 synonymous SNV . 0 24 hm5C_associated_SNPs_97572 0 0 0 0 2 CCL15-CCL14 chr17:34313740 3'AG 34313740 Downstream 67bp
chr7 73960133 73960133 1 + C T STAD 73960131 + 73960111 73960151 41 GGTGGAGCTGCTCTTCAACACACGATACGGTGAGCAAGAAG GGTGGAGCTGCTCTTCAACACATGATACGGTGAGCAAGAAG < 41bp 0.862011756763447 0.660452442291941 0.06246817 0.13079742 prediction 0.403118628943012 Functional Loss - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73960131 chr7:73960133 stopgain 0.019 0 23 hm5C_associated_SNPs_97574 0 0 1 0 2 GTF2IRD1 chr7:73960074 3'AG 73960074 Downstream 60bp
chr7 73960133 73960133 1 + C T STAD 73960131 + 73960111 73960151 41 GGTGGAGCTGCTCTTCAACACACGATACGGTGAGCAAGAAG GGTGGAGCTGCTCTTCAACACATGATACGGTGAGCAAGAAG < 41bp 0.862011756763447 0.660452442291941 0.06246817 0.13079742 prediction 0.403118628943012 Functional Loss - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73960131 chr7:73960133 stopgain 0.019 0 23 hm5C_associated_SNPs_97574 0 0 1 0 2 GTF2IRD1 chr7:73960139 5'GT 73960139 Upstream 7bp
chr14 24843620 24843620 1 + T C rs2295298 24843619 + 24843599 24843639 41 AGGCGAGGAACTGGTACTGACTGGCTCCAACTTCCTGCCAG AGGCGAGGAACTGGTACTGACCGGCTCCAACTTCCTGCCAG < 41bp 0.769489663830074 0.567933537406707 0.3795823 0.3024612 prediction 0.403112252846734 Functional Loss - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24843619 chr14:24843620 synonymous SNV . 0 22 hm5C_associated_SNPs_97575 0 0 0 0 1 NFATC4 chr14:24843532 3'AG 24843532 Downstream 89bp
chr3 185341799 185341799 1 + G A SKCM 185341796 + 185341776 185341816 41 TGCTTTTTAGTCAGTATTTACAGGATGAAAGTAAGACCAAA TGCTTTTTAGTCAGTATTTACAGAATGAAAGTAAGACCAAA < 41bp 0.770002321506966 0.568446449834997 0.5981596 0.18905881 prediction 0.403111743343938 Functional Loss - SENP2 ENSG00000163904 CDS Human protein_coding chr3:185341796 chr3:185341799 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_97576 0 0 1 0 2 SENP2 chr3:185341786 3'AG 185341786 Downstream 14bp
chr3 185341799 185341799 1 + G A SKCM 185341796 + 185341776 185341816 41 TGCTTTTTAGTCAGTATTTACAGGATGAAAGTAAGACCAAA TGCTTTTTAGTCAGTATTTACAGAATGAAAGTAAGACCAAA < 41bp 0.770002321506966 0.568446449834997 0.5981596 0.18905881 prediction 0.403111743343938 Functional Loss - SENP2 ENSG00000163904 CDS Human protein_coding chr3:185341796 chr3:185341799 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_97576 0 0 1 0 2 SENP2 chr3:185341870 5'GT 185341870 Upstream 72bp
chr3 112068651 112068651 1 + C T SKCM 112068648 + 112068628 112068668 41 TCTTACTGTACTGGAAACGTCACCGGAATCAGGACCGAGGT TCTTACTGTACTGGAAACGTCACTGGAATCAGGACCGAGGT < 41bp 0.701554790796019 0.472707183940958 0.07543254 0.07950625 prediction 0.403109581592039 Functional Loss - CD200 ENSG00000091972 CDS Human protein_coding chr3:112068648 chr3:112068651 nonsynonymous SNV 0.976 3 24 hm5C_associated_SNPs_97577 0 0 0 0 1 CD200 chr3:112068559 3'AG 112068559 Downstream 93bp
chrX 108780209 108780209 1 + C T UCEC 108780206 + 108780186 108780226 41 AGGAGGTAGTGACGCCGACACTGCCAGAACACACTGCTACA AGGAGGTAGTGACGCCGACACTGTCAGAACACACTGCTACA < 41bp 0.750189499120419 0.548636681946132 0.03785661 0.024827123 prediction 0.403105634348573 Functional Loss - NXT2 ENSG00000101888 CDS Human protein_coding chrX:108780206 chrX:108780209 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_97578 0 0 0 0 2 NXT2 chrX:108780166 3'AG 108780166 Downstream 44bp
chrX 108780209 108780209 1 + C T UCEC 108780206 + 108780186 108780226 41 AGGAGGTAGTGACGCCGACACTGCCAGAACACACTGCTACA AGGAGGTAGTGACGCCGACACTGTCAGAACACACTGCTACA < 41bp 0.750189499120419 0.548636681946132 0.03785661 0.024827123 prediction 0.403105634348573 Functional Loss - NXT2 ENSG00000101888 CDS Human protein_coding chrX:108780206 chrX:108780209 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_97578 0 0 0 0 2 NXT2 chrX:108780250 5'GT 108780250 Upstream 42bp
chr9 95773515 95773515 1 + C T SKCM 95773512 + 95773492 95773532 41 GCAGGGTCCTTGGAGCTCATCTCCACAGCCGCCAACCACTC GCAGGGTCCTTGGAGCTCATCTCTACAGCCGCCAACCACTC < 41bp 0.790877826178568 0.589328076903568 0.97085273 0.9307245 prediction 0.40309949855 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95773512 chr9:95773515 synonymous SNV . 0 24 hm5C_associated_SNPs_97580 0 0 0 0 1 FGD3 chr9:95773554 5'GT 95773554 Upstream 40bp
chr1 231902976 231902976 1 + G A SKCM 231902973 + 231902953 231902993 41 GACAGCTTGCACGTGTCCATCACGAGACGAGACTGGCTTCT GACAGCTTGCACGTGTCCATCACAAGACGAGACTGGCTTCT < 41bp 0.780569069816094 0.57901987199311 0.92321134 0.87918305 prediction 0.403098395645969 Functional Loss - DISC1 ENSG00000162946 CDS Human protein_coding chr1:231902973 chr1:231902976 synonymous SNV . 0 24 hm5C_associated_SNPs_97581 0 0 1 0 2 DISC1 chr1:231902886 3'AG 231902886 Downstream 91bp
chr1 231902976 231902976 1 + G A SKCM 231902973 + 231902953 231902993 41 GACAGCTTGCACGTGTCCATCACGAGACGAGACTGGCTTCT GACAGCTTGCACGTGTCCATCACAAGACGAGACTGGCTTCT < 41bp 0.780569069816094 0.57901987199311 0.92321134 0.87918305 prediction 0.403098395645969 Functional Loss - DISC1 ENSG00000162946 CDS Human protein_coding chr1:231902973 chr1:231902976 synonymous SNV . 0 24 hm5C_associated_SNPs_97581 0 0 1 0 2 DISC1 chr1:231903015 5'GT 231903015 Upstream 40bp
chr16 33572078 33572078 1 + C T rs561102634 33572076 + 33572056 33572096 41 GGCCCGAGATGGGGTGAAGGCACGCTACATGACCCCCGCCT GGCCCGAGATGGGGTGAAGGCATGCTACATGACCCCCGCCT < 41bp 0.780828234194529 0.579279318571229 0.075151324 0.04955274 prediction 0.4030978312466 Functional Loss - ENPP7P13 ENSG00000261580 ncRNA_exonic Human processed_pseudogene chr16:33572076 chr16:33572078 . . 0 23 hm5C_associated_SNPs_97582 0 0 0 0 1 ENPP7P13 chr16:33572138 5'GT 33572138 Upstream 61bp
chr3 183899783 183899783 1 + A T CESC 183899781 + 183899761 183899801 41 GGACGCACCAAACTGGAGGTCAAGGTGGTCATCAAGTCCAA GGACGCACCAAACTGGAGGTCATGGTGGTCATCAAGTCCAA < 41bp 0.752734429650271 0.551188931644782 0.3966097 0.36553028 prediction 0.403090996010979 Functional Loss - AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899781 chr3:183899783 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_97584 0 0 1 0 2 AP2M1 chr3:183899700 3'AG 183899700 Downstream 84bp
chr3 183899783 183899783 1 + A T CESC 183899781 + 183899761 183899801 41 GGACGCACCAAACTGGAGGTCAAGGTGGTCATCAAGTCCAA GGACGCACCAAACTGGAGGTCATGGTGGTCATCAAGTCCAA < 41bp 0.752734429650271 0.551188931644782 0.3966097 0.36553028 prediction 0.403090996010979 Functional Loss - AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899781 chr3:183899783 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_97584 0 0 1 0 2 AP2M1 chr3:183899835 5'GT 183899835 Upstream 53bp
chr22 44967977 44967977 1 + G A rs11912131 44967974 + 44967954 44967994 41 GAGTCAGTTCTGCTCTGAGACGTGAGGCTCAGAATCAGATG GAGTCAGTTCTGCTCTGAGACGTAAGGCTCAGAATCAGATG < 41bp 0.815046121189374 0.613501354635052 0.20109373 0.10963425 prediction 0.403089533108644 Functional Loss - LINC00207 ENSG00000187012 ncRNA_exonic Human lincRNA chr22:44967974 chr22:44967977 . . 0 24 hm5C_associated_SNPs_97587 0 0 0 0 1 LINC00207 chr22:44967919 3'AG 44967919 Downstream 59bp
chr1 171300852 171300852 1 + C T SARC 171300850 + 171300830 171300870 41 CAGAAGGCTTTCAGGGCAAACGCGTCTTGGTGATTGGTCTT CAGAAGGCTTTCAGGGCAAACGTGTCTTGGTGATTGGTCTT < 41bp 0.70154443049225 0.418148131964061 0.5306512 0.4218155 prediction 0.403088860984501 Functional Loss - FMO4 ENSG00000076258 CDS Human protein_coding chr1:171300850 chr1:171300852 synonymous SNV . 0 23 hm5C_associated_SNPs_97588 0 0 0 0 2 FMO4 chr1:171300779 3'AG 171300779 Downstream 74bp
chr1 171300852 171300852 1 + C T SARC 171300850 + 171300830 171300870 41 CAGAAGGCTTTCAGGGCAAACGCGTCTTGGTGATTGGTCTT CAGAAGGCTTTCAGGGCAAACGTGTCTTGGTGATTGGTCTT < 41bp 0.70154443049225 0.418148131964061 0.5306512 0.4218155 prediction 0.403088860984501 Functional Loss - FMO4 ENSG00000076258 CDS Human protein_coding chr1:171300850 chr1:171300852 synonymous SNV . 0 23 hm5C_associated_SNPs_97588 0 0 0 0 2 FMO4 chr1:171300921 5'GT 171300921 Upstream 70bp
chr3 51661637 51661637 1 + C T rs191989141 51661635 + 51661615 51661655 41 AGAAGATGGGCAGCAGCCGCCGCGGTGCACTTCAACTACCT AGAAGATGGGCAGCAGCCGCCGTGGTGCACTTCAACTACCT < 41bp 0.701541996779405 0.438856216930138 0.15988475 0.06726876 prediction 0.40308399355881 Functional Loss - RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51661635 chr3:51661637 nonsynonymous SNV 0.984 3 23 hm5C_associated_SNPs_97591 0 0 1 0 1 RAD54L2 chr3:51661569 3'AG 51661569 Downstream 69bp
chr21 44437109 44437109 1 + C T UCEC 44437106 + 44437086 44437126 41 GCAGGGAAACGTAGCCATGGCGACGGTGGCAGGTACGATGA GCAGGGAAACGTAGCCATGGCGATGGTGGCAGGTACGATGA < 41bp 0.777613590354529 0.576072874200793 0.228594 0.29152364 prediction 0.403081432307473 Functional Loss - PKNOX1 ENSG00000160199 CDS Human protein_coding chr21:44437106 chr21:44437109 nonsynonymous SNV 0.448 4 24 hm5C_associated_SNPs_97593 0 0 0 0 2 PKNOX1 chr21:44437018 3'AG 44437018 Downstream 92bp
chr21 44437109 44437109 1 + C T UCEC 44437106 + 44437086 44437126 41 GCAGGGAAACGTAGCCATGGCGACGGTGGCAGGTACGATGA GCAGGGAAACGTAGCCATGGCGATGGTGGCAGGTACGATGA < 41bp 0.777613590354529 0.576072874200793 0.228594 0.29152364 prediction 0.403081432307473 Functional Loss - PKNOX1 ENSG00000160199 CDS Human protein_coding chr21:44437106 chr21:44437109 nonsynonymous SNV 0.448 4 24 hm5C_associated_SNPs_97593 0 0 0 0 2 PKNOX1 chr21:44437117 5'GT 44437117 Upstream 9bp
chr8 36768499 36768499 1 + T C OV 36768498 + 36768478 36768518 41 GCGGCCAACATAGAGCAATGCTCCATGTGTGCTGTCTTGTC GCGGCCAACATAGAGCAATGCCCCATGTGTGCTGTCTTGTC < 41bp 0.70154043473294 0.423912631289425 0.9470904 0.20034233 prediction 0.403080869465879 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36768498 chr8:36768499 nonsynonymous SNV 0.025 2 22 hm5C_associated_SNPs_97594 0 0 0 0 1 KCNU1 chr8:36768448 3'AG 36768448 Downstream 52bp
chr8 36768501 36768501 1 + C T UCEC 36768498 + 36768478 36768518 41 GCGGCCAACATAGAGCAATGCTCCATGTGTGCTGTCTTGTC GCGGCCAACATAGAGCAATGCTCTATGTGTGCTGTCTTGTC < 41bp 0.70154043473294 0.461180728980704 0.9470904 0.9275301 prediction 0.403080869465879 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36768498 chr8:36768501 synonymous SNV . 0 24 hm5C_associated_SNPs_97595 0 0 0 0 1 KCNU1 chr8:36768448 3'AG 36768448 Downstream 54bp
chr11 60689262 60689262 1 + G T UCEC 60689259 + 60689239 60689279 41 CTTCCAGGTGATTACCTCGCCCAGGGCCTGAAGCTCAGCCC CTTCCAGGTGATTACCTCGCCCATGGCCTGAAGCTCAGCCC < 41bp 0.701539574457744 0.292366006145109 0.45549962 0.39677864 prediction 0.403079148915487 Functional Loss - TMEM109 ENSG00000110108 CDS Human protein_coding chr11:60689259 chr11:60689262 nonsynonymous SNV 0.964 0 24 hm5C_associated_SNPs_97596 0 0 1 0 1 TMEM109 chr11:60689246 3'AG 60689246 Downstream 17bp
chrX 48460488 48460488 1 + G T CESC 48460485 + 48460465 48460505 41 AAGCCAAGCGTTTGGTGGTGCATGAGGGGAGCCCTGTGACC AAGCCAAGCGTTTGGTGGTGCATTAGGGGAGCCCTGTGACC < 41bp 0.701538869791763 0.297158948573761 0.4214593 0.41237548 prediction 0.403077739583525 Functional Loss - WDR13 ENSG00000101940 CDS Human protein_coding chrX:48460485 chrX:48460488 stopgain 0.987 1 24 hm5C_associated_SNPs_97597 0 0 1 0 1 WDR13 chrX:48460453 3'AG 48460453 Downstream 36bp
chr11 2417170 2417170 1 + G A UCEC 2417167 + 2417147 2417187 41 CTCAAGAACAATTTGTGTCCCTCGGGCAGCAACATCATCAG CTCAAGAACAATTTGTGTCCCTCAGGCAGCAACATCATCAG < 41bp 0.812529585263755 0.610992692250683 0.04711339 0.031118572 prediction 0.403073786026144 Functional Loss - CD81 ENSG00000110651 CDS Human protein_coding chr11:2417167 chr11:2417170 synonymous SNV . 0 24 hm5C_associated_SNPs_97598 0 0 1 0 2 CD81 chr11:2417099 3'AG 2417099 Downstream 72bp
chr11 2417170 2417170 1 + G A UCEC 2417167 + 2417147 2417187 41 CTCAAGAACAATTTGTGTCCCTCGGGCAGCAACATCATCAG CTCAAGAACAATTTGTGTCCCTCAGGCAGCAACATCATCAG < 41bp 0.812529585263755 0.610992692250683 0.04711339 0.031118572 prediction 0.403073786026144 Functional Loss - CD81 ENSG00000110651 CDS Human protein_coding chr11:2417167 chr11:2417170 synonymous SNV . 0 24 hm5C_associated_SNPs_97598 0 0 1 0 2 CD81 chr11:2417200 5'GT 2417200 Upstream 31bp
chr11 5011057 5011057 1 + G A LUAD 5011054 + 5011034 5011074 41 GATGGGTCCGACACCTCCATCTCGCCAGGAAGATGCAAGTG GATGGGTCCGACACCTCCATCTCACCAGGAAGATGCAAGTG < 41bp 0.701536324234127 0.44619624899284 0.3127936 0.16382372 prediction 0.403072648468255 Functional Loss - MMP26 ENSG00000167346 CDS Human protein_coding chr11:5011054 chr11:5011057 synonymous SNV . 0 24 hm5C_associated_SNPs_97599 0 0 0 0 1 MMP26 chr11:5011098 5'GT 5011098 Upstream 42bp
chr11 5011056 5011056 1 + C T SKCM 5011054 + 5011034 5011074 41 GATGGGTCCGACACCTCCATCTCGCCAGGAAGATGCAAGTG GATGGGTCCGACACCTCCATCTTGCCAGGAAGATGCAAGTG < 41bp 0.701536324234127 0.421727256170109 0.3127936 0.12606192 prediction 0.403072648468255 Functional Loss - MMP26 ENSG00000167346 CDS Human protein_coding chr11:5011054 chr11:5011056 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_97600 0 0 0 0 1 MMP26 chr11:5011098 5'GT 5011098 Upstream 43bp
chr11 7273526 7273526 1 + C T LIHC 7273523 + 7273503 7273543 41 GCTGCCAGGATTTCATTTACCACCTGCGGGACCGTGCCAGA GCTGCCAGGATTTCATTTACCACTTGCGGGACCGTGCCAGA < 41bp 0.713804702273449 0.512269339079444 0.14646986 0.16330495 prediction 0.403070726388009 Functional Loss - SYT9 ENSG00000170743 CDS Human protein_coding chr11:7273523 chr11:7273526 synonymous SNV . 0 24 hm5C_associated_SNPs_97601 0 0 1 0 1 SYT9 chr11:7273562 5'GT 7273562 Upstream 37bp
chr4 39201204 39201204 1 + G A UCEC 39201201 + 39201181 39201221 41 GTTAGTAATCAGGAAGGTGACACGATAAGACAGGTAATACA GTTAGTAATCAGGAAGGTGACACAATAAGACAGGTAATACA < 41bp 0.701535347934444 0.483298470687905 0.4272018 0.3998756 prediction 0.403070695868888 Functional Loss - WDR19 ENSG00000157796 CDS Human protein_coding chr4:39201201 chr4:39201204 synonymous SNV . 0 24 hm5C_associated_SNPs_97602 0 0 1 0 1 WDR19 chr4:39201213 5'GT 39201213 Upstream 10bp
chr5 137762927 137762927 1 + G A BLCA 137762924 + 137762904 137762944 41 CTCTGCCAGAATATACCAAACGAGATGGCAGGCTCAATCTG CTCTGCCAGAATATACCAAACGAAATGGCAGGCTCAATCTG < 41bp 0.701534611685719 0.454929452217272 0.60353774 0.25633454 prediction 0.403069223371439 Functional Loss - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137762924 chr5:137762927 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_97604 0 0 1 0 2 KDM3B chr5:137762878 3'AG 137762878 Downstream 50bp
chr5 137762927 137762927 1 + G A BLCA 137762924 + 137762904 137762944 41 CTCTGCCAGAATATACCAAACGAGATGGCAGGCTCAATCTG CTCTGCCAGAATATACCAAACGAAATGGCAGGCTCAATCTG < 41bp 0.701534611685719 0.454929452217272 0.60353774 0.25633454 prediction 0.403069223371439 Functional Loss - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137762924 chr5:137762927 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_97604 0 0 1 0 2 KDM3B chr5:137763008 5'GT 137763008 Upstream 82bp
chr15 45007714 45007714 1 + A T DLBC 45007712 + 45007692 45007732 41 GTGTCTGGGTTTCATCCATCCGACATTGAAGTTGACTTACT GTGTCTGGGTTTCATCCATCCGTCATTGAAGTTGACTTACT < 41bp 0.714213301061099 0.512678894464644 0.14784756 0.07458913 prediction 0.403068813192909 Functional Loss - B2M ENSG00000166710 CDS Human protein_coding chr15:45007712 chr15:45007714 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_97605 0 0 1 0 2 B2M chr15:45007621 3'AG 45007621 Downstream 94bp
chr15 45007714 45007714 1 + A T DLBC 45007712 + 45007692 45007732 41 GTGTCTGGGTTTCATCCATCCGACATTGAAGTTGACTTACT GTGTCTGGGTTTCATCCATCCGTCATTGAAGTTGACTTACT < 41bp 0.714213301061099 0.512678894464644 0.14784756 0.07458913 prediction 0.403068813192909 Functional Loss - B2M ENSG00000166710 CDS Human protein_coding chr15:45007712 chr15:45007714 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_97605 0 0 1 0 2 B2M chr15:45007757 5'GT 45007757 Upstream 44bp
chr5 33459940 33459940 1 + G A LUAD 33459937 + 33459917 33459957 41 GTGGAGAAGGAGCTGTTTGCCCTGAAACCCATGAACTGCCC GTGGAGAAGGAGCTGTTTGCCCTAAAACCCATGAACTGCCC < 41bp 0.701534139755854 0.46966316707649 0.06687918 0.101590216 prediction 0.403068279511707 Functional Loss - TARS ENSG00000113407 CDS Human protein_coding chr5:33459937 chr5:33459940 synonymous SNV . 0 24 hm5C_associated_SNPs_97606 0 0 1 0 1 TARS chr5:33459966 5'GT 33459966 Upstream 27bp
chr1 45806876 45806876 1 + G T SARC 45806872 + 45806852 45806892 41 GCCATAAAGACAGCTAATTTCGTGGCTGTGGACACGGTGAG GCCATAAAGACAGCTAATTTCGTGTCTGTGGACACGGTGAG < 41bp 0.743796358038127 0.542265929189206 0.8940969 0.7191577 prediction 0.403060857697842 Functional Loss - TOE1 ENSG00000132773 CDS Human protein_coding chr1:45806872 chr1:45806876 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_97610 0 0 0 0 1 TOE1 chr1:45806887 5'GT 45806887 Upstream 12bp
chr3 128987438 128987438 1 + G A COAD 128987435 + 128987415 128987455 41 CTCAAGTCTGTGCCCCTGGCCACGGCGCCCATGGCAGAGCA CTCAAGTCTGTGCCCCTGGCCACAGCGCCCATGGCAGAGCA < 41bp 0.701529671302411 0.449955284871715 0.23620394 0.25847805 prediction 0.403059342604821 Functional Loss - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128987435 chr3:128987438 synonymous SNV . 0 24 hm5C_associated_SNPs_97611 0 0 1 0 1 COPG1 chr3:128987463 5'GT 128987463 Upstream 26bp
chr1 16354399 16354399 1 + G T UCEC 16354396 + 16354376 16354416 41 AGATCTTCTTTTTTGTGGCGCTGGGGTGAGTGGGTGCCTTG AGATCTTCTTTTTTGTGGCGCTGTGGTGAGTGGGTGCCTTG < 41bp 0.701528633455386 0.296928097466401 0.8701631 0.41923958 prediction 0.403057266910771 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16354396 chr1:16354399 nonsynonymous SNV 0.733 5 24 hm5C_associated_SNPs_97612 0 0 0 0 2 CLCNKA chr1:16354316 3'AG 16354316 Downstream 84bp
chr1 16354399 16354399 1 + G T UCEC 16354396 + 16354376 16354416 41 AGATCTTCTTTTTTGTGGCGCTGGGGTGAGTGGGTGCCTTG AGATCTTCTTTTTTGTGGCGCTGTGGTGAGTGGGTGCCTTG < 41bp 0.701528633455386 0.296928097466401 0.8701631 0.41923958 prediction 0.403057266910771 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16354396 chr1:16354399 nonsynonymous SNV 0.733 5 24 hm5C_associated_SNPs_97612 0 0 0 0 2 CLCNKA chr1:16354400 5'GT 16354400 Upstream 2bp
chr3 51426377 51426377 1 + C T SKCM 51426374 + 51426354 51426394 41 GCACAGTGGACCTGAAGAAGCTCCGAGTTAAAGAGCTGAAG GCACAGTGGACCTGAAGAAGCTCTGAGTTAAAGAGCTGAAG < 41bp 0.769555724642754 0.568027907064846 0.07559124 0.063712895 prediction 0.403055635155816 Functional Loss - MANF ENSG00000145050 CDS Human protein_coding chr3:51426374 chr3:51426377 stopgain 0.980 1 24 hm5C_associated_SNPs_97615 0 0 1 0 1 MANF chr3:51426336 3'AG 51426336 Downstream 42bp
chr9 133914404 133914404 1 + G A STAD 133914401 + 133914381 133914421 41 GAATTTCTATCACTGGGACCCGCGGATGCCATGCCAGCCCT GAATTTCTATCACTGGGACCCGCAGATGCCATGCCAGCCCT < 41bp 0.701527608495484 0.446707028736951 0.8836317 0.42875654 prediction 0.403055216990969 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133914401 chr9:133914404 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_97616 0 0 0 0 1 LAMC3 chr9:133914439 5'GT 133914439 Upstream 36bp
chr15 85334030 85334030 1 + A T BRCA 85334026 + 85334006 85334046 41 ACAAGTCCCCCTACTGCTGCCCGGAGTGTGGGGTCCTCTGC ACAAGTCCCCCTACTGCTGCCCGGTGTGTGGGGTCCTCTGC < 41bp 0.701525058303243 0.372500306791712 0.8157686 0.50265855 prediction 0.403050116606487 Functional Loss - ZNF592 ENSG00000166716 CDS Human protein_coding chr15:85334026 chr15:85334030 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_97619 0 0 1 0 3 ZNF592 chr15:85333936 3'AG 85333936 Downstream 95bp
chr15 85334030 85334030 1 + A T BRCA 85334026 + 85334006 85334046 41 ACAAGTCCCCCTACTGCTGCCCGGAGTGTGGGGTCCTCTGC ACAAGTCCCCCTACTGCTGCCCGGTGTGTGGGGTCCTCTGC < 41bp 0.701525058303243 0.372500306791712 0.8157686 0.50265855 prediction 0.403050116606487 Functional Loss - ZNF592 ENSG00000166716 CDS Human protein_coding chr15:85334026 chr15:85334030 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_97619 0 0 1 0 3 ZNF592 chr15:85334103 5'GT 85334103 Upstream 74bp
chr15 85334030 85334030 1 + A T BRCA 85334026 + 85334006 85334046 41 ACAAGTCCCCCTACTGCTGCCCGGAGTGTGGGGTCCTCTGC ACAAGTCCCCCTACTGCTGCCCGGTGTGTGGGGTCCTCTGC < 41bp 0.701525058303243 0.372500306791712 0.8157686 0.50265855 prediction 0.403050116606487 Functional Loss - ZNF592 ENSG00000166716 CDS Human protein_coding chr15:85334026 chr15:85334030 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_97619 0 0 1 0 3 ZNF592 chr15:85334114 5'GT 85334114 Upstream 85bp
chr10 76158301 76158301 1 + G A LUAD 76158298 + 76158278 76158318 41 CATCTTGATCTGGAGAAAAACTGGATGTTGGTAGAAAAAGC CATCTTGATCTGGAGAAAAACTGAATGTTGGTAGAAAAAGC < 41bp 0.716591430930329 0.515066792547922 0.5764816 0.2773826 prediction 0.403049276764813 Functional Loss - ADK ENSG00000156110 CDS Human protein_coding chr10:76158298 chr10:76158301 stopgain 0.955 1 24 hm5C_associated_SNPs_97620 0 0 1 0 2 ADK chr10:76158229 3'AG 76158229 Downstream 73bp
chr10 76158301 76158301 1 + G A LUAD 76158298 + 76158278 76158318 41 CATCTTGATCTGGAGAAAAACTGGATGTTGGTAGAAAAAGC CATCTTGATCTGGAGAAAAACTGAATGTTGGTAGAAAAAGC < 41bp 0.716591430930329 0.515066792547922 0.5764816 0.2773826 prediction 0.403049276764813 Functional Loss - ADK ENSG00000156110 CDS Human protein_coding chr10:76158298 chr10:76158301 stopgain 0.955 1 24 hm5C_associated_SNPs_97620 0 0 1 0 2 ADK chr10:76158337 5'GT 76158337 Upstream 37bp
chr19 36606492 36606492 1 + G T COAD 36606488 + 36606468 36606508 41 GGTGACGGGGGTGTCGGCACCCACGGTGACCGTTTTCATCA GGTGACGGGGGTGTCGGCACCCACTGTGACCGTTTTCATCA < 41bp 0.741970166968537 0.540447294351194 0.088790864 0.016538471 prediction 0.403045745234687 Functional Loss - TBCB ENSG00000105254 CDS Human protein_coding chr19:36606488 chr19:36606492 synonymous SNV . 0 25 hm5C_associated_SNPs_97622 0 0 1 0 1 TBCB chr19:36606576 5'GT 36606576 Upstream 85bp
chr1 151502430 151502430 1 + C T rs147054552 151502427 + 151502407 151502447 41 AGGCAACAGTGCTGGGGCAGCGGCGGGCCGCAGTGGAGACG AGGCAACAGTGCTGGGGCAGCGGTGGGCCGCAGTGGAGACG < 41bp 0.747331783255071 0.545811076337282 0.75597787 0.80469424 prediction 0.403041413835578 Functional Loss - CGN ENSG00000143375 CDS Human protein_coding chr1:151502427 chr1:151502430 nonsynonymous SNV 0.056 2 24 hm5C_associated_SNPs_97625 0 0 0 0 1 CGN chr1:151502385 3'AG 151502385 Downstream 46bp
chr12 81610752 81610752 1 + G A SKCM 81610749 + 81610729 81610769 41 AACACCTCCACCAGGGCAAGCAGGAAAAAGCGTCCCAGGAT AACACCTCCACCAGGGCAAGCAGAAAAAAGCGTCCCAGGAT < 41bp 0.815459027873425 0.613941930509911 0.8956919 0.45443946 prediction 0.403034194727028 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81610749 chr12:81610752 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_97628 0 0 1 0 2 ACSS3 chr12:81610680 3'AG 81610680 Downstream 73bp
chr12 81610752 81610752 1 + G A SKCM 81610749 + 81610729 81610769 41 AACACCTCCACCAGGGCAAGCAGGAAAAAGCGTCCCAGGAT AACACCTCCACCAGGGCAAGCAGAAAAAAGCGTCCCAGGAT < 41bp 0.815459027873425 0.613941930509911 0.8956919 0.45443946 prediction 0.403034194727028 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81610749 chr12:81610752 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_97628 0 0 1 0 2 ACSS3 chr12:81610775 5'GT 81610775 Upstream 24bp
chr7 16705105 16705105 1 + C T BLCA 16705102 + 16705082 16705122 41 AGAAGCCAGTGCTAACAGGCCAGCGGTTCAAAACTCGGAAA AGAAGCCAGTGCTAACAGGCCAGTGGTTCAAAACTCGGAAA < 41bp 0.756086846587055 0.554571089785315 0.39297074 0.24666369 prediction 0.403031513603479 Functional Loss - BZW2 ENSG00000136261 CDS Human protein_coding chr7:16705102 chr7:16705105 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_97630 0 0 1 0 2 BZW2 chr7:16705062 3'AG 16705062 Downstream 44bp
chr7 16705105 16705105 1 + C T BLCA 16705102 + 16705082 16705122 41 AGAAGCCAGTGCTAACAGGCCAGCGGTTCAAAACTCGGAAA AGAAGCCAGTGCTAACAGGCCAGTGGTTCAAAACTCGGAAA < 41bp 0.756086846587055 0.554571089785315 0.39297074 0.24666369 prediction 0.403031513603479 Functional Loss - BZW2 ENSG00000136261 CDS Human protein_coding chr7:16705102 chr7:16705105 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_97630 0 0 1 0 2 BZW2 chr7:16705126 5'GT 16705126 Upstream 22bp
chr22 25715756 25715756 1 + G A rs72500244 25715753 + 25715733 25715773 41 GGTCAGCCCAAGGCCACCCCCTCGGTCACTCTGTTCCTGCC GGTCAGCCCAAGGCCACCCCCTCAGTCACTCTGTTCCTGCC < 41bp 0.796331758564554 0.594818333595675 0.20058626 0.093052655 prediction 0.403026849937758 Functional Loss - IGLL3P ENSG00000206066 ncRNA_exonic Human unprocessed_pseudogene chr22:25715753 chr22:25715756 . . 0 24 hm5C_associated_SNPs_97631 0 0 0 0 1 IGLL3P chr22:25715734 3'AG 25715734 Downstream 23bp
chr17 80684787 80684787 1 + G T UCEC 80684783 + 80684763 80684803 41 GGGGACCTCTGGGGTGGAAACGTAGCAGAGGATTCCTCTGG GGGGACCTCTGGGGTGGAAACGTATCAGAGGATTCCTCTGG < 41bp 0.72915621653959 0.527643699570346 0.91416776 0.3299433 prediction 0.403025033938488 Functional Loss - FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80684783 chr17:80684787 nonsynonymous SNV 0.142 1 25 hm5C_associated_SNPs_97632 0 0 1 0 1 FN3KRP chr17:80684709 3'AG 80684709 Downstream 79bp
chr3 111298074 111298074 1 + G A SKCM 111298071 + 111298051 111298091 41 TTGAGGAGCTCCACCACAGTCAAGGTTTTTGGTAAGGGCTT TTGAGGAGCTCCACCACAGTCAAAGTTTTTGGTAAGGGCTT < 41bp 0.701512101352679 0.451521102661251 0.8431591 0.36415905 prediction 0.403024202705359 Functional Loss - CD96 ENSG00000153283 CDS Human protein_coding chr3:111298071 chr3:111298074 synonymous SNV . 0 24 hm5C_associated_SNPs_97633 0 0 0 0 1 CD96 chr3:111298081 5'GT 111298081 Upstream 8bp
chr13 43148565 43148565 1 + T C rs2296533 43148564 + 43148544 43148584 41 GCCTGCGCCGCACCAGCCCCCTGCCGCCTCCCGCTCCATGT GCCTGCGCCGCACCAGCCCCCCGCCGCCTCCCGCTCCATGT < 41bp 0.727041507329005 0.525529456914341 0.04097709 0.037292123 prediction 0.403024100829328 Functional Loss - TNFSF11 ENSG00000120659 CDS Human protein_coding chr13:43148564 chr13:43148565 synonymous SNV . 0 22 hm5C_associated_SNPs_97634 2 0 0 0 1 TNFSF11 chr13:43148658 5'GT 43148658 Upstream 94bp
chr21 14983026 14983026 1 + C T SARC 14983023 + 14983003 14983043 41 GTCCCCAGAAAGGATCTCATCGTCATGCTCAGGGACACTGA GTCCCCAGAAAGGATCTCATCGTTATGCTCAGGGACACTGA < 41bp 0.744687462366584 0.543176546114209 0.1869668 0.046051532 prediction 0.403021832504751 Functional Loss - POTED ENSG00000166351 CDS Human protein_coding chr21:14983023 chr21:14983026 synonymous SNV . 0 24 hm5C_associated_SNPs_97635 0 0 0 0 1 POTED chr21:14983070 5'GT 14983070 Upstream 45bp
chr17 20135652 20135652 1 + G A BRCA 20135649 + 20135629 20135669 41 GGAGGAGGAGGAGAAGAATGCCCGGTTGCAGAAGGAGCTGG GGAGGAGGAGGAGAAGAATGCCCAGTTGCAGAAGGAGCTGG < 41bp 0.701506807044339 0.459478947146037 0.26202282 0.1200386 prediction 0.403013614088678 Functional Loss - SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135649 chr17:20135652 nonsynonymous SNV 0.941 3 24 hm5C_associated_SNPs_97636 0 0 1 0 2 SPECC1 chr17:20135718 5'GT 20135718 Upstream 67bp
chr17 20135652 20135652 1 + G A BRCA 20135649 + 20135629 20135669 41 GGAGGAGGAGGAGAAGAATGCCCGGTTGCAGAAGGAGCTGG GGAGGAGGAGGAGAAGAATGCCCAGTTGCAGAAGGAGCTGG < 41bp 0.701506807044339 0.459478947146037 0.26202282 0.1200386 prediction 0.403013614088678 Functional Loss - SPECC1 ENSG00000128487 CDS Human lincRNA chr17:20135649 chr17:20135652 nonsynonymous SNV 0.941 3 24 hm5C_associated_SNPs_97636 0 0 1 0 2 SPECC1 chr17:20135727 5'GT 20135727 Upstream 76bp
chr14 65054875 65054875 1 + C T LUSC 65054872 + 65054852 65054892 41 AAAAGCTATCAACATGCGTTCTCCAGTCATGTCTACTCTGC AAAAGCTATCAACATGCGTTCTCTAGTCATGTCTACTCTGC < 41bp 0.788691220736492 0.587190860698397 0.9452888 0.9206134 prediction 0.40300072007619 Functional Loss - PPP1R36 ENSG00000165807 CDS Human protein_coding chr14:65054872 chr14:65054875 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_97642 0 0 0 0 1 PPP1R36 chr14:65054822 3'AG 65054822 Downstream 54bp
chr9 66553550 66553550 1 + C T UCEC 66553548 + 66553528 66553568 41 GTGCGCGGAGATGGCTGCGACGCGTGCGCAGGTAAAGTCCA GTGCGCGGAGATGGCTGCGACGTGTGCGCAGGTAAAGTCCA < 41bp 0.739552276867649 0.538056762601922 0.1903047 0.19771981 prediction 0.402991028531454 Functional Loss - LOC403323;LOC728673 ENSG00000170161;ENSG00000234665 ncRNA_exonic Human other chr9:66553548 chr9:66553550 . . 0 23 hm5C_associated_SNPs_97648 0 0 0 0 1 LOC403323;LOC728673 chr9:66553558 5'GT 66553558 Upstream 9bp
chr11 20385868 20385868 1 + G T UCEC 20385864 + 20385844 20385884 41 GTCTTTATTTTGGGCGCCAGCGGAGAAACCGGCAGAGTGCT GTCTTTATTTTGGGCGCCAGCGGATAAACCGGCAGAGTGCT < 41bp 0.758478980134241 0.556989072620479 0.8859814 0.84382576 prediction 0.402979815027524 Functional Loss - HTATIP2 ENSG00000109854 CDS Human protein_coding chr11:20385864 chr11:20385868 stopgain 0.914 1 25 hm5C_associated_SNPs_97652 0 0 1 0 1 HTATIP2 chr11:20385783 3'AG 20385783 Downstream 86bp
chr11 61205221 61205221 1 + C T SKCM 61205218 + 61205198 61205238 41 CATGATTGAAATCCCTTTGCCTCCATGGCAGGAGAGAACTG CATGATTGAAATCCCTTTGCCTCTATGGCAGGAGAGAACTG < 41bp 0.824307039740726 0.622817915142726 0.9561454 0.91122454 prediction 0.402978249196 Functional Loss - SDHAF2 ENSG00000167985;ENSG00000256591 CDS Human other chr11:61205218 chr11:61205221 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_97653 0 0 1 0 1 SDHAF2 chr11:61205320 5'GT 61205320 Upstream 100bp
chr10 103920264 103920264 1 + G T CESC 103920261 + 103920241 103920281 41 TCTAAGCCAGCTGGTACCACCAAGAATTCTTCAAATAAGCC TCTAAGCCAGCTGGTACCACCAATAATTCTTCAAATAAGCC < 41bp 0.70148537779518 0.307352396487461 0.14616853 0.086930424 prediction 0.40297075559036 Functional Loss - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103920261 chr10:103920264 nonsynonymous SNV 0.111 3 24 hm5C_associated_SNPs_97656 0 0 1 0 1 NOLC1 chr10:103920209 3'AG 103920209 Downstream 56bp
chr7 102110276 102110276 1 + C T UCEC 102110273 + 102110253 102110293 41 GACGCCCGCCTGCTGGCCGGCTGCGAGGGCGGCTGCTGCTG GACGCCCGCCTGCTGGCCGGCTGTGAGGGCGGCTGCTGCTG < 41bp 0.701484887760146 0.495922535248314 0.37245715 0.29505774 prediction 0.402969775520291 Functional Loss - LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102110273 chr7:102110276 synonymous SNV . 0 24 hm5C_associated_SNPs_97657 0 0 1 0 2 LRWD1 chr7:102110189 3'AG 102110189 Downstream 88bp
chr7 102110276 102110276 1 + C T UCEC 102110273 + 102110253 102110293 41 GACGCCCGCCTGCTGGCCGGCTGCGAGGGCGGCTGCTGCTG GACGCCCGCCTGCTGGCCGGCTGTGAGGGCGGCTGCTGCTG < 41bp 0.701484887760146 0.495922535248314 0.37245715 0.29505774 prediction 0.402969775520291 Functional Loss - LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102110273 chr7:102110276 synonymous SNV . 0 24 hm5C_associated_SNPs_97657 0 0 1 0 2 LRWD1 chr7:102110329 5'GT 102110329 Upstream 54bp
chr17 4858439 4858439 1 + C T CESC 4858436 + 4858416 4858456 41 CCATGCAGGAGTTCATGATTCTGCCTGTGGGAGCCAGCTCC CCATGCAGGAGTTCATGATTCTGTCTGTGGGAGCCAGCTCC < 41bp 0.701483471463092 0.479526702040869 0.15136737 0.20090511 prediction 0.402966942926183 Functional Loss - ENO3 ENSG00000108515 CDS Human protein_coding chr17:4858436 chr17:4858439 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_97658 0 0 1 0 1 ENO3 chr17:4858370 3'AG 4858370 Downstream 70bp
chr7 97800947 97800947 1 + C T LUSC 97800945 + 97800925 97800965 41 AGGATGGCGTGCGAGGTCGCCGCGGGGCTGGCCGCCATGCA AGGATGGCGTGCGAGGTCGCCGTGGGGCTGGCCGCCATGCA < 41bp 0.858363757679716 0.656885972843558 0.91577446 0.888438 prediction 0.402955569672316 Functional Loss - LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97800945 chr7:97800947 nonsynonymous SNV 0.047 5 23 hm5C_associated_SNPs_97663 0 0 1 0 1 LMTK2 chr7:97800986 5'GT 97800986 Upstream 40bp
chr22 46709881 46709881 1 + G A rs6008622 46709878 + 46709858 46709898 41 GCCTGTTTGGAGCGGGGCATCCAGTGCGTGCACATCCCCAG GCCTGTTTGGAGCGGGGCATCCAATGCGTGCACATCCCCAG < 41bp 0.701477327148761 0.440987463468282 0.14000577 0.076194406 prediction 0.402954654297522 Functional Loss - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46709878 chr22:46709881 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_97665 0 0 1 0 2 GTSE1 chr22:46709787 3'AG 46709787 Downstream 95bp
chr22 46709881 46709881 1 + G A rs6008622 46709878 + 46709858 46709898 41 GCCTGTTTGGAGCGGGGCATCCAGTGCGTGCACATCCCCAG GCCTGTTTGGAGCGGGGCATCCAATGCGTGCACATCCCCAG < 41bp 0.701477327148761 0.440987463468282 0.14000577 0.076194406 prediction 0.402954654297522 Functional Loss - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46709878 chr22:46709881 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_97665 0 0 1 0 2 GTSE1 chr22:46709910 5'GT 46709910 Upstream 30bp
chr12 250351 250351 1 - G A LUSC 250354 - 250334 250374 41 CTGGAGGAGGAAATGGGCCACACCGATGGGGGTGTCCGGGA CTGGAGGAGGAAATGGGCCACACTGATGGGGGTGTCCGGGA < 41bp 0.768026892340846 0.566549947806443 0.0776647 0.13608515 prediction 0.402953889068806 Functional Loss - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:250354 chr12:250351 nonsynonymous SNV 0.890 2 24 hm5C_associated_SNPs_97666 0 0 0 0 1 IQSEC3 chr12:250410 3'AG 250410 Downstream 60bp
chr21 44592189 44592189 1 + C T COAD 44592187 + 44592167 44592207 41 CCCACCCTCTCCAGGACGACCACGGCTACATTTCCCGTGAG CCCACCCTCTCCAGGACGACCATGGCTACATTTCCCGTGAG < 41bp 0.810431759160783 0.608955995662201 0.9101783 0.87129104 prediction 0.402951526997165 Functional Loss - CRYAA;LOC102724652 ENSG00000160202 CDS Human protein_coding chr21:44592187 chr21:44592189 synonymous SNV . 0 23 hm5C_associated_SNPs_97667 0 0 0 0 1 CRYAA;LOC102724652 chr21:44592181 3'AG 44592181 Downstream 9bp
chrX 153049583 153049583 1 + C T rs55688748 153049580 + 153049560 153049600 41 GGCTCACAGACCTCAGGCTTCTCCGGCTCCCTCTTCTCTCC GGCTCACAGACCTCAGGCTTCTCTGGCTCCCTCTTCTCTCC < 41bp 0.748100369475605 0.54662476829107 0.15348643 0.066118985 prediction 0.40295120236907 Functional Loss - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153049580 chrX:153049583 synonymous SNV . 0 24 hm5C_associated_SNPs_97668 0 0 0 0 2 SRPK3 chrX:153049576 3'AG 153049576 Downstream 8bp
chrX 153049583 153049583 1 + C T rs55688748 153049580 + 153049560 153049600 41 GGCTCACAGACCTCAGGCTTCTCCGGCTCCCTCTTCTCTCC GGCTCACAGACCTCAGGCTTCTCTGGCTCCCTCTTCTCTCC < 41bp 0.748100369475605 0.54662476829107 0.15348643 0.066118985 prediction 0.40295120236907 Functional Loss - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153049580 chrX:153049583 synonymous SNV . 0 24 hm5C_associated_SNPs_97668 0 0 0 0 2 SRPK3 chrX:153049668 5'GT 153049668 Upstream 86bp
chr1 160722938 160722938 1 + A T LUAD 160722936 + 160722916 160722956 41 GCTCACGATGCCAGACACACCAAGGCTATTTGCCTATGAGA GCTCACGATGCCAGACACACCATGGCTATTTGCCTATGAGA < 41bp 0.722192613816506 0.520718987185319 0.84462553 0.06154883 prediction 0.402947253262376 Functional Loss - SLAMF7 ENSG00000026751 CDS Human protein_coding chr1:160722936 chr1:160722938 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_97669 0 0 0 0 1 SLAMF7 chr1:160722896 3'AG 160722896 Downstream 43bp
chr1 3322139 3322139 1 + C T rs61745281 3322136 + 3322116 3322156 41 CGGGCCCACGCCTGCCCCGACTGCGGGAAGACCTTCGCCAC CGGGCCCACGCCTGCCCCGACTGTGGGAAGACCTTCGCCAC < 41bp 0.711731153009526 0.510260197607071 0.377326 0.32973242 prediction 0.402941910804909 Functional Loss - PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3322136 chr1:3322139 synonymous SNV . 0 24 hm5C_associated_SNPs_97674 2 0 0 0 2 PRDM16 chr1:3322059 3'AG 3322059 Downstream 81bp
chr1 3322139 3322139 1 + C T rs61745281 3322136 + 3322116 3322156 41 CGGGCCCACGCCTGCCCCGACTGCGGGAAGACCTTCGCCAC CGGGCCCACGCCTGCCCCGACTGTGGGAAGACCTTCGCCAC < 41bp 0.711731153009526 0.510260197607071 0.377326 0.32973242 prediction 0.402941910804909 Functional Loss - PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3322136 chr1:3322139 synonymous SNV . 0 24 hm5C_associated_SNPs_97674 2 0 0 0 2 PRDM16 chr1:3322212 5'GT 3322212 Upstream 74bp
chrX 47074261 47074261 1 + A T LUSC 47074257 + 47074237 47074277 41 GCCACGTGCGGGCGCTGGTGCTTGAGCTGTGCTGTAACGAC GCCACGTGCGGGCGCTGGTGCTTGTGCTGTGCTGTAACGAC < 41bp 0.701469911439182 0.364734681519264 0.21020842 0.21235159 prediction 0.402939822878364 Functional Loss - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47074257 chrX:47074261 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_97676 0 0 1 0 1 UBA1 chrX:47074193 3'AG 47074193 Downstream 69bp
chr1 192128419 192128419 1 + C T KIRP 192128416 + 192128396 192128436 41 GAGTTTCATGAAGACACCCGCTCCAGTAGATCTGGGCACTT GAGTTTCATGAAGACACCCGCTCTAGTAGATCTGGGCACTT < 41bp 0.770128281507612 0.568659608239742 0.7304804 0.43621922 prediction 0.40293734653574 Functional Loss - RGS18 ENSG00000150681 CDS Human protein_coding chr1:192128416 chr1:192128419 synonymous SNV . 0 24 hm5C_associated_SNPs_97677 0 0 0 0 2 RGS18 chr1:192128350 3'AG 192128350 Downstream 70bp
chr1 192128419 192128419 1 + C T KIRP 192128416 + 192128396 192128436 41 GAGTTTCATGAAGACACCCGCTCCAGTAGATCTGGGCACTT GAGTTTCATGAAGACACCCGCTCTAGTAGATCTGGGCACTT < 41bp 0.770128281507612 0.568659608239742 0.7304804 0.43621922 prediction 0.40293734653574 Functional Loss - RGS18 ENSG00000150681 CDS Human protein_coding chr1:192128416 chr1:192128419 synonymous SNV . 0 24 hm5C_associated_SNPs_97677 0 0 0 0 2 RGS18 chr1:192128451 5'GT 192128451 Upstream 33bp
chr19 14024359 14024359 1 + C T COAD 14024357 + 14024337 14024377 41 ACCCAGCCGGCCCCTAGAATCGCGTCAGCCCCAGAGCCCAG ACCCAGCCGGCCCCTAGAATCGTGTCAGCCCCAGAGCCCAG < 41bp 0.819741409411766 0.618272923243332 0.73311216 0.61366355 prediction 0.402936972336867 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14024357 chr19:14024359 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_97678 0 0 0 0 1 CC2D1A chr19:14024451 5'GT 14024451 Upstream 93bp
chr8 19218809 19218809 1 + G A UCEC 19218806 + 19218786 19218826 41 TGTAAGAGCTGGAAAGAAGACTCGGAATGGCAGGCATCTCG TGTAAGAGCTGGAAAGAAGACTCAGAATGGCAGGCATCTCG < 41bp 0.817237289965645 0.615769144094963 0.12104607 0.06046477 prediction 0.402936291741364 Functional Loss - SH2D4A ENSG00000104611 CDS Human protein_coding chr8:19218806 chr8:19218809 synonymous SNV . 0 24 hm5C_associated_SNPs_97679 0 0 1 0 2 SH2D4A chr8:19218714 3'AG 19218714 Downstream 96bp
chr8 19218809 19218809 1 + G A UCEC 19218806 + 19218786 19218826 41 TGTAAGAGCTGGAAAGAAGACTCGGAATGGCAGGCATCTCG TGTAAGAGCTGGAAAGAAGACTCAGAATGGCAGGCATCTCG < 41bp 0.817237289965645 0.615769144094963 0.12104607 0.06046477 prediction 0.402936291741364 Functional Loss - SH2D4A ENSG00000104611 CDS Human protein_coding chr8:19218806 chr8:19218809 synonymous SNV . 0 24 hm5C_associated_SNPs_97679 0 0 1 0 2 SH2D4A chr8:19218825 5'GT 19218825 Upstream 17bp
chr3 10123070 10123070 1 + G A OV 10123067 + 10123047 10123087 41 TCACGGTGTAGTTGATGGACCAGGAGTGAAAGTTCAGGAGT TCACGGTGTAGTTGATGGACCAGAAGTGAAAGTTCAGGAGT < 41bp 0.701467626847474 0.457795043504162 0.43966073 0.28221157 prediction 0.402935253694949 Functional Loss - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10123067 chr3:10123070 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_97680 0 0 1 0 1 FANCD2 chr3:10123148 5'GT 10123148 Upstream 79bp
chr22 18644563 18644563 1 + G A UCEC 18644560 + 18644540 18644580 41 CTGTTCTTGTGTGGCAGGATCACGGTGCCCAGGGGAGCTGA CTGTTCTTGTGTGGCAGGATCACAGTGCCCAGGGGAGCTGA < 41bp 0.844744414439492 0.64328023637794 0.6881478 0.28553107 prediction 0.402928356123105 Functional Loss - USP18 ENSG00000184979 CDS Human protein_coding chr22:18644560 chr22:18644563 synonymous SNV . 0 24 hm5C_associated_SNPs_97683 0 0 0 0 1 USP18 chr22:18644557 3'AG 18644557 Downstream 7bp
chr8 26509811 26509811 1 + C T UCEC 26509809 + 26509789 26509829 41 TCTTTGAAGGCATGGAGTGCCGCGGCTCCCCACTGGTGGTC TCTTTGAAGGCATGGAGTGCCGTGGCTCCCCACTGGTGGTC < 41bp 0.864538181167224 0.663082350824216 0.2677587 0.15480924 prediction 0.402911660686017 Functional Loss - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26509809 chr8:26509811 synonymous SNV . 0 23 hm5C_associated_SNPs_97687 0 0 1 0 1 DPYSL2 chr8:26509773 3'AG 26509773 Downstream 39bp
chr19 33639788 33639788 1 + G T GBM 33639785 + 33639765 33639805 41 GGAATCTGCATAATGGACGCCGAGAACATCACCACCGTTTC GGAATCTGCATAATGGACGCCGATAACATCACCACCGTTTC < 41bp 0.701453410332369 0.29968962775081 0.05030933 0.020785391 prediction 0.402906820664737 Functional Loss - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33639785 chr19:33639788 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_97690 0 0 0 0 1 WDR88 chr19:33639816 5'GT 33639816 Upstream 29bp
chr5 36679929 36679929 1 + A T LUAD 36679925 + 36679905 36679945 41 GGGTTTTTATTGGAGGGTTGCTGCAAGCACTCATCACCGCT GGGTTTTTATTGGAGGGTTGCTGCTAGCACTCATCACCGCT < 41bp 0.701453214912326 0.354659464193355 0.39762118 0.14933875 prediction 0.402906429824653 Functional Loss - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36679925 chr5:36679929 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_97691 0 0 0 0 1 SLC1A3 chr5:36679962 5'GT 36679962 Upstream 34bp
chr1 93575798 93575798 1 + G A LGG 93575795 + 93575775 93575815 41 TTCTCTAAACAGAGACTCTACAGGGGCAGGTAATTCACTGG TTCTCTAAACAGAGACTCTACAGAGGCAGGTAATTCACTGG < 41bp 0.766148274063052 0.564695072369883 0.9084445 0.83267146 prediction 0.402906403386338 Functional Loss - MTF2 ENSG00000143033 CDS Human protein_coding chr1:93575795 chr1:93575798 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_97692 0 0 1 0 1 MTF2 chr1:93575803 5'GT 93575803 Upstream 6bp
chr1 220773197 220773197 1 + C T LUSC 220773195 + 220773175 220773215 41 CTCTATTTAGTCATGGAATACGCGAGTGGGGGTAAGAATGA CTCTATTTAGTCATGGAATACGTGAGTGGGGGTAAGAATGA < 41bp 0.701451700791496 0.410356388339795 0.17185414 0.08253014 prediction 0.402903401582993 Functional Loss - MARK1 ENSG00000116141 CDS Human protein_coding chr1:220773195 chr1:220773197 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_97693 0 0 1 0 2 MARK1 chr1:220773140 3'AG 220773140 Downstream 58bp
chr1 220773197 220773197 1 + C T LUSC 220773195 + 220773175 220773215 41 CTCTATTTAGTCATGGAATACGCGAGTGGGGGTAAGAATGA CTCTATTTAGTCATGGAATACGTGAGTGGGGGTAAGAATGA < 41bp 0.701451700791496 0.410356388339795 0.17185414 0.08253014 prediction 0.402903401582993 Functional Loss - MARK1 ENSG00000116141 CDS Human protein_coding chr1:220773195 chr1:220773197 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_97693 0 0 1 0 2 MARK1 chr1:220773205 5'GT 220773205 Upstream 9bp
chr1 15766864 15766864 1 + C T STAD 15766862 + 15766842 15766882 41 AGTGGTGGGAGGAGAGGATGCCCGGCCCCACAGCTGGCCCT AGTGGTGGGAGGAGAGGATGCCTGGCCCCACAGCTGGCCCT < 41bp 0.826153956299001 0.624704757124841 0.89026594 0.80482984 prediction 0.402898398348321 Functional Loss - CTRC ENSG00000162438 CDS Human protein_coding chr1:15766862 chr1:15766864 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_97695 0 0 0 0 2 CTRC chr1:15766796 3'AG 15766796 Downstream 69bp
chr1 15766864 15766864 1 + C T STAD 15766862 + 15766842 15766882 41 AGTGGTGGGAGGAGAGGATGCCCGGCCCCACAGCTGGCCCT AGTGGTGGGAGGAGAGGATGCCTGGCCCCACAGCTGGCCCT < 41bp 0.826153956299001 0.624704757124841 0.89026594 0.80482984 prediction 0.402898398348321 Functional Loss - CTRC ENSG00000162438 CDS Human protein_coding chr1:15766862 chr1:15766864 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_97695 0 0 0 0 2 CTRC chr1:15766887 5'GT 15766887 Upstream 24bp
chr1 1848446 1848446 1 + C T SARC 1848443 + 1848423 1848463 41 ATGAACGCAGGGGAGCCCCTCAACGAGGTGGAGGCGGAGCA ATGAACGCAGGGGAGCCCCTCAATGAGGTGGAGGCGGAGCA < 41bp 0.733420286205765 0.531974054131193 0.74293226 0.6118418 prediction 0.402892464149143 Functional Loss - CALML6 ENSG00000169885 CDS Human protein_coding chr1:1848443 chr1:1848446 synonymous SNV . 0 24 hm5C_associated_SNPs_97697 0 0 0 0 1 CALML6 chr1:1848413 3'AG 1848413 Downstream 34bp
chr1 37946015 37946015 1 + G A CESC 37946012 + 37945992 37946032 41 GGAGGAAGGAGCAGCCTCGGCCCGACGTGCCCATCACAGGT GGAGGAAGGAGCAGCCTCGGCCCAACGTGCCCATCACAGGT < 41bp 0.701445273349338 0.445399290638759 0.1635027 0.11746928 prediction 0.402890546698675 Functional Loss - ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37946012 chr1:37946015 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_97700 0 0 1 0 1 ZC3H12A chr1:37946030 5'GT 37946030 Upstream 16bp
chr7 129945666 129945666 1 + G A SKCM 129945663 + 129945643 129945683 41 CTCCCTTCTGCAGTTCAGCACTGGGAAAGGCGTGAGGCGGC CTCCCTTCTGCAGTTCAGCACTGAGAAAGGCGTGAGGCGGC < 41bp 0.836138706662768 0.634694147698747 0.49938563 0.24395207 prediction 0.402889117928042 Functional Loss - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129945663 chr7:129945666 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_97701 0 0 0 0 2 CPA4 chr7:129945656 3'AG 129945656 Downstream 11bp
chr7 129945666 129945666 1 + G A SKCM 129945663 + 129945643 129945683 41 CTCCCTTCTGCAGTTCAGCACTGGGAAAGGCGTGAGGCGGC CTCCCTTCTGCAGTTCAGCACTGAGAAAGGCGTGAGGCGGC < 41bp 0.836138706662768 0.634694147698747 0.49938563 0.24395207 prediction 0.402889117928042 Functional Loss - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129945663 chr7:129945666 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_97701 0 0 0 0 2 CPA4 chr7:129945760 5'GT 129945760 Upstream 95bp
chr9 91041471 91041471 1 + G T LUAD 91041469 + 91041449 91041489 41 AGATGAATGAAGACCCCATTCGGAAAGACACCTGGCCAGCG AGATGAATGAAGACCCCATTCGTAAAGACACCTGGCCAGCG < 41bp 0.916947745884833 0.715503395335703 0.86956406 0.2050808 prediction 0.40288870109826 Functional Loss - SPIN1 ENSG00000106723 CDS Human protein_coding chr9:91041469 chr9:91041471 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_97702 0 0 1 0 1 SPIN1 chr9:91041506 5'GT 91041506 Upstream 36bp
chr16 2550358 2550358 1 + C T rs199865687 2550355 + 2550335 2550375 41 CCCTTGATGGCTGCCGAGCCCACCGCCCCACTCAGCCACTC CCCTTGATGGCTGCCGAGCCCACTGCCCCACTCAGCCACTC < 41bp 0.701443632371828 0.489381973419843 0.26160306 0.16426507 prediction 0.402887264743657 Functional Loss - TBC1D24 ENSG00000162065 CDS Human protein_coding chr16:2550355 chr16:2550358 synonymous SNV . 0 24 hm5C_associated_SNPs_97703 3 0 0 0 1 TBC1D24 chr16:2550269 3'AG 2550269 Downstream 90bp
chr6 36922542 36922542 1 + C T CESC 36922540 + 36922520 36922560 41 AGAGACGGCTGGCCACCATGCACGGCTCCTGCAGTTTCCTG AGAGACGGCTGGCCACCATGCATGGCTCCTGCAGTTTCCTG < 41bp 0.813550891533182 0.612107711800548 0.24427381 0.2041201 prediction 0.402886359465269 Functional Loss - PI16 ENSG00000164530 CDS Human protein_coding chr6:36922540 chr6:36922542 synonymous SNV . 0 23 hm5C_associated_SNPs_97704 0 0 0 0 1 PI16 chr6:36922456 3'AG 36922456 Downstream 87bp
chr6 167721398 167721398 1 + G T LUAD 167721394 + 167721374 167721414 41 GCCGTCTGGCAGACACAAAACAATGGTGAGTCCCCAGCCCA GCCGTCTGGCAGACACAAAACAATTGTGAGTCCCCAGCCCA < 41bp 0.728127898807306 0.526688026575802 0.73899674 0.42363802 prediction 0.402879744463007 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167721394 chr6:167721398 nonsynonymous SNV 0.251 1 25 hm5C_associated_SNPs_97708 0 0 0 0 1 UNC93A chr6:167721398 5'GT 167721398 Upstream 1bp
chr19 4433484 4433484 1 + C T UCEC 4433481 + 4433461 4433501 41 CATCTCGCTGAAGAGGAAGTCAGCGGGCAGCATGTGCATCA CATCTCGCTGAAGAGGAAGTCAGTGGGCAGCATGTGCATCA < 41bp 0.736618236068069 0.535180571070588 0.7140945 0.2701341 prediction 0.402875329994961 Functional Loss - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4433481 chr19:4433484 nonsynonymous SNV 0.881 2 24 hm5C_associated_SNPs_97709 0 0 1 0 1 CHAF1A chr19:4433536 5'GT 4433536 Upstream 53bp
chr10 92631778 92631778 1 + G A rs11544145 92631775 + 92631755 92631795 41 TGCAGATTTGGACCTGCGAGCGGGTTCTGACCTGAAGGCTC TGCAGATTTGGACCTGCGAGCGGATTCTGACCTGAAGGCTC < 41bp 0.819311675262319 0.617875480343551 0.88012964 0.7257637 prediction 0.402872389837536 Functional Loss - RPP30 ENSG00000148688 CDS Human protein_coding chr10:92631775 chr10:92631778 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_97711 0 0 1 0 1 RPP30 chr10:92631825 5'GT 92631825 Upstream 48bp
chr15 41230270 41230270 1 + G A rs200027644 41230267 + 41230247 41230287 41 TGGACATCCCTGCTCAGCCCCGCGGCTGGACCTTCCTTCTG TGGACATCCCTGCTCAGCCCCGCAGCTGGACCTTCCTTCTG < 41bp 0.824698242741128 0.623263872154647 0.28712243 0.22321054 prediction 0.402868741172963 Functional Loss - DLL4 ENSG00000128917 UTR3 Human protein_coding chr15:41230267 chr15:41230270 . . 0 24 hm5C_associated_SNPs_97713 0 0 0 0 1 DLL4 chr15:41230227 3'AG 41230227 Downstream 44bp
chr2 63217928 63217928 1 + A T KIRC 63217924 + 63217904 63217944 41 CCACAGGTGGCAAATTCACCCTCCAGTGCTGCCCAGAAAGC CCACAGGTGGCAAATTCACCCTCCTGTGCTGCCCAGAAAGC < 41bp 0.701430603823626 0.362361699773336 0.90797323 0.0219495 prediction 0.402861207647251 Functional Loss - EHBP1 ENSG00000115504 CDS Human protein_coding chr2:63217924 chr2:63217928 nonsynonymous SNV 0.817 2 25 hm5C_associated_SNPs_97721 0 0 1 0 2 EHBP1 chr2:63217851 3'AG 63217851 Downstream 78bp
chr2 63217928 63217928 1 + A T KIRC 63217924 + 63217904 63217944 41 CCACAGGTGGCAAATTCACCCTCCAGTGCTGCCCAGAAAGC CCACAGGTGGCAAATTCACCCTCCTGTGCTGCCCAGAAAGC < 41bp 0.701430603823626 0.362361699773336 0.90797323 0.0219495 prediction 0.402861207647251 Functional Loss - EHBP1 ENSG00000115504 CDS Human protein_coding chr2:63217924 chr2:63217928 nonsynonymous SNV 0.817 2 25 hm5C_associated_SNPs_97721 0 0 1 0 2 EHBP1 chr2:63217975 5'GT 63217975 Upstream 48bp
chr6 35201065 35201065 1 + G A SKCM 35201062 + 35201042 35201082 41 AAGTTTGTGCTCCATACCGACGGGAAGACATGCATCGGTGG AAGTTTGTGCTCCATACCGACGGAAAGACATGCATCGGTGG < 41bp 0.81062871680134 0.609199160945334 0.73576516 0.40578157 prediction 0.402859111712013 Functional Loss - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35201062 chr6:35201065 synonymous SNV . 0 24 hm5C_associated_SNPs_97724 0 0 0 0 1 SCUBE3 chr6:35201078 5'GT 35201078 Upstream 14bp
chr11 65829404 65829404 1 + C T GBM 65829401 + 65829381 65829421 41 CCCCATGGCTGATTGCCATGCAGCGATATGGACCACCCCCA CCCCATGGCTGATTGCCATGCAGTGATATGGACCACCCCCA < 41bp 0.751175071356545 0.549746655325968 0.20476198 0.3810869 prediction 0.402856832061154 Functional Loss - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65829401 chr11:65829404 stopgain 1.000 1 24 hm5C_associated_SNPs_97727 0 0 1 0 2 SF3B2 chr11:65829362 3'AG 65829362 Downstream 43bp
chr11 65829404 65829404 1 + C T GBM 65829401 + 65829381 65829421 41 CCCCATGGCTGATTGCCATGCAGCGATATGGACCACCCCCA CCCCATGGCTGATTGCCATGCAGTGATATGGACCACCCCCA < 41bp 0.751175071356545 0.549746655325968 0.20476198 0.3810869 prediction 0.402856832061154 Functional Loss - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65829401 chr11:65829404 stopgain 1.000 1 24 hm5C_associated_SNPs_97727 0 0 1 0 2 SF3B2 chr11:65829469 5'GT 65829469 Upstream 66bp
chr19 35769912 35769912 1 + C T UCEC 35769909 + 35769889 35769929 41 GGGAGTTGCGCCAGACCAACCAGCGCATGCAGGAGACCTTC GGGAGTTGCGCCAGACCAACCAGTGCATGCAGGAGACCTTC < 41bp 0.740182235135043 0.538754120094085 0.7833375 0.77566296 prediction 0.402856230081915 Functional Loss - USF2 ENSG00000105698 CDS Human protein_coding chr19:35769909 chr19:35769912 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_97728 0 0 1 0 2 USF2 chr19:35769873 3'AG 35769873 Downstream 40bp
chr19 35769912 35769912 1 + C T UCEC 35769909 + 35769889 35769929 41 GGGAGTTGCGCCAGACCAACCAGCGCATGCAGGAGACCTTC GGGAGTTGCGCCAGACCAACCAGTGCATGCAGGAGACCTTC < 41bp 0.740182235135043 0.538754120094085 0.7833375 0.77566296 prediction 0.402856230081915 Functional Loss - USF2 ENSG00000105698 CDS Human protein_coding chr19:35769909 chr19:35769912 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_97728 0 0 1 0 2 USF2 chr19:35769977 5'GT 35769977 Upstream 66bp
chr19 6924823 6924823 1 + C T STAD 6924820 + 6924800 6924840 41 ACCTACCTCCACCTGCACCTCTGCGTGTGTCTCCTCTTGGC ACCTACCTCCACCTGCACCTCTGTGTGTGTCTCCTCTTGGC < 41bp 0.774787336173261 0.573359312313293 0.15751332 0.092921376 prediction 0.402856047719935 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6924820 chr19:6924823 synonymous SNV . 0 24 hm5C_associated_SNPs_97729 0 0 0 0 1 ADGRE1 chr19:6924883 5'GT 6924883 Upstream 61bp
chrX 150840134 150840134 1 + G T HNSC 150840130 + 150840110 150840150 41 GAAACAACAGAAACAACACGCTGGGCAAGTGAAGCGGCCTC GAAACAACAGAAACAACACGCTGGTCAAGTGAAGCGGCCTC < 41bp 0.74910517704745 0.54767827763258 0.26596558 0.19516182 prediction 0.40285379882974 Functional Loss - PASD1 ENSG00000166049 CDS Human protein_coding chrX:150840130 chrX:150840134 synonymous SNV . 0 25 hm5C_associated_SNPs_97731 0 0 0 0 1 PASD1 chrX:150840045 3'AG 150840045 Downstream 90bp
chr3 49038942 49038942 1 + C T STAD 49038939 + 49038919 49038959 41 TGGCGCAGATGAAGGGGTTACAGCGCAGCCAGATCCTGCCT TGGCGCAGATGAAGGGGTTACAGTGCAGCCAGATCCTGCCT < 41bp 0.749068342171914 0.547645270331085 0.30144608 0.24816296 prediction 0.402846143681659 Functional Loss - P4HTM ENSG00000178467 CDS Human protein_coding chr3:49038939 chr3:49038942 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_97732 0 0 0 0 1 P4HTM chr3:49038871 3'AG 49038871 Downstream 72bp
chr19 50208370 50208370 1 + C T UCEC 50208367 + 50208347 50208387 41 CCTGAACCGCCAGGAGATACCCCCGGTGAGAGGGCCCCAGT CCTGAACCGCCAGGAGATACCCCTGGTGAGAGGGCCCCAGT < 41bp 0.763785055586644 0.562362948885096 0.35871857 0.24050629 prediction 0.402844213403096 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50208367 chr19:50208370 nonsynonymous SNV 0.047 4 24 hm5C_associated_SNPs_97733 0 0 0 0 2 CPT1C chr19:50208297 3'AG 50208297 Downstream 74bp
chr19 50208370 50208370 1 + C T UCEC 50208367 + 50208347 50208387 41 CCTGAACCGCCAGGAGATACCCCCGGTGAGAGGGCCCCAGT CCTGAACCGCCAGGAGATACCCCTGGTGAGAGGGCCCCAGT < 41bp 0.763785055586644 0.562362948885096 0.35871857 0.24050629 prediction 0.402844213403096 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50208367 chr19:50208370 nonsynonymous SNV 0.047 4 24 hm5C_associated_SNPs_97733 0 0 0 0 2 CPT1C chr19:50208371 5'GT 50208371 Upstream 2bp
chr9 78953217 78953217 1 + G A SKCM 78953214 + 78953194 78953234 41 CTGCAAGGGGTGCCAGGGCCCACGGCCCACAGACTGCCTGT CTGCAAGGGGTGCCAGGGCCCACAGCCCACAGACTGCCTGT < 41bp 0.701417797385288 0.469967455526499 0.5422985 0.23419249 prediction 0.402835594770575 Functional Loss - PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78953214 chr9:78953217 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_97735 0 0 0 0 1 PCSK5 chr9:78953146 3'AG 78953146 Downstream 72bp
chr6 42996885 42996885 1 + G T UCEC 42996882 + 42996862 42996902 41 TTCAAGGAGCTGAAACGCAGCAAGAAATTGGAGAACTTCTT TTCAAGGAGCTGAAACGCAGCAATAAATTGGAGAACTTCTT < 41bp 0.701415783346108 0.32344460376021 0.41576606 0.56453717 prediction 0.402831566692217 Functional Loss - RRP36 ENSG00000124541 CDS Human protein_coding chr6:42996882 chr6:42996885 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_97736 0 0 1 0 1 RRP36 chr6:42996830 3'AG 42996830 Downstream 56bp
chr19 1080344 1080344 1 + G C rs145609436 1080341 + 1080321 1080361 41 GGGAGCCCCCCAGAAGAAGGCGGGTGCACTGAGGGCACACC GGGAGCCCCCCAGAAGAAGGCGGCTGCACTGAGGGCACACC < 41bp 0.711315745169852 0.509902915438012 0.89436734 0.76596785 prediction 0.402825659463679 Functional Loss - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1080341 chr19:1080344 synonymous SNV . 0 24 hm5C_associated_SNPs_97742 0 0 1 0 2 ARHGAP45 chr19:1080254 3'AG 1080254 Downstream 91bp
chr19 1080344 1080344 1 + G C rs145609436 1080341 + 1080321 1080361 41 GGGAGCCCCCCAGAAGAAGGCGGGTGCACTGAGGGCACACC GGGAGCCCCCCAGAAGAAGGCGGCTGCACTGAGGGCACACC < 41bp 0.711315745169852 0.509902915438012 0.89436734 0.76596785 prediction 0.402825659463679 Functional Loss - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1080341 chr19:1080344 synonymous SNV . 0 24 hm5C_associated_SNPs_97742 0 0 1 0 2 ARHGAP45 chr19:1080378 5'GT 1080378 Upstream 35bp
chr12 75875627 75875627 1 + C T UCEC 75875624 + 75875604 75875644 41 ATTTTTGCAGACTTGGGACCCAGCACTAGCCCAAATTGCAA ATTTTTGCAGACTTGGGACCCAGTACTAGCCCAAATTGCAA < 41bp 0.741973508309687 0.540560717985697 0.1959967 0.7523675 prediction 0.402825580647979 Functional Loss - GLIPR1 ENSG00000139278 CDS Human protein_coding chr12:75875624 chr12:75875627 nonsynonymous SNV 0.069 0 24 hm5C_associated_SNPs_97743 0 0 0 0 1 GLIPR1 chr12:75875614 3'AG 75875614 Downstream 14bp
chr1 74957807 74957807 1 + C T UCEC 74957804 + 74957784 74957824 41 ATGTCTCCTGCATCAAGTAACAGCAGTGGGTCTCTCTCACC ATGTCTCCTGCATCAAGTAACAGTAGTGGGTCTCTCTCACC < 41bp 0.7313763552166 0.52996391878551 0.2220358 0.2153689 prediction 0.402824872862181 Functional Loss - FPGT-TNNI3K;TNNI3K ENSG00000116783;ENSG00000259030 CDS Human other chr1:74957804 chr1:74957807 synonymous SNV . 0 24 hm5C_associated_SNPs_97744 0 0 0 0 1 FPGT-TNNI3K;TNNI3K chr1:74957781 3'AG 74957781 Downstream 27bp
chr8 36673164 36673164 1 + G A SKCM 36673161 + 36673141 36673181 41 ATGGTGGAACTGTTTGCTAACAAGAGGAAATACACCAGTTC ATGGTGGAACTGTTTGCTAACAAAAGGAAATACACCAGTTC < 41bp 0.70141076350255 0.470958649039432 0.90725625 0.5447674 prediction 0.4028215270051 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36673161 chr8:36673164 synonymous SNV . 0 24 hm5C_associated_SNPs_97745 0 0 0 0 2 KCNU1 chr8:36673114 3'AG 36673114 Downstream 51bp
chr8 36673164 36673164 1 + G A SKCM 36673161 + 36673141 36673181 41 ATGGTGGAACTGTTTGCTAACAAGAGGAAATACACCAGTTC ATGGTGGAACTGTTTGCTAACAAAAGGAAATACACCAGTTC < 41bp 0.70141076350255 0.470958649039432 0.90725625 0.5447674 prediction 0.4028215270051 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36673161 chr8:36673164 synonymous SNV . 0 24 hm5C_associated_SNPs_97745 0 0 0 0 2 KCNU1 chr8:36673205 5'GT 36673205 Upstream 42bp
chr19 45682026 45682026 1 + A C rs8104024 45682025 + 45682005 45682045 41 AATCACAGCCCTTCAGCTGCCACGGTGAGAACGCAGCACTC AATCACAGCCCTTCAGCTGCCCCGGTGAGAACGCAGCACTC < 41bp 0.820506247800469 0.619097049278638 0.7991219 0.7933692 prediction 0.402818397043662 Functional Loss - BLOC1S3 ENSG00000189114 UTR5 Human protein_coding chr19:45682025 chr19:45682026 . . 0 22 hm5C_associated_SNPs_97747 1 0 0 0 1 BLOC1S3 chr19:45682089 5'GT 45682089 Upstream 64bp
chr11 5719562 5719562 1 + G A CESC 5719559 + 5719539 5719579 41 CCCAAGAATTATATCCAGATCGAGAGACAGAAGATTCTGAA CCCAAGAATTATATCCAGATCGAAAGACAGAAGATTCTGAA < 41bp 0.791200519219212 0.589797761759375 0.6884486 0.20640904 prediction 0.402805514919673 Functional Loss - TRIM22 ENSG00000132274 CDS Human protein_coding chr11:5719559 chr11:5719562 synonymous SNV . 0 24 hm5C_associated_SNPs_97751 0 0 0 0 2 TRIM22 chr11:5719545 3'AG 5719545 Downstream 18bp
chr11 5719562 5719562 1 + G A CESC 5719559 + 5719539 5719579 41 CCCAAGAATTATATCCAGATCGAGAGACAGAAGATTCTGAA CCCAAGAATTATATCCAGATCGAAAGACAGAAGATTCTGAA < 41bp 0.791200519219212 0.589797761759375 0.6884486 0.20640904 prediction 0.402805514919673 Functional Loss - TRIM22 ENSG00000132274 CDS Human protein_coding chr11:5719559 chr11:5719562 synonymous SNV . 0 24 hm5C_associated_SNPs_97751 0 0 0 0 2 TRIM22 chr11:5719557 3'AG 5719557 Downstream 6bp
chr6 160858113 160858113 1 + G A BRCA 160858110 + 160858090 160858130 41 CTCTATATAGACTTTTTCATCTCGGGCGTGGTGGAACTGCC CTCTATATAGACTTTTTCATCTCAGGCGTGGTGGAACTGCC < 41bp 0.818218818870071 0.616817924818937 0.24721447 0.12257713 prediction 0.402801788102268 Functional Loss - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160858110 chr6:160858113 synonymous SNV . 0 24 hm5C_associated_SNPs_97753 0 0 0 1 1 SLC22A3 chr6:160858029 3'AG 160858029 Downstream 85bp
chr2 181846811 181846811 1 + C T UCEC 181846808 + 181846788 181846828 41 AGGTCCGATGATGAGAGCCCCAGCACCAGCAGTGGCAGTTC AGGTCCGATGATGAGAGCCCCAGTACCAGCAGTGGCAGTTC < 41bp 0.775950483919286 0.574550856236767 0.202503 0.18689299 prediction 0.402799255365038 Functional Loss - UBE2E3 ENSG00000170035 CDS Human protein_coding chr2:181846808 chr2:181846811 synonymous SNV . 0 24 hm5C_associated_SNPs_97755 0 0 0 0 1 UBE2E3 chr2:181846745 3'AG 181846745 Downstream 67bp
chr16 67154014 67154014 1 + G T LUAD 67154012 + 67153992 67154032 41 ATAGGTGTCTTGCTTTATTTCAGGAATGCCTCTGGCTCAGG ATAGGTGTCTTGCTTTATTTCATGAATGCCTCTGGCTCAGG < 41bp 0.701394409568892 0.352692322310511 0.8982974 0.39597973 prediction 0.402788819137785 Functional Loss - C16orf70 ENSG00000125149 splicing Human protein_coding chr16:67154012 chr16:67154014 . 1.000 0 23 hm5C_associated_SNPs_97759 0 0 1 0 1 C16orf70 chr16:67154097 5'GT 67154097 Upstream 84bp
chrX 23945433 23945433 1 + G A COAD 23945430 + 23945410 23945450 41 ATGGAAGATGAACGTATTTTCCCGAAGTCCAAAGTAACTGA ATGGAAGATGAACGTATTTTCCCAAAGTCCAAAGTAACTGA < 41bp 0.795465030354353 0.594070738598263 0.2242136 0.22319895 prediction 0.402788583512181 Functional Loss - CXorf58 ENSG00000165182 CDS Human protein_coding chrX:23945430 chrX:23945433 synonymous SNV . 0 24 hm5C_associated_SNPs_97760 0 0 0 0 2 CXorf58 chrX:23945356 3'AG 23945356 Downstream 78bp
chrX 23945433 23945433 1 + G A COAD 23945430 + 23945410 23945450 41 ATGGAAGATGAACGTATTTTCCCGAAGTCCAAAGTAACTGA ATGGAAGATGAACGTATTTTCCCAAAGTCCAAAGTAACTGA < 41bp 0.795465030354353 0.594070738598263 0.2242136 0.22319895 prediction 0.402788583512181 Functional Loss - CXorf58 ENSG00000165182 CDS Human protein_coding chrX:23945430 chrX:23945433 synonymous SNV . 0 24 hm5C_associated_SNPs_97760 0 0 0 0 2 CXorf58 chrX:23945487 5'GT 23945487 Upstream 55bp
chr18 56390338 56390338 1 + C T OV 56390336 + 56390316 56390356 41 ATTACCGGGAGCACCCCAAGCTCAAAGCTCCTTTGGTGGAT ATTACCGGGAGCACCCCAAGCTTAAAGCTCCTTTGGTGGAT < 41bp 0.701388617745734 0.386083098160286 0.72863877 0.367414 prediction 0.402777235491468 Functional Loss - MALT1 ENSG00000172175 CDS Human protein_coding chr18:56390336 chr18:56390338 synonymous SNV . 0 23 hm5C_associated_SNPs_97765 0 0 1 0 1 MALT1 chr18:56390280 3'AG 56390280 Downstream 59bp
chr19 50363264 50363264 1 + T C LIHC 50363263 + 50363243 50363283 41 GCCGGCTGCGTGCACTTTTCCTACAAAGCATCGTGTGAGAT GCCGGCTGCGTGCACTTTTCCCACAAAGCATCGTGTGAGAT < 41bp 0.701385762783618 0.43041560313864 0.30572355 0.023399174 prediction 0.402771525567237 Functional Loss - PTOV1 ENSG00000104960 CDS Human protein_coding chr19:50363263 chr19:50363264 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_97769 0 0 1 2 1 PTOV1 chr19:50363243 3'AG 50363243 Downstream 22bp
chr19 49621224 49621224 1 + G T UCEC 49621221 + 49621201 49621241 41 AGTGCTGGAGGAGATGGAGGCCCGGTTCGAGAAGATGCGCT AGTGCTGGAGGAGATGGAGGCCCTGTTCGAGAAGATGCGCT < 41bp 0.701376034247967 0.312344834436478 0.21533892 0.1393446 prediction 0.402752068495933 Functional Loss - LIN7B ENSG00000104863 CDS Human protein_coding chr19:49621221 chr19:49621224 nonsynonymous SNV 0.985 3 24 hm5C_associated_SNPs_97774 0 0 1 0 1 LIN7B chr19:49621275 5'GT 49621275 Upstream 52bp
chr7 5334561 5334561 1 + G A SKCM 5334558 + 5334538 5334578 41 TACACGCAGGGGGTGATGACCGGGGAGAGTGAGTATCTGCA TACACGCAGGGGGTGATGACCGGAGAGAGTGAGTATCTGCA < 41bp 0.826344076919562 0.62496849394856 0.93931985 0.9238805 prediction 0.402751165942005 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5334558 chr7:5334561 synonymous SNV . 0 24 hm5C_associated_SNPs_97777 0 0 1 0 2 SLC29A4 chr7:5334491 3'AG 5334491 Downstream 71bp
chr7 5334561 5334561 1 + G A SKCM 5334558 + 5334538 5334578 41 TACACGCAGGGGGTGATGACCGGGGAGAGTGAGTATCTGCA TACACGCAGGGGGTGATGACCGGAGAGAGTGAGTATCTGCA < 41bp 0.826344076919562 0.62496849394856 0.93931985 0.9238805 prediction 0.402751165942005 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5334558 chr7:5334561 synonymous SNV . 0 24 hm5C_associated_SNPs_97777 0 0 1 0 2 SLC29A4 chr7:5334496 3'AG 5334496 Downstream 66bp
chr14 59819301 59819301 1 + G A UCEC 59819298 + 59819278 59819318 41 ACCTATTGGAGGAACATAAACACGAACTGGATCGGATGGCC ACCTATTGGAGGAACATAAACACAAACTGGATCGGATGGCC < 41bp 0.786088792315685 0.58471346681811 0.10242197 0.056206107 prediction 0.402750650995148 Functional Loss - DAAM1 ENSG00000100592 CDS Human protein_coding chr14:59819298 chr14:59819301 nonsynonymous SNV 0.958 3 24 hm5C_associated_SNPs_97778 0 0 0 0 2 DAAM1 chr14:59819244 3'AG 59819244 Downstream 58bp
chr14 59819301 59819301 1 + G A UCEC 59819298 + 59819278 59819318 41 ACCTATTGGAGGAACATAAACACGAACTGGATCGGATGGCC ACCTATTGGAGGAACATAAACACAAACTGGATCGGATGGCC < 41bp 0.786088792315685 0.58471346681811 0.10242197 0.056206107 prediction 0.402750650995148 Functional Loss - DAAM1 ENSG00000100592 CDS Human protein_coding chr14:59819298 chr14:59819301 nonsynonymous SNV 0.958 3 24 hm5C_associated_SNPs_97778 0 0 0 0 2 DAAM1 chr14:59819350 5'GT 59819350 Upstream 50bp
chr1 60309119 60309119 1 + G T UCEC 60309116 + 60309096 60309136 41 TTTCTTAGGTGACTACACTTCAAGATGAAAAGAATTCACTG TTTCTTAGGTGACTACACTTCAATATGAAAAGAATTCACTG < 41bp 0.70137452689386 0.34021406970311 0.82195127 0.2386553 prediction 0.402749053787719 Functional Loss - HOOK1 ENSG00000134709 CDS Human protein_coding chr1:60309116 chr1:60309119 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_97779 0 0 1 0 1 HOOK1 chr1:60309104 3'AG 60309104 Downstream 16bp
chr12 118457484 118457484 1 + G T LIHC 118457480 + 118457460 118457500 41 CGACTGCCACACTTGCTTCTCTACGGTCCCCCAGGGACAGG CGACTGCCACACTTGCTTCTCTACTGTCCCCCAGGGACAGG < 41bp 0.719232947340787 0.517858937592316 0.13470617 0.033308238 prediction 0.402748019496943 Functional Loss - RFC5 ENSG00000111445 CDS Human protein_coding chr12:118457480 chr12:118457484 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_97780 0 0 1 0 2 RFC5 chr12:118457437 3'AG 118457437 Downstream 48bp
chr12 118457484 118457484 1 + G T LIHC 118457480 + 118457460 118457500 41 CGACTGCCACACTTGCTTCTCTACGGTCCCCCAGGGACAGG CGACTGCCACACTTGCTTCTCTACTGTCCCCCAGGGACAGG < 41bp 0.719232947340787 0.517858937592316 0.13470617 0.033308238 prediction 0.402748019496943 Functional Loss - RFC5 ENSG00000111445 CDS Human protein_coding chr12:118457480 chr12:118457484 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_97780 0 0 1 0 2 RFC5 chr12:118457573 5'GT 118457573 Upstream 90bp
chr8 49987797 49987797 1 + G A SKCM 49987794 + 49987774 49987814 41 CGGTTGCCTGCCTTATGTAGCATGAACAGTTGATTCTGACA CGGTTGCCTGCCTTATGTAGCATAAACAGTTGATTCTGACA < 41bp 0.779886061753481 0.578514480464479 0.041457593 0.019775927 prediction 0.402743162578004 Functional Loss - C8orf22 ENSG00000168333 CDS Human protein_coding chr8:49987794 chr8:49987797 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_97781 0 0 0 0 2 C8orf22 chr8:49987711 3'AG 49987711 Downstream 87bp
chr8 49987797 49987797 1 + G A SKCM 49987794 + 49987774 49987814 41 CGGTTGCCTGCCTTATGTAGCATGAACAGTTGATTCTGACA CGGTTGCCTGCCTTATGTAGCATAAACAGTTGATTCTGACA < 41bp 0.779886061753481 0.578514480464479 0.041457593 0.019775927 prediction 0.402743162578004 Functional Loss - C8orf22 ENSG00000168333 CDS Human protein_coding chr8:49987794 chr8:49987797 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_97781 0 0 0 0 2 C8orf22 chr8:49987794 3'AG 49987794 Downstream 4bp
chr2 233410351 233410351 1 + C T HNSC 233410349 + 233410329 233410369 41 GTGGCACAGCTGGCATCTTCCTCATGGCCCACTACAACCGG GTGGCACAGCTGGCATCTTCCTTATGGCCCACTACAACCGG < 41bp 0.701371096726111 0.430080961455361 0.16370904 0.12356177 prediction 0.402742193452222 Functional Loss - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233410349 chr2:233410351 synonymous SNV . 0 23 hm5C_associated_SNPs_97783 0 0 0 0 1 CHRNG chr2:233410253 3'AG 233410253 Downstream 99bp
chr19 4224495 4224495 1 + G T OV 4224491 + 4224471 4224511 41 AGATGCAGAGACTCCAGGCTCAGGGCCGCTGAGAAAGGCCA AGATGCAGAGACTCCAGGCTCAGGTCCGCTGAGAAAGGCCA < 41bp 0.721292325050524 0.519928397565998 0.91695726 0.6643351 prediction 0.402727854969053 Functional Loss - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4224491 chr19:4224495 nonsynonymous SNV 0.972 3 25 hm5C_associated_SNPs_97789 0 0 1 0 1 ANKRD24 chr19:4224425 3'AG 4224425 Downstream 71bp
chr17 20107712 20107712 1 + G T LIHC 20107709 + 20107689 20107729 41 GGAATTTTCAGTAACTGTCTCAAGAGAGAGGTCTGTGCCAC GGAATTTTCAGTAACTGTCTCAATAGAGAGGTCTGTGCCAC < 41bp 0.701358300941957 0.315416867245177 0.35158837 0.050184876 prediction 0.402716601883913 Functional Loss - SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20107709 chr17:20107712 nonsynonymous SNV 0.964 3 24 hm5C_associated_SNPs_97796 0 0 1 0 1 SPECC1 chr17:20107646 3'AG 20107646 Downstream 67bp
chr1 246797828 246797828 1 + G T UCEC 246797826 + 246797806 246797846 41 AGTTACGGCTCTAAGGAATTCAGAAAAGGGATTTAATGGTG AGTTACGGCTCTAAGGAATTCATAAAAGGGATTTAATGGTG < 41bp 0.701357682546419 0.365590549813361 0.35590315 0.15772787 prediction 0.402715365092837 Functional Loss - CNST ENSG00000162852 CDS Human protein_coding chr1:246797826 chr1:246797828 stopgain 0.999 0 23 hm5C_associated_SNPs_97797 0 0 1 0 1 CNST chr1:246797775 3'AG 246797775 Downstream 54bp
chr19 11352346 11352346 1 + G T SARC 11352342 + 11352322 11352362 41 ATCTCCCTCCCCAGACTCCACACAGCGGCGCTCCCAGCCTG ATCTCCCTCCCCAGACTCCACACATCGGCGCTCCCAGCCTG < 41bp 0.701356412611339 0.495249206065534 0.038478404 0.02467668 prediction 0.402712825222679 Functional Loss - ANGPTL8 ENSG00000130173 CDS Human protein_coding chr19:11352342 chr19:11352346 nonsynonymous SNV 0.893 1 25 hm5C_associated_SNPs_97798 0 0 1 0 1 ANGPTL8 chr19:11352336 3'AG 11352336 Downstream 11bp
chr19 58578529 58578529 1 + G T OV 58578525 + 58578505 58578545 41 AATGCGGAAAGGCCTTTAGTCACAGCTCAGCACTTATCGAA AATGCGGAAAGGCCTTTAGTCACATCTCAGCACTTATCGAA < 41bp 0.73485786580456 0.533501546679436 0.06378263 0.058815837 prediction 0.402712638250248 Functional Loss - ZNF135 ENSG00000176293 CDS Human protein_coding chr19:58578525 chr19:58578529 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_97799 0 0 0 0 1 ZNF135 chr19:58578468 3'AG 58578468 Downstream 62bp
chr2 178301583 178301583 1 + A C HNSC 178301579 + 178301559 178301599 41 AAACTAATATTTCATATTCACAAGAGGCAGATGATCGAGTA AAACTAATATTTCATATTCACAAGCGGCAGATGATCGAGTA < 41bp 0.701353432357868 0.312810375963602 0.4028424 0.22250634 prediction 0.402706864715736 Functional Loss - AGPS ENSG00000018510 CDS Human protein_coding chr2:178301579 chr2:178301583 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_97803 0 0 1 0 2 AGPS chr2:178301492 3'AG 178301492 Downstream 92bp
chr2 178301583 178301583 1 + A C HNSC 178301579 + 178301559 178301599 41 AAACTAATATTTCATATTCACAAGAGGCAGATGATCGAGTA AAACTAATATTTCATATTCACAAGCGGCAGATGATCGAGTA < 41bp 0.701353432357868 0.312810375963602 0.4028424 0.22250634 prediction 0.402706864715736 Functional Loss - AGPS ENSG00000018510 CDS Human protein_coding chr2:178301579 chr2:178301583 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_97803 0 0 1 0 2 AGPS chr2:178301612 5'GT 178301612 Upstream 30bp
chr14 31354713 31354713 1 - G A LUSC 31354715 - 31354695 31354735 41 CTGGCCACAATGCCTGCTTCCTCGATGTCATCAGAAGGCCA CTGGCCACAATGCCTGCTTCCTTGATGTCATCAGAAGGCCA < 41bp 0.87963117307387 0.678284035198301 0.7202102 0.09626937 prediction 0.402694275751137 Functional Loss - COCH ENSG00000100473 CDS Human protein_coding chr14:31354715 chr14:31354713 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_97807 0 0 0 0 1 COCH chr14:31354619 5'GT 31354619 Upstream 95bp
chr1 46876099 46876099 1 + G T LUAD 46876095 + 46876075 46876115 41 GTGATTTCGTGGACCCCTGCCTGGGGGACCTGGTCTCAATT GTGATTTCGTGGACCCCTGCCTGGTGGACCTGGTCTCAATT < 41bp 0.716581284012052 0.515234232802587 0.86263037 0.36421603 prediction 0.402694102418929 Functional Loss - FAAH ENSG00000117480 CDS Human protein_coding chr1:46876095 chr1:46876099 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_97808 0 0 0 0 2 FAAH chr1:46876070 3'AG 46876070 Downstream 30bp
chr1 46876099 46876099 1 + G T LUAD 46876095 + 46876075 46876115 41 GTGATTTCGTGGACCCCTGCCTGGGGGACCTGGTCTCAATT GTGATTTCGTGGACCCCTGCCTGGTGGACCTGGTCTCAATT < 41bp 0.716581284012052 0.515234232802587 0.86263037 0.36421603 prediction 0.402694102418929 Functional Loss - FAAH ENSG00000117480 CDS Human protein_coding chr1:46876095 chr1:46876099 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_97808 0 0 0 0 2 FAAH chr1:46876169 5'GT 46876169 Upstream 71bp
chr10 102239648 102239648 1 + C T LIHC 102239645 + 102239625 102239665 41 CTACAGGCTTACCTGATTTACTCCAGCAGTGTGGCAGCTGG CTACAGGCTTACCTGATTTACTCTAGCAGTGTGGCAGCTGG < 41bp 0.791320472067531 0.589980380113624 0.9578811 0.9320972 prediction 0.402680183907814 Functional Loss - WNT8B ENSG00000075290 CDS Human protein_coding chr10:102239645 chr10:102239648 synonymous SNV . 0 24 hm5C_associated_SNPs_97812 0 0 0 0 1 WNT8B chr10:102239631 3'AG 102239631 Downstream 18bp
chr3 129198657 129198657 1 + C T STAD 129198654 + 129198634 129198674 41 CGGCTGCAGTGCCTGTCCTTCAGCGGAGTGAAGGAGCGGGA CGGCTGCAGTGCCTGTCCTTCAGTGGAGTGAAGGAGCGGGA < 41bp 0.710632869777597 0.509294874797909 0.76334465 0.54049736 prediction 0.402675989959377 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129198654 chr3:129198657 synonymous SNV . 0 24 hm5C_associated_SNPs_97814 0 0 0 0 2 IFT122 chr3:129198609 3'AG 129198609 Downstream 49bp
chr3 129198657 129198657 1 + C T STAD 129198654 + 129198634 129198674 41 CGGCTGCAGTGCCTGTCCTTCAGCGGAGTGAAGGAGCGGGA CGGCTGCAGTGCCTGTCCTTCAGTGGAGTGAAGGAGCGGGA < 41bp 0.710632869777597 0.509294874797909 0.76334465 0.54049736 prediction 0.402675989959377 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129198654 chr3:129198657 synonymous SNV . 0 24 hm5C_associated_SNPs_97814 0 0 0 0 2 IFT122 chr3:129198628 3'AG 129198628 Downstream 30bp
chr1 158261018 158261018 1 + G A rs531011689 158261015 + 158260995 158261035 41 CAGGGCTCAGGATGGCTGGACGAGTTGCAGACTCATGGCTG CAGGGCTCAGGATGGCTGGACGAATTGCAGACTCATGGCTG < 41bp 0.701336627587935 0.443140501443332 0.32443377 0.3475725 prediction 0.40267325517587 Functional Loss - CD1C ENSG00000158481 CDS Human protein_coding chr1:158261015 chr1:158261018 synonymous SNV . 0 24 hm5C_associated_SNPs_97816 0 0 0 0 1 CD1C chr1:158260924 3'AG 158260924 Downstream 95bp
chr1 158261017 158261017 1 + A T STAD 158261015 + 158260995 158261035 41 CAGGGCTCAGGATGGCTGGACGAGTTGCAGACTCATGGCTG CAGGGCTCAGGATGGCTGGACGTGTTGCAGACTCATGGCTG < 41bp 0.701336627587935 0.489597283152875 0.32443377 0.3118827 prediction 0.40267325517587 Functional Loss - CD1C ENSG00000158481 CDS Human protein_coding chr1:158261015 chr1:158261017 nonsynonymous SNV 0.122 2 23 hm5C_associated_SNPs_97817 0 0 0 0 1 CD1C chr1:158260924 3'AG 158260924 Downstream 94bp
chr1 173806113 173806113 1 + T C GBM 173806112 + 173806092 173806132 41 TTTAGTACCATCCAGGGAACCTGGAAAGTTTTATTCTCTCC TTTAGTACCATCCAGGGAACCCGGAAAGTTTTATTCTCTCC < 41bp 0.835072707680985 0.633737752057107 0.29344064 0.28309637 prediction 0.402669911247755 Functional Loss - DARS2 ENSG00000117593 CDS Human protein_coding chr1:173806112 chr1:173806113 synonymous SNV . 0 22 hm5C_associated_SNPs_97818 0 0 1 0 1 DARS2 chr1:173806184 5'GT 173806184 Upstream 72bp
chr2 233272986 233272986 1 + G A SKCM 233272983 + 233272963 233273003 41 TCCTCTGTTCCCAGGTGATCCTAGGTGGAGGCCGAAAGTAC TCCTCTGTTCCCAGGTGATCCTAAGTGGAGGCCGAAAGTAC < 41bp 0.701327856714748 0.451632430293827 0.5691133 0.3934344 prediction 0.402655713429496 Functional Loss - ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233272983 chr2:233272986 nonsynonymous SNV 0.139 5 24 hm5C_associated_SNPs_97821 0 0 0 0 1 ALPPL2 chr2:233272977 3'AG 233272977 Downstream 10bp
chr19 50091848 50091848 1 + G T SARC 50091846 + 50091826 50091866 41 GCCTGGGAGCCTTTTGGTATCTGCGCTGGCGACAGCACCGA GCCTGGGAGCCTTTTGGTATCTTCGCTGGCGACAGCACCGA < 41bp 0.918359735230716 0.717033676414791 0.23956966 0.1455859 prediction 0.40265211763185 Functional Loss - PRRG2 ENSG00000126460 CDS Human protein_coding chr19:50091846 chr19:50091848 synonymous SNV . 0 23 hm5C_associated_SNPs_97823 0 0 0 0 1 PRRG2 chr19:50091754 3'AG 50091754 Downstream 95bp
chr17 43246457 43246457 1 + C T COAD 43246454 + 43246434 43246474 41 GTGGTTCCCTGCCCCTGACACCGCGGATGGAGAGCCACTCA GTGGTTCCCTGCCCCTGACACCGTGGATGGAGAGCCACTCA < 41bp 0.731058814975728 0.52973450284444 0.5801301 0.31887335 prediction 0.402648624262575 Functional Loss - HEXIM2 ENSG00000168517 CDS Human protein_coding chr17:43246454 chr17:43246457 nonsynonymous SNV 0.013 2 24 hm5C_associated_SNPs_97826 0 0 1 0 1 HEXIM2 chr17:43246382 3'AG 43246382 Downstream 76bp
chr9 4679895 4679895 1 + C T UCEC 4679893 + 4679873 4679913 41 CCGCAGCTGCCAGGCGGCGGCGCCCAGGTGAGAAGGGGCCT CCGCAGCTGCCAGGCGGCGGCGTCCAGGTGAGAAGGGGCCT < 41bp 0.701320448377063 0.440209333755009 0.82536745 0.8535732 prediction 0.402640896754127 Functional Loss - CDC37L1 ENSG00000106993 CDS Human protein_coding chr9:4679893 chr9:4679895 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_97830 0 0 1 0 1 CDC37L1 chr9:4679899 5'GT 4679899 Upstream 5bp
chr12 9004388 9004388 1 + G A rs74582459 9004385 + 9004365 9004405 41 CTTGTGTTTTCACAGTAACTCGGGGAAGGAGGCGGTCCACG CTTGTGTTTTCACAGTAACTCGGAGAAGGAGGCGGTCCACG < 41bp 0.837060754138621 0.635741022229447 0.91924506 0.882918 prediction 0.402639463818348 Functional Loss - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9004385 chr12:9004388 nonsynonymous SNV 0.053 4 24 hm5C_associated_SNPs_97831 1 0 0 0 1 A2ML1 chr12:9004380 3'AG 9004380 Downstream 9bp
chr8 70533314 70533314 1 + C T ACC 70533312 + 70533292 70533332 41 CATCTGGCAAGCTTCGAATTCACAAGTGTAAAGGACCCAGT CATCTGGCAAGCTTCGAATTCATAAGTGTAAAGGACCCAGT < 41bp 0.701319575113843 0.40215864063075 0.08189839 0.12925258 prediction 0.402639150227686 Functional Loss - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70533312 chr8:70533314 synonymous SNV . 0 23 hm5C_associated_SNPs_97832 0 0 0 0 1 SULF1 chr8:70533270 3'AG 70533270 Downstream 45bp
chr20 43559220 43559220 1 + C T ACC 43559217 + 43559197 43559237 41 ATCGTGGGCACCAAGCCACTCTACGTGGCACTGGCCCAGCG ATCGTGGGCACCAAGCCACTCTATGTGGCACTGGCCCAGCG < 41bp 0.753517562382352 0.552201151907264 0.21160573 0.12877733 prediction 0.402632820950176 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43559217 chr20:43559220 synonymous SNV . 0 24 hm5C_associated_SNPs_97835 0 0 1 0 1 PABPC1L chr20:43559159 3'AG 43559159 Downstream 62bp
chr10 73992792 73992792 1 + G T LUAD 73992789 + 73992769 73992809 41 TGCTCGGATGGAAAAACTAGCTGGTTTGGTAGAAGAGCTGG TGCTCGGATGGAAAAACTAGCTGTTTTGGTAGAAGAGCTGG < 41bp 0.701314942851475 0.326467502795753 0.5591834 0.28458077 prediction 0.402629885702949 Functional Loss - ANAPC16 ENSG00000166295 CDS Human protein_coding chr10:73992789 chr10:73992792 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_97837 0 0 1 0 1 ANAPC16 chr10:73992759 3'AG 73992759 Downstream 34bp
chr8 20074768 20074768 1 + G A LUAD 20074765 + 20074745 20074785 41 CAATGTGCTGCCCTCACTATCACGGTTAATGAAGTCTGCTA CAATGTGCTGCCCTCACTATCACAGTTAATGAAGTCTGCTA < 41bp 0.818771695278164 0.617458052107137 0.9041303 0.8828012 prediction 0.402627286342053 Functional Loss - ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20074765 chr8:20074768 nonsynonymous SNV 0.915 4 24 hm5C_associated_SNPs_97839 0 0 1 0 2 ATP6V1B2 chr8:20074731 3'AG 20074731 Downstream 38bp
chr8 20074768 20074768 1 + G A LUAD 20074765 + 20074745 20074785 41 CAATGTGCTGCCCTCACTATCACGGTTAATGAAGTCTGCTA CAATGTGCTGCCCTCACTATCACAGTTAATGAAGTCTGCTA < 41bp 0.818771695278164 0.617458052107137 0.9041303 0.8828012 prediction 0.402627286342053 Functional Loss - ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20074765 chr8:20074768 nonsynonymous SNV 0.915 4 24 hm5C_associated_SNPs_97839 0 0 1 0 2 ATP6V1B2 chr8:20074835 5'GT 20074835 Upstream 68bp
chr6 160500620 160500620 1 + C T UCEC 160500618 + 160500598 160500638 41 TGGTTTTTGTCCAGGTGACTCGCGACTCGCGCACCTACAGC TGGTTTTTGTCCAGGTGACTCGTGACTCGCGCACCTACAGC < 41bp 0.70131318500355 0.435740627548889 0.69436884 0.2639347 prediction 0.4026263700071 Functional Loss - IGF2R ENSG00000197081 CDS Human protein_coding chr6:160500618 chr6:160500620 synonymous SNV . 0 23 hm5C_associated_SNPs_97840 0 0 1 0 1 IGF2R chr6:160500612 3'AG 160500612 Downstream 9bp
chr2 242157737 242157737 1 + C T BLCA 242157735 + 242157715 242157755 41 CCCACGACCTGCGCGGCTTCCTCAACTTCACGCTGGCGCGA CCCACGACCTGCGCGGCTTCCTTAACTTCACGCTGGCGCGA < 41bp 0.861672457369431 0.660362571717914 0.40904242 0.23042887 prediction 0.402619771303034 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242157735 chr2:242157737 synonymous SNV . 0 23 hm5C_associated_SNPs_97842 0 0 1 0 2 ANO7 chr2:242157654 3'AG 242157654 Downstream 84bp
chr2 242157737 242157737 1 + C T BLCA 242157735 + 242157715 242157755 41 CCCACGACCTGCGCGGCTTCCTCAACTTCACGCTGGCGCGA CCCACGACCTGCGCGGCTTCCTTAACTTCACGCTGGCGCGA < 41bp 0.861672457369431 0.660362571717914 0.40904242 0.23042887 prediction 0.402619771303034 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242157735 chr2:242157737 synonymous SNV . 0 23 hm5C_associated_SNPs_97842 0 0 1 0 2 ANO7 chr2:242157796 5'GT 242157796 Upstream 60bp
chr19 14705584 14705584 1 + C T STAD 14705581 + 14705561 14705601 41 TCTCTTCTAGGCCTGGACCTCGCCGCTGTCACCTGTCCACC TCTCTTCTAGGCCTGGACCTCGCTGCTGTCACCTGTCCACC < 41bp 0.701306738201723 0.490688471651696 0.13953906 0.0688006 prediction 0.402613476403446 Functional Loss - CLEC17A ENSG00000187912 CDS Human protein_coding chr19:14705581 chr19:14705584 synonymous SNV . 0 24 hm5C_associated_SNPs_97845 0 0 0 0 2 CLEC17A chr19:14705571 3'AG 14705571 Downstream 14bp
chr19 14705584 14705584 1 + C T STAD 14705581 + 14705561 14705601 41 TCTCTTCTAGGCCTGGACCTCGCCGCTGTCACCTGTCCACC TCTCTTCTAGGCCTGGACCTCGCTGCTGTCACCTGTCCACC < 41bp 0.701306738201723 0.490688471651696 0.13953906 0.0688006 prediction 0.402613476403446 Functional Loss - CLEC17A ENSG00000187912 CDS Human protein_coding chr19:14705581 chr19:14705584 synonymous SNV . 0 24 hm5C_associated_SNPs_97845 0 0 0 0 2 CLEC17A chr19:14705612 5'GT 14705612 Upstream 29bp
chr2 162821608 162821608 1 + G A STAD 162821605 + 162821585 162821625 41 AAGTTGATGGACTTGTTGTTCACGAAGCGGGAACTCAGCTG AAGTTGATGGACTTGTTGTTCACAAAGCGGGAACTCAGCTG < 41bp 0.778565632546569 0.577262294732858 0.46299323 0.22835872 prediction 0.402606675627423 Functional Loss - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162821605 chr2:162821608 synonymous SNV . 0 24 hm5C_associated_SNPs_97847 0 0 0 0 2 SLC4A10 chr2:162821561 3'AG 162821561 Downstream 48bp
chr2 162821608 162821608 1 + G A STAD 162821605 + 162821585 162821625 41 AAGTTGATGGACTTGTTGTTCACGAAGCGGGAACTCAGCTG AAGTTGATGGACTTGTTGTTCACAAAGCGGGAACTCAGCTG < 41bp 0.778565632546569 0.577262294732858 0.46299323 0.22835872 prediction 0.402606675627423 Functional Loss - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162821605 chr2:162821608 synonymous SNV . 0 24 hm5C_associated_SNPs_97847 0 0 0 0 2 SLC4A10 chr2:162821683 5'GT 162821683 Upstream 76bp
chr1 233802387 233802387 1 + C T SARC 233802384 + 233802364 233802404 41 TCAGATGGAGGTAAGGCCTTCTGCATCATCTACTCCGTCAT TCAGATGGAGGTAAGGCCTTCTGTATCATCTACTCCGTCAT < 41bp 0.760371025128985 0.559069391066522 0.16000414 0.19049674 prediction 0.402603268124925 Functional Loss - KCNK1 ENSG00000135750 CDS Human protein_coding chr1:233802384 chr1:233802387 synonymous SNV . 0 24 hm5C_associated_SNPs_97849 0 0 1 1 1 KCNK1 chr1:233802341 3'AG 233802341 Downstream 47bp
chr22 50316312 50316312 1 + C T UCEC 50316309 + 50316289 50316329 41 GGCCTGACCAACAGAGACTGCGGCGAGTGTGAAGTGGGCTG GGCCTGACCAACAGAGACTGCGGTGAGTGTGAAGTGGGCTG < 41bp 0.744840728656665 0.543545362597803 0.6688422 0.4176257 prediction 0.402590732117725 Functional Loss - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50316309 chr22:50316312 synonymous SNV . 0 24 hm5C_associated_SNPs_97853 0 0 1 0 2 CRELD2 chr22:50316260 3'AG 50316260 Downstream 53bp
chr22 50316312 50316312 1 + C T UCEC 50316309 + 50316289 50316329 41 GGCCTGACCAACAGAGACTGCGGCGAGTGTGAAGTGGGCTG GGCCTGACCAACAGAGACTGCGGTGAGTGTGAAGTGGGCTG < 41bp 0.744840728656665 0.543545362597803 0.6688422 0.4176257 prediction 0.402590732117725 Functional Loss - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50316309 chr22:50316312 synonymous SNV . 0 24 hm5C_associated_SNPs_97853 0 0 1 0 2 CRELD2 chr22:50316355 5'GT 50316355 Upstream 44bp
chr9 140146307 140146307 1 + G A SKCM 140146304 + 140146284 140146324 41 AGGTTACAGACGGGCACCCCCCAGGAGTCCCTGCCCACCTA AGGTTACAGACGGGCACCCCCCAAGAGTCCCTGCCCACCTA < 41bp 0.701293003345435 0.439355392000711 0.163174 0.12885112 prediction 0.40258600669087 Functional Loss - STPG3 ENSG00000197768 CDS Human protein_coding chr9:140146304 chr9:140146307 synonymous SNV . 0 24 hm5C_associated_SNPs_97855 0 0 0 0 1 STPG3 chr9:140146347 5'GT 140146347 Upstream 41bp
chr10 95347024 95347024 1 + G A rs74335440 95347021 + 95347001 95347041 41 CTCACGGTAAGCCTGGCCTACTCGGAGAGCCACCAGATCCG CTCACGGTAAGCCTGGCCTACTCAGAGAGCCACCAGATCCG < 41bp 0.824877758420353 0.62358509077306 0.123597205 0.06554979 prediction 0.402585335294587 Functional Loss - FFAR4 ENSG00000186188 CDS Human protein_coding chr10:95347021 chr10:95347024 synonymous SNV . 0 24 hm5C_associated_SNPs_97856 0 0 0 0 1 FFAR4 chr10:95346977 3'AG 95346977 Downstream 48bp
chr22 42172145 42172145 1 + G T UCEC 42172141 + 42172121 42172161 41 AGCCCAGTGGACACAGCTCACAAGGTACTGATTAGCCTGAG AGCCCAGTGGACACAGCTCACAAGTTACTGATTAGCCTGAG < 41bp 0.737957895749698 0.536665251213787 0.9039701 0.73248506 prediction 0.402585289071822 Functional Loss - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42172141 chr22:42172145 nonsynonymous SNV 0.484 3 25 hm5C_associated_SNPs_97857 0 0 0 0 1 MEI1 chr22:42172106 3'AG 42172106 Downstream 40bp
chr3 40499482 40499482 1 + G T OV 40499479 + 40499459 40499499 41 GTAGATGTTATTGATCAGAACAGGGTAAGTGTCACAACTTT GTAGATGTTATTGATCAGAACAGTGTAAGTGTCACAACTTT < 41bp 0.701291021102309 0.32386467942531 0.8110789 0.32244182 prediction 0.402582042204618 Functional Loss - RPL14 ENSG00000188846 CDS Human protein_coding chr3:40499479 chr3:40499482 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_97859 0 0 1 0 1 RPL14 chr3:40499482 3'AG 40499482 Downstream 1bp
chr12 91341510 91341510 1 + G A rs7963128 91341507 + 91341487 91341527 41 CAAAAGCAGGACGAGAGCTGCCCGGAAGACATCTACCTGGC CAAAAGCAGGACGAGAGCTGCCCAGAAGACATCTACCTGGC < 41bp 0.701290146156787 0.478937521400017 0.2941572 0.15077564 prediction 0.402580292313574 Functional Loss - LINC00615 ENSG00000196243 ncRNA_exonic Human lincRNA chr12:91341507 chr12:91341510 . . 0 24 hm5C_associated_SNPs_97860 0 0 0 0 1 LINC00615 chr12:91341432 3'AG 91341432 Downstream 79bp
chr7 90613515 90613515 1 + G T LGG 90613513 + 90613493 90613533 41 CCAAGGAGTTGCTGCTTTTCCAGGAATGAAAGACATTCAGG CCAAGGAGTTGCTGCTTTTCCATGAATGAAAGACATTCAGG < 41bp 0.701288365582849 0.409905090669572 0.6476591 0.1136491 prediction 0.402576731165698 Functional Loss - CDK14 ENSG00000058091 CDS Human protein_coding chr7:90613513 chr7:90613515 stopgain 1.000 1 23 hm5C_associated_SNPs_97862 0 0 0 0 2 CDK14 chr7:90613463 3'AG 90613463 Downstream 53bp
chr7 90613515 90613515 1 + G T LGG 90613513 + 90613493 90613533 41 CCAAGGAGTTGCTGCTTTTCCAGGAATGAAAGACATTCAGG CCAAGGAGTTGCTGCTTTTCCATGAATGAAAGACATTCAGG < 41bp 0.701288365582849 0.409905090669572 0.6476591 0.1136491 prediction 0.402576731165698 Functional Loss - CDK14 ENSG00000058091 CDS Human protein_coding chr7:90613513 chr7:90613515 stopgain 1.000 1 23 hm5C_associated_SNPs_97862 0 0 0 0 2 CDK14 chr7:90613556 5'GT 90613556 Upstream 42bp
chr2 10188670 10188670 1 + G A UCEC 10188667 + 10188647 10188687 41 GTATGCAGCTTCCCAGGTTGCCGGAAGACCTACTTCAAAAG GTATGCAGCTTCCCAGGTTGCCGAAAGACCTACTTCAAAAG < 41bp 0.701286526655547 0.457005236466592 0.37857622 0.1303123 prediction 0.402573053311093 Functional Loss - KLF11 ENSG00000172059 CDS Human protein_coding chr2:10188667 chr2:10188670 synonymous SNV . 0 24 hm5C_associated_SNPs_97864 0 0 1 0 1 KLF11 chr2:10188722 5'GT 10188722 Upstream 53bp
chr12 57389041 57389041 1 + C T COAD 57389038 + 57389018 57389058 41 CCTGGCCCCTCGGAGGGGGTCACCGCAGTGCCTACCAGTGA CCTGGCCCCTCGGAGGGGGTCACTGCAGTGCCTACCAGTGA < 41bp 0.72348550516255 0.52220126233887 0.58931154 0.8172033 prediction 0.40256848564736 Functional Loss - GPR182 ENSG00000166856 CDS Human protein_coding chr12:57389038 chr12:57389041 synonymous SNV . 0 24 hm5C_associated_SNPs_97865 0 0 0 0 1 GPR182 chr12:57388978 3'AG 57388978 Downstream 64bp
chr2 24881613 24881613 1 + C T COAD 24881611 + 24881591 24881631 41 CTCACATAAGAGGAAAGGATCGCCATGTGACACACTGGCAT CTCACATAAGAGGAAAGGATCGTCATGTGACACACTGGCAT < 41bp 0.701281413117075 0.404578778154431 0.7377519 0.5111422 prediction 0.40256282623415 Functional Loss - NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24881611 chr2:24881613 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_97866 0 0 1 0 2 NCOA1 chr2:24881530 3'AG 24881530 Downstream 84bp
chr2 24881613 24881613 1 + C T COAD 24881611 + 24881591 24881631 41 CTCACATAAGAGGAAAGGATCGCCATGTGACACACTGGCAT CTCACATAAGAGGAAAGGATCGTCATGTGACACACTGGCAT < 41bp 0.701281413117075 0.404578778154431 0.7377519 0.5111422 prediction 0.40256282623415 Functional Loss - NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24881611 chr2:24881613 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_97866 0 0 1 0 2 NCOA1 chr2:24881635 5'GT 24881635 Upstream 23bp
chr16 84494380 84494380 1 + C T COAD 84494377 + 84494357 84494397 41 ATGTCCGCGGCCATCATCATCAGCGGGACCCTCTTTATCTT ATGTCCGCGGCCATCATCATCAGTGGGACCCTCTTTATCTT < 41bp 0.758532270917724 0.557252346172368 0.85312474 0.8068347 prediction 0.402559849490712 Functional Loss - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84494377 chr16:84494380 synonymous SNV . 0 24 hm5C_associated_SNPs_97870 0 0 0 0 1 ATP2C2 chr16:84494407 5'GT 84494407 Upstream 28bp
chr17 48182745 48182745 1 + A C PRAD 48182741 + 48182721 48182761 41 CCGCCCCCACACAGGTATGTCCAGAGCCTCCTGGACATCAT CCGCCCCCACACAGGTATGTCCAGCGCCTCCTGGACATCAT < 41bp 0.701279305251875 0.290263188666309 0.25021875 0.10775691 prediction 0.40255861050375 Functional Loss - PDK2 ENSG00000005882 CDS Human protein_coding chr17:48182741 chr17:48182745 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_97871 0 0 0 0 2 PDK2 chr17:48182735 3'AG 48182735 Downstream 11bp
chr17 48182745 48182745 1 + A C PRAD 48182741 + 48182721 48182761 41 CCGCCCCCACACAGGTATGTCCAGAGCCTCCTGGACATCAT CCGCCCCCACACAGGTATGTCCAGCGCCTCCTGGACATCAT < 41bp 0.701279305251875 0.290263188666309 0.25021875 0.10775691 prediction 0.40255861050375 Functional Loss - PDK2 ENSG00000005882 CDS Human protein_coding chr17:48182741 chr17:48182745 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_97871 0 0 0 0 2 PDK2 chr17:48182806 5'GT 48182806 Upstream 62bp
chr20 37383680 37383680 1 + G A STAD 37383677 + 37383657 37383697 41 TCCCATTTTCCAGCAAGCTCCTGGGCAGCACTCTGACCTCT TCCCATTTTCCAGCAAGCTCCTGAGCAGCACTCTGACCTCT < 41bp 0.70127589087585 0.449588977227623 0.3767357 0.1400055 prediction 0.4025517817517 Functional Loss - ACTR5 ENSG00000101442 CDS Human protein_coding chr20:37383677 chr20:37383680 nonsynonymous SNV 0.992 2 24 hm5C_associated_SNPs_97874 0 0 1 0 1 ACTR5 chr20:37383600 3'AG 37383600 Downstream 81bp
chr2 233243925 233243925 1 + C T STAD 233243922 + 233243902 233243942 41 TCCTTCAGGGATGGGGGTGTCTACGGTGACAGCTGCCAGGA TCCTTCAGGGATGGGGGTGTCTATGGTGACAGCTGCCAGGA < 41bp 0.727767343977876 0.526494314497841 0.9001745 0.74639094 prediction 0.402546058960069 Functional Loss - ALPP ENSG00000163283 CDS Human protein_coding chr2:233243922 chr2:233243925 nonsynonymous SNV 0.715 5 24 hm5C_associated_SNPs_97875 0 0 0 0 1 ALPP chr2:233243910 3'AG 233243910 Downstream 16bp
chr1 76254912 76254912 1 + G A BLCA 76254909 + 76254889 76254929 41 GGTCTGACAGTAATGGATCTCATGGGACAACTTCATCGCAT GGTCTGACAGTAATGGATCTCATAGGACAACTTCATCGCAT < 41bp 0.769210954838144 0.567941574182608 0.20437264 0.052229285 prediction 0.402538761311073 Functional Loss - RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76254909 chr1:76254912 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_97877 0 0 1 1 1 RABGGTB chr1:76254844 3'AG 76254844 Downstream 69bp
chr5 139928534 139928534 1 + G A COAD 139928531 + 139928511 139928551 41 CGAAAGTTCCTGCTGGAGTGCAAGAACTCACCCATTGCCCG CGAAAGTTCCTGCTGGAGTGCAAAAACTCACCCATTGCCCG < 41bp 0.7012682016905 0.454755095043397 0.053900003 0.0229446 prediction 0.402536403381 Functional Loss - ANKHD1-EIF4EBP3;EIF4EBP3 ENSG00000131503;ENSG00000243056;ENSG00000254996 CDS Human other chr5:139928531 chr5:139928534 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_97879 0 0 1 0 1 ANKHD1-EIF4EBP3;EIF4EBP3 chr5:139928491 3'AG 139928491 Downstream 44bp
chr8 145730076 145730076 1 + G T THYM 145730073 + 145730053 145730093 41 AGGCCCATCACCTTCCTGCGCCAGGTGAGGCTCCTGCACTG AGGCCCATCACCTTCCTGCGCCATGTGAGGCTCCTGCACTG < 41bp 0.701266536722578 0.30260879308576 0.91646624 0.6339259 prediction 0.402533073445157 Functional Loss - GPT ENSG00000167701 CDS Human protein_coding chr8:145730073 chr8:145730076 nonsynonymous SNV 0.873 4 24 hm5C_associated_SNPs_97880 0 0 0 0 1 GPT chr8:145730076 5'GT 145730076 Upstream 1bp
chr20 30411299 30411299 1 + G T UCEC 30411295 + 30411275 30411315 41 CCCAGATGATTGCCCGCCACCTCCGGCCCCCTTCCCTCACC CCCAGATGATTGCCCGCCACCTCCTGCCCCCTTCCCTCACC < 41bp 0.743362823596225 0.542097611027556 0.065832704 0.013462901 prediction 0.402530425137338 Functional Loss - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30411295 chr20:30411299 synonymous SNV . 0 25 hm5C_associated_SNPs_97882 0 0 0 0 1 MYLK2 chr20:30411280 3'AG 30411280 Downstream 20bp
chr19 54656195 54656195 1 + C T UCEC 54656192 + 54656172 54656212 41 CCTGAGCAGTACATCAGCACCTCCGGCCTCAGCCCAGCCGC CCTGAGCAGTACATCAGCACCTCTGGCCTCAGCCCAGCCGC < 41bp 0.791383242047471 0.590118427344647 0.26171523 0.2860669 prediction 0.40252962940565 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54656192 chr19:54656195 nonsynonymous SNV 0.905 3 24 hm5C_associated_SNPs_97883 0 0 1 0 1 CNOT3 chr19:54656165 3'AG 54656165 Downstream 31bp
chr10 22653828 22653828 1 + A T HNSC 22653824 + 22653804 22653844 41 TCTTCTTCTGGACGTGGTCCCAACAATTCAACAGACTGCTG TCTTCTTCTGGACGTGGTCCCAACTATTCAACAGACTGCTG < 41bp 0.701263051664817 0.363759164037302 0.15770686 0.04203573 prediction 0.402526103329633 Functional Loss - SPAG6 ENSG00000077327 CDS Human protein_coding chr10:22653824 chr10:22653828 synonymous SNV . 0 25 hm5C_associated_SNPs_97886 0 0 0 0 1 SPAG6 chr10:22653782 3'AG 22653782 Downstream 47bp
chr2 233321725 233321725 1 + G T LUAD 233321723 + 233321703 233321743 41 GTGCAGCCGCCCGCTTTAACCAGTGCAACACGACACGCGGC GTGCAGCCGCCCGCTTTAACCATTGCAACACGACACGCGGC < 41bp 0.701262562612096 0.339531605232285 0.81450164 0.088456005 prediction 0.402525125224192 Functional Loss - ALPI ENSG00000163295 CDS Human protein_coding chr2:233321723 chr2:233321725 nonsynonymous SNV 0.303 2 23 hm5C_associated_SNPs_97888 0 0 1 0 1 ALPI chr2:233321783 5'GT 233321783 Upstream 59bp
chr21 48068520 48068520 1 + C T STAD 48068518 + 48068498 48068538 41 TCTCTTCTGTGCACACTATGCGCGGCCTAGAGCGGTGAGTG TCTCTTCTGTGCACACTATGCGTGGCCTAGAGCGGTGAGTG < 41bp 0.851951500774702 0.650689179468475 0.43893784 0.3944667 prediction 0.402524642612453 Functional Loss - PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48068518 chr21:48068520 nonsynonymous SNV 0.002 3 23 hm5C_associated_SNPs_97889 0 0 1 0 1 PRMT2 chr21:48068531 5'GT 48068531 Upstream 12bp
chr3 58486719 58486719 1 + C T UCEC 58486716 + 58486696 58486736 41 TGTAGGTGGACACTTGTATACAACGTCTCTCACCACATTGA TGTAGGTGGACACTTGTATACAATGTCTCTCACCACATTGA < 41bp 0.72168456053674 0.520424671646558 0.060619473 0.07902256 prediction 0.402519777780364 Functional Loss - KCTD6 ENSG00000168301 CDS Human protein_coding chr3:58486716 chr3:58486719 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_97891 0 0 1 0 1 KCTD6 chr3:58486673 3'AG 58486673 Downstream 47bp
chr11 77920533 77920533 1 + G T UCEC 77920531 + 77920511 77920551 41 AAACGGGCACAAGGATCTGCCAGAAACTCAAGCAGTCCAGC AAACGGGCACAAGGATCTGCCATAAACTCAAGCAGTCCAGC < 41bp 0.701259453738001 0.340214789879249 0.5843755 0.22118157 prediction 0.402518907476002 Functional Loss - USP35 ENSG00000118369 CDS Human protein_coding chr11:77920531 chr11:77920533 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_97892 0 0 0 0 1 USP35 chr11:77920494 3'AG 77920494 Downstream 40bp
chr19 7569281 7569281 1 + G A SKCM 7569278 + 7569258 7569298 41 AGAAACAGGCCTACAGGCCCCAGGATCTGCCTGAAGATAGG AGAAACAGGCCTACAGGCCCCAGAATCTGCCTGAAGATAGG < 41bp 0.819225147181388 0.617965706375419 0.36812323 0.04810959 prediction 0.402518881611938 Functional Loss - TEX45 ENSG00000198723 CDS Human protein_coding chr19:7569278 chr19:7569281 nonsynonymous SNV 0.276 0 24 hm5C_associated_SNPs_97893 0 0 0 0 2 TEX45 chr19:7569197 3'AG 7569197 Downstream 85bp
chr19 7569281 7569281 1 + G A SKCM 7569278 + 7569258 7569298 41 AGAAACAGGCCTACAGGCCCCAGGATCTGCCTGAAGATAGG AGAAACAGGCCTACAGGCCCCAGAATCTGCCTGAAGATAGG < 41bp 0.819225147181388 0.617965706375419 0.36812323 0.04810959 prediction 0.402518881611938 Functional Loss - TEX45 ENSG00000198723 CDS Human protein_coding chr19:7569278 chr19:7569281 nonsynonymous SNV 0.276 0 24 hm5C_associated_SNPs_97893 0 0 0 0 2 TEX45 chr19:7569297 5'GT 7569297 Upstream 17bp
chr11 1862698 1862698 1 + C T UCEC 1862695 + 1862675 1862715 41 CTCCTCCACAGGAGCGGGACCTGCGAGACGTGGGTGACTGG CTCCTCCACAGGAGCGGGACCTGTGAGACGTGGGTGACTGG < 41bp 0.70125588666699 0.479901487446811 0.3936229 0.31901208 prediction 0.40251177333398 Functional Loss - TNNI2 ENSG00000130598 CDS Human protein_coding chr11:1862695 chr11:1862698 stopgain 0.992 1 24 hm5C_associated_SNPs_97894 6 0 0 0 1 TNNI2 chr11:1862686 3'AG 1862686 Downstream 13bp
chr22 46724721 46724721 1 + A C KIRP 46724717 + 46724697 46724737 41 GAGGAAAGCGATTCTACTTTCTCCAAAAGTACTGCCACAGA GAGGAAAGCGATTCTACTTTCTCCCAAAGTACTGCCACAGA < 41bp 0.701253786412447 0.262109552967919 0.9681549 0.0796265 prediction 0.402507572824893 Functional Loss - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46724717 chr22:46724721 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_97897 0 0 1 0 1 GTSE1 chr22:46724786 5'GT 46724786 Upstream 66bp
chr19 45411139 45411139 1 + C T STAD 45411136 + 45411116 45411156 41 TGGGTCGCTTTTGGGATTACCTGCGCTGGGTGCAGACACTG TGGGTCGCTTTTGGGATTACCTGTGCTGGGTGCAGACACTG < 41bp 0.747132234638792 0.545879122539555 0.8967807 0.78251797 prediction 0.402506224198473 Functional Loss - APOE ENSG00000130203 CDS Human protein_coding chr19:45411136 chr19:45411139 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_97898 0 0 1 0 1 APOE chr19:45411209 5'GT 45411209 Upstream 71bp
chr1 40954867 40954867 1 + C T STAD 40954864 + 40954844 40954884 41 CGAGAGGTGATGCTGGAGAACTACAGCAACTTGGTGTCAGT CGAGAGGTGATGCTGGAGAACTATAGCAACTTGGTGTCAGT < 41bp 0.793167243728871 0.591916568024893 0.92354536 0.55326617 prediction 0.402501351407958 Functional Loss - ZFP69 ENSG00000187815 CDS Human protein_coding chr1:40954864 chr1:40954867 synonymous SNV . 0 24 hm5C_associated_SNPs_97900 0 0 1 0 1 ZFP69 chr1:40954886 5'GT 40954886 Upstream 20bp
chr9 34658544 34658544 1 + G T LUSC 34658540 + 34658520 34658560 41 GCCCTGACCCACCCCAGGGCCTGCGGGTAGAGTCAGTACCA GCCCTGACCCACCCCAGGGCCTGCTGGTAGAGTCAGTACCA < 41bp 0.721668649557342 0.520423846572656 0.13116887 0.10006234 prediction 0.402489605969371 Functional Loss - IL11RA ENSG00000137070 CDS Human protein_coding chr9:34658540 chr9:34658544 nonsynonymous SNV 0.830 0 25 hm5C_associated_SNPs_97905 0 0 0 2 1 IL11RA chr9:34658517 3'AG 34658517 Downstream 28bp
chr19 12221207 12221207 1 + G T UCEC 12221204 + 12221184 12221224 41 CTTCCCAAAAGAATCTCTACCGAGAAGTGATGCAAGAAACC CTTCCCAAAAGAATCTCTACCGATAAGTGATGCAAGAAACC < 41bp 0.701241522807881 0.333876988134943 0.7779191 0.28123224 prediction 0.402483045615762 Functional Loss - ZNF788 ENSG00000214189 CDS Human protein_coding chr19:12221204 chr19:12221207 stopgain 0.593 0 24 hm5C_associated_SNPs_97907 0 0 0 0 2 ZNF788 chr19:12221120 3'AG 12221120 Downstream 88bp
chr19 12221207 12221207 1 + G T UCEC 12221204 + 12221184 12221224 41 CTTCCCAAAAGAATCTCTACCGAGAAGTGATGCAAGAAACC CTTCCCAAAAGAATCTCTACCGATAAGTGATGCAAGAAACC < 41bp 0.701241522807881 0.333876988134943 0.7779191 0.28123224 prediction 0.402483045615762 Functional Loss - ZNF788 ENSG00000214189 CDS Human protein_coding chr19:12221204 chr19:12221207 stopgain 0.593 0 24 hm5C_associated_SNPs_97907 0 0 0 0 2 ZNF788 chr19:12221246 5'GT 12221246 Upstream 40bp
chr11 66189940 66189940 1 + G T UCEC 66189936 + 66189916 66189956 41 CTCCAGGTGGACCTGGTTGCCCAGGGTGACAGCATCTACGA CTCCAGGTGGACCTGGTTGCCCAGTGTGACAGCATCTACGA < 41bp 0.738727080163297 0.537486743707677 0.30524993 0.13868672 prediction 0.40248067291124 Functional Loss - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66189936 chr11:66189940 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_97909 0 0 0 0 2 NPAS4 chr11:66189922 3'AG 66189922 Downstream 19bp
chr11 66189940 66189940 1 + G T UCEC 66189936 + 66189916 66189956 41 CTCCAGGTGGACCTGGTTGCCCAGGGTGACAGCATCTACGA CTCCAGGTGGACCTGGTTGCCCAGTGTGACAGCATCTACGA < 41bp 0.738727080163297 0.537486743707677 0.30524993 0.13868672 prediction 0.40248067291124 Functional Loss - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66189936 chr11:66189940 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_97909 0 0 0 0 2 NPAS4 chr11:66190024 5'GT 66190024 Upstream 85bp
chr8 121463542 121463542 1 + G A STAD 121463539 + 121463519 121463559 41 GAAGAAGAAGACAGTAATAGCAGGGAATCATTATCCTTGGC GAAGAAGAAGACAGTAATAGCAGAGAATCATTATCCTTGGC < 41bp 0.804059713181605 0.602821236665744 0.90887976 0.86850035 prediction 0.402476953031721 Functional Loss - MTBP ENSG00000172167 CDS Human protein_coding chr8:121463539 chr8:121463542 synonymous SNV . 0 24 hm5C_associated_SNPs_97910 0 0 1 0 1 MTBP chr8:121463562 5'GT 121463562 Upstream 21bp
chr19 49674941 49674941 1 + G A LUSC 49674938 + 49674918 49674958 41 CCTGGAAGACACTCTGGCCCCAGGGAGTGGGGGAGCCAGGC CCTGGAAGACACTCTGGCCCCAGAGAGTGGGGGAGCCAGGC < 41bp 0.8227286901127 0.621491229528356 0.876529 0.45495898 prediction 0.402474921168687 Functional Loss - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49674938 chr19:49674941 nonsynonymous SNV 0.887 1 24 hm5C_associated_SNPs_97913 0 0 1 0 1 TRPM4 chr19:49675026 5'GT 49675026 Upstream 86bp
chr14 22962920 22962920 1 + G A UCEC 22962917 + 22962897 22962937 41 GTTGGCCCAGAGTGTGTATTCAGGAGGAGGTGCTGACGGAC GTTGGCCCAGAGTGTGTATTCAGAAGGAGGTGCTGACGGAC < 41bp 0.797767430703456 0.596530330410416 0.7512331 0.49098364 prediction 0.402474200586081 Functional Loss - OR4E1;LINC02332 ENSG00000211844 CDS Human TR_J_gene chr14:22962917 chr14:22962920 unknown . 0 24 hm5C_associated_SNPs_97914 0 0 0 0 1 OR4E1;LINC02332 chr14:22962920 3'AG 22962920 Downstream 1bp
chr6 32007234 32007234 1 + G T UCEC 32007231 + 32007211 32007251 41 CTCACCTTCGGAGACAAGATCAAGGTGCCTCACAGCCCCTC CTCACCTTCGGAGACAAGATCAATGTGCCTCACAGCCCCTC < 41bp 0.70123575281711 0.35011865916123 0.9225874 0.33381778 prediction 0.40247150563422 Functional Loss - CYP21A2 ENSG00000231852 CDS Human protein_coding chr6:32007231 chr6:32007234 nonsynonymous SNV 0.891 0 24 hm5C_associated_SNPs_97917 0 0 0 0 1 CYP21A2 chr6:32007234 5'GT 32007234 Upstream 1bp
chr18 48255600 48255600 1 + C T PAAD 48255598 + 48255578 48255618 41 AGGACGCCAGCGAGGTACAGCGCGACCCGCGCGCGGGTTCG AGGACGCCAGCGAGGTACAGCGTGACCCGCGCGCGGGTTCG < 41bp 0.850824178813254 0.649593630788501 0.46660572 0.40174246 prediction 0.402461096049507 Functional Loss - MAPK4 ENSG00000141639 CDS Human protein_coding chr18:48255598 chr18:48255600 synonymous SNV . 0 23 hm5C_associated_SNPs_97918 0 0 0 0 1 MAPK4 chr18:48255528 3'AG 48255528 Downstream 73bp
chr10 105203743 105203743 1 + C T PRAD 105203740 + 105203720 105203760 41 AAAGCTGTGTGGATCAAATACGGCGCCTTCCTTCTGCGGAG AAAGCTGTGTGGATCAAATACGGTGCCTTCCTTCTGCGGAG < 41bp 0.731492309239972 0.53026243763413 0.8533994 0.8015897 prediction 0.402459743211684 Functional Loss - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105203740 chr10:105203743 synonymous SNV . 0 24 hm5C_associated_SNPs_97919 0 0 1 0 1 PDCD11 chr10:105203672 3'AG 105203672 Downstream 72bp
chr10 696265 696265 1 + C T rs184617249 696263 + 696243 696283 41 TGGTGCCCGGGGCTGTGGACCACGCCAGCCCACAGCCACTG TGGTGCCCGGGGCTGTGGACCATGCCAGCCCACAGCCACTG < 41bp 0.70122817739292 0.455986998479964 0.35048497 0.26609874 prediction 0.40245635478584 Functional Loss - PRR26 ENSG00000180525 CDS Human protein_coding chr10:696263 chr10:696265 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_97920 0 0 0 0 1 PRR26 chr10:696231 3'AG 696231 Downstream 35bp
chr1 26881142 26881142 1 + C T SKCM 26881139 + 26881119 26881159 41 GAGAAGAAGGCCTATTCTTTCTGCGGGACAGTGGAGTACAT GAGAAGAAGGCCTATTCTTTCTGTGGGACAGTGGAGTACAT < 41bp 0.79033397931661 0.589111562875691 0.29475328 0.30348933 prediction 0.402444832881838 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26881139 chr1:26881142 synonymous SNV . 0 24 hm5C_associated_SNPs_97924 0 0 1 0 2 RPS6KA1 chr1:26881087 3'AG 26881087 Downstream 56bp
chr1 26881142 26881142 1 + C T SKCM 26881139 + 26881119 26881159 41 GAGAAGAAGGCCTATTCTTTCTGCGGGACAGTGGAGTACAT GAGAAGAAGGCCTATTCTTTCTGTGGGACAGTGGAGTACAT < 41bp 0.79033397931661 0.589111562875691 0.29475328 0.30348933 prediction 0.402444832881838 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26881139 chr1:26881142 synonymous SNV . 0 24 hm5C_associated_SNPs_97924 0 0 1 0 2 RPS6KA1 chr1:26881229 5'GT 26881229 Upstream 88bp
chr19 55997079 55997079 1 + G C UCEC 55997075 + 55997055 55997095 41 GGCCGGGGCCTGGGGGTTGCCATGGCCCCCAGCCACCTGTC GGCCGGGGCCTGGGGGTTGCCATGCCCCCCAGCCACCTGTC < 41bp 0.74391575067861 0.542693565419161 0.79357636 0.35527736 prediction 0.402444370518899 Functional Loss - NAT14 ENSG00000090971 CDS Human protein_coding chr19:55997075 chr19:55997079 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_97925 0 0 1 0 2 NAT14 chr19:55997028 3'AG 55997028 Downstream 52bp
chr19 55997079 55997079 1 + G C UCEC 55997075 + 55997055 55997095 41 GGCCGGGGCCTGGGGGTTGCCATGGCCCCCAGCCACCTGTC GGCCGGGGCCTGGGGGTTGCCATGCCCCCCAGCCACCTGTC < 41bp 0.74391575067861 0.542693565419161 0.79357636 0.35527736 prediction 0.402444370518899 Functional Loss - NAT14 ENSG00000090971 CDS Human protein_coding chr19:55997075 chr19:55997079 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_97925 0 0 1 0 2 NAT14 chr19:55997147 5'GT 55997147 Upstream 69bp
chr2 220368861 220368861 1 + C T STAD 220368858 + 220368838 220368878 41 ATCAGTGACATCATCAACTGCGGCATCTACCTCTTTTCTCC ATCAGTGACATCATCAACTGCGGTATCTACCTCTTTTCTCC < 41bp 0.762497929463465 0.561283179568717 0.2770229 0.1994375 prediction 0.402429499789495 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220368858 chr2:220368861 synonymous SNV . 0 24 hm5C_associated_SNPs_97930 0 0 1 9 2 GMPPA chr2:220368805 3'AG 220368805 Downstream 57bp
chr2 220368861 220368861 1 + C T STAD 220368858 + 220368838 220368878 41 ATCAGTGACATCATCAACTGCGGCATCTACCTCTTTTCTCC ATCAGTGACATCATCAACTGCGGTATCTACCTCTTTTCTCC < 41bp 0.762497929463465 0.561283179568717 0.2770229 0.1994375 prediction 0.402429499789495 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220368858 chr2:220368861 synonymous SNV . 0 24 hm5C_associated_SNPs_97930 0 0 1 9 2 GMPPA chr2:220368935 5'GT 220368935 Upstream 75bp
chr16 2011630 2011630 1 + G A SKCM 2011627 + 2011607 2011647 41 ACCCAGGTGGCCAAGGCCTACCAGGACCGCTGTGCGTGCCC ACCCAGGTGGCCAAGGCCTACCAAGACCGCTGTGCGTGCCC < 41bp 0.701213017035649 0.457160935725932 0.24192452 0.1187579 prediction 0.402426034071298 Functional Loss - NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011627 chr16:2011630 synonymous SNV . 0 24 hm5C_associated_SNPs_97931 0 0 1 0 1 NDUFB10 chr16:2011637 5'GT 2011637 Upstream 8bp
chr19 50905074 50905074 1 + G A rs1726801 50905071 + 50905051 50905091 41 GCCTGGGGGGCCCCCACCATCCCGCGGCTCCGTGCCTGTGC GCCTGGGGGGCCCCCACCATCCCACGGCTCCGTGCCTGTGC < 41bp 0.701210159564602 0.441305558595022 0.31475613 0.07124466 prediction 0.402420319129204 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905071 chr19:50905074 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_97934 1 0 1 0 1 POLD1 chr19:50905035 3'AG 50905035 Downstream 40bp
chr19 50905073 50905073 1 + C T HNSC 50905071 + 50905051 50905091 41 GCCTGGGGGGCCCCCACCATCCCGCGGCTCCGTGCCTGTGC GCCTGGGGGGCCCCCACCATCCTGCGGCTCCGTGCCTGTGC < 41bp 0.701210159564602 0.450679054059913 0.31475613 0.049554646 prediction 0.402420319129204 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905071 chr19:50905073 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_97935 2 0 1 0 1 POLD1 chr19:50905035 3'AG 50905035 Downstream 39bp
chr6 44274746 44274746 1 - G A BRCA 44274749 - 44274729 44274769 41 GGCTGGTTCTTCGTCGGATCCTGCGTCGAGCTGTGCGTTTC GGCTGGTTCTTCGTCGGATCCTGTGTCGAGCTGTGCGTTTC < 41bp 0.784100894128547 0.582891384146392 0.24271336 0.1464661 prediction 0.402419019964309 Functional Loss - AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human protein_coding chr6:44274749 chr6:44274746 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_97937 0 0 1 0 2 AARS2 chr6:44274660 5'GT 44274660 Upstream 87bp
chr6 44274746 44274746 1 - G A BRCA 44274749 - 44274729 44274769 41 GGCTGGTTCTTCGTCGGATCCTGCGTCGAGCTGTGCGTTTC GGCTGGTTCTTCGTCGGATCCTGTGTCGAGCTGTGCGTTTC < 41bp 0.784100894128547 0.582891384146392 0.24271336 0.1464661 prediction 0.402419019964309 Functional Loss - AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human other chr6:44274749 chr6:44274746 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_97937 0 0 1 0 2 AARS2 chr6:44274768 3'AG 44274768 Downstream 23bp
chr5 179250884 179250884 1 + C T rs139372286 179250881 + 179250861 179250901 41 AAAAAGAGTGCCGGCGGGACCACCGCCCACCGTGTGCTCAG AAAAAGAGTGCCGGCGGGACCACTGCCCACCGTGTGCTCAG < 41bp 0.777904444394564 0.576699824141085 0.26425484 0.16301405 prediction 0.402409240506958 Functional Loss - SQSTM1 ENSG00000161011 CDS Human protein_coding chr5:179250881 chr5:179250884 nonsynonymous SNV 0.904 4 24 hm5C_associated_SNPs_97939 0 0 1 0 1 SQSTM1 chr5:179250858 3'AG 179250858 Downstream 27bp
chr12 64174904 64174904 1 + C T rs73122634 64174902 + 64174882 64174922 41 CTTCAAATATTAGATAAATCCACGAAAGGAAAAACAGATCT CTTCAAATATTAGATAAATCCATGAAAGGAAAAACAGATCT < 41bp 0.84502256938868 0.643823073438946 0.09697899 0.09557018 prediction 0.402398991899468 Functional Loss - TMEM5 ENSG00000118600 CDS Human protein_coding chr12:64174902 chr12:64174904 nonsynonymous SNV 0.991 0 23 hm5C_associated_SNPs_97940 2 0 0 0 1 TMEM5 chr12:64174954 5'GT 64174954 Upstream 51bp
chr19 52934741 52934741 1 + A C rs118147154 52934740 + 52934720 52934760 41 AGTCAGGAATGGCCCTTACTCAGGTAAGGTAATGTTCTCAG AGTCAGGAATGGCCCTTACTCCGGTAAGGTAATGTTCTCAG < 41bp 0.839370619931035 0.638173514979727 0.8854408 0.524455 prediction 0.402394209902617 Functional Loss - ZNF534 ENSG00000198633 CDS Human protein_coding chr19:52934740 chr19:52934741 nonsynonymous SNV 0.006 3 22 hm5C_associated_SNPs_97942 0 0 0 0 1 ZNF534 chr19:52934742 5'GT 52934742 Upstream 2bp
chr5 135394834 135394834 1 + G T HNSC 135394832 + 135394812 135394852 41 ACCACATTGGTGATGAAATCCTGGTTAGCGGAGGCATCGGG ACCACATTGGTGATGAAATCCTTGTTAGCGGAGGCATCGGG < 41bp 0.701195342693315 0.349910170916943 0.359285 0.08907947 prediction 0.402390685386631 Functional Loss - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135394832 chr5:135394834 synonymous SNV . 0 23 hm5C_associated_SNPs_97943 0 0 1 0 2 TGFBI chr5:135394779 3'AG 135394779 Downstream 56bp
chr5 135394834 135394834 1 + G T HNSC 135394832 + 135394812 135394852 41 ACCACATTGGTGATGAAATCCTGGTTAGCGGAGGCATCGGG ACCACATTGGTGATGAAATCCTTGTTAGCGGAGGCATCGGG < 41bp 0.701195342693315 0.349910170916943 0.359285 0.08907947 prediction 0.402390685386631 Functional Loss - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135394832 chr5:135394834 synonymous SNV . 0 23 hm5C_associated_SNPs_97943 0 0 1 0 2 TGFBI chr5:135394903 5'GT 135394903 Upstream 70bp
chr9 71152371 71152371 1 - T A HNSC 71152375 - 71152355 71152395 41 CTCCAGCTTATGAAGAGAGCCTTGAGGTGGAAAAGCAGAGC CTCCAGCTTATGAAGAGAGCCTTGTGGTGGAAAAGCAGAGC < 41bp 0.701194920212704 0.374973316964177 0.18957862 0.1631391 prediction 0.402389840425408 Functional Loss - TMEM252 ENSG00000181778 CDS Human protein_coding chr9:71152375 chr9:71152371 nonsynonymous SNV 0.056 1 25 hm5C_associated_SNPs_97945 0 0 0 0 1 TMEM252 chr9:71152409 3'AG 71152409 Downstream 39bp
chr8 1645323 1645323 1 + C T CESC 1645321 + 1645301 1645341 41 GTGTGTCCCCAGGACCCCAGCGCCATGCCGAGGCCGACGTC GTGTGTCCCCAGGACCCCAGCGTCATGCCGAGGCCGACGTC < 41bp 0.701190435990776 0.408881342027234 0.58338135 0.37150466 prediction 0.402380871981553 Functional Loss - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1645321 chr8:1645323 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_97948 0 0 0 0 1 DLGAP2 chr8:1645313 3'AG 1645313 Downstream 11bp
chr21 35172208 35172208 1 + C T UCEC 35172206 + 35172186 35172226 41 TCCAGAAGCCATGATGAAATCACTATCCAGCCAGGAGACAT TCCAGAAGCCATGATGAAATCATTATCCAGCCAGGAGACAT < 41bp 0.701187169202079 0.451628135744616 0.024813533 0.038318545 prediction 0.402374338404158 Functional Loss - ITSN1 ENSG00000205726 CDS Human protein_coding chr21:35172206 chr21:35172208 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_97949 0 0 1 0 2 ITSN1 chr21:35172112 3'AG 35172112 Downstream 97bp
chr21 35172208 35172208 1 + C T UCEC 35172206 + 35172186 35172226 41 TCCAGAAGCCATGATGAAATCACTATCCAGCCAGGAGACAT TCCAGAAGCCATGATGAAATCATTATCCAGCCAGGAGACAT < 41bp 0.701187169202079 0.451628135744616 0.024813533 0.038318545 prediction 0.402374338404158 Functional Loss - ITSN1 ENSG00000205726 CDS Human protein_coding chr21:35172206 chr21:35172208 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_97949 0 0 1 0 2 ITSN1 chr21:35172233 5'GT 35172233 Upstream 26bp
chr6 33656066 33656066 1 + C T LUSC 33656063 + 33656043 33656083 41 CAGATCGTGTTCCCAGTGCCCGGCATCTGCCAGTTCCTGAC CAGATCGTGTTCCCAGTGCCCGGTATCTGCCAGTTCCTGAC < 41bp 0.701637677819609 0.500455375414083 0.42495632 0.38164634 prediction 0.402364604811051 Functional Loss - ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33656063 chr6:33656066 synonymous SNV . 0 24 hm5C_associated_SNPs_97953 0 0 1 0 1 ITPR3 chr6:33656016 3'AG 33656016 Downstream 51bp
chr19 36166864 36166864 1 + C T SKCM 36166861 + 36166841 36166881 41 TGCTGTCGCCGGACGGGAAACTTCATCCCCCTCAACGAGGA TGCTGTCGCCGGACGGGAAACTTTATCCCCCTCAACGAGGA < 41bp 0.780472312559204 0.579291082473019 0.24001184 0.1798734 prediction 0.40236246017237 Functional Loss - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36166861 chr19:36166864 synonymous SNV . 0 24 hm5C_associated_SNPs_97954 0 0 0 0 1 UPK1A chr19:36166921 5'GT 36166921 Upstream 58bp
chr12 97114306 97114306 1 + G A SKCM 97114303 + 97114283 97114323 41 TGGTGGAGGCCCGGCTTCAGCTGGCTGCAGTTGCTCTGCAG TGGTGGAGGCCCGGCTTCAGCTGACTGCAGTTGCTCTGCAG < 41bp 0.833651415462075 0.632472188893316 0.86934865 0.73400545 prediction 0.40235845313752 Functional Loss - CFAP54 ENSG00000188596 CDS Human protein_coding chr12:97114303 chr12:97114306 nonsynonymous SNV 0.965 4 24 hm5C_associated_SNPs_97957 0 0 0 0 1 CFAP54 chr12:97114343 5'GT 97114343 Upstream 38bp
chr5 137520619 137520619 1 + C T PRAD 137520616 + 137520596 137520636 41 AGATGGTAGAACAGATGCAACAGCGGGAACAGTGGTGCAGG AGATGGTAGAACAGATGCAACAGTGGGAACAGTGGTGCAGG < 41bp 0.701177417960356 0.478327211673833 0.8583075 0.7723256 prediction 0.402354835920713 Functional Loss - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137520616 chr5:137520619 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_97960 0 0 1 0 1 KIF20A chr5:137520635 5'GT 137520635 Upstream 17bp
chr8 118541020 118541020 1 + G T LUAD 118541018 + 118540998 118541038 41 TATGACAAATGCAATGAAAACTGTGGTGGGATGGATCCCAT TATGACAAATGCAATGAAAACTTTGGTGGGATGGATCCCAT < 41bp 0.701172676272544 0.371212599163673 0.046549886 0.032167852 prediction 0.402345352545088 Functional Loss - MED30 ENSG00000164758 CDS Human protein_coding chr8:118541018 chr8:118541020 nonsynonymous SNV 0.930 3 23 hm5C_associated_SNPs_97961 0 0 0 0 1 MED30 chr8:118541048 5'GT 118541048 Upstream 29bp
chr2 71365756 71365756 1 + G T LUSC 71365754 + 71365734 71365774 41 CTACACTTTGACCATGCTGTCCGGATGGGTATGGTGCCCTC CTACACTTTGACCATGCTGTCCTGATGGGTATGGTGCCCTC < 41bp 0.91714958479693 0.715978213075767 0.3891137 0.14631215 prediction 0.402342743442325 Functional Loss - MPHOSPH10 ENSG00000124383 CDS Human protein_coding chr2:71365754 chr2:71365756 nonsynonymous SNV 0.062 4 23 hm5C_associated_SNPs_97963 0 0 1 0 1 MPHOSPH10 chr2:71365761 5'GT 71365761 Upstream 6bp
chr11 71640071 71640071 1 + T C rs61537950 71640070 + 71640050 71640090 41 TGAGCAGCGGAAGCAGCTGGCTCGCGCGGGGACTGCGGTGA TGAGCAGCGGAAGCAGCTGGCCCGCGCGGGGACTGCGGTGA < 41bp 0.733833635554135 0.532664464720129 0.20698673 0.18469918 prediction 0.402338341668012 Functional Loss - RNF121 ENSG00000137522 UTR5 Human protein_coding chr11:71640070 chr11:71640071 . . 0 22 hm5C_associated_SNPs_97965 0 0 0 0 1 RNF121 chr11:71640170 5'GT 71640170 Upstream 100bp
chr11 134239727 134239727 1 + C T rs141685163 134239724 + 134239704 134239744 41 GATGCTGTGCTGACAGAAGCCGGCGATTACACGGCCAAGTA GATGCTGTGCTGACAGAAGCCGGTGATTACACGGCCAAGTA < 41bp 0.753069967810159 0.551900822302284 0.8829781 0.90272105 prediction 0.402338291015751 Functional Loss - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134239724 chr11:134239727 synonymous SNV . 0 24 hm5C_associated_SNPs_97966 0 0 0 0 2 GLB1L2 chr11:134239699 3'AG 134239699 Downstream 29bp
chr11 134239727 134239727 1 + C T rs141685163 134239724 + 134239704 134239744 41 GATGCTGTGCTGACAGAAGCCGGCGATTACACGGCCAAGTA GATGCTGTGCTGACAGAAGCCGGTGATTACACGGCCAAGTA < 41bp 0.753069967810159 0.551900822302284 0.8829781 0.90272105 prediction 0.402338291015751 Functional Loss - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134239724 chr11:134239727 synonymous SNV . 0 24 hm5C_associated_SNPs_97966 0 0 0 0 2 GLB1L2 chr11:134239779 5'GT 134239779 Upstream 53bp
chr3 170141045 170141045 1 + G A UCEC 170141042 + 170141022 170141062 41 CTGACTGTTCTTCCCTGCATCCGGATGGGCCAGGAGCCCGG CTGACTGTTCTTCCCTGCATCCGAATGGGCCAGGAGCCCGG < 41bp 0.822612159234235 0.621445172687165 0.7515207 0.39812282 prediction 0.402333973094139 Functional Loss - CLDN11 ENSG00000013297 CDS Human protein_coding chr3:170141042 chr3:170141045 synonymous SNV . 0 24 hm5C_associated_SNPs_97968 0 0 1 0 2 CLDN11 chr3:170140951 3'AG 170140951 Downstream 95bp
chr3 170141045 170141045 1 + G A UCEC 170141042 + 170141022 170141062 41 CTGACTGTTCTTCCCTGCATCCGGATGGGCCAGGAGCCCGG CTGACTGTTCTTCCCTGCATCCGAATGGGCCAGGAGCCCGG < 41bp 0.822612159234235 0.621445172687165 0.7515207 0.39812282 prediction 0.402333973094139 Functional Loss - CLDN11 ENSG00000013297 CDS Human protein_coding chr3:170141042 chr3:170141045 synonymous SNV . 0 24 hm5C_associated_SNPs_97968 0 0 1 0 2 CLDN11 chr3:170141115 5'GT 170141115 Upstream 71bp
chr20 33511177 33511177 1 + G A COAD 33511174 + 33511154 33511194 41 TGCGCACAGTCTATGGGAACCACGAACGCTTTGAGACAACC TGCGCACAGTCTATGGGAACCACAAACGCTTTGAGACAACC < 41bp 0.701166606477327 0.466555625491453 0.23126116 0.27059144 prediction 0.402333212954654 Functional Loss - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33511174 chr20:33511177 nonsynonymous SNV 0.935 0 24 hm5C_associated_SNPs_97969 0 0 1 0 2 ACSS2 chr20:33511126 3'AG 33511126 Downstream 52bp
chr20 33511177 33511177 1 + G A COAD 33511174 + 33511154 33511194 41 TGCGCACAGTCTATGGGAACCACGAACGCTTTGAGACAACC TGCGCACAGTCTATGGGAACCACAAACGCTTTGAGACAACC < 41bp 0.701166606477327 0.466555625491453 0.23126116 0.27059144 prediction 0.402333212954654 Functional Loss - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33511174 chr20:33511177 nonsynonymous SNV 0.935 0 24 hm5C_associated_SNPs_97969 0 0 1 0 2 ACSS2 chr20:33511234 5'GT 33511234 Upstream 58bp
chr20 33511176 33511176 1 + C T OV 33511174 + 33511154 33511194 41 TGCGCACAGTCTATGGGAACCACGAACGCTTTGAGACAACC TGCGCACAGTCTATGGGAACCATGAACGCTTTGAGACAACC < 41bp 0.701166606477327 0.400131034936844 0.23126116 0.26445812 prediction 0.402333212954654 Functional Loss - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33511174 chr20:33511176 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_97970 0 0 1 0 2 ACSS2 chr20:33511126 3'AG 33511126 Downstream 51bp
chr20 33511176 33511176 1 + C T OV 33511174 + 33511154 33511194 41 TGCGCACAGTCTATGGGAACCACGAACGCTTTGAGACAACC TGCGCACAGTCTATGGGAACCATGAACGCTTTGAGACAACC < 41bp 0.701166606477327 0.400131034936844 0.23126116 0.26445812 prediction 0.402333212954654 Functional Loss - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33511174 chr20:33511176 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_97970 0 0 1 0 2 ACSS2 chr20:33511234 5'GT 33511234 Upstream 59bp
chr16 55690819 55690819 1 + C T SKCM 55690816 + 55690796 55690836 41 GACTTCCTGCTGTCCGTAGTCGGCTTCGCAGTGGACCTGGC GACTTCCTGCTGTCCGTAGTCGGTTTCGCAGTGGACCTGGC < 41bp 0.746100968981974 0.544938296430808 0.8634682 0.68920416 prediction 0.402325345102333 Functional Loss - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55690816 chr16:55690819 synonymous SNV . 0 24 hm5C_associated_SNPs_97976 0 0 0 0 1 SLC6A2 chr16:55690880 5'GT 55690880 Upstream 62bp
chr3 160138558 160138558 1 + G C BLCA 160138557 + 160138537 160138577 41 GGAGCCATTGATGAAAAATACGACGTGGCTATATCATCCTG GGAGCCATTGATGAAAAATACCACGTGGCTATATCATCCTG < 41bp 0.701160754527584 0.3916317982558 0.08531541 0.037138015 prediction 0.402321509055168 Functional Loss - SMC4 ENSG00000113810 CDS Human protein_coding chr3:160138557 chr3:160138558 nonsynonymous SNV 0.634 5 22 hm5C_associated_SNPs_97980 0 0 1 0 1 SMC4 chr3:160138528 3'AG 160138528 Downstream 31bp
chr3 160138560 160138560 1 + C T STAD 160138557 + 160138537 160138577 41 GGAGCCATTGATGAAAAATACGACGTGGCTATATCATCCTG GGAGCCATTGATGAAAAATACGATGTGGCTATATCATCCTG < 41bp 0.701160754527584 0.481583750162404 0.08531541 0.03469014 prediction 0.402321509055168 Functional Loss - SMC4 ENSG00000113810 CDS Human protein_coding chr3:160138557 chr3:160138560 synonymous SNV . 0 24 hm5C_associated_SNPs_97981 0 0 1 0 1 SMC4 chr3:160138528 3'AG 160138528 Downstream 33bp
chr1 228334627 228334627 1 + T C COAD 228334626 + 228334606 228334646 41 ATGCCGAGTTCTCGGGGAACCTGTATGGCACGAGGTGGGCC ATGCCGAGTTCTCGGGGAACCCGTATGGCACGAGGTGGGCC < 41bp 0.829255028103338 0.628095782765484 0.40845215 0.28767014 prediction 0.402318490675708 Functional Loss - GUK1 ENSG00000143774 CDS Human protein_coding chr1:228334626 chr1:228334627 nonsynonymous SNV 0.925 4 22 hm5C_associated_SNPs_97982 0 0 1 0 2 GUK1 chr1:228334543 3'AG 228334543 Downstream 85bp
chr1 228334627 228334627 1 + T C COAD 228334626 + 228334606 228334646 41 ATGCCGAGTTCTCGGGGAACCTGTATGGCACGAGGTGGGCC ATGCCGAGTTCTCGGGGAACCCGTATGGCACGAGGTGGGCC < 41bp 0.829255028103338 0.628095782765484 0.40845215 0.28767014 prediction 0.402318490675708 Functional Loss - GUK1 ENSG00000143774 CDS Human protein_coding chr1:228334626 chr1:228334627 nonsynonymous SNV 0.925 4 22 hm5C_associated_SNPs_97982 0 0 1 0 2 GUK1 chr1:228334639 5'GT 228334639 Upstream 13bp
chr1 171080001 171080001 1 + T C LAML 171080000 + 171079980 171080020 41 GGTCTGGGACAATGGTTATCCTTGGGACATGCTGCTCGTCA GGTCTGGGACAATGGTTATCCCTGGGACATGCTGCTCGTCA < 41bp 0.701158599568958 0.457077134922747 0.018541783 0.017979324 prediction 0.402317199137917 Functional Loss - FMO3 ENSG00000007933 CDS Human protein_coding chr1:171080000 chr1:171080001 synonymous SNV . 0 22 hm5C_associated_SNPs_97983 0 0 0 0 1 FMO3 chr1:171079939 3'AG 171079939 Downstream 63bp
chr16 77859228 77859228 1 + C T UCS 77859226 + 77859206 77859246 41 GTGGAGTTTGTCTACAAGATCCCGGATGACATGAGCTTCTC GTGGAGTTTGTCTACAAGATCCTGGATGACATGAGCTTCTC < 41bp 0.701157749977788 0.413093742800732 0.374187 0.36235863 prediction 0.402315499955575 Functional Loss - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77859226 chr16:77859228 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_97985 0 0 0 0 1 VAT1L chr16:77859143 3'AG 77859143 Downstream 86bp
chr11 92714683 92714683 1 + C T UCEC 92714681 + 92714661 92714701 41 TCTACCCCTACCCGCTAATCCTCGTGGCCATCTTCTATGAC TCTACCCCTACCCGCTAATCCTTGTGGCCATCTTCTATGAC < 41bp 0.701157377623426 0.427870428799523 0.852057 0.7338925 prediction 0.402314755246852 Functional Loss - MTNR1B ENSG00000134640 CDS Human protein_coding chr11:92714681 chr11:92714683 synonymous SNV . 0 23 hm5C_associated_SNPs_97986 0 0 0 0 1 MTNR1B chr11:92714613 3'AG 92714613 Downstream 71bp
chr10 116032548 116032548 1 + G T UCEC 116032544 + 116032524 116032564 41 GCTCTGAAATACCTTCTGCACAGAGGGTTGCCTGGAGGCAG GCTCTGAAATACCTTCTGCACAGATGGTTGCCTGGAGGCAG < 41bp 0.756499198704465 0.55534467097944 0.84745425 0.3307652 prediction 0.40230905545005 Functional Loss - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116032544 chr10:116032548 nonsynonymous SNV 0.977 5 25 hm5C_associated_SNPs_97989 0 0 0 0 1 VWA2 chr10:116032499 3'AG 116032499 Downstream 50bp
chr7 133164850 133164850 1 + G A UCEC 133164847 + 133164827 133164867 41 TCAGTATGAGCGCCTATCTGCGAGAACAGAGAAGGGAGCTC TCAGTATGAGCGCCTATCTGCGAAAACAGAGAAGGGAGCTC < 41bp 0.751966396504954 0.550812767020742 0.28108287 0.11400902 prediction 0.402307258968424 Functional Loss - EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133164847 chr7:133164850 nonsynonymous SNV 0.987 4 24 hm5C_associated_SNPs_97990 0 0 1 0 2 EXOC4 chr7:133164804 3'AG 133164804 Downstream 47bp
chr7 133164850 133164850 1 + G A UCEC 133164847 + 133164827 133164867 41 TCAGTATGAGCGCCTATCTGCGAGAACAGAGAAGGGAGCTC TCAGTATGAGCGCCTATCTGCGAAAACAGAGAAGGGAGCTC < 41bp 0.751966396504954 0.550812767020742 0.28108287 0.11400902 prediction 0.402307258968424 Functional Loss - EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133164847 chr7:133164850 nonsynonymous SNV 0.987 4 24 hm5C_associated_SNPs_97990 0 0 1 0 2 EXOC4 chr7:133164892 5'GT 133164892 Upstream 43bp
chr4 110763764 110763764 1 + C T rs145995401 110763761 + 110763741 110763781 41 TCCACTGTTTGCAAAATCTTCTACATTCTATAACCCCTGCA TCCACTGTTTGCAAAATCTTCTATATTCTATAACCCCTGCA < 41bp 0.751723367143655 0.550578024258487 0.24269757 0.072292 prediction 0.402290685770337 Functional Loss - RRH ENSG00000180245 CDS Human protein_coding chr4:110763761 chr4:110763764 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_97998 0 0 1 0 1 RRH chr4:110763803 5'GT 110763803 Upstream 40bp
chr21 37716908 37716908 1 + G T UCEC 37716905 + 37716885 37716925 41 CAGTATATTATATCTAAAGCCAAGAATGCAGATCATCCTAC CAGTATATTATATCTAAAGCCAATAATGCAGATCATCCTAC < 41bp 0.70114095119549 0.324227040566815 0.20973685 0.87498784 prediction 0.402281902390981 Functional Loss - MORC3 ENSG00000159256 CDS Human protein_coding chr21:37716905 chr21:37716908 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_98002 0 0 1 0 2 MORC3 chr21:37716877 3'AG 37716877 Downstream 32bp
chr21 37716908 37716908 1 + G T UCEC 37716905 + 37716885 37716925 41 CAGTATATTATATCTAAAGCCAAGAATGCAGATCATCCTAC CAGTATATTATATCTAAAGCCAATAATGCAGATCATCCTAC < 41bp 0.70114095119549 0.324227040566815 0.20973685 0.87498784 prediction 0.402281902390981 Functional Loss - MORC3 ENSG00000159256 CDS Human protein_coding chr21:37716905 chr21:37716908 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_98002 0 0 1 0 2 MORC3 chr21:37717005 5'GT 37717005 Upstream 98bp
chr4 184233578 184233578 1 + C T SKCM 184233575 + 184233555 184233595 41 TCTCCAAGGACGTGTGTCGGCTCCGGGAGCAGAGCCAGAAG TCTCCAAGGACGTGTGTCGGCTCTGGGAGCAGAGCCAGAAG < 41bp 0.798534236186158 0.597393292739408 0.8587153 0.5980029 prediction 0.4022818868935 Functional Loss - WWC2 ENSG00000151718 CDS Human protein_coding chr4:184233575 chr4:184233578 nonsynonymous SNV 0.905 4 24 hm5C_associated_SNPs_98003 0 0 1 0 2 WWC2 chr4:184233494 3'AG 184233494 Downstream 85bp
chr4 184233578 184233578 1 + C T SKCM 184233575 + 184233555 184233595 41 TCTCCAAGGACGTGTGTCGGCTCCGGGAGCAGAGCCAGAAG TCTCCAAGGACGTGTGTCGGCTCTGGGAGCAGAGCCAGAAG < 41bp 0.798534236186158 0.597393292739408 0.8587153 0.5980029 prediction 0.4022818868935 Functional Loss - WWC2 ENSG00000151718 CDS Human protein_coding chr4:184233575 chr4:184233578 nonsynonymous SNV 0.905 4 24 hm5C_associated_SNPs_98003 0 0 1 0 2 WWC2 chr4:184233621 5'GT 184233621 Upstream 44bp
chrX 100093269 100093269 1 + G T ACC 100093266 + 100093246 100093286 41 GTTCTACAACTGACTGCAGACCAGATTGCCATGTTGCCTCC GTTCTACAACTGACTGCAGACCATATTGCCATGTTGCCTCC < 41bp 0.701140109506175 0.313994810107646 0.16624281 0.028590292 prediction 0.402280219012351 Functional Loss - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100093266 chrX:100093269 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_98006 0 0 1 0 2 CSTF2 chrX:100093228 3'AG 100093228 Downstream 42bp
chrX 100093269 100093269 1 + G T ACC 100093266 + 100093246 100093286 41 GTTCTACAACTGACTGCAGACCAGATTGCCATGTTGCCTCC GTTCTACAACTGACTGCAGACCATATTGCCATGTTGCCTCC < 41bp 0.701140109506175 0.313994810107646 0.16624281 0.028590292 prediction 0.402280219012351 Functional Loss - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100093266 chrX:100093269 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_98006 0 0 1 0 2 CSTF2 chrX:100093353 5'GT 100093353 Upstream 85bp
chr3 89498473 89498473 1 + G A SKCM 89498470 + 89498450 89498490 41 TGGAGTTATGGGATTGTTCTCTGGGAGGTGATGTCTTATGG TGGAGTTATGGGATTGTTCTCTGAGAGGTGATGTCTTATGG < 41bp 0.798957831263875 0.597821187852557 0.54271096 0.22650954 prediction 0.402273286822635 Functional Loss - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89498470 chr3:89498473 stopgain 1.000 1 24 hm5C_associated_SNPs_98008 0 0 1 0 2 EPHA3 chr3:89498375 3'AG 89498375 Downstream 99bp
chr3 89498473 89498473 1 + G A SKCM 89498470 + 89498450 89498490 41 TGGAGTTATGGGATTGTTCTCTGGGAGGTGATGTCTTATGG TGGAGTTATGGGATTGTTCTCTGAGAGGTGATGTCTTATGG < 41bp 0.798957831263875 0.597821187852557 0.54271096 0.22650954 prediction 0.402273286822635 Functional Loss - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89498470 chr3:89498473 stopgain 1.000 1 24 hm5C_associated_SNPs_98008 0 0 1 0 2 EPHA3 chr3:89498524 5'GT 89498524 Upstream 52bp
chr17 47218798 47218798 1 + C T UCEC 47218795 + 47218775 47218815 41 CGTCTCAGGAACCTCTTTTCCTACGATGGAATCTGGTGAGA CGTCTCAGGAACCTCTTTTCCTATGATGGAATCTGGTGAGA < 41bp 0.745953100565369 0.544819785836082 0.20114103 0.23123261 prediction 0.402266629458573 Functional Loss - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47218795 chr17:47218798 synonymous SNV . 0 24 hm5C_associated_SNPs_98011 0 0 0 0 1 B4GALNT2 chr17:47218809 5'GT 47218809 Upstream 12bp
chr6 159178378 159178378 1 + A T UCEC 159178376 + 159178356 159178396 41 GTGGGACTTTGAAGACAGCACAACACAGTCCTTCCGCTGGC GTGGGACTTTGAAGACAGCACATCACAGTCCTTCCGCTGGC < 41bp 0.721001563056127 0.519869020632041 0.09139174 0.13186887 prediction 0.402265084848172 Functional Loss - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159178376 chr6:159178378 nonsynonymous SNV 0.056 0 23 hm5C_associated_SNPs_98012 0 0 0 0 1 SYTL3 chr6:159178413 5'GT 159178413 Upstream 36bp
chrX 128880267 128880267 1 + G A LUAD 128880264 + 128880244 128880284 41 GTCTGGACCGACAGTCGCTACTGGACTCAGGCTGAGCGGCA GTCTGGACCGACAGTCGCTACTGAACTCAGGCTGAGCGGCA < 41bp 0.818093929083835 0.616963527157997 0.17433137 0.08474848 prediction 0.402260803851678 Functional Loss - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128880264 chrX:128880267 stopgain 1.000 1 24 hm5C_associated_SNPs_98014 0 0 0 0 2 XPNPEP2 chrX:128880212 3'AG 128880212 Downstream 56bp
chrX 128880267 128880267 1 + G A LUAD 128880264 + 128880244 128880284 41 GTCTGGACCGACAGTCGCTACTGGACTCAGGCTGAGCGGCA GTCTGGACCGACAGTCGCTACTGAACTCAGGCTGAGCGGCA < 41bp 0.818093929083835 0.616963527157997 0.17433137 0.08474848 prediction 0.402260803851678 Functional Loss - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128880264 chrX:128880267 stopgain 1.000 1 24 hm5C_associated_SNPs_98014 0 0 0 0 2 XPNPEP2 chrX:128880316 5'GT 128880316 Upstream 50bp
chr12 6630174 6630174 1 + G A rs139063293 6630171 + 6630151 6630191 41 GAAAGGCCATCATTCTCACTCGAGAAGCCACAGGCCACTTC GAAAGGCCATCATTCTCACTCGAAAAGCCACAGGCCACTTC < 41bp 0.825919659871858 0.624790678371326 0.86164767 0.41869333 prediction 0.402257963001064 Functional Loss - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6630171 chr12:6630174 nonsynonymous SNV 0.851 0 24 hm5C_associated_SNPs_98017 0 0 1 0 1 NCAPD2 chr12:6630152 3'AG 6630152 Downstream 23bp
chr2 65217251 65217251 1 + G A rs374368836 65217248 + 65217228 65217268 41 AGCGACCTGGGGCTGGAGGACTCGGGGCCTCCTCCTGTCCC AGCGACCTGGGGCTGGAGGACTCAGGGCCTCCTCCTGTCCC < 41bp 0.811779485268152 0.610653055758142 0.76880014 0.16106752 prediction 0.402252859020022 Functional Loss - SLC1A4 ENSG00000115902 CDS Human protein_coding chr2:65217248 chr2:65217251 synonymous SNV . 0 24 hm5C_associated_SNPs_98020 0 0 1 0 1 SLC1A4 chr2:65217304 5'GT 65217304 Upstream 54bp
chr2 26785516 26785516 1 + G A UCEC 26785513 + 26785493 26785533 41 AGCGCGGGCACCCTACTGACCGAGTTCAATGCCGCCTACGT AGCGCGGGCACCCTACTGACCGAATTCAATGCCGCCTACGT < 41bp 0.70112298352459 0.454247028727885 0.7170663 0.3293017 prediction 0.402245967049181 Functional Loss - C2orf70 ENSG00000173557 CDS Human protein_coding chr2:26785513 chr2:26785516 synonymous SNV . 0 24 hm5C_associated_SNPs_98024 0 0 0 0 1 C2orf70 chr2:26785554 5'GT 26785554 Upstream 39bp
chr17 18918367 18918367 1 + C T UCEC 18918364 + 18918344 18918384 41 TCCCCCGTCCCACCCCAGGTCTGCGGGGGCTGATGATCGCA TCCCCCGTCCCACCCCAGGTCTGTGGGGGCTGATGATCGCA < 41bp 0.744106076313681 0.542984005992205 0.09478325 0.16288915 prediction 0.402244140642951 Functional Loss - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18918364 chr17:18918367 nonsynonymous SNV 0.878 5 24 hm5C_associated_SNPs_98025 0 0 0 0 1 SLC5A10 chr17:18918362 3'AG 18918362 Downstream 6bp
chr3 101476691 101476691 1 + C T SKCM 101476688 + 101476668 101476708 41 GCCAGTTGCATCAGGACTGTCTCCACTATCACCTACAGTTG GCCAGTTGCATCAGGACTGTCTCTACTATCACCTACAGTTG < 41bp 0.806034103366228 0.604913469228326 0.9267229 0.7647811 prediction 0.402241268275803 Functional Loss - CEP97 ENSG00000182504 CDS Human protein_coding chr3:101476688 chr3:101476691 nonsynonymous SNV 0.814 4 24 hm5C_associated_SNPs_98026 0 0 1 0 1 CEP97 chr3:101476655 3'AG 101476655 Downstream 37bp
chr7 295837 295837 1 + C T SARC 295834 + 295814 295854 41 GCCAACAACATCTGCTTCTACGGCGAGTGTTCCTACTACTG GCCAACAACATCTGCTTCTACGGTGAGTGTTCCTACTACTG < 41bp 0.720264374609925 0.519144058014378 0.32818672 0.27295843 prediction 0.402240633191094 Functional Loss - FAM20C ENSG00000177706 CDS Human protein_coding chr7:295834 chr7:295837 synonymous SNV . 0 24 hm5C_associated_SNPs_98027 0 0 1 0 1 FAM20C chr7:295815 3'AG 295815 Downstream 23bp
chr7 44044804 44044804 1 + C T rs529238143 44044801 + 44044781 44044821 41 GCTTCCCCTCCTGGCAATACCAACGCCTTCATTTCTTCCTG GCTTCCCCTCCTGGCAATACCAATGCCTTCATTTCTTCCTG < 41bp 0.74469790542801 0.543577795646916 0.24921146 0.25414798 prediction 0.402240219562188 Functional Loss - SPDYE1 ENSG00000136206 CDS Human protein_coding chr7:44044801 chr7:44044804 nonsynonymous SNV 0.007 1 24 hm5C_associated_SNPs_98028 0 0 0 0 2 SPDYE1 chr7:44044741 3'AG 44044741 Downstream 64bp
chr7 44044804 44044804 1 + C T rs529238143 44044801 + 44044781 44044821 41 GCTTCCCCTCCTGGCAATACCAACGCCTTCATTTCTTCCTG GCTTCCCCTCCTGGCAATACCAATGCCTTCATTTCTTCCTG < 41bp 0.74469790542801 0.543577795646916 0.24921146 0.25414798 prediction 0.402240219562188 Functional Loss - SPDYE1 ENSG00000136206 CDS Human protein_coding chr7:44044801 chr7:44044804 nonsynonymous SNV 0.007 1 24 hm5C_associated_SNPs_98028 0 0 0 0 2 SPDYE1 chr7:44044826 5'GT 44044826 Upstream 23bp
chr21 43702404 43702404 1 + G T LUSC 43702400 + 43702380 43702420 41 CCAGGTCAAGGAGATACTGACAGCGCTGGGCTTGCTGTCTT CCAGGTCAAGGAGATACTGACAGCTCTGGGCTTGCTGTCTT < 41bp 0.747022480489487 0.54590637309381 0.82325035 0.58532727 prediction 0.402232214791355 Functional Loss - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43702400 chr21:43702404 synonymous SNV . 0 25 hm5C_associated_SNPs_98029 0 0 0 0 1 ABCG1 chr21:43702384 3'AG 43702384 Downstream 21bp
chr2 95541471 95541471 1 + G T LUAD 95541468 + 95541448 95541488 41 GGCCCAACATGGAGCTGTGCCGTGACGCAGCCCAGTTCAGG GGCCCAACATGGAGCTGTGCCGTTACGCAGCCCAGTTCAGG < 41bp 0.701116019878259 0.317189737424005 0.21279174 0.11409053 prediction 0.402232039756518 Functional Loss - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95541468 chr2:95541471 nonsynonymous SNV 0.009 4 24 hm5C_associated_SNPs_98031 0 0 0 0 1 TEKT4 chr2:95541487 5'GT 95541487 Upstream 17bp
chr7 2649718 2649718 1 + T C rs527335824 2649717 + 2649697 2649737 41 ACAGGCCTTGGCACCTCTACCTGGGGATGACGTCAACTCCG ACAGGCCTTGGCACCTCTACCCGGGGATGACGTCAACTCCG < 41bp 0.787266490755729 0.58615216620765 0.93418443 0.9585884 prediction 0.402228649096158 Functional Loss - IQCE ENSG00000106012 CDS Human protein_coding chr7:2649717 chr7:2649718 synonymous SNV . 0 22 hm5C_associated_SNPs_98032 0 0 0 0 1 IQCE chr7:2649678 3'AG 2649678 Downstream 41bp
chr2 3743356 3743356 1 + G T OV 3743353 + 3743333 3743373 41 TTCGGTACTGGACAAAAAGACTGGACTGCAACTGACCCCAA TTCGGTACTGGACAAAAAGACTGTACTGCAACTGACCCCAA < 41bp 0.85625386274368 0.655142598628658 0.5228595 0.12692189 prediction 0.402222528230044 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3743353 chr2:3743356 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_98036 0 0 0 0 1 ALLC chr2:3743307 3'AG 3743307 Downstream 50bp
chrX 122318468 122318468 1 + C T UCEC 122318466 + 122318446 122318486 41 TGGGGCTTTTGGGTCATTCTCACGGAGGATTCCCCAACACC TGGGGCTTTTGGGTCATTCTCATGGAGGATTCCCCAACACC < 41bp 0.817664293115597 0.616553204060299 0.9077326 0.8829756 prediction 0.402222178110595 Functional Loss - GRIA3 ENSG00000125675 CDS Human protein_coding chrX:122318466 chrX:122318468 synonymous SNV . 0 23 hm5C_associated_SNPs_98037 0 0 0 0 1 GRIA3 chrX:122318496 5'GT 122318496 Upstream 29bp
chr13 49039375 49039375 1 + G A UCEC 49039372 + 49039352 49039392 41 GTCACCAATACCTCACATTCCTCGAAGCCCTTACAAGTTTC GTCACCAATACCTCACATTCCTCAAAGCCCTTACAAGTTTC < 41bp 0.797093517959416 0.595984139874401 0.5593939 0.3462705 prediction 0.402218756170031 Functional Loss - RB1 ENSG00000139687 CDS Human protein_coding chr13:49039372 chr13:49039375 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_98040 2 0 1 0 1 RB1 chr13:49039341 3'AG 49039341 Downstream 35bp
chr15 25448236 25448236 1 + G T LUSC 25448234 + 25448214 25448254 41 TGGGGCCGCTGGCCCCACATCAGTGTCCGTCATCCCGGCGT TGGGGCCGCTGGCCCCACATCATTGTCCGTCATCCCGGCGT < 41bp 0.701108699578857 0.357681793476404 0.43879837 0.22409949 prediction 0.402217399157713 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25448234 chr15:25448236 . . 0 23 hm5C_associated_SNPs_98041 0 0 0 0 2 SNHG14 chr15:25448187 3'AG 25448187 Downstream 50bp
chr15 25448236 25448236 1 + G T LUSC 25448234 + 25448214 25448254 41 TGGGGCCGCTGGCCCCACATCAGTGTCCGTCATCCCGGCGT TGGGGCCGCTGGCCCCACATCATTGTCCGTCATCCCGGCGT < 41bp 0.701108699578857 0.357681793476404 0.43879837 0.22409949 prediction 0.402217399157713 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25448234 chr15:25448236 . . 0 23 hm5C_associated_SNPs_98041 0 0 0 0 2 SNHG14 chr15:25448317 5'GT 25448317 Upstream 82bp
chrX 69457098 69457098 1 + G T UCEC 69457094 + 69457074 69457114 41 GTTAGGGAGTACCTCATGGCCAAAGGTGCTTCTGACCATAC GTTAGGGAGTACCTCATGGCCAAATGTGCTTCTGACCATAC < 41bp 0.707166597388099 0.506065285026367 0.9037703 0.9285961 prediction 0.402202624723464 Functional Loss - AWAT1 ENSG00000204195 CDS Human protein_coding chrX:69457094 chrX:69457098 nonsynonymous SNV 0.955 4 25 hm5C_associated_SNPs_98047 0 0 0 0 1 AWAT1 chrX:69457098 5'GT 69457098 Upstream 1bp
chr3 186442972 186442972 1 + G T UCEC 186442969 + 186442949 186442989 41 ACCTGGAGCCCATTCTGAGACACGGCATTCAGTACTTTAAC ACCTGGAGCCCATTCTGAGACACTGCATTCAGTACTTTAAC < 41bp 0.701097898537456 0.298405123840121 0.06499076 0.05261287 prediction 0.402195797074912 Functional Loss - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186442969 chr3:186442972 nonsynonymous SNV 0.020 3 24 hm5C_associated_SNPs_98051 0 0 0 0 2 KNG1 chr3:186442877 3'AG 186442877 Downstream 96bp
chr3 186442972 186442972 1 + G T UCEC 186442969 + 186442949 186442989 41 ACCTGGAGCCCATTCTGAGACACGGCATTCAGTACTTTAAC ACCTGGAGCCCATTCTGAGACACTGCATTCAGTACTTTAAC < 41bp 0.701097898537456 0.298405123840121 0.06499076 0.05261287 prediction 0.402195797074912 Functional Loss - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186442969 chr3:186442972 nonsynonymous SNV 0.020 3 24 hm5C_associated_SNPs_98051 0 0 0 0 2 KNG1 chr3:186443049 5'GT 186443049 Upstream 78bp
chr1 148932920 148932920 1 + G A LUSC 148932917 + 148932897 148932937 41 GCGGCCAAGACTCCGTCCTGCAAGGTAAGGTCCCCTCCAGG GCGGCCAAGACTCCGTCCTGCAAAGTAAGGTCCCCTCCAGG < 41bp 0.825799231650424 0.624702492248022 0.9023752 0.799852 prediction 0.402193478804804 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932917 chr1:148932920 . . 0 24 hm5C_associated_SNPs_98053 0 0 0 6 1 LOC645166 chr1:148932920 5'GT 148932920 Upstream 1bp
chr14 58698956 58698956 1 + C T COAD 58698953 + 58698933 58698973 41 ATTTCGAATTCATACTCCACCTGCAAAAGCTAATTGTGTGG ATTTCGAATTCATACTCCACCTGTAAAAGCTAATTGTGTGG < 41bp 0.701094293487138 0.470013389836149 0.028706253 0.055133075 prediction 0.402188586974277 Functional Loss - ACTR10 ENSG00000131966 CDS Human protein_coding chr14:58698953 chr14:58698956 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_98056 0 0 0 1 1 ACTR10 chr14:58698985 5'GT 58698985 Upstream 30bp
chr1 53675717 53675717 1 + G A HNSC 53675714 + 53675694 53675734 41 GTTTGATATGTACCTATCTGCTCGAGACTCCGTTGTTCTGA GTTTGATATGTACCTATCTGCTCAAGACTCCGTTGTTCTGA < 41bp 0.701091991668882 0.481703383624061 0.49943715 0.2798757 prediction 0.402183983337764 Functional Loss - CPT2 ENSG00000157184 CDS Human protein_coding chr1:53675714 chr1:53675717 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_98057 0 0 1 0 1 CPT2 chr1:53675687 3'AG 53675687 Downstream 31bp
chr16 14743705 14743705 1 + C T UCEC 14743703 + 14743683 14743723 41 GGAGCAGCAGGGAATCTGAACACGACCTCCTGGTCCACAAG GGAGCAGCAGGGAATCTGAACATGACCTCCTGGTCCACAAG < 41bp 0.870695641294414 0.669605864602743 0.30279496 0.24439353 prediction 0.402179553383341 Functional Loss - BFAR ENSG00000103429 CDS Human protein_coding chr16:14743703 chr16:14743705 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_98058 0 0 1 0 1 BFAR chr16:14743661 3'AG 14743661 Downstream 45bp
chr6 43970470 43970470 1 + G A CESC 43970467 + 43970447 43970487 41 GGCTGGGTGCAGACGCTGGCCCGGATGTCGCGGAGGACTCG GGCTGGGTGCAGACGCTGGCCCGAATGTCGCGGAGGACTCG < 41bp 0.820950764868847 0.619861975331169 0.54451984 0.061938882 prediction 0.402177579075355 Functional Loss - C6orf223 ENSG00000181577 CDS Human protein_coding chr6:43970467 chr6:43970470 synonymous SNV . 0 24 hm5C_associated_SNPs_98060 0 0 0 0 1 C6orf223 chr6:43970418 3'AG 43970418 Downstream 53bp
chr15 102294630 102294630 1 + G A rs541195603 102294627 + 102294607 102294647 41 GAGCAGGCACAGCGGTGCGACGAGATGCTGCTTCTCAGAGC GAGCAGGCACAGCGGTGCGACGAAATGCTGCTTCTCAGAGC < 41bp 0.788184914257089 0.587102025008156 0.8156565 0.6268381 prediction 0.402165778497865 Functional Loss - LOC100128108;OR4F6 ENSG00000259660 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102294627 chr15:102294630 . . 0 24 hm5C_associated_SNPs_98063 0 0 0 0 1 LOC100128108;OR4F6 chr15:102294598 3'AG 102294598 Downstream 33bp
chr6 157963704 157963704 1 + C T UCEC 157963701 + 157963681 157963721 41 TTTGTGATGGGGACCCTGCTCCGCACCAGCTTCAGCGACCC TTTGTGATGGGGACCCTGCTCCGTACCAGCTTCAGCGACCC < 41bp 0.768154870171679 0.567073080429529 0.18146506 0.13761708 prediction 0.4021635794843 Functional Loss - ZDHHC14 ENSG00000175048 CDS Human protein_coding chr6:157963701 chr6:157963704 synonymous SNV . 0 24 hm5C_associated_SNPs_98066 0 0 1 0 1 ZDHHC14 chr6:157963777 5'GT 157963777 Upstream 74bp
chr9 74526699 74526699 1 + C T LUAD 74526696 + 74526676 74526716 41 CTCGTTCCAGACCTCAGAAGCACCAGAATACGTTTAGCTTC CTCGTTCCAGACCTCAGAAGCACTAGAATACGTTTAGCTTC < 41bp 0.744382986906702 0.543302231941798 0.12899086 0.15943912 prediction 0.402161509929808 Functional Loss - C9orf85 ENSG00000155621 CDS Human protein_coding chr9:74526696 chr9:74526699 stopgain 1.000 1 24 hm5C_associated_SNPs_98067 0 0 1 0 1 C9orf85 chr9:74526752 5'GT 74526752 Upstream 54bp
chr17 79213403 79213403 1 + G T rs374420845 79213399 + 79213379 79213419 41 CGGCAGGTGCGTGCAGGCCTCCACGGCCCCGGGCGGCCGCC CGGCAGGTGCGTGCAGGCCTCCACTGCCCCGGGCGGCCGCC < 41bp 0.709707313677921 0.508627958197787 0.41289645 0.3177793 prediction 0.402158710960267 Functional Loss - NDUFAF8 ENSG00000224877 CDS Human protein_coding chr17:79213399 chr17:79213403 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_98069 0 0 1 0 3 NDUFAF8 chr17:79213368 3'AG 79213368 Downstream 36bp
chr17 79213403 79213403 1 + G T rs374420845 79213399 + 79213379 79213419 41 CGGCAGGTGCGTGCAGGCCTCCACGGCCCCGGGCGGCCGCC CGGCAGGTGCGTGCAGGCCTCCACTGCCCCGGGCGGCCGCC < 41bp 0.709707313677921 0.508627958197787 0.41289645 0.3177793 prediction 0.402158710960267 Functional Loss - NDUFAF8 ENSG00000224877 CDS Human protein_coding chr17:79213399 chr17:79213403 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_98069 0 0 1 0 3 NDUFAF8 chr17:79213395 3'AG 79213395 Downstream 9bp
chr17 79213403 79213403 1 + G T rs374420845 79213399 + 79213379 79213419 41 CGGCAGGTGCGTGCAGGCCTCCACGGCCCCGGGCGGCCGCC CGGCAGGTGCGTGCAGGCCTCCACTGCCCCGGGCGGCCGCC < 41bp 0.709707313677921 0.508627958197787 0.41289645 0.3177793 prediction 0.402158710960267 Functional Loss - NDUFAF8 ENSG00000224877 CDS Human protein_coding chr17:79213399 chr17:79213403 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_98069 0 0 1 0 3 NDUFAF8 chr17:79213478 5'GT 79213478 Upstream 76bp
chr17 14248414 14248414 1 + G C COAD 14248410 + 14248390 14248430 41 GACGCCCAGTTACTTCGTCACGCGGGAGGCCCCTGCGCGCA GACGCCCAGTTACTTCGTCACGCGCGAGGCCCCTGCGCGCA < 41bp 0.878051774963673 0.676984831168654 0.901379 0.6237709 prediction 0.40213388759004 Functional Loss - HS3ST3B1 ENSG00000125430 CDS Human protein_coding chr17:14248410 chr17:14248414 synonymous SNV . 0 25 hm5C_associated_SNPs_98079 0 0 0 0 1 HS3ST3B1 chr17:14248345 3'AG 14248345 Downstream 70bp
chr4 108931032 108931032 1 + G T UCEC 108931030 + 108931010 108931050 41 AGTGGCAAAGAAGAAGTTTGCAGAAAACCTTAAGGTAATTT AGTGGCAAAGAAGAAGTTTGCATAAAACCTTAAGGTAATTT < 41bp 0.701063028354305 0.367687006863438 0.2922271 0.0944463 prediction 0.402126056708609 Functional Loss - HADH ENSG00000138796 CDS Human protein_coding chr4:108931030 chr4:108931032 stopgain 0.997 1 23 hm5C_associated_SNPs_98083 0 0 1 0 1 HADH chr4:108931043 5'GT 108931043 Upstream 12bp
chr12 57972099 57972099 1 + G A SKCM 57972096 + 57972076 57972116 41 TTTCCTTTCTTGAGAACAACCTGGAACAGCTTACAAAGGTT TTTCCTTTCTTGAGAACAACCTGAAACAGCTTACAAAGGTT < 41bp 0.701059691344995 0.456082088012664 0.29184675 0.09762138 prediction 0.40211938268999 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57972096 chr12:57972099 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_98085 0 0 1 0 1 KIF5A chr12:57972125 5'GT 57972125 Upstream 27bp
chr6 147067116 147067116 1 + G A LIHC 147067113 + 147067093 147067133 41 CGACACATATGTAGCAGCCTCACGATGGAAACTGCGTCTCA CGACACATATGTAGCAGCCTCACAATGGAAACTGCGTCTCA < 41bp 0.825687033023599 0.624628130993842 0.1328721 0.08644116 prediction 0.402117804059513 Functional Loss - ADGB ENSG00000118492 CDS Human protein_coding chr6:147067113 chr6:147067116 nonsynonymous SNV 0.810 0 24 hm5C_associated_SNPs_98086 0 0 0 0 1 ADGB chr6:147067058 3'AG 147067058 Downstream 59bp
chr17 77709420 77709420 1 + G T LUAD 77709416 + 77709396 77709436 41 CTTCCACTACGCCAACAACCCCAGGGTCACACCCCTGCTGA CTTCCACTACGCCAACAACCCCAGTGTCACACCCCTGCTGA < 41bp 0.732627402673774 0.531569156018305 0.9309046 0.59273773 prediction 0.402116493310938 Functional Loss - ENPP7 ENSG00000182156 CDS Human protein_coding chr17:77709416 chr17:77709420 nonsynonymous SNV 0.897 4 25 hm5C_associated_SNPs_98087 0 0 1 0 1 ENPP7 chr17:77709468 5'GT 77709468 Upstream 49bp
chr19 4207964 4207964 1 + C T rs61742016 4207961 + 4207941 4207981 41 GCCCAGCGCCCCTCCCCACCCAGCGGTATGCAAGCCCCACC GCCCAGCGCCCCTCCCCACCCAGTGGTATGCAAGCCCCACC < 41bp 0.722312244917212 0.521254754582719 0.6794803 0.43893445 prediction 0.402114980668986 Functional Loss - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4207961 chr19:4207964 synonymous SNV . 0 24 hm5C_associated_SNPs_98088 0 0 0 0 1 ANKRD24 chr19:4207965 5'GT 4207965 Upstream 2bp
chr19 1455391 1455391 1 + G A BLCA 1455388 + 1455368 1455408 41 GCCTGCCTTTGCCAGCAGTTCTCGATGCAGATGGACCTGAT GCCTGCCTTTGCCAGCAGTTCTCAATGCAGATGGACCTGAT < 41bp 0.701052672939115 0.46944353170907 0.9190029 0.80451894 prediction 0.40210534587823 Functional Loss - APC2 ENSG00000115266 CDS Human protein_coding chr19:1455388 chr19:1455391 synonymous SNV . 0 24 hm5C_associated_SNPs_98093 0 0 0 0 2 APC2 chr19:1455383 3'AG 1455383 Downstream 9bp
chr19 1455391 1455391 1 + G A BLCA 1455388 + 1455368 1455408 41 GCCTGCCTTTGCCAGCAGTTCTCGATGCAGATGGACCTGAT GCCTGCCTTTGCCAGCAGTTCTCAATGCAGATGGACCTGAT < 41bp 0.701052672939115 0.46944353170907 0.9190029 0.80451894 prediction 0.40210534587823 Functional Loss - APC2 ENSG00000115266 CDS Human protein_coding chr19:1455388 chr19:1455391 synonymous SNV . 0 24 hm5C_associated_SNPs_98093 0 0 0 0 2 APC2 chr19:1455386 3'AG 1455386 Downstream 6bp
chr8 48889314 48889314 1 + T C STAD 48889313 + 48889293 48889333 41 TGATGATTTCCTGACAGTGACTGGGAAGACCGTGCGCTTGC TGATGATTTCCTGACAGTGACCGGGAAGACCGTGCGCTTGC < 41bp 0.815117328673431 0.614065220219495 0.36219683 0.41152808 prediction 0.402104216907871 Functional Loss - MCM4 ENSG00000104738 CDS Human protein_coding chr8:48889313 chr8:48889314 synonymous SNV . 0 22 hm5C_associated_SNPs_98094 0 0 1 0 1 MCM4 chr8:48889246 3'AG 48889246 Downstream 69bp
chr19 35557170 35557170 1 + C T GBM 35557167 + 35557147 35557187 41 CCCCAGACTCACTCCGAAGCCAGCGGCATGGTGACCCAGCT CCCCAGACTCACTCCGAAGCCAGTGGCATGGTGACCCAGCT < 41bp 0.720904754964261 0.519852825261446 0.9069387 0.73750705 prediction 0.40210385940563 Functional Loss - HPN ENSG00000105707 CDS Human protein_coding chr19:35557167 chr19:35557170 synonymous SNV . 0 24 hm5C_associated_SNPs_98095 0 0 1 1 1 HPN chr19:35557153 3'AG 35557153 Downstream 18bp
chr12 27543055 27543055 1 + C T GBM 27543052 + 27543032 27543072 41 GTTTGCAAGTTCACAGTAATCTCCACGCTGGAAGGACACGT GTTTGCAAGTTCACAGTAATCTCTACGCTGGAAGGACACGT < 41bp 0.80990143494859 0.608849938232187 0.8833127 0.37069643 prediction 0.402102993432806 Functional Loss - ARNTL2 ENSG00000029153 CDS Human protein_coding chr12:27543052 chr12:27543055 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_98096 0 0 1 0 1 ARNTL2 chr12:27543029 3'AG 27543029 Downstream 27bp
chr19 15769319 15769319 1 + G T COAD 15769317 + 15769297 15769337 41 ACAGGCATTATCTGCCTCATCAGTGTTTTTGGAACCCATCA ACAGGCATTATCTGCCTCATCATTGTTTTTGGAACCCATCA < 41bp 0.7010512824915 0.338871827898394 0.20515037 0.08171594 prediction 0.402102564982999 Functional Loss - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15769317 chr19:15769319 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_98097 0 0 0 0 2 CYP4F3 chr19:15769301 3'AG 15769301 Downstream 19bp
chr19 15769319 15769319 1 + G T COAD 15769317 + 15769297 15769337 41 ACAGGCATTATCTGCCTCATCAGTGTTTTTGGAACCCATCA ACAGGCATTATCTGCCTCATCATTGTTTTTGGAACCCATCA < 41bp 0.7010512824915 0.338871827898394 0.20515037 0.08171594 prediction 0.402102564982999 Functional Loss - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15769317 chr19:15769319 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_98097 0 0 0 0 2 CYP4F3 chr19:15769365 5'GT 15769365 Upstream 47bp
chr7 129394908 129394908 1 + G A PAAD 129394905 + 129394885 129394925 41 ACCAGACTGTGGTGACCAGCCTCGCCCAGGGCAACGGACCA ACCAGACTGTGGTGACCAGCCTCACCCAGGGCAACGGACCA < 41bp 0.701048379468088 0.473621512614004 0.057109058 0.008925825 prediction 0.402096758936176 Functional Loss - NRF1 ENSG00000106459 CDS Human protein_coding chr7:129394905 chr7:129394908 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_98100 0 0 1 0 1 NRF1 chr7:129394858 3'AG 129394858 Downstream 51bp
chr14 21570911 21570911 1 + G T SARC 21570908 + 21570888 21570928 41 AAACCAGGATGCTGCAGGAGCCAGAGTCTGCACTATCAAGA AAACCAGGATGCTGCAGGAGCCATAGTCTGCACTATCAAGA < 41bp 0.701048260281929 0.300638219191147 0.8118213 0.28179705 prediction 0.402096520563857 Functional Loss - TMEM253 ENSG00000232070 CDS Human protein_coding chr14:21570908 chr14:21570911 nonsynonymous SNV 0.980 0 24 hm5C_associated_SNPs_98101 0 0 0 0 1 TMEM253 chr14:21570938 5'GT 21570938 Upstream 28bp
chr6 44150701 44150701 1 + G T UCEC 44150699 + 44150679 44150719 41 ACATCTTCAGAGAGTGTGACCAGGACCATTCAGGCACCTTG ACATCTTCAGAGAGTGTGACCATGACCATTCAGGCACCTTG < 41bp 0.701046099685411 0.341482166301043 0.107988805 0.0064466 prediction 0.402092199370822 Functional Loss - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44150699 chr6:44150701 nonsynonymous SNV 0.877 0 23 hm5C_associated_SNPs_98107 0 0 0 0 2 CAPN11 chr6:44150678 3'AG 44150678 Downstream 24bp
chr6 44150701 44150701 1 + G T UCEC 44150699 + 44150679 44150719 41 ACATCTTCAGAGAGTGTGACCAGGACCATTCAGGCACCTTG ACATCTTCAGAGAGTGTGACCATGACCATTCAGGCACCTTG < 41bp 0.701046099685411 0.341482166301043 0.107988805 0.0064466 prediction 0.402092199370822 Functional Loss - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44150699 chr6:44150701 nonsynonymous SNV 0.877 0 23 hm5C_associated_SNPs_98107 0 0 0 0 2 CAPN11 chr6:44150756 5'GT 44150756 Upstream 56bp
chrX 47969979 47969979 1 + T C LGG 47969978 + 47969958 47969998 41 AGTATGAGGCCATGACTAAACTAGGTAACAGAAAGTTCTAG AGTATGAGGCCATGACTAAACCAGGTAACAGAAAGTTCTAG < 41bp 0.806047304404411 0.605002723425133 0.40176576 0.8172912 prediction 0.402089161958554 Functional Loss - SSX6 ENSG00000171483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:47969978 chrX:47969979 . . 0 22 hm5C_associated_SNPs_98108 0 0 0 0 1 SSX6 chrX:47969981 5'GT 47969981 Upstream 3bp
chr9 131482500 131482500 1 + G A SKCM 131482497 + 131482477 131482517 41 CCCAGCTCCTCCAGAAGTGCCCGGAGAAGCGCCTCGGGGCA CCCAGCTCCTCCAGAAGTGCCCGAAGAAGCGCCTCGGGGCA < 41bp 0.701041975426373 0.447226559697036 0.7543555 0.11315513 prediction 0.402083950852746 Functional Loss - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131482497 chr9:131482500 nonsynonymous SNV 0.964 1 24 hm5C_associated_SNPs_98110 0 0 0 0 2 PKN3 chr9:131482482 3'AG 131482482 Downstream 19bp
chr9 131482500 131482500 1 + G A SKCM 131482497 + 131482477 131482517 41 CCCAGCTCCTCCAGAAGTGCCCGGAGAAGCGCCTCGGGGCA CCCAGCTCCTCCAGAAGTGCCCGAAGAAGCGCCTCGGGGCA < 41bp 0.701041975426373 0.447226559697036 0.7543555 0.11315513 prediction 0.402083950852746 Functional Loss - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131482497 chr9:131482500 nonsynonymous SNV 0.964 1 24 hm5C_associated_SNPs_98110 0 0 0 0 2 PKN3 chr9:131482518 5'GT 131482518 Upstream 19bp
chr13 113907459 113907459 1 + C T LUAD 113907456 + 113907436 113907476 41 GAAAGCACAGTGGTCGAAAACTTCAGTGGCAAACTACTTTG GAAAGCACAGTGGTCGAAAACTTTAGTGGCAAACTACTTTG < 41bp 0.701041137820589 0.460112002963944 0.14075822 0.080388635 prediction 0.402082275641178 Functional Loss - CUL4A ENSG00000139842 CDS Human protein_coding chr13:113907456 chr13:113907459 stopgain 0.217 1 24 hm5C_associated_SNPs_98112 0 0 1 0 2 CUL4A chr13:113907396 3'AG 113907396 Downstream 64bp
chr13 113907459 113907459 1 + C T LUAD 113907456 + 113907436 113907476 41 GAAAGCACAGTGGTCGAAAACTTCAGTGGCAAACTACTTTG GAAAGCACAGTGGTCGAAAACTTTAGTGGCAAACTACTTTG < 41bp 0.701041137820589 0.460112002963944 0.14075822 0.080388635 prediction 0.402082275641178 Functional Loss - CUL4A ENSG00000139842 CDS Human protein_coding chr13:113907456 chr13:113907459 stopgain 0.217 1 24 hm5C_associated_SNPs_98112 0 0 1 0 2 CUL4A chr13:113907509 5'GT 113907509 Upstream 51bp
chr4 109571910 109571910 1 + G T LUAD 109571906 + 109571886 109571926 41 GCACATGCCGTCGGCCATGACTGTGTATGCTCTGGTGGTGG GCACATGCCGTCGGCCATGACTGTTTATGCTCTGGTGGTGG < 41bp 0.704916060252892 0.503876052845855 0.08952579 0.13091272 prediction 0.402080014814074 Functional Loss - OSTC ENSG00000198856 CDS Human protein_coding chr4:109571906 chr4:109571910 synonymous SNV . 0 25 hm5C_associated_SNPs_98113 0 0 1 0 1 OSTC chr4:109571950 5'GT 109571950 Upstream 41bp
chr11 59860900 59860900 1 + G T LUAD 59860896 + 59860876 59860916 41 AGAGGAAGCCTGGGAGCAAACACTGCCAGCAGCATAGCTGG AGAGGAAGCCTGGGAGCAAACACTTCCAGCAGCATAGCTGG < 41bp 0.747654280669312 0.546615941121264 0.30355275 0.080881625 prediction 0.402076679096095 Functional Loss - MS4A2 ENSG00000149534 CDS Human protein_coding chr11:59860896 chr11:59860900 nonsynonymous SNV 0.982 1 25 hm5C_associated_SNPs_98115 0 0 0 0 1 MS4A2 chr11:59860873 3'AG 59860873 Downstream 28bp
chr4 89414237 89414237 1 + G T UCEC 89414233 + 89414213 89414253 41 GTTCTTCTACTGTCTGTTTGCAGAGATGATCCAGCCGGAAT GTTCTTCTACTGTCTGTTTGCAGATATGATCCAGCCGGAAT < 41bp 0.70103630631975 0.495773626004045 0.66653407 0.25332683 prediction 0.4020726126395 Functional Loss - HERC5 ENSG00000138646 CDS Human protein_coding chr4:89414233 chr4:89414237 nonsynonymous SNV 0.978 0 25 hm5C_associated_SNPs_98117 0 0 0 0 2 HERC5 chr4:89414163 3'AG 89414163 Downstream 75bp
chr4 89414237 89414237 1 + G T UCEC 89414233 + 89414213 89414253 41 GTTCTTCTACTGTCTGTTTGCAGAGATGATCCAGCCGGAAT GTTCTTCTACTGTCTGTTTGCAGATATGATCCAGCCGGAAT < 41bp 0.70103630631975 0.495773626004045 0.66653407 0.25332683 prediction 0.4020726126395 Functional Loss - HERC5 ENSG00000138646 CDS Human protein_coding chr4:89414233 chr4:89414237 nonsynonymous SNV 0.978 0 25 hm5C_associated_SNPs_98117 0 0 0 0 2 HERC5 chr4:89414306 5'GT 89414306 Upstream 70bp
chr9 730166 730166 1 + C T UCEC 730163 + 730143 730183 41 ACCTCAGAAGGAAAGCCAATCAGCAGCCTGGATGCCTTCCC ACCTCAGAAGGAAAGCCAATCAGTAGCCTGGATGCCTTCCC < 41bp 0.721948202698176 0.5209119977752 0.8979875 0.85633206 prediction 0.40207240984595 Functional Loss - KANK1 ENSG00000107104 CDS Human protein_coding chr9:730163 chr9:730166 synonymous SNV . 0 24 hm5C_associated_SNPs_98118 0 0 1 0 1 KANK1 chr9:730248 5'GT 730248 Upstream 83bp
chr12 54905628 54905628 1 + G A SKCM 54905625 + 54905605 54905645 41 TCTGTGGAAGTAATGGAGCGCTGGATTATCAGTAAGTTTAG TCTGTGGAAGTAATGGAGCGCTGAATTATCAGTAAGTTTAG < 41bp 0.701035840869092 0.487282221453212 0.067765564 0.024810284 prediction 0.402071681738184 Functional Loss - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54905625 chr12:54905628 stopgain 0.998 1 24 hm5C_associated_SNPs_98119 0 0 0 0 2 NCKAP1L chr12:54905587 3'AG 54905587 Downstream 42bp
chr12 54905628 54905628 1 + G A SKCM 54905625 + 54905605 54905645 41 TCTGTGGAAGTAATGGAGCGCTGGATTATCAGTAAGTTTAG TCTGTGGAAGTAATGGAGCGCTGAATTATCAGTAAGTTTAG < 41bp 0.701035840869092 0.487282221453212 0.067765564 0.024810284 prediction 0.402071681738184 Functional Loss - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54905625 chr12:54905628 stopgain 0.998 1 24 hm5C_associated_SNPs_98119 0 0 0 0 2 NCKAP1L chr12:54905635 5'GT 54905635 Upstream 8bp
chr16 84346666 84346666 1 + C T rs544235424 84346664 + 84346644 84346684 41 CCCCGGCGCCTGCCAGGCCGCGCGCTGTCAGGCGGACTCCG CCCCGGCGCCTGCCAGGCCGCGTGCTGTCAGGCGGACTCCG < 41bp 0.829099257404224 0.628064331892165 0.18168917 0.21818545 prediction 0.402069851024119 Functional Loss - WFDC1 ENSG00000103175 CDS Human protein_coding chr16:84346664 chr16:84346666 nonsynonymous SNV 0.044 2 23 hm5C_associated_SNPs_98120 0 0 0 0 2 WFDC1 chr16:84346567 3'AG 84346567 Downstream 100bp
chr16 84346666 84346666 1 + C T rs544235424 84346664 + 84346644 84346684 41 CCCCGGCGCCTGCCAGGCCGCGCGCTGTCAGGCGGACTCCG CCCCGGCGCCTGCCAGGCCGCGTGCTGTCAGGCGGACTCCG < 41bp 0.829099257404224 0.628064331892165 0.18168917 0.21818545 prediction 0.402069851024119 Functional Loss - WFDC1 ENSG00000103175 CDS Human protein_coding chr16:84346664 chr16:84346666 nonsynonymous SNV 0.044 2 23 hm5C_associated_SNPs_98120 0 0 0 0 2 WFDC1 chr16:84346759 5'GT 84346759 Upstream 94bp
chrX 100505997 100505997 1 + G C LUSC 100505996 + 100505976 100506016 41 TGTGGCTGGCTGTTCTGCATCGGGTCACCATTGCTGAGCAA TGTGGCTGGCTGTTCTGCATCCGGTCACCATTGCTGAGCAA < 41bp 0.701033329745242 0.370289538697238 0.839625 0.35701948 prediction 0.402066659490485 Functional Loss - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100505996 chrX:100505997 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_98122 0 0 0 0 2 DRP2 chrX:100505906 3'AG 100505906 Downstream 92bp
chrX 100505997 100505997 1 + G C LUSC 100505996 + 100505976 100506016 41 TGTGGCTGGCTGTTCTGCATCGGGTCACCATTGCTGAGCAA TGTGGCTGGCTGTTCTGCATCCGGTCACCATTGCTGAGCAA < 41bp 0.701033329745242 0.370289538697238 0.839625 0.35701948 prediction 0.402066659490485 Functional Loss - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100505996 chrX:100505997 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_98122 0 0 0 0 2 DRP2 chrX:100506072 5'GT 100506072 Upstream 76bp
chr1 226026400 226026400 1 + C T BLCA 226026397 + 226026377 226026417 41 CGTGAAGCCCCCCCAGCTGCCCGCAGGCCATACCCCGAAGC CGTGAAGCCCCCCCAGCTGCCCGTAGGCCATACCCCGAAGC < 41bp 0.772992488094581 0.571962204091548 0.08002648 0.08221391 prediction 0.402060568006066 Functional Loss - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226026397 chr1:226026400 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_98123 0 0 1 0 1 EPHX1 chr1:226026355 3'AG 226026355 Downstream 46bp
chr16 69970311 69970311 1 + C T UCEC 69970308 + 69970288 69970328 41 ACCCACGAGCTGAAGGAGGGCGGCGAGAGCATCCGGGTCAC ACCCACGAGCTGAAGGAGGGCGGTGAGAGCATCCGGGTCAC < 41bp 0.76116522376241 0.560135011841886 0.87934613 0.8348049 prediction 0.402060423841048 Functional Loss - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69970308 chr16:69970311 synonymous SNV . 0 24 hm5C_associated_SNPs_98124 0 0 1 0 2 WWP2 chr16:69970215 3'AG 69970215 Downstream 97bp
chr16 69970311 69970311 1 + C T UCEC 69970308 + 69970288 69970328 41 ACCCACGAGCTGAAGGAGGGCGGCGAGAGCATCCGGGTCAC ACCCACGAGCTGAAGGAGGGCGGTGAGAGCATCCGGGTCAC < 41bp 0.76116522376241 0.560135011841886 0.87934613 0.8348049 prediction 0.402060423841048 Functional Loss - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69970308 chr16:69970311 synonymous SNV . 0 24 hm5C_associated_SNPs_98124 0 0 1 0 2 WWP2 chr16:69970355 5'GT 69970355 Upstream 45bp
chr12 107048084 107048084 1 + C T COAD 107048081 + 107048061 107048101 41 TATATGCATTACCTGGATTTCTGCGAGAAGAATGATACCCA TATATGCATTACCTGGATTTCTGTGAGAAGAATGATACCCA < 41bp 0.701027658419913 0.480370330948894 0.18701676 0.14397326 prediction 0.402055316839825 Functional Loss - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107048081 chr12:107048084 synonymous SNV . 0 24 hm5C_associated_SNPs_98127 0 0 0 0 2 RFX4 chr12:107048006 3'AG 107048006 Downstream 79bp
chr12 107048084 107048084 1 + C T COAD 107048081 + 107048061 107048101 41 TATATGCATTACCTGGATTTCTGCGAGAAGAATGATACCCA TATATGCATTACCTGGATTTCTGTGAGAAGAATGATACCCA < 41bp 0.701027658419913 0.480370330948894 0.18701676 0.14397326 prediction 0.402055316839825 Functional Loss - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107048081 chr12:107048084 synonymous SNV . 0 24 hm5C_associated_SNPs_98127 0 0 0 0 2 RFX4 chr12:107048129 5'GT 107048129 Upstream 46bp
chr3 52842609 52842609 1 + C T UCEC 52842607 + 52842587 52842627 41 AGAAAGGATGCCAGCATCGGCACGAAGGTTGTCTGCTGGTT AGAAAGGATGCCAGCATCGGCATGAAGGTTGTCTGCTGGTT < 41bp 0.848295569319128 0.647270033480803 0.19015911 0.1076926 prediction 0.402051071676651 Functional Loss - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52842607 chr3:52842609 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_98129 0 0 1 0 1 ITIH3 chr3:52842568 3'AG 52842568 Downstream 42bp
chr7 128481255 128481255 1 + G A UCEC 128481252 + 128481232 128481272 41 ATCGAGGGGCCCTCACAAGCCAAGATCGAATGTGACGACAA ATCGAGGGGCCCTCACAAGCCAAAATCGAATGTGACGACAA < 41bp 0.701021814213645 0.464450018113015 0.4316783 0.2816978 prediction 0.402043628427291 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128481252 chr7:128481255 synonymous SNV . 0 24 hm5C_associated_SNPs_98133 0 0 1 0 1 FLNC chr7:128481224 3'AG 128481224 Downstream 32bp
chr11 86120386 86120386 1 + G T UCEC 86120383 + 86120363 86120403 41 GCTGAAGCTATAAGAAACCACAAGAATGAGAAACCGGAATT GCTGAAGCTATAAGAAACCACAATAATGAGAAACCGGAATT < 41bp 0.701021082900041 0.318324931169664 0.19849476 0.15890673 prediction 0.402042165800082 Functional Loss - CCDC81 ENSG00000149201 CDS Human protein_coding chr11:86120383 chr11:86120386 nonsynonymous SNV 0.691 3 24 hm5C_associated_SNPs_98134 0 0 0 0 2 CCDC81 chr11:86120303 3'AG 86120303 Downstream 84bp
chr11 86120386 86120386 1 + G T UCEC 86120383 + 86120363 86120403 41 GCTGAAGCTATAAGAAACCACAAGAATGAGAAACCGGAATT GCTGAAGCTATAAGAAACCACAATAATGAGAAACCGGAATT < 41bp 0.701021082900041 0.318324931169664 0.19849476 0.15890673 prediction 0.402042165800082 Functional Loss - CCDC81 ENSG00000149201 CDS Human protein_coding chr11:86120383 chr11:86120386 nonsynonymous SNV 0.691 3 24 hm5C_associated_SNPs_98134 0 0 0 0 2 CCDC81 chr11:86120407 5'GT 86120407 Upstream 22bp
chr16 67229753 67229753 1 + A T PAAD 67229751 + 67229731 67229771 41 TTCACTCCCACTGGGCCCAACAACACTGGACACCCGGCCAC TTCACTCCCACTGGGCCCAACATCACTGGACACCCGGCCAC < 41bp 0.707717375996268 0.506700689370036 0.19637755 0.24317211 prediction 0.402033373252465 Functional Loss - E2F4 ENSG00000205250 CDS Human protein_coding chr16:67229751 chr16:67229753 nonsynonymous SNV 0.956 1 23 hm5C_associated_SNPs_98135 0 0 1 0 1 E2F4 chr16:67229685 3'AG 67229685 Downstream 69bp
chr19 15131381 15131381 1 + C T BRCA 15131378 + 15131358 15131398 41 AGGTTCTGGAGCAGGCCAGACGCCACTCATGGGTGAACCTC AGGTTCTGGAGCAGGCCAGACGCTACTCATGGGTGAACCTC < 41bp 0.772883673758451 0.571867893028344 0.18662694 0.8000097 prediction 0.402031561460214 Functional Loss - CCDC105 ENSG00000160994 CDS Human protein_coding chr19:15131378 chr19:15131381 nonsynonymous SNV 0.994 0 24 hm5C_associated_SNPs_98137 0 0 0 0 1 CCDC105 chr19:15131471 5'GT 15131471 Upstream 91bp
chrX 115586147 115586147 1 + G A SKCM 115586144 + 115586124 115586164 41 ATTAACATTTTTTTGGTAGGCTGGAATTTACTGGGTTCATC ATTAACATTTTTTTGGTAGGCTGAAATTTACTGGGTTCATC < 41bp 0.754306493460322 0.553292872180192 0.38023674 0.34295452 prediction 0.40202724256026 Functional Loss - SLC6A14 ENSG00000087916 CDS Human other chrX:115586144 chrX:115586147 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_98141 0 0 1 0 2 SLC6A14 chrX:115586143 3'AG 115586143 Downstream 5bp
chrX 115586147 115586147 1 + G A SKCM 115586144 + 115586124 115586164 41 ATTAACATTTTTTTGGTAGGCTGGAATTTACTGGGTTCATC ATTAACATTTTTTTGGTAGGCTGAAATTTACTGGGTTCATC < 41bp 0.754306493460322 0.553292872180192 0.38023674 0.34295452 prediction 0.40202724256026 Functional Loss - SLC6A14 ENSG00000087916 CDS Human other chrX:115586144 chrX:115586147 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_98141 0 0 1 0 2 SLC6A14 chrX:115586242 5'GT 115586242 Upstream 96bp
chr10 124268260 124268260 1 + C T LUAD 124268258 + 124268238 124268278 41 GATAAGATTAAAAAGTTCCTCACGGAGTCCCATGACCGACA GATAAGATTAAAAAGTTCCTCATGGAGTCCCATGACCGACA < 41bp 0.701011687786399 0.420346390252586 0.24881658 0.25269878 prediction 0.402023375572797 Functional Loss - HTRA1 ENSG00000166033 CDS Human protein_coding chr10:124268258 chr10:124268260 nonsynonymous SNV 0.217 1 23 hm5C_associated_SNPs_98143 0 0 0 0 2 HTRA1 chr10:124268172 3'AG 124268172 Downstream 89bp
chr10 124268260 124268260 1 + C T LUAD 124268258 + 124268238 124268278 41 GATAAGATTAAAAAGTTCCTCACGGAGTCCCATGACCGACA GATAAGATTAAAAAGTTCCTCATGGAGTCCCATGACCGACA < 41bp 0.701011687786399 0.420346390252586 0.24881658 0.25269878 prediction 0.402023375572797 Functional Loss - HTRA1 ENSG00000166033 CDS Human protein_coding chr10:124268258 chr10:124268260 nonsynonymous SNV 0.217 1 23 hm5C_associated_SNPs_98143 0 0 0 0 2 HTRA1 chr10:124268286 5'GT 124268286 Upstream 27bp
chr10 124268261 124268261 1 + G A SKCM 124268258 + 124268238 124268278 41 GATAAGATTAAAAAGTTCCTCACGGAGTCCCATGACCGACA GATAAGATTAAAAAGTTCCTCACAGAGTCCCATGACCGACA < 41bp 0.701011687786399 0.454772823418221 0.24881658 0.050709903 prediction 0.402023375572797 Functional Loss - HTRA1 ENSG00000166033 CDS Human protein_coding chr10:124268258 chr10:124268261 synonymous SNV . 0 24 hm5C_associated_SNPs_98144 0 0 0 0 2 HTRA1 chr10:124268172 3'AG 124268172 Downstream 90bp
chr10 124268261 124268261 1 + G A SKCM 124268258 + 124268238 124268278 41 GATAAGATTAAAAAGTTCCTCACGGAGTCCCATGACCGACA GATAAGATTAAAAAGTTCCTCACAGAGTCCCATGACCGACA < 41bp 0.701011687786399 0.454772823418221 0.24881658 0.050709903 prediction 0.402023375572797 Functional Loss - HTRA1 ENSG00000166033 CDS Human protein_coding chr10:124268258 chr10:124268261 synonymous SNV . 0 24 hm5C_associated_SNPs_98144 0 0 0 0 2 HTRA1 chr10:124268286 5'GT 124268286 Upstream 26bp
chr11 63176211 63176211 1 + G A SKCM 63176208 + 63176188 63176228 41 GCAGGAGCCCTGGCTCCCCTCATGATGATCCTAAGTGTGTA GCAGGAGCCCTGGCTCCCCTCATAATGATCCTAAGTGTGTA < 41bp 0.701011572184133 0.452474395030396 0.3823623 0.29035753 prediction 0.402023144368265 Functional Loss - SLC22A9 ENSG00000149742 CDS Human protein_coding chr11:63176208 chr11:63176211 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_98145 0 0 0 0 1 SLC22A9 chr11:63176148 3'AG 63176148 Downstream 64bp
chr19 6937294 6937294 1 + G A SKCM 6937291 + 6937271 6937311 41 CCTTTGCCCAGCTCTTCATCCTGGGCTGCTCCTGGGTGCTG CCTTTGCCCAGCTCTTCATCCTGAGCTGCTCCTGGGTGCTG < 41bp 0.837418947373649 0.636407494541206 0.5096579 0.28895497 prediction 0.402022905664887 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6937291 chr19:6937294 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_98146 0 0 0 0 1 ADGRE1 chr19:6937254 3'AG 6937254 Downstream 41bp
chr8 125035809 125035809 1 + C T KIRC 125035806 + 125035786 125035826 41 GCGGGGCAGATGGGCAAACACTGCGGCAAGATCAAAACTCA GCGGGGCAGATGGGCAAACACTGTGGCAAGATCAAAACTCA < 41bp 0.701011299674937 0.483571916291533 0.21854368 0.15405694 prediction 0.402022599349875 Functional Loss - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:125035806 chr8:125035809 synonymous SNV . 0 24 hm5C_associated_SNPs_98148 0 0 0 0 1 FER1L6 chr8:125035836 5'GT 125035836 Upstream 28bp
chr10 99508086 99508086 1 + C T rs116366646 99508084 + 99508064 99508104 41 GCACATGTGAAGCCGCCTACCGCGTGCTGCACTGGGAGAAC GCACATGTGAAGCCGCCTACCGTGTGCTGCACTGGGAGAAC < 41bp 0.83917883007118 0.6381685982417 0.403086 0.5151723 prediction 0.402020463658961 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99508084 chr10:99508086 synonymous SNV . 0 23 hm5C_associated_SNPs_98149 1 0 1 3 2 ZFYVE27 chr10:99508026 3'AG 99508026 Downstream 61bp
chr10 99508086 99508086 1 + C T rs116366646 99508084 + 99508064 99508104 41 GCACATGTGAAGCCGCCTACCGCGTGCTGCACTGGGAGAAC GCACATGTGAAGCCGCCTACCGTGTGCTGCACTGGGAGAAC < 41bp 0.83917883007118 0.6381685982417 0.403086 0.5151723 prediction 0.402020463658961 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99508084 chr10:99508086 synonymous SNV . 0 23 hm5C_associated_SNPs_98149 1 0 1 3 2 ZFYVE27 chr10:99508121 5'GT 99508121 Upstream 36bp
chr6 12292655 12292655 1 + G T COAD 12292653 + 12292633 12292673 41 AGTCCACCCTGGCGGCTCCGCCGGTCCAAGCGCTGCTCCTG AGTCCACCCTGGCGGCTCCGCCTGTCCAAGCGCTGCTCCTG < 41bp 0.701009028648619 0.316483451884697 0.89496773 0.17190951 prediction 0.402018057297238 Functional Loss - EDN1 ENSG00000078401 CDS Human protein_coding chr6:12292653 chr6:12292655 nonsynonymous SNV 0.980 5 23 hm5C_associated_SNPs_98151 0 0 0 0 3 EDN1 chr6:12292574 3'AG 12292574 Downstream 82bp
chr6 12292655 12292655 1 + G T COAD 12292653 + 12292633 12292673 41 AGTCCACCCTGGCGGCTCCGCCGGTCCAAGCGCTGCTCCTG AGTCCACCCTGGCGGCTCCGCCTGTCCAAGCGCTGCTCCTG < 41bp 0.701009028648619 0.316483451884697 0.89496773 0.17190951 prediction 0.402018057297238 Functional Loss - EDN1 ENSG00000078401 CDS Human protein_coding chr6:12292653 chr6:12292655 nonsynonymous SNV 0.980 5 23 hm5C_associated_SNPs_98151 0 0 0 0 3 EDN1 chr6:12292577 3'AG 12292577 Downstream 79bp
chr6 12292655 12292655 1 + G T COAD 12292653 + 12292633 12292673 41 AGTCCACCCTGGCGGCTCCGCCGGTCCAAGCGCTGCTCCTG AGTCCACCCTGGCGGCTCCGCCTGTCCAAGCGCTGCTCCTG < 41bp 0.701009028648619 0.316483451884697 0.89496773 0.17190951 prediction 0.402018057297238 Functional Loss - EDN1 ENSG00000078401 CDS Human protein_coding chr6:12292653 chr6:12292655 nonsynonymous SNV 0.980 5 23 hm5C_associated_SNPs_98151 0 0 0 0 3 EDN1 chr6:12292742 5'GT 12292742 Upstream 88bp
chr16 19485537 19485537 1 + A T LUAD 19485533 + 19485513 19485553 41 CTGGCCGTGCCATGCATCTACTCCATGTTCAGGCTTGTGGA CTGGCCGTGCCATGCATCTACTCCTTGTTCAGGCTTGTGGA < 41bp 0.701006313346486 0.332804834643597 0.94032747 0.08810052 prediction 0.402012626692972 Functional Loss - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19485533 chr16:19485537 nonsynonymous SNV 0.222 0 25 hm5C_associated_SNPs_98152 0 0 0 0 2 TMC5 chr16:19485447 3'AG 19485447 Downstream 91bp
chr16 19485537 19485537 1 + A T LUAD 19485533 + 19485513 19485553 41 CTGGCCGTGCCATGCATCTACTCCATGTTCAGGCTTGTGGA CTGGCCGTGCCATGCATCTACTCCTTGTTCAGGCTTGTGGA < 41bp 0.701006313346486 0.332804834643597 0.94032747 0.08810052 prediction 0.402012626692972 Functional Loss - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19485533 chr16:19485537 nonsynonymous SNV 0.222 0 25 hm5C_associated_SNPs_98152 0 0 0 0 2 TMC5 chr16:19485598 5'GT 19485598 Upstream 62bp
chr3 132071611 132071611 1 + C T COAD 132071608 + 132071588 132071628 41 CAGATGGCGCTAGATGTTTACAACGGACTCCTTCCTCCCTA CAGATGGCGCTAGATGTTTACAATGGACTCCTTCCTCCCTA < 41bp 0.759535545442484 0.558529612125366 0.13874593 0.1007624 prediction 0.402011866634237 Functional Loss - ACPP ENSG00000014257 CDS Human protein_coding chr3:132071608 chr3:132071611 synonymous SNV . 0 24 hm5C_associated_SNPs_98153 0 0 0 0 2 ACPP chr3:132071564 3'AG 132071564 Downstream 48bp
chr3 132071611 132071611 1 + C T COAD 132071608 + 132071588 132071628 41 CAGATGGCGCTAGATGTTTACAACGGACTCCTTCCTCCCTA CAGATGGCGCTAGATGTTTACAATGGACTCCTTCCTCCCTA < 41bp 0.759535545442484 0.558529612125366 0.13874593 0.1007624 prediction 0.402011866634237 Functional Loss - ACPP ENSG00000014257 CDS Human protein_coding chr3:132071608 chr3:132071611 synonymous SNV . 0 24 hm5C_associated_SNPs_98153 0 0 0 0 2 ACPP chr3:132071667 5'GT 132071667 Upstream 57bp
chr7 99702946 99702946 1 + C T UCEC 99702943 + 99702923 99702963 41 AATTTGAGTCTCATCGAATCCTCCGCTTGCAACCACCTCAG AATTTGAGTCTCATCGAATCCTCTGCTTGCAACCACCTCAG < 41bp 0.790310295054386 0.589305226778885 0.045957148 0.098893106 prediction 0.402010136551002 Functional Loss - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99702943 chr7:99702946 nonsynonymous SNV 0.970 4 24 hm5C_associated_SNPs_98154 0 0 0 0 2 AP4M1 chr7:99702863 3'AG 99702863 Downstream 84bp
chr7 99702946 99702946 1 + C T UCEC 99702943 + 99702923 99702963 41 AATTTGAGTCTCATCGAATCCTCCGCTTGCAACCACCTCAG AATTTGAGTCTCATCGAATCCTCTGCTTGCAACCACCTCAG < 41bp 0.790310295054386 0.589305226778885 0.045957148 0.098893106 prediction 0.402010136551002 Functional Loss - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99702943 chr7:99702946 nonsynonymous SNV 0.970 4 24 hm5C_associated_SNPs_98154 0 0 0 0 2 AP4M1 chr7:99702969 5'GT 99702969 Upstream 24bp
chr12 12232586 12232586 1 + G T GBM 12232582 + 12232562 12232602 41 CGCCTGCCAAGGTCTCTGCTCAGGGTCAAAGGACGTTGGAA CGCCTGCCAAGGTCTCTGCTCAGGTTCAAAGGACGTTGGAA < 41bp 0.747307573595947 0.546306239056565 0.91428155 0.8957577 prediction 0.402002669078765 Functional Loss - BCL2L14 ENSG00000121380 CDS Human protein_coding chr12:12232582 chr12:12232586 nonsynonymous SNV 0.006 3 25 hm5C_associated_SNPs_98157 0 0 0 3 1 BCL2L14 chr12:12232672 5'GT 12232672 Upstream 87bp
chr20 13052978 13052978 1 + G A SKCM 13052975 + 13052955 13052995 41 TACATGCGAATCAGAGACAACTGGAACCGGCCCATCTGCAG TACATGCGAATCAGAGACAACTGAAACCGGCCCATCTGCAG < 41bp 0.781346901944848 0.580345960672272 0.085911095 0.052855223 prediction 0.402001882545153 Functional Loss - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13052975 chr20:13052978 stopgain 0.996 1 24 hm5C_associated_SNPs_98158 0 0 0 0 2 SPTLC3 chr20:13052904 3'AG 13052904 Downstream 75bp
chr20 13052978 13052978 1 + G A SKCM 13052975 + 13052955 13052995 41 TACATGCGAATCAGAGACAACTGGAACCGGCCCATCTGCAG TACATGCGAATCAGAGACAACTGAAACCGGCCCATCTGCAG < 41bp 0.781346901944848 0.580345960672272 0.085911095 0.052855223 prediction 0.402001882545153 Functional Loss - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13052975 chr20:13052978 stopgain 0.996 1 24 hm5C_associated_SNPs_98158 0 0 0 0 2 SPTLC3 chr20:13053058 5'GT 13053058 Upstream 81bp
chr7 141315347 141315347 1 + A T PRAD 141315345 + 141315325 141315365 41 TTGAGTCATACCCTCTTTGCCGAAAGTGGAAACAAAGTCCA TTGAGTCATACCCTCTTTGCCGTAAGTGGAAACAAAGTCCA < 41bp 0.730903888708475 0.529903370677497 0.12696132 0.09714341 prediction 0.402001036061955 Functional Loss - AGK ENSG00000006530 CDS Human protein_coding chr7:141315345 chr7:141315347 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_98160 0 0 1 0 2 AGK chr7:141315271 3'AG 141315271 Downstream 77bp
chr7 141315347 141315347 1 + A T PRAD 141315345 + 141315325 141315365 41 TTGAGTCATACCCTCTTTGCCGAAAGTGGAAACAAAGTCCA TTGAGTCATACCCTCTTTGCCGTAAGTGGAAACAAAGTCCA < 41bp 0.730903888708475 0.529903370677497 0.12696132 0.09714341 prediction 0.402001036061955 Functional Loss - AGK ENSG00000006530 CDS Human protein_coding chr7:141315345 chr7:141315347 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_98160 0 0 1 0 2 AGK chr7:141315365 5'GT 141315365 Upstream 19bp
chr7 143029588 143029588 1 + G T SARC 143029584 + 143029564 143029604 41 CCACCAGGAATGGGTCAATTCATGGCTGGAGAGGTCAGCTG CCACCAGGAATGGGTCAATTCATGTCTGGAGAGGTCAGCTG < 41bp 0.701000090060812 0.485626029415787 0.36734894 0.1449241 prediction 0.402000180121624 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143029584 chr7:143029588 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_98161 0 0 0 0 2 CLCN1 chr7:143029512 3'AG 143029512 Downstream 77bp
chr7 143029588 143029588 1 + G T SARC 143029584 + 143029564 143029604 41 CCACCAGGAATGGGTCAATTCATGGCTGGAGAGGTCAGCTG CCACCAGGAATGGGTCAATTCATGTCTGGAGAGGTCAGCTG < 41bp 0.701000090060812 0.485626029415787 0.36734894 0.1449241 prediction 0.402000180121624 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143029584 chr7:143029588 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_98161 0 0 0 0 2 CLCN1 chr7:143029596 5'GT 143029596 Upstream 9bp
chrX 49230902 49230902 1 + G T UCEC 49230898 + 49230878 49230918 41 GGAGATGGACCCGCCAAATCCAGAGGAGGTGAAAACGCCTG GGAGATGGACCCGCCAAATCCAGATGAGGTGAAAACGCCTG < 41bp 0.728893613958586 0.527893897170715 0.92729497 0.9112947 prediction 0.401999433575742 Functional Loss - GAGE2C;GAGE2D ENSG00000236249 CDS Human other chrX:49230898 chrX:49230902 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_98162 0 0 0 0 1 GAGE2C;GAGE2D chrX:49230924 5'GT 49230924 Upstream 23bp
chr4 47408896 47408896 1 + G A rs150598937 47408893 + 47408873 47408913 41 AGAAAAAGGGAGCTAGCAAACAAGACCAGAGTGCCAATGAG AGAAAAAGGGAGCTAGCAAACAAAACCAGAGTGCCAATGAG < 41bp 0.700996179808361 0.477563344016668 0.22056106 0.2544728 prediction 0.401992359616722 Functional Loss - GABRB1 ENSG00000163288 CDS Human protein_coding chr4:47408893 chr4:47408896 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_98164 0 0 0 0 1 GABRB1 chr4:47408943 5'GT 47408943 Upstream 48bp
chr19 49913125 49913125 1 + G A LUSC 49913122 + 49913102 49913142 41 GTTTCCATCTGAAGCCCCAGCTGGGGGACAGGTGAGCACAG GTTTCCATCTGAAGCCCCAGCTGAGGGACAGGTGAGCACAG < 41bp 0.832692930399423 0.631700674293324 0.8496008 0.46005642 prediction 0.401984512212199 Functional Loss - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49913122 chr19:49913125 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_98167 0 0 0 0 1 CCDC155 chr19:49913132 5'GT 49913132 Upstream 8bp
chr8 143603398 143603398 1 + G T THCA 143603394 + 143603374 143603414 41 TCCTTCTGCTGGGTGCTCACCGAGGCCTGGCAGTCCTACAT TCCTTCTGCTGGGTGCTCACCGAGTCCTGGCAGTCCTACAT < 41bp 0.722905742434635 0.521913639711668 0.90518224 0.49658778 prediction 0.401984205445934 Functional Loss - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143603394 chr8:143603398 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_98168 0 0 0 0 2 ADGRB1 chr8:143603326 3'AG 143603326 Downstream 73bp
chr8 143603398 143603398 1 + G T THCA 143603394 + 143603374 143603414 41 TCCTTCTGCTGGGTGCTCACCGAGGCCTGGCAGTCCTACAT TCCTTCTGCTGGGTGCTCACCGAGTCCTGGCAGTCCTACAT < 41bp 0.722905742434635 0.521913639711668 0.90518224 0.49658778 prediction 0.401984205445934 Functional Loss - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143603394 chr8:143603398 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_98168 0 0 0 0 2 ADGRB1 chr8:143603476 5'GT 143603476 Upstream 79bp
chr1 109777925 109777925 1 + C T UCEC 109777922 + 109777902 109777942 41 AGCAGCCCATTGCTGCCCTGCACCGGGATGAGTGGCTCCGG AGCAGCCCATTGCTGCCCTGCACTGGGATGAGTGGCTCCGG < 41bp 0.725634754312178 0.524643205442468 0.17526188 0.14518175 prediction 0.401983097739421 Functional Loss - SARS ENSG00000031698 CDS Human protein_coding chr1:109777922 chr1:109777925 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_98169 0 0 1 0 1 SARS chr1:109777832 3'AG 109777832 Downstream 94bp
chr16 28509238 28509238 1 + C T STAD 28509235 + 28509215 28509255 41 ACACCAGGCCCCTGCAGAAGCTGCGCCGGAGTCAGTCGGGG ACACCAGGCCCCTGCAGAAGCTGTGCCGGAGTCAGTCGGGG < 41bp 0.701319595701781 0.500331706410431 0.41153282 0.35370654 prediction 0.401975778582701 Functional Loss - APOBR ENSG00000184730 CDS Human protein_coding chr16:28509235 chr16:28509238 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_98172 0 0 0 0 1 APOBR chr16:28509317 5'GT 28509317 Upstream 80bp
chr2 44099378 44099378 1 + G A LGG 44099375 + 44099355 44099395 41 CTCCCAGCAGCGTGACCCCACTAGACACCAACTGCCTCCCG CTCCCAGCAGCGTGACCCCACTAAACACCAACTGCCTCCCG < 41bp 0.836479497111214 0.6354942089711 0.0728735 0.10210556 prediction 0.401970576280229 Functional Loss - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44099375 chr2:44099378 nonsynonymous SNV 0.028 1 24 hm5C_associated_SNPs_98173 0 0 0 0 3 ABCG8 chr2:44099362 3'AG 44099362 Downstream 17bp
chr2 44099378 44099378 1 + G A LGG 44099375 + 44099355 44099395 41 CTCCCAGCAGCGTGACCCCACTAGACACCAACTGCCTCCCG CTCCCAGCAGCGTGACCCCACTAAACACCAACTGCCTCCCG < 41bp 0.836479497111214 0.6354942089711 0.0728735 0.10210556 prediction 0.401970576280229 Functional Loss - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44099375 chr2:44099378 nonsynonymous SNV 0.028 1 24 hm5C_associated_SNPs_98173 0 0 0 0 3 ABCG8 chr2:44099365 3'AG 44099365 Downstream 14bp
chr2 44099378 44099378 1 + G A LGG 44099375 + 44099355 44099395 41 CTCCCAGCAGCGTGACCCCACTAGACACCAACTGCCTCCCG CTCCCAGCAGCGTGACCCCACTAAACACCAACTGCCTCCCG < 41bp 0.836479497111214 0.6354942089711 0.0728735 0.10210556 prediction 0.401970576280229 Functional Loss - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44099375 chr2:44099378 nonsynonymous SNV 0.028 1 24 hm5C_associated_SNPs_98173 0 0 0 0 3 ABCG8 chr2:44099445 5'GT 44099445 Upstream 68bp
chr11 10879908 10879908 1 + G A rs191136926 10879905 + 10879885 10879925 41 ATGCAGATTCCTGGGTACTGCCAGATACGGTTGGTGATCTT ATGCAGATTCCTGGGTACTGCCAAATACGGTTGGTGATCTT < 41bp 0.700976487104546 0.476285577192808 0.8551154 0.8801316 prediction 0.401952974209092 Functional Loss - ZBED5-AS1 ENSG00000247271 ncRNA_exonic Human antisense chr11:10879905 chr11:10879908 . . 0 24 hm5C_associated_SNPs_98182 0 0 1 0 1 ZBED5-AS1 chr11:10879913 5'GT 10879913 Upstream 6bp
chr1 6269021 6269021 1 + C T rs114798118 6269019 + 6268999 6269039 41 GCGACGAGACGCACCGAGCACGCATGTTCGCGCGCCACGAC GCGACGAGACGCACCGAGCACGTATGTTCGCGCGCCACGAC < 41bp 0.700972281727812 0.433514262971825 0.30251384 0.2728114 prediction 0.401944563455624 Functional Loss - RNF207 ENSG00000158286 CDS Human protein_coding chr1:6269019 chr1:6269021 synonymous SNV . 0 23 hm5C_associated_SNPs_98186 0 0 0 0 1 RNF207 chr1:6269085 5'GT 6269085 Upstream 65bp
chr13 113783855 113783855 1 + G A COAD 113783852 + 113783832 113783872 41 AAGAGATGAAGAAAGGACACCTCGAAAGAGAGTGCATGGAA AAGAGATGAAGAAAGGACACCTCAAAAGAGAGTGCATGGAA < 41bp 0.817368281824668 0.616397876644444 0.2649337 0.14386621 prediction 0.401940810360448 Functional Loss - F10 ENSG00000126218 CDS Human protein_coding chr13:113783852 chr13:113783855 nonsynonymous SNV 0.029 4 24 hm5C_associated_SNPs_98188 0 0 1 0 1 F10 chr13:113783926 5'GT 113783926 Upstream 72bp
chr12 123332641 123332641 1 + C T SARC 123332638 + 123332618 123332658 41 CCGTGAAGGAGAAGCACGCCCGGCGTATCCTTGGCCGGCTC CCGTGAAGGAGAAGCACGCCCGGTGTATCCTTGGCCGGCTC < 41bp 0.73037816433212 0.52941200114842 0.84077716 0.8242438 prediction 0.4019323263674 Functional Loss - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123332638 chr12:123332641 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_98195 0 0 0 0 2 HIP1R chr12:123332578 3'AG 123332578 Downstream 64bp
chr12 123332641 123332641 1 + C T SARC 123332638 + 123332618 123332658 41 CCGTGAAGGAGAAGCACGCCCGGCGTATCCTTGGCCGGCTC CCGTGAAGGAGAAGCACGCCCGGTGTATCCTTGGCCGGCTC < 41bp 0.73037816433212 0.52941200114842 0.84077716 0.8242438 prediction 0.4019323263674 Functional Loss - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123332638 chr12:123332641 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_98195 0 0 0 0 2 HIP1R chr12:123332641 5'GT 123332641 Upstream 1bp
chr17 76137013 76137013 1 + A T STAD 76137011 + 76136991 76137031 41 GCCCCAAGTACCCTGCCTCCCAAGCTTCGCGCCCGCAGTCC GCCCCAAGTACCCTGCCTCCCATGCTTCGCGCCCGCAGTCC < 41bp 0.705329563108518 0.504364045974879 0.17996934 0.059586674 prediction 0.401931034267277 Functional Loss - TMC8 ENSG00000167895 CDS Human protein_coding chr17:76137011 chr17:76137013 nonsynonymous SNV 0.213 1 23 hm5C_associated_SNPs_98196 0 0 0 0 1 TMC8 chr17:76136915 3'AG 76136915 Downstream 99bp
chr22 18066189 18066189 1 + C T LUSC 18066186 + 18066166 18066206 41 ACGCCTGTTCCCATAGGATGCAGCGGAACCTGAAGATGGAG ACGCCTGTTCCCATAGGATGCAGTGGAACCTGAAGATGGAG < 41bp 0.700964048787454 0.499785326723596 0.8131341 0.63335353 prediction 0.401928097574908 Functional Loss - SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18066186 chr22:18066189 nonsynonymous SNV 0.864 2 24 hm5C_associated_SNPs_98198 0 0 0 0 1 SLC25A18 chr22:18066182 3'AG 18066182 Downstream 8bp
chr11 8119372 8119372 1 + C T STAD 8119369 + 8119349 8119389 41 GGGACAGCTATATCGGGAAACTGCGGTACTAGCATTCCCCC GGGACAGCTATATCGGGAAACTGTGGTACTAGCATTCCCCC < 41bp 0.700958564179142 0.485334840645715 0.4536578 0.3136208 prediction 0.401917128358284 Functional Loss - TUB ENSG00000166402 CDS Human protein_coding chr11:8119369 chr11:8119372 nonsynonymous SNV 0.977 5 24 hm5C_associated_SNPs_98201 0 0 0 0 1 TUB chr11:8119373 5'GT 8119373 Upstream 2bp
chr18 29044159 29044159 1 + G A COAD 29044156 + 29044136 29044176 41 ATTTCACCAATCAGTTATCTCTCGATACCGAGTTCAGTCAA ATTTCACCAATCAGTTATCTCTCAATACCGAGTTCAGTCAA < 41bp 0.811425731017555 0.610471653281351 0.9166648 0.11508128 prediction 0.401908155472407 Functional Loss - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29044156 chr18:29044159 nonsynonymous SNV 0.231 0 24 hm5C_associated_SNPs_98205 0 0 0 0 1 DSG3 chr18:29044074 3'AG 29044074 Downstream 86bp
chr16 70806018 70806018 1 - G A UCEC 70806021 - 70806001 70806041 41 TAGCGGCATCAGTGTCTTCACTGCAGCCAGGTAAGTGGCTT TAGCGGCATCAGTGTCTTCACTGTAGCCAGGTAAGTGGCTT < 41bp 0.78307700397068 0.582123205466464 0.14828172 0.088846296 prediction 0.401907597008432 Functional Loss - VAC14 ENSG00000103043 CDS Human protein_coding chr16:70806021 chr16:70806018 nonsynonymous SNV 0.972 0 24 hm5C_associated_SNPs_98206 0 0 1 0 2 VAC14 chr16:70806012 5'GT 70806012 Upstream 7bp
chr16 70806018 70806018 1 - G A UCEC 70806021 - 70806001 70806041 41 TAGCGGCATCAGTGTCTTCACTGCAGCCAGGTAAGTGGCTT TAGCGGCATCAGTGTCTTCACTGTAGCCAGGTAAGTGGCTT < 41bp 0.78307700397068 0.582123205466464 0.14828172 0.088846296 prediction 0.401907597008432 Functional Loss - VAC14 ENSG00000103043 CDS Human protein_coding chr16:70806021 chr16:70806018 nonsynonymous SNV 0.972 0 24 hm5C_associated_SNPs_98206 0 0 1 0 2 VAC14 chr16:70806075 3'AG 70806075 Downstream 58bp
chr3 97503872 97503872 1 + G A UCEC 97503869 + 97503849 97503889 41 TGGTTGTGGCCAAAGAAGAACTCGATACTCTTCTGAATCAT TGGTTGTGGCCAAAGAAGAACTCAATACTCTTCTGAATCAT < 41bp 0.794028681788614 0.593078831030389 0.886096 0.44411686 prediction 0.401899701516448 Functional Loss - ARL6 ENSG00000113966 CDS Human protein_coding chr3:97503869 chr3:97503872 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_98207 0 0 0 1 2 ARL6 chr3:97503799 3'AG 97503799 Downstream 74bp
chr3 97503872 97503872 1 + G A UCEC 97503869 + 97503849 97503889 41 TGGTTGTGGCCAAAGAAGAACTCGATACTCTTCTGAATCAT TGGTTGTGGCCAAAGAAGAACTCAATACTCTTCTGAATCAT < 41bp 0.794028681788614 0.593078831030389 0.886096 0.44411686 prediction 0.401899701516448 Functional Loss - ARL6 ENSG00000113966 CDS Human protein_coding chr3:97503869 chr3:97503872 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_98207 0 0 0 1 2 ARL6 chr3:97503893 5'GT 97503893 Upstream 22bp
chr17 4846490 4846490 1 + G A UCEC 4846487 + 4846467 4846507 41 TTCCCAGGGCTCGGGTGCTTCTGGTTCCAGACAATACCTTC TTCCCAGGGCTCGGGTGCTTCTGATTCCAGACAATACCTTC < 41bp 0.822071679405867 0.621123569174039 0.28431264 0.22410834 prediction 0.401896220463656 Functional Loss - RNF167 ENSG00000108523 CDS Human protein_coding chr17:4846487 chr17:4846490 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_98208 0 0 1 0 2 RNF167 chr17:4846474 3'AG 4846474 Downstream 17bp
chr17 4846490 4846490 1 + G A UCEC 4846487 + 4846467 4846507 41 TTCCCAGGGCTCGGGTGCTTCTGGTTCCAGACAATACCTTC TTCCCAGGGCTCGGGTGCTTCTGATTCCAGACAATACCTTC < 41bp 0.822071679405867 0.621123569174039 0.28431264 0.22410834 prediction 0.401896220463656 Functional Loss - RNF167 ENSG00000108523 CDS Human protein_coding chr17:4846487 chr17:4846490 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_98208 0 0 1 0 2 RNF167 chr17:4846579 5'GT 4846579 Upstream 90bp
chr4 79522685 79522685 1 + C T rs5949 79522682 + 79522662 79522702 41 AGTTAATTGTGTGAGGAACACGCCGGCCTTTTTAGCCGAAA AGTTAATTGTGTGAGGAACACGCTGGCCTTTTTAGCCGAAA < 41bp 0.775683314232852 0.574736343779318 0.21769518 0.09391436 prediction 0.401893940907068 Functional Loss - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79522682 chr4:79522685 nonsynonymous SNV 0.224 4 24 hm5C_associated_SNPs_98209 0 0 1 0 2 ANXA3 chr4:79522664 3'AG 79522664 Downstream 22bp
chr4 79522685 79522685 1 + C T rs5949 79522682 + 79522662 79522702 41 AGTTAATTGTGTGAGGAACACGCCGGCCTTTTTAGCCGAAA AGTTAATTGTGTGAGGAACACGCTGGCCTTTTTAGCCGAAA < 41bp 0.775683314232852 0.574736343779318 0.21769518 0.09391436 prediction 0.401893940907068 Functional Loss - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79522682 chr4:79522685 nonsynonymous SNV 0.224 4 24 hm5C_associated_SNPs_98209 0 0 1 0 2 ANXA3 chr4:79522722 5'GT 79522722 Upstream 38bp
chr20 31889060 31889060 1 + G A SKCM 31889057 + 31889037 31889077 41 AGGCCAAGTTGTTGGACTCACAGGGAAAGGTGACCAAGTGG AGGCCAAGTTGTTGGACTCACAGAGAAAGGTGACCAAGTGG < 41bp 0.828096261812788 0.627152926507378 0.90699524 0.68461245 prediction 0.401886670610821 Functional Loss - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31889057 chr20:31889060 nonsynonymous SNV 0.311 2 24 hm5C_associated_SNPs_98211 0 0 0 0 1 BPIFB1 chr20:31889039 3'AG 31889039 Downstream 22bp
chr9 100070324 100070324 1 + G A LUSC 100070321 + 100070301 100070341 41 CCTGGACGACGGCTTCCCGGCAGGGGCATCCAGCCAGCGGC CCTGGACGACGGCTTCCCGGCAGAGGCATCCAGCCAGCGGC < 41bp 0.841396386849718 0.640453166139875 0.8673194 0.6384429 prediction 0.401886441419687 Functional Loss - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100070321 chr9:100070324 synonymous SNV . 0 24 hm5C_associated_SNPs_98212 0 0 0 0 2 CCDC180 chr9:100070265 3'AG 100070265 Downstream 60bp
chr9 100070324 100070324 1 + G A LUSC 100070321 + 100070301 100070341 41 CCTGGACGACGGCTTCCCGGCAGGGGCATCCAGCCAGCGGC CCTGGACGACGGCTTCCCGGCAGAGGCATCCAGCCAGCGGC < 41bp 0.841396386849718 0.640453166139875 0.8673194 0.6384429 prediction 0.401886441419687 Functional Loss - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100070321 chr9:100070324 synonymous SNV . 0 24 hm5C_associated_SNPs_98212 0 0 0 0 2 CCDC180 chr9:100070414 5'GT 100070414 Upstream 91bp
chr2 131904286 131904286 1 + G T LUAD 131904284 + 131904264 131904304 41 ACAACGACAGCGACCTGGCACTGGGCATGCTGGCAGGAGCA ACAACGACAGCGACCTGGCACTTGGCATGCTGGCAGGAGCA < 41bp 0.700939050246027 0.389418329518229 0.29591775 0.12851247 prediction 0.401878100492053 Functional Loss - PLEKHB2 ENSG00000115762 CDS Human protein_coding chr2:131904284 chr2:131904286 nonsynonymous SNV 0.833 1 23 hm5C_associated_SNPs_98215 0 0 1 0 1 PLEKHB2 chr2:131904210 3'AG 131904210 Downstream 77bp
chr5 68417643 68417643 1 + C T rs164578 68417641 + 68417621 68417661 41 CATCTGATCACAGCCATTCACACCATATGCATGGACACAGT CATCTGATCACAGCCATTCACATCATATGCATGGACACAGT < 41bp 0.888976916225908 0.688037896106955 0.037582695 0.06581172 prediction 0.401878040237905 Functional Loss - SLC30A5 ENSG00000145740 CDS Human protein_coding chr5:68417641 chr5:68417643 synonymous SNV . 0 23 hm5C_associated_SNPs_98216 0 0 0 1 2 SLC30A5 chr5:68417574 3'AG 68417574 Downstream 70bp
chr5 68417643 68417643 1 + C T rs164578 68417641 + 68417621 68417661 41 CATCTGATCACAGCCATTCACACCATATGCATGGACACAGT CATCTGATCACAGCCATTCACATCATATGCATGGACACAGT < 41bp 0.888976916225908 0.688037896106955 0.037582695 0.06581172 prediction 0.401878040237905 Functional Loss - SLC30A5 ENSG00000145740 CDS Human protein_coding chr5:68417641 chr5:68417643 synonymous SNV . 0 23 hm5C_associated_SNPs_98216 0 0 0 1 2 SLC30A5 chr5:68417722 5'GT 68417722 Upstream 80bp
chr19 19612198 19612198 1 + C T LUAD 19612195 + 19612175 19612215 41 GCACAGGCCAAGGCCGAGCCCACCGCTGCCCCACACCCCGT GCACAGGCCAAGGCCGAGCCCACTGCTGCCCCACACCCCGT < 41bp 0.729453098705022 0.528521583175808 0.3703075 0.55094594 prediction 0.401863031058427 Functional Loss - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19612195 chr19:19612198 synonymous SNV . 0 24 hm5C_associated_SNPs_98217 0 0 1 0 1 GATAD2A chr19:19612225 5'GT 19612225 Upstream 28bp
chr2 139316739 139316739 1 + G A CESC 139316736 + 139316716 139316756 41 GCAGTTTTTTCGTGAGAGGACAAGAATTTAAAGCTCATAAA GCAGTTTTTTCGTGAGAGGACAAAAATTTAAAGCTCATAAA < 41bp 0.700928861119266 0.470292618697416 0.12337348 0.08969143 prediction 0.401857722238531 Functional Loss - SPOPL ENSG00000144228 CDS Human protein_coding chr2:139316736 chr2:139316739 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_98223 0 0 1 0 1 SPOPL chr2:139316769 5'GT 139316769 Upstream 31bp
chr20 34053882 34053882 1 + G T UCEC 34053878 + 34053858 34053898 41 GTGCAGGTGTGAGAGTCTAGCAGAGGTGAACACCCAGCTTC GTGCAGGTGTGAGAGTCTAGCAGATGTGAACACCCAGCTTC < 41bp 0.70092856650413 0.491215357723501 0.93410164 0.8818319 prediction 0.401857133008261 Functional Loss - CEP250 ENSG00000126001 CDS Human protein_coding chr20:34053878 chr20:34053882 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_98224 0 0 1 0 2 CEP250 chr20:34053859 3'AG 34053859 Downstream 24bp
chr20 34053882 34053882 1 + G T UCEC 34053878 + 34053858 34053898 41 GTGCAGGTGTGAGAGTCTAGCAGAGGTGAACACCCAGCTTC GTGCAGGTGTGAGAGTCTAGCAGATGTGAACACCCAGCTTC < 41bp 0.70092856650413 0.491215357723501 0.93410164 0.8818319 prediction 0.401857133008261 Functional Loss - CEP250 ENSG00000126001 CDS Human protein_coding chr20:34053878 chr20:34053882 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_98224 0 0 1 0 2 CEP250 chr20:34053864 3'AG 34053864 Downstream 19bp
chr1 235505401 235505401 1 + C T UCEC 235505398 + 235505378 235505418 41 ATATTGAAGACAACTCAAAACTCCGACGTGGCTTTCCAGTG ATATTGAAGACAACTCAAAACTCTGACGTGGCTTTCCAGTG < 41bp 0.700910409128186 0.471379034080424 0.069536716 0.065131664 prediction 0.401820818256373 Functional Loss - GGPS1 ENSG00000152904 CDS Human protein_coding chr1:235505398 chr1:235505401 stopgain 0.978 1 24 hm5C_associated_SNPs_98234 0 0 1 0 1 GGPS1 chr1:235505326 3'AG 235505326 Downstream 76bp
chr22 37260123 37260123 1 + G A rs10854695 37260120 + 37260100 37260140 41 CTTCCGGATGATGTTGCCATCTCGGCCAACATTGCTGACAT CTTCCGGATGATGTTGCCATCTCAGCCAACATTGCTGACAT < 41bp 0.802428996993513 0.601519374787747 0.30953795 0.15031487 prediction 0.401819244411533 Functional Loss - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37260120 chr22:37260123 synonymous SNV . 0 24 hm5C_associated_SNPs_98235 2 0 0 0 2 NCF4 chr22:37260087 3'AG 37260087 Downstream 37bp
chr22 37260123 37260123 1 + G A rs10854695 37260120 + 37260100 37260140 41 CTTCCGGATGATGTTGCCATCTCGGCCAACATTGCTGACAT CTTCCGGATGATGTTGCCATCTCAGCCAACATTGCTGACAT < 41bp 0.802428996993513 0.601519374787747 0.30953795 0.15031487 prediction 0.401819244411533 Functional Loss - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37260120 chr22:37260123 synonymous SNV . 0 24 hm5C_associated_SNPs_98235 2 0 0 0 2 NCF4 chr22:37260171 5'GT 37260171 Upstream 49bp
chr5 112155002 112155002 1 + G A SKCM 112154999 + 112154979 112155019 41 GTGAAACCTGTTGGGAGTGGCAGGAAGCTCATGAACCAGGC GTGAAACCTGTTGGGAGTGGCAGAAAGCTCATGAACCAGGC < 41bp 0.700904855225656 0.481283149759136 0.86379516 0.22026098 prediction 0.401809710451312 Functional Loss - APC ENSG00000134982 CDS Human protein_coding chr5:112154999 chr5:112155002 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_98240 0 0 0 0 1 APC chr5:112155041 5'GT 112155041 Upstream 40bp
chr8 8102183 8102183 1 + G A rs112792199 8102180 + 8102160 8102200 41 CGCCAGCAAGATAGCAAAAGCAGGAAGAGAGCCAGCCGGAA CGCCAGCAAGATAGCAAAAGCAGAAAGAGAGCCAGCCGGAA < 41bp 0.736128979607393 0.535224868956553 0.4409418 0.19682083 prediction 0.401808221301679 Functional Loss - FAM86B3P ENSG00000173295;ENSG00000253981 ncRNA_exonic Human other chr8:8102180 chr8:8102183 . . 0 24 hm5C_associated_SNPs_98241 0 0 0 1 1 FAM86B3P chr8:8102107 3'AG 8102107 Downstream 77bp
chr15 58837954 58837954 1 + G A rs34351746 58837951 + 58837931 58837971 41 TTCCCATTAGGGCTGGATGCCGCGGGACCTTTGTTTGAGGG TTCCCATTAGGGCTGGATGCCGCAGGACCTTTGTTTGAGGG < 41bp 0.824596578125039 0.623692904444439 0.3523206 0.069104135 prediction 0.4018073473612 Functional Loss - LIPC ENSG00000166035 CDS Human protein_coding chr15:58837951 chr15:58837954 synonymous SNV . 0 24 hm5C_associated_SNPs_98242 1 0 1 0 1 LIPC chr15:58837941 3'AG 58837941 Downstream 14bp
chr14 89307480 89307480 1 + A C PAAD 89307476 + 89307456 89307496 41 GGAACAGGCTATCAGAACACCCAGAACCGCCTACACAGCCC GGAACAGGCTATCAGAACACCCAGCACCGCCTACACAGCCC < 41bp 0.700901458455105 0.279967066043522 0.052920282 0.024699867 prediction 0.401802916910209 Functional Loss - TTC8 ENSG00000165533 CDS Human protein_coding chr14:89307476 chr14:89307480 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_98245 0 0 1 0 2 TTC8 chr14:89307381 3'AG 89307381 Downstream 100bp
chr14 89307480 89307480 1 + A C PAAD 89307476 + 89307456 89307496 41 GGAACAGGCTATCAGAACACCCAGAACCGCCTACACAGCCC GGAACAGGCTATCAGAACACCCAGCACCGCCTACACAGCCC < 41bp 0.700901458455105 0.279967066043522 0.052920282 0.024699867 prediction 0.401802916910209 Functional Loss - TTC8 ENSG00000165533 CDS Human protein_coding chr14:89307476 chr14:89307480 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_98245 0 0 1 0 2 TTC8 chr14:89307540 5'GT 89307540 Upstream 61bp
chr1 156846300 156846300 1 + G T TGCT 156846296 + 156846276 156846316 41 GTGCGCTTCTTCGGCGTCTGCACCGAGGGCCGCCCCCTGCT GTGCGCTTCTTCGGCGTCTGCACCTAGGGCCGCCCCCTGCT < 41bp 0.770207557705619 0.569306884599078 0.09154731 0.054703772 prediction 0.401801346213082 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156846296 chr1:156846300 stopgain 0.994 1 25 hm5C_associated_SNPs_98247 0 0 0 0 1 NTRK1 chr1:156846364 5'GT 156846364 Upstream 65bp
chr10 6823368 6823368 1 + G A rs572949749 6823365 + 6823345 6823385 41 GCACATTGAACCAGATAGTCCTGGAATGTGGGAAAACAGAG GCACATTGAACCAGATAGTCCTGAAATGTGGGAAAACAGAG < 41bp 0.777774301215638 0.576876021857479 0.30541503 0.31526607 prediction 0.401796558716319 Functional Loss - LINC00707 ENSG00000238266 ncRNA_exonic Human lincRNA chr10:6823365 chr10:6823368 . . 0 24 hm5C_associated_SNPs_98248 0 0 0 0 1 LINC00707 chr10:6823448 5'GT 6823448 Upstream 81bp
chr2 97019076 97019076 1 + A T HNSC 97019072 + 97019052 97019092 41 CAGCAGTGTGCAGAAGATCGCCAGATCTGCCCTTCCCTGGC CAGCAGTGTGCAGAAGATCGCCAGTTCTGCCCTTCCCTGGC < 41bp 0.70089795969768 0.367317330991987 0.908468 0.35837263 prediction 0.401795919395361 Functional Loss - NCAPH ENSG00000121152 CDS Human protein_coding chr2:97019072 chr2:97019076 nonsynonymous SNV 0.994 3 25 hm5C_associated_SNPs_98249 0 0 1 0 2 NCAPH chr2:97019044 3'AG 97019044 Downstream 33bp
chr2 97019076 97019076 1 + A T HNSC 97019072 + 97019052 97019092 41 CAGCAGTGTGCAGAAGATCGCCAGATCTGCCCTTCCCTGGC CAGCAGTGTGCAGAAGATCGCCAGTTCTGCCCTTCCCTGGC < 41bp 0.70089795969768 0.367317330991987 0.908468 0.35837263 prediction 0.401795919395361 Functional Loss - NCAPH ENSG00000121152 CDS Human protein_coding chr2:97019072 chr2:97019076 nonsynonymous SNV 0.994 3 25 hm5C_associated_SNPs_98249 0 0 1 0 2 NCAPH chr2:97019135 5'GT 97019135 Upstream 60bp
chr16 30198425 30198425 1 + G T UCEC 30198423 + 30198403 30198443 41 GGCCATGCTGACACTGGGCCCAGAGGTGCACCCAGACACGA GGCCATGCTGACACTGGGCCCATAGGTGCACCCAGACACGA < 41bp 0.700897420586851 0.348394215345878 0.68551695 0.114263296 prediction 0.401794841173702 Functional Loss - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30198423 chr16:30198425 stopgain 0.979 1 23 hm5C_associated_SNPs_98251 0 0 0 1 1 CORO1A chr16:30198360 3'AG 30198360 Downstream 66bp
chr2 65248061 65248061 1 + G A rs144265531 65248058 + 65248038 65248078 41 CCCACCAGGGACCGGACCACCACGGTGGTGAATGTGGAAGG CCCACCAGGGACCGGACCACCACAGTGGTGAATGTGGAAGG < 41bp 0.795051028617031 0.594155802424258 0.44007522 0.3346125 prediction 0.401790452385548 Functional Loss - SLC1A4 ENSG00000115902 CDS Human protein_coding chr2:65248058 chr2:65248061 synonymous SNV . 0 24 hm5C_associated_SNPs_98255 0 0 1 0 1 SLC1A4 chr2:65248046 3'AG 65248046 Downstream 16bp
chr9 136323072 136323072 1 + G A HNSC 136323069 + 136323049 136323089 41 TTTGGGCCCTGGGGTGAAATCGTGAGCCCCTCGCTGAGTCC TTTGGGCCCTGGGGTGAAATCGTAAGCCCCTCGCTGAGTCC < 41bp 0.8184072306984 0.617512715165858 0.90918314 0.87051684 prediction 0.401789031065085 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136323069 chr9:136323072 synonymous SNV . 0 24 hm5C_associated_SNPs_98256 0 0 0 0 1 ADAMTS13 chr9:136323032 3'AG 136323032 Downstream 41bp
chr19 8326608 8326608 1 + C T rs114452930 8326605 + 8326585 8326625 41 ACATACTACGAGTCCATCAGCAACAGGGGCCCCTTCTTCGG ACATACTACGAGTCCATCAGCAATAGGGGCCCCTTCTTCGG < 41bp 0.742408807940348 0.541516965573349 0.2852518 0.32792705 prediction 0.401783684733998 Functional Loss - CERS4 ENSG00000090661 CDS Human protein_coding chr19:8326605 chr19:8326608 synonymous SNV . 0 24 hm5C_associated_SNPs_98259 0 0 1 0 1 CERS4 chr19:8326572 3'AG 8326572 Downstream 37bp
chr5 176297378 176297378 1 + C T OV 176297375 + 176297355 176297395 41 CTTGTCTCTCATCTAGTGGACGGCAGCTGGAGCCCGTGGAG CTTGTCTCTCATCTAGTGGACGGTAGCTGGAGCCCGTGGAG < 41bp 0.729898665617188 0.529008526091895 0.58505934 0.41708425 prediction 0.401780279050584 Functional Loss - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176297375 chr5:176297378 synonymous SNV . 0 24 hm5C_associated_SNPs_98262 0 0 0 0 1 UNC5A chr5:176297371 3'AG 176297371 Downstream 8bp
chr10 45480397 45480397 1 + C T CESC 45480394 + 45480374 45480414 41 CGGCGACACCGGTTCTCTATCAACGGCCACTTCTACAATCA CGGCGACACCGGTTCTCTATCAATGGCCACTTCTACAATCA < 41bp 0.732860248176209 0.531971746532472 0.8999852 0.2642128 prediction 0.401777003287473 Functional Loss - RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45480394 chr10:45480397 synonymous SNV . 0 24 hm5C_associated_SNPs_98264 0 0 1 0 1 RASSF4 chr10:45480418 5'GT 45480418 Upstream 22bp
chr2 137872806 137872806 1 + C T COAD 137872804 + 137872784 137872824 41 GTGTGGCGGTGGGATCCAGACCCGGGAGGTGTACTGTGCCC GTGTGGCGGTGGGATCCAGACCTGGGAGGTGTACTGTGCCC < 41bp 0.700886078268846 0.462548690485508 0.30246788 0.3053787 prediction 0.401772156537691 Functional Loss - THSD7B ENSG00000144229 CDS Human protein_coding chr2:137872804 chr2:137872806 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_98265 0 0 0 0 1 THSD7B chr2:137872863 5'GT 137872863 Upstream 58bp
chr2 137872807 137872807 1 + G A LUSC 137872804 + 137872784 137872824 41 GTGTGGCGGTGGGATCCAGACCCGGGAGGTGTACTGTGCCC GTGTGGCGGTGGGATCCAGACCCAGGAGGTGTACTGTGCCC < 41bp 0.700886078268846 0.489788608026085 0.30246788 0.1119189 prediction 0.401772156537691 Functional Loss - THSD7B ENSG00000144229 CDS Human protein_coding chr2:137872804 chr2:137872807 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_98266 0 0 0 0 1 THSD7B chr2:137872863 5'GT 137872863 Upstream 57bp
chr17 8248749 8248749 1 + G A UCEC 8248746 + 8248726 8248766 41 AATGTATCCATCCCCATAGGCTGGAGCTATTTCATTGGTTG AATGTATCCATCCCCATAGGCTGAAGCTATTTCATTGGTTG < 41bp 0.812052620019994 0.611167129211406 0.5963309 0.27353385 prediction 0.401770981617176 Functional Loss - ODF4 ENSG00000184650 CDS Human protein_coding chr17:8248746 chr17:8248749 stopgain 0.985 0 24 hm5C_associated_SNPs_98267 0 0 0 0 2 ODF4 chr17:8248661 3'AG 8248661 Downstream 89bp
chr17 8248749 8248749 1 + G A UCEC 8248746 + 8248726 8248766 41 AATGTATCCATCCCCATAGGCTGGAGCTATTTCATTGGTTG AATGTATCCATCCCCATAGGCTGAAGCTATTTCATTGGTTG < 41bp 0.812052620019994 0.611167129211406 0.5963309 0.27353385 prediction 0.401770981617176 Functional Loss - ODF4 ENSG00000184650 CDS Human protein_coding chr17:8248746 chr17:8248749 stopgain 0.985 0 24 hm5C_associated_SNPs_98267 0 0 0 0 2 ODF4 chr17:8248795 5'GT 8248795 Upstream 47bp
chr11 124746270 124746270 1 + G T rs527563280 124746268 + 124746248 124746288 41 CCCGCCTTCCTCGCGGGCAGCGGCGCAGCCTGCGGGGCGCT CCCGCCTTCCTCGCGGGCAGCGTCGCAGCCTGCGGGGCGCT < 41bp 0.700883249036048 0.33485952475424 0.8196951 0.35632572 prediction 0.401766498072096 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124746268 chr11:124746270 nonsynonymous SNV 0.104 3 23 hm5C_associated_SNPs_98269 0 0 0 0 1 ROBO3 chr11:124746356 5'GT 124746356 Upstream 87bp
chr14 68191299 68191299 1 + G A PRAD 68191296 + 68191276 68191316 41 GCAAGGAGACGGCCAGAGAGCTCGCTAGCCGAGGTAAGTGT GCAAGGAGACGGCCAGAGAGCTCACTAGCCGAGGTAAGTGT < 41bp 0.700882816181638 0.449386120735878 0.20212671 0.15291175 prediction 0.401765632363276 Functional Loss - RDH12 ENSG00000139988 CDS Human protein_coding chr14:68191296 chr14:68191299 nonsynonymous SNV 0.979 5 24 hm5C_associated_SNPs_98270 0 0 0 0 1 RDH12 chr14:68191308 5'GT 68191308 Upstream 10bp
chr5 149425088 149425088 1 + G A COAD 149425085 + 149425065 149425105 41 AATGTGGAGGACTTTTGGGCCACGATGGAGACAGAGGTGAT AATGTGGAGGACTTTTGGGCCACAATGGAGACAGAGGTGAT < 41bp 0.70088147596159 0.466496896522505 0.1088033 0.23649028 prediction 0.40176295192318 Functional Loss - HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149425085 chr5:149425088 synonymous SNV . 0 24 hm5C_associated_SNPs_98271 0 0 1 0 1 HMGXB3 chr5:149425029 3'AG 149425029 Downstream 60bp
chr2 71795434 71795434 1 + T C STAD 71795433 + 71795413 71795453 41 CGCCCCTCGGCCGGCTGGACCTGGGCTGGAGATTGGTTCGT CGCCCCTCGGCCGGCTGGACCCGGGCTGGAGATTGGTTCGT < 41bp 0.754796063989791 0.553916301553137 0.46754488 0.75462484 prediction 0.401759524873308 Functional Loss - DYSF ENSG00000135636 CDS Human protein_coding chr2:71795433 chr2:71795434 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_98275 0 0 0 0 1 DYSF chr2:71795468 5'GT 71795468 Upstream 35bp
chr3 53215505 53215505 1 + C T CESC 53215502 + 53215482 53215522 41 TGAGGACGAGGCCAAGTTCCCAACGATGAACCGCCGCGGAG TGAGGACGAGGCCAAGTTCCCAATGATGAACCGCCGCGGAG < 41bp 0.752776747373564 0.551898367091578 0.27190584 0.2908427 prediction 0.401756760563972 Functional Loss - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53215502 chr3:53215505 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_98278 0 0 1 0 1 PRKCD chr3:53215460 3'AG 53215460 Downstream 46bp
chr1 57378109 57378109 1 + A T LGG 57378107 + 57378087 57378127 41 CCACGAGGTGCTGCGGCACACAAGCCTGGGGCCTCTGGAGG CCACGAGGTGCTGCGGCACACATGCCTGGGGCCTCTGGAGG < 41bp 0.725354073391498 0.52448087728903 0.63127786 0.5077924 prediction 0.401746392204938 Functional Loss - C8A ENSG00000157131 CDS Human protein_coding chr1:57378107 chr1:57378109 nonsynonymous SNV 0.253 3 23 hm5C_associated_SNPs_98281 0 0 1 0 1 C8A chr1:57378076 3'AG 57378076 Downstream 34bp
chrX 148797297 148797297 1 + A T LUAD 148797293 + 148797273 148797313 41 GAACAGGCCAACCTGGAGGACAGGAGTCCCAGGAGAACCCA GAACAGGCCAACCTGGAGGACAGGTGTCCCAGGAGAACCCA < 41bp 0.896001943921961 0.69512947376596 0.2326374 0.29749566 prediction 0.401744940312002 Functional Loss - MAGEA11 ENSG00000185247 CDS Human protein_coding chrX:148797293 chrX:148797297 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_98282 0 0 0 0 1 MAGEA11 chrX:148797264 3'AG 148797264 Downstream 34bp
chr11 2335755 2335755 1 + G C HNSC 2335751 + 2335731 2335771 41 AGAAGTCTCCTTTCAGCCGTCTGGGGAGCACAGAGGCTGAC AGAAGTCTCCTTTCAGCCGTCTGGCGAGCACAGAGGCTGAC < 41bp 0.700872453179316 0.39651754859631 0.5703645 0.2695527 prediction 0.401744906358633 Functional Loss - TSPAN32 ENSG00000064201 CDS Human protein_coding chr11:2335751 chr11:2335755 nonsynonymous SNV 0.024 1 25 hm5C_associated_SNPs_98283 0 0 0 0 2 TSPAN32 chr11:2335715 3'AG 2335715 Downstream 41bp
chr11 2335755 2335755 1 + G C HNSC 2335751 + 2335731 2335771 41 AGAAGTCTCCTTTCAGCCGTCTGGGGAGCACAGAGGCTGAC AGAAGTCTCCTTTCAGCCGTCTGGCGAGCACAGAGGCTGAC < 41bp 0.700872453179316 0.39651754859631 0.5703645 0.2695527 prediction 0.401744906358633 Functional Loss - TSPAN32 ENSG00000064201 CDS Human protein_coding chr11:2335751 chr11:2335755 nonsynonymous SNV 0.024 1 25 hm5C_associated_SNPs_98283 0 0 0 0 2 TSPAN32 chr11:2335801 5'GT 2335801 Upstream 47bp
chr12 8290779 8290779 1 + G T LUSC 8290775 + 8290755 8290795 41 CCCAGTGATCCCAATGAGCGCTGCGTTGTGCTAAATTTTCG CCCAGTGATCCCAATGAGCGCTGCTTTGTGCTAAATTTTCG < 41bp 0.703979212357868 0.503110534487691 0.08707273 0.09668267 prediction 0.401737355740353 Functional Loss - CLEC4A ENSG00000111729 CDS Human protein_coding chr12:8290775 chr12:8290779 nonsynonymous SNV 0.011 3 25 hm5C_associated_SNPs_98286 0 0 0 0 1 CLEC4A chr12:8290736 3'AG 8290736 Downstream 44bp
chrX 109247314 109247314 1 + G A UCEC 109247311 + 109247291 109247331 41 GTAGCCCTGTGCCTGACCTTCGGGGTGGAGGTGGGCTTTAA GTAGCCCTGTGCCTGACCTTCGGAGTGGAGGTGGGCTTTAA < 41bp 0.825359038573571 0.624492444343347 0.93312 0.9096868 prediction 0.401733188460448 Functional Loss - TMEM164 ENSG00000157600 CDS Human protein_coding chrX:109247311 chrX:109247314 synonymous SNV . 0 24 hm5C_associated_SNPs_98288 0 0 1 0 1 TMEM164 chrX:109247392 5'GT 109247392 Upstream 79bp
chr19 36124919 36124919 1 + G A CESC 36124916 + 36124896 36124936 41 CACCCCCAGGCCTCATGGCTCTTGAGGTAAGCAGGGAGCCT CACCCCCAGGCCTCATGGCTCTTAAGGTAAGCAGGGAGCCT < 41bp 0.700866316045379 0.468332285252644 0.085399 0.07109928 prediction 0.401732632090758 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124916 chr19:36124919 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_98290 0 0 1 0 1 RBM42 chr19:36124921 5'GT 36124921 Upstream 3bp
chr17 40174451 40174451 1 + C T BLCA 40174448 + 40174428 40174468 41 ATCGAGACGCAGGAGGACATCTACGTGGGCTCCATTGAGAC ATCGAGACGCAGGAGGACATCTATGTGGGCTCCATTGAGAC < 41bp 0.79044151906065 0.589575915239819 0.42232865 0.5039967 prediction 0.401731207641662 Functional Loss - NKIRAS2 ENSG00000168256 CDS Human protein_coding chr17:40174448 chr17:40174451 synonymous SNV . 0 24 hm5C_associated_SNPs_98292 0 0 1 0 2 NKIRAS2 chr17:40174417 3'AG 40174417 Downstream 35bp
chr17 40174451 40174451 1 + C T BLCA 40174448 + 40174428 40174468 41 ATCGAGACGCAGGAGGACATCTACGTGGGCTCCATTGAGAC ATCGAGACGCAGGAGGACATCTATGTGGGCTCCATTGAGAC < 41bp 0.79044151906065 0.589575915239819 0.42232865 0.5039967 prediction 0.401731207641662 Functional Loss - NKIRAS2 ENSG00000168256 CDS Human protein_coding chr17:40174448 chr17:40174451 synonymous SNV . 0 24 hm5C_associated_SNPs_98292 0 0 1 0 2 NKIRAS2 chr17:40174490 5'GT 40174490 Upstream 40bp
chrX 153678260 153678260 1 + C T UCEC 153678257 + 153678237 153678277 41 AGCTTCTACGACTTCATCGTCACCAAGGCACGGGGGAAGAG AGCTTCTACGACTTCATCGTCACTAAGGCACGGGGGAAGAG < 41bp 0.777848851484281 0.576983279818711 0.08347741 0.0924077 prediction 0.401731143331139 Functional Loss - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153678257 chrX:153678260 synonymous SNV . 0 24 hm5C_associated_SNPs_98293 0 0 1 0 2 FAM50A chrX:153678231 3'AG 153678231 Downstream 30bp
chrX 153678260 153678260 1 + C T UCEC 153678257 + 153678237 153678277 41 AGCTTCTACGACTTCATCGTCACCAAGGCACGGGGGAAGAG AGCTTCTACGACTTCATCGTCACTAAGGCACGGGGGAAGAG < 41bp 0.777848851484281 0.576983279818711 0.08347741 0.0924077 prediction 0.401731143331139 Functional Loss - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153678257 chrX:153678260 synonymous SNV . 0 24 hm5C_associated_SNPs_98293 0 0 1 0 2 FAM50A chrX:153678279 5'GT 153678279 Upstream 20bp
chr11 114167419 114167419 1 + G A SKCM 114167416 + 114167396 114167436 41 CACCTTCTGAAAAATCTTTTCAAGATATTCTGCCTAGGTAA CACCTTCTGAAAAATCTTTTCAAAATATTCTGCCTAGGTAA < 41bp 0.700860890581466 0.448554536550621 0.12612092 0.119944185 prediction 0.401721781162932 Functional Loss - NNMT ENSG00000166741 CDS Human protein_coding chr11:114167416 chr11:114167419 synonymous SNV . 0 24 hm5C_associated_SNPs_98296 0 0 0 0 1 NNMT chr11:114167432 5'GT 114167432 Upstream 14bp
chr1 28864371 28864371 1 + C T SKCM 28864369 + 28864349 28864389 41 GTTTTCGCCTGGGGCATGGGCACCAACTACCAGCTGGGCAC GTTTTCGCCTGGGGCATGGGCATCAACTACCAGCTGGGCAC < 41bp 0.872734654952622 0.671875854336742 0.24193373 0.22782665 prediction 0.40171760123176 Functional Loss - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28864369 chr1:28864371 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_98297 0 0 1 0 1 RCC1 chr1:28864344 3'AG 28864344 Downstream 28bp
chr10 73111463 73111463 1 + C T STAD 73111460 + 73111440 73111480 41 ATTGTCTGCATGGTGATCCTCAGCGGTGCCTCCACTGTCTT ATTGTCTGCATGGTGATCCTCAGTGGTGCCTCCACTGTCTT < 41bp 0.750993197830702 0.550134461920889 0.91865474 0.75157535 prediction 0.401717471819627 Functional Loss - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73111460 chr10:73111463 synonymous SNV . 0 24 hm5C_associated_SNPs_98298 0 0 0 0 1 SLC29A3 chr10:73111545 5'GT 73111545 Upstream 83bp
chr7 120965481 120965481 1 + C T SKCM 120965478 + 120965458 120965498 41 GGAAAGGCACCCATGCAGCTCACCACTTGCCTCAGGGAGAC GGAAAGGCACCCATGCAGCTCACTACTTGCCTCAGGGAGAC < 41bp 0.711605189527278 0.510747347715599 0.0052753687 0.007472545 prediction 0.401715683623358 Functional Loss - WNT16 ENSG00000002745 CDS Human protein_coding chr7:120965478 chr7:120965481 synonymous SNV . 0 24 hm5C_associated_SNPs_98299 0 0 0 0 1 WNT16 chr7:120965534 5'GT 120965534 Upstream 54bp
chr1 63877651 63877651 1 + C T UCEC 63877648 + 63877628 63877668 41 GTTGTGGCTTCCTTCGTTCTCTGCTGGCTGCCATTCTTTAC GTTGTGGCTTCCTTCGTTCTCTGTTGGCTGCCATTCTTTAC < 41bp 0.777193049589063 0.576338415429134 0.024250984 0.034347087 prediction 0.401709268319858 Functional Loss - ALG6 ENSG00000088035 CDS Human protein_coding chr1:63877648 chr1:63877651 synonymous SNV . 0 24 hm5C_associated_SNPs_98301 0 0 1 4 1 ALG6 chr1:63877597 3'AG 63877597 Downstream 55bp
chr20 13782274 13782274 1 + C T COAD 13782271 + 13782251 13782291 41 TCCACACATTTCTCCTTTCACTGCTGTCAATGACCTGGGAC TCCACACATTTCTCCTTTCACTGTTGTCAATGACCTGGGAC < 41bp 0.749581463410269 0.54872762828822 0.30855355 0.24418178 prediction 0.4017076702441 Functional Loss - NDUFAF5 ENSG00000101247 CDS Human protein_coding chr20:13782271 chr20:13782274 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_98302 0 0 1 4 1 NDUFAF5 chr20:13782329 5'GT 13782329 Upstream 56bp
chr3 140277665 140277665 1 + C T LUAD 140277662 + 140277642 140277682 41 ATCAAGATTGTGAGCACCTTCGCCAAAACCGAAGCCCCCGG ATCAAGATTGTGAGCACCTTCGCTAAAACCGAAGCCCCCGG < 41bp 0.700850964358868 0.497254792508835 0.6257016 0.1849317 prediction 0.401701928717736 Functional Loss - CLSTN2 ENSG00000158258 CDS Human protein_coding chr3:140277662 chr3:140277665 synonymous SNV . 0 24 hm5C_associated_SNPs_98305 0 0 0 0 1 CLSTN2 chr3:140277699 5'GT 140277699 Upstream 35bp
chr11 119050500 119050500 1 + C T UCEC 119050497 + 119050477 119050517 41 TTTCGAGAGGAGGACTACTACAACGATGATGTTCTGGACCA TTTCGAGAGGAGGACTACTACAATGATGATGTTCTGGACCA < 41bp 0.752010028710205 0.55116140828224 0.1163179 0.093497604 prediction 0.40169724085593 Functional Loss - NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119050497 chr11:119050500 synonymous SNV . 0 24 hm5C_associated_SNPs_98307 0 0 1 0 1 NLRX1 chr11:119050402 3'AG 119050402 Downstream 99bp
chr19 41008109 41008109 1 + G A SKCM 41008106 + 41008086 41008126 41 CTGGCGGCTGAGCTGCTGGCCTGGATCCACCGCACCGTGGG CTGGCGGCTGAGCTGCTGGCCTGAATCCACCGCACCGTGGG < 41bp 0.700848214637036 0.456446125308887 0.20385462 0.10597885 prediction 0.401696429274073 Functional Loss - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41008106 chr19:41008109 stopgain 0.998 0 24 hm5C_associated_SNPs_98308 0 0 0 0 1 SPTBN4 chr19:41008035 3'AG 41008035 Downstream 75bp
chr1 230916329 230916329 1 + G A rs142590080 230916326 + 230916306 230916346 41 AGAAGCAAGACGTTCATCAACCTGAGAGAAGTCTCCGACCG AGAAGCAAGACGTTCATCAACCTAAGAGAAGTCTCCGACCG < 41bp 0.700843985151376 0.454070904664598 0.6161386 0.5495684 prediction 0.401687970302753 Functional Loss - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230916326 chr1:230916329 synonymous SNV . 0 24 hm5C_associated_SNPs_98312 0 0 0 0 1 CAPN9 chr1:230916246 3'AG 230916246 Downstream 84bp
chr3 160939120 160939120 1 + G A rs12490149 160939117 + 160939097 160939137 41 TTCTCTGTGGCGGAGACAGCCAGGTTGGCAGCTGACGGGAC TTCTCTGTGGCGGAGACAGCCAGATTGGCAGCTGACGGGAC < 41bp 0.798755677191083 0.597912574024432 0.93468785 0.92882085 prediction 0.401686206333301 Functional Loss - NMD3 ENSG00000169251 splicing Human protein_coding chr3:160939117 chr3:160939120 . . 0 24 hm5C_associated_SNPs_98313 0 0 1 0 1 NMD3 chr3:160939197 5'GT 160939197 Upstream 78bp
chr6 158363839 158363839 1 + G T COAD 158363835 + 158363815 158363855 41 CTTGTCAGATTGCAGAAAAGCTGAGGCAGGCCCTCAGCCGC CTTGTCAGATTGCAGAAAAGCTGATGCAGGCCCTCAGCCGC < 41bp 0.700839752126285 0.496268495900834 0.8896085 0.8581792 prediction 0.40167950425257 Functional Loss - SNX9 ENSG00000130340 CDS Human protein_coding chr6:158363835 chr6:158363839 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_98317 0 0 1 0 1 SNX9 chr6:158363823 3'AG 158363823 Downstream 17bp
chr14 20811812 20811812 1 + G T LUAD 20811810 + 20811790 20811830 41 GTTCGAATTCCATGGCGGCGCGGCGGCGACGGAGCACCGGC GTTCGAATTCCATGGCGGCGCGTCGGCGACGGAGCACCGGC < 41bp 0.921729095999676 0.720891545004066 0.85740054 0.58503467 prediction 0.401675101991219 Functional Loss - PARP2 ENSG00000129484 CDS Human protein_coding chr14:20811810 chr14:20811812 synonymous SNV . 0 23 hm5C_associated_SNPs_98319 0 0 1 0 1 PARP2 chr14:20811846 5'GT 20811846 Upstream 35bp
chr20 2293605 2293605 1 + G T LUAD 2293601 + 2293581 2293621 41 TGGATAGGAGTCTGAATTTCCGCCGTGACGCTGCTACTGAT TGGATAGGAGTCTGAATTTCCGCCTTGACGCTGCTACTGAT < 41bp 0.730480965561921 0.529646900808046 0.07010478 0.02648127 prediction 0.40166812950775 Functional Loss - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2293601 chr20:2293605 nonsynonymous SNV 0.000 3 25 hm5C_associated_SNPs_98321 0 0 0 0 2 TGM3 chr20:2293544 3'AG 2293544 Downstream 62bp
chr20 2293605 2293605 1 + G T LUAD 2293601 + 2293581 2293621 41 TGGATAGGAGTCTGAATTTCCGCCGTGACGCTGCTACTGAT TGGATAGGAGTCTGAATTTCCGCCTTGACGCTGCTACTGAT < 41bp 0.730480965561921 0.529646900808046 0.07010478 0.02648127 prediction 0.40166812950775 Functional Loss - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2293601 chr20:2293605 nonsynonymous SNV 0.000 3 25 hm5C_associated_SNPs_98321 0 0 0 0 2 TGM3 chr20:2293672 5'GT 2293672 Upstream 68bp
chr2 159313728 159313728 1 + A C rs562554933 159313724 + 159313704 159313744 41 GACGACGGCCGCTGCCTAAGCTGGAAAGTAAGTGTGTGGGC GACGACGGCCGCTGCCTAAGCTGGCAAGTAAGTGTGTGGGC < 41bp 0.817080701502125 0.616246870682691 0.20972493 0.34063733 prediction 0.401667661638869 Functional Loss - PKP4 ENSG00000144283 UTR5 Human protein_coding chr2:159313724 chr2:159313728 . . 0 25 hm5C_associated_SNPs_98322 0 0 1 0 1 PKP4 chr2:159313730 5'GT 159313730 Upstream 3bp
chr1 9775958 9775958 1 + C T LUSC 9775956 + 9775936 9775976 41 CCAGAAGTGAACGACTTTCGCGCCAAGATGTGCCAATTCTG CCAGAAGTGAACGACTTTCGCGTCAAGATGTGCCAATTCTG < 41bp 0.700833148383779 0.467991490135807 0.11834526 0.06925738 prediction 0.401666296767558 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9775956 chr1:9775958 nonsynonymous SNV 0.562 0 23 hm5C_associated_SNPs_98323 0 0 1 0 1 PIK3CD chr1:9775907 3'AG 9775907 Downstream 52bp
chr17 42979753 42979753 1 + C T UCEC 42979751 + 42979731 42979771 41 AGGAGAAAGCCCCCCTCCAGCCCGAGACGTCTGCTGACTTC AGGAGAAAGCCCCCCTCCAGCCTGAGACGTCTGCTGACTTC < 41bp 0.847243117763105 0.646410325785176 0.36140978 0.46334508 prediction 0.401665583955857 Functional Loss - CCDC103 ENSG00000167131 CDS Human protein_coding chr17:42979751 chr17:42979753 synonymous SNV . 0 23 hm5C_associated_SNPs_98324 0 0 0 0 3 CCDC103 chr17:42979686 3'AG 42979686 Downstream 68bp
chr17 42979753 42979753 1 + C T UCEC 42979751 + 42979731 42979771 41 AGGAGAAAGCCCCCCTCCAGCCCGAGACGTCTGCTGACTTC AGGAGAAAGCCCCCCTCCAGCCTGAGACGTCTGCTGACTTC < 41bp 0.847243117763105 0.646410325785176 0.36140978 0.46334508 prediction 0.401665583955857 Functional Loss - CCDC103 ENSG00000167131 CDS Human protein_coding chr17:42979751 chr17:42979753 synonymous SNV . 0 23 hm5C_associated_SNPs_98324 0 0 0 0 3 CCDC103 chr17:42979733 3'AG 42979733 Downstream 21bp
chr17 42979753 42979753 1 + C T UCEC 42979751 + 42979731 42979771 41 AGGAGAAAGCCCCCCTCCAGCCCGAGACGTCTGCTGACTTC AGGAGAAAGCCCCCCTCCAGCCTGAGACGTCTGCTGACTTC < 41bp 0.847243117763105 0.646410325785176 0.36140978 0.46334508 prediction 0.401665583955857 Functional Loss - CCDC103 ENSG00000167131 CDS Human protein_coding chr17:42979751 chr17:42979753 synonymous SNV . 0 23 hm5C_associated_SNPs_98324 0 0 0 0 3 CCDC103 chr17:42979736 3'AG 42979736 Downstream 18bp
chr17 48050618 48050618 1 + C T GBM 48050615 + 48050595 48050635 41 GCCCAGCTGGCAGCGCAGCTCGGCCTCACCCAGACCCAGGT GCCCAGCTGGCAGCGCAGCTCGGTCTCACCCAGACCCAGGT < 41bp 0.700830278302314 0.496172374152989 0.41823447 0.31774238 prediction 0.401660556604628 Functional Loss - DLX4 ENSG00000108813 CDS Human protein_coding chr17:48050615 chr17:48050618 synonymous SNV . 0 24 hm5C_associated_SNPs_98326 0 0 0 0 1 DLX4 chr17:48050633 5'GT 48050633 Upstream 16bp
chr1 192548289 192548289 1 + G A UCEC 192548286 + 192548266 192548306 41 GATCAATATTGACTTCCGCACTCGAGAATCTACAGCCAAGA GATCAATATTGACTTCCGCACTCAAGAATCTACAGCCAAGA < 41bp 0.767581760547139 0.566755278508489 0.5221606 0.11339569 prediction 0.401652964077299 Functional Loss - RGS1 ENSG00000090104 CDS Human protein_coding chr1:192548286 chr1:192548289 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_98330 0 0 0 0 1 RGS1 chr1:192548267 3'AG 192548267 Downstream 23bp
chr1 110018297 110018297 1 + C T BLCA 110018295 + 110018275 110018315 41 AACGAAGCCAAGGACGTGAGCTCCATCATCGTTGCATTTGG AACGAAGCCAAGGACGTGAGCTTCATCATCGTTGCATTTGG < 41bp 0.700824810856402 0.401881415334708 0.46303013 0.17714363 prediction 0.401649621712804 Functional Loss - SYPL2 ENSG00000143028 CDS Human protein_coding chr1:110018295 chr1:110018297 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_98332 0 0 0 0 2 SYPL2 chr1:110018203 3'AG 110018203 Downstream 95bp
chr1 110018297 110018297 1 + C T BLCA 110018295 + 110018275 110018315 41 AACGAAGCCAAGGACGTGAGCTCCATCATCGTTGCATTTGG AACGAAGCCAAGGACGTGAGCTTCATCATCGTTGCATTTGG < 41bp 0.700824810856402 0.401881415334708 0.46303013 0.17714363 prediction 0.401649621712804 Functional Loss - SYPL2 ENSG00000143028 CDS Human protein_coding chr1:110018295 chr1:110018297 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_98332 0 0 0 0 2 SYPL2 chr1:110018327 5'GT 110018327 Upstream 31bp
chr3 154857994 154857994 1 + T C LUSC 154857993 + 154857973 154858013 41 TCCATAGGCTACGGCTAAACCTGAAGATCGAAATGATCCAA TCCATAGGCTACGGCTAAACCCGAAGATCGAAATGATCCAA < 41bp 0.700823881781364 0.451377327727426 0.093215555 0.36268607 prediction 0.401647763562729 Functional Loss - MME ENSG00000196549 CDS Human protein_coding chr3:154857993 chr3:154857994 synonymous SNV . 0 22 hm5C_associated_SNPs_98334 0 0 0 0 1 MME chr3:154858081 5'GT 154858081 Upstream 88bp
chr11 64087313 64087313 1 + T C COAD 64087312 + 64087292 64087332 41 GGGTGTGCTGTTTGGAGTTCCTGGGGCCTTCACCCCTGGAT GGGTGTGCTGTTTGGAGTTCCCGGGGCCTTCACCCCTGGAT < 41bp 0.811476983449757 0.610653606718597 0.90733796 0.9303023 prediction 0.401646753462319 Functional Loss - PRDX5 ENSG00000126432 CDS Human protein_coding chr11:64087312 chr11:64087313 synonymous SNV . 0 22 hm5C_associated_SNPs_98335 0 0 1 1 1 PRDX5 chr11:64087340 5'GT 64087340 Upstream 28bp
chr1 39988086 39988086 1 + G A STAD 39988083 + 39988063 39988103 41 CTGTCCCTGCAGATGACGTCCGCGGCTCCCACGGCCGGCAG CTGTCCCTGCAGATGACGTCCGCAGCTCCCACGGCCGGCAG < 41bp 0.83396346887147 0.633142412236158 0.8901037 0.7885525 prediction 0.401642113270624 Functional Loss - BMP8A ENSG00000183682 CDS Human protein_coding chr1:39988083 chr1:39988086 nonsynonymous SNV 0.006 1 24 hm5C_associated_SNPs_98336 0 0 0 0 2 BMP8A chr1:39988075 3'AG 39988075 Downstream 12bp
chr1 39988086 39988086 1 + G A STAD 39988083 + 39988063 39988103 41 CTGTCCCTGCAGATGACGTCCGCGGCTCCCACGGCCGGCAG CTGTCCCTGCAGATGACGTCCGCAGCTCCCACGGCCGGCAG < 41bp 0.83396346887147 0.633142412236158 0.8901037 0.7885525 prediction 0.401642113270624 Functional Loss - BMP8A ENSG00000183682 CDS Human protein_coding chr1:39988083 chr1:39988086 nonsynonymous SNV 0.006 1 24 hm5C_associated_SNPs_98336 0 0 0 0 2 BMP8A chr1:39988154 5'GT 39988154 Upstream 69bp
chr15 42695111 42695111 1 + C T LUAD 42695108 + 42695088 42695128 41 CAGCGCTTCCGCCTGCCTCCCAGCGAGTACGTCATCGTGCC CAGCGCTTCCGCCTGCCTCCCAGTGAGTACGTCATCGTGCC < 41bp 0.745655209351593 0.544836375097102 0.6360723 0.30598566 prediction 0.401637668508982 Functional Loss - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42695108 chr15:42695111 synonymous SNV . 0 24 hm5C_associated_SNPs_98337 1 0 0 0 1 CAPN3 chr15:42695200 5'GT 42695200 Upstream 90bp
chr8 133900272 133900272 1 + G A COAD 133900269 + 133900249 133900289 41 CAGTCTGAGCAAGCTTTCCTCAGGACGGTGCAGGCCCTGCT CAGTCTGAGCAAGCTTTCCTCAGAACGGTGCAGGCCCTGCT < 41bp 0.700818086595173 0.458692434140391 0.9219649 0.6934684 prediction 0.401636173190346 Functional Loss - TG ENSG00000042832 CDS Human protein_coding chr8:133900269 chr8:133900272 synonymous SNV . 0 24 hm5C_associated_SNPs_98338 0 0 0 0 1 TG chr8:133900229 3'AG 133900229 Downstream 44bp
chr1 226016540 226016540 1 + G T DLBC 226016536 + 226016516 226016556 41 TTGAAGATGGGTGGTGGGGGCCAGGCACGAGGTCCGCAGCC TTGAAGATGGGTGGTGGGGGCCAGTCACGAGGTCCGCAGCC < 41bp 0.700814994081747 0.486735224588907 0.8533632 0.39367247 prediction 0.401629988163493 Functional Loss - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226016536 chr1:226016540 nonsynonymous SNV 0.005 4 25 hm5C_associated_SNPs_98340 0 0 1 0 1 EPHX1 chr1:226016613 5'GT 226016613 Upstream 74bp
chr15 20496624 20496624 1 + G A SKCM 20496621 + 20496601 20496641 41 CTACTAGTCGAAAGTGGCCTCATGAAGGGGAAGCCGAGGGT CTACTAGTCGAAAGTGGCCTCATAAAGGGGAAGCCGAGGGT < 41bp 0.70081288285717 0.47251420486345 0.26078776 0.2015545 prediction 0.40162576571434 Functional Loss - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20496621 chr15:20496624 . . 0 24 hm5C_associated_SNPs_98342 0 0 0 0 1 CHEK2P2 chr15:20496597 3'AG 20496597 Downstream 28bp
chr17 8168440 8168440 1 + C T UCEC 8168438 + 8168418 8168458 41 TGTTTGCTCTGGTCACTGACCTCCGGGTGAGTTCTCCCACA TGTTTGCTCTGGTCACTGACCTTCGGGTGAGTTCTCCCACA < 41bp 0.700811256756167 0.416863328093591 0.8996805 0.409696 prediction 0.401622513512333 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8168438 chr17:8168440 synonymous SNV . 0 23 hm5C_associated_SNPs_98343 0 0 1 0 1 PFAS chr17:8168443 5'GT 8168443 Upstream 4bp
chr6 50807918 50807918 1 + G T LUAD 50807914 + 50807894 50807934 41 TTTTGGGTACATTTGCGAAACGGAGTTTCCCGCCAAAGCCG TTTTGGGTACATTTGCGAAACGGATTTTCCCGCCAAAGCCG < 41bp 0.700811047818412 0.486794998173994 0.5078079 0.23326817 prediction 0.401622095636823 Functional Loss - TFAP2B ENSG00000008196 CDS Human protein_coding chr6:50807914 chr6:50807918 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_98344 0 0 0 0 2 TFAP2B chr6:50807869 3'AG 50807869 Downstream 50bp
chr6 50807918 50807918 1 + G T LUAD 50807914 + 50807894 50807934 41 TTTTGGGTACATTTGCGAAACGGAGTTTCCCGCCAAAGCCG TTTTGGGTACATTTGCGAAACGGATTTTCCCGCCAAAGCCG < 41bp 0.700811047818412 0.486794998173994 0.5078079 0.23326817 prediction 0.401622095636823 Functional Loss - TFAP2B ENSG00000008196 CDS Human protein_coding chr6:50807914 chr6:50807918 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_98344 0 0 0 0 2 TFAP2B chr6:50808010 5'GT 50808010 Upstream 93bp
chr19 56549483 56549483 1 + G A SKCM 56549480 + 56549460 56549500 41 CCTGAAATCTCTGAGCCTGGCAGGAAACAAGGTGACAGACC CCTGAAATCTCTGAGCCTGGCAGAAAACAAGGTGACAGACC < 41bp 0.828068866904358 0.627261004229021 0.40361655 0.29078937 prediction 0.401615725350676 Functional Loss - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56549480 chr19:56549483 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_98349 0 0 0 0 2 NLRP5 chr19:56549391 3'AG 56549391 Downstream 93bp
chr19 56549483 56549483 1 + G A SKCM 56549480 + 56549460 56549500 41 CCTGAAATCTCTGAGCCTGGCAGGAAACAAGGTGACAGACC CCTGAAATCTCTGAGCCTGGCAGAAAACAAGGTGACAGACC < 41bp 0.828068866904358 0.627261004229021 0.40361655 0.29078937 prediction 0.401615725350676 Functional Loss - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56549480 chr19:56549483 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_98349 0 0 0 0 2 NLRP5 chr19:56549561 5'GT 56549561 Upstream 79bp
chr5 75967669 75967669 1 + G A OV 75967666 + 75967646 75967686 41 TCAGCTTCAATAGAGGTGCCCGGGGACAGAACACCCTGCGC TCAGCTTCAATAGAGGTGCCCGGAGACAGAACACCCTGCGC < 41bp 0.700806277606863 0.458569066459953 0.9077022 0.8485813 prediction 0.401612555213725 Functional Loss - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75967666 chr5:75967669 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_98351 0 0 1 0 1 IQGAP2 chr5:75967584 3'AG 75967584 Downstream 86bp
chr7 116380017 116380017 1 + G A LGG 116380014 + 116379994 116380034 41 TGCTGTTTAGGTTGTGGTTTCTCGATCAGGACCATCAACCC TGCTGTTTAGGTTGTGGTTTCTCAATCAGGACCATCAACCC < 41bp 0.763682039916811 0.562880059412414 0.5933618 0.63146436 prediction 0.401603961008793 Functional Loss - MET ENSG00000105976 CDS Human protein_coding chr7:116380014 chr7:116380017 nonsynonymous SNV 0.572 4 24 hm5C_associated_SNPs_98354 0 0 1 0 1 MET chr7:116380004 3'AG 116380004 Downstream 14bp
chr11 376456 376456 1 + G A STAD 376453 + 376433 376473 41 ACGAGGACGAGGGGGAGCTGCTCGACAGCCTGGAGCCCACC ACGAGGACGAGGGGGAGCTGCTCAACAGCCTGGAGCCCACC < 41bp 0.825735395977693 0.624934331791804 0.85065246 0.89653707 prediction 0.401602128371778 Functional Loss - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:376453 chr11:376456 nonsynonymous SNV 0.416 2 24 hm5C_associated_SNPs_98355 0 0 1 0 1 B4GALNT4 chr11:376421 3'AG 376421 Downstream 36bp
chr6 147067091 147067091 1 + G T COAD 147067089 + 147067069 147067109 41 TTTTGTGGCGGAAGCATTTACAGGCGACACATATGTAGCAG TTTTGTGGCGGAAGCATTTACATGCGACACATATGTAGCAG < 41bp 0.700799247629403 0.346896746864491 0.77881765 0.14409813 prediction 0.401598495258805 Functional Loss - ADGB ENSG00000118492 CDS Human protein_coding chr6:147067089 chr6:147067091 nonsynonymous SNV 0.211 3 23 hm5C_associated_SNPs_98358 0 0 0 0 1 ADGB chr6:147067058 3'AG 147067058 Downstream 34bp
chrX 134706893 134706893 1 + G T KIRP 134706891 + 134706871 134706911 41 GAAAGAAATCACAGGGGAAACTGCACTTAGACTGACAGAAT GAAAGAAATCACAGGGGAAACTTCACTTAGACTGACAGAAT < 41bp 0.700798484185635 0.389179690032227 0.15231001 0.10148814 prediction 0.40159696837127 Functional Loss - INTS6L ENSG00000165359 CDS Human protein_coding chrX:134706891 chrX:134706893 nonsynonymous SNV 0.441 0 23 hm5C_associated_SNPs_98359 0 0 0 0 1 INTS6L chrX:134706958 5'GT 134706958 Upstream 66bp
chr4 160252682 160252682 1 + G T BRCA 160252679 + 160252659 160252699 41 TAGAAGAATTTGAAAACAATCTGGAAAGAGAGGTAATATTT TAGAAGAATTTGAAAACAATCTGTAAAGAGAGGTAATATTT < 41bp 0.70079638783456 0.341034096545859 0.31344092 0.07286435 prediction 0.401592775669119 Functional Loss - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160252679 chr4:160252682 stopgain 1.000 1 24 hm5C_associated_SNPs_98362 0 0 0 0 2 RAPGEF2 chr4:160252583 3'AG 160252583 Downstream 100bp
chr4 160252682 160252682 1 + G T BRCA 160252679 + 160252659 160252699 41 TAGAAGAATTTGAAAACAATCTGGAAAGAGAGGTAATATTT TAGAAGAATTTGAAAACAATCTGTAAAGAGAGGTAATATTT < 41bp 0.70079638783456 0.341034096545859 0.31344092 0.07286435 prediction 0.401592775669119 Functional Loss - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160252679 chr4:160252682 stopgain 1.000 1 24 hm5C_associated_SNPs_98362 0 0 0 0 2 RAPGEF2 chr4:160252690 5'GT 160252690 Upstream 9bp
chr5 68695882 68695882 1 + G A UCEC 68695879 + 68695859 68695899 41 TTTTCTTTTCTATACAGTATCGGGAAAATTGCCTGGCAGCA TTTTCTTTTCTATACAGTATCGGAAAAATTGCCTGGCAGCA < 41bp 0.786964654907759 0.58617017917973 0.9390214 0.91278946 prediction 0.401588951456058 Functional Loss - RAD17 ENSG00000152942 CDS Human protein_coding chr5:68695879 chr5:68695882 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_98364 0 0 0 0 1 RAD17 chr5:68695876 3'AG 68695876 Downstream 7bp
chr12 6935455 6935455 1 + G T PRAD 6935452 + 6935432 6935472 41 CCAGGGAGCCGGGACCCCGCCCAGGTGAAGCTGCTGCCTGG CCAGGGAGCCGGGACCCCGCCCATGTGAAGCTGCTGCCTGG < 41bp 0.700789297779246 0.291135549910307 0.8730423 0.12862849 prediction 0.401578595558491 Functional Loss - GPR162 ENSG00000250510 CDS Human protein_coding chr12:6935452 chr12:6935455 nonsynonymous SNV 0.969 0 24 hm5C_associated_SNPs_98370 0 0 0 0 2 GPR162 chr12:6935361 3'AG 6935361 Downstream 95bp
chr12 6935455 6935455 1 + G T PRAD 6935452 + 6935432 6935472 41 CCAGGGAGCCGGGACCCCGCCCAGGTGAAGCTGCTGCCTGG CCAGGGAGCCGGGACCCCGCCCATGTGAAGCTGCTGCCTGG < 41bp 0.700789297779246 0.291135549910307 0.8730423 0.12862849 prediction 0.401578595558491 Functional Loss - GPR162 ENSG00000250510 CDS Human protein_coding chr12:6935452 chr12:6935455 nonsynonymous SNV 0.969 0 24 hm5C_associated_SNPs_98370 0 0 0 0 2 GPR162 chr12:6935518 5'GT 6935518 Upstream 64bp
chr8 23112846 23112846 1 + C T BLCA 23112844 + 23112824 23112864 41 CCCTGTCAGAGCTCAGCACCCTCTGTGCTAACTCCTGCCCA CCCTGTCAGAGCTCAGCACCCTTTGTGCTAACTCCTGCCCA < 41bp 0.700788770053835 0.41459024434812 0.2508443 0.26848117 prediction 0.40157754010767 Functional Loss - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23112844 chr8:23112846 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_98371 0 0 1 0 2 CHMP7 chr8:23112760 3'AG 23112760 Downstream 87bp
chr8 23112846 23112846 1 + C T BLCA 23112844 + 23112824 23112864 41 CCCTGTCAGAGCTCAGCACCCTCTGTGCTAACTCCTGCCCA CCCTGTCAGAGCTCAGCACCCTTTGTGCTAACTCCTGCCCA < 41bp 0.700788770053835 0.41459024434812 0.2508443 0.26848117 prediction 0.40157754010767 Functional Loss - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23112844 chr8:23112846 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_98371 0 0 1 0 2 CHMP7 chr8:23112945 5'GT 23112945 Upstream 100bp
chr20 9498855 9498855 1 + C T LUAD 9498853 + 9498833 9498873 41 ATCCAACCTTTTGACATTATCTCAGATTTTGTCTTCAGTGA ATCCAACCTTTTGACATTATCTTAGATTTTGTCTTCAGTGA < 41bp 0.700788487437975 0.412423247884884 0.11504462 0.16167074 prediction 0.401576974875949 Functional Loss - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9498853 chr20:9498855 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_98372 0 0 0 0 1 LAMP5 chr20:9498875 5'GT 9498875 Upstream 21bp
chr7 73929852 73929852 1 + G A UCEC 73929849 + 73929829 73929869 41 GGGTGGAGGCCGTAGCCTCCCTCGGTCCTCCCTGGAACATG GGGTGGAGGCCGTAGCCTCCCTCAGTCCTCCCTGGAACATG < 41bp 0.840856490300816 0.640070668602337 0.01953119 0.022343248 prediction 0.401571643396958 Functional Loss - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73929849 chr7:73929852 nonsynonymous SNV 0.666 3 24 hm5C_associated_SNPs_98374 0 0 0 0 2 GTF2IRD1 chr7:73929771 3'AG 73929771 Downstream 82bp
chr7 73929852 73929852 1 + G A UCEC 73929849 + 73929829 73929869 41 GGGTGGAGGCCGTAGCCTCCCTCGGTCCTCCCTGGAACATG GGGTGGAGGCCGTAGCCTCCCTCAGTCCTCCCTGGAACATG < 41bp 0.840856490300816 0.640070668602337 0.01953119 0.022343248 prediction 0.401571643396958 Functional Loss - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73929849 chr7:73929852 nonsynonymous SNV 0.666 3 24 hm5C_associated_SNPs_98374 0 0 0 0 2 GTF2IRD1 chr7:73929926 5'GT 73929926 Upstream 75bp
chr6 25777040 25777040 1 + G A SKCM 25777037 + 25777017 25777057 41 CTGTGTTTGTCCTCCTACCCCAGGGGTTCTCTTCCCATCCG CTGTGTTTGTCCTCCTACCCCAGAGGTTCTCTTCCCATCCG < 41bp 0.835037574315168 0.634252864651286 0.8978648 0.35276955 prediction 0.401569419327764 Functional Loss - SLC17A4 ENSG00000146039 CDS Human protein_coding chr6:25777037 chr6:25777040 nonsynonymous SNV 0.313 3 24 hm5C_associated_SNPs_98376 0 0 0 0 1 SLC17A4 chr6:25777040 3'AG 25777040 Downstream 1bp
chr19 10132252 10132252 1 + C T COAD 10132249 + 10132229 10132269 41 GCTCGACTCGACCACCCCTGCGCCGACAGACCAACATCCGC GCTCGACTCGACCACCCCTGCGCTGACAGACCAACATCCGC < 41bp 0.700783563586782 0.487788478124461 0.14346486 0.20322457 prediction 0.401567127173563 Functional Loss - RDH8 ENSG00000080511 CDS Human protein_coding chr19:10132249 chr19:10132252 stopgain 0.443 0 24 hm5C_associated_SNPs_98377 0 0 0 0 1 RDH8 chr19:10132210 3'AG 10132210 Downstream 43bp
chr5 14713005 14713005 1 - G A COAD 14713008 - 14712988 14713028 41 ATCCACCATGGTCGCCATCGCTGCGTGCTATGTCTACCGGA ATCCACCATGGTCGCCATCGCTGTGTGCTATGTCTACCGGA < 41bp 0.761176003942452 0.560393906307428 0.43163332 0.3253947 prediction 0.401564195270049 Functional Loss - ANKH ENSG00000154122 CDS Human protein_coding chr5:14713008 chr5:14713005 nonsynonymous SNV 0.239 2 24 hm5C_associated_SNPs_98378 0 0 1 0 1 ANKH chr5:14712983 5'GT 14712983 Upstream 23bp
chr2 69049910 69049910 1 + G T TGCT 69049908 + 69049888 69049928 41 TGGGCCTGGAAAAAAGAACTCTGGAGAAGAGGAAATTGATT TGGGCCTGGAAAAAAGAACTCTTGAGAAGAGGAAATTGATT < 41bp 0.700778234243176 0.363699186161582 0.25950897 0.12326661 prediction 0.401556468486352 Functional Loss - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69049908 chr2:69049910 stopgain 0.987 0 23 hm5C_associated_SNPs_98379 0 0 0 0 1 ARHGAP25 chr2:69050004 5'GT 69050004 Upstream 95bp
chr10 121565903 121565903 1 + G A SARC 121565900 + 121565880 121565920 41 AAGCTGGGGTAATATGTAAGCAGGAAGGGATTTTTCGTGTT AAGCTGGGGTAATATGTAAGCAGAAAGGGATTTTTCGTGTT < 41bp 0.800867657032399 0.600090499720172 0.48027343 0.3387761 prediction 0.401554314624454 Functional Loss - INPP5F ENSG00000198825 CDS Human protein_coding chr10:121565900 chr10:121565903 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_98380 0 0 0 0 1 INPP5F chr10:121565992 5'GT 121565992 Upstream 90bp
chr15 80988326 80988326 1 + G T LUAD 80988322 + 80988302 80988342 41 CCCTCCGAGAAGAACCTCTACGCCGACATCGACGCCGCGTG CCCTCCGAGAAGAACCTCTACGCCTACATCGACGCCGCGTG < 41bp 0.722086536443841 0.521310100908662 0.07713908 0.084380835 prediction 0.401552871070358 Functional Loss - ABHD17C ENSG00000136379 CDS Human protein_coding chr15:80988322 chr15:80988326 nonsynonymous SNV 0.978 3 25 hm5C_associated_SNPs_98381 0 0 0 0 1 ABHD17C chr15:80988360 5'GT 80988360 Upstream 35bp
chr20 30674449 30674449 1 + C T SKCM 30674447 + 30674427 30674467 41 CCAGCCACCTACAACAAGCACACCAAGGTGGCAGTGAAGAC CCAGCCACCTACAACAAGCACATCAAGGTGGCAGTGAAGAC < 41bp 0.700776285050335 0.402933499425516 0.02620849 0.061849207 prediction 0.401552570100669 Functional Loss - HCK ENSG00000101336 CDS Human protein_coding chr20:30674447 chr20:30674449 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_98382 0 0 0 0 1 HCK chr20:30674431 3'AG 30674431 Downstream 19bp
chr7 75511493 75511493 1 + G A SKCM 75511490 + 75511470 75511510 41 CCGTGGCTCCTGCTGGGTGCCTCGTGGCTCATTCCCCAGAC CCGTGGCTCCTGCTGGGTGCCTCATGGCTCATTCCCCAGAC < 41bp 0.831213165696841 0.630438071331248 0.29685163 0.13660038 prediction 0.401550188731187 Functional Loss - RHBDD2 ENSG00000005486 CDS Human protein_coding chr7:75511490 chr7:75511493 synonymous SNV . 0 24 hm5C_associated_SNPs_98384 0 0 1 0 1 RHBDD2 chr7:75511554 5'GT 75511554 Upstream 62bp
chr16 56969209 56969209 1 + G T LGG 56969206 + 56969186 56969226 41 TTGTTGGATCACCAATGTCTCAGGGACTTGCTTCCAAAGGT TTGTTGGATCACCAATGTCTCAGTGACTTGCTTCCAAAGGT < 41bp 0.700774961759181 0.310932790562384 0.93531007 0.4713448 prediction 0.401549923518361 Functional Loss - HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56969206 chr16:56969209 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_98385 0 0 1 0 1 HERPUD1 chr16:56969224 5'GT 56969224 Upstream 16bp
chr14 72152312 72152312 1 + G A SKCM 72152309 + 72152289 72152329 41 AGAAAGAGCCGCCAACATCCCTCGAAGCATCTCCAGTGACG AGAAAGAGCCGCCAACATCCCTCAAAGCATCTCCAGTGACG < 41bp 0.81993207065965 0.619157476261139 0.27038068 0.011840522 prediction 0.401549188797022 Functional Loss - SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72152309 chr14:72152312 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_98386 0 0 0 0 1 SIPA1L1 chr14:72152348 5'GT 72152348 Upstream 37bp
chr16 67911480 67911480 1 + G T SARC 67911478 + 67911458 67911498 41 AACCACTTTCGCAGGATCATCTGGTGCCCCTTCATCCCTGA AACCACTTTCGCAGGATCATCTTGTGCCCCTTCATCCCTGA < 41bp 0.700774231780963 0.374554825073548 0.5109796 0.04445222 prediction 0.401548463561927 Functional Loss - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67911478 chr16:67911480 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_98387 0 0 1 0 2 EDC4 chr16:67911412 3'AG 67911412 Downstream 69bp
chr16 67911480 67911480 1 + G T SARC 67911478 + 67911458 67911498 41 AACCACTTTCGCAGGATCATCTGGTGCCCCTTCATCCCTGA AACCACTTTCGCAGGATCATCTTGTGCCCCTTCATCCCTGA < 41bp 0.700774231780963 0.374554825073548 0.5109796 0.04445222 prediction 0.401548463561927 Functional Loss - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67911478 chr16:67911480 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_98387 0 0 1 0 2 EDC4 chr16:67911559 5'GT 67911559 Upstream 80bp
chr11 118962207 118962207 1 + C T UCEC 118962204 + 118962184 118962224 41 TCCTGGCAACAGCTGGCCTGCAGCGCATGGGCTGGCACAAC TCCTGGCAACAGCTGGCCTGCAGTGCATGGGCTGGCACAAC < 41bp 0.700771774537733 0.498195120770225 0.5402202 0.43562502 prediction 0.401543549075466 Functional Loss - HMBS ENSG00000256269 CDS Human protein_coding chr11:118962204 chr11:118962207 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_98389 1 0 1 0 2 HMBS chr11:118962123 3'AG 118962123 Downstream 85bp
chr11 118962207 118962207 1 + C T UCEC 118962204 + 118962184 118962224 41 TCCTGGCAACAGCTGGCCTGCAGCGCATGGGCTGGCACAAC TCCTGGCAACAGCTGGCCTGCAGTGCATGGGCTGGCACAAC < 41bp 0.700771774537733 0.498195120770225 0.5402202 0.43562502 prediction 0.401543549075466 Functional Loss - HMBS ENSG00000256269 CDS Human protein_coding chr11:118962204 chr11:118962207 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_98389 1 0 1 0 2 HMBS chr11:118962236 5'GT 118962236 Upstream 30bp
chr16 67919731 67919731 1 + C T PRAD 67919728 + 67919708 67919748 41 CGCTTGGGGGACAGCATGGGCCGCGGAGGCGAGCTGGAGAC CGCTTGGGGGACAGCATGGGCCGTGGAGGCGAGCTGGAGAC < 41bp 0.730116973820184 0.5293490212974 0.32419586 0.29295653 prediction 0.401535905045568 Functional Loss - NRN1L ENSG00000188038 CDS Human protein_coding chr16:67919728 chr16:67919731 synonymous SNV . 0 24 hm5C_associated_SNPs_98396 0 0 1 0 1 NRN1L chr16:67919757 5'GT 67919757 Upstream 27bp
chr6 36178226 36178226 1 + C T BLCA 36178223 + 36178203 36178243 41 GCCCGGCGGCAGGCAGAGAACATCGGCTATGACCCCGAGAG GCCCGGCGGCAGGCAGAGAACATTGGCTATGACCCCGAGAG < 41bp 0.700767558793416 0.488985149130825 0.37244508 0.31392896 prediction 0.401535117586832 Functional Loss - BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36178223 chr6:36178226 synonymous SNV . 0 24 hm5C_associated_SNPs_98398 0 0 1 0 1 BRPF3 chr6:36178305 5'GT 36178305 Upstream 80bp
chr2 171705804 171705804 1 + G A SKCM 171705801 + 171705781 171705821 41 TCTCTGTCCCCACAGGCTGCCTGGGGAGGTGGGCTGCTCAT TCTCTGTCCCCACAGGCTGCCTGAGGAGGTGGGCTGCTCAT < 41bp 0.817711600132167 0.616944483287247 0.435654 0.2548529 prediction 0.40153423368984 Functional Loss - GAD1 ENSG00000128683 CDS Human protein_coding chr2:171705801 chr2:171705804 stopgain 0.999 1 24 hm5C_associated_SNPs_98399 0 0 1 0 2 GAD1 chr2:171705796 3'AG 171705796 Downstream 9bp
chr2 171705804 171705804 1 + G A SKCM 171705801 + 171705781 171705821 41 TCTCTGTCCCCACAGGCTGCCTGGGGAGGTGGGCTGCTCAT TCTCTGTCCCCACAGGCTGCCTGAGGAGGTGGGCTGCTCAT < 41bp 0.817711600132167 0.616944483287247 0.435654 0.2548529 prediction 0.40153423368984 Functional Loss - GAD1 ENSG00000128683 CDS Human protein_coding chr2:171705801 chr2:171705804 stopgain 0.999 1 24 hm5C_associated_SNPs_98399 0 0 1 0 2 GAD1 chr2:171705860 5'GT 171705860 Upstream 57bp
chr1 86047055 86047055 1 + C T BLCA 86047053 + 86047033 86047073 41 TTCTCCCCCTTCCAGGCGCTCTCCACCTGCCCCGCTGCCTG TTCTCCCCCTTCCAGGCGCTCTTCACCTGCCCCGCTGCCTG < 41bp 0.850537068472492 0.649773506115758 0.9281288 0.2315825 prediction 0.401527124713468 Functional Loss - CYR61 ENSG00000142871 CDS Human protein_coding chr1:86047053 chr1:86047055 nonsynonymous SNV 0.992 2 23 hm5C_associated_SNPs_98402 0 0 1 0 1 CYR61 chr1:86047048 3'AG 86047048 Downstream 8bp
chr16 336454 336454 1 + G T UCEC 336451 + 336431 336471 41 CAGGTGGCTTTTGACGAAACCAAGAATGTGTTTGTCAAGTT CAGGTGGCTTTTGACGAAACCAATAATGTGTTTGTCAAGTT < 41bp 0.700759134514617 0.304586864623058 0.054970622 0.0472416 prediction 0.401518269029234 Functional Loss - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:336451 chr16:336454 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_98407 0 0 0 0 1 PDIA2 chr16:336473 5'GT 336473 Upstream 20bp
chr10 96306165 96306165 1 + G T LUAD 96306163 + 96306143 96306183 41 CTCCAGCAATGGTTGAACAACTGGACACTGCTGTGATTACC CTCCAGCAATGGTTGAACAACTTGACACTGCTGTGATTACC < 41bp 0.910027702433065 0.709272041008913 0.5533955 0.13235572 prediction 0.401511322848304 Functional Loss - HELLS ENSG00000119969 CDS Human protein_coding chr10:96306163 chr10:96306165 synonymous SNV . 0 23 hm5C_associated_SNPs_98410 0 0 1 2 2 HELLS chr10:96306134 3'AG 96306134 Downstream 32bp
chr10 96306165 96306165 1 + G T LUAD 96306163 + 96306143 96306183 41 CTCCAGCAATGGTTGAACAACTGGACACTGCTGTGATTACC CTCCAGCAATGGTTGAACAACTTGACACTGCTGTGATTACC < 41bp 0.910027702433065 0.709272041008913 0.5533955 0.13235572 prediction 0.401511322848304 Functional Loss - HELLS ENSG00000119969 CDS Human protein_coding chr10:96306163 chr10:96306165 synonymous SNV . 0 23 hm5C_associated_SNPs_98410 0 0 1 2 2 HELLS chr10:96306255 5'GT 96306255 Upstream 91bp
chr1 155014080 155014080 1 + C T UCEC 155014077 + 155014057 155014097 41 TGTATGAGCTGAAGACCAAGCTGCGTTGCTCCTGTGAGGGG TGTATGAGCTGAAGACCAAGCTGTGTTGCTCCTGTGAGGGG < 41bp 0.762565800703092 0.561813847519789 0.12285426 0.08692536 prediction 0.401503906366605 Functional Loss - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155014077 chr1:155014080 nonsynonymous SNV 0.981 4 24 hm5C_associated_SNPs_98411 0 0 0 0 1 DCST1 chr1:155014089 5'GT 155014089 Upstream 10bp
chr13 49039417 49039417 1 + G A UCEC 49039414 + 49039394 49039434 41 TAGTTCACCCTTACGGATTCCTGGAGGGAACATCTATATTT TAGTTCACCCTTACGGATTCCTGAAGGGAACATCTATATTT < 41bp 0.789842070254171 0.589091007665343 0.09960595 0.018819928 prediction 0.401502125177656 Functional Loss - RB1 ENSG00000139687 CDS Human protein_coding chr13:49039414 chr13:49039417 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_98412 0 0 0 0 2 RB1 chr13:49039341 3'AG 49039341 Downstream 77bp
chr13 49039417 49039417 1 + G A UCEC 49039414 + 49039394 49039434 41 TAGTTCACCCTTACGGATTCCTGGAGGGAACATCTATATTT TAGTTCACCCTTACGGATTCCTGAAGGGAACATCTATATTT < 41bp 0.789842070254171 0.589091007665343 0.09960595 0.018819928 prediction 0.401502125177656 Functional Loss - RB1 ENSG00000139687 CDS Human protein_coding chr13:49039414 chr13:49039417 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_98412 0 0 0 0 2 RB1 chr13:49039504 5'GT 49039504 Upstream 88bp
chr5 126667056 126667056 1 + G T LUAD 126667054 + 126667034 126667074 41 ATTTGTTTATTGTTATGCCACTGGATTGGGACAGCATCACC ATTTGTTTATTGTTATGCCACTTGATTGGGACAGCATCACC < 41bp 0.7007506413104 0.369358027819217 0.14860839 0.0693427 prediction 0.401501282620801 Functional Loss - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126667054 chr5:126667056 nonsynonymous SNV 0.112 1 23 hm5C_associated_SNPs_98413 0 0 0 0 2 MEGF10 chr5:126666983 3'AG 126666983 Downstream 74bp
chr5 126667056 126667056 1 + G T LUAD 126667054 + 126667034 126667074 41 ATTTGTTTATTGTTATGCCACTGGATTGGGACAGCATCACC ATTTGTTTATTGTTATGCCACTTGATTGGGACAGCATCACC < 41bp 0.7007506413104 0.369358027819217 0.14860839 0.0693427 prediction 0.401501282620801 Functional Loss - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126667054 chr5:126667056 nonsynonymous SNV 0.112 1 23 hm5C_associated_SNPs_98413 0 0 0 0 2 MEGF10 chr5:126667116 5'GT 126667116 Upstream 61bp
chr2 228754681 228754681 1 + G T LUAD 228754678 + 228754658 228754698 41 TACAGAGGTTGCAAGAGAAACTCGGCCAGAACAGCAATCAC TACAGAGGTTGCAAGAGAAACTCTGCCAGAACAGCAATCAC < 41bp 0.700747530685762 0.319370136402299 0.108290166 0.075942695 prediction 0.401495061371525 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228754678 chr2:228754681 nonsynonymous SNV 0.621 0 24 hm5C_associated_SNPs_98415 0 0 0 0 1 DAW1 chr2:228754716 5'GT 228754716 Upstream 36bp
chr3 128971486 128971486 1 + G A STAD 128971483 + 128971463 128971503 41 CAGGGGGAGCACCTGGGGACCACGGAAGCGACCGAGGCCTT CAGGGGGAGCACCTGGGGACCACAGAAGCGACCGAGGCCTT < 41bp 0.75769869177517 0.556951990792418 0.4093604 0.26460046 prediction 0.401493401965505 Functional Loss - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128971483 chr3:128971486 synonymous SNV . 0 24 hm5C_associated_SNPs_98416 0 0 1 0 2 COPG1 chr3:128971466 3'AG 128971466 Downstream 21bp
chr3 128971486 128971486 1 + G A STAD 128971483 + 128971463 128971503 41 CAGGGGGAGCACCTGGGGACCACGGAAGCGACCGAGGCCTT CAGGGGGAGCACCTGGGGACCACAGAAGCGACCGAGGCCTT < 41bp 0.75769869177517 0.556951990792418 0.4093604 0.26460046 prediction 0.401493401965505 Functional Loss - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128971483 chr3:128971486 synonymous SNV . 0 24 hm5C_associated_SNPs_98416 0 0 1 0 2 COPG1 chr3:128971537 5'GT 128971537 Upstream 52bp
chr5 110819772 110819772 1 + A C LUSC 110819771 + 110819751 110819791 41 TCGCGCCTGGGAAGTGCCAGCAGCAGCCATGGCAGCATCCA TCGCGCCTGGGAAGTGCCAGCCGCAGCCATGGCAGCATCCA < 41bp 0.842537358359081 0.641796580238346 0.5280968 0.25395888 prediction 0.401481556241471 Functional Loss - CAMK4 ENSG00000152495 CDS Human protein_coding chr5:110819771 chr5:110819772 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_98418 0 0 0 0 1 CAMK4 chr5:110819724 3'AG 110819724 Downstream 49bp
chr16 67231786 67231786 1 + G T UCEC 67231782 + 67231762 67231802 41 ATTCCCAGAGTGCATGAGCTCGGAGCTGCTGGAGGAGTTGA ATTCCCAGAGTGCATGAGCTCGGATCTGCTGGAGGAGTTGA < 41bp 0.70947804005679 0.508738573994912 0.8861192 0.43236277 prediction 0.401478932123755 Functional Loss - E2F4 ENSG00000205250 CDS Human protein_coding chr16:67231782 chr16:67231786 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_98419 0 0 1 0 1 E2F4 chr16:67231814 5'GT 67231814 Upstream 29bp
chr12 133291561 133291561 1 + C T BLCA 133291558 + 133291538 133291578 41 GCCACGCGGCACATCTTCCTCATCAGGCATTCCCAGTACCA GCCACGCGGCACATCTTCCTCATTAGGCATTCCCAGTACCA < 41bp 0.700736934663683 0.48666407088881 0.14971969 0.16047665 prediction 0.401473869327367 Functional Loss - PGAM5 ENSG00000176894;ENSG00000247077 CDS Human other chr12:133291558 chr12:133291561 stopgain . 0 24 hm5C_associated_SNPs_98424 0 0 1 0 1 PGAM5 chr12:133291622 5'GT 133291622 Upstream 62bp
chr21 46640848 46640848 1 + G A UCEC 46640845 + 46640825 46640865 41 GCTATTGAGGTCATCAACGCCACGACTGGGAAGGATGAGCT GCTATTGAGGTCATCAACGCCACAACTGGGAAGGATGAGCT < 41bp 0.778878612804743 0.578141966258203 0.101275146 0.25144637 prediction 0.401473293093081 Functional Loss - ADARB1 ENSG00000197381 CDS Human protein_coding chr21:46640845 chr21:46640848 synonymous SNV . 0 24 hm5C_associated_SNPs_98426 0 0 1 0 2 ADARB1 chr21:46640751 3'AG 46640751 Downstream 98bp
chr21 46640848 46640848 1 + G A UCEC 46640845 + 46640825 46640865 41 GCTATTGAGGTCATCAACGCCACGACTGGGAAGGATGAGCT GCTATTGAGGTCATCAACGCCACAACTGGGAAGGATGAGCT < 41bp 0.778878612804743 0.578141966258203 0.101275146 0.25144637 prediction 0.401473293093081 Functional Loss - ADARB1 ENSG00000197381 CDS Human protein_coding chr21:46640845 chr21:46640848 synonymous SNV . 0 24 hm5C_associated_SNPs_98426 0 0 1 0 2 ADARB1 chr21:46640929 5'GT 46640929 Upstream 82bp
chr3 195395488 195395488 1 + G A BLCA 195395485 + 195395465 195395505 41 CAGGCCTTCCTTGCCAGGACCTCGAGTTTGTTCAGTTCCAC CAGGCCTTCCTTGCCAGGACCTCAAGTTTGTTCAGTTCCAC < 41bp 0.814537919139887 0.613802464267998 0.2664388 0.20778033 prediction 0.401470909743778 Functional Loss - SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195395485 chr3:195395488 . . 0 24 hm5C_associated_SNPs_98429 0 0 0 0 2 SDHAP2 chr3:195395390 3'AG 195395390 Downstream 99bp
chr3 195395488 195395488 1 + G A BLCA 195395485 + 195395465 195395505 41 CAGGCCTTCCTTGCCAGGACCTCGAGTTTGTTCAGTTCCAC CAGGCCTTCCTTGCCAGGACCTCAAGTTTGTTCAGTTCCAC < 41bp 0.814537919139887 0.613802464267998 0.2664388 0.20778033 prediction 0.401470909743778 Functional Loss - SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195395485 chr3:195395488 . . 0 24 hm5C_associated_SNPs_98429 0 0 0 0 2 SDHAP2 chr3:195395512 5'GT 195395512 Upstream 25bp
chr15 28835377 28835377 1 + G A rs568607139 28835374 + 28835354 28835394 41 GTTTGGCTGCCCAGGCTCGCCTCGACTCCAAATGGTTGAAA GTTTGGCTGCCCAGGCTCGCCTCAACTCCAAATGGTTGAAA < 41bp 0.700735419111906 0.473020439773611 0.26041755 0.16548431 prediction 0.401470838223813 Functional Loss - HERC2P11 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28835374 chr15:28835377 . . 0 24 hm5C_associated_SNPs_98430 0 0 0 0 1 HERC2P11 chr15:28835304 3'AG 28835304 Downstream 74bp
chr1 20678579 20678579 1 + C T COAD 20678577 + 20678557 20678597 41 CAACAAGTCCAGGCTACTGACGCGAGCAGCCAAGGGCTTCC CAACAAGTCCAGGCTACTGACGTGAGCAGCCAAGGGCTTCC < 41bp 0.873169179501808 0.67243457423595 0.40343267 0.35856482 prediction 0.401469210531715 Functional Loss - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20678577 chr1:20678579 stopgain 0.034 0 23 hm5C_associated_SNPs_98432 0 0 0 0 2 VWA5B1 chr1:20678548 3'AG 20678548 Downstream 32bp
chr1 20678579 20678579 1 + C T COAD 20678577 + 20678557 20678597 41 CAACAAGTCCAGGCTACTGACGCGAGCAGCCAAGGGCTTCC CAACAAGTCCAGGCTACTGACGTGAGCAGCCAAGGGCTTCC < 41bp 0.873169179501808 0.67243457423595 0.40343267 0.35856482 prediction 0.401469210531715 Functional Loss - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20678577 chr1:20678579 stopgain 0.034 0 23 hm5C_associated_SNPs_98432 0 0 0 0 2 VWA5B1 chr1:20678665 5'GT 20678665 Upstream 87bp
chr14 105939759 105939759 1 + G T UCEC 105939755 + 105939735 105939775 41 AAGGGAGGAGGGTGCTGCCACAGAGAGCCCAGCCAGGACCA AAGGGAGGAGGGTGCTGCCACAGATAGCCCAGCCAGGACCA < 41bp 0.700734156561308 0.481321038670964 0.57220757 0.25466198 prediction 0.401468313122616 Functional Loss - CRIP2 ENSG00000182809 CDS Human protein_coding chr14:105939755 chr14:105939759 stopgain 0.000 0 25 hm5C_associated_SNPs_98433 0 0 0 0 1 CRIP2 chr14:105939849 5'GT 105939849 Upstream 91bp
chr8 11291604 11291604 1 + G A rs148489358 11291601 + 11291581 11291621 41 TGAAGGGCAACTGGAGGTTCCGGGGAAATGTGAAGAAAGAA TGAAGGGCAACTGGAGGTTCCGGAGAAATGTGAAGAAAGAA < 41bp 0.791118003909265 0.590385164844343 0.9148176 0.90437657 prediction 0.401465678129845 Functional Loss - FAM167A-AS1 ENSG00000184608 UTR5 Human antisense chr8:11291601 chr8:11291604 . . 0 24 hm5C_associated_SNPs_98436 0 0 0 2 1 FAM167A-AS1 chr8:11291644 5'GT 11291644 Upstream 41bp
chr9 131446266 131446266 1 + C T UCEC 131446263 + 131446243 131446283 41 ACCGGAGGAGACATCGGCCTCTGCAGGCTTGCCGAAGAAGG ACCGGAGGAGACATCGGCCTCTGTAGGCTTGCCGAAGAAGG < 41bp 0.745341688141286 0.544610331282031 0.22676569 0.25644392 prediction 0.401462713718509 Functional Loss - SET ENSG00000119335 CDS Human protein_coding chr9:131446263 chr9:131446266 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_98438 0 0 1 0 1 SET chr9:131446286 5'GT 131446286 Upstream 21bp
chr1 167064177 167064177 1 + C T COAD 167064174 + 167064154 167064194 41 GGGCGGTGCAGGCCCACTACCTCCGAAGCCCCTCCCCTAGC GGGCGGTGCAGGCCCACTACCTCTGAAGCCCCTCCCCTAGC < 41bp 0.754821586779227 0.554095618366474 0.7845292 0.20673236 prediction 0.401451936825506 Functional Loss - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167064174 chr1:167064177 stopgain 0.997 1 24 hm5C_associated_SNPs_98443 0 0 0 0 1 DUSP27 chr1:167064196 5'GT 167064196 Upstream 20bp
chr14 24108409 24108409 1 + A T rs555965971 24108407 + 24108387 24108427 41 GGATCGGCTTTGCCATCGCCCGACGTCTGGCCCGGGACGGG GGATCGGCTTTGCCATCGCCCGTCGTCTGGCCCGGGACGGG < 41bp 0.734243790097976 0.533518778275706 0.413896 0.19293621 prediction 0.401450023644539 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24108407 chr14:24108409 synonymous SNV . 0 23 hm5C_associated_SNPs_98444 0 0 1 0 1 DHRS2 chr14:24108388 3'AG 24108388 Downstream 22bp
chr2 29226547 29226547 1 + C T COAD 29226545 + 29226525 29226565 41 AGGCCTGAGGGCCCCACGCACGCGGTAAGAGCTCCAAGTCA AGGCCTGAGGGCCCCACGCACGTGGTAAGAGCTCCAAGTCA < 41bp 0.826205860462977 0.625486382643248 0.19114286 0.34645066 prediction 0.401438955639458 Functional Loss - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29226545 chr2:29226547 stopgain 0.010 0 23 hm5C_associated_SNPs_98447 0 0 0 0 1 TOGARAM2 chr2:29226548 5'GT 29226548 Upstream 2bp
chr18 28991165 28991165 1 + G T COAD 28991161 + 28991141 28991181 41 ATGCGCGCTGCAGGCAACTCCAGCGCTGTTAAACCAACATC ATGCGCGCTGCAGGCAACTCCAGCTCTGTTAAACCAACATC < 41bp 0.759397048730322 0.55867767204493 0.32847488 0.42520928 prediction 0.401438753370784 Functional Loss - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28991161 chr18:28991165 synonymous SNV . 0 25 hm5C_associated_SNPs_98448 0 0 0 0 1 DSG4 chr18:28991073 3'AG 28991073 Downstream 93bp
chr5 126746174 126746174 1 + C T STAD 126746171 + 126746151 126746191 41 GGGAAGTGTTACCACGTGAGCGGCGCATGCCTCTGTGAAGC GGGAAGTGTTACCACGTGAGCGGTGCATGCCTCTGTGAAGC < 41bp 0.747009305472612 0.546291094323473 0.8412547 0.53328437 prediction 0.401436422298279 Functional Loss - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126746171 chr5:126746174 synonymous SNV . 0 24 hm5C_associated_SNPs_98449 0 0 0 0 1 MEGF10 chr5:126746081 3'AG 126746081 Downstream 94bp
chr22 17083022 17083022 1 + C T COAD 17083020 + 17083000 17083040 41 CCCCCCGAGGAGCCTGGAGCCCCGGCCCCGAGCCCCCCAGC CCCCCCGAGGAGCCTGGAGCCCTGGCCCCGAGCCCCCCAGC < 41bp 0.772285717902749 0.571568603688413 0.80834603 0.5597097 prediction 0.401434228428671 Functional Loss - TPTEP1 ENSG00000100181 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:17083020 chr22:17083022 . . 0 23 hm5C_associated_SNPs_98451 0 0 0 0 1 TPTEP1 chr22:17083105 5'GT 17083105 Upstream 84bp
chr16 24834213 24834213 1 + C T COAD 24834210 + 24834190 24834230 41 CCTAGATCGATGGCTCAACTCTGCGCACTCTGTGCATGCAG CCTAGATCGATGGCTCAACTCTGTGCACTCTGTGCATGCAG < 41bp 0.700716288573067 0.478432562749137 0.27618372 0.15465167 prediction 0.401432577146135 Functional Loss - TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24834210 chr16:24834213 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_98452 0 0 1 0 1 TNRC6A chr16:24834195 3'AG 24834195 Downstream 19bp
chr15 22954272 22954272 1 + C T COAD 22954270 + 22954250 22954290 41 GGATGGAGAGCGTGTTCAACCACGCCATCCGGCACACCGTC GGATGGAGAGCGTGTTCAACCATGCCATCCGGCACACCGTC < 41bp 0.700714126407887 0.420721445365548 0.24076223 0.16696808 prediction 0.401428252815774 Functional Loss - CYFIP1 ENSG00000068793 CDS Human other chr15:22954270 chr15:22954272 synonymous SNV . 0 23 hm5C_associated_SNPs_98457 0 0 1 0 1 CYFIP1 chr15:22954210 3'AG 22954210 Downstream 63bp
chr15 38591738 38591738 1 + G T SARC 38591736 + 38591716 38591756 41 TTTATCCGTGGAGAGCGACTCAGGGACAAAATGGTAATGAA TTTATCCGTGGAGAGCGACTCATGGACAAAATGGTAATGAA < 41bp 0.700712515927041 0.359812780937173 0.92702913 0.37034607 prediction 0.401425031854082 Functional Loss - SPRED1 ENSG00000166068 CDS Human protein_coding chr15:38591736 chr15:38591738 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_98459 0 0 1 0 1 SPRED1 chr15:38591748 5'GT 38591748 Upstream 11bp
chr7 50450322 50450322 1 + G A HNSC 50450319 + 50450299 50450339 41 CCGGCACATCAAGCTGCATTCCGGGGAGAAGCCCTTCAAAT CCGGCACATCAAGCTGCATTCCGAGGAGAAGCCCTTCAAAT < 41bp 0.761757539341834 0.561046092966483 0.93432474 0.7500121 prediction 0.401422892750701 Functional Loss - IKZF1 ENSG00000185811 CDS Human protein_coding chr7:50450319 chr7:50450322 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_98460 0 0 1 0 2 IKZF1 chr7:50450238 3'AG 50450238 Downstream 85bp
chr7 50450322 50450322 1 + G A HNSC 50450319 + 50450299 50450339 41 CCGGCACATCAAGCTGCATTCCGGGGAGAAGCCCTTCAAAT CCGGCACATCAAGCTGCATTCCGAGGAGAAGCCCTTCAAAT < 41bp 0.761757539341834 0.561046092966483 0.93432474 0.7500121 prediction 0.401422892750701 Functional Loss - IKZF1 ENSG00000185811 CDS Human protein_coding chr7:50450319 chr7:50450322 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_98460 0 0 1 0 2 IKZF1 chr7:50450405 5'GT 50450405 Upstream 84bp
chr15 31664281 31664281 1 + C T STAD 31664279 + 31664259 31664299 41 CGCGCGCTCCGACGAGCTGGCGCGGCACTACCGCACACACA CGCGCGCTCCGACGAGCTGGCGTGGCACTACCGCACACACA < 41bp 0.700710250330678 0.450801130739282 0.8611518 0.7573827 prediction 0.401420500661357 Functional Loss - KLF13 ENSG00000169926 CDS Human protein_coding chr15:31664279 chr15:31664281 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_98461 0 0 0 0 1 KLF13 chr15:31664213 3'AG 31664213 Downstream 69bp
chr19 13910669 13910669 1 + C T UCEC 13910667 + 13910647 13910687 41 CCCAGAGGGCGAGCACGATGCCCGGGTGCCCTTTACCCGCG CCCAGAGGGCGAGCACGATGCCTGGGTGCCCTTTACCCGCG < 41bp 0.832452692410721 0.631744959108958 0.43251258 0.23526722 prediction 0.401415466603527 Functional Loss - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13910667 chr19:13910669 nonsynonymous SNV 0.973 3 23 hm5C_associated_SNPs_98465 0 0 0 0 1 ZSWIM4 chr19:13910735 5'GT 13910735 Upstream 67bp
chr17 19575061 19575061 1 + G T PAAD 19575059 + 19575039 19575079 41 AGTGGGATGGGAGCTTATCACGGAAAACATAGTTTTGATAC AGTGGGATGGGAGCTTATCACGTAAAACATAGTTTTGATAC < 41bp 0.910086164472844 0.709379432897603 0.7829722 0.27812988 prediction 0.401413463150484 Functional Loss - ALDH3A2 ENSG00000072210 CDS Human protein_coding chr17:19575059 chr17:19575061 stopgain 0.800 5 23 hm5C_associated_SNPs_98466 0 0 0 0 1 ALDH3A2 chr17:19575034 3'AG 19575034 Downstream 28bp
chr19 50185259 50185259 1 + C T COAD 50185256 + 50185236 50185276 41 AAGGACAAGGTGGTGCTGGACGTCGGCTCGGGCACCGGCAT AAGGACAAGGTGGTGCTGGACGTTGGCTCGGGCACCGGCAT < 41bp 0.70070353303858 0.491951136300101 0.4995654 0.50356966 prediction 0.40140706607716 Functional Loss - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50185256 chr19:50185259 synonymous SNV . 0 24 hm5C_associated_SNPs_98469 0 0 1 1 2 PRMT1 chr19:50185167 3'AG 50185167 Downstream 93bp
chr19 50185259 50185259 1 + C T COAD 50185256 + 50185236 50185276 41 AAGGACAAGGTGGTGCTGGACGTCGGCTCGGGCACCGGCAT AAGGACAAGGTGGTGCTGGACGTTGGCTCGGGCACCGGCAT < 41bp 0.70070353303858 0.491951136300101 0.4995654 0.50356966 prediction 0.40140706607716 Functional Loss - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50185256 chr19:50185259 synonymous SNV . 0 24 hm5C_associated_SNPs_98469 0 0 1 1 2 PRMT1 chr19:50185322 5'GT 50185322 Upstream 64bp
chr20 60861650 60861650 1 + C T PAAD 60861647 + 60861627 60861667 41 TCTGTGTTTCAGGATGAAGACTCCGGGAAGGCTGACAGCGA TCTGTGTTTCAGGATGAAGACTCTGGGAAGGCTGACAGCGA < 41bp 0.797932937578012 0.597229601391937 0.4520639 0.34555805 prediction 0.401406672372151 Functional Loss - OSBPL2 ENSG00000130703 CDS Human protein_coding chr20:60861647 chr20:60861650 synonymous SNV . 0 24 hm5C_associated_SNPs_98470 0 0 1 0 1 OSBPL2 chr20:60861639 3'AG 60861639 Downstream 12bp
chr17 53345361 53345361 1 + C T UCEC 53345359 + 53345339 53345379 41 CCAGCTTCCTCGGCTGCCCCCTCGGTCATGGACCTCAGCAG CCAGCTTCCTCGGCTGCCCCCTTGGTCATGGACCTCAGCAG < 41bp 0.867991542087316 0.667311077612925 0.106405586 0.055751055 prediction 0.401360928948782 Functional Loss - HLF ENSG00000108924 CDS Human protein_coding chr17:53345359 chr17:53345361 nonsynonymous SNV 0.993 0 23 hm5C_associated_SNPs_98485 0 0 0 0 1 HLF chr17:53345447 5'GT 53345447 Upstream 87bp
chr12 101491437 101491437 1 + G A LUAD 101491434 + 101491414 101491454 41 CTCTGTGTGTTGAAGATTTACAGGACACCCAGGTGCCTACT CTCTGTGTGTTGAAGATTTACAGAACACCCAGGTGCCTACT < 41bp 0.779630350150897 0.578949920134183 0.5942334 0.15631288 prediction 0.401360860033427 Functional Loss - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101491434 chr12:101491437 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_98486 0 0 0 0 2 ANO4 chr12:101491429 3'AG 101491429 Downstream 9bp
chr12 101491437 101491437 1 + G A LUAD 101491434 + 101491414 101491454 41 CTCTGTGTGTTGAAGATTTACAGGACACCCAGGTGCCTACT CTCTGTGTGTTGAAGATTTACAGAACACCCAGGTGCCTACT < 41bp 0.779630350150897 0.578949920134183 0.5942334 0.15631288 prediction 0.401360860033427 Functional Loss - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101491434 chr12:101491437 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_98486 0 0 0 0 2 ANO4 chr12:101491486 5'GT 101491486 Upstream 50bp
chr7 100369544 100369544 1 + A C rs76687973 100369543 + 100369523 100369563 41 GTGCATGGTCAGTGTGGGACCAAGGGCGACACCACAGCCCT GTGCATGGTCAGTGTGGGACCCAGGGCGACACCACAGCCCT < 41bp 0.700680059904511 0.458456762268735 0.8171531 0.8830525 prediction 0.401360119809022 Functional Loss - ZAN ENSG00000146839 CDS Human protein_coding chr7:100369543 chr7:100369544 nonsynonymous SNV 0.641 0 22 hm5C_associated_SNPs_98487 0 0 0 0 2 ZAN chr7:100369467 3'AG 100369467 Downstream 78bp
chr7 100369544 100369544 1 + A C rs76687973 100369543 + 100369523 100369563 41 GTGCATGGTCAGTGTGGGACCAAGGGCGACACCACAGCCCT GTGCATGGTCAGTGTGGGACCCAGGGCGACACCACAGCCCT < 41bp 0.700680059904511 0.458456762268735 0.8171531 0.8830525 prediction 0.401360119809022 Functional Loss - ZAN ENSG00000146839 CDS Human protein_coding chr7:100369543 chr7:100369544 nonsynonymous SNV 0.641 0 22 hm5C_associated_SNPs_98487 0 0 0 0 2 ZAN chr7:100369643 5'GT 100369643 Upstream 100bp
chr5 118872184 118872184 1 + C T rs28943592 118872181 + 118872161 118872201 41 TGCAAAAGGTGCTGCTGATACAACAATCATACTTTCAGATG TGCAAAAGGTGCTGCTGATACAATAATCATACTTTCAGATG < 41bp 0.755731026744014 0.555050972480391 0.06219688 0.13663018 prediction 0.401360108527244 Functional Loss - HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118872181 chr5:118872184 nonsynonymous SNV 0.992 3 24 hm5C_associated_SNPs_98488 3 0 1 0 2 HSD17B4 chr5:118872118 3'AG 118872118 Downstream 67bp
chr5 118872184 118872184 1 + C T rs28943592 118872181 + 118872161 118872201 41 TGCAAAAGGTGCTGCTGATACAACAATCATACTTTCAGATG TGCAAAAGGTGCTGCTGATACAATAATCATACTTTCAGATG < 41bp 0.755731026744014 0.555050972480391 0.06219688 0.13663018 prediction 0.401360108527244 Functional Loss - HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118872181 chr5:118872184 nonsynonymous SNV 0.992 3 24 hm5C_associated_SNPs_98488 3 0 1 0 2 HSD17B4 chr5:118872245 5'GT 118872245 Upstream 62bp
chr16 843165 843165 1 + C T COAD 843162 + 843142 843182 41 AGTTCCTGTACAGCCGGGGCCAGCGGGAGCTGAGCGTGCGG AGTTCCTGTACAGCCGGGGCCAGTGGGAGCTGAGCGTGCGG < 41bp 0.711738000843805 0.511062221045014 0.9055783 0.8888186 prediction 0.401351559597582 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:843162 chr16:843165 nonsynonymous SNV 0.198 1 24 hm5C_associated_SNPs_98494 0 0 1 0 1 CHTF18 chr16:843144 3'AG 843144 Downstream 22bp
chr17 37646908 37646908 1 + G A LUAD 37646905 + 37646885 37646925 41 TCCTCTCCCTCCAGAGCTCCCTGGTGGAGATCTGTCTCCCC TCCTCTCCCTCCAGAGCTCCCTGATGGAGATCTGTCTCCCC < 41bp 0.700675433397929 0.465368016754545 0.049461365 0.020518124 prediction 0.401350866795858 Functional Loss - CDK12 ENSG00000167258 CDS Human protein_coding chr17:37646905 chr17:37646908 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_98495 0 0 1 0 2 CDK12 chr17:37646810 3'AG 37646810 Downstream 99bp
chr17 37646908 37646908 1 + G A LUAD 37646905 + 37646885 37646925 41 TCCTCTCCCTCCAGAGCTCCCTGGTGGAGATCTGTCTCCCC TCCTCTCCCTCCAGAGCTCCCTGATGGAGATCTGTCTCCCC < 41bp 0.700675433397929 0.465368016754545 0.049461365 0.020518124 prediction 0.401350866795858 Functional Loss - CDK12 ENSG00000167258 CDS Human protein_coding chr17:37646905 chr17:37646908 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_98495 0 0 1 0 2 CDK12 chr17:37646986 5'GT 37646986 Upstream 79bp
chr17 37646907 37646907 1 + G T LUAD 37646905 + 37646885 37646925 41 TCCTCTCCCTCCAGAGCTCCCTGGTGGAGATCTGTCTCCCC TCCTCTCCCTCCAGAGCTCCCTTGTGGAGATCTGTCTCCCC < 41bp 0.700675433397929 0.353192969276503 0.049461365 0.020805806 prediction 0.401350866795858 Functional Loss - CDK12 ENSG00000167258 CDS Human protein_coding chr17:37646905 chr17:37646907 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_98496 0 0 1 0 2 CDK12 chr17:37646810 3'AG 37646810 Downstream 98bp
chr17 37646907 37646907 1 + G T LUAD 37646905 + 37646885 37646925 41 TCCTCTCCCTCCAGAGCTCCCTGGTGGAGATCTGTCTCCCC TCCTCTCCCTCCAGAGCTCCCTTGTGGAGATCTGTCTCCCC < 41bp 0.700675433397929 0.353192969276503 0.049461365 0.020805806 prediction 0.401350866795858 Functional Loss - CDK12 ENSG00000167258 CDS Human protein_coding chr17:37646905 chr17:37646907 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_98496 0 0 1 0 2 CDK12 chr17:37646986 5'GT 37646986 Upstream 80bp
chr16 31308885 31308885 1 + C T GBM 31308882 + 31308862 31308902 41 TGCTCCGTGGACGTGGACAGCAACGGCAGCACCGACCTGGT TGCTCCGTGGACGTGGACAGCAATGGCAGCACCGACCTGGT < 41bp 0.729283154242598 0.528608361768881 0.21728382 0.2638805 prediction 0.401349584947434 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31308882 chr16:31308885 synonymous SNV . 0 24 hm5C_associated_SNPs_98497 0 0 0 0 1 ITGAM chr16:31308975 5'GT 31308975 Upstream 91bp
chr19 35837567 35837567 1 + A T UCEC 35837565 + 35837545 35837585 41 TCGGGGAGCGGCCTCAGGCACAAGAAAATGTGGACTATGTG TCGGGGAGCGGCCTCAGGCACATGAAAATGTGGACTATGTG < 41bp 0.740196747068672 0.539525567397496 0.45272815 0.33598626 prediction 0.401342359342352 Functional Loss - CD22 ENSG00000012124 CDS Human protein_coding chr19:35837565 chr19:35837567 nonsynonymous SNV 0.014 0 23 hm5C_associated_SNPs_98498 0 0 0 0 1 CD22 chr19:35837469 3'AG 35837469 Downstream 99bp
chr12 50344952 50344952 1 + C T COAD 50344950 + 50344930 50344970 41 AGATCACGCCAGCAGACATCCGCGGGGACCTGGCTGTCAAT AGATCACGCCAGCAGACATCCGTGGGGACCTGGCTGTCAAT < 41bp 0.829053343704661 0.628386608477039 0.81964856 0.44749212 prediction 0.401333470455244 Functional Loss - AQP2 ENSG00000167580 CDS Human protein_coding chr12:50344950 chr12:50344952 synonymous SNV . 0 23 hm5C_associated_SNPs_98504 0 0 0 0 1 AQP2 chr12:50344973 5'GT 50344973 Upstream 22bp
chr18 77137262 77137262 1 + C T SKCM 77137260 + 77137240 77137280 41 CCAACAGATGTTGCCTTTATCACCACCGTGACCTTCCTGTG CCAACAGATGTTGCCTTTATCATCACCGTGACCTTCCTGTG < 41bp 0.700666017481952 0.43937481391627 0.28734976 0.19104597 prediction 0.401332034963904 Functional Loss - ATP9B ENSG00000166377 CDS Human protein_coding chr18:77137260 chr18:77137262 nonsynonymous SNV 0.829 1 23 hm5C_associated_SNPs_98505 0 0 0 1 1 ATP9B chr18:77137247 3'AG 77137247 Downstream 16bp
chr17 78156478 78156478 1 + C T BRCA 78156476 + 78156456 78156496 41 CTTGCTGGATTTGCTGAAGACTCGAGGGAAGAACGGGGCCA CTTGCTGGATTTGCTGAAGACTTGAGGGAAGAACGGGGCCA < 41bp 0.875169210315049 0.674505963564438 0.89961207 0.5047851 prediction 0.401326493501222 Functional Loss - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78156476 chr17:78156478 stopgain 0.994 1 23 hm5C_associated_SNPs_98506 0 0 0 0 1 CARD14 chr17:78156452 3'AG 78156452 Downstream 27bp
chr19 48917341 48917341 1 + C T rs563232119 48917338 + 48917318 48917358 41 TCCCTGGTGGTCATCTCCCTCACCAGAGACAGGACGTGGGA TCCCTGGTGGTCATCTCCCTCACTAGAGACAGGACGTGGGA < 41bp 0.700663032287646 0.477129960893126 0.41150436 0.1824502 prediction 0.401326064575293 Functional Loss - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48917338 chr19:48917341 synonymous SNV . 0 24 hm5C_associated_SNPs_98507 0 0 0 0 2 GRIN2D chr19:48917248 3'AG 48917248 Downstream 94bp
chr19 48917341 48917341 1 + C T rs563232119 48917338 + 48917318 48917358 41 TCCCTGGTGGTCATCTCCCTCACCAGAGACAGGACGTGGGA TCCCTGGTGGTCATCTCCCTCACTAGAGACAGGACGTGGGA < 41bp 0.700663032287646 0.477129960893126 0.41150436 0.1824502 prediction 0.401326064575293 Functional Loss - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48917338 chr19:48917341 synonymous SNV . 0 24 hm5C_associated_SNPs_98507 0 0 0 0 2 GRIN2D chr19:48917362 5'GT 48917362 Upstream 22bp
chr16 84228111 84228111 1 + C T PAAD 84228108 + 84228088 84228128 41 GGTGGTCTGCCCTGCGGGCACTGCGAATAGCAAGACGGAGG GGTGGTCTGCCCTGCGGGCACTGTGAATAGCAAGACGGAGG < 41bp 0.768033301248286 0.567374221602629 0.3687485 0.2677937 prediction 0.401318159291313 Functional Loss - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84228108 chr16:84228111 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_98510 0 0 0 0 2 ADAD2 chr16:84228048 3'AG 84228048 Downstream 64bp
chr16 84228111 84228111 1 + C T PAAD 84228108 + 84228088 84228128 41 GGTGGTCTGCCCTGCGGGCACTGCGAATAGCAAGACGGAGG GGTGGTCTGCCCTGCGGGCACTGTGAATAGCAAGACGGAGG < 41bp 0.768033301248286 0.567374221602629 0.3687485 0.2677937 prediction 0.401318159291313 Functional Loss - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84228108 chr16:84228111 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_98510 0 0 0 0 2 ADAD2 chr16:84228188 5'GT 84228188 Upstream 78bp
chr2 73471796 73471796 1 + C T KIRP 73471793 + 73471773 73471813 41 TGATGATGCTCGATGATTTGCTGCAGCTTAAAATGATTGGA TGATGATGCTCGATGATTTGCTGTAGCTTAAAATGATTGGA < 41bp 0.78348678955298 0.582830443017846 0.035550594 0.008152306 prediction 0.401312693070268 Functional Loss - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73471793 chr2:73471796 stopgain 1.000 1 24 hm5C_associated_SNPs_98512 0 0 1 0 1 CCT7 chr2:73471843 5'GT 73471843 Upstream 48bp
chr7 151716787 151716787 1 + C T UCEC 151716785 + 151716765 151716805 41 ATGTCACCTACGGAAATATTCGCGAGCGTGTTGAGTTAAGG ATGTCACCTACGGAAATATTCGTGAGCGTGTTGAGTTAAGG < 41bp 0.859794115121124 0.659139172080348 0.3117503 0.3415568 prediction 0.401309886081552 Functional Loss - GALNTL5 ENSG00000106648 CDS Human protein_coding chr7:151716785 chr7:151716787 synonymous SNV . 0 23 hm5C_associated_SNPs_98513 0 0 0 0 1 GALNTL5 chr7:151716731 3'AG 151716731 Downstream 57bp
chr19 39591436 39591436 1 + C T SKCM 39591434 + 39591414 39591454 41 CCACCGAGGTCTATTTCTTTCTCCATTATGGCCGCCACTTG CCACCGAGGTCTATTTCTTTCTTCATTATGGCCGCCACTTG < 41bp 0.889172315842107 0.688517596758366 0.9655714 0.19836596 prediction 0.401309438167482 Functional Loss - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39591434 chr19:39591436 nonsynonymous SNV 0.384 0 23 hm5C_associated_SNPs_98514 0 0 0 0 2 ACP7 chr19:39591379 3'AG 39591379 Downstream 58bp
chr19 39591436 39591436 1 + C T SKCM 39591434 + 39591414 39591454 41 CCACCGAGGTCTATTTCTTTCTCCATTATGGCCGCCACTTG CCACCGAGGTCTATTTCTTTCTTCATTATGGCCGCCACTTG < 41bp 0.889172315842107 0.688517596758366 0.9655714 0.19836596 prediction 0.401309438167482 Functional Loss - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39591434 chr19:39591436 nonsynonymous SNV 0.384 0 23 hm5C_associated_SNPs_98514 0 0 0 0 2 ACP7 chr19:39591493 5'GT 39591493 Upstream 58bp
chr8 125551447 125551447 1 + G T BRCA 125551444 + 125551424 125551464 41 CGTAATGGCGTTCTTGGCGTCGGGACCCTACCTGACCCATC CGTAATGGCGTTCTTGGCGTCGGTACCCTACCTGACCCATC < 41bp 0.935857965299737 0.735211624110179 0.8717724 0.26594403 prediction 0.401292682379115 Functional Loss - NDUFB9 ENSG00000147684 CDS Human protein_coding chr8:125551444 chr8:125551447 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_98523 0 0 1 0 1 NDUFB9 chr8:125551528 5'GT 125551528 Upstream 82bp
chr1 161196322 161196322 1 + C T SKCM 161196319 + 161196299 161196339 41 TGGCACCAATGGGGACTTTGCCCCGCCGGAGCCCCCGCCGA TGGCACCAATGGGGACTTTGCCCTGCCGGAGCCCCCGCCGA < 41bp 0.70064431301274 0.488282699540362 0.42512077 0.18574616 prediction 0.40128862602548 Functional Loss - TOMM40L ENSG00000158882 CDS Human protein_coding chr1:161196319 chr1:161196322 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_98525 0 0 0 0 1 TOMM40L chr1:161196394 5'GT 161196394 Upstream 73bp
chr17 18147239 18147239 1 + C T rs28523978 18147237 + 18147217 18147257 41 TCCAGGAAGGCCAGAACTATCCCGACCTCCACCTGCCCTGC TCCAGGAAGGCCAGAACTATCCTGACCTCCACCTGCCCTGC < 41bp 0.812534528118137 0.611894646929886 0.27443185 0.07645553 prediction 0.401279762376502 Functional Loss - LLGL1 ENSG00000131899 UTR3 Human protein_coding chr17:18147237 chr17:18147239 . . 0 23 hm5C_associated_SNPs_98527 0 0 0 0 1 LLGL1 chr17:18147222 3'AG 18147222 Downstream 18bp
chr6 167708093 167708093 1 + C T LUSC 167708090 + 167708070 167708110 41 CCTGTCCTCCATGTTCCTCCCACCGCTCCTCATCGAGAGGC CCTGTCCTCCATGTTCCTCCCACTGCTCCTCATCGAGAGGC < 41bp 0.752091802429343 0.551453106984933 0.014182836 0.01626259 prediction 0.401277390888821 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167708090 chr6:167708093 nonsynonymous SNV 0.023 3 24 hm5C_associated_SNPs_98528 0 0 0 0 2 UNC93A chr6:167708005 3'AG 167708005 Downstream 89bp
chr6 167708093 167708093 1 + C T LUSC 167708090 + 167708070 167708110 41 CCTGTCCTCCATGTTCCTCCCACCGCTCCTCATCGAGAGGC CCTGTCCTCCATGTTCCTCCCACTGCTCCTCATCGAGAGGC < 41bp 0.752091802429343 0.551453106984933 0.014182836 0.01626259 prediction 0.401277390888821 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167708090 chr6:167708093 nonsynonymous SNV 0.023 3 24 hm5C_associated_SNPs_98528 0 0 0 0 2 UNC93A chr6:167708186 5'GT 167708186 Upstream 94bp
chr11 9482530 9482530 1 + C T rs7107607 9482528 + 9482508 9482548 41 CTGGGGGCGGGCCTCAGACACACTATGCGGGTTGCGGGGCC CTGGGGGCGGGCCTCAGACACATTATGCGGGTTGCGGGGCC < 41bp 0.822469226343065 0.621832774732908 0.7383777 0.8230214 prediction 0.401272903220314 Functional Loss - ZNF143 ENSG00000166478 UTR5 Human protein_coding chr11:9482528 chr11:9482530 . . 0 23 hm5C_associated_SNPs_98529 0 0 1 0 1 ZNF143 chr11:9482623 5'GT 9482623 Upstream 94bp
chr12 123950153 123950153 1 + C T rs73412248 123950150 + 123950130 123950170 41 AAAGCGGGCAGCATTGATGGCACCGATGAAGACCCACACGA AAAGCGGGCAGCATTGATGGCACTGATGAAGACCCACACGA < 41bp 0.700630758059803 0.499581444106152 0.07556003 0.17790851 prediction 0.401261516119606 Functional Loss - SNRNP35 ENSG00000184209 CDS Human protein_coding chr12:123950150 chr12:123950153 synonymous SNV . 0 24 hm5C_associated_SNPs_98534 0 0 1 0 1 SNRNP35 chr12:123950085 3'AG 123950085 Downstream 69bp
chr10 99359853 99359853 1 + G T LIHC 99359850 + 99359830 99359870 41 AGGATTGGGCTGATTGTTCACAAGACCAGGAAGCAGGATTT AGGATTGGGCTGATTGTTCACAATACCAGGAAGCAGGATTT < 41bp 0.700626755553993 0.324250335676727 0.7187805 0.28679627 prediction 0.401253511107986 Functional Loss - HOGA1 ENSG00000241935 CDS Human protein_coding chr10:99359850 chr10:99359853 nonsynonymous SNV 0.984 3 24 hm5C_associated_SNPs_98536 0 0 0 0 2 HOGA1 chr10:99359824 3'AG 99359824 Downstream 30bp
chr10 99359853 99359853 1 + G T LIHC 99359850 + 99359830 99359870 41 AGGATTGGGCTGATTGTTCACAAGACCAGGAAGCAGGATTT AGGATTGGGCTGATTGTTCACAATACCAGGAAGCAGGATTT < 41bp 0.700626755553993 0.324250335676727 0.7187805 0.28679627 prediction 0.401253511107986 Functional Loss - HOGA1 ENSG00000241935 CDS Human protein_coding chr10:99359850 chr10:99359853 nonsynonymous SNV 0.984 3 24 hm5C_associated_SNPs_98536 0 0 0 0 2 HOGA1 chr10:99359920 5'GT 99359920 Upstream 68bp
chr6 32822044 32822044 1 + G A rs565577500 32822041 + 32822021 32822061 41 AGCACCAACCGGGGACTTACCCCGGGCGGGAGAAGTCCACA AGCACCAACCGGGGACTTACCCCAGGCGGGAGAAGTCCACA < 41bp 0.766048277310941 0.565422251155039 0.91911733 0.8932922 prediction 0.401252052311804 Functional Loss - PSMB9 ENSG00000240065 CDS Human protein_coding chr6:32822041 chr6:32822044 nonsynonymous SNV 0.138 0 24 hm5C_associated_SNPs_98537 0 0 1 0 1 PSMB9 chr6:32822066 5'GT 32822066 Upstream 23bp
chr6 108496054 108496054 1 + G T LUAD 108496050 + 108496030 108496070 41 TCTGTTCCAGGGAGGCTGTCCGGTGGACAAGACGCACAGAA TCTGTTCCAGGGAGGCTGTCCGGTTGACAAGACGCACAGAA < 41bp 0.72777732957066 0.527156709530347 0.87879 0.6572961 prediction 0.401241240080626 Functional Loss - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108496050 chr6:108496054 synonymous SNV . 0 25 hm5C_associated_SNPs_98540 0 0 0 0 2 NR2E1 chr6:108496040 3'AG 108496040 Downstream 15bp
chr6 108496054 108496054 1 + G T LUAD 108496050 + 108496030 108496070 41 TCTGTTCCAGGGAGGCTGTCCGGTGGACAAGACGCACAGAA TCTGTTCCAGGGAGGCTGTCCGGTTGACAAGACGCACAGAA < 41bp 0.72777732957066 0.527156709530347 0.87879 0.6572961 prediction 0.401241240080626 Functional Loss - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108496050 chr6:108496054 synonymous SNV . 0 25 hm5C_associated_SNPs_98540 0 0 0 0 2 NR2E1 chr6:108496127 5'GT 108496127 Upstream 74bp
chrX 68059873 68059873 1 + G A CESC 68059870 + 68059850 68059890 41 AAGGAGGCAGACAACACTGTCAAGATGGCCACACAGGCCCC AAGGAGGCAGACAACACTGTCAAAATGGCCACACAGGCCCC < 41bp 0.836919379758528 0.63630254105891 0.9426017 0.9311925 prediction 0.401233677399237 Functional Loss - EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059870 chrX:68059873 synonymous SNV . 0 24 hm5C_associated_SNPs_98542 0 0 0 0 2 EFNB1 chrX:68059803 3'AG 68059803 Downstream 71bp
chrX 68059873 68059873 1 + G A CESC 68059870 + 68059850 68059890 41 AAGGAGGCAGACAACACTGTCAAGATGGCCACACAGGCCCC AAGGAGGCAGACAACACTGTCAAAATGGCCACACAGGCCCC < 41bp 0.836919379758528 0.63630254105891 0.9426017 0.9311925 prediction 0.401233677399237 Functional Loss - EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059870 chrX:68059873 synonymous SNV . 0 24 hm5C_associated_SNPs_98542 0 0 0 0 2 EFNB1 chrX:68059931 5'GT 68059931 Upstream 59bp
chr10 3146127 3146127 1 + C T UCEC 3146125 + 3146105 3146145 41 GTCGTCGACGCCATCATGACCACGGCCCAGAGGTAAAGCGC GTCGTCGACGCCATCATGACCATGGCCCAGAGGTAAAGCGC < 41bp 0.700616438283797 0.450012871826399 0.21459633 0.08900431 prediction 0.401232876567595 Functional Loss - PFKP ENSG00000067057 CDS Human protein_coding chr10:3146125 chr10:3146127 nonsynonymous SNV 0.892 5 23 hm5C_associated_SNPs_98543 0 0 1 0 1 PFKP chr10:3146136 5'GT 3146136 Upstream 10bp
chr8 142352442 142352442 1 + C T rs116723105 142352440 + 142352420 142352460 41 GTCTGGCTTCTTTCACTTAGCACGGTGGCTTCAGGTCCCTC GTCTGGCTTCTTTCACTTAGCATGGTGGCTTCAGGTCCCTC < 41bp 0.731610787524929 0.530996670895707 0.8948858 0.89353585 prediction 0.401228233258444 Functional Loss - LINC01300 ENSG00000253595 ncRNA_exonic Human antisense chr8:142352440 chr8:142352442 . . 0 23 hm5C_associated_SNPs_98544 0 0 0 0 1 LINC01300 chr8:142352440 3'AG 142352440 Downstream 3bp
chr11 69462901 69462901 1 + G A SKCM 69462898 + 69462878 69462918 41 CGCTTCCTCTCCAGAGTGATCAAGTGTGACCCGGTAAGTGA CGCTTCCTCTCCAGAGTGATCAAATGTGACCCGGTAAGTGA < 41bp 0.700613735096216 0.450423452744341 0.89501774 0.7272949 prediction 0.401227470192433 Functional Loss - CCND1 ENSG00000110092 CDS Human protein_coding chr11:69462898 chr11:69462901 synonymous SNV . 0 24 hm5C_associated_SNPs_98545 0 0 1 0 1 CCND1 chr11:69462910 5'GT 69462910 Upstream 10bp
chr7 5112576 5112576 1 + G C HNSC 5112572 + 5112552 5112592 41 GGAGTCGGGGCTGGCGGAGACGGAGAGCTGCGGGCAGACTC GGAGTCGGGGCTGGCGGAGACGGACAGCTGCGGGCAGACTC < 41bp 0.891119567179135 0.690506610266608 0.90244836 0.673922 prediction 0.401225913825054 Functional Loss - RBAKDN ENSG00000272968 CDS Human protein_coding chr7:5112572 chr7:5112576 nonsynonymous SNV 0.027 1 25 hm5C_associated_SNPs_98546 0 0 0 0 1 RBAKDN chr7:5112553 3'AG 5112553 Downstream 24bp
chr10 61007400 61007400 1 - T G LUSC 61007404 - 61007384 61007424 41 AGACTATTAGAGGTCCTCATCAGCAAGCAAGATGTGGCCAA AGACTATTAGAGGTCCTCATCAGCCAGCAAGATGTGGCCAA < 41bp 0.700612394386525 0.299740820625533 0.21290866 0.17090997 prediction 0.401224788773051 Functional Loss - FAM13C ENSG00000148541 CDS Human protein_coding chr10:61007404 chr10:61007400 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_98548 0 0 0 0 1 FAM13C chr10:61007497 3'AG 61007497 Downstream 98bp
chr2 220366242 220366242 1 + T C STAD 220366241 + 220366221 220366261 41 GCTCATTGGCTTCTACCAACCTGATGAGCCCCTCACCCAGT GCTCATTGGCTTCTACCAACCCGATGAGCCCCTCACCCAGT < 41bp 0.700610885099181 0.449597866553524 0.17825702 0.4274186 prediction 0.401221770198361 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220366241 chr2:220366242 synonymous SNV . 0 22 hm5C_associated_SNPs_98550 0 0 0 0 2 GMPPA chr2:220366198 3'AG 220366198 Downstream 45bp
chr2 220366242 220366242 1 + T C STAD 220366241 + 220366221 220366261 41 GCTCATTGGCTTCTACCAACCTGATGAGCCCCTCACCCAGT GCTCATTGGCTTCTACCAACCCGATGAGCCCCTCACCCAGT < 41bp 0.700610885099181 0.449597866553524 0.17825702 0.4274186 prediction 0.401221770198361 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220366241 chr2:220366242 synonymous SNV . 0 22 hm5C_associated_SNPs_98550 0 0 0 0 2 GMPPA chr2:220366301 5'GT 220366301 Upstream 60bp
chr7 71175863 71175863 1 + G T LUAD 71175860 + 71175840 71175880 41 AGAGTCGGCTGCCCCAGCTCCTGGACTGCGACAAGGTCAAG AGAGTCGGCTGCCCCAGCTCCTGTACTGCGACAAGGTCAAG < 41bp 0.700609813415815 0.339904146355201 0.3019697 0.18346402 prediction 0.401219626831629 Functional Loss - GALNT17 ENSG00000185274 CDS Human protein_coding chr7:71175860 chr7:71175863 nonsynonymous SNV 0.980 2 24 hm5C_associated_SNPs_98551 0 0 0 0 1 GALNT17 chr7:71175913 5'GT 71175913 Upstream 51bp
chr6 39040696 39040696 1 + C T UCEC 39040693 + 39040673 39040713 41 ACCTGTTTGCATCCTTCATCCTGCGAGCATTGTCCGTCTTC ACCTGTTTGCATCCTTCATCCTGTGAGCATTGTCCGTCTTC < 41bp 0.700606918264257 0.474413725257091 0.10385084 0.08370373 prediction 0.401213836528514 Functional Loss - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39040693 chr6:39040696 stopgain 0.981 1 24 hm5C_associated_SNPs_98555 0 0 0 0 2 GLP1R chr6:39040638 3'AG 39040638 Downstream 59bp
chr6 39040696 39040696 1 + C T UCEC 39040693 + 39040673 39040713 41 ACCTGTTTGCATCCTTCATCCTGCGAGCATTGTCCGTCTTC ACCTGTTTGCATCCTTCATCCTGTGAGCATTGTCCGTCTTC < 41bp 0.700606918264257 0.474413725257091 0.10385084 0.08370373 prediction 0.401213836528514 Functional Loss - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39040693 chr6:39040696 stopgain 0.981 1 24 hm5C_associated_SNPs_98555 0 0 0 0 2 GLP1R chr6:39040791 5'GT 39040791 Upstream 96bp
chr1 24117721 24117721 1 + G A rs539091809 24117718 + 24117698 24117738 41 AGGAGAATCGCCCAAGCGGCCTCGGAAGTCCCAGGGAGTGG AGGAGAATCGCCCAAGCGGCCTCAGAAGTCCCAGGGAGTGG < 41bp 0.739164787897516 0.538558617726347 0.18882951 0.11639908 prediction 0.401212340342337 Functional Loss - LYPLA2 ENSG00000011009 UTR5 Human protein_coding chr1:24117718 chr1:24117721 . . 0 24 hm5C_associated_SNPs_98556 0 0 1 0 1 LYPLA2 chr1:24117740 5'GT 24117740 Upstream 20bp
chr15 43476512 43476512 1 + C T COAD 43476509 + 43476489 43476529 41 ACATGTGTTGGAGCTTGCTGCAGCGGTGCTTTGGTCACAAC ACATGTGTTGGAGCTTGCTGCAGTGGTGCTTTGGTCACAAC < 41bp 0.759649415769352 0.559043686421107 0.44534975 0.27377573 prediction 0.40121145869649 Functional Loss - TMEM62 ENSG00000137842 CDS Human protein_coding chr15:43476509 chr15:43476512 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_98558 0 0 1 0 1 TMEM62 chr15:43476458 3'AG 43476458 Downstream 55bp
chr8 73939209 73939209 1 + G A CESC 73939206 + 73939186 73939226 41 AGTAGTAGAAAGCAAAAGGACAAGAACAATAACTTCTCAAG AGTAGTAGAAAGCAAAAGGACAAAAACAATAACTTCTCAAG < 41bp 0.796426596190964 0.595822090804123 0.20020571 0.13470745 prediction 0.401209010773681 Functional Loss - TERF1 ENSG00000147601 CDS Human protein_coding chr8:73939206 chr8:73939209 nonsynonymous SNV 0.081 1 24 hm5C_associated_SNPs_98560 0 0 1 0 2 TERF1 chr8:73939175 3'AG 73939175 Downstream 35bp
chr8 73939209 73939209 1 + G A CESC 73939206 + 73939186 73939226 41 AGTAGTAGAAAGCAAAAGGACAAGAACAATAACTTCTCAAG AGTAGTAGAAAGCAAAAGGACAAAAACAATAACTTCTCAAG < 41bp 0.796426596190964 0.595822090804123 0.20020571 0.13470745 prediction 0.401209010773681 Functional Loss - TERF1 ENSG00000147601 CDS Human protein_coding chr8:73939206 chr8:73939209 nonsynonymous SNV 0.081 1 24 hm5C_associated_SNPs_98560 0 0 1 0 2 TERF1 chr8:73939287 5'GT 73939287 Upstream 79bp
chr1 171061849 171061849 1 + C T UCEC 171061847 + 171061827 171061867 41 GCTGGTGTGAGTGGCTTGGCCTCCATCAGGAGCTGTCTGGA GCTGGTGTGAGTGGCTTGGCCTTCATCAGGAGCTGTCTGGA < 41bp 0.844895891087533 0.644291555322598 0.9492466 0.10760921 prediction 0.401208671529871 Functional Loss - FMO3 ENSG00000007933 CDS Human protein_coding chr1:171061847 chr1:171061849 nonsynonymous SNV 0.893 3 23 hm5C_associated_SNPs_98561 0 0 0 0 2 FMO3 chr1:171061794 3'AG 171061794 Downstream 56bp
chr1 171061849 171061849 1 + C T UCEC 171061847 + 171061827 171061867 41 GCTGGTGTGAGTGGCTTGGCCTCCATCAGGAGCTGTCTGGA GCTGGTGTGAGTGGCTTGGCCTTCATCAGGAGCTGTCTGGA < 41bp 0.844895891087533 0.644291555322598 0.9492466 0.10760921 prediction 0.401208671529871 Functional Loss - FMO3 ENSG00000007933 CDS Human protein_coding chr1:171061847 chr1:171061849 nonsynonymous SNV 0.893 3 23 hm5C_associated_SNPs_98561 0 0 0 0 2 FMO3 chr1:171061931 5'GT 171061931 Upstream 83bp
chr9 17791325 17791325 1 + G A CESC 17791322 + 17791302 17791342 41 TGCAGCAAGTCACGGTCAGACTGGAAGAAAGGTATTCTACA TGCAGCAAGTCACGGTCAGACTGAAAGAAAGGTATTCTACA < 41bp 0.812407882033689 0.611805211977958 0.11192837 0.0670574 prediction 0.401205340111462 Functional Loss - SH3GL2 ENSG00000107295 CDS Human protein_coding chr9:17791322 chr9:17791325 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_98564 0 0 0 0 2 SH3GL2 chr9:17791229 3'AG 17791229 Downstream 97bp
chr9 17791325 17791325 1 + G A CESC 17791322 + 17791302 17791342 41 TGCAGCAAGTCACGGTCAGACTGGAAGAAAGGTATTCTACA TGCAGCAAGTCACGGTCAGACTGAAAGAAAGGTATTCTACA < 41bp 0.812407882033689 0.611805211977958 0.11192837 0.0670574 prediction 0.401205340111462 Functional Loss - SH3GL2 ENSG00000107295 CDS Human protein_coding chr9:17791322 chr9:17791325 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_98564 0 0 0 0 2 SH3GL2 chr9:17791332 5'GT 17791332 Upstream 8bp
chr5 60241199 60241199 1 + G T UCEC 60241196 + 60241176 60241216 41 TACTACTACATCCCGCAGTACAAGAACTGGAGAGGTGAGGT TACTACTACATCCCGCAGTACAATAACTGGAGAGGTGAGGT < 41bp 0.700600954490185 0.315331626154085 0.22310373 0.21682382 prediction 0.40120190898037 Functional Loss - NDUFAF2 ENSG00000164182 CDS Human protein_coding chr5:60241196 chr5:60241199 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_98565 0 0 1 1 2 NDUFAF2 chr5:60241209 5'GT 60241209 Upstream 11bp
chr5 60241199 60241199 1 + G T UCEC 60241196 + 60241176 60241216 41 TACTACTACATCCCGCAGTACAAGAACTGGAGAGGTGAGGT TACTACTACATCCCGCAGTACAATAACTGGAGAGGTGAGGT < 41bp 0.700600954490185 0.315331626154085 0.22310373 0.21682382 prediction 0.40120190898037 Functional Loss - NDUFAF2 ENSG00000164182 CDS Human protein_coding chr5:60241196 chr5:60241199 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_98565 0 0 1 1 2 NDUFAF2 chr5:60241255 5'GT 60241255 Upstream 57bp
chr10 70930990 70930990 1 + G A ESCA 70930987 + 70930967 70931007 41 TTCACCAGCGATTTGAATCTCCAGAATCACAGGCATCTGCC TTCACCAGCGATTTGAATCTCCAAAATCACAGGCATCTGCC < 41bp 0.744201093836349 0.543600707753245 0.5920828 0.13041773 prediction 0.401200772166208 Functional Loss - VPS26A ENSG00000122958 CDS Human protein_coding chr10:70930987 chr10:70930990 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_98566 0 0 1 0 1 VPS26A chr10:70930912 3'AG 70930912 Downstream 79bp
chr2 33752236 33752236 1 + C T LUSC 33752233 + 33752213 33752253 41 GAAATGACAGAGTTGGTCTCCTCCAACGGCAATTACTGCAA GAAATGACAGAGTTGGTCTCCTCTAACGGCAATTACTGCAA < 41bp 0.700597367707258 0.461362275838793 0.955319 0.9249084 prediction 0.401194735414517 Functional Loss - RASGRP3 ENSG00000152689 CDS Human protein_coding chr2:33752233 chr2:33752236 synonymous SNV . 0 24 hm5C_associated_SNPs_98567 0 0 0 0 1 RASGRP3 chr2:33752204 3'AG 33752204 Downstream 33bp
chr1 117560036 117560036 1 + G A rs17235766 117560033 + 117560013 117560053 41 GTGCAGAGTATCTGAGAAGTCTCGGAACCAGGCCAGAGATC GTGCAGAGTATCTGAGAAGTCTCAGAACCAGGCCAGAGATC < 41bp 0.834214895524203 0.633623008114219 0.2965765 0.09903219 prediction 0.401183774819969 Functional Loss - CD101 ENSG00000134256 CDS Human protein_coding chr1:117560033 chr1:117560036 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_98571 0 0 0 0 1 CD101 chr1:117560095 5'GT 117560095 Upstream 60bp
chr1 67792457 67792457 1 + A C UCEC 67792453 + 67792433 67792473 41 CTCAAAATTTATCCTGCATACAGAAGGGAGAACAGGGGACT CTCAAAATTTATCCTGCATACAGACGGGAGAACAGGGGACT < 41bp 0.700591406320645 0.28934687081845 0.08547208 0.044776678 prediction 0.40118281264129 Functional Loss - IL12RB2 ENSG00000081985 CDS Human protein_coding chr1:67792453 chr1:67792457 nonsynonymous SNV 0.344 0 25 hm5C_associated_SNPs_98572 0 0 0 0 2 IL12RB2 chr1:67792418 3'AG 67792418 Downstream 40bp
chr1 67792457 67792457 1 + A C UCEC 67792453 + 67792433 67792473 41 CTCAAAATTTATCCTGCATACAGAAGGGAGAACAGGGGACT CTCAAAATTTATCCTGCATACAGACGGGAGAACAGGGGACT < 41bp 0.700591406320645 0.28934687081845 0.08547208 0.044776678 prediction 0.40118281264129 Functional Loss - IL12RB2 ENSG00000081985 CDS Human protein_coding chr1:67792453 chr1:67792457 nonsynonymous SNV 0.344 0 25 hm5C_associated_SNPs_98572 0 0 0 0 2 IL12RB2 chr1:67792532 5'GT 67792532 Upstream 76bp
chr21 35144551 35144551 1 + A T SKCM 35144547 + 35144527 35144567 41 AGCGCAAAAGACAACTGGAACTGGAGAAGCAACTGGAAAAG AGCGCAAAAGACAACTGGAACTGGTGAAGCAACTGGAAAAG < 41bp 0.870435160274936 0.66984971709593 0.79429114 0.38725922 prediction 0.401170886358013 Functional Loss - ITSN1 ENSG00000205726 CDS Human protein_coding chr21:35144547 chr21:35144551 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_98574 0 0 1 0 1 ITSN1 chr21:35144627 5'GT 35144627 Upstream 77bp
chr22 21363718 21363718 1 - C G SKCM 21363721 - 21363701 21363741 41 CAGATCTGTGCATGGGACTGCAGGGCTTCCTCATCTTCCAC CAGATCTGTGCATGGGACTGCAGCGCTTCCTCATCTTCCAC < 41bp 0.728611298633764 0.528026309884138 0.5981483 0.1471366 prediction 0.401169977499253 Functional Loss - THAP7-AS1;TUBA3FP ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21363721 chr22:21363718 . . 0 24 hm5C_associated_SNPs_98576 0 0 1 0 2 THAP7-AS1;TUBA3FP chr22:21363738 3'AG 21363738 Downstream 21bp
chr22 21363718 21363718 1 - C G SKCM 21363721 - 21363701 21363741 41 CAGATCTGTGCATGGGACTGCAGGGCTTCCTCATCTTCCAC CAGATCTGTGCATGGGACTGCAGCGCTTCCTCATCTTCCAC < 41bp 0.728611298633764 0.528026309884138 0.5981483 0.1471366 prediction 0.401169977499253 Functional Loss - THAP7-AS1;TUBA3FP ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21363721 chr22:21363718 . . 0 24 hm5C_associated_SNPs_98576 0 0 1 0 2 THAP7-AS1;TUBA3FP chr22:21363742 3'AG 21363742 Downstream 25bp
chr15 85411403 85411403 1 + C T LUAD 85411400 + 85411380 85411420 41 TGGACCGGTTCGCCTCCTCCCACCAGTGCAATGCCTACTGT TGGACCGGTTCGCCTCCTCCCACTAGTGCAATGCCTACTGT < 41bp 0.700580586179816 0.482438639085364 0.2798189 0.13088167 prediction 0.401161172359632 Functional Loss - ALPK3 ENSG00000136383 CDS Human protein_coding chr15:85411400 chr15:85411403 stopgain 0.993 0 24 hm5C_associated_SNPs_98578 0 0 0 0 1 ALPK3 chr15:85411342 3'AG 85411342 Downstream 62bp
chr14 31071311 31071311 1 + T C COAD 31071310 + 31071290 31071330 41 TAAATTACCCAGACAGTCACCTGGATCCCAGAGTAAAGATC TAAATTACCCAGACAGTCACCCGGATCCCAGAGTAAAGATC < 41bp 0.700579936435198 0.445976348465711 0.12899452 0.2718814 prediction 0.401159872870395 Functional Loss - G2E3 ENSG00000092140 CDS Human protein_coding chr14:31071310 chr14:31071311 synonymous SNV . 0 22 hm5C_associated_SNPs_98579 0 0 1 0 1 G2E3 chr14:31071337 5'GT 31071337 Upstream 27bp
chr17 43893884 43893884 1 + T C rs8077279 43893883 + 43893863 43893903 41 CACCTGCTGGCCCCGCAGCCCTGCGGGGCAGCTAGTGGTTC CACCTGCTGGCCCCGCAGCCCCGCGGGGCAGCTAGTGGTTC < 41bp 0.708389690855087 0.507811187072269 0.37586796 0.47578418 prediction 0.401157007565635 Functional Loss - CRHR1 ENSG00000120088 CDS Human protein_coding chr17:43893883 chr17:43893884 synonymous SNV . 0 22 hm5C_associated_SNPs_98580 0 0 0 1 2 CRHR1 chr17:43893829 3'AG 43893829 Downstream 56bp
chr17 43893884 43893884 1 + T C rs8077279 43893883 + 43893863 43893903 41 CACCTGCTGGCCCCGCAGCCCTGCGGGGCAGCTAGTGGTTC CACCTGCTGGCCCCGCAGCCCCGCGGGGCAGCTAGTGGTTC < 41bp 0.708389690855087 0.507811187072269 0.37586796 0.47578418 prediction 0.401157007565635 Functional Loss - CRHR1 ENSG00000120088 CDS Human protein_coding chr17:43893883 chr17:43893884 synonymous SNV . 0 22 hm5C_associated_SNPs_98580 0 0 0 1 2 CRHR1;LINC02210-CRHR1 chr17:43893948 5'GT 43893948 Upstream 65bp
chr2 111666433 111666433 1 + C T HNSC 111666430 + 111666410 111666450 41 TTGAGCACCAAACACAGACCCTGCGGCTGATGCCCCACCTG TTGAGCACCAAACACAGACCCTGTGGCTGATGCCCCACCTG < 41bp 0.700577030123263 0.477943815266934 0.26945686 0.17250162 prediction 0.401154060246526 Functional Loss - ACOXL ENSG00000153093 CDS Human protein_coding chr2:111666430 chr2:111666433 nonsynonymous SNV 0.177 1 24 hm5C_associated_SNPs_98581 0 0 0 0 2 ACOXL chr2:111666366 3'AG 111666366 Downstream 68bp
chr2 111666433 111666433 1 + C T HNSC 111666430 + 111666410 111666450 41 TTGAGCACCAAACACAGACCCTGCGGCTGATGCCCCACCTG TTGAGCACCAAACACAGACCCTGTGGCTGATGCCCCACCTG < 41bp 0.700577030123263 0.477943815266934 0.26945686 0.17250162 prediction 0.401154060246526 Functional Loss - ACOXL ENSG00000153093 CDS Human protein_coding chr2:111666430 chr2:111666433 nonsynonymous SNV 0.177 1 24 hm5C_associated_SNPs_98581 0 0 0 0 2 ACOXL chr2:111666482 5'GT 111666482 Upstream 50bp
chr1 160321553 160321553 1 + G T OV 160321549 + 160321529 160321569 41 GCTAAAGCCTATAAATACAACTGGGACATTAAAGCCTGACG GCTAAAGCCTATAAATACAACTGGTACATTAAAGCCTGACG < 41bp 0.700573690578594 0.492041018881869 0.20861498 0.16838112 prediction 0.401147381157188 Functional Loss - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160321549 chr1:160321553 synonymous SNV . 0 25 hm5C_associated_SNPs_98584 0 0 1 0 2 NCSTN chr1:160321486 3'AG 160321486 Downstream 68bp
chr1 160321553 160321553 1 + G T OV 160321549 + 160321529 160321569 41 GCTAAAGCCTATAAATACAACTGGGACATTAAAGCCTGACG GCTAAAGCCTATAAATACAACTGGTACATTAAAGCCTGACG < 41bp 0.700573690578594 0.492041018881869 0.20861498 0.16838112 prediction 0.401147381157188 Functional Loss - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160321549 chr1:160321553 synonymous SNV . 0 25 hm5C_associated_SNPs_98584 0 0 1 0 2 NCSTN chr1:160321595 5'GT 160321595 Upstream 43bp
chr1 168165865 168165865 1 + G A UCEC 168165862 + 168165842 168165882 41 GTGCTTATCAGAATGAATGACACGAGACTTTACCATGAGGT GTGCTTATCAGAATGAATGACACAAGACTTTACCATGAGGT < 41bp 0.710416239234696 0.509842648050574 0.17810845 0.12284276 prediction 0.401147182368245 Functional Loss - TIPRL ENSG00000143155 CDS Human protein_coding chr1:168165862 chr1:168165865 synonymous SNV . 0 24 hm5C_associated_SNPs_98585 0 0 1 0 2 TIPRL chr1:168165785 3'AG 168165785 Downstream 81bp
chr1 168165865 168165865 1 + G A UCEC 168165862 + 168165842 168165882 41 GTGCTTATCAGAATGAATGACACGAGACTTTACCATGAGGT GTGCTTATCAGAATGAATGACACAAGACTTTACCATGAGGT < 41bp 0.710416239234696 0.509842648050574 0.17810845 0.12284276 prediction 0.401147182368245 Functional Loss - TIPRL ENSG00000143155 CDS Human protein_coding chr1:168165862 chr1:168165865 synonymous SNV . 0 24 hm5C_associated_SNPs_98585 0 0 1 0 2 TIPRL chr1:168165880 5'GT 168165880 Upstream 16bp
chr3 183885740 183885740 1 + G T LUAD 183885736 + 183885716 183885756 41 ATGTGGAAGGCTTCACGGACCGGAGGGAGGCCCGCAAGTAT ATGTGGAAGGCTTCACGGACCGGATGGAGGCCCGCAAGTAT < 41bp 0.717525422435343 0.51695267918109 0.9127778 0.88765574 prediction 0.401145486508504 Functional Loss - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183885736 chr3:183885740 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_98586 0 0 1 0 1 DVL3 chr3:183885686 3'AG 183885686 Downstream 55bp
chrX 103041549 103041549 1 + C T STAD 103041546 + 103041526 103041566 41 CTGCGGCAAGGGCCTGAGCGCAACGGTAACAGGGGGCCAGA CTGCGGCAAGGGCCTGAGCGCAATGGTAACAGGGGGCCAGA < 41bp 0.763707678095827 0.563137272445565 0.32262027 0.24712345 prediction 0.401140811300524 Functional Loss - PLP1 ENSG00000123560 CDS Human protein_coding chrX:103041546 chrX:103041549 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_98588 0 0 1 0 1 PLP1 chrX:103041550 5'GT 103041550 Upstream 2bp
chr9 140100321 140100321 1 + G T BLCA 140100317 + 140100297 140100337 41 GACTGGGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTGCCGG GACTGGGTCGCGAGGCCCGGCGCCTGCGGCTTGGCTGCCGG < 41bp 0.730839240396093 0.530275138071181 0.9079262 0.7031447 prediction 0.401128204649823 Functional Loss - NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100317 chr9:140100321 nonsynonymous SNV 0.947 1 25 hm5C_associated_SNPs_98593 0 0 0 0 1 NDOR1 chr9:140100364 5'GT 140100364 Upstream 44bp
chr12 6342622 6342622 1 + G T STAD 6342618 + 6342598 6342638 41 GATATTCGCCATTGAAATAGCTGCGGCCATCTGGGGATATT GATATTCGCCATTGAAATAGCTGCTGCCATCTGGGGATATT < 41bp 0.72444214984617 0.523880320282844 0.2173962 0.06923777 prediction 0.401123659126651 Functional Loss - CD9 ENSG00000010278 CDS Human protein_coding chr12:6342618 chr12:6342622 synonymous SNV . 0 25 hm5C_associated_SNPs_98594 0 0 1 0 2 CD9 chr12:6342578 3'AG 6342578 Downstream 45bp
chr12 6342622 6342622 1 + G T STAD 6342618 + 6342598 6342638 41 GATATTCGCCATTGAAATAGCTGCGGCCATCTGGGGATATT GATATTCGCCATTGAAATAGCTGCTGCCATCTGGGGATATT < 41bp 0.72444214984617 0.523880320282844 0.2173962 0.06923777 prediction 0.401123659126651 Functional Loss - CD9 ENSG00000010278 CDS Human protein_coding chr12:6342618 chr12:6342622 synonymous SNV . 0 25 hm5C_associated_SNPs_98594 0 0 1 0 2 CD9 chr12:6342652 5'GT 6342652 Upstream 31bp
chr1 48694826 48694826 1 + G A LUAD 48694823 + 48694803 48694843 41 GAGGGATCCATCCAAGGTCACACGGGAGGACTGGGGTCAGG GAGGGATCCATCCAAGGTCACACAGGAGGACTGGGGTCAGG < 41bp 0.700561527094573 0.45966833782603 0.36116627 0.15501672 prediction 0.401123054189146 Functional Loss - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48694823 chr1:48694826 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_98595 0 0 1 0 3 SLC5A9 chr1:48694775 3'AG 48694775 Downstream 52bp
chr1 48694826 48694826 1 + G A LUAD 48694823 + 48694803 48694843 41 GAGGGATCCATCCAAGGTCACACGGGAGGACTGGGGTCAGG GAGGGATCCATCCAAGGTCACACAGGAGGACTGGGGTCAGG < 41bp 0.700561527094573 0.45966833782603 0.36116627 0.15501672 prediction 0.401123054189146 Functional Loss - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48694823 chr1:48694826 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_98595 0 0 1 0 3 SLC5A9 chr1:48694837 5'GT 48694837 Upstream 12bp
chr1 48694826 48694826 1 + G A LUAD 48694823 + 48694803 48694843 41 GAGGGATCCATCCAAGGTCACACGGGAGGACTGGGGTCAGG GAGGGATCCATCCAAGGTCACACAGGAGGACTGGGGTCAGG < 41bp 0.700561527094573 0.45966833782603 0.36116627 0.15501672 prediction 0.401123054189146 Functional Loss - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48694823 chr1:48694826 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_98595 0 0 1 0 3 SLC5A9 chr1:48694849 5'GT 48694849 Upstream 24bp
chr17 16335107 16335107 1 + C T UCEC 16335104 + 16335084 16335124 41 CACATGTGTTCCAGGTCATCCTGCGGGACCTGCTGCGCTTC CACATGTGTTCCAGGTCATCCTGTGGGACCTGCTGCGCTTC < 41bp 0.752241528603467 0.551682324648925 0.4958352 0.32208657 prediction 0.401118407909084 Functional Loss - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16335104 chr17:16335107 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_98596 0 0 0 0 2 TRPV2 chr17:16335098 3'AG 16335098 Downstream 10bp
chr17 16335107 16335107 1 + C T UCEC 16335104 + 16335084 16335124 41 CACATGTGTTCCAGGTCATCCTGCGGGACCTGCTGCGCTTC CACATGTGTTCCAGGTCATCCTGTGGGACCTGCTGCGCTTC < 41bp 0.752241528603467 0.551682324648925 0.4958352 0.32208657 prediction 0.401118407909084 Functional Loss - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16335104 chr17:16335107 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_98596 0 0 0 0 2 TRPV2 chr17:16335164 5'GT 16335164 Upstream 58bp
chr5 74651260 74651260 1 + G A STAD 74651257 + 74651237 74651277 41 TGGCCCAGTTGTGCGTCTTCCACGTGCTTGTGACTCTGCAG TGGCCCAGTTGTGCGTCTTCCACATGCTTGTGACTCTGCAG < 41bp 0.700557129044105 0.458949728836896 0.42478317 0.28337926 prediction 0.401114258088209 Functional Loss - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74651257 chr5:74651260 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_98598 0 0 1 0 2 HMGCR chr5:74651190 3'AG 74651190 Downstream 71bp
chr5 74651260 74651260 1 + G A STAD 74651257 + 74651237 74651277 41 TGGCCCAGTTGTGCGTCTTCCACGTGCTTGTGACTCTGCAG TGGCCCAGTTGTGCGTCTTCCACATGCTTGTGACTCTGCAG < 41bp 0.700557129044105 0.458949728836896 0.42478317 0.28337926 prediction 0.401114258088209 Functional Loss - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74651257 chr5:74651260 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_98598 0 0 1 0 2 HMGCR chr5:74651347 5'GT 74651347 Upstream 88bp
chr14 51716059 51716059 1 + A C rs184982115 51716058 + 51716038 51716078 41 TTTTAGGATGAGTAGTATGTCAGCACTCTTTCAGCTATCTA TTTTAGGATGAGTAGTATGTCCGCACTCTTTCAGCTATCTA < 41bp 0.700555601345184 0.452796088224877 0.061507583 0.023248851 prediction 0.401111202690368 Functional Loss - TMX1 ENSG00000139921 CDS Human protein_coding chr14:51716058 chr14:51716059 synonymous SNV . 0 22 hm5C_associated_SNPs_98599 0 0 1 0 1 TMX1 chr14:51716044 3'AG 51716044 Downstream 16bp
chr11 64083273 64083273 1 + C T rs41294422 64083271 + 64083251 64083291 41 ATGAAGCCGGCCGGGCTGGCCCCGGAGGGGGTGCTGAGCGG ATGAAGCCGGCCGGGCTGGCCCTGGAGGGGGTGCTGAGCGG < 41bp 0.836426174851013 0.635871326904703 0.6032195 0.33722228 prediction 0.40110969589262 Functional Loss - ESRRA ENSG00000173153 CDS Human protein_coding chr11:64083271 chr11:64083273 synonymous SNV . 0 23 hm5C_associated_SNPs_98601 0 0 0 0 1 ESRRA chr11:64083179 3'AG 64083179 Downstream 95bp
chr6 41318469 41318469 1 + A T SKCM 41318465 + 41318445 41318485 41 AGCTCAGGAGCCTGGATACCCAAAAAGCCACCTGCCACCTT AGCTCAGGAGCCTGGATACCCAAATAGCCACCTGCCACCTT < 41bp 0.892097383814941 0.691545068176526 0.09664452 0.31821728 prediction 0.401104631276832 Functional Loss - NCR2 ENSG00000096264 CDS Human protein_coding chr6:41318465 chr6:41318469 nonsynonymous SNV 0.146 3 25 hm5C_associated_SNPs_98602 0 0 0 2 1 NCR2 chr6:41318416 3'AG 41318416 Downstream 54bp
chr22 42205909 42205909 1 + C T SARC 42205906 + 42205886 42205926 41 AGAAGATGTTTGAGGTGAAGCGGCGGGAGCAGCTGTTGGCA AGAAGATGTTTGAGGTGAAGCGGTGGGAGCAGCTGTTGGCA < 41bp 0.735020736051817 0.534469077186002 0.8995554 0.8960078 prediction 0.401103317731631 Functional Loss - CCDC134 ENSG00000100147 CDS Human protein_coding chr22:42205906 chr22:42205909 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_98603 0 0 1 0 2 CCDC134 chr22:42205883 3'AG 42205883 Downstream 27bp
chr22 42205909 42205909 1 + C T SARC 42205906 + 42205886 42205926 41 AGAAGATGTTTGAGGTGAAGCGGCGGGAGCAGCTGTTGGCA AGAAGATGTTTGAGGTGAAGCGGTGGGAGCAGCTGTTGGCA < 41bp 0.735020736051817 0.534469077186002 0.8995554 0.8960078 prediction 0.401103317731631 Functional Loss - CCDC134 ENSG00000100147 CDS Human protein_coding chr22:42205906 chr22:42205909 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_98603 0 0 1 0 2 CCDC134 chr22:42206004 5'GT 42206004 Upstream 96bp
chr7 130023560 130023560 1 + C T rs61735158 130023557 + 130023537 130023577 41 TACGGGCAGGATGCAGCTTTCACCGCCATTCTCGACACCTT TACGGGCAGGATGCAGCTTTCACTGCCATTCTCGACACCTT < 41bp 0.700547944694509 0.484467249551252 0.24170735 0.13002026 prediction 0.401095889389018 Functional Loss - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130023557 chr7:130023560 synonymous SNV . 0 24 hm5C_associated_SNPs_98607 0 0 0 0 2 CPA1 chr7:130023525 3'AG 130023525 Downstream 36bp
chr7 130023560 130023560 1 + C T rs61735158 130023557 + 130023537 130023577 41 TACGGGCAGGATGCAGCTTTCACCGCCATTCTCGACACCTT TACGGGCAGGATGCAGCTTTCACTGCCATTCTCGACACCTT < 41bp 0.700547944694509 0.484467249551252 0.24170735 0.13002026 prediction 0.401095889389018 Functional Loss - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130023557 chr7:130023560 synonymous SNV . 0 24 hm5C_associated_SNPs_98607 0 0 0 0 2 CPA1 chr7:130023635 5'GT 130023635 Upstream 76bp
chr16 8738510 8738510 1 + G T COAD 8738507 + 8738487 8738527 41 CTGGAGCAGCTCGCAGATGGCAAGCTGCGCTTCGTGGTGGA CTGGAGCAGCTCGCAGATGGCAATCTGCGCTTCGTGGTGGA < 41bp 0.700547882250392 0.296214693813578 0.31784138 0.2673406 prediction 0.401095764500784 Functional Loss - METTL22 ENSG00000067365 CDS Human protein_coding chr16:8738507 chr16:8738510 nonsynonymous SNV 0.077 0 24 hm5C_associated_SNPs_98608 0 0 1 0 2 METTL22 chr16:8738414 3'AG 8738414 Downstream 97bp
chr16 8738510 8738510 1 + G T COAD 8738507 + 8738487 8738527 41 CTGGAGCAGCTCGCAGATGGCAAGCTGCGCTTCGTGGTGGA CTGGAGCAGCTCGCAGATGGCAATCTGCGCTTCGTGGTGGA < 41bp 0.700547882250392 0.296214693813578 0.31784138 0.2673406 prediction 0.401095764500784 Functional Loss - METTL22 ENSG00000067365 CDS Human protein_coding chr16:8738507 chr16:8738510 nonsynonymous SNV 0.077 0 24 hm5C_associated_SNPs_98608 0 0 1 0 2 METTL22 chr16:8738582 5'GT 8738582 Upstream 73bp
chr14 21467928 21467928 1 + T C rs2234633 21467927 + 21467907 21467947 41 ACCGGCTAGTCCTCAGACTCCTGGGCTGTATTTCTGCTGGT ACCGGCTAGTCCTCAGACTCCCGGGCTGTATTTCTGCTGGT < 41bp 0.803746067385459 0.603199146310129 0.64675176 0.64180005 prediction 0.401093842150661 Functional Loss - SLC39A2 ENSG00000165794 CDS Human protein_coding chr14:21467927 chr14:21467928 nonsynonymous SNV 0.990 3 22 hm5C_associated_SNPs_98611 0 0 0 0 1 SLC39A2 chr14:21467901 3'AG 21467901 Downstream 28bp
chr8 17126456 17126456 1 + C T UCEC 17126453 + 17126433 17126473 41 AGTTTTAGCTCCTACTTCAACAGCATTTCCTTAGTAAGTAT AGTTTTAGCTCCTACTTCAACAGTATTTCCTTAGTAAGTAT < 41bp 0.731152215529733 0.530608275242559 0.17858756 0.15817711 prediction 0.401087880574348 Functional Loss - VPS37A ENSG00000155975 CDS Human protein_coding chr8:17126453 chr8:17126456 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_98615 0 0 1 0 2 VPS37A chr8:17126365 3'AG 17126365 Downstream 92bp
chr8 17126456 17126456 1 + C T UCEC 17126453 + 17126433 17126473 41 AGTTTTAGCTCCTACTTCAACAGCATTTCCTTAGTAAGTAT AGTTTTAGCTCCTACTTCAACAGTATTTCCTTAGTAAGTAT < 41bp 0.731152215529733 0.530608275242559 0.17858756 0.15817711 prediction 0.401087880574348 Functional Loss - VPS37A ENSG00000155975 CDS Human protein_coding chr8:17126453 chr8:17126456 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_98615 0 0 1 0 2 VPS37A chr8:17126465 5'GT 17126465 Upstream 10bp
chr17 27061855 27061855 1 + C T COAD 27061852 + 27061832 27061872 41 TGCTGGAGGAGGAGACCATCCTGCACTTCTTCGTGCAGATC TGCTGGAGGAGGAGACCATCCTGTACTTCTTCGTGCAGATC < 41bp 0.792377689962272 0.59183468919305 0.18143943 0.09174678 prediction 0.401086001538444 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27061852 chr17:27061855 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_98617 0 0 1 0 1 NEK8 chr17:27061790 3'AG 27061790 Downstream 66bp
chr11 62381260 62381260 1 + C T UCEC 62381257 + 62381237 62381277 41 CTGCAACTGAGGTACCACTGCTGCGGGCGCCACGGGTACAA CTGCAACTGAGGTACCACTGCTGTGGGCGCCACGGGTACAA < 41bp 0.748161323881724 0.54762046909869 0.48277095 0.47704944 prediction 0.401081709566067 Functional Loss - ROM1 ENSG00000149489 CDS Human protein_coding chr11:62381257 chr11:62381260 synonymous SNV . 0 24 hm5C_associated_SNPs_98620 0 0 1 0 1 ROM1 chr11:62381343 5'GT 62381343 Upstream 84bp
chr19 39589732 39589732 1 + G A UCEC 39589729 + 39589709 39589749 41 TGACAACCCGAAGGCCGTCCCCCGGCTGCGCAGGGACACCC TGACAACCCGAAGGCCGTCCCCCAGCTGCGCAGGGACACCC < 41bp 0.700539503404321 0.44625643705534 0.085350096 0.09160617 prediction 0.401079006808642 Functional Loss - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39589729 chr19:39589732 nonsynonymous SNV 0.581 2 24 hm5C_associated_SNPs_98621 0 0 0 0 1 ACP7 chr19:39589782 5'GT 39589782 Upstream 51bp
chr2 220397073 220397073 1 + G A rs113299906 220397070 + 220397050 220397090 41 CCCAGCCCTGGGGCAACTGCCGCGCAGAGAGTGAGCTCAGG CCCAGCCCTGGGGCAACTGCCGCACAGAGAGTGAGCTCAGG < 41bp 0.700536026524404 0.457320385759002 0.3593602 0.22236338 prediction 0.401072053048809 Functional Loss - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220397070 chr2:220397073 nonsynonymous SNV 0.082 2 24 hm5C_associated_SNPs_98627 0 0 0 1 1 ASIC4 chr2:220397037 3'AG 220397037 Downstream 37bp
chr19 55222106 55222106 1 + G A rs6509898 55222103 + 55222083 55222123 41 AGTCCTGTGACCTCAGCCCACGCGGGGACCTACAGGTGCTA AGTCCTGTGACCTCAGCCCACGCAGGGACCTACAGGTGCTA < 41bp 0.796789333617381 0.596254134295796 0.56314933 0.3375339 prediction 0.401070398643169 Functional Loss - LILRP2 ENSG00000170858 ncRNA_exonic Human transcribed_processed_pseudogene chr19:55222103 chr19:55222106 . . 0 24 hm5C_associated_SNPs_98629 0 0 0 0 1 LILRP2 chr19:55222191 5'GT 55222191 Upstream 86bp
chr12 58019519 58019519 1 + C T PAAD 58019516 + 58019496 58019536 41 GGGAGCCAGGAGGCACTGGGCTGCGGCAAGTGAGGCAGGGG GGGAGCCAGGAGGCACTGGGCTGTGGCAAGTGAGGCAGGGG < 41bp 0.700532499518994 0.4951611698707 0.40137577 0.38392895 prediction 0.401064999037988 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58019516 chr12:58019519 synonymous SNV . 0 24 hm5C_associated_SNPs_98630 0 0 0 0 1 SLC26A10 chr12:58019535 5'GT 58019535 Upstream 17bp
chr13 36229846 36229846 1 + G A SKCM 36229843 + 36229823 36229863 41 GCCACCCTGCTGCTCTGGTACTGGAGTGGGCGGCACCATAT GCCACCCTGCTGCTCTGGTACTGAAGTGGGCGGCACCATAT < 41bp 0.700529460172132 0.499677142547478 0.90473694 0.7787329 prediction 0.401058920344265 Functional Loss - NBEA ENSG00000172915 CDS Human protein_coding chr13:36229843 chr13:36229846 stopgain 1.000 1 24 hm5C_associated_SNPs_98635 0 0 0 0 1 NBEA chr13:36229886 5'GT 36229886 Upstream 41bp
chr15 41222861 41222861 1 + A T LUAD 41222857 + 41222837 41222877 41 CATCATCGAAGCTTGGCACGCGCCAGGAGACGACCTGCGGC CATCATCGAAGCTTGGCACGCGCCTGGAGACGACCTGCGGC < 41bp 0.910368410111118 0.709843964112214 0.2749135 0.31382197 prediction 0.401048891997809 Functional Loss - DLL4 ENSG00000128917 CDS Human protein_coding chr15:41222857 chr15:41222861 synonymous SNV . 0 25 hm5C_associated_SNPs_98640 0 0 0 0 1 DLL4 chr15:41222880 5'GT 41222880 Upstream 20bp
chr12 121659784 121659784 1 + C T STAD 121659782 + 121659762 121659802 41 ACCAGACACAGGGCCTGTGCCCCGAGGTAGGAGGCCCCCGG ACCAGACACAGGGCCTGTGCCCTGAGGTAGGAGGCCCCCGG < 41bp 0.862861809620358 0.662337948187123 0.15433326 0.14987448 prediction 0.401047722866469 Functional Loss - P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121659782 chr12:121659784 synonymous SNV . 0 23 hm5C_associated_SNPs_98641 0 0 1 0 2 P2RX4 chr12:121659716 3'AG 121659716 Downstream 69bp
chr12 121659784 121659784 1 + C T STAD 121659782 + 121659762 121659802 41 ACCAGACACAGGGCCTGTGCCCCGAGGTAGGAGGCCCCCGG ACCAGACACAGGGCCTGTGCCCTGAGGTAGGAGGCCCCCGG < 41bp 0.862861809620358 0.662337948187123 0.15433326 0.14987448 prediction 0.401047722866469 Functional Loss - P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121659782 chr12:121659784 synonymous SNV . 0 23 hm5C_associated_SNPs_98641 0 0 1 0 2 P2RX4 chr12:121659787 5'GT 121659787 Upstream 4bp
chrX 65479985 65479985 1 + G A SKCM 65479982 + 65479962 65480002 41 AGATGTGGTGGATCTGTTCCCAGGGACTTTTGAGGTTGTGG AGATGTGGTGGATCTGTTCCCAGAGACTTTTGAGGTTGTGG < 41bp 0.700519619079205 0.457149348381534 0.9238237 0.91424954 prediction 0.401039238158409 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65479982 chrX:65479985 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_98645 0 0 0 0 1 HEPH chrX:65479942 3'AG 65479942 Downstream 44bp
chr5 40843796 40843796 1 + G A SKCM 40843793 + 40843773 40843813 41 GCCTTTCATTGGAGGAGGAACAGGAGAAAAGTATAGAAGGT GCCTTTCATTGGAGGAGGAACAGAAGAAAAGTATAGAAGGT < 41bp 0.79599207956154 0.595473998185233 0.89123774 0.63549376 prediction 0.401036162752614 Functional Loss - CARD6 ENSG00000132357 CDS Human protein_coding chr5:40843793 chr5:40843796 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_98646 0 0 0 0 1 CARD6 chr5:40843811 5'GT 40843811 Upstream 16bp
chr1 217842425 217842425 1 + G T THYM 217842422 + 217842402 217842442 41 CTCTACAATGCAATGGCTGTCAGGGTAAATATTTCTTCACT CTCTACAATGCAATGGCTGTCAGTGTAAATATTTCTTCACT < 41bp 0.700516093551651 0.331405464746921 0.9440197 0.19006526 prediction 0.401032187103303 Functional Loss - SPATA17 ENSG00000162814 CDS Human protein_coding chr1:217842422 chr1:217842425 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_98647 0 0 0 1 2 SPATA17 chr1:217842375 3'AG 217842375 Downstream 51bp
chr1 217842425 217842425 1 + G T THYM 217842422 + 217842402 217842442 41 CTCTACAATGCAATGGCTGTCAGGGTAAATATTTCTTCACT CTCTACAATGCAATGGCTGTCAGTGTAAATATTTCTTCACT < 41bp 0.700516093551651 0.331405464746921 0.9440197 0.19006526 prediction 0.401032187103303 Functional Loss - SPATA17 ENSG00000162814 CDS Human protein_coding chr1:217842422 chr1:217842425 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_98647 0 0 0 1 2 SPATA17 chr1:217842425 3'AG 217842425 Downstream 1bp
chr17 19283165 19283165 1 + G A LUSC 19283162 + 19283142 19283182 41 ACCAATGCCAAGCGGACCCTCAGGGAGCTGAAGATCCTCAA ACCAATGCCAAGCGGACCCTCAGAGAGCTGAAGATCCTCAA < 41bp 0.70050898086519 0.462633184066504 0.8884729 0.4798612 prediction 0.401017961730381 Functional Loss - MAPK7 ENSG00000166484 CDS Human protein_coding chr17:19283162 chr17:19283165 synonymous SNV . 0 24 hm5C_associated_SNPs_98649 0 0 1 0 2 MAPK7 chr17:19283095 3'AG 19283095 Downstream 71bp
chr17 19283165 19283165 1 + G A LUSC 19283162 + 19283142 19283182 41 ACCAATGCCAAGCGGACCCTCAGGGAGCTGAAGATCCTCAA ACCAATGCCAAGCGGACCCTCAGAGAGCTGAAGATCCTCAA < 41bp 0.70050898086519 0.462633184066504 0.8884729 0.4798612 prediction 0.401017961730381 Functional Loss - MAPK7 ENSG00000166484 CDS Human protein_coding chr17:19283162 chr17:19283165 synonymous SNV . 0 24 hm5C_associated_SNPs_98649 0 0 1 0 2 MAPK7 chr17:19283260 5'GT 19283260 Upstream 96bp
chr16 81927336 81927336 1 + C T COAD 81927333 + 81927313 81927353 41 GGTACCTTACAGGTGACCAGCTGCGGAGCGAGTCGTCCCCA GGTACCTTACAGGTGACCAGCTGTGGAGCGAGTCGTCCCCA < 41bp 0.744355925529765 0.543847501829447 0.3515187 0.28100932 prediction 0.401016847400636 Functional Loss - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81927333 chr16:81927336 nonsynonymous SNV 0.982 4 24 hm5C_associated_SNPs_98651 0 0 0 0 2 PLCG2 chr16:81927314 3'AG 81927314 Downstream 23bp
chr16 81927336 81927336 1 + C T COAD 81927333 + 81927313 81927353 41 GGTACCTTACAGGTGACCAGCTGCGGAGCGAGTCGTCCCCA GGTACCTTACAGGTGACCAGCTGTGGAGCGAGTCGTCCCCA < 41bp 0.744355925529765 0.543847501829447 0.3515187 0.28100932 prediction 0.401016847400636 Functional Loss - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81927333 chr16:81927336 nonsynonymous SNV 0.982 4 24 hm5C_associated_SNPs_98651 0 0 0 0 2 PLCG2 chr16:81927399 5'GT 81927399 Upstream 64bp
chr16 8722640 8722640 1 + G T COAD 8722638 + 8722618 8722658 41 CCAAGACTCTTGGACAGATTCAGGAGCCAAGGGTGGCAGTC CCAAGACTCTTGGACAGATTCATGAGCCAAGGGTGGCAGTC < 41bp 0.922335262328306 0.721827153661694 0.93190086 0.21288055 prediction 0.401016217333223 Functional Loss - METTL22 ENSG00000067365 CDS Human protein_coding chr16:8722638 chr16:8722640 stopgain 0.380 0 23 hm5C_associated_SNPs_98652 0 0 1 0 1 METTL22 chr16:8722587 3'AG 8722587 Downstream 54bp
chr12 14633975 14633975 1 + C T BLCA 14633973 + 14633953 14633993 41 TGTAACACATCGTCCAGTAACTCAGGTGACCACAAGACTCC TGTAACACATCGTCCAGTAACTTAGGTGACCACAAGACTCC < 41bp 0.700505831152217 0.406889625067506 0.042459965 0.063367605 prediction 0.401011662304434 Functional Loss - ATF7IP ENSG00000171681 CDS Human protein_coding chr12:14633973 chr12:14633975 stopgain 1.000 1 23 hm5C_associated_SNPs_98654 0 0 1 0 1 ATF7IP chr12:14633937 3'AG 14633937 Downstream 39bp
chr15 75185033 75185033 1 + C T HNSC 75185030 + 75185010 75185050 41 AGAGAAGCTGCACCTCCAGGCTCCGCAGCACTACCCCGATG AGAGAAGCTGCACCTCCAGGCTCTGCAGCACTACCCCGATG < 41bp 0.78207042417146 0.581565243335514 0.06354344 0.056744546 prediction 0.401010361671893 Functional Loss - MPI ENSG00000178802 CDS Human protein_coding chr15:75185030 chr15:75185033 nonsynonymous SNV 0.987 5 24 hm5C_associated_SNPs_98655 0 0 0 0 1 MPI chr15:75185002 3'AG 75185002 Downstream 32bp
chr10 5255048 5255048 1 + C T BLCA 5255045 + 5255025 5255065 41 AAACCCCAGCCCTGATTGCCCTGCGCTACCAGCTGCAGCGT AAACCCCAGCCCTGATTGCCCTGTGCTACCAGCTGCAGCGT < 41bp 0.775421088540989 0.574916918748845 0.10806355 0.070562184 prediction 0.401008339584289 Functional Loss - AKR1C4 ENSG00000198610 CDS Human protein_coding chr10:5255045 chr10:5255048 nonsynonymous SNV 0.693 3 24 hm5C_associated_SNPs_98656 0 0 0 0 1 AKR1C4 chr10:5255122 5'GT 5255122 Upstream 75bp
chr12 51639878 51639878 1 + G A rs182062015 51639875 + 51639855 51639895 41 ATCAAGATCACGACCGAGAGCAGGGTGAGGAAGACAACGGT ATCAAGATCACGACCGAGAGCAGAGTGAGGAAGACAACGGT < 41bp 0.802391580906165 0.601889903379756 0.87616646 0.53381324 prediction 0.401003355052817 Functional Loss - DAZAP2;SMAGP ENSG00000170545;ENSG00000183283 CDS Human other chr12:51639875 chr12:51639878 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_98658 0 0 1 0 1 DAZAP2;SMAGP chr12:51639845 3'AG 51639845 Downstream 34bp
chr1 158063171 158063171 1 + C T STAD 158063169 + 158063149 158063189 41 ATAGCTGGGGCCACCATCGGCGCGAGCATCCTGCTCATCTT ATAGCTGGGGCCACCATCGGCGTGAGCATCCTGCTCATCTT < 41bp 0.86873229020856 0.668230883258919 0.33597142 0.28047892 prediction 0.401002813899284 Functional Loss - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063169 chr1:158063171 nonsynonymous SNV 0.462 3 23 hm5C_associated_SNPs_98659 0 0 0 0 2 KIRREL chr1:158063129 3'AG 158063129 Downstream 43bp
chr1 158063171 158063171 1 + C T STAD 158063169 + 158063149 158063189 41 ATAGCTGGGGCCACCATCGGCGCGAGCATCCTGCTCATCTT ATAGCTGGGGCCACCATCGGCGTGAGCATCCTGCTCATCTT < 41bp 0.86873229020856 0.668230883258919 0.33597142 0.28047892 prediction 0.401002813899284 Functional Loss - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063169 chr1:158063171 nonsynonymous SNV 0.462 3 23 hm5C_associated_SNPs_98659 0 0 0 0 2 KIRREL chr1:158063236 5'GT 158063236 Upstream 66bp
chr8 2091344 2091344 1 + C T rs2280909 2091341 + 2091321 2091361 41 GCAGATCGTGGCAGGTTGATCGGCGGCTTGCCTGACGTGGT GCAGATCGTGGCAGGTTGATCGGTGGCTTGCCTGACGTGGT < 41bp 0.745106038824742 0.544605064907329 0.9030906 0.8222055 prediction 0.401001947834825 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2091341 chr8:2091344 synonymous SNV . 0 24 hm5C_associated_SNPs_98660 0 0 0 0 2 MYOM2 chr8:2091325 3'AG 2091325 Downstream 20bp
chr8 2091344 2091344 1 + C T rs2280909 2091341 + 2091321 2091361 41 GCAGATCGTGGCAGGTTGATCGGCGGCTTGCCTGACGTGGT GCAGATCGTGGCAGGTTGATCGGTGGCTTGCCTGACGTGGT < 41bp 0.745106038824742 0.544605064907329 0.9030906 0.8222055 prediction 0.401001947834825 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2091341 chr8:2091344 synonymous SNV . 0 24 hm5C_associated_SNPs_98660 0 0 0 0 2 MYOM2 chr8:2091380 5'GT 2091380 Upstream 37bp
chr19 45540718 45540718 1 + C T COAD 45540715 + 45540695 45540735 41 GACCCTGACTTCTTCTCTGGCACCGTGTCCCTGCCCGGCCT GACCCTGACTTCTTCTCTGGCACTGTGTCCCTGCCCGGCCT < 41bp 0.711082889859662 0.510584721248335 0.067480326 0.034098357 prediction 0.400996337222654 Functional Loss - RELB ENSG00000104856 CDS Human protein_coding chr19:45540715 chr19:45540718 synonymous SNV . 0 24 hm5C_associated_SNPs_98663 0 0 0 0 1 RELB chr19:45540663 3'AG 45540663 Downstream 56bp
chr19 11144181 11144181 1 + G T UCEC 11144178 + 11144158 11144198 41 CTGCAGGCCATCCTGGAGCACGAGGAGCAGGATGAGGTGAG CTGCAGGCCATCCTGGAGCACGATGAGCAGGATGAGGTGAG < 41bp 0.700495409816141 0.328538657926122 0.89685166 0.33368874 prediction 0.400990819632281 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11144178 chr19:11144181 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_98666 0 0 1 0 1 SMARCA4 chr19:11144193 5'GT 11144193 Upstream 13bp
chr2 66665001 66665001 1 + C T BLCA 66664998 + 66664978 66665018 41 ACGGGCCTCCTCTGCACTCGCATCAGTACCCGCACACAGCT ACGGGCCTCCTCTGCACTCGCATTAGTACCCGCACACAGCT < 41bp 0.700494123484095 0.491290831878277 0.09080121 0.108570814 prediction 0.40098824696819 Functional Loss - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66664998 chr2:66665001 stopgain 1.000 1 24 hm5C_associated_SNPs_98667 0 0 1 0 1 MEIS1 chr2:66665095 5'GT 66665095 Upstream 95bp
chr10 94835625 94835625 1 + G A COAD 94835622 + 94835602 94835642 41 CCGAACTCCTCTTTGGAGGACACGAAACCACGGCCAGTGCA CCGAACTCCTCTTTGGAGGACACAAAACCACGGCCAGTGCA < 41bp 0.700493327128877 0.455593909696948 0.0797621 0.029133469 prediction 0.400986654257754 Functional Loss - CYP26A1 ENSG00000095596 CDS Human protein_coding chr10:94835622 chr10:94835625 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_98668 0 0 0 0 2 CYP26A1 chr10:94835583 3'AG 94835583 Downstream 43bp
chr10 94835625 94835625 1 + G A COAD 94835622 + 94835602 94835642 41 CCGAACTCCTCTTTGGAGGACACGAAACCACGGCCAGTGCA CCGAACTCCTCTTTGGAGGACACAAAACCACGGCCAGTGCA < 41bp 0.700493327128877 0.455593909696948 0.0797621 0.029133469 prediction 0.400986654257754 Functional Loss - CYP26A1 ENSG00000095596 CDS Human protein_coding chr10:94835622 chr10:94835625 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_98668 0 0 0 0 2 CYP26A1 chr10:94835717 5'GT 94835717 Upstream 93bp
chr16 56691995 56691995 1 + G T rs76144808 56691991 + 56691971 56692011 41 ATGGACCCCAACTGCTCCTGCGCCGCTGGTAAGGAACGCCG ATGGACCCCAACTGCTCCTGCGCCTCTGGTAAGGAACGCCG < 41bp 0.751290721153429 0.550800648869313 0.17829257 0.26212484 prediction 0.400980144568233 Functional Loss - MT1F ENSG00000198417 CDS Human protein_coding chr16:56691991 chr16:56691995 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_98670 0 0 1 0 1 MT1F chr16:56691998 5'GT 56691998 Upstream 4bp
chr9 101589096 101589096 1 + G A ACC 101589093 + 101589073 101589113 41 TGCCCAAGGTGCGCCTGATCCGCGCCAACAAGAGAGAGGGC TGCCCAAGGTGCGCCTGATCCGCACCAACAAGAGAGAGGGC < 41bp 0.832969815291388 0.632480903341086 0.5958634 0.14844152 prediction 0.400977823900604 Functional Loss - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101589093 chr9:101589096 nonsynonymous SNV 0.149 3 24 hm5C_associated_SNPs_98673 0 0 1 0 1 GALNT12 chr9:101589034 3'AG 101589034 Downstream 63bp
chr12 57175984 57175984 1 + G T UCEC 57175981 + 57175961 57176001 41 GTAGGAGGCTACTGTGTCTCCAAGTATGGAGTGGAAGCCTT GTAGGAGGCTACTGTGTCTCCAATTATGGAGTGGAAGCCTT < 41bp 0.700486994297721 0.305375042891873 0.12942263 0.048505723 prediction 0.400973988595442 Functional Loss - HSD17B6 ENSG00000025423 CDS Human protein_coding chr12:57175981 chr12:57175984 nonsynonymous SNV 0.890 5 24 hm5C_associated_SNPs_98674 0 0 0 0 1 HSD17B6 chr12:57176016 5'GT 57176016 Upstream 33bp
chrX 100646534 100646534 1 + G T UCEC 100646530 + 100646510 100646550 41 GTGACACAGTACAAGAAGGGCAAGGATTCTCTGTACGCCCA GTGACACAGTACAAGAAGGGCAAGTATTCTCTGTACGCCCA < 41bp 0.707913073560459 0.507427339083569 0.52047914 0.17733681 prediction 0.400971468953779 Functional Loss - RPL36A;RPL36A-HNRNPH2 ENSG00000241343;ENSG00000257529 CDS Human other chrX:100646530 chrX:100646534 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_98675 0 0 1 0 1 RPL36A;RPL36A-HNRNPH2 chrX:100646447 3'AG 100646447 Downstream 88bp
chr6 6625170 6625170 1 + G A SKCM 6625167 + 6625147 6625187 41 TCTTCTTCGTAGATCCATTACAAGATTTTGGCTTTTCTGTT TCTTCTTCGTAGATCCATTACAAAATTTTGGCTTTTCTGTT < 41bp 0.700485463336459 0.462313842708873 0.5096017 0.31958243 prediction 0.400970926672918 Functional Loss - LY86 ENSG00000112799 CDS Human protein_coding chr6:6625167 chr6:6625170 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_98676 0 0 0 0 2 LY86 chr6:6625159 3'AG 6625159 Downstream 12bp
chr6 6625170 6625170 1 + G A SKCM 6625167 + 6625147 6625187 41 TCTTCTTCGTAGATCCATTACAAGATTTTGGCTTTTCTGTT TCTTCTTCGTAGATCCATTACAAAATTTTGGCTTTTCTGTT < 41bp 0.700485463336459 0.462313842708873 0.5096017 0.31958243 prediction 0.400970926672918 Functional Loss - LY86 ENSG00000112799 CDS Human protein_coding chr6:6625167 chr6:6625170 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_98676 0 0 0 0 2 LY86 chr6:6625245 5'GT 6625245 Upstream 76bp
chr6 36929317 36929317 1 + G A UCEC 36929314 + 36929294 36929334 41 AGGAGACCAACATCGAATTACTGGTGTGCAACTATGAGCCT AGGAGACCAACATCGAATTACTGATGTGCAACTATGAGCCT < 41bp 0.700477945175991 0.449412472262389 0.1317989 0.067465246 prediction 0.400955890351982 Functional Loss - PI16 ENSG00000164530 CDS Human protein_coding chr6:36929314 chr6:36929317 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_98681 0 0 0 0 1 PI16 chr6:36929336 5'GT 36929336 Upstream 20bp
chr19 55493627 55493627 1 + G T LUAD 55493623 + 55493603 55493643 41 CAAAGAGGTCCAGGTTATGGCTGAGAGATACAAGATGCTGA CAAAGAGGTCCAGGTTATGGCTGATAGATACAAGATGCTGA < 41bp 0.700477319682896 0.493285612941964 0.12155676 0.05318767 prediction 0.400954639365791 Functional Loss - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55493623 chr19:55493627 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_98683 0 0 1 0 1 NLRP2 chr19:55493530 3'AG 55493530 Downstream 98bp
chr2 233990624 233990624 1 + C T SKCM 233990621 + 233990601 233990641 41 CAGCGACTGCAAAGCATGGACACCAGTGGGTGAGTCCCCAC CAGCGACTGCAAAGCATGGACACTAGTGGGTGAGTCCCCAC < 41bp 0.776982728839798 0.576505694877216 0.2990023 0.32149953 prediction 0.400954067925162 Functional Loss - INPP5D ENSG00000168918 CDS Human protein_coding chr2:233990621 chr2:233990624 synonymous SNV . 0 24 hm5C_associated_SNPs_98684 0 0 0 0 1 INPP5D chr2:233990629 5'GT 233990629 Upstream 6bp
chr9 98856636 98856636 1 + C T rs142355691 98856634 + 98856614 98856654 41 AACCTGTGGCTTTGGATTTTCTCGAGGCCCCAGAGCGTCAG AACCTGTGGCTTTGGATTTTCTTGAGGCCCCAGAGCGTCAG < 41bp 0.83331949920521 0.632842505974089 0.8342341 0.25971466 prediction 0.400953986462243 Functional Loss - LOC158435 ENSG00000237212 upstream Human lincRNA chr9:98856634 chr9:98856636 . . 0 23 hm5C_associated_SNPs_98685 0 0 0 0 2 LOC158435 chr9:98856582 3'AG 98856582 Downstream 55bp
chr9 98856636 98856636 1 + C T rs142355691 98856634 + 98856614 98856654 41 AACCTGTGGCTTTGGATTTTCTCGAGGCCCCAGAGCGTCAG AACCTGTGGCTTTGGATTTTCTTGAGGCCCCAGAGCGTCAG < 41bp 0.83331949920521 0.632842505974089 0.8342341 0.25971466 prediction 0.400953986462243 Functional Loss - LOC158435 ENSG00000237212 upstream Human lincRNA chr9:98856634 chr9:98856636 . . 0 23 hm5C_associated_SNPs_98685 0 0 0 0 2 LOC158435 chr9:98856654 5'GT 98856654 Upstream 19bp
chr12 34175705 34175705 1 + G T LUAD 34175701 + 34175681 34175721 41 TGAGGGCCATTTCTCCCTTTCCCAGGTGGGGTCCCCAACCT TGAGGGCCATTTCTCCCTTTCCCATGTGGGGTCCCCAACCT < 41bp 0.728301345902071 0.527825296146425 0.3950526 0.17940566 prediction 0.400952099511294 Functional Loss - ALG10 ENSG00000139133 CDS Human protein_coding chr12:34175701 chr12:34175705 nonsynonymous SNV 0.888 1 25 hm5C_associated_SNPs_98687 0 0 1 0 1 ALG10 chr12:34175705 5'GT 34175705 Upstream 1bp
chr11 66272197 66272197 1 + C T HNSC 66272194 + 66272174 66272214 41 CCCTCAGGGACACGGTGCTGCTGCGTAAGGAATCTCGGAAG CCCTCAGGGACACGGTGCTGCTGTGTAAGGAATCTCGGAAG < 41bp 0.700474771342981 0.482413961303481 0.20313177 0.11352259 prediction 0.400949542685962 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66272194 chr11:66272197 nonsynonymous SNV 0.986 4 24 hm5C_associated_SNPs_98689 0 0 1 0 1 DPP3 chr11:66272245 5'GT 66272245 Upstream 49bp
chr1 16096992 16096992 1 + G A UCEC 16096989 + 16096969 16097009 41 CAGTACCATGCCCAGTGCTTCACGTGCCGCACCTGCCGCCG CAGTACCATGCCCAGTGCTTCACATGCCGCACCTGCCGCCG < 41bp 0.700474176297369 0.443411397019607 0.3180701 0.074041754 prediction 0.400948352594737 Functional Loss - FBLIM1 ENSG00000162458 CDS Human protein_coding chr1:16096989 chr1:16096992 synonymous SNV . 0 24 hm5C_associated_SNPs_98690 0 0 1 0 2 FBLIM1 chr1:16096904 3'AG 16096904 Downstream 89bp
chr1 16096992 16096992 1 + G A UCEC 16096989 + 16096969 16097009 41 CAGTACCATGCCCAGTGCTTCACGTGCCGCACCTGCCGCCG CAGTACCATGCCCAGTGCTTCACATGCCGCACCTGCCGCCG < 41bp 0.700474176297369 0.443411397019607 0.3180701 0.074041754 prediction 0.400948352594737 Functional Loss - FBLIM1 ENSG00000162458 CDS Human protein_coding chr1:16096989 chr1:16096992 synonymous SNV . 0 24 hm5C_associated_SNPs_98690 0 0 1 0 2 FBLIM1 chr1:16097073 5'GT 16097073 Upstream 82bp
chr11 64940166 64940166 1 + G T UCEC 64940162 + 64940142 64940182 41 CTGCTCCTCCCAGGTCATGGCAAAGGAGCCATTCCACTGGG CTGCTCCTCCCAGGTCATGGCAAATGAGCCATTCCACTGGG < 41bp 0.735716128663451 0.535244152274603 0.41630787 0.451023 prediction 0.400943952777696 Functional Loss - SPDYC ENSG00000204710 CDS Human protein_coding chr11:64940162 chr11:64940166 nonsynonymous SNV 0.833 1 25 hm5C_associated_SNPs_98694 0 0 1 0 1 SPDYC chr11:64940155 3'AG 64940155 Downstream 12bp
chr15 41105975 41105975 1 + G A STAD 41105972 + 41105952 41105992 41 CATCCCTGCAGAGCAGGCTTCTCGACCCTGGACGCAACCCC CATCCCTGCAGAGCAGGCTTCTCAACCCTGGACGCAACCCC < 41bp 0.830963146371715 0.630492599793709 0.46839112 0.19979593 prediction 0.400941093156012 Functional Loss - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105972 chr15:41105975 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_98696 0 0 1 0 2 ZFYVE19 chr15:41105911 3'AG 41105911 Downstream 65bp
chr15 41105975 41105975 1 + G A STAD 41105972 + 41105952 41105992 41 CATCCCTGCAGAGCAGGCTTCTCGACCCTGGACGCAACCCC CATCCCTGCAGAGCAGGCTTCTCAACCCTGGACGCAACCCC < 41bp 0.830963146371715 0.630492599793709 0.46839112 0.19979593 prediction 0.400941093156012 Functional Loss - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105972 chr15:41105975 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_98696 0 0 1 0 2 ZFYVE19 chr15:41106009 5'GT 41106009 Upstream 35bp
chrX 135574131 135574131 1 + G A LUAD 135574128 + 135574108 135574148 41 CTTCCCCCTATAGATTGAATCCCGAAAGAGAATTGCCAGAA CTTCCCCCTATAGATTGAATCCCAAAAGAGAATTGCCAGAA < 41bp 0.700469463785659 0.471065123508332 0.09421188 0.057239473 prediction 0.400938927571318 Functional Loss - BRS3 ENSG00000102239 CDS Human protein_coding chrX:135574128 chrX:135574131 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_98697 0 0 0 0 1 BRS3 chrX:135574121 3'AG 135574121 Downstream 11bp
chr22 38074571 38074571 1 + C T COAD 38074568 + 38074548 38074588 41 TTCAACGCCCACGGCGACGCCAACACCATCGTGTGCAACAG TTCAACGCCCACGGCGACGCCAATACCATCGTGTGCAACAG < 41bp 0.784471153738643 0.584002142368355 0.09484011 0.08128601 prediction 0.400938022740575 Functional Loss - LGALS1 ENSG00000100097 CDS Human protein_coding chr22:38074568 chr22:38074571 synonymous SNV . 0 24 hm5C_associated_SNPs_98699 0 0 1 0 2 LGALS1 chr22:38074490 3'AG 38074490 Downstream 82bp
chr22 38074571 38074571 1 + C T COAD 38074568 + 38074548 38074588 41 TTCAACGCCCACGGCGACGCCAACACCATCGTGTGCAACAG TTCAACGCCCACGGCGACGCCAATACCATCGTGTGCAACAG < 41bp 0.784471153738643 0.584002142368355 0.09484011 0.08128601 prediction 0.400938022740575 Functional Loss - LGALS1 ENSG00000100097 CDS Human protein_coding chr22:38074568 chr22:38074571 synonymous SNV . 0 24 hm5C_associated_SNPs_98699 0 0 1 0 2 LGALS1 chr22:38074661 5'GT 38074661 Upstream 91bp
chr4 26417170 26417170 1 + G A UCEC 26417167 + 26417147 26417187 41 AAAAAAAAGAACAAATGGAACGCGATGGTTGTTCTGAACAA AAAAAAAAGAACAAATGGAACGCAATGGTTGTTCTGAACAA < 41bp 0.786748523675335 0.586285294578452 0.4245299 0.13855067 prediction 0.400926458193767 Functional Loss - RBPJ ENSG00000168214 CDS Human protein_coding chr4:26417167 chr4:26417170 nonsynonymous SNV 0.978 2 24 hm5C_associated_SNPs_98702 0 0 1 0 2 RBPJ chr4:26417097 3'AG 26417097 Downstream 74bp
chr4 26417170 26417170 1 + G A UCEC 26417167 + 26417147 26417187 41 AAAAAAAAGAACAAATGGAACGCGATGGTTGTTCTGAACAA AAAAAAAAGAACAAATGGAACGCAATGGTTGTTCTGAACAA < 41bp 0.786748523675335 0.586285294578452 0.4245299 0.13855067 prediction 0.400926458193767 Functional Loss - RBPJ ENSG00000168214 CDS Human protein_coding chr4:26417167 chr4:26417170 nonsynonymous SNV 0.978 2 24 hm5C_associated_SNPs_98702 0 0 1 0 2 RBPJ chr4:26417262 5'GT 26417262 Upstream 93bp
chr11 65649778 65649778 1 + C T COAD 65649776 + 65649756 65649796 41 GACTGGCGGAAGGTGGCCAGCGCCATCTCACCCATCAAGGA GACTGGCGGAAGGTGGCCAGCGTCATCTCACCCATCAAGGA < 41bp 0.857007463381542 0.656548842855222 0.15081733 0.21035907 prediction 0.400917241052639 Functional Loss - CTSW ENSG00000172543 CDS Human protein_coding chr11:65649776 chr11:65649778 nonsynonymous SNV 0.124 0 23 hm5C_associated_SNPs_98707 0 0 0 0 1 CTSW chr11:65649800 5'GT 65649800 Upstream 23bp
chr4 156618189 156618189 1 + A C rs61736997 156618185 + 156618165 156618205 41 ACATTCCTGAGAAGAACATACAAGAAAGTCTTCCTCAAAGA ACATTCCTGAGAAGAACATACAAGCAAGTCTTCCTCAAAGA < 41bp 0.700450812403987 0.294316326647425 0.19821906 0.13433558 prediction 0.400901624807974 Functional Loss - GUCY1A3 ENSG00000164116 CDS Human protein_coding chr4:156618185 chr4:156618189 nonsynonymous SNV 0.664 1 25 hm5C_associated_SNPs_98714 0 0 0 0 1 GUCY1A3 chr4:156618274 5'GT 156618274 Upstream 86bp
chr12 67703753 67703753 1 + C T LUSC 67703750 + 67703730 67703770 41 AGCCTTGGTCACATTTAATTCAGCAGCACATAACAAGCCAT AGCCTTGGTCACATTTAATTCAGTAGCACATAACAAGCCAT < 41bp 0.70045049072888 0.47858798910543 0.50667703 0.41246626 prediction 0.40090098145776 Functional Loss - CAND1 ENSG00000111530 CDS Human protein_coding chr12:67703750 chr12:67703753 nonsynonymous SNV 0.985 4 24 hm5C_associated_SNPs_98715 0 0 1 0 2 CAND1 chr12:67703681 3'AG 67703681 Downstream 73bp
chr12 67703753 67703753 1 + C T LUSC 67703750 + 67703730 67703770 41 AGCCTTGGTCACATTTAATTCAGCAGCACATAACAAGCCAT AGCCTTGGTCACATTTAATTCAGTAGCACATAACAAGCCAT < 41bp 0.70045049072888 0.47858798910543 0.50667703 0.41246626 prediction 0.40090098145776 Functional Loss - CAND1 ENSG00000111530 CDS Human protein_coding chr12:67703750 chr12:67703753 nonsynonymous SNV 0.985 4 24 hm5C_associated_SNPs_98715 0 0 1 0 2 CAND1 chr12:67703850 5'GT 67703850 Upstream 98bp
chr5 170216170 170216170 1 + G C LUSC 170216169 + 170216149 170216189 41 AGTCAGTTCAACGTCGAGGTCGGCAGAAGTGACAAGCTTTC AGTCAGTTCAACGTCGAGGTCCGCAGAAGTGACAAGCTTTC < 41bp 0.899377978541593 0.698927658671483 0.4905114 0.18784446 prediction 0.400900639740219 Functional Loss - GABRP ENSG00000094755 CDS Human protein_coding chr5:170216169 chr5:170216170 nonsynonymous SNV 0.013 0 22 hm5C_associated_SNPs_98716 0 0 0 0 2 GABRP chr5:170216133 3'AG 170216133 Downstream 38bp
chr5 170216170 170216170 1 + G C LUSC 170216169 + 170216149 170216189 41 AGTCAGTTCAACGTCGAGGTCGGCAGAAGTGACAAGCTTTC AGTCAGTTCAACGTCGAGGTCCGCAGAAGTGACAAGCTTTC < 41bp 0.899377978541593 0.698927658671483 0.4905114 0.18784446 prediction 0.400900639740219 Functional Loss - GABRP ENSG00000094755 CDS Human protein_coding chr5:170216169 chr5:170216170 nonsynonymous SNV 0.013 0 22 hm5C_associated_SNPs_98716 0 0 0 0 2 GABRP chr5:170216251 5'GT 170216251 Upstream 82bp
chr2 242140720 242140720 1 + G A rs144166359 242140717 + 242140697 242140737 41 GTTCACATGCCCACAGCTTCCTCGGGAGTGACAACCAGGAC GTTCACATGCCCACAGCTTCCTCAGGAGTGACAACCAGGAC < 41bp 0.807340452320765 0.606892250722435 0.0065580606 0.0027034879 prediction 0.40089640319666 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242140717 chr2:242140720 nonsynonymous SNV 0.340 1 24 hm5C_associated_SNPs_98717 0 0 0 0 2 ANO7 chr2:242140713 3'AG 242140713 Downstream 8bp
chr2 242140720 242140720 1 + G A rs144166359 242140717 + 242140697 242140737 41 GTTCACATGCCCACAGCTTCCTCGGGAGTGACAACCAGGAC GTTCACATGCCCACAGCTTCCTCAGGAGTGACAACCAGGAC < 41bp 0.807340452320765 0.606892250722435 0.0065580606 0.0027034879 prediction 0.40089640319666 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242140717 chr2:242140720 nonsynonymous SNV 0.340 1 24 hm5C_associated_SNPs_98717 0 0 0 0 2 ANO7 chr2:242140770 5'GT 242140770 Upstream 51bp
chr16 56704434 56704434 1 + C T CESC 56704431 + 56704411 56704451 41 CTTGCAGGTGGCTCCTGCGCCTGCGCCGGCTCCTGCAAGTG CTTGCAGGTGGCTCCTGCGCCTGTGCCGGCTCCTGCAAGTG < 41bp 0.759153922907617 0.558706532250828 0.11242229 0.15673107 prediction 0.400894781313578 Functional Loss - MT1H ENSG00000205358 CDS Human protein_coding chr16:56704431 chr16:56704434 synonymous SNV . 0 24 hm5C_associated_SNPs_98720 0 0 0 0 1 MT1H chr16:56704418 3'AG 56704418 Downstream 17bp
chr1 34667833 34667833 1 + G A UCEC 34667830 + 34667810 34667850 41 TATCCACCTCCACCAGTGTTCACGAATCACTCTACCTTCTT TATCCACCTCCACCAGTGTTCACAAATCACTCTACCTTCTT < 41bp 0.820697768919913 0.620250683775113 0.019569695 0.013350487 prediction 0.400894170289601 Functional Loss - C1orf94 ENSG00000142698 CDS Human protein_coding chr1:34667830 chr1:34667833 synonymous SNV . 0 24 hm5C_associated_SNPs_98721 0 0 0 0 1 C1orf94 chr1:34667860 5'GT 34667860 Upstream 28bp
chr19 48258075 48258075 1 + C T rs201876600 48258073 + 48258053 48258093 41 GGGGATGCCGAGGTCTGTCCCACGCCCGCCCGCCTGGCCAC GGGGATGCCGAGGTCTGTCCCATGCCCGCCCGCCTGGCCAC < 41bp 0.827855714588264 0.62740920445825 0.32344785 0.35145396 prediction 0.400893020260028 Functional Loss - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48258073 chr19:48258075 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_98722 0 0 1 0 1 NOP53 chr19:48258148 5'GT 48258148 Upstream 74bp
chr19 55889202 55889202 1 + G A GBM 55889199 + 55889179 55889219 41 GGAGGAAGCACATGTGGGCGCTGGTCTGGACGTGCAGCGGC GGAGGAAGCACATGTGGGCGCTGATCTGGACGTGCAGCGGC < 41bp 0.840118247036008 0.639674525419851 0.38175505 0.35376173 prediction 0.400887443232313 Functional Loss - TMEM190 ENSG00000160472 CDS Human protein_coding chr19:55889199 chr19:55889202 nonsynonymous SNV 0.078 0 24 hm5C_associated_SNPs_98727 0 0 0 0 1 TMEM190 chr19:55889170 3'AG 55889170 Downstream 33bp
chr15 57809077 57809077 1 + C T rs562562448 57809074 + 57809054 57809094 41 TGCAGGAGGAGAATGAGAAGCTGCAGGGAAGAAGCGAAGAG TGCAGGAGGAGAATGAGAAGCTGTAGGGAAGAAGCGAAGAG < 41bp 0.700439225380788 0.46255069817764 0.5260025 0.33878052 prediction 0.400878450761575 Functional Loss - CGNL1 ENSG00000128849 CDS Human protein_coding chr15:57809074 chr15:57809077 stopgain 0.899 0 24 hm5C_associated_SNPs_98730 0 0 1 0 1 CGNL1 chr15:57808978 3'AG 57808978 Downstream 100bp
chr12 122439487 122439487 1 + C T COAD 122439484 + 122439464 122439504 41 CGAGGGATGGAAATCCGAGCCTGCAACCTGCTCCGTCAAAG CGAGGGATGGAAATCCGAGCCTGTAACCTGCTCCGTCAAAG < 41bp 0.70043916719836 0.471608151357669 0.12433705 0.10250464 prediction 0.40087833439672 Functional Loss - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122439484 chr12:122439487 nonsynonymous SNV 0.823 0 24 hm5C_associated_SNPs_98732 0 0 0 0 2 WDR66 chr12:122439403 3'AG 122439403 Downstream 85bp
chr12 122439487 122439487 1 + C T COAD 122439484 + 122439464 122439504 41 CGAGGGATGGAAATCCGAGCCTGCAACCTGCTCCGTCAAAG CGAGGGATGGAAATCCGAGCCTGTAACCTGCTCCGTCAAAG < 41bp 0.70043916719836 0.471608151357669 0.12433705 0.10250464 prediction 0.40087833439672 Functional Loss - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122439484 chr12:122439487 nonsynonymous SNV 0.823 0 24 hm5C_associated_SNPs_98732 0 0 0 0 2 WDR66 chr12:122439504 5'GT 122439504 Upstream 18bp
chr9 96407921 96407921 1 + G C LUSC 96407920 + 96407900 96407940 41 CTTCCCTGCAGTGCTGAAGACGTGGTGGCCCGTGTGCCAGG CTTCCCTGCAGTGCTGAAGACCTGGTGGCCCGTGTGCCAGG < 41bp 0.700437602341228 0.367854004194956 0.5061787 0.14062849 prediction 0.400875204682456 Functional Loss - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96407920 chr9:96407921 nonsynonymous SNV 0.991 1 22 hm5C_associated_SNPs_98733 0 0 1 0 1 PHF2 chr9:96407911 3'AG 96407911 Downstream 11bp
chr10 93220228 93220228 1 + C T GBM 93220225 + 93220205 93220245 41 GCCTTGATGTTAGACAAAAACAGCGTACATCTATGGATGCA GCCTTGATGTTAGACAAAAACAGTGTACATCTATGGATGCA < 41bp 0.7701462055082 0.569708924710988 0.12768042 0.3289582 prediction 0.400874561594425 Functional Loss - HECTD2 ENSG00000165338 CDS Human protein_coding chr10:93220225 chr10:93220228 nonsynonymous SNV 0.861 2 24 hm5C_associated_SNPs_98734 0 0 0 0 2 HECTD2 chr10:93220184 3'AG 93220184 Downstream 45bp
chr10 93220228 93220228 1 + C T GBM 93220225 + 93220205 93220245 41 GCCTTGATGTTAGACAAAAACAGCGTACATCTATGGATGCA GCCTTGATGTTAGACAAAAACAGTGTACATCTATGGATGCA < 41bp 0.7701462055082 0.569708924710988 0.12768042 0.3289582 prediction 0.400874561594425 Functional Loss - HECTD2 ENSG00000165338 CDS Human protein_coding chr10:93220225 chr10:93220228 nonsynonymous SNV 0.861 2 24 hm5C_associated_SNPs_98734 0 0 0 0 2 HECTD2 chr10:93220322 5'GT 93220322 Upstream 95bp
chr10 45486472 45486472 1 + G A SKCM 45486469 + 45486449 45486489 41 GGGCCATGTGAGAAGATCGCCAGGATCTTCCTGATGGAAGC GGGCCATGTGAGAAGATCGCCAGAATCTTCCTGATGGAAGC < 41bp 0.814134027978212 0.613701635438058 0.7670604 0.7640116 prediction 0.400864785080306 Functional Loss - RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45486469 chr10:45486472 synonymous SNV . 0 24 hm5C_associated_SNPs_98746 0 0 1 0 2 RASSF4 chr10:45486396 3'AG 45486396 Downstream 77bp
chr10 45486472 45486472 1 + G A SKCM 45486469 + 45486449 45486489 41 GGGCCATGTGAGAAGATCGCCAGGATCTTCCTGATGGAAGC GGGCCATGTGAGAAGATCGCCAGAATCTTCCTGATGGAAGC < 41bp 0.814134027978212 0.613701635438058 0.7670604 0.7640116 prediction 0.400864785080306 Functional Loss - RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45486469 chr10:45486472 synonymous SNV . 0 24 hm5C_associated_SNPs_98746 0 0 1 0 2 RASSF4 chr10:45486517 5'GT 45486517 Upstream 46bp
chr1 12918928 12918928 1 + G C LUAD 12918925 + 12918905 12918945 41 GGCAGAGCCTGCTGAGAGACCAGGCCTTGTCCATCTCTGCC GGCAGAGCCTGCTGAGAGACCAGCCCTTGTCCATCTCTGCC < 41bp 0.754880253939013 0.554450593819186 0.32245514 0.059759647 prediction 0.400859320239655 Functional Loss - PRAMEF2 ENSG00000120952 CDS Human protein_coding chr1:12918925 chr1:12918928 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_98748 0 0 0 0 1 PRAMEF2 chr1:12918840 3'AG 12918840 Downstream 89bp
chr1 235597525 235597525 1 + C T rs75832955 235597522 + 235597502 235597542 41 CCGAGTTTCTCTTCCAGGTGCTGCGGTGTGTCGCGGGGTGC CCGAGTTTCTCTTCCAGGTGCTGTGGTGTGTCGCGGGGTGC < 41bp 0.700426273734986 0.475221067323614 0.8740455 0.8730532 prediction 0.400852547469973 Functional Loss - TBCE ENSG00000116957 CDS Human protein_coding chr1:235597522 chr1:235597525 nonsynonymous SNV 0.137 0 24 hm5C_associated_SNPs_98750 0 0 1 0 2 TBCE chr1:235597519 3'AG 235597519 Downstream 7bp
chr1 235597525 235597525 1 + C T rs75832955 235597522 + 235597502 235597542 41 CCGAGTTTCTCTTCCAGGTGCTGCGGTGTGTCGCGGGGTGC CCGAGTTTCTCTTCCAGGTGCTGTGGTGTGTCGCGGGGTGC < 41bp 0.700426273734986 0.475221067323614 0.8740455 0.8730532 prediction 0.400852547469973 Functional Loss - TBCE ENSG00000116957 CDS Human protein_coding chr1:235597522 chr1:235597525 nonsynonymous SNV 0.137 0 24 hm5C_associated_SNPs_98750 0 0 1 0 2 TBCE chr1:235597595 5'GT 235597595 Upstream 71bp
chr7 106829866 106829866 1 + G A UCEC 106829863 + 106829843 106829883 41 TACTTACCGTAGAGTGTAAGCTGGACCACCCTTTCTATGTT TACTTACCGTAGAGTGTAAGCTGAACCACCCTTTCTATGTT < 41bp 0.802637961436494 0.602219848447129 0.15044463 0.1681442 prediction 0.400836225978729 Functional Loss - HBP1 ENSG00000105856 CDS Human protein_coding chr7:106829863 chr7:106829866 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_98755 0 0 1 0 1 HBP1 chr7:106829893 5'GT 106829893 Upstream 28bp
chr1 11254942 11254942 1 + C T SKCM 11254939 + 11254919 11254959 41 TGGTACAACTGCTGCACAGACTCCAACCTCAATGGAGTGTA TGGTACAACTGCTGCACAGACTCTAACCTCAATGGAGTGTA < 41bp 0.790841971941352 0.590425001667007 0.9417812 0.8775042 prediction 0.400833940548689 Functional Loss - ANGPTL7 ENSG00000171819 CDS Human protein_coding chr1:11254939 chr1:11254942 synonymous SNV . 0 24 hm5C_associated_SNPs_98756 0 0 0 0 1 ANGPTL7 chr1:11254911 3'AG 11254911 Downstream 32bp
chr2 120194498 120194498 1 + C T COAD 120194495 + 120194475 120194515 41 CTTTGGGCCAAAGGCAGCCCCGCCGGTCCTTCTTTGAATCC CTTTGGGCCAAAGGCAGCCCCGCTGGTCCTTCTTTGAATCC < 41bp 0.735553340475873 0.535138482924772 0.05178079 0.12183267 prediction 0.400829715102202 Functional Loss - TMEM37 ENSG00000171227 CDS Human protein_coding chr2:120194495 chr2:120194498 nonsynonymous SNV 0.640 1 24 hm5C_associated_SNPs_98758 0 0 1 0 1 TMEM37 chr2:120194465 3'AG 120194465 Downstream 34bp
chr19 1924189 1924189 1 + C T rs75734024 1924186 + 1924166 1924206 41 CACGGGCACTTGGCGGAACCCACCGTCGAGGGAGGCCCAGT CACGGGCACTTGGCGGAACCCACTGTCGAGGGAGGCCCAGT < 41bp 0.764818703120471 0.564404755705707 0.14784548 0.110423625 prediction 0.400827894829528 Functional Loss - SCAMP4 ENSG00000227500 CDS Human protein_coding chr19:1924186 chr19:1924189 nonsynonymous SNV 0.078 0 24 hm5C_associated_SNPs_98759 0 0 1 0 1 SCAMP4 chr19:1924107 3'AG 1924107 Downstream 83bp
chr10 104158595 104158595 1 + C T UCEC 104158592 + 104158572 104158612 41 GGGTGGAGGCTCTGGGGGTGCAGCCGGGGGCTACGGAGGAG GGGTGGAGGCTCTGGGGGTGCAGTCGGGGGCTACGGAGGAG < 41bp 0.700413083538702 0.497282186569402 0.8976807 0.82097673 prediction 0.400826167077404 Functional Loss - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104158592 chr10:104158595 nonsynonymous SNV 0.955 1 24 hm5C_associated_SNPs_98760 0 0 1 0 2 NFKB2 chr10:104158496 3'AG 104158496 Downstream 100bp
chr10 104158595 104158595 1 + C T UCEC 104158592 + 104158572 104158612 41 GGGTGGAGGCTCTGGGGGTGCAGCCGGGGGCTACGGAGGAG GGGTGGAGGCTCTGGGGGTGCAGTCGGGGGCTACGGAGGAG < 41bp 0.700413083538702 0.497282186569402 0.8976807 0.82097673 prediction 0.400826167077404 Functional Loss - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104158592 chr10:104158595 nonsynonymous SNV 0.955 1 24 hm5C_associated_SNPs_98760 0 0 1 0 2 NFKB2 chr10:104158621 5'GT 104158621 Upstream 27bp
chr18 77107872 77107872 1 + G T THYM 77107870 + 77107850 77107890 41 GCGGAACAGCTACAAGAGGTCGGCGGCACTCGGCCAGTTCG GCGGAACAGCTACAAGAGGTCGTCGGCACTCGGCCAGTTCG < 41bp 0.70041158106416 0.350756666174514 0.88297343 0.14882275 prediction 0.40082316212832 Functional Loss - ATP9B ENSG00000166377 CDS Human protein_coding chr18:77107870 chr18:77107872 nonsynonymous SNV 0.061 4 23 hm5C_associated_SNPs_98762 0 0 0 2 1 ATP9B chr18:77107925 5'GT 77107925 Upstream 54bp
chr2 228195496 228195496 1 + G A LUAD 228195493 + 228195473 228195513 41 CGCCAAACGCTGACCTGGAACAAGGATTCCAAGAAGGAGTT CGCCAAACGCTGACCTGGAACAAAGATTCCAAGAAGGAGTT < 41bp 0.803157648685789 0.602747586262643 0.3290987 0.16037595 prediction 0.400820124846291 Functional Loss - MFF;MFF ENSG00000168958 CDS Human protein_coding chr2:228195493 chr2:228195496 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_98763 0 0 1 0 1 MFF chr2:228195562 5'GT 228195562 Upstream 67bp
chr3 14725873 14725873 1 + C T BRCA 14725870 + 14725850 14725890 41 GCCGGGAGAAGTGGCTACAGCAGCGGACAGTTGTGGAAAGG GCCGGGAGAAGTGGCTACAGCAGTGGACAGTTGTGGAAAGG < 41bp 0.750597526442963 0.550187657588975 0.64749515 0.53109455 prediction 0.400819737707976 Functional Loss - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14725870 chr3:14725873 synonymous SNV . 0 24 hm5C_associated_SNPs_98764 0 0 0 0 1 C3orf20 chr3:14725889 5'GT 14725889 Upstream 17bp
chr1 55152086 55152086 1 + G A SARC 55152083 + 55152063 55152103 41 GTGGCTCCTCCCAAGGACACCAAGAAGGGTGCACAGCCCTC GTGGCTCCTCCCAAGGACACCAAAAAGGGTGCACAGCCCTC < 41bp 0.700408517214541 0.445414735729092 0.12039733 0.13748133 prediction 0.400817034429083 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55152083 chr1:55152086 synonymous SNV . 0 24 hm5C_associated_SNPs_98765 0 0 0 0 1 MROH7 chr1:55152121 5'GT 55152121 Upstream 36bp
chr3 178919301 178919301 1 + A T LUAD 178919299 + 178919279 178919319 41 GTGGATGTGATGAATACTTCCTAGAAAAATATCCTCTGAGT GTGGATGTGATGAATACTTCCTTGAAAAATATCCTCTGAGT < 41bp 0.728540696114299 0.528132311473319 0.20943627 0.06351611 prediction 0.400816769281959 Functional Loss - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178919299 chr3:178919301 synonymous SNV . 0 23 hm5C_associated_SNPs_98766 0 0 0 0 1 PIK3CA chr3:178919328 5'GT 178919328 Upstream 28bp
chr17 56274553 56274553 1 + A T UCEC 56274551 + 56274531 56274571 41 GGCCGGGCCCTGCTGCCCTTCGACAACCTGCACGATGACCC GGCCGGGCCCTGCTGCCCTTCGTCAACCTGCACGATGACCC < 41bp 0.720388006376283 0.519979733441202 0.15324336 0.09967998 prediction 0.400816545870163 Functional Loss - EPX ENSG00000121053 CDS Human protein_coding chr17:56274551 chr17:56274553 nonsynonymous SNV 0.680 0 23 hm5C_associated_SNPs_98767 0 0 0 0 1 EPX chr17:56274618 5'GT 56274618 Upstream 66bp
chr5 149915421 149915421 1 + C T CESC 149915418 + 149915398 149915438 41 ACCTGAAGCCAGCCCGCTACCGCCGTGGCTTCATCCACAAT ACCTGAAGCCAGCCCGCTACCGCTGTGGCTTCATCCACAAT < 41bp 0.754303164636045 0.553896200104205 0.3811865 0.08991331 prediction 0.40081392906368 Functional Loss - NDST1 ENSG00000070614 CDS Human protein_coding chr5:149915418 chr5:149915421 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_98769 0 0 0 0 1 NDST1 chr5:149915447 5'GT 149915447 Upstream 27bp
chr5 23522926 23522926 1 + C T LUSC 23522923 + 23522903 23522943 41 CATCTGATCTGCCGCTGGGTCTGCACTTTGGCCCTTATGAG CATCTGATCTGCCGCTGGGTCTGTACTTTGGCCCTTATGAG < 41bp 0.766087179618832 0.565680454430023 0.1007424 0.058466077 prediction 0.400813450377618 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23522923 chr5:23522926 nonsynonymous SNV 0.119 3 24 hm5C_associated_SNPs_98770 0 0 0 0 1 PRDM9 chr5:23522994 5'GT 23522994 Upstream 69bp
chr6 50791173 50791173 1 + G A UCEC 50791170 + 50791150 50791190 41 TCGCGGCTCTCCCAGCTGGGCTCGGTGTCCCAAGGACCCTA TCGCGGCTCTCCCAGCTGGGCTCAGTGTCCCAAGGACCCTA < 41bp 0.819945081594789 0.619538894021819 0.38890892 0.35678735 prediction 0.40081237514594 Functional Loss - TFAP2B ENSG00000008196 CDS Human protein_coding chr6:50791170 chr6:50791173 synonymous SNV . 0 24 hm5C_associated_SNPs_98771 0 0 0 0 1 TFAP2B chr6:50791120 3'AG 50791120 Downstream 54bp
chrX 135586542 135586542 1 + G A LUAD 135586539 + 135586519 135586559 41 TCAGGCAGTTGGATTGGAGACCTGAGAGGCGAGCCGGACCA TCAGGCAGTTGGATTGGAGACCTAAGAGGCGAGCCGGACCA < 41bp 0.700405816547441 0.453267419740399 0.24644414 0.18953279 prediction 0.400811633094881 Functional Loss - HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135586539 chrX:135586542 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_98772 0 0 1 0 2 HTATSF1 chrX:135586523 3'AG 135586523 Downstream 20bp
chrX 135586542 135586542 1 + G A LUAD 135586539 + 135586519 135586559 41 TCAGGCAGTTGGATTGGAGACCTGAGAGGCGAGCCGGACCA TCAGGCAGTTGGATTGGAGACCTAAGAGGCGAGCCGGACCA < 41bp 0.700405816547441 0.453267419740399 0.24644414 0.18953279 prediction 0.400811633094881 Functional Loss - HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135586539 chrX:135586542 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_98772 0 0 1 0 2 HTATSF1 chrX:135586622 5'GT 135586622 Upstream 81bp
chr2 219610450 219610450 1 + G T LUSC 219610446 + 219610426 219610466 41 CCTGGGAACAGAGGAAGTTGCTCCGATGGAAGATGAGCACA CCTGGGAACAGAGGAAGTTGCTCCTATGGAAGATGAGCACA < 41bp 0.75036394337666 0.549958352037955 0.30060923 0.24162972 prediction 0.400811182677411 Functional Loss - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219610446 chr2:219610450 nonsynonymous SNV 0.818 1 25 hm5C_associated_SNPs_98773 0 0 1 0 2 TTLL4 chr2:219610414 3'AG 219610414 Downstream 37bp
chr2 219610450 219610450 1 + G T LUSC 219610446 + 219610426 219610466 41 CCTGGGAACAGAGGAAGTTGCTCCGATGGAAGATGAGCACA CCTGGGAACAGAGGAAGTTGCTCCTATGGAAGATGAGCACA < 41bp 0.75036394337666 0.549958352037955 0.30060923 0.24162972 prediction 0.400811182677411 Functional Loss - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219610446 chr2:219610450 nonsynonymous SNV 0.818 1 25 hm5C_associated_SNPs_98773 0 0 1 0 2 TTLL4 chr2:219610524 5'GT 219610524 Upstream 75bp
chr22 46664478 46664478 1 + C T LUSC 46664476 + 46664456 46664496 41 GCCTGCAAGCTGTTCGATGCCACGCTGACCCAGGTATGCCT GCCTGCAAGCTGTTCGATGCCATGCTGACCCAGGTATGCCT < 41bp 0.700404279386736 0.430124222085234 0.35951373 0.32090998 prediction 0.400808558773472 Functional Loss - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46664476 chr22:46664478 nonsynonymous SNV 0.861 2 23 hm5C_associated_SNPs_98775 0 0 1 0 2 TTC38 chr22:46664411 3'AG 46664411 Downstream 68bp
chr22 46664478 46664478 1 + C T LUSC 46664476 + 46664456 46664496 41 GCCTGCAAGCTGTTCGATGCCACGCTGACCCAGGTATGCCT GCCTGCAAGCTGTTCGATGCCATGCTGACCCAGGTATGCCT < 41bp 0.700404279386736 0.430124222085234 0.35951373 0.32090998 prediction 0.400808558773472 Functional Loss - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46664476 chr22:46664478 nonsynonymous SNV 0.861 2 23 hm5C_associated_SNPs_98775 0 0 1 0 2 TTC38 chr22:46664488 5'GT 46664488 Upstream 11bp
chr3 36534720 36534720 1 + C T OV 36534717 + 36534697 36534737 41 GACCTAAGGAAACGCAGCAACAGCGGTGAGTGAGGGAGTTG GACCTAAGGAAACGCAGCAACAGTGGTGAGTGAGGGAGTTG < 41bp 0.755176460369639 0.5547735099339 0.3611976 0.26569217 prediction 0.400805900871479 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36534717 chr3:36534720 synonymous SNV . 0 24 hm5C_associated_SNPs_98777 0 0 0 9 2 STAC chr3:36534643 3'AG 36534643 Downstream 78bp
chr3 36534720 36534720 1 + C T OV 36534717 + 36534697 36534737 41 GACCTAAGGAAACGCAGCAACAGCGGTGAGTGAGGGAGTTG GACCTAAGGAAACGCAGCAACAGTGGTGAGTGAGGGAGTTG < 41bp 0.755176460369639 0.5547735099339 0.3611976 0.26569217 prediction 0.400805900871479 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36534717 chr3:36534720 synonymous SNV . 0 24 hm5C_associated_SNPs_98777 0 0 0 9 2 STAC chr3:36534721 5'GT 36534721 Upstream 2bp
chr8 85774560 85774560 1 + C T SKCM 85774557 + 85774537 85774577 41 TGATTACCACGGGCGTGTGCCTCCACCTCCCCGTGCAGTAA TGATTACCACGGGCGTGTGCCTCTACCTCCCCGTGCAGTAA < 41bp 0.702213095411365 0.501810344334731 0.9482472 0.9147381 prediction 0.400805502153268 Functional Loss - RALYL ENSG00000184672 CDS Human protein_coding chr8:85774557 chr8:85774560 nonsynonymous SNV 0.563 2 24 hm5C_associated_SNPs_98778 0 0 0 0 1 RALYL chr8:85774531 3'AG 85774531 Downstream 30bp
chr11 71507110 71507110 1 - C A rs76695292 71507114 - 71507094 71507134 41 GCTCCCGGCAGGCAGCCAGCCTCCGCAGGACCCCGACCAGC GCTCCCGGCAGGCAGCCAGCCTCCTCAGGACCCCGACCAGC < 41bp 0.736926471821616 0.53652378494435 0.18653205 0.05912745 prediction 0.400805373754531 Functional Loss - FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71507114 chr11:71507110 stopgain 0.002 0 25 hm5C_associated_SNPs_98779 0 0 0 0 1 FAM86C1 chr11:71507171 3'AG 71507171 Downstream 62bp
chr9 133577675 133577675 1 + G A UCEC 133577672 + 133577652 133577692 41 TGAGCACAAAGAAGAGGAAGCAGGGGGCTTCATTGCAAACC TGAGCACAAAGAAGAGGAAGCAGAGGGCTTCATTGCAAACC < 41bp 0.721083622051882 0.520682738427751 0.9236627 0.8468725 prediction 0.400801767248261 Functional Loss - EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133577672 chr9:133577675 nonsynonymous SNV 0.985 1 24 hm5C_associated_SNPs_98780 0 0 1 0 1 EXOSC2 chr9:133577697 5'GT 133577697 Upstream 23bp
chr3 111664163 111664163 1 + G T rs144826196 111664161 + 111664141 111664181 41 AAAGAAATACTCCAGCCTCTCTGGGGGGAAAGGGTTTCCCG AAAGAAATACTCCAGCCTCTCTTGGGGGAAAGGGTTTCCCG < 41bp 0.700400828584482 0.3575894998234 0.90776575 0.17054865 prediction 0.400801657168964 Functional Loss - PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111664161 chr3:111664163 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_98781 0 0 1 0 2 PHLDB2 chr3:111664115 3'AG 111664115 Downstream 49bp
chr3 111664163 111664163 1 + G T rs144826196 111664161 + 111664141 111664181 41 AAAGAAATACTCCAGCCTCTCTGGGGGGAAAGGGTTTCCCG AAAGAAATACTCCAGCCTCTCTTGGGGGAAAGGGTTTCCCG < 41bp 0.700400828584482 0.3575894998234 0.90776575 0.17054865 prediction 0.400801657168964 Functional Loss - PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111664161 chr3:111664163 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_98781 0 0 1 0 2 PHLDB2 chr3:111664204 5'GT 111664204 Upstream 42bp
chr3 111664164 111664164 1 + G A SKCM 111664161 + 111664141 111664181 41 AAAGAAATACTCCAGCCTCTCTGGGGGGAAAGGGTTTCCCG AAAGAAATACTCCAGCCTCTCTGAGGGGAAAGGGTTTCCCG < 41bp 0.700400828584482 0.466109139882965 0.90776575 0.33446014 prediction 0.400801657168964 Functional Loss - PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111664161 chr3:111664164 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_98782 0 0 1 0 2 PHLDB2 chr3:111664115 3'AG 111664115 Downstream 50bp
chr3 111664164 111664164 1 + G A SKCM 111664161 + 111664141 111664181 41 AAAGAAATACTCCAGCCTCTCTGGGGGGAAAGGGTTTCCCG AAAGAAATACTCCAGCCTCTCTGAGGGGAAAGGGTTTCCCG < 41bp 0.700400828584482 0.466109139882965 0.90776575 0.33446014 prediction 0.400801657168964 Functional Loss - PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111664161 chr3:111664164 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_98782 0 0 1 0 2 PHLDB2 chr3:111664204 5'GT 111664204 Upstream 41bp
chr12 126942971 126942971 1 + T C rs7960479 126942970 + 126942950 126942990 41 CAGTGTGGACTCCCGCTTCCCTGCACTGCTGCTCCATCCTC CAGTGTGGACTCCCGCTTCCCCGCACTGCTGCTCCATCCTC < 41bp 0.777479477405825 0.577078676601421 0.13657758 0.16602728 prediction 0.400801601608809 Functional Loss - LINC02347 ENSG00000214043 ncRNA_exonic Human lincRNA chr12:126942970 chr12:126942971 . . 0 22 hm5C_associated_SNPs_98783 0 0 0 0 1 LINC02347 chr12:126942887 3'AG 126942887 Downstream 85bp
chr3 52361971 52361971 1 + T C COAD 52361970 + 52361950 52361990 41 TGGGCTTGGAGCCAGGGTCTCTGGACAGGAAACCTGTCCCG TGGGCTTGGAGCCAGGGTCTCCGGACAGGAAACCTGTCCCG < 41bp 0.732762326369393 0.532362723286157 0.655401 0.7323675 prediction 0.400799206166472 Functional Loss - DNAH1 ENSG00000114841 CDS Human protein_coding chr3:52361970 chr3:52361971 nonsynonymous SNV 0.893 0 22 hm5C_associated_SNPs_98784 0 0 1 0 2 DNAH1 chr3:52361898 3'AG 52361898 Downstream 74bp
chr3 52361971 52361971 1 + T C COAD 52361970 + 52361950 52361990 41 TGGGCTTGGAGCCAGGGTCTCTGGACAGGAAACCTGTCCCG TGGGCTTGGAGCCAGGGTCTCCGGACAGGAAACCTGTCCCG < 41bp 0.732762326369393 0.532362723286157 0.655401 0.7323675 prediction 0.400799206166472 Functional Loss - DNAH1 ENSG00000114841 CDS Human protein_coding chr3:52361970 chr3:52361971 nonsynonymous SNV 0.893 0 22 hm5C_associated_SNPs_98784 0 0 1 0 2 DNAH1 chr3:52362030 5'GT 52362030 Upstream 60bp
chr3 179426714 179426714 1 + G T UCEC 179426711 + 179426691 179426731 41 GACATGGGCTACCCACTAGCCGTGAAACTGGGAACCATCAC GACATGGGCTACCCACTAGCCGTTAAACTGGGAACCATCAC < 41bp 0.700398124941259 0.316250452559471 0.29629314 0.24938181 prediction 0.400796249882519 Functional Loss - USP13 ENSG00000058056 CDS Human protein_coding chr3:179426711 chr3:179426714 synonymous SNV . 0 24 hm5C_associated_SNPs_98786 0 0 0 0 1 USP13 chr3:179426745 5'GT 179426745 Upstream 32bp
chr10 81109500 81109500 1 + C T SKCM 81109497 + 81109477 81109517 41 TTCCACAGGGTGATCCCTTCCTTCATGTGCCAGGTAATGTA TTCCACAGGGTGATCCCTTCCTTTATGTGCCAGGTAATGTA < 41bp 0.700394624769898 0.467089213473778 0.6229474 0.28575757 prediction 0.400789249539797 Functional Loss - PPIF ENSG00000108179 CDS Human protein_coding chr10:81109497 chr10:81109500 synonymous SNV . 0 24 hm5C_associated_SNPs_98791 0 0 1 0 2 PPIF chr10:81109421 3'AG 81109421 Downstream 80bp
chr10 81109500 81109500 1 + C T SKCM 81109497 + 81109477 81109517 41 TTCCACAGGGTGATCCCTTCCTTCATGTGCCAGGTAATGTA TTCCACAGGGTGATCCCTTCCTTTATGTGCCAGGTAATGTA < 41bp 0.700394624769898 0.467089213473778 0.6229474 0.28575757 prediction 0.400789249539797 Functional Loss - PPIF ENSG00000108179 CDS Human protein_coding chr10:81109497 chr10:81109500 synonymous SNV . 0 24 hm5C_associated_SNPs_98791 0 0 1 0 2 PPIF chr10:81109509 5'GT 81109509 Upstream 10bp
chr12 7025635 7025635 1 + T C LIHC 7025634 + 7025614 7025654 41 CTACGGGCATCTATGAGGCCCTGGAGCTGAGGGATGGAGAC CTACGGGCATCTATGAGGCCCCGGAGCTGAGGGATGGAGAC < 41bp 0.840232400564982 0.639846314639268 0.45874482 0.6877332 prediction 0.400772171851427 Functional Loss - ENO2 ENSG00000111674 CDS Human protein_coding chr12:7025634 chr12:7025635 nonsynonymous SNV 0.961 2 22 hm5C_associated_SNPs_98798 0 0 1 0 2 ENO2 chr12:7025581 3'AG 7025581 Downstream 55bp
chr12 7025635 7025635 1 + T C LIHC 7025634 + 7025614 7025654 41 CTACGGGCATCTATGAGGCCCTGGAGCTGAGGGATGGAGAC CTACGGGCATCTATGAGGCCCCGGAGCTGAGGGATGGAGAC < 41bp 0.840232400564982 0.639846314639268 0.45874482 0.6877332 prediction 0.400772171851427 Functional Loss - ENO2 ENSG00000111674 CDS Human protein_coding chr12:7025634 chr12:7025635 nonsynonymous SNV 0.961 2 22 hm5C_associated_SNPs_98798 0 0 1 0 2 ENO2 chr12:7025676 5'GT 7025676 Upstream 42bp
chr1 15771139 15771139 1 + C T UCEC 15771136 + 15771116 15771156 41 CTGATAAGCTGCAGCAGGGCCTGCAGCCCGTGGTGGATCAC CTGATAAGCTGCAGCAGGGCCTGTAGCCCGTGGTGGATCAC < 41bp 0.775955943536844 0.575570870080203 0.24637613 0.20330235 prediction 0.400770146913281 Functional Loss - CTRC ENSG00000162438 CDS Human protein_coding chr1:15771136 chr1:15771139 stopgain 0.953 1 24 hm5C_associated_SNPs_98800 0 0 0 0 1 CTRC chr1:15771101 3'AG 15771101 Downstream 39bp
chr15 77310520 77310520 1 + A T THYM 77310518 + 77310498 77310538 41 TTCACAGCCCACACGGGCTACGAGGTGCTGCTGCAGCGGCT TTCACAGCCCACACGGGCTACGTGGTGCTGCTGCAGCGGCT < 41bp 0.700384097014103 0.489204580943642 0.8833147 0.47884774 prediction 0.400768194028206 Functional Loss - PSTPIP1 ENSG00000140368 CDS Human protein_coding chr15:77310518 chr15:77310520 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_98801 0 0 0 0 2 PSTPIP1 chr15:77310489 3'AG 77310489 Downstream 32bp
chr15 77310520 77310520 1 + A T THYM 77310518 + 77310498 77310538 41 TTCACAGCCCACACGGGCTACGAGGTGCTGCTGCAGCGGCT TTCACAGCCCACACGGGCTACGTGGTGCTGCTGCAGCGGCT < 41bp 0.700384097014103 0.489204580943642 0.8833147 0.47884774 prediction 0.400768194028206 Functional Loss - PSTPIP1 ENSG00000140368 CDS Human protein_coding chr15:77310518 chr15:77310520 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_98801 0 0 0 0 2 PSTPIP1 chr15:77310589 5'GT 77310589 Upstream 70bp
chr3 28476704 28476704 1 + C T SKCM 28476701 + 28476681 28476721 41 ACATAGAATTCCTGGGCGATCCCCATTCAAGATCATGGATA ACATAGAATTCCTGGGCGATCCCTATTCAAGATCATGGATA < 41bp 0.700380508787441 0.473157198767111 0.30760282 0.057661533 prediction 0.400761017574881 Functional Loss - ZCWPW2 ENSG00000206559 CDS Human protein_coding chr3:28476701 chr3:28476704 nonsynonymous SNV 0.988 2 24 hm5C_associated_SNPs_98804 0 0 0 0 1 ZCWPW2 chr3:28476760 5'GT 28476760 Upstream 57bp
chr17 61619753 61619753 1 + G T UCEC 61619749 + 61619729 61619769 41 GGACATGTACCCGGCCTTTGCGGAGAGCTTCTGGAGTAAGC GGACATGTACCCGGCCTTTGCGGATAGCTTCTGGAGTAAGC < 41bp 0.700379633391259 0.492129303735636 0.9044821 0.5562024 prediction 0.400759266782518 Functional Loss - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61619749 chr17:61619753 nonsynonymous SNV 0.969 1 25 hm5C_associated_SNPs_98806 0 0 0 0 1 KCNH6 chr17:61619795 5'GT 61619795 Upstream 43bp
chr2 216946618 216946618 1 + G C rs549270844 216946614 + 216946594 216946634 41 GGCCCCGCCCCGCCCGCCGGCCGCGGCAAAGCCGCATCCTC GGCCCCGCCCCGCCCGCCGGCCGCCGCAAAGCCGCATCCTC < 41bp 0.700377352555785 0.413347326556597 0.83225155 0.52536494 prediction 0.40075470511157 Functional Loss - TMEM169 ENSG00000163449 UTR5 Human protein_coding chr2:216946614 chr2:216946618 . . 0 25 hm5C_associated_SNPs_98807 0 0 0 0 3 TMEM169 chr2:216946696 5'GT 216946696 Upstream 79bp
chr2 216946618 216946618 1 + G C rs549270844 216946614 + 216946594 216946634 41 GGCCCCGCCCCGCCCGCCGGCCGCGGCAAAGCCGCATCCTC GGCCCCGCCCCGCCCGCCGGCCGCCGCAAAGCCGCATCCTC < 41bp 0.700377352555785 0.413347326556597 0.83225155 0.52536494 prediction 0.40075470511157 Functional Loss - TMEM169 ENSG00000163449 UTR5 Human protein_coding chr2:216946614 chr2:216946618 . . 0 25 hm5C_associated_SNPs_98807 0 0 0 0 3 TMEM169 chr2:216946698 5'GT 216946698 Upstream 81bp
chr2 216946618 216946618 1 + G C rs549270844 216946614 + 216946594 216946634 41 GGCCCCGCCCCGCCCGCCGGCCGCGGCAAAGCCGCATCCTC GGCCCCGCCCCGCCCGCCGGCCGCCGCAAAGCCGCATCCTC < 41bp 0.700377352555785 0.413347326556597 0.83225155 0.52536494 prediction 0.40075470511157 Functional Loss - TMEM169 ENSG00000163449 UTR5 Human protein_coding chr2:216946614 chr2:216946618 . . 0 25 hm5C_associated_SNPs_98807 0 0 0 0 3 TMEM169 chr2:216946702 5'GT 216946702 Upstream 85bp
chr12 52164324 52164324 1 + C T COAD 52164321 + 52164301 52164341 41 CGCTGGTGCCAGGTTGTGTCCAGCGGTTCAAGTGCTGCCAG CGCTGGTGCCAGGTTGTGTCCAGTGGTTCAAGTGCTGCCAG < 41bp 0.729010372499747 0.528638544842513 0.89841425 0.86000633 prediction 0.400743655314466 Functional Loss - SCN8A ENSG00000196876 CDS Human protein_coding chr12:52164321 chr12:52164324 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_98812 0 0 0 0 1 SCN8A chr12:52164313 3'AG 52164313 Downstream 12bp
chr1 224922331 224922331 1 + C T LUSC 224922328 + 224922308 224922348 41 CCACCGGTGGTCATGAATGCCGACACTTTGAGTTACTGTCA CCACCGGTGGTCATGAATGCCGATACTTTGAGTTACTGTCA < 41bp 0.760587617230372 0.560217033247182 0.04944691 0.14542449 prediction 0.400741167966379 Functional Loss - CNIH3 ENSG00000143786 CDS Human protein_coding chr1:224922328 chr1:224922331 synonymous SNV . 0 24 hm5C_associated_SNPs_98813 0 0 1 0 2 CNIH3 chr1:224922265 3'AG 224922265 Downstream 67bp
chr1 224922331 224922331 1 + C T LUSC 224922328 + 224922308 224922348 41 CCACCGGTGGTCATGAATGCCGACACTTTGAGTTACTGTCA CCACCGGTGGTCATGAATGCCGATACTTTGAGTTACTGTCA < 41bp 0.760587617230372 0.560217033247182 0.04944691 0.14542449 prediction 0.400741167966379 Functional Loss - CNIH3 ENSG00000143786 CDS Human protein_coding chr1:224922328 chr1:224922331 synonymous SNV . 0 24 hm5C_associated_SNPs_98813 0 0 1 0 2 CNIH3 chr1:224922408 5'GT 224922408 Upstream 78bp
chr9 132637665 132637665 1 + C T GBM 132637662 + 132637642 132637682 41 CCATGCGGGAGCCCAGCCTGCTGCGGTTCTACGTGTCCCGC CCATGCGGGAGCCCAGCCTGCTGTGGTTCTACGTGTCCCGC < 41bp 0.742059917438958 0.541690532488177 0.43961954 0.34100622 prediction 0.400738769901563 Functional Loss - USP20 ENSG00000136878 CDS Human protein_coding chr9:132637662 chr9:132637665 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_98814 0 0 0 0 2 USP20 chr9:132637589 3'AG 132637589 Downstream 77bp
chr9 132637665 132637665 1 + C T GBM 132637662 + 132637642 132637682 41 CCATGCGGGAGCCCAGCCTGCTGCGGTTCTACGTGTCCCGC CCATGCGGGAGCCCAGCCTGCTGTGGTTCTACGTGTCCCGC < 41bp 0.742059917438958 0.541690532488177 0.43961954 0.34100622 prediction 0.400738769901563 Functional Loss - USP20 ENSG00000136878 CDS Human protein_coding chr9:132637662 chr9:132637665 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_98814 0 0 0 0 2 USP20 chr9:132637758 5'GT 132637758 Upstream 94bp
chr8 104427088 104427088 1 - C T ESCA 104427091 - 104427071 104427111 41 CGCCACGTCCGGTATGAGAACCTGATAGCGGGCGTGAGCGG CGCCACGTCCGGTATGAGAACCTAATAGCGGGCGTGAGCGG < 41bp 0.700367057356217 0.477597805708684 0.12367758 0.11846495 prediction 0.400734114712434 Functional Loss - SLC25A32 ENSG00000164933 CDS Human protein_coding chr8:104427091 chr8:104427088 synonymous SNV . 0 24 hm5C_associated_SNPs_98817 0 0 1 0 1 SLC25A32 chr8:104427012 5'GT 104427012 Upstream 77bp
chr3 114026794 114026794 1 + C T UCEC 114026791 + 114026771 114026811 41 AGGTGACCTCAGGAGAAAATCAGCTGGACAGGAGGAATGGA AGGTGACCTCAGGAGAAAATCAGTTGGACAGGAGGAATGGA < 41bp 0.734762587930174 0.534396126711993 0.8675927 0.64883864 prediction 0.400732922436362 Functional Loss - TIGIT ENSG00000181847 CDS Human protein_coding chr3:114026791 chr3:114026794 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_98818 0 0 0 0 1 TIGIT chr3:114026742 3'AG 114026742 Downstream 53bp
chr3 197483421 197483421 1 + G T UCEC 197483419 + 197483399 197483439 41 GAGTGCGATGGGGAATCCAACAGAATTCTGGTAAGTTTTGA GAGTGCGATGGGGAATCCAACATAATTCTGGTAAGTTTTGA < 41bp 0.700361937545243 0.356996337246738 0.58529377 0.2348409 prediction 0.400723875090486 Functional Loss - FYTTD1 ENSG00000122068 CDS Human protein_coding chr3:197483419 chr3:197483421 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_98819 0 0 1 0 1 FYTTD1 chr3:197483428 5'GT 197483428 Upstream 8bp
chr15 84237334 84237334 1 + G A ESCA 84237331 + 84237311 84237351 41 CTGTGTCGAAGATCCGAGGGCAGGTGAAGACCACAGGATAC CTGTGTCGAAGATCCGAGGGCAGATGAAGACCACAGGATAC < 41bp 0.700359435450372 0.456991556787682 0.9103552 0.8946709 prediction 0.400718870900744 Functional Loss - SH3GL3 ENSG00000140600 CDS Human protein_coding chr15:84237331 chr15:84237334 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_98820 0 0 1 0 3 SH3GL3 chr15:84237281 3'AG 84237281 Downstream 54bp
chr15 84237334 84237334 1 + G A ESCA 84237331 + 84237311 84237351 41 CTGTGTCGAAGATCCGAGGGCAGGTGAAGACCACAGGATAC CTGTGTCGAAGATCCGAGGGCAGATGAAGACCACAGGATAC < 41bp 0.700359435450372 0.456991556787682 0.9103552 0.8946709 prediction 0.400718870900744 Functional Loss - SH3GL3 ENSG00000140600 CDS Human protein_coding chr15:84237331 chr15:84237334 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_98820 0 0 1 0 3 SH3GL3 chr15:84237288 3'AG 84237288 Downstream 47bp
chr15 84237334 84237334 1 + G A ESCA 84237331 + 84237311 84237351 41 CTGTGTCGAAGATCCGAGGGCAGGTGAAGACCACAGGATAC CTGTGTCGAAGATCCGAGGGCAGATGAAGACCACAGGATAC < 41bp 0.700359435450372 0.456991556787682 0.9103552 0.8946709 prediction 0.400718870900744 Functional Loss - SH3GL3 ENSG00000140600 CDS Human protein_coding chr15:84237331 chr15:84237334 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_98820 0 0 1 0 3 SH3GL3 chr15:84237424 5'GT 84237424 Upstream 91bp
chr7 99818436 99818436 1 + G A SKCM 99818433 + 99818413 99818453 41 CAGCCCCCAGGCACCGAGAGCACGAGCATGGGTGAGGAGGG CAGCCCCCAGGCACCGAGAGCACAAGCATGGGTGAGGAGGG < 41bp 0.826173227481734 0.625813909716526 0.26087895 0.10618362 prediction 0.400718635530416 Functional Loss - PVRIG ENSG00000213413 CDS Human protein_coding chr7:99818433 chr7:99818436 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_98821 0 0 0 0 2 PVRIG chr7:99818383 3'AG 99818383 Downstream 54bp
chr7 99818436 99818436 1 + G A SKCM 99818433 + 99818413 99818453 41 CAGCCCCCAGGCACCGAGAGCACGAGCATGGGTGAGGAGGG CAGCCCCCAGGCACCGAGAGCACAAGCATGGGTGAGGAGGG < 41bp 0.826173227481734 0.625813909716526 0.26087895 0.10618362 prediction 0.400718635530416 Functional Loss - PVRIG ENSG00000213413 CDS Human protein_coding chr7:99818433 chr7:99818436 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_98821 0 0 0 0 2 PVRIG chr7:99818443 5'GT 99818443 Upstream 8bp
chr17 38504713 38504713 1 + C T OV 38504710 + 38504690 38504730 41 GGGGTCAGCGCCTGTGAGGGCTGCAAGGTGAGTTGAAGGGG GGGGTCAGCGCCTGTGAGGGCTGTAAGGTGAGTTGAAGGGG < 41bp 0.700358710722171 0.480133379670716 0.27786234 0.34340554 prediction 0.400717421444342 Functional Loss - RARA ENSG00000131759 CDS Human protein_coding chr17:38504710 chr17:38504713 synonymous SNV . 0 24 hm5C_associated_SNPs_98822 0 0 1 0 1 RARA chr17:38504716 5'GT 38504716 Upstream 4bp
chr17 74141523 74141523 1 + G A rs147483199 74141520 + 74141500 74141540 41 CAGGGCAGCCCAGGAGCCGGCACGGAAGGAGCAGGATGCGT CAGGGCAGCCCAGGAGCCGGCACAGAAGGAGCAGGATGCGT < 41bp 0.823488725562774 0.623131754786309 0.67130446 0.4458183 prediction 0.400713941552931 Functional Loss - RNF157-AS1 ENSG00000267128 ncRNA_exonic Human antisense chr17:74141520 chr17:74141523 . . 0 24 hm5C_associated_SNPs_98823 0 0 0 0 1 RNF157-AS1 chr17:74141503 3'AG 74141503 Downstream 21bp
chr6 33658853 33658853 1 + G A rs2229641 33658850 + 33658830 33658870 41 TCCTCAAGGATGACTTCATTCTCGAGGTCGACCGGCTGCCC TCCTCAAGGATGACTTCATTCTCAAGGTCGACCGGCTGCCC < 41bp 0.793727099285564 0.593372618873584 0.07766625 0.022662997 prediction 0.40070896082396 Functional Loss - ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33658850 chr6:33658853 nonsynonymous SNV 0.987 5 24 hm5C_associated_SNPs_98827 0 0 1 0 1 ITPR3 chr6:33658886 5'GT 33658886 Upstream 34bp
chr5 154346296 154346296 1 + G A rs3749671 154346293 + 154346273 154346313 41 GCCTGAAACGCATCCGCTACCATGGCAGAGGTCGCTTTGGG GCCTGAAACGCATCCGCTACCATAGCAGAGGTCGCTTTGGG < 41bp 0.792096766240376 0.591747336911887 0.52592415 0.35969394 prediction 0.400698858656979 Functional Loss - MRPL22 ENSG00000082515 CDS Human protein_coding chr5:154346293 chr5:154346296 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_98832 0 0 1 0 1 MRPL22 chr5:154346246 3'AG 154346246 Downstream 51bp
chr19 35510307 35510307 1 + C T PRAD 35510304 + 35510284 35510324 41 TGTCCCTGCAGACGCTGTTCCGGCGCGGCCCCCAGGCCGGC TGTCCCTGCAGACGCTGTTCCGGTGCGGCCCCCAGGCCGGC < 41bp 0.74559935445081 0.545250459006662 0.9036546 0.86377424 prediction 0.400697790888295 Functional Loss - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35510304 chr19:35510307 nonsynonymous SNV 0.989 3 24 hm5C_associated_SNPs_98834 0 0 1 0 1 GRAMD1A chr19:35510295 3'AG 35510295 Downstream 13bp
chr20 36939007 36939007 1 + C T rs575683984 36939004 + 36938984 36939024 41 ACCATCACCTGCTCCAGCTGCAGCAGCCACATCAACAGTGT ACCATCACCTGCTCCAGCTGCAGTAGCCACATCAACAGTGT < 41bp 0.755735823486256 0.555390783284643 0.21898365 0.14450455 prediction 0.400690080403227 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36939004 chr20:36939007 synonymous SNV . 0 24 hm5C_associated_SNPs_98835 0 0 0 0 1 BPI chr20:36939054 5'GT 36939054 Upstream 48bp
chr4 106848542 106848542 1 + G T KIRC 106848539 + 106848519 106848559 41 GGTGAATGTATCGGGCCAAACAAGTGCAAGTGTCATCCTGG GGTGAATGTATCGGGCCAAACAATTGCAAGTGTCATCCTGG < 41bp 0.700345025501376 0.301805808933037 0.64188087 0.14188802 prediction 0.400690051002751 Functional Loss - NPNT ENSG00000168743 CDS Human protein_coding chr4:106848539 chr4:106848542 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_98836 0 0 1 0 2 NPNT chr4:106848493 3'AG 106848493 Downstream 50bp
chr4 106848542 106848542 1 + G T KIRC 106848539 + 106848519 106848559 41 GGTGAATGTATCGGGCCAAACAAGTGCAAGTGTCATCCTGG GGTGAATGTATCGGGCCAAACAATTGCAAGTGTCATCCTGG < 41bp 0.700345025501376 0.301805808933037 0.64188087 0.14188802 prediction 0.400690051002751 Functional Loss - NPNT ENSG00000168743 CDS Human protein_coding chr4:106848539 chr4:106848542 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_98836 0 0 1 0 2 NPNT chr4:106848585 5'GT 106848585 Upstream 44bp
chr19 36603843 36603843 1 + A T rs149534478 36603841 + 36603821 36603861 41 TTTCATGACGCCTTCGATCTCAAGCGCCACATGAGGACTCA TTTCATGACGCCTTCGATCTCATGCGCCACATGAGGACTCA < 41bp 0.71805578400392 0.517713054129458 0.4364207 0.12466285 prediction 0.400685459748924 Functional Loss - OVOL3 ENSG00000105261 CDS Human protein_coding chr19:36603841 chr19:36603843 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_98839 0 0 1 0 1 OVOL3 chr19:36603866 5'GT 36603866 Upstream 24bp
chr20 60448842 60448842 1 + G A SKCM 60448839 + 60448819 60448859 41 GACGACAGCACCACGGCCAACGGGATGGTGCGGTACCGGAT GACGACAGCACCACGGCCAACGGAATGGTGCGGTACCGGAT < 41bp 0.797783342544379 0.597442116321118 0.84585524 0.43624482 prediction 0.400682452446521 Functional Loss - CDH4 ENSG00000179242 CDS Human protein_coding chr20:60448839 chr20:60448842 synonymous SNV . 0 24 hm5C_associated_SNPs_98840 0 0 1 0 1 CDH4 chr20:60448784 3'AG 60448784 Downstream 59bp
chr15 25456847 25456847 1 + G T ESCA 25456845 + 25456825 25456865 41 GCCCCTGGTGCACTGAAGCTCAGGCCCTTCCTGGCCCCTTG GCCCCTGGTGCACTGAAGCTCATGCCCTTCCTGGCCCCTTG < 41bp 0.700339938449074 0.360134626002075 0.9116755 0.48270154 prediction 0.400679876898148 Functional Loss - PWAR4;SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25456845 chr15:25456847 . . 0 23 hm5C_associated_SNPs_98841 0 0 0 0 2 SNHG14 chr15:25456754 3'AG 25456754 Downstream 94bp
chr15 25456847 25456847 1 + G T ESCA 25456845 + 25456825 25456865 41 GCCCCTGGTGCACTGAAGCTCAGGCCCTTCCTGGCCCCTTG GCCCCTGGTGCACTGAAGCTCATGCCCTTCCTGGCCCCTTG < 41bp 0.700339938449074 0.360134626002075 0.9116755 0.48270154 prediction 0.400679876898148 Functional Loss - PWAR4;SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25456845 chr15:25456847 . . 0 23 hm5C_associated_SNPs_98841 0 0 0 0 2 PWAR4;SNHG14 chr15:25456885 5'GT 25456885 Upstream 39bp
chr15 74178912 74178912 1 + C T UCEC 74178909 + 74178889 74178929 41 CCTGGTTCTGCTTCTGCTTCCAGCGTGCCTTCAAGTCCTTC CCTGGTTCTGCTTCTGCTTCCAGTGTGCCTTCAAGTCCTTC < 41bp 0.73188592767913 0.531546933489595 0.24074891 0.11520794 prediction 0.400677988379069 Functional Loss - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74178909 chr15:74178912 nonsynonymous SNV 0.964 2 24 hm5C_associated_SNPs_98842 0 0 0 0 2 TBC1D21 chr15:74178853 3'AG 74178853 Downstream 60bp
chr15 74178912 74178912 1 + C T UCEC 74178909 + 74178889 74178929 41 CCTGGTTCTGCTTCTGCTTCCAGCGTGCCTTCAAGTCCTTC CCTGGTTCTGCTTCTGCTTCCAGTGTGCCTTCAAGTCCTTC < 41bp 0.73188592767913 0.531546933489595 0.24074891 0.11520794 prediction 0.400677988379069 Functional Loss - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74178909 chr15:74178912 nonsynonymous SNV 0.964 2 24 hm5C_associated_SNPs_98842 0 0 0 0 2 TBC1D21 chr15:74178953 5'GT 74178953 Upstream 42bp
chr1 45232618 45232618 1 + C T PRAD 45232615 + 45232595 45232635 41 AAGCCAAGCATTTCTCAGCCCTGCGAGGTGGGTGTGGCTGG AAGCCAAGCATTTCTCAGCCCTGTGAGGTGGGTGTGGCTGG < 41bp 0.700338598331232 0.474376008973694 0.16833046 0.17532247 prediction 0.400677196662463 Functional Loss - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45232615 chr1:45232618 stopgain 0.432 0 24 hm5C_associated_SNPs_98843 0 0 1 0 1 KIF2C chr1:45232621 5'GT 45232621 Upstream 4bp
chr2 219499293 219499293 1 + G A SKCM 219499290 + 219499270 219499310 41 CCAGACTTCCTGCGTGATATCCAGAGTTCTTTCCACCCTGA CCAGACTTCCTGCGTGATATCCAAAGTTCTTTCCACCCTGA < 41bp 0.830588045319671 0.630250310062492 0.93096685 0.8826694 prediction 0.400675470514358 Functional Loss - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219499290 chr2:219499293 synonymous SNV . 0 24 hm5C_associated_SNPs_98844 0 0 0 0 1 PLCD4 chr2:219499353 5'GT 219499353 Upstream 61bp
chr9 141070119 141070119 1 + C T UCEC 141070117 + 141070097 141070137 41 GGCACCATGGACTCTGTGCGCTCGGGGCCCTTCGGGCAGGT GGCACCATGGACTCTGTGCGCTTGGGGCCCTTCGGGCAGGT < 41bp 0.839407680048474 0.63907009226305 0.35601175 0.3859678 prediction 0.400675175570847 Functional Loss - TUBBP5 ENSG00000159247 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:141070117 chr9:141070119 . . 0 23 hm5C_associated_SNPs_98845 0 0 0 0 1 TUBBP5 chr9:141070053 3'AG 141070053 Downstream 67bp
chr9 136268934 136268934 1 + T C rs35283679 136268933 + 136268913 136268953 41 GAAGCCAGCTGCGGAGTCTTCTGGCTGCTGTCCCTGCTGGG GAAGCCAGCTGCGGAGTCTTCCGGCTGCTGTCCCTGCTGGG < 41bp 0.796264606986766 0.595929214903896 0.8869812 0.92012733 prediction 0.40067078416574 Functional Loss - STKLD1 ENSG00000198870 CDS Human protein_coding chr9:136268933 chr9:136268934 nonsynonymous SNV 0.937 4 22 hm5C_associated_SNPs_98846 0 0 0 0 1 STKLD1 chr9:136268952 5'GT 136268952 Upstream 19bp
chr19 41920030 41920030 1 + C T rs34442879 41920028 + 41920008 41920048 41 AGTGCCGCCGCCCTGGACAACACGGACCTGGTGTTTGGCCA AGTGCCGCCGCCCTGGACAACATGGACCTGGTGTTTGGCCA < 41bp 0.858207105541298 0.657873590026001 0.49340174 0.72100013 prediction 0.400667031030594 Functional Loss - BCKDHA ENSG00000248098;ENSG00000255730 CDS Human other chr19:41920028 chr19:41920030 nonsynonymous SNV 0.969 4 23 hm5C_associated_SNPs_98848 2 0 1 0 2 BCKDHA chr19:41919954 3'AG 41919954 Downstream 77bp
chr19 41920030 41920030 1 + C T rs34442879 41920028 + 41920008 41920048 41 AGTGCCGCCGCCCTGGACAACACGGACCTGGTGTTTGGCCA AGTGCCGCCGCCCTGGACAACATGGACCTGGTGTTTGGCCA < 41bp 0.858207105541298 0.657873590026001 0.49340174 0.72100013 prediction 0.400667031030594 Functional Loss - BCKDHA ENSG00000248098;ENSG00000255730 CDS Human other chr19:41920028 chr19:41920030 nonsynonymous SNV 0.969 4 23 hm5C_associated_SNPs_98848 2 0 1 0 2 BCKDHA chr19:41920062 5'GT 41920062 Upstream 33bp
chr19 3589856 3589856 1 + C T LGG 3589854 + 3589834 3589874 41 TGAGTTTGAGGAGGAGGCATCTCGGAAGGTTGATGACCTGC TGAGTTTGAGGAGGAGGCATCTTGGAAGGTTGATGACCTGC < 41bp 0.700331785394827 0.423992315159579 0.76823014 0.52638537 prediction 0.400663570789654 Functional Loss - GIPC3 ENSG00000179855 CDS Human protein_coding chr19:3589854 chr19:3589856 nonsynonymous SNV 0.117 3 23 hm5C_associated_SNPs_98850 0 0 0 0 2 GIPC3 chr19:3589829 3'AG 3589829 Downstream 28bp
chr19 3589856 3589856 1 + C T LGG 3589854 + 3589834 3589874 41 TGAGTTTGAGGAGGAGGCATCTCGGAAGGTTGATGACCTGC TGAGTTTGAGGAGGAGGCATCTTGGAAGGTTGATGACCTGC < 41bp 0.700331785394827 0.423992315159579 0.76823014 0.52638537 prediction 0.400663570789654 Functional Loss - GIPC3 ENSG00000179855 CDS Human protein_coding chr19:3589854 chr19:3589856 nonsynonymous SNV 0.117 3 23 hm5C_associated_SNPs_98850 0 0 0 0 2 GIPC3 chr19:3589910 5'GT 3589910 Upstream 55bp
chr19 3589857 3589857 1 + G A UCEC 3589854 + 3589834 3589874 41 TGAGTTTGAGGAGGAGGCATCTCGGAAGGTTGATGACCTGC TGAGTTTGAGGAGGAGGCATCTCAGAAGGTTGATGACCTGC < 41bp 0.700331785394827 0.446812195281281 0.76823014 0.49781653 prediction 0.400663570789654 Functional Loss - GIPC3 ENSG00000179855 CDS Human protein_coding chr19:3589854 chr19:3589857 nonsynonymous SNV 0.172 0 24 hm5C_associated_SNPs_98851 0 0 0 0 2 GIPC3 chr19:3589829 3'AG 3589829 Downstream 29bp
chr19 3589857 3589857 1 + G A UCEC 3589854 + 3589834 3589874 41 TGAGTTTGAGGAGGAGGCATCTCGGAAGGTTGATGACCTGC TGAGTTTGAGGAGGAGGCATCTCAGAAGGTTGATGACCTGC < 41bp 0.700331785394827 0.446812195281281 0.76823014 0.49781653 prediction 0.400663570789654 Functional Loss - GIPC3 ENSG00000179855 CDS Human protein_coding chr19:3589854 chr19:3589857 nonsynonymous SNV 0.172 0 24 hm5C_associated_SNPs_98851 0 0 0 0 2 GIPC3 chr19:3589910 5'GT 3589910 Upstream 54bp
chr16 1389529 1389529 1 + G A UCEC 1389526 + 1389506 1389546 41 CTCTACGAGGAGGCCCTGTACACGGTGCTTTACCGCGCGGG CTCTACGAGGAGGCCCTGTACACAGTGCTTTACCGCGCGGG < 41bp 0.840969133766482 0.640639103312367 0.89740545 0.5818333 prediction 0.40066006090823 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1389526 chr16:1389529 synonymous SNV . 0 24 hm5C_associated_SNPs_98853 0 0 0 0 2 BAIAP3 chr16:1389497 3'AG 1389497 Downstream 33bp
chr16 1389529 1389529 1 + G A UCEC 1389526 + 1389506 1389546 41 CTCTACGAGGAGGCCCTGTACACGGTGCTTTACCGCGCGGG CTCTACGAGGAGGCCCTGTACACAGTGCTTTACCGCGCGGG < 41bp 0.840969133766482 0.640639103312367 0.89740545 0.5818333 prediction 0.40066006090823 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1389526 chr16:1389529 synonymous SNV . 0 24 hm5C_associated_SNPs_98853 0 0 0 0 2 BAIAP3 chr16:1389604 5'GT 1389604 Upstream 76bp
chr16 90030971 90030971 1 + C T UCEC 90030969 + 90030949 90030989 41 TCTGTGTGCGCCGACTGCTCCGCGGTCTTCCACAGGTGGGT TCTGTGTGCGCCGACTGCTCCGTGGTCTTCCACAGGTGGGT < 41bp 0.826052672748869 0.625723666992588 0.55412096 0.5261923 prediction 0.400658011512562 Functional Loss - DEF8 ENSG00000140995 CDS Human protein_coding chr16:90030969 chr16:90030971 nonsynonymous SNV 0.084 4 23 hm5C_associated_SNPs_98854 0 0 0 0 2 DEF8 chr16:90030874 3'AG 90030874 Downstream 98bp
chr16 90030971 90030971 1 + C T UCEC 90030969 + 90030949 90030989 41 TCTGTGTGCGCCGACTGCTCCGCGGTCTTCCACAGGTGGGT TCTGTGTGCGCCGACTGCTCCGTGGTCTTCCACAGGTGGGT < 41bp 0.826052672748869 0.625723666992588 0.55412096 0.5261923 prediction 0.400658011512562 Functional Loss - DEF8 ENSG00000140995 CDS Human protein_coding chr16:90030969 chr16:90030971 nonsynonymous SNV 0.084 4 23 hm5C_associated_SNPs_98854 0 0 0 0 2 DEF8 chr16:90030983 5'GT 90030983 Upstream 13bp
chr1 113657106 113657106 1 + C T COAD 113657103 + 113657083 113657123 41 GACAGTAACACGAGGTGAAACTGCGGTGTTACAGTGCATAG GACAGTAACACGAGGTGAAACTGTGGTGTTACAGTGCATAG < 41bp 0.794775610134134 0.594448601229987 0.8999158 0.82509947 prediction 0.400654017808293 Functional Loss - LRIG2 ENSG00000198799 CDS Human protein_coding chr1:113657103 chr1:113657106 nonsynonymous SNV 0.945 1 24 hm5C_associated_SNPs_98855 0 0 1 0 1 LRIG2 chr1:113657049 3'AG 113657049 Downstream 58bp
chr1 1420440 1420440 1 + G T UCEC 1420437 + 1420417 1420457 41 GCTGTCGGGGTCTACTCAGCCAAGAATGCGACAGCCGTCAC GCTGTCGGGGTCTACTCAGCCAATAATGCGACAGCCGTCAC < 41bp 0.938119012980717 0.737793396558082 0.43379483 0.8715453 prediction 0.400651232845269 Functional Loss - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1420437 chr1:1420440 nonsynonymous SNV 0.038 5 24 hm5C_associated_SNPs_98858 0 0 1 0 1 ATAD3B chr1:1420396 3'AG 1420396 Downstream 45bp
chr17 46023278 46023278 1 + T C BLCA 46023277 + 46023257 46023297 41 CCTGAGGAGGAGGCTGAGTGCTACTTCCACTCCCGCCCCAA CCTGAGGAGGAGGCTGAGTGCCACTTCCACTCCCGCCCCAA < 41bp 0.70032456046405 0.448107661772647 0.15200022 0.107663214 prediction 0.4006491209281 Functional Loss - PNPO ENSG00000108439 CDS Human protein_coding chr17:46023277 chr17:46023278 nonsynonymous SNV 0.867 4 22 hm5C_associated_SNPs_98859 0 0 1 0 2 PNPO chr17:46023227 3'AG 46023227 Downstream 52bp
chr17 46023278 46023278 1 + T C BLCA 46023277 + 46023257 46023297 41 CCTGAGGAGGAGGCTGAGTGCTACTTCCACTCCCGCCCCAA CCTGAGGAGGAGGCTGAGTGCCACTTCCACTCCCGCCCCAA < 41bp 0.70032456046405 0.448107661772647 0.15200022 0.107663214 prediction 0.4006491209281 Functional Loss - PNPO ENSG00000108439 CDS Human protein_coding chr17:46023277 chr17:46023278 nonsynonymous SNV 0.867 4 22 hm5C_associated_SNPs_98859 0 0 1 0 2 PNPO chr17:46023355 5'GT 46023355 Upstream 78bp
chr8 21956540 21956540 1 + C T GBM 21956537 + 21956517 21956557 41 TTCTTGGGCTGGTTTGATTACTGCGACCACCTCATCACAGA TTCTTGGGCTGGTTTGATTACTGTGACCACCTCATCACAGA < 41bp 0.700317725112265 0.488327302801538 0.08908865 0.037061602 prediction 0.40063545022453 Functional Loss - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21956537 chr8:21956540 synonymous SNV . 0 24 hm5C_associated_SNPs_98864 0 0 1 0 2 FAM160B2 chr8:21956459 3'AG 21956459 Downstream 82bp
chr8 21956540 21956540 1 + C T GBM 21956537 + 21956517 21956557 41 TTCTTGGGCTGGTTTGATTACTGCGACCACCTCATCACAGA TTCTTGGGCTGGTTTGATTACTGTGACCACCTCATCACAGA < 41bp 0.700317725112265 0.488327302801538 0.08908865 0.037061602 prediction 0.40063545022453 Functional Loss - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21956537 chr8:21956540 synonymous SNV . 0 24 hm5C_associated_SNPs_98864 0 0 1 0 2 FAM160B2 chr8:21956567 5'GT 21956567 Upstream 28bp
chr12 120031799 120031799 1 + C T COAD 120031796 + 120031776 120031816 41 CATCGTCTCGTGTTTTTGCCCTGCGTACCCCATCAACATCG CATCGTCTCGTGTTTTTGCCCTGTGTACCCCATCAACATCG < 41bp 0.72150004776114 0.521184357317305 0.1178202 0.07678875 prediction 0.400631380887669 Functional Loss - TMEM233 ENSG00000224982 CDS Human protein_coding chr12:120031796 chr12:120031799 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_98867 0 0 0 0 1 TMEM233 chr12:120031839 5'GT 120031839 Upstream 41bp
chr9 36117066 36117066 1 + G A rs151184551 36117063 + 36117043 36117083 41 GAGTGTGTACCAAGACAGCTCGCGTGTGACCAGGTCCAAGA GAGTGTGTACCAAGACAGCTCGCATGTGACCAGGTCCAAGA < 41bp 0.700312601316168 0.460088918650223 0.10594162 0.023179501 prediction 0.400625202632337 Functional Loss - RECK ENSG00000122707 CDS Human protein_coding chr9:36117063 chr9:36117066 synonymous SNV . 0 24 hm5C_associated_SNPs_98868 0 0 1 0 1 RECK chr9:36116982 3'AG 36116982 Downstream 85bp
chr15 101567891 101567891 1 + C T UCEC 101567888 + 101567868 101567908 41 AGGAGGCCGTGCTGGCAGAGCAGCAGCGCCGCAGCCGGGAC AGGAGGCCGTGCTGGCAGAGCAGTAGCGCCGCAGCCGGGAC < 41bp 0.764758529311666 0.564446633999403 0.41948968 0.39580193 prediction 0.400623790624525 Functional Loss - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101567888 chr15:101567891 stopgain 0.966 0 24 hm5C_associated_SNPs_98869 0 0 0 0 1 LRRK1 chr15:101567843 3'AG 101567843 Downstream 49bp
chr12 109878605 109878605 1 + C T CESC 109878603 + 109878583 109878623 41 ACCTGGTGCAGAAGTACTGCCGCGGGATCACAGCTGAGCGG ACCTGGTGCAGAAGTACTGCCGTGGGATCACAGCTGAGCGG < 41bp 0.856328197241656 0.656016825204141 0.67384213 0.4984692 prediction 0.400622744075029 Functional Loss - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109878603 chr12:109878605 synonymous SNV . 0 23 hm5C_associated_SNPs_98870 0 0 0 0 2 MYO1H chr12:109878549 3'AG 109878549 Downstream 57bp
chr12 109878605 109878605 1 + C T CESC 109878603 + 109878583 109878623 41 ACCTGGTGCAGAAGTACTGCCGCGGGATCACAGCTGAGCGG ACCTGGTGCAGAAGTACTGCCGTGGGATCACAGCTGAGCGG < 41bp 0.856328197241656 0.656016825204141 0.67384213 0.4984692 prediction 0.400622744075029 Functional Loss - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109878603 chr12:109878605 synonymous SNV . 0 23 hm5C_associated_SNPs_98870 0 0 0 0 2 MYO1H chr12:109878632 5'GT 109878632 Upstream 28bp
chr3 45038708 45038708 1 + T C UCEC 45038707 + 45038687 45038727 41 AAAGACCCTCTGCATTAGTCCTCGGGAGCACTGCTGGGTTC AAAGACCCTCTGCATTAGTCCCCGGGAGCACTGCTGGGTTC < 41bp 0.852360037991112 0.652048781376121 0.19999775 0.30424786 prediction 0.400622513229982 Functional Loss - EXOSC7 ENSG00000075914 CDS Human protein_coding chr3:45038707 chr3:45038708 synonymous SNV . 0 22 hm5C_associated_SNPs_98871 0 0 1 0 1 EXOSC7 chr3:45038744 5'GT 45038744 Upstream 37bp
chrX 153416191 153416191 1 + G T LUSC 153416189 + 153416169 153416209 41 GTGTACCACCTCACCAGTGTCTGGATGATCTTTGTGGTCAC GTGTACCACCTCACCAGTGTCTTGATGATCTTTGTGGTCAC < 41bp 0.919420920312886 0.719110480139596 0.19688186 0.10289818 prediction 0.400620880346581 Functional Loss - OPN1LW ENSG00000102076 CDS Human protein_coding chrX:153416189 chrX:153416191 nonsynonymous SNV 0.976 2 23 hm5C_associated_SNPs_98873 0 0 0 0 1 OPN1LW chrX:153416128 3'AG 153416128 Downstream 64bp
chr9 72758652 72758652 1 + G T UCEC 72758649 + 72758629 72758669 41 TTGAAGAGAACCATGTGGTTCAAGAGAAGATCTGGTCTGTG TTGAAGAGAACCATGTGGTTCAATAGAAGATCTGGTCTGTG < 41bp 0.700310316613071 0.31186417497305 0.5114269 0.21031281 prediction 0.400620633226141 Functional Loss - MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72758649 chr9:72758652 stopgain 0.999 1 24 hm5C_associated_SNPs_98874 0 0 0 0 1 MAMDC2 chr9:72758735 5'GT 72758735 Upstream 84bp
chr16 87677942 87677942 1 + C T UCEC 87677940 + 87677920 87677960 41 AGCGTCCCGTATGGCATGGCCGCGGTCATCCGCTCACCCCT AGCGTCCCGTATGGCATGGCCGTGGTCATCCGCTCACCCCT < 41bp 0.841909040073615 0.641600111040395 0.28504795 0.2283752 prediction 0.400617858066441 Functional Loss - JPH3 ENSG00000154118 CDS Human protein_coding chr16:87677940 chr16:87677942 nonsynonymous SNV 0.527 1 23 hm5C_associated_SNPs_98875 0 0 0 0 1 JPH3 chr16:87677864 3'AG 87677864 Downstream 79bp
chr8 87460711 87460711 1 + G A COAD 87460708 + 87460688 87460728 41 AGTTGGGAGGTTCCAATATTCTGGTGACTGAGGAGAACAAA AGTTGGGAGGTTCCAATATTCTGATGACTGAGGAGAACAAA < 41bp 0.773103759630036 0.57279569472859 0.5547234 0.34284502 prediction 0.400616129802892 Functional Loss - WWP1 ENSG00000123124 CDS Human protein_coding chr8:87460708 chr8:87460711 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_98876 0 0 0 0 1 WWP1 chr8:87460742 5'GT 87460742 Upstream 32bp
chr17 74075629 74075629 1 + C T LUSC 74075626 + 74075606 74075646 41 GTGGATGTGCGGGTGTTTGTCTCCAACGTGTTTAATGTGGT GTGGATGTGCGGGTGTTTGTCTCTAACGTGTTTAATGTGGT < 41bp 0.777967053302179 0.577660652315716 0.9622383 0.9322481 prediction 0.400612801972926 Functional Loss - ZACN ENSG00000186919 CDS Human protein_coding chr17:74075626 chr17:74075629 synonymous SNV . 0 24 hm5C_associated_SNPs_98878 0 0 0 0 1 ZACN chr17:74075644 5'GT 74075644 Upstream 16bp
chr6 16247183 16247183 1 + G A BLCA 16247180 + 16247160 16247200 41 GGCACGTTTGAGATGGCAGCCGTGATGTCACAGGTGAGGCG GGCACGTTTGAGATGGCAGCCGTAATGTCACAGGTGAGGCG < 41bp 0.700305967027188 0.450398181344 0.12966916 0.07488194 prediction 0.400611934054377 Functional Loss - GMPR ENSG00000137198 CDS Human protein_coding chr6:16247180 chr6:16247183 synonymous SNV . 0 24 hm5C_associated_SNPs_98879 0 0 0 0 1 GMPR chr6:16247192 5'GT 16247192 Upstream 10bp
chr8 11629028 11629028 1 + G A SKCM 11629025 + 11629005 11629045 41 TTTGTGGGTCAGCAGGTGGTCAAGACAGGGGGCAGCAGTAA TTTGTGGGTCAGCAGGTGGTCAAAACAGGGGGCAGCAGTAA < 41bp 0.785078249871773 0.584778289742872 0.906713 0.8605394 prediction 0.400599920257803 Functional Loss - NEIL2 ENSG00000154328 CDS Human protein_coding chr8:11629025 chr8:11629028 synonymous SNV . 0 24 hm5C_associated_SNPs_98882 0 0 1 0 3 NEIL2 chr8:11628955 3'AG 11628955 Downstream 74bp
chr8 11629028 11629028 1 + G A SKCM 11629025 + 11629005 11629045 41 TTTGTGGGTCAGCAGGTGGTCAAGACAGGGGGCAGCAGTAA TTTGTGGGTCAGCAGGTGGTCAAAACAGGGGGCAGCAGTAA < 41bp 0.785078249871773 0.584778289742872 0.906713 0.8605394 prediction 0.400599920257803 Functional Loss - NEIL2 ENSG00000154328 CDS Human protein_coding chr8:11629025 chr8:11629028 synonymous SNV . 0 24 hm5C_associated_SNPs_98882 0 0 1 0 3 NEIL2 chr8:11629094 5'GT 11629094 Upstream 67bp
chr8 11629028 11629028 1 + G A SKCM 11629025 + 11629005 11629045 41 TTTGTGGGTCAGCAGGTGGTCAAGACAGGGGGCAGCAGTAA TTTGTGGGTCAGCAGGTGGTCAAAACAGGGGGCAGCAGTAA < 41bp 0.785078249871773 0.584778289742872 0.906713 0.8605394 prediction 0.400599920257803 Functional Loss - NEIL2 ENSG00000154328 CDS Human protein_coding chr8:11629025 chr8:11629028 synonymous SNV . 0 24 hm5C_associated_SNPs_98882 0 0 1 0 3 NEIL2 chr8:11629099 5'GT 11629099 Upstream 72bp
chr1 197889116 197889116 1 + C T SKCM 197889114 + 197889094 197889134 41 CTTTGCAGGGCATGCCCCCGCTCAGCCCGGAGAAGCCCGCC CTTTGCAGGGCATGCCCCCGCTTAGCCCGGAGAAGCCCGCC < 41bp 0.860382666631048 0.66008274823896 0.13662574 0.06386837 prediction 0.400599836784176 Functional Loss - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197889114 chr1:197889116 synonymous SNV . 0 23 hm5C_associated_SNPs_98883 0 0 0 0 1 LHX9 chr1:197889102 3'AG 197889102 Downstream 15bp
chr11 62476249 62476249 1 + G T LUAD 62476245 + 62476225 62476265 41 CCCACTTCGGAGAACCCCTTCCGGGAGAAGAAGTTCTTCTG CCCACTTCGGAGAACCCCTTCCGGTAGAAGAAGTTCTTCTG < 41bp 0.70437311409946 0.504075815419231 0.9481826 0.8299248 prediction 0.400594597360457 Functional Loss - GNG3 ENSG00000162188 CDS Human protein_coding chr11:62476245 chr11:62476249 stopgain 1.000 1 25 hm5C_associated_SNPs_98886 0 0 0 0 1 GNG3 chr11:62476150 3'AG 62476150 Downstream 100bp
chr19 52869019 52869019 1 + G T LUAD 52869016 + 52868996 52869036 41 AAAATCAACTTGGATTAACCCTTGAGGCACATCTGTCTGAA AAAATCAACTTGGATTAACCCTTTAGGCACATCTGTCTGAA < 41bp 0.70029674370688 0.319726621977251 0.14110523 0.083886504 prediction 0.400593487413759 Functional Loss - ZNF610 ENSG00000167554 CDS Human protein_coding chr19:52869016 chr19:52869019 stopgain 0.001 0 24 hm5C_associated_SNPs_98888 0 0 0 0 1 ZNF610 chr19:52868951 3'AG 52868951 Downstream 69bp
chr2 200820959 200820959 1 + G T UCEC 200820955 + 200820935 200820975 41 GTTCAGCATCACAGAGTTCTCCGAGGGAGCGAAGCAGGTTT GTTCAGCATCACAGAGTTCTCCGATGGAGCGAAGCAGGTTT < 41bp 0.711908040436928 0.511615176179831 0.9239882 0.55708617 prediction 0.400585728514193 Functional Loss - MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200820955 chr2:200820959 nonsynonymous SNV 0.825 0 25 hm5C_associated_SNPs_98892 0 0 0 0 1 MAIP1 chr2:200820971 5'GT 200820971 Upstream 13bp
chr10 72636413 72636413 1 + G T STAD 72636411 + 72636391 72636431 41 GAATCCTAAAGCGAAGACCACAGGAATGGTAGGGACACTTG GAATCCTAAAGCGAAGACCACATGAATGGTAGGGACACTTG < 41bp 0.700290810299198 0.357747519672634 0.39587998 0.1509274 prediction 0.400581620598395 Functional Loss - SGPL1 ENSG00000166224 CDS Human protein_coding chr10:72636411 chr10:72636413 stopgain 1.000 1 23 hm5C_associated_SNPs_98894 0 0 0 0 1 SGPL1 chr10:72636418 5'GT 72636418 Upstream 6bp
chr1 154960626 154960626 1 + C T UCEC 154960623 + 154960603 154960643 41 CCTTCTTTCTGTGCCGGACACTGCGCTCCCTAGGGGTCCAG CCTTCTTTCTGTGCCGGACACTGTGCTCCCTAGGGGTCCAG < 41bp 0.78750051793049 0.587210600517547 0.11182329 0.11807451 prediction 0.400579834825887 Functional Loss - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154960623 chr1:154960626 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_98895 0 0 1 0 1 FLAD1 chr1:154960581 3'AG 154960581 Downstream 46bp
chr6 37358613 37358613 1 + G A SKCM 37358610 + 37358590 37358630 41 TCTGGAGGATTCTCTCTAGCCGTGACTCCGCTGCTCTGAAG TCTGGAGGATTCTCTCTAGCCGTAACTCCGCTGCTCTGAAG < 41bp 0.809673987450026 0.609384484157479 0.6391934 0.33735603 prediction 0.400579006585094 Functional Loss - RNF8 ENSG00000112130 CDS Human protein_coding chr6:37358610 chr6:37358613 synonymous SNV . 0 24 hm5C_associated_SNPs_98898 0 0 1 0 1 RNF8 chr6:37358518 3'AG 37358518 Downstream 96bp
chrX 123034511 123034511 1 + A C rs5956583 123034510 + 123034490 123034530 41 ATGCTCAGAAAGACAGTATGCAAGATGAGTCAAGTCAGACT ATGCTCAGAAAGACAGTATGCCAGATGAGTCAAGTCAGACT < 41bp 0.700288495895211 0.445556396958455 0.3959135 0.5369624 prediction 0.400576991790423 Functional Loss - XIAP ENSG00000101966 CDS Human protein_coding chrX:123034510 chrX:123034511 nonsynonymous SNV 0.626 1 22 hm5C_associated_SNPs_98900 2 0 1 0 1 XIAP chrX:123034543 5'GT 123034543 Upstream 33bp
chrX 2928125 2928125 1 + C T rs79487908 2928123 + 2928103 2928143 41 GAGTGAGGCTTACCCAGCATCTCGCAGCTGCTTCCATGTGC GAGTGAGGCTTACCCAGCATCTTGCAGCTGCTTCCATGTGC < 41bp 0.700285575906345 0.409167123152388 0.26794845 0.21897751 prediction 0.40057115181269 Functional Loss - ARSH ENSG00000205667 CDS Human protein_coding chrX:2928123 chrX:2928125 synonymous SNV . 0 23 hm5C_associated_SNPs_98905 0 0 0 0 2 ARSH chrX:2928071 3'AG 2928071 Downstream 55bp
chrX 2928125 2928125 1 + C T rs79487908 2928123 + 2928103 2928143 41 GAGTGAGGCTTACCCAGCATCTCGCAGCTGCTTCCATGTGC GAGTGAGGCTTACCCAGCATCTTGCAGCTGCTTCCATGTGC < 41bp 0.700285575906345 0.409167123152388 0.26794845 0.21897751 prediction 0.40057115181269 Functional Loss - ARSH ENSG00000205667 CDS Human protein_coding chrX:2928123 chrX:2928125 synonymous SNV . 0 23 hm5C_associated_SNPs_98905 0 0 0 0 2 ARSH chrX:2928192 5'GT 2928192 Upstream 68bp
chrX 2928126 2928126 1 + G A COAD 2928123 + 2928103 2928143 41 GAGTGAGGCTTACCCAGCATCTCGCAGCTGCTTCCATGTGC GAGTGAGGCTTACCCAGCATCTCACAGCTGCTTCCATGTGC < 41bp 0.700285575906345 0.442893777710485 0.26794845 0.17148721 prediction 0.40057115181269 Functional Loss - ARSH ENSG00000205667 CDS Human protein_coding chrX:2928123 chrX:2928126 nonsynonymous SNV 0.001 4 24 hm5C_associated_SNPs_98906 0 0 0 0 2 ARSH chrX:2928071 3'AG 2928071 Downstream 56bp
chrX 2928126 2928126 1 + G A COAD 2928123 + 2928103 2928143 41 GAGTGAGGCTTACCCAGCATCTCGCAGCTGCTTCCATGTGC GAGTGAGGCTTACCCAGCATCTCACAGCTGCTTCCATGTGC < 41bp 0.700285575906345 0.442893777710485 0.26794845 0.17148721 prediction 0.40057115181269 Functional Loss - ARSH ENSG00000205667 CDS Human protein_coding chrX:2928123 chrX:2928126 nonsynonymous SNV 0.001 4 24 hm5C_associated_SNPs_98906 0 0 0 0 2 ARSH chrX:2928192 5'GT 2928192 Upstream 67bp
chr10 98079147 98079147 1 + G A BLCA 98079144 + 98079124 98079164 41 AACAACTGTAACCAGATATTCACGGTAACGGGACTTTACAT AACAACTGTAACCAGATATTCACAGTAACGGGACTTTACAT < 41bp 0.799628846258305 0.599346721410015 0.76328886 0.16440368 prediction 0.400564249696581 Functional Loss - DNTT ENSG00000107447 CDS Human protein_coding chr10:98079144 chr10:98079147 synonymous SNV . 0 24 hm5C_associated_SNPs_98911 0 0 0 0 1 DNTT chr10:98079147 5'GT 98079147 Upstream 1bp
chr9 96415578 96415578 1 + C T COAD 96415575 + 96415555 96415595 41 GTGACCAAGTACTGCCTAATCTGCGTGAAGGACAGTTACAC GTGACCAAGTACTGCCTAATCTGTGTGAAGGACAGTTACAC < 41bp 0.788708959360948 0.588429811332657 0.21902695 0.13218224 prediction 0.400558296056581 Functional Loss - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96415575 chr9:96415578 synonymous SNV . 0 24 hm5C_associated_SNPs_98912 0 0 1 0 1 PHF2 chr9:96415647 5'GT 96415647 Upstream 70bp
chr14 56757161 56757161 1 + A C STAD 56757157 + 56757137 56757177 41 TGCGAGAAACCAGGTCGGCCCAGCAACGAGGAAAGCTGGTG TGCGAGAAACCAGGTCGGCCCAGCCACGAGGAAAGCTGGTG < 41bp 0.700274773065332 0.278042981369185 0.22392523 0.2705655 prediction 0.400549546130665 Functional Loss - PELI2 ENSG00000139946 CDS Human protein_coding chr14:56757157 chr14:56757161 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_98915 0 0 0 0 1 PELI2 chr14:56757174 5'GT 56757174 Upstream 14bp
chr9 133491878 133491878 1 + G T UCEC 133491874 + 133491854 133491894 41 AAAGTGGGTCTGGTCATCGGCAGAGGAGGGGAAACAATCAA AAAGTGGGTCTGGTCATCGGCAGATGAGGGGAAACAATCAA < 41bp 0.726029064220985 0.525755192185336 0.9076128 0.88680464 prediction 0.400547744071299 Functional Loss - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133491874 chr9:133491878 stopgain 1.000 1 25 hm5C_associated_SNPs_98916 0 0 1 0 1 FUBP3 chr9:133491904 5'GT 133491904 Upstream 27bp
chr20 43559110 43559110 1 + G T GBM 43559108 + 43559088 43559128 41 GTCTTGCTTTTAGGTGATGACAGAGGGTGGCCACAGCAAGG GTCTTGCTTTTAGGTGATGACATAGGGTGGCCACAGCAAGG < 41bp 0.700273182354662 0.351495900294144 0.44194144 0.23115668 prediction 0.400546364709323 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43559108 chr20:43559110 stopgain 1.000 1 23 hm5C_associated_SNPs_98917 0 0 0 0 1 PABPC1L chr20:43559101 3'AG 43559101 Downstream 10bp
chr19 43859874 43859874 1 + A C SKCM 43859873 + 43859853 43859893 41 AGGCTGTCTGGAGGGGACAACAGAAGAGATCTGCCCCAAGG AGGCTGTCTGGAGGGGACAACCGAAGAGATCTGCCCCAAGG < 41bp 0.862636494750225 0.662364162230305 0.39858007 0.32698673 prediction 0.40054466503984 Functional Loss - CD177 ENSG00000204936 CDS Human protein_coding chr19:43859873 chr19:43859874 synonymous SNV . 0 22 hm5C_associated_SNPs_98918 0 0 0 0 2 CD177 chr19:43859813 3'AG 43859813 Downstream 62bp
chr19 43859874 43859874 1 + A C SKCM 43859873 + 43859853 43859893 41 AGGCTGTCTGGAGGGGACAACAGAAGAGATCTGCCCCAAGG AGGCTGTCTGGAGGGGACAACCGAAGAGATCTGCCCCAAGG < 41bp 0.862636494750225 0.662364162230305 0.39858007 0.32698673 prediction 0.40054466503984 Functional Loss - CD177 ENSG00000204936 CDS Human protein_coding chr19:43859873 chr19:43859874 synonymous SNV . 0 22 hm5C_associated_SNPs_98918 0 0 0 0 2 CD177 chr19:43859935 5'GT 43859935 Upstream 62bp
chr14 59014576 59014576 1 + G A UCEC 59014573 + 59014553 59014593 41 TGATGCTGCCGTCAGTGAACCTCGAGGACTGCTCTCAGTCT TGATGCTGCCGTCAGTGAACCTCAAGGACTGCTCTCAGTCT < 41bp 0.818253665488542 0.617981806339417 0.53627324 0.28099334 prediction 0.400543718298251 Functional Loss - KIAA0586 ENSG00000100578 CDS Human protein_coding chr14:59014573 chr14:59014576 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_98919 0 0 1 0 1 KIAA0586 chr14:59014499 3'AG 59014499 Downstream 78bp
chr16 57732035 57732035 1 + G T UCEC 57732031 + 57732011 57732051 41 AGACCTGGAGAAGAAGCTGTCAGAGATCCAGATCACTGTCT AGACCTGGAGAAGAAGCTGTCAGATATCCAGATCACTGTCT < 41bp 0.700270084361523 0.48800717550824 0.9031178 0.66590077 prediction 0.400540168723045 Functional Loss - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57732031 chr16:57732035 nonsynonymous SNV 0.038 0 25 hm5C_associated_SNPs_98922 0 0 0 0 1 DRC7 chr16:57732064 5'GT 57732064 Upstream 30bp
chr12 122441615 122441615 1 + C T UCEC 122441613 + 122441593 122441633 41 GAAATCACTGCAGAAATATTCGCGACTGAAATTCTTGGCTT GAAATCACTGCAGAAATATTCGTGACTGAAATTCTTGGCTT < 41bp 0.864038046698679 0.663769513465851 0.64422935 0.8031782 prediction 0.400537066465656 Functional Loss - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122441613 chr12:122441615 nonsynonymous SNV 0.903 0 23 hm5C_associated_SNPs_98925 0 0 0 0 1 WDR66 chr12:122441558 3'AG 122441558 Downstream 58bp
chr6 7862665 7862665 1 + C T UCEC 7862662 + 7862642 7862682 41 CCACCAGGTCAGCCTCCAGCCGGCGCCGACAACAGAGTCGT CCACCAGGTCAGCCTCCAGCCGGTGCCGACAACAGAGTCGT < 41bp 0.744579755665362 0.544311263666529 0.895598 0.6245031 prediction 0.400536983997666 Functional Loss - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7862662 chr6:7862665 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_98926 0 0 0 0 1 BMP6 chr6:7862731 5'GT 7862731 Upstream 67bp
chr13 108959235 108959235 1 + A C UCEC 108959231 + 108959211 108959251 41 TGCAATACCAAGAGAAAATGCACAAATATCACTGGATGGAG TGCAATACCAAGAGAAAATGCACACATATCACTGGATGGAG < 41bp 0.700263820888455 0.297850405979809 0.5091705 0.3796166 prediction 0.400527641776911 Functional Loss - TNFSF13B ENSG00000102524 CDS Human protein_coding chr13:108959231 chr13:108959235 nonsynonymous SNV 0.175 1 25 hm5C_associated_SNPs_98933 0 0 0 0 1 TNFSF13B chr13:108959174 3'AG 108959174 Downstream 62bp
chr19 17598335 17598335 1 + G T SKCM 17598333 + 17598313 17598353 41 AAGGCTGCCATTGTCGTGCACAGCAGGTGAGGGGCCCACAG AAGGCTGCCATTGTCGTGCACATCAGGTGAGGGGCCCACAG < 41bp 0.700263198588546 0.346788260206834 0.8329952 0.15309843 prediction 0.400526397177092 Functional Loss - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17598333 chr19:17598335 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_98934 0 0 0 0 2 SLC27A1 chr19:17598269 3'AG 17598269 Downstream 67bp
chr19 17598335 17598335 1 + G T SKCM 17598333 + 17598313 17598353 41 AAGGCTGCCATTGTCGTGCACAGCAGGTGAGGGGCCCACAG AAGGCTGCCATTGTCGTGCACATCAGGTGAGGGGCCCACAG < 41bp 0.700263198588546 0.346788260206834 0.8329952 0.15309843 prediction 0.400526397177092 Functional Loss - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17598333 chr19:17598335 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_98934 0 0 0 0 2 SLC27A1 chr19:17598338 5'GT 17598338 Upstream 4bp
chr19 49912528 49912528 1 + G C KIRC 49912525 + 49912505 49912545 41 CCATCGCTGGGCTTGGAGATCGAGGCCATTCGACAGGTGGG CCATCGCTGGGCTTGGAGATCGACGCCATTCGACAGGTGGG < 41bp 0.739710934018871 0.539451985750987 0.8958725 0.29616204 prediction 0.400517896535768 Functional Loss - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49912525 chr19:49912528 nonsynonymous SNV 0.446 1 24 hm5C_associated_SNPs_98937 0 0 0 0 2 CCDC155 chr19:49912453 3'AG 49912453 Downstream 76bp
chr19 49912528 49912528 1 + G C KIRC 49912525 + 49912505 49912545 41 CCATCGCTGGGCTTGGAGATCGAGGCCATTCGACAGGTGGG CCATCGCTGGGCTTGGAGATCGACGCCATTCGACAGGTGGG < 41bp 0.739710934018871 0.539451985750987 0.8958725 0.29616204 prediction 0.400517896535768 Functional Loss - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49912525 chr19:49912528 nonsynonymous SNV 0.446 1 24 hm5C_associated_SNPs_98937 0 0 0 0 2 CCDC155 chr19:49912540 5'GT 49912540 Upstream 13bp
chr3 40528333 40528333 1 + C T PAAD 40528330 + 40528310 40528350 41 GACTGAGAATGAGGAAAAAACTGCACAGCTAAACATTTCTA GACTGAGAATGAGGAAAAAACTGTACAGCTAAACATTTCTA < 41bp 0.745772871122527 0.545516157723758 0.059725672 0.044798672 prediction 0.400513426797538 Functional Loss - ZNF619 ENSG00000177873 CDS Human protein_coding chr3:40528330 chr3:40528333 nonsynonymous SNV 0.012 0 24 hm5C_associated_SNPs_98938 0 0 1 0 1 ZNF619 chr3:40528297 3'AG 40528297 Downstream 37bp
chr11 73102216 73102216 1 + C T rs146023545 73102214 + 73102194 73102234 41 TTGGGCCTTGGGGGGTTCCCCGCGTTCCATGTCAACCATGT TTGGGCCTTGGGGGGTTCCCCGTGTTCCATGTCAACCATGT < 41bp 0.700254122957615 0.428440629643893 0.75264895 0.47386557 prediction 0.40050824591523 Functional Loss - RELT ENSG00000054967 CDS Human protein_coding chr11:73102214 chr11:73102216 synonymous SNV . 0 23 hm5C_associated_SNPs_98940 0 0 1 0 2 RELT chr11:73102189 3'AG 73102189 Downstream 28bp
chr11 73102216 73102216 1 + C T rs146023545 73102214 + 73102194 73102234 41 TTGGGCCTTGGGGGGTTCCCCGCGTTCCATGTCAACCATGT TTGGGCCTTGGGGGGTTCCCCGTGTTCCATGTCAACCATGT < 41bp 0.700254122957615 0.428440629643893 0.75264895 0.47386557 prediction 0.40050824591523 Functional Loss - RELT ENSG00000054967 CDS Human protein_coding chr11:73102214 chr11:73102216 synonymous SNV . 0 23 hm5C_associated_SNPs_98940 0 0 1 0 2 RELT chr11:73102268 5'GT 73102268 Upstream 53bp
chr11 73102217 73102217 1 + G A UCEC 73102214 + 73102194 73102234 41 TTGGGCCTTGGGGGGTTCCCCGCGTTCCATGTCAACCATGT TTGGGCCTTGGGGGGTTCCCCGCATTCCATGTCAACCATGT < 41bp 0.700254122957615 0.440905706835417 0.75264895 0.289689 prediction 0.40050824591523 Functional Loss - RELT ENSG00000054967 CDS Human protein_coding chr11:73102214 chr11:73102217 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_98941 0 0 1 0 2 RELT chr11:73102189 3'AG 73102189 Downstream 29bp
chr11 73102217 73102217 1 + G A UCEC 73102214 + 73102194 73102234 41 TTGGGCCTTGGGGGGTTCCCCGCGTTCCATGTCAACCATGT TTGGGCCTTGGGGGGTTCCCCGCATTCCATGTCAACCATGT < 41bp 0.700254122957615 0.440905706835417 0.75264895 0.289689 prediction 0.40050824591523 Functional Loss - RELT ENSG00000054967 CDS Human protein_coding chr11:73102214 chr11:73102217 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_98941 0 0 1 0 2 RELT chr11:73102268 5'GT 73102268 Upstream 52bp
chr17 61766965 61766965 1 + C T rs77148458 61766962 + 61766942 61766982 41 AACTTGTTCACCCTGGTGCCCTCCAGCCGCTCCCTGAGCAC AACTTGTTCACCCTGGTGCCCTCTAGCCGCTCCCTGAGCAC < 41bp 0.700253273985344 0.461192364447175 0.94146276 0.87352645 prediction 0.400506547970689 Functional Loss - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61766962 chr17:61766965 synonymous SNV . 0 24 hm5C_associated_SNPs_98942 0 0 1 0 1 MAP3K3 chr17:61766904 3'AG 61766904 Downstream 62bp
chr17 61766963 61766963 1 + T C LIHC 61766962 + 61766942 61766982 41 AACTTGTTCACCCTGGTGCCCTCCAGCCGCTCCCTGAGCAC AACTTGTTCACCCTGGTGCCCCCCAGCCGCTCCCTGAGCAC < 41bp 0.700253273985344 0.406741205702656 0.94146276 0.012520969 prediction 0.400506547970689 Functional Loss - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61766962 chr17:61766963 nonsynonymous SNV 0.994 2 22 hm5C_associated_SNPs_98943 0 0 1 0 1 MAP3K3 chr17:61766904 3'AG 61766904 Downstream 60bp
chr20 31878893 31878893 1 + C T GBM 31878890 + 31878870 31878910 41 GTGCCACCAGCCATGGGAGCCTGCGCATCCAACTGCTGCAT GTGCCACCAGCCATGGGAGCCTGTGCATCCAACTGCTGCAT < 41bp 0.734726096819859 0.534474285092549 0.15268993 0.115391105 prediction 0.400503623454619 Functional Loss - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31878890 chr20:31878893 nonsynonymous SNV 0.318 3 24 hm5C_associated_SNPs_98944 0 0 0 0 1 BPIFB1 chr20:31878912 5'GT 31878912 Upstream 20bp
chr6 126080351 126080351 1 + C T SKCM 126080348 + 126080328 126080368 41 GAAGTTGCGCGGTACCTGAGCTCCGTGGAAGGCCTGGACTC GAAGTTGCGCGGTACCTGAGCTCTGTGGAAGGCCTGGACTC < 41bp 0.79258739720938 0.592337014955315 0.32261574 0.20785794 prediction 0.400500764508128 Functional Loss - HEY2 ENSG00000135547 CDS Human protein_coding chr6:126080348 chr6:126080351 synonymous SNV . 0 24 hm5C_associated_SNPs_98945 0 0 1 0 1 HEY2 chr6:126080263 3'AG 126080263 Downstream 89bp
chr4 128739562 128739562 1 + G A LGG 128739559 + 128739539 128739579 41 AGAAGAGGAAATTGATCATACAGGAGCCAAAACAAAGGTTT AGAAGAGGAAATTGATCATACAGAAGCCAAAACAAAGGTTT < 41bp 0.799819512474189 0.599569298824963 0.2008861 0.0715974 prediction 0.400500427298452 Functional Loss - HSPA4L ENSG00000164070 CDS Human protein_coding chr4:128739559 chr4:128739562 nonsynonymous SNV 0.972 0 24 hm5C_associated_SNPs_98946 0 0 1 0 2 HSPA4L chr4:128739480 3'AG 128739480 Downstream 83bp
chr4 128739562 128739562 1 + G A LGG 128739559 + 128739539 128739579 41 AGAAGAGGAAATTGATCATACAGGAGCCAAAACAAAGGTTT AGAAGAGGAAATTGATCATACAGAAGCCAAAACAAAGGTTT < 41bp 0.799819512474189 0.599569298824963 0.2008861 0.0715974 prediction 0.400500427298452 Functional Loss - HSPA4L ENSG00000164070 CDS Human protein_coding chr4:128739559 chr4:128739562 nonsynonymous SNV 0.972 0 24 hm5C_associated_SNPs_98946 0 0 1 0 2 HSPA4L chr4:128739575 5'GT 128739575 Upstream 14bp
chr5 23518034 23518034 1 + C T SKCM 23518031 + 23518011 23518051 41 TAAGAGTGGAACAGCGTAAACACCAGAAGGTAAGTATTTCC TAAGAGTGGAACAGCGTAAACACTAGAAGGTAAGTATTTCC < 41bp 0.761680952183172 0.561433107656261 0.1253056 0.10026398 prediction 0.400495689053822 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23518031 chr5:23518034 stopgain 0.752 0 24 hm5C_associated_SNPs_98948 0 0 0 0 2 PRDM9 chr5:23517990 3'AG 23517990 Downstream 45bp
chr5 23518034 23518034 1 + C T SKCM 23518031 + 23518011 23518051 41 TAAGAGTGGAACAGCGTAAACACCAGAAGGTAAGTATTTCC TAAGAGTGGAACAGCGTAAACACTAGAAGGTAAGTATTTCC < 41bp 0.761680952183172 0.561433107656261 0.1253056 0.10026398 prediction 0.400495689053822 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23518031 chr5:23518034 stopgain 0.752 0 24 hm5C_associated_SNPs_98948 0 0 0 0 2 PRDM9 chr5:23518039 5'GT 23518039 Upstream 6bp
chr6 25665243 25665243 1 + A C LUSC 25665242 + 25665222 25665262 41 CGGGAAAACCCACTGGACAGCAGCGTGGAGTTTATGCAGGT CGGGAAAACCCACTGGACAGCCGCGTGGAGTTTATGCAGGT < 41bp 0.700246552849677 0.431814468719455 0.3296641 0.3106106 prediction 0.400493105699353 Functional Loss - SCGN ENSG00000079689 CDS Human protein_coding chr6:25665242 chr6:25665243 nonsynonymous SNV 0.961 4 22 hm5C_associated_SNPs_98951 0 0 1 0 2 SCGN chr6:25665171 3'AG 25665171 Downstream 73bp
chr6 25665243 25665243 1 + A C LUSC 25665242 + 25665222 25665262 41 CGGGAAAACCCACTGGACAGCAGCGTGGAGTTTATGCAGGT CGGGAAAACCCACTGGACAGCCGCGTGGAGTTTATGCAGGT < 41bp 0.700246552849677 0.431814468719455 0.3296641 0.3106106 prediction 0.400493105699353 Functional Loss - SCGN ENSG00000079689 CDS Human protein_coding chr6:25665242 chr6:25665243 nonsynonymous SNV 0.961 4 22 hm5C_associated_SNPs_98951 0 0 1 0 2 SCGN chr6:25665260 5'GT 25665260 Upstream 18bp
chr6 25665245 25665245 1 + C T STAD 25665242 + 25665222 25665262 41 CGGGAAAACCCACTGGACAGCAGCGTGGAGTTTATGCAGGT CGGGAAAACCCACTGGACAGCAGTGTGGAGTTTATGCAGGT < 41bp 0.700246552849677 0.484344365576842 0.3296641 0.3519585 prediction 0.400493105699353 Functional Loss - SCGN ENSG00000079689 CDS Human protein_coding chr6:25665242 chr6:25665245 synonymous SNV . 0 24 hm5C_associated_SNPs_98952 0 0 1 0 2 SCGN chr6:25665171 3'AG 25665171 Downstream 75bp
chr6 25665245 25665245 1 + C T STAD 25665242 + 25665222 25665262 41 CGGGAAAACCCACTGGACAGCAGCGTGGAGTTTATGCAGGT CGGGAAAACCCACTGGACAGCAGTGTGGAGTTTATGCAGGT < 41bp 0.700246552849677 0.484344365576842 0.3296641 0.3519585 prediction 0.400493105699353 Functional Loss - SCGN ENSG00000079689 CDS Human protein_coding chr6:25665242 chr6:25665245 synonymous SNV . 0 24 hm5C_associated_SNPs_98952 0 0 1 0 2 SCGN chr6:25665260 5'GT 25665260 Upstream 16bp
chr9 141070111 141070111 1 + T C ACC 141070110 + 141070090 141070130 41 GGAGCCGGGCACCATGGACTCTGTGCGCTCGGGGCCCTTCG GGAGCCGGGCACCATGGACTCCGTGCGCTCGGGGCCCTTCG < 41bp 0.75356210002745 0.553318516885342 0.36080787 0.34634936 prediction 0.400487166284218 Functional Loss - TUBBP5 ENSG00000159247 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:141070110 chr9:141070111 . . 0 22 hm5C_associated_SNPs_98956 0 0 0 0 1 TUBBP5 chr9:141070053 3'AG 141070053 Downstream 59bp
chr9 123914850 123914850 1 + C T COAD 123914847 + 123914827 123914867 41 GGTGGATGAGAGCATCCAAGCGGCAGTCGGAGAAAGAAATG GGTGGATGAGAGCATCCAAGCGGTAGTCGGAGAAAGAAATG < 41bp 0.700238512407029 0.480016098461613 0.5367847 0.6251912 prediction 0.400477024814058 Functional Loss - CNTRL ENSG00000119397 CDS Human protein_coding chr9:123914847 chr9:123914850 stopgain 0.547 0 24 hm5C_associated_SNPs_98961 0 0 1 0 1 CNTRL chr9:123914763 3'AG 123914763 Downstream 88bp
chr11 68700865 68700865 1 + A C rs571142182 68700864 + 68700844 68700884 41 TGACGGTGCAGTACCGCATGCACCAGGCTATCATGCGCTGG TGACGGTGCAGTACCGCATGCCCCAGGCTATCATGCGCTGG < 41bp 0.700237856790474 0.428129420147326 0.12418759 0.07027304 prediction 0.400475713580948 Functional Loss - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68700864 chr11:68700865 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_98962 0 0 0 0 2 IGHMBP2 chr11:68700767 3'AG 68700767 Downstream 99bp
chr11 68700865 68700865 1 + A C rs571142182 68700864 + 68700844 68700884 41 TGACGGTGCAGTACCGCATGCACCAGGCTATCATGCGCTGG TGACGGTGCAGTACCGCATGCCCCAGGCTATCATGCGCTGG < 41bp 0.700237856790474 0.428129420147326 0.12418759 0.07027304 prediction 0.400475713580948 Functional Loss - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68700864 chr11:68700865 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_98962 0 0 0 0 2 IGHMBP2 chr11:68700949 5'GT 68700949 Upstream 85bp
chr16 23672560 23672560 1 + A T rs11545871 23672556 + 23672536 23672576 41 GGAAGATTGTGTGGTCAACGCAGCACAGATTGGTTCCTATG GGAAGATTGTGTGGTCAACGCAGCTCAGATTGGTTCCTATG < 41bp 0.700237719740991 0.35441674439027 0.15404099 0.17206836 prediction 0.400475439481982 Functional Loss - DCTN5 ENSG00000166847 CDS Human protein_coding chr16:23672556 chr16:23672560 synonymous SNV . 0 25 hm5C_associated_SNPs_98963 0 0 1 0 1 DCTN5 chr16:23672602 5'GT 23672602 Upstream 43bp
chr17 37819094 37819094 1 + C T COAD 37819092 + 37819072 37819112 41 TACCTCATCCACCAGAGCCTCGCGGCCACCATGTTTGAATT TACCTCATCCACCAGAGCCTCGTGGCCACCATGTTTGAATT < 41bp 0.700236575702225 0.436644561815475 0.18692514 0.096661955 prediction 0.40047315140445 Functional Loss - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37819092 chr17:37819094 nonsynonymous SNV 0.861 2 23 hm5C_associated_SNPs_98965 0 0 1 0 1 STARD3 chr17:37819057 3'AG 37819057 Downstream 38bp
chr19 13919781 13919781 1 + C T STAD 13919778 + 13919758 13919798 41 ACTACGGGGCCAGCCAGCAGCTGCGCTCCATGTTCAGCAAG ACTACGGGGCCAGCCAGCAGCTGTGCTCCATGTTCAGCAAG < 41bp 0.703466784603595 0.503231387271947 0.1744757 0.10103357 prediction 0.400470794663296 Functional Loss - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13919778 chr19:13919781 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_98967 0 0 0 0 1 ZSWIM4 chr19:13919798 5'GT 13919798 Upstream 18bp
chr17 37865656 37865656 1 + G A BLCA 37865653 + 37865633 37865673 41 TTGTGGAAGGACATCTTCCACAAGAACAACCAGCTGGCTCT TTGTGGAAGGACATCTTCCACAAAAACAACCAGCTGGCTCT < 41bp 0.700232003865203 0.462645050329263 0.11615896 0.047315896 prediction 0.400464007730407 Functional Loss - ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37865653 chr17:37865656 synonymous SNV . 0 24 hm5C_associated_SNPs_98972 0 0 0 0 2 ERBB2 chr17:37865571 3'AG 37865571 Downstream 86bp
chr17 37865656 37865656 1 + G A BLCA 37865653 + 37865633 37865673 41 TTGTGGAAGGACATCTTCCACAAGAACAACCAGCTGGCTCT TTGTGGAAGGACATCTTCCACAAAAACAACCAGCTGGCTCT < 41bp 0.700232003865203 0.462645050329263 0.11615896 0.047315896 prediction 0.400464007730407 Functional Loss - ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37865653 chr17:37865656 synonymous SNV . 0 24 hm5C_associated_SNPs_98972 0 0 0 0 2 ERBB2 chr17:37865705 5'GT 37865705 Upstream 50bp
chr5 68568852 68568852 1 + G A UCEC 68568849 + 68568829 68568869 41 ATTCTTATTTAATCCATGTGCTCGAATTACGGCCACACAGG ATTCTTATTTAATCCATGTGCTCAAATTACGGCCACACAGG < 41bp 0.806697020365895 0.606465222345016 0.05518821 0.0372968 prediction 0.400463596041758 Functional Loss - CDK7 ENSG00000134058 CDS Human protein_coding chr5:68568849 chr5:68568852 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_98973 0 0 0 0 1 CDK7 chr5:68568868 5'GT 68568868 Upstream 17bp
chr1 248039216 248039216 1 + G T HNSC 248039213 + 248039193 248039233 41 TTTCCGCAGTGGATGTAAAGCTGGATCCCGCCACGGCGCAC TTTCCGCAGTGGATGTAAAGCTGTATCCCGCCACGGCGCAC < 41bp 0.939066620030888 0.738834987134832 0.40993005 0.08502421 prediction 0.400463265792111 Functional Loss - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039213 chr1:248039216 nonsynonymous SNV 0.071 4 24 hm5C_associated_SNPs_98974 0 0 0 0 1 TRIM58 chr1:248039202 3'AG 248039202 Downstream 15bp
chr14 73420907 73420907 1 + A T STAD 73420903 + 73420883 73420923 41 CCTGGCATGCTCTGCAGTTTCCGGATCCCTGGTGCCTGGTC CCTGGCATGCTCTGCAGTTTCCGGTTCCCTGGTGCCTGGTC < 41bp 0.907222077356617 0.706993199150595 0.91911846 0.7837193 prediction 0.400457756412045 Functional Loss - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73420903 chr14:73420907 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_98975 0 0 1 0 3 DCAF4 chr14:73420869 3'AG 73420869 Downstream 39bp
chr14 73420907 73420907 1 + A T STAD 73420903 + 73420883 73420923 41 CCTGGCATGCTCTGCAGTTTCCGGATCCCTGGTGCCTGGTC CCTGGCATGCTCTGCAGTTTCCGGTTCCCTGGTGCCTGGTC < 41bp 0.907222077356617 0.706993199150595 0.91911846 0.7837193 prediction 0.400457756412045 Functional Loss - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73420903 chr14:73420907 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_98975 0 0 1 0 3 DCAF4 chr14:73420872 3'AG 73420872 Downstream 36bp
chr14 73420907 73420907 1 + A T STAD 73420903 + 73420883 73420923 41 CCTGGCATGCTCTGCAGTTTCCGGATCCCTGGTGCCTGGTC CCTGGCATGCTCTGCAGTTTCCGGTTCCCTGGTGCCTGGTC < 41bp 0.907222077356617 0.706993199150595 0.91911846 0.7837193 prediction 0.400457756412045 Functional Loss - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73420903 chr14:73420907 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_98975 0 0 1 0 3 DCAF4 chr14:73420970 5'GT 73420970 Upstream 64bp
chr4 129782917 129782917 1 + T C LIHC 129782916 + 129782896 129782936 41 CCTGTGCTTTTGACCGGGGCCTGGAGATGAAGACCATCTTA CCTGTGCTTTTGACCGGGGCCCGGAGATGAAGACCATCTTA < 41bp 0.835014779755867 0.634786293630866 0.70197755 0.86375177 prediction 0.400456972250002 Functional Loss - JADE1 ENSG00000077684 CDS Human protein_coding chr4:129782916 chr4:129782917 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_98976 0 0 1 0 1 JADE1 chr4:129782859 3'AG 129782859 Downstream 59bp
chr4 38907400 38907400 1 + G T HNSC 38907396 + 38907376 38907416 41 TAACAGATGCAGCCACAGATCAGGGCCCTGCAGAAAGCCCA TAACAGATGCAGCCACAGATCAGGTCCCTGCAGAAAGCCCA < 41bp 0.762977389345008 0.562750104175387 0.92959386 0.41427597 prediction 0.400454570339243 Functional Loss - FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38907396 chr4:38907400 nonsynonymous SNV 0.377 0 25 hm5C_associated_SNPs_98977 0 0 1 0 2 FAM114A1 chr4:38907376 3'AG 38907376 Downstream 25bp
chr4 38907400 38907400 1 + G T HNSC 38907396 + 38907376 38907416 41 TAACAGATGCAGCCACAGATCAGGGCCCTGCAGAAAGCCCA TAACAGATGCAGCCACAGATCAGGTCCCTGCAGAAAGCCCA < 41bp 0.762977389345008 0.562750104175387 0.92959386 0.41427597 prediction 0.400454570339243 Functional Loss - FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38907396 chr4:38907400 nonsynonymous SNV 0.377 0 25 hm5C_associated_SNPs_98977 0 0 1 0 2 FAM114A1 chr4:38907482 5'GT 38907482 Upstream 83bp
chr9 132642541 132642541 1 + C T UCEC 132642539 + 132642519 132642559 41 GCAGAAGATCGAAGCCGAGACGCGGGCCGTGTGATCTGCTG GCAGAAGATCGAAGCCGAGACGTGGGCCGTGTGATCTGCTG < 41bp 0.828092703046863 0.627870478109906 0.40847862 0.4022101 prediction 0.400444449873914 Functional Loss - USP20 ENSG00000136878 CDS Human protein_coding chr9:132642539 chr9:132642541 nonsynonymous SNV 0.137 1 23 hm5C_associated_SNPs_98980 0 0 0 0 1 USP20 chr9:132642568 5'GT 132642568 Upstream 28bp
chr2 119727700 119727700 1 + G T ESCA 119727698 + 119727678 119727718 41 GGTGGGGCCCAGTTCTGAATCTGCAGGCGCGGCTCCGGGTC GGTGGGGCCCAGTTCTGAATCTTCAGGCGCGGCTCCGGGTC < 41bp 0.843728662089493 0.643506778596166 0.87252796 0.89159036 prediction 0.400443766986654 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119727698 chr2:119727700 synonymous SNV . 0 23 hm5C_associated_SNPs_98981 0 0 0 0 1 MARCO chr2:119727690 3'AG 119727690 Downstream 11bp
chr20 37255769 37255769 1 + C T rs6015496 37255766 + 37255746 37255786 41 CCCAGGTGGCCGCTGTGTGCCGCCGGCTGGACATCTATGCT CCCAGGTGGCCGCTGTGTGCCGCTGGCTGGACATCTATGCT < 41bp 0.700217944469068 0.477075564498392 0.11776453 0.042122573 prediction 0.400435888938136 Functional Loss - ARHGAP40 ENSG00000124143 CDS Human protein_coding chr20:37255766 chr20:37255769 nonsynonymous SNV 0.984 1 24 hm5C_associated_SNPs_98984 0 0 0 0 1 ARHGAP40 chr20:37255858 5'GT 37255858 Upstream 90bp
chr13 25285467 25285467 1 + G T READ 25285465 + 25285445 25285485 41 TTTGCTTCCAGGGCTCAGTACTGGTTTGTGGCTGTGCCGCA TTTGCTTCCAGGGCTCAGTACTTGTTTGTGGCTGTGCCGCA < 41bp 0.700217123595759 0.342737916988081 0.38522592 0.22966427 prediction 0.400434247191518 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25285465 chr13:25285467 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_98985 0 0 0 0 2 ATP12A chr13:25285456 3'AG 25285456 Downstream 12bp
chr13 25285467 25285467 1 + G T READ 25285465 + 25285445 25285485 41 TTTGCTTCCAGGGCTCAGTACTGGTTTGTGGCTGTGCCGCA TTTGCTTCCAGGGCTCAGTACTTGTTTGTGGCTGTGCCGCA < 41bp 0.700217123595759 0.342737916988081 0.38522592 0.22966427 prediction 0.400434247191518 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25285465 chr13:25285467 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_98985 0 0 0 0 2 ATP12A chr13:25285547 5'GT 25285547 Upstream 81bp
chr9 82323621 82323621 1 + G T UCEC 82323619 + 82323599 82323639 41 CAGCCCCGGAGCGGCCTACGCTGGGCTCCACAACATCTCCC CAGCCCCGGAGCGGCCTACGCTTGGCTCCACAACATCTCCC < 41bp 0.92612112761114 0.725904113161456 0.5243121 0.2615378 prediction 0.400434028899367 Functional Loss - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82323619 chr9:82323621 nonsynonymous SNV 0.334 4 23 hm5C_associated_SNPs_98986 0 0 0 0 1 TLE4 chr9:82323701 5'GT 82323701 Upstream 81bp
chr13 114290351 114290351 1 + G T LUSC 114290349 + 114290329 114290369 41 ATGCGGAGCAGCAGGCCAGCCGGCCACCGCCACCCAACTCA ATGCGGAGCAGCAGGCCAGCCGTCCACCGCCACCCAACTCA < 41bp 0.700215477231855 0.335990474820375 0.3054319 0.1288651 prediction 0.40043095446371 Functional Loss - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114290349 chr13:114290351 synonymous SNV . 0 23 hm5C_associated_SNPs_98987 0 0 1 0 2 TFDP1 chr13:114290292 3'AG 114290292 Downstream 60bp
chr13 114290351 114290351 1 + G T LUSC 114290349 + 114290329 114290369 41 ATGCGGAGCAGCAGGCCAGCCGGCCACCGCCACCCAACTCA ATGCGGAGCAGCAGGCCAGCCGTCCACCGCCACCCAACTCA < 41bp 0.700215477231855 0.335990474820375 0.3054319 0.1288651 prediction 0.40043095446371 Functional Loss - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114290349 chr13:114290351 synonymous SNV . 0 23 hm5C_associated_SNPs_98987 0 0 1 0 2 TFDP1 chr13:114290443 5'GT 114290443 Upstream 93bp
chr17 4487302 4487302 1 + G A rs8068681 4487299 + 4487279 4487319 41 GTAGGACTGGGAGGGGACAGCGCGTAGTCGCAGAGTCAGGG GTAGGACTGGGAGGGGACAGCGCATAGTCGCAGAGTCAGGG < 41bp 0.700215456346665 0.467148072694135 0.18754938 0.22293028 prediction 0.400430912693331 Functional Loss - SMTNL2 ENSG00000188176 UTR5 Human protein_coding chr17:4487299 chr17:4487302 . . 0 24 hm5C_associated_SNPs_98988 0 0 0 0 1 SMTNL2 chr17:4487393 5'GT 4487393 Upstream 92bp
chr11 67047151 67047151 1 + G C HNSC 67047148 + 67047128 67047168 41 AAGGCCACCTGGGGAAGAAGCAGGTGCCTCCGGATCTCTTC AAGGCCACCTGGGGAAGAAGCAGCTGCCTCCGGATCTCTTC < 41bp 0.760232249664297 0.560017714448212 0.92156494 0.85621417 prediction 0.400429070432169 Functional Loss - GRK2 ENSG00000173020 CDS Human protein_coding chr11:67047148 chr11:67047151 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_98991 0 0 1 0 2 GRK2 chr11:67047097 3'AG 67047097 Downstream 55bp
chr11 67047151 67047151 1 + G C HNSC 67047148 + 67047128 67047168 41 AAGGCCACCTGGGGAAGAAGCAGGTGCCTCCGGATCTCTTC AAGGCCACCTGGGGAAGAAGCAGCTGCCTCCGGATCTCTTC < 41bp 0.760232249664297 0.560017714448212 0.92156494 0.85621417 prediction 0.400429070432169 Functional Loss - GRK2 ENSG00000173020 CDS Human protein_coding chr11:67047148 chr11:67047151 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_98991 0 0 1 0 2 GRK2 chr11:67047171 5'GT 67047171 Upstream 21bp
chr19 37464606 37464606 1 + G T rs3816391 37464602 + 37464582 37464622 41 GCGATCTGTGCCCGCTGTGCCTGCGGGGCTGTGGTGGGAGT GCGATCTGTGCCCGCTGTGCCTGCTGGGCTGTGGTGGGAGT < 41bp 0.700214332719957 0.497017216136217 0.18380615 0.08670756 prediction 0.400428665439915 Functional Loss - ZNF568 ENSG00000198453 UTR5 Human protein_coding chr19:37464602 chr19:37464606 . . 0 25 hm5C_associated_SNPs_98992 0 0 0 0 1 ZNF568 chr19:37464655 5'GT 37464655 Upstream 50bp
chr9 124080948 124080948 1 + G A CESC 124080945 + 124080925 124080965 41 TCTGCCTCCCCTCCCCAGGTCTCGGTCCTTCCTGAGGGCGG TCTGCCTCCCCTCCCCAGGTCTCAGTCCTTCCTGAGGGCGG < 41bp 0.70021133827401 0.460512224142182 0.17933154 0.091793895 prediction 0.400422676548021 Functional Loss - GSN ENSG00000148180 CDS Human protein_coding chr9:124080945 chr9:124080948 synonymous SNV . 0 24 hm5C_associated_SNPs_98995 0 0 1 0 1 GSN chr9:124080943 3'AG 124080943 Downstream 6bp
chr3 141326576 141326576 1 + G A SKCM 141326573 + 141326553 141326593 41 ACATTCTTGCTGTGGAAAAACTGGAAGAGAGCTCTTTCAAC ACATTCTTGCTGTGGAAAAACTGAAAGAGAGCTCTTTCAAC < 41bp 0.791332750658727 0.591123623925876 0.16403612 0.41920972 prediction 0.400418253465702 Functional Loss - RASA2 ENSG00000155903 CDS Human protein_coding chr3:141326573 chr3:141326576 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_98996 0 0 0 0 2 RASA2 chr3:141326520 3'AG 141326520 Downstream 57bp
chr3 141326576 141326576 1 + G A SKCM 141326573 + 141326553 141326593 41 ACATTCTTGCTGTGGAAAAACTGGAAGAGAGCTCTTTCAAC ACATTCTTGCTGTGGAAAAACTGAAAGAGAGCTCTTTCAAC < 41bp 0.791332750658727 0.591123623925876 0.16403612 0.41920972 prediction 0.400418253465702 Functional Loss - RASA2 ENSG00000155903 CDS Human protein_coding chr3:141326573 chr3:141326576 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_98996 0 0 0 0 2 RASA2 chr3:141326602 5'GT 141326602 Upstream 27bp
chr1 48701532 48701532 1 + G A SKCM 48701529 + 48701509 48701549 41 TCCGCAGGAAGTCAACAGAGCAGGAGCTGATGGTGGTGGGC TCCGCAGGAAGTCAACAGAGCAGAAGCTGATGGTGGTGGGC < 41bp 0.834942961990903 0.634738890014524 0.8841235 0.6762914 prediction 0.400408143952759 Functional Loss - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48701529 chr1:48701532 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_98998 0 0 1 0 1 SLC5A9 chr1:48701551 5'GT 48701551 Upstream 20bp
chr12 113385865 113385865 1 + G T LUSC 113385863 + 113385843 113385883 41 GCTATGACCACCCATGCTTTCTGAGGGGGATGGGGGACCCA GCTATGACCACCCATGCTTTCTTAGGGGGATGGGGGACCCA < 41bp 0.700203929630768 0.340162528538927 0.41407618 0.1830298 prediction 0.400407859261536 Functional Loss - OAS3 ENSG00000111331 CDS Human protein_coding chr12:113385863 chr12:113385865 synonymous SNV . 0 23 hm5C_associated_SNPs_98999 0 0 1 0 1 OAS3 chr12:113385904 5'GT 113385904 Upstream 40bp
chr2 98779420 98779420 1 + C T SKCM 98779417 + 98779397 98779437 41 GTGGCCGAGCCTCCCAAGCCCGACGTGGCCACTGTGGACTG GTGGCCGAGCCTCCCAAGCCCGATGTGGCCACTGTGGACTG < 41bp 0.711497026283757 0.511293195586307 0.25315464 0.19605294 prediction 0.4004076613949 Functional Loss - VWA3B ENSG00000168658 CDS Human protein_coding chr2:98779417 chr2:98779420 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_99000 0 0 0 0 1 VWA3B chr2:98779439 5'GT 98779439 Upstream 20bp
chrX 21627715 21627715 1 + G A SARC 21627712 + 21627692 21627732 41 GGAGGAGGAAGGGGAGGCAGCAGGGGAAAACATAGGAGAAA GGAGGAGGAAGGGGAGGCAGCAGAGGAAAACATAGGAGAAA < 41bp 0.806510974382265 0.606307788562671 0.89926076 0.8843384 prediction 0.400406371639189 Functional Loss - CNKSR2 ENSG00000149970 CDS Human protein_coding chrX:21627712 chrX:21627715 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_99001 0 0 0 0 1 CNKSR2 chrX:21627735 5'GT 21627735 Upstream 21bp
chr17 8192643 8192643 1 - C A UCEC 8192647 - 8192627 8192667 41 TCAGGGCCAGGTTCTCCAAACTGAGAGGCTGAACAGACTCC TCAGGGCCAGGTTCTCCAAACTGATAGGCTGAACAGACTCC < 41bp 0.700202312226134 0.49553831939448 0.93483377 0.8708591 prediction 0.400404624452269 Functional Loss - RANGRF ENSG00000108961 CDS Human protein_coding chr17:8192647 chr17:8192643 nonsynonymous SNV 0.748 1 25 hm5C_associated_SNPs_99003 0 0 0 0 1 RANGRF chr17:8192715 3'AG 8192715 Downstream 73bp
chr2 231281034 231281034 1 + T C STAD 231281033 + 231281013 231281053 41 TGGCAGGTGGGGGCGGCGACCTGAGCACCAGGTGAGTCTTT TGGCAGGTGGGGGCGGCGACCCGAGCACCAGGTGAGTCTTT < 41bp 0.711619114180663 0.511417716984513 0.3173958 0.6906995 prediction 0.4004027943923 Functional Loss - SP100 ENSG00000067066 CDS Human protein_coding chr2:231281033 chr2:231281034 nonsynonymous SNV 0.038 3 22 hm5C_associated_SNPs_99004 0 0 1 0 1 SP100 chr2:231281043 5'GT 231281043 Upstream 10bp
chr5 1212596 1212596 1 + G T SKCM 1212592 + 1212572 1212612 41 CATCCGCGGCATCGAGACCACCGGGAAGGTACTGCATGGGC CATCCGCGGCATCGAGACCACCGGTAAGGTACTGCATGGGC < 41bp 0.74436785035013 0.544168359557911 0.77759504 0.15871942 prediction 0.400398981584437 Functional Loss - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1212592 chr5:1212596 stopgain . 0 25 hm5C_associated_SNPs_99007 0 0 0 0 1 SLC6A19 chr5:1212599 5'GT 1212599 Upstream 4bp
chr17 18832164 18832164 1 + C T UCEC 18832161 + 18832141 18832181 41 TGTTGACAGCTTTCTTGCTGCAGCAGAGACCCTGAAGGAAA TGTTGACAGCTTTCTTGCTGCAGTAGAGACCCTGAAGGAAA < 41bp 0.700199410683053 0.475143950896306 0.2996688 0.18351287 prediction 0.400398821366106 Functional Loss - PRPSAP2 ENSG00000141127 CDS Human protein_coding chr17:18832161 chr17:18832164 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_99008 0 0 1 0 1 PRPSAP2 chr17:18832124 3'AG 18832124 Downstream 41bp
chr12 108604055 108604055 1 + C T BRCA 108604052 + 108604032 108604072 41 ACCGCCTCTCTGTCTACCGGCTGCAGCTGGCCCAGGAGTCG ACCGCCTCTCTGTCTACCGGCTGTAGCTGGCCCAGGAGTCG < 41bp 0.745188302503504 0.54499097369209 0.46454903 0.35464546 prediction 0.400394657622828 Functional Loss - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108604052 chr12:108604055 stopgain 1.000 1 24 hm5C_associated_SNPs_99010 0 0 0 0 1 WSCD2 chr12:108604082 5'GT 108604082 Upstream 28bp
chr9 131890299 131890299 1 + C T UCEC 131890296 + 131890276 131890316 41 GCTGCAAAGCAGAGTGTGTCCTGCGATGAATGCATACCATT GCTGCAAAGCAGAGTGTGTCCTGTGATGAATGCATACCATT < 41bp 0.719561065604153 0.519364120823869 0.10660523 0.20527345 prediction 0.400393889560568 Functional Loss - PTPA ENSG00000119383 CDS Human protein_coding chr9:131890296 chr9:131890299 synonymous SNV . 0 24 hm5C_associated_SNPs_99012 0 0 0 0 2 PTPA chr9:131890243 3'AG 131890243 Downstream 57bp
chr9 131890299 131890299 1 + C T UCEC 131890296 + 131890276 131890316 41 GCTGCAAAGCAGAGTGTGTCCTGCGATGAATGCATACCATT GCTGCAAAGCAGAGTGTGTCCTGTGATGAATGCATACCATT < 41bp 0.719561065604153 0.519364120823869 0.10660523 0.20527345 prediction 0.400393889560568 Functional Loss - PTPA ENSG00000119383 CDS Human protein_coding chr9:131890296 chr9:131890299 synonymous SNV . 0 24 hm5C_associated_SNPs_99012 0 0 0 0 2 PTPA chr9:131890347 5'GT 131890347 Upstream 49bp
chr6 133767844 133767844 1 + G A SKCM 133767841 + 133767821 133767861 41 ATACTCCAGGTAGCTCCAAACTGGAAAAATCTAATCTCAGC ATACTCCAGGTAGCTCCAAACTGAAAAAATCTAATCTCAGC < 41bp 0.780364275699293 0.5801684741132 0.2828981 0.49413297 prediction 0.400391603172185 Functional Loss - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133767841 chr6:133767844 nonsynonymous SNV 0.990 0 24 hm5C_associated_SNPs_99014 0 0 1 0 2 EYA4 chr6:133767768 3'AG 133767768 Downstream 77bp
chr6 133767844 133767844 1 + G A SKCM 133767841 + 133767821 133767861 41 ATACTCCAGGTAGCTCCAAACTGGAAAAATCTAATCTCAGC ATACTCCAGGTAGCTCCAAACTGAAAAAATCTAATCTCAGC < 41bp 0.780364275699293 0.5801684741132 0.2828981 0.49413297 prediction 0.400391603172185 Functional Loss - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133767841 chr6:133767844 nonsynonymous SNV 0.990 0 24 hm5C_associated_SNPs_99014 0 0 1 0 2 EYA4 chr6:133767892 5'GT 133767892 Upstream 49bp
chr21 43824075 43824075 1 + G T SARC 43824071 + 43824051 43824091 41 AGAGATGGCAGCGGGGGAGACGCAGCTCTACGCCAAGGTCT AGAGATGGCAGCGGGGGAGACGCATCTCTACGCCAAGGTCT < 41bp 0.761797493202401 0.561603235146057 0.72564924 0.27673805 prediction 0.400388516112689 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43824071 chr21:43824075 nonsynonymous SNV 0.990 0 25 hm5C_associated_SNPs_99017 0 0 0 0 1 UBASH3A chr21:43824167 5'GT 43824167 Upstream 93bp
chr19 2989551 2989551 1 + C T UCEC 2989548 + 2989528 2989568 41 CCCAGACCCCTGGGGCCTTCCTGCGCACCTGCCTGCTGTCC CCCAGACCCCTGGGGCCTTCCTGTGCACCTGCCTGCTGTCC < 41bp 0.745075747569633 0.544881551572482 0.012301028 0.009608239 prediction 0.400388391994302 Functional Loss - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2989548 chr19:2989551 nonsynonymous SNV 0.918 0 24 hm5C_associated_SNPs_99018 0 0 0 0 1 TLE6 chr19:2989533 3'AG 2989533 Downstream 19bp
chr1 47284381 47284381 1 + T C LUAD 47284380 + 47284360 47284400 41 CTTGCTCCGCTTTGAGTTCTCTCTGGACCCCTCACGGCTGC CTTGCTCCGCTTTGAGTTCTCCCTGGACCCCTCACGGCTGC < 41bp 0.824457985858929 0.62426568682126 0.07042205 0.08636141 prediction 0.400384598075339 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47284380 chr1:47284381 synonymous SNV . 0 22 hm5C_associated_SNPs_99022 0 0 0 0 1 CYP4B1 chr1:47284303 3'AG 47284303 Downstream 79bp
chr19 740436 740436 1 + G A rs149788617 740433 + 740413 740453 41 GTCCAGCACCACGCTGCTCCCTCGGCAGCCGCTCCCTCTGG GTCCAGCACCACGCTGCTCCCTCAGCAGCCGCTCCCTCTGG < 41bp 0.824855972662868 0.624663738987934 0.031201303 0.011852801 prediction 0.400384467349868 Functional Loss - PALM ENSG00000099864 CDS Human protein_coding chr19:740433 chr19:740436 nonsynonymous SNV 0.250 0 24 hm5C_associated_SNPs_99023 0 0 0 0 2 PALM chr19:740352 3'AG 740352 Downstream 85bp
chr19 740436 740436 1 + G A rs149788617 740433 + 740413 740453 41 GTCCAGCACCACGCTGCTCCCTCGGCAGCCGCTCCCTCTGG GTCCAGCACCACGCTGCTCCCTCAGCAGCCGCTCCCTCTGG < 41bp 0.824855972662868 0.624663738987934 0.031201303 0.011852801 prediction 0.400384467349868 Functional Loss - PALM ENSG00000099864 CDS Human protein_coding chr19:740433 chr19:740436 nonsynonymous SNV 0.250 0 24 hm5C_associated_SNPs_99023 0 0 0 0 2 PALM chr19:740483 5'GT 740483 Upstream 48bp
chr11 6415475 6415475 1 + G A rs140806787 6415472 + 6415452 6415492 41 GAAACTACTCCGGGAGCTCTCACGTGGTCCTGGACCATGAG GAAACTACTCCGGGAGCTCTCACATGGTCCTGGACCATGAG < 41bp 0.700188370811833 0.461843610528644 0.69451886 0.26362038 prediction 0.400376741623667 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6415472 chr11:6415475 nonsynonymous SNV 0.910 1 24 hm5C_associated_SNPs_99024 0 0 0 0 2 SMPD1 chr11:6415408 3'AG 6415408 Downstream 68bp
chr11 6415475 6415475 1 + G A rs140806787 6415472 + 6415452 6415492 41 GAAACTACTCCGGGAGCTCTCACGTGGTCCTGGACCATGAG GAAACTACTCCGGGAGCTCTCACATGGTCCTGGACCATGAG < 41bp 0.700188370811833 0.461843610528644 0.69451886 0.26362038 prediction 0.400376741623667 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6415472 chr11:6415475 nonsynonymous SNV 0.910 1 24 hm5C_associated_SNPs_99024 0 0 0 0 2 SMPD1 chr11:6415428 3'AG 6415428 Downstream 48bp
chr19 13910722 13910722 1 + C T UCEC 13910720 + 13910700 13910740 41 TCCAGAGCGGGGCCGTGGACCGCGTGTTGCAAGTGGGTGAG TCCAGAGCGGGGCCGTGGACCGTGTGTTGCAAGTGGGTGAG < 41bp 0.826825983985187 0.626639251061597 0.53631365 0.3403274 prediction 0.400373465847181 Functional Loss - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13910720 chr19:13910722 synonymous SNV . 0 23 hm5C_associated_SNPs_99025 0 0 0 0 1 ZSWIM4 chr19:13910735 5'GT 13910735 Upstream 14bp
chr1 43855626 43855626 1 + G C rs146927083 43855625 + 43855605 43855645 41 CTCACTGGCCCGGGCCGGCGCGGGAGGGCTGTGTGATGGCC CTCACTGGCCCGGGCCGGCGCCGGAGGGCTGTGTGATGGCC < 41bp 0.753313492587929 0.553129162947909 0.8871906 0.8417983 prediction 0.400368659280038 Functional Loss - SZT2 ENSG00000198198 UTR5 Human protein_coding chr1:43855625 chr1:43855626 . . 0 22 hm5C_associated_SNPs_99029 0 0 0 0 1 SZT2 chr1:43855666 5'GT 43855666 Upstream 41bp
chr12 109971342 109971342 1 + C T UCEC 109971339 + 109971319 109971359 41 AAGCCTCCATTCTCCATCCGCTGCGTGGAGGTGTCGGACGA AAGCCTCCATTCTCCATCCGCTGTGTGGAGGTGTCGGACGA < 41bp 0.780305598590202 0.580122696675192 0.33631402 0.28909838 prediction 0.400365803830021 Functional Loss - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109971339 chr12:109971342 synonymous SNV . 0 24 hm5C_associated_SNPs_99031 0 0 1 0 2 UBE3B chr12:109971271 3'AG 109971271 Downstream 72bp
chr12 109971342 109971342 1 + C T UCEC 109971339 + 109971319 109971359 41 AAGCCTCCATTCTCCATCCGCTGCGTGGAGGTGTCGGACGA AAGCCTCCATTCTCCATCCGCTGTGTGGAGGTGTCGGACGA < 41bp 0.780305598590202 0.580122696675192 0.33631402 0.28909838 prediction 0.400365803830021 Functional Loss - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109971339 chr12:109971342 synonymous SNV . 0 24 hm5C_associated_SNPs_99031 0 0 1 0 2 UBE3B chr12:109971363 5'GT 109971363 Upstream 22bp
chr1 192778255 192778255 1 + G A LUAD 192778252 + 192778232 192778272 41 CACGACTGCAGACCCATGGACAAGAGCGCAGGCAGTGGCCA CACGACTGCAGACCCATGGACAAAAGCGCAGGCAGTGGCCA < 41bp 0.81600424301503 0.615823787962087 0.21586478 0.13667896 prediction 0.400360910105884 Functional Loss - RGS2 ENSG00000116741 CDS Human protein_coding chr1:192778252 chr1:192778255 synonymous SNV . 0 24 hm5C_associated_SNPs_99033 0 0 1 0 1 RGS2 chr1:192778311 5'GT 192778311 Upstream 57bp
chr4 110866321 110866321 1 + G A SKCM 110866318 + 110866298 110866338 41 TTGGATAGCCAACAAACACACTGGAAAGGACATGGTTAGAA TTGGATAGCCAACAAACACACTGAAAAGGACATGGTTAGAA < 41bp 0.700179940500656 0.477116559414636 0.6143175 0.41799188 prediction 0.400359881001313 Functional Loss - EGF ENSG00000138798 CDS Human protein_coding chr4:110866318 chr4:110866321 nonsynonymous SNV 0.381 5 24 hm5C_associated_SNPs_99034 0 0 0 0 1 EGF chr4:110866229 3'AG 110866229 Downstream 93bp
chr19 53050850 53050850 1 + G T HNSC 53050848 + 53050828 53050868 41 CCTGCACAGAGGGCTTTGTACAGGGAAGTGATGTTGGAGAA CCTGCACAGAGGGCTTTGTACATGGAAGTGATGTTGGAGAA < 41bp 0.917821833059206 0.717641955342709 0.8888555 0.23772109 prediction 0.400359755432996 Functional Loss - ZNF808 ENSG00000198482 CDS Human protein_coding chr19:53050848 chr19:53050850 nonsynonymous SNV 0.416 2 23 hm5C_associated_SNPs_99035 0 0 0 0 2 ZNF808 chr19:53050765 3'AG 53050765 Downstream 86bp
chr19 53050850 53050850 1 + G T HNSC 53050848 + 53050828 53050868 41 CCTGCACAGAGGGCTTTGTACAGGGAAGTGATGTTGGAGAA CCTGCACAGAGGGCTTTGTACATGGAAGTGATGTTGGAGAA < 41bp 0.917821833059206 0.717641955342709 0.8888555 0.23772109 prediction 0.400359755432996 Functional Loss - ZNF808 ENSG00000198482 CDS Human protein_coding chr19:53050848 chr19:53050850 nonsynonymous SNV 0.416 2 23 hm5C_associated_SNPs_99035 0 0 0 0 2 ZNF808 chr19:53050891 5'GT 53050891 Upstream 42bp
chr13 25265130 25265130 1 + C T COAD 25265127 + 25265107 25265147 41 ACTTCCCCTGTAGGCACTGTCACCGGCATGGTTATCAACAC ACTTCCCCTGTAGGCACTGTCACTGGCATGGTTATCAACAC < 41bp 0.770787573161643 0.570610549299775 0.24789727 0.18309233 prediction 0.400354047723735 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25265127 chr13:25265130 synonymous SNV . 0 24 hm5C_associated_SNPs_99041 0 0 0 0 2 ATP12A chr13:25265102 3'AG 25265102 Downstream 29bp
chr13 25265130 25265130 1 + C T COAD 25265127 + 25265107 25265147 41 ACTTCCCCTGTAGGCACTGTCACCGGCATGGTTATCAACAC ACTTCCCCTGTAGGCACTGTCACTGGCATGGTTATCAACAC < 41bp 0.770787573161643 0.570610549299775 0.24789727 0.18309233 prediction 0.400354047723735 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25265127 chr13:25265130 synonymous SNV . 0 24 hm5C_associated_SNPs_99041 0 0 0 0 2 ATP12A chr13:25265120 3'AG 25265120 Downstream 11bp
chr16 640428 640428 1 + G T LUAD 640426 + 640406 640446 41 GCAGAGTCCCCGTACGCCTACAGTAACGGTAAGGCCCGGCC GCAGAGTCCCCGTACGCCTACATTAACGGTAAGGCCCGGCC < 41bp 0.700175786313656 0.354865704695833 0.11247271 0.072548 prediction 0.400351572627313 Functional Loss - RAB40C ENSG00000197562 CDS Human protein_coding chr16:640426 chr16:640428 nonsynonymous SNV 0.970 0 23 hm5C_associated_SNPs_99042 0 0 1 0 1 RAB40C chr16:640433 5'GT 640433 Upstream 6bp
chr1 151261143 151261143 1 + G T LUAD 151261139 + 151261119 151261159 41 AAGCCAATTTTCAGACCCATCTCCGGGAGGCCTGTCTGCAC AAGCCAATTTTCAGACCCATCTCCTGGAGGCCTGTCTGCAC < 41bp 0.730855025881402 0.530680194577464 0.5392556 0.08034563 prediction 0.400349662607876 Functional Loss - ZNF687 ENSG00000143373 CDS Human protein_coding chr1:151261139 chr1:151261143 nonsynonymous SNV 0.992 0 25 hm5C_associated_SNPs_99043 0 0 1 0 1 ZNF687 chr1:151261182 5'GT 151261182 Upstream 40bp
chr19 10812295 10812295 1 + C T ESCA 10812292 + 10812272 10812312 41 ATGCCAGTGGGCACGCAGGCCACCATGAAGGGCATCACGAC ATGCCAGTGGGCACGCAGGCCACTATGAAGGGCATCACGAC < 41bp 0.744158504415908 0.543985283994911 0.12694335 0.07845101 prediction 0.400346440841994 Functional Loss - QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10812292 chr19:10812295 synonymous SNV . 0 24 hm5C_associated_SNPs_99044 0 0 1 0 1 QTRT1 chr19:10812379 5'GT 10812379 Upstream 85bp
chr1 15541857 15541857 1 + C T STAD 15541854 + 15541834 15541874 41 GTATCAGGGATAAGAGGAAGCAGCGGCAGGGCGAGGACCTG GTATCAGGGATAAGAGGAAGCAGTGGCAGGGCGAGGACCTG < 41bp 0.753612567543624 0.55344759432782 0.8771854 0.80913305 prediction 0.400329946431608 Functional Loss - TMEM51 ENSG00000171729 CDS Human protein_coding chr1:15541854 chr1:15541857 nonsynonymous SNV 0.930 3 24 hm5C_associated_SNPs_99045 0 0 0 0 1 TMEM51 chr1:15541927 5'GT 15541927 Upstream 71bp
chr8 39782849 39782849 1 + G T LUAD 39782845 + 39782825 39782865 41 CAGGCCAAAGCAGCGTCTTTCAGTGCTTTGACGTCCTGCTG CAGGCCAAAGCAGCGTCTTTCAGTTCTTTGACGTCCTGCTG < 41bp 0.744893517845811 0.54473068203394 0.8644517 0.5628043 prediction 0.400325671623742 Functional Loss - IDO1 ENSG00000131203 CDS Human protein_coding chr8:39782845 chr8:39782849 nonsynonymous SNV 0.397 4 25 hm5C_associated_SNPs_99046 0 0 0 1 1 IDO1 chr8:39782890 5'GT 39782890 Upstream 42bp
chr3 64184562 64184562 1 - G A LGG 64184565 - 64184545 64184585 41 CTGGAGATGGAGAAGACCATCAGCAAACTCATGTTTGACTT CTGGAGATGGAGAAGACCATCAGTAAACTCATGTTTGACTT < 41bp 0.775519640326981 0.57535709518129 0.29455644 0.088088304 prediction 0.400325090291384 Functional Loss - PRICKLE2 ENSG00000163637 CDS Human protein_coding chr3:64184565 chr3:64184562 synonymous SNV . 0 24 hm5C_associated_SNPs_99047 0 0 0 0 1 PRICKLE2-AS3 chr3:64184643 3'AG 64184643 Downstream 82bp
chr16 49430375 49430375 1 + C T STAD 49430372 + 49430352 49430392 41 CAGTCGACCCAGAGTCCACTCAGCGGCCAAACCCATTCCGT CAGTCGACCCAGAGTCCACTCAGTGGCCAAACCCATTCCGT < 41bp 0.728868068377679 0.528706868959004 0.8094648 0.3065098 prediction 0.400322398837349 Functional Loss - C16orf78 ENSG00000166152 CDS Human protein_coding chr16:49430372 chr16:49430375 nonsynonymous SNV 0.000 4 24 hm5C_associated_SNPs_99049 0 0 0 0 1 C16orf78 chr16:49430334 3'AG 49430334 Downstream 42bp
chr7 129351370 129351370 1 + C T UCEC 129351368 + 129351348 129351388 41 GATGCTTCAGAATTGCCAACCACGGTCACCGTTGCCCAAGT GATGCTTCAGAATTGCCAACCATGGTCACCGTTGCCCAAGT < 41bp 0.700159751443518 0.412272943424745 0.29156092 0.25488144 prediction 0.400319502887036 Functional Loss - NRF1 ENSG00000106459 CDS Human protein_coding chr7:129351368 chr7:129351370 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_99050 0 0 1 0 2 NRF1 chr7:129351315 3'AG 129351315 Downstream 56bp
chr7 129351370 129351370 1 + C T UCEC 129351368 + 129351348 129351388 41 GATGCTTCAGAATTGCCAACCACGGTCACCGTTGCCCAAGT GATGCTTCAGAATTGCCAACCATGGTCACCGTTGCCCAAGT < 41bp 0.700159751443518 0.412272943424745 0.29156092 0.25488144 prediction 0.400319502887036 Functional Loss - NRF1 ENSG00000106459 CDS Human protein_coding chr7:129351368 chr7:129351370 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_99050 0 0 1 0 2 NRF1 chr7:129351416 5'GT 129351416 Upstream 47bp
chr3 196386667 196386667 1 + G T LUAD 196386663 + 196386643 196386683 41 CCGAGGGCAGAGCCTCGCTTCGGTGCCCAGCAGCCTCCCGC CCGAGGGCAGAGCCTCGCTTCGGTTCCCAGCAGCCTCCCGC < 41bp 0.756241249855769 0.556083082130793 0.29103333 0.072387695 prediction 0.400316335449953 Functional Loss - NRROS ENSG00000174004 CDS Human protein_coding chr3:196386663 chr3:196386667 synonymous SNV . 0 25 hm5C_associated_SNPs_99052 0 0 0 0 1 NRROS chr3:196386623 3'AG 196386623 Downstream 45bp
chr9 95796861 95796861 1 + C T COAD 95796858 + 95796838 95796878 41 GACCCCCAGCCCAGCCTGCTCTGCGGCCCCCTGCGGCTGTC GACCCCCAGCCCAGCCTGCTCTGTGGCCCCCTGCGGCTGTC < 41bp 0.780205176117681 0.580050678438799 0.15509057 0.123992085 prediction 0.400308995357763 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95796858 chr9:95796861 synonymous SNV . 0 24 hm5C_associated_SNPs_99054 0 0 0 0 2 FGD3 chr9:95796823 3'AG 95796823 Downstream 39bp
chr9 95796861 95796861 1 + C T COAD 95796858 + 95796838 95796878 41 GACCCCCAGCCCAGCCTGCTCTGCGGCCCCCTGCGGCTGTC GACCCCCAGCCCAGCCTGCTCTGTGGCCCCCTGCGGCTGTC < 41bp 0.780205176117681 0.580050678438799 0.15509057 0.123992085 prediction 0.400308995357763 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95796858 chr9:95796861 synonymous SNV . 0 24 hm5C_associated_SNPs_99054 0 0 0 0 2 FGD3 chr9:95796826 3'AG 95796826 Downstream 36bp
chr12 53448212 53448212 1 + G C LUSC 53448211 + 53448191 53448231 41 ATGTGCTGCAATCCAAGCACCGGGACAAGTACCTGGTGAGG ATGTGCTGCAATCCAAGCACCCGGACAAGTACCTGGTGAGG < 41bp 0.700154292321413 0.38006706493699 0.90284014 0.4855713 prediction 0.400308584642825 Functional Loss - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53448211 chr12:53448212 nonsynonymous SNV 0.957 2 22 hm5C_associated_SNPs_99055 0 0 0 0 1 TNS2 chr12:53448225 5'GT 53448225 Upstream 14bp
chr19 55106338 55106338 1 + A C rs16989288 55106337 + 55106317 55106357 41 ATCCATCACCTGGGAACACACAGGGCGGTATCGCTGTTTCT ATCCATCACCTGGGAACACACCGGGCGGTATCGCTGTTTCT < 41bp 0.858304693792436 0.658151633299225 0.928493 0.91268516 prediction 0.400306120986421 Functional Loss - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55106337 chr19:55106338 synonymous SNV . 0 22 hm5C_associated_SNPs_99056 0 0 0 0 1 LILRA1 chr19:55106417 5'GT 55106417 Upstream 80bp
chr5 75490762 75490762 1 + G T LUAD 75490758 + 75490738 75490778 41 TTGCAGGCAGCATAGTGTACCTCGGGATGATGGTGGGGGCG TTGCAGGCAGCATAGTGTACCTCGTGATGATGGTGGGGGCG < 41bp 0.713973829365861 0.51382111998467 0.1237711 0.068485856 prediction 0.40030541876238 Functional Loss - SV2C ENSG00000122012 CDS Human protein_coding chr5:75490758 chr5:75490762 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99057 0 0 0 0 1 SV2C chr5:75490744 3'AG 75490744 Downstream 19bp
chr3 10130579 10130579 1 + G T UCEC 10130577 + 10130557 10130597 41 GATTGCTGGTGTTGGTGTCCCAGAACTGATCAACTCTCCTA GATTGCTGGTGTTGGTGTCCCATAACTGATCAACTCTCCTA < 41bp 0.7001526053318 0.356915988330309 0.66613925 0.15448242 prediction 0.4003052106636 Functional Loss - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10130577 chr3:10130579 stopgain 0.985 1 23 hm5C_associated_SNPs_99058 0 0 1 0 2 FANCD2 chr3:10130512 3'AG 10130512 Downstream 68bp
chr3 10130579 10130579 1 + G T UCEC 10130577 + 10130557 10130597 41 GATTGCTGGTGTTGGTGTCCCAGAACTGATCAACTCTCCTA GATTGCTGGTGTTGGTGTCCCATAACTGATCAACTCTCCTA < 41bp 0.7001526053318 0.356915988330309 0.66613925 0.15448242 prediction 0.4003052106636 Functional Loss - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10130577 chr3:10130579 stopgain 0.985 1 23 hm5C_associated_SNPs_99058 0 0 1 0 2 FANCD2 chr3:10130634 5'GT 10130634 Upstream 56bp
chr4 88903735 88903735 1 + T C UCEC 88903734 + 88903714 88903754 41 CCATCCCCGTTGCCCAGGACCTGAACGCGCCTTCTGATTGG CCATCCCCGTTGCCCAGGACCCGAACGCGCCTTCTGATTGG < 41bp 0.827656462372361 0.627506180270734 0.13970643 0.04785174 prediction 0.400300564203254 Functional Loss - SPP1 ENSG00000118785 CDS Human protein_coding chr4:88903734 chr4:88903735 nonsynonymous SNV 0.003 3 22 hm5C_associated_SNPs_99061 0 0 1 0 1 SPP1 chr4:88903644 3'AG 88903644 Downstream 92bp
chr6 49483375 49483375 1 + G T SARC 49483371 + 49483351 49483391 41 GGTTATCTGACTCAGGTTTACGGAGCGGTGATGAACATAAA GGTTATCTGACTCAGGTTTACGGATCGGTGATGAACATAAA < 41bp 0.704842189371781 0.504696724754033 0.90848756 0.27059168 prediction 0.400290929235495 Functional Loss - GLYATL3 ENSG00000203972 CDS Human protein_coding chr6:49483371 chr6:49483375 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_99064 0 0 0 0 2 GLYATL3 chr6:49483366 3'AG 49483366 Downstream 10bp
chr6 49483375 49483375 1 + G T SARC 49483371 + 49483351 49483391 41 GGTTATCTGACTCAGGTTTACGGAGCGGTGATGAACATAAA GGTTATCTGACTCAGGTTTACGGATCGGTGATGAACATAAA < 41bp 0.704842189371781 0.504696724754033 0.90848756 0.27059168 prediction 0.400290929235495 Functional Loss - GLYATL3 ENSG00000203972 CDS Human protein_coding chr6:49483371 chr6:49483375 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_99064 0 0 0 0 2 GLYATL3 chr6:49483473 5'GT 49483473 Upstream 99bp
chr4 154523477 154523477 1 + G A UCEC 154523474 + 154523454 154523494 41 CCCTGGACCCAAACACATCCCGCGATATCAGCATTGTGTAA CCCTGGACCCAAACACATCCCGCAATATCAGCATTGTGTAA < 41bp 0.789192719918844 0.589048041457955 0.14637706 0.006071776 prediction 0.400289356921777 Functional Loss - TMEM131L ENSG00000121210 CDS Human protein_coding chr4:154523474 chr4:154523477 nonsynonymous SNV 0.943 3 24 hm5C_associated_SNPs_99066 0 0 0 0 1 TMEM131L chr4:154523490 5'GT 154523490 Upstream 14bp
chr12 38710783 38710783 1 + G T KIRC 38710779 + 38710759 38710799 41 CTCCTCTTCTCCGCCTTCAGCCGGGCGCTGCGAGAGCCCTA CTCCTCTTCTCCGCCTTCAGCCGGTCGCTGCGAGAGCCCTA < 41bp 0.700143236460134 0.493706251314407 0.90618885 0.27290487 prediction 0.400286472920268 Functional Loss - ALG10B ENSG00000175548 CDS Human protein_coding chr12:38710779 chr12:38710783 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_99067 0 0 1 0 1 ALG10B chr12:38710866 5'GT 38710866 Upstream 84bp
chr8 2017471 2017471 1 + C T STAD 2017468 + 2017448 2017488 41 CGGACAAGTGTCCACCAACGCGGCGGTGGTGGTGAGAAGTG CGGACAAGTGTCCACCAACGCGGTGGTGGTGGTGAGAAGTG < 41bp 0.734981373293702 0.534839937905184 0.8981054 0.89501786 prediction 0.400282870777036 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2017468 chr8:2017471 nonsynonymous SNV 0.025 2 24 hm5C_associated_SNPs_99070 0 0 0 0 3 MYOM2 chr8:2017397 3'AG 2017397 Downstream 75bp
chr8 2017471 2017471 1 + C T STAD 2017468 + 2017448 2017488 41 CGGACAAGTGTCCACCAACGCGGCGGTGGTGGTGAGAAGTG CGGACAAGTGTCCACCAACGCGGTGGTGGTGGTGAGAAGTG < 41bp 0.734981373293702 0.534839937905184 0.8981054 0.89501786 prediction 0.400282870777036 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2017468 chr8:2017471 nonsynonymous SNV 0.025 2 24 hm5C_associated_SNPs_99070 0 0 0 0 3 MYOM2 chr8:2017485 5'GT 2017485 Upstream 15bp
chr8 2017471 2017471 1 + C T STAD 2017468 + 2017448 2017488 41 CGGACAAGTGTCCACCAACGCGGCGGTGGTGGTGAGAAGTG CGGACAAGTGTCCACCAACGCGGTGGTGGTGGTGAGAAGTG < 41bp 0.734981373293702 0.534839937905184 0.8981054 0.89501786 prediction 0.400282870777036 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2017468 chr8:2017471 nonsynonymous SNV 0.025 2 24 hm5C_associated_SNPs_99070 0 0 0 0 3 MYOM2 chr8:2017566 5'GT 2017566 Upstream 96bp
chr10 86017730 86017730 1 + G T UCEC 86017726 + 86017706 86017746 41 CTGTATCTATACGCAGTCATCGCAGACGTGACTTCCATCTC CTGTATCTATACGCAGTCATCGCATACGTGACTTCCATCTC < 41bp 0.700139217540809 0.497100542091005 0.5315768 0.11815885 prediction 0.400278435081619 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86017726 chr10:86017730 nonsynonymous SNV 0.409 4 25 hm5C_associated_SNPs_99071 0 0 0 0 2 RGR chr10:86017649 3'AG 86017649 Downstream 82bp
chr10 86017730 86017730 1 + G T UCEC 86017726 + 86017706 86017746 41 CTGTATCTATACGCAGTCATCGCAGACGTGACTTCCATCTC CTGTATCTATACGCAGTCATCGCATACGTGACTTCCATCTC < 41bp 0.700139217540809 0.497100542091005 0.5315768 0.11815885 prediction 0.400278435081619 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86017726 chr10:86017730 nonsynonymous SNV 0.409 4 25 hm5C_associated_SNPs_99071 0 0 0 0 2 RGR chr10:86017762 5'GT 86017762 Upstream 33bp
chr6 3017156 3017156 1 + G T COAD 3017153 + 3017133 3017173 41 CTTTCCGTAACCACGGGAGGCACGGCCGAGATGTACACGAA CTTTCCGTAACCACGGGAGGCACTGCCGAGATGTACACGAA < 41bp 0.700139213403564 0.29505306316512 0.5707583 0.2647977 prediction 0.400278426807129 Functional Loss - NQO2 ENSG00000124588 CDS Human protein_coding chr6:3017153 chr6:3017156 synonymous SNV . 0 24 hm5C_associated_SNPs_99072 0 0 1 0 1 NQO2 chr6:3017219 5'GT 3017219 Upstream 64bp
chr19 39207744 39207744 1 + C T UCEC 39207741 + 39207721 39207761 41 CACAGCTCCTGGAGTGGATCCGGCGCACCATCCCCTGGCTG CACAGCTCCTGGAGTGGATCCGGTGCACCATCCCCTGGCTG < 41bp 0.740431447734205 0.540294374879351 0.8694987 0.7636603 prediction 0.400274145709707 Functional Loss - ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39207741 chr19:39207744 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_99074 0 0 1 0 1 ACTN4 chr19:39207726 3'AG 39207726 Downstream 19bp
chr3 158376774 158376774 1 + A C LUSC 158376773 + 158376753 158376793 41 GGAGAGCTAAAGAAGGGTGACACCATCTATAACACAAGGAC GGAGAGCTAAAGAAGGGTGACCCCATCTATAACACAAGGAC < 41bp 0.700135324801552 0.449836701214754 0.06806019 0.09556186 prediction 0.400270649603103 Functional Loss - GFM1 ENSG00000168827 CDS Human protein_coding chr3:158376773 chr3:158376774 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_99077 0 0 1 0 1 GFM1 chr3:158376711 3'AG 158376711 Downstream 64bp
chr3 158376776 158376776 1 + C T SKCM 158376773 + 158376753 158376793 41 GGAGAGCTAAAGAAGGGTGACACCATCTATAACACAAGGAC GGAGAGCTAAAGAAGGGTGACACTATCTATAACACAAGGAC < 41bp 0.700135324801552 0.473043356191316 0.06806019 0.059677064 prediction 0.400270649603103 Functional Loss - GFM1 ENSG00000168827 CDS Human protein_coding chr3:158376773 chr3:158376776 synonymous SNV . 0 24 hm5C_associated_SNPs_99078 0 0 1 0 1 GFM1 chr3:158376711 3'AG 158376711 Downstream 66bp
chr1 16064627 16064627 1 + G T COAD 16064624 + 16064604 16064644 41 TGGAGACCATCTGGCGGCAGCAAGGGCTCTTGGGGCTGTGG TGGAGACCATCTGGCGGCAGCAATGGCTCTTGGGGCTGTGG < 41bp 0.700135202713206 0.283884720994748 0.89218223 0.48819858 prediction 0.400270405426413 Functional Loss - SLC25A34 ENSG00000162461 CDS Human protein_coding chr1:16064624 chr1:16064627 nonsynonymous SNV 0.317 5 24 hm5C_associated_SNPs_99079 0 0 0 0 1 SLC25A34 chr1:16064588 3'AG 16064588 Downstream 40bp
chr1 156024696 156024696 1 + G T SARC 156024692 + 156024672 156024712 41 ACCGTAGGCATGCTGCGCCCCAAGGCTTTGACCCAGGTGCT ACCGTAGGCATGCTGCGCCCCAAGTCTTTGACCCAGGTGCT < 41bp 0.700131713530796 0.485942247376624 0.24733266 0.13000813 prediction 0.400263427061591 Functional Loss - LAMTOR2 ENSG00000116586 CDS Human protein_coding chr1:156024692 chr1:156024696 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_99081 0 0 1 0 1 LAMTOR2 chr1:156024748 5'GT 156024748 Upstream 53bp
chr16 67399213 67399213 1 + G A SKCM 67399210 + 67399190 67399230 41 TTTCGAACTTTTTTTAGACACAGGAAGTAGCAAGAAGGGAG TTTCGAACTTTTTTTAGACACAGAAAGTAGCAAGAAGGGAG < 41bp 0.794240662840894 0.594109198250412 0.29803103 0.09770551 prediction 0.400262929180965 Functional Loss - LRRC36 ENSG00000159708 CDS Human protein_coding chr16:67399210 chr16:67399213 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_99082 0 0 0 0 2 LRRC36 chr16:67399207 3'AG 67399207 Downstream 7bp
chr16 67399213 67399213 1 + G A SKCM 67399210 + 67399190 67399230 41 TTTCGAACTTTTTTTAGACACAGGAAGTAGCAAGAAGGGAG TTTCGAACTTTTTTTAGACACAGAAAGTAGCAAGAAGGGAG < 41bp 0.794240662840894 0.594109198250412 0.29803103 0.09770551 prediction 0.400262929180965 Functional Loss - LRRC36 ENSG00000159708 CDS Human protein_coding chr16:67399210 chr16:67399213 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_99082 0 0 0 0 2 LRRC36 chr16:67399258 5'GT 67399258 Upstream 46bp
chr1 47505132 47505132 1 + T C UCEC 47505131 + 47505111 47505151 41 GGATCCTTTACTGCCTGGCTCTGAACCCTGAGCATCAAGAG GGATCCTTTACTGCCTGGCTCCGAACCCTGAGCATCAAGAG < 41bp 0.700130087485219 0.439749433299944 0.045627236 0.037663013 prediction 0.400260174970439 Functional Loss - CYP4X1 ENSG00000186377 CDS Human protein_coding chr1:47505131 chr1:47505132 nonsynonymous SNV 0.990 0 22 hm5C_associated_SNPs_99083 0 0 0 0 1 CYP4X1 chr1:47505204 5'GT 47505204 Upstream 73bp
chr15 66797698 66797698 1 + G T LUSC 66797694 + 66797674 66797714 41 GGGATGTGGGAGCGGCTGAACTGCGCAGCAGAGGACTTTTA GGGATGTGGGAGCGGCTGAACTGCTCAGCAGAGGACTTTTA < 41bp 0.708579038862292 0.508450049746735 0.24747524 0.21483919 prediction 0.400257978231114 Functional Loss - ZWILCH ENSG00000174442 CDS Human protein_coding chr15:66797694 chr15:66797698 nonsynonymous SNV 0.002 4 25 hm5C_associated_SNPs_99085 0 0 1 0 1 ZWILCH chr15:66797729 5'GT 66797729 Upstream 32bp
chr3 180324343 180324343 1 + G T UCS 180324341 + 180324321 180324361 41 TTAGAAAACTGTCCAACTCACAGAAATGCAAGAAAATACCT TTAGAAAACTGTCCAACTCACATAAATGCAAGAAAATACCT < 41bp 0.700123552783714 0.365083570222781 0.29451936 0.10470176 prediction 0.400247105567429 Functional Loss - TTC14 ENSG00000163728 CDS Human protein_coding chr3:180324341 chr3:180324343 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_99088 0 0 1 0 2 TTC14 chr3:180324269 3'AG 180324269 Downstream 75bp
chr3 180324343 180324343 1 + G T UCS 180324341 + 180324321 180324361 41 TTAGAAAACTGTCCAACTCACAGAAATGCAAGAAAATACCT TTAGAAAACTGTCCAACTCACATAAATGCAAGAAAATACCT < 41bp 0.700123552783714 0.365083570222781 0.29451936 0.10470176 prediction 0.400247105567429 Functional Loss - TTC14 ENSG00000163728 CDS Human protein_coding chr3:180324341 chr3:180324343 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_99088 0 0 1 0 2 TTC14 chr3:180324391 5'GT 180324391 Upstream 49bp
chr19 42312888 42312888 1 + C T STAD 42312885 + 42312865 42312905 41 GGCCTTCCTGTGGGGGCCGTCGCCGGCATCGTGACCGGGGT GGCCTTCCTGTGGGGGCCGTCGCTGGCATCGTGACCGGGGT < 41bp 0.731507416322067 0.531384634653674 0.6150696 0.42974433 prediction 0.400245563336787 Functional Loss - CEACAM3 ENSG00000170956 CDS Human protein_coding chr19:42312885 chr19:42312888 synonymous SNV . 0 24 hm5C_associated_SNPs_99090 0 0 0 0 3 CEACAM3 chr19:42312851 3'AG 42312851 Downstream 38bp
chr19 42312888 42312888 1 + C T STAD 42312885 + 42312865 42312905 41 GGCCTTCCTGTGGGGGCCGTCGCCGGCATCGTGACCGGGGT GGCCTTCCTGTGGGGGCCGTCGCTGGCATCGTGACCGGGGT < 41bp 0.731507416322067 0.531384634653674 0.6150696 0.42974433 prediction 0.400245563336787 Functional Loss - CEACAM3 ENSG00000170956 CDS Human protein_coding chr19:42312885 chr19:42312888 synonymous SNV . 0 24 hm5C_associated_SNPs_99090 0 0 0 0 3 CEACAM3 chr19:42312854 3'AG 42312854 Downstream 35bp
chr19 42312888 42312888 1 + C T STAD 42312885 + 42312865 42312905 41 GGCCTTCCTGTGGGGGCCGTCGCCGGCATCGTGACCGGGGT GGCCTTCCTGTGGGGGCCGTCGCTGGCATCGTGACCGGGGT < 41bp 0.731507416322067 0.531384634653674 0.6150696 0.42974433 prediction 0.400245563336787 Functional Loss - CEACAM3 ENSG00000170956 CDS Human protein_coding chr19:42312885 chr19:42312888 synonymous SNV . 0 24 hm5C_associated_SNPs_99090 0 0 0 0 3 CEACAM3 chr19:42312968 5'GT 42312968 Upstream 81bp
chr1 109704624 109704624 1 + G T UCEC 109704620 + 109704600 109704640 41 ACCAGCCTGCCTGACCCCATCAAGGGCACCGAGTGCTGTAA ACCAGCCTGCCTGACCCCATCAAGTGCACCGAGTGCTGTAA < 41bp 0.743271919923318 0.543150194296287 0.91346973 0.54269713 prediction 0.400243451254061 Functional Loss - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109704620 chr1:109704624 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99091 0 0 1 0 1 KIAA1324 chr1:109704636 5'GT 109704636 Upstream 13bp
chr18 33738800 33738800 1 + A T BLCA 33738798 + 33738778 33738818 41 TATTATATTTTCTATTCTAGCAAGATAGTGATCTTCCAGAA TATTATATTTTCTATTCTAGCATGATAGTGATCTTCCAGAA < 41bp 0.728745179579069 0.528624877008437 0.43283683 0.22620097 prediction 0.400240605141265 Functional Loss - ELP2 ENSG00000134759 CDS Human protein_coding chr18:33738798 chr18:33738800 nonsynonymous SNV 0.083 0 23 hm5C_associated_SNPs_99092 0 0 1 1 1 ELP2 chr18:33738798 3'AG 33738798 Downstream 3bp
chr22 24656969 24656969 1 + C T UCEC 24656967 + 24656947 24656987 41 GTCCTCAGGGAGGGAGTGACCTCGACCCTGGCTGTGCTGCA GTCCTCAGGGAGGGAGTGACCTTGACCCTGGCTGTGCTGCA < 41bp 0.826813607539023 0.626695841189873 0.5927313 0.1101369 prediction 0.4002355326983 Functional Loss - POM121L9P ENSG00000128262 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:24656967 chr22:24656969 . . 0 23 hm5C_associated_SNPs_99094 0 0 0 0 2 POM121L9P chr22:24656876 3'AG 24656876 Downstream 94bp
chr22 24656969 24656969 1 + C T UCEC 24656967 + 24656947 24656987 41 GTCCTCAGGGAGGGAGTGACCTCGACCCTGGCTGTGCTGCA GTCCTCAGGGAGGGAGTGACCTTGACCCTGGCTGTGCTGCA < 41bp 0.826813607539023 0.626695841189873 0.5927313 0.1101369 prediction 0.4002355326983 Functional Loss - POM121L9P ENSG00000128262 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:24656967 chr22:24656969 . . 0 23 hm5C_associated_SNPs_99094 0 0 0 0 2 POM121L9P chr22:24657004 5'GT 24657004 Upstream 36bp
chr12 8242619 8242619 1 + G A SKCM 8242616 + 8242596 8242636 41 AAGACTGCCTATATCAAACTCGAGGATAAAGTTTCAGGTAA AAGACTGCCTATATCAAACTCGAAGATAAAGTTTCAGGTAA < 41bp 0.801892863242452 0.601785089463151 0.68375933 0.17522106 prediction 0.400215547558602 Functional Loss - NECAP1 ENSG00000089818 CDS Human protein_coding chr12:8242616 chr12:8242619 synonymous SNV . 0 24 hm5C_associated_SNPs_99097 0 0 0 0 2 NECAP1 chr12:8242532 3'AG 8242532 Downstream 88bp
chr12 8242619 8242619 1 + G A SKCM 8242616 + 8242596 8242636 41 AAGACTGCCTATATCAAACTCGAGGATAAAGTTTCAGGTAA AAGACTGCCTATATCAAACTCGAAGATAAAGTTTCAGGTAA < 41bp 0.801892863242452 0.601785089463151 0.68375933 0.17522106 prediction 0.400215547558602 Functional Loss - NECAP1 ENSG00000089818 CDS Human protein_coding chr12:8242616 chr12:8242619 synonymous SNV . 0 24 hm5C_associated_SNPs_99097 0 0 0 0 2 NECAP1 chr12:8242632 5'GT 8242632 Upstream 14bp
chr2 98351750 98351750 1 + G A LIHC 98351747 + 98351727 98351767 41 TGGCCATCAAGGTGCTGAAGCAGGGCACGGAGAAGGCAGAC TGGCCATCAAGGTGCTGAAGCAGAGCACGGAGAAGGCAGAC < 41bp 0.832791944472506 0.632685148045955 0.88933706 0.82700783 prediction 0.400213592853103 Functional Loss - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98351747 chr2:98351750 nonsynonymous SNV 0.926 1 24 hm5C_associated_SNPs_99099 0 0 0 1 1 ZAP70 chr2:98351713 3'AG 98351713 Downstream 38bp
chr19 50882300 50882300 1 + C T GBM 50882298 + 50882278 50882318 41 ACCCCCAGTCCCGAGATGCCCGCCAGCAACGCTTTGCCCAC ACCCCCAGTCCCGAGATGCCCGTCAGCAACGCTTTGCCCAC < 41bp 0.863989156504453 0.66388433148129 0.1971856 0.10298985 prediction 0.400209650046326 Functional Loss - NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50882298 chr19:50882300 synonymous SNV . 0 23 hm5C_associated_SNPs_99102 0 0 0 0 1 NR1H2 chr19:50882259 3'AG 50882259 Downstream 42bp
chr1 43770797 43770797 1 + C T ESCA 43770795 + 43770775 43770815 41 CTGCGTGGGCGGTGCTGGGGCGCGGCGCACGCGCGTCATCT CTGCGTGGGCGGTGCTGGGGCGTGGCGCACGCGCGTCATCT < 41bp 0.828886211884021 0.62878199681497 0.8328643 0.8104323 prediction 0.400208430138102 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43770795 chr1:43770797 nonsynonymous SNV 0.000 3 23 hm5C_associated_SNPs_99103 0 0 0 0 1 TIE1 chr1:43770836 5'GT 43770836 Upstream 40bp
chr15 39880262 39880262 1 + G A SKCM 39880259 + 39880239 39880279 41 TTAGTTAAACAGGATGGTGGCTGGAGCCACTGGTCCCCGTG TTAGTTAAACAGGATGGTGGCTGAAGCCACTGGTCCCCGTG < 41bp 0.825840050695428 0.625742041250815 0.46974802 0.34978485 prediction 0.400196018889227 Functional Loss - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39880259 chr15:39880262 stopgain 1.000 0 24 hm5C_associated_SNPs_99106 0 0 1 0 1 THBS1 chr15:39880243 3'AG 39880243 Downstream 20bp
chr10 114169344 114169344 1 + G A UCEC 114169341 + 114169321 114169361 41 AATGTAGAGAAAGGCTTCACCCCGAGCCTGAAGGTGATCAT AATGTAGAGAAAGGCTTCACCCCAAGCCTGAAGGTGATCAT < 41bp 0.813582465927291 0.613487336186263 0.2056573 0.09648073 prediction 0.400190259482058 Functional Loss - ACSL5 ENSG00000197142 CDS Human protein_coding chr10:114169341 chr10:114169344 synonymous SNV . 0 24 hm5C_associated_SNPs_99108 0 0 1 0 1 ACSL5 chr10:114169443 5'GT 114169443 Upstream 100bp
chr9 12821469 12821469 1 + G C HNSC 12821468 + 12821448 12821488 41 GAGTCCATCAAGTGGATGATCGAAGAAAAAGCCACCATTAC GAGTCCATCAAGTGGATGATCCAAGAAAAAGCCACCATTAC < 41bp 0.700093638068602 0.382893913837688 0.7988585 0.2925529 prediction 0.400187276137205 Functional Loss - LURAP1L ENSG00000153714 CDS Human protein_coding chr9:12821468 chr9:12821469 nonsynonymous SNV 0.964 4 22 hm5C_associated_SNPs_99109 0 0 0 0 1 LURAP1L chr9:12821385 3'AG 12821385 Downstream 85bp
chr18 33557490 33557490 1 + C T rs148863953 33557488 + 33557468 33557508 41 AAGTAAACTCAGCCTGAAGACACCAGAGAGAAGGACTGCAA AAGTAAACTCAGCCTGAAGACATCAGAGAGAAGGACTGCAA < 41bp 0.879570031112968 0.679477306089503 0.17466953 0.15810263 prediction 0.400185450046932 Functional Loss - C18orf21 ENSG00000141428 CDS Human protein_coding chr18:33557488 chr18:33557490 nonsynonymous SNV 0.471 3 23 hm5C_associated_SNPs_99110 0 0 1 0 1 C18orf21 chr18:33557563 5'GT 33557563 Upstream 74bp
chr16 24166130 24166130 1 + T C rs432998 24166129 + 24166109 24166149 41 GAAGCGGGTGTTGGCCCTGCCTGGGAAGCCGCCCTTCCTGA GAAGCGGGTGTTGGCCCTGCCCGGGAAGCCGCCCTTCCTGA < 41bp 0.821836095161004 0.621745387544024 0.61818534 0.8179487 prediction 0.400181415233961 Functional Loss - PRKCB ENSG00000166501 CDS Human protein_coding chr16:24166129 chr16:24166130 synonymous SNV . 0 22 hm5C_associated_SNPs_99111 0 0 1 0 1 PRKCB chr16:24166178 5'GT 24166178 Upstream 49bp
chr2 95715367 95715367 1 + C T UCEC 95715364 + 95715344 95715384 41 ACCGCTGCCCTCTTTTACCTCAGCGCCTCAGTCCTGGAGGC ACCGCTGCCCTCTTTTACCTCAGTGCCTCAGTCCTGGAGGC < 41bp 0.741406513867594 0.541319378079259 0.3704934 0.23547754 prediction 0.400174271576669 Functional Loss - MAL ENSG00000172005 CDS Human protein_coding chr2:95715364 chr2:95715367 synonymous SNV . 0 24 hm5C_associated_SNPs_99115 0 0 0 0 2 MAL chr2:95715326 3'AG 95715326 Downstream 42bp
chr2 95715367 95715367 1 + C T UCEC 95715364 + 95715344 95715384 41 ACCGCTGCCCTCTTTTACCTCAGCGCCTCAGTCCTGGAGGC ACCGCTGCCCTCTTTTACCTCAGTGCCTCAGTCCTGGAGGC < 41bp 0.741406513867594 0.541319378079259 0.3704934 0.23547754 prediction 0.400174271576669 Functional Loss - MAL ENSG00000172005 CDS Human protein_coding chr2:95715364 chr2:95715367 synonymous SNV . 0 24 hm5C_associated_SNPs_99115 0 0 0 0 2 MAL chr2:95715451 5'GT 95715451 Upstream 85bp
chr1 17263207 17263207 1 + G A rs181280910 17263204 + 17263184 17263224 41 GAGGCGGGCCTGGGACTGAGCACGGGCCTACGGCTGGCAGA GAGGCGGGCCTGGGACTGAGCACAGGCCTACGGCTGGCAGA < 41bp 0.830036353770971 0.629949292201716 0.8923702 0.8066287 prediction 0.40017412313851 Functional Loss - CROCC ENSG00000058453 CDS Human protein_coding chr1:17263204 chr1:17263207 synonymous SNV . 0 24 hm5C_associated_SNPs_99116 0 0 0 0 1 CROCC chr1:17263132 3'AG 17263132 Downstream 76bp
chr1 37945918 37945918 1 + C T UCEC 37945915 + 37945895 37945935 41 GGGAACAAGGAGGTCTTCTCCTGCCGGGGCATCCTGCTGGC GGGAACAAGGAGGTCTTCTCCTGTCGGGGCATCCTGCTGGC < 41bp 0.769342405425094 0.569257216278366 0.291444 0.14633048 prediction 0.400170378293455 Functional Loss - ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37945915 chr1:37945918 synonymous SNV . 0 24 hm5C_associated_SNPs_99119 0 0 1 0 1 ZC3H12A chr1:37945891 3'AG 37945891 Downstream 28bp
chr2 234851235 234851235 1 + C T COAD 234851233 + 234851213 234851253 41 TTGACAGGTGCTTGGATTCTCACGGGAGGCACCCATTATGG TTGACAGGTGCTTGGATTCTCATGGGAGGCACCCATTATGG < 41bp 0.858005025435689 0.657923439124853 0.42866173 0.29679033 prediction 0.400163172621672 Functional Loss - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234851233 chr2:234851235 nonsynonymous SNV 0.726 4 23 hm5C_associated_SNPs_99120 0 0 0 0 1 TRPM8 chr2:234851220 3'AG 234851220 Downstream 16bp
chr6 39040654 39040654 1 + A C rs2235868 39040650 + 39040630 39040670 41 TCCCTCAGACACCTGCACTGCACCAGGAACTACATCCACCT TCCCTCAGACACCTGCACTGCACCCGGAACTACATCCACCT < 41bp 0.700081068895962 0.259748794389582 0.022611588 0.037359983 prediction 0.400162137791924 Functional Loss - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39040650 chr6:39040654 synonymous SNV . 0 25 hm5C_associated_SNPs_99122 0 0 0 1 1 GLP1R chr6:39040638 3'AG 39040638 Downstream 17bp
chr9 137777193 137777193 1 + C T rs141051476 137777191 + 137777171 137777211 41 ACTGTGCTCTGTGACATGGACACGGACGGAGGGGGCTGGAC ACTGTGCTCTGTGACATGGACATGGACGGAGGGGGCTGGAC < 41bp 0.843537164130477 0.643459712058605 0.24928707 0.2283307 prediction 0.400154904143743 Functional Loss - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137777191 chr9:137777193 nonsynonymous SNV 0.500 2 23 hm5C_associated_SNPs_99123 0 0 0 0 1 FCN2 chr9:137777212 5'GT 137777212 Upstream 20bp
chr1 92470112 92470112 1 + G T KIRC 92470109 + 92470089 92470129 41 AGGAAGTAAAAGCTCGGACACAGGAACTCATACGGAAGCAT AGGAAGTAAAAGCTCGGACACAGTAACTCATACGGAAGCAT < 41bp 0.700075903947047 0.321803747658291 0.48317805 0.283521 prediction 0.400151807894093 Functional Loss - BRDT ENSG00000137948 CDS Human protein_coding chr1:92470109 chr1:92470112 stopgain 0.999 1 24 hm5C_associated_SNPs_99124 0 0 0 0 1 BRDT chr1:92470176 5'GT 92470176 Upstream 65bp
chr17 11461136 11461136 1 + A C rs534051954 11461132 + 11461112 11461152 41 CTGCCCGACCTGGCTGCCCGCGGCACCCTCCCCCTCAATGT CTGCCCGACCTGGCTGCCCGCGGCCCCCTCCCCCTCAATGT < 41bp 0.700075725283865 0.298261418836938 0.7649984 0.38611805 prediction 0.40015145056773 Functional Loss - SHISA6 ENSG00000188803 CDS Human protein_coding chr17:11461132 chr17:11461136 nonsynonymous SNV 0.963 4 25 hm5C_associated_SNPs_99125 0 0 0 0 1 SHISA6 chr17:11461071 3'AG 11461071 Downstream 66bp
chr6 127899852 127899852 1 + G A ACC 127899849 + 127899829 127899869 41 AGGCAGATTAGCTGATCCAACCCGAAGGACAAACTGTGGCT AGGCAGATTAGCTGATCCAACCCAAAGGACAAACTGTGGCT < 41bp 0.819404600602658 0.619335331043088 0.22257331 0.1115734 prediction 0.400138539119139 Functional Loss - C6orf58 ENSG00000184530 CDS Human protein_coding chr6:127899849 chr6:127899852 nonsynonymous SNV 0.352 0 24 hm5C_associated_SNPs_99127 0 0 0 0 2 C6orf58 chr6:127899831 3'AG 127899831 Downstream 22bp
chr6 127899852 127899852 1 + G A ACC 127899849 + 127899829 127899869 41 AGGCAGATTAGCTGATCCAACCCGAAGGACAAACTGTGGCT AGGCAGATTAGCTGATCCAACCCAAAGGACAAACTGTGGCT < 41bp 0.819404600602658 0.619335331043088 0.22257331 0.1115734 prediction 0.400138539119139 Functional Loss - C6orf58 ENSG00000184530 CDS Human protein_coding chr6:127899849 chr6:127899852 nonsynonymous SNV 0.352 0 24 hm5C_associated_SNPs_99127 0 0 0 0 2 C6orf58 chr6:127899917 5'GT 127899917 Upstream 66bp
chr19 39909598 39909598 1 + C T SKCM 39909596 + 39909576 39909616 41 AGAGGCTGTGGATTCACTGTCTCCAGCGCCTCTTCTTTGAG AGAGGCTGTGGATTCACTGTCTTCAGCGCCTCTTCTTTGAG < 41bp 0.700066907390331 0.387558802583278 0.9522189 0.061446488 prediction 0.400133814780663 Functional Loss - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39909596 chr19:39909598 synonymous SNV . 0 23 hm5C_associated_SNPs_99128 0 0 0 0 2 PLEKHG2 chr19:39909557 3'AG 39909557 Downstream 42bp
chr19 39909598 39909598 1 + C T SKCM 39909596 + 39909576 39909616 41 AGAGGCTGTGGATTCACTGTCTCCAGCGCCTCTTCTTTGAG AGAGGCTGTGGATTCACTGTCTTCAGCGCCTCTTCTTTGAG < 41bp 0.700066907390331 0.387558802583278 0.9522189 0.061446488 prediction 0.400133814780663 Functional Loss - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39909596 chr19:39909598 synonymous SNV . 0 23 hm5C_associated_SNPs_99128 0 0 0 0 2 PLEKHG2 chr19:39909643 5'GT 39909643 Upstream 46bp
chr9 74526670 74526670 1 + A T KIRC 74526668 + 74526648 74526688 41 GCGATGAGCTCCCAGAAAGGCAACGTGGCTCGTTCCAGACC GCGATGAGCTCCCAGAAAGGCATCGTGGCTCGTTCCAGACC < 41bp 0.702172929635419 0.502106245193452 0.22062984 0.14713734 prediction 0.400133368883933 Functional Loss - C9orf85 ENSG00000155621 CDS Human protein_coding chr9:74526668 chr9:74526670 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_99129 0 0 1 0 1 C9orf85 chr9:74526752 5'GT 74526752 Upstream 83bp
chr1 113162482 113162482 1 + G T rs113823236 113162478 + 113162458 113162498 41 CAGCCCAAGATGGCCGACTTCGATGATCGTGTGTCGGATGA CAGCCCAAGATGGCCGACTTCGATTATCGTGTGTCGGATGA < 41bp 0.723701470475889 0.523636194722628 0.35285655 0.11649296 prediction 0.400130551506521 Functional Loss - CAPZA1 ENSG00000116489 CDS Human protein_coding chr1:113162478 chr1:113162482 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99131 0 0 1 0 1 CAPZA1 chr1:113162505 5'GT 113162505 Upstream 24bp
chr1 92446313 92446313 1 + C T COAD 92446310 + 92446290 92446330 41 AAAAAAGAAAAGGTTAATAACAGCAATGAAAATCCAAGAAA AAAAAAGAAAAGGTTAATAACAGTAATGAAAATCCAAGAAA < 41bp 0.7550805656565 0.555016175000265 0.77463084 0.4981839 prediction 0.400128781312471 Functional Loss - BRDT ENSG00000137948 CDS Human protein_coding chr1:92446310 chr1:92446313 synonymous SNV . 0 24 hm5C_associated_SNPs_99133 0 0 0 0 1 BRDT chr1:92446372 5'GT 92446372 Upstream 60bp
chr1 247597426 247597426 1 + G C LUAD 247597425 + 247597405 247597445 41 GTTGGGGCGCTGTGGCCTCTCGCATGAGTGCTGCTTCGACA GTTGGGGCGCTGTGGCCTCTCCCATGAGTGCTGCTTCGACA < 41bp 0.700063925953714 0.370416664150497 0.24753201 0.23805627 prediction 0.400127851907429 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247597425 chr1:247597426 synonymous SNV . 0 22 hm5C_associated_SNPs_99134 0 0 0 0 1 NLRP3 chr1:247597405 3'AG 247597405 Downstream 22bp
chr2 242128113 242128113 1 + C T UCEC 242128110 + 242128090 242128130 41 GCAGTGAGGACGGGACTCTACTGCCGAGACCAGGCTCACGC GCAGTGAGGACGGGACTCTACTGTCGAGACCAGGCTCACGC < 41bp 0.700063290557509 0.497705242034333 0.03946024 0.032388866 prediction 0.400126581115019 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242128110 chr2:242128113 synonymous SNV . 0 24 hm5C_associated_SNPs_99135 0 0 0 0 1 ANO7 chr2:242128181 5'GT 242128181 Upstream 69bp
chr8 120428851 120428851 1 + G A rs541889252 120428848 + 120428828 120428868 41 CCTTCCTGCTTCTCCATCTCCTGGGACAGGTAAGTGGCACA CCTTCCTGCTTCTCCATCTCCTGAGACAGGTAAGTGGCACA < 41bp 0.82133575511365 0.621279465446632 0.78874195 0.3827872 prediction 0.400112579334035 Functional Loss - NOV ENSG00000136999 CDS Human protein_coding chr8:120428848 chr8:120428851 nonsynonymous SNV 0.802 0 24 hm5C_associated_SNPs_99140 0 0 0 0 1 NOV chr8:120428856 5'GT 120428856 Upstream 6bp
chr11 7063691 7063691 1 + G A SKCM 7063688 + 7063668 7063708 41 TTGGGACAAGAAGTCTTTGGCTGGAAAGCCTGAAGATTTCC TTGGGACAAGAAGTCTTTGGCTGAAAAGCCTGAAGATTTCC < 41bp 0.700055262142767 0.468694465949386 0.17347318 0.0969775 prediction 0.400110524285533 Functional Loss - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7063688 chr11:7063691 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_99141 0 0 0 0 1 NLRP14 chr11:7063619 3'AG 7063619 Downstream 73bp
chr20 60701381 60701381 1 + G T LUSC 60701377 + 60701357 60701397 41 CAGTCTTCCCTGGGTTCTGCCTCCGCCTCGCCCTTCCAGCC CAGTCTTCCCTGGGTTCTGCCTCCTCCTCGCCCTTCCAGCC < 41bp 0.720985470874897 0.520933951175329 0.21172094 0.30016392 prediction 0.400103039399136 Functional Loss - LSM14B ENSG00000149657 CDS Human protein_coding chr20:60701377 chr20:60701381 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_99143 0 0 1 0 2 LSM14B chr20:60701282 3'AG 60701282 Downstream 100bp
chr20 60701381 60701381 1 + G T LUSC 60701377 + 60701357 60701397 41 CAGTCTTCCCTGGGTTCTGCCTCCGCCTCGCCCTTCCAGCC CAGTCTTCCCTGGGTTCTGCCTCCTCCTCGCCCTTCCAGCC < 41bp 0.720985470874897 0.520933951175329 0.21172094 0.30016392 prediction 0.400103039399136 Functional Loss - LSM14B ENSG00000149657 CDS Human protein_coding chr20:60701377 chr20:60701381 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_99143 0 0 1 0 2 LSM14B chr20:60701360 3'AG 60701360 Downstream 22bp
chr17 73512921 73512921 1 + C T BLCA 73512919 + 73512899 73512939 41 TCTGCCCGACGGCTCGGCAGCTCAGGCCGAGCGGCTGCGCC TCTGCCCGACGGCTCGGCAGCTTAGGCCGAGCGGCTGCGCC < 41bp 0.700050003807187 0.450530105795592 0.6675205 0.47614285 prediction 0.400100007614373 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73512919 chr17:73512921 stopgain 0.472 1 23 hm5C_associated_SNPs_99144 0 0 1 0 2 TSEN54 chr17:73512827 3'AG 73512827 Downstream 95bp
chr17 73512921 73512921 1 + C T BLCA 73512919 + 73512899 73512939 41 TCTGCCCGACGGCTCGGCAGCTCAGGCCGAGCGGCTGCGCC TCTGCCCGACGGCTCGGCAGCTTAGGCCGAGCGGCTGCGCC < 41bp 0.700050003807187 0.450530105795592 0.6675205 0.47614285 prediction 0.400100007614373 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73512919 chr17:73512921 stopgain 0.472 1 23 hm5C_associated_SNPs_99144 0 0 1 0 2 TSEN54 chr17:73512991 5'GT 73512991 Upstream 71bp
chr5 134023944 134023944 1 + G T STAD 134023941 + 134023921 134023961 41 CAATCCATTTCTACGGTCTTCAGGAAAGTCTCTCTCAACCT CAATCCATTTCTACGGTCTTCAGTAAAGTCTCTCTCAACCT < 41bp 0.700043092882919 0.317372525993303 0.34554565 0.08462995 prediction 0.400086185765837 Functional Loss - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134023941 chr5:134023944 stopgain 0.997 1 24 hm5C_associated_SNPs_99148 0 0 1 0 2 SEC24A chr5:134023871 3'AG 134023871 Downstream 74bp
chr5 134023944 134023944 1 + G T STAD 134023941 + 134023921 134023961 41 CAATCCATTTCTACGGTCTTCAGGAAAGTCTCTCTCAACCT CAATCCATTTCTACGGTCTTCAGTAAAGTCTCTCTCAACCT < 41bp 0.700043092882919 0.317372525993303 0.34554565 0.08462995 prediction 0.400086185765837 Functional Loss - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134023941 chr5:134023944 stopgain 0.997 1 24 hm5C_associated_SNPs_99148 0 0 1 0 2 SEC24A chr5:134023989 5'GT 134023989 Upstream 46bp
chr1 12919641 12919641 1 + G T UCEC 12919637 + 12919617 12919657 41 CTGGGCCCTGTCCTGCTTCCCAGAGGCCATGAGTAAGAGGC CTGGGCCCTGTCCTGCTTCCCAGATGCCATGAGTAAGAGGC < 41bp 0.738348354157354 0.53830908449766 0.8251307 0.6416724 prediction 0.400078539319388 Functional Loss - PRAMEF2 ENSG00000120952 CDS Human protein_coding chr1:12919637 chr1:12919641 nonsynonymous SNV 0.009 2 25 hm5C_associated_SNPs_99151 0 0 0 0 1 PRAMEF2 chr1:12919548 3'AG 12919548 Downstream 94bp
chr7 1024851 1024851 1 + C T COAD 1024848 + 1024828 1024868 41 GGCTGGGCTCCCTCCAATATCACCTTCGCGCTCCTCTTCGG GGCTGGGCTCCCTCCAATATCACTTTCGCGCTCCTCTTCGG < 41bp 0.714974638364879 0.5149369938004 0.23902574 0.27634197 prediction 0.400075289128959 Functional Loss - CYP2W1 ENSG00000073067 CDS Human protein_coding chr7:1024848 chr7:1024851 synonymous SNV . 0 24 hm5C_associated_SNPs_99153 0 0 0 0 1 CYP2W1 chr7:1024802 3'AG 1024802 Downstream 50bp
chr17 61611600 61611600 1 + G A rs61743693 61611597 + 61611577 61611617 41 CGCATCGCCGTCCACTACTTCAAGGGCTGGTTCCTCATTGA CGCATCGCCGTCCACTACTTCAAAGGCTGGTTCCTCATTGA < 41bp 0.700033341716558 0.440015531178562 0.9280203 0.49601474 prediction 0.400066683433115 Functional Loss - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61611597 chr17:61611600 synonymous SNV . 0 24 hm5C_associated_SNPs_99159 0 0 0 0 1 KCNH6 chr17:61611672 5'GT 61611672 Upstream 73bp
chr15 25448215 25448215 1 + G T UCEC 25448213 + 25448193 25448233 41 GCGCTGGAGGAGGACTTGTACTGGGGCCGCTGGCCCCACAT GCGCTGGAGGAGGACTTGTACTTGGGCCGCTGGCCCCACAT < 41bp 0.910091452531293 0.710063130926385 0.90927744 0.61421514 prediction 0.400056643209816 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25448213 chr15:25448215 . . 0 23 hm5C_associated_SNPs_99161 0 0 0 0 1 SNHG14 chr15:25448187 3'AG 25448187 Downstream 29bp
chr11 36205584 36205584 1 + C T rs12291281 36205582 + 36205562 36205602 41 CCTGGAATGCAGTGGCACATCTCGGCTCACCGCAACCTCCA CCTGGAATGCAGTGGCACATCTTGGCTCACCGCAACCTCCA < 41bp 0.762287419389789 0.562261731205556 0.41657817 0.29476923 prediction 0.400051376368465 Functional Loss - LDLRAD3 ENSG00000179241 intronic Human protein_coding chr11:36205582 chr11:36205584 . . 0 23 hm5C_associated_SNPs_99162 0 0 0 0 1 LDLRAD3 chr11:36205543 3'AG 36205543 Downstream 42bp
chr12 119563255 119563255 1 + G A PRAD 119563252 + 119563232 119563272 41 TGCCCCTCGCGGTCCCAGAGCTCGGAGTCCCGCCCCTCAAG TGCCCCTCGCGGTCCCAGAGCTCAGAGTCCCGCCCCTCAAG < 41bp 0.700024135679813 0.430844202947589 0.29863876 0.16856536 prediction 0.400048271359627 Functional Loss - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119563252 chr12:119563255 synonymous SNV . 0 24 hm5C_associated_SNPs_99164 0 0 1 0 2 SRRM4 chr12:119563186 3'AG 119563186 Downstream 70bp
chr12 119563255 119563255 1 + G A PRAD 119563252 + 119563232 119563272 41 TGCCCCTCGCGGTCCCAGAGCTCGGAGTCCCGCCCCTCAAG TGCCCCTCGCGGTCCCAGAGCTCAGAGTCCCGCCCCTCAAG < 41bp 0.700024135679813 0.430844202947589 0.29863876 0.16856536 prediction 0.400048271359627 Functional Loss - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119563252 chr12:119563255 synonymous SNV . 0 24 hm5C_associated_SNPs_99164 0 0 1 0 2 SRRM4 chr12:119563284 5'GT 119563284 Upstream 30bp
chr7 27187030 27187030 1 - G A LUSC 27187032 - 27187012 27187052 41 CTCCCGAGCAGCAGTACAAACCCGACAGCAGCAGCGGGCAG CTCCCGAGCAGCAGTACAAACCTGACAGCAGCAGCGGGCAG < 41bp 0.852399672636284 0.652376289897045 0.2205635 0.16643158 prediction 0.400046765478479 Functional Loss - HOXA6 ENSG00000106006 CDS Human protein_coding chr7:27187032 chr7:27187030 synonymous SNV . 0 23 hm5C_associated_SNPs_99165 0 0 1 0 1 HOXA6 chr7:27187041 3'AG 27187041 Downstream 12bp
chr2 47184066 47184066 1 + G A rs61746139 47184063 + 47184043 47184083 41 AGATGCCATCAGCATGTACGCACGGGCCGGGATTGATGACA AGATGCCATCAGCATGTACGCACAGGCCGGGATTGATGACA < 41bp 0.700022623321449 0.453465871878732 0.0900169 0.06947401 prediction 0.400045246642898 Functional Loss - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47184063 chr2:47184066 nonsynonymous SNV 0.172 1 24 hm5C_associated_SNPs_99166 0 0 0 0 2 TTC7A chr2:47183978 3'AG 47183978 Downstream 89bp
chr2 47184066 47184066 1 + G A rs61746139 47184063 + 47184043 47184083 41 AGATGCCATCAGCATGTACGCACGGGCCGGGATTGATGACA AGATGCCATCAGCATGTACGCACAGGCCGGGATTGATGACA < 41bp 0.700022623321449 0.453465871878732 0.0900169 0.06947401 prediction 0.400045246642898 Functional Loss - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47184063 chr2:47184066 nonsynonymous SNV 0.172 1 24 hm5C_associated_SNPs_99166 0 0 0 0 2 TTC7A chr2:47184146 5'GT 47184146 Upstream 81bp
chr15 76468012 76468012 1 + A T UCEC 76468010 + 76467990 76468030 41 TGACGCAGATCTGTCAGGAGCAAGGGGTAATGCACTGCCAC TGACGCAGATCTGTCAGGAGCATGGGGTAATGCACTGCCAC < 41bp 0.718125549302468 0.518103628025791 0.9297879 0.9134494 prediction 0.400043842553353 Functional Loss - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76468010 chr15:76468012 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_99168 0 0 0 0 1 TMEM266 chr15:76468015 5'GT 76468015 Upstream 4bp
chr4 156680962 156680962 1 + G T LUAD 156680960 + 156680940 156680980 41 ACGGATTTGTGAATCACGCCCTGGAGTTGCTGGTGATCCGC ACGGATTTGTGAATCACGCCCTTGAGTTGCTGGTGATCCGC < 41bp 0.886051952127214 0.686031667378234 0.86950535 0.37690794 prediction 0.400040569497959 Functional Loss - GUCY1B3 ENSG00000061918 CDS Human protein_coding chr4:156680960 chr4:156680962 synonymous SNV . 0 23 hm5C_associated_SNPs_99171 0 0 0 0 2 GUCY1B3 chr4:156680939 3'AG 156680939 Downstream 24bp
chr4 156680962 156680962 1 + G T LUAD 156680960 + 156680940 156680980 41 ACGGATTTGTGAATCACGCCCTGGAGTTGCTGGTGATCCGC ACGGATTTGTGAATCACGCCCTTGAGTTGCTGGTGATCCGC < 41bp 0.886051952127214 0.686031667378234 0.86950535 0.37690794 prediction 0.400040569497959 Functional Loss - GUCY1B3 ENSG00000061918 CDS Human protein_coding chr4:156680960 chr4:156680962 synonymous SNV . 0 23 hm5C_associated_SNPs_99171 0 0 0 0 2 GUCY1B3 chr4:156681012 5'GT 156681012 Upstream 51bp
chr19 805125 805125 1 + G A STAD 805122 + 805102 805142 41 TGACAAGAGCCGTGACTACACACGCCCAGACCTGCCTTCCG TGACAAGAGCCGTGACTACACACACCCAGACCTGCCTTCCG < 41bp 0.700016841767805 0.453572911546224 0.022419304 0.0041216016 prediction 0.40003368353561 Functional Loss - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:805122 chr19:805125 nonsynonymous SNV 0.331 3 24 hm5C_associated_SNPs_99173 0 0 1 0 1 PTBP1 chr19:805187 5'GT 805187 Upstream 63bp
chr19 805124 805124 1 + C T UCEC 805122 + 805102 805142 41 TGACAAGAGCCGTGACTACACACGCCCAGACCTGCCTTCCG TGACAAGAGCCGTGACTACACATGCCCAGACCTGCCTTCCG < 41bp 0.700016841767805 0.424641428741834 0.022419304 0.03537458 prediction 0.40003368353561 Functional Loss - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:805122 chr19:805124 nonsynonymous SNV 0.287 4 23 hm5C_associated_SNPs_99174 0 0 1 0 1 PTBP1 chr19:805187 5'GT 805187 Upstream 64bp
chr20 33586200 33586200 1 + C T BLCA 33586197 + 33586177 33586217 41 AGCTGGCGGACGCAAGCACGCAGCGTGGGCGACTACAGACG AGCTGGCGGACGCAAGCACGCAGTGTGGGCGACTACAGACG < 41bp 0.700262820793239 0.500247623574127 0.41464493 0.26969382 prediction 0.400030394438223 Functional Loss - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33586197 chr20:33586200 nonsynonymous SNV 0.103 2 24 hm5C_associated_SNPs_99175 0 0 0 0 1 MYH7B chr20:33586224 5'GT 33586224 Upstream 25bp
chr16 90028179 90028179 1 + C T BLCA 90028176 + 90028156 90028196 41 AGTGAGGCCAGGCAGTGCGACTACACCGGCCAGTACTACTG AGTGAGGCCAGGCAGTGCGACTATACCGGCCAGTACTACTG < 41bp 0.70001299669863 0.469755591051285 0.8962285 0.8687116 prediction 0.400025993397261 Functional Loss - DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028176 chr16:90028179 synonymous SNV . 0 24 hm5C_associated_SNPs_99176 0 0 1 0 2 DEF8 chr16:90028145 3'AG 90028145 Downstream 35bp
chr16 90028179 90028179 1 + C T BLCA 90028176 + 90028156 90028196 41 AGTGAGGCCAGGCAGTGCGACTACACCGGCCAGTACTACTG AGTGAGGCCAGGCAGTGCGACTATACCGGCCAGTACTACTG < 41bp 0.70001299669863 0.469755591051285 0.8962285 0.8687116 prediction 0.400025993397261 Functional Loss - DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028176 chr16:90028179 synonymous SNV . 0 24 hm5C_associated_SNPs_99176 0 0 1 0 2 DEF8 chr16:90028272 5'GT 90028272 Upstream 94bp
chr14 105222017 105222017 1 + G A UCEC 105222014 + 105221994 105222034 41 GGGCCCAGGCCTACCTGGACCACGTGTGGGATGAAGGCTGT GGGCCCAGGCCTACCTGGACCACATGTGGGATGAAGGCTGT < 41bp 0.822188757878132 0.622177487716462 0.29448527 0.30359715 prediction 0.400022540323339 Functional Loss - SIVA1 ENSG00000184990 CDS Human protein_coding chr14:105222014 chr14:105222017 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_99177 0 0 1 0 1 SIVA1 chr14:105221967 3'AG 105221967 Downstream 51bp
chr8 21844713 21844713 1 + G A LUSC 21844710 + 21844690 21844730 41 CCCAGGCGGGTAATGAGAAGCTAGAGTTGGCCATGCTGAGC CCCAGGCGGGTAATGAGAAGCTAAAGTTGGCCATGCTGAGC < 41bp 0.807311406166569 0.607300323378526 0.4720534 0.327958 prediction 0.400022165576088 Functional Loss - XPO7 ENSG00000130227 CDS Human protein_coding chr8:21844710 chr8:21844713 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_99178 0 0 1 0 1 XPO7 chr8:21844787 5'GT 21844787 Upstream 75bp
chr15 37100621 37100621 1 + G A LGG 37100618 + 37100598 37100638 41 CTGCTCAAAGCCTGTTTCCCCACGAACATTGTCACCTTATG CTGCTCAAAGCCTGTTTCCCCACAAACATTGTCACCTTATG < 41bp 0.794718243836754 0.594707701112371 0.22053277 0.100939125 prediction 0.400021085448766 Functional Loss - C15orf41 ENSG00000186073 CDS Human protein_coding chr15:37100618 chr15:37100621 nonsynonymous SNV 0.939 0 24 hm5C_associated_SNPs_99179 0 0 0 0 1 C15orf41 chr15:37100525 3'AG 37100525 Downstream 97bp
chr1 84679893 84679893 1 + C T COAD 84679890 + 84679870 84679910 41 AGGACCTTCTACGGAACCTGCTGCAGGTGGATTTGACCAAG AGGACCTTCTACGGAACCTGCTGTAGGTGGATTTGACCAAG < 41bp 0.795741189061397 0.595731039831018 0.09213987 0.08566886 prediction 0.400020298460759 Functional Loss - PRKACB ENSG00000142875 CDS Human protein_coding chr1:84679890 chr1:84679893 stopgain 1.000 1 24 hm5C_associated_SNPs_99180 0 0 0 0 1 PRKACB chr1:84679836 3'AG 84679836 Downstream 58bp
chr7 5327489 5327489 1 + G A GBM 5327486 + 5327466 5327506 41 CAGCGCCTTGAGGAGCCCAGCGTGGCAGGCACACCAGACCC CAGCGCCTTGAGGAGCCCAGCGTAGCAGGCACACCAGACCC < 41bp 0.700009935412861 0.444392080809719 0.4022532 0.3046124 prediction 0.400019870825722 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5327486 chr7:5327489 synonymous SNV . 0 24 hm5C_associated_SNPs_99181 0 0 1 0 2 SLC29A4 chr7:5327437 3'AG 5327437 Downstream 53bp
chr7 5327489 5327489 1 + G A GBM 5327486 + 5327466 5327506 41 CAGCGCCTTGAGGAGCCCAGCGTGGCAGGCACACCAGACCC CAGCGCCTTGAGGAGCCCAGCGTAGCAGGCACACCAGACCC < 41bp 0.700009935412861 0.444392080809719 0.4022532 0.3046124 prediction 0.400019870825722 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5327486 chr7:5327489 synonymous SNV . 0 24 hm5C_associated_SNPs_99181 0 0 1 0 2 SLC29A4 chr7:5327440 3'AG 5327440 Downstream 50bp
chr7 5327490 5327490 1 + G T LUSC 5327486 + 5327466 5327506 41 CAGCGCCTTGAGGAGCCCAGCGTGGCAGGCACACCAGACCC CAGCGCCTTGAGGAGCCCAGCGTGTCAGGCACACCAGACCC < 41bp 0.700009935412861 0.48136993735521 0.4022532 0.3406765 prediction 0.400019870825722 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5327486 chr7:5327490 nonsynonymous SNV 0.235 0 25 hm5C_associated_SNPs_99182 0 0 1 0 2 SLC29A4 chr7:5327437 3'AG 5327437 Downstream 54bp
chr7 5327490 5327490 1 + G T LUSC 5327486 + 5327466 5327506 41 CAGCGCCTTGAGGAGCCCAGCGTGGCAGGCACACCAGACCC CAGCGCCTTGAGGAGCCCAGCGTGTCAGGCACACCAGACCC < 41bp 0.700009935412861 0.48136993735521 0.4022532 0.3406765 prediction 0.400019870825722 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5327486 chr7:5327490 nonsynonymous SNV 0.235 0 25 hm5C_associated_SNPs_99182 0 0 1 0 2 SLC29A4 chr7:5327440 3'AG 5327440 Downstream 51bp
chr4 3446591 3446591 1 + G T COAD 3446587 + 3446567 3446607 41 TGGGGAACGGCACTGGGTACCGTGGCGTGGCCAGCACCTCA TGGGGAACGGCACTGGGTACCGTGTCGTGGCCAGCACCTCA < 41bp 0.76338035040882 0.563375727266314 0.88258487 0.22317806 prediction 0.400009246285011 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3446587 chr4:3446591 nonsynonymous SNV 0.194 4 25 hm5C_associated_SNPs_99183 0 0 1 0 1 HGFAC chr4:3446546 3'AG 3446546 Downstream 46bp
chr5 132424155 132424155 1 + G T KIRC 132424153 + 132424133 132424173 41 TGGTGGTGCTACACGAATCCCTGCGGTAAAAGAGAAGATCA TGGTGGTGCTACACGAATCCCTTCGGTAAAAGAGAAGATCA < 41bp 0.700003257904273 0.366166607754682 0.089663535 0.04259166 prediction 0.400006515808545 Functional Loss - HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132424153 chr5:132424155 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_99184 0 0 1 0 1 HSPA4 chr5:132424247 5'GT 132424247 Upstream 93bp
chr16 56920317 56920317 1 + C A LUAD 56920313 + 56920293 56920333 41 TCACGGGGCCCCCCAACTTCCGCCCGGCCCTGGTGGACTTT TCACGGGGCCCCCCAACTTCCGCCAGGCCCTGGTGGACTTT < 41bp 0.49755063104338 0.867949015252771 0.1086517 0.40913802 prediction 0.735898030505543 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56920313 chr16:56920317 nonsynonymous SNV 0.852 5 25 hm5C_associated_SNPs_99186 0 0 0 0 2 SLC12A3 chr16:56920276 3'AG 56920276 Downstream 42bp
chr16 56920317 56920317 1 + C A LUAD 56920313 + 56920293 56920333 41 TCACGGGGCCCCCCAACTTCCGCCCGGCCCTGGTGGACTTT TCACGGGGCCCCCCAACTTCCGCCAGGCCCTGGTGGACTTT < 41bp 0.49755063104338 0.867949015252771 0.1086517 0.40913802 prediction 0.735898030505543 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56920313 chr16:56920317 nonsynonymous SNV 0.852 5 25 hm5C_associated_SNPs_99186 0 0 0 0 2 SLC12A3 chr16:56920387 5'GT 56920387 Upstream 71bp
chr14 78397898 78397898 1 + C A MESO 78397894 + 78397874 78397914 41 GCAACAACGCGGCCAACTACCTCCCCCAGATCAGCCATCTC GCAACAACGCGGCCAACTACCTCCACCAGATCAGCCATCTC < 41bp 0.483552329808429 0.867817723330563 0.13441682 0.9401475 prediction 0.735635446661126 Functional Gain - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78397894 chr14:78397898 nonsynonymous SNV 0.982 4 25 hm5C_associated_SNPs_99187 0 0 0 0 1 ADCK1 chr14:78397861 3'AG 78397861 Downstream 38bp
chr19 48284382 48284382 1 + C A COAD 48284378 + 48284358 48284398 41 TCCTCAGTGCGGCGAGGGAACTCCCCAGGCCACCGGGTTCT TCCTCAGTGCGGCGAGGGAACTCCACAGGCCACCGGGTTCT < 41bp 0.497094038515782 0.86759939371329 0.32745096 0.95156604 prediction 0.73519878742658 Functional Gain - SELENOW ENSG00000178980 CDS Human protein_coding chr19:48284378 chr19:48284382 synonymous SNV . 0 25 hm5C_associated_SNPs_99188 0 0 1 0 2 SELENOW chr19:48284365 3'AG 48284365 Downstream 18bp
chr19 48284382 48284382 1 + C A COAD 48284378 + 48284358 48284398 41 TCCTCAGTGCGGCGAGGGAACTCCCCAGGCCACCGGGTTCT TCCTCAGTGCGGCGAGGGAACTCCACAGGCCACCGGGTTCT < 41bp 0.497094038515782 0.86759939371329 0.32745096 0.95156604 prediction 0.73519878742658 Functional Gain - SELENOW ENSG00000178980 CDS Human protein_coding chr19:48284378 chr19:48284382 synonymous SNV . 0 25 hm5C_associated_SNPs_99188 0 0 1 0 2 SELENOW chr19:48284439 5'GT 48284439 Upstream 58bp
chr20 2375157 2375157 1 + C A LUAD 2375153 + 2375133 2375173 41 AGGAATGGCGCTGCCCACCACACCCAGGAGTACCCCTGCCC AGGAATGGCGCTGCCCACCACACCAAGGAGTACCCCTGCCC < 41bp 0.497134182307897 0.865617460851034 0.051035166 0.31029204 prediction 0.731234921702068 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2375153 chr20:2375157 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_99190 0 0 0 0 1 TGM6 chr20:2375098 3'AG 2375098 Downstream 60bp
chr17 15644474 15644474 1 + C A ESCA 15644470 + 15644450 15644490 41 CAGGGACCTGAGCCGCATCACTGCCATCCTCCTCCTGTGTC CAGGGACCTGAGCCGCATCACTGCAATCCTCCTCCTGTGTC < 41bp 0.50578701801663 0.870923144626515 0.15798002 0.383938 prediction 0.730272253219771 Functional Gain - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15644470 chr17:15644474 synonymous SNV . 0 25 hm5C_associated_SNPs_99191 0 0 0 4 2 TBC1D26 chr17:15644436 3'AG 15644436 Downstream 39bp
chr17 15644474 15644474 1 + C A ESCA 15644470 + 15644450 15644490 41 CAGGGACCTGAGCCGCATCACTGCCATCCTCCTCCTGTGTC CAGGGACCTGAGCCGCATCACTGCAATCCTCCTCCTGTGTC < 41bp 0.50578701801663 0.870923144626515 0.15798002 0.383938 prediction 0.730272253219771 Functional Gain - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15644470 chr17:15644474 synonymous SNV . 0 25 hm5C_associated_SNPs_99191 0 0 0 4 2 TBC1D26 chr17:15644555 5'GT 15644555 Upstream 82bp
chr3 51978533 51978533 1 + C A COAD 51978529 + 51978509 51978549 41 AGCGGGACCACTTTGTGTCTCACCCGGGCAAGTACACACTT AGCGGGACCACTTTGTGTCTCACCAGGGCAAGTACACACTT < 41bp 0.499436226387155 0.86475625731098 0.24274221 0.84634656 prediction 0.729512514621961 Functional Gain - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51978529 chr3:51978533 nonsynonymous SNV 0.374 2 25 hm5C_associated_SNPs_99192 0 0 1 0 1 PARP3 chr3:51978594 5'GT 51978594 Upstream 62bp
chr2 27147881 27147881 1 + C A SKCM 27147877 + 27147857 27147897 41 CCCAAGGTCTGCTGTGATTACGCCCTCCACGTGGGGATCAC CCCAAGGTCTGCTGTGATTACGCCATCCACGTGGGGATCAC < 41bp 0.505387168947449 0.869960754165515 0.23699728 0.48597097 prediction 0.729147170436133 Functional Gain - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27147877 chr2:27147881 nonsynonymous SNV 0.969 4 25 hm5C_associated_SNPs_99194 0 0 1 0 1 DPYSL5 chr2:27147913 5'GT 27147913 Upstream 33bp
chr18 72173231 72173231 1 + C A LUSC 72173227 + 72173207 72173247 41 GGCTGGGACAGCGAGCCCTTCACCCTGGTGGAGCGAGACGG GGCTGGGACAGCGAGCCCTTCACCATGGTGGAGCGAGACGG < 41bp 0.495928036349918 0.864237250760593 0.28489125 0.23248833 prediction 0.728474501521187 Functional Gain - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72173227 chr18:72173231 nonsynonymous SNV 0.992 1 25 hm5C_associated_SNPs_99195 0 0 1 0 1 CNDP2 chr18:72173246 5'GT 72173246 Upstream 16bp
chr14 21458471 21458471 1 + C A UCEC 21458467 + 21458447 21458487 41 AGAAGAGGCCTCATCGCCAGCACCCTGGCATCCTAAAGCTG AGAAGAGGCCTCATCGCCAGCACCATGGCATCCTAAAGCTG < 41bp 0.503447612009242 0.867335852013014 0.120527774 0.17084694 prediction 0.727776480007544 Functional Gain - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21458467 chr14:21458471 nonsynonymous SNV 0.616 4 25 hm5C_associated_SNPs_99196 0 0 1 0 2 METTL17 chr14:21458389 3'AG 21458389 Downstream 83bp
chr14 21458471 21458471 1 + C A UCEC 21458467 + 21458447 21458487 41 AGAAGAGGCCTCATCGCCAGCACCCTGGCATCCTAAAGCTG AGAAGAGGCCTCATCGCCAGCACCATGGCATCCTAAAGCTG < 41bp 0.503447612009242 0.867335852013014 0.120527774 0.17084694 prediction 0.727776480007544 Functional Gain - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21458467 chr14:21458471 nonsynonymous SNV 0.616 4 25 hm5C_associated_SNPs_99196 0 0 1 0 2 METTL17 chr14:21458542 5'GT 21458542 Upstream 72bp
chr9 131289797 131289797 1 + C A UCEC 131289793 + 131289773 131289813 41 CATCCCAGTGAGCCAAATCTCTACCATTGCAGGTTGGTCAG CATCCCAGTGAGCCAAATCTCTACAATTGCAGGTTGGTCAG < 41bp 0.510919772971945 0.873891238379822 0.17834008 0.5986419 prediction 0.725942930815753 Functional Gain - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131289793 chr9:131289797 synonymous SNV . 0 25 hm5C_associated_SNPs_99198 0 0 1 0 2 GLE1 chr9:131289735 3'AG 131289735 Downstream 63bp
chr9 131289797 131289797 1 + C A UCEC 131289793 + 131289773 131289813 41 CATCCCAGTGAGCCAAATCTCTACCATTGCAGGTTGGTCAG CATCCCAGTGAGCCAAATCTCTACAATTGCAGGTTGGTCAG < 41bp 0.510919772971945 0.873891238379822 0.17834008 0.5986419 prediction 0.725942930815753 Functional Gain - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131289793 chr9:131289797 synonymous SNV . 0 25 hm5C_associated_SNPs_99198 0 0 1 0 2 GLE1 chr9:131289804 5'GT 131289804 Upstream 8bp
chr16 55525775 55525775 1 + C A SARC 55525771 + 55525751 55525791 41 CACGCCATGGGGCTGGAGCACTCCCAAGACCCTGGGGCCCT CACGCCATGGGGCTGGAGCACTCCAAAGACCCTGGGGCCCT < 41bp 0.46884629231685 0.862803650484194 0.20575368 0.97212243 prediction 0.725607300968389 Functional Gain - MMP2 ENSG00000087245 CDS Human protein_coding chr16:55525771 chr16:55525775 nonsynonymous SNV 0.976 0 25 hm5C_associated_SNPs_99199 0 0 0 0 1 MMP2 chr16:55525868 5'GT 55525868 Upstream 94bp
chr11 45949117 45949117 1 + C A STAD 45949113 + 45949093 45949133 41 TCCTCAGTGACATTGACTTCCTGCCTGCCTATTCTCTCTAC TCCTCAGTGACATTGACTTCCTGCATGCCTATTCTCTCTAC < 41bp 0.493493132124838 0.862672498087225 0.018456519 0.0928154 prediction 0.725344996174451 Functional Gain - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45949113 chr11:45949117 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_99200 0 0 1 0 1 LARGE2 chr11:45949144 5'GT 45949144 Upstream 28bp
chr2 3749189 3749189 1 + C A COAD 3749185 + 3749165 3749205 41 TGATCAGGCAAAAGTGGATTCTCCCGGCCCACAAGTGGAAA TGATCAGGCAAAAGTGGATTCTCCAGGCCCACAAGTGGAAA < 41bp 0.48442739689041 0.862640745476122 0.16875973 0.94655913 prediction 0.725281490952244 Functional Gain - ALLC ENSG00000151360 CDS Human protein_coding chr2:3749185 chr2:3749189 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_99201 0 0 0 0 2 ALLC chr2:3749102 3'AG 3749102 Downstream 88bp
chr2 3749189 3749189 1 + C A COAD 3749185 + 3749165 3749205 41 TGATCAGGCAAAAGTGGATTCTCCCGGCCCACAAGTGGAAA TGATCAGGCAAAAGTGGATTCTCCAGGCCCACAAGTGGAAA < 41bp 0.48442739689041 0.862640745476122 0.16875973 0.94655913 prediction 0.725281490952244 Functional Gain - ALLC ENSG00000151360 CDS Human protein_coding chr2:3749185 chr2:3749189 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_99201 0 0 0 0 2 ALLC chr2:3749226 5'GT 3749226 Upstream 38bp
chr11 15170767 15170767 1 + C A STAD 15170763 + 15170743 15170783 41 GCCACCTGGACTCCGTCACCCTGCCGGGTCAGCGGTAAGTC GCCACCTGGACTCCGTCACCCTGCAGGGTCAGCGGTAAGTC < 41bp 0.500948893441946 0.863372278035106 0.21192697 0.33768222 prediction 0.724846769186321 Functional Gain - INSC ENSG00000188487 CDS Human protein_coding chr11:15170763 chr11:15170767 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_99202 0 0 0 0 2 INSC chr11:15170676 3'AG 15170676 Downstream 92bp
chr11 15170767 15170767 1 + C A STAD 15170763 + 15170743 15170783 41 GCCACCTGGACTCCGTCACCCTGCCGGGTCAGCGGTAAGTC GCCACCTGGACTCCGTCACCCTGCAGGGTCAGCGGTAAGTC < 41bp 0.500948893441946 0.863372278035106 0.21192697 0.33768222 prediction 0.724846769186321 Functional Gain - INSC ENSG00000188487 CDS Human protein_coding chr11:15170763 chr11:15170767 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_99202 0 0 0 0 2 INSC chr11:15170776 5'GT 15170776 Upstream 10bp
chr20 30115332 30115332 1 + C A SARC 30115328 + 30115308 30115348 41 ACAATCACCAGCCGGGATGCCGCCCGCTTCCCCATCATCGC ACAATCACCAGCCGGGATGCCGCCAGCTTCCCCATCATCGC < 41bp 0.484413974660626 0.862315957309795 0.15398163 0.39154643 prediction 0.72463191461959 Functional Gain - HM13 ENSG00000101294 CDS Human protein_coding chr20:30115328 chr20:30115332 nonsynonymous SNV 0.963 1 25 hm5C_associated_SNPs_99203 0 0 1 0 2 HM13 chr20:30115287 3'AG 30115287 Downstream 46bp
chr20 30115332 30115332 1 + C A SARC 30115328 + 30115308 30115348 41 ACAATCACCAGCCGGGATGCCGCCCGCTTCCCCATCATCGC ACAATCACCAGCCGGGATGCCGCCAGCTTCCCCATCATCGC < 41bp 0.484413974660626 0.862315957309795 0.15398163 0.39154643 prediction 0.72463191461959 Functional Gain - HM13 ENSG00000101294 CDS Human protein_coding chr20:30115328 chr20:30115332 nonsynonymous SNV 0.963 1 25 hm5C_associated_SNPs_99203 0 0 1 0 2 HM13 chr20:30115385 5'GT 30115385 Upstream 54bp
chr7 143048740 143048740 1 + C A LUAD 143048736 + 143048716 143048756 41 GTCTGGGGTGCAGCTCCGCCCTCCCCTTGCCAGCTTCCGGA GTCTGGGGTGCAGCTCCGCCCTCCACTTGCCAGCTTCCGGA < 41bp 0.496034167867086 0.861796981180574 0.06886825 0.93016255 prediction 0.723593962361148 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143048736 chr7:143048740 synonymous SNV . 0 25 hm5C_associated_SNPs_99207 0 0 0 0 1 CLCN1 chr7:143048687 3'AG 143048687 Downstream 54bp
chr8 1575027 1575027 1 + C A LUAD 1575023 + 1575003 1575043 41 AGCTACATGAGGGCCGTCAGCACCCTGAGCCAGGCCAGCTG AGCTACATGAGGGCCGTCAGCACCATGAGCCAGGCCAGCTG < 41bp 0.495234111422015 0.861761159918322 0.37406677 0.3689437 prediction 0.723522319836643 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1575023 chr8:1575027 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99208 0 0 0 0 1 DLGAP2 chr8:1575053 5'GT 1575053 Upstream 27bp
chr16 81303986 81303986 1 + C A UCEC 81303982 + 81303962 81304002 41 TCCAGGCTCACCTCGGTCCCCACCCTCAGGAGGTTTGCCGT TCCAGGCTCACCTCGGTCCCCACCATCAGGAGGTTTGCCGT < 41bp 0.484274196019405 0.861621629790538 0.029781908 0.21153426 prediction 0.723243259581076 Functional Gain - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81303982 chr16:81303986 nonsynonymous SNV 0.665 2 25 hm5C_associated_SNPs_99209 0 0 0 0 1 BCO1 chr16:81304021 5'GT 81304021 Upstream 36bp
chr9 82333694 82333694 1 + C A UCEC 82333690 + 82333670 82333710 41 GATGCAGCCTGTCCCTTTTCCACCCGACGCCCTCATCGGAC GATGCAGCCTGTCCCTTTTCCACCAGACGCCCTCATCGGAC < 41bp 0.508930659732808 0.870282986706386 0.102614254 0.11411086 prediction 0.722704653947155 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82333690 chr9:82333694 synonymous SNV . 0 25 hm5C_associated_SNPs_99210 0 0 0 0 1 TLE4 chr9:82333637 3'AG 82333637 Downstream 58bp
chr1 156702098 156702098 1 + C A UCEC 156702094 + 156702074 156702114 41 TACAGGTCAGTGTGGCCACTCACCCTGCTGGCCCTGAAGTC TACAGGTCAGTGTGGCCACTCACCATGCTGGCCCTGAAGTC < 41bp 0.504767635375301 0.865983160768919 0.04272896 0.10593042 prediction 0.722431050787236 Functional Gain - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156702094 chr1:156702098 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_99211 0 0 1 0 1 RRNAD1 chr1:156702073 3'AG 156702073 Downstream 26bp
chr1 205039107 205039107 1 + C A HNSC 205039103 + 205039083 205039123 41 CGAGAGCGTCCGGCCCTACACGCCCTTTGAGGTCAAGATCC CGAGAGCGTCCGGCCCTACACGCCATTTGAGGTCAAGATCC < 41bp 0.509424927834678 0.870439058339203 0.07732433 0.8524568 prediction 0.722028261009049 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205039103 chr1:205039107 synonymous SNV . 0 25 hm5C_associated_SNPs_99212 0 0 0 0 1 CNTN2 chr1:205039189 5'GT 205039189 Upstream 83bp
chr1 32043005 32043005 1 + C A UCEC 32043001 + 32042981 32043021 41 AACCGCACGGTCTCCGACTGCTGCCCTGACTTCTGGGACTT AACCGCACGGTCTCCGACTGCTGCACTGACTTCTGGGACTT < 41bp 0.504056602143523 0.864928915911934 0.07591879 0.10723421 prediction 0.72174462753682 Functional Gain - TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32043001 chr1:32043005 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99214 0 0 0 0 1 TINAGL1 chr1:32043059 5'GT 32043059 Upstream 55bp
chr1 22924315 22924315 1 + C A LUSC 22924311 + 22924291 22924331 41 GCGTCCATCATGGGGCAATTCGACCATCCCAACATCATCCG GCGTCCATCATGGGGCAATTCGACAATCCCAACATCATCCG < 41bp 0.494837180214835 0.860855772975934 0.20560896 0.17845708 prediction 0.721711545951869 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22924311 chr1:22924315 nonsynonymous SNV 0.941 4 25 hm5C_associated_SNPs_99215 0 0 0 0 1 EPHA8 chr1:22924354 5'GT 22924354 Upstream 40bp
chr12 120750736 120750736 1 + C A THCA 120750732 + 120750712 120750752 41 TCACTGCCTGGGAGAAGAAGCTCCCGATTGCAATACTGAAC TCACTGCCTGGGAGAAGAAGCTCCAGATTGCAATACTGAAC < 41bp 0.498716224501615 0.860838933915396 0.14682001 0.90073717 prediction 0.721677867830793 Functional Gain - SIRT4 ENSG00000089163 CDS Human protein_coding chr12:120750732 chr12:120750736 nonsynonymous SNV 0.290 4 25 hm5C_associated_SNPs_99216 0 0 0 0 1 SIRT4 chr12:120750687 3'AG 120750687 Downstream 50bp
chr16 10855685 10855685 1 + C A LUSC 10855681 + 10855661 10855701 41 GTGCCAGGACTTGGAGGTCCCTCTCCTCGGCAGAGTGCCCC GTGCCAGGACTTGGAGGTCCCTCTACTCGGCAGAGTGCCCC < 41bp 0.504445588222435 0.864934737663545 0.058582574 0.57778096 prediction 0.720978298882218 Functional Gain - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10855681 chr16:10855685 synonymous SNV . 0 25 hm5C_associated_SNPs_99218 0 0 0 0 2 NUBP1 chr16:10855614 3'AG 10855614 Downstream 72bp
chr16 10855685 10855685 1 + C A LUSC 10855681 + 10855661 10855701 41 GTGCCAGGACTTGGAGGTCCCTCTCCTCGGCAGAGTGCCCC GTGCCAGGACTTGGAGGTCCCTCTACTCGGCAGAGTGCCCC < 41bp 0.504445588222435 0.864934737663545 0.058582574 0.57778096 prediction 0.720978298882218 Functional Gain - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10855681 chr16:10855685 synonymous SNV . 0 25 hm5C_associated_SNPs_99218 0 0 0 0 2 NUBP1 chr16:10855716 5'GT 10855716 Upstream 32bp
chr11 70028646 70028646 1 + C A LUSC 70028642 + 70028622 70028662 41 CTTCACGTCTGACTTCATCCCGCGCCTGGTGTACCTCTACA CTTCACGTCTGACTTCATCCCGCGACTGGTGTACCTCTACA < 41bp 0.493164788659852 0.860121342853593 0.098676205 0.076497465 prediction 0.720242685707186 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70028642 chr11:70028646 synonymous SNV . 0 25 hm5C_associated_SNPs_99220 0 0 0 0 1 ANO1 chr11:70028608 3'AG 70028608 Downstream 39bp
chr4 37848697 37848697 1 + C A UCEC 37848693 + 37848673 37848713 41 AGCACCGTCTCCTCCAAAATCTTGCGGGCCATTGCCTTAAA AGCACCGTCTCCTCCAAAATCTTGAGGGCCATTGCCTTAAA < 41bp 0.504759388000764 0.864756295604313 0.10931614 0.21490777 prediction 0.719993815207099 Functional Gain - PGM2 ENSG00000169299 CDS Human protein_coding chr4:37848693 chr4:37848697 synonymous SNV . 0 25 hm5C_associated_SNPs_99222 0 0 0 0 1 PGM2 chr4:37848732 5'GT 37848732 Upstream 36bp
chr11 64939756 64939756 1 + C A GBM 64939752 + 64939732 64939772 41 GTGCTGGTCTACTTCCAGCGCGCCCACCTGAAGCTCAGCGA GTGCTGGTCTACTTCCAGCGCGCCAACCTGAAGCTCAGCGA < 41bp 0.486738231658129 0.859957022714065 0.022704035 0.05607733 prediction 0.719914045428129 Functional Gain - SPDYC ENSG00000204710 CDS Human protein_coding chr11:64939752 chr11:64939756 nonsynonymous SNV 0.439 0 25 hm5C_associated_SNPs_99223 0 0 0 0 2 SPDYC chr11:64939717 3'AG 64939717 Downstream 40bp
chr11 64939756 64939756 1 + C A GBM 64939752 + 64939732 64939772 41 GTGCTGGTCTACTTCCAGCGCGCCCACCTGAAGCTCAGCGA GTGCTGGTCTACTTCCAGCGCGCCAACCTGAAGCTCAGCGA < 41bp 0.486738231658129 0.859957022714065 0.022704035 0.05607733 prediction 0.719914045428129 Functional Gain - SPDYC ENSG00000204710 CDS Human protein_coding chr11:64939752 chr11:64939756 nonsynonymous SNV 0.439 0 25 hm5C_associated_SNPs_99223 0 0 0 0 2 SPDYC chr11:64939802 5'GT 64939802 Upstream 47bp
chr17 30625187 30625187 1 + C A rs148089007 30625183 + 30625163 30625203 41 CTGGAGATGGTGCATGGAGCCACCCGAATTGGGCTTGTCTA CTGGAGATGGTGCATGGAGCCACCAGAATTGGGCTTGTCTA < 41bp 0.490506688803499 0.859555584358353 0.070017815 0.13776138 prediction 0.719111168716707 Functional Gain - RHBDL3 ENSG00000141314 CDS Human protein_coding chr17:30625183 chr17:30625187 synonymous SNV . 0 25 hm5C_associated_SNPs_99226 0 0 0 0 2 RHBDL3 chr17:30625111 3'AG 30625111 Downstream 77bp
chr17 30625187 30625187 1 + C A rs148089007 30625183 + 30625163 30625203 41 CTGGAGATGGTGCATGGAGCCACCCGAATTGGGCTTGTCTA CTGGAGATGGTGCATGGAGCCACCAGAATTGGGCTTGTCTA < 41bp 0.490506688803499 0.859555584358353 0.070017815 0.13776138 prediction 0.719111168716707 Functional Gain - RHBDL3 ENSG00000141314 CDS Human protein_coding chr17:30625183 chr17:30625187 synonymous SNV . 0 25 hm5C_associated_SNPs_99226 0 0 0 0 2 RHBDL3 chr17:30625223 5'GT 30625223 Upstream 37bp
chr17 43171121 43171121 1 + C A UCEC 43171117 + 43171097 43171137 41 AATATCCGCCAGGAGCCCTACACCCTGCCCCAGGGCTTCAC AATATCCGCCAGGAGCCCTACACCATGCCCCAGGGCTTCAC < 41bp 0.469825271039437 0.859456370721735 0.050466627 0.066907555 prediction 0.718912741443471 Functional Gain - NMT1 ENSG00000136448 CDS Human protein_coding chr17:43171117 chr17:43171121 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99228 0 0 1 0 2 NMT1 chr17:43171053 3'AG 43171053 Downstream 69bp
chr17 43171121 43171121 1 + C A UCEC 43171117 + 43171097 43171137 41 AATATCCGCCAGGAGCCCTACACCCTGCCCCAGGGCTTCAC AATATCCGCCAGGAGCCCTACACCATGCCCCAGGGCTTCAC < 41bp 0.469825271039437 0.859456370721735 0.050466627 0.066907555 prediction 0.718912741443471 Functional Gain - NMT1 ENSG00000136448 CDS Human protein_coding chr17:43171117 chr17:43171121 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99228 0 0 1 0 2 NMT1 chr17:43171171 5'GT 43171171 Upstream 51bp
chr17 7983170 7983170 1 - G T LUSC 7983174 - 7983154 7983194 41 CCCGGCCTGATCCGCCGCTGCACGCGGATCCCAGACAAGTT CCCGGCCTGATCCGCCGCTGCACGAGGATCCCAGACAAGTT < 41bp 0.494570428859879 0.859390528690551 0.33274412 0.54315805 prediction 0.718781057381101 Functional Gain - ALOX12B ENSG00000179477 CDS Human protein_coding chr17:7983174 chr17:7983170 synonymous SNV . 0 25 hm5C_associated_SNPs_99230 0 0 0 0 1 ALOX12B chr17:7983087 5'GT 7983087 Upstream 84bp
chrX 13607713 13607713 1 + C A LUAD 13607709 + 13607689 13607729 41 GGTTGTTAGCATCGGCACGTCAGCCTGGGGTCTGTCACTAT GGTTGTTAGCATCGGCACGTCAGCATGGGGTCTGTCACTAT < 41bp 0.505480594906634 0.864856746338731 0.14988545 0.30463523 prediction 0.718752302864194 Functional Gain - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13607709 chrX:13607713 nonsynonymous SNV 0.970 2 25 hm5C_associated_SNPs_99231 0 0 0 0 3 EGFL6 chrX:13607675 3'AG 13607675 Downstream 39bp
chrX 13607713 13607713 1 + C A LUAD 13607709 + 13607689 13607729 41 GGTTGTTAGCATCGGCACGTCAGCCTGGGGTCTGTCACTAT GGTTGTTAGCATCGGCACGTCAGCATGGGGTCTGTCACTAT < 41bp 0.505480594906634 0.864856746338731 0.14988545 0.30463523 prediction 0.718752302864194 Functional Gain - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13607709 chrX:13607713 nonsynonymous SNV 0.970 2 25 hm5C_associated_SNPs_99231 0 0 0 0 3 EGFL6 chrX:13607681 3'AG 13607681 Downstream 33bp
chrX 13607713 13607713 1 + C A LUAD 13607709 + 13607689 13607729 41 GGTTGTTAGCATCGGCACGTCAGCCTGGGGTCTGTCACTAT GGTTGTTAGCATCGGCACGTCAGCATGGGGTCTGTCACTAT < 41bp 0.505480594906634 0.864856746338731 0.14988545 0.30463523 prediction 0.718752302864194 Functional Gain - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13607709 chrX:13607713 nonsynonymous SNV 0.970 2 25 hm5C_associated_SNPs_99231 0 0 0 0 3 EGFL6 chrX:13607787 5'GT 13607787 Upstream 75bp
chr12 6632078 6632078 1 + C A GBM 6632074 + 6632054 6632094 41 TGTTTGGGGTGCGCCGTATGCTGCCTCTCATCTGGTCTAAG TGTTTGGGGTGCGCCGTATGCTGCATCTCATCTGGTCTAAG < 41bp 0.486579085918287 0.859155276601548 0.35221893 0.45147935 prediction 0.718310553203096 Functional Gain - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6632074 chr12:6632078 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99232 0 0 1 0 2 NCAPD2 chr12:6631994 3'AG 6631994 Downstream 85bp
chr12 6632078 6632078 1 + C A GBM 6632074 + 6632054 6632094 41 TGTTTGGGGTGCGCCGTATGCTGCCTCTCATCTGGTCTAAG TGTTTGGGGTGCGCCGTATGCTGCATCTCATCTGGTCTAAG < 41bp 0.486579085918287 0.859155276601548 0.35221893 0.45147935 prediction 0.718310553203096 Functional Gain - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6632074 chr12:6632078 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99232 0 0 1 0 2 NCAPD2 chr12:6632168 5'GT 6632168 Upstream 91bp
chr1 12919054 12919054 1 + C A LUAD 12919050 + 12919030 12919070 41 GTGCAGGCCTGGCCTTTCACCTGCCTCCCTCTGGTATCGCT GTGCAGGCCTGGCCTTTCACCTGCATCCCTCTGGTATCGCT < 41bp 0.498810890927462 0.859155052087773 0.18166536 0.22648698 prediction 0.718310104175546 Functional Gain - PRAMEF2 ENSG00000120952 CDS Human protein_coding chr1:12919050 chr1:12919054 nonsynonymous SNV 0.004 4 25 hm5C_associated_SNPs_99233 0 0 0 0 1 PRAMEF2 chr1:12919151 5'GT 12919151 Upstream 98bp
chr1 45268724 45268724 1 + C A rs17880471 45268720 + 45268700 45268740 41 GTTCACTACACGCTGCCTGCCAGCCTCTCACTGCCTGCCCG GTTCACTACACGCTGCCTGCCAGCATCTCACTGCCTGCCCG < 41bp 0.499782027606826 0.858662571739958 0.08532131 0.18132868 prediction 0.717325143479915 Functional Gain - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45268720 chr1:45268724 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_99234 0 0 0 4 1 PLK3 chr1:45268627 3'AG 45268627 Downstream 98bp
chr19 50910271 50910271 1 + C A UCEC 50910267 + 50910247 50910287 41 ACGACCAGACCCGCCGCCGCCTGGCTGTGTACTGCCTGAAG ACGACCAGACCCGCCGCCGCCTGGATGTGTACTGCCTGAAG < 41bp 0.495207468600586 0.85790749775753 0.120147854 0.5528254 prediction 0.71581499551506 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50910267 chr19:50910271 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_99237 0 0 1 0 1 POLD1 chr19:50910240 3'AG 50910240 Downstream 32bp
chr1 46871374 46871374 1 + C A rs72890799 46871370 + 46871350 46871390 41 CCTCATCGGGTCTGGAGGCTCCCCCCTGGGCTTAGGCACTG CCTCATCGGGTCTGGAGGCTCCCCACTGGGCTTAGGCACTG < 41bp 0.495925678855666 0.857888255864699 0.3777182 0.08317882 prediction 0.715776511729397 Functional Gain - FAAH ENSG00000117480 CDS Human protein_coding chr1:46871370 chr1:46871374 synonymous SNV . 0 25 hm5C_associated_SNPs_99238 0 0 0 0 1 FAAH chr1:46871466 5'GT 46871466 Upstream 93bp
chr19 49899075 49899075 1 + C A rs559172057 49899071 + 49899051 49899091 41 GCCTTCCAGGGAGCCCTGACCTCCCGGCAACTGCCATCTGG GCCTTCCAGGGAGCCCTGACCTCCAGGCAACTGCCATCTGG < 41bp 0.468570024778965 0.857735170968208 0.2395294 0.91310465 prediction 0.715470341936416 Functional Gain - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49899071 chr19:49899075 synonymous SNV . 0 25 hm5C_associated_SNPs_99242 0 0 0 0 2 CCDC155 chr19:49899026 3'AG 49899026 Downstream 50bp
chr19 49899075 49899075 1 + C A rs559172057 49899071 + 49899051 49899091 41 GCCTTCCAGGGAGCCCTGACCTCCCGGCAACTGCCATCTGG GCCTTCCAGGGAGCCCTGACCTCCAGGCAACTGCCATCTGG < 41bp 0.468570024778965 0.857735170968208 0.2395294 0.91310465 prediction 0.715470341936416 Functional Gain - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49899071 chr19:49899075 synonymous SNV . 0 25 hm5C_associated_SNPs_99242 0 0 0 0 2 CCDC155 chr19:49899090 5'GT 49899090 Upstream 16bp
chr20 44640353 44640353 1 + C A UCEC 44640349 + 44640329 44640369 41 TGCGCCACCACCGCCAACTACGACCGGGACAAGCTCTTCGG TGCGCCACCACCGCCAACTACGACAGGGACAAGCTCTTCGG < 41bp 0.495621406161621 0.85767653178235 0.28437537 0.5949905 prediction 0.715353063564699 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44640349 chr20:44640353 synonymous SNV . 0 25 hm5C_associated_SNPs_99243 0 0 0 0 1 MMP9 chr20:44640386 5'GT 44640386 Upstream 34bp
chrX 153678083 153678083 1 + C A LUSC 153678079 + 153678059 153678099 41 CAAGGAGGACTTGATCATCCCTCACGTGAGTCCCTTCAGCC CAAGGAGGACTTGATCATCCCTCAAGTGAGTCCCTTCAGCC < 41bp 0.503562389630977 0.860815299936994 0.10458323 0.21925846 prediction 0.714505820612034 Functional Gain - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153678079 chrX:153678083 nonsynonymous SNV 0.282 1 25 hm5C_associated_SNPs_99244 0 0 1 0 2 FAM50A chrX:153678029 3'AG 153678029 Downstream 55bp
chrX 153678083 153678083 1 + C A LUSC 153678079 + 153678059 153678099 41 CAAGGAGGACTTGATCATCCCTCACGTGAGTCCCTTCAGCC CAAGGAGGACTTGATCATCCCTCAAGTGAGTCCCTTCAGCC < 41bp 0.503562389630977 0.860815299936994 0.10458323 0.21925846 prediction 0.714505820612034 Functional Gain - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153678079 chrX:153678083 nonsynonymous SNV 0.282 1 25 hm5C_associated_SNPs_99244 0 0 1 0 2 FAM50A chrX:153678083 5'GT 153678083 Upstream 1bp
chr16 31141854 31141854 1 + C A LIHC 31141850 + 31141830 31141870 41 TCTGACCTGGGCAAGCTCAGCTACCGCAGCTACTGGTCCTG TCTGACCTGGGCAAGCTCAGCTACAGCAGCTACTGGTCCTG < 41bp 0.484753593026648 0.857206888172207 0.22376728 0.8048426 prediction 0.714413776344414 Functional Gain - KAT8 ENSG00000103510 CDS Human protein_coding chr16:31141850 chr16:31141854 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_99245 0 0 1 0 2 KAT8 chr16:31141777 3'AG 31141777 Downstream 78bp
chr16 31141854 31141854 1 + C A LIHC 31141850 + 31141830 31141870 41 TCTGACCTGGGCAAGCTCAGCTACCGCAGCTACTGGTCCTG TCTGACCTGGGCAAGCTCAGCTACAGCAGCTACTGGTCCTG < 41bp 0.484753593026648 0.857206888172207 0.22376728 0.8048426 prediction 0.714413776344414 Functional Gain - KAT8 ENSG00000103510 CDS Human protein_coding chr16:31141850 chr16:31141854 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_99245 0 0 1 0 2 KAT8 chr16:31141927 5'GT 31141927 Upstream 74bp
chr1 186934631 186934631 1 + C A UCEC 186934627 + 186934607 186934647 41 ACAGTGGGCTCACATTTAACCTGCCGTATCCCTTGATACTG ACAGTGGGCTCACATTTAACCTGCAGTATCCCTTGATACTG < 41bp 0.497017775001747 0.857133806434516 0.39834514 0.3017531 prediction 0.714267612869031 Functional Gain - PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186934627 chr1:186934631 nonsynonymous SNV 0.978 4 25 hm5C_associated_SNPs_99246 0 0 0 0 2 PLA2G4A chr1:186934541 3'AG 186934541 Downstream 91bp
chr1 186934631 186934631 1 + C A UCEC 186934627 + 186934607 186934647 41 ACAGTGGGCTCACATTTAACCTGCCGTATCCCTTGATACTG ACAGTGGGCTCACATTTAACCTGCAGTATCCCTTGATACTG < 41bp 0.497017775001747 0.857133806434516 0.39834514 0.3017531 prediction 0.714267612869031 Functional Gain - PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186934627 chr1:186934631 nonsynonymous SNV 0.978 4 25 hm5C_associated_SNPs_99246 0 0 0 0 2 PLA2G4A chr1:186934725 5'GT 186934725 Upstream 95bp
chr19 41094595 41094595 1 + C A MESO 41094591 + 41094571 41094611 41 CGCTTCCGCGGCATGATTTCCACCCAGCCCGGCTCCACCCC CGCTTCCGCGGCATGATTTCCACCAAGCCCGGCTCCACCCC < 41bp 0.524815115009158 0.881593910243754 0.012596607 0.036183894 prediction 0.713557590469193 Functional Gain - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41094591 chr19:41094595 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_99250 0 0 1 0 2 SHKBP1 chr19:41094530 3'AG 41094530 Downstream 66bp
chr19 41094595 41094595 1 + C A MESO 41094591 + 41094571 41094611 41 CGCTTCCGCGGCATGATTTCCACCCAGCCCGGCTCCACCCC CGCTTCCGCGGCATGATTTCCACCAAGCCCGGCTCCACCCC < 41bp 0.524815115009158 0.881593910243754 0.012596607 0.036183894 prediction 0.713557590469193 Functional Gain - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41094591 chr19:41094595 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_99250 0 0 1 0 2 SHKBP1 chr19:41094685 5'GT 41094685 Upstream 91bp
chr2 26502071 26502071 1 + C A UCEC 26502067 + 26502047 26502087 41 CTCTGCAGACCGACTGGCCGCTGCCTTTGCTGTTTCTCGGC CTCTGCAGACCGACTGGCCGCTGCATTTGCTGTTTCTCGGC < 41bp 0.519263219063867 0.87594443627508 0.09597275 0.28898704 prediction 0.713362434422426 Functional Gain - HADHB ENSG00000138029 CDS Human protein_coding chr2:26502067 chr2:26502071 synonymous SNV . 0 25 hm5C_associated_SNPs_99251 0 0 1 0 1 HADHB chr2:26502003 3'AG 26502003 Downstream 69bp
chr3 113342545 113342545 1 + C A LUSC 113342541 + 113342521 113342561 41 ACCGCTGTGATGTGGGCTGCCGCCCTATATTTTTTCTTCCA ACCGCTGTGATGTGGGCTGCCGCCATATATTTTTTCTTCCA < 41bp 0.487722833433488 0.85649382178124 0.036833674 0.246963 prediction 0.71298764356248 Functional Gain - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113342541 chr3:113342545 nonsynonymous SNV 0.686 2 25 hm5C_associated_SNPs_99252 0 0 0 0 2 SIDT1 chr3:113342470 3'AG 113342470 Downstream 76bp
chr3 113342545 113342545 1 + C A LUSC 113342541 + 113342521 113342561 41 ACCGCTGTGATGTGGGCTGCCGCCCTATATTTTTTCTTCCA ACCGCTGTGATGTGGGCTGCCGCCATATATTTTTTCTTCCA < 41bp 0.487722833433488 0.85649382178124 0.036833674 0.246963 prediction 0.71298764356248 Functional Gain - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113342541 chr3:113342545 nonsynonymous SNV 0.686 2 25 hm5C_associated_SNPs_99252 0 0 0 0 2 SIDT1 chr3:113342580 5'GT 113342580 Upstream 36bp
chr22 29692342 29692342 1 + C A THCA 29692338 + 29692318 29692358 41 AGACCCACCCACTGCCAAGGCTGCCGTGGAATGGTTTGATG AGACCCACCCACTGCCAAGGCTGCAGTGGAATGGTTTGATG < 41bp 0.512426528762489 0.868681241869838 0.14245933 0.14424375 prediction 0.712509426214697 Functional Gain - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29692338 chr22:29692342 synonymous SNV . 0 25 hm5C_associated_SNPs_99254 0 0 1 0 1 EWSR1 chr22:29692358 5'GT 29692358 Upstream 17bp
chr11 125476316 125476316 1 + C A STAD 125476312 + 125476292 125476332 41 GTGGCCTACTGTACTGTTTACTGCCTGGGCACTATACTTTC GTGGCCTACTGTACTGTTTACTGCATGGGCACTATACTTTC < 41bp 0.512800548147884 0.869043816427435 0.055101573 0.30244538 prediction 0.712486536559103 Functional Gain - STT3A ENSG00000134910 CDS Human protein_coding chr11:125476312 chr11:125476316 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99255 0 0 1 0 1 STT3A chr11:125476360 5'GT 125476360 Upstream 45bp
chr11 67352198 67352198 1 + C A SKCM 67352194 + 67352174 67352214 41 AAGTTCCAGGACGGAGACCTCACCCTGTACCAGTCCAATAC AAGTTCCAGGACGGAGACCTCACCATGTACCAGTCCAATAC < 41bp 0.514298350718963 0.870489636904943 0.16740692 0.24128473 prediction 0.71238257237196 Functional Gain - GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67352194 chr11:67352198 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99256 0 0 1 0 2 GSTP1 chr11:67352156 3'AG 67352156 Downstream 43bp
chr11 67352198 67352198 1 + C A SKCM 67352194 + 67352174 67352214 41 AAGTTCCAGGACGGAGACCTCACCCTGTACCAGTCCAATAC AAGTTCCAGGACGGAGACCTCACCATGTACCAGTCCAATAC < 41bp 0.514298350718963 0.870489636904943 0.16740692 0.24128473 prediction 0.71238257237196 Functional Gain - GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67352194 chr11:67352198 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99256 0 0 1 0 2 GSTP1 chr11:67352243 5'GT 67352243 Upstream 46bp
chr19 3739035 3739035 1 + C A UCEC 3739031 + 3739011 3739051 41 GTGCTGGACACGCTGCACCCCGGCCCCGGGCAGAGCCACGC GTGCTGGACACGCTGCACCCCGGCACCGGGCAGAGCCACGC < 41bp 0.495101306184603 0.856031814740146 0.21278268 0.19345388 prediction 0.712063629480291 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3739031 chr19:3739035 nonsynonymous SNV 0.011 0 25 hm5C_associated_SNPs_99257 0 0 0 0 1 TJP3 chr19:3739132 5'GT 3739132 Upstream 98bp
chr2 238419308 238419308 1 + C A UCEC 238419304 + 238419284 238419324 41 AACGAGACCCACTGCGCCCGCTGCCTGCAGCCCTACCAGCT AACGAGACCCACTGCGCCCGCTGCATGCAGCCCTACCAGCT < 41bp 0.483200301355891 0.856002479926345 0.08328667 0.22402674 prediction 0.712004959852691 Functional Gain - MLPH ENSG00000115648 CDS Human protein_coding chr2:238419304 chr2:238419308 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_99258 0 0 0 0 1 MLPH chr2:238419217 3'AG 238419217 Downstream 92bp
chrX 135572327 135572327 1 + C A OV 135572323 + 135572303 135572343 41 TTGTGAAGCCACTTGAGCGACAGCCCTCCAATGCCATCCTG TTGTGAAGCCACTTGAGCGACAGCACTCCAATGCCATCCTG < 41bp 0.503952823323954 0.859800759325891 0.02183035 0.03953865 prediction 0.711695872003874 Functional Gain - BRS3 ENSG00000102239 CDS Human protein_coding chrX:135572323 chrX:135572327 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_99261 0 0 0 0 1 BRS3 chrX:135572292 3'AG 135572292 Downstream 36bp
chr2 65480940 65480940 1 + C A OV 65480936 + 65480916 65480956 41 CAGTATATGAAGGCTTTTCTCTCCCTCATCTTACCAGGAGA CAGTATATGAAGGCTTTTCTCTCCATCATCTTACCAGGAGA < 41bp 0.488931371662808 0.855539819532598 0.77485895 0.9616853 prediction 0.711079639065196 Functional Gain - ACTR2 ENSG00000138071 CDS Human protein_coding chr2:65480936 chr2:65480940 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_99264 0 0 0 0 2 ACTR2 chr2:65480862 3'AG 65480862 Downstream 79bp
chr2 65480940 65480940 1 + C A OV 65480936 + 65480916 65480956 41 CAGTATATGAAGGCTTTTCTCTCCCTCATCTTACCAGGAGA CAGTATATGAAGGCTTTTCTCTCCATCATCTTACCAGGAGA < 41bp 0.488931371662808 0.855539819532598 0.77485895 0.9616853 prediction 0.711079639065196 Functional Gain - ACTR2 ENSG00000138071 CDS Human protein_coding chr2:65480936 chr2:65480940 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_99264 0 0 0 0 2 ACTR2 chr2:65480998 5'GT 65480998 Upstream 59bp
chr2 234851360 234851360 1 + C A STAD 234851356 + 234851336 234851376 41 GCAGCTTGGGGCATGGTCTCCAACCGGGACACCCTCATCAG GCAGCTTGGGGCATGGTCTCCAACAGGGACACCCTCATCAG < 41bp 0.489807674781529 0.855483357547385 0.37056637 0.30761752 prediction 0.71096671509477 Functional Gain - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234851356 chr2:234851360 synonymous SNV . 0 25 hm5C_associated_SNPs_99266 0 0 0 0 1 TRPM8 chr2:234851392 5'GT 234851392 Upstream 33bp
chr17 58506771 58506771 1 + C A LUAD 58506767 + 58506747 58506787 41 CCGGAGAGGTCCTTGCTGGCCGACCGGGAAGACAGTCTGCC CCGGAGAGGTCCTTGCTGGCCGACAGGGAAGACAGTCTGCC < 41bp 0.503164942997115 0.858523981567209 0.2837518 0.289266 prediction 0.710718077140188 Functional Gain - C17orf64 ENSG00000141371 CDS Human protein_coding chr17:58506767 chr17:58506771 synonymous SNV . 0 25 hm5C_associated_SNPs_99267 0 0 0 0 1 C17orf64 chr17:58506723 3'AG 58506723 Downstream 49bp
chr3 128973548 128973548 1 + C A UCEC 128973544 + 128973524 128973564 41 ATGACTGGGAAAGAAGACAACTACCGGGGCCCGGCCGTGCG ATGACTGGGAAAGAAGACAACTACAGGGGCCCGGCCGTGCG < 41bp 0.472957717925774 0.85532656279227 0.022619575 0.7802942 prediction 0.71065312558454 Functional Gain - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128973544 chr3:128973548 synonymous SNV . 0 25 hm5C_associated_SNPs_99268 0 0 1 0 2 COPG1 chr3:128973511 3'AG 128973511 Downstream 38bp
chr3 128973548 128973548 1 + C A UCEC 128973544 + 128973524 128973564 41 ATGACTGGGAAAGAAGACAACTACCGGGGCCCGGCCGTGCG ATGACTGGGAAAGAAGACAACTACAGGGGCCCGGCCGTGCG < 41bp 0.472957717925774 0.85532656279227 0.022619575 0.7802942 prediction 0.71065312558454 Functional Gain - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128973544 chr3:128973548 synonymous SNV . 0 25 hm5C_associated_SNPs_99268 0 0 1 0 2 COPG1 chr3:128973586 5'GT 128973586 Upstream 39bp
chr1 15789268 15789268 1 + C A LGG 15789264 + 15789244 15789284 41 CGCGTGGGGCTGGGCCGGCACAACCTCTACGTTGCGGAGTC CGCGTGGGGCTGGGCCGGCACAACATCTACGTTGCGGAGTC < 41bp 0.489331947482185 0.855234304731525 0.04637155 0.12386307 prediction 0.710468609463049 Functional Gain - CELA2A ENSG00000142615 CDS Human protein_coding chr1:15789264 chr1:15789268 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_99269 0 0 0 0 1 CELA2A chr1:15789228 3'AG 15789228 Downstream 41bp
chr9 135919225 135919225 1 + C A rs150056568 135919221 + 135919201 135919241 41 CCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCCGCTCTA CCCGAGAAGGAGGCCTTTTTCCACAAGGAGCTGCCGCTCTA < 41bp 0.480046974348366 0.855181245041019 0.1984326 0.31640247 prediction 0.710362490082039 Functional Gain - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919221 chr9:135919225 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_99270 0 0 1 0 1 GTF3C5 chr9:135919313 5'GT 135919313 Upstream 89bp
chr16 88780174 88780174 1 + C A COAD 88780170 + 88780150 88780190 41 CGTTCCTTCTGTCTTCACACCAGCCGTCGACACCAAGGTGG CGTTCCTTCTGTCTTCACACCAGCAGTCGACACCAAGGTGG < 41bp 0.496660710905461 0.855042696893158 0.081940025 0.09355843 prediction 0.710085393786316 Functional Gain - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88780170 chr16:88780174 synonymous SNV . 0 25 hm5C_associated_SNPs_99272 0 0 1 0 1 CTU2 chr16:88780186 5'GT 88780186 Upstream 13bp
chr1 230903376 230903376 1 + C A HNSC 230903372 + 230903352 230903392 41 GGGGTGTGGCAGAGACCTTCCAAACTAAAGAGGCCCCCGAG GGGGTGTGGCAGAGACCTTCCAAAATAAAGAGGCCCCCGAG < 41bp 0.490765360298865 0.854776483311277 0.2753255 0.3766057 prediction 0.709552966622554 Functional Gain - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230903372 chr1:230903376 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_99273 0 0 0 0 2 CAPN9 chr1:230903287 3'AG 230903287 Downstream 90bp
chr1 230903376 230903376 1 + C A HNSC 230903372 + 230903352 230903392 41 GGGGTGTGGCAGAGACCTTCCAAACTAAAGAGGCCCCCGAG GGGGTGTGGCAGAGACCTTCCAAAATAAAGAGGCCCCCGAG < 41bp 0.490765360298865 0.854776483311277 0.2753255 0.3766057 prediction 0.709552966622554 Functional Gain - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230903372 chr1:230903376 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_99273 0 0 0 0 2 CAPN9 chr1:230903455 5'GT 230903455 Upstream 80bp
chrX 107310331 107310331 1 + C A LUAD 107310327 + 107310307 107310347 41 AACAACCCCCCAGACTTTCTCGGCCAAAACCAAGGCATCCT AACAACCCCCCAGACTTTCTCGGCAAAAACCAAGGCATCCT < 41bp 0.483807664275416 0.854611246042487 0.87464976 0.8646945 prediction 0.709222492084974 Functional Gain - VSIG1 ENSG00000101842 CDS Human protein_coding chrX:107310327 chrX:107310331 nonsynonymous SNV 0.600 0 25 hm5C_associated_SNPs_99275 0 0 0 0 1 VSIG1 chrX:107310364 5'GT 107310364 Upstream 34bp
chr13 25283596 25283596 1 + C A rs2289909 25283592 + 25283572 25283612 41 ATAAGGACAGGCTGGTGAACCAGCCGCTCGCTGTGTACTCA ATAAGGACAGGCTGGTGAACCAGCAGCTCGCTGTGTACTCA < 41bp 0.485958551754546 0.854573624858502 0.20439222 0.21995941 prediction 0.709147249717003 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25283592 chr13:25283596 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_99276 0 0 0 0 2 ATP12A chr13:25283502 3'AG 25283502 Downstream 95bp
chr13 25283596 25283596 1 + C A rs2289909 25283592 + 25283572 25283612 41 ATAAGGACAGGCTGGTGAACCAGCCGCTCGCTGTGTACTCA ATAAGGACAGGCTGGTGAACCAGCAGCTCGCTGTGTACTCA < 41bp 0.485958551754546 0.854573624858502 0.20439222 0.21995941 prediction 0.709147249717003 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25283592 chr13:25283596 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_99276 0 0 0 0 2 ATP12A chr13:25283625 5'GT 25283625 Upstream 30bp
chr10 43606745 43606745 1 + C A rs151148041 43606741 + 43606721 43606761 41 TCCTCTGGTGCCAACTGCAGCACGCTAGGGGTGGTCACCTC TCCTCTGGTGCCAACTGCAGCACGATAGGGGTGGTCACCTC < 41bp 0.480850828747641 0.854484775342732 0.35338295 0.4062781 prediction 0.708969550685464 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43606741 chr10:43606745 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_99278 1 0 0 0 1 RET chr10:43606655 3'AG 43606655 Downstream 91bp
chr3 119219634 119219634 1 + C A GBM 119219630 + 119219610 119219650 41 GCTGGGTGTATGGGGGAATACCAGCTTTTATTCATGCTAAA GCTGGGTGTATGGGGGAATACCAGATTTTATTCATGCTAAA < 41bp 0.500952915768669 0.855424727724955 0.33309004 0.5054564 prediction 0.708943623912571 Functional Gain - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119219630 chr3:119219634 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99279 0 0 1 4 2 TIMMDC1 chr3:119219542 3'AG 119219542 Downstream 93bp
chr3 119219634 119219634 1 + C A GBM 119219630 + 119219610 119219650 41 GCTGGGTGTATGGGGGAATACCAGCTTTTATTCATGCTAAA GCTGGGTGTATGGGGGAATACCAGATTTTATTCATGCTAAA < 41bp 0.500952915768669 0.855424727724955 0.33309004 0.5054564 prediction 0.708943623912571 Functional Gain - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119219630 chr3:119219634 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99279 0 0 1 4 2 TIMMDC1 chr3:119219707 5'GT 119219707 Upstream 74bp
chr7 5269284 5269284 1 + C A UCEC 5269280 + 5269260 5269300 41 GACCAATGAGATCTTGGACTCTGCCTCTCACGACTGCCCCT GACCAATGAGATCTTGGACTCTGCATCTCACGACTGCCCCT < 41bp 0.510435346281198 0.864757668450207 0.06968632 0.21299633 prediction 0.708644644338018 Functional Gain - WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5269280 chr7:5269284 synonymous SNV . 0 25 hm5C_associated_SNPs_99280 0 0 1 0 3 WIPI2 chr7:5269239 3'AG 5269239 Downstream 46bp
chr7 5269284 5269284 1 + C A UCEC 5269280 + 5269260 5269300 41 GACCAATGAGATCTTGGACTCTGCCTCTCACGACTGCCCCT GACCAATGAGATCTTGGACTCTGCATCTCACGACTGCCCCT < 41bp 0.510435346281198 0.864757668450207 0.06968632 0.21299633 prediction 0.708644644338018 Functional Gain - WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5269280 chr7:5269284 synonymous SNV . 0 25 hm5C_associated_SNPs_99280 0 0 1 0 3 WIPI2 chr7:5269336 5'GT 5269336 Upstream 53bp
chr7 5269284 5269284 1 + C A UCEC 5269280 + 5269260 5269300 41 GACCAATGAGATCTTGGACTCTGCCTCTCACGACTGCCCCT GACCAATGAGATCTTGGACTCTGCATCTCACGACTGCCCCT < 41bp 0.510435346281198 0.864757668450207 0.06968632 0.21299633 prediction 0.708644644338018 Functional Gain - WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5269280 chr7:5269284 synonymous SNV . 0 25 hm5C_associated_SNPs_99280 0 0 1 0 3 WIPI2 chr7:5269369 5'GT 5269369 Upstream 86bp
chr1 75622664 75622664 1 + C A LUAD 75622660 + 75622640 75622680 41 CACCCCAGTCACAGCAGTCCCACCCTCCAGGCTGTCTCCAC CACCCCAGTCACAGCAGTCCCACCATCCAGGCTGTCTCCAC < 41bp 0.473836579116171 0.854295245369862 0.03861901 0.13847065 prediction 0.708590490739724 Functional Gain - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75622660 chr1:75622664 synonymous SNV . 0 25 hm5C_associated_SNPs_99281 0 0 0 0 2 LHX8 chr1:75622578 3'AG 75622578 Downstream 87bp
chr1 75622664 75622664 1 + C A LUAD 75622660 + 75622640 75622680 41 CACCCCAGTCACAGCAGTCCCACCCTCCAGGCTGTCTCCAC CACCCCAGTCACAGCAGTCCCACCATCCAGGCTGTCTCCAC < 41bp 0.473836579116171 0.854295245369862 0.03861901 0.13847065 prediction 0.708590490739724 Functional Gain - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75622660 chr1:75622664 synonymous SNV . 0 25 hm5C_associated_SNPs_99281 0 0 0 0 2 LHX8 chr1:75622761 5'GT 75622761 Upstream 98bp
chr9 139874454 139874454 1 + C A COAD 139874450 + 139874430 139874470 41 GAGACCGACTACGACCAGTACGCGCTGCTGTACAGCCAGGG GAGACCGACTACGACCAGTACGCGATGCTGTACAGCCAGGG < 41bp 0.50418798372935 0.858451333737864 0.2782734 0.50426084 prediction 0.708526700017028 Functional Gain - PTGDS ENSG00000107317 CDS Human protein_coding chr9:139874450 chr9:139874454 nonsynonymous SNV 0.004 2 25 hm5C_associated_SNPs_99282 0 0 0 0 2 PTGDS chr9:139874398 3'AG 139874398 Downstream 57bp
chr9 139874454 139874454 1 + C A COAD 139874450 + 139874430 139874470 41 GAGACCGACTACGACCAGTACGCGCTGCTGTACAGCCAGGG GAGACCGACTACGACCAGTACGCGATGCTGTACAGCCAGGG < 41bp 0.50418798372935 0.858451333737864 0.2782734 0.50426084 prediction 0.708526700017028 Functional Gain - PTGDS ENSG00000107317 CDS Human protein_coding chr9:139874450 chr9:139874454 nonsynonymous SNV 0.004 2 25 hm5C_associated_SNPs_99282 0 0 0 0 2 PTGDS chr9:139874514 5'GT 139874514 Upstream 61bp
chr19 41727860 41727860 1 + C A STAD 41727856 + 41727836 41727876 41 CCCCCTTCAACCTGAGCTGCCAAGCTCAGGGACCCCCAGAG CCCCCTTCAACCTGAGCTGCCAAGATCAGGGACCCCCAGAG < 41bp 0.500298773353658 0.85443005007911 0.2982909 0.23035356 prediction 0.708262553450903 Functional Gain - AXL ENSG00000167601 CDS Human protein_coding chr19:41727856 chr19:41727860 nonsynonymous SNV 0.983 4 25 hm5C_associated_SNPs_99283 0 0 0 0 1 AXL chr19:41727785 3'AG 41727785 Downstream 76bp
chr3 138668431 138668431 1 + C A LUAD 138668427 + 138668407 138668447 41 TGGGAAGGGCTGGAATCGGTCTCCCCAAGATGTGCCTTCAC TGGGAAGGGCTGGAATCGGTCTCCACAAGATGTGCCTTCAC < 41bp 0.478955817019815 0.854121634176814 0.2118868 0.93776405 prediction 0.708243268353629 Functional Gain - FOXL2NB ENSG00000206262 CDS Human protein_coding chr3:138668427 chr3:138668431 nonsynonymous SNV 0.004 3 25 hm5C_associated_SNPs_99284 0 0 0 0 2 FOXL2NB chr3:138668354 3'AG 138668354 Downstream 78bp
chr3 138668431 138668431 1 + C A LUAD 138668427 + 138668407 138668447 41 TGGGAAGGGCTGGAATCGGTCTCCCCAAGATGTGCCTTCAC TGGGAAGGGCTGGAATCGGTCTCCACAAGATGTGCCTTCAC < 41bp 0.478955817019815 0.854121634176814 0.2118868 0.93776405 prediction 0.708243268353629 Functional Gain - FOXL2NB ENSG00000206262 CDS Human protein_coding chr3:138668427 chr3:138668431 nonsynonymous SNV 0.004 3 25 hm5C_associated_SNPs_99284 0 0 0 0 2 FOXL2NB chr3:138668362 3'AG 138668362 Downstream 70bp
chr21 43979141 43979141 1 + C A STAD 43979137 + 43979117 43979157 41 ACCCGAACCACGTCGTCATTCTCCCCGGGGACGGTGGGAGT ACCCGAACCACGTCGTCATTCTCCACGGGGACGGTGGGAGT < 41bp 0.464182467565147 0.854100859963802 0.17242593 0.9166002 prediction 0.708201719927605 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43979137 chr21:43979141 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_99286 0 0 1 0 2 SLC37A1 chr21:43979068 3'AG 43979068 Downstream 74bp
chr21 43979141 43979141 1 + C A STAD 43979137 + 43979117 43979157 41 ACCCGAACCACGTCGTCATTCTCCCCGGGGACGGTGGGAGT ACCCGAACCACGTCGTCATTCTCCACGGGGACGGTGGGAGT < 41bp 0.464182467565147 0.854100859963802 0.17242593 0.9166002 prediction 0.708201719927605 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43979137 chr21:43979141 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_99286 0 0 1 0 2 SLC37A1 chr21:43979199 5'GT 43979199 Upstream 59bp
chr11 67187016 67187016 1 + C A LUSC 67187012 + 67186992 67187032 41 GGCGGCAGGCATGGCGTCTGCACCCGCGGGCAGAGCTGGGT GGCGGCAGGCATGGCGTCTGCACCAGCGGGCAGAGCTGGGT < 41bp 0.488561601564249 0.853999510705844 0.29636252 0.7011071 prediction 0.707999021411688 Functional Gain - CARNS1 ENSG00000172508;ENSG00000172531 CDS Human other chr11:67187012 chr11:67187016 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_99287 0 0 0 0 1 CARNS1 chr11:67186958 3'AG 67186958 Downstream 59bp
chr11 69462787 69462787 1 + C A LIHC 69462783 + 69462763 69462803 41 TGTGAAGTTCATTTCCAATCCGCCCTCCATGGTGGCAGCGG TGTGAAGTTCATTTCCAATCCGCCATCCATGGTGGCAGCGG < 41bp 0.482144745070986 0.853903675858515 0.05725667 0.35146368 prediction 0.707807351717031 Functional Gain - CCND1 ENSG00000110092 CDS Human protein_coding chr11:69462783 chr11:69462787 synonymous SNV . 0 25 hm5C_associated_SNPs_99290 0 0 1 0 1 CCND1 chr11:69462762 3'AG 69462762 Downstream 26bp
chr4 113575287 113575287 1 + C A UCEC 113575283 + 113575263 113575303 41 ATAGACAGGCAAAACTTAATCAGCCTCGGGAAAAGAAAAGA ATAGACAGGCAAAACTTAATCAGCATCGGGAAAAGAAAAGA < 41bp 0.494212840532246 0.853887938481817 0.14744443 0.16763914 prediction 0.707775876963635 Functional Gain - LARP7 ENSG00000174720 CDS Human protein_coding chr4:113575283 chr4:113575287 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99291 0 0 1 0 2 LARP7 chr4:113575224 3'AG 113575224 Downstream 64bp
chr4 113575287 113575287 1 + C A UCEC 113575283 + 113575263 113575303 41 ATAGACAGGCAAAACTTAATCAGCCTCGGGAAAAGAAAAGA ATAGACAGGCAAAACTTAATCAGCATCGGGAAAAGAAAAGA < 41bp 0.494212840532246 0.853887938481817 0.14744443 0.16763914 prediction 0.707775876963635 Functional Gain - LARP7 ENSG00000174720 CDS Human protein_coding chr4:113575283 chr4:113575287 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99291 0 0 1 0 2 LARP7 chr4:113575315 5'GT 113575315 Upstream 29bp
chr17 12887896 12887896 1 + C A STAD 12887892 + 12887872 12887912 41 CACCCAAGGTCCCCTTTGGCCAGCCGGGGGCTATGGCAGAC CACCCAAGGTCCCCTTTGGCCAGCAGGGGGCTATGGCAGAC < 41bp 0.496395760455613 0.853882630771096 0.36845386 0.48055774 prediction 0.707765261542191 Functional Gain - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12887892 chr17:12887896 nonsynonymous SNV 0.841 0 25 hm5C_associated_SNPs_99292 0 0 0 0 1 ARHGAP44 chr17:12887848 3'AG 12887848 Downstream 49bp
chr16 818455 818455 1 + C A LUSC 818451 + 818431 818471 41 TGAAGGCGGAGGAGCGGCACCGCCCGGTGCGGGACTGGATC TGAAGGCGGAGGAGCGGCACCGCCAGGTGCGGGACTGGATC < 41bp 0.496080463573976 0.853713216042334 0.11862144 0.90606874 prediction 0.707426432084669 Functional Gain - MSLN ENSG00000102854 CDS Human protein_coding chr16:818451 chr16:818455 nonsynonymous SNV 0.004 2 25 hm5C_associated_SNPs_99294 0 0 1 0 1 MSLN chr16:818379 3'AG 818379 Downstream 77bp
chr20 48431585 48431585 1 + C A UCEC 48431581 + 48431561 48431601 41 ACTCATGAGGGTTTCAATGTCACCCTCCACACCACCCTGGT ACTCATGAGGGTTTCAATGTCACCATCCACACCACCCTGGT < 41bp 0.476137217222424 0.853545995303205 0.014580339 0.027998984 prediction 0.70709199060641 Functional Gain - SLC9A8 ENSG00000197818 CDS Human protein_coding chr20:48431581 chr20:48431585 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_99298 0 0 0 0 1 SLC9A8 chr20:48431545 3'AG 48431545 Downstream 41bp
chr19 4945945 4945945 1 + C A UCEC 4945941 + 4945921 4945961 41 CGGAGCAACGACGGAGCGTACTCCCTAGTCCTGGCGGGGGG CGGAGCAACGACGGAGCGTACTCCATAGTCCTGGCGGGGGG < 41bp 0.477456460693922 0.853529603849615 0.1304718 0.9462006 prediction 0.70705920769923 Functional Gain - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4945941 chr19:4945945 . 0.098 3 25 hm5C_associated_SNPs_99299 0 0 1 0 2 UHRF1 chr19:4945873 3'AG 4945873 Downstream 73bp
chr19 4945945 4945945 1 + C A UCEC 4945941 + 4945921 4945961 41 CGGAGCAACGACGGAGCGTACTCCCTAGTCCTGGCGGGGGG CGGAGCAACGACGGAGCGTACTCCATAGTCCTGGCGGGGGG < 41bp 0.477456460693922 0.853529603849615 0.1304718 0.9462006 prediction 0.70705920769923 Functional Gain - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4945941 chr19:4945945 . 0.098 3 25 hm5C_associated_SNPs_99299 0 0 1 0 2 UHRF1 chr19:4945977 5'GT 4945977 Upstream 33bp
chr6 160819053 160819053 1 + C A OV 160819049 + 160819029 160819069 41 AATGCGTGGATGCTGGACCTCACCCAAGCCATCCTGAACCT AATGCGTGGATGCTGGACCTCACCAAAGCCATCCTGAACCT < 41bp 0.463706633472302 0.853513614447202 0.05337438 0.4749177 prediction 0.707027228894404 Functional Gain - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160819049 chr6:160819053 nonsynonymous SNV 0.980 2 25 hm5C_associated_SNPs_99300 0 0 1 0 2 SLC22A3 chr6:160819011 3'AG 160819011 Downstream 43bp
chr6 160819053 160819053 1 + C A OV 160819049 + 160819029 160819069 41 AATGCGTGGATGCTGGACCTCACCCAAGCCATCCTGAACCT AATGCGTGGATGCTGGACCTCACCAAAGCCATCCTGAACCT < 41bp 0.463706633472302 0.853513614447202 0.05337438 0.4749177 prediction 0.707027228894404 Functional Gain - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160819049 chr6:160819053 nonsynonymous SNV 0.980 2 25 hm5C_associated_SNPs_99300 0 0 1 0 2 SLC22A3 chr6:160819114 5'GT 160819114 Upstream 62bp
chr19 38869929 38869929 1 + C A STAD 38869925 + 38869905 38869945 41 ATGCACCAGCTCTTGGGCCTCAACCTCCTCTTCCTGCTGTC ATGCACCAGCTCTTGGGCCTCAACATCCTCTTCCTGCTGTC < 41bp 0.489679381422267 0.853503304197839 0.097905934 0.04524839 prediction 0.707006608395677 Functional Gain - PSMD8 ENSG00000099341 CDS Human protein_coding chr19:38869925 chr19:38869929 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_99301 0 0 1 0 1 PSMD8 chr19:38869880 3'AG 38869880 Downstream 50bp
chr1 171174711 171174711 1 + C A LUAD 171174707 + 171174687 171174727 41 TCGCGTGCATTGGTCTCATCCAGCCCCTAGGTTCCATTTTC TCGCGTGCATTGGTCTCATCCAGCACCTAGGTTCCATTTTC < 41bp 0.494555428636859 0.853450355256494 0.19151214 0.16352385 prediction 0.706900710512989 Functional Gain - FMO2 ENSG00000094963 CDS Human protein_coding chr1:171174707 chr1:171174711 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_99302 0 0 0 0 1 FMO2 chr1:171174773 5'GT 171174773 Upstream 63bp
chr6 108497939 108497939 1 + C A ESCA 108497935 + 108497915 108497955 41 CGTGAGCCTGGCTCAGCCCACGCCCAAGGTCAGCGGCCTTG CGTGAGCCTGGCTCAGCCCACGCCAAAGGTCAGCGGCCTTG < 41bp 0.520290703117933 0.873611878250007 0.0804258 0.6853126 prediction 0.706642350264148 Functional Gain - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108497935 chr6:108497939 synonymous SNV . 0 25 hm5C_associated_SNPs_99303 0 0 0 0 1 NR2E1 chr6:108497942 5'GT 108497942 Upstream 4bp
chr6 160557647 160557647 1 + C A UCEC 160557643 + 160557623 160557663 41 TGCAGACCTGTTCCGCACGCCGCGCCTGAGGAAGCGCACCT TGCAGACCTGTTCCGCACGCCGCGACTGAGGAAGCGCACCT < 41bp 0.481096350326902 0.853097373019187 0.018477082 0.054733932 prediction 0.706194746038373 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160557643 chr6:160557647 synonymous SNV . 0 25 hm5C_associated_SNPs_99307 0 0 0 0 2 SLC22A1 chr6:160557576 3'AG 160557576 Downstream 72bp
chr6 160557647 160557647 1 + C A UCEC 160557643 + 160557623 160557663 41 TGCAGACCTGTTCCGCACGCCGCGCCTGAGGAAGCGCACCT TGCAGACCTGTTCCGCACGCCGCGACTGAGGAAGCGCACCT < 41bp 0.481096350326902 0.853097373019187 0.018477082 0.054733932 prediction 0.706194746038373 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160557643 chr6:160557647 synonymous SNV . 0 25 hm5C_associated_SNPs_99307 0 0 0 0 2 SLC22A1 chr6:160557682 5'GT 160557682 Upstream 36bp
chr1 32741979 32741979 1 + C A LGG 32741975 + 32741955 32741995 41 TGCACACGGTTGAGCCGCCCCTGCCAGACCCAGAAGCCCCA TGCACACGGTTGAGCCGCCCCTGCAAGACCCAGAAGCCCCA < 41bp 0.473200328868295 0.852985552143066 0.041584343 0.13986447 prediction 0.705971104286133 Functional Gain - LCK ENSG00000182866 CDS Human protein_coding chr1:32741975 chr1:32741979 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_99308 0 0 1 0 1 LCK chr1:32741938 3'AG 32741938 Downstream 42bp
chr11 36422827 36422827 1 + C A BLCA 36422823 + 36422803 36422843 41 TCTGCAGCTGAGCTCCAGCTCAGCCTGGAACAGGTGAAGGA TCTGCAGCTGAGCTCCAGCTCAGCATGGAACAGGTGAAGGA < 41bp 0.49410810490915 0.852655973293874 0.32304785 0.5326803 prediction 0.705311946587747 Functional Gain - PRR5L ENSG00000135362 CDS Human protein_coding chr11:36422823 chr11:36422827 synonymous SNV . 0 25 hm5C_associated_SNPs_99309 0 0 0 0 1 PRR5L chr11:36422835 5'GT 36422835 Upstream 9bp
chr12 52309921 52309921 1 + C A LIHC 52309917 + 52309897 52309937 41 ATGGCACCCGAGGTGCTGGACGAGCAGATCCGCACGGACTG ATGGCACCCGAGGTGCTGGACGAGAAGATCCGCACGGACTG < 41bp 0.495040956212021 0.852646656057546 0.3570996 0.53587306 prediction 0.705293312115091 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309917 chr12:52309921 nonsynonymous SNV 0.251 2 25 hm5C_associated_SNPs_99310 0 0 0 0 1 ACVRL1 chr12:52310017 5'GT 52310017 Upstream 97bp
chr12 3390387 3390387 1 + C A UCEC 3390383 + 3390363 3390403 41 GATGCGATGCTGTGGTGTCACTGACTACACAGACTGGTACC GATGCGATGCTGTGGTGTCACTGAATACACAGACTGGTACC < 41bp 0.51139562806815 0.863941574975575 0.026426107 0.07197082 prediction 0.705091893814851 Functional Gain - TSPAN9 ENSG00000011105 CDS Human protein_coding chr12:3390383 chr12:3390387 nonsynonymous SNV 0.695 2 25 hm5C_associated_SNPs_99311 0 0 1 0 1 TSPAN9 chr12:3390364 3'AG 3390364 Downstream 24bp
chr5 161113315 161113315 1 + C A UCEC 161113311 + 161113291 161113331 41 GTCAGTCGGATCCTGGACAACTTGCTTGAAGGCTATGACAA GTCAGTCGGATCCTGGACAACTTGATTGAAGGCTATGACAA < 41bp 0.485863409500326 0.852494660008654 0.1602276 0.1635685 prediction 0.704989320017308 Functional Gain - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161113311 chr5:161113315 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_99312 0 0 0 0 2 GABRA6 chr5:161113236 3'AG 161113236 Downstream 80bp
chr5 161113315 161113315 1 + C A UCEC 161113311 + 161113291 161113331 41 GTCAGTCGGATCCTGGACAACTTGCTTGAAGGCTATGACAA GTCAGTCGGATCCTGGACAACTTGATTGAAGGCTATGACAA < 41bp 0.485863409500326 0.852494660008654 0.1602276 0.1635685 prediction 0.704989320017308 Functional Gain - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161113311 chr5:161113315 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_99312 0 0 0 0 2 GABRA6 chr5:161113354 5'GT 161113354 Upstream 40bp
chr6 88046794 88046794 1 + C A SKCM 88046790 + 88046770 88046810 41 TCCAACATTCAAAAAGGAACCACCCAAAGAGAAAGAGTTTC TCCAACATTCAAAAAGGAACCACCAAAAGAGAAAGAGTTTC < 41bp 0.512151228498768 0.864605779903837 0.0112020075 0.043556184 prediction 0.704909102810138 Functional Gain - SMIM8 ENSG00000111850;ENSG00000226524 CDS Human other chr6:88046790 chr6:88046794 synonymous SNV . 0 25 hm5C_associated_SNPs_99313 0 0 1 0 2 SMIM8 chr6:88046727 3'AG 88046727 Downstream 68bp
chr6 88046794 88046794 1 + C A SKCM 88046790 + 88046770 88046810 41 TCCAACATTCAAAAAGGAACCACCCAAAGAGAAAGAGTTTC TCCAACATTCAAAAAGGAACCACCAAAAGAGAAAGAGTTTC < 41bp 0.512151228498768 0.864605779903837 0.0112020075 0.043556184 prediction 0.704909102810138 Functional Gain - SMIM8 ENSG00000111850;ENSG00000226524 CDS Human other chr6:88046790 chr6:88046794 synonymous SNV . 0 25 hm5C_associated_SNPs_99313 0 0 1 0 2 SMIM8 chr6:88046884 5'GT 88046884 Upstream 91bp
chr10 98092351 98092351 1 + C A SKCM 98092347 + 98092327 98092367 41 GCCCTGTTGGGATGGACTGGCTCCCGGGTAAGTGCTACATG GCCCTGTTGGGATGGACTGGCTCCAGGGTAAGTGCTACATG < 41bp 0.520518993735698 0.872916882730876 0.09980005 0.9070497 prediction 0.704795777990357 Functional Gain - DNTT ENSG00000107447 CDS Human protein_coding chr10:98092347 chr10:98092351 synonymous SNV . 0 25 hm5C_associated_SNPs_99314 0 0 0 0 1 DNTT chr10:98092353 5'GT 98092353 Upstream 3bp
chr11 85610047 85610047 1 + C A STAD 85610043 + 85610023 85610063 41 CTAGAGATCTGGGAGAATGACTGGCTCAAAAAAGAGGTAAG CTAGAGATCTGGGAGAATGACTGGATCAAAAAAGAGGTAAG < 41bp 0.494823713037811 0.852314335380532 0.34901792 0.44664356 prediction 0.704628670761064 Functional Gain - CCDC83 ENSG00000150676 CDS Human protein_coding chr11:85610043 chr11:85610047 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99317 0 0 0 0 2 CCDC83 chr11:85609990 3'AG 85609990 Downstream 58bp
chr11 85610047 85610047 1 + C A STAD 85610043 + 85610023 85610063 41 CTAGAGATCTGGGAGAATGACTGGCTCAAAAAAGAGGTAAG CTAGAGATCTGGGAGAATGACTGGATCAAAAAAGAGGTAAG < 41bp 0.494823713037811 0.852314335380532 0.34901792 0.44664356 prediction 0.704628670761064 Functional Gain - CCDC83 ENSG00000150676 CDS Human protein_coding chr11:85610043 chr11:85610047 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99317 0 0 0 0 2 CCDC83 chr11:85610058 5'GT 85610058 Upstream 12bp
chr16 20476855 20476855 1 + C A SKCM 20476851 + 20476831 20476871 41 TTCCTCAGGCTGGCAAGCGACTCCCAAGCCCAGCCCTGTGG TTCCTCAGGCTGGCAAGCGACTCCAAAGCCCAGCCCTGTGG < 41bp 0.472555413727614 0.85230853103957 0.40316585 0.9743562 prediction 0.70461706207914 Functional Gain - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20476851 chr16:20476855 nonsynonymous SNV 0.060 1 25 hm5C_associated_SNPs_99318 0 0 0 0 1 ACSM2A chr16:20476839 3'AG 20476839 Downstream 17bp
chr21 43987140 43987140 1 + T G LGG 43987137 + 43987117 43987157 41 CCTGGTCAGTGGGCCCTACACACTCATCACCACCGCCGTCT CCTGGTCAGTGGGCCCTACACACGCATCACCACCGCCGTCT < 41bp 0.502566934346341 0.854781933005021 0.034337223 0.22284892 prediction 0.70442999731736 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43987137 chr21:43987140 nonsynonymous SNV 0.469 4 24 hm5C_associated_SNPs_99320 0 0 0 0 2 SLC37A1 chr21:43987095 3'AG 43987095 Downstream 46bp
chr21 43987140 43987140 1 + T G LGG 43987137 + 43987117 43987157 41 CCTGGTCAGTGGGCCCTACACACTCATCACCACCGCCGTCT CCTGGTCAGTGGGCCCTACACACGCATCACCACCGCCGTCT < 41bp 0.502566934346341 0.854781933005021 0.034337223 0.22284892 prediction 0.70442999731736 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43987137 chr21:43987140 nonsynonymous SNV 0.469 4 24 hm5C_associated_SNPs_99320 0 0 0 0 2 SLC37A1 chr21:43987168 5'GT 43987168 Upstream 29bp
chr15 48413351 48413351 1 + C A LUSC 48413347 + 48413327 48413367 41 GGACCTCCCTGCCCCAACGTCTCCCAAGGGCCACAGGTAGG GGACCTCCCTGCCCCAACGTCTCCAAAGGGCCACAGGTAGG < 41bp 0.480335273461207 0.852182090380201 0.16673458 0.9753649 prediction 0.704364180760403 Functional Gain - SLC24A5 ENSG00000188467 CDS Human protein_coding chr15:48413347 chr15:48413351 nonsynonymous SNV 0.982 1 25 hm5C_associated_SNPs_99321 0 0 0 0 1 SLC24A5 chr15:48413362 5'GT 48413362 Upstream 12bp
chr16 2203001 2203001 1 + C A UCEC 2202997 + 2202977 2203017 41 GTGCCTGGGCCAGGTGGACTCTGCCCATGAGCGTGTGGTGA GTGCCTGGGCCAGGTGGACTCTGCACATGAGCGTGTGGTGA < 41bp 0.507214560731091 0.859321653205733 0.1079801 0.62208015 prediction 0.704214184949284 Functional Gain - RAB26 ENSG00000167964 CDS Human protein_coding chr16:2202997 chr16:2203001 synonymous SNV . 0 25 hm5C_associated_SNPs_99323 0 0 0 0 2 RAB26 chr16:2202990 3'AG 2202990 Downstream 12bp
chr16 2203001 2203001 1 + C A UCEC 2202997 + 2202977 2203017 41 GTGCCTGGGCCAGGTGGACTCTGCCCATGAGCGTGTGGTGA GTGCCTGGGCCAGGTGGACTCTGCACATGAGCGTGTGGTGA < 41bp 0.507214560731091 0.859321653205733 0.1079801 0.62208015 prediction 0.704214184949284 Functional Gain - RAB26 ENSG00000167964 CDS Human protein_coding chr16:2202997 chr16:2203001 synonymous SNV . 0 25 hm5C_associated_SNPs_99323 0 0 0 0 2 RAB26 chr16:2203046 5'GT 2203046 Upstream 46bp
chr15 78390803 78390803 1 + C A STAD 78390799 + 78390779 78390819 41 CGTGGACCCAGAAAACCCACCTGCCACGGCATTCCTCACAG CGTGGACCCAGAAAACCCACCTGCAACGGCATTCCTCACAG < 41bp 0.476410261564332 0.852098626715108 0.10310382 0.32579213 prediction 0.704197253430216 Functional Gain - SH2D7 ENSG00000183476 CDS Human protein_coding chr15:78390799 chr15:78390803 synonymous SNV . 0 25 hm5C_associated_SNPs_99324 0 0 0 0 1 SH2D7 chr15:78390726 3'AG 78390726 Downstream 78bp
chr16 20432686 20432686 1 + C A HNSC 20432682 + 20432662 20432702 41 GCCCCCAAGATGGTCGAGCACTCCCAGAGCAGCTACGGACT GCCCCCAAGATGGTCGAGCACTCCAAGAGCAGCTACGGACT < 41bp 0.544011970795628 0.896057509208068 0.17937365 0.95348597 prediction 0.70409107682488 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20432682 chr16:20432686 nonsynonymous SNV 0.941 1 25 hm5C_associated_SNPs_99325 0 0 0 0 1 ACSM5 chr16:20432723 5'GT 20432723 Upstream 38bp
chr5 23522821 23522821 1 + C A LUAD 23522817 + 23522797 23522837 41 GCAGTGGACAAGGGGCACCCCAACCGTTCAGCCCTCAGTCT GCAGTGGACAAGGGGCACCCCAACAGTTCAGCCCTCAGTCT < 41bp 0.518412982835407 0.870355723869391 0.04470241 0.048091352 prediction 0.703885482067968 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23522817 chr5:23522821 nonsynonymous SNV 0.025 1 25 hm5C_associated_SNPs_99327 0 0 0 0 1 PRDM9 chr5:23522723 3'AG 23522723 Downstream 99bp
chr17 80680707 80680707 1 + C A LUSC 80680703 + 80680683 80680723 41 GAGGAGGTGGGCAGGAGGAACGGCCCTTTGTGGCCCGGTTT GAGGAGGTGGGCAGGAGGAACGGCACTTTGTGGCCCGGTTT < 41bp 0.499326937947756 0.851937597999771 0.87601805 0.8741534 prediction 0.703875195999542 Functional Gain - FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80680703 chr17:80680707 nonsynonymous SNV 0.027 0 25 hm5C_associated_SNPs_99328 0 0 1 0 2 FN3KRP chr17:80680680 3'AG 80680680 Downstream 28bp
chr17 80680707 80680707 1 + C A LUSC 80680703 + 80680683 80680723 41 GAGGAGGTGGGCAGGAGGAACGGCCCTTTGTGGCCCGGTTT GAGGAGGTGGGCAGGAGGAACGGCACTTTGTGGCCCGGTTT < 41bp 0.499326937947756 0.851937597999771 0.87601805 0.8741534 prediction 0.703875195999542 Functional Gain - FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80680703 chr17:80680707 nonsynonymous SNV 0.027 0 25 hm5C_associated_SNPs_99328 0 0 1 0 2 FN3KRP chr17:80680762 5'GT 80680762 Upstream 56bp
chr3 46939575 46939575 1 + C A rs143863124 46939571 + 46939551 46939591 41 CATGGACCTGCAGGCCATGCCTACCGACGCTGTGACCGCAA CATGGACCTGCAGGCCATGCCTACAGACGCTGTGACCGCAA < 41bp 0.479251868476645 0.851913462381981 0.052235574 0.8825135 prediction 0.703826924763962 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46939571 chr3:46939575 synonymous SNV . 0 25 hm5C_associated_SNPs_99329 2 0 0 0 1 PTH1R chr3:46939564 3'AG 46939564 Downstream 12bp
chr17 35736170 35736170 1 + C A COAD 35736166 + 35736146 35736186 41 TCTGACAGCAAAGTAAAAGTCAACCTTGTATATTTGGAGAG TCTGACAGCAAAGTAAAAGTCAACATTGTATATTTGGAGAG < 41bp 0.505426328074791 0.857316656507327 0.066429436 0.13493714 prediction 0.703780656865073 Functional Gain - C17orf78 ENSG00000167230 CDS Human other chr17:35736166 chr17:35736170 nonsynonymous SNV 0.375 0 25 hm5C_associated_SNPs_99330 0 0 0 0 1 C17orf78 chr17:35736075 3'AG 35736075 Downstream 96bp
chr20 32341223 32341223 1 + C A STAD 32341219 + 32341199 32341239 41 ACTGGGGATGCAGCCCTACCCACCCCTAGAGGTGAGCAGAG ACTGGGGATGCAGCCCTACCCACCACTAGAGGTGAGCAGAG < 41bp 0.526649014539888 0.878538554798555 0.15023896 0.2952702 prediction 0.703779080517335 Functional Gain - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32341219 chr20:32341223 synonymous SNV . 0 25 hm5C_associated_SNPs_99331 0 0 1 2 1 ZNF341 chr20:32341229 5'GT 32341229 Upstream 7bp
chr8 99169923 99169923 1 + C A rs111665863 99169919 + 99169899 99169939 41 TAGTCGGGGAGGCCGGCGAGCTCCCGGCAGAGGCCAGCAAG TAGTCGGGGAGGCCGGCGAGCTCCAGGCAGAGGCCAGCAAG < 41bp 0.504194054409554 0.855868059844332 0.36325818 0.78118527 prediction 0.703348010869558 Functional Gain - POP1 ENSG00000104356 CDS Human protein_coding chr8:99169919 chr8:99169923 synonymous SNV . 0 25 hm5C_associated_SNPs_99336 0 0 0 0 1 POP1 chr8:99169845 3'AG 99169845 Downstream 79bp
chr19 50912082 50912082 1 + C A UCEC 50912078 + 50912058 50912098 41 ATCGCCACCCTGGACTTCTCCTCGCTGTACCCGTCCATCAT ATCGCCACCCTGGACTTCTCCTCGATGTACCCGTCCATCAT < 41bp 0.531495463761901 0.882945106446535 0.15249625 0.28382155 prediction 0.702899285369267 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912078 chr19:50912082 nonsynonymous SNV 0.937 4 25 hm5C_associated_SNPs_99337 0 0 1 0 2 POLD1 chr19:50912042 3'AG 50912042 Downstream 41bp
chr19 50912082 50912082 1 + C A UCEC 50912078 + 50912058 50912098 41 ATCGCCACCCTGGACTTCTCCTCGCTGTACCCGTCCATCAT ATCGCCACCCTGGACTTCTCCTCGATGTACCCGTCCATCAT < 41bp 0.531495463761901 0.882945106446535 0.15249625 0.28382155 prediction 0.702899285369267 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912078 chr19:50912082 nonsynonymous SNV 0.937 4 25 hm5C_associated_SNPs_99337 0 0 1 0 2 POLD1 chr19:50912158 5'GT 50912158 Upstream 77bp
chr20 9496716 9496716 1 + C A rs2232264 9496712 + 9496692 9496732 41 GTGAAGGGCCGCTGTGGCCACAGCCAGTCGGAGCTGCAAGT GTGAAGGGCCGCTGTGGCCACAGCAAGTCGGAGCTGCAAGT < 41bp 0.514685898185219 0.865988795648253 0.4585716 0.4651755 prediction 0.702605794926068 Functional Gain - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9496712 chr20:9496716 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_99340 0 0 0 0 2 LAMP5 chr20:9496647 3'AG 9496647 Downstream 70bp
chr20 9496716 9496716 1 + C A rs2232264 9496712 + 9496692 9496732 41 GTGAAGGGCCGCTGTGGCCACAGCCAGTCGGAGCTGCAAGT GTGAAGGGCCGCTGTGGCCACAGCAAGTCGGAGCTGCAAGT < 41bp 0.514685898185219 0.865988795648253 0.4585716 0.4651755 prediction 0.702605794926068 Functional Gain - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9496712 chr20:9496716 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_99340 0 0 0 0 2 LAMP5 chr20:9496778 5'GT 9496778 Upstream 63bp
chrX 16142460 16142460 1 + C A UCEC 16142456 + 16142436 16142476 41 GCTTACCTCTGTTGGGGTGTCTGTCTTCACACTCACGGCGC GCTTACCTCTGTTGGGGTGTCTGTATTCACACTCACGGCGC < 41bp 0.503268649993082 0.854510486827416 0.15686873 0.31365114 prediction 0.702483673668667 Functional Gain - GRPR ENSG00000126010 CDS Human protein_coding chrX:16142456 chrX:16142460 synonymous SNV . 0 25 hm5C_associated_SNPs_99341 0 0 0 0 1 GRPR chrX:16142489 5'GT 16142489 Upstream 30bp
chr3 50197135 50197135 1 + C A READ 50197131 + 50197111 50197151 41 CCTTCCCCACCCAGGACCACCTCCCGGCCACGCCCCGGGTC CCTTCCCCACCCAGGACCACCTCCAGGCCACGCCCCGGGTC < 41bp 0.466468882295922 0.851218226032007 0.46377406 0.9628401 prediction 0.702436452064014 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50197131 chr3:50197135 nonsynonymous SNV 0.015 0 25 hm5C_associated_SNPs_99342 0 0 0 0 1 SEMA3F chr3:50197167 5'GT 50197167 Upstream 33bp
chr11 67160160 67160160 1 + C A UCEC 67160156 + 67160136 67160176 41 GACGGTGAACTCCTCCCGCTCTGCCTATGCCTGCTTTCTCT GACGGTGAACTCCTCCCGCTCTGCATATGCCTGCTTTCTCT < 41bp 0.473296089693013 0.851182459261263 0.21291807 0.88305616 prediction 0.702364918522525 Functional Gain - RAD9A ENSG00000172613 CDS Human protein_coding chr11:67160156 chr11:67160160 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_99343 0 0 1 0 2 RAD9A chr11:67160125 3'AG 67160125 Downstream 36bp
chr11 67160160 67160160 1 + C A UCEC 67160156 + 67160136 67160176 41 GACGGTGAACTCCTCCCGCTCTGCCTATGCCTGCTTTCTCT GACGGTGAACTCCTCCCGCTCTGCATATGCCTGCTTTCTCT < 41bp 0.473296089693013 0.851182459261263 0.21291807 0.88305616 prediction 0.702364918522525 Functional Gain - RAD9A ENSG00000172613 CDS Human protein_coding chr11:67160156 chr11:67160160 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_99343 0 0 1 0 2 RAD9A chr11:67160253 5'GT 67160253 Upstream 94bp
chr5 110819778 110819778 1 + C A LUAD 110819774 + 110819754 110819794 41 CGCCTGGGAAGTGCCAGCAGCAGCCATGGCAGCATCCAGGA CGCCTGGGAAGTGCCAGCAGCAGCAATGGCAGCATCCAGGA < 41bp 0.505608634219399 0.856619510374374 0.21694478 0.27165896 prediction 0.702021752309951 Functional Gain - CAMK4 ENSG00000152495 CDS Human protein_coding chr5:110819774 chr5:110819778 nonsynonymous SNV 0.969 1 25 hm5C_associated_SNPs_99344 0 0 0 0 1 CAMK4 chr5:110819724 3'AG 110819724 Downstream 55bp
chr19 5746053 5746053 1 + C A LUAD 5746049 + 5746029 5746069 41 CTGCTCCTATGGTTTGAGAACAGCCTGTTGTTTTCCCATAA CTGCTCCTATGGTTTGAGAACAGCATGTTGTTTTCCCATAA < 41bp 0.49117547546546 0.850979637521715 0.15102988 0.24757662 prediction 0.70195927504343 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5746049 chr19:5746053 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_99345 0 0 0 0 1 CATSPERD chr19:5746074 5'GT 5746074 Upstream 22bp
chr12 6559767 6559767 1 + C A COAD 6559763 + 6559743 6559783 41 CTCTGGCTGACTTCAGGCAGCTGCCTGCCCGGACTCTCTCT CTCTGGCTGACTTCAGGCAGCTGCATGCCCGGACTCTCTCT < 41bp 0.482456307803838 0.850908119147419 0.1988526 0.43437812 prediction 0.701816238294839 Functional Gain - CD27 ENSG00000139193 CDS Human protein_coding chr12:6559763 chr12:6559767 nonsynonymous SNV 0.054 3 25 hm5C_associated_SNPs_99347 0 0 0 0 2 CD27 chr12:6559707 3'AG 6559707 Downstream 61bp
chr12 6559767 6559767 1 + C A COAD 6559763 + 6559743 6559783 41 CTCTGGCTGACTTCAGGCAGCTGCCTGCCCGGACTCTCTCT CTCTGGCTGACTTCAGGCAGCTGCATGCCCGGACTCTCTCT < 41bp 0.482456307803838 0.850908119147419 0.1988526 0.43437812 prediction 0.701816238294839 Functional Gain - CD27 ENSG00000139193 CDS Human protein_coding chr12:6559763 chr12:6559767 nonsynonymous SNV 0.054 3 25 hm5C_associated_SNPs_99347 0 0 0 0 2 CD27 chr12:6559796 5'GT 6559796 Upstream 30bp
chr10 43870995 43870995 1 + C A LIHC 43870991 + 43870971 43871011 41 GACTGATCTGCGGAGGGCTCCTGGCCATTGCTGGGATCGCG GACTGATCTGCGGAGGGCTCCTGGACATTGCTGGGATCGCG < 41bp 0.507133409263428 0.858010721971368 0.18939379 0.4133793 prediction 0.701754625415879 Functional Gain - FXYD4 ENSG00000150201 CDS Human protein_coding chr10:43870991 chr10:43870995 nonsynonymous SNV 0.017 1 25 hm5C_associated_SNPs_99348 0 0 0 0 2 FXYD4 chr10:43870947 3'AG 43870947 Downstream 49bp
chr10 43870995 43870995 1 + C A LIHC 43870991 + 43870971 43871011 41 GACTGATCTGCGGAGGGCTCCTGGCCATTGCTGGGATCGCG GACTGATCTGCGGAGGGCTCCTGGACATTGCTGGGATCGCG < 41bp 0.507133409263428 0.858010721971368 0.18939379 0.4133793 prediction 0.701754625415879 Functional Gain - FXYD4 ENSG00000150201 CDS Human protein_coding chr10:43870991 chr10:43870995 nonsynonymous SNV 0.017 1 25 hm5C_associated_SNPs_99348 0 0 0 0 2 FXYD4 chr10:43871021 5'GT 43871021 Upstream 27bp
chr7 120969825 120969825 1 + C A rs17143291 120969821 + 120969801 120969841 41 CATGATCACCGCCGCCGCCACTACCGCCCCGATGGGCGCCA CATGATCACCGCCGCCGCCACTACAGCCCCGATGGGCGCCA < 41bp 0.524737711545784 0.875540341701643 0.29954246 0.6775212 prediction 0.701605260311717 Functional Gain - WNT16 ENSG00000002745 CDS Human protein_coding chr7:120969821 chr7:120969825 synonymous SNV . 0 25 hm5C_associated_SNPs_99349 0 0 0 0 1 WNT16 chr7:120969871 5'GT 120969871 Upstream 47bp
chr1 32051407 32051407 1 + C A UCEC 32051403 + 32051383 32051423 41 CTATACAAGGGAGGCATCTACAGCCACACGCCAGTGAGCCT CTATACAAGGGAGGCATCTACAGCAACACGCCAGTGAGCCT < 41bp 0.5195186710117 0.870303529273066 0.5537148 0.19227985 prediction 0.701569716522733 Functional Gain - TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32051403 chr1:32051407 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_99351 0 0 1 0 1 TINAGL1 chr1:32051354 3'AG 32051354 Downstream 54bp
chr22 31658603 31658603 1 + C A rs575869944 31658599 + 31658579 31658619 41 AGGTGGAGGATGCAATTAGCCAGACGAGCCAGACACTTCAG AGGTGGAGGATGCAATTAGCCAGAAGAGCCAGACACTTCAG < 41bp 0.506346995542716 0.856971979221618 0.53635806 0.63213104 prediction 0.701249967357804 Functional Gain - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31658599 chr22:31658603 nonsynonymous SNV 0.986 4 25 hm5C_associated_SNPs_99353 0 0 1 0 1 LIMK2 chr22:31658581 3'AG 31658581 Downstream 23bp
chr1 84876615 84876615 1 + C A SARC 84876611 + 84876591 84876631 41 GGAAGAAGGCTATGATTATCCACCCACAGGGAGACGAAATG GGAAGAAGGCTATGATTATCCACCAACAGGGAGACGAAATG < 41bp 0.531609149000014 0.882230565010019 0.011490643 0.019293457 prediction 0.701242832020009 Functional Gain - DNASE2B ENSG00000137976 CDS Human protein_coding chr1:84876611 chr1:84876615 synonymous SNV . 0 25 hm5C_associated_SNPs_99354 0 0 0 0 3 DNASE2B chr1:84876521 3'AG 84876521 Downstream 95bp
chr1 84876615 84876615 1 + C A SARC 84876611 + 84876591 84876631 41 GGAAGAAGGCTATGATTATCCACCCACAGGGAGACGAAATG GGAAGAAGGCTATGATTATCCACCAACAGGGAGACGAAATG < 41bp 0.531609149000014 0.882230565010019 0.011490643 0.019293457 prediction 0.701242832020009 Functional Gain - DNASE2B ENSG00000137976 CDS Human protein_coding chr1:84876611 chr1:84876615 synonymous SNV . 0 25 hm5C_associated_SNPs_99354 0 0 0 0 3 DNASE2B chr1:84876682 5'GT 84876682 Upstream 68bp
chr1 84876615 84876615 1 + C A SARC 84876611 + 84876591 84876631 41 GGAAGAAGGCTATGATTATCCACCCACAGGGAGACGAAATG GGAAGAAGGCTATGATTATCCACCAACAGGGAGACGAAATG < 41bp 0.531609149000014 0.882230565010019 0.011490643 0.019293457 prediction 0.701242832020009 Functional Gain - DNASE2B ENSG00000137976 CDS Human protein_coding chr1:84876611 chr1:84876615 synonymous SNV . 0 25 hm5C_associated_SNPs_99354 0 0 0 0 3 DNASE2B chr1:84876693 5'GT 84876693 Upstream 79bp
chr11 20623156 20623156 1 + C A rs1443549 20623152 + 20623132 20623172 41 TGAGCCAGAGCACCGTGGTGCTGGCCACGGATGGAATCACG TGAGCCAGAGCACCGTGGTGCTGGACACGGATGGAATCACG < 41bp 0.492098493986519 0.85047084614412 0.36946535 0.43650895 prediction 0.70094169228824 Functional Gain - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20623152 chr11:20623156 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_99357 0 0 0 0 1 SLC6A5 chr11:20623211 5'GT 20623211 Upstream 56bp
chr19 7505332 7505332 1 + C A rs28489511 7505328 + 7505308 7505348 41 TCTCTCAGAAAGGGGGTCCCCAGCCAACACCGAGCCCGGCT TCTCTCAGAAAGGGGGTCCCCAGCAAACACCGAGCCCGGCT < 41bp 0.499757333276949 0.850446735651099 0.20941278 0.20038447 prediction 0.700893471302198 Functional Gain - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7505328 chr19:7505332 nonsynonymous SNV 0.974 0 25 hm5C_associated_SNPs_99361 0 0 1 0 1 ARHGEF18 chr19:7505368 5'GT 7505368 Upstream 37bp
chr11 64137197 64137197 1 + C A rs373556651 64137193 + 64137173 64137213 41 CATCCTGTACGCCGACGACACGCCCGGGGCCCCGGTGAAAA CATCCTGTACGCCGACGACACGCCAGGGGCCCCGGTGAAAA < 41bp 0.482791850678729 0.850370575104206 0.006179899 0.045113146 prediction 0.700741150208412 Functional Gain - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137193 chr11:64137197 synonymous SNV . 0 25 hm5C_associated_SNPs_99363 0 0 0 0 1 RPS6KA4 chr11:64137171 3'AG 64137171 Downstream 27bp
chrX 65480070 65480070 1 + C A LUAD 65480066 + 65480046 65480086 41 TGTGACTGACCATGTCCATGCTGGCATGGAGACCCTCTTCA TGTGACTGACCATGTCCATGCTGGAATGGAGACCCTCTTCA < 41bp 0.489285327926462 0.850349423401717 0.05449736 0.074705064 prediction 0.700698846803435 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65480066 chrX:65480070 synonymous SNV . 0 25 hm5C_associated_SNPs_99365 0 0 0 0 1 HEPH chrX:65480104 5'GT 65480104 Upstream 35bp
chr17 26823483 26823483 1 + C A UCEC 26823479 + 26823459 26823499 41 CCACTCCAGGCCCAGGCCATCTGCCTCCACCCTCTCTACGT CCACTCCAGGCCCAGGCCATCTGCATCCACCCTCTCTACGT < 41bp 0.509962713755474 0.860251532609459 0.06937224 0.34571695 prediction 0.70057763770797 Functional Gain - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26823479 chr17:26823483 nonsynonymous SNV 0.970 0 25 hm5C_associated_SNPs_99367 0 0 0 0 1 SLC13A2 chr17:26823468 3'AG 26823468 Downstream 16bp
chr10 22680766 22680766 1 + C A LUAD 22680762 + 22680742 22680782 41 GGAAGACACACTCCTGAACACGCACGGGCTGTTGCAGTCAC GGAAGACACACTCCTGAACACGCAAGGGCTGTTGCAGTCAC < 41bp 0.468844377334323 0.85018691560247 0.09156412 0.19077635 prediction 0.70037383120494 Functional Gain - SPAG6 ENSG00000077327 CDS Human protein_coding chr10:22680762 chr10:22680766 synonymous SNV . 0 25 hm5C_associated_SNPs_99369 0 0 0 0 1 SPAG6 chr10:22680849 5'GT 22680849 Upstream 84bp
chr1 154516505 154516505 1 + T G OV 154516502 + 154516482 154516522 41 CTGAGCTGGCTGGCACTCATCCATAGCGTCCGTGGGGAGGC CTGAGCTGGCTGGCACTCATCCAGAGCGTCCGTGGGGAGGC < 41bp 0.499326057630697 0.85005880157102 0.14066479 0.28351036 prediction 0.70011760314204 Functional Gain - TDRD10 ENSG00000163239 CDS Human protein_coding chr1:154516502 chr1:154516505 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_99371 0 0 0 0 2 TDRD10 chr1:154516439 3'AG 154516439 Downstream 67bp
chr1 154516505 154516505 1 + T G OV 154516502 + 154516482 154516522 41 CTGAGCTGGCTGGCACTCATCCATAGCGTCCGTGGGGAGGC CTGAGCTGGCTGGCACTCATCCAGAGCGTCCGTGGGGAGGC < 41bp 0.499326057630697 0.85005880157102 0.14066479 0.28351036 prediction 0.70011760314204 Functional Gain - TDRD10 ENSG00000163239 CDS Human protein_coding chr1:154516502 chr1:154516505 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_99371 0 0 0 0 2 TDRD10 chr1:154516586 5'GT 154516586 Upstream 82bp
chr16 223546 223546 1 + C A HNSC 223542 + 223522 223562 41 TTCACCCCTGCGGTGCACGCCTCCCTGGACAAGTTCCTGGC TTCACCCCTGCGGTGCACGCCTCCATGGACAAGTTCCTGGC < 41bp 0.522426423351312 0.872413906973197 0.33823946 0.9771749 prediction 0.699974967243769 Functional Gain - HBA2 ENSG00000188536 CDS Human protein_coding chr16:223542 chr16:223546 nonsynonymous SNV 0.655 2 25 hm5C_associated_SNPs_99372 0 0 1 0 1 HBA2 chr16:223471 3'AG 223471 Downstream 76bp
chr10 104590666 104590666 1 - G T SARC 104590670 - 104590650 104590690 41 TTTGCCCTTCGGAGCAGGACCTCGCTCCTGTATAGGTGAGA TTTGCCCTTCGGAGCAGGACCTCGATCCTGTATAGGTGAGA < 41bp 0.487295546140466 0.849955397489643 0.10804835 0.39519233 prediction 0.699910794979286 Functional Gain - CYP17A1 ENSG00000148795 CDS Human protein_coding chr10:104590670 chr10:104590666 synonymous SNV . 0 25 hm5C_associated_SNPs_99373 0 0 0 0 1 CYP17A1 chr10:104590742 3'AG 104590742 Downstream 77bp
chr19 6750381 6750381 1 + C A rs28705365 6750377 + 6750357 6750397 41 AGCCGGCACGCCCGGCCTCCCGACCCCCCCGCTAGCGCCCC AGCCGGCACGCCCGGCCTCCCGACACCCCCGCTAGCGCCCC < 41bp 0.519210510760717 0.868986384284936 0.109831125 0.08341485 prediction 0.699551747048439 Functional Gain - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6750377 chr19:6750381 nonsynonymous SNV 0.796 2 25 hm5C_associated_SNPs_99380 0 0 1 0 2 TRIP10 chr19:6750303 3'AG 6750303 Downstream 79bp
chr19 6750381 6750381 1 + C A rs28705365 6750377 + 6750357 6750397 41 AGCCGGCACGCCCGGCCTCCCGACCCCCCCGCTAGCGCCCC AGCCGGCACGCCCGGCCTCCCGACACCCCCGCTAGCGCCCC < 41bp 0.519210510760717 0.868986384284936 0.109831125 0.08341485 prediction 0.699551747048439 Functional Gain - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6750377 chr19:6750381 nonsynonymous SNV 0.796 2 25 hm5C_associated_SNPs_99380 0 0 1 0 2 TRIP10 chr19:6750442 5'GT 6750442 Upstream 62bp
chr3 46940936 46940936 1 + C A COAD 46940932 + 46940912 46940952 41 GAAGTACCTGTGGGGCTTCACAGTCTTCGGCTGGGGTACGC GAAGTACCTGTGGGGCTTCACAGTATTCGGCTGGGGTACGC < 41bp 0.502970234492307 0.85266080875553 0.6605772 0.6184385 prediction 0.699381148526447 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46940932 chr3:46940936 synonymous SNV . 0 25 hm5C_associated_SNPs_99381 0 0 0 0 1 PTH1R chr3:46940946 5'GT 46940946 Upstream 11bp
chr17 26727744 26727744 1 - G T UCEC 26727748 - 26727728 26727768 41 CTGTGGCCTGTGTGAATAGCCTGGCCATGCTGACGGCCTCC CTGTGGCCTGTGTGAATAGCCTGGACATGCTGACGGCCTCC < 41bp 0.484345458875947 0.849654390799002 0.39008975 0.40564364 prediction 0.699308781598004 Functional Gain - SLC46A1 ENSG00000076351 CDS Human protein_coding chr17:26727748 chr17:26727744 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_99382 0 0 0 0 1 SLC46A1 chr17:26727783 3'AG 26727783 Downstream 40bp
chr17 74075584 74075584 1 + C A LIHC 74075580 + 74075560 74075600 41 TCAGGAAAGCATCCAGATCCCGAACAATGGGAGTGCGCCCC TCAGGAAAGCATCCAGATCCCGAAAAATGGGAGTGCGCCCC < 41bp 0.507400049069488 0.857054362364282 0.03005135 0.114001304 prediction 0.699308626589588 Functional Gain - ZACN ENSG00000186919 CDS Human protein_coding chr17:74075580 chr17:74075584 nonsynonymous SNV 0.015 0 25 hm5C_associated_SNPs_99383 0 0 0 0 2 ZACN chr17:74075520 3'AG 74075520 Downstream 65bp
chr17 74075584 74075584 1 + C A LIHC 74075580 + 74075560 74075600 41 TCAGGAAAGCATCCAGATCCCGAACAATGGGAGTGCGCCCC TCAGGAAAGCATCCAGATCCCGAAAAATGGGAGTGCGCCCC < 41bp 0.507400049069488 0.857054362364282 0.03005135 0.114001304 prediction 0.699308626589588 Functional Gain - ZACN ENSG00000186919 CDS Human protein_coding chr17:74075580 chr17:74075584 nonsynonymous SNV 0.015 0 25 hm5C_associated_SNPs_99383 0 0 0 0 2 ZACN chr17:74075644 5'GT 74075644 Upstream 61bp
chr19 45570793 45570793 1 + C A rs75895703 45570789 + 45570769 45570809 41 CAGCCAGAGCCCCTCGCCATCACCCGCAAGAGAGAAGCTGA CAGCCAGAGCCCCTCGCCATCACCAGCAAGAGAGAAGCTGA < 41bp 0.478252314013558 0.849527767920596 0.047388107 0.15165451 prediction 0.699055535841193 Functional Gain - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45570789 chr19:45570793 synonymous SNV . 0 25 hm5C_associated_SNPs_99384 0 0 1 0 1 CLASRP chr19:45570852 5'GT 45570852 Upstream 60bp
chr7 148481139 148481139 1 + C A CESC 148481135 + 148481115 148481155 41 CCAGTAAATCCCCTGAGTTGCTGGCTCGATACTGTGACTCC CCAGTAAATCCCCTGAGTTGCTGGATCGATACTGTGACTCC < 41bp 0.522335820866555 0.871858236819312 0.32995212 0.6408501 prediction 0.699044831905514 Functional Gain - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148481135 chr7:148481139 nonsynonymous SNV 0.996 5 25 hm5C_associated_SNPs_99385 0 0 1 0 2 CUL1 chr7:148481063 3'AG 148481063 Downstream 77bp
chr7 148481139 148481139 1 + C A CESC 148481135 + 148481115 148481155 41 CCAGTAAATCCCCTGAGTTGCTGGCTCGATACTGTGACTCC CCAGTAAATCCCCTGAGTTGCTGGATCGATACTGTGACTCC < 41bp 0.522335820866555 0.871858236819312 0.32995212 0.6408501 prediction 0.699044831905514 Functional Gain - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148481135 chr7:148481139 nonsynonymous SNV 0.996 5 25 hm5C_associated_SNPs_99385 0 0 1 0 2 CUL1 chr7:148481169 5'GT 148481169 Upstream 31bp
chr5 134229242 134229242 1 + C A UCEC 134229238 + 134229218 134229258 41 TGTACTCTAGTCCTGTTTTACACCCCGTGGTGCCGCTTTTC TGTACTCTAGTCCTGTTTTACACCACGTGGTGCCGCTTTTC < 41bp 0.474092874012985 0.849498660453379 0.07351199 0.08199057 prediction 0.698997320906758 Functional Gain - TXNDC15 ENSG00000113621 CDS Human protein_coding chr5:134229238 chr5:134229242 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_99386 0 0 1 0 1 TXNDC15 chr5:134229182 3'AG 134229182 Downstream 61bp
chr6 50696618 50696618 1 + C A LUAD 50696614 + 50696594 50696634 41 AGACTTATTTTGCTCTGTCCCTGGCCGTTTGTCCCTTCTTA AGACTTATTTTGCTCTGTCCCTGGACGTTTGTCCCTTCTTA < 41bp 0.50580398100782 0.854994956358649 0.08354026 0.4575664 prediction 0.69838195070166 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50696614 chr6:50696618 synonymous SNV . 0 25 hm5C_associated_SNPs_99390 0 0 0 0 1 TFAP2D chr6:50696569 3'AG 50696569 Downstream 50bp
chr1 6638783 6638783 1 + C A OV 6638779 + 6638759 6638799 41 GGGAAGCCAGACCTGCTTCCCGCGCACTGTGGTGTTTTTGG GGGAAGCCAGACCTGCTTCCCGCGAACTGTGGTGTTTTTGG < 41bp 0.491114197579831 0.849136433622449 0.24116156 0.8285968 prediction 0.698272867244898 Functional Gain - TAS1R1 ENSG00000173662 CDS Human protein_coding chr1:6638779 chr1:6638783 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_99391 0 0 0 0 1 TAS1R1 chr1:6638713 3'AG 6638713 Downstream 71bp
chr5 156816374 156816374 1 + C A UCEC 156816370 + 156816350 156816390 41 GATGAGTGTGTGGAGTTCCACCGGCTGTGGAGCGCCATGCA GATGAGTGTGTGGAGTTCCACCGGATGTGGAGCGCCATGCA < 41bp 0.502326834177658 0.851414142839484 0.1645413 0.27063358 prediction 0.69817461732365 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816370 chr5:156816374 nonsynonymous SNV 0.990 4 25 hm5C_associated_SNPs_99392 0 0 0 0 1 CYFIP2 chr5:156816435 5'GT 156816435 Upstream 62bp
chr8 2046745 2046745 1 + C A LUAD 2046741 + 2046721 2046761 41 TCAAAATCGCCGCCGTCAACCTGGCCGGCATCGGGGAGCCC TCAAAATCGCCGCCGTCAACCTGGACGGCATCGGGGAGCCC < 41bp 0.475250909008739 0.848961315044712 0.4470197 0.3579775 prediction 0.697922630089424 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2046741 chr8:2046745 nonsynonymous SNV 0.360 4 25 hm5C_associated_SNPs_99394 0 0 0 0 2 MYOM2 chr8:2046687 3'AG 2046687 Downstream 59bp
chr8 2046745 2046745 1 + C A LUAD 2046741 + 2046721 2046761 41 TCAAAATCGCCGCCGTCAACCTGGCCGGCATCGGGGAGCCC TCAAAATCGCCGCCGTCAACCTGGACGGCATCGGGGAGCCC < 41bp 0.475250909008739 0.848961315044712 0.4470197 0.3579775 prediction 0.697922630089424 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2046741 chr8:2046745 nonsynonymous SNV 0.360 4 25 hm5C_associated_SNPs_99394 0 0 0 0 2 MYOM2 chr8:2046813 5'GT 2046813 Upstream 69bp
chrX 149671598 149671598 1 + C A LUAD 149671594 + 149671574 149671614 41 GAAGCCAGGCACCCCCAGGTCAGCCTCGGGCGACAGCCCCC GAAGCCAGGCACCCCCAGGTCAGCATCGGGCGACAGCCCCC < 41bp 0.476597703648799 0.84896068696047 0.12944478 0.18730423 prediction 0.697921373920941 Functional Gain - MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149671594 chrX:149671598 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99395 0 0 0 0 1 MAMLD1 chrX:149671544 3'AG 149671544 Downstream 55bp
chr1 16375058 16375058 1 + C A UCEC 16375054 + 16375034 16375074 41 GGCGGCAGTGGGCGTGGCCACAGTCTTTGCAGCTCCCTTCA GGCGGCAGTGGGCGTGGCCACAGTATTTGCAGCTCCCTTCA < 41bp 0.511441648193124 0.860372550790043 0.3829675 0.3932442 prediction 0.69786180519384 Functional Gain - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16375054 chr1:16375058 synonymous SNV . 0 25 hm5C_associated_SNPs_99396 0 0 0 0 2 CLCNKB chr1:16374999 3'AG 16374999 Downstream 60bp
chr1 16375058 16375058 1 + C A UCEC 16375054 + 16375034 16375074 41 GGCGGCAGTGGGCGTGGCCACAGTCTTTGCAGCTCCCTTCA GGCGGCAGTGGGCGTGGCCACAGTATTTGCAGCTCCCTTCA < 41bp 0.511441648193124 0.860372550790043 0.3829675 0.3932442 prediction 0.69786180519384 Functional Gain - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16375054 chr1:16375058 synonymous SNV . 0 25 hm5C_associated_SNPs_99396 0 0 0 0 2 CLCNKB chr1:16375077 5'GT 16375077 Upstream 20bp
chr12 3649794 3649794 1 + C A rs202113481 3649790 + 3649770 3649810 41 AGGTGAACAGCCCCCCCTCCCAGCCCCCCCAGCCCGTCGTC AGGTGAACAGCCCCCCCTCCCAGCACCCCCAGCCCGTCGTC < 41bp 0.51714151532807 0.866058789337726 0.39405984 0.56125605 prediction 0.697834548019312 Functional Gain - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3649790 chr12:3649794 nonsynonymous SNV 0.887 2 25 hm5C_associated_SNPs_99397 0 0 0 0 1 PRMT8 chr12:3649772 3'AG 3649772 Downstream 23bp
chr8 22865620 22865620 1 - G T KIRC 22865624 - 22865604 22865644 41 CTTTGTGTCCTCAGCCTTACCTCCCGGGTGGAGCTCTCCAC CTTTGTGTCCTCAGCCTTACCTCCAGGGTGGAGCTCTCCAC < 41bp 0.491716787968308 0.84888591281648 0.08451706 0.9328195 prediction 0.69777182563296 Functional Gain - RHOBTB2 ENSG00000008853 CDS Human antisense chr8:22865624 chr8:22865620 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_99398 0 0 1 0 1 RHOBTB2 chr8:22865630 3'AG 22865630 Downstream 11bp
chr1 47603326 47603326 1 + C A rs148805480 47603322 + 47603302 47603342 41 CAGCAGTTCCCGTGCCCTCCCTCCCACTGGCTCTTCGGGCA CAGCAGTTCCCGTGCCCTCCCTCCAACTGGCTCTTCGGGCA < 41bp 0.475572556650005 0.848812749849287 0.28034568 0.9450811 prediction 0.697625499698574 Functional Gain - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47603322 chr1:47603326 nonsynonymous SNV 0.181 3 25 hm5C_associated_SNPs_99401 0 0 0 0 1 CYP4A22 chr1:47603352 5'GT 47603352 Upstream 27bp
chr14 21961331 21961331 1 + C A STAD 21961327 + 21961307 21961347 41 CTGTGGAAAGTAGTCCTGAGCGGCCTATGAACAACAGCCCT CTGTGGAAAGTAGTCCTGAGCGGCATATGAACAACAGCCCT < 41bp 0.514085490355639 0.862829365567156 0.47067094 0.62947625 prediction 0.697487750423033 Functional Gain - TOX4 ENSG00000092203 CDS Human protein_coding chr14:21961327 chr14:21961331 nonsynonymous SNV 0.992 0 25 hm5C_associated_SNPs_99402 0 0 1 0 1 TOX4 chr14:21961416 5'GT 21961416 Upstream 86bp
chr20 45362402 45362402 1 + C A UCEC 45362398 + 45362378 45362418 41 CATTCTTTGTCTGACAGGTTCACCCTGAGCTTTGGCCACAG CATTCTTTGTCTGACAGGTTCACCATGAGCTTTGGCCACAG < 41bp 0.489497479033528 0.848526193963045 0.017740846 0.02176094 prediction 0.69705238792609 Functional Gain - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45362398 chr20:45362402 nonsynonymous SNV 0.373 1 25 hm5C_associated_SNPs_99405 0 0 1 0 1 SLC2A10 chr20:45362395 3'AG 45362395 Downstream 8bp
chr1 206666659 206666659 1 + C A LUAD 206666655 + 206666635 206666675 41 CGAGCAAAGGGGGCTCAGGCCTCGCCGCCTCCCATAGCTCC CGAGCAAAGGGGGCTCAGGCCTCGACGCCTCCCATAGCTCC < 41bp 0.519743965997615 0.868149325728325 0.7154546 0.8863635 prediction 0.696810719461419 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206666655 chr1:206666659 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_99410 0 0 0 0 2 IKBKE chr1:206666599 3'AG 206666599 Downstream 61bp
chr1 206666659 206666659 1 + C A LUAD 206666655 + 206666635 206666675 41 CGAGCAAAGGGGGCTCAGGCCTCGCCGCCTCCCATAGCTCC CGAGCAAAGGGGGCTCAGGCCTCGACGCCTCCCATAGCTCC < 41bp 0.519743965997615 0.868149325728325 0.7154546 0.8863635 prediction 0.696810719461419 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206666655 chr1:206666659 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_99410 0 0 0 0 2 IKBKE chr1:206666711 5'GT 206666711 Upstream 53bp
chr2 29226496 29226496 1 + C A rs541890653 29226492 + 29226472 29226512 41 CGTGTGCCTGGCTCCCTTCCCAGCCCGTTACCTCCAGGCCA CGTGTGCCTGGCTCCCTTCCCAGCACGTTACCTCCAGGCCA < 41bp 0.505477527458092 0.853861986038813 0.44900453 0.84397674 prediction 0.696768917161441 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29226492 chr2:29226496 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_99411 0 0 0 0 1 TOGARAM2 chr2:29226548 5'GT 29226548 Upstream 53bp
chr19 48525449 48525449 1 + C A UCEC 48525445 + 48525425 48525465 41 AGGAATTTCCGCGTTGGTCCCTGGCTTTCCTTGTCACTTTC AGGAATTTCCGCGTTGGTCCCTGGATTTCCTTGTCACTTTC < 41bp 0.498706126138607 0.848236567059929 0.06876016 0.4291797 prediction 0.696473134119857 Functional Gain - ELSPBP1 ENSG00000169393 CDS Human protein_coding chr19:48525445 chr19:48525449 synonymous SNV . 0 25 hm5C_associated_SNPs_99413 0 0 0 0 1 ELSPBP1 chr19:48525427 3'AG 48525427 Downstream 23bp
chrX 130219620 130219620 1 + C A KICH 130219616 + 130219596 130219636 41 GTTGCTGGTCTACCTGATGCCACCCTGCCACAGTGATACCC GTTGCTGGTCTACCTGATGCCACCATGCCACAGTGATACCC < 41bp 0.452107019728612 0.848173136574755 0.02103439 0.122638196 prediction 0.696346273149509 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130219616 chrX:130219620 synonymous SNV . 0 25 hm5C_associated_SNPs_99414 0 0 0 0 2 ARHGAP36 chrX:130219562 3'AG 130219562 Downstream 59bp
chrX 130219620 130219620 1 + C A KICH 130219616 + 130219596 130219636 41 GTTGCTGGTCTACCTGATGCCACCCTGCCACAGTGATACCC GTTGCTGGTCTACCTGATGCCACCATGCCACAGTGATACCC < 41bp 0.452107019728612 0.848173136574755 0.02103439 0.122638196 prediction 0.696346273149509 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130219616 chrX:130219620 synonymous SNV . 0 25 hm5C_associated_SNPs_99414 0 0 0 0 2 ARHGAP36 chrX:130219710 5'GT 130219710 Upstream 91bp
chr16 55735808 55735808 1 + C A LUAD 55735804 + 55735784 55735824 41 TATGGCATCACGCCAGAGAACGAGCACCACCTGGTGGCTCA TATGGCATCACGCCAGAGAACGAGAACCACCTGGTGGCTCA < 41bp 0.510731334940646 0.858808784051871 0.7234144 0.80181205 prediction 0.696154898222451 Functional Gain - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55735804 chr16:55735808 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_99415 0 0 0 0 2 SLC6A2 chr16:55735775 3'AG 55735775 Downstream 34bp
chr16 55735808 55735808 1 + C A LUAD 55735804 + 55735784 55735824 41 TATGGCATCACGCCAGAGAACGAGCACCACCTGGTGGCTCA TATGGCATCACGCCAGAGAACGAGAACCACCTGGTGGCTCA < 41bp 0.510731334940646 0.858808784051871 0.7234144 0.80181205 prediction 0.696154898222451 Functional Gain - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55735804 chr16:55735808 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_99415 0 0 0 0 2 SLC6A2 chr16:55735846 5'GT 55735846 Upstream 39bp
chr19 57743153 57743153 1 + C A HNSC 57743149 + 57743129 57743169 41 AGCCCAGCAGCCCAGCAGCCCAGCCATGTGAGTCCCTTGGG AGCCCAGCAGCCCAGCAGCCCAGCAATGTGAGTCCCTTGGG < 41bp 0.514301315542773 0.862306597382289 0.24603271 0.38208193 prediction 0.696010563679031 Functional Gain - AURKC ENSG00000105146 CDS Human protein_coding chr19:57743149 chr19:57743153 synonymous SNV . 0 25 hm5C_associated_SNPs_99416 0 0 0 0 3 AURKC chr19:57743110 3'AG 57743110 Downstream 44bp
chr19 57743153 57743153 1 + C A HNSC 57743149 + 57743129 57743169 41 AGCCCAGCAGCCCAGCAGCCCAGCCATGTGAGTCCCTTGGG AGCCCAGCAGCCCAGCAGCCCAGCAATGTGAGTCCCTTGGG < 41bp 0.514301315542773 0.862306597382289 0.24603271 0.38208193 prediction 0.696010563679031 Functional Gain - AURKC ENSG00000105146 CDS Human protein_coding chr19:57743149 chr19:57743153 synonymous SNV . 0 25 hm5C_associated_SNPs_99416 0 0 0 0 3 AURKC chr19:57743119 3'AG 57743119 Downstream 35bp
chr19 57743153 57743153 1 + C A HNSC 57743149 + 57743129 57743169 41 AGCCCAGCAGCCCAGCAGCCCAGCCATGTGAGTCCCTTGGG AGCCCAGCAGCCCAGCAGCCCAGCAATGTGAGTCCCTTGGG < 41bp 0.514301315542773 0.862306597382289 0.24603271 0.38208193 prediction 0.696010563679031 Functional Gain - AURKC ENSG00000105146 CDS Human protein_coding chr19:57743149 chr19:57743153 synonymous SNV . 0 25 hm5C_associated_SNPs_99416 0 0 0 0 3 AURKC chr19:57743155 5'GT 57743155 Upstream 3bp
chr1 156702836 156702836 1 + C A LUAD 156702832 + 156702812 156702852 41 CCAGGTTGTAGACGTGGGCTCAGGCCAGGTGAGCCAGAGTC CCAGGTTGTAGACGTGGGCTCAGGACAGGTGAGCCAGAGTC < 41bp 0.494445235737171 0.847985416017756 0.8052292 0.87866026 prediction 0.695970832035513 Functional Gain - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156702832 chr1:156702836 synonymous SNV . 0 25 hm5C_associated_SNPs_99417 0 0 1 0 2 RRNAD1 chr1:156702777 3'AG 156702777 Downstream 60bp
chr1 156702836 156702836 1 + C A LUAD 156702832 + 156702812 156702852 41 CCAGGTTGTAGACGTGGGCTCAGGCCAGGTGAGCCAGAGTC CCAGGTTGTAGACGTGGGCTCAGGACAGGTGAGCCAGAGTC < 41bp 0.494445235737171 0.847985416017756 0.8052292 0.87866026 prediction 0.695970832035513 Functional Gain - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156702832 chr1:156702836 synonymous SNV . 0 25 hm5C_associated_SNPs_99417 0 0 1 0 2 RRNAD1 chr1:156702839 5'GT 156702839 Upstream 4bp
chr1 111854862 111854862 1 + C A BLCA 111854858 + 111854838 111854878 41 TTCACCAACTGGGCCCAGTACCGGCCAGGCCTGGGGCGCTT TTCACCAACTGGGCCCAGTACCGGACAGGCCTGGGGCGCTT < 41bp 0.502276969025413 0.85023351002014 0.41448638 0.5530006 prediction 0.695913081989455 Functional Gain - CHIA ENSG00000134216 CDS Human protein_coding chr1:111854858 chr1:111854862 nonsynonymous SNV 0.005 1 25 hm5C_associated_SNPs_99419 0 0 0 0 1 CHIA chr1:111854812 3'AG 111854812 Downstream 51bp
chr1 203467937 203467937 1 + C A SKCM 203467933 + 203467913 203467953 41 TATGCACGCTTCAACCGCATCAGCCGTATCAGGGCCGAAGA TATGCACGCTTCAACCGCATCAGCAGTATCAGGGCCGAAGA < 41bp 0.526446901481972 0.874378991548072 0.12619966 0.061684817 prediction 0.695864180132199 Functional Gain - OPTC ENSG00000188770 CDS Human protein_coding chr1:203467933 chr1:203467937 nonsynonymous SNV 0.135 0 25 hm5C_associated_SNPs_99421 0 0 0 0 1 OPTC chr1:203467967 5'GT 203467967 Upstream 31bp
chr17 61615473 61615473 1 + C A rs550764064 61615469 + 61615449 61615489 41 GGGAACGTGTCCGCGATCATCCAGCGCCTGTACTCGGGCAC GGGAACGTGTCCGCGATCATCCAGAGCCTGTACTCGGGCAC < 41bp 0.504825061372689 0.85267230300836 0.8310477 0.9024087 prediction 0.69569448327134 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61615469 chr17:61615473 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99423 0 0 0 0 1 KCNH6 chr17:61615426 3'AG 61615426 Downstream 48bp
chr9 127618524 127618524 1 + C A rs544368328 127618520 + 127618500 127618540 41 AGCTCAGGGCTCTCTCTAGTCCGGCCAGATGCTGCGCCTCT AGCTCAGGGCTCTCTCTAGTCCGGACAGATGCTGCGCCTCT < 41bp 0.502212406331939 0.850042498350658 0.8688334 0.8637834 prediction 0.695660184037438 Functional Gain - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127618520 chr9:127618524 synonymous SNV . 0 25 hm5C_associated_SNPs_99424 0 0 0 0 2 WDR38 chr9:127618519 3'AG 127618519 Downstream 6bp
chr9 127618524 127618524 1 + C A rs544368328 127618520 + 127618500 127618540 41 AGCTCAGGGCTCTCTCTAGTCCGGCCAGATGCTGCGCCTCT AGCTCAGGGCTCTCTCTAGTCCGGACAGATGCTGCGCCTCT < 41bp 0.502212406331939 0.850042498350658 0.8688334 0.8637834 prediction 0.695660184037438 Functional Gain - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127618520 chr9:127618524 synonymous SNV . 0 25 hm5C_associated_SNPs_99424 0 0 0 0 2 WDR38 chr9:127618599 5'GT 127618599 Upstream 76bp
chr3 125694456 125694456 1 + C A LUAD 125694452 + 125694432 125694472 41 AGACGCCTCCGGTGAGAGAGCGGTCTGAGCGAGTCGCTTTG AGACGCCTCCGGTGAGAGAGCGGTATGAGCGAGTCGCTTTG < 41bp 0.518193850055 0.865958134908322 0.56047165 0.53059036 prediction 0.695528569706644 Functional Gain - ROPN1B ENSG00000114547 CDS Human protein_coding chr3:125694452 chr3:125694456 nonsynonymous SNV 0.062 1 25 hm5C_associated_SNPs_99425 0 0 0 0 1 ROPN1B chr3:125694523 5'GT 125694523 Upstream 68bp
chr7 48083164 48083164 1 + C A UCEC 48083160 + 48083140 48083180 41 GACTGGTATATCCACCACAGCAAGCCACCGACAGCCAGCCA GACTGGTATATCCACCACAGCAAGACACCGACAGCCAGCCA < 41bp 0.482600282629341 0.847695639887039 0.15157714 0.23052338 prediction 0.695391279774078 Functional Gain - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48083160 chr7:48083164 nonsynonymous SNV 0.922 2 25 hm5C_associated_SNPs_99426 0 0 0 0 1 C7orf57 chr7:48083078 3'AG 48083078 Downstream 87bp
chr19 39760211 39760211 1 + C A LUSC 39760207 + 39760187 39760227 41 GGCCACCGCTGACACTGACCCAGCCCTGGTGGACGTCTTGG GGCCACCGCTGACACTGACCCAGCACTGGTGGACGTCTTGG < 41bp 0.519940480408671 0.86759014854539 0.12350947 0.12687084 prediction 0.695299336273439 Functional Gain - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39760207 chr19:39760211 synonymous SNV . 0 25 hm5C_associated_SNPs_99429 0 0 0 0 2 IFNL2 chr19:39760128 3'AG 39760128 Downstream 84bp
chr19 39760211 39760211 1 + C A LUSC 39760207 + 39760187 39760227 41 GGCCACCGCTGACACTGACCCAGCCCTGGTGGACGTCTTGG GGCCACCGCTGACACTGACCCAGCACTGGTGGACGTCTTGG < 41bp 0.519940480408671 0.86759014854539 0.12350947 0.12687084 prediction 0.695299336273439 Functional Gain - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39760207 chr19:39760211 synonymous SNV . 0 25 hm5C_associated_SNPs_99429 0 0 0 0 2 IFNL2 chr19:39760277 5'GT 39760277 Upstream 67bp
chr12 122255151 122255151 1 + C A rs191488950 122255147 + 122255127 122255167 41 GCCACCAGACACCACCTCATCTGGCGACCAGAAGCGGCTGC GCCACCAGACACCACCTCATCTGGAGACCAGAAGCGGCTGC < 41bp 0.51676357534077 0.864412668506444 0.23490185 0.21765605 prediction 0.695298186331347 Functional Gain - SETD1B ENSG00000139718 CDS Human protein_coding chr12:122255147 chr12:122255151 synonymous SNV . 0 25 hm5C_associated_SNPs_99430 0 0 1 0 1 SETD1B chr12:122255200 5'GT 122255200 Upstream 50bp
chr6 33383399 33383399 1 + C A COAD 33383395 + 33383375 33383415 41 TCCGGATGTTTGCTTCCTTCCACCCTTCTGCCAGCACCGCA TCCGGATGTTTGCTTCCTTCCACCATTCTGCCAGCACCGCA < 41bp 0.527326249008986 0.87492066288259 0.037181765 0.056743264 prediction 0.695188827747208 Functional Gain - PHF1 ENSG00000112511 CDS Human protein_coding chr6:33383395 chr6:33383399 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_99431 0 0 1 0 2 PHF1 chr6:33383367 3'AG 33383367 Downstream 33bp
chr6 33383399 33383399 1 + C A COAD 33383395 + 33383375 33383415 41 TCCGGATGTTTGCTTCCTTCCACCCTTCTGCCAGCACCGCA TCCGGATGTTTGCTTCCTTCCACCATTCTGCCAGCACCGCA < 41bp 0.527326249008986 0.87492066288259 0.037181765 0.056743264 prediction 0.695188827747208 Functional Gain - PHF1 ENSG00000112511 CDS Human protein_coding chr6:33383395 chr6:33383399 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_99431 0 0 1 0 2 PHF1 chr6:33383447 5'GT 33383447 Upstream 49bp
chr22 24124604 24124604 1 + C A TGCT 24124600 + 24124580 24124620 41 ACCCGGCGTGTAGACAGTCCCGTGCCCCGCAGGGCCACTGA ACCCGGCGTGTAGACAGTCCCGTGACCCGCAGGGCCACTGA < 41bp 0.509696368574194 0.857280723059024 0.08493197 0.33131272 prediction 0.695168708969661 Functional Gain - MMP11 ENSG00000099953;ENSG00000267954 CDS Human other chr22:24124600 chr22:24124604 nonsynonymous SNV 0.958 4 25 hm5C_associated_SNPs_99432 0 0 1 0 2 MMP11 chr22:24124555 3'AG 24124555 Downstream 50bp
chr22 24124604 24124604 1 + C A TGCT 24124600 + 24124580 24124620 41 ACCCGGCGTGTAGACAGTCCCGTGCCCCGCAGGGCCACTGA ACCCGGCGTGTAGACAGTCCCGTGACCCGCAGGGCCACTGA < 41bp 0.509696368574194 0.857280723059024 0.08493197 0.33131272 prediction 0.695168708969661 Functional Gain - MMP11 ENSG00000099953;ENSG00000267954 CDS Human other chr22:24124600 chr22:24124604 nonsynonymous SNV 0.958 4 25 hm5C_associated_SNPs_99432 0 0 1 0 2 MMP11 chr22:24124670 5'GT 24124670 Upstream 67bp
chr12 250326 250326 1 + C A rs144089662 250322 + 250302 250342 41 GGGCATCCAGTTCCTGATCTCACGCGGCTTCATCCCGGACA GGGCATCCAGTTCCTGATCTCACGAGGCTTCATCCCGGACA < 41bp 0.516181221186119 0.863666313968033 0.06984797 0.2134248 prediction 0.694970185563827 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:250322 chr12:250326 synonymous SNV . 0 25 hm5C_associated_SNPs_99434 0 0 0 0 1 IQSEC3 chr12:250290 3'AG 250290 Downstream 37bp
chr1 154950494 154950494 1 + C A STAD 154950490 + 154950470 154950510 41 ATGCTGCCCAAGGACATAGCCAAGCTGGTCCCTAAAACCCA ATGCTGCCCAAGGACATAGCCAAGATGGTCCCTAAAACCCA < 41bp 0.506267690763664 0.853725289322565 0.3204791 0.15182793 prediction 0.6949151971178 Functional Gain - CKS1B ENSG00000173207 CDS Human protein_coding chr1:154950490 chr1:154950494 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_99435 0 0 0 0 2 CKS1B chr1:154950463 3'AG 154950463 Downstream 32bp
chr1 154950494 154950494 1 + C A STAD 154950490 + 154950470 154950510 41 ATGCTGCCCAAGGACATAGCCAAGCTGGTCCCTAAAACCCA ATGCTGCCCAAGGACATAGCCAAGATGGTCCCTAAAACCCA < 41bp 0.506267690763664 0.853725289322565 0.3204791 0.15182793 prediction 0.6949151971178 Functional Gain - CKS1B ENSG00000173207 CDS Human protein_coding chr1:154950490 chr1:154950494 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_99435 0 0 0 0 2 CKS1B chr1:154950590 5'GT 154950590 Upstream 97bp
chr16 67203550 67203550 1 + C A rs35750776 67203546 + 67203526 67203566 41 TCTCCTAGGGAAGGACCCCACGCTCGGGGCCCCACTCCTGC TCTCCTAGGGAAGGACCCCACGCTAGGGGCCCCACTCCTGC < 41bp 0.490388890833964 0.847380545423717 0.016349167 0.07606688 prediction 0.694761090847434 Functional Gain - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67203546 chr16:67203550 synonymous SNV . 0 25 hm5C_associated_SNPs_99436 0 0 1 0 1 HSF4 chr16:67203534 3'AG 67203534 Downstream 17bp
chr16 4845805 4845805 1 + T G rs73513279 4845802 + 4845782 4845822 41 TGGGGAGACTGAAGAGCCACCAGTTTTTCCAGTCCACATGG TGGGGAGACTGAAGAGCCACCAGGTTTTCCAGTCCACATGG < 41bp 0.493564498109702 0.847346272834413 0.15427715 0.8909303 prediction 0.694692545668826 Functional Gain - SMIM22 ENSG00000267795 CDS Human antisense chr16:4845802 chr16:4845805 nonsynonymous SNV 0.617 0 24 hm5C_associated_SNPs_99438 0 0 0 1 2 SMIM22 chr16:4845716 3'AG 4845716 Downstream 90bp
chr16 4845805 4845805 1 + T G rs73513279 4845802 + 4845782 4845822 41 TGGGGAGACTGAAGAGCCACCAGTTTTTCCAGTCCACATGG TGGGGAGACTGAAGAGCCACCAGGTTTTCCAGTCCACATGG < 41bp 0.493564498109702 0.847346272834413 0.15427715 0.8909303 prediction 0.694692545668826 Functional Gain - SMIM22 ENSG00000267795 CDS Human protein_coding chr16:4845802 chr16:4845805 nonsynonymous SNV 0.617 0 24 hm5C_associated_SNPs_99438 0 0 0 1 2 SMIM22 chr16:4845859 5'GT 4845859 Upstream 55bp
chr7 100276231 100276231 1 + C A LGG 100276227 + 100276207 100276247 41 ATCTGGGATGCCATGAAGGGCGACCGTGCAGGTGACAGCTG ATCTGGGATGCCATGAAGGGCGACAGTGCAGGTGACAGCTG < 41bp 0.490553692197195 0.847338364421279 0.30709785 0.30334055 prediction 0.694676728842559 Functional Gain - GNB2 ENSG00000172354 CDS Human protein_coding chr7:100276227 chr7:100276231 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99439 0 0 1 0 1 GNB2 chr7:100276237 5'GT 100276237 Upstream 7bp
chrX 69497348 69497348 1 + C A UCEC 69497344 + 69497324 69497364 41 GCCGCTTCCTTCTGTCAGCTCAGCCCCTACAACTCCAGGCC GCCGCTTCCTTCTGTCAGCTCAGCACCTACAACTCCAGGCC < 41bp 0.528803207006724 0.876082592723891 0.24473351 0.30128837 prediction 0.694558771434334 Functional Gain - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69497344 chrX:69497348 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99442 0 0 0 0 1 ARR3 chrX:69497379 5'GT 69497379 Upstream 32bp
chr1 148932835 148932835 1 + C A LUAD 148932831 + 148932811 148932851 41 CCCGCCAGGCCTCCATAGAGCTGCCCAGCATGGCTGCATCC CCCGCCAGGCCTCCATAGAGCTGCACAGCATGGCTGCATCC < 41bp 0.510599252204029 0.857839001534468 0.091608256 0.08935475 prediction 0.694479498660879 Functional Gain - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932831 chr1:148932835 . . 0 25 hm5C_associated_SNPs_99443 0 0 1 2 2 LOC645166 chr1:148932786 3'AG 148932786 Downstream 50bp
chr1 148932835 148932835 1 + C A LUAD 148932831 + 148932811 148932851 41 CCCGCCAGGCCTCCATAGAGCTGCCCAGCATGGCTGCATCC CCCGCCAGGCCTCCATAGAGCTGCACAGCATGGCTGCATCC < 41bp 0.510599252204029 0.857839001534468 0.091608256 0.08935475 prediction 0.694479498660879 Functional Gain - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932831 chr1:148932835 . . 0 25 hm5C_associated_SNPs_99443 0 0 1 2 2 LOC645166 chr1:148932920 5'GT 148932920 Upstream 86bp
chr4 74277725 74277725 1 + C A LUAD 74277721 + 74277701 74277741 41 TTTTCTTTTTAGGGCAGTAGCTCGCCTGAGCCAGAGATTTC TTTTCTTTTTAGGGCAGTAGCTCGACTGAGCCAGAGATTTC < 41bp 0.489038428077847 0.84711940809893 0.023806304 0.3085668 prediction 0.69423881619786 Functional Gain - ALB ENSG00000163631 CDS Human protein_coding chr4:74277721 chr4:74277725 synonymous SNV . 0 25 hm5C_associated_SNPs_99446 0 0 1 3 1 ALB chr4:74277713 3'AG 74277713 Downstream 13bp
chr2 68882063 68882063 1 + C A LIHC 68882059 + 68882039 68882079 41 ACCACGGATGAAGTGCCAAACAGCCACTGGCCTGATTGCCT ACCACGGATGAAGTGCCAAACAGCAACTGGCCTGATTGCCT < 41bp 0.514958723560658 0.862075098987561 0.10860503 0.17094159 prediction 0.694232750853808 Functional Gain - PROKR1 ENSG00000169618 CDS Human protein_coding chr2:68882059 chr2:68882063 synonymous SNV . 0 25 hm5C_associated_SNPs_99447 0 0 0 0 1 PROKR1 chr2:68882012 3'AG 68882012 Downstream 52bp
chr17 66518980 66518980 1 + C A HNSC 66518976 + 66518956 66518996 41 GGATGAGATTTCTCCTCCTCCACCCAACCCAGTGGTTAAAG GGATGAGATTTCTCCTCCTCCACCAAACCCAGTGGTTAAAG < 41bp 0.455264329572143 0.847075194057663 0.122143924 0.1555439 prediction 0.694150388115326 Functional Gain - PRKAR1A ENSG00000108946 CDS Human protein_coding chr17:66518976 chr17:66518980 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_99449 0 0 1 0 2 PRKAR1A chr17:66518897 3'AG 66518897 Downstream 84bp
chr17 66518980 66518980 1 + C A HNSC 66518976 + 66518956 66518996 41 GGATGAGATTTCTCCTCCTCCACCCAACCCAGTGGTTAAAG GGATGAGATTTCTCCTCCTCCACCAAACCCAGTGGTTAAAG < 41bp 0.455264329572143 0.847075194057663 0.122143924 0.1555439 prediction 0.694150388115326 Functional Gain - PRKAR1A ENSG00000108946 CDS Human protein_coding chr17:66518976 chr17:66518980 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_99449 0 0 1 0 2 PRKAR1A chr17:66519067 5'GT 66519067 Upstream 88bp
chr6 26458895 26458895 1 + C A ESCA 26458891 + 26458871 26458911 41 TCAGCTGCTGCCCTGCACTTCTCCCGGCCAGCCTCCCTCCT TCAGCTGCTGCCCTGCACTTCTCCAGGCCAGCCTCCCTCCT < 41bp 0.468128875034845 0.847053172100856 0.35736358 0.9378215 prediction 0.694106344201711 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26458891 chr6:26458895 synonymous SNV . 0 25 hm5C_associated_SNPs_99450 0 0 1 0 2 BTN2A1 chr6:26458835 3'AG 26458835 Downstream 61bp
chr6 26458895 26458895 1 + C A ESCA 26458891 + 26458871 26458911 41 TCAGCTGCTGCCCTGCACTTCTCCCGGCCAGCCTCCCTCCT TCAGCTGCTGCCCTGCACTTCTCCAGGCCAGCCTCCCTCCT < 41bp 0.468128875034845 0.847053172100856 0.35736358 0.9378215 prediction 0.694106344201711 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26458891 chr6:26458895 synonymous SNV . 0 25 hm5C_associated_SNPs_99450 0 0 1 0 2 BTN2A1 chr6:26458946 5'GT 26458946 Upstream 52bp
chr10 118354303 118354303 1 + C A ACC 118354299 + 118354279 118354319 41 TGGACTGGAAGAAGGGCTCCCAAGCCACCTACACACAGGCT TGGACTGGAAGAAGGGCTCCCAAGACACCTACACACAGGCT < 41bp 0.482457838806008 0.846898279337368 0.20660803 0.37796375 prediction 0.693796558674735 Functional Gain - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118354299 chr10:118354303 nonsynonymous SNV 0.965 2 25 hm5C_associated_SNPs_99453 0 0 0 0 2 PNLIPRP1 chr10:118354242 3'AG 118354242 Downstream 62bp
chr10 118354303 118354303 1 + C A ACC 118354299 + 118354279 118354319 41 TGGACTGGAAGAAGGGCTCCCAAGCCACCTACACACAGGCT TGGACTGGAAGAAGGGCTCCCAAGACACCTACACACAGGCT < 41bp 0.482457838806008 0.846898279337368 0.20660803 0.37796375 prediction 0.693796558674735 Functional Gain - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118354299 chr10:118354303 nonsynonymous SNV 0.965 2 25 hm5C_associated_SNPs_99453 0 0 0 0 2 PNLIPRP1 chr10:118354376 5'GT 118354376 Upstream 74bp
chr16 30779808 30779808 1 + C A HNSC 30779804 + 30779784 30779824 41 AAGGCCAAGGTGGAAGAAACCAAGCGGAAGGAATCAGAACT AAGGCCAAGGTGGAAGAAACCAAGAGGAAGGAATCAGAACT < 41bp 0.489701341048376 0.846865932947449 0.6658757 0.879099 prediction 0.693731865894899 Functional Gain - RNF40 ENSG00000103549 CDS Human protein_coding chr16:30779804 chr16:30779808 synonymous SNV . 0 25 hm5C_associated_SNPs_99456 0 0 1 0 1 RNF40 chr16:30779851 5'GT 30779851 Upstream 44bp
chr10 82369197 82369197 1 + C A rs112089423 82369193 + 82369173 82369213 41 TCTTCAGCAGGACCTGGGAGCGCCCGCTGCGCCCAGTCTCC TCTTCAGCAGGACCTGGGAGCGCCAGCTGCGCCCAGTCTCC < 41bp 0.478363566729245 0.846860494662194 0.047359407 0.27021667 prediction 0.693720989324388 Functional Gain - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82369193 chr10:82369197 nonsynonymous SNV 0.679 1 25 hm5C_associated_SNPs_99457 0 0 0 0 2 SH2D4B chr10:82369180 3'AG 82369180 Downstream 18bp
chr10 82369197 82369197 1 + C A rs112089423 82369193 + 82369173 82369213 41 TCTTCAGCAGGACCTGGGAGCGCCCGCTGCGCCCAGTCTCC TCTTCAGCAGGACCTGGGAGCGCCAGCTGCGCCCAGTCTCC < 41bp 0.478363566729245 0.846860494662194 0.047359407 0.27021667 prediction 0.693720989324388 Functional Gain - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82369193 chr10:82369197 nonsynonymous SNV 0.679 1 25 hm5C_associated_SNPs_99457 0 0 0 0 2 SH2D4B chr10:82369183 3'AG 82369183 Downstream 15bp
chr19 34291419 34291419 1 + C A COAD 34291415 + 34291395 34291435 41 GCTTCACACACACGGCAGCACCGGCACCGCGGTGAGCCTGC GCTTCACACACACGGCAGCACCGGAACCGCGGTGAGCCTGC < 41bp 0.50202921973734 0.848878539079487 0.17311966 0.24073789 prediction 0.693698638684296 Functional Gain - KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34291415 chr19:34291419 synonymous SNV . 0 25 hm5C_associated_SNPs_99459 0 0 0 0 2 KCTD15 chr19:34291333 3'AG 34291333 Downstream 87bp
chr19 34291419 34291419 1 + C A COAD 34291415 + 34291395 34291435 41 GCTTCACACACACGGCAGCACCGGCACCGCGGTGAGCCTGC GCTTCACACACACGGCAGCACCGGAACCGCGGTGAGCCTGC < 41bp 0.50202921973734 0.848878539079487 0.17311966 0.24073789 prediction 0.693698638684296 Functional Gain - KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34291415 chr19:34291419 synonymous SNV . 0 25 hm5C_associated_SNPs_99459 0 0 0 0 2 KCTD15 chr19:34291425 5'GT 34291425 Upstream 7bp
chr18 77798522 77798522 1 + C A OV 77798518 + 77798498 77798538 41 GTCTCAGGTTTCCCTGACTCCAGACTTCTCAGCCTGCCGAG GTCTCAGGTTTCCCTGACTCCAGAATTCTCAGCCTGCCGAG < 41bp 0.487397636526132 0.846678630450972 0.67304707 0.48348418 prediction 0.693357260901944 Functional Gain - RBFA ENSG00000101546 CDS Human protein_coding chr18:77798518 chr18:77798522 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99461 0 0 1 0 2 RBFA chr18:77798505 3'AG 77798505 Downstream 18bp
chr18 77798522 77798522 1 + C A OV 77798518 + 77798498 77798538 41 GTCTCAGGTTTCCCTGACTCCAGACTTCTCAGCCTGCCGAG GTCTCAGGTTTCCCTGACTCCAGAATTCTCAGCCTGCCGAG < 41bp 0.487397636526132 0.846678630450972 0.67304707 0.48348418 prediction 0.693357260901944 Functional Gain - RBFA ENSG00000101546 CDS Human protein_coding chr18:77798518 chr18:77798522 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99461 0 0 1 0 2 RBFA chr18:77798617 5'GT 77798617 Upstream 96bp
chr18 908276 908276 1 + C A LUSC 908272 + 908252 908292 41 TGCCTCCCCGTTAGAGATGTCGCCCACGGGATCCTTAACGA TGCCTCCCCGTTAGAGATGTCGCCAACGGGATCCTTAACGA < 41bp 0.531262322378072 0.877721774498954 0.018742293 0.38529354 prediction 0.692918904241764 Functional Gain - ADCYAP1 ENSG00000141433 CDS Human protein_coding chr18:908272 chr18:908276 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_99464 0 0 0 0 2 ADCYAP1 chr18:908266 3'AG 908266 Downstream 11bp
chr18 908276 908276 1 + C A LUSC 908272 + 908252 908292 41 TGCCTCCCCGTTAGAGATGTCGCCCACGGGATCCTTAACGA TGCCTCCCCGTTAGAGATGTCGCCAACGGGATCCTTAACGA < 41bp 0.531262322378072 0.877721774498954 0.018742293 0.38529354 prediction 0.692918904241764 Functional Gain - ADCYAP1 ENSG00000141433 CDS Human protein_coding chr18:908272 chr18:908276 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_99464 0 0 0 0 2 ADCYAP1 chr18:908364 5'GT 908364 Upstream 89bp
chr16 20442608 20442608 1 + C A THYM 20442604 + 20442584 20442624 41 GGGAATGTTGCCGTCCGTATCAGACCCACTCGGCCCTTCTG GGGAATGTTGCCGTCCGTATCAGAACCACTCGGCCCTTCTG < 41bp 0.48285350126605 0.846437907563624 0.90777314 0.9243665 prediction 0.692875815127249 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20442604 chr16:20442608 nonsynonymous SNV 0.804 2 25 hm5C_associated_SNPs_99465 0 0 0 0 2 ACSM5 chr16:20442542 3'AG 20442542 Downstream 67bp
chr16 20442608 20442608 1 + C A THYM 20442604 + 20442584 20442624 41 GGGAATGTTGCCGTCCGTATCAGACCCACTCGGCCCTTCTG GGGAATGTTGCCGTCCGTATCAGAACCACTCGGCCCTTCTG < 41bp 0.48285350126605 0.846437907563624 0.90777314 0.9243665 prediction 0.692875815127249 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20442604 chr16:20442608 nonsynonymous SNV 0.804 2 25 hm5C_associated_SNPs_99465 0 0 0 0 2 ACSM5 chr16:20442643 5'GT 20442643 Upstream 36bp
chr3 133166219 133166219 1 + C A LUSC 133166215 + 133166195 133166235 41 TGCTGCAGACAGAAACTATCCAGGCCGGAGCAGATGACTTT TGCTGCAGACAGAAACTATCCAGGACGGAGCAGATGACTTT < 41bp 0.515208053956188 0.861591865225413 0.5077757 0.36177295 prediction 0.692767622538448 Functional Gain - BFSP2 ENSG00000170819 CDS Human protein_coding chr3:133166215 chr3:133166219 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_99467 0 0 0 0 2 BFSP2 chr3:133166161 3'AG 133166161 Downstream 59bp
chr3 133166219 133166219 1 + C A LUSC 133166215 + 133166195 133166235 41 TGCTGCAGACAGAAACTATCCAGGCCGGAGCAGATGACTTT TGCTGCAGACAGAAACTATCCAGGACGGAGCAGATGACTTT < 41bp 0.515208053956188 0.861591865225413 0.5077757 0.36177295 prediction 0.692767622538448 Functional Gain - BFSP2 ENSG00000170819 CDS Human protein_coding chr3:133166215 chr3:133166219 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_99467 0 0 0 0 2 BFSP2 chr3:133166243 5'GT 133166243 Upstream 25bp
chr11 63141182 63141182 1 + C A LUAD 63141178 + 63141158 63141198 41 TGCCATTGTTGGCACCTGTGCAGCCTTGGCTCCCACCTTCC TGCCATTGTTGGCACCTGTGCAGCATTGGCTCCCACCTTCC < 41bp 0.484073827062458 0.846193870921998 0.30493146 0.15907735 prediction 0.692387741843997 Functional Gain - SLC22A9 ENSG00000149742 CDS Human protein_coding chr11:63141178 chr11:63141182 synonymous SNV . 0 25 hm5C_associated_SNPs_99474 0 0 0 0 2 SLC22A9 chr11:63141116 3'AG 63141116 Downstream 67bp
chr11 63141182 63141182 1 + C A LUAD 63141178 + 63141158 63141198 41 TGCCATTGTTGGCACCTGTGCAGCCTTGGCTCCCACCTTCC TGCCATTGTTGGCACCTGTGCAGCATTGGCTCCCACCTTCC < 41bp 0.484073827062458 0.846193870921998 0.30493146 0.15907735 prediction 0.692387741843997 Functional Gain - SLC22A9 ENSG00000149742 CDS Human protein_coding chr11:63141178 chr11:63141182 synonymous SNV . 0 25 hm5C_associated_SNPs_99474 0 0 0 0 2 SLC22A9 chr11:63141270 5'GT 63141270 Upstream 89bp
chr8 125580690 125580690 1 - G T SARC 125580694 - 125580674 125580714 41 TATTGGAAGAAACAGAAAAGCAGGCTGTCCGGAAGGCTTTG TATTGGAAGAAACAGAAAAGCAGGATGTCCGGAAGGCTTTG < 41bp 0.485676965126769 0.846142691007278 0.86371225 0.86062276 prediction 0.692285382014556 Functional Gain - MTSS1 ENSG00000170873 CDS Human protein_coding chr8:125580694 chr8:125580690 nonsynonymous SNV 0.859 4 25 hm5C_associated_SNPs_99475 0 0 1 0 2 MTSS1 chr8:125580620 5'GT 125580620 Upstream 71bp
chr8 125580690 125580690 1 - G T SARC 125580694 - 125580674 125580714 41 TATTGGAAGAAACAGAAAAGCAGGCTGTCCGGAAGGCTTTG TATTGGAAGAAACAGAAAAGCAGGATGTCCGGAAGGCTTTG < 41bp 0.485676965126769 0.846142691007278 0.86371225 0.86062276 prediction 0.692285382014556 Functional Gain - MTSS1 ENSG00000170873 CDS Human protein_coding chr8:125580694 chr8:125580690 nonsynonymous SNV 0.859 4 25 hm5C_associated_SNPs_99475 0 0 1 0 2 MTSS1 chr8:125580777 3'AG 125580777 Downstream 88bp
chr2 202093741 202093741 1 + C A STAD 202093737 + 202093717 202093757 41 GCTAAACAGATCTCAGCAACCTCCCTGCCCACGGCCATCTC GCTAAACAGATCTCAGCAACCTCCATGCCCACGGCCATCTC < 41bp 0.509796563526099 0.855894023209192 0.2122463 0.95799863 prediction 0.692194919366186 Functional Gain - CASP10 ENSG00000003400 CDS Human protein_coding chr2:202093737 chr2:202093741 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_99477 0 0 0 0 1 CASP10 chr2:202093656 3'AG 202093656 Downstream 86bp
chr16 28997985 28997985 1 + C A UCEC 28997981 + 28997961 28998001 41 TGTGTCGTTACCCCCAGAACCAGCCTGTGAGGATGCGGATG TGTGTCGTTACCCCCAGAACCAGCATGTGAGGATGCGGATG < 41bp 0.521912406214102 0.86779758829528 0.16008195 0.28667438 prediction 0.691770364162354 Functional Gain - LAT ENSG00000213658 CDS Human protein_coding chr16:28997981 chr16:28997985 synonymous SNV . 0 25 hm5C_associated_SNPs_99480 0 0 1 0 3 LAT chr16:28997890 3'AG 28997890 Downstream 96bp
chr16 28997985 28997985 1 + C A UCEC 28997981 + 28997961 28998001 41 TGTGTCGTTACCCCCAGAACCAGCCTGTGAGGATGCGGATG TGTGTCGTTACCCCCAGAACCAGCATGTGAGGATGCGGATG < 41bp 0.521912406214102 0.86779758829528 0.16008195 0.28667438 prediction 0.691770364162354 Functional Gain - LAT ENSG00000213658 CDS Human protein_coding chr16:28997981 chr16:28997985 synonymous SNV . 0 25 hm5C_associated_SNPs_99480 0 0 1 0 3 LAT chr16:28997978 3'AG 28997978 Downstream 8bp
chr16 28997985 28997985 1 + C A UCEC 28997981 + 28997961 28998001 41 TGTGTCGTTACCCCCAGAACCAGCCTGTGAGGATGCGGATG TGTGTCGTTACCCCCAGAACCAGCATGTGAGGATGCGGATG < 41bp 0.521912406214102 0.86779758829528 0.16008195 0.28667438 prediction 0.691770364162354 Functional Gain - LAT ENSG00000213658 CDS Human protein_coding chr16:28997981 chr16:28997985 synonymous SNV . 0 25 hm5C_associated_SNPs_99480 0 0 1 0 3 LAT chr16:28998035 5'GT 28998035 Upstream 51bp
chr22 31008891 31008891 1 + C A LUSC 31008887 + 31008867 31008907 41 TTCAGCGAGGATGACGGTGACTGCCAGGGCAAGCCTTCCAT TTCAGCGAGGATGACGGTGACTGCAAGGGCAAGCCTTCCAT < 41bp 0.536549977771903 0.882255090463797 0.052906543 0.4317054 prediction 0.691410225383788 Functional Gain - TCN2 ENSG00000185339 CDS Human protein_coding chr22:31008887 chr22:31008891 nonsynonymous SNV 0.034 0 25 hm5C_associated_SNPs_99484 0 0 0 0 2 TCN2 chr22:31008860 3'AG 31008860 Downstream 32bp
chr22 31008891 31008891 1 + C A LUSC 31008887 + 31008867 31008907 41 TTCAGCGAGGATGACGGTGACTGCCAGGGCAAGCCTTCCAT TTCAGCGAGGATGACGGTGACTGCAAGGGCAAGCCTTCCAT < 41bp 0.536549977771903 0.882255090463797 0.052906543 0.4317054 prediction 0.691410225383788 Functional Gain - TCN2 ENSG00000185339 CDS Human protein_coding chr22:31008887 chr22:31008891 nonsynonymous SNV 0.034 0 25 hm5C_associated_SNPs_99484 0 0 0 0 2 TCN2 chr22:31008948 5'GT 31008948 Upstream 58bp
chr3 183756296 183756296 1 + C A LUAD 183756292 + 183756272 183756312 41 ACGTGGCCACCACCCAGCCCCTACCTCTGCCTCGGTGGCTC ACGTGGCCACCACCCAGCCCCTACATCTGCCTCGGTGGCTC < 41bp 0.456327697865764 0.845686330343374 0.02924937 0.55002904 prediction 0.691372660686747 Functional Gain - HTR3D ENSG00000186090 CDS Human protein_coding chr3:183756292 chr3:183756296 nonsynonymous SNV 0.006 4 25 hm5C_associated_SNPs_99485 0 0 0 0 1 HTR3D chr3:183756197 3'AG 183756197 Downstream 100bp
chr1 78001620 78001620 1 + C A STAD 78001616 + 78001596 78001636 41 TCCAAAGGAGCCGGAGCAGCCTGCCTGTGGACGACACCACC TCCAAAGGAGCCGGAGCAGCCTGCATGTGGACGACACCACC < 41bp 0.52349646654831 0.869153003000955 0.16297087 0.43888533 prediction 0.691313072905289 Functional Gain - AK5 ENSG00000154027 CDS Human protein_coding chr1:78001616 chr1:78001620 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_99486 0 0 0 0 1 AK5 chr1:78001532 3'AG 78001532 Downstream 89bp
chrX 99919896 99919896 1 + C A rs150552508 99919892 + 99919872 99919912 41 TACCACCTGGAAGGTGATCGCAGCCGAATCTGCATGGAAGA TACCACCTGGAAGGTGATCGCAGCAGAATCTGCATGGAAGA < 41bp 0.518095697029051 0.863648780767814 0.47422627 0.67367876 prediction 0.691106167477526 Functional Gain - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99919892 chrX:99919896 synonymous SNV . 0 25 hm5C_associated_SNPs_99487 2 0 0 0 1 SRPX2 chrX:99919947 5'GT 99919947 Upstream 52bp
chr6 133783575 133783575 1 + C A LUSC 133783571 + 133783551 133783591 41 GCAGCAGCCAGCCGTCTACACAGCCTACTCACAGACAGGAC GCAGCAGCCAGCCGTCTACACAGCATACTCACAGACAGGAC < 41bp 0.476892980527633 0.845492902202215 0.1253646 0.112921864 prediction 0.690985804404429 Functional Gain - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133783571 chr6:133783575 synonymous SNV . 0 25 hm5C_associated_SNPs_99488 0 0 0 0 1 EYA4 chr6:133783615 5'GT 133783615 Upstream 41bp
chr19 54653390 54653390 1 + C A UCEC 54653386 + 54653366 54653406 41 GACCCAGCCTCCTGGTGCCACTGCCTGTGAATCCTCCCAGC GACCCAGCCTCCTGGTGCCACTGCATGTGAATCCTCCCAGC < 41bp 0.462041841609673 0.84544665125167 0.13278154 0.12313968 prediction 0.690893302503341 Functional Gain - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54653386 chr19:54653390 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_99490 0 0 1 0 1 CNOT3 chr19:54653295 3'AG 54653295 Downstream 96bp
chr2 79254235 79254235 1 + C A LUAD 79254231 + 79254211 79254251 41 GCTGAGGGATCCTTCGTGTCCTCCCTGGTGAGGAGCATTAG GCTGAGGGATCCTTCGTGTCCTCCATGGTGAGGAGCATTAG < 41bp 0.539282175439367 0.884565097796079 0.08163983 0.9270375 prediction 0.690565844713424 Functional Gain - REG3G ENSG00000143954 CDS Human protein_coding chr2:79254231 chr2:79254235 nonsynonymous SNV 0.022 0 25 hm5C_associated_SNPs_99492 0 0 0 0 2 REG3G chr2:79254160 3'AG 79254160 Downstream 76bp
chr2 79254235 79254235 1 + C A LUAD 79254231 + 79254211 79254251 41 GCTGAGGGATCCTTCGTGTCCTCCCTGGTGAGGAGCATTAG GCTGAGGGATCCTTCGTGTCCTCCATGGTGAGGAGCATTAG < 41bp 0.539282175439367 0.884565097796079 0.08163983 0.9270375 prediction 0.690565844713424 Functional Gain - REG3G ENSG00000143954 CDS Human protein_coding chr2:79254231 chr2:79254235 nonsynonymous SNV 0.022 0 25 hm5C_associated_SNPs_99492 0 0 0 0 2 REG3G chr2:79254297 5'GT 79254297 Upstream 63bp
chr4 110754440 110754440 1 + C A STAD 110754436 + 110754416 110754456 41 CATTGGCTATCCCATGTCTGCTGCCTCAGATCTGTATGGAA CATTGGCTATCCCATGTCTGCTGCATCAGATCTGTATGGAA < 41bp 0.474191828433652 0.845281688591983 0.058793217 0.07250011 prediction 0.690563377183966 Functional Gain - RRH ENSG00000180245 CDS Human protein_coding chr4:110754436 chr4:110754440 synonymous SNV . 0 25 hm5C_associated_SNPs_99493 0 0 1 0 1 RRH chr4:110754485 5'GT 110754485 Upstream 46bp
chr14 101200700 101200700 1 + C A LUSC 101200696 + 101200676 101200716 41 GGCTTCATCGACAAGACCTGCAGCCGCCCGGTGACCAACTG GGCTTCATCGACAAGACCTGCAGCAGCCCGGTGACCAACTG < 41bp 0.512773497364025 0.857973797212406 0.19563219 0.2604733 prediction 0.690400599696763 Functional Gain - DLK1 ENSG00000185559 CDS Human protein_coding chr14:101200696 chr14:101200700 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_99497 0 0 1 0 1 DLK1 chr14:101200765 5'GT 101200765 Upstream 66bp
chr1 155014027 155014027 1 + C A OV 155014023 + 155014003 155014043 41 GCAGGGAGGCCCGCCAAGCCCCAGCCTCCAGACTCCACCTG GCAGGGAGGCCCGCCAAGCCCCAGACTCCAGACTCCACCTG < 41bp 0.524516493936571 0.869531107975909 0.0144613385 0.03286785 prediction 0.690029228078676 Functional Gain - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155014023 chr1:155014027 nonsynonymous SNV 0.031 0 25 hm5C_associated_SNPs_99500 0 0 0 0 1 DCST1 chr1:155014089 5'GT 155014089 Upstream 63bp
chr7 141424954 141424954 1 + C A rs45535636 141424950 + 141424930 141424970 41 TATCCGCAAGGGTAACTTTCCGGACGTTCCTCAGGAGCTCT TATCCGCAAGGGTAACTTTCCGGAAGTTCCTCAGGAGCTCT < 41bp 0.511279488795142 0.856154852903761 0.80584514 0.6924802 prediction 0.689750728217239 Functional Gain - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141424950 chr7:141424954 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_99501 0 0 0 0 1 WEE2 chr7:141424996 5'GT 141424996 Upstream 43bp
chr19 36637199 36637199 1 + C A OV 36637195 + 36637175 36637215 41 AACTTCATCAGCTGCTTGGTCAGGCTGGACGCCATGTTCCG AACTTCATCAGCTGCTTGGTCAGGATGGACGCCATGTTCCG < 41bp 0.487863847934759 0.844848120157063 0.39271852 0.35110095 prediction 0.689696240314127 Functional Gain - CAPNS1 ENSG00000126247 CDS Human protein_coding chr19:36637195 chr19:36637199 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99502 0 0 1 0 1 CAPNS1 chr19:36637214 5'GT 36637214 Upstream 16bp
chr22 25623935 25623935 1 + C A SKCM 25623931 + 25623911 25623951 41 CGAAGGACGGACTCCCTCAGCTCCCTGAGGCCCATCAAAGT CGAAGGACGGACTCCCTCAGCTCCATGAGGCCCATCAAAGT < 41bp 0.443508952935166 0.84484786792352 0.37617162 0.92238903 prediction 0.689695735847039 Functional Gain - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25623931 chr22:25623935 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_99503 0 0 0 0 1 CRYBB2 chr22:25623952 5'GT 25623952 Upstream 18bp
chr22 29654850 29654850 1 + C A LUAD 29654846 + 29654826 29654866 41 GCGGGCCCTGCCGGCACAGGCACCCCCAGCCTCCTTCGGGG GCGGGCCCTGCCGGCACAGGCACCACCAGCCTCCTTCGGGG < 41bp 0.510346026802026 0.855160806964292 0.5352342 0.50971085 prediction 0.689629560324532 Functional Gain - EMID1 ENSG00000186998 CDS Human protein_coding chr22:29654846 chr22:29654850 nonsynonymous SNV 0.953 4 25 hm5C_associated_SNPs_99505 0 0 0 0 1 EMID1 chr22:29654806 3'AG 29654806 Downstream 45bp
chr1 17265571 17265571 1 + C A LUAD 17265567 + 17265547 17265587 41 ACCCCGCCGAGGCCCCTCCCCGGCCTGCTCAGACTCCTCCA ACCCCGCCGAGGCCCCTCCCCGGCATGCTCAGACTCCTCCA < 41bp 0.510169776440444 0.854839580226019 0.606144 0.39870596 prediction 0.68933960757115 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17265567 chr1:17265571 synonymous SNV . 0 25 hm5C_associated_SNPs_99507 0 0 0 0 1 CROCC chr1:17265637 5'GT 17265637 Upstream 67bp
chr1 28862784 28862784 1 + C A rs182979681 28862780 + 28862760 28862800 41 GGCCTTTCCCCCAGGAACTCCGGGCACAGAATCTTGCTTCA GGCCTTTCCCCCAGGAACTCCGGGAACAGAATCTTGCTTCA < 41bp 0.472557892710426 0.844604881568809 0.76695216 0.8861176 prediction 0.689209763137617 Functional Gain - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28862780 chr1:28862784 synonymous SNV . 0 25 hm5C_associated_SNPs_99510 0 0 1 0 1 RCC1 chr1:28862774 3'AG 28862774 Downstream 11bp
chr12 58017834 58017834 1 + C A LUSC 58017830 + 58017810 58017850 41 TCCAGCATGCGCCAGGTGTTCTGCCAGATGCAGGAACTTCC TCCAGCATGCGCCAGGTGTTCTGCAAGATGCAGGAACTTCC < 41bp 0.445801206630887 0.844512535897429 0.15397376 0.14486447 prediction 0.689025071794859 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58017830 chr12:58017834 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_99512 0 0 0 0 2 SLC26A10 chr12:58017786 3'AG 58017786 Downstream 49bp
chr12 58017834 58017834 1 + C A LUSC 58017830 + 58017810 58017850 41 TCCAGCATGCGCCAGGTGTTCTGCCAGATGCAGGAACTTCC TCCAGCATGCGCCAGGTGTTCTGCAAGATGCAGGAACTTCC < 41bp 0.445801206630887 0.844512535897429 0.15397376 0.14486447 prediction 0.689025071794859 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58017830 chr12:58017834 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_99512 0 0 0 0 2 SLC26A10 chr12:58017881 5'GT 58017881 Upstream 48bp
chr22 32215120 32215120 1 + C A THCA 32215116 + 32215096 32215136 41 TGTTCGACCTGGTGGATACACGCCCCAGAGAGCACTGATTA TGTTCGACCTGGTGGATACACGCCACAGAGAGCACTGATTA < 41bp 0.517219608709376 0.861608323382266 0.20483801 0.10521704 prediction 0.688777429345781 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32215116 chr22:32215120 synonymous SNV . 0 25 hm5C_associated_SNPs_99515 0 0 1 2 1 DEPDC5 chr22:32215211 5'GT 32215211 Upstream 92bp
chr7 150269621 150269621 1 + C A LUSC 150269617 + 150269597 150269637 41 AGTTTCATGATTCTCATATTCACCCGGAAAGATGACTTAGG AGTTTCATGATTCTCATATTCACCAGGAAAGATGACTTAGG < 41bp 0.473434850456586 0.844382435867347 0.03294617 0.056251556 prediction 0.688764871734694 Functional Gain - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150269617 chr7:150269621 synonymous SNV . 0 25 hm5C_associated_SNPs_99516 0 0 0 0 1 GIMAP4 chr7:150269567 3'AG 150269567 Downstream 55bp
chr6 35754883 35754883 1 + C A PAAD 35754879 + 35754859 35754899 41 GCGGAGAAGGGGTCCGAGGGCAGTCTGTGTCAAACGCAGGT GCGGAGAAGGGGTCCGAGGGCAGTATGTGTCAAACGCAGGT < 41bp 0.502921180429384 0.847097896980136 0.31867743 0.39811918 prediction 0.688353433101505 Functional Gain - CLPSL1 ENSG00000204140 CDS Human protein_coding chr6:35754879 chr6:35754883 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_99521 0 0 0 0 1 CLPSL1 chr6:35754897 5'GT 35754897 Upstream 15bp
chr17 12887912 12887912 1 + C A UCEC 12887908 + 12887888 12887928 41 TGGCCAGCCGGGGGCTATGGCAGACCAGTCCGCTGGCCAGC TGGCCAGCCGGGGGCTATGGCAGAACAGTCCGCTGGCCAGC < 41bp 0.49562074231181 0.844056570832541 0.9173059 0.8269512 prediction 0.688113141665082 Functional Gain - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12887908 chr17:12887912 nonsynonymous SNV 0.100 0 25 hm5C_associated_SNPs_99525 0 0 0 0 1 ARHGAP44 chr17:12887848 3'AG 12887848 Downstream 65bp
chr5 167919806 167919806 1 + C A GBM 167919802 + 167919782 167919822 41 TGCTAGTGACACCAAGTCAGCAGGCCAAGTTTGGGGACTAT TGCTAGTGACACCAAGTCAGCAGGACAAGTTTGGGGACTAT < 41bp 0.510306511822036 0.854352847869883 0.5520785 0.49553382 prediction 0.688092672095693 Functional Gain - RARS ENSG00000113643 CDS Human protein_coding chr5:167919802 chr5:167919806 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_99527 0 0 1 0 1 RARS chr5:167919852 5'GT 167919852 Upstream 47bp
chr11 61017418 61017418 1 + C A UCEC 61017414 + 61017394 61017434 41 GTCAGCTGCTCAGCCATCAGCAGCCTGCCCGACATCGTCTT GTCAGCTGCTCAGCCATCAGCAGCATGCCCGACATCGTCTT < 41bp 0.468974261071871 0.843920980678131 0.48502132 0.2946945 prediction 0.687841961356263 Functional Gain - PGA5 ENSG00000229183;ENSG00000256713 CDS Human other chr11:61017414 chr11:61017418 nonsynonymous SNV 0.662 1 25 hm5C_associated_SNPs_99531 0 0 0 0 2 PGA5 chr11:61017388 3'AG 61017388 Downstream 31bp
chr11 61017418 61017418 1 + C A UCEC 61017414 + 61017394 61017434 41 GTCAGCTGCTCAGCCATCAGCAGCCTGCCCGACATCGTCTT GTCAGCTGCTCAGCCATCAGCAGCATGCCCGACATCGTCTT < 41bp 0.468974261071871 0.843920980678131 0.48502132 0.2946945 prediction 0.687841961356263 Functional Gain - PGA5 ENSG00000229183;ENSG00000256713 CDS Human other chr11:61017414 chr11:61017418 nonsynonymous SNV 0.662 1 25 hm5C_associated_SNPs_99531 0 0 0 0 2 PGA5 chr11:61017486 5'GT 61017486 Upstream 69bp
chr1 1390852 1390852 1 + C A rs200476672 1390848 + 1390828 1390868 41 CTTCCCCTCCAGCAGGTCAGCCGGCGGCTCCTCAGTCGACC CTTCCCCTCCAGCAGGTCAGCCGGAGGCTCCTCAGTCGACC < 41bp 0.489078870851068 0.843817461085557 0.9150123 0.922186 prediction 0.687634922171114 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1390848 chr1:1390852 synonymous SNV . 0 25 hm5C_associated_SNPs_99540 0 0 0 0 1 ATAD3C chr1:1390840 3'AG 1390840 Downstream 13bp
chr5 177019627 177019627 1 + C A UCEC 177019623 + 177019603 177019643 41 AGCAGCGGGAGGAGTACCAGCCGGCCACCCCGGGGCTTGGC AGCAGCGGGAGGAGTACCAGCCGGACACCCCGGGGCTTGGC < 41bp 0.481947018619876 0.84380334575698 0.80121803 0.8182544 prediction 0.687606691513961 Functional Gain - TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019623 chr5:177019627 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_99541 0 0 1 0 2 TMED9 chr5:177019576 3'AG 177019576 Downstream 52bp
chr5 177019627 177019627 1 + C A UCEC 177019623 + 177019603 177019643 41 AGCAGCGGGAGGAGTACCAGCCGGCCACCCCGGGGCTTGGC AGCAGCGGGAGGAGTACCAGCCGGACACCCCGGGGCTTGGC < 41bp 0.481947018619876 0.84380334575698 0.80121803 0.8182544 prediction 0.687606691513961 Functional Gain - TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019623 chr5:177019627 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_99541 0 0 1 0 2 TMED9 chr5:177019676 5'GT 177019676 Upstream 50bp
chrX 134683590 134683590 1 + C A LUAD 134683586 + 134683566 134683606 41 GATGGACTTATGGATTCATCCAGGCCAAGCAATTCATTTGC GATGGACTTATGGATTCATCCAGGACAAGCAATTCATTTGC < 41bp 0.492074685025587 0.8438009041627 0.45191354 0.2111063 prediction 0.6876018083254 Functional Gain - INTS6L ENSG00000165359 CDS Human protein_coding chrX:134683586 chrX:134683590 nonsynonymous SNV 0.990 0 25 hm5C_associated_SNPs_99542 0 0 0 0 1 INTS6L chrX:134683567 3'AG 134683567 Downstream 24bp
chr1 50661397 50661397 1 + C A rs144250728 50661393 + 50661373 50661413 41 TCCAGCCAGGCCCTGCTCTCCCAGCTCTACCAGTCCCCCAA TCCAGCCAGGCCCTGCTCTCCCAGATCTACCAGTCCCCCAA < 41bp 0.515785381664047 0.859541737473648 0.55063 0.7767732 prediction 0.687512711619203 Functional Gain - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50661393 chr1:50661397 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_99545 0 0 0 0 1 ELAVL4 chr1:50661458 5'GT 50661458 Upstream 62bp
chr1 26355757 26355757 1 + C A rs116456758 26355753 + 26355733 26355773 41 GGCCACCGTCCCGAGGCTGCCTCGCGCTTCCTCCAAGCCCT GGCCACCGTCCCGAGGCTGCCTCGAGCTTCCTCCAAGCCCT < 41bp 0.537237494546997 0.880970075799242 0.11429903 0.48884663 prediction 0.68746516250449 Functional Gain - EXTL1 ENSG00000158008 CDS Human protein_coding chr1:26355753 chr1:26355757 nonsynonymous SNV 0.184 2 25 hm5C_associated_SNPs_99546 0 0 0 0 2 EXTL1 chr1:26355684 3'AG 26355684 Downstream 74bp
chr1 26355757 26355757 1 + C A rs116456758 26355753 + 26355733 26355773 41 GGCCACCGTCCCGAGGCTGCCTCGCGCTTCCTCCAAGCCCT GGCCACCGTCCCGAGGCTGCCTCGAGCTTCCTCCAAGCCCT < 41bp 0.537237494546997 0.880970075799242 0.11429903 0.48884663 prediction 0.68746516250449 Functional Gain - EXTL1 ENSG00000158008 CDS Human protein_coding chr1:26355753 chr1:26355757 nonsynonymous SNV 0.184 2 25 hm5C_associated_SNPs_99546 0 0 0 0 2 EXTL1 chr1:26355777 5'GT 26355777 Upstream 21bp
chr22 45689190 45689190 1 + C A LGG 45689186 + 45689166 45689206 41 TTTGCTGGCGCCATTGCCCTCAGCCTCGTGTAAGTACCTGC TTTGCTGGCGCCATTGCCCTCAGCATCGTGTAAGTACCTGC < 41bp 0.476901231226412 0.843678482151813 0.3538819 0.3480846 prediction 0.687356964303626 Functional Gain - UPK3A ENSG00000100373 CDS Human protein_coding chr22:45689186 chr22:45689190 nonsynonymous SNV 0.139 0 25 hm5C_associated_SNPs_99548 0 0 1 0 1 UPK3A chr22:45689194 5'GT 45689194 Upstream 5bp
chr13 113973791 113973791 1 + C A CESC 113973787 + 113973767 113973807 41 CTCCACTGCACCTGCAGAGACACGCTGTGAACAAGACAGGC CTCCACTGCACCTGCAGAGACACGATGTGAACAAGACAGGC < 41bp 0.474340881364854 0.843677391404254 0.08400276 0.20387363 prediction 0.687354782808508 Functional Gain - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113973787 chr13:113973791 synonymous SNV . 0 25 hm5C_associated_SNPs_99549 0 0 1 0 1 LAMP1 chr13:113973784 3'AG 113973784 Downstream 8bp
chr2 27373134 27373134 1 + C A LUAD 27373130 + 27373110 27373150 41 GTTGGACGTGCTGGTGCTCGCCGCCAGCTACATAGCCCACC GTTGGACGTGCTGGTGCTCGCCGCAAGCTACATAGCCCACC < 41bp 0.512793428673251 0.856459004847762 0.40189993 0.918026 prediction 0.687331152349023 Functional Gain - TCF23 ENSG00000163792 CDS Human protein_coding chr2:27373130 chr2:27373134 synonymous SNV . 0 25 hm5C_associated_SNPs_99551 0 0 0 0 1 TCF23 chr2:27373233 5'GT 27373233 Upstream 100bp
chr19 16338459 16338459 1 + C A rs143380976 16338455 + 16338435 16338475 41 CCGCACCATCTCCTTCATCCCACCCGACGGCGAGTTCGAGC CCGCACCATCTCCTTCATCCCACCAGACGGCGAGTTCGAGC < 41bp 0.455425882909564 0.843647504101066 0.034637988 0.029158294 prediction 0.687295008202132 Functional Gain - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16338455 chr19:16338459 synonymous SNV . 0 25 hm5C_associated_SNPs_99552 0 0 1 0 1 AP1M1 chr19:16338501 5'GT 16338501 Upstream 43bp
chr17 61613156 61613156 1 + C A LUSC 61613152 + 61613132 61613172 41 TTCTTGCTCATGTGCACCTTCGCGCTCATAGCGCACTGGCT TTCTTGCTCATGTGCACCTTCGCGATCATAGCGCACTGGCT < 41bp 0.461386154007934 0.843616112127826 0.55783564 0.3955868 prediction 0.687232224255651 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61613152 chr17:61613156 nonsynonymous SNV 0.924 5 25 hm5C_associated_SNPs_99554 0 0 1 0 1 KCNH6 chr17:61613184 5'GT 61613184 Upstream 29bp
chr15 40675159 40675159 1 + C A LUAD 40675155 + 40675135 40675175 41 GTTTCTATTTGAAACCCAGGCGGCCGACTTAGCCGGTGGCA GTTTCTATTTGAAACCCAGGCGGCAGACTTAGCCGGTGGCA < 41bp 0.515107239933333 0.85860433303178 0.6756644 0.8047209 prediction 0.686994186196894 Functional Gain - KNSTRN ENSG00000128944 CDS Human protein_coding chr15:40675155 chr15:40675159 synonymous SNV . 0 25 hm5C_associated_SNPs_99559 0 0 1 0 1 KNSTRN chr15:40675245 5'GT 40675245 Upstream 87bp
chr11 126146096 126146096 1 + C A STAD 126146092 + 126146072 126146112 41 GCACCCTGCAGGGCACCAAGCTACCTGTGGAGCCGAGGAAA GCACCCTGCAGGGCACCAAGCTACATGTGGAGCCGAGGAAA < 41bp 0.541985045280327 0.885301213710026 0.29188487 0.62017363 prediction 0.686632336859399 Functional Gain - FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126146092 chr11:126146096 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_99561 0 0 1 0 1 FOXRED1 chr11:126146114 5'GT 126146114 Upstream 19bp
chr7 150267070 150267070 1 + C A SARC 150267066 + 150267046 150267086 41 TGGTGAGAGGGCATTCAGTGCTCCCCAGACCAGGCTGCAGG TGGTGAGAGGGCATTCAGTGCTCCACAGACCAGGCTGCAGG < 41bp 0.473158673918606 0.843269104274812 0.13173604 0.7977843 prediction 0.686538208549623 Functional Gain - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150267066 chr7:150267070 synonymous SNV . 0 25 hm5C_associated_SNPs_99563 0 0 0 0 2 GIMAP4 chr7:150266976 3'AG 150266976 Downstream 95bp
chr7 150267070 150267070 1 + C A SARC 150267066 + 150267046 150267086 41 TGGTGAGAGGGCATTCAGTGCTCCCCAGACCAGGCTGCAGG TGGTGAGAGGGCATTCAGTGCTCCACAGACCAGGCTGCAGG < 41bp 0.473158673918606 0.843269104274812 0.13173604 0.7977843 prediction 0.686538208549623 Functional Gain - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150267066 chr7:150267070 synonymous SNV . 0 25 hm5C_associated_SNPs_99563 0 0 0 0 2 GIMAP4 chr7:150267089 5'GT 150267089 Upstream 20bp
chr19 58016146 58016146 1 + C A OV 58016142 + 58016122 58016162 41 TGCTGGAGAACTTTACACTTCTGGCCTCTCTGGGTAAGGTT TGCTGGAGAACTTTACACTTCTGGACTCTCTGGGTAAGGTT < 41bp 0.480069997929988 0.843268815729243 0.23844871 0.31407154 prediction 0.686537631458486 Functional Gain - ZNF773 ENSG00000152439 CDS Human protein_coding chr19:58016142 chr19:58016146 nonsynonymous SNV 0.812 3 25 hm5C_associated_SNPs_99564 0 0 0 0 1 ZNF773 chr19:58016154 5'GT 58016154 Upstream 9bp
chr20 21695213 21695213 1 + C A LUAD 21695209 + 21695189 21695229 41 TCGACCTCCTAGGGGCAGCTCTCCCCGGACCCGAGCCCGGA TCGACCTCCTAGGGGCAGCTCTCCACGGACCCGAGCCCGGA < 41bp 0.526891401383044 0.870127510179894 0.51084363 0.95675325 prediction 0.686472217593699 Functional Gain - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21695209 chr20:21695213 synonymous SNV . 0 25 hm5C_associated_SNPs_99565 0 0 0 0 1 PAX1 chr20:21695119 3'AG 21695119 Downstream 95bp
chr9 27169605 27169605 1 + C A LUAD 27169601 + 27169581 27169621 41 AGGAGGAAACCTCTTCACCTCGGCCTTCACCAGGCTGATAG AGGAGGAAACCTCTTCACCTCGGCATTCACCAGGCTGATAG < 41bp 0.52870355725036 0.871927945429716 0.65341 0.5460899 prediction 0.686448776358711 Functional Gain - TEK ENSG00000120156 CDS Human protein_coding chr9:27169601 chr9:27169605 synonymous SNV . 0 25 hm5C_associated_SNPs_99566 0 0 0 0 1 TEK chr9:27169627 5'GT 27169627 Upstream 23bp
chr21 40871822 40871822 1 + C A SKCM 40871818 + 40871798 40871838 41 GCAGTGAAGATGTGGGCAACCTCCCTGAAGCCCAGGAGAAG GCAGTGAAGATGTGGGCAACCTCCATGAAGCCCAGGAGAAG < 41bp 0.54363301341359 0.886846995415773 0.06476024 0.94371855 prediction 0.686427964004366 Functional Gain - SH3BGR;WRB-SH3BGR ENSG00000185437 CDS Human protein_coding chr21:40871818 chr21:40871822 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_99567 0 0 1 0 2 SH3BGR;WRB-SH3BGR chr21:40871749 3'AG 40871749 Downstream 74bp
chr21 40871822 40871822 1 + C A SKCM 40871818 + 40871798 40871838 41 GCAGTGAAGATGTGGGCAACCTCCCTGAAGCCCAGGAGAAG GCAGTGAAGATGTGGGCAACCTCCATGAAGCCCAGGAGAAG < 41bp 0.54363301341359 0.886846995415773 0.06476024 0.94371855 prediction 0.686427964004366 Functional Gain - SH3BGR;WRB-SH3BGR ENSG00000185437 CDS Human protein_coding chr21:40871818 chr21:40871822 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_99567 0 0 1 0 2 SH3BGR;WRB-SH3BGR chr21:40871841 5'GT 40871841 Upstream 20bp
chr8 144457821 144457821 1 + C A rs144295575 144457817 + 144457797 144457837 41 CAAGGAGCTGCAGATGCGGACGGGCGCTGAGAACCTCTACA CAAGGAGCTGCAGATGCGGACGGGAGCTGAGAACCTCTACA < 41bp 0.490552322838083 0.843186933212071 0.5728619 0.86929506 prediction 0.686373866424142 Functional Gain - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144457817 chr8:144457821 synonymous SNV . 0 25 hm5C_associated_SNPs_99569 0 0 1 0 2 RHPN1 chr8:144457723 3'AG 144457723 Downstream 99bp
chr8 144457821 144457821 1 + C A rs144295575 144457817 + 144457797 144457837 41 CAAGGAGCTGCAGATGCGGACGGGCGCTGAGAACCTCTACA CAAGGAGCTGCAGATGCGGACGGGAGCTGAGAACCTCTACA < 41bp 0.490552322838083 0.843186933212071 0.5728619 0.86929506 prediction 0.686373866424142 Functional Gain - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144457817 chr8:144457821 synonymous SNV . 0 25 hm5C_associated_SNPs_99569 0 0 1 0 2 RHPN1 chr8:144457838 5'GT 144457838 Upstream 18bp
chr15 101606890 101606890 1 + C A rs2959197 101606886 + 101606866 101606906 41 CATTGGCCTGGAGAAGGATTCTGGCGCCCAGCGGGGCCGAG CATTGGCCTGGAGAAGGATTCTGGAGCCCAGCGGGGCCGAG < 41bp 0.516264651930371 0.859438765235846 0.74331135 0.80802953 prediction 0.686348226610949 Functional Gain - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101606886 chr15:101606890 synonymous SNV . 0 25 hm5C_associated_SNPs_99570 0 0 0 0 2 LRRK1 chr15:101606845 3'AG 101606845 Downstream 46bp
chr15 101606890 101606890 1 + C A rs2959197 101606886 + 101606866 101606906 41 CATTGGCCTGGAGAAGGATTCTGGCGCCCAGCGGGGCCGAG CATTGGCCTGGAGAAGGATTCTGGAGCCCAGCGGGGCCGAG < 41bp 0.516264651930371 0.859438765235846 0.74331135 0.80802953 prediction 0.686348226610949 Functional Gain - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101606886 chr15:101606890 synonymous SNV . 0 25 hm5C_associated_SNPs_99570 0 0 0 0 2 LRRK1 chr15:101606946 5'GT 101606946 Upstream 57bp
chr13 101710340 101710340 1 - G T LUSC 101710344 - 101710324 101710364 41 AGGAGGAAGTCGGCAAGATGCAGCCGACGCAGGGAAACCCC AGGAGGAAGTCGGCAAGATGCAGCAGACGCAGGGAAACCCC < 41bp 0.507351600513068 0.850510436212188 0.79151535 0.8890885 prediction 0.686317671398239 Functional Gain - NALCN ENSG00000102452 CDS Human protein_coding chr13:101710344 chr13:101710340 synonymous SNV . 0 25 hm5C_associated_SNPs_99571 0 0 0 0 2 NALCN chr13:101710291 5'GT 101710291 Upstream 50bp
chr13 101710340 101710340 1 - G T LUSC 101710344 - 101710324 101710364 41 AGGAGGAAGTCGGCAAGATGCAGCCGACGCAGGGAAACCCC AGGAGGAAGTCGGCAAGATGCAGCAGACGCAGGGAAACCCC < 41bp 0.507351600513068 0.850510436212188 0.79151535 0.8890885 prediction 0.686317671398239 Functional Gain - NALCN ENSG00000102452 CDS Human protein_coding chr13:101710344 chr13:101710340 synonymous SNV . 0 25 hm5C_associated_SNPs_99571 0 0 0 0 2 NALCN chr13:101710408 3'AG 101710408 Downstream 69bp
chr9 140508526 140508526 1 + C A KIRP 140508522 + 140508502 140508542 41 GCCACCAAGAAGTTCTCCTACAAGCTGGTGAAGACGGGCAG GCCACCAAGAAGTTCTCCTACAAGATGGTGAAGACGGGCAG < 41bp 0.502221290490868 0.845299006629754 0.48488128 0.36886984 prediction 0.686155432277773 Functional Gain - ARRDC1 ENSG00000197070 CDS Human protein_coding chr9:140508522 chr9:140508526 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99574 0 0 1 0 1 ARRDC1 chr9:140508484 3'AG 140508484 Downstream 43bp
chr19 36352046 36352046 1 + T G LUSC 36352043 + 36352023 36352063 41 GGTGCTGGGCTCTGGAGCCACACTGCGTCTTCCGTCGGTGG GGTGCTGGGCTCTGGAGCCACACGGCGTCTTCCGTCGGTGG < 41bp 0.482122117970331 0.843071748788387 0.25246966 0.47794282 prediction 0.686143497576774 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36352043 chr19:36352046 nonsynonymous SNV 0.644 3 24 hm5C_associated_SNPs_99575 0 0 0 0 1 KIRREL2 chr19:36352024 3'AG 36352024 Downstream 23bp
chr8 99040013 99040013 1 + C A STAD 99040009 + 99039989 99040029 41 CCATTGTGTTCACCGACGGACGGGCTCAGGATGACGTCTCC CCATTGTGTTCACCGACGGACGGGATCAGGATGACGTCTCC < 41bp 0.520266503953569 0.863303367722789 0.074658096 0.33446157 prediction 0.68607372753844 Functional Gain - MATN2 ENSG00000132561 CDS Human protein_coding chr8:99040009 chr8:99040013 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_99576 0 0 0 0 1 MATN2 chr8:99040057 5'GT 99040057 Upstream 45bp
chr1 201861016 201861016 1 + C A rs2279681 201861012 + 201860992 201861032 41 TGCTGCCCCTTCAGTGATGCCAACCTTGGGAGATGCCCTCA TGCTGCCCCTTCAGTGATGCCAACATTGGGAGATGCCCTCA < 41bp 0.50262385637755 0.84563989258797 0.012760669 0.027886182 prediction 0.686032072420841 Functional Gain - SHISA4 ENSG00000198892 UTR3 Human protein_coding chr1:201861012 chr1:201861016 . . 0 25 hm5C_associated_SNPs_99577 0 0 0 1 1 SHISA4 chr1:201860928 3'AG 201860928 Downstream 89bp
chr11 129306690 129306690 1 + C A ACC 129306686 + 129306666 129306706 41 TATCCGCTCCTCTCGGTGATCACCCGCCAGCCCACTGTCAT TATCCGCTCCTCTCGGTGATCACCAGCCAGCCCACTGTCAT < 41bp 0.527737693923967 0.870746756321207 0.0908761 0.260654 prediction 0.686018124794481 Functional Gain - BARX2 ENSG00000043039 CDS Human protein_coding chr11:129306686 chr11:129306690 nonsynonymous SNV 0.983 3 25 hm5C_associated_SNPs_99578 0 0 1 0 1 BARX2 chr11:129306646 3'AG 129306646 Downstream 45bp
chr2 228680244 228680244 1 + C A HNSC 228680240 + 228680220 228680260 41 CCTAAATTTATTGTGGGCTTCACACGGCAGCTGGCCAATGA CCTAAATTTATTGTGGGCTTCACAAGGCAGCTGGCCAATGA < 41bp 0.475689177396464 0.842971835236239 0.052043825 0.22409192 prediction 0.685943670472477 Functional Gain - CCL20 ENSG00000115009 CDS Human protein_coding chr2:228680240 chr2:228680244 synonymous SNV . 0 25 hm5C_associated_SNPs_99579 0 0 1 0 3 CCL20 chr2:228680170 3'AG 228680170 Downstream 75bp
chr2 228680244 228680244 1 + C A HNSC 228680240 + 228680220 228680260 41 CCTAAATTTATTGTGGGCTTCACACGGCAGCTGGCCAATGA CCTAAATTTATTGTGGGCTTCACAAGGCAGCTGGCCAATGA < 41bp 0.475689177396464 0.842971835236239 0.052043825 0.22409192 prediction 0.685943670472477 Functional Gain - CCL20 ENSG00000115009 CDS Human protein_coding chr2:228680240 chr2:228680244 synonymous SNV . 0 25 hm5C_associated_SNPs_99579 0 0 1 0 3 CCL20 chr2:228680173 3'AG 228680173 Downstream 72bp
chr2 228680244 228680244 1 + C A HNSC 228680240 + 228680220 228680260 41 CCTAAATTTATTGTGGGCTTCACACGGCAGCTGGCCAATGA CCTAAATTTATTGTGGGCTTCACAAGGCAGCTGGCCAATGA < 41bp 0.475689177396464 0.842971835236239 0.052043825 0.22409192 prediction 0.685943670472477 Functional Gain - CCL20 ENSG00000115009 CDS Human protein_coding chr2:228680240 chr2:228680244 synonymous SNV . 0 25 hm5C_associated_SNPs_99579 0 0 1 0 3 CCL20 chr2:228680284 5'GT 228680284 Upstream 41bp
chr16 28965898 28965898 1 + C A LUSC 28965894 + 28965874 28965914 41 CTCTGCCCCCAGAGGCAGAGCTGGCAGATTCGAGTGGTCTC CTCTGCCCCCAGAGGCAGAGCTGGAAGATTCGAGTGGTCTC < 41bp 0.482109196448096 0.842963409622631 0.2608731 0.27080083 prediction 0.685926819245262 Functional Gain - NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28965894 chr16:28965898 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_99580 0 0 1 0 1 NFATC2IP chr16:28965886 3'AG 28965886 Downstream 13bp
chr16 2257253 2257253 1 + C A STAD 2257249 + 2257229 2257269 41 CCACATCTGGGACTTGAAAACAGACCACAACGAGCAGCTGA CCACATCTGGGACTTGAAAACAGAACACAACGAGCAGCTGA < 41bp 0.5082132298242 0.851095672186551 0.34757254 0.2929676 prediction 0.685764884724703 Functional Gain - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2257249 chr16:2257253 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99582 0 0 1 1 2 MLST8 chr16:2257194 3'AG 2257194 Downstream 60bp
chr16 2257253 2257253 1 + C A STAD 2257249 + 2257229 2257269 41 CCACATCTGGGACTTGAAAACAGACCACAACGAGCAGCTGA CCACATCTGGGACTTGAAAACAGAACACAACGAGCAGCTGA < 41bp 0.5082132298242 0.851095672186551 0.34757254 0.2929676 prediction 0.685764884724703 Functional Gain - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2257249 chr16:2257253 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99582 0 0 1 1 2 MLST8 chr16:2257346 5'GT 2257346 Upstream 94bp
chr1 11839005 11839005 1 + C A rs370523367 11839001 + 11838981 11839021 41 AGGTTCCCAGGGCCCCCACCCTCCCGGACACTCTCCAGGGG AGGTTCCCAGGGCCCCCACCCTCCAGGACACTCTCCAGGGG < 41bp 0.489661536379187 0.842866173404395 0.12846497 0.9369706 prediction 0.685732346808791 Functional Gain - C1orf167 ENSG00000215910 CDS Human protein_coding chr1:11839001 chr1:11839005 nonsynonymous SNV 0.010 0 25 hm5C_associated_SNPs_99584 0 0 0 0 1 C1orf167 chr1:11838983 3'AG 11838983 Downstream 23bp
chr20 2291017 2291017 1 + T G UCEC 2291014 + 2290994 2291034 41 TTCTCCCAGGGCGGCATCTCCTCTGTGAAACTTGGGACGTT TTCTCCCAGGGCGGCATCTCCTCGGTGAAACTTGGGACGTT < 41bp 0.513429161527544 0.856150096147712 0.23545101 0.83485436 prediction 0.685441869240336 Functional Gain - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2291014 chr20:2291017 synonymous SNV . 0 24 hm5C_associated_SNPs_99589 0 0 0 0 1 TGM3 chr20:2291063 5'GT 2291063 Upstream 47bp
chr7 29923497 29923497 1 + C A STAD 29923493 + 29923473 29923513 41 GACAGGGCAGGGCCCTGGCTCCCGCGCGCCCTCTCCCAGGC GACAGGGCAGGGCCCTGGCTCCCGAGCGCCCTCTCCCAGGC < 41bp 0.534075837629614 0.876653644096741 0.07407355 0.08475974 prediction 0.685155612934254 Functional Gain - WIPF3 ENSG00000122574 CDS Human protein_coding chr7:29923493 chr7:29923497 synonymous SNV . 0 25 hm5C_associated_SNPs_99598 0 0 1 0 1 WIPF3 chr7:29923466 3'AG 29923466 Downstream 32bp
chr15 57809027 57809027 1 + C A rs149779988 57809023 + 57809003 57809043 41 GCAACACTTCAGAGCAAGACCAGGCGGGGACTGAAATGCGC GCAACACTTCAGAGCAAGACCAGGAGGGGACTGAAATGCGC < 41bp 0.474631197249522 0.842501659409938 0.3898012 0.61312366 prediction 0.685003318819876 Functional Gain - CGNL1 ENSG00000128849 CDS Human protein_coding chr15:57809023 chr15:57809027 nonsynonymous SNV 0.128 0 25 hm5C_associated_SNPs_99601 0 0 0 0 1 CGNL1 chr15:57808978 3'AG 57808978 Downstream 50bp
chr15 50497527 50497527 1 + T G SKCM 50497524 + 50497504 50497544 41 GTCACTGTCATTCAGTATATCGGTGAACTGCTTCGGTATTT GTCACTGTCATTCAGTATATCGGGGAACTGCTTCGGTATTT < 41bp 0.51399970929743 0.856490685034712 0.37833562 0.92593503 prediction 0.684981951474565 Functional Gain - SLC27A2 ENSG00000140284 CDS Human protein_coding chr15:50497524 chr15:50497527 synonymous SNV . 0 24 hm5C_associated_SNPs_99603 0 0 0 0 2 SLC27A2 chr15:50497436 3'AG 50497436 Downstream 92bp
chr15 50497527 50497527 1 + T G SKCM 50497524 + 50497504 50497544 41 GTCACTGTCATTCAGTATATCGGTGAACTGCTTCGGTATTT GTCACTGTCATTCAGTATATCGGGGAACTGCTTCGGTATTT < 41bp 0.51399970929743 0.856490685034712 0.37833562 0.92593503 prediction 0.684981951474565 Functional Gain - SLC27A2 ENSG00000140284 CDS Human protein_coding chr15:50497524 chr15:50497527 synonymous SNV . 0 24 hm5C_associated_SNPs_99603 0 0 0 0 2 SLC27A2 chr15:50497560 5'GT 50497560 Upstream 34bp
chr17 42428520 42428520 1 + C A COAD 42428516 + 42428496 42428536 41 CCACGGACCTCCTCACTAAGCTGCCTGCGCACACAGGTACC CCACGGACCTCCTCACTAAGCTGCATGCGCACACAGGTACC < 41bp 0.463327482982299 0.842468520823497 0.26768076 0.26598263 prediction 0.684937041646993 Functional Gain - GRN ENSG00000030582 CDS Human protein_coding chr17:42428516 chr17:42428520 nonsynonymous SNV 0.032 3 25 hm5C_associated_SNPs_99605 0 0 1 0 1 GRN chr17:42428531 5'GT 42428531 Upstream 12bp
chr11 60105419 60105419 1 + C A UCEC 60105415 + 60105395 60105435 41 GCCATAGAGCCAAAGCCAGTCTGGCTGTAAGTATTTTTTAG GCCATAGAGCCAAAGCCAGTCTGGATGTAAGTATTTTTTAG < 41bp 0.504916669670721 0.847365701629741 0.054515123 0.1141811 prediction 0.68489806391804 Functional Gain - MS4A6E ENSG00000166926 CDS Human protein_coding chr11:60105415 chr11:60105419 nonsynonymous SNV 0.532 2 25 hm5C_associated_SNPs_99606 0 0 0 0 1 MS4A6E chr11:60105420 5'GT 60105420 Upstream 2bp
chr10 112760217 112760217 1 + C A UCEC 112760213 + 112760193 112760233 41 CGTCTTGGTCTGAGATATAACAGACTGTCAGCAATACCCAG CGTCTTGGTCTGAGATATAACAGAATGTCAGCAATACCCAG < 41bp 0.487847541632627 0.842420173289669 0.41267383 0.34469444 prediction 0.684840346579338 Functional Gain - SHOC2 ENSG00000108061 CDS Human protein_coding chr10:112760213 chr10:112760217 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_99607 0 0 1 0 2 SHOC2 chr10:112760173 3'AG 112760173 Downstream 45bp
chr10 112760217 112760217 1 + C A UCEC 112760213 + 112760193 112760233 41 CGTCTTGGTCTGAGATATAACAGACTGTCAGCAATACCCAG CGTCTTGGTCTGAGATATAACAGAATGTCAGCAATACCCAG < 41bp 0.487847541632627 0.842420173289669 0.41267383 0.34469444 prediction 0.684840346579338 Functional Gain - SHOC2 ENSG00000108061 CDS Human protein_coding chr10:112760213 chr10:112760217 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_99607 0 0 1 0 2 SHOC2 chr10:112760303 5'GT 112760303 Upstream 87bp
chrX 47045565 47045565 1 + C A UCEC 47045561 + 47045541 47045581 41 GAAGTACGGCGGCATATCCACAGCCTCTGTGTGAGTGGCTG GAAGTACGGCGGCATATCCACAGCATCTGTGTGAGTGGCTG < 41bp 0.48390464209691 0.842341573891099 0.40379918 0.33765888 prediction 0.684683147782198 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47045561 chrX:47045565 synonymous SNV . 0 25 hm5C_associated_SNPs_99609 0 0 1 0 1 RBM10 chrX:47045570 5'GT 47045570 Upstream 6bp
chr20 44422598 44422598 1 + C A UCEC 44422594 + 44422574 44422614 41 CCATCTCCATGGATCTCCTCCGAGCTGTCCTGCAGCCCAGC CCATCTCCATGGATCTCCTCCGAGATGTCCTGCAGCCCAGC < 41bp 0.527993913675473 0.870327957441405 0.507576 0.53040886 prediction 0.684668087531864 Functional Gain - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44422594 chr20:44422598 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_99611 0 0 1 0 2 DNTTIP1 chr20:44422560 3'AG 44422560 Downstream 39bp
chr20 44422598 44422598 1 + C A UCEC 44422594 + 44422574 44422614 41 CCATCTCCATGGATCTCCTCCGAGCTGTCCTGCAGCCCAGC CCATCTCCATGGATCTCCTCCGAGATGTCCTGCAGCCCAGC < 41bp 0.527993913675473 0.870327957441405 0.507576 0.53040886 prediction 0.684668087531864 Functional Gain - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44422594 chr20:44422598 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_99611 0 0 1 0 2 DNTTIP1 chr20:44422656 5'GT 44422656 Upstream 59bp
chr19 41726615 41726615 1 + C A STAD 41726611 + 41726591 41726631 41 GGTGCCCGGGGACTCACGGGCACCCTTCGGTGTCAGCTCCA GGTGCCCGGGGACTCACGGGCACCATTCGGTGTCAGCTCCA < 41bp 0.452624806341948 0.842204494969015 0.11593178 0.10392651 prediction 0.684408989938031 Functional Gain - AXL ENSG00000167601 CDS Human protein_coding chr19:41726611 chr19:41726615 nonsynonymous SNV 0.151 2 25 hm5C_associated_SNPs_99614 0 0 0 0 1 AXL chr19:41726541 3'AG 41726541 Downstream 75bp
chr1 180217446 180217446 1 + C A LUAD 180217442 + 180217422 180217462 41 ATTCCCCAGTGCGCTGGCTGCAACCAGCACATCCTGGACAA ATTCCCCAGTGCGCTGGCTGCAACAAGCACATCCTGGACAA < 41bp 0.465107162947467 0.842173870904089 0.02599001 0.089550555 prediction 0.684347741808178 Functional Gain - LHX4 ENSG00000121454 CDS Human protein_coding chr1:180217442 chr1:180217446 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_99617 0 0 1 0 1 LHX4 chr1:180217420 3'AG 180217420 Downstream 27bp
chr2 183943850 183943850 1 + C A BRCA 183943846 + 183943826 183943866 41 TTATGTGCAGGACCTTAGCTCGGACCTGCAAGTTGGCGTTA TTATGTGCAGGACCTTAGCTCGGAACTGCAAGTTGGCGTTA < 41bp 0.504144829590501 0.846272874837604 0.8794687 0.8870342 prediction 0.684256090494205 Functional Gain - DUSP19 ENSG00000162999 CDS Human protein_coding chr2:183943846 chr2:183943850 nonsynonymous SNV 0.994 3 25 hm5C_associated_SNPs_99618 0 0 1 0 1 DUSP19 chr2:183943887 5'GT 183943887 Upstream 38bp
chr16 49412473 49412473 1 + C A HNSC 49412469 + 49412449 49412489 41 GAAACACCTCAGCATGGTCCCTGGCAGCTACATCAAGGATG GAAACACCTCAGCATGGTCCCTGGAAGCTACATCAAGGATG < 41bp 0.520562337936314 0.862679008062923 0.018480211 0.079768 prediction 0.684233340253217 Functional Gain - C16orf78 ENSG00000166152 CDS Human protein_coding chr16:49412469 chr16:49412473 synonymous SNV . 0 25 hm5C_associated_SNPs_99619 0 0 0 0 2 C16orf78 chr16:49412381 3'AG 49412381 Downstream 93bp
chr16 49412473 49412473 1 + C A HNSC 49412469 + 49412449 49412489 41 GAAACACCTCAGCATGGTCCCTGGCAGCTACATCAAGGATG GAAACACCTCAGCATGGTCCCTGGAAGCTACATCAAGGATG < 41bp 0.520562337936314 0.862679008062923 0.018480211 0.079768 prediction 0.684233340253217 Functional Gain - C16orf78 ENSG00000166152 CDS Human protein_coding chr16:49412469 chr16:49412473 synonymous SNV . 0 25 hm5C_associated_SNPs_99619 0 0 0 0 2 C16orf78 chr16:49412504 5'GT 49412504 Upstream 32bp
chr1 100964777 100964777 1 + C A READ 100964773 + 100964753 100964793 41 ATCCTCCGACCCTCCTACACCGGGCTTTCTTCTTCTTCAGC ATCCTCCGACCCTCCTACACCGGGATTTCTTCTTCTTCAGC < 41bp 0.509702430192274 0.85177805250451 0.5635501 0.8341048 prediction 0.684151244624473 Functional Gain - CDC14A ENSG00000079335 CDS Human protein_coding chr1:100964773 chr1:100964777 nonsynonymous SNV 0.580 3 25 hm5C_associated_SNPs_99620 0 0 1 0 1 CDC14A chr1:100964818 5'GT 100964818 Upstream 42bp
chr19 55897974 55897974 1 + T G COAD 55897971 + 55897951 55897991 41 TGAAGGCCCGCAATTCCTTCCGCTACAACGGACTGATTCAC TGAAGGCCCGCAATTCCTTCCGCGACAACGGACTGATTCAC < 41bp 0.497817111503278 0.842034759189188 0.25765654 0.2809406 prediction 0.684069518378377 Functional Gain - RPL28 ENSG00000108107 CDS Human protein_coding chr19:55897971 chr19:55897974 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_99621 0 0 1 0 2 RPL28 chr19:55897938 3'AG 55897938 Downstream 37bp
chr19 55897974 55897974 1 + T G COAD 55897971 + 55897951 55897991 41 TGAAGGCCCGCAATTCCTTCCGCTACAACGGACTGATTCAC TGAAGGCCCGCAATTCCTTCCGCGACAACGGACTGATTCAC < 41bp 0.497817111503278 0.842034759189188 0.25765654 0.2809406 prediction 0.684069518378377 Functional Gain - RPL28 ENSG00000108107 CDS Human protein_coding chr19:55897971 chr19:55897974 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_99621 0 0 1 0 2 RPL28 chr19:55898061 5'GT 55898061 Upstream 88bp
chr1 206666410 206666410 1 + C A UCEC 206666406 + 206666386 206666426 41 CCTGGTTGGCTGTTCTGTGGCTGCCTGTAACACAGAAGCCC CCTGGTTGGCTGTTCTGTGGCTGCATGTAACACAGAAGCCC < 41bp 0.457455824393622 0.842013359458285 0.14095208 0.7161258 prediction 0.68402671891657 Functional Gain - IKBKE ENSG00000143466;ENSG00000162888 exonic;splicing Human other chr1:206666406 chr1:206666410 synonymous SNV . 0 25 hm5C_associated_SNPs_99622 0 0 0 0 1 IKBKE chr1:206666452 5'GT 206666452 Upstream 43bp
chr14 52186845 52186845 1 + C A PAAD 52186841 + 52186821 52186861 41 ACATGGACCAGCTGGAAAAACGGTCGCGGGCCAGCGGGAGC ACATGGACCAGCTGGAAAAACGGTAGCGGGCCAGCGGGAGC < 41bp 0.522533953111256 0.86437336347757 0.15027729 0.17489633 prediction 0.683678820732627 Functional Gain - FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52186841 chr14:52186845 stopgain 0.301 1 25 hm5C_associated_SNPs_99627 0 0 1 0 1 FRMD6 chr14:52186773 3'AG 52186773 Downstream 73bp
chr2 69204834 69204834 1 + T G LUAD 69204831 + 69204811 69204851 41 CAGCAGTCAGTGAGTGTCAACAATGAACACAATGTGGCCAA CAGCAGTCAGTGAGTGTCAACAAGGAACACAATGTGGCCAA < 41bp 0.499689490215832 0.841752941939755 0.051365465 0.6757944 prediction 0.683505883879509 Functional Gain - GKN1 ENSG00000169605 CDS Human protein_coding chr2:69204831 chr2:69204834 nonsynonymous SNV 0.984 1 24 hm5C_associated_SNPs_99633 0 0 0 0 2 GKN1 chr2:69204769 3'AG 69204769 Downstream 66bp
chr2 69204834 69204834 1 + T G LUAD 69204831 + 69204811 69204851 41 CAGCAGTCAGTGAGTGTCAACAATGAACACAATGTGGCCAA CAGCAGTCAGTGAGTGTCAACAAGGAACACAATGTGGCCAA < 41bp 0.499689490215832 0.841752941939755 0.051365465 0.6757944 prediction 0.683505883879509 Functional Gain - GKN1 ENSG00000169605 CDS Human protein_coding chr2:69204831 chr2:69204834 nonsynonymous SNV 0.984 1 24 hm5C_associated_SNPs_99633 0 0 0 0 2 GKN1 chr2:69204906 5'GT 69204906 Upstream 73bp
chr11 64940678 64940678 1 + C A STAD 64940674 + 64940654 64940694 41 TCTTCCCAAAGCCTCCGGCACGCCCTGGGCACTGAAGCTCT TCTTCCCAAAGCCTCCGGCACGCCATGGGCACTGAAGCTCT < 41bp 0.495002807372555 0.841743262140747 0.021463662 0.2475647 prediction 0.683486524281494 Functional Gain - SPDYC ENSG00000204710 CDS Human protein_coding chr11:64940674 chr11:64940678 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_99634 0 0 0 0 1 SPDYC chr11:64940654 3'AG 64940654 Downstream 25bp
chr2 108910805 108910805 1 + C A COAD 108910801 + 108910781 108910821 41 TTGAGTGGGCTCGGCCACCCCAACCTTCTGGTGAGAGCACC TTGAGTGGGCTCGGCCACCCCAACATTCTGGTGAGAGCACC < 41bp 0.47334911759923 0.841695449799237 0.07174051 0.09821761 prediction 0.683390899598473 Functional Gain - SULT1C2 ENSG00000198203 CDS Human protein_coding chr2:108910801 chr2:108910805 nonsynonymous SNV 0.631 1 25 hm5C_associated_SNPs_99635 0 0 0 0 1 SULT1C2 chr2:108910810 5'GT 108910810 Upstream 6bp
chr11 66290971 66290971 1 + C A STAD 66290967 + 66290947 66290987 41 ACTGCATCGAGCTGAGCGCCCAGCCTGTGGGACTTATCCGG ACTGCATCGAGCTGAGCGCCCAGCATGTGGGACTTATCCGG < 41bp 0.46950540741432 0.841571588486975 0.13137218 0.12876555 prediction 0.683143176973951 Functional Gain - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66290967 chr11:66290971 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99638 0 0 1 0 1 BBS1 chr11:66290927 3'AG 66290927 Downstream 45bp
chr6 133783563 133783563 1 + C A LUAD 133783559 + 133783539 133783579 41 GTATTCGGGGATGCAGCAGCCAGCCGTCTACACAGCCTACT GTATTCGGGGATGCAGCAGCCAGCAGTCTACACAGCCTACT < 41bp 0.475967072133287 0.841569772663495 0.30388486 0.3154602 prediction 0.68313954532699 Functional Gain - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133783559 chr6:133783563 synonymous SNV . 0 25 hm5C_associated_SNPs_99639 0 0 0 0 2 EYA4 chr6:133783473 3'AG 133783473 Downstream 91bp
chr6 133783563 133783563 1 + C A LUAD 133783559 + 133783539 133783579 41 GTATTCGGGGATGCAGCAGCCAGCCGTCTACACAGCCTACT GTATTCGGGGATGCAGCAGCCAGCAGTCTACACAGCCTACT < 41bp 0.475967072133287 0.841569772663495 0.30388486 0.3154602 prediction 0.68313954532699 Functional Gain - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133783559 chr6:133783563 synonymous SNV . 0 25 hm5C_associated_SNPs_99639 0 0 0 0 2 EYA4 chr6:133783615 5'GT 133783615 Upstream 53bp
chr17 34313665 34313665 1 - G T COAD 34313669 - 34313649 34313689 41 CAGCATGAAGATCTCCGTGGCTGCCATTCCCTTCTTCCTCC CAGCATGAAGATCTCCGTGGCTGCAATTCCCTTCTTCCTCC < 41bp 0.47154566898958 0.841537682150462 0.059710175 0.14684546 prediction 0.683075364300924 Functional Gain - CCL14 ENSG00000213494;ENSG00000266956 CDS Human other chr17:34313669 chr17:34313665 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_99640 0 0 0 0 2 CCL14 chr17:34313607 5'GT 34313607 Upstream 59bp
chr17 34313665 34313665 1 - G T COAD 34313669 - 34313649 34313689 41 CAGCATGAAGATCTCCGTGGCTGCCATTCCCTTCTTCCTCC CAGCATGAAGATCTCCGTGGCTGCAATTCCCTTCTTCCTCC < 41bp 0.47154566898958 0.841537682150462 0.059710175 0.14684546 prediction 0.683075364300924 Functional Gain - CCL14 ENSG00000213494;ENSG00000266956 CDS Human other chr17:34313669 chr17:34313665 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_99640 0 0 0 0 2 CCL15-CCL14 chr17:34313740 3'AG 34313740 Downstream 76bp
chr12 108604034 108604034 1 + C A LUAD 108604030 + 108604010 108604050 41 GGCAGCGTGTGCGGCGGCGCCAACCGCCTCTCTGTCTACCG GGCAGCGTGTGCGGCGGCGCCAACAGCCTCTCTGTCTACCG < 41bp 0.47173769352213 0.84151846552672 0.30601597 0.43917298 prediction 0.683036931053441 Functional Gain - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108604030 chr12:108604034 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_99641 0 0 0 0 1 WSCD2 chr12:108604082 5'GT 108604082 Upstream 49bp
chr17 16340127 16340127 1 + C A UCEC 16340123 + 16340103 16340143 41 GAACTCTCGAGAACCCTGTCCTGGCTTCCCCTCCCAAGGAG GAACTCTCGAGAACCCTGTCCTGGATTCCCCTCCCAAGGAG < 41bp 0.490104976778994 0.841502956648139 0.18554547 0.27961063 prediction 0.683005913296278 Functional Gain - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16340123 chr17:16340127 nonsynonymous SNV 0.004 2 25 hm5C_associated_SNPs_99643 0 0 1 0 1 TRPV2 chr17:16340103 3'AG 16340103 Downstream 25bp
chr17 32954018 32954018 1 + T G BLCA 32954015 + 32953995 32954035 41 GGGAAGTGCTCAGCATCCTCCTCTATCTGGCCCCCAACTCC GGGAAGTGCTCAGCATCCTCCTCGATCTGGCCCCCAACTCC < 41bp 0.501964586611501 0.843450961027324 0.9301021 0.6771018 prediction 0.682972748831647 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32954015 chr17:32954018 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_99644 0 0 1 0 1 TMEM132E chr17:32954076 5'GT 32954076 Upstream 59bp
chr17 78092544 78092544 1 + C A UCEC 78092540 + 78092520 78092560 41 TGTCCTGGGCGTGGCCACGGCGCCCCAGCAGGTCCTCTCCA TGTCCTGGGCGTGGCCACGGCGCCACAGCAGGTCCTCTCCA < 41bp 0.458753692973149 0.841468195874996 0.6706013 0.84351814 prediction 0.682936391749992 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78092540 chr17:78092544 synonymous SNV . 0 25 hm5C_associated_SNPs_99645 0 0 1 0 1 GAA chr17:78092452 3'AG 78092452 Downstream 93bp
chr17 74382561 74382561 1 + C A LUSC 74382557 + 74382537 74382577 41 CTCCCAGCAGGCTCTGGCAACGCGCTGGCAGCTTCCTTGAA CTCCCAGCAGGCTCTGGCAACGCGATGGCAGCTTCCTTGAA < 41bp 0.527525741823898 0.868932423233635 0.08952063 0.2732793 prediction 0.682813362819474 Functional Gain - SPHK1 ENSG00000176170 CDS Human protein_coding chr17:74382557 chr17:74382561 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_99646 0 0 1 0 2 SPHK1 chr17:74382474 3'AG 74382474 Downstream 88bp
chr17 74382561 74382561 1 + C A LUSC 74382557 + 74382537 74382577 41 CTCCCAGCAGGCTCTGGCAACGCGCTGGCAGCTTCCTTGAA CTCCCAGCAGGCTCTGGCAACGCGATGGCAGCTTCCTTGAA < 41bp 0.527525741823898 0.868932423233635 0.08952063 0.2732793 prediction 0.682813362819474 Functional Gain - SPHK1 ENSG00000176170 CDS Human protein_coding chr17:74382557 chr17:74382561 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_99646 0 0 1 0 2 SPHK1 chr17:74382589 5'GT 74382589 Upstream 29bp
chr18 47107821 47107821 1 + C A GBM 47107817 + 47107797 47107837 41 TGGTAAAATGTGAGCATGAGCGAGCCGTCCACCTCTTTGTT TGGTAAAATGTGAGCATGAGCGAGACGTCCACCTCTTTGTT < 41bp 0.521317743550692 0.862691087031726 0.7656785 0.68313336 prediction 0.682746686962068 Functional Gain - LIPG ENSG00000101670 CDS Human protein_coding chr18:47107817 chr18:47107821 nonsynonymous SNV 0.351 5 25 hm5C_associated_SNPs_99647 0 0 0 0 1 LIPG chr18:47107785 3'AG 47107785 Downstream 37bp
chr9 126128584 126128584 1 + C A COAD 126128580 + 126128560 126128600 41 GGTGCTGGAGTGCGCATCGGCGCCCTGCGAGCACAACGCGT GGTGCTGGAGTGCGCATCGGCGCCATGCGAGCACAACGCGT < 41bp 0.517588124371637 0.858935151532836 0.3524158 0.34157443 prediction 0.682694054322399 Functional Gain - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126128580 chr9:126128584 synonymous SNV . 0 25 hm5C_associated_SNPs_99648 0 0 0 0 2 CRB2 chr9:126128506 3'AG 126128506 Downstream 79bp
chr9 126128584 126128584 1 + C A COAD 126128580 + 126128560 126128600 41 GGTGCTGGAGTGCGCATCGGCGCCCTGCGAGCACAACGCGT GGTGCTGGAGTGCGCATCGGCGCCATGCGAGCACAACGCGT < 41bp 0.517588124371637 0.858935151532836 0.3524158 0.34157443 prediction 0.682694054322399 Functional Gain - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126128580 chr9:126128584 synonymous SNV . 0 25 hm5C_associated_SNPs_99648 0 0 0 0 2 CRB2 chr9:126128645 5'GT 126128645 Upstream 62bp
chr12 119968845 119968845 1 + C A SARC 119968841 + 119968821 119968861 41 CTGAGGATTTGGGAACTGTGCTCCCCTGACATCGCTGTGGC CTGAGGATTTGGGAACTGTGCTCCACTGACATCGCTGTGGC < 41bp 0.450069820435182 0.841314455645072 0.29827672 0.71249187 prediction 0.682628911290144 Functional Gain - CCDC60 ENSG00000183273 CDS Human protein_coding chr12:119968841 chr12:119968845 nonsynonymous SNV 0.760 4 25 hm5C_associated_SNPs_99649 0 0 0 0 1 CCDC60 chr12:119968868 5'GT 119968868 Upstream 24bp
chr17 72366781 72366781 1 + C A UCEC 72366777 + 72366757 72366797 41 GTGTGTGGCTGGCGTCATCCCTGTCATCTACTACAGTGTCC GTGTGTGGCTGGCGTCATCCCTGTAATCTACTACAGTGTCC < 41bp 0.463931731699346 0.841201744715821 0.18155134 0.5826387 prediction 0.682403489431642 Functional Gain - GPR142 ENSG00000257008 CDS Human protein_coding chr17:72366777 chr17:72366781 synonymous SNV . 0 25 hm5C_associated_SNPs_99653 0 0 0 0 1 GPR142 chr17:72366818 5'GT 72366818 Upstream 38bp
chrX 48545194 48545194 1 + T G GBM 48545191 + 48545171 48545211 41 CCCTCCAGTGGGTCCGCTCTCCCTGGGGCTGGCGACAGTGG CCCTCCAGTGGGTCCGCTCTCCCGGGGGCTGGCGACAGTGG < 41bp 0.478959737475459 0.841144456111482 0.12025702 0.9303484 prediction 0.682288912222964 Functional Gain - WAS ENSG00000015285 CDS Human protein_coding chrX:48545191 chrX:48545194 nonsynonymous SNV 0.623 3 24 hm5C_associated_SNPs_99655 0 0 1 0 1 WAS chrX:48545170 3'AG 48545170 Downstream 25bp
chr10 12131081 12131081 1 + T G rs3740015 12131078 + 12131058 12131098 41 ACCTGACCTCCTCTGTGGACCTGTACTTTGGGGCGCACCAT ACCTGACCTCCTCTGTGGACCTGGACTTTGGGGCGCACCAT < 41bp 0.48267598297003 0.841138229290382 0.6682426 0.90452653 prediction 0.682276458580765 Functional Gain - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12131078 chr10:12131081 nonsynonymous SNV 0.934 0 24 hm5C_associated_SNPs_99656 0 0 1 0 1 DHTKD1 chr10:12130985 3'AG 12130985 Downstream 97bp
chr10 103912207 103912207 1 + C A OV 103912203 + 103912183 103912223 41 ATTCGCCGCGTGGTTCCCAGCGACCTGTATCCCCTCGTGCT ATTCGCCGCGTGGTTCCCAGCGACATGTATCCCCTCGTGCT < 41bp 0.490429725153082 0.840916452878446 0.10713163 0.24240214 prediction 0.681832905756891 Functional Gain - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103912203 chr10:103912207 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_99659 0 0 1 0 1 NOLC1 chr10:103912287 5'GT 103912287 Upstream 81bp
chr22 39387497 39387497 1 + C A rs149274572 39387493 + 39387473 39387513 41 GGGGCTGTGCCGGGGAAGTGCGTGCGTTCCTTCAGGAGAAC GGGGCTGTGCCGGGGAAGTGCGTGAGTTCCTTCAGGAGAAC < 41bp 0.513904214311154 0.854810430174102 0.5017984 0.56574166 prediction 0.681812431725894 Functional Gain - APOBEC3B ENSG00000179750 CDS Human protein_coding chr22:39387493 chr22:39387497 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_99661 0 0 0 0 1 APOBEC3B chr22:39387412 3'AG 39387412 Downstream 86bp
chr3 112064051 112064051 1 + C A LUAD 112064047 + 112064027 112064067 41 ACCATCACCTTCTGGAATATCACCCTGGAGGATGAAGGGTG ACCATCACCTTCTGGAATATCACCATGGAGGATGAAGGGTG < 41bp 0.547472105499417 0.888347514656226 0.03257519 0.24237755 prediction 0.681750818313618 Functional Gain - CD200 ENSG00000091972 CDS Human protein_coding chr3:112064047 chr3:112064051 nonsynonymous SNV 0.808 0 25 hm5C_associated_SNPs_99662 0 0 0 0 1 CD200 chr3:112064135 5'GT 112064135 Upstream 85bp
chr1 43778257 43778257 1 + C A BLCA 43778253 + 43778233 43778273 41 CCGGCCTCGCCCCCTGCACACGTGCTTCTGCCCCCCAGTGG CCGGCCTCGCCCCCTGCACACGTGATTCTGCCCCCCAGTGG < 41bp 0.493847981903771 0.840806062287424 0.39584392 0.6258922 prediction 0.681612124574848 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43778253 chr1:43778257 nonsynonymous SNV 0.276 0 25 hm5C_associated_SNPs_99665 0 0 0 0 1 TIE1 chr1:43778272 5'GT 43778272 Upstream 16bp
chr19 42265959 42265959 1 + C A COAD 42265955 + 42265935 42265975 41 TCTGAACCTCTCCTGCCACGCAGCCTCTAACCCACCTGCAC TCTGAACCTCTCCTGCCACGCAGCATCTAACCCACCTGCAC < 41bp 0.479001767905164 0.840786465845371 0.20962355 0.31553084 prediction 0.681572931690741 Functional Gain - CEACAM6 ENSG00000086548 CDS Human protein_coding chr19:42265955 chr19:42265959 synonymous SNV . 0 25 hm5C_associated_SNPs_99667 0 0 0 0 1 CEACAM6 chr19:42265877 3'AG 42265877 Downstream 83bp
chr3 46944036 46944036 1 + T G COAD 46944033 + 46944013 46944053 41 CAGGAAGCTGCTCAAATCCACGCTGGTGCTCATGCCCCTCT CAGGAAGCTGCTCAAATCCACGCGGGTGCTCATGCCCCTCT < 41bp 0.514640183635048 0.855401436948929 0.24568337 0.87316453 prediction 0.681522506627762 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46944033 chr3:46944036 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_99669 0 0 0 0 1 PTH1R chr3:46944016 3'AG 46944016 Downstream 21bp
chr6 109274546 109274546 1 + C A LUSC 109274542 + 109274522 109274562 41 CGGGGATAGTGGGCCTGCTCCTGACCACGCTGGGTGAGAAC CGGGGATAGTGGGCCTGCTCCTGAACACGCTGGGTGAGAAC < 41bp 0.525537712103888 0.866246687656815 0.61532474 0.78787106 prediction 0.681417951105856 Functional Gain - ARMC2 ENSG00000118690 CDS Human protein_coding chr6:109274542 chr6:109274546 nonsynonymous SNV 0.520 0 25 hm5C_associated_SNPs_99670 0 0 0 0 1 ARMC2 chr6:109274554 5'GT 109274554 Upstream 9bp
chr16 31341460 31341460 1 + C A BLCA 31341456 + 31341436 31341476 41 TGCCCTCTCACTCCGACTTTCTGGCTGAGCTTCGGAAGGCC TGCCCTCTCACTCCGACTTTCTGGATGAGCTTCGGAAGGCC < 41bp 0.465529886153245 0.840703163877662 0.29977795 0.59465516 prediction 0.681406327755325 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31341456 chr16:31341460 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_99671 0 0 0 0 2 ITGAM chr16:31341402 3'AG 31341402 Downstream 59bp
chr16 31341460 31341460 1 + C A BLCA 31341456 + 31341436 31341476 41 TGCCCTCTCACTCCGACTTTCTGGCTGAGCTTCGGAAGGCC TGCCCTCTCACTCCGACTTTCTGGATGAGCTTCGGAAGGCC < 41bp 0.465529886153245 0.840703163877662 0.29977795 0.59465516 prediction 0.681406327755325 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31341456 chr16:31341460 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_99671 0 0 0 0 2 ITGAM chr16:31341485 5'GT 31341485 Upstream 26bp
chrX 77378707 77378707 1 + T G UCEC 77378704 + 77378684 77378724 41 CTGTGTAGATTGGCACTTCTCTGTTTGATGAAGAGGGAGCC CTGTGTAGATTGGCACTTCTCTGGTTGATGAAGAGGGAGCC < 41bp 0.495045530479647 0.840656891752374 0.03525114 0.1283746 prediction 0.681313783504748 Functional Gain - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378704 chrX:77378707 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_99673 0 0 1 2 1 PGK1 chrX:77378692 3'AG 77378692 Downstream 16bp
chr14 23848306 23848306 1 + C A STAD 23848302 + 23848282 23848322 41 GTCTCCTTTGCAGCTGTGACCTCCCGGGACGGAGCTGCCAT GTCTCCTTTGCAGCTGTGACCTCCAGGGACGGAGCTGCCAT < 41bp 0.543216675300531 0.883861767597302 0.06344971 0.94692516 prediction 0.681290184593541 Functional Gain - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23848302 chr14:23848306 synonymous SNV . 0 25 hm5C_associated_SNPs_99674 0 0 0 0 2 CMTM5 chr14:23848240 3'AG 23848240 Downstream 67bp
chr14 23848306 23848306 1 + C A STAD 23848302 + 23848282 23848322 41 GTCTCCTTTGCAGCTGTGACCTCCCGGGACGGAGCTGCCAT GTCTCCTTTGCAGCTGTGACCTCCAGGGACGGAGCTGCCAT < 41bp 0.543216675300531 0.883861767597302 0.06344971 0.94692516 prediction 0.681290184593541 Functional Gain - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23848302 chr14:23848306 synonymous SNV . 0 25 hm5C_associated_SNPs_99674 0 0 0 0 2 CMTM5 chr14:23848332 5'GT 23848332 Upstream 27bp
chr17 34062334 34062334 1 + C A rs139238337 34062330 + 34062310 34062350 41 CCACCGCCCGCCGCCTTTACCTGCCTGCTGTCGTCATGAAC CCACCGCCCGCCGCCTTTACCTGCATGCTGTCGTCATGAAC < 41bp 0.461690136912404 0.840622563387799 0.33789378 0.42848545 prediction 0.681245126775597 Functional Gain - RASL10B ENSG00000141150 CDS Human other chr17:34062330 chr17:34062334 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99676 0 0 0 0 1 RASL10B chr17:34062419 5'GT 34062419 Upstream 86bp
chr10 73115972 73115972 1 + C A LGG 73115968 + 73115948 73115988 41 CTCGTGCTCTGCATGGGACTCTACCTGCTGCTGTCCAGGCT CTCGTGCTCTGCATGGGACTCTACATGCTGCTGTCCAGGCT < 41bp 0.446342099563013 0.840619887405544 0.35101554 0.92844653 prediction 0.681239774811087 Functional Gain - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73115968 chr10:73115972 nonsynonymous SNV 0.622 3 25 hm5C_associated_SNPs_99677 0 0 0 0 2 SLC29A3 chr10:73116000 5'GT 73116000 Upstream 29bp
chr10 73115972 73115972 1 + C A LGG 73115968 + 73115948 73115988 41 CTCGTGCTCTGCATGGGACTCTACCTGCTGCTGTCCAGGCT CTCGTGCTCTGCATGGGACTCTACATGCTGCTGTCCAGGCT < 41bp 0.446342099563013 0.840619887405544 0.35101554 0.92844653 prediction 0.681239774811087 Functional Gain - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73115968 chr10:73115972 nonsynonymous SNV 0.622 3 25 hm5C_associated_SNPs_99677 0 0 0 0 2 SLC29A3 chr10:73116006 5'GT 73116006 Upstream 35bp
chr20 43561020 43561020 1 + T G rs556015963 43561017 + 43560997 43561037 41 TGCATACTATGGCTGTGGCCCAGTGACACCCACCCAGCCTG TGCATACTATGGCTGTGGCCCAGGGACACCCACCCAGCCTG < 41bp 0.479357788356341 0.840573899620763 0.35129267 0.9328369 prediction 0.681147799241525 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43561017 chr20:43561020 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_99680 0 0 1 0 2 PABPC1L chr20:43560983 3'AG 43560983 Downstream 38bp
chr20 43561020 43561020 1 + T G rs556015963 43561017 + 43560997 43561037 41 TGCATACTATGGCTGTGGCCCAGTGACACCCACCCAGCCTG TGCATACTATGGCTGTGGCCCAGGGACACCCACCCAGCCTG < 41bp 0.479357788356341 0.840573899620763 0.35129267 0.9328369 prediction 0.681147799241525 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43561017 chr20:43561020 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_99680 0 0 1 0 2 PABPC1L chr20:43561073 5'GT 43561073 Upstream 54bp
chr10 45869784 45869784 1 + C A KIRP 45869780 + 45869760 45869800 41 CAGCCAGTGGTTCGCCGGCACTGACGACTACATCTACCTCA CAGCCAGTGGTTCGCCGGCACTGAAGACTACATCTACCTCA < 41bp 0.486717156722601 0.84055984516019 0.009233147 0.027876109 prediction 0.68111969032038 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45869780 chr10:45869784 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_99681 0 0 0 0 1 ALOX5 chr10:45869877 5'GT 45869877 Upstream 94bp
chr9 33240248 33240248 1 + C A STAD 33240244 + 33240224 33240264 41 GGTAATCGCCCTGGCCTTGGCTGCCCTCCTTGTTGTGGACA GGTAATCGCCCTGGCCTTGGCTGCACTCCTTGTTGTGGACA < 41bp 0.478669719969571 0.840555203502328 0.08380887 0.15257934 prediction 0.681110407004657 Functional Gain - SPINK4 ENSG00000122711 CDS Human protein_coding chr9:33240244 chr9:33240248 synonymous SNV . 0 25 hm5C_associated_SNPs_99682 0 0 0 0 1 SPINK4 chr9:33240267 5'GT 33240267 Upstream 20bp
chr19 51361810 51361810 1 + C A UCEC 51361806 + 51361786 51361826 41 CCTCAGAAGGTGACCAAGTTCATGCTGTGTGCTGGACGCTG CCTCAGAAGGTGACCAAGTTCATGATGTGTGCTGGACGCTG < 41bp 0.526691119143106 0.867226145729614 0.25791287 0.2893906 prediction 0.681070053173016 Functional Gain - KLK3 ENSG00000142515 CDS Human protein_coding chr19:51361806 chr19:51361810 nonsynonymous SNV 0.075 3 25 hm5C_associated_SNPs_99684 0 0 0 0 2 KLK3 chr19:51361715 3'AG 51361715 Downstream 96bp
chr19 51361810 51361810 1 + C A UCEC 51361806 + 51361786 51361826 41 CCTCAGAAGGTGACCAAGTTCATGCTGTGTGCTGGACGCTG CCTCAGAAGGTGACCAAGTTCATGATGTGTGCTGGACGCTG < 41bp 0.526691119143106 0.867226145729614 0.25791287 0.2893906 prediction 0.681070053173016 Functional Gain - KLK3 ENSG00000142515 CDS Human protein_coding chr19:51361806 chr19:51361810 nonsynonymous SNV 0.075 3 25 hm5C_associated_SNPs_99684 0 0 0 0 2 KLK3 chr19:51361851 5'GT 51361851 Upstream 42bp
chr20 30617623 30617623 1 + C A LGG 30617619 + 30617599 30617639 41 CTGCTGAAGCTCTACGGAGACCGGCGCAAGTTCCTCCTCCT CTGCTGAAGCTCTACGGAGACCGGAGCAAGTTCCTCCTCCT < 41bp 0.486904706648931 0.840430135669612 0.7351075 0.8375608 prediction 0.680860271339224 Functional Gain - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30617619 chr20:30617623 nonsynonymous SNV 0.990 4 25 hm5C_associated_SNPs_99687 0 0 0 0 1 CCM2L chr20:30617641 5'GT 30617641 Upstream 19bp
chr1 156848968 156848968 1 + C A rs6338 156848964 + 156848944 156848984 41 TGGTGGGGAGGATGTGGCTCCAGGCCCCCTGGGTCTGGGGC TGGTGGGGAGGATGTGGCTCCAGGACCCCTGGGTCTGGGGC < 41bp 0.51113973794715 0.851414444558399 0.9287549 0.9245583 prediction 0.680549413222497 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156848964 chr1:156848968 synonymous SNV . 0 25 hm5C_associated_SNPs_99692 0 0 0 0 1 NTRK1 chr1:156848914 3'AG 156848914 Downstream 55bp
chrX 13618152 13618152 1 + C A LUSC 13618148 + 13618128 13618168 41 CCAACACAGATGTGTGAATACACACGGAAGCTACAAGTGCT CCAACACAGATGTGTGAATACACAAGGAAGCTACAAGTGCT < 41bp 0.463134192375082 0.840136661531303 0.0441975 0.09156293 prediction 0.680273323062607 Functional Gain - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13618148 chrX:13618152 nonsynonymous SNV 0.770 5 25 hm5C_associated_SNPs_99696 0 0 0 0 2 EGFL6 chrX:13618094 3'AG 13618094 Downstream 59bp
chrX 13618152 13618152 1 + C A LUSC 13618148 + 13618128 13618168 41 CCAACACAGATGTGTGAATACACACGGAAGCTACAAGTGCT CCAACACAGATGTGTGAATACACAAGGAAGCTACAAGTGCT < 41bp 0.463134192375082 0.840136661531303 0.0441975 0.09156293 prediction 0.680273323062607 Functional Gain - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13618148 chrX:13618152 nonsynonymous SNV 0.770 5 25 hm5C_associated_SNPs_99696 0 0 0 0 2 EGFL6 chrX:13618213 5'GT 13618213 Upstream 62bp
chr6 46623671 46623671 1 + C A PRAD 46623667 + 46623647 46623687 41 GGGAGACGGTGCAAGAGAATCTGCCCCCTATAGGGGAATGG GGGAGACGGTGCAAGAGAATCTGCACCCTATAGGGGAATGG < 41bp 0.514828292881219 0.854909231592261 0.22385791 0.31326708 prediction 0.680161877422083 Functional Gain - SLC25A27 ENSG00000153291 CDS Human protein_coding chr6:46623667 chr6:46623671 synonymous SNV . 0 25 hm5C_associated_SNPs_99698 0 0 1 0 2 SLC25A27 chr6:46623580 3'AG 46623580 Downstream 92bp
chr6 46623671 46623671 1 + C A PRAD 46623667 + 46623647 46623687 41 GGGAGACGGTGCAAGAGAATCTGCCCCCTATAGGGGAATGG GGGAGACGGTGCAAGAGAATCTGCACCCTATAGGGGAATGG < 41bp 0.514828292881219 0.854909231592261 0.22385791 0.31326708 prediction 0.680161877422083 Functional Gain - SLC25A27 ENSG00000153291 CDS Human protein_coding chr6:46623667 chr6:46623671 synonymous SNV . 0 25 hm5C_associated_SNPs_99698 0 0 1 0 2 SLC25A27 chr6:46623767 5'GT 46623767 Upstream 97bp
chr6 348194 348194 1 + C A LUAD 348190 + 348170 348210 41 TGGGAGGATGCCCTGCACACCGTGCGTGCTGGGAGATCCTG TGGGAGGATGCCCTGCACACCGTGAGTGCTGGGAGATCCTG < 41bp 0.5247916460045 0.864864100582752 0.07505882 0.11775613 prediction 0.680144909156505 Functional Gain - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348190 chr6:348194 stopgain 0.839 4 25 hm5C_associated_SNPs_99700 0 0 0 0 2 DUSP22 chr6:348103 3'AG 348103 Downstream 92bp
chr6 348194 348194 1 + C A LUAD 348190 + 348170 348210 41 TGGGAGGATGCCCTGCACACCGTGCGTGCTGGGAGATCCTG TGGGAGGATGCCCTGCACACCGTGAGTGCTGGGAGATCCTG < 41bp 0.5247916460045 0.864864100582752 0.07505882 0.11775613 prediction 0.680144909156505 Functional Gain - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348190 chr6:348194 stopgain 0.839 4 25 hm5C_associated_SNPs_99700 0 0 0 0 2 DUSP22 chr6:348274 5'GT 348274 Upstream 81bp
chr17 4496465 4496465 1 + C A rs368707338 4496461 + 4496441 4496481 41 CACGCCCTGGACTCCCAGTCCTAGCGGTATGAGCTGGAGAG CACGCCCTGGACTCCCAGTCCTAGAGGTATGAGCTGGAGAG < 41bp 0.470372198565891 0.839985060074883 0.09764707 0.36593646 prediction 0.679970120149767 Functional Gain - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4496461 chr17:4496465 nonsynonymous SNV 0.018 2 25 hm5C_associated_SNPs_99703 0 0 0 0 1 SMTNL2 chr17:4496466 5'GT 4496466 Upstream 2bp
chr17 7950034 7950034 1 + C A rs61730345 7950030 + 7950010 7950050 41 ACCCTGCACATCAACACACTCGCCCGGGAGCTGCTTATCGT ACCCTGCACATCAACACACTCGCCAGGGAGCTGCTTATCGT < 41bp 0.449772874686504 0.839935468557038 0.06250015 0.2617572 prediction 0.679870937114077 Functional Gain - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7950030 chr17:7950034 synonymous SNV . 0 25 hm5C_associated_SNPs_99705 0 0 0 0 1 ALOX15B chr17:7949986 3'AG 7949986 Downstream 49bp
chr12 6883843 6883843 1 + C A UCEC 6883839 + 6883819 6883859 41 CTTCAGCCGCCCTGACCGCCCAGCCTCTGTGCATTGGTTCC CTTCAGCCGCCCTGACCGCCCAGCATCTGTGCATTGGTTCC < 41bp 0.463787403994781 0.839922954349992 0.06784701 0.12054145 prediction 0.679845908699985 Functional Gain - LAG3 ENSG00000089692 CDS Human protein_coding chr12:6883839 chr12:6883843 synonymous SNV . 0 25 hm5C_associated_SNPs_99708 0 0 0 0 1 LAG3 chr12:6883761 3'AG 6883761 Downstream 83bp
chr2 102626246 102626246 1 + C A SKCM 102626242 + 102626222 102626262 41 AGGACGGTGCTCTGTGGCTTCTGCCAGCCTTGCAGGAGGAC AGGACGGTGCTCTGTGGCTTCTGCAAGCCTTGCAGGAGGAC < 41bp 0.445832596787303 0.839880419605907 0.16369304 0.24047482 prediction 0.679760839211814 Functional Gain - IL1R2 ENSG00000115590 CDS Human protein_coding chr2:102626242 chr2:102626246 nonsynonymous SNV 0.090 2 25 hm5C_associated_SNPs_99709 0 0 0 0 2 IL1R2 chr2:102626184 3'AG 102626184 Downstream 63bp
chr2 102626246 102626246 1 + C A SKCM 102626242 + 102626222 102626262 41 AGGACGGTGCTCTGTGGCTTCTGCCAGCCTTGCAGGAGGAC AGGACGGTGCTCTGTGGCTTCTGCAAGCCTTGCAGGAGGAC < 41bp 0.445832596787303 0.839880419605907 0.16369304 0.24047482 prediction 0.679760839211814 Functional Gain - IL1R2 ENSG00000115590 CDS Human protein_coding chr2:102626242 chr2:102626246 nonsynonymous SNV 0.090 2 25 hm5C_associated_SNPs_99709 0 0 0 0 2 IL1R2 chr2:102626288 5'GT 102626288 Upstream 43bp
chr1 180897675 180897675 1 + C A LUAD 180897671 + 180897651 180897691 41 AGGACCCGGCCCCTCCGTGCCAGCCATGACATCGTGCCCAC AGGACCCGGCCCCTCCGTGCCAGCAATGACATCGTGCCCAC < 41bp 0.541228598385079 0.881050503468862 0.115546554 0.07273167 prediction 0.679643810167567 Functional Gain - KIAA1614 ENSG00000135835 CDS Human protein_coding chr1:180897671 chr1:180897675 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99710 0 0 0 0 1 KIAA1614 chr1:180897709 5'GT 180897709 Upstream 35bp
chr12 107080755 107080755 1 + C A LUSC 107080751 + 107080731 107080771 41 AGCTGCCTGGGTGAGTGAGACGGGCAAGAAAGAAGTGAGCA AGCTGCCTGGGTGAGTGAGACGGGAAAGAAAGAAGTGAGCA < 41bp 0.533822146025667 0.873564527693214 0.8584131 0.7621964 prediction 0.679484763335094 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107080751 chr12:107080755 synonymous SNV . 0 25 hm5C_associated_SNPs_99715 0 0 0 0 1 RFX4 chr12:107080662 3'AG 107080662 Downstream 94bp
chr16 336905 336905 1 + C A STAD 336901 + 336881 336921 41 TCCTGGACAACGGGGGCGTGCTGCCCACGGAGGAGCCCCCG TCCTGGACAACGGGGGCGTGCTGCACACGGAGGAGCCCCCG < 41bp 0.536307595121331 0.876026426802396 0.6457437 0.74246264 prediction 0.67943766336213 Functional Gain - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:336901 chr16:336905 nonsynonymous SNV 0.008 3 25 hm5C_associated_SNPs_99717 0 0 0 0 2 PDIA2 chr16:336835 3'AG 336835 Downstream 71bp
chr16 336905 336905 1 + C A STAD 336901 + 336881 336921 41 TCCTGGACAACGGGGGCGTGCTGCCCACGGAGGAGCCCCCG TCCTGGACAACGGGGGCGTGCTGCACACGGAGGAGCCCCCG < 41bp 0.536307595121331 0.876026426802396 0.6457437 0.74246264 prediction 0.67943766336213 Functional Gain - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:336901 chr16:336905 nonsynonymous SNV 0.008 3 25 hm5C_associated_SNPs_99717 0 0 0 0 2 PDIA2 chr16:336945 5'GT 336945 Upstream 41bp
chr9 36118810 36118810 1 + T G STAD 36118807 + 36118787 36118827 41 CACAATGGTGAGACCTACAGCAGTGTGTGTGCTGCCTACTC CACAATGGTGAGACCTACAGCAGGGTGTGTGCTGCCTACTC < 41bp 0.515159678655812 0.854849843790425 0.86634475 0.9068415 prediction 0.679380330269227 Functional Gain - RECK ENSG00000122707 CDS Human protein_coding chr9:36118807 chr9:36118810 nonsynonymous SNV 0.970 2 24 hm5C_associated_SNPs_99718 0 0 0 0 1 RECK chr9:36118754 3'AG 36118754 Downstream 57bp
chr22 31667167 31667167 1 + C A PRAD 31667163 + 31667143 31667183 41 ATCATCCACCGGGATCTGAACTCGCACAACTGCCTCATCAA ATCATCCACCGGGATCTGAACTCGAACAACTGCCTCATCAA < 41bp 0.438406790809898 0.839674884491421 0.6494405 0.8835846 prediction 0.679349768982841 Functional Gain - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31667163 chr22:31667167 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99719 0 0 1 0 2 LIMK2 chr22:31667122 3'AG 31667122 Downstream 46bp
chr22 31667167 31667167 1 + C A PRAD 31667163 + 31667143 31667183 41 ATCATCCACCGGGATCTGAACTCGCACAACTGCCTCATCAA ATCATCCACCGGGATCTGAACTCGAACAACTGCCTCATCAA < 41bp 0.438406790809898 0.839674884491421 0.6494405 0.8835846 prediction 0.679349768982841 Functional Gain - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31667163 chr22:31667167 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99719 0 0 1 0 2 LIMK2 chr22:31667187 5'GT 31667187 Upstream 21bp
chr12 1937354 1937354 1 + C A rs190717324 1937350 + 1937330 1937370 41 AGCAGCCCTGGGCAGAGGGGCAGGCTCGCCCTGCAGTGGAG AGCAGCCCTGGGCAGAGGGGCAGGATCGCCCTGCAGTGGAG < 41bp 0.501606963555449 0.841216385208388 0.8740859 0.8853781 prediction 0.679218843305878 Functional Gain - LRTM2 ENSG00000166159 CDS Human protein_coding chr12:1937350 chr12:1937354 nonsynonymous SNV 0.980 0 25 hm5C_associated_SNPs_99722 0 0 0 0 1 LRTM2 chr12:1937381 5'GT 1937381 Upstream 28bp
chr22 39355689 39355689 1 + C A LUAD 39355685 + 39355665 39355705 41 CAGCACAGGGGCTTTCTACACAACCAGGTGACCGACCCAGC CAGCACAGGGGCTTTCTACACAACAAGGTGACCGACCCAGC < 41bp 0.527647604864714 0.867248042761279 0.0054090023 0.0207434 prediction 0.67920087579313 Functional Gain - APOBEC3A;APOBEC3A_B ENSG00000128383 CDS Human protein_coding chr22:39355685 chr22:39355689 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_99723 0 0 0 0 2 APOBEC3A;APOBEC3A_B chr22:39355601 3'AG 39355601 Downstream 89bp
chr22 39355689 39355689 1 + C A LUAD 39355685 + 39355665 39355705 41 CAGCACAGGGGCTTTCTACACAACCAGGTGACCGACCCAGC CAGCACAGGGGCTTTCTACACAACAAGGTGACCGACCCAGC < 41bp 0.527647604864714 0.867248042761279 0.0054090023 0.0207434 prediction 0.67920087579313 Functional Gain - APOBEC3A;APOBEC3A_B ENSG00000128383 CDS Human protein_coding chr22:39355685 chr22:39355689 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_99723 0 0 0 0 2 APOBEC3A;APOBEC3A_B chr22:39355691 5'GT 39355691 Upstream 3bp
chr1 192627481 192627481 1 + C A LUAD 192627477 + 192627457 192627497 41 AGCTTTATAAGATTTACATCCAGCCACAGTCCCCTAGAGAG AGCTTTATAAGATTTACATCCAGCAACAGTCCCCTAGAGAG < 41bp 0.523756505581467 0.863324716144906 0.42642236 0.2898419 prediction 0.679136421126878 Functional Gain - RGS13 ENSG00000127074 CDS Human protein_coding chr1:192627477 chr1:192627481 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_99725 0 0 0 0 1 RGS13 chr1:192627497 5'GT 192627497 Upstream 17bp
chr17 48174888 48174888 1 + C A rs35550088 48174884 + 48174864 48174904 41 AAAGAGATCAACCTGCTTCCCGACCGAGTGCTGAGCACACC AAAGAGATCAACCTGCTTCCCGACAGAGTGCTGAGCACACC < 41bp 0.533068555052807 0.872636279315719 0.10282099 0.041104496 prediction 0.679135448525824 Functional Gain - PDK2 ENSG00000005882 CDS Human protein_coding chr17:48174884 chr17:48174888 synonymous SNV . 0 25 hm5C_associated_SNPs_99726 0 0 1 0 1 PDK2 chr17:48174928 5'GT 48174928 Upstream 41bp
chr1 22924351 22924351 1 + C A THCA 22924347 + 22924327 22924367 41 ATCCGCCTCGAGGGTGTCGTCACCCGTGGTAGGTGCCGGGC ATCCGCCTCGAGGGTGTCGTCACCAGTGGTAGGTGCCGGGC < 41bp 0.540481719917632 0.879947797491185 0.2469753 0.2632928 prediction 0.678932155147105 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22924347 chr1:22924351 nonsynonymous SNV 0.906 3 25 hm5C_associated_SNPs_99729 0 0 0 0 1 EPHA8 chr1:22924354 5'GT 22924354 Upstream 4bp
chr12 7054995 7054995 1 + C A COAD 7054991 + 7054971 7055011 41 AGCCCAGGATCCTGAGATCGCCAGCCTGTCAGGCAAGCTGA AGCCCAGGATCCTGAGATCGCCAGACTGTCAGGCAAGCTGA < 41bp 0.499720815238846 0.839446557968678 0.55235463 0.89382654 prediction 0.678893115937355 Functional Gain - C12orf57 ENSG00000111678 CDS Human protein_coding chr12:7054991 chr12:7054995 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_99731 0 0 1 0 1 C12orf57 chr12:7054934 3'AG 7054934 Downstream 62bp
chr1 117307156 117307156 1 + C A rs375969497 117307152 + 117307132 117307172 41 ATTGGCATATGTGGAGGAGGCAGCCTCTTGATGGTCTTTGT ATTGGCATATGTGGAGGAGGCAGCATCTTGATGGTCTTTGT < 41bp 0.508571680405218 0.847959903337029 0.5019795 0.64023393 prediction 0.678776445863621 Functional Gain - CD2 ENSG00000116824 CDS Human protein_coding chr1:117307152 chr1:117307156 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_99733 0 0 0 0 2 CD2 chr1:117307106 3'AG 117307106 Downstream 51bp
chr1 117307156 117307156 1 + C A rs375969497 117307152 + 117307132 117307172 41 ATTGGCATATGTGGAGGAGGCAGCCTCTTGATGGTCTTTGT ATTGGCATATGTGGAGGAGGCAGCATCTTGATGGTCTTTGT < 41bp 0.508571680405218 0.847959903337029 0.5019795 0.64023393 prediction 0.678776445863621 Functional Gain - CD2 ENSG00000116824 CDS Human protein_coding chr1:117307152 chr1:117307156 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_99733 0 0 0 0 2 CD2 chr1:117307228 5'GT 117307228 Upstream 73bp
chr22 46684356 46684356 1 + C A UCEC 46684352 + 46684332 46684372 41 GCCAGCGGTGGCAGGATGTCCTGCCTGTGGCCCGGAAGCAC GCCAGCGGTGGCAGGATGTCCTGCATGTGGCCCGGAAGCAC < 41bp 0.545622747849338 0.885000188486699 0.23354998 0.19153881 prediction 0.678754881274723 Functional Gain - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46684352 chr22:46684356 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_99734 0 0 0 0 1 TTC38 chr22:46684320 3'AG 46684320 Downstream 37bp
chr10 29578094 29578094 1 + T G UCEC 29578091 + 29578071 29578111 41 CTGTCACCGACTAAGTGGAGCAGTGTTTCTTCCGCAGACTC CTGTCACCGACTAAGTGGAGCAGGGTTTCTTCCGCAGACTC < 41bp 0.520742068008984 0.860036932096959 0.3337415 0.91794276 prediction 0.678589728175949 Functional Gain - LYZL1 ENSG00000120563 CDS Human protein_coding chr10:29578091 chr10:29578094 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_99735 0 0 0 0 1 LYZL1 chr10:29578159 5'GT 29578159 Upstream 66bp
chr11 46403911 46403911 1 + C A BLCA 46403907 + 46403887 46403927 41 GGCCTGGGGGCCCTGCACCCCCAGCAGCAAGGATTGCGGCG GGCCTGGGGGCCCTGCACCCCCAGAAGCAAGGATTGCGGCG < 41bp 0.50100590981387 0.840234098956917 0.13660428 0.117753625 prediction 0.678456378286094 Functional Gain - MDK ENSG00000110492 CDS Human protein_coding chr11:46403907 chr11:46403911 nonsynonymous SNV 0.994 2 25 hm5C_associated_SNPs_99738 0 0 1 0 1 MDK chr11:46403844 3'AG 46403844 Downstream 68bp
chr22 44967365 44967365 1 + C A UCEC 44967361 + 44967341 44967381 41 GGGACGTCCTGTCAGCAGAGCAGGCTGGACTGGTGAGTTTC GGGACGTCCTGTCAGCAGAGCAGGATGGACTGGTGAGTTTC < 41bp 0.491182012583502 0.839151860403055 0.8945168 0.90415 prediction 0.67830372080611 Functional Gain - LINC00207 ENSG00000187012 ncRNA_exonic Human lincRNA chr22:44967361 chr22:44967365 . . 0 25 hm5C_associated_SNPs_99741 0 0 0 0 1 LINC00207 chr22:44967372 5'GT 44967372 Upstream 8bp
chr1 3669280 3669280 1 + C A rs202157664 3669276 + 3669256 3669296 41 CAGAGCATGGCCAGCCGGGACGCCCGGTGCCCAGAATGGAA CAGAGCATGGCCAGCCGGGACGCCAGGTGCCCAGAATGGAA < 41bp 0.514768646492132 0.853861343652226 0.331002 0.73948324 prediction 0.678185394320188 Functional Gain - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3669276 chr1:3669280 synonymous SNV . 0 25 hm5C_associated_SNPs_99744 0 0 0 0 1 CCDC27 chr1:3669363 5'GT 3669363 Upstream 84bp
chr1 10535052 10535052 1 + C A rs12068754 10535048 + 10535028 10535068 41 CGTCCTCGGAGCAGGCAGAGCAGCCGAGCCAGGTAAGGGGA CGTCCTCGGAGCAGGCAGAGCAGCAGAGCCAGGTAAGGGGA < 41bp 0.513752501581113 0.852820332247131 0.8998524 0.90415615 prediction 0.678135661332036 Functional Gain - PEX14 ENSG00000142655 CDS Human protein_coding chr1:10535048 chr1:10535052 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99745 0 0 1 1 1 PEX14 chr1:10535059 5'GT 10535059 Upstream 8bp
chr20 31604886 31604886 1 + T G SKCM 31604883 + 31604863 31604903 41 TCCAACCTGGTGCAGGGTGTCAATGTCCACCTGGGCACCTT TCCAACCTGGTGCAGGGTGTCAAGGTCCACCTGGGCACCTT < 41bp 0.478217667329286 0.839016569958871 0.045594454 0.8683338 prediction 0.678033139917741 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31604883 chr20:31604886 nonsynonymous SNV 0.509 4 24 hm5C_associated_SNPs_99748 0 0 1 0 2 BPIFB2 chr20:31604848 3'AG 31604848 Downstream 39bp
chr20 31604886 31604886 1 + T G SKCM 31604883 + 31604863 31604903 41 TCCAACCTGGTGCAGGGTGTCAATGTCCACCTGGGCACCTT TCCAACCTGGTGCAGGGTGTCAAGGTCCACCTGGGCACCTT < 41bp 0.478217667329286 0.839016569958871 0.045594454 0.8683338 prediction 0.678033139917741 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31604883 chr20:31604886 nonsynonymous SNV 0.509 4 24 hm5C_associated_SNPs_99748 0 0 1 0 2 BPIFB2 chr20:31604908 5'GT 31604908 Upstream 23bp
chr2 24245382 24245382 1 + T G UCEC 24245379 + 24245359 24245399 41 CGTCCAGGGCCTGGTACTAACTGTCCTGGTGAGGGGGCCTG CGTCCAGGGCCTGGTACTAACTGGCCTGGTGAGGGGGCCTG < 41bp 0.485469894202806 0.839014417831808 0.09478369 0.19817898 prediction 0.678028835663615 Functional Gain - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24245379 chr2:24245382 nonsynonymous SNV 0.384 2 24 hm5C_associated_SNPs_99749 0 0 0 0 2 MFSD2B chr2:24245303 3'AG 24245303 Downstream 80bp
chr2 24245382 24245382 1 + T G UCEC 24245379 + 24245359 24245399 41 CGTCCAGGGCCTGGTACTAACTGTCCTGGTGAGGGGGCCTG CGTCCAGGGCCTGGTACTAACTGGCCTGGTGAGGGGGCCTG < 41bp 0.485469894202806 0.839014417831808 0.09478369 0.19817898 prediction 0.678028835663615 Functional Gain - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24245379 chr2:24245382 nonsynonymous SNV 0.384 2 24 hm5C_associated_SNPs_99749 0 0 0 0 2 MFSD2B chr2:24245386 5'GT 24245386 Upstream 5bp
chr1 1219446 1219446 1 + C A COAD 1219442 + 1219422 1219462 41 CATGGACGGGAGAATGGAAGCAGCCACACGGGGGGGCTCTC CATGGACGGGAGAATGGAAGCAGCAACACGGGGGGGCTCTC < 41bp 0.506252414820879 0.845195540640841 0.8810577 0.5472875 prediction 0.677886251639924 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1219442 chr1:1219446 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_99752 0 0 0 0 2 SCNN1D chr1:1219358 3'AG 1219358 Downstream 89bp
chr1 1219446 1219446 1 + C A COAD 1219442 + 1219422 1219462 41 CATGGACGGGAGAATGGAAGCAGCCACACGGGGGGGCTCTC CATGGACGGGAGAATGGAAGCAGCAACACGGGGGGGCTCTC < 41bp 0.506252414820879 0.845195540640841 0.8810577 0.5472875 prediction 0.677886251639924 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1219442 chr1:1219446 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_99752 0 0 0 0 2 SCNN1D chr1:1219470 5'GT 1219470 Upstream 25bp
chr3 119526247 119526247 1 + C A UCEC 119526243 + 119526223 119526263 41 TGTATGTGGGGACAAGGCCACTGGCTATCACTTCAATGTCA TGTATGTGGGGACAAGGCCACTGGATATCACTTCAATGTCA < 41bp 0.457902348792313 0.838930254542337 0.2775154 0.3413605 prediction 0.677860509084673 Functional Gain - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119526243 chr3:119526247 synonymous SNV . 0 25 hm5C_associated_SNPs_99753 0 0 0 0 1 NR1I2 chr3:119526294 5'GT 119526294 Upstream 48bp
chr2 79254179 79254179 1 + C A rs115709602 79254175 + 79254155 79254195 41 CAAAGCTGGCTTGCCAGAAGCGGCCCTCTGGAAAACTGGTG CAAAGCTGGCTTGCCAGAAGCGGCACTCTGGAAAACTGGTG < 41bp 0.482378939384302 0.838921317519817 0.21015063 0.71653825 prediction 0.677842635039634 Functional Gain - REG3G ENSG00000143954 CDS Human protein_coding chr2:79254175 chr2:79254179 nonsynonymous SNV 0.970 1 25 hm5C_associated_SNPs_99754 0 0 0 0 1 REG3G chr2:79254160 3'AG 79254160 Downstream 20bp
chr1 236902635 236902635 1 + C A LUAD 236902631 + 236902611 236902651 41 TGGATTCGTCGCACGATCCCCTGGCTGGAGAACCGGACTCC TGGATTCGTCGCACGATCCCCTGGATGGAGAACCGGACTCC < 41bp 0.465431522409105 0.838897345886255 0.13630834 0.45451257 prediction 0.67779469177251 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236902631 chr1:236902635 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_99756 0 0 1 0 1 ACTN2 chr1:236902602 3'AG 236902602 Downstream 34bp
chr4 95539204 95539204 1 + C A rs141653509 95539200 + 95539180 95539220 41 TTGGCTTCCTCGGTAGCTTCCACACGGAGCATGCCCGAGAG TTGGCTTCCTCGGTAGCTTCCACAAGGAGCATGCCCGAGAG < 41bp 0.4973654061623 0.838771802950466 0.087876946 0.16747311 prediction 0.677543605900932 Functional Gain - PDLIM5 ENSG00000163110 CDS Human protein_coding chr4:95539200 chr4:95539204 synonymous SNV . 0 25 hm5C_associated_SNPs_99757 0 0 1 0 1 PDLIM5 chr4:95539155 3'AG 95539155 Downstream 50bp
chr19 38882740 38882740 1 + C A HNSC 38882736 + 38882716 38882756 41 AGAAGAGCCTGCTGGCTGCGCTGGCCGCACTGGGTCGAGGT AGAAGAGCCTGCTGGCTGCGCTGGACGCACTGGGTCGAGGT < 41bp 0.537719918142665 0.876473016305149 0.23518127 0.33306873 prediction 0.677506196324966 Functional Gain - SPRED3 ENSG00000188766 CDS Human protein_coding chr19:38882736 chr19:38882740 nonsynonymous SNV 0.977 1 25 hm5C_associated_SNPs_99758 0 0 1 0 1 SPRED3 chr19:38882754 5'GT 38882754 Upstream 15bp
chr1 24077388 24077388 1 + C A rs142849555 24077384 + 24077364 24077404 41 AGAAGAGCAATTCCCGAAAGCGCCCTCGGGATGCCCTGCAG AGAAGAGCAATTCCCGAAAGCGCCATCGGGATGCCCTGCAG < 41bp 0.546484306940164 0.885123027019528 0.08978593 0.22669503 prediction 0.677277440158728 Functional Gain - ELOA ENSG00000011007 CDS Human protein_coding chr1:24077384 chr1:24077388 nonsynonymous SNV 0.911 1 25 hm5C_associated_SNPs_99760 0 0 1 0 1 ELOA chr1:24077335 3'AG 24077335 Downstream 54bp
chr12 9006822 9006822 1 + C A UCEC 9006818 + 9006798 9006838 41 CCCCAAAAGGGCCGAAGTGACACGCTCATCAAGCCAGTTCT CCCCAAAAGGGCCGAAGTGACACGATCATCAAGCCAGTTCT < 41bp 0.535956711865821 0.874500043154492 0.029054672 0.022297591 prediction 0.677086662577342 Functional Gain - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9006818 chr12:9006822 nonsynonymous SNV 0.723 0 25 hm5C_associated_SNPs_99762 0 0 0 0 2 A2ML1 chr12:9006724 3'AG 9006724 Downstream 99bp
chr12 9006822 9006822 1 + C A UCEC 9006818 + 9006798 9006838 41 CCCCAAAAGGGCCGAAGTGACACGCTCATCAAGCCAGTTCT CCCCAAAAGGGCCGAAGTGACACGATCATCAAGCCAGTTCT < 41bp 0.535956711865821 0.874500043154492 0.029054672 0.022297591 prediction 0.677086662577342 Functional Gain - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9006818 chr12:9006822 nonsynonymous SNV 0.723 0 25 hm5C_associated_SNPs_99762 0 0 0 0 2 A2ML1 chr12:9006845 5'GT 9006845 Upstream 24bp
chr20 45717947 45717947 1 + C A LUAD 45717943 + 45717923 45717963 41 GAGACACAGACAGGCCGCACCGGGCCTCCGACGGGAAGCTC GAGACACAGACAGGCCGCACCGGGACTCCGACGGGAAGCTC < 41bp 0.527707180114693 0.866146868111254 0.84477305 0.8753637 prediction 0.676879375993123 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45717943 chr20:45717947 nonsynonymous SNV 0.984 2 25 hm5C_associated_SNPs_99766 0 0 0 0 2 EYA2 chr20:45717878 3'AG 45717878 Downstream 70bp
chr20 45717947 45717947 1 + C A LUAD 45717943 + 45717923 45717963 41 GAGACACAGACAGGCCGCACCGGGCCTCCGACGGGAAGCTC GAGACACAGACAGGCCGCACCGGGACTCCGACGGGAAGCTC < 41bp 0.527707180114693 0.866146868111254 0.84477305 0.8753637 prediction 0.676879375993123 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45717943 chr20:45717947 nonsynonymous SNV 0.984 2 25 hm5C_associated_SNPs_99766 0 0 0 0 2 EYA2 chr20:45718020 5'GT 45718020 Upstream 74bp
chr1 43783064 43783064 1 + C A LUAD 43783060 + 43783040 43783080 41 GGACGGGCTGAAGATGAACGCAGCCATCAAAATGCTGAAAG GGACGGGCTGAAGATGAACGCAGCAATCAAAATGCTGAAAG < 41bp 0.524874915978107 0.863308653786138 0.11883369 0.23141506 prediction 0.676867475616061 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43783060 chr1:43783064 synonymous SNV . 0 25 hm5C_associated_SNPs_99767 0 0 0 0 1 TIE1 chr1:43783080 5'GT 43783080 Upstream 17bp
chr8 22267554 22267554 1 + C A STAD 22267550 + 22267530 22267570 41 TGCACAGAGAAAGCGTTTTTCAGCCGTGTGCTCACTTACTT TGCACAGAGAAAGCGTTTTTCAGCAGTGTGCTCACTTACTT < 41bp 0.482680136758152 0.838422467790575 0.45592818 0.60952497 prediction 0.67684493558115 Functional Gain - SLC39A14 ENSG00000104635 CDS Human protein_coding chr8:22267550 chr8:22267554 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_99768 0 0 1 0 1 SLC39A14 chr8:22267628 5'GT 22267628 Upstream 75bp
chr17 65021068 65021068 1 + C A LUAD 65021064 + 65021044 65021084 41 ATCGGTGCTGGCAGGATCTACAGCCGCAAGAACAACATCGT ATCGGTGCTGGCAGGATCTACAGCAGCAAGAACAACATCGT < 41bp 0.457551477649899 0.838386607662919 0.32719666 0.20943001 prediction 0.676773215325838 Functional Gain - CACNG4 ENSG00000075461 CDS Human protein_coding chr17:65021064 chr17:65021068 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_99769 0 0 0 0 2 CACNG4 chr17:65020976 3'AG 65020976 Downstream 93bp
chr17 65021068 65021068 1 + C A LUAD 65021064 + 65021044 65021084 41 ATCGGTGCTGGCAGGATCTACAGCCGCAAGAACAACATCGT ATCGGTGCTGGCAGGATCTACAGCAGCAAGAACAACATCGT < 41bp 0.457551477649899 0.838386607662919 0.32719666 0.20943001 prediction 0.676773215325838 Functional Gain - CACNG4 ENSG00000075461 CDS Human protein_coding chr17:65021064 chr17:65021068 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_99769 0 0 0 0 2 CACNG4 chr17:65021116 5'GT 65021116 Upstream 49bp
chr3 135789339 135789339 1 + C A KIRC 135789335 + 135789315 135789355 41 TTCAGGATGTGGTGGATACCCACCCTGGTCTCACGTTCCTG TTCAGGATGTGGTGGATACCCACCATGGTCTCACGTTCCTG < 41bp 0.454714804157528 0.838343475248963 0.042517394 0.0769901 prediction 0.676686950497926 Functional Gain - PPP2R3A ENSG00000073711 CDS Human protein_coding chr3:135789335 chr3:135789339 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_99772 0 0 0 1 2 PPP2R3A chr3:135789320 3'AG 135789320 Downstream 20bp
chr3 135789339 135789339 1 + C A KIRC 135789335 + 135789315 135789355 41 TTCAGGATGTGGTGGATACCCACCCTGGTCTCACGTTCCTG TTCAGGATGTGGTGGATACCCACCATGGTCTCACGTTCCTG < 41bp 0.454714804157528 0.838343475248963 0.042517394 0.0769901 prediction 0.676686950497926 Functional Gain - PPP2R3A ENSG00000073711 CDS Human protein_coding chr3:135789335 chr3:135789339 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_99772 0 0 0 1 2 PPP2R3A chr3:135789394 5'GT 135789394 Upstream 56bp
chrX 128901662 128901662 1 + C A rs41304538 128901658 + 128901638 128901678 41 CATCGATGTCAGCCTGCTGTCTCCCGAGCATGTGAGTGCCC CATCGATGTCAGCCTGCTGTCTCCAGAGCATGTGAGTGCCC < 41bp 0.432187918998204 0.838339057421759 0.071713656 0.93476284 prediction 0.676678114843518 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128901658 chrX:128901662 synonymous SNV . 0 25 hm5C_associated_SNPs_99773 0 0 0 0 2 XPNPEP2 chrX:128901579 3'AG 128901579 Downstream 84bp
chrX 128901662 128901662 1 + C A rs41304538 128901658 + 128901638 128901678 41 CATCGATGTCAGCCTGCTGTCTCCCGAGCATGTGAGTGCCC CATCGATGTCAGCCTGCTGTCTCCAGAGCATGTGAGTGCCC < 41bp 0.432187918998204 0.838339057421759 0.071713656 0.93476284 prediction 0.676678114843518 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128901658 chrX:128901662 synonymous SNV . 0 25 hm5C_associated_SNPs_99773 0 0 0 0 2 XPNPEP2 chrX:128901668 5'GT 128901668 Upstream 7bp
chr8 24256470 24256470 1 + C A rs2291577 24256466 + 24256446 24256486 41 GGATAAGATAAAGGTGGTGCCCAGCGCAAGCACCACGTTTG GGATAAGATAAAGGTGGTGCCCAGAGCAAGCACCACGTTTG < 41bp 0.481840454082627 0.838313792872535 0.09874499 0.3207396 prediction 0.676627585745071 Functional Gain - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24256466 chr8:24256470 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_99774 0 0 0 0 2 ADAMDEC1 chr8:24256387 3'AG 24256387 Downstream 84bp
chr8 24256470 24256470 1 + C A rs2291577 24256466 + 24256446 24256486 41 GGATAAGATAAAGGTGGTGCCCAGCGCAAGCACCACGTTTG GGATAAGATAAAGGTGGTGCCCAGAGCAAGCACCACGTTTG < 41bp 0.481840454082627 0.838313792872535 0.09874499 0.3207396 prediction 0.676627585745071 Functional Gain - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24256466 chr8:24256470 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_99774 0 0 0 0 2 ADAMDEC1 chr8:24256553 5'GT 24256553 Upstream 84bp
chr1 43233204 43233204 1 + C A rs201893746 43233200 + 43233180 43233220 41 GAGCCCTGGTGGAGCTCACCCCGACCCCCGGCGGCCTGGCC GAGCCCTGGTGGAGCTCACCCCGAACCCCGGCGGCCTGGCC < 41bp 0.498230331642145 0.838303831317945 0.45769566 0.4095089 prediction 0.676607662635889 Functional Gain - C1orf50 ENSG00000164008 CDS Human protein_coding chr1:43233200 chr1:43233204 nonsynonymous SNV 0.707 0 25 hm5C_associated_SNPs_99775 0 0 1 0 2 C1orf50 chr1:43233180 3'AG 43233180 Downstream 25bp
chr1 43233204 43233204 1 + C A rs201893746 43233200 + 43233180 43233220 41 GAGCCCTGGTGGAGCTCACCCCGACCCCCGGCGGCCTGGCC GAGCCCTGGTGGAGCTCACCCCGAACCCCGGCGGCCTGGCC < 41bp 0.498230331642145 0.838303831317945 0.45769566 0.4095089 prediction 0.676607662635889 Functional Gain - C1orf50 ENSG00000164008 CDS Human protein_coding chr1:43233200 chr1:43233204 nonsynonymous SNV 0.707 0 25 hm5C_associated_SNPs_99775 0 0 1 0 2 C1orf50 chr1:43233295 5'GT 43233295 Upstream 92bp
chr10 103987414 103987414 1 + C A COAD 103987410 + 103987390 103987430 41 TCATTCCCCATAGCCCTGATCTACCTGGTTCTCATCGCTGT TCATTCCCCATAGCCCTGATCTACATGGTTCTCATCGCTGT < 41bp 0.453034546612351 0.838168046100634 0.122676075 0.79956377 prediction 0.676336092201269 Functional Gain - ELOVL3 ENSG00000119915 CDS Human protein_coding chr10:103987410 chr10:103987414 nonsynonymous SNV 0.803 2 25 hm5C_associated_SNPs_99781 0 0 0 0 1 ELOVL3 chr10:103987383 3'AG 103987383 Downstream 32bp
chr17 48614455 48614455 1 + C A LIHC 48614451 + 48614431 48614471 41 TACGGCGAGGACTACAGCCGCTCCCGGGGCTCCCCGTCCTC TACGGCGAGGACTACAGCCGCTCCAGGGGCTCCCCGTCCTC < 41bp 0.442508458954389 0.83815417898071 0.064935625 0.917377 prediction 0.676308357961419 Functional Gain - EPN3 ENSG00000049283 CDS Human protein_coding chr17:48614451 chr17:48614455 synonymous SNV . 0 25 hm5C_associated_SNPs_99782 0 0 0 0 1 EPN3 chr17:48614479 5'GT 48614479 Upstream 25bp
chr21 42807927 42807927 1 + T G COAD 42807924 + 42807904 42807944 41 CAAGAGCTCCGTGTTGGAGGCACTGTCAGGAGTTGCCCTTC CAAGAGCTCCGTGTTGGAGGCACGGTCAGGAGTTGCCCTTC < 41bp 0.476849567535552 0.837952154872934 0.2753111 0.72343606 prediction 0.675904309745869 Functional Gain - MX1 ENSG00000157601 CDS Human protein_coding chr21:42807924 chr21:42807927 nonsynonymous SNV 0.300 5 24 hm5C_associated_SNPs_99787 0 0 0 0 1 MX1 chr21:42807956 5'GT 42807956 Upstream 30bp
chr3 195953940 195953940 1 + C A UCEC 195953936 + 195953916 195953956 41 GCCGTCTACCTGTACAAGAACACCCTTTGCCCCATCAAGAG GCCGTCTACCTGTACAAGAACACCATTTGCCCCATCAAGAG < 41bp 0.435910036263291 0.837816594909784 0.12011886 0.10791895 prediction 0.675633189819568 Functional Gain - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195953936 chr3:195953940 nonsynonymous SNV 0.888 0 25 hm5C_associated_SNPs_99793 0 0 1 0 1 SLC51A chr3:195953990 5'GT 195953990 Upstream 51bp
chr11 134180992 134180992 1 + C A LUSC 134180988 + 134180968 134181008 41 GCCCCGAGTACCCAAACTTCCTCCCAAGGCTGTGTATCCCC GCCCCGAGTACCCAAACTTCCTCCAAAGGCTGTGTATCCCC < 41bp 0.430237615268578 0.837779998776772 0.09636387 0.9726023 prediction 0.675559997553544 Functional Gain - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134180988 chr11:134180992 synonymous SNV . 0 25 hm5C_associated_SNPs_99795 0 0 0 0 1 GLB1L3 chr11:134180958 3'AG 134180958 Downstream 35bp
chrX 151818947 151818947 1 + C A UCEC 151818943 + 151818923 151818963 41 GTTCAGAGGGAAGTTAACAGCTACCTTGTGCAAGTCTACTG GTTCAGAGGGAAGTTAACAGCTACATTGTGCAAGTCTACTG < 41bp 0.549403190700802 0.88708396985912 0.23206273 0.2611412 prediction 0.675361558316635 Functional Gain - GABRQ ENSG00000147402 CDS Human other chrX:151818943 chrX:151818947 nonsynonymous SNV 0.944 2 25 hm5C_associated_SNPs_99801 0 0 0 0 2 GABRQ chrX:151818891 3'AG 151818891 Downstream 57bp
chrX 151818947 151818947 1 + C A UCEC 151818943 + 151818923 151818963 41 GTTCAGAGGGAAGTTAACAGCTACCTTGTGCAAGTCTACTG GTTCAGAGGGAAGTTAACAGCTACATTGTGCAAGTCTACTG < 41bp 0.549403190700802 0.88708396985912 0.23206273 0.2611412 prediction 0.675361558316635 Functional Gain - GABRQ ENSG00000147402 CDS Human other chrX:151818943 chrX:151818947 nonsynonymous SNV 0.944 2 25 hm5C_associated_SNPs_99801 0 0 0 0 2 GABRQ chrX:151819043 5'GT 151819043 Upstream 97bp
chr19 17972156 17972156 1 + C A UCEC 17972152 + 17972132 17972172 41 CTGCCCACCCCCAAATGCCACACGCCGCCCCTCTACCGCAT CTGCCCACCCCCAAATGCCACACGACGCCCCTCTACCGCAT < 41bp 0.469689144080616 0.83765843761882 0.0018073618 0.0036312938 prediction 0.67531687523764 Functional Gain - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17972152 chr19:17972156 nonsynonymous SNV 0.026 0 25 hm5C_associated_SNPs_99803 0 0 0 0 1 RPL18A chr19:17972102 3'AG 17972102 Downstream 55bp
chr1 20005147 20005147 1 + C A PRAD 20005143 + 20005123 20005163 41 AGCAGGAAGGCCCTGAAGGCCAGCCTGACGCTGGGCATCCT AGCAGGAAGGCCCTGAAGGCCAGCATGACGCTGGGCATCCT < 41bp 0.539581276395368 0.877119807829126 0.225052 0.23243275 prediction 0.675077062867517 Functional Gain - HTR6 ENSG00000158748 CDS Human protein_coding chr1:20005143 chr1:20005147 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_99804 0 0 0 0 2 HTR6 chr1:20005060 3'AG 20005060 Downstream 88bp
chr1 20005147 20005147 1 + C A PRAD 20005143 + 20005123 20005163 41 AGCAGGAAGGCCCTGAAGGCCAGCCTGACGCTGGGCATCCT AGCAGGAAGGCCCTGAAGGCCAGCATGACGCTGGGCATCCT < 41bp 0.539581276395368 0.877119807829126 0.225052 0.23243275 prediction 0.675077062867517 Functional Gain - HTR6 ENSG00000158748 CDS Human protein_coding chr1:20005143 chr1:20005147 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_99804 0 0 0 0 2 HTR6 chr1:20005218 5'GT 20005218 Upstream 72bp
chr11 64329573 64329573 1 + C A UCEC 64329569 + 64329549 64329589 41 CCAACATTCGTCATCTACTGCGGCCTGCGGTTCGTGGCCGC CCAACATTCGTCATCTACTGCGGCATGCGGTTCGTGGCCGC < 41bp 0.460300332319296 0.837516551324708 0.7860987 0.80041003 prediction 0.675033102649416 Functional Gain - SLC22A11 ENSG00000168065 CDS Human protein_coding chr11:64329569 chr11:64329573 nonsynonymous SNV 0.017 3 25 hm5C_associated_SNPs_99806 0 0 0 0 1 SLC22A11 chr11:64329630 5'GT 64329630 Upstream 58bp
chr19 11144002 11144002 1 + C A HNSC 11143998 + 11143978 11144018 41 CAGGACCGAGCCCACCGCATCGGGCAGCAGAACGAGGTGCG CAGGACCGAGCCCACCGCATCGGGAAGCAGAACGAGGTGCG < 41bp 0.49556404721983 0.837474152399245 0.88587874 0.9210372 prediction 0.67494830479849 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11143998 chr19:11144002 nonsynonymous SNV 0.996 5 25 hm5C_associated_SNPs_99809 0 0 1 0 1 SMARCA4 chr19:11143966 3'AG 11143966 Downstream 37bp
chr10 45939224 45939224 1 + C A COAD 45939220 + 45939200 45939240 41 GGGAGCAGCTGTCGGAGTACCTGACCGTGGTGATCTTCACC GGGAGCAGCTGTCGGAGTACCTGAACGTGGTGATCTTCACC < 41bp 0.45195630111023 0.837383515803255 0.23296589 0.8994203 prediction 0.674767031606511 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45939220 chr10:45939224 nonsynonymous SNV 0.919 5 25 hm5C_associated_SNPs_99813 0 0 0 0 2 ALOX5 chr10:45939176 3'AG 45939176 Downstream 49bp
chr10 45939224 45939224 1 + C A COAD 45939220 + 45939200 45939240 41 GGGAGCAGCTGTCGGAGTACCTGACCGTGGTGATCTTCACC GGGAGCAGCTGTCGGAGTACCTGAACGTGGTGATCTTCACC < 41bp 0.45195630111023 0.837383515803255 0.23296589 0.8994203 prediction 0.674767031606511 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45939220 chr10:45939224 nonsynonymous SNV 0.919 5 25 hm5C_associated_SNPs_99813 0 0 0 0 2 ALOX5 chr10:45939276 5'GT 45939276 Upstream 53bp
chr12 107141289 107141289 1 + C A LUSC 107141285 + 107141265 107141305 41 GCTGGGTCCCCAGCTGAGAACTCCCAACAGCTGCCCTGTAT GCTGGGTCCCCAGCTGAGAACTCCAAACAGCTGCCCTGTAT < 41bp 0.426885773874399 0.837292166709575 0.08957559 0.9580679 prediction 0.674584333419151 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107141285 chr12:107141289 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_99815 0 0 0 0 2 RFX4 chr12:107141215 3'AG 107141215 Downstream 75bp
chr12 107141289 107141289 1 + C A LUSC 107141285 + 107141265 107141305 41 GCTGGGTCCCCAGCTGAGAACTCCCAACAGCTGCCCTGTAT GCTGGGTCCCCAGCTGAGAACTCCAAACAGCTGCCCTGTAT < 41bp 0.426885773874399 0.837292166709575 0.08957559 0.9580679 prediction 0.674584333419151 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107141285 chr12:107141289 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_99815 0 0 0 0 2 RFX4 chr12:107141377 5'GT 107141377 Upstream 89bp
chr11 67186991 67186991 1 - G T UCEC 67186995 - 67186975 67187015 41 GGTGCAGACGCCATGCCTGCCGCCCCCGCCAGCGCCAGCCA GGTGCAGACGCCATGCCTGCCGCCACCGCCAGCGCCAGCCA < 41bp 0.550112297230563 0.887291923930177 0.09147069 0.10160288 prediction 0.674359253399227 Functional Gain - CARNS1 ENSG00000172508;ENSG00000172531 CDS Human other chr11:67186995 chr11:67186991 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_99817 0 0 0 0 1 CARNS1 chr11:67187068 3'AG 67187068 Downstream 78bp
chr11 1955808 1955808 1 + C A LUAD 1955804 + 1955784 1955824 41 GAAGAGAGGCAAGAAGCAGACAGCCCGGGAAATGAAGAAGA GAAGAGAGGCAAGAAGCAGACAGCACGGGAAATGAAGAAGA < 41bp 0.467962659194583 0.837148575689808 0.4196561 0.6011177 prediction 0.674297151379617 Functional Gain - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1955804 chr11:1955808 synonymous SNV . 0 25 hm5C_associated_SNPs_99818 0 0 0 0 2 TNNT3 chr11:1955776 3'AG 1955776 Downstream 33bp
chr11 1955808 1955808 1 + C A LUAD 1955804 + 1955784 1955824 41 GAAGAGAGGCAAGAAGCAGACAGCCCGGGAAATGAAGAAGA GAAGAGAGGCAAGAAGCAGACAGCACGGGAAATGAAGAAGA < 41bp 0.467962659194583 0.837148575689808 0.4196561 0.6011177 prediction 0.674297151379617 Functional Gain - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1955804 chr11:1955808 synonymous SNV . 0 25 hm5C_associated_SNPs_99818 0 0 0 0 2 TNNT3 chr11:1955885 5'GT 1955885 Upstream 78bp
chr19 36207421 36207421 1 + C A SKCM 36207417 + 36207397 36207437 41 TGTAGCCTTTGTCCTCAGCGCTCCCGGGACTTCTCGGCCAT TGTAGCCTTTGTCCTCAGCGCTCCAGGGACTTCTCGGCCAT < 41bp 0.539038877472319 0.876165381028366 0.021318167 0.7625029 prediction 0.674253007112094 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36207417 chr19:36207421 synonymous SNV . 0 25 hm5C_associated_SNPs_99819 0 0 0 0 1 ZBTB32 chr19:36207380 3'AG 36207380 Downstream 42bp
chr12 71834042 71834042 1 + C A UCEC 71834038 + 71834018 71834058 41 CCGACCTGGGGCTCTCGGAGCTGCCTTCCAACCTCAGCGTC CCGACCTGGGGCTCTCGGAGCTGCATTCCAACCTCAGCGTC < 41bp 0.525753001600668 0.862842207215689 0.2727438 0.26244366 prediction 0.674178411230043 Functional Gain - LGR5 ENSG00000139292 CDS Human protein_coding chr12:71834038 chr12:71834042 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_99822 0 0 0 0 1 LGR5 chr12:71834072 5'GT 71834072 Upstream 31bp
chr1 35258611 35258611 1 + C A rs560307013 35258607 + 35258587 35258627 41 GCTCGTGCGGTCCAGCAGGGCTCCCGCGGGCGTCACTCCGG GCTCGTGCGGTCCAGCAGGGCTCCAGCGGGCGTCACTCCGG < 41bp 0.490359431014675 0.837046349091887 0.7114056 0.94105047 prediction 0.674092698183774 Functional Gain - GJA4 ENSG00000187513 UTR5 Human protein_coding chr1:35258607 chr1:35258611 . . 0 25 hm5C_associated_SNPs_99824 0 0 0 0 1 GJA4 chr1:35258669 5'GT 35258669 Upstream 59bp
chrX 105421276 105421276 1 + C A rs139545664 105421272 + 105421252 105421292 41 GGGCGGAGCCTCGTCGGAGCCGCTCGGAAGGGAGCTGTACC GGGCGGAGCCTCGTCGGAGCCGCTAGGAAGGGAGCTGTACC < 41bp 0.507789953117141 0.84482911899052 0.39590454 0.69263804 prediction 0.674078331746758 Functional Gain - MUM1L1 ENSG00000157502 UTR5 Human protein_coding chrX:105421272 chrX:105421276 . . 0 25 hm5C_associated_SNPs_99825 0 0 0 0 2 MUM1L1 chrX:105421217 3'AG 105421217 Downstream 60bp
chrX 105421276 105421276 1 + C A rs139545664 105421272 + 105421252 105421292 41 GGGCGGAGCCTCGTCGGAGCCGCTCGGAAGGGAGCTGTACC GGGCGGAGCCTCGTCGGAGCCGCTAGGAAGGGAGCTGTACC < 41bp 0.507789953117141 0.84482911899052 0.39590454 0.69263804 prediction 0.674078331746758 Functional Gain - MUM1L1 ENSG00000157502 UTR5 Human protein_coding chrX:105421272 chrX:105421276 . . 0 25 hm5C_associated_SNPs_99825 0 0 0 0 2 MUM1L1 chrX:105421352 5'GT 105421352 Upstream 77bp
chr1 43773165 43773165 1 + C A LUAD 43773161 + 43773141 43773181 41 CAGTGCCCAGGCATATCAGGCTGCCGGGGCCTCACCTTCTG CAGTGCCCAGGCATATCAGGCTGCAGGGGCCTCACCTTCTG < 41bp 0.465666940578632 0.837019326800416 0.42684877 0.67100406 prediction 0.674038653600832 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43773161 chr1:43773165 synonymous SNV . 0 25 hm5C_associated_SNPs_99826 0 0 0 0 2 TIE1 chr1:43773103 3'AG 43773103 Downstream 63bp
chr1 43773165 43773165 1 + C A LUAD 43773161 + 43773141 43773181 41 CAGTGCCCAGGCATATCAGGCTGCCGGGGCCTCACCTTCTG CAGTGCCCAGGCATATCAGGCTGCAGGGGCCTCACCTTCTG < 41bp 0.465666940578632 0.837019326800416 0.42684877 0.67100406 prediction 0.674038653600832 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43773161 chr1:43773165 synonymous SNV . 0 25 hm5C_associated_SNPs_99826 0 0 0 0 2 TIE1 chr1:43773243 5'GT 43773243 Upstream 79bp
chr3 36524582 36524582 1 + C A STAD 36524578 + 36524558 36524598 41 GCACCCCAGCGGTGCATGGGCAAGCTGGTAAGGGCTTGTGC GCACCCCAGCGGTGCATGGGCAAGATGGTAAGGGCTTGTGC < 41bp 0.527232449126891 0.864203438196447 0.49776673 0.4917099 prediction 0.673941978139113 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36524578 chr3:36524582 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_99829 0 0 0 1 2 STAC chr3:36524484 3'AG 36524484 Downstream 99bp
chr3 36524582 36524582 1 + C A STAD 36524578 + 36524558 36524598 41 GCACCCCAGCGGTGCATGGGCAAGCTGGTAAGGGCTTGTGC GCACCCCAGCGGTGCATGGGCAAGATGGTAAGGGCTTGTGC < 41bp 0.527232449126891 0.864203438196447 0.49776673 0.4917099 prediction 0.673941978139113 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36524578 chr3:36524582 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_99829 0 0 0 1 2 STAC chr3:36524584 5'GT 36524584 Upstream 3bp
chr17 34313634 34313634 1 - G T UCEC 34313638 - 34313618 34313658 41 TTCTTCCTCCTCATCACCATCGCCCTAGGGACCAAGACTGA TTCTTCCTCCTCATCACCATCGCCATAGGGACCAAGACTGA < 41bp 0.445197171408955 0.836850198384367 0.1138801 0.7932554 prediction 0.673700396768733 Functional Gain - CCL14 ENSG00000213494;ENSG00000266956 CDS Human other chr17:34313638 chr17:34313634 nonsynonymous SNV 0.009 1 25 hm5C_associated_SNPs_99834 0 0 0 0 1 CCL14 chr17:34313607 5'GT 34313607 Upstream 28bp
chr2 135659396 135659396 1 + C A HNSC 135659392 + 135659372 135659412 41 AACTCAAAGCCGGCAATGCCCTGGCATTTTTGGGTCTTGAG AACTCAAAGCCGGCAATGCCCTGGAATTTTTGGGTCTTGAG < 41bp 0.493961358849325 0.836824983698053 0.0959782 0.11116946 prediction 0.673649967396105 Functional Gain - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135659392 chr2:135659396 nonsynonymous SNV 0.985 0 25 hm5C_associated_SNPs_99835 0 0 0 0 1 ACMSD chr2:135659368 3'AG 135659368 Downstream 29bp
chr8 143763436 143763436 1 + C A BLCA 143763432 + 143763412 143763452 41 CGTGGGCAAGAAGAACATCACGTGCTGTGACACCGACTTGT CGTGGGCAAGAAGAACATCACGTGATGTGACACCGACTTGT < 41bp 0.481343613510372 0.836681688876131 0.449802 0.8069197 prediction 0.673363377752261 Functional Gain - PSCA ENSG00000167653 CDS Human protein_coding chr8:143763432 chr8:143763436 stopgain 0.938 1 25 hm5C_associated_SNPs_99840 0 0 0 0 1 PSCA chr8:143763339 3'AG 143763339 Downstream 98bp
chr3 51743434 51743434 1 + T G COAD 51743431 + 51743411 51743451 41 GGTGTTATTGGCGGTTCCTACAGTGATGTCTCCATCCAGGT GGTGTTATTGGCGGTTCCTACAGGGATGTCTCCATCCAGGT < 41bp 0.518945249821001 0.855532341868342 0.1654172 0.93781286 prediction 0.673174184094683 Functional Gain - GRM2 ENSG00000164082 CDS Human protein_coding chr3:51743431 chr3:51743434 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_99843 0 0 0 0 1 GRM2 chr3:51743449 5'GT 51743449 Upstream 16bp
chr12 124132567 124132567 1 + C A COAD 124132563 + 124132543 124132583 41 TGGAGACTTCTTCGGAGACCCTGGCAACCCTCCTGAATTTA TGGAGACTTCTTCGGAGACCCTGGAAACCCTCCTGAATTTA < 41bp 0.463390249896811 0.836586044065407 0.12236631 0.36254048 prediction 0.673172088130815 Functional Gain - GTF2H3 ENSG00000111358 CDS Human protein_coding chr12:124132563 chr12:124132567 synonymous SNV . 0 25 hm5C_associated_SNPs_99844 0 0 1 0 1 GTF2H3 chr12:124132510 3'AG 124132510 Downstream 58bp
chr20 31607413 31607413 1 + C A COAD 31607409 + 31607389 31607429 41 GCCCGCCAGTTTCCCGAGCCCATGCCTGTGGTGCTCAAGGT GCCCGCCAGTTTCCCGAGCCCATGACTGTGGTGCTCAAGGT < 41bp 0.476444063106248 0.836525558401033 0.18545967 0.24094883 prediction 0.673051116802066 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31607409 chr20:31607413 nonsynonymous SNV 0.359 1 25 hm5C_associated_SNPs_99847 0 0 1 0 1 BPIFB2 chr20:31607386 3'AG 31607386 Downstream 28bp
chr12 113515246 113515246 1 + C A LUAD 113515242 + 113515222 113515262 41 AGTACAGGCACCATGCGGCCCGTGCGGCGCAACTTCTACGA AGTACAGGCACCATGCGGCCCGTGAGGCGCAACTTCTACGA < 41bp 0.478804546090932 0.83650808232295 0.049785167 0.11470792 prediction 0.6730161646459 Functional Gain - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113515242 chr12:113515246 synonymous SNV . 0 25 hm5C_associated_SNPs_99848 0 0 0 0 1 DTX1 chr12:113515229 3'AG 113515229 Downstream 18bp
chr14 75538559 75538559 1 + C A BLCA 75538555 + 75538535 75538575 41 TGTTTGACTCCTCCAGGGCCCGGGCTAAGGGCACAGAACTA TGTTTGACTCCTCCAGGGCCCGGGATAAGGGCACAGAACTA < 41bp 0.521853315906558 0.858312879064825 0.89101136 0.90313494 prediction 0.672919126316534 Functional Gain - ZC2HC1C ENSG00000119703 CDS Human protein_coding chr14:75538555 chr14:75538559 nonsynonymous SNV 0.945 4 25 hm5C_associated_SNPs_99850 0 0 0 0 1 ZC2HC1C chr14:75538614 5'GT 75538614 Upstream 56bp
chr17 7948212 7948212 1 + C A UCEC 7948208 + 7948188 7948228 41 TCCCAGTTCCTGAATGGTCTCAACCCTGTCCTGATCCGCCG TCCCAGTTCCTGAATGGTCTCAACACTGTCCTGATCCGCCG < 41bp 0.455484836889906 0.83634418440457 0.03282574 0.106491566 prediction 0.67268836880914 Functional Gain - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7948208 chr17:7948212 nonsynonymous SNV 0.261 5 25 hm5C_associated_SNPs_99852 0 0 0 0 1 ALOX15B chr17:7948147 3'AG 7948147 Downstream 66bp
chr7 151817987 151817987 1 + C A rs143156028 151817983 + 151817963 151818003 41 TTGTCTAGATATGTCAGAGACTCGCTCATCAGACCCGCCAC TTGTCTAGATATGTCAGAGACTCGATCATCAGACCCGCCAC < 41bp 0.47153101848952 0.836342507894867 0.065832436 0.3902282 prediction 0.672685015789734 Functional Gain - GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151817983 chr7:151817987 synonymous SNV . 0 25 hm5C_associated_SNPs_99853 0 0 1 0 2 GALNT11 chr7:151817916 3'AG 151817916 Downstream 72bp
chr7 151817987 151817987 1 + C A rs143156028 151817983 + 151817963 151818003 41 TTGTCTAGATATGTCAGAGACTCGCTCATCAGACCCGCCAC TTGTCTAGATATGTCAGAGACTCGATCATCAGACCCGCCAC < 41bp 0.47153101848952 0.836342507894867 0.065832436 0.3902282 prediction 0.672685015789734 Functional Gain - GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151817983 chr7:151817987 synonymous SNV . 0 25 hm5C_associated_SNPs_99853 0 0 1 0 2 GALNT11 chr7:151818053 5'GT 151818053 Upstream 67bp
chr9 137772710 137772710 1 + C A UCEC 137772706 + 137772686 137772726 41 GTGGGGGTCCTGGGCGCTGCCACCCTGCTGCTCTCTTTCCT GTGGGGGTCCTGGGCGCTGCCACCATGCTGCTCTCTTTCCT < 41bp 0.523891651168083 0.86013044966768 0.32273448 0.49593532 prediction 0.672477596999194 Functional Gain - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137772706 chr9:137772710 nonsynonymous SNV 0.005 1 25 hm5C_associated_SNPs_99859 0 0 0 0 1 FCN2 chr9:137772767 5'GT 137772767 Upstream 58bp
chr14 61997281 61997281 1 + C A UCEC 61997277 + 61997257 61997297 41 GATGAGGTGGTCTACCCTACCTGGCTCCATGAAGATGCCAC GATGAGGTGGTCTACCCTACCTGGATCCATGAAGATGCCAC < 41bp 0.466249633865104 0.836200367582764 0.021835566 0.124551 prediction 0.672400735165528 Functional Gain - PRKCH ENSG00000027075;ENSG00000258989 CDS Human other chr14:61997277 chr14:61997281 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_99860 0 0 0 0 1 PRKCH chr14:61997313 5'GT 61997313 Upstream 33bp
chr12 52309211 52309211 1 + C A UCEC 52309207 + 52309187 52309227 41 CTTCGGTACACAGGGCAAACCAGCCATTGCCCACCGCGACT CTTCGGTACACAGGGCAAACCAGCAATTGCCCACCGCGACT < 41bp 0.446950426654932 0.836062224865541 0.374886 0.5928827 prediction 0.672124449731082 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309207 chr12:52309211 synonymous SNV . 0 25 hm5C_associated_SNPs_99863 0 0 0 0 1 ACVRL1 chr12:52309284 5'GT 52309284 Upstream 74bp
chr11 20417373 20417373 1 + T G LUAD 20417370 + 20417350 20417390 41 TGTAGAAGATCTTTATGAACCGGTGTCAGTACCCTTCTCAT TGTAGAAGATCTTTATGAACCGGGGTCAGTACCCTTCTCAT < 41bp 0.486240709500724 0.83601174836137 0.35914892 0.9408473 prediction 0.67202349672274 Functional Gain - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20417370 chr11:20417373 nonsynonymous SNV 0.022 0 24 hm5C_associated_SNPs_99865 0 0 1 0 1 PRMT3 chr11:20417349 3'AG 20417349 Downstream 25bp
chr8 120428828 120428828 1 + C A COAD 120428824 + 120428804 120428844 41 TCCGAAAGCAGTGCCTTTGCCTGACCTTCCTGCTTCTCCAT TCCGAAAGCAGTGCCTTTGCCTGAACTTCCTGCTTCTCCAT < 41bp 0.522500114724206 0.858396184806413 0.3412027 0.29246917 prediction 0.671792140164413 Functional Gain - NOV ENSG00000136999 CDS Human protein_coding chr8:120428824 chr8:120428828 nonsynonymous SNV 0.932 0 25 hm5C_associated_SNPs_99868 0 0 0 0 1 NOV chr8:120428856 5'GT 120428856 Upstream 29bp
chr14 23848562 23848562 1 + C A COAD 23848558 + 23848538 23848578 41 GCCTATGATGCCTTCAAGATCTACCGGACTGAGATGGCACC GCCTATGATGCCTTCAAGATCTACAGGACTGAGATGGCACC < 41bp 0.450619769707743 0.835849182297171 0.13505661 0.7760352 prediction 0.671698364594342 Functional Gain - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23848558 chr14:23848562 synonymous SNV . 0 25 hm5C_associated_SNPs_99869 0 0 0 0 1 CMTM5 chr14:23848508 3'AG 23848508 Downstream 55bp
chr16 30770552 30770552 1 - G T UCEC 30770556 - 30770536 30770576 41 CTTCCCAGGTGCGGCTGGATCTGTCTTTGACTTACATGGGG CTTCCCAGGTGCGGCTGGATCTGTATTTGACTTACATGGGG < 41bp 0.457366963898216 0.835833052754947 0.108232975 0.1459947 prediction 0.671666105509893 Functional Gain - CCDC189 ENSG00000196118 CDS Human protein_coding chr16:30770556 chr16:30770552 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_99870 0 0 0 0 2 CCDC189 chr16:30770499 5'GT 30770499 Upstream 54bp
chr16 30770552 30770552 1 - G T UCEC 30770556 - 30770536 30770576 41 CTTCCCAGGTGCGGCTGGATCTGTCTTTGACTTACATGGGG CTTCCCAGGTGCGGCTGGATCTGTATTTGACTTACATGGGG < 41bp 0.457366963898216 0.835833052754947 0.108232975 0.1459947 prediction 0.671666105509893 Functional Gain - CCDC189 ENSG00000196118 CDS Human protein_coding chr16:30770556 chr16:30770552 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_99870 0 0 0 0 2 CCDC189 chr16:30770568 3'AG 30770568 Downstream 17bp
chr19 48830117 48830117 1 + C A LAML 48830113 + 48830093 48830133 41 ACTGCAGCCATGTCACTCCTCTTGCTGGTGGTCTCAGCCCT ACTGCAGCCATGTCACTCCTCTTGATGGTGGTCTCAGCCCT < 41bp 0.459797210235294 0.835709653002304 0.1982241 0.23772904 prediction 0.671419306004608 Functional Gain - EMP3 ENSG00000142227 CDS Human protein_coding chr19:48830113 chr19:48830117 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99872 0 0 1 0 2 EMP3 chr19:48830087 3'AG 48830087 Downstream 31bp
chr19 48830117 48830117 1 + C A LAML 48830113 + 48830093 48830133 41 ACTGCAGCCATGTCACTCCTCTTGCTGGTGGTCTCAGCCCT ACTGCAGCCATGTCACTCCTCTTGATGGTGGTCTCAGCCCT < 41bp 0.459797210235294 0.835709653002304 0.1982241 0.23772904 prediction 0.671419306004608 Functional Gain - EMP3 ENSG00000142227 CDS Human protein_coding chr19:48830113 chr19:48830117 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99872 0 0 1 0 2 EMP3 chr19:48830179 5'GT 48830179 Upstream 63bp
chr20 5100291 5100291 1 - G T UCEC 5100295 - 5100275 5100315 41 CACGTCTCTTTGGTGCAGCTCACCCTGCGGTCTGAGGGCTT CACGTCTCTTTGGTGCAGCTCACCATGCGGTCTGAGGGCTT < 41bp 0.447127154295792 0.835671672258179 0.24392572 0.15253562 prediction 0.671343344516358 Functional Gain - PCNA ENSG00000132646 CDS Human protein_coding chr20:5100295 chr20:5100291 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_99873 0 0 1 0 1 PCNA chr20:5100224 5'GT 5100224 Upstream 68bp
chr8 103572709 103572709 1 + C A COAD 103572705 + 103572685 103572725 41 GAAGAACAACAAATAGAATTCTGGCTTCCTCCTGCTGTAGC GAAGAACAACAAATAGAATTCTGGATTCCTCCTGCTGTAGC < 41bp 0.525380100473318 0.861024437745856 0.7352736 0.85269904 prediction 0.671288674545077 Functional Gain - ODF1 ENSG00000155087 CDS Human protein_coding chr8:103572705 chr8:103572709 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_99876 0 0 0 0 1 ODF1 chr8:103572680 3'AG 103572680 Downstream 30bp
chrX 118708684 118708684 1 + C A LUAD 118708680 + 118708660 118708700 41 GACCCCGCTCGCGACATGTCCACCCCGGCTCGGCGGCGCCT GACCCCGCTCGCGACATGTCCACCACGGCTCGGCGGCGCCT < 41bp 0.524373709712859 0.859986344915052 0.06763643 0.037604213 prediction 0.671225270404386 Functional Gain - UBE2A ENSG00000077721 CDS Human protein_coding chrX:118708680 chrX:118708684 nonsynonymous SNV 0.982 1 25 hm5C_associated_SNPs_99879 0 0 1 0 1 UBE2A chrX:118708718 5'GT 118708718 Upstream 35bp
chr20 55052076 55052076 1 + C A UCEC 55052072 + 55052052 55052092 41 GCTGAAGCTTTCTGATAATCCTGCCTGGGAAGGGGATAAAG GCTGAAGCTTTCTGATAATCCTGCATGGGAAGGGGATAAAG < 41bp 0.554309296858546 0.889844297780503 0.1068908 0.08932683 prediction 0.671070001843914 Functional Gain - RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55052072 chr20:55052076 synonymous SNV . 0 25 hm5C_associated_SNPs_99883 0 0 1 0 1 RTFDC1 chr20:55052041 3'AG 55052041 Downstream 36bp
chr5 132084072 132084072 1 + C A UCEC 132084068 + 132084048 132084088 41 TGCGACGCCTTCGAGGAAGTCGTGCTGTGGCTCCTGCGGCT TGCGACGCCTTCGAGGAAGTCGTGATGTGGCTCCTGCGGCT < 41bp 0.465692714669147 0.835526550056438 0.3547266 0.39981738 prediction 0.671053100112875 Functional Gain - CCNI2 ENSG00000205089 CDS Human protein_coding chr5:132084068 chr5:132084072 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_99884 0 0 0 0 3 CCNI2 chr5:132084036 3'AG 132084036 Downstream 37bp
chr5 132084072 132084072 1 + C A UCEC 132084068 + 132084048 132084088 41 TGCGACGCCTTCGAGGAAGTCGTGCTGTGGCTCCTGCGGCT TGCGACGCCTTCGAGGAAGTCGTGATGTGGCTCCTGCGGCT < 41bp 0.465692714669147 0.835526550056438 0.3547266 0.39981738 prediction 0.671053100112875 Functional Gain - CCNI2 ENSG00000205089 CDS Human protein_coding chr5:132084068 chr5:132084072 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_99884 0 0 0 0 3 CCNI2 chr5:132084039 3'AG 132084039 Downstream 34bp
chr5 132084072 132084072 1 + C A UCEC 132084068 + 132084048 132084088 41 TGCGACGCCTTCGAGGAAGTCGTGCTGTGGCTCCTGCGGCT TGCGACGCCTTCGAGGAAGTCGTGATGTGGCTCCTGCGGCT < 41bp 0.465692714669147 0.835526550056438 0.3547266 0.39981738 prediction 0.671053100112875 Functional Gain - CCNI2 ENSG00000205089 CDS Human protein_coding chr5:132084068 chr5:132084072 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_99884 0 0 0 0 3 CCNI2 chr5:132084167 5'GT 132084167 Upstream 96bp
chr10 102240874 102240874 1 + C A LUSC 102240870 + 102240850 102240890 41 GGCTGTGATGACTCCCGCAACGGGCAACTGGGTGAGTAGTA GGCTGTGATGACTCCCGCAACGGGAAACTGGGTGAGTAGTA < 41bp 0.537312172621911 0.872753288866824 0.30965805 0.6118831 prediction 0.670882232489827 Functional Gain - WNT8B ENSG00000075290 CDS Human protein_coding chr10:102240870 chr10:102240874 nonsynonymous SNV 0.993 1 25 hm5C_associated_SNPs_99888 0 0 0 0 1 WNT8B chr10:102240880 5'GT 102240880 Upstream 7bp
chr1 19584431 19584431 1 + T G GBM 19584428 + 19584408 19584448 41 CCTGGAGCAGTTCCCCCACTCCATGGAGCCACAGCTCAGGC CCTGGAGCAGTTCCCCCACTCCAGGGAGCCACAGCTCAGGC < 41bp 0.475045952374579 0.835407262446717 0.25430298 0.72615004 prediction 0.670814524893434 Functional Gain - MRTO4 ENSG00000053372 CDS Human protein_coding chr1:19584428 chr1:19584431 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_99890 0 0 1 0 1 MRTO4 chr1:19584478 5'GT 19584478 Upstream 48bp
chr17 61622463 61622463 1 + C A rs148464755 61622459 + 61622439 61622479 41 GCTGGAGTCCCGCGTGTCCTCAGACCTCAGCCGCATCTTGC GCTGGAGTCCCGCGTGTCCTCAGAACTCAGCCGCATCTTGC < 41bp 0.529969385005501 0.865353708897088 0.8827081 0.8792374 prediction 0.670768647783174 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61622459 chr17:61622463 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_99891 0 0 0 0 1 KCNH6 chr17:61622439 3'AG 61622439 Downstream 25bp
chr7 31146205 31146205 1 + T G SKCM 31146202 + 31146182 31146222 41 CGACACCCGTCTCTGGCCAGCAGTGGGGTGAATGGGGGCAC CGACACCCGTCTCTGGCCAGCAGGGGGGTGAATGGGGGCAC < 41bp 0.479306791869397 0.835307954540046 0.5857969 0.9304689 prediction 0.670615909080091 Functional Gain - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31146202 chr7:31146205 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_99893 0 0 0 0 1 ADCYAP1R1 chr7:31146110 3'AG 31146110 Downstream 96bp
chr4 57883766 57883766 1 + C A OV 57883762 + 57883742 57883782 41 ACCAGTCTGCTATGGGTAAGCAGGCTATGGGAGTTTACATC ACCAGTCTGCTATGGGTAAGCAGGATATGGGAGTTTACATC < 41bp 0.514186562713759 0.84941390865554 0.5100535 0.6422916 prediction 0.670454691883563 Functional Gain - POLR2B ENSG00000047315 CDS Human protein_coding chr4:57883762 chr4:57883766 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_99897 0 0 1 0 1 POLR2B chr4:57883726 3'AG 57883726 Downstream 41bp
chr13 88327723 88327723 1 + C A THYM 88327719 + 88327699 88327739 41 ATAGCTGGATGCTGCAGACTCTAGCGTTTGCTGTAACATCT ATAGCTGGATGCTGCAGACTCTAGAGTTTGCTGTAACATCT < 41bp 0.475102870445354 0.835105582141469 0.21459147 0.21919945 prediction 0.670211164282938 Functional Gain - SLITRK5 ENSG00000165300 CDS Human protein_coding chr13:88327719 chr13:88327723 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_99900 0 0 1 0 1 SLITRK5 chr13:88327636 3'AG 88327636 Downstream 88bp
chr12 113875787 113875787 1 + C A COAD 113875783 + 113875763 113875803 41 GGCTCCAGGCCGAGGGCTGCCTGCCCCCTTCCCTGACTTCA GGCTCCAGGCCGAGGGCTGCCTGCACCCTTCCCTGACTTCA < 41bp 0.541290140175846 0.876379128040515 0.06316638 0.08802119 prediction 0.670177975729337 Functional Gain - SDSL ENSG00000139410 CDS Human protein_coding chr12:113875783 chr12:113875787 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_99901 0 0 1 0 1 SDSL chr12:113875691 3'AG 113875691 Downstream 97bp
chr19 34984527 34984527 1 + C A KIRC 34984523 + 34984503 34984543 41 TCTACTGCGTGCGAGACTATCACACGTGAGTTGCTGGTGCT TCTACTGCGTGCGAGACTATCACAAGTGAGTTGCTGGTGCT < 41bp 0.458027607880579 0.835068032141312 0.19867298 0.27988723 prediction 0.670136064282624 Functional Gain - WTIP ENSG00000142279 CDS Human protein_coding chr19:34984523 chr19:34984527 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_99903 0 0 1 0 1 WTIP chr19:34984527 5'GT 34984527 Upstream 1bp
chr5 68555712 68555712 1 + C A LIHC 68555708 + 68555688 68555728 41 TAAAACTGGCAGATTTTGGCCTGGCCAAATCTTTTGGGAGC TAAAACTGGCAGATTTTGGCCTGGACAAATCTTTTGGGAGC < 41bp 0.463303797358275 0.835053981623791 0.36838096 0.44465965 prediction 0.670107963247581 Functional Gain - CDK7 ENSG00000134058 CDS Human protein_coding chr5:68555708 chr5:68555712 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99904 0 0 1 0 2 CDK7 chr5:68555645 3'AG 68555645 Downstream 68bp
chr5 68555712 68555712 1 + C A LIHC 68555708 + 68555688 68555728 41 TAAAACTGGCAGATTTTGGCCTGGCCAAATCTTTTGGGAGC TAAAACTGGCAGATTTTGGCCTGGACAAATCTTTTGGGAGC < 41bp 0.463303797358275 0.835053981623791 0.36838096 0.44465965 prediction 0.670107963247581 Functional Gain - CDK7 ENSG00000134058 CDS Human protein_coding chr5:68555708 chr5:68555712 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99904 0 0 1 0 2 CDK7 chr5:68555763 5'GT 68555763 Upstream 52bp
chr1 22925343 22925343 1 + C A BLCA 22925339 + 22925319 22925359 41 GTCCCCCTGCAGACCCACGACGGGCAGTTCACCATCATGCA GTCCCCCTGCAGACCCACGACGGGAAGTTCACCATCATGCA < 41bp 0.465501770338336 0.835047663157361 0.34010088 0.50294423 prediction 0.670095326314722 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22925339 chr1:22925343 nonsynonymous SNV 0.985 3 25 hm5C_associated_SNPs_99905 0 0 0 0 1 EPHA8 chr1:22925331 3'AG 22925331 Downstream 13bp
chr7 76121568 76121568 1 + C A LUAD 76121564 + 76121544 76121584 41 CCAGCAGAGTCCAGCAGGCGCTCGCAGGTAGGTGCCTGACC CCAGCAGAGTCCAGCAGGCGCTCGAAGGTAGGTGCCTGACC < 41bp 0.450538917139697 0.834906018618266 0.45867804 0.67071694 prediction 0.669812037236532 Functional Gain - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76121564 chr7:76121568 nonsynonymous SNV 0.840 3 25 hm5C_associated_SNPs_99912 0 0 1 0 2 DTX2 chr7:76121470 3'AG 76121470 Downstream 99bp
chr7 76121568 76121568 1 + C A LUAD 76121564 + 76121544 76121584 41 CCAGCAGAGTCCAGCAGGCGCTCGCAGGTAGGTGCCTGACC CCAGCAGAGTCCAGCAGGCGCTCGAAGGTAGGTGCCTGACC < 41bp 0.450538917139697 0.834906018618266 0.45867804 0.67071694 prediction 0.669812037236532 Functional Gain - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76121564 chr7:76121568 nonsynonymous SNV 0.840 3 25 hm5C_associated_SNPs_99912 0 0 1 0 2 DTX2 chr7:76121570 5'GT 76121570 Upstream 3bp
chr11 75508318 75508318 1 + C A CESC 75508314 + 75508294 75508334 41 TGAGTCTCTGAGCTCCATGCCTGGCAAGAATGCAGTCACCC TGAGTCTCTGAGCTCCATGCCTGGAAAGAATGCAGTCACCC < 41bp 0.44397526820818 0.834901191798307 0.13870248 0.25927496 prediction 0.669802383596614 Functional Gain - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75508314 chr11:75508318 synonymous SNV . 0 25 hm5C_associated_SNPs_99913 0 0 1 0 1 DGAT2 chr11:75508377 5'GT 75508377 Upstream 60bp
chr5 139218323 139218323 1 + C A LUAD 139218319 + 139218299 139218339 41 GCTCCATGAAGAAGTTCTGTCGGCCCCTGCTGCCCTCCTGC GCTCCATGAAGAAGTTCTGTCGGCACCTGCTGCCCTCCTGC < 41bp 0.529899706921223 0.864799104792893 0.40344018 0.44664684 prediction 0.669798795743339 Functional Gain - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139218319 chr5:139218323 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_99914 0 0 0 0 1 PSD2 chr5:139218357 5'GT 139218357 Upstream 35bp
chr19 50200612 50200612 1 + C A KIRP 50200608 + 50200588 50200628 41 CTTTCTCACCGGTGTGTTTCCTGCCAGCCCCCTCAGTTGGC CTTTCTCACCGGTGTGTTTCCTGCAAGCCCCCTCAGTTGGC < 41bp 0.442683720334727 0.834873070289742 0.19568145 0.35663202 prediction 0.669746140579484 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50200608 chr19:50200612 synonymous SNV . 0 25 hm5C_associated_SNPs_99915 0 0 0 0 1 CPT1C chr19:50200583 3'AG 50200583 Downstream 30bp
chr17 45286872 45286872 1 + C A UCEC 45286868 + 45286848 45286888 41 TCCAGCCCCTGCACCAGCCCCTGCCCCAGCTCCTGAGGCTC TCCAGCCCCTGCACCAGCCCCTGCACCAGCTCCTGAGGCTC < 41bp 0.435374096230655 0.834844580530609 0.4427966 0.37338108 prediction 0.669689161061217 Functional Gain - MYL4 ENSG00000198336 CDS Human protein_coding chr17:45286868 chr17:45286872 synonymous SNV . 0 25 hm5C_associated_SNPs_99916 0 0 1 0 1 MYL4 chr17:45286923 5'GT 45286923 Upstream 52bp
chr1 235602123 235602123 1 + C A CHOL 235602119 + 235602099 235602139 41 AGGCGGAGAGCTGAGCTTGACTACCGAAAAGCTTTTGGAAA AGGCGGAGAGCTGAGCTTGACTACAGAAAAGCTTTTGGAAA < 41bp 0.443844065579449 0.83478792111227 0.12218943 0.84118044 prediction 0.66957584222454 Functional Gain - TBCE ENSG00000116957 CDS Human protein_coding chr1:235602119 chr1:235602123 synonymous SNV . 0 25 hm5C_associated_SNPs_99918 0 0 1 0 1 TBCE chr1:235602084 3'AG 235602084 Downstream 40bp
chr15 89659617 89659617 1 + C A UCEC 89659613 + 89659593 89659633 41 CCGTGTTTGATGGAGTGAAGCTGGCTGCAGTGGCTGCTGTG CCGTGTTTGATGGAGTGAAGCTGGATGCAGTGGCTGCTGTG < 41bp 0.533000096222617 0.867787639533681 0.8043175 0.8911996 prediction 0.669575086622129 Functional Gain - ABHD2 ENSG00000140526 CDS Human protein_coding chr15:89659613 chr15:89659617 nonsynonymous SNV 0.959 4 25 hm5C_associated_SNPs_99919 0 0 1 2 1 ABHD2 chr15:89659553 3'AG 89659553 Downstream 65bp
chr19 808631 808631 1 + C A rs1058275 808627 + 808607 808647 41 GCACCAGAACGTGCAGCTGCCCCGCGAGGGCCAGGAGGACC GCACCAGAACGTGCAGCTGCCCCGAGAGGGCCAGGAGGACC < 41bp 0.44981549917649 0.834756055687607 0.05182013 0.05103472 prediction 0.669512111375213 Functional Gain - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:808627 chr19:808631 synonymous SNV . 0 25 hm5C_associated_SNPs_99920 0 0 1 0 1 PTBP1 chr19:808546 3'AG 808546 Downstream 86bp
chr16 23695329 23695329 1 + C A COAD 23695325 + 23695305 23695345 41 CCTGCCCGTCTCCCCATCACCTGCCTGACCATTCCACCAAG CCTGCCCGTCTCCCCATCACCTGCATGACCATTCCACCAAG < 41bp 0.560987883697371 0.89571787758277 0.16734442 0.31427133 prediction 0.669459987770798 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23695325 chr16:23695329 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_99923 0 0 1 0 1 PLK1 chr16:23695410 5'GT 23695410 Upstream 82bp
chr20 44330779 44330779 1 + C A UCEC 44330775 + 44330755 44330795 41 CTGACACCATGAAGCCTGTGCTGCCTCTCCAGTTCCTGGTG CTGACACCATGAAGCCTGTGCTGCATCTCCAGTTCCTGGTG < 41bp 0.477090415936285 0.834716770181449 0.014283717 0.0344249 prediction 0.669433540362899 Functional Gain - WFDC13 ENSG00000168634 CDS Human protein_coding chr20:44330775 chr20:44330779 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_99924 0 0 0 0 1 WFDC13 chr20:44330850 5'GT 44330850 Upstream 72bp
chr11 34982013 34982013 1 + C A rs139052284 34982009 + 34981989 34982029 41 CGCAATATTCTGGAAAAACACTCACTGGATGCTAGCCAGGG CGCAATATTCTGGAAAAACACTCAATGGATGCTAGCCAGGG < 41bp 0.43384091854191 0.8346142323612 0.033336908 0.3219275 prediction 0.6692284647224 Functional Gain - PDHX ENSG00000110435 CDS Human protein_coding chr11:34982009 chr11:34982013 nonsynonymous SNV 0.320 3 25 hm5C_associated_SNPs_99926 1 0 1 0 1 PDHX chr11:34981967 3'AG 34981967 Downstream 47bp
chr22 32439311 32439311 1 + C A LUAD 32439307 + 32439287 32439327 41 AGCCCCAAGACCACCGCGGTCACCCGGCCTGTTGAGACCCA AGCCCCAAGACCACCGCGGTCACCAGGCCTGTTGAGACCCA < 41bp 0.452358643591526 0.834584484603865 0.33189154 0.5642046 prediction 0.669168969207729 Functional Gain - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32439307 chr22:32439311 synonymous SNV . 0 25 hm5C_associated_SNPs_99927 0 0 0 0 1 SLC5A1 chr22:32439403 5'GT 32439403 Upstream 93bp
chr11 60777058 60777058 1 + C A LUAD 60777054 + 60777034 60777074 41 TTCCCTGCAGAGCACCAGTCCTGGCGCCTGACAGGGGGCGC TTCCCTGCAGAGCACCAGTCCTGGAGCCTGACAGGGGGCGC < 41bp 0.47525778041285 0.834575934566999 0.5389225 0.36534953 prediction 0.669151869133998 Functional Gain - CD6 ENSG00000013725 CDS Human protein_coding chr11:60777054 chr11:60777058 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99928 0 0 0 0 1 CD6 chr11:60777044 3'AG 60777044 Downstream 15bp
chr16 3188486 3188486 1 + C A rs151044233 3188482 + 3188462 3188502 41 GATCCCAGGCCACGGGGCCTCCCCCGACGGTGGGGGCACGG GATCCCAGGCCACGGGGCCTCCCCAGACGGTGGGGGCACGG < 41bp 0.482515075327254 0.834564351098021 0.21439397 0.23505396 prediction 0.669128702196042 Functional Gain - ZNF213 ENSG00000085644 CDS Human protein_coding chr16:3188482 chr16:3188486 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_99929 0 0 0 0 2 ZNF213 chr16:3188419 3'AG 3188419 Downstream 68bp
chr16 3188486 3188486 1 + C A rs151044233 3188482 + 3188462 3188502 41 GATCCCAGGCCACGGGGCCTCCCCCGACGGTGGGGGCACGG GATCCCAGGCCACGGGGCCTCCCCAGACGGTGGGGGCACGG < 41bp 0.482515075327254 0.834564351098021 0.21439397 0.23505396 prediction 0.669128702196042 Functional Gain - ZNF213 ENSG00000085644 CDS Human protein_coding chr16:3188482 chr16:3188486 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_99929 0 0 0 0 2 ZNF213 chr16:3188542 5'GT 3188542 Upstream 57bp
chr11 60702171 60702171 1 + C A rs140313442 60702167 + 60702147 60702187 41 CCACACGCCCGCGTGCTGGACTCGCGTGTAGCCTCTCTGGA CCACACGCCCGCGTGCTGGACTCGAGTGTAGCCTCTCTGGA < 41bp 0.475938483094124 0.834544720206952 0.37394422 0.8125753 prediction 0.669089440413904 Functional Gain - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60702167 chr11:60702171 nonsynonymous SNV 0.090 3 25 hm5C_associated_SNPs_99930 0 0 1 0 1 TMEM132A chr11:60702236 5'GT 60702236 Upstream 66bp
chr17 45363775 45363775 1 + C A LUAD 45363771 + 45363751 45363791 41 GTGGCTTTGATGCCATCATGCAGGCTACAGTCTGTGATGTG GTGGCTTTGATGCCATCATGCAGGATACAGTCTGTGATGTG < 41bp 0.533231326797052 0.867760196080734 0.38116723 0.34639454 prediction 0.669057738567365 Functional Gain - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45363771 chr17:45363775 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_99931 0 0 0 0 1 ITGB3 chr17:45363788 5'GT 45363788 Upstream 14bp
chr15 101434212 101434212 1 + T G HNSC 101434209 + 101434189 101434229 41 AAGCTGGCACCCGCCCTCTGCTGTGGGAACACCATGGTCCT AAGCTGGCACCCGCCCTCTGCTGGGGGAACACCATGGTCCT < 41bp 0.53361778320157 0.868031149131592 0.18707103 0.8876755 prediction 0.668826731860043 Functional Gain - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101434209 chr15:101434212 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_99934 0 0 0 0 2 ALDH1A3 chr15:101434159 3'AG 101434159 Downstream 54bp
chr15 101434212 101434212 1 + T G HNSC 101434209 + 101434189 101434229 41 AAGCTGGCACCCGCCCTCTGCTGTGGGAACACCATGGTCCT AAGCTGGCACCCGCCCTCTGCTGGGGGAACACCATGGTCCT < 41bp 0.53361778320157 0.868031149131592 0.18707103 0.8876755 prediction 0.668826731860043 Functional Gain - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101434209 chr15:101434212 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_99934 0 0 0 0 2 ALDH1A3 chr15:101434287 5'GT 101434287 Upstream 76bp
chr20 36932694 36932694 1 + C A LUAD 36932690 + 36932670 36932710 41 GGTGCTGGTCGCCATAGGCACCGCCGTGACAGCGGCCGTCA GGTGCTGGTCGCCATAGGCACCGCAGTGACAGCGGCCGTCA < 41bp 0.470318789973305 0.834271842198786 0.19370362 0.16659245 prediction 0.668543684397572 Functional Gain - BPI ENSG00000101425 CDS Human protein_coding chr20:36932690 chr20:36932694 synonymous SNV . 0 25 hm5C_associated_SNPs_99936 0 0 0 0 1 BPI chr20:36932755 5'GT 36932755 Upstream 62bp
chr19 19307776 19307776 1 + C A GBM 19307772 + 19307752 19307792 41 GCCTGTTGTCTGTTTCCCAGCAGGCAGCTCCCTGAAGCACT GCCTGTTGTCTGTTTCCCAGCAGGAAGCTCCCTGAAGCACT < 41bp 0.480660125134651 0.834245008065528 0.29908034 0.3422016 prediction 0.668490016131056 Functional Gain - RFXANK ENSG00000064490 CDS Human protein_coding chr19:19307772 chr19:19307776 synonymous SNV . 0 25 hm5C_associated_SNPs_99937 0 0 1 0 3 RFXANK chr19:19307772 3'AG 19307772 Downstream 5bp
chr19 19307776 19307776 1 + C A GBM 19307772 + 19307752 19307792 41 GCCTGTTGTCTGTTTCCCAGCAGGCAGCTCCCTGAAGCACT GCCTGTTGTCTGTTTCCCAGCAGGAAGCTCCCTGAAGCACT < 41bp 0.480660125134651 0.834245008065528 0.29908034 0.3422016 prediction 0.668490016131056 Functional Gain - RFXANK ENSG00000064490 CDS Human protein_coding chr19:19307772 chr19:19307776 synonymous SNV . 0 25 hm5C_associated_SNPs_99937 0 0 1 0 3 RFXANK chr19:19307775 3'AG 19307775 Downstream 2bp
chr19 19307776 19307776 1 + C A GBM 19307772 + 19307752 19307792 41 GCCTGTTGTCTGTTTCCCAGCAGGCAGCTCCCTGAAGCACT GCCTGTTGTCTGTTTCCCAGCAGGAAGCTCCCTGAAGCACT < 41bp 0.480660125134651 0.834245008065528 0.29908034 0.3422016 prediction 0.668490016131056 Functional Gain - RFXANK ENSG00000064490 CDS Human protein_coding chr19:19307772 chr19:19307776 synonymous SNV . 0 25 hm5C_associated_SNPs_99937 0 0 1 0 3 RFXANK chr19:19307855 5'GT 19307855 Upstream 80bp
chr19 18976564 18976564 1 + C A COAD 18976560 + 18976540 18976580 41 CCTTCCCAGATGAGCCAGCCCGGCCTCTCCCAGCCGGAGCT CCTTCCCAGATGAGCCAGCCCGGCATCTCCCAGCCGGAGCT < 41bp 0.461381962954991 0.834216149943693 0.12876049 0.3570842 prediction 0.668432299887386 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18976560 chr19:18976564 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99939 0 0 1 0 1 UPF1 chr19:18976587 5'GT 18976587 Upstream 24bp
chr20 43034742 43034742 1 + C A BLCA 43034738 + 43034718 43034758 41 ACCAACCTCAACGCGCCCAACAGCCTGGGTGTCAGCGCCCT ACCAACCTCAACGCGCCCAACAGCATGGGTGTCAGCGCCCT < 41bp 0.548169354689762 0.882376946029505 0.3893657 0.60196793 prediction 0.668415182679486 Functional Gain - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43034738 chr20:43034742 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_99940 0 0 0 0 1 HNF4A chr20:43034698 3'AG 43034698 Downstream 45bp
chr1 246929399 246929399 1 + C A GBM 246929395 + 246929375 246929415 41 CTACCCCCATAGCTATGGTTCAGGCAGCCATGACTCTTCTA CTACCCCCATAGCTATGGTTCAGGAAGCCATGACTCTTCTA < 41bp 0.468917325456559 0.834195306610977 0.21542445 0.37167907 prediction 0.668390613221954 Functional Gain - SCCPDH ENSG00000143653 CDS Human protein_coding chr1:246929395 chr1:246929399 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_99943 0 0 1 0 2 SCCPDH chr1:246929360 3'AG 246929360 Downstream 40bp
chr1 246929399 246929399 1 + C A GBM 246929395 + 246929375 246929415 41 CTACCCCCATAGCTATGGTTCAGGCAGCCATGACTCTTCTA CTACCCCCATAGCTATGGTTCAGGAAGCCATGACTCTTCTA < 41bp 0.468917325456559 0.834195306610977 0.21542445 0.37167907 prediction 0.668390613221954 Functional Gain - SCCPDH ENSG00000143653 CDS Human protein_coding chr1:246929395 chr1:246929399 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_99943 0 0 1 0 2 SCCPDH chr1:246929441 5'GT 246929441 Upstream 43bp
chr6 31541186 31541186 1 + C A SKCM 31541182 + 31541162 31541202 41 AGTGGCATCTACTTCGTCTACTCCCAGGTGGTCTTCTCTGG AGTGGCATCTACTTCGTCTACTCCAAGGTGGTCTTCTCTGG < 41bp 0.500925313123826 0.835113218620768 0.04031807 0.9462092 prediction 0.668375810993883 Functional Gain - LTA ENSG00000226979 CDS Human protein_coding chr6:31541182 chr6:31541186 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_99944 0 0 0 0 1 LTA chr6:31541188 5'GT 31541188 Upstream 3bp
chr20 61296367 61296367 1 + C A rs148710404 61296363 + 61296343 61296383 41 CACCGAGGCCACTCTCATCACCGGCATGTCCACGTTCAGCC CACCGAGGCCACTCTCATCACCGGAATGTCCACGTTCAGCC < 41bp 0.452762461378176 0.834125267794918 0.025272995 0.09222722 prediction 0.668250535589836 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61296363 chr20:61296367 synonymous SNV . 0 25 hm5C_associated_SNPs_99947 0 0 1 0 2 SLCO4A1 chr20:61296286 3'AG 61296286 Downstream 82bp
chr20 61296367 61296367 1 + C A rs148710404 61296363 + 61296343 61296383 41 CACCGAGGCCACTCTCATCACCGGCATGTCCACGTTCAGCC CACCGAGGCCACTCTCATCACCGGAATGTCCACGTTCAGCC < 41bp 0.452762461378176 0.834125267794918 0.025272995 0.09222722 prediction 0.668250535589836 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61296363 chr20:61296367 synonymous SNV . 0 25 hm5C_associated_SNPs_99947 0 0 1 0 2 SLCO4A1 chr20:61296440 5'GT 61296440 Upstream 74bp
chr12 6426535 6426535 1 + C A COAD 6426531 + 6426511 6426551 41 GTGAAGCAGACCATGGCTTACGCCCGAGAACAGCAAGAAAC GTGAAGCAGACCATGGCTTACGCCAGAGAACAGCAAGAAAC < 41bp 0.433785384953461 0.834116935074086 0.05391437 0.13727236 prediction 0.668233870148172 Functional Gain - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6426531 chr12:6426535 synonymous SNV . 0 25 hm5C_associated_SNPs_99948 0 0 0 0 2 PLEKHG6 chr12:6426469 3'AG 6426469 Downstream 67bp
chr12 6426535 6426535 1 + C A COAD 6426531 + 6426511 6426551 41 GTGAAGCAGACCATGGCTTACGCCCGAGAACAGCAAGAAAC GTGAAGCAGACCATGGCTTACGCCAGAGAACAGCAAGAAAC < 41bp 0.433785384953461 0.834116935074086 0.05391437 0.13727236 prediction 0.668233870148172 Functional Gain - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6426531 chr12:6426535 synonymous SNV . 0 25 hm5C_associated_SNPs_99948 0 0 0 0 2 PLEKHG6 chr12:6426579 5'GT 6426579 Upstream 45bp
chr1 18149557 18149557 1 + C A LUSC 18149553 + 18149533 18149573 41 CGGGTCTGGCTTTTTGAAGGCTGGCACGGCCGGCTGGAATG CGGGTCTGGCTTTTTGAAGGCTGGAACGGCCGGCTGGAATG < 41bp 0.466751550621214 0.834079399778179 0.13583362 0.28867662 prediction 0.668158799556358 Functional Gain - ACTL8 ENSG00000117148 CDS Human protein_coding chr1:18149553 chr1:18149557 synonymous SNV . 0 25 hm5C_associated_SNPs_99951 0 0 0 0 1 ACTL8 chr1:18149480 3'AG 18149480 Downstream 78bp
chr19 7680162 7680162 1 + C A UCEC 7680158 + 7680138 7680178 41 GCAGAGGAGGCGCGGCGGCGCAAGCAGTGGCAGGAGGTGGA GCAGAGGAGGCGCGGCGGCGCAAGAAGTGGCAGGAGGTGGA < 41bp 0.527723533673488 0.861799749530182 0.66265506 0.75788575 prediction 0.668152431713388 Functional Gain - CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7680158 chr19:7680162 nonsynonymous SNV 0.160 2 25 hm5C_associated_SNPs_99952 0 0 1 0 2 CAMSAP3 chr19:7680069 3'AG 7680069 Downstream 94bp
chr19 7680162 7680162 1 + C A UCEC 7680158 + 7680138 7680178 41 GCAGAGGAGGCGCGGCGGCGCAAGCAGTGGCAGGAGGTGGA GCAGAGGAGGCGCGGCGGCGCAAGAAGTGGCAGGAGGTGGA < 41bp 0.527723533673488 0.861799749530182 0.66265506 0.75788575 prediction 0.668152431713388 Functional Gain - CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7680158 chr19:7680162 nonsynonymous SNV 0.160 2 25 hm5C_associated_SNPs_99952 0 0 1 0 2 CAMSAP3 chr19:7680208 5'GT 7680208 Upstream 47bp
chr20 31672780 31672780 1 + C A LUAD 31672776 + 31672756 31672796 41 GGTGTCTACCTGAGCTTGTACACCCGTGTGGCCATCAACGG GGTGTCTACCTGAGCTTGTACACCAGTGTGGCCATCAACGG < 41bp 0.549999346426461 0.88406339496462 0.06629977 0.13261405 prediction 0.668128097076318 Functional Gain - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31672776 chr20:31672780 nonsynonymous SNV 0.866 0 25 hm5C_associated_SNPs_99953 0 0 0 0 2 BPIFB4 chr20:31672698 3'AG 31672698 Downstream 83bp
chr20 31672780 31672780 1 + C A LUAD 31672776 + 31672756 31672796 41 GGTGTCTACCTGAGCTTGTACACCCGTGTGGCCATCAACGG GGTGTCTACCTGAGCTTGTACACCAGTGTGGCCATCAACGG < 41bp 0.549999346426461 0.88406339496462 0.06629977 0.13261405 prediction 0.668128097076318 Functional Gain - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31672776 chr20:31672780 nonsynonymous SNV 0.866 0 25 hm5C_associated_SNPs_99953 0 0 0 0 2 BPIFB4 chr20:31672802 5'GT 31672802 Upstream 23bp
chr4 38910299 38910299 1 + C A CESC 38910295 + 38910275 38910315 41 TGTCCTTGCAGAAAGTGACCCGGGCTTTAAGCGGACCAAGA TGTCCTTGCAGAAAGTGACCCGGGATTTAAGCGGACCAAGA < 41bp 0.460644844876542 0.834047284269441 0.8895869 0.8908387 prediction 0.668094568538882 Functional Gain - FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38910295 chr4:38910299 synonymous SNV . 0 25 hm5C_associated_SNPs_99954 0 0 0 0 1 FAM114A1 chr4:38910347 5'GT 38910347 Upstream 49bp
chr9 136402577 136402577 1 + C A SKCM 136402573 + 136402553 136402593 41 GGAGGGGGGCACCGACGCCACGGCCTTCTGGTGGGGGGAGT GGAGGGGGGCACCGACGCCACGGCATTCTGGTGGGGGGAGT < 41bp 0.545335601323771 0.879368515190524 0.15053913 0.14366677 prediction 0.668065827733506 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136402573 chr9:136402577 synonymous SNV . 0 25 hm5C_associated_SNPs_99956 0 0 0 0 2 ADAMTSL2 chr9:136402527 3'AG 136402527 Downstream 51bp
chr9 136402577 136402577 1 + C A SKCM 136402573 + 136402553 136402593 41 GGAGGGGGGCACCGACGCCACGGCCTTCTGGTGGGGGGAGT GGAGGGGGGCACCGACGCCACGGCATTCTGGTGGGGGGAGT < 41bp 0.545335601323771 0.879368515190524 0.15053913 0.14366677 prediction 0.668065827733506 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136402573 chr9:136402577 synonymous SNV . 0 25 hm5C_associated_SNPs_99956 0 0 0 0 2 ADAMTSL2 chr9:136402669 5'GT 136402669 Upstream 93bp
chr6 26505209 26505209 1 + C A UCEC 26505205 + 26505185 26505225 41 GTTCAAGAGAATGGAGAAATCTGTCTGGAGTGCACCTCAGT GTTCAAGAGAATGGAGAAATCTGTATGGAGTGCACCTCAGT < 41bp 0.459183191965561 0.83403167372386 0.2556857 0.4091217 prediction 0.66806334744772 Functional Gain - BTN1A1 ENSG00000124557 CDS Human protein_coding chr6:26505205 chr6:26505209 nonsynonymous SNV 0.487 4 25 hm5C_associated_SNPs_99957 0 0 0 0 1 BTN1A1 chr6:26505153 3'AG 26505153 Downstream 57bp
chr2 32445354 32445354 1 + C A UCEC 32445350 + 32445330 32445370 41 GTTCTTGCTCATGTGACCAACAGGCTGTACACTCTAGTGTC GTTCTTGCTCATGTGACCAACAGGATGTACACTCTAGTGTC < 41bp 0.515011184548874 0.849021516067969 0.17003804 0.3601601 prediction 0.668020663038192 Functional Gain - SLC30A6 ENSG00000152683 CDS Human protein_coding chr2:32445350 chr2:32445354 nonsynonymous SNV 0.943 4 25 hm5C_associated_SNPs_99960 0 0 1 0 1 SLC30A6 chr2:32445282 3'AG 32445282 Downstream 73bp
chr19 36207093 36207093 1 + C A rs570044531 36207089 + 36207069 36207109 41 GGCAGGCTGCCCACCTCGCCCGCACCCTCCCCCGGCCCCTC GGCAGGCTGCCCACCTCGCCCGCAACCTCCCCCGGCCCCTC < 41bp 0.465498568523228 0.833995678592761 0.093909234 0.17491972 prediction 0.667991357185523 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36207089 chr19:36207093 nonsynonymous SNV 0.075 0 25 hm5C_associated_SNPs_99961 0 0 0 0 1 ZBTB32 chr19:36207035 3'AG 36207035 Downstream 59bp
chr17 40765685 40765685 1 + C A COAD 40765681 + 40765661 40765701 41 CCAGGTGGTGCTGGACAACACAGCCCTGAACCGGATTGCCA CCAGGTGGTGCTGGACAACACAGCACTGAACCGGATTGCCA < 41bp 0.450550900283707 0.83398571393479 0.14017758 0.39370164 prediction 0.66797142786958 Functional Gain - TUBG1 ENSG00000131462 CDS Human protein_coding chr17:40765681 chr17:40765685 synonymous SNV . 0 25 hm5C_associated_SNPs_99962 0 0 0 0 2 TUBG1 chr17:40765665 3'AG 40765665 Downstream 21bp
chr17 40765685 40765685 1 + C A COAD 40765681 + 40765661 40765701 41 CCAGGTGGTGCTGGACAACACAGCCCTGAACCGGATTGCCA CCAGGTGGTGCTGGACAACACAGCACTGAACCGGATTGCCA < 41bp 0.450550900283707 0.83398571393479 0.14017758 0.39370164 prediction 0.66797142786958 Functional Gain - TUBG1 ENSG00000131462 CDS Human protein_coding chr17:40765681 chr17:40765685 synonymous SNV . 0 25 hm5C_associated_SNPs_99962 0 0 0 0 2 TUBG1 chr17:40765751 5'GT 40765751 Upstream 67bp
chr1 176668278 176668278 1 + C A LUAD 176668274 + 176668254 176668294 41 AGCCCTGCGAGCCAAGCTTACAGGCCTGGAGCCCTGAGGTC AGCCCTGCGAGCCAAGCTTACAGGACTGGAGCCCTGAGGTC < 41bp 0.495602818428084 0.833877177298457 0.8365079 0.8402385 prediction 0.667754354596914 Functional Gain - PAPPA2 ENSG00000116183 CDS Human protein_coding chr1:176668274 chr1:176668278 nonsynonymous SNV 0.990 2 25 hm5C_associated_SNPs_99966 0 0 0 0 1 PAPPA2 chr1:176668236 3'AG 176668236 Downstream 43bp
chr11 5011017 5011017 1 + C A LUSC 5011013 + 5010993 5011033 41 AGATGCATGCTCTGCTACACCAGCCCCACTGTGGGGTGCCT AGATGCATGCTCTGCTACACCAGCACCACTGTGGGGTGCCT < 41bp 0.547731972068252 0.881534190390101 0.092954665 0.20039418 prediction 0.667604436643698 Functional Gain - MMP26 ENSG00000167346 CDS Human protein_coding chr11:5011013 chr11:5011017 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_99967 0 0 0 0 1 MMP26 chr11:5011098 5'GT 5011098 Upstream 82bp
chr19 55085805 55085805 1 + C A KIRC 55085801 + 55085781 55085821 41 GCCCACCCTCTGGGCTGAGCCAGGCTCTGTGATCATCCAGG GCCCACCCTCTGGGCTGAGCCAGGATCTGTGATCATCCAGG < 41bp 0.524258754703052 0.858028714292814 0.29360622 0.47482112 prediction 0.667539919179524 Functional Gain - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55085801 chr19:55085805 synonymous SNV . 0 25 hm5C_associated_SNPs_99968 0 0 0 0 1 LILRA2 chr19:55085768 3'AG 55085768 Downstream 38bp
chr2 228110691 228110691 1 + C A rs115324397 228110687 + 228110667 228110707 41 CAGGGCACCCCAGGCAATACCGGGCCTTACGGACTTGTCGG CAGGGCACCCCAGGCAATACCGGGACTTACGGACTTGTCGG < 41bp 0.480185133906924 0.833754239970491 0.91859317 0.93261707 prediction 0.667508479940981 Functional Gain - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228110687 chr2:228110691 nonsynonymous SNV 0.009 4 25 hm5C_associated_SNPs_99970 1 0 0 0 2 COL4A3 chr2:228110670 3'AG 228110670 Downstream 22bp
chr2 228110691 228110691 1 + C A rs115324397 228110687 + 228110667 228110707 41 CAGGGCACCCCAGGCAATACCGGGCCTTACGGACTTGTCGG CAGGGCACCCCAGGCAATACCGGGACTTACGGACTTGTCGG < 41bp 0.480185133906924 0.833754239970491 0.91859317 0.93261707 prediction 0.667508479940981 Functional Gain - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228110687 chr2:228110691 nonsynonymous SNV 0.009 4 25 hm5C_associated_SNPs_99970 1 0 0 0 2 COL4A3 chr2:228110732 5'GT 228110732 Upstream 42bp
chr20 45702893 45702893 1 + C A KIRC 45702889 + 45702869 45702909 41 TACGTCCCGGCCAGCAGCATCTGCCCTTCGCCCCTCTCCAC TACGTCCCGGCCAGCAGCATCTGCACTTCGCCCCTCTCCAC < 41bp 0.44524100871676 0.833697228569574 0.038773656 0.05843991 prediction 0.667394457139148 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45702889 chr20:45702893 nonsynonymous SNV 0.961 1 25 hm5C_associated_SNPs_99971 0 0 0 0 2 EYA2 chr20:45702797 3'AG 45702797 Downstream 97bp
chr20 45702893 45702893 1 + C A KIRC 45702889 + 45702869 45702909 41 TACGTCCCGGCCAGCAGCATCTGCCCTTCGCCCCTCTCCAC TACGTCCCGGCCAGCAGCATCTGCACTTCGCCCCTCTCCAC < 41bp 0.44524100871676 0.833697228569574 0.038773656 0.05843991 prediction 0.667394457139148 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45702889 chr20:45702893 nonsynonymous SNV 0.961 1 25 hm5C_associated_SNPs_99971 0 0 0 0 2 EYA2 chr20:45702974 5'GT 45702974 Upstream 82bp
chr17 9503497 9503497 1 + T G UCEC 9503494 + 9503474 9503514 41 GGGCCTGCGAAGGACAAATTCAGTTTGGTGAGTAGAGACCA GGGCCTGCGAAGGACAAATTCAGGTTGGTGAGTAGAGACCA < 41bp 0.523138905128092 0.8568266433003 0.23703173 0.8220494 prediction 0.667375476344416 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9503494 chr17:9503497 nonsynonymous SNV 0.980 3 24 hm5C_associated_SNPs_99972 0 0 0 0 1 CFAP52 chr17:9503500 5'GT 9503500 Upstream 4bp
chr21 47406590 47406590 1 + C A rs61751027 47406586 + 47406566 47406606 41 AGTCTTCTCGGTGGCCATCACACCCGACCACCTGGTAGGCA AGTCTTCTCGGTGGCCATCACACCAGACCACCTGGTAGGCA < 41bp 0.444882924537978 0.833676714886424 0.4227972 0.72956157 prediction 0.667353429772848 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47406586 chr21:47406590 synonymous SNV . 0 25 hm5C_associated_SNPs_99973 0 0 0 0 1 COL6A1 chr21:47406599 5'GT 47406599 Upstream 10bp
chr9 133914549 133914549 1 + C A LUSC 133914545 + 133914525 133914565 41 ACACCTCCAGTGCGATGACACAGGCACCTGCGCCTGCAAGC ACACCTCCAGTGCGATGACACAGGAACCTGCGCCTGCAAGC < 41bp 0.47622887689168 0.833625157946981 0.80104333 0.8873086 prediction 0.667250315893962 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133914545 chr9:133914549 synonymous SNV . 0 25 hm5C_associated_SNPs_99976 0 0 0 0 2 LAMC3 chr9:133914518 3'AG 133914518 Downstream 32bp
chr9 133914549 133914549 1 + C A LUSC 133914545 + 133914525 133914565 41 ACACCTCCAGTGCGATGACACAGGCACCTGCGCCTGCAAGC ACACCTCCAGTGCGATGACACAGGAACCTGCGCCTGCAAGC < 41bp 0.47622887689168 0.833625157946981 0.80104333 0.8873086 prediction 0.667250315893962 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133914545 chr9:133914549 synonymous SNV . 0 25 hm5C_associated_SNPs_99976 0 0 0 0 2 LAMC3 chr9:133914635 5'GT 133914635 Upstream 87bp
chr2 203242237 203242237 1 + C A GBM 203242233 + 203242213 203242253 41 CAGCGGCCCTGGCGGGTGCCCTGGCTACCATGGACCATCCT CAGCGGCCCTGGCGGGTGCCCTGGATACCATGGACCATCCT < 41bp 0.488524958186347 0.833618095064332 0.68893033 0.75324214 prediction 0.667236190128664 Functional Gain - BMPR2 ENSG00000204217 CDS Human protein_coding chr2:203242233 chr2:203242237 nonsynonymous SNV 0.864 1 25 hm5C_associated_SNPs_99977 0 0 1 0 1 BMPR2 chr2:203242273 5'GT 203242273 Upstream 37bp
chr10 72496543 72496543 1 + C A HNSC 72496539 + 72496519 72496559 41 GCTGGATGGGACTGAGTGTGCACCCGGCAAGGTACCTGTGG GCTGGATGGGACTGAGTGTGCACCAGGCAAGGTACCTGTGG < 41bp 0.452454662660895 0.833578938038631 0.19508469 0.16580102 prediction 0.667157876077263 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72496539 chr10:72496543 synonymous SNV . 0 25 hm5C_associated_SNPs_99979 0 0 1 0 1 ADAMTS14 chr10:72496549 5'GT 72496549 Upstream 7bp
chr2 223917596 223917596 1 + C A LUAD 223917592 + 223917572 223917612 41 CAGCACGCACCCCGGCACCGCCGCCTCCAGCAGCCCCCTGG CAGCACGCACCCCGGCACCGCCGCATCCAGCAGCCCCCTGG < 41bp 0.479814610248819 0.83353886882569 0.08269963 0.08076817 prediction 0.66707773765138 Functional Gain - KCNE4 ENSG00000152049 CDS Human protein_coding chr2:223917592 chr2:223917596 synonymous SNV . 0 25 hm5C_associated_SNPs_99982 0 0 0 0 1 KCNE4 chr2:223917526 3'AG 223917526 Downstream 71bp
chr1 46812740 46812740 1 + C A UCEC 46812736 + 46812716 46812756 41 GACACTAGCGTTGCTTCAGACTGGCTGTTGCCGTAAGTCAG GACACTAGCGTTGCTTCAGACTGGATGTTGCCGTAAGTCAG < 41bp 0.474742187494182 0.833481512493161 0.27939236 0.30346906 prediction 0.666963024986323 Functional Gain - NSUN4 ENSG00000117481 CDS Human protein_coding chr1:46812736 chr1:46812740 synonymous SNV . 0 25 hm5C_associated_SNPs_99983 0 0 1 0 1 NSUN4 chr1:46812747 5'GT 46812747 Upstream 8bp
chr10 99211577 99211577 1 + C A UCEC 99211573 + 99211553 99211593 41 TACGGCAAGGTCTGCCTGCGCTCCCTGCTCTACAACTCCTT TACGGCAAGGTCTGCCTGCGCTCCATGCTCTACAACTCCTT < 41bp 0.558876399761831 0.892321843318519 0.066299886 0.47411397 prediction 0.666890887113375 Functional Gain - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99211573 chr10:99211577 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_99984 0 0 1 0 1 ZDHHC16 chr10:99211675 5'GT 99211675 Upstream 99bp
chr9 35658621 35658621 1 + C A CESC 35658617 + 35658597 35658637 41 GAGCCACGGAACCCCGGCGGCGACCACCGCTCAAGGATCAA GAGCCACGGAACCCCGGCGGCGACAACCGCTCAAGGATCAA < 41bp 0.462995651824834 0.833418251669706 0.4677482 0.38573363 prediction 0.666836503339411 Functional Gain - CCDC107 ENSG00000159884 CDS Human protein_coding chr9:35658617 chr9:35658621 nonsynonymous SNV 0.097 1 25 hm5C_associated_SNPs_99985 0 0 0 0 1 CCDC107 chr9:35658573 3'AG 35658573 Downstream 49bp
chr10 106121816 106121816 1 + C A UCEC 106121812 + 106121792 106121832 41 GGCCTGGAAGATGGTGGACTCAGCCTATGACAAAGAGCAGA GGCCTGGAAGATGGTGGACTCAGCATATGACAAAGAGCAGA < 41bp 0.454753689541108 0.83336710101427 0.12354696 0.32572457 prediction 0.66673420202854 Functional Gain - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106121812 chr10:106121816 synonymous SNV . 0 25 hm5C_associated_SNPs_99987 0 0 0 0 1 CFAP58 chr10:106121781 3'AG 106121781 Downstream 36bp
chr3 183823571 183823571 1 + C A OV 183823567 + 183823547 183823587 41 CACCAGGTGGCCATCAGGCGCAGGCCCAGTCTCTATGTCAT CACCAGGTGGCCATCAGGCGCAGGACCAGTCTCTATGTCAT < 41bp 0.531703468316067 0.864987680608835 0.23057297 0.39158085 prediction 0.666568424585537 Functional Gain - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183823567 chr3:183823571 nonsynonymous SNV 0.953 4 25 hm5C_associated_SNPs_99989 0 0 0 0 1 HTR3E chr3:183823553 3'AG 183823553 Downstream 19bp
chr12 119592130 119592130 1 + C A PRAD 119592126 + 119592106 119592146 41 CGTCGGAGACGTCGGTCCTACTCGCCTATGAGAAAGCGCCG CGTCGGAGACGTCGGTCCTACTCGACTATGAGAAAGCGCCG < 41bp 0.445627121356165 0.833252181298826 0.16475639 0.37657362 prediction 0.666504362597652 Functional Gain - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119592126 chr12:119592130 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_99990 0 0 1 0 2 SRRM4 chr12:119592048 3'AG 119592048 Downstream 83bp
chr12 119592130 119592130 1 + C A PRAD 119592126 + 119592106 119592146 41 CGTCGGAGACGTCGGTCCTACTCGCCTATGAGAAAGCGCCG CGTCGGAGACGTCGGTCCTACTCGACTATGAGAAAGCGCCG < 41bp 0.445627121356165 0.833252181298826 0.16475639 0.37657362 prediction 0.666504362597652 Functional Gain - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119592126 chr12:119592130 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_99990 0 0 1 0 2 SRRM4 chr12:119592188 5'GT 119592188 Upstream 59bp
chr16 57449713 57449713 1 + C A SKCM 57449709 + 57449689 57449729 41 GCAGGGCAGGGCCATCTGTTCGGACCCCAACAACAAGAGAG GCAGGGCAGGGCCATCTGTTCGGAACCCAACAACAAGAGAG < 41bp 0.478751950497376 0.833213739681839 0.29726154 0.39300942 prediction 0.666427479363678 Functional Gain - CCL17 ENSG00000102970 CDS Human protein_coding chr16:57449709 chr16:57449713 nonsynonymous SNV 0.022 2 25 hm5C_associated_SNPs_99991 0 0 0 0 1 CCL17 chr16:57449677 3'AG 57449677 Downstream 37bp
chr11 125659320 125659320 1 + C A LIHC 125659316 + 125659296 125659336 41 AGTGCATAACATGCCACCTTCGCACACGGACAGACCGCTGT AGTGCATAACATGCCACCTTCGCAAACGGACAGACCGCTGT < 41bp 0.444469016945803 0.833178200910683 0.03824386 0.054451793 prediction 0.666356401821367 Functional Gain - PATE3 ENSG00000236027 CDS Human protein_coding chr11:125659316 chr11:125659320 nonsynonymous SNV 0.051 0 25 hm5C_associated_SNPs_99993 0 0 0 0 1 PATE3 chr11:125659281 3'AG 125659281 Downstream 40bp
chr7 100773845 100773845 1 + C A OV 100773841 + 100773821 100773861 41 GGCTTCATGCCCCACTTCTTCAGGCTGTTCCGGAGCACGGT GGCTTCATGCCCCACTTCTTCAGGATGTTCCGGAGCACGGT < 41bp 0.525302694567924 0.858357849960706 0.918661 0.9165516 prediction 0.666110310785565 Functional Gain - SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100773841 chr7:100773845 nonsynonymous SNV 0.932 3 25 hm5C_associated_SNPs_100000 0 0 1 0 1 SERPINE1 chr7:100773935 5'GT 100773935 Upstream 91bp
chr2 85531073 85531073 1 + C A THCA 85531069 + 85531049 85531089 41 GTCACCGTATTACCCACTCTCTCCCGGAGCTGTCGGACAAA GTCACCGTATTACCCACTCTCTCCAGGAGCTGTCGGACAAA < 41bp 0.420967600530684 0.832978397845454 0.42963204 0.95631623 prediction 0.665956795690908 Functional Gain - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85531069 chr2:85531073 synonymous SNV . 0 25 hm5C_associated_SNPs_100006 0 0 0 0 2 TCF7L1 chr2:85531018 3'AG 85531018 Downstream 56bp
chr2 85531073 85531073 1 + C A THCA 85531069 + 85531049 85531089 41 GTCACCGTATTACCCACTCTCTCCCGGAGCTGTCGGACAAA GTCACCGTATTACCCACTCTCTCCAGGAGCTGTCGGACAAA < 41bp 0.420967600530684 0.832978397845454 0.42963204 0.95631623 prediction 0.665956795690908 Functional Gain - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85531069 chr2:85531073 synonymous SNV . 0 25 hm5C_associated_SNPs_100006 0 0 0 0 2 TCF7L1 chr2:85531120 5'GT 85531120 Upstream 48bp
chr2 85532460 85532460 1 + C A COAD 85532456 + 85532436 85532476 41 TGCCCACCTCAGGGATCCCCCACCCTGCCATCGTCTCCCCC TGCCCACCTCAGGGATCCCCCACCATGCCATCGTCTCCCCC < 41bp 0.443482912189087 0.832869194135217 0.3396793 0.31773633 prediction 0.665738388270434 Functional Gain - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85532456 chr2:85532460 nonsynonymous SNV 0.965 4 25 hm5C_associated_SNPs_100010 0 0 0 0 2 TCF7L1 chr2:85532383 3'AG 85532383 Downstream 78bp
chr2 85532460 85532460 1 + C A COAD 85532456 + 85532436 85532476 41 TGCCCACCTCAGGGATCCCCCACCCTGCCATCGTCTCCCCC TGCCCACCTCAGGGATCCCCCACCATGCCATCGTCTCCCCC < 41bp 0.443482912189087 0.832869194135217 0.3396793 0.31773633 prediction 0.665738388270434 Functional Gain - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85532456 chr2:85532460 nonsynonymous SNV 0.965 4 25 hm5C_associated_SNPs_100010 0 0 0 0 2 TCF7L1 chr2:85532526 5'GT 85532526 Upstream 67bp
chrX 36254883 36254883 1 + C A COAD 36254879 + 36254859 36254899 41 AGGGGTTGGGAAAAAACCTTCGGCCTTGGAACACATCACTG AGGGGTTGGGAAAAAACCTTCGGCATTGGAACACATCACTG < 41bp 0.492810413225749 0.832854752784078 0.51344997 0.41552204 prediction 0.665709505568155 Functional Gain - CFAP47 ENSG00000205081 CDS Human other chrX:36254879 chrX:36254883 synonymous SNV . 0 25 hm5C_associated_SNPs_100011 0 0 0 0 1 CFAP47 chrX:36254976 5'GT 36254976 Upstream 94bp
chr12 27869255 27869255 1 + T G rs201903662 27869252 + 27869232 27869272 41 TCCTAGGACAGAGAAAATGGCTGTTGACCAGGACTGGCCTA TCCTAGGACAGAGAAAATGGCTGGTGACCAGGACTGGCCTA < 41bp 0.480054388949917 0.832806118875604 0.14534244 0.3111714 prediction 0.665612237751207 Functional Gain - MRPS35 ENSG00000061794 CDS Human protein_coding chr12:27869252 chr12:27869255 nonsynonymous SNV 0.989 1 24 hm5C_associated_SNPs_100012 0 0 1 0 1 MRPS35 chr12:27869224 3'AG 27869224 Downstream 32bp
chr4 184606530 184606530 1 + T G UCS 184606527 + 184606507 184606547 41 GGCTGGCAGCAATATTTTCACAATAGGAGTACAGGACTTTG GGCTGGCAGCAATATTTTCACAAGAGGAGTACAGGACTTTG < 41bp 0.511919772728099 0.844635909914272 0.16125241 0.7272385 prediction 0.665432274372345 Functional Gain - TRAPPC11 ENSG00000168538 CDS Human protein_coding chr4:184606527 chr4:184606530 nonsynonymous SNV 0.985 2 24 hm5C_associated_SNPs_100016 0 0 1 0 1 TRAPPC11 chr4:184606556 5'GT 184606556 Upstream 27bp
chrX 100646777 100646777 1 + T G CHOL 100646774 + 100646754 100646794 41 TATGACAGGAAGCAGAGTGGCTATGGTGGGCAAACTAAGCC TATGACAGGAAGCAGAGTGGCTAGGGTGGGCAAACTAAGCC < 41bp 0.489417752024282 0.832672502944177 0.34273535 0.68723655 prediction 0.665345005888355 Functional Gain - RPL36A;RPL36A-HNRNPH2 ENSG00000241343;ENSG00000257529 CDS Human other chrX:100646774 chrX:100646777 stopgain 1.000 0 24 hm5C_associated_SNPs_100018 0 0 1 0 2 RPL36A;RPL36A-HNRNPH2 chrX:100646743 3'AG 100646743 Downstream 35bp
chrX 100646777 100646777 1 + T G CHOL 100646774 + 100646754 100646794 41 TATGACAGGAAGCAGAGTGGCTATGGTGGGCAAACTAAGCC TATGACAGGAAGCAGAGTGGCTAGGGTGGGCAAACTAAGCC < 41bp 0.489417752024282 0.832672502944177 0.34273535 0.68723655 prediction 0.665345005888355 Functional Gain - RPL36A;RPL36A-HNRNPH2 ENSG00000241343;ENSG00000257529 CDS Human other chrX:100646774 chrX:100646777 stopgain 1.000 0 24 hm5C_associated_SNPs_100018 0 0 1 0 2 RPL36A;RPL36A-HNRNPH2 chrX:100646810 5'GT 100646810 Upstream 34bp
chr20 36024669 36024669 1 + C A STAD 36024665 + 36024645 36024685 41 AGCGGCGGCTTCTACATCACCTCCCGCACCCAGTTCAACAG AGCGGCGGCTTCTACATCACCTCCAGCACCCAGTTCAACAG < 41bp 0.413917943606846 0.832662224553087 0.02094984 0.76538587 prediction 0.665324449106174 Functional Gain - SRC ENSG00000197122 CDS Human protein_coding chr20:36024665 chr20:36024669 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_100019 0 0 0 0 1 SRC chr20:36024714 5'GT 36024714 Upstream 46bp
chr3 68055839 68055839 1 + C A LUAD 68055835 + 68055815 68055855 41 AGTGCTTGTGCAATGCTACTCTGCCATGGATCCCTTCAGCA AGTGCTTGTGCAATGCTACTCTGCAATGGATCCCTTCAGCA < 41bp 0.527158979733844 0.859816650577508 0.018478215 0.11534962 prediction 0.665315341687329 Functional Gain - FAM19A1 ENSG00000183662 CDS Human protein_coding chr3:68055835 chr3:68055839 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_100022 0 0 0 0 2 FAM19A1 chr3:68055767 3'AG 68055767 Downstream 73bp
chr3 68055839 68055839 1 + C A LUAD 68055835 + 68055815 68055855 41 AGTGCTTGTGCAATGCTACTCTGCCATGGATCCCTTCAGCA AGTGCTTGTGCAATGCTACTCTGCAATGGATCCCTTCAGCA < 41bp 0.527158979733844 0.859816650577508 0.018478215 0.11534962 prediction 0.665315341687329 Functional Gain - FAM19A1 ENSG00000183662 CDS Human protein_coding chr3:68055835 chr3:68055839 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_100022 0 0 0 0 2 FAM19A1 chr3:68055887 5'GT 68055887 Upstream 49bp
chr5 79801834 79801834 1 + C A rs141387457 79801830 + 79801810 79801850 41 CATGATCCGCCTGCCTTGGCCTCGCGAAGTGCTGGGATTAC CATGATCCGCCTGCCTTGGCCTCGAGAAGTGCTGGGATTAC < 41bp 0.492092905402091 0.832611681742835 0.06902811 0.4459883 prediction 0.66522336348567 Functional Gain - FAM151B ENSG00000152380 UTR3 Human protein_coding chr5:79801830 chr5:79801834 . . 0 25 hm5C_associated_SNPs_100023 0 0 0 0 2 FAM151B chr5:79801762 3'AG 79801762 Downstream 73bp
chr5 79801834 79801834 1 + C A rs141387457 79801830 + 79801810 79801850 41 CATGATCCGCCTGCCTTGGCCTCGCGAAGTGCTGGGATTAC CATGATCCGCCTGCCTTGGCCTCGAGAAGTGCTGGGATTAC < 41bp 0.492092905402091 0.832611681742835 0.06902811 0.4459883 prediction 0.66522336348567 Functional Gain - FAM151B ENSG00000152380 UTR3 Human protein_coding chr5:79801830 chr5:79801834 . . 0 25 hm5C_associated_SNPs_100023 0 0 0 0 2 FAM151B chr5:79801895 5'GT 79801895 Upstream 62bp
chr1 12835768 12835768 1 + C A THCA 12835764 + 12835744 12835784 41 TGGTCTGGAGCTTCTGCACTCTCCCCAGAGGCCCTGAGTAA TGGTCTGGAGCTTCTGCACTCTCCACAGAGGCCCTGAGTAA < 41bp 0.443692633731155 0.832559517955326 0.05299002 0.92815137 prediction 0.665119035910652 Functional Gain - PRAMEF12 ENSG00000116726 CDS Human protein_coding chr1:12835764 chr1:12835768 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_100027 0 0 0 0 1 PRAMEF12 chr1:12835686 3'AG 12835686 Downstream 83bp
chr17 4805302 4805302 1 - G T HNSC 4805306 - 4805286 4805326 41 GCTCCGTGACGTGGCTGCCTCCGGCCATCTACCGCAGCGTC GCTCCGTGACGTGGCTGCCTCCGGACATCTACCGCAGCGTC < 41bp 0.536144846409524 0.868701854337813 0.49593467 0.67278814 prediction 0.665114015856578 Functional Gain - CHRNE ENSG00000108556 CDS Human protein_coding chr17:4805306 chr17:4805302 nonsynonymous SNV 0.955 4 25 hm5C_associated_SNPs_100028 0 0 0 0 2 CHRNE chr17:4805227 5'GT 4805227 Upstream 76bp
chr17 4805302 4805302 1 - G T HNSC 4805306 - 4805286 4805326 41 GCTCCGTGACGTGGCTGCCTCCGGCCATCTACCGCAGCGTC GCTCCGTGACGTGGCTGCCTCCGGACATCTACCGCAGCGTC < 41bp 0.536144846409524 0.868701854337813 0.49593467 0.67278814 prediction 0.665114015856578 Functional Gain - CHRNE ENSG00000108556 CDS Human protein_coding chr17:4805306 chr17:4805302 nonsynonymous SNV 0.955 4 25 hm5C_associated_SNPs_100028 0 0 0 0 2 CHRNE chr17:4805382 3'AG 4805382 Downstream 81bp
chr7 76121562 76121562 1 + C A STAD 76121558 + 76121538 76121578 41 CAAAGCCCAGCAGAGTCCAGCAGGCGCTCGCAGGTAGGTGC CAAAGCCCAGCAGAGTCCAGCAGGAGCTCGCAGGTAGGTGC < 41bp 0.525170336159854 0.857648778459408 0.9083983 0.91401106 prediction 0.664956884599108 Functional Gain - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76121558 chr7:76121562 nonsynonymous SNV 0.720 3 25 hm5C_associated_SNPs_100031 0 0 1 0 2 DTX2 chr7:76121470 3'AG 76121470 Downstream 93bp
chr7 76121562 76121562 1 + C A STAD 76121558 + 76121538 76121578 41 CAAAGCCCAGCAGAGTCCAGCAGGCGCTCGCAGGTAGGTGC CAAAGCCCAGCAGAGTCCAGCAGGAGCTCGCAGGTAGGTGC < 41bp 0.525170336159854 0.857648778459408 0.9083983 0.91401106 prediction 0.664956884599108 Functional Gain - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76121558 chr7:76121562 nonsynonymous SNV 0.720 3 25 hm5C_associated_SNPs_100031 0 0 1 0 2 DTX2 chr7:76121570 5'GT 76121570 Upstream 9bp
chr11 67187018 67187018 1 + C A rs375626867 67187014 + 67186994 67187034 41 CGGCAGGCATGGCGTCTGCACCCGCGGGCAGAGCTGGGTGC CGGCAGGCATGGCGTCTGCACCCGAGGGCAGAGCTGGGTGC < 41bp 0.469531539004431 0.832404445790102 0.4168485 0.5442866 prediction 0.664808891580204 Functional Gain - CARNS1 ENSG00000172508;ENSG00000172531 CDS Human other chr11:67187014 chr11:67187018 synonymous SNV . 0 25 hm5C_associated_SNPs_100035 0 0 0 0 1 CARNS1 chr11:67186958 3'AG 67186958 Downstream 61bp
chr1 32502583 32502583 1 + C A GBM 32502579 + 32502559 32502599 41 TTGAATGGAGTACCTGAACCCTCTCGTGGACGTGGGGTGCC TTGAATGGAGTACCTGAACCCTCTAGTGGACGTGGGGTGCC < 41bp 0.444032788252674 0.832399346982323 0.150246 0.8949935 prediction 0.664798693964646 Functional Gain - KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502579 chr1:32502583 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_100036 0 0 1 0 2 KHDRBS1 chr1:32502511 3'AG 32502511 Downstream 73bp
chr1 32502583 32502583 1 + C A GBM 32502579 + 32502559 32502599 41 TTGAATGGAGTACCTGAACCCTCTCGTGGACGTGGGGTGCC TTGAATGGAGTACCTGAACCCTCTAGTGGACGTGGGGTGCC < 41bp 0.444032788252674 0.832399346982323 0.150246 0.8949935 prediction 0.664798693964646 Functional Gain - KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502579 chr1:32502583 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_100036 0 0 1 0 2 KHDRBS1 chr1:32502644 5'GT 32502644 Upstream 62bp
chr19 41903833 41903833 1 + C A PRAD 41903829 + 41903809 41903849 41 GGCAGCCTGGGGCTCGGGGACTGGCTAGATCTGTGAGTACC GGCAGCCTGGGGCTCGGGGACTGGATAGATCTGTGAGTACC < 41bp 0.519287675195011 0.851683188621528 0.7221899 0.8702445 prediction 0.664791026853034 Functional Gain - BCKDHA ENSG00000248098 CDS Human protein_coding chr19:41903829 chr19:41903833 nonsynonymous SNV 0.989 1 25 hm5C_associated_SNPs_100037 0 0 1 0 1 BCKDHA chr19:41903840 5'GT 41903840 Upstream 8bp
chr6 27215713 27215713 1 + T G UCEC 27215710 + 27215690 27215730 41 ATTCAGCAGTTTCAGGAGAGCTCTGCCCAGGGCCTGGGCCT ATTCAGCAGTTTCAGGAGAGCTCGGCCCAGGGCCTGGGCCT < 41bp 0.526307511847954 0.858680156415669 0.4565777 0.9038012 prediction 0.66474528913543 Functional Gain - PRSS16 ENSG00000112812 CDS Human protein_coding chr6:27215710 chr6:27215713 synonymous SNV . 0 24 hm5C_associated_SNPs_100038 0 0 0 0 1 PRSS16 chr6:27215661 3'AG 27215661 Downstream 53bp
chr6 42986253 42986253 1 + C A STAD 42986249 + 42986229 42986269 41 CTGAGGCTTGGCTGGACTGTCCCCCGACTCCAGTGCTGCCT CTGAGGCTTGGCTGGACTGTCCCCAGACTCCAGTGCTGCCT < 41bp 0.435455679332278 0.832326243619154 0.1568704 0.3345586 prediction 0.664652487238307 Functional Gain - KLHDC3 ENSG00000124702 CDS Human protein_coding chr6:42986249 chr6:42986253 nonsynonymous SNV 0.666 0 25 hm5C_associated_SNPs_100039 0 0 1 0 1 KLHDC3 chr6:42986294 5'GT 42986294 Upstream 42bp
chr1 67155937 67155937 1 + C A LUAD 67155933 + 67155913 67155953 41 CTCCAATAGCACCCTTAGCGCGGGCTGAAAGCACTTCTTCA CTCCAATAGCACCCTTAGCGCGGGATGAAAGCACTTCTTCA < 41bp 0.531694835437651 0.863956665677107 0.53778356 0.8614738 prediction 0.664523660478911 Functional Gain - SGIP1 ENSG00000118473 CDS Human protein_coding chr1:67155933 chr1:67155937 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_100040 0 0 0 0 2 SGIP1 chr1:67155873 3'AG 67155873 Downstream 65bp
chr1 67155937 67155937 1 + C A LUAD 67155933 + 67155913 67155953 41 CTCCAATAGCACCCTTAGCGCGGGCTGAAAGCACTTCTTCA CTCCAATAGCACCCTTAGCGCGGGATGAAAGCACTTCTTCA < 41bp 0.531694835437651 0.863956665677107 0.53778356 0.8614738 prediction 0.664523660478911 Functional Gain - SGIP1 ENSG00000118473 CDS Human protein_coding chr1:67155933 chr1:67155937 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_100040 0 0 0 0 2 SGIP1 chr1:67155999 5'GT 67155999 Upstream 63bp
chr7 128095938 128095938 1 + T G rs545701895 128095935 + 128095915 128095955 41 CTGGGCGGCGTTGCTCTGCGCTCTGCGGCTGACGGCGCTTT CTGGGCGGCGTTGCTCTGCGCTCGGCGGCTGACGGCGCTTT < 41bp 0.513452514350939 0.845710066820595 0.1279265 0.21364042 prediction 0.664515104939314 Functional Gain - HILPDA ENSG00000273184 ncRNA_exonic Human processed_transcript chr7:128095935 chr7:128095938 . . 0 24 hm5C_associated_SNPs_100041 0 0 1 0 1 HILPDA chr7:128095963 5'GT 128095963 Upstream 26bp
chr11 36422802 36422802 1 + C A UCEC 36422798 + 36422778 36422818 41 CCCGATTCCAAGCAGCTCGGCAGGCTCTGCAGCTGAGCTCC CCCGATTCCAAGCAGCTCGGCAGGATCTGCAGCTGAGCTCC < 41bp 0.468646636023025 0.832246988293485 0.35741675 0.47082666 prediction 0.66449397658697 Functional Gain - PRR5L ENSG00000135362 CDS Human protein_coding chr11:36422798 chr11:36422802 nonsynonymous SNV 0.992 0 25 hm5C_associated_SNPs_100043 0 0 0 0 1 PRR5L chr11:36422835 5'GT 36422835 Upstream 34bp
chr17 21217509 21217509 1 + C A UCEC 21217505 + 21217485 21217525 41 AACCAAGAAGACGGACATTGCTGCCTTCGTGAAGGAGATCC AACCAAGAAGACGGACATTGCTGCATTCGTGAAGGAGATCC < 41bp 0.457779300199658 0.83224272398046 0.046754867 0.05845663 prediction 0.664485447960919 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21217505 chr17:21217509 synonymous SNV . 0 25 hm5C_associated_SNPs_100044 0 0 1 0 1 MAP2K3 chr17:21217459 3'AG 21217459 Downstream 51bp
chr16 30196587 30196587 1 + C A SKCM 30196583 + 30196563 30196603 41 CCGCCACGTGTTTGGACAGCCGGCCAAGGCCGACCAGTGCT CCGCCACGTGTTTGGACAGCCGGCAAAGGCCGACCAGTGCT < 41bp 0.47005185522055 0.832227197239952 0.5143186 0.84116864 prediction 0.664454394479903 Functional Gain - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30196583 chr16:30196587 synonymous SNV . 0 25 hm5C_associated_SNPs_100045 0 0 1 0 1 CORO1A chr16:30196530 3'AG 30196530 Downstream 58bp
chr20 31805464 31805464 1 + C A rs17124391 31805460 + 31805440 31805480 41 ACAGAGACAACAAATCCACCCTGGCAAGAAGTAAGCTAAGC ACAGAGACAACAAATCCACCCTGGAAAGAAGTAAGCTAAGC < 41bp 0.530943573264421 0.863139085435832 0.058041632 0.11520782 prediction 0.664391024342822 Functional Gain - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31805460 chr20:31805464 nonsynonymous SNV 0.956 2 25 hm5C_associated_SNPs_100047 0 0 0 0 1 BPIFA3 chr20:31805469 5'GT 31805469 Upstream 6bp
chr7 130002351 130002351 1 + C A LIHC 130002347 + 130002327 130002367 41 ATTCACTCCCGGGAGTGGATCACCCATGCCACCGGCATCTG ATTCACTCCCGGGAGTGGATCACCAATGCCACCGGCATCTG < 41bp 0.566667729062608 0.898862814126137 0.16445643 0.17042208 prediction 0.664390170127057 Functional Gain - CPA5 ENSG00000158525 CDS Human protein_coding chr7:130002347 chr7:130002351 nonsynonymous SNV 0.985 1 25 hm5C_associated_SNPs_100048 0 0 0 0 2 CPA5 chr7:130002279 3'AG 130002279 Downstream 73bp
chr7 130002351 130002351 1 + C A LIHC 130002347 + 130002327 130002367 41 ATTCACTCCCGGGAGTGGATCACCCATGCCACCGGCATCTG ATTCACTCCCGGGAGTGGATCACCAATGCCACCGGCATCTG < 41bp 0.566667729062608 0.898862814126137 0.16445643 0.17042208 prediction 0.664390170127057 Functional Gain - CPA5 ENSG00000158525 CDS Human protein_coding chr7:130002347 chr7:130002351 nonsynonymous SNV 0.985 1 25 hm5C_associated_SNPs_100048 0 0 0 0 2 CPA5 chr7:130002380 5'GT 130002380 Upstream 30bp
chr7 158716372 158716372 1 + T G GBM 158716369 + 158716349 158716389 41 GAAGACTCAAGGCTGCATTACTCTGTGACGCTGAGCGATGG GAAGACTCAAGGCTGCATTACTCGGTGACGCTGAGCGATGG < 41bp 0.473515283233228 0.832189855303064 0.21064603 0.29002684 prediction 0.664379710606128 Functional Gain - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158716369 chr7:158716372 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_100049 0 0 1 0 1 WDR60 chr7:158716424 5'GT 158716424 Upstream 53bp
chr4 88035561 88035561 1 + C A PAAD 88035557 + 88035537 88035577 41 AACAAATGGCAGCTGGACAACTGGCTGACCAAAGTCAGCCA AACAAATGGCAGCTGGACAACTGGATGACCAAAGTCAGCCA < 41bp 0.540960301505307 0.873034979700345 0.09290242 0.116018385 prediction 0.664149356390077 Functional Gain - AFF1 ENSG00000172493 CDS Human protein_coding chr4:88035557 chr4:88035561 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_100051 0 0 1 0 1 AFF1 chr4:88035519 3'AG 88035519 Downstream 43bp
chrX 13753123 13753123 1 + C A rs1039829942 13753119 + 13753099 13753139 41 CCCCCTCGTCTTGGCCCCACCGCCCGGGCTGGGCACTAAAC CCCCCTCGTCTTGGCCCCACCGCCAGGGCTGGGCACTAAAC < 41bp 0.487705127703623 0.831995522388373 0.09396753 0.5329838 prediction 0.663991044776747 Functional Gain - OFD1 ENSG00000046651 UTR5 Human protein_coding chrX:13753119 chrX:13753123 . . 0 25 hm5C_associated_SNPs_100052 0 0 1 0 1 OFD1 chrX:13753202 5'GT 13753202 Upstream 80bp
chr3 115395373 115395373 1 + C A LUSC 115395369 + 115395349 115395389 41 GTCACTGCTGCTGCTGCCACCACCCCTGCCGCAGAGGATGC GTCACTGCTGCTGCTGCCACCACCACTGCCGCAGAGGATGC < 41bp 0.437525879924481 0.83198591013531 0.049647003 0.08213797 prediction 0.66397182027062 Functional Gain - GAP43 ENSG00000172020 CDS Human protein_coding chr3:115395369 chr3:115395373 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_100053 0 0 0 0 1 GAP43 chr3:115395457 5'GT 115395457 Upstream 85bp
chr16 31391181 31391181 1 + C A rs560912339 31391177 + 31391157 31391197 41 GGATGGATGTGGAGGTCTCCCACCCCCAGGTACCCAAGGAC GGATGGATGTGGAGGTCTCCCACCACCAGGTACCCAAGGAC < 41bp 0.442527435230178 0.831968258716254 0.08510861 0.044920325 prediction 0.663936517432508 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31391177 chr16:31391181 nonsynonymous SNV 0.019 3 25 hm5C_associated_SNPs_100054 0 0 0 0 1 ITGAX chr16:31391185 5'GT 31391185 Upstream 5bp
chr17 47297633 47297633 1 + C A LUAD 47297629 + 47297609 47297649 41 GGACCCACCTCCTCCACCAGCAGCCGTCGAGGTGTTCCAGC GGACCCACCTCCTCCACCAGCAGCAGTCGAGGTGTTCCAGC < 41bp 0.466953406836723 0.831923688246507 0.6274635 0.81229943 prediction 0.663847376493014 Functional Gain - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47297629 chr17:47297633 synonymous SNV . 0 25 hm5C_associated_SNPs_100056 0 0 0 0 1 ABI3 chr17:47297688 5'GT 47297688 Upstream 56bp
chr9 139232363 139232363 1 + C A UCEC 139232359 + 139232339 139232379 41 GCCGAGAGGAGGGCCTACAGCAACCTGGGGAACGCCCACGT GCCGAGAGGAGGGCCTACAGCAACATGGGGAACGCCCACGT < 41bp 0.557448988919826 0.889273840380885 0.8282231 0.793665 prediction 0.663649702922117 Functional Gain - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139232359 chr9:139232363 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100061 0 0 0 0 2 GPSM1 chr9:139232303 3'AG 139232303 Downstream 61bp
chr9 139232363 139232363 1 + C A UCEC 139232359 + 139232339 139232379 41 GCCGAGAGGAGGGCCTACAGCAACCTGGGGAACGCCCACGT GCCGAGAGGAGGGCCTACAGCAACATGGGGAACGCCCACGT < 41bp 0.557448988919826 0.889273840380885 0.8282231 0.793665 prediction 0.663649702922117 Functional Gain - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139232359 chr9:139232363 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100061 0 0 0 0 2 GPSM1 chr9:139232418 5'GT 139232418 Upstream 56bp
chr1 151018593 151018593 1 + C A BLCA 151018589 + 151018569 151018609 41 TTCTGGACAGCCTGGGGGAGCTGGCCCAACTCATATCCCTG TTCTGGACAGCCTGGGGGAGCTGGACCAACTCATATCCCTG < 41bp 0.451732323348352 0.831790288316868 0.1680238 0.20276877 prediction 0.663580576633737 Functional Gain - BNIPL ENSG00000163141 CDS Human protein_coding chr1:151018589 chr1:151018593 nonsynonymous SNV 0.990 2 25 hm5C_associated_SNPs_100064 0 0 1 0 2 BNIPL chr1:151018543 3'AG 151018543 Downstream 51bp
chr1 151018593 151018593 1 + C A BLCA 151018589 + 151018569 151018609 41 TTCTGGACAGCCTGGGGGAGCTGGCCCAACTCATATCCCTG TTCTGGACAGCCTGGGGGAGCTGGACCAACTCATATCCCTG < 41bp 0.451732323348352 0.831790288316868 0.1680238 0.20276877 prediction 0.663580576633737 Functional Gain - BNIPL ENSG00000163141 CDS Human protein_coding chr1:151018589 chr1:151018593 nonsynonymous SNV 0.990 2 25 hm5C_associated_SNPs_100064 0 0 1 0 2 BNIPL chr1:151018641 5'GT 151018641 Upstream 49bp
chr1 1961455 1961455 1 + C A LGG 1961451 + 1961431 1961471 41 AGGAACGCCATTGTCCTCTTCTCCCTCTCTGCTGCCGGCGT AGGAACGCCATTGTCCTCTTCTCCATCTCTGCTGCCGGCGT < 41bp 0.452495403971264 0.831778045531962 0.34381723 0.9440652 prediction 0.663556091063924 Functional Gain - GABRD ENSG00000187730 CDS Human protein_coding chr1:1961451 chr1:1961455 nonsynonymous SNV 0.577 4 25 hm5C_associated_SNPs_100066 0 0 0 0 1 GABRD chr1:1961422 3'AG 1961422 Downstream 34bp
chr19 57954757 57954757 1 + C A STAD 57954753 + 57954733 57954773 41 ATTCCAAAGCCAGCTTTGTCCACCCTGAAGGCCCAGCCCTG ATTCCAAAGCCAGCTTTGTCCACCATGAAGGCCCAGCCCTG < 41bp 0.533918778356249 0.865580747346762 0.051238775 0.050495625 prediction 0.663323937981025 Functional Gain - ZNF749 ENSG00000186230 CDS Human protein_coding chr19:57954753 chr19:57954757 nonsynonymous SNV 0.067 1 25 hm5C_associated_SNPs_100071 0 0 0 0 1 ZNF749 chr19:57954659 3'AG 57954659 Downstream 99bp
chr17 4635147 4635147 1 + T G LUAD 4635144 + 4635124 4635164 41 CGGCAGGCGGCGGCCTTCACCGCTTCAGTGCAACACGTGGA CGGCAGGCGGCGGCCTTCACCGCGTCAGTGCAACACGTGGA < 41bp 0.471055149754786 0.831574023460498 0.19953859 0.7057619 prediction 0.663148046920997 Functional Gain - MED11 ENSG00000161920 CDS Human protein_coding chr17:4635144 chr17:4635147 synonymous SNV . 0 24 hm5C_associated_SNPs_100073 0 0 0 0 2 MED11 chr17:4635071 3'AG 4635071 Downstream 77bp
chr17 4635147 4635147 1 + T G LUAD 4635144 + 4635124 4635164 41 CGGCAGGCGGCGGCCTTCACCGCTTCAGTGCAACACGTGGA CGGCAGGCGGCGGCCTTCACCGCGTCAGTGCAACACGTGGA < 41bp 0.471055149754786 0.831574023460498 0.19953859 0.7057619 prediction 0.663148046920997 Functional Gain - MED11 ENSG00000161920 CDS Human protein_coding chr17:4635144 chr17:4635147 synonymous SNV . 0 24 hm5C_associated_SNPs_100073 0 0 0 0 2 MED11 chr17:4635201 5'GT 4635201 Upstream 55bp
chr16 54966436 54966436 1 + C A KIRC 54966432 + 54966412 54966452 41 CTCTCCCTACGACCACACACCCGGCATGGCGGGCTCCTTGG CTCTCCCTACGACCACACACCCGGAATGGCGGGCTCCTTGG < 41bp 0.467700838285727 0.831493274437687 0.40676963 0.49554822 prediction 0.662986548875374 Functional Gain - IRX5 ENSG00000176842 CDS Human protein_coding chr16:54966432 chr16:54966436 synonymous SNV . 0 25 hm5C_associated_SNPs_100074 0 0 0 0 1 IRX5 chr16:54966410 3'AG 54966410 Downstream 27bp
chr2 1491722 1491722 1 + C A LGG 1491718 + 1491698 1491738 41 CCAATTCCAGCACCTTGGATCTGGCGTCCATCAACCTGCAG CCAATTCCAGCACCTTGGATCTGGAGTCCATCAACCTGCAG < 41bp 0.469676646612018 0.831475846654131 0.4841619 0.39152318 prediction 0.662951693308263 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1491718 chr2:1491722 nonsynonymous SNV 0.882 4 25 hm5C_associated_SNPs_100075 0 0 0 0 1 TPO chr2:1491763 5'GT 1491763 Upstream 42bp
chr20 55025690 55025690 1 + C A LUAD 55025686 + 55025666 55025706 41 GCAGCAGTTATATGACATACCAGCCAGCCCCAAGAAGGCAG GCAGCAGTTATATGACATACCAGCAAGCCCCAAGAAGGCAG < 41bp 0.44061766194205 0.831351962359726 0.102151334 0.09574112 prediction 0.662703924719452 Functional Gain - CASS4 ENSG00000087589 CDS Human protein_coding chr20:55025686 chr20:55025690 synonymous SNV . 0 25 hm5C_associated_SNPs_100079 0 0 1 0 1 CASS4 chr20:55025655 3'AG 55025655 Downstream 36bp
chr12 72388308 72388308 1 + T G LUAD 72388305 + 72388285 72388325 41 ACAAGAAATAGGTCTGGCGTCTCTGGGAGCATCAGATGAAG ACAAGAAATAGGTCTGGCGTCTCGGGGAGCATCAGATGAAG < 41bp 0.49312448376103 0.83132071872794 0.38249016 0.41735196 prediction 0.66264143745588 Functional Gain - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72388305 chr12:72388308 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_100083 0 0 0 0 2 TPH2 chr12:72388219 3'AG 72388219 Downstream 90bp
chr12 72388308 72388308 1 + T G LUAD 72388305 + 72388285 72388325 41 ACAAGAAATAGGTCTGGCGTCTCTGGGAGCATCAGATGAAG ACAAGAAATAGGTCTGGCGTCTCGGGGAGCATCAGATGAAG < 41bp 0.49312448376103 0.83132071872794 0.38249016 0.41735196 prediction 0.66264143745588 Functional Gain - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72388305 chr12:72388308 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_100083 0 0 0 0 2 TPH2 chr12:72388345 5'GT 72388345 Upstream 38bp
chr14 74036526 74036526 1 + C A UCEC 74036522 + 74036502 74036542 41 GCACGAGCGCTACTTCCTCCCGCCCGGGGTGCGGCGCGAGC GCACGAGCGCTACTTCCTCCCGCCAGGGGTGCGGCGCGAGC < 41bp 0.517330490167038 0.84864503574501 0.1395204 0.75701165 prediction 0.662629091155943 Functional Gain - ACOT2 ENSG00000119673 CDS Human protein_coding chr14:74036522 chr14:74036526 synonymous SNV . 0 25 hm5C_associated_SNPs_100086 0 0 1 0 1 ACOT2 chr14:74036587 5'GT 74036587 Upstream 62bp
chr4 70156375 70156375 1 + C A LUAD 70156371 + 70156351 70156391 41 AATGGCATCTATGAGGCAATCTACCATGGGATCCCTATGGT AATGGCATCTATGAGGCAATCTACAATGGGATCCCTATGGT < 41bp 0.436646960542792 0.831234283185449 0.028243154 0.8973926 prediction 0.662468566370897 Functional Gain - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70156371 chr4:70156375 nonsynonymous SNV 0.465 0 25 hm5C_associated_SNPs_100089 0 0 0 0 1 UGT2B28 chr4:70156310 3'AG 70156310 Downstream 66bp
chr7 130023543 130023543 1 + C A rs61735962 130023539 + 130023519 130023559 41 CCCCAGATCACTCAAGACTACGGGCAGGATGCAGCTTTCAC CCCCAGATCACTCAAGACTACGGGAAGGATGCAGCTTTCAC < 41bp 0.540661111614782 0.87181833241297 0.46022826 0.74771917 prediction 0.662314441596376 Functional Gain - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130023539 chr7:130023543 nonsynonymous SNV 0.354 0 25 hm5C_associated_SNPs_100092 0 0 0 0 2 CPA1 chr7:130023525 3'AG 130023525 Downstream 19bp
chr7 130023543 130023543 1 + C A rs61735962 130023539 + 130023519 130023559 41 CCCCAGATCACTCAAGACTACGGGCAGGATGCAGCTTTCAC CCCCAGATCACTCAAGACTACGGGAAGGATGCAGCTTTCAC < 41bp 0.540661111614782 0.87181833241297 0.46022826 0.74771917 prediction 0.662314441596376 Functional Gain - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130023539 chr7:130023543 nonsynonymous SNV 0.354 0 25 hm5C_associated_SNPs_100092 0 0 0 0 2 CPA1 chr7:130023635 5'GT 130023635 Upstream 93bp
chr2 70165308 70165308 1 + T G OV 70165305 + 70165285 70165325 41 AGCAGCAGCAGTGTGAGCGACTCTGACGAGCGGGGCAGCAT AGCAGCAGCAGTGTGAGCGACTCGGACGAGCGGGGCAGCAT < 41bp 0.4923255095798 0.83100449378484 0.20671016 0.5523713 prediction 0.66200898756968 Functional Gain - MXD1 ENSG00000059728 CDS Human protein_coding chr2:70165305 chr2:70165308 synonymous SNV . 0 24 hm5C_associated_SNPs_100100 0 0 1 0 2 MXD1 chr2:70165229 3'AG 70165229 Downstream 80bp
chr2 70165308 70165308 1 + T G OV 70165305 + 70165285 70165325 41 AGCAGCAGCAGTGTGAGCGACTCTGACGAGCGGGGCAGCAT AGCAGCAGCAGTGTGAGCGACTCGGACGAGCGGGGCAGCAT < 41bp 0.4923255095798 0.83100449378484 0.20671016 0.5523713 prediction 0.66200898756968 Functional Gain - MXD1 ENSG00000059728 CDS Human protein_coding chr2:70165305 chr2:70165308 synonymous SNV . 0 24 hm5C_associated_SNPs_100100 0 0 1 0 2 MXD1 chr2:70165232 3'AG 70165232 Downstream 77bp
chr1 89834164 89834164 1 + T G OV 89834161 + 89834141 89834181 41 GTTTGCCTGGTGGAAAATAACAATGAGCAGCTATTGGTGAA GTTTGCCTGGTGGAAAATAACAAGGAGCAGCTATTGGTGAA < 41bp 0.486773910788011 0.830998713807303 0.26819396 0.9013126 prediction 0.661997427614607 Functional Gain - GBP6 ENSG00000183347 CDS Human protein_coding chr1:89834161 chr1:89834164 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_100101 0 0 0 0 1 GBP6 chr1:89834088 3'AG 89834088 Downstream 77bp
chr10 121182770 121182770 1 + C A LGG 121182766 + 121182746 121182786 41 GCCGTGCAAAGAACTCTTTTCTGCCTGTGCACAGTAAGTGC GCCGTGCAAAGAACTCTTTTCTGCATGTGCACAGTAAGTGC < 41bp 0.440696948788633 0.830979362009118 0.24824733 0.8050443 prediction 0.661958724018237 Functional Gain - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121182766 chr10:121182770 synonymous SNV . 0 25 hm5C_associated_SNPs_100104 0 0 1 0 2 GRK5 chr10:121182678 3'AG 121182678 Downstream 93bp
chr10 121182770 121182770 1 + C A LGG 121182766 + 121182746 121182786 41 GCCGTGCAAAGAACTCTTTTCTGCCTGTGCACAGTAAGTGC GCCGTGCAAAGAACTCTTTTCTGCATGTGCACAGTAAGTGC < 41bp 0.440696948788633 0.830979362009118 0.24824733 0.8050443 prediction 0.661958724018237 Functional Gain - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121182766 chr10:121182770 synonymous SNV . 0 25 hm5C_associated_SNPs_100104 0 0 1 0 2 GRK5 chr10:121182778 5'GT 121182778 Upstream 9bp
chr3 53219646 53219646 1 + C A rs201862364 53219642 + 53219622 53219662 41 AGCCTCCCGGAGATCAGACTCAGCCTCCTCAGAGCCTGTTG AGCCTCCCGGAGATCAGACTCAGCATCCTCAGAGCCTGTTG < 41bp 0.552356713705131 0.883313120811708 0.8424461 0.8920629 prediction 0.661912814213154 Functional Gain - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53219642 chr3:53219646 synonymous SNV . 0 25 hm5C_associated_SNPs_100105 0 0 1 0 2 PRKCD chr3:53219620 3'AG 53219620 Downstream 27bp
chr3 53219646 53219646 1 + C A rs201862364 53219642 + 53219622 53219662 41 AGCCTCCCGGAGATCAGACTCAGCCTCCTCAGAGCCTGTTG AGCCTCCCGGAGATCAGACTCAGCATCCTCAGAGCCTGTTG < 41bp 0.552356713705131 0.883313120811708 0.8424461 0.8920629 prediction 0.661912814213154 Functional Gain - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53219642 chr3:53219646 synonymous SNV . 0 25 hm5C_associated_SNPs_100105 0 0 1 0 2 PRKCD chr3:53219716 5'GT 53219716 Upstream 71bp
chr7 75508485 75508485 1 + C A ACC 75508481 + 75508461 75508501 41 ACCTTCTTCACTGCGCTGCTCTCGCTGCTGGTTTCCGGGCC ACCTTCTTCACTGCGCTGCTCTCGATGCTGGTTTCCGGGCC < 41bp 0.523000982858005 0.853759945557414 0.21859848 0.9290034 prediction 0.661517925398819 Functional Gain - RHBDD2 ENSG00000005486 CDS Human protein_coding chr7:75508481 chr7:75508485 nonsynonymous SNV 0.960 4 25 hm5C_associated_SNPs_100112 0 0 1 0 1 RHBDD2 chr7:75508578 5'GT 75508578 Upstream 94bp
chr20 21367621 21367621 1 + C A GBM 21367617 + 21367597 21367637 41 GGGCCTGGTGGGTATCCACCCAGACGAGATGATCGTGGAGG GGGCCTGGTGGGTATCCACCCAGAAGAGATGATCGTGGAGG < 41bp 0.460524014972304 0.830753654384676 0.4613579 0.75566196 prediction 0.661507308769353 Functional Gain - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21367617 chr20:21367621 synonymous SNV . 0 25 hm5C_associated_SNPs_100113 0 0 1 0 1 XRN2 chr20:21367644 5'GT 21367644 Upstream 24bp
chr1 25611195 25611195 1 + C A UCEC 25611191 + 25611171 25611211 41 CTTGGTGTGCAGTGGGCAATCCTGCTGGACGGCTTCCTGAG CTTGGTGTGCAGTGGGCAATCCTGATGGACGGCTTCCTGAG < 41bp 0.540604292675605 0.871337454881743 0.18748268 0.31729013 prediction 0.661466324412275 Functional Gain - RHD ENSG00000187010 CDS Human protein_coding chr1:25611191 chr1:25611195 nonsynonymous SNV 0.140 2 25 hm5C_associated_SNPs_100114 0 0 0 0 1 RHD chr1:25611250 5'GT 25611250 Upstream 56bp
chrX 65417541 65417541 1 + C A STAD 65417537 + 65417517 65417557 41 CACTACAGGCTCATCTTACCCTGGCTTGGTTGCCAAGCCCT CACTACAGGCTCATCTTACCCTGGATTGGTTGCCAAGCCCT < 41bp 0.459880450097461 0.830711749435795 0.19184259 0.40452886 prediction 0.661423498871589 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65417537 chrX:65417541 synonymous SNV . 0 25 hm5C_associated_SNPs_100115 0 0 0 0 1 HEPH chrX:65417525 3'AG 65417525 Downstream 17bp
chr1 154295484 154295484 1 + C A UCEC 154295480 + 154295460 154295500 41 GCCCACCTGAATCCAGCCTTCTCCCTGGCCATGTGCATCGT GCCCACCTGAATCCAGCCTTCTCCATGGCCATGTGCATCGT < 41bp 0.419080849024617 0.830691056278292 0.36003006 0.9670348 prediction 0.661382112556584 Functional Gain - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154295480 chr1:154295484 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_100117 0 0 0 0 1 AQP10 chr1:154295458 3'AG 154295458 Downstream 27bp
chr13 37011865 37011865 1 + C A SARC 37011861 + 37011841 37011881 41 TGTGGGGTCCAAGAGCCCCCCAAGCAAGGGTTTGACATCTA TGTGGGGTCCAAGAGCCCCCCAAGAAAGGGTTTGACATCTA < 41bp 0.438674110475334 0.830648675713052 0.043542683 0.12439281 prediction 0.661297351426103 Functional Gain - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37011861 chr13:37011865 nonsynonymous SNV 0.169 0 25 hm5C_associated_SNPs_100119 0 0 0 0 2 CCNA1 chr13:37011766 3'AG 37011766 Downstream 100bp
chr13 37011865 37011865 1 + C A SARC 37011861 + 37011841 37011881 41 TGTGGGGTCCAAGAGCCCCCCAAGCAAGGGTTTGACATCTA TGTGGGGTCCAAGAGCCCCCCAAGAAAGGGTTTGACATCTA < 41bp 0.438674110475334 0.830648675713052 0.043542683 0.12439281 prediction 0.661297351426103 Functional Gain - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37011861 chr13:37011865 nonsynonymous SNV 0.169 0 25 hm5C_associated_SNPs_100119 0 0 0 0 2 CCNA1 chr13:37011957 5'GT 37011957 Upstream 93bp
chr1 116946585 116946585 1 + C A HNSC 116946581 + 116946561 116946601 41 GAAGTCAGAAAACTCATCATCAGGCGACGCCCTGGCGGTAA GAAGTCAGAAAACTCATCATCAGGAGACGCCCTGGCGGTAA < 41bp 0.543655760609532 0.874247779531578 0.9137724 0.9238237 prediction 0.661184037844093 Functional Gain - ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116946581 chr1:116946585 synonymous SNV . 0 25 hm5C_associated_SNPs_100120 0 0 1 0 1 ATP1A1 chr1:116946506 3'AG 116946506 Downstream 80bp
chr11 77907866 77907866 1 + C A UCEC 77907862 + 77907842 77907882 41 GCGCCGTGGAGTTCCTAGAGCAGGCCCAGCAGGTGAGCGGG GCGCCGTGGAGTTCCTAGAGCAGGACCAGCAGGTGAGCGGG < 41bp 0.505955576265983 0.836461635785188 0.84035957 0.8630785 prediction 0.661012119038411 Functional Gain - USP35 ENSG00000118369 CDS Human protein_coding chr11:77907862 chr11:77907866 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_100121 0 0 0 0 1 USP35 chr11:77907964 5'GT 77907964 Upstream 99bp
chr14 81422108 81422108 1 + C A LGG 81422104 + 81422084 81422124 41 CGGAATGGGGTGTTCGTCTCCACCCTGCGAGTGCCATCAGG CGGAATGGGGTGTTCGTCTCCACCATGCGAGTGCCATCAGG < 41bp 0.455619296639323 0.830465315289569 0.24626455 0.15690878 prediction 0.660930630579138 Functional Gain - TSHR ENSG00000165409 CDS Human protein_coding chr14:81422104 chr14:81422108 synonymous SNV . 0 25 hm5C_associated_SNPs_100126 0 0 0 0 1 TSHR chr14:81422194 5'GT 81422194 Upstream 87bp
chr8 98900453 98900453 1 + C A rs567767391 98900449 + 98900429 98900469 41 GGGGCAGACACGCTCGGACCCACCCGCAGACGGCCCTTCTG GGGGCAGACACGCTCGGACCCACCAGCAGACGGCCCTTCTG < 41bp 0.559044730119902 0.889509561870205 0.013185173 0.019520909 prediction 0.660929663500606 Functional Gain - MATN2 ENSG00000132561 CDS Human protein_coding chr8:98900449 chr8:98900453 nonsynonymous SNV 0.414 2 25 hm5C_associated_SNPs_100128 0 0 0 0 1 MATN2 chr8:98900470 5'GT 98900470 Upstream 18bp
chr6 112386021 112386021 1 + C A COAD 112386017 + 112385997 112386037 41 ATCATAATGGCCAAGTGTTTCAGCCCAACCCCTTGTTCAGC ATCATAATGGCCAAGTGTTTCAGCACAACCCCTTGTTCAGC < 41bp 0.452109125618177 0.830411951548134 0.35164005 0.4008343 prediction 0.660823903096268 Functional Gain - WISP3 ENSG00000112761 CDS Human protein_coding chr6:112386017 chr6:112386021 nonsynonymous SNV 0.937 4 25 hm5C_associated_SNPs_100130 0 0 0 0 1 WISP3 chr6:112385958 3'AG 112385958 Downstream 64bp
chr9 123888093 123888093 1 + C A BRCA 123888089 + 123888069 123888109 41 CCATTAAAGGCCAGGCAACTCAGGCCCAGAATGAGTGCAGG CCATTAAAGGCCAGGCAACTCAGGACCAGAATGAGTGCAGG < 41bp 0.531374954700974 0.86166661688686 0.40674022 0.78760064 prediction 0.660583324371773 Functional Gain - CNTRL ENSG00000119397 CDS Human protein_coding chr9:123888089 chr9:123888093 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_100133 0 0 1 0 1 CNTRL chr9:123887994 3'AG 123887994 Downstream 100bp
chr8 97847387 97847387 1 + T G LUAD 97847384 + 97847364 97847404 41 TTTGGCATCTCTCATTCGATCCGTGGCCTCCTTCTCCATCT TTTGGCATCTCTCATTCGATCCGGGGCCTCCTTCTCCATCT < 41bp 0.486339468928023 0.830199842036393 0.023780584 0.91208553 prediction 0.660399684072787 Functional Gain - CPQ ENSG00000104324 CDS Human protein_coding chr8:97847384 chr8:97847387 nonsynonymous SNV 0.964 3 24 hm5C_associated_SNPs_100137 0 0 1 0 1 CPQ chr8:97847408 5'GT 97847408 Upstream 22bp
chr11 57569598 57569598 1 + T G UCEC 57569595 + 57569575 57569615 41 AACAAGATTGCCATAAAAAACTGTGATGGTGTGCCTGCCCT AACAAGATTGCCATAAAAAACTGGGATGGTGTGCCTGCCCT < 41bp 0.494416305808065 0.830179001146542 0.44891107 0.88768744 prediction 0.660358002293084 Functional Gain - CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57569595 chr11:57569598 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_100139 0 0 1 0 1 CTNND1 chr11:57569668 5'GT 57569668 Upstream 71bp
chr1 19018390 19018390 1 + C A LUSC 19018386 + 19018366 19018406 41 CTTTGAGAGGACCCACTACCCAGACATATACACCCGCGAGG CTTTGAGAGGACCCACTACCCAGAAATATACACCCGCGAGG < 41bp 0.455420086983715 0.830154412531333 0.19778278 0.37184578 prediction 0.660308825062665 Functional Gain - PAX7 ENSG00000009709 CDS Human protein_coding chr1:19018386 chr1:19018390 nonsynonymous SNV 0.880 3 25 hm5C_associated_SNPs_100141 0 0 0 0 1 PAX7 chr1:19018447 5'GT 19018447 Upstream 58bp
chr16 20487007 20487007 1 + T G LUAD 20487004 + 20486984 20487024 41 CCATCTACAGAACTGCGTCACTGTAGGGGAGTCCCTTCTTC CCATCTACAGAACTGCGTCACTGGAGGGGAGTCCCTTCTTC < 41bp 0.498022877717021 0.83015402306153 0.09129053 0.36736625 prediction 0.66030804612306 Functional Gain - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20487004 chr16:20487007 nonsynonymous SNV 0.039 0 24 hm5C_associated_SNPs_100142 0 0 0 0 2 ACSM2A chr16:20486972 3'AG 20486972 Downstream 36bp
chr16 20487007 20487007 1 + T G LUAD 20487004 + 20486984 20487024 41 CCATCTACAGAACTGCGTCACTGTAGGGGAGTCCCTTCTTC CCATCTACAGAACTGCGTCACTGGAGGGGAGTCCCTTCTTC < 41bp 0.498022877717021 0.83015402306153 0.09129053 0.36736625 prediction 0.66030804612306 Functional Gain - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20487004 chr16:20487007 nonsynonymous SNV 0.039 0 24 hm5C_associated_SNPs_100142 0 0 0 0 2 ACSM2A chr16:20487095 5'GT 20487095 Upstream 89bp
chr11 94354053 94354053 1 + T G LIHC 94354050 + 94354030 94354070 41 TTTTCTCCTCAGGGCATAGTCAGTGTCCCAGCACCATGTCA TTTTCTCCTCAGGGCATAGTCAGGGTCCCAGCACCATGTCA < 41bp 0.465897484488064 0.830119648948443 0.43509626 0.9339192 prediction 0.660239297896887 Functional Gain - PIWIL4 ENSG00000134627 CDS Human protein_coding chr11:94354050 chr11:94354053 nonsynonymous SNV 0.965 0 24 hm5C_associated_SNPs_100143 0 0 0 0 1 PIWIL4 chr11:94354042 3'AG 94354042 Downstream 12bp
chr12 108961025 108961025 1 + C A THCA 108961021 + 108961001 108961041 41 CGCCAAGGAGCTCTGCCTTCCTCCCGTGAAACTGCACTGCT CGCCAAGGAGCTCTGCCTTCCTCCAGTGAAACTGCACTGCT < 41bp 0.568633064637963 0.898739487007121 0.27941638 0.96362114 prediction 0.660212844738317 Functional Gain - ISCU ENSG00000136003 CDS Human protein_coding chr12:108961021 chr12:108961025 synonymous SNV . 0 25 hm5C_associated_SNPs_100144 0 0 1 0 2 ISCU chr12:108960966 3'AG 108960966 Downstream 60bp
chr12 108961025 108961025 1 + C A THCA 108961021 + 108961001 108961041 41 CGCCAAGGAGCTCTGCCTTCCTCCCGTGAAACTGCACTGCT CGCCAAGGAGCTCTGCCTTCCTCCAGTGAAACTGCACTGCT < 41bp 0.568633064637963 0.898739487007121 0.27941638 0.96362114 prediction 0.660212844738317 Functional Gain - ISCU ENSG00000136003 CDS Human protein_coding chr12:108961021 chr12:108961025 synonymous SNV . 0 25 hm5C_associated_SNPs_100144 0 0 1 0 2 ISCU chr12:108961044 5'GT 108961044 Upstream 20bp
chr2 103324635 103324635 1 + C A LUSC 103324631 + 103324611 103324651 41 GGACCACCGTGCTCAATTTGCAGCCCAGAGCCAGGCGCTTC GGACCACCGTGCTCAATTTGCAGCACAGAGCCAGGCGCTTC < 41bp 0.537646997656723 0.867666349778259 0.12285641 0.08320689 prediction 0.660038704243072 Functional Gain - SLC9A2 ENSG00000115616 CDS Human protein_coding chr2:103324631 chr2:103324635 nonsynonymous SNV 0.768 4 25 hm5C_associated_SNPs_100148 0 0 0 0 1 SLC9A2 chr2:103324578 3'AG 103324578 Downstream 58bp
chr1 20644059 20644059 1 + C A rs61743892 20644055 + 20644035 20644075 41 CTGCTTCGGTGCCTGGGCCCCGGGCTCCTGGAATAAGTTGT CTGCTTCGGTGCCTGGGCCCCGGGATCCTGGAATAAGTTGT < 41bp 0.464028547913958 0.830011217111481 0.25687438 0.58716446 prediction 0.660022434222962 Functional Gain - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20644055 chr1:20644059 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_100150 0 0 0 0 1 VWA5B1 chr1:20644023 3'AG 20644023 Downstream 37bp
chr17 78071179 78071179 1 + C A LUAD 78071175 + 78071155 78071195 41 GACACACTCGAGGCCGACCTCACCCGGCTTGGGGCCCTCAA GACACACTCGAGGCCGACCTCACCAGGCTTGGGGCCCTCAA < 41bp 0.429634080381349 0.829971966067919 0.27282792 0.5656578 prediction 0.659943932135838 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78071175 chr17:78071179 synonymous SNV . 0 25 hm5C_associated_SNPs_100151 0 0 0 0 1 CCDC40 chr17:78071202 5'GT 78071202 Upstream 24bp
chr7 73771660 73771660 1 + C A LUAD 73771656 + 73771636 73771676 41 CCGCAAGATCTCGGGCACCACGGCCTTGCAGGAGGCACTGA CCGCAAGATCTCGGGCACCACGGCATTGCAGGAGGCACTGA < 41bp 0.440327261962322 0.829958994753753 0.38307887 0.21391854 prediction 0.659917989507507 Functional Gain - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73771656 chr7:73771660 synonymous SNV . 0 25 hm5C_associated_SNPs_100153 0 0 0 0 1 CLIP2 chr7:73771610 3'AG 73771610 Downstream 51bp
chr19 17886885 17886885 1 + C A SARC 17886881 + 17886861 17886901 41 ATGTGCACATCAAGCCTGCCCCGGCCCGGGCTCCAGCCTGC ATGTGCACATCAAGCCTGCCCCGGACCGGGCTCCAGCCTGC < 41bp 0.464102720150848 0.829837279548109 0.09795186 0.073610485 prediction 0.659674559096219 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17886881 chr19:17886885 nonsynonymous SNV 0.059 0 25 hm5C_associated_SNPs_100159 0 0 0 0 1 FCHO1 chr19:17886970 5'GT 17886970 Upstream 86bp
chr1 11345764 11345764 1 + C A UCEC 11345760 + 11345740 11345780 41 TCCTCATCACTTTTGGCCCGCTGGCTGTGATGTTCGCCTAC TCCTCATCACTTTTGGCCCGCTGGATGTGATGTTCGCCTAC < 41bp 0.532771664946376 0.862541134165687 0.15840405 0.4542258 prediction 0.659538938438622 Functional Gain - UBIAD1 ENSG00000120942 CDS Human protein_coding chr1:11345760 chr1:11345764 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100164 0 0 1 0 1 UBIAD1 chr1:11345701 3'AG 11345701 Downstream 64bp
chr17 76230693 76230693 1 + T G rs79885699 76230690 + 76230670 76230710 41 GCAGTGCTGCACCGTGCAGTCATTGTGGTCCTGCCCCTGAG GCAGTGCTGCACCGTGCAGTCATGGTGGTCCTGCCCCTGAG < 41bp 0.465966932156948 0.829761072892169 0.3365289 0.895046 prediction 0.659522145784337 Functional Gain - TMEM235 ENSG00000204278 CDS Human protein_coding chr17:76230690 chr17:76230693 nonsynonymous SNV 0.960 0 24 hm5C_associated_SNPs_100165 0 0 0 0 1 TMEM235 chr17:76230674 3'AG 76230674 Downstream 20bp
chr3 33840424 33840424 1 + C A UCEC 33840420 + 33840400 33840440 41 GCACGAGGGCGCGCTCGAGACGCTCCTGAGGTGGGCGCGGG GCACGAGGGCGCGCTCGAGACGCTACTGAGGTGGGCGCGGG < 41bp 0.522249024161467 0.852003601298298 0.34381872 0.84802413 prediction 0.659509154273662 Functional Gain - PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33840420 chr3:33840424 synonymous SNV . 0 25 hm5C_associated_SNPs_100166 0 0 1 0 1 PDCD6IP chr3:33840429 5'GT 33840429 Upstream 6bp
chr20 4158129 4158129 1 + C A UCEC 4158125 + 4158105 4158145 41 GAACGCAGCGTGGGCCGCATCAGCCTCTATTCCAAGAATGG GAACGCAGCGTGGGCCGCATCAGCATCTATTCCAAGAATGG < 41bp 0.444170846655399 0.829731609416806 0.048488706 0.22548321 prediction 0.659463218833612 Functional Gain - SMOX ENSG00000088826 CDS Human protein_coding chr20:4158125 chr20:4158129 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_100167 0 0 1 0 2 SMOX chr20:4158067 3'AG 4158067 Downstream 63bp
chr20 4158129 4158129 1 + C A UCEC 4158125 + 4158105 4158145 41 GAACGCAGCGTGGGCCGCATCAGCCTCTATTCCAAGAATGG GAACGCAGCGTGGGCCGCATCAGCATCTATTCCAAGAATGG < 41bp 0.444170846655399 0.829731609416806 0.048488706 0.22548321 prediction 0.659463218833612 Functional Gain - SMOX ENSG00000088826 CDS Human protein_coding chr20:4158125 chr20:4158129 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_100167 0 0 1 0 2 SMOX chr20:4158224 5'GT 4158224 Upstream 96bp
chr1 162325137 162325137 1 + C A UCEC 162325133 + 162325113 162325153 41 GAAGGAAGGAGGCTCTCACACAGGCTCCAAGGTAGGCAAGA GAAGGAAGGAGGCTCTCACACAGGATCCAAGGTAGGCAAGA < 41bp 0.505028804066491 0.834668703437584 0.80721617 0.8460535 prediction 0.659279798742186 Functional Gain - NOS1AP ENSG00000198929 CDS Human protein_coding chr1:162325133 chr1:162325137 synonymous SNV . 0 25 hm5C_associated_SNPs_100171 0 0 1 0 1 NOS1AP chr1:162325143 5'GT 162325143 Upstream 7bp
chr22 42354235 42354235 1 + C A UCEC 42354231 + 42354211 42354251 41 GGACTCAGGCATGTCTATGGCTGCCTGTCCTGAGGCTCCGG GGACTCAGGCATGTCTATGGCTGCATGTCCTGAGGCTCCGG < 41bp 0.533401400330519 0.862976016385077 0.16703737 0.8414414 prediction 0.659149232109116 Functional Gain - LINC00634 ENSG00000205704 ncRNA_exonic Human transcribed_unitary_pseudogene chr22:42354231 chr22:42354235 . . 0 25 hm5C_associated_SNPs_100173 0 0 0 0 1 LINC00634 chr22:42354219 3'AG 42354219 Downstream 17bp
chr1 46740345 46740345 1 + C A LUAD 46740341 + 46740321 46740361 41 GAACAAGCCATGGCCCGGGTCTGGCGAGATGGTCAAAAGAA GAACAAGCCATGGCCCGGGTCTGGAGAGATGGTCAAAAGAA < 41bp 0.456135458833463 0.829461658779608 0.24971959 0.293548 prediction 0.658923317559216 Functional Gain - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46740341 chr1:46740345 synonymous SNV . 0 25 hm5C_associated_SNPs_100179 0 0 1 0 1 RAD54L chr1:46740389 5'GT 46740389 Upstream 45bp
chr20 31786036 31786036 1 + C A UCEC 31786032 + 31786012 31786052 41 CCGAAGATGCTGAATGTCTCCGGCCTCTTTGTTCTCCTCTG CCGAAGATGCTGAATGTCTCCGGCATCTTTGTTCTCCTCTG < 41bp 0.50939588492029 0.838815831505049 0.29647192 0.45171905 prediction 0.658839893169518 Functional Gain - BPIFA4P ENSG00000183566 ncRNA_exonic Human transcribed_unitary_pseudogene chr20:31786032 chr20:31786036 . . 0 25 hm5C_associated_SNPs_100180 0 0 0 0 1 BPIFA4P chr20:31786117 5'GT 31786117 Upstream 82bp
chr3 39431056 39431056 1 + C A UCEC 39431052 + 39431032 39431072 41 CCTGCTCTACCCTCCTTTTCCAACCTCTGGATCTCCTTAAA CCTGCTCTACCCTCCTTTTCCAACATCTGGATCTCCTTAAA < 41bp 0.443886373870288 0.829390655098616 0.3610378 0.24345791 prediction 0.658781310197232 Functional Gain - SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431052 chr3:39431056 nonsynonymous SNV 0.986 5 25 hm5C_associated_SNPs_100181 0 0 1 0 2 SLC25A38 chr3:39430986 3'AG 39430986 Downstream 71bp
chr3 39431056 39431056 1 + C A UCEC 39431052 + 39431032 39431072 41 CCTGCTCTACCCTCCTTTTCCAACCTCTGGATCTCCTTAAA CCTGCTCTACCCTCCTTTTCCAACATCTGGATCTCCTTAAA < 41bp 0.443886373870288 0.829390655098616 0.3610378 0.24345791 prediction 0.658781310197232 Functional Gain - SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431052 chr3:39431056 nonsynonymous SNV 0.986 5 25 hm5C_associated_SNPs_100181 0 0 1 0 2 SLC25A38 chr3:39431107 5'GT 39431107 Upstream 52bp
chr14 35735958 35735958 1 + C A rs144536804 35735954 + 35735934 35735974 41 TCTTGAATGTCGTCTCTCAACTAGCCAAACGGAATCTGCGA TCTTGAATGTCGTCTCTCAACTAGACAAACGGAATCTGCGA < 41bp 0.545321559980323 0.874688385256824 0.3613277 0.17874038 prediction 0.658733650553002 Functional Gain - KIAA0391 ENSG00000100890;ENSG00000258790 CDS Human other chr14:35735954 chr14:35735958 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_100182 0 0 0 0 1 KIAA0391 chr14:35735933 3'AG 35735933 Downstream 26bp
chr6 167708138 167708138 1 + C A OV 167708134 + 167708114 167708154 41 GCTGCAAGGGGACCATCATCCTCTCCATGTGTGGCTACGTG GCTGCAAGGGGACCATCATCCTCTACATGTGTGGCTACGTG < 41bp 0.435136182077503 0.829362426098562 0.9473961 0.92209256 prediction 0.658724852197124 Functional Gain - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167708134 chr6:167708138 nonsynonymous SNV 0.905 4 25 hm5C_associated_SNPs_100183 0 0 1 0 1 UNC93A chr6:167708186 5'GT 167708186 Upstream 49bp
chr1 215752442 215752442 1 + C A UCEC 215752438 + 215752418 215752458 41 AAGCCCGGGGAAATGGTACACAGCCTGTTCTCTCTGGAACG AAGCCCGGGGAAATGGTACACAGCATGTTCTCTCTGGAACG < 41bp 0.455037453680245 0.829351712485512 0.11421198 0.15225735 prediction 0.658703424971024 Functional Gain - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215752438 chr1:215752442 nonsynonymous SNV 0.894 4 25 hm5C_associated_SNPs_100185 0 0 0 0 1 KCTD3 chr1:215752480 5'GT 215752480 Upstream 39bp
chr19 46173898 46173898 1 + C A UCEC 46173894 + 46173874 46173914 41 CCCTTCTTTCTTTTCCTAGACAGGCTCTAAGGGGCAGACGG CCCTTCTTTCTTTTCCTAGACAGGATCTAAGGGGCAGACGG < 41bp 0.534286952714068 0.863635421569668 0.2515763 0.5407882 prediction 0.6586969377112 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46173894 chr19:46173898 synonymous SNV . 0 25 hm5C_associated_SNPs_100186 0 0 1 0 2 GIPR chr19:46173893 3'AG 46173893 Downstream 6bp
chr19 46173898 46173898 1 + C A UCEC 46173894 + 46173874 46173914 41 CCCTTCTTTCTTTTCCTAGACAGGCTCTAAGGGGCAGACGG CCCTTCTTTCTTTTCCTAGACAGGATCTAAGGGGCAGACGG < 41bp 0.534286952714068 0.863635421569668 0.2515763 0.5407882 prediction 0.6586969377112 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46173894 chr19:46173898 synonymous SNV . 0 25 hm5C_associated_SNPs_100186 0 0 1 0 2 GIPR chr19:46173992 5'GT 46173992 Upstream 95bp
chr14 21498837 21498837 1 + C A UCEC 21498833 + 21498813 21498853 41 ATGAACAACAAGAACTTCTCCAAGCTGTGCAAAGACTGTGG ATGAACAACAAGAACTTCTCCAAGATGTGCAAAGACTGTGG < 41bp 0.458353842346368 0.829339480634945 0.04647097 0.0491651 prediction 0.65867896126989 Functional Gain - TPPP2 ENSG00000179636 CDS Human protein_coding chr14:21498833 chr14:21498837 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_100187 0 0 0 0 1 TPPP2 chr14:21498913 5'GT 21498913 Upstream 77bp
chr17 32956131 32956131 1 + C A LUSC 32956127 + 32956107 32956147 41 AGGATCATGTGGCACATTGACTACCGTGGCCACGGCGCCCT AGGATCATGTGGCACATTGACTACAGTGGCCACGGCGCCCT < 41bp 0.567179672570226 0.896518516979699 0.20785695 0.85099244 prediction 0.658677688818946 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32956127 chr17:32956131 nonsynonymous SNV 0.965 2 25 hm5C_associated_SNPs_100188 0 0 1 0 1 TMEM132E chr17:32956223 5'GT 32956223 Upstream 93bp
chr8 87163720 87163720 1 + T G COAD 87163717 + 87163697 87163737 41 ATACAAACCTTTATTTGAAGCTGTAGGTGGCAGTGGGGGAA ATACAAACCTTTATTTGAAGCTGGAGGTGGCAGTGGGGGAA < 41bp 0.511583428193858 0.84084015356895 0.14097258 0.21012005 prediction 0.658513450750185 Functional Gain - ATP6V0D2 ENSG00000147614 CDS Human protein_coding chr8:87163717 chr8:87163720 nonsynonymous SNV 0.987 0 24 hm5C_associated_SNPs_100190 0 0 0 0 2 ATP6V0D2 chr8:87163695 3'AG 87163695 Downstream 26bp
chr8 87163720 87163720 1 + T G COAD 87163717 + 87163697 87163737 41 ATACAAACCTTTATTTGAAGCTGTAGGTGGCAGTGGGGGAA ATACAAACCTTTATTTGAAGCTGGAGGTGGCAGTGGGGGAA < 41bp 0.511583428193858 0.84084015356895 0.14097258 0.21012005 prediction 0.658513450750185 Functional Gain - ATP6V0D2 ENSG00000147614 CDS Human protein_coding chr8:87163717 chr8:87163720 nonsynonymous SNV 0.987 0 24 hm5C_associated_SNPs_100190 0 0 0 0 2 ATP6V0D2 chr8:87163769 5'GT 87163769 Upstream 50bp
chr1 89849661 89849661 1 + C A COAD 89849657 + 89849637 89849677 41 ACCTTCATGGAGCAGTGGATCGGGCCAAGAAGGAGGCAGCT ACCTTCATGGAGCAGTGGATCGGGACAAGAAGGAGGCAGCT < 41bp 0.525926292319342 0.855102107978349 0.9031473 0.907212 prediction 0.658351631318013 Functional Gain - GBP6 ENSG00000183347 CDS Human protein_coding chr1:89849657 chr1:89849661 nonsynonymous SNV 0.045 2 25 hm5C_associated_SNPs_100192 0 0 0 0 1 GBP6 chr1:89849652 3'AG 89849652 Downstream 10bp
chr1 158152703 158152703 1 + C A UCS 158152699 + 158152679 158152719 41 GCCTGGCTGTCCCGTGGCCCCAGTCCTGGCCCTGGCCGTCT GCCTGGCTGTCCCGTGGCCCCAGTACTGGCCCTGGCCGTCT < 41bp 0.465357390910309 0.829171631580095 0.1845701 0.3216961 prediction 0.65834326316019 Functional Gain - CD1D ENSG00000158473 CDS Human protein_coding chr1:158152699 chr1:158152703 nonsynonymous SNV 0.458 2 25 hm5C_associated_SNPs_100194 0 0 0 0 1 CD1D chr1:158152668 3'AG 158152668 Downstream 36bp
chr11 60885736 60885736 1 + C A LUAD 60885732 + 60885712 60885752 41 GACGGATGGCACATGGTTTGCAGCCAGAGCTGGGGCCGGAG GACGGATGGCACATGGTTTGCAGCAAGAGCTGGGGCCGGAG < 41bp 0.548690840922872 0.877851808342451 0.15102565 0.05125633 prediction 0.658321934839157 Functional Gain - CD5 ENSG00000110448 CDS Human protein_coding chr11:60885732 chr11:60885736 nonsynonymous SNV 0.344 0 25 hm5C_associated_SNPs_100195 0 0 0 0 1 CD5 chr11:60885647 3'AG 60885647 Downstream 90bp
chr12 112924299 112924299 1 + C A ESCA 112924295 + 112924275 112924315 41 CCAGGGGAATACGGAGAGAACGGTCTGGCAATACCACTTTC CCAGGGGAATACGGAGAGAACGGTATGGCAATACCACTTTC < 41bp 0.45176892063209 0.829128293245431 0.37179613 0.3236432 prediction 0.658256586490862 Functional Gain - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112924295 chr12:112924299 synonymous SNV . 0 25 hm5C_associated_SNPs_100196 0 0 1 0 1 PTPN11 chr12:112924279 3'AG 112924279 Downstream 21bp
chr19 38896204 38896204 1 + T G rs117354953 38896201 + 38896181 38896221 41 AAAGCCTCAGAGATCAGTACCGCTGCCGCCGCTGCCTCCTC AAAGCCTCAGAGATCAGTACCGCGGCCGCCGCTGCCTCCTC < 41bp 0.460985637112422 0.829091279374815 0.4420079 0.9077391 prediction 0.658182558749629 Functional Gain - FAM98C ENSG00000130244 CDS Human protein_coding chr19:38896201 chr19:38896204 nonsynonymous SNV 0.935 1 24 hm5C_associated_SNPs_100201 0 0 0 0 2 FAM98C chr19:38896159 3'AG 38896159 Downstream 46bp
chr19 38896204 38896204 1 + T G rs117354953 38896201 + 38896181 38896221 41 AAAGCCTCAGAGATCAGTACCGCTGCCGCCGCTGCCTCCTC AAAGCCTCAGAGATCAGTACCGCGGCCGCCGCTGCCTCCTC < 41bp 0.460985637112422 0.829091279374815 0.4420079 0.9077391 prediction 0.658182558749629 Functional Gain - FAM98C ENSG00000130244 CDS Human protein_coding chr19:38896201 chr19:38896204 nonsynonymous SNV 0.935 1 24 hm5C_associated_SNPs_100201 0 0 0 0 2 FAM98C chr19:38896275 5'GT 38896275 Upstream 72bp
chr11 65161129 65161129 1 + C A rs2073800 65161125 + 65161105 65161145 41 GCTGCGCTTCACCAGTGCCCCAGACGATGACGTGGCCATGG GCTGCGCTTCACCAGTGCCCCAGAAGATGACGTGGCCATGG < 41bp 0.463560802914831 0.829090497125818 0.4193971 0.5867958 prediction 0.658180994251636 Functional Gain - FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65161125 chr11:65161129 nonsynonymous SNV 0.061 0 25 hm5C_associated_SNPs_100203 0 0 0 0 2 FRMD8 chr11:65161044 3'AG 65161044 Downstream 86bp
chr11 65161129 65161129 1 + C A rs2073800 65161125 + 65161105 65161145 41 GCTGCGCTTCACCAGTGCCCCAGACGATGACGTGGCCATGG GCTGCGCTTCACCAGTGCCCCAGAAGATGACGTGGCCATGG < 41bp 0.463560802914831 0.829090497125818 0.4193971 0.5867958 prediction 0.658180994251636 Functional Gain - FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65161125 chr11:65161129 nonsynonymous SNV 0.061 0 25 hm5C_associated_SNPs_100203 0 0 0 0 2 FRMD8 chr11:65161145 5'GT 65161145 Upstream 17bp
chr19 35827052 35827052 1 + T G SKCM 35827049 + 35827029 35827069 41 ATGGGTATCCGATCCAATTGCAGTGGCTCCTAGAGGGGGTT ATGGGTATCCGATCCAATTGCAGGGGCTCCTAGAGGGGGTT < 41bp 0.449183611862226 0.82907860925758 0.41243693 0.90401673 prediction 0.658157218515161 Functional Gain - CD22 ENSG00000012124 CDS Human protein_coding chr19:35827049 chr19:35827052 nonsynonymous SNV 0.050 5 24 hm5C_associated_SNPs_100205 0 0 0 0 1 CD22 chr19:35827052 3'AG 35827052 Downstream 1bp
chr17 4496307 4496307 1 + C A rs112578571 4496303 + 4496283 4496323 41 CCTCGTCCTGTGAGCCTCTCCTTGCGGCTGCCCCACCAGCC CCTCGTCCTGTGAGCCTCTCCTTGAGGCTGCCCCACCAGCC < 41bp 0.437715490743127 0.829066200146036 0.31859022 0.3568232 prediction 0.658132400292072 Functional Gain - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4496303 chr17:4496307 synonymous SNV . 0 25 hm5C_associated_SNPs_100206 0 0 0 0 1 SMTNL2 chr17:4496224 3'AG 4496224 Downstream 84bp
chr16 88779068 88779068 1 + C A UCEC 88779064 + 88779044 88779084 41 ACCGTCGGTGCTTTGGTGCTCTGCCCAGGAGCTGGTGGGAT ACCGTCGGTGCTTTGGTGCTCTGCACAGGAGCTGGTGGGAT < 41bp 0.452631035719793 0.829038918252569 0.14071172 0.5977987 prediction 0.658077836505138 Functional Gain - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88779064 chr16:88779068 synonymous SNV . 0 25 hm5C_associated_SNPs_100207 0 0 1 0 1 CTU2 chr16:88779030 3'AG 88779030 Downstream 39bp
chr8 17125809 17125809 1 + T G KIRC 17125806 + 17125786 17125826 41 CCTCAGGAAAAACCAGTGATCAGTGTTTATCCACCAATACG CCTCAGGAAAAACCAGTGATCAGGGTTTATCCACCAATACG < 41bp 0.530149745168014 0.859053116488869 0.24019128 0.9547322 prediction 0.65780674264171 Functional Gain - VPS37A ENSG00000155975 CDS Human protein_coding chr8:17125806 chr8:17125809 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_100212 0 0 1 0 2 VPS37A chr8:17125767 3'AG 17125767 Downstream 43bp
chr8 17125809 17125809 1 + T G KIRC 17125806 + 17125786 17125826 41 CCTCAGGAAAAACCAGTGATCAGTGTTTATCCACCAATACG CCTCAGGAAAAACCAGTGATCAGGGTTTATCCACCAATACG < 41bp 0.530149745168014 0.859053116488869 0.24019128 0.9547322 prediction 0.65780674264171 Functional Gain - VPS37A ENSG00000155975 CDS Human protein_coding chr8:17125806 chr8:17125809 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_100212 0 0 1 0 2 VPS37A chr8:17125881 5'GT 17125881 Upstream 73bp
chr22 29629429 29629429 1 + T G HNSC 29629426 + 29629406 29629446 41 AACCACTGGCCCCAGGGACCCACTGGGCCTCCAGGCCCTCC AACCACTGGCCCCAGGGACCCACGGGGCCTCCAGGCCCTCC < 41bp 0.459875882610404 0.828869034069909 0.15620893 0.83749485 prediction 0.657738068139817 Functional Gain - EMID1 ENSG00000186998 CDS Human protein_coding chr22:29629426 chr22:29629429 synonymous SNV . 0 24 hm5C_associated_SNPs_100213 0 0 0 0 1 EMID1 chr22:29629457 5'GT 29629457 Upstream 29bp
chr20 42907638 42907638 1 + C A LUAD 42907634 + 42907614 42907654 41 TGGCTCTGTGGCTGTGCCTTCACCCTCGCTGATGTCCTCCT TGGCTCTGTGGCTGTGCCTTCACCATCGCTGATGTCCTCCT < 41bp 0.448040545696584 0.828856741371684 0.2395595 0.1277081 prediction 0.657713482743368 Functional Gain - GDAP1L1 ENSG00000124194 CDS Human protein_coding chr20:42907634 chr20:42907638 nonsynonymous SNV 0.979 4 25 hm5C_associated_SNPs_100215 0 0 0 0 1 GDAP1L1 chr20:42907597 3'AG 42907597 Downstream 42bp
chr17 61769133 61769133 1 + C A LUAD 61769129 + 61769109 61769149 41 AGTTGAAGGCTTACGGTGCTCTGACAGAGAGCGTGACCCGA AGTTGAAGGCTTACGGTGCTCTGAAAGAGAGCGTGACCCGA < 41bp 0.434706951071681 0.828843818271914 0.0332098 0.048768252 prediction 0.657687636543828 Functional Gain - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61769129 chr17:61769133 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_100216 0 0 0 0 1 MAP3K3 chr17:61769093 3'AG 61769093 Downstream 41bp
chr6 50683317 50683317 1 + C A THCA 50683313 + 50683293 50683333 41 GGGGCTGGCCGCCGCGGGAGCAGACGACTTGCAGGTAAATA GGGGCTGGCCGCCGCGGGAGCAGAAGACTTGCAGGTAAATA < 41bp 0.468784446552166 0.82877618158892 0.8961474 0.9026016 prediction 0.65755236317784 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50683313 chr6:50683317 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_100218 0 0 0 0 1 TFAP2D chr6:50683326 5'GT 50683326 Upstream 10bp
chr17 19999983 19999983 1 + C A UCEC 19999979 + 19999959 19999999 41 TCAAGCATGCGGAGTGCAGCCAAGCCCTGGAACCCAGCCAT TCAAGCATGCGGAGTGCAGCCAAGACCTGGAACCCAGCCAT < 41bp 0.536613191905589 0.865329846026587 0.34262595 0.33599937 prediction 0.657433308241997 Functional Gain - SPECC1 ENSG00000128487 CDS Human protein_coding chr17:19999979 chr17:19999983 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_100222 0 0 1 0 1 SPECC1 chr17:19999944 3'AG 19999944 Downstream 40bp
chr1 52246899 52246899 1 + C A SARC 52246895 + 52246875 52246915 41 GGTTGTGAAATGGTACCTCTCAGCCTTTCATGCGGGAAGGA GGTTGTGAAATGGTACCTCTCAGCATTTCATGCGGGAAGGA < 41bp 0.54773444377782 0.876433945107285 0.7575951 0.33014715 prediction 0.657399002658929 Functional Gain - OSBPL9 ENSG00000117859 CDS Human protein_coding chr1:52246895 chr1:52246899 synonymous SNV . 0 25 hm5C_associated_SNPs_100224 0 0 1 1 1 OSBPL9 chr1:52246836 3'AG 52246836 Downstream 64bp
chr6 167752194 167752194 1 + C A GBM 167752190 + 167752170 167752210 41 ACATTCCATCCGAGGCAAACCACACTGAGCAGCCGCCTGCA ACATTCCATCCGAGGCAAACCACAATGAGCAGCCGCCTGCA < 41bp 0.55614477263191 0.88480627912494 0.044266313 0.08939621 prediction 0.657323012986061 Functional Gain - TTLL2 ENSG00000120440 CDS Human protein_coding chr6:167752190 chr6:167752194 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_100227 0 0 0 0 2 TTLL2 chr6:167752135 3'AG 167752135 Downstream 60bp
chr6 167752194 167752194 1 + C A GBM 167752190 + 167752170 167752210 41 ACATTCCATCCGAGGCAAACCACACTGAGCAGCCGCCTGCA ACATTCCATCCGAGGCAAACCACAATGAGCAGCCGCCTGCA < 41bp 0.55614477263191 0.88480627912494 0.044266313 0.08939621 prediction 0.657323012986061 Functional Gain - TTLL2 ENSG00000120440 CDS Human protein_coding chr6:167752190 chr6:167752194 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_100227 0 0 0 0 2 TTLL2 chr6:167752291 5'GT 167752291 Upstream 98bp
chr7 100552728 100552728 1 + C A LUAD 100552724 + 100552704 100552744 41 CCTTACATCACGCAGGACAACTCGCATCACTTCTCAGATGA CCTTACATCACGCAGGACAACTCGAATCACTTCTCAGATGA < 41bp 0.466705793678528 0.828651255353976 0.056928635 0.4752361 prediction 0.657302510707953 Functional Gain - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100552724 chr7:100552728 synonymous SNV . 0 25 hm5C_associated_SNPs_100228 0 0 0 0 1 MUC3A chr7:100552774 5'GT 100552774 Upstream 47bp
chr16 1559927 1559927 1 + C A rs375348828 1559923 + 1559903 1559943 41 TCAAGAACAGGCTCCTCCCACCCGCGTCTCCCTAGTCCCTG TCAAGAACAGGCTCCTCCCACCCGAGTCTCCCTAGTCCCTG < 41bp 0.477973494854593 0.828595970215984 0.13768631 0.09489113 prediction 0.657191940431968 Functional Gain - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1559923 chr16:1559927 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_100231 0 0 1 0 1 TELO2 chr16:1559831 3'AG 1559831 Downstream 97bp
chr4 115544771 115544771 1 + C A rs61733375 115544767 + 115544747 115544787 41 CAGCCTGTGGATGCTGTGTACTGACGTAGCACTGGAATTCC CAGCCTGTGGATGCTGTGTACTGAAGTAGCACTGGAATTCC < 41bp 0.444536555844213 0.828583783609325 0.16301957 0.23585695 prediction 0.65716756721865 Functional Gain - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115544767 chr4:115544771 nonsynonymous SNV 0.928 3 25 hm5C_associated_SNPs_100232 0 0 1 0 1 UGT8 chr4:115544858 5'GT 115544858 Upstream 88bp
chr1 151238020 151238020 1 + C A UCEC 151238016 + 151237996 151238036 41 TTGGCTGGTGAAGGTGGTGCCATGCTGGGTCTTGGTGCCAG TTGGCTGGTGAAGGTGGTGCCATGATGGGTCTTGGTGCCAG < 41bp 0.457054716102773 0.828563457996046 0.07744005 0.17253941 prediction 0.657126915992093 Functional Gain - PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151238016 chr1:151238020 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_100233 0 0 1 0 1 PSMD4 chr1:151238085 5'GT 151238085 Upstream 66bp
chr3 14798940 14798940 1 + T G LUAD 14798937 + 14798917 14798957 41 GGCCTTGCCCTCAGACTGCCCGCTGGTGCTGCGGAAGCTCA GGCCTTGCCCTCAGACTGCCCGCGGGTGCTGCGGAAGCTCA < 41bp 0.462321906551653 0.828559708893191 0.2530216 0.69888926 prediction 0.657119417786383 Functional Gain - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14798937 chr3:14798940 nonsynonymous SNV 0.948 3 24 hm5C_associated_SNPs_100234 0 0 0 0 1 C3orf20 chr3:14798878 3'AG 14798878 Downstream 63bp
chr1 3624206 3624206 1 + C A rs145204413 3624202 + 3624182 3624222 41 ACCCCAGAGCACGCCGCCAGCGTGCCCACCCACTCGCCCTA ACCCCAGAGCACGCCGCCAGCGTGACCACCCACTCGCCCTA < 41bp 0.503856438667501 0.832287074980469 0.39879665 0.61861706 prediction 0.656861272625936 Functional Gain - TP73 ENSG00000078900 CDS Human protein_coding chr1:3624202 chr1:3624206 nonsynonymous SNV 0.916 4 25 hm5C_associated_SNPs_100242 0 0 0 0 1 TP73 chr1:3624113 3'AG 3624113 Downstream 94bp
chr1 54371890 54371890 1 + C A LUSC 54371886 + 54371866 54371906 41 TGCCCTGTGGTGGTGGACACCATGCAGAACCAGAGCAGCCA TGCCCTGTGGTGGTGGACACCATGAAGAACCAGAGCAGCCA < 41bp 0.465389855787719 0.828418905567817 0.18377063 0.20994696 prediction 0.656837811135634 Functional Gain - DIO1 ENSG00000211452 CDS Human protein_coding chr1:54371886 chr1:54371890 nonsynonymous SNV 0.952 0 25 hm5C_associated_SNPs_100244 0 0 0 2 1 DIO1 chr1:54371967 5'GT 54371967 Upstream 78bp
chr2 1241762 1241762 1 + C A KIRP 1241758 + 1241738 1241778 41 CGACTGGCTGCGGGCGGTCTCAGCCAACATCAGGGAGCTGA CGACTGGCTGCGGGCGGTCTCAGCAAACATCAGGGAGCTGA < 41bp 0.542535928531911 0.870951879100964 0.29728764 0.6920093 prediction 0.656831901138108 Functional Gain - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1241758 chr2:1241762 synonymous SNV . 0 25 hm5C_associated_SNPs_100245 0 0 0 0 1 SNTG2 chr2:1241789 5'GT 1241789 Upstream 28bp
chrX 153608120 153608120 1 + C A rs782051850 153608116 + 153608096 153608136 41 CCAGAGGCGGCGGCTCTCGCCCCCCAGCTCGTCCGCCGCCT CCAGAGGCGGCGGCTCTCGCCCCCAAGCTCGTCCGCCGCCT < 41bp 0.426772454740811 0.828264707537309 0.07372445 0.22168753 prediction 0.656529415074617 Functional Gain - EMD ENSG00000102119 CDS Human protein_coding chrX:153608116 chrX:153608120 synonymous SNV . 0 25 hm5C_associated_SNPs_100250 0 0 1 0 2 EMD chrX:153608050 3'AG 153608050 Downstream 71bp
chrX 153608120 153608120 1 + C A rs782051850 153608116 + 153608096 153608136 41 CCAGAGGCGGCGGCTCTCGCCCCCCAGCTCGTCCGCCGCCT CCAGAGGCGGCGGCTCTCGCCCCCAAGCTCGTCCGCCGCCT < 41bp 0.426772454740811 0.828264707537309 0.07372445 0.22168753 prediction 0.656529415074617 Functional Gain - EMD ENSG00000102119 CDS Human protein_coding chrX:153608116 chrX:153608120 synonymous SNV . 0 25 hm5C_associated_SNPs_100250 0 0 1 0 2 EMD chrX:153608154 5'GT 153608154 Upstream 35bp
chr17 61939715 61939715 1 + C A CESC 61939711 + 61939691 61939731 41 CCTGGCTGGAAGGGATGGAACACACGCTCGCCTGCGTCCCA CCTGGCTGGAAGGGATGGAACACAAGCTCGCCTGCGTCCCA < 41bp 0.484837122432073 0.828251966950753 0.024564356 0.120816976 prediction 0.656503933901505 Functional Gain - TCAM1P ENSG00000240280 ncRNA_exonic Human transcribed_unitary_pseudogene chr17:61939711 chr17:61939715 . . 0 25 hm5C_associated_SNPs_100253 0 0 0 0 1 TCAM1P chr17:61939649 3'AG 61939649 Downstream 67bp
chr10 74660187 74660187 1 + C A rs146090082 74660183 + 74660163 74660203 41 CCATGGCAGCTGCTCAGATACCAGCGAGTGCACATGCGCTC CCATGGCAGCTGCTCAGATACCAGAGAGTGCACATGCGCTC < 41bp 0.441651686747812 0.828240294377815 0.41552195 0.66527563 prediction 0.656480588755631 Functional Gain - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74660183 chr10:74660187 nonsynonymous SNV 0.130 1 25 hm5C_associated_SNPs_100254 0 0 0 0 2 OIT3 chr10:74660135 3'AG 74660135 Downstream 53bp
chr10 74660187 74660187 1 + C A rs146090082 74660183 + 74660163 74660203 41 CCATGGCAGCTGCTCAGATACCAGCGAGTGCACATGCGCTC CCATGGCAGCTGCTCAGATACCAGAGAGTGCACATGCGCTC < 41bp 0.441651686747812 0.828240294377815 0.41552195 0.66527563 prediction 0.656480588755631 Functional Gain - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74660183 chr10:74660187 nonsynonymous SNV 0.130 1 25 hm5C_associated_SNPs_100254 0 0 0 0 2 OIT3 chr10:74660242 5'GT 74660242 Upstream 56bp
chr2 36994315 36994315 1 + C A PAAD 36994311 + 36994291 36994331 41 CGGTCACTCTGATGCAGCTTCTGGCTGTCACTGTAGCTGTG CGGTCACTCTGATGCAGCTTCTGGATGTCACTGTAGCTGTG < 41bp 0.547811976445885 0.876004768898349 0.07334295 0.20243195 prediction 0.656385584904927 Functional Gain - VIT ENSG00000205221 CDS Human protein_coding chr2:36994311 chr2:36994315 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_100255 0 0 0 0 1 VIT chr2:36994237 3'AG 36994237 Downstream 79bp
chr19 35504178 35504178 1 + C A SARC 35504174 + 35504154 35504194 41 CCCCAGACGCTGAGTCCCCGCGAGCTCTGGCACCTGGTGCA CCCCAGACGCTGAGTCCCCGCGAGATCTGGCACCTGGTGCA < 41bp 0.471333616691175 0.828177659522337 0.71288633 0.90514076 prediction 0.656355319044674 Functional Gain - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504174 chr19:35504178 nonsynonymous SNV 0.979 3 25 hm5C_associated_SNPs_100256 0 0 1 0 2 GRAMD1A chr19:35504160 3'AG 35504160 Downstream 19bp
chr19 35504178 35504178 1 + C A SARC 35504174 + 35504154 35504194 41 CCCCAGACGCTGAGTCCCCGCGAGCTCTGGCACCTGGTGCA CCCCAGACGCTGAGTCCCCGCGAGATCTGGCACCTGGTGCA < 41bp 0.471333616691175 0.828177659522337 0.71288633 0.90514076 prediction 0.656355319044674 Functional Gain - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504174 chr19:35504178 nonsynonymous SNV 0.979 3 25 hm5C_associated_SNPs_100256 0 0 1 0 2 GRAMD1A chr19:35504272 5'GT 35504272 Upstream 95bp
chr17 7983572 7983572 1 - G T STAD 7983576 - 7983556 7983596 41 GGACATTAGGAAAATTTTCCCTGGCAAGAAATCTGTCGTCT GGACATTAGGAAAATTTTCCCTGGAAAGAAATCTGTCGTCT < 41bp 0.556414559697765 0.884591672598931 0.14222673 0.23017734 prediction 0.656354225802332 Functional Gain - ALOX12B ENSG00000179477;ENSG00000214999 CDS Human other chr17:7983576 chr17:7983572 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_100257 0 0 0 0 2 ALOX12B chr17:7983553 5'GT 7983553 Upstream 20bp
chr17 7983572 7983572 1 - G T STAD 7983576 - 7983556 7983596 41 GGACATTAGGAAAATTTTCCCTGGCAAGAAATCTGTCGTCT GGACATTAGGAAAATTTTCCCTGGAAAGAAATCTGTCGTCT < 41bp 0.556414559697765 0.884591672598931 0.14222673 0.23017734 prediction 0.656354225802332 Functional Gain - ALOX12B ENSG00000179477;ENSG00000214999 CDS Human other chr17:7983576 chr17:7983572 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_100257 0 0 0 0 2 ALOX12B chr17:7983656 3'AG 7983656 Downstream 85bp
chr22 19484966 19484966 1 + C A LGG 19484962 + 19484942 19484982 41 CTGTCCAAGGACCTGAATGACATGCTGTGGTACGTAGCCCC CTGTCCAAGGACCTGAATGACATGATGTGGTACGTAGCCCC < 41bp 0.445191641253092 0.828139248309622 0.3361451 0.23925325 prediction 0.656278496619244 Functional Gain - CDC45 ENSG00000093009 CDS Human protein_coding chr22:19484962 chr22:19484966 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_100258 0 0 1 0 2 CDC45 chr22:19484909 3'AG 19484909 Downstream 58bp
chr22 19484966 19484966 1 + C A LGG 19484962 + 19484942 19484982 41 CTGTCCAAGGACCTGAATGACATGCTGTGGTACGTAGCCCC CTGTCCAAGGACCTGAATGACATGATGTGGTACGTAGCCCC < 41bp 0.445191641253092 0.828139248309622 0.3361451 0.23925325 prediction 0.656278496619244 Functional Gain - CDC45 ENSG00000093009 CDS Human protein_coding chr22:19484962 chr22:19484966 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_100258 0 0 1 0 2 CDC45 chr22:19484970 5'GT 19484970 Upstream 5bp
chr11 64335111 64335111 1 + C A HNSC 64335107 + 64335087 64335127 41 TCCTACTATGGGCTGGTCTTCGACCTGCAGAGCCTGGGCCG TCCTACTATGGGCTGGTCTTCGACATGCAGAGCCTGGGCCG < 41bp 0.539412771775065 0.867523846836906 0.53588855 0.4948774 prediction 0.656222150123681 Functional Gain - SLC22A11 ENSG00000168065 CDS Human protein_coding chr11:64335107 chr11:64335111 nonsynonymous SNV 0.049 3 25 hm5C_associated_SNPs_100259 0 0 0 0 1 SLC22A11 chr11:64335071 3'AG 64335071 Downstream 41bp
chr12 110032905 110032905 1 + C A LIHC 110032901 + 110032881 110032921 41 CACGCCTCTCTGGACCAGCTCTGCCAGGTGACCAGGGCCCG CACGCCTCTCTGGACCAGCTCTGCAAGGTGACCAGGGCCCG < 41bp 0.433057354906495 0.828108129721972 0.056435287 0.18942627 prediction 0.656216259443945 Functional Gain - MVK ENSG00000110921 CDS Human protein_coding chr12:110032901 chr12:110032905 nonsynonymous SNV 0.983 2 25 hm5C_associated_SNPs_100260 0 0 1 0 1 MVK chr12:110032833 3'AG 110032833 Downstream 73bp
chr19 56561817 56561817 1 + T G OV 56561814 + 56561794 56561834 41 TGCCACCTGGACACGGCTGGCTGTGGTTTTCTTGCACTTGC TGCCACCTGGACACGGCTGGCTGGGGTTTTCTTGCACTTGC < 41bp 0.457501415990167 0.828068791733836 0.399679 0.9053492 prediction 0.656137583467673 Functional Gain - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56561814 chr19:56561817 nonsynonymous SNV 0.009 2 24 hm5C_associated_SNPs_100262 0 0 0 0 1 NLRP5 chr19:56561784 3'AG 56561784 Downstream 34bp
chr3 169500324 169500324 1 + C A OV 169500320 + 169500300 169500340 41 GATTTGCTCAAGCCAGCACACTGACCTATCATGTCCGTAGG GATTTGCTCAAGCCAGCACACTGAACTATCATGTCCGTAGG < 41bp 0.451032179144745 0.828033951188144 0.055426776 0.09265208 prediction 0.656067902376289 Functional Gain - MYNN ENSG00000085274 CDS Human protein_coding chr3:169500320 chr3:169500324 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_100265 0 0 0 2 1 MYNN chr3:169500253 3'AG 169500253 Downstream 72bp
chr16 8722946 8722946 1 + C A STAD 8722942 + 8722922 8722962 41 CTGGGAGAGGAAGCACAAGGCAGCCCGCACGATATCATCAG CTGGGAGAGGAAGCACAAGGCAGCACGCACGATATCATCAG < 41bp 0.452264746277519 0.828004320623139 0.36485997 0.37871554 prediction 0.656008641246279 Functional Gain - METTL22 ENSG00000067365 CDS Human protein_coding chr16:8722942 chr16:8722946 nonsynonymous SNV 0.026 0 25 hm5C_associated_SNPs_100268 0 0 1 0 1 METTL22 chr16:8722967 5'GT 8722967 Upstream 22bp
chr15 39881465 39881465 1 + C A LUSC 39881461 + 39881441 39881481 41 AGAGCACCGGTGTGAGAACACGGACCCCGGCTACAACTGCC AGAGCACCGGTGTGAGAACACGGAACCCGGCTACAACTGCC < 41bp 0.445600411965109 0.827930632009716 0.36688417 0.40463394 prediction 0.655861264019433 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39881461 chr15:39881465 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_100272 0 0 1 0 2 THBS1 chr15:39881403 3'AG 39881403 Downstream 63bp
chr15 39881465 39881465 1 + C A LUSC 39881461 + 39881441 39881481 41 AGAGCACCGGTGTGAGAACACGGACCCCGGCTACAACTGCC AGAGCACCGGTGTGAGAACACGGAACCCGGCTACAACTGCC < 41bp 0.445600411965109 0.827930632009716 0.36688417 0.40463394 prediction 0.655861264019433 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39881461 chr15:39881465 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_100272 0 0 1 0 2 THBS1 chr15:39881555 5'GT 39881555 Upstream 91bp
chr12 113376452 113376452 1 + C A rs1859329 113376448 + 113376428 113376468 41 CGCTCTGGGCGCCCTGGCCGCTGCCCTGAGGGAGCGCGGGG CGCTCTGGGCGCCCTGGCCGCTGCACTGAGGGAGCGCGGGG < 41bp 0.474826012553155 0.827866788711764 0.2616979 0.41062722 prediction 0.655733577423529 Functional Gain - OAS3 ENSG00000111331 CDS Human protein_coding chr12:113376448 chr12:113376452 synonymous SNV . 0 25 hm5C_associated_SNPs_100274 0 0 1 0 1 OAS3 chr12:113376512 5'GT 113376512 Upstream 61bp
chr16 30096088 30096088 1 + C A COAD 30096084 + 30096064 30096104 41 GCCAATGACATTGACATGATCTGCCGTGCCCACCAACTGGT GCCAATGACATTGACATGATCTGCAGTGCCCACCAACTGGT < 41bp 0.559948517586833 0.887804698584584 0.14233506 0.2853154 prediction 0.655712361995503 Functional Gain - PPP4C ENSG00000149923 CDS Human protein_coding chr16:30096084 chr16:30096088 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_100275 0 0 1 0 1 PPP4C chr16:30096176 5'GT 30096176 Upstream 89bp
chr10 71025536 71025536 1 + T G rs143913672 71025533 + 71025513 71025553 41 GGGCTAGAGCACCTGAGGATCACTGTGGGTGTGGACGGCAC GGGCTAGAGCACCTGAGGATCACGGTGGGTGTGGACGGCAC < 41bp 0.53864630800822 0.866458572175133 0.21017915 0.45843884 prediction 0.655624528333826 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71025533 chr10:71025536 synonymous SNV . 0 24 hm5C_associated_SNPs_100276 0 0 0 0 1 HKDC1 chr10:71025574 5'GT 71025574 Upstream 39bp
chr11 120837934 120837934 1 + C A ESCA 120837930 + 120837910 120837950 41 TTTTCCGGGACGAGTTTGATCTGGCCATTCTCCAGCTGCAG TTTTCCGGGACGAGTTTGATCTGGACATTCTCCAGCTGCAG < 41bp 0.47077465291221 0.827754162193246 0.84692574 0.48842278 prediction 0.655508324386492 Functional Gain - GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120837930 chr11:120837934 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100279 0 0 0 0 2 GRIK4 chr11:120837904 3'AG 120837904 Downstream 31bp
chr11 120837934 120837934 1 + C A ESCA 120837930 + 120837910 120837950 41 TTTTCCGGGACGAGTTTGATCTGGCCATTCTCCAGCTGCAG TTTTCCGGGACGAGTTTGATCTGGACATTCTCCAGCTGCAG < 41bp 0.47077465291221 0.827754162193246 0.84692574 0.48842278 prediction 0.655508324386492 Functional Gain - GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120837930 chr11:120837934 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100279 0 0 0 0 2 GRIK4 chr11:120838032 5'GT 120838032 Upstream 99bp
chr9 72472843 72472843 1 + C A COAD 72472839 + 72472819 72472859 41 TTTTAGGGTCACCGGATTGCCTGCCACAGGTTTTGGAGCTG TTTTAGGGTCACCGGATTGCCTGCAACAGGTTTTGGAGCTG < 41bp 0.562366354288637 0.890076657349726 0.025546432 0.29590976 prediction 0.655420606122178 Functional Gain - C9orf135 ENSG00000204711 CDS Human protein_coding chr9:72472839 chr9:72472843 synonymous SNV . 0 25 hm5C_associated_SNPs_100282 0 0 0 0 1 C9orf135 chr9:72472893 5'GT 72472893 Upstream 51bp
chrX 153418558 153418558 1 + C A LUAD 153418554 + 153418534 153418574 41 GATCTGGTCTGCTGTGTGGACAGCCCCGCCCATCTTTGGTT GATCTGGTCTGCTGTGTGGACAGCACCGCCCATCTTTGGTT < 41bp 0.440290677330984 0.827589421129152 0.26407856 0.20594046 prediction 0.655178842258303 Functional Gain - OPN1LW ENSG00000102076 CDS Human protein_coding chrX:153418554 chrX:153418558 synonymous SNV . 0 25 hm5C_associated_SNPs_100286 0 0 0 0 1 OPN1LW chrX:153418581 5'GT 153418581 Upstream 24bp
chr13 107029338 107029338 1 + C A rs138340888 107029334 + 107029314 107029354 41 CCCTGGATGAACCACCATTGCCAGCGGGGAGCATGTTGCAG CCCTGGATGAACCACCATTGCCAGAGGGGAGCATGTTGCAG < 41bp 0.503682300035628 0.8312386088341 0.77357185 0.9065391 prediction 0.655112617596943 Functional Gain - LINC00460 ENSG00000233532 ncRNA_exonic Human lincRNA chr13:107029334 chr13:107029338 . . 0 25 hm5C_associated_SNPs_100287 0 0 0 2 1 LINC00460 chr13:107029432 5'GT 107029432 Upstream 95bp
chr21 15013702 15013702 1 + C A LUAD 15013698 + 15013678 15013718 41 CATAAGAAAGAAGAAGATCTCTTGCGTGAAAACAGCGTGTT CATAAGAAAGAAGAAGATCTCTTGAGTGAAAACAGCGTGTT < 41bp 0.470651096923614 0.82751447378107 0.1729298 0.29475668 prediction 0.655028947562139 Functional Gain - POTED ENSG00000166351 CDS Human protein_coding chr21:15013698 chr21:15013702 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_100288 0 0 0 0 1 POTED chr21:15013666 3'AG 15013666 Downstream 37bp
chr1 47501792 47501792 1 + C A rs199790231 47501788 + 47501768 47501808 41 AGTGACATAATTTTCAAACTCAGCCCTCAGGGCTACCGCTT AGTGACATAATTTTCAAACTCAGCACTCAGGGCTACCGCTT < 41bp 0.438113713854633 0.827466750946267 0.018552125 0.022048831 prediction 0.654933501892534 Functional Gain - CYP4X1 ENSG00000186377 CDS Human protein_coding chr1:47501788 chr1:47501792 nonsynonymous SNV 0.404 2 25 hm5C_associated_SNPs_100289 0 0 0 0 1 CYP4X1 chr1:47501843 5'GT 47501843 Upstream 52bp
chr7 128843398 128843398 1 + T G STAD 128843395 + 128843375 128843415 41 GGGGCTGGCCTGACTTCCTGCGCTGCACTCCTGACCGCTTC GGGGCTGGCCTGACTTCCTGCGCGGCACTCCTGACCGCTTC < 41bp 0.459574295363851 0.827426802110068 0.17766866 0.35730958 prediction 0.654853604220136 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128843395 chr7:128843398 nonsynonymous SNV 0.994 5 24 hm5C_associated_SNPs_100290 0 0 1 0 1 SMO chr7:128843430 5'GT 128843430 Upstream 33bp
chr2 234741833 234741833 1 + C A COAD 234741829 + 234741809 234741849 41 GGATCCCGGGGTCAGGAGGGCAGCCCTGGAGACGCTCACAG GGATCCCGGGGTCAGGAGGGCAGCACTGGAGACGCTCACAG < 41bp 0.473729318488925 0.827421183432721 0.7161 0.7210292 prediction 0.654842366865443 Functional Gain - MROH2A ENSG00000185038 CDS Human protein_coding chr2:234741829 chr2:234741833 synonymous SNV . 0 25 hm5C_associated_SNPs_100291 0 0 0 0 1 MROH2A chr2:234741784 3'AG 234741784 Downstream 50bp
chr1 220971285 220971285 1 + C A OV 220971281 + 220971261 220971301 41 TCGCTGGCGGATCTCAACTCCAGGCTAGAGAAGAAAGTTAA TCGCTGGCGGATCTCAACTCCAGGATAGAGAAGAAAGTTAA < 41bp 0.441607517914467 0.827261921153551 0.8789959 0.74520516 prediction 0.654523842307102 Functional Gain - MARC1 ENSG00000186205 CDS Human protein_coding chr1:220971281 chr1:220971285 nonsynonymous SNV 0.945 1 25 hm5C_associated_SNPs_100300 0 0 1 0 2 MARC1 chr1:220971216 3'AG 220971216 Downstream 70bp
chr1 220971285 220971285 1 + C A OV 220971281 + 220971261 220971301 41 TCGCTGGCGGATCTCAACTCCAGGCTAGAGAAGAAAGTTAA TCGCTGGCGGATCTCAACTCCAGGATAGAGAAGAAAGTTAA < 41bp 0.441607517914467 0.827261921153551 0.8789959 0.74520516 prediction 0.654523842307102 Functional Gain - MARC1 ENSG00000186205 CDS Human protein_coding chr1:220971281 chr1:220971285 nonsynonymous SNV 0.945 1 25 hm5C_associated_SNPs_100300 0 0 1 0 2 MARC1 chr1:220971356 5'GT 220971356 Upstream 72bp
chr1 158324250 158324250 1 + C A LUSC 158324246 + 158324226 158324266 41 CTCCAAACTTCCTCCTTTGCCAACCACAGCTGGGCACACAG CTCCAAACTTCCTCCTTTGCCAACAACAGCTGGGCACACAG < 41bp 0.506649323231534 0.833830923810028 0.30430973 0.2466428 prediction 0.654363201156989 Functional Gain - CD1E ENSG00000158488 CDS Human protein_coding chr1:158324246 chr1:158324250 nonsynonymous SNV 0.945 0 25 hm5C_associated_SNPs_100302 0 0 0 0 1 CD1E chr1:158324167 3'AG 158324167 Downstream 84bp
chr1 44128655 44128655 1 + C A LUAD 44128651 + 44128631 44128671 41 ATCACCATTGAGGGTGTGAACACCCCATACCTGTACTTTGG ATCACCATTGAGGGTGTGAACACCACATACCTGTACTTTGG < 41bp 0.435961410057129 0.827084888532093 0.21788958 0.19232717 prediction 0.654169777064186 Functional Gain - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44128651 chr1:44128655 nonsynonymous SNV 0.963 4 25 hm5C_associated_SNPs_100305 0 0 1 0 1 KDM4A chr1:44128565 3'AG 44128565 Downstream 91bp
chr11 61254046 61254046 1 + C A LUAD 61254042 + 61254022 61254062 41 CAGAGGCTCCAAGCGGGAAACAGCCTTCAGCCGAGGGAATG CAGAGGCTCCAAGCGGGAAACAGCATTCAGCCGAGGGAATG < 41bp 0.435924130554564 0.827046268336695 0.31913322 0.54224825 prediction 0.65409253667339 Functional Gain - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61254042 chr11:61254046 synonymous SNV . 0 25 hm5C_associated_SNPs_100308 0 0 0 0 1 PPP1R32 chr11:61253996 3'AG 61253996 Downstream 51bp
chr1 150236250 150236250 1 + C A UCEC 150236246 + 150236226 150236266 41 TTGGCTGTCTCTGCCTTCTCCTGGCTGTTTATTTCATTGCT TTGGCTGTCTCTGCCTTCTCCTGGATGTTTATTTCATTGCT < 41bp 0.440640921322033 0.826999356274902 0.45114583 0.67593294 prediction 0.653998712549803 Functional Gain - CA14 ENSG00000118298 CDS Human protein_coding chr1:150236246 chr1:150236250 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_100311 0 0 0 0 2 CA14 chr1:150236193 3'AG 150236193 Downstream 58bp
chr1 150236250 150236250 1 + C A UCEC 150236246 + 150236226 150236266 41 TTGGCTGTCTCTGCCTTCTCCTGGCTGTTTATTTCATTGCT TTGGCTGTCTCTGCCTTCTCCTGGATGTTTATTTCATTGCT < 41bp 0.440640921322033 0.826999356274902 0.45114583 0.67593294 prediction 0.653998712549803 Functional Gain - CA14 ENSG00000118298 CDS Human protein_coding chr1:150236246 chr1:150236250 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_100311 0 0 0 0 2 CA14 chr1:150236277 5'GT 150236277 Upstream 28bp
chr10 101439612 101439612 1 + C A READ 101439608 + 101439588 101439628 41 TCTTTACATCCTCTGCACAGCAGGCATGAGGCTTCTCCCTG TCTTTACATCCTCTGCACAGCAGGAATGAGGCTTCTCCCTG < 41bp 0.544512111653953 0.871508268068684 0.3772407 0.5687467 prediction 0.653992312829461 Functional Gain - ENTPD7 ENSG00000198018 CDS Human protein_coding chr10:101439608 chr10:101439612 synonymous SNV . 0 25 hm5C_associated_SNPs_100312 0 0 1 0 1 ENTPD7 chr10:101439632 5'GT 101439632 Upstream 21bp
chrX 64709206 64709206 1 + C A ESCA 64709202 + 64709182 64709222 41 GCCCAGCTCCAGAGAGATTGCAAGCCCTGAATTGTCTCTTG GCCCAGCTCCAGAGAGATTGCAAGACCTGAATTGTCTCTTG < 41bp 0.469322854693181 0.826984047567896 0.3189256 0.85751486 prediction 0.653968095135792 Functional Gain - ZC3H12B ENSG00000102053 CDS Human protein_coding chrX:64709202 chrX:64709206 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_100315 0 0 0 0 1 ZC3H12B chrX:64709289 5'GT 64709289 Upstream 84bp
chr16 56868102 56868102 1 + C A CESC 56868098 + 56868078 56868118 41 CTGAACTTCGTGCGGCTCCTCATGCTGTACACCCGGAAGTT CTGAACTTCGTGCGGCTCCTCATGATGTACACCCGGAAGTT < 41bp 0.450994077486442 0.826978129584942 0.06443921 0.24201238 prediction 0.653956259169884 Functional Gain - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56868098 chr16:56868102 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_100316 0 0 1 0 2 NUP93 chr16:56868040 3'AG 56868040 Downstream 63bp
chr16 56868102 56868102 1 + C A CESC 56868098 + 56868078 56868118 41 CTGAACTTCGTGCGGCTCCTCATGCTGTACACCCGGAAGTT CTGAACTTCGTGCGGCTCCTCATGATGTACACCCGGAAGTT < 41bp 0.450994077486442 0.826978129584942 0.06443921 0.24201238 prediction 0.653956259169884 Functional Gain - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56868098 chr16:56868102 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_100316 0 0 1 0 2 NUP93 chr16:56868166 5'GT 56868166 Upstream 65bp
chr17 37898897 37898897 1 + C A UCEC 37898893 + 37898873 37898913 41 CTTCCCTGAGCTCTGCAGTCCTCCCTCACAGAGCCCAATTC CTTCCCTGAGCTCTGCAGTCCTCCATCACAGAGCCCAATTC < 41bp 0.419903000452751 0.826868888452199 0.20373121 0.9710184 prediction 0.653737776904399 Functional Gain - GRB7 ENSG00000141738 CDS Human protein_coding chr17:37898893 chr17:37898897 synonymous SNV . 0 25 hm5C_associated_SNPs_100317 0 0 1 0 2 GRB7 chr17:37898819 3'AG 37898819 Downstream 79bp
chr17 37898897 37898897 1 + C A UCEC 37898893 + 37898873 37898913 41 CTTCCCTGAGCTCTGCAGTCCTCCCTCACAGAGCCCAATTC CTTCCCTGAGCTCTGCAGTCCTCCATCACAGAGCCCAATTC < 41bp 0.419903000452751 0.826868888452199 0.20373121 0.9710184 prediction 0.653737776904399 Functional Gain - GRB7 ENSG00000141738 CDS Human protein_coding chr17:37898893 chr17:37898897 synonymous SNV . 0 25 hm5C_associated_SNPs_100317 0 0 1 0 2 GRB7 chr17:37898969 5'GT 37898969 Upstream 73bp
chr1 32681437 32681437 1 + T G BRCA 32681434 + 32681414 32681454 41 GATAGTGGAAGAGGCCTTGTCCCTGGAAAACCAGCCTGGGG GATAGTGGAAGAGGCCTTGTCCCGGGAAAACCAGCCTGGGG < 41bp 0.534944701311927 0.861776675418355 0.27030724 0.8274647 prediction 0.653663948212855 Functional Gain - DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32681434 chr1:32681437 nonsynonymous SNV 0.046 0 24 hm5C_associated_SNPs_100319 0 0 0 0 1 DCDC2B chr1:32681403 3'AG 32681403 Downstream 35bp
chr6 17292081 17292081 1 + C A LUAD 17292077 + 17292057 17292097 41 ACAGCAGCTGCCGCCTCCACCACCCCTTACATTGATTACAC ACAGCAGCTGCCGCCTCCACCACCACTTACATTGATTACAC < 41bp 0.554414251718825 0.881243151050674 0.15300778 0.23197049 prediction 0.653657798663699 Functional Gain - RBM24 ENSG00000112183 CDS Human protein_coding chr6:17292077 chr6:17292081 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_100320 0 0 0 2 1 RBM24 chr6:17291987 3'AG 17291987 Downstream 95bp
chr13 113770092 113770092 1 + C A rs6040 113770088 + 113770068 113770108 41 CGAGGGGTACTCTCTGCTGGCAGACGGGGTGTCCTGCACAC CGAGGGGTACTCTCTGCTGGCAGAAGGGGTGTCCTGCACAC < 41bp 0.547403593947687 0.874222659348511 0.8730723 0.8899038 prediction 0.653638130801648 Functional Gain - F7 ENSG00000057593 CDS Human protein_coding chr13:113770088 chr13:113770092 nonsynonymous SNV 0.018 5 25 hm5C_associated_SNPs_100321 0 0 1 0 1 F7 chr13:113770114 5'GT 113770114 Upstream 23bp
chr17 1648635 1648635 1 + C A rs185025710 1648631 + 1648611 1648651 41 TTGCTCCTTTCCGCAGCTAACTAGCGGGCCGAACCAGGAGC TTGCTCCTTTCCGCAGCTAACTAGAGGGCCGAACCAGGAGC < 41bp 0.459288227449641 0.826794638685193 0.39234835 0.60669047 prediction 0.653589277370386 Functional Gain - SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1648631 chr17:1648635 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_100323 0 0 1 0 3 SERPINF2 chr17:1648627 3'AG 1648627 Downstream 9bp
chr17 1648635 1648635 1 + C A rs185025710 1648631 + 1648611 1648651 41 TTGCTCCTTTCCGCAGCTAACTAGCGGGCCGAACCAGGAGC TTGCTCCTTTCCGCAGCTAACTAGAGGGCCGAACCAGGAGC < 41bp 0.459288227449641 0.826794638685193 0.39234835 0.60669047 prediction 0.653589277370386 Functional Gain - SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1648631 chr17:1648635 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_100323 0 0 1 0 3 SERPINF2 chr17:1648689 5'GT 1648689 Upstream 55bp
chr17 1648635 1648635 1 + C A rs185025710 1648631 + 1648611 1648651 41 TTGCTCCTTTCCGCAGCTAACTAGCGGGCCGAACCAGGAGC TTGCTCCTTTCCGCAGCTAACTAGAGGGCCGAACCAGGAGC < 41bp 0.459288227449641 0.826794638685193 0.39234835 0.60669047 prediction 0.653589277370386 Functional Gain - SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1648631 chr17:1648635 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_100323 0 0 1 0 3 SERPINF2 chr17:1648699 5'GT 1648699 Upstream 65bp
chr10 71868902 71868902 1 + C A UCEC 71868898 + 71868878 71868918 41 CTTGAAGAGACCATCAAAAACTGCCTGTCAGCGGCGGAGGA CTTGAAGAGACCATCAAAAACTGCATGTCAGCGGCGGAGGA < 41bp 0.572968837449858 0.899733446583407 0.07473999 0.087672085 prediction 0.653529218267098 Functional Gain - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71868898 chr10:71868902 nonsynonymous SNV 0.958 4 25 hm5C_associated_SNPs_100327 0 0 1 0 1 H2AFY2 chr10:71868963 5'GT 71868963 Upstream 62bp
chr22 23438545 23438545 1 + C A LUAD 23438541 + 23438521 23438561 41 CCACTGCTTCGAGGGCGTCACAGCCATCATCTTCTGTGTGG CCACTGCTTCGAGGGCGTCACAGCAATCATCTTCTGTGTGG < 41bp 0.445111698376201 0.826673216772052 0.088149875 0.2039398 prediction 0.653346433544103 Functional Gain - GNAZ ENSG00000128266 CDS Human protein_coding chr22:23438541 chr22:23438545 synonymous SNV . 0 25 hm5C_associated_SNPs_100329 0 0 0 0 1 GNAZ chr22:23438605 5'GT 23438605 Upstream 61bp
chr10 60560042 60560042 1 + C A GBM 60560038 + 60560018 60560058 41 ATCACGGGGATCCGTCCATCCAGACAAGTGGGTCTGAGCAG ATCACGGGGATCCGTCCATCCAGAAAAGTGGGTCTGAGCAG < 41bp 0.440859421365867 0.826653374827365 0.34688497 0.41180354 prediction 0.65330674965473 Functional Gain - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60560038 chr10:60560042 nonsynonymous SNV 0.129 2 25 hm5C_associated_SNPs_100331 0 0 1 0 2 BICC1 chr10:60559954 3'AG 60559954 Downstream 89bp
chr10 60560042 60560042 1 + C A GBM 60560038 + 60560018 60560058 41 ATCACGGGGATCCGTCCATCCAGACAAGTGGGTCTGAGCAG ATCACGGGGATCCGTCCATCCAGAAAAGTGGGTCTGAGCAG < 41bp 0.440859421365867 0.826653374827365 0.34688497 0.41180354 prediction 0.65330674965473 Functional Gain - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60560038 chr10:60560042 nonsynonymous SNV 0.129 2 25 hm5C_associated_SNPs_100331 0 0 1 0 2 BICC1 chr10:60560086 5'GT 60560086 Upstream 45bp
chr5 34808710 34808710 1 + C A THCA 34808706 + 34808686 34808726 41 CAGCGGCTCAGGGCTGCCTTCAAGCTGTGCAGATTCTCTGC CAGCGGCTCAGGGCTGCCTTCAAGATGTGCAGATTCTCTGC < 41bp 0.448663801759541 0.82662929293804 0.39036497 0.3332221 prediction 0.65325858587608 Functional Gain - RAI14 ENSG00000039560 CDS Human protein_coding chr5:34808706 chr5:34808710 nonsynonymous SNV 0.953 0 25 hm5C_associated_SNPs_100332 0 0 1 0 2 RAI14 chr5:34808689 3'AG 34808689 Downstream 22bp
chr5 34808710 34808710 1 + C A THCA 34808706 + 34808686 34808726 41 CAGCGGCTCAGGGCTGCCTTCAAGCTGTGCAGATTCTCTGC CAGCGGCTCAGGGCTGCCTTCAAGATGTGCAGATTCTCTGC < 41bp 0.448663801759541 0.82662929293804 0.39036497 0.3332221 prediction 0.65325858587608 Functional Gain - RAI14 ENSG00000039560 CDS Human protein_coding chr5:34808706 chr5:34808710 nonsynonymous SNV 0.953 0 25 hm5C_associated_SNPs_100332 0 0 1 0 2 RAI14 chr5:34808759 5'GT 34808759 Upstream 50bp
chr7 72754785 72754785 1 + C A PAAD 72754781 + 72754761 72754801 41 TAGCCCTGTGCTATGGAGAGCAGGCTTTGATCATTGACCAA TAGCCCTGTGCTATGGAGAGCAGGATTTGATCATTGACCAA < 41bp 0.458551793656281 0.826608501898522 0.2127684 0.524731 prediction 0.653217003797044 Functional Gain - FKBP6 ENSG00000077800 CDS Human protein_coding chr7:72754781 chr7:72754785 nonsynonymous SNV 0.971 5 25 hm5C_associated_SNPs_100333 0 0 0 2 1 FKBP6 chr7:72754834 5'GT 72754834 Upstream 50bp
chr22 18069933 18069933 1 + C A UCEC 18069929 + 18069909 18069949 41 TCATCAGGGCTCGGCCTCAGCACCCTCCACCTCCAGGTCCT TCATCAGGGCTCGGCCTCAGCACCATCCACCTCCAGGTCCT < 41bp 0.562117240240277 0.888701604992688 0.0062858164 0.029523492 prediction 0.653168729504821 Functional Gain - SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18069929 chr22:18069933 synonymous SNV . 0 25 hm5C_associated_SNPs_100336 0 0 0 0 1 SLC25A18 chr22:18069902 3'AG 18069902 Downstream 32bp
chr3 9785266 9785266 1 + C A rs142213134 9785262 + 9785242 9785282 41 CCCTCCAACCCTACCCCTAGCAGCCGAGGAAGAGCGGCTGG CCCTCCAACCCTACCCCTAGCAGCAGAGGAAGAGCGGCTGG < 41bp 0.441170478205951 0.826566258357213 0.33733696 0.4438006 prediction 0.653132516714426 Functional Gain - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9785262 chr3:9785266 synonymous SNV . 0 25 hm5C_associated_SNPs_100338 0 0 0 0 2 BRPF1 chr3:9785262 3'AG 9785262 Downstream 5bp
chr3 9785266 9785266 1 + C A rs142213134 9785262 + 9785242 9785282 41 CCCTCCAACCCTACCCCTAGCAGCCGAGGAAGAGCGGCTGG CCCTCCAACCCTACCCCTAGCAGCAGAGGAAGAGCGGCTGG < 41bp 0.441170478205951 0.826566258357213 0.33733696 0.4438006 prediction 0.653132516714426 Functional Gain - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9785262 chr3:9785266 synonymous SNV . 0 25 hm5C_associated_SNPs_100338 0 0 0 0 2 BRPF1 chr3:9785265 3'AG 9785265 Downstream 2bp
chr10 12139731 12139731 1 + C A rs80324702 12139727 + 12139707 12139747 41 ATATGCAGAGCACCTCATTGCTGGCGGACTCATGACGCAGG ATATGCAGAGCACCTCATTGCTGGAGGACTCATGACGCAGG < 41bp 0.559923504832246 0.886374194346535 0.18146569 0.60760355 prediction 0.652901379028578 Functional Gain - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12139727 chr10:12139731 synonymous SNV . 0 25 hm5C_associated_SNPs_100342 0 0 1 0 1 DHTKD1 chr10:12139683 3'AG 12139683 Downstream 49bp
chr7 48081042 48081042 1 + C A HNSC 48081038 + 48081018 48081058 41 GAGACTCACACAGCGAGAACCTGCCTGGGACTCGGAGATAC GAGACTCACACAGCGAGAACCTGCATGGGACTCGGAGATAC < 41bp 0.57007376404002 0.896453163107708 0.089600444 0.3730804 prediction 0.652758798135377 Functional Gain - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48081038 chr7:48081042 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_100344 0 0 0 0 1 C7orf57 chr7:48081116 5'GT 48081116 Upstream 75bp
chr2 131976402 131976402 1 + C A UCEC 131976398 + 131976378 131976418 41 GTCCGTGGAGAAGATCTGGACAAGCTCCACAGAGCTGCCTG GTCCGTGGAGAAGATCTGGACAAGATCCACAGAGCTGCCTG < 41bp 0.485172815541858 0.826366200916817 0.11829418 0.18143505 prediction 0.652732401833634 Functional Gain - POTEE ENSG00000188219 CDS Human protein_coding chr2:131976398 chr2:131976402 nonsynonymous SNV 0.724 1 25 hm5C_associated_SNPs_100345 0 0 1 0 1 POTEE chr2:131976496 5'GT 131976496 Upstream 95bp
chr11 62189772 62189772 1 + C A UCEC 62189768 + 62189748 62189788 41 CACACCCTCCAGTTATGAGGCTGCCATGGAACTTTTCAGCC CACACCCTCCAGTTATGAGGCTGCAATGGAACTTTTCAGCC < 41bp 0.434287884555847 0.826340157752579 0.013298184 0.014222354 prediction 0.652680315505157 Functional Gain - SCGB1A1 ENSG00000149021 CDS Human protein_coding chr11:62189768 chr11:62189772 synonymous SNV . 0 25 hm5C_associated_SNPs_100346 0 0 0 0 1 SCGB1A1 chr11:62189693 3'AG 62189693 Downstream 80bp
chr1 158325807 158325807 1 + C A LIHC 158325803 + 158325783 158325823 41 CGAGACATGGTATCTCCGAGCAACCCTGGATGTGGCGGCTG CGAGACATGGTATCTCCGAGCAACACTGGATGTGGCGGCTG < 41bp 0.50843137397306 0.83475071401875 0.17299902 0.22008178 prediction 0.65263868009138 Functional Gain - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325803 chr1:158325807 synonymous SNV . 0 25 hm5C_associated_SNPs_100349 0 0 0 0 1 CD1E chr1:158325895 5'GT 158325895 Upstream 89bp
chr1 110034244 110034244 1 + T G UCEC 110034241 + 110034221 110034261 41 GCCGGCCAGTGAAGGCCAAGCACTGTCAGGCTGGTGCCCCT GCCGGCCAGTGAAGGCCAAGCACGGTCAGGCTGGTGCCCCT < 41bp 0.468153706725402 0.826170804242848 0.07144958 0.31828403 prediction 0.652341608485695 Functional Gain - ATXN7L2 ENSG00000162650 CDS Human protein_coding chr1:110034241 chr1:110034244 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_100354 0 0 0 0 1 ATXN7L2 chr1:110034339 5'GT 110034339 Upstream 96bp
chrX 129546420 129546420 1 + C A CESC 129546416 + 129546396 129546436 41 AGAGCAACCATCCTCTTCGTCACCCAGACGCAAGACAGTAA AGAGCAACCATCCTCTTCGTCACCAAGACGCAAGACAGTAA < 41bp 0.433536946325032 0.826150006548414 0.09190568 0.06186813 prediction 0.652300013096828 Functional Gain - RBMX2 ENSG00000134597 CDS Human protein_coding chrX:129546416 chrX:129546420 synonymous SNV . 0 25 hm5C_associated_SNPs_100355 0 0 1 0 1 RBMX2 chrX:129546335 3'AG 129546335 Downstream 86bp
chr8 27507273 27507273 1 + C A GBM 27507269 + 27507249 27507289 41 TGTGCGTTACAGAAGAGGACCTGGCGGGTGACGACGAGGAC TGTGCGTTACAGAAGAGGACCTGGAGGGTGACGACGAGGAC < 41bp 0.557315126360787 0.883395473811802 0.23803255 0.30033553 prediction 0.65216069490203 Functional Gain - SCARA3 ENSG00000168077 CDS Human protein_coding chr8:27507269 chr8:27507273 nonsynonymous SNV 0.332 0 25 hm5C_associated_SNPs_100358 0 0 1 0 1 SCARA3 chr8:27507219 3'AG 27507219 Downstream 55bp
chr12 122481895 122481895 1 + C A rs144915314 122481891 + 122481871 122481911 41 AGAGCCCAACTCGGCTGTGCCCAGCGACGGCACCGAGGCCA AGAGCCCAACTCGGCTGTGCCCAGAGACGGCACCGAGGCCA < 41bp 0.442486135554129 0.826079109595959 0.097358644 0.44559613 prediction 0.652158219191918 Functional Gain - BCL7A ENSG00000110987 CDS Human protein_coding chr12:122481891 chr12:122481895 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_100359 0 0 1 0 1 BCL7A chr12:122481959 5'GT 122481959 Upstream 65bp
chr20 37632428 37632428 1 + C A GBM 37632424 + 37632404 37632444 41 ACTGTTGTGTCGATGCTCATCGAGCAGGCTCGAGCACTAGC ACTGTTGTGTCGATGCTCATCGAGAAGGCTCGAGCACTAGC < 41bp 0.560351291540179 0.886356380197262 0.3746939 0.511983 prediction 0.652010177314166 Functional Gain - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37632424 chr20:37632428 nonsynonymous SNV 0.896 1 25 hm5C_associated_SNPs_100361 0 0 1 0 1 DHX35 chr20:37632392 3'AG 37632392 Downstream 37bp
chr20 56730549 56730549 1 + C A LUSC 56730545 + 56730525 56730565 41 TGATCAAGTGTGAAGAAGATCTCCCCACCCCAAAGCCCAAA TGATCAAGTGTGAAGAAGATCTCCACACCCCAAAGCCCAAA < 41bp 0.419348109377914 0.826000442978435 0.06204775 0.89761937 prediction 0.65200088595687 Functional Gain - C20orf85 ENSG00000124237 CDS Human protein_coding chr20:56730545 chr20:56730549 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_100362 0 0 0 0 2 C20orf85 chr20:56730524 3'AG 56730524 Downstream 26bp
chr20 56730549 56730549 1 + C A LUSC 56730545 + 56730525 56730565 41 TGATCAAGTGTGAAGAAGATCTCCCCACCCCAAAGCCCAAA TGATCAAGTGTGAAGAAGATCTCCACACCCCAAAGCCCAAA < 41bp 0.419348109377914 0.826000442978435 0.06204775 0.89761937 prediction 0.65200088595687 Functional Gain - C20orf85 ENSG00000124237 CDS Human protein_coding chr20:56730545 chr20:56730549 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_100362 0 0 0 0 2 C20orf85 chr20:56730625 5'GT 56730625 Upstream 77bp
chr11 31653919 31653919 1 + C A PRAD 31653915 + 31653895 31653935 41 TCTTCTGAGAACCTCTCTTTCAGCCTGCATCATCACAATGC TCTTCTGAGAACCTCTCTTTCAGCATGCATCATCACAATGC < 41bp 0.55878865824475 0.884753354115509 0.38009077 0.78650725 prediction 0.651929391741517 Functional Gain - ELP4 ENSG00000109911 CDS Human protein_coding chr11:31653915 chr11:31653919 synonymous SNV . 0 25 hm5C_associated_SNPs_100363 0 0 0 1 1 ELP4 chr11:31653952 5'GT 31653952 Upstream 34bp
chr14 57070542 57070542 1 + C A OV 57070538 + 57070518 57070558 41 TATCTGTGTTTGCAGGCTTTCTGGCTCATCTGCTGGAGGAA TATCTGTGTTTGCAGGCTTTCTGGATCATCTGCTGGAGGAA < 41bp 0.463708483457605 0.825961116452466 0.5638677 0.5502123 prediction 0.651922232904932 Functional Gain - TMEM260 ENSG00000070269 CDS Human protein_coding chr14:57070538 chr14:57070542 synonymous SNV . 0 25 hm5C_associated_SNPs_100364 0 0 0 0 1 TMEM260 chr14:57070533 3'AG 57070533 Downstream 10bp
chr2 32503260 32503260 1 + C A rs564046880 32503256 + 32503236 32503276 41 GGGCCCGCCCCCGGCCTATGCCCCCACTAACGGGGACTTCA GGGCCCGCCCCCGGCCTATGCCCCAACTAACGGGGACTTCA < 41bp 0.465499468635571 0.825774733409526 0.03928387 0.049545974 prediction 0.651549466819052 Functional Gain - YIPF4 ENSG00000119820 CDS Human protein_coding chr2:32503256 chr2:32503260 synonymous SNV . 0 25 hm5C_associated_SNPs_100373 0 0 1 0 1 YIPF4 chr2:32503303 5'GT 32503303 Upstream 44bp
chrX 151821044 151821044 1 + C A LIHC 151821040 + 151821020 151821060 41 TGGAAGACGGAGTCAGCTCTCTCCCCATCACCCCAGCGCAG TGGAAGACGGAGTCAGCTCTCTCCACATCACCCCAGCGCAG < 41bp 0.559112503378047 0.884837860547496 0.25021237 0.91385293 prediction 0.651450714338897 Functional Gain - GABRQ ENSG00000147402 CDS Human other chrX:151821040 chrX:151821044 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_100375 0 0 0 0 1 GABRQ chrX:151821004 3'AG 151821004 Downstream 41bp
chr7 70800599 70800599 1 + C A LUAD 70800595 + 70800575 70800615 41 GGCGGGGTAAAGGGGGCCTTCCGGCTACTCTTTCCCCGGCT GGCGGGGTAAAGGGGGCCTTCCGGATACTCTTTCCCCGGCT < 41bp 0.519619327457872 0.845311694961603 0.9088832 0.9138401 prediction 0.651384735007462 Functional Gain - GALNT17 ENSG00000185274 CDS Human protein_coding chr7:70800595 chr7:70800599 nonsynonymous SNV 0.969 2 25 hm5C_associated_SNPs_100376 0 0 0 0 1 GALNT17 chr7:70800536 3'AG 70800536 Downstream 64bp
chr7 143016916 143016916 1 + C A UCEC 143016912 + 143016892 143016932 41 CATAGGGATGCCCAAGAAGACAGGCTCCAGTTCTACCGTGG CATAGGGATGCCCAAGAAGACAGGATCCAGTTCTACCGTGG < 41bp 0.544059571027403 0.869645737086643 0.57488406 0.63260454 prediction 0.651172332118479 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143016912 chr7:143016916 synonymous SNV . 0 25 hm5C_associated_SNPs_100380 0 0 0 0 2 CLCN1 chr7:143016848 3'AG 143016848 Downstream 69bp
chr7 143016916 143016916 1 + C A UCEC 143016912 + 143016892 143016932 41 CATAGGGATGCCCAAGAAGACAGGCTCCAGTTCTACCGTGG CATAGGGATGCCCAAGAAGACAGGATCCAGTTCTACCGTGG < 41bp 0.544059571027403 0.869645737086643 0.57488406 0.63260454 prediction 0.651172332118479 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143016912 chr7:143016916 synonymous SNV . 0 25 hm5C_associated_SNPs_100380 0 0 0 0 2 CLCN1 chr7:143016968 5'GT 143016968 Upstream 53bp
chr19 55044979 55044979 1 + C A UCEC 55044975 + 55044955 55044995 41 TCAGGACAAGTTCTCCCTGTCAGCCTGGCCGAGCCCTGTGG TCAGGACAAGTTCTCCCTGTCAGCATGGCCGAGCCCTGTGG < 41bp 0.457524375433557 0.825520050195579 0.19803116 0.315626 prediction 0.651040100391158 Functional Gain - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55044975 chr19:55044979 synonymous SNV . 0 25 hm5C_associated_SNPs_100383 0 0 0 0 1 KIR3DX1 chr19:55044951 3'AG 55044951 Downstream 29bp
chr14 78227422 78227422 1 + C A OV 78227418 + 78227398 78227438 41 ATGAAGAAGACTGGTACTCCCAGACCCTTCCGTATCGAGGA ATGAAGAAGACTGGTACTCCCAGAACCTTCCGTATCGAGGA < 41bp 0.534101473645215 0.859538430702118 0.13820249 0.23389441 prediction 0.650873914113806 Functional Gain - C14orf178 ENSG00000197734 CDS Human other chr14:78227418 chr14:78227422 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_100386 0 0 0 0 1 C14orf178;SNW1 chr14:78227459 5'GT 78227459 Upstream 38bp
chr22 25289496 25289496 1 + C A rs564623600 25289492 + 25289472 25289512 41 GAGGGAGCGGGAGTCCCATGCGGCCGCCCTGGCCAAATGCT GAGGGAGCGGGAGTCCCATGCGGCAGCCCTGGCCAAATGCT < 41bp 0.445190813614501 0.825364193157719 0.8954022 0.89508295 prediction 0.650728386315438 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25289492 chr22:25289496 synonymous SNV . 0 25 hm5C_associated_SNPs_100389 0 0 0 0 2 SGSM1 chr22:25289398 3'AG 25289398 Downstream 99bp
chr22 25289496 25289496 1 + C A rs564623600 25289492 + 25289472 25289512 41 GAGGGAGCGGGAGTCCCATGCGGCCGCCCTGGCCAAATGCT GAGGGAGCGGGAGTCCCATGCGGCAGCCCTGGCCAAATGCT < 41bp 0.445190813614501 0.825364193157719 0.8954022 0.89508295 prediction 0.650728386315438 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25289492 chr22:25289496 synonymous SNV . 0 25 hm5C_associated_SNPs_100389 0 0 0 0 2 SGSM1 chr22:25289580 5'GT 25289580 Upstream 85bp
chr7 134916782 134916782 1 + C A COAD 134916778 + 134916758 134916798 41 CTCTTTTTCAATCAAGAAATCAGGCTGTGGCAGGTAAATAA CTCTTTTTCAATCAAGAAATCAGGATGTGGCAGGTAAATAA < 41bp 0.515722325959516 0.84106830602165 0.5366433 0.7901075 prediction 0.650691960124268 Functional Gain - STRA8 ENSG00000146857 CDS Human protein_coding chr7:134916778 chr7:134916782 nonsynonymous SNV 0.124 2 25 hm5C_associated_SNPs_100390 0 0 0 0 1 STRA8 chr7:134916790 5'GT 134916790 Upstream 9bp
chrX 86872977 86872977 1 + C A LUAD 86872973 + 86872953 86872993 41 AAGATACCATTGAAAGTTTGCTGGCTGCAGCTTGTCTTCTG AAGATACCATTGAAAGTTTGCTGGATGCAGCTTGTCTTCTG < 41bp 0.452484895835983 0.825319986295473 0.3239229 0.40495557 prediction 0.650639972590946 Functional Gain - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86872973 chrX:86872977 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_100392 0 0 0 0 1 KLHL4 chrX:86872935 3'AG 86872935 Downstream 43bp
chr1 16375713 16375713 1 + C A UCEC 16375709 + 16375689 16375729 41 ACCTGCGGGGCCTTCATGTTCCGGCTCCTGGCGGTCTTCAA ACCTGCGGGGCCTTCATGTTCCGGATCCTGGCGGTCTTCAA < 41bp 0.544865713094511 0.870166055715741 0.25875944 0.43455246 prediction 0.650600685242459 Functional Gain - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16375709 chr1:16375713 nonsynonymous SNV 0.220 4 25 hm5C_associated_SNPs_100393 0 0 0 0 1 CLCNKB chr1:16375615 3'AG 16375615 Downstream 99bp
chr12 104995722 104995722 1 + C A LUSC 104995718 + 104995698 104995738 41 CCCTTTGGTGTGGACATCTGCTGCCGGAAGGGGTCCCGAAG CCCTTTGGTGTGGACATCTGCTGCAGGAAGGGGTCCCGAAG < 41bp 0.433666547417143 0.82528232937639 0.28320265 0.37525755 prediction 0.650564658752781 Functional Gain - CHST11 ENSG00000171310 CDS Human protein_coding chr12:104995718 chr12:104995722 synonymous SNV . 0 25 hm5C_associated_SNPs_100394 0 0 1 0 2 CHST11 chr12:104995684 3'AG 104995684 Downstream 39bp
chr12 104995722 104995722 1 + C A LUSC 104995718 + 104995698 104995738 41 CCCTTTGGTGTGGACATCTGCTGCCGGAAGGGGTCCCGAAG CCCTTTGGTGTGGACATCTGCTGCAGGAAGGGGTCCCGAAG < 41bp 0.433666547417143 0.82528232937639 0.28320265 0.37525755 prediction 0.650564658752781 Functional Gain - CHST11 ENSG00000171310 CDS Human protein_coding chr12:104995718 chr12:104995722 synonymous SNV . 0 25 hm5C_associated_SNPs_100394 0 0 1 0 2 CHST11 chr12:104995769 5'GT 104995769 Upstream 48bp
chrX 65420462 65420462 1 + C A LUSC 65420458 + 65420438 65420478 41 ACAGTGGCCTGGCACCTGCTCGGCCTGGGCACAGAGACTGA ACAGTGGCCTGGCACCTGCTCGGCATGGGCACAGAGACTGA < 41bp 0.433508161252823 0.82527226770934 0.64808315 0.68841594 prediction 0.65054453541868 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65420458 chrX:65420462 nonsynonymous SNV 0.964 2 25 hm5C_associated_SNPs_100395 0 0 1 0 1 HEPH chrX:65420382 3'AG 65420382 Downstream 81bp
chr22 29442723 29442723 1 + C A HNSC 29442719 + 29442699 29442739 41 TGCAGAATTCCATGAACAGGCTGGCTGTGCAGGCTCTAGAG TGCAGAATTCCATGAACAGGCTGGATGTGCAGGCTCTAGAG < 41bp 0.437187849246306 0.825262065721317 0.15879026 0.20110977 prediction 0.650524131442634 Functional Gain - ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29442719 chr22:29442723 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_100397 0 0 1 0 1 ZNRF3 chr22:29442704 3'AG 29442704 Downstream 20bp
chr3 119101209 119101209 1 + C A STAD 119101205 + 119101185 119101225 41 AGCAGCAAGACCAACATGCACGCCCGGAACCTGGCCCTGGT AGCAGCAAGACCAACATGCACGCCAGGAACCTGGCCCTGGT < 41bp 0.422863265947425 0.825180015987496 0.10945484 0.23168382 prediction 0.650360031974992 Functional Gain - ARHGAP31 ENSG00000031081 CDS Human protein_coding chr3:119101205 chr3:119101209 synonymous SNV . 0 25 hm5C_associated_SNPs_100401 0 0 0 0 2 ARHGAP31 chr3:119101139 3'AG 119101139 Downstream 71bp
chr3 119101209 119101209 1 + C A STAD 119101205 + 119101185 119101225 41 AGCAGCAAGACCAACATGCACGCCCGGAACCTGGCCCTGGT AGCAGCAAGACCAACATGCACGCCAGGAACCTGGCCCTGGT < 41bp 0.422863265947425 0.825180015987496 0.10945484 0.23168382 prediction 0.650360031974992 Functional Gain - ARHGAP31 ENSG00000031081 CDS Human protein_coding chr3:119101205 chr3:119101209 synonymous SNV . 0 25 hm5C_associated_SNPs_100401 0 0 0 0 2 ARHGAP31 chr3:119101246 5'GT 119101246 Upstream 38bp
chr11 60695301 60695301 1 + C A rs575123 60695297 + 60695277 60695317 41 CCGGCTCCATGCCACACACCCTGCCGGCACTGCTCACCAAG CCGGCTCCATGCCACACACCCTGCAGGCACTGCTCACCAAG < 41bp 0.436820624147833 0.825149004201382 0.11063364 0.24876988 prediction 0.650298008402764 Functional Gain - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60695297 chr11:60695301 synonymous SNV . 0 25 hm5C_associated_SNPs_100403 0 0 0 0 1 TMEM132A chr11:60695331 5'GT 60695331 Upstream 31bp
chr17 6930303 6930303 1 + C A LUSC 6930299 + 6930279 6930319 41 TGCGGGCGCACGTGCTGATCCACACCGGGGAGAAGCCCTAC TGCGGGCGCACGTGCTGATCCACAACGGGGAGAAGCCCTAC < 41bp 0.565182292699556 0.890327023363933 0.32862908 0.34262887 prediction 0.650289461328755 Functional Gain - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6930299 chr17:6930303 nonsynonymous SNV 0.852 4 25 hm5C_associated_SNPs_100404 0 0 0 0 1 BCL6B chr17:6930269 3'AG 6930269 Downstream 35bp
chr2 169940017 169940017 1 + T G OV 169940014 + 169939994 169940034 41 GGGAGAGTTATTAATGTCTCCAGTGTTGGAGGTCGCCTTGC GGGAGAGTTATTAATGTCTCCAGGGTTGGAGGTCGCCTTGC < 41bp 0.540502724101817 0.865563320090717 0.21683222 0.9271653 prediction 0.6501211919778 Functional Gain - DHRS9 ENSG00000073737 CDS Human protein_coding chr2:169940014 chr2:169940017 nonsynonymous SNV 0.974 5 24 hm5C_associated_SNPs_100409 0 0 0 0 1 DHRS9 chr2:169940097 5'GT 169940097 Upstream 81bp
chr10 95553033 95553033 1 + C A UCEC 95553029 + 95553009 95553049 41 ATGAGTATGTAGTCATCGCTCAGCCTTTTACTGGAAAATGC ATGAGTATGTAGTCATCGCTCAGCATTTTACTGGAAAATGC < 41bp 0.441433955759891 0.824990386054009 0.18677488 0.08554888 prediction 0.649980772108017 Functional Gain - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95553029 chr10:95553033 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_100411 0 0 0 1 2 LGI1 chr10:95552943 3'AG 95552943 Downstream 91bp
chr10 95553033 95553033 1 + C A UCEC 95553029 + 95553009 95553049 41 ATGAGTATGTAGTCATCGCTCAGCCTTTTACTGGAAAATGC ATGAGTATGTAGTCATCGCTCAGCATTTTACTGGAAAATGC < 41bp 0.441433955759891 0.824990386054009 0.18677488 0.08554888 prediction 0.649980772108017 Functional Gain - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95553029 chr10:95553033 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_100411 0 0 0 1 2 LGI1 chr10:95553107 5'GT 95553107 Upstream 75bp
chr19 50926238 50926238 1 + C A TGCT 50926234 + 50926214 50926254 41 GGGAACCTCGAACTGGCCCCCAGCCTGGAGGCCCCGGGGCC GGGAACCTCGAACTGGCCCCCAGCATGGAGGCCCCGGGGCC < 41bp 0.435959108742253 0.824926888629379 0.26360667 0.50437593 prediction 0.649853777258758 Functional Gain - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50926234 chr19:50926238 nonsynonymous SNV 0.886 0 25 hm5C_associated_SNPs_100413 0 0 0 0 1 SPIB chr19:50926294 5'GT 50926294 Upstream 57bp
chr10 119003505 119003505 1 + T G UCEC 119003502 + 119003482 119003522 41 TCCCCATCATCCCAAGTTATCTGTACAGCATTAAGCATGAG TCCCCATCATCCCAAGTTATCTGGACAGCATTAAGCATGAG < 41bp 0.517034772609046 0.841905994560176 0.07707518 0.16596788 prediction 0.649742443902261 Functional Gain - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119003502 chr10:119003505 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_100416 0 0 0 0 1 SLC18A2 chr10:119003482 3'AG 119003482 Downstream 24bp
chr20 55012398 55012398 1 + C A HNSC 55012394 + 55012374 55012414 41 CTGCCAACCGCCTCCAAATCCTCACGGAGGTCGCTGCAGAC CTGCCAACCGCCTCCAAATCCTCAAGGAGGTCGCTGCAGAC < 41bp 0.573191092687447 0.898045490068314 0.16635674 0.28956595 prediction 0.649708794761733 Functional Gain - CASS4 ENSG00000087589 CDS Human protein_coding chr20:55012394 chr20:55012398 nonsynonymous SNV 0.143 0 25 hm5C_associated_SNPs_100417 0 0 0 0 1 CASS4 chr20:55012480 5'GT 55012480 Upstream 83bp
chr17 29159410 29159410 1 + C A THCA 29159406 + 29159386 29159426 41 GGCGGCTGCAGCTGCTCCGCCTCCCGTGAAGGACTGCGAGA GGCGGCTGCAGCTGCTCCGCCTCCAGTGAAGGACTGCGAGA < 41bp 0.44559099175994 0.824777500934861 0.22357684 0.9359391 prediction 0.649555001869722 Functional Gain - ATAD5 ENSG00000176208 CDS Human protein_coding chr17:29159406 chr17:29159410 synonymous SNV . 0 25 hm5C_associated_SNPs_100420 0 0 1 0 1 ATAD5 chr17:29159431 5'GT 29159431 Upstream 22bp
chr11 114112918 114112918 1 + T G STAD 114112915 + 114112895 114112935 41 ACATGGCCGTCTTCTGTCTGCTGTGTGGGAAGCGCTTCCAG ACATGGCCGTCTTCTGTCTGCTGGGTGGGAAGCGCTTCCAG < 41bp 0.536494819951366 0.861225581767748 0.40119788 0.8411231 prediction 0.649461523632764 Functional Gain - ZBTB16 ENSG00000109906 CDS Human protein_coding chr11:114112915 chr11:114112918 nonsynonymous SNV 0.990 5 24 hm5C_associated_SNPs_100422 0 0 0 0 1 ZBTB16 chr11:114112889 3'AG 114112889 Downstream 30bp
chr3 112992155 112992155 1 + C A LUAD 112992151 + 112992131 112992171 41 GCCGAGAACGAGGTTGGGAGCGCCCATGCCGTAGTCCAGCT GCCGAGAACGAGGTTGGGAGCGCCAATGCCGTAGTCCAGCT < 41bp 0.56074395573356 0.885444372094443 0.369435 0.43764555 prediction 0.649400832721766 Functional Gain - BOC ENSG00000144857 CDS Human protein_coding chr3:112992151 chr3:112992155 nonsynonymous SNV 0.053 2 25 hm5C_associated_SNPs_100424 0 0 1 0 1 BOC chr3:112992188 5'GT 112992188 Upstream 34bp
chr20 31811751 31811751 1 + C A HNSC 31811747 + 31811727 31811767 41 CTAATCAGCGGCAGGAAACACCAGCAGCAGCAAGAGAGCAG CTAATCAGCGGCAGGAAACACCAGAAGCAGCAAGAGAGCAG < 41bp 0.445771125302793 0.824676665723022 0.43113667 0.7168874 prediction 0.649353331446044 Functional Gain - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31811747 chr20:31811751 nonsynonymous SNV 0.083 0 25 hm5C_associated_SNPs_100425 0 0 0 0 1 BPIFA3 chr20:31811767 5'GT 31811767 Upstream 17bp
chr9 134106058 134106058 1 + C A UCEC 134106054 + 134106034 134106074 41 ACACCACATCCTTCGGCACGCTCGCGAGTCAGAATGCCCCC ACACCACATCCTTCGGCACGCTCGAGAGTCAGAATGCCCCC < 41bp 0.442762420604738 0.824640596367577 0.24022624 0.15363848 prediction 0.649281192735153 Functional Gain - NUP214 ENSG00000126883 CDS Human protein_coding chr9:134106054 chr9:134106058 nonsynonymous SNV 0.471 3 25 hm5C_associated_SNPs_100427 0 0 0 0 2 NUP214 chr9:134106017 3'AG 134106017 Downstream 42bp
chr9 134106058 134106058 1 + C A UCEC 134106054 + 134106034 134106074 41 ACACCACATCCTTCGGCACGCTCGCGAGTCAGAATGCCCCC ACACCACATCCTTCGGCACGCTCGAGAGTCAGAATGCCCCC < 41bp 0.442762420604738 0.824640596367577 0.24022624 0.15363848 prediction 0.649281192735153 Functional Gain - NUP214 ENSG00000126883 CDS Human protein_coding chr9:134106054 chr9:134106058 nonsynonymous SNV 0.471 3 25 hm5C_associated_SNPs_100427 0 0 0 0 2 NUP214 chr9:134106156 5'GT 134106156 Upstream 99bp
chr11 44081447 44081447 1 + T G OV 44081444 + 44081424 44081464 41 AGGAGGCTTTGATAGTGAAGCAGTTGGAGGATGCAATGAGG AGGAGGCTTTGATAGTGAAGCAGGTGGAGGATGCAATGAGG < 41bp 0.464278467269663 0.824625272247907 0.4684314 0.8468557 prediction 0.649250544495814 Functional Gain - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44081444 chr11:44081447 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_100429 0 0 0 0 1 ACCSL chr11:44081388 3'AG 44081388 Downstream 60bp
chr14 24530854 24530854 1 + C A ESCA 24530850 + 24530830 24530870 41 TCCGAGGGGCACTGCTGGAGCAAGCAGGACAGGACATTCAG TCCGAGGGGCACTGCTGGAGCAAGAAGGACAGGACATTCAG < 41bp 0.452107850824699 0.824516616034096 0.3668234 0.5671498 prediction 0.649033232068191 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24530850 chr14:24530854 nonsynonymous SNV 0.981 4 25 hm5C_associated_SNPs_100430 0 0 0 0 1 CARMIL3 chr14:24530881 5'GT 24530881 Upstream 28bp
chr11 197587 197587 1 + C A SARC 197583 + 197563 197603 41 TTCATGAAGCACACGCCCACCAAGCTGCGTGCACCGGCCTA TTCATGAAGCACACGCCCACCAAGATGCGTGCACCGGCCTA < 41bp 0.549073995935348 0.873563367099103 0.14178085 0.22197926 prediction 0.64897874232751 Functional Gain - ODF3 ENSG00000177947 CDS Human protein_coding chr11:197583 chr11:197587 nonsynonymous SNV 0.378 0 25 hm5C_associated_SNPs_100431 0 0 0 0 1 ODF3 chr11:197561 3'AG 197561 Downstream 27bp
chr15 65153700 65153700 1 + C A UCEC 65153696 + 65153676 65153716 41 GTAAAGGTGGACAAGAGCTGCGCCCTGGAGCATGTGACACG GTAAAGGTGGACAAGAGCTGCGCCATGGAGCATGTGACACG < 41bp 0.422354926185789 0.82447800351698 0.046762675 0.27669907 prediction 0.648956007033959 Functional Gain - PLEKHO2 ENSG00000241839;ENSG00000249240 CDS Human other chr15:65153696 chr15:65153700 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_100434 0 0 1 0 2 PLEKHO2 chr15:65153676 3'AG 65153676 Downstream 25bp
chr15 65153700 65153700 1 + C A UCEC 65153696 + 65153676 65153716 41 GTAAAGGTGGACAAGAGCTGCGCCCTGGAGCATGTGACACG GTAAAGGTGGACAAGAGCTGCGCCATGGAGCATGTGACACG < 41bp 0.422354926185789 0.82447800351698 0.046762675 0.27669907 prediction 0.648956007033959 Functional Gain - PLEKHO2 ENSG00000241839;ENSG00000249240 CDS Human other chr15:65153696 chr15:65153700 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_100434 0 0 1 0 2 PLEKHO2 chr15:65153774 5'GT 65153774 Upstream 75bp
chr16 2259370 2259370 1 - G T SKCM 2259374 - 2259354 2259394 41 TGTCGGTCTGCTTTTATTACCTCCCAGACTGAGCCCCCGAC TGTCGGTCTGCTTTTATTACCTCCAAGACTGAGCCCCCGAC < 41bp 0.430684765434599 0.824469422232243 0.14667252 0.96353674 prediction 0.648938844464487 Functional Gain - BRICD5 ENSG00000182685 CDS Human protein_coding chr16:2259374 chr16:2259370 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_100436 0 0 1 0 1 BRICD5 chr16:2259457 3'AG 2259457 Downstream 88bp
chr14 24634093 24634093 1 + C A UCEC 24634089 + 24634069 24634109 41 CCTGGAATGCACCCCAGGCTCCACCTGGGCCAGGCCCGCAT CCTGGAATGCACCCCAGGCTCCACATGGGCCAGGCCCGCAT < 41bp 0.439505569692691 0.824394741911585 0.071341366 0.12081757 prediction 0.64878948382317 Functional Gain - IRF9 ENSG00000213928 CDS Human protein_coding chr14:24634089 chr14:24634093 nonsynonymous SNV 0.759 3 25 hm5C_associated_SNPs_100440 0 0 1 0 1 IRF9 chr14:24634164 5'GT 24634164 Upstream 72bp
chr10 43606838 43606838 1 + T G HNSC 43606835 + 43606815 43606855 41 GGCCCAAGTGTGCCGAACTTCACTACATGGTGGTGGCCACC GGCCCAAGTGTGCCGAACTTCACGACATGGTGGTGGCCACC < 41bp 0.547860681466813 0.872122389206936 0.31191128 0.10055503 prediction 0.648523415480245 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43606835 chr10:43606838 nonsynonymous SNV 0.040 2 24 hm5C_associated_SNPs_100449 0 0 0 0 1 RET chr10:43606913 5'GT 43606913 Upstream 76bp
chr11 551229 551229 1 + C A rs201646765 551225 + 551205 551245 41 GGCCGCACACACAGGCCCACCGGCCCCCCCGCGGCTGAGCC GGCCGCACACACAGGCCCACCGGCACCCCCGCGGCTGAGCC < 41bp 0.43730824544932 0.824253785424421 0.22065958 0.34503704 prediction 0.648507570848841 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:551225 chr11:551229 synonymous SNV . 0 25 hm5C_associated_SNPs_100450 0 0 0 0 2 LRRC56 chr11:551131 3'AG 551131 Downstream 99bp
chr11 551229 551229 1 + C A rs201646765 551225 + 551205 551245 41 GGCCGCACACACAGGCCCACCGGCCCCCCCGCGGCTGAGCC GGCCGCACACACAGGCCCACCGGCACCCCCGCGGCTGAGCC < 41bp 0.43730824544932 0.824253785424421 0.22065958 0.34503704 prediction 0.648507570848841 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:551225 chr11:551229 synonymous SNV . 0 25 hm5C_associated_SNPs_100450 0 0 0 0 2 LRRC56 chr11:551302 5'GT 551302 Upstream 74bp
chr1 202273705 202273705 1 + C A LUSC 202273701 + 202273681 202273721 41 CTGCAGGACCCTGACCCGCGCAGGCATCCGGCTGCTCCCAT CTGCAGGACCCTGACCCGCGCAGGAATCCGGCTGCTCCCAT < 41bp 0.54873246869382 0.872913402569331 0.8588289 0.9040164 prediction 0.648361867751023 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202273701 chr1:202273705 synonymous SNV . 0 25 hm5C_associated_SNPs_100453 0 0 0 0 2 LGR6 chr1:202273687 3'AG 202273687 Downstream 19bp
chr1 202273705 202273705 1 + C A LUSC 202273701 + 202273681 202273721 41 CTGCAGGACCCTGACCCGCGCAGGCATCCGGCTGCTCCCAT CTGCAGGACCCTGACCCGCGCAGGAATCCGGCTGCTCCCAT < 41bp 0.54873246869382 0.872913402569331 0.8588289 0.9040164 prediction 0.648361867751023 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202273701 chr1:202273705 synonymous SNV . 0 25 hm5C_associated_SNPs_100453 0 0 0 0 2 LGR6 chr1:202273758 5'GT 202273758 Upstream 54bp
chr1 12169678 12169678 1 + C A OV 12169674 + 12169654 12169694 41 GGCTTCCCCAGGGGTCAGCCCTGCCTGTGCCAGCCCAGAGA GGCTTCCCCAGGGGTCAGCCCTGCATGTGCCAGCCCAGAGA < 41bp 0.419842808595228 0.824157777851709 0.24298775 0.7863609 prediction 0.648315555703418 Functional Gain - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12169674 chr1:12169678 synonymous SNV . 0 25 hm5C_associated_SNPs_100455 0 0 1 0 2 TNFRSF8 chr1:12169623 3'AG 12169623 Downstream 56bp
chr1 12169678 12169678 1 + C A OV 12169674 + 12169654 12169694 41 GGCTTCCCCAGGGGTCAGCCCTGCCTGTGCCAGCCCAGAGA GGCTTCCCCAGGGGTCAGCCCTGCATGTGCCAGCCCAGAGA < 41bp 0.419842808595228 0.824157777851709 0.24298775 0.7863609 prediction 0.648315555703418 Functional Gain - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12169674 chr1:12169678 synonymous SNV . 0 25 hm5C_associated_SNPs_100455 0 0 1 0 2 TNFRSF8 chr1:12169713 5'GT 12169713 Upstream 36bp
chr19 8321589 8321589 1 + C A LUAD 8321585 + 8321565 8321605 41 ATCAGGCTGCCCTTTGATGTCAAGCGCAAGGTGAGGCCAAA ATCAGGCTGCCCTTTGATGTCAAGAGCAAGGTGAGGCCAAA < 41bp 0.551291656423719 0.87538838955169 0.38244012 0.30034068 prediction 0.648193466255942 Functional Gain - CERS4 ENSG00000090661 CDS Human protein_coding chr19:8321585 chr19:8321589 nonsynonymous SNV 0.995 5 25 hm5C_associated_SNPs_100459 0 0 0 0 2 CERS4 chr19:8321502 3'AG 8321502 Downstream 88bp
chr19 8321589 8321589 1 + C A LUAD 8321585 + 8321565 8321605 41 ATCAGGCTGCCCTTTGATGTCAAGCGCAAGGTGAGGCCAAA ATCAGGCTGCCCTTTGATGTCAAGAGCAAGGTGAGGCCAAA < 41bp 0.551291656423719 0.87538838955169 0.38244012 0.30034068 prediction 0.648193466255942 Functional Gain - CERS4 ENSG00000090661 CDS Human protein_coding chr19:8321585 chr19:8321589 nonsynonymous SNV 0.995 5 25 hm5C_associated_SNPs_100459 0 0 0 0 2 CERS4 chr19:8321594 5'GT 8321594 Upstream 6bp
chr12 113348875 113348875 1 + T G ACC 113348872 + 113348852 113348892 41 ACAGGTCAGTTGACTGGCGGCTATAAACCTAACCCCCAAAT ACAGGTCAGTTGACTGGCGGCTAGAAACCTAACCCCCAAAT < 41bp 0.479379942357296 0.824020336632867 0.1921733 0.25532734 prediction 0.648040673265735 Functional Gain - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113348872 chr12:113348875 stopgain 0.001 0 24 hm5C_associated_SNPs_100463 0 0 0 0 1 OAS1 chr12:113348856 3'AG 113348856 Downstream 20bp
chr10 95259963 95259963 1 + C A GBM 95259959 + 95259939 95259979 41 TCACAAGTGGGAAAGGAAAGCTGACTGATAAAGAGAGACAC TCACAAGTGGGAAAGGAAAGCTGAATGATAAAGAGAGACAC < 41bp 0.438758040205917 0.824015937038901 0.2099728 0.16457304 prediction 0.648031874077801 Functional Gain - CEP55 ENSG00000138180 CDS Human protein_coding chr10:95259959 chr10:95259963 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_100464 0 0 1 0 1 CEP55 chr10:95259991 5'GT 95259991 Upstream 29bp
chr20 23350277 23350277 1 + C A COAD 23350273 + 23350253 23350293 41 AAGCAGTTCACCCAGCTCAACGCCCTCCAGCGCCACCGCCG AAGCAGTTCACCCAGCTCAACGCCATCCAGCGCCACCGCCG < 41bp 0.568411944437032 0.89242140975083 0.015412569 0.057884872 prediction 0.648018930627596 Functional Gain - GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350273 chr20:23350277 nonsynonymous SNV 0.984 4 25 hm5C_associated_SNPs_100465 0 0 0 0 1 GZF1 chr20:23350221 3'AG 23350221 Downstream 57bp
chr9 90266467 90266467 1 + C A UCEC 90266463 + 90266443 90266483 41 ACGGACACATTGCCCTTCATCTGGCTGTAAGACGGTGTCAG ACGGACACATTGCCCTTCATCTGGATGTAAGACGGTGTCAG < 41bp 0.552710334077959 0.876661607202274 0.44384572 0.46473688 prediction 0.647902546248631 Functional Gain - DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90266463 chr9:90266467 nonsynonymous SNV 0.884 4 25 hm5C_associated_SNPs_100467 0 0 0 0 1 DAPK1 chr9:90266442 3'AG 90266442 Downstream 26bp
chr16 30941812 30941812 1 + C A COAD 30941808 + 30941788 30941828 41 CCTTGGCTGCTGGATCCGACCACCCCCTGCCCCGGGCCGCC CCTTGGCTGCTGGATCCGACCACCACCTGCCCCGGGCCGCC < 41bp 0.43283687664855 0.823892046366287 0.09910762 0.087173045 prediction 0.647784092732573 Functional Gain - FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30941808 chr16:30941812 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_100470 0 0 1 0 1 FBXL19 chr16:30941905 5'GT 30941905 Upstream 94bp
chr11 93800893 93800893 1 - G T PRAD 93800897 - 93800877 93800917 41 CCTTGTAGGTGGTCGCTGACCTGGCAGGTTATCATCCACTT CCTTGTAGGTGGTCGCTGACCTGGAAGGTTATCATCCACTT < 41bp 0.545156868824266 0.869006772434632 0.30722743 0.17808858 prediction 0.647699807220731 Functional Gain - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93800897 chr11:93800893 nonsynonymous SNV 0.997 5 25 hm5C_associated_SNPs_100471 0 0 0 0 1 HEPHL1 chr11:93800909 3'AG 93800909 Downstream 17bp
chr17 60518026 60518026 1 + C A UCEC 60518022 + 60518002 60518042 41 CGGTGTTTTGCCTTTGTTCACGACCTGTGTGATGAAGAGAA CGGTGTTTTGCCTTTGTTCACGACATGTGTGATGAAGAGAA < 41bp 0.438359250683954 0.823788162163089 0.21299565 0.45213744 prediction 0.647576324326177 Functional Gain - METTL2A ENSG00000087995 CDS Human protein_coding chr17:60518022 chr17:60518026 nonsynonymous SNV 0.985 1 25 hm5C_associated_SNPs_100473 0 0 0 0 2 METTL2A chr17:60517978 3'AG 60517978 Downstream 49bp
chr17 60518026 60518026 1 + C A UCEC 60518022 + 60518002 60518042 41 CGGTGTTTTGCCTTTGTTCACGACCTGTGTGATGAAGAGAA CGGTGTTTTGCCTTTGTTCACGACATGTGTGATGAAGAGAA < 41bp 0.438359250683954 0.823788162163089 0.21299565 0.45213744 prediction 0.647576324326177 Functional Gain - METTL2A ENSG00000087995 CDS Human protein_coding chr17:60518022 chr17:60518026 nonsynonymous SNV 0.985 1 25 hm5C_associated_SNPs_100473 0 0 0 0 2 METTL2A chr17:60518117 5'GT 60518117 Upstream 92bp
chr4 48027167 48027167 1 + T G rs35150964 48027165 + 48027145 48027185 41 TGTCACAGCTGCTGGCTTCTCCTGTGCTCTACACGGACCTG TGTCACAGCTGCTGGCTTCTCCGGTGCTCTACACGGACCTG < 41bp 0.505639016002248 0.829327183556668 0.22798455 0.89603657 prediction 0.64737633510884 Functional Gain - NIPAL1 ENSG00000163293 CDS Human protein_coding chr4:48027165 chr4:48027167 synonymous SNV . 0 23 hm5C_associated_SNPs_100478 0 0 1 0 1 NIPAL1 chr4:48027085 3'AG 48027085 Downstream 83bp
chr3 177257279 177257279 1 + C A rs115721732 177257275 + 177257255 177257295 41 AATGTAAATGCTCCCAGGCCCGGGCAGGTAATTTAAGTGAG AATGTAAATGCTCCCAGGCCCGGGAAGGTAATTTAAGTGAG < 41bp 0.498732021178218 0.823664814809864 0.40951973 0.49210683 prediction 0.647329629619728 Functional Gain - LINC00578 ENSG00000228221 ncRNA_exonic Human lincRNA chr3:177257275 chr3:177257279 . . 0 25 hm5C_associated_SNPs_100479 0 0 0 0 2 LINC00578 chr3:177257183 3'AG 177257183 Downstream 97bp
chr3 177257279 177257279 1 + C A rs115721732 177257275 + 177257255 177257295 41 AATGTAAATGCTCCCAGGCCCGGGCAGGTAATTTAAGTGAG AATGTAAATGCTCCCAGGCCCGGGAAGGTAATTTAAGTGAG < 41bp 0.498732021178218 0.823664814809864 0.40951973 0.49210683 prediction 0.647329629619728 Functional Gain - LINC00578 ENSG00000228221 ncRNA_exonic Human lincRNA chr3:177257275 chr3:177257279 . . 0 25 hm5C_associated_SNPs_100479 0 0 0 0 2 LINC00578 chr3:177257281 5'GT 177257281 Upstream 3bp
chr7 100211131 100211131 1 + C A UCEC 100211127 + 100211107 100211147 41 CGCCATGTGGCACCCATTCCCAGCCACTATGATGTCCAGGA CGCCATGTGGCACCCATTCCCAGCAACTATGATGTCCAGGA < 41bp 0.432477217030469 0.823578570513475 0.35142493 0.58930355 prediction 0.647157141026951 Functional Gain - MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100211127 chr7:100211131 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_100483 0 0 1 0 1 MOSPD3 chr7:100211130 3'AG 100211130 Downstream 2bp
chr16 84485577 84485577 1 + C A STAD 84485573 + 84485553 84485593 41 CTGGGGCGGCTGACGTTTCTCGGTCTTGTGGGCATCATTGA CTGGGGCGGCTGACGTTTCTCGGTATTGTGGGCATCATTGA < 41bp 0.558328091714227 0.881906369184219 0.6948205 0.4419762 prediction 0.647156554939984 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84485573 chr16:84485577 nonsynonymous SNV 0.362 1 25 hm5C_associated_SNPs_100484 0 0 0 0 1 ATP2C2 chr16:84485527 3'AG 84485527 Downstream 51bp
chr5 161576143 161576143 1 + C A STAD 161576139 + 161576119 161576159 41 ACCACTGTCCTGACAATGACCACCCTCAGCACCATTGCCCG ACCACTGTCCTGACAATGACCACCATCAGCACCATTGCCCG < 41bp 0.422948579083555 0.823566914973245 0.044300795 0.08809498 prediction 0.64713382994649 Functional Gain - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161576139 chr5:161576143 nonsynonymous SNV 0.983 4 25 hm5C_associated_SNPs_100485 0 0 0 0 1 GABRG2 chr5:161576114 3'AG 161576114 Downstream 30bp
chr12 58015116 58015116 1 + C A COAD 58015112 + 58015092 58015132 41 CCGAGCCTGTGGTCAAGGCGCTGACCAGCGGGGCCGCGCTG CCGAGCCTGTGGTCAAGGCGCTGAACAGCGGGGCCGCGCTG < 41bp 0.564245790739425 0.887702781469153 0.25631723 0.8686063 prediction 0.646913981459457 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58015112 chr12:58015116 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100489 0 0 0 0 2 SLC26A10 chr12:58015046 3'AG 58015046 Downstream 71bp
chr12 58015116 58015116 1 + C A COAD 58015112 + 58015092 58015132 41 CCGAGCCTGTGGTCAAGGCGCTGACCAGCGGGGCCGCGCTG CCGAGCCTGTGGTCAAGGCGCTGAACAGCGGGGCCGCGCTG < 41bp 0.564245790739425 0.887702781469153 0.25631723 0.8686063 prediction 0.646913981459457 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58015112 chr12:58015116 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100489 0 0 0 0 2 SLC26A10 chr12:58015210 5'GT 58015210 Upstream 95bp
chr4 69964391 69964391 1 + C A rs34661811 69964387 + 69964367 69964407 41 TGGAGGACTCCACTGCAAACCTGCCAAACCCCTGCCTAAGG TGGAGGACTCCACTGCAAACCTGCAAAACCCCTGCCTAAGG < 41bp 0.427337448201313 0.823452617673835 0.15338546 0.26607656 prediction 0.64690523534767 Functional Gain - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69964387 chr4:69964391 synonymous SNV . 0 25 hm5C_associated_SNPs_100490 0 0 0 0 1 UGT2B7 chr4:69964406 5'GT 69964406 Upstream 16bp
chr20 44352622 44352622 1 + C A rs114654740 44352618 + 44352598 44352638 41 ATGTGAAACTTTTGTCTTCTCCGGCTGTAATGGCAACCTTA ATGTGAAACTTTTGTCTTCTCCGGATGTAATGGCAACCTTA < 41bp 0.466348913093325 0.823387204726008 0.85678256 0.94025993 prediction 0.646774409452016 Functional Gain - SPINT4 ENSG00000149651 CDS Human protein_coding chr20:44352618 chr20:44352622 synonymous SNV . 0 25 hm5C_associated_SNPs_100492 0 0 0 0 1 SPINT4 chr20:44352696 5'GT 44352696 Upstream 75bp
chr14 23306080 23306080 1 + C A ESCA 23306076 + 23306056 23306096 41 TCTCCTGCTCCCCCTGCTCACGCTCGGCACCGCGCTCGCCT TCTCCTGCTCCCCCTGCTCACGCTAGGCACCGCGCTCGCCT < 41bp 0.455599154994825 0.823364800377375 0.04550931 0.2684563 prediction 0.646729600754751 Functional Gain - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23306076 chr14:23306080 synonymous SNV . 0 25 hm5C_associated_SNPs_100494 0 0 0 0 1 MMP14 chr14:23306134 5'GT 23306134 Upstream 55bp
chr11 65631078 65631078 1 + C A COAD 65631074 + 65631054 65631094 41 CCTCCTTGCCACTCCAGGGGCGGGCACAGGCCGGAGCTGCT CCTCCTTGCCACTCCAGGGGCGGGAACAGGCCGGAGCTGCT < 41bp 0.451921944794797 0.823361185919524 0.9096576 0.9124927 prediction 0.646722371839048 Functional Gain - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65631074 chr11:65631078 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_100495 0 0 1 0 1 MUS81 chr11:65631071 3'AG 65631071 Downstream 8bp
chr11 66293630 66293630 1 + C A rs143495423 66293626 + 66293606 66293646 41 AGCCTTTGCTTTGGCCGGTACGGGCGGGAGGACAACACCCT AGCCTTTGCTTTGGCCGGTACGGGAGGGAGGACAACACCCT < 41bp 0.559321984587439 0.882563514486173 0.47822788 0.76836264 prediction 0.64648305979747 Functional Gain - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66293626 chr11:66293630 synonymous SNV . 0 25 hm5C_associated_SNPs_100500 0 0 1 0 2 BBS1 chr11:66293594 3'AG 66293594 Downstream 37bp
chr11 66293630 66293630 1 + C A rs143495423 66293626 + 66293606 66293646 41 AGCCTTTGCTTTGGCCGGTACGGGCGGGAGGACAACACCCT AGCCTTTGCTTTGGCCGGTACGGGAGGGAGGACAACACCCT < 41bp 0.559321984587439 0.882563514486173 0.47822788 0.76836264 prediction 0.64648305979747 Functional Gain - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66293626 chr11:66293630 synonymous SNV . 0 25 hm5C_associated_SNPs_100500 0 0 1 0 2 BBS1 chr11:66293663 5'GT 66293663 Upstream 34bp
chr16 23387158 23387158 1 + C A COAD 23387154 + 23387134 23387174 41 CGTGGGGAGAAATACTGCAACAACCGGGACTTCCCAGACTG CGTGGGGAGAAATACTGCAACAACAGGGACTTCCCAGACTG < 41bp 0.429350856185508 0.823212320718295 0.081417054 0.18573692 prediction 0.646424641436589 Functional Gain - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23387154 chr16:23387158 synonymous SNV . 0 25 hm5C_associated_SNPs_100502 0 0 0 0 2 SCNN1B chr16:23387059 3'AG 23387059 Downstream 100bp
chr16 23387158 23387158 1 + C A COAD 23387154 + 23387134 23387174 41 CGTGGGGAGAAATACTGCAACAACCGGGACTTCCCAGACTG CGTGGGGAGAAATACTGCAACAACAGGGACTTCCCAGACTG < 41bp 0.429350856185508 0.823212320718295 0.081417054 0.18573692 prediction 0.646424641436589 Functional Gain - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23387154 chr16:23387158 synonymous SNV . 0 25 hm5C_associated_SNPs_100502 0 0 0 0 2 SCNN1B chr16:23387176 5'GT 23387176 Upstream 19bp
chr7 150710412 150710412 1 - G T SARC 150710416 - 150710396 150710436 41 GTGAGGACTCGGCCAAACACCCCGCGCTGCTGGGCGTTCTG GTGAGGACTCGGCCAAACACCCCGAGCTGCTGGGCGTTCTG < 41bp 0.457093435001405 0.823192525663793 0.15173721 0.19423223 prediction 0.646385051327586 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150710416 chr7:150710412 nonsynonymous SNV 0.965 1 25 hm5C_associated_SNPs_100503 0 0 0 0 1 NOS3 chr7:150710496 3'AG 150710496 Downstream 85bp
chr10 124909146 124909146 1 + C A UCEC 124909142 + 124909122 124909162 41 GCTTGGAGCGCACGCCTTTCCTCTCTCCTTCGCACTCGGAC GCTTGGAGCGCACGCCTTTCCTCTATCCTTCGCACTCGGAC < 41bp 0.436040345375606 0.823175198324076 0.55855423 0.92830384 prediction 0.646350396648152 Functional Gain - HMX2 ENSG00000188816 CDS Human protein_coding chr10:124909142 chr10:124909146 nonsynonymous SNV 0.955 3 25 hm5C_associated_SNPs_100505 0 0 0 0 1 HMX2 chr10:124909086 3'AG 124909086 Downstream 61bp
chr20 2605013 2605013 1 + C A OV 2605009 + 2604989 2605029 41 CTTTGCTTTCCTCGCCAATCCAGGCCTGATCATCCCAGCCA CTTTGCTTTCCTCGCCAATCCAGGACTGATCATCCCAGCCA < 41bp 0.563599641843634 0.886764290146326 0.7769963 0.7704077 prediction 0.646329296605384 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2605009 chr20:2605013 synonymous SNV . 0 25 hm5C_associated_SNPs_100507 0 0 0 0 2 TMC2 chr20:2604917 3'AG 2604917 Downstream 97bp
chr20 2605013 2605013 1 + C A OV 2605009 + 2604989 2605029 41 CTTTGCTTTCCTCGCCAATCCAGGCCTGATCATCCCAGCCA CTTTGCTTTCCTCGCCAATCCAGGACTGATCATCCCAGCCA < 41bp 0.563599641843634 0.886764290146326 0.7769963 0.7704077 prediction 0.646329296605384 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2605009 chr20:2605013 synonymous SNV . 0 25 hm5C_associated_SNPs_100507 0 0 0 0 2 TMC2 chr20:2605042 5'GT 2605042 Upstream 30bp
chr20 53260108 53260108 1 + C A LUAD 53260104 + 53260084 53260124 41 CAGCACAGCACGGGACAGCTCTACCGCTTGCAAGGTAAGCG CAGCACAGCACGGGACAGCTCTACAGCTTGCAAGGTAAGCG < 41bp 0.431509746229966 0.823100041762153 0.090285 0.18123507 prediction 0.646200083524305 Functional Gain - DOK5 ENSG00000101134 CDS Human protein_coding chr20:53260104 chr20:53260108 nonsynonymous SNV 0.965 1 25 hm5C_associated_SNPs_100511 0 0 0 0 1 DOK5 chr20:53260117 5'GT 53260117 Upstream 10bp
chr12 108604049 108604049 1 + C A LUAD 108604045 + 108604025 108604065 41 GGCGCCAACCGCCTCTCTGTCTACCGGCTGCAGCTGGCCCA GGCGCCAACCGCCTCTCTGTCTACAGGCTGCAGCTGGCCCA < 41bp 0.567883190397441 0.890899380203368 0.26732388 0.5876774 prediction 0.646032379611853 Functional Gain - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108604045 chr12:108604049 synonymous SNV . 0 25 hm5C_associated_SNPs_100514 0 0 0 0 1 WSCD2 chr12:108604082 5'GT 108604082 Upstream 34bp
chr17 27067871 27067871 1 + C A COAD 27067867 + 27067847 27067887 41 AAGCTGGGCCTGGACCACCTCTCCCTGGGGGAGGAGCCTGT AAGCTGGGCCTGGACCACCTCTCCATGGGGGAGGAGCCTGT < 41bp 0.406325674109893 0.822949747073127 0.9073553 0.972721 prediction 0.645899494146255 Functional Gain - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27067867 chr17:27067871 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_100515 0 0 1 0 1 NEK8 chr17:27067840 3'AG 27067840 Downstream 32bp
chr12 56530574 56530574 1 + C A LGG 56530570 + 56530550 56530590 41 TGACTTTAGGAGCACTGACGCTGCCTCTGGCCCGCCTGCTG TGACTTTAGGAGCACTGACGCTGCATCTGGCCCGCCTGCTG < 41bp 0.427965904764526 0.822911267413686 0.29861996 0.36008853 prediction 0.645822534827372 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56530570 chr12:56530574 nonsynonymous SNV 0.930 3 25 hm5C_associated_SNPs_100517 0 0 1 0 1 ESYT1 chr12:56530528 3'AG 56530528 Downstream 47bp
chr5 50683541 50683541 1 + C A rs200172777 50683537 + 50683517 50683557 41 AGGGCCAGTCTAGGCGCTGGCGACCCGCTCAGTCCCCTGCA AGGGCCAGTCTAGGCGCTGGCGACACGCTCAGTCCCCTGCA < 41bp 0.559448173927377 0.882341348166237 0.25370577 0.47751278 prediction 0.64578634847772 Functional Gain - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50683537 chr5:50683541 nonsynonymous SNV 0.984 2 25 hm5C_associated_SNPs_100518 0 0 0 0 1 ISL1 chr5:50683583 5'GT 50683583 Upstream 43bp
chr19 35761435 35761435 1 + C A LUSC 35761431 + 35761411 35761451 41 AGGCACGATTTGCCTATTTCCCAGCGTCCAGTGTGGGAGAT AGGCACGATTTGCCTATTTCCCAGAGTCCAGTGTGGGAGAT < 41bp 0.453375066573106 0.822879452598133 0.88870317 0.90685123 prediction 0.645758905196266 Functional Gain - USF2 ENSG00000105698 CDS Human protein_coding chr19:35761431 chr19:35761435 nonsynonymous SNV 0.991 5 25 hm5C_associated_SNPs_100520 0 0 1 0 2 USF2 chr19:35761350 3'AG 35761350 Downstream 86bp
chr19 35761435 35761435 1 + C A LUSC 35761431 + 35761411 35761451 41 AGGCACGATTTGCCTATTTCCCAGCGTCCAGTGTGGGAGAT AGGCACGATTTGCCTATTTCCCAGAGTCCAGTGTGGGAGAT < 41bp 0.453375066573106 0.822879452598133 0.88870317 0.90685123 prediction 0.645758905196266 Functional Gain - USF2 ENSG00000105698 CDS Human protein_coding chr19:35761431 chr19:35761435 nonsynonymous SNV 0.991 5 25 hm5C_associated_SNPs_100520 0 0 1 0 2 USF2 chr19:35761500 5'GT 35761500 Upstream 66bp
chr2 113820090 113820090 1 + C A LUAD 113820086 + 113820066 113820106 41 GAATCCAAGAGCTTCACCTTCTACCGGCGGGACATGGGGCT GAATCCAAGAGCTTCACCTTCTACAGGCGGGACATGGGGCT < 41bp 0.424340817835971 0.822876352823522 0.74094176 0.9275701 prediction 0.645752705647044 Functional Gain - IL36RN ENSG00000136695 CDS Human protein_coding chr2:113820086 chr2:113820090 synonymous SNV . 0 25 hm5C_associated_SNPs_100521 0 0 0 0 1 IL36RN chr2:113820030 3'AG 113820030 Downstream 61bp
chr20 35169894 35169894 1 + C A rs528936233 35169890 + 35169870 35169910 41 CCCGGCCGCCACGCCCCGCCCCCGCCTGGAGTCCAGACCCG CCCGGCCGCCACGCCCCGCCCCCGACTGGAGTCCAGACCCG < 41bp 0.49189198971945 0.822846649496382 0.06576657 0.061377138 prediction 0.645693298992764 Functional Gain - DLGAP4-AS1 ENSG00000232907 ncRNA_intronic Human antisense chr20:35169890 chr20:35169894 . . 0 25 hm5C_associated_SNPs_100523 0 0 0 0 1 DLGAP4-AS1 chr20:35169964 5'GT 35169964 Upstream 71bp
chr12 56620196 56620196 1 + C A UCEC 56620192 + 56620172 56620212 41 GCCTACCACTGGACCCTCTGCTGCCTCTCCAGGTAAATCTG GCCTACCACTGGACCCTCTGCTGCATCTCCAGGTAAATCTG < 41bp 0.418172400007116 0.82281191985165 0.16535985 0.1351912 prediction 0.645623839703299 Functional Gain - NABP2 ENSG00000139579 CDS Human protein_coding chr12:56620192 chr12:56620196 synonymous SNV . 0 25 hm5C_associated_SNPs_100529 0 0 1 0 2 NABP2 chr12:56620140 3'AG 56620140 Downstream 57bp
chr12 56620196 56620196 1 + C A UCEC 56620192 + 56620172 56620212 41 GCCTACCACTGGACCCTCTGCTGCCTCTCCAGGTAAATCTG GCCTACCACTGGACCCTCTGCTGCATCTCCAGGTAAATCTG < 41bp 0.418172400007116 0.82281191985165 0.16535985 0.1351912 prediction 0.645623839703299 Functional Gain - NABP2 ENSG00000139579 CDS Human protein_coding chr12:56620192 chr12:56620196 synonymous SNV . 0 25 hm5C_associated_SNPs_100529 0 0 1 0 2 NABP2 chr12:56620203 5'GT 56620203 Upstream 8bp
chr5 150051349 150051349 1 + C A LUSC 150051345 + 150051325 150051365 41 TGCCAATGGCCCTGAGGGGCCGAACTACCGCTCGGAGCTCC TGCCAATGGCCCTGAGGGGCCGAAATACCGCTCGGAGCTCC < 41bp 0.448580416724751 0.822783031790286 0.045074165 0.09646922 prediction 0.645566063580572 Functional Gain - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150051345 chr5:150051349 nonsynonymous SNV 0.035 2 25 hm5C_associated_SNPs_100530 0 0 0 0 1 MYOZ3 chr5:150051317 3'AG 150051317 Downstream 33bp
chr16 2258560 2258560 1 + C A THCA 2258556 + 2258536 2258576 41 AGCGGCAACCCCGGGGAGTCCTCCCGCGGCTGGATGTGGGG AGCGGCAACCCCGGGGAGTCCTCCAGCGGCTGGATGTGGGG < 41bp 0.56660433527302 0.889356108754948 0.26220644 0.9651244 prediction 0.645503546963856 Functional Gain - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2258556 chr16:2258560 nonsynonymous SNV 0.166 1 25 hm5C_associated_SNPs_100531 0 0 1 0 1 MLST8 chr16:2258614 5'GT 2258614 Upstream 55bp
chrX 114524351 114524351 1 + T G UCEC 114524348 + 114524328 114524368 41 GGCTTCGTTTCGGAAGCTAACGCTTTCTGAAAAAGTGCCGC GGCTTCGTTTCGGAAGCTAACGCGTTCTGAAAAAGTGCCGC < 41bp 0.523192652836822 0.845898823225244 0.25221324 0.55290085 prediction 0.645412340776844 Functional Gain - LUZP4 ENSG00000102021 CDS Human protein_coding chrX:114524348 chrX:114524351 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_100532 0 0 0 0 1 LUZP4 chrX:114524416 5'GT 114524416 Upstream 66bp
chr6 50683290 50683290 1 + C A LUAD 50683286 + 50683266 50683306 41 TCAAAGACTCCTGCCAGGGCCCAGCCTGGGGCTGGCCGCCG TCAAAGACTCCTGCCAGGGCCCAGACTGGGGCTGGCCGCCG < 41bp 0.451014949215919 0.822659142977033 0.050311625 0.09499577 prediction 0.645318285954067 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50683286 chr6:50683290 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_100533 0 0 0 0 1 TFAP2D chr6:50683326 5'GT 50683326 Upstream 37bp
chr12 29486617 29486617 1 + C A rs148289062 29486613 + 29486593 29486633 41 ACTGCCCTCTTCCTTATCGCCTGGCGCCTTCTCATTGCAAG ACTGCCCTCTTCCTTATCGCCTGGAGCCTTCTCATTGCAAG < 41bp 0.460781474920305 0.82256359604429 0.6110182 0.66213006 prediction 0.645127192088581 Functional Gain - FAR2 ENSG00000064763 CDS Human protein_coding chr12:29486613 chr12:29486617 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100538 0 0 0 0 1 FAR2 chr12:29486565 3'AG 29486565 Downstream 53bp
chr1 205039053 205039053 1 + C A CESC 205039049 + 205039029 205039069 41 CTGGCAGACCGCCCGGGTGCCTGGCGCCGATGCCCAGTACT CTGGCAGACCGCCCGGGTGCCTGGAGCCGATGCCCAGTACT < 41bp 0.43912275131933 0.822553909949095 0.555044 0.75490713 prediction 0.645107819898189 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205039049 chr1:205039053 synonymous SNV . 0 25 hm5C_associated_SNPs_100539 0 0 0 0 1 CNTN2 chr1:205038955 3'AG 205038955 Downstream 99bp
chr3 52538860 52538860 1 + C A BLCA 52538856 + 52538836 52538876 41 CGAAGGTGGTGGACGCTGGCCGGGCAGGAGATCACCGTCAC CGAAGGTGGTGGACGCTGGCCGGGAAGGAGATCACCGTCAC < 41bp 0.475246801051894 0.822543863489561 0.6260961 0.64113307 prediction 0.645087726979122 Functional Gain - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52538856 chr3:52538860 nonsynonymous SNV 0.925 1 25 hm5C_associated_SNPs_100540 0 0 0 0 1 STAB1 chr3:52538892 5'GT 52538892 Upstream 33bp
chr8 1574952 1574952 1 + C A LUAD 1574948 + 1574928 1574968 41 AGCGATGTGCCTGTGGGACACAGCCTGGACCCCGCTGCGAA AGCGATGTGCCTGTGGGACACAGCATGGACCCCGCTGCGAA < 41bp 0.434203028499535 0.822534633935281 0.040414035 0.13596302 prediction 0.645069267870562 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1574948 chr8:1574952 nonsynonymous SNV 0.982 4 25 hm5C_associated_SNPs_100543 0 0 0 0 1 DLGAP2 chr8:1574906 3'AG 1574906 Downstream 47bp
chr1 43638021 43638021 1 - A C rs375902406 43638024 - 43638004 43638044 41 TTCAAACGCCGTAGCGGTTCCTATAGCAACGACAAACCGGA TTCAAACGCCGTAGCGGTTCCTAGAGCAACGACAAACCGGA < 41bp 0.46523415880955 0.82251665354285 0.25277057 0.29008213 prediction 0.645033307085699 Functional Gain - EBNA1BP2 ENSG00000117395 CDS Human protein_coding chr1:43638024 chr1:43638021 stopgain 0.995 0 24 hm5C_associated_SNPs_100544 0 0 0 0 2 EBNA1BP2 chr1:43637951 5'GT 43637951 Upstream 71bp
chr1 43638021 43638021 1 - A C rs375902406 43638024 - 43638004 43638044 41 TTCAAACGCCGTAGCGGTTCCTATAGCAACGACAAACCGGA TTCAAACGCCGTAGCGGTTCCTAGAGCAACGACAAACCGGA < 41bp 0.46523415880955 0.82251665354285 0.25277057 0.29008213 prediction 0.645033307085699 Functional Gain - EBNA1BP2 ENSG00000117395 CDS Human other chr1:43638024 chr1:43638021 stopgain 0.995 0 24 hm5C_associated_SNPs_100544 0 0 0 0 2 CFAP57;EBNA1BP2 chr1:43638099 3'AG 43638099 Downstream 79bp
chr19 51361384 51361384 1 + T G PRAD 51361381 + 51361361 51361401 41 AGCTTCCCACACCCGCTCTACGATATGAGCCTCCTGAAGAA AGCTTCCCACACCCGCTCTACGAGATGAGCCTCCTGAAGAA < 41bp 0.55356322844462 0.87600094146158 0.04164028 0.29814276 prediction 0.644875426033921 Functional Gain - KLK3 ENSG00000142515 CDS Human protein_coding chr19:51361381 chr19:51361384 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_100548 0 0 0 0 1 KLK3 chr19:51361285 3'AG 51361285 Downstream 100bp
chr12 30949066 30949066 1 + T G rs564733186 30949063 + 30949043 30949083 41 ACCGCTCCGGGTGTCCTCCCCAGTGCGCCGCGATTTTTGTG ACCGCTCCGGGTGTCCTCCCCAGGGCGCCGCGATTTTTGTG < 41bp 0.524024816704061 0.846400385853971 0.5678234 0.9299567 prediction 0.644751138299819 Functional Gain - LINC00941 ENSG00000235884 ncRNA_exonic Human lincRNA chr12:30949063 chr12:30949066 . . 0 24 hm5C_associated_SNPs_100551 0 0 0 0 1 LINC00941 chr12:30949150 5'GT 30949150 Upstream 85bp
chr8 144296932 144296932 1 + C A LUAD 144296928 + 144296908 144296948 41 TGCAAGTCCCTGCCCAGGGACGAGCGCTGCAACCTGACGCA TGCAAGTCCCTGCCCAGGGACGAGAGCTGCAACCTGACGCA < 41bp 0.445718823273179 0.822346417338662 0.4402496 0.9003569 prediction 0.644692834677324 Functional Gain - GPIHBP1 ENSG00000182851 CDS Human other chr8:144296928 chr8:144296932 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_100552 0 0 0 0 2 GPIHBP1 chr8:144296888 3'AG 144296888 Downstream 45bp
chr8 144296932 144296932 1 + C A LUAD 144296928 + 144296908 144296948 41 TGCAAGTCCCTGCCCAGGGACGAGCGCTGCAACCTGACGCA TGCAAGTCCCTGCCCAGGGACGAGAGCTGCAACCTGACGCA < 41bp 0.445718823273179 0.822346417338662 0.4402496 0.9003569 prediction 0.644692834677324 Functional Gain - GPIHBP1 ENSG00000182851 CDS Human other chr8:144296928 chr8:144296932 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_100552 0 0 0 0 2 GPIHBP1 chr8:144297001 5'GT 144297001 Upstream 70bp
chr8 92307853 92307853 1 + C A LUSC 92307849 + 92307829 92307869 41 TCTCACCACACAGAGTAACACAAGCGTGCTGGGCTTATCCG TCTCACCACACAGAGTAACACAAGAGTGCTGGGCTTATCCG < 41bp 0.556769707058043 0.879058297704486 0.41128623 0.5305898 prediction 0.644577181292886 Functional Gain - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92307849 chr8:92307853 nonsynonymous SNV 0.368 2 25 hm5C_associated_SNPs_100554 0 0 0 0 2 SLC26A7 chr8:92307759 3'AG 92307759 Downstream 95bp
chr8 92307853 92307853 1 + C A LUSC 92307849 + 92307829 92307869 41 TCTCACCACACAGAGTAACACAAGCGTGCTGGGCTTATCCG TCTCACCACACAGAGTAACACAAGAGTGCTGGGCTTATCCG < 41bp 0.556769707058043 0.879058297704486 0.41128623 0.5305898 prediction 0.644577181292886 Functional Gain - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92307849 chr8:92307853 nonsynonymous SNV 0.368 2 25 hm5C_associated_SNPs_100554 0 0 0 0 2 SLC26A7 chr8:92307931 5'GT 92307931 Upstream 79bp
chr17 4439403 4439403 1 + C A rs138268297 4439399 + 4439379 4439419 41 CATCCCCACGCGGCGCGCCACTGCCGTGGCCTTGCAGAGCT CATCCCCACGCGGCGCGCCACTGCAGTGGCCTTGCAGAGCT < 41bp 0.567670690545822 0.889941086608359 0.04745558 0.3785981 prediction 0.644540792125075 Functional Gain - SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4439399 chr17:4439403 synonymous SNV . 0 25 hm5C_associated_SNPs_100555 0 0 0 0 2 SPNS2 chr17:4439371 3'AG 4439371 Downstream 33bp
chr17 4439403 4439403 1 + C A rs138268297 4439399 + 4439379 4439419 41 CATCCCCACGCGGCGCGCCACTGCCGTGGCCTTGCAGAGCT CATCCCCACGCGGCGCGCCACTGCAGTGGCCTTGCAGAGCT < 41bp 0.567670690545822 0.889941086608359 0.04745558 0.3785981 prediction 0.644540792125075 Functional Gain - SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4439399 chr17:4439403 synonymous SNV . 0 25 hm5C_associated_SNPs_100555 0 0 0 0 2 SPNS2 chr17:4439469 5'GT 4439469 Upstream 67bp
chr7 140125756 140125756 1 + C A UCEC 140125752 + 140125732 140125772 41 TGCACACTGGCTGAGAAGTACGGCCTCCTGGCCGTTTTGGA TGCACACTGGCTGAGAAGTACGGCATCCTGGCCGTTTTGGA < 41bp 0.435937187543936 0.822237922420993 0.32845867 0.3146924 prediction 0.644475844841986 Functional Gain - RAB19 ENSG00000146955 CDS Human protein_coding chr7:140125752 chr7:140125756 nonsynonymous SNV 0.957 1 25 hm5C_associated_SNPs_100556 0 0 0 0 1 RAB19 chr7:140125682 3'AG 140125682 Downstream 75bp
chr1 10689675 10689675 1 + C A SKCM 10689671 + 10689651 10689691 41 ACCGTCACCCTCCAGCCCTGCGGCCGTGAACCACCACAGCA ACCGTCACCCTCCAGCCCTGCGGCAGTGAACCACCACAGCA < 41bp 0.450068893789912 0.822193779088194 0.07789862 0.23397139 prediction 0.644387558176389 Functional Gain - PEX14 ENSG00000142655 CDS Human protein_coding chr1:10689671 chr1:10689675 synonymous SNV . 0 25 hm5C_associated_SNPs_100558 0 0 0 0 1 PEX14 chr1:10689588 3'AG 10689588 Downstream 88bp
chr16 72142224 72142224 1 + T G COAD 72142221 + 72142201 72142241 41 GTTTACCTGCAGTGGAAGAACAATAATTACTCCACCATCTG GTTTACCTGCAGTGGAAGAACAAGAATTACTCCACCATCTG < 41bp 0.459677727295596 0.822162415003445 0.24872923 0.8934271 prediction 0.644324830006891 Functional Gain - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72142221 chr16:72142224 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_100560 0 0 1 0 1 DHX38 chr16:72142281 5'GT 72142281 Upstream 58bp
chr19 55220848 55220848 1 + C A LUSC 55220844 + 55220824 55220864 41 CCACAGAAAACCCACTCTCTCAGCCCTGCCGAGCCCTGTGG CCACAGAAAACCCACTCTCTCAGCACTGCCGAGCCCTGTGG < 41bp 0.501847614712689 0.823997299157382 0.2753513 0.20798671 prediction 0.644299368889386 Functional Gain - LILRP2 ENSG00000170858 ncRNA_exonic Human transcribed_processed_pseudogene chr19:55220844 chr19:55220848 . . 0 25 hm5C_associated_SNPs_100561 0 0 0 0 1 LILRP2 chr19:55220820 3'AG 55220820 Downstream 29bp
chr19 42354622 42354622 1 + C A STAD 42354618 + 42354598 42354638 41 CTGGAGCCTCGTGCCTGGCCCGGACATCTGGTCCCTCAGAG CTGGAGCCTCGTGCCTGGCCCGGAAATCTGGTCCCTCAGAG < 41bp 0.453027234420511 0.822114665037989 0.46895427 0.65638095 prediction 0.644229330075978 Functional Gain - DMRTC2 ENSG00000142025 CDS Human protein_coding chr19:42354618 chr19:42354622 nonsynonymous SNV 0.276 1 25 hm5C_associated_SNPs_100562 0 0 0 0 1 DMRTC2 chr19:42354594 3'AG 42354594 Downstream 29bp
chr7 20793027 20793027 1 + C A rs148088276 20793023 + 20793003 20793043 41 ACTGAAAGGAGCACAGCTTTCTGGCGGCCAGAAACAAAGAC ACTGAAAGGAGCACAGCTTTCTGGAGGCCAGAAACAAAGAC < 41bp 0.554315874608208 0.876397239601496 0.24559963 0.25633523 prediction 0.644162729986577 Functional Gain - ABCB5 ENSG00000004846 CDS Human protein_coding chr7:20793023 chr7:20793027 synonymous SNV . 0 25 hm5C_associated_SNPs_100564 0 0 0 0 1 ABCB5 chr7:20792983 3'AG 20792983 Downstream 45bp
chr1 156594455 156594455 1 + C A LIHC 156594451 + 156594431 156594471 41 CTGCTCGAGGGCTCCGTGCGCTACCCTGTGCTCACCGCACG CTGCTCGAGGGCTCCGTGCGCTACACTGTGCTCACCGCACG < 41bp 0.558455211198616 0.880528905118525 0.08169529 0.101450205 prediction 0.644147387839819 Functional Gain - HAPLN2 ENSG00000132702 CDS Human protein_coding chr1:156594451 chr1:156594455 nonsynonymous SNV 0.919 4 25 hm5C_associated_SNPs_100565 0 0 1 0 1 HAPLN2 chr1:156594393 3'AG 156594393 Downstream 63bp
chr21 45846599 45846599 1 + C A rs530123792 45846595 + 45846575 45846615 41 CACGGCAGAGAGGAAGGACGCGGCCGCCATGGACCCCATGG CACGGCAGAGAGGAAGGACGCGGCAGCCATGGACCCCATGG < 41bp 0.449428338972803 0.821963087498237 0.45577866 0.5310784 prediction 0.643926174996475 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45846595 chr21:45846599 synonymous SNV . 0 25 hm5C_associated_SNPs_100571 0 0 0 0 2 TRPM2 chr21:45846543 3'AG 45846543 Downstream 57bp
chr21 45846599 45846599 1 + C A rs530123792 45846595 + 45846575 45846615 41 CACGGCAGAGAGGAAGGACGCGGCCGCCATGGACCCCATGG CACGGCAGAGAGGAAGGACGCGGCAGCCATGGACCCCATGG < 41bp 0.449428338972803 0.821963087498237 0.45577866 0.5310784 prediction 0.643926174996475 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45846595 chr21:45846599 synonymous SNV . 0 25 hm5C_associated_SNPs_100571 0 0 0 0 2 TRPM2 chr21:45846583 3'AG 45846583 Downstream 17bp
chr2 113819753 113819753 1 + C A SKCM 113819749 + 113819729 113819769 41 GTGGCTGGATGCCAGCCTGTCCCCCGTCATCCTGGGTGTCC GTGGCTGGATGCCAGCCTGTCCCCAGTCATCCTGGGTGTCC < 41bp 0.425633199044779 0.821914604701319 0.045858562 0.039841056 prediction 0.643829209402638 Functional Gain - IL36RN ENSG00000136695 CDS Human protein_coding chr2:113819749 chr2:113819753 synonymous SNV . 0 25 hm5C_associated_SNPs_100574 0 0 0 0 2 IL36RN chr2:113819701 3'AG 113819701 Downstream 53bp
chr2 113819753 113819753 1 + C A SKCM 113819749 + 113819729 113819769 41 GTGGCTGGATGCCAGCCTGTCCCCCGTCATCCTGGGTGTCC GTGGCTGGATGCCAGCCTGTCCCCAGTCATCCTGGGTGTCC < 41bp 0.425633199044779 0.821914604701319 0.045858562 0.039841056 prediction 0.643829209402638 Functional Gain - IL36RN ENSG00000136695 CDS Human protein_coding chr2:113819749 chr2:113819753 synonymous SNV . 0 25 hm5C_associated_SNPs_100574 0 0 0 0 2 IL36RN chr2:113819828 5'GT 113819828 Upstream 76bp
chr1 65129424 65129424 1 + T G PAAD 65129421 + 65129401 65129441 41 GCTGGCAGCTTTTCCTCCCCCTATGAGCACCTCAGCCAGCC GCTGGCAGCTTTTCCTCCCCCTAGGAGCACCTCAGCCAGCC < 41bp 0.465349947597809 0.821882948850776 0.10867962 0.23710144 prediction 0.643765897701553 Functional Gain - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65129421 chr1:65129424 stopgain 0.989 1 24 hm5C_associated_SNPs_100577 0 0 0 0 2 CACHD1 chr1:65129378 3'AG 65129378 Downstream 47bp
chr1 65129424 65129424 1 + T G PAAD 65129421 + 65129401 65129441 41 GCTGGCAGCTTTTCCTCCCCCTATGAGCACCTCAGCCAGCC GCTGGCAGCTTTTCCTCCCCCTAGGAGCACCTCAGCCAGCC < 41bp 0.465349947597809 0.821882948850776 0.10867962 0.23710144 prediction 0.643765897701553 Functional Gain - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65129421 chr1:65129424 stopgain 0.989 1 24 hm5C_associated_SNPs_100577 0 0 0 0 2 CACHD1 chr1:65129520 5'GT 65129520 Upstream 97bp
chr16 30035142 30035142 1 + C A LUSC 30035138 + 30035118 30035158 41 CTTCTTCGATTATCCGGACTCAGACCAAGCCAGGCTGCTGG CTTCTTCGATTATCCGGACTCAGAACAAGCCAGGCTGCTGG < 41bp 0.46168291333308 0.821854910409867 0.42401916 0.24927661 prediction 0.643709820819733 Functional Gain - C16orf92 ENSG00000167194 CDS Human protein_coding chr16:30035138 chr16:30035142 nonsynonymous SNV 0.794 4 25 hm5C_associated_SNPs_100579 0 0 0 0 2 C16orf92 chr16:30035048 3'AG 30035048 Downstream 95bp
chr16 30035142 30035142 1 + C A LUSC 30035138 + 30035118 30035158 41 CTTCTTCGATTATCCGGACTCAGACCAAGCCAGGCTGCTGG CTTCTTCGATTATCCGGACTCAGAACAAGCCAGGCTGCTGG < 41bp 0.46168291333308 0.821854910409867 0.42401916 0.24927661 prediction 0.643709820819733 Functional Gain - C16orf92 ENSG00000167194 CDS Human protein_coding chr16:30035138 chr16:30035142 nonsynonymous SNV 0.794 4 25 hm5C_associated_SNPs_100579 0 0 0 0 2 C16orf92 chr16:30035206 5'GT 30035206 Upstream 65bp
chr6 405027 405027 1 + C A rs568315642 405023 + 405003 405043 41 TGTGGGCTTCTACAGAGCTGCAAGCGTTTGCTCACCACGGC TGTGGGCTTCTACAGAGCTGCAAGAGTTTGCTCACCACGGC < 41bp 0.458077947526763 0.82182625601836 0.55222815 0.5140168 prediction 0.64365251203672 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:405023 chr6:405027 nonsynonymous SNV 0.245 1 25 hm5C_associated_SNPs_100581 0 0 0 0 1 IRF4 chr6:405018 3'AG 405018 Downstream 10bp
chr20 31873889 31873889 1 + C A KIRC 31873885 + 31873865 31873905 41 CTGACACCTGGGAAGATGGCCGGCCCGTGGACCTTCACCCT CTGACACCTGGGAAGATGGCCGGCACGTGGACCTTCACCCT < 41bp 0.449506283070622 0.821799863288955 0.17031538 0.40264368 prediction 0.643599726577909 Functional Gain - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31873885 chr20:31873889 nonsynonymous SNV 0.205 1 25 hm5C_associated_SNPs_100585 0 0 0 0 1 BPIFB1 chr20:31873839 3'AG 31873839 Downstream 51bp
chr14 105397270 105397270 1 + C A rs143703446 105397266 + 105397246 105397286 41 CTTTGATGGGGTGCCCACCACTGCCTACTTCTCAGTAAGAC CTTTGATGGGGTGCCCACCACTGCATACTTCTCAGTAAGAC < 41bp 0.422877957294675 0.821763631890508 0.19412723 0.5780739 prediction 0.643527263781016 Functional Gain - PLD4 ENSG00000166428 CDS Human protein_coding chr14:105397266 chr14:105397270 synonymous SNV . 0 25 hm5C_associated_SNPs_100588 0 0 0 0 1 PLD4 chr14:105397279 5'GT 105397279 Upstream 10bp
chr8 37996519 37996519 1 + C A CHOL 37996515 + 37996495 37996535 41 GCTGGGGCGCCGTGGTAGAGCACACCCTGGCTGACGTCTTG GCTGGGGCGCCGTGGTAGAGCACAACCTGGCTGACGTCTTG < 41bp 0.447621714958865 0.821757017212708 0.040037185 0.06993401 prediction 0.643514034425416 Functional Gain - ASH2L ENSG00000129691 CDS Human protein_coding chr8:37996515 chr8:37996519 nonsynonymous SNV 0.452 4 25 hm5C_associated_SNPs_100589 0 0 1 0 1 ASH2L chr8:37996482 3'AG 37996482 Downstream 38bp
chr9 34977182 34977182 1 + C A SKCM 34977178 + 34977158 34977198 41 ACCGTCAGTGAGGCAGAGTGCCGCCGGGCCCAGCACTCTTG ACCGTCAGTGAGGCAGAGTGCCGCAGGGCCCAGCACTCTTG < 41bp 0.435575625948477 0.821703643454601 0.330399 0.338876 prediction 0.643407286909202 Functional Gain - PHF24 ENSG00000122733 CDS Human protein_coding chr9:34977178 chr9:34977182 synonymous SNV . 0 25 hm5C_associated_SNPs_100591 0 0 0 0 1 PHF24 chr9:34977240 5'GT 34977240 Upstream 59bp
chr10 135053272 135053272 1 + C A LUAD 135053268 + 135053248 135053288 41 CGCACCTTGGAGGGCGTCTTCCAGCACCACCAGTACCTGAG CGCACCTTGGAGGGCGTCTTCCAGAACCACCAGTACCTGAG < 41bp 0.442359706822762 0.821688350703524 0.33538818 0.84398705 prediction 0.643376701407048 Functional Gain - VENTX ENSG00000151650 CDS Human protein_coding chr10:135053268 chr10:135053272 nonsynonymous SNV 0.030 1 25 hm5C_associated_SNPs_100592 0 0 0 0 1 VENTX chr10:135053340 5'GT 135053340 Upstream 69bp
chr19 4234688 4234688 1 + T G PRAD 4234686 + 4234666 4234706 41 AAGCCCGACCCTCCAGAAGGCGTGCGCCTAAGCCCCCTCGC AAGCCCGACCCTCCAGAAGGCGGGCGCCTAAGCCCCCTCGC < 41bp 0.483972145252211 0.821613422338146 0.1538626 0.932694 prediction 0.643226844676292 Functional Gain - EBI3 ENSG00000105246 CDS Human protein_coding chr19:4234686 chr19:4234688 nonsynonymous SNV 0.143 3 23 hm5C_associated_SNPs_100596 0 0 0 0 1 EBI3 chr19:4234664 3'AG 4234664 Downstream 25bp
chr19 1083225 1083225 1 + C A COAD 1083221 + 1083201 1083241 41 GGCCCACGCTGCTTCGGCCACGGCCCACCGAGGCCACCGTG GGCCCACGCTGCTTCGGCCACGGCACACCGAGGCCACCGTG < 41bp 0.428767356078019 0.821611975185999 0.5373667 0.44517574 prediction 0.643223950371997 Functional Gain - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1083221 chr19:1083225 nonsynonymous SNV 0.656 3 25 hm5C_associated_SNPs_100597 0 0 0 0 1 ARHGAP45 chr19:1083142 3'AG 1083142 Downstream 84bp
chr3 52281754 52281754 1 + C A STAD 52281750 + 52281730 52281770 41 AGGCCAGATGGGCGGCTGCACAGCCCTGGTGGCTGTGTCCC AGGCCAGATGGGCGGCTGCACAGCACTGGTGGCTGTGTCCC < 41bp 0.56419663425731 0.885805279954818 0.28273743 0.31770962 prediction 0.643217291395015 Functional Gain - PPM1M ENSG00000164088 CDS Human protein_coding chr3:52281750 chr3:52281754 synonymous SNV . 0 25 hm5C_associated_SNPs_100598 0 0 0 0 2 PPM1M chr3:52281698 3'AG 52281698 Downstream 57bp
chr3 52281754 52281754 1 + C A STAD 52281750 + 52281730 52281770 41 AGGCCAGATGGGCGGCTGCACAGCCCTGGTGGCTGTGTCCC AGGCCAGATGGGCGGCTGCACAGCACTGGTGGCTGTGTCCC < 41bp 0.56419663425731 0.885805279954818 0.28273743 0.31770962 prediction 0.643217291395015 Functional Gain - PPM1M ENSG00000164088 CDS Human protein_coding chr3:52281750 chr3:52281754 synonymous SNV . 0 25 hm5C_associated_SNPs_100598 0 0 0 0 2 PPM1M chr3:52281810 5'GT 52281810 Upstream 57bp
chr2 241564980 241564980 1 + C A rs13019955 241564976 + 241564956 241564996 41 CTCCACCCGGGAGGCCAAAGCTGCCTGCAGGTCAGTGCCGC CTCCACCCGGGAGGCCAAAGCTGCATGCAGGTCAGTGCCGC < 41bp 0.501807443418999 0.823384494580283 0.21747121 0.25291675 prediction 0.643154102322568 Functional Gain - GPR35 ENSG00000178623 UTR5 Human protein_coding chr2:241564976 chr2:241564980 . . 0 25 hm5C_associated_SNPs_100600 0 0 1 0 1 GPR35 chr2:241564985 5'GT 241564985 Upstream 6bp
chr6 52546712 52546712 1 + T G UCEC 52546709 + 52546689 52546729 41 AACGAGATGTAAAAGTGTCACTGTGTAAGTAAGGCATTTTT AACGAGATGTAAAAGTGTCACTGGGTAAGTAAGGCATTTTT < 41bp 0.473879525817983 0.821438278611551 0.021723568 0.16718796 prediction 0.642876557223102 Functional Gain - TMEM14A ENSG00000096092 CDS Human protein_coding chr6:52546709 chr6:52546712 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_100605 0 0 0 0 1 TMEM14A chr6:52546712 5'GT 52546712 Upstream 1bp
chr1 32680429 32680429 1 + C A LUAD 32680425 + 32680405 32680445 41 GCCACAGGGCCCAGGTAACCCAGCCCTCTCCAAAGGAACCA GCCACAGGGCCCAGGTAACCCAGCACTCTCCAAAGGAACCA < 41bp 0.562849466351804 0.884037334576117 0.19725117 0.22665644 prediction 0.642375736448627 Functional Gain - DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32680425 chr1:32680429 nonsynonymous SNV 0.643 2 25 hm5C_associated_SNPs_100613 0 0 0 0 1 DCDC2B chr1:32680398 3'AG 32680398 Downstream 32bp
chr6 348223 348223 1 + C A rs370002831 348219 + 348199 348239 41 TGGGAGATCCTGTGCCAACCCCAACGTGGGCTTCCAGAGAC TGGGAGATCCTGTGCCAACCCCAAAGTGGGCTTCCAGAGAC < 41bp 0.428947777676658 0.821171867393186 0.15807581 0.35774487 prediction 0.642343734786373 Functional Gain - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348219 chr6:348223 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_100616 0 0 1 0 1 DUSP22 chr6:348274 5'GT 348274 Upstream 52bp
chr1 210577856 210577856 1 + C A UCEC 210577852 + 210577832 210577872 41 GAGTACTACCTGCTGCAGTTCACGCTGACCGTTCGCTGCCT GAGTACTACCTGCTGCAGTTCACGATGACCGTTCGCTGCCT < 41bp 0.450725150341275 0.821162429095863 0.69447076 0.7262052 prediction 0.642324858191725 Functional Gain - HHAT ENSG00000054392 CDS Human protein_coding chr1:210577852 chr1:210577856 nonsynonymous SNV 0.916 0 25 hm5C_associated_SNPs_100617 0 0 0 0 1 HHAT chr1:210577808 3'AG 210577808 Downstream 49bp
chr2 95944760 95944760 1 + C A PRAD 95944756 + 95944736 95944776 41 TGAAGAAGGCAGTGGCCCAGCAGCCGGAAGGGGTGAGGACA TGAAGAAGGCAGTGGCCCAGCAGCAGGAAGGGGTGAGGACA < 41bp 0.441545833914042 0.821125590850049 0.41712922 0.37137735 prediction 0.642251181700097 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95944756 chr2:95944760 nonsynonymous SNV 0.636 1 25 hm5C_associated_SNPs_100619 0 0 0 0 1 PROM2 chr2:95944733 3'AG 95944733 Downstream 28bp
chr16 29690454 29690454 1 + C A rs537784342 29690450 + 29690430 29690470 41 TCCCTCCACAGTCCCACCCCCAGCCTGGGGCCTCTGGGAGC TCCCTCCACAGTCCCACCCCCAGCATGGGGCCTCTGGGAGC < 41bp 0.485774726950288 0.821060799172108 0.20346221 0.22454879 prediction 0.642121598344215 Functional Gain - QPRT ENSG00000103485 UTR5 Human protein_coding chr16:29690450 chr16:29690454 . . 0 25 hm5C_associated_SNPs_100625 0 0 0 0 1 QPRT chr16:29690531 5'GT 29690531 Upstream 78bp
chr20 58645071 58645071 1 + C A HNSC 58645067 + 58645047 58645087 41 GCACAGCCCTTATTGGCAGGCAGACGGCTACGGGCACAGCC GCACAGCCCTTATTGGCAGGCAGAAGGCTACGGGCACAGCC < 41bp 0.535808748986999 0.856825511520899 0.53150904 0.79600614 prediction 0.6420335250678 Functional Gain - C20orf197 ENSG00000176659 CDS Human lincRNA chr20:58645067 chr20:58645071 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_100628 0 0 0 0 1 C20orf197 chr20:58645098 5'GT 58645098 Upstream 28bp
chr19 46262286 46262286 1 + C A rs725660 46262282 + 46262262 46262302 41 TGGAGGATGACATGGAGTACCTGACCCAAGGTGAGGCCCAG TGGAGGATGACATGGAGTACCTGAACCAAGGTGAGGCCCAG < 41bp 0.444413602796382 0.821001232027658 0.18485183 0.3278105 prediction 0.642002464055317 Functional Gain - BHMG1 ENSG00000237452 CDS Human protein_coding chr19:46262282 chr19:46262286 nonsynonymous SNV 0.150 2 25 hm5C_associated_SNPs_100629 0 1 0 0 1 BHMG1 chr19:46262291 5'GT 46262291 Upstream 6bp
chr22 44585035 44585035 1 + C A UCEC 44585031 + 44585011 44585051 41 AAGCTGGAAGCAGAGGACATCGCCCTGACAGCCACAAGCCA AAGCTGGAAGCAGAGGACATCGCCATGACAGCCACAAGCCA < 41bp 0.419555403619298 0.820956004816804 0.0702728 0.3767351 prediction 0.641912009633609 Functional Gain - PARVG ENSG00000138964 CDS Human protein_coding chr22:44585031 chr22:44585035 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_100631 0 0 0 0 1 PARVG chr22:44584994 3'AG 44584994 Downstream 42bp
chr7 72744232 72744232 1 + C A LUAD 72744228 + 72744208 72744248 41 GGCCAGGTTTCTGTTCAAACCGAACTACGCCTATGGAACGC GGCCAGGTTTCTGTTCAAACCGAAATACGCCTATGGAACGC < 41bp 0.433453204529148 0.820952707193304 0.16287044 0.21109703 prediction 0.641905414386607 Functional Gain - FKBP6 ENSG00000077800 CDS Human protein_coding chr7:72744228 chr7:72744232 nonsynonymous SNV 0.459 0 25 hm5C_associated_SNPs_100632 0 0 0 0 1 FKBP6 chr7:72744153 3'AG 72744153 Downstream 80bp
chr1 65211085 65211085 1 + C A UCEC 65211081 + 65211061 65211101 41 GGAAAATCCTGGTGAAAAACCTGCCCCAGGACAGCAACTGC GGAAAATCCTGGTGAAAAACCTGCACCAGGACAGCAACTGC < 41bp 0.563046673081451 0.883861094709955 0.3891915 0.23523322 prediction 0.641628843257007 Functional Gain - RAVER2 ENSG00000162437 CDS Human protein_coding chr1:65211081 chr1:65211085 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_100638 0 0 0 0 1 RAVER2 chr1:65211104 5'GT 65211104 Upstream 20bp
chr11 20385323 20385323 1 + C A rs182333117 20385319 + 20385299 20385339 41 GGCGCTGTCTCCGTCGCCTCCAACCCCCCCGGTCCGACCAG GGCGCTGTCTCCGTCGCCTCCAACACCCCCGGTCCGACCAG < 41bp 0.523560571140155 0.844349853161346 0.14280406 0.06480166 prediction 0.641578564042382 Functional Gain - HTATIP2 ENSG00000109854 UTR5 Human protein_coding chr11:20385319 chr11:20385323 . . 0 25 hm5C_associated_SNPs_100639 0 0 1 0 1 HTATIP2 chr11:20385344 5'GT 20385344 Upstream 22bp
chr12 102545573 102545573 1 + C A rs565215258 102545569 + 102545549 102545589 41 CTGAAGAAGCTGGCAGCTGTCATGCGGCAAGTGAGACAATG CTGAAGAAGCTGGCAGCTGTCATGAGGCAAGTGAGACAATG < 41bp 0.529130851456439 0.849915093540339 0.80151284 0.87136734 prediction 0.6415684841678 Functional Gain - PARPBP ENSG00000185480 CDS Human protein_coding chr12:102545569 chr12:102545573 synonymous SNV . 0 25 hm5C_associated_SNPs_100640 0 0 1 0 1 PARPBP chr12:102545578 5'GT 102545578 Upstream 6bp
chr1 150482593 150482593 1 + C A STAD 150482589 + 150482569 150482609 41 ATCTTGCAGTGGGTCCCCCTCTCCCTCAGGAAGCTGTCCCC ATCTTGCAGTGGGTCCCCCTCTCCATCAGGAAGCTGTCCCC < 41bp 0.447663606509715 0.820726922070653 0.8549875 0.97419906 prediction 0.641453844141307 Functional Gain - ECM1 ENSG00000143369 CDS Human protein_coding chr1:150482589 chr1:150482593 nonsynonymous SNV 0.543 3 25 hm5C_associated_SNPs_100642 0 0 0 0 2 ECM1 chr1:150482578 3'AG 150482578 Downstream 16bp
chr1 150482593 150482593 1 + C A STAD 150482589 + 150482569 150482609 41 ATCTTGCAGTGGGTCCCCCTCTCCCTCAGGAAGCTGTCCCC ATCTTGCAGTGGGTCCCCCTCTCCATCAGGAAGCTGTCCCC < 41bp 0.447663606509715 0.820726922070653 0.8549875 0.97419906 prediction 0.641453844141307 Functional Gain - ECM1 ENSG00000143369 CDS Human protein_coding chr1:150482589 chr1:150482593 nonsynonymous SNV 0.543 3 25 hm5C_associated_SNPs_100642 0 0 0 0 2 ECM1 chr1:150482658 5'GT 150482658 Upstream 66bp
chr15 77328231 77328231 1 + C A STAD 77328227 + 77328207 77328247 41 GCAGGAGATACAGGGAAACCCGGCCTCACCAGCCCAGGAGT GCAGGAGATACAGGGAAACCCGGCATCACCAGCCCAGGAGT < 41bp 0.569653008961845 0.89028697627288 0.8620592 0.7848079 prediction 0.64126793462207 Functional Gain - PSTPIP1 ENSG00000140368 CDS Human protein_coding chr15:77328227 chr15:77328231 synonymous SNV . 0 25 hm5C_associated_SNPs_100643 0 0 0 0 1 PSTPIP1 chr15:77328276 5'GT 77328276 Upstream 46bp
chr19 55295171 55295171 1 + C A UCEC 55295167 + 55295147 55295187 41 TCACACAGAGAAAAATCACTCGCCCTTCTCAGAGGCCCAAG TCACACAGAGAAAAATCACTCGCCATTCTCAGAGGCCCAAG < 41bp 0.448947295374273 0.820631202907647 0.09690505 0.81938493 prediction 0.641262405815294 Functional Gain - KIR2DL1 ENSG00000125498;ENSG00000243772 CDS Human other chr19:55295167 chr19:55295171 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_100644 0 0 0 0 1 KIR2DL1 chr19:55295089 3'AG 55295089 Downstream 83bp
chr18 43219773 43219773 1 + C A rs142923442 43219769 + 43219749 43219789 41 TGGCTGTGACAATCCCTGGACAGGCGGCGTGTTCCTGGTGG TGGCTGTGACAATCCCTGGACAGGAGGCGTGTTCCTGGTGG < 41bp 0.45949975753051 0.820610934307209 0.47789314 0.75918543 prediction 0.641221868614418 Functional Gain - SLC14A2 ENSG00000132874 CDS Human protein_coding chr18:43219769 chr18:43219773 synonymous SNV . 0 25 hm5C_associated_SNPs_100646 0 0 0 0 2 SLC14A2 chr18:43219711 3'AG 43219711 Downstream 63bp
chr18 43219773 43219773 1 + C A rs142923442 43219769 + 43219749 43219789 41 TGGCTGTGACAATCCCTGGACAGGCGGCGTGTTCCTGGTGG TGGCTGTGACAATCCCTGGACAGGAGGCGTGTTCCTGGTGG < 41bp 0.45949975753051 0.820610934307209 0.47789314 0.75918543 prediction 0.641221868614418 Functional Gain - SLC14A2 ENSG00000132874 CDS Human protein_coding chr18:43219769 chr18:43219773 synonymous SNV . 0 25 hm5C_associated_SNPs_100646 0 0 0 0 2 SLC14A2 chr18:43219858 5'GT 43219858 Upstream 86bp
chr19 15132729 15132729 1 + C A LUAD 15132725 + 15132705 15132745 41 CTCCCGGAGGCTGCGCGCCTCGCACAGGTAAACCCCCTCCC CTCCCGGAGGCTGCGCGCCTCGCAAAGGTAAACCCCCTCCC < 41bp 0.561153476287436 0.881749823280147 0.054226846 0.18558219 prediction 0.641192693985422 Functional Gain - CCDC105 ENSG00000160994 CDS Human protein_coding chr19:15132725 chr19:15132729 nonsynonymous SNV 0.260 0 25 hm5C_associated_SNPs_100649 0 0 0 0 1 CCDC105 chr19:15132731 5'GT 15132731 Upstream 3bp
chr5 145439516 145439516 1 + C A UCEC 145439512 + 145439492 145439532 41 GCAGCCCCACCATGGTCCTTCGGCCTCAGCAGTTCCAATTC GCAGCCCCACCATGGTCCTTCGGCATCAGCAGTTCCAATTC < 41bp 0.565555259940122 0.886151101995655 0.17829365 0.1160841 prediction 0.641191684111067 Functional Gain - SH3RF2 ENSG00000156463 CDS Human protein_coding chr5:145439512 chr5:145439516 nonsynonymous SNV 0.977 1 25 hm5C_associated_SNPs_100650 0 0 0 0 1 SH3RF2 chr5:145439429 3'AG 145439429 Downstream 88bp
chr5 176823992 176823992 1 + C A LUAD 176823988 + 176823968 176824008 41 ATTGAGAGGGCCTACCCGCTCACACTGGGTTCCAACATCGG ATTGAGAGGGCCTACCCGCTCACAATGGGTTCCAACATCGG < 41bp 0.433226110635412 0.820585903230175 0.071222395 0.1657117 prediction 0.64117180646035 Functional Gain - SLC34A1 ENSG00000131183 CDS Human protein_coding chr5:176823988 chr5:176823992 nonsynonymous SNV 0.978 5 25 hm5C_associated_SNPs_100652 0 0 0 0 2 SLC34A1 chr5:176823951 3'AG 176823951 Downstream 42bp
chr5 176823992 176823992 1 + C A LUAD 176823988 + 176823968 176824008 41 ATTGAGAGGGCCTACCCGCTCACACTGGGTTCCAACATCGG ATTGAGAGGGCCTACCCGCTCACAATGGGTTCCAACATCGG < 41bp 0.433226110635412 0.820585903230175 0.071222395 0.1657117 prediction 0.64117180646035 Functional Gain - SLC34A1 ENSG00000131183 CDS Human protein_coding chr5:176823988 chr5:176823992 nonsynonymous SNV 0.978 5 25 hm5C_associated_SNPs_100652 0 0 0 0 2 SLC34A1 chr5:176824075 5'GT 176824075 Upstream 84bp
chr9 139840170 139840170 1 + C A UCEC 139840166 + 139840146 139840186 41 GGCCACCGGGCCGAGGCCACCACACTGCATGTGGCTCCCCA GGCCACCGGGCCGAGGCCACCACAATGCATGTGGCTCCCCA < 41bp 0.564611244405476 0.88518732796969 0.1868034 0.3152497 prediction 0.641152167128429 Functional Gain - C8G ENSG00000176919 CDS Human protein_coding chr9:139840166 chr9:139840170 nonsynonymous SNV 0.052 0 25 hm5C_associated_SNPs_100653 0 0 1 0 2 C8G chr9:139840086 3'AG 139840086 Downstream 85bp
chr9 139840170 139840170 1 + C A UCEC 139840166 + 139840146 139840186 41 GGCCACCGGGCCGAGGCCACCACACTGCATGTGGCTCCCCA GGCCACCGGGCCGAGGCCACCACAATGCATGTGGCTCCCCA < 41bp 0.564611244405476 0.88518732796969 0.1868034 0.3152497 prediction 0.641152167128429 Functional Gain - C8G ENSG00000176919 CDS Human protein_coding chr9:139840166 chr9:139840170 nonsynonymous SNV 0.052 0 25 hm5C_associated_SNPs_100653 0 0 1 0 2 C8G chr9:139840222 5'GT 139840222 Upstream 53bp
chr22 45691481 45691481 1 + C A LUSC 45691477 + 45691457 45691497 41 GATGGGGAAACGACTCACGACTCCCAAATCACTCAGGAGGC GATGGGGAAACGACTCACGACTCCAAAATCACTCAGGAGGC < 41bp 0.411965159289788 0.820574347525452 0.42918432 0.96384645 prediction 0.641148695050904 Functional Gain - UPK3A ENSG00000100373 CDS Human protein_coding chr22:45691477 chr22:45691481 nonsynonymous SNV 0.987 3 25 hm5C_associated_SNPs_100655 0 0 0 0 1 UPK3A chr22:45691441 3'AG 45691441 Downstream 41bp
chr7 100275229 100275229 1 + C A OV 100275225 + 100275205 100275245 41 GACAACATCTGCTCCATCTACAGCCTCAAGACCCGCGAGGG GACAACATCTGCTCCATCTACAGCATCAAGACCCGCGAGGG < 41bp 0.442830547744323 0.820499898040536 0.15632677 0.07014042 prediction 0.640999796081072 Functional Gain - GNB2 ENSG00000172354 CDS Human protein_coding chr7:100275225 chr7:100275229 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_100661 0 0 1 0 1 GNB2 chr7:100275283 5'GT 100275283 Upstream 55bp
chrX 70522155 70522155 1 + T G rs768682304 70522152 + 70522132 70522172 41 GTCCTGCTGCCGAAAGCGAACTGTAGATTTCTCTGAGTTCT GTCCTGCTGCCGAAAGCGAACTGGAGATTTCTCTGAGTTCT < 41bp 0.46814990776988 0.820464210754112 0.37519026 0.8889288 prediction 0.640928421508224 Functional Gain - ITGB1BP2 ENSG00000147166 CDS Human protein_coding chrX:70522152 chrX:70522155 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_100663 0 0 1 0 1 ITGB1BP2 chrX:70522183 5'GT 70522183 Upstream 29bp
chr1 156702105 156702105 1 + C A OV 156702101 + 156702081 156702121 41 CAGTGTGGCCACTCACCCTGCTGGCCCTGAAGTCCACGGCG CAGTGTGGCCACTCACCCTGCTGGACCTGAAGTCCACGGCG < 41bp 0.566021846596316 0.886478205595503 0.25494748 0.3668769 prediction 0.640912717998373 Functional Gain - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156702101 chr1:156702105 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_100664 0 0 0 0 1 RRNAD1 chr1:156702073 3'AG 156702073 Downstream 33bp
chr7 31732113 31732113 1 + C A LUAD 31732109 + 31732089 31732129 41 CTCTCAGAAGACAGACTGGACAAGCTAGACCCTCGTTGCAG CTCTCAGAAGACAGACTGGACAAGATAGACCCTCGTTGCAG < 41bp 0.557192685506654 0.877607550567635 0.28037968 0.37735772 prediction 0.640829730121963 Functional Gain - PPP1R17 ENSG00000106341 CDS Human protein_coding chr7:31732109 chr7:31732113 nonsynonymous SNV 0.579 1 25 hm5C_associated_SNPs_100666 0 0 0 0 2 PPP1R17 chr7:31732020 3'AG 31732020 Downstream 94bp
chr7 31732113 31732113 1 + C A LUAD 31732109 + 31732089 31732129 41 CTCTCAGAAGACAGACTGGACAAGCTAGACCCTCGTTGCAG CTCTCAGAAGACAGACTGGACAAGATAGACCCTCGTTGCAG < 41bp 0.557192685506654 0.877607550567635 0.28037968 0.37735772 prediction 0.640829730121963 Functional Gain - PPP1R17 ENSG00000106341 CDS Human protein_coding chr7:31732109 chr7:31732113 nonsynonymous SNV 0.579 1 25 hm5C_associated_SNPs_100666 0 0 0 0 2 PPP1R17 chr7:31732137 5'GT 31732137 Upstream 25bp
chr10 75529125 75529125 1 + C A PAAD 75529121 + 75529101 75529141 41 CTAGTGTGCCCTGCTTTACACCAGCTGTGCAGGGCAGCGTC CTAGTGTGCCCTGCTTTACACCAGATGTGCAGGGCAGCGTC < 41bp 0.440437229153271 0.820382602905346 0.18503407 0.32086787 prediction 0.640765205810691 Functional Gain - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529121 chr10:75529125 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_100673 0 0 1 2 1 SEC24C chr10:75529105 3'AG 75529105 Downstream 21bp
chr11 113140939 113140939 1 - A C SKCM 113140942 - 113140922 113140962 41 GAGGATGCCCACGATGGCCCCGGTGCTCAGGCCTGAGGTGG GAGGATGCCCACGATGGCCCCGGGGCTCAGGCCTGAGGTGG < 41bp 0.551995261907133 0.872361437037123 0.7206201 0.9002243 prediction 0.64073235025998 Functional Gain - NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113140942 chr11:113140939 nonsynonymous SNV 0.994 0 24 hm5C_associated_SNPs_100676 0 0 0 0 1 NCAM1 chr11:113140926 5'GT 113140926 Upstream 14bp
chr17 34091520 34091520 1 + C A UCEC 34091516 + 34091496 34091536 41 GCCGCGCCGCGGGGGCTGTGCTTGCTGCGAGCTCCTCTTCT GCCGCGCCGCGGGGGCTGTGCTTGATGCGAGCTCCTCTTCT < 41bp 0.542628025447186 0.862982621985549 0.37179208 0.5838712 prediction 0.640709193076726 Functional Gain - C17orf50 ENSG00000154768 CDS Human other chr17:34091516 chr17:34091520 stopgain 0.827 0 25 hm5C_associated_SNPs_100678 0 0 0 0 1 C17orf50 chr17:34091445 3'AG 34091445 Downstream 76bp
chr1 165621271 165621271 1 + C A SKCM 165621267 + 165621247 165621287 41 TAGCTGTTGGAGGTGTTTACCACCCGGTAAGTTTTCCAGGA TAGCTGTTGGAGGTGTTTACCACCAGGTAAGTTTTCCAGGA < 41bp 0.569031639569719 0.889379094901499 0.42029154 0.733217 prediction 0.640694910663561 Functional Gain - MGST3 ENSG00000143198 CDS Human protein_coding chr1:165621267 chr1:165621271 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100679 0 0 1 0 2 MGST3 chr1:165621215 3'AG 165621215 Downstream 57bp
chr1 165621271 165621271 1 + C A SKCM 165621267 + 165621247 165621287 41 TAGCTGTTGGAGGTGTTTACCACCCGGTAAGTTTTCCAGGA TAGCTGTTGGAGGTGTTTACCACCAGGTAAGTTTTCCAGGA < 41bp 0.569031639569719 0.889379094901499 0.42029154 0.733217 prediction 0.640694910663561 Functional Gain - MGST3 ENSG00000143198 CDS Human protein_coding chr1:165621267 chr1:165621271 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100679 0 0 1 0 2 MGST3 chr1:165621272 5'GT 165621272 Upstream 2bp
chr3 38045751 38045751 1 + C A COAD 38045747 + 38045727 38045767 41 TGCTGTCCGTGCTGGCCAGGCTCCCTGAGGAGGTCCCCAGC TGCTGTCCGTGCTGGCCAGGCTCCATGAGGAGGTCCCCAGC < 41bp 0.415684249823211 0.820259969549551 0.16606277 0.91548693 prediction 0.640519939099101 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38045747 chr3:38045751 nonsynonymous SNV 0.698 1 25 hm5C_associated_SNPs_100682 0 0 1 0 1 VILL chr3:38045746 3'AG 38045746 Downstream 6bp
chr16 72139184 72139184 1 + C A rs2074626 72139180 + 72139160 72139200 41 GGAGGAACTGGAGAACGCGCCTGCCCTGGCTGTGCTGCCCA GGAGGAACTGGAGAACGCGCCTGCACTGGCTGTGCTGCCCA < 41bp 0.410110010855725 0.820226952186654 0.15373597 0.2668984 prediction 0.640453904373308 Functional Gain - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72139180 chr16:72139184 synonymous SNV . 0 25 hm5C_associated_SNPs_100684 0 0 1 0 2 DHX38 chr16:72139131 3'AG 72139131 Downstream 54bp
chr16 72139184 72139184 1 + C A rs2074626 72139180 + 72139160 72139200 41 GGAGGAACTGGAGAACGCGCCTGCCCTGGCTGTGCTGCCCA GGAGGAACTGGAGAACGCGCCTGCACTGGCTGTGCTGCCCA < 41bp 0.410110010855725 0.820226952186654 0.15373597 0.2668984 prediction 0.640453904373308 Functional Gain - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72139180 chr16:72139184 synonymous SNV . 0 25 hm5C_associated_SNPs_100684 0 0 1 0 2 DHX38 chr16:72139247 5'GT 72139247 Upstream 64bp
chr11 63987784 63987784 1 + C A UCEC 63987780 + 63987760 63987800 41 CCTGAGGGCATGAGTGAGATCTACCTGCGGTGCCAGGATGT CCTGAGGGCATGAGTGAGATCTACATGCGGTGCCAGGATGT < 41bp 0.422344661021345 0.820212960222988 0.07233253 0.6893527 prediction 0.640425920445977 Functional Gain - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63987780 chr11:63987784 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_100685 0 0 1 0 2 FERMT3 chr11:63987692 3'AG 63987692 Downstream 93bp
chr11 63987784 63987784 1 + C A UCEC 63987780 + 63987760 63987800 41 CCTGAGGGCATGAGTGAGATCTACCTGCGGTGCCAGGATGT CCTGAGGGCATGAGTGAGATCTACATGCGGTGCCAGGATGT < 41bp 0.422344661021345 0.820212960222988 0.07233253 0.6893527 prediction 0.640425920445977 Functional Gain - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63987780 chr11:63987784 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_100685 0 0 1 0 2 FERMT3 chr11:63987798 5'GT 63987798 Upstream 15bp
chr11 57563067 57563067 1 + T G KIRC 57563064 + 57563044 57563084 41 TATAGGATCACAGTCACCTTCTATATAGCACCATCCCCAGG TATAGGATCACAGTCACCTTCTAGATAGCACCATCCCCAGG < 41bp 0.485590179234101 0.820196862197315 0.15383527 0.1766848 prediction 0.64039372439463 Functional Gain - CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57563064 chr11:57563067 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_100687 0 0 1 0 1 CTNND1 chr11:57563049 3'AG 57563049 Downstream 19bp
chr7 134925332 134925332 1 + C A LUSC 134925328 + 134925308 134925348 41 ATGACAGAGCAACACCCCAGCTGCCAGCACAGCTGCAGGAG ATGACAGAGCAACACCCCAGCTGCAAGCACAGCTGCAGGAG < 41bp 0.42057418145158 0.820175096656306 0.13544804 0.13841385 prediction 0.640350193312611 Functional Gain - STRA8 ENSG00000146857 CDS Human protein_coding chr7:134925328 chr7:134925332 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_100688 0 0 0 0 1 STRA8 chr7:134925271 3'AG 134925271 Downstream 62bp
chr16 57762347 57762347 1 + C A UCEC 57762343 + 57762323 57762363 41 CACCTGCGGCAGGTGGAGACCCAGCTGGACTACCTGGCCCC CACCTGCGGCAGGTGGAGACCCAGATGGACTACCTGGCCCC < 41bp 0.438896086700255 0.82014538807683 0.78093344 0.91611785 prediction 0.640290776153661 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57762343 chr16:57762347 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_100690 0 0 0 0 1 DRC7 chr16:57762302 3'AG 57762302 Downstream 46bp
chr4 947071 947071 1 + C A PAAD 947067 + 947047 947087 41 AGGGCTCTGTACCGACGACACGTCCTGGGCATCGTCCTCCA AGGGCTCTGTACCGACGACACGTCATGGGCATCGTCCTCCA < 41bp 0.432336271454422 0.820114349393497 0.03530273 0.084021926 prediction 0.640228698786995 Functional Gain - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:947067 chr4:947071 nonsynonymous SNV 0.023 3 25 hm5C_associated_SNPs_100692 0 0 0 0 2 TMEM175 chr4:946978 3'AG 946978 Downstream 94bp
chr4 947071 947071 1 + C A PAAD 947067 + 947047 947087 41 AGGGCTCTGTACCGACGACACGTCCTGGGCATCGTCCTCCA AGGGCTCTGTACCGACGACACGTCATGGGCATCGTCCTCCA < 41bp 0.432336271454422 0.820114349393497 0.03530273 0.084021926 prediction 0.640228698786995 Functional Gain - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:947067 chr4:947071 nonsynonymous SNV 0.023 3 25 hm5C_associated_SNPs_100692 0 0 0 0 2 TMEM175 chr4:947142 5'GT 947142 Upstream 72bp
chr7 150417426 150417426 1 + C A STAD 150417422 + 150417402 150417442 41 TGCTACCTGCTCTCGGCCCCCGGACCCCACGCGCTGCTCCT TGCTACCTGCTCTCGGCCCCCGGAACCCACGCGCTGCTCCT < 41bp 0.441637504174998 0.820050841478342 0.3302934 0.73710203 prediction 0.640101682956684 Functional Gain - GIMAP1;GIMAP1-GIMAP5 ENSG00000213203 CDS Human protein_coding chr7:150417422 chr7:150417426 nonsynonymous SNV 0.174 2 25 hm5C_associated_SNPs_100695 0 0 0 0 1 GIMAP1;GIMAP1-GIMAP5 chr7:150417494 5'GT 150417494 Upstream 69bp
chr20 31890827 31890827 1 + C A UCEC 31890823 + 31890803 31890843 41 GCCAAGGTGGCCCAACTGATCGTGCTGGAAGTGTTTCCCTC GCCAAGGTGGCCCAACTGATCGTGATGGAAGTGTTTCCCTC < 41bp 0.559605607094118 0.879651377543606 0.89808476 0.8352323 prediction 0.640091540898976 Functional Gain - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31890823 chr20:31890827 nonsynonymous SNV 0.316 0 25 hm5C_associated_SNPs_100696 0 0 0 0 1 BPIFB1 chr20:31890880 5'GT 31890880 Upstream 54bp
chr7 5922210 5922210 1 + T G LUAD 5922207 + 5922187 5922227 41 ATCAGGTGAAGGATGTTTTCCGGTTCATAGACAACGACCAG ATCAGGTGAAGGATGTTTTCCGGGTCATAGACAACGACCAG < 41bp 0.456519660571169 0.819963863834811 0.2761268 0.8345505 prediction 0.639927727669621 Functional Gain - OCM ENSG00000122543 CDS Human protein_coding chr7:5922207 chr7:5922210 nonsynonymous SNV 0.854 0 24 hm5C_associated_SNPs_100701 0 0 0 0 2 OCM chr7:5922124 3'AG 5922124 Downstream 87bp
chr7 5922210 5922210 1 + T G LUAD 5922207 + 5922187 5922227 41 ATCAGGTGAAGGATGTTTTCCGGTTCATAGACAACGACCAG ATCAGGTGAAGGATGTTTTCCGGGTCATAGACAACGACCAG < 41bp 0.456519660571169 0.819963863834811 0.2761268 0.8345505 prediction 0.639927727669621 Functional Gain - OCM ENSG00000122543 CDS Human protein_coding chr7:5922207 chr7:5922210 nonsynonymous SNV 0.854 0 24 hm5C_associated_SNPs_100701 0 0 0 0 2 OCM chr7:5922256 5'GT 5922256 Upstream 47bp
chr7 55479765 55479765 1 + C A UCEC 55479761 + 55479741 55479781 41 GGCGCCCCGGGGGTCATCCACATGCTCATGCAGGCGTACAA GGCGCCCCGGGGGTCATCCACATGATCATGCAGGCGTACAA < 41bp 0.437379503238839 0.819907574726198 0.4972411 0.67218876 prediction 0.639815149452396 Functional Gain - LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55479761 chr7:55479765 nonsynonymous SNV 0.850 4 25 hm5C_associated_SNPs_100704 0 0 0 0 1 LANCL2 chr7:55479782 5'GT 55479782 Upstream 18bp
chr5 169659987 169659987 1 + C A rs77367258 169659983 + 169659963 169660003 41 TCACCGTCGGCTCCCTGCTCCTGTCAGAACCTCGGTGACGG TCACCGTCGGCTCCCTGCTCCTGTAAGAACCTCGGTGACGG < 41bp 0.497985827133589 0.819837065345854 0.038598776 0.11423549 prediction 0.639674130691708 Functional Gain - C5orf58 ENSG00000234511 UTR5 Human protein_coding chr5:169659983 chr5:169659987 . . 0 25 hm5C_associated_SNPs_100709 0 0 0 0 1 C5orf58 chr5:169660011 5'GT 169660011 Upstream 25bp
chr1 36552392 36552392 1 + C A SKCM 36552388 + 36552368 36552408 41 GATCGACAGAGGCTGTCTCTCTCTCAACCTCAGATCCCCAA GATCGACAGAGGCTGTCTCTCTCTAAACCTCAGATCCCCAA < 41bp 0.409607192309633 0.819832387525552 0.1503326 0.9333981 prediction 0.639664775051104 Functional Gain - TEKT2 ENSG00000092850 CDS Human protein_coding chr1:36552388 chr1:36552392 synonymous SNV . 0 25 hm5C_associated_SNPs_100710 0 0 0 0 2 TEKT2 chr1:36552305 3'AG 36552305 Downstream 88bp
chr1 36552392 36552392 1 + C A SKCM 36552388 + 36552368 36552408 41 GATCGACAGAGGCTGTCTCTCTCTCAACCTCAGATCCCCAA GATCGACAGAGGCTGTCTCTCTCTAAACCTCAGATCCCCAA < 41bp 0.409607192309633 0.819832387525552 0.1503326 0.9333981 prediction 0.639664775051104 Functional Gain - TEKT2 ENSG00000092850 CDS Human protein_coding chr1:36552388 chr1:36552392 synonymous SNV . 0 25 hm5C_associated_SNPs_100710 0 0 0 0 2 TEKT2 chr1:36552448 5'GT 36552448 Upstream 57bp
chr14 73637673 73637673 1 + T G SKCM 73637670 + 73637650 73637690 41 GCGCCAAGCATGTGATCATGCTCTTTGTCCCTGTGACTCTC GCGCCAAGCATGTGATCATGCTCGTTGTCCCTGTGACTCTC < 41bp 0.470677757073053 0.819740587818631 0.31379676 0.12034199 prediction 0.639481175637261 Functional Gain - PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637670 chr14:73637673 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_100713 0 0 1 0 1 PSEN1 chr14:73637755 5'GT 73637755 Upstream 83bp
chr9 132632061 132632061 1 + C A STAD 132632057 + 132632037 132632077 41 CCAGAATGTGCCGGCCAAGCCAGGCGCCTGTGGGGACAGCT CCAGAATGTGCCGGCCAAGCCAGGAGCCTGTGGGGACAGCT < 41bp 0.564370082038118 0.883928637599403 0.8561027 0.8868251 prediction 0.63911711112257 Functional Gain - USP20 ENSG00000136878 CDS Human protein_coding chr9:132632057 chr9:132632061 synonymous SNV . 0 25 hm5C_associated_SNPs_100723 0 0 1 0 1 USP20 chr9:132632123 5'GT 132632123 Upstream 63bp
chr12 10339131 10339131 1 + T G SARC 10339128 + 10339108 10339148 41 GGGAAGATGGGGGCCCACCACCCTGTGAAGTGACCGTCATT GGGAAGATGGGGGCCCACCACCCGGTGAAGTGACCGTCATT < 41bp 0.445754876472325 0.819543580013921 0.097810775 0.29557618 prediction 0.639087160027841 Functional Gain - TMEM52B ENSG00000165685 CDS Human protein_coding chr12:10339128 chr12:10339131 nonsynonymous SNV 0.107 0 24 hm5C_associated_SNPs_100725 0 0 0 0 1 TMEM52B chr12:10339188 5'GT 10339188 Upstream 58bp
chrX 48341100 48341100 1 + C A LUAD 48341096 + 48341076 48341116 41 GGCAGCTGGCCAAGGAGATCCGCCCCCAGGACTGCCCCATC GGCAGCTGGCCAAGGAGATCCGCCACCAGGACTGCCCCATC < 41bp 0.57994255835402 0.899484311989507 0.10262412 0.41585073 prediction 0.639083507270974 Functional Gain - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48341096 chrX:48341100 nonsynonymous SNV 0.993 1 25 hm5C_associated_SNPs_100726 0 0 1 0 1 FTSJ1 chrX:48341182 5'GT 48341182 Upstream 83bp
chr6 30312962 30312962 1 + T G rs201417696 30312959 + 30312939 30312979 41 CGCGGCGGTGATGGCGGGGCCGGTGAAGGACCGCGAGGCCT CGCGGCGGTGATGGCGGGGCCGGGGAAGGACCGCGAGGCCT < 41bp 0.47782363951939 0.819488093314183 0.7830841 0.8970295 prediction 0.638976186628365 Functional Gain - RPP21 ENSG00000241370 CDS Human protein_coding chr6:30312959 chr6:30312962 nonsynonymous SNV 0.962 4 24 hm5C_associated_SNPs_100728 0 0 1 0 1 RPP21 chr6:30313005 5'GT 30313005 Upstream 44bp
chrX 26158113 26158113 1 + C A LUAD 26158109 + 26158089 26158129 41 TGCACGTTCCAGAACCACGTCTAGCAGCTTCTCCCATGCTA TGCACGTTCCAGAACCACGTCTAGAAGCTTCTCCCATGCTA < 41bp 0.439691082930746 0.81944279839809 0.11699796 0.26984292 prediction 0.63888559679618 Functional Gain - MAGEB18 ENSG00000176774 CDS Human protein_coding chrX:26158109 chrX:26158113 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_100730 0 0 0 0 1 MAGEB18 chrX:26158170 5'GT 26158170 Upstream 58bp
chr12 49934763 49934763 1 + C A UCEC 49934759 + 49934739 49934779 41 GCTCTGATGGCTTCTGTGACCTCACGGGCTTCTCCCGGGCT GCTCTGATGGCTTCTGTGACCTCAAGGGCTTCTCCCGGGCT < 41bp 0.424135466458115 0.819401395632281 0.203834 0.21698192 prediction 0.638802791264562 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49934759 chr12:49934763 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_100732 0 0 0 0 2 KCNH3 chr12:49934682 3'AG 49934682 Downstream 82bp
chr12 49934763 49934763 1 + C A UCEC 49934759 + 49934739 49934779 41 GCTCTGATGGCTTCTGTGACCTCACGGGCTTCTCCCGGGCT GCTCTGATGGCTTCTGTGACCTCAAGGGCTTCTCCCGGGCT < 41bp 0.424135466458115 0.819401395632281 0.203834 0.21698192 prediction 0.638802791264562 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49934759 chr12:49934763 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_100732 0 0 0 0 2 KCNH3 chr12:49934686 3'AG 49934686 Downstream 78bp
chr19 50150037 50150037 1 + C A LUAD 50150033 + 50150013 50150053 41 GGGACAGAGATCCCATCCCTCTGCCTGTGCCCAGCCTGCTG GGGACAGAGATCCCATCCCTCTGCATGTGCCCAGCCTGCTG < 41bp 0.570953026489771 0.890199690521455 0.34551796 0.5607338 prediction 0.63849332806337 Functional Gain - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50150033 chr19:50150037 nonsynonymous SNV 0.981 2 25 hm5C_associated_SNPs_100739 0 0 1 0 2 SCAF1 chr19:50149972 3'AG 50149972 Downstream 66bp
chr19 50150037 50150037 1 + C A LUAD 50150033 + 50150013 50150053 41 GGGACAGAGATCCCATCCCTCTGCCTGTGCCCAGCCTGCTG GGGACAGAGATCCCATCCCTCTGCATGTGCCCAGCCTGCTG < 41bp 0.570953026489771 0.890199690521455 0.34551796 0.5607338 prediction 0.63849332806337 Functional Gain - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50150033 chr19:50150037 nonsynonymous SNV 0.981 2 25 hm5C_associated_SNPs_100739 0 0 1 0 2 SCAF1 chr19:50150087 5'GT 50150087 Upstream 51bp
chr9 127636001 127636001 1 + C A UCEC 127635997 + 127635977 127636017 41 CATGCTTCGGGCATTCCATGCAGCCTTGCGGAACTCTCCCG CATGCTTCGGGCATTCCATGCAGCATTGCGGAACTCTCCCG < 41bp 0.569022781491041 0.888245151399829 0.4867238 0.3721948 prediction 0.638444739817577 Functional Gain - ARPC5L ENSG00000136950 CDS Human protein_coding chr9:127635997 chr9:127636001 synonymous SNV . 0 25 hm5C_associated_SNPs_100742 0 0 1 0 1 ARPC5L chr9:127636043 5'GT 127636043 Upstream 43bp
chr2 24245740 24245740 1 + T G UCEC 24245737 + 24245717 24245757 41 TGTGGGAGTGGGTTCTCCAGCGCTTTGGGAAGAAGACGTCA TGTGGGAGTGGGTTCTCCAGCGCGTTGGGAAGAAGACGTCA < 41bp 0.455788715822756 0.819217066140713 0.910796 0.9094093 prediction 0.638434132281425 Functional Gain - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24245737 chr2:24245740 nonsynonymous SNV 0.863 5 24 hm5C_associated_SNPs_100743 0 0 0 0 2 MFSD2B chr2:24245692 3'AG 24245692 Downstream 49bp
chr2 24245740 24245740 1 + T G UCEC 24245737 + 24245717 24245757 41 TGTGGGAGTGGGTTCTCCAGCGCTTTGGGAAGAAGACGTCA TGTGGGAGTGGGTTCTCCAGCGCGTTGGGAAGAAGACGTCA < 41bp 0.455788715822756 0.819217066140713 0.910796 0.9094093 prediction 0.638434132281425 Functional Gain - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24245737 chr2:24245740 nonsynonymous SNV 0.863 5 24 hm5C_associated_SNPs_100743 0 0 0 0 2 MFSD2B chr2:24245772 5'GT 24245772 Upstream 33bp
chr22 24909375 24909375 1 + C A LUSC 24909371 + 24909351 24909391 41 TGGGGATGTTTTGTGGAATACAGCCGTGGTGATCTCCAATT TGGGGATGTTTTGTGGAATACAGCAGTGGTGATCTCCAATT < 41bp 0.574855713560631 0.894025133307894 0.16344112 0.22742674 prediction 0.638338839494526 Functional Gain - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24909371 chr22:24909375 synonymous SNV . 0 25 hm5C_associated_SNPs_100747 0 0 0 0 2 UPB1 chr22:24909292 3'AG 24909292 Downstream 84bp
chr22 24909375 24909375 1 + C A LUSC 24909371 + 24909351 24909391 41 TGGGGATGTTTTGTGGAATACAGCCGTGGTGATCTCCAATT TGGGGATGTTTTGTGGAATACAGCAGTGGTGATCTCCAATT < 41bp 0.574855713560631 0.894025133307894 0.16344112 0.22742674 prediction 0.638338839494526 Functional Gain - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24909371 chr22:24909375 synonymous SNV . 0 25 hm5C_associated_SNPs_100747 0 0 0 0 2 UPB1 chr22:24909453 5'GT 24909453 Upstream 79bp
chr6 43098280 43098280 1 + C A UCEC 43098276 + 43098256 43098296 41 CTTTGCCAGGGTGGTGCTGGCACCCCAGGACGTGGTAGTAG CTTTGCCAGGGTGGTGCTGGCACCACAGGACGTGGTAGTAG < 41bp 0.42570268674175 0.819107002364398 0.13089621 0.12490669 prediction 0.638214004728795 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43098276 chr6:43098280 synonymous SNV . 0 25 hm5C_associated_SNPs_100752 0 0 1 0 1 PTK7 chr6:43098249 3'AG 43098249 Downstream 32bp
chr2 27322662 27322662 1 - G T LUAD 27322666 - 27322646 27322686 41 ATGGAGGGGAGAAGGCGATGCAGCCGCAATGGTAGTCTCCA ATGGAGGGGAGAAGGCGATGCAGCAGCAATGGTAGTCTCCA < 41bp 0.47219684826061 0.818818165166442 0.59418905 0.48622054 prediction 0.637636330332883 Functional Gain - CGREF1 ENSG00000138028 CDS Human protein_coding chr2:27322666 chr2:27322662 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_100765 0 0 0 0 1 CGREF1 chr2:27322708 3'AG 27322708 Downstream 47bp
chr20 57896143 57896143 1 + C A LUSC 57896139 + 57896119 57896159 41 GCAAGAGGTCTGCGGGGCCACTTCCAGGGAATCTGCAGCTC GCAAGAGGTCTGCGGGGCCACTTCAAGGGAATCTGCAGCTC < 41bp 0.404530235990771 0.818815123291466 0.3469074 0.83413494 prediction 0.637630246582931 Functional Gain - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57896139 chr20:57896143 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_100766 0 0 0 0 1 EDN3 chr20:57896072 3'AG 57896072 Downstream 72bp
chr19 58846488 58846488 1 + C A UCEC 58846484 + 58846464 58846504 41 GTGCGCTGCCCCCAGAGATCCAAGCCTGGGTGGGAGCCCAG GTGCGCTGCCCCCAGAGATCCAAGACTGGGTGGGAGCCCAG < 41bp 0.564897179333196 0.883710823385844 0.2975307 0.3598067 prediction 0.637627288105296 Functional Gain - ZSCAN22 ENSG00000182318 CDS Human protein_coding chr19:58846484 chr19:58846488 nonsynonymous SNV 0.539 1 25 hm5C_associated_SNPs_100767 0 0 0 0 2 ZSCAN22 chr19:58846555 5'GT 58846555 Upstream 68bp
chr19 58846488 58846488 1 + C A UCEC 58846484 + 58846464 58846504 41 GTGCGCTGCCCCCAGAGATCCAAGCCTGGGTGGGAGCCCAG GTGCGCTGCCCCCAGAGATCCAAGACTGGGTGGGAGCCCAG < 41bp 0.564897179333196 0.883710823385844 0.2975307 0.3598067 prediction 0.637627288105296 Functional Gain - ZSCAN22 ENSG00000182318 CDS Human protein_coding chr19:58846484 chr19:58846488 nonsynonymous SNV 0.539 1 25 hm5C_associated_SNPs_100767 0 0 0 0 2 ZSCAN22 chr19:58846571 5'GT 58846571 Upstream 84bp
chr10 134013895 134013895 1 + C A UCEC 134013891 + 134013871 134013911 41 TTTGGGGAGCCCATCACCGCCAGCCTGGGCACCGACGGTTC TTTGGGGAGCCCATCACCGCCAGCATGGGCACCGACGGTTC < 41bp 0.57754232143097 0.896289392105226 0.6476482 0.4527795 prediction 0.637494141348512 Functional Gain - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134013891 chr10:134013895 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_100773 0 0 0 0 1 DPYSL4 chr10:134013860 3'AG 134013860 Downstream 36bp
chr19 36275213 36275213 1 + C A ACC 36275209 + 36275189 36275229 41 ACCTTCACCTCCGCCGGCCTCGACCCTGCAGGTATGCCCTC ACCTTCACCTCCGCCGGCCTCGACACTGCAGGTATGCCCTC < 41bp 0.438383338912774 0.818734987294941 0.15168026 0.34962958 prediction 0.637469974589882 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36275209 chr19:36275213 nonsynonymous SNV 0.981 1 25 hm5C_associated_SNPs_100774 0 0 0 0 1 ARHGAP33 chr19:36275219 5'GT 36275219 Upstream 7bp
chr19 5771061 5771061 1 + C A COAD 5771057 + 5771037 5771077 41 CCTCTCCTCGTCTACTATGACACCCTATGGAAGCCCGTGGT CCTCTCCTCGTCTACTATGACACCATATGGAAGCCCGTGGT < 41bp 0.408390316087227 0.81868288448485 0.17519867 0.33286336 prediction 0.6373657689697 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5771057 chr19:5771061 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_100776 0 0 0 0 1 CATSPERD chr19:5771083 5'GT 5771083 Upstream 23bp
chr7 142836664 142836664 1 + C A LUAD 142836660 + 142836640 142836680 41 GTTATTCGGGAATTAGGCATCTGCCCTGATGATGCTGCTGT GTTATTCGGGAATTAGGCATCTGCACTGATGATGCTGCTGT < 41bp 0.44130812790333 0.818624946319682 0.23954341 0.36144307 prediction 0.637249892639363 Functional Gain - PIP ENSG00000159763 CDS Human protein_coding chr7:142836660 chr7:142836664 nonsynonymous SNV 0.464 3 25 hm5C_associated_SNPs_100778 0 0 0 0 1 PIP chr7:142836611 3'AG 142836611 Downstream 54bp
chr16 2749829 2749829 1 + T G SKCM 2749826 + 2749806 2749846 41 CCCATTGTCCTTGCAGGTGCCTGTGAAGCATGTGTACCGTG CCCATTGTCCTTGCAGGTGCCTGGGAAGCATGTGTACCGTG < 41bp 0.449340248277302 0.818572277212025 0.06368801 0.890483 prediction 0.63714455442405 Functional Gain - KCTD5 ENSG00000167977 CDS Human protein_coding chr16:2749826 chr16:2749829 nonsynonymous SNV 0.949 1 24 hm5C_associated_SNPs_100780 0 0 1 0 2 KCTD5 chr16:2749822 3'AG 2749822 Downstream 8bp
chr16 2749829 2749829 1 + T G SKCM 2749826 + 2749806 2749846 41 CCCATTGTCCTTGCAGGTGCCTGTGAAGCATGTGTACCGTG CCCATTGTCCTTGCAGGTGCCTGGGAAGCATGTGTACCGTG < 41bp 0.449340248277302 0.818572277212025 0.06368801 0.890483 prediction 0.63714455442405 Functional Gain - KCTD5 ENSG00000167977 CDS Human protein_coding chr16:2749826 chr16:2749829 nonsynonymous SNV 0.949 1 24 hm5C_associated_SNPs_100780 0 0 1 0 2 KCTD5 chr16:2749917 5'GT 2749917 Upstream 89bp
chr2 106471654 106471654 1 + C A CESC 106471650 + 106471630 106471670 41 GTGGTGGCGGGTGAGGAACGCGGCCAACAGGACGGGCTATG GTGGTGGCGGGTGAGGAACGCGGCAAACAGGACGGGCTATG < 41bp 0.571983409535761 0.890526221671378 0.8975551 0.8889431 prediction 0.637085624271234 Functional Gain - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106471650 chr2:106471654 synonymous SNV . 0 25 hm5C_associated_SNPs_100781 0 0 1 0 1 NCK2 chr2:106471745 5'GT 106471745 Upstream 92bp
chr15 25479266 25479266 1 + C A LUSC 25479262 + 25479242 25479282 41 GGCCCCAGGCCAGTGTACGTCAGCCAGGTGCTCAGCCCATG GGCCCCAGGCCAGTGTACGTCAGCAAGGTGCTCAGCCCATG < 41bp 0.494766971778055 0.818537125305157 0.40083787 0.8027719 prediction 0.637074250610313 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25479262 chr15:25479266 . . 0 25 hm5C_associated_SNPs_100782 0 0 0 0 2 SNHG14 chr15:25479205 3'AG 25479205 Downstream 62bp
chr15 25479266 25479266 1 + C A LUSC 25479262 + 25479242 25479282 41 GGCCCCAGGCCAGTGTACGTCAGCCAGGTGCTCAGCCCATG GGCCCCAGGCCAGTGTACGTCAGCAAGGTGCTCAGCCCATG < 41bp 0.494766971778055 0.818537125305157 0.40083787 0.8027719 prediction 0.637074250610313 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25479262 chr15:25479266 . . 0 25 hm5C_associated_SNPs_100782 0 0 0 0 2 SNHG14 chr15:25479350 5'GT 25479350 Upstream 85bp
chr7 34118705 34118705 1 + C A HNSC 34118701 + 34118681 34118721 41 AGCCTGCAGCAGCACCTCACCGTGCGCTGGAACGGCTCGCG AGCCTGCAGCAGCACCTCACCGTGAGCTGGAACGGCTCGCG < 41bp 0.557995130016186 0.876507407146522 0.8213217 0.8895664 prediction 0.637024554260673 Functional Gain - BMPER ENSG00000164619 CDS Human protein_coding chr7:34118701 chr7:34118705 nonsynonymous SNV 0.980 2 25 hm5C_associated_SNPs_100783 0 0 0 0 1 BMPER chr7:34118798 5'GT 34118798 Upstream 94bp
chr1 100613719 100613719 1 + T G LGG 100613716 + 100613696 100613736 41 GCCTTGGAGCAGTGGAATTCCATTATTTCCAGCGAATGAGT GCCTTGGAGCAGTGGAATTCCATGATTTCCAGCGAATGAGT < 41bp 0.479925077534161 0.818487458805462 0.14534047 0.13586706 prediction 0.636974917610925 Functional Gain - TRMT13 ENSG00000122435 CDS Human protein_coding chr1:100613716 chr1:100613719 nonsynonymous SNV 0.988 3 24 hm5C_associated_SNPs_100786 0 0 1 0 1 TRMT13 chr1:100613649 3'AG 100613649 Downstream 71bp
chr16 56672584 56672584 1 + C A rs192677443 56672580 + 56672560 56672600 41 CGCTGGCTGCTGGGCCCTACCAAGCCTTCCACGTGCGCCTT CGCTGGCTGCTGGGCCCTACCAAGACTTCCACGTGCGCCTT < 41bp 0.529934849010654 0.848414771991469 0.38487834 0.6721021 prediction 0.636959845961628 Functional Gain - MT1A ENSG00000205362 UTR5 Human protein_coding chr16:56672580 chr16:56672584 . . 0 25 hm5C_associated_SNPs_100787 0 0 0 0 1 MT1A chr16:56672678 5'GT 56672678 Upstream 95bp
chr9 132630652 132630652 1 + C A UCEC 132630648 + 132630628 132630668 41 CGAGGACGCTGATGTGGACACTGCCATGGCTGCCCTTGACG CGAGGACGCTGATGTGGACACTGCAATGGCTGCCCTTGACG < 41bp 0.410730571529107 0.818478767249379 0.061741203 0.47986487 prediction 0.636957534498758 Functional Gain - USP20 ENSG00000136878 CDS Human protein_coding chr9:132630648 chr9:132630652 synonymous SNV . 0 25 hm5C_associated_SNPs_100788 0 0 0 0 1 USP20 chr9:132630728 5'GT 132630728 Upstream 77bp
chr2 109473334 109473334 1 + C A PAAD 109473330 + 109473310 109473350 41 AAACCTTGTTTTTGGAGTATCAGGCTGTTCCAGTAATATTA AAACCTTGTTTTTGGAGTATCAGGATGTTCCAGTAATATTA < 41bp 0.453143541776622 0.818469948076673 0.67277366 0.890408 prediction 0.636939896153346 Functional Gain - CCDC138 ENSG00000163006 CDS Human protein_coding chr2:109473330 chr2:109473334 nonsynonymous SNV 0.981 4 25 hm5C_associated_SNPs_100789 0 0 1 0 2 CCDC138 chr2:109473250 3'AG 109473250 Downstream 85bp
chr2 109473334 109473334 1 + C A PAAD 109473330 + 109473310 109473350 41 AAACCTTGTTTTTGGAGTATCAGGCTGTTCCAGTAATATTA AAACCTTGTTTTTGGAGTATCAGGATGTTCCAGTAATATTA < 41bp 0.453143541776622 0.818469948076673 0.67277366 0.890408 prediction 0.636939896153346 Functional Gain - CCDC138 ENSG00000163006 CDS Human protein_coding chr2:109473330 chr2:109473334 nonsynonymous SNV 0.981 4 25 hm5C_associated_SNPs_100789 0 0 1 0 2 CCDC138 chr2:109473426 5'GT 109473426 Upstream 93bp
chr15 85448875 85448875 1 + C A rs8187758 85448871 + 85448851 85448891 41 ATTGCGTTCGAGTGGCTGGGCGAGCAGATCCGGGTAGGTAT ATTGCGTTCGAGTGGCTGGGCGAGAAGATCCGGGTAGGTAT < 41bp 0.4437107639887 0.818442751050168 0.8931936 0.88061416 prediction 0.636885502100335 Functional Gain - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85448871 chr15:85448875 nonsynonymous SNV 0.968 3 25 hm5C_associated_SNPs_100790 0 0 0 0 1 SLC28A1 chr15:85448883 5'GT 85448883 Upstream 9bp
chr1 57320621 57320621 1 + C A UCEC 57320617 + 57320597 57320637 41 TCTTGTCTTTGATGACTTGTCAGCCTGGGGTAACTGCACAG TCTTGTCTTTGATGACTTGTCAGCATGGGGTAACTGCACAG < 41bp 0.552789265482919 0.87113462963769 0.06822571 0.16222453 prediction 0.636690728309541 Functional Gain - C8A ENSG00000157131 CDS Human protein_coding chr1:57320617 chr1:57320621 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_100796 0 0 0 0 1 C8A chr1:57320651 5'GT 57320651 Upstream 31bp
chr3 43744063 43744063 1 + C A UCEC 43744059 + 43744039 43744079 41 GGATTCTTGGCTGCTGCTTACTCGCTGAAGTACCCATCAAG GGATTCTTGGCTGCTGCTTACTCGATGAAGTACCCATCAAG < 41bp 0.570751496789135 0.889043016498284 0.086345226 0.54868364 prediction 0.636583039418297 Functional Gain - ABHD5 ENSG00000011198 CDS Human protein_coding chr3:43744059 chr3:43744063 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_100798 0 0 1 0 1 ABHD5 chr3:43744079 5'GT 43744079 Upstream 17bp
chr6 144507849 144507849 1 + C A BRCA 144507845 + 144507825 144507865 41 GACGGGGACGATGAGTTTGACTCGCCCCACGAGGACATCGT GACGGGGACGATGAGTTTGACTCGACCCACGAGGACATCGT < 41bp 0.553039042263751 0.871292852364982 0.1728018 0.368962 prediction 0.636507620202462 Functional Gain - STX11 ENSG00000135604 CDS Human protein_coding chr6:144507845 chr6:144507849 nonsynonymous SNV 0.067 0 25 hm5C_associated_SNPs_100801 0 0 0 0 1 STX11 chr6:144507760 3'AG 144507760 Downstream 90bp
chr1 206230897 206230897 1 + C A LIHC 206230893 + 206230873 206230913 41 TGGATCTACATGGGCTTCAACAGCCACCTGTTACCGCGGCC TGGATCTACATGGGCTTCAACAGCAACCTGTTACCGCGGCC < 41bp 0.448640679873885 0.818234437905924 0.20183685 0.1107609 prediction 0.636468875811847 Functional Gain - AVPR1B ENSG00000198049 CDS Human protein_coding chr1:206230893 chr1:206230897 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_100803 0 0 0 0 1 AVPR1B chr1:206230808 3'AG 206230808 Downstream 90bp
chr7 36320746 36320746 1 + C A UCEC 36320742 + 36320722 36320762 41 AGTTCTGCACGGAGCTAAACCAGCCGACCCTGCCCAACATC AGTTCTGCACGGAGCTAAACCAGCAGACCCTGCCCAACATC < 41bp 0.574979930109207 0.893200592480506 0.7516593 0.42909625 prediction 0.636441324742597 Functional Gain - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36320742 chr7:36320746 nonsynonymous SNV 0.977 5 25 hm5C_associated_SNPs_100804 0 0 0 0 2 EEPD1 chr7:36320724 3'AG 36320724 Downstream 23bp
chr7 36320746 36320746 1 + C A UCEC 36320742 + 36320722 36320762 41 AGTTCTGCACGGAGCTAAACCAGCCGACCCTGCCCAACATC AGTTCTGCACGGAGCTAAACCAGCAGACCCTGCCCAACATC < 41bp 0.574979930109207 0.893200592480506 0.7516593 0.42909625 prediction 0.636441324742597 Functional Gain - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36320742 chr7:36320746 nonsynonymous SNV 0.977 5 25 hm5C_associated_SNPs_100804 0 0 0 0 2 EEPD1 chr7:36320834 5'GT 36320834 Upstream 89bp
chr1 12144606 12144606 1 + T G UCEC 12144604 + 12144584 12144624 41 AGGTGCTGTTACCGCTGCCCCATGGGTGAGTGGGGGCGTTG AGGTGCTGTTACCGCTGCCCCAGGGGTGAGTGGGGGCGTTG < 41bp 0.500896340574803 0.819092677007075 0.2774794 0.8982111 prediction 0.636392672864543 Functional Gain - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12144604 chr1:12144606 nonsynonymous SNV 0.008 2 23 hm5C_associated_SNPs_100806 0 0 0 0 2 TNFRSF8 chr1:12144521 3'AG 12144521 Downstream 86bp
chr1 12144606 12144606 1 + T G UCEC 12144604 + 12144584 12144624 41 AGGTGCTGTTACCGCTGCCCCATGGGTGAGTGGGGGCGTTG AGGTGCTGTTACCGCTGCCCCAGGGGTGAGTGGGGGCGTTG < 41bp 0.500896340574803 0.819092677007075 0.2774794 0.8982111 prediction 0.636392672864543 Functional Gain - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12144604 chr1:12144606 nonsynonymous SNV 0.008 2 23 hm5C_associated_SNPs_100806 0 0 0 0 2 TNFRSF8 chr1:12144608 5'GT 12144608 Upstream 3bp
chr16 2203418 2203418 1 + C A STAD 2203414 + 2203394 2203434 41 GTCGAGGGGCCTCCTGCTGCCGCCCTTGAACCTGGCTGAGC GTCGAGGGGCCTCCTGCTGCCGCCATTGAACCTGGCTGAGC < 41bp 0.557485084271088 0.875666304369142 0.12691283 0.8084557 prediction 0.636362440196108 Functional Gain - RAB26 ENSG00000167964 CDS Human protein_coding chr16:2203414 chr16:2203418 nonsynonymous SNV 0.196 1 25 hm5C_associated_SNPs_100808 0 0 0 0 1 RAB26 chr16:2203320 3'AG 2203320 Downstream 99bp
chr7 43827557 43827557 1 + C A GBM 43827553 + 43827533 43827573 41 GGTGTTGGCCGAGCCGGCTCCGTGCGGATGAGGGACTTGCG GGTGTTGGCCGAGCCGGCTCCGTGAGGATGAGGGACTTGCG < 41bp 0.435551425310073 0.818161563035925 0.35133642 0.7748252 prediction 0.63632312607185 Functional Gain - BLVRA ENSG00000106605 CDS Human protein_coding chr7:43827553 chr7:43827557 synonymous SNV . 0 25 hm5C_associated_SNPs_100809 0 0 1 0 2 BLVRA chr7:43827503 3'AG 43827503 Downstream 55bp
chr7 43827557 43827557 1 + C A GBM 43827553 + 43827533 43827573 41 GGTGTTGGCCGAGCCGGCTCCGTGCGGATGAGGGACTTGCG GGTGTTGGCCGAGCCGGCTCCGTGAGGATGAGGGACTTGCG < 41bp 0.435551425310073 0.818161563035925 0.35133642 0.7748252 prediction 0.63632312607185 Functional Gain - BLVRA ENSG00000106605 CDS Human protein_coding chr7:43827553 chr7:43827557 synonymous SNV . 0 25 hm5C_associated_SNPs_100809 0 0 1 0 2 BLVRA chr7:43827624 5'GT 43827624 Upstream 68bp
chr11 75438535 75438535 1 + C A LUAD 75438531 + 75438511 75438551 41 GGAACTACATTGCGGGCTTCCACCCCCATGGAGTCCTGGCA GGAACTACATTGCGGGCTTCCACCACCATGGAGTCCTGGCA < 41bp 0.403750882492869 0.818011734401513 0.19875827 0.517246 prediction 0.636023468803027 Functional Gain - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75438531 chr11:75438535 nonsynonymous SNV 0.987 4 25 hm5C_associated_SNPs_100816 0 0 1 0 1 MOGAT2 chr11:75438480 3'AG 75438480 Downstream 56bp
chr19 54609303 54609303 1 + C A rs587640804 54609299 + 54609279 54609319 41 TCCGTCATGATCAACAAGGCCACGCCCTACAACTACCCAGG TCCGTCATGATCAACAAGGCCACGACCTACAACTACCCAGG < 41bp 0.439882687438357 0.818003545263203 0.043355674 0.023346305 prediction 0.636007090526407 Functional Gain - NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54609299 chr19:54609303 nonsynonymous SNV 0.941 4 25 hm5C_associated_SNPs_100817 0 0 1 0 2 NDUFA3 chr19:54609241 3'AG 54609241 Downstream 63bp
chr19 54609303 54609303 1 + C A rs587640804 54609299 + 54609279 54609319 41 TCCGTCATGATCAACAAGGCCACGCCCTACAACTACCCAGG TCCGTCATGATCAACAAGGCCACGACCTACAACTACCCAGG < 41bp 0.439882687438357 0.818003545263203 0.043355674 0.023346305 prediction 0.636007090526407 Functional Gain - NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54609299 chr19:54609303 nonsynonymous SNV 0.941 4 25 hm5C_associated_SNPs_100817 0 0 1 0 2 NDUFA3 chr19:54609318 5'GT 54609318 Upstream 16bp
chr20 9495539 9495539 1 + C A LUSC 9495535 + 9495515 9495555 41 AGAGGGGTCCCCAGCATCGACAGACTTCGAGTTCTCCTGAT AGAGGGGTCCCCAGCATCGACAGAATTCGAGTTCTCCTGAT < 41bp 0.555198509938048 0.873199009277727 0.48398176 0.41903043 prediction 0.63600099867936 Functional Gain - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9495535 chr20:9495539 nonsynonymous SNV 0.918 1 25 hm5C_associated_SNPs_100818 0 0 0 0 1 LAMP5 chr20:9495563 5'GT 9495563 Upstream 25bp
chr1 13936974 13936974 1 + C A rs34384359 13936970 + 13936950 13936990 41 CCACGCGCAAGAACAAAGTCCAAGCGCCACAGCCTCAAACG CCACGCGCAAGAACAAAGTCCAAGAGCCACAGCCTCAAACG < 41bp 0.440609440062303 0.81788097907813 0.2814971 0.29060116 prediction 0.635761958156261 Functional Gain - PDPN ENSG00000162493 CDS Human protein_coding chr1:13936970 chr1:13936974 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_100821 0 0 0 0 2 PDPN chr1:13936882 3'AG 13936882 Downstream 93bp
chr1 13936974 13936974 1 + C A rs34384359 13936970 + 13936950 13936990 41 CCACGCGCAAGAACAAAGTCCAAGCGCCACAGCCTCAAACG CCACGCGCAAGAACAAAGTCCAAGAGCCACAGCCTCAAACG < 41bp 0.440609440062303 0.81788097907813 0.2814971 0.29060116 prediction 0.635761958156261 Functional Gain - PDPN ENSG00000162493 CDS Human protein_coding chr1:13936970 chr1:13936974 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_100821 0 0 0 0 2 PDPN chr1:13937011 5'GT 13937011 Upstream 38bp
chr20 30380588 30380588 1 + C A UCEC 30380584 + 30380564 30380604 41 AATCACCGTCCCCAAGTCACCAGCCTTTGCATTGAAGAACA AATCACCGTCCCCAAGTCACCAGCATTTGCATTGAAGAACA < 41bp 0.421562913116167 0.817874289499044 0.049752295 0.03510043 prediction 0.635748578998088 Functional Gain - TPX2 ENSG00000088325 CDS Human protein_coding chr20:30380584 chr20:30380588 synonymous SNV . 0 25 hm5C_associated_SNPs_100822 0 0 1 0 1 TPX2 chr20:30380633 5'GT 30380633 Upstream 46bp
chr6 143792727 143792727 1 + C A UCEC 143792723 + 143792703 143792743 41 AATTGATCACTGTCATTAAACAAGCTGTGCAGAAGGTTTTA AATTGATCACTGTCATTAAACAAGATGTGCAGAAGGTTTTA < 41bp 0.44821555970058 0.817862820762054 0.4379071 0.4218928 prediction 0.635725641524107 Functional Gain - PEX3 ENSG00000034693 CDS Human protein_coding chr6:143792723 chr6:143792727 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_100823 0 0 1 0 2 PEX3 chr6:143792694 3'AG 143792694 Downstream 34bp
chr6 143792727 143792727 1 + C A UCEC 143792723 + 143792703 143792743 41 AATTGATCACTGTCATTAAACAAGCTGTGCAGAAGGTTTTA AATTGATCACTGTCATTAAACAAGATGTGCAGAAGGTTTTA < 41bp 0.44821555970058 0.817862820762054 0.4379071 0.4218928 prediction 0.635725641524107 Functional Gain - PEX3 ENSG00000034693 CDS Human protein_coding chr6:143792723 chr6:143792727 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_100823 0 0 1 0 2 PEX3 chr6:143792748 5'GT 143792748 Upstream 22bp
chr18 23713962 23713962 1 + C A LUAD 23713958 + 23713938 23713978 41 TCGATATGACAGGGCGATCACTGTCTTCTCCCCAGACGGAC TCGATATGACAGGGCGATCACTGTATTCTCCCCAGACGGAC < 41bp 0.496416464299371 0.81782985296297 0.058333337 0.14388096 prediction 0.635659705925939 Functional Gain - PSMA8 ENSG00000154611 CDS Human protein_coding chr18:23713958 chr18:23713962 synonymous SNV . 0 25 hm5C_associated_SNPs_100825 0 0 0 0 1 PSMA8 chr18:23714031 5'GT 23714031 Upstream 70bp
chr1 154298114 154298114 1 + C A rs552544847 154298110 + 154298090 154298130 41 TGGGGAGCCGAGCCGAGCGCCCCCCGCCCCAGCCCCCGGCA TGGGGAGCCGAGCCGAGCGCCCCCAGCCCCAGCCCCCGGCA < 41bp 0.528704543255404 0.846512500159134 0.28332227 0.29802823 prediction 0.635615913807461 Functional Gain - ATP8B2 ENSG00000143515 UTR5 Human protein_coding chr1:154298110 chr1:154298114 . . 0 25 hm5C_associated_SNPs_100827 0 0 1 0 1 ATP8B2 chr1:154298178 5'GT 154298178 Upstream 65bp
chr17 46134420 46134420 1 + C A UCEC 46134416 + 46134396 46134436 41 GCCTAGTGGGGAGGACCAGACGGCCCTGTCCCTGGAAGAGT GCCTAGTGGGGAGGACCAGACGGCACTGTCCCTGGAAGAGT < 41bp 0.431966577081533 0.81779545439124 0.5663524 0.515971 prediction 0.635590908782479 Functional Gain - NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46134416 chr17:46134420 synonymous SNV . 0 25 hm5C_associated_SNPs_100828 0 0 1 0 2 NFE2L1 chr17:46134394 3'AG 46134394 Downstream 27bp
chr17 46134420 46134420 1 + C A UCEC 46134416 + 46134396 46134436 41 GCCTAGTGGGGAGGACCAGACGGCCCTGTCCCTGGAAGAGT GCCTAGTGGGGAGGACCAGACGGCACTGTCCCTGGAAGAGT < 41bp 0.431966577081533 0.81779545439124 0.5663524 0.515971 prediction 0.635590908782479 Functional Gain - NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46134416 chr17:46134420 synonymous SNV . 0 25 hm5C_associated_SNPs_100828 0 0 1 0 2 NFE2L1 chr17:46134483 5'GT 46134483 Upstream 64bp
chr3 10967702 10967702 1 + C A LIHC 10967698 + 10967678 10967718 41 CCCTCGCTCCAGGCCCCGGCCTGGCCTTTATTGCGTACCCC CCCTCGCTCCAGGCCCCGGCCTGGACTTTATTGCGTACCCC < 41bp 0.449621016250774 0.817777488705418 0.26616102 0.44937265 prediction 0.635554977410836 Functional Gain - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10967698 chr3:10967702 nonsynonymous SNV 0.723 4 25 hm5C_associated_SNPs_100830 0 0 1 0 1 SLC6A11 chr3:10967690 3'AG 10967690 Downstream 13bp
chr5 161277843 161277843 1 + C A rs113886269 161277839 + 161277819 161277859 41 GAGGAAAAGTCCAGGTCTGTCTGACTGTCTTTGGGCCTGGA GAGGAAAAGTCCAGGTCTGTCTGAATGTCTTTGGGCCTGGA < 41bp 0.566996028260035 0.884756585044103 0.14446515 0.19469425 prediction 0.635521113568136 Functional Gain - GABRA1 ENSG00000022355 CDS Human protein_coding chr5:161277839 chr5:161277843 nonsynonymous SNV 0.987 0 25 hm5C_associated_SNPs_100832 1 0 0 0 2 GABRA1 chr5:161277802 3'AG 161277802 Downstream 42bp
chr5 161277843 161277843 1 + C A rs113886269 161277839 + 161277819 161277859 41 GAGGAAAAGTCCAGGTCTGTCTGACTGTCTTTGGGCCTGGA GAGGAAAAGTCCAGGTCTGTCTGAATGTCTTTGGGCCTGGA < 41bp 0.566996028260035 0.884756585044103 0.14446515 0.19469425 prediction 0.635521113568136 Functional Gain - GABRA1 ENSG00000022355 CDS Human protein_coding chr5:161277839 chr5:161277843 nonsynonymous SNV 0.987 0 25 hm5C_associated_SNPs_100832 1 0 0 0 2 GABRA1 chr5:161277890 5'GT 161277890 Upstream 48bp
chr14 24538031 24538031 1 + C A LUAD 24538027 + 24538007 24538047 41 GCTCTAGCTCCATGGCCTCCCAAGCCAGTGGCTGTGCCCAG GCTCTAGCTCCATGGCCTCCCAAGACAGTGGCTGTGCCCAG < 41bp 0.446067016962226 0.817680247207652 0.22574452 0.17825037 prediction 0.635360494415304 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24538027 chr14:24538031 nonsynonymous SNV 0.958 3 25 hm5C_associated_SNPs_100834 0 0 0 0 1 CARMIL3 chr14:24537995 3'AG 24537995 Downstream 37bp
chr15 79044487 79044487 1 + C A rs139813293 79044483 + 79044463 79044503 41 TGTGTTAAAAGGAGCCCACGCAGCCGACAGCAGCAGGAGCA TGTGTTAAAAGGAGCCCACGCAGCAGACAGCAGCAGGAGCA < 41bp 0.487817856083799 0.8176698914359 0.49108425 0.7120275 prediction 0.6353397828718 Functional Gain - LOC646938 ENSG00000238166 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:79044483 chr15:79044487 . . 0 25 hm5C_associated_SNPs_100836 0 0 0 1 1 LOC646938 chr15:79044579 5'GT 79044579 Upstream 93bp
chr4 123301233 123301233 1 + C A LGG 123301229 + 123301209 123301249 41 ACCTCTAGGTGAGAAAATGGCTAGCAACAATCATTGGTTTC ACCTCTAGGTGAGAAAATGGCTAGAAACAATCATTGGTTTC < 41bp 0.43796484944921 0.817593103147096 0.14249441 0.14495966 prediction 0.635186206294192 Functional Gain - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123301229 chr4:123301233 nonsynonymous SNV 0.982 0 25 hm5C_associated_SNPs_100840 0 0 0 0 1 ADAD1 chr4:123301217 3'AG 123301217 Downstream 17bp
chr16 8829607 8829607 1 + T G PAAD 8829605 + 8829585 8829625 41 CCTCAAGGGGTCATGGCCTCCATGTTGCTCGCCCAGCGCCT CCTCAAGGGGTCATGGCCTCCAGGTTGCTCGCCCAGCGCCT < 41bp 0.483272695185399 0.81746539147163 0.12980142 0.873056 prediction 0.63493078294326 Functional Gain - ABAT ENSG00000183044 CDS Human protein_coding chr16:8829605 chr16:8829607 nonsynonymous SNV 0.562 0 23 hm5C_associated_SNPs_100845 0 0 1 0 1 ABAT chr16:8829666 5'GT 8829666 Upstream 60bp
chr19 42221641 42221641 1 + T G LUSC 42221639 + 42221619 42221659 41 GACCACAGCGACCCAGTCATCCTGAATGTCCTCTGTGAGTA GACCACAGCGACCCAGTCATCCGGAATGTCCTCTGTGAGTA < 41bp 0.500319529988682 0.817751439964731 0.22757512 0.57818717 prediction 0.634863819952099 Functional Gain - CEACAM5 ENSG00000105388 CDS Human protein_coding chr19:42221639 chr19:42221641 nonsynonymous SNV 0.011 2 23 hm5C_associated_SNPs_100847 0 0 0 0 1 CEACAM5 chr19:42221652 5'GT 42221652 Upstream 12bp
chr7 143079922 143079922 1 + T G rs144879938 143079919 + 143079899 143079939 41 ATCTGGATATGTGCCCCCACCAGTGGCCACTCCATTCAGTT ATCTGGATATGTGCCCCCACCAGGGGCCACTCCATTCAGTT < 41bp 0.434438666544561 0.817427899685031 0.020879745 0.82884175 prediction 0.634855799370062 Functional Gain - ZYX ENSG00000159840 CDS Human protein_coding chr7:143079919 chr7:143079922 nonsynonymous SNV 0.961 1 24 hm5C_associated_SNPs_100848 0 0 1 0 1 ZYX chr7:143079894 3'AG 143079894 Downstream 29bp
chr12 132281892 132281892 1 + C A COAD 132281888 + 132281868 132281908 41 CCTGTGGAGAGTCGGGGCTCCAGCCAGGAGCGCTCCAGGTA CCTGTGGAGAGTCGGGGCTCCAGCAAGGAGCGCTCCAGGTA < 41bp 0.555787419934133 0.873175436896305 0.3844806 0.38532227 prediction 0.634776033924342 Functional Gain - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132281888 chr12:132281892 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_100852 0 0 1 0 1 SFSWAP chr12:132281905 5'GT 132281905 Upstream 14bp
chrX 99919868 99919868 1 + T G SKCM 99919865 + 99919845 99919885 41 CGCTGTGACTACAGCTGTTCCAGTGGCTACCACCTGGAAGG CGCTGTGACTACAGCTGTTCCAGGGGCTACCACCTGGAAGG < 41bp 0.570724568244666 0.888090816777286 0.5629497 0.91341615 prediction 0.634732497065239 Functional Gain - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99919865 chrX:99919868 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_100855 0 0 0 0 2 SRPX2 chrX:99919771 3'AG 99919771 Downstream 98bp
chrX 99919868 99919868 1 + T G SKCM 99919865 + 99919845 99919885 41 CGCTGTGACTACAGCTGTTCCAGTGGCTACCACCTGGAAGG CGCTGTGACTACAGCTGTTCCAGGGGCTACCACCTGGAAGG < 41bp 0.570724568244666 0.888090816777286 0.5629497 0.91341615 prediction 0.634732497065239 Functional Gain - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99919865 chrX:99919868 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_100855 0 0 0 0 2 SRPX2 chrX:99919947 5'GT 99919947 Upstream 80bp
chr18 43698193 43698193 1 + C A rs115018280 43698189 + 43698169 43698209 41 CATGGAGAGTGTGAATTTTTCCCCCGCCAATCTCTCTAGCA CATGGAGAGTGTGAATTTTTCCCCAGCCAATCTCTCTAGCA < 41bp 0.424937905947325 0.817357048096637 0.044214994 0.07068947 prediction 0.634714096193274 Functional Gain - HAUS1 ENSG00000152240 CDS Human protein_coding chr18:43698189 chr18:43698193 synonymous SNV . 0 25 hm5C_associated_SNPs_100856 0 0 1 0 2 HAUS1 chr18:43698147 3'AG 43698147 Downstream 47bp
chr18 43698193 43698193 1 + C A rs115018280 43698189 + 43698169 43698209 41 CATGGAGAGTGTGAATTTTTCCCCCGCCAATCTCTCTAGCA CATGGAGAGTGTGAATTTTTCCCCAGCCAATCTCTCTAGCA < 41bp 0.424937905947325 0.817357048096637 0.044214994 0.07068947 prediction 0.634714096193274 Functional Gain - HAUS1 ENSG00000152240 CDS Human protein_coding chr18:43698189 chr18:43698193 synonymous SNV . 0 25 hm5C_associated_SNPs_100856 0 0 1 0 2 HAUS1 chr18:43698282 5'GT 43698282 Upstream 90bp
chr13 70681819 70681819 1 + C A LUSC 70681815 + 70681795 70681835 41 GCTTCACATCGAAGTCTTTTCGCCCAGAGCCTGACATGCTT GCTTCACATCGAAGTCTTTTCGCCAAGAGCCTGACATGCTT < 41bp 0.560377115482283 0.877704168247663 0.03031531 0.45913255 prediction 0.634654105530761 Functional Gain - KLHL1 ENSG00000150361 CDS Human antisense chr13:70681815 chr13:70681819 nonsynonymous SNV 0.992 3 25 hm5C_associated_SNPs_100859 0 0 0 2 1 ATXN8OS chr13:70681873 5'GT 70681873 Upstream 55bp
chr21 45711065 45711065 1 + C A STAD 45711061 + 45711041 45711081 41 CCTCGGGCCTTCCACCTGGCCTGCCTGTCCCCTCCGCTCCG CCTCGGGCCTTCCACCTGGCCTGCATGTCCCCTCCGCTCCG < 41bp 0.57572083550758 0.893038326278902 0.0985336 0.09888068 prediction 0.634634981542644 Functional Gain - AIRE ENSG00000160224 CDS Human protein_coding chr21:45711061 chr21:45711065 nonsynonymous SNV 0.865 4 25 hm5C_associated_SNPs_100860 0 0 0 0 2 AIRE chr21:45710978 3'AG 45710978 Downstream 88bp
chr21 45711065 45711065 1 + C A STAD 45711061 + 45711041 45711081 41 CCTCGGGCCTTCCACCTGGCCTGCCTGTCCCCTCCGCTCCG CCTCGGGCCTTCCACCTGGCCTGCATGTCCCCTCCGCTCCG < 41bp 0.57572083550758 0.893038326278902 0.0985336 0.09888068 prediction 0.634634981542644 Functional Gain - AIRE ENSG00000160224 CDS Human protein_coding chr21:45711061 chr21:45711065 nonsynonymous SNV 0.865 4 25 hm5C_associated_SNPs_100860 0 0 0 0 2 AIRE chr21:45711093 5'GT 45711093 Upstream 29bp
chrX 152113927 152113927 1 + C A COAD 152113923 + 152113903 152113943 41 ACCCAGCTGTACCCGCTCAGCAACCTGCAGATCCCAGCACC ACCCAGCTGTACCCGCTCAGCAACATGCAGATCCCAGCACC < 41bp 0.444587350389718 0.817224458170703 0.23323229 0.23016202 prediction 0.634448916341405 Functional Gain - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152113923 chrX:152113927 nonsynonymous SNV 0.355 3 25 hm5C_associated_SNPs_100869 0 0 0 0 1 ZNF185 chrX:152114008 5'GT 152114008 Upstream 82bp
chr13 114201650 114201650 1 + C A UCEC 114201646 + 114201626 114201666 41 TTCCCCACGTTTGTGGCGTACGAGCTCACGGTGCTGGTGTT TTCCCCACGTTTGTGGCGTACGAGATCACGGTGCTGGTGTT < 41bp 0.564706045554281 0.881871490922402 0.42312336 0.47407466 prediction 0.634330890736241 Functional Gain - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114201646 chr13:114201650 nonsynonymous SNV 0.061 1 25 hm5C_associated_SNPs_100872 0 0 1 0 2 TMCO3 chr13:114201615 3'AG 114201615 Downstream 36bp
chr13 114201650 114201650 1 + C A UCEC 114201646 + 114201626 114201666 41 TTCCCCACGTTTGTGGCGTACGAGCTCACGGTGCTGGTGTT TTCCCCACGTTTGTGGCGTACGAGATCACGGTGCTGGTGTT < 41bp 0.564706045554281 0.881871490922402 0.42312336 0.47407466 prediction 0.634330890736241 Functional Gain - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114201646 chr13:114201650 nonsynonymous SNV 0.061 1 25 hm5C_associated_SNPs_100872 0 0 1 0 2 TMCO3 chr13:114201694 5'GT 114201694 Upstream 45bp
chr11 44102762 44102762 1 + C A STAD 44102758 + 44102738 44102778 41 ATGTCTGGGCTCCGCTTTGGCACGCTGTACACAGAAAACCA ATGTCTGGGCTCCGCTTTGGCACGATGTACACAGAAAACCA < 41bp 0.559535700367818 0.876697899443347 0.38744938 0.2929256 prediction 0.634324398151057 Functional Gain - ACCS ENSG00000110455 CDS Human protein_coding chr11:44102758 chr11:44102762 nonsynonymous SNV 0.822 5 25 hm5C_associated_SNPs_100873 0 0 1 0 1 ACCS chr11:44102729 3'AG 44102729 Downstream 34bp
chr17 74523827 74523827 1 + C A rs144615545 74523823 + 74523803 74523843 41 GGTGGCCAAGGCAGGTGGAGCTAGCGGTCGAGGTTTCTGGA GGTGGCCAAGGCAGGTGGAGCTAGAGGTCGAGGTTTCTGGA < 41bp 0.516584135700411 0.833651926147777 0.89610684 0.8970122 prediction 0.634135580894731 Functional Gain - CYGB ENSG00000161544 UTR3 Human protein_coding chr17:74523823 chr17:74523827 . . 0 25 hm5C_associated_SNPs_100878 0 0 0 0 1 CYGB chr17:74523915 5'GT 74523915 Upstream 89bp
chr7 156976675 156976675 1 + C A COAD 156976671 + 156976651 156976691 41 CAGCGCGAGCTGTCACGACTCAGCCAGTGACTCTGAGGAGG CAGCGCGAGCTGTCACGACTCAGCAAGTGACTCTGAGGAGG < 41bp 0.45164681681375 0.817050959167487 0.06508562 0.2868551 prediction 0.634101918334974 Functional Gain - UBE3C ENSG00000009335 CDS Human protein_coding chr7:156976671 chr7:156976675 synonymous SNV . 0 25 hm5C_associated_SNPs_100879 0 0 1 0 1 UBE3C chr7:156976723 5'GT 156976723 Upstream 49bp
chr22 25246291 25246291 1 + C A LIHC 25246287 + 25246267 25246307 41 TCCAGGAGAATGTGCGGAAGCTGCCGAAGCTGCCCAACTTG TCCAGGAGAATGTGCGGAAGCTGCAGAAGCTGCCCAACTTG < 41bp 0.417312228750086 0.816974541789024 0.4362561 0.89361095 prediction 0.633949083578049 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25246287 chr22:25246291 nonsynonymous SNV 0.948 1 25 hm5C_associated_SNPs_100884 0 0 0 0 1 SGSM1 chr22:25246247 3'AG 25246247 Downstream 45bp
chr8 110573135 110573135 1 + C A COAD 110573131 + 110573111 110573151 41 ATGGGAAGAAGAAGAAGATGCAGCCTGGCAAGCAGAAGAAG ATGGGAAGAAGAAGAAGATGCAGCATGGCAAGCAGAAGAAG < 41bp 0.426704857068926 0.816881051756982 0.116149396 0.113756806 prediction 0.633762103513964 Functional Gain - EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110573131 chr8:110573135 synonymous SNV . 0 25 hm5C_associated_SNPs_100889 0 0 0 2 1 EBAG9 chr8:110573067 3'AG 110573067 Downstream 69bp
chr7 65154321 65154321 1 + T G UCEC 65154318 + 65154298 65154338 41 GCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAA GCTCTTCATGAACTCTTATGCTGGACTAATGTTTCAACCAA < 41bp 0.488105581282481 0.816809801207346 0.21320808 0.20279327 prediction 0.633619602414691 Functional Gain - INTS4P2 ENSG00000232270 ncRNA_exonic Human other chr7:65154318 chr7:65154321 . . 0 24 hm5C_associated_SNPs_100894 0 0 0 3 2 INTS4P2 chr7:65154274 3'AG 65154274 Downstream 48bp
chr7 65154321 65154321 1 + T G UCEC 65154318 + 65154298 65154338 41 GCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAA GCTCTTCATGAACTCTTATGCTGGACTAATGTTTCAACCAA < 41bp 0.488105581282481 0.816809801207346 0.21320808 0.20279327 prediction 0.633619602414691 Functional Gain - INTS4P2 ENSG00000232270 ncRNA_exonic Human other chr7:65154318 chr7:65154321 . . 0 24 hm5C_associated_SNPs_100894 0 0 0 3 2 INTS4P2 chr7:65154416 5'GT 65154416 Upstream 96bp
chr19 1434803 1434803 1 + C A COAD 1434799 + 1434779 1434819 41 AGACCCCAGCCAGCAGCCTCCTTCCTACGGGGGTCCCTCCG AGACCCCAGCCAGCAGCCTCCTTCATACGGGGGTCCCTCCG < 41bp 0.430326900864115 0.816809384669956 0.12737617 0.9191154 prediction 0.633618769339912 Functional Gain - DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434799 chr19:1434803 synonymous SNV . 0 25 hm5C_associated_SNPs_100895 0 0 1 0 1 DAZAP1 chr19:1434736 3'AG 1434736 Downstream 68bp
chr19 4305974 4305974 1 + C A UCEC 4305970 + 4305950 4305990 41 TGAGGAAGATCATCAAAACACTGGCTGTGAAGAATGAAGAA TGAGGAAGATCATCAAAACACTGGATGTGAAGAATGAAGAA < 41bp 0.574671845525947 0.891462212093864 0.098002374 0.12217656 prediction 0.633580733135834 Functional Gain - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4305970 chr19:4305974 nonsynonymous SNV 0.137 4 25 hm5C_associated_SNPs_100896 0 0 1 0 3 FSD1 chr19:4305943 3'AG 4305943 Downstream 32bp
chr19 4305974 4305974 1 + C A UCEC 4305970 + 4305950 4305990 41 TGAGGAAGATCATCAAAACACTGGCTGTGAAGAATGAAGAA TGAGGAAGATCATCAAAACACTGGATGTGAAGAATGAAGAA < 41bp 0.574671845525947 0.891462212093864 0.098002374 0.12217656 prediction 0.633580733135834 Functional Gain - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4305970 chr19:4305974 nonsynonymous SNV 0.137 4 25 hm5C_associated_SNPs_100896 0 0 1 0 3 FSD1 chr19:4306038 5'GT 4306038 Upstream 65bp
chr19 4305974 4305974 1 + C A UCEC 4305970 + 4305950 4305990 41 TGAGGAAGATCATCAAAACACTGGCTGTGAAGAATGAAGAA TGAGGAAGATCATCAAAACACTGGATGTGAAGAATGAAGAA < 41bp 0.574671845525947 0.891462212093864 0.098002374 0.12217656 prediction 0.633580733135834 Functional Gain - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4305970 chr19:4305974 nonsynonymous SNV 0.137 4 25 hm5C_associated_SNPs_100896 0 0 1 0 3 FSD1 chr19:4306066 5'GT 4306066 Upstream 93bp
chr8 126369489 126369489 1 + C A rs184167565 126369485 + 126369465 126369505 41 TCTTCAAGCTGACAGAGAAGCTGACGGAACAGAAGGAGTGG TCTTCAAGCTGACAGAGAAGCTGAAGGAACAGAAGGAGTGG < 41bp 0.438181435962873 0.816764851978755 0.18601513 0.39957607 prediction 0.633529703957509 Functional Gain - NSMCE2 ENSG00000156831 CDS Human protein_coding chr8:126369485 chr8:126369489 nonsynonymous SNV 0.860 0 25 hm5C_associated_SNPs_100898 0 0 1 0 2 NSMCE2 chr8:126369461 3'AG 126369461 Downstream 29bp
chr8 126369489 126369489 1 + C A rs184167565 126369485 + 126369465 126369505 41 TCTTCAAGCTGACAGAGAAGCTGACGGAACAGAAGGAGTGG TCTTCAAGCTGACAGAGAAGCTGAAGGAACAGAAGGAGTGG < 41bp 0.438181435962873 0.816764851978755 0.18601513 0.39957607 prediction 0.633529703957509 Functional Gain - NSMCE2 ENSG00000156831 CDS Human protein_coding chr8:126369485 chr8:126369489 nonsynonymous SNV 0.860 0 25 hm5C_associated_SNPs_100898 0 0 1 0 2 NSMCE2 chr8:126369561 5'GT 126369561 Upstream 73bp
chr3 89448578 89448578 1 + C A LUAD 89448574 + 89448554 89448594 41 ATTCCAAATCCGAGCCCGAACAGCCGCTGGATATGGGACGA ATTCCAAATCCGAGCCCGAACAGCAGCTGGATATGGGACGA < 41bp 0.438548073057271 0.816711177678827 0.38976732 0.5380473 prediction 0.633422355357655 Functional Gain - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89448574 chr3:89448578 synonymous SNV . 0 25 hm5C_associated_SNPs_100901 0 0 0 0 1 EPHA3 chr3:89448630 5'GT 89448630 Upstream 53bp
chr2 99226303 99226303 1 + C A LAML 99226299 + 99226279 99226319 41 CAGGGATGCGGCAAGACACACAGCCGGAGCGAAACGCTACA CAGGGATGCGGCAAGACACACAGCAGGAGCGAAACGCTACA < 41bp 0.559035548803105 0.875736743033241 0.3965327 0.6883966 prediction 0.633402388460272 Functional Gain - UNC50 ENSG00000115446 CDS Human protein_coding chr2:99226299 chr2:99226303 synonymous SNV . 0 25 hm5C_associated_SNPs_100903 0 0 1 0 1 UNC50 chr2:99226219 3'AG 99226219 Downstream 85bp
chr4 184585067 184585067 1 + C A COAD 184585063 + 184585043 184585083 41 TCCCTGTGGAATTATGTTGCCGGCCTATGGCCTTTGTTACT TCCCTGTGGAATTATGTTGCCGGCATATGGCCTTTGTTACT < 41bp 0.432275085788915 0.816658072153868 0.30062366 0.4999352 prediction 0.633316144307736 Functional Gain - TRAPPC11 ENSG00000168538 CDS Human protein_coding chr4:184585063 chr4:184585067 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_100904 0 0 1 0 1 TRAPPC11 chr4:184585000 3'AG 184585000 Downstream 68bp
chr6 117246806 117246806 1 + C A rs137956032 117246802 + 117246782 117246822 41 CCAGTTCCCTGCTGGGAACACAGACAACATGCCGCTCACAG CCAGTTCCCTGCTGGGAACACAGAAAACATGCCGCTCACAG < 41bp 0.43623515297858 0.816598492618356 0.043373317 0.08558795 prediction 0.633196985236712 Functional Gain - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117246802 chr6:117246806 nonsynonymous SNV 0.522 0 25 hm5C_associated_SNPs_100905 0 0 0 0 1 RFX6 chr6:117246822 5'GT 117246822 Upstream 17bp
chr1 224922315 224922315 1 + T G SKCM 224922312 + 224922292 224922332 41 AGAACTAGCCTACGACCCACCGGTGGTCATGAATGCCGACA AGAACTAGCCTACGACCCACCGGGGGTCATGAATGCCGACA < 41bp 0.562845084583973 0.879383228592653 0.43608177 0.91969955 prediction 0.633076288017361 Functional Gain - CNIH3 ENSG00000143786 CDS Human protein_coding chr1:224922312 chr1:224922315 nonsynonymous SNV 0.441 1 24 hm5C_associated_SNPs_100908 0 0 0 0 2 CNIH3 chr1:224922265 3'AG 224922265 Downstream 51bp
chr1 224922315 224922315 1 + T G SKCM 224922312 + 224922292 224922332 41 AGAACTAGCCTACGACCCACCGGTGGTCATGAATGCCGACA AGAACTAGCCTACGACCCACCGGGGGTCATGAATGCCGACA < 41bp 0.562845084583973 0.879383228592653 0.43608177 0.91969955 prediction 0.633076288017361 Functional Gain - CNIH3 ENSG00000143786 CDS Human protein_coding chr1:224922312 chr1:224922315 nonsynonymous SNV 0.441 1 24 hm5C_associated_SNPs_100908 0 0 0 0 2 CNIH3 chr1:224922408 5'GT 224922408 Upstream 94bp
chr20 43348580 43348580 1 + C A ACC 43348576 + 43348556 43348596 41 CCGACACCATGTACCTGCCCCTGGCCACCTCCCCGATGCCC CCGACACCATGTACCTGCCCCTGGACACCTCCCCGATGCCC < 41bp 0.438943298423019 0.816503331240447 0.26546207 0.3948356 prediction 0.633006662480894 Functional Gain - WISP2 ENSG00000064205 CDS Human protein_coding chr20:43348576 chr20:43348580 nonsynonymous SNV 0.257 0 25 hm5C_associated_SNPs_100910 0 0 0 0 1 WISP2 chr20:43348538 3'AG 43348538 Downstream 43bp
chr1 109742777 109742777 1 + C A LUSC 109742773 + 109742753 109742793 41 ATCTGCAAAACCATAGATTTCTGGCTGAAAGTGGGCATCTC ATCTGCAAAACCATAGATTTCTGGATGAAAGTGGGCATCTC < 41bp 0.571728052629234 0.888189468235238 0.5803035 0.80870986 prediction 0.632922831212009 Functional Gain - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109742773 chr1:109742777 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_100913 0 0 0 0 1 KIAA1324 chr1:109742681 3'AG 109742681 Downstream 97bp
chr19 49514510 49514510 1 + C A GBM 49514506 + 49514486 49514526 41 AGAGCTTCTCCTTCCTCAACCGGGCCCTGGAGAGTGACATG AGAGCTTCTCCTTCCTCAACCGGGACCTGGAGAGTGACATG < 41bp 0.570274638006522 0.886719023917422 0.6802521 0.8934487 prediction 0.6328887718218 Functional Gain - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49514506 chr19:49514510 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_100914 0 0 1 0 2 RUVBL2 chr19:49514449 3'AG 49514449 Downstream 62bp
chr19 49514510 49514510 1 + C A GBM 49514506 + 49514486 49514526 41 AGAGCTTCTCCTTCCTCAACCGGGCCCTGGAGAGTGACATG AGAGCTTCTCCTTCCTCAACCGGGACCTGGAGAGTGACATG < 41bp 0.570274638006522 0.886719023917422 0.6802521 0.8934487 prediction 0.6328887718218 Functional Gain - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49514506 chr19:49514510 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_100914 0 0 1 0 2 RUVBL2 chr19:49514567 5'GT 49514567 Upstream 58bp
chr1 160319417 160319417 1 + C A STAD 160319413 + 160319393 160319433 41 GTCCTTGACCAAGCCCAGTCCTGCCTCAGGCTTCTCTCCTA GTCCTTGACCAAGCCCAGTCCTGCATCAGGCTTCTCTCCTA < 41bp 0.587687682568292 0.904087357162712 0.037400246 0.19847965 prediction 0.63279934918884 Functional Gain - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160319413 chr1:160319417 synonymous SNV . 0 25 hm5C_associated_SNPs_100916 0 0 1 1 1 NCSTN chr1:160319339 3'AG 160319339 Downstream 79bp
chr2 10045025 10045025 1 + T G rs553591595 10045022 + 10045002 10045042 41 CGAGGACATCTACAAAAAAACAGTAGAAGTTGGAACATTTT CGAGGACATCTACAAAAAAACAGGAGAAGTTGGAACATTTT < 41bp 0.475505239053896 0.816395045784192 0.51847446 0.80173266 prediction 0.632790091568383 Functional Gain - TAF1B ENSG00000115750 CDS Human protein_coding chr2:10045022 chr2:10045025 nonsynonymous SNV 0.907 0 24 hm5C_associated_SNPs_100917 0 0 0 0 1 TAF1B chr2:10044988 3'AG 10044988 Downstream 38bp
chr1 207072725 207072725 1 + C A HNSC 207072721 + 207072701 207072741 41 AATGCAGATGGTTGTGCTCCCTTGCCTGGGTTTTACCCTGC AATGCAGATGGTTGTGCTCCCTTGACTGGGTTTTACCCTGC < 41bp 0.450276838043447 0.816352454966318 0.022147745 0.08865264 prediction 0.632704909932636 Functional Gain - IL24 ENSG00000162892 CDS Human protein_coding chr1:207072721 chr1:207072725 stopgain 0.004 0 25 hm5C_associated_SNPs_100919 0 0 0 0 2 IL24 chr1:207072662 3'AG 207072662 Downstream 64bp
chr1 207072725 207072725 1 + C A HNSC 207072721 + 207072701 207072741 41 AATGCAGATGGTTGTGCTCCCTTGCCTGGGTTTTACCCTGC AATGCAGATGGTTGTGCTCCCTTGACTGGGTTTTACCCTGC < 41bp 0.450276838043447 0.816352454966318 0.022147745 0.08865264 prediction 0.632704909932636 Functional Gain - IL24 ENSG00000162892 CDS Human protein_coding chr1:207072721 chr1:207072725 stopgain 0.004 0 25 hm5C_associated_SNPs_100919 0 0 0 0 2 IL24 chr1:207072665 3'AG 207072665 Downstream 61bp
chr1 3688053 3688053 1 + T G rs79789173 3688051 + 3688031 3688071 41 CTGCAACAGTCAGAGGCCTTCCTGACCAGCAAATCCAAGAA CTGCAACAGTCAGAGGCCTTCCGGACCAGCAAATCCAAGAA < 41bp 0.50338705587723 0.819723140340887 0.20424351 0.44764954 prediction 0.632672168927314 Functional Gain - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3688051 chr1:3688053 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_100920 0 0 0 0 1 CCDC27 chr1:3687965 3'AG 3687965 Downstream 89bp
chrX 152770102 152770102 1 + T G LUAD 152770099 + 152770079 152770119 41 GTCCATCCGCCATGTGGCCCCTGTGGCGCCTCGTGTCTCTG GTCCATCCGCCATGTGGCCCCTGGGGCGCCTCGTGTCTCTG < 41bp 0.563269806562057 0.879571309786911 0.05191052 0.8622813 prediction 0.632603006449709 Functional Gain - BGN ENSG00000182492 CDS Human protein_coding chrX:152770099 chrX:152770102 nonsynonymous SNV 0.135 1 24 hm5C_associated_SNPs_100923 0 0 0 0 1 BGN chrX:152770079 3'AG 152770079 Downstream 24bp
chr1 12175698 12175698 1 + C A LUAD 12175694 + 12175674 12175714 41 CCGCACCTGCGAATGTCGACCTGGCATGATCTGTGCCACAT CCGCACCTGCGAATGTCGACCTGGAATGATCTGTGCCACAT < 41bp 0.5755574619453 0.891857692155285 0.2012515 0.28721392 prediction 0.632600460419971 Functional Gain - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12175694 chr1:12175698 synonymous SNV . 0 25 hm5C_associated_SNPs_100924 0 0 0 0 1 TNFRSF8 chr1:12175634 3'AG 12175634 Downstream 65bp
chr15 41865552 41865552 1 + C A THCA 41865548 + 41865528 41865568 41 TGTGTGGCTGACTTCGGACTCTCCCGGAAGATCTACAGTGG TGTGTGGCTGACTTCGGACTCTCCAGGAAGATCTACAGTGG < 41bp 0.404101532497692 0.816292360200797 0.12640265 0.91236997 prediction 0.632584720401594 Functional Gain - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41865548 chr15:41865552 synonymous SNV . 0 25 hm5C_associated_SNPs_100925 0 0 1 0 1 TYRO3 chr15:41865506 3'AG 41865506 Downstream 47bp
chr16 84225156 84225156 1 + C A rs149894736 84225152 + 84225132 84225172 41 TGCCCCCAGCAGGGCTCAGCCTGCCGCTCAAAGACCCACCT TGCCCCCAGCAGGGCTCAGCCTGCAGCTCAAAGACCCACCT < 41bp 0.56964006927552 0.885925872912208 0.22989792 0.3853041 prediction 0.632571607273376 Functional Gain - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84225152 chr16:84225156 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_100927 0 0 0 0 1 ADAD2 chr16:84225254 5'GT 84225254 Upstream 99bp
chr17 56320396 56320396 1 + C A UCEC 56320392 + 56320372 56320412 41 TGGCTTCCCTCATCTTGCTTCAGGCTGCAGCATCTACCACA TGGCTTCCCTCATCTTGCTTCAGGATGCAGCATCTACCACA < 41bp 0.445351284360104 0.816235863260492 0.34607244 0.41193852 prediction 0.632471726520983 Functional Gain - LPO ENSG00000167419 CDS Human protein_coding chr17:56320392 chr17:56320396 nonsynonymous SNV 0.304 0 25 hm5C_associated_SNPs_100931 0 0 0 0 2 LPO chr17:56320339 3'AG 56320339 Downstream 58bp
chr17 56320396 56320396 1 + C A UCEC 56320392 + 56320372 56320412 41 TGGCTTCCCTCATCTTGCTTCAGGCTGCAGCATCTACCACA TGGCTTCCCTCATCTTGCTTCAGGATGCAGCATCTACCACA < 41bp 0.445351284360104 0.816235863260492 0.34607244 0.41193852 prediction 0.632471726520983 Functional Gain - LPO ENSG00000167419 CDS Human protein_coding chr17:56320392 chr17:56320396 nonsynonymous SNV 0.304 0 25 hm5C_associated_SNPs_100931 0 0 0 0 2 LPO chr17:56320416 5'GT 56320416 Upstream 21bp
chr1 160098487 160098487 1 + C A LUAD 160098483 + 160098463 160098503 41 AAGCGCATGGCACGGAAGAACTGCCTGGTGAAGAACCTGGA AAGCGCATGGCACGGAAGAACTGCATGGTGAAGAACCTGGA < 41bp 0.411640534197311 0.816202316796587 0.29797393 0.31926742 prediction 0.632404633593173 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160098483 chr1:160098487 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_100932 0 0 0 0 1 ATP1A2 chr1:160098442 3'AG 160098442 Downstream 46bp
chr5 137206430 137206430 1 + C A OV 137206426 + 137206406 137206446 41 GCCTCCTGGACCAGAAACCTCCAGCTTCTCTAGCCAGACCA GCCTCCTGGACCAGAAACCTCCAGATTCTCTAGCCAGACCA < 41bp 0.433395497744547 0.81617595650729 0.328337 0.71914405 prediction 0.63235191301458 Functional Gain - MYOT ENSG00000120729 CDS Human antisense chr5:137206426 chr5:137206430 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_100933 0 0 0 0 1 MYOT chr5:137206340 3'AG 137206340 Downstream 91bp
chr13 100637592 100637592 1 + C A STAD 100637588 + 100637568 100637608 41 GTCTTGCAGGTCCATGAGTCCTCCCCGCAGGGCTCTGAATC GTCTTGCAGGTCCATGAGTCCTCCACGCAGGGCTCTGAATC < 41bp 0.429947135791581 0.816117103022189 0.21547368 0.92239845 prediction 0.632234206044379 Functional Gain - ZIC2 ENSG00000043355 CDS Human protein_coding chr13:100637588 chr13:100637592 nonsynonymous SNV 0.724 2 25 hm5C_associated_SNPs_100936 0 0 0 0 1 ZIC2 chr13:100637577 3'AG 100637577 Downstream 16bp
chr3 160970600 160970600 1 + T G UCEC 160970597 + 160970577 160970617 41 GCTGATTTAGAGTCAGAAGTCACTGAGGGGCCAAGTGTGGT GCTGATTTAGAGTCAGAAGTCACGGAGGGGCCAAGTGTGGT < 41bp 0.478145531000011 0.816069292834788 0.07052067 0.18410176 prediction 0.632138585669577 Functional Gain - NMD3 ENSG00000169251 CDS Human protein_coding chr3:160970597 chr3:160970600 synonymous SNV . 0 24 hm5C_associated_SNPs_100938 0 0 1 0 1 NMD3 chr3:160970557 3'AG 160970557 Downstream 44bp
chr2 120388402 120388402 1 + C A LUAD 120388398 + 120388378 120388418 41 GGACTCCACAACTCAGCTCTCTGGCAAAACATCAGTCTTGA GGACTCCACAACTCAGCTCTCTGGAAAAACATCAGTCTTGA < 41bp 0.574577407162187 0.890631220751417 0.077656955 0.10214296 prediction 0.63210762717846 Functional Gain - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120388398 chr2:120388402 synonymous SNV . 0 25 hm5C_associated_SNPs_100939 0 0 0 0 2 CFAP221 chr2:120388343 3'AG 120388343 Downstream 60bp
chr2 120388402 120388402 1 + C A LUAD 120388398 + 120388378 120388418 41 GGACTCCACAACTCAGCTCTCTGGCAAAACATCAGTCTTGA GGACTCCACAACTCAGCTCTCTGGAAAAACATCAGTCTTGA < 41bp 0.574577407162187 0.890631220751417 0.077656955 0.10214296 prediction 0.63210762717846 Functional Gain - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120388398 chr2:120388402 synonymous SNV . 0 25 hm5C_associated_SNPs_100939 0 0 0 0 2 CFAP221 chr2:120388477 5'GT 120388477 Upstream 76bp
chrX 37664352 37664352 1 + C A UCEC 37664348 + 37664328 37664368 41 GGGAGCAGGGATTGGGGTCACACCCTTCGCATCCATTCTCA GGGAGCAGGGATTGGGGTCACACCATTCGCATCCATTCTCA < 41bp 0.578249308028868 0.894284858957816 0.009804159 0.1796749 prediction 0.632071101857896 Functional Gain - CYBB ENSG00000165168 CDS Human protein_coding chrX:37664348 chrX:37664352 synonymous SNV . 0 25 hm5C_associated_SNPs_100941 0 0 0 0 2 CYBB chrX:37664259 3'AG 37664259 Downstream 94bp
chrX 37664352 37664352 1 + C A UCEC 37664348 + 37664328 37664368 41 GGGAGCAGGGATTGGGGTCACACCCTTCGCATCCATTCTCA GGGAGCAGGGATTGGGGTCACACCATTCGCATCCATTCTCA < 41bp 0.578249308028868 0.894284858957816 0.009804159 0.1796749 prediction 0.632071101857896 Functional Gain - CYBB ENSG00000165168 CDS Human protein_coding chrX:37664348 chrX:37664352 synonymous SNV . 0 25 hm5C_associated_SNPs_100941 0 0 0 0 2 CYBB chrX:37664421 5'GT 37664421 Upstream 70bp
chr16 57785893 57785893 1 + T G SKCM 57785890 + 57785870 57785910 41 GGCAAGATGATGTCTGAGTTCCCTGGTCACACGGGGCCTGT GGCAAGATGATGTCTGAGTTCCCGGGTCACACGGGGCCTGT < 41bp 0.441298516071455 0.815854617346986 0.17492929 0.7331174 prediction 0.631709234693971 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57785890 chr16:57785893 synonymous SNV . 0 24 hm5C_associated_SNPs_100949 0 0 1 0 2 KATNB1 chr16:57785852 3'AG 57785852 Downstream 42bp
chr16 57785893 57785893 1 + T G SKCM 57785890 + 57785870 57785910 41 GGCAAGATGATGTCTGAGTTCCCTGGTCACACGGGGCCTGT GGCAAGATGATGTCTGAGTTCCCGGGTCACACGGGGCCTGT < 41bp 0.441298516071455 0.815854617346986 0.17492929 0.7331174 prediction 0.631709234693971 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57785890 chr16:57785893 synonymous SNV . 0 24 hm5C_associated_SNPs_100949 0 0 1 0 2 KATNB1 chr16:57785967 5'GT 57785967 Upstream 75bp
chr9 123917154 123917154 1 + C A KIRC 123917150 + 123917130 123917170 41 TCAGGGAAGCTGACCGACTCCTGGCAGAGGCTGAGAGTGAA TCAGGGAAGCTGACCGACTCCTGGAAGAGGCTGAGAGTGAA < 41bp 0.427032173997913 0.815854134708974 0.1045647 0.2401562 prediction 0.631708269417949 Functional Gain - CNTRL ENSG00000119397 CDS Human protein_coding chr9:123917150 chr9:123917154 nonsynonymous SNV 0.896 0 25 hm5C_associated_SNPs_100950 0 0 1 0 1 CNTRL chr9:123917191 5'GT 123917191 Upstream 38bp
chr3 129023491 129023491 1 + C A rs147986626 129023487 + 129023467 129023507 41 GCAGTGGTTGGCCACAAAGTCACCCAAAAAGGAAGACTCAA GCAGTGGTTGGCCACAAAGTCACCAAAAAAGGAAGACTCAA < 41bp 0.41656266080977 0.815849303447277 0.17583025 0.16200843 prediction 0.631698606894554 Functional Gain - HMCES ENSG00000183624 CDS Human protein_coding chr3:129023487 chr3:129023491 synonymous SNV . 0 25 hm5C_associated_SNPs_100952 0 0 1 0 1 HMCES chr3:129023432 3'AG 129023432 Downstream 60bp
chr16 25175987 25175987 1 + T A HNSC 25175983 + 25175963 25176003 41 CTCCAGAGCAGTCCGCAAACCTCCTGAAGTGGGCAGCCAAC CTCCAGAGCAGTCCGCAAACCTCCAGAAGTGGGCAGCCAAC < 41bp 0.522495700597069 0.838329917531284 0.31739414 0.9574645 prediction 0.63166843386843 Functional Gain - LCMT1 ENSG00000205629 CDS Human protein_coding chr16:25175983 chr16:25175987 nonsynonymous SNV 0.925 3 25 hm5C_associated_SNPs_100954 0 0 0 0 2 LCMT1 chr16:25175919 3'AG 25175919 Downstream 69bp
chr16 25175987 25175987 1 + T A HNSC 25175983 + 25175963 25176003 41 CTCCAGAGCAGTCCGCAAACCTCCTGAAGTGGGCAGCCAAC CTCCAGAGCAGTCCGCAAACCTCCAGAAGTGGGCAGCCAAC < 41bp 0.522495700597069 0.838329917531284 0.31739414 0.9574645 prediction 0.63166843386843 Functional Gain - LCMT1 ENSG00000205629 CDS Human protein_coding chr16:25175983 chr16:25175987 nonsynonymous SNV 0.925 3 25 hm5C_associated_SNPs_100954 0 0 0 0 2 LCMT1 chr16:25176039 5'GT 25176039 Upstream 53bp
chr22 42289163 42289163 1 + C A KIRP 42289159 + 42289139 42289179 41 GCCCAGAGCCTGTGTGGCCCCGAGCACAGTGCTGTTCCTGA GCCCAGAGCCTGTGTGGCCCCGAGAACAGTGCTGTTCCTGA < 41bp 0.560522910725076 0.876268021190049 0.16087115 0.31902295 prediction 0.631490220929946 Functional Gain - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42289159 chr22:42289163 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_100956 0 0 1 1 1 SREBF2 chr22:42289121 3'AG 42289121 Downstream 43bp
chrX 117788733 117788733 1 + C A UCEC 117788729 + 117788709 117788749 41 ACCCCAGAGCTCAGGAAAACCTGGCTTGATAGCATGGCCAA ACCCCAGAGCTCAGGAAAACCTGGATTGATAGCATGGCCAA < 41bp 0.562314592450663 0.87789753086841 0.24960276 0.7422522 prediction 0.631165876835494 Functional Gain - DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117788729 chrX:117788733 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_100962 0 0 0 0 1 DOCK11 chrX:117788780 5'GT 117788780 Upstream 48bp
chr17 72764334 72764334 1 + C A LUSC 72764330 + 72764310 72764350 41 GAGGCAGCCTTGGAGAGCCCCAGGCCAGCCCTGGTGAGATC GAGGCAGCCTTGGAGAGCCCCAGGACAGCCCTGGTGAGATC < 41bp 0.5679821611963 0.883547347433142 0.86674774 0.8953369 prediction 0.631130372473684 Functional Gain - SLC9A3R1 ENSG00000109062 CDS Human protein_coding chr17:72764330 chr17:72764334 nonsynonymous SNV 0.891 0 25 hm5C_associated_SNPs_100964 0 0 1 0 2 SLC9A3R1 chr17:72764286 3'AG 72764286 Downstream 49bp
chr17 72764334 72764334 1 + C A LUSC 72764330 + 72764310 72764350 41 GAGGCAGCCTTGGAGAGCCCCAGGCCAGCCCTGGTGAGATC GAGGCAGCCTTGGAGAGCCCCAGGACAGCCCTGGTGAGATC < 41bp 0.5679821611963 0.883547347433142 0.86674774 0.8953369 prediction 0.631130372473684 Functional Gain - SLC9A3R1 ENSG00000109062 CDS Human protein_coding chr17:72764330 chr17:72764334 nonsynonymous SNV 0.891 0 25 hm5C_associated_SNPs_100964 0 0 1 0 2 SLC9A3R1 chr17:72764375 5'GT 72764375 Upstream 42bp
chr19 56163822 56163822 1 + C A STAD 56163818 + 56163798 56163838 41 AAGGACGCCGACGGGGTCCTCTGCCGGTACAAGAAGATCCT AAGGACGCCGACGGGGTCCTCTGCAGGTACAAGAAGATCCT < 41bp 0.568217933313299 0.88375363251927 0.18804836 0.39168823 prediction 0.631071398411942 Functional Gain - CCDC106 ENSG00000173581 CDS Human protein_coding chr19:56163818 chr19:56163822 synonymous SNV . 0 25 hm5C_associated_SNPs_100969 0 0 1 0 1 CCDC106 chr19:56163796 3'AG 56163796 Downstream 27bp
chr4 85525505 85525505 1 + T G KIRC 85525502 + 85525482 85525522 41 CCCTGAGATTCTCAAAAAAGCTCTATCTGGTTTATCTTCAA CCCTGAGATTCTCAAAAAAGCTCGATCTGGTTTATCTTCAA < 41bp 0.471405901632078 0.815445566586327 0.8546585 0.22060713 prediction 0.630891133172654 Functional Gain - CDS1 ENSG00000163624 CDS Human protein_coding chr4:85525502 chr4:85525505 nonsynonymous SNV 0.981 4 24 hm5C_associated_SNPs_100973 0 0 1 0 1 CDS1 chr4:85525523 5'GT 85525523 Upstream 19bp
chr19 58131588 58131588 1 + T G rs199570382 58131585 + 58131565 58131605 41 TGAACAGAGCATTTCTATAGCAGTGTCACATGTTAATACTT TGAACAGAGCATTTCTATAGCAGGGTCACATGTTAATACTT < 41bp 0.448538404032324 0.815423968921474 0.29600364 0.922987 prediction 0.630847937842948 Functional Gain - ZNF134 ENSG00000213762 CDS Human protein_coding chr19:58131585 chr19:58131588 nonsynonymous SNV 0.845 1 24 hm5C_associated_SNPs_100974 0 0 1 0 1 ZNF134 chr19:58131528 3'AG 58131528 Downstream 61bp
chr2 27303099 27303099 1 + C A LUSC 27303095 + 27303075 27303115 41 TGGAGACATATGTCAAGTACCAGCCTTGTGCCTGGGGCCAG TGGAGACATATGTCAAGTACCAGCATTGTGCCTGGGGCCAG < 41bp 0.425985177200107 0.815385012186358 0.45643532 0.3552704 prediction 0.630770024372716 Functional Gain - EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27303095 chr2:27303099 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_100977 0 0 0 0 2 EMILIN1 chr2:27303019 3'AG 27303019 Downstream 81bp
chr2 27303099 27303099 1 + C A LUSC 27303095 + 27303075 27303115 41 TGGAGACATATGTCAAGTACCAGCCTTGTGCCTGGGGCCAG TGGAGACATATGTCAAGTACCAGCATTGTGCCTGGGGCCAG < 41bp 0.425985177200107 0.815385012186358 0.45643532 0.3552704 prediction 0.630770024372716 Functional Gain - EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27303095 chr2:27303099 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_100977 0 0 0 0 2 EMILIN1 chr2:27303138 5'GT 27303138 Upstream 40bp
chr22 24121481 24121481 1 + C A ACC 24121477 + 24121457 24121497 41 CACGCAGGAAGCCCCCCGGCCTGCCAGCAGCCTCAGGCCTC CACGCAGGAAGCCCCCCGGCCTGCAAGCAGCCTCAGGCCTC < 41bp 0.431262888548879 0.815339425726594 0.14747474 0.24722627 prediction 0.630678851453189 Functional Gain - MMP11 ENSG00000099953 CDS Human protein_coding chr22:24121477 chr22:24121481 synonymous SNV . 0 25 hm5C_associated_SNPs_100980 0 0 1 0 1 MMP11 chr22:24121555 5'GT 24121555 Upstream 75bp
chr4 158057679 158057679 1 + C A UCEC 158057675 + 158057655 158057695 41 GGAATGACCCCAGGCTGAAGCTCCCCAGTGATTTTAGGGGT GGAATGACCCCAGGCTGAAGCTCCACAGTGATTTTAGGGGT < 41bp 0.404096457640285 0.81531638380013 0.06803435 0.5398718 prediction 0.630632767600261 Functional Gain - GLRB ENSG00000109738 CDS Human protein_coding chr4:158057675 chr4:158057679 nonsynonymous SNV 0.987 3 25 hm5C_associated_SNPs_100982 0 0 1 0 1 GLRB chr4:158057621 3'AG 158057621 Downstream 59bp
chr19 46174549 46174549 1 + C A CESC 46174545 + 46174525 46174565 41 CCCCGTGCCCACCCCCAGGCCTCGCCTGTAACGGGTCCTTC CCCCGTGCCCACCCCCAGGCCTCGACTGTAACGGGTCCTTC < 41bp 0.419730475020291 0.815296486699272 0.045523793 0.11775473 prediction 0.630592973398544 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46174545 chr19:46174549 nonsynonymous SNV 0.925 0 25 hm5C_associated_SNPs_100984 0 0 1 0 1 GIPR chr19:46174543 3'AG 46174543 Downstream 7bp
chr16 31422152 31422152 1 + C A SKCM 31422148 + 31422128 31422168 41 ACCGGGAAGGCTGTCATCTTCACCCAGGTGTCCAGGCAATG ACCGGGAAGGCTGTCATCTTCACCAAGGTGTCCAGGCAATG < 41bp 0.401401199646994 0.815227624033674 0.031285644 0.040764123 prediction 0.630455248067348 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422148 chr16:31422152 nonsynonymous SNV 0.422 0 25 hm5C_associated_SNPs_100987 0 0 0 0 2 ITGAD chr16:31422057 3'AG 31422057 Downstream 96bp
chr16 31422152 31422152 1 + C A SKCM 31422148 + 31422128 31422168 41 ACCGGGAAGGCTGTCATCTTCACCCAGGTGTCCAGGCAATG ACCGGGAAGGCTGTCATCTTCACCAAGGTGTCCAGGCAATG < 41bp 0.401401199646994 0.815227624033674 0.031285644 0.040764123 prediction 0.630455248067348 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422148 chr16:31422152 nonsynonymous SNV 0.422 0 25 hm5C_associated_SNPs_100987 0 0 0 0 2 ITGAD chr16:31422199 5'GT 31422199 Upstream 48bp
chr20 58342339 58342339 1 + C A LUAD 58342335 + 58342315 58342355 41 CAAGCCTTAGCTGGGGCTGACTCCCTGGACAGTCCTCCCAG CAAGCCTTAGCTGGGGCTGACTCCATGGACAGTCCTCCCAG < 41bp 0.403590046853521 0.81519084148805 0.08422828 0.9762695 prediction 0.630381682976099 Functional Gain - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58342335 chr20:58342339 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_100989 0 0 0 0 1 PHACTR3 chr20:58342241 3'AG 58342241 Downstream 99bp
chr5 52778849 52778849 1 + C A UCEC 52778845 + 52778825 52778865 41 GGAGGACGTGAATGACAACACACTCTTCAAGTGGATGATTT GGAGGACGTGAATGACAACACACTATTCAAGTGGATGATTT < 41bp 0.4342717358289 0.815190040583311 0.104762286 0.653031 prediction 0.630380081166623 Functional Gain - FST ENSG00000134363 CDS Human protein_coding chr5:52778845 chr5:52778849 synonymous SNV . 0 25 hm5C_associated_SNPs_100990 0 0 0 0 1 FST chr5:52778901 5'GT 52778901 Upstream 53bp
chr17 7534931 7534931 1 + C A rs145273466 7534927 + 7534907 7534947 41 CTGGTTCCTGCCCTGGATGGCTGCCTGCGCCGGGATTCCTG CTGGTTCCTGCCCTGGATGGCTGCATGCGCCGGGATTCCTG < 41bp 0.520582863745395 0.835738154395039 0.25083345 0.85225236 prediction 0.630310581299287 Functional Gain - SHBG ENSG00000129214 CDS Human protein_coding chr17:7534927 chr17:7534931 nonsynonymous SNV 0.056 2 25 hm5C_associated_SNPs_100992 0 0 1 0 1 SHBG chr17:7534907 3'AG 7534907 Downstream 25bp
chr11 61897294 61897294 1 + C A SKCM 61897290 + 61897270 61897310 41 TCTCGGAGCAGCCAGCTGAGCTCCCGACGCCTCCGCAGCAA TCTCGGAGCAGCCAGCTGAGCTCCAGACGCCTCCGCAGCAA < 41bp 0.587750889927077 0.90290387274542 0.102214366 0.8547032 prediction 0.630305965636686 Functional Gain - INCENP ENSG00000149503 CDS Human protein_coding chr11:61897290 chr11:61897294 synonymous SNV . 0 25 hm5C_associated_SNPs_100993 0 0 1 0 1 INCENP chr11:61897254 3'AG 61897254 Downstream 41bp
chr4 70160277 70160277 1 + T G rs6843900 70160274 + 70160254 70160294 41 AGAGAATGTTATGAAATTATCAATAATTCAACATGATCAAC AGAGAATGTTATGAAATTATCAAGAATTCAACATGATCAAC < 41bp 0.475596677383598 0.815137796683615 0.053199828 0.16101745 prediction 0.63027559336723 Functional Gain - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70160274 chr4:70160277 nonsynonymous SNV 0.110 0 24 hm5C_associated_SNPs_100994 0 0 0 3 1 UGT2B28 chr4:70160248 3'AG 70160248 Downstream 30bp
chr16 84793532 84793532 1 + T G HNSC 84793529 + 84793509 84793549 41 GAATGAGTTCACTAATATGCCAGTACCTCCAAAACCCCGAC GAATGAGTTCACTAATATGCCAGGACCTCCAAAACCCCGAC < 41bp 0.453352955893042 0.815076797766449 0.03394392 0.023756087 prediction 0.630153595532898 Functional Gain - USP10 ENSG00000103194 CDS Human protein_coding chr16:84793529 chr16:84793532 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_100996 0 0 1 0 1 USP10 chr16:84793552 5'GT 84793552 Upstream 21bp
chr14 102348593 102348593 1 + C A UCEC 102348589 + 102348569 102348609 41 AGATGAACCAACGTTAGAAGCAGCCTGGCCTCATCTACAGG AGATGAACCAACGTTAGAAGCAGCATGGCCTCATCTACAGG < 41bp 0.423085248970447 0.814972836801543 0.1636926 0.20161557 prediction 0.629945673603086 Functional Gain - PPP2R5C ENSG00000078304 CDS Human protein_coding chr14:102348589 chr14:102348593 synonymous SNV . 0 25 hm5C_associated_SNPs_101003 0 0 1 0 1 PPP2R5C chr14:102348608 5'GT 102348608 Upstream 16bp
chr3 112968705 112968705 1 + C A COAD 112968701 + 112968681 112968721 41 GAATGAGGCCTGAGGTCACACTGGCTTGCCTCCTCCTAGCC GAATGAGGCCTGAGGTCACACTGGATTGCCTCCTCCTAGCC < 41bp 0.558879404659467 0.873849401291123 0.3395967 0.43536383 prediction 0.629939993263312 Functional Gain - BOC ENSG00000144857 CDS Human protein_coding chr3:112968701 chr3:112968705 nonsynonymous SNV 0.200 1 25 hm5C_associated_SNPs_101004 0 0 1 0 1 BOC chr3:112968746 5'GT 112968746 Upstream 42bp
chr7 5338630 5338630 1 + C A rs73673108 5338626 + 5338606 5338646 41 ATCCTCCCTCCAGGAGCACCCAGCCCCGGCCCTGGCCCCCA ATCCTCCCTCCAGGAGCACCCAGCACCGGCCCTGGCCCCCA < 41bp 0.569593821739019 0.884509957713313 0.03990689 0.08468425 prediction 0.629832271948588 Functional Gain - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5338626 chr7:5338630 synonymous SNV . 0 25 hm5C_associated_SNPs_101006 0 0 0 0 1 SLC29A4 chr7:5338619 3'AG 5338619 Downstream 12bp
chr17 48674158 48674158 1 + C A THCA 48674154 + 48674134 48674174 41 GCCGCCTCTCATCATCCACACGGCCGCCACACCCATGTCGC GCCGCCTCTCATCATCCACACGGCAGCCACACCCATGTCGC < 41bp 0.495903822923217 0.814913364457213 0.03523907 0.15752634 prediction 0.629826728914426 Functional Gain - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48674154 chr17:48674158 synonymous SNV . 0 25 hm5C_associated_SNPs_101008 0 0 0 0 1 CACNA1G chr17:48674091 3'AG 48674091 Downstream 68bp
chr9 96416722 96416722 1 + C A STAD 96416718 + 96416698 96416738 41 GAGAAGACCTTCTATCTCATCAGGCCGGCCTCGGCCAACAT GAGAAGACCTTCTATCTCATCAGGACGGCCTCGGCCAACAT < 41bp 0.572566755310057 0.887471199383985 0.9046664 0.9045786 prediction 0.629808888147855 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96416718 chr9:96416722 nonsynonymous SNV 0.804 4 25 hm5C_associated_SNPs_101009 0 0 1 0 1 PHF2 chr9:96416695 3'AG 96416695 Downstream 28bp
chr17 30687743 30687743 1 + C A KIRP 30687739 + 30687719 30687759 41 GTTATATTCCTCCAATGGCACAGCCAGGACTGCCACCAGTA GTTATATTCCTCCAATGGCACAGCAAGGACTGCCACCAGTA < 41bp 0.421875136481846 0.814780120734819 0.20307425 0.7254161 prediction 0.629560241469638 Functional Gain - ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30687739 chr17:30687743 nonsynonymous SNV 0.990 1 25 hm5C_associated_SNPs_101015 0 0 1 0 1 ZNF207 chr17:30687784 5'GT 30687784 Upstream 42bp
chrY 22930744 22930744 1 + C A LGG 22930740 + 22930720 22930760 41 TGTGGGGACAAAGGGAATTCCACACCTGGTGACTCATGATG TGTGGGGACAAAGGGAATTCCACAACTGGTGACTCATGATG < 41bp 0.411873682714084 0.814712279459071 0.19215965 0.23125139 prediction 0.629424558918142 Functional Gain - RPS4Y2 ENSG00000157828 CDS Human other chrY:22930740 chrY:22930744 nonsynonymous SNV 0.014 0 25 hm5C_associated_SNPs_101017 0 0 0 0 1 RPS4Y2 chrY:22930691 3'AG 22930691 Downstream 54bp
chr20 31606541 31606541 1 + C A ESCA 31606537 + 31606517 31606557 41 GGGTACCGAGGGCTCCATGGCCACCGTGGGCCTCTCCCAGC GGGTACCGAGGGCTCCATGGCCACAGTGGGCCTCTCCCAGC < 41bp 0.424063647107222 0.814597525325779 0.33042598 0.51320183 prediction 0.629195050651558 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31606537 chr20:31606541 synonymous SNV . 0 25 hm5C_associated_SNPs_101020 0 0 1 0 2 BPIFB2 chr20:31606443 3'AG 31606443 Downstream 99bp
chr20 31606541 31606541 1 + C A ESCA 31606537 + 31606517 31606557 41 GGGTACCGAGGGCTCCATGGCCACCGTGGGCCTCTCCCAGC GGGTACCGAGGGCTCCATGGCCACAGTGGGCCTCTCCCAGC < 41bp 0.424063647107222 0.814597525325779 0.33042598 0.51320183 prediction 0.629195050651558 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31606537 chr20:31606541 synonymous SNV . 0 25 hm5C_associated_SNPs_101020 0 0 1 0 2 BPIFB2 chr20:31606628 5'GT 31606628 Upstream 88bp
chr1 70503868 70503868 1 + C A LUAD 70503864 + 70503844 70503884 41 CCAGCGGGAGGCTGTTCCCCCAGGCAATATACCACAGCGTC CCAGCGGGAGGCTGTTCCCCCAGGAAATATACCACAGCGTC < 41bp 0.461197386594316 0.814535478672475 0.8691267 0.90223944 prediction 0.629070957344951 Functional Gain - LRRC7 ENSG00000033122 CDS Human protein_coding chr1:70503864 chr1:70503868 synonymous SNV . 0 25 hm5C_associated_SNPs_101021 0 0 0 0 1 LRRC7 chr1:70503796 3'AG 70503796 Downstream 73bp
chr9 82323614 82323614 1 + C A UCEC 82323610 + 82323590 82323630 41 AGAGCTGACCAGCCCCGGAGCGGCCTACGCTGGGCTCCACA AGAGCTGACCAGCCCCGGAGCGGCATACGCTGGGCTCCACA < 41bp 0.418727769190314 0.814486083793883 0.5757754 0.7181605 prediction 0.628972167587765 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82323610 chr9:82323614 synonymous SNV . 0 25 hm5C_associated_SNPs_101023 0 0 0 0 1 TLE4 chr9:82323701 5'GT 82323701 Upstream 88bp
chr2 233322545 233322545 1 + C A LUSC 233322541 + 233322521 233322561 41 GGAACCGCACTGAGCTCATGCAGGCGTCCCTGGACCAGTCT GGAACCGCACTGAGCTCATGCAGGAGTCCCTGGACCAGTCT < 41bp 0.566657699787928 0.881022309483086 0.8819086 0.885372 prediction 0.628729219390317 Functional Gain - ALPI ENSG00000163295 CDS Human protein_coding chr2:233322541 chr2:233322545 nonsynonymous SNV 0.005 2 25 hm5C_associated_SNPs_101030 0 0 0 0 1 ALPI chr2:233322577 5'GT 233322577 Upstream 33bp
chr12 1943505 1943505 1 + T G GBM 1943503 + 1943483 1943523 41 AAGGACATGCGGATGGTCCCCATGGAGATGTTCAACTACTG AAGGACATGCGGATGGTCCCCAGGGAGATGTTCAACTACTG < 41bp 0.49095204329445 0.814322926856874 0.26419187 0.90424806 prediction 0.628645853713748 Functional Gain - LRTM2 ENSG00000166159 CDS Human protein_coding chr12:1943503 chr12:1943505 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_101032 0 0 0 0 1 LRTM2 chr12:1943433 3'AG 1943433 Downstream 73bp
chr12 21615791 21615791 1 + C A READ 21615787 + 21615767 21615807 41 TCCTGGCAGCTGAGCCCAGTCTGGCAGCAGGTAAGCTAGCA TCCTGGCAGCTGAGCCCAGTCTGGAAGCAGGTAAGCTAGCA < 41bp 0.570878294974229 0.88506436961351 0.12700114 0.22171134 prediction 0.628372149278561 Functional Gain - PYROXD1 ENSG00000121350 CDS Human protein_coding chr12:21615787 chr12:21615791 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_101038 0 0 0 0 1 PYROXD1 chr12:21615796 5'GT 21615796 Upstream 6bp
chr17 18344639 18344639 1 + T G OV 18344636 + 18344616 18344656 41 TGGCCTACCTGAGGAAGAACCACTAGGAGGTGTGGTTGCTG TGGCCTACCTGAGGAAGAACCACGAGGAGGTGTGGTTGCTG < 41bp 0.523430388072037 0.837600918454415 0.5189401 0.8362901 prediction 0.628341060764756 Functional Gain - KRT16P1 ENSG00000214856 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:18344636 chr17:18344639 . . 0 24 hm5C_associated_SNPs_101040 0 0 0 1 1 KRT16P1 chr17:18344644 5'GT 18344644 Upstream 6bp
chr5 148586606 148586606 1 + C A OV 148586602 + 148586582 148586622 41 TGCAAGGAGGAGATCAAGCACGGCCAGTCACTCCTGGCTCT TGCAAGGAGGAGATCAAGCACGGCAAGTCACTCCTGGCTCT < 41bp 0.579976565262291 0.894104573817808 0.63652945 0.53237927 prediction 0.628256017111033 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148586602 chr5:148586606 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_101043 0 0 0 0 2 ABLIM3 chr5:148586571 3'AG 148586571 Downstream 36bp
chr5 148586606 148586606 1 + C A OV 148586602 + 148586582 148586622 41 TGCAAGGAGGAGATCAAGCACGGCCAGTCACTCCTGGCTCT TGCAAGGAGGAGATCAAGCACGGCAAGTCACTCCTGGCTCT < 41bp 0.579976565262291 0.894104573817808 0.63652945 0.53237927 prediction 0.628256017111033 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148586602 chr5:148586606 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_101043 0 0 0 0 2 ABLIM3 chr5:148586697 5'GT 148586697 Upstream 92bp
chr15 45448056 45448056 1 + C A THCA 45448052 + 45448032 45448072 41 GCCATCATGTATGTCTTTGCCTCCCACCACTTCCGCCGCCG GCCATCATGTATGTCTTTGCCTCCAACCACTTCCGCCGCCG < 41bp 0.396394506087358 0.814074807543977 0.19572496 0.9623095 prediction 0.628149615087954 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45448052 chr15:45448056 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_101045 0 0 0 0 2 DUOX1 chr15:45448000 3'AG 45448000 Downstream 57bp
chr15 45448056 45448056 1 + C A THCA 45448052 + 45448032 45448072 41 GCCATCATGTATGTCTTTGCCTCCCACCACTTCCGCCGCCG GCCATCATGTATGTCTTTGCCTCCAACCACTTCCGCCGCCG < 41bp 0.396394506087358 0.814074807543977 0.19572496 0.9623095 prediction 0.628149615087954 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45448052 chr15:45448056 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_101045 0 0 0 0 2 DUOX1 chr15:45448127 5'GT 45448127 Upstream 72bp
chr1 154408493 154408493 1 + C A BLCA 154408489 + 154408469 154408509 41 GTCATCCACGACGCCTGGAGCGGCCTGAGGCACGTGGTGCA GTCATCCACGACGCCTGGAGCGGCATGAGGCACGTGGTGCA < 41bp 0.577999888883361 0.892018655980457 0.8489183 0.89909375 prediction 0.628037534194192 Functional Gain - IL6R ENSG00000160712 CDS Human protein_coding chr1:154408489 chr1:154408493 nonsynonymous SNV 0.039 0 25 hm5C_associated_SNPs_101051 0 0 0 0 2 IL6R chr1:154408445 3'AG 154408445 Downstream 49bp
chr1 154408493 154408493 1 + C A BLCA 154408489 + 154408469 154408509 41 GTCATCCACGACGCCTGGAGCGGCCTGAGGCACGTGGTGCA GTCATCCACGACGCCTGGAGCGGCATGAGGCACGTGGTGCA < 41bp 0.577999888883361 0.892018655980457 0.8489183 0.89909375 prediction 0.628037534194192 Functional Gain - IL6R ENSG00000160712 CDS Human protein_coding chr1:154408489 chr1:154408493 nonsynonymous SNV 0.039 0 25 hm5C_associated_SNPs_101051 0 0 0 0 2 IL6R chr1:154408586 5'GT 154408586 Upstream 94bp
chr5 121761214 121761214 1 + C A rs147419360 121761210 + 121761190 121761230 41 CACTGAGAAGTTGACTCCAGCAGGCCTGGCCATTAAGGTGA CACTGAGAAGTTGACTCCAGCAGGACTGGCCATTAAGGTGA < 41bp 0.551069329058555 0.865013938070908 0.9131373 0.9148159 prediction 0.627889218024707 Functional Gain - SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121761210 chr5:121761214 synonymous SNV . 0 25 hm5C_associated_SNPs_101054 0 0 0 0 1 SNCAIP chr5:121761226 5'GT 121761226 Upstream 13bp
chr16 28878696 28878696 1 + C A LUAD 28878692 + 28878672 28878712 41 CATCCCCTGCTCTTCTATCACAGACGTCCGGACAACCACAG CATCCCCTGCTCTTCTATCACAGAAGTCCGGACAACCACAG < 41bp 0.425682594120206 0.813877800467162 0.9354928 0.9267609 prediction 0.627755600934324 Functional Gain - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28878692 chr16:28878696 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_101056 0 0 1 0 3 SH2B1 chr16:28878652 3'AG 28878652 Downstream 45bp
chr16 28878696 28878696 1 + C A LUAD 28878692 + 28878672 28878712 41 CATCCCCTGCTCTTCTATCACAGACGTCCGGACAACCACAG CATCCCCTGCTCTTCTATCACAGAAGTCCGGACAACCACAG < 41bp 0.425682594120206 0.813877800467162 0.9354928 0.9267609 prediction 0.627755600934324 Functional Gain - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28878692 chr16:28878696 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_101056 0 0 1 0 3 SH2B1 chr16:28878695 3'AG 28878695 Downstream 2bp
chr16 28878696 28878696 1 + C A LUAD 28878692 + 28878672 28878712 41 CATCCCCTGCTCTTCTATCACAGACGTCCGGACAACCACAG CATCCCCTGCTCTTCTATCACAGAAGTCCGGACAACCACAG < 41bp 0.425682594120206 0.813877800467162 0.9354928 0.9267609 prediction 0.627755600934324 Functional Gain - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28878692 chr16:28878696 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_101056 0 0 1 0 3 SH2B1 chr16:28878753 5'GT 28878753 Upstream 58bp
chr4 110415815 110415815 1 + C A UCEC 110415811 + 110415791 110415831 41 AGCAGTCCTGCTCCTGATCCCGCCCCTGAACCTGATCCTGC AGCAGTCCTGCTCCTGATCCCGCCACTGAACCTGATCCTGC < 41bp 0.415319737543478 0.813861614274826 0.0815649 0.5531588 prediction 0.627723228549653 Functional Gain - SEC24B ENSG00000138802 CDS Human protein_coding chr4:110415811 chr4:110415815 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_101057 0 0 1 0 1 SEC24B chr4:110415771 3'AG 110415771 Downstream 45bp
chr17 33321390 33321390 1 + T G HNSC 33321388 + 33321368 33321408 41 ATGGAGAGCGAGTCCAGGTGCATAAGAATGGAGACCACTTC ATGGAGAGCGAGTCCAGGTGCAGAAGAATGGAGACCACTTC < 41bp 0.492040205188945 0.813465181271307 0.13818112 0.35581037 prediction 0.626930362542614 Functional Gain - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33321388 chr17:33321390 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_101071 0 0 1 0 1 LIG3 chr17:33321295 3'AG 33321295 Downstream 96bp
chr19 42222121 42222121 1 + C A LUSC 42222117 + 42222097 42222137 41 GGGGTGAACCTCAGCCTCTCCTGCCATGCAGCCTCTAACCC GGGGTGAACCTCAGCCTCTCCTGCAATGCAGCCTCTAACCC < 41bp 0.401134715804399 0.813367354357853 0.09375468 0.26961994 prediction 0.626734708715706 Functional Gain - CEACAM5 ENSG00000105388 CDS Human protein_coding chr19:42222117 chr19:42222121 nonsynonymous SNV 0.206 0 25 hm5C_associated_SNPs_101077 0 0 0 0 1 CEACAM5 chr19:42222047 3'AG 42222047 Downstream 75bp
chr2 241531477 241531477 1 + C A rs3792268 241531473 + 241531453 241531493 41 GGAAGCGGAGGCCAGCAGGACAGGCCAGGCCGCTGGGAGCA GGAAGCGGAGGCCAGCAGGACAGGACAGGCCGCTGGGAGCA < 41bp 0.568750029844698 0.882108731225434 0.82984775 0.8557401 prediction 0.626717402761473 Functional Gain - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241531473 chr2:241531477 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_101079 0 0 1 0 1 CAPN10 chr2:241531567 5'GT 241531567 Upstream 91bp
chr13 24233255 24233255 1 + C A GBM 24233251 + 24233231 24233271 41 CCAGCCCACGGGACACGGCGCTGGCTGCCGTTATCTGCAGC CCAGCCCACGGGACACGGCGCTGGATGCCGTTATCTGCAGC < 41bp 0.579951551716136 0.893298020102965 0.3194166 0.41310093 prediction 0.626692936773658 Functional Gain - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24233251 chr13:24233255 nonsynonymous SNV 0.053 4 25 hm5C_associated_SNPs_101080 0 0 1 0 2 TNFRSF19 chr13:24233189 3'AG 24233189 Downstream 67bp
chr13 24233255 24233255 1 + C A GBM 24233251 + 24233231 24233271 41 CCAGCCCACGGGACACGGCGCTGGCTGCCGTTATCTGCAGC CCAGCCCACGGGACACGGCGCTGGATGCCGTTATCTGCAGC < 41bp 0.579951551716136 0.893298020102965 0.3194166 0.41310093 prediction 0.626692936773658 Functional Gain - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24233251 chr13:24233255 nonsynonymous SNV 0.053 4 25 hm5C_associated_SNPs_101080 0 0 1 0 2 TNFRSF19 chr13:24233353 5'GT 24233353 Upstream 99bp
chr20 30602789 30602789 1 + C A LUSC 30602785 + 30602765 30602805 41 GTAGGAGCAGCGTGAGCCGCCGGCCCCTGCACTCGATGCCC GTAGGAGCAGCGTGAGCCGCCGGCACCTGCACTCGATGCCC < 41bp 0.574820123124217 0.888133202255913 0.15841094 0.39120495 prediction 0.626626158263393 Functional Gain - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30602785 chr20:30602789 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_101084 0 0 0 0 2 CCM2L chr20:30602707 3'AG 30602707 Downstream 83bp
chr20 30602789 30602789 1 + C A LUSC 30602785 + 30602765 30602805 41 GTAGGAGCAGCGTGAGCCGCCGGCCCCTGCACTCGATGCCC GTAGGAGCAGCGTGAGCCGCCGGCACCTGCACTCGATGCCC < 41bp 0.574820123124217 0.888133202255913 0.15841094 0.39120495 prediction 0.626626158263393 Functional Gain - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30602785 chr20:30602789 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_101084 0 0 0 0 2 CCM2L chr20:30602874 5'GT 30602874 Upstream 86bp
chr6 170190418 170190418 1 + T G rs3823467 170190415 + 170190395 170190435 41 GCGGGGCACGGGGTGGCGCTCCCTGGTAAAGCAGCGGCCAG GCGGGGCACGGGGTGGCGCTCCCGGGTAAAGCAGCGGCCAG < 41bp 0.540203721773555 0.853431984195825 0.27936226 0.87389815 prediction 0.626456524844541 Functional Gain - LINC00242;LINC00574 ENSG00000229214;ENSG00000231690 ncRNA_exonic Human other chr6:170190415 chr6:170190418 . . 0 24 hm5C_associated_SNPs_101087 0 0 0 0 1 LINC00242;LINC00574 chr6:170190512 5'GT 170190512 Upstream 95bp
chr11 118405257 118405257 1 + C A rs143259331 118405253 + 118405233 118405273 41 CTCCCAGTGCTGGGCTATATCTATCGAGTGTCCAGCGTGAG CTCCCAGTGCTGGGCTATATCTATAGAGTGTCCAGCGTGAG < 41bp 0.440341238528448 0.813217257055177 0.067076 0.101563394 prediction 0.626434514110353 Functional Gain - TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118405253 chr11:118405257 synonymous SNV . 0 25 hm5C_associated_SNPs_101088 0 0 1 0 1 TMEM25 chr11:118405222 3'AG 118405222 Downstream 36bp
chr15 72103837 72103837 1 + C A UCEC 72103833 + 72103813 72103853 41 TGCCCCTCAGGCGTGAGCCCCTCGCTCCAGTGCCGCGTGTG TGCCCCTCAGGCGTGAGCCCCTCGATCCAGTGCCGCGTGTG < 41bp 0.456102015381469 0.813100712743321 0.5187929 0.8956542 prediction 0.626201425486642 Functional Gain - NR2E3 ENSG00000031544 ncRNA_exonic Human other chr15:72103833 chr15:72103837 . 0.995 1 25 hm5C_associated_SNPs_101094 0 0 0 0 1 NR2E3 chr15:72103823 3'AG 72103823 Downstream 15bp
chr19 45208901 45208901 1 + C A COAD 45208897 + 45208877 45208917 41 GCCATCCTCCAGGATTCCACCACCCGCACAGGCTGCACCAT GCCATCCTCCAGGATTCCACCACCAGCACAGGCTGCACCAT < 41bp 0.40949597675722 0.813036935897393 0.07600132 0.1395719 prediction 0.626073871794786 Functional Gain - CEACAM16 ENSG00000213892 CDS Human protein_coding chr19:45208897 chr19:45208901 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_101097 0 0 0 0 1 CEACAM16 chr19:45208860 3'AG 45208860 Downstream 42bp
chr20 56139608 56139608 1 + C A UCEC 56139604 + 56139584 56139624 41 CCAGTGCCCCATCATTGATGCTGCCTGGGAGTCTCCGGAAG CCAGTGCCCCATCATTGATGCTGCATGGGAGTCTCCGGAAG < 41bp 0.400281451524194 0.813033915143581 0.07846138 0.28966454 prediction 0.626067830287163 Functional Gain - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56139604 chr20:56139608 synonymous SNV . 0 25 hm5C_associated_SNPs_101098 0 0 1 0 2 PCK1 chr20:56139538 3'AG 56139538 Downstream 71bp
chr20 56139608 56139608 1 + C A UCEC 56139604 + 56139584 56139624 41 CCAGTGCCCCATCATTGATGCTGCCTGGGAGTCTCCGGAAG CCAGTGCCCCATCATTGATGCTGCATGGGAGTCTCCGGAAG < 41bp 0.400281451524194 0.813033915143581 0.07846138 0.28966454 prediction 0.626067830287163 Functional Gain - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56139604 chr20:56139608 synonymous SNV . 0 25 hm5C_associated_SNPs_101098 0 0 1 0 2 PCK1 chr20:56139669 5'GT 56139669 Upstream 62bp
chr8 2037957 2037957 1 + C A THCA 2037953 + 2037933 2037973 41 TTCCGAGTGCTGTCAGCAAACCGGCATGGCCTGAGCGAACC TTCCGAGTGCTGTCAGCAAACCGGAATGGCCTGAGCGAACC < 41bp 0.419378287352107 0.813003149073135 0.32080418 0.36288068 prediction 0.626006298146271 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2037953 chr8:2037957 nonsynonymous SNV 0.060 1 25 hm5C_associated_SNPs_101101 0 0 0 0 1 MYOM2 chr8:2038014 5'GT 2038014 Upstream 58bp
chr15 63579688 63579688 1 + T A LAML 63579684 + 63579664 63579704 41 TTTGTGAATACCCTATCTGACTCCTTGGGGCCAGGCACAGT TTTGTGAATACCCTATCTGACTCCATGGGGCCAGGCACAGT < 41bp 0.483716599227805 0.812962044213644 0.20748156 0.9612688 prediction 0.625924088427289 Functional Gain - APH1B ENSG00000138613 CDS Human protein_coding chr15:63579684 chr15:63579688 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_101107 0 0 1 0 2 APH1B chr15:63579623 3'AG 63579623 Downstream 66bp
chr15 63579688 63579688 1 + T A LAML 63579684 + 63579664 63579704 41 TTTGTGAATACCCTATCTGACTCCTTGGGGCCAGGCACAGT TTTGTGAATACCCTATCTGACTCCATGGGGCCAGGCACAGT < 41bp 0.483716599227805 0.812962044213644 0.20748156 0.9612688 prediction 0.625924088427289 Functional Gain - APH1B ENSG00000138613 CDS Human protein_coding chr15:63579684 chr15:63579688 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_101107 0 0 1 0 2 APH1B chr15:63579745 5'GT 63579745 Upstream 58bp
chr10 102566326 102566326 1 + C A LUSC 102566322 + 102566302 102566342 41 CTTTGAGCGTCCTTCCTACCCTGACGTCTTCCAGGCATCAG CTTTGAGCGTCCTTCCTACCCTGAAGTCTTCCAGGCATCAG < 41bp 0.415457167133338 0.812919015517627 0.042304575 0.06861696 prediction 0.625838031035254 Functional Gain - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102566322 chr10:102566326 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_101111 0 0 0 0 1 PAX2 chr10:102566362 5'GT 102566362 Upstream 37bp
chr12 108618551 108618551 1 + C A LUAD 108618547 + 108618527 108618567 41 GTGTTCCGGGGCTGCTTCCGCAGGCCCGACAACCTTTCCCT GTGTTCCGGGGCTGCTTCCGCAGGACCGACAACCTTTCCCT < 41bp 0.572988416015173 0.885851458780215 0.9131174 0.92214376 prediction 0.625726085530084 Functional Gain - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108618547 chr12:108618551 nonsynonymous SNV 0.193 3 25 hm5C_associated_SNPs_101114 0 0 0 0 1 WSCD2 chr12:108618637 5'GT 108618637 Upstream 87bp
chr5 15928534 15928534 1 + C A UCEC 15928530 + 15928510 15928550 41 ACTGAGGCGACTGGAAGTCTCAGGCTGTTACAATATCTCCA ACTGAGGCGACTGGAAGTCTCAGGATGTTACAATATCTCCA < 41bp 0.554313558536646 0.867161760144402 0.9335631 0.9439151 prediction 0.625696403215511 Functional Gain - FBXL7 ENSG00000183580 CDS Human protein_coding chr5:15928530 chr5:15928534 synonymous SNV . 0 25 hm5C_associated_SNPs_101115 0 0 0 0 1 FBXL7 chr5:15928610 5'GT 15928610 Upstream 77bp
chr3 44945414 44945414 1 + C A LUSC 44945410 + 44945390 44945430 41 GGACGGATGCCTGGATGAAGCGACCGGATCTGCCCAAGGGC GGACGGATGCCTGGATGAAGCGACAGGATCTGCCCAAGGGC < 41bp 0.564432369254742 0.877279927175178 0.34931016 0.36329144 prediction 0.625695115840873 Functional Gain - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44945410 chr3:44945414 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_101116 0 0 0 0 1 TGM4 chr3:44945376 3'AG 44945376 Downstream 39bp
chr12 56113380 56113380 1 + C A PAAD 56113376 + 56113356 56113396 41 ATGTCTACAAAGGGCAGCTGCAGTCTGCCCCTTCCTAGCCC ATGTCTACAAAGGGCAGCTGCAGTATGCCCCTTCCTAGCCC < 41bp 0.431260897553887 0.812779432904297 0.03358239 0.057264566 prediction 0.625558865808593 Functional Gain - BLOC1S1 ENSG00000135441 CDS Human protein_coding chr12:56113376 chr12:56113380 nonsynonymous SNV 0.845 3 25 hm5C_associated_SNPs_101119 0 0 1 0 1 BLOC1S1 chr12:56113283 3'AG 56113283 Downstream 98bp
chr1 207317924 207317924 1 + C A LUAD 207317920 + 207317900 207317940 41 AGGCTGTGAACAAGTGCTCACAGGCAAAAGACTCATGCAGT AGGCTGTGAACAAGTGCTCACAGGAAAAAGACTCATGCAGT < 41bp 0.550979084132666 0.863750002859639 0.8058754 0.898805 prediction 0.625541837453945 Functional Gain - C4BPA ENSG00000123838 CDS Human protein_coding chr1:207317920 chr1:207317924 synonymous SNV . 0 25 hm5C_associated_SNPs_101120 0 0 0 0 1 C4BPA chr1:207317889 3'AG 207317889 Downstream 36bp
chr7 63726294 63726294 1 + C A LUSC 63726290 + 63726270 63726310 41 TCAGTTATGTGTTCTCATTTCACCCAAGACCTTCCGCCAGA TCAGTTATGTGTTCTCATTTCACCAAAGACCTTCCGCCAGA < 41bp 0.436651433730218 0.812747996105962 0.04497671 0.28515673 prediction 0.625495992211924 Functional Gain - ZNF679 ENSG00000197123 CDS Human protein_coding chr7:63726290 chr7:63726294 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_101122 0 0 0 0 1 ZNF679 chr7:63726274 3'AG 63726274 Downstream 21bp
chr1 150478148 150478148 1 + C A UCS 150478144 + 150478124 150478164 41 CTGACCCTCAGCCGGAGAATCCGCCGGGCCCAGCTTGCCCA CTGACCCTCAGCCGGAGAATCCGCAGGGCCCAGCTTGCCCA < 41bp 0.411930991397579 0.812742976649498 0.19083261 0.29661462 prediction 0.625485953298997 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150478144 chr1:150478148 synonymous SNV . 0 25 hm5C_associated_SNPs_101123 0 0 0 0 2 TARS2 chr1:150478067 3'AG 150478067 Downstream 82bp
chr1 150478148 150478148 1 + C A UCS 150478144 + 150478124 150478164 41 CTGACCCTCAGCCGGAGAATCCGCCGGGCCCAGCTTGCCCA CTGACCCTCAGCCGGAGAATCCGCAGGGCCCAGCTTGCCCA < 41bp 0.411930991397579 0.812742976649498 0.19083261 0.29661462 prediction 0.625485953298997 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150478144 chr1:150478148 synonymous SNV . 0 25 hm5C_associated_SNPs_101123 0 0 0 0 2 TARS2 chr1:150478181 5'GT 150478181 Upstream 34bp
chrX 49019193 49019193 1 + T G rs180696077 49019190 + 49019170 49019210 41 CCCCAGAGCTCAAAACTCGTCGCTGGCTGCCCTGCGTCCAC CCCCAGAGCTCAAAACTCGTCGCGGGCTGCCCTGCGTCCAC < 41bp 0.559381871737779 0.872122542995424 0.17455098 0.6016925 prediction 0.625481342515289 Functional Gain - MAGIX ENSG00000017621 UTR5 Human other chrX:49019190 chrX:49019193 . . 0 24 hm5C_associated_SNPs_101124 0 0 0 0 1 MAGIX chrX:49019276 5'GT 49019276 Upstream 84bp
chr1 78959186 78959186 1 + C A LUSC 78959182 + 78959162 78959202 41 TGGAAATGGTAATCCAGCTCCTGGCGATAATGTGTGTCTCC TGGAAATGGTAATCCAGCTCCTGGAGATAATGTGTGTCTCC < 41bp 0.440174382966382 0.812626169360193 0.121326834 0.16013506 prediction 0.625252338720385 Functional Gain - PTGFR ENSG00000122420 CDS Human protein_coding chr1:78959182 chr1:78959186 nonsynonymous SNV 0.833 4 25 hm5C_associated_SNPs_101128 0 0 0 0 1 PTGFR chr1:78959226 5'GT 78959226 Upstream 41bp
chr4 59362 59362 1 + C A UCEC 59358 + 59338 59378 41 AGGGATGTGGCCATAGAATTCTCCCCTGAAGAGTGGAAATG AGGGATGTGGCCATAGAATTCTCCACTGAAGAGTGGAAATG < 41bp 0.412273038807661 0.812583640898823 0.10662413 0.9365641 prediction 0.625167281797645 Functional Gain - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:59358 chr4:59362 nonsynonymous SNV 0.076 1 25 hm5C_associated_SNPs_101129 0 0 1 0 2 ZNF595;ZNF718 chr4:59323 3'AG 59323 Downstream 40bp
chr4 59362 59362 1 + C A UCEC 59358 + 59338 59378 41 AGGGATGTGGCCATAGAATTCTCCCCTGAAGAGTGGAAATG AGGGATGTGGCCATAGAATTCTCCACTGAAGAGTGGAAATG < 41bp 0.412273038807661 0.812583640898823 0.10662413 0.9365641 prediction 0.625167281797645 Functional Gain - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:59358 chr4:59362 nonsynonymous SNV 0.076 1 25 hm5C_associated_SNPs_101129 0 0 1 0 2 ZNF595;ZNF718 chr4:59449 5'GT 59449 Upstream 88bp
chr3 111432892 111432892 1 + T G LUAD 111432890 + 111432870 111432910 41 GGGCCTCACGGGGCTCCTTCCATGTCTCCCAAGCGATCCTC GGGCCTCACGGGGCTCCTTCCAGGTCTCCCAAGCGATCCTC < 41bp 0.529805184973106 0.842347130818035 0.21270505 0.77107155 prediction 0.625083891689857 Functional Gain - PLCXD2 ENSG00000240891 CDS Human protein_coding chr3:111432890 chr3:111432892 nonsynonymous SNV 0.973 2 23 hm5C_associated_SNPs_101132 0 0 0 0 1 PLCXD2 chr3:111432975 5'GT 111432975 Upstream 84bp
chr19 6924767 6924767 1 + T A LAML 6924763 + 6924743 6924783 41 TGCCTCGTCTTGGCCATCGCCACCTTTCTGCTGTGTCGCTC TGCCTCGTCTTGGCCATCGCCACCATTCTGCTGTGTCGCTC < 41bp 0.491535145056764 0.812538210918714 0.13464853 0.09908667 prediction 0.625076421837428 Functional Gain - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6924763 chr19:6924767 nonsynonymous SNV 0.913 3 25 hm5C_associated_SNPs_101133 0 0 0 0 1 ADGRE1 chr19:6924689 3'AG 6924689 Downstream 79bp
chr17 8216853 8216853 1 + T A LUSC 8216849 + 8216829 8216869 41 TGATGAAGCTCCTCAGAATACTCCTCCAGCAACTGTGGAGG TGATGAAGCTCCTCAGAATACTCCACCAGCAACTGTGGAGG < 41bp 0.479971530818526 0.812404596456429 0.06344277 0.8281509 prediction 0.624809192912858 Functional Gain - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8216849 chr17:8216853 synonymous SNV . 0 25 hm5C_associated_SNPs_101141 0 0 0 0 2 ARHGEF15 chr17:8216819 3'AG 8216819 Downstream 35bp
chr17 8216853 8216853 1 + T A LUSC 8216849 + 8216829 8216869 41 TGATGAAGCTCCTCAGAATACTCCTCCAGCAACTGTGGAGG TGATGAAGCTCCTCAGAATACTCCACCAGCAACTGTGGAGG < 41bp 0.479971530818526 0.812404596456429 0.06344277 0.8281509 prediction 0.624809192912858 Functional Gain - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8216849 chr17:8216853 synonymous SNV . 0 25 hm5C_associated_SNPs_101141 0 0 0 0 2 ARHGEF15 chr17:8216873 5'GT 8216873 Upstream 21bp
chr15 25488635 25488635 1 + C A COAD 25488631 + 25488611 25488651 41 GTTCCTGGGCCAGTGGCCATCAGCCTGTTGCCCAGCCCCTG GTTCCTGGGCCAGTGGCCATCAGCATGTTGCCCAGCCCCTG < 41bp 0.507726567246788 0.820067375527814 0.75759625 0.81914496 prediction 0.624681616562051 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25488631 chr15:25488635 . . 0 25 hm5C_associated_SNPs_101144 0 0 0 0 2 SNHG14 chr15:25488574 3'AG 25488574 Downstream 62bp
chr15 25488635 25488635 1 + C A COAD 25488631 + 25488611 25488651 41 GTTCCTGGGCCAGTGGCCATCAGCCTGTTGCCCAGCCCCTG GTTCCTGGGCCAGTGGCCATCAGCATGTTGCCCAGCCCCTG < 41bp 0.507726567246788 0.820067375527814 0.75759625 0.81914496 prediction 0.624681616562051 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25488631 chr15:25488635 . . 0 25 hm5C_associated_SNPs_101144 0 0 0 0 2 SNHG14 chr15:25488704 5'GT 25488704 Upstream 70bp
chr7 135282874 135282874 1 + C A LUSC 135282870 + 135282850 135282890 41 GGGTGCTGGACTGCGGCCCCCTGGCTTTGACCCTTATTTGC GGGTGCTGGACTGCGGCCCCCTGGATTTGACCCTTATTTGC < 41bp 0.419973574545393 0.812339372501362 0.039848685 0.23076963 prediction 0.624678745002725 Functional Gain - NUP205 ENSG00000155561 CDS Human protein_coding chr7:135282870 chr7:135282874 synonymous SNV . 0 25 hm5C_associated_SNPs_101145 0 0 1 0 1 NUP205 chr7:135282955 5'GT 135282955 Upstream 82bp
chr19 55889176 55889176 1 + T G UCEC 55889174 + 55889154 55889194 41 TGCCTCCCTTGTCCAGAAAACGTGCGGAGGAAGCACATGTG TGCCTCCCTTGTCCAGAAAACGGGCGGAGGAAGCACATGTG < 41bp 0.51527940687241 0.827587063121582 0.30122632 0.8885894 prediction 0.624615312498342 Functional Gain - TMEM190 ENSG00000160472 CDS Human protein_coding chr19:55889174 chr19:55889176 nonsynonymous SNV 0.945 1 23 hm5C_associated_SNPs_101147 0 0 0 0 1 TMEM190 chr19:55889170 3'AG 55889170 Downstream 7bp
chr6 35209384 35209384 1 + C A STAD 35209380 + 35209360 35209400 41 CATGCTCAGCTGCAACCGGTCTGGCAAGAAGGACACCTGTG CATGCTCAGCTGCAACCGGTCTGGAAAGAAGGACACCTGTG < 41bp 0.418131478644117 0.812246117887222 0.8066939 0.8733607 prediction 0.624492235774444 Functional Gain - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35209380 chr6:35209384 synonymous SNV . 0 25 hm5C_associated_SNPs_101152 0 0 0 0 2 SCUBE3 chr6:35209320 3'AG 35209320 Downstream 65bp
chr6 35209384 35209384 1 + C A STAD 35209380 + 35209360 35209400 41 CATGCTCAGCTGCAACCGGTCTGGCAAGAAGGACACCTGTG CATGCTCAGCTGCAACCGGTCTGGAAAGAAGGACACCTGTG < 41bp 0.418131478644117 0.812246117887222 0.8066939 0.8733607 prediction 0.624492235774444 Functional Gain - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35209380 chr6:35209384 synonymous SNV . 0 25 hm5C_associated_SNPs_101152 0 0 0 0 2 SCUBE3 chr6:35209436 5'GT 35209436 Upstream 53bp
chr1 89848293 89848293 1 + C A rs78680245 89848289 + 89848269 89848309 41 AGTCATCTGTTCAATACTGCCAGGCTAAACTCAATGAGCTC AGTCATCTGTTCAATACTGCCAGGATAAACTCAATGAGCTC < 41bp 0.432119648627535 0.81220800977572 0.8501564 0.79335165 prediction 0.62441601955144 Functional Gain - GBP6 ENSG00000183347 CDS Human protein_coding chr1:89848289 chr1:89848293 nonsynonymous SNV 0.025 0 25 hm5C_associated_SNPs_101154 0 0 0 0 1 GBP6 chr1:89848223 3'AG 89848223 Downstream 71bp
chr17 74141570 74141570 1 + C A rs541308339 74141566 + 74141546 74141586 41 CTGAGACTCCGATGACGGTGCGAGCCACAGCACTCGTGTGT CTGAGACTCCGATGACGGTGCGAGACACAGCACTCGTGTGT < 41bp 0.461635127487984 0.812192126095328 0.32978493 0.80749017 prediction 0.624384252190656 Functional Gain - RNF157-AS1 ENSG00000267128 ncRNA_exonic Human antisense chr17:74141566 chr17:74141570 . . 0 25 hm5C_associated_SNPs_101155 0 0 0 0 2 RNF157-AS1 chr17:74141503 3'AG 74141503 Downstream 68bp
chr17 74141570 74141570 1 + C A rs541308339 74141566 + 74141546 74141586 41 CTGAGACTCCGATGACGGTGCGAGCCACAGCACTCGTGTGT CTGAGACTCCGATGACGGTGCGAGACACAGCACTCGTGTGT < 41bp 0.461635127487984 0.812192126095328 0.32978493 0.80749017 prediction 0.624384252190656 Functional Gain - RNF157-AS1 ENSG00000267128 ncRNA_exonic Human antisense chr17:74141566 chr17:74141570 . . 0 25 hm5C_associated_SNPs_101155 0 0 0 0 2 RNF157-AS1 chr17:74141645 5'GT 74141645 Upstream 76bp
chr22 31591512 31591512 1 + C A rs61736799 31591508 + 31591488 31591528 41 CCTGTTTGCAAAGCTGGCATCAGCCGAGACAAGGTCATCCC CCTGTTTGCAAAGCTGGCATCAGCAGAGACAAGGTCATCCC < 41bp 0.57788724289272 0.890036901710336 0.36213493 0.54803973 prediction 0.624299317635232 Functional Gain - RNF185 ENSG00000138942 CDS Human protein_coding chr22:31591508 chr22:31591512 synonymous SNV . 0 25 hm5C_associated_SNPs_101158 0 0 0 0 2 RNF185 chr22:31591455 3'AG 31591455 Downstream 58bp
chr22 31591512 31591512 1 + C A rs61736799 31591508 + 31591488 31591528 41 CCTGTTTGCAAAGCTGGCATCAGCCGAGACAAGGTCATCCC CCTGTTTGCAAAGCTGGCATCAGCAGAGACAAGGTCATCCC < 41bp 0.57788724289272 0.890036901710336 0.36213493 0.54803973 prediction 0.624299317635232 Functional Gain - RNF185 ENSG00000138942 CDS Human protein_coding chr22:31591508 chr22:31591512 synonymous SNV . 0 25 hm5C_associated_SNPs_101158 0 0 0 0 2 RNF185 chr22:31591567 5'GT 31591567 Upstream 56bp
chr3 33418790 33418790 1 + C A THCA 33418786 + 33418766 33418806 41 ATTTTGGAGGCTGCCCGATGCTCCCATTTGACTGACGCAGG ATTTTGGAGGCTGCCCGATGCTCCAATTTGACTGACGCAGG < 41bp 0.39846340663656 0.812101833699771 0.046100974 0.6849761 prediction 0.624203667399542 Functional Gain - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33418786 chr3:33418790 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_101160 0 0 0 0 2 FBXL2 chr3:33418765 3'AG 33418765 Downstream 26bp
chr3 33418790 33418790 1 + C A THCA 33418786 + 33418766 33418806 41 ATTTTGGAGGCTGCCCGATGCTCCCATTTGACTGACGCAGG ATTTTGGAGGCTGCCCGATGCTCCAATTTGACTGACGCAGG < 41bp 0.39846340663656 0.812101833699771 0.046100974 0.6849761 prediction 0.624203667399542 Functional Gain - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33418786 chr3:33418790 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_101160 0 0 0 0 2 FBXL2 chr3:33418825 5'GT 33418825 Upstream 36bp
chr15 29398883 29398883 1 + C A COAD 29398879 + 29398859 29398899 41 AGTCGGGCTGGGGCTCCATCCTGCCCACGGTGATCCTGGCC AGTCGGGCTGGGGCTCCATCCTGCACACGGTGATCCTGGCC < 41bp 0.584728519186594 0.896828076513806 0.28420073 0.32020783 prediction 0.624199114654425 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29398879 chr15:29398883 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_101161 0 0 1 0 1 APBA2 chr15:29398810 3'AG 29398810 Downstream 74bp
chr20 44747004 44747004 1 + T G rs113207193 44747001 + 44746981 44747021 41 CTATGGTTCGTCTGCCTCTGCAGTGCGTCCTCTGGGGCTGC CTATGGTTCGTCTGCCTCTGCAGGGCGTCCTCTGGGGCTGC < 41bp 0.432733118801006 0.812072674160292 0.16610819 0.86494815 prediction 0.624145348320583 Functional Gain - CD40 ENSG00000101017 CDS Human protein_coding chr20:44747001 chr20:44747004 nonsynonymous SNV 0.007 3 24 hm5C_associated_SNPs_101163 0 0 1 0 1 CD40 chr20:44747033 5'GT 44747033 Upstream 30bp
chr20 55206728 55206728 1 + C A GBM 55206724 + 55206704 55206744 41 CCTGGGGCTCCACGACATGCCTCACCAGATGGACGAGGTGC CCTGGGGCTCCACGACATGCCTCAACAGATGGACGAGGTGC < 41bp 0.406548068529289 0.811995011769852 0.12038997 0.1771752 prediction 0.623990023539703 Functional Gain - TFAP2C ENSG00000087510 CDS Human protein_coding chr20:55206724 chr20:55206728 nonsynonymous SNV 0.926 0 25 hm5C_associated_SNPs_101167 0 0 1 0 1 TFAP2C chr20:55206746 5'GT 55206746 Upstream 19bp
chr16 66423306 66423306 1 + C A UCEC 66423302 + 66423282 66423322 41 AAAGCTTGGACCGAGAGAAGCAGGCCAGGTATGAGATCGTG AAAGCTTGGACCGAGAGAAGCAGGACAGGTATGAGATCGTG < 41bp 0.424032517103092 0.811956916084825 0.86120427 0.8946458 prediction 0.62391383216965 Functional Gain - CDH5 ENSG00000179776 CDS Human protein_coding chr16:66423302 chr16:66423306 nonsynonymous SNV 0.513 0 25 hm5C_associated_SNPs_101168 0 0 0 0 1 CDH5 chr16:66423261 3'AG 66423261 Downstream 46bp
chr13 115004884 115004884 1 + T G KIRC 115004881 + 115004861 115004901 41 CTTGACATGGAAGAGCCCATCAATAAAAGATTATTTGAAAA CTTGACATGGAAGAGCCCATCAAGAAAAGATTATTTGAAAA < 41bp 0.545497042269111 0.857446472071037 0.06338233 0.25631747 prediction 0.623898859603851 Functional Gain - CDC16 ENSG00000130177 CDS Human protein_coding chr13:115004881 chr13:115004884 nonsynonymous SNV 0.979 2 24 hm5C_associated_SNPs_101169 0 0 1 0 3 CDC16 chr13:115004785 3'AG 115004785 Downstream 100bp
chr13 115004884 115004884 1 + T G KIRC 115004881 + 115004861 115004901 41 CTTGACATGGAAGAGCCCATCAATAAAAGATTATTTGAAAA CTTGACATGGAAGAGCCCATCAAGAAAAGATTATTTGAAAA < 41bp 0.545497042269111 0.857446472071037 0.06338233 0.25631747 prediction 0.623898859603851 Functional Gain - CDC16 ENSG00000130177 CDS Human protein_coding chr13:115004881 chr13:115004884 nonsynonymous SNV 0.979 2 24 hm5C_associated_SNPs_101169 0 0 1 0 3 CDC16 chr13:115004825 3'AG 115004825 Downstream 60bp
chr13 115004884 115004884 1 + T G KIRC 115004881 + 115004861 115004901 41 CTTGACATGGAAGAGCCCATCAATAAAAGATTATTTGAAAA CTTGACATGGAAGAGCCCATCAAGAAAAGATTATTTGAAAA < 41bp 0.545497042269111 0.857446472071037 0.06338233 0.25631747 prediction 0.623898859603851 Functional Gain - CDC16 ENSG00000130177 CDS Human protein_coding chr13:115004881 chr13:115004884 nonsynonymous SNV 0.979 2 24 hm5C_associated_SNPs_101169 0 0 1 0 3 CDC16 chr13:115004965 5'GT 115004965 Upstream 82bp
chr13 49762718 49762718 1 + C A UCEC 49762714 + 49762694 49762734 41 TCTTTGTGATCGACTGAATCCAGGCTGTTTCTATCGTTTAC TCTTTGTGATCGACTGAATCCAGGATGTTTCTATCGTTTAC < 41bp 0.435263017121471 0.811920862487938 0.44597858 0.46357027 prediction 0.623841724975876 Functional Gain - FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49762714 chr13:49762718 synonymous SNV . 0 25 hm5C_associated_SNPs_101174 0 0 1 0 2 FNDC3A chr13:49762651 3'AG 49762651 Downstream 68bp
chr13 49762718 49762718 1 + C A UCEC 49762714 + 49762694 49762734 41 TCTTTGTGATCGACTGAATCCAGGCTGTTTCTATCGTTTAC TCTTTGTGATCGACTGAATCCAGGATGTTTCTATCGTTTAC < 41bp 0.435263017121471 0.811920862487938 0.44597858 0.46357027 prediction 0.623841724975876 Functional Gain - FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49762714 chr13:49762718 synonymous SNV . 0 25 hm5C_associated_SNPs_101174 0 0 1 0 2 FNDC3A chr13:49762769 5'GT 49762769 Upstream 52bp
chr6 17292055 17292055 1 + C A LUAD 17292051 + 17292031 17292071 41 GAGTGGTCATTCCACACGTCCAGCCGACAGCAGCTGCCGCC GAGTGGTCATTCCACACGTCCAGCAGACAGCAGCTGCCGCC < 41bp 0.570859723115666 0.882759847536896 0.24801731 0.36703247 prediction 0.62380024884246 Functional Gain - RBM24 ENSG00000112183 CDS Human protein_coding chr6:17292051 chr6:17292055 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_101175 0 0 0 4 1 RBM24 chr6:17291987 3'AG 17291987 Downstream 69bp
chr15 74335396 74335396 1 + C A ESCA 74335392 + 74335372 74335412 41 CTCCAGCTGGAAGGCCCCAGCACCCTCAGGGTCCTGGACGA CTCCAGCTGGAAGGCCCCAGCACCATCAGGGTCCTGGACGA < 41bp 0.454116683950977 0.811892796188542 0.07339218 0.06747183 prediction 0.623785592377084 Functional Gain - PML ENSG00000140464 CDS Human protein_coding chr15:74335392 chr15:74335396 nonsynonymous SNV 0.129 2 25 hm5C_associated_SNPs_101177 0 0 0 1 2 PML chr15:74335330 3'AG 74335330 Downstream 67bp
chr15 74335396 74335396 1 + C A ESCA 74335392 + 74335372 74335412 41 CTCCAGCTGGAAGGCCCCAGCACCCTCAGGGTCCTGGACGA CTCCAGCTGGAAGGCCCCAGCACCATCAGGGTCCTGGACGA < 41bp 0.454116683950977 0.811892796188542 0.07339218 0.06747183 prediction 0.623785592377084 Functional Gain - PML ENSG00000140464 CDS Human protein_coding chr15:74335392 chr15:74335396 nonsynonymous SNV 0.129 2 25 hm5C_associated_SNPs_101177 0 0 0 1 2 PML chr15:74335480 5'GT 74335480 Upstream 85bp
chr5 128320947 128320947 1 + T A LUAD 128320943 + 128320923 128320963 41 CAAAGAAAAACTGAGCACCTCACCTGATGAGCCCGTGCCAC CAAAGAAAAACTGAGCACCTCACCAGATGAGCCCGTGCCAC < 41bp 0.492415981368284 0.811885289831213 0.22411382 0.16890314 prediction 0.623770579662427 Functional Gain - SLC27A6 ENSG00000113396 CDS Human protein_coding chr5:128320943 chr5:128320947 synonymous SNV . 0 25 hm5C_associated_SNPs_101179 0 0 0 0 1 SLC27A6 chr5:128321029 5'GT 128321029 Upstream 83bp
chr9 133542151 133542151 1 + T G OV 133542149 + 133542129 133542169 41 CGCGTGATCGCCCCGGAGCACGTGGACATCTGCAAGAACAA CGCGTGATCGCCCCGGAGCACGGGGACATCTGCAAGAACAA < 41bp 0.528011067407408 0.839787191109205 0.09639129 0.5559268 prediction 0.623552247403595 Functional Gain - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133542149 chr9:133542151 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_101185 0 0 0 0 1 PRDM12 chr9:133542185 5'GT 133542185 Upstream 35bp
chr2 238436130 238436130 1 + C A rs577434782 238436126 + 238436106 238436146 41 GTGATGGCCTCCCACCATTCCAAGCGGAGAGGCCGGGCGTC GTGATGGCCTCCCACCATTCCAAGAGGAGAGGCCGGGCGTC < 41bp 0.432893885269728 0.811760267381614 0.8929866 0.8994929 prediction 0.623520534763228 Functional Gain - MLPH ENSG00000115648 CDS Human protein_coding chr2:238436126 chr2:238436130 synonymous SNV . 0 25 hm5C_associated_SNPs_101187 0 0 0 0 1 MLPH chr2:238436159 5'GT 238436159 Upstream 30bp
chr2 71801436 71801436 1 + C A rs141536854 71801432 + 71801412 71801452 41 GATGCCTTCCGCCGCCGCCGCTGGCGCCGTCGCATGGAGCC GATGCCTTCCGCCGCCGCCGCTGGAGCCGTCGCATGGAGCC < 41bp 0.516468335421586 0.828200799768249 0.53479296 0.44917506 prediction 0.623464928693327 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71801432 chr2:71801436 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_101190 0 0 0 0 1 DYSF chr2:71801501 5'GT 71801501 Upstream 66bp
chr19 36149504 36149504 1 + C A UCEC 36149500 + 36149480 36149520 41 CACTGTCTTTCCACAGGTCACAGACTGGGATGAGCAACGGG CACTGTCTTTCCACAGGTCACAGAATGGGATGAGCAACGGG < 41bp 0.441419541723487 0.811707273386568 0.05318767 0.16186196 prediction 0.623414546773135 Functional Gain - COX6B1 ENSG00000126267 CDS Human protein_coding chr19:36149500 chr19:36149504 nonsynonymous SNV 0.454 1 25 hm5C_associated_SNPs_101192 0 0 1 0 1 COX6B1 chr19:36149496 3'AG 36149496 Downstream 9bp
chr4 100208053 100208053 1 - G T LUAD 100208057 - 100208037 100208077 41 TGTGATTTTAGGCCATGAGGCAGCCGGCATCGTGGAGAGTG TGTGATTTTAGGCCATGAGGCAGCAGGCATCGTGGAGAGTG < 41bp 0.575817401814346 0.887519067762575 0.26874042 0.2903013 prediction 0.623403331896458 Functional Gain - ADH1A ENSG00000187758 CDS Human protein_coding chr4:100208057 chr4:100208053 synonymous SNV . 0 25 hm5C_associated_SNPs_101193 0 0 0 0 2 ADH1A chr4:100208007 5'GT 100208007 Upstream 47bp
chr4 100208053 100208053 1 - G T LUAD 100208057 - 100208037 100208077 41 TGTGATTTTAGGCCATGAGGCAGCCGGCATCGTGGAGAGTG TGTGATTTTAGGCCATGAGGCAGCAGGCATCGTGGAGAGTG < 41bp 0.575817401814346 0.887519067762575 0.26874042 0.2903013 prediction 0.623403331896458 Functional Gain - ADH1A ENSG00000187758 CDS Human protein_coding chr4:100208057 chr4:100208053 synonymous SNV . 0 25 hm5C_associated_SNPs_101193 0 0 0 0 2 ADH1A chr4:100208145 3'AG 100208145 Downstream 93bp
chr19 7743012 7743012 1 + C A LUSC 7743008 + 7742988 7743028 41 AGTCCCAGCCCAGTGCAGGCCGCCCTCAGACTCCACCCAGG AGTCCCAGCCCAGTGCAGGCCGCCATCAGACTCCACCCAGG < 41bp 0.586604977410323 0.898207265360077 0.019378066 0.23564792 prediction 0.62320457589951 Functional Gain - MCEMP1 ENSG00000183019 CDS Human protein_coding chr19:7743008 chr19:7743012 synonymous SNV . 0 25 hm5C_associated_SNPs_101195 0 0 0 0 1 MCEMP1 chr19:7742990 3'AG 7742990 Downstream 23bp
chr12 54922088 54922088 1 + C A SKCM 54922084 + 54922064 54922104 41 TGGGACCATCATCCTCTCCCCAGCCATGCAGGCCTTCGTCA TGGGACCATCATCCTCTCCCCAGCAATGCAGGCCTTCGTCA < 41bp 0.405694336427509 0.81152044707858 0.08805624 0.21304652 prediction 0.62304089415716 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54922084 chr12:54922088 synonymous SNV . 0 25 hm5C_associated_SNPs_101198 0 0 0 0 2 NCKAP1L chr12:54922031 3'AG 54922031 Downstream 58bp
chr12 54922088 54922088 1 + C A SKCM 54922084 + 54922064 54922104 41 TGGGACCATCATCCTCTCCCCAGCCATGCAGGCCTTCGTCA TGGGACCATCATCCTCTCCCCAGCAATGCAGGCCTTCGTCA < 41bp 0.405694336427509 0.81152044707858 0.08805624 0.21304652 prediction 0.62304089415716 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54922084 chr12:54922088 synonymous SNV . 0 25 hm5C_associated_SNPs_101198 0 0 0 0 2 NCKAP1L chr12:54922161 5'GT 54922161 Upstream 74bp
chr16 2035892 2035892 1 + C A SKCM 2035888 + 2035868 2035908 41 CTGTGCAGGAACCACCCAGACACCCGCACCCGGGCATGCTT CTGTGCAGGAACCACCCAGACACCAGCACCCGGGCATGCTT < 41bp 0.415589624408144 0.811513641683115 0.07866436 0.04891172 prediction 0.62302728336623 Functional Gain - GFER ENSG00000127554 CDS Human protein_coding chr16:2035888 chr16:2035892 nonsynonymous SNV 0.622 0 25 hm5C_associated_SNPs_101199 0 0 1 0 1 GFER chr16:2035867 3'AG 2035867 Downstream 26bp
chr17 33475407 33475407 1 + T A LUAD 33475403 + 33475383 33475423 41 AGCTGACCAAGGACAAGGCCCTGCTGGCCACGCTTTATCGG AGCTGACCAAGGACAAGGCCCTGCAGGCCACGCTTTATCGG < 41bp 0.512574373151004 0.823920433678872 0.12511912 0.21618938 prediction 0.622692121055737 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33475403 chr17:33475407 nonsynonymous SNV 0.679 0 25 hm5C_associated_SNPs_101204 0 0 0 0 1 UNC45B chr17:33475450 5'GT 33475450 Upstream 44bp
chr1 11771928 11771928 1 + C A LIHC 11771924 + 11771904 11771944 41 CCAGCAGGCACAGCCCAGGTCTGACGGGGAGGTGATGCCCA CCAGCAGGCACAGCCCAGGTCTGAAGGGGAGGTGATGCCCA < 41bp 0.405609886848602 0.811337422856341 0.4241532 0.75435865 prediction 0.622674845712683 Functional Gain - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11771924 chr1:11771928 nonsynonymous SNV 0.977 0 25 hm5C_associated_SNPs_101205 0 0 0 0 2 DRAXIN chr1:11771908 3'AG 11771908 Downstream 21bp
chr1 11771928 11771928 1 + C A LIHC 11771924 + 11771904 11771944 41 CCAGCAGGCACAGCCCAGGTCTGACGGGGAGGTGATGCCCA CCAGCAGGCACAGCCCAGGTCTGAAGGGGAGGTGATGCCCA < 41bp 0.405609886848602 0.811337422856341 0.4241532 0.75435865 prediction 0.622674845712683 Functional Gain - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11771924 chr1:11771928 nonsynonymous SNV 0.977 0 25 hm5C_associated_SNPs_101205 0 0 0 0 2 DRAXIN chr1:11772022 5'GT 11772022 Upstream 95bp
chr1 210591515 210591515 1 + T G LUAD 210591513 + 210591493 210591533 41 TTTAGATGCAGCAGCAGGAGCATGACTCCCTGAAGGCCAGC TTTAGATGCAGCAGCAGGAGCAGGACTCCCTGAAGGCCAGC < 41bp 0.507514833351834 0.818774025466447 0.20853704 0.8094368 prediction 0.622518384229225 Functional Gain - HHAT ENSG00000054392 CDS Human protein_coding chr1:210591513 chr1:210591515 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_101211 0 0 0 0 1 HHAT chr1:210591498 3'AG 210591498 Downstream 18bp
chr2 95541385 95541385 1 + C A SARC 95541381 + 95541361 95541401 41 ACAACGTGGCGGCACTGAAGCAGGCCATCAAGGACAAAGAG ACAACGTGGCGGCACTGAAGCAGGACATCAAGGACAAAGAG < 41bp 0.569117131578583 0.880347489723827 0.8493184 0.888103 prediction 0.622460716290488 Functional Gain - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95541381 chr2:95541385 nonsynonymous SNV 0.971 4 25 hm5C_associated_SNPs_101215 0 0 0 0 1 TEKT4 chr2:95541333 3'AG 95541333 Downstream 53bp
chr14 24843545 24843545 1 + C A LIHC 24843541 + 24843521 24843561 41 CTGCTCTGCAGCCCAGCGCTCAGCCCAGGAGCTGCCCCAGG CTGCTCTGCAGCCCAGCGCTCAGCACAGGAGCTGCCCCAGG < 41bp 0.47780142445949 0.811165032680322 0.24324802 0.21326697 prediction 0.622330065360645 Functional Gain - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24843541 chr14:24843545 synonymous SNV . 0 25 hm5C_associated_SNPs_101222 0 0 0 0 1 NFATC4 chr14:24843532 3'AG 24843532 Downstream 14bp
chr17 56277633 56277633 1 + C A UCEC 56277629 + 56277609 56277649 41 GGCCTCATGGCCACCCCTGCCAAGCTGAACCGTCAGGATGC GGCCTCATGGCCACCCCTGCCAAGATGAACCGTCAGGATGC < 41bp 0.579989692296883 0.891154610378849 0.3602885 0.45104924 prediction 0.622329836163932 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56277629 chr17:56277633 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_101223 0 0 0 0 1 EPX chr17:56277586 3'AG 56277586 Downstream 48bp
chr11 22248924 22248924 1 + T G SKCM 22248922 + 22248902 22248942 41 TTAGTTACCTATGCTGAAGTCTTGGGAATCAAAATGCCTAT TTAGTTACCTATGCTGAAGTCTGGGGAATCAAAATGCCTAT < 41bp 0.512976153575518 0.824103669550293 0.170567 0.55598223 prediction 0.622255031949549 Functional Gain - ANO5 ENSG00000171714 CDS Human protein_coding chr11:22248922 chr11:22248924 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_101225 0 0 1 0 1 ANO5 chr11:22248848 3'AG 22248848 Downstream 77bp
chr6 150267771 150267771 1 + C A THCA 150267767 + 150267747 150267787 41 TTCTTGATGGGCATGGACAGCACCCTGGAGCCAAGTGCAGG TTCTTGATGGGCATGGACAGCACCATGGAGCCAAGTGCAGG < 41bp 0.416640113861461 0.81110626045082 0.06276196 0.057591915 prediction 0.62221252090164 Functional Gain - ULBP2 ENSG00000131015 CDS Human protein_coding chr6:150267767 chr6:150267771 nonsynonymous SNV 0.005 3 25 hm5C_associated_SNPs_101226 0 0 0 0 1 ULBP2 chr6:150267789 5'GT 150267789 Upstream 19bp
chr5 73048945 73048945 1 + C A COAD 73048941 + 73048921 73048961 41 CTTGACGGCAGGAGCACTGCCTGCCTTGGATGAGGAGCTCG CTTGACGGCAGGAGCACTGCCTGCATTGGATGAGGAGCTCG < 41bp 0.419944799639917 0.811070056655304 0.010435641 0.13677678 prediction 0.622140113310608 Functional Gain - ARHGEF28 ENSG00000214944 CDS Human protein_coding chr5:73048941 chr5:73048945 synonymous SNV . 0 25 hm5C_associated_SNPs_101229 0 0 1 0 1 ARHGEF28 chr5:73049027 5'GT 73049027 Upstream 83bp
chr9 139694521 139694521 1 + T G rs4546744 139694519 + 139694499 139694539 41 ATGCACAACCTACTGATCCACCTGGTGCGGCGGCGCGGGCA ATGCACAACCTACTGATCCACCGGGTGCGGCGGCGCGGGCA < 41bp 0.46530889319528 0.811032578500971 0.17311502 0.62233704 prediction 0.622065157001941 Functional Gain - CCDC183 ENSG00000213213;ENSG00000272896 CDS Human other chr9:139694519 chr9:139694521 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_101232 0 0 0 0 1 CCDC183 chr9:139694454 3'AG 139694454 Downstream 68bp
chr19 41700485 41700485 1 + C A UCEC 41700481 + 41700461 41700501 41 TACGGACCGGTGTTCACCATCTACCTGGGACCGTGGCGGCC TACGGACCGGTGTTCACCATCTACATGGGACCGTGGCGGCC < 41bp 0.39693145732982 0.811017858576262 0.28044057 0.9215282 prediction 0.622035717152524 Functional Gain - CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41700481 chr19:41700485 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_101233 0 0 1 0 1 CYP2S1 chr19:41700449 3'AG 41700449 Downstream 37bp
chr1 11589683 11589683 1 + C A UCEC 11589679 + 11589659 11589699 41 GTATGCATGGCACCCCCTGGCTGCCTGCTTAGCTCCAGCCC GTATGCATGGCACCCCCTGGCTGCATGCTTAGCTCCAGCCC < 41bp 0.403495517315244 0.811006557189267 0.06428644 0.15610522 prediction 0.622013114378534 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11589679 chr1:11589683 nonsynonymous SNV 0.990 1 25 hm5C_associated_SNPs_101234 0 0 0 0 2 DISP3 chr1:11589613 3'AG 11589613 Downstream 71bp
chr1 11589683 11589683 1 + C A UCEC 11589679 + 11589659 11589699 41 GTATGCATGGCACCCCCTGGCTGCCTGCTTAGCTCCAGCCC GTATGCATGGCACCCCCTGGCTGCATGCTTAGCTCCAGCCC < 41bp 0.403495517315244 0.811006557189267 0.06428644 0.15610522 prediction 0.622013114378534 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11589679 chr1:11589683 nonsynonymous SNV 0.990 1 25 hm5C_associated_SNPs_101234 0 0 0 0 2 DISP3 chr1:11589743 5'GT 11589743 Upstream 61bp
chr7 154862792 154862792 1 - G T LUSC 154862796 - 154862776 154862816 41 GCGTACACGGAGGATGGTCGCCAGCACCAGCAGGTTCCAGG GCGTACACGGAGGATGGTCGCCAGAACCAGCAGGTTCCAGG < 41bp 0.554398520686706 0.865383370233488 0.31089067 0.8368635 prediction 0.621969699093565 Functional Gain - HTR5A ENSG00000157219;ENSG00000220575 CDS Human other chr7:154862796 chr7:154862792 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_101236 0 0 0 0 1 HTR5A chr7:154862744 5'GT 154862744 Upstream 49bp
chr5 10461362 10461362 1 + C A LUAD 10461358 + 10461338 10461378 41 GACGATCCGGAGGGCGGGCCCGCTCGCATCCCCTTCAAGAC GACGATCCGGAGGGCGGGCCCGCTAGCATCCCCTTCAAGAC < 41bp 0.414875259056068 0.810965099437814 0.10615769 0.31466472 prediction 0.621930198875627 Functional Gain - ROPN1L ENSG00000145491 CDS Human protein_coding chr5:10461358 chr5:10461362 nonsynonymous SNV 0.865 4 25 hm5C_associated_SNPs_101237 0 0 0 0 1 ROPN1L chr5:10461296 3'AG 10461296 Downstream 67bp
chr3 9952559 9952559 1 + C A rs115354176 9952555 + 9952535 9952575 41 TGCCACCTGCCCAGATGGCTCGGACTTCTGGAAGTCAGTGC TGCCACCTGCCCAGATGGCTCGGAATTCTGGAAGTCAGTGC < 41bp 0.448477528338544 0.810907640373076 0.28948057 0.38230947 prediction 0.621815280746152 Functional Gain - IL17RE ENSG00000163701 CDS Human protein_coding chr3:9952555 chr3:9952559 nonsynonymous SNV 0.988 1 25 hm5C_associated_SNPs_101241 0 0 1 1 1 IL17RE chr3:9952549 3'AG 9952549 Downstream 11bp
chr19 7589988 7589988 1 + C A LUSC 7589984 + 7589964 7590004 41 TGAGTCCCTGCGACAAGTTTCGAGCCAAGGGCCGCAAGCCC TGAGTCCCTGCGACAAGTTTCGAGACAAGGGCCGCAAGCCC < 41bp 0.51353206936737 0.824346129790097 0.17181578 0.39760655 prediction 0.621628120845454 Functional Gain - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7589984 chr19:7589988 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101245 0 0 0 0 1 MCOLN1 chr19:7590052 5'GT 7590052 Upstream 65bp
chr12 56110759 56110759 1 + C A UCEC 56110755 + 56110735 56110775 41 CTATCACTGCAGCGACCTGCCTGACAGAAGCTTTGGTGGAT CTATCACTGCAGCGACCTGCCTGAAAGAAGCTTTGGTGGAT < 41bp 0.406964520656129 0.810752062216339 0.1622796 0.3106805 prediction 0.621504124432679 Functional Gain - BLOC1S1 ENSG00000135441;ENSG00000258311 CDS Human other chr12:56110755 chr12:56110759 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_101248 0 0 1 0 2 BLOC1S1 chr12:56110717 3'AG 56110717 Downstream 43bp
chr12 56110759 56110759 1 + C A UCEC 56110755 + 56110735 56110775 41 CTATCACTGCAGCGACCTGCCTGACAGAAGCTTTGGTGGAT CTATCACTGCAGCGACCTGCCTGAAAGAAGCTTTGGTGGAT < 41bp 0.406964520656129 0.810752062216339 0.1622796 0.3106805 prediction 0.621504124432679 Functional Gain - BLOC1S1 ENSG00000135441;ENSG00000258311 CDS Human other chr12:56110755 chr12:56110759 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_101248 0 0 1 0 2 BLOC1S1 chr12:56110789 5'GT 56110789 Upstream 31bp
chr17 30687944 30687944 1 + T G SKCM 30687941 + 30687921 30687961 41 ATTAATGCCAGGTGTTCCTCCTCTGATGCCAGGAATGCCAC ATTAATGCCAGGTGTTCCTCCTCGGATGCCAGGAATGCCAC < 41bp 0.556533882670439 0.867250517207044 0.0927622 0.23171723 prediction 0.621433269073209 Functional Gain - ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30687941 chr17:30687944 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_101249 0 0 1 1 2 ZNF207 chr17:30687911 3'AG 30687911 Downstream 34bp
chr17 30687944 30687944 1 + T G SKCM 30687941 + 30687921 30687961 41 ATTAATGCCAGGTGTTCCTCCTCTGATGCCAGGAATGCCAC ATTAATGCCAGGTGTTCCTCCTCGGATGCCAGGAATGCCAC < 41bp 0.556533882670439 0.867250517207044 0.0927622 0.23171723 prediction 0.621433269073209 Functional Gain - ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30687941 chr17:30687944 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_101249 0 0 1 1 2 ZNF207 chr17:30687986 5'GT 30687986 Upstream 43bp
chr6 26459970 26459970 1 + T G UCEC 26459968 + 26459948 26459988 41 GTGGCCCTGGTCATACACAACATCACAGCCCAGGAAAACGG GTGGCCCTGGTCATACACAACAGCACAGCCCAGGAAAACGG < 41bp 0.517333615201692 0.827971193982825 0.07637861 0.23914647 prediction 0.621275157562267 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26459968 chr6:26459970 nonsynonymous SNV 0.087 1 23 hm5C_associated_SNPs_101251 0 0 1 0 1 BTN2A1 chr6:26460056 5'GT 26460056 Upstream 87bp
chr21 41300978 41300978 1 + T G SKCM 41300975 + 41300955 41300995 41 ACCAGAGACAGAACGTGCAGCGGTGGCCATTCAGTCTCAGT ACCAGAGACAGAACGTGCAGCGGGGGCCATTCAGTCTCAGT < 41bp 0.446678267202831 0.810611851792693 0.29045457 0.4906771 prediction 0.621223703585386 Functional Gain - PCP4 ENSG00000183036 CDS Human protein_coding chr21:41300975 chr21:41300978 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_101253 0 0 0 0 1 PCP4 chr21:41300909 3'AG 41300909 Downstream 70bp
chr2 234628268 234628268 1 + C A KIRC 234628264 + 234628244 234628284 41 GACTTTGTGATGGACTACCCCAGGCCGATCATGCCCAACAT GACTTTGTGATGGACTACCCCAGGACGATCATGCCCAACAT < 41bp 0.445250780649517 0.810548098092059 0.8045887 0.84050536 prediction 0.621096196184117 Functional Gain - UGT1A4 ENSG00000244474 CDS Human protein_coding chr2:234628264 chr2:234628268 nonsynonymous SNV 0.934 3 25 hm5C_associated_SNPs_101255 0 0 0 0 1 UGT1A4 chr2:234628333 5'GT 234628333 Upstream 66bp
chr5 169461447 169461447 1 + T G STAD 169461444 + 169461424 169461464 41 GCACCCAACCATTGCCAAGTCGGTGGAGAACTTCGTGAACC GCACCCAACCATTGCCAAGTCGGGGGAGAACTTCGTGAACC < 41bp 0.536575128034435 0.847096306852206 0.34910807 0.9004563 prediction 0.621042357635541 Functional Gain - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169461444 chr5:169461447 nonsynonymous SNV 0.973 1 24 hm5C_associated_SNPs_101257 0 0 0 0 1 DOCK2 chr5:169461403 3'AG 169461403 Downstream 45bp
chr12 113704142 113704142 1 + C A rs117386743 113704138 + 113704118 113704158 41 TGTGCGAGGCCCCCGCCGTCCCCGCACTCCGGCTTGGCATC TGTGCGAGGCCCCCGCCGTCCCCGAACTCCGGCTTGGCATC < 41bp 0.412456626646178 0.810461807712541 0.070276916 0.22167444 prediction 0.620923615425082 Functional Gain - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113704138 chr12:113704142 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_101259 0 0 0 0 1 TPCN1 chr12:113704161 5'GT 113704161 Upstream 20bp
chrX 70823472 70823472 1 + C A LUAD 70823468 + 70823448 70823488 41 GGAGTGTTGTCATGTGAAGCCTGCCATCCAGGAACCTCCAA GGAGTGTTGTCATGTGAAGCCTGCAATCCAGGAACCTCCAA < 41bp 0.415101167103412 0.810456634621706 0.010054588 0.07236415 prediction 0.620913269243412 Functional Gain - GCNA ENSG00000147174 CDS Human protein_coding chrX:70823468 chrX:70823472 synonymous SNV . 0 25 hm5C_associated_SNPs_101260 0 0 0 0 1 GCNA chrX:70823438 3'AG 70823438 Downstream 35bp
chr9 138466899 138466899 1 + T G rs184324078 138466896 + 138466876 138466916 41 GGCTGAGCCTGCTTTCCATGCTGTGAGCCCAGGGGACCCAG GGCTGAGCCTGCTTTCCATGCTGGGAGCCCAGGGGACCCAG < 41bp 0.541881389522421 0.852314307899806 0.16681176 0.8133709 prediction 0.620865836754771 Functional Gain - LINC01502 ENSG00000237339 ncRNA_exonic Human lincRNA chr9:138466896 chr9:138466899 . . 0 24 hm5C_associated_SNPs_101262 0 0 0 0 1 LINC01502 chr9:138466940 5'GT 138466940 Upstream 42bp
chr2 206605378 206605378 1 + C A rs139711818 206605374 + 206605354 206605394 41 CTCCGGCTGGAGCTCTTCGGCTGCCGGGTCACAGGTGAGGT CTCCGGCTGGAGCTCTTCGGCTGCAGGGTCACAGGTGAGGT < 41bp 0.410185735210917 0.810413579660226 0.23039421 0.24586931 prediction 0.620827159320452 Functional Gain - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206605374 chr2:206605378 synonymous SNV . 0 25 hm5C_associated_SNPs_101263 0 0 0 0 1 NRP2 chr2:206605387 5'GT 206605387 Upstream 10bp
chr22 40365518 40365518 1 + T G LUSC 40365515 + 40365495 40365535 41 GCATCGGAGACACACAGACCCAGTGCAGCTCCAGGCGGCAG GCATCGGAGACACACAGACCCAGGGCAGCTCCAGGCGGCAG < 41bp 0.57143072143286 0.881835096786689 0.7979653 0.90946203 prediction 0.620808750707659 Functional Gain - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40365515 chr22:40365518 nonsynonymous SNV 0.967 0 24 hm5C_associated_SNPs_101264 0 0 1 0 1 GRAP2 chr22:40365537 5'GT 40365537 Upstream 20bp
chr6 31675283 31675283 1 + C A rs17200983 31675279 + 31675259 31675299 41 CCTTGGGGGAGGCAGTAGAGCTGCCATGTCCCTCACCACCT CCTTGGGGGAGGCAGTAGAGCTGCAATGTCCCTCACCACCT < 41bp 0.568604220828609 0.878939951421544 0.34797806 0.3967422 prediction 0.620671461185869 Functional Gain - LY6G6F ENSG00000204424;ENSG00000250641 CDS Human other chr6:31675279 chr6:31675283 nonsynonymous SNV 0.771 3 25 hm5C_associated_SNPs_101268 0 0 0 0 1 LY6G6F chr6:31675235 3'AG 31675235 Downstream 49bp
chrX 128873217 128873217 1 + C A LUSC 128873213 + 128873193 128873233 41 GCCCGGGCTCACTGGGGCTGCTGCCCCTGGCTGGTCCTCCT GCCCGGGCTCACTGGGGCTGCTGCACCTGGCTGGTCCTCCT < 41bp 0.418894413476581 0.810303158849863 0.55278784 0.82605726 prediction 0.620606317699726 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128873213 chrX:128873217 nonsynonymous SNV 0.993 0 25 hm5C_associated_SNPs_101270 0 0 0 0 1 XPNPEP2 chrX:128873238 5'GT 128873238 Upstream 22bp
chr19 43920610 43920610 1 + C A THCA 43920606 + 43920586 43920626 41 AATTGTCCAGCACTCTTCACCTCCCGGCCTGATCGTGACCT AATTGTCCAGCACTCTTCACCTCCAGGCCTGATCGTGACCT < 41bp 0.407065439085946 0.810238539645419 0.062153757 0.8900791 prediction 0.620477079290839 Functional Gain - TEX101 ENSG00000131126 CDS Human protein_coding chr19:43920606 chr19:43920610 synonymous SNV . 0 25 hm5C_associated_SNPs_101274 0 0 0 0 2 TEX101 chr19:43920525 3'AG 43920525 Downstream 86bp
chr19 43920610 43920610 1 + C A THCA 43920606 + 43920586 43920626 41 AATTGTCCAGCACTCTTCACCTCCCGGCCTGATCGTGACCT AATTGTCCAGCACTCTTCACCTCCAGGCCTGATCGTGACCT < 41bp 0.407065439085946 0.810238539645419 0.062153757 0.8900791 prediction 0.620477079290839 Functional Gain - TEX101 ENSG00000131126 CDS Human protein_coding chr19:43920606 chr19:43920610 synonymous SNV . 0 25 hm5C_associated_SNPs_101274 0 0 0 0 2 TEX101 chr19:43920707 5'GT 43920707 Upstream 98bp
chr13 21714807 21714807 1 + T G KIRC 21714804 + 21714784 21714824 41 TAAGAAGGAGCCAGAGAAACCGATCGACCGCGAGAAGGTGA TAAGAAGGAGCCAGAGAAACCGAGCGACCGCGAGAAGGTGA < 41bp 0.550497339706397 0.860703726829086 0.5789857 0.8738282 prediction 0.620412774245377 Functional Gain - SAP18 ENSG00000150459 CDS Human protein_coding chr13:21714804 chr13:21714807 nonsynonymous SNV 0.162 2 24 hm5C_associated_SNPs_101276 0 0 1 0 1 SAP18 chr13:21714820 5'GT 21714820 Upstream 14bp
chr11 119252601 119252601 1 + C A rs112950413 119252597 + 119252577 119252617 41 ACAGAGGTGGACTGGAATGTCACACGACGGGGCAGCTGGAA ACAGAGGTGGACTGGAATGTCACAAGACGGGGCAGCTGGAA < 41bp 0.459411622753279 0.8101996499962 0.1384474 0.20220199 prediction 0.620399299992399 Functional Gain - USP2-AS1 ENSG00000245248 ncRNA_exonic Human antisense chr11:119252597 chr11:119252601 . . 0 25 hm5C_associated_SNPs_101277 0 0 1 0 1 USP2-AS1 chr11:119252618 5'GT 119252618 Upstream 18bp
chr19 50476824 50476824 1 + C A rs62115166 50476820 + 50476800 50476840 41 GAGCGGCCGTGTTTCCTCTGCAGGCTTTGCATGGTCTGTCC GAGCGGCCGTGTTTCCTCTGCAGGATTTGCATGGTCTGTCC < 41bp 0.49673796187167 0.81019224878288 0.9040764 0.9239174 prediction 0.620384497565761 Functional Gain - SIGLEC16 ENSG00000161643 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:50476820 chr19:50476824 . . 0 25 hm5C_associated_SNPs_101278 0 0 0 0 1 SIGLEC16 chr19:50476752 3'AG 50476752 Downstream 73bp
chr22 50961497 50961497 1 + C A LIHC 50961493 + 50961473 50961513 41 ACCTATGGGGACCAGCTGGTCTCACGGTTCCCCCAGCTCAA ACCTATGGGGACCAGCTGGTCTCAAGGTTCCCCCAGCTCAA < 41bp 0.405561634586554 0.810150654907493 0.11159253 0.054417133 prediction 0.620301309814985 Functional Gain - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50961493 chr22:50961497 synonymous SNV . 0 25 hm5C_associated_SNPs_101279 0 0 1 0 2 NCAPH2 chr22:50961446 3'AG 50961446 Downstream 52bp
chr22 50961497 50961497 1 + C A LIHC 50961493 + 50961473 50961513 41 ACCTATGGGGACCAGCTGGTCTCACGGTTCCCCCAGCTCAA ACCTATGGGGACCAGCTGGTCTCAAGGTTCCCCCAGCTCAA < 41bp 0.405561634586554 0.810150654907493 0.11159253 0.054417133 prediction 0.620301309814985 Functional Gain - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50961493 chr22:50961497 synonymous SNV . 0 25 hm5C_associated_SNPs_101279 0 0 1 0 2 NCAPH2 chr22:50961595 5'GT 50961595 Upstream 99bp
chr12 21331589 21331589 1 + C A LUAD 21331585 + 21331565 21331605 41 GCTTCGTGGAATAGGGGAGACTCCCATAGTACCATTGGGGC GCTTCGTGGAATAGGGGAGACTCCAATAGTACCATTGGGGC < 41bp 0.397768669978491 0.810150039899327 0.21525583 0.9686908 prediction 0.620300079798655 Functional Gain - SLCO1B1 ENSG00000134538 CDS Human protein_coding chr12:21331585 chr12:21331589 synonymous SNV . 0 25 hm5C_associated_SNPs_101280 0 0 0 0 2 SLCO1B1 chr12:21331510 3'AG 21331510 Downstream 80bp
chr12 21331589 21331589 1 + C A LUAD 21331585 + 21331565 21331605 41 GCTTCGTGGAATAGGGGAGACTCCCATAGTACCATTGGGGC GCTTCGTGGAATAGGGGAGACTCCAATAGTACCATTGGGGC < 41bp 0.397768669978491 0.810150039899327 0.21525583 0.9686908 prediction 0.620300079798655 Functional Gain - SLCO1B1 ENSG00000134538 CDS Human protein_coding chr12:21331585 chr12:21331589 synonymous SNV . 0 25 hm5C_associated_SNPs_101280 0 0 0 0 2 SLCO1B1 chr12:21331656 5'GT 21331656 Upstream 68bp
chr7 74197927 74197927 1 + C A STAD 74197923 + 74197903 74197943 41 TGGATCCCAGCGTCCTTCCTCGAGCCCCTGGACAGTCCTGA TGGATCCCAGCGTCCTTCCTCGAGACCCTGGACAGTCCTGA < 41bp 0.419930474929203 0.810097883032415 0.87653637 0.8777876 prediction 0.62019576606483 Functional Gain - NCF1 ENSG00000158517 CDS Human protein_coding chr7:74197923 chr7:74197927 nonsynonymous SNV 0.791 4 25 hm5C_associated_SNPs_101282 0 0 0 0 1 NCF1 chr7:74197868 3'AG 74197868 Downstream 60bp
chr20 30602788 30602788 1 + C A LUAD 30602784 + 30602764 30602804 41 TGTAGGAGCAGCGTGAGCCGCCGGCCCCTGCACTCGATGCC TGTAGGAGCAGCGTGAGCCGCCGGACCCTGCACTCGATGCC < 41bp 0.428718250435665 0.810076702511208 0.30529177 0.53888893 prediction 0.620153405022417 Functional Gain - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30602784 chr20:30602788 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_101283 0 0 0 0 2 CCM2L chr20:30602707 3'AG 30602707 Downstream 82bp
chr20 30602788 30602788 1 + C A LUAD 30602784 + 30602764 30602804 41 TGTAGGAGCAGCGTGAGCCGCCGGCCCCTGCACTCGATGCC TGTAGGAGCAGCGTGAGCCGCCGGACCCTGCACTCGATGCC < 41bp 0.428718250435665 0.810076702511208 0.30529177 0.53888893 prediction 0.620153405022417 Functional Gain - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30602784 chr20:30602788 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_101283 0 0 0 0 2 CCM2L chr20:30602874 5'GT 30602874 Upstream 87bp
chr20 42979345 42979345 1 + C A LUSC 42979341 + 42979321 42979361 41 CCCGTACAAGATGGGAAAGCCGTGCTCCTCCTGTCCCCCCA CCCGTACAAGATGGGAAAGCCGTGATCCTCCTGTCCCCCCA < 41bp 0.56688577674939 0.876920092912959 0.27095973 0.3633422 prediction 0.620068632327136 Functional Gain - R3HDML ENSG00000101074 CDS Human protein_coding chr20:42979341 chr20:42979345 stopgain 0.010 1 25 hm5C_associated_SNPs_101284 0 0 0 0 1 R3HDML chr20:42979300 3'AG 42979300 Downstream 46bp
chr1 1221560 1221560 1 + T G rs577048886 1221557 + 1221537 1221577 41 TGCTGGCAGCTGGGGCTCCTCTTTGAGCGTCACTGGCACCG TGCTGGCAGCTGGGGCTCCTCTTGGAGCGTCACTGGCACCG < 41bp 0.432411923944507 0.810033303189977 0.19558272 0.366647 prediction 0.620066606379955 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1221557 chr1:1221560 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_101285 0 0 0 0 1 SCNN1D chr1:1221658 5'GT 1221658 Upstream 99bp
chr19 55592800 55592800 1 + C A LIHC 55592796 + 55592776 55592816 41 GACCTCGAGCAACGCTGACTCGGCCTCCCCGGACCTGGGTC GACCTCGAGCAACGCTGACTCGGCATCCCCGGACCTGGGTC < 41bp 0.57739612833104 0.887370084288803 0.8908334 0.8955034 prediction 0.619947911915525 Functional Gain - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55592796 chr19:55592800 synonymous SNV . 0 25 hm5C_associated_SNPs_101287 0 0 0 0 1 EPS8L1 chr19:55592860 5'GT 55592860 Upstream 61bp
chr21 38095410 38095410 1 + C A LIHC 38095406 + 38095386 38095426 41 TGTCTTGGCGAAAAGGAACGCGGGCCTGACCTGCAGCGGAT TGTCTTGGCGAAAAGGAACGCGGGACTGACCTGCAGCGGAT < 41bp 0.578326635581048 0.888264723856055 0.8933023 0.8992684 prediction 0.619876176550014 Functional Gain - SIM2 ENSG00000159263 CDS Human protein_coding chr21:38095406 chr21:38095410 synonymous SNV . 0 25 hm5C_associated_SNPs_101289 0 0 1 0 1 SIM2 chr21:38095431 5'GT 38095431 Upstream 22bp
chr12 67706402 67706402 1 + T G ESCA 67706399 + 67706379 67706419 41 CTTACAGGTAAAGGCAAACTCAGTAAAGCAGGAGTTTGAAA CTTACAGGTAAAGGCAAACTCAGGAAAGCAGGAGTTTGAAA < 41bp 0.467624868087087 0.809930431048675 0.14409387 0.883469 prediction 0.619860862097351 Functional Gain - CAND1 ENSG00000111530 CDS Human protein_coding chr12:67706399 chr12:67706402 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_101290 0 0 1 0 1 CAND1 chr12:67706386 3'AG 67706386 Downstream 17bp
chr19 15164574 15164574 1 + C A CESC 15164570 + 15164550 15164590 41 CAGGAAGAGCTGGAAAAATTCCAGCAGGCCATCGATTCCCG CAGGAAGAGCTGGAAAAATTCCAGAAGGCCATCGATTCCCG < 41bp 0.433423796406525 0.809911612411878 0.23617148 0.40838745 prediction 0.619823224823755 Functional Gain - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15164570 chr19:15164574 nonsynonymous SNV 0.890 0 25 hm5C_associated_SNPs_101292 0 0 0 0 1 CASP14 chr19:15164544 3'AG 15164544 Downstream 31bp
chr6 106554881 106554881 1 + C A LUAD 106554877 + 106554857 106554897 41 ATACCAATGCAAGGTGTGCCCTGCCAAGTTCACCCAGTTTG ATACCAATGCAAGGTGTGCCCTGCAAAGTTCACCCAGTTTG < 41bp 0.414442425227821 0.809910864999842 0.013703197 0.064395726 prediction 0.619821729999684 Functional Gain - PRDM1 ENSG00000057657 CDS Human protein_coding chr6:106554877 chr6:106554881 synonymous SNV . 0 25 hm5C_associated_SNPs_101293 0 0 0 0 1 PRDM1 chr6:106554786 3'AG 106554786 Downstream 96bp
chr6 348192 348192 1 + T G COAD 348190 + 348170 348210 41 TGGGAGGATGCCCTGCACACCGTGCGTGCTGGGAGATCCTG TGGGAGGATGCCCTGCACACCGGGCGTGCTGGGAGATCCTG < 41bp 0.5247916460045 0.834650980206648 0.07505882 0.6969099 prediction 0.619718668404297 Functional Gain - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348190 chr6:348192 nonsynonymous SNV 0.806 5 23 hm5C_associated_SNPs_101296 0 0 1 0 2 DUSP22 chr6:348103 3'AG 348103 Downstream 90bp
chr6 348192 348192 1 + T G COAD 348190 + 348170 348210 41 TGGGAGGATGCCCTGCACACCGTGCGTGCTGGGAGATCCTG TGGGAGGATGCCCTGCACACCGGGCGTGCTGGGAGATCCTG < 41bp 0.5247916460045 0.834650980206648 0.07505882 0.6969099 prediction 0.619718668404297 Functional Gain - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348190 chr6:348192 nonsynonymous SNV 0.806 5 23 hm5C_associated_SNPs_101296 0 0 1 0 2 DUSP22 chr6:348274 5'GT 348274 Upstream 83bp
chr11 2411684 2411684 1 + C A BLCA 2411680 + 2411660 2411700 41 CTGGGTGTGGCCCTGTGGCTCCGCCATGACCCGCAGACCAC CTGGGTGTGGCCCTGTGGCTCCGCAATGACCCGCAGACCAC < 41bp 0.419024329079365 0.809842146740937 0.2672401 0.12030923 prediction 0.619684293481874 Functional Gain - CD81 ENSG00000110651 CDS Human protein_coding chr11:2411680 chr11:2411684 nonsynonymous SNV 0.960 2 25 hm5C_associated_SNPs_101299 0 0 1 0 2 CD81 chr11:2411642 3'AG 2411642 Downstream 43bp
chr11 2411684 2411684 1 + C A BLCA 2411680 + 2411660 2411700 41 CTGGGTGTGGCCCTGTGGCTCCGCCATGACCCGCAGACCAC CTGGGTGTGGCCCTGTGGCTCCGCAATGACCCGCAGACCAC < 41bp 0.419024329079365 0.809842146740937 0.2672401 0.12030923 prediction 0.619684293481874 Functional Gain - CD81 ENSG00000110651 CDS Human protein_coding chr11:2411680 chr11:2411684 nonsynonymous SNV 0.960 2 25 hm5C_associated_SNPs_101299 0 0 1 0 2 CD81 chr11:2411756 5'GT 2411756 Upstream 73bp
chr5 5303416 5303416 1 + C A rs77172736 5303412 + 5303392 5303432 41 GGAACTGGAGTGCCTGCAGTCGGACGTGTGGCGGGGGTGCC GGAACTGGAGTGCCTGCAGTCGGAAGTGTGGCGGGGGTGCC < 41bp 0.571783982579717 0.881617354962352 0.90583974 0.90636265 prediction 0.61966674476527 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5303412 chr5:5303416 nonsynonymous SNV 0.066 4 25 hm5C_associated_SNPs_101301 0 0 0 0 1 ADAMTS16 chr5:5303381 3'AG 5303381 Downstream 36bp
chr3 148563395 148563395 1 + T G OV 148563392 + 148563372 148563412 41 TACTCATATGCTTACAAACTCGGTGAGAACAATGCTGAGTT TACTCATATGCTTACAAACTCGGGGAGAACAATGCTGAGTT < 41bp 0.45136609800849 0.809806353317822 0.4099565 0.92423594 prediction 0.619612706635644 Functional Gain - CPB1 ENSG00000153002 CDS Human protein_coding chr3:148563392 chr3:148563395 synonymous SNV . 0 24 hm5C_associated_SNPs_101303 0 0 0 0 1 CPB1 chr3:148563413 5'GT 148563413 Upstream 19bp
chr19 15769359 15769359 1 + C A rs61734306 15769355 + 15769335 15769375 41 TCACAACCCAGCCGTGTGGCCGGACCCTGAGGTGCGGGCCC TCACAACCCAGCCGTGTGGCCGGAACCTGAGGTGCGGGCCC < 41bp 0.420928899211034 0.809802628999279 0.42863497 0.88744223 prediction 0.619605257998559 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15769355 chr19:15769359 nonsynonymous SNV 0.735 2 25 hm5C_associated_SNPs_101304 0 0 1 0 2 CYP4F3 chr19:15769301 3'AG 15769301 Downstream 59bp
chr19 15769359 15769359 1 + C A rs61734306 15769355 + 15769335 15769375 41 TCACAACCCAGCCGTGTGGCCGGACCCTGAGGTGCGGGCCC TCACAACCCAGCCGTGTGGCCGGAACCTGAGGTGCGGGCCC < 41bp 0.420928899211034 0.809802628999279 0.42863497 0.88744223 prediction 0.619605257998559 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15769355 chr19:15769359 nonsynonymous SNV 0.735 2 25 hm5C_associated_SNPs_101304 0 0 1 0 2 CYP4F3 chr19:15769365 5'GT 15769365 Upstream 7bp
chr14 24642159 24642159 1 + C A LUSC 24642155 + 24642135 24642175 41 ACGAGTGCAACCCCCGCAGCCCGGCCTGCCGCGGCCCCGCT ACGAGTGCAACCCCCGCAGCCCGGACTGCCGCGGCCCCGCT < 41bp 0.420691077096545 0.809728336918449 0.14768073 0.21356311 prediction 0.619456673836899 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24642155 chr14:24642159 synonymous SNV . 0 25 hm5C_associated_SNPs_101309 0 0 0 0 2 REC8 chr14:24642108 3'AG 24642108 Downstream 52bp
chr14 24642159 24642159 1 + C A LUSC 24642155 + 24642135 24642175 41 ACGAGTGCAACCCCCGCAGCCCGGCCTGCCGCGGCCCCGCT ACGAGTGCAACCCCCGCAGCCCGGACTGCCGCGGCCCCGCT < 41bp 0.420691077096545 0.809728336918449 0.14768073 0.21356311 prediction 0.619456673836899 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24642155 chr14:24642159 synonymous SNV . 0 25 hm5C_associated_SNPs_101309 0 0 0 0 2 REC8 chr14:24642250 5'GT 24642250 Upstream 92bp
chr16 67650732 67650732 1 + C A BLCA 67650728 + 67650708 67650748 41 TTCGGCATCGTCGTTACAAACACACCCACGAGAAGCCATTC TTCGGCATCGTCGTTACAAACACAACCACGAGAAGCCATTC < 41bp 0.397678069035049 0.809704191454639 0.048973203 0.056459397 prediction 0.619408382909278 Functional Gain - CTCF ENSG00000102974 CDS Human protein_coding chr16:67650728 chr16:67650732 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_101311 0 0 1 0 2 CTCF chr16:67650648 3'AG 67650648 Downstream 85bp
chr16 67650732 67650732 1 + C A BLCA 67650728 + 67650708 67650748 41 TTCGGCATCGTCGTTACAAACACACCCACGAGAAGCCATTC TTCGGCATCGTCGTTACAAACACAACCACGAGAAGCCATTC < 41bp 0.397678069035049 0.809704191454639 0.048973203 0.056459397 prediction 0.619408382909278 Functional Gain - CTCF ENSG00000102974 CDS Human protein_coding chr16:67650728 chr16:67650732 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_101311 0 0 1 0 2 CTCF chr16:67650781 5'GT 67650781 Upstream 50bp
chr17 73512884 73512884 1 + T G rs8079373 73512882 + 73512862 73512902 41 AGAAGCTGCCCCAGCGCTCGCATGGCCCCAAGGACTTTCTG AGAAGCTGCCCCAGCGCTCGCAGGGCCCCAAGGACTTTCTG < 41bp 0.536289166086667 0.84596534766462 0.51866114 0.9220904 prediction 0.619352363155905 Functional Gain - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73512882 chr17:73512884 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_101313 2 0 1 0 1 TSEN54 chr17:73512827 3'AG 73512827 Downstream 58bp
chr4 4864494 4864494 1 + T G OV 4864492 + 4864472 4864512 41 AACCGTAAGCCGCGGACGCCCTTCACCACCGCGCAGCTGCT AACCGTAAGCCGCGGACGCCCTGCACCACCGCGCAGCTGCT < 41bp 0.503797631401398 0.813467840447461 0.15876788 0.19604748 prediction 0.619340418092127 Functional Gain - MSX1 ENSG00000163132 CDS Human protein_coding chr4:4864492 chr4:4864494 nonsynonymous SNV 0.918 5 23 hm5C_associated_SNPs_101314 0 0 0 0 1 MSX1 chr4:4864428 3'AG 4864428 Downstream 67bp
chr16 57787007 57787007 1 + C A LUSC 57787003 + 57786983 57787023 41 CTGCAGATAGGTGTGGCCTTCTCCCAGAGCAACGTCTCCTC CTGCAGATAGGTGTGGCCTTCTCCAAGAGCAACGTCTCCTC < 41bp 0.599891483169596 0.909534541743135 0.23199618 0.9655903 prediction 0.61928611714708 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57787003 chr16:57787007 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_101319 0 0 1 0 1 KATNB1 chr16:57786989 3'AG 57786989 Downstream 19bp
chr1 20669015 20669015 1 + C A UCEC 20669011 + 20668991 20669031 41 CCCTCTCTGCTGCCCCAAGGCTGCCAGCCCTTCCTGCCCTG CCCTCTCTGCTGCCCCAAGGCTGCAAGCCCTTCCTGCCCTG < 41bp 0.591022261520677 0.900663490167641 0.11725366 0.20547846 prediction 0.619282457293927 Functional Gain - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20669011 chr1:20669015 nonsynonymous SNV 0.947 0 25 hm5C_associated_SNPs_101320 0 0 0 0 2 VWA5B1 chr1:20668925 3'AG 20668925 Downstream 91bp
chr1 20669015 20669015 1 + C A UCEC 20669011 + 20668991 20669031 41 CCCTCTCTGCTGCCCCAAGGCTGCCAGCCCTTCCTGCCCTG CCCTCTCTGCTGCCCCAAGGCTGCAAGCCCTTCCTGCCCTG < 41bp 0.591022261520677 0.900663490167641 0.11725366 0.20547846 prediction 0.619282457293927 Functional Gain - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20669011 chr1:20669015 nonsynonymous SNV 0.947 0 25 hm5C_associated_SNPs_101320 0 0 0 0 2 VWA5B1 chr1:20669102 5'GT 20669102 Upstream 88bp
chr18 59931346 59931346 1 + C A OV 59931342 + 59931322 59931362 41 GCTAGAACAAGAGGGTACAACAGGCTGGGAGAGTTTACTGT GCTAGAACAAGAGGGTACAACAGGATGGGAGAGTTTACTGT < 41bp 0.580995128306712 0.890614707309466 0.81427455 0.8615193 prediction 0.619239158005507 Functional Gain - KIAA1468 ENSG00000134444 CDS Human protein_coding chr18:59931342 chr18:59931346 synonymous SNV . 0 25 hm5C_associated_SNPs_101322 0 0 1 0 1 KIAA1468 chr18:59931378 5'GT 59931378 Upstream 33bp
chr5 63871662 63871662 1 + T A READ 63871658 + 63871638 63871678 41 CTTTACATCCAGCTGCAGTGCTGCTTAGAAATGTATACCAC CTTTACATCCAGCTGCAGTGCTGCATAGAAATGTATACCAC < 41bp 0.522768778723663 0.832338787221991 0.07578316 0.108213484 prediction 0.619140016996657 Functional Gain - RGS7BP ENSG00000186479 CDS Human protein_coding chr5:63871658 chr5:63871662 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_101327 0 0 0 0 2 RGS7BP chr5:63871601 3'AG 63871601 Downstream 62bp
chr5 63871662 63871662 1 + T A READ 63871658 + 63871638 63871678 41 CTTTACATCCAGCTGCAGTGCTGCTTAGAAATGTATACCAC CTTTACATCCAGCTGCAGTGCTGCATAGAAATGTATACCAC < 41bp 0.522768778723663 0.832338787221991 0.07578316 0.108213484 prediction 0.619140016996657 Functional Gain - RGS7BP ENSG00000186479 CDS Human protein_coding chr5:63871658 chr5:63871662 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_101327 0 0 0 0 2 RGS7BP chr5:63871731 5'GT 63871731 Upstream 70bp
chr11 70017068 70017068 1 + T G STAD 70017066 + 70017046 70017086 41 CTGTTTGCGCTGCTGAACAACATCATCGAGATCCGCCTGGA CTGTTTGCGCTGCTGAACAACAGCATCGAGATCCGCCTGGA < 41bp 0.511267514045583 0.820825966706628 0.02063343 0.110695004 prediction 0.619116905322089 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70017066 chr11:70017068 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_101328 0 0 0 0 2 ANO1 chr11:70016993 3'AG 70016993 Downstream 76bp
chr11 70017068 70017068 1 + T G STAD 70017066 + 70017046 70017086 41 CTGTTTGCGCTGCTGAACAACATCATCGAGATCCGCCTGGA CTGTTTGCGCTGCTGAACAACAGCATCGAGATCCGCCTGGA < 41bp 0.511267514045583 0.820825966706628 0.02063343 0.110695004 prediction 0.619116905322089 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70017066 chr11:70017068 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_101328 0 0 0 0 2 ANO1 chr11:70017145 5'GT 70017145 Upstream 78bp
chr4 152201036 152201036 1 + T G CESC 152201033 + 152201013 152201053 41 CCTTGGCAGGTCAGCCTACACTTTGACCACAACTTTATCTG CCTTGGCAGGTCAGCCTACACTTGGACCACAACTTTATCTG < 41bp 0.434140142497476 0.809528141615986 0.19991583 0.19587561 prediction 0.619056283231972 Functional Gain - PRSS48 ENSG00000189099 CDS Human protein_coding chr4:152201033 chr4:152201036 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_101329 0 0 0 0 1 PRSS48 chr4:152201110 5'GT 152201110 Upstream 75bp
chr12 20766431 20766431 1 + C A COAD 20766427 + 20766407 20766447 41 GCCGTCATGGGCGAGGCCCACGGCCTCATTACCGACCTCCT GCCGTCATGGGCGAGGCCCACGGCATCATTACCGACCTCCT < 41bp 0.414574225955372 0.809469617662369 0.41969168 0.48040602 prediction 0.618939235324739 Functional Gain - PDE3A ENSG00000172572 CDS Human protein_coding chr12:20766427 chr12:20766431 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_101336 0 0 0 0 1 PDE3A chr12:20766377 3'AG 20766377 Downstream 55bp
chr12 8995918 8995918 1 + C A COAD 8995914 + 8995894 8995934 41 GGTGGATTATTACATCGACCCGGCCGATGCAAGCCCTGACC GGTGGATTATTACATCGACCCGGCAGATGCAAGCCCTGACC < 41bp 0.416535764498621 0.809429471280641 0.847986 0.8606864 prediction 0.618858942561282 Functional Gain - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:8995914 chr12:8995918 synonymous SNV . 0 25 hm5C_associated_SNPs_101338 0 0 0 0 1 A2ML1 chr12:8995957 5'GT 8995957 Upstream 40bp
chrX 150909321 150909321 1 + C A LUSC 150909317 + 150909297 150909337 41 GCTGGGGATTGGTACTACTGCTGGCTATTTGTCATTGCCAT GCTGGGGATTGGTACTACTGCTGGATATTTGTCATTGCCAT < 41bp 0.588620534804676 0.898037296691902 0.07900575 0.1719248 prediction 0.618833523774453 Functional Gain - CNGA2 ENSG00000183862 CDS Human protein_coding chrX:150909317 chrX:150909321 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_101339 0 0 0 0 2 CNGA2 chrX:150909266 3'AG 150909266 Downstream 56bp
chrX 150909321 150909321 1 + C A LUSC 150909317 + 150909297 150909337 41 GCTGGGGATTGGTACTACTGCTGGCTATTTGTCATTGCCAT GCTGGGGATTGGTACTACTGCTGGATATTTGTCATTGCCAT < 41bp 0.588620534804676 0.898037296691902 0.07900575 0.1719248 prediction 0.618833523774453 Functional Gain - CNGA2 ENSG00000183862 CDS Human protein_coding chrX:150909317 chrX:150909321 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_101339 0 0 0 0 2 CNGA2 chrX:150909373 5'GT 150909373 Upstream 53bp
chr1 166962004 166962004 1 + C A ACC 166962000 + 166961980 166962020 41 CTCATTGTGAACAGCGCTTCCTCCCTTGTGAAATTGGCTGT CTCATTGTGAACAGCGCTTCCTCCATTGTGAAATTGGCTGT < 41bp 0.393283373093099 0.809357058734982 0.059742987 0.95384717 prediction 0.618714117469964 Functional Gain - MAEL ENSG00000143194 CDS Human protein_coding chr1:166962000 chr1:166962004 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101342 0 0 0 1 2 MAEL chr1:166961923 3'AG 166961923 Downstream 82bp
chr1 166962004 166962004 1 + C A ACC 166962000 + 166961980 166962020 41 CTCATTGTGAACAGCGCTTCCTCCCTTGTGAAATTGGCTGT CTCATTGTGAACAGCGCTTCCTCCATTGTGAAATTGGCTGT < 41bp 0.393283373093099 0.809357058734982 0.059742987 0.95384717 prediction 0.618714117469964 Functional Gain - MAEL ENSG00000143194 CDS Human protein_coding chr1:166962000 chr1:166962004 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101342 0 0 0 1 2 MAEL chr1:166962078 5'GT 166962078 Upstream 75bp
chr14 24538442 24538442 1 + C A UCEC 24538438 + 24538418 24538458 41 AGCTGGAACCTGATAGAAGACGGCCTCCTGACCCCACAGGT AGCTGGAACCTGATAGAAGACGGCATCCTGACCCCACAGGT < 41bp 0.418561008057135 0.809346303228723 0.35671747 0.42265725 prediction 0.618692606457446 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24538438 chr14:24538442 nonsynonymous SNV 0.514 4 25 hm5C_associated_SNPs_101344 0 0 0 0 2 CARMIL3 chr14:24538346 3'AG 24538346 Downstream 97bp
chr14 24538442 24538442 1 + C A UCEC 24538438 + 24538418 24538458 41 AGCTGGAACCTGATAGAAGACGGCCTCCTGACCCCACAGGT AGCTGGAACCTGATAGAAGACGGCATCCTGACCCCACAGGT < 41bp 0.418561008057135 0.809346303228723 0.35671747 0.42265725 prediction 0.618692606457446 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24538438 chr14:24538442 nonsynonymous SNV 0.514 4 25 hm5C_associated_SNPs_101344 0 0 0 0 2 CARMIL3 chr14:24538456 5'GT 24538456 Upstream 15bp
chr19 18497248 18497248 1 + C A COAD 18497244 + 18497224 18497264 41 TTCGAACACCGACCTCGTCCCGGCCCCTGCAGTCCGGATAC TTCGAACACCGACCTCGTCCCGGCACCTGCAGTCCGGATAC < 41bp 0.434016265443185 0.809343039571342 0.2957179 0.5413237 prediction 0.618686079142684 Functional Gain - GDF15 ENSG00000130513 CDS Human protein_coding chr19:18497244 chr19:18497248 synonymous SNV . 0 25 hm5C_associated_SNPs_101345 0 0 1 0 1 GDF15 chr19:18497276 5'GT 18497276 Upstream 29bp
chr9 138413985 138413985 1 + C A UCEC 138413981 + 138413961 138414001 41 GGTGACACCCATGACCCTCACGACCCTGGAAGGGGGCAACC GGTGACACCCATGACCCTCACGACACTGGAAGGGGGCAACC < 41bp 0.408553682393806 0.809291563378067 0.38147217 0.33868027 prediction 0.618583126756134 Functional Gain - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138413981 chr9:138413985 synonymous SNV . 0 25 hm5C_associated_SNPs_101348 0 0 0 0 2 LCN1 chr9:138413893 3'AG 138413893 Downstream 93bp
chr9 138413985 138413985 1 + C A UCEC 138413981 + 138413961 138414001 41 GGTGACACCCATGACCCTCACGACCCTGGAAGGGGGCAACC GGTGACACCCATGACCCTCACGACACTGGAAGGGGGCAACC < 41bp 0.408553682393806 0.809291563378067 0.38147217 0.33868027 prediction 0.618583126756134 Functional Gain - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138413981 chr9:138413985 synonymous SNV . 0 25 hm5C_associated_SNPs_101348 0 0 0 0 2 LCN1 chr9:138414023 5'GT 138414023 Upstream 39bp
chr21 45820227 45820227 1 + T G HNSC 45820224 + 45820204 45820244 41 CCTGTGCATGCTGGCCTTCCCGCTGCTCCTCACCGGCCTCA CCTGTGCATGCTGGCCTTCCCGCGGCTCCTCACCGGCCTCA < 41bp 0.57219305019464 0.881468141606056 0.19117966 0.88645124 prediction 0.618550182822832 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45820224 chr21:45820227 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_101349 0 0 0 0 2 TRPM2 chr21:45820142 3'AG 45820142 Downstream 86bp
chr21 45820227 45820227 1 + T G HNSC 45820224 + 45820204 45820244 41 CCTGTGCATGCTGGCCTTCCCGCTGCTCCTCACCGGCCTCA CCTGTGCATGCTGGCCTTCCCGCGGCTCCTCACCGGCCTCA < 41bp 0.57219305019464 0.881468141606056 0.19117966 0.88645124 prediction 0.618550182822832 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45820224 chr21:45820227 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_101349 0 0 0 0 2 TRPM2 chr21:45820254 5'GT 45820254 Upstream 28bp
chr17 73636303 73636303 1 + C A rs116652979 73636299 + 73636279 73636319 41 GGCATGGCTGCCACCGACTTCGTGCAGGAGATGCGCGCCGT GGCATGGCTGCCACCGACTTCGTGAAGGAGATGCGCGCCGT < 41bp 0.564444533596535 0.873693293874223 0.09845266 0.31492078 prediction 0.618497520555375 Functional Gain - SMIM5 ENSG00000204323 CDS Human protein_coding chr17:73636299 chr17:73636303 nonsynonymous SNV 0.515 0 25 hm5C_associated_SNPs_101352 0 0 0 0 1 SMIM5 chr17:73636246 3'AG 73636246 Downstream 58bp
chr1 155148088 155148088 1 + C A COAD 155148084 + 155148064 155148104 41 CCCGCCTCTCCCGCAGAACTCTCCCCAAGCCAGACCGCCTG CCCGCCTCTCCCGCAGAACTCTCCACAAGCCAGACCGCCTG < 41bp 0.581037006640963 0.890246342477571 0.13804609 0.9441215 prediction 0.618418671673216 Functional Gain - TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155148084 chr1:155148088 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101356 0 0 0 0 1 TRIM46 chr1:155148123 5'GT 155148123 Upstream 36bp
chr1 55148459 55148459 1 + C A rs368360289 55148455 + 55148435 55148475 41 AAGGAGGGCCGGGCTTCCATCGTGCCCCTGGCGGTGAGCAC AAGGAGGGCCGGGCTTCCATCGTGACCCTGGCGGTGAGCAC < 41bp 0.449768402300148 0.809206075123601 0.41623804 0.34943157 prediction 0.618412150247202 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55148455 chr1:55148459 nonsynonymous SNV 0.121 3 25 hm5C_associated_SNPs_101357 0 0 0 0 1 MROH7 chr1:55148467 5'GT 55148467 Upstream 9bp
chrX 100079227 100079227 1 + C A rs150166686 100079223 + 100079203 100079243 41 CAATGAACCAGCAGAATCCTCAGGCCCCTCAGGCCCAGTCT CAATGAACCAGCAGAATCCTCAGGACCCTCAGGCCCAGTCT < 41bp 0.584583928405859 0.893717707597179 0.915642 0.9202935 prediction 0.618267558382641 Functional Gain - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100079223 chrX:100079227 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_101359 0 0 1 0 1 CSTF2 chrX:100079246 5'GT 100079246 Upstream 20bp
chr11 125365418 125365418 1 + C A rs11220100 125365414 + 125365394 125365434 41 GTAGTAAAACAATCGCTCTCCCGGCGTCTGCGGCCGCTGCC GTAGTAAAACAATCGCTCTCCCGGAGTCTGCGGCCGCTGCC < 41bp 0.544556488701227 0.853669866791684 0.90238297 0.90861124 prediction 0.618226756180914 Functional Gain - LOC403312 ENSG00000255537 CDS Human antisense chr11:125365414 chr11:125365418 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_101360 0 0 0 0 1 LOC403312 chr11:125365511 5'GT 125365511 Upstream 94bp
chr16 722946 722946 1 + C A STAD 722942 + 722922 722962 41 CCACAGCACCATTACATGGACGGGCAGACCCCCTGCCTCTT CCACAGCACCATTACATGGACGGGAAGACCCCCTGCCTCTT < 41bp 0.575677013165729 0.884758541272142 0.84480387 0.82324106 prediction 0.618163056212826 Functional Gain - RHOT2 ENSG00000140983 CDS Human protein_coding chr16:722942 chr16:722946 nonsynonymous SNV 0.984 0 25 hm5C_associated_SNPs_101362 0 0 1 0 1 RHOT2 chr16:722928 3'AG 722928 Downstream 19bp
chr22 31658167 31658167 1 + C A UCEC 31658163 + 31658143 31658183 41 CCAACAATCGAAACGCCATCCACCCTGGGGACCGCATCCTG CCAACAATCGAAACGCCATCCACCATGGGGACCGCATCCTG < 41bp 0.386122701698355 0.809054613503836 0.022981882 0.06170392 prediction 0.618109227007672 Functional Gain - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31658163 chr22:31658167 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_101364 0 0 0 0 1 LIMK2 chr22:31658225 5'GT 31658225 Upstream 59bp
chr5 169535405 169535405 1 + T G SKCM 169535402 + 169535382 169535422 41 CCAGGACTGAGCCCTGAGCCCAGTGACAAGACGGGGCAGAA CCAGGACTGAGCCCTGAGCCCAGGGACAAGACGGGGCAGAA < 41bp 0.573896785459019 0.882909604177676 0.21624735 0.8985394 prediction 0.618025637437315 Functional Gain - FOXI1 ENSG00000168269 CDS Human protein_coding chr5:169535402 chr5:169535405 nonsynonymous SNV 0.182 1 24 hm5C_associated_SNPs_101366 0 0 0 0 1 FOXI1 chr5:169535338 3'AG 169535338 Downstream 68bp
chr7 142568345 142568345 1 + C A LUAD 142568341 + 142568321 142568361 41 TTCCTTGTCTGGACTCACCCCAGGCCTGGCTTTCAGCCATT TTCCTTGTCTGGACTCACCCCAGGACTGGCTTTCAGCCATT < 41bp 0.421354786400178 0.809000942537636 0.8026347 0.86230445 prediction 0.618001885075272 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142568341 chr7:142568345 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_101368 0 0 0 0 1 EPHB6 chr7:142568283 3'AG 142568283 Downstream 63bp
chr2 223554115 223554115 1 + C A UCEC 223554111 + 223554091 223554131 41 TGACTTCAAGGACCTGTTTCCTGGCTTTACTTCATATCTTC TGACTTCAAGGACCTGTTTCCTGGATTTACTTCATATCTTC < 41bp 0.579627862754366 0.888625144462289 0.26310098 0.28651747 prediction 0.617994563415845 Functional Gain - MOGAT1 ENSG00000124003 CDS Human protein_coding chr2:223554111 chr2:223554115 synonymous SNV . 0 25 hm5C_associated_SNPs_101369 0 0 0 0 1 MOGAT1 chr2:223554188 5'GT 223554188 Upstream 74bp
chr17 61768554 61768554 1 + T G STAD 61768551 + 61768531 61768571 41 TATGGCTGTCTGCGGGACCGCGCTGAGAAGACCCTGACCAT TATGGCTGTCTGCGGGACCGCGCGGAGAAGACCCTGACCAT < 41bp 0.438361140118846 0.808964629407398 0.1056349 0.8392304 prediction 0.617929258814797 Functional Gain - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61768551 chr17:61768554 synonymous SNV . 0 24 hm5C_associated_SNPs_101371 0 0 1 0 2 MAP3K3 chr17:61768462 3'AG 61768462 Downstream 93bp
chr17 61768554 61768554 1 + T G STAD 61768551 + 61768531 61768571 41 TATGGCTGTCTGCGGGACCGCGCTGAGAAGACCCTGACCAT TATGGCTGTCTGCGGGACCGCGCGGAGAAGACCCTGACCAT < 41bp 0.438361140118846 0.808964629407398 0.1056349 0.8392304 prediction 0.617929258814797 Functional Gain - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61768551 chr17:61768554 synonymous SNV . 0 24 hm5C_associated_SNPs_101371 0 0 1 0 2 MAP3K3 chr17:61768593 5'GT 61768593 Upstream 40bp
chr16 771422 771422 1 + C A rs149844405 771418 + 771398 771438 41 CTCCAGCCCGGCTTCCGGCGCGTGCCGCTGCGGCTGCAGGT CTCCAGCCCGGCTTCCGGCGCGTGACGCTGCGGCTGCAGGT < 41bp 0.520880207214613 0.829780632890884 0.43636146 0.6294311 prediction 0.617800851352542 Functional Gain - FAM173A ENSG00000103254 CDS Human protein_coding chr16:771418 chr16:771422 nonsynonymous SNV 0.565 3 25 hm5C_associated_SNPs_101372 0 0 1 0 1 FAM173A chr16:771436 5'GT 771436 Upstream 15bp
chr7 73456962 73456962 1 + C A PRAD 73456958 + 73456938 73456978 41 CCGCAGGGCTCGGCGCCTTCCCCGCAGTTACCTTTCCGGGG CCGCAGGGCTCGGCGCCTTCCCCGAAGTTACCTTTCCGGGG < 41bp 0.545754469991937 0.854559638207001 0.12733358 0.1471591 prediction 0.617610336430128 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73456958 chr7:73456962 nonsynonymous SNV 0.143 1 25 hm5C_associated_SNPs_101378 0 0 0 0 3 ELN chr7:73456944 3'AG 73456944 Downstream 19bp
chr7 73456962 73456962 1 + C A PRAD 73456958 + 73456938 73456978 41 CCGCAGGGCTCGGCGCCTTCCCCGCAGTTACCTTTCCGGGG CCGCAGGGCTCGGCGCCTTCCCCGAAGTTACCTTTCCGGGG < 41bp 0.545754469991937 0.854559638207001 0.12733358 0.1471591 prediction 0.617610336430128 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73456958 chr7:73456962 nonsynonymous SNV 0.143 1 25 hm5C_associated_SNPs_101378 0 0 0 0 3 ELN chr7:73456996 5'GT 73456996 Upstream 35bp
chr7 73456962 73456962 1 + C A PRAD 73456958 + 73456938 73456978 41 CCGCAGGGCTCGGCGCCTTCCCCGCAGTTACCTTTCCGGGG CCGCAGGGCTCGGCGCCTTCCCCGAAGTTACCTTTCCGGGG < 41bp 0.545754469991937 0.854559638207001 0.12733358 0.1471591 prediction 0.617610336430128 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73456958 chr7:73456962 nonsynonymous SNV 0.143 1 25 hm5C_associated_SNPs_101378 0 0 0 0 3 ELN chr7:73457036 5'GT 73457036 Upstream 75bp
chr12 4874620 4874620 1 + C A LUAD 4874616 + 4874596 4874636 41 GAGGCCAGTGCTAGTGATCGCTGCCTGACAGACCCTGGCAA GAGGCCAGTGCTAGTGATCGCTGCATGACAGACCCTGGCAA < 41bp 0.590272959623073 0.899067192480038 0.37433237 0.43775123 prediction 0.61758846571393 Functional Gain - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4874616 chr12:4874620 nonsynonymous SNV 0.122 4 25 hm5C_associated_SNPs_101379 0 0 0 0 2 GALNT8 chr12:4874545 3'AG 4874545 Downstream 76bp
chr12 4874620 4874620 1 + C A LUAD 4874616 + 4874596 4874636 41 GAGGCCAGTGCTAGTGATCGCTGCCTGACAGACCCTGGCAA GAGGCCAGTGCTAGTGATCGCTGCATGACAGACCCTGGCAA < 41bp 0.590272959623073 0.899067192480038 0.37433237 0.43775123 prediction 0.61758846571393 Functional Gain - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4874616 chr12:4874620 nonsynonymous SNV 0.122 4 25 hm5C_associated_SNPs_101379 0 0 0 0 2 GALNT8 chr12:4874712 5'GT 4874712 Upstream 93bp
chr20 2375200 2375200 1 + C A LUSC 2375196 + 2375176 2375216 41 AGCTGGTGGTTCGCAGGGGCCAGTCGTTCAGCCTCACGCTG AGCTGGTGGTTCGCAGGGGCCAGTAGTTCAGCCTCACGCTG < 41bp 0.423980858441611 0.808721489931366 0.73338085 0.7982507 prediction 0.617442979862731 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2375196 chr20:2375200 stopgain 0.256 0 25 hm5C_associated_SNPs_101384 0 0 0 0 1 TGM6 chr20:2375271 5'GT 2375271 Upstream 72bp
chr5 2753468 2753468 1 + C A UCEC 2753464 + 2753444 2753484 41 GCTCCTCCTGAGCCGGCAGGCTCCCGGTAGGCGCGGTCCAG GCTCCTCCTGAGCCGGCAGGCTCCAGGTAGGCGCGGTCCAG < 41bp 0.431141838251651 0.80868701902992 0.44223225 0.7782366 prediction 0.61737403805984 Functional Gain - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2753464 chr5:2753468 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_101385 0 0 0 0 2 C5orf38 chr5:2753399 3'AG 2753399 Downstream 70bp
chr5 2753468 2753468 1 + C A UCEC 2753464 + 2753444 2753484 41 GCTCCTCCTGAGCCGGCAGGCTCCCGGTAGGCGCGGTCCAG GCTCCTCCTGAGCCGGCAGGCTCCAGGTAGGCGCGGTCCAG < 41bp 0.431141838251651 0.80868701902992 0.44223225 0.7782366 prediction 0.61737403805984 Functional Gain - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2753464 chr5:2753468 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_101385 0 0 0 0 2 C5orf38 chr5:2753469 5'GT 2753469 Upstream 2bp
chr15 41745191 41745191 1 + C A PAAD 41745187 + 41745167 41745207 41 GAAGAAACAGGCCAACAAAACTGCCTCCTCAGGCAGTTCAG GAAGAAACAGGCCAACAAAACTGCATCCTCAGGCAGTTCAG < 41bp 0.398877223147475 0.808585921852146 0.3996672 0.22653085 prediction 0.617171843704292 Functional Gain - RTF1 ENSG00000137815 CDS Human protein_coding chr15:41745187 chr15:41745191 synonymous SNV . 0 25 hm5C_associated_SNPs_101390 0 0 1 0 2 RTF1 chr15:41745099 3'AG 41745099 Downstream 93bp
chr15 41745191 41745191 1 + C A PAAD 41745187 + 41745167 41745207 41 GAAGAAACAGGCCAACAAAACTGCCTCCTCAGGCAGTTCAG GAAGAAACAGGCCAACAAAACTGCATCCTCAGGCAGTTCAG < 41bp 0.398877223147475 0.808585921852146 0.3996672 0.22653085 prediction 0.617171843704292 Functional Gain - RTF1 ENSG00000137815 CDS Human protein_coding chr15:41745187 chr15:41745191 synonymous SNV . 0 25 hm5C_associated_SNPs_101390 0 0 1 0 2 RTF1 chr15:41745246 5'GT 41745246 Upstream 56bp
chr4 56738061 56738061 1 + T G rs112233016 56738058 + 56738038 56738078 41 AAACAGCAACAGCAGCGATTCAGTGATTTGCGAGAGCTTTT AAACAGCAACAGCAGCGATTCAGGGATTTGCGAGAGCTTTT < 41bp 0.570461990626241 0.878912705711951 0.24568808 0.8925612 prediction 0.61690143017142 Functional Gain - EXOC1 ENSG00000090989 CDS Human protein_coding chr4:56738058 chr4:56738061 nonsynonymous SNV 0.027 0 24 hm5C_associated_SNPs_101395 0 0 1 0 2 EXOC1 chr4:56738015 3'AG 56738015 Downstream 47bp
chr4 56738061 56738061 1 + T G rs112233016 56738058 + 56738038 56738078 41 AAACAGCAACAGCAGCGATTCAGTGATTTGCGAGAGCTTTT AAACAGCAACAGCAGCGATTCAGGGATTTGCGAGAGCTTTT < 41bp 0.570461990626241 0.878912705711951 0.24568808 0.8925612 prediction 0.61690143017142 Functional Gain - EXOC1 ENSG00000090989 CDS Human protein_coding chr4:56738058 chr4:56738061 nonsynonymous SNV 0.027 0 24 hm5C_associated_SNPs_101395 0 0 1 0 2 EXOC1 chr4:56738124 5'GT 56738124 Upstream 64bp
chr17 40817744 40817744 1 + T A COAD 40817740 + 40817720 40817760 41 ACCACCACCCTGCGCTACCCCGGCTACATGAACAATGACCT ACCACCACCCTGCGCTACCCCGGCAACATGAACAATGACCT < 41bp 0.495645115471799 0.80842099996774 0.24210626 0.4159652 prediction 0.61684199993548 Functional Gain - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817740 chr17:40817744 nonsynonymous SNV 0.976 4 25 hm5C_associated_SNPs_101399 0 0 0 0 1 TUBG2 chr17:40817696 3'AG 40817696 Downstream 49bp
chr3 42982786 42982786 1 + C A LUAD 42982782 + 42982762 42982802 41 GGAATGGGCCATCATGGTGCCTGCCGAGAGGGCCTTGTACA GGAATGGGCCATCATGGTGCCTGCAGAGAGGGCCTTGTACA < 41bp 0.592583196971235 0.900936727542771 0.014815658 0.04933256 prediction 0.616707061143073 Functional Gain - KRBOX1 ENSG00000240747;ENSG00000273291 CDS Human other chr3:42982782 chr3:42982786 synonymous SNV . 0 25 hm5C_associated_SNPs_101400 0 0 0 0 2 KRBOX1 chr3:42982718 3'AG 42982718 Downstream 69bp
chr3 42982786 42982786 1 + C A LUAD 42982782 + 42982762 42982802 41 GGAATGGGCCATCATGGTGCCTGCCGAGAGGGCCTTGTACA GGAATGGGCCATCATGGTGCCTGCAGAGAGGGCCTTGTACA < 41bp 0.592583196971235 0.900936727542771 0.014815658 0.04933256 prediction 0.616707061143073 Functional Gain - KRBOX1 ENSG00000240747;ENSG00000273291 CDS Human other chr3:42982782 chr3:42982786 synonymous SNV . 0 25 hm5C_associated_SNPs_101400 0 0 0 0 2 KRBOX1 chr3:42982844 5'GT 42982844 Upstream 59bp
chr3 148744247 148744247 1 + C A OV 148744243 + 148744223 148744263 41 AATGAACTGTTTGCAGCTTTCAGACTTGGTCTATACACTGG AATGAACTGTTTGCAGCTTTCAGAATTGGTCTATACACTGG < 41bp 0.438825995578896 0.808350885245518 0.31194413 0.414985 prediction 0.616701770491035 Functional Gain - GYG1 ENSG00000163754 CDS Human protein_coding chr3:148744243 chr3:148744247 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_101401 0 0 1 0 2 GYG1 chr3:148744239 3'AG 148744239 Downstream 9bp
chr3 148744247 148744247 1 + C A OV 148744243 + 148744223 148744263 41 AATGAACTGTTTGCAGCTTTCAGACTTGGTCTATACACTGG AATGAACTGTTTGCAGCTTTCAGAATTGGTCTATACACTGG < 41bp 0.438825995578896 0.808350885245518 0.31194413 0.414985 prediction 0.616701770491035 Functional Gain - GYG1 ENSG00000163754 CDS Human protein_coding chr3:148744243 chr3:148744247 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_101401 0 0 1 0 2 GYG1 chr3:148744289 5'GT 148744289 Upstream 43bp
chr8 182580 182580 1 + C A rs114199088 182576 + 182556 182596 41 GCCCGGAAATGCTCCGAAGCCTGTCGCCCAGCTGCCAGATC GCCCGGAAATGCTCCGAAGCCTGTAGCCCAGCTGCCAGATC < 41bp 0.499635978659473 0.808318927635285 0.05144 0.10252729 prediction 0.616637855270569 Functional Gain - ZNF596 ENSG00000172748 UTR5 Human protein_coding chr8:182576 chr8:182580 . . 0 25 hm5C_associated_SNPs_101402 0 0 1 0 1 ZNF596 chr8:182624 5'GT 182624 Upstream 45bp
chr16 67575459 67575459 1 + C A OV 67575455 + 67575435 67575475 41 ATCAATGACCTTGGTACCATCAAGCTCAGCCTGGAAGTCAC ATCAATGACCTTGGTACCATCAAGATCAGCCTGGAAGTCAC < 41bp 0.422504398011633 0.808212021560153 0.15803552 0.3406079 prediction 0.616424043120307 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67575455 chr16:67575459 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_101407 0 0 0 0 1 RIPOR1 chr16:67575481 5'GT 67575481 Upstream 23bp
chr3 183957262 183957262 1 + C A ESCA 183957258 + 183957238 183957278 41 CCGAAGCCTCTCATCCCCTCCAGGCCGGGCAAACCAAGTCC CCGAAGCCTCTCATCCCCTCCAGGACGGGCAAACCAAGTCC < 41bp 0.413978789925007 0.808158180867001 0.26282674 0.12891689 prediction 0.616316361734001 Functional Gain - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183957258 chr3:183957262 synonymous SNV . 0 25 hm5C_associated_SNPs_101412 0 0 0 0 1 VWA5B2 chr3:183957182 3'AG 183957182 Downstream 81bp
chr8 8090332 8090332 1 + T G rs527964025 8090329 + 8090309 8090349 41 GCCGTAGACTGTGAGGCATCCTGTGTGTGTGAAGCACCCGC GCCGTAGACTGTGAGGCATCCTGGGTGTGTGAAGCACCCGC < 41bp 0.444386999951058 0.808101867741367 0.07697618 0.760841 prediction 0.616203735482734 Functional Gain - FAM86B3P ENSG00000173295 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr8:8090329 chr8:8090332 . . 0 24 hm5C_associated_SNPs_101417 0 0 0 1 2 FAM86B3P chr8:8090316 3'AG 8090316 Downstream 17bp
chr8 8090332 8090332 1 + T G rs527964025 8090329 + 8090309 8090349 41 GCCGTAGACTGTGAGGCATCCTGTGTGTGTGAAGCACCCGC GCCGTAGACTGTGAGGCATCCTGGGTGTGTGAAGCACCCGC < 41bp 0.444386999951058 0.808101867741367 0.07697618 0.760841 prediction 0.616203735482734 Functional Gain - FAM86B3P ENSG00000173295 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr8:8090329 chr8:8090332 . . 0 24 hm5C_associated_SNPs_101417 0 0 0 1 2 FAM86B3P chr8:8090396 5'GT 8090396 Upstream 65bp
chr14 55226975 55226975 1 + C A rs149535594 55226971 + 55226951 55226991 41 GCCTACAGCTCCCCGAGCACCACCCCCGAGGCTCGCCGCCG GCCTACAGCTCCCCGAGCACCACCACCGAGGCTCGCCGCCG < 41bp 0.403076354705148 0.808074845113295 0.0906944 0.1434825 prediction 0.61614969022659 Functional Gain - SAMD4A ENSG00000020577 CDS Human protein_coding chr14:55226971 chr14:55226975 nonsynonymous SNV 0.136 1 25 hm5C_associated_SNPs_101421 0 0 1 0 1 SAMD4A chr14:55226879 3'AG 55226879 Downstream 97bp
chr22 18898421 18898421 1 + T G rs185483691 18898418 + 18898398 18898438 41 CAGGCGGTGGAGCACCGGATCCGTGAGGAGCAGCGGGCGAT CAGGCGGTGGAGCACCGGATCCGGGAGGAGCAGCGGGCGAT < 41bp 0.431348600626844 0.808048841818827 0.4720018 0.90495646 prediction 0.616097683637655 Functional Gain - DGCR6 ENSG00000183628 CDS Human protein_coding chr22:18898418 chr22:18898421 synonymous SNV . 0 24 hm5C_associated_SNPs_101424 0 0 0 1 1 DGCR6 chr22:18898401 3'AG 18898401 Downstream 21bp
chr15 91478585 91478585 1 + C A rs572718253 91478581 + 91478561 91478601 41 GTGAGTGGTCCAGGGACCCCCGAGCCCCGGCCGGCCACCCC GTGAGTGGTCCAGGGACCCCCGAGACCCGGCCGGCCACCCC < 41bp 0.453283494535902 0.808028051329403 0.89328337 0.91391885 prediction 0.616056102658807 Functional Gain - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91478581 chr15:91478585 nonsynonymous SNV 0.199 1 25 hm5C_associated_SNPs_101426 0 0 1 0 1 UNC45A chr15:91478605 5'GT 91478605 Upstream 21bp
chr8 24255215 24255215 1 + C A LUSC 24255211 + 24255191 24255231 41 TAAAGAAAGAAGACTTTCTTCGGGCACAGAAATACATTGAT TAAAGAAAGAAGACTTTCTTCGGGAACAGAAATACATTGAT < 41bp 0.570787453252622 0.87878001131162 0.5754367 0.6427641 prediction 0.615985116117997 Functional Gain - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24255211 chr8:24255215 nonsynonymous SNV 0.612 0 25 hm5C_associated_SNPs_101428 0 0 0 0 2 ADAMDEC1 chr8:24255196 3'AG 24255196 Downstream 20bp
chr8 24255215 24255215 1 + C A LUSC 24255211 + 24255191 24255231 41 TAAAGAAAGAAGACTTTCTTCGGGCACAGAAATACATTGAT TAAAGAAAGAAGACTTTCTTCGGGAACAGAAATACATTGAT < 41bp 0.570787453252622 0.87878001131162 0.5754367 0.6427641 prediction 0.615985116117997 Functional Gain - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24255211 chr8:24255215 nonsynonymous SNV 0.612 0 25 hm5C_associated_SNPs_101428 0 0 0 0 2 ADAMDEC1 chr8:24255258 5'GT 24255258 Upstream 44bp
chr14 94467567 94467567 1 + C A rs59039338 94467563 + 94467543 94467583 41 GCACTACGGGAAGCTCTTCACAGCCAGCCAGGACACGCAGA GCACTACGGGAAGCTCTTCACAGCAAGCCAGGACACGCAGA < 41bp 0.550636756718166 0.858520406470654 0.070250124 0.28888538 prediction 0.615767299504976 Functional Gain - C14orf48 ENSG00000175699 ncRNA_exonic Human protein_coding chr14:94467563 chr14:94467567 . . 0 25 hm5C_associated_SNPs_101432 0 0 0 1 2 C14orf48 chr14:94467491 3'AG 94467491 Downstream 77bp
chr14 94467567 94467567 1 + C A rs59039338 94467563 + 94467543 94467583 41 GCACTACGGGAAGCTCTTCACAGCCAGCCAGGACACGCAGA GCACTACGGGAAGCTCTTCACAGCAAGCCAGGACACGCAGA < 41bp 0.550636756718166 0.858520406470654 0.070250124 0.28888538 prediction 0.615767299504976 Functional Gain - C14orf48 ENSG00000175699 ncRNA_exonic Human protein_coding chr14:94467563 chr14:94467567 . . 0 25 hm5C_associated_SNPs_101432 0 0 0 1 2 C14orf48 chr14:94467665 5'GT 94467665 Upstream 99bp
chr3 38155899 38155899 1 + C A STAD 38155895 + 38155875 38155915 41 GCGGTGGGCTGCCCCATCAGCTCCCTGAGGACCACCTCCTA GCGGTGGGCTGCCCCATCAGCTCCATGAGGACCACCTCCTA < 41bp 0.384791078357362 0.807849033576898 0.16383123 0.90857196 prediction 0.615698067153795 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38155895 chr3:38155899 nonsynonymous SNV 0.992 1 25 hm5C_associated_SNPs_101434 0 0 0 0 2 DLEC1 chr3:38155833 3'AG 38155833 Downstream 67bp
chr3 38155899 38155899 1 + C A STAD 38155895 + 38155875 38155915 41 GCGGTGGGCTGCCCCATCAGCTCCCTGAGGACCACCTCCTA GCGGTGGGCTGCCCCATCAGCTCCATGAGGACCACCTCCTA < 41bp 0.384791078357362 0.807849033576898 0.16383123 0.90857196 prediction 0.615698067153795 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38155895 chr3:38155899 nonsynonymous SNV 0.992 1 25 hm5C_associated_SNPs_101434 0 0 0 0 2 DLEC1 chr3:38155951 5'GT 38155951 Upstream 53bp
chr19 56372911 56372911 1 + T G BRCA 56372909 + 56372889 56372929 41 CCAGCTGTCGCCTTCAGAAGCTTGGGTGAGTTGAGAATCGA CCAGCTGTCGCCTTCAGAAGCTGGGGTGAGTTGAGAATCGA < 41bp 0.503688298638877 0.811517531703808 0.43640742 0.903916 prediction 0.615658466129863 Functional Gain - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56372909 chr19:56372911 synonymous SNV . 0 23 hm5C_associated_SNPs_101435 0 0 0 0 1 NLRP4 chr19:56372913 5'GT 56372913 Upstream 3bp
chr2 108863805 108863805 1 + C A COAD 108863801 + 108863781 108863821 41 CCAAGCCTGATGATCTTATTCTGGCAACTTACCCAAAGTCA CCAAGCCTGATGATCTTATTCTGGAAACTTACCCAAAGTCA < 41bp 0.570724829361791 0.878448891882084 0.11941287 0.23094869 prediction 0.615448125040585 Functional Gain - SULT1C3 ENSG00000196228 CDS Human protein_coding chr2:108863801 chr2:108863805 nonsynonymous SNV 0.000 4 25 hm5C_associated_SNPs_101440 0 0 0 0 1 SULT1C3 chr2:108863822 5'GT 108863822 Upstream 18bp
chr1 15767019 15767019 1 + T G SKCM 15767017 + 15766997 15767037 41 CCAGTACCTCAAGAACGACACGTGGAGGCATACGTGTGGCG CCAGTACCTCAAGAACGACACGGGGAGGCATACGTGTGGCG < 41bp 0.467464095021588 0.807704469624583 0.21744996 0.9157642 prediction 0.615408939249165 Functional Gain - CTRC ENSG00000162438 CDS Human protein_coding chr1:15767017 chr1:15767019 nonsynonymous SNV 0.077 4 23 hm5C_associated_SNPs_101442 0 0 0 0 2 CTRC chr1:15766989 3'AG 15766989 Downstream 31bp
chr1 15767019 15767019 1 + T G SKCM 15767017 + 15766997 15767037 41 CCAGTACCTCAAGAACGACACGTGGAGGCATACGTGTGGCG CCAGTACCTCAAGAACGACACGGGGAGGCATACGTGTGGCG < 41bp 0.467464095021588 0.807704469624583 0.21744996 0.9157642 prediction 0.615408939249165 Functional Gain - CTRC ENSG00000162438 CDS Human protein_coding chr1:15767017 chr1:15767019 nonsynonymous SNV 0.077 4 23 hm5C_associated_SNPs_101442 0 0 0 0 2 CTRC chr1:15767086 5'GT 15767086 Upstream 68bp
chr8 97847376 97847376 1 + C A LUAD 97847372 + 97847352 97847392 41 CAAGGTGGGGGCTTTGGCATCTCTCATTCGATCCGTGGCCT CAAGGTGGGGGCTTTGGCATCTCTAATTCGATCCGTGGCCT < 41bp 0.41431303678647 0.807694151862983 0.33258095 0.8788921 prediction 0.615388303725965 Functional Gain - CPQ ENSG00000104324 CDS Human protein_coding chr8:97847372 chr8:97847376 synonymous SNV . 0 25 hm5C_associated_SNPs_101444 0 0 1 0 1 CPQ chr8:97847408 5'GT 97847408 Upstream 33bp
chr1 203740015 203740015 1 + T A LUAD 203740011 + 203739991 203740031 41 TTGCGGGACTCCTCGCCATCCTCCTGGTCGTTGCGGTTTTC TTGCGGGACTCCTCGCCATCCTCCAGGTCGTTGCGGTTTTC < 41bp 0.477306739612461 0.807687905889568 0.13138717 0.93733764 prediction 0.615375811779136 Functional Gain - LAX1 ENSG00000122188 CDS Human protein_coding chr1:203740011 chr1:203740015 nonsynonymous SNV 0.017 4 25 hm5C_associated_SNPs_101445 0 0 0 0 1 LAX1 chr1:203739956 3'AG 203739956 Downstream 60bp
chr16 67913012 67913012 1 + C A BRCA 67913008 + 67912988 67913028 41 ACGGCACACTGAGGTGCTGCCTGCCGAAGAGGAAAATGACA ACGGCACACTGAGGTGCTGCCTGCAGAAGAGGAAAATGACA < 41bp 0.405828139708231 0.807587715222595 0.08005056 0.20026714 prediction 0.61517543044519 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67913008 chr16:67913012 synonymous SNV . 0 25 hm5C_associated_SNPs_101450 0 0 1 0 1 EDC4 chr16:67913040 5'GT 67913040 Upstream 29bp
chr1 48708137 48708137 1 + C A rs138087820 48708133 + 48708113 48708153 41 TCTTCTTTCCCTCCAGCTCACACGCCTCACATGGTGGACTC TCTTCTTTCCCTCCAGCTCACACGACTCACATGGTGGACTC < 41bp 0.58022085303502 0.887799790880882 0.1713118 0.31202275 prediction 0.615157875691724 Functional Gain - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48708133 chr1:48708137 synonymous SNV . 0 25 hm5C_associated_SNPs_101451 0 0 1 0 1 SLC5A9 chr1:48708129 3'AG 48708129 Downstream 9bp
chr6 167438310 167438310 1 + C A GBM 167438306 + 167438286 167438326 41 AAGCAAGCAGGAAGTCTGGCCTCGCTCTCGGATGCACCCCC AAGCAAGCAGGAAGTCTGGCCTCGATCTCGGATGCACCCCC < 41bp 0.493981963792141 0.80755963624233 0.21896216 0.8536687 prediction 0.61511927248466 Functional Gain - FGFR1OP ENSG00000213066 CDS Human protein_coding chr6:167438306 chr6:167438310 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_101452 0 0 1 0 2 FGFR1OP chr6:167438270 3'AG 167438270 Downstream 41bp
chr6 167438310 167438310 1 + C A GBM 167438306 + 167438286 167438326 41 AAGCAAGCAGGAAGTCTGGCCTCGCTCTCGGATGCACCCCC AAGCAAGCAGGAAGTCTGGCCTCGATCTCGGATGCACCCCC < 41bp 0.493981963792141 0.80755963624233 0.21896216 0.8536687 prediction 0.61511927248466 Functional Gain - FGFR1OP ENSG00000213066 CDS Human protein_coding chr6:167438306 chr6:167438310 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_101452 0 0 1 0 2 FGFR1OP chr6:167438273 3'AG 167438273 Downstream 38bp
chr17 76493049 76493049 1 + C A rs572484150 76493045 + 76493025 76493065 41 ATTACAGGCGTGAGCCACCACGCCCGGCCCCCAGATGGACT ATTACAGGCGTGAGCCACCACGCCAGGCCCCCAGATGGACT < 41bp 0.406106963328438 0.80753766293626 0.026918322 0.15186965 prediction 0.61507532587252 Functional Gain - DNAH17-AS1 ENSG00000267432 ncRNA_exonic Human processed_transcript chr17:76493045 chr17:76493049 . . 0 25 hm5C_associated_SNPs_101454 0 0 0 0 1 DNAH17-AS1 chr17:76493118 5'GT 76493118 Upstream 70bp
chr22 25715064 25715064 1 + C A rs532314236 25715060 + 25715040 25715080 41 ACCTTAGACTCAGAAGGTGACTAGCGGGGAGTAAACGGGAG ACCTTAGACTCAGAAGGTGACTAGAGGGGAGTAAACGGGAG < 41bp 0.459400354994975 0.807487284582585 0.13775578 0.42909098 prediction 0.614974569165171 Functional Gain - IGLL3P ENSG00000206066 ncRNA_intronic Human unprocessed_pseudogene chr22:25715060 chr22:25715064 . . 0 25 hm5C_associated_SNPs_101458 0 0 0 0 2 IGLL3P chr22:25715009 3'AG 25715009 Downstream 56bp
chr22 25715064 25715064 1 + C A rs532314236 25715060 + 25715040 25715080 41 ACCTTAGACTCAGAAGGTGACTAGCGGGGAGTAAACGGGAG ACCTTAGACTCAGAAGGTGACTAGAGGGGAGTAAACGGGAG < 41bp 0.459400354994975 0.807487284582585 0.13775578 0.42909098 prediction 0.614974569165171 Functional Gain - IGLL3P ENSG00000206066 ncRNA_intronic Human unprocessed_pseudogene chr22:25715060 chr22:25715064 . . 0 25 hm5C_associated_SNPs_101458 0 0 0 0 2 IGLL3P chr22:25715104 5'GT 25715104 Upstream 41bp
chr21 19289641 19289641 1 + C A rs544972359 19289637 + 19289617 19289657 41 ACTCAGACTGAGCTACTTCACTGGCTTTCCTGGTTCTCCAG ACTCAGACTGAGCTACTTCACTGGATTTCCTGGTTCTCCAG < 41bp 0.493489023455161 0.807485924270455 0.36558837 0.66334337 prediction 0.614971848540909 Functional Gain - CHODL ENSG00000154645 UTR5 Human protein_coding chr21:19289637 chr21:19289641 . . 0 25 hm5C_associated_SNPs_101459 0 0 0 0 1 CHODL chr21:19289717 5'GT 19289717 Upstream 77bp
chr6 147637445 147637445 1 + C A PRAD 147637441 + 147637421 147637461 41 GCAGCCACCACCTTTGCCAACACCCGTGGGAGGGTCCAACC GCAGCCACCACCTTTGCCAACACCAGTGGGAGGGTCCAACC < 41bp 0.407906101604245 0.807480189715905 0.24263495 0.385948 prediction 0.614960379431811 Functional Gain - STXBP5 ENSG00000164506 CDS Human protein_coding chr6:147637441 chr6:147637445 synonymous SNV . 0 25 hm5C_associated_SNPs_101461 0 0 1 0 2 STXBP5 chr6:147637365 3'AG 147637365 Downstream 81bp
chr6 147637445 147637445 1 + C A PRAD 147637441 + 147637421 147637461 41 GCAGCCACCACCTTTGCCAACACCCGTGGGAGGGTCCAACC GCAGCCACCACCTTTGCCAACACCAGTGGGAGGGTCCAACC < 41bp 0.407906101604245 0.807480189715905 0.24263495 0.385948 prediction 0.614960379431811 Functional Gain - STXBP5 ENSG00000164506 CDS Human protein_coding chr6:147637441 chr6:147637445 synonymous SNV . 0 25 hm5C_associated_SNPs_101461 0 0 1 0 2 STXBP5 chr6:147637543 5'GT 147637543 Upstream 99bp
chr12 57920109 57920109 1 + C A LUAD 57920105 + 57920085 57920125 41 TCTCCTCAGGGAGCCCTCCCCAGCCCAGGCACCCCATCCAG TCTCCTCAGGGAGCCCTCCCCAGCACAGGCACCCCATCCAG < 41bp 0.586470163796612 0.89393588976174 0.6051072 0.6588373 prediction 0.614931451930257 Functional Gain - MBD6 ENSG00000166987 CDS Human protein_coding chr12:57920105 chr12:57920109 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_101462 0 0 1 0 1 MBD6 chr12:57920171 5'GT 57920171 Upstream 63bp
chr1 27679961 27679961 1 + C A SARC 27679957 + 27679937 27679977 41 GCCAACCGCCAGCTGGGGGGCACACGCCTCAGCCTGGGCAC GCCAACCGCCAGCTGGGGGGCACAAGCCTCAGCCTGGGCAC < 41bp 0.446051381245773 0.807329857871555 0.20223603 0.4385806 prediction 0.61465971574311 Functional Gain - SYTL1 ENSG00000142765 CDS Human protein_coding chr1:27679957 chr1:27679961 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101469 0 0 1 0 1 SYTL1 chr1:27679979 5'GT 27679979 Upstream 19bp
chr19 50435755 50435755 1 + C A rs1152227 50435751 + 50435731 50435771 41 CCCTCTGGAGCCTCCCTTACCCCCCGGCACCCTCCCCCAAC CCCTCTGGAGCCTCCCTTACCCCCAGGCACCCTCCCCCAAC < 41bp 0.407635798405999 0.807286970950878 0.025120944 0.18485278 prediction 0.614573941901756 Functional Gain - ATF5 ENSG00000169136 CDS Human protein_coding chr19:50435751 chr19:50435755 synonymous SNV . 0 25 hm5C_associated_SNPs_101470 0 0 1 0 1 ATF5 chr19:50435679 3'AG 50435679 Downstream 77bp
chr17 40843276 40843276 1 + C A UCEC 40843272 + 40843252 40843292 41 GGACCGGAGCTGTGTGGACCCTGCCTTGTACTGCAACTGTG GGACCGGAGCTGTGTGGACCCTGCATTGTACTGCAACTGTG < 41bp 0.59837631693208 0.905569045401881 0.082766116 0.50828207 prediction 0.614385456939602 Functional Gain - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40843272 chr17:40843276 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_101476 0 0 0 0 1 CNTNAP1 chr17:40843311 5'GT 40843311 Upstream 36bp
chr3 49042515 49042515 1 + T G rs62621815 49042513 + 49042493 49042533 41 AACTGGGGGCTGCCTTCAATCCTCAGACCAGGAACACCCAT AACTGGGGGCTGCCTTCAATCCGCAGACCAGGAACACCCAT < 41bp 0.490621854154732 0.807165251321305 0.111278206 0.72805786 prediction 0.61433050264261 Functional Gain - P4HTM ENSG00000178467 CDS Human protein_coding chr3:49042513 chr3:49042515 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_101477 0 0 1 0 1 P4HTM chr3:49042603 5'GT 49042603 Upstream 89bp
chr11 64335265 64335265 1 + C A OV 64335261 + 64335241 64335281 41 CCATGGCCGGCCTCGCCATTCTAGCCAACATGCTGGTGCCG CCATGGCCGGCCTCGCCATTCTAGACAACATGCTGGTGCCG < 41bp 0.569653856603351 0.876700281686674 0.2463567 0.20597318 prediction 0.614092850166646 Functional Gain - SLC22A11 ENSG00000168065 CDS Human protein_coding chr11:64335261 chr11:64335265 nonsynonymous SNV 0.461 1 25 hm5C_associated_SNPs_101481 0 0 0 0 1 SLC22A11 chr11:64335285 5'GT 64335285 Upstream 21bp
chr2 95540574 95540574 1 + C A LUAD 95540570 + 95540550 95540590 41 TCACGCAGGACAATCTGTGCCGTGCCCAGCGCGAGCGCCTG TCACGCAGGACAATCTGTGCCGTGACCAGCGCGAGCGCCTG < 41bp 0.444829449626381 0.807023046891183 0.11007491 0.10998753 prediction 0.614046093782366 Functional Gain - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95540570 chr2:95540574 nonsynonymous SNV 0.569 4 25 hm5C_associated_SNPs_101484 0 0 0 0 1 TEKT4 chr2:95540521 3'AG 95540521 Downstream 54bp
chr2 219679662 219679662 1 + C A rs140842830 219679658 + 219679638 219679678 41 TCCAGAAGTACAAGGTGGTCCTGGCCCCGGAGACGGGGGAG TCCAGAAGTACAAGGTGGTCCTGGACCCGGAGACGGGGGAG < 41bp 0.577317340809812 0.884295737079171 0.69849116 0.8458692 prediction 0.613956792538717 Functional Gain - CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219679658 chr2:219679662 nonsynonymous SNV 0.513 1 25 hm5C_associated_SNPs_101487 1 0 1 0 1 CYP27A1 chr2:219679634 3'AG 219679634 Downstream 29bp
chr1 11579887 11579887 1 + T A LUAD 11579883 + 11579863 11579903 41 TCATCGTGCAGCTGCAGGAGCTGCTGCACCACTGGGTCCTG TCATCGTGCAGCTGCAGGAGCTGCAGCACCACTGGGTCCTG < 41bp 0.493099208747503 0.806839232444299 0.09845421 0.30474806 prediction 0.613678464888598 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11579883 chr1:11579887 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_101492 0 0 0 0 1 DISP3 chr1:11579937 5'GT 11579937 Upstream 51bp
chr17 33496943 33496943 1 + T G BLCA 33496940 + 33496920 33496960 41 CGACAGAAAAACTGGCCAAACAGTGTCGCAAGTAAGGGGGC CGACAGAAAAACTGGCCAAACAGGGTCGCAAGTAAGGGGGC < 41bp 0.427996066811883 0.806783413850796 0.2726556 0.8885715 prediction 0.613566827701592 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33496940 chr17:33496943 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_101494 0 0 0 0 2 UNC45B chr17:33496856 3'AG 33496856 Downstream 88bp
chr17 33496943 33496943 1 + T G BLCA 33496940 + 33496920 33496960 41 CGACAGAAAAACTGGCCAAACAGTGTCGCAAGTAAGGGGGC CGACAGAAAAACTGGCCAAACAGGGTCGCAAGTAAGGGGGC < 41bp 0.427996066811883 0.806783413850796 0.2726556 0.8885715 prediction 0.613566827701592 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33496940 chr17:33496943 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_101494 0 0 0 0 2 UNC45B chr17:33496950 5'GT 33496950 Upstream 8bp
chr5 80503117 80503117 1 + C A SARC 80503113 + 80503093 80503133 41 AGTCCTTGTCGGCCATGGAGCTGGCAGAACAGATCACCCTC AGTCCTTGTCGGCCATGGAGCTGGAAGAACAGATCACCCTC < 41bp 0.430206786466656 0.806766713209378 0.38537908 0.25396818 prediction 0.613533426418756 Functional Gain - RASGRF2 ENSG00000113319 CDS Human protein_coding chr5:80503113 chr5:80503117 nonsynonymous SNV 0.941 4 25 hm5C_associated_SNPs_101495 0 0 1 0 2 RASGRF2 chr5:80503065 3'AG 80503065 Downstream 53bp
chr5 80503117 80503117 1 + C A SARC 80503113 + 80503093 80503133 41 AGTCCTTGTCGGCCATGGAGCTGGCAGAACAGATCACCCTC AGTCCTTGTCGGCCATGGAGCTGGAAGAACAGATCACCCTC < 41bp 0.430206786466656 0.806766713209378 0.38537908 0.25396818 prediction 0.613533426418756 Functional Gain - RASGRF2 ENSG00000113319 CDS Human protein_coding chr5:80503113 chr5:80503117 nonsynonymous SNV 0.941 4 25 hm5C_associated_SNPs_101495 0 0 1 0 2 RASGRF2 chr5:80503168 5'GT 80503168 Upstream 52bp
chr3 52453868 52453868 1 + C A STAD 52453864 + 52453844 52453884 41 CGCAGATCTTATCTAGTAAGCTGCCTCAGAGGGGCCAGTCC CGCAGATCTTATCTAGTAAGCTGCATCAGAGGGGCCAGTCC < 41bp 0.403579253057088 0.806764284248445 0.09855431 0.13442111 prediction 0.613528568496889 Functional Gain - PHF7 ENSG00000010318 CDS Human protein_coding chr3:52453864 chr3:52453868 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_101496 0 0 0 0 2 PHF7 chr3:52453849 3'AG 52453849 Downstream 20bp
chr3 52453868 52453868 1 + C A STAD 52453864 + 52453844 52453884 41 CGCAGATCTTATCTAGTAAGCTGCCTCAGAGGGGCCAGTCC CGCAGATCTTATCTAGTAAGCTGCATCAGAGGGGCCAGTCC < 41bp 0.403579253057088 0.806764284248445 0.09855431 0.13442111 prediction 0.613528568496889 Functional Gain - PHF7 ENSG00000010318 CDS Human protein_coding chr3:52453864 chr3:52453868 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_101496 0 0 0 0 2 PHF7 chr3:52453950 5'GT 52453950 Upstream 83bp
chrX 153543624 153543624 1 + T G rs139525582 153543621 + 153543601 153543641 41 GACACCAGGTACTCTACTTTCTCTGAGATATTCAACAAGGA GACACCAGGTACTCTACTTTCTCGGAGATATTCAACAAGGA < 41bp 0.437776087103808 0.806760800969816 0.09512964 0.11499217 prediction 0.613521601939632 Functional Gain - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153543621 chrX:153543624 synonymous SNV . 0 24 hm5C_associated_SNPs_101497 0 0 0 0 1 TKTL1 chrX:153543687 5'GT 153543687 Upstream 64bp
chr7 93221028 93221028 1 + C A rs539101279 93221024 + 93221004 93221044 41 AATCACCGTCTTCTGCGTCGCTCGCGCTGGGAGCTGTAGAC AATCACCGTCTTCTGCGTCGCTCGAGCTGGGAGCTGTAGAC < 41bp 0.476935180619232 0.806735096342527 0.26909116 0.30686095 prediction 0.613470192685054 Functional Gain - CALCR;MIR4652 ENSG00000127928 UTR5 Human protein_coding chr7:93221024 chr7:93221028 . . 0 25 hm5C_associated_SNPs_101498 0 0 1 0 1 CALCR;MIR4652 chr7:93221083 5'GT 93221083 Upstream 56bp
chr1 44137257 44137257 1 + C A rs586339 44137253 + 44137233 44137273 41 AGGAGGATGAGGAGGAAGAACAAGCAGCAGCTGCCTTGGAT AGGAGGATGAGGAGGAAGAACAAGAAGCAGCTGCCTTGGAT < 41bp 0.582850767160834 0.889571710445334 0.25614643 0.49778262 prediction 0.613441886569001 Functional Gain - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44137253 chr1:44137257 nonsynonymous SNV 0.980 0 25 hm5C_associated_SNPs_101500 0 1 0 0 1 KDM4A chr1:44137176 3'AG 44137176 Downstream 82bp
chr1 19029741 19029741 1 + C A UCEC 19029737 + 19029717 19029757 41 ACTCTGACAGCTTCATGAATCCGGCGGCGCCCTCCAACCAC ACTCTGACAGCTTCATGAATCCGGAGGCGCCCTCCAACCAC < 41bp 0.580505670726032 0.887192292364074 0.82186663 0.9311044 prediction 0.613373243276084 Functional Gain - PAX7 ENSG00000009709 CDS Human protein_coding chr1:19029737 chr1:19029741 nonsynonymous SNV 0.169 1 25 hm5C_associated_SNPs_101502 0 0 0 0 1 PAX7 chr1:19029790 5'GT 19029790 Upstream 50bp
chr17 30648026 30648026 1 + C A COAD 30648022 + 30648002 30648042 41 GTGGCTCCGCTTCCACCCGTCGGCCTATCCCCCGTGCCCTC GTGGCTCCGCTTCCACCCGTCGGCATATCCCCCGTGCCCTC < 41bp 0.582074684371312 0.888749598158693 0.28160134 0.46199474 prediction 0.613349827574763 Functional Gain - RHBDL3 ENSG00000141314 CDS Human protein_coding chr17:30648022 chr17:30648026 nonsynonymous SNV 0.242 1 25 hm5C_associated_SNPs_101503 0 0 0 0 1 RHBDL3 chr17:30647977 3'AG 30647977 Downstream 50bp
chr3 113673211 113673211 1 + C A BLCA 113673207 + 113673187 113673227 41 CGACCAGCCCGGGCATGGCACTGCCGGATATGTGGCATCTG CGACCAGCCCGGGCATGGCACTGCAGGATATGTGGCATCTG < 41bp 0.425008309203632 0.806551147288917 0.41356167 0.34350264 prediction 0.613102294577834 Functional Gain - ZDHHC23 ENSG00000184307 CDS Human protein_coding chr3:113673207 chr3:113673211 synonymous SNV . 0 25 hm5C_associated_SNPs_101509 0 0 1 0 1 ZDHHC23 chr3:113673257 5'GT 113673257 Upstream 47bp
chr2 74173946 74173946 1 + T A COAD 74173942 + 74173922 74173962 41 AGACATTTTCCTTTTTGAGCCGCCTGAAAGTACAGCTGGAG AGACATTTTCCTTTTTGAGCCGCCAGAAAGTACAGCTGGAG < 41bp 0.522262917605759 0.828761565046919 0.15995166 0.13477486 prediction 0.612997294882319 Functional Gain - DGUOK ENSG00000114956 CDS Human protein_coding chr2:74173942 chr2:74173946 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_101511 0 0 1 0 1 DGUOK chr2:74174033 5'GT 74174033 Upstream 88bp
chr14 89307486 89307486 1 + C A COAD 89307482 + 89307462 89307502 41 GGCTATCAGAACACCCAGAACCGCCTACACAGCCCGCCCTA GGCTATCAGAACACCCAGAACCGCATACACAGCCCGCCCTA < 41bp 0.405379740988703 0.80648111889823 0.23210773 0.34981406 prediction 0.612962237796459 Functional Gain - TTC8 ENSG00000165533 CDS Human protein_coding chr14:89307482 chr14:89307486 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_101513 0 0 1 0 1 TTC8 chr14:89307540 5'GT 89307540 Upstream 55bp
chr8 66619297 66619297 1 + C A STAD 66619293 + 66619273 66619313 41 CATACCACCACACCCTCCACCTCCCCCACCGCCCCTGCCTC CATACCACCACACCCTCCACCTCCACCACCGCCCCTGCCTC < 41bp 0.389499805375 0.806456881529075 0.051921725 0.94494313 prediction 0.61291376305815 Functional Gain - MTFR1 ENSG00000066855 CDS Human protein_coding chr8:66619293 chr8:66619297 synonymous SNV . 0 25 hm5C_associated_SNPs_101515 0 0 1 0 1 MTFR1 chr8:66619245 3'AG 66619245 Downstream 53bp
chr10 115970640 115970640 1 + C A LUAD 115970636 + 115970616 115970656 41 CAGGAAAGCTTGCTGAACTTCAGGCATCCCTTAGCAAGTAC CAGGAAAGCTTGCTGAACTTCAGGAATCCCTTAGCAAGTAC < 41bp 0.422795339295705 0.806437243335568 0.5256378 0.56888115 prediction 0.612874486671136 Functional Gain - TDRD1 ENSG00000095627 CDS Human protein_coding chr10:115970636 chr10:115970640 nonsynonymous SNV 0.992 0 25 hm5C_associated_SNPs_101516 0 0 0 0 2 TDRD1 chr10:115970619 3'AG 115970619 Downstream 22bp
chr10 115970640 115970640 1 + C A LUAD 115970636 + 115970616 115970656 41 CAGGAAAGCTTGCTGAACTTCAGGCATCCCTTAGCAAGTAC CAGGAAAGCTTGCTGAACTTCAGGAATCCCTTAGCAAGTAC < 41bp 0.422795339295705 0.806437243335568 0.5256378 0.56888115 prediction 0.612874486671136 Functional Gain - TDRD1 ENSG00000095627 CDS Human protein_coding chr10:115970636 chr10:115970640 nonsynonymous SNV 0.992 0 25 hm5C_associated_SNPs_101516 0 0 0 0 2 TDRD1 chr10:115970726 5'GT 115970726 Upstream 87bp
chr11 2417910 2417910 1 + T A STAD 2417906 + 2417886 2417926 41 TCTTCTCCGGGAAGCTGTACCTCATCGGCATTGCTGCCATC TCTTCTCCGGGAAGCTGTACCTCAACGGCATTGCTGCCATC < 41bp 0.490864421674118 0.806433452302828 0.39464164 0.92269784 prediction 0.612866904605657 Functional Gain - CD81 ENSG00000110651 CDS Human protein_coding chr11:2417906 chr11:2417910 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_101517 0 0 1 0 2 CD81 chr11:2417858 3'AG 2417858 Downstream 53bp
chr11 2417910 2417910 1 + T A STAD 2417906 + 2417886 2417926 41 TCTTCTCCGGGAAGCTGTACCTCATCGGCATTGCTGCCATC TCTTCTCCGGGAAGCTGTACCTCAACGGCATTGCTGCCATC < 41bp 0.490864421674118 0.806433452302828 0.39464164 0.92269784 prediction 0.612866904605657 Functional Gain - CD81 ENSG00000110651 CDS Human protein_coding chr11:2417906 chr11:2417910 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_101517 0 0 1 0 2 CD81 chr11:2417944 5'GT 2417944 Upstream 35bp
chr20 61461898 61461898 1 + C A rs73598379 61461894 + 61461874 61461914 41 GAAGGGCAGCATGGGAGACCCCGGCCTTCCAGGCCCCCAGG GAAGGGCAGCATGGGAGACCCCGGACTTCCAGGCCCCCAGG < 41bp 0.575236694806001 0.881664685411306 0.7643945 0.9083357 prediction 0.612855981210609 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61461894 chr20:61461898 synonymous SNV . 0 25 hm5C_associated_SNPs_101518 1 0 1 0 2 COL9A3 chr20:61461869 3'AG 61461869 Downstream 30bp
chr20 61461898 61461898 1 + C A rs73598379 61461894 + 61461874 61461914 41 GAAGGGCAGCATGGGAGACCCCGGCCTTCCAGGCCCCCAGG GAAGGGCAGCATGGGAGACCCCGGACTTCCAGGCCCCCAGG < 41bp 0.575236694806001 0.881664685411306 0.7643945 0.9083357 prediction 0.612855981210609 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61461894 chr20:61461898 synonymous SNV . 0 25 hm5C_associated_SNPs_101518 1 0 1 0 2 COL9A3 chr20:61461940 5'GT 61461940 Upstream 43bp
chr2 1507739 1507739 1 + C A LUSC 1507735 + 1507715 1507755 41 GGCAGATGTGAACGAGTGTGCAGACGGTGCCCACCCCCCCT GGCAGATGTGAACGAGTGTGCAGAAGGTGCCCACCCCCCCT < 41bp 0.446621147886428 0.806353139820865 0.697536 0.8363071 prediction 0.61270627964173 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1507735 chr2:1507739 nonsynonymous SNV 0.012 1 25 hm5C_associated_SNPs_101523 0 0 0 0 1 TPO chr2:1507720 3'AG 1507720 Downstream 20bp
chr19 51630383 51630383 1 + C A COAD 51630379 + 51630359 51630399 41 TTGATGCAGTTGACAGCAATCCCCCTGCCAGGCTGAGCCTG TTGATGCAGTTGACAGCAATCCCCATGCCAGGCTGAGCCTG < 41bp 0.395966403720157 0.80634670697389 0.19166458 0.2750852 prediction 0.612693413947779 Functional Gain - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51630379 chr19:51630383 nonsynonymous SNV 0.226 3 25 hm5C_associated_SNPs_101524 0 0 0 0 1 SIGLEC9 chr19:51630287 3'AG 51630287 Downstream 97bp
chr22 26747058 26747058 1 + C A LUAD 26747054 + 26747034 26747074 41 CCCCGGAGAGGTGGATCACTCGACCCGCTTAATTTCGGATC CCCCGGAGAGGTGGATCACTCGACACGCTTAATTTCGGATC < 41bp 0.419448332440625 0.806342270869035 0.34193748 0.48575458 prediction 0.612684541738071 Functional Gain - SEZ6L ENSG00000100095 CDS Human protein_coding chr22:26747054 chr22:26747058 synonymous SNV . 0 25 hm5C_associated_SNPs_101526 0 0 0 0 1 SEZ6L chr22:26747018 3'AG 26747018 Downstream 41bp
chr4 178887872 178887872 1 + C A UCEC 178887868 + 178887848 178887888 41 GGCCCAATCCTGGCTCACTGCAACCTCTGCCTCCTGGGCTC GGCCCAATCCTGGCTCACTGCAACATCTGCCTCCTGGGCTC < 41bp 0.438086534161829 0.80632248762357 0.21046245 0.2128855 prediction 0.612644975247139 Functional Gain - LINC01098 ENSG00000231171 CDS Human lincRNA chr4:178887868 chr4:178887872 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_101528 0 0 0 0 1 LINC01098 chr4:178887932 5'GT 178887932 Upstream 61bp
chr16 72046117 72046117 1 + C A COAD 72046113 + 72046093 72046133 41 AGACTGGCTGTTCGCTTCACCTCCCTGGGGCTCCTTCCACG AGACTGGCTGTTCGCTTCACCTCCATGGGGCTCCTTCCACG < 41bp 0.60408551674055 0.910393685683479 0.32563323 0.9661863 prediction 0.612616337885859 Functional Gain - DHODH ENSG00000102967 CDS Human protein_coding chr16:72046113 chr16:72046117 nonsynonymous SNV 0.848 2 25 hm5C_associated_SNPs_101530 0 0 1 0 1 DHODH chr16:72046161 5'GT 72046161 Upstream 45bp
chr17 6913416 6913416 1 + T A LUAD 6913412 + 6913392 6913432 41 GCCTGTCTTCAAATGGCCATCTCATGGCATCTGAGTCGCCG GCCTGTCTTCAAATGGCCATCTCAAGGCATCTGAGTCGCCG < 41bp 0.485697879137518 0.8062606891895 0.32778734 0.26266775 prediction 0.612521378379 Functional Gain - ALOX12 ENSG00000108839;ENSG00000215067 CDS Human protein_coding chr17:6913412 chr17:6913416 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_101532 0 0 0 0 1 ALOX12 chr17:6913445 5'GT 6913445 Upstream 30bp
chr17 73515125 73515125 1 + C A SKCM 73515121 + 73515101 73515141 41 GTTATGTGGTTCGACGATTCCAACCAAGGTAAATCCCCTTC GTTATGTGGTTCGACGATTCCAACAAAGGTAAATCCCCTTC < 41bp 0.394968246968759 0.806259138005229 0.048036873 0.03693059 prediction 0.612518276010457 Functional Gain - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73515121 chr17:73515125 nonsynonymous SNV 0.972 2 25 hm5C_associated_SNPs_101533 0 0 1 0 3 TSEN54 chr17:73515076 3'AG 73515076 Downstream 50bp
chr17 73515125 73515125 1 + C A SKCM 73515121 + 73515101 73515141 41 GTTATGTGGTTCGACGATTCCAACCAAGGTAAATCCCCTTC GTTATGTGGTTCGACGATTCCAACAAAGGTAAATCCCCTTC < 41bp 0.394968246968759 0.806259138005229 0.048036873 0.03693059 prediction 0.612518276010457 Functional Gain - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73515121 chr17:73515125 nonsynonymous SNV 0.972 2 25 hm5C_associated_SNPs_101533 0 0 1 0 3 TSEN54 chr17:73515084 3'AG 73515084 Downstream 42bp
chr17 73515125 73515125 1 + C A SKCM 73515121 + 73515101 73515141 41 GTTATGTGGTTCGACGATTCCAACCAAGGTAAATCCCCTTC GTTATGTGGTTCGACGATTCCAACAAAGGTAAATCCCCTTC < 41bp 0.394968246968759 0.806259138005229 0.048036873 0.03693059 prediction 0.612518276010457 Functional Gain - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73515121 chr17:73515125 nonsynonymous SNV 0.972 2 25 hm5C_associated_SNPs_101533 0 0 1 0 3 TSEN54 chr17:73515128 5'GT 73515128 Upstream 4bp
chr16 24920331 24920331 1 + C A UCEC 24920327 + 24920307 24920347 41 GTCCTGGTGAAGAGCATTCACTACCTCTACTTCTCCATGAT GTCCTGGTGAAGAGCATTCACTACATCTACTTCTCCATGAT < 41bp 0.389136334798039 0.806256758462267 0.05625111 0.35659677 prediction 0.612513516924534 Functional Gain - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24920327 chr16:24920331 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_101534 0 0 0 0 1 SLC5A11 chr16:24920417 5'GT 24920417 Upstream 87bp
chr9 95870005 95870005 1 + C A rs34200537 95870001 + 95869981 95870021 41 GCAGGACACGCCTTTCCTGACAGGCCATGGGCGCTTGAGTG GCAGGACACGCCTTTCCTGACAGGACATGGGCGCTTGAGTG < 41bp 0.578859148655338 0.885079418471851 0.38807636 0.45212406 prediction 0.612440539633026 Functional Gain - CARD19 ENSG00000165233 CDS Human protein_coding chr9:95870001 chr9:95870005 synonymous SNV . 0 25 hm5C_associated_SNPs_101540 0 0 1 0 2 CARD19 chr9:95869956 3'AG 95869956 Downstream 50bp
chr9 95870005 95870005 1 + C A rs34200537 95870001 + 95869981 95870021 41 GCAGGACACGCCTTTCCTGACAGGCCATGGGCGCTTGAGTG GCAGGACACGCCTTTCCTGACAGGACATGGGCGCTTGAGTG < 41bp 0.578859148655338 0.885079418471851 0.38807636 0.45212406 prediction 0.612440539633026 Functional Gain - CARD19 ENSG00000165233 CDS Human protein_coding chr9:95870001 chr9:95870005 synonymous SNV . 0 25 hm5C_associated_SNPs_101540 0 0 1 0 2 CARD19 chr9:95870098 5'GT 95870098 Upstream 94bp
chr5 161495079 161495079 1 + T G LUSC 161495076 + 161495056 161495096 41 TGTATTTTCACAGAAAATGACGGTGTGGATTCTGCTCCTGC TGTATTTTCACAGAAAATGACGGGGTGGATTCTGCTCCTGC < 41bp 0.452110239473374 0.806215402562162 0.8566101 0.926412 prediction 0.612430805124324 Functional Gain - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161495076 chr5:161495079 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_101541 0 0 0 0 1 GABRG2 chr5:161495112 5'GT 161495112 Upstream 34bp
chr4 3494500 3494500 1 + C A COAD 3494496 + 3494476 3494516 41 TCTGTCTCAGGGGATGACCGCAGCCTGTCCAGCTCATCCTC TCTGTCTCAGGGGATGACCGCAGCATGTCCAGCTCATCCTC < 41bp 0.426085256378271 0.806140639309479 0.6684319 0.89111763 prediction 0.612281278618958 Functional Gain - DOK7 ENSG00000175920 CDS Human protein_coding chr4:3494496 chr4:3494500 nonsynonymous SNV 0.899 0 25 hm5C_associated_SNPs_101544 0 0 0 0 1 DOK7 chr4:3494486 3'AG 3494486 Downstream 15bp
chr5 179018717 179018717 1 + T A LIHC 179018713 + 179018693 179018733 41 TGTACAGTGATGTGTGGAAGCAGCTAAAAGAGGAGAAGAAA TGTACAGTGATGTGTGGAAGCAGCAAAAAGAGGAGAAGAAA < 41bp 0.497797249625955 0.806121283548424 0.8792466 0.43274826 prediction 0.612242567096847 Functional Gain - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179018713 chr5:179018717 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_101545 0 0 1 0 2 RUFY1 chr5:179018626 3'AG 179018626 Downstream 92bp
chr5 179018717 179018717 1 + T A LIHC 179018713 + 179018693 179018733 41 TGTACAGTGATGTGTGGAAGCAGCTAAAAGAGGAGAAGAAA TGTACAGTGATGTGTGGAAGCAGCAAAAAGAGGAGAAGAAA < 41bp 0.497797249625955 0.806121283548424 0.8792466 0.43274826 prediction 0.612242567096847 Functional Gain - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179018713 chr5:179018717 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_101545 0 0 1 0 2 RUFY1 chr5:179018742 5'GT 179018742 Upstream 26bp
chr4 86491812 86491812 1 + T G LUAD 86491809 + 86491789 86491829 41 TTGTCAAGACTTGGCATACTCGCTGGTTTGTGCTCAAGGGG TTGTCAAGACTTGGCATACTCGCGGGTTTGTGCTCAAGGGG < 41bp 0.540554785720696 0.846672487299637 0.0680809 0.8788959 prediction 0.612235403157882 Functional Gain - ARHGAP24 ENSG00000138639 CDS Human protein_coding chr4:86491809 chr4:86491812 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_101546 0 0 0 0 1 ARHGAP24 chr4:86491874 5'GT 86491874 Upstream 63bp
chr3 186571989 186571989 1 - G T UCEC 186571993 - 186571973 186572013 41 TACTCCGGTTTCACCGATGTCTCCCTTAGGACCAATAAGAC TACTCCGGTTTCACCGATGTCTCCATTAGGACCAATAAGAC < 41bp 0.408496657430951 0.806072371567632 0.009301245 0.9576913 prediction 0.612144743135264 Functional Gain - ADIPOQ ENSG00000181092 CDS Human antisense chr3:186571993 chr3:186571989 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_101551 0 0 0 0 1 ADIPOQ-AS1 chr3:186571922 5'GT 186571922 Upstream 68bp
chr13 45952672 45952672 1 + T G rs199665813 45952669 + 45952649 45952689 41 TGCCTTCTGCCCTTAGGCTCCGGTAGATTGCAAATGACCTG TGCCTTCTGCCCTTAGGCTCCGGGAGATTGCAAATGACCTG < 41bp 0.465594873429631 0.806052120577375 0.306157 0.7372124 prediction 0.61210424115475 Functional Gain - TPT1-AS1 ENSG00000170919 ncRNA_exonic Human processed_transcript chr13:45952669 chr13:45952672 . . 0 24 hm5C_associated_SNPs_101553 0 0 1 0 1 TPT1-AS1 chr13:45952665 3'AG 45952665 Downstream 8bp
chr1 21762585 21762585 1 + C A rs188127427 21762581 + 21762561 21762601 41 AATCCCTGTGGCTACAGGAGCAGGCGGCCCTGGAGACAGAG AATCCCTGTGGCTACAGGAGCAGGAGGCCCTGGAGACAGAG < 41bp 0.485791830901029 0.806022007793705 0.92631567 0.9237658 prediction 0.61204401558741 Functional Gain - ECE1;NBPF3 ENSG00000186543 ncRNA_exonic Human unprocessed_pseudogene chr1:21762581 chr1:21762585 . . 0 25 hm5C_associated_SNPs_101555 0 0 0 0 1 ECE1;NBPF3 chr1:21762560 3'AG 21762560 Downstream 26bp
chr4 2877668 2877668 1 + T G LUSC 2877665 + 2877645 2877685 41 GAATGGTGATTCTCGTGCTGCGGTGGTGACCTCACCACCCC GAATGGTGATTCTCGTGCTGCGGGGGTGACCTCACCACCCC < 41bp 0.451403251276171 0.805944303549838 0.5425929 0.92714626 prediction 0.611888607099676 Functional Gain - ADD1 ENSG00000087274 CDS Human protein_coding chr4:2877665 chr4:2877668 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_101558 0 0 1 0 1 ADD1 chr4:2877623 3'AG 2877623 Downstream 46bp
chr2 98996660 98996660 1 + C A rs575326068 98996656 + 98996636 98996676 41 AGGCTGTCGCGCCTCATCTTCTTGCTGCGCAGGTGGGCTGC AGGCTGTCGCGCCTCATCTTCTTGATGCGCAGGTGGGCTGC < 41bp 0.409551784114892 0.805926364706475 0.16327631 0.32633197 prediction 0.611852729412949 Functional Gain - CNGA3 ENSG00000144191 CDS Human protein_coding chr2:98996656 chr2:98996660 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_101559 0 0 0 0 1 CNGA3 chr2:98996638 3'AG 98996638 Downstream 23bp
chr17 64876776 64876776 1 + T G LUAD 64876773 + 64876753 64876793 41 ACACATCCGTCCCCACCGGACGATACTGGCCTTTGTCTCTG ACACATCCGTCCCCACCGGACGAGACTGGCCTTTGTCTCTG < 41bp 0.432946529770167 0.805903519411781 0.12640044 0.2616573 prediction 0.611807038823562 Functional Gain - CACNG5 ENSG00000075429 CDS Human protein_coding chr17:64876773 chr17:64876776 nonsynonymous SNV 0.942 2 24 hm5C_associated_SNPs_101560 0 0 0 0 1 CACNG5 chr17:64876814 5'GT 64876814 Upstream 39bp
chr1 202096944 202096944 1 + C A STAD 202096940 + 202096920 202096960 41 CGCTTCCACGTGGCCACCAGCACCCTGCCCAAGGTGAGGCC CGCTTCCACGTGGCCACCAGCACCATGCCCAAGGTGAGGCC < 41bp 0.40176930159238 0.805818559406007 0.26311362 0.35515633 prediction 0.611637118812014 Functional Gain - GPR37L1 ENSG00000170075 CDS Human protein_coding chr1:202096940 chr1:202096944 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_101564 0 0 0 0 1 GPR37L1 chr1:202096869 3'AG 202096869 Downstream 76bp
chr19 36034660 36034660 1 + C A LUAD 36034656 + 36034636 36034676 41 CGCCCAGCCTGCCCCCTACTCAGCCATCAAGGAGGCTGTAA CGCCCAGCCTGCCCCCTACTCAGCAATCAAGGAGGCTGTAA < 41bp 0.596895710543188 0.902679738734284 0.41405287 0.32950485 prediction 0.611568056382191 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36034656 chr19:36034660 synonymous SNV . 0 25 hm5C_associated_SNPs_101567 0 0 0 0 2 GAPDHS chr19:36034567 3'AG 36034567 Downstream 94bp
chr19 36034660 36034660 1 + C A LUAD 36034656 + 36034636 36034676 41 CGCCCAGCCTGCCCCCTACTCAGCCATCAAGGAGGCTGTAA CGCCCAGCCTGCCCCCTACTCAGCAATCAAGGAGGCTGTAA < 41bp 0.596895710543188 0.902679738734284 0.41405287 0.32950485 prediction 0.611568056382191 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36034656 chr19:36034660 synonymous SNV . 0 25 hm5C_associated_SNPs_101567 0 0 0 0 2 GAPDHS chr19:36034729 5'GT 36034729 Upstream 70bp
chr15 25477442 25477442 1 + C A LUAD 25477438 + 25477418 25477458 41 GCCCCCGATGCGCTGAAGCTCAAGCCTTTCCTGGCACCCTG GCCCCCGATGCGCTGAAGCTCAAGACTTTCCTGGCACCCTG < 41bp 0.515624497625685 0.821384262553983 0.859258 0.8778834 prediction 0.611519529856596 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25477438 chr15:25477442 . . 0 25 hm5C_associated_SNPs_101568 0 0 0 0 2 SNHG14 chr15:25477347 3'AG 25477347 Downstream 96bp
chr15 25477442 25477442 1 + C A LUAD 25477438 + 25477418 25477458 41 GCCCCCGATGCGCTGAAGCTCAAGCCTTTCCTGGCACCCTG GCCCCCGATGCGCTGAAGCTCAAGACTTTCCTGGCACCCTG < 41bp 0.515624497625685 0.821384262553983 0.859258 0.8778834 prediction 0.611519529856596 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25477438 chr15:25477442 . . 0 25 hm5C_associated_SNPs_101568 0 0 0 0 2 SNHG14 chr15:25477478 5'GT 25477478 Upstream 37bp
chr9 407023 407023 1 + C A GBM 407019 + 406999 407039 41 CGCCAGCAGCACTTCCTCACCGGGCTCCTCTTCACAGAACT CGCCAGCAGCACTTCCTCACCGGGATCCTCTTCACAGAACT < 41bp 0.441457073010757 0.805755528870977 0.8167193 0.76246727 prediction 0.611511057741955 Functional Gain - DOCK8 ENSG00000107099 CDS Human protein_coding chr9:407019 chr9:407023 nonsynonymous SNV 0.392 2 25 hm5C_associated_SNPs_101569 0 0 0 0 1 DOCK8 chr9:406930 3'AG 406930 Downstream 94bp
chr15 25492365 25492365 1 + C A LUSC 25492361 + 25492341 25492381 41 GTTCCTGGGCCAGTGGCCATCAGCCTGTTGCCCAGCCCCTG GTTCCTGGGCCAGTGGCCATCAGCATGTTGCCCAGCCCCTG < 41bp 0.526660745465269 0.832361894986888 0.70977473 0.8030814 prediction 0.611402299043237 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25492361 chr15:25492365 . . 0 25 hm5C_associated_SNPs_101572 0 0 0 0 2 SNHG14 chr15:25492304 3'AG 25492304 Downstream 62bp
chr15 25492365 25492365 1 + C A LUSC 25492361 + 25492341 25492381 41 GTTCCTGGGCCAGTGGCCATCAGCCTGTTGCCCAGCCCCTG GTTCCTGGGCCAGTGGCCATCAGCATGTTGCCCAGCCCCTG < 41bp 0.526660745465269 0.832361894986888 0.70977473 0.8030814 prediction 0.611402299043237 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25492361 chr15:25492365 . . 0 25 hm5C_associated_SNPs_101572 0 0 0 0 2 SNHG14 chr15:25492435 5'GT 25492435 Upstream 71bp
chr5 139201548 139201548 1 + C A SARC 139201544 + 139201524 139201564 41 GAGCGGGTCCTCACACACTTCTCCCGCCGGTACTGCCAGTG GAGCGGGTCCTCACACACTTCTCCAGCCGGTACTGCCAGTG < 41bp 0.36938453460765 0.805646700355 0.05566305 0.9115047 prediction 0.611293400709999 Functional Gain - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139201544 chr5:139201548 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_101578 0 0 0 0 2 PSD2 chr5:139201478 3'AG 139201478 Downstream 71bp
chr5 139201548 139201548 1 + C A SARC 139201544 + 139201524 139201564 41 GAGCGGGTCCTCACACACTTCTCCCGCCGGTACTGCCAGTG GAGCGGGTCCTCACACACTTCTCCAGCCGGTACTGCCAGTG < 41bp 0.36938453460765 0.805646700355 0.05566305 0.9115047 prediction 0.611293400709999 Functional Gain - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139201544 chr5:139201548 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_101578 0 0 0 0 2 PSD2 chr5:139201590 5'GT 139201590 Upstream 43bp
chr1 11769511 11769511 1 + C A UCEC 11769507 + 11769487 11769527 41 TCCCTGATCCTGCCCGTCACCTCCCTGCGGCCCCAGGTAAG TCCCTGATCCTGCCCGTCACCTCCATGCGGCCCCAGGTAAG < 41bp 0.384892287155141 0.805642542104951 0.116737306 0.95285654 prediction 0.611285084209901 Functional Gain - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11769507 chr1:11769511 nonsynonymous SNV 0.316 2 25 hm5C_associated_SNPs_101579 0 0 0 0 1 DRAXIN chr1:11769522 5'GT 11769522 Upstream 12bp
chr12 29423485 29423485 1 + C A UCEC 29423481 + 29423461 29423501 41 ATGGAGAAGCTGTTTCGCACCAGCCCAGACCTGAAAGTCAT ATGGAGAAGCTGTTTCGCACCAGCACAGACCTGAAAGTCAT < 41bp 0.415437486665473 0.805620867021721 0.18748492 0.14679772 prediction 0.611241734043442 Functional Gain - FAR2 ENSG00000064763 CDS Human protein_coding chr12:29423481 chr12:29423485 nonsynonymous SNV 0.746 4 25 hm5C_associated_SNPs_101581 0 0 0 0 1 FAR2 chr12:29423571 5'GT 29423571 Upstream 87bp
chr16 30095042 30095042 1 + C A SKCM 30095038 + 30095018 30095058 41 CTGGATCAGATTCGGACAATCGACCGAAAGCAAGAGGTGCC CTGGATCAGATTCGGACAATCGACAGAAAGCAAGAGGTGCC < 41bp 0.593391804244331 0.898916024512363 0.29023218 0.40809506 prediction 0.611048440536065 Functional Gain - PPP4C ENSG00000149923 CDS Human protein_coding chr16:30095038 chr16:30095042 synonymous SNV . 0 25 hm5C_associated_SNPs_101584 0 0 1 0 2 PPP4C chr16:30094976 3'AG 30094976 Downstream 67bp
chr16 30095042 30095042 1 + C A SKCM 30095038 + 30095018 30095058 41 CTGGATCAGATTCGGACAATCGACCGAAAGCAAGAGGTGCC CTGGATCAGATTCGGACAATCGACAGAAAGCAAGAGGTGCC < 41bp 0.593391804244331 0.898916024512363 0.29023218 0.40809506 prediction 0.611048440536065 Functional Gain - PPP4C ENSG00000149923 CDS Human protein_coding chr16:30095038 chr16:30095042 synonymous SNV . 0 25 hm5C_associated_SNPs_101584 0 0 1 0 2 PPP4C chr16:30095102 5'GT 30095102 Upstream 61bp
chr19 50302705 50302705 1 + C A UCEC 50302701 + 50302681 50302721 41 ACGCTGGCCAGCTCCGAGTTCTCCCATGAAGCCGTCAAGAC ACGCTGGCCAGCTCCGAGTTCTCCAATGAAGCCGTCAAGAC < 41bp 0.370797527426548 0.805523678252546 0.049157858 0.9671363 prediction 0.611047356505092 Functional Gain - AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50302701 chr19:50302705 nonsynonymous SNV 0.967 3 25 hm5C_associated_SNPs_101585 0 0 1 0 1 AP2A1 chr19:50302752 5'GT 50302752 Upstream 48bp
chr10 124057314 124057314 1 + C A UCEC 124057310 + 124057290 124057330 41 GATGTGATGATAGCCAGACTCAAGCCAAGCACCATCAAGAA GATGTGATGATAGCCAGACTCAAGACAAGCACCATCAAGAA < 41bp 0.590180657228053 0.895703823760872 0.07606432 0.12942767 prediction 0.611046333065638 Functional Gain - BTBD16 ENSG00000138152 CDS Human protein_coding chr10:124057310 chr10:124057314 nonsynonymous SNV 0.088 1 25 hm5C_associated_SNPs_101586 0 0 0 0 2 BTBD16 chr10:124057283 3'AG 124057283 Downstream 32bp
chr10 124057314 124057314 1 + C A UCEC 124057310 + 124057290 124057330 41 GATGTGATGATAGCCAGACTCAAGCCAAGCACCATCAAGAA GATGTGATGATAGCCAGACTCAAGACAAGCACCATCAAGAA < 41bp 0.590180657228053 0.895703823760872 0.07606432 0.12942767 prediction 0.611046333065638 Functional Gain - BTBD16 ENSG00000138152 CDS Human protein_coding chr10:124057310 chr10:124057314 nonsynonymous SNV 0.088 1 25 hm5C_associated_SNPs_101586 0 0 0 0 2 BTBD16 chr10:124057352 5'GT 124057352 Upstream 39bp
chr2 242157251 242157251 1 + T G LUSC 242157249 + 242157229 242157269 41 GTGGCCGAGCGCGCCCAGGACATCGGCATCTGGTTCCACAT GTGGCCGAGCGCGCCCAGGACAGCGGCATCTGGTTCCACAT < 41bp 0.467746483114714 0.805457145617965 0.40223414 0.7257672 prediction 0.610914291235929 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242157249 chr2:242157251 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_101587 0 0 0 0 1 ANO7 chr2:242157306 5'GT 242157306 Upstream 56bp
chr15 76630195 76630195 1 + C A LUSC 76630191 + 76630171 76630211 41 GTTTATCCTGCGGGTGTCGCCCGACCTCGAGTGGCACGCGG GTTTATCCTGCGGGTGTCGCCCGAACTCGAGTGGCACGCGG < 41bp 0.438402947113194 0.805273699090182 0.7644062 0.6409365 prediction 0.610547398180365 Functional Gain - ISL2 ENSG00000159556 CDS Human protein_coding chr15:76630191 chr15:76630195 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_101595 0 0 1 0 1 ISL2 chr15:76630119 3'AG 76630119 Downstream 77bp
chr8 2005503 2005503 1 + C A STAD 2005499 + 2005479 2005519 41 GTGGCCGCCTATGGTGAGGCCAAGCGACAGCGCTTCCTCAG GTGGCCGCCTATGGTGAGGCCAAGAGACAGCGCTTCCTCAG < 41bp 0.575857228637566 0.881110741250479 0.6721337 0.45141912 prediction 0.610507025225827 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2005499 chr8:2005503 synonymous SNV . 0 25 hm5C_associated_SNPs_101596 0 0 0 0 1 MYOM2 chr8:2005466 3'AG 2005466 Downstream 38bp
chr20 58348442 58348442 1 + C A LUSC 58348438 + 58348418 58348458 41 CGCATCTCACCACGGTCCACCGGCCTCTTCCCCCAAGCCGC CGCATCTCACCACGGTCCACCGGCATCTTCCCCCAAGCCGC < 41bp 0.411090790585727 0.805225930509385 0.18493754 0.15410027 prediction 0.610451861018771 Functional Gain - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58348438 chr20:58348442 nonsynonymous SNV 0.986 2 25 hm5C_associated_SNPs_101597 0 0 0 0 1 PHACTR3 chr20:58348508 5'GT 58348508 Upstream 67bp
chr1 156128195 156128195 1 + T G UCEC 156128193 + 156128173 156128213 41 CCTCAGACACAGTGTTTCAACTTCATCCGTGTCCTGGTTTC CCTCAGACACAGTGTTTCAACTGCATCCGTGTCCTGGTTTC < 41bp 0.493605053240099 0.80519488711536 0.032844275 0.053247362 prediction 0.61038977423072 Functional Gain - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156128193 chr1:156128195 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_101600 0 0 0 0 2 SEMA4A chr1:156128179 3'AG 156128179 Downstream 17bp
chr1 156128195 156128195 1 + T G UCEC 156128193 + 156128173 156128213 41 CCTCAGACACAGTGTTTCAACTTCATCCGTGTCCTGGTTTC CCTCAGACACAGTGTTTCAACTGCATCCGTGTCCTGGTTTC < 41bp 0.493605053240099 0.80519488711536 0.032844275 0.053247362 prediction 0.61038977423072 Functional Gain - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156128193 chr1:156128195 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_101600 0 0 0 0 2 SEMA4A chr1:156128277 5'GT 156128277 Upstream 83bp
chr3 33415165 33415165 1 + T G GBM 33415163 + 33415143 33415183 41 CTGGTGCGAGGTTGTCGAGGCCTGAAAGCCCTGCTCCTGAG CTGGTGCGAGGTTGTCGAGGCCGGAAAGCCCTGCTCCTGAG < 41bp 0.488375433372162 0.805166457171065 0.33282596 0.7938878 prediction 0.61033291434213 Functional Gain - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33415163 chr3:33415165 nonsynonymous SNV 0.991 2 23 hm5C_associated_SNPs_101602 0 0 0 0 2 FBXL2 chr3:33415070 3'AG 33415070 Downstream 96bp
chr3 33415165 33415165 1 + T G GBM 33415163 + 33415143 33415183 41 CTGGTGCGAGGTTGTCGAGGCCTGAAAGCCCTGCTCCTGAG CTGGTGCGAGGTTGTCGAGGCCGGAAAGCCCTGCTCCTGAG < 41bp 0.488375433372162 0.805166457171065 0.33282596 0.7938878 prediction 0.61033291434213 Functional Gain - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33415163 chr3:33415165 nonsynonymous SNV 0.991 2 23 hm5C_associated_SNPs_101602 0 0 0 0 2 FBXL2 chr3:33415196 5'GT 33415196 Upstream 32bp
chr3 15477870 15477870 1 + T G OV 15477868 + 15477848 15477888 41 GAGCTGAGGGCTGAAGTTGACATTATTGAACAAATGAGCAG GAGCTGAGGGCTGAAGTTGACAGTATTGAACAAATGAGCAG < 41bp 0.517220982170958 0.822376533020962 0.18499506 0.39971715 prediction 0.610311101700009 Functional Gain - EAF1 ENSG00000144597 CDS Human protein_coding chr3:15477868 chr3:15477870 nonsynonymous SNV 0.786 1 23 hm5C_associated_SNPs_101603 0 0 1 0 1 EAF1 chr3:15477849 3'AG 15477849 Downstream 22bp
chr6 43034801 43034801 1 + T A STAD 43034797 + 43034777 43034817 41 GCCCTTAGCATCCGGGAGAGCACCTTGGGACCTGACCATCC GCCCTTAGCATCCGGGAGAGCACCATGGGACCTGACCATCC < 41bp 0.521201088673144 0.826348305527719 0.51377743 0.78138244 prediction 0.61029443370915 Functional Gain - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43034797 chr6:43034801 nonsynonymous SNV 0.980 4 25 hm5C_associated_SNPs_101604 0 0 1 0 2 KLC4 chr6:43034734 3'AG 43034734 Downstream 68bp
chr6 43034801 43034801 1 + T A STAD 43034797 + 43034777 43034817 41 GCCCTTAGCATCCGGGAGAGCACCTTGGGACCTGACCATCC GCCCTTAGCATCCGGGAGAGCACCATGGGACCTGACCATCC < 41bp 0.521201088673144 0.826348305527719 0.51377743 0.78138244 prediction 0.61029443370915 Functional Gain - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43034797 chr6:43034801 nonsynonymous SNV 0.980 4 25 hm5C_associated_SNPs_101604 0 0 1 0 2 KLC4 chr6:43034821 5'GT 43034821 Upstream 21bp
chr15 45052067 45052067 1 + C A SKCM 45052063 + 45052043 45052083 41 AGGGAAATGCAGGACACTCTCTGCCCAGGTATCAGTGGGTA AGGGAAATGCAGGACACTCTCTGCACAGGTATCAGTGGGTA < 41bp 0.603473554696452 0.908579721670247 0.068246424 0.19605756 prediction 0.61021233394759 Functional Gain - TRIM69 ENSG00000185880 CDS Human protein_coding chr15:45052063 chr15:45052067 nonsynonymous SNV 0.952 1 25 hm5C_associated_SNPs_101606 0 0 0 0 1 TRIM69 chr15:45052070 5'GT 45052070 Upstream 4bp
chr16 68330375 68330375 1 + T G ACC 68330372 + 68330352 68330392 41 GCCTGTCTGTTGTTGGACAGCTCTACCTCCGCTGGAAGGAG GCCTGTCTGTTGTTGGACAGCTCGACCTCCGCTGGAAGGAG < 41bp 0.571320299474037 0.876415468600221 0.2333658 0.06359398 prediction 0.610190338252368 Functional Gain - SLC7A6 ENSG00000103064 CDS Human protein_coding chr16:68330372 chr16:68330375 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_101607 0 0 1 0 1 SLC7A6 chr16:68330416 5'GT 68330416 Upstream 42bp
chr11 6292657 6292657 1 + C A LUAD 6292653 + 6292633 6292673 41 CTGGAAACTTGCGCTCGCTGCTGCCCCCGGCCTCCACGAGC CTGGAAACTTGCGCTCGCTGCTGCACCCGGCCTCCACGAGC < 41bp 0.407043957851299 0.80505664851818 0.15940982 0.23984227 prediction 0.61011329703636 Functional Gain - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6292653 chr11:6292657 nonsynonymous SNV 0.813 0 25 hm5C_associated_SNPs_101608 0 0 0 0 1 CCKBR chr11:6292627 3'AG 6292627 Downstream 31bp
chr1 156845383 156845383 1 + C A UCEC 156845379 + 156845359 156845399 41 TTCATGACATTGGGTGGCAGCTCCCTGTCCCCCACCGAGGG TTCATGACATTGGGTGGCAGCTCCATGTCCCCCACCGAGGG < 41bp 0.38034999952083 0.805008696105734 0.11995509 0.95046926 prediction 0.610017392211468 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845379 chr1:156845383 nonsynonymous SNV 0.278 1 25 hm5C_associated_SNPs_101611 0 0 0 0 2 NTRK1 chr1:156845312 3'AG 156845312 Downstream 72bp
chr1 156845383 156845383 1 + C A UCEC 156845379 + 156845359 156845399 41 TTCATGACATTGGGTGGCAGCTCCCTGTCCCCCACCGAGGG TTCATGACATTGGGTGGCAGCTCCATGTCCCCCACCGAGGG < 41bp 0.38034999952083 0.805008696105734 0.11995509 0.95046926 prediction 0.610017392211468 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845379 chr1:156845383 nonsynonymous SNV 0.278 1 25 hm5C_associated_SNPs_101611 0 0 0 0 2 NTRK1 chr1:156845458 5'GT 156845458 Upstream 76bp
chr5 169018164 169018164 1 + T A BRCA 169018160 + 169018140 169018180 41 TTAAACAACAACAAAAAATGCACCTGGAGAAATTGGAAGAA TTAAACAACAACAAAAAATGCACCAGGAGAAATTGGAAGAA < 41bp 0.486258056719165 0.804915652719695 0.6931833 0.56793183 prediction 0.60983130543939 Functional Gain - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169018160 chr5:169018164 nonsynonymous SNV 0.023 3 25 hm5C_associated_SNPs_101617 0 0 1 0 2 SPDL1 chr5:169018207 5'GT 169018207 Upstream 44bp
chr5 169018164 169018164 1 + T A BRCA 169018160 + 169018140 169018180 41 TTAAACAACAACAAAAAATGCACCTGGAGAAATTGGAAGAA TTAAACAACAACAAAAAATGCACCAGGAGAAATTGGAAGAA < 41bp 0.486258056719165 0.804915652719695 0.6931833 0.56793183 prediction 0.60983130543939 Functional Gain - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169018160 chr5:169018164 nonsynonymous SNV 0.023 3 25 hm5C_associated_SNPs_101617 0 0 1 0 2 SPDL1 chr5:169018228 5'GT 169018228 Upstream 65bp
chr1 75606727 75606727 1 + C A LUSC 75606723 + 75606703 75606743 41 TCCTGCAGTGTTTGCAGAACCTCCCTAGGAAGGCACACCAG TCCTGCAGTGTTTGCAGAACCTCCATAGGAAGGCACACCAG < 41bp 0.611861464024656 0.916751955733165 0.17156073 0.97046477 prediction 0.609780983417018 Functional Gain - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75606723 chr1:75606727 nonsynonymous SNV 0.984 5 25 hm5C_associated_SNPs_101619 0 0 0 0 2 LHX8 chr1:75606670 3'AG 75606670 Downstream 58bp
chr1 75606727 75606727 1 + C A LUSC 75606723 + 75606703 75606743 41 TCCTGCAGTGTTTGCAGAACCTCCCTAGGAAGGCACACCAG TCCTGCAGTGTTTGCAGAACCTCCATAGGAAGGCACACCAG < 41bp 0.611861464024656 0.916751955733165 0.17156073 0.97046477 prediction 0.609780983417018 Functional Gain - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75606723 chr1:75606727 nonsynonymous SNV 0.984 5 25 hm5C_associated_SNPs_101619 0 0 0 0 2 LHX8 chr1:75606791 5'GT 75606791 Upstream 65bp
chr22 38877312 38877312 1 + T A OV 38877308 + 38877288 38877328 41 TGGAGAGGCTGAGACCATAACTACTCACTACCTGTTCTTTC TGGAGAGGCTGAGACCATAACTACACACTACCTGTTCTTTC < 41bp 0.521740873871856 0.826571967930427 0.18042576 0.38314247 prediction 0.609662188117142 Functional Gain - KDELR3 ENSG00000100196 CDS Human protein_coding chr22:38877308 chr22:38877312 synonymous SNV . 0 25 hm5C_associated_SNPs_101622 0 0 1 0 1 KDELR3 chr22:38877217 3'AG 38877217 Downstream 96bp
chr5 78373431 78373431 1 + C A rs682985 78373427 + 78373407 78373447 41 AGAGGCAGTGATAGAACACCCAGACGCAGGTTGGTGTCCAC AGAGGCAGTGATAGAACACCCAGAAGCAGGTTGGTGTCCAC < 41bp 0.583723102884106 0.88853914744666 0.2595055 0.27811685 prediction 0.609632089125109 Functional Gain - BHMT2 ENSG00000132840 CDS Human protein_coding chr5:78373427 chr5:78373431 nonsynonymous SNV 0.070 0 25 hm5C_associated_SNPs_101624 0 0 1 0 1 BHMT2 chr5:78373435 5'GT 78373435 Upstream 5bp
chr19 41522587 41522587 1 + C A LUAD 41522583 + 41522563 41522603 41 GTCTTGGTGAAGGCATCGCCCGTGCGGAATTGTTCCTCTTC GTCTTGGTGAAGGCATCGCCCGTGAGGAATTGTTCCTCTTC < 41bp 0.431003207202354 0.804787922772482 0.015545607 0.026102692 prediction 0.609575845544963 Functional Gain - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41522583 chr19:41522587 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_101629 0 0 0 0 1 CYP2B6 chr19:41522551 3'AG 41522551 Downstream 37bp
chr8 143763429 143763429 1 + T G STAD 143763427 + 143763407 143763447 41 TACTACGTGGGCAAGAAGAACATCACGTGCTGTGACACCGA TACTACGTGGGCAAGAAGAACAGCACGTGCTGTGACACCGA < 41bp 0.50492684620288 0.809656358456884 0.2435816 0.5818956 prediction 0.609459024508007 Functional Gain - PSCA ENSG00000167653 CDS Human protein_coding chr8:143763427 chr8:143763429 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_101631 0 0 0 0 1 PSCA chr8:143763339 3'AG 143763339 Downstream 91bp
chr19 52868989 52868989 1 + C A PRAD 52868985 + 52868965 52869005 41 TTGGGAAGCAATGCAGAAAACAAGCCTATTAAAAATCAACT TTGGGAAGCAATGCAGAAAACAAGACTATTAAAAATCAACT < 41bp 0.439987040902883 0.804682442464839 0.4146848 0.39668676 prediction 0.609364884929678 Functional Gain - ZNF610 ENSG00000167554 CDS Human protein_coding chr19:52868985 chr19:52868989 nonsynonymous SNV 0.315 0 25 hm5C_associated_SNPs_101634 0 0 0 0 1 ZNF610 chr19:52868951 3'AG 52868951 Downstream 39bp
chr15 40754411 40754411 1 + C A THYM 40754407 + 40754387 40754427 41 CCAAGCAGCCACGTGTCCAGCGCCCACGCCCTCGCCGCCGC CCAAGCAGCCACGTGTCCAGCGCCAACGCCCTCGCCGCCGC < 41bp 0.597968472004863 0.902633361203073 0.5844115 0.5514477 prediction 0.609329778396418 Functional Gain - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40754407 chr15:40754411 nonsynonymous SNV 0.971 2 25 hm5C_associated_SNPs_101635 0 0 0 0 1 BAHD1 chr15:40754493 5'GT 40754493 Upstream 83bp
chr8 29961918 29961918 1 + T G UCEC 29961915 + 29961895 29961935 41 GATACAGATGCTATGAGTAACGCTTGTAAGGAACTTGCCAT GATACAGATGCTATGAGTAACGCGTGTAAGGAACTTGCCAT < 41bp 0.451240612333521 0.804650945163436 0.04006657 0.18943956 prediction 0.609301890326873 Functional Gain - LEPROTL1 ENSG00000104660 CDS Human protein_coding chr8:29961915 chr8:29961918 synonymous SNV . 0 24 hm5C_associated_SNPs_101638 0 0 1 0 1 LEPROTL1 chr8:29962002 5'GT 29962002 Upstream 85bp
chr3 46621297 46621297 1 + C A COAD 46621293 + 46621273 46621313 41 ATGCTGGGGTCCTTTTGTGCCTGCCCTCCCTCCTTCTACGG ATGCTGGGGTCCTTTTGTGCCTGCACTCCCTCCTTCTACGG < 41bp 0.597922291699864 0.902537005402213 0.054561377 0.08513439 prediction 0.609229427404699 Functional Gain - TDGF1 ENSG00000241186 CDS Human protein_coding chr3:46621293 chr3:46621297 nonsynonymous SNV 0.461 3 25 hm5C_associated_SNPs_101639 0 0 0 0 1 TDGF1 chr3:46621229 3'AG 46621229 Downstream 69bp
chr12 123341245 123341245 1 + C A rs59499651 123341241 + 123341221 123341261 41 CCAAGGCCGGAGAGCTGGCCCGCGCGCAGGAGGCCCTGAGC CCAAGGCCGGAGAGCTGGCCCGCGAGCAGGAGGCCCTGAGC < 41bp 0.590859097501505 0.895440161423083 0.49043718 0.5748117 prediction 0.609162127843156 Functional Gain - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123341241 chr12:123341245 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_101643 0 0 1 0 2 HIP1R chr12:123341172 3'AG 123341172 Downstream 74bp
chr12 123341245 123341245 1 + C A rs59499651 123341241 + 123341221 123341261 41 CCAAGGCCGGAGAGCTGGCCCGCGCGCAGGAGGCCCTGAGC CCAAGGCCGGAGAGCTGGCCCGCGAGCAGGAGGCCCTGAGC < 41bp 0.590859097501505 0.895440161423083 0.49043718 0.5748117 prediction 0.609162127843156 Functional Gain - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123341241 chr12:123341245 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_101643 0 0 1 0 2 HIP1R chr12:123341273 5'GT 123341273 Upstream 29bp
chr20 32341075 32341075 1 + C A STAD 32341071 + 32341051 32341091 41 TGCCCCCACCGCCACCACCTCAGCCTCCACCACCTCCACCC TGCCCCCACCGCCACCACCTCAGCATCCACCACCTCCACCC < 41bp 0.597948176296912 0.902523346510306 0.33574176 0.34923267 prediction 0.609150340426788 Functional Gain - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32341071 chr20:32341075 nonsynonymous SNV 0.061 5 25 hm5C_associated_SNPs_101644 0 0 0 0 1 ZNF341 chr20:32340978 3'AG 32340978 Downstream 98bp
chr3 52812454 52812454 1 + C A OV 52812450 + 52812430 52812470 41 CACCAGCCAAGTGGTCAACACTGCCAATGAAGCCAGGGAAG CACCAGCCAAGTGGTCAACACTGCAAATGAAGCCAGGGAAG < 41bp 0.39183403323428 0.804568430311576 0.2804443 0.4951767 prediction 0.609136860623153 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52812450 chr3:52812454 synonymous SNV . 0 25 hm5C_associated_SNPs_101645 0 0 0 4 2 ITIH1 chr3:52812356 3'AG 52812356 Downstream 99bp
chr3 52812454 52812454 1 + C A OV 52812450 + 52812430 52812470 41 CACCAGCCAAGTGGTCAACACTGCCAATGAAGCCAGGGAAG CACCAGCCAAGTGGTCAACACTGCAAATGAAGCCAGGGAAG < 41bp 0.39183403323428 0.804568430311576 0.2804443 0.4951767 prediction 0.609136860623153 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52812450 chr3:52812454 synonymous SNV . 0 25 hm5C_associated_SNPs_101645 0 0 0 4 2 ITIH1 chr3:52812522 5'GT 52812522 Upstream 69bp
chrX 595475 595475 1 + C A rs193922467 595471 + 595451 595491 41 CTGGAGCAGCTGAACGAGCTCGAGCGACTCTTCGACGAGAC CTGGAGCAGCTGAACGAGCTCGAGAGACTCTTCGACGAGAC < 41bp 0.590359270363609 0.894852801565145 0.78464544 0.8889761 prediction 0.608987062403072 Functional Gain - SHOX ENSG00000185960 CDS Human protein_coding chrX:595471 chrX:595475 synonymous SNV . 0 25 hm5C_associated_SNPs_101647 1 0 0 0 1 SHOX chrX:595561 5'GT 595561 Upstream 87bp
chr7 76916837 76916837 1 + C A LUSC 76916833 + 76916813 76916853 41 TGAGCAGGTCTCCAGGCTCACAGACAGGCTCTGCAGCAAAA TGAGCAGGTCTCCAGGCTCACAGAAAGGCTCTGCAGCAAAA < 41bp 0.410874085148015 0.804431131652087 0.4404983 0.83963156 prediction 0.608862263304175 Functional Gain - CCDC146 ENSG00000135205 CDS Human protein_coding chr7:76916833 chr7:76916837 nonsynonymous SNV 0.827 1 25 hm5C_associated_SNPs_101653 0 0 0 0 2 CCDC146 chr7:76916757 3'AG 76916757 Downstream 81bp
chr7 76916837 76916837 1 + C A LUSC 76916833 + 76916813 76916853 41 TGAGCAGGTCTCCAGGCTCACAGACAGGCTCTGCAGCAAAA TGAGCAGGTCTCCAGGCTCACAGAAAGGCTCTGCAGCAAAA < 41bp 0.410874085148015 0.804431131652087 0.4404983 0.83963156 prediction 0.608862263304175 Functional Gain - CCDC146 ENSG00000135205 CDS Human protein_coding chr7:76916833 chr7:76916837 nonsynonymous SNV 0.827 1 25 hm5C_associated_SNPs_101653 0 0 0 0 2 CCDC146 chr7:76916894 5'GT 76916894 Upstream 58bp
chr7 38247143 38247143 1 + C A GBM 38247139 + 38247119 38247159 41 CAGAAGACATGGAGAACGCTCTCACCGGGAGCCAGAGCTCC CAGAAGACATGGAGAACGCTCTCAACGGGAGCCAGAGCTCC < 41bp 0.392467834018102 0.804425326649227 0.024170429 0.06601295 prediction 0.608850653298454 Functional Gain - STARD3NL ENSG00000010270 CDS Human protein_coding chr7:38247139 chr7:38247143 nonsynonymous SNV 0.717 0 25 hm5C_associated_SNPs_101654 0 0 1 0 1 STARD3NL chr7:38247048 3'AG 38247048 Downstream 96bp
chr11 64128041 64128041 1 + C A LIHC 64128037 + 64128017 64128057 41 CGCGTGTATGGGGGTGAGATCGTGCTGGCCCTGGAACACCT CGCGTGTATGGGGGTGAGATCGTGATGGCCCTGGAACACCT < 41bp 0.58465682560267 0.888941514511061 0.8590262 0.8811319 prediction 0.608569377816782 Functional Gain - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64128037 chr11:64128041 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101662 0 0 1 0 2 RPS6KA4 chr11:64127949 3'AG 64127949 Downstream 93bp
chr11 64128041 64128041 1 + C A LIHC 64128037 + 64128017 64128057 41 CGCGTGTATGGGGGTGAGATCGTGCTGGCCCTGGAACACCT CGCGTGTATGGGGGTGAGATCGTGATGGCCCTGGAACACCT < 41bp 0.58465682560267 0.888941514511061 0.8590262 0.8811319 prediction 0.608569377816782 Functional Gain - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64128037 chr11:64128041 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101662 0 0 1 0 2 RPS6KA4 chr11:64128064 5'GT 64128064 Upstream 24bp
chr19 36352463 36352463 1 + C A UCEC 36352459 + 36352439 36352479 41 CCAGCTCCCCCAGTAGTGACCGCCCTGCACTCTGCGCCTGC CCAGCTCCCCCAGTAGTGACCGCCATGCACTCTGCGCCTGC < 41bp 0.396703259306698 0.80422563358601 0.058505952 0.5014453 prediction 0.60845126717202 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36352459 chr19:36352463 nonsynonymous SNV 0.879 3 25 hm5C_associated_SNPs_101665 0 0 0 0 2 KIRREL2 chr19:36352443 3'AG 36352443 Downstream 21bp
chr19 36352463 36352463 1 + C A UCEC 36352459 + 36352439 36352479 41 CCAGCTCCCCCAGTAGTGACCGCCCTGCACTCTGCGCCTGC CCAGCTCCCCCAGTAGTGACCGCCATGCACTCTGCGCCTGC < 41bp 0.396703259306698 0.80422563358601 0.058505952 0.5014453 prediction 0.60845126717202 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36352459 chr19:36352463 nonsynonymous SNV 0.879 3 25 hm5C_associated_SNPs_101665 0 0 0 0 2 KIRREL2 chr19:36352543 5'GT 36352543 Upstream 81bp
chr5 176304651 176304651 1 + C A HNSC 176304647 + 176304627 176304667 41 ATGGACCACTGTGGGGAGCCCAGCCCTGACAGCTGGAGCCT ATGGACCACTGTGGGGAGCCCAGCACTGACAGCTGGAGCCT < 41bp 0.404596893028879 0.804190182250659 0.7389428 0.6211112 prediction 0.608380364501318 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176304647 chr5:176304651 nonsynonymous SNV 0.736 1 25 hm5C_associated_SNPs_101668 0 0 0 0 1 UNC5A chr5:176304704 5'GT 176304704 Upstream 54bp
chr19 51361472 51361472 1 + C A rs2003783 51361468 + 51361448 51361488 41 CTCCGCCTGTCAGAGCCTGCCGAGCTCACGGATGCTGTGAA CTCCGCCTGTCAGAGCCTGCCGAGATCACGGATGCTGTGAA < 41bp 0.593226580023012 0.897369923679596 0.25515783 0.25547582 prediction 0.608286687313168 Functional Gain - KLK3 ENSG00000142515 CDS Human protein_coding chr19:51361468 chr19:51361472 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_101671 0 0 0 0 1 KLK3 chr19:51361414 3'AG 51361414 Downstream 59bp
chr4 71062308 71062308 1 + C A rs61747755 71062304 + 71062284 71062324 41 ATTCCTGGGAGCCACATTGTCAGCCCCAGTAAGTGATTTTA ATTCCTGGGAGCCACATTGTCAGCACCAGTAAGTGATTTTA < 41bp 0.445085892143623 0.804041193629361 0.4392688 0.24174717 prediction 0.608082387258722 Functional Gain - ODAM ENSG00000109205 CDS Human protein_coding chr4:71062304 chr4:71062308 synonymous SNV . 0 25 hm5C_associated_SNPs_101674 0 0 0 0 1 ODAM chr4:71062311 5'GT 71062311 Upstream 4bp
chr21 43979120 43979120 1 + C A THCA 43979116 + 43979096 43979136 41 CAGATGGGAAGGGCTCCATCCACCCGAACCACGTCGTCATT CAGATGGGAAGGGCTCCATCCACCAGAACCACGTCGTCATT < 41bp 0.388919052070319 0.803998847065568 0.43453354 0.31384018 prediction 0.607997694131135 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43979116 chr21:43979120 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_101676 0 0 0 0 2 SLC37A1 chr21:43979068 3'AG 43979068 Downstream 53bp
chr21 43979120 43979120 1 + C A THCA 43979116 + 43979096 43979136 41 CAGATGGGAAGGGCTCCATCCACCCGAACCACGTCGTCATT CAGATGGGAAGGGCTCCATCCACCAGAACCACGTCGTCATT < 41bp 0.388919052070319 0.803998847065568 0.43453354 0.31384018 prediction 0.607997694131135 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43979116 chr21:43979120 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_101676 0 0 0 0 2 SLC37A1 chr21:43979199 5'GT 43979199 Upstream 80bp
chr1 89236120 89236120 1 + C A rs35207128 89236116 + 89236096 89236136 41 TCATACGAATGCAGATTCTTCAGGCAGTCCAGACTAATGAA TCATACGAATGCAGATTCTTCAGGAAGTCCAGACTAATGAA < 41bp 0.422523521948135 0.803986001900845 0.7242791 0.613339 prediction 0.60797200380169 Functional Gain - PKN2 ENSG00000065243 CDS Human protein_coding chr1:89236116 chr1:89236120 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_101678 0 0 1 0 2 PKN2 chr1:89236035 3'AG 89236035 Downstream 86bp
chr1 89236120 89236120 1 + C A rs35207128 89236116 + 89236096 89236136 41 TCATACGAATGCAGATTCTTCAGGCAGTCCAGACTAATGAA TCATACGAATGCAGATTCTTCAGGAAGTCCAGACTAATGAA < 41bp 0.422523521948135 0.803986001900845 0.7242791 0.613339 prediction 0.60797200380169 Functional Gain - PKN2 ENSG00000065243 CDS Human protein_coding chr1:89236116 chr1:89236120 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_101678 0 0 1 0 2 PKN2 chr1:89236152 5'GT 89236152 Upstream 33bp
chr14 89307233 89307233 1 + C A BLCA 89307229 + 89307209 89307249 41 GCCCTGGAACGTCTTTGAAACTCCCTGGAACTAATCAGACA GCCCTGGAACGTCTTTGAAACTCCATGGAACTAATCAGACA < 41bp 0.386738039360042 0.803935036916239 0.22433391 0.9636776 prediction 0.607870073832477 Functional Gain - TTC8 ENSG00000165533 CDS Human protein_coding chr14:89307229 chr14:89307233 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_101679 0 0 1 0 3 TTC8 chr14:89307209 3'AG 89307209 Downstream 25bp
chr14 89307233 89307233 1 + C A BLCA 89307229 + 89307209 89307249 41 GCCCTGGAACGTCTTTGAAACTCCCTGGAACTAATCAGACA GCCCTGGAACGTCTTTGAAACTCCATGGAACTAATCAGACA < 41bp 0.386738039360042 0.803935036916239 0.22433391 0.9636776 prediction 0.607870073832477 Functional Gain - TTC8 ENSG00000165533 CDS Human protein_coding chr14:89307229 chr14:89307233 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_101679 0 0 1 0 3 TTC8 chr14:89307267 5'GT 89307267 Upstream 35bp
chr14 89307233 89307233 1 + C A BLCA 89307229 + 89307209 89307249 41 GCCCTGGAACGTCTTTGAAACTCCCTGGAACTAATCAGACA GCCCTGGAACGTCTTTGAAACTCCATGGAACTAATCAGACA < 41bp 0.386738039360042 0.803935036916239 0.22433391 0.9636776 prediction 0.607870073832477 Functional Gain - TTC8 ENSG00000165533 CDS Human protein_coding chr14:89307229 chr14:89307233 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_101679 0 0 1 0 3 TTC8 chr14:89307272 5'GT 89307272 Upstream 40bp
chr3 50614990 50614990 1 + T G rs2232251 50614988 + 50614968 50615008 41 AAGCTGCTATCTCTCTGACCCATGAGAATGCTCAGAGGTAG AAGCTGCTATCTCTCTGACCCAGGAGAATGCTCAGAGGTAG < 41bp 0.531629489213609 0.835547690893931 0.1891515 0.8773847 prediction 0.607836403360643 Functional Gain - HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614988 chr3:50614990 nonsynonymous SNV 0.808 0 23 hm5C_associated_SNPs_101680 0 0 1 0 2 HEMK1 chr3:50614940 3'AG 50614940 Downstream 51bp
chr3 50614990 50614990 1 + T G rs2232251 50614988 + 50614968 50615008 41 AAGCTGCTATCTCTCTGACCCATGAGAATGCTCAGAGGTAG AAGCTGCTATCTCTCTGACCCAGGAGAATGCTCAGAGGTAG < 41bp 0.531629489213609 0.835547690893931 0.1891515 0.8773847 prediction 0.607836403360643 Functional Gain - HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614988 chr3:50614990 nonsynonymous SNV 0.808 0 23 hm5C_associated_SNPs_101680 0 0 1 0 2 HEMK1 chr3:50615004 5'GT 50615004 Upstream 15bp
chr12 8673765 8673765 1 + T G LUSC 8673762 + 8673742 8673782 41 GACAACTCTCAGGGAGAAAACTGTGTTGTTCTTGTTTATAA GACAACTCTCAGGGAGAAAACTGGGTTGTTCTTGTTTATAA < 41bp 0.557740571198309 0.861645415460087 0.39777628 0.9038321 prediction 0.607809688523557 Functional Gain - CLEC4D ENSG00000166527 CDS Human protein_coding chr12:8673762 chr12:8673765 nonsynonymous SNV 0.977 3 24 hm5C_associated_SNPs_101681 0 0 0 0 1 CLEC4D chr12:8673720 3'AG 8673720 Downstream 46bp
chr14 21464975 21464975 1 + T G SKCM 21464973 + 21464953 21464993 41 TCGTTGTGCCCGTGTCAGCTCCTGGGGAGATCTTTTACCTG TCGTTGTGCCCGTGTCAGCTCCGGGGGAGATCTTTTACCTG < 41bp 0.517029282423823 0.820910446897315 0.8620981 0.93924296 prediction 0.607762328946983 Functional Gain - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21464973 chr14:21464975 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_101683 0 0 1 0 2 METTL17 chr14:21464944 3'AG 21464944 Downstream 32bp
chr14 21464975 21464975 1 + T G SKCM 21464973 + 21464953 21464993 41 TCGTTGTGCCCGTGTCAGCTCCTGGGGAGATCTTTTACCTG TCGTTGTGCCCGTGTCAGCTCCGGGGGAGATCTTTTACCTG < 41bp 0.517029282423823 0.820910446897315 0.8620981 0.93924296 prediction 0.607762328946983 Functional Gain - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21464973 chr14:21464975 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_101683 0 0 1 0 2 METTL17 chr14:21464971 3'AG 21464971 Downstream 5bp
chrX 136651199 136651199 1 + C A LUSC 136651195 + 136651175 136651215 41 TGTGCGACAAGTCCTACACGCACCCGAGCTCCCTGCGCAAA TGTGCGACAAGTCCTACACGCACCAGAGCTCCCTGCGCAAA < 41bp 0.389045111143654 0.803864488524861 0.08002639 0.14917916 prediction 0.607728977049723 Functional Gain - ZIC3 ENSG00000156925 CDS Human protein_coding chrX:136651195 chrX:136651199 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101685 0 0 0 0 1 ZIC3 chrX:136651224 5'GT 136651224 Upstream 26bp
chr17 9503411 9503411 1 + C A CESC 9503407 + 9503387 9503427 41 GATGATGATGATAGCTTTTTCTACCTTGGCACCACGACTGG GATGATGATGATAGCTTTTTCTACATTGGCACCACGACTGG < 41bp 0.397150858263761 0.803814243530463 0.110180795 0.8859422 prediction 0.607628487060927 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9503407 chr17:9503411 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_101690 0 0 0 0 2 CFAP52 chr17:9503384 3'AG 9503384 Downstream 28bp
chr17 9503411 9503411 1 + C A CESC 9503407 + 9503387 9503427 41 GATGATGATGATAGCTTTTTCTACCTTGGCACCACGACTGG GATGATGATGATAGCTTTTTCTACATTGGCACCACGACTGG < 41bp 0.397150858263761 0.803814243530463 0.110180795 0.8859422 prediction 0.607628487060927 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9503407 chr17:9503411 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_101690 0 0 0 0 2 CFAP52 chr17:9503500 5'GT 9503500 Upstream 90bp
chr21 45826582 45826582 1 + C A COAD 45826578 + 45826558 45826598 41 CACAACGAGCGCCGGGTGGACTGGCTGTTCCGAGGGGCCGT CACAACGAGCGCCGGGTGGACTGGATGTTCCGAGGGGCCGT < 41bp 0.587228520807172 0.890998478606131 0.56305766 0.3770162 prediction 0.607539915597917 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45826578 chr21:45826582 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_101693 0 0 0 0 1 TRPM2 chr21:45826648 5'GT 45826648 Upstream 67bp
chr6 36929703 36929703 1 + C G rs139815357 36929702 + 36929682 36929722 41 GGCCCTACCAGGAGGGGACTCCGTGCTCCCAATGTCCCTCT GGCCCTACCAGGAGGGGACTCGGTGCTCCCAATGTCCCTCT < 41bp 0.500321644481992 0.804090624888573 0.75290453 0.80665076 prediction 0.607537960813161 Functional Gain - PI16 ENSG00000164530 CDS Human protein_coding chr6:36929702 chr6:36929703 nonsynonymous SNV 0.823 2 22 hm5C_associated_SNPs_101694 0 0 0 0 2 PI16 chr6:36929662 3'AG 36929662 Downstream 42bp
chr6 36929703 36929703 1 + C G rs139815357 36929702 + 36929682 36929722 41 GGCCCTACCAGGAGGGGACTCCGTGCTCCCAATGTCCCTCT GGCCCTACCAGGAGGGGACTCGGTGCTCCCAATGTCCCTCT < 41bp 0.500321644481992 0.804090624888573 0.75290453 0.80665076 prediction 0.607537960813161 Functional Gain - PI16 ENSG00000164530 CDS Human protein_coding chr6:36929702 chr6:36929703 nonsynonymous SNV 0.823 2 22 hm5C_associated_SNPs_101694 0 0 0 0 2 PI16 chr6:36929750 5'GT 36929750 Upstream 48bp
chr5 131722739 131722739 1 + T G LGG 131722736 + 131722716 131722756 41 GGTTCATCCCTGAGTCCCCCCGATGGCTCATCTCTCAGGGA GGTTCATCCCTGAGTCCCCCCGAGGGCTCATCTCTCAGGGA < 41bp 0.408819155317551 0.80376297280915 0.20436943 0.91681314 prediction 0.607525945618301 Functional Gain - SLC22A5 ENSG00000197375 CDS Human protein_coding chr5:131722736 chr5:131722739 nonsynonymous SNV 0.941 4 24 hm5C_associated_SNPs_101695 0 0 1 0 1 SLC22A5 chr5:131722717 3'AG 131722717 Downstream 23bp
chr11 832997 832997 1 + C A rs533528756 832993 + 832973 833013 41 CGCCCCCGCAGCTGCTGCCGCCGCCGCCAGGGCCCGGACTC CGCCCCCGCAGCTGCTGCCGCCGCAGCCAGGGCCCGGACTC < 41bp 0.468973169096102 0.803734119932279 0.3343788 0.298782 prediction 0.607468239864558 Functional Gain - CD151 ENSG00000177697 UTR5 Human protein_coding chr11:832993 chr11:832997 . . 0 25 hm5C_associated_SNPs_101696 0 0 1 0 2 CD151 chr11:833022 5'GT 833022 Upstream 26bp
chr11 832997 832997 1 + C A rs533528756 832993 + 832973 833013 41 CGCCCCCGCAGCTGCTGCCGCCGCCGCCAGGGCCCGGACTC CGCCCCCGCAGCTGCTGCCGCCGCAGCCAGGGCCCGGACTC < 41bp 0.468973169096102 0.803734119932279 0.3343788 0.298782 prediction 0.607468239864558 Functional Gain - CD151 ENSG00000177697 UTR5 Human protein_coding chr11:832993 chr11:832997 . . 0 25 hm5C_associated_SNPs_101696 0 0 1 0 2 CD151 chr11:833026 5'GT 833026 Upstream 30bp
chr11 93808494 93808494 1 + C A UCEC 93808490 + 93808470 93808510 41 TCCAATTAAGGACACCAGCTCTGGCCTGGTAGGGCCTTTGC TCCAATTAAGGACACCAGCTCTGGACTGGTAGGGCCTTTGC < 41bp 0.397646862775477 0.803727119224687 0.42498446 0.52761626 prediction 0.607454238449375 Functional Gain - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93808490 chr11:93808494 synonymous SNV . 0 25 hm5C_associated_SNPs_101697 0 0 0 0 1 HEPHL1 chr11:93808551 5'GT 93808551 Upstream 58bp
chr16 1291636 1291636 1 + C A COAD 1291632 + 1291612 1291652 41 CCACACGGTCACCCTGCCCCCTGCCTCAGAGACCTTCCCCC CCACACGGTCACCCTGCCCCCTGCATCAGAGACCTTCCCCC < 41bp 0.597163524091362 0.900856827803091 0.06590325 0.18082383 prediction 0.607386607423458 Functional Gain - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291632 chr16:1291636 synonymous SNV . 0 25 hm5C_associated_SNPs_101698 0 0 0 0 1 TPSAB1 chr16:1291700 5'GT 1291700 Upstream 65bp
chr2 106682235 106682235 1 + C A rs4266035 106682231 + 106682211 106682251 41 CCCCGCCGCCATGGCTGCCTCCCCCGCGCGGCCTGCTGTCC CCCCGCCGCCATGGCTGCCTCCCCAGCGCGGCCTGCTGTCC < 41bp 0.576146597130608 0.879770106389274 0.04653144 0.06340036 prediction 0.607247018517332 Functional Gain - C2orf40 ENSG00000119147 CDS Human protein_coding chr2:106682231 chr2:106682235 synonymous SNV . 0 25 hm5C_associated_SNPs_101700 0 0 0 0 1 C2orf40 chr2:106682299 5'GT 106682299 Upstream 65bp
chr2 128180553 128180553 1 + C A rs201371512 128180549 + 128180529 128180569 41 CTAGATCCCCGGCTGGACTACCGGCGCCCGCGCCCCTCGGG CTAGATCCCCGGCTGGACTACCGGAGCCCGCGCCCCTCGGG < 41bp 0.561581175485089 0.865186282590095 0.908159 0.9004814 prediction 0.607210214210012 Functional Gain - PROC ENSG00000115718 intronic Human protein_coding chr2:128180549 chr2:128180553 . . 0 25 hm5C_associated_SNPs_101701 0 0 1 0 1 PROC chr2:128180493 3'AG 128180493 Downstream 61bp
chr17 44953888 44953888 1 + C A LUAD 44953884 + 44953864 44953904 41 AGGACTCACCCAGCTTCTGCCGGCCCAGCAAGTACTCACCT AGGACTCACCCAGCTTCTGCCGGCACAGCAAGTACTCACCT < 41bp 0.397722893674035 0.803566118049677 0.43870696 0.6581875 prediction 0.607132236099354 Functional Gain - WNT9B ENSG00000158955 CDS Human protein_coding chr17:44953884 chr17:44953888 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_101702 0 0 0 0 1 WNT9B chr17:44953914 5'GT 44953914 Upstream 27bp
chr6 55216136 55216136 1 + T G HNSC 55216134 + 55216114 55216154 41 ATGCACAGTTGGCCTCTTACCTTAAAGCTTGCTCAGCAAAT ATGCACAGTTGGCCTCTTACCTGAAAGCTTGCTCAGCAAAT < 41bp 0.521700336386723 0.825257609087201 0.044368863 0.19555593 prediction 0.607114545400957 Functional Gain - GFRAL ENSG00000187871 CDS Human protein_coding chr6:55216134 chr6:55216136 synonymous SNV . 0 23 hm5C_associated_SNPs_101703 0 0 0 0 1 GFRAL chr6:55216051 3'AG 55216051 Downstream 86bp
chr17 48745239 48745239 1 + C A UCEC 48745235 + 48745215 48745255 41 GCTGCTCAGGTGACCCTGATCACCCTCTGGGTGTACGTGTA GCTGCTCAGGTGACCCTGATCACCATCTGGGTGTACGTGTA < 41bp 0.387738209199274 0.80351261590901 0.09125504 0.13684115 prediction 0.607025231818021 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48745235 chr17:48745239 nonsynonymous SNV 0.912 3 25 hm5C_associated_SNPs_101705 0 0 1 0 1 ABCC3 chr17:48745224 3'AG 48745224 Downstream 16bp
chr20 62836443 62836443 1 + C A LUSC 62836439 + 62836419 62836459 41 CACGTCCGGGGCAAGTACTCCAGGCACCGAAGGTAAGAGGA CACGTCCGGGGCAAGTACTCCAGGAACCGAAGGTAAGAGGA < 41bp 0.409871038989727 0.803442141227532 0.65591025 0.8232181 prediction 0.606884282455065 Functional Gain - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62836439 chr20:62836443 nonsynonymous SNV 0.881 4 25 hm5C_associated_SNPs_101710 0 0 0 0 2 MYT1 chr20:62836388 3'AG 62836388 Downstream 56bp
chr20 62836443 62836443 1 + C A LUSC 62836439 + 62836419 62836459 41 CACGTCCGGGGCAAGTACTCCAGGCACCGAAGGTAAGAGGA CACGTCCGGGGCAAGTACTCCAGGAACCGAAGGTAAGAGGA < 41bp 0.409871038989727 0.803442141227532 0.65591025 0.8232181 prediction 0.606884282455065 Functional Gain - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62836439 chr20:62836443 nonsynonymous SNV 0.881 4 25 hm5C_associated_SNPs_101710 0 0 0 0 2 MYT1 chr20:62836450 5'GT 62836450 Upstream 8bp
chr5 176863247 176863247 1 + C A OV 176863243 + 176863223 176863263 41 GAGGTCCCCGAGGAGTATTCCGAGCGCTTTTCCCCGCAGGC GAGGTCCCCGAGGAGTATTCCGAGAGCTTTTCCCCGCAGGC < 41bp 0.578376493820711 0.881808741955509 0.8436541 0.9055053 prediction 0.606864496269595 Functional Gain - GRK6 ENSG00000198055 CDS Human protein_coding chr5:176863243 chr5:176863247 nonsynonymous SNV 0.229 2 25 hm5C_associated_SNPs_101712 0 0 1 0 1 GRK6 chr5:176863282 5'GT 176863282 Upstream 36bp
chr19 15793218 15793218 1 + C A LUSC 15793214 + 15793194 15793234 41 GCCAGGACAAGTGGCAGCACCTGGCCTCAGAGGGCAGCAGT GCCAGGACAAGTGGCAGCACCTGGACTCAGAGGGCAGCAGT < 41bp 0.594067785585437 0.897488990303923 0.29512113 0.8560926 prediction 0.606842409436972 Functional Gain - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15793214 chr19:15793218 nonsynonymous SNV 0.959 1 25 hm5C_associated_SNPs_101716 0 0 1 0 1 CYP4F12 chr19:15793199 3'AG 15793199 Downstream 20bp
chr4 90816678 90816678 1 + C A LUAD 90816674 + 90816654 90816694 41 GCCCCACGGGAAACATACCTCAGCCGGGGTGACAGCAGTTC GCCCCACGGGAAACATACCTCAGCAGGGGTGACAGCAGTTC < 41bp 0.583760514643568 0.88712217178491 0.33109704 0.5096516 prediction 0.606723314282685 Functional Gain - MMRN1 ENSG00000138722 CDS Human protein_coding chr4:90816674 chr4:90816678 synonymous SNV . 0 25 hm5C_associated_SNPs_101722 0 0 0 0 1 MMRN1 chr4:90816745 5'GT 90816745 Upstream 68bp
chr5 10461398 10461398 1 + T G GBM 10461395 + 10461375 10461415 41 AGACGTTTTCCTACGTTTACCGCTACTTGGCCAGATTAGAC AGACGTTTTCCTACGTTTACCGCGACTTGGCCAGATTAGAC < 41bp 0.580955721923196 0.884300860239045 0.15843627 0.3094206 prediction 0.606690276631698 Functional Gain - ROPN1L ENSG00000145491 CDS Human protein_coding chr5:10461395 chr5:10461398 nonsynonymous SNV 0.078 4 24 hm5C_associated_SNPs_101723 0 0 0 0 1 ROPN1L chr5:10461471 5'GT 10461471 Upstream 74bp
chr11 67160217 67160217 1 + T G LUSC 67160215 + 67160195 67160235 41 AGCAATACCAGGCAGCCACCCCTGGTCAGGACCTGCTGCGC AGCAATACCAGGCAGCCACCCCGGGTCAGGACCTGCTGCGC < 41bp 0.460126441083874 0.803336559430892 0.062662214 0.8991482 prediction 0.606673118861783 Functional Gain - RAD9A ENSG00000172613 CDS Human protein_coding chr11:67160215 chr11:67160217 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_101724 0 0 1 0 2 RAD9A chr11:67160125 3'AG 67160125 Downstream 93bp
chr11 67160217 67160217 1 + T G LUSC 67160215 + 67160195 67160235 41 AGCAATACCAGGCAGCCACCCCTGGTCAGGACCTGCTGCGC AGCAATACCAGGCAGCCACCCCGGGTCAGGACCTGCTGCGC < 41bp 0.460126441083874 0.803336559430892 0.062662214 0.8991482 prediction 0.606673118861783 Functional Gain - RAD9A ENSG00000172613 CDS Human protein_coding chr11:67160215 chr11:67160217 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_101724 0 0 1 0 2 RAD9A chr11:67160253 5'GT 67160253 Upstream 37bp
chr12 54963356 54963356 1 + T G LUSC 54963353 + 54963333 54963373 41 GTTCCGGAGAACATACACCTCTGTGGGCCCCACTTACTCTA GTTCCGGAGAACATACACCTCTGGGGGCCCCACTTACTCTA < 41bp 0.428419451164472 0.803333877383626 0.03613648 0.15510026 prediction 0.606667754767253 Functional Gain - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54963353 chr12:54963356 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_101725 0 0 0 0 2 PDE1B chr12:54963330 3'AG 54963330 Downstream 27bp
chr12 54963356 54963356 1 + T G LUSC 54963353 + 54963333 54963373 41 GTTCCGGAGAACATACACCTCTGTGGGCCCCACTTACTCTA GTTCCGGAGAACATACACCTCTGGGGGCCCCACTTACTCTA < 41bp 0.428419451164472 0.803333877383626 0.03613648 0.15510026 prediction 0.606667754767253 Functional Gain - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54963353 chr12:54963356 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_101725 0 0 0 0 2 PDE1B chr12:54963396 5'GT 54963396 Upstream 41bp
chr4 145655948 145655948 1 + T G UCEC 145655946 + 145655926 145655966 41 ACAACCTGCACAGACACTGACTTCAGAGTGCTCCAGGCTCT ACAACCTGCACAGACACTGACTGCAGAGTGCTCCAGGCTCT < 41bp 0.48218619924434 0.803254285345033 0.10431263 0.22340858 prediction 0.606508570690065 Functional Gain - HHIP ENSG00000164161 CDS Human protein_coding chr4:145655946 chr4:145655948 nonsynonymous SNV 0.326 2 23 hm5C_associated_SNPs_101728 0 0 0 0 2 HHIP chr4:145655893 3'AG 145655893 Downstream 56bp
chr4 145655948 145655948 1 + T G UCEC 145655946 + 145655926 145655966 41 ACAACCTGCACAGACACTGACTTCAGAGTGCTCCAGGCTCT ACAACCTGCACAGACACTGACTGCAGAGTGCTCCAGGCTCT < 41bp 0.48218619924434 0.803254285345033 0.10431263 0.22340858 prediction 0.606508570690065 Functional Gain - HHIP ENSG00000164161 CDS Human protein_coding chr4:145655946 chr4:145655948 nonsynonymous SNV 0.326 2 23 hm5C_associated_SNPs_101728 0 0 0 0 2 HHIP chr4:145656041 5'GT 145656041 Upstream 94bp
chr1 32681437 32681437 1 + T G BRCA 32681435 + 32681415 32681455 41 ATAGTGGAAGAGGCCTTGTCCCTGGAAAACCAGCCTGGGGC ATAGTGGAAGAGGCCTTGTCCCGGGAAAACCAGCCTGGGGC < 41bp 0.525451402102514 0.828670280962594 0.12409037 0.88635266 prediction 0.606437757720159 Functional Gain - DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32681435 chr1:32681437 nonsynonymous SNV 0.046 0 23 hm5C_associated_SNPs_101733 0 0 0 0 1 DCDC2B chr1:32681403 3'AG 32681403 Downstream 35bp
chr4 25351214 25351214 1 + C A ACC 25351210 + 25351190 25351230 41 TTGGTGGCTTGGTTGAACCTCTGGCTATTACATTCAAGAAG TTGGTGGCTTGGTTGAACCTCTGGATATTACATTCAAGAAG < 41bp 0.592065791912311 0.895257029058077 0.08162862 0.14935464 prediction 0.606382474291533 Functional Gain - ZCCHC4 ENSG00000168228 CDS Human protein_coding chr4:25351210 chr4:25351214 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101736 0 0 1 3 1 ZCCHC4 chr4:25351264 5'GT 25351264 Upstream 51bp
chr10 118969029 118969029 1 + T G STAD 118969027 + 118969007 118969047 41 GGCTATGGCTACATCTACCCCGTCACCAGGCTTGGCAAGTA GGCTATGGCTACATCTACCCCGGCACCAGGCTTGGCAAGTA < 41bp 0.504276461783063 0.807404521839829 0.054614484 0.3505531 prediction 0.606256120113533 Functional Gain - KCNK18 ENSG00000186795 CDS Human protein_coding chr10:118969027 chr10:118969029 nonsynonymous SNV 0.972 1 23 hm5C_associated_SNPs_101738 0 0 0 0 1 KCNK18 chr10:118969008 3'AG 118969008 Downstream 22bp
chr1 1398032 1398032 1 + C A rs181068440 1398028 + 1398008 1398048 41 GGGAGGAAGTGCTTAGAGATCGCTCGGCTGACAGAGGGCAT GGGAGGAAGTGCTTAGAGATCGCTAGGCTGACAGAGGGCAT < 41bp 0.401060334060806 0.803109726086598 0.11203095 0.22675815 prediction 0.606219452173197 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1398028 chr1:1398032 synonymous SNV . 0 25 hm5C_associated_SNPs_101739 0 0 0 0 2 ATAD3C chr1:1397980 3'AG 1397980 Downstream 53bp
chr1 1398032 1398032 1 + C A rs181068440 1398028 + 1398008 1398048 41 GGGAGGAAGTGCTTAGAGATCGCTCGGCTGACAGAGGGCAT GGGAGGAAGTGCTTAGAGATCGCTAGGCTGACAGAGGGCAT < 41bp 0.401060334060806 0.803109726086598 0.11203095 0.22675815 prediction 0.606219452173197 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1398028 chr1:1398032 synonymous SNV . 0 25 hm5C_associated_SNPs_101739 0 0 0 0 2 ATAD3C chr1:1398088 5'GT 1398088 Upstream 57bp
chr10 85944465 85944465 1 + C A HNSC 85944461 + 85944441 85944481 41 TCATGTGAGGCTCTGTAAACCATGCAAGCTTGAGCCAGAGC TCATGTGAGGCTCTGTAAACCATGAAAGCTTGAGCCAGAGC < 41bp 0.428931363477539 0.803013467565439 0.15919921 0.09964526 prediction 0.606026935130878 Functional Gain - C10orf99 ENSG00000188373 CDS Human protein_coding chr10:85944461 chr10:85944465 stopgain 0.008 0 25 hm5C_associated_SNPs_101747 0 0 0 0 1 C10orf99 chr10:85944437 3'AG 85944437 Downstream 29bp
chr7 24324980 24324980 1 + C A HNSC 24324976 + 24324956 24324996 41 CCGGACAACCCGGGCGAGGACGCACCAGCGGAGGACATGGC CCGGACAACCCGGGCGAGGACGCAACAGCGGAGGACATGGC < 41bp 0.603752726311009 0.906754915126524 0.35659856 0.5597933 prediction 0.606004377631031 Functional Gain - NPY ENSG00000122585 CDS Human protein_coding chr7:24324976 chr7:24324980 nonsynonymous SNV 0.859 1 25 hm5C_associated_SNPs_101748 0 0 0 0 1 NPY chr7:24325047 5'GT 24325047 Upstream 68bp
chr17 40705565 40705565 1 + C A UCEC 40705561 + 40705541 40705581 41 TAGGGACTGTGCGGATGCTGCAGGCCTTCCTGCCAGACATG TAGGGACTGTGCGGATGCTGCAGGACTTCCTGCCAGACATG < 41bp 0.586727912188422 0.889690854120645 0.86238337 0.86788595 prediction 0.605925883864445 Functional Gain - HSD17B1 ENSG00000108786 CDS Human protein_coding chr17:40705561 chr17:40705565 nonsynonymous SNV 0.960 2 25 hm5C_associated_SNPs_101749 0 0 1 0 1 HSD17B1 chr17:40705636 5'GT 40705636 Upstream 72bp
chr19 36033459 36033459 1 + T G UCEC 36033457 + 36033437 36033477 41 TCACCGGATGCACCAATGTTCGTCATGGGTGTCAATGAAAA TCACCGGATGCACCAATGTTCGGCATGGGTGTCAATGAAAA < 41bp 0.504211950541395 0.807124034557925 0.33400542 0.4419757 prediction 0.605824168033061 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36033457 chr19:36033459 nonsynonymous SNV 0.925 4 23 hm5C_associated_SNPs_101751 0 0 0 0 2 GAPDHS chr19:36033392 3'AG 36033392 Downstream 68bp
chr19 36033459 36033459 1 + T G UCEC 36033457 + 36033437 36033477 41 TCACCGGATGCACCAATGTTCGTCATGGGTGTCAATGAAAA TCACCGGATGCACCAATGTTCGGCATGGGTGTCAATGAAAA < 41bp 0.504211950541395 0.807124034557925 0.33400542 0.4419757 prediction 0.605824168033061 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36033457 chr19:36033459 nonsynonymous SNV 0.925 4 23 hm5C_associated_SNPs_101751 0 0 0 0 2 GAPDHS chr19:36033510 5'GT 36033510 Upstream 52bp
chr19 35642229 35642229 1 + T G LUAD 35642227 + 35642207 35642247 41 CTGCTGGGTATCCTCATCGTCATCAGTAAGTGCGACCCATT CTGCTGGGTATCCTCATCGTCAGCAGTAAGTGCGACCCATT < 41bp 0.525181833596632 0.828084780431152 0.20317313 0.7286204 prediction 0.60580589366904 Functional Gain - FXYD7 ENSG00000221946 CDS Human protein_coding chr19:35642227 chr19:35642229 nonsynonymous SNV 0.804 1 23 hm5C_associated_SNPs_101752 0 0 0 0 2 FXYD7 chr19:35642157 3'AG 35642157 Downstream 73bp
chr19 35642229 35642229 1 + T G LUAD 35642227 + 35642207 35642247 41 CTGCTGGGTATCCTCATCGTCATCAGTAAGTGCGACCCATT CTGCTGGGTATCCTCATCGTCAGCAGTAAGTGCGACCCATT < 41bp 0.525181833596632 0.828084780431152 0.20317313 0.7286204 prediction 0.60580589366904 Functional Gain - FXYD7 ENSG00000221946 CDS Human protein_coding chr19:35642227 chr19:35642229 nonsynonymous SNV 0.804 1 23 hm5C_associated_SNPs_101752 0 0 0 0 2 FXYD7 chr19:35642231 5'GT 35642231 Upstream 3bp
chr16 23700989 23700989 1 + T A SKCM 23700985 + 23700965 23701005 41 AGCAACGGCAGCGTGCAGATCAACTTCTTCCAGGTGAGCTG AGCAACGGCAGCGTGCAGATCAACATCTTCCAGGTGAGCTG < 41bp 0.488471541002678 0.802867808155709 0.041276872 0.066633314 prediction 0.605735616311418 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700985 chr16:23700989 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101755 0 0 1 0 1 PLK1 chr16:23700997 5'GT 23700997 Upstream 9bp
chr1 32089310 32089310 1 + C A UCEC 32089306 + 32089286 32089326 41 ATGGTGGTGCTGCTGGTCTTCGCCCTCTGCTACCTGCCCAT ATGGTGGTGCTGCTGGTCTTCGCCATCTGCTACCTGCCCAT < 41bp 0.599988994606067 0.902802438073084 0.11837575 0.3583151 prediction 0.605626886934035 Functional Gain - HCRTR1 ENSG00000121764 CDS Human protein_coding chr1:32089306 chr1:32089310 nonsynonymous SNV 0.986 1 25 hm5C_associated_SNPs_101758 0 0 0 0 1 HCRTR1 chr1:32089350 5'GT 32089350 Upstream 41bp
chr12 53676948 53676948 1 + C A UCEC 53676944 + 53676924 53676964 41 CCTGAGATAGCTCTCATAGACTCCCATAAGCTCCTCCGAAG CCTGAGATAGCTCTCATAGACTCCAATAAGCTCCTCCGAAG < 41bp 0.375888408294808 0.802765564156247 0.15150014 0.9569529 prediction 0.605531128312495 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53676944 chr12:53676948 nonsynonymous SNV 0.747 4 25 hm5C_associated_SNPs_101762 0 0 1 0 2 ESPL1 chr12:53676913 3'AG 53676913 Downstream 36bp
chr12 53676948 53676948 1 + C A UCEC 53676944 + 53676924 53676964 41 CCTGAGATAGCTCTCATAGACTCCCATAAGCTCCTCCGAAG CCTGAGATAGCTCTCATAGACTCCAATAAGCTCCTCCGAAG < 41bp 0.375888408294808 0.802765564156247 0.15150014 0.9569529 prediction 0.605531128312495 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53676944 chr12:53676948 nonsynonymous SNV 0.747 4 25 hm5C_associated_SNPs_101762 0 0 1 0 2 ESPL1 chr12:53677041 5'GT 53677041 Upstream 94bp
chr4 154265827 154265827 1 + T G rs71620253 154265825 + 154265805 154265845 41 GGCGCCAAAATCAAACGCGTCCTGGCCTGTCCCGCCCCTCT GGCGCCAAAATCAAACGCGTCCGGGCCTGTCCCGCCCCTCT < 41bp 0.474028659589459 0.80271919421107 0.2526921 0.89390147 prediction 0.60543838842214 Functional Gain - MND1 ENSG00000121211 UTR5 Human protein_coding chr4:154265825 chr4:154265827 . . 0 23 hm5C_associated_SNPs_101766 0 0 0 0 1 MND1 chr4:154265892 5'GT 154265892 Upstream 66bp
chrX 152086666 152086666 1 + C A UCEC 152086662 + 152086642 152086682 41 TCCTCCCCGCCCCTCCTCCTCTGGCTACAAGATGACCACTG TCCTCCCCGCCCCTCCTCCTCTGGATACAAGATGACCACTG < 41bp 0.596891434970594 0.899575918974328 0.25132948 0.44611272 prediction 0.605368968007468 Functional Gain - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152086662 chrX:152086666 synonymous SNV . 0 25 hm5C_associated_SNPs_101769 0 0 0 0 2 ZNF185 chrX:152086609 3'AG 152086609 Downstream 58bp
chrX 152086666 152086666 1 + C A UCEC 152086662 + 152086642 152086682 41 TCCTCCCCGCCCCTCCTCCTCTGGCTACAAGATGACCACTG TCCTCCCCGCCCCTCCTCCTCTGGATACAAGATGACCACTG < 41bp 0.596891434970594 0.899575918974328 0.25132948 0.44611272 prediction 0.605368968007468 Functional Gain - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152086662 chrX:152086666 synonymous SNV . 0 25 hm5C_associated_SNPs_101769 0 0 0 0 2 ZNF185 chrX:152086698 5'GT 152086698 Upstream 33bp
chr8 106331179 106331179 1 + C A COAD 106331175 + 106331155 106331195 41 GCAGCCGCCGCCGAGATGTCCCGGCGAAAGCAAAGCAAACC GCAGCCGCCGCCGAGATGTCCCGGAGAAAGCAAAGCAAACC < 41bp 0.528723941010062 0.831399971699081 0.8912704 0.8843546 prediction 0.605352061378038 Functional Gain - ZFPM2 ENSG00000169946 CDS Human protein_coding chr8:106331175 chr8:106331179 synonymous SNV . 0 25 hm5C_associated_SNPs_101770 0 0 1 0 1 ZFPM2 chr8:106331209 5'GT 106331209 Upstream 31bp
chr2 228162427 228162427 1 + C A UCEC 228162423 + 228162403 228162443 41 CAGGGGAGCCCCAGGTTTTCCTGGCCTCCCGGGCAGAAAAG CAGGGGAGCCCCAGGTTTTCCTGGACTCCCGGGCAGAAAAG < 41bp 0.417783136487706 0.802649606178716 0.7340628 0.6494155 prediction 0.605299212357431 Functional Gain - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228162423 chr2:228162427 synonymous SNV . 0 25 hm5C_associated_SNPs_101771 0 0 0 0 1 COL4A3 chr2:228162390 3'AG 228162390 Downstream 38bp
chr7 33296936 33296936 1 + C A rs113518488 33296932 + 33296912 33296952 41 TGCTTTTGGAAGATTTCTCCCTGGCTTTCTTCTGCCTGGTC TGCTTTTGGAAGATTTCTCCCTGGATTTCTTCTGCCTGGTC < 41bp 0.453225792246537 0.802590157005707 0.4365564 0.8421029 prediction 0.605180314011413 Functional Gain - BBS9 ENSG00000122507 CDS Human protein_coding chr7:33296932 chr7:33296936 synonymous SNV . 0 25 hm5C_associated_SNPs_101775 0 0 1 0 2 BBS9 chr7:33296848 3'AG 33296848 Downstream 89bp
chr7 33296936 33296936 1 + C A rs113518488 33296932 + 33296912 33296952 41 TGCTTTTGGAAGATTTCTCCCTGGCTTTCTTCTGCCTGGTC TGCTTTTGGAAGATTTCTCCCTGGATTTCTTCTGCCTGGTC < 41bp 0.453225792246537 0.802590157005707 0.4365564 0.8421029 prediction 0.605180314011413 Functional Gain - BBS9 ENSG00000122507 CDS Human protein_coding chr7:33296932 chr7:33296936 synonymous SNV . 0 25 hm5C_associated_SNPs_101775 0 0 1 0 2 BBS9 chr7:33297022 5'GT 33297022 Upstream 87bp
chr15 75188576 75188576 1 + T A rs543652740 75188572 + 75188552 75188592 41 CAGTACCCAGGTGATATCGGCTGCTTTGCCATCTACTTCCT CAGTACCCAGGTGATATCGGCTGCATTGCCATCTACTTCCT < 41bp 0.481380822105095 0.802544185415132 0.26142728 0.21314755 prediction 0.605088370830263 Functional Gain - MPI ENSG00000178802 CDS Human protein_coding chr15:75188572 chr15:75188576 nonsynonymous SNV 0.991 2 25 hm5C_associated_SNPs_101777 0 0 1 0 2 MPI chr15:75188493 3'AG 75188493 Downstream 84bp
chr15 75188576 75188576 1 + T A rs543652740 75188572 + 75188552 75188592 41 CAGTACCCAGGTGATATCGGCTGCTTTGCCATCTACTTCCT CAGTACCCAGGTGATATCGGCTGCATTGCCATCTACTTCCT < 41bp 0.481380822105095 0.802544185415132 0.26142728 0.21314755 prediction 0.605088370830263 Functional Gain - MPI ENSG00000178802 CDS Human protein_coding chr15:75188572 chr15:75188576 nonsynonymous SNV 0.991 2 25 hm5C_associated_SNPs_101777 0 0 1 0 2 MPI chr15:75188666 5'GT 75188666 Upstream 91bp
chr14 76107313 76107313 1 + C A BLCA 76107309 + 76107289 76107329 41 GGTCTTCAGCTTCTTTATGACTGGCTATCTCCCACTGGGAT GGTCTTCAGCTTCTTTATGACTGGATATCTCCCACTGGGAT < 41bp 0.409869256576335 0.802501781735519 0.45300508 0.4519934 prediction 0.605003563471039 Functional Gain - FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76107309 chr14:76107313 synonymous SNV . 0 25 hm5C_associated_SNPs_101779 0 0 1 0 2 FLVCR2 chr14:76107298 3'AG 76107298 Downstream 16bp
chr14 76107313 76107313 1 + C A BLCA 76107309 + 76107289 76107329 41 GGTCTTCAGCTTCTTTATGACTGGCTATCTCCCACTGGGAT GGTCTTCAGCTTCTTTATGACTGGATATCTCCCACTGGGAT < 41bp 0.409869256576335 0.802501781735519 0.45300508 0.4519934 prediction 0.605003563471039 Functional Gain - FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76107309 chr14:76107313 synonymous SNV . 0 25 hm5C_associated_SNPs_101779 0 0 1 0 2 FLVCR2 chr14:76107403 5'GT 76107403 Upstream 91bp
chr1 156878007 156878007 1 + C A rs113704391 156878003 + 156877983 156878023 41 CCCGGACGCCCGTTGCTTCCCGGCCAACGGCGCATGTCTGT CCCGGACGCCCGTTGCTTCCCGGCAAACGGCGCATGTCTGT < 41bp 0.597587238771913 0.900085854511642 0.26773593 0.5114542 prediction 0.604997231479458 Functional Gain - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156878003 chr1:156878007 synonymous SNV . 0 25 hm5C_associated_SNPs_101780 0 0 0 0 1 PEAR1 chr1:156877920 3'AG 156877920 Downstream 88bp
chr1 205035032 205035032 1 + T A KIRC 205035028 + 205035008 205035048 41 CGTCCAAGGAGGCCACAGTCCTGGTCCGAGGTGAGGGGTTT CGTCCAAGGAGGCCACAGTCCTGGACCGAGGTGAGGGGTTT < 41bp 0.513653674712355 0.816141335402953 0.67308474 0.832209 prediction 0.604975321381196 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205035028 chr1:205035032 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_101781 0 0 0 0 1 CNTN2 chr1:205035037 5'GT 205035037 Upstream 6bp
chr17 80011178 80011178 1 + T G COAD 80011176 + 80011156 80011196 41 GTGGAGCCCATGCAGATCGACGTGGACCCCCAGGAAGACCC GTGGAGCCCATGCAGATCGACGGGGACCCCCAGGAAGACCC < 41bp 0.554563702394916 0.857026415787018 0.61205417 0.90091026 prediction 0.604925426784203 Functional Gain - GPS1 ENSG00000169727 CDS Human protein_coding chr17:80011176 chr17:80011178 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_101782 0 0 1 0 3 GPS1 chr17:80011110 3'AG 80011110 Downstream 69bp
chr17 80011178 80011178 1 + T G COAD 80011176 + 80011156 80011196 41 GTGGAGCCCATGCAGATCGACGTGGACCCCCAGGAAGACCC GTGGAGCCCATGCAGATCGACGGGGACCCCCAGGAAGACCC < 41bp 0.554563702394916 0.857026415787018 0.61205417 0.90091026 prediction 0.604925426784203 Functional Gain - GPS1 ENSG00000169727 CDS Human protein_coding chr17:80011176 chr17:80011178 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_101782 0 0 1 0 3 GPS1 chr17:80011150 3'AG 80011150 Downstream 29bp
chr17 80011178 80011178 1 + T G COAD 80011176 + 80011156 80011196 41 GTGGAGCCCATGCAGATCGACGTGGACCCCCAGGAAGACCC GTGGAGCCCATGCAGATCGACGGGGACCCCCAGGAAGACCC < 41bp 0.554563702394916 0.857026415787018 0.61205417 0.90091026 prediction 0.604925426784203 Functional Gain - GPS1 ENSG00000169727 CDS Human protein_coding chr17:80011176 chr17:80011178 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_101782 0 0 1 0 3 GPS1 chr17:80011242 5'GT 80011242 Upstream 65bp
chr9 133573588 133573588 1 + C A rs201749338 133573584 + 133573564 133573604 41 TGGAAGGTGGAGACCAACTCCAGGCTGGATTCGGTCTTGCT TGGAAGGTGGAGACCAACTCCAGGATGGATTCGGTCTTGCT < 41bp 0.593293874642969 0.895700148820595 0.9080777 0.85940933 prediction 0.604812548355252 Functional Gain - EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133573584 chr9:133573588 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_101785 0 0 1 5 2 EXOSC2 chr9:133573549 3'AG 133573549 Downstream 40bp
chr9 133573588 133573588 1 + C A rs201749338 133573584 + 133573564 133573604 41 TGGAAGGTGGAGACCAACTCCAGGCTGGATTCGGTCTTGCT TGGAAGGTGGAGACCAACTCCAGGATGGATTCGGTCTTGCT < 41bp 0.593293874642969 0.895700148820595 0.9080777 0.85940933 prediction 0.604812548355252 Functional Gain - EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133573584 chr9:133573588 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_101785 0 0 1 5 2 EXOSC2 chr9:133573638 5'GT 133573638 Upstream 51bp
chr4 15826558 15826558 1 + C A rs1800561 15826554 + 15826534 15826574 41 GCCCATCAGTTCACACAGGTCCAGCGGGACATGTTCACCCT GCCCATCAGTTCACACAGGTCCAGAGGGACATGTTCACCCT < 41bp 0.419010604623572 0.802400215725179 0.14996281 0.3192071 prediction 0.604800431450357 Functional Gain - CD38 ENSG00000004468 CDS Human protein_coding chr4:15826554 chr4:15826558 synonymous SNV . 0 25 hm5C_associated_SNPs_101786 0 0 0 0 2 CD38 chr4:15826504 3'AG 15826504 Downstream 55bp
chr4 15826558 15826558 1 + C A rs1800561 15826554 + 15826534 15826574 41 GCCCATCAGTTCACACAGGTCCAGCGGGACATGTTCACCCT GCCCATCAGTTCACACAGGTCCAGAGGGACATGTTCACCCT < 41bp 0.419010604623572 0.802400215725179 0.14996281 0.3192071 prediction 0.604800431450357 Functional Gain - CD38 ENSG00000004468 CDS Human protein_coding chr4:15826554 chr4:15826558 synonymous SNV . 0 25 hm5C_associated_SNPs_101786 0 0 0 0 2 CD38 chr4:15826639 5'GT 15826639 Upstream 82bp
chr2 27373066 27373066 1 + C A UCEC 27373062 + 27373042 27373082 41 CTGCGCCAGGCCTTCTTGGCCTTGCAGGCTGCTCTGCCTGC CTGCGCCAGGCCTTCTTGGCCTTGAAGGCTGCTCTGCCTGC < 41bp 0.420242085322481 0.802392813184987 0.08867431 0.06685597 prediction 0.604785626369973 Functional Gain - TCF23 ENSG00000163792 CDS Human protein_coding chr2:27373062 chr2:27373066 nonsynonymous SNV 0.986 2 25 hm5C_associated_SNPs_101787 0 0 0 0 1 TCF23 chr2:27372991 3'AG 27372991 Downstream 76bp
chr16 56920913 56920913 1 + C A LUAD 56920909 + 56920889 56920929 41 GAGCTCCAGCTCATCGCCAACGGGCACACCAAGTGGCTGAA GAGCTCCAGCTCATCGCCAACGGGAACACCAAGTGGCTGAA < 41bp 0.400784462855737 0.802375205934172 0.8948134 0.90785766 prediction 0.604750411868345 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56920909 chr16:56920913 nonsynonymous SNV 0.399 2 25 hm5C_associated_SNPs_101790 0 0 1 0 2 SLC12A3 chr16:56920865 3'AG 56920865 Downstream 49bp
chr16 56920913 56920913 1 + C A LUAD 56920909 + 56920889 56920929 41 GAGCTCCAGCTCATCGCCAACGGGCACACCAAGTGGCTGAA GAGCTCCAGCTCATCGCCAACGGGAACACCAAGTGGCTGAA < 41bp 0.400784462855737 0.802375205934172 0.8948134 0.90785766 prediction 0.604750411868345 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56920909 chr16:56920913 nonsynonymous SNV 0.399 2 25 hm5C_associated_SNPs_101790 0 0 1 0 2 SLC12A3 chr16:56921005 5'GT 56921005 Upstream 93bp
chr19 7742562 7742562 1 + T G STAD 7742560 + 7742540 7742580 41 TATGAGAATATCACCTTGGCCTTCAAAAATCAGGACCATGC TATGAGAATATCACCTTGGCCTGCAAAAATCAGGACCATGC < 41bp 0.4926768129141 0.802254490908425 0.04345733 0.034804672 prediction 0.604508981816849 Functional Gain - MCEMP1 ENSG00000183019 CDS Human protein_coding chr19:7742560 chr19:7742562 nonsynonymous SNV 0.952 1 23 hm5C_associated_SNPs_101795 0 0 0 0 2 MCEMP1 chr19:7742523 3'AG 7742523 Downstream 40bp
chr19 7742562 7742562 1 + T G STAD 7742560 + 7742540 7742580 41 TATGAGAATATCACCTTGGCCTTCAAAAATCAGGACCATGC TATGAGAATATCACCTTGGCCTGCAAAAATCAGGACCATGC < 41bp 0.4926768129141 0.802254490908425 0.04345733 0.034804672 prediction 0.604508981816849 Functional Gain - MCEMP1 ENSG00000183019 CDS Human protein_coding chr19:7742560 chr19:7742562 nonsynonymous SNV 0.952 1 23 hm5C_associated_SNPs_101795 0 0 0 0 2 MCEMP1 chr19:7742612 5'GT 7742612 Upstream 51bp
chr2 179209068 179209068 1 + C A ACC 179209064 + 179209044 179209084 41 CAACTCGGCGCCGGCAGAGGCTAGCGGCAGCAGTGGCTACA CAACTCGGCGCCGGCAGAGGCTAGAGGCAGCAGTGGCTACA < 41bp 0.411314412270614 0.802239292113322 0.28948784 0.63824975 prediction 0.604478584226644 Functional Gain - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179209064 chr2:179209068 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_101797 0 0 0 0 2 OSBPL6 chr2:179209013 3'AG 179209013 Downstream 56bp
chr2 179209068 179209068 1 + C A ACC 179209064 + 179209044 179209084 41 CAACTCGGCGCCGGCAGAGGCTAGCGGCAGCAGTGGCTACA CAACTCGGCGCCGGCAGAGGCTAGAGGCAGCAGTGGCTACA < 41bp 0.411314412270614 0.802239292113322 0.28948784 0.63824975 prediction 0.604478584226644 Functional Gain - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179209064 chr2:179209068 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_101797 0 0 0 0 2 OSBPL6 chr2:179209087 5'GT 179209087 Upstream 20bp
chr12 53825025 53825025 1 + C A LAML 53825021 + 53825001 53825041 41 ATGCAGACCCAGAAGCACGGCTGACAGCTGAGTGTGTACAG ATGCAGACCCAGAAGCACGGCTGAAAGCTGAGTGTGTACAG < 41bp 0.481658466739913 0.802204959443225 0.082883835 0.29314512 prediction 0.60440991888645 Functional Gain - AMHR2 ENSG00000135409 CDS Human protein_coding chr12:53825021 chr12:53825025 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_101801 0 0 0 0 1 AMHR2 chr12:53824961 3'AG 53824961 Downstream 65bp
chr1 10510348 10510348 1 + T G rs556873478 10510345 + 10510325 10510365 41 CACGGCCACCGCTGCCCTGCCCCTGGAGGGTGGCCCCACCG CACGGCCACCGCTGCCCTGCCCCGGGAGGGTGGCCCCACCG < 41bp 0.43886622807331 0.80215595271009 0.33761072 0.77361953 prediction 0.60431190542018 Functional Gain - CORT ENSG00000241563 CDS Human protein_coding chr1:10510345 chr1:10510348 nonsynonymous SNV 0.203 2 24 hm5C_associated_SNPs_101806 0 0 0 0 1 CORT chr1:10510379 5'GT 10510379 Upstream 32bp
chr13 113798336 113798336 1 + C A UCEC 113798332 + 113798312 113798352 41 TGCTTGACTTCAACCAGACGCAGCCTGAGAGGGGCGACAAC TGCTTGACTTCAACCAGACGCAGCATGAGAGGGGCGACAAC < 41bp 0.399153036169156 0.802154198872404 0.0057125688 0.019113928 prediction 0.604308397744809 Functional Gain - F10 ENSG00000126218 CDS Human protein_coding chr13:113798332 chr13:113798336 nonsynonymous SNV 0.008 2 25 hm5C_associated_SNPs_101807 0 0 1 0 1 F10 chr13:113798409 5'GT 113798409 Upstream 74bp
chr12 14927825 14927825 1 + C A rs6645 14927821 + 14927801 14927841 41 CGCCGCCCTCAGGGAGCTGGCTCCCCCAGCAAAGGCCCTTT CGCCGCCCTCAGGGAGCTGGCTCCACCAGCAAAGGCCCTTT < 41bp 0.584523954343703 0.88665508620607 0.11528745 0.85257256 prediction 0.604262263724736 Functional Gain - H2AFJ ENSG00000246705 UTR3 Human protein_coding chr12:14927821 chr12:14927825 . . 0 25 hm5C_associated_SNPs_101808 0 0 1 0 1 H2AFJ chr12:14927910 5'GT 14927910 Upstream 86bp
chr22 50312459 50312459 1 + T G rs562220912 50312457 + 50312437 50312477 41 CCGCGCTGGGGCTCCTGCCGCTTCTGCTGCTGCTGCCGCCC CCGCGCTGGGGCTCCTGCCGCTGCTGCTGCTGCTGCCGCCC < 41bp 0.522183147327775 0.824300265826541 0.33667374 0.7595429 prediction 0.604234236997531 Functional Gain - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50312457 chr22:50312459 synonymous SNV . 0 23 hm5C_associated_SNPs_101810 0 0 1 0 1 CRELD2 chr22:50312546 5'GT 50312546 Upstream 88bp
chr1 104160612 104160612 1 + C A UCEC 104160608 + 104160588 104160628 41 AATGAAAATGTTGCAATTTACAACCCTTTCAGACCTTGGTG AATGAAAATGTTGCAATTTACAACACTTTCAGACCTTGGTG < 41bp 0.427532243203849 0.802114414246443 0.33525464 0.44398376 prediction 0.604228828492886 Functional Gain - AMY2A ENSG00000243480 CDS Human protein_coding chr1:104160608 chr1:104160612 nonsynonymous SNV 0.068 4 25 hm5C_associated_SNPs_101811 0 0 0 0 1 AMY2A chr1:104160576 3'AG 104160576 Downstream 37bp
chr9 109734366 109734366 1 + C A LUSC 109734362 + 109734342 109734382 41 GCTGCCCTGGCAAGGAACAACAGCCGTGTTAGCCCTGTGCC GCTGCCCTGGCAAGGAACAACAGCAGTGTTAGCCCTGTGCC < 41bp 0.404006363431203 0.802106476791112 0.3184646 0.52234656 prediction 0.604212953582224 Functional Gain - ZNF462 ENSG00000148143 CDS Human protein_coding chr9:109734362 chr9:109734366 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_101812 0 0 0 0 1 ZNF462 chr9:109734286 3'AG 109734286 Downstream 81bp
chr8 11291633 11291633 1 + C A rs192500917 11291629 + 11291609 11291649 41 TGTGAAGAAAGAAACGCAAACACCCCTAGGAACCAGGTTGG TGTGAAGAAAGAAACGCAAACACCACTAGGAACCAGGTTGG < 41bp 0.439201664058425 0.802102557544174 0.068632245 0.13749409 prediction 0.604205115088349 Functional Gain - FAM167A-AS1 ENSG00000184608 UTR5 Human antisense chr8:11291629 chr8:11291633 . . 0 25 hm5C_associated_SNPs_101813 0 0 0 1 1 FAM167A-AS1 chr8:11291644 5'GT 11291644 Upstream 12bp
chr1 155148098 155148098 1 + C A rs547877394 155148094 + 155148074 155148114 41 CCGCAGAACTCTCCCCAAGCCAGACCGCCTGGACCGGCTGC CCGCAGAACTCTCCCCAAGCCAGAACGCCTGGACCGGCTGC < 41bp 0.43972767142344 0.802062613189092 0.295812 0.83530366 prediction 0.604125226378183 Functional Gain - TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155148094 chr1:155148098 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_101815 0 0 0 0 1 TRIM46 chr1:155148123 5'GT 155148123 Upstream 26bp
chr1 158913641 158913641 1 + T G rs559228707 158913638 + 158913618 158913658 41 GGATAAAACAGGAAGTATGGCTGTAGTAGGAAAAGGAGAAT GGATAAAACAGGAAGTATGGCTGGAGTAGGAAAAGGAGAAT < 41bp 0.561794279972437 0.863854946720112 0.24647784 0.24986604 prediction 0.60412133349535 Functional Gain - PYHIN1 ENSG00000163564 CDS Human protein_coding chr1:158913638 chr1:158913641 nonsynonymous SNV 0.003 3 24 hm5C_associated_SNPs_101816 0 0 0 0 1 PYHIN1 chr1:158913580 3'AG 158913580 Downstream 62bp
chr18 19749546 19749546 1 + C A rs572370725 19749542 + 19749522 19749562 41 TATTCACCAGCAGCGCGGCGCAGACCCCGGACTCGCGCTCG TATTCACCAGCAGCGCGGCGCAGAACCCGGACTCGCGCTCG < 41bp 0.504540082307717 0.806564674686989 0.3632642 0.83337885 prediction 0.604049184758544 Functional Gain - GATA6 ENSG00000141448 UTR5 Human protein_coding chr18:19749542 chr18:19749546 . . 0 25 hm5C_associated_SNPs_101818 0 0 0 0 1 GATA6 chr18:19749643 5'GT 19749643 Upstream 98bp
chr1 150484990 150484990 1 + C A LUAD 150484986 + 150484966 150485006 41 GACATCTTGACCATTGACATCGGTCGAGTCACCCCCAACCT GACATCTTGACCATTGACATCGGTAGAGTCACCCCCAACCT < 41bp 0.40120857463668 0.801976577495502 0.6244641 0.8332801 prediction 0.603953154991004 Functional Gain - ECM1 ENSG00000143369 CDS Human protein_coding chr1:150484986 chr1:150484990 synonymous SNV . 0 25 hm5C_associated_SNPs_101820 0 0 1 0 1 ECM1 chr1:150485048 5'GT 150485048 Upstream 59bp
chr2 119735500 119735500 1 + T G LUSC 119735498 + 119735478 119735518 41 ACTAAGGGAGAGAAAGGAGACCTGGGTCTCCCAGGTGAGGG ACTAAGGGAGAGAAAGGAGACCGGGGTCTCCCAGGTGAGGG < 41bp 0.468960774522219 0.801948275633408 0.23089388 0.43408728 prediction 0.603896551266815 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119735498 chr2:119735500 nonsynonymous SNV 0.929 2 23 hm5C_associated_SNPs_101821 0 0 0 0 2 MARCO chr2:119735404 3'AG 119735404 Downstream 97bp
chr2 119735500 119735500 1 + T G LUSC 119735498 + 119735478 119735518 41 ACTAAGGGAGAGAAAGGAGACCTGGGTCTCCCAGGTGAGGG ACTAAGGGAGAGAAAGGAGACCGGGGTCTCCCAGGTGAGGG < 41bp 0.468960774522219 0.801948275633408 0.23089388 0.43408728 prediction 0.603896551266815 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119735498 chr2:119735500 nonsynonymous SNV 0.929 2 23 hm5C_associated_SNPs_101821 0 0 0 0 2 MARCO chr2:119735511 5'GT 119735511 Upstream 12bp
chr3 38038580 38038580 1 + T A GBM 38038576 + 38038556 38038596 41 TGGCTCTGGCAGGTGGAGCTCTCCTGGAACAGCTTTAATAA TGGCTCTGGCAGGTGGAGCTCTCCAGGAACAGCTTTAATAA < 41bp 0.472081174195229 0.801942090310733 0.4208913 0.952042 prediction 0.603884180621467 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38038576 chr3:38038580 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_101822 0 0 1 0 2 VILL chr3:38038568 3'AG 38038568 Downstream 13bp
chr3 38038580 38038580 1 + T A GBM 38038576 + 38038556 38038596 41 TGGCTCTGGCAGGTGGAGCTCTCCTGGAACAGCTTTAATAA TGGCTCTGGCAGGTGGAGCTCTCCAGGAACAGCTTTAATAA < 41bp 0.472081174195229 0.801942090310733 0.4208913 0.952042 prediction 0.603884180621467 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38038576 chr3:38038580 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_101822 0 0 1 0 2 VILL chr3:38038678 5'GT 38038678 Upstream 99bp
chr16 67911537 67911537 1 + T G SKCM 67911534 + 67911514 67911554 41 CTGTGAGGAGAGCAGCCCAACAGTGGCCCTGCTGCATGAAG CTGTGAGGAGAGCAGCCCAACAGGGGCCCTGCTGCATGAAG < 41bp 0.467162146486532 0.80186150643588 0.20403641 0.83609474 prediction 0.603723012871759 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67911534 chr16:67911537 nonsynonymous SNV 0.976 2 24 hm5C_associated_SNPs_101827 0 0 1 0 1 EDC4 chr16:67911559 5'GT 67911559 Upstream 23bp
chr17 37826284 37826284 1 + C A COAD 37826280 + 37826260 37826300 41 CCATCGACGTGCACCAGCCCCAGCCCCTGGGTGCTGGGAGC CCATCGACGTGCACCAGCCCCAGCACCTGGGTGCTGGGAGC < 41bp 0.577657011733969 0.879486701427278 0.311661 0.49982405 prediction 0.603659379386618 Functional Gain - PNMT ENSG00000141744 CDS Human protein_coding chr17:37826280 chr17:37826284 nonsynonymous SNV 0.699 4 25 hm5C_associated_SNPs_101828 0 0 0 0 1 PNMT chr17:37826204 3'AG 37826204 Downstream 81bp
chr9 119097224 119097224 1 + C A LUAD 119097220 + 119097200 119097240 41 GCCAGCCCTTCTACCACAGCCAGGCGGTACGTGTGAGCTTC GCCAGCCCTTCTACCACAGCCAGGAGGTACGTGTGAGCTTC < 41bp 0.413542560763864 0.801792125328386 0.3818196 0.4484915 prediction 0.603584250656771 Functional Gain - PAPPA ENSG00000182752 CDS Human protein_coding chr9:119097220 chr9:119097224 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_101832 0 0 0 0 1 PAPPA chr9:119097140 3'AG 119097140 Downstream 85bp
chr19 41096894 41096894 1 + C A LUAD 41096890 + 41096870 41096910 41 TTACTTCCTCAGCCTCCACTCAGCCTCCAGCAACACCTCCT TTACTTCCTCAGCCTCCACTCAGCATCCAGCAACACCTCCT < 41bp 0.420531119704855 0.801750250716043 0.0841136 0.23842266 prediction 0.603500501432085 Functional Gain - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41096890 chr19:41096894 synonymous SNV . 0 25 hm5C_associated_SNPs_101835 0 0 0 0 1 SHKBP1 chr19:41096882 3'AG 41096882 Downstream 13bp
chr1 150459936 150459936 1 + T G SKCM 150459933 + 150459913 150459953 41 TGGTGTGAAGGAACATGGCCCTGTATCAGAGGTGGCGGTGT TGGTGTGAAGGAACATGGCCCTGGATCAGAGGTGGCGGTGT < 41bp 0.43400031244019 0.801725228266147 0.02292177 0.09990564 prediction 0.603450456532294 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150459933 chr1:150459936 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_101836 0 0 1 0 1 TARS2 chr1:150459992 5'GT 150459992 Upstream 57bp
chr1 43825014 43825014 1 + T A BLCA 43825010 + 43824990 43825030 41 CCGCAGGCCCGGCCCCCTCACCCATGCGGGCCGCCAACCGA CCGCAGGCCCGGCCCCCTCACCCAAGCGGGCCGCCAACCGA < 41bp 0.500258491781076 0.801890959844648 0.110756546 0.086859554 prediction 0.603264936127144 Functional Gain - CDC20 ENSG00000117399 CDS Human protein_coding chr1:43825010 chr1:43825014 nonsynonymous SNV 0.920 1 25 hm5C_associated_SNPs_101842 0 0 1 0 1 CDC20 chr1:43825067 5'GT 43825067 Upstream 54bp
chr7 129919446 129919446 1 + C A LUAD 129919442 + 129919422 129919462 41 ATTACCCTCCACAGCTATTCCCAGCTGCTGATGTTCCCCTA ATTACCCTCCACAGCTATTCCCAGATGCTGATGTTCCCCTA < 41bp 0.396648733784594 0.801510547957906 0.60316 0.91364276 prediction 0.603021095915812 Functional Gain - CPA2 ENSG00000158516 CDS Human protein_coding chr7:129919442 chr7:129919446 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_101849 0 0 0 0 1 CPA2 chr7:129919502 5'GT 129919502 Upstream 57bp
chr14 62249051 62249051 1 + T A GBM 62249047 + 62249027 62249067 41 TGGTCAAGGGCAAGTCAAAGCAACTAGGAAAAAAGAGAAGA TGGTCAAGGGCAAGTCAAAGCAACAAGGAAAAAAGAGAAGA < 41bp 0.50273716876159 0.804233413827739 0.38487887 0.35646656 prediction 0.602992490132299 Functional Gain - SNAPC1 ENSG00000023608 CDS Human protein_coding chr14:62249047 chr14:62249051 synonymous SNV . 0 25 hm5C_associated_SNPs_101851 0 0 1 0 2 SNAPC1 chr14:62248965 3'AG 62248965 Downstream 87bp
chr14 62249051 62249051 1 + T A GBM 62249047 + 62249027 62249067 41 TGGTCAAGGGCAAGTCAAAGCAACTAGGAAAAAAGAGAAGA TGGTCAAGGGCAAGTCAAAGCAACAAGGAAAAAAGAGAAGA < 41bp 0.50273716876159 0.804233413827739 0.38487887 0.35646656 prediction 0.602992490132299 Functional Gain - SNAPC1 ENSG00000023608 CDS Human protein_coding chr14:62249047 chr14:62249051 synonymous SNV . 0 25 hm5C_associated_SNPs_101851 0 0 1 0 2 SNAPC1 chr14:62249115 5'GT 62249115 Upstream 65bp
chr10 75520505 75520505 1 + T A LUSC 75520501 + 75520481 75520521 41 ACCAGCCCGGGGCCCTCAGTCTAATTATGGAGGCCCCTACC ACCAGCCCGGGGCCCTCAGTCTAAATATGGAGGCCCCTACC < 41bp 0.512324077832067 0.813784705578374 0.23585904 0.26859063 prediction 0.602921255492615 Functional Gain - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75520501 chr10:75520505 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_101854 0 0 1 0 1 SEC24C chr10:75520471 3'AG 75520471 Downstream 35bp
chr6 18218071 18218071 1 + T G LGG 18218068 + 18218048 18218088 41 GGTGGAAGTGGGGAGGCCTACGATATCATTGCTGAAGACAT GGTGGAAGTGGGGAGGCCTACGAGATCATTGCTGAAGACAT < 41bp 0.569262740638646 0.870691605184242 0.3408025 0.8375282 prediction 0.602857729091193 Functional Gain - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18218068 chr6:18218071 nonsynonymous SNV 0.770 3 24 hm5C_associated_SNPs_101855 0 0 1 0 2 KDM1B chr6:18218111 5'GT 18218111 Upstream 41bp
chr6 18218071 18218071 1 + T G LGG 18218068 + 18218048 18218088 41 GGTGGAAGTGGGGAGGCCTACGATATCATTGCTGAAGACAT GGTGGAAGTGGGGAGGCCTACGAGATCATTGCTGAAGACAT < 41bp 0.569262740638646 0.870691605184242 0.3408025 0.8375282 prediction 0.602857729091193 Functional Gain - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18218068 chr6:18218071 nonsynonymous SNV 0.770 3 24 hm5C_associated_SNPs_101855 0 0 1 0 2 KDM1B chr6:18218116 5'GT 18218116 Upstream 46bp
chr12 106786915 106786915 1 + T A SKCM 106786911 + 106786891 106786931 41 TGGAAGAGTGCCAGAAAGCTCAGATTTTCACACAGATGCAG TGGAAGAGTGCCAGAAAGCTCAGAATTTCACACAGATGCAG < 41bp 0.498542041149038 0.801329170281955 0.2696416 0.36328924 prediction 0.602658340563909 Functional Gain - POLR3B ENSG00000013503 CDS Human protein_coding chr12:106786911 chr12:106786915 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_101858 0 0 0 0 1 POLR3B chr12:106786931 5'GT 106786931 Upstream 17bp
chr2 74683252 74683252 1 + C A STAD 74683248 + 74683228 74683268 41 AGATGAAGACAGTAATCTCTCTCCCTCTCCACTTCGGGACC AGATGAAGACAGTAATCTCTCTCCATCTCCACTTCGGGACC < 41bp 0.376497501345598 0.801257064057515 0.08063677 0.92458475 prediction 0.602514128115031 Functional Gain - INO80B ENSG00000115274 CDS Human protein_coding chr2:74683248 chr2:74683252 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_101863 0 0 1 0 1 INO80B chr2:74683230 3'AG 74683230 Downstream 23bp
chr16 32265016 32265016 1 + C A UCEC 32265012 + 32264992 32265032 41 AAAGGGTCGGTGGCCTCTCACTGCCTCCGCGGCAGGGTTGT AAAGGGTCGGTGGCCTCTCACTGCATCCGCGGCAGGGTTGT < 41bp 0.428234681531917 0.80125608227924 0.23239547 0.31653064 prediction 0.602512164558481 Functional Gain - TP53TG3D ENSG00000205456 CDS Human protein_coding chr16:32265012 chr16:32265016 synonymous SNV . 0 25 hm5C_associated_SNPs_101864 0 0 0 0 1 TP53TG3D chr16:32265036 5'GT 32265036 Upstream 21bp
chr5 76714217 76714217 1 + C A STAD 76714213 + 76714193 76714233 41 TGGAGAGTCACCACACCGCCCTGGCCTTCCAGCTCACGGTC TGGAGAGTCACCACACCGCCCTGGACTTCCAGCTCACGGTC < 41bp 0.398122740501429 0.801241764284077 0.03959906 0.101210624 prediction 0.602483528568154 Functional Gain - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76714213 chr5:76714217 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_101866 0 0 0 0 1 PDE8B chr5:76714271 5'GT 76714271 Upstream 55bp
chr17 40665988 40665988 1 + C A LUSC 40665984 + 40665964 40666004 41 TGCGGCTCTGGGCCCTCAGCCTCGCTCATGCGCGTGAGTAC TGCGGCTCTGGGCCCTCAGCCTCGATCATGCGCGTGAGTAC < 41bp 0.602923312358845 0.904157952929378 0.024313658 0.048261136 prediction 0.602469281141066 Functional Gain - ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40665984 chr17:40665988 nonsynonymous SNV 0.297 5 25 hm5C_associated_SNPs_101867 0 0 1 0 1 ATP6V0A1 chr17:40665996 5'GT 40665996 Upstream 9bp
chr5 72424284 72424284 1 + C A rs75514270 72424280 + 72424260 72424300 41 TCCTGAATCTTCAGCTTCTGCGGTCGCTGAGAGTCCTGGAA TCCTGAATCTTCAGCTTCTGCGGTAGCTGAGAGTCCTGGAA < 41bp 0.406205053816401 0.801227153653247 0.31390792 0.4985113 prediction 0.602454307306495 Functional Gain - TMEM171 ENSG00000157111 CDS Human protein_coding chr5:72424280 chr5:72424284 synonymous SNV . 0 25 hm5C_associated_SNPs_101868 0 0 1 0 2 TMEM171 chr5:72424217 3'AG 72424217 Downstream 68bp
chr5 72424284 72424284 1 + C A rs75514270 72424280 + 72424260 72424300 41 TCCTGAATCTTCAGCTTCTGCGGTCGCTGAGAGTCCTGGAA TCCTGAATCTTCAGCTTCTGCGGTAGCTGAGAGTCCTGGAA < 41bp 0.406205053816401 0.801227153653247 0.31390792 0.4985113 prediction 0.602454307306495 Functional Gain - TMEM171 ENSG00000157111 CDS Human protein_coding chr5:72424280 chr5:72424284 synonymous SNV . 0 25 hm5C_associated_SNPs_101868 0 0 1 0 2 TMEM171 chr5:72424358 5'GT 72424358 Upstream 75bp
chr20 13260508 13260508 1 + C A UCEC 13260504 + 13260484 13260524 41 GGGGTGGGACCATACAGCCCCAGGCCACCGGACTTTTGAAA GGGGTGGGACCATACAGCCCCAGGACACCGGACTTTTGAAA < 41bp 0.404041682301982 0.801160067335472 0.18167138 0.3012033 prediction 0.602320134670945 Functional Gain - ISM1 ENSG00000101230 CDS Human protein_coding chr20:13260504 chr20:13260508 synonymous SNV . 0 25 hm5C_associated_SNPs_101871 0 0 0 0 1 ISM1 chr20:13260545 5'GT 13260545 Upstream 38bp
chr14 52327481 52327481 1 + C A rs142851693 52327477 + 52327457 52327497 41 AGCTCCGGAGAGGGGAAAACCACGCTCCTCGGACCAAGCCT AGCTCCGGAGAGGGGAAAACCACGATCCTCGGACCAAGCCT < 41bp 0.570809858155069 0.871919854326257 0.36992306 0.37935144 prediction 0.602219992342375 Functional Gain - GNG2 ENSG00000186469 UTR5 Human protein_coding chr14:52327477 chr14:52327481 . . 0 25 hm5C_associated_SNPs_101872 0 0 0 0 1 GNG2 chr14:52327508 5'GT 52327508 Upstream 28bp
chr19 4323207 4323207 1 + C A LGG 4323203 + 4323183 4323223 41 CTGGACGCCCCCGTGCCCGACTGCCTGGGTGTGCACTGTGA CTGGACGCCCCCGTGCCCGACTGCATGGGTGTGCACTGTGA < 41bp 0.387265789417419 0.80110737852579 0.09416294 0.8323465 prediction 0.60221475705158 Functional Gain - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4323203 chr19:4323207 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_101873 0 0 1 0 1 FSD1 chr19:4323234 5'GT 4323234 Upstream 28bp
chr2 204732726 204732726 1 + C A LIHC 204732722 + 204732702 204732742 41 CTGAACCTGGCTACCAGGACCTGGCCCTGCACTCTCCTGTT CTGAACCTGGCTACCAGGACCTGGACCTGCACTCTCCTGTT < 41bp 0.580302064924915 0.88139800298508 0.03624782 0.15778843 prediction 0.60219187612033 Functional Gain - CTLA4 ENSG00000163599 CDS Human protein_coding chr2:204732722 chr2:204732726 nonsynonymous SNV 0.023 2 25 hm5C_associated_SNPs_101876 0 0 0 0 1 CTLA4 chr2:204732774 5'GT 204732774 Upstream 49bp
chr13 34404130 34404130 1 + T G STAD 34404128 + 34404108 34404148 41 GTAGTAGGTGCTTGGCGGTTCGTGTGCCTGCTCCCAGCATT GTAGTAGGTGCTTGGCGGTTCGGGTGCCTGCTCCCAGCATT < 41bp 0.476133381398654 0.80103331257457 0.15432301 0.57030475 prediction 0.60206662514914 Functional Gain - RFC3 ENSG00000133119 CDS Human protein_coding chr13:34404128 chr13:34404130 synonymous SNV . 0 23 hm5C_associated_SNPs_101877 0 0 1 0 1 RFC3 chr13:34404154 5'GT 34404154 Upstream 25bp
chr20 21689880 21689880 1 + C G LUAD 21689879 + 21689859 21689899 41 GTCGGCCTCCACCCTCTCTGCCGTGGGCGGCTTTCTCCCCG GTCGGCCTCCACCCTCTCTGCGGTGGGCGGCTTTCTCCCCG < 41bp 0.508818603415193 0.809821318410111 0.8758198 0.9024572 prediction 0.602005429989836 Functional Gain - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21689879 chr20:21689880 synonymous SNV . 0 22 hm5C_associated_SNPs_101878 0 0 0 0 1 PAX1 chr20:21689860 3'AG 21689860 Downstream 21bp
chrX 53456819 53456819 1 + C A UCEC 53456815 + 53456795 53456835 41 TGTGTAGATGCGCTCAGTAACCAGCTGCGCCTCGCCATGGA TGTGTAGATGCGCTCAGTAACCAGATGCGCCTCGCCATGGA < 41bp 0.424243056309866 0.800996416108621 0.58552337 0.90392303 prediction 0.601992832217241 Functional Gain - RIBC1 ENSG00000158423 CDS Human protein_coding chrX:53456815 chrX:53456819 nonsynonymous SNV 0.879 2 25 hm5C_associated_SNPs_101879 0 0 0 0 1 RIBC1 chrX:53456802 3'AG 53456802 Downstream 18bp
chr4 1803734 1803734 1 + C A COAD 1803730 + 1803710 1803750 41 CAAGGTGGGCCCGGACGGCACACCCTACGTTACCGTGCTCA CAAGGTGGGCCCGGACGGCACACCATACGTTACCGTGCTCA < 41bp 0.406367323718621 0.800950760711968 0.0574041 0.18705136 prediction 0.601901521423936 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1803730 chr4:1803734 synonymous SNV . 0 25 hm5C_associated_SNPs_101882 0 0 1 0 1 FGFR3 chr4:1803752 5'GT 1803752 Upstream 19bp
chr18 14179589 14179589 1 + C A LGG 14179585 + 14179565 14179605 41 GGAGACCTTGACGCCCTGGACAAGCAGCACAGGTAGCGAGG GGAGACCTTGACGCCCTGGACAAGAAGCACAGGTAGCGAGG < 41bp 0.543891469655081 0.844831295795553 0.12887874 0.1922473 prediction 0.601879652280945 Functional Gain - ANKRD20A5P ENSG00000186481 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr18:14179585 chr18:14179589 . . 0 25 hm5C_associated_SNPs_101884 0 0 1 0 1 ANKRD20A5P chr18:14179596 5'GT 14179596 Upstream 8bp
chr1 11897082 11897082 1 + C A rs41275500 11897078 + 11897058 11897098 41 ATCCAGCATCCTCACCCGGGCTGGCGAGCAGCGCAAACGGA ATCCAGCATCCTCACCCGGGCTGGAGAGCAGCGCAAACGGA < 41bp 0.406974965046934 0.800928220447683 0.07748151 0.122237206 prediction 0.601856440895367 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11897078 chr1:11897082 synonymous SNV . 0 25 hm5C_associated_SNPs_101886 0 0 1 0 1 CLCN6 chr1:11897056 3'AG 11897056 Downstream 27bp
chr6 160557602 160557602 1 + C G SKCM 160557601 + 160557581 160557621 41 TTCCCTCGAAGAGGATGTCACCGAAAAGCTGAGCCCTTCAT TTCCCTCGAAGAGGATGTCACGGAAAAGCTGAGCCCTTCAT < 41bp 0.493956709838526 0.800881404215215 0.28223455 0.75844336 prediction 0.601762808430431 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160557601 chr6:160557602 synonymous SNV . 0 22 hm5C_associated_SNPs_101889 0 0 0 0 2 SLC22A1 chr6:160557576 3'AG 160557576 Downstream 27bp
chr6 160557602 160557602 1 + C G SKCM 160557601 + 160557581 160557621 41 TTCCCTCGAAGAGGATGTCACCGAAAAGCTGAGCCCTTCAT TTCCCTCGAAGAGGATGTCACGGAAAAGCTGAGCCCTTCAT < 41bp 0.493956709838526 0.800881404215215 0.28223455 0.75844336 prediction 0.601762808430431 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160557601 chr6:160557602 synonymous SNV . 0 22 hm5C_associated_SNPs_101889 0 0 0 0 2 SLC22A1 chr6:160557682 5'GT 160557682 Upstream 81bp
chr19 36250358 36250358 1 + C A OV 36250354 + 36250334 36250374 41 ACTACTGGCCATCCCAGAGCCAGACCTGGTGTCCCAAGGTG ACTACTGGCCATCCCAGAGCCAGAACTGGTGTCCCAAGGTG < 41bp 0.400988358581707 0.800869620844254 0.28909752 0.86823124 prediction 0.601739241688507 Functional Gain - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36250354 chr19:36250358 nonsynonymous SNV 0.010 0 25 hm5C_associated_SNPs_101890 0 0 1 0 2 PROSER3 chr19:36250275 3'AG 36250275 Downstream 84bp
chr19 36250358 36250358 1 + C A OV 36250354 + 36250334 36250374 41 ACTACTGGCCATCCCAGAGCCAGACCTGGTGTCCCAAGGTG ACTACTGGCCATCCCAGAGCCAGAACTGGTGTCCCAAGGTG < 41bp 0.400988358581707 0.800869620844254 0.28909752 0.86823124 prediction 0.601739241688507 Functional Gain - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36250354 chr19:36250358 nonsynonymous SNV 0.010 0 25 hm5C_associated_SNPs_101890 0 0 1 0 2 PROSER3 chr19:36250371 5'GT 36250371 Upstream 14bp
chr11 723311 723311 1 + C G rs60889456 723310 + 723290 723330 41 CCACTTCAGAGCCCACCCCCCCGGGGGATGCCCTACCACCA CCACTTCAGAGCCCACCCCCCGGGGGGATGCCCTACCACCA < 41bp 0.503109845206778 0.803974975700395 0.9387065 0.9469237 prediction 0.601730260987235 Functional Gain - EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:723310 chr11:723311 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_101891 0 0 0 0 2 EPS8L2 chr11:723241 3'AG 723241 Downstream 71bp
chr11 723311 723311 1 + C G rs60889456 723310 + 723290 723330 41 CCACTTCAGAGCCCACCCCCCCGGGGGATGCCCTACCACCA CCACTTCAGAGCCCACCCCCCGGGGGGATGCCCTACCACCA < 41bp 0.503109845206778 0.803974975700395 0.9387065 0.9469237 prediction 0.601730260987235 Functional Gain - EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:723310 chr11:723311 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_101891 0 0 0 0 2 EPS8L2 chr11:723353 5'GT 723353 Upstream 43bp
chr11 17742464 17742464 1 + C A LUSC 17742460 + 17742440 17742480 41 TGTTTGCAGATGGACTACAGCGGCCCCCCGAGCGGCGCCCG TGTTTGCAGATGGACTACAGCGGCACCCCGAGCGGCGCCCG < 41bp 0.592810732607058 0.893584956118978 0.63011146 0.89647967 prediction 0.60154844702384 Functional Gain - MYOD1 ENSG00000129152 CDS Human protein_coding chr11:17742460 chr11:17742464 nonsynonymous SNV 0.983 5 25 hm5C_associated_SNPs_101895 0 0 0 0 2 MYOD1 chr11:17742449 3'AG 17742449 Downstream 16bp
chr11 17742464 17742464 1 + C A LUSC 17742460 + 17742440 17742480 41 TGTTTGCAGATGGACTACAGCGGCCCCCCGAGCGGCGCCCG TGTTTGCAGATGGACTACAGCGGCACCCCGAGCGGCGCCCG < 41bp 0.592810732607058 0.893584956118978 0.63011146 0.89647967 prediction 0.60154844702384 Functional Gain - MYOD1 ENSG00000129152 CDS Human protein_coding chr11:17742460 chr11:17742464 nonsynonymous SNV 0.983 5 25 hm5C_associated_SNPs_101895 0 0 0 0 2 MYOD1 chr11:17742527 5'GT 17742527 Upstream 64bp
chr4 113350370 113350370 1 + C A UCEC 113350366 + 113350346 113350386 41 AGAAGCCTGCAAGCTGGCAGCTGCCTTCAGTGCCTATACGC AGAAGCCTGCAAGCTGGCAGCTGCATTCAGTGCCTATACGC < 41bp 0.394172165212526 0.800762407729537 0.36048666 0.59300137 prediction 0.601524815459074 Functional Gain - ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113350366 chr4:113350370 synonymous SNV . 0 25 hm5C_associated_SNPs_101897 0 0 0 0 2 ALPK1 chr4:113350305 3'AG 113350305 Downstream 66bp
chr4 113350370 113350370 1 + C A UCEC 113350366 + 113350346 113350386 41 AGAAGCCTGCAAGCTGGCAGCTGCCTTCAGTGCCTATACGC AGAAGCCTGCAAGCTGGCAGCTGCATTCAGTGCCTATACGC < 41bp 0.394172165212526 0.800762407729537 0.36048666 0.59300137 prediction 0.601524815459074 Functional Gain - ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113350366 chr4:113350370 synonymous SNV . 0 25 hm5C_associated_SNPs_101897 0 0 0 0 2 ALPK1 chr4:113350409 5'GT 113350409 Upstream 40bp
chr19 22785614 22785614 1 + C A LUSC 22785610 + 22785590 22785630 41 GAGTCTACACTGCCCTCTCTCAGCCAGGGGGCAGCGCTGAA GAGTCTACACTGCCCTCTCTCAGCAAGGGGGCAGCGCTGAA < 41bp 0.572409689272812 0.873081625394031 0.56743914 0.8989382 prediction 0.601343872242438 Functional Gain - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human other chr19:22785610 chr19:22785614 . . 0 25 hm5C_associated_SNPs_101902 0 0 0 0 1 GOLGA2P9 chr19:22785590 3'AG 22785590 Downstream 25bp
chr20 30617636 30617636 1 + T A SKCM 30617632 + 30617612 30617652 41 ACGGAGACCGGCGCAAGTTCCTCCTCCTTGGTGAGCCCCCG ACGGAGACCGGCGCAAGTTCCTCCACCTTGGTGAGCCCCCG < 41bp 0.536259846227218 0.83685957672274 0.44246763 0.95026237 prediction 0.601199460991044 Functional Gain - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30617632 chr20:30617636 nonsynonymous SNV 0.847 4 25 hm5C_associated_SNPs_101907 0 0 0 1 1 CCM2L chr20:30617641 5'GT 30617641 Upstream 6bp
chr21 33785228 33785228 1 + C A rs146014823 33785224 + 33785204 33785244 41 CCCGTGCAGCATCCCGGCCTCCGCCGGCAGGTAGAGCCGCC CCCGTGCAGCATCCCGGCCTCCGCAGGCAGGTAGAGCCGCC < 41bp 0.566366495596736 0.866890465751503 0.12091172 0.5863575 prediction 0.601047940309533 Functional Gain - EVA1C ENSG00000166979 CDS Human protein_coding chr21:33785224 chr21:33785228 synonymous SNV . 0 25 hm5C_associated_SNPs_101911 0 0 0 0 1 EVA1C chr21:33785321 5'GT 33785321 Upstream 94bp
chr14 67664950 67664950 1 + T G UCEC 67664948 + 67664928 67664968 41 CTCTCTGCACCCCACACTCCCATGATCCGAGAGATCTTCAA CTCTCTGCACCCCACACTCCCAGGATCCGAGAGATCTTCAA < 41bp 0.549887303432215 0.850335986780243 0.08470562 0.468306 prediction 0.600897366696056 Functional Gain - FAM71D ENSG00000172717 CDS Human protein_coding chr14:67664948 chr14:67664950 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_101914 0 0 0 0 2 FAM71D chr14:67664853 3'AG 67664853 Downstream 98bp
chr14 67664950 67664950 1 + T G UCEC 67664948 + 67664928 67664968 41 CTCTCTGCACCCCACACTCCCATGATCCGAGAGATCTTCAA CTCTCTGCACCCCACACTCCCAGGATCCGAGAGATCTTCAA < 41bp 0.549887303432215 0.850335986780243 0.08470562 0.468306 prediction 0.600897366696056 Functional Gain - FAM71D ENSG00000172717 CDS Human protein_coding chr14:67664948 chr14:67664950 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_101914 0 0 0 0 2 FAM71D chr14:67665037 5'GT 67665037 Upstream 88bp
chr2 128408376 128408376 1 + T G UCEC 128408373 + 128408353 128408393 41 TCTCCCTGGCCACGGCAGAGCAATGTGGCCAGGAGACGCCA TCTCCCTGGCCACGGCAGAGCAAGGTGGCCAGGAGACGCCA < 41bp 0.592755939168435 0.893204050626559 0.058057994 0.6394693 prediction 0.600896222916246 Functional Gain - GPR17 ENSG00000144230 CDS Human protein_coding chr2:128408373 chr2:128408376 nonsynonymous SNV 0.954 2 24 hm5C_associated_SNPs_101915 0 0 0 0 1 GPR17 chr2:128408290 3'AG 128408290 Downstream 87bp
chrX 130220635 130220635 1 + T A HNSC 130220631 + 130220611 130220651 41 CCTTGCTCAAAGCAAGCCTTCTGATGAAGGTCAGTTCCCTG CCTTGCTCAAAGCAAGCCTTCTGAAGAAGGTCAGTTCCCTG < 41bp 0.492505065302651 0.800346446802125 0.17988992 0.29725212 prediction 0.600692893604249 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220631 chrX:130220635 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_101924 0 0 0 0 1 ARHGAP36 chrX:130220639 5'GT 130220639 Upstream 5bp
chr19 17887482 17887482 1 + C G HNSC 17887481 + 17887461 17887501 41 CCCCAGAGACCTCGGTCTGCCCCCAGAACCAGCAGGTGGGT CCCCAGAGACCTCGGTCTGCCGCCAGAACCAGCAGGTGGGT < 41bp 0.502685533567663 0.803004482928449 0.010017723 0.24726415 prediction 0.600637898721572 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17887481 chr19:17887482 nonsynonymous SNV 0.397 0 22 hm5C_associated_SNPs_101927 0 0 1 0 2 FCHO1 chr19:17887444 3'AG 17887444 Downstream 39bp
chr19 17887482 17887482 1 + C G HNSC 17887481 + 17887461 17887501 41 CCCCAGAGACCTCGGTCTGCCCCCAGAACCAGCAGGTGGGT CCCCAGAGACCTCGGTCTGCCGCCAGAACCAGCAGGTGGGT < 41bp 0.502685533567663 0.803004482928449 0.010017723 0.24726415 prediction 0.600637898721572 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17887481 chr19:17887482 nonsynonymous SNV 0.397 0 22 hm5C_associated_SNPs_101927 0 0 1 0 2 FCHO1 chr19:17887495 5'GT 17887495 Upstream 14bp
chr10 115534717 115534717 1 + C A LUAD 115534713 + 115534693 115534733 41 AATTGATTGGTGTCTTTCCCCTGCCGATGTGGAAGCACAGA AATTGATTGGTGTCTTTCCCCTGCAGATGTGGAAGCACAGA < 41bp 0.411799668461726 0.800197186536547 0.1038599 0.16527134 prediction 0.600394373073094 Functional Gain - PLEKHS1 ENSG00000148735 CDS Human protein_coding chr10:115534713 chr10:115534717 synonymous SNV . 0 25 hm5C_associated_SNPs_101937 0 0 0 0 2 PLEKHS1 chr10:115534752 5'GT 115534752 Upstream 36bp
chr10 115534717 115534717 1 + C A LUAD 115534713 + 115534693 115534733 41 AATTGATTGGTGTCTTTCCCCTGCCGATGTGGAAGCACAGA AATTGATTGGTGTCTTTCCCCTGCAGATGTGGAAGCACAGA < 41bp 0.411799668461726 0.800197186536547 0.1038599 0.16527134 prediction 0.600394373073094 Functional Gain - PLEKHS1 ENSG00000148735 CDS Human protein_coding chr10:115534713 chr10:115534717 synonymous SNV . 0 25 hm5C_associated_SNPs_101937 0 0 0 0 2 PLEKHS1 chr10:115534794 5'GT 115534794 Upstream 78bp
chr16 23387172 23387172 1 + C A LUAD 23387168 + 23387148 23387188 41 CTGCAACAACCGGGACTTCCCAGACTGGGGTGAGCGGGGGC CTGCAACAACCGGGACTTCCCAGAATGGGGTGAGCGGGGGC < 41bp 0.593806750449499 0.893908479889571 0.56172633 0.5152318 prediction 0.600203458880143 Functional Gain - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23387168 chr16:23387172 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_101942 0 0 0 0 1 SCNN1B chr16:23387176 5'GT 23387176 Upstream 5bp
chr13 42729866 42729866 1 + C A THCA 42729862 + 42729842 42729882 41 AACTGGTACGCCTGCTCCCACGCCCGACCCACCTTCTGTAA AACTGGTACGCCTGCTCCCACGCCAGACCCACCTTCTGTAA < 41bp 0.402466273163989 0.800095905023606 0.11932656 0.2983568 prediction 0.600191810047211 Functional Gain - DGKH ENSG00000102780 CDS Human protein_coding chr13:42729862 chr13:42729866 synonymous SNV . 0 25 hm5C_associated_SNPs_101943 0 0 0 0 2 DGKH chr13:42729803 3'AG 42729803 Downstream 64bp
chr13 42729866 42729866 1 + C A THCA 42729862 + 42729842 42729882 41 AACTGGTACGCCTGCTCCCACGCCCGACCCACCTTCTGTAA AACTGGTACGCCTGCTCCCACGCCAGACCCACCTTCTGTAA < 41bp 0.402466273163989 0.800095905023606 0.11932656 0.2983568 prediction 0.600191810047211 Functional Gain - DGKH ENSG00000102780 CDS Human protein_coding chr13:42729862 chr13:42729866 synonymous SNV . 0 25 hm5C_associated_SNPs_101943 0 0 0 0 2 DGKH chr13:42729935 5'GT 42729935 Upstream 70bp
chr19 49464818 49464818 1 + C A OV 49464814 + 49464794 49464834 41 CCTCCTCTCCTACTTTGGGACGCCCACGTGGCAGACCGTGA CCTCCTCTCCTACTTTGGGACGCCAACGTGGCAGACCGTGA < 41bp 0.404806200122063 0.800081032016726 0.08776918 0.46302783 prediction 0.600162064033452 Functional Gain - BAX ENSG00000087088 CDS Human protein_coding chr19:49464814 chr19:49464818 synonymous SNV . 0 25 hm5C_associated_SNPs_101945 0 0 1 1 1 BAX chr19:49464789 3'AG 49464789 Downstream 30bp
chr6 42985044 42985044 1 + T G TGCT 42985041 + 42985021 42985061 41 GGTTACTGCTCTGGTGAAGACTATGAGACACTGCGTCAGAT GGTTACTGCTCTGGTGAAGACTAGGAGACACTGCGTCAGAT < 41bp 0.426020502536933 0.800034501409411 0.018059492 0.03334087 prediction 0.600069002818821 Functional Gain - KLHDC3 ENSG00000124702 CDS Human protein_coding chr6:42985041 chr6:42985044 stopgain 0.998 1 24 hm5C_associated_SNPs_101948 0 0 1 0 1 KLHDC3 chr6:42985084 5'GT 42985084 Upstream 41bp
chr4 42403086 42403086 1 + T G SKCM 42403084 + 42403064 42403104 41 ATCTTCATTGCGTTCATCATCCTGGGCTCTGTAGTGGCTAT ATCTTCATTGCGTTCATCATCCGGGGCTCTGTAGTGGCTAT < 41bp 0.478023116507522 0.800033975132693 0.784516 0.93501616 prediction 0.600067950265385 Functional Gain - SHISA3 ENSG00000178343 CDS Human protein_coding chr4:42403084 chr4:42403086 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_101949 0 0 1 0 1 SHISA3 chr4:42403029 3'AG 42403029 Downstream 58bp
chr3 122329499 122329499 1 + C A rs143268642 122329495 + 122329475 122329515 41 AGTAGGTAACATATTCATGACAAGCGGCTGCAATCTGGACT AGTAGGTAACATATTCATGACAAGAGGCTGCAATCTGGACT < 41bp 0.413546071364855 0.799946458130094 0.07861316 0.20193684 prediction 0.599892916260187 Functional Gain - PARP15 ENSG00000173200 CDS Human protein_coding chr3:122329495 chr3:122329499 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_101951 0 0 0 0 1 PARP15 chr3:122329577 5'GT 122329577 Upstream 79bp
chr1 154218817 154218817 1 + C A UCEC 154218813 + 154218793 154218833 41 CGAAGCAGACTGCCATATCACAGCCTGCTTCAGGGAACACA CGAAGCAGACTGCCATATCACAGCATGCTTCAGGGAACACA < 41bp 0.398983292037399 0.799905802554392 0.26617563 0.200762 prediction 0.599811605108785 Functional Gain - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154218813 chr1:154218817 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_101953 0 0 1 0 1 UBAP2L chr1:154218851 5'GT 154218851 Upstream 35bp
chr8 144102376 144102376 1 + T G LGG 144102373 + 144102353 144102393 41 CAGAATGAAGATCTTCTTGCCAGTGCTGCTGGCTGCCCTTC CAGAATGAAGATCTTCTTGCCAGGGCTGCTGGCTGCCCTTC < 41bp 0.58889067629657 0.888771147128228 0.16596463 0.9360623 prediction 0.599760941663316 Functional Gain - LY6E ENSG00000160932 CDS Human protein_coding chr8:144102373 chr8:144102376 nonsynonymous SNV 0.352 2 24 hm5C_associated_SNPs_101955 0 0 1 6 3 LY6E chr8:144102300 3'AG 144102300 Downstream 77bp
chr8 144102376 144102376 1 + T G LGG 144102373 + 144102353 144102393 41 CAGAATGAAGATCTTCTTGCCAGTGCTGCTGGCTGCCCTTC CAGAATGAAGATCTTCTTGCCAGGGCTGCTGGCTGCCCTTC < 41bp 0.58889067629657 0.888771147128228 0.16596463 0.9360623 prediction 0.599760941663316 Functional Gain - LY6E ENSG00000160932 CDS Human protein_coding chr8:144102373 chr8:144102376 nonsynonymous SNV 0.352 2 24 hm5C_associated_SNPs_101955 0 0 1 6 3 LY6E chr8:144102305 3'AG 144102305 Downstream 72bp
chr8 144102376 144102376 1 + T G LGG 144102373 + 144102353 144102393 41 CAGAATGAAGATCTTCTTGCCAGTGCTGCTGGCTGCCCTTC CAGAATGAAGATCTTCTTGCCAGGGCTGCTGGCTGCCCTTC < 41bp 0.58889067629657 0.888771147128228 0.16596463 0.9360623 prediction 0.599760941663316 Functional Gain - LY6E ENSG00000160932 CDS Human protein_coding chr8:144102373 chr8:144102376 nonsynonymous SNV 0.352 2 24 hm5C_associated_SNPs_101955 0 0 1 6 3 LY6E chr8:144102408 5'GT 144102408 Upstream 33bp
chr11 61165269 61165269 1 + C A rs11230683 61165265 + 61165245 61165285 41 GGTACAAAGGGAAACCTCTGCCAGCGAAAGATGCCGCTCAG GGTACAAAGGGAAACCTCTGCCAGAGAAAGATGCCGCTCAG < 41bp 0.40830086915784 0.79987768267709 0.31255794 0.67342615 prediction 0.59975536535418 Functional Gain - TMEM216 ENSG00000187049 CDS Human protein_coding chr11:61165265 chr11:61165269 synonymous SNV . 0 25 hm5C_associated_SNPs_101956 1 0 0 0 1 TMEM216 chr11:61165246 3'AG 61165246 Downstream 24bp
chr16 31341725 31341725 1 + T A UCEC 31341721 + 31341701 31341741 41 GCTACCCTCAAAGGCAACCTCTCGTTTGACTGGTACATCAA GCTACCCTCAAAGGCAACCTCTCGATTGACTGGTACATCAA < 41bp 0.544900773001547 0.844721231478266 0.1557324 0.9282379 prediction 0.599640916953438 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31341721 chr16:31341725 nonsynonymous SNV 0.616 3 25 hm5C_associated_SNPs_101960 0 0 0 0 2 ITGAM chr16:31341629 3'AG 31341629 Downstream 97bp
chr16 31341725 31341725 1 + T A UCEC 31341721 + 31341701 31341741 41 GCTACCCTCAAAGGCAACCTCTCGTTTGACTGGTACATCAA GCTACCCTCAAAGGCAACCTCTCGATTGACTGGTACATCAA < 41bp 0.544900773001547 0.844721231478266 0.1557324 0.9282379 prediction 0.599640916953438 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31341721 chr16:31341725 nonsynonymous SNV 0.616 3 25 hm5C_associated_SNPs_101960 0 0 0 0 2 ITGAM chr16:31341742 5'GT 31341742 Upstream 18bp
chr10 50857604 50857604 1 + C A LUAD 50857600 + 50857580 50857620 41 GAGCAGACTCCGTCAGCGAGCTCCCCGCCCCCCGGAGGCTG GAGCAGACTCCGTCAGCGAGCTCCACGCCCCCCGGAGGCTG < 41bp 0.377543751013592 0.79981186246604 0.11026248 0.4939734 prediction 0.59962372493208 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50857600 chr10:50857604 nonsynonymous SNV 0.324 5 25 hm5C_associated_SNPs_101962 0 0 0 0 2 CHAT chr10:50857554 3'AG 50857554 Downstream 51bp
chr10 50857604 50857604 1 + C A LUAD 50857600 + 50857580 50857620 41 GAGCAGACTCCGTCAGCGAGCTCCCCGCCCCCCGGAGGCTG GAGCAGACTCCGTCAGCGAGCTCCACGCCCCCCGGAGGCTG < 41bp 0.377543751013592 0.79981186246604 0.11026248 0.4939734 prediction 0.59962372493208 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50857600 chr10:50857604 nonsynonymous SNV 0.324 5 25 hm5C_associated_SNPs_101962 0 0 0 0 2 CHAT chr10:50857682 5'GT 50857682 Upstream 79bp
chr2 26609349 26609349 1 + T A LUSC 26609345 + 26609325 26609365 41 CCTCTTACGTTGAGAGCATTCTCCTGTATACATTAACAACT CCTCTTACGTTGAGAGCATTCTCCAGTATACATTAACAACT < 41bp 0.532477382246203 0.832269714087816 0.108522296 0.9350652 prediction 0.599584663683227 Functional Gain - SELENOI ENSG00000138018 CDS Human protein_coding chr2:26609345 chr2:26609349 unknown 0.684 4 25 hm5C_associated_SNPs_101964 0 0 1 0 1 SELENOI chr2:26609404 5'GT 26609404 Upstream 56bp
chr20 9498735 9498735 1 + C G BRCA 9498734 + 9498714 9498754 41 ACCTCTCTGCCTTGGTCACCCCCGCTGGGAAGTCCTATGAG ACCTCTCTGCCTTGGTCACCCGCGCTGGGAAGTCCTATGAG < 41bp 0.507826329055753 0.807573483255031 0.07399404 0.28134012 prediction 0.599494308398556 Functional Gain - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9498734 chr20:9498735 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_101966 0 0 0 0 1 LAMP5 chr20:9498687 3'AG 9498687 Downstream 49bp
chr18 10550152 10550152 1 + C A LGG 10550148 + 10550128 10550168 41 TCACCTGCAACACCACAGGCCAAGCCTGATGGTGTCACTGC TCACCTGCAACACCACAGGCCAAGACTGATGGTGTCACTGC < 41bp 0.42691211499399 0.799716918692913 0.13056993 0.18880433 prediction 0.599433837385827 Functional Gain - NAPG ENSG00000134265 CDS Human protein_coding chr18:10550148 chr18:10550152 nonsynonymous SNV 0.209 0 25 hm5C_associated_SNPs_101968 0 0 1 0 1 NAPG chr18:10550074 3'AG 10550074 Downstream 79bp
chr7 75614956 75614956 1 + C A SKCM 75614952 + 75614932 75614972 41 TGTGGAGTACGAGACCAAGGCTGGCCGCATCAACAAGGGCG TGTGGAGTACGAGACCAAGGCTGGACGCATCAACAAGGGCG < 41bp 0.596964105525187 0.89667411006057 0.5414859 0.7603035 prediction 0.599420009070766 Functional Gain - POR ENSG00000127948 CDS Human protein_coding chr7:75614952 chr7:75614956 synonymous SNV . 0 25 hm5C_associated_SNPs_101970 0 0 1 0 1 POR chr7:75614897 3'AG 75614897 Downstream 60bp
chr18 908347 908347 1 + C A rs148570945 908343 + 908323 908363 41 CGCCGGGAAGCACCTGCAGTCGCTCGTGGCCCGGGGCGTGG CGCCGGGAAGCACCTGCAGTCGCTAGTGGCCCGGGGCGTGG < 41bp 0.601706744052453 0.901391310391805 0.07652041 0.11561346 prediction 0.599369132678704 Functional Gain - ADCYAP1 ENSG00000141433 CDS Human protein_coding chr18:908343 chr18:908347 synonymous SNV . 0 25 hm5C_associated_SNPs_101972 0 0 0 0 2 ADCYAP1 chr18:908266 3'AG 908266 Downstream 82bp
chr18 908347 908347 1 + C A rs148570945 908343 + 908323 908363 41 CGCCGGGAAGCACCTGCAGTCGCTCGTGGCCCGGGGCGTGG CGCCGGGAAGCACCTGCAGTCGCTAGTGGCCCGGGGCGTGG < 41bp 0.601706744052453 0.901391310391805 0.07652041 0.11561346 prediction 0.599369132678704 Functional Gain - ADCYAP1 ENSG00000141433 CDS Human protein_coding chr18:908343 chr18:908347 synonymous SNV . 0 25 hm5C_associated_SNPs_101972 0 0 0 0 2 ADCYAP1 chr18:908364 5'GT 908364 Upstream 18bp
chrX 128884472 128884472 1 + C A LUSC 128884468 + 128884448 128884488 41 CACTTGGCAGGAGAAAGTATCTGGCGTCCGAAGCCAGATGC CACTTGGCAGGAGAAAGTATCTGGAGTCCGAAGCCAGATGC < 41bp 0.597032584627524 0.896599924823997 0.90213 0.9193611 prediction 0.599134680392946 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128884468 chrX:128884472 synonymous SNV . 0 25 hm5C_associated_SNPs_101974 0 0 0 0 2 XPNPEP2 chrX:128884444 3'AG 128884444 Downstream 29bp
chrX 128884472 128884472 1 + C A LUSC 128884468 + 128884448 128884488 41 CACTTGGCAGGAGAAAGTATCTGGCGTCCGAAGCCAGATGC CACTTGGCAGGAGAAAGTATCTGGAGTCCGAAGCCAGATGC < 41bp 0.597032584627524 0.896599924823997 0.90213 0.9193611 prediction 0.599134680392946 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128884468 chrX:128884472 synonymous SNV . 0 25 hm5C_associated_SNPs_101974 0 0 0 0 2 XPNPEP2 chrX:128884545 5'GT 128884545 Upstream 74bp
chr1 158813865 158813865 1 + C A LUAD 158813861 + 158813841 158813881 41 TCTGCAGCTGTGGATCATCCCCCACTACCCCAGACCTCATC TCTGCAGCTGTGGATCATCCCCCAATACCCCAGACCTCATC < 41bp 0.406447937871592 0.799539073410896 0.042396158 0.2437151 prediction 0.599078146821792 Functional Gain - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813861 chr1:158813865 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_101975 0 0 0 0 1 MNDA chr1:158813912 5'GT 158813912 Upstream 48bp
chr1 167992241 167992241 1 + T G SKCM 167992238 + 167992218 167992258 41 TGTTTCAGATTCTCCTTCTTCTGTGGTTAACAAACAGCTCG TGTTTCAGATTCTCCTTCTTCTGGGGTTAACAAACAGCTCG < 41bp 0.439973956921078 0.79952706099221 0.26205137 0.8436076 prediction 0.599054121984421 Functional Gain - DCAF6 ENSG00000143164 CDS Human protein_coding chr1:167992238 chr1:167992241 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_101978 0 0 1 0 1 DCAF6 chr1:167992226 3'AG 167992226 Downstream 16bp
chr9 75773694 75773694 1 + C A UCEC 75773690 + 75773670 75773710 41 CAATCCATCCTCGGATGTCGCTGCCTTGCATAAGGCCATAA CAATCCATCCTCGGATGTCGCTGCATTGCATAAGGCCATAA < 41bp 0.606279696230669 0.905769590203391 0.21872309 0.2196266 prediction 0.598979787945444 Functional Gain - ANXA1 ENSG00000135046 CDS Human protein_coding chr9:75773690 chr9:75773694 synonymous SNV . 0 25 hm5C_associated_SNPs_101980 0 0 1 0 2 ANXA1 chr9:75773611 3'AG 75773611 Downstream 84bp
chr9 75773694 75773694 1 + C A UCEC 75773690 + 75773670 75773710 41 CAATCCATCCTCGGATGTCGCTGCCTTGCATAAGGCCATAA CAATCCATCCTCGGATGTCGCTGCATTGCATAAGGCCATAA < 41bp 0.606279696230669 0.905769590203391 0.21872309 0.2196266 prediction 0.598979787945444 Functional Gain - ANXA1 ENSG00000135046 CDS Human protein_coding chr9:75773690 chr9:75773694 synonymous SNV . 0 25 hm5C_associated_SNPs_101980 0 0 1 0 2 ANXA1 chr9:75773719 5'GT 75773719 Upstream 26bp
chrX 153627725 153627725 1 + C G LUSC 153627724 + 153627704 153627744 41 TACCCAAAGTCTCGCTTCTGCCGAGGTGTCCCTGGTAAGTA TACCCAAAGTCTCGCTTCTGCGGAGGTGTCCCTGGTAAGTA < 41bp 0.501591310670557 0.801056265587328 0.5234053 0.86523557 prediction 0.598929909833542 Functional Gain - RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627724 chrX:153627725 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_101982 0 0 1 0 1 RPL10 chrX:153627737 5'GT 153627737 Upstream 13bp
chr2 181846838 181846838 1 + C A LUSC 181846834 + 181846814 181846854 41 CAGCAGTGGCAGTTCAGATGCGGACCAGCGAGACCCAGCCG CAGCAGTGGCAGTTCAGATGCGGAACAGCGAGACCCAGCCG < 41bp 0.59498718148241 0.894419026416049 0.5470147 0.81117344 prediction 0.598863689867278 Functional Gain - UBE2E3 ENSG00000170035 CDS Human protein_coding chr2:181846834 chr2:181846838 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_101983 0 0 0 0 1 UBE2E3 chr2:181846745 3'AG 181846745 Downstream 94bp
chr1 11718859 11718859 1 + C A rs150816569 11718855 + 11718835 11718875 41 CGTTCAGCTCCTGTCGTCCGCGCACGCGCCTCTGGGGACCT CGTTCAGCTCCTGTCGTCCGCGCAAGCGCCTCTGGGGACCT < 41bp 0.398803477824238 0.799430134976467 0.29174566 0.39033094 prediction 0.598860269952934 Functional Gain - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718855 chr1:11718859 nonsynonymous SNV 0.099 0 25 hm5C_associated_SNPs_101984 0 0 1 0 2 FBXO44 chr1:11718793 3'AG 11718793 Downstream 67bp
chr1 11718859 11718859 1 + C A rs150816569 11718855 + 11718835 11718875 41 CGTTCAGCTCCTGTCGTCCGCGCACGCGCCTCTGGGGACCT CGTTCAGCTCCTGTCGTCCGCGCAAGCGCCTCTGGGGACCT < 41bp 0.398803477824238 0.799430134976467 0.29174566 0.39033094 prediction 0.598860269952934 Functional Gain - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718855 chr1:11718859 nonsynonymous SNV 0.099 0 25 hm5C_associated_SNPs_101984 0 0 1 0 2 FBXO44 chr1:11718928 5'GT 11718928 Upstream 70bp
chr12 49950982 49950982 1 + T G rs11541357 49950979 + 49950959 49950999 41 CCCACAGAGAGCGGCCTGCTCACTGTTCCCCATGGGCCCAG CCCACAGAGAGCGGCCTGCTCACGGTTCCCCATGGGCCCAG < 41bp 0.595229296939064 0.894644916692423 0.15915555 0.6117414 prediction 0.598831239506718 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49950979 chr12:49950982 synonymous SNV . 0 24 hm5C_associated_SNPs_101985 0 0 0 0 2 KCNH3 chr12:49950966 3'AG 49950966 Downstream 17bp
chr12 49950982 49950982 1 + T G rs11541357 49950979 + 49950959 49950999 41 CCCACAGAGAGCGGCCTGCTCACTGTTCCCCATGGGCCCAG CCCACAGAGAGCGGCCTGCTCACGGTTCCCCATGGGCCCAG < 41bp 0.595229296939064 0.894644916692423 0.15915555 0.6117414 prediction 0.598831239506718 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49950979 chr12:49950982 synonymous SNV . 0 24 hm5C_associated_SNPs_101985 0 0 0 0 2 KCNH3 chr12:49951042 5'GT 49951042 Upstream 61bp
chr19 51650072 51650072 1 + C A LUAD 51650068 + 51650048 51650088 41 GGTCGGGGGAGCTGGAGCCACAGCCCTGGTCTTCCTCTCCT GGTCGGGGGAGCTGGAGCCACAGCACTGGTCTTCCTCTCCT < 41bp 0.598545907807186 0.897961214087335 0.41654995 0.5279839 prediction 0.598830612560298 Functional Gain - SIGLEC7 ENSG00000168995 CDS Human protein_coding chr19:51650068 chr19:51650072 synonymous SNV . 0 25 hm5C_associated_SNPs_101986 0 0 0 0 2 SIGLEC7 chr19:51650011 3'AG 51650011 Downstream 62bp
chr19 51650072 51650072 1 + C A LUAD 51650068 + 51650048 51650088 41 GGTCGGGGGAGCTGGAGCCACAGCCCTGGTCTTCCTCTCCT GGTCGGGGGAGCTGGAGCCACAGCACTGGTCTTCCTCTCCT < 41bp 0.598545907807186 0.897961214087335 0.41654995 0.5279839 prediction 0.598830612560298 Functional Gain - SIGLEC7 ENSG00000168995 CDS Human protein_coding chr19:51650068 chr19:51650072 synonymous SNV . 0 25 hm5C_associated_SNPs_101986 0 0 0 0 2 SIGLEC7 chr19:51650107 5'GT 51650107 Upstream 36bp
chr16 84230345 84230345 1 + T G LUAD 84230343 + 84230323 84230363 41 GCTGTGGGGAAGCCCTACCTCCTGGCCTTGAAGACCTACGA GCTGTGGGGAAGCCCTACCTCCGGGCCTTGAAGACCTACGA < 41bp 0.467217612991178 0.799382637302475 0.3316283 0.922358 prediction 0.598765274604951 Functional Gain - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84230343 chr16:84230345 nonsynonymous SNV 0.192 4 23 hm5C_associated_SNPs_101989 0 0 0 0 2 ADAD2 chr16:84230253 3'AG 84230253 Downstream 93bp
chr16 84230345 84230345 1 + T G LUAD 84230343 + 84230323 84230363 41 GCTGTGGGGAAGCCCTACCTCCTGGCCTTGAAGACCTACGA GCTGTGGGGAAGCCCTACCTCCGGGCCTTGAAGACCTACGA < 41bp 0.467217612991178 0.799382637302475 0.3316283 0.922358 prediction 0.598765274604951 Functional Gain - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84230343 chr16:84230345 nonsynonymous SNV 0.192 4 23 hm5C_associated_SNPs_101989 0 0 0 0 2 ADAD2 chr16:84230373 5'GT 84230373 Upstream 29bp
chr22 42293112 42293112 1 + T G rs145703964 42293109 + 42293089 42293129 41 ACTTCATTCTTTTGTGGACTCTGTGGGGGTTATGAGCCCCC ACTTCATTCTTTTGTGGACTCTGGGGGGGTTATGAGCCCCC < 41bp 0.420545299403652 0.799319048564235 0.12016702 0.41697472 prediction 0.598638097128469 Functional Gain - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42293109 chr22:42293112 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_101994 0 0 1 0 2 SREBF2 chr22:42293056 3'AG 42293056 Downstream 57bp
chr22 42293112 42293112 1 + T G rs145703964 42293109 + 42293089 42293129 41 ACTTCATTCTTTTGTGGACTCTGTGGGGGTTATGAGCCCCC ACTTCATTCTTTTGTGGACTCTGGGGGGGTTATGAGCCCCC < 41bp 0.420545299403652 0.799319048564235 0.12016702 0.41697472 prediction 0.598638097128469 Functional Gain - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42293109 chr22:42293112 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_101994 0 0 1 0 2 SREBF2 chr22:42293165 5'GT 42293165 Upstream 54bp
chr2 171687681 171687681 1 + T A SKCM 171687677 + 171687657 171687697 41 ATCCTGGTTGACTGCAGAGACACCTTGAAGTATGGGGTTCG ATCCTGGTTGACTGCAGAGACACCATGAAGTATGGGGTTCG < 41bp 0.469704342090804 0.799298156989154 0.04764062 0.11143941 prediction 0.598596313978309 Functional Gain - GAD1 ENSG00000128683 CDS Human protein_coding chr2:171687677 chr2:171687681 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_101997 0 0 1 0 1 GAD1 chr2:171687702 5'GT 171687702 Upstream 22bp
chr1 25617202 25617202 1 + T A COAD 25617198 + 25617178 25617218 41 GATGCTGTCTTGGGGAAGGTCAACTTGGCGCAGTTGGTGGT GATGCTGTCTTGGGGAAGGTCAACATGGCGCAGTTGGTGGT < 41bp 0.520632811072329 0.81989980191234 0.43028027 0.47509247 prediction 0.598533981680021 Functional Gain - RHD ENSG00000187010 CDS Human protein_coding chr1:25617198 chr1:25617202 nonsynonymous SNV 0.178 3 25 hm5C_associated_SNPs_102000 0 0 1 0 2 RHD chr1:25617132 3'AG 25617132 Downstream 71bp
chr1 25617202 25617202 1 + T A COAD 25617198 + 25617178 25617218 41 GATGCTGTCTTGGGGAAGGTCAACTTGGCGCAGTTGGTGGT GATGCTGTCTTGGGGAAGGTCAACATGGCGCAGTTGGTGGT < 41bp 0.520632811072329 0.81989980191234 0.43028027 0.47509247 prediction 0.598533981680021 Functional Gain - RHD ENSG00000187010 CDS Human protein_coding chr1:25617198 chr1:25617202 nonsynonymous SNV 0.178 3 25 hm5C_associated_SNPs_102000 0 0 1 0 2 RHD chr1:25617282 5'GT 25617282 Upstream 81bp
chr3 178947851 178947851 1 + T G ESCA 178947849 + 178947829 178947869 41 GCTGGATACTGTGTAGCTACCTTCATTTTGGGAATTGGAGA GCTGGATACTGTGTAGCTACCTGCATTTTGGGAATTGGAGA < 41bp 0.50485228881148 0.804073079889728 0.24335241 0.16604748 prediction 0.598441582156496 Functional Gain - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178947849 chr3:178947851 nonsynonymous SNV 0.907 4 23 hm5C_associated_SNPs_102003 0 0 1 0 2 PIK3CA chr3:178947792 3'AG 178947792 Downstream 60bp
chr3 178947851 178947851 1 + T G ESCA 178947849 + 178947829 178947869 41 GCTGGATACTGTGTAGCTACCTTCATTTTGGGAATTGGAGA GCTGGATACTGTGTAGCTACCTGCATTTTGGGAATTGGAGA < 41bp 0.50485228881148 0.804073079889728 0.24335241 0.16604748 prediction 0.598441582156496 Functional Gain - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178947849 chr3:178947851 nonsynonymous SNV 0.907 4 23 hm5C_associated_SNPs_102003 0 0 1 0 2 PIK3CA chr3:178947909 5'GT 178947909 Upstream 59bp
chr19 47823131 47823131 1 + C A UCEC 47823127 + 47823107 47823147 41 CCTGTGGATAAAACTTCTAACACGCTGCGTGTTCCAGACAT CCTGTGGATAAAACTTCTAACACGATGCGTGTTCCAGACAT < 41bp 0.588140283775371 0.887332821256856 0.038822383 0.07027945 prediction 0.59838507496297 Functional Gain - C5AR1 ENSG00000197405 CDS Human protein_coding chr19:47823127 chr19:47823131 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_102005 0 0 1 0 1 C5AR1 chr19:47823038 3'AG 47823038 Downstream 94bp
chr2 10059866 10059866 1 + T G SKCM 10059864 + 10059844 10059884 41 CGTGTTTCCATGGACACAGCCTTCAGGGAGTCCTGAAAGAG CGTGTTTCCATGGACACAGCCTGCAGGGAGTCCTGAAAGAG < 41bp 0.502972817121507 0.802163633865393 0.084695905 0.18020192 prediction 0.598381633487773 Functional Gain - TAF1B ENSG00000115750 CDS Human protein_coding chr2:10059864 chr2:10059866 synonymous SNV . 0 23 hm5C_associated_SNPs_102006 0 0 1 0 1 TAF1B chr2:10059949 5'GT 10059949 Upstream 84bp
chr3 127398836 127398836 1 + C G rs201126833 127398835 + 127398815 127398855 41 GTCTTCACTGCAGCTGTCCCCCGAGGCAGCCTATGATGTGC GTCTTCACTGCAGCTGTCCCCGGAGGCAGCCTATGATGTGC < 41bp 0.494152042799023 0.799128898584305 0.48344636 0.94314796 prediction 0.59825779716861 Functional Gain - ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127398835 chr3:127398836 synonymous SNV . 0 22 hm5C_associated_SNPs_102008 0 0 0 0 1 ABTB1 chr3:127398828 3'AG 127398828 Downstream 9bp
chr19 35173717 35173717 1 + T A BRCA 35173713 + 35173693 35173733 41 TGATGTGGCTATAGACTTCTCTCATGAAGAGTGGGCATGCC TGATGTGGCTATAGACTTCTCTCAAGAAGAGTGGGCATGCC < 41bp 0.482740890847315 0.79907397597708 0.03184536 0.11398855 prediction 0.59814795195416 Functional Gain - ZNF302 ENSG00000089335 CDS Human protein_coding chr19:35173713 chr19:35173717 nonsynonymous SNV 0.989 0 25 hm5C_associated_SNPs_102013 0 0 0 0 2 ZNF302 chr19:35173682 3'AG 35173682 Downstream 36bp
chr19 35173717 35173717 1 + T A BRCA 35173713 + 35173693 35173733 41 TGATGTGGCTATAGACTTCTCTCATGAAGAGTGGGCATGCC TGATGTGGCTATAGACTTCTCTCAAGAAGAGTGGGCATGCC < 41bp 0.482740890847315 0.79907397597708 0.03184536 0.11398855 prediction 0.59814795195416 Functional Gain - ZNF302 ENSG00000089335 CDS Human protein_coding chr19:35173713 chr19:35173717 nonsynonymous SNV 0.989 0 25 hm5C_associated_SNPs_102013 0 0 0 0 2 ZNF302 chr19:35173802 5'GT 35173802 Upstream 86bp
chr2 103324646 103324646 1 + C A LUAD 103324642 + 103324622 103324662 41 CTCAATTTGCAGCCCAGAGCCAGGCGCTTCTTGCCAGAACA CTCAATTTGCAGCCCAGAGCCAGGAGCTTCTTGCCAGAACA < 41bp 0.586953391752243 0.886012992202214 0.84147644 0.9034296 prediction 0.598119200899942 Functional Gain - SLC9A2 ENSG00000115616 CDS Human protein_coding chr2:103324642 chr2:103324646 nonsynonymous SNV 0.946 0 25 hm5C_associated_SNPs_102014 0 0 0 0 1 SLC9A2 chr2:103324578 3'AG 103324578 Downstream 69bp
chr17 59479274 59479274 1 + C A UCEC 59479270 + 59479250 59479290 41 GCTAAGCCTGTGGCCTTCCACAAGCTGAAGCTGACCAACAA GCTAAGCCTGTGGCCTTCCACAAGATGAAGCTGACCAACAA < 41bp 0.600516290852264 0.899573615845433 0.8097149 0.86544585 prediction 0.598114649986338 Functional Gain - TBX2 ENSG00000121068 CDS Human protein_coding chr17:59479270 chr17:59479274 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_102015 0 0 0 0 1 TBX2 chr17:59479312 5'GT 59479312 Upstream 39bp
chr13 53608558 53608558 1 + T A HNSC 53608554 + 53608534 53608574 41 TCTGTTTCCCTGCCAGACACCACCTTTCCCGTGGACAGAGT TCTGTTTCCCTGCCAGACACCACCATTCCCGTGGACAGAGT < 41bp 0.535596459006697 0.834618404303453 0.020253152 0.029988497 prediction 0.598043890593513 Functional Gain - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53608554 chr13:53608558 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_102017 0 0 0 0 2 OLFM4 chr13:53608483 3'AG 53608483 Downstream 76bp
chr13 53608558 53608558 1 + T A HNSC 53608554 + 53608534 53608574 41 TCTGTTTCCCTGCCAGACACCACCTTTCCCGTGGACAGAGT TCTGTTTCCCTGCCAGACACCACCATTCCCGTGGACAGAGT < 41bp 0.535596459006697 0.834618404303453 0.020253152 0.029988497 prediction 0.598043890593513 Functional Gain - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53608554 chr13:53608558 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_102017 0 0 0 0 2 OLFM4 chr13:53608635 5'GT 53608635 Upstream 78bp
chr7 128370057 128370057 1 + C A COAD 128370053 + 128370033 128370073 41 TGGGAAAGAGAGAACCCCTCCGGCCTGCAGCCCCTCTCACT TGGGAAAGAGAGAACCCCTCCGGCATGCAGCCCCTCTCACT < 41bp 0.602438552974332 0.901439677026521 0.7929911 0.8080658 prediction 0.598002248104378 Functional Gain - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128370053 chr7:128370057 nonsynonymous SNV 0.308 0 25 hm5C_associated_SNPs_102019 0 0 0 0 1 FAM71F1 chr7:128370123 5'GT 128370123 Upstream 67bp
chr2 108910141 108910141 1 + C A LUAD 108910137 + 108910117 108910157 41 AGACACTATGGCCCTGACCTCAGACCTGGGGAAACAGATAA AGACACTATGGCCCTGACCTCAGAACTGGGGAAACAGATAA < 41bp 0.429040790782667 0.798973112369724 0.5481333 0.4413544 prediction 0.597946224739447 Functional Gain - SULT1C2 ENSG00000198203 CDS Human protein_coding chr2:108910137 chr2:108910141 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_102021 0 0 0 0 1 SULT1C2 chr2:108910103 3'AG 108910103 Downstream 39bp
chr4 156839316 156839316 1 + T G COAD 156839314 + 156839294 156839334 41 TGCCTAGATAACCATGTGTGCATGGTGCACAGAATGCTGGG TGCCTAGATAACCATGTGTGCAGGGTGCACAGAATGCTGGG < 41bp 0.541572661004827 0.840542759834823 0.33968204 0.873384 prediction 0.597940197659993 Functional Gain - TDO2 ENSG00000151790 CDS Human protein_coding chr4:156839314 chr4:156839316 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_102022 0 0 0 0 2 TDO2 chr4:156839301 3'AG 156839301 Downstream 16bp
chr4 156839316 156839316 1 + T G COAD 156839314 + 156839294 156839334 41 TGCCTAGATAACCATGTGTGCATGGTGCACAGAATGCTGGG TGCCTAGATAACCATGTGTGCAGGGTGCACAGAATGCTGGG < 41bp 0.541572661004827 0.840542759834823 0.33968204 0.873384 prediction 0.597940197659993 Functional Gain - TDO2 ENSG00000151790 CDS Human protein_coding chr4:156839314 chr4:156839316 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_102022 0 0 0 0 2 TDO2 chr4:156839391 5'GT 156839391 Upstream 76bp
chr2 37459358 37459358 1 + T A STAD 37459354 + 37459334 37459374 41 TATGTACAAAATAAAGTCTACTGGTCCCATCACTGTGGCCG TATGTACAAAATAAAGTCTACTGGACCCATCACTGTGGCCG < 41bp 0.490362171974817 0.798926519926053 0.07233226 0.13053805 prediction 0.597853039852105 Functional Gain - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37459354 chr2:37459358 synonymous SNV . 0 25 hm5C_associated_SNPs_102025 0 0 1 1 1 NDUFAF7 chr2:37459409 5'GT 37459409 Upstream 52bp
chr10 99359524 99359524 1 + C A THCA 99359520 + 99359500 99359540 41 CTGCCTGTGGATGCAGTGGTCACGCTTTCCCAGCACCCGAA CTGCCTGTGGATGCAGTGGTCACGATTTCCCAGCACCCGAA < 41bp 0.589438746925898 0.88830208331276 0.45369354 0.35436422 prediction 0.597726672773723 Functional Gain - HOGA1 ENSG00000241935 CDS Human protein_coding chr10:99359520 chr10:99359524 nonsynonymous SNV 0.265 5 25 hm5C_associated_SNPs_102028 0 0 0 0 2 HOGA1 chr10:99359437 3'AG 99359437 Downstream 88bp
chr10 99359524 99359524 1 + C A THCA 99359520 + 99359500 99359540 41 CTGCCTGTGGATGCAGTGGTCACGCTTTCCCAGCACCCGAA CTGCCTGTGGATGCAGTGGTCACGATTTCCCAGCACCCGAA < 41bp 0.589438746925898 0.88830208331276 0.45369354 0.35436422 prediction 0.597726672773723 Functional Gain - HOGA1 ENSG00000241935 CDS Human protein_coding chr10:99359520 chr10:99359524 nonsynonymous SNV 0.265 5 25 hm5C_associated_SNPs_102028 0 0 0 0 2 HOGA1 chr10:99359571 5'GT 99359571 Upstream 48bp
chr12 6639115 6639115 1 + T G rs61731147 6639113 + 6639093 6639133 41 AGCTGCGACGTGGGGCCAAGCCTGAGGGCAAGGTGAGCAGC AGCTGCGACGTGGGGCCAAGCCGGAGGGCAAGGTGAGCAGC < 41bp 0.472440262174463 0.798727461728417 0.41396227 0.89215386 prediction 0.597454923456834 Functional Gain - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6639113 chr12:6639115 synonymous SNV . 0 23 hm5C_associated_SNPs_102031 0 0 1 0 1 NCAPD2 chr12:6639124 5'GT 6639124 Upstream 10bp
chr19 49842111 49842111 1 + T A UCEC 49842107 + 49842087 49842127 41 TAGATAAGGTGATCTTGCCCCAGCTCAGCAGGCTTGGACAC TAGATAAGGTGATCTTGCCCCAGCACAGCAGGCTTGGACAC < 41bp 0.516655037959315 0.815349311721661 0.18979362 0.23981276 prediction 0.597388547524692 Functional Gain - CD37 ENSG00000104894 CDS Human protein_coding chr19:49842107 chr19:49842111 nonsynonymous SNV 0.046 1 25 hm5C_associated_SNPs_102032 0 0 1 1 1 CD37 chr19:49842193 5'GT 49842193 Upstream 83bp
chr9 135374785 135374785 1 + C A COAD 135374781 + 135374761 135374801 41 ATCGGACGCTGGAACGTGTTCAAGCAGCAGCCCACCTGCCC ATCGGACGCTGGAACGTGTTCAAGAAGCAGCCCACCTGCCC < 41bp 0.599307427909373 0.897991336102724 0.49217755 0.8586691 prediction 0.597367816386702 Functional Gain - CFAP77 ENSG00000188523 CDS Human protein_coding chr9:135374781 chr9:135374785 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_102034 0 0 0 0 1 CFAP77 chr9:135374759 3'AG 135374759 Downstream 27bp
chr20 9510367 9510367 1 + T A OV 9510363 + 9510343 9510383 41 TTTTGGGGCTCATCTTGGGCCTCGTCATCATGGTAACACTC TTTTGGGGCTCATCTTGGGCCTCGACATCATGGTAACACTC < 41bp 0.487812288856804 0.798673212494445 0.011319101 0.0730623 prediction 0.59734642498889 Functional Gain - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9510363 chr20:9510367 nonsynonymous SNV 0.506 3 25 hm5C_associated_SNPs_102035 0 0 0 0 1 LAMP5 chr20:9510289 3'AG 9510289 Downstream 79bp
chrX 55117036 55117036 1 + T A UCEC 55117032 + 55117012 55117052 41 GATTGAAAATCAAGCAGTGCCTGCTTTTCAAGGTGAAGGGA GATTGAAAATCAAGCAGTGCCTGCATTTCAAGGTGAAGGGA < 41bp 0.505932960576516 0.8044584678583 0.010766268 0.03423041 prediction 0.597051014563569 Functional Gain - PAGE2 ENSG00000234068 CDS Human protein_coding chrX:55117032 chrX:55117036 synonymous SNV . 0 25 hm5C_associated_SNPs_102041 0 0 0 0 1 PAGE2 chrX:55117043 5'GT 55117043 Upstream 8bp
chr11 809955 809955 1 + C A rs182816891 809951 + 809931 809971 41 GTAGCGGTTTAACCCCGCCTCTTGCGTCGGCGCCTTCCTTT GTAGCGGTTTAACCCCGCCTCTTGAGTCGGCGCCTTCCTTT < 41bp 0.562191439668122 0.860662874699816 0.048511088 0.058230907 prediction 0.596942870063387 Functional Gain - RPLP2 ENSG00000177600 UTR5 Human protein_coding chr11:809951 chr11:809955 . . 0 25 hm5C_associated_SNPs_102048 0 0 1 0 1 RPLP2 chr11:810039 5'GT 810039 Upstream 85bp
chr20 61299190 61299190 1 + C A LUAD 61299186 + 61299166 61299206 41 CTACAGCCCTGTGTGCGGCTCGGACGGCCTCATGTACTTCT CTACAGCCCTGTGTGCGGCTCGGAAGGCCTCATGTACTTCT < 41bp 0.406571740956262 0.798450875046761 0.37755045 0.45366722 prediction 0.596901750093522 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61299186 chr20:61299190 nonsynonymous SNV 0.003 1 25 hm5C_associated_SNPs_102049 0 0 1 0 1 SLCO4A1 chr20:61299262 5'GT 61299262 Upstream 73bp
chr16 335112 335112 1 + T G CESC 335109 + 335089 335129 41 TGAGGGGCGGGCAGACTTCCCCGTGGACGAGGAGCTTGGCC TGAGGGGCGGGCAGACTTCCCCGGGGACGAGGAGCTTGGCC < 41bp 0.401315052114243 0.798401922490697 0.83368814 0.93357986 prediction 0.596803844981393 Functional Gain - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:335109 chr16:335112 nonsynonymous SNV 0.891 0 24 hm5C_associated_SNPs_102051 0 0 1 0 2 PDIA2 chr16:335084 3'AG 335084 Downstream 29bp
chr16 335112 335112 1 + T G CESC 335109 + 335089 335129 41 TGAGGGGCGGGCAGACTTCCCCGTGGACGAGGAGCTTGGCC TGAGGGGCGGGCAGACTTCCCCGGGGACGAGGAGCTTGGCC < 41bp 0.401315052114243 0.798401922490697 0.83368814 0.93357986 prediction 0.596803844981393 Functional Gain - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:335109 chr16:335112 nonsynonymous SNV 0.891 0 24 hm5C_associated_SNPs_102051 0 0 1 0 2 PDIA2 chr16:335200 5'GT 335200 Upstream 89bp
chr17 37791876 37791876 1 + C A PRAD 37791872 + 37791852 37791892 41 ATCCCCAGCTGGGCAAAAGACAACCTGTGGCCAGGGTCTGG ATCCCCAGCTGGGCAAAAGACAACATGTGGCCAGGGTCTGG < 41bp 0.396119730444166 0.798396768664667 0.13863376 0.10303873 prediction 0.596793537329334 Functional Gain - PPP1R1B ENSG00000131771 CDS Human protein_coding chr17:37791872 chr17:37791876 synonymous SNV . 0 25 hm5C_associated_SNPs_102052 0 0 0 0 1 PPP1R1B chr17:37791860 3'AG 37791860 Downstream 17bp
chr4 159136374 159136374 1 + C A LIHC 159136370 + 159136350 159136390 41 TCTCCAGTGGGTTCTTTGTGCTGCCATATGGTTGGTTGCCT TCTCCAGTGGGTTCTTTGTGCTGCAATATGGTTGGTTGCCT < 41bp 0.401182496112913 0.798388058478028 0.073691726 0.14536676 prediction 0.596776116956056 Functional Gain - TMEM144 ENSG00000164124 CDS Human protein_coding chr4:159136370 chr4:159136374 synonymous SNV . 0 25 hm5C_associated_SNPs_102054 0 0 1 0 2 TMEM144 chr4:159136343 3'AG 159136343 Downstream 32bp
chr4 159136374 159136374 1 + C A LIHC 159136370 + 159136350 159136390 41 TCTCCAGTGGGTTCTTTGTGCTGCCATATGGTTGGTTGCCT TCTCCAGTGGGTTCTTTGTGCTGCAATATGGTTGGTTGCCT < 41bp 0.401182496112913 0.798388058478028 0.073691726 0.14536676 prediction 0.596776116956056 Functional Gain - TMEM144 ENSG00000164124 CDS Human protein_coding chr4:159136370 chr4:159136374 synonymous SNV . 0 25 hm5C_associated_SNPs_102054 0 0 1 0 2 TMEM144 chr4:159136465 5'GT 159136465 Upstream 92bp
chr11 71671877 71671877 1 + C A UCEC 71671873 + 71671853 71671893 41 AATGGTCCTCATCCTCATCGCAACCTTGGTGGTGGCCCAGC AATGGTCCTCATCCTCATCGCAACATTGGTGGTGGCCCAGC < 41bp 0.528638177645187 0.826954144634223 0.055705905 0.103746444 prediction 0.596631933978071 Functional Gain - RNF121 ENSG00000137522 CDS Human protein_coding chr11:71671873 chr11:71671877 synonymous SNV . 0 25 hm5C_associated_SNPs_102056 0 0 1 0 1 RNF121 chr11:71671937 5'GT 71671937 Upstream 61bp
chr20 2616614 2616614 1 + C G LUSC 2616613 + 2616593 2616633 41 CTCAGTTTCCAAAAGCCTTTCCCGAGCTAATGCCCAGCTGA CTCAGTTTCCAAAAGCCTTTCGCGAGCTAATGCCCAGCTGA < 41bp 0.504565832220442 0.802833261408801 0.31353733 0.39315683 prediction 0.596534858376717 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2616613 chr20:2616614 synonymous SNV . 0 22 hm5C_associated_SNPs_102059 0 0 0 0 2 TMC2 chr20:2616572 3'AG 2616572 Downstream 43bp
chr20 2616614 2616614 1 + C G LUSC 2616613 + 2616593 2616633 41 CTCAGTTTCCAAAAGCCTTTCCCGAGCTAATGCCCAGCTGA CTCAGTTTCCAAAAGCCTTTCGCGAGCTAATGCCCAGCTGA < 41bp 0.504565832220442 0.802833261408801 0.31353733 0.39315683 prediction 0.596534858376717 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2616613 chr20:2616614 synonymous SNV . 0 22 hm5C_associated_SNPs_102059 0 0 0 0 2 TMC2 chr20:2616650 5'GT 2616650 Upstream 37bp
chr7 97833423 97833423 1 + C A THCA 97833419 + 97833399 97833439 41 TGGCCGCACTCGGCGCCTTACTCCCGGTTCTCCATCTCTCC TGGCCGCACTCGGCGCCTTACTCCAGGTTCTCCATCTCTCC < 41bp 0.372636794190051 0.798201052197137 0.48338252 0.95862824 prediction 0.596402104394275 Functional Gain - LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97833419 chr7:97833423 synonymous SNV . 0 25 hm5C_associated_SNPs_102061 0 0 1 0 1 LMTK2 chr7:97833498 5'GT 97833498 Upstream 76bp
chr11 67076937 67076937 1 + T G BLCA 67076934 + 67076914 67076954 41 CCTGAGCGCTTCACCTACCACAATGTGCGCCTCTGGGATGA CCTGAGCGCTTCACCTACCACAAGGTGCGCCTCTGGGATGA < 41bp 0.404205957019281 0.798182136514318 0.23593661 0.89784527 prediction 0.596364273028636 Functional Gain - SSH3 ENSG00000172830 CDS Human protein_coding chr11:67076934 chr11:67076937 nonsynonymous SNV 0.986 3 24 hm5C_associated_SNPs_102063 0 0 1 0 1 SSH3 chr11:67077014 5'GT 67077014 Upstream 78bp
chr9 71650766 71650766 1 + C A rs572324212 71650762 + 71650742 71650782 41 CACCCAGCCCAGCCCAGGCCCAGACCCTCACCCGGGTCCCG CACCCAGCCCAGCCCAGGCCCAGAACCTCACCCGGGTCCCG < 41bp 0.444366232201738 0.798159529143294 0.5300782 0.55934364 prediction 0.596319058286588 Functional Gain - FXN ENSG00000165060 CDS Human protein_coding chr9:71650762 chr9:71650766 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_102065 0 0 1 0 1 FXN chr9:71650863 5'GT 71650863 Upstream 98bp
chr11 60890401 60890401 1 + C A UCEC 60890397 + 60890377 60890417 41 AGGCCAGGATCCAAACCCCGCAGGCCTGGCCGCAGGCACGG AGGCCAGGATCCAAACCCCGCAGGACTGGCCGCAGGCACGG < 41bp 0.592813106603808 0.890914689521616 0.3893209 0.44605613 prediction 0.596203165835616 Functional Gain - CD5 ENSG00000110448 CDS Human protein_coding chr11:60890397 chr11:60890401 synonymous SNV . 0 25 hm5C_associated_SNPs_102068 0 0 0 0 1 CD5 chr11:60890379 3'AG 60890379 Downstream 23bp
chr20 19673941 19673941 1 + C A LAML 19673937 + 19673917 19673957 41 ACAGTGAAATGGGCGTTCACCTGGCCGCTGAGTTTCGTCTT ACAGTGAAATGGGCGTTCACCTGGACGCTGAGTTTCGTCTT < 41bp 0.42403994424993 0.798069640320103 0.7627154 0.5737443 prediction 0.596139280640206 Functional Gain - SLC24A3 ENSG00000185052 CDS Human protein_coding chr20:19673937 chr20:19673941 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_102070 0 0 0 0 1 SLC24A3 chr20:19673903 3'AG 19673903 Downstream 39bp
chr9 35801946 35801946 1 + C A BLCA 35801942 + 35801922 35801962 41 GCGGGGATCCAGTTACGGCTCGCTCATGACAGCCCATGGGA GCGGGGATCCAGTTACGGCTCGCTAATGACAGCCCATGGGA < 41bp 0.38485115438989 0.798038871122917 0.015542537 0.040171653 prediction 0.596077742245833 Functional Gain - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35801942 chr9:35801946 synonymous SNV . 0 25 hm5C_associated_SNPs_102072 0 0 0 0 2 NPR2 chr9:35801923 3'AG 35801923 Downstream 24bp
chr9 35801946 35801946 1 + C A BLCA 35801942 + 35801922 35801962 41 GCGGGGATCCAGTTACGGCTCGCTCATGACAGCCCATGGGA GCGGGGATCCAGTTACGGCTCGCTAATGACAGCCCATGGGA < 41bp 0.38485115438989 0.798038871122917 0.015542537 0.040171653 prediction 0.596077742245833 Functional Gain - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35801942 chr9:35801946 synonymous SNV . 0 25 hm5C_associated_SNPs_102072 0 0 0 0 2 NPR2 chr9:35801997 5'GT 35801997 Upstream 52bp
chr9 131469190 131469190 1 + C A rs56251280 131469186 + 131469166 131469206 41 TTCCCACAGGGCCTGAGCTGCTGGCGGAGGAGCTACAGCAT TTCCCACAGGGCCTGAGCTGCTGGAGGAGGAGCTACAGCAT < 41bp 0.600823060289554 0.898811614368035 0.5987343 0.7133051 prediction 0.595977108156961 Functional Gain - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131469186 chr9:131469190 nonsynonymous SNV 0.766 1 25 hm5C_associated_SNPs_102075 0 0 1 0 1 PKN3 chr9:131469175 3'AG 131469175 Downstream 16bp
chr17 74465363 74465363 1 + T A LIHC 74465359 + 74465339 74465379 41 GCTGGTTCGAGGAGGGCTGCCTTGTGGCCTTCATCATCGGC GCTGGTTCGAGGAGGGCTGCCTTGAGGCCTTCATCATCGGC < 41bp 0.514254311118969 0.812224556835144 0.048776656 0.09633112 prediction 0.59594049143235 Functional Gain - AANAT ENSG00000129673 CDS Human protein_coding chr17:74465359 chr17:74465363 nonsynonymous SNV 0.810 4 25 hm5C_associated_SNPs_102076 0 0 0 1 1 AANAT chr17:74465409 5'GT 74465409 Upstream 47bp
chr19 15760910 15760910 1 + C G UCEC 15760909 + 15760889 15760929 41 CAGGAGCGGCGCCGCACCCTCCCTAGCCAGGGTGTTGATGA CAGGAGCGGCGCCGCACCCTCGCTAGCCAGGGTGTTGATGA < 41bp 0.49744396204093 0.797938084956129 0.0278517 0.056494236 prediction 0.595876169912257 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15760909 chr19:15760910 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_102079 0 0 1 0 1 CYP4F3 chr19:15760993 5'GT 15760993 Upstream 84bp
chr13 113814337 113814337 1 + C A THCA 113814333 + 113814313 113814353 41 TTGTCTCGTCTGTAGTATTTCTCCCGGCCTCCAAAGCAAAC TTGTCTCGTCTGTAGTATTTCTCCAGGCCTCCAAAGCAAAC < 41bp 0.385370856079059 0.797924668377935 0.020022005 0.9116689 prediction 0.595849336755871 Functional Gain - PROZ ENSG00000126231 CDS Human protein_coding chr13:113814333 chr13:113814337 nonsynonymous SNV 0.003 1 25 hm5C_associated_SNPs_102080 0 0 0 0 1 PROZ chr13:113814328 3'AG 113814328 Downstream 10bp
chr12 109539760 109539760 1 + C A rs376918741 109539756 + 109539736 109539776 41 ATATCATGGACCTAATCAAGCTCACGGGCTCTGCTTTAGTG ATATCATGGACCTAATCAAGCTCAAGGGCTCTGCTTTAGTG < 41bp 0.378350015100461 0.797871634671965 0.022465885 0.040062547 prediction 0.595743269343929 Functional Gain - UNG ENSG00000076248 CDS Human protein_coding chr12:109539756 chr12:109539760 nonsynonymous SNV 0.856 4 25 hm5C_associated_SNPs_102082 0 0 1 0 2 UNG chr12:109539707 3'AG 109539707 Downstream 54bp
chr12 109539760 109539760 1 + C A rs376918741 109539756 + 109539736 109539776 41 ATATCATGGACCTAATCAAGCTCACGGGCTCTGCTTTAGTG ATATCATGGACCTAATCAAGCTCAAGGGCTCTGCTTTAGTG < 41bp 0.378350015100461 0.797871634671965 0.022465885 0.040062547 prediction 0.595743269343929 Functional Gain - UNG ENSG00000076248 CDS Human protein_coding chr12:109539756 chr12:109539760 nonsynonymous SNV 0.856 4 25 hm5C_associated_SNPs_102082 0 0 1 0 2 UNG chr12:109539804 5'GT 109539804 Upstream 45bp
chr17 7942824 7942824 1 + C A rs368311556 7942820 + 7942800 7942840 41 CTGGCCCCGGATGCCTGGTTCTGCCGCTGGTTCCAGCTGAC CTGGCCCCGGATGCCTGGTTCTGCAGCTGGTTCCAGCTGAC < 41bp 0.579947406813702 0.877705982193429 0.39045343 0.81806475 prediction 0.595517150759454 Functional Gain - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7942820 chr17:7942824 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_102090 0 0 0 0 1 ALOX15B chr17:7942923 5'GT 7942923 Upstream 100bp
chr5 31317972 31317972 1 + C A UCEC 31317968 + 31317948 31317988 41 GCCATGCGGAGGCGCTCATCCACCCCACGGGACTGAGCACG GCCATGCGGAGGCGCTCATCCACCACACGGGACTGAGCACG < 41bp 0.381613856655283 0.797717516017729 0.08189055 0.045057684 prediction 0.595435032035457 Functional Gain - CDH6 ENSG00000113361 CDS Human protein_coding chr5:31317968 chr5:31317972 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_102095 0 0 0 0 1 CDH6 chr5:31318031 5'GT 31318031 Upstream 60bp
chr4 5448455 5448455 1 + C A UCEC 5448451 + 5448431 5448471 41 AGGCCCCGGATACTCGTACCCTGTCGACTGGTGGTCCCTGG AGGCCCCGGATACTCGTACCCTGTAGACTGGTGGTCCCTGG < 41bp 0.413642350171066 0.797678840654036 0.17326936 0.15878797 prediction 0.595357681308072 Functional Gain - STK32B ENSG00000152953 CDS Human protein_coding chr4:5448451 chr4:5448455 synonymous SNV . 0 25 hm5C_associated_SNPs_102096 0 0 0 0 2 STK32B chr4:5448400 3'AG 5448400 Downstream 56bp
chr4 5448455 5448455 1 + C A UCEC 5448451 + 5448431 5448471 41 AGGCCCCGGATACTCGTACCCTGTCGACTGGTGGTCCCTGG AGGCCCCGGATACTCGTACCCTGTAGACTGGTGGTCCCTGG < 41bp 0.413642350171066 0.797678840654036 0.17326936 0.15878797 prediction 0.595357681308072 Functional Gain - STK32B ENSG00000152953 CDS Human protein_coding chr4:5448451 chr4:5448455 synonymous SNV . 0 25 hm5C_associated_SNPs_102096 0 0 0 0 2 STK32B chr4:5448503 5'GT 5448503 Upstream 49bp
chr11 22397537 22397537 1 + T G HNSC 22397535 + 22397515 22397555 41 TTTGCTTCTGAAGGTTTTGGCATGGAAGCCACACTGCTCCT TTTGCTTCTGAAGGTTTTGGCAGGGAAGCCACACTGCTCCT < 41bp 0.550190405678043 0.847768340417171 0.53136814 0.905339 prediction 0.595155869478255 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22397535 chr11:22397537 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_102100 0 0 0 0 1 SLC17A6 chr11:22397528 3'AG 22397528 Downstream 10bp
chr1 171227273 171227273 1 + C A LUAD 171227269 + 171227249 171227289 41 TGGGAGCTGGGGTCAGCGGCCTGGCCTCCATCAAGTGCTGT TGGGAGCTGGGGTCAGCGGCCTGGACTCCATCAAGTGCTGT < 41bp 0.59852329816109 0.896093067245175 0.2452564 0.17935336 prediction 0.595139538168171 Functional Gain - FMO1 ENSG00000010932 CDS Human protein_coding chr1:171227269 chr1:171227273 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_102101 0 0 0 0 2 FMO1 chr1:171227221 3'AG 171227221 Downstream 53bp
chr1 171227273 171227273 1 + C A LUAD 171227269 + 171227249 171227289 41 TGGGAGCTGGGGTCAGCGGCCTGGCCTCCATCAAGTGCTGT TGGGAGCTGGGGTCAGCGGCCTGGACTCCATCAAGTGCTGT < 41bp 0.59852329816109 0.896093067245175 0.2452564 0.17935336 prediction 0.595139538168171 Functional Gain - FMO1 ENSG00000010932 CDS Human protein_coding chr1:171227269 chr1:171227273 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_102101 0 0 0 0 2 FMO1 chr1:171227358 5'GT 171227358 Upstream 86bp
chr16 31234185 31234185 1 + C A LUAD 31234181 + 31234161 31234201 41 CTGGCAGAGTCTCCCCCACCCGCCCGTCTGGACATCCAGCT CTGGCAGAGTCTCCCCCACCCGCCAGTCTGGACATCCAGCT < 41bp 0.379676539439162 0.797531536955391 0.08157393 0.32243282 prediction 0.595063073910782 Functional Gain - TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31234181 chr16:31234185 nonsynonymous SNV 0.229 1 25 hm5C_associated_SNPs_102102 0 0 1 0 2 TRIM72 chr16:31234148 3'AG 31234148 Downstream 38bp
chr16 31234185 31234185 1 + C A LUAD 31234181 + 31234161 31234201 41 CTGGCAGAGTCTCCCCCACCCGCCCGTCTGGACATCCAGCT CTGGCAGAGTCTCCCCCACCCGCCAGTCTGGACATCCAGCT < 41bp 0.379676539439162 0.797531536955391 0.08157393 0.32243282 prediction 0.595063073910782 Functional Gain - TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31234181 chr16:31234185 nonsynonymous SNV 0.229 1 25 hm5C_associated_SNPs_102102 0 0 1 0 2 TRIM72 chr16:31234266 5'GT 31234266 Upstream 82bp
chr11 66254137 66254137 1 + C A rs112484606 66254133 + 66254113 66254153 41 GAGCCAAGGCTTCGACACCTCGGACTGGGGAAGGAGGTGAG GAGCCAAGGCTTCGACACCTCGGAATGGGGAAGGAGGTGAG < 41bp 0.603471541134891 0.900989213410842 0.30315328 0.4997317 prediction 0.5950353445519 Functional Gain - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66254133 chr11:66254137 nonsynonymous SNV 0.965 4 25 hm5C_associated_SNPs_102104 0 0 0 0 1 DPP3 chr11:66254148 5'GT 66254148 Upstream 12bp
chr16 28909683 28909683 1 + C A UCEC 28909679 + 28909659 28909699 41 GAGTGGGGCACTGGCCGGGACACCCTGCGCTGCTTGGCCCT GAGTGGGGCACTGGCCGGGACACCATGCGCTGCTTGGCCCT < 41bp 0.370222008458166 0.797487981930828 0.015479267 0.04347396 prediction 0.594975963861656 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28909679 chr16:28909683 nonsynonymous SNV 0.979 5 25 hm5C_associated_SNPs_102109 0 0 1 0 1 ATP2A1 chr16:28909772 5'GT 28909772 Upstream 90bp
chr16 30939906 30939906 1 + C A COAD 30939902 + 30939882 30939922 41 CCAGGGTTCTGAATCCGAGCCAGGCTTTCTCATCCTGCCAC CCAGGGTTCTGAATCCGAGCCAGGATTTCTCATCCTGCCAC < 41bp 0.595809746461545 0.893293599538106 0.36827368 0.6144875 prediction 0.594967706153122 Functional Gain - FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30939902 chr16:30939906 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_102110 0 0 1 0 2 FBXL19 chr16:30939949 5'GT 30939949 Upstream 44bp
chr16 30939906 30939906 1 + C A COAD 30939902 + 30939882 30939922 41 CCAGGGTTCTGAATCCGAGCCAGGCTTTCTCATCCTGCCAC CCAGGGTTCTGAATCCGAGCCAGGATTTCTCATCCTGCCAC < 41bp 0.595809746461545 0.893293599538106 0.36827368 0.6144875 prediction 0.594967706153122 Functional Gain - FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30939902 chr16:30939906 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_102110 0 0 1 0 2 FBXL19 chr16:30939951 5'GT 30939951 Upstream 46bp
chr17 66040510 66040510 1 + T A HNSC 66040506 + 66040486 66040526 41 CCAGTGGTGGAACAGTTGAACAGATTGTGTACCTTGTTCAC CCAGTGGTGGAACAGTTGAACAGAATGTGTACCTTGTTCAC < 41bp 0.498743685587141 0.797480976893209 0.60298383 0.83421755 prediction 0.594961953786418 Functional Gain - KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66040506 chr17:66040510 nonsynonymous SNV 0.745 3 25 hm5C_associated_SNPs_102111 0 0 1 0 1 KPNA2 chr17:66040437 3'AG 66040437 Downstream 74bp
chr22 50315316 50315316 1 + C A HNSC 50315312 + 50315292 50315332 41 AGCAGACAGGGCGACGGGTCCTGCCGGTGCCACATGGGGTA AGCAGACAGGGCGACGGGTCCTGCAGGTGCCACATGGGGTA < 41bp 0.60859740624211 0.906041458701645 0.41064698 0.656559 prediction 0.594888104919071 Functional Gain - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50315312 chr22:50315316 synonymous SNV . 0 25 hm5C_associated_SNPs_102113 0 0 1 0 2 CRELD2 chr22:50315233 3'AG 50315233 Downstream 84bp
chr22 50315316 50315316 1 + C A HNSC 50315312 + 50315292 50315332 41 AGCAGACAGGGCGACGGGTCCTGCCGGTGCCACATGGGGTA AGCAGACAGGGCGACGGGTCCTGCAGGTGCCACATGGGGTA < 41bp 0.60859740624211 0.906041458701645 0.41064698 0.656559 prediction 0.594888104919071 Functional Gain - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50315312 chr22:50315316 synonymous SNV . 0 25 hm5C_associated_SNPs_102113 0 0 1 0 2 CRELD2 chr22:50315409 5'GT 50315409 Upstream 94bp
chr1 15770006 15770006 1 + C G LUAD 15770005 + 15769985 15770025 41 CAGAGAAGGACTCCCTGCTCCCCAAGGACTACCCCTGCTAT CAGAGAAGGACTCCCTGCTCCGCAAGGACTACCCCTGCTAT < 41bp 0.49976716950412 0.797426967147599 0.22665587 0.24694756 prediction 0.594853934295198 Functional Gain - CTRC ENSG00000162438 CDS Human protein_coding chr1:15770005 chr1:15770006 nonsynonymous SNV 0.628 3 22 hm5C_associated_SNPs_102116 0 0 0 0 2 CTRC chr1:15769914 3'AG 15769914 Downstream 93bp
chr1 15770006 15770006 1 + C G LUAD 15770005 + 15769985 15770025 41 CAGAGAAGGACTCCCTGCTCCCCAAGGACTACCCCTGCTAT CAGAGAAGGACTCCCTGCTCCGCAAGGACTACCCCTGCTAT < 41bp 0.49976716950412 0.797426967147599 0.22665587 0.24694756 prediction 0.594853934295198 Functional Gain - CTRC ENSG00000162438 CDS Human protein_coding chr1:15770005 chr1:15770006 nonsynonymous SNV 0.628 3 22 hm5C_associated_SNPs_102116 0 0 0 0 2 CTRC chr1:15770050 5'GT 15770050 Upstream 45bp
chr6 161528964 161528964 1 + T G LGG 161528962 + 161528942 161528982 41 TATGGGAAGGTGTACACCTGCATCAGCGTCGACACCGGGGA TATGGGAAGGTGTACACCTGCAGCAGCGTCGACACCGGGGA < 41bp 0.471493446016656 0.797414883728928 0.3974377 0.6090969 prediction 0.594829767457857 Functional Gain - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161528962 chr6:161528964 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_102117 0 0 1 0 2 MAP3K4 chr6:161528931 3'AG 161528931 Downstream 34bp
chr6 161528964 161528964 1 + T G LGG 161528962 + 161528942 161528982 41 TATGGGAAGGTGTACACCTGCATCAGCGTCGACACCGGGGA TATGGGAAGGTGTACACCTGCAGCAGCGTCGACACCGGGGA < 41bp 0.471493446016656 0.797414883728928 0.3974377 0.6090969 prediction 0.594829767457857 Functional Gain - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161528962 chr6:161528964 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_102117 0 0 1 0 2 MAP3K4 chr6:161529001 5'GT 161529001 Upstream 38bp
chr7 27138754 27138754 1 + T G rs706018 27138751 + 27138731 27138771 41 AGGAGCTGCGCAGCCCTGGCCGCTGCCGGGACGCCCTGCTC AGGAGCTGCGCAGCCCTGGCCGCGGCCGGGACGCCCTGCTC < 41bp 0.583295540737457 0.880676879525715 0.24092096 0.8790059 prediction 0.594762677576517 Functional Gain - HOTAIRM1 ENSG00000233429 ncRNA_exonic Human antisense chr7:27138751 chr7:27138754 . . 0 24 hm5C_associated_SNPs_102119 0 0 1 0 1 HOTAIRM1 chr7:27138717 3'AG 27138717 Downstream 38bp
chr17 37213333 37213333 1 + C A COAD 37213329 + 37213309 37213349 41 AAGGGAGGCTGGCGGATCTGCTACCTTTTGCGGTTCCCACC AAGGGAGGCTGGCGGATCTGCTACATTTTGCGGTTCCCACC < 41bp 0.408135437623884 0.797347295640492 0.41041222 0.2472265 prediction 0.594694591280984 Functional Gain - LOC100131347 ENSG00000263818 ncRNA_exonic Human transcribed_processed_pseudogene chr17:37213329 chr17:37213333 . . 0 25 hm5C_associated_SNPs_102121 0 0 0 0 1 LOC100131347 chr17:37213412 5'GT 37213412 Upstream 80bp
chr1 33547062 33547062 1 + C A rs547813967 33547058 + 33547038 33547078 41 GTTTCGAGGTCACCGGCGACCCCCCCTAGCAGCGCGCCTGG GTTTCGAGGTCACCGGCGACCCCCACTAGCAGCGCGCCTGG < 41bp 0.457444543158596 0.797316850970256 0.05459103 0.0909341 prediction 0.594633701940512 Functional Gain - AZIN2 ENSG00000142920 UTR5 Human protein_coding chr1:33547058 chr1:33547062 . . 0 25 hm5C_associated_SNPs_102123 0 0 0 0 3 AZIN2 chr1:33546989 3'AG 33546989 Downstream 74bp
chr1 33547062 33547062 1 + C A rs547813967 33547058 + 33547038 33547078 41 GTTTCGAGGTCACCGGCGACCCCCCCTAGCAGCGCGCCTGG GTTTCGAGGTCACCGGCGACCCCCACTAGCAGCGCGCCTGG < 41bp 0.457444543158596 0.797316850970256 0.05459103 0.0909341 prediction 0.594633701940512 Functional Gain - AZIN2 ENSG00000142920 UTR5 Human protein_coding chr1:33547058 chr1:33547062 . . 0 25 hm5C_associated_SNPs_102123 0 0 0 0 3 AZIN2 chr1:33546992 3'AG 33546992 Downstream 71bp
chr1 33547062 33547062 1 + C A rs547813967 33547058 + 33547038 33547078 41 GTTTCGAGGTCACCGGCGACCCCCCCTAGCAGCGCGCCTGG GTTTCGAGGTCACCGGCGACCCCCACTAGCAGCGCGCCTGG < 41bp 0.457444543158596 0.797316850970256 0.05459103 0.0909341 prediction 0.594633701940512 Functional Gain - AZIN2 ENSG00000142920 UTR5 Human protein_coding chr1:33547058 chr1:33547062 . . 0 25 hm5C_associated_SNPs_102123 0 0 0 0 3 AZIN2 chr1:33547109 5'GT 33547109 Upstream 48bp
chr12 57486351 57486351 1 + T A SKCM 57486347 + 57486327 57486367 41 CGAGAGAGCACCTACTTGTCCTCCTTGAAGGGCTCCAGGTG CGAGAGAGCACCTACTTGTCCTCCATGAAGGGCTCCAGGTG < 41bp 0.457822749149614 0.797297375911384 0.0067346096 0.9126866 prediction 0.594594751822767 Functional Gain - NAB2 ENSG00000166886 CDS Human protein_coding chr12:57486347 chr12:57486351 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_102125 0 0 1 0 1 NAB2 chr12:57486364 5'GT 57486364 Upstream 14bp
chr18 21057190 21057190 1 + C A LGG 21057186 + 21057166 21057206 41 GTCAGTAGAACCTACCCACCCTCACGGCCTGGAGTTCTTGT GTCAGTAGAACCTACCCACCCTCAAGGCCTGGAGTTCTTGT < 41bp 0.372467136538989 0.797263914740203 0.013073742 0.03120637 prediction 0.594527829480406 Functional Gain - RIOK3 ENSG00000101782 CDS Human protein_coding chr18:21057186 chr18:21057190 nonsynonymous SNV 0.989 1 25 hm5C_associated_SNPs_102130 0 0 1 0 2 RIOK3 chr18:21057143 3'AG 21057143 Downstream 48bp
chr18 21057190 21057190 1 + C A LGG 21057186 + 21057166 21057206 41 GTCAGTAGAACCTACCCACCCTCACGGCCTGGAGTTCTTGT GTCAGTAGAACCTACCCACCCTCAAGGCCTGGAGTTCTTGT < 41bp 0.372467136538989 0.797263914740203 0.013073742 0.03120637 prediction 0.594527829480406 Functional Gain - RIOK3 ENSG00000101782 CDS Human protein_coding chr18:21057186 chr18:21057190 nonsynonymous SNV 0.989 1 25 hm5C_associated_SNPs_102130 0 0 1 0 2 RIOK3 chr18:21057232 5'GT 21057232 Upstream 43bp
chr17 37360340 37360340 1 + C A UCEC 37360336 + 37360316 37360356 41 CGTGTACCCTGCAGGTATCACAGCCTGTACCTGAAGGTGAA CGTGTACCCTGCAGGTATCACAGCATGTACCTGAAGGTGAA < 41bp 0.392959839391268 0.797248593115293 0.3183733 0.28198513 prediction 0.594497186230585 Functional Gain - RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360336 chr17:37360340 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_102132 0 0 1 0 1 RPL19 chr17:37360330 3'AG 37360330 Downstream 11bp
chr10 47658597 47658597 1 + T G rs78983634 47658595 + 47658575 47658615 41 GAGCAGGAAGCCTTCGGTACCATGGACCTGACTGGAGAATA GAGCAGGAAGCCTTCGGTACCAGGGACCTGACTGGAGAATA < 41bp 0.544109233642101 0.841272594853968 0.3622934 0.91775954 prediction 0.594326722423735 Functional Gain - ANTXRL ENSG00000198250 CDS Human other chr10:47658595 chr10:47658597 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_102136 0 0 0 0 1 ANTXRL chr10:47658576 3'AG 47658576 Downstream 22bp
chr2 217526674 217526674 1 + C A STAD 217526670 + 217526650 217526690 41 GGCCCTCTGGAGCACCTCTACTCCCTGCACATCCCCAACTG GGCCCTCTGGAGCACCTCTACTCCATGCACATCCCCAACTG < 41bp 0.614907520147868 0.91200965250467 0.23588035 0.9510912 prediction 0.594204264713603 Functional Gain - IGFBP2 ENSG00000115457 CDS Human protein_coding chr2:217526670 chr2:217526674 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_102138 0 0 1 2 2 IGFBP2 chr2:217526581 3'AG 217526581 Downstream 94bp
chr2 217526674 217526674 1 + C A STAD 217526670 + 217526650 217526690 41 GGCCCTCTGGAGCACCTCTACTCCCTGCACATCCCCAACTG GGCCCTCTGGAGCACCTCTACTCCATGCACATCCCCAACTG < 41bp 0.614907520147868 0.91200965250467 0.23588035 0.9510912 prediction 0.594204264713603 Functional Gain - IGFBP2 ENSG00000115457 CDS Human protein_coding chr2:217526670 chr2:217526674 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_102138 0 0 1 2 2 IGFBP2 chr2:217526721 5'GT 217526721 Upstream 48bp
chr16 77756433 77756433 1 + C A rs114814225 77756429 + 77756409 77756449 41 CTGCTCTGCGCAAGCGCGACCGACCGAGCAGCTCCGAGGAG CTGCTCTGCGCAAGCGCGACCGACAGAGCAGCTCCGAGGAG < 41bp 0.551436194725737 0.848506567787889 0.0861792 0.15814665 prediction 0.594140746124304 Functional Gain - NUDT7 ENSG00000140876 UTR5 Human protein_coding chr16:77756429 chr16:77756433 . . 0 25 hm5C_associated_SNPs_102141 0 0 1 0 1 NUDT7 chr16:77756514 5'GT 77756514 Upstream 82bp
chr17 38346903 38346903 1 + C G rs368873031 38346902 + 38346882 38346922 41 CTGCCACCAGGTGCCCCTCCCCGAGGAGATCCAGGTCTCCC CTGCCACCAGGTGCCCCTCCCGGAGGAGATCCAGGTCTCCC < 41bp 0.481212750762007 0.796925459516739 0.88246334 0.9382217 prediction 0.593850919033478 Functional Gain - RAPGEFL1 ENSG00000108352 CDS Human protein_coding chr17:38346902 chr17:38346903 synonymous SNV . 0 22 hm5C_associated_SNPs_102147 0 0 1 0 1 RAPGEFL1 chr17:38346892 3'AG 38346892 Downstream 12bp
chr5 85915186 85915186 1 + T G SKCM 85915183 + 85915163 85915203 41 CCAACAGAATTTGCCATTTTCAGTGGAAAACAAGTGGTCGT CCAACAGAATTTGCCATTTTCAGGGGAAAACAAGTGGTCGT < 41bp 0.577455395213829 0.874321083149582 0.40248713 0.9447777 prediction 0.593731375871506 Functional Gain - COX7C ENSG00000127184 CDS Human protein_coding chr5:85915183 chr5:85915186 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_102153 0 0 1 0 1 COX7C chr5:85915170 3'AG 85915170 Downstream 17bp
chr11 120180221 120180221 1 + C A HNSC 120180217 + 120180197 120180237 41 GTGGTGAGGGTCTGGTTCTGCAACCGACGCCAAAAGGAGAA GTGGTGAGGGTCTGGTTCTGCAACAGACGCCAAAAGGAGAA < 41bp 0.38886417958756 0.796810990518074 0.24306723 0.31139058 prediction 0.593621981036148 Functional Gain - POU2F3 ENSG00000137709 CDS Human protein_coding chr11:120180217 chr11:120180221 synonymous SNV . 0 25 hm5C_associated_SNPs_102158 0 0 0 0 2 POU2F3 chr11:120180134 3'AG 120180134 Downstream 88bp
chr11 120180221 120180221 1 + C A HNSC 120180217 + 120180197 120180237 41 GTGGTGAGGGTCTGGTTCTGCAACCGACGCCAAAAGGAGAA GTGGTGAGGGTCTGGTTCTGCAACAGACGCCAAAAGGAGAA < 41bp 0.38886417958756 0.796810990518074 0.24306723 0.31139058 prediction 0.593621981036148 Functional Gain - POU2F3 ENSG00000137709 CDS Human protein_coding chr11:120180217 chr11:120180221 synonymous SNV . 0 25 hm5C_associated_SNPs_102158 0 0 0 0 2 POU2F3 chr11:120180295 5'GT 120180295 Upstream 75bp
chr1 15978294 15978294 1 + C G rs139539436 15978293 + 15978273 15978313 41 GGAGAGCTACCAGAGTGTGCCCGGTTGGCATATGGGGCTGG GGAGAGCTACCAGAGTGTGCCGGGTTGGCATATGGGGCTGG < 41bp 0.503002165371464 0.79977385688827 0.0786899 0.8791991 prediction 0.59354338303361 Functional Gain - DDI2 ENSG00000197312 CDS Human protein_coding chr1:15978293 chr1:15978294 nonsynonymous SNV 0.987 1 22 hm5C_associated_SNPs_102160 0 0 1 0 1 DDI2 chr1:15978390 5'GT 15978390 Upstream 97bp
chr7 133932357 133932357 1 + T A rs34904752 133932353 + 133932333 133932373 41 ACGAGGCAGCCCGGCAAGCTCTAATGGGAAGGATACGCCCT ACGAGGCAGCCCGGCAAGCTCTAAAGGGAAGGATACGCCCT < 41bp 0.542550161675594 0.839320904168188 0.09010959 0.11441693 prediction 0.593541484985188 Functional Gain - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133932353 chr7:133932357 nonsynonymous SNV 0.537 0 25 hm5C_associated_SNPs_102161 0 0 0 0 2 LRGUK chr7:133932308 3'AG 133932308 Downstream 50bp
chr7 133932357 133932357 1 + T A rs34904752 133932353 + 133932333 133932373 41 ACGAGGCAGCCCGGCAAGCTCTAATGGGAAGGATACGCCCT ACGAGGCAGCCCGGCAAGCTCTAAAGGGAAGGATACGCCCT < 41bp 0.542550161675594 0.839320904168188 0.09010959 0.11441693 prediction 0.593541484985188 Functional Gain - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133932353 chr7:133932357 nonsynonymous SNV 0.537 0 25 hm5C_associated_SNPs_102161 0 0 0 0 2 LRGUK chr7:133932396 5'GT 133932396 Upstream 40bp
chr16 21696591 21696591 1 + C A LUSC 21696587 + 21696567 21696607 41 ACCTGGAGCAGCGTCTGCACCAGCCCCAGAAGCTGCTGGAG ACCTGGAGCAGCGTCTGCACCAGCACCAGAAGCTGCTGGAG < 41bp 0.388296266860214 0.796755304022065 0.21610749 0.24964911 prediction 0.593510608044131 Functional Gain - OTOA ENSG00000155719 CDS Human protein_coding chr16:21696587 chr16:21696591 nonsynonymous SNV 0.732 4 25 hm5C_associated_SNPs_102163 0 0 0 0 2 OTOA chr16:21696551 3'AG 21696551 Downstream 41bp
chr16 21696591 21696591 1 + C A LUSC 21696587 + 21696567 21696607 41 ACCTGGAGCAGCGTCTGCACCAGCCCCAGAAGCTGCTGGAG ACCTGGAGCAGCGTCTGCACCAGCACCAGAAGCTGCTGGAG < 41bp 0.388296266860214 0.796755304022065 0.21610749 0.24964911 prediction 0.593510608044131 Functional Gain - OTOA ENSG00000155719 CDS Human protein_coding chr16:21696587 chr16:21696591 nonsynonymous SNV 0.732 4 25 hm5C_associated_SNPs_102163 0 0 0 0 2 OTOA chr16:21696682 5'GT 21696682 Upstream 92bp
chr19 56652664 56652664 1 + C A rs565633422 56652660 + 56652640 56652680 41 GCCTGCTGGGGCATGGAGTCCCGGCGAGCTTTGTGCGCATG GCCTGCTGGGGCATGGAGTCCCGGAGAGCTTTGTGCGCATG < 41bp 0.542109176578531 0.838831982675942 0.3805255 0.5073905 prediction 0.593445612194823 Functional Gain - ZNF444 ENSG00000167685 UTR5 Human protein_coding chr19:56652660 chr19:56652664 . . 0 25 hm5C_associated_SNPs_102166 0 0 0 0 1 ZNF444 chr19:56652726 5'GT 56652726 Upstream 63bp
chr19 1082844 1082844 1 + C G rs115553053 1082843 + 1082823 1082863 41 CCTTGACTCTGCGCAGCTTCCCGAGCCGCTCATCTCCTTCC CCTTGACTCTGCGCAGCTTCCGGAGCCGCTCATCTCCTTCC < 41bp 0.515261906169303 0.811968521995488 0.89462197 0.9393705 prediction 0.59341323165237 Functional Gain - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1082843 chr19:1082844 synonymous SNV . 0 22 hm5C_associated_SNPs_102169 0 0 0 0 1 ARHGAP45 chr19:1082839 3'AG 1082839 Downstream 6bp
chr9 136320455 136320455 1 + C A COAD 136320451 + 136320431 136320471 41 ATCCAGCGCCGGCGTGACACCTGCCTCGGACCCCAGGCCCA ATCCAGCGCCGGCGTGACACCTGCATCGGACCCCAGGCCCA < 41bp 0.600362427885927 0.897054578565999 0.23572156 0.33288938 prediction 0.593384301360144 Functional Gain - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136320451 chr9:136320455 nonsynonymous SNV 0.063 0 25 hm5C_associated_SNPs_102172 0 0 1 0 1 ADAMTS13 chr9:136320407 3'AG 136320407 Downstream 49bp
chr20 16730619 16730619 1 + T G STAD 16730617 + 16730597 16730637 41 GGAACTTGGTCAAGGAACAGCGTGTGTACCAGGAAGCTACC GGAACTTGGTCAAGGAACAGCGGGTGTACCAGGAAGCTACC < 41bp 0.536371396574122 0.833026137626223 0.42325574 0.9114923 prediction 0.593309482104202 Functional Gain - OTOR ENSG00000125879 CDS Human protein_coding chr20:16730617 chr20:16730619 synonymous SNV . 0 23 hm5C_associated_SNPs_102177 0 0 0 1 2 OTOR chr20:16730548 3'AG 16730548 Downstream 72bp
chr20 16730619 16730619 1 + T G STAD 16730617 + 16730597 16730637 41 GGAACTTGGTCAAGGAACAGCGTGTGTACCAGGAAGCTACC GGAACTTGGTCAAGGAACAGCGGGTGTACCAGGAAGCTACC < 41bp 0.536371396574122 0.833026137626223 0.42325574 0.9114923 prediction 0.593309482104202 Functional Gain - OTOR ENSG00000125879 CDS Human protein_coding chr20:16730617 chr20:16730619 synonymous SNV . 0 23 hm5C_associated_SNPs_102177 0 0 0 1 2 OTOR chr20:16730655 5'GT 16730655 Upstream 37bp
chr2 139308582 139308582 1 + T A ESCA 139308578 + 139308558 139308598 41 AGTGAAGTTCGAGCAAAATTCAAATTTTCCCTTCTGAATGC AGTGAAGTTCGAGCAAAATTCAAAATTTCCCTTCTGAATGC < 41bp 0.506655630619211 0.803305428278076 0.11743131 0.17256856 prediction 0.593299595317731 Functional Gain - SPOPL ENSG00000144228 CDS Human protein_coding chr2:139308578 chr2:139308582 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102178 0 0 1 0 1 SPOPL chr2:139308624 5'GT 139308624 Upstream 43bp
chr12 123879801 123879801 1 + C A rs150318048 123879797 + 123879777 123879817 41 AAAAGCCCATCAAGGGCAAACAGGCCCCCCGAAAAAAGTAA AAAAGCCCATCAAGGGCAAACAGGACCCCCGAAAAAAGTAA < 41bp 0.39758387306345 0.796647204573435 0.15825126 0.030721575 prediction 0.59329440914687 Functional Gain - KMT5A ENSG00000183955 CDS Human protein_coding chr12:123879797 chr12:123879801 nonsynonymous SNV 0.364 1 25 hm5C_associated_SNPs_102179 0 0 1 0 1 KMT5A chr12:123879813 5'GT 123879813 Upstream 13bp
chrX 2707712 2707712 1 + C A UCEC 2707708 + 2707688 2707728 41 TCTACCCAAGGCCAAAGCCACGCCCTCAACCCCAGCCTGGC TCTACCCAAGGCCAAAGCCACGCCATCAACCCCAGCCTGGC < 41bp 0.393790651430288 0.796591624817982 0.09699389 0.077329874 prediction 0.593183249635963 Functional Gain - XG ENSG00000124343 CDS Human protein_coding chrX:2707708 chrX:2707712 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_102182 0 0 0 0 1 XG chrX:2707685 3'AG 2707685 Downstream 28bp
chr20 18608865 18608865 1 + T G LUSC 18608862 + 18608842 18608882 41 CCAGCTCCCGGCACTGCTACCTCTGACCCAAAGCAGGTAAG CCAGCTCCCGGCACTGCTACCTCGGACCCAAAGCAGGTAAG < 41bp 0.416258760125095 0.796588176854828 0.2578063 0.58519787 prediction 0.593176353709657 Functional Gain - DTD1 ENSG00000125821 CDS Human protein_coding chr20:18608862 chr20:18608865 synonymous SNV . 0 24 hm5C_associated_SNPs_102183 0 0 1 0 2 DTD1 chr20:18608771 3'AG 18608771 Downstream 95bp
chr20 18608865 18608865 1 + T G LUSC 18608862 + 18608842 18608882 41 CCAGCTCCCGGCACTGCTACCTCTGACCCAAAGCAGGTAAG CCAGCTCCCGGCACTGCTACCTCGGACCCAAAGCAGGTAAG < 41bp 0.416258760125095 0.796588176854828 0.2578063 0.58519787 prediction 0.593176353709657 Functional Gain - DTD1 ENSG00000125821 CDS Human protein_coding chr20:18608862 chr20:18608865 synonymous SNV . 0 24 hm5C_associated_SNPs_102183 0 0 1 0 2 DTD1 chr20:18608877 5'GT 18608877 Upstream 13bp
chr5 167850580 167850580 1 + C G HNSC 167850579 + 167850559 167850599 41 CCTGTCCTCAGGCAGCAGCCCCGGATCCCTCACGTCCAGCC CCTGTCCTCAGGCAGCAGCCCGGGATCCCTCACGTCCAGCC < 41bp 0.510773236001473 0.807356280812304 0.6505217 0.85659295 prediction 0.593166089621662 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167850579 chr5:167850580 synonymous SNV . 0 22 hm5C_associated_SNPs_102184 0 0 1 0 1 WWC1 chr5:167850538 3'AG 167850538 Downstream 43bp
chr11 64853966 64853966 1 + C G UCEC 64853965 + 64853945 64853985 41 ACCTGCCGGCTATCAGTGCCCCAGCTGCAATGGCCCCATCT ACCTGCCGGCTATCAGTGCCCGAGCTGCAATGGCCCCATCT < 41bp 0.509786192663641 0.806353134158189 0.2424855 0.5825335 prediction 0.593133882989095 Functional Gain - ZFPL1 ENSG00000162300 CDS Human protein_coding chr11:64853965 chr11:64853966 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_102186 0 0 1 0 1 ZFPL1 chr11:64853887 3'AG 64853887 Downstream 80bp
chr20 30674563 30674563 1 + T G LUSC 30674560 + 30674540 30674580 41 CAAGCTGGTCAAACTTCATGCGGTGGTCACCAAGGAGCCCA CAAGCTGGTCAAACTTCATGCGGGGGTCACCAAGGAGCCCA < 41bp 0.595746030444669 0.89229065863283 0.19275734 0.8546644 prediction 0.593089256376321 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30674560 chr20:30674563 nonsynonymous SNV 0.075 4 24 hm5C_associated_SNPs_102189 0 0 0 0 1 HCK chr20:30674610 5'GT 30674610 Upstream 48bp
chr6 88049844 88049844 1 + T G COAD 88049841 + 88049821 88049861 41 TTTTCTTTGACAGAACAAACCTGTAATGGCTTTCGGATTGG TTTTCTTTGACAGAACAAACCTGGAATGGCTTTCGGATTGG < 41bp 0.559626590854699 0.856119972097068 0.20087993 0.5167522 prediction 0.592986762484738 Functional Gain - SMIM8 ENSG00000111850 CDS Human protein_coding chr6:88049841 chr6:88049844 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_102193 0 0 1 0 1 SMIM8 chr6:88049834 3'AG 88049834 Downstream 11bp
chr19 11793389 11793389 1 + T G rs575952815 11793386 + 11793366 11793406 41 AGTGACCTTTGAGGATGTGGCTGTGAACTTCACCCAGGAGG AGTGACCTTTGAGGATGTGGCTGGGAACTTCACCCAGGAGG < 41bp 0.44780096045365 0.796467370874141 0.13530591 0.38185322 prediction 0.592934741748281 Functional Gain - ZNF833P ENSG00000197332;ENSG00000267343 ncRNA_exonic Human other chr19:11793386 chr19:11793389 . . 0 24 hm5C_associated_SNPs_102194 0 0 0 0 2 ZNF833P chr19:11793361 3'AG 11793361 Downstream 29bp
chr19 11793389 11793389 1 + T G rs575952815 11793386 + 11793366 11793406 41 AGTGACCTTTGAGGATGTGGCTGTGAACTTCACCCAGGAGG AGTGACCTTTGAGGATGTGGCTGGGAACTTCACCCAGGAGG < 41bp 0.44780096045365 0.796467370874141 0.13530591 0.38185322 prediction 0.592934741748281 Functional Gain - ZNF833P ENSG00000197332;ENSG00000267343 ncRNA_exonic Human other chr19:11793386 chr19:11793389 . . 0 24 hm5C_associated_SNPs_102194 0 0 0 0 2 ZNF833P chr19:11793487 5'GT 11793487 Upstream 99bp
chr1 111825335 111825335 1 + C A LUSC 111825331 + 111825311 111825351 41 CGTGTGAGCCCTCCTCAGGACAAGCATCTCTTCACTGTCCT CGTGTGAGCCCTCCTCAGGACAAGAATCTCTTCACTGTCCT < 41bp 0.451272336211741 0.796446452587686 0.059961677 0.12567109 prediction 0.592892905175372 Functional Gain - CHIAP2 ENSG00000203878 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:111825331 chr1:111825335 . . 0 25 hm5C_associated_SNPs_102195 0 0 0 0 1 CHIAP2 chr1:111825358 5'GT 111825358 Upstream 24bp
chr17 66033297 66033297 1 + T A LUSC 66033293 + 66033273 66033313 41 ACACCAGCTGCCCGTCTTCACAGATTCAAGAACAAGGGAAA ACACCAGCTGCCCGTCTTCACAGAATCAAGAACAAGGGAAA < 41bp 0.512413967483181 0.808815458118005 0.2464535 0.16386762 prediction 0.592802981269649 Functional Gain - KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033293 chr17:66033297 nonsynonymous SNV 0.862 3 25 hm5C_associated_SNPs_102198 0 0 1 0 2 KPNA2 chr17:66033226 3'AG 66033226 Downstream 72bp
chr17 66033297 66033297 1 + T A LUSC 66033293 + 66033273 66033313 41 ACACCAGCTGCCCGTCTTCACAGATTCAAGAACAAGGGAAA ACACCAGCTGCCCGTCTTCACAGAATCAAGAACAAGGGAAA < 41bp 0.512413967483181 0.808815458118005 0.2464535 0.16386762 prediction 0.592802981269649 Functional Gain - KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033293 chr17:66033297 nonsynonymous SNV 0.862 3 25 hm5C_associated_SNPs_102198 0 0 1 0 2 KPNA2 chr17:66033323 5'GT 66033323 Upstream 27bp
chr18 63530135 63530135 1 + T A LIHC 63530131 + 63530111 63530151 41 GGAGCCCTGATAGCCATACTCGCCTGTGTCTTGACATTATT GGAGCCCTGATAGCCATACTCGCCAGTGTCTTGACATTATT < 41bp 0.522342794247088 0.81872727430476 0.17391446 0.5212516 prediction 0.592768960115345 Functional Gain - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63530131 chr18:63530135 nonsynonymous SNV 0.934 3 25 hm5C_associated_SNPs_102202 0 0 0 0 1 CDH7 chr18:63530153 5'GT 63530153 Upstream 19bp
chrX 54836400 54836400 1 + T A COAD 54836396 + 54836376 54836416 41 GACTGATACCCAGGTTCTGGCAGCTGAAAACAAGAGTCTAG GACTGATACCCAGGTTCTGGCAGCAGAAAACAAGAGTCTAG < 41bp 0.506994045470561 0.803367124334869 0.27473128 0.16429952 prediction 0.592746157728615 Functional Gain - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54836396 chrX:54836400 synonymous SNV . 0 25 hm5C_associated_SNPs_102203 0 0 1 0 1 MAGED2 chrX:54836356 3'AG 54836356 Downstream 45bp
chr7 23313746 23313746 1 + T G BLCA 23313744 + 23313724 23313764 41 AATGTGGTCAGAAGCAAAGGCCTGAGTGTCTTTCTCAACCG AATGTGGTCAGAAGCAAAGGCCGGAGTGTCTTTCTCAACCG < 41bp 0.512281938716027 0.808633765181617 0.04325244 0.33852974 prediction 0.592703652931179 Functional Gain - GPNMB ENSG00000136235 CDS Human protein_coding chr7:23313744 chr7:23313746 nonsynonymous SNV 0.857 3 23 hm5C_associated_SNPs_102205 0 0 0 0 1 GPNMB chr7:23313684 3'AG 23313684 Downstream 63bp
chr6 161134078 161134078 1 + C A rs146415258 161134074 + 161134054 161134094 41 GGAGAACTACTGCAGGAATCCAGACAACGATCCGCAGGGGC GGAGAACTACTGCAGGAATCCAGAAAACGATCCGCAGGGGC < 41bp 0.391240417829004 0.79632775293622 0.39018908 0.43801862 prediction 0.592655505872439 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161134074 chr6:161134078 nonsynonymous SNV 0.620 1 25 hm5C_associated_SNPs_102208 0 0 0 0 2 PLG chr6:161134018 3'AG 161134018 Downstream 61bp
chr6 161134078 161134078 1 + C A rs146415258 161134074 + 161134054 161134094 41 GGAGAACTACTGCAGGAATCCAGACAACGATCCGCAGGGGC GGAGAACTACTGCAGGAATCCAGAAAACGATCCGCAGGGGC < 41bp 0.391240417829004 0.79632775293622 0.39018908 0.43801862 prediction 0.592655505872439 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161134074 chr6:161134078 nonsynonymous SNV 0.620 1 25 hm5C_associated_SNPs_102208 0 0 0 0 2 PLG chr6:161134157 5'GT 161134157 Upstream 80bp
chr14 101195281 101195281 1 + C A LUAD 101195277 + 101195257 101195297 41 CCCCCACCCATTGCAGGTGCCAGCCTGGCTGGCAGGGTCCC CCCCCACCCATTGCAGGTGCCAGCATGGCTGGCAGGGTCCC < 41bp 0.397922153057016 0.79632730564292 0.38316485 0.4778465 prediction 0.592654611285839 Functional Gain - DLK1 ENSG00000185559 CDS Human protein_coding chr14:101195277 chr14:101195281 nonsynonymous SNV 0.970 3 25 hm5C_associated_SNPs_102209 0 0 1 0 1 DLK1 chr14:101195273 3'AG 101195273 Downstream 9bp
chr2 113736268 113736268 1 + C A UCEC 113736264 + 113736244 113736284 41 GTGGAGGAAGGGCCGTCTATCAATCAAGTGAATCAAATGCT GTGGAGGAAGGGCCGTCTATCAATAAAGTGAATCAAATGCT < 41bp 0.425444739965326 0.796317562181782 0.16981998 0.2763723 prediction 0.592635124363563 Functional Gain - IL36G ENSG00000136688 CDS Human protein_coding chr2:113736264 chr2:113736268 stopgain 0.001 0 25 hm5C_associated_SNPs_102210 0 0 0 0 2 IL36G chr2:113736197 3'AG 113736197 Downstream 72bp
chr2 113736268 113736268 1 + C A UCEC 113736264 + 113736244 113736284 41 GTGGAGGAAGGGCCGTCTATCAATCAAGTGAATCAAATGCT GTGGAGGAAGGGCCGTCTATCAATAAAGTGAATCAAATGCT < 41bp 0.425444739965326 0.796317562181782 0.16981998 0.2763723 prediction 0.592635124363563 Functional Gain - IL36G ENSG00000136688 CDS Human protein_coding chr2:113736264 chr2:113736268 stopgain 0.001 0 25 hm5C_associated_SNPs_102210 0 0 0 0 2 IL36G chr2:113736270 5'GT 113736270 Upstream 3bp
chr8 36780120 36780120 1 + C A UCEC 36780116 + 36780096 36780136 41 TTCTACGGGCACTGTTTTTTCCGGCAGCTTCTTGGATTCTC TTCTACGGGCACTGTTTTTTCCGGAAGCTTCTTGGATTCTC < 41bp 0.407072573399148 0.796285050084238 0.8434937 0.89053404 prediction 0.592570100168477 Functional Gain - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36780116 chr8:36780120 synonymous SNV . 0 25 hm5C_associated_SNPs_102212 0 0 0 1 1 KCNU1 chr8:36780147 5'GT 36780147 Upstream 28bp
chr16 721934 721934 1 + C G HNSC 721933 + 721913 721953 41 CCCAGCAGCGCCCTGGGGCCCCGAGCTCCCACGCACAGTCC CCCAGCAGCGCCCTGGGGCCCGGAGCTCCCACGCACAGTCC < 41bp 0.507580348613488 0.803860185111658 0.41565058 0.4423921 prediction 0.59255967299634 Functional Gain - RHOT2 ENSG00000140983 CDS Human protein_coding chr16:721933 chr16:721934 synonymous SNV . 0 22 hm5C_associated_SNPs_102213 0 0 1 0 2 RHOT2 chr16:721860 3'AG 721860 Downstream 75bp
chr16 721934 721934 1 + C G HNSC 721933 + 721913 721953 41 CCCAGCAGCGCCCTGGGGCCCCGAGCTCCCACGCACAGTCC CCCAGCAGCGCCCTGGGGCCCGGAGCTCCCACGCACAGTCC < 41bp 0.507580348613488 0.803860185111658 0.41565058 0.4423921 prediction 0.59255967299634 Functional Gain - RHOT2 ENSG00000140983 CDS Human protein_coding chr16:721933 chr16:721934 synonymous SNV . 0 22 hm5C_associated_SNPs_102213 0 0 1 0 2 RHOT2 chr16:722002 5'GT 722002 Upstream 69bp
chr4 110415804 110415804 1 + C G GBM 110415803 + 110415783 110415823 41 CATCAGCAAGCAGTCCTGCTCCTGATCCCGCCCCTGAACCT CATCAGCAAGCAGTCCTGCTCGTGATCCCGCCCCTGAACCT < 41bp 0.507312573641094 0.803513007876463 0.14119545 0.5639591 prediction 0.592400868470737 Functional Gain - SEC24B ENSG00000138802 CDS Human protein_coding chr4:110415803 chr4:110415804 nonsynonymous SNV 0.948 1 22 hm5C_associated_SNPs_102216 0 0 1 0 1 SEC24B chr4:110415771 3'AG 110415771 Downstream 34bp
chr5 167855099 167855099 1 + C A rs6874818 167855095 + 167855075 167855115 41 CTGTGTCTCAGCCGCCGTATCGGACGAGTCAGTGGCTGGAG CTGTGTCTCAGCCGCCGTATCGGAAGAGTCAGTGGCTGGAG < 41bp 0.606545503620749 0.902696324470325 0.88340926 0.90736306 prediction 0.592301641699151 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167855095 chr5:167855099 nonsynonymous SNV 0.029 3 25 hm5C_associated_SNPs_102218 0 0 1 0 2 WWC1 chr5:167855038 3'AG 167855038 Downstream 62bp
chr5 167855099 167855099 1 + C A rs6874818 167855095 + 167855075 167855115 41 CTGTGTCTCAGCCGCCGTATCGGACGAGTCAGTGGCTGGAG CTGTGTCTCAGCCGCCGTATCGGAAGAGTCAGTGGCTGGAG < 41bp 0.606545503620749 0.902696324470325 0.88340926 0.90736306 prediction 0.592301641699151 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167855095 chr5:167855099 nonsynonymous SNV 0.029 3 25 hm5C_associated_SNPs_102218 0 0 1 0 2 WWC1 chr5:167855146 5'GT 167855146 Upstream 48bp
chr7 99971341 99971341 1 + C A PAAD 99971337 + 99971317 99971357 41 TGCTGCCGCCAGCATTTCTGCAGCCTAGTGAGTACCCAGGA TGCTGCCGCCAGCATTTCTGCAGCATAGTGAGTACCCAGGA < 41bp 0.592702979700624 0.888698394647112 0.31727594 0.2991321 prediction 0.591990829892977 Functional Gain - PILRA ENSG00000085514 CDS Human protein_coding chr7:99971337 chr7:99971341 nonsynonymous SNV 0.047 2 25 hm5C_associated_SNPs_102226 0 0 1 0 1 PILRA chr7:99971343 5'GT 99971343 Upstream 3bp
chr12 27787921 27787921 1 + C A READ 27787917 + 27787897 27787937 41 CTCCATTCATGGGAAGTTTGCGAGCTCTGCACCTTGTGGAA CTCCATTCATGGGAAGTTTGCGAGATCTGCACCTTGTGGAA < 41bp 0.420195208361537 0.795956211028064 0.91919136 0.93435603 prediction 0.591912422056127 Functional Gain - PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27787917 chr12:27787921 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_102230 0 0 1 0 1 PPFIBP1 chr12:27787843 3'AG 27787843 Downstream 79bp
chr1 153751617 153751617 1 + C G rs144302187 153751616 + 153751596 153751636 41 GGGGGAGAATGTGGCCACAACCGAGGTGGCAGAGGTCTTCG GGGGGAGAATGTGGCCACAACGGAGGTGGCAGAGGTCTTCG < 41bp 0.495534082408266 0.795923711207985 0.8802513 0.8662145 prediction 0.591847422415969 Functional Gain - SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153751616 chr1:153751617 synonymous SNV . 0 22 hm5C_associated_SNPs_102232 0 0 0 0 2 SLC27A3 chr1:153751590 3'AG 153751590 Downstream 28bp
chr1 153751617 153751617 1 + C G rs144302187 153751616 + 153751596 153751636 41 GGGGGAGAATGTGGCCACAACCGAGGTGGCAGAGGTCTTCG GGGGGAGAATGTGGCCACAACGGAGGTGGCAGAGGTCTTCG < 41bp 0.495534082408266 0.795923711207985 0.8802513 0.8662145 prediction 0.591847422415969 Functional Gain - SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153751616 chr1:153751617 synonymous SNV . 0 22 hm5C_associated_SNPs_102232 0 0 0 0 2 SLC27A3 chr1:153751687 5'GT 153751687 Upstream 71bp
chrX 103432834 103432834 1 + C A LUSC 103432830 + 103432810 103432850 41 TGGAGTGAGCGGTGCCAGTGCCAGCGCCAGCAGCAGCAGTG TGGAGTGAGCGGTGCCAGTGCCAGAGCCAGCAGCAGCAGTG < 41bp 0.408958040740694 0.795888464799417 0.6449852 0.8882389 prediction 0.591776929598834 Functional Gain - FAM199X ENSG00000123575 CDS Human protein_coding chrX:103432830 chrX:103432834 nonsynonymous SNV 0.969 4 25 hm5C_associated_SNPs_102236 0 0 1 0 1 FAM199X chrX:103432858 5'GT 103432858 Upstream 25bp
chr3 25502818 25502818 1 + T A STAD 25502814 + 25502794 25502834 41 GGGTACCACTATGGGGTCAGCGCCTGTGAGGGATGTAAGGT GGGTACCACTATGGGGTCAGCGCCAGTGAGGGATGTAAGGT < 41bp 0.476259127135019 0.79588662262376 0.09937075 0.63641936 prediction 0.59177324524752 Functional Gain - RARB ENSG00000077092 CDS Human protein_coding chr3:25502814 chr3:25502818 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_102237 0 0 1 0 1 RARB chr3:25502832 5'GT 25502832 Upstream 15bp
chr16 778414 778414 1 + C A ACC 778410 + 778390 778430 41 GGACGATTGCCCGGACCCACCCGCCCTGTTCTCGGGTACCC GGACGATTGCCCGGACCCACCCGCACTGTTCTCGGGTACCC < 41bp 0.410739881900608 0.795859573000715 0.07934585 0.14142072 prediction 0.591719146001429 Functional Gain - HAGHL ENSG00000103253 CDS Human protein_coding chr16:778410 chr16:778414 synonymous SNV . 0 25 hm5C_associated_SNPs_102239 0 0 0 0 2 HAGHL chr16:778316 3'AG 778316 Downstream 99bp
chr16 778414 778414 1 + C A ACC 778410 + 778390 778430 41 GGACGATTGCCCGGACCCACCCGCCCTGTTCTCGGGTACCC GGACGATTGCCCGGACCCACCCGCACTGTTCTCGGGTACCC < 41bp 0.410739881900608 0.795859573000715 0.07934585 0.14142072 prediction 0.591719146001429 Functional Gain - HAGHL ENSG00000103253 CDS Human protein_coding chr16:778410 chr16:778414 synonymous SNV . 0 25 hm5C_associated_SNPs_102239 0 0 0 0 2 HAGHL chr16:778424 5'GT 778424 Upstream 11bp
chr8 97847387 97847387 1 + T G LUAD 97847385 + 97847365 97847405 41 TTGGCATCTCTCATTCGATCCGTGGCCTCCTTCTCCATCTA TTGGCATCTCTCATTCGATCCGGGGCCTCCTTCTCCATCTA < 41bp 0.474286634865955 0.795827113666486 0.051897734 0.83657193 prediction 0.591654227332971 Functional Gain - CPQ ENSG00000104324 CDS Human protein_coding chr8:97847385 chr8:97847387 nonsynonymous SNV 0.964 3 23 hm5C_associated_SNPs_102241 0 0 1 0 1 CPQ chr8:97847408 5'GT 97847408 Upstream 22bp
chr12 102590450 102590450 1 - G T LUSC 102590454 - 102590434 102590474 41 AGATGTATGCTGGGAAGAGTCTACCGACCTTGTTGGCAAGT AGATGTATGCTGGGAAGAGTCTACAGACCTTGTTGGCAAGT < 41bp 0.597995074695917 0.893792643725536 0.06487721 0.3324536 prediction 0.591595138059237 Functional Gain - PMCH ENSG00000183395 CDS Human protein_coding chr12:102590454 chr12:102590450 synonymous SNV . 0 25 hm5C_associated_SNPs_102243 0 0 0 0 1 PMCH chr12:102590479 3'AG 102590479 Downstream 30bp
chr10 74034460 74034460 1 + T A rs111443920 74034456 + 74034436 74034476 41 TGTGCTCTCCTTTCCAGACACGGCTTACCTGGATGGGGTGT TGTGCTCTCCTTTCCAGACACGGCATACCTGGATGGGGTGT < 41bp 0.503138487066674 0.798933036341298 0.13965446 0.27094796 prediction 0.591589098549248 Functional Gain - DDIT4 ENSG00000168209 CDS Human protein_coding chr10:74034456 chr10:74034460 synonymous SNV . 0 25 hm5C_associated_SNPs_102244 0 0 1 0 1 DDIT4 chr10:74034453 3'AG 74034453 Downstream 8bp
chr3 133494403 133494403 1 + C A STAD 133494399 + 133494379 133494419 41 ACCTGGCCAGAGCCCCGAATCACGCTGTGGTCACACGGAAA ACCTGGCCAGAGCCCCGAATCACGATGTGGTCACACGGAAA < 41bp 0.614499107232477 0.910271888907046 0.21694174 0.30804384 prediction 0.591545563349136 Functional Gain - TF ENSG00000091513 CDS Human protein_coding chr3:133494399 chr3:133494403 nonsynonymous SNV 0.752 4 25 hm5C_associated_SNPs_102245 0 0 1 0 2 TF chr3:133494391 3'AG 133494391 Downstream 13bp
chr3 133494403 133494403 1 + C A STAD 133494399 + 133494379 133494419 41 ACCTGGCCAGAGCCCCGAATCACGCTGTGGTCACACGGAAA ACCTGGCCAGAGCCCCGAATCACGATGTGGTCACACGGAAA < 41bp 0.614499107232477 0.910271888907046 0.21694174 0.30804384 prediction 0.591545563349136 Functional Gain - TF ENSG00000091513 CDS Human protein_coding chr3:133494399 chr3:133494403 nonsynonymous SNV 0.752 4 25 hm5C_associated_SNPs_102245 0 0 1 0 2 TF chr3:133494461 5'GT 133494461 Upstream 59bp
chr9 134038483 134038483 1 + T G rs35631340 134038481 + 134038461 134038501 41 TGAATCACCTGGTGGATAGTCTTCAGCAGCTCCGCCTTTAC TGAATCACCTGGTGGATAGTCTGCAGCAGCTCCGCCTTTAC < 41bp 0.491540271724173 0.795772302604385 0.5165326 0.6406499 prediction 0.59154460520877 Functional Gain - NUP214 ENSG00000126883 CDS Human protein_coding chr9:134038481 chr9:134038483 synonymous SNV . 0 23 hm5C_associated_SNPs_102246 0 0 1 0 1 NUP214 chr9:134038560 5'GT 134038560 Upstream 78bp
chr16 57732824 57732824 1 + C G LGG 57732823 + 57732803 57732843 41 TTTCCTACAAAACCAACACACCCAAGGAGGAACACCTGCTG TTTCCTACAAAACCAACACACGCAAGGAGGAACACCTGCTG < 41bp 0.512041837153573 0.807801302120474 0.012170315 0.014874101 prediction 0.591518929933801 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57732823 chr16:57732824 nonsynonymous SNV 0.855 0 22 hm5C_associated_SNPs_102252 0 0 0 0 1 DRC7 chr16:57732762 3'AG 57732762 Downstream 63bp
chr17 9503470 9503470 1 + T A LUAD 9503466 + 9503446 9503486 41 CCCCAGGACTAAACTGCTGACAGATGTTGGGCCTGCGAAGG CCCCAGGACTAAACTGCTGACAGAAGTTGGGCCTGCGAAGG < 41bp 0.512897969291325 0.808612841458997 0.7208884 0.61071026 prediction 0.591429744335342 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9503466 chr17:9503470 nonsynonymous SNV 0.625 1 25 hm5C_associated_SNPs_102254 0 0 0 0 2 CFAP52 chr17:9503384 3'AG 9503384 Downstream 87bp
chr17 9503470 9503470 1 + T A LUAD 9503466 + 9503446 9503486 41 CCCCAGGACTAAACTGCTGACAGATGTTGGGCCTGCGAAGG CCCCAGGACTAAACTGCTGACAGAAGTTGGGCCTGCGAAGG < 41bp 0.512897969291325 0.808612841458997 0.7208884 0.61071026 prediction 0.591429744335342 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9503466 chr17:9503470 nonsynonymous SNV 0.625 1 25 hm5C_associated_SNPs_102254 0 0 0 0 2 CFAP52 chr17:9503500 5'GT 9503500 Upstream 31bp
chr1 202205096 202205096 1 + T G BLCA 202205093 + 202205073 202205113 41 GAGGAATCCCCGCAGAGGCGCTGTGGGAGCTGCCGAGCCTG GAGGAATCCCCGCAGAGGCGCTGGGGGAGCTGCCGAGCCTG < 41bp 0.399724872756597 0.795670316214632 0.40165 0.8372441 prediction 0.591340632429265 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202205093 chr1:202205096 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_102258 0 0 0 0 2 LGR6 chr1:202205050 3'AG 202205050 Downstream 47bp
chr1 202205096 202205096 1 + T G BLCA 202205093 + 202205073 202205113 41 GAGGAATCCCCGCAGAGGCGCTGTGGGAGCTGCCGAGCCTG GAGGAATCCCCGCAGAGGCGCTGGGGGAGCTGCCGAGCCTG < 41bp 0.399724872756597 0.795670316214632 0.40165 0.8372441 prediction 0.591340632429265 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202205093 chr1:202205096 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_102258 0 0 0 0 2 LGR6 chr1:202205121 5'GT 202205121 Upstream 26bp
chr6 151773689 151773689 1 + C A LUSC 151773685 + 151773665 151773705 41 GGGATCGCGGAAAGTGATGGCTGTCGTCCCGGCGTCTCTCT GGGATCGCGGAAAGTGATGGCTGTAGTCCCGGCGTCTCTCT < 41bp 0.585301974215664 0.880971508340802 0.37337244 0.48965678 prediction 0.591339068250276 Functional Gain - ARMT1 ENSG00000146476 CDS Human protein_coding chr6:151773685 chr6:151773689 synonymous SNV . 0 25 hm5C_associated_SNPs_102259 0 0 1 0 1 ARMT1 chr6:151773721 5'GT 151773721 Upstream 33bp
chr19 7595366 7595366 1 + C G SKCM 7595365 + 7595345 7595385 41 CCTCTTCATCGCGCTCATCACCGGCGCCTACGACACCATCA CCTCTTCATCGCGCTCATCACGGGCGCCTACGACACCATCA < 41bp 0.503594023440213 0.799256178591037 0.8590177 0.9221772 prediction 0.591324310301649 Functional Gain - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7595365 chr19:7595366 synonymous SNV . 0 22 hm5C_associated_SNPs_102260 0 0 0 0 1 MCOLN1 chr19:7595387 5'GT 7595387 Upstream 22bp
chr1 43805691 43805691 1 + C A OV 43805687 + 43805667 43805707 41 CCTCATCTCAGGACTCCAGCCTGGCAACTCCTACTGGCTGC CCTCATCTCAGGACTCCAGCCTGGAAACTCCTACTGGCTGC < 41bp 0.608306584686439 0.903936652584278 0.39765334 0.55305797 prediction 0.591260135795677 Functional Gain - MPL ENSG00000117400 CDS Human protein_coding chr1:43805687 chr1:43805691 synonymous SNV . 0 25 hm5C_associated_SNPs_102261 0 0 0 0 1 MPL chr1:43805635 3'AG 43805635 Downstream 57bp
chr15 78385042 78385042 1 + C A CESC 78385038 + 78385018 78385058 41 TGAAGTGGTTCATGGAGACACAGGCCCCCTTCATTCTGCAG TGAAGTGGTTCATGGAGACACAGGACCCCTTCATTCTGCAG < 41bp 0.593213934121909 0.888835312946247 0.15488666 0.15318334 prediction 0.591242757648676 Functional Gain - SH2D7 ENSG00000183476 CDS Human protein_coding chr15:78385038 chr15:78385042 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_102262 0 0 0 0 1 SH2D7 chr15:78385102 5'GT 78385102 Upstream 61bp
chr11 112084574 112084574 1 + C A OV 112084570 + 112084550 112084590 41 CTTCAGCCAGTGCTGTGAAACAGGCTGATGGAACGGTATGC CTTCAGCCAGTGCTGTGAAACAGGATGATGGAACGGTATGC < 41bp 0.591027046765542 0.886615108145337 0.8638379 0.8368094 prediction 0.591176122759591 Functional Gain - BCO2 ENSG00000197580 CDS Human protein_coding chr11:112084570 chr11:112084574 nonsynonymous SNV 0.838 1 25 hm5C_associated_SNPs_102265 0 0 0 0 1 BCO2 chr11:112084584 5'GT 112084584 Upstream 11bp
chr14 24676617 24676617 1 + C A UCEC 24676613 + 24676593 24676633 41 ATCCTTTACACTCTAGTGGTCGCCCATCTGCCCTTTGATGA ATCCTTTACACTCTAGTGGTCGCCAATCTGCCCTTTGATGA < 41bp 0.387452211696313 0.795567585456993 0.004764229 0.050801873 prediction 0.591135170913987 Functional Gain - TSSK4 ENSG00000139908 CDS Human protein_coding chr14:24676613 chr14:24676617 nonsynonymous SNV 0.154 1 25 hm5C_associated_SNPs_102267 0 0 0 0 1 TSSK4 chr14:24676715 5'GT 24676715 Upstream 99bp
chr11 64803081 64803081 1 + C G rs201383470 64803080 + 64803060 64803100 41 GAGGCATCTGGTTCCCCTGCCCGAGGCCCCCTCACCGAGGC GAGGCATCTGGTTCCCCTGCCGGAGGCCCCCTCACCGAGGC < 41bp 0.523151389620246 0.818657261889207 0.50178057 0.8934783 prediction 0.591011744537922 Functional Gain - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64803080 chr11:64803081 nonsynonymous SNV 0.099 1 22 hm5C_associated_SNPs_102270 0 0 0 0 2 SNX15 chr11:64802992 3'AG 64802992 Downstream 90bp
chr11 64803081 64803081 1 + C G rs201383470 64803080 + 64803060 64803100 41 GAGGCATCTGGTTCCCCTGCCCGAGGCCCCCTCACCGAGGC GAGGCATCTGGTTCCCCTGCCGGAGGCCCCCTCACCGAGGC < 41bp 0.523151389620246 0.818657261889207 0.50178057 0.8934783 prediction 0.591011744537922 Functional Gain - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64803080 chr11:64803081 nonsynonymous SNV 0.099 1 22 hm5C_associated_SNPs_102270 0 0 0 0 2 SNX15 chr11:64803135 5'GT 64803135 Upstream 55bp
chr1 156902332 156902332 1 + C G rs537758017 156902331 + 156902311 156902351 41 GTGGGGCTGCTGTGGCTGTCCCTGGCTGTGAGTCCCTTTCA GTGGGGCTGCTGTGGCTGTCCGTGGCTGTGAGTCCCTTTCA < 41bp 0.512758960256939 0.80825497306393 0.083874315 0.1787385 prediction 0.590992025613982 Functional Gain - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156902331 chr1:156902332 nonsynonymous SNV 0.986 0 22 hm5C_associated_SNPs_102271 0 0 0 0 1 LRRC71 chr1:156902337 5'GT 156902337 Upstream 6bp
chr20 25203612 25203612 1 + T A rs140279087 25203608 + 25203588 25203628 41 ACCTTGCAGCTGGTGTGGGCCTCATAGGTAAGGGGGCCCGG ACCTTGCAGCTGGTGTGGGCCTCAAAGGTAAGGGGGCCCGG < 41bp 0.502724732907953 0.798207343186743 0.385623 0.39287335 prediction 0.59096522055758 Functional Gain - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25203608 chr20:25203612 nonsynonymous SNV 0.933 4 25 hm5C_associated_SNPs_102273 0 0 1 0 1 ENTPD6 chr20:25203614 5'GT 25203614 Upstream 3bp
chr16 31308898 31308898 1 + C A GBM 31308894 + 31308874 31308914 41 GTGGACAGCAACGGCAGCACCGACCTGGTCCTCATCGGGGC GTGGACAGCAACGGCAGCACCGACATGGTCCTCATCGGGGC < 41bp 0.611602069786316 0.907082231976281 0.040228814 0.021999449 prediction 0.59096032437993 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31308894 chr16:31308898 nonsynonymous SNV 0.112 3 25 hm5C_associated_SNPs_102274 0 0 0 0 1 ITGAM chr16:31308975 5'GT 31308975 Upstream 78bp
chr9 102609889 102609889 1 + T G LUAD 102609887 + 102609867 102609907 41 GCCTGCCTGTCAGCACTGAGCATGATCACAGGTAAGCACCA GCCTGCCTGTCAGCACTGAGCAGGATCACAGGTAAGCACCA < 41bp 0.556274071027603 0.851700150003181 0.05635962 0.67332447 prediction 0.590852157951157 Functional Gain - NR4A3 ENSG00000119508 CDS Human protein_coding chr9:102609887 chr9:102609889 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_102276 0 0 0 0 1 NR4A3 chr9:102609897 5'GT 102609897 Upstream 9bp
chr6 161139758 161139758 1 + C A OV 161139754 + 161139734 161139774 41 TGAAAACTACTGCCGCAATCCTGACGGAAAAAGGGCCCCAT TGAAAACTACTGCCGCAATCCTGAAGGAAAAAGGGCCCCAT < 41bp 0.381102222478694 0.795396882926387 0.22793746 0.20948184 prediction 0.590793765852775 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161139754 chr6:161139758 nonsynonymous SNV 0.756 1 25 hm5C_associated_SNPs_102278 0 0 0 0 1 PLG chr6:161139725 3'AG 161139725 Downstream 34bp
chr18 43405725 43405725 1 + T G rs139939061 43405723 + 43405703 43405743 41 TCCATCTGGCTGCTGGCCTGCTTGGCGTGGGTTCTCCCGAC TCCATCTGGCTGCTGGCCTGCTGGGCGTGGGTTCTCCCGAC < 41bp 0.46888732161695 0.795394075976053 0.32588077 0.83073056 prediction 0.590788151952105 Functional Gain - SIGLEC15 ENSG00000197046 CDS Human protein_coding chr18:43405723 chr18:43405725 nonsynonymous SNV 0.594 2 23 hm5C_associated_SNPs_102279 0 0 0 0 1 SIGLEC15 chr18:43405745 5'GT 43405745 Upstream 21bp
chr9 90497878 90497878 1 + C G STAD 90497877 + 90497857 90497897 41 GAGTGGGCAGAGGATTCCACCCCCAGCTCCCAGACCATCTG GAGTGGGCAGAGGATTCCACCGCCAGCTCCCAGACCATCTG < 41bp 0.504146486503549 0.799527791606685 0.13834104 0.61542785 prediction 0.590762610206271 Functional Gain - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90497877 chr9:90497878 synonymous SNV . 0 22 hm5C_associated_SNPs_102281 0 0 0 0 1 SPATA31E1 chr9:90497901 5'GT 90497901 Upstream 24bp
chr16 1392790 1392790 1 + T A LUAD 1392786 + 1392766 1392806 41 ACCTGCTGCTGCTCAGCCATCTGCTGCGGTTGGAGCACTCA ACCTGCTGCTGCTCAGCCATCTGCAGCGGTTGGAGCACTCA < 41bp 0.480370472726677 0.795357735957964 0.41522172 0.41038564 prediction 0.590715471915928 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1392786 chr16:1392790 nonsynonymous SNV 0.644 2 25 hm5C_associated_SNPs_102285 0 0 0 0 2 BAIAP3 chr16:1392720 3'AG 1392720 Downstream 71bp
chr16 1392790 1392790 1 + T A LUAD 1392786 + 1392766 1392806 41 ACCTGCTGCTGCTCAGCCATCTGCTGCGGTTGGAGCACTCA ACCTGCTGCTGCTCAGCCATCTGCAGCGGTTGGAGCACTCA < 41bp 0.480370472726677 0.795357735957964 0.41522172 0.41038564 prediction 0.590715471915928 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1392786 chr16:1392790 nonsynonymous SNV 0.644 2 25 hm5C_associated_SNPs_102285 0 0 0 0 2 BAIAP3 chr16:1392815 5'GT 1392815 Upstream 26bp
chr18 32455254 32455254 1 + C A LUAD 32455250 + 32455230 32455270 41 TCCCCCAGCCACACCATCAGCAGGCCAATTCCCATGCCCAT TCCCCCAGCCACACCATCAGCAGGACAATTCCCATGCCCAT < 41bp 0.535611382770274 0.830964655992734 0.9213624 0.9201155 prediction 0.59070654644492 Functional Gain - DTNA ENSG00000134769 CDS Human protein_coding chr18:32455250 chr18:32455254 nonsynonymous SNV 0.994 3 25 hm5C_associated_SNPs_102286 0 0 0 0 1 DTNA chr18:32455203 3'AG 32455203 Downstream 52bp
chr16 22926316 22926316 1 + C A LUAD 22926312 + 22926292 22926332 41 CCAGATCACGCTGGAGAAGACGCCCAGCTACTTTGTCACTC CCAGATCACGCTGGAGAAGACGCCAAGCTACTTTGTCACTC < 41bp 0.612776386014402 0.908114289747633 0.27141255 0.7406411 prediction 0.590675807466461 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926312 chr16:22926316 synonymous SNV . 0 25 hm5C_associated_SNPs_102288 0 0 0 1 1 HS3ST2 chr16:22926265 3'AG 22926265 Downstream 52bp
chr1 151079598 151079598 1 + C G KIRC 151079597 + 151079577 151079617 41 TGGAGGCCAGAGGGTCATCACCATAGTGACTGATGGAGTCC TGGAGGCCAGAGGGTCATCACGATAGTGACTGATGGAGTCC < 41bp 0.513089832603178 0.808420385865803 0.25585184 0.3615239 prediction 0.59066110652525 Functional Gain - GABPB2 ENSG00000143458 CDS Human protein_coding chr1:151079597 chr1:151079598 synonymous SNV . 0 22 hm5C_associated_SNPs_102289 0 0 1 0 1 GABPB2 chr1:151079513 3'AG 151079513 Downstream 86bp
chr2 79255031 79255031 1 + C A LUAD 79255027 + 79255007 79255047 41 TCCCTCCACCATCTTAAACCCTGGCCACTGTGGGAGCCTGT TCCCTCCACCATCTTAAACCCTGGACACTGTGGGAGCCTGT < 41bp 0.398493098561036 0.795322938442722 0.14566109 0.32980245 prediction 0.590645876885444 Functional Gain - REG3G ENSG00000143954 CDS Human protein_coding chr2:79255027 chr2:79255031 synonymous SNV . 0 25 hm5C_associated_SNPs_102290 0 0 0 0 2 REG3G chr2:79254933 3'AG 79254933 Downstream 99bp
chr2 79255031 79255031 1 + C A LUAD 79255027 + 79255007 79255047 41 TCCCTCCACCATCTTAAACCCTGGCCACTGTGGGAGCCTGT TCCCTCCACCATCTTAAACCCTGGACACTGTGGGAGCCTGT < 41bp 0.398493098561036 0.795322938442722 0.14566109 0.32980245 prediction 0.590645876885444 Functional Gain - REG3G ENSG00000143954 CDS Human protein_coding chr2:79255027 chr2:79255031 synonymous SNV . 0 25 hm5C_associated_SNPs_102290 0 0 0 0 2 REG3G chr2:79255059 5'GT 79255059 Upstream 29bp
chr17 48619249 48619249 1 + C A rs4794159 48619245 + 48619225 48619265 41 ACCAACCCGTTCGGCGCGGGCGAGCCGGGCAGGCCGACGCT ACCAACCCGTTCGGCGCGGGCGAGACGGGCAGGCCGACGCT < 41bp 0.592007907455401 0.88732530930262 0.76780117 0.8842444 prediction 0.590634803694438 Functional Gain - EPN3 ENSG00000049283 CDS Human protein_coding chr17:48619245 chr17:48619249 nonsynonymous SNV 0.790 1 25 hm5C_associated_SNPs_102291 0 0 0 0 1 EPN3 chr17:48619205 3'AG 48619205 Downstream 45bp
chr19 41597751 41597751 1 + C A rs8192789 41597747 + 41597727 41597767 41 GCCAAGAAGGTGGAGCACAACCAGCGCACGCTGGATCCCAA GCCAAGAAGGTGGAGCACAACCAGAGCACGCTGGATCCCAA < 41bp 0.398338453054551 0.795262026110867 0.25276795 0.26063657 prediction 0.590524052221734 Functional Gain - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41597747 chr19:41597751 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_102297 0 0 0 0 1 CYP2A13 chr19:41597813 5'GT 41597813 Upstream 63bp
chr19 36034606 36034606 1 + T A LUSC 36034602 + 36034582 36034622 41 GGCGTTCCGGGTACCAACCCCGGATGTGTCTGTCGTGGACC GGCGTTCCGGGTACCAACCCCGGAAGTGTCTGTCGTGGACC < 41bp 0.510303634821108 0.80553977086463 0.8914649 0.8832594 prediction 0.590472272087044 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36034602 chr19:36034606 nonsynonymous SNV 0.860 3 25 hm5C_associated_SNPs_102300 0 0 0 0 1 GAPDHS chr19:36034567 3'AG 36034567 Downstream 40bp
chrX 18912471 18912471 1 - G C LGG 18912472 - 18912452 18912492 41 CATGTCGAATCGGTGCTGAACCGCGTGCCGCAGCCCGAGTA CATGTCGAATCGGTGCTGAACGGCGTGCCGCAGCCCGAGTA < 41bp 0.491728610701965 0.795182116643684 0.3006197 0.8894352 prediction 0.590364233287367 Functional Gain - PHKA2 ENSG00000044446 CDS Human protein_coding chrX:18912472 chrX:18912471 nonsynonymous SNV 0.948 2 22 hm5C_associated_SNPs_102303 0 0 1 0 1 PHKA2 chrX:18912522 3'AG 18912522 Downstream 52bp
chr5 79817879 79817879 1 + C A UCEC 79817875 + 79817855 79817895 41 ATATATGTAATGAACTAAGTCAGCCTGTAACGTTCCCTGTC ATATATGTAATGAACTAAGTCAGCATGTAACGTTCCCTGTC < 41bp 0.394016978475963 0.79517901361219 0.39094973 0.5576993 prediction 0.59035802722438 Functional Gain - FAM151B ENSG00000152380 CDS Human protein_coding chr5:79817875 chr5:79817879 nonsynonymous SNV 0.150 3 25 hm5C_associated_SNPs_102304 0 0 0 0 1 FAM151B chr5:79817957 5'GT 79817957 Upstream 79bp
chr1 111773540 111773540 1 + C A LIHC 111773536 + 111773516 111773556 41 GACAAGAGTGAAGTGATGCTCTACCAGACCATCAACAGTCT GACAAGAGTGAAGTGATGCTCTACAAGACCATCAACAGTCT < 41bp 0.387206359191814 0.795165309812452 0.044825584 0.7536908 prediction 0.590330619624904 Functional Gain - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111773536 chr1:111773540 nonsynonymous SNV 0.237 0 25 hm5C_associated_SNPs_102305 0 0 0 0 1 CHI3L2 chr1:111773565 5'GT 111773565 Upstream 26bp
chr8 27373874 27373874 1 + C A HNSC 27373870 + 27373850 27373890 41 CCCAGGCAGGTTACCGGGTCCTAGCTATGGACATGAAAGGC CCCAGGCAGGTTACCGGGTCCTAGATATGGACATGAAAGGC < 41bp 0.379760373754009 0.795162198879494 0.07115698 0.1934909 prediction 0.590324397758987 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27373870 chr8:27373874 nonsynonymous SNV 0.800 4 25 hm5C_associated_SNPs_102306 0 0 1 0 2 EPHX2 chr8:27373837 3'AG 27373837 Downstream 38bp
chr8 27373874 27373874 1 + C A HNSC 27373870 + 27373850 27373890 41 CCCAGGCAGGTTACCGGGTCCTAGCTATGGACATGAAAGGC CCCAGGCAGGTTACCGGGTCCTAGATATGGACATGAAAGGC < 41bp 0.379760373754009 0.795162198879494 0.07115698 0.1934909 prediction 0.590324397758987 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27373870 chr8:27373874 nonsynonymous SNV 0.800 4 25 hm5C_associated_SNPs_102306 0 0 1 0 2 EPHX2 chr8:27373915 5'GT 27373915 Upstream 42bp
chr17 73269698 73269698 1 - A C rs148372053 73269700 - 73269680 73269720 41 GTACGGAGATACAAGGGCCTCATGGACTGTGCCAAGCAGGT GTACGGAGATACAAGGGCCTCAGGGACTGTGCCAAGCAGGT < 41bp 0.470098953889661 0.795152769106593 0.18944469 0.77610147 prediction 0.590305538213187 Functional Gain - SLC25A19 ENSG00000125454 CDS Human protein_coding chr17:73269700 chr17:73269698 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_102307 2 0 0 0 1 SLC25A19 chr17:73269720 3'AG 73269720 Downstream 23bp
chr15 58834025 58834025 1 + C G LUAD 58834024 + 58834004 58834044 41 CTGGATCTGGCAGATGGTGGCCGCGCTGAAGTCTCAGCCGG CTGGATCTGGCAGATGGTGGCGGCGCTGAAGTCTCAGCCGG < 41bp 0.508856801175071 0.803928034703095 0.21732354 0.86214125 prediction 0.590142467056048 Functional Gain - LIPC ENSG00000166035 CDS Human protein_coding chr15:58834024 chr15:58834025 synonymous SNV . 0 22 hm5C_associated_SNPs_102312 0 0 1 0 1 LIPC chr15:58833984 3'AG 58833984 Downstream 42bp
chr6 36260856 36260856 1 + T A LUSC 36260852 + 36260832 36260872 41 GCACAGGCCCTATACTGCAGCTGCTTCGTCCCGGTGTACTG GCACAGGCCCTATACTGCAGCTGCATCGTCCCGGTGTACTG < 41bp 0.473694091260734 0.795065978226133 0.018309683 0.026088536 prediction 0.590131956452267 Functional Gain - PNPLA1 ENSG00000180316 CDS Human protein_coding chr6:36260852 chr6:36260856 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_102313 0 0 0 0 2 PNPLA1 chr6:36260838 3'AG 36260838 Downstream 19bp
chr6 36260856 36260856 1 + T A LUSC 36260852 + 36260832 36260872 41 GCACAGGCCCTATACTGCAGCTGCTTCGTCCCGGTGTACTG GCACAGGCCCTATACTGCAGCTGCATCGTCCCGGTGTACTG < 41bp 0.473694091260734 0.795065978226133 0.018309683 0.026088536 prediction 0.590131956452267 Functional Gain - PNPLA1 ENSG00000180316 CDS Human protein_coding chr6:36260852 chr6:36260856 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_102313 0 0 0 0 2 PNPLA1 chr6:36260903 5'GT 36260903 Upstream 48bp
chr4 178243650 178243650 1 + T G UCEC 178243648 + 178243628 178243668 41 AATGATTCCAGCCAGAATGTCTTGAGCCTGTTTAATGGATA AATGATTCCAGCCAGAATGTCTGGAGCCTGTTTAATGGATA < 41bp 0.484761540789082 0.795058779037897 0.02703622 0.16577443 prediction 0.590117558075794 Functional Gain - NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178243648 chr4:178243650 nonsynonymous SNV 0.086 1 23 hm5C_associated_SNPs_102314 0 0 1 0 2 NEIL3 chr4:178243613 3'AG 178243613 Downstream 38bp
chr4 178243650 178243650 1 + T G UCEC 178243648 + 178243628 178243668 41 AATGATTCCAGCCAGAATGTCTTGAGCCTGTTTAATGGATA AATGATTCCAGCCAGAATGTCTGGAGCCTGTTTAATGGATA < 41bp 0.484761540789082 0.795058779037897 0.02703622 0.16577443 prediction 0.590117558075794 Functional Gain - NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178243648 chr4:178243650 nonsynonymous SNV 0.086 1 23 hm5C_associated_SNPs_102314 0 0 1 0 2 NEIL3 chr4:178243734 5'GT 178243734 Upstream 85bp
chr19 38817296 38817296 1 + T A HNSC 38817292 + 38817272 38817312 41 CCTTCTCCATCGCCTTTGCGCTCCTGGGCGTGCCGACCACC CCTTCTCCATCGCCTTTGCGCTCCAGGGCGTGCCGACCACC < 41bp 0.551096756929671 0.846115116481862 0.2410655 0.5949798 prediction 0.590036719104382 Functional Gain - KCNK6 ENSG00000099337 CDS Human protein_coding chr19:38817292 chr19:38817296 nonsynonymous SNV 0.874 3 25 hm5C_associated_SNPs_102319 0 0 0 0 1 KCNK6 chr19:38817233 3'AG 38817233 Downstream 64bp
chrX 130215772 130215772 1 + C G HNSC 130215771 + 130215751 130215791 41 GCCCCAGGACACAACCCCGACCGCAGGACGAAGATGGTATC GCCCCAGGACACAACCCCGACGGCAGGACGAAGATGGTATC < 41bp 0.510464465196582 0.805444805076977 0.21293363 0.329055 prediction 0.589960679760791 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130215771 chrX:130215772 nonsynonymous SNV 0.008 1 22 hm5C_associated_SNPs_102321 0 0 0 0 1 ARHGAP36 chrX:130215734 3'AG 130215734 Downstream 39bp
chr8 11414277 11414277 1 + C A LUSC 11414273 + 11414253 11414293 41 GTGATGAAGGCTCTGCAGCACGAGCGGCTGGTCCGACTCTA GTGATGAAGGCTCTGCAGCACGAGAGGCTGGTCCGACTCTA < 41bp 0.60577987717466 0.900736308736497 0.66047055 0.90188396 prediction 0.589912863123674 Functional Gain - BLK ENSG00000136573 CDS Human protein_coding chr8:11414273 chr8:11414277 synonymous SNV . 0 25 hm5C_associated_SNPs_102323 0 0 0 0 1 BLK chr8:11414346 5'GT 11414346 Upstream 70bp
chr8 36768513 36768513 1 + C A UCEC 36768509 + 36768489 36768529 41 AGAGCAATGCTCCATGTGTGCTGTCTTGTCCCCCCCACCCC AGAGCAATGCTCCATGTGTGCTGTATTGTCCCCCCCACCCC < 41bp 0.392599777816869 0.794954168729887 0.017974645 0.018695444 prediction 0.589908337459774 Functional Gain - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36768509 chr8:36768513 synonymous SNV . 0 25 hm5C_associated_SNPs_102324 0 0 0 0 1 KCNU1 chr8:36768448 3'AG 36768448 Downstream 66bp
chr8 12888698 12888698 1 + T G rs566105576 12888695 + 12888675 12888715 41 CCACGGATATTGAGGGACCACAGTATTTTTATCCTCCATGT CCACGGATATTGAGGGACCACAGGATTTTTATCCTCCATGT < 41bp 0.574726471072531 0.86966632613466 0.5130384 0.9246076 prediction 0.589879710124258 Functional Gain - KIAA1456;DLC1 ENSG00000250305 CDS Human protein_coding chr8:12888695 chr8:12888698 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_102325 0 0 0 0 1 KIAA1456;DLC1 chr8:12888623 3'AG 12888623 Downstream 76bp
chr4 48027169 48027169 1 + T A BRCA 48027165 + 48027145 48027185 41 TGTCACAGCTGCTGGCTTCTCCTGTGCTCTACACGGACCTG TGTCACAGCTGCTGGCTTCTCCTGAGCTCTACACGGACCTG < 41bp 0.505639016002248 0.800516467203785 0.22798455 0.40466517 prediction 0.589754902403073 Functional Gain - NIPAL1 ENSG00000163293 CDS Human protein_coding chr4:48027165 chr4:48027169 nonsynonymous SNV 0.315 0 25 hm5C_associated_SNPs_102329 0 0 1 0 1 NIPAL1 chr4:48027085 3'AG 48027085 Downstream 85bp
chr17 34951458 34951458 1 + T A rs143529065 34951454 + 34951434 34951474 41 CCCGGGACTTTGATCCCCTACAGATGTGACCTATCAAATGA CCCGGGACTTTGATCCCCTACAGAAGTGACCTATCAAATGA < 41bp 0.527342893068843 0.822141478593742 0.18554175 0.22429463 prediction 0.589597171049799 Functional Gain - DHRS11 ENSG00000108272 CDS Human other chr17:34951454 chr17:34951458 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_102334 0 0 1 0 1 DHRS11 chr17:34951401 3'AG 34951401 Downstream 58bp
chr11 60541401 60541401 1 + C A UCEC 60541397 + 60541377 60541417 41 TTGCCATGCACTTCGGGTGCCAAGCCATCCATGCCCAGGCC TTGCCATGCACTTCGGGTGCCAAGACATCCATGCCCAGGCC < 41bp 0.405262157644316 0.794742910112568 0.100985646 0.2962336 prediction 0.589485820225136 Functional Gain - MS4A15 ENSG00000166961 CDS Human protein_coding chr11:60541397 chr11:60541401 nonsynonymous SNV 0.284 0 25 hm5C_associated_SNPs_102339 0 0 0 0 2 MS4A15 chr11:60541310 3'AG 60541310 Downstream 92bp
chr11 60541401 60541401 1 + C A UCEC 60541397 + 60541377 60541417 41 TTGCCATGCACTTCGGGTGCCAAGCCATCCATGCCCAGGCC TTGCCATGCACTTCGGGTGCCAAGACATCCATGCCCAGGCC < 41bp 0.405262157644316 0.794742910112568 0.100985646 0.2962336 prediction 0.589485820225136 Functional Gain - MS4A15 ENSG00000166961 CDS Human protein_coding chr11:60541397 chr11:60541401 nonsynonymous SNV 0.284 0 25 hm5C_associated_SNPs_102339 0 0 0 0 2 MS4A15 chr11:60541423 5'GT 60541423 Upstream 23bp
chr2 231742247 231742247 1 + C A OV 231742243 + 231742223 231742263 41 GGGAAAGACACCTACCGGCTCCGGCGCCGGGCAACGCGGAG GGGAAAGACACCTACCGGCTCCGGAGCCGGGCAACGCGGAG < 41bp 0.407014026871941 0.79472878349228 0.3704199 0.56316656 prediction 0.58945756698456 Functional Gain - ITM2C ENSG00000135916 CDS Human protein_coding chr2:231742243 chr2:231742247 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_102340 0 0 1 0 1 ITM2C chr2:231742265 5'GT 231742265 Upstream 19bp
chr4 74702791 74702791 1 + C A GBM 74702787 + 74702767 74702807 41 CTGCAGGTGTTCCCCGCAGGCCCGCAGTGCTCCAAGGTGGA CTGCAGGTGTTCCCCGCAGGCCCGAAGTGCTCCAAGGTGGA < 41bp 0.393986533669753 0.79468465583761 0.06963536 0.1044898 prediction 0.589369311675221 Functional Gain - CXCL6 ENSG00000124875 CDS Human protein_coding chr4:74702787 chr4:74702791 nonsynonymous SNV 0.187 1 25 hm5C_associated_SNPs_102342 0 0 0 0 1 CXCL6 chr4:74702813 5'GT 74702813 Upstream 23bp
chr7 56128554 56128554 1 + T A COAD 56128550 + 56128530 56128570 41 AAGTGGCAATGGCAGAAGCCCTGATTAAACATAAGCCCAGT AAGTGGCAATGGCAGAAGCCCTGAATAAACATAAGCCCAGT < 41bp 0.533834513156247 0.828504223158284 0.019334316 0.027995974 prediction 0.589339420004075 Functional Gain - CCT6A ENSG00000146731 CDS Human protein_coding chr7:56128550 chr7:56128554 nonsynonymous SNV 0.952 0 25 hm5C_associated_SNPs_102343 0 0 1 0 2 CCT6A chr7:56128500 3'AG 56128500 Downstream 55bp
chr7 56128554 56128554 1 + T A COAD 56128550 + 56128530 56128570 41 AAGTGGCAATGGCAGAAGCCCTGATTAAACATAAGCCCAGT AAGTGGCAATGGCAGAAGCCCTGAATAAACATAAGCCCAGT < 41bp 0.533834513156247 0.828504223158284 0.019334316 0.027995974 prediction 0.589339420004075 Functional Gain - CCT6A ENSG00000146731 CDS Human protein_coding chr7:56128550 chr7:56128554 nonsynonymous SNV 0.952 0 25 hm5C_associated_SNPs_102343 0 0 1 0 2 CCT6A chr7:56128633 5'GT 56128633 Upstream 80bp
chr12 66716532 66716532 1 + T A UCEC 66716528 + 66716508 66716548 41 GACTGTGATCTAATTAATGACTGCTGCTGCAAACACTACAC GACTGTGATCTAATTAATGACTGCAGCTGCAAACACTACAC < 41bp 0.520263268567499 0.814904962863289 0.12302905 0.14585745 prediction 0.589283388591581 Functional Gain - HELB ENSG00000127311 CDS Human protein_coding chr12:66716528 chr12:66716532 nonsynonymous SNV 0.932 4 25 hm5C_associated_SNPs_102344 0 0 0 7 2 HELB chr12:66716504 3'AG 66716504 Downstream 29bp
chr12 66716532 66716532 1 + T A UCEC 66716528 + 66716508 66716548 41 GACTGTGATCTAATTAATGACTGCTGCTGCAAACACTACAC GACTGTGATCTAATTAATGACTGCAGCTGCAAACACTACAC < 41bp 0.520263268567499 0.814904962863289 0.12302905 0.14585745 prediction 0.589283388591581 Functional Gain - HELB ENSG00000127311 CDS Human protein_coding chr12:66716528 chr12:66716532 nonsynonymous SNV 0.932 4 25 hm5C_associated_SNPs_102344 0 0 0 7 2 HELB chr12:66716563 5'GT 66716563 Upstream 32bp
chr3 158362484 158362484 1 + C A UCEC 158362480 + 158362460 158362500 41 GGGCGCGGAAGGGCCCCCGCCTCCCTAGGCTGGCAGAGGAA GGGCGCGGAAGGGCCCCCGCCTCCATAGGCTGGCAGAGGAA < 41bp 0.592516518015124 0.887118888383048 0.76323664 0.9727376 prediction 0.589204740735848 Functional Gain - GFM1 ENSG00000168827 CDS Human protein_coding chr3:158362480 chr3:158362484 nonsynonymous SNV 0.045 0 25 hm5C_associated_SNPs_102346 0 0 1 0 1 GFM1 chr3:158362504 5'GT 158362504 Upstream 21bp
chr12 132401557 132401557 1 + C A rs142271947 132401553 + 132401533 132401573 41 TTAAGGCGGCGTTTGGGACACAAGCCCCGGACCCGGGCAGC TTAAGGCGGCGTTTGGGACACAAGACCCGGACCCGGGCAGC < 41bp 0.405054279829717 0.794571179550706 0.2427313 0.5483687 prediction 0.589142359101411 Functional Gain - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132401553 chr12:132401557 nonsynonymous SNV 0.025 0 25 hm5C_associated_SNPs_102348 0 0 1 0 2 ULK1 chr12:132401498 3'AG 132401498 Downstream 60bp
chr12 132401557 132401557 1 + C A rs142271947 132401553 + 132401533 132401573 41 TTAAGGCGGCGTTTGGGACACAAGCCCCGGACCCGGGCAGC TTAAGGCGGCGTTTGGGACACAAGACCCGGACCCGGGCAGC < 41bp 0.405054279829717 0.794571179550706 0.2427313 0.5483687 prediction 0.589142359101411 Functional Gain - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132401553 chr12:132401557 nonsynonymous SNV 0.025 0 25 hm5C_associated_SNPs_102348 0 0 1 0 2 ULK1 chr12:132401607 5'GT 132401607 Upstream 51bp
chr7 2402315 2402315 1 + C A LUSC 2402311 + 2402291 2402331 41 TGGAGTACGCGTCCCCTGCCCACGCTGTGGATGCTGTGAAG TGGAGTACGCGTCCCCTGCCCACGATGTGGATGCTGTGAAG < 41bp 0.615287901716724 0.909786467122745 0.19724762 0.14485288 prediction 0.588997130812042 Functional Gain - EIF3B ENSG00000106263 CDS Human protein_coding chr7:2402311 chr7:2402315 nonsynonymous SNV 0.043 4 25 hm5C_associated_SNPs_102350 0 0 1 0 2 EIF3B chr7:2402280 3'AG 2402280 Downstream 36bp
chr7 2402315 2402315 1 + C A LUSC 2402311 + 2402291 2402331 41 TGGAGTACGCGTCCCCTGCCCACGCTGTGGATGCTGTGAAG TGGAGTACGCGTCCCCTGCCCACGATGTGGATGCTGTGAAG < 41bp 0.615287901716724 0.909786467122745 0.19724762 0.14485288 prediction 0.588997130812042 Functional Gain - EIF3B ENSG00000106263 CDS Human protein_coding chr7:2402311 chr7:2402315 nonsynonymous SNV 0.043 4 25 hm5C_associated_SNPs_102350 0 0 1 0 2 EIF3B chr7:2402399 5'GT 2402399 Upstream 85bp
chr15 23811161 23811161 1 + T G COAD 23811159 + 23811139 23811179 41 AGGCCTGAGGCCTGCCCCAGCCTCAGGAGGAGGAGCCTGGC AGGCCTGAGGCCTGCCCCAGCCGCAGGAGGAGGAGCCTGGC < 41bp 0.547895695994032 0.842367605568559 0.04119742 0.3382593 prediction 0.588943819149053 Functional Gain - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23811159 chr15:23811161 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_102355 0 0 0 0 1 MKRN3 chr15:23811234 5'GT 23811234 Upstream 74bp
chr1 86959196 86959196 1 + T G LUSC 86959193 + 86959173 86959213 41 TGCAGCCTCCCCAAATCCTTCTCTGGGATCCCAGTGGACAG TGCAGCCTCCCCAAATCCTTCTCGGGGATCCCAGTGGACAG < 41bp 0.420703916266725 0.794454738789207 0.09719923 0.044934988 prediction 0.588909477578414 Functional Gain - CLCA1 ENSG00000016490 CDS Human protein_coding chr1:86959193 chr1:86959196 nonsynonymous SNV 0.916 0 24 hm5C_associated_SNPs_102358 0 0 0 0 1 CLCA1 chr1:86959282 5'GT 86959282 Upstream 87bp
chr14 23236556 23236556 1 + T G LAML 23236553 + 23236533 23236573 41 GCTGCTGTCGCCCACACTACCTCTTCCTTGCGGCTTCCGGC GCTGCTGTCGCCCACACTACCTCGTCCTTGCGGCTTCCGGC < 41bp 0.406253400885512 0.794421213457372 0.0870789 0.14899367 prediction 0.588842426914745 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23236553 chr14:23236556 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_102359 0 0 1 9 2 OXA1L chr14:23236457 3'AG 23236457 Downstream 100bp
chr14 23236556 23236556 1 + T G LAML 23236553 + 23236533 23236573 41 GCTGCTGTCGCCCACACTACCTCTTCCTTGCGGCTTCCGGC GCTGCTGTCGCCCACACTACCTCGTCCTTGCGGCTTCCGGC < 41bp 0.406253400885512 0.794421213457372 0.0870789 0.14899367 prediction 0.588842426914745 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23236553 chr14:23236556 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_102359 0 0 1 9 2 OXA1L chr14:23236618 5'GT 23236618 Upstream 63bp
chr7 102004723 102004723 1 + C A rs803062 102004719 + 102004699 102004739 41 CTGGATTTGCCCCGTAGGCCCGGCCCGGGCCCCTCGGGAGC CTGGATTTGCCCCGTAGGCCCGGCACGGGCCCCTCGGGAGC < 41bp 0.481185952997637 0.794410989422243 0.20016727 0.34663835 prediction 0.588821978844486 Functional Gain - LOC100630923 ENSG00000239969 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:102004719 chr7:102004723 . . 0 25 hm5C_associated_SNPs_102360 0 0 1 0 1 LOC100630923 chr7:102004669 3'AG 102004669 Downstream 55bp
chr12 96356246 96356246 1 + C A UCEC 96356242 + 96356222 96356262 41 TGCCATCCTTCTGCCCACCACAGCCTACATGCTGAGGTAAG TGCCATCCTTCTGCCCACCACAGCATACATGCTGAGGTAAG < 41bp 0.390234940448774 0.794393788340227 0.40350655 0.4410223 prediction 0.588787576680455 Functional Gain - AMDHD1 ENSG00000139344 CDS Human protein_coding chr12:96356242 chr12:96356246 synonymous SNV . 0 25 hm5C_associated_SNPs_102365 0 0 0 0 1 AMDHD1 chr12:96356257 5'GT 96356257 Upstream 12bp
chr10 134884614 134884614 1 + C A UCEC 134884610 + 134884590 134884630 41 CCCGGGGCAGATGGACGTACCGGCCCATCGAGGCCCTCATC CCCGGGGCAGATGGACGTACCGGCACATCGAGGCCCTCATC < 41bp 0.455585735964071 0.794376414018639 0.4250564 0.56488395 prediction 0.588752828037278 Functional Gain - LINC01168;ADGRA1-AS1 ENSG00000197177 CDS Human protein_coding chr10:134884610 chr10:134884614 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_102367 0 0 0 0 1 LINC01168;ADGRA1-AS1 chr10:134884654 5'GT 134884654 Upstream 41bp
chr2 98330052 98330052 1 + C A rs2276645 98330048 + 98330028 98330068 41 GGAAATAGGTTAGTTTCAGACAAGCCTGCTTGCCGGAGCTC GGAAATAGGTTAGTTTCAGACAAGACTGCTTGCCGGAGCTC < 41bp 0.447279055782535 0.794275007258524 0.21547171 0.27902263 prediction 0.588550014517049 Functional Gain - ZAP70 ENSG00000115085 UTR5 Human protein_coding chr2:98330048 chr2:98330052 . . 0 25 hm5C_associated_SNPs_102370 1 0 0 0 1 ZAP70 chr2:98330137 5'GT 98330137 Upstream 86bp
chr20 55206723 55206723 1 + C A rs138104861 55206719 + 55206699 55206739 41 GAGAACCTGGGGCTCCACGACATGCCTCACCAGATGGACGA GAGAACCTGGGGCTCCACGACATGACTCACCAGATGGACGA < 41bp 0.400999112331197 0.794256303489009 0.29321784 0.39890915 prediction 0.588512606978018 Functional Gain - TFAP2C ENSG00000087510 CDS Human protein_coding chr20:55206719 chr20:55206723 nonsynonymous SNV 0.940 1 25 hm5C_associated_SNPs_102373 0 0 1 0 1 TFAP2C chr20:55206746 5'GT 55206746 Upstream 24bp
chr12 4855336 4855336 1 + C A HNSC 4855332 + 4855312 4855352 41 GTCCTTCAATCATGGGCATCCTGGCTGCTAACAGGCACTTC GTCCTTCAATCATGGGCATCCTGGATGCTAACAGGCACTTC < 41bp 0.60772203496781 0.901968880103446 0.14746585 0.33286792 prediction 0.588493690271273 Functional Gain - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4855332 chr12:4855336 nonsynonymous SNV 0.761 4 25 hm5C_associated_SNPs_102374 0 0 0 0 1 GALNT8 chr12:4855310 3'AG 4855310 Downstream 27bp
chr11 67377024 67377024 1 + T G STAD 67377022 + 67377002 67377042 41 CACAAGCTGCTGGAAGGCTGCCTGGTGGGGGGCCGGGCCAT CACAAGCTGCTGGAAGGCTGCCGGGTGGGGGGCCGGGCCAT < 41bp 0.45915035319302 0.794240242983894 0.3994481 0.82823575 prediction 0.588480485967788 Functional Gain - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67377022 chr11:67377024 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_102375 0 0 1 0 1 NDUFV1 chr11:67377106 5'GT 67377106 Upstream 83bp
chr13 31338154 31338154 1 + T A LUSC 31338150 + 31338130 31338170 41 ATGTCCGTTGCTGGCATATTCAACTATTACCTCATCTTCTT ATGTCCGTTGCTGGCATATTCAACAATTACCTCATCTTCTT < 41bp 0.517967742308146 0.812131283940488 0.074428886 0.090694964 prediction 0.588327083264683 Functional Gain - ALOX5AP ENSG00000132965 CDS Human protein_coding chr13:31338150 chr13:31338154 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_102380 0 0 0 0 1 ALOX5AP chr13:31338081 3'AG 31338081 Downstream 74bp
chr19 49129357 49129357 1 + T G rs151257086 49129355 + 49129335 49129375 41 TACAGCGGCTGCGCCCCAAACCTGAAGCCAGGCCCCGGGGT TACAGCGGCTGCGCCCCAAACCGGAAGCCAGGCCCCGGGGT < 41bp 0.470718824891392 0.7940626859513 0.18044445 0.810794 prediction 0.5881253719026 Functional Gain - SPHK2 ENSG00000063176 CDS Human protein_coding chr19:49129355 chr19:49129357 synonymous SNV . 0 23 hm5C_associated_SNPs_102385 0 0 0 0 1 SPHK2 chr19:49129325 3'AG 49129325 Downstream 33bp
chr10 13214704 13214704 1 + T G UCEC 13214702 + 13214682 13214722 41 CAACATGCTTTTCTGCGGAGCTTGATGTCCCTGCGCTACCA CAACATGCTTTTCTGCGGAGCTGGATGTCCCTGCGCTACCA < 41bp 0.550765719428131 0.8448086791274 0.13784671 0.84853065 prediction 0.58808591939854 Functional Gain - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13214702 chr10:13214704 synonymous SNV . 0 23 hm5C_associated_SNPs_102386 0 0 1 0 3 MCM10 chr10:13214625 3'AG 13214625 Downstream 80bp
chr10 13214704 13214704 1 + T G UCEC 13214702 + 13214682 13214722 41 CAACATGCTTTTCTGCGGAGCTTGATGTCCCTGCGCTACCA CAACATGCTTTTCTGCGGAGCTGGATGTCCCTGCGCTACCA < 41bp 0.550765719428131 0.8448086791274 0.13784671 0.84853065 prediction 0.58808591939854 Functional Gain - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13214702 chr10:13214704 synonymous SNV . 0 23 hm5C_associated_SNPs_102386 0 0 1 0 3 MCM10 chr10:13214628 3'AG 13214628 Downstream 77bp
chr10 13214704 13214704 1 + T G UCEC 13214702 + 13214682 13214722 41 CAACATGCTTTTCTGCGGAGCTTGATGTCCCTGCGCTACCA CAACATGCTTTTCTGCGGAGCTGGATGTCCCTGCGCTACCA < 41bp 0.550765719428131 0.8448086791274 0.13784671 0.84853065 prediction 0.58808591939854 Functional Gain - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13214702 chr10:13214704 synonymous SNV . 0 23 hm5C_associated_SNPs_102386 0 0 1 0 3 MCM10 chr10:13214765 5'GT 13214765 Upstream 62bp
chr10 45920485 45920485 1 + C G SKCM 45920484 + 45920464 45920504 41 GGCTGCAACCCTGTGTTGATCCGGCGCTGCACAGAGCTGCC GGCTGCAACCCTGTGTTGATCGGGCGCTGCACAGAGCTGCC < 41bp 0.52515440243182 0.81916747453827 0.6527815 0.90841514 prediction 0.588026144212902 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45920484 chr10:45920485 nonsynonymous SNV 0.214 1 22 hm5C_associated_SNPs_102388 0 0 1 0 2 ALOX5 chr10:45920408 3'AG 45920408 Downstream 78bp
chr10 45920485 45920485 1 + C G SKCM 45920484 + 45920464 45920504 41 GGCTGCAACCCTGTGTTGATCCGGCGCTGCACAGAGCTGCC GGCTGCAACCCTGTGTTGATCGGGCGCTGCACAGAGCTGCC < 41bp 0.52515440243182 0.81916747453827 0.6527815 0.90841514 prediction 0.588026144212902 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45920484 chr10:45920485 nonsynonymous SNV 0.214 1 22 hm5C_associated_SNPs_102388 0 0 1 0 2 ALOX5 chr10:45920580 5'GT 45920580 Upstream 96bp
chr6 170169675 170169675 1 + C G LUAD 170169674 + 170169654 170169694 41 CTGAACCATCAGGAGGGTCCCCGCATAAGAGATCATTTAAG CTGAACCATCAGGAGGGTCCCGGCATAAGAGATCATTTAAG < 41bp 0.499916411074012 0.793988541981183 0.49493662 0.8716289 prediction 0.587977083962367 Functional Gain - ERMARD ENSG00000130023 CDS Human protein_coding chr6:170169674 chr6:170169675 nonsynonymous SNV 0.501 4 22 hm5C_associated_SNPs_102392 0 0 0 0 1 ERMARD chr6:170169636 3'AG 170169636 Downstream 40bp
chrX 155239484 155239484 1 + T G UCEC 155239482 + 155239462 155239502 41 CTCCCGTGCTCTGTTCCAGACTTGGATGGGGGCCCACGGGG CTCCCGTGCTCTGTTCCAGACTGGGATGGGGGCCCACGGGG < 41bp 0.551265352287308 0.845253310141487 0.20423448 0.40649775 prediction 0.587975915708359 Functional Gain - IL9R ENSG00000124334 CDS Human protein_coding chrX:155239482 chrX:155239484 nonsynonymous SNV 0.016 4 23 hm5C_associated_SNPs_102393 0 0 0 0 1 IL9R chrX:155239481 3'AG 155239481 Downstream 4bp
chr1 183184672 183184672 1 + C A OV 183184668 + 183184648 183184688 41 GAGCCAGATGCGACCGATGTCTGCCAGGCTTCCACATGCTC GAGCCAGATGCGACCGATGTCTGCAAGGCTTCCACATGCTC < 41bp 0.372466651571161 0.793907670516432 0.076698184 0.25549865 prediction 0.587815341032864 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183184668 chr1:183184672 nonsynonymous SNV 0.989 2 25 hm5C_associated_SNPs_102399 0 0 0 0 2 LAMC2 chr1:183184588 3'AG 183184588 Downstream 85bp
chr1 183184672 183184672 1 + C A OV 183184668 + 183184648 183184688 41 GAGCCAGATGCGACCGATGTCTGCCAGGCTTCCACATGCTC GAGCCAGATGCGACCGATGTCTGCAAGGCTTCCACATGCTC < 41bp 0.372466651571161 0.793907670516432 0.076698184 0.25549865 prediction 0.587815341032864 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183184668 chr1:183184672 nonsynonymous SNV 0.989 2 25 hm5C_associated_SNPs_102399 0 0 0 0 2 LAMC2 chr1:183184723 5'GT 183184723 Upstream 52bp
chr1 246923314 246923314 1 + T A LUSC 246923310 + 246923290 246923330 41 GCATCACCTCTGTTATTAAGCTGATGTTTGCAGGACTTTTC GCATCACCTCTGTTATTAAGCTGAAGTTTGCAGGACTTTTC < 41bp 0.482928222366305 0.793906048693105 0.2699435 0.25030184 prediction 0.58781209738621 Functional Gain - SCCPDH ENSG00000143653 CDS Human protein_coding chr1:246923310 chr1:246923314 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_102400 0 0 1 0 2 SCCPDH chr1:246923259 3'AG 246923259 Downstream 56bp
chr1 246923314 246923314 1 + T A LUSC 246923310 + 246923290 246923330 41 GCATCACCTCTGTTATTAAGCTGATGTTTGCAGGACTTTTC GCATCACCTCTGTTATTAAGCTGAAGTTTGCAGGACTTTTC < 41bp 0.482928222366305 0.793906048693105 0.2699435 0.25030184 prediction 0.58781209738621 Functional Gain - SCCPDH ENSG00000143653 CDS Human protein_coding chr1:246923310 chr1:246923314 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_102400 0 0 1 0 2 SCCPDH chr1:246923378 5'GT 246923378 Upstream 65bp
chr7 89791386 89791386 1 + T G UCEC 89791383 + 89791363 89791403 41 TTGACATGGAGAGAATTTCACTATATTCAGGTAAATAATAT TTGACATGGAGAGAATTTCACTAGATTCAGGTAAATAATAT < 41bp 0.457432405494213 0.793896526387912 0.32799327 0.26405212 prediction 0.587793052775823 Functional Gain - STEAP1 ENSG00000164647 CDS Human protein_coding chr7:89791383 chr7:89791386 stopgain 0.999 0 24 hm5C_associated_SNPs_102401 0 0 0 0 1 STEAP1 chr7:89791392 5'GT 89791392 Upstream 7bp
chr15 101438364 101438364 1 + C G SARC 101438363 + 101438343 101438383 41 TGGAGCTGGGGGGGAAGAACCCCTGCATCGTGTGTGCGGAC TGGAGCTGGGGGGGAAGAACCGCTGCATCGTGTGTGCGGAC < 41bp 0.510262034957272 0.804148474110011 0.30991834 0.48357496 prediction 0.58777287830548 Functional Gain - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101438363 chr15:101438364 nonsynonymous SNV 0.707 4 22 hm5C_associated_SNPs_102402 0 0 0 0 2 ALDH1A3 chr15:101438288 3'AG 101438288 Downstream 77bp
chr15 101438364 101438364 1 + C G SARC 101438363 + 101438343 101438383 41 TGGAGCTGGGGGGGAAGAACCCCTGCATCGTGTGTGCGGAC TGGAGCTGGGGGGGAAGAACCGCTGCATCGTGTGTGCGGAC < 41bp 0.510262034957272 0.804148474110011 0.30991834 0.48357496 prediction 0.58777287830548 Functional Gain - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101438363 chr15:101438364 nonsynonymous SNV 0.707 4 22 hm5C_associated_SNPs_102402 0 0 0 0 2 ALDH1A3 chr15:101438390 5'GT 101438390 Upstream 27bp
chr12 111375074 111375074 1 + C A UCEC 111375070 + 111375050 111375090 41 CTGCCCAGCAGGGGGCGGTGCTACCTCGGCTCCGCGCAGCC CTGCCCAGCAGGGGGCGGTGCTACATCGGCTCCGCGCAGCC < 41bp 0.602289143651678 0.896173745427267 0.22334498 0.91327137 prediction 0.587769203551179 Functional Gain - LINC01405 ENSG00000185847 ncRNA_exonic Human lincRNA chr12:111375070 chr12:111375074 . . 0 25 hm5C_associated_SNPs_102403 0 0 0 0 1 LINC01405 chr12:111374989 3'AG 111374989 Downstream 86bp
chr7 1131069 1131069 1 + C A rs138061097 1131065 + 1131045 1131085 41 ACCCAGAGAGTGAGCAGCTCCACGCGGGACTGTGCACGGTG ACCCAGAGAGTGAGCAGCTCCACGAGGGACTGTGCACGGTG < 41bp 0.499448629349559 0.793877282253082 0.40921372 0.73188007 prediction 0.587754564506165 Functional Gain - GPER1 ENSG00000164850 UTR5 Human protein_coding chr7:1131065 chr7:1131069 . . 0 25 hm5C_associated_SNPs_102404 0 0 1 0 1 GPER1 chr7:1131043 3'AG 1131043 Downstream 27bp
chr16 57736026 57736026 1 + C A OV 57736022 + 57736002 57736042 41 TGACGCGGGAGGTGTGCCCACTCACTGTGAAGCCCAAGGAG TGACGCGGGAGGTGTGCCCACTCAATGTGAAGCCCAAGGAG < 41bp 0.376427381909685 0.793806845757513 0.19017982 0.60455805 prediction 0.587613691515025 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57736022 chr16:57736026 nonsynonymous SNV 0.755 2 25 hm5C_associated_SNPs_102408 0 0 0 0 1 DRC7 chr16:57736042 5'GT 57736042 Upstream 17bp
chr10 73115866 73115866 1 + C G LUSC 73115865 + 73115845 73115885 41 CATGGGCGGGACGGTCAGCGCCGTGGCCTCATTGGTGGACT CATGGGCGGGACGGTCAGCGCGGTGGCCTCATTGGTGGACT < 41bp 0.486800225120476 0.793786113965242 0.13223913 0.63436013 prediction 0.587572227930485 Functional Gain - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73115865 chr10:73115866 synonymous SNV . 0 22 hm5C_associated_SNPs_102409 0 0 0 0 1 SLC29A3 chr10:73115838 3'AG 73115838 Downstream 29bp
chr10 102822322 102822322 1 + C G rs201640457 102822321 + 102822301 102822341 41 TGCCCGAACGCGCTGATGCCCCGAGTGCTCGCAGGGCTTCC TGCCCGAACGCGCTGATGCCCGGAGTGCTCGCAGGGCTTCC < 41bp 0.497591737814883 0.793785632869841 0.21682575 0.8707818 prediction 0.587571265739681 Functional Gain - KAZALD1 ENSG00000107821 UTR5 Human protein_coding chr10:102822321 chr10:102822322 . . 0 22 hm5C_associated_SNPs_102410 0 0 1 0 1 KAZALD1 chr10:102822299 3'AG 102822299 Downstream 24bp
chr20 2843363 2843363 1 + C G STAD 2843362 + 2843342 2843382 41 AAGAGTCTGCTCAGGGTTGGCCTGGATGGCCGGGCCGGGGA AAGAGTCTGCTCAGGGTTGGCGTGGATGGCCGGGCCGGGGA < 41bp 0.511304132393549 0.805010082721309 0.33048248 0.5370739 prediction 0.587411900655521 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2843362 chr20:2843363 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_102414 0 0 0 0 1 VPS16 chr20:2843356 3'AG 2843356 Downstream 8bp
chr11 66190315 66190315 1 + C A LUAD 66190311 + 66190291 66190331 41 GCCCCTCTGGAGCCGAGACCCCGCCCAGGTCCTGGCCCTGG GCCCCTCTGGAGCCGAGACCCCGCACAGGTCCTGGCCCTGG < 41bp 0.377949967135798 0.793704558219254 0.10025072 0.097975165 prediction 0.587409116438509 Functional Gain - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66190311 chr11:66190315 nonsynonymous SNV 0.992 1 25 hm5C_associated_SNPs_102415 0 0 0 0 1 NPAS4 chr11:66190412 5'GT 66190412 Upstream 98bp
chr6 45480048 45480048 1 + C G LUAD 45480047 + 45480027 45480067 41 TCTTACCCCTCCTACCTGAGCCAGATGACGTCCCCGTCCAT TCTTACCCCTCCTACCTGAGCGAGATGACGTCCCCGTCCAT < 41bp 0.512227039607884 0.80589383788197 0.8679604 0.8944162 prediction 0.587333596548172 Functional Gain - RUNX2 ENSG00000124813 CDS Human protein_coding chr6:45480047 chr6:45480048 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_102419 0 0 0 0 2 RUNX2 chr6:45479983 3'AG 45479983 Downstream 66bp
chr6 45480048 45480048 1 + C G LUAD 45480047 + 45480027 45480067 41 TCTTACCCCTCCTACCTGAGCCAGATGACGTCCCCGTCCAT TCTTACCCCTCCTACCTGAGCGAGATGACGTCCCCGTCCAT < 41bp 0.512227039607884 0.80589383788197 0.8679604 0.8944162 prediction 0.587333596548172 Functional Gain - RUNX2 ENSG00000124813 CDS Human protein_coding chr6:45480047 chr6:45480048 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_102419 0 0 0 0 2 RUNX2 chr6:45480144 5'GT 45480144 Upstream 97bp
chr11 1464594 1464594 1 + C A LUAD 1464590 + 1464570 1464610 41 GAAGTATGACGGCCGGAAGGCGGACGTGTGGAGCTGCGGCG GAAGTATGACGGCCGGAAGGCGGAAGTGTGGAGCTGCGGCG < 41bp 0.417694891872574 0.793659191574354 0.89721495 0.89508224 prediction 0.587318383148708 Functional Gain - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1464590 chr11:1464594 nonsynonymous SNV 0.970 2 25 hm5C_associated_SNPs_102420 0 0 0 0 2 BRSK2 chr11:1464565 3'AG 1464565 Downstream 30bp
chr11 1464594 1464594 1 + C A LUAD 1464590 + 1464570 1464610 41 GAAGTATGACGGCCGGAAGGCGGACGTGTGGAGCTGCGGCG GAAGTATGACGGCCGGAAGGCGGAAGTGTGGAGCTGCGGCG < 41bp 0.417694891872574 0.793659191574354 0.89721495 0.89508224 prediction 0.587318383148708 Functional Gain - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1464590 chr11:1464594 nonsynonymous SNV 0.970 2 25 hm5C_associated_SNPs_102420 0 0 0 0 2 BRSK2 chr11:1464633 5'GT 1464633 Upstream 40bp
chr5 180374646 180374646 1 + T G SKCM 180374644 + 180374624 180374664 41 GTGTAAGCGAGAGAGAGAAGCATGGGCCGGTGCCTTATTCA GTGTAAGCGAGAGAGAGAAGCAGGGGCCGGTGCCTTATTCA < 41bp 0.56904466008139 0.86264312892604 0.17772636 0.9185035 prediction 0.5871969376893 Functional Gain - BTNL8 ENSG00000113303 CDS Human protein_coding chr5:180374644 chr5:180374646 nonsynonymous SNV 0.097 0 23 hm5C_associated_SNPs_102423 0 0 0 0 1 BTNL8 chr5:180374625 3'AG 180374625 Downstream 22bp
chr1 16380202 16380202 1 + T G BLCA 16380199 + 16380179 16380219 41 CACACTGGCCAAGGACATGCCACTGGAGGAGGTGGTCAAGG CACACTGGCCAAGGACATGCCACGGGAGGAGGTGGTCAAGG < 41bp 0.4008366239645 0.793589389532323 0.11348683 0.2531049 prediction 0.587178779064645 Functional Gain - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16380199 chr1:16380202 nonsynonymous SNV 0.837 4 24 hm5C_associated_SNPs_102424 0 0 0 0 1 CLCNKB chr1:16380134 3'AG 16380134 Downstream 69bp
chr10 19896799 19896799 1 + T G rs16919148 19896797 + 19896777 19896817 41 TGTGATGGTTTTGCCGACTGCATGGATTTCCAGCTTGATGA TGTGATGGTTTTGCCGACTGCAGGGATTTCCAGCTTGATGA < 41bp 0.554638311093471 0.848224674067306 0.10464534 0.72088516 prediction 0.58717272594767 Functional Gain - MALRD1 ENSG00000204740 CDS Human protein_coding chr10:19896797 chr10:19896799 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_102425 0 0 1 0 1 MALRD1 chr10:19896706 3'AG 19896706 Downstream 94bp
chr8 27528508 27528508 1 + C A SKCM 27528504 + 27528484 27528524 41 CAGAGGCCCGAAAGGAGACCCCGGCAGCTTGGGCCCCCTGG CAGAGGCCCGAAAGGAGACCCCGGAAGCTTGGGCCCCCTGG < 41bp 0.425045885021059 0.793579592392368 0.3123545 0.7056301 prediction 0.587159184784736 Functional Gain - SCARA3 ENSG00000168077 CDS Human protein_coding chr8:27528504 chr8:27528508 synonymous SNV . 0 25 hm5C_associated_SNPs_102426 0 0 1 0 1 SCARA3 chr8:27528417 3'AG 27528417 Downstream 92bp
chr4 40351384 40351384 1 + T A LUAD 40351380 + 40351360 40351400 41 TGTTGGCCATGACTGTATTTCAGCTAATGGTGGCAGAAATC TGTTGGCCATGACTGTATTTCAGCAAATGGTGGCAGAAATC < 41bp 0.523556138538897 0.817128707833355 0.24847564 0.23210526 prediction 0.587145138588917 Functional Gain - CHRNA9 ENSG00000174343 CDS Human protein_coding chr4:40351380 chr4:40351384 nonsynonymous SNV 0.986 5 25 hm5C_associated_SNPs_102428 0 0 0 0 1 CHRNA9 chr4:40351431 5'GT 40351431 Upstream 48bp
chr19 852341 852341 1 + C A LUAD 852337 + 852317 852357 41 CCCAGCCCCACCATGACCCTCGGCCGCCGACTCGCGTGTCT CCCAGCCCCACCATGACCCTCGGCAGCCGACTCGCGTGTCT < 41bp 0.575614442241302 0.86914472504161 0.8925706 0.904309 prediction 0.587060565600614 Functional Gain - ELANE ENSG00000197561 CDS Human protein_coding chr19:852337 chr19:852341 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_102430 0 0 0 0 1 ELANE chr19:852395 5'GT 852395 Upstream 55bp
chr19 41703800 41703800 1 + C G rs577627773 41703799 + 41703779 41703819 41 GAGCTGATCCAGGCGGAGGCCCGGTGTCTGGTGGAGACATT GAGCTGATCCAGGCGGAGGCCGGGTGTCTGGTGGAGACATT < 41bp 0.495038197751963 0.793507381389961 0.8457366 0.89432734 prediction 0.587014762779922 Functional Gain - CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41703799 chr19:41703800 nonsynonymous SNV 0.159 0 22 hm5C_associated_SNPs_102433 0 0 0 0 1 CYP2S1 chr19:41703833 5'GT 41703833 Upstream 34bp
chr12 8673727 8673727 1 + C A SARC 8673723 + 8673703 8673743 41 TGTTGTTGTTCTTTCAGATTCTGGCATAAGAATGAACCCGA TGTTGTTGTTCTTTCAGATTCTGGAATAAGAATGAACCCGA < 41bp 0.589418635860917 0.882923265539522 0.231089 0.30105442 prediction 0.58700925935721 Functional Gain - CLEC4D ENSG00000166527 CDS Human protein_coding chr12:8673723 chr12:8673727 nonsynonymous SNV 0.151 1 25 hm5C_associated_SNPs_102434 0 0 0 0 1 CLEC4D chr12:8673720 3'AG 8673720 Downstream 8bp
chr22 39382006 39382006 1 + C A rs144579352 39382002 + 39381982 39382022 41 GTCACCCTGACCATCTCTGCCGCCCGCCTCTACTACTACTG GTCACCCTGACCATCTCTGCCGCCAGCCTCTACTACTACTG < 41bp 0.379424498386129 0.793481352519911 0.040759176 0.28713822 prediction 0.586962705039822 Functional Gain - APOBEC3B ENSG00000179750 CDS Human protein_coding chr22:39382002 chr22:39382006 nonsynonymous SNV 0.115 3 25 hm5C_associated_SNPs_102435 0 0 1 0 1 APOBEC3B chr22:39382096 5'GT 39382096 Upstream 91bp
chr4 187086562 187086562 1 + C A rs61155675 187086558 + 187086538 187086578 41 ACGTCACGGAGCAGGTTCCCCCCGCTAGTCACGGAGACCAG ACGTCACGGAGCAGGTTCCCCCCGATAGTCACGGAGACCAG < 41bp 0.38313823209968 0.793459484781997 0.1682823 0.12277073 prediction 0.586918969563994 Functional Gain - FAM149A ENSG00000109794 CDS Human protein_coding chr4:187086558 chr4:187086562 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_102436 0 0 0 0 2 FAM149A chr4:187086498 3'AG 187086498 Downstream 65bp
chr4 187086562 187086562 1 + C A rs61155675 187086558 + 187086538 187086578 41 ACGTCACGGAGCAGGTTCCCCCCGCTAGTCACGGAGACCAG ACGTCACGGAGCAGGTTCCCCCCGATAGTCACGGAGACCAG < 41bp 0.38313823209968 0.793459484781997 0.1682823 0.12277073 prediction 0.586918969563994 Functional Gain - FAM149A ENSG00000109794 CDS Human protein_coding chr4:187086558 chr4:187086562 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_102436 0 0 0 0 2 FAM149A chr4:187086618 5'GT 187086618 Upstream 57bp
chr19 49535816 49535816 1 + C G rs576183783 49535815 + 49535795 49535835 41 GGACATGGGCATCCAAGGAGCCGCTTCGGCCACGGTGCCGC GGACATGGGCATCCAAGGAGCGGCTTCGGCCACGGTGCCGC < 41bp 0.507621066431693 0.801069298791511 0.15170997 0.46456403 prediction 0.586896464719637 Functional Gain - CGB2 ENSG00000104818 CDS Human protein_coding chr19:49535815 chr19:49535816 nonsynonymous SNV 0.001 3 22 hm5C_associated_SNPs_102437 0 0 0 0 1 CGB2 chr19:49535761 3'AG 49535761 Downstream 56bp
chr18 59217289 59217289 1 + T A LUSC 59217285 + 59217265 59217305 41 GTGTCTTTCACCTGCCTATCCTGATAGCAGATAGCGGGCAG GTGTCTTTCACCTGCCTATCCTGAAAGCAGATAGCGGGCAG < 41bp 0.54139425551814 0.834639465382855 0.4111998 0.33257055 prediction 0.586490419729431 Functional Gain - CDH20 ENSG00000101542 CDS Human protein_coding chr18:59217285 chr18:59217289 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102444 0 0 0 0 1 CDH20 chr18:59217211 3'AG 59217211 Downstream 79bp
chr13 45953337 45953337 1 + T G rs531109288 45953334 + 45953314 45953354 41 TGCCTTCTGCCCTTAGGCTCCGGTAGATTGCAAATGACCTG TGCCTTCTGCCCTTAGGCTCCGGGAGATTGCAAATGACCTG < 41bp 0.44434129399229 0.793235166383835 0.33638197 0.79347146 prediction 0.58647033276767 Functional Gain - TPT1-AS1 ENSG00000170919 ncRNA_exonic Human processed_transcript chr13:45953334 chr13:45953337 . . 0 24 hm5C_associated_SNPs_102445 0 0 0 0 1 TPT1-AS1 chr13:45953330 3'AG 45953330 Downstream 8bp
chr2 85133174 85133174 1 + C G LUAD 85133173 + 85133153 85133193 41 ACCAGACATGGGGGAAATCGCCAGCTTCGATAAGGCCAAGC ACCAGACATGGGGGAAATCGCGAGCTTCGATAAGGCCAAGC < 41bp 0.497762345564675 0.793194378942918 0.8892824 0.89726543 prediction 0.586388757885835 Functional Gain - TMSB10 ENSG00000034510 CDS Human protein_coding chr2:85133173 chr2:85133174 synonymous SNV . 0 22 hm5C_associated_SNPs_102447 0 0 1 0 1 TMSB10 chr2:85133127 3'AG 85133127 Downstream 48bp
chr3 52823817 52823817 1 + C A CESC 52823813 + 52823793 52823833 41 TCAGAACATTACGCTGAACCCCGGCTTTGGTGGGCCTGTGT TCAGAACATTACGCTGAACCCCGGATTTGGTGGGCCTGTGT < 41bp 0.398728521627783 0.793191483084172 0.7387667 0.8544792 prediction 0.586382966168344 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52823813 chr3:52823817 synonymous SNV . 0 25 hm5C_associated_SNPs_102450 0 0 1 0 1 ITIH1 chr3:52823870 5'GT 52823870 Upstream 54bp
chr16 70512234 70512234 1 + C A rs17881635 70512230 + 70512210 70512250 41 CCTGGCATCAAGGTGGGGCGCTCCCGGGCTCAGCTGCCACT CCTGGCATCAAGGTGGGGCGCTCCAGGGCTCAGCTGCCACT < 41bp 0.367420528664262 0.793172429818312 0.08222094 0.8416798 prediction 0.586344859636623 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70512230 chr16:70512234 synonymous SNV . 0 25 hm5C_associated_SNPs_102453 0 0 0 0 1 FUK chr16:70512175 3'AG 70512175 Downstream 60bp
chr4 1347132 1347132 1 + C A STAD 1347128 + 1347108 1347148 41 TCAGATGAGGACGAGGACAGCGACCTCGAGGAGTTTGTGCG TCAGATGAGGACGAGGACAGCGACATCGAGGAGTTTGTGCG < 41bp 0.383375612808652 0.793172117423687 0.095333606 0.11158189 prediction 0.586344234847374 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1347128 chr4:1347132 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_102454 0 0 1 0 1 UVSSA chr4:1347201 5'GT 1347201 Upstream 70bp
chr3 121591442 121591442 1 + T A LUAD 121591438 + 121591418 121591458 41 GAGTAGTTGTGATAGTTCATCAGATTCCAAAAGTTCATCAT GAGTAGTTGTGATAGTTCATCAGAATCCAAAAGTTCATCAT < 41bp 0.505196703352172 0.798297906203054 0.45110795 0.33775228 prediction 0.586202405701763 Functional Gain - EAF2 ENSG00000145088 CDS Human protein_coding chr3:121591438 chr3:121591442 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_102457 0 0 1 0 1 EAF2 chr3:121591384 3'AG 121591384 Downstream 59bp
chr3 16217180 16217180 1 + C G rs142412711 16217179 + 16217159 16217199 41 CCCCCTCCAGAGGGCTCTGCCCGAGGTGCGGCACCCACTGT CCCCCTCCAGAGGGCTCTGCCGGAGGTGCGGCACCCACTGT < 41bp 0.498608950006454 0.793079533962107 0.83605576 0.9356952 prediction 0.586159067924213 Functional Gain - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16217179 chr3:16217180 synonymous SNV . 0 22 hm5C_associated_SNPs_102459 0 0 0 0 1 GALNT15 chr3:16217197 5'GT 16217197 Upstream 18bp
chr1 119683328 119683328 1 + C A UCEC 119683324 + 119683304 119683344 41 TCTGTTCAGAGAGCCAATCCCAGTCTCGCGACTCCTGCTTG TCTGTTCAGAGAGCCAATCCCAGTATCGCGACTCCTGCTTG < 41bp 0.438911217809848 0.79307685509568 0.27439135 0.22373557 prediction 0.586153710191359 Functional Gain - LOC101929147 ENSG00000231365 ncRNA_exonic Human antisense chr1:119683324 chr1:119683328 . . 0 25 hm5C_associated_SNPs_102461 0 0 1 0 1 LOC101929147 chr1:119683416 5'GT 119683416 Upstream 89bp
chr3 50252876 50252876 1 + T A BLCA 50252872 + 50252852 50252892 41 TACTCCATCCACCTGCTACTCAAGTCCTCAGGGGTCGTGGG TACTCCATCCACCTGCTACTCAAGACCTCAGGGGTCGTGGG < 41bp 0.486699499954598 0.793054529224199 0.93999803 0.9426323 prediction 0.586109058448397 Functional Gain - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50252872 chr3:50252876 . 1.000 1 25 hm5C_associated_SNPs_102463 0 0 1 0 2 SLC38A3 chr3:50252818 3'AG 50252818 Downstream 59bp
chr3 50252876 50252876 1 + T A BLCA 50252872 + 50252852 50252892 41 TACTCCATCCACCTGCTACTCAAGTCCTCAGGGGTCGTGGG TACTCCATCCACCTGCTACTCAAGACCTCAGGGGTCGTGGG < 41bp 0.486699499954598 0.793054529224199 0.93999803 0.9426323 prediction 0.586109058448397 Functional Gain - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50252872 chr3:50252876 . 1.000 1 25 hm5C_associated_SNPs_102463 0 0 1 0 2 SLC38A3 chr3:50252891 5'GT 50252891 Upstream 16bp
chr8 99019788 99019788 1 + C G LUAD 99019787 + 99019767 99019807 41 GATCCTTTGCCTGTCAGTGTCCTGAGGGACACGTGCTCCGC GATCCTTTGCCTGTCAGTGTCGTGAGGGACACGTGCTCCGC < 41bp 0.525638043889595 0.818675299841834 0.36260307 0.88545984 prediction 0.586074511904477 Functional Gain - MATN2 ENSG00000132561 CDS Human protein_coding chr8:99019787 chr8:99019788 nonsynonymous SNV 0.400 0 22 hm5C_associated_SNPs_102466 0 0 0 0 2 MATN2 chr8:99019707 3'AG 99019707 Downstream 82bp
chr8 99019788 99019788 1 + C G LUAD 99019787 + 99019767 99019807 41 GATCCTTTGCCTGTCAGTGTCCTGAGGGACACGTGCTCCGC GATCCTTTGCCTGTCAGTGTCGTGAGGGACACGTGCTCCGC < 41bp 0.525638043889595 0.818675299841834 0.36260307 0.88545984 prediction 0.586074511904477 Functional Gain - MATN2 ENSG00000132561 CDS Human protein_coding chr8:99019787 chr8:99019788 nonsynonymous SNV 0.400 0 22 hm5C_associated_SNPs_102466 0 0 0 0 2 MATN2 chr8:99019829 5'GT 99019829 Upstream 42bp
chr11 107799426 107799426 1 + C A rs77818165 107799422 + 107799402 107799442 41 GCGCTCCCCCGCCTGCGACCCCACCGTCGGCGTGGACTTCT GCGCTCCCCCGCCTGCGACCCCACAGTCGGCGTGGACTTCT < 41bp 0.410457884205548 0.793015784794926 0.016470194 0.0071148872 prediction 0.586031569589853 Functional Gain - RAB39A ENSG00000179331 CDS Human protein_coding chr11:107799422 chr11:107799426 synonymous SNV . 0 25 hm5C_associated_SNPs_102467 0 0 0 0 1 RAB39A chr11:107799521 5'GT 107799521 Upstream 96bp
chr8 43053093 43053093 1 + C G OV 43053092 + 43053072 43053112 41 CAGGAACCCCATTCTTTTATCCAGGTAAGTCACCTCCAACC CAGGAACCCCATTCTTTTATCGAGGTAAGTCACCTCCAACC < 41bp 0.514577844614678 0.807587770270339 0.9152287 0.93893397 prediction 0.586019851311324 Functional Gain - HGSNAT ENSG00000165102 CDS Human protein_coding chr8:43053092 chr8:43053093 nonsynonymous SNV 0.979 2 22 hm5C_associated_SNPs_102468 0 0 0 0 1 HGSNAT chr8:43053095 5'GT 43053095 Upstream 3bp
chr13 111938519 111938519 1 + T G OV 111938517 + 111938497 111938537 41 CTTAGTAAGAGCCCTAAGACCATGAAAAAGCTGCTGCCCAA CTTAGTAAGAGCCCTAAGACCAGGAAAAAGCTGCTGCCCAA < 41bp 0.529742970892405 0.822745279442735 0.41729537 0.8901528 prediction 0.58600461710066 Functional Gain - ARHGEF7 ENSG00000102606 CDS Human protein_coding chr13:111938517 chr13:111938519 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_102469 0 0 1 0 2 ARHGEF7 chr13:111938494 3'AG 111938494 Downstream 26bp
chr13 111938519 111938519 1 + T G OV 111938517 + 111938497 111938537 41 CTTAGTAAGAGCCCTAAGACCATGAAAAAGCTGCTGCCCAA CTTAGTAAGAGCCCTAAGACCAGGAAAAAGCTGCTGCCCAA < 41bp 0.529742970892405 0.822745279442735 0.41729537 0.8901528 prediction 0.58600461710066 Functional Gain - ARHGEF7 ENSG00000102606 CDS Human protein_coding chr13:111938517 chr13:111938519 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_102469 0 0 1 0 2 ARHGEF7 chr13:111938587 5'GT 111938587 Upstream 69bp
chr16 15123847 15123847 1 + C A COAD 15123843 + 15123823 15123863 41 AAGCAGCTGGTGCCTGCAAGCGGCCTCACAGTCATGGATCT AAGCAGCTGGTGCCTGCAAGCGGCATCACAGTCATGGATCT < 41bp 0.607843238358269 0.900829059758873 0.52462727 0.5500053 prediction 0.585971642801207 Functional Gain - PDXDC1 ENSG00000179889 CDS Human protein_coding chr16:15123843 chr16:15123847 nonsynonymous SNV 0.835 0 25 hm5C_associated_SNPs_102470 0 0 1 0 2 PDXDC1 chr16:15123808 3'AG 15123808 Downstream 40bp
chr16 15123847 15123847 1 + C A COAD 15123843 + 15123823 15123863 41 AAGCAGCTGGTGCCTGCAAGCGGCCTCACAGTCATGGATCT AAGCAGCTGGTGCCTGCAAGCGGCATCACAGTCATGGATCT < 41bp 0.607843238358269 0.900829059758873 0.52462727 0.5500053 prediction 0.585971642801207 Functional Gain - PDXDC1 ENSG00000179889 CDS Human protein_coding chr16:15123843 chr16:15123847 nonsynonymous SNV 0.835 0 25 hm5C_associated_SNPs_102470 0 0 1 0 2 PDXDC1 chr16:15123913 5'GT 15123913 Upstream 67bp
chr16 84883114 84883114 1 + C A UCEC 84883110 + 84883090 84883130 41 GTGCTCGGGGCCCATGTGCACGCACTACACACAGGTAACTC GTGCTCGGGGCCCATGTGCACGCAATACACACAGGTAACTC < 41bp 0.391857028684183 0.792904546645328 0.20613852 0.22375739 prediction 0.585809093290655 Functional Gain - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84883110 chr16:84883114 nonsynonymous SNV 0.990 4 25 hm5C_associated_SNPs_102474 0 0 0 0 1 CRISPLD2 chr16:84883123 5'GT 84883123 Upstream 10bp
chr16 84883063 84883063 1 + C A rs138500867 84883059 + 84883039 84883079 41 GGACTACACCTACCCCTACCCGAGCGAGTGCAACCCCTGGT GGACTACACCTACCCCTACCCGAGAGAGTGCAACCCCTGGT < 41bp 0.609921984644414 0.902754663690483 0.89970815 0.9049618 prediction 0.585665358092137 Functional Gain - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84883059 chr16:84883063 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_102479 0 0 0 0 2 CRISPLD2 chr16:84882991 3'AG 84882991 Downstream 73bp
chr16 84883063 84883063 1 + C A rs138500867 84883059 + 84883039 84883079 41 GGACTACACCTACCCCTACCCGAGCGAGTGCAACCCCTGGT GGACTACACCTACCCCTACCCGAGAGAGTGCAACCCCTGGT < 41bp 0.609921984644414 0.902754663690483 0.89970815 0.9049618 prediction 0.585665358092137 Functional Gain - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84883059 chr16:84883063 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_102479 0 0 0 0 2 CRISPLD2 chr16:84883123 5'GT 84883123 Upstream 61bp
chr14 90499491 90499491 1 + C A GBM 90499487 + 90499467 90499507 41 AGTGAAACAGAAGTTCTTCGCTGGCAGCCAGGAGCCAATGG AGTGAAACAGAAGTTCTTCGCTGGAAGCCAGGAGCCAATGG < 41bp 0.607381634121973 0.900197354433558 0.08664334 0.21238804 prediction 0.58563144062317 Functional Gain - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90499487 chr14:90499491 nonsynonymous SNV 0.043 1 25 hm5C_associated_SNPs_102480 0 0 1 0 1 TDP1 chr14:90499558 5'GT 90499558 Upstream 68bp
chr5 1244761 1244761 1 + C A UCEC 1244757 + 1244737 1244777 41 TTGCGTGGATGACCGGGAGGCGGCCCAGCCCCTACTGGCGG TTGCGTGGATGACCGGGAGGCGGCACAGCCCCTACTGGCGG < 41bp 0.40484135374881 0.792809417929463 0.5483193 0.66516566 prediction 0.585618835858926 Functional Gain - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1244757 chr5:1244761 nonsynonymous SNV 0.003 4 25 hm5C_associated_SNPs_102481 0 0 0 0 1 SLC6A18 chr5:1244723 3'AG 1244723 Downstream 39bp
chr2 133403777 133403777 1 - G C CESC 133403778 - 133403758 133403798 41 CGGGTACCAGTCCTTCTGCTCCCCAGGGAAACTGAACTCAG CGGGTACCAGTCCTTCTGCTCGCCAGGGAAACTGAACTCAG < 41bp 0.497352550160661 0.792794276443055 0.24226353 0.41254276 prediction 0.585588552886109 Functional Gain - LYPD1 ENSG00000150551 CDS Human protein_coding chr2:133403778 chr2:133403777 synonymous SNV . 0 22 hm5C_associated_SNPs_102482 0 0 1 0 1 LYPD1 chr2:133403853 3'AG 133403853 Downstream 77bp
chr12 6946946 6946946 1 + T A GBM 6946942 + 6946922 6946962 41 AGTCACCCAGTGCACGCAGACAACTGCGTCCTGGACCCTGA AGTCACCCAGTGCACGCAGACAACAGCGTCCTGGACCCTGA < 41bp 0.528171629583596 0.82095612143187 0.30152005 0.33233744 prediction 0.585568983696547 Functional Gain - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6946942 chr12:6946946 nonsynonymous SNV 0.974 3 25 hm5C_associated_SNPs_102483 0 0 0 0 2 P3H3 chr12:6946896 3'AG 6946896 Downstream 51bp
chr12 6946946 6946946 1 + T A GBM 6946942 + 6946922 6946962 41 AGTCACCCAGTGCACGCAGACAACTGCGTCCTGGACCCTGA AGTCACCCAGTGCACGCAGACAACAGCGTCCTGGACCCTGA < 41bp 0.528171629583596 0.82095612143187 0.30152005 0.33233744 prediction 0.585568983696547 Functional Gain - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6946942 chr12:6946946 nonsynonymous SNV 0.974 3 25 hm5C_associated_SNPs_102483 0 0 0 0 2 P3H3 chr12:6947013 5'GT 6947013 Upstream 68bp
chr4 74352727 74352727 1 + C A LUAD 74352723 + 74352703 74352743 41 AGAAGGAACCCATTTGTCTTCGCCCCTACACTTCTAACTGT AGAAGGAACCCATTTGTCTTCGCCACTACACTTCTAACTGT < 41bp 0.393051045860607 0.792759798518068 0.06941065 0.1404548 prediction 0.585519597036137 Functional Gain - AFM ENSG00000079557 CDS Human protein_coding chr4:74352723 chr4:74352727 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_102487 0 0 0 0 1 AFM chr4:74352684 3'AG 74352684 Downstream 44bp
chrX 48369802 48369802 1 + C A UCEC 48369798 + 48369778 48369818 41 CTCAGCCTCCTGTGCTACCTCGTGCTGTTCCTCTGCCGACA CTCAGCCTCCTGTGCTACCTCGTGATGTTCCTCTGCCGACA < 41bp 0.432182640105466 0.792756914396703 0.78169435 0.64957356 prediction 0.585513828793407 Functional Gain - PORCN ENSG00000102312 CDS Human protein_coding chrX:48369798 chrX:48369802 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_102488 0 0 0 0 2 PORCN chrX:48369754 3'AG 48369754 Downstream 49bp
chrX 48369802 48369802 1 + C A UCEC 48369798 + 48369778 48369818 41 CTCAGCCTCCTGTGCTACCTCGTGCTGTTCCTCTGCCGACA CTCAGCCTCCTGTGCTACCTCGTGATGTTCCTCTGCCGACA < 41bp 0.432182640105466 0.792756914396703 0.78169435 0.64957356 prediction 0.585513828793407 Functional Gain - PORCN ENSG00000102312 CDS Human protein_coding chrX:48369798 chrX:48369802 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_102488 0 0 0 0 2 PORCN chrX:48369875 5'GT 48369875 Upstream 74bp
chr20 42694471 42694471 1 + C A LUAD 42694467 + 42694447 42694487 41 GGCCTCCTTCCTGACGCCGTCGGACCTGCAGGCCTTCCGCA GGCCTCCTTCCTGACGCCGTCGGAACTGCAGGCCTTCCGCA < 41bp 0.392243512132554 0.792750694999811 0.8528986 0.88703364 prediction 0.585501389999622 Functional Gain - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42694467 chr20:42694471 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_102489 0 0 0 0 1 TOX2 chr20:42694550 5'GT 42694550 Upstream 80bp
chr10 45486510 45486510 1 + C G OV 45486509 + 45486489 45486529 41 CTGACTTGGGCGTGGAAGTCCCCCATGAAGTGAGTGGGGGC CTGACTTGGGCGTGGAAGTCCGCCATGAAGTGAGTGGGGGC < 41bp 0.505124706265811 0.797859016138143 0.16632107 0.84281915 prediction 0.585468619744665 Functional Gain - RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45486509 chr10:45486510 nonsynonymous SNV 0.319 4 22 hm5C_associated_SNPs_102492 0 0 1 0 1 RASSF4 chr10:45486517 5'GT 45486517 Upstream 8bp
chr19 37753488 37753488 1 + C A rs190472843 37753484 + 37753464 37753504 41 TCCCTGATCCCTGTTGCTCCCTGGCGGAGTTTTCTAGTCCC TCCCTGATCCCTGTTGCTCCCTGGAGGAGTTTTCTAGTCCC < 41bp 0.462850169750711 0.792719696062465 0.07397786 0.3617862 prediction 0.585439392124929 Functional Gain - LINC01535 ENSG00000226686 ncRNA_exonic Human lincRNA chr19:37753484 chr19:37753488 . . 0 25 hm5C_associated_SNPs_102493 0 0 0 0 2 LINC01535 chr19:37753444 3'AG 37753444 Downstream 45bp
chr19 37753488 37753488 1 + C A rs190472843 37753484 + 37753464 37753504 41 TCCCTGATCCCTGTTGCTCCCTGGCGGAGTTTTCTAGTCCC TCCCTGATCCCTGTTGCTCCCTGGAGGAGTTTTCTAGTCCC < 41bp 0.462850169750711 0.792719696062465 0.07397786 0.3617862 prediction 0.585439392124929 Functional Gain - LINC01535 ENSG00000226686 ncRNA_exonic Human lincRNA chr19:37753484 chr19:37753488 . . 0 25 hm5C_associated_SNPs_102493 0 0 0 0 2 LINC01535 chr19:37753557 5'GT 37753557 Upstream 70bp
chr15 41228470 41228470 1 + C A LUSC 41228466 + 41228446 41228486 41 GGTCCAAGCCGCATGTGCCGCTGCCGTCCTGGATTCACGGG GGTCCAAGCCGCATGTGCCGCTGCAGTCCTGGATTCACGGG < 41bp 0.383999481595005 0.79271601860135 0.18399063 0.13651386 prediction 0.585432037202701 Functional Gain - DLL4 ENSG00000128917 CDS Human protein_coding chr15:41228466 chr15:41228470 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_102494 0 0 0 0 1 DLL4 chr15:41228426 3'AG 41228426 Downstream 45bp
chr15 78390759 78390759 1 + C A UCEC 78390755 + 78390735 78390775 41 AATGATCTGTATGATGCCATCACCCGGGGCCTCCACCAGAC AATGATCTGTATGATGCCATCACCAGGGGCCTCCACCAGAC < 41bp 0.618004275500214 0.910714342166387 0.13615307 0.27802426 prediction 0.585420133332346 Functional Gain - SH2D7 ENSG00000183476 CDS Human protein_coding chr15:78390755 chr15:78390759 synonymous SNV . 0 25 hm5C_associated_SNPs_102495 0 0 0 0 1 SH2D7 chr15:78390726 3'AG 78390726 Downstream 34bp
chr12 113319638 113319638 1 + C G LUAD 113319637 + 113319617 113319657 41 ACGTTAAGCTGCACCTCCTGCCGGGAGCCAGCAAGGTACCA ACGTTAAGCTGCACCTCCTGCGGGGAGCCAGCAAGGTACCA < 41bp 0.507884786242504 0.800576085313766 0.2741658 0.83680546 prediction 0.585382598142525 Functional Gain - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113319637 chr12:113319638 nonsynonymous SNV 0.977 4 22 hm5C_associated_SNPs_102497 0 0 0 0 2 RPH3A chr12:113319577 3'AG 113319577 Downstream 62bp
chr12 113319638 113319638 1 + C G LUAD 113319637 + 113319617 113319657 41 ACGTTAAGCTGCACCTCCTGCCGGGAGCCAGCAAGGTACCA ACGTTAAGCTGCACCTCCTGCGGGGAGCCAGCAAGGTACCA < 41bp 0.507884786242504 0.800576085313766 0.2741658 0.83680546 prediction 0.585382598142525 Functional Gain - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113319637 chr12:113319638 nonsynonymous SNV 0.977 4 22 hm5C_associated_SNPs_102497 0 0 0 0 2 RPH3A chr12:113319651 5'GT 113319651 Upstream 14bp
chr15 98514407 98514407 1 + T G SARC 98514405 + 98514385 98514425 41 GAAGAGAGCCAGCCTGTTTCCTTCATTCTCTGAACGTATTT GAAGAGAGCCAGCCTGTTTCCTGCATTCTCTGAACGTATTT < 41bp 0.512587891301779 0.805273409809635 0.16027984 0.18080834 prediction 0.585371037015711 Functional Gain - ARRDC4 ENSG00000140450 CDS Human protein_coding chr15:98514405 chr15:98514407 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_102499 0 0 1 0 1 ARRDC4 chr15:98514361 3'AG 98514361 Downstream 47bp
chr8 121015293 121015293 1 + T A SKCM 121015289 + 121015269 121015309 41 AGCAGCTGTGGCAGCAGCGGCTACTTCAGCAGCAGCCCCAC AGCAGCTGTGGCAGCAGCGGCTACATCAGCAGCAGCCCCAC < 41bp 0.45398166990949 0.792681843644045 0.30788505 0.63871115 prediction 0.585363687288091 Functional Gain - DEPTOR ENSG00000155792 CDS Human protein_coding chr8:121015289 chr8:121015293 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_102501 0 0 0 0 2 DEPTOR chr8:121015216 3'AG 121015216 Downstream 78bp
chr8 121015293 121015293 1 + T A SKCM 121015289 + 121015269 121015309 41 AGCAGCTGTGGCAGCAGCGGCTACTTCAGCAGCAGCCCCAC AGCAGCTGTGGCAGCAGCGGCTACATCAGCAGCAGCCCCAC < 41bp 0.45398166990949 0.792681843644045 0.30788505 0.63871115 prediction 0.585363687288091 Functional Gain - DEPTOR ENSG00000155792 CDS Human protein_coding chr8:121015289 chr8:121015293 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_102501 0 0 0 0 2 DEPTOR chr8:121015350 5'GT 121015350 Upstream 58bp
chr9 96392312 96392312 1 + T G LUAD 96392309 + 96392289 96392329 41 GACATATACCACTGCCCAAACTGTGAGAAAACCCATGGGAA GACATATACCACTGCCCAAACTGGGAGAAAACCCATGGGAA < 41bp 0.404256960087474 0.792678413166807 0.13779354 0.78510386 prediction 0.585356826333614 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96392309 chr9:96392312 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_102502 0 0 1 0 3 PHF2 chr9:96392252 3'AG 96392252 Downstream 61bp
chr9 96392312 96392312 1 + T G LUAD 96392309 + 96392289 96392329 41 GACATATACCACTGCCCAAACTGTGAGAAAACCCATGGGAA GACATATACCACTGCCCAAACTGGGAGAAAACCCATGGGAA < 41bp 0.404256960087474 0.792678413166807 0.13779354 0.78510386 prediction 0.585356826333614 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96392309 chr9:96392312 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_102502 0 0 1 0 3 PHF2 chr9:96392277 3'AG 96392277 Downstream 36bp
chr9 96392312 96392312 1 + T G LUAD 96392309 + 96392289 96392329 41 GACATATACCACTGCCCAAACTGTGAGAAAACCCATGGGAA GACATATACCACTGCCCAAACTGGGAGAAAACCCATGGGAA < 41bp 0.404256960087474 0.792678413166807 0.13779354 0.78510386 prediction 0.585356826333614 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96392309 chr9:96392312 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_102502 0 0 1 0 3 PHF2 chr9:96392337 5'GT 96392337 Upstream 26bp
chr9 98229635 98229635 1 - G T CHOL 98229639 - 98229619 98229659 41 GGCACCACCCGAGTGAGAGACGGGCTGGACCTTACGGACAT GGCACCACCCGAGTGAGAGACGGGATGGACCTTACGGACAT < 41bp 0.596442937095941 0.889111927290146 0.8192295 0.8551376 prediction 0.585337980388411 Functional Gain - PTCH1 ENSG00000185920 CDS Human protein_coding chr9:98229639 chr9:98229635 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_102503 0 0 1 0 1 PTCH1 chr9:98229707 3'AG 98229707 Downstream 73bp
chr11 27114851 27114851 1 + C A BLCA 27114847 + 27114827 27114867 41 AGTAAGACTCACCGGAGCATCTGACAAACCAGGAGAAGTTT AGTAAGACTCACCGGAGCATCTGAAAAACCAGGAGAAGTTT < 41bp 0.376364535285761 0.792630836537726 0.19547868 0.21786585 prediction 0.585261673075451 Functional Gain - BBOX1 ENSG00000129151 CDS Human protein_coding chr11:27114847 chr11:27114851 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_102506 0 0 0 0 1 BBOX1 chr11:27114913 5'GT 27114913 Upstream 63bp
chr20 2293615 2293615 1 + T A LUSC 2293611 + 2293591 2293631 41 TCTGAATTTCCGCCGTGACGCTGCTACTGATGTGGCCAGCA TCTGAATTTCCGCCGTGACGCTGCAACTGATGTGGCCAGCA < 41bp 0.456990654427454 0.792594444693876 0.06939727 0.113643646 prediction 0.585188889387752 Functional Gain - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2293611 chr20:2293615 synonymous SNV . 0 25 hm5C_associated_SNPs_102507 0 0 0 0 2 TGM3 chr20:2293544 3'AG 2293544 Downstream 72bp
chr20 2293615 2293615 1 + T A LUSC 2293611 + 2293591 2293631 41 TCTGAATTTCCGCCGTGACGCTGCTACTGATGTGGCCAGCA TCTGAATTTCCGCCGTGACGCTGCAACTGATGTGGCCAGCA < 41bp 0.456990654427454 0.792594444693876 0.06939727 0.113643646 prediction 0.585188889387752 Functional Gain - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2293611 chr20:2293615 synonymous SNV . 0 25 hm5C_associated_SNPs_102507 0 0 0 0 2 TGM3 chr20:2293672 5'GT 2293672 Upstream 58bp
chr3 9803340 9803340 1 - G C LUSC 9803341 - 9803321 9803361 41 CCCGGGCAGTGTGCTCTCCACCGCCTGTGGAACTCCGGGAT CCCGGGCAGTGTGCTCTCCACGGCCTGTGGAACTCCGGGAT < 41bp 0.523359023985288 0.815945420858979 0.09273955 0.22004822 prediction 0.585172793747383 Functional Gain - CAMK1 ENSG00000134072 CDS Human protein_coding chr3:9803341 chr3:9803340 synonymous SNV . 0 22 hm5C_associated_SNPs_102508 0 0 1 0 1 CAMK1 chr3:9803315 5'GT 9803315 Upstream 26bp
chr11 64064365 64064365 1 + C G rs200879755 64064364 + 64064344 64064384 41 CTGCAGGAGGTGGCTGATGCCCTGGGAGGGGGTGCGGACCC CTGCAGGAGGTGGCTGATGCCGTGGGAGGGGGTGCGGACCC < 41bp 0.49367450612161 0.792580830819709 0.13501143 0.88958204 prediction 0.585161661639418 Functional Gain - KCNK4 ENSG00000182450 CDS Human protein_coding chr11:64064364 chr11:64064365 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_102509 0 0 0 0 1 KCNK4 chr11:64064350 3'AG 64064350 Downstream 16bp
chr7 31618018 31618018 1 + C A LUSC 31618014 + 31617994 31618034 41 CAAGAGCTTGTCTCATCTTGCAGGCAAAGGACCAGACTCAT CAAGAGCTTGTCTCATCTTGCAGGAAAAGGACCAGACTCAT < 41bp 0.412052785821602 0.792564753090267 0.53859997 0.8151899 prediction 0.585129506180535 Functional Gain - CCDC129 ENSG00000180347 CDS Human protein_coding chr7:31618014 chr7:31618018 synonymous SNV . 0 25 hm5C_associated_SNPs_102511 0 0 0 0 1 CCDC129 chr7:31618048 5'GT 31618048 Upstream 31bp
chr17 7943288 7943288 1 + C A LUAD 7943284 + 7943264 7943304 41 CGCCAGGAGGAGCTTCAGGCCCGGCAGGAGATGTACCAGTG CGCCAGGAGGAGCTTCAGGCCCGGAAGGAGATGTACCAGTG < 41bp 0.45247831996745 0.792501261983142 0.27468485 0.44247288 prediction 0.585002523966284 Functional Gain - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7943284 chr17:7943288 nonsynonymous SNV 0.389 1 25 hm5C_associated_SNPs_102514 0 0 0 0 2 ALOX15B chr17:7943220 3'AG 7943220 Downstream 69bp
chr17 7943288 7943288 1 + C A LUAD 7943284 + 7943264 7943304 41 CGCCAGGAGGAGCTTCAGGCCCGGCAGGAGATGTACCAGTG CGCCAGGAGGAGCTTCAGGCCCGGAAGGAGATGTACCAGTG < 41bp 0.45247831996745 0.792501261983142 0.27468485 0.44247288 prediction 0.585002523966284 Functional Gain - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7943284 chr17:7943288 nonsynonymous SNV 0.389 1 25 hm5C_associated_SNPs_102514 0 0 0 0 2 ALOX15B chr17:7943301 5'GT 7943301 Upstream 14bp
chr12 48359923 48359923 1 + C A PAAD 48359919 + 48359899 48359939 41 TTCTACACGGTGGCAGTGACCAGCCTGTCCAGCCAGATTCA TTCTACACGGTGGCAGTGACCAGCATGTCCAGCCAGATTCA < 41bp 0.615003233404429 0.907479211444301 0.053772718 0.11392975 prediction 0.584951956079745 Functional Gain - TMEM106C ENSG00000134291 CDS Human protein_coding chr12:48359919 chr12:48359923 nonsynonymous SNV 0.993 3 25 hm5C_associated_SNPs_102516 0 0 1 0 3 TMEM106C chr12:48359872 3'AG 48359872 Downstream 52bp
chr12 48359923 48359923 1 + C A PAAD 48359919 + 48359899 48359939 41 TTCTACACGGTGGCAGTGACCAGCCTGTCCAGCCAGATTCA TTCTACACGGTGGCAGTGACCAGCATGTCCAGCCAGATTCA < 41bp 0.615003233404429 0.907479211444301 0.053772718 0.11392975 prediction 0.584951956079745 Functional Gain - TMEM106C ENSG00000134291 CDS Human protein_coding chr12:48359919 chr12:48359923 nonsynonymous SNV 0.993 3 25 hm5C_associated_SNPs_102516 0 0 1 0 3 TMEM106C chr12:48359955 5'GT 48359955 Upstream 33bp
chr12 48359923 48359923 1 + C A PAAD 48359919 + 48359899 48359939 41 TTCTACACGGTGGCAGTGACCAGCCTGTCCAGCCAGATTCA TTCTACACGGTGGCAGTGACCAGCATGTCCAGCCAGATTCA < 41bp 0.615003233404429 0.907479211444301 0.053772718 0.11392975 prediction 0.584951956079745 Functional Gain - TMEM106C ENSG00000134291 CDS Human protein_coding chr12:48359919 chr12:48359923 nonsynonymous SNV 0.993 3 25 hm5C_associated_SNPs_102516 0 0 1 0 3 TMEM106C chr12:48360012 5'GT 48360012 Upstream 90bp
chr16 816735 816735 1 + T G rs377354840 816732 + 816712 816752 41 AGACAAAGACACCCTAGACACCCTGACCGCCTTCTACCCTG AGACAAAGACACCCTAGACACCCGGACCGCCTTCTACCCTG < 41bp 0.404260926453922 0.7924239570307 0.06659323 0.25209588 prediction 0.5848479140614 Functional Gain - MSLN ENSG00000102854 CDS Human protein_coding chr16:816732 chr16:816735 nonsynonymous SNV 0.005 4 24 hm5C_associated_SNPs_102520 0 0 0 0 3 MSLN chr16:816644 3'AG 816644 Downstream 92bp
chr16 816735 816735 1 + T G rs377354840 816732 + 816712 816752 41 AGACAAAGACACCCTAGACACCCTGACCGCCTTCTACCCTG AGACAAAGACACCCTAGACACCCGGACCGCCTTCTACCCTG < 41bp 0.404260926453922 0.7924239570307 0.06659323 0.25209588 prediction 0.5848479140614 Functional Gain - MSLN ENSG00000102854 CDS Human protein_coding chr16:816732 chr16:816735 nonsynonymous SNV 0.005 4 24 hm5C_associated_SNPs_102520 0 0 0 0 3 MSLN chr16:816668 3'AG 816668 Downstream 68bp
chr16 816735 816735 1 + T G rs377354840 816732 + 816712 816752 41 AGACAAAGACACCCTAGACACCCTGACCGCCTTCTACCCTG AGACAAAGACACCCTAGACACCCGGACCGCCTTCTACCCTG < 41bp 0.404260926453922 0.7924239570307 0.06659323 0.25209588 prediction 0.5848479140614 Functional Gain - MSLN ENSG00000102854 CDS Human protein_coding chr16:816732 chr16:816735 nonsynonymous SNV 0.005 4 24 hm5C_associated_SNPs_102520 0 0 0 0 3 MSLN chr16:816810 5'GT 816810 Upstream 76bp
chr1 249211538 249211538 1 + T A SKCM 249211534 + 249211514 249211554 41 AGGTCAGACCTCTCATCATCCGGATGAACTGCAATTTCCAG AGGTCAGACCTCTCATCATCCGGAAGAACTGCAATTTCCAG < 41bp 0.504838014756381 0.797260049155231 0.5818284 0.61890376 prediction 0.584844068797701 Functional Gain - PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249211534 chr1:249211538 nonsynonymous SNV 0.940 1 25 hm5C_associated_SNPs_102522 0 0 0 0 1 PGBD2 chr1:249211478 3'AG 249211478 Downstream 61bp
chr17 65026640 65026640 1 + T A LUAD 65026636 + 65026616 65026656 41 TTCCAGCAACACAGGTGACCCGAGTGACAAGCGGGACGAAG TTCCAGCAACACAGGTGACCCGAGAGACAAGCGGGACGAAG < 41bp 0.498474079249747 0.792406330619417 0.5204268 0.5642609 prediction 0.584812661238834 Functional Gain - CACNG4 ENSG00000075461 CDS Human protein_coding chr17:65026636 chr17:65026640 nonsynonymous SNV 0.826 3 25 hm5C_associated_SNPs_102524 0 0 0 0 1 CACNG4 chr17:65026582 3'AG 65026582 Downstream 59bp
chr16 58537784 58537784 1 + C A LUAD 58537780 + 58537760 58537800 41 AGGGGAACCGCCCAGCCATCCTCACCTACCATGATGTGGGC AGGGGAACCGCCCAGCCATCCTCAACTACCATGATGTGGGC < 41bp 0.372555516472453 0.792396621201216 0.06268242 0.26531976 prediction 0.584793242402431 Functional Gain - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58537780 chr16:58537784 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102526 0 0 0 0 3 NDRG4 chr16:58537702 3'AG 58537702 Downstream 83bp
chr16 58537784 58537784 1 + C A LUAD 58537780 + 58537760 58537800 41 AGGGGAACCGCCCAGCCATCCTCACCTACCATGATGTGGGC AGGGGAACCGCCCAGCCATCCTCAACTACCATGATGTGGGC < 41bp 0.372555516472453 0.792396621201216 0.06268242 0.26531976 prediction 0.584793242402431 Functional Gain - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58537780 chr16:58537784 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102526 0 0 0 0 3 NDRG4 chr16:58537807 5'GT 58537807 Upstream 24bp
chr16 58537784 58537784 1 + C A LUAD 58537780 + 58537760 58537800 41 AGGGGAACCGCCCAGCCATCCTCACCTACCATGATGTGGGC AGGGGAACCGCCCAGCCATCCTCAACTACCATGATGTGGGC < 41bp 0.372555516472453 0.792396621201216 0.06268242 0.26531976 prediction 0.584793242402431 Functional Gain - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58537780 chr16:58537784 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102526 0 0 0 0 3 NDRG4 chr16:58537861 5'GT 58537861 Upstream 78bp
chr6 142539729 142539729 1 + T A HNSC 142539725 + 142539705 142539745 41 GCAGTATGAAGATGTAAGCACTGCTGTCCAGAATCTACAAA GCAGTATGAAGATGTAAGCACTGCAGTCCAGAATCTACAAA < 41bp 0.48371794771897 0.792350393181891 0.10011798 0.13201672 prediction 0.584700786363781 Functional Gain - VTA1 ENSG00000009844 CDS Human protein_coding chr6:142539725 chr6:142539729 synonymous SNV . 0 25 hm5C_associated_SNPs_102527 0 0 1 0 1 VTA1 chr6:142539635 3'AG 142539635 Downstream 95bp
chr11 20515752 20515752 1 + T G COAD 20515749 + 20515729 20515769 41 GCCCTCAGAGCACCAAAACACACTGGAAACAAACAGTATTT GCCCTCAGAGCACCAAAACACACGGGAAACAAACAGTATTT < 41bp 0.427018698840479 0.792343594471223 0.04715258 0.23850816 prediction 0.584687188942446 Functional Gain - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20515749 chr11:20515752 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_102529 0 0 1 0 2 PRMT3 chr11:20515713 3'AG 20515713 Downstream 40bp
chr11 20515752 20515752 1 + T G COAD 20515749 + 20515729 20515769 41 GCCCTCAGAGCACCAAAACACACTGGAAACAAACAGTATTT GCCCTCAGAGCACCAAAACACACGGGAAACAAACAGTATTT < 41bp 0.427018698840479 0.792343594471223 0.04715258 0.23850816 prediction 0.584687188942446 Functional Gain - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20515749 chr11:20515752 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_102529 0 0 1 0 2 PRMT3 chr11:20515800 5'GT 20515800 Upstream 49bp
chr19 35551628 35551628 1 + C G KIRC 35551627 + 35551607 35551647 41 GGGGTGCAGGCTGTGGTCTACCACGGGGGCTATCTTCCCTT GGGGTGCAGGCTGTGGTCTACGACGGGGGCTATCTTCCCTT < 41bp 0.517672273314905 0.809979367340917 0.46328068 0.74075353 prediction 0.584614188052025 Functional Gain - HPN ENSG00000105707 CDS Human protein_coding chr19:35551627 chr19:35551628 nonsynonymous SNV 0.789 5 22 hm5C_associated_SNPs_102534 0 0 1 0 2 HPN chr19:35551531 3'AG 35551531 Downstream 98bp
chr19 35551628 35551628 1 + C G KIRC 35551627 + 35551607 35551647 41 GGGGTGCAGGCTGTGGTCTACCACGGGGGCTATCTTCCCTT GGGGTGCAGGCTGTGGTCTACGACGGGGGCTATCTTCCCTT < 41bp 0.517672273314905 0.809979367340917 0.46328068 0.74075353 prediction 0.584614188052025 Functional Gain - HPN ENSG00000105707 CDS Human protein_coding chr19:35551627 chr19:35551628 nonsynonymous SNV 0.789 5 22 hm5C_associated_SNPs_102534 0 0 1 0 2 HPN chr19:35551721 5'GT 35551721 Upstream 94bp
chr3 11314019 11314019 1 + C A rs536650425 11314015 + 11313995 11314035 41 GGCATGCCTCTGCTCCTTTGCGCACGCGCGCCGCTTCCCAG GGCATGCCTCTGCTCCTTTGCGCAAGCGCGCCGCTTCCCAG < 41bp 0.428905065269975 0.792305528205694 0.39200598 0.3973533 prediction 0.584611056411387 Functional Gain - ATG7 ENSG00000197548 UTR5 Human protein_coding chr3:11314015 chr3:11314019 . . 0 25 hm5C_associated_SNPs_102535 0 0 0 0 1 ATG7 chr3:11314116 5'GT 11314116 Upstream 98bp
chr4 86863375 86863375 1 + T A LUSC 86863371 + 86863351 86863391 41 GACTGCCAGGCCAGGCTAATCTTGTTAAGGAGCTCCAAGAT GACTGCCAGGCCAGGCTAATCTTGATAAGGAGCTCCAAGAT < 41bp 0.52850103644316 0.820753534269825 0.21147716 0.25296634 prediction 0.584504995653331 Functional Gain - ARHGAP24 ENSG00000138639 CDS Human protein_coding chr4:86863371 chr4:86863375 nonsynonymous SNV 0.580 4 25 hm5C_associated_SNPs_102538 0 0 0 0 1 ARHGAP24 chr4:86863426 5'GT 86863426 Upstream 52bp
chr4 84457903 84457903 1 + T A LIHC 84457899 + 84457879 84457919 41 CCGAGATCTACATGAAGATCCTAGTGAAAACTTTAGAGGTG CCGAGATCTACATGAAGATCCTAGAGAAAACTTTAGAGGTG < 41bp 0.517328065482652 0.809543186135164 0.19339782 0.1837824 prediction 0.584430241305024 Functional Gain - GPAT3 ENSG00000138678 CDS Human protein_coding chr4:84457899 chr4:84457903 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_102539 0 0 0 0 1 GPAT3 chr4:84457916 5'GT 84457916 Upstream 14bp
chr2 176965269 176965269 1 + C A LUSC 176965265 + 176965245 176965285 41 TGCAGGCCTGCCGTGGGGGGCGGCCCCGGGGAGGGCCCGCA TGCAGGCCTGCCGTGGGGGGCGGCACCGGGGAGGGCCCGCA < 41bp 0.596240408675348 0.888453957857285 0.9150319 0.921455 prediction 0.584427098363874 Functional Gain - HOXD12 ENSG00000170178 CDS Human protein_coding chr2:176965265 chr2:176965269 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_102540 0 0 0 0 1 HOXD12 chr2:176965250 3'AG 176965250 Downstream 20bp
chr3 12447409 12447409 1 + C G BLCA 12447408 + 12447388 12447428 41 GTTTGGGCGGATGCCACAGGCCGAGAAGGAGAAGCTGTTGG GTTTGGGCGGATGCCACAGGCGGAGAAGGAGAAGCTGTTGG < 41bp 0.496093437985899 0.792172152919079 0.050022185 0.78173125 prediction 0.584344305838157 Functional Gain - PPARG ENSG00000132170 CDS Human protein_coding chr3:12447408 chr3:12447409 synonymous SNV . 0 22 hm5C_associated_SNPs_102546 0 0 1 0 1 PPARG chr3:12447381 3'AG 12447381 Downstream 29bp
chr20 44439565 44439565 1 + C A BLCA 44439561 + 44439541 44439581 41 GGAGGACATCCGGGACCTTGCGGCCAGTGATGATTACAGGT GGAGGACATCCGGGACCTTGCGGCAAGTGATGATTACAGGT < 41bp 0.616203232991325 0.908367037605456 0.31058633 0.50074387 prediction 0.584327609228262 Functional Gain - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44439561 chr20:44439565 synonymous SNV . 0 25 hm5C_associated_SNPs_102547 0 0 0 0 2 DNTTIP1 chr20:44439524 3'AG 44439524 Downstream 42bp
chr20 44439565 44439565 1 + C A BLCA 44439561 + 44439541 44439581 41 GGAGGACATCCGGGACCTTGCGGCCAGTGATGATTACAGGT GGAGGACATCCGGGACCTTGCGGCAAGTGATGATTACAGGT < 41bp 0.616203232991325 0.908367037605456 0.31058633 0.50074387 prediction 0.584327609228262 Functional Gain - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44439561 chr20:44439565 synonymous SNV . 0 25 hm5C_associated_SNPs_102547 0 0 0 0 2 DNTTIP1 chr20:44439579 5'GT 44439579 Upstream 15bp
chr17 48733283 48733283 1 + T G SKCM 48733280 + 48733260 48733300 41 CCTGGGTGCCCTGCATCTACCTGTGGGTCGCCCTGCCCTGC CCTGGGTGCCCTGCATCTACCTGGGGGTCGCCCTGCCCTGC < 41bp 0.608966214307635 0.901105688792273 0.7254298 0.9394765 prediction 0.584278948969276 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48733280 chr17:48733283 nonsynonymous SNV 0.811 3 24 hm5C_associated_SNPs_102548 0 0 1 0 2 ABCC3 chr17:48733193 3'AG 48733193 Downstream 91bp
chr17 48733283 48733283 1 + T G SKCM 48733280 + 48733260 48733300 41 CCTGGGTGCCCTGCATCTACCTGTGGGTCGCCCTGCCCTGC CCTGGGTGCCCTGCATCTACCTGGGGGTCGCCCTGCCCTGC < 41bp 0.608966214307635 0.901105688792273 0.7254298 0.9394765 prediction 0.584278948969276 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48733280 chr17:48733283 nonsynonymous SNV 0.811 3 24 hm5C_associated_SNPs_102548 0 0 1 0 2 ABCC3 chr17:48733369 5'GT 48733369 Upstream 87bp
chr15 41859680 41859680 1 + T G SKCM 41859677 + 41859657 41859697 41 AGCCTCAGGGTGCGCTGTGCCAATGCCTTGGGGCCCTCTCC AGCCTCAGGGTGCGCTGTGCCAAGGCCTTGGGGCCCTCTCC < 41bp 0.392944619530308 0.79211805928123 0.23985344 0.84133446 prediction 0.584236118562459 Functional Gain - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41859677 chr15:41859680 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_102551 0 0 1 0 1 TYRO3 chr15:41859735 5'GT 41859735 Upstream 56bp
chr9 140147586 140147586 1 + C A rs184975054 140147582 + 140147562 140147602 41 GGCAGCCCGAACCCCTGGCCCAGCCGCCTACCACGTGGAGG GGCAGCCCGAACCCCTGGCCCAGCAGCCTACCACGTGGAGG < 41bp 0.410854590284521 0.792113777690737 0.3502656 0.6364218 prediction 0.584227555381474 Functional Gain - STPG3 ENSG00000197768 CDS Human protein_coding chr9:140147582 chr9:140147586 nonsynonymous SNV 0.094 0 25 hm5C_associated_SNPs_102552 0 0 0 0 2 STPG3 chr9:140147551 3'AG 140147551 Downstream 36bp
chr9 140147586 140147586 1 + C A rs184975054 140147582 + 140147562 140147602 41 GGCAGCCCGAACCCCTGGCCCAGCCGCCTACCACGTGGAGG GGCAGCCCGAACCCCTGGCCCAGCAGCCTACCACGTGGAGG < 41bp 0.410854590284521 0.792113777690737 0.3502656 0.6364218 prediction 0.584227555381474 Functional Gain - STPG3 ENSG00000197768 CDS Human protein_coding chr9:140147582 chr9:140147586 nonsynonymous SNV 0.094 0 25 hm5C_associated_SNPs_102552 0 0 0 0 2 STPG3 chr9:140147567 3'AG 140147567 Downstream 20bp
chr10 1061765 1061765 1 + C G rs41294962 1061764 + 1061744 1061784 41 AAGCGGGAAGACTCTGCTCCCCCGTCCTCTGTGGCCCGGAG AAGCGGGAAGACTCTGCTCCCGCGTCCTCTGTGGCCCGGAG < 41bp 0.512286412768054 0.804395051998874 0.106996 0.37896654 prediction 0.58421727846164 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1061764 chr10:1061765 nonsynonymous SNV 0.039 1 22 hm5C_associated_SNPs_102553 0 0 1 0 2 GTPBP4 chr10:1061693 3'AG 1061693 Downstream 73bp
chr10 1061765 1061765 1 + C G rs41294962 1061764 + 1061744 1061784 41 AAGCGGGAAGACTCTGCTCCCCCGTCCTCTGTGGCCCGGAG AAGCGGGAAGACTCTGCTCCCGCGTCCTCTGTGGCCCGGAG < 41bp 0.512286412768054 0.804395051998874 0.106996 0.37896654 prediction 0.58421727846164 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1061764 chr10:1061765 nonsynonymous SNV 0.039 1 22 hm5C_associated_SNPs_102553 0 0 1 0 2 GTPBP4 chr10:1061836 5'GT 1061836 Upstream 72bp
chr1 16073524 16073524 1 + C A rs55947911 16073520 + 16073500 16073540 41 TCTGGTGTCTCGTGGGCGTCCGCACCCTGCTTGACCTCTGC TCTGGTGTCTCGTGGGCGTCCGCAACCTGCTTGACCTCTGC < 41bp 0.389399737349558 0.79210073826135 0.21296534 0.42389393 prediction 0.5842014765227 Functional Gain - TMEM82 ENSG00000162460 CDS Human protein_coding chr1:16073520 chr1:16073524 nonsynonymous SNV 0.020 0 25 hm5C_associated_SNPs_102554 0 0 0 0 1 TMEM82 chr1:16073549 5'GT 16073549 Upstream 26bp
chr11 43471754 43471754 1 + C A UCEC 43471750 + 43471730 43471770 41 ACTTGCATGGGGTTTCCAACCGAGCCAGCCTGCACTACACA ACTTGCATGGGGTTTCCAACCGAGACAGCCTGCACTACACA < 41bp 0.609816321504621 0.901902502310529 0.87540233 0.8939722 prediction 0.584172361611817 Functional Gain - TTC17 ENSG00000052841 CDS Human protein_coding chr11:43471750 chr11:43471754 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_102555 0 0 0 0 1 TTC17 chr11:43471791 5'GT 43471791 Upstream 38bp
chr11 65780325 65780325 1 + C A LIHC 65780321 + 65780301 65780341 41 TGGCCGGCATCAAGTACTTCCTGACGATGGAGATGGGGAGC TGGCCGGCATCAAGTACTTCCTGAAGATGGAGATGGGGAGC < 41bp 0.389666840381283 0.792065792860837 0.13873139 0.23901898 prediction 0.584131585721674 Functional Gain - CST6 ENSG00000175315 CDS Human protein_coding chr11:65780321 chr11:65780325 nonsynonymous SNV 0.332 1 25 hm5C_associated_SNPs_102556 0 0 0 0 2 CST6 chr11:65780297 3'AG 65780297 Downstream 29bp
chr11 65780325 65780325 1 + C A LIHC 65780321 + 65780301 65780341 41 TGGCCGGCATCAAGTACTTCCTGACGATGGAGATGGGGAGC TGGCCGGCATCAAGTACTTCCTGAAGATGGAGATGGGGAGC < 41bp 0.389666840381283 0.792065792860837 0.13873139 0.23901898 prediction 0.584131585721674 Functional Gain - CST6 ENSG00000175315 CDS Human protein_coding chr11:65780321 chr11:65780325 nonsynonymous SNV 0.332 1 25 hm5C_associated_SNPs_102556 0 0 0 0 2 CST6 chr11:65780422 5'GT 65780422 Upstream 98bp
chr12 111342442 111342442 1 + C A LUSC 111342438 + 111342418 111342458 41 CTGCTGCTGTTGGAGACCTACAGGCGCATCCTGGAAGTGGA CTGCTGCTGTTGGAGACCTACAGGAGCATCCTGGAAGTGGA < 41bp 0.608278656445102 0.900264799677179 0.83111715 0.82977533 prediction 0.583972286464153 Functional Gain - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111342438 chr12:111342442 nonsynonymous SNV 0.009 3 25 hm5C_associated_SNPs_102561 0 0 0 0 1 CCDC63 chr12:111342392 3'AG 111342392 Downstream 51bp
chr9 130147330 130147330 1 + C A UCEC 130147326 + 130147306 130147346 41 TCTGTGCTTTCCCGTATCTCCTGGCCTTCACCACCGACTCC TCTGTGCTTTCCCGTATCTCCTGGACTTCACCACCGACTCC < 41bp 0.612146743609205 0.904129102871395 0.3597007 0.3498174 prediction 0.58396471852438 Functional Gain - GARNL3 ENSG00000136895 CDS Human protein_coding chr9:130147326 chr9:130147330 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102562 0 0 0 0 1 GARNL3 chr9:130147306 3'AG 130147306 Downstream 25bp
chr16 2203012 2203012 1 + T A COAD 2203008 + 2202988 2203028 41 AGGTGGACTCTGCCCATGAGCGTGTGGTGAAGAGGGAGGAC AGGTGGACTCTGCCCATGAGCGTGAGGTGAAGAGGGAGGAC < 41bp 0.506336359526003 0.798278464712308 0.2964906 0.7337848 prediction 0.583884210372611 Functional Gain - RAB26 ENSG00000167964 CDS Human protein_coding chr16:2203008 chr16:2203012 nonsynonymous SNV 0.950 1 25 hm5C_associated_SNPs_102565 0 0 0 0 2 RAB26 chr16:2202990 3'AG 2202990 Downstream 23bp
chr16 2203012 2203012 1 + T A COAD 2203008 + 2202988 2203028 41 AGGTGGACTCTGCCCATGAGCGTGTGGTGAAGAGGGAGGAC AGGTGGACTCTGCCCATGAGCGTGAGGTGAAGAGGGAGGAC < 41bp 0.506336359526003 0.798278464712308 0.2964906 0.7337848 prediction 0.583884210372611 Functional Gain - RAB26 ENSG00000167964 CDS Human protein_coding chr16:2203008 chr16:2203012 nonsynonymous SNV 0.950 1 25 hm5C_associated_SNPs_102565 0 0 0 0 2 RAB26 chr16:2203046 5'GT 2203046 Upstream 35bp
chr2 209309526 209309526 1 + T A LUAD 209309522 + 209309502 209309542 41 CTACAAATTATTATTGGATCCTGGTGGAAGGTCTCTACCTG CTACAAATTATTATTGGATCCTGGAGGAAGGTCTCTACCTG < 41bp 0.517191590806819 0.809108458359585 0.3026225 0.3012349 prediction 0.583833735105532 Functional Gain - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209309522 chr2:209309526 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_102568 0 0 0 0 2 PTH2R chr2:209309459 3'AG 209309459 Downstream 68bp
chr2 209309526 209309526 1 + T A LUAD 209309522 + 209309502 209309542 41 CTACAAATTATTATTGGATCCTGGTGGAAGGTCTCTACCTG CTACAAATTATTATTGGATCCTGGAGGAAGGTCTCTACCTG < 41bp 0.517191590806819 0.809108458359585 0.3026225 0.3012349 prediction 0.583833735105532 Functional Gain - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209309522 chr2:209309526 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_102568 0 0 0 0 2 PTH2R chr2:209309612 5'GT 209309612 Upstream 87bp
chr14 62536499 62536499 1 + C A READ 62536495 + 62536475 62536515 41 ATTCAGCCGTTCGTTGTTGACACACGGAGAAGATGGCACAG ATTCAGCCGTTCGTTGTTGACACAAGGAGAAGATGGCACAG < 41bp 0.61521448833844 0.907108696758369 0.3544349 0.37606257 prediction 0.583788416839857 Functional Gain - SYT16 ENSG00000139973 CDS Human protein_coding chr14:62536495 chr14:62536499 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_102569 0 0 0 0 1 SYT16 chr14:62536533 5'GT 62536533 Upstream 35bp
chr1 19981647 19981647 1 + C G LUAD 19981646 + 19981626 19981666 41 TGCGAAGCCAAGAACATCACCCAGATCGTGGGCCACAGCGG TGCGAAGCCAAGAACATCACCGAGATCGTGGGCCACAGCGG < 41bp 0.496666773951091 0.791834960356468 0.017575294 0.2718367 prediction 0.583669920712937 Functional Gain - MINOS1-NBL1;NBL1 ENSG00000158747;ENSG00000270136 CDS Human other chr1:19981646 chr1:19981647 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_102574 0 0 1 0 1 MINOS1-NBL1;NBL1 chr1:19981693 5'GT 19981693 Upstream 47bp
chr3 52836783 52836783 1 + T A PRAD 52836779 + 52836759 52836799 41 TCTTCGGGAATTACATTGAGCGGCTCTGGGCCTACCTCACC TCTTCGGGAATTACATTGAGCGGCACTGGGCCTACCTCACC < 41bp 0.533490246447107 0.825253509941885 0.3060792 0.39977574 prediction 0.583526526989556 Functional Gain - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52836779 chr3:52836783 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_102578 0 0 1 0 1 ITIH3 chr3:52836822 5'GT 52836822 Upstream 40bp
chr11 14280831 14280831 1 + T A COAD 14280827 + 14280807 14280847 41 TTCACTCGGTGTGTTGCAGACGGCTCCACCTGCACCATGTC TTCACTCGGTGTGTTGCAGACGGCACCACCTGCACCATGTC < 41bp 0.48863721435823 0.791751569806229 0.22719908 0.33159256 prediction 0.583503139612457 Functional Gain - SPON1 ENSG00000152268 ncRNA_exonic Human other chr11:14280827 chr11:14280831 . 1.000 1 25 hm5C_associated_SNPs_102579 0 0 0 0 1 SPON1 chr11:14280826 3'AG 14280826 Downstream 6bp
chr3 169540651 169540651 1 + T G UCEC 169540649 + 169540629 169540669 41 TCCTGGACCTAAGCCAGAACCATCTGCACCACTGCCCGCTG TCCTGGACCTAAGCCAGAACCAGCTGCACCACTGCCCGCTG < 41bp 0.547816653953554 0.839537632400985 0.36262107 0.9042829 prediction 0.583441956894861 Functional Gain - LRRIQ4 ENSG00000188306 CDS Human protein_coding chr3:169540649 chr3:169540651 nonsynonymous SNV 0.018 0 23 hm5C_associated_SNPs_102581 0 0 0 0 1 LRRIQ4 chr3:169540729 5'GT 169540729 Upstream 79bp
chr13 51854621 51854621 1 + C A ESCA 51854617 + 51854597 51854637 41 GCATAAGAAGTTTCCTAAACCTGGCAGAGTACATCATGCCT GCATAAGAAGTTTCCTAAACCTGGAAGAGTACATCATGCCT < 41bp 0.395409672671591 0.791700284890159 0.25552037 0.20832953 prediction 0.583400569780318 Functional Gain - FAM124A ENSG00000150510 CDS Human protein_coding chr13:51854617 chr13:51854621 synonymous SNV . 0 25 hm5C_associated_SNPs_102583 0 0 0 0 1 FAM124A chr13:51854586 3'AG 51854586 Downstream 36bp
chrX 140984732 140984732 1 + C A LUAD 140984728 + 140984708 140984748 41 CCAGAGTCCTCCTGAGATTCCTCCCCAGGGTCCTCCCAAGA CCAGAGTCCTCCTGAGATTCCTCCACAGGGTCCTCCCAAGA < 41bp 0.371210043442957 0.791657152911022 0.087545395 0.9464033 prediction 0.583314305822044 Functional Gain - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140984728 chrX:140984732 synonymous SNV . 0 25 hm5C_associated_SNPs_102588 0 0 0 0 1 MAGEC3 chrX:140984668 3'AG 140984668 Downstream 65bp
chr10 45938873 45938873 1 + C A UCEC 45938869 + 45938849 45938889 41 CGCCCCCTGAGCCAGGTTCACGGCCGAGGTGGTAGACATCT CGCCCCCTGAGCCAGGTTCACGGCAGAGGTGGTAGACATCT < 41bp 0.614030932809717 0.905679438772949 0.27351904 0.4021406 prediction 0.583297011926464 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45938869 chr10:45938873 synonymous SNV . 0 25 hm5C_associated_SNPs_102591 0 0 1 0 1 ALOX5 chr10:45938864 3'AG 45938864 Downstream 10bp
chr11 60482521 60482521 1 + C A UCEC 60482517 + 60482497 60482537 41 CCTGGAATGGCGATTTCTGGCGTGCTGCTGGTCTTCTGCCT CCTGGAATGGCGATTTCTGGCGTGATGCTGGTCTTCTGCCT < 41bp 0.596507084251247 0.888153798160133 0.46627694 0.7879798 prediction 0.583293427817773 Functional Gain - MS4A8 ENSG00000166959 CDS Human protein_coding chr11:60482517 chr11:60482521 nonsynonymous SNV 0.019 1 25 hm5C_associated_SNPs_102593 0 0 0 0 2 MS4A8 chr11:60482494 3'AG 60482494 Downstream 28bp
chr11 60482521 60482521 1 + C A UCEC 60482517 + 60482497 60482537 41 CCTGGAATGGCGATTTCTGGCGTGCTGCTGGTCTTCTGCCT CCTGGAATGGCGATTTCTGGCGTGATGCTGGTCTTCTGCCT < 41bp 0.596507084251247 0.888153798160133 0.46627694 0.7879798 prediction 0.583293427817773 Functional Gain - MS4A8 ENSG00000166959 CDS Human protein_coding chr11:60482517 chr11:60482521 nonsynonymous SNV 0.019 1 25 hm5C_associated_SNPs_102593 0 0 0 0 2 MS4A8 chr11:60482607 5'GT 60482607 Upstream 87bp
chr14 100376629 100376629 1 + T G HNSC 100376626 + 100376606 100376646 41 TGTGTGACTTTCTCTGAAAACGGTGACACCATTACTGGAGA TGTGTGACTTTCTCTGAAAACGGGGACACCATTACTGGAGA < 41bp 0.412734410855198 0.791639998069613 0.45541736 0.92929256 prediction 0.583279996139227 Functional Gain - EML1 ENSG00000066629 CDS Human protein_coding chr14:100376626 chr14:100376629 synonymous SNV . 0 24 hm5C_associated_SNPs_102596 0 0 0 0 2 EML1 chr14:100376579 3'AG 100376579 Downstream 51bp
chr14 100376629 100376629 1 + T G HNSC 100376626 + 100376606 100376646 41 TGTGTGACTTTCTCTGAAAACGGTGACACCATTACTGGAGA TGTGTGACTTTCTCTGAAAACGGGGACACCATTACTGGAGA < 41bp 0.412734410855198 0.791639998069613 0.45541736 0.92929256 prediction 0.583279996139227 Functional Gain - EML1 ENSG00000066629 CDS Human protein_coding chr14:100376626 chr14:100376629 synonymous SNV . 0 24 hm5C_associated_SNPs_102596 0 0 0 0 2 EML1 chr14:100376678 5'GT 100376678 Upstream 50bp
chr10 119015014 119015014 1 + C A COAD 119015010 + 119014990 119015030 41 CTATTCAGCTCTTTGTGCTCCAGCCGTCCCGGGTGCAGCCA CTATTCAGCTCTTTGTGCTCCAGCAGTCCCGGGTGCAGCCA < 41bp 0.382323662339904 0.791624616631974 0.47493535 0.5610589 prediction 0.583249233263948 Functional Gain - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119015010 chr10:119015014 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_102598 0 0 0 0 3 SLC18A2 chr10:119014990 3'AG 119014990 Downstream 25bp
chr10 119015014 119015014 1 + C A COAD 119015010 + 119014990 119015030 41 CTATTCAGCTCTTTGTGCTCCAGCCGTCCCGGGTGCAGCCA CTATTCAGCTCTTTGTGCTCCAGCAGTCCCGGGTGCAGCCA < 41bp 0.382323662339904 0.791624616631974 0.47493535 0.5610589 prediction 0.583249233263948 Functional Gain - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119015010 chr10:119015014 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_102598 0 0 0 0 3 SLC18A2 chr10:119015033 5'GT 119015033 Upstream 20bp
chr10 119015014 119015014 1 + C A COAD 119015010 + 119014990 119015030 41 CTATTCAGCTCTTTGTGCTCCAGCCGTCCCGGGTGCAGCCA CTATTCAGCTCTTTGTGCTCCAGCAGTCCCGGGTGCAGCCA < 41bp 0.382323662339904 0.791624616631974 0.47493535 0.5610589 prediction 0.583249233263948 Functional Gain - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119015010 chr10:119015014 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_102598 0 0 0 0 3 SLC18A2 chr10:119015108 5'GT 119015108 Upstream 95bp
chr16 31500246 31500246 1 + C G SKCM 31500245 + 31500225 31500265 41 AGTGTCGGTGGCCTGGCTTCCCGTGGTGCAGGCGGCACAGG AGTGTCGGTGGCCTGGCTTCCGGTGGTGCAGGCGGCACAGG < 41bp 0.514502571188617 0.806115484995808 0.2731902 0.8375054 prediction 0.583225827614382 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500245 chr16:31500246 synonymous SNV . 0 22 hm5C_associated_SNPs_102599 0 0 0 0 1 SLC5A2 chr16:31500201 3'AG 31500201 Downstream 46bp
chr10 119013575 119013575 1 + C A LUSC 119013571 + 119013551 119013591 41 CTCGGCAGTGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGC CTCGGCAGTGTTTGCCTTCTCCAGAAGCTATGCCTTCCTGC < 41bp 0.480468456944182 0.791612233370174 0.45654872 0.90621185 prediction 0.583224466740349 Functional Gain - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119013571 chr10:119013575 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_102600 0 0 0 0 1 SLC18A2 chr10:119013642 5'GT 119013642 Upstream 68bp
chr6 26508825 26508825 1 + C A LUAD 26508821 + 26508801 26508841 41 TGGAAGATTCACGTCAGAAACTGCCTGAGAAAACAGAGAGA TGGAAGATTCACGTCAGAAACTGCATGAGAAAACAGAGAGA < 41bp 0.403852198926034 0.791596630024556 0.14786732 0.19180298 prediction 0.583193260049112 Functional Gain - BTN1A1 ENSG00000124557 CDS Human protein_coding chr6:26508821 chr6:26508825 nonsynonymous SNV 0.347 3 25 hm5C_associated_SNPs_102602 0 0 0 0 1 BTN1A1 chr6:26508729 3'AG 26508729 Downstream 97bp
chr10 118385573 118385573 1 + C A LUSC 118385569 + 118385549 118385589 41 GGCGGAGGACAGCTGGCCATCGGACATGTGCAAGGTAGGGC GGCGGAGGACAGCTGGCCATCGGAAATGTGCAAGGTAGGGC < 41bp 0.45101986627602 0.791574656611642 0.5316717 0.7123611 prediction 0.583149313223284 Functional Gain - PNLIPRP2 ENSG00000165862 CDS Human other chr10:118385569 chr10:118385573 nonsynonymous SNV 0.964 2 25 hm5C_associated_SNPs_102604 0 0 0 0 1 PNLIPRP2 chr10:118385582 5'GT 118385582 Upstream 10bp
chr8 66989096 66989096 1 + C A STAD 66989092 + 66989072 66989112 41 TAACACCTACTTCATGCTGTCGAGCTGGTGGGCAAAGGTGA TAACACCTACTTCATGCTGTCGAGATGGTGGGCAAAGGTGA < 41bp 0.403856428606805 0.791559009687484 0.30257702 0.36717916 prediction 0.583118019374968 Functional Gain - DNAJC5B ENSG00000147570 CDS Human protein_coding chr8:66989092 chr8:66989096 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_102606 0 0 0 0 1 DNAJC5B chr8:66989108 5'GT 66989108 Upstream 13bp
chr10 3143174 3143174 1 + T G rs190906331 3143172 + 3143152 3143192 41 GGTCACACCGCTTCCCTTGTCCTGGCCGGCATGCTCTGGTG GGTCACACCGCTTCCCTTGTCCGGGCCGGCATGCTCTGGTG < 41bp 0.448820808778818 0.791556910409763 0.13009128 0.8391825 prediction 0.583113820819526 Functional Gain - PFKP ENSG00000067057 CDS Human protein_coding chr10:3143172 chr10:3143174 synonymous SNV . 0 23 hm5C_associated_SNPs_102607 0 0 1 0 2 PFKP chr10:3143113 3'AG 3143113 Downstream 62bp
chr10 3143174 3143174 1 + T G rs190906331 3143172 + 3143152 3143192 41 GGTCACACCGCTTCCCTTGTCCTGGCCGGCATGCTCTGGTG GGTCACACCGCTTCCCTTGTCCGGGCCGGCATGCTCTGGTG < 41bp 0.448820808778818 0.791556910409763 0.13009128 0.8391825 prediction 0.583113820819526 Functional Gain - PFKP ENSG00000067057 CDS Human protein_coding chr10:3143172 chr10:3143174 synonymous SNV . 0 23 hm5C_associated_SNPs_102607 0 0 1 0 2 PFKP chr10:3143192 5'GT 3143192 Upstream 19bp
chr9 130442503 130442503 1 + T G UCEC 130442501 + 130442481 130442521 41 TCTACCCGTTCCTCTGCCTCCTTCAGCACCACCGCCGTCAG TCTACCCGTTCCTCTGCCTCCTGCAGCACCACCGCCGTCAG < 41bp 0.546900412810725 0.838435010059057 0.07483736 0.151936 prediction 0.583069194496663 Functional Gain - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130442501 chr9:130442503 nonsynonymous SNV 0.521 1 23 hm5C_associated_SNPs_102608 0 0 1 0 2 STXBP1 chr9:130442436 3'AG 130442436 Downstream 68bp
chr9 130442503 130442503 1 + T G UCEC 130442501 + 130442481 130442521 41 TCTACCCGTTCCTCTGCCTCCTTCAGCACCACCGCCGTCAG TCTACCCGTTCCTCTGCCTCCTGCAGCACCACCGCCGTCAG < 41bp 0.546900412810725 0.838435010059057 0.07483736 0.151936 prediction 0.583069194496663 Functional Gain - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130442501 chr9:130442503 nonsynonymous SNV 0.521 1 23 hm5C_associated_SNPs_102608 0 0 1 0 2 STXBP1 chr9:130442521 5'GT 130442521 Upstream 19bp
chr20 362067 362067 1 + C A rs7260693 362063 + 362043 362083 41 GGCCCCGCGGAGCGTGGGGTCGCCCGAGTTGGGCTGGGGAA GGCCCCGCGGAGCGTGGGGTCGCCAGAGTTGGGCTGGGGAA < 41bp 0.457257085955925 0.791526317060521 0.76999664 0.9131558 prediction 0.583052634121043 Functional Gain - TRIB3 ENSG00000101255 UTR5 Human protein_coding chr20:362063 chr20:362067 . . 0 25 hm5C_associated_SNPs_102610 0 0 1 0 1 TRIB3 chr20:362144 5'GT 362144 Upstream 78bp
chr19 7533767 7533767 1 + T G rs10405143 7533765 + 7533745 7533785 41 GGGAAGGGCTGGAGGGCCCTCGTGTGAGCATGCTGCCATCC GGGAAGGGCTGGAGGGCCCTCGGGTGAGCATGCTGCCATCC < 41bp 0.56901799431273 0.860541803527252 0.40340072 0.9077765 prediction 0.583047618429044 Functional Gain - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7533765 chr19:7533767 synonymous SNV . 0 23 hm5C_associated_SNPs_102611 0 0 0 0 1 ARHGEF18 chr19:7533711 3'AG 7533711 Downstream 57bp
chr3 51977385 51977385 1 + C G rs61729070 51977384 + 51977364 51977404 41 GGACAGCCATGGCTCCAAAGCCGAAGCCCTGGGTACAGACT GGACAGCCATGGCTCCAAAGCGGAAGCCCTGGGTACAGACT < 41bp 0.50210680824152 0.793627591696386 0.86768526 0.9241563 prediction 0.583041566909732 Functional Gain - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51977384 chr3:51977385 nonsynonymous SNV 0.016 0 22 hm5C_associated_SNPs_102612 0 0 0 0 2 PARP3 chr3:51977365 3'AG 51977365 Downstream 21bp
chr3 51977385 51977385 1 + C G rs61729070 51977384 + 51977364 51977404 41 GGACAGCCATGGCTCCAAAGCCGAAGCCCTGGGTACAGACT GGACAGCCATGGCTCCAAAGCGGAAGCCCTGGGTACAGACT < 41bp 0.50210680824152 0.793627591696386 0.86768526 0.9241563 prediction 0.583041566909732 Functional Gain - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51977384 chr3:51977385 nonsynonymous SNV 0.016 0 22 hm5C_associated_SNPs_102612 0 0 0 0 2 PARP3 chr3:51977370 3'AG 51977370 Downstream 16bp
chr19 1533972 1533972 1 + C A rs11084897 1533968 + 1533948 1533988 41 CCTGTGCCACCTGCTGGACCCGGCCTCTGCCTCCTGCGCTT CCTGTGCCACCTGCTGGACCCGGCATCTGCCTCCTGCGCTT < 41bp 0.606215850819147 0.897721534795409 0.25705665 0.5617325 prediction 0.583011367952524 Functional Gain - PLK5 ENSG00000185988 CDS Human protein_coding chr19:1533968 chr19:1533972 nonsynonymous SNV 0.018 0 25 hm5C_associated_SNPs_102613 0 0 1 0 2 PLK5 chr19:1533930 3'AG 1533930 Downstream 43bp
chr19 1533972 1533972 1 + C A rs11084897 1533968 + 1533948 1533988 41 CCTGTGCCACCTGCTGGACCCGGCCTCTGCCTCCTGCGCTT CCTGTGCCACCTGCTGGACCCGGCATCTGCCTCCTGCGCTT < 41bp 0.606215850819147 0.897721534795409 0.25705665 0.5617325 prediction 0.583011367952524 Functional Gain - PLK5 ENSG00000185988 CDS Human protein_coding chr19:1533968 chr19:1533972 nonsynonymous SNV 0.018 0 25 hm5C_associated_SNPs_102613 0 0 1 0 2 PLK5 chr19:1534040 5'GT 1534040 Upstream 69bp
chr15 74166098 74166098 1 + C A COAD 74166094 + 74166074 74166114 41 CAGCCTCTCTGCCAGACAGTCAGCCTCCTTCATCCTGGTGC CAGCCTCTCTGCCAGACAGTCAGCATCCTTCATCCTGGTGC < 41bp 0.39598270575201 0.791485298766039 0.42840648 0.33991516 prediction 0.582970597532079 Functional Gain - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74166094 chr15:74166098 synonymous SNV . 0 25 hm5C_associated_SNPs_102616 0 0 0 0 1 TBC1D21 chr15:74166110 5'GT 74166110 Upstream 13bp
chr9 136508685 136508685 1 + C A UCS 136508681 + 136508661 136508701 41 CGCCTCAACTACTGCCGCCACGTGCTGGCCGCCTGGGCCCT CGCCTCAACTACTGCCGCCACGTGATGGCCGCCTGGGCCCT < 41bp 0.390009318505437 0.791477189091744 0.06475943 0.15548593 prediction 0.582954378183488 Functional Gain - DBH ENSG00000123454 CDS Human protein_coding chr9:136508681 chr9:136508685 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_102617 0 0 0 0 1 DBH chr9:136508711 5'GT 136508711 Upstream 27bp
chr22 40060895 40060895 1 + T A LUAD 40060891 + 40060871 40060911 41 CCAAGATCTTGGGGGTCCTCCGAGTCTTGCGGCTCCTGCGC CCAAGATCTTGGGGGTCCTCCGAGACTTGCGGCTCCTGCGC < 41bp 0.510376728570019 0.801834861180112 0.94374806 0.94289815 prediction 0.582916265220186 Functional Gain - CACNA1I ENSG00000100346 CDS Human protein_coding chr22:40060891 chr22:40060895 nonsynonymous SNV 0.975 5 25 hm5C_associated_SNPs_102618 0 0 0 0 1 CACNA1I chr22:40060928 5'GT 40060928 Upstream 34bp
chr20 47626847 47626847 1 + T A rs2295580 47626843 + 47626823 47626863 41 CCAGGCGGCCAACATCCGCTCAGGTTGGAAGAACATCTTTG CCAGGCGGCCAACATCCGCTCAGGATGGAAGAACATCTTTG < 41bp 0.486377233494184 0.791394067699863 0.62540686 0.862036 prediction 0.582788135399726 Functional Gain - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47626843 chr20:47626847 synonymous SNV . 0 25 hm5C_associated_SNPs_102622 0 0 1 0 2 ARFGEF2 chr20:47626769 3'AG 47626769 Downstream 79bp
chr20 47626847 47626847 1 + T A rs2295580 47626843 + 47626823 47626863 41 CCAGGCGGCCAACATCCGCTCAGGTTGGAAGAACATCTTTG CCAGGCGGCCAACATCCGCTCAGGATGGAAGAACATCTTTG < 41bp 0.486377233494184 0.791394067699863 0.62540686 0.862036 prediction 0.582788135399726 Functional Gain - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47626843 chr20:47626847 synonymous SNV . 0 25 hm5C_associated_SNPs_102622 0 0 1 0 2 ARFGEF2 chr20:47626941 5'GT 47626941 Upstream 95bp
chr10 104211884 104211884 1 + C A rs186888664 104211880 + 104211860 104211900 41 GGCATGATCTCGGCACACTGCAGCCACCGTCTTCCAGGTTC GGCATGATCTCGGCACACTGCAGCAACCGTCTTCCAGGTTC < 41bp 0.434590814767052 0.791308411131557 0.24984312 0.37587038 prediction 0.582616822263115 Functional Gain - RPARP-AS1 ENSG00000269609 ncRNA_exonic Human processed_transcript chr10:104211880 chr10:104211884 . . 0 25 hm5C_associated_SNPs_102625 0 0 1 0 2 RPARP-AS1 chr10:104211847 3'AG 104211847 Downstream 38bp
chr10 104211884 104211884 1 + C A rs186888664 104211880 + 104211860 104211900 41 GGCATGATCTCGGCACACTGCAGCCACCGTCTTCCAGGTTC GGCATGATCTCGGCACACTGCAGCAACCGTCTTCCAGGTTC < 41bp 0.434590814767052 0.791308411131557 0.24984312 0.37587038 prediction 0.582616822263115 Functional Gain - RPARP-AS1 ENSG00000269609 ncRNA_exonic Human processed_transcript chr10:104211880 chr10:104211884 . . 0 25 hm5C_associated_SNPs_102625 0 0 1 0 2 RPARP-AS1 chr10:104211944 5'GT 104211944 Upstream 61bp
chr21 35747805 35747805 1 + C A rs544115822 35747801 + 35747781 35747821 41 TTCGGGACCTGTAGTTTTCCCCGGCAGGACGGTAGAAGTCG TTCGGGACCTGTAGTTTTCCCCGGAAGGACGGTAGAAGTCG < 41bp 0.585048071328489 0.87632979199973 0.36276895 0.36969638 prediction 0.582563441342482 Functional Gain - SMIM11A;SMIM11B ENSG00000205670 UTR5 Human protein_coding chr21:35747801 chr21:35747805 . . 0 25 hm5C_associated_SNPs_102627 0 0 1 0 1 SMIM11A;SMIM11B chr21:35747866 5'GT 35747866 Upstream 62bp
chr7 96635683 96635683 1 + C G LUAD 96635682 + 96635662 96635702 41 AGCCCTTACCTCCAGTCCTACCACAACAGCAGCGCAGCCGC AGCCCTTACCTCCAGTCCTACGACAACAGCAGCGCAGCCGC < 41bp 0.508217519310077 0.799492418365355 0.04498169 0.03831908 prediction 0.582549798110556 Functional Gain - DLX6 ENSG00000006377 CDS Human protein_coding chr7:96635682 chr7:96635683 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_102628 0 0 0 0 1 DLX6 chr7:96635725 5'GT 96635725 Upstream 43bp
chr19 42821086 42821086 1 + C A MESO 42821082 + 42821062 42821102 41 TACATGACCCTGTACACGCTCACCCATGTGGTGCTGCTCAT TACATGACCCTGTACACGCTCACCAATGTGGTGCTGCTCAT < 41bp 0.362656054762125 0.791271216330866 0.13441315 0.12745497 prediction 0.582542432661731 Functional Gain - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42821082 chr19:42821086 nonsynonymous SNV 0.341 0 25 hm5C_associated_SNPs_102630 0 0 0 0 2 TMEM145 chr19:42821022 3'AG 42821022 Downstream 65bp
chr19 42821086 42821086 1 + C A MESO 42821082 + 42821062 42821102 41 TACATGACCCTGTACACGCTCACCCATGTGGTGCTGCTCAT TACATGACCCTGTACACGCTCACCAATGTGGTGCTGCTCAT < 41bp 0.362656054762125 0.791271216330866 0.13441315 0.12745497 prediction 0.582542432661731 Functional Gain - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42821082 chr19:42821086 nonsynonymous SNV 0.341 0 25 hm5C_associated_SNPs_102630 0 0 0 0 2 TMEM145 chr19:42821115 5'GT 42821115 Upstream 30bp
chr21 43524057 43524057 1 + C A rs112428028 43524053 + 43524033 43524073 41 GAATGCAGATCGTGTCTCTCCAGGCGGGAAGTGTGGTCGTG GAATGCAGATCGTGTCTCTCCAGGAGGGAAGTGTGGTCGTG < 41bp 0.596961484834935 0.888202812033815 0.9177172 0.8911136 prediction 0.58248265439776 Functional Gain - UMODL1 ENSG00000177398;ENSG00000184385 CDS Human other chr21:43524053 chr21:43524057 nonsynonymous SNV 0.194 3 25 hm5C_associated_SNPs_102631 0 0 0 0 1 UMODL1 chr21:43523978 3'AG 43523978 Downstream 80bp
chr3 119452302 119452302 1 + T A ESCA 119452298 + 119452278 119452318 41 TAAAGTCATTACCACCAAAGCTGGTTTTCTGAAGAGGGCAG TAAAGTCATTACCACCAAAGCTGGATTTCTGAAGAGGGCAG < 41bp 0.53095310604621 0.82218624563659 0.079346806 0.14410537 prediction 0.58246627918076 Functional Gain - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119452298 chr3:119452302 synonymous SNV . 0 25 hm5C_associated_SNPs_102632 0 0 0 0 2 MAATS1 chr3:119452211 3'AG 119452211 Downstream 92bp
chr3 119452302 119452302 1 + T A ESCA 119452298 + 119452278 119452318 41 TAAAGTCATTACCACCAAAGCTGGTTTTCTGAAGAGGGCAG TAAAGTCATTACCACCAAAGCTGGATTTCTGAAGAGGGCAG < 41bp 0.53095310604621 0.82218624563659 0.079346806 0.14410537 prediction 0.58246627918076 Functional Gain - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119452298 chr3:119452302 synonymous SNV . 0 25 hm5C_associated_SNPs_102632 0 0 0 0 2 MAATS1 chr3:119452353 5'GT 119452353 Upstream 52bp
chr6 47624260 47624260 1 + C A COAD 47624256 + 47624236 47624276 41 CCTATGGGAACCGCAGGGTCCAGCCTGGGGAGCTGCCATTC CCTATGGGAACCGCAGGGTCCAGCATGGGGAGCTGCCATTC < 41bp 0.595071004227723 0.886283113557878 0.3639531 0.70359075 prediction 0.582424218660309 Functional Gain - ADGRF2 ENSG00000164393 CDS Human protein_coding chr6:47624256 chr6:47624260 nonsynonymous SNV 0.004 2 25 hm5C_associated_SNPs_102635 0 0 0 0 1 ADGRF2 chr6:47624330 5'GT 47624330 Upstream 71bp
chr6 111493992 111493992 1 + C A PAAD 111493988 + 111493968 111494008 41 ATTTGGTTGTCGGAAAACAGCTGTCGTGGGTGCTGCTGTTG ATTTGGTTGTCGGAAAACAGCTGTAGTGGGTGCTGCTGTTG < 41bp 0.376886718991941 0.791139632361178 0.16240719 0.34894192 prediction 0.582279264722357 Functional Gain - SLC16A10 ENSG00000112394 CDS Human protein_coding chr6:111493988 chr6:111493992 synonymous SNV . 0 25 hm5C_associated_SNPs_102636 0 0 1 0 2 SLC16A10 chr6:111493898 3'AG 111493898 Downstream 95bp
chr6 111493992 111493992 1 + C A PAAD 111493988 + 111493968 111494008 41 ATTTGGTTGTCGGAAAACAGCTGTCGTGGGTGCTGCTGTTG ATTTGGTTGTCGGAAAACAGCTGTAGTGGGTGCTGCTGTTG < 41bp 0.376886718991941 0.791139632361178 0.16240719 0.34894192 prediction 0.582279264722357 Functional Gain - SLC16A10 ENSG00000112394 CDS Human protein_coding chr6:111493988 chr6:111493992 synonymous SNV . 0 25 hm5C_associated_SNPs_102636 0 0 1 0 2 SLC16A10 chr6:111494042 5'GT 111494042 Upstream 51bp
chr19 55597838 55597838 1 + C G BRCA 55597837 + 55597817 55597857 41 CGGCCCCGCTGGGACAGGCCCCGCTGGGACAGCTGCGATAG CGGCCCCGCTGGGACAGGCCCGGCTGGGACAGCTGCGATAG < 41bp 0.502761991362362 0.793854113410428 0.22454575 0.4314265 prediction 0.582184244096132 Functional Gain - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55597837 chr19:55597838 nonsynonymous SNV 0.969 0 22 hm5C_associated_SNPs_102640 0 0 0 0 1 EPS8L1 chr19:55597760 3'AG 55597760 Downstream 79bp
chrX 38533518 38533518 1 + C A BRCA 38533514 + 38533494 38533534 41 GGACTTACACGGACGCTATGCAGACTTACAATGGCAATGAT GGACTTACACGGACGCTATGCAGAATTACAATGGCAATGAT < 41bp 0.388516426900587 0.791061970576773 0.2908675 0.29248285 prediction 0.582123941153545 Functional Gain - TSPAN7 ENSG00000156298;ENSG00000250349 CDS Human other chrX:38533514 chrX:38533518 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_102641 0 0 1 0 1 TSPAN7 chrX:38533475 3'AG 38533475 Downstream 44bp
chr18 76756910 76756910 1 + T A SKCM 76756906 + 76756886 76756926 41 CGCAGGTGCACATGGGGACACACATGTGGAATAACGCCCCC CGCAGGTGCACATGGGGACACACAAGTGGAATAACGCCCCC < 41bp 0.512242105675546 0.803276173353747 0.27342248 0.32549602 prediction 0.582068135356402 Functional Gain - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76756906 chr18:76756910 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102642 0 0 0 0 1 SALL3 chr18:76756891 3'AG 76756891 Downstream 20bp
chr2 1497607 1497607 1 + C A LIHC 1497603 + 1497583 1497623 41 AGTGGAGGGAGTTCTGCGGCCTGCCTCGCCTGGAGACCCCC AGTGGAGGGAGTTCTGCGGCCTGCATCGCCTGGAGACCCCC < 41bp 0.38901104212846 0.791026670077652 0.03206578 0.052941203 prediction 0.582053340155305 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1497603 chr2:1497607 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_102643 0 0 0 0 1 TPO chr2:1497574 3'AG 1497574 Downstream 34bp
chr16 70154529 70154529 1 + T A STAD 70154525 + 70154505 70154545 41 TGGCCCTGCCCACCCAGGCACAGGTGGTCATCTGTGGAGGT TGGCCCTGCCCACCCAGGCACAGGAGGTCATCTGTGGAGGT < 41bp 0.484178002637002 0.791025733111007 0.91178215 0.9196638 prediction 0.582051466222015 Functional Gain - PDPR ENSG00000090857 CDS Human protein_coding chr16:70154525 chr16:70154529 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_102644 0 0 1 0 1 PDPR chr16:70154622 5'GT 70154622 Upstream 94bp
chr4 2632862 2632862 1 + C A LUSC 2632858 + 2632838 2632878 41 AGGAGTACGGCGCCCTCTGCCAGGCCGCACGCTCCATCAGC AGGAGTACGGCGCCCTCTGCCAGGACGCACGCTCCATCAGC < 41bp 0.602913242675818 0.893920338777226 0.46017945 0.5956427 prediction 0.582014192202816 Functional Gain - FAM193A ENSG00000125386 CDS Human protein_coding chr4:2632858 chr4:2632862 nonsynonymous SNV 0.975 4 25 hm5C_associated_SNPs_102646 0 0 0 0 1 FAM193A chr4:2632896 5'GT 2632896 Upstream 35bp
chr19 14694243 14694243 1 + C A LUSC 14694239 + 14694219 14694259 41 CCCTACAAGGACCTTCCTCCCAAGCCAGGTAAGAGGACTTT CCCTACAAGGACCTTCCTCCCAAGACAGGTAAGAGGACTTT < 41bp 0.39880369088909 0.790933780012001 0.3725329 0.41096458 prediction 0.581867560024002 Functional Gain - CLEC17A ENSG00000187912 CDS Human protein_coding chr19:14694239 chr19:14694243 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_102650 0 0 0 0 2 CLEC17A chr19:14694169 3'AG 14694169 Downstream 75bp
chr19 14694243 14694243 1 + C A LUSC 14694239 + 14694219 14694259 41 CCCTACAAGGACCTTCCTCCCAAGCCAGGTAAGAGGACTTT CCCTACAAGGACCTTCCTCCCAAGACAGGTAAGAGGACTTT < 41bp 0.39880369088909 0.790933780012001 0.3725329 0.41096458 prediction 0.581867560024002 Functional Gain - CLEC17A ENSG00000187912 CDS Human protein_coding chr19:14694239 chr19:14694243 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_102650 0 0 0 0 2 CLEC17A chr19:14694246 5'GT 14694246 Upstream 4bp
chr20 3003388 3003388 1 + T G SKCM 3003386 + 3003366 3003406 41 GTCATTGATGCCATGCTGGACATGATGCATACAGAACGGAA GTCATTGATGCCATGCTGGACAGGATGCATACAGAACGGAA < 41bp 0.474769817851637 0.790928570079551 0.13589782 0.25512683 prediction 0.581857140159101 Functional Gain - PTPRA ENSG00000132670 CDS Human protein_coding chr20:3003386 chr20:3003388 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_102651 0 0 1 0 2 PTPRA chr20:3003335 3'AG 3003335 Downstream 54bp
chr20 3003388 3003388 1 + T G SKCM 3003386 + 3003366 3003406 41 GTCATTGATGCCATGCTGGACATGATGCATACAGAACGGAA GTCATTGATGCCATGCTGGACAGGATGCATACAGAACGGAA < 41bp 0.474769817851637 0.790928570079551 0.13589782 0.25512683 prediction 0.581857140159101 Functional Gain - PTPRA ENSG00000132670 CDS Human protein_coding chr20:3003386 chr20:3003388 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_102651 0 0 1 0 2 PTPRA chr20:3003470 5'GT 3003470 Upstream 83bp
chr3 160939141 160939141 1 + C A rs28384382 160939137 + 160939117 160939157 41 CAGGTTGGCAGCTGACGGGACAGCCGGGGTCTATTTTGTTG CAGGTTGGCAGCTGACGGGACAGCAGGGGTCTATTTTGTTG < 41bp 0.458612356885044 0.790912853314295 0.31691232 0.5401662 prediction 0.58182570662859 Functional Gain - NMD3 ENSG00000169251 UTR5 Human protein_coding chr3:160939137 chr3:160939141 . . 0 25 hm5C_associated_SNPs_102653 0 0 1 0 1 NMD3 chr3:160939197 5'GT 160939197 Upstream 57bp
chr14 39817997 39817997 1 + C A OV 39817993 + 39817973 39818013 41 CCCTGCTGAAAATGAAGCCACTGGCCCTGGCTTTGTTCCTC CCCTGCTGAAAATGAAGCCACTGGACCTGGCTTTGTTCCTC < 41bp 0.407687681454726 0.790898211978126 0.13335371 0.32663044 prediction 0.581796423956253 Functional Gain - MIA2 ENSG00000150527;ENSG00000258941 CDS Human other chr14:39817993 chr14:39817997 synonymous SNV . 0 25 hm5C_associated_SNPs_102654 0 0 0 0 1 MIA2 chr14:39817947 3'AG 39817947 Downstream 51bp
chr11 94040634 94040634 1 + C A LUAD 94040630 + 94040610 94040650 41 GGGGCCCAGTGCCTCCCTTTCTCCCATTACTTCCCCACCCC GGGGCCCAGTGCCTCCCTTTCTCCAATTACTTCCCCACCCC < 41bp 0.627057712905243 0.917941132506627 0.37914902 0.95634055 prediction 0.581766839202768 Functional Gain - IZUMO1R ENSG00000183560 CDS Human protein_coding chr11:94040630 chr11:94040634 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_102656 0 0 0 0 1 IZUMO1R chr11:94040590 3'AG 94040590 Downstream 45bp
chr11 89885630 89885630 1 + C A LUSC 89885626 + 89885606 89885646 41 TTTGAATGGTGCTGGTGACCCACTCACTCCAGGCTATCCAG TTTGAATGGTGCTGGTGACCCACTAACTCCAGGCTATCCAG < 41bp 0.384335793242418 0.790880786916209 0.074855596 0.10037041 prediction 0.581761573832418 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89885626 chr11:89885630 synonymous SNV . 0 25 hm5C_associated_SNPs_102657 0 0 1 0 1 NAALAD2 chr11:89885652 5'GT 89885652 Upstream 23bp
chr19 42791743 42791743 1 + T G LGG 42791741 + 42791721 42791761 41 CCCATGAATGCCTTCATGATCTTCAGCAAGCGGCACCGGGC CCCATGAATGCCTTCATGATCTGCAGCAAGCGGCACCGGGC < 41bp 0.54695095095847 0.837804279547505 0.25644362 0.38889787 prediction 0.58170665717807 Functional Gain - CIC ENSG00000079432 CDS Human protein_coding chr19:42791741 chr19:42791743 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_102658 0 0 1 0 1 CIC chr19:42791697 3'AG 42791697 Downstream 47bp
chrX 102471104 102471104 1 + C A HNSC 102471100 + 102471080 102471120 41 TAATGGAGTCCAAAGAGGAACTAGCGGCAAACAATCTCAAC TAATGGAGTCCAAAGAGGAACTAGAGGCAAACAATCTCAAC < 41bp 0.594453143889217 0.885283137379909 0.08825478 0.30972332 prediction 0.581659986981385 Functional Gain - BEX4 ENSG00000102409 CDS Human protein_coding chrX:102471100 chrX:102471104 nonsynonymous SNV 0.079 1 25 hm5C_associated_SNPs_102660 0 0 1 0 1 BEX4 chrX:102471077 3'AG 102471077 Downstream 28bp
chr16 3554821 3554821 1 + C A UCEC 3554817 + 3554797 3554837 41 CTTGTATCTGAAGTGCTTCTCTGGCTTGTGAAAAGGTTCGA CTTGTATCTGAAGTGCTTCTCTGGATTGTGAAAAGGTTCGA < 41bp 0.390675941086532 0.790814287964238 0.17223722 0.28377092 prediction 0.581628575928477 Functional Gain - CLUAP1 ENSG00000103351 CDS Human protein_coding chr16:3554817 chr16:3554821 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102661 0 0 0 0 1 CLUAP1 chr16:3554831 5'GT 3554831 Upstream 11bp
chr8 97285595 97285595 1 + T G UCEC 97285593 + 97285573 97285613 41 GTTATTTTCTTCTTTCTTATCATCAGTGTGTTAGCTTTCCC GTTATTTTCTTCTTTCTTATCAGCAGTGTGTTAGCTTTCCC < 41bp 0.541570132600481 0.832373982149246 0.19980958 0.636396 prediction 0.581607699097529 Functional Gain - PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97285593 chr8:97285595 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_102662 0 0 1 0 2 PTDSS1 chr8:97285527 3'AG 97285527 Downstream 69bp
chr8 97285595 97285595 1 + T G UCEC 97285593 + 97285573 97285613 41 GTTATTTTCTTCTTTCTTATCATCAGTGTGTTAGCTTTCCC GTTATTTTCTTCTTTCTTATCAGCAGTGTGTTAGCTTTCCC < 41bp 0.541570132600481 0.832373982149246 0.19980958 0.636396 prediction 0.581607699097529 Functional Gain - PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97285593 chr8:97285595 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_102662 0 0 1 0 2 PTDSS1 chr8:97285618 5'GT 97285618 Upstream 24bp
chr12 65672591 65672591 1 + C A CESC 65672587 + 65672567 65672607 41 CTCCCGCGCCCCCTCTCGCTCTGCCTCTCCCTCTGCCTCTG CTCCCGCGCCCCCTCTCGCTCTGCATCTCCCTCTGCCTCTG < 41bp 0.59186458006176 0.882664538985599 0.27014887 0.15843794 prediction 0.581599917847679 Functional Gain - MSRB3 ENSG00000174099 CDS Human protein_coding chr12:65672587 chr12:65672591 nonsynonymous SNV 0.545 0 25 hm5C_associated_SNPs_102663 0 0 1 0 1 MSRB3 chr12:65672645 5'GT 65672645 Upstream 55bp
chr16 57732892 57732892 1 + C G LUSC 57732891 + 57732871 57732911 41 TACAGCCATCTGTGCCCGGACCGCGTGCCCCTCTTCCTGCA TACAGCCATCTGTGCCCGGACGGCGTGCCCCTCTTCCTGCA < 41bp 0.476638012141732 0.790751276236552 0.34959483 0.67873245 prediction 0.581502552473104 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57732891 chr16:57732892 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_102667 0 0 0 0 1 DRC7 chr16:57732936 5'GT 57732936 Upstream 45bp
chr20 39984614 39984614 1 + C A UCEC 39984610 + 39984590 39984630 41 CCTGGAGATCCCCTCCTTGCCACCCTCCACTCCACCCTCCA CCTGGAGATCCCCTCCTTGCCACCATCCACTCCACCCTCCA < 41bp 0.362863318571995 0.790690353319896 0.003459543 0.0025821924 prediction 0.581380706639792 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39984610 chr20:39984614 synonymous SNV . 0 25 hm5C_associated_SNPs_102671 0 0 1 0 2 LPIN3 chr20:39984536 3'AG 39984536 Downstream 79bp
chr20 39984614 39984614 1 + C A UCEC 39984610 + 39984590 39984630 41 CCTGGAGATCCCCTCCTTGCCACCCTCCACTCCACCCTCCA CCTGGAGATCCCCTCCTTGCCACCATCCACTCCACCCTCCA < 41bp 0.362863318571995 0.790690353319896 0.003459543 0.0025821924 prediction 0.581380706639792 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39984610 chr20:39984614 synonymous SNV . 0 25 hm5C_associated_SNPs_102671 0 0 1 0 2 LPIN3 chr20:39984674 5'GT 39984674 Upstream 61bp
chr7 100390118 100390118 1 + C A LUSC 100390114 + 100390094 100390134 41 CTCAGTGGGTACGCCATCCTCTGCCAGGAGGCGGGCGCTGC CTCAGTGGGTACGCCATCCTCTGCAAGGAGGCGGGCGCTGC < 41bp 0.42414166737508 0.790681812282527 0.31652927 0.9133004 prediction 0.581363624565055 Functional Gain - ZAN ENSG00000146839 CDS Human protein_coding chr7:100390114 chr7:100390118 nonsynonymous SNV 0.870 2 25 hm5C_associated_SNPs_102672 0 0 0 0 2 ZAN chr7:100390027 3'AG 100390027 Downstream 92bp
chr7 100390118 100390118 1 + C A LUSC 100390114 + 100390094 100390134 41 CTCAGTGGGTACGCCATCCTCTGCCAGGAGGCGGGCGCTGC CTCAGTGGGTACGCCATCCTCTGCAAGGAGGCGGGCGCTGC < 41bp 0.42414166737508 0.790681812282527 0.31652927 0.9133004 prediction 0.581363624565055 Functional Gain - ZAN ENSG00000146839 CDS Human protein_coding chr7:100390114 chr7:100390118 nonsynonymous SNV 0.870 2 25 hm5C_associated_SNPs_102672 0 0 0 0 2 ZAN chr7:100390166 5'GT 100390166 Upstream 49bp
chr1 196749016 196749016 1 + C A LUAD 196749012 + 196748992 196749032 41 GGTAACTCTACAGAAGTTGCCTGCCATCCTGGCTACGGTCT GGTAACTCTACAGAAGTTGCCTGCAATCCTGGCTACGGTCT < 41bp 0.40287315408569 0.790653496296965 0.088661075 0.10127169 prediction 0.581306992593929 Functional Gain - CFHR3 ENSG00000116785 CDS Human protein_coding chr1:196749012 chr1:196749016 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_102673 0 0 0 0 2 CFHR3 chr1:196748927 3'AG 196748927 Downstream 90bp
chr1 196749016 196749016 1 + C A LUAD 196749012 + 196748992 196749032 41 GGTAACTCTACAGAAGTTGCCTGCCATCCTGGCTACGGTCT GGTAACTCTACAGAAGTTGCCTGCAATCCTGGCTACGGTCT < 41bp 0.40287315408569 0.790653496296965 0.088661075 0.10127169 prediction 0.581306992593929 Functional Gain - CFHR3 ENSG00000116785 CDS Human protein_coding chr1:196749012 chr1:196749016 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_102673 0 0 0 0 2 CFHR3 chr1:196749103 5'GT 196749103 Upstream 88bp
chr2 54886356 54886356 1 + C A SKCM 54886352 + 54886332 54886372 41 GAGGAAGAGGCGGCCGCCTTCTCCCGAGCCGAGCACGAAGG GAGGAAGAGGCGGCCGCCTTCTCCAGAGCCGAGCACGAAGG < 41bp 0.37813385256974 0.790616016986379 0.20344141 0.93690604 prediction 0.581232033972757 Functional Gain - SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54886352 chr2:54886356 synonymous SNV . 0 25 hm5C_associated_SNPs_102678 0 0 1 0 2 SPTBN1 chr2:54886291 3'AG 54886291 Downstream 66bp
chr2 54886356 54886356 1 + C A SKCM 54886352 + 54886332 54886372 41 GAGGAAGAGGCGGCCGCCTTCTCCCGAGCCGAGCACGAAGG GAGGAAGAGGCGGCCGCCTTCTCCAGAGCCGAGCACGAAGG < 41bp 0.37813385256974 0.790616016986379 0.20344141 0.93690604 prediction 0.581232033972757 Functional Gain - SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54886352 chr2:54886356 synonymous SNV . 0 25 hm5C_associated_SNPs_102678 0 0 1 0 2 SPTBN1 chr2:54886403 5'GT 54886403 Upstream 48bp
chr15 81440758 81440758 1 + T G LUAD 81440755 + 81440735 81440775 41 GAGTTGAGAAACCAAGGAACCACTGGATGTTGGTTACTGGG GAGTTGAGAAACCAAGGAACCACGGGATGTTGGTTACTGGG < 41bp 0.41772705714811 0.790609144306829 0.29951102 0.41974512 prediction 0.581218288613658 Functional Gain - CFAP161 ENSG00000156206 CDS Human protein_coding chr15:81440755 chr15:81440758 nonsynonymous SNV 0.809 4 24 hm5C_associated_SNPs_102679 0 0 0 0 1 CFAP161 chr15:81440679 3'AG 81440679 Downstream 80bp
chrX 23929925 23929925 1 + T A UCEC 23929921 + 23929901 23929941 41 AATACAGAGGGCTTGGTTATCTCATACAAACAAAATGATAT AATACAGAGGGCTTGGTTATCTCAAACAAACAAAATGATAT < 41bp 0.47880471046596 0.79054174849112 0.33900353 0.77595794 prediction 0.581083496982241 Functional Gain - CXorf58 ENSG00000165182 CDS Human protein_coding chrX:23929921 chrX:23929925 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_102684 0 0 0 0 2 CXorf58 chrX:23929874 3'AG 23929874 Downstream 52bp
chrX 23929925 23929925 1 + T A UCEC 23929921 + 23929901 23929941 41 AATACAGAGGGCTTGGTTATCTCATACAAACAAAATGATAT AATACAGAGGGCTTGGTTATCTCAAACAAACAAAATGATAT < 41bp 0.47880471046596 0.79054174849112 0.33900353 0.77595794 prediction 0.581083496982241 Functional Gain - CXorf58 ENSG00000165182 CDS Human protein_coding chrX:23929921 chrX:23929925 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_102684 0 0 0 0 2 CXorf58 chrX:23929973 5'GT 23929973 Upstream 49bp
chr18 2573020 2573020 1 + C A THCA 2573016 + 2572996 2573036 41 TTCAGTTTCCAGCGGTGGTGCTGGCCGCCTCTCCATGCAGG TTCAGTTTCCAGCGGTGGTGCTGGACGCCTCTCCATGCAGG < 41bp 0.606314131550617 0.896846355729383 0.025501758 0.114085466 prediction 0.581064448357533 Functional Gain - NDC80 ENSG00000080986 CDS Human protein_coding chr18:2573016 chr18:2573020 synonymous SNV . 0 25 hm5C_associated_SNPs_102685 0 0 1 0 2 NDC80 chr18:2572976 3'AG 2572976 Downstream 45bp
chr18 2573020 2573020 1 + C A THCA 2573016 + 2572996 2573036 41 TTCAGTTTCCAGCGGTGGTGCTGGCCGCCTCTCCATGCAGG TTCAGTTTCCAGCGGTGGTGCTGGACGCCTCTCCATGCAGG < 41bp 0.606314131550617 0.896846355729383 0.025501758 0.114085466 prediction 0.581064448357533 Functional Gain - NDC80 ENSG00000080986 CDS Human protein_coding chr18:2573016 chr18:2573020 synonymous SNV . 0 25 hm5C_associated_SNPs_102685 0 0 1 0 2 NDC80 chr18:2573085 5'GT 2573085 Upstream 66bp
chr1 16975289 16975289 1 + T A BRCA 16975285 + 16975265 16975305 41 CCATCAATCCTGGACCCCCCCAGGTTAGGAGTTGGGCCAGT CCATCAATCCTGGACCCCCCCAGGATAGGAGTTGGGCCAGT < 41bp 0.505969564726351 0.796489633432926 0.52961844 0.44047135 prediction 0.58104013741315 Functional Gain - MST1P2 ENSG00000186301 ncRNA_splicing Human unprocessed_pseudogene chr1:16975285 chr1:16975289 . . 0 25 hm5C_associated_SNPs_102688 0 0 0 0 1 MST1P2 chr1:16975251 3'AG 16975251 Downstream 39bp
chr3 157289088 157289088 1 + C A SARC 157289084 + 157289064 157289104 41 GCTGCTACCTGACTAACCAACTGCCTATTCAGGTAAAAGTT GCTGCTACCTGACTAACCAACTGCATATTCAGGTAAAAGTT < 41bp 0.378644905032318 0.790508784845359 0.39021122 0.5416651 prediction 0.581017569690718 Functional Gain - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157289084 chr3:157289088 nonsynonymous SNV 0.145 1 25 hm5C_associated_SNPs_102690 0 0 0 1 1 PQLC2L chr3:157289095 5'GT 157289095 Upstream 8bp
chr12 56732989 56732989 1 + T A SARC 56732985 + 56732965 56733005 41 GTGCACATCCACTAGTGGGACACATGGTGAGTGGCAGCCCC GTGCACATCCACTAGTGGGACACAAGGTGAGTGGCAGCCCC < 41bp 0.515878605009969 0.806386801708513 0.30571413 0.2508176 prediction 0.581016393397088 Functional Gain - IL23A ENSG00000110944 CDS Human protein_coding chr12:56732985 chr12:56732989 nonsynonymous SNV 0.943 1 25 hm5C_associated_SNPs_102691 0 0 0 0 1 IL23A chr12:56732990 5'GT 56732990 Upstream 2bp
chr3 183823930 183823930 1 + C A UCEC 183823926 + 183823906 183823946 41 TTCCCTCCAGGTGTCTACTTCGCCCTGTGCCTGTCCCTGAT TTCCCTCCAGGTGTCTACTTCGCCATGTGCCTGTCCCTGAT < 41bp 0.619172301224721 0.909677425642236 0.19544056 0.8029435 prediction 0.58101024883503 Functional Gain - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183823926 chr3:183823930 nonsynonymous SNV 0.457 4 25 hm5C_associated_SNPs_102692 0 0 0 0 1 HTR3E chr3:183823916 3'AG 183823916 Downstream 15bp
chr8 22459493 22459493 1 + C A rs73549908 22459489 + 22459469 22459509 41 TCTCTCCTGTGCATAGGATCCCGGCGAGGAGGAGTCGACCC TCTCTCCTGTGCATAGGATCCCGGAGAGGAGGAGTCGACCC < 41bp 0.599809742260794 0.890311873325531 0.40014875 0.75271297 prediction 0.581004262129472 Functional Gain - C8orf58 ENSG00000241852;ENSG00000248235 CDS Human other chr8:22459489 chr8:22459493 synonymous SNV . 0 25 hm5C_associated_SNPs_102693 0 0 0 0 1 C8orf58 chr8:22459485 3'AG 22459485 Downstream 9bp
chr7 29943929 29943929 1 + C A rs140535643 29943925 + 29943905 29943945 41 GTACACCTGGTCCCTGGCTCCAAGCGGAAGCAGTCGGGCAG GTACACCTGGTCCCTGGCTCCAAGAGGAAGCAGTCGGGCAG < 41bp 0.397367165933294 0.790494400966251 0.52524054 0.76744866 prediction 0.580988801932501 Functional Gain - WIPF3 ENSG00000122574 CDS Human protein_coding chr7:29943925 chr7:29943929 nonsynonymous SNV 0.066 2 25 hm5C_associated_SNPs_102694 0 0 0 0 2 WIPF3 chr7:29943902 3'AG 29943902 Downstream 28bp
chr7 29943929 29943929 1 + C A rs140535643 29943925 + 29943905 29943945 41 GTACACCTGGTCCCTGGCTCCAAGCGGAAGCAGTCGGGCAG GTACACCTGGTCCCTGGCTCCAAGAGGAAGCAGTCGGGCAG < 41bp 0.397367165933294 0.790494400966251 0.52524054 0.76744866 prediction 0.580988801932501 Functional Gain - WIPF3 ENSG00000122574 CDS Human protein_coding chr7:29943925 chr7:29943929 nonsynonymous SNV 0.066 2 25 hm5C_associated_SNPs_102694 0 0 0 0 2 WIPF3 chr7:29943978 5'GT 29943978 Upstream 50bp
chr3 105266005 105266005 1 + C A UCEC 105266001 + 105265981 105266021 41 TTATTTAATCAGGATAACATCAGGCTTCGATCTAGCCCGTC TTATTTAATCAGGATAACATCAGGATTCGATCTAGCCCGTC < 41bp 0.411931274175448 0.790492381674685 0.3169809 0.2622209 prediction 0.58098476334937 Functional Gain - ALCAM ENSG00000170017 CDS Human protein_coding chr3:105266001 chr3:105266005 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_102696 0 0 0 0 1 ALCAM chr3:105265993 3'AG 105265993 Downstream 13bp
chr1 150954809 150954809 1 + C A rs146656705 150954805 + 150954785 150954825 41 GGAGGCAGTGCTCACACAGGCAAGCTACCAGGCCACAACAA GGAGGCAGTGCTCACACAGGCAAGATACCAGGCCACAACAA < 41bp 0.513494709656805 0.803964800668467 0.20991656 0.30757886 prediction 0.580940182023325 Functional Gain - ANXA9 ENSG00000143412 UTR5 Human protein_coding chr1:150954805 chr1:150954809 . . 0 25 hm5C_associated_SNPs_102698 0 0 0 0 1 ANXA9 chr1:150954855 5'GT 150954855 Upstream 47bp
chr9 116116596 116116596 1 + C A HNSC 116116592 + 116116572 116116612 41 CCAAGTATGTGGCGGACGTCCTGCCGGGGAAGAATCAAAGA CCAAGTATGTGGCGGACGTCCTGCAGGGGAAGAATCAAAGA < 41bp 0.628215392184558 0.918673040962296 0.33030996 0.49814662 prediction 0.580915297555476 Functional Gain - BSPRY ENSG00000119411 CDS Human protein_coding chr9:116116592 chr9:116116596 nonsynonymous SNV 0.975 0 25 hm5C_associated_SNPs_102699 0 0 0 0 2 BSPRY chr9:116116520 3'AG 116116520 Downstream 77bp
chr9 116116596 116116596 1 + C A HNSC 116116592 + 116116572 116116612 41 CCAAGTATGTGGCGGACGTCCTGCCGGGGAAGAATCAAAGA CCAAGTATGTGGCGGACGTCCTGCAGGGGAAGAATCAAAGA < 41bp 0.628215392184558 0.918673040962296 0.33030996 0.49814662 prediction 0.580915297555476 Functional Gain - BSPRY ENSG00000119411 CDS Human protein_coding chr9:116116592 chr9:116116596 nonsynonymous SNV 0.975 0 25 hm5C_associated_SNPs_102699 0 0 0 0 2 BSPRY chr9:116116618 5'GT 116116618 Upstream 23bp
chrX 48368317 48368317 1 + C A UCEC 48368313 + 48368293 48368333 41 ATCTGGCTGCTCCTTGCCATCTGCCTCGCCTGCCGCCTCCT ATCTGGCTGCTCCTTGCCATCTGCATCGCCTGCCGCCTCCT < 41bp 0.609107411460978 0.899556622149692 0.16442782 0.17404842 prediction 0.580898421377428 Functional Gain - PORCN ENSG00000102312 CDS Human protein_coding chrX:48368313 chrX:48368317 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_102702 0 0 0 0 1 PORCN chrX:48368344 5'GT 48368344 Upstream 28bp
chr13 28494600 28494600 1 + C A LUSC 28494596 + 28494576 28494616 41 CCGGAGGGAGCCGAGCCGGGCGTCCTGGAGGAGCCCAACCG CCGGAGGGAGCCGAGCCGGGCGTCATGGAGGAGCCCAACCG < 41bp 0.415509802194545 0.79042116682454 0.7724203 0.8870907 prediction 0.580842333649079 Functional Gain - PDX1 ENSG00000139515 CDS Human protein_coding chr13:28494596 chr13:28494600 nonsynonymous SNV 0.133 1 25 hm5C_associated_SNPs_102704 0 0 1 0 1 PDX1 chr13:28494681 5'GT 28494681 Upstream 82bp
chr11 64360971 64360971 1 + C A UCEC 64360967 + 64360947 64360987 41 GCCCCTGCCTTCCCCGTGTACTGCCTGTTCCGCTTCCTGTT GCCCCTGCCTTCCCCGTGTACTGCATGTTCCGCTTCCTGTT < 41bp 0.376178196202239 0.790402605529091 0.29156104 0.21964014 prediction 0.580805211058182 Functional Gain - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64360967 chr11:64360971 nonsynonymous SNV 0.747 2 25 hm5C_associated_SNPs_102706 0 0 0 0 1 SLC22A12 chr11:64361031 5'GT 64361031 Upstream 61bp
chr17 38133123 38133123 1 + C A LAML 38133119 + 38133099 38133139 41 CTGGATAAAGAGGGTGTTTTCCCCCTGCAACCTGAGCTGCT CTGGATAAAGAGGGTGTTTTCCCCATGCAACCTGAGCTGCT < 41bp 0.391456251033362 0.790365612409803 0.56150675 0.8150962 prediction 0.580731224819605 Functional Gain - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38133119 chr17:38133123 nonsynonymous SNV 0.910 3 25 hm5C_associated_SNPs_102709 0 0 0 0 1 GSDMA chr17:38133069 3'AG 38133069 Downstream 55bp
chr13 37011840 37011840 1 + C A UCEC 37011836 + 37011816 37011856 41 AGCTGGAAAGAAAGCACTCCCTGACTGTGGGGTCCAAGAGC AGCTGGAAAGAAAGCACTCCCTGAATGTGGGGTCCAAGAGC < 41bp 0.371759644036841 0.79034738982085 0.009052217 0.09807545 prediction 0.5806947796417 Functional Gain - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37011836 chr13:37011840 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_102712 0 0 0 0 1 CCNA1 chr13:37011766 3'AG 37011766 Downstream 75bp
chr10 70496747 70496747 1 + T A OV 70496743 + 70496723 70496763 41 CACAAACTCCAGCAAACTATCAGTTAACACAAACTGCTGCA CACAAACTCCAGCAAACTATCAGTAAACACAAACTGCTGCA < 41bp 0.483372464571395 0.790326788302505 0.13467339 0.09543958 prediction 0.580653576605011 Functional Gain - CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70496743 chr10:70496747 stopgain 1.000 1 25 hm5C_associated_SNPs_102716 0 0 1 0 1 CCAR1 chr10:70496805 5'GT 70496805 Upstream 59bp
chr13 114290383 114290383 1 + C A UCEC 114290379 + 114290359 114290399 41 CACCCAACTCAGTCATCCACCTGCCCTTCATCATCGTCAAC CACCCAACTCAGTCATCCACCTGCACTTCATCATCGTCAAC < 41bp 0.369646477877394 0.790288251210802 0.012647271 0.02203545 prediction 0.580576502421605 Functional Gain - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114290379 chr13:114290383 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102717 0 0 1 0 2 TFDP1 chr13:114290292 3'AG 114290292 Downstream 92bp
chr13 114290383 114290383 1 + C A UCEC 114290379 + 114290359 114290399 41 CACCCAACTCAGTCATCCACCTGCCCTTCATCATCGTCAAC CACCCAACTCAGTCATCCACCTGCACTTCATCATCGTCAAC < 41bp 0.369646477877394 0.790288251210802 0.012647271 0.02203545 prediction 0.580576502421605 Functional Gain - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114290379 chr13:114290383 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102717 0 0 1 0 2 TFDP1 chr13:114290443 5'GT 114290443 Upstream 61bp
chr11 551768 551768 1 + C A rs143185074 551764 + 551744 551784 41 TGCTGGTCCGTGGGGGCCCCCTGCCTGAAGGCCTGCTTTCT TGCTGGTCCGTGGGGGCCCCCTGCATGAAGGCCTGCTTTCT < 41bp 0.386496335935221 0.790277738147631 0.14592376 0.7851112 prediction 0.580555476295262 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:551764 chr11:551768 nonsynonymous SNV 0.015 1 25 hm5C_associated_SNPs_102718 0 0 0 0 1 LRRC56 chr11:551827 5'GT 551827 Upstream 60bp
chr2 99802708 99802708 1 + C A ESCA 99802704 + 99802684 99802724 41 CTTAGTAGTTCAATGGCCCCCAGGCAGACTACAGGTAAGTG CTTAGTAGTTCAATGGCCCCCAGGAAGACTACAGGTAAGTG < 41bp 0.407809729748931 0.790276776305507 0.08319563 0.08226898 prediction 0.580553552611015 Functional Gain - MRPL30 ENSG00000185414;ENSG00000241962;ENSG00000273155 CDS Human protein_coding chr2:99802704 chr2:99802708 synonymous SNV . 0 25 hm5C_associated_SNPs_102719 0 0 1 3 2 MRPL30 chr2:99802640 3'AG 99802640 Downstream 69bp
chr2 99802708 99802708 1 + C A ESCA 99802704 + 99802684 99802724 41 CTTAGTAGTTCAATGGCCCCCAGGCAGACTACAGGTAAGTG CTTAGTAGTTCAATGGCCCCCAGGAAGACTACAGGTAAGTG < 41bp 0.407809729748931 0.790276776305507 0.08319563 0.08226898 prediction 0.580553552611015 Functional Gain - MRPL30 ENSG00000185414;ENSG00000241962;ENSG00000273155 CDS Human other chr2:99802704 chr2:99802708 synonymous SNV . 0 25 hm5C_associated_SNPs_102719 0 0 1 3 2 MRPL30 chr2:99802717 5'GT 99802717 Upstream 10bp
chr22 21475925 21475925 1 - G T rs4822947 21475929 - 21475909 21475949 41 GCCAGGACAAGGGAGCCCACCGGGCCCAGATAGGTACAGAG GCCAGGACAAGGGAGCCCACCGGGACCAGATAGGTACAGAG < 41bp 0.570254460301145 0.860519964187034 0.43369615 0.7038399 prediction 0.580531007771779 Functional Gain - BCRP2 ENSG00000169668 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:21475929 chr22:21475925 . . 0 25 hm5C_associated_SNPs_102721 0 0 0 0 1 BCRP2 chr22:21475917 5'GT 21475917 Upstream 9bp
chr17 7577517 7577517 1 - A C BRCA 7577519 - 7577499 7577539 41 CGGAGGCCCATCCTCACCATCATCACACTGGAAGACTCCAG CGGAGGCCCATCCTCACCATCAGCACACTGGAAGACTCCAG < 41bp 0.49805307380652 0.790234378190027 0.07379457 0.17679352 prediction 0.580468756380053 Functional Gain - TP53 ENSG00000141510 CDS Human protein_coding chr17:7577519 chr17:7577517 nonsynonymous SNV 0.970 5 23 hm5C_associated_SNPs_102724 7 0 1 0 1 TP53 chr17:7577608 3'AG 7577608 Downstream 92bp
chr16 75611255 75611255 1 + T G UCEC 75611252 + 75611232 75611272 41 GTGGCCTACAGCGGAGAGAACACTTTTGGCTTCTGAGGGCC GTGGCCTACAGCGGAGAGAACACGTTTGGCTTCTGAGGGCC < 41bp 0.418314340351291 0.790214838807525 0.35982525 0.4264105 prediction 0.580429677615049 Functional Gain - GABARAPL2 ENSG00000034713 CDS Human protein_coding chr16:75611252 chr16:75611255 synonymous SNV . 0 24 hm5C_associated_SNPs_102726 0 0 1 1 1 GABARAPL2 chr16:75611177 3'AG 75611177 Downstream 79bp
chr20 42969881 42969881 1 + C G LUAD 42969880 + 42969860 42969900 41 GCTGCCGAAGCCTGGGCCACCCAGTGCATCTGGGCACATGG GCTGCCGAAGCCTGGGCCACCGAGTGCATCTGGGCACATGG < 41bp 0.487211351310788 0.790189957363744 0.088758856 0.6979695 prediction 0.580379914727487 Functional Gain - R3HDML ENSG00000101074 CDS Human protein_coding chr20:42969880 chr20:42969881 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_102728 0 0 0 0 2 R3HDML chr20:42969836 3'AG 42969836 Downstream 46bp
chr20 42969881 42969881 1 + C G LUAD 42969880 + 42969860 42969900 41 GCTGCCGAAGCCTGGGCCACCCAGTGCATCTGGGCACATGG GCTGCCGAAGCCTGGGCCACCGAGTGCATCTGGGCACATGG < 41bp 0.487211351310788 0.790189957363744 0.088758856 0.6979695 prediction 0.580379914727487 Functional Gain - R3HDML ENSG00000101074 CDS Human protein_coding chr20:42969880 chr20:42969881 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_102728 0 0 0 0 2 R3HDML chr20:42969954 5'GT 42969954 Upstream 74bp
chr16 28601750 28601750 1 + C A COAD 28601746 + 28601726 28601766 41 CTGGCCGAGGTGGTCAGTTACAGCCATGCCACCAACAAGTG CTGGCCGAGGTGGTCAGTTACAGCAATGCCACCAACAAGTG < 41bp 0.622370776336247 0.912523269835557 0.6237036 0.7586142 prediction 0.580304986998619 Functional Gain - SGF29 ENSG00000176476 CDS Human protein_coding chr16:28601746 chr16:28601750 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_102731 0 0 1 0 1 SGF29 chr16:28601763 5'GT 28601763 Upstream 14bp
chr11 88961080 88961080 1 + C G LGG 88961079 + 88961059 88961099 41 TATATGAATGGAACAATGTCCCAGGTACAGGGATCTGCCAA TATATGAATGGAACAATGTCCGAGGTACAGGGATCTGCCAA < 41bp 0.507576140903642 0.797625622040886 0.5853413 0.83187807 prediction 0.580098962274488 Functional Gain - TYR ENSG00000077498 CDS Human protein_coding chr11:88961079 chr11:88961080 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_102735 0 0 0 0 2 TYR chr11:88960991 3'AG 88960991 Downstream 90bp
chr11 88961080 88961080 1 + C G LGG 88961079 + 88961059 88961099 41 TATATGAATGGAACAATGTCCCAGGTACAGGGATCTGCCAA TATATGAATGGAACAATGTCCGAGGTACAGGGATCTGCCAA < 41bp 0.507576140903642 0.797625622040886 0.5853413 0.83187807 prediction 0.580098962274488 Functional Gain - TYR ENSG00000077498 CDS Human protein_coding chr11:88961079 chr11:88961080 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_102735 0 0 0 0 2 TYR chr11:88961138 5'GT 88961138 Upstream 59bp
chr5 75948620 75948620 1 + C A rs35366349 75948616 + 75948596 75948636 41 CAACGGAAGGAGTATATGCACAGGCGGCAAACGTTCATTGA CAACGGAAGGAGTATATGCACAGGAGGCAAACGTTCATTGA < 41bp 0.414029510266377 0.790036856216551 0.3005861 0.36422324 prediction 0.580073712433102 Functional Gain - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75948616 chr5:75948620 synonymous SNV . 0 25 hm5C_associated_SNPs_102738 0 0 1 0 2 IQGAP2 chr5:75948575 3'AG 75948575 Downstream 46bp
chr5 75948620 75948620 1 + C A rs35366349 75948616 + 75948596 75948636 41 CAACGGAAGGAGTATATGCACAGGCGGCAAACGTTCATTGA CAACGGAAGGAGTATATGCACAGGAGGCAAACGTTCATTGA < 41bp 0.414029510266377 0.790036856216551 0.3005861 0.36422324 prediction 0.580073712433102 Functional Gain - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75948616 chr5:75948620 synonymous SNV . 0 25 hm5C_associated_SNPs_102738 0 0 1 0 2 IQGAP2 chr5:75948658 5'GT 75948658 Upstream 39bp
chr5 1217016 1217016 1 + C A LUSC 1217012 + 1216992 1217032 41 GCCTCCGACCCCGCGGCCTACGCGCAGCTGGTGTTCCAGAC GCCTCCGACCCCGCGGCCTACGCGAAGCTGGTGTTCCAGAC < 41bp 0.625437222135869 0.915462143226372 0.060514152 0.16921374 prediction 0.580049842181006 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1217012 chr5:1217016 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_102739 0 0 0 0 1 SLC6A19 chr5:1217060 5'GT 1217060 Upstream 45bp
chr12 111342586 111342586 1 + T A rs142416969 111342582 + 111342562 111342602 41 GGGGCTGACCCCTTCAGCGACAGGTTGGATGATGGTGAGTT GGGGCTGACCCCTTCAGCGACAGGATGGATGATGGTGAGTT < 41bp 0.489048243437248 0.789993409074754 0.20075965 0.3413492 prediction 0.579986818149508 Functional Gain - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111342582 chr12:111342586 nonsynonymous SNV 0.040 1 25 hm5C_associated_SNPs_102740 0 0 0 0 1 CCDC63 chr12:111342595 5'GT 111342595 Upstream 10bp
chr2 47251485 47251485 1 + C A LAML 47251481 + 47251461 47251501 41 TCCTCTATGTCTCGCTGCAGCTGGCCCTCGTCCGACAGGTG TCCTCTATGTCTCGCTGCAGCTGGACCTCGTCCGACAGGTG < 41bp 0.386082868417174 0.789879823452335 0.17080331 0.2909341 prediction 0.579759646904671 Functional Gain - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47251481 chr2:47251485 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_102744 0 0 0 0 2 TTC7A chr2:47251426 3'AG 47251426 Downstream 60bp
chr2 47251485 47251485 1 + C A LAML 47251481 + 47251461 47251501 41 TCCTCTATGTCTCGCTGCAGCTGGCCCTCGTCCGACAGGTG TCCTCTATGTCTCGCTGCAGCTGGACCTCGTCCGACAGGTG < 41bp 0.386082868417174 0.789879823452335 0.17080331 0.2909341 prediction 0.579759646904671 Functional Gain - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47251481 chr2:47251485 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_102744 0 0 0 0 2 TTC7A chr2:47251498 5'GT 47251498 Upstream 14bp
chr11 60699265 60699265 1 + C G BLCA 60699264 + 60699244 60699284 41 TCACGTGGCAGCTGGAGTACCCAGGCCAGGCCCCTGAAGCA TCACGTGGCAGCTGGAGTACCGAGGCCAGGCCCCTGAAGCA < 41bp 0.513297729199457 0.803175657846865 0.87669057 0.8983104 prediction 0.579755857294816 Functional Gain - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60699264 chr11:60699265 nonsynonymous SNV 0.988 1 22 hm5C_associated_SNPs_102745 0 0 1 0 1 TMEM132A chr11:60699356 5'GT 60699356 Upstream 92bp
chr10 114053546 114053546 1 + C G LIHC 114053545 + 114053525 114053565 41 TCCCTTTGTCCTGGAGGCATCCGAAATCGGTTCAGATCTGT TCCCTTTGTCCTGGAGGCATCGGAAATCGGTTCAGATCTGT < 41bp 0.48534794519955 0.789846195147694 0.15946487 0.28839117 prediction 0.579692390295389 Functional Gain - TECTB ENSG00000119913 CDS Human protein_coding chr10:114053545 chr10:114053546 synonymous SNV . 0 22 hm5C_associated_SNPs_102748 0 0 0 0 2 TECTB chr10:114053496 3'AG 114053496 Downstream 51bp
chr10 114053546 114053546 1 + C G LIHC 114053545 + 114053525 114053565 41 TCCCTTTGTCCTGGAGGCATCCGAAATCGGTTCAGATCTGT TCCCTTTGTCCTGGAGGCATCGGAAATCGGTTCAGATCTGT < 41bp 0.48534794519955 0.789846195147694 0.15946487 0.28839117 prediction 0.579692390295389 Functional Gain - TECTB ENSG00000119913 CDS Human protein_coding chr10:114053545 chr10:114053546 synonymous SNV . 0 22 hm5C_associated_SNPs_102748 0 0 0 0 2 TECTB chr10:114053599 5'GT 114053599 Upstream 54bp
chr7 116759737 116759737 1 + T G LUAD 116759734 + 116759714 116759754 41 TCTTCCAACAATTCTAATTCCAGTAACGGGGACTCAGATTC TCTTCCAACAATTCTAATTCCAGGAACGGGGACTCAGATTC < 41bp 0.593816827556959 0.883640089491804 0.038779944 0.29201078 prediction 0.579646523869691 Functional Gain - ST7 ENSG00000004866 CDS Human protein_coding chr7:116759734 chr7:116759737 nonsynonymous SNV 0.886 2 24 hm5C_associated_SNPs_102749 0 0 1 0 1 ST7 chr7:116759774 5'GT 116759774 Upstream 38bp
chr19 501843 501843 1 + C A rs113534319 501839 + 501819 501859 41 CCCCCCAGCAGGGCTCCACACACACCCCCAGGAGCCCAGGC CCCCCCAGCAGGGCTCCACACACAACCCCAGGAGCCCAGGC < 41bp 0.398351477812947 0.789803744687732 0.09431827 0.13364607 prediction 0.579607489375464 Functional Gain - MADCAM1 ENSG00000099866 CDS Human protein_coding chr19:501839 chr19:501843 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_102750 0 0 0 0 1 MADCAM1 chr19:501929 5'GT 501929 Upstream 87bp
chr4 81283921 81283921 1 + C A LUSC 81283917 + 81283897 81283937 41 TTTCTCTCTAGGATGAAACCCTGGCCCGCCAGTTGGTGGAG TTTCTCTCTAGGATGAAACCCTGGACCGCCAGTTGGTGGAG < 41bp 0.444210309945863 0.789802896767794 0.27687484 0.41386384 prediction 0.579605793535589 Functional Gain - C4orf22 ENSG00000197826 CDS Human protein_coding chr4:81283917 chr4:81283921 nonsynonymous SNV 0.958 4 25 hm5C_associated_SNPs_102751 0 0 0 0 1 C4orf22 chr4:81283908 3'AG 81283908 Downstream 14bp
chr5 162001 162001 1 + C A ESCA 161997 + 161977 162017 41 GCCTGAGCGCCGTGGTCAGCCAGGCTGAGTGCAGGGAGGGA GCCTGAGCGCCGTGGTCAGCCAGGATGAGTGCAGGGAGGGA < 41bp 0.395917133493174 0.789780629172612 0.71489716 0.6395822 prediction 0.579561258345225 Functional Gain - PLEKHG4B ENSG00000153404 CDS Human protein_coding chr5:161997 chr5:162001 nonsynonymous SNV 0.094 2 25 hm5C_associated_SNPs_102752 0 0 0 0 1 PLEKHG4B chr5:162059 5'GT 162059 Upstream 59bp
chr19 15769342 15769342 1 + C A STAD 15769338 + 15769318 15769358 41 AGTGTTTTTGGAACCCATCACAACCCAGCCGTGTGGCCGGA AGTGTTTTTGGAACCCATCACAACACAGCCGTGTGGCCGGA < 41bp 0.372609407559248 0.789750937170637 0.075880975 0.100604415 prediction 0.579501874341275 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15769338 chr19:15769342 nonsynonymous SNV 0.389 4 25 hm5C_associated_SNPs_102754 0 0 1 0 2 CYP4F3 chr19:15769301 3'AG 15769301 Downstream 42bp
chr19 15769342 15769342 1 + C A STAD 15769338 + 15769318 15769358 41 AGTGTTTTTGGAACCCATCACAACCCAGCCGTGTGGCCGGA AGTGTTTTTGGAACCCATCACAACACAGCCGTGTGGCCGGA < 41bp 0.372609407559248 0.789750937170637 0.075880975 0.100604415 prediction 0.579501874341275 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15769338 chr19:15769342 nonsynonymous SNV 0.389 4 25 hm5C_associated_SNPs_102754 0 0 1 0 2 CYP4F3 chr19:15769365 5'GT 15769365 Upstream 24bp
chrX 48371067 48371067 1 + C A COAD 48371063 + 48371043 48371083 41 ACTTGCGTGGGCCCCTACCTCTTCCCGTACTTCATCCCCCT ACTTGCGTGGGCCCCTACCTCTTCACGTACTTCATCCCCCT < 41bp 0.370408901906741 0.789749116675314 0.34661263 0.26450312 prediction 0.579498233350627 Functional Gain - PORCN ENSG00000102312 CDS Human protein_coding chrX:48371063 chrX:48371067 nonsynonymous SNV 0.989 1 25 hm5C_associated_SNPs_102755 0 0 0 0 2 PORCN chrX:48370977 3'AG 48370977 Downstream 91bp
chrX 48371067 48371067 1 + C A COAD 48371063 + 48371043 48371083 41 ACTTGCGTGGGCCCCTACCTCTTCCCGTACTTCATCCCCCT ACTTGCGTGGGCCCCTACCTCTTCACGTACTTCATCCCCCT < 41bp 0.370408901906741 0.789749116675314 0.34661263 0.26450312 prediction 0.579498233350627 Functional Gain - PORCN ENSG00000102312 CDS Human protein_coding chrX:48371063 chrX:48371067 nonsynonymous SNV 0.989 1 25 hm5C_associated_SNPs_102755 0 0 0 0 2 PORCN chrX:48371107 5'GT 48371107 Upstream 41bp
chr14 101195327 101195327 1 + C A LUAD 101195323 + 101195303 101195343 41 TGACCAGTGCGTGACCTCTCCCGGCTGCCTTCACGGACTCT TGACCAGTGCGTGACCTCTCCCGGATGCCTTCACGGACTCT < 41bp 0.389922140388072 0.789704178039376 0.73948336 0.57475543 prediction 0.579408356078751 Functional Gain - DLK1 ENSG00000185559 CDS Human protein_coding chr14:101195323 chr14:101195327 synonymous SNV . 0 25 hm5C_associated_SNPs_102759 0 0 1 0 2 DLK1 chr14:101195273 3'AG 101195273 Downstream 55bp
chr14 101195327 101195327 1 + C A LUAD 101195323 + 101195303 101195343 41 TGACCAGTGCGTGACCTCTCCCGGCTGCCTTCACGGACTCT TGACCAGTGCGTGACCTCTCCCGGATGCCTTCACGGACTCT < 41bp 0.389922140388072 0.789704178039376 0.73948336 0.57475543 prediction 0.579408356078751 Functional Gain - DLK1 ENSG00000185559 CDS Human protein_coding chr14:101195323 chr14:101195327 synonymous SNV . 0 25 hm5C_associated_SNPs_102759 0 0 1 0 2 DLK1 chr14:101195403 5'GT 101195403 Upstream 77bp
chr2 1507794 1507794 1 + T A LUSC 1507790 + 1507770 1507810 41 AGGTGCAGAAACACCAAAGGCGGCTTCCAGTGTCTCTGCGC AGGTGCAGAAACACCAAAGGCGGCATCCAGTGTCTCTGCGC < 41bp 0.51872161133993 0.808406529222324 0.23630512 0.2716266 prediction 0.579369835764789 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1507790 chr2:1507794 nonsynonymous SNV 0.071 2 25 hm5C_associated_SNPs_102762 0 0 0 0 2 TPO chr2:1507720 3'AG 1507720 Downstream 75bp
chr2 1507794 1507794 1 + T A LUSC 1507790 + 1507770 1507810 41 AGGTGCAGAAACACCAAAGGCGGCTTCCAGTGTCTCTGCGC AGGTGCAGAAACACCAAAGGCGGCATCCAGTGTCTCTGCGC < 41bp 0.51872161133993 0.808406529222324 0.23630512 0.2716266 prediction 0.579369835764789 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1507790 chr2:1507794 nonsynonymous SNV 0.071 2 25 hm5C_associated_SNPs_102762 0 0 0 0 2 TPO chr2:1507851 5'GT 1507851 Upstream 58bp
chr5 126887416 126887416 1 + C A UCEC 126887412 + 126887392 126887432 41 TCCACAGGCTCAAAGTCTAACTCCCCAGGACTATAATCTGA TCCACAGGCTCAAAGTCTAACTCCACAGGACTATAATCTGA < 41bp 0.451982135064032 0.789661730424914 0.0580329 0.94066143 prediction 0.579323460849828 Functional Gain - PRRC1 ENSG00000164244 CDS Human protein_coding chr5:126887412 chr5:126887416 synonymous SNV . 0 25 hm5C_associated_SNPs_102764 0 0 1 0 1 PRRC1 chr5:126887399 3'AG 126887399 Downstream 18bp
chr17 36918703 36918703 1 + C A PRAD 36918699 + 36918679 36918719 41 TTTGAAACCATCTCCCAAGCCATGCTGAATGCTGTGGACCG TTTGAAACCATCTCCCAAGCCATGATGAATGCTGTGGACCG < 41bp 0.386664627327878 0.789656897043767 0.07151693 0.111932576 prediction 0.579313794087534 Functional Gain - PSMB3 ENSG00000108294 CDS Human other chr17:36918699 chr17:36918703 stopgain 0.999 1 25 hm5C_associated_SNPs_102765 0 0 1 0 2 PSMB3 chr17:36918664 3'AG 36918664 Downstream 40bp
chr17 36918703 36918703 1 + C A PRAD 36918699 + 36918679 36918719 41 TTTGAAACCATCTCCCAAGCCATGCTGAATGCTGTGGACCG TTTGAAACCATCTCCCAAGCCATGATGAATGCTGTGGACCG < 41bp 0.386664627327878 0.789656897043767 0.07151693 0.111932576 prediction 0.579313794087534 Functional Gain - PSMB3 ENSG00000108294 CDS Human other chr17:36918699 chr17:36918703 stopgain 0.999 1 25 hm5C_associated_SNPs_102765 0 0 1 0 2 PSMB3 chr17:36918758 5'GT 36918758 Upstream 56bp
chr10 122334686 122334686 1 + C A COAD 122334682 + 122334662 122334702 41 CTTCACGACGTTCTACTTGGCGGGCAAGCTGCACTGCTTCA CTTCACGACGTTCTACTTGGCGGGAAAGCTGCACTGCTTCA < 41bp 0.604452416865782 0.89408276571326 0.83396333 0.8707773 prediction 0.579260697694957 Functional Gain - PLPP4 ENSG00000203805 CDS Human protein_coding chr10:122334682 chr10:122334686 synonymous SNV . 0 25 hm5C_associated_SNPs_102768 0 0 0 0 1 PLPP4 chr10:122334643 3'AG 122334643 Downstream 44bp
chr7 100469244 100469244 1 + C A STAD 100469240 + 100469220 100469260 41 GGGCTATGGGGAAGGCCTACCACCCTGGCTGCTTCACCTGC GGGCTATGGGGAAGGCCTACCACCATGGCTGCTTCACCTGC < 41bp 0.620266852859408 0.909865197979385 0.28776157 0.45963475 prediction 0.579196690239954 Functional Gain - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100469240 chr7:100469244 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_102771 0 0 1 0 2 TRIP6 chr7:100469165 3'AG 100469165 Downstream 80bp
chr7 100469244 100469244 1 + C A STAD 100469240 + 100469220 100469260 41 GGGCTATGGGGAAGGCCTACCACCCTGGCTGCTTCACCTGC GGGCTATGGGGAAGGCCTACCACCATGGCTGCTTCACCTGC < 41bp 0.620266852859408 0.909865197979385 0.28776157 0.45963475 prediction 0.579196690239954 Functional Gain - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100469240 chr7:100469244 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_102771 0 0 1 0 2 TRIP6 chr7:100469343 5'GT 100469343 Upstream 100bp
chr3 133529974 133529974 1 + C A UCEC 133529970 + 133529950 133529990 41 GCCATCCCCAGGGCAATAGTCTGACCTTGATTGACCTTCCC GCCATCCCCAGGGCAATAGTCTGAACTTGATTGACCTTCCC < 41bp 0.380401023895164 0.789578949037391 0.43075404 0.4005615 prediction 0.579157898074781 Functional Gain - SRPRB ENSG00000144867 CDS Human protein_coding chr3:133529970 chr3:133529974 nonsynonymous SNV 0.989 0 25 hm5C_associated_SNPs_102772 0 0 1 0 2 SRPRB chr3:133529961 3'AG 133529961 Downstream 14bp
chr3 133529974 133529974 1 + C A UCEC 133529970 + 133529950 133529990 41 GCCATCCCCAGGGCAATAGTCTGACCTTGATTGACCTTCCC GCCATCCCCAGGGCAATAGTCTGAACTTGATTGACCTTCCC < 41bp 0.380401023895164 0.789578949037391 0.43075404 0.4005615 prediction 0.579157898074781 Functional Gain - SRPRB ENSG00000144867 CDS Human protein_coding chr3:133529970 chr3:133529974 nonsynonymous SNV 0.989 0 25 hm5C_associated_SNPs_102772 0 0 1 0 2 SRPRB chr3:133530043 5'GT 133530043 Upstream 70bp
chr12 4398109 4398109 1 + T G LUSC 4398107 + 4398087 4398127 41 TGAGGAAGTGAGCTCGCTCACTTGTGATGCCCTGACTGAGC TGAGGAAGTGAGCTCGCTCACTGGTGATGCCCTGACTGAGC < 41bp 0.558767205612044 0.848340344976618 0.11331311 0.47437215 prediction 0.579146278729148 Functional Gain - CCND2 ENSG00000118971 CDS Human protein_coding chr12:4398107 chr12:4398109 nonsynonymous SNV 0.801 0 23 hm5C_associated_SNPs_102773 0 0 1 0 1 CCND2 chr12:4398156 5'GT 4398156 Upstream 48bp
chr16 77229526 77229526 1 + C A rs555921616 77229522 + 77229502 77229542 41 CATGCTCGTCTCCACAGCACCTCCCGACCCCTGCGCCTCAT CATGCTCGTCTCCACAGCACCTCCAGACCCCTGCGCCTCAT < 41bp 0.357774514248595 0.789553237436719 0.026070565 0.96060973 prediction 0.579106474873437 Functional Gain - MON1B ENSG00000103111 CDS Human protein_coding chr16:77229522 chr16:77229526 synonymous SNV . 0 25 hm5C_associated_SNPs_102774 0 0 0 0 2 MON1B chr16:77229432 3'AG 77229432 Downstream 95bp
chr16 77229526 77229526 1 + C A rs555921616 77229522 + 77229502 77229542 41 CATGCTCGTCTCCACAGCACCTCCCGACCCCTGCGCCTCAT CATGCTCGTCTCCACAGCACCTCCAGACCCCTGCGCCTCAT < 41bp 0.357774514248595 0.789553237436719 0.026070565 0.96060973 prediction 0.579106474873437 Functional Gain - MON1B ENSG00000103111 CDS Human protein_coding chr16:77229522 chr16:77229526 synonymous SNV . 0 25 hm5C_associated_SNPs_102774 0 0 0 0 2 MON1B chr16:77229579 5'GT 77229579 Upstream 54bp
chr3 32200577 32200577 1 + C G rs200392121 32200576 + 32200556 32200596 41 AGGGCGGAACCGCAGGGTGGCCGAGGCCTTCGCCAGAACTG AGGGCGGAACCGCAGGGTGGCGGAGGCCTTCGCCAGAACTG < 41bp 0.49834980955272 0.789539190090175 0.81351364 0.910414 prediction 0.57907838018035 Functional Gain - GPD1L ENSG00000152642 CDS Human protein_coding chr3:32200576 chr3:32200577 synonymous SNV . 0 22 hm5C_associated_SNPs_102777 0 0 0 0 1 GPD1L chr3:32200601 5'GT 32200601 Upstream 25bp
chr8 67040549 67040549 1 + C G LUAD 67040548 + 67040528 67040568 41 GGCAAGAACAGGCCTCTAACCCGTATTTGCCCACAAGAGGA GGCAAGAACAGGCCTCTAACCGGTATTTGCCCACAAGAGGA < 41bp 0.514586668874639 0.804121774583703 0.30574816 0.65011144 prediction 0.579070211418129 Functional Gain - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67040548 chr8:67040549 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_102779 0 0 0 0 1 TRIM55 chr8:67040539 3'AG 67040539 Downstream 11bp
chrX 152770291 152770291 1 + C A UCEC 152770287 + 152770267 152770307 41 AGCGCCATGTGTCCTTTCGGCTGCCACTGCCACCTGCGGGT AGCGCCATGTGTCCTTTCGGCTGCAACTGCCACCTGCGGGT < 41bp 0.377009930476149 0.789534825264954 0.10970849 0.11490655 prediction 0.579069650529909 Functional Gain - BGN ENSG00000182492 CDS Human protein_coding chrX:152770287 chrX:152770291 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_102780 0 0 1 0 1 BGN chrX:152770327 5'GT 152770327 Upstream 37bp
chr1 20417069 20417069 1 + C A HNSC 20417065 + 20417045 20417085 41 TGGTGTCCTTTTGCAGAGCCCGGGCCCTTCTGCCATGTGAA TGGTGTCCTTTTGCAGAGCCCGGGACCTTCTGCCATGTGAA < 41bp 0.418004492143544 0.789500090094383 0.8866316 0.90819037 prediction 0.579000180188766 Functional Gain - PLA2G5 ENSG00000127472 CDS Human protein_coding chr1:20417065 chr1:20417069 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_102786 0 0 0 0 1 PLA2G5 chr1:20417061 3'AG 20417061 Downstream 9bp
chr10 75671296 75671296 1 + C A rs2227555 75671292 + 75671272 75671312 41 TTCCTTTGCAGAGCCGCCGTCTAGCGCCCCGACCTCGCCAC TTCCTTTGCAGAGCCGCCGTCTAGAGCCCCGACCTCGCCAC < 41bp 0.593666115452184 0.883160770730089 0.35806376 0.4261498 prediction 0.57898931055581 Functional Gain - PLAU;C10orf55 ENSG00000122861;ENSG00000222047 UTR5;UTR3 Human protein_coding chr10:75671292 chr10:75671296 . . 0 25 hm5C_associated_SNPs_102788 1 0 0 0 1 PLAU chr10:75671370 5'GT 75671370 Upstream 75bp
chr5 5306772 5306772 1 + C A LUAD 5306768 + 5306748 5306788 41 ACGTGCCTGCGCCCCGCTTCCATGCCCCAGGCACCCCCCAT ACGTGCCTGCGCCCCGCTTCCATGACCCAGGCACCCCCCAT < 41bp 0.403131496085661 0.789489280329535 0.17990613 0.10850108 prediction 0.578978560659069 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5306768 chr5:5306772 stopgain 0.258 1 25 hm5C_associated_SNPs_102789 0 0 0 0 1 ADAMTS16 chr5:5306841 5'GT 5306841 Upstream 70bp
chr1 228400271 228400271 1 - G C SKCM 228400272 - 228400252 228400292 41 CCGTCTCGGGCTTGGGCTCGCCGGTCACGTAGCAGCTGAGG CCGTCTCGGGCTTGGGCTCGCGGGTCACGTAGCAGCTGAGG < 41bp 0.506377233260189 0.79585198005506 0.69223684 0.9363853 prediction 0.57894949358974 Functional Gain - OBSCN ENSG00000154358 CDS Human protein_coding chr1:228400272 chr1:228400271 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_102792 0 0 1 0 1 OBSCN chr1:228400222 5'GT 228400222 Upstream 50bp
chr20 37380883 37380883 1 + C G OV 37380882 + 37380862 37380902 41 GGGCACCTGGCAGCCATCACCCTCAGCCGCATGGAGGAGAT GGGCACCTGGCAGCCATCACCGTCAGCCGCATGGAGGAGAT < 41bp 0.513647196854783 0.8030367099705 0.05497679 0.28887162 prediction 0.578779026231435 Functional Gain - ACTR5 ENSG00000101442 CDS Human protein_coding chr20:37380882 chr20:37380883 nonsynonymous SNV 0.980 5 22 hm5C_associated_SNPs_102797 0 0 0 0 1 ACTR5 chr20:37380943 5'GT 37380943 Upstream 61bp
chr11 44077843 44077843 1 + C A LUAD 44077839 + 44077819 44077859 41 CTCCACAGTATTTCTGGCATCACCCAGCACAAGCTGTGTCA CTCCACAGTATTTCTGGCATCACCAAGCACAAGCTGTGTCA < 41bp 0.366585600043265 0.789381195396131 0.18285978 0.4320779 prediction 0.578762390792261 Functional Gain - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44077839 chr11:44077843 nonsynonymous SNV 0.140 4 25 hm5C_associated_SNPs_102798 0 0 0 0 1 ACCSL chr11:44077876 5'GT 44077876 Upstream 34bp
chr15 40683717 40683717 1 + T G STAD 40683715 + 40683695 40683735 41 TTTAGGCAGTGAGACCCTGGCATCACGACAAGAATCCACTA TTTAGGCAGTGAGACCCTGGCAGCACGACAAGAATCCACTA < 41bp 0.553266661578606 0.842633640461008 0.07342717 0.3616103 prediction 0.578733957764805 Functional Gain - KNSTRN ENSG00000128944 CDS Human protein_coding chr15:40683715 chr15:40683717 nonsynonymous SNV 0.091 0 23 hm5C_associated_SNPs_102800 0 0 1 0 2 KNSTRN chr15:40683694 3'AG 40683694 Downstream 24bp
chr15 40683717 40683717 1 + T G STAD 40683715 + 40683695 40683735 41 TTTAGGCAGTGAGACCCTGGCATCACGACAAGAATCCACTA TTTAGGCAGTGAGACCCTGGCAGCACGACAAGAATCCACTA < 41bp 0.553266661578606 0.842633640461008 0.07342717 0.3616103 prediction 0.578733957764805 Functional Gain - KNSTRN ENSG00000128944 CDS Human protein_coding chr15:40683715 chr15:40683717 nonsynonymous SNV 0.091 0 23 hm5C_associated_SNPs_102800 0 0 1 0 2 KNSTRN chr15:40683755 5'GT 40683755 Upstream 39bp
chr14 23240666 23240666 1 + C G LIHC 23240665 + 23240645 23240685 41 CCTTTACGACAGACCTTTACCCACAACCCTCTCCTACAACC CCTTTACGACAGACCTTTACCGACAACCCTCTCCTACAACC < 41bp 0.493994805410527 0.789364535294423 0.070084274 0.22244725 prediction 0.578729070588845 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23240665 chr14:23240666 nonsynonymous SNV 0.967 4 22 hm5C_associated_SNPs_102801 0 0 1 1 1 OXA1L chr14:23240643 3'AG 23240643 Downstream 24bp
chr11 64010748 64010748 1 + C A rs111312054 64010744 + 64010724 64010764 41 CTTTGTCTTCTCCCTTGGCACAGGCCAGGTCATCAAGGGCT CTTTGTCTTCTCCCTTGGCACAGGACAGGTCATCAAGGGCT < 41bp 0.610369824362927 0.89972227396451 0.6470811 0.7502314 prediction 0.578704899203165 Functional Gain - FKBP2 ENSG00000173486 CDS Human protein_coding chr11:64010744 chr11:64010748 synonymous SNV . 0 25 hm5C_associated_SNPs_102802 0 0 1 0 2 FKBP2 chr11:64010671 3'AG 64010671 Downstream 78bp
chr11 64010748 64010748 1 + C A rs111312054 64010744 + 64010724 64010764 41 CTTTGTCTTCTCCCTTGGCACAGGCCAGGTCATCAAGGGCT CTTTGTCTTCTCCCTTGGCACAGGACAGGTCATCAAGGGCT < 41bp 0.610369824362927 0.89972227396451 0.6470811 0.7502314 prediction 0.578704899203165 Functional Gain - FKBP2 ENSG00000173486 CDS Human protein_coding chr11:64010744 chr11:64010748 synonymous SNV . 0 25 hm5C_associated_SNPs_102802 0 0 1 0 2 FKBP2 chr11:64010783 5'GT 64010783 Upstream 36bp
chr5 156747723 156747723 1 + T A LUSC 156747719 + 156747699 156747739 41 GGAGGGAGGGCGAGAGCCCCCTAATGACCCATGCTTGAGAG GGAGGGAGGGCGAGAGCCCCCTAAAGACCCATGCTTGAGAG < 41bp 0.533784141505165 0.823126320541633 0.030163825 0.08712092 prediction 0.578684358072936 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156747719 chr5:156747723 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_102803 0 0 0 0 1 CYFIP2 chr5:156747810 5'GT 156747810 Upstream 88bp
chr2 242148927 242148927 1 + C G rs545281192 242148926 + 242148906 242148946 41 CTTCCAGGAGAGGCCTCGGCCCCAGTTTGCCGCCTCAGCCC CTTCCAGGAGAGGCCTCGGCCGCAGTTTGCCGCCTCAGCCC < 41bp 0.526282828673977 0.815622044280456 0.1067777 0.3527454 prediction 0.578678431212958 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242148926 chr2:242148927 synonymous SNV . 0 22 hm5C_associated_SNPs_102804 0 0 0 0 1 ANO7 chr2:242148913 3'AG 242148913 Downstream 15bp
chr22 25011033 25011033 1 + C A rs191569900 25011029 + 25011009 25011049 41 AAAAGCTGAGGTCATCAACGCCCGCGAGGTGGCCCCCAGGC AAAAGCTGAGGTCATCAACGCCCGAGAGGTGGCCCCCAGGC < 41bp 0.392436182939071 0.78928094532355 0.22762138 0.14898634 prediction 0.5785618906471 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25011029 chr22:25011033 synonymous SNV . 0 25 hm5C_associated_SNPs_102809 0 0 1 0 1 GGT1 chr22:25011008 3'AG 25011008 Downstream 26bp
chr7 30655554 30655554 1 + T G OV 30655551 + 30655531 30655571 41 ATTGAGCACTTTGTAGATCCCAGTGAGAAAGACCACCCCAA ATTGAGCACTTTGTAGATCCCAGGGAGAAAGACCACCCCAA < 41bp 0.607565968684884 0.896832796994637 0.42688403 0.8941593 prediction 0.578533656619506 Functional Gain - GARS ENSG00000106105 CDS Human protein_coding chr7:30655551 chr7:30655554 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_102811 0 0 1 0 1 GARS chr7:30655512 3'AG 30655512 Downstream 43bp
chr17 61908926 61908926 1 + C A SKCM 61908922 + 61908902 61908942 41 ATGAACCTGACCCGGGGGATCAACCTGAGAAAAATTGCTGA ATGAACCTGACCCGGGGGATCAACATGAGAAAAATTGCTGA < 41bp 0.379733451934603 0.789236788416166 0.7917469 0.7900137 prediction 0.578473576832333 Functional Gain - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61908922 chr17:61908926 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_102812 0 0 1 0 2 PSMC5 chr17:61908866 3'AG 61908866 Downstream 61bp
chr17 61908926 61908926 1 + C A SKCM 61908922 + 61908902 61908942 41 ATGAACCTGACCCGGGGGATCAACCTGAGAAAAATTGCTGA ATGAACCTGACCCGGGGGATCAACATGAGAAAAATTGCTGA < 41bp 0.379733451934603 0.789236788416166 0.7917469 0.7900137 prediction 0.578473576832333 Functional Gain - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61908922 chr17:61908926 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_102812 0 0 1 0 2 PSMC5 chr17:61908976 5'GT 61908976 Upstream 51bp
chr1 175049505 175049505 1 + C A LUSC 175049501 + 175049481 175049521 41 CCTGGAACCAAGTACATAGTCACCCTGCGTAACGTCAAGAA CCTGGAACCAAGTACATAGTCACCATGCGTAACGTCAAGAA < 41bp 0.356641241804587 0.789208576203775 0.14520079 0.121632576 prediction 0.578417152407551 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175049501 chr1:175049505 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_102815 0 0 0 0 1 TNN chr1:175049562 5'GT 175049562 Upstream 58bp
chr9 132632038 132632038 1 + C G LUSC 132632037 + 132632017 132632057 41 AAGCTCCATTCAGCCATCTACCAGAATGTGCCGGCCAAGCC AAGCTCCATTCAGCCATCTACGAGAATGTGCCGGCCAAGCC < 41bp 0.543581564734036 0.832750301049747 0.30985332 0.55868757 prediction 0.578337472631424 Functional Gain - USP20 ENSG00000136878 CDS Human protein_coding chr9:132632037 chr9:132632038 nonsynonymous SNV 0.991 0 22 hm5C_associated_SNPs_102819 0 0 0 0 2 USP20 chr9:132631951 3'AG 132631951 Downstream 88bp
chr9 132632038 132632038 1 + C G LUSC 132632037 + 132632017 132632057 41 AAGCTCCATTCAGCCATCTACCAGAATGTGCCGGCCAAGCC AAGCTCCATTCAGCCATCTACGAGAATGTGCCGGCCAAGCC < 41bp 0.543581564734036 0.832750301049747 0.30985332 0.55868757 prediction 0.578337472631424 Functional Gain - USP20 ENSG00000136878 CDS Human protein_coding chr9:132632037 chr9:132632038 nonsynonymous SNV 0.991 0 22 hm5C_associated_SNPs_102819 0 0 0 0 2 USP20 chr9:132632123 5'GT 132632123 Upstream 86bp
chr2 128389852 128389852 1 + T G LUAD 128389849 + 128389829 128389869 41 AAGAGCGGGGCTGGCAGCTGCTGTGGCTGTGCACGGGCCTC AAGAGCGGGGCTGGCAGCTGCTGGGGCTGTGCACGGGCCTC < 41bp 0.412600584787388 0.789128490447365 0.5365097 0.9013829 prediction 0.57825698089473 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128389849 chr2:128389852 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_102821 0 0 0 0 1 MYO7B chr2:128389821 3'AG 128389821 Downstream 32bp
chr11 375882 375882 1 + C A UCEC 375878 + 375858 375898 41 GAATCTTCGAGCCTGGAGAACGTGCTGGAGCCCTGCGCCTA GAATCTTCGAGCCTGGAGAACGTGATGGAGCCCTGCGCCTA < 41bp 0.401926704256116 0.78909058886814 0.45398438 0.5332969 prediction 0.578181177736281 Functional Gain - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:375878 chr11:375882 nonsynonymous SNV 0.934 2 25 hm5C_associated_SNPs_102824 0 0 1 0 2 B4GALNT4 chr11:375847 3'AG 375847 Downstream 36bp
chr11 375882 375882 1 + C A UCEC 375878 + 375858 375898 41 GAATCTTCGAGCCTGGAGAACGTGCTGGAGCCCTGCGCCTA GAATCTTCGAGCCTGGAGAACGTGATGGAGCCCTGCGCCTA < 41bp 0.401926704256116 0.78909058886814 0.45398438 0.5332969 prediction 0.578181177736281 Functional Gain - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:375878 chr11:375882 nonsynonymous SNV 0.934 2 25 hm5C_associated_SNPs_102824 0 0 1 0 2 B4GALNT4 chr11:375956 5'GT 375956 Upstream 75bp
chr1 44596265 44596265 1 + T A STAD 44596261 + 44596241 44596281 41 ATGAGCTTAGACGACATATGCGGGTACACACCAGATATCGA ATGAGCTTAGACGACATATGCGGGAACACACCAGATATCGA < 41bp 0.528099684406811 0.817188260553425 0.88825834 0.9023522 prediction 0.578177152293226 Functional Gain - KLF17 ENSG00000171872 CDS Human protein_coding chr1:44596261 chr1:44596265 nonsynonymous SNV 0.633 1 25 hm5C_associated_SNPs_102825 0 0 0 0 1 KLF17 chr1:44596184 3'AG 44596184 Downstream 82bp
chr20 35865030 35865030 1 + C G OV 35865029 + 35865009 35865049 41 TGGACTCAGCTCAACATGTTCCAGACCTTGAAGTACCTGGC TGGACTCAGCTCAACATGTTCGAGACCTTGAAGTACCTGGC < 41bp 0.49112223390148 0.789076680636968 0.057281137 0.15813276 prediction 0.578153361273937 Functional Gain - RPN2 ENSG00000118705 CDS Human protein_coding chr20:35865029 chr20:35865030 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_102828 0 0 1 0 2 RPN2 chr20:35864983 3'AG 35864983 Downstream 48bp
chr20 35865030 35865030 1 + C G OV 35865029 + 35865009 35865049 41 TGGACTCAGCTCAACATGTTCCAGACCTTGAAGTACCTGGC TGGACTCAGCTCAACATGTTCGAGACCTTGAAGTACCTGGC < 41bp 0.49112223390148 0.789076680636968 0.057281137 0.15813276 prediction 0.578153361273937 Functional Gain - RPN2 ENSG00000118705 CDS Human protein_coding chr20:35865029 chr20:35865030 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_102828 0 0 1 0 2 RPN2 chr20:35865112 5'GT 35865112 Upstream 83bp
chr6 44200586 44200586 1 + C G THYM 44200585 + 44200565 44200605 41 CTGCCAAGCCTGGTGCTGGCCCGGCTGGTGTTTGTGCCACT CTGCCAAGCCTGGTGCTGGCCGGGCTGGTGTTTGTGCCACT < 41bp 0.493730669460374 0.789058308024936 0.03978911 0.4590224 prediction 0.578116616049871 Functional Gain - SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44200585 chr6:44200586 nonsynonymous SNV 0.101 5 22 hm5C_associated_SNPs_102829 0 0 1 0 1 SLC29A1 chr6:44200544 3'AG 44200544 Downstream 43bp
chr14 21469131 21469131 1 + T G UCEC 21469129 + 21469109 21469149 41 GAGTATCCCTATGGAGAGCTCATCATCTCCCTGGGCTTCTT GAGTATCCCTATGGAGAGCTCAGCATCTCCCTGGGCTTCTT < 41bp 0.463327600133928 0.789041938904049 0.109041125 0.36697322 prediction 0.578083877808099 Functional Gain - SLC39A2 ENSG00000165794 CDS Human protein_coding chr14:21469129 chr14:21469131 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_102830 0 0 0 0 1 SLC39A2 chr14:21469106 3'AG 21469106 Downstream 26bp
chr15 38988924 38988924 1 + C A rs11857596 38988920 + 38988900 38988940 41 GCAGGAGCAGCATCTGTCTCCAGGCGTCTGTTTGGATGGCT GCAGGAGCAGCATCTGTCTCCAGGAGTCTGTTTGGATGGCT < 41bp 0.590411796783663 0.879400889334004 0.9315736 0.9020035 prediction 0.577978185100682 Functional Gain - C15orf53 ENSG00000175779 CDS Human protein_coding chr15:38988920 chr15:38988924 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_102835 0 0 0 0 1 C15orf53 chr15:38988940 5'GT 38988940 Upstream 17bp
chr2 73471724 73471724 1 + C A PAAD 73471720 + 73471700 73471740 41 GCCATGACCGCTCTGAGCTCCAAGCTGATCTCCCAGCAGAA GCCATGACCGCTCTGAGCTCCAAGATGATCTCCCAGCAGAA < 41bp 0.393148970982377 0.788970975102537 0.38914588 0.31136283 prediction 0.577941950205075 Functional Gain - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73471720 chr2:73471724 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_102836 0 0 1 0 1 CCT7 chr2:73471672 3'AG 73471672 Downstream 53bp
chr2 241974002 241974002 1 + C A rs6736167 241973998 + 241973978 241974018 41 CCCCCAGGCTGGCTTCAACGCAGGCGATGGGCAGCGTTACT CCCCCAGGCTGGCTTCAACGCAGGAGATGGGCAGCGTTACT < 41bp 0.403875318619915 0.788900056647062 0.3328567 0.58395636 prediction 0.577800113294124 Functional Gain - SNED1 ENSG00000162804 CDS Human protein_coding chr2:241973998 chr2:241974002 synonymous SNV . 0 25 hm5C_associated_SNPs_102842 0 0 0 0 1 SNED1 chr2:241973985 3'AG 241973985 Downstream 18bp
chr20 44746996 44746996 1 + C A UCEC 44746992 + 44746972 44747012 41 CTCACCTCGCTATGGTTCGTCTGCCTCTGCAGTGCGTCCTC CTCACCTCGCTATGGTTCGTCTGCATCTGCAGTGCGTCCTC < 41bp 0.402733372172027 0.788863077891886 0.2794179 0.31014657 prediction 0.577726155783772 Functional Gain - CD40 ENSG00000101017 CDS Human protein_coding chr20:44746992 chr20:44746996 nonsynonymous SNV 0.004 3 25 hm5C_associated_SNPs_102844 0 0 1 0 1 CD40 chr20:44747033 5'GT 44747033 Upstream 38bp
chr1 64104434 64104434 1 + C A rs200407907 64104430 + 64104410 64104450 41 TTTTGGGAATTTGATGGACGCGAGCAAACTGTCCCTTTGTG TTTTGGGAATTTGATGGACGCGAGAAAACTGTCCCTTTGTG < 41bp 0.383891617679871 0.788852634657671 0.6406379 0.8127621 prediction 0.577705269315341 Functional Gain - PGM1 ENSG00000079739 CDS Human protein_coding chr1:64104430 chr1:64104434 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_102846 3 0 1 0 1 PGM1 chr1:64104471 5'GT 64104471 Upstream 38bp
chr20 31877759 31877759 1 + T A UCEC 31877755 + 31877735 31877775 41 CCTCGGCCAATGACCAGGAGCTGCTAGTCAAGATCCCCCTG CCTCGGCCAATGACCAGGAGCTGCAAGTCAAGATCCCCCTG < 41bp 0.558530571070497 0.847363572540419 0.3211276 0.40652868 prediction 0.577666002939843 Functional Gain - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31877755 chr20:31877759 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_102848 0 0 0 0 2 BPIFB1 chr20:31877691 3'AG 31877691 Downstream 69bp
chr20 31877759 31877759 1 + T A UCEC 31877755 + 31877735 31877775 41 CCTCGGCCAATGACCAGGAGCTGCTAGTCAAGATCCCCCTG CCTCGGCCAATGACCAGGAGCTGCAAGTCAAGATCCCCCTG < 41bp 0.558530571070497 0.847363572540419 0.3211276 0.40652868 prediction 0.577666002939843 Functional Gain - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31877755 chr20:31877759 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_102848 0 0 0 0 2 BPIFB1 chr20:31877798 5'GT 31877798 Upstream 40bp
chr17 1619894 1619894 1 + C A ESCA 1619890 + 1619870 1619910 41 ATGCTGGTCCGTGTAGTTCTCAGCCTGACACCGTCGTTCCC ATGCTGGTCCGTGTAGTTCTCAGCATGACACCGTCGTTCCC < 41bp 0.413891408475481 0.788827660260131 0.63820875 0.64233905 prediction 0.577655320520262 Functional Gain - WDR81 ENSG00000167716 CDS Human protein_coding chr17:1619890 chr17:1619894 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_102849 0 0 0 0 1 WDR81 chr17:1619927 5'GT 1619927 Upstream 34bp
chr3 50388901 50388901 1 + C A COAD 50388897 + 50388877 50388917 41 GCGGAGACCGAGTCACACATCTACCGAGCTCTGCGTACTGC GCGGAGACCGAGTCACACATCTACAGAGCTCTGCGTACTGC < 41bp 0.619726534413932 0.908551466414581 0.23495862 0.7802248 prediction 0.577649864001298 Functional Gain - CYB561D2 ENSG00000114395;ENSG00000272104 CDS Human other chr3:50388897 chr3:50388901 synonymous SNV . 0 25 hm5C_associated_SNPs_102850 0 0 1 0 2 CYB561D2 chr3:50388840 3'AG 50388840 Downstream 62bp
chr3 50388901 50388901 1 + C A COAD 50388897 + 50388877 50388917 41 GCGGAGACCGAGTCACACATCTACCGAGCTCTGCGTACTGC GCGGAGACCGAGTCACACATCTACAGAGCTCTGCGTACTGC < 41bp 0.619726534413932 0.908551466414581 0.23495862 0.7802248 prediction 0.577649864001298 Functional Gain - CYB561D2 ENSG00000114395;ENSG00000272104 CDS Human other chr3:50388897 chr3:50388901 synonymous SNV . 0 25 hm5C_associated_SNPs_102850 0 0 1 0 2 CYB561D2 chr3:50388991 5'GT 50388991 Upstream 91bp
chr17 7536218 7536218 1 + C A KIRP 7536214 + 7536194 7536234 41 TTGCCCTGCCTCCCTTAGGCCTGGCTCCCCTCCTTAACCTC TTGCCCTGCCTCCCTTAGGCCTGGATCCCCTCCTTAACCTC < 41bp 0.566964916830328 0.855784167216672 0.1838226 0.38056123 prediction 0.577638500772688 Functional Gain - SHBG ENSG00000129214 CDS Human protein_coding chr17:7536214 chr17:7536218 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_102851 0 0 0 0 1 SHBG chr17:7536277 5'GT 7536277 Upstream 60bp
chr1 15809837 15809837 1 + C A LUSC 15809833 + 15809813 15809853 41 CCAGCTGGCCTGCCTCCCTCCTGCCGGCACCATTCTACCCA CCAGCTGGCCTGCCTCCCTCCTGCAGGCACCATTCTACCCA < 41bp 0.624474960285806 0.913291296949452 0.027944326 0.07116929 prediction 0.577632673327292 Functional Gain - CELA2B ENSG00000215704 CDS Human protein_coding chr1:15809833 chr1:15809837 synonymous SNV . 0 25 hm5C_associated_SNPs_102852 0 0 0 0 1 CELA2B chr1:15809759 3'AG 15809759 Downstream 79bp
chr4 109088792 109088792 1 - G C SKCM 109088793 - 109088773 109088813 41 CTTCGCCGAGATCAGTCATCCCGAAGAGGAAGGCGATTTAG CTTCGCCGAGATCAGTCATCCGGAAGAGGAAGGCGATTTAG < 41bp 0.508765071828688 0.797567803849802 0.15497139 0.84324133 prediction 0.577605464042227 Functional Gain - LEF1 ENSG00000138795 CDS Human protein_coding chr4:109088793 chr4:109088792 synonymous SNV . 0 22 hm5C_associated_SNPs_102853 0 0 0 0 1 LEF1 chr4:109088711 5'GT 109088711 Upstream 82bp
chr12 82824742 82824742 1 + T G rs146381244 82824740 + 82824720 82824760 41 AAGAGAGATGGTGCTGTGGTCGTAATGCCAGAATGTCAGCA AAGAGAGATGGTGCTGTGGTCGGAATGCCAGAATGTCAGCA < 41bp 0.468259970439613 0.788787472937983 0.19399601 0.36741424 prediction 0.577574945875965 Functional Gain - METTL25 ENSG00000127720 CDS Human protein_coding chr12:82824740 chr12:82824742 synonymous SNV . 0 23 hm5C_associated_SNPs_102856 0 0 0 0 2 METTL25 chr12:82824672 3'AG 82824672 Downstream 71bp
chr12 82824742 82824742 1 + T G rs146381244 82824740 + 82824720 82824760 41 AAGAGAGATGGTGCTGTGGTCGTAATGCCAGAATGTCAGCA AAGAGAGATGGTGCTGTGGTCGGAATGCCAGAATGTCAGCA < 41bp 0.468259970439613 0.788787472937983 0.19399601 0.36741424 prediction 0.577574945875965 Functional Gain - METTL25 ENSG00000127720 CDS Human protein_coding chr12:82824740 chr12:82824742 synonymous SNV . 0 23 hm5C_associated_SNPs_102856 0 0 0 0 2 METTL25 chr12:82824766 5'GT 82824766 Upstream 25bp
chr5 170863108 170863108 1 + C G STAD 170863107 + 170863087 170863127 41 CCCTGCCCAGGTGCTGGTTGCCGAGGAGAACGTGGACTTCC CCCTGCCCAGGTGCTGGTTGCGGAGGAGAACGTGGACTTCC < 41bp 0.526812046302198 0.815596581551245 0.9142431 0.93182784 prediction 0.577569070498095 Functional Gain - FGF18 ENSG00000156427 CDS Human protein_coding chr5:170863107 chr5:170863108 synonymous SNV . 0 22 hm5C_associated_SNPs_102857 0 0 1 0 1 FGF18 chr5:170863097 3'AG 170863097 Downstream 12bp
chr11 65384727 65384727 1 + C G rs12790427 65384726 + 65384706 65384746 41 CTTTTTCACCGCCAGGGACCCCGGAGTGGAGATGACAGTGT CTTTTTCACCGCCAGGGACCCGGGAGTGGAGATGACAGTGT < 41bp 0.518666779311102 0.807417006827338 0.39987135 0.8884032 prediction 0.577500455032471 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65384726 chr11:65384727 synonymous SNV . 0 22 hm5C_associated_SNPs_102863 0 0 1 0 2 PCNX3 chr11:65384721 3'AG 65384721 Downstream 7bp
chr11 65384727 65384727 1 + C G rs12790427 65384726 + 65384706 65384746 41 CTTTTTCACCGCCAGGGACCCCGGAGTGGAGATGACAGTGT CTTTTTCACCGCCAGGGACCCGGGAGTGGAGATGACAGTGT < 41bp 0.518666779311102 0.807417006827338 0.39987135 0.8884032 prediction 0.577500455032471 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65384726 chr11:65384727 synonymous SNV . 0 22 hm5C_associated_SNPs_102863 0 0 1 0 2 PCNX3 chr11:65384820 5'GT 65384820 Upstream 94bp
chr5 23521209 23521209 1 + T A STAD 23521205 + 23521185 23521225 41 AACAGCAAATTTACTGAATGCAAGTGGCTCAGAGCAGGCTC AACAGCAAATTTACTGAATGCAAGAGGCTCAGAGCAGGCTC < 41bp 0.50440165463425 0.793137306622296 0.22057274 0.4291852 prediction 0.577471303976092 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23521205 chr5:23521209 nonsynonymous SNV 0.016 2 25 hm5C_associated_SNPs_102864 0 0 0 0 2 PRDM9 chr5:23521132 3'AG 23521132 Downstream 78bp
chr5 23521209 23521209 1 + T A STAD 23521205 + 23521185 23521225 41 AACAGCAAATTTACTGAATGCAAGTGGCTCAGAGCAGGCTC AACAGCAAATTTACTGAATGCAAGAGGCTCAGAGCAGGCTC < 41bp 0.50440165463425 0.793137306622296 0.22057274 0.4291852 prediction 0.577471303976092 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23521205 chr5:23521209 nonsynonymous SNV 0.016 2 25 hm5C_associated_SNPs_102864 0 0 0 0 2 PRDM9 chr5:23521288 5'GT 23521288 Upstream 80bp
chr7 100390129 100390129 1 + C A LUAD 100390125 + 100390105 100390145 41 CGCCATCCTCTGCCAGGAGGCGGGCGCTGCCCTGGCTGGCT CGCCATCCTCTGCCAGGAGGCGGGAGCTGCCCTGGCTGGCT < 41bp 0.454036917928977 0.788730269523489 0.9019129 0.92087126 prediction 0.577460539046978 Functional Gain - ZAN ENSG00000146839 CDS Human protein_coding chr7:100390125 chr7:100390129 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_102865 0 0 0 0 1 ZAN chr7:100390166 5'GT 100390166 Upstream 38bp
chr5 133873698 133873698 1 + C G SKCM 133873697 + 133873677 133873717 41 AGGTCATGCGACATCTACATCCGCATCAAGATGCTCCAAAC AGGTCATGCGACATCTACATCGGCATCAAGATGCTCCAAAC < 41bp 0.512881741992376 0.801605549675531 0.15401936 0.703517 prediction 0.577447615366309 Functional Gain - JADE2 ENSG00000043143 CDS Human protein_coding chr5:133873697 chr5:133873698 synonymous SNV . 0 22 hm5C_associated_SNPs_102866 0 0 1 0 2 JADE2 chr5:133873679 3'AG 133873679 Downstream 20bp
chr5 133873698 133873698 1 + C G SKCM 133873697 + 133873677 133873717 41 AGGTCATGCGACATCTACATCCGCATCAAGATGCTCCAAAC AGGTCATGCGACATCTACATCGGCATCAAGATGCTCCAAAC < 41bp 0.512881741992376 0.801605549675531 0.15401936 0.703517 prediction 0.577447615366309 Functional Gain - JADE2 ENSG00000043143 CDS Human protein_coding chr5:133873697 chr5:133873698 synonymous SNV . 0 22 hm5C_associated_SNPs_102866 0 0 1 0 2 JADE2 chr5:133873773 5'GT 133873773 Upstream 76bp
chr17 12656636 12656636 1 + C A SKCM 12656632 + 12656612 12656652 41 AGAAGGGCACAGGGTCTCCTCGCCCATCAGCAGCCAGGTGT AGAAGGGCACAGGGTCTCCTCGCCAATCAGCAGCCAGGTGT < 41bp 0.619743628041006 0.908455971916116 0.20075983 0.91873956 prediction 0.577424687750219 Functional Gain - MYOCD ENSG00000141052;ENSG00000273452 CDS Human other chr17:12656632 chr17:12656636 synonymous SNV . 0 25 hm5C_associated_SNPs_102867 0 0 0 0 1 MYOCD chr17:12656663 5'GT 12656663 Upstream 28bp
chr4 76714942 76714942 1 + C A SKCM 76714938 + 76714918 76714958 41 GTGCTGCTGTGGCCCTTGCCCATGCGTTGCAAGAAAATGCC GTGCTGCTGTGGCCCTTGCCCATGAGTTGCAAGAAAATGCC < 41bp 0.393277658895674 0.788676910208335 0.11848706 0.1017966 prediction 0.57735382041667 Functional Gain - USO1 ENSG00000138768 CDS Human protein_coding chr4:76714938 chr4:76714942 nonsynonymous SNV 0.534 3 25 hm5C_associated_SNPs_102870 0 0 1 0 1 USO1 chr4:76714843 3'AG 76714843 Downstream 100bp
chr21 34793916 34793916 1 + T G UCEC 34793913 + 34793893 34793933 41 TTCCCAATGGATTTCAATGTCACTCTACGCCTTCGAGCTGA TTCCCAATGGATTTCAATGTCACGCTACGCCTTCGAGCTGA < 41bp 0.401023308751188 0.788616965343929 0.22539943 0.19178158 prediction 0.577233930687857 Functional Gain - IFNGR2 ENSG00000159128 CDS Human protein_coding chr21:34793913 chr21:34793916 synonymous SNV . 0 24 hm5C_associated_SNPs_102873 0 0 1 0 1 IFNGR2 chr21:34793992 5'GT 34793992 Upstream 77bp
chr14 68191238 68191238 1 + C A LUAD 68191234 + 68191214 68191254 41 TAGAACAAATGTGCAGCTTCCTGGCAAGGTAGTGGTGATCA TAGAACAAATGTGCAGCTTCCTGGAAAGGTAGTGGTGATCA < 41bp 0.621142250437462 0.909755951537945 0.18943161 0.34711397 prediction 0.577227402200967 Functional Gain - RDH12 ENSG00000139988 CDS Human protein_coding chr14:68191234 chr14:68191238 synonymous SNV . 0 25 hm5C_associated_SNPs_102874 0 0 0 0 2 RDH12 chr14:68191190 3'AG 68191190 Downstream 49bp
chr14 68191238 68191238 1 + C A LUAD 68191234 + 68191214 68191254 41 TAGAACAAATGTGCAGCTTCCTGGCAAGGTAGTGGTGATCA TAGAACAAATGTGCAGCTTCCTGGAAAGGTAGTGGTGATCA < 41bp 0.621142250437462 0.909755951537945 0.18943161 0.34711397 prediction 0.577227402200967 Functional Gain - RDH12 ENSG00000139988 CDS Human protein_coding chr14:68191234 chr14:68191238 synonymous SNV . 0 25 hm5C_associated_SNPs_102874 0 0 0 0 2 RDH12 chr14:68191308 5'GT 68191308 Upstream 71bp
chr20 39986973 39986973 1 + C A UCEC 39986969 + 39986949 39986989 41 CCACGGACAGCCCTTCTATGCTGCCTTTGGGAATAGGCCCA CCACGGACAGCCCTTCTATGCTGCATTTGGGAATAGGCCCA < 41bp 0.368027577031071 0.788579521372609 0.089746475 0.07826114 prediction 0.577159042745217 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39986969 chr20:39986973 synonymous SNV . 0 25 hm5C_associated_SNPs_102876 0 0 1 2 2 LPIN3 chr20:39986877 3'AG 39986877 Downstream 97bp
chr20 39986973 39986973 1 + C A UCEC 39986969 + 39986949 39986989 41 CCACGGACAGCCCTTCTATGCTGCCTTTGGGAATAGGCCCA CCACGGACAGCCCTTCTATGCTGCATTTGGGAATAGGCCCA < 41bp 0.368027577031071 0.788579521372609 0.089746475 0.07826114 prediction 0.577159042745217 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39986969 chr20:39986973 synonymous SNV . 0 25 hm5C_associated_SNPs_102876 0 0 1 2 2 LPIN3 chr20:39986991 5'GT 39986991 Upstream 19bp
chr1 29639188 29639188 1 + C G LUAD 29639187 + 29639167 29639207 41 GCGTGAAGGCCTCCACCCCACCTGATGCCGGGCCCATTGTC GCGTGAAGGCCTCCACCCCACGTGATGCCGGGCCCATTGTC < 41bp 0.494996766082454 0.788489238097592 0.062181532 0.18460959 prediction 0.576978476195184 Functional Gain - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29639187 chr1:29639188 nonsynonymous SNV 0.952 4 22 hm5C_associated_SNPs_102881 0 0 1 0 1 PTPRU chr1:29639218 5'GT 29639218 Upstream 31bp
chr2 79253283 79253283 1 + T G rs148827158 79253280 + 79253260 79253300 41 TGCTTTCCTGCCTCATTCTCCTGTGTCAGGTTCAAGGTGAG TGCTTTCCTGCCTCATTCTCCTGGGTCAGGTTCAAGGTGAG < 41bp 0.409100977819805 0.788457270235404 0.14244905 0.87999386 prediction 0.576914540470808 Functional Gain - REG3G ENSG00000143954 CDS Human protein_coding chr2:79253280 chr2:79253283 nonsynonymous SNV 0.413 1 24 hm5C_associated_SNPs_102884 0 0 0 0 2 REG3G chr2:79253209 3'AG 79253209 Downstream 75bp
chr2 79253283 79253283 1 + T G rs148827158 79253280 + 79253260 79253300 41 TGCTTTCCTGCCTCATTCTCCTGTGTCAGGTTCAAGGTGAG TGCTTTCCTGCCTCATTCTCCTGGGTCAGGTTCAAGGTGAG < 41bp 0.409100977819805 0.788457270235404 0.14244905 0.87999386 prediction 0.576914540470808 Functional Gain - REG3G ENSG00000143954 CDS Human protein_coding chr2:79253280 chr2:79253283 nonsynonymous SNV 0.413 1 24 hm5C_associated_SNPs_102884 0 0 0 0 2 REG3G chr2:79253295 5'GT 79253295 Upstream 13bp
chr1 213134569 213134569 1 + C A LUAD 213134565 + 213134545 213134585 41 TGACGATCCCAGACTGGCTCCAGGCGATCCAGAATTACATG TGACGATCCCAGACTGGCTCCAGGAGATCCAGAATTACATG < 41bp 0.386065674145996 0.788454590825962 0.74391514 0.36750007 prediction 0.576909181651924 Functional Gain - VASH2 ENSG00000143494 CDS Human protein_coding chr1:213134565 chr1:213134569 nonsynonymous SNV 0.964 3 25 hm5C_associated_SNPs_102885 0 0 0 0 2 VASH2 chr1:213134508 3'AG 213134508 Downstream 62bp
chr1 213134569 213134569 1 + C A LUAD 213134565 + 213134545 213134585 41 TGACGATCCCAGACTGGCTCCAGGCGATCCAGAATTACATG TGACGATCCCAGACTGGCTCCAGGAGATCCAGAATTACATG < 41bp 0.386065674145996 0.788454590825962 0.74391514 0.36750007 prediction 0.576909181651924 Functional Gain - VASH2 ENSG00000143494 CDS Human protein_coding chr1:213134565 chr1:213134569 nonsynonymous SNV 0.964 3 25 hm5C_associated_SNPs_102885 0 0 0 0 2 VASH2 chr1:213134596 5'GT 213134596 Upstream 28bp
chr6 50683321 50683321 1 + T A UCEC 50683317 + 50683297 50683337 41 CTGGCCGCCGCGGGAGCAGACGACTTGCAGGTAAATAAGCA CTGGCCGCCGCGGGAGCAGACGACATGCAGGTAAATAAGCA < 41bp 0.535285555432644 0.823723571021863 0.39686915 0.39457116 prediction 0.576876031178438 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50683317 chr6:50683321 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_102889 0 0 0 0 1 TFAP2D chr6:50683326 5'GT 50683326 Upstream 6bp
chrX 37913589 37913589 1 + T A LUSC 37913585 + 37913565 37913605 41 AATCTTTGACCGGGGAGACCCTTGTCAGGCTTGCTCACTGA AATCTTTGACCGGGGAGACCCTTGACAGGCTTGCTCACTGA < 41bp 0.463326790283294 0.788411287381709 0.103111595 0.6602997 prediction 0.576822574763417 Functional Gain - SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37913585 chrX:37913589 stopgain 0.739 1 25 hm5C_associated_SNPs_102891 0 0 0 0 1 SYTL5 chrX:37913675 5'GT 37913675 Upstream 87bp
chr7 127326753 127326753 1 + T G SKCM 127326751 + 127326731 127326771 41 AGATCAACCTCAGCAACATTCGTGCTGGAAATCTTGCTCGC AGATCAACCTCAGCAACATTCGGGCTGGAAATCTTGCTCGC < 41bp 0.545536825287943 0.833936182892828 0.502811 0.9286048 prediction 0.57679871520977 Functional Gain - SND1 ENSG00000197157 CDS Human protein_coding chr7:127326751 chr7:127326753 synonymous SNV . 0 23 hm5C_associated_SNPs_102893 0 0 1 0 2 SND1 chr7:127326667 3'AG 127326667 Downstream 87bp
chr7 127326753 127326753 1 + T G SKCM 127326751 + 127326731 127326771 41 AGATCAACCTCAGCAACATTCGTGCTGGAAATCTTGCTCGC AGATCAACCTCAGCAACATTCGGGCTGGAAATCTTGCTCGC < 41bp 0.545536825287943 0.833936182892828 0.502811 0.9286048 prediction 0.57679871520977 Functional Gain - SND1 ENSG00000197157 CDS Human protein_coding chr7:127326751 chr7:127326753 synonymous SNV . 0 23 hm5C_associated_SNPs_102893 0 0 1 0 2 SND1 chr7:127326816 5'GT 127326816 Upstream 64bp
chr11 34988219 34988219 1 + C A OV 34988215 + 34988195 34988235 41 TCAAACTTGTCCAGTTGAAACAAACGGGCAAGATTACCGAG TCAAACTTGTCCAGTTGAAACAAAAGGGCAAGATTACCGAG < 41bp 0.391168507891842 0.788343935918341 0.08751467 0.11740771 prediction 0.576687871836681 Functional Gain - PDHX ENSG00000110435 CDS Human protein_coding chr11:34988215 chr11:34988219 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_102897 0 0 1 0 1 PDHX chr11:34988187 3'AG 34988187 Downstream 33bp
chr16 57788877 57788877 1 + C A LAML 57788873 + 57788853 57788893 41 GCAAAGGAGGCAGCAAAGCCCAGCCCTGCCATGGATGTGCA GCAAAGGAGGCAGCAAAGCCCAGCACTGCCATGGATGTGCA < 41bp 0.376458130809991 0.788327132350498 0.23264298 0.27595216 prediction 0.576654264700996 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57788873 chr16:57788877 nonsynonymous SNV 0.913 0 25 hm5C_associated_SNPs_102898 0 0 1 0 2 KATNB1 chr16:57788842 3'AG 57788842 Downstream 36bp
chr16 57788877 57788877 1 + C A LAML 57788873 + 57788853 57788893 41 GCAAAGGAGGCAGCAAAGCCCAGCCCTGCCATGGATGTGCA GCAAAGGAGGCAGCAAAGCCCAGCACTGCCATGGATGTGCA < 41bp 0.376458130809991 0.788327132350498 0.23264298 0.27595216 prediction 0.576654264700996 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57788873 chr16:57788877 nonsynonymous SNV 0.913 0 25 hm5C_associated_SNPs_102898 0 0 1 0 2 KATNB1 chr16:57788909 5'GT 57788909 Upstream 33bp
chr19 47770032 47770032 1 + C G rs60383222 47770031 + 47770011 47770051 41 GTGGAGGCGCGAGTGGGATGCCGAGAAGACCGATGGGATGT GTGGAGGCGCGAGTGGGATGCGGAGAAGACCGATGGGATGT < 41bp 0.522186513299511 0.810386234588913 0.6932428 0.9000595 prediction 0.576399442578803 Functional Gain - CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47770031 chr19:47770032 synonymous SNV . 0 22 hm5C_associated_SNPs_102906 0 0 1 0 1 CCDC9 chr19:47770049 5'GT 47770049 Upstream 18bp
chr2 109411018 109411018 1 + C A LGG 109411014 + 109410994 109411034 41 AGTTGCCTTGCCAACTAATACGACCTCATCGAGACCTCGGA AGTTGCCTTGCCAACTAATACGACATCATCGAGACCTCGGA < 41bp 0.393894510636818 0.788191913839742 0.03802538 0.05428505 prediction 0.576383827679485 Functional Gain - CCDC138 ENSG00000163006 CDS Human protein_coding chr2:109411014 chr2:109411018 synonymous SNV . 0 25 hm5C_associated_SNPs_102907 0 0 1 0 1 CCDC138 chr2:109410996 3'AG 109410996 Downstream 23bp
chr3 52818383 52818383 1 + C A UCEC 52818379 + 52818359 52818399 41 CGGGGCAGGTTCCCGCTCTACAACCTGGGTTTCGGCCACAA CGGGGCAGGTTCCCGCTCTACAACATGGGTTTCGGCCACAA < 41bp 0.362308164450335 0.788176868523129 0.09575069 0.030168653 prediction 0.576353737046258 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52818379 chr3:52818383 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_102909 0 0 0 0 1 ITIH1 chr3:52818312 3'AG 52818312 Downstream 72bp
chrX 67944166 67944166 1 + T A GBM 67944162 + 67944142 67944182 41 CCTAGGGGCCGTTCTCCTGACTGGTACAACAAAGTCTTTGG CCTAGGGGCCGTTCTCCTGACTGGAACAACAAAGTCTTTGG < 41bp 0.48444269766361 0.788156025050533 0.05327478 0.08220783 prediction 0.576312050101065 Functional Gain - STARD8 ENSG00000130052 CDS Human protein_coding chrX:67944162 chrX:67944166 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102910 0 0 0 0 1 STARD8 chrX:67944147 3'AG 67944147 Downstream 20bp
chr19 7573098 7573098 1 + T A rs475923 7573094 + 7573074 7573114 41 TCCACCCTGTCTCCACAGTGCAAGTACAGCCACATGGAGCC TCCACCCTGTCTCCACAGTGCAAGAACAGCCACATGGAGCC < 41bp 0.491405271645943 0.788148895458538 0.18160534 0.22259524 prediction 0.576297790917075 Functional Gain - TEX45 ENSG00000198723 CDS Human protein_coding chr19:7573094 chr19:7573098 nonsynonymous SNV 0.913 2 25 hm5C_associated_SNPs_102911 0 0 0 0 1 TEX45 chr19:7573092 3'AG 7573092 Downstream 7bp
chr3 52233326 52233326 1 + C A LAML 52233322 + 52233302 52233342 41 CCAGGCCTTTCTGCAGAAAGCAGGCAAATCTCTGTTGTTCT CCAGGCCTTTCTGCAGAAAGCAGGAAAATCTCTGTTGTTCT < 41bp 0.612376251631889 0.900522195366866 0.71279985 0.6238295 prediction 0.576291887469954 Functional Gain - ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233322 chr3:52233326 synonymous SNV . 0 25 hm5C_associated_SNPs_102912 0 0 1 0 1 ALAS1 chr3:52233237 3'AG 52233237 Downstream 90bp
chr16 76509917 76509917 1 + T A COAD 76509913 + 76509893 76509933 41 TCATTGTAACTGTACCAACACTGGTTACAGAGGAGCTACTT TCATTGTAACTGTACCAACACTGGATACAGAGGAGCTACTT < 41bp 0.464733507633274 0.788133270485435 0.07367304 0.16358751 prediction 0.576266540970869 Functional Gain - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76509913 chr16:76509917 synonymous SNV . 0 25 hm5C_associated_SNPs_102915 0 0 0 0 2 CNTNAP4 chr16:76509836 3'AG 76509836 Downstream 82bp
chr16 76509917 76509917 1 + T A COAD 76509913 + 76509893 76509933 41 TCATTGTAACTGTACCAACACTGGTTACAGAGGAGCTACTT TCATTGTAACTGTACCAACACTGGATACAGAGGAGCTACTT < 41bp 0.464733507633274 0.788133270485435 0.07367304 0.16358751 prediction 0.576266540970869 Functional Gain - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76509913 chr16:76509917 synonymous SNV . 0 25 hm5C_associated_SNPs_102915 0 0 0 0 2 CNTNAP4 chr16:76509942 5'GT 76509942 Upstream 26bp
chr3 127325501 127325501 1 + C A LIHC 127325497 + 127325477 127325517 41 CCGCACCAGTGGGGTGGTGACCAGCTGCACTGGCGTCCTGC CCGCACCAGTGGGGTGGTGACCAGATGCACTGGCGTCCTGC < 41bp 0.38961685984914 0.788096171928522 0.8958321 0.921178 prediction 0.576192343857043 Functional Gain - MCM2 ENSG00000073111 CDS Human protein_coding chr3:127325497 chr3:127325501 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_102917 0 0 1 0 1 MCM2 chr3:127325453 3'AG 127325453 Downstream 49bp
chr9 136269152 136269152 1 + C A LUAD 136269148 + 136269128 136269168 41 TGAACAATGCCTACCGGGGACTGGCCAGCCTGGTGAAGGTG TGAACAATGCCTACCGGGGACTGGACAGCCTGGTGAAGGTG < 41bp 0.380406181972504 0.788092190520638 0.047360897 0.13516358 prediction 0.576184381041277 Functional Gain - STKLD1 ENSG00000198870 CDS Human protein_coding chr9:136269148 chr9:136269152 nonsynonymous SNV 0.181 3 25 hm5C_associated_SNPs_102920 0 0 0 0 1 STKLD1 chr9:136269172 5'GT 136269172 Upstream 21bp
chr5 75581094 75581094 1 + C A LUSC 75581090 + 75581070 75581110 41 TCCGTGGTGGCCCTCACATTCATGCCTGAAAGCCCACGATT TCCGTGGTGGCCCTCACATTCATGACTGAAAGCCCACGATT < 41bp 0.39537362226397 0.788089777928997 0.32590127 0.25707686 prediction 0.576179555857994 Functional Gain - SV2C ENSG00000122012 CDS Human protein_coding chr5:75581090 chr5:75581094 nonsynonymous SNV 0.991 5 25 hm5C_associated_SNPs_102921 0 0 0 0 1 SV2C chr5:75581120 5'GT 75581120 Upstream 27bp
chr4 147561058 147561058 1 + C G STAD 147561057 + 147561037 147561077 41 CTGGATGAGAGTCTGCTGGCCCGCGCCGAGGCTCTGGCAGC CTGGATGAGAGTCTGCTGGCCGGCGCCGAGGCTCTGGCAGC < 41bp 0.490774093245464 0.788081023272132 0.13927129 0.49807996 prediction 0.576162046544264 Functional Gain - POU4F2 ENSG00000151615 CDS Human protein_coding chr4:147561057 chr4:147561058 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_102922 0 0 0 0 1 POU4F2 chr4:147561019 3'AG 147561019 Downstream 40bp
chr16 31213851 31213851 1 + T A ACC 31213847 + 31213827 31213867 41 TCCAGGTAGAAGCTGACCAGCTTGTCGGTGAGGTCCAAGGC TCCAGGTAGAAGCTGACCAGCTTGACGGTGAGGTCCAAGGC < 41bp 0.482489289325016 0.788076094486233 0.3878015 0.4206862 prediction 0.576152188972467 Functional Gain - PYCARD ENSG00000103490;ENSG00000261359 CDS Human other chr16:31213847 chr16:31213851 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102924 0 0 1 0 1 PYCARD chr16:31213781 3'AG 31213781 Downstream 71bp
chr1 155106494 155106494 1 + T G SKCM 155106491 + 155106471 155106511 41 TGCTGCCCCACGCCTCTTCCCACTTGCCTGGACTGTGCTGC TGCTGCCCCACGCCTCTTCCCACGTGCCTGGACTGTGCTGC < 41bp 0.408781992257519 0.788058784673838 0.3032372 0.87900364 prediction 0.576117569347677 Functional Gain - EFNA1 ENSG00000169242 CDS Human protein_coding chr1:155106491 chr1:155106494 nonsynonymous SNV 0.987 2 24 hm5C_associated_SNPs_102925 0 0 1 0 1 EFNA1 chr1:155106431 3'AG 155106431 Downstream 64bp
chrX 55030265 55030265 1 + C A CESC 55030261 + 55030241 55030281 41 CATTCTGGGTGACCTGAATACAGCCCACCGCCCCATTGACC CATTCTGGGTGACCTGAATACAGCACACCGCCCCATTGACC < 41bp 0.370308318176757 0.788050977217682 0.10879761 0.06545383 prediction 0.576101954435364 Functional Gain - APEX2 ENSG00000169188 CDS Human protein_coding chrX:55030261 chrX:55030265 synonymous SNV . 0 25 hm5C_associated_SNPs_102926 0 0 1 0 2 APEX2 chrX:55030232 3'AG 55030232 Downstream 34bp
chrX 55030265 55030265 1 + C A CESC 55030261 + 55030241 55030281 41 CATTCTGGGTGACCTGAATACAGCCCACCGCCCCATTGACC CATTCTGGGTGACCTGAATACAGCACACCGCCCCATTGACC < 41bp 0.370308318176757 0.788050977217682 0.10879761 0.06545383 prediction 0.576101954435364 Functional Gain - APEX2 ENSG00000169188 CDS Human protein_coding chrX:55030261 chrX:55030265 synonymous SNV . 0 25 hm5C_associated_SNPs_102926 0 0 1 0 2 APEX2 chrX:55030301 5'GT 55030301 Upstream 37bp
chr15 43891105 43891105 1 + C A rs147081553 43891101 + 43891081 43891121 41 AGGAGTGGACACTGCTGCTACAGGCGGTGTCTTTGATATTT AGGAGTGGACACTGCTGCTACAGGAGGTGTCTTTGATATTT < 41bp 0.60606234888449 0.894111428770007 0.53594553 0.6421698 prediction 0.576098159771034 Functional Gain - CKMT1B ENSG00000237289 CDS Human protein_coding chr15:43891101 chr15:43891105 synonymous SNV . 0 25 hm5C_associated_SNPs_102927 0 0 0 0 2 CKMT1B chr15:43891025 3'AG 43891025 Downstream 81bp
chr15 43891105 43891105 1 + C A rs147081553 43891101 + 43891081 43891121 41 AGGAGTGGACACTGCTGCTACAGGCGGTGTCTTTGATATTT AGGAGTGGACACTGCTGCTACAGGAGGTGTCTTTGATATTT < 41bp 0.60606234888449 0.894111428770007 0.53594553 0.6421698 prediction 0.576098159771034 Functional Gain - CKMT1B ENSG00000237289 CDS Human protein_coding chr15:43891101 chr15:43891105 synonymous SNV . 0 25 hm5C_associated_SNPs_102927 0 0 0 0 2 CKMT1B chr15:43891150 5'GT 43891150 Upstream 46bp
chr1 15813791 15813791 1 + T A BLCA 15813787 + 15813767 15813807 41 TGGCCTTCCTCAGGGAGACTCCGGTGGGCCGCTGAACTGTC TGGCCTTCCTCAGGGAGACTCCGGAGGGCCGCTGAACTGTC < 41bp 0.501519277307152 0.789527813842181 0.91999114 0.92431384 prediction 0.576017073070058 Functional Gain - CELA2B ENSG00000215704 CDS Human protein_coding chr1:15813787 chr1:15813791 synonymous SNV . 0 25 hm5C_associated_SNPs_102931 0 0 0 0 1 CELA2B chr1:15813780 3'AG 15813780 Downstream 12bp
chr4 96051132 96051132 1 + C G rs56083112 96051131 + 96051111 96051151 41 AGCTGTGAAAGTGTTCTTCACCACAGAGGAAGCCAGCTGGT AGCTGTGAAAGTGTTCTTCACGACAGAGGAAGCCAGCTGGT < 41bp 0.497272273028949 0.788003919728702 0.08635491 0.18378526 prediction 0.576007839457404 Functional Gain - BMPR1B ENSG00000138696 CDS Human protein_coding chr4:96051131 chr4:96051132 synonymous SNV . 0 22 hm5C_associated_SNPs_102932 0 0 0 0 1 BMPR1B chr4:96051205 5'GT 96051205 Upstream 74bp
chr19 54395039 54395039 1 + C A LUAD 54395035 + 54395015 54395055 41 ACCTGACGAAACAGAAGACCCGAACGGTGAAAGCCACGCTA ACCTGACGAAACAGAAGACCCGAAAGGTGAAAGCCACGCTA < 41bp 0.399173602008094 0.788002671161251 0.2015459 0.32435077 prediction 0.576005342322502 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54395035 chr19:54395039 nonsynonymous SNV 0.976 3 25 hm5C_associated_SNPs_102933 0 0 0 0 1 PRKCG chr19:54395084 5'GT 54395084 Upstream 46bp
chr12 2930009 2930009 1 + T A STAD 2930005 + 2929985 2930025 41 GAAAAAGGACACTGGGTCCCCTCCTGCCTCTGAAGGGCCCA GAAAAAGGACACTGGGTCCCCTCCAGCCTCTGAAGGGCCCA < 41bp 0.569299636076202 0.857280222043948 0.08927694 0.9330745 prediction 0.575961171935491 Functional Gain - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2930005 chr12:2930009 synonymous SNV . 0 25 hm5C_associated_SNPs_102935 0 0 1 0 1 ITFG2 chr12:2930038 5'GT 2930038 Upstream 30bp
chr10 131565073 131565073 1 + C G BLCA 131565072 + 131565052 131565092 41 GTCCCCATCCTCATCCCGTGCCACAGAGTGGTCTGCAGCAG GTCCCCATCCTCATCCCGTGCGACAGAGTGGTCTGCAGCAG < 41bp 0.497777584027998 0.787970988482053 0.08517516 0.16437697 prediction 0.575941976964107 Functional Gain - MGMT ENSG00000170430 CDS Human protein_coding chr10:131565072 chr10:131565073 nonsynonymous SNV 0.390 4 22 hm5C_associated_SNPs_102936 0 0 1 0 1 MGMT chr10:131565052 3'AG 131565052 Downstream 22bp
chr5 113831826 113831826 1 - A T LUAD 113831830 - 113831810 113831850 41 CTGTGGAAGAGGACCGCCGCCTCCTGGACGAGGACCGGGAC CTGTGGAAGAGGACCGCCGCCTCCAGGACGAGGACCGGGAC < 41bp 0.480659664474829 0.787962513404934 0.08195895 0.8995864 prediction 0.575925026809868 Functional Gain - KCNN2 ENSG00000080709 CDS Human protein_coding chr5:113831830 chr5:113831826 nonsynonymous SNV 0.987 5 25 hm5C_associated_SNPs_102937 0 0 0 0 2 KCNN2 chr5:113831799 5'GT 113831799 Upstream 28bp
chr5 113831826 113831826 1 - A T LUAD 113831830 - 113831810 113831850 41 CTGTGGAAGAGGACCGCCGCCTCCTGGACGAGGACCGGGAC CTGTGGAAGAGGACCGCCGCCTCCAGGACGAGGACCGGGAC < 41bp 0.480659664474829 0.787962513404934 0.08195895 0.8995864 prediction 0.575925026809868 Functional Gain - KCNN2 ENSG00000080709 CDS Human protein_coding chr5:113831830 chr5:113831826 nonsynonymous SNV 0.987 5 25 hm5C_associated_SNPs_102937 0 0 0 0 2 KCNN2 chr5:113831875 3'AG 113831875 Downstream 50bp
chr10 95400215 95400215 1 + C G LUAD 95400214 + 95400194 95400234 41 CATCTTCTTTTAGGTTCTTACCAGATGGATGTACACTGTGA CATCTTCTTTTAGGTTCTTACGAGATGGATGTACACTGTGA < 41bp 0.48741591274889 0.787958145596063 0.51770353 0.88087916 prediction 0.575916291192125 Functional Gain - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95400214 chr10:95400215 synonymous SNV . 0 22 hm5C_associated_SNPs_102939 0 0 0 0 2 PDE6C chr10:95400207 3'AG 95400207 Downstream 9bp
chr10 95400215 95400215 1 + C G LUAD 95400214 + 95400194 95400234 41 CATCTTCTTTTAGGTTCTTACCAGATGGATGTACACTGTGA CATCTTCTTTTAGGTTCTTACGAGATGGATGTACACTGTGA < 41bp 0.48741591274889 0.787958145596063 0.51770353 0.88087916 prediction 0.575916291192125 Functional Gain - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95400214 chr10:95400215 synonymous SNV . 0 22 hm5C_associated_SNPs_102939 0 0 0 0 2 PDE6C chr10:95400314 5'GT 95400314 Upstream 100bp
chr19 55362708 55362708 1 + T A LUSC 55362704 + 55362684 55362724 41 TGCTGCAGGGGGCCTGGCCACTCATGGGTGAGTCCGTCCCC TGCTGCAGGGGGCCTGGCCACTCAAGGGTGAGTCCGTCCCC < 41bp 0.517161834521304 0.805105691497803 0.27816778 0.4010046 prediction 0.575887713952998 Functional Gain - KIR3DL2 ENSG00000240403 CDS Human protein_coding chr19:55362704 chr19:55362708 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_102940 0 0 0 0 1 KIR3DL2 chr19:55362710 5'GT 55362710 Upstream 3bp
chr8 21958174 21958174 1 + C A UCEC 21958170 + 21958150 21958190 41 CCCCACGAGGGGATCATCCACAGCCTGGTCCTGCGCAACCT CCCCACGAGGGGATCATCCACAGCATGGTCCTGCGCAACCT < 41bp 0.621989171713718 0.909913840602132 0.73300815 0.7280913 prediction 0.575849337776828 Functional Gain - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21958170 chr8:21958174 nonsynonymous SNV 0.021 2 25 hm5C_associated_SNPs_102942 0 0 1 0 2 FAM160B2 chr8:21958105 3'AG 21958105 Downstream 70bp
chr8 21958174 21958174 1 + C A UCEC 21958170 + 21958150 21958190 41 CCCCACGAGGGGATCATCCACAGCCTGGTCCTGCGCAACCT CCCCACGAGGGGATCATCCACAGCATGGTCCTGCGCAACCT < 41bp 0.621989171713718 0.909913840602132 0.73300815 0.7280913 prediction 0.575849337776828 Functional Gain - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21958170 chr8:21958174 nonsynonymous SNV 0.021 2 25 hm5C_associated_SNPs_102942 0 0 1 0 2 FAM160B2 chr8:21958250 5'GT 21958250 Upstream 77bp
chr1 161480706 161480706 1 + T A BLCA 161480702 + 161480682 161480722 41 TGCTGTAGCAGCCATTGTTGCTGCTGTAGTGGCCTTGATCT TGCTGTAGCAGCCATTGTTGCTGCAGTAGTGGCCTTGATCT < 41bp 0.53359297740455 0.821515099507754 0.21938625 0.26807293 prediction 0.575844244206408 Functional Gain - FCGR2A ENSG00000143226 CDS Human protein_coding chr1:161480702 chr1:161480706 synonymous SNV . 0 25 hm5C_associated_SNPs_102944 0 0 1 0 2 FCGR2A chr1:161480624 3'AG 161480624 Downstream 83bp
chr1 161480706 161480706 1 + T A BLCA 161480702 + 161480682 161480722 41 TGCTGTAGCAGCCATTGTTGCTGCTGTAGTGGCCTTGATCT TGCTGTAGCAGCCATTGTTGCTGCAGTAGTGGCCTTGATCT < 41bp 0.53359297740455 0.821515099507754 0.21938625 0.26807293 prediction 0.575844244206408 Functional Gain - FCGR2A ENSG00000143226 CDS Human protein_coding chr1:161480702 chr1:161480706 synonymous SNV . 0 25 hm5C_associated_SNPs_102944 0 0 1 0 2 FCGR2A chr1:161480746 5'GT 161480746 Upstream 41bp
chr17 56274592 56274592 1 + C A rs577707337 56274588 + 56274568 56274608 41 ACCCCTGTCTCCTCACCAACCGCTCGGCGCGCATCCCCTGC ACCCCTGTCTCCTCACCAACCGCTAGGCGCGCATCCCCTGC < 41bp 0.371675930839527 0.787884650379456 0.048190534 0.21516588 prediction 0.575769300758912 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56274588 chr17:56274592 stopgain 0.833 0 25 hm5C_associated_SNPs_102946 0 0 0 0 1 EPX chr17:56274618 5'GT 56274618 Upstream 27bp
chr17 18392309 18392309 1 + C A UCEC 18392305 + 18392285 18392325 41 TTCTCCACGGTGCCGTTCTCCCAGCCTGTCTGTTTCCCACC TTCTCCACGGTGCCGTTCTCCCAGACTGTCTGTTTCCCACC < 41bp 0.395504650447699 0.787879246563313 0.37174785 0.39911717 prediction 0.575758493126626 Functional Gain - LGALS9C ENSG00000171916 CDS Human protein_coding chr17:18392305 chr17:18392309 nonsynonymous SNV 0.062 0 25 hm5C_associated_SNPs_102947 0 0 0 0 2 LGALS9C chr17:18392255 3'AG 18392255 Downstream 55bp
chr17 18392309 18392309 1 + C A UCEC 18392305 + 18392285 18392325 41 TTCTCCACGGTGCCGTTCTCCCAGCCTGTCTGTTTCCCACC TTCTCCACGGTGCCGTTCTCCCAGACTGTCTGTTTCCCACC < 41bp 0.395504650447699 0.787879246563313 0.37174785 0.39911717 prediction 0.575758493126626 Functional Gain - LGALS9C ENSG00000171916 CDS Human protein_coding chr17:18392305 chr17:18392309 nonsynonymous SNV 0.062 0 25 hm5C_associated_SNPs_102947 0 0 0 0 2 LGALS9C chr17:18392350 5'GT 18392350 Upstream 42bp
chr1 158152898 158152898 1 + C A LUAD 158152894 + 158152874 158152914 41 GGGGAGGCAGCTGGCCTGTCCTGTCGGGTGAAGCACAGCAG GGGGAGGCAGCTGGCCTGTCCTGTAGGGTGAAGCACAGCAG < 41bp 0.384031350180153 0.787866084734616 0.50877917 0.801788 prediction 0.575732169469232 Functional Gain - CD1D ENSG00000158473 CDS Human protein_coding chr1:158152894 chr1:158152898 synonymous SNV . 0 25 hm5C_associated_SNPs_102950 0 0 0 0 1 CD1D chr1:158152946 5'GT 158152946 Upstream 49bp
chr1 241725563 241725563 1 + C A UCEC 241725559 + 241725539 241725579 41 ATCTCACCTGATGAAGAAACCTCGCTTTGATTACAGTCAGC ATCTCACCTGATGAAGAAACCTCGATTTGATTACAGTCAGC < 41bp 0.374244824055197 0.787862316499738 0.17905176 0.49810767 prediction 0.575724632999477 Functional Gain - KMO ENSG00000117009 CDS Human protein_coding chr1:241725559 chr1:241725563 synonymous SNV . 0 25 hm5C_associated_SNPs_102951 0 0 0 0 2 KMO chr1:241725467 3'AG 241725467 Downstream 97bp
chr1 241725563 241725563 1 + C A UCEC 241725559 + 241725539 241725579 41 ATCTCACCTGATGAAGAAACCTCGCTTTGATTACAGTCAGC ATCTCACCTGATGAAGAAACCTCGATTTGATTACAGTCAGC < 41bp 0.374244824055197 0.787862316499738 0.17905176 0.49810767 prediction 0.575724632999477 Functional Gain - KMO ENSG00000117009 CDS Human protein_coding chr1:241725559 chr1:241725563 synonymous SNV . 0 25 hm5C_associated_SNPs_102951 0 0 0 0 2 KMO chr1:241725632 5'GT 241725632 Upstream 70bp
chr10 99211445 99211445 1 + C A UCEC 99211441 + 99211421 99211461 41 CTCGTAGGAACCATGCGAGGCCAGCGGAGCCTGCTGCTGGG CTCGTAGGAACCATGCGAGGCCAGAGGAGCCTGCTGCTGGG < 41bp 0.405301443820527 0.787853901730401 0.71758926 0.930196 prediction 0.575707803460802 Functional Gain - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99211441 chr10:99211445 synonymous SNV . 0 25 hm5C_associated_SNPs_102953 0 0 1 0 1 ZDHHC16 chr10:99211428 3'AG 99211428 Downstream 18bp
chr19 58991585 58991585 1 + C A rs112871920 58991581 + 58991561 58991601 41 CACCTGGCTGCCCAGAGGCCCAGCCGCCCCAGGGCCCAGGG CACCTGGCTGCCCAGAGGCCCAGCAGCCCCAGGGCCCAGGG < 41bp 0.592599829398917 0.880418160211369 0.44101748 0.6497821 prediction 0.575636661624905 Functional Gain - ZNF446 ENSG00000083838 CDS Human protein_coding chr19:58991581 chr19:58991585 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_102958 0 0 0 0 1 ZNF446 chr19:58991543 3'AG 58991543 Downstream 43bp
chr16 28943864 28943864 1 + C A LUSC 28943860 + 28943840 28943880 41 TCTCAACAGATGGGGGGCTTCTACCTGTGCCAGCCGGGGCC TCTCAACAGATGGGGGGCTTCTACATGTGCCAGCCGGGGCC < 41bp 0.626093215332049 0.913848629771967 0.30409056 0.9449487 prediction 0.575510828879836 Functional Gain - CD19 ENSG00000177455 CDS Human protein_coding chr16:28943860 chr16:28943864 nonsynonymous SNV 0.992 3 25 hm5C_associated_SNPs_102961 0 0 0 0 1 CD19 chr16:28943933 5'GT 28943933 Upstream 70bp
chr3 142523415 142523415 1 + T G LUSC 142523412 + 142523392 142523432 41 TGCTATATGATTAGTAGCCTCAGTAAGTGGATTTGCTCTCA TGCTATATGATTAGTAGCCTCAGGAAGTGGATTTGCTCTCA < 41bp 0.589584726478248 0.877317265698401 0.155253 0.86207604 prediction 0.575465078440307 Functional Gain - TRPC1 ENSG00000144935 CDS Human protein_coding chr3:142523412 chr3:142523415 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_102962 0 0 0 0 1 TRPC1 chr3:142523472 5'GT 142523472 Upstream 58bp
chr18 74963084 74963084 1 + C A LUAD 74963080 + 74963060 74963100 41 TTCTGCTGGGAGCAGTGGCCCGACCCTCGCCACAAGAAGGC TTCTGCTGGGAGCAGTGGCCCGACACTCGCCACAAGAAGGC < 41bp 0.391799199026815 0.787683492116788 0.12683111 0.16717932 prediction 0.575366984233576 Functional Gain - GALR1 ENSG00000166573 CDS Human protein_coding chr18:74963080 chr18:74963084 nonsynonymous SNV 0.831 0 25 hm5C_associated_SNPs_102965 0 0 0 0 1 GALR1 chr18:74963170 5'GT 74963170 Upstream 87bp
chr19 55333048 55333048 1 + C A LUAD 55333044 + 55333024 55333064 41 ATATGAGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCAAGG ATATGAGAAACCTTCTCTCTCAGCACAGCCGGGCCCCAAGG < 41bp 0.396321583755031 0.787665540563293 0.8604656 0.63176763 prediction 0.575331081126585 Functional Gain - KIR3DL1 ENSG00000167633 CDS Human protein_coding chr19:55333044 chr19:55333048 synonymous SNV . 0 25 hm5C_associated_SNPs_102967 0 0 0 0 1 KIR3DL1 chr19:55333020 3'AG 55333020 Downstream 29bp
chr10 26506850 26506850 1 + C A LUAD 26506846 + 26506826 26506866 41 GCGGGCCGCCGCCCGGAAGGCCGCCTGCGCCTGCGACCAGA GCGGGCCGCCGCCCGGAAGGCCGCATGCGCCTGCGACCAGA < 41bp 0.617625767257975 0.905285182578818 0.11722079 0.17707825 prediction 0.575318830641687 Functional Gain - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26506846 chr10:26506850 synonymous SNV . 0 25 hm5C_associated_SNPs_102968 0 0 0 0 2 GAD2 chr10:26506771 3'AG 26506771 Downstream 80bp
chr10 26506850 26506850 1 + C A LUAD 26506846 + 26506826 26506866 41 GCGGGCCGCCGCCCGGAAGGCCGCCTGCGCCTGCGACCAGA GCGGGCCGCCGCCCGGAAGGCCGCATGCGCCTGCGACCAGA < 41bp 0.617625767257975 0.905285182578818 0.11722079 0.17707825 prediction 0.575318830641687 Functional Gain - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26506846 chr10:26506850 synonymous SNV . 0 25 hm5C_associated_SNPs_102968 0 0 0 0 2 GAD2 chr10:26506920 5'GT 26506920 Upstream 71bp
chrX 55248301 55248301 1 + T A LUAD 55248297 + 55248277 55248317 41 GATCAAAAATGAAGGAGCACCTGCTGTTCAAGGTGAAGGGA GATCAAAAATGAAGGAGCACCTGCAGTTCAAGGTGAAGGGA < 41bp 0.538577139591914 0.826233366232658 0.13215625 0.28115922 prediction 0.575312453281486 Functional Gain - PAGE5 ENSG00000158639 CDS Human protein_coding chrX:55248297 chrX:55248301 synonymous SNV . 0 25 hm5C_associated_SNPs_102969 0 0 0 0 1 PAGE5 chrX:55248308 5'GT 55248308 Upstream 8bp
chr19 50927005 50927005 1 + C G rs117090800 50927004 + 50926984 50927024 41 TGGCCCCGAGGGGAAGGGATCCGAGGCAGGTATGCGGGAGT TGGCCCCGAGGGGAAGGGATCGGAGGCAGGTATGCGGGAGT < 41bp 0.522760898843742 0.810408620196277 0.9145504 0.9395978 prediction 0.57529544270507 Functional Gain - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50927004 chr19:50927005 synonymous SNV . 0 22 hm5C_associated_SNPs_102971 0 0 0 0 1 SPIB chr19:50927012 5'GT 50927012 Upstream 8bp
chr1 74737359 74737359 1 + C A UCEC 74737355 + 74737335 74737375 41 GGTTGGATACGGTGGCCTCACTGCCCTCCATATTGCTACAA GGTTGGATACGGTGGCCTCACTGCACTCCATATTGCTACAA < 41bp 0.624659867311253 0.912289504572322 0.10154781 0.16818288 prediction 0.575259274522138 Functional Gain - FPGT-TNNI3K;TNNI3K ENSG00000116783;ENSG00000259030 CDS Human other chr1:74737355 chr1:74737359 synonymous SNV . 0 25 hm5C_associated_SNPs_102973 0 0 0 0 2 FPGT-TNNI3K;TNNI3K chr1:74737282 3'AG 74737282 Downstream 78bp
chr1 74737359 74737359 1 + C A UCEC 74737355 + 74737335 74737375 41 GGTTGGATACGGTGGCCTCACTGCCCTCCATATTGCTACAA GGTTGGATACGGTGGCCTCACTGCACTCCATATTGCTACAA < 41bp 0.624659867311253 0.912289504572322 0.10154781 0.16818288 prediction 0.575259274522138 Functional Gain - FPGT-TNNI3K;TNNI3K ENSG00000116783;ENSG00000259030 CDS Human other chr1:74737355 chr1:74737359 synonymous SNV . 0 25 hm5C_associated_SNPs_102973 0 0 0 0 2 FPGT-TNNI3K;TNNI3K chr1:74737392 5'GT 74737392 Upstream 34bp
chr5 10256161 10256161 1 + T A rs1042392 10256157 + 10256137 10256177 41 CGATGGCTATGAGCAGGCTGCTCGTGTTGCTATTGAACACC CGATGGCTATGAGCAGGCTGCTCGAGTTGCTATTGAACACC < 41bp 0.551174819737981 0.838803010327396 0.16965804 0.31038547 prediction 0.575256381178831 Functional Gain - CCT5 ENSG00000150753 CDS Human protein_coding chr5:10256157 chr5:10256161 synonymous SNV . 0 25 hm5C_associated_SNPs_102974 0 0 1 0 1 CCT5 chr5:10256067 3'AG 10256067 Downstream 95bp
chr15 79603747 79603747 1 + C G LUSC 79603746 + 79603726 79603766 41 GGAGCAGGGCGTGAAGTTCTCCCTGGATTACCAGGTGAGGC GGAGCAGGGCGTGAAGTTCTCGCTGGATTACCAGGTGAGGC < 41bp 0.507775745317802 0.795403642765582 0.08158517 0.13980046 prediction 0.57525579489556 Functional Gain - TMED3 ENSG00000166557 CDS Human protein_coding chr15:79603746 chr15:79603747 synonymous SNV . 0 22 hm5C_associated_SNPs_102975 0 0 1 2 1 TMED3 chr15:79603759 5'GT 79603759 Upstream 13bp
chr3 52816058 52816058 1 + C A LUAD 52816054 + 52816034 52816074 41 TTCAAGGTGACCTACGATGTCAGTCGAGACAAGATCTGCGA TTCAAGGTGACCTACGATGTCAGTAGAGACAAGATCTGCGA < 41bp 0.384210689978254 0.787625375404404 0.25727612 0.34133035 prediction 0.575250750808807 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52816054 chr3:52816058 synonymous SNV . 0 25 hm5C_associated_SNPs_102976 0 0 0 0 1 ITIH1 chr3:52816081 5'GT 52816081 Upstream 24bp
chr3 189608606 189608606 1 + T G UCEC 189608604 + 189608584 189608624 41 AGCGAGGTTGGGCTGTTCATCATGTCTGGACTATTTCACGA AGCGAGGTTGGGCTGTTCATCAGGTCTGGACTATTTCACGA < 41bp 0.477445099451564 0.787577772179005 0.17879808 0.89995533 prediction 0.575155544358011 Functional Gain - TP63 ENSG00000073282 CDS Human protein_coding chr3:189608604 chr3:189608606 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_102979 1 0 0 0 2 TP63 chr3:189608578 3'AG 189608578 Downstream 29bp
chr3 189608606 189608606 1 + T G UCEC 189608604 + 189608584 189608624 41 AGCGAGGTTGGGCTGTTCATCATGTCTGGACTATTTCACGA AGCGAGGTTGGGCTGTTCATCAGGTCTGGACTATTTCACGA < 41bp 0.477445099451564 0.787577772179005 0.17879808 0.89995533 prediction 0.575155544358011 Functional Gain - TP63 ENSG00000073282 CDS Human protein_coding chr3:189608604 chr3:189608606 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_102979 1 0 0 0 2 TP63 chr3:189608671 5'GT 189608671 Upstream 66bp
chr19 33605316 33605316 1 + C G rs148807065 33605315 + 33605295 33605335 41 AGAGCATGCACCAGAATTATCCGCAAATCAGGTATTTGGGG AGAGCATGCACCAGAATTATCGGCAAATCAGGTATTTGGGG < 41bp 0.502705508085768 0.790273618243776 0.20093188 0.90287703 prediction 0.575136220316015 Functional Gain - GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33605315 chr19:33605316 synonymous SNV . 0 22 hm5C_associated_SNPs_102981 0 0 1 0 1 GPATCH1 chr19:33605325 5'GT 33605325 Upstream 10bp
chr17 48618243 48618243 1 + C G rs145595403 48618242 + 48618222 48618262 41 CCCTCAGGAACCGTCCTGTCCCGAAGCCAGCCCTGGGATCT CCCTCAGGAACCGTCCTGTCCGGAAGCCAGCCCTGGGATCT < 41bp 0.532894119088717 0.820440896609505 0.64834785 0.57392204 prediction 0.575093555041575 Functional Gain - EPN3 ENSG00000049283 CDS Human protein_coding chr17:48618242 chr17:48618243 nonsynonymous SNV 0.978 0 22 hm5C_associated_SNPs_102983 0 0 0 0 1 EPN3 chr17:48618154 3'AG 48618154 Downstream 90bp
chr14 23982470 23982470 1 + C A rs534173879 23982466 + 23982446 23982486 41 GGGCCATCGTCTGCCTCCATCACCCCTCCGCCCGCCCGCCT GGGCCATCGTCTGCCTCCATCACCACTCCGCCCGCCCGCCT < 41bp 0.442220273320196 0.787525246732598 0.08047491 0.14567778 prediction 0.575050493465196 Functional Gain - NGDN;ZFHX2 ENSG00000157306 ncRNA_exonic Human processed_transcript chr14:23982466 chr14:23982470 . . 0 25 hm5C_associated_SNPs_102986 0 0 1 0 2 NGDN;ZFHX2 chr14:23982426 3'AG 23982426 Downstream 45bp
chr14 23982470 23982470 1 + C A rs534173879 23982466 + 23982446 23982486 41 GGGCCATCGTCTGCCTCCATCACCCCTCCGCCCGCCCGCCT GGGCCATCGTCTGCCTCCATCACCACTCCGCCCGCCCGCCT < 41bp 0.442220273320196 0.787525246732598 0.08047491 0.14567778 prediction 0.575050493465196 Functional Gain - NGDN;ZFHX2 ENSG00000157306 ncRNA_exonic Human processed_transcript chr14:23982466 chr14:23982470 . . 0 25 hm5C_associated_SNPs_102986 0 0 1 0 2 NGDN;ZFHX2 chr14:23982543 5'GT 23982543 Upstream 74bp
chr16 1412245 1412245 1 + T A rs147109185 1412241 + 1412221 1412261 41 TGGAAAAAGCAACCGGCTGGCCCATGTGTCCGAGCCGAGCA TGGAAAAAGCAACCGGCTGGCCCAAGTGTCCGAGCCGAGCA < 41bp 0.478228516007597 0.787481398173243 0.01765725 0.016095221 prediction 0.574962796346486 Functional Gain - GNPTG ENSG00000090581 CDS Human protein_coding chr16:1412241 chr16:1412245 nonsynonymous SNV 0.959 1 25 hm5C_associated_SNPs_102989 0 0 1 0 2 GNPTG chr16:1412207 3'AG 1412207 Downstream 39bp
chr16 1412245 1412245 1 + T A rs147109185 1412241 + 1412221 1412261 41 TGGAAAAAGCAACCGGCTGGCCCATGTGTCCGAGCCGAGCA TGGAAAAAGCAACCGGCTGGCCCAAGTGTCCGAGCCGAGCA < 41bp 0.478228516007597 0.787481398173243 0.01765725 0.016095221 prediction 0.574962796346486 Functional Gain - GNPTG ENSG00000090581 CDS Human protein_coding chr16:1412241 chr16:1412245 nonsynonymous SNV 0.959 1 25 hm5C_associated_SNPs_102989 0 0 1 0 2 GNPTG chr16:1412321 5'GT 1412321 Upstream 77bp
chr1 183184629 183184629 1 + T A LIHC 183184625 + 183184605 183184645 41 TGTGACAACTCCGGACGGTGCAGCTGTAAACCAGGTGTGAC TGTGACAACTCCGGACGGTGCAGCAGTAAACCAGGTGTGAC < 41bp 0.469475291341536 0.78744573451255 0.1208643 0.39766064 prediction 0.5748914690251 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183184625 chr1:183184629 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_102994 0 0 0 0 2 LAMC2 chr1:183184588 3'AG 183184588 Downstream 42bp
chr1 183184629 183184629 1 + T A LIHC 183184625 + 183184605 183184645 41 TGTGACAACTCCGGACGGTGCAGCTGTAAACCAGGTGTGAC TGTGACAACTCCGGACGGTGCAGCAGTAAACCAGGTGTGAC < 41bp 0.469475291341536 0.78744573451255 0.1208643 0.39766064 prediction 0.5748914690251 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183184625 chr1:183184629 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_102994 0 0 0 0 2 LAMC2 chr1:183184723 5'GT 183184723 Upstream 95bp
chr19 51738913 51738913 1 + C A LUAD 51738909 + 51738889 51738929 41 GGGCAGGAATGACACCCACCCTACCACAGGGTCAGCCTCCC GGGCAGGAATGACACCCACCCTACAACAGGGTCAGCCTCCC < 41bp 0.370715991023608 0.787439421059543 0.018360436 0.85996 prediction 0.574878842119087 Functional Gain - CD33 ENSG00000105383 CDS Human protein_coding chr19:51738909 chr19:51738913 synonymous SNV . 0 25 hm5C_associated_SNPs_102995 0 0 0 0 1 CD33 chr19:51738931 5'GT 51738931 Upstream 19bp
chr6 25770337 25770337 1 + C G LUSC 25770336 + 25770316 25770356 41 CCTGAAATCCAGGGAATCATCCTCAGCTCCCTCAACTATGG CCTGAAATCCAGGGAATCATCGTCAGCTCCCTCAACTATGG < 41bp 0.487653331713774 0.787399533456512 0.04981172 0.18462285 prediction 0.574799066913024 Functional Gain - SLC17A4 ENSG00000146039 CDS Human protein_coding chr6:25770336 chr6:25770337 nonsynonymous SNV 0.979 4 22 hm5C_associated_SNPs_102998 0 0 0 0 1 SLC17A4 chr6:25770295 3'AG 25770295 Downstream 43bp
chr17 33454100 33454100 1 + T A rs541247303 33454096 + 33454076 33454116 41 AGAGGATTCAGACTGCAGCTCTGATGAGACCAGCATCTCTG AGAGGATTCAGACTGCAGCTCTGAAGAGACCAGCATCTCTG < 41bp 0.469626727944013 0.787383891536786 0.15458232 0.14175245 prediction 0.574767783073572 Functional Gain - FNDC8 ENSG00000073598 CDS Human protein_coding chr17:33454096 chr17:33454100 nonsynonymous SNV 0.462 2 25 hm5C_associated_SNPs_103001 0 0 0 0 1 FNDC8 chr17:33454061 3'AG 33454061 Downstream 40bp
chr8 42179668 42179668 1 + T A UCEC 42179664 + 42179644 42179684 41 AAGTGCGAGTGATCTATACGCAGCTCAGGTATGAGCCCCGA AAGTGCGAGTGATCTATACGCAGCACAGGTATGAGCCCCGA < 41bp 0.486116354973312 0.787372038015702 0.27244937 0.22342885 prediction 0.574744076031404 Functional Gain - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42179664 chr8:42179668 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_103003 0 0 1 0 2 IKBKB chr8:42179572 3'AG 42179572 Downstream 97bp
chr8 42179668 42179668 1 + T A UCEC 42179664 + 42179644 42179684 41 AAGTGCGAGTGATCTATACGCAGCTCAGGTATGAGCCCCGA AAGTGCGAGTGATCTATACGCAGCACAGGTATGAGCCCCGA < 41bp 0.486116354973312 0.787372038015702 0.27244937 0.22342885 prediction 0.574744076031404 Functional Gain - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42179664 chr8:42179668 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_103003 0 0 1 0 2 IKBKB chr8:42179671 5'GT 42179671 Upstream 4bp
chr19 8117950 8117950 1 + T A LIHC 8117946 + 8117926 8117966 41 CCTGCAGCATGAACCTGTGGCTCCTGGCCTGCCTGGTGGCC CCTGCAGCATGAACCTGTGGCTCCAGGCCTGCCTGGTGGCC < 41bp 0.555416882441829 0.842786472000492 0.07596293 0.9101455 prediction 0.574739179117326 Functional Gain - CCL25 ENSG00000131142 CDS Human protein_coding chr19:8117946 chr19:8117950 nonsynonymous SNV 0.842 3 25 hm5C_associated_SNPs_103004 0 0 0 0 1 CCL25 chr19:8118006 5'GT 8118006 Upstream 57bp
chr20 5297197 5297197 1 - A C rs191193149 5297200 - 5297180 5297220 41 CCCGCCTGCGCCCAACCACACTGTGACTCTCGATCCGGCTT CCCGCCTGCGCCCAACCACACTGGGACTCTCGATCCGGCTT < 41bp 0.535154429184131 0.822517155363076 0.32564855 0.8839022 prediction 0.57472545235789 Functional Gain - PROKR2 ENSG00000101292 UTR5 Human protein_coding chr20:5297200 chr20:5297197 . . 0 24 hm5C_associated_SNPs_103005 0 0 1 0 1 PROKR2 chr20:5297140 5'GT 5297140 Upstream 58bp
chr15 81429058 81429058 1 + C G LUAD 81429057 + 81429037 81429077 41 AGCGCAGTTCAAGCCAAGACCCCAATTGGCAGAAACACTTT AGCGCAGTTCAAGCCAAGACCGCAATTGGCAGAAACACTTT < 41bp 0.507090279065141 0.794424516153127 0.037210435 0.0805842 prediction 0.574668474175972 Functional Gain - CFAP161 ENSG00000156206 CDS Human protein_coding chr15:81429057 chr15:81429058 nonsynonymous SNV 0.004 4 22 hm5C_associated_SNPs_103007 0 0 0 0 1 CFAP161 chr15:81429089 5'GT 81429089 Upstream 32bp
chr3 46658712 46658712 1 + C A rs186252375 46658708 + 46658688 46658728 41 TACACCCGTCGGGAGGTCTTCTGCCGGAACACCTGCCATGA TACACCCGTCGGGAGGTCTTCTGCAGGAACACCTGCCATGA < 41bp 0.599930100680733 0.887263881419516 0.23944566 0.2169618 prediction 0.574667561477566 Functional Gain - FAM240A ENSG00000241186;ENSG00000256354 intergenic Human other chr3:46658708 chr3:46658712 . . 0 25 hm5C_associated_SNPs_103008 0 0 0 0 1 FAM240A chr3:46658673 3'AG 46658673 Downstream 40bp
chr2 95947105 95947105 1 + C A UCEC 95947101 + 95947081 95947121 41 TGCCAGAGCTGGGAGAACGGCGAGCTCTTTGAGGTAGGCCT TGCCAGAGCTGGGAGAACGGCGAGATCTTTGAGGTAGGCCT < 41bp 0.400077504659373 0.787290548811438 0.6519464 0.77461755 prediction 0.574581097622876 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95947101 chr2:95947105 nonsynonymous SNV 0.272 0 25 hm5C_associated_SNPs_103012 0 0 0 0 1 PROM2 chr2:95947113 5'GT 95947113 Upstream 9bp
chrX 99854535 99854535 1 + C A HNSC 99854531 + 99854511 99854551 41 AATGGAATAGAATTTGATCCCATGCTGGATGAGAGAGGTTA AATGGAATAGAATTTGATCCCATGATGGATGAGAGAGGTTA < 41bp 0.459210515503196 0.787283121418017 0.040518224 0.06718895 prediction 0.574566242836035 Functional Gain - TNMD ENSG00000000005 CDS Human protein_coding chrX:99854531 chrX:99854535 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_103014 0 0 0 0 1 TNMD chrX:99854505 3'AG 99854505 Downstream 31bp
chr11 44102794 44102794 1 + C A rs3213455 44102790 + 44102770 44102810 41 AGAAAACCAGGATGTGGCCACTGCCGTGGCTTCCCTCTGCC AGAAAACCAGGATGTGGCCACTGCAGTGGCTTCCCTCTGCC < 41bp 0.394678005072058 0.787276132288317 0.13000035 0.8157567 prediction 0.574552264576634 Functional Gain - ACCS ENSG00000110455 CDS Human protein_coding chr11:44102790 chr11:44102794 synonymous SNV . 0 25 hm5C_associated_SNPs_103015 0 0 0 0 2 ACCS chr11:44102729 3'AG 44102729 Downstream 66bp
chr11 44102794 44102794 1 + C A rs3213455 44102790 + 44102770 44102810 41 AGAAAACCAGGATGTGGCCACTGCCGTGGCTTCCCTCTGCC AGAAAACCAGGATGTGGCCACTGCAGTGGCTTCCCTCTGCC < 41bp 0.394678005072058 0.787276132288317 0.13000035 0.8157567 prediction 0.574552264576634 Functional Gain - ACCS ENSG00000110455 CDS Human protein_coding chr11:44102790 chr11:44102794 synonymous SNV . 0 25 hm5C_associated_SNPs_103015 0 0 0 0 2 ACCS chr11:44102870 5'GT 44102870 Upstream 77bp
chr7 100187937 100187937 1 - G C OV 100187938 - 100187918 100187958 41 CCAGGGCCGGACTCCAGAACCCTGATCTTGGAGGCGCGGAC CCAGGGCCGGACTCCAGAACCGTGATCTTGGAGGCGCGGAC < 41bp 0.478649777434822 0.787203026861077 0.29818848 0.72427624 prediction 0.574406053722155 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100187938 chr7:100187937 nonsynonymous SNV 0.989 0 22 hm5C_associated_SNPs_103023 0 0 0 0 2 FBXO24 chr7:100187853 5'GT 100187853 Upstream 85bp
chr7 100187937 100187937 1 - G C OV 100187938 - 100187918 100187958 41 CCAGGGCCGGACTCCAGAACCCTGATCTTGGAGGCGCGGAC CCAGGGCCGGACTCCAGAACCGTGATCTTGGAGGCGCGGAC < 41bp 0.478649777434822 0.787203026861077 0.29818848 0.72427624 prediction 0.574406053722155 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100187938 chr7:100187937 nonsynonymous SNV 0.989 0 22 hm5C_associated_SNPs_103023 0 0 0 0 2 FBXO24 chr7:100187954 3'AG 100187954 Downstream 18bp
chr5 161576257 161576257 1 + T A CESC 161576253 + 161576233 161576273 41 TCTGCTCTGGTGGAGTATGGCACCTTGCATTATTTTGTCAG TCTGCTCTGGTGGAGTATGGCACCATGCATTATTTTGTCAG < 41bp 0.459003373779408 0.787194109566809 0.2285186 0.27509156 prediction 0.574388219133618 Functional Gain - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161576253 chr5:161576257 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_103024 0 0 0 0 1 GABRG2 chr5:161576319 5'GT 161576319 Upstream 63bp
chr16 56782311 56782311 1 + C A rs573467287 56782307 + 56782287 56782327 41 TGCGTTCCCGTACCCTAACACGCACGTCCCAGGAGACGGCA TGCGTTCCCGTACCCTAACACGCAAGTCCCAGGAGACGGCA < 41bp 0.39265856171506 0.787192771560695 0.18032372 0.16296232 prediction 0.57438554312139 Functional Gain - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56782307 chr16:56782311 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_103025 0 0 1 0 1 NUP93 chr16:56782338 5'GT 56782338 Upstream 28bp
chr2 233322328 233322328 1 + T G STAD 233322326 + 233322306 233322346 41 TTCCCATGGGGACCCCAGACCCTGAGTACCCAGCTGATGCC TTCCCATGGGGACCCCAGACCCGGAGTACCCAGCTGATGCC < 41bp 0.440110260896357 0.787170510190176 0.0569849 0.87273157 prediction 0.574341020380352 Functional Gain - ALPI ENSG00000163295 CDS Human protein_coding chr2:233322326 chr2:233322328 synonymous SNV . 0 23 hm5C_associated_SNPs_103027 0 0 0 0 2 ALPI chr2:233322275 3'AG 233322275 Downstream 54bp
chr2 233322328 233322328 1 + T G STAD 233322326 + 233322306 233322346 41 TTCCCATGGGGACCCCAGACCCTGAGTACCCAGCTGATGCC TTCCCATGGGGACCCCAGACCCGGAGTACCCAGCTGATGCC < 41bp 0.440110260896357 0.787170510190176 0.0569849 0.87273157 prediction 0.574341020380352 Functional Gain - ALPI ENSG00000163295 CDS Human protein_coding chr2:233322326 chr2:233322328 synonymous SNV . 0 23 hm5C_associated_SNPs_103027 0 0 0 0 2 ALPI chr2:233322409 5'GT 233322409 Upstream 82bp
chr12 102558286 102558286 1 + C A UCEC 102558282 + 102558262 102558302 41 TAGTGAATTCAAAGAATGACCTGGCTGTGGCTTATATTCTC TAGTGAATTCAAAGAATGACCTGGATGTGGCTTATATTCTC < 41bp 0.415088834220583 0.787164442536202 0.04232171 0.084237695 prediction 0.574328885072405 Functional Gain - PARPBP ENSG00000185480 CDS Human protein_coding chr12:102558282 chr12:102558286 nonsynonymous SNV 0.991 4 25 hm5C_associated_SNPs_103028 0 0 1 0 1 PARPBP chr12:102558216 3'AG 102558216 Downstream 71bp
chr22 29706927 29706927 1 + C A rs61737776 29706923 + 29706903 29706943 41 CCTGGGAGTGAGCGCCGGGGCTCCCGGCCTGAGATGACTCC CCTGGGAGTGAGCGCCGGGGCTCCAGGCCTGAGATGACTCC < 41bp 0.375652444791335 0.787131813795322 0.17290074 0.54520696 prediction 0.574263627590643 Functional Gain - GAS2L1 ENSG00000185340 CDS Human protein_coding chr22:29706923 chr22:29706927 synonymous SNV . 0 25 hm5C_associated_SNPs_103034 0 0 0 0 1 GAS2L1 chr22:29706988 5'GT 29706988 Upstream 62bp
chr5 156671418 156671418 1 + T A HNSC 156671414 + 156671394 156671434 41 GACTTTTTGCTGCAGAGACCCTGCTGGGCATGTGTCTGGAT GACTTTTTGCTGCAGAGACCCTGCAGGGCATGTGTCTGGAT < 41bp 0.461172482417381 0.787111522195425 0.036992818 0.13083667 prediction 0.57422304439085 Functional Gain - ITK ENSG00000113263 CDS Human protein_coding chr5:156671414 chr5:156671418 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_103037 0 0 0 0 1 ITK chr5:156671488 5'GT 156671488 Upstream 71bp
chr9 42368601 42368601 1 + C A UCEC 42368597 + 42368577 42368617 41 CGCAGGAGCGGAGACCTGGACGCCCTGGACAAGCAGCACAG CGCAGGAGCGGAGACCTGGACGCCATGGACAAGCAGCACAG < 41bp 0.602882052397401 0.889984337168436 0.14842007 0.3520953 prediction 0.574204569542069 Functional Gain - ANKRD20A2;ANKRD20A3 ENSG00000183148 CDS Human protein_coding chr9:42368597 chr9:42368601 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_103039 0 0 0 0 1 ANKRD20A2;ANKRD20A3 chr9:42368617 5'GT 42368617 Upstream 17bp
chr3 113003370 113003370 1 + C G BLCA 113003369 + 113003349 113003389 41 CCCTCGGCTGCAGTGGGCTACCCGGGCATGAAGCCCCAGCA CCCTCGGCTGCAGTGGGCTACGCGGGCATGAAGCCCCAGCA < 41bp 0.485038497472835 0.787057750968965 0.9163554 0.9021629 prediction 0.57411550193793 Functional Gain - BOC ENSG00000144857 CDS Human protein_coding chr3:113003369 chr3:113003370 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_103046 0 0 0 0 1 BOC chr3:113003414 5'GT 113003414 Upstream 45bp
chr7 141427142 141427142 1 - A T BRCA 141427146 - 141427126 141427166 41 AACTGTATTTCTGGCCAGAGCTGCTGCAGAAGGTCTCTGTT AACTGTATTTCTGGCCAGAGCTGCAGCAGAAGGTCTCTGTT < 41bp 0.473006788631775 0.78705134380709 0.26572344 0.38329405 prediction 0.57410268761418 Functional Gain - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141427146 chr7:141427142 synonymous SNV . 0 25 hm5C_associated_SNPs_103048 0 0 0 0 1 WEE2 chr7:141427178 3'AG 141427178 Downstream 37bp
chr19 51825355 51825355 1 + C A rs61732615 51825351 + 51825331 51825371 41 GAGCCTGGAGTTCAACTCTCCTGCCGACAACTACACAGTGT GAGCCTGGAGTTCAACTCTCCTGCAGACAACTACACAGTGT < 41bp 0.379111973257574 0.787044616274213 0.3090385 0.5061148 prediction 0.574089232548425 Functional Gain - IGLON5 ENSG00000142549 CDS Human protein_coding chr19:51825351 chr19:51825355 synonymous SNV . 0 25 hm5C_associated_SNPs_103049 0 0 0 0 2 IGLON5 chr19:51825318 3'AG 51825318 Downstream 38bp
chr19 51825355 51825355 1 + C A rs61732615 51825351 + 51825331 51825371 41 GAGCCTGGAGTTCAACTCTCCTGCCGACAACTACACAGTGT GAGCCTGGAGTTCAACTCTCCTGCAGACAACTACACAGTGT < 41bp 0.379111973257574 0.787044616274213 0.3090385 0.5061148 prediction 0.574089232548425 Functional Gain - IGLON5 ENSG00000142549 CDS Human protein_coding chr19:51825351 chr19:51825355 synonymous SNV . 0 25 hm5C_associated_SNPs_103049 0 0 0 0 2 IGLON5 chr19:51825396 5'GT 51825396 Upstream 42bp
chr3 9506176 9506176 1 + T G rs147128913 9506174 + 9506154 9506194 41 AGCAGAATGTCACCAAGTTACTTCGGCCTCTGTCTCCAGTC AGCAGAATGTCACCAAGTTACTGCGGCCTCTGTCTCCAGTC < 41bp 0.460816997110444 0.7870354592793 0.2569738 0.35620868 prediction 0.574070918558599 Functional Gain - SETD5 ENSG00000168137 CDS Human protein_coding chr3:9506174 chr3:9506176 synonymous SNV . 0 23 hm5C_associated_SNPs_103050 0 0 1 0 1 SETD5 chr3:9506109 3'AG 9506109 Downstream 68bp
chr1 74664011 74664011 1 + C A LUAD 74664007 + 74663987 74664027 41 GAAGTATCGCTGCGAGAAGCCACCCAGCGAAAATTGCGGAG GAAGTATCGCTGCGAGAAGCCACCAAGCGAAAATTGCGGAG < 41bp 0.609863992034468 0.896897479735878 0.25802475 0.5924974 prediction 0.57406697540282 Functional Gain - FPGT;FPGT-TNNI3K ENSG00000116783;ENSG00000254685;ENSG00000259030 CDS Human other chr1:74664007 chr1:74664011 nonsynonymous SNV 0.958 0 25 hm5C_associated_SNPs_103051 0 0 0 0 1 FPGT;FPGT-TNNI3K chr1:74664044 5'GT 74664044 Upstream 34bp
chr7 128845065 128845065 1 + T A LUAD 128845061 + 128845041 128845081 41 CAGAATGAGGTGCAGAACATCAAGTTCAACAGTTCAGGCCA CAGAATGAGGTGCAGAACATCAAGATCAACAGTTCAGGCCA < 41bp 0.533181539336556 0.820205455484554 0.3442492 0.764843 prediction 0.574047832295997 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128845061 chr7:128845065 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103053 0 0 1 0 1 SMO chr7:128845044 3'AG 128845044 Downstream 22bp
chr1 161138933 161138933 1 + C G rs12735723 161138932 + 161138912 161138952 41 TCAGTGTTCTCAGAGGCCAGCCGGTCTGTGGGCTCAGCCTC TCAGTGTTCTCAGAGGCCAGCGGGTCTGTGGGCTCAGCCTC < 41bp 0.479627377669623 0.787017247902098 0.80561393 0.9175999 prediction 0.574034495804196 Functional Gain - PPOX ENSG00000143224 CDS Human protein_coding chr1:161138932 chr1:161138933 nonsynonymous SNV 0.767 3 22 hm5C_associated_SNPs_103054 1 0 1 0 1 PPOX chr1:161138973 5'GT 161138973 Upstream 41bp
chr3 10188246 10188246 1 + T A KIRC 10188242 + 10188222 10188262 41 CAGGGACACACGATGGGCTTCTGGTTAACCAAACTGAATTA CAGGGACACACGATGGGCTTCTGGATAACCAAACTGAATTA < 41bp 0.550227592102503 0.83723310282437 0.20079407 0.42158568 prediction 0.574011021443734 Functional Gain - VHL ENSG00000134086 CDS Human protein_coding chr3:10188242 chr3:10188246 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103055 0 0 1 0 2 VHL chr3:10188198 3'AG 10188198 Downstream 49bp
chr3 10188246 10188246 1 + T A KIRC 10188242 + 10188222 10188262 41 CAGGGACACACGATGGGCTTCTGGTTAACCAAACTGAATTA CAGGGACACACGATGGGCTTCTGGATAACCAAACTGAATTA < 41bp 0.550227592102503 0.83723310282437 0.20079407 0.42158568 prediction 0.574011021443734 Functional Gain - VHL ENSG00000134086 CDS Human protein_coding chr3:10188242 chr3:10188246 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103055 0 0 1 0 2 VHL chr3:10188320 5'GT 10188320 Upstream 75bp
chr5 80550975 80550975 1 + C A LUSC 80550971 + 80550951 80550991 41 TGGAGGGCCTCAAGGGGGACCTGGCTGGCCGCTACTACAAG TGGAGGGCCTCAAGGGGGACCTGGATGGCCGCTACTACAAG < 41bp 0.400279901556154 0.786993086968601 0.39380512 0.5614552 prediction 0.573986173937202 Functional Gain - CKMT2 ENSG00000131730 CDS Human protein_coding chr5:80550971 chr5:80550975 nonsynonymous SNV 0.986 1 25 hm5C_associated_SNPs_103057 0 0 0 0 1 CKMT2 chr5:80551033 5'GT 80551033 Upstream 59bp
chr19 45567668 45567668 1 + C A rs71352251 45567664 + 45567644 45567684 41 ACCTCCAGCTCCCGCTCCAGCTCTCGCTCCAGCTCCCGCTC ACCTCCAGCTCCCGCTCCAGCTCTAGCTCCAGCTCCCGCTC < 41bp 0.368884587172583 0.786990767425357 0.3585677 0.84228384 prediction 0.573981534850714 Functional Gain - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45567664 chr19:45567668 nonsynonymous SNV 0.761 0 25 hm5C_associated_SNPs_103059 0 0 1 0 1 CLASRP chr19:45567601 3'AG 45567601 Downstream 68bp
chr11 64081828 64081828 1 + C G rs541359948 64081827 + 64081807 64081847 41 CCCTGGCAGTCGCTGGAGGCCCCCGGAAGACAGGTGAGAGC CCCTGGCAGTCGCTGGAGGCCGCCGGAAGACAGGTGAGAGC < 41bp 0.483120888722143 0.786966704592607 0.58062994 0.827983 prediction 0.573933409185213 Functional Gain - ESRRA ENSG00000173153 CDS Human protein_coding chr11:64081827 chr11:64081828 nonsynonymous SNV 0.990 0 22 hm5C_associated_SNPs_103062 0 0 1 0 1 ESRRA chr11:64081839 5'GT 64081839 Upstream 12bp
chr18 14339562 14339562 1 + C A rs113274851 14339558 + 14339538 14339578 41 ACTGTCAGGGGCCCTGTCCTCAACCCCGGGTCTGACACTTG ACTGTCAGGGGCCCTGTCCTCAACACCGGGTCTGACACTTG < 41bp 0.41969073309787 0.786942387091614 0.220606 0.25030905 prediction 0.573884774183228 Functional Gain - CYP4F35P ENSG00000265787 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr18:14339558 chr18:14339562 . . 0 25 hm5C_associated_SNPs_103066 0 0 0 0 2 CYP4F35P chr18:14339511 3'AG 14339511 Downstream 52bp
chr18 14339562 14339562 1 + C A rs113274851 14339558 + 14339538 14339578 41 ACTGTCAGGGGCCCTGTCCTCAACCCCGGGTCTGACACTTG ACTGTCAGGGGCCCTGTCCTCAACACCGGGTCTGACACTTG < 41bp 0.41969073309787 0.786942387091614 0.220606 0.25030905 prediction 0.573884774183228 Functional Gain - CYP4F35P ENSG00000265787 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr18:14339558 chr18:14339562 . . 0 25 hm5C_associated_SNPs_103066 0 0 0 0 2 CYP4F35P chr18:14339639 5'GT 14339639 Upstream 78bp
chr10 65357838 65357838 1 + C A LIHC 65357834 + 65357814 65357854 41 TTTTGTCATATGGCTGCTTTCTCCCTATACCAAAGGAGCAA TTTTGTCATATGGCTGCTTTCTCCATATACCAAAGGAGCAA < 41bp 0.622300656244097 0.909240406868126 0.07986012 0.96094334 prediction 0.573879501248059 Functional Gain - REEP3 ENSG00000165476 CDS Human protein_coding chr10:65357834 chr10:65357838 synonymous SNV . 0 25 hm5C_associated_SNPs_103068 0 0 1 0 1 REEP3 chr10:65357784 3'AG 65357784 Downstream 55bp
chr19 19645867 19645867 1 + C A THCA 19645863 + 19645843 19645883 41 GCGTTCCCGTTGCCCGCTCTCTCCCGGAAGCAGAGGACGGT GCGTTCCCGTTGCCCGCTCTCTCCAGGAAGCAGAGGACGGT < 41bp 0.56725643649882 0.854173367611004 0.1251888 0.9186684 prediction 0.573833862224367 Functional Gain - YJEFN3 ENSG00000250067;ENSG00000258674 CDS Human other chr19:19645863 chr19:19645867 synonymous SNV . 0 25 hm5C_associated_SNPs_103070 0 0 1 0 1 YJEFN3 chr19:19645843 3'AG 19645843 Downstream 25bp
chr11 66291352 66291352 1 + C G BLCA 66291351 + 66291331 66291371 41 TGCTCAATGTCATCCACACCCCGGTGAGCCCCATCTCCGGC TGCTCAATGTCATCCACACCCGGGTGAGCCCCATCTCCGGC < 41bp 0.529157146090476 0.816067345530136 0.25540692 0.91805184 prediction 0.573820398879319 Functional Gain - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66291351 chr11:66291352 nonsynonymous SNV 0.841 1 22 hm5C_associated_SNPs_103071 0 0 1 0 1 BBS1 chr11:66291353 5'GT 66291353 Upstream 2bp
chr19 39961032 39961032 1 + C A THCA 39961028 + 39961008 39961048 41 CCCTGGCAGCTGAAGGTGCTCCCCCGGGACCTGCAGCTCTG CCCTGGCAGCTGAAGGTGCTCCCCAGGGACCTGCAGCTCTG < 41bp 0.370070487120961 0.786886055512424 0.04687354 0.2832458 prediction 0.573772111024847 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39961028 chr19:39961032 synonymous SNV . 0 25 hm5C_associated_SNPs_103073 0 0 1 0 1 SUPT5H chr19:39961017 3'AG 39961017 Downstream 16bp
chr1 79120770 79120770 1 + T A COAD 79120766 + 79120746 79120786 41 GATCCCTGGTTCAACAAATACGAATTCTGCTGCTGGGTCCA GATCCCTGGTTCAACAAATACGAAATCTGCTGCTGGGTCCA < 41bp 0.466124833513429 0.786841751731353 0.3858124 0.681335 prediction 0.573683503462706 Functional Gain - IFI44 ENSG00000137965 CDS Human protein_coding chr1:79120766 chr1:79120770 nonsynonymous SNV 0.894 4 25 hm5C_associated_SNPs_103074 0 0 0 0 1 IFI44 chr1:79120699 3'AG 79120699 Downstream 72bp
chr10 124742959 124742959 1 + C G rs377253809 124742958 + 124742938 124742978 41 AACACAACAGCCTCACAATTCCGAGTCCAGCATGTGCTTCG AACACAACAGCCTCACAATTCGGAGTCCAGCATGTGCTTCG < 41bp 0.486845696975441 0.786767175961088 0.40851188 0.8747715 prediction 0.573534351922176 Functional Gain - PSTK ENSG00000179988 CDS Human protein_coding chr10:124742958 chr10:124742959 nonsynonymous SNV 0.049 0 22 hm5C_associated_SNPs_103078 0 0 1 0 1 PSTK chr10:124742986 5'GT 124742986 Upstream 28bp
chr21 30699657 30699657 1 + T G rs140585235 30699654 + 30699634 30699674 41 GTCATTAGCTTGGGAGACGACTCTGAGACGGACACCGAAGG GTCATTAGCTTGGGAGACGACTCGGAGACGGACACCGAAGG < 41bp 0.426189127384534 0.786754629979134 0.26138276 0.26150912 prediction 0.573509259958268 Functional Gain - BACH1 ENSG00000156273 CDS Human protein_coding chr21:30699654 chr21:30699657 synonymous SNV . 0 24 hm5C_associated_SNPs_103081 0 0 1 0 1 BACH1 chr21:30699714 5'GT 30699714 Upstream 58bp
chr19 55106574 55106574 1 + T G SARC 55106572 + 55106552 55106592 41 CCTTCTCTCCTAGGAGCCTACATCAAACCCACCCTCTCAGC CCTTCTCTCCTAGGAGCCTACAGCAAACCCACCCTCTCAGC < 41bp 0.445801829855411 0.786745293800622 0.036477953 0.051753968 prediction 0.573490587601244 Functional Gain - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55106572 chr19:55106574 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_103083 0 0 0 0 1 LILRA1 chr19:55106565 3'AG 55106565 Downstream 10bp
chr11 64359154 64359154 1 + C A rs148378818 64359150 + 64359130 64359170 41 GAGCATGCTGGAGAACTTCTCGGCCGCCGTGCCCAGCCACC GAGCATGCTGGAGAACTTCTCGGCAGCCGTGCCCAGCCACC < 41bp 0.608713343711531 0.895458172008947 0.9293314 0.94248825 prediction 0.57348965659483 Functional Gain - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64359150 chr11:64359154 synonymous SNV . 0 25 hm5C_associated_SNPs_103084 0 0 0 0 1 SLC22A12 chr11:64359131 3'AG 64359131 Downstream 24bp
chr8 22412044 22412044 1 + C G rs141486783 22412043 + 22412023 22412063 41 CAGGGCCCACCCCGCAGCCTCCGCGCTGGGCTCAGCCTGGA CAGGGCCCACCCCGCAGCCTCGGCGCTGGGCTCAGCCTGGA < 41bp 0.476755471067514 0.786719058162708 0.16559494 0.89182997 prediction 0.573438116325417 Functional Gain - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22412043 chr8:22412044 nonsynonymous SNV 0.054 2 22 hm5C_associated_SNPs_103085 0 0 0 0 2 SORBS3 chr8:22411965 3'AG 22411965 Downstream 80bp
chr8 22412044 22412044 1 + C G rs141486783 22412043 + 22412023 22412063 41 CAGGGCCCACCCCGCAGCCTCCGCGCTGGGCTCAGCCTGGA CAGGGCCCACCCCGCAGCCTCGGCGCTGGGCTCAGCCTGGA < 41bp 0.476755471067514 0.786719058162708 0.16559494 0.89182997 prediction 0.573438116325417 Functional Gain - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22412043 chr8:22412044 nonsynonymous SNV 0.054 2 22 hm5C_associated_SNPs_103085 0 0 0 0 2 SORBS3 chr8:22412121 5'GT 22412121 Upstream 78bp
chr9 35801115 35801115 1 + T G LUSC 35801113 + 35801093 35801133 41 GCTCTGGGCACAGGAATCACCTTCATCATGTTTGGTGTTTC GCTCTGGGCACAGGAATCACCTGCATCATGTTTGGTGTTTC < 41bp 0.554779484642546 0.841493677096069 0.043724954 0.23305863 prediction 0.573428384907047 Functional Gain - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35801113 chr9:35801115 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_103087 0 0 0 0 2 NPR2 chr9:35801067 3'AG 35801067 Downstream 49bp
chr9 35801115 35801115 1 + T G LUSC 35801113 + 35801093 35801133 41 GCTCTGGGCACAGGAATCACCTTCATCATGTTTGGTGTTTC GCTCTGGGCACAGGAATCACCTGCATCATGTTTGGTGTTTC < 41bp 0.554779484642546 0.841493677096069 0.043724954 0.23305863 prediction 0.573428384907047 Functional Gain - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35801113 chr9:35801115 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_103087 0 0 0 0 2 NPR2 chr9:35801151 5'GT 35801151 Upstream 37bp
chrX 14627263 14627263 1 + T G LUAD 14627260 + 14627240 14627280 41 TGCAGCCCCTGCCAGGGTCGCACTGGGCATCACCACAGTCT TGCAGCCCCTGCCAGGGTCGCACGGGGCATCACCACAGTCT < 41bp 0.402475893997021 0.786673703322408 0.19521162 0.83321166 prediction 0.573347406644817 Functional Gain - GLRA2 ENSG00000101958 CDS Human protein_coding chrX:14627260 chrX:14627263 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_103090 0 0 0 0 1 GLRA2 chrX:14627327 5'GT 14627327 Upstream 65bp
chr1 202205106 202205106 1 + C G BLCA 202205102 + 202205082 202205122 41 CCGCAGAGGCGCTGTGGGAGCTGCCGAGCCTGCAGTCGCTG CCGCAGAGGCGCTGTGGGAGCTGCGGAGCCTGCAGTCGCTG < 41bp 0.509333674019301 0.795975331872721 0.38487878 0.5955696 prediction 0.57328331570684 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202205102 chr1:202205106 nonsynonymous SNV 0.980 0 25 hm5C_associated_SNPs_103092 0 0 0 0 2 LGR6 chr1:202205050 3'AG 202205050 Downstream 57bp
chr1 202205106 202205106 1 + C G BLCA 202205102 + 202205082 202205122 41 CCGCAGAGGCGCTGTGGGAGCTGCCGAGCCTGCAGTCGCTG CCGCAGAGGCGCTGTGGGAGCTGCGGAGCCTGCAGTCGCTG < 41bp 0.509333674019301 0.795975331872721 0.38487878 0.5955696 prediction 0.57328331570684 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202205102 chr1:202205106 nonsynonymous SNV 0.980 0 25 hm5C_associated_SNPs_103092 0 0 0 0 2 LGR6 chr1:202205121 5'GT 202205121 Upstream 16bp
chr1 40954798 40954798 1 + C G LUSC 40954797 + 40954777 40954817 41 GGACATATCTATTGACTTCACCCAGGAAGAGTGGGGGCAGC GGACATATCTATTGACTTCACGCAGGAAGAGTGGGGGCAGC < 41bp 0.507264092932252 0.793897279451222 0.027521014 0.077379584 prediction 0.573266373037939 Functional Gain - ZFP69 ENSG00000187815 CDS Human protein_coding chr1:40954797 chr1:40954798 synonymous SNV . 0 22 hm5C_associated_SNPs_103093 0 0 1 0 2 ZFP69 chr1:40954760 3'AG 40954760 Downstream 39bp
chr1 40954798 40954798 1 + C G LUSC 40954797 + 40954777 40954817 41 GGACATATCTATTGACTTCACCCAGGAAGAGTGGGGGCAGC GGACATATCTATTGACTTCACGCAGGAAGAGTGGGGGCAGC < 41bp 0.507264092932252 0.793897279451222 0.027521014 0.077379584 prediction 0.573266373037939 Functional Gain - ZFP69 ENSG00000187815 CDS Human protein_coding chr1:40954797 chr1:40954798 synonymous SNV . 0 22 hm5C_associated_SNPs_103093 0 0 1 0 2 ZFP69 chr1:40954886 5'GT 40954886 Upstream 89bp
chr14 76642983 76642983 1 + T G HNSC 76642980 + 76642960 76643000 41 TTTTAGGAGACCAGCATAAACACTTTGGGGACTGAGAGGAT TTTTAGGAGACCAGCATAAACACGTTGGGGACTGAGAGGAT < 41bp 0.514834810537762 0.801467152030269 0.14639103 0.26433823 prediction 0.573264682985014 Functional Gain - GPATCH2L ENSG00000089916 CDS Human protein_coding chr14:76642980 chr14:76642983 synonymous SNV . 0 24 hm5C_associated_SNPs_103094 0 0 1 0 1 GPATCH2L chr14:76642966 3'AG 76642966 Downstream 18bp
chr12 57922962 57922962 1 + C G rs200717548 57922961 + 57922941 57922981 41 AGGCAGCTGTCCCTCTGCCTCCCCGGGCCCGCCCTGGCCGT AGGCAGCTGTCCCTCTGCCTCGCCGGGCCCGCCCTGGCCGT < 41bp 0.484067186448054 0.786598602447457 0.17200667 0.19895726 prediction 0.573197204894915 Functional Gain - MBD6 ENSG00000166987 CDS Human protein_coding chr12:57922961 chr12:57922962 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_103100 0 0 1 0 1 MBD6 chr12:57922943 3'AG 57922943 Downstream 20bp
chr11 61249829 61249829 1 + C A LUAD 61249825 + 61249805 61249845 41 TGTGGGCAGTCACGTAGGCACCGGCTACAAATCAAATTTCC TGTGGGCAGTCACGTAGGCACCGGATACAAATCAAATTTCC < 41bp 0.392194551984264 0.786589875879241 0.1527729 0.27323747 prediction 0.573179751758483 Functional Gain - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61249825 chr11:61249829 synonymous SNV . 0 25 hm5C_associated_SNPs_103102 0 0 0 0 2 PPP1R32 chr11:61249783 3'AG 61249783 Downstream 47bp
chr11 61249829 61249829 1 + C A LUAD 61249825 + 61249805 61249845 41 TGTGGGCAGTCACGTAGGCACCGGCTACAAATCAAATTTCC TGTGGGCAGTCACGTAGGCACCGGATACAAATCAAATTTCC < 41bp 0.392194551984264 0.786589875879241 0.1527729 0.27323747 prediction 0.573179751758483 Functional Gain - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61249825 chr11:61249829 synonymous SNV . 0 25 hm5C_associated_SNPs_103102 0 0 0 0 2 PPP1R32 chr11:61249900 5'GT 61249900 Upstream 72bp
chr16 88052199 88052199 1 + C A UCEC 88052195 + 88052175 88052215 41 ACCTCTTCCACCGCGAGGTGCAGGCTGTGTCCAACCTCTCG ACCTCTTCCACCGCGAGGTGCAGGATGTGTCCAACCTCTCG < 41bp 0.39516081619894 0.786566241349444 0.6431589 0.9050524 prediction 0.573132482698888 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88052195 chr16:88052199 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_103103 0 0 0 0 1 BANP chr16:88052273 5'GT 88052273 Upstream 75bp
chr11 60231776 60231776 1 + T A UCEC 60231772 + 60231752 60231792 41 TTTTTACAGTATATTATTTCCGGATCACTCCTGGCAGCAAC TTTTTACAGTATATTATTTCCGGAACACTCCTGGCAGCAAC < 41bp 0.498947652163905 0.786533884556942 0.25436646 0.16829738 prediction 0.573067769113884 Functional Gain - MS4A1 ENSG00000156738 CDS Human protein_coding chr11:60231772 chr11:60231776 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_103106 0 0 0 0 1 MS4A1 chr11:60231761 3'AG 60231761 Downstream 16bp
chr19 50906794 50906794 1 + C G HNSC 50906793 + 50906773 50906813 41 CATGGACCCCGACGTGATCACCGGTTACAACATCCAGAACT CATGGACCCCGACGTGATCACGGGTTACAACATCCAGAACT < 41bp 0.474636465269769 0.786522738695852 0.13650084 0.67324615 prediction 0.573045477391704 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906793 chr19:50906794 synonymous SNV . 0 22 hm5C_associated_SNPs_103108 0 0 1 0 2 POLD1 chr19:50906750 3'AG 50906750 Downstream 45bp
chr19 50906794 50906794 1 + C G HNSC 50906793 + 50906773 50906813 41 CATGGACCCCGACGTGATCACCGGTTACAACATCCAGAACT CATGGACCCCGACGTGATCACGGGTTACAACATCCAGAACT < 41bp 0.474636465269769 0.786522738695852 0.13650084 0.67324615 prediction 0.573045477391704 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906793 chr19:50906794 synonymous SNV . 0 22 hm5C_associated_SNPs_103108 0 0 1 0 2 POLD1 chr19:50906854 5'GT 50906854 Upstream 61bp
chr19 8121327 8121327 1 + T A LUAD 8121323 + 8121303 8121343 41 AGGTGCAGAGAGCCATGAAGCTCCTGGATGCTCGAAATAAG AGGTGCAGAGAGCCATGAAGCTCCAGGATGCTCGAAATAAG < 41bp 0.554832273888238 0.841337871671885 0.08585429 0.4081843 prediction 0.573011195567294 Functional Gain - CCL25 ENSG00000131142 CDS Human protein_coding chr19:8121323 chr19:8121327 nonsynonymous SNV 0.024 3 25 hm5C_associated_SNPs_103109 0 0 0 0 2 CCL25 chr19:8121250 3'AG 8121250 Downstream 78bp
chr19 8121327 8121327 1 + T A LUAD 8121323 + 8121303 8121343 41 AGGTGCAGAGAGCCATGAAGCTCCTGGATGCTCGAAATAAG AGGTGCAGAGAGCCATGAAGCTCCAGGATGCTCGAAATAAG < 41bp 0.554832273888238 0.841337871671885 0.08585429 0.4081843 prediction 0.573011195567294 Functional Gain - CCL25 ENSG00000131142 CDS Human protein_coding chr19:8121323 chr19:8121327 nonsynonymous SNV 0.024 3 25 hm5C_associated_SNPs_103109 0 0 0 0 2 CCL25 chr19:8121383 5'GT 8121383 Upstream 57bp
chr1 162769725 162769725 1 + C A COAD 162769721 + 162769701 162769741 41 GCTTTGAACAGGAACTTCAACCAGCAGGTAAGGCCTGTCTC GCTTTGAACAGGAACTTCAACCAGAAGGTAAGGCCTGTCTC < 41bp 0.392482070677146 0.78648315921903 0.2611969 0.30638403 prediction 0.572966318438059 Functional Gain - HSD17B7 ENSG00000132196 CDS Human protein_coding chr1:162769721 chr1:162769725 nonsynonymous SNV 0.329 0 25 hm5C_associated_SNPs_103111 0 0 1 2 1 HSD17B7 chr1:162769727 5'GT 162769727 Upstream 3bp
chr6 35745315 35745315 1 + T G UVM 35745313 + 35745293 35745333 41 GACTTGGACTCCGGTGGAGCCTTCTGTGCCCCCAGGGCCAG GACTTGGACTCCGGTGGAGCCTGCTGTGCCCCCAGGGCCAG < 41bp 0.571035764690372 0.857501599771656 0.0077856183 0.04766339 prediction 0.572931670162568 Functional Gain - CLPSL2 ENSG00000196748 CDS Human protein_coding chr6:35745313 chr6:35745315 nonsynonymous SNV 0.837 3 23 hm5C_associated_SNPs_103113 0 0 0 0 2 CLPSL2 chr6:35745236 3'AG 35745236 Downstream 80bp
chr6 35745315 35745315 1 + T G UVM 35745313 + 35745293 35745333 41 GACTTGGACTCCGGTGGAGCCTTCTGTGCCCCCAGGGCCAG GACTTGGACTCCGGTGGAGCCTGCTGTGCCCCCAGGGCCAG < 41bp 0.571035764690372 0.857501599771656 0.0077856183 0.04766339 prediction 0.572931670162568 Functional Gain - CLPSL2 ENSG00000196748 CDS Human protein_coding chr6:35745313 chr6:35745315 nonsynonymous SNV 0.837 3 23 hm5C_associated_SNPs_103113 0 0 0 0 2 CLPSL2 chr6:35745358 5'GT 35745358 Upstream 44bp
chrX 47044935 47044935 1 + C A COAD 47044931 + 47044911 47044951 41 GCCCTGAGCGGGAGGAGAAGCTCACCGACTGGCAGAAGCTG GCCCTGAGCGGGAGGAGAAGCTCAACGACTGGCAGAAGCTG < 41bp 0.36848795775175 0.786458408191793 0.21608952 0.6258395 prediction 0.572916816383585 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47044931 chrX:47044935 nonsynonymous SNV 0.940 4 25 hm5C_associated_SNPs_103117 0 0 1 0 2 RBM10 chrX:47044841 3'AG 47044841 Downstream 95bp
chrX 47044935 47044935 1 + C A COAD 47044931 + 47044911 47044951 41 GCCCTGAGCGGGAGGAGAAGCTCACCGACTGGCAGAAGCTG GCCCTGAGCGGGAGGAGAAGCTCAACGACTGGCAGAAGCTG < 41bp 0.36848795775175 0.786458408191793 0.21608952 0.6258395 prediction 0.572916816383585 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47044931 chrX:47044935 nonsynonymous SNV 0.940 4 25 hm5C_associated_SNPs_103117 0 0 1 0 2 RBM10 chrX:47045029 5'GT 47045029 Upstream 95bp
chr1 202273743 202273743 1 + C A UCEC 202273739 + 202273719 202273759 41 CATCGGGGATGTGCCAACAGCTGCCCAGGCTCCGAGTCCTG CATCGGGGATGTGCCAACAGCTGCACAGGCTCCGAGTCCTG < 41bp 0.359614884584279 0.786456606108807 0.1114831 0.39033344 prediction 0.572913212217614 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202273739 chr1:202273743 nonsynonymous SNV 0.944 4 25 hm5C_associated_SNPs_103119 0 0 0 0 2 LGR6 chr1:202273687 3'AG 202273687 Downstream 57bp
chr1 202273743 202273743 1 + C A UCEC 202273739 + 202273719 202273759 41 CATCGGGGATGTGCCAACAGCTGCCCAGGCTCCGAGTCCTG CATCGGGGATGTGCCAACAGCTGCACAGGCTCCGAGTCCTG < 41bp 0.359614884584279 0.786456606108807 0.1114831 0.39033344 prediction 0.572913212217614 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202273739 chr1:202273743 nonsynonymous SNV 0.944 4 25 hm5C_associated_SNPs_103119 0 0 0 0 2 LGR6 chr1:202273758 5'GT 202273758 Upstream 16bp
chr1 155108444 155108444 1 + C G HNSC 155108443 + 155108423 155108463 41 CGGAGCATGCGTGGTCTTCACCCTTGGCATGTTCTCCGCCG CGGAGCATGCGTGGTCTTCACGCTTGGCATGTTCTCCGCCG < 41bp 0.506151904438206 0.792582837471231 0.110729754 0.18220916 prediction 0.572861866066049 Functional Gain - SLC50A1 ENSG00000169241 CDS Human protein_coding chr1:155108443 chr1:155108444 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_103124 0 0 1 0 1 SLC50A1 chr1:155108467 5'GT 155108467 Upstream 24bp
chr8 101225559 101225559 1 + C G rs2514681 101225558 + 101225538 101225578 41 GCAGGGCGCGGAGAACCCTGCCGGCCTGAAGAGCCAGGGCA GCAGGGCGCGGAGAACCCTGCGGGCCTGAAGAGCCAGGGCA < 41bp 0.525500535983129 0.811929995957418 0.41809428 0.8852401 prediction 0.572858919948577 Functional Gain - SPAG1 ENSG00000104450 CDS Human protein_coding chr8:101225558 chr8:101225559 synonymous SNV . 0 22 hm5C_associated_SNPs_103125 1 0 0 0 1 SPAG1 chr8:101225656 5'GT 101225656 Upstream 98bp
chr14 19553843 19553843 1 + C A rs575705167 19553839 + 19553819 19553859 41 GTCCGTCGAGAAGATCTGGACAAGCTCCACAGAGCTGCCTG GTCCGTCGAGAAGATCTGGACAAGATCCACAGAGCTGCCTG < 41bp 0.605321865228594 0.891744364011477 0.115801275 0.1928874 prediction 0.572844997565765 Functional Gain - POTEG ENSG00000222036 CDS Human protein_coding chr14:19553839 chr14:19553843 nonsynonymous SNV 0.663 2 25 hm5C_associated_SNPs_103127 0 0 0 0 1 POTEG chr14:19553937 5'GT 19553937 Upstream 95bp
chr4 944240 944240 1 + C A LIHC 944236 + 944216 944256 41 ACAGAAGTGTACAGAGGCTTCTGGCAACACGGATTGCCGTC ACAGAAGTGTACAGAGGCTTCTGGAAACACGGATTGCCGTC < 41bp 0.529269610342756 0.815685936340948 0.26433498 0.32381284 prediction 0.572832651996384 Functional Gain - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:944236 chr4:944240 nonsynonymous SNV 0.471 1 25 hm5C_associated_SNPs_103128 0 0 0 0 2 TMEM175 chr4:944209 3'AG 944209 Downstream 32bp
chr4 944240 944240 1 + C A LIHC 944236 + 944216 944256 41 ACAGAAGTGTACAGAGGCTTCTGGCAACACGGATTGCCGTC ACAGAAGTGTACAGAGGCTTCTGGAAACACGGATTGCCGTC < 41bp 0.529269610342756 0.815685936340948 0.26433498 0.32381284 prediction 0.572832651996384 Functional Gain - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:944236 chr4:944240 nonsynonymous SNV 0.471 1 25 hm5C_associated_SNPs_103128 0 0 0 0 2 TMEM175 chr4:944306 5'GT 944306 Upstream 67bp
chr15 78805477 78805477 1 + C A UCEC 78805473 + 78805453 78805493 41 AGTCAGAGGCTCTTAGCAAACCCACTTTCAGTGAGGAACAA AGTCAGAGGCTCTTAGCAAACCCAATTTCAGTGAGGAACAA < 41bp 0.382311972253938 0.78638951418264 0.10233337 0.14813307 prediction 0.572779028365281 Functional Gain - HYKK ENSG00000188266 CDS Human protein_coding chr15:78805473 chr15:78805477 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_103129 0 0 0 0 1 HYKK chr15:78805426 3'AG 78805426 Downstream 52bp
chr21 34144506 34144506 1 + C G rs188054918 34144505 + 34144485 34144525 41 GCGGTAATGTGAGGAAGCCTCCCGCCAAACAGATGAGGGAG GCGGTAATGTGAGGAAGCCTCGCGCCAAACAGATGAGGGAG < 41bp 0.490340298993398 0.786308242964555 0.5535244 0.71137524 prediction 0.57261648592911 Functional Gain - C21orf62-AS1 ENSG00000205930 UTR5 Human antisense chr21:34144505 chr21:34144506 . . 0 22 hm5C_associated_SNPs_103134 0 0 0 0 1 C21orf62-AS1 chr21:34144583 5'GT 34144583 Upstream 78bp
chr1 13933738 13933738 1 + C G SKCM 13933737 + 13933717 13933757 41 CGGCGTTGCCATGCCAGGTGCCGAAGATGATGTGGTGACTC CGGCGTTGCCATGCCAGGTGCGGAAGATGATGTGGTGACTC < 41bp 0.512358817221006 0.798659173972507 0.5327939 0.89420867 prediction 0.572600713503002 Functional Gain - PDPN ENSG00000162493 CDS Human protein_coding chr1:13933737 chr1:13933738 synonymous SNV . 0 22 hm5C_associated_SNPs_103136 0 0 0 0 2 PDPN chr1:13933668 3'AG 13933668 Downstream 71bp
chr1 13933738 13933738 1 + C G SKCM 13933737 + 13933717 13933757 41 CGGCGTTGCCATGCCAGGTGCCGAAGATGATGTGGTGACTC CGGCGTTGCCATGCCAGGTGCGGAAGATGATGTGGTGACTC < 41bp 0.512358817221006 0.798659173972507 0.5327939 0.89420867 prediction 0.572600713503002 Functional Gain - PDPN ENSG00000162493 CDS Human protein_coding chr1:13933737 chr1:13933738 synonymous SNV . 0 22 hm5C_associated_SNPs_103136 0 0 0 0 2 PDPN chr1:13933801 5'GT 13933801 Upstream 64bp
chr12 57883288 57883288 1 + C G SARC 57883287 + 57883267 57883307 41 CTTGGTTCAGTGCGGAGAGCCCTGACTCACATTGACCACAG CTTGGTTCAGTGCGGAGAGCCGTGACTCACATTGACCACAG < 41bp 0.491340302431952 0.78626371425217 0.11784732 0.30003646 prediction 0.57252742850434 Functional Gain - MARS ENSG00000166986 CDS Human protein_coding chr12:57883287 chr12:57883288 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_103138 0 0 1 0 2 MARS chr12:57883207 3'AG 57883207 Downstream 82bp
chr12 57883288 57883288 1 + C G SARC 57883287 + 57883267 57883307 41 CTTGGTTCAGTGCGGAGAGCCCTGACTCACATTGACCACAG CTTGGTTCAGTGCGGAGAGCCGTGACTCACATTGACCACAG < 41bp 0.491340302431952 0.78626371425217 0.11784732 0.30003646 prediction 0.57252742850434 Functional Gain - MARS ENSG00000166986 CDS Human protein_coding chr12:57883287 chr12:57883288 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_103138 0 0 1 0 2 MARS chr12:57883341 5'GT 57883341 Upstream 54bp
chr18 61232795 61232795 1 + T A MESO 61232791 + 61232771 61232811 41 TACACCAAGGGGAAGCTCAGCATGTTCGTGCTGCTGCCATC TACACCAAGGGGAAGCTCAGCATGATCGTGCTGCTGCCATC < 41bp 0.488331353906273 0.786260970224035 0.32435906 0.13672194 prediction 0.572521940448069 Functional Gain - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61232791 chr18:61232795 nonsynonymous SNV 0.724 1 25 hm5C_associated_SNPs_103141 0 0 0 0 1 SERPINB12 chr18:61232845 5'GT 61232845 Upstream 51bp
chr10 88418390 88418390 1 + C A UCEC 88418386 + 88418366 88418406 41 AAGAGGCGTGCGGCATTTGTCCTGCTGGGCGTTTGGCTCTA AAGAGGCGTGCGGCATTTGTCCTGATGGGCGTTTGGCTCTA < 41bp 0.385842609202492 0.78625133476027 0.8360439 0.79402125 prediction 0.57250266952054 Functional Gain - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88418386 chr10:88418390 nonsynonymous SNV 0.980 0 25 hm5C_associated_SNPs_103143 0 0 0 0 1 OPN4 chr10:88418444 5'GT 88418444 Upstream 55bp
chr17 40925538 40925538 1 + C A UCEC 40925534 + 40925514 40925554 41 GCCGTGGCAGTATCGCTTCCCACCCTTCTTTACGTGAGGCT GCCGTGGCAGTATCGCTTCCCACCATTCTTTACGTGAGGCT < 41bp 0.395013553439526 0.786212743605469 0.0044662654 0.011352241 prediction 0.572425487210937 Functional Gain - VPS25 ENSG00000131475 CDS Human protein_coding chr17:40925534 chr17:40925538 synonymous SNV . 0 25 hm5C_associated_SNPs_103146 0 0 1 0 1 VPS25 chr17:40925546 5'GT 40925546 Upstream 9bp
chr7 142829219 142829219 1 + C A UCEC 142829215 + 142829195 142829235 41 TCTGTTTTCTCCAGCATGCGCTTGCTCCAGCTCCTGTTCAG TCTGTTTTCTCCAGCATGCGCTTGATCCAGCTCCTGTTCAG < 41bp 0.422496612689405 0.786127432405565 0.10086876 0.18591169 prediction 0.57225486481113 Functional Gain - PIP ENSG00000159763 CDS Human protein_coding chr7:142829215 chr7:142829219 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_103150 0 0 0 0 1 PIP chr7:142829304 5'GT 142829304 Upstream 86bp
chr7 23163426 23163426 1 + C G HNSC 23163425 + 23163405 23163445 41 TGTGACGTGATCCTCATGGTCCAGGAAAGAAAGATACCTGC TGTGACGTGATCCTCATGGTCGAGGAAAGAAAGATACCTGC < 41bp 0.502208454427606 0.788278086828404 0.17920545 0.8936746 prediction 0.572139264801596 Functional Gain - KLHL7 ENSG00000122550 CDS Human protein_coding chr7:23163425 chr7:23163426 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_103151 0 0 1 0 2 KLHL7 chr7:23163396 3'AG 23163396 Downstream 31bp
chr7 23163426 23163426 1 + C G HNSC 23163425 + 23163405 23163445 41 TGTGACGTGATCCTCATGGTCCAGGAAAGAAAGATACCTGC TGTGACGTGATCCTCATGGTCGAGGAAAGAAAGATACCTGC < 41bp 0.502208454427606 0.788278086828404 0.17920545 0.8936746 prediction 0.572139264801596 Functional Gain - KLHL7 ENSG00000122550 CDS Human protein_coding chr7:23163425 chr7:23163426 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_103151 0 0 1 0 2 KLHL7 chr7:23163498 5'GT 23163498 Upstream 73bp
chr12 48359119 48359119 1 + C A UCEC 48359115 + 48359095 48359135 41 CACACAGTGATCAGAGATTGCGCCCTCAGCGAACGTGAGTT CACACAGTGATCAGAGATTGCGCCATCAGCGAACGTGAGTT < 41bp 0.36487381312323 0.786031006450645 0.2453317 0.36934215 prediction 0.57206201290129 Functional Gain - TMEM106C ENSG00000134291 CDS Human protein_coding chr12:48359115 chr12:48359119 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_103156 0 0 1 0 2 TMEM106C chr12:48359065 3'AG 48359065 Downstream 55bp
chr12 48359119 48359119 1 + C A UCEC 48359115 + 48359095 48359135 41 CACACAGTGATCAGAGATTGCGCCCTCAGCGAACGTGAGTT CACACAGTGATCAGAGATTGCGCCATCAGCGAACGTGAGTT < 41bp 0.36487381312323 0.786031006450645 0.2453317 0.36934215 prediction 0.57206201290129 Functional Gain - TMEM106C ENSG00000134291 CDS Human protein_coding chr12:48359115 chr12:48359119 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_103156 0 0 1 0 2 TMEM106C chr12:48359128 5'GT 48359128 Upstream 10bp
chr17 7919550 7919550 1 + C A ESCA 7919546 + 7919526 7919566 41 AAGGGCGCCGAGGACACTTTCTGGCTAGTGGGCAGACGCGG AAGGGCGCCGAGGACACTTTCTGGATAGTGGGCAGACGCGG < 41bp 0.621798317328734 0.90767994034921 0.4440392 0.6190403 prediction 0.571763246040952 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7919546 chr17:7919550 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_103169 0 0 0 0 2 GUCY2D chr17:7919523 3'AG 7919523 Downstream 28bp
chr17 7919550 7919550 1 + C A ESCA 7919546 + 7919526 7919566 41 AAGGGCGCCGAGGACACTTTCTGGCTAGTGGGCAGACGCGG AAGGGCGCCGAGGACACTTTCTGGATAGTGGGCAGACGCGG < 41bp 0.621798317328734 0.90767994034921 0.4440392 0.6190403 prediction 0.571763246040952 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7919546 chr17:7919550 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_103169 0 0 0 0 2 GUCY2D chr17:7919608 5'GT 7919608 Upstream 59bp
chr1 47610318 47610318 1 + T A COAD 47610314 + 47610294 47610334 41 GACACCACAGCCAGTGGGATCTCCTGGATCCTCTATGCTCT GACACCACAGCCAGTGGGATCTCCAGGATCCTCTATGCTCT < 41bp 0.450805621866233 0.785881117328395 0.03389576 0.9536452 prediction 0.571762234656791 Functional Gain - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47610314 chr1:47610318 nonsynonymous SNV 0.129 3 25 hm5C_associated_SNPs_103170 0 0 0 0 2 CYP4A22 chr1:47610222 3'AG 47610222 Downstream 97bp
chr1 47610318 47610318 1 + T A COAD 47610314 + 47610294 47610334 41 GACACCACAGCCAGTGGGATCTCCTGGATCCTCTATGCTCT GACACCACAGCCAGTGGGATCTCCAGGATCCTCTATGCTCT < 41bp 0.450805621866233 0.785881117328395 0.03389576 0.9536452 prediction 0.571762234656791 Functional Gain - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47610314 chr1:47610318 nonsynonymous SNV 0.129 3 25 hm5C_associated_SNPs_103170 0 0 0 0 2 CYP4A22 chr1:47610412 5'GT 47610412 Upstream 95bp
chr20 57876486 57876486 1 + C G BLCA 57876482 + 57876462 57876502 41 CAGGATTCGTGCCTTGCTCCCAGTCTGGGGATGCTGGCAGG CAGGATTCGTGCCTTGCTCCCAGTGTGGGGATGCTGGCAGG < 41bp 0.500572880462753 0.786437601511924 0.5688775 0.7676481 prediction 0.571729442098341 Functional Gain - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57876482 chr20:57876486 nonsynonymous SNV 0.903 2 25 hm5C_associated_SNPs_103172 0 0 0 0 1 EDN3 chr20:57876465 3'AG 57876465 Downstream 22bp
chr11 709566 709566 1 + C G BLCA 709565 + 709545 709585 41 CCCTGCAGTGGCAGCCTGGGCCGGTCCGACGGTGTGGCCAA CCCTGCAGTGGCAGCCTGGGCGGGTCCGACGGTGTGGCCAA < 41bp 0.49697599802364 0.785789809910624 0.12475374 0.7270545 prediction 0.571579619821248 Functional Gain - EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:709565 chr11:709566 nonsynonymous SNV 0.987 2 22 hm5C_associated_SNPs_103176 0 0 1 0 2 EPS8L2 chr11:709553 3'AG 709553 Downstream 14bp
chr11 709566 709566 1 + C G BLCA 709565 + 709545 709585 41 CCCTGCAGTGGCAGCCTGGGCCGGTCCGACGGTGTGGCCAA CCCTGCAGTGGCAGCCTGGGCGGGTCCGACGGTGTGGCCAA < 41bp 0.49697599802364 0.785789809910624 0.12475374 0.7270545 prediction 0.571579619821248 Functional Gain - EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:709565 chr11:709566 nonsynonymous SNV 0.987 2 22 hm5C_associated_SNPs_103176 0 0 1 0 2 EPS8L2 chr11:709608 5'GT 709608 Upstream 43bp
chr16 20439186 20439186 1 + C A ESCA 20439182 + 20439162 20439202 41 GGCTGCTTGTGCAGGAGGATCTGACCAGGTACAGCCCGTCT GGCTGCTTGTGCAGGAGGATCTGAACAGGTACAGCCCGTCT < 41bp 0.374177509717557 0.785772234044451 0.32683092 0.38882446 prediction 0.571544468088902 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20439182 chr16:20439186 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_103177 0 0 0 0 2 ACSM5 chr16:20439110 3'AG 20439110 Downstream 77bp
chr16 20439186 20439186 1 + C A ESCA 20439182 + 20439162 20439202 41 GGCTGCTTGTGCAGGAGGATCTGACCAGGTACAGCCCGTCT GGCTGCTTGTGCAGGAGGATCTGAACAGGTACAGCCCGTCT < 41bp 0.374177509717557 0.785772234044451 0.32683092 0.38882446 prediction 0.571544468088902 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20439182 chr16:20439186 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_103177 0 0 0 0 2 ACSM5 chr16:20439189 5'GT 20439189 Upstream 4bp
chr17 32954025 32954025 1 + C A LUAD 32954021 + 32954001 32954041 41 TGCTCAGCATCCTCCTCTATCTGGCCCCCAACTCCTCCTCG TGCTCAGCATCCTCCTCTATCTGGACCCCAACTCCTCCTCG < 41bp 0.623186962327002 0.908949460307027 0.91200167 0.91674685 prediction 0.57152499596005 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32954021 chr17:32954025 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_103178 0 0 0 0 1 TMEM132E chr17:32954076 5'GT 32954076 Upstream 52bp
chr14 69925177 69925177 1 + C A UCEC 69925173 + 69925153 69925193 41 ATGTTGCCACAGTACATGTCCTCCCTGAGGTGGGCGGAATA ATGTTGCCACAGTACATGTCCTCCATGAGGTGGGCGGAATA < 41bp 0.376648728461496 0.785730329480046 0.11261785 0.9236097 prediction 0.571460658960092 Functional Gain - SLC39A9 ENSG00000029364 CDS Human protein_coding chr14:69925173 chr14:69925177 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103184 0 0 1 0 1 SLC39A9 chr14:69925080 3'AG 69925080 Downstream 98bp
chr19 57157140 57157140 1 + C G rs61749984 57157139 + 57157119 57157159 41 CTGGGAGAAGCCTCCTCATCCCGCCTGCACCAAAGACTGGG CTGGGAGAAGCCTCCTCATCCGGCCTGCACCAAAGACTGGG < 41bp 0.515419454256922 0.801132507812844 0.18279433 0.5107283 prediction 0.571426107111844 Functional Gain - SMIM17 ENSG00000268182 CDS Human protein_coding chr19:57157139 chr19:57157140 synonymous SNV . 0 22 hm5C_associated_SNPs_103189 0 0 0 1 1 SMIM17 chr19:57157204 5'GT 57157204 Upstream 65bp
chr17 7577569 7577569 1 - A T HNSC 7577573 - 7577553 7577593 41 ACCACCATCCACTACAACTACATGTGTAACAGTTCCTGCAT ACCACCATCCACTACAACTACATGAGTAACAGTTCCTGCAT < 41bp 0.502805844193788 0.78851057995453 0.27352014 0.32132304 prediction 0.571409471521483 Functional Gain - TP53 ENSG00000141510 CDS Human protein_coding chr17:7577573 chr17:7577569 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_103191 0 0 1 0 1 TP53 chr17:7577608 3'AG 7577608 Downstream 40bp
chr20 48491289 48491289 1 + C A PCPG 48491285 + 48491265 48491305 41 GGCATCGTGATGTCCCACTACACGCACCATAACCTCTCCCC GGCATCGTGATGTCCCACTACACGAACCATAACCTCTCCCC < 41bp 0.366976407308711 0.785643855658757 0.11361948 0.20882997 prediction 0.571287711317514 Functional Gain - SLC9A8 ENSG00000197818 CDS Human protein_coding chr20:48491285 chr20:48491289 nonsynonymous SNV 0.986 4 25 hm5C_associated_SNPs_103196 0 0 1 0 2 SLC9A8 chr20:48491242 3'AG 48491242 Downstream 48bp
chr20 48491289 48491289 1 + C A PCPG 48491285 + 48491265 48491305 41 GGCATCGTGATGTCCCACTACACGCACCATAACCTCTCCCC GGCATCGTGATGTCCCACTACACGAACCATAACCTCTCCCC < 41bp 0.366976407308711 0.785643855658757 0.11361948 0.20882997 prediction 0.571287711317514 Functional Gain - SLC9A8 ENSG00000197818 CDS Human protein_coding chr20:48491285 chr20:48491289 nonsynonymous SNV 0.986 4 25 hm5C_associated_SNPs_103196 0 0 1 0 2 SLC9A8 chr20:48491358 5'GT 48491358 Upstream 70bp
chr1 161127927 161127927 1 + C G OV 161127926 + 161127906 161127946 41 CATAGGGGTGGCAAAATATGCCTGACGGATCATTTCAAACC CATAGGGGTGGCAAAATATGCGTGACGGATCATTTCAAACC < 41bp 0.524516294663035 0.81015353762365 0.080147505 0.1968256 prediction 0.57127448592123 Functional Gain - UFC1 ENSG00000143222 CDS Human protein_coding chr1:161127926 chr1:161127927 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_103197 0 0 1 0 2 UFC1 chr1:161127911 3'AG 161127911 Downstream 17bp
chr1 161127927 161127927 1 + C G OV 161127926 + 161127906 161127946 41 CATAGGGGTGGCAAAATATGCCTGACGGATCATTTCAAACC CATAGGGGTGGCAAAATATGCGTGACGGATCATTTCAAACC < 41bp 0.524516294663035 0.81015353762365 0.080147505 0.1968256 prediction 0.57127448592123 Functional Gain - UFC1 ENSG00000143222 CDS Human protein_coding chr1:161127926 chr1:161127927 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_103197 0 0 1 0 2 UFC1 chr1:161128001 5'GT 161128001 Upstream 75bp
chr1 111434082 111434082 1 + T A UCEC 111434078 + 111434058 111434098 41 AAGTATGTCCTGTTTTTCTTCAACTTGCTCTTTTGGGTAAG AAGTATGTCCTGTTTTTCTTCAACATGCTCTTTTGGGTAAG < 41bp 0.475705108193197 0.785619339473671 0.16312861 0.068525195 prediction 0.571238678947342 Functional Gain - CD53 ENSG00000143119 CDS Human protein_coding chr1:111434078 chr1:111434082 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_103199 0 0 1 0 2 CD53 chr1:111434014 3'AG 111434014 Downstream 69bp
chr1 111434082 111434082 1 + T A UCEC 111434078 + 111434058 111434098 41 AAGTATGTCCTGTTTTTCTTCAACTTGCTCTTTTGGGTAAG AAGTATGTCCTGTTTTTCTTCAACATGCTCTTTTGGGTAAG < 41bp 0.475705108193197 0.785619339473671 0.16312861 0.068525195 prediction 0.571238678947342 Functional Gain - CD53 ENSG00000143119 CDS Human protein_coding chr1:111434078 chr1:111434082 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_103199 0 0 1 0 2 CD53 chr1:111434093 5'GT 111434093 Upstream 12bp
chr1 156255759 156255759 1 + T A LIHC 156255755 + 156255735 156255775 41 CTGCGCTGCGGGGTCTTTGCCACCTTCCCCATTGTGCTGGG CTGCGCTGCGGGGTCTTTGCCACCATCCCCATTGTGCTGGG < 41bp 0.556617183742048 0.842183515261216 0.30809736 0.15123639 prediction 0.571132663038335 Functional Gain - TMEM79 ENSG00000163472 CDS Human protein_coding chr1:156255755 chr1:156255759 nonsynonymous SNV 0.992 1 25 hm5C_associated_SNPs_103202 0 0 0 0 1 TMEM79 chr1:156255774 5'GT 156255774 Upstream 16bp
chr3 108572553 108572553 1 + T A UCEC 108572549 + 108572529 108572569 41 AAAGCCCAGGAAACAGAATACTCATTTCTCAGACAAGGATG AAAGCCCAGGAAACAGAATACTCAATTCTCAGACAAGGATG < 41bp 0.528547098347955 0.814105498777853 0.1826258 0.30875027 prediction 0.571116800859795 Functional Gain - TRAT1 ENSG00000163519 CDS Human protein_coding chr3:108572549 chr3:108572553 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_103204 0 0 0 0 1 TRAT1 chr3:108572467 3'AG 108572467 Downstream 87bp
chr1 202991994 202991994 1 + T G CESC 202991991 + 202991971 202992011 41 TTTCCATTTCAGTTTACTATCAATGTGAGCACGGACATGCG TTTCCATTTCAGTTTACTATCAAGGTGAGCACGGACATGCG < 41bp 0.409556296431346 0.785533611287051 0.18052411 0.92251873 prediction 0.571067222574103 Functional Gain - TMEM183A;TMEM183B ENSG00000163444 CDS Human protein_coding chr1:202991991 chr1:202991994 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_103205 0 0 1 2 1 TMEM183A;TMEM183B chr1:202991983 3'AG 202991983 Downstream 12bp
chr10 129845728 129845728 1 + C A UCEC 129845724 + 129845704 129845744 41 CCGCTGCTGCTCCTCCTCCTCGTGCTCCTTCTCGCCGCCTA CCGCTGCTGCTCCTCCTCCTCGTGATCCTTCTCGCCGCCTA < 41bp 0.613900194992383 0.899431925179864 0.19452775 0.4274421 prediction 0.57106346037496 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129845724 chr10:129845728 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_103206 0 0 0 0 2 PTPRE chr10:129845654 3'AG 129845654 Downstream 75bp
chr10 129845728 129845728 1 + C A UCEC 129845724 + 129845704 129845744 41 CCGCTGCTGCTCCTCCTCCTCGTGCTCCTTCTCGCCGCCTA CCGCTGCTGCTCCTCCTCCTCGTGATCCTTCTCGCCGCCTA < 41bp 0.613900194992383 0.899431925179864 0.19452775 0.4274421 prediction 0.57106346037496 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129845724 chr10:129845728 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_103206 0 0 0 0 2 PTPRE chr10:129845753 5'GT 129845753 Upstream 26bp
chr3 118905609 118905609 1 + T A SARC 118905605 + 118905585 118905625 41 GAAGATGGCCAAAGACAACTCAACTGTTCGTTGCTTCCAGG GAAGATGGCCAAAGACAACTCAACAGTTCGTTGCTTCCAGG < 41bp 0.484008979344722 0.785476262835123 0.12671196 0.16440904 prediction 0.570952525670247 Functional Gain - UPK1B ENSG00000114638 CDS Human protein_coding chr3:118905605 chr3:118905609 synonymous SNV . 0 25 hm5C_associated_SNPs_103207 0 0 0 0 1 UPK1B chr3:118905657 5'GT 118905657 Upstream 49bp
chr5 35873713 35873713 1 + T A LUAD 35873709 + 35873689 35873729 41 CTTCTGGAGTGAATGGAGTCCAAGTTATTACTTCAGAACTC CTTCTGGAGTGAATGGAGTCCAAGATATTACTTCAGAACTC < 41bp 0.512875833677331 0.79832845613846 0.1848943 0.29839158 prediction 0.570905244922258 Functional Gain - IL7R ENSG00000168685 CDS Human protein_coding chr5:35873709 chr5:35873713 nonsynonymous SNV 0.468 3 25 hm5C_associated_SNPs_103208 0 0 0 0 1 IL7R chr5:35873750 5'GT 35873750 Upstream 38bp
chr1 19952903 19952903 1 + T A rs72959490 19952899 + 19952879 19952919 41 AGGAGCAGGAGCAGTGACTTCACCTGAGAACATCCCAGCGG AGGAGCAGGAGCAGTGACTTCACCAGAGAACATCCCAGCGG < 41bp 0.529243706293035 0.814692041807868 0.307244 0.446818 prediction 0.570896671029665 Functional Gain - MINOS1 ENSG00000270136;ENSG00000173436;ENSG00000270136 UTR5;UTR3 Human other chr1:19952899 chr1:19952903 . . 0 25 hm5C_associated_SNPs_103209 0 0 1 4 1 MINOS1 chr1:19952881 3'AG 19952881 Downstream 23bp
chr1 156621255 156621255 1 + C A UCEC 156621251 + 156621231 156621271 41 CTTTCCTCCTGCCACAGACTCGGCCCAGCCTTCTGCCATCC CTTTCCTCCTGCCACAGACTCGGCACAGCCTTCTGCCATCC < 41bp 0.368738759069782 0.785371682833041 0.4772732 0.3362339 prediction 0.570743365666082 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156621251 chr1:156621255 synonymous SNV . 0 25 hm5C_associated_SNPs_103212 0 0 0 0 1 BCAN chr1:156621248 3'AG 156621248 Downstream 8bp
chr17 28887662 28887662 1 + T G UCEC 28887659 + 28887639 28887679 41 CTCTCGGGCTCACCCCGTGCCTGTGGGATATGTATTTGCTG CTCTCGGGCTCACCCCGTGCCTGGGGGATATGTATTTGCTG < 41bp 0.394051603144557 0.785336649527712 0.074450135 0.25325692 prediction 0.570673299055424 Functional Gain - TBC1D29 ENSG00000266733 CDS Human protein_coding chr17:28887659 chr17:28887662 nonsynonymous SNV 0.012 0 24 hm5C_associated_SNPs_103213 0 0 0 0 2 TBC1D29 chr17:28887635 3'AG 28887635 Downstream 28bp
chr17 28887662 28887662 1 + T G UCEC 28887659 + 28887639 28887679 41 CTCTCGGGCTCACCCCGTGCCTGTGGGATATGTATTTGCTG CTCTCGGGCTCACCCCGTGCCTGGGGGATATGTATTTGCTG < 41bp 0.394051603144557 0.785336649527712 0.074450135 0.25325692 prediction 0.570673299055424 Functional Gain - TBC1D29 ENSG00000266733 CDS Human protein_coding chr17:28887659 chr17:28887662 nonsynonymous SNV 0.012 0 24 hm5C_associated_SNPs_103213 0 0 0 0 2 TBC1D29 chr17:28887734 5'GT 28887734 Upstream 73bp
chr2 220371465 220371465 1 + T G UCEC 220371462 + 220371442 220371482 41 CGAGGTGCTCATCCTGAACTCGATTGTTCTGCCACACAAGG CGAGGTGCTCATCCTGAACTCGAGTGTTCTGCCACACAAGG < 41bp 0.404903259596313 0.785324610095662 0.3888055 0.81647706 prediction 0.570649220191324 Functional Gain - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220371462 chr2:220371465 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_103215 0 0 1 0 1 GMPPA chr2:220371420 3'AG 220371420 Downstream 46bp
chr9 135102354 135102354 1 + C A KIRC 135102350 + 135102330 135102370 41 AAGTGCAAGAAGAATTTCCGCACCCGGTCCTGGCGGGCCGG AAGTGCAAGAAGAATTTCCGCACCAGGTCCTGGCGGGCCGG < 41bp 0.386866391338211 0.785297384245759 0.19224891 0.2361857 prediction 0.570594768491517 Functional Gain - NTNG2 ENSG00000196358 CDS Human protein_coding chr9:135102350 chr9:135102354 synonymous SNV . 0 25 hm5C_associated_SNPs_103217 0 0 0 0 1 NTNG2 chr9:135102408 5'GT 135102408 Upstream 55bp
chr1 196882003 196882003 1 + T A KIRC 196881999 + 196881979 196882019 41 AACAGCAGATGGAAATTCTTCAGGTTCAATTACATGTTTGC AACAGCAGATGGAAATTCTTCAGGATCAATTACATGTTTGC < 41bp 0.499989671318794 0.785280311095713 0.7482312 0.6763364 prediction 0.570560622191426 Functional Gain - CFHR4 ENSG00000134365 CDS Human protein_coding chr1:196881999 chr1:196882003 synonymous SNV . 0 25 hm5C_associated_SNPs_103220 0 0 0 0 1 CFHR4 chr1:196882052 5'GT 196882052 Upstream 50bp
chr2 234835196 234835196 1 + C A LUAD 234835192 + 234835172 234835212 41 TCACAGAAAAGATGTCCTTTCGGGCAGCCAGGCTCAGCATG TCACAGAAAAGATGTCCTTTCGGGAAGCCAGGCTCAGCATG < 41bp 0.61019437602352 0.895370813709874 0.84302247 0.9214164 prediction 0.570352875372709 Functional Gain - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234835192 chr2:234835196 nonsynonymous SNV 0.162 0 25 hm5C_associated_SNPs_103224 0 0 0 0 1 TRPM8 chr2:234835178 3'AG 234835178 Downstream 19bp
chr1 167088532 167088532 1 + C A LUAD 167088528 + 167088508 167088548 41 AGGCTGAAGAGGCTGGGAATCACCCACATTCTGAATGCTGC AGGCTGAAGAGGCTGGGAATCACCAACATTCTGAATGCTGC < 41bp 0.364389669002609 0.785176120090894 0.27010182 0.8313508 prediction 0.570352240181788 Functional Gain - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167088528 chr1:167088532 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_103225 0 0 0 0 1 DUSP27 chr1:167088486 3'AG 167088486 Downstream 47bp
chr7 76871034 76871034 1 + T A LUAD 76871030 + 76871010 76871050 41 CACAAGAGTCAGAGGTCCAACTGCTACAGAATGCCAAACGT CACAAGAGTCAGAGGTCCAACTGCAACAGAATGCCAAACGT < 41bp 0.465339562921425 0.7851501462941 0.07770735 0.11440754 prediction 0.570300292588199 Functional Gain - CCDC146 ENSG00000135205 CDS Human protein_coding chr7:76871030 chr7:76871034 nonsynonymous SNV 0.345 4 25 hm5C_associated_SNPs_103227 0 0 0 0 1 CCDC146 chr7:76871008 3'AG 76871008 Downstream 27bp
chr1 220970095 220970095 1 + T A rs17850677 220970091 + 220970071 220970111 41 GCCTGGTGCACTTCGAGCCTCACATGCGACCGAGACGTCCT GCCTGGTGCACTTCGAGCCTCACAAGCGACCGAGACGTCCT < 41bp 0.457815067035807 0.785083103673336 0.20526162 0.35059243 prediction 0.570166207346671 Functional Gain - MARC1 ENSG00000186205 CDS Human protein_coding chr1:220970091 chr1:220970095 nonsynonymous SNV 0.851 3 25 hm5C_associated_SNPs_103230 0 0 0 0 1 MARC1 chr1:220970147 5'GT 220970147 Upstream 53bp
chr9 130566803 130566803 1 + T G UCEC 130566801 + 130566781 130566821 41 GAGGACTTGGACCGGCTGAACATCATCCACGTCACTGGGAC GAGGACTTGGACCGGCTGAACAGCATCCACGTCACTGGGAC < 41bp 0.566878713048348 0.851948920781248 0.24250373 0.3243956 prediction 0.5701404154658 Functional Gain - FPGS ENSG00000136877 CDS Human protein_coding chr9:130566801 chr9:130566803 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_103232 0 0 1 0 2 FPGS chr9:130566778 3'AG 130566778 Downstream 26bp
chr9 130566803 130566803 1 + T G UCEC 130566801 + 130566781 130566821 41 GAGGACTTGGACCGGCTGAACATCATCCACGTCACTGGGAC GAGGACTTGGACCGGCTGAACAGCATCCACGTCACTGGGAC < 41bp 0.566878713048348 0.851948920781248 0.24250373 0.3243956 prediction 0.5701404154658 Functional Gain - FPGS ENSG00000136877 CDS Human protein_coding chr9:130566801 chr9:130566803 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_103232 0 0 1 0 2 FPGS chr9:130566831 5'GT 130566831 Upstream 29bp
chr15 59808884 59808884 1 + T A BLCA 59808880 + 59808860 59808900 41 ATATGGAGAAGAAGCTCAGCCAGATGTCAGCCAGGCTTGAC ATATGGAGAAGAAGCTCAGCCAGAAGTCAGCCAGGCTTGAC < 41bp 0.5331214714334 0.818138970083513 0.58899194 0.39575893 prediction 0.570034997300225 Functional Gain - FAM81A ENSG00000157470 CDS Human protein_coding chr15:59808880 chr15:59808884 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_103240 0 0 0 0 1 FAM81A chr15:59808844 3'AG 59808844 Downstream 41bp
chr1 20669084 20669084 1 + C G rs74056519 20669080 + 20669060 20669100 41 GTGAGAGAGCGGACTTCTGACAGCCGAAGCCCTGGAGATCT GTGAGAGAGCGGACTTCTGACAGCGGAAGCCCTGGAGATCT < 41bp 0.504675560016926 0.789653731675895 0.61307794 0.8954662 prediction 0.569956343317938 Functional Gain - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20669080 chr1:20669084 nonsynonymous SNV 0.025 0 25 hm5C_associated_SNPs_103244 0 0 0 0 1 VWA5B1 chr1:20669102 5'GT 20669102 Upstream 19bp
chr14 76012890 76012890 1 + T G SKCM 76012887 + 76012867 76012907 41 GGAACTGAAGTACTTCACGTCGGTGCTGAACAGCCACGAGC GGAACTGAAGTACTTCACGTCGGGGCTGAACAGCCACGAGC < 41bp 0.614808919480332 0.899740536981913 0.26586396 0.91227186 prediction 0.569863235003161 Functional Gain - BATF ENSG00000156127 CDS Human protein_coding chr14:76012887 chr14:76012890 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_103248 0 0 0 0 1 BATF chr14:76012805 3'AG 76012805 Downstream 86bp
chr17 72758264 72758264 1 + C A rs200926419 72758260 + 72758240 72758280 41 GTTCATCCGGTCAGTGGACCCAGACTCCCCGGCTGAGGCTT GTTCATCCGGTCAGTGGACCCAGAATCCCCGGCTGAGGCTT < 41bp 0.618620098210479 0.903537481592677 0.34268516 0.36098695 prediction 0.569834766764397 Functional Gain - SLC9A3R1 ENSG00000109062 CDS Human protein_coding chr17:72758260 chr17:72758264 nonsynonymous SNV 0.890 1 25 hm5C_associated_SNPs_103249 0 0 1 0 1 SLC9A3R1 chr17:72758312 5'GT 72758312 Upstream 49bp
chrX 69500667 69500667 1 + T A OV 69500663 + 69500643 69500683 41 CCTGATCCATCCGAAGCCATCTCATGGTGAGTGACCAGGTG CCTGATCCATCCGAAGCCATCTCAAGGTGAGTGACCAGGTG < 41bp 0.565808352755463 0.850712765902192 0.08443263 0.07613546 prediction 0.569808826293457 Functional Gain - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69500663 chrX:69500667 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_103250 0 0 0 0 2 ARR3 chrX:69500616 3'AG 69500616 Downstream 52bp
chrX 69500667 69500667 1 + T A OV 69500663 + 69500643 69500683 41 CCTGATCCATCCGAAGCCATCTCATGGTGAGTGACCAGGTG CCTGATCCATCCGAAGCCATCTCAAGGTGAGTGACCAGGTG < 41bp 0.565808352755463 0.850712765902192 0.08443263 0.07613546 prediction 0.569808826293457 Functional Gain - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69500663 chrX:69500667 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_103250 0 0 0 0 2 ARR3 chrX:69500668 5'GT 69500668 Upstream 2bp
chr1 156884472 156884472 1 + C A OV 156884468 + 156884448 156884488 41 CTGTGGGCTCCCAGCCCCCTCTGCCTCCGGGCCTACCCCCC CTGTGGGCTCCCAGCCCCCTCTGCATCCGGGCCTACCCCCC < 41bp 0.377274597730819 0.784875867378931 0.08658239 0.17055431 prediction 0.569751734757863 Functional Gain - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156884468 chr1:156884472 nonsynonymous SNV 0.971 3 25 hm5C_associated_SNPs_103253 0 0 0 0 1 PEAR1 chr1:156884439 3'AG 156884439 Downstream 34bp
chr17 61889361 61889361 1 + C G LUSC 61889360 + 61889340 61889380 41 AGTAAATGGAACTGGCTTACCCGGCGTCTGGTAGAATTTAC AGTAAATGGAACTGGCTTACCGGGCGTCTGGTAGAATTTAC < 41bp 0.514589971924876 0.799444873210448 0.7862781 0.90261555 prediction 0.569709802571144 Functional Gain - DDX42 ENSG00000198231 CDS Human protein_coding chr17:61889360 chr17:61889361 nonsynonymous SNV 0.987 1 22 hm5C_associated_SNPs_103255 0 0 1 0 1 DDX42 chr17:61889292 3'AG 61889292 Downstream 70bp
chr22 40804844 40804844 1 + C A LUAD 40804840 + 40804820 40804860 41 CTGACCCCGGAGGAGCTGCTCTACCGGGTAAGGGGGCCTCC CTGACCCCGGAGGAGCTGCTCTACAGGGTAAGGGGGCCTCC < 41bp 0.367700027341807 0.784843565660901 0.14284739 0.6450587 prediction 0.569687131321801 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40804840 chr22:40804844 synonymous SNV . 0 25 hm5C_associated_SNPs_103256 0 0 1 0 2 SGSM3 chr22:40804798 3'AG 40804798 Downstream 47bp
chr22 40804844 40804844 1 + C A LUAD 40804840 + 40804820 40804860 41 CTGACCCCGGAGGAGCTGCTCTACCGGGTAAGGGGGCCTCC CTGACCCCGGAGGAGCTGCTCTACAGGGTAAGGGGGCCTCC < 41bp 0.367700027341807 0.784843565660901 0.14284739 0.6450587 prediction 0.569687131321801 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40804840 chr22:40804844 synonymous SNV . 0 25 hm5C_associated_SNPs_103256 0 0 1 0 2 SGSM3 chr22:40804846 5'GT 40804846 Upstream 3bp
chr16 19613003 19613003 1 + C G OV 19612999 + 19612979 19613019 41 CTCCCAGGAAAGCTCGTGTACGAGCGCATCTTTTCCATGTG CTCCCAGGAAAGCTCGTGTACGAGGGCATCTTTTCCATGTG < 41bp 0.496884628364456 0.784838599662787 0.33382028 0.9095123 prediction 0.569677199325573 Functional Gain - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19612999 chr16:19613003 nonsynonymous SNV 0.948 4 25 hm5C_associated_SNPs_103258 0 0 1 0 2 C16orf62 chr16:19612986 3'AG 19612986 Downstream 18bp
chr16 19613003 19613003 1 + C G OV 19612999 + 19612979 19613019 41 CTCCCAGGAAAGCTCGTGTACGAGCGCATCTTTTCCATGTG CTCCCAGGAAAGCTCGTGTACGAGGGCATCTTTTCCATGTG < 41bp 0.496884628364456 0.784838599662787 0.33382028 0.9095123 prediction 0.569677199325573 Functional Gain - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19612999 chr16:19613003 nonsynonymous SNV 0.948 4 25 hm5C_associated_SNPs_103258 0 0 1 0 2 C16orf62 chr16:19613045 5'GT 19613045 Upstream 43bp
chr2 120388409 120388409 1 + T G ESCA 120388407 + 120388387 120388427 41 AACTCAGCTCTCTGGCAAAACATCAGTCTTGAGCATGAAAC AACTCAGCTCTCTGGCAAAACAGCAGTCTTGAGCATGAAAC < 41bp 0.460424253536881 0.784808745935802 0.14777586 0.28596923 prediction 0.569617491871604 Functional Gain - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120388407 chr2:120388409 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_103259 0 0 0 0 2 CFAP221 chr2:120388343 3'AG 120388343 Downstream 67bp
chr2 120388409 120388409 1 + T G ESCA 120388407 + 120388387 120388427 41 AACTCAGCTCTCTGGCAAAACATCAGTCTTGAGCATGAAAC AACTCAGCTCTCTGGCAAAACAGCAGTCTTGAGCATGAAAC < 41bp 0.460424253536881 0.784808745935802 0.14777586 0.28596923 prediction 0.569617491871604 Functional Gain - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120388407 chr2:120388409 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_103259 0 0 0 0 2 CFAP221 chr2:120388477 5'GT 120388477 Upstream 69bp
chr11 110327727 110327727 1 + T A rs186702065 110327723 + 110327703 110327743 41 TGAGAAGTTAGATGCAATCACTGATGAGGAGAATGACATGC TGAGAAGTTAGATGCAATCACTGAAGAGGAGAATGACATGC < 41bp 0.555453013382219 0.840194462015535 0.1389867 0.13353622 prediction 0.569482897266631 Functional Gain - FDX1 ENSG00000137714 CDS Human protein_coding chr11:110327723 chr11:110327727 nonsynonymous SNV 0.990 1 25 hm5C_associated_SNPs_103265 0 0 1 0 2 FDX1 chr11:110327642 3'AG 110327642 Downstream 86bp
chr11 110327727 110327727 1 + T A rs186702065 110327723 + 110327703 110327743 41 TGAGAAGTTAGATGCAATCACTGATGAGGAGAATGACATGC TGAGAAGTTAGATGCAATCACTGAAGAGGAGAATGACATGC < 41bp 0.555453013382219 0.840194462015535 0.1389867 0.13353622 prediction 0.569482897266631 Functional Gain - FDX1 ENSG00000137714 CDS Human protein_coding chr11:110327723 chr11:110327727 nonsynonymous SNV 0.990 1 25 hm5C_associated_SNPs_103265 0 0 1 0 2 FDX1 chr11:110327771 5'GT 110327771 Upstream 45bp
chr6 135524449 135524449 1 + C A rs114298899 135524445 + 135524425 135524465 41 CAGTACCTAAAAACAGGTCCCTGGCGAGCCCCTTGCAGGTA CAGTACCTAAAAACAGGTCCCTGGAGAGCCCCTTGCAGGTA < 41bp 0.443402695841218 0.784732016719753 0.07641989 0.13062724 prediction 0.569464033439505 Functional Gain - MYB ENSG00000118513 CDS Human protein_coding chr6:135524445 chr6:135524449 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_103266 0 0 1 0 2 MYB chr6:135524355 3'AG 135524355 Downstream 95bp
chr6 135524449 135524449 1 + C A rs114298899 135524445 + 135524425 135524465 41 CAGTACCTAAAAACAGGTCCCTGGCGAGCCCCTTGCAGGTA CAGTACCTAAAAACAGGTCCCTGGAGAGCCCCTTGCAGGTA < 41bp 0.443402695841218 0.784732016719753 0.07641989 0.13062724 prediction 0.569464033439505 Functional Gain - MYB ENSG00000118513 CDS Human protein_coding chr6:135524445 chr6:135524449 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_103266 0 0 1 0 2 MYB chr6:135524462 5'GT 135524462 Upstream 14bp
chr1 109271482 109271482 1 + C A LUAD 109271478 + 109271458 109271498 41 AAACACAGGCAGGACGGAGCCTGCCCAGCTACAGTGTGCCC AAACACAGGCAGGACGGAGCCTGCACAGCTACAGTGTGCCC < 41bp 0.632743361104719 0.917472036646329 0.03518462 0.15737051 prediction 0.569457351083219 Functional Gain - FNDC7 ENSG00000143107 CDS Human protein_coding chr1:109271478 chr1:109271482 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_103267 0 0 0 0 1 FNDC7 chr1:109271508 5'GT 109271508 Upstream 27bp
chr5 52211386 52211386 1 + T A HNSC 52211382 + 52211362 52211402 41 TTTAAATGGTGACGGTCTGACAGATGTGACTATTGGGGGCC TTTAAATGGTGACGGTCTGACAGAAGTGACTATTGGGGGCC < 41bp 0.534262891691181 0.818968968999109 0.8877616 0.89095825 prediction 0.569412154615855 Functional Gain - ITGA1 ENSG00000213949 CDS Human protein_coding chr5:52211382 chr5:52211386 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_103269 0 0 0 0 1 ITGA1 chr5:52211424 5'GT 52211424 Upstream 39bp
chr4 106858268 106858268 1 + C G LUAD 106858267 + 106858247 106858287 41 TCAACGGATATATGCTCATGCCGGATGGTTCCTGCTCAAGT TCAACGGATATATGCTCATGCGGGATGGTTCCTGCTCAAGT < 41bp 0.484022699091383 0.784674035571088 0.44173664 0.8979085 prediction 0.569348071142177 Functional Gain - NPNT ENSG00000168743 CDS Human protein_coding chr4:106858267 chr4:106858268 nonsynonymous SNV 0.915 4 22 hm5C_associated_SNPs_103270 0 0 0 0 1 NPNT chr4:106858285 5'GT 106858285 Upstream 18bp
chr10 75523334 75523334 1 + T G UCEC 75523331 + 75523311 75523351 41 GGCCAGGTGCCACCCTTAGTCACTACCAACTTCCTGGTGAA GGCCAGGTGCCACCCTTAGTCACGACCAACTTCCTGGTGAA < 41bp 0.60906119704428 0.893731020335351 0.13786677 0.5475583 prediction 0.569339646582143 Functional Gain - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75523331 chr10:75523334 synonymous SNV . 0 24 hm5C_associated_SNPs_103271 0 0 1 0 2 SEC24C chr10:75523248 3'AG 75523248 Downstream 87bp
chr10 75523334 75523334 1 + T G UCEC 75523331 + 75523311 75523351 41 GGCCAGGTGCCACCCTTAGTCACTACCAACTTCCTGGTGAA GGCCAGGTGCCACCCTTAGTCACGACCAACTTCCTGGTGAA < 41bp 0.60906119704428 0.893731020335351 0.13786677 0.5475583 prediction 0.569339646582143 Functional Gain - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75523331 chr10:75523334 synonymous SNV . 0 24 hm5C_associated_SNPs_103271 0 0 1 0 2 SEC24C chr10:75523359 5'GT 75523359 Upstream 26bp
chr19 41622185 41622185 1 + C A UCEC 41622181 + 41622161 41622201 41 GCTCAAGAGATAAGGGAAAGCTGCCTCCGGGACCCAGACCC GCTCAAGAGATAAGGGAAAGCTGCATCCGGGACCCAGACCC < 41bp 0.624714975132642 0.909369935847535 0.29738542 0.22377548 prediction 0.569309921429787 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41622181 chr19:41622185 nonsynonymous SNV 0.025 4 25 hm5C_associated_SNPs_103272 0 0 0 0 1 CYP2F1 chr19:41622264 5'GT 41622264 Upstream 80bp
chr5 79366218 79366218 1 + C A LUAD 79366214 + 79366194 79366234 41 CGACGAAGAACTGCCATGCTCTGCCAGGAACTGTAAAAAGG CGACGAAGAACTGCCATGCTCTGCAAGGAACTGTAAAAAGG < 41bp 0.351546855748332 0.784649546562891 0.08747268 0.47425178 prediction 0.569299093125783 Functional Gain - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79366214 chr5:79366218 synonymous SNV . 0 25 hm5C_associated_SNPs_103274 0 0 0 0 1 THBS4 chr5:79366233 5'GT 79366233 Upstream 16bp
chr1 228238556 228238556 1 + C A rs61742275 228238552 + 228238532 228238572 41 GATGGTGTCTCGGGAGTTCGCCGACGCCCGGGAGAACCGGC GATGGTGTCTCGGGAGTTCGCCGAAGCCCGGGAGAACCGGC < 41bp 0.394268701785448 0.784647923199083 0.9327748 0.926221 prediction 0.569295846398167 Functional Gain - WNT3A ENSG00000154342 CDS Human protein_coding chr1:228238552 chr1:228238556 nonsynonymous SNV 0.031 2 25 hm5C_associated_SNPs_103275 0 0 0 0 1 WNT3A chr1:228238622 5'GT 228238622 Upstream 67bp
chr16 19041664 19041664 1 + C A SKCM 19041660 + 19041640 19041680 41 TGTTAAGCACAATCGCCTCCCTGGCCCTGAGCCTTCTTTGG TGTTAAGCACAATCGCCTCCCTGGACCTGAGCCTTCTTTGG < 41bp 0.367311823373944 0.784644841684615 0.059319198 0.10968247 prediction 0.56928968336923 Functional Gain - TMC7 ENSG00000170537 CDS Human protein_coding chr16:19041660 chr16:19041664 nonsynonymous SNV 0.991 0 25 hm5C_associated_SNPs_103276 0 0 0 0 1 TMC7 chr16:19041691 5'GT 19041691 Upstream 28bp
chrX 153551630 153551630 1 + C A LUAD 153551626 + 153551606 153551646 41 ATTCCCAAGTGCACGATCTTCTACCCAACTGATGCCGTCTC ATTCCCAAGTGCACGATCTTCTACACAACTGATGCCGTCTC < 41bp 0.351142020764703 0.784633863852485 0.2134153 0.72199726 prediction 0.569267727704969 Functional Gain - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153551626 chrX:153551630 nonsynonymous SNV 0.894 4 25 hm5C_associated_SNPs_103278 0 0 0 0 2 TKTL1 chrX:153551553 3'AG 153551553 Downstream 78bp
chrX 153551630 153551630 1 + C A LUAD 153551626 + 153551606 153551646 41 ATTCCCAAGTGCACGATCTTCTACCCAACTGATGCCGTCTC ATTCCCAAGTGCACGATCTTCTACACAACTGATGCCGTCTC < 41bp 0.351142020764703 0.784633863852485 0.2134153 0.72199726 prediction 0.569267727704969 Functional Gain - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153551626 chrX:153551630 nonsynonymous SNV 0.894 4 25 hm5C_associated_SNPs_103278 0 0 0 0 2 TKTL1 chrX:153551683 5'GT 153551683 Upstream 54bp
chr5 75428131 75428131 1 + C G LUAD 75428130 + 75428110 75428150 41 GCTGAGACAGACCTCTGCATCCCAAATTCAGGATCTGGATG GCTGAGACAGACCTCTGCATCGCAAATTCAGGATCTGGATG < 41bp 0.49512871271951 0.784609676955668 0.07892856 0.14032844 prediction 0.569219353911335 Functional Gain - SV2C ENSG00000122012 CDS Human protein_coding chr5:75428130 chr5:75428131 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_103279 0 0 0 0 1 SV2C chr5:75428155 5'GT 75428155 Upstream 25bp
chr12 56532030 56532030 1 + C A SKCM 56532026 + 56532006 56532046 41 TTGCGCCTGGAGCGTCTCACCCCCCGTCCCACTGCTGCTGA TTGCGCCTGGAGCGTCTCACCCCCAGTCCCACTGCTGCTGA < 41bp 0.365655219001907 0.784608995859861 0.13444883 0.21806875 prediction 0.569217991719722 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532026 chr12:56532030 nonsynonymous SNV 0.095 0 25 hm5C_associated_SNPs_103280 0 0 1 0 2 ESYT1 chr12:56531967 3'AG 56531967 Downstream 64bp
chr12 56532030 56532030 1 + C A SKCM 56532026 + 56532006 56532046 41 TTGCGCCTGGAGCGTCTCACCCCCCGTCCCACTGCTGCTGA TTGCGCCTGGAGCGTCTCACCCCCAGTCCCACTGCTGCTGA < 41bp 0.365655219001907 0.784608995859861 0.13444883 0.21806875 prediction 0.569217991719722 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532026 chr12:56532030 nonsynonymous SNV 0.095 0 25 hm5C_associated_SNPs_103280 0 0 1 0 2 ESYT1 chr12:56532056 5'GT 56532056 Upstream 27bp
chr12 53450811 53450811 1 + T G COAD 53450808 + 53450788 53450828 41 TATCCCCAGGGCGGACCAGGCACTGGCCACTCTTACCATGC TATCCCCAGGGCGGACCAGGCACGGGCCACTCTTACCATGC < 41bp 0.397956591914222 0.784592940559204 0.42519474 0.75561357 prediction 0.569185881118407 Functional Gain - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53450808 chr12:53450811 nonsynonymous SNV 0.990 5 24 hm5C_associated_SNPs_103282 0 0 1 0 2 TNS2 chr12:53450797 3'AG 53450797 Downstream 15bp
chr12 53450811 53450811 1 + T G COAD 53450808 + 53450788 53450828 41 TATCCCCAGGGCGGACCAGGCACTGGCCACTCTTACCATGC TATCCCCAGGGCGGACCAGGCACGGGCCACTCTTACCATGC < 41bp 0.397956591914222 0.784592940559204 0.42519474 0.75561357 prediction 0.569185881118407 Functional Gain - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53450808 chr12:53450811 nonsynonymous SNV 0.990 5 24 hm5C_associated_SNPs_103282 0 0 1 0 2 TNS2 chr12:53450880 5'GT 53450880 Upstream 70bp
chr3 119331936 119331936 1 + T A LUSC 119331932 + 119331912 119331952 41 GCTTGGATGCTGGAGATGCCCTCTTCGTGGAAGCCATCCAC GCTTGGATGCTGGAGATGCCCTCTACGTGGAAGCCATCCAC < 41bp 0.56662869073122 0.851211296991269 0.0142223835 0.06775963 prediction 0.569165212520096 Functional Gain - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119331932 chr3:119331936 nonsynonymous SNV 0.986 5 25 hm5C_associated_SNPs_103284 0 0 0 2 2 PLA1A chr3:119331864 3'AG 119331864 Downstream 73bp
chr3 119331936 119331936 1 + T A LUSC 119331932 + 119331912 119331952 41 GCTTGGATGCTGGAGATGCCCTCTTCGTGGAAGCCATCCAC GCTTGGATGCTGGAGATGCCCTCTACGTGGAAGCCATCCAC < 41bp 0.56662869073122 0.851211296991269 0.0142223835 0.06775963 prediction 0.569165212520096 Functional Gain - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119331932 chr3:119331936 nonsynonymous SNV 0.986 5 25 hm5C_associated_SNPs_103284 0 0 0 2 2 PLA1A chr3:119331965 5'GT 119331965 Upstream 30bp
chr12 125576014 125576014 1 + C G CESC 125576010 + 125575990 125576030 41 AGCACGCTGTCGAGGCGATGCTGGCTGCGGCAAGCATTGGT AGCACGCTGTCGAGGCGATGCTGGGTGCGGCAAGCATTGGT < 41bp 0.508017784110919 0.792562936462474 0.56224304 0.8937398 prediction 0.569090304703111 Functional Gain - AACS ENSG00000081760 CDS Human protein_coding chr12:125576010 chr12:125576014 nonsynonymous SNV 0.526 2 25 hm5C_associated_SNPs_103285 0 0 1 1 2 AACS chr12:125575972 3'AG 125575972 Downstream 43bp
chr12 125576014 125576014 1 + C G CESC 125576010 + 125575990 125576030 41 AGCACGCTGTCGAGGCGATGCTGGCTGCGGCAAGCATTGGT AGCACGCTGTCGAGGCGATGCTGGGTGCGGCAAGCATTGGT < 41bp 0.508017784110919 0.792562936462474 0.56224304 0.8937398 prediction 0.569090304703111 Functional Gain - AACS ENSG00000081760 CDS Human protein_coding chr12:125576010 chr12:125576014 nonsynonymous SNV 0.526 2 25 hm5C_associated_SNPs_103285 0 0 1 1 2 AACS chr12:125576069 5'GT 125576069 Upstream 56bp
chr8 1497755 1497755 1 + C A OV 1497751 + 1497731 1497771 41 GGTCTACGCTGACGGTCAGCCAGGCCAAGGAGGCCTACCGC GGTCTACGCTGACGGTCAGCCAGGACAAGGAGGCCTACCGC < 41bp 0.615637026993695 0.900174426925649 0.56650096 0.48811325 prediction 0.569074799863909 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1497751 chr8:1497755 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_103286 0 0 0 0 1 DLGAP2 chr8:1497849 5'GT 1497849 Upstream 95bp
chr8 146278737 146278737 1 + C G LUAD 146278736 + 146278716 146278756 41 GCAGCAAAAGAACGCCCTTGCCCCGGAAGAGGCAGCTGATG GCAGCAAAAGAACGCCCTTGCGCCGGAAGAGGCAGCTGATG < 41bp 0.536618959544957 0.821148574730979 0.15199766 0.49840397 prediction 0.569059230372044 Functional Gain - C8orf33 ENSG00000182307 CDS Human protein_coding chr8:146278736 chr8:146278737 nonsynonymous SNV 0.417 3 22 hm5C_associated_SNPs_103287 0 0 1 1 2 C8orf33 chr8:146278683 3'AG 146278683 Downstream 55bp
chr8 146278737 146278737 1 + C G LUAD 146278736 + 146278716 146278756 41 GCAGCAAAAGAACGCCCTTGCCCCGGAAGAGGCAGCTGATG GCAGCAAAAGAACGCCCTTGCGCCGGAAGAGGCAGCTGATG < 41bp 0.536618959544957 0.821148574730979 0.15199766 0.49840397 prediction 0.569059230372044 Functional Gain - C8orf33 ENSG00000182307 CDS Human protein_coding chr8:146278736 chr8:146278737 nonsynonymous SNV 0.417 3 22 hm5C_associated_SNPs_103287 0 0 1 1 2 C8orf33 chr8:146278829 5'GT 146278829 Upstream 93bp
chr13 53603077 53603077 1 + T A rs35790097 53603073 + 53603053 53603093 41 CCAATTCCCAGCCCCGGCTTCAGCTCTTTCCCAGGTGTTGA CCAATTCCCAGCCCCGGCTTCAGCACTTTCCCAGGTGTTGA < 41bp 0.525380286470567 0.809882311397631 0.09219444 0.13935861 prediction 0.569004049854127 Functional Gain - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53603073 chr13:53603077 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_103290 0 0 0 0 1 OLFM4 chr13:53603175 5'GT 53603175 Upstream 99bp
chr2 79253884 79253884 1 + C G LUAD 79253883 + 79253863 79253903 41 CCTCTCCACGGATCAGCTGTCCCAAAGGCTCCAAGGCCTAT CCTCTCCACGGATCAGCTGTCGCAAAGGCTCCAAGGCCTAT < 41bp 0.550374916060619 0.834876260967005 0.06780115 0.12592351 prediction 0.569002689812772 Functional Gain - REG3G ENSG00000143954 CDS Human protein_coding chr2:79253883 chr2:79253884 nonsynonymous SNV 0.127 4 22 hm5C_associated_SNPs_103291 0 0 0 0 2 REG3G chr2:79253839 3'AG 79253839 Downstream 46bp
chr2 79253884 79253884 1 + C G LUAD 79253883 + 79253863 79253903 41 CCTCTCCACGGATCAGCTGTCCCAAAGGCTCCAAGGCCTAT CCTCTCCACGGATCAGCTGTCGCAAAGGCTCCAAGGCCTAT < 41bp 0.550374916060619 0.834876260967005 0.06780115 0.12592351 prediction 0.569002689812772 Functional Gain - REG3G ENSG00000143954 CDS Human protein_coding chr2:79253883 chr2:79253884 nonsynonymous SNV 0.127 4 22 hm5C_associated_SNPs_103291 0 0 0 0 2 REG3G chr2:79253957 5'GT 79253957 Upstream 74bp
chr15 84759008 84759008 1 + T G rs140114591 84759005 + 84758985 84759025 41 GATGAACAGATCCGAGGGATCACTATGAAATCCAGTGCCAT GATGAACAGATCCGAGGGATCACGATGAAATCCAGTGCCAT < 41bp 0.514202202041449 0.79868682089312 0.13157746 0.8796671 prediction 0.568969237703343 Functional Gain - EFTUD1P1 ENSG00000259404 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:84759005 chr15:84759008 . . 0 24 hm5C_associated_SNPs_103293 0 0 0 0 2 EFTUD1P1 chr15:84758961 3'AG 84758961 Downstream 48bp
chr15 84759008 84759008 1 + T G rs140114591 84759005 + 84758985 84759025 41 GATGAACAGATCCGAGGGATCACTATGAAATCCAGTGCCAT GATGAACAGATCCGAGGGATCACGATGAAATCCAGTGCCAT < 41bp 0.514202202041449 0.79868682089312 0.13157746 0.8796671 prediction 0.568969237703343 Functional Gain - EFTUD1P1 ENSG00000259404 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:84759005 chr15:84759008 . . 0 24 hm5C_associated_SNPs_103293 0 0 0 0 2 EFTUD1P1 chr15:84759045 5'GT 84759045 Upstream 38bp
chr7 76140988 76140988 1 + C G HNSC 76140987 + 76140967 76141007 41 CCTGCAGCCTCCAGGGGCTTCCAGAACCCGGAGACACTGGC CCTGCAGCCTCCAGGGGCTTCGAGAACCCGGAGACACTGGC < 41bp 0.490611036606028 0.784453368356569 0.5979264 0.5839426 prediction 0.568906736713137 Functional Gain - UPK3B ENSG00000243566 CDS Human protein_coding chr7:76140987 chr7:76140988 nonsynonymous SNV 0.954 0 22 hm5C_associated_SNPs_103295 0 0 0 0 1 UPK3B chr7:76140974 3'AG 76140974 Downstream 15bp
chr7 142836666 142836666 1 + T G HNSC 142836664 + 142836644 142836684 41 TTCGGGAATTAGGCATCTGCCCTGATGATGCTGCTGTAATC TTCGGGAATTAGGCATCTGCCCGGATGATGCTGCTGTAATC < 41bp 0.552246227943052 0.836680495857764 0.096992046 0.39675277 prediction 0.568868535829425 Functional Gain - PIP ENSG00000159763 CDS Human protein_coding chr7:142836664 chr7:142836666 synonymous SNV . 0 23 hm5C_associated_SNPs_103299 0 0 0 0 1 PIP chr7:142836611 3'AG 142836611 Downstream 56bp
chr1 25628159 25628159 1 + C G rs188690303 25628158 + 25628138 25628178 41 AGGGTCATCCTTGGCTCACCCCCAAGGGAAGATCAGCAAGG AGGGTCATCCTTGGCTCACCCGCAAGGGAAGATCAGCAAGG < 41bp 0.519221689643942 0.80363465308893 0.06956801 0.1164234 prediction 0.568825926889975 Functional Gain - RHD ENSG00000187010 CDS Human protein_coding chr1:25628158 chr1:25628159 synonymous SNV . 0 22 hm5C_associated_SNPs_103301 0 0 1 0 1 RHD chr1:25628177 5'GT 25628177 Upstream 19bp
chr5 176304684 176304684 1 + T G COAD 176304681 + 176304661 176304701 41 GGAGCCTGCGCCTCAAAAAGCAGTCGTGCGAGGGCAGCTGG GGAGCCTGCGCCTCAAAAAGCAGGCGTGCGAGGGCAGCTGG < 41bp 0.390050246461174 0.78436753007933 0.7985747 0.91875535 prediction 0.56873506015866 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176304681 chr5:176304684 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_103307 0 0 0 0 1 UNC5A chr5:176304704 5'GT 176304704 Upstream 21bp
chr5 128797410 128797410 1 + C A BRCA 128797406 + 128797386 128797426 41 ACACCGGAGCTGTGCTGCGGCACCCTGGCTCGCTGGCTTCT ACACCGGAGCTGTGCTGCGGCACCATGGCTCGCTGGCTTCT < 41bp 0.373991632573963 0.784350762766591 0.34496984 0.5896954 prediction 0.568701525533182 Functional Gain - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:128797406 chr5:128797410 nonsynonymous SNV 0.582 2 25 hm5C_associated_SNPs_103309 0 0 0 1 1 ADAMTS19 chr5:128797450 5'GT 128797450 Upstream 41bp
chr22 42290878 42290878 1 + C A COAD 42290874 + 42290854 42290894 41 TCTGCAAGAACCTGCTGGAGCGAGCTATAGAGTCCTTGGTG TCTGCAAGAACCTGCTGGAGCGAGATATAGAGTCCTTGGTG < 41bp 0.392678615817536 0.784316916855578 0.8282635 0.88250184 prediction 0.568633833711157 Functional Gain - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42290874 chr22:42290878 nonsynonymous SNV 0.895 4 25 hm5C_associated_SNPs_103310 0 0 1 0 2 SREBF2 chr22:42290824 3'AG 42290824 Downstream 55bp
chr22 42290878 42290878 1 + C A COAD 42290874 + 42290854 42290894 41 TCTGCAAGAACCTGCTGGAGCGAGCTATAGAGTCCTTGGTG TCTGCAAGAACCTGCTGGAGCGAGATATAGAGTCCTTGGTG < 41bp 0.392678615817536 0.784316916855578 0.8282635 0.88250184 prediction 0.568633833711157 Functional Gain - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42290874 chr22:42290878 nonsynonymous SNV 0.895 4 25 hm5C_associated_SNPs_103310 0 0 1 0 2 SREBF2 chr22:42290941 5'GT 42290941 Upstream 64bp
chr17 35297618 35297618 1 + C G GBM 35297614 + 35297594 35297634 41 GGTACCAAATGCGCAGGCTGCGCTCAGGGCATCTCCCCTAG GGTACCAAATGCGCAGGCTGCGCTGAGGGCATCTCCCCTAG < 41bp 0.515933214748808 0.800246247111423 0.05289957 0.37413955 prediction 0.56862606472523 Functional Gain - LHX1 ENSG00000132130 CDS Human other chr17:35297614 chr17:35297618 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_103311 0 0 0 0 1 LHX1 chr17:35297587 3'AG 35297587 Downstream 32bp
chr10 134912182 134912182 1 + T A BLCA 134912178 + 134912158 134912198 41 GCCGCAAGGGCCGGCACACGCTCCTGAATTTCTGCTTCCAC GCCGCAAGGGCCGGCACACGCTCCAGAATTTCTGCTTCCAC < 41bp 0.574018353174795 0.858262888457319 0.18239826 0.8521904 prediction 0.568489070565049 Functional Gain - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134912178 chr10:134912182 nonsynonymous SNV 0.493 3 25 hm5C_associated_SNPs_103316 0 0 0 0 2 ADGRA1 chr10:134912144 3'AG 134912144 Downstream 39bp
chr10 134912182 134912182 1 + T A BLCA 134912178 + 134912158 134912198 41 GCCGCAAGGGCCGGCACACGCTCCTGAATTTCTGCTTCCAC GCCGCAAGGGCCGGCACACGCTCCAGAATTTCTGCTTCCAC < 41bp 0.574018353174795 0.858262888457319 0.18239826 0.8521904 prediction 0.568489070565049 Functional Gain - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134912178 chr10:134912182 nonsynonymous SNV 0.493 3 25 hm5C_associated_SNPs_103316 0 0 0 0 2 ADGRA1 chr10:134912267 5'GT 134912267 Upstream 86bp
chr16 1291621 1291621 1 + C A rs372314315 1291617 + 1291597 1291637 41 CGTCTCCAGCCACGTCCACACGGTCACCCTGCCCCCTGCCT CGTCTCCAGCCACGTCCACACGGTAACCCTGCCCCCTGCCT < 41bp 0.392630801479711 0.784205479243391 0.36363775 0.5110342 prediction 0.568410958486782 Functional Gain - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291617 chr16:1291621 synonymous SNV . 0 25 hm5C_associated_SNPs_103322 0 0 0 0 1 TPSAB1 chr16:1291700 5'GT 1291700 Upstream 80bp
chr19 51647734 51647734 1 + T A LUAD 51647730 + 51647710 51647750 41 GGCTGCTTCCAGAATCTGACCTGCTCTGTGCCCTGGGCCTG GGCTGCTTCCAGAATCTGACCTGCACTGTGCCCTGGGCCTG < 41bp 0.462463171655088 0.78420095157076 0.2230382 0.38965073 prediction 0.56840190314152 Functional Gain - SIGLEC7 ENSG00000168995 CDS Human protein_coding chr19:51647730 chr19:51647734 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_103324 0 0 0 0 1 SIGLEC7 chr19:51647663 3'AG 51647663 Downstream 72bp
chr6 117246731 117246731 1 + C A LGG 117246727 + 117246707 117246747 41 GAATGAAAGCCACGTGGAGACAACCTATCTCCCTCTGCCAT GAATGAAAGCCACGTGGAGACAACATATCTCCCTCTGCCAT < 41bp 0.370317050568225 0.784186236234592 0.017507672 0.08105579 prediction 0.568372472469183 Functional Gain - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117246727 chr6:117246731 synonymous SNV . 0 25 hm5C_associated_SNPs_103327 0 0 0 0 1 RFX6 chr6:117246822 5'GT 117246822 Upstream 92bp
chr1 202156432 202156432 1 + C A rs573486133 202156428 + 202156408 202156448 41 TCTCTGTGATGAACTTCGCACAGGCGTGTGCCAAGAGGGCA TCTCTGTGATGAACTTCGCACAGGAGTGTGCCAAGAGGGCA < 41bp 0.435304452938837 0.784174758953537 0.5171149 0.62104535 prediction 0.568349517907074 Functional Gain - PTPRVP ENSG00000243323 ncRNA_exonic Human processed_transcript chr1:202156428 chr1:202156432 . . 0 25 hm5C_associated_SNPs_103331 0 0 1 0 2 PTPRVP chr1:202156397 3'AG 202156397 Downstream 36bp
chr1 202156432 202156432 1 + C A rs573486133 202156428 + 202156408 202156448 41 TCTCTGTGATGAACTTCGCACAGGCGTGTGCCAAGAGGGCA TCTCTGTGATGAACTTCGCACAGGAGTGTGCCAAGAGGGCA < 41bp 0.435304452938837 0.784174758953537 0.5171149 0.62104535 prediction 0.568349517907074 Functional Gain - PTPRVP ENSG00000243323 ncRNA_exonic Human processed_transcript chr1:202156428 chr1:202156432 . . 0 25 hm5C_associated_SNPs_103331 0 0 1 0 2 PTPRVP chr1:202156484 5'GT 202156484 Upstream 53bp
chr1 6646057 6646057 1 + T G STAD 6646055 + 6646035 6646075 41 GGAAGGAGAACCTCCTGGAGCATGAAGCCCGGAATTGCATG GGAAGGAGAACCTCCTGGAGCAGGAAGCCCGGAATTGCATG < 41bp 0.466099749874583 0.784132614005693 0.30084938 0.503697 prediction 0.568265228011385 Functional Gain - ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6646055 chr1:6646057 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_103335 0 0 1 0 2 ZBTB48 chr1:6645979 3'AG 6645979 Downstream 79bp
chr1 6646057 6646057 1 + T G STAD 6646055 + 6646035 6646075 41 GGAAGGAGAACCTCCTGGAGCATGAAGCCCGGAATTGCATG GGAAGGAGAACCTCCTGGAGCAGGAAGCCCGGAATTGCATG < 41bp 0.466099749874583 0.784132614005693 0.30084938 0.503697 prediction 0.568265228011385 Functional Gain - ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6646055 chr1:6646057 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_103335 0 0 1 0 2 ZBTB48 chr1:6646090 5'GT 6646090 Upstream 34bp
chr12 10342551 10342551 1 + C A LUSC 10342547 + 10342527 10342567 41 AGGATCCTGGCTGTGGCTCACTCCCACAGCTCCCTGGGCCA AGGATCCTGGCTGTGGCTCACTCCAACAGCTCCCTGGGCCA < 41bp 0.628564919074232 0.9126868387297 0.14917037 0.9690248 prediction 0.568243839310937 Functional Gain - TMEM52B ENSG00000165685 CDS Human protein_coding chr12:10342547 chr12:10342551 nonsynonymous SNV 0.869 1 25 hm5C_associated_SNPs_103336 0 0 0 0 1 TMEM52B chr12:10342495 3'AG 10342495 Downstream 57bp
chr9 136405803 136405803 1 + C A MESO 136405799 + 136405779 136405819 41 CAGCGGCAGCTCATGGTCCCCGCCCGCGACGGCACATCCTG CAGCGGCAGCTCATGGTCCCCGCCAGCGACGGCACATCCTG < 41bp 0.366885664254027 0.784111860373229 0.016456455 0.060595423 prediction 0.568223720746458 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136405799 chr9:136405803 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_103337 0 0 0 0 2 ADAMTSL2 chr9:136405720 3'AG 136405720 Downstream 84bp
chr9 136405803 136405803 1 + C A MESO 136405799 + 136405779 136405819 41 CAGCGGCAGCTCATGGTCCCCGCCCGCGACGGCACATCCTG CAGCGGCAGCTCATGGTCCCCGCCAGCGACGGCACATCCTG < 41bp 0.366885664254027 0.784111860373229 0.016456455 0.060595423 prediction 0.568223720746458 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136405799 chr9:136405803 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_103337 0 0 0 0 2 ADAMTSL2 chr9:136405865 5'GT 136405865 Upstream 63bp
chr19 14640495 14640495 1 + C A HNSC 14640491 + 14640471 14640511 41 CAGCAGCCGCGGAGCAGTAGCCGCCGTGGGAGGGAGCCATG CAGCAGCCGCGGAGCAGTAGCCGCAGTGGGAGGGAGCCATG < 41bp 0.498525605818427 0.784088493526979 0.4388242 0.4901504 prediction 0.568176987053958 Functional Gain - TECR ENSG00000099797;ENSG00000132002 UTR5 Human protein_coding chr19:14640491 chr19:14640495 . . 0 25 hm5C_associated_SNPs_103338 0 0 1 0 1 TECR chr19:14640523 5'GT 14640523 Upstream 29bp
chr7 87563794 87563794 1 + T G rs201972241 87563791 + 87563771 87563811 41 CGGCAGCACCATGCAGGCGGCAGTGGCTGTGTCCGTGCCCT CGGCAGCACCATGCAGGCGGCAGGGGCTGTGTCCGTGCCCT < 41bp 0.430821107491005 0.784069833463659 0.7969959 0.9121959 prediction 0.568139666927318 Functional Gain - ADAM22 ENSG00000008277 CDS Human protein_coding chr7:87563791 chr7:87563794 nonsynonymous SNV 0.791 0 24 hm5C_associated_SNPs_103339 0 0 1 0 1 ADAM22 chr7:87563865 5'GT 87563865 Upstream 72bp
chr12 644365 644365 1 + T G COAD 644362 + 644342 644382 41 CTGGAGAGAACTGGCCAAGGCTCTGGCCAGCAGGAACATTC CTGGAGAGAACTGGCCAAGGCTCGGGCCAGCAGGAACATTC < 41bp 0.396704917417713 0.784066147642171 0.29962486 0.32693666 prediction 0.568132295284342 Functional Gain - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:644362 chr12:644365 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_103340 0 0 0 0 1 B4GALNT3 chr12:644435 5'GT 644435 Upstream 71bp
chr16 20429546 20429546 1 + C A rs144548629 20429542 + 20429522 20429562 41 GACAGAATGATGCTGGTACTCCCACGGCTCCCGGAGTGGTG GACAGAATGATGCTGGTACTCCCAAGGCTCCCGGAGTGGTG < 41bp 0.37553645354887 0.784048609714545 0.21491244 0.22457367 prediction 0.568097219429091 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20429542 chr16:20429546 synonymous SNV . 0 25 hm5C_associated_SNPs_103343 0 0 0 0 1 ACSM5 chr16:20429591 5'GT 20429591 Upstream 46bp
chr14 77236320 77236320 1 + T A GBM 77236316 + 77236296 77236336 41 CTGTCCCCAGATCCCCATACCGAGTGTGCCTACGTTCCAGC CTGTCCCCAGATCCCCATACCGAGAGTGCCTACGTTCCAGC < 41bp 0.54458496198538 0.828597843965234 0.7454158 0.93829834 prediction 0.568025763959709 Functional Gain - VASH1 ENSG00000071246 CDS Human protein_coding chr14:77236316 chr14:77236320 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_103346 0 0 1 0 2 VASH1 chr14:77236306 3'AG 77236306 Downstream 15bp
chr14 77236320 77236320 1 + T A GBM 77236316 + 77236296 77236336 41 CTGTCCCCAGATCCCCATACCGAGTGTGCCTACGTTCCAGC CTGTCCCCAGATCCCCATACCGAGAGTGCCTACGTTCCAGC < 41bp 0.54458496198538 0.828597843965234 0.7454158 0.93829834 prediction 0.568025763959709 Functional Gain - VASH1 ENSG00000071246 CDS Human protein_coding chr14:77236316 chr14:77236320 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_103346 0 0 1 0 2 VASH1 chr14:77236394 5'GT 77236394 Upstream 75bp
chr2 198365925 198365925 1 + C A SARC 198365921 + 198365901 198365941 41 AATCTCAAGGAAAAGTATTGCAAGCAACAGTAGTCGCTGTT AATCTCAAGGAAAAGTATTGCAAGAAACAGTAGTCGCTGTT < 41bp 0.384595167725572 0.783985287467417 0.2288306 0.7609597 prediction 0.567970574934834 Functional Gain - HSPE1;HSPE1-MOB4 ENSG00000115541;ENSG00000270757 CDS Human other chr2:198365921 chr2:198365925 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_103347 0 0 0 0 1 HSPE1;HSPE1-MOB4 chr2:198365962 5'GT 198365962 Upstream 38bp
chr20 30412101 30412101 1 + C G rs41293106 30412100 + 30412080 30412120 41 CTGTACCTGCATGGAGAAAGCCACAGGCCTCAAGCTGGCAG CTGTACCTGCATGGAGAAAGCGACAGGCCTCAAGCTGGCAG < 41bp 0.548313112100733 0.832282400638133 0.36640936 0.38694856 prediction 0.567938577074799 Functional Gain - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30412100 chr20:30412101 synonymous SNV . 0 22 hm5C_associated_SNPs_103348 0 0 0 0 2 MYLK2 chr20:30412062 3'AG 30412062 Downstream 40bp
chr20 30412101 30412101 1 + C G rs41293106 30412100 + 30412080 30412120 41 CTGTACCTGCATGGAGAAAGCCACAGGCCTCAAGCTGGCAG CTGTACCTGCATGGAGAAAGCGACAGGCCTCAAGCTGGCAG < 41bp 0.548313112100733 0.832282400638133 0.36640936 0.38694856 prediction 0.567938577074799 Functional Gain - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30412100 chr20:30412101 synonymous SNV . 0 22 hm5C_associated_SNPs_103348 0 0 0 0 2 MYLK2 chr20:30412155 5'GT 30412155 Upstream 55bp
chr11 64217040 64217040 1 + C A rs192715586 64217036 + 64217016 64217056 41 CATGGCTGGTCTGGCAGCTGCTGTCGGTGTCGCGACCCCAC CATGGCTGGTCTGGCAGCTGCTGTAGGTGTCGCGACCCCAC < 41bp 0.403779951553143 0.783952351445342 0.19336408 0.38237086 prediction 0.567904702890685 Functional Gain - LOC100996455 ENSG00000181908 CDS Human lincRNA chr11:64217036 chr11:64217040 synonymous SNV . 0 25 hm5C_associated_SNPs_103349 0 0 0 0 1 LOC100996455 chr11:64217124 5'GT 64217124 Upstream 85bp
chr16 89627460 89627460 1 + T G rs2280370 89627458 + 89627438 89627478 41 CGTGGTTCAACCAGCCGGCCCGTAAGATCCGCAGGTGAGCC CGTGGTTCAACCAGCCGGCCCGGAAGATCCGCAGGTGAGCC < 41bp 0.454249773284514 0.783941179216596 0.17595801 0.5634047 prediction 0.567882358433192 Functional Gain - RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627458 chr16:89627460 synonymous SNV . 0 23 hm5C_associated_SNPs_103352 0 0 1 0 1 RPL13 chr16:89627471 5'GT 89627471 Upstream 12bp
chr12 38710774 38710774 1 + T A OV 38710770 + 38710750 38710790 41 GTGTCCTGCCTCCTCTTCTCCGCCTTCAGCCGGGCGCTGCG GTGTCCTGCCTCCTCTTCTCCGCCATCAGCCGGGCGCTGCG < 41bp 0.540814295148897 0.824754020029265 0.06717476 0.3467124 prediction 0.567879449760736 Functional Gain - ALG10B ENSG00000175548 CDS Human protein_coding chr12:38710770 chr12:38710774 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_103353 0 0 1 0 1 ALG10B chr12:38710866 5'GT 38710866 Upstream 93bp
chr2 74781871 74781871 1 + C G rs13416172 74781870 + 74781850 74781890 41 GCCAGGAAGCGCGGAAGGAACCGCCGGGGGCCATGGACGGA GCCAGGAAGCGCGGAAGGAACGGCCGGGGGCCATGGACGGA < 41bp 0.518962243931167 0.802869954405426 0.3535064 0.3786543 prediction 0.567815420948518 Functional Gain - DOK1 ENSG00000115325 UTR5 Human protein_coding chr2:74781870 chr2:74781871 . . 0 22 hm5C_associated_SNPs_103357 0 0 0 0 1 DOK1 chr2:74781941 5'GT 74781941 Upstream 71bp
chr5 50124193 50124193 1 + T A UCEC 50124189 + 50124169 50124209 41 ACTCCATCCTGAGGAATGGTCTGGTTGTTGCTTCTAATACA ACTCCATCCTGAGGAATGGTCTGGATGTTGCTTCTAATACA < 41bp 0.474092441827981 0.783891269885884 0.13462543 0.24452776 prediction 0.567782539771768 Functional Gain - PARP8 ENSG00000151883 CDS Human protein_coding chr5:50124189 chr5:50124193 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_103359 0 0 0 0 2 PARP8 chr5:50124146 3'AG 50124146 Downstream 48bp
chr5 50124193 50124193 1 + T A UCEC 50124189 + 50124169 50124209 41 ACTCCATCCTGAGGAATGGTCTGGTTGTTGCTTCTAATACA ACTCCATCCTGAGGAATGGTCTGGATGTTGCTTCTAATACA < 41bp 0.474092441827981 0.783891269885884 0.13462543 0.24452776 prediction 0.567782539771768 Functional Gain - PARP8 ENSG00000151883 CDS Human protein_coding chr5:50124189 chr5:50124193 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_103359 0 0 0 0 2 PARP8 chr5:50124218 5'GT 50124218 Upstream 26bp
chr2 155102434 155102434 1 + T G UCEC 155102431 + 155102411 155102451 41 TTAACTGGAAACTGAATTTCCGCTGGTATCCTGTTCCCCAA TTAACTGGAAACTGAATTTCCGCGGGTATCCTGTTCCCCAA < 41bp 0.575539408789243 0.859420845502737 0.12944591 0.8016691 prediction 0.567762873426988 Functional Gain - GALNT13 ENSG00000144278 CDS Human protein_coding chr2:155102431 chr2:155102434 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_103360 0 0 1 0 1 GALNT13 chr2:155102495 5'GT 155102495 Upstream 62bp
chr7 99051717 99051717 1 + C A rs139528752 99051713 + 99051693 99051733 41 GCAGAGTCAAAACAGCAGCGCGGGCAACCGGGGACCCCGGC GCAGAGTCAAAACAGCAGCGCGGGAAACCGGGGACCCCGGC < 41bp 0.622321664192294 0.906198225181046 0.8971172 0.90886635 prediction 0.567753121977503 Functional Gain - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99051713 chr7:99051717 nonsynonymous SNV 0.980 0 25 hm5C_associated_SNPs_103361 0 0 1 0 3 CPSF4 chr7:99051664 3'AG 99051664 Downstream 54bp
chr7 99051717 99051717 1 + C A rs139528752 99051713 + 99051693 99051733 41 GCAGAGTCAAAACAGCAGCGCGGGCAACCGGGGACCCCGGC GCAGAGTCAAAACAGCAGCGCGGGAAACCGGGGACCCCGGC < 41bp 0.622321664192294 0.906198225181046 0.8971172 0.90886635 prediction 0.567753121977503 Functional Gain - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99051713 chr7:99051717 nonsynonymous SNV 0.980 0 25 hm5C_associated_SNPs_103361 0 0 1 0 3 CPSF4 chr7:99051667 3'AG 99051667 Downstream 51bp
chr7 99051717 99051717 1 + C A rs139528752 99051713 + 99051693 99051733 41 GCAGAGTCAAAACAGCAGCGCGGGCAACCGGGGACCCCGGC GCAGAGTCAAAACAGCAGCGCGGGAAACCGGGGACCCCGGC < 41bp 0.622321664192294 0.906198225181046 0.8971172 0.90886635 prediction 0.567753121977503 Functional Gain - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99051713 chr7:99051717 nonsynonymous SNV 0.980 0 25 hm5C_associated_SNPs_103361 0 0 1 0 3 CPSF4 chr7:99051759 5'GT 99051759 Upstream 43bp
chr16 20435283 20435283 1 + T A LUSC 20435279 + 20435259 20435299 41 ATCTGACATCTTCTGGAACACGACTGACACTGGCTGGGTGA ATCTGACATCTTCTGGAACACGACAGACACTGGCTGGGTGA < 41bp 0.551520389707111 0.835394653463886 0.06734374 0.1954532 prediction 0.56774852751355 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20435279 chr16:20435283 synonymous SNV . 0 25 hm5C_associated_SNPs_103362 0 0 1 0 1 ACSM5 chr16:20435238 3'AG 20435238 Downstream 46bp
chr11 10500150 10500150 1 + C G rs369104893 10500149 + 10500129 10500169 41 AGCAAGATTGGAAGGGCCCCCCGGCAGCCAGTCCGGCCATG AGCAAGATTGGAAGGGCCCCCGGGCAGCCAGTCCGGCCATG < 41bp 0.485439157664517 0.783865378013242 0.36331928 0.89403 prediction 0.567730756026483 Functional Gain - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10500149 chr11:10500150 nonsynonymous SNV 0.753 1 22 hm5C_associated_SNPs_103363 0 0 0 0 1 AMPD3 chr11:10500073 3'AG 10500073 Downstream 78bp
chr11 70007770 70007770 1 + T C rs2186797 70007768 + 70007748 70007788 41 AGCTTTGAGGAGAGGCTGATCTTCAAGGCTTTCCTGCTGAA AGCTTTGAGGAGAGGCTGATCTCCAAGGCTTTCCTGCTGAA < 41bp 0.490200050771282 0.783856751003728 0.13022497 0.9659138 prediction 0.567713502007457 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70007768 chr11:70007770 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_103364 0 0 0 1 2 ANO1 chr11:70007728 3'AG 70007728 Downstream 43bp
chr11 70007770 70007770 1 + T C rs2186797 70007768 + 70007748 70007788 41 AGCTTTGAGGAGAGGCTGATCTTCAAGGCTTTCCTGCTGAA AGCTTTGAGGAGAGGCTGATCTCCAAGGCTTTCCTGCTGAA < 41bp 0.490200050771282 0.783856751003728 0.13022497 0.9659138 prediction 0.567713502007457 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70007768 chr11:70007770 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_103364 0 0 0 1 2 ANO1 chr11:70007839 5'GT 70007839 Upstream 70bp
chr19 53990010 53990010 1 + T G SKCM 53990008 + 53989988 53990028 41 AATTATAGGAACCTGGTCTCCCTGGGTGAGGATAACTTCCC AATTATAGGAACCTGGTCTCCCGGGGTGAGGATAACTTCCC < 41bp 0.571561469254128 0.855417505912034 0.31900823 0.92301357 prediction 0.567712073315814 Functional Gain - ZNF813 ENSG00000198346 CDS Human protein_coding chr19:53990008 chr19:53990010 nonsynonymous SNV 0.420 3 23 hm5C_associated_SNPs_103365 0 0 0 0 1 ZNF813 chr19:53990012 5'GT 53990012 Upstream 3bp
chr7 2646819 2646819 1 + C A rs200327205 2646815 + 2646795 2646835 41 AGGAGGAGATCGGCTTCAGCCACACACGGGGACGCCTCCTC AGGAGGAGATCGGCTTCAGCCACAAACGGGGACGCCTCCTC < 41bp 0.378883764530564 0.783845204521003 0.11233324 0.19442114 prediction 0.567690409042005 Functional Gain - IQCE ENSG00000106012 CDS Human protein_coding chr7:2646815 chr7:2646819 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_103367 0 0 0 0 2 IQCE chr7:2646758 3'AG 2646758 Downstream 62bp
chr7 2646819 2646819 1 + C A rs200327205 2646815 + 2646795 2646835 41 AGGAGGAGATCGGCTTCAGCCACACACGGGGACGCCTCCTC AGGAGGAGATCGGCTTCAGCCACAAACGGGGACGCCTCCTC < 41bp 0.378883764530564 0.783845204521003 0.11233324 0.19442114 prediction 0.567690409042005 Functional Gain - IQCE ENSG00000106012 CDS Human protein_coding chr7:2646815 chr7:2646819 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_103367 0 0 0 0 2 IQCE chr7:2646861 5'GT 2646861 Upstream 43bp
chr10 101715524 101715524 1 + C A UCEC 101715520 + 101715500 101715540 41 AAAGTGGCGTAAAATTTTATCTGGCTCTGTGCCGGGCCCTG AAAGTGGCGTAAAATTTTATCTGGATCTGTGCCGGGCCCTG < 41bp 0.618961128239273 0.902806136122096 0.017866373 0.06787041 prediction 0.567690015765645 Functional Gain - DNMBP ENSG00000107554 CDS Human protein_coding chr10:101715520 chr10:101715524 nonsynonymous SNV 0.148 0 25 hm5C_associated_SNPs_103368 0 0 0 0 2 DNMBP chr10:101715431 3'AG 101715431 Downstream 94bp
chr10 101715524 101715524 1 + C A UCEC 101715520 + 101715500 101715540 41 AAAGTGGCGTAAAATTTTATCTGGCTCTGTGCCGGGCCCTG AAAGTGGCGTAAAATTTTATCTGGATCTGTGCCGGGCCCTG < 41bp 0.618961128239273 0.902806136122096 0.017866373 0.06787041 prediction 0.567690015765645 Functional Gain - DNMBP ENSG00000107554 CDS Human protein_coding chr10:101715520 chr10:101715524 nonsynonymous SNV 0.148 0 25 hm5C_associated_SNPs_103368 0 0 0 0 2 DNMBP chr10:101715589 5'GT 101715589 Upstream 66bp
chr5 178450888 178450888 1 + C A rs555317229 178450884 + 178450864 178450904 41 GTGCGGTGTGGAGCTGCGCGCCCCCCGCCGAGGCGGGCCCA GTGCGGTGTGGAGCTGCGCGCCCCACGCCGAGGCGGGCCCA < 41bp 0.517401839901512 0.801221290004823 0.049245328 0.045280665 prediction 0.567638900206623 Functional Gain - ZNF879 ENSG00000234284 UTR5 Human protein_coding chr5:178450884 chr5:178450888 . . 0 25 hm5C_associated_SNPs_103370 0 0 0 0 1 ZNF879 chr5:178450905 5'GT 178450905 Upstream 18bp
chr5 180661180 180661180 1 + T G STAD 180661178 + 180661158 180661198 41 CTCCCTCCCTCCCAAGTGGACCTGACGCTGGACCCTGACAC CTCCCTCCCTCCCAAGTGGACCGGACGCTGGACCCTGACAC < 41bp 0.48730049664681 0.783818420223331 0.28511494 0.4568342 prediction 0.567636840446662 Functional Gain - TRIM41 ENSG00000146063 CDS Human protein_coding chr5:180661178 chr5:180661180 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_103371 0 0 1 0 1 TRIM41 chr5:180661174 3'AG 180661174 Downstream 7bp
chr7 135373726 135373726 1 + T G rs148576076 135373724 + 135373704 135373744 41 GCTCACTGCAGCTTTGAACTCCTGGGCTCAAGCGATCCTCT GCTCACTGCAGCTTTGAACTCCGGGGCTCAAGCGATCCTCT < 41bp 0.44915219773807 0.783789544723969 0.25769037 0.9045439 prediction 0.567579089447938 Functional Gain - SLC13A4 ENSG00000164707 intronic Human protein_coding chr7:135373724 chr7:135373726 . . 0 23 hm5C_associated_SNPs_103373 0 0 0 0 2 SLC13A4 chr7:135373652 3'AG 135373652 Downstream 75bp
chr7 135373726 135373726 1 + T G rs148576076 135373724 + 135373704 135373744 41 GCTCACTGCAGCTTTGAACTCCTGGGCTCAAGCGATCCTCT GCTCACTGCAGCTTTGAACTCCGGGGCTCAAGCGATCCTCT < 41bp 0.44915219773807 0.783789544723969 0.25769037 0.9045439 prediction 0.567579089447938 Functional Gain - SLC13A4 ENSG00000164707 intronic Human protein_coding chr7:135373724 chr7:135373726 . . 0 23 hm5C_associated_SNPs_103373 0 0 0 0 2 SLC13A4 chr7:135373776 5'GT 135373776 Upstream 51bp
chr14 69814677 69814677 1 + C G rs186654489 69814676 + 69814656 69814696 41 CTTAATGTCCTCCCCTGGATCCCCAGTCATACTGCAGATGT CTTAATGTCCTCCCCTGGATCGCCAGTCATACTGCAGATGT < 41bp 0.531311573367126 0.815071325156112 0.014965892 0.40274104 prediction 0.567519503577972 Functional Gain - GALNT16 ENSG00000100626 CDS Human protein_coding chr14:69814676 chr14:69814677 synonymous SNV . 0 22 hm5C_associated_SNPs_103374 0 0 0 0 2 GALNT16 chr14:69814594 3'AG 69814594 Downstream 84bp
chr14 69814677 69814677 1 + C G rs186654489 69814676 + 69814656 69814696 41 CTTAATGTCCTCCCCTGGATCCCCAGTCATACTGCAGATGT CTTAATGTCCTCCCCTGGATCGCCAGTCATACTGCAGATGT < 41bp 0.531311573367126 0.815071325156112 0.014965892 0.40274104 prediction 0.567519503577972 Functional Gain - GALNT16 ENSG00000100626 CDS Human protein_coding chr14:69814676 chr14:69814677 synonymous SNV . 0 22 hm5C_associated_SNPs_103374 0 0 0 0 2 GALNT16 chr14:69814719 5'GT 69814719 Upstream 43bp
chr2 138771422 138771422 1 + T A OV 138771418 + 138771398 138771438 41 GATGACCTCTGCCAGTATATCACATCAGATGACCTCACTCA GATGACCTCTGCCAGTATATCACAACAGATGACCTCACTCA < 41bp 0.544034647467411 0.82775912562364 0.29530656 0.27700207 prediction 0.567448956312457 Functional Gain - HNMT ENSG00000150540 CDS Human protein_coding chr2:138771418 chr2:138771422 nonsynonymous SNV 0.144 1 25 hm5C_associated_SNPs_103378 0 0 1 0 1 HNMT chr2:138771345 3'AG 138771345 Downstream 78bp
chr9 124064328 124064328 1 + C A HNSC 124064324 + 124064304 124064344 41 ATCTGGCGTGTGGAGAAGTTCGATCTGGTGCCCGTGCCCAC ATCTGGCGTGTGGAGAAGTTCGATATGGTGCCCGTGCCCAC < 41bp 0.396604044741419 0.783693705471211 0.19191813 0.13677645 prediction 0.567387410942422 Functional Gain - GSN ENSG00000148180 CDS Human protein_coding chr9:124064324 chr9:124064328 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_103380 0 0 1 0 1 GSN chr9:124064241 3'AG 124064241 Downstream 88bp
chr19 10370370 10370370 1 + C A rs202218040 10370366 + 10370346 10370386 41 ACCGTCGCCTTCCTGGAGGACAAGCTGCTCTGGCAGGACTC ACCGTCGCCTTCCTGGAGGACAAGATGCTCTGGCAGGACTC < 41bp 0.582729633190528 0.866409573510967 0.10284573 0.20279893 prediction 0.567359880640877 Functional Gain - MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10370366 chr19:10370370 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_103381 0 0 1 0 1 MRPL4 chr19:10370293 3'AG 10370293 Downstream 78bp
chr9 37436696 37436696 1 + C G LUAD 37436695 + 37436675 37436715 41 GGCAGTGCCACCCACAGAACCCGCAACACCATGTCCTTGTT GGCAGTGCCACCCACAGAACCGGCAACACCATGTCCTTGTT < 41bp 0.524686044334596 0.808336331450432 0.080971 0.45141408 prediction 0.567300574231671 Functional Gain - GRHPR ENSG00000137106 CDS Human protein_coding chr9:37436695 chr9:37436696 nonsynonymous SNV 0.566 4 22 hm5C_associated_SNPs_103383 0 0 1 0 1 GRHPR chr9:37436658 3'AG 37436658 Downstream 39bp
chr10 30989187 30989187 1 + C G rs189784783 30989186 + 30989166 30989206 41 GGAGAATGCAATCCGCTTATCCGCAGGTACTACTGCCCCCA GGAGAATGCAATCCGCTTATCGGCAGGTACTACTGCCCCCA < 41bp 0.499893173048328 0.783646319914268 0.6440353 0.91317797 prediction 0.567292639828537 Functional Gain - SVILP1 ENSG00000234814 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:30989186 chr10:30989187 . . 0 22 hm5C_associated_SNPs_103385 0 0 0 0 1 SVILP1 chr10:30989191 5'GT 30989191 Upstream 5bp
chr5 156890242 156890242 1 + C G GBM 156890238 + 156890218 156890258 41 CAGAACTATGGCTTCTACATCGGCCTGGGCCTGGCATTCCT CAGAACTATGGCTTCTACATCGGCGTGGGCCTGGCATTCCT < 41bp 0.50862129681211 0.792207777233821 0.7237121 0.938033 prediction 0.567172960843422 Functional Gain - NIPAL4 ENSG00000172548 CDS Human protein_coding chr5:156890238 chr5:156890242 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_103390 0 0 0 0 1 NIPAL4 chr5:156890341 5'GT 156890341 Upstream 100bp
chr1 111778760 111778760 1 + C A rs180927880 111778756 + 111778736 111778776 41 GGGGTGGCAGGACAGAGGGCCAAGCTCCTACTACAATGTGG GGGGTGGCAGGACAGAGGGCCAAGATCCTACTACAATGTGG < 41bp 0.394019661130066 0.78357816530661 0.13043162 0.17503366 prediction 0.56715633061322 Functional Gain - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111778756 chr1:111778760 nonsynonymous SNV 0.951 0 25 hm5C_associated_SNPs_103391 0 0 0 0 1 CHI3L2 chr1:111778775 5'GT 111778775 Upstream 16bp
chr3 101571988 101571988 1 + T G LIHC 101571985 + 101571965 101572005 41 AGCATGGAAGATGTTCATCTCAATGAACCCAAACAGGAGAG AGCATGGAAGATGTTCATCTCAAGGAACCCAAACAGGAGAG < 41bp 0.401264775306659 0.783570270422853 0.21478474 0.60567087 prediction 0.567140540845705 Functional Gain - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101571985 chr3:101571988 nonsynonymous SNV 0.170 1 24 hm5C_associated_SNPs_103392 0 0 1 0 2 NFKBIZ chr3:101571935 3'AG 101571935 Downstream 54bp
chr3 101571988 101571988 1 + T G LIHC 101571985 + 101571965 101572005 41 AGCATGGAAGATGTTCATCTCAATGAACCCAAACAGGAGAG AGCATGGAAGATGTTCATCTCAAGGAACCCAAACAGGAGAG < 41bp 0.401264775306659 0.783570270422853 0.21478474 0.60567087 prediction 0.567140540845705 Functional Gain - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101571985 chr3:101571988 nonsynonymous SNV 0.170 1 24 hm5C_associated_SNPs_103392 0 0 1 0 2 NFKBIZ chr3:101572078 5'GT 101572078 Upstream 91bp
chr2 28814611 28814611 1 + C A UCEC 28814607 + 28814587 28814627 41 ATGCAGGGACAGAGCCCCTTCTGCCTTGCACCCTACCTCAG ATGCAGGGACAGAGCCCCTTCTGCATTGCACCCTACCTCAG < 41bp 0.377356139002248 0.783562468863648 0.1849572 0.20086053 prediction 0.567124937727295 Functional Gain - PLB1 ENSG00000163803 CDS Human protein_coding chr2:28814607 chr2:28814611 synonymous SNV . 0 25 hm5C_associated_SNPs_103394 0 0 0 0 1 PLB1 chr2:28814627 5'GT 28814627 Upstream 17bp
chrX 65393488 65393488 1 + C G LUSC 65393487 + 65393467 65393507 41 AAGCTGATGACTCTGTTCCCCCGGGGGGCAGCCATATCTAC AAGCTGATGACTCTGTTCCCCGGGGGGGCAGCCATATCTAC < 41bp 0.545736281452823 0.829276477488915 0.8773438 0.91790974 prediction 0.567080392072183 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65393487 chrX:65393488 nonsynonymous SNV 0.773 4 22 hm5C_associated_SNPs_103395 0 0 1 0 1 HEPH chrX:65393431 3'AG 65393431 Downstream 58bp
chr17 6663737 6663737 1 + C G rs370468679 6663736 + 6663716 6663756 41 CTCCCACAGGCCAATGAGTGCCAGGAGCGCCCTGTTGAGTG CTCCCACAGGCCAATGAGTGCGAGGAGCGCCCTGTTGAGTG < 41bp 0.478571743998478 0.783536609666313 0.89209616 0.9365226 prediction 0.567073219332626 Functional Gain - XAF1 ENSG00000132530 CDS Human protein_coding chr17:6663736 chr17:6663737 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_103396 0 0 0 0 1 XAF1 chr17:6663725 3'AG 6663725 Downstream 13bp
chr2 31489094 31489094 1 + C A UCEC 31489090 + 31489070 31489110 41 AAGTTCCAGCCGCTGAAGAGCAAGCTGCTGGAGGTAGTGGA AAGTTCCAGCCGCTGAAGAGCAAGATGCTGGAGGTAGTGGA < 41bp 0.393630621823259 0.783506679287151 0.6780138 0.79967415 prediction 0.567013358574302 Functional Gain - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489090 chr2:31489094 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_103400 0 0 0 0 1 EHD3 chr2:31489043 3'AG 31489043 Downstream 52bp
chr9 133553963 133553963 1 + C A LGG 133553959 + 133553939 133553979 41 GCTGGTGTGGTACGGAAACTCACACAACACCTTCCTGGGGA GCTGGTGTGGTACGGAAACTCACAAAACACCTTCCTGGGGA < 41bp 0.628737496431152 0.912240653820275 0.30479681 0.42584532 prediction 0.567006314778246 Functional Gain - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133553959 chr9:133553963 nonsynonymous SNV 0.992 2 25 hm5C_associated_SNPs_103401 0 0 0 0 2 PRDM12 chr9:133553916 3'AG 133553916 Downstream 48bp
chr9 133553963 133553963 1 + C A LGG 133553959 + 133553939 133553979 41 GCTGGTGTGGTACGGAAACTCACACAACACCTTCCTGGGGA GCTGGTGTGGTACGGAAACTCACAAAACACCTTCCTGGGGA < 41bp 0.628737496431152 0.912240653820275 0.30479681 0.42584532 prediction 0.567006314778246 Functional Gain - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133553959 chr9:133553963 nonsynonymous SNV 0.992 2 25 hm5C_associated_SNPs_103401 0 0 0 0 2 PRDM12 chr9:133554027 5'GT 133554027 Upstream 65bp
chr6 159052925 159052925 1 + C G rs189102191 159052924 + 159052904 159052944 41 AGTCAGATAGTGACTGAGCCCCGGCCAGCCCAGCGAGGCGA AGTCAGATAGTGACTGAGCCCGGGCCAGCCCAGCGAGGCGA < 41bp 0.52925979028692 0.81276150719307 0.290729 0.5867171 prediction 0.567003433812302 Functional Gain - TMEM181 ENSG00000146433 UTR3 Human protein_coding chr6:159052924 chr6:159052925 . . 0 22 hm5C_associated_SNPs_103402 0 0 1 0 1 TMEM181 chr6:159052842 3'AG 159052842 Downstream 84bp
chr11 7060966 7060966 1 + C G rs144648828 7060965 + 7060945 7060985 41 GGTCGGCCCAGACTATAGGACCAGATGATGCCAAGGCTGGA GGTCGGCCCAGACTATAGGACGAGATGATGCCAAGGCTGGA < 41bp 0.538423861040542 0.821923157001558 0.098219484 0.27446216 prediction 0.566998591922032 Functional Gain - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7060965 chr11:7060966 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_103403 0 0 0 0 1 NLRP14 chr11:7061016 5'GT 7061016 Upstream 51bp
chr19 579519 579519 1 + C A rs55713331 579515 + 579495 579535 41 TGCAGCCGGCACAGTCTTCACTACCGTAGAAGACCTTGGCT TGCAGCCGGCACAGTCTTCACTACAGTAGAAGACCTTGGCT < 41bp 0.387895185904734 0.783492762119098 0.21676657 0.87571716 prediction 0.566985524238196 Functional Gain - BSG ENSG00000172270 CDS Human protein_coding chr19:579515 chr19:579519 synonymous SNV . 0 25 hm5C_associated_SNPs_103405 0 0 1 0 1 BSG chr19:579500 3'AG 579500 Downstream 20bp
chr15 81598322 81598322 1 + T G PRAD 81598320 + 81598300 81598340 41 AAGGGCAATGAGGTTCTTTCCATCAACGGCAAGTCTCTCAA AAGGGCAATGAGGTTCTTTCCAGCAACGGCAAGTCTCTCAA < 41bp 0.551179133367825 0.834629349397788 0.2707388 0.44030267 prediction 0.566900432059927 Functional Gain - IL16 ENSG00000172349 CDS Human protein_coding chr15:81598320 chr15:81598322 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_103409 0 0 0 0 1 IL16 chr15:81598249 3'AG 81598249 Downstream 74bp
chr20 17446118 17446118 1 + T A LUSC 17446114 + 17446094 17446134 41 TGGCTACGGGGTCCTTGATGCAGGTGCCATGGTGAAAATGG TGGCTACGGGGTCCTTGATGCAGGAGCCATGGTGAAAATGG < 41bp 0.48004181996445 0.783449943065952 0.9110884 0.9093461 prediction 0.566899886131904 Functional Gain - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17446114 chr20:17446118 synonymous SNV . 0 25 hm5C_associated_SNPs_103410 0 0 0 0 1 PCSK2 chr20:17446198 5'GT 17446198 Upstream 81bp
chr9 132636948 132636948 1 + C A UCEC 132636944 + 132636924 132636964 41 TCCTTCCCCCTCGAGGGGCTCGACCTGCGCCCCTTCCTTGC TCCTTCCCCCTCGAGGGGCTCGACATGCGCCCCTTCCTTGC < 41bp 0.374474926710771 0.783445896714216 0.019053161 0.11085078 prediction 0.566891793428433 Functional Gain - USP20 ENSG00000136878 CDS Human protein_coding chr9:132636944 chr9:132636948 nonsynonymous SNV 0.459 1 25 hm5C_associated_SNPs_103411 0 0 1 0 2 USP20 chr9:132636855 3'AG 132636855 Downstream 94bp
chr9 132636948 132636948 1 + C A UCEC 132636944 + 132636924 132636964 41 TCCTTCCCCCTCGAGGGGCTCGACCTGCGCCCCTTCCTTGC TCCTTCCCCCTCGAGGGGCTCGACATGCGCCCCTTCCTTGC < 41bp 0.374474926710771 0.783445896714216 0.019053161 0.11085078 prediction 0.566891793428433 Functional Gain - USP20 ENSG00000136878 CDS Human protein_coding chr9:132636944 chr9:132636948 nonsynonymous SNV 0.459 1 25 hm5C_associated_SNPs_103411 0 0 1 0 2 USP20 chr9:132637035 5'GT 132637035 Upstream 88bp
chr17 40717731 40717731 1 + C G rs201779417 40717730 + 40717710 40717750 41 AGTGAAGCCGCGGCTCAAAGCCGGCTGCAGAGCCAGATGAG AGTGAAGCCGCGGCTCAAAGCGGGCTGCAGAGCCAGATGAG < 41bp 0.531982461226528 0.815422296331512 0.85439676 0.9017 prediction 0.566879670209967 Functional Gain - COASY ENSG00000068120 CDS Human protein_coding chr17:40717730 chr17:40717731 nonsynonymous SNV 0.976 4 22 hm5C_associated_SNPs_103412 0 0 1 0 2 COASY chr17:40717677 3'AG 40717677 Downstream 55bp
chr17 40717731 40717731 1 + C G rs201779417 40717730 + 40717710 40717750 41 AGTGAAGCCGCGGCTCAAAGCCGGCTGCAGAGCCAGATGAG AGTGAAGCCGCGGCTCAAAGCGGGCTGCAGAGCCAGATGAG < 41bp 0.531982461226528 0.815422296331512 0.85439676 0.9017 prediction 0.566879670209967 Functional Gain - COASY ENSG00000068120 CDS Human protein_coding chr17:40717730 chr17:40717731 nonsynonymous SNV 0.976 4 22 hm5C_associated_SNPs_103412 0 0 1 0 2 COASY chr17:40717823 5'GT 40717823 Upstream 93bp
chr6 168440832 168440832 1 + T A rs184677574 168440828 + 168440808 168440848 41 GCACCCCACCCTGGTGCACGCGGATTCCTCCAGGTCTCACC GCACCCCACCCTGGTGCACGCGGAATCCTCCAGGTCTCACC < 41bp 0.541404520183946 0.824805088279818 0.50677717 0.87652403 prediction 0.566801136191746 Functional Gain - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168440828 chr6:168440832 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_103417 0 0 0 0 2 KIF25 chr6:168440745 3'AG 168440745 Downstream 88bp
chr6 168440832 168440832 1 + T A rs184677574 168440828 + 168440808 168440848 41 GCACCCCACCCTGGTGCACGCGGATTCCTCCAGGTCTCACC GCACCCCACCCTGGTGCACGCGGAATCCTCCAGGTCTCACC < 41bp 0.541404520183946 0.824805088279818 0.50677717 0.87652403 prediction 0.566801136191746 Functional Gain - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168440828 chr6:168440832 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_103417 0 0 0 0 2 KIF25 chr6:168440896 5'GT 168440896 Upstream 65bp
chr19 33642110 33642110 1 + T A UCEC 33642106 + 33642086 33642126 41 GATCATCACACAAGGTCCATCACGTCATGCTGCTTTGACCC GATCATCACACAAGGTCCATCACGACATGCTGCTTTGACCC < 41bp 0.554373530968243 0.837770378547696 0.064389974 0.16187742 prediction 0.566793695158906 Functional Gain - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33642106 chr19:33642110 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_103418 0 0 0 0 1 WDR88 chr19:33642087 3'AG 33642087 Downstream 24bp
chr12 104149122 104149122 1 + C A LUAD 104149118 + 104149098 104149138 41 TCAGCAGGCTGGCTGGAGACCGGGCGGGTTGCCTACCCCAC TCAGCAGGCTGGCTGGAGACCGGGAGGGTTGCCTACCCCAC < 41bp 0.590831184612983 0.874196233876803 0.91855097 0.9246011 prediction 0.566730098527641 Functional Gain - STAB2 ENSG00000136011 CDS Human protein_coding chr12:104149118 chr12:104149122 synonymous SNV . 0 25 hm5C_associated_SNPs_103420 0 0 0 0 1 STAB2 chr12:104149080 3'AG 104149080 Downstream 43bp
chr7 43351380 43351380 1 + T A LUSC 43351376 + 43351356 43351396 41 CCACAGAATCTGTACCAGAACAGGTTTTTAGGCCTGGCCGC CCACAGAATCTGTACCAGAACAGGATTTTAGGCCTGGCCGC < 41bp 0.502826352696844 0.786134282700049 0.25279778 0.638811 prediction 0.566615860006409 Functional Gain - HECW1 ENSG00000002746 CDS Human protein_coding chr7:43351376 chr7:43351380 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_103422 0 0 0 0 1 HECW1 chr7:43351362 3'AG 43351362 Downstream 19bp
chr8 104388131 104388131 1 + T A LIHC 104388127 + 104388107 104388147 41 TTTGAGGAGTCCTGGACACCCAACTACAAGCAGTGTTCATG TTTGAGGAGTCCTGGACACCCAACAACAAGCAGTGTTCATG < 41bp 0.549444462471202 0.832746526886584 0.23830304 0.23132297 prediction 0.566604128830763 Functional Gain - CTHRC1 ENSG00000164932 CDS Human protein_coding chr8:104388127 chr8:104388131 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_103423 0 0 0 0 1 CTHRC1 chr8:104388187 5'GT 104388187 Upstream 57bp
chr2 242128114 242128114 1 + C G rs148609049 242128113 + 242128093 242128133 41 GTGAGGACGGGACTCTACTGCCGAGACCAGGCTCACGCTGA GTGAGGACGGGACTCTACTGCGGAGACCAGGCTCACGCTGA < 41bp 0.496863016732374 0.783293843438493 0.37714323 0.8929224 prediction 0.566587686876985 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242128113 chr2:242128114 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_103424 0 0 0 0 1 ANO7 chr2:242128181 5'GT 242128181 Upstream 68bp
chr20 31624312 31624312 1 + C G rs113787573 31624311 + 31624291 31624331 41 TCTGATGTCCGCACCAGCCACCACAGCCAGCTACATCCAAC TCTGATGTCCGCACCAGCCACGACAGCCAGCTACATCCAAC < 41bp 0.473327142725622 0.783270568739115 0.08697885 0.087451845 prediction 0.566541137478231 Functional Gain - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31624311 chr20:31624312 synonymous SNV . 0 22 hm5C_associated_SNPs_103427 0 0 0 0 1 BPIFB6 chr20:31624251 3'AG 31624251 Downstream 62bp
chr16 18584369 18584369 1 + T G UCEC 18584367 + 18584347 18584387 41 ACCTCCGGATGTTCCCCACTCTTCAAAGCCAAGATGGTAGC ACCTCCGGATGTTCCCCACTCTGCAAAGCCAAGATGGTAGC < 41bp 0.520778623361484 0.804042148309027 0.77283996 0.7717271 prediction 0.566527049895087 Functional Gain - ABCC6P1 ENSG00000256340 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:18584367 chr16:18584369 . . 0 23 hm5C_associated_SNPs_103428 0 0 1 0 1 ABCC6P1 chr16:18584382 5'GT 18584382 Upstream 14bp
chr2 95941749 95941749 1 + T G SKCM 95941746 + 95941726 95941766 41 CTCTACCTGCTGCTGGTGCCCACTGCCGGGCTTTGCTTCTG CTCTACCTGCTGCTGGTGCCCACGGCCGGGCTTTGCTTCTG < 41bp 0.618213122989802 0.901420440294305 0.086936325 0.46290585 prediction 0.566414634609006 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95941746 chr2:95941749 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_103436 0 0 0 0 1 PROM2 chr2:95941678 3'AG 95941678 Downstream 72bp
chr22 25010819 25010819 1 + C G LUAD 25010818 + 25010798 25010838 41 TGTGTGGGGCTCATGAATGCCCACAGCATGGGCATCGGGGG TGTGTGGGGCTCATGAATGCCGACAGCATGGGCATCGGGGG < 41bp 0.49203885507323 0.783197439535014 0.08137807 0.1720533 prediction 0.566394879070028 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25010818 chr22:25010819 nonsynonymous SNV 0.963 2 22 hm5C_associated_SNPs_103438 0 0 0 0 2 GGT1 chr22:25010743 3'AG 25010743 Downstream 77bp
chr22 25010819 25010819 1 + C G LUAD 25010818 + 25010798 25010838 41 TGTGTGGGGCTCATGAATGCCCACAGCATGGGCATCGGGGG TGTGTGGGGCTCATGAATGCCGACAGCATGGGCATCGGGGG < 41bp 0.49203885507323 0.783197439535014 0.08137807 0.1720533 prediction 0.566394879070028 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25010818 chr22:25010819 nonsynonymous SNV 0.963 2 22 hm5C_associated_SNPs_103438 0 0 0 0 2 GGT1 chr22:25010873 5'GT 25010873 Upstream 55bp
chr8 67109033 67109033 1 + C A rs61742246 67109029 + 67109009 67109049 41 TCACAGCACCCTTTCTCCTCCTAGCCTAGGATCCAGTGCCT TCACAGCACCCTTTCTCCTCCTAGACTAGGATCCAGTGCCT < 41bp 0.437124572191769 0.783164420267629 0.19099513 0.18235078 prediction 0.566328840535257 Functional Gain - LINC00967 ENSG00000253138 ncRNA_exonic Human lincRNA chr8:67109029 chr8:67109033 . . 0 25 hm5C_associated_SNPs_103440 0 0 0 0 1 LINC00967 chr8:67108960 3'AG 67108960 Downstream 74bp
chr1 173837516 173837516 1 + C A rs188282970 173837512 + 173837492 173837532 41 TCACTTCCGGGACGGTGTTCCGGCCCATTCCGGCCCATTTC TCACTTCCGGGACGGTGTTCCGGCACATTCCGGCCCATTTC < 41bp 0.587673311747082 0.870799399321952 0.9006723 0.90243185 prediction 0.566252175149739 Functional Gain - ZBTB37 ENSG00000234741 ncRNA_intronic Human processed_transcript chr1:173837512 chr1:173837516 . . 0 25 hm5C_associated_SNPs_103442 0 0 1 0 1 ZBTB37 chr1:173837543 5'GT 173837543 Upstream 28bp
chr1 161645092 161645092 1 + C A LUAD 161645088 + 161645068 161645108 41 GCAGGGAAATGGGAGAGACCCTCCCTGAGAAACCAGGTGAG GCAGGGAAATGGGAGAGACCCTCCATGAGAAACCAGGTGAG < 41bp 0.638813674289549 0.921916519190675 0.36516297 0.94184947 prediction 0.566205689802252 Functional Gain - FCGR2B ENSG00000072694 CDS Human protein_coding chr1:161645088 chr1:161645092 nonsynonymous SNV 0.025 3 25 hm5C_associated_SNPs_103444 0 0 1 0 2 FCGR2B chr1:161645047 3'AG 161645047 Downstream 46bp
chr1 161645092 161645092 1 + C A LUAD 161645088 + 161645068 161645108 41 GCAGGGAAATGGGAGAGACCCTCCCTGAGAAACCAGGTGAG GCAGGGAAATGGGAGAGACCCTCCATGAGAAACCAGGTGAG < 41bp 0.638813674289549 0.921916519190675 0.36516297 0.94184947 prediction 0.566205689802252 Functional Gain - FCGR2B ENSG00000072694 CDS Human protein_coding chr1:161645088 chr1:161645092 nonsynonymous SNV 0.025 3 25 hm5C_associated_SNPs_103444 0 0 1 0 2 FCGR2B chr1:161645103 5'GT 161645103 Upstream 12bp
chr1 28880177 28880177 1 + T G UCEC 28880175 + 28880155 28880195 41 GAACCCTACATGGATGAGAACTTCATCTCCAGAGCCTTTGC GAACCCTACATGGATGAGAACTGCATCTCCAGAGCCTTTGC < 41bp 0.454213026613999 0.783086944199613 0.04215443 0.09182978 prediction 0.566173888399227 Functional Gain - TRNAU1AP ENSG00000180098 CDS Human protein_coding chr1:28880175 chr1:28880177 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_103445 0 0 1 0 2 TRNAU1AP chr1:28880152 3'AG 28880152 Downstream 26bp
chr1 28880177 28880177 1 + T G UCEC 28880175 + 28880155 28880195 41 GAACCCTACATGGATGAGAACTTCATCTCCAGAGCCTTTGC GAACCCTACATGGATGAGAACTGCATCTCCAGAGCCTTTGC < 41bp 0.454213026613999 0.783086944199613 0.04215443 0.09182978 prediction 0.566173888399227 Functional Gain - TRNAU1AP ENSG00000180098 CDS Human protein_coding chr1:28880175 chr1:28880177 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_103445 0 0 1 0 2 TRNAU1AP chr1:28880249 5'GT 28880249 Upstream 73bp
chr15 25448252 25448252 1 + C A rs56991412 25448248 + 25448228 25448268 41 CCACATCAGTGTCCGTCATCCCGGCGTCCAGCCCCTGGTGT CCACATCAGTGTCCGTCATCCCGGAGTCCAGCCCCTGGTGT < 41bp 0.463249756697583 0.783078866298765 0.9125993 0.9125567 prediction 0.56615773259753 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25448248 chr15:25448252 . . 0 25 hm5C_associated_SNPs_103447 0 0 0 0 2 SNHG14 chr15:25448187 3'AG 25448187 Downstream 66bp
chr15 25448252 25448252 1 + C A rs56991412 25448248 + 25448228 25448268 41 CCACATCAGTGTCCGTCATCCCGGCGTCCAGCCCCTGGTGT CCACATCAGTGTCCGTCATCCCGGAGTCCAGCCCCTGGTGT < 41bp 0.463249756697583 0.783078866298765 0.9125993 0.9125567 prediction 0.56615773259753 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25448248 chr15:25448252 . . 0 25 hm5C_associated_SNPs_103447 0 0 0 0 2 SNHG14 chr15:25448317 5'GT 25448317 Upstream 66bp
chr6 36976674 36976674 1 + C A LUAD 36976670 + 36976650 36976690 41 GTGCATCACCGCCCTGAGTGCAGGCCTCCCGAGTCCCCAGG GTGCATCACCGCCCTGAGTGCAGGACTCCCGAGTCCCCAGG < 41bp 0.599199654971328 0.882270988619091 0.2921224 0.36784688 prediction 0.566142667295526 Functional Gain - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36976670 chr6:36976674 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_103449 0 0 0 0 1 FGD2 chr6:36976610 3'AG 36976610 Downstream 65bp
chr17 21217477 21217477 1 + T A LUAD 21217473 + 21217453 21217493 41 CCCCAGGAGCACCCCTTCTTCACCTTGCACAAAACCAAGAA CCCCAGGAGCACCCCTTCTTCACCATGCACAAAACCAAGAA < 41bp 0.565438000115264 0.848490660060744 0.03849125 0.05785024 prediction 0.566105319890962 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21217473 chr17:21217477 nonsynonymous SNV 0.989 0 25 hm5C_associated_SNPs_103452 0 0 0 0 1 MAP2K3 chr17:21217459 3'AG 21217459 Downstream 19bp
chr10 115439087 115439087 1 + C G rs549850003 115439086 + 115439066 115439106 41 CAGTGGATGCCACAGCGGGCCCGAAGCGGATCAGCCTTGTG CAGTGGATGCCACAGCGGGCCGGAAGCGGATCAGCCTTGTG < 41bp 0.512942886196542 0.795967729109089 0.10926229 0.5740436 prediction 0.566049685825095 Functional Gain - CASP7 ENSG00000165806 UTR5 Human protein_coding chr10:115439086 chr10:115439087 . . 0 22 hm5C_associated_SNPs_103453 0 0 0 0 1 CASP7 chr10:115439108 5'GT 115439108 Upstream 22bp
chr12 121437355 121437355 1 + C A UCEC 121437351 + 121437331 121437371 41 ACGCCGGCATCTCAGGCCACCACCCTCCACGTCCCCAGCCA ACGCCGGCATCTCAGGCCACCACCATCCACGTCCCCAGCCA < 41bp 0.369106160422856 0.783017107104986 0.013621658 0.03520626 prediction 0.566034214209971 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121437351 chr12:121437355 nonsynonymous SNV 0.952 1 25 hm5C_associated_SNPs_103454 0 0 0 0 3 HNF1A chr12:121437265 3'AG 121437265 Downstream 91bp
chr12 121437355 121437355 1 + C A UCEC 121437351 + 121437331 121437371 41 ACGCCGGCATCTCAGGCCACCACCCTCCACGTCCCCAGCCA ACGCCGGCATCTCAGGCCACCACCATCCACGTCCCCAGCCA < 41bp 0.369106160422856 0.783017107104986 0.013621658 0.03520626 prediction 0.566034214209971 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121437351 chr12:121437355 nonsynonymous SNV 0.952 1 25 hm5C_associated_SNPs_103454 0 0 0 0 3 HNF1A chr12:121437286 3'AG 121437286 Downstream 70bp
chr12 121437355 121437355 1 + C A UCEC 121437351 + 121437331 121437371 41 ACGCCGGCATCTCAGGCCACCACCCTCCACGTCCCCAGCCA ACGCCGGCATCTCAGGCCACCACCATCCACGTCCCCAGCCA < 41bp 0.369106160422856 0.783017107104986 0.013621658 0.03520626 prediction 0.566034214209971 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121437351 chr12:121437355 nonsynonymous SNV 0.952 1 25 hm5C_associated_SNPs_103454 0 0 0 0 3 HNF1A chr12:121437430 5'GT 121437430 Upstream 76bp
chr11 14276139 14276139 1 + T G UCEC 14276137 + 14276117 14276157 41 CATTTAATGTCCTTCCTGACCATGATGGGCCCTAGTCCCGA CATTTAATGTCCTTCCTGACCAGGATGGGCCCTAGTCCCGA < 41bp 0.56613153486575 0.849147196085557 0.16825655 0.86530614 prediction 0.566031322439614 Functional Gain - SPON1 ENSG00000152268 ncRNA_exonic Human other chr11:14276137 chr11:14276139 . 1.000 2 23 hm5C_associated_SNPs_103456 0 0 1 0 1 SPON1 chr11:14276074 3'AG 14276074 Downstream 66bp
chr1 21889632 21889632 1 + C A STAD 21889628 + 21889608 21889648 41 CAACACCAATGCCCAGGTCCCTGACAGTGCCGGCACCGCCA CAACACCAATGCCCAGGTCCCTGAAAGTGCCGGCACCGCCA < 41bp 0.372211216291537 0.782985511380023 0.13528982 0.25266886 prediction 0.565971022760046 Functional Gain - ALPL ENSG00000162551 CDS Human protein_coding chr1:21889628 chr1:21889632 nonsynonymous SNV 0.947 4 25 hm5C_associated_SNPs_103458 0 0 0 0 1 ALPL chr1:21889603 3'AG 21889603 Downstream 30bp
chr9 131898801 131898801 1 + C A rs17508881 131898797 + 131898777 131898817 41 GAAAACATACAGGATGGAGCCAGCCGGCAGCCAGGGAGTGT GAAAACATACAGGATGGAGCCAGCAGGCAGCCAGGGAGTGT < 41bp 0.388235852504538 0.782984488074702 0.23931918 0.2557401 prediction 0.565968976149405 Functional Gain - PTPA ENSG00000119383 CDS Human protein_coding chr9:131898797 chr9:131898801 synonymous SNV . 0 25 hm5C_associated_SNPs_103459 0 0 1 0 2 PTPA chr9:131898750 3'AG 131898750 Downstream 52bp
chr9 131898801 131898801 1 + C A rs17508881 131898797 + 131898777 131898817 41 GAAAACATACAGGATGGAGCCAGCCGGCAGCCAGGGAGTGT GAAAACATACAGGATGGAGCCAGCAGGCAGCCAGGGAGTGT < 41bp 0.388235852504538 0.782984488074702 0.23931918 0.2557401 prediction 0.565968976149405 Functional Gain - PTPA ENSG00000119383 CDS Human protein_coding chr9:131898797 chr9:131898801 synonymous SNV . 0 25 hm5C_associated_SNPs_103459 0 0 1 0 2 PTPA chr9:131898874 5'GT 131898874 Upstream 74bp
chr15 40558120 40558120 1 + C A OV 40558116 + 40558096 40558136 41 CAACGACATCCAGAAGTTGTCAGTCATCAGCTCCAACACCC CAACGACATCCAGAAGTTGTCAGTAATCAGCTCCAACACCC < 41bp 0.38668887640295 0.782957093647622 0.28794855 0.21956146 prediction 0.565914187295244 Functional Gain - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40558116 chr15:40558120 synonymous SNV . 0 25 hm5C_associated_SNPs_103462 0 0 0 0 1 BUB1B-PAK6;PAK6 chr15:40558043 3'AG 40558043 Downstream 78bp
chr1 171765655 171765655 1 + T G LAML 171765653 + 171765633 171765673 41 CTCAACCTTGTGTGCCGAGACTTGGGGCTAAAAGACTCAGT CTCAACCTTGTGTGCCGAGACTGGGGGCTAAAAGACTCAGT < 41bp 0.463287820969455 0.782948327625538 0.25642538 0.56031835 prediction 0.565896655251076 Functional Gain - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171765653 chr1:171765655 nonsynonymous SNV 0.719 1 23 hm5C_associated_SNPs_103463 0 0 1 0 1 METTL13 chr1:171765622 3'AG 171765622 Downstream 34bp
chr19 5119802 5119802 1 + C G rs544905618 5119801 + 5119781 5119821 41 GGCTGGGCCGGAGGTTGACCCCGAGGAGGAGGAGGAGGAGC GGCTGGGCCGGAGGTTGACCCGGAGGAGGAGGAGGAGGAGC < 41bp 0.537306316071593 0.820253520229505 0.31162977 0.886583 prediction 0.565894408315824 Functional Gain - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5119801 chr19:5119802 synonymous SNV . 0 22 hm5C_associated_SNPs_103464 0 0 1 0 1 KDM4B chr19:5119863 5'GT 5119863 Upstream 62bp
chr19 3736275 3736275 1 + C G SKCM 3736274 + 3736254 3736294 41 TCCGGGGTGCAGGCGGGCAGCCCGGCCGACGGGCAGGGCAT TCCGGGGTGCAGGCGGGCAGCGCGGCCGACGGGCAGGGCAT < 41bp 0.528035808222609 0.810980568064772 0.8297372 0.88038266 prediction 0.565889519684326 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3736274 chr19:3736275 nonsynonymous SNV 0.907 2 22 hm5C_associated_SNPs_103465 0 0 1 0 1 TJP3 chr19:3736319 5'GT 3736319 Upstream 45bp
chr15 100246981 100246981 1 + C G rs3730283 100246980 + 100246960 100247000 41 AGCCACTCAACCTCTTGCTACCCCAGTCGTGTCTGTGACAA AGCCACTCAACCTCTTGCTACGCCAGTCGTGTCTGTGACAA < 41bp 0.485631507962102 0.782907405791117 0.013029933 0.035731226 prediction 0.565814811582234 Functional Gain - MEF2A ENSG00000068305 CDS Human protein_coding chr15:100246980 chr15:100246981 synonymous SNV . 0 22 hm5C_associated_SNPs_103469 0 0 1 0 2 MEF2A chr15:100246934 3'AG 100246934 Downstream 48bp
chr15 100246981 100246981 1 + C G rs3730283 100246980 + 100246960 100247000 41 AGCCACTCAACCTCTTGCTACCCCAGTCGTGTCTGTGACAA AGCCACTCAACCTCTTGCTACGCCAGTCGTGTCTGTGACAA < 41bp 0.485631507962102 0.782907405791117 0.013029933 0.035731226 prediction 0.565814811582234 Functional Gain - MEF2A ENSG00000068305 CDS Human protein_coding chr15:100246980 chr15:100246981 synonymous SNV . 0 22 hm5C_associated_SNPs_103469 0 0 1 0 2 MEF2A chr15:100247060 5'GT 100247060 Upstream 80bp
chr7 30825451 30825451 1 + C G rs111491161 30825450 + 30825430 30825470 41 GTAAGCCCATGCAGACGGTCCCGGGTGAAACTCCTGTGTTG GTAAGCCCATGCAGACGGTCCGGGGTGAAACTCCTGTGTTG < 41bp 0.539784422465742 0.822680903852356 0.89875966 0.9032693 prediction 0.565792962773227 Functional Gain - MINDY4 ENSG00000106125 CDS Human protein_coding chr7:30825450 chr7:30825451 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_103471 0 0 0 0 1 MINDY4 chr7:30825365 3'AG 30825365 Downstream 87bp
chr16 816775 816775 1 + C G KIRC 816774 + 816754 816794 41 GTACCTGTGCTCCCTCAGCCCCGAGGAGCTGAGCTCCGTGC GTACCTGTGCTCCCTCAGCCCGGAGGAGCTGAGCTCCGTGC < 41bp 0.537021290737563 0.819900327884041 0.12100977 0.7196326 prediction 0.565758074292957 Functional Gain - MSLN ENSG00000102854 CDS Human protein_coding chr16:816774 chr16:816775 synonymous SNV . 0 22 hm5C_associated_SNPs_103472 0 0 0 0 1 MSLN chr16:816810 5'GT 816810 Upstream 36bp
chr2 219746963 219746963 1 + C G COAD 219746962 + 219746942 219746982 41 ACACAGTGTGCCTAACATTGCCAGGCCTGAGCCGGCGGCAG ACACAGTGTGCCTAACATTGCGAGGCCTGAGCCGGCGGCAG < 41bp 0.537085176832755 0.819958556702088 0.85274607 0.9004521 prediction 0.565746759738665 Functional Gain - WNT10A ENSG00000135925 CDS Human protein_coding chr2:219746962 chr2:219746963 nonsynonymous SNV 0.990 2 22 hm5C_associated_SNPs_103474 0 0 0 0 1 WNT10A chr2:219746883 3'AG 219746883 Downstream 81bp
chr16 58537789 58537789 1 + C A SKCM 58537785 + 58537765 58537805 41 AACCGCCCAGCCATCCTCACCTACCATGATGTGGGCCTCAA AACCGCCCAGCCATCCTCACCTACAATGATGTGGGCCTCAA < 41bp 0.359380097468113 0.782866958646413 0.050350904 0.9124166 prediction 0.565733917292826 Functional Gain - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58537785 chr16:58537789 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_103475 0 0 0 0 3 NDRG4 chr16:58537702 3'AG 58537702 Downstream 88bp
chr16 58537789 58537789 1 + C A SKCM 58537785 + 58537765 58537805 41 AACCGCCCAGCCATCCTCACCTACCATGATGTGGGCCTCAA AACCGCCCAGCCATCCTCACCTACAATGATGTGGGCCTCAA < 41bp 0.359380097468113 0.782866958646413 0.050350904 0.9124166 prediction 0.565733917292826 Functional Gain - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58537785 chr16:58537789 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_103475 0 0 0 0 3 NDRG4 chr16:58537807 5'GT 58537807 Upstream 19bp
chr16 58537789 58537789 1 + C A SKCM 58537785 + 58537765 58537805 41 AACCGCCCAGCCATCCTCACCTACCATGATGTGGGCCTCAA AACCGCCCAGCCATCCTCACCTACAATGATGTGGGCCTCAA < 41bp 0.359380097468113 0.782866958646413 0.050350904 0.9124166 prediction 0.565733917292826 Functional Gain - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58537785 chr16:58537789 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_103475 0 0 0 0 3 NDRG4 chr16:58537861 5'GT 58537861 Upstream 73bp
chr11 10472521 10472521 1 + C A rs555347075 10472517 + 10472497 10472537 41 GCAGCCCCGCTCCGCTCTGCCCAGCGCGTCCCCTTTGCTCC GCAGCCCCGCTCCGCTCTGCCCAGAGCGTCCCCTTTGCTCC < 41bp 0.461500970628649 0.782832133656666 0.046764463 0.0790219 prediction 0.565664267313333 Functional Gain - AMPD3 ENSG00000133805 UTR5 Human protein_coding chr11:10472517 chr11:10472521 . . 0 25 hm5C_associated_SNPs_103479 0 0 0 0 1 AMPD3 chr11:10472590 5'GT 10472590 Upstream 70bp
chr19 39909596 39909596 1 + C A UCEC 39909592 + 39909572 39909612 41 GAGAAGAGGCTGTGGATTCACTGTCTCCAGCGCCTCTTCTT GAGAAGAGGCTGTGGATTCACTGTATCCAGCGCCTCTTCTT < 41bp 0.366890173081597 0.782823082853905 0.05931306 0.09358704 prediction 0.56564616570781 Functional Gain - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39909592 chr19:39909596 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_103483 0 0 0 0 2 PLEKHG2 chr19:39909557 3'AG 39909557 Downstream 40bp
chr19 39909596 39909596 1 + C A UCEC 39909592 + 39909572 39909612 41 GAGAAGAGGCTGTGGATTCACTGTCTCCAGCGCCTCTTCTT GAGAAGAGGCTGTGGATTCACTGTATCCAGCGCCTCTTCTT < 41bp 0.366890173081597 0.782823082853905 0.05931306 0.09358704 prediction 0.56564616570781 Functional Gain - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39909592 chr19:39909596 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_103483 0 0 0 0 2 PLEKHG2 chr19:39909643 5'GT 39909643 Upstream 48bp
chr20 24646033 24646033 1 + C A rs146301956 24646029 + 24646009 24646049 41 TTGCACCAGGCCAGCACCAGCTCCCGGCGGGCCCTATTCCT TTGCACCAGGCCAGCACCAGCTCCAGGCGGGCCCTATTCCT < 41bp 0.37059954761335 0.782809296542629 0.16687343 0.8790499 prediction 0.565618593085258 Functional Gain - SYNDIG1 ENSG00000101463 CDS Human protein_coding chr20:24646029 chr20:24646033 synonymous SNV . 0 25 hm5C_associated_SNPs_103487 0 0 0 0 1 SYNDIG1 chr20:24645982 3'AG 24645982 Downstream 52bp
chr3 44938252 44938252 1 + C A UCEC 44938248 + 44938228 44938268 41 ATTTCCCTGCTGACTGAGAGCTCCCTCAAGCCCACAGATAG ATTTCCCTGCTGACTGAGAGCTCCATCAAGCCCACAGATAG < 41bp 0.35180992134237 0.782755639829131 0.03345707 0.804411 prediction 0.565511279658263 Functional Gain - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44938248 chr3:44938252 nonsynonymous SNV 0.005 2 25 hm5C_associated_SNPs_103491 0 0 0 0 2 TGM4 chr3:44938201 3'AG 44938201 Downstream 52bp
chr3 44938252 44938252 1 + C A UCEC 44938248 + 44938228 44938268 41 ATTTCCCTGCTGACTGAGAGCTCCCTCAAGCCCACAGATAG ATTTCCCTGCTGACTGAGAGCTCCATCAAGCCCACAGATAG < 41bp 0.35180992134237 0.782755639829131 0.03345707 0.804411 prediction 0.565511279658263 Functional Gain - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44938248 chr3:44938252 nonsynonymous SNV 0.005 2 25 hm5C_associated_SNPs_103491 0 0 0 0 2 TGM4 chr3:44938308 5'GT 44938308 Upstream 57bp
chr2 3652013 3652013 1 + C A LUSC 3652009 + 3651989 3652029 41 TGCCATCTGGACATCCTCAGCCGGCTGGCGATGACGCCTGC TGCCATCTGGACATCCTCAGCCGGATGGCGATGACGCCTGC < 41bp 0.561660471816779 0.844401711450424 0.64191484 0.7068003 prediction 0.565482479267289 Functional Gain - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3652009 chr2:3652013 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_103494 0 0 0 0 1 COLEC11 chr2:3652060 5'GT 3652060 Upstream 48bp
chrX 48340805 48340805 1 + C A LUAD 48340801 + 48340781 48340821 41 TGTTCCTAAGACCCAGATTTCAACCAGCTGGATGGTCCCAC TGTTCCTAAGACCCAGATTTCAACAAGCTGGATGGTCCCAC < 41bp 0.368473990439499 0.782690248275393 0.082838595 0.22481576 prediction 0.565380496550785 Functional Gain - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48340801 chrX:48340805 nonsynonymous SNV 0.969 1 25 hm5C_associated_SNPs_103500 0 0 1 0 3 FTSJ1 chrX:48340791 3'AG 48340791 Downstream 15bp
chrX 48340805 48340805 1 + C A LUAD 48340801 + 48340781 48340821 41 TGTTCCTAAGACCCAGATTTCAACCAGCTGGATGGTCCCAC TGTTCCTAAGACCCAGATTTCAACAAGCTGGATGGTCCCAC < 41bp 0.368473990439499 0.782690248275393 0.082838595 0.22481576 prediction 0.565380496550785 Functional Gain - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48340801 chrX:48340805 nonsynonymous SNV 0.969 1 25 hm5C_associated_SNPs_103500 0 0 1 0 3 FTSJ1 chrX:48340797 3'AG 48340797 Downstream 9bp
chrX 48340805 48340805 1 + C A LUAD 48340801 + 48340781 48340821 41 TGTTCCTAAGACCCAGATTTCAACCAGCTGGATGGTCCCAC TGTTCCTAAGACCCAGATTTCAACAAGCTGGATGGTCCCAC < 41bp 0.368473990439499 0.782690248275393 0.082838595 0.22481576 prediction 0.565380496550785 Functional Gain - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48340801 chrX:48340805 nonsynonymous SNV 0.969 1 25 hm5C_associated_SNPs_103500 0 0 1 0 3 FTSJ1 chrX:48340894 5'GT 48340894 Upstream 90bp
chr16 27454345 27454345 1 + C A rs146177564 27454341 + 27454321 27454361 41 TCAGGACAGTATAATATCTCCTGGCGCTCAGATTACGAAGA TCAGGACAGTATAATATCTCCTGGAGCTCAGATTACGAAGA < 41bp 0.364538200533874 0.782690053934173 0.046343982 0.10474908 prediction 0.565380107868345 Functional Gain - IL21R ENSG00000103522 CDS Human protein_coding chr16:27454341 chr16:27454345 nonsynonymous SNV 0.017 1 25 hm5C_associated_SNPs_103501 0 0 0 0 2 IL21R chr16:27454283 3'AG 27454283 Downstream 63bp
chr16 27454345 27454345 1 + C A rs146177564 27454341 + 27454321 27454361 41 TCAGGACAGTATAATATCTCCTGGCGCTCAGATTACGAAGA TCAGGACAGTATAATATCTCCTGGAGCTCAGATTACGAAGA < 41bp 0.364538200533874 0.782690053934173 0.046343982 0.10474908 prediction 0.565380107868345 Functional Gain - IL21R ENSG00000103522 CDS Human protein_coding chr16:27454341 chr16:27454345 nonsynonymous SNV 0.017 1 25 hm5C_associated_SNPs_103501 0 0 0 0 2 IL21R chr16:27454437 5'GT 27454437 Upstream 93bp
chr16 1816059 1816059 1 + C A UCEC 1816055 + 1816035 1816075 41 GATGGCGTGCTGGCCGGTATCACCCTGGTGGGCTGTGCCAC GATGGCGTGCTGGCCGGTATCACCATGGTGGGCTGTGCCAC < 41bp 0.633666876630319 0.916328800461084 0.7938212 0.89579314 prediction 0.56532384766153 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1816055 chr16:1816059 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_103503 0 0 1 0 1 MAPK8IP3 chr16:1815961 3'AG 1815961 Downstream 99bp
chr17 54431282 54431282 1 + C G BLCA 54431281 + 54431261 54431301 41 TCCTCCTGTATCAGTACACACCAGAAGAACTTGACCTCAAC TCCTCCTGTATCAGTACACACGAGAAGAACTTGACCTCAAC < 41bp 0.505532087861595 0.788187920952918 0.17461595 0.43092072 prediction 0.565311666182645 Functional Gain - ANKFN1 ENSG00000153930 CDS Human protein_coding chr17:54431281 chr17:54431282 nonsynonymous SNV 0.813 0 22 hm5C_associated_SNPs_103505 0 0 0 0 1 ANKFN1 chr17:54431197 3'AG 54431197 Downstream 86bp
chr19 49055524 49055524 1 + C G rs16982141 49055523 + 49055503 49055543 41 ACCTGCCATGGACGGGCCCGCCGAGCCCCAGATCCCGGGCT ACCTGCCATGGACGGGCCCGCGGAGCCCCAGATCCCGGGCT < 41bp 0.533053034893948 0.815705834292759 0.52460825 0.8734982 prediction 0.565305598797623 Functional Gain - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49055523 chr19:49055524 synonymous SNV . 0 22 hm5C_associated_SNPs_103506 0 0 0 0 1 SULT2B1 chr19:49055580 5'GT 49055580 Upstream 57bp
chr19 2247812 2247812 1 + C G STAD 2247811 + 2247791 2247831 41 TGGAGAAGCCCCCGGCTCCACCCAGCCTCCCTGCTGGCCCC TGGAGAAGCCCCCGGCTCCACGCAGCCTCCCTGCTGGCCCC < 41bp 0.529457602614502 0.812101311521811 0.045555264 0.17926061 prediction 0.565287417814618 Functional Gain - SF3A2 ENSG00000104897 CDS Human protein_coding chr19:2247811 chr19:2247812 nonsynonymous SNV 0.640 1 22 hm5C_associated_SNPs_103507 0 0 1 0 1 SF3A2 chr19:2247766 3'AG 2247766 Downstream 47bp
chr20 42695418 42695418 1 + C G LUAD 42695414 + 42695394 42695434 41 CCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAACCC CCCAGCAGCTCGGGATCCTGCTCAGCTGGCCCATCCAACCC < 41bp 0.501493041729489 0.784108466388208 0.055838495 0.13656628 prediction 0.565230849317438 Functional Gain - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695414 chr20:42695418 nonsynonymous SNV 0.909 1 25 hm5C_associated_SNPs_103508 0 0 1 0 2 TOX2 chr20:42695370 3'AG 42695370 Downstream 49bp
chr20 42695418 42695418 1 + C G LUAD 42695414 + 42695394 42695434 41 CCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAACCC CCCAGCAGCTCGGGATCCTGCTCAGCTGGCCCATCCAACCC < 41bp 0.501493041729489 0.784108466388208 0.055838495 0.13656628 prediction 0.565230849317438 Functional Gain - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695414 chr20:42695418 nonsynonymous SNV 0.909 1 25 hm5C_associated_SNPs_103508 0 0 1 0 2 TOX2 chr20:42695497 5'GT 42695497 Upstream 80bp
chr22 41903841 41903841 1 + C G rs141772938 41903840 + 41903820 41903860 41 GAGAAGATTGTGTATGGACACCTGGATGACCCCGCCAGCCA GAGAAGATTGTGTATGGACACGTGGATGACCCCGCCAGCCA < 41bp 0.540797267197274 0.82338744649811 0.32511285 0.73657274 prediction 0.565180358601671 Functional Gain - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41903840 chr22:41903841 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_103509 1 0 1 0 1 ACO2 chr22:41903795 3'AG 41903795 Downstream 47bp
chr2 176965007 176965007 1 + C A LUAD 176965003 + 176964983 176965023 41 CTGCTCCAGGGGGCTCCCTGCGCCCCTGGCTTCAAGGACGA CTGCTCCAGGGGGCTCCCTGCGCCACTGGCTTCAAGGACGA < 41bp 0.621563206257724 0.904113973200489 0.18141603 0.22453171 prediction 0.565101533885531 Functional Gain - HOXD12 ENSG00000170178 CDS Human protein_coding chr2:176965003 chr2:176965007 nonsynonymous SNV 0.012 1 25 hm5C_associated_SNPs_103511 0 0 0 0 1 HOXD12 chr2:176965103 5'GT 176965103 Upstream 97bp
chr1 67155926 67155926 1 + C A LUAD 67155922 + 67155902 67155942 41 TTCCAGCCCTCCTCCAATAGCACCCTTAGCGCGGGCTGAAA TTCCAGCCCTCCTCCAATAGCACCATTAGCGCGGGCTGAAA < 41bp 0.359697533001821 0.782539780367091 0.01231721 0.091345996 prediction 0.565079560734182 Functional Gain - SGIP1 ENSG00000118473 CDS Human protein_coding chr1:67155922 chr1:67155926 synonymous SNV . 0 25 hm5C_associated_SNPs_103512 0 0 0 0 2 SGIP1 chr1:67155873 3'AG 67155873 Downstream 54bp
chr1 67155926 67155926 1 + C A LUAD 67155922 + 67155902 67155942 41 TTCCAGCCCTCCTCCAATAGCACCCTTAGCGCGGGCTGAAA TTCCAGCCCTCCTCCAATAGCACCATTAGCGCGGGCTGAAA < 41bp 0.359697533001821 0.782539780367091 0.01231721 0.091345996 prediction 0.565079560734182 Functional Gain - SGIP1 ENSG00000118473 CDS Human protein_coding chr1:67155922 chr1:67155926 synonymous SNV . 0 25 hm5C_associated_SNPs_103512 0 0 0 0 2 SGIP1 chr1:67155999 5'GT 67155999 Upstream 74bp
chrX 48542809 48542809 1 + T G UCEC 48542807 + 48542787 48542827 41 ACTTCATCCGCCTTTACGGCCTTCAGGTGACCCCCCCACCC ACTTCATCCGCCTTTACGGCCTGCAGGTGACCCCCCCACCC < 41bp 0.559736395457528 0.842260870072293 0.37146306 0.23776832 prediction 0.56504894922953 Functional Gain - WAS ENSG00000015285 CDS Human protein_coding chrX:48542807 chrX:48542809 synonymous SNV . 0 23 hm5C_associated_SNPs_103513 0 0 0 0 1 WAS chrX:48542812 5'GT 48542812 Upstream 4bp
chr11 125267928 125267928 1 + C A COAD 125267924 + 125267904 125267944 41 TGATCTAGGGGGGCCCTACTCCCCCAACCAGCCCTCCATCA TGATCTAGGGGGGCCCTACTCCCCAAACCAGCCCTCCATCA < 41bp 0.350581888072829 0.782494549875128 0.039802194 0.13157591 prediction 0.564989099750256 Functional Gain - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125267924 chr11:125267928 synonymous SNV . 0 25 hm5C_associated_SNPs_103518 0 0 0 0 1 PKNOX2 chr11:125267958 5'GT 125267958 Upstream 31bp
chr19 45176160 45176160 1 + C G LUSC 45176156 + 45176136 45176176 41 GCTGCGCCGCGCCCAGCCTACAGACAGTGGCACCTACCAAG GCTGCGCCGCGCCCAGCCTACAGAGAGTGGCACCTACCAAG < 41bp 0.484579102783234 0.782492251214223 0.17093062 0.40909693 prediction 0.564984502428447 Functional Gain - CEACAM19 ENSG00000186567 CDS Human protein_coding chr19:45176156 chr19:45176160 nonsynonymous SNV 0.629 5 25 hm5C_associated_SNPs_103519 0 0 0 0 1 CEACAM19 chr19:45176236 5'GT 45176236 Upstream 77bp
chrX 150832794 150832794 1 + C G rs202217272 150832793 + 150832773 150832813 41 GATCCAGAGGACTCAGTGGACCTGGGGGCTGCTGGCGCAAG GATCCAGAGGACTCAGTGGACGTGGGGGCTGCTGGCGCAAG < 41bp 0.504377594493501 0.786865693243919 0.6843655 0.8657435 prediction 0.564976197500835 Functional Gain - PASD1 ENSG00000166049 CDS Human protein_coding chrX:150832793 chrX:150832794 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_103520 0 0 0 0 1 PASD1 chrX:150832820 5'GT 150832820 Upstream 27bp
chr6 44274791 44274791 1 + C G rs111839169 44274787 + 44274767 44274807 41 GCCTAAAGGGGTTCAGAGCCCAGACATGAATCCCCAGCGGC GCCTAAAGGGGTTCAGAGCCCAGAGATGAATCCCCAGCGGC < 41bp 0.513752024540408 0.796228212173482 0.17128542 0.5203754 prediction 0.564952375266148 Functional Gain - AARS2 ENSG00000178233;ENSG00000272442 UTR3 Human other chr6:44274787 chr6:44274791 . . 0 25 hm5C_associated_SNPs_103522 0 0 0 0 1 AARS2 chr6:44274812 5'GT 44274812 Upstream 22bp
chr22 45128218 45128218 1 + C G rs150104103 45128217 + 45128197 45128237 41 AAGCTAGAGGATGCGCTGGCCCGGGCCCATGCCCGTGTGCC AAGCTAGAGGATGCGCTGGCCGGGGCCCATGCCCGTGTGCC < 41bp 0.480488420323627 0.782442593866028 0.4189783 0.9064132 prediction 0.564885187732056 Functional Gain - PRR5 ENSG00000186654;ENSG00000241484;ENSG00000248405 CDS Human other chr22:45128217 chr22:45128218 nonsynonymous SNV 0.847 2 22 hm5C_associated_SNPs_103524 0 0 1 0 2 PRR5 chr22:45128131 3'AG 45128131 Downstream 88bp
chr22 45128218 45128218 1 + C G rs150104103 45128217 + 45128197 45128237 41 AAGCTAGAGGATGCGCTGGCCCGGGCCCATGCCCGTGTGCC AAGCTAGAGGATGCGCTGGCCGGGGCCCATGCCCGTGTGCC < 41bp 0.480488420323627 0.782442593866028 0.4189783 0.9064132 prediction 0.564885187732056 Functional Gain - PRR5 ENSG00000186654;ENSG00000241484;ENSG00000248405 CDS Human other chr22:45128217 chr22:45128218 nonsynonymous SNV 0.847 2 22 hm5C_associated_SNPs_103524 0 0 1 0 2 PRR5 chr22:45128271 5'GT 45128271 Upstream 54bp
chr5 153054124 153054124 1 + T A LUAD 153054120 + 153054100 153054140 41 GCGCCAATGTGACAGGTTTCCAGCTGGTGAACTACACAGAC GCGCCAATGTGACAGGTTTCCAGCAGGTGAACTACACAGAC < 41bp 0.507860006585147 0.790294613599168 0.730146 0.87568367 prediction 0.564869214028042 Functional Gain - GRIA1 ENSG00000155511 CDS Human protein_coding chr5:153054120 chr5:153054124 nonsynonymous SNV 0.992 5 25 hm5C_associated_SNPs_103525 0 0 0 0 2 GRIA1 chr5:153054060 3'AG 153054060 Downstream 65bp
chr5 153054124 153054124 1 + T A LUAD 153054120 + 153054100 153054140 41 GCGCCAATGTGACAGGTTTCCAGCTGGTGAACTACACAGAC GCGCCAATGTGACAGGTTTCCAGCAGGTGAACTACACAGAC < 41bp 0.507860006585147 0.790294613599168 0.730146 0.87568367 prediction 0.564869214028042 Functional Gain - GRIA1 ENSG00000155511 CDS Human protein_coding chr5:153054120 chr5:153054124 nonsynonymous SNV 0.992 5 25 hm5C_associated_SNPs_103525 0 0 0 0 2 GRIA1 chr5:153054221 5'GT 153054221 Upstream 98bp
chr15 39877708 39877708 1 + T C KIRC 39877706 + 39877686 39877726 41 TGCAAAAAGGTGTCCTGCCCCATCATGCCCTGCTCCAATGC TGCAAAAAGGTGTCCTGCCCCACCATGCCCTGCTCCAATGC < 41bp 0.512177555201189 0.794610363681187 0.10483971 0.06659359 prediction 0.564865616959996 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39877706 chr15:39877708 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_103526 0 0 1 0 2 THBS1 chr15:39877671 3'AG 39877671 Downstream 38bp
chr15 39877708 39877708 1 + T C KIRC 39877706 + 39877686 39877726 41 TGCAAAAAGGTGTCCTGCCCCATCATGCCCTGCTCCAATGC TGCAAAAAGGTGTCCTGCCCCACCATGCCCTGCTCCAATGC < 41bp 0.512177555201189 0.794610363681187 0.10483971 0.06659359 prediction 0.564865616959996 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39877706 chr15:39877708 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_103526 0 0 1 0 2 THBS1 chr15:39877764 5'GT 39877764 Upstream 57bp
chr15 55642961 55642961 1 + T A UCEC 55642957 + 55642937 55642977 41 TCTAAGTTTCCTGTTTTTATCAAATTTGTTCCTCGCCCTTT TCTAAGTTTCCTGTTTTTATCAAAATTGTTCCTCGCCCTTT < 41bp 0.538856683033683 0.821281480676634 0.41025975 0.86969036 prediction 0.564849595285902 Functional Gain - PIGB ENSG00000069943 CDS Human protein_coding chr15:55642957 chr15:55642961 nonsynonymous SNV 0.930 4 25 hm5C_associated_SNPs_103527 0 0 0 0 1 PIGB chr15:55642897 3'AG 55642897 Downstream 65bp
chr20 36982743 36982743 1 + T A rs571584747 36982739 + 36982719 36982759 41 GCATCAGCATTTCGGTCAACCTCCTGTTGGGCAGCGAGTCC GCATCAGCATTTCGGTCAACCTCCAGTTGGGCAGCGAGTCC < 41bp 0.580538115852225 0.862930533678698 0.06864342 0.93865645 prediction 0.564784835652947 Functional Gain - LBP ENSG00000129988 CDS Human protein_coding chr20:36982739 chr20:36982743 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_103531 0 0 0 0 2 LBP chr20:36982684 3'AG 36982684 Downstream 60bp
chr20 36982743 36982743 1 + T A rs571584747 36982739 + 36982719 36982759 41 GCATCAGCATTTCGGTCAACCTCCTGTTGGGCAGCGAGTCC GCATCAGCATTTCGGTCAACCTCCAGTTGGGCAGCGAGTCC < 41bp 0.580538115852225 0.862930533678698 0.06864342 0.93865645 prediction 0.564784835652947 Functional Gain - LBP ENSG00000129988 CDS Human protein_coding chr20:36982739 chr20:36982743 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_103531 0 0 0 0 2 LBP chr20:36982839 5'GT 36982839 Upstream 97bp
chr8 104153261 104153261 1 + C G rs372167132 104153260 + 104153240 104153280 41 GCCGCCGCCCCGGACAGCGGCCCCGAAGCGGGCGGCCTGCA GCCGCCGCCCCGGACAGCGGCGCCGAAGCGGGCGGCCTGCA < 41bp 0.518585090256141 0.80093000916396 0.14251593 0.7801771 prediction 0.564689837815637 Functional Gain - BAALC ENSG00000164929 CDS Human protein_coding chr8:104153260 chr8:104153261 nonsynonymous SNV 0.990 1 22 hm5C_associated_SNPs_103536 0 0 0 0 1 BAALC chr8:104153285 5'GT 104153285 Upstream 25bp
chr5 23524525 23524525 1 + C G LUSC 23524521 + 23524501 23524541 41 AGGCAGATCTTCTATAGAACCTGCCGAGTCATTAGGCCAGG AGGCAGATCTTCTATAGAACCTGCGGAGTCATTAGGCCAGG < 41bp 0.507406105702915 0.78973522905546 0.20862103 0.37684593 prediction 0.564658246705089 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23524521 chr5:23524525 nonsynonymous SNV 0.468 3 25 hm5C_associated_SNPs_103537 0 0 0 0 1 PRDM9 chr5:23524443 3'AG 23524443 Downstream 83bp
chr19 39395721 39395721 1 + C A LIHC 39395717 + 39395697 39395737 41 GGATTTTCTTCTAGGCTTCTCGGCCGGCACTGAGTACATGG GGATTTTCTTCTAGGCTTCTCGGCAGGCACTGAGTACATGG < 41bp 0.623093754888446 0.905419037968416 0.38678327 0.48411766 prediction 0.564650566159939 Functional Gain - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39395717 chr19:39395721 synonymous SNV . 0 25 hm5C_associated_SNPs_103538 0 0 1 0 3 NFKBIB chr19:39395655 3'AG 39395655 Downstream 67bp
chr19 39395721 39395721 1 + C A LIHC 39395717 + 39395697 39395737 41 GGATTTTCTTCTAGGCTTCTCGGCCGGCACTGAGTACATGG GGATTTTCTTCTAGGCTTCTCGGCAGGCACTGAGTACATGG < 41bp 0.623093754888446 0.905419037968416 0.38678327 0.48411766 prediction 0.564650566159939 Functional Gain - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39395717 chr19:39395721 synonymous SNV . 0 25 hm5C_associated_SNPs_103538 0 0 1 0 3 NFKBIB chr19:39395711 3'AG 39395711 Downstream 11bp
chr19 39395721 39395721 1 + C A LIHC 39395717 + 39395697 39395737 41 GGATTTTCTTCTAGGCTTCTCGGCCGGCACTGAGTACATGG GGATTTTCTTCTAGGCTTCTCGGCAGGCACTGAGTACATGG < 41bp 0.623093754888446 0.905419037968416 0.38678327 0.48411766 prediction 0.564650566159939 Functional Gain - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39395717 chr19:39395721 synonymous SNV . 0 25 hm5C_associated_SNPs_103538 0 0 1 0 3 NFKBIB chr19:39395760 5'GT 39395760 Upstream 40bp
chr21 45711057 45711057 1 + T G UCEC 45711055 + 45711035 45711075 41 GGCTGCCCTCGGGCCTTCCACCTGGCCTGCCTGTCCCCTCC GGCTGCCCTCGGGCCTTCCACCGGGCCTGCCTGTCCCCTCC < 41bp 0.591323944628061 0.873646628386021 0.68634176 0.94247663 prediction 0.56464536751592 Functional Gain - AIRE ENSG00000160224 CDS Human protein_coding chr21:45711055 chr21:45711057 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_103539 0 0 0 0 2 AIRE chr21:45710978 3'AG 45710978 Downstream 80bp
chr21 45711057 45711057 1 + T G UCEC 45711055 + 45711035 45711075 41 GGCTGCCCTCGGGCCTTCCACCTGGCCTGCCTGTCCCCTCC GGCTGCCCTCGGGCCTTCCACCGGGCCTGCCTGTCCCCTCC < 41bp 0.591323944628061 0.873646628386021 0.68634176 0.94247663 prediction 0.56464536751592 Functional Gain - AIRE ENSG00000160224 CDS Human protein_coding chr21:45711055 chr21:45711057 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_103539 0 0 0 0 2 AIRE chr21:45711093 5'GT 45711093 Upstream 37bp
chr12 53514576 53514576 1 + T G UCEC 53514574 + 53514554 53514594 41 TGTCCCCAACCACCAGGCATCTTCATGCTGCTGCTCATCTT TGTCCCCAACCACCAGGCATCTGCATGCTGCTGCTCATCTT < 41bp 0.448495268095076 0.782322319153504 0.13614243 0.123702526 prediction 0.564644638307009 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53514574 chr12:53514576 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_103540 0 0 0 8 2 SOAT2 chr12:53514570 3'AG 53514570 Downstream 7bp
chr12 53514576 53514576 1 + T G UCEC 53514574 + 53514554 53514594 41 TGTCCCCAACCACCAGGCATCTTCATGCTGCTGCTCATCTT TGTCCCCAACCACCAGGCATCTGCATGCTGCTGCTCATCTT < 41bp 0.448495268095076 0.782322319153504 0.13614243 0.123702526 prediction 0.564644638307009 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53514574 chr12:53514576 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_103540 0 0 0 8 2 SOAT2 chr12:53514667 5'GT 53514667 Upstream 92bp
chr5 5242192 5242192 1 + T A LUSC 5242188 + 5242168 5242208 41 GCTGTTTCAGGGAAGGAACCCGGGTGTTGCCTGGGAATACT GCTGTTTCAGGGAAGGAACCCGGGAGTTGCCTGGGAATACT < 41bp 0.529293607371439 0.811605658882196 0.92087483 0.92390704 prediction 0.564624103021514 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5242188 chr5:5242192 synonymous SNV . 0 25 hm5C_associated_SNPs_103541 0 0 0 0 1 ADAMTS16 chr5:5242166 3'AG 5242166 Downstream 27bp
chr5 23524542 23524542 1 + C A UCEC 23524538 + 23524518 23524558 41 AACCTGCCGAGTCATTAGGCCAGGCTGTGAACTGCTGGTCT AACCTGCCGAGTCATTAGGCCAGGATGTGAACTGCTGGTCT < 41bp 0.379816973963045 0.782290886459793 0.44560373 0.7295971 prediction 0.564581772919585 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23524538 chr5:23524542 synonymous SNV . 0 25 hm5C_associated_SNPs_103544 0 0 0 0 2 PRDM9 chr5:23524443 3'AG 23524443 Downstream 100bp
chr5 23524542 23524542 1 + C A UCEC 23524538 + 23524518 23524558 41 AACCTGCCGAGTCATTAGGCCAGGCTGTGAACTGCTGGTCT AACCTGCCGAGTCATTAGGCCAGGATGTGAACTGCTGGTCT < 41bp 0.379816973963045 0.782290886459793 0.44560373 0.7295971 prediction 0.564581772919585 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23524538 chr5:23524542 synonymous SNV . 0 25 hm5C_associated_SNPs_103544 0 0 0 0 2 PRDM9 chr5:23524636 5'GT 23524636 Upstream 95bp
chr10 99995881 99995881 1 + C G rs144632612 99995880 + 99995860 99995900 41 TCGAAGTAAGCAGAGCAAAACCGAACGAGAAGCAGAGCTCA TCGAAGTAAGCAGAGCAAAACGGAACGAGAAGCAGAGCTCA < 41bp 0.486252099216386 0.782281565079693 0.7049532 0.8730625 prediction 0.564563130159387 Functional Gain - R3HCC1L ENSG00000166024 CDS Human protein_coding chr10:99995880 chr10:99995881 synonymous SNV . 0 22 hm5C_associated_SNPs_103546 0 0 1 0 1 R3HCC1L chr10:99995921 5'GT 99995921 Upstream 41bp
chr8 23428924 23428924 1 + C G rs79810688 23428923 + 23428903 23428943 41 CATCCGGACGGTGTGGAGGACCGAGGGGTTGGGGGCCTTCT CATCCGGACGGTGTGGAGGACGGAGGGGTTGGGGGCCTTCT < 41bp 0.532469064972576 0.814674413735965 0.8878937 0.9176776 prediction 0.564410697526779 Functional Gain - SLC25A37 ENSG00000147454 CDS Human protein_coding chr8:23428923 chr8:23428924 synonymous SNV . 0 22 hm5C_associated_SNPs_103553 0 0 1 0 1 SLC25A37 chr8:23428848 3'AG 23428848 Downstream 77bp
chr4 187173218 187173218 1 + T G SKCM 187173216 + 187173196 187173236 41 CATTGTTGGAGGAACAAACTCTTCTTGGGGAGAGTGGCCCT CATTGTTGGAGGAACAAACTCTGCTTGGGGAGAGTGGCCCT < 41bp 0.56257143556437 0.844770573914022 0.27704683 0.41806132 prediction 0.564398276699305 Functional Gain - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187173216 chr4:187173218 nonsynonymous SNV 0.966 1 23 hm5C_associated_SNPs_103554 0 0 0 0 1 KLKB1 chr4:187173171 3'AG 187173171 Downstream 48bp
chr18 29788190 29788190 1 + C G LIHC 29788189 + 29788169 29788209 41 GGCAACGGGTTTCACAGGTTCCCAGGGGGCCAGAGAGTGAT GGCAACGGGTTTCACAGGTTCGCAGGGGGCCAGAGAGTGAT < 41bp 0.539644820026267 0.821833473927221 0.10205904 0.3157643 prediction 0.564377307801907 Functional Gain - MEP1B ENSG00000141434 CDS Human protein_coding chr18:29788189 chr18:29788190 nonsynonymous SNV 0.027 0 22 hm5C_associated_SNPs_103555 0 0 0 0 1 MEP1B chr18:29788234 5'GT 29788234 Upstream 45bp
chrX 118151528 118151528 1 + T A COAD 118151524 + 118151504 118151544 41 CCGAATGGCCCAGCCTGGTGCTGGTGGATGTTAGCAGTTCT CCGAATGGCCCAGCCTGGTGCTGGAGGATGTTAGCAGTTCT < 41bp 0.479528273636942 0.782178836707251 0.36549217 0.54473925 prediction 0.564357673414503 Functional Gain - LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118151524 chrX:118151528 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103556 0 0 0 0 1 LONRF3 chrX:118151498 3'AG 118151498 Downstream 31bp
chr7 65217260 65217260 1 + C G rs567217501 65217259 + 65217239 65217279 41 ACTAAAAATACAAAAATTAGCCGGGCACGGTCCTGCACAGT ACTAAAAATACAAAAATTAGCGGGGCACGGTCCTGCACAGT < 41bp 0.496048391722695 0.782176801030928 0.6734909 0.9315538 prediction 0.564353602061856 Functional Gain - CCT6P1;LOC441242 ENSG00000228409 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:65217259 chr7:65217260 . . 0 22 hm5C_associated_SNPs_103557 0 0 1 0 1 CCT6P1;LOC441242 chr7:65217297 5'GT 65217297 Upstream 38bp
chr4 89318075 89318075 1 + C A HNSC 89318071 + 89318051 89318091 41 TGGTCATGGACCAAGTGACACAAGCAAGCCAACTCATCCGG TGGTCATGGACCAAGTGACACAAGAAAGCCAACTCATCCGG < 41bp 0.382092713414185 0.7821452135435 0.06213057 0.120164424 prediction 0.564290427087001 Functional Gain - HERC6 ENSG00000138642 CDS Human protein_coding chr4:89318071 chr4:89318075 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_103558 0 0 0 0 2 HERC6 chr4:89318003 3'AG 89318003 Downstream 73bp
chr4 89318075 89318075 1 + C A HNSC 89318071 + 89318051 89318091 41 TGGTCATGGACCAAGTGACACAAGCAAGCCAACTCATCCGG TGGTCATGGACCAAGTGACACAAGAAAGCCAACTCATCCGG < 41bp 0.382092713414185 0.7821452135435 0.06213057 0.120164424 prediction 0.564290427087001 Functional Gain - HERC6 ENSG00000138642 CDS Human protein_coding chr4:89318071 chr4:89318075 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_103558 0 0 0 0 2 HERC6 chr4:89318139 5'GT 89318139 Upstream 65bp
chr9 27183515 27183515 1 + T G CESC 27183512 + 27183492 27183532 41 CCAGATCATATAGAAGTAAACAGTGGTAAATTTAATCCCAT CCAGATCATATAGAAGTAAACAGGGGTAAATTTAATCCCAT < 41bp 0.398626937601696 0.782136046058698 0.32759482 0.91028005 prediction 0.564272092117397 Functional Gain - TEK ENSG00000120156 CDS Human protein_coding chr9:27183512 chr9:27183515 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_103560 0 0 0 0 1 TEK chr9:27183457 3'AG 27183457 Downstream 59bp
chr5 7521010 7521010 1 + C A STAD 7521006 + 7520986 7521026 41 GGAGGCAAGGAGCACCTGGTCTGGCAGGTGGGTGCACCTCC GGAGGCAAGGAGCACCTGGTCTGGAAGGTGGGTGCACCTCC < 41bp 0.615691593852783 0.897810229218598 0.44656277 0.4523977 prediction 0.564237270731629 Functional Gain - ADCY2 ENSG00000078295 CDS Human protein_coding chr5:7521006 chr5:7521010 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_103564 0 0 0 0 1 ADCY2 chr5:7521012 5'GT 7521012 Upstream 3bp
chr19 6919585 6919585 1 + T A LUSC 6919581 + 6919561 6919601 41 ACCACTGGTGTGGCTTTTGTCTCCTTTGTGGGCATGGAATC ACCACTGGTGTGGCTTTTGTCTCCATTGTGGGCATGGAATC < 41bp 0.576888007604449 0.858949749521216 0.15257967 0.9556782 prediction 0.564123483833533 Functional Gain - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6919581 chr19:6919585 nonsynonymous SNV 0.986 2 25 hm5C_associated_SNPs_103569 0 0 0 0 1 ADGRE1 chr19:6919559 3'AG 6919559 Downstream 27bp
chr5 164028056 164028056 1 + C A COAD 164028052 + 164028032 164028072 41 GGAGTGGGTGGACCCAATGCCAGGCCGGCCGTGCTTCACGG GGAGTGGGTGGACCCAATGCCAGGACGGCCGTGCTTCACGG < 41bp 0.574924108037285 0.85697242027654 0.8386644 0.87628317 prediction 0.564096624478511 Functional Gain - LOC102546299;NONE ENSG00000241956;ENSG00000253600 ncRNA_exonic Human antisense chr5:164028052 chr5:164028056 . . 0 25 hm5C_associated_SNPs_103571 0 0 0 0 1 LOC102546299;NONE chr5:164027981 3'AG 164027981 Downstream 76bp
chr19 39905660 39905660 1 + C G rs144626871 39905659 + 39905639 39905679 41 AGCCCCCACCATGGCCTCCCCCCGAGGTTCTGGGAGCTCCA AGCCCCCACCATGGCCTCCCCGCGAGGTTCTGGGAGCTCCA < 41bp 0.474838172001039 0.782048080222052 0.392835 0.76543045 prediction 0.564096160444105 Functional Gain - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39905659 chr19:39905660 synonymous SNV . 0 22 hm5C_associated_SNPs_103572 0 0 1 0 1 PLEKHG2 chr19:39905632 3'AG 39905632 Downstream 29bp
chr1 6647572 6647572 1 + C G OV 6647568 + 6647548 6647588 41 GTGCCAAGTGCTTCCTGTCTCGGACAGAGCTGCAGCTGCAT GTGCCAAGTGCTTCCTGTCTCGGAGAGAGCTGCAGCTGCAT < 41bp 0.505540051570433 0.787578510087001 0.36089408 0.90336657 prediction 0.564076917033136 Functional Gain - ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6647568 chr1:6647572 nonsynonymous SNV 0.967 1 25 hm5C_associated_SNPs_103573 0 0 0 0 1 ZBTB48 chr1:6647538 3'AG 6647538 Downstream 35bp
chr2 102446002 102446002 1 + C G SKCM 102446001 + 102445981 102446021 41 CACATTCATCATGTGATTCACCGGGATATCAAGGGCCAGAA CACATTCATCATGTGATTCACGGGGATATCAAGGGCCAGAA < 41bp 0.496616084416124 0.781964852376847 0.7874646 0.9371662 prediction 0.563929704753695 Functional Gain - MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102446001 chr2:102446002 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_103578 0 0 1 0 2 MAP4K4 chr2:102445966 3'AG 102445966 Downstream 37bp
chr2 102446002 102446002 1 + C G SKCM 102446001 + 102445981 102446021 41 CACATTCATCATGTGATTCACCGGGATATCAAGGGCCAGAA CACATTCATCATGTGATTCACGGGGATATCAAGGGCCAGAA < 41bp 0.496616084416124 0.781964852376847 0.7874646 0.9371662 prediction 0.563929704753695 Functional Gain - MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102446001 chr2:102446002 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_103578 0 0 1 0 2 MAP4K4 chr2:102446056 5'GT 102446056 Upstream 55bp
chr1 43124576 43124576 1 + T G UCEC 43124574 + 43124554 43124594 41 GTGCCTAAGACGGCCGAGAACTTTAGGTAAGGACGTGCTCC GTGCCTAAGACGGCCGAGAACTGTAGGTAAGGACGTGCTCC < 41bp 0.498786092546308 0.781953989549975 0.3930661 0.3120039 prediction 0.56390797909995 Functional Gain - PPIH ENSG00000171960 CDS Human protein_coding chr1:43124574 chr1:43124576 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_103580 0 0 1 0 2 PPIH chr1:43124515 3'AG 43124515 Downstream 62bp
chr1 43124576 43124576 1 + T G UCEC 43124574 + 43124554 43124594 41 GTGCCTAAGACGGCCGAGAACTTTAGGTAAGGACGTGCTCC GTGCCTAAGACGGCCGAGAACTGTAGGTAAGGACGTGCTCC < 41bp 0.498786092546308 0.781953989549975 0.3930661 0.3120039 prediction 0.56390797909995 Functional Gain - PPIH ENSG00000171960 CDS Human protein_coding chr1:43124574 chr1:43124576 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_103580 0 0 1 0 2 PPIH chr1:43124579 5'GT 43124579 Upstream 4bp
chr1 114442526 114442526 1 + C A UCEC 114442522 + 114442502 114442542 41 GAAGGAAAAGGAGCAGACACCTACCTATGGCAAAGATGGCA GAAGGAAAAGGAGCAGACACCTACATATGGCAAAGATGGCA < 41bp 0.373779217812297 0.78195106094102 0.043630242 0.5871954 prediction 0.563902121882039 Functional Gain - AP4B1 ENSG00000134262 CDS Human protein_coding chr1:114442522 chr1:114442526 nonsynonymous SNV 0.981 4 25 hm5C_associated_SNPs_103581 0 0 0 0 1 AP4B1-AS1 chr1:114442494 3'AG 114442494 Downstream 33bp
chr8 86356284 86356284 1 + C G OV 86356283 + 86356263 86356303 41 CTTCATTTGGTTCACTGGAACCCGAAGTATAACACTTTTAA CTTCATTTGGTTCACTGGAACGCGAAGTATAACACTTTTAA < 41bp 0.538518786669797 0.820453612335424 0.18530339 0.17209145 prediction 0.563869651331254 Functional Gain - CA3 ENSG00000164879 CDS Human protein_coding chr8:86356283 chr8:86356284 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_103582 0 0 0 0 2 CA3 chr8:86356263 3'AG 86356263 Downstream 22bp
chr8 86356284 86356284 1 + C G OV 86356283 + 86356263 86356303 41 CTTCATTTGGTTCACTGGAACCCGAAGTATAACACTTTTAA CTTCATTTGGTTCACTGGAACGCGAAGTATAACACTTTTAA < 41bp 0.538518786669797 0.820453612335424 0.18530339 0.17209145 prediction 0.563869651331254 Functional Gain - CA3 ENSG00000164879 CDS Human protein_coding chr8:86356283 chr8:86356284 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_103582 0 0 0 0 2 CA3 chr8:86356355 5'GT 86356355 Upstream 72bp
chr12 119943033 119943033 1 + C A COAD 119943029 + 119943009 119943049 41 GATGAGCCCCCAAGTGTGAACACCCAGGTGACCAGCAGCAA GATGAGCCCCCAAGTGTGAACACCAAGGTGACCAGCAGCAA < 41bp 0.365071928748129 0.781911614454333 0.045283288 0.10399455 prediction 0.563823228908666 Functional Gain - CCDC60 ENSG00000183273 CDS Human protein_coding chr12:119943029 chr12:119943033 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_103584 0 0 0 0 1 CCDC60 chr12:119943108 5'GT 119943108 Upstream 76bp
chr19 48953686 48953686 1 + C A UCEC 48953682 + 48953662 48953702 41 GGAGGAGCCCCAGGCCCTGGCAGCCTTCCTCCGGGATGAGC GGAGGAGCCCCAGGCCCTGGCAGCATTCCTCCGGGATGAGC < 41bp 0.367490407390323 0.781885190314472 0.394257 0.37947342 prediction 0.563770380628944 Functional Gain - GRWD1 ENSG00000105447 CDS Human protein_coding chr19:48953682 chr19:48953686 synonymous SNV . 0 25 hm5C_associated_SNPs_103586 0 0 1 0 1 GRWD1 chr19:48953783 5'GT 48953783 Upstream 98bp
chr11 66613002 66613002 1 + T G BRCA 66612999 + 66612979 66613019 41 TTCTCCTACACAGCTGTCTTCGGTGCCTACACTGCTTTCCT TTCTCCTACACAGCTGTCTTCGGGGCCTACACTGCTTTCCT < 41bp 0.387826535560512 0.781881099824073 0.59905493 0.9430649 prediction 0.563762199648147 Functional Gain - RCE1 ENSG00000173653 CDS Human protein_coding chr11:66612999 chr11:66613002 synonymous SNV . 0 24 hm5C_associated_SNPs_103587 0 0 1 0 1 RCE1 chr11:66613033 5'GT 66613033 Upstream 32bp
chr19 15757912 15757912 1 + C A COAD 15757908 + 15757888 15757928 41 TTCTACAGCTTCCTGAAGCCCTGGCTGGGTGAGTATCTGTA TTCTACAGCTTCCTGAAGCCCTGGATGGGTGAGTATCTGTA < 41bp 0.458499044414656 0.781853558821505 0.025313467 0.09152159 prediction 0.563707117643011 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15757908 chr19:15757912 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_103589 0 0 1 0 2 CYP4F3 chr19:15757862 3'AG 15757862 Downstream 51bp
chr19 15757912 15757912 1 + C A COAD 15757908 + 15757888 15757928 41 TTCTACAGCTTCCTGAAGCCCTGGCTGGGTGAGTATCTGTA TTCTACAGCTTCCTGAAGCCCTGGATGGGTGAGTATCTGTA < 41bp 0.458499044414656 0.781853558821505 0.025313467 0.09152159 prediction 0.563707117643011 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15757908 chr19:15757912 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_103589 0 0 1 0 2 CYP4F3 chr19:15757915 5'GT 15757915 Upstream 4bp
chr10 24790396 24790396 1 + C A LUSC 24790392 + 24790372 24790412 41 GCCTCCACCTGTGGGCACCTCAGCCATCCACATGAGCCTGC GCCTCCACCTGTGGGCACCTCAGCAATCCACATGAGCCTGC < 41bp 0.433130288929854 0.781815009546583 0.14179847 0.13910279 prediction 0.563630019093166 Functional Gain - KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24790392 chr10:24790396 synonymous SNV . 0 25 hm5C_associated_SNPs_103593 0 0 1 0 2 KIAA1217 chr10:24790308 3'AG 24790308 Downstream 89bp
chr10 24790396 24790396 1 + C A LUSC 24790392 + 24790372 24790412 41 GCCTCCACCTGTGGGCACCTCAGCCATCCACATGAGCCTGC GCCTCCACCTGTGGGCACCTCAGCAATCCACATGAGCCTGC < 41bp 0.433130288929854 0.781815009546583 0.14179847 0.13910279 prediction 0.563630019093166 Functional Gain - KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24790392 chr10:24790396 synonymous SNV . 0 25 hm5C_associated_SNPs_103593 0 0 1 0 2 KIAA1217 chr10:24790474 5'GT 24790474 Upstream 79bp
chr12 118456893 118456893 1 + C A HNSC 118456889 + 118456869 118456909 41 TATTTCAGGGTTGAAAAATACCGGCCACAGACCCTGAATGA TATTTCAGGGTTGAAAAATACCGGACACAGACCCTGAATGA < 41bp 0.396225573906396 0.781800023776032 0.21053645 0.2916484 prediction 0.563600047552063 Functional Gain - RFC5 ENSG00000111445 CDS Human protein_coding chr12:118456889 chr12:118456893 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_103596 0 0 1 0 1 RFC5 chr12:118456941 5'GT 118456941 Upstream 49bp
chr2 130940017 130940017 1 + C A rs201954757 130940013 + 130939993 130940033 41 GGCGGGCGGCGCTATCGACCCCGACGTGTTCAAGTGAGCGG GGCGGGCGGCGCTATCGACCCCGAAGTGTTCAAGTGAGCGG < 41bp 0.421970951388093 0.781792189112643 0.032125443 0.20881191 prediction 0.563584378225286 Functional Gain - MZT2B ENSG00000152082 CDS Human protein_coding chr2:130940013 chr2:130940017 nonsynonymous SNV 0.816 1 25 hm5C_associated_SNPs_103597 0 0 1 0 1 MZT2B chr2:130940025 5'GT 130940025 Upstream 9bp
chr9 82323627 82323627 1 + C G OV 82323626 + 82323606 82323646 41 GGAGCGGCCTACGCTGGGCTCCACAACATCTCCCCTCAGAT GGAGCGGCCTACGCTGGGCTCGACAACATCTCCCCTCAGAT < 41bp 0.520863729250178 0.802654094767544 0.106232256 0.051163465 prediction 0.563580731034732 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82323626 chr9:82323627 nonsynonymous SNV 0.867 4 22 hm5C_associated_SNPs_103598 0 0 0 0 1 TLE4 chr9:82323701 5'GT 82323701 Upstream 75bp
chr19 56569695 56569695 1 + T A ACC 56569691 + 56569671 56569711 41 GGCATCTGACCAGTCTAAACCTGGTGCAGAATAACTTCAGT GGCATCTGACCAGTCTAAACCTGGAGCAGAATAACTTCAGT < 41bp 0.54296289007971 0.824746002424279 0.6938228 0.7334592 prediction 0.563566224689138 Functional Gain - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56569691 chr19:56569695 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_103599 0 0 0 0 2 NLRP5 chr19:56569606 3'AG 56569606 Downstream 90bp
chr19 56569695 56569695 1 + T A ACC 56569691 + 56569671 56569711 41 GGCATCTGACCAGTCTAAACCTGGTGCAGAATAACTTCAGT GGCATCTGACCAGTCTAAACCTGGAGCAGAATAACTTCAGT < 41bp 0.54296289007971 0.824746002424279 0.6938228 0.7334592 prediction 0.563566224689138 Functional Gain - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56569691 chr19:56569695 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_103599 0 0 0 0 2 NLRP5 chr19:56569776 5'GT 56569776 Upstream 82bp
chr1 162326913 162326913 1 + T A SKCM 162326909 + 162326889 162326929 41 AGCAGCAGCAGCAGCAGACACAAGTGGCTGTGGCCCAGGTT AGCAGCAGCAGCAGCAGACACAAGAGGCTGTGGCCCAGGTT < 41bp 0.506175613275324 0.787947557246919 0.177338 0.2993852 prediction 0.563543887943191 Functional Gain - NOS1AP ENSG00000198929 CDS Human protein_coding chr1:162326909 chr1:162326913 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103602 0 0 1 0 1 NOS1AP chr1:162326926 5'GT 162326926 Upstream 14bp
chr16 3535505 3535505 1 + C G rs73489662 3535501 + 3535481 3535521 41 CTCCCTGCTTCTGGAAACCTCTGCCTGCTGCCCTGGCCCTG CTCCCTGCTTCTGGAAACCTCTGCGTGCTGCCCTGGCCCTG < 41bp 0.498197623971053 0.781765256418521 0.12938479 0.14559007 prediction 0.563530512837041 Functional Gain - NAA60 ENSG00000263212 ncRNA_intronic Human processed_transcript chr16:3535501 chr16:3535505 . . 0 25 hm5C_associated_SNPs_103603 0 0 1 0 1 MIR6126 chr16:3535467 3'AG 3535467 Downstream 39bp
chr6 43484884 43484884 1 + C G PRAD 43484883 + 43484863 43484903 41 GCGGTGGAGGAAATGCGGAGCCGCGTGGTTCTGGGGGAGTT GCGGTGGAGGAAATGCGGAGCGGCGTGGTTCTGGGGGAGTT < 41bp 0.530507618668098 0.812266813369472 0.63325316 0.8666673 prediction 0.563518389402749 Functional Gain - POLR1C ENSG00000171453 CDS Human protein_coding chr6:43484883 chr6:43484884 nonsynonymous SNV 0.960 3 22 hm5C_associated_SNPs_103604 0 0 1 0 1 POLR1C chr6:43484916 5'GT 43484916 Upstream 33bp
chr11 67186278 67186278 1 + C G LUSC 67186277 + 67186257 67186297 41 GGCTGATGAAGGTGCCAGCACCCGGGCAGCCGGGTGAGGCA GGCTGATGAAGGTGCCAGCACGCGGGCAGCCGGGTGAGGCA < 41bp 0.543600477025722 0.825329885285315 0.35853553 0.6929924 prediction 0.563458816519187 Functional Gain - CARNS1 ENSG00000172508 CDS Human protein_coding chr11:67186277 chr11:67186278 nonsynonymous SNV 0.816 1 22 hm5C_associated_SNPs_103609 0 0 0 0 1 CARNS1 chr11:67186227 3'AG 67186227 Downstream 52bp
chr1 241912929 241912929 1 + C G rs200339413 241912925 + 241912905 241912945 41 GGGAAAGACTGGAAGGAGGACGAGCACTGCCTACGACGCCT GGGAAAGACTGGAAGGAGGACGAGGACTGCCTACGACGCCT < 41bp 0.494619880864976 0.781715979810061 0.32199278 0.58947545 prediction 0.563431959620123 Functional Gain - WDR64 ENSG00000162843 CDS Human protein_coding chr1:241912925 chr1:241912929 nonsynonymous SNV 0.052 2 25 hm5C_associated_SNPs_103611 0 0 0 0 2 WDR64 chr1:241912849 3'AG 241912849 Downstream 81bp
chr1 241912929 241912929 1 + C G rs200339413 241912925 + 241912905 241912945 41 GGGAAAGACTGGAAGGAGGACGAGCACTGCCTACGACGCCT GGGAAAGACTGGAAGGAGGACGAGGACTGCCTACGACGCCT < 41bp 0.494619880864976 0.781715979810061 0.32199278 0.58947545 prediction 0.563431959620123 Functional Gain - WDR64 ENSG00000162843 CDS Human protein_coding chr1:241912925 chr1:241912929 nonsynonymous SNV 0.052 2 25 hm5C_associated_SNPs_103611 0 0 0 0 2 WDR64 chr1:241913024 5'GT 241913024 Upstream 96bp
chr6 36982747 36982747 1 + T A STAD 36982743 + 36982723 36982763 41 TAGTAGACCCCTCTAACACCCTGCTCCGTGAGGGCCCGGTC TAGTAGACCCCTCTAACACCCTGCACCGTGAGGGCCCGGTC < 41bp 0.563395351639535 0.845083306922121 0.08366743 0.09861335 prediction 0.563375910565172 Functional Gain - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36982743 chr6:36982747 nonsynonymous SNV 0.941 4 25 hm5C_associated_SNPs_103613 0 0 0 0 1 FGD2 chr6:36982668 3'AG 36982668 Downstream 80bp
chr9 113449410 113449410 1 + C G SKCM 113449409 + 113449389 113449429 41 ACCTGCAGACTCTTTGACACCCGGTACAGCATCCGGGAGAA ACCTGCAGACTCTTTGACACCGGGTACAGCATCCGGGAGAA < 41bp 0.47858865186131 0.78167697353357 0.45128676 0.8593136 prediction 0.563353947067139 Functional Gain - MUSK ENSG00000030304 CDS Human protein_coding chr9:113449409 chr9:113449410 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_103614 0 0 0 0 1 MUSK chr9:113449397 3'AG 113449397 Downstream 14bp
chr17 21909479 21909479 1 + C G LUAD 21909478 + 21909458 21909498 41 GCCCCACGGTAGCACATTGTCCGGCAGGAGAGGAGCAGACC GCCCCACGGTAGCACATTGTCGGGCAGGAGAGGAGCAGACC < 41bp 0.510590293237973 0.792244735443427 0.7970056 0.9255848 prediction 0.563308884410909 Functional Gain - FLJ36000 ENSG00000266795 ncRNA_exonic Human other chr17:21909478 chr17:21909479 . . 0 22 hm5C_associated_SNPs_103615 0 0 0 0 1 FLJ36000 chr17:21909424 3'AG 21909424 Downstream 56bp
chr16 84812561 84812561 1 + T A COAD 84812557 + 84812537 84812577 41 ATTACACTACAGACGTCTTCCAGATCGGTCTGAATGGCTGG ATTACACTACAGACGTCTTCCAGAACGGTCTGAATGGCTGG < 41bp 0.530864266116074 0.812499633062683 0.113175064 0.057456344 prediction 0.563270733893218 Functional Gain - USP10 ENSG00000103194 CDS Human protein_coding chr16:84812557 chr16:84812561 nonsynonymous SNV 0.983 3 25 hm5C_associated_SNPs_103616 0 0 1 0 1 USP10 chr16:84812501 3'AG 84812501 Downstream 61bp
chr7 139655310 139655310 1 + C G rs138612126 139655306 + 139655286 139655326 41 GTTGCCAGCGTCGCCTTTGGCACCCCGGTGGACTCCTGGCA GTTGCCAGCGTCGCCTTTGGCACCGCGGTGGACTCCTGGCA < 41bp 0.505900308793768 0.787515898359 0.2496281 0.7034358 prediction 0.563231179130465 Functional Gain - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139655306 chr7:139655310 nonsynonymous SNV 0.813 0 25 hm5C_associated_SNPs_103619 0 0 0 0 2 TBXAS1 chr7:139655258 3'AG 139655258 Downstream 53bp
chr7 139655310 139655310 1 + C G rs138612126 139655306 + 139655286 139655326 41 GTTGCCAGCGTCGCCTTTGGCACCCCGGTGGACTCCTGGCA GTTGCCAGCGTCGCCTTTGGCACCGCGGTGGACTCCTGGCA < 41bp 0.505900308793768 0.787515898359 0.2496281 0.7034358 prediction 0.563231179130465 Functional Gain - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139655306 chr7:139655310 nonsynonymous SNV 0.813 0 25 hm5C_associated_SNPs_103619 0 0 0 0 2 TBXAS1 chr7:139655406 5'GT 139655406 Upstream 97bp
chr10 102826237 102826237 1 + C A rs576643418 102826233 + 102826213 102826253 41 AAGCGGGCGGCCCTAGGAGCCGCGCACAACAGCGCAAGCGG AAGCGGGCGGCCCTAGGAGCCGCGAACAACAGCGCAAGCGG < 41bp 0.588902632817974 0.870501857321775 0.40524998 0.6409736 prediction 0.563198449007602 Functional Gain - KAZALD1 ENSG00000107821 downstream Human protein_coding chr10:102826233 chr10:102826237 . . 0 25 hm5C_associated_SNPs_103622 0 0 0 0 1 KAZALD1 chr10:102826305 5'GT 102826305 Upstream 69bp
chr21 45858978 45858978 1 + C A UCEC 45858974 + 45858954 45858994 41 CCCGGGAGCCAGGGGAGATGCTACCTCGGAAGCTGAAGCGG CCCGGGAGCCAGGGGAGATGCTACATCGGAAGCTGAAGCGG < 41bp 0.367980249647295 0.781536553022542 0.87312615 0.93475604 prediction 0.563073106045083 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45858974 chr21:45858978 nonsynonymous SNV 0.762 4 25 hm5C_associated_SNPs_103626 0 0 0 0 2 TRPM2 chr21:45858950 3'AG 45858950 Downstream 29bp
chr21 45858978 45858978 1 + C A UCEC 45858974 + 45858954 45858994 41 CCCGGGAGCCAGGGGAGATGCTACCTCGGAAGCTGAAGCGG CCCGGGAGCCAGGGGAGATGCTACATCGGAAGCTGAAGCGG < 41bp 0.367980249647295 0.781536553022542 0.87312615 0.93475604 prediction 0.563073106045083 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45858974 chr21:45858978 nonsynonymous SNV 0.762 4 25 hm5C_associated_SNPs_103626 0 0 0 0 2 TRPM2 chr21:45859051 5'GT 45859051 Upstream 74bp
chr16 20911758 20911758 1 + C A rs192628920 20911754 + 20911734 20911774 41 CATCATCACTTCCGGTAACCCCGCCGGCCGCCAGCTCCAGG CATCATCACTTCCGGTAACCCCGCAGGCCGCCAGCTCCAGG < 41bp 0.606836105799617 0.888356879590918 0.2779073 0.1628195 prediction 0.563041547582603 Functional Gain - LYRM1 ENSG00000102897 UTR5 Human protein_coding chr16:20911754 chr16:20911758 . . 0 25 hm5C_associated_SNPs_103630 0 0 0 0 1 LYRM1 chr16:20911857 5'GT 20911857 Upstream 100bp
chr19 19168318 19168318 1 + C A BRCA 19168314 + 19168294 19168334 41 CTGGGGGCTGAGGCACTCATCATGCAGGCCCGATCTGCCCA CTGGGGGCTGAGGCACTCATCATGAAGGCCCGATCTGCCCA < 41bp 0.615188149077061 0.89669063424129 0.2513091 0.38656664 prediction 0.563004970328458 Functional Gain - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19168314 chr19:19168318 nonsynonymous SNV 0.017 0 25 hm5C_associated_SNPs_103633 0 0 1 0 1 ARMC6 chr19:19168225 3'AG 19168225 Downstream 94bp
chr12 101436184 101436184 1 + T A LUSC 101436180 + 101436160 101436200 41 GTACACCGGCATGCTCTTCCCAGCTGCCTTCATTGGATTGT GTACACCGGCATGCTCTTCCCAGCAGCCTTCATTGGATTGT < 41bp 0.472338304456818 0.781496459153532 0.5667995 0.574413 prediction 0.562992918307065 Functional Gain - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101436180 chr12:101436184 synonymous SNV . 0 25 hm5C_associated_SNPs_103634 0 0 0 0 2 ANO4 chr12:101436112 3'AG 101436112 Downstream 73bp
chr12 101436184 101436184 1 + T A LUSC 101436180 + 101436160 101436200 41 GTACACCGGCATGCTCTTCCCAGCTGCCTTCATTGGATTGT GTACACCGGCATGCTCTTCCCAGCAGCCTTCATTGGATTGT < 41bp 0.472338304456818 0.781496459153532 0.5667995 0.574413 prediction 0.562992918307065 Functional Gain - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101436180 chr12:101436184 synonymous SNV . 0 25 hm5C_associated_SNPs_103634 0 0 0 0 2 ANO4 chr12:101436246 5'GT 101436246 Upstream 63bp
chr21 45826547 45826547 1 + C A GBM 45826543 + 45826523 45826563 41 TGTCCTTCGGGGTGGCCAAGCAGGCCATCCTCATCCACAAC TGTCCTTCGGGGTGGCCAAGCAGGACATCCTCATCCACAAC < 41bp 0.614525286078753 0.895971858898983 0.8136578 0.7769923 prediction 0.56289314564046 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45826543 chr21:45826547 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_103638 0 0 0 0 1 TRPM2 chr21:45826477 3'AG 45826477 Downstream 71bp
chr1 15766823 15766823 1 + C G rs533967597 15766822 + 15766802 15766842 41 GCTGTGGGGTGCCCAGCTTCCCGCCCAACCTATCCGCCCGA GCTGTGGGGTGCCCAGCTTCCGGCCCAACCTATCCGCCCGA < 41bp 0.53464138480221 0.816084309191802 0.14276528 0.39870924 prediction 0.562885848779182 Functional Gain - CTRC ENSG00000162438 CDS Human protein_coding chr1:15766822 chr1:15766823 nonsynonymous SNV 0.360 1 22 hm5C_associated_SNPs_103639 0 0 0 0 2 CTRC chr1:15766796 3'AG 15766796 Downstream 28bp
chr1 15766823 15766823 1 + C G rs533967597 15766822 + 15766802 15766842 41 GCTGTGGGGTGCCCAGCTTCCCGCCCAACCTATCCGCCCGA GCTGTGGGGTGCCCAGCTTCCGGCCCAACCTATCCGCCCGA < 41bp 0.53464138480221 0.816084309191802 0.14276528 0.39870924 prediction 0.562885848779182 Functional Gain - CTRC ENSG00000162438 CDS Human protein_coding chr1:15766822 chr1:15766823 nonsynonymous SNV 0.360 1 22 hm5C_associated_SNPs_103639 0 0 0 0 2 CTRC chr1:15766887 5'GT 15766887 Upstream 65bp
chr5 169025560 169025560 1 + T G OV 169025558 + 169025538 169025578 41 ACACCTATTATACAGATTTACTTCAGATGAAGCTGGATAAC ACACCTATTATACAGATTTACTGCAGATGAAGCTGGATAAC < 41bp 0.546237830790503 0.827655279761013 0.07819641 0.113161 prediction 0.562834897941021 Functional Gain - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169025558 chr5:169025560 synonymous SNV . 0 23 hm5C_associated_SNPs_103640 0 0 1 0 2 SPDL1 chr5:169025480 3'AG 169025480 Downstream 81bp
chr5 169025560 169025560 1 + T G OV 169025558 + 169025538 169025578 41 ACACCTATTATACAGATTTACTTCAGATGAAGCTGGATAAC ACACCTATTATACAGATTTACTGCAGATGAAGCTGGATAAC < 41bp 0.546237830790503 0.827655279761013 0.07819641 0.113161 prediction 0.562834897941021 Functional Gain - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169025558 chr5:169025560 synonymous SNV . 0 23 hm5C_associated_SNPs_103640 0 0 1 0 2 SPDL1 chr5:169025583 5'GT 169025583 Upstream 24bp
chr20 4705274 4705274 1 + C A rs41279424 4705270 + 4705250 4705290 41 TCAGCCACCTCTCTGCGGTCCAGACGAGGGGCATCAAGCAC TCAGCCACCTCTCTGCGGTCCAGAAGAGGGGCATCAAGCAC < 41bp 0.615201940449818 0.896616228337637 0.28729945 0.34944648 prediction 0.562828575775639 Functional Gain - PRND ENSG00000171864 CDS Human protein_coding chr20:4705270 chr20:4705274 nonsynonymous SNV 0.027 2 25 hm5C_associated_SNPs_103641 0 0 0 0 1 PRND chr20:4705187 3'AG 4705187 Downstream 88bp
chr2 9621568 9621568 1 + T G UCEC 9621566 + 9621546 9621586 41 ACAGCCTGGGAAGAACAGTGCATCATACAAGGTAAACAAAC ACAGCCTGGGAAGAACAGTGCAGCATACAAGGTAAACAAAC < 41bp 0.47399759500399 0.781377543133122 0.36323982 0.54915136 prediction 0.562755086266245 Functional Gain - IAH1 ENSG00000134330 CDS Human protein_coding chr2:9621566 chr2:9621568 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_103644 0 0 1 0 1 IAH1 chr2:9621576 5'GT 9621576 Upstream 9bp
chr19 17394124 17394124 1 + T G rs2363956 17394122 + 17394102 17394142 41 GGTGACAACAGGGACATTGGCTTGGAGGCTGACCCAGGACC GGTGACAACAGGGACATTGGCTGGGAGGCTGACCCAGGACC < 41bp 0.564307650595965 0.84567833569232 0.093092054 0.6414243 prediction 0.56274137019271 Functional Gain - ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17394122 chr19:17394124 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_103645 0 1 0 0 1 ANKLE1 chr19:17394034 3'AG 17394034 Downstream 91bp
chr1 11586834 11586834 1 + C A rs374613319 11586830 + 11586810 11586850 41 ACGACCTTGGCCTGTGATGCCAAGCGGGGCTGGAAGTTTGA ACGACCTTGGCCTGTGATGCCAAGAGGGGCTGGAAGTTTGA < 41bp 0.377413023659855 0.781343844220686 0.16976345 0.36276072 prediction 0.562687688441371 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11586830 chr1:11586834 synonymous SNV . 0 25 hm5C_associated_SNPs_103646 0 0 0 0 1 DISP3 chr1:11586892 5'GT 11586892 Upstream 59bp
chr1 33959192 33959192 1 + T G ESCA 33959190 + 33959170 33959210 41 GATGCTGTCAAACCTTCAACCTTGTGTCCTAAAGCCCCAGA GATGCTGTCAAACCTTCAACCTGGTGTCCTAAAGCCCCAGA < 41bp 0.445615484334701 0.781340394616105 0.07358816 0.22505182 prediction 0.562680789232211 Functional Gain - ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33959190 chr1:33959192 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_103648 0 0 1 0 1 ZSCAN20 chr1:33959215 5'GT 33959215 Upstream 24bp
chr1 149755799 149755799 1 + T A LIHC 149755795 + 149755775 149755815 41 CAGGGCGAAGTGACCCCATACAGCTGGAAATCCACAGAGGT CAGGGCGAAGTGACCCCATACAGCAGGAAATCCACAGAGGT < 41bp 0.548731037060439 0.830057087171938 0.4623405 0.4308265 prediction 0.562652100222999 Functional Gain - FCGR1A ENSG00000150337 CDS Human protein_coding chr1:149755795 chr1:149755799 nonsynonymous SNV 0.907 3 25 hm5C_associated_SNPs_103649 0 0 0 1 1 FCGR1A chr1:149755813 5'GT 149755813 Upstream 15bp
chr11 118827694 118827694 1 + C A UCEC 118827690 + 118827670 118827710 41 CACCTCACAGGAGGCAATGCCACACTGATGGTCCGGAGAGC CACCTCACAGGAGGCAATGCCACAATGATGGTCCGGAGAGC < 41bp 0.362644793393012 0.781288277109139 0.28914738 0.35235226 prediction 0.562576554218277 Functional Gain - UPK2 ENSG00000110375 CDS Human protein_coding chr11:118827690 chr11:118827694 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_103653 0 0 0 0 1 UPK2 chr11:118827724 5'GT 118827724 Upstream 31bp
chr8 30969283 30969283 1 + T G rs2230011 30969281 + 30969261 30969301 41 GGCGAAAAACAGGGAATATCCTTCAGGATCTGCAGCCATTT GGCGAAAAACAGGGAATATCCTGCAGGATCTGCAGCCATTT < 41bp 0.544020244106751 0.825265651194574 0.07963386 0.16670987 prediction 0.562490814175647 Functional Gain - WRN ENSG00000165392 CDS Human protein_coding chr8:30969281 chr8:30969283 synonymous SNV . 0 23 hm5C_associated_SNPs_103658 1 0 1 0 1 WRN chr8:30969315 5'GT 30969315 Upstream 33bp
chr14 73637738 73637738 1 + C G rs139863395 73637737 + 73637717 73637757 41 TAAGTCAGTCAGCTTTTATACCCGGAAGGATGGGCAGCTGT TAAGTCAGTCAGCTTTTATACGCGGAAGGATGGGCAGCTGT < 41bp 0.5194986096968 0.800740836352858 0.09214467 0.28384042 prediction 0.562484453312116 Functional Gain - PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637737 chr14:73637738 synonymous SNV . 0 22 hm5C_associated_SNPs_103659 0 0 1 1 1 PSEN1 chr14:73637755 5'GT 73637755 Upstream 18bp
chr9 133750392 133750392 1 + C G CESC 133750391 + 133750371 133750411 41 TCCCCATCAAATGGACTGCACCCGAGAGCCTGGCCTACAAC TCCCCATCAAATGGACTGCACGCGAGAGCCTGGCCTACAAC < 41bp 0.470257223712193 0.781240264335169 0.35860598 0.7576735 prediction 0.562480528670339 Functional Gain - ABL1 ENSG00000097007 CDS Human protein_coding chr9:133750391 chr9:133750392 nonsynonymous SNV 0.983 5 22 hm5C_associated_SNPs_103660 0 0 1 0 1 ABL1 chr9:133750439 5'GT 133750439 Upstream 48bp
chr11 61724453 61724453 1 + C A rs74653691 61724449 + 61724429 61724469 41 GGTCGAATCCGGGACCCTATCCTGCTCCAGAGCCTGCTGAA GGTCGAATCCGGGACCCTATCCTGATCCAGAGCCTGCTGAA < 41bp 0.399811766823112 0.781228541491303 0.030604959 0.3380943 prediction 0.562457082982607 Functional Gain - BEST1 ENSG00000167995 CDS Human protein_coding chr11:61724449 chr11:61724453 nonsynonymous SNV 0.979 5 25 hm5C_associated_SNPs_103661 5 0 0 1 1 BEST1 chr11:61724470 5'GT 61724470 Upstream 18bp
chr10 54074421 54074421 1 + C A LIHC 54074417 + 54074397 54074437 41 ACCCGGGCGGGAATAAGTACCAGACCATTGACAACTACCAG ACCCGGGCGGGAATAAGTACCAGAACATTGACAACTACCAG < 41bp 0.616991156726915 0.898212507703693 0.6158917 0.8148296 prediction 0.562442701953555 Functional Gain - DKK1 ENSG00000107984 CDS Human protein_coding chr10:54074417 chr10:54074421 nonsynonymous SNV 0.619 0 25 hm5C_associated_SNPs_103663 0 0 1 0 1 DKK1 chr10:54074437 5'GT 54074437 Upstream 17bp
chr18 61449736 61449736 1 + T A LGG 61449732 + 61449712 61449752 41 TTCGCTGCCCTGGCCCTGGTCCGCTTGGGCGCTCAAGATGA TTCGCTGCCCTGGCCCTGGTCCGCATGGGCGCTCAAGATGA < 41bp 0.453980612716424 0.781201605688878 0.16817263 0.20396742 prediction 0.562403211377755 Functional Gain - SERPINB7 ENSG00000166396 CDS Human protein_coding chr18:61449732 chr18:61449736 nonsynonymous SNV 0.357 2 25 hm5C_associated_SNPs_103664 0 0 0 0 1 SERPINB7 chr18:61449774 5'GT 61449774 Upstream 39bp
chr11 64367861 64367861 1 + C A UCEC 64367857 + 64367837 64367877 41 AGAAATGGGGGCTCTGCGCTCAGCCTTGGCCGTGCTGGGGC AGAAATGGGGGCTCTGCGCTCAGCATTGGCCGTGCTGGGGC < 41bp 0.618955359653336 0.900151094405541 0.7420921 0.7352392 prediction 0.562391469504408 Functional Gain - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64367857 chr11:64367861 synonymous SNV . 0 25 hm5C_associated_SNPs_103665 0 0 0 0 2 SLC22A12 chr11:64367839 3'AG 64367839 Downstream 23bp
chr11 64367861 64367861 1 + C A UCEC 64367857 + 64367837 64367877 41 AGAAATGGGGGCTCTGCGCTCAGCCTTGGCCGTGCTGGGGC AGAAATGGGGGCTCTGCGCTCAGCATTGGCCGTGCTGGGGC < 41bp 0.618955359653336 0.900151094405541 0.7420921 0.7352392 prediction 0.562391469504408 Functional Gain - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64367857 chr11:64367861 synonymous SNV . 0 25 hm5C_associated_SNPs_103665 0 0 0 0 2 SLC22A12 chr11:64367947 5'GT 64367947 Upstream 87bp
chr3 186358472 186358472 1 + C A rs182506996 186358468 + 186358448 186358488 41 GTGAACGACGCCCAGGAATACAGACGGGCAAGTAGGGACAG GTGAACGACGCCCAGGAATACAGAAGGGCAAGTAGGGACAG < 41bp 0.618328219005168 0.899518859170292 0.47104034 0.44069594 prediction 0.562381280330248 Functional Gain - FETUB ENSG00000090512 CDS Human protein_coding chr3:186358468 chr3:186358472 synonymous SNV . 0 25 hm5C_associated_SNPs_103666 0 0 0 0 1 FETUB chr3:186358478 5'GT 186358478 Upstream 7bp
chr3 129247931 129247931 1 + C A LUAD 129247927 + 129247907 129247947 41 AATTTGGAGGGCTTCTTTGCCACCCTGGGCGGTATGAGCCG AATTTGGAGGGCTTCTTTGCCACCATGGGCGGTATGAGCCG < 41bp 0.618010664929939 0.899200056977572 0.3294243 0.50091153 prediction 0.562378784095267 Functional Gain - RHO ENSG00000163914 CDS Human protein_coding chr3:129247927 chr3:129247931 nonsynonymous SNV 0.983 2 25 hm5C_associated_SNPs_103668 0 0 0 0 1 RHO chr3:129247937 5'GT 129247937 Upstream 7bp
chr13 96205164 96205164 1 + T G SKCM 96205162 + 96205142 96205182 41 TTGGGCCAACCTGTGGAAGGCGTGCGTTACCGACTCCACGG TTGGGCCAACCTGTGGAAGGCGGGCGTTACCGACTCCACGG < 41bp 0.574283469907319 0.8554674622158 0.4668326 0.9434403 prediction 0.562367984616962 Functional Gain - CLDN10 ENSG00000134873 CDS Human protein_coding chr13:96205162 chr13:96205164 nonsynonymous SNV 0.947 5 23 hm5C_associated_SNPs_103670 0 0 0 0 1 CLDN10 chr13:96205227 5'GT 96205227 Upstream 64bp
chr20 31628100 31628100 1 + T A rs73904431 31628096 + 31628076 31628116 41 AGTACTCAGTGCATGAGAACCAGCTGCAGATGGCCACTTCT AGTACTCAGTGCATGAGAACCAGCAGCAGATGGCCACTTCT < 41bp 0.55367614705844 0.834841517503492 0.8396039 0.61983347 prediction 0.562330740890103 Functional Gain - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31628096 chr20:31628100 nonsynonymous SNV 0.988 3 25 hm5C_associated_SNPs_103671 0 0 0 0 2 BPIFB6 chr20:31628057 3'AG 31628057 Downstream 44bp
chr20 31628100 31628100 1 + T A rs73904431 31628096 + 31628076 31628116 41 AGTACTCAGTGCATGAGAACCAGCTGCAGATGGCCACTTCT AGTACTCAGTGCATGAGAACCAGCAGCAGATGGCCACTTCT < 41bp 0.55367614705844 0.834841517503492 0.8396039 0.61983347 prediction 0.562330740890103 Functional Gain - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31628096 chr20:31628100 nonsynonymous SNV 0.988 3 25 hm5C_associated_SNPs_103671 0 0 0 0 2 BPIFB6 chr20:31628124 5'GT 31628124 Upstream 25bp
chr7 12668813 12668813 1 + T G ESCA 12668810 + 12668790 12668830 41 GTGGTGACTGCTACATCATACTCTACACCTATCCCAGAGGA GTGGTGACTGCTACATCATACTCGACACCTATCCCAGAGGA < 41bp 0.412571747949139 0.781161697647874 0.50074863 0.34476954 prediction 0.562323395295748 Functional Gain - SCIN ENSG00000006747 CDS Human protein_coding chr7:12668810 chr7:12668813 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_103672 0 0 1 2 2 SCIN chr7:12668726 3'AG 12668726 Downstream 88bp
chr7 12668813 12668813 1 + T G ESCA 12668810 + 12668790 12668830 41 GTGGTGACTGCTACATCATACTCTACACCTATCCCAGAGGA GTGGTGACTGCTACATCATACTCGACACCTATCCCAGAGGA < 41bp 0.412571747949139 0.781161697647874 0.50074863 0.34476954 prediction 0.562323395295748 Functional Gain - SCIN ENSG00000006747 CDS Human protein_coding chr7:12668810 chr7:12668813 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_103672 0 0 1 2 2 SCIN chr7:12668847 5'GT 12668847 Upstream 35bp
chr2 27729424 27729424 1 + C A UCEC 27729420 + 27729400 27729440 41 AGCCAAAGCCCCAAGATTGCCACCCTGATGAAGAGTGTCAG AGCCAAAGCCCCAAGATTGCCACCATGATGAAGAGTGTCAG < 41bp 0.348969748410425 0.781141434365896 0.06354499 0.045356095 prediction 0.562282868731792 Functional Gain - GCKR ENSG00000084734 CDS Human protein_coding chr2:27729420 chr2:27729424 nonsynonymous SNV 0.102 3 25 hm5C_associated_SNPs_103673 0 0 1 0 2 GCKR chr2:27729348 3'AG 27729348 Downstream 77bp
chr2 27729424 27729424 1 + C A UCEC 27729420 + 27729400 27729440 41 AGCCAAAGCCCCAAGATTGCCACCCTGATGAAGAGTGTCAG AGCCAAAGCCCCAAGATTGCCACCATGATGAAGAGTGTCAG < 41bp 0.348969748410425 0.781141434365896 0.06354499 0.045356095 prediction 0.562282868731792 Functional Gain - GCKR ENSG00000084734 CDS Human protein_coding chr2:27729420 chr2:27729424 nonsynonymous SNV 0.102 3 25 hm5C_associated_SNPs_103673 0 0 1 0 2 GCKR chr2:27729446 5'GT 27729446 Upstream 23bp
chr1 11715921 11715921 1 + C A COAD 11715917 + 11715897 11715937 41 CTGTGGGGAACATCAACGAGCTGCCCGAGAACATCCTGCTG CTGTGGGGAACATCAACGAGCTGCACGAGAACATCCTGCTG < 41bp 0.371377340396037 0.781096291374183 0.083889455 0.21330231 prediction 0.562192582748366 Functional Gain - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11715917 chr1:11715921 nonsynonymous SNV 0.973 5 25 hm5C_associated_SNPs_103676 0 0 0 0 1 FBXO44 chr1:11715863 3'AG 11715863 Downstream 59bp
chr16 88780603 88780603 1 + C G rs73262673 88780602 + 88780582 88780622 41 CTTCATCCTCAGGCTGCAGACCCAGTTCCCCTCCACTGTCA CTTCATCCTCAGGCTGCAGACGCAGTTCCCCTCCACTGTCA < 41bp 0.471154202332558 0.781087698489016 0.044481993 0.2593413 prediction 0.562175396978033 Functional Gain - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88780602 chr16:88780603 synonymous SNV . 0 22 hm5C_associated_SNPs_103678 0 0 1 0 2 CTU2 chr16:88780544 3'AG 88780544 Downstream 60bp
chr16 88780603 88780603 1 + C G rs73262673 88780602 + 88780582 88780622 41 CTTCATCCTCAGGCTGCAGACCCAGTTCCCCTCCACTGTCA CTTCATCCTCAGGCTGCAGACGCAGTTCCCCTCCACTGTCA < 41bp 0.471154202332558 0.781087698489016 0.044481993 0.2593413 prediction 0.562175396978033 Functional Gain - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88780602 chr16:88780603 synonymous SNV . 0 22 hm5C_associated_SNPs_103678 0 0 1 0 2 CTU2 chr16:88780635 5'GT 88780635 Upstream 33bp
chr19 3435102 3435102 1 + C G rs565638062 3435098 + 3435078 3435118 41 AAGGAGCAAGCGGCACAAATCGGGCTCGATGGAGGAAGACG AAGGAGCAAGCGGCACAAATCGGGGTCGATGGAGGAAGACG < 41bp 0.515053245943659 0.796126469011453 0.91007316 0.9354439 prediction 0.562146446135588 Functional Gain - NFIC ENSG00000141905 CDS Human protein_coding chr19:3435098 chr19:3435102 synonymous SNV . 0 25 hm5C_associated_SNPs_103680 0 0 1 0 1 NFIC chr19:3435081 3'AG 3435081 Downstream 22bp
chr3 50231296 50231296 1 + T G LUSC 50231294 + 50231274 50231314 41 ATCATCGAGACGCAGTTCTCCTTCAAGGATCTCAACTTCCG ATCATCGAGACGCAGTTCTCCTGCAAGGATCTCAACTTCCG < 41bp 0.451661356542809 0.781071819605604 0.016256303 0.038035482 prediction 0.562143639211207 Functional Gain - GNAT1 ENSG00000114349 CDS Human protein_coding chr3:50231294 chr3:50231296 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_103681 0 0 0 0 1 GNAT1 chr3:50231314 5'GT 50231314 Upstream 19bp
chr10 43615061 43615061 1 + C A LUAD 43615057 + 43615037 43615077 41 CGAGAGCCGCAAAGTGGGGCCTGGCTACCTGGGCAGTGGAG CGAGAGCCGCAAAGTGGGGCCTGGATACCTGGGCAGTGGAG < 41bp 0.378229081021385 0.781060172092204 0.23880616 0.40814412 prediction 0.562120344184409 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43615057 chr10:43615061 synonymous SNV . 0 25 hm5C_associated_SNPs_103682 0 0 0 0 1 RET chr10:43614979 3'AG 43614979 Downstream 83bp
chr19 15791066 15791066 1 + C G rs61731193 15791065 + 15791045 15791085 41 TCATGTCAGCTGCCATTGCACCCAAGGATAATCTCTTCATC TCATGTCAGCTGCCATTGCACGCAAGGATAATCTCTTCATC < 41bp 0.551297849099009 0.832325920884927 0.022039503 0.047946602 prediction 0.562056143571838 Functional Gain - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15791065 chr19:15791066 nonsynonymous SNV 0.008 3 22 hm5C_associated_SNPs_103686 0 0 1 0 2 CYP4F12 chr19:15791054 3'AG 15791054 Downstream 13bp
chr19 15791066 15791066 1 + C G rs61731193 15791065 + 15791045 15791085 41 TCATGTCAGCTGCCATTGCACCCAAGGATAATCTCTTCATC TCATGTCAGCTGCCATTGCACGCAAGGATAATCTCTTCATC < 41bp 0.551297849099009 0.832325920884927 0.022039503 0.047946602 prediction 0.562056143571838 Functional Gain - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15791065 chr19:15791066 nonsynonymous SNV 0.008 3 22 hm5C_associated_SNPs_103686 0 0 1 0 2 CYP4F12 chr19:15791107 5'GT 15791107 Upstream 42bp
chr1 11249940 11249940 1 + T A rs532498579 11249936 + 11249916 11249956 41 CGGCTCACAGATGCTGAGAGCAAGTACTCCGAGATGAACAA CGGCTCACAGATGCTGAGAGCAAGAACTCCGAGATGAACAA < 41bp 0.477516518266761 0.780958013264183 0.91155434 0.82278395 prediction 0.561916026528367 Functional Gain - ANGPTL7 ENSG00000171819 CDS Human protein_coding chr1:11249936 chr1:11249940 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_103693 0 0 0 0 1 ANGPTL7 chr1:11250012 5'GT 11250012 Upstream 73bp
chr1 28861871 28861871 1 + C G SKCM 28861870 + 28861850 28861890 41 GTGCCTGAGTTATTTGCCAACCGTGGTGGCCGGCAAGGCCT GTGCCTGAGTTATTTGCCAACGGTGGTGGCCGGCAAGGCCT < 41bp 0.470249892687986 0.780914844882288 0.57508683 0.8852869 prediction 0.561829689764575 Functional Gain - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28861870 chr1:28861871 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_103700 0 0 1 0 1 RCC1 chr1:28861892 5'GT 28861892 Upstream 22bp
chr17 30815055 30815055 1 + C A CESC 30815051 + 30815031 30815071 41 TGCCGTCACCTCCGCAGGGACGCCCAAACGGGTCATCGTCC TGCCGTCACCTCCGCAGGGACGCCAAAACGGGTCATCGTCC < 41bp 0.364775894161868 0.78090392804005 0.09975994 0.7399523 prediction 0.561807856080101 Functional Gain - CDK5R1 ENSG00000176749 CDS Human protein_coding chr17:30815051 chr17:30815055 synonymous SNV . 0 25 hm5C_associated_SNPs_103703 0 0 0 0 1 CDK5R1 chr17:30815104 5'GT 30815104 Upstream 50bp
chr2 219300110 219300110 1 + C A rs61733654 219300106 + 219300086 219300126 41 GGTGGAAGGGCAGGAGCCAGCCAACTTCTGGATGGCCCTGG GGTGGAAGGGCAGGAGCCAGCCAAATTCTGGATGGCCCTGG < 41bp 0.381601119330371 0.780832781794791 0.27320102 0.7230979 prediction 0.561665563589581 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219300106 chr2:219300110 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_103709 0 0 1 0 1 VIL1 chr2:219300157 5'GT 219300157 Upstream 48bp
chr11 126110771 126110771 1 + C G SKCM 126110770 + 126110750 126110790 41 CATTAGTGCTGCAGTTGCGCCCCAAGTTCCAGCCCTCAAAT CATTAGTGCTGCAGTTGCGCCGCAAGTTCCAGCCCTCAAAT < 41bp 0.537484214721387 0.818311272267007 0.058051765 0.20344171 prediction 0.56165411509124 Functional Gain - FAM118B ENSG00000197798 CDS Human protein_coding chr11:126110770 chr11:126110771 synonymous SNV . 0 22 hm5C_associated_SNPs_103710 0 0 0 0 1 FAM118B chr11:126110687 3'AG 126110687 Downstream 85bp
chr2 113676187 113676187 1 + C A rs144279173 113676183 + 113676163 113676203 41 CCCAAAAGGAATCAGCACGCCGGCCCTTCATCTTTTATAGG CCCAAAAGGAATCAGCACGCCGGCACTTCATCTTTTATAGG < 41bp 0.385618871046162 0.7808181922492 0.033418775 0.05072698 prediction 0.5616363844984 Functional Gain - IL37 ENSG00000125571 CDS Human protein_coding chr2:113676183 chr2:113676187 nonsynonymous SNV 0.034 3 25 hm5C_associated_SNPs_103711 0 0 0 0 1 IL37 chr2:113676138 3'AG 113676138 Downstream 50bp
chr2 234737372 234737372 1 + C A rs7564261 234737368 + 234737348 234737388 41 GACCAGGAGGAAGACGAGGCCCTGCGGGTGCTGTCCCTGCG GACCAGGAGGAAGACGAGGCCCTGAGGGTGCTGTCCCTGCG < 41bp 0.438501717951723 0.780816935126207 0.40834224 0.3166002 prediction 0.561633870252414 Functional Gain - MROH2A ENSG00000185038 CDS Human protein_coding chr2:234737368 chr2:234737372 synonymous SNV . 0 25 hm5C_associated_SNPs_103712 0 0 0 0 1 MROH2A chr2:234737425 5'GT 234737425 Upstream 54bp
chr19 11558430 11558430 1 + C G LUSC 11558429 + 11558409 11558449 41 CGAGGTGCAGGGGGAGCAGCCCAAGGTCCGTGTTTGGGGGA CGAGGTGCAGGGGGAGCAGCCGAAGGTCCGTGTTTGGGGGA < 41bp 0.480312920985371 0.78079492256412 0.86380625 0.87077487 prediction 0.56158984512824 Functional Gain - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11558429 chr19:11558430 synonymous SNV . 0 22 hm5C_associated_SNPs_103714 0 0 1 0 1 PRKCSH chr19:11558433 5'GT 11558433 Upstream 4bp
chr11 65617417 65617417 1 + C G rs370896235 65617416 + 65617396 65617436 41 CCTCCCTCACTTCGCCCAGACCGAGTTCTCAGTCGTGCGGC CCTCCCTCACTTCGCCCAGACGGAGTTCTCAGTCGTGCGGC < 41bp 0.465023051281918 0.780759903748271 0.2941644 0.8270347 prediction 0.561519807496541 Functional Gain - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65617416 chr11:65617417 synonymous SNV . 0 22 hm5C_associated_SNPs_103715 0 0 0 2 2 SNX32 chr11:65617391 3'AG 65617391 Downstream 27bp
chr11 65617417 65617417 1 + C G rs370896235 65617416 + 65617396 65617436 41 CCTCCCTCACTTCGCCCAGACCGAGTTCTCAGTCGTGCGGC CCTCCCTCACTTCGCCCAGACGGAGTTCTCAGTCGTGCGGC < 41bp 0.465023051281918 0.780759903748271 0.2941644 0.8270347 prediction 0.561519807496541 Functional Gain - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65617416 chr11:65617417 synonymous SNV . 0 22 hm5C_associated_SNPs_103715 0 0 0 2 2 SNX32 chr11:65617501 5'GT 65617501 Upstream 85bp
chr3 108568089 108568089 1 + C G LUSC 108568088 + 108568068 108568108 41 AAATAAGATGCAGGAAGCCACCCCATCTGCACAGGTGAGTT AAATAAGATGCAGGAAGCCACGCCATCTGCACAGGTGAGTT < 41bp 0.499745633758425 0.780750219142252 0.012364984 0.056955576 prediction 0.561500438284504 Functional Gain - TRAT1 ENSG00000163519 CDS Human protein_coding chr3:108568088 chr3:108568089 synonymous SNV . 0 22 hm5C_associated_SNPs_103716 0 0 0 0 2 TRAT1 chr3:108568013 3'AG 108568013 Downstream 77bp
chr3 108568089 108568089 1 + C G LUSC 108568088 + 108568068 108568108 41 AAATAAGATGCAGGAAGCCACCCCATCTGCACAGGTGAGTT AAATAAGATGCAGGAAGCCACGCCATCTGCACAGGTGAGTT < 41bp 0.499745633758425 0.780750219142252 0.012364984 0.056955576 prediction 0.561500438284504 Functional Gain - TRAT1 ENSG00000163519 CDS Human protein_coding chr3:108568088 chr3:108568089 synonymous SNV . 0 22 hm5C_associated_SNPs_103716 0 0 0 0 2 TRAT1 chr3:108568101 5'GT 108568101 Upstream 13bp
chr19 1046335 1046335 1 + C A LUAD 1046331 + 1046311 1046351 41 GTGGAGCGTGCAGCCGTCCGCGTGCTCAGCGGCGCCAACCC GTGGAGCGTGCAGCCGTCCGCGTGATCAGCGGCGCCAACCC < 41bp 0.400050705225787 0.780740307682846 0.8585334 0.9024912 prediction 0.561480615365693 Functional Gain - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1046331 chr19:1046335 nonsynonymous SNV 0.354 1 25 hm5C_associated_SNPs_103717 0 0 1 0 1 ABCA7 chr19:1046405 5'GT 1046405 Upstream 71bp
chr8 10383152 10383152 1 + T G LUAD 10383149 + 10383129 10383169 41 CTGGTCACGGGAACTCAGCTCGGTCCACGGACTCCTCTCCC CTGGTCACGGGAACTCAGCTCGGGCCACGGACTCCTCTCCC < 41bp 0.390891645052432 0.780734560684614 0.41160285 0.82862926 prediction 0.561469121369228 Functional Gain - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10383149 chr8:10383152 synonymous SNV . 0 24 hm5C_associated_SNPs_103718 0 0 0 0 1 PRSS55 chr8:10383249 5'GT 10383249 Upstream 98bp
chr1 161736177 161736177 1 + C A HNSC 161736173 + 161736153 161736193 41 GGGGGAGCCGGCTGGGGTTGCCGGCACCATGGAGTCACCTT GGGGGAGCCGGCTGGGGTTGCCGGAACCATGGAGTCACCTT < 41bp 0.41768295560164 0.780729244383642 0.80017 0.89821947 prediction 0.561458488767283 Functional Gain - ATF6 ENSG00000118217 CDS Human protein_coding chr1:161736173 chr1:161736177 synonymous SNV . 0 25 hm5C_associated_SNPs_103719 0 0 1 0 1 ATF6 chr1:161736232 5'GT 161736232 Upstream 56bp
chr1 2426346 2426346 1 + C G rs567604431 2426342 + 2426322 2426362 41 GGGGAGGATGCCGGGGCCAGCAGACGCAATGGCCGCCTCGT GGGGAGGATGCCGGGGCCAGCAGAGGCAATGGCCGCCTCGT < 41bp 0.490627188081784 0.780720945663119 0.9117203 0.92149514 prediction 0.561441891326237 Functional Gain - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2426342 chr1:2426346 nonsynonymous SNV 0.015 1 25 hm5C_associated_SNPs_103720 0 0 0 0 2 PLCH2 chr1:2426295 3'AG 2426295 Downstream 52bp
chr1 2426346 2426346 1 + C G rs567604431 2426342 + 2426322 2426362 41 GGGGAGGATGCCGGGGCCAGCAGACGCAATGGCCGCCTCGT GGGGAGGATGCCGGGGCCAGCAGAGGCAATGGCCGCCTCGT < 41bp 0.490627188081784 0.780720945663119 0.9117203 0.92149514 prediction 0.561441891326237 Functional Gain - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2426342 chr1:2426346 nonsynonymous SNV 0.015 1 25 hm5C_associated_SNPs_103720 0 0 0 0 2 PLCH2 chr1:2426387 5'GT 2426387 Upstream 42bp
chr1 169076073 169076073 1 + C G BRCA 169076072 + 169076052 169076092 41 CTGACCCGCCATCGCCATGGCCCGCGGGAAAGCCAAGGAGG CTGACCCGCCATCGCCATGGCGCGCGGGAAAGCCAAGGAGG < 41bp 0.516594890771836 0.797306987032117 0.21766427 0.3161701 prediction 0.561424192520562 Functional Gain - ATP1B1 ENSG00000143153 CDS Human protein_coding chr1:169076072 chr1:169076073 synonymous SNV . 0 22 hm5C_associated_SNPs_103721 0 0 1 0 1 ATP1B1 chr1:169076164 5'GT 169076164 Upstream 92bp
chr4 99982392 99982392 1 + T G LUSC 99982390 + 99982370 99982410 41 GCTCAGTTTGAGCACACCCTCCTGGTCACAGACACTGGCTG GCTCAGTTTGAGCACACCCTCCGGGTCACAGACACTGGCTG < 41bp 0.45113300781586 0.780708104177716 0.06584358 0.6500029 prediction 0.561416208355432 Functional Gain - METAP1 ENSG00000164024 CDS Human protein_coding chr4:99982390 chr4:99982392 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_103722 0 0 1 2 1 METAP1 chr4:99982305 3'AG 99982305 Downstream 88bp
chr18 33263520 33263520 1 + T G COAD 33263517 + 33263497 33263537 41 GGATGCCCATTGTGAGTGTACAGTGGGATGGCTGGAGCCTC GGATGCCCATTGTGAGTGTACAGGGGGATGGCTGGAGCCTC < 41bp 0.61543197519929 0.896136833146453 0.22848862 0.91423774 prediction 0.561409715894326 Functional Gain - GALNT1 ENSG00000141429 CDS Human protein_coding chr18:33263517 chr18:33263520 nonsynonymous SNV 0.924 0 24 hm5C_associated_SNPs_103723 0 0 1 0 1 GALNT1 chr18:33263562 5'GT 33263562 Upstream 43bp
chr9 117038033 117038033 1 + C A rs62640054 117038029 + 117038009 117038049 41 GGACGGGCCCCCCGGCCCCCCTGGCGTCACTGGTGTCCGGG GGACGGGCCCCCCGGCCCCCCTGGAGTCACTGGTGTCCGGG < 41bp 0.395175272943304 0.78069072573877 0.27726611 0.44665107 prediction 0.561381451477541 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117038029 chr9:117038033 synonymous SNV . 0 25 hm5C_associated_SNPs_103725 0 0 1 0 2 COL27A1 chr9:117037941 3'AG 117037941 Downstream 93bp
chr9 117038033 117038033 1 + C A rs62640054 117038029 + 117038009 117038049 41 GGACGGGCCCCCCGGCCCCCCTGGCGTCACTGGTGTCCGGG GGACGGGCCCCCCGGCCCCCCTGGAGTCACTGGTGTCCGGG < 41bp 0.395175272943304 0.78069072573877 0.27726611 0.44665107 prediction 0.561381451477541 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117038029 chr9:117038033 synonymous SNV . 0 25 hm5C_associated_SNPs_103725 0 0 1 0 2 COL27A1 chr9:117038048 5'GT 117038048 Upstream 16bp
chr12 10213792 10213792 1 + T A LUSC 10213788 + 10213768 10213808 41 TCATCCAACAAGAGAGGGCACTGCTAAACTTTACAGAATGG TCATCCAACAAGAGAGGGCACTGCAAAACTTTACAGAATGG < 41bp 0.460160239543804 0.780685432262723 0.117666215 0.26061496 prediction 0.561370864525447 Functional Gain - CLEC9A ENSG00000197992 CDS Human protein_coding chr12:10213788 chr12:10213792 nonsynonymous SNV 0.012 1 25 hm5C_associated_SNPs_103726 0 0 0 0 1 CLEC9A chr12:10213872 5'GT 10213872 Upstream 81bp
chr2 71251540 71251540 1 + C A rs62145106 71251536 + 71251516 71251556 41 ACGGCAAAGGTATTGGGGATCACACGGAAACTGCATGCCGC ACGGCAAAGGTATTGGGGATCACAAGGAAACTGCATGCCGC < 41bp 0.43065028404957 0.780661690899359 0.11837152 0.24466398 prediction 0.561323381798719 Functional Gain - OR7E91P ENSG00000236469 ncRNA_intronic Human antisense chr2:71251536 chr2:71251540 . . 0 25 hm5C_associated_SNPs_103729 0 0 0 0 1 OR7E91P chr2:71251581 5'GT 71251581 Upstream 42bp
chr2 220112473 220112473 1 + T A UCS 220112469 + 220112449 220112489 41 CTGTGTCATCGATGAGCGGACTGATGTCTGGGTGAGGAGCA CTGTGTCATCGATGAGCGGACTGAAGTCTGGGTGAGGAGCA < 41bp 0.469845657896368 0.78063194671405 0.1267032 0.1724278 prediction 0.561263893428099 Functional Gain - STK16 ENSG00000115661 CDS Human protein_coding chr2:220112469 chr2:220112473 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103731 0 0 1 1 2 STK16 chr2:220112384 3'AG 220112384 Downstream 90bp
chr2 220112473 220112473 1 + T A UCS 220112469 + 220112449 220112489 41 CTGTGTCATCGATGAGCGGACTGATGTCTGGGTGAGGAGCA CTGTGTCATCGATGAGCGGACTGAAGTCTGGGTGAGGAGCA < 41bp 0.469845657896368 0.78063194671405 0.1267032 0.1724278 prediction 0.561263893428099 Functional Gain - STK16 ENSG00000115661 CDS Human protein_coding chr2:220112469 chr2:220112473 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103731 0 0 1 1 2 STK16 chr2:220112479 5'GT 220112479 Upstream 7bp
chr1 159778165 159778165 1 + T A rs140069687 159778161 + 159778141 159778181 41 CAGAGCCGTGGCCAGTACAGCTGCTCTGGGCAGGTGATGTA CAGAGCCGTGGCCAGTACAGCTGCACTGGGCAGGTGATGTA < 41bp 0.457397349901707 0.780621390017717 0.2647435 0.27331603 prediction 0.561242780035434 Functional Gain - FCRL6 ENSG00000181036 CDS Human protein_coding chr1:159778161 chr1:159778165 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_103732 0 0 0 0 1 FCRL6 chr1:159778234 5'GT 159778234 Upstream 70bp
chr15 52497116 52497116 1 + T G OV 52497113 + 52497093 52497133 41 TGTCCTTGCGCAGGAAGAGGCTGTTCAGCGTGACCGCCCCG TGTCCTTGCGCAGGAAGAGGCTGGTCAGCGTGACCGCCCCG < 41bp 0.403339187269817 0.780619784356607 0.5883517 0.8118848 prediction 0.561239568713213 Functional Gain - MYO5C ENSG00000128833 CDS Human protein_coding chr15:52497113 chr15:52497116 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_103733 0 0 0 0 1 MYO5C chr15:52497086 3'AG 52497086 Downstream 31bp
chr22 35813849 35813849 1 + T A UCEC 35813845 + 35813825 35813865 41 AGAAGTTTATTGCCTACTGCCGAGTGTGAGTCCTGGACGCA AGAAGTTTATTGCCTACTGCCGAGAGTGAGTCCTGGACGCA < 41bp 0.555789023274016 0.836404820493797 0.76890874 0.8885807 prediction 0.56123159443956 Functional Gain - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35813845 chr22:35813849 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_103735 0 0 1 0 1 MCM5 chr22:35813849 3'AG 35813849 Downstream 1bp
chr1 17265550 17265550 1 + C A LUAD 17265546 + 17265526 17265566 41 CTCGCCCGGCCGAGGCCGTTCACCCCGCCGAGGCCCCTCCC CTCGCCCGGCCGAGGCCGTTCACCACGCCGAGGCCCCTCCC < 41bp 0.381502291565585 0.780603151754997 0.8395834 0.9162327 prediction 0.561206303509993 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17265546 chr1:17265550 synonymous SNV . 0 25 hm5C_associated_SNPs_103738 0 0 0 0 1 CROCC chr1:17265637 5'GT 17265637 Upstream 88bp
chr19 1081559 1081559 1 + C A COAD 1081555 + 1081535 1081575 41 CTGGCCGCCCCCAGTGCTGCCTGGCCTGCCACAAGAAATGT CTGGCCGCCCCCAGTGCTGCCTGGACTGCCACAAGAAATGT < 41bp 0.3853995355707 0.780597360255424 0.058793724 0.07533324 prediction 0.561194720510848 Functional Gain - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1081555 chr19:1081559 nonsynonymous SNV 0.993 5 25 hm5C_associated_SNPs_103741 0 0 1 0 1 ARHGAP45 chr19:1081549 3'AG 1081549 Downstream 11bp
chr11 61447942 61447942 1 + C A rs560610024 61447938 + 61447918 61447958 41 GGAGCCCAGGATGGAGGTGGCGGTCGCGGCGGCGGGCCGAG GGAGCCCAGGATGGAGGTGGCGGTAGCGGCGGCGGGCCGAG < 41bp 0.474308367868824 0.780576107271071 0.8918977 0.9115102 prediction 0.561152214542142 Functional Gain - DAGLA ENSG00000134780 UTR5 Human protein_coding chr11:61447938 chr11:61447942 . . 0 25 hm5C_associated_SNPs_103742 0 0 0 0 1 DAGLA chr11:61447976 5'GT 61447976 Upstream 35bp
chr12 12588662 12588662 1 + T C STAD 12588660 + 12588640 12588680 41 TCCGATATCAAGATCACCTGCATCAGTGTGCAGAGGCCGTT TCCGATATCAAGATCACCTGCACCAGTGTGCAGAGGCCGTT < 41bp 0.509627658417929 0.790192408145952 0.076601356 0.07176587 prediction 0.561129499456046 Functional Gain - BORCS5 ENSG00000165714 CDS Human protein_coding chr12:12588660 chr12:12588662 synonymous SNV . 0 23 hm5C_associated_SNPs_103745 0 0 1 0 1 BORCS5 chr12:12588719 5'GT 12588719 Upstream 58bp
chr9 80921376 80921376 1 + C A SKCM 80921372 + 80921352 80921392 41 GTTTGTGACATGTCCTCAAACTTCCTGTCCAAGCCAGTGGA GTTTGTGACATGTCCTCAAACTTCATGTCCAAGCCAGTGGA < 41bp 0.35069057577371 0.78051600451102 0.028300405 0.05632183 prediction 0.56103200902204 Functional Gain - PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80921372 chr9:80921376 nonsynonymous SNV 0.952 3 25 hm5C_associated_SNPs_103750 0 0 1 0 1 PSAT1 chr9:80921402 5'GT 80921402 Upstream 27bp
chr19 8431177 8431177 1 + C G LUSC 8431176 + 8431156 8431196 41 AGATGGCCCAGCCAGTTGACCCGGCTCACAATGTCAGCCGC AGATGGCCCAGCCAGTTGACCGGGCTCACAATGTCAGCCGC < 41bp 0.470682110495454 0.78050671917139 0.32514495 0.77016604 prediction 0.56101343834278 Functional Gain - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8431176 chr19:8431177 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_103751 0 0 0 0 2 ANGPTL4 chr19:8431086 3'AG 8431086 Downstream 92bp
chr19 8431177 8431177 1 + C G LUSC 8431176 + 8431156 8431196 41 AGATGGCCCAGCCAGTTGACCCGGCTCACAATGTCAGCCGC AGATGGCCCAGCCAGTTGACCGGGCTCACAATGTCAGCCGC < 41bp 0.470682110495454 0.78050671917139 0.32514495 0.77016604 prediction 0.56101343834278 Functional Gain - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8431176 chr19:8431177 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_103751 0 0 0 0 2 ANGPTL4 chr19:8431203 5'GT 8431203 Upstream 27bp
chr10 15091670 15091670 1 + T G GBM 15091668 + 15091648 15091688 41 TCAACTGCTTATACAAAAACCCTGAGGCAACTTTTAAGCTG TCAACTGCTTATACAAAAACCCGGAGGCAACTTTTAAGCTG < 41bp 0.45384940693902 0.780502009976793 0.101376235 0.32414412 prediction 0.561004019953587 Functional Gain - OLAH ENSG00000152463 CDS Human protein_coding chr10:15091668 chr10:15091670 synonymous SNV . 0 23 hm5C_associated_SNPs_103752 0 0 0 0 2 OLAH chr10:15091634 3'AG 15091634 Downstream 37bp
chr10 15091670 15091670 1 + T G GBM 15091668 + 15091648 15091688 41 TCAACTGCTTATACAAAAACCCTGAGGCAACTTTTAAGCTG TCAACTGCTTATACAAAAACCCGGAGGCAACTTTTAAGCTG < 41bp 0.45384940693902 0.780502009976793 0.101376235 0.32414412 prediction 0.561004019953587 Functional Gain - OLAH ENSG00000152463 CDS Human protein_coding chr10:15091668 chr10:15091670 synonymous SNV . 0 23 hm5C_associated_SNPs_103752 0 0 0 0 2 OLAH chr10:15091764 5'GT 15091764 Upstream 95bp
chr12 69145967 69145967 1 + T A UCEC 69145963 + 69145943 69145983 41 ATTTGGTCCCTGGTCAGTTTCTGCTTTGGTAAGTTCTAATT ATTTGGTCCCTGGTCAGTTTCTGCATTGGTAAGTTCTAATT < 41bp 0.575258784668499 0.855750122931559 0.06798428 0.2337228 prediction 0.560982676526121 Functional Gain - SLC35E3 ENSG00000175782 CDS Human protein_coding chr12:69145963 chr12:69145967 synonymous SNV . 0 25 hm5C_associated_SNPs_103753 0 0 1 0 1 SLC35E3 chr12:69145970 5'GT 69145970 Upstream 4bp
chr1 57340647 57340647 1 + C G ESCA 57340643 + 57340623 57340663 41 ACCGACACCGGAGCCTCTTGCAGCCAAACAAGTTTGGGGGA ACCGACACCGGAGCCTCTTGCAGCGAAACAAGTTTGGGGGA < 41bp 0.496464477355958 0.780487982972838 0.88660777 0.8948544 prediction 0.560975965945677 Functional Gain - C8A ENSG00000157131 CDS Human protein_coding chr1:57340643 chr1:57340647 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_103754 0 0 1 0 1 C8A chr1:57340622 3'AG 57340622 Downstream 26bp
chr16 2868811 2868811 1 + C A STAD 2868807 + 2868787 2868827 41 AATATCTATCTGAGCCCTCGCTACCTGGGGAATTCACCCTA AATATCTATCTGAGCCCTCGCTACATGGGGAATTCACCCTA < 41bp 0.356744184024579 0.780474874944906 0.084112555 0.8919641 prediction 0.560949749889813 Functional Gain - PRSS21 ENSG00000007038 CDS Human protein_coding chr16:2868807 chr16:2868811 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_103755 0 0 0 0 1 PRSS21 chr16:2868760 3'AG 2868760 Downstream 52bp
chr13 111806285 111806285 1 + C G rs139490439 111806284 + 111806264 111806304 41 CCCCGGAGCGAGAGCGAGTGCCTGAGCAACATCCGCGAGTT CCCCGGAGCGAGAGCGAGTGCGTGAGCAACATCCGCGAGTT < 41bp 0.493698815456019 0.780447565175641 0.6311648 0.7494279 prediction 0.560895130351282 Functional Gain - ARHGEF7 ENSG00000102606 CDS Human protein_coding chr13:111806284 chr13:111806285 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_103757 0 0 1 0 2 ARHGEF7 chr13:111806252 3'AG 111806252 Downstream 34bp
chr13 111806285 111806285 1 + C G rs139490439 111806284 + 111806264 111806304 41 CCCCGGAGCGAGAGCGAGTGCCTGAGCAACATCCGCGAGTT CCCCGGAGCGAGAGCGAGTGCGTGAGCAACATCCGCGAGTT < 41bp 0.493698815456019 0.780447565175641 0.6311648 0.7494279 prediction 0.560895130351282 Functional Gain - ARHGEF7 ENSG00000102606 CDS Human protein_coding chr13:111806284 chr13:111806285 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_103757 0 0 1 0 2 ARHGEF7 chr13:111806338 5'GT 111806338 Upstream 54bp
chr3 183882129 183882129 1 + T A rs142016012 183882125 + 183882105 183882145 41 TAACCCATCGGAGCTGCCACCACCTATGGAGCGCACGGGAG TAACCCATCGGAGCTGCCACCACCAATGGAGCGCACGGGAG < 41bp 0.449524788590964 0.780438356871035 0.34089974 0.5704305 prediction 0.56087671374207 Functional Gain - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183882125 chr3:183882129 synonymous SNV . 0 25 hm5C_associated_SNPs_103758 0 0 1 0 2 DVL3 chr3:183882055 3'AG 183882055 Downstream 75bp
chr3 183882129 183882129 1 + T A rs142016012 183882125 + 183882105 183882145 41 TAACCCATCGGAGCTGCCACCACCTATGGAGCGCACGGGAG TAACCCATCGGAGCTGCCACCACCAATGGAGCGCACGGGAG < 41bp 0.449524788590964 0.780438356871035 0.34089974 0.5704305 prediction 0.56087671374207 Functional Gain - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183882125 chr3:183882129 synonymous SNV . 0 25 hm5C_associated_SNPs_103758 0 0 1 0 2 DVL3 chr3:183882176 5'GT 183882176 Upstream 48bp
chr2 71188076 71188076 1 + C A LIHC 71188072 + 71188052 71188092 41 TTGCCGCTCAGATCTGCCGCCAGGCGGGGCTGGTGAAGAAG TTGCCGCTCAGATCTGCCGCCAGGAGGGGCTGGTGAAGAAG < 41bp 0.37585412183188 0.780437465932581 0.8644347 0.8384944 prediction 0.560874931865162 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71188072 chr2:71188076 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_103759 0 0 0 0 2 ATP6V1B1 chr2:71188051 3'AG 71188051 Downstream 26bp
chr2 71188076 71188076 1 + C A LIHC 71188072 + 71188052 71188092 41 TTGCCGCTCAGATCTGCCGCCAGGCGGGGCTGGTGAAGAAG TTGCCGCTCAGATCTGCCGCCAGGAGGGGCTGGTGAAGAAG < 41bp 0.37585412183188 0.780437465932581 0.8644347 0.8384944 prediction 0.560874931865162 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71188072 chr2:71188076 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_103759 0 0 0 0 2 ATP6V1B1 chr2:71188152 5'GT 71188152 Upstream 77bp
chrX 117883649 117883649 1 + T G SARC 117883647 + 117883627 117883667 41 CTGAGTCTGCTGTGACTGAGCTTCAATGCATTTGGCACAAC CTGAGTCTGCTGTGACTGAGCTGCAATGCATTTGGCACAAC < 41bp 0.570218833636638 0.850652344492791 0.07562697 0.13714752 prediction 0.560867021712306 Functional Gain - IL13RA1 ENSG00000131724 CDS Human protein_coding chrX:117883647 chrX:117883649 synonymous SNV . 0 23 hm5C_associated_SNPs_103760 0 0 1 0 2 IL13RA1 chrX:117883621 3'AG 117883621 Downstream 29bp
chrX 117883649 117883649 1 + T G SARC 117883647 + 117883627 117883667 41 CTGAGTCTGCTGTGACTGAGCTTCAATGCATTTGGCACAAC CTGAGTCTGCTGTGACTGAGCTGCAATGCATTTGGCACAAC < 41bp 0.570218833636638 0.850652344492791 0.07562697 0.13714752 prediction 0.560867021712306 Functional Gain - IL13RA1 ENSG00000131724 CDS Human protein_coding chrX:117883647 chrX:117883649 synonymous SNV . 0 23 hm5C_associated_SNPs_103760 0 0 1 0 2 IL13RA1 chrX:117883741 5'GT 117883741 Upstream 93bp
chr18 8793060 8793060 1 + T A PRAD 8793056 + 8793036 8793076 41 TAGAGGAGCTACAGGGTCAGCTCGTGCAGGCGGCCAGACTG TAGAGGAGCTACAGGGTCAGCTCGAGCAGGCGGCCAGACTG < 41bp 0.462062532944717 0.780399304065881 0.16077065 0.4416284 prediction 0.560798608131762 Functional Gain - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8793056 chr18:8793060 nonsynonymous SNV 0.157 0 25 hm5C_associated_SNPs_103764 0 0 0 0 2 MTCL1 chr18:8792996 3'AG 8792996 Downstream 65bp
chr18 8793060 8793060 1 + T A PRAD 8793056 + 8793036 8793076 41 TAGAGGAGCTACAGGGTCAGCTCGTGCAGGCGGCCAGACTG TAGAGGAGCTACAGGGTCAGCTCGAGCAGGCGGCCAGACTG < 41bp 0.462062532944717 0.780399304065881 0.16077065 0.4416284 prediction 0.560798608131762 Functional Gain - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8793056 chr18:8793060 nonsynonymous SNV 0.157 0 25 hm5C_associated_SNPs_103764 0 0 0 0 2 MTCL1 chr18:8793118 5'GT 8793118 Upstream 59bp
chr7 92078110 92078110 1 + T G UCEC 92078107 + 92078087 92078127 41 AGGTCTGCTCGGCTCAGAAACACTAAATACAAATCTGCTCC AGGTCTGCTCGGCTCAGAAACACGAAATACAAATCTGCTCC < 41bp 0.617331147723667 0.897726618995065 0.24464396 0.43249533 prediction 0.560790942542797 Functional Gain - GATAD1 ENSG00000157259 CDS Human protein_coding chr7:92078107 chr7:92078110 synonymous SNV . 0 24 hm5C_associated_SNPs_103765 0 0 1 0 1 GATAD1 chr7:92078191 5'GT 92078191 Upstream 82bp
chr11 19170823 19170823 1 + T A LIHC 19170819 + 19170799 19170839 41 GAGAGGGATTCAGCAGCATCCACCTGGCAGTATTGTTTCAA GAGAGGGATTCAGCAGCATCCACCAGGCAGTATTGTTTCAA < 41bp 0.575351634087222 0.855677134675177 0.08205652 0.10424349 prediction 0.56065100117591 Functional Gain - ZDHHC13 ENSG00000177054 CDS Human protein_coding chr11:19170819 chr11:19170823 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_103772 0 0 1 0 2 ZDHHC13 chr11:19170734 3'AG 19170734 Downstream 90bp
chr11 19170823 19170823 1 + T A LIHC 19170819 + 19170799 19170839 41 GAGAGGGATTCAGCAGCATCCACCTGGCAGTATTGTTTCAA GAGAGGGATTCAGCAGCATCCACCAGGCAGTATTGTTTCAA < 41bp 0.575351634087222 0.855677134675177 0.08205652 0.10424349 prediction 0.56065100117591 Functional Gain - ZDHHC13 ENSG00000177054 CDS Human protein_coding chr11:19170819 chr11:19170823 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_103772 0 0 1 0 2 ZDHHC13 chr11:19170878 5'GT 19170878 Upstream 56bp
chr10 18828215 18828215 1 - A T BRCA 18828219 - 18828199 18828239 41 TTCCACACTAGGTTCTTCTTCAGCTTGGGAAGCAGAACGGA TTCCACACTAGGTTCTTCTTCAGCATGGGAAGCAGAACGGA < 41bp 0.474716431736377 0.780295507709866 0.4147226 0.2960289 prediction 0.560591015419732 Functional Gain - CACNB2 ENSG00000165995 CDS Human antisense chr10:18828219 chr10:18828215 nonsynonymous SNV 0.976 2 25 hm5C_associated_SNPs_103774 0 0 1 0 2 CACNB2 chr10:18828123 5'GT 18828123 Upstream 93bp
chr10 18828215 18828215 1 - A T BRCA 18828219 - 18828199 18828239 41 TTCCACACTAGGTTCTTCTTCAGCTTGGGAAGCAGAACGGA TTCCACACTAGGTTCTTCTTCAGCATGGGAAGCAGAACGGA < 41bp 0.474716431736377 0.780295507709866 0.4147226 0.2960289 prediction 0.560591015419732 Functional Gain - CACNB2 ENSG00000165995 CDS Human protein_coding chr10:18828219 chr10:18828215 nonsynonymous SNV 0.976 2 25 hm5C_associated_SNPs_103774 0 0 1 0 2 CACNB2 chr10:18828228 3'AG 18828228 Downstream 14bp
chr16 29096539 29096539 1 + C G LUSC 29096538 + 29096518 29096558 41 TTTTCTTTTTCCCTCAAAAGCCCGAGTGATCATTAAGGAAG TTTTCTTTTTCCCTCAAAAGCGCGAGTGATCATTAAGGAAG < 41bp 0.502605847682659 0.782858043850367 0.40942377 0.43371263 prediction 0.560504392335415 Functional Gain - RRN3P2 ENSG00000103472 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:29096538 chr16:29096539 . . 0 22 hm5C_associated_SNPs_103775 0 0 0 0 2 RRN3P2 chr16:29096538 3'AG 29096538 Downstream 2bp
chr16 29096539 29096539 1 + C G LUSC 29096538 + 29096518 29096558 41 TTTTCTTTTTCCCTCAAAAGCCCGAGTGATCATTAAGGAAG TTTTCTTTTTCCCTCAAAAGCGCGAGTGATCATTAAGGAAG < 41bp 0.502605847682659 0.782858043850367 0.40942377 0.43371263 prediction 0.560504392335415 Functional Gain - RRN3P2 ENSG00000103472 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:29096538 chr16:29096539 . . 0 22 hm5C_associated_SNPs_103775 0 0 0 0 2 RRN3P2 chr16:29096597 5'GT 29096597 Upstream 59bp
chr20 49196284 49196284 1 + C A rs2230604 49196280 + 49196260 49196300 41 CCACGAGGACCTGGAGCCCCCACCCGAGCATATCCCCCCAC CCACGAGGACCTGGAGCCCCCACCAGAGCATATCCCCCCAC < 41bp 0.641006825654699 0.921232558184105 0.11233395 0.20895472 prediction 0.560451465058812 Functional Gain - PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49196280 chr20:49196284 synonymous SNV . 0 25 hm5C_associated_SNPs_103776 0 0 1 0 1 PTPN1 chr20:49196240 3'AG 49196240 Downstream 45bp
chrX 2670373 2670373 1 + C A BLCA 2670369 + 2670349 2670389 41 TTCCTGTGTTTTCTAATGCACGCCCGAGGTAAGAGGCATTT TTCCTGTGTTTTCTAATGCACGCCAGAGGTAAGAGGCATTT < 41bp 0.389800101010318 0.780223238510084 0.095472574 0.3435602 prediction 0.560446477020168 Functional Gain - XG ENSG00000124343 CDS Human protein_coding chrX:2670369 chrX:2670373 synonymous SNV . 0 25 hm5C_associated_SNPs_103777 0 0 0 0 1 XG chrX:2670376 5'GT 2670376 Upstream 4bp
chr16 21739682 21739682 1 + C A UCEC 21739678 + 21739658 21739698 41 GCTTGGGCGACTGCTCTACACGGCCTCAGAGACTGCCCAGA GCTTGGGCGACTGCTCTACACGGCATCAGAGACTGCCCAGA < 41bp 0.633090751384832 0.913289533910106 0.04146424 0.036123723 prediction 0.560397565050549 Functional Gain - OTOA ENSG00000155719 CDS Human protein_coding chr16:21739678 chr16:21739682 nonsynonymous SNV 0.313 1 25 hm5C_associated_SNPs_103780 0 0 0 0 1 OTOA chr16:21739752 5'GT 21739752 Upstream 71bp
chr7 139719913 139719913 1 + C G rs200404222 139719912 + 139719892 139719932 41 CCCGCTGACACAGAAGGCTGCCGGGTGGGGGGAGGGCACCC CCCGCTGACACAGAAGGCTGCGGGGTGGGGGGAGGGCACCC < 41bp 0.535599047926258 0.815794384915389 0.5698465 0.89347446 prediction 0.560390673978261 Functional Gain - TBXAS1 ENSG00000059377 UTR3 Human protein_coding chr7:139719912 chr7:139719913 . . 0 22 hm5C_associated_SNPs_103781 0 0 0 0 1 TBXAS1 chr7:139719825 3'AG 139719825 Downstream 89bp
chr1 17657607 17657607 1 + C G rs35809521 17657603 + 17657583 17657623 41 ACCCTGGGGTAGAGGTGACCCTGACGATGAAAGTGGCCAGT ACCCTGGGGTAGAGGTGACCCTGAGGATGAAAGTGGCCAGT < 41bp 0.525410804733925 0.805601226709218 0.13612351 0.1493102 prediction 0.560380843950586 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17657603 chr1:17657607 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_103782 0 0 0 0 1 PADI4 chr1:17657644 5'GT 17657644 Upstream 38bp
chr15 31119964 31119964 1 + C A rs531136295 31119960 + 31119940 31119980 41 TGGAGGATGTGGCCACAAGACTTGCAGAGCGGCCGCCTCTC TGGAGGATGTGGCCACAAGACTTGAAGAGCGGCCGCCTCTC < 41bp 0.607679452186164 0.887839065439367 0.13636294 0.13158357 prediction 0.560319226506407 Functional Gain - HERC2P10 ENSG00000259845 ncRNA_splicing Human unprocessed_pseudogene chr15:31119960 chr15:31119964 . . 0 25 hm5C_associated_SNPs_103784 0 0 0 0 1 HERC2P10 chr15:31119903 3'AG 31119903 Downstream 62bp
chr15 73832859 73832859 1 + T A OV 73832855 + 73832835 73832875 41 TCACTCATTGGTAGCAAGGACTGGTTGAAGATTGTAAGACG TCACTCATTGGTAGCAAGGACTGGATGAAGATTGTAAGACG < 41bp 0.462684453024825 0.780152653015579 0.29318523 0.37713653 prediction 0.560305306031158 Functional Gain - REC114 ENSG00000183324 CDS Human protein_coding chr15:73832855 chr15:73832859 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103787 0 0 0 0 1 REC114 chr15:73832826 3'AG 73832826 Downstream 34bp
chrX 40450585 40450585 1 + C G rs9014 40450584 + 40450564 40450604 41 GTGAACAAACTGGCTCTACCCCCAGGCAGTGTCATTTCGTA GTGAACAAACTGGCTCTACCCGCAGGCAGTGTCATTTCGTA < 41bp 0.510456176507021 0.790584073924963 0.27540165 0.6525952 prediction 0.560255794835884 Functional Gain - ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40450584 chrX:40450585 nonsynonymous SNV 0.910 0 22 hm5C_associated_SNPs_103789 1 0 1 1 2 ATP6AP2 chrX:40450486 3'AG 40450486 Downstream 100bp
chrX 40450585 40450585 1 + C G rs9014 40450584 + 40450564 40450604 41 GTGAACAAACTGGCTCTACCCCCAGGCAGTGTCATTTCGTA GTGAACAAACTGGCTCTACCCGCAGGCAGTGTCATTTCGTA < 41bp 0.510456176507021 0.790584073924963 0.27540165 0.6525952 prediction 0.560255794835884 Functional Gain - ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40450584 chrX:40450585 nonsynonymous SNV 0.910 0 22 hm5C_associated_SNPs_103789 1 0 1 1 2 ATP6AP2 chrX:40450617 5'GT 40450617 Upstream 33bp
chr5 150632814 150632814 1 + C A COAD 150632810 + 150632790 150632830 41 ATGCAGGCTCCCCTCCTGATCGCCCTGGGCTTGCTTCTCGC ATGCAGGCTCCCCTCCTGATCGCCATGGGCTTGCTTCTCGC < 41bp 0.623820233839963 0.903933190514206 0.14435732 0.8629136 prediction 0.560225913348486 Functional Gain - GM2A ENSG00000196743 CDS Human protein_coding chr5:150632810 chr5:150632814 nonsynonymous SNV 0.005 2 25 hm5C_associated_SNPs_103790 0 0 1 0 1 GM2A chr5:150632858 5'GT 150632858 Upstream 45bp
chr12 8672897 8672897 1 + T G OV 8672894 + 8672874 8672914 41 GAGATGAGAATGCCAAAGGTCAGTGGCGTTGGGTGGACCAG GAGATGAGAATGCCAAAGGTCAGGGGCGTTGGGTGGACCAG < 41bp 0.61946108647722 0.899565597751137 0.3558671 0.9365722 prediction 0.560209022547833 Functional Gain - CLEC4D ENSG00000166527 CDS Human protein_coding chr12:8672894 chr12:8672897 nonsynonymous SNV 0.137 3 24 hm5C_associated_SNPs_103791 0 0 0 0 1 CLEC4D chr12:8672822 3'AG 8672822 Downstream 76bp
chr6 127440410 127440410 1 + T A LUAD 127440406 + 127440386 127440426 41 GAATACATCGGCAGCCAAAACGCCTCCCGGGGAAGGCGCCA GAATACATCGGCAGCCAAAACGCCACCCGGGGAAGGCGCCA < 41bp 0.571439420778382 0.85152970003455 0.19581011 0.35340697 prediction 0.560180558512335 Functional Gain - RSPO3 ENSG00000146374 CDS Human protein_coding chr6:127440406 chr6:127440410 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_103792 0 0 0 0 1 RSPO3 chr6:127440434 5'GT 127440434 Upstream 25bp
chr7 87459269 87459269 1 + T G STAD 87459266 + 87459246 87459286 41 GTCAGTGGCAAGTTACAAGTCTCTAACAAGCTTAAAATCTA GTCAGTGGCAAGTTACAAGTCTCGAACAAGCTTAAAATCTA < 41bp 0.439031302973257 0.780055655569302 0.93351823 0.3609138 prediction 0.560111311138604 Functional Gain - RUNDC3B ENSG00000105784 CDS Human protein_coding chr7:87459266 chr7:87459269 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_103798 0 0 0 0 1 RUNDC3B chr7:87459200 3'AG 87459200 Downstream 70bp
chr20 45633610 45633610 1 + C A rs564717893 45633606 + 45633586 45633626 41 GCCCACGTGTCCTCCCCCGCCAGCCTTCCACAGCCATGGCA GCCCACGTGTCCTCCCCCGCCAGCATTCCACAGCCATGGCA < 41bp 0.367049655898751 0.780021470526274 0.083232045 0.18188992 prediction 0.560042941052549 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45633606 chr20:45633610 nonsynonymous SNV 0.022 2 25 hm5C_associated_SNPs_103800 0 0 0 0 1 EYA2 chr20:45633581 3'AG 45633581 Downstream 30bp
chr20 2732902 2732902 1 + C G rs2235813 2732901 + 2732881 2732921 41 CGGGGACGCCACCCCGGGGCCCGAGCCGGGTGCGTGGGCCG CGGGGACGCCACCCCGGGGCCGGAGCCGGGTGCGTGGGCCG < 41bp 0.501757732331722 0.781773569616798 0.20800078 0.92661357 prediction 0.560031674570152 Functional Gain - EBF4 ENSG00000088881 CDS Human protein_coding chr20:2732901 chr20:2732902 synonymous SNV . 0 22 hm5C_associated_SNPs_103802 0 0 0 0 1 EBF4 chr20:2732909 5'GT 2732909 Upstream 8bp
chr12 16050876 16050876 1 + T G UCEC 16050874 + 16050854 16050894 41 TCAATTCTGCATCTCTTCATCCTGAGAAAGAATTTCTTGTT TCAATTCTGCATCTCTTCATCCGGAGAAAGAATTTCTTGTT < 41bp 0.469373698762725 0.780008930980618 0.18409577 0.9203881 prediction 0.560017861961237 Functional Gain - STRAP ENSG00000023734 CDS Human protein_coding chr12:16050874 chr12:16050876 synonymous SNV . 0 23 hm5C_associated_SNPs_103803 0 0 1 0 2 STRAP chr12:16050816 3'AG 16050816 Downstream 61bp
chr12 16050876 16050876 1 + T G UCEC 16050874 + 16050854 16050894 41 TCAATTCTGCATCTCTTCATCCTGAGAAAGAATTTCTTGTT TCAATTCTGCATCTCTTCATCCGGAGAAAGAATTTCTTGTT < 41bp 0.469373698762725 0.780008930980618 0.18409577 0.9203881 prediction 0.560017861961237 Functional Gain - STRAP ENSG00000023734 CDS Human protein_coding chr12:16050874 chr12:16050876 synonymous SNV . 0 23 hm5C_associated_SNPs_103803 0 0 1 0 2 STRAP chr12:16050952 5'GT 16050952 Upstream 77bp
chr7 150217085 150217085 1 + C A BRCA 150217081 + 150217061 150217101 41 GCATGGCTGAGAGTGAGGACCGCTCCCTGAGGATCGTTCTG GCATGGCTGAGAGTGAGGACCGCTACCTGAGGATCGTTCTG < 41bp 0.386303409785572 0.779980068667091 0.17598185 0.3259995 prediction 0.559960137334181 Functional Gain - GIMAP7 ENSG00000179144 CDS Human protein_coding chr7:150217081 chr7:150217085 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_103806 0 0 0 0 1 GIMAP7 chr7:150217022 3'AG 150217022 Downstream 64bp
chr19 7570448 7570448 1 + T G BLCA 7570446 + 7570426 7570466 41 CAGACTCCGGAGTCGCACATCCTGAAAGGAAATTGGTGCCC CAGACTCCGGAGTCGCACATCCGGAAAGGAAATTGGTGCCC < 41bp 0.438445479841044 0.779962948270993 0.12977552 0.37764624 prediction 0.559925896541986 Functional Gain - TEX45 ENSG00000198723 CDS Human protein_coding chr19:7570446 chr19:7570448 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_103808 0 0 0 0 1 TEX45 chr19:7570512 5'GT 7570512 Upstream 65bp
chr1 171174690 171174690 1 + C A LUSC 171174686 + 171174666 171174706 41 CTCACCTGGACAAGTCAACCCTCGCGTGCATTGGTCTCATC CTCACCTGGACAAGTCAACCCTCGAGTGCATTGGTCTCATC < 41bp 0.636535065310672 0.916490546134245 0.08287349 0.39919677 prediction 0.559910961647146 Functional Gain - FMO2 ENSG00000094963 CDS Human protein_coding chr1:171174686 chr1:171174690 nonsynonymous SNV 0.804 4 25 hm5C_associated_SNPs_103809 0 0 0 0 1 FMO2 chr1:171174773 5'GT 171174773 Upstream 84bp
chr2 171716263 171716263 1 + C A LUAD 171716259 + 171716239 171716279 41 CCTGATGATGGAGTCAGGTACGACCATGGTTGGCTACCAGC CCTGATGATGGAGTCAGGTACGACAATGGTTGGCTACCAGC < 41bp 0.379503713552361 0.779914557137565 0.28117493 0.35607785 prediction 0.559829114275129 Functional Gain - GAD1 ENSG00000128683 CDS Human protein_coding chr2:171716259 chr2:171716263 synonymous SNV . 0 25 hm5C_associated_SNPs_103814 0 0 0 0 1 GAD1 chr2:171716219 3'AG 171716219 Downstream 45bp
chr3 183954229 183954229 1 + C G rs73884900 183954228 + 183954208 183954248 41 GGACTGGGCCGTGGGGCAGCCCCAGCACAGGGCCTACCCTC GGACTGGGCCGTGGGGCAGCCGCAGCACAGGGCCTACCCTC < 41bp 0.468008091070148 0.779903551374236 0.19186151 0.25399846 prediction 0.559807102748471 Functional Gain - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183954228 chr3:183954229 synonymous SNV . 0 22 hm5C_associated_SNPs_103815 0 0 0 0 1 VWA5B2 chr3:183954131 3'AG 183954131 Downstream 99bp
chr6 116600829 116600829 1 + C A UCEC 116600825 + 116600805 116600845 41 CGGTGGAGGCGGGAGCGCGACGGTCTCCGAGCCTCCCTCAC CGGTGGAGGCGGGAGCGCGACGGTATCCGAGCCTCCCTCAC < 41bp 0.424637110982564 0.779880201108294 0.78991574 0.8070972 prediction 0.559760402216588 Functional Gain - TSPYL1 ENSG00000189241 CDS Human protein_coding chr6:116600825 chr6:116600829 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_103817 0 0 0 0 1 TSPYL1 chr6:116600894 5'GT 116600894 Upstream 66bp
chr12 58018385 58018385 1 + C G rs540622978 58018384 + 58018364 58018404 41 ATGACTGTGGTCTGCCGCACCCGGAGGTGGGCATAGAGATG ATGACTGTGGTCTGCCGCACCGGGAGGTGGGCATAGAGATG < 41bp 0.546649102061725 0.82652399934887 0.81114995 0.8282974 prediction 0.559749794574289 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58018384 chr12:58018385 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_103818 0 0 0 0 1 SLC26A10 chr12:58018389 5'GT 58018389 Upstream 5bp
chr15 102515245 102515245 1 + C G rs548605852 102515244 + 102515224 102515264 41 GCTCCCAGGGAAGTGGTTGACCCCTCCGGTGGCCGGGCCAC GCTCCCAGGGAAGTGGTTGACGCCTCCGGTGGCCGGGCCAC < 41bp 0.503871377978211 0.783665016774619 0.15509889 0.32535926 prediction 0.559587277592815 Functional Gain - WASH3P ENSG00000185596 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102515244 chr15:102515245 . . 0 22 hm5C_associated_SNPs_103822 0 0 1 3 2 WASH3P chr15:102515216 3'AG 102515216 Downstream 30bp
chr15 102515245 102515245 1 + C G rs548605852 102515244 + 102515224 102515264 41 GCTCCCAGGGAAGTGGTTGACCCCTCCGGTGGCCGGGCCAC GCTCCCAGGGAAGTGGTTGACGCCTCCGGTGGCCGGGCCAC < 41bp 0.503871377978211 0.783665016774619 0.15509889 0.32535926 prediction 0.559587277592815 Functional Gain - WASH3P ENSG00000185596 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102515244 chr15:102515245 . . 0 22 hm5C_associated_SNPs_103822 0 0 1 3 2 WASH3P chr15:102515221 3'AG 102515221 Downstream 25bp
chr16 72050945 72050945 1 + C A rs61741731 72050941 + 72050921 72050961 41 AGGTATGGATTTAACAGTCACGGGCTTTCAGTGGTGGAACA AGGTATGGATTTAACAGTCACGGGATTTCAGTGGTGGAACA < 41bp 0.627232196898895 0.90702399780566 0.35101926 0.86393166 prediction 0.559583601813529 Functional Gain - DHODH ENSG00000102967 CDS Human protein_coding chr16:72050941 chr16:72050945 nonsynonymous SNV 0.604 1 25 hm5C_associated_SNPs_103823 1 0 0 0 2 DHODH chr16:72050923 3'AG 72050923 Downstream 23bp
chr16 72050945 72050945 1 + C A rs61741731 72050941 + 72050921 72050961 41 AGGTATGGATTTAACAGTCACGGGCTTTCAGTGGTGGAACA AGGTATGGATTTAACAGTCACGGGATTTCAGTGGTGGAACA < 41bp 0.627232196898895 0.90702399780566 0.35101926 0.86393166 prediction 0.559583601813529 Functional Gain - DHODH ENSG00000102967 CDS Human protein_coding chr16:72050941 chr16:72050945 nonsynonymous SNV 0.604 1 25 hm5C_associated_SNPs_103823 1 0 0 0 2 DHODH chr16:72051005 5'GT 72051005 Upstream 61bp
chr12 53800463 53800463 1 + T A LUSC 53800459 + 53800439 53800479 41 AGAGGAAGGAGAAAACAGCCCAGATGCCCAACCCCAAGCCG AGAGGAAGGAGAAAACAGCCCAGAAGCCCAACCCCAAGCCG < 41bp 0.465238712976177 0.779758842319156 0.5940587 0.5350113 prediction 0.559517684638311 Functional Gain - SP1 ENSG00000185591 CDS Human protein_coding chr12:53800459 chr12:53800463 nonsynonymous SNV 0.986 1 25 hm5C_associated_SNPs_103826 0 0 1 0 2 SP1 chr12:53800369 3'AG 53800369 Downstream 95bp
chr12 53800463 53800463 1 + T A LUSC 53800459 + 53800439 53800479 41 AGAGGAAGGAGAAAACAGCCCAGATGCCCAACCCCAAGCCG AGAGGAAGGAGAAAACAGCCCAGAAGCCCAACCCCAAGCCG < 41bp 0.465238712976177 0.779758842319156 0.5940587 0.5350113 prediction 0.559517684638311 Functional Gain - SP1 ENSG00000185591 CDS Human protein_coding chr12:53800459 chr12:53800463 nonsynonymous SNV 0.986 1 25 hm5C_associated_SNPs_103826 0 0 1 0 2 SP1 chr12:53800537 5'GT 53800537 Upstream 75bp
chr9 90388107 90388107 1 + C G LUAD 90388106 + 90388086 90388126 41 GAACCTCTGCTTCATGACATCCGCAAATCTGTGGATTGGAG GAACCTCTGCTTCATGACATCGGCAAATCTGTGGATTGGAG < 41bp 0.525234610648603 0.804972946743639 0.055123508 0.24839911 prediction 0.559476672190073 Functional Gain - CTSL3P ENSG00000188029 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:90388106 chr9:90388107 . . 0 22 hm5C_associated_SNPs_103829 0 0 0 0 2 CTSL3P chr9:90388014 3'AG 90388014 Downstream 94bp
chr9 90388107 90388107 1 + C G LUAD 90388106 + 90388086 90388126 41 GAACCTCTGCTTCATGACATCCGCAAATCTGTGGATTGGAG GAACCTCTGCTTCATGACATCGGCAAATCTGTGGATTGGAG < 41bp 0.525234610648603 0.804972946743639 0.055123508 0.24839911 prediction 0.559476672190073 Functional Gain - CTSL3P ENSG00000188029 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:90388106 chr9:90388107 . . 0 22 hm5C_associated_SNPs_103829 0 0 0 0 2 CTSL3P chr9:90388160 5'GT 90388160 Upstream 54bp
chr14 24675883 24675883 1 + C A COAD 24675879 + 24675859 24675899 41 CTTGCTGGCAAGTGGTTCTCCCAGCTGACCCTGGGCATTGC CTTGCTGGCAAGTGGTTCTCCCAGATGACCCTGGGCATTGC < 41bp 0.596537672317876 0.87623892323114 0.45590457 0.5294384 prediction 0.559402501826527 Functional Gain - TSSK4 ENSG00000139908 CDS Human protein_coding chr14:24675879 chr14:24675883 nonsynonymous SNV 0.984 0 25 hm5C_associated_SNPs_103835 0 0 0 0 1 TSSK4 chr14:24675929 5'GT 24675929 Upstream 47bp
chr19 55107336 55107336 1 + C G rs34058364 55107335 + 55107315 55107355 41 CGGGGGCCAGTACAGATGCTCCGGTGCATACAACCTCTCCT CGGGGGCCAGTACAGATGCTCGGGTGCATACAACCTCTCCT < 41bp 0.471791972257204 0.779675974724296 0.8695682 0.9369277 prediction 0.559351949448592 Functional Gain - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55107335 chr19:55107336 synonymous SNV . 0 22 hm5C_associated_SNPs_103837 0 0 0 0 1 LILRA1 chr19:55107400 5'GT 55107400 Upstream 65bp
chr16 14755821 14755821 1 + C A STAD 14755817 + 14755797 14755837 41 TCCCCCAGGCTGAGTCTGCTCTACCTGTACCTGTTTGACTA TCCCCCAGGCTGAGTCTGCTCTACATGTACCTGTTTGACTA < 41bp 0.642863320062536 0.922523056993654 0.05938545 0.61397475 prediction 0.559319473862237 Functional Gain - BFAR ENSG00000103429 CDS Human protein_coding chr16:14755817 chr16:14755821 nonsynonymous SNV 0.959 3 25 hm5C_associated_SNPs_103838 0 0 1 0 1 BFAR chr16:14755749 3'AG 14755749 Downstream 73bp
chr6 33380056 33380056 1 + C G rs572492088 33380055 + 33380035 33380075 41 GATGCAATGGCGCAGCCCCCCCGGCTGAGCCGCTCTGGTGC GATGCAATGGCGCAGCCCCCCGGGCTGAGCCGCTCTGGTGC < 41bp 0.532695610086517 0.812337948443728 0.67748356 0.94147766 prediction 0.559284676714422 Functional Gain - PHF1 ENSG00000112511 CDS Human protein_coding chr6:33380055 chr6:33380056 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_103839 0 0 0 0 1 PHF1 chr6:33380025 3'AG 33380025 Downstream 32bp
chr1 18434635 18434635 1 + C A rs540719862 18434631 + 18434611 18434651 41 CTCCCGGGCACCATGCGAACCGCCCCGAGCCTCCGCCGCTG CTCCCGGGCACCATGCGAACCGCCACGAGCCTCCGCCGCTG < 41bp 0.615817064290786 0.895377988888633 0.13719815 0.1990233 prediction 0.559121849195695 Functional Gain - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18434631 chr1:18434635 nonsynonymous SNV 0.300 1 25 hm5C_associated_SNPs_103844 0 0 0 0 1 IGSF21 chr1:18434692 5'GT 18434692 Upstream 58bp
chr10 76970648 76970648 1 + T G rs556059717 76970646 + 76970626 76970666 41 ACCGCGAGCGTGCCAAGCGGCTTCAGCAGCTAGCGGAGCGG ACCGCGAGCGTGCCAAGCGGCTGCAGCAGCTAGCGGAGCGG < 41bp 0.503466156564341 0.783015004083105 0.16894391 0.494745 prediction 0.559097695037528 Functional Gain - VDAC2 ENSG00000165637 UTR5 Human protein_coding chr10:76970646 chr10:76970648 . . 0 23 hm5C_associated_SNPs_103846 0 0 1 0 1 VDAC2 chr10:76970696 5'GT 76970696 Upstream 49bp
chr4 17600138 17600138 1 + C A OV 17600134 + 17600114 17600154 41 GGCTGATGCGCTCTGTTACGCACACACGTTTAACCCGAAGG GGCTGATGCGCTCTGTTACGCACAAACGTTTAACCCGAAGG < 41bp 0.368018928152792 0.779473357434069 0.09679735 0.11753321 prediction 0.558946714868137 Functional Gain - LAP3 ENSG00000002549 CDS Human protein_coding chr4:17600134 chr4:17600138 nonsynonymous SNV 0.880 1 25 hm5C_associated_SNPs_103851 0 0 1 0 2 LAP3 chr4:17600079 3'AG 17600079 Downstream 60bp
chr4 17600138 17600138 1 + C A OV 17600134 + 17600114 17600154 41 GGCTGATGCGCTCTGTTACGCACACACGTTTAACCCGAAGG GGCTGATGCGCTCTGTTACGCACAAACGTTTAACCCGAAGG < 41bp 0.368018928152792 0.779473357434069 0.09679735 0.11753321 prediction 0.558946714868137 Functional Gain - LAP3 ENSG00000002549 CDS Human protein_coding chr4:17600134 chr4:17600138 nonsynonymous SNV 0.880 1 25 hm5C_associated_SNPs_103851 0 0 1 0 2 LAP3 chr4:17600181 5'GT 17600181 Upstream 44bp
chr7 150020625 150020625 1 - G T rs534922901 150020629 - 150020609 150020649 41 CTGAGGGGTGGAGCCGGCAGCCTGCGGAGCCACTGGCCAAG CTGAGGGGTGGAGCCGGCAGCCTGAGGAGCCACTGGCCAAG < 41bp 0.464450804276702 0.779445001121449 0.8791398 0.89033467 prediction 0.558890002242897 Functional Gain - ACTR3C;LRRC61 ENSG00000106526 CDS Human protein_coding chr7:150020629 chr7:150020625 nonsynonymous SNV 0.073 2 25 hm5C_associated_SNPs_103855 0 0 1 0 1 ACTR3C;LRRC61 chr7:150020558 5'GT 150020558 Upstream 68bp
chr20 61959724 61959724 1 + C A LUAD 61959720 + 61959700 61959740 41 GACTCCTTCCACGAGAACACCAGGCCCCCCATGCCCATCTT GACTCCTTCCACGAGAACACCAGGACCCCCATGCCCATCTT < 41bp 0.386424837854346 0.779403855248466 0.6542045 0.85311836 prediction 0.558807710496932 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61959720 chr20:61959724 nonsynonymous SNV 0.074 4 25 hm5C_associated_SNPs_103858 0 0 0 0 1 COL20A1 chr20:61959683 3'AG 61959683 Downstream 42bp
chr19 1106615 1106615 1 + T A rs713041 1106611 + 1106591 1106631 41 CGCCCGAGCCCCTGCCCACGCCCTTGGAGCCTTCCACCGGC CGCCCGAGCCCCTGCCCACGCCCTAGGAGCCTTCCACCGGC < 41bp 0.476321083568727 0.77937685629884 0.1228064 0.12528896 prediction 0.558753712597681 Functional Gain - GPX4 ENSG00000167468 CDS Human protein_coding chr19:1106611 chr19:1106615 stopgain . 0 25 hm5C_associated_SNPs_103859 0 0 1 0 1 GPX4 chr19:1106539 3'AG 1106539 Downstream 77bp
chr1 65830417 65830417 1 + T C UCEC 65830415 + 65830395 65830435 41 TTTAGTAACCTAAAGGACAACTTGAAAGACACCCTCAAAGA TTTAGTAACCTAAAGGACAACTCGAAAGACACCCTCAAAGA < 41bp 0.514918868255418 0.794241268318801 0.007892489 0.19878447 prediction 0.558644800126765 Functional Gain - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65830415 chr1:65830417 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_103866 0 0 0 0 2 DNAJC6 chr1:65830318 3'AG 65830318 Downstream 100bp
chr1 65830417 65830417 1 + T C UCEC 65830415 + 65830395 65830435 41 TTTAGTAACCTAAAGGACAACTTGAAAGACACCCTCAAAGA TTTAGTAACCTAAAGGACAACTCGAAAGACACCCTCAAAGA < 41bp 0.514918868255418 0.794241268318801 0.007892489 0.19878447 prediction 0.558644800126765 Functional Gain - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65830415 chr1:65830417 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_103866 0 0 0 0 2 DNAJC6 chr1:65830468 5'GT 65830468 Upstream 52bp
chr19 17000065 17000065 1 + C A rs575614575 17000061 + 17000041 17000081 41 TCAGCCTGTCTGGCGGCACCCAGACCCCCAGCGTCTACGAC TCAGCCTGTCTGGCGGCACCCAGAACCCCAGCGTCTACGAC < 41bp 0.417297656961114 0.77929387115567 0.75607586 0.87340415 prediction 0.558587742311341 Functional Gain - F2RL3 ENSG00000127533 CDS Human protein_coding chr19:17000061 chr19:17000065 nonsynonymous SNV 0.130 0 25 hm5C_associated_SNPs_103867 0 0 0 0 1 F2RL3 chr19:17000109 5'GT 17000109 Upstream 45bp
chr10 92663014 92663014 1 + C A PAAD 92663010 + 92662990 92663030 41 AGAGATCATACTCCCAAGAACAGGCTTTGACCCTTCTTTAA AGAGATCATACTCCCAAGAACAGGATTTGACCCTTCTTTAA < 41bp 0.396481094387788 0.779286640761411 0.21069604 0.30003482 prediction 0.558573281522821 Functional Gain - RPP30 ENSG00000148688 CDS Human protein_coding chr10:92663010 chr10:92663014 nonsynonymous SNV 0.025 1 25 hm5C_associated_SNPs_103868 0 0 0 0 2 RPP30 chr10:92662949 3'AG 92662949 Downstream 66bp
chr10 92663014 92663014 1 + C A PAAD 92663010 + 92662990 92663030 41 AGAGATCATACTCCCAAGAACAGGCTTTGACCCTTCTTTAA AGAGATCATACTCCCAAGAACAGGATTTGACCCTTCTTTAA < 41bp 0.396481094387788 0.779286640761411 0.21069604 0.30003482 prediction 0.558573281522821 Functional Gain - RPP30 ENSG00000148688 CDS Human protein_coding chr10:92663010 chr10:92663014 nonsynonymous SNV 0.025 1 25 hm5C_associated_SNPs_103868 0 0 0 0 2 RPP30 chr10:92663033 5'GT 92663033 Upstream 20bp
chr15 28901009 28901009 1 + C G LUSC 28901005 + 28900985 28901025 41 TGGGGGGCCTCATGGCGGTCCTGGCTGTGGTTGGAGGCATC TGGGGGGCCTCATGGCGGTCCTGGGTGTGGTTGGAGGCATC < 41bp 0.512920096814124 0.792200759940561 0.52629757 0.6934201 prediction 0.558561326252873 Functional Gain - HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28901005 chr15:28901009 . . 0 25 hm5C_associated_SNPs_103869 0 0 0 0 1 HERC2P9 chr15:28900942 3'AG 28900942 Downstream 68bp
chr12 9083485 9083485 1 + C A LIHC 9083481 + 9083461 9083501 41 ATGTGGGCATGAACCTGACACGGACAGCCACACCTGCGCCC ATGTGGGCATGAACCTGACACGGAAAGCCACACCTGCGCCC < 41bp 0.366035008691736 0.779279050883247 0.15396541 0.28883725 prediction 0.558558101766495 Functional Gain - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9083481 chr12:9083485 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_103870 0 0 0 0 1 PHC1 chr12:9083523 5'GT 9083523 Upstream 39bp
chr9 136305517 136305517 1 + T G CHOL 136305514 + 136305494 136305534 41 GCTGGGAAGATGAGCATCTCCCCTAACACCACCTACCCCTC GCTGGGAAGATGAGCATCTCCCCGAACACCACCTACCCCTC < 41bp 0.41141234809008 0.779261119002414 0.10590166 0.3038178 prediction 0.558522238004827 Functional Gain - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136305514 chr9:136305517 synonymous SNV . 0 24 hm5C_associated_SNPs_103871 0 0 1 0 1 ADAMTS13 chr9:136305465 3'AG 136305465 Downstream 53bp
chr22 21989038 21989038 1 + C A SARC 21989034 + 21989014 21989054 41 TGTGGGATTCGCTGGGTAGCCAGACCAGCTTTCAGTGGACA TGTGGGATTCGCTGGGTAGCCAGAACAGCTTTCAGTGGACA < 41bp 0.375270855420839 0.779254329359779 0.8410696 0.8018768 prediction 0.558508658719557 Functional Gain - CCDC116 ENSG00000161180 CDS Human protein_coding chr22:21989034 chr22:21989038 nonsynonymous SNV 0.880 2 25 hm5C_associated_SNPs_103872 0 0 0 0 1 CCDC116 chr22:21988974 3'AG 21988974 Downstream 65bp
chr1 203274801 203274801 1 + C A PAAD 203274797 + 203274777 203274817 41 GCCGCCGTGGGCTTCCTCTCCAGCCTCCTGAGGACCCGGGG GCCGCCGTGGGCTTCCTCTCCAGCATCCTGAGGACCCGGGG < 41bp 0.625833849821886 0.905003588756997 0.53911585 0.1756489 prediction 0.558339477870222 Functional Gain - BTG2 ENSG00000159388 CDS Human protein_coding chr1:203274797 chr1:203274801 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_103876 0 0 1 1 1 BTG2 chr1:203274876 5'GT 203274876 Upstream 76bp
chr17 38249328 38249328 1 + C A HNSC 38249324 + 38249304 38249344 41 AGGGGGCAGCGGCAGAAGGCCGGCCGGGCGGGTCACTGGGC AGGGGGCAGCGGCAGAAGGCCGGCAGGGCGGGTCACTGGGC < 41bp 0.62829409384222 0.90745983382404 0.84754324 0.7601396 prediction 0.558331479963641 Functional Gain - THRA ENSG00000126351 CDS Human protein_coding chr17:38249324 chr17:38249328 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_103879 0 0 1 0 1 THRA chr17:38249273 3'AG 38249273 Downstream 56bp
chr2 26676349 26676349 1 + C G rs200824609 26676348 + 26676328 26676368 41 GGAGGAGACCCCACCCTCCCCCTGGGTCATCCACCCCAATG GGAGGAGACCCCACCCTCCCCGTGGGTCATCCACCCCAATG < 41bp 0.467030406971788 0.779154810533137 0.19633958 0.8319285 prediction 0.558309621066274 Functional Gain - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26676348 chr2:26676349 synonymous SNV . 0 22 hm5C_associated_SNPs_103881 0 0 0 0 1 DRC1 chr2:26676417 5'GT 26676417 Upstream 69bp
chr16 20482481 20482481 1 + C G KIRP 20482480 + 20482460 20482500 41 CTAGTGGGACCAGTGGTCTTCCCAAGATGGCAGAACATTCC CTAGTGGGACCAGTGGTCTTCGCAAGATGGCAGAACATTCC < 41bp 0.467850096119855 0.779142703594551 0.21782395 0.29144847 prediction 0.558285407189101 Functional Gain - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20482480 chr16:20482481 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_103883 0 0 0 0 2 ACSM2A chr16:20482395 3'AG 20482395 Downstream 87bp
chr16 20482481 20482481 1 + C G KIRP 20482480 + 20482460 20482500 41 CTAGTGGGACCAGTGGTCTTCCCAAGATGGCAGAACATTCC CTAGTGGGACCAGTGGTCTTCGCAAGATGGCAGAACATTCC < 41bp 0.467850096119855 0.779142703594551 0.21782395 0.29144847 prediction 0.558285407189101 Functional Gain - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20482480 chr16:20482481 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_103883 0 0 0 0 2 ACSM2A chr16:20482538 5'GT 20482538 Upstream 58bp
chr6 167708143 167708143 1 + T A LUSC 167708139 + 167708119 167708159 41 AAGGGGACCATCATCCTCTCCATGTGTGGCTACGTGGCCTT AAGGGGACCATCATCCTCTCCATGAGTGGCTACGTGGCCTT < 41bp 0.556237373257375 0.835379427340239 0.26225966 0.21829206 prediction 0.558284108165729 Functional Gain - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167708139 chr6:167708143 nonsynonymous SNV 0.985 1 25 hm5C_associated_SNPs_103884 0 0 1 0 1 UNC93A chr6:167708186 5'GT 167708186 Upstream 44bp
chr16 55361260 55361260 1 + C A LUAD 55361256 + 55361236 55361276 41 CAGGGAGTTTTACATCCAGCCTGGCACAACCAGGAGCCTAT CAGGGAGTTTTACATCCAGCCTGGAACAACCAGGAGCCTAT < 41bp 0.36319768378654 0.779091472124875 0.091115385 0.1700924 prediction 0.55818294424975 Functional Gain - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55361256 chr16:55361260 nonsynonymous SNV 0.937 3 25 hm5C_associated_SNPs_103888 0 0 0 0 2 IRX6 chr16:55361208 3'AG 55361208 Downstream 53bp
chr16 55361260 55361260 1 + C A LUAD 55361256 + 55361236 55361276 41 CAGGGAGTTTTACATCCAGCCTGGCACAACCAGGAGCCTAT CAGGGAGTTTTACATCCAGCCTGGAACAACCAGGAGCCTAT < 41bp 0.36319768378654 0.779091472124875 0.091115385 0.1700924 prediction 0.55818294424975 Functional Gain - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55361256 chr16:55361260 nonsynonymous SNV 0.937 3 25 hm5C_associated_SNPs_103888 0 0 0 0 2 IRX6 chr16:55361317 5'GT 55361317 Upstream 58bp
chr1 41223953 41223953 1 + C A COAD 41223949 + 41223929 41223969 41 CTGGGCAGATCATCATCGCACAGCCTCAGCAGGGCCAGGTC CTGGGCAGATCATCATCGCACAGCATCAGCAGGGCCAGGTC < 41bp 0.629941474981979 0.909027232311875 0.08751887 0.114628226 prediction 0.558171514659792 Functional Gain - NFYC ENSG00000066136 CDS Human protein_coding chr1:41223949 chr1:41223953 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103889 0 0 0 0 1 NFYC chr1:41223966 5'GT 41223966 Upstream 14bp
chr6 161134100 161134100 1 + T A LUAD 161134096 + 161134076 161134116 41 GACAACGATCCGCAGGGGCCCTGGTGCTATACTACTGATCC GACAACGATCCGCAGGGGCCCTGGAGCTATACTACTGATCC < 41bp 0.563178210735578 0.84225790379641 0.43024662 0.54133135 prediction 0.558159386121664 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161134096 chr6:161134100 nonsynonymous SNV 0.934 4 25 hm5C_associated_SNPs_103890 0 0 0 0 2 PLG chr6:161134018 3'AG 161134018 Downstream 83bp
chr6 161134100 161134100 1 + T A LUAD 161134096 + 161134076 161134116 41 GACAACGATCCGCAGGGGCCCTGGTGCTATACTACTGATCC GACAACGATCCGCAGGGGCCCTGGAGCTATACTACTGATCC < 41bp 0.563178210735578 0.84225790379641 0.43024662 0.54133135 prediction 0.558159386121664 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161134096 chr6:161134100 nonsynonymous SNV 0.934 4 25 hm5C_associated_SNPs_103890 0 0 0 0 2 PLG chr6:161134157 5'GT 161134157 Upstream 58bp
chr6 117591781 117591781 1 + C A rs200640805 117591777 + 117591757 117591797 41 GCGCGTACCAGGCGCCAGTGCCCCCGCCGCTGGGCAGCCCT GCGCGTACCAGGCGCCAGTGCCCCAGCCGCTGGGCAGCCCT < 41bp 0.373165778008926 0.779046523589807 0.34598905 0.2808454 prediction 0.558093047179613 Functional Gain - VGLL2 ENSG00000170162 CDS Human protein_coding chr6:117591777 chr6:117591781 nonsynonymous SNV 0.894 1 25 hm5C_associated_SNPs_103892 0 0 0 0 1 VGLL2 chr6:117591706 3'AG 117591706 Downstream 76bp
chr8 10388999 10388999 1 + C G KIRP 10388995 + 10388975 10389015 41 TGCCCATCTGCCTCCCCACGCAGCCCGGCCCTGCCACATGG TGCCCATCTGCCTCCCCACGCAGCGCGGCCCTGCCACATGG < 41bp 0.479544422067334 0.779015872206111 0.05160165 0.19783932 prediction 0.558031744412223 Functional Gain - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10388995 chr8:10388999 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_103896 0 0 0 0 1 PRSS55 chr8:10389055 5'GT 10389055 Upstream 57bp
chr19 34710310 34710310 1 + T C UCEC 34710308 + 34710288 34710328 41 TATCATAGCTCCAGGTGCTCCTTCAGCTCCAAGGAGAGGGC TATCATAGCTCCAGGTGCTCCTCCAGCTCCAAGGAGAGGGC < 41bp 0.536569273330268 0.815576752349665 0.067208916 0.9316491 prediction 0.558014958038793 Functional Gain - LSM14A ENSG00000257103 CDS Human protein_coding chr19:34710308 chr19:34710310 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_103898 0 0 1 0 1 LSM14A chr19:34710296 3'AG 34710296 Downstream 15bp
chr6 117591772 117591772 1 + C G LUAD 117591771 + 117591751 117591791 41 GGAATAGCGCGTACCAGGCGCCAGTGCCCCCGCCGCTGGGC GGAATAGCGCGTACCAGGCGCGAGTGCCCCCGCCGCTGGGC < 41bp 0.471038547826821 0.778963819014862 0.108171195 0.4933073 prediction 0.557927638029724 Functional Gain - VGLL2 ENSG00000170162 CDS Human protein_coding chr6:117591771 chr6:117591772 nonsynonymous SNV 0.927 1 22 hm5C_associated_SNPs_103901 0 0 0 0 1 VGLL2 chr6:117591706 3'AG 117591706 Downstream 67bp
chr10 114045943 114045943 1 + T A HNSC 114045939 + 114045919 114045959 41 TCCTGCACCTACCACTCCACCTACTTGGTGAACCAGGCTGC TCCTGCACCTACCACTCCACCTACATGGTGAACCAGGCTGC < 41bp 0.434608795435651 0.778953929880001 0.05282113 0.2888033 prediction 0.557907859760002 Functional Gain - TECTB ENSG00000119913 CDS Human protein_coding chr10:114045939 chr10:114045943 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_103902 0 0 0 0 1 TECTB chr10:114045971 5'GT 114045971 Upstream 29bp
chr12 110957688 110957688 1 + C G HNSC 110957687 + 110957667 110957707 41 AACAAAGTAGAGCATCTTCACCACAGTCACTGTGTCTTTCA AACAAAGTAGAGCATCTTCACGACAGTCACTGTGTCTTTCA < 41bp 0.486211455967416 0.778946104255853 0.17441073 0.39467114 prediction 0.557892208511705 Functional Gain - RAD9B ENSG00000151164 CDS Human protein_coding chr12:110957687 chr12:110957688 nonsynonymous SNV 0.600 2 22 hm5C_associated_SNPs_103904 0 0 0 0 2 RAD9B chr12:110957599 3'AG 110957599 Downstream 90bp
chr12 110957688 110957688 1 + C G HNSC 110957687 + 110957667 110957707 41 AACAAAGTAGAGCATCTTCACCACAGTCACTGTGTCTTTCA AACAAAGTAGAGCATCTTCACGACAGTCACTGTGTCTTTCA < 41bp 0.486211455967416 0.778946104255853 0.17441073 0.39467114 prediction 0.557892208511705 Functional Gain - RAD9B ENSG00000151164 CDS Human protein_coding chr12:110957687 chr12:110957688 nonsynonymous SNV 0.600 2 22 hm5C_associated_SNPs_103904 0 0 0 0 2 RAD9B chr12:110957721 5'GT 110957721 Upstream 34bp
chr22 39497284 39497284 1 + T A UCEC 39497280 + 39497260 39497300 41 ATTTGCTTTATTAACGAGATCAAGTCCATGGGACTGGACGA ATTTGCTTTATTAACGAGATCAAGACCATGGGACTGGACGA < 41bp 0.535541963517464 0.814471806481147 0.046186298 0.037801564 prediction 0.557859685927365 Functional Gain - APOBEC3H ENSG00000100298 CDS Human protein_coding chr22:39497280 chr22:39497284 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_103905 0 0 0 0 1 APOBEC3H chr22:39497242 3'AG 39497242 Downstream 43bp
chrX 135291488 135291488 1 + C A OV 135291484 + 135291464 135291504 41 CACGGGAAACGCTTGCCTCTCACCCTGTTTCCCAGCGCCAA CACGGGAAACGCTTGCCTCTCACCATGTTTCCCAGCGCCAA < 41bp 0.38766918871351 0.778903738631012 0.08393836 0.14797238 prediction 0.557807477262024 Functional Gain - FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291484 chrX:135291488 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_103908 0 0 0 0 1 FHL1 chrX:135291402 3'AG 135291402 Downstream 87bp
chr1 215259724 215259724 1 + C A LUAD 215259720 + 215259700 215259740 41 GTTGTTGTCAGTGGCGGCACCTGACTTGCTGGATCCTAAAT GTTGTTGTCAGTGGCGGCACCTGAATTGCTGGATCCTAAAT < 41bp 0.385357271563913 0.778870152614478 0.090029925 0.4451248 prediction 0.557740305228955 Functional Gain - KCNK2 ENSG00000082482 CDS Human protein_coding chr1:215259720 chr1:215259724 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_103911 0 0 0 0 1 KCNK2 chr1:215259711 3'AG 215259711 Downstream 14bp
chr1 55207175 55207175 1 + C G GBM 55207174 + 55207154 55207194 41 CTCCGGGGGAGAAAGGTGTACCAGATACGATGACTAAGCCA CTCCGGGGGAGAAAGGTGTACGAGATACGATGACTAAGCCA < 41bp 0.52902613463647 0.807862247402173 0.33805925 0.6429627 prediction 0.557672225531406 Functional Gain - TTC4 ENSG00000243725 CDS Human protein_coding chr1:55207174 chr1:55207175 nonsynonymous SNV 0.969 1 22 hm5C_associated_SNPs_103914 0 0 1 0 1 TTC4 chr1:55207084 3'AG 55207084 Downstream 92bp
chr9 134165737 134165737 1 + T G UCEC 134165735 + 134165715 134165755 41 TCCATGGTCAAGCTCATCGGCATCACGGGCCACGGCATCCC TCCATGGTCAAGCTCATCGGCAGCACGGGCCACGGCATCCC < 41bp 0.571761914611518 0.850587043792646 0.24551448 0.42187488 prediction 0.557650258362257 Functional Gain - PLPP7 ENSG00000160539 CDS Human protein_coding chr9:134165735 chr9:134165737 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_103915 0 0 0 0 1 PLPP7 chr9:134165835 5'GT 134165835 Upstream 99bp
chr8 143560847 143560847 1 + C G rs200224393 143560846 + 143560826 143560866 41 GTGCGGCACCCAGCGGTGTCCCGGTGAGGCCCCTCCTACCT GTGCGGCACCCAGCGGTGTCCGGGTGAGGCCCCTCCTACCT < 41bp 0.542148901133606 0.820968375182991 0.49019808 0.8906636 prediction 0.55763894809877 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143560846 chr8:143560847 synonymous SNV . 0 22 hm5C_associated_SNPs_103916 0 0 0 0 1 ADGRB1 chr8:143560848 5'GT 143560848 Upstream 2bp
chr16 90160820 90160820 1 + C A rs62052672 90160816 + 90160796 90160836 41 CCTACCACGGGGACAGCCACCTGCCGCTGGAGCGCGTCAAC CCTACCACGGGGACAGCCACCTGCAGCTGGAGCGCGTCAAC < 41bp 0.616002529683685 0.894817697052532 0.34128788 0.55822694 prediction 0.557630334737695 Functional Gain - PRDM7;FAM157B ENSG00000261812 CDS Human transcribed_unprocessed_pseudogene chr16:90160816 chr16:90160820 unknown . 0 25 hm5C_associated_SNPs_103918 0 0 0 0 2 PRDM7;FAM157B chr16:90160750 3'AG 90160750 Downstream 71bp
chr16 90160820 90160820 1 + C A rs62052672 90160816 + 90160796 90160836 41 CCTACCACGGGGACAGCCACCTGCCGCTGGAGCGCGTCAAC CCTACCACGGGGACAGCCACCTGCAGCTGGAGCGCGTCAAC < 41bp 0.616002529683685 0.894817697052532 0.34128788 0.55822694 prediction 0.557630334737695 Functional Gain - PRDM7;FAM157B ENSG00000261812 CDS Human transcribed_unprocessed_pseudogene chr16:90160816 chr16:90160820 unknown . 0 25 hm5C_associated_SNPs_103918 0 0 0 0 2 PRDM7;FAM157B chr16:90160858 5'GT 90160858 Upstream 39bp
chr12 6568066 6568066 1 + T A rs142002557 6568062 + 6568042 6568082 41 CTTACACCTGCCAGGTCACACACATCTCTCTGGAGGAGCCC CTTACACCTGCCAGGTCACACACAACTCTCTGGAGGAGCCC < 41bp 0.466579317336003 0.778814137921658 0.37445354 0.73868173 prediction 0.557628275843317 Functional Gain - TAPBPL ENSG00000139192 CDS Human protein_coding chr12:6568062 chr12:6568066 nonsynonymous SNV 0.954 0 25 hm5C_associated_SNPs_103919 0 0 0 0 1 TAPBPL chr12:6568113 5'GT 6568113 Upstream 48bp
chr16 3108229 3108229 1 + C A rs59807543 3108225 + 3108205 3108245 41 CCCTCCGGACAGCTGGTGTCCCCGCGACCCGCACGGCTGCA CCCTCCGGACAGCTGGTGTCCCCGAGACCCGCACGGCTGCA < 41bp 0.378223719734869 0.778804786894173 0.8028996 0.73956454 prediction 0.557609573788346 Functional Gain - MMP25 ENSG00000008516 CDS Human protein_coding chr16:3108225 chr16:3108229 synonymous SNV . 0 25 hm5C_associated_SNPs_103921 0 0 1 0 1 MMP25 chr16:3108182 3'AG 3108182 Downstream 48bp
chr20 34487475 34487475 1 + C G rs553915565 34487474 + 34487454 34487494 41 CACTGGAGCCAGAAGAGAGCCCGGGAAAGAGGCATGTCCAA CACTGGAGCCAGAAGAGAGCCGGGGAAAGAGGCATGTCCAA < 41bp 0.531917496325819 0.810677321196161 0.5523232 0.9292669 prediction 0.557519649740684 Functional Gain - PHF20 ENSG00000025293 CDS Human protein_coding chr20:34487474 chr20:34487475 nonsynonymous SNV 0.979 1 22 hm5C_associated_SNPs_103923 0 0 1 0 1 PHF20 chr20:34487570 5'GT 34487570 Upstream 96bp
chr15 100340140 100340140 1 - G C PAAD 100340144 - 100340124 100340164 41 GGAGGAGTCGGCAGAGCAGGCAGACCAAGGAGTTCATCTTC GGAGGAGTCGGCAGAGCAGGCAGAGCAAGGAGTTCATCTTC < 41bp 0.494543477788631 0.77875242405294 0.9072627 0.9026381 prediction 0.55750484810588 Functional Gain - DNM1P46 ENSG00000182397 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:100340144 chr15:100340140 . . 0 25 hm5C_associated_SNPs_103924 0 0 0 0 1 DNM1P46 chr15:100340145 3'AG 100340145 Downstream 6bp
chr5 78915478 78915478 1 + C G LUAD 78915477 + 78915457 78915497 41 CCAGTGAACAAGAGCATGTTCCCAAACTCAATTTTGGGTCG CCAGTGAACAAGAGCATGTTCGCAAACTCAATTTTGGGTCG < 41bp 0.521275522289198 0.800016041352172 0.06624183 0.18781304 prediction 0.557481038125948 Functional Gain - PAPD4 ENSG00000164329 CDS Human protein_coding chr5:78915477 chr5:78915478 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_103925 0 0 1 0 1 PAPD4 chr5:78915435 3'AG 78915435 Downstream 44bp
chr4 74719119 74719119 1 + C G TGCT 74719118 + 74719098 74719138 41 TCCCGCCTCACCCGCGCCACCCGCCAGGAGATGCTGTTCTT TCCCGCCTCACCCGCGCCACCGGCCAGGAGATGCTGTTCTT < 41bp 0.527058749276783 0.805760762396584 0.07992783 0.15048122 prediction 0.557404026239601 Functional Gain - PF4V1 ENSG00000109272 CDS Human protein_coding chr4:74719118 chr4:74719119 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_103929 0 0 0 0 1 PF4V1 chr4:74719179 5'GT 74719179 Upstream 61bp
chrX 54578063 54578063 1 + C G BLCA 54578062 + 54578042 54578082 41 TGGATGCTCCAGGCATTGTCCCAGGGCCCAACTCAGAGGTG TGGATGCTCCAGGCATTGTCCGAGGGCCCAACTCAGAGGTG < 41bp 0.468220938130681 0.778698569884037 0.8915317 0.92635065 prediction 0.557397139768075 Functional Gain - GNL3L ENSG00000130119 CDS Human protein_coding chrX:54578062 chrX:54578063 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_103930 0 0 1 0 1 GNL3L chrX:54578001 3'AG 54578001 Downstream 63bp
chr18 63476993 63476993 1 + C A rs61741837 63476989 + 63476969 63477009 41 TTCCATCAAATACATCTTGTCAGGCGAAGGGGCAAGTTCCA TTCCATCAAATACATCTTGTCAGGAGAAGGGGCAAGTTCCA < 41bp 0.383635616797963 0.778689089963511 0.40647763 0.52508926 prediction 0.557378179927021 Functional Gain - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63476989 chr18:63476993 synonymous SNV . 0 25 hm5C_associated_SNPs_103932 0 0 0 0 1 CDH7 chr18:63476940 3'AG 63476940 Downstream 54bp
chr4 71068595 71068595 1 + T A STAD 71068591 + 71068571 71068611 41 CACAACCAATGTTTTCACTTCTGCTGTAGACCAAACTATTA CACAACCAATGTTTTCACTTCTGCAGTAGACCAAACTATTA < 41bp 0.457075083713921 0.778680785467444 0.0781503 0.13307175 prediction 0.557361570934889 Functional Gain - ODAM ENSG00000109205 CDS Human protein_coding chr4:71068591 chr4:71068595 synonymous SNV . 0 25 hm5C_associated_SNPs_103933 0 0 1 0 1 ODAM chr4:71068634 5'GT 71068634 Upstream 40bp
chrX 65414993 65414993 1 + C A LUSC 65414989 + 65414969 65415009 41 ACCATTCAGGTGGTCTTCTACAACCGTGCCTCCCAGCCATT ACCATTCAGGTGGTCTTCTACAACAGTGCCTCCCAGCCATT < 41bp 0.365905625105429 0.7786625286422 0.06491396 0.062109977 prediction 0.557325057284399 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65414989 chrX:65414993 nonsynonymous SNV 0.992 3 25 hm5C_associated_SNPs_103936 0 0 0 0 2 HEPH chrX:65414940 3'AG 65414940 Downstream 54bp
chrX 65414993 65414993 1 + C A LUSC 65414989 + 65414969 65415009 41 ACCATTCAGGTGGTCTTCTACAACCGTGCCTCCCAGCCATT ACCATTCAGGTGGTCTTCTACAACAGTGCCTCCCAGCCATT < 41bp 0.365905625105429 0.7786625286422 0.06491396 0.062109977 prediction 0.557325057284399 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65414989 chrX:65414993 nonsynonymous SNV 0.992 3 25 hm5C_associated_SNPs_103936 0 0 0 0 2 HEPH chrX:65415071 5'GT 65415071 Upstream 79bp
chr1 153941929 153941929 1 + C G PRAD 153941928 + 153941908 153941948 41 GCCCCAGTGCCCTGTACAACCCTGGTGAGTCTTGGTGTCAG GCCCCAGTGCCCTGTACAACCGTGGTGAGTCTTGGTGTCAG < 41bp 0.543341347742988 0.821989948737358 0.29748076 0.86985344 prediction 0.557297201988741 Functional Gain - CREB3L4 ENSG00000143578 CDS Human protein_coding chr1:153941928 chr1:153941929 nonsynonymous SNV 0.832 0 22 hm5C_associated_SNPs_103939 0 0 0 1 1 CREB3L4 chr1:153941931 5'GT 153941931 Upstream 3bp
chr1 173735378 173735378 1 + T C rs7536773 173735376 + 173735356 173735396 41 TAGCAGTACTTGGAGGCTTTCTTTATGCTGTGGGTGGCCAG TAGCAGTACTTGGAGGCTTTCTCTATGCTGTGGGTGGCCAG < 41bp 0.47863244118069 0.778626801375031 0.14735919 0.92791957 prediction 0.557253602750063 Functional Gain - KLHL20 ENSG00000076321 CDS Human protein_coding chr1:173735376 chr1:173735378 synonymous SNV . 0 23 hm5C_associated_SNPs_103941 0 0 1 0 2 KLHL20 chr1:173735285 3'AG 173735285 Downstream 94bp
chr1 173735378 173735378 1 + T C rs7536773 173735376 + 173735356 173735396 41 TAGCAGTACTTGGAGGCTTTCTTTATGCTGTGGGTGGCCAG TAGCAGTACTTGGAGGCTTTCTCTATGCTGTGGGTGGCCAG < 41bp 0.47863244118069 0.778626801375031 0.14735919 0.92791957 prediction 0.557253602750063 Functional Gain - KLHL20 ENSG00000076321 CDS Human protein_coding chr1:173735376 chr1:173735378 synonymous SNV . 0 23 hm5C_associated_SNPs_103941 0 0 1 0 2 KLHL20 chr1:173735428 5'GT 173735428 Upstream 51bp
chr12 7473395 7473395 1 + T G BRCA 7473393 + 7473373 7473413 41 GGATGCTCGTGCAAAAAGACCTTAAGAGGTACTTGGGCAGA GGATGCTCGTGCAAAAAGACCTGAAGAGGTACTTGGGCAGA < 41bp 0.457930414122807 0.778608172783782 0.28754312 0.46544313 prediction 0.557216345567565 Functional Gain - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7473393 chr12:7473395 synonymous SNV . 0 23 hm5C_associated_SNPs_103942 0 0 0 0 2 ACSM4 chr12:7473321 3'AG 7473321 Downstream 75bp
chr12 7473395 7473395 1 + T G BRCA 7473393 + 7473373 7473413 41 GGATGCTCGTGCAAAAAGACCTTAAGAGGTACTTGGGCAGA GGATGCTCGTGCAAAAAGACCTGAAGAGGTACTTGGGCAGA < 41bp 0.457930414122807 0.778608172783782 0.28754312 0.46544313 prediction 0.557216345567565 Functional Gain - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7473393 chr12:7473395 synonymous SNV . 0 23 hm5C_associated_SNPs_103942 0 0 0 0 2 ACSM4 chr12:7473400 5'GT 7473400 Upstream 6bp
chr1 1420466 1420466 1 + T A COAD 1420462 + 1420442 1420482 41 ATGCGACAGCCGTCACTGGCCGCTTCATCGAGGCTCGGCTG ATGCGACAGCCGTCACTGGCCGCTACATCGAGGCTCGGCTG < 41bp 0.461980605683744 0.778602202652996 0.01788041 0.10414782 prediction 0.557204405305992 Functional Gain - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1420462 chr1:1420466 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_103943 0 0 1 0 2 ATAD3B chr1:1420396 3'AG 1420396 Downstream 71bp
chr1 1420466 1420466 1 + T A COAD 1420462 + 1420442 1420482 41 ATGCGACAGCCGTCACTGGCCGCTTCATCGAGGCTCGGCTG ATGCGACAGCCGTCACTGGCCGCTACATCGAGGCTCGGCTG < 41bp 0.461980605683744 0.778602202652996 0.01788041 0.10414782 prediction 0.557204405305992 Functional Gain - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1420462 chr1:1420466 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_103943 0 0 1 0 2 ATAD3B chr1:1420551 5'GT 1420551 Upstream 86bp
chr9 35733461 35733461 1 + T G UCEC 35733459 + 35733439 35733479 41 AGAAGGAGGGGCTTATTCTGCCTGAGACACTTCCTCTCACT AGAAGGAGGGGCTTATTCTGCCGGAGACACTTCCTCTCACT < 41bp 0.440896610616481 0.778599774113998 0.3379901 0.8898256 prediction 0.557199548227997 Functional Gain - CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733459 chr9:35733461 synonymous SNV . 0 23 hm5C_associated_SNPs_103944 0 0 1 0 2 CREB3 chr9:35733393 3'AG 35733393 Downstream 69bp
chr9 35733461 35733461 1 + T G UCEC 35733459 + 35733439 35733479 41 AGAAGGAGGGGCTTATTCTGCCTGAGACACTTCCTCTCACT AGAAGGAGGGGCTTATTCTGCCGGAGACACTTCCTCTCACT < 41bp 0.440896610616481 0.778599774113998 0.3379901 0.8898256 prediction 0.557199548227997 Functional Gain - CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733459 chr9:35733461 synonymous SNV . 0 23 hm5C_associated_SNPs_103944 0 0 1 0 2 CREB3 chr9:35733482 5'GT 35733482 Upstream 22bp
chr4 71255436 71255436 1 + T A LUSC 71255432 + 71255412 71255452 41 ATATCCACCTGGACCGCTGGCTCCTCCTCAACCTTTTGGCC ATATCCACCTGGACCGCTGGCTCCACCTCAACCTTTTGGCC < 41bp 0.454126233535474 0.778575401810399 0.029642195 0.1962094 prediction 0.557150803620798 Functional Gain - SMR3B ENSG00000171201 CDS Human protein_coding chr4:71255432 chr4:71255436 synonymous SNV . 0 25 hm5C_associated_SNPs_103947 0 0 0 0 1 SMR3B chr4:71255380 3'AG 71255380 Downstream 57bp
chr8 9605665 9605665 1 + T A LUAD 9605661 + 9605641 9605681 41 GCTGTGCGCCCTCCTCCTAGCGCATGGTGCAGACCCCACCA GCTGTGCGCCCTCCTCCTAGCGCAAGGTGCAGACCCCACCA < 41bp 0.566392740153349 0.844962031899553 0.81657326 0.9122611 prediction 0.557138583492408 Functional Gain - TNKS ENSG00000173273 CDS Human protein_coding chr8:9605661 chr8:9605665 nonsynonymous SNV 0.814 3 25 hm5C_associated_SNPs_103948 0 0 1 0 1 TNKS chr8:9605722 5'GT 9605722 Upstream 58bp
chr12 107914391 107914391 1 + C A UCEC 107914387 + 107914367 107914407 41 CGAGCAGTCTTTGCTGGCCACGCGCGTAGGCAGCATCGCCG CGAGCAGTCTTTGCTGGCCACGCGAGTAGGCAGCATCGCCG < 41bp 0.371399881771087 0.778563534947952 0.27743536 0.6417136 prediction 0.557127069895905 Functional Gain - BTBD11 ENSG00000151136 CDS Human protein_coding chr12:107914387 chr12:107914391 synonymous SNV . 0 25 hm5C_associated_SNPs_103950 0 0 0 0 1 BTBD11 chr12:107914413 5'GT 107914413 Upstream 23bp
chr20 33762679 33762679 1 + C A LUSC 33762675 + 33762655 33762695 41 AGGAGCCCGAGAGCTGGGCGCGCACGCAGAGTGGCCTGCAG AGGAGCCCGAGAGCTGGGCGCGCAAGCAGAGTGGCCTGCAG < 41bp 0.630597152564819 0.909138381735156 0.277615 0.698735 prediction 0.557082458340674 Functional Gain - PROCR ENSG00000101000 CDS Human protein_coding chr20:33762675 chr20:33762679 nonsynonymous SNV 0.011 1 25 hm5C_associated_SNPs_103951 0 0 0 0 1 PROCR chr20:33762756 5'GT 33762756 Upstream 78bp
chr12 125900095 125900095 1 + T A rs3809261 125900091 + 125900071 125900111 41 CCACAGAATTAAGGCGGCAGCAGGTGTGAAGATAACGGCAG CCACAGAATTAAGGCGGCAGCAGGAGTGAAGATAACGGCAG < 41bp 0.490862188503652 0.778521481085012 0.59777045 0.83471024 prediction 0.557042962170023 Functional Gain - TMEM132B ENSG00000139364 CDS Human protein_coding chr12:125900091 chr12:125900095 synonymous SNV . 0 25 hm5C_associated_SNPs_103954 0 0 0 0 1 TMEM132B chr12:125900077 3'AG 125900077 Downstream 19bp
chr16 69373979 69373979 1 + C A GBM 69373975 + 69373955 69373995 41 TACTGTTTCCGTCTGCACAACGACCGGGTGTACTATGTGAG TACTGTTTCCGTCTGCACAACGACAGGGTGTACTATGTGAG < 41bp 0.374516427325966 0.778501836953121 0.047451317 0.066135764 prediction 0.557003673906242 Functional Gain - NIP7 ENSG00000132603 CDS Human protein_coding chr16:69373975 chr16:69373979 synonymous SNV . 0 25 hm5C_associated_SNPs_103957 0 0 1 0 2 NIP7 chr16:69373909 3'AG 69373909 Downstream 71bp
chr16 69373979 69373979 1 + C A GBM 69373975 + 69373955 69373995 41 TACTGTTTCCGTCTGCACAACGACCGGGTGTACTATGTGAG TACTGTTTCCGTCTGCACAACGACAGGGTGTACTATGTGAG < 41bp 0.374516427325966 0.778501836953121 0.047451317 0.066135764 prediction 0.557003673906242 Functional Gain - NIP7 ENSG00000132603 CDS Human protein_coding chr16:69373975 chr16:69373979 synonymous SNV . 0 25 hm5C_associated_SNPs_103957 0 0 1 0 2 NIP7 chr16:69373995 5'GT 69373995 Upstream 17bp
chr1 1421933 1421933 1 + C A PCPG 1421929 + 1421909 1421949 41 ACTCTTCTTGTCCAGAAACTCGCCCTGCACTCAGGCATGGA ACTCTTCTTGTCCAGAAACTCGCCATGCACTCAGGCATGGA < 41bp 0.353272258116049 0.778499985298666 0.20743397 0.3457865 prediction 0.556999970597332 Functional Gain - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1421929 chr1:1421933 nonsynonymous SNV 0.028 1 25 hm5C_associated_SNPs_103958 0 0 0 0 1 ATAD3B chr1:1421924 3'AG 1421924 Downstream 10bp
chr4 79793787 79793787 1 + C A UCEC 79793783 + 79793763 79793803 41 TTCAGATGCCGCAGTATCAGCAGGCTTTCTTTCAACAGCAG TTCAGATGCCGCAGTATCAGCAGGATTTCTTTCAACAGCAG < 41bp 0.383484133954571 0.778482245238206 0.8260691 0.81349653 prediction 0.556964490476412 Functional Gain - BMP2K ENSG00000138756 CDS Human protein_coding chr4:79793783 chr4:79793787 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_103959 0 0 1 0 1 BMP2K chr4:79793768 3'AG 79793768 Downstream 20bp
chr8 11222493 11222493 1 + C A rs183292602 11222489 + 11222469 11222509 41 ACAACGTGGATGCCGTTCGCCAGGCCATAGGTTCGTACCCG ACAACGTGGATGCCGTTCGCCAGGACATAGGTTCGTACCCG < 41bp 0.612569099771994 0.891039055302283 0.7962872 0.7359265 prediction 0.556939911060579 Functional Gain - TDH ENSG00000154316 ncRNA_exonic Human transcribed_unitary_pseudogene chr8:11222489 chr8:11222493 . . 0 25 hm5C_associated_SNPs_103962 0 0 0 0 1 TDH chr8:11222498 5'GT 11222498 Upstream 6bp
chr19 46185005 46185005 1 + C G HNSC 46185004 + 46184984 46185024 41 CAGGTGCAGTCGGAGATCCGCCGTGGCTGGCACCACTGCCG CAGGTGCAGTCGGAGATCCGCGGTGGCTGGCACCACTGCCG < 41bp 0.475356845866229 0.778448059070036 0.74314857 0.8976917 prediction 0.556896118140071 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46185004 chr19:46185005 nonsynonymous SNV 0.929 1 22 hm5C_associated_SNPs_103967 0 0 1 0 1 GIPR chr19:46184987 3'AG 46184987 Downstream 19bp
chr15 65218320 65218320 1 + C G rs74528237 65218316 + 65218296 65218336 41 AAAAAGGCCATGTGCCTGTGCTGGCGTTCATAATGGAGGAC AAAAAGGCCATGTGCCTGTGCTGGGGTTCATAATGGAGGAC < 41bp 0.495302293409329 0.778435583229876 0.3519029 0.6433914 prediction 0.556871166459753 Functional Gain - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65218316 chr15:65218320 nonsynonymous SNV 0.951 1 25 hm5C_associated_SNPs_103968 0 0 0 1 2 ANKDD1A chr15:65218265 3'AG 65218265 Downstream 56bp
chr15 65218320 65218320 1 + C G rs74528237 65218316 + 65218296 65218336 41 AAAAAGGCCATGTGCCTGTGCTGGCGTTCATAATGGAGGAC AAAAAGGCCATGTGCCTGTGCTGGGGTTCATAATGGAGGAC < 41bp 0.495302293409329 0.778435583229876 0.3519029 0.6433914 prediction 0.556871166459753 Functional Gain - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65218316 chr15:65218320 nonsynonymous SNV 0.951 1 25 hm5C_associated_SNPs_103968 0 0 0 1 2 ANKDD1A chr15:65218369 5'GT 65218369 Upstream 50bp
chrX 111697745 111697745 1 + T G LUAD 111697743 + 111697723 111697763 41 TGCAGACCATTGGCCTTTTCCATGAAGAAGAGGCAACATTG TGCAGACCATTGGCCTTTTCCAGGAAGAAGAGGCAACATTG < 41bp 0.51410938016694 0.792525158356698 0.16339001 0.899244 prediction 0.556831556379516 Functional Gain - RTL4 ENSG00000187823 UTR5 Human protein_coding chrX:111697743 chrX:111697745 . . 0 23 hm5C_associated_SNPs_103970 0 0 0 0 1 RTL4 chrX:111697728 3'AG 111697728 Downstream 18bp
chr1 17682562 17682562 1 + C G BLCA 17682558 + 17682538 17682578 41 GGCCCCTGTGAAGCTCTATTCTGACTGGCTGTCCGTGGGCC GGCCCCTGTGAAGCTCTATTCTGAGTGGCTGTCCGTGGGCC < 41bp 0.491923940996753 0.778389936862882 0.3522256 0.8475069 prediction 0.556779873725765 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17682558 chr1:17682562 nonsynonymous SNV 0.497 3 25 hm5C_associated_SNPs_103972 0 0 0 0 2 PADI4 chr1:17682478 3'AG 17682478 Downstream 85bp
chr1 17682562 17682562 1 + C G BLCA 17682558 + 17682538 17682578 41 GGCCCCTGTGAAGCTCTATTCTGACTGGCTGTCCGTGGGCC GGCCCCTGTGAAGCTCTATTCTGAGTGGCTGTCCGTGGGCC < 41bp 0.491923940996753 0.778389936862882 0.3522256 0.8475069 prediction 0.556779873725765 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17682558 chr1:17682562 nonsynonymous SNV 0.497 3 25 hm5C_associated_SNPs_103972 0 0 0 0 2 PADI4 chr1:17682622 5'GT 17682622 Upstream 61bp
chr16 15110036 15110036 1 + T G STAD 15110033 + 15110013 15110053 41 AGATTGGGAGATTGAAAGAACTCTGTGAGCAGTATGGCATA AGATTGGGAGATTGAAAGAACTCGGTGAGCAGTATGGCATA < 41bp 0.397122150494891 0.77838473939517 0.15434128 0.16155595 prediction 0.556769478790341 Functional Gain - PDXDC1 ENSG00000179889 CDS Human protein_coding chr16:15110033 chr16:15110036 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_103973 0 0 0 0 2 PDXDC1 chr16:15109986 3'AG 15109986 Downstream 51bp
chr16 15110036 15110036 1 + T G STAD 15110033 + 15110013 15110053 41 AGATTGGGAGATTGAAAGAACTCTGTGAGCAGTATGGCATA AGATTGGGAGATTGAAAGAACTCGGTGAGCAGTATGGCATA < 41bp 0.397122150494891 0.77838473939517 0.15434128 0.16155595 prediction 0.556769478790341 Functional Gain - PDXDC1 ENSG00000179889 CDS Human protein_coding chr16:15110033 chr16:15110036 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_103973 0 0 0 0 2 PDXDC1 chr16:15110070 5'GT 15110070 Upstream 35bp
chr1 246729892 246729892 1 + C A rs193037102 246729888 + 246729868 246729908 41 CAAGCTCCGTGACAGCACGTCGGCCGCCATGTCGCCGAGTG CAAGCTCCGTGACAGCACGTCGGCAGCCATGTCGCCGAGTG < 41bp 0.48381076138092 0.778372015623 0.22516552 0.27715972 prediction 0.556744031246 Functional Gain - CNST ENSG00000162852 UTR5 Human protein_coding chr1:246729888 chr1:246729892 . . 0 25 hm5C_associated_SNPs_103974 0 0 1 0 1 CNST chr1:246729965 5'GT 246729965 Upstream 74bp
chr17 45913745 45913745 1 + C A LUSC 45913741 + 45913721 45913761 41 CCACTTCTCCTGGACCTGGACGGGCAGCCTGTGGTGGAGCG CCACTTCTCCTGGACCTGGACGGGAAGCCTGTGGTGGAGCG < 41bp 0.631297880537447 0.909647984298749 0.40774086 0.7360307 prediction 0.556700207522605 Functional Gain - LRRC46 ENSG00000141294 CDS Human protein_coding chr17:45913741 chr17:45913745 nonsynonymous SNV 0.029 0 25 hm5C_associated_SNPs_103977 0 0 0 0 2 LRRC46 chr17:45913699 3'AG 45913699 Downstream 47bp
chr17 45913745 45913745 1 + C A LUSC 45913741 + 45913721 45913761 41 CCACTTCTCCTGGACCTGGACGGGCAGCCTGTGGTGGAGCG CCACTTCTCCTGGACCTGGACGGGAAGCCTGTGGTGGAGCG < 41bp 0.631297880537447 0.909647984298749 0.40774086 0.7360307 prediction 0.556700207522605 Functional Gain - LRRC46 ENSG00000141294 CDS Human protein_coding chr17:45913741 chr17:45913745 nonsynonymous SNV 0.029 0 25 hm5C_associated_SNPs_103977 0 0 0 0 2 LRRC46 chr17:45913841 5'GT 45913841 Upstream 97bp
chr19 1220443 1220443 1 + C G ACC 1220442 + 1220422 1220462 41 TTGTGCACAAGGACATCAAGCCGGGGAACCTGCTGCTCACC TTGTGCACAAGGACATCAAGCGGGGGAACCTGCTGCTCACC < 41bp 0.551788508858248 0.830133080168925 0.9471406 0.95618564 prediction 0.556689142621355 Functional Gain - STK11 ENSG00000118046 CDS Human protein_coding chr19:1220442 chr19:1220443 nonsynonymous SNV 0.860 4 22 hm5C_associated_SNPs_103979 0 0 1 0 2 STK11 chr19:1220372 3'AG 1220372 Downstream 72bp
chr19 1220443 1220443 1 + C G ACC 1220442 + 1220422 1220462 41 TTGTGCACAAGGACATCAAGCCGGGGAACCTGCTGCTCACC TTGTGCACAAGGACATCAAGCGGGGGAACCTGCTGCTCACC < 41bp 0.551788508858248 0.830133080168925 0.9471406 0.95618564 prediction 0.556689142621355 Functional Gain - STK11 ENSG00000118046 CDS Human protein_coding chr19:1220442 chr19:1220443 nonsynonymous SNV 0.860 4 22 hm5C_associated_SNPs_103979 0 0 1 0 2 STK11 chr19:1220504 5'GT 1220504 Upstream 62bp
chr17 25628924 25628924 1 + T G SKCM 25628922 + 25628902 25628942 41 TCCAGATGGTTCATACTTTGCTTGGTCACAAGGACATCGCA TCCAGATGGTTCATACTTTGCTGGGTCACAAGGACATCGCA < 41bp 0.569237902438567 0.847561634030896 0.029960304 0.35461664 prediction 0.556647463184659 Functional Gain - WSB1 ENSG00000109046 CDS Human protein_coding chr17:25628922 chr17:25628924 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_103981 0 0 1 0 2 WSB1 chr17:25628907 3'AG 25628907 Downstream 18bp
chr17 25628924 25628924 1 + T G SKCM 25628922 + 25628902 25628942 41 TCCAGATGGTTCATACTTTGCTTGGTCACAAGGACATCGCA TCCAGATGGTTCATACTTTGCTGGGTCACAAGGACATCGCA < 41bp 0.569237902438567 0.847561634030896 0.029960304 0.35461664 prediction 0.556647463184659 Functional Gain - WSB1 ENSG00000109046 CDS Human protein_coding chr17:25628922 chr17:25628924 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_103981 0 0 1 0 2 WSB1 chr17:25628982 5'GT 25628982 Upstream 59bp
chr1 9711820 9711820 1 + C G rs369737325 9711819 + 9711799 9711839 41 AGCGCAGTCGCTCCGAGCGGCCGCGAGCAGAGCCGCCCAGC AGCGCAGTCGCTCCGAGCGGCGGCGAGCAGAGCCGCCCAGC < 41bp 0.518207425050488 0.796516223633064 0.6837038 0.90434283 prediction 0.556617597165151 Functional Gain - PIK3CD ENSG00000171608 UTR5 Human protein_coding chr1:9711819 chr1:9711820 . . 0 22 hm5C_associated_SNPs_103983 0 0 1 0 1 PIK3CD chr1:9711860 5'GT 9711860 Upstream 41bp
chr17 3558559 3558559 1 + T G UCEC 3558557 + 3558537 3558577 41 ATCCGCAGCAGCGCCATTAGCATCATAAACCAGGTGATTGG ATCCGCAGCAGCGCCATTAGCAGCATAAACCAGGTGATTGG < 41bp 0.593161252349369 0.871431474238994 0.0781306 0.5353913 prediction 0.55654044377925 Functional Gain - CTNS ENSG00000040531 CDS Human protein_coding chr17:3558557 chr17:3558559 nonsynonymous SNV 0.772 2 23 hm5C_associated_SNPs_103988 0 0 1 0 2 CTNS chr17:3558515 3'AG 3558515 Downstream 45bp
chr17 3558559 3558559 1 + T G UCEC 3558557 + 3558537 3558577 41 ATCCGCAGCAGCGCCATTAGCATCATAAACCAGGTGATTGG ATCCGCAGCAGCGCCATTAGCAGCATAAACCAGGTGATTGG < 41bp 0.593161252349369 0.871431474238994 0.0781306 0.5353913 prediction 0.55654044377925 Functional Gain - CTNS ENSG00000040531 CDS Human protein_coding chr17:3558557 chr17:3558559 nonsynonymous SNV 0.772 2 23 hm5C_associated_SNPs_103988 0 0 1 0 2 CTNS chr17:3558646 5'GT 3558646 Upstream 88bp
chr9 99252342 99252342 1 + C G rs12347119 99252341 + 99252321 99252361 41 AAGAGCCCTGTTTCCCAGCACCGCGGAGCTGCACTGCACAC AAGAGCCCTGTTTCCCAGCACGGCGGAGCTGCACTGCACAC < 41bp 0.54697435574119 0.825211762358307 0.38425854 0.7793336 prediction 0.556474813234235 Functional Gain - HABP4 ENSG00000130956 UTR3 Human protein_coding chr9:99252341 chr9:99252342 . . 0 22 hm5C_associated_SNPs_103991 0 0 1 0 1 HABP4 chr9:99252264 3'AG 99252264 Downstream 79bp
chr7 150773473 150773473 1 + C G rs569148643 150773469 + 150773449 150773489 41 GTGTAGCCGCCACCGAGGGACAGCCGAGGGACCGATGGACG GTGTAGCCGCCACCGAGGGACAGCGGAGGGACCGATGGACG < 41bp 0.498243620896697 0.778226230678828 0.26975268 0.5062968 prediction 0.556452461357656 Functional Gain - SLC4A2 ENSG00000244151 ncRNA_exonic Human protein_coding chr7:150773469 chr7:150773473 . . 0 25 hm5C_associated_SNPs_103994 0 0 1 0 1 SLC4A2 chr7:150773374 3'AG 150773374 Downstream 100bp
chr9 101597549 101597549 1 + T A rs201140510 101597545 + 101597525 101597565 41 TTTTAGGTCTCCAACAATGGCTGGTGGGCTGTTTGCTGTGA TTTTAGGTCTCCAACAATGGCTGGAGGGCTGTTTGCTGTGA < 41bp 0.566900218031705 0.84512617284102 0.047884613 0.14220113 prediction 0.556451909618631 Functional Gain - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101597545 chr9:101597549 synonymous SNV . 0 25 hm5C_associated_SNPs_103995 0 0 1 0 1 GALNT12 chr9:101597531 3'AG 101597531 Downstream 19bp
chr7 89790581 89790581 1 + C G CESC 89790580 + 89790560 89790600 41 GCAATTTATAGTCTGTCTTACCCAATGAGGCGATCCTACAG GCAATTTATAGTCTGTCTTACGCAATGAGGCGATCCTACAG < 41bp 0.52722195631879 0.805445352810074 0.39462015 0.1766819 prediction 0.556446792982568 Functional Gain - STEAP1 ENSG00000164647 CDS Human protein_coding chr7:89790580 chr7:89790581 nonsynonymous SNV 0.764 3 22 hm5C_associated_SNPs_103996 0 0 0 0 1 STEAP1 chr7:89790631 5'GT 89790631 Upstream 51bp
chr10 124096076 124096076 1 + C G rs143717019 124096072 + 124096052 124096092 41 AGCACAACCACGTCAGCCTGCGAGCGGCACGCCTGGTGAAG AGCACAACCACGTCAGCCTGCGAGGGGCACGCCTGGTGAAG < 41bp 0.516485711534557 0.794645309429125 0.6263283 0.89482796 prediction 0.556319195789136 Functional Gain - BTBD16 ENSG00000138152 CDS Human protein_coding chr10:124096072 chr10:124096076 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_103999 0 0 0 0 1 BTBD16 chr10:124096009 3'AG 124096009 Downstream 68bp
chr19 17641670 17641670 1 + C A STAD 17641666 + 17641646 17641686 41 AGAGCTGGGCCCTCAGGAGCCGACCGGAAGCCAGTTGCTAC AGAGCTGGGCCCTCAGGAGCCGACAGGAAGCCAGTTGCTAC < 41bp 0.400563855473854 0.778151049760444 0.24854025 0.1666973 prediction 0.556302099520887 Functional Gain - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17641666 chr19:17641670 synonymous SNV . 0 25 hm5C_associated_SNPs_104001 0 0 0 0 1 FAM129C chr19:17641694 5'GT 17641694 Upstream 25bp
chr5 640669 640669 1 + C G rs138955347 640668 + 640648 640688 41 GAGCAGCAGCAGCAGCACGCCCGGGAGATGAGCGAGGTGAC GAGCAGCAGCAGCAGCACGCCGGGGAGATGAGCGAGGTGAC < 41bp 0.524627962922791 0.80276733909735 0.40422603 0.8915684 prediction 0.556278752349117 Functional Gain - CEP72 ENSG00000112877 CDS Human protein_coding chr5:640668 chr5:640669 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_104002 0 0 1 0 1 CEP72 chr5:640719 5'GT 640719 Upstream 51bp
chr11 62010815 62010815 1 + T G UCEC 62010813 + 62010793 62010833 41 GAGCTGTTAGACTTCTTCTTCATTAGTGAACCTCTGTTCAA GAGCTGTTAGACTTCTTCTTCAGTAGTGAACCTCTGTTCAA < 41bp 0.453273815829044 0.778115047688352 0.18771785 0.37079144 prediction 0.556230095376704 Functional Gain - SCGB1D2 ENSG00000124935 CDS Human protein_coding chr11:62010813 chr11:62010815 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_104005 0 0 0 0 1 SCGB1D2 chr11:62010761 3'AG 62010761 Downstream 55bp
chr11 63671476 63671476 1 + C G KIRP 63671475 + 63671455 63671495 41 TAGCCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTG TAGCCTAACCATGCCAGGGTCGCGGGCCTCCACGGCTTCTG < 41bp 0.468346142939993 0.778110721240551 0.4825989 0.89240444 prediction 0.556221442481102 Functional Gain - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63671475 chr11:63671476 synonymous SNV . 0 22 hm5C_associated_SNPs_104006 0 0 1 0 1 MARK2 chr11:63671458 3'AG 63671458 Downstream 19bp
chr1 1244599 1244599 1 + C G rs557118889 1244598 + 1244578 1244618 41 GCTCAGGCCGGCCGCCCTTCCCGCCCGAGGTCCTGGCCGAG GCTCAGGCCGGCCGCCCTTCCGGCCCGAGGTCCTGGCCGAG < 41bp 0.503479635092485 0.781588410573438 0.16265848 0.34504056 prediction 0.556217550961908 Functional Gain - PUSL1 ENSG00000169972 CDS Human protein_coding chr1:1244598 chr1:1244599 nonsynonymous SNV 0.010 0 22 hm5C_associated_SNPs_104008 0 0 1 0 1 PUSL1 chr1:1244653 5'GT 1244653 Upstream 55bp
chr9 82323674 82323674 1 + T A UCEC 82323670 + 82323650 82323690 41 CGCAGCTGCTGCCGCCGCCGCTGCTGCTGCTGCCTATGGGA CGCAGCTGCTGCCGCCGCCGCTGCAGCTGCTGCCTATGGGA < 41bp 0.441790470910655 0.778098090502384 0.24376553 0.27519047 prediction 0.556196181004769 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82323670 chr9:82323674 synonymous SNV . 0 25 hm5C_associated_SNPs_104009 0 0 0 0 1 TLE4 chr9:82323701 5'GT 82323701 Upstream 28bp
chr9 110081111 110081111 1 + T C UCEC 110081109 + 110081089 110081129 41 CGAGAGCAAGTAATTGCAGCCCTGAGAGCCAGTTTCAACAA CGAGAGCAAGTAATTGCAGCCCCGAGAGCCAGTTTCAACAA < 41bp 0.49701786217255 0.778091644306293 0.02123189 0.08199391 prediction 0.556183288612586 Functional Gain - RAD23B ENSG00000119318 CDS Human protein_coding chr9:110081109 chr9:110081111 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_104010 0 0 1 0 2 RAD23B chr9:110081033 3'AG 110081033 Downstream 79bp
chr9 110081111 110081111 1 + T C UCEC 110081109 + 110081089 110081129 41 CGAGAGCAAGTAATTGCAGCCCTGAGAGCCAGTTTCAACAA CGAGAGCAAGTAATTGCAGCCCCGAGAGCCAGTTTCAACAA < 41bp 0.49701786217255 0.778091644306293 0.02123189 0.08199391 prediction 0.556183288612586 Functional Gain - RAD23B ENSG00000119318 CDS Human protein_coding chr9:110081109 chr9:110081111 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_104010 0 0 1 0 2 RAD23B chr9:110081160 5'GT 110081160 Upstream 50bp
chr2 24236244 24236244 1 + C A UCEC 24236240 + 24236220 24236260 41 CCAGATAGCCTCCAGCGCCACAGCCTTTTACCTGCAGCTTT CCAGATAGCCTCCAGCGCCACAGCATTTTACCTGCAGCTTT < 41bp 0.371322196129653 0.778085113437463 0.14569336 0.24302089 prediction 0.556170226874926 Functional Gain - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24236240 chr2:24236244 synonymous SNV . 0 25 hm5C_associated_SNPs_104011 0 0 0 4 2 MFSD2B chr2:24236155 3'AG 24236155 Downstream 90bp
chr2 24236244 24236244 1 + C A UCEC 24236240 + 24236220 24236260 41 CCAGATAGCCTCCAGCGCCACAGCCTTTTACCTGCAGCTTT CCAGATAGCCTCCAGCGCCACAGCATTTTACCTGCAGCTTT < 41bp 0.371322196129653 0.778085113437463 0.14569336 0.24302089 prediction 0.556170226874926 Functional Gain - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24236240 chr2:24236244 synonymous SNV . 0 25 hm5C_associated_SNPs_104011 0 0 0 4 2 MFSD2B chr2:24236280 5'GT 24236280 Upstream 37bp
chr1 243480092 243480092 1 + T G LGG 243480089 + 243480069 243480109 41 CTTGATGTCTGCACTAGTTTCCGTAAGGAGCAGCTTGGCAG CTTGATGTCTGCACTAGTTTCCGGAAGGAGCAGCTTGGCAG < 41bp 0.408325714119124 0.778035158820472 0.42273957 0.89764154 prediction 0.556070317640943 Functional Gain - SDCCAG8 ENSG00000054282 CDS Human protein_coding chr1:243480089 chr1:243480092 nonsynonymous SNV 0.364 2 24 hm5C_associated_SNPs_104015 0 0 1 0 1 SDCCAG8 chr1:243480057 3'AG 243480057 Downstream 36bp
chr7 150105512 150105512 1 + C A rs546463327 150105508 + 150105488 150105528 41 CCTCCCTCGGGACCCTCTGGCTGGCTGCGCACAGCTGCTTC CCTCCCTCGGGACCCTCTGGCTGGATGCGCACAGCTGCTTC < 41bp 0.59474554664083 0.872769967280291 0.16261947 0.5289879 prediction 0.556048841278922 Functional Gain - LOC728743 ENSG00000196456;ENSG00000242258 intergenic Human other chr7:150105508 chr7:150105512 . . 0 25 hm5C_associated_SNPs_104018 0 0 0 0 1 LOC728743 chr7:150105576 5'GT 150105576 Upstream 65bp
chr19 13930269 13930269 1 + C G LUSC 13930268 + 13930248 13930288 41 ACCGCACTGCTGCCTCATGACCCGGACCTGGCCTATCGCCT ACCGCACTGCTGCCTCATGACGCGGACCTGGCCTATCGCCT < 41bp 0.466153970430955 0.778010594574357 0.18192944 0.65631485 prediction 0.556021189148715 Functional Gain - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13930268 chr19:13930269 nonsynonymous SNV 0.958 0 22 hm5C_associated_SNPs_104019 0 0 0 0 2 ZSWIM4 chr19:13930171 3'AG 13930171 Downstream 99bp
chr19 13930269 13930269 1 + C G LUSC 13930268 + 13930248 13930288 41 ACCGCACTGCTGCCTCATGACCCGGACCTGGCCTATCGCCT ACCGCACTGCTGCCTCATGACGCGGACCTGGCCTATCGCCT < 41bp 0.466153970430955 0.778010594574357 0.18192944 0.65631485 prediction 0.556021189148715 Functional Gain - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13930268 chr19:13930269 nonsynonymous SNV 0.958 0 22 hm5C_associated_SNPs_104019 0 0 0 0 2 ZSWIM4 chr19:13930306 5'GT 13930306 Upstream 38bp
chr1 17706441 17706441 1 + C G SKCM 17706440 + 17706420 17706460 41 TCTCTAGAGGTAGACATCTACCGCAATGGGCAAGTTGAGAT TCTCTAGAGGTAGACATCTACGGCAATGGGCAAGTTGAGAT < 41bp 0.519127226650633 0.797110979958034 0.41967237 0.86834514 prediction 0.555967506614801 Functional Gain - PADI6 ENSG00000256049 ncRNA_exonic Human other chr1:17706440 chr1:17706441 . 0.388 2 22 hm5C_associated_SNPs_104020 0 0 0 0 2 PADI6 chr1:17706415 3'AG 17706415 Downstream 27bp
chr1 17706441 17706441 1 + C G SKCM 17706440 + 17706420 17706460 41 TCTCTAGAGGTAGACATCTACCGCAATGGGCAAGTTGAGAT TCTCTAGAGGTAGACATCTACGGCAATGGGCAAGTTGAGAT < 41bp 0.519127226650633 0.797110979958034 0.41967237 0.86834514 prediction 0.555967506614801 Functional Gain - PADI6 ENSG00000256049 ncRNA_exonic Human other chr1:17706440 chr1:17706441 . 0.388 2 22 hm5C_associated_SNPs_104020 0 0 0 0 2 PADI6 chr1:17706482 5'GT 17706482 Upstream 42bp
chr1 161138933 161138933 1 + C G rs12735723 161138929 + 161138909 161138949 41 GGGTCAGTGTTCTCAGAGGCCAGCCGGTCTGTGGGCTCAGC GGGTCAGTGTTCTCAGAGGCCAGCGGGTCTGTGGGCTCAGC < 41bp 0.50890924871806 0.786887482871308 0.26623887 0.5124419 prediction 0.555956468306497 Functional Gain - PPOX ENSG00000143224 CDS Human protein_coding chr1:161138929 chr1:161138933 nonsynonymous SNV 0.767 3 25 hm5C_associated_SNPs_104022 1 0 1 0 1 PPOX chr1:161138973 5'GT 161138973 Upstream 41bp
chr17 9480081 9480081 1 + T G LUSC 9480078 + 9480058 9480098 41 CTTGACGCCGTGATCGGCTTCAATGGTGAGGCCTCCAGCAT CTTGACGCCGTGATCGGCTTCAAGGGTGAGGCCTCCAGCAT < 41bp 0.57899091528567 0.856957833098372 0.10578978 0.8839324 prediction 0.555933835625406 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9480078 chr17:9480081 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_104024 0 0 0 0 1 CFAP52 chr17:9480082 5'GT 9480082 Upstream 2bp
chr12 66696538 66696538 1 + T G STAD 66696536 + 66696516 66696556 41 GAGGAGCTCTGCAGTGGGGGCGTAAAGGCTGGCAGCCTCCC GAGGAGCTCTGCAGTGGGGGCGGAAAGGCTGGCAGCCTCCC < 41bp 0.588723156302368 0.866682710005345 0.8379899 0.8999784 prediction 0.555919107405955 Functional Gain - HELB ENSG00000127311 CDS Human protein_coding chr12:66696536 chr12:66696538 nonsynonymous SNV 0.006 0 23 hm5C_associated_SNPs_104025 0 0 1 0 1 HELB chr12:66696570 5'GT 66696570 Upstream 33bp
chr17 76235908 76235908 1 + C G BRCA 76235907 + 76235887 76235927 41 AGAGGGACCCACCCAGATCGCCTGGCGCCAGAGAGATGCCG AGAGGGACCCACCCAGATCGCGTGGCGCCAGAGAGATGCCG < 41bp 0.533874992997793 0.811833315466679 0.54982 0.87366503 prediction 0.555916644937773 Functional Gain - TMEM235 ENSG00000204278 CDS Human protein_coding chr17:76235907 chr17:76235908 synonymous SNV . 0 22 hm5C_associated_SNPs_104026 0 0 0 0 1 TMEM235 chr17:76235861 3'AG 76235861 Downstream 48bp
chr4 151153909 151153909 1 + T A LUSC 151153905 + 151153885 151153925 41 GATGGCAGTGCCATGGTGTACAACTTAGCCAATGCCCTCAG GATGGCAGTGCCATGGTGTACAACATAGCCAATGCCCTCAG < 41bp 0.455928833246755 0.777946919766977 0.14583483 0.25687003 prediction 0.555893839533954 Functional Gain - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151153905 chr4:151153909 nonsynonymous SNV 0.957 4 25 hm5C_associated_SNPs_104027 0 0 1 1 1 DCLK2 chr4:151153980 5'GT 151153980 Upstream 72bp
chr22 25016930 25016930 1 + C A HNSC 25016926 + 25016906 25016946 41 TGCTTCGGGAGGGGGAGAGACTGACCCTGCCGCAGCTGGCT TGCTTCGGGAGGGGGAGAGACTGAACCTGCCGCAGCTGGCT < 41bp 0.363368724385701 0.777940204508445 0.42059845 0.7922021 prediction 0.555880409016891 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25016926 chr22:25016930 nonsynonymous SNV 0.106 0 25 hm5C_associated_SNPs_104029 0 0 1 0 1 GGT1 chr22:25016880 3'AG 25016880 Downstream 51bp
chr11 3846320 3846320 1 + C A UCEC 3846316 + 3846296 3846336 41 TCATCTCCTTCTTCTCGGCGCTGGCTGTCTACTTTCGGCAC TCATCTCCTTCTTCTCGGCGCTGGATGTCTACTTTCGGCAC < 41bp 0.411066250886328 0.777933785196004 0.02125755 0.04070744 prediction 0.555867570392009 Functional Gain - PGAP2 ENSG00000148985 CDS Human protein_coding chr11:3846316 chr11:3846320 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_104030 0 0 1 1 2 PGAP2 chr11:3846250 3'AG 3846250 Downstream 71bp
chr11 3846320 3846320 1 + C A UCEC 3846316 + 3846296 3846336 41 TCATCTCCTTCTTCTCGGCGCTGGCTGTCTACTTTCGGCAC TCATCTCCTTCTTCTCGGCGCTGGATGTCTACTTTCGGCAC < 41bp 0.411066250886328 0.777933785196004 0.02125755 0.04070744 prediction 0.555867570392009 Functional Gain - PGAP2 ENSG00000148985 CDS Human protein_coding chr11:3846316 chr11:3846320 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_104030 0 0 1 1 2 PGAP2 chr11:3846358 5'GT 3846358 Upstream 39bp
chr19 58101420 58101420 1 + C G SKCM 58101419 + 58101399 58101439 41 GATGAAGAGACACCTTCTGACCAGAATGTTTCTGTAGGAGT GATGAAGAGACACCTTCTGACGAGAATGTTTCTGTAGGAGT < 41bp 0.534749346247046 0.812679901463728 0.021070272 0.2814605 prediction 0.555861110433365 Functional Gain - ZIK1 ENSG00000171649 CDS Human protein_coding chr19:58101419 chr19:58101420 nonsynonymous SNV 0.390 0 22 hm5C_associated_SNPs_104031 0 0 1 0 1 ZIK1 chr19:58101379 3'AG 58101379 Downstream 42bp
chr2 70131394 70131394 1 + T G UCEC 70131392 + 70131372 70131412 41 TCTTCTCATCATAGGCAGTACATGAATCGAAAAGGTGGATT TCTTCTCATCATAGGCAGTACAGGAATCGAAAAGGTGGATT < 41bp 0.524622070715335 0.802545015307662 0.23067045 0.191481 prediction 0.555845889184654 Functional Gain - SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70131392 chr2:70131394 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_104033 0 0 1 0 1 SNRNP27 chr2:70131386 3'AG 70131386 Downstream 9bp
chr16 1412532 1412532 1 + C A LUSC 1412528 + 1412508 1412548 41 CCTGGCCGATGAGCTGATCACCCCCCAGGTAAGCGTGCGCT CCTGGCCGATGAGCTGATCACCCCACAGGTAAGCGTGCGCT < 41bp 0.362153642943826 0.777910425902527 0.34962878 0.4102488 prediction 0.555820851805054 Functional Gain - GNPTG ENSG00000090581 CDS Human protein_coding chr16:1412528 chr16:1412532 synonymous SNV . 0 25 hm5C_associated_SNPs_104034 0 0 0 0 1 GNPTG chr16:1412535 5'GT 1412535 Upstream 4bp
chrX 135638632 135638632 1 + T A OV 135638628 + 135638608 135638648 41 AGCTCTTTCAGAGTTAGAGACACCTGGGAAATACTCACTTA AGCTCTTTCAGAGTTAGAGACACCAGGGAAATACTCACTTA < 41bp 0.542401298780704 0.820303020338922 0.16092485 0.19964114 prediction 0.555803443116434 Functional Gain - VGLL1 ENSG00000102243 CDS Human protein_coding chrX:135638628 chrX:135638632 synonymous SNV . 0 25 hm5C_associated_SNPs_104035 0 0 0 0 1 VGLL1 chrX:135638610 3'AG 135638610 Downstream 23bp
chr12 57921968 57921968 1 + C A LIHC 57921964 + 57921944 57921984 41 GCCAGAAGCCCCCTGTCTACCCCCCGAGAGCCCTGCCTCAG GCCAGAAGCCCCCTGTCTACCCCCAGAGAGCCCTGCCTCAG < 41bp 0.351439391710846 0.7778925426538 0.053349733 0.14591911 prediction 0.5557850853076 Functional Gain - MBD6 ENSG00000166987 CDS Human protein_coding chr12:57921964 chr12:57921968 synonymous SNV . 0 25 hm5C_associated_SNPs_104036 0 0 1 0 2 MBD6 chr12:57921927 3'AG 57921927 Downstream 42bp
chr12 57921968 57921968 1 + C A LIHC 57921964 + 57921944 57921984 41 GCCAGAAGCCCCCTGTCTACCCCCCGAGAGCCCTGCCTCAG GCCAGAAGCCCCCTGTCTACCCCCAGAGAGCCCTGCCTCAG < 41bp 0.351439391710846 0.7778925426538 0.053349733 0.14591911 prediction 0.5557850853076 Functional Gain - MBD6 ENSG00000166987 CDS Human protein_coding chr12:57921964 chr12:57921968 synonymous SNV . 0 25 hm5C_associated_SNPs_104036 0 0 1 0 2 MBD6 chr12:57921930 3'AG 57921930 Downstream 39bp
chr9 90500145 90500145 1 + C G rs150375971 90500144 + 90500124 90500164 41 TTTTTCCTCCTTCACCACAGCCGCATGGTCCCCTGGCCTCC TTTTTCCTCCTTCACCACAGCGGCATGGTCCCCTGGCCTCC < 41bp 0.466447834826823 0.777883390038426 0.21380085 0.65530217 prediction 0.555766780076852 Functional Gain - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90500144 chr9:90500145 nonsynonymous SNV 0.001 3 22 hm5C_associated_SNPs_104037 0 0 0 0 1 SPATA31E1 chr9:90500062 3'AG 90500062 Downstream 84bp
chr14 55817153 55817153 1 + C G rs560778845 55817152 + 55817132 55817172 41 GCTCCAGAAGAAAGAGCACCCCCCGGAAGTCAGCAGGGAAA GCTCCAGAAGAAAGAGCACCCGCCGGAAGTCAGCAGGGAAA < 41bp 0.526711134196103 0.804551785344606 0.04723364 0.07292679 prediction 0.555681302297006 Functional Gain - FBXO34 ENSG00000178974 CDS Human protein_coding chr14:55817152 chr14:55817153 synonymous SNV . 0 22 hm5C_associated_SNPs_104039 0 0 1 0 1 FBXO34 chr14:55817099 3'AG 55817099 Downstream 55bp
chr16 83983071 83983071 1 + C G rs4782865 83983070 + 83983050 83983090 41 GTGGGATGGGGAAGTGGAGACCGAGAGGCTGCTGCCGGGGA GTGGGATGGGGAAGTGGAGACGGAGAGGCTGCTGCCGGGGA < 41bp 0.528372215504631 0.806207890945501 0.5526336 0.8393943 prediction 0.555671350881739 Functional Gain - MLYCD;OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83983070 chr16:83983071 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_104040 0 0 0 0 1 MLYCD;OSGIN1 chr16:83983111 5'GT 83983111 Upstream 41bp
chr9 131768571 131768571 1 + C A OV 131768567 + 131768547 131768587 41 GCTTCTACCTGCTCATCTCTCAGGCGATGCGGTACCTTAGG GCTTCTACCTGCTCATCTCTCAGGAGATGCGGTACCTTAGG < 41bp 0.626262679327702 0.903998525902891 0.9493181 0.9538663 prediction 0.555471693150377 Functional Gain - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131768567 chr9:131768571 nonsynonymous SNV 0.572 4 25 hm5C_associated_SNPs_104045 0 0 1 0 2 NUP188 chr9:131768518 3'AG 131768518 Downstream 54bp
chr9 131768571 131768571 1 + C A OV 131768567 + 131768547 131768587 41 GCTTCTACCTGCTCATCTCTCAGGCGATGCGGTACCTTAGG GCTTCTACCTGCTCATCTCTCAGGAGATGCGGTACCTTAGG < 41bp 0.626262679327702 0.903998525902891 0.9493181 0.9538663 prediction 0.555471693150377 Functional Gain - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131768567 chr9:131768571 nonsynonymous SNV 0.572 4 25 hm5C_associated_SNPs_104045 0 0 1 0 2 NUP188 chr9:131768647 5'GT 131768647 Upstream 77bp
chr15 42695007 42695007 1 + C A BLCA 42695003 + 42694983 42695023 41 ATCTCTCAGATGCACGGGAACAAGCAGCACCTGCAGAAGGA ATCTCTCAGATGCACGGGAACAAGAAGCACCTGCAGAAGGA < 41bp 0.386069901912508 0.777704927336827 0.15735373 0.776228 prediction 0.555409854673655 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42695003 chr15:42695007 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_104049 0 0 1 0 1 CAPN3 chr15:42694992 3'AG 42694992 Downstream 16bp
chr5 76171269 76171269 1 + C A COAD 76171265 + 76171245 76171285 41 GGCAAGGAAAGGAAGAGATTCAAGCTCAGCAAGGGGGAACT GGCAAGGAAAGGAAGAGATTCAAGATCAGCAAGGGGGAACT < 41bp 0.632398704037915 0.910099687378609 0.38797253 0.591164 prediction 0.555401966681389 Functional Gain - S100Z ENSG00000171643 CDS Human protein_coding chr5:76171265 chr5:76171269 nonsynonymous SNV 0.987 4 25 hm5C_associated_SNPs_104051 0 0 0 0 1 S100Z chr5:76171325 5'GT 76171325 Upstream 57bp
chr4 130023911 130023911 1 + C G KIRC 130023910 + 130023890 130023930 41 CTCCAGCCCCACTTGGAGAACCAGGAAAACCTTTCAATGAA CTCCAGCCCCACTTGGAGAACGAGGAAAACCTTTCAATGAA < 41bp 0.519379833496552 0.797067062291664 0.9432763 0.9400753 prediction 0.555374457590223 Functional Gain - C4orf33 ENSG00000151470 CDS Human protein_coding chr4:130023910 chr4:130023911 nonsynonymous SNV 0.983 3 22 hm5C_associated_SNPs_104053 0 0 1 0 1 C4orf33 chr4:130023946 5'GT 130023946 Upstream 36bp
chr9 135962254 135962254 1 + C G UCEC 135962253 + 135962233 135962273 41 CAGCGGCTACCTGGAGATCACCAAGAAGATGGGCAGCAGCT CAGCGGCTACCTGGAGATCACGAAGAAGATGGGCAGCAGCT < 41bp 0.493764682923804 0.777668185401057 0.26137242 0.641974 prediction 0.555336370802114 Functional Gain - CELP ENSG00000170827 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:135962253 chr9:135962254 . . 0 22 hm5C_associated_SNPs_104058 0 0 0 0 1 CELP chr9:135962173 3'AG 135962173 Downstream 82bp
chr11 88911891 88911891 1 + C A LUAD 88911887 + 88911867 88911907 41 ATGAGTACATGGGAGGTCAGCACCCCACAAATCCTAACTTA ATGAGTACATGGGAGGTCAGCACCACACAAATCCTAACTTA < 41bp 0.370559478942933 0.777640133109589 0.36603335 0.48869663 prediction 0.555280266219178 Functional Gain - TYR ENSG00000077498 CDS Human protein_coding chr11:88911887 chr11:88911891 nonsynonymous SNV 0.163 5 25 hm5C_associated_SNPs_104059 0 0 0 0 1 TYR chr11:88911940 5'GT 88911940 Upstream 50bp
chr2 99812127 99812127 1 + T G KIRC 99812124 + 99812104 99812144 41 GCACTGGGGAGTTAGTAGTGCAGTGGCATCTGAAACCTGTG GCACTGGGGAGTTAGTAGTGCAGGGGCATCTGAAACCTGTG < 41bp 0.394647725180809 0.777597774021614 0.09389773 0.53625286 prediction 0.555195548043227 Functional Gain - MRPL30 ENSG00000185414;ENSG00000241962 CDS Human other chr2:99812124 chr2:99812127 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_104061 0 0 1 0 2 MRPL30 chr2:99812036 3'AG 99812036 Downstream 92bp
chr2 99812127 99812127 1 + T G KIRC 99812124 + 99812104 99812144 41 GCACTGGGGAGTTAGTAGTGCAGTGGCATCTGAAACCTGTG GCACTGGGGAGTTAGTAGTGCAGGGGCATCTGAAACCTGTG < 41bp 0.394647725180809 0.777597774021614 0.09389773 0.53625286 prediction 0.555195548043227 Functional Gain - MRPL30 ENSG00000185414;ENSG00000241962 CDS Human other chr2:99812124 chr2:99812127 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_104061 0 0 1 0 2 MRPL30 chr2:99812219 5'GT 99812219 Upstream 93bp
chr12 31116783 31116783 1 + C A LUAD 31116779 + 31116759 31116799 41 AGGTCGGGGGAGCAGCCGTCCTGGCTGTGGGCATCTGGACC AGGTCGGGGGAGCAGCCGTCCTGGATGTGGGCATCTGGACC < 41bp 0.634474681332965 0.912056017368645 0.20901528 0.26872113 prediction 0.555162672071361 Functional Gain - TSPAN11 ENSG00000110900 CDS Human protein_coding chr12:31116779 chr12:31116783 nonsynonymous SNV 0.914 4 25 hm5C_associated_SNPs_104063 0 0 0 0 1 TSPAN11 chr12:31116761 3'AG 31116761 Downstream 23bp
chr15 59808891 59808891 1 + C A ESCA 59808887 + 59808867 59808907 41 GAAGAAGCTCAGCCAGATGTCAGCCAGGCTTGACAAAATAG GAAGAAGCTCAGCCAGATGTCAGCAAGGCTTGACAAAATAG < 41bp 0.363262849362996 0.777576384373073 0.0698992 0.28483158 prediction 0.555152768746145 Functional Gain - FAM81A ENSG00000157470 CDS Human protein_coding chr15:59808887 chr15:59808891 synonymous SNV . 0 25 hm5C_associated_SNPs_104064 0 0 0 0 1 FAM81A chr15:59808844 3'AG 59808844 Downstream 48bp
chr12 8248294 8248294 1 + C A UCEC 8248290 + 8248270 8248310 41 CTTGTGGGGAGACTTCAGCACTGCCTCCAGGTAATGGGCAT CTTGTGGGGAGACTTCAGCACTGCATCCAGGTAATGGGCAT < 41bp 0.364079275331662 0.777573707598711 0.027949423 0.23369792 prediction 0.555147415197423 Functional Gain - NECAP1 ENSG00000089818 CDS Human protein_coding chr12:8248290 chr12:8248294 synonymous SNV . 0 25 hm5C_associated_SNPs_104065 0 0 1 0 2 NECAP1 chr12:8248197 3'AG 8248197 Downstream 98bp
chr12 8248294 8248294 1 + C A UCEC 8248290 + 8248270 8248310 41 CTTGTGGGGAGACTTCAGCACTGCCTCCAGGTAATGGGCAT CTTGTGGGGAGACTTCAGCACTGCATCCAGGTAATGGGCAT < 41bp 0.364079275331662 0.777573707598711 0.027949423 0.23369792 prediction 0.555147415197423 Functional Gain - NECAP1 ENSG00000089818 CDS Human protein_coding chr12:8248290 chr12:8248294 synonymous SNV . 0 25 hm5C_associated_SNPs_104065 0 0 1 0 2 NECAP1 chr12:8248299 5'GT 8248299 Upstream 6bp
chr12 20769251 20769251 1 + T A BLCA 20769247 + 20769227 20769267 41 ACCTCGGCCACAGGTCTACCCACCTTGGAGCCTGCACCAGT ACCTCGGCCACAGGTCTACCCACCATGGAGCCTGCACCAGT < 41bp 0.445747805114068 0.777564139584881 0.13788718 0.21780765 prediction 0.555128279169762 Functional Gain - PDE3A ENSG00000172572 CDS Human protein_coding chr12:20769247 chr12:20769251 nonsynonymous SNV 0.987 2 25 hm5C_associated_SNPs_104066 0 0 0 0 2 PDE3A chr12:20769164 3'AG 20769164 Downstream 88bp
chr12 20769251 20769251 1 + T A BLCA 20769247 + 20769227 20769267 41 ACCTCGGCCACAGGTCTACCCACCTTGGAGCCTGCACCAGT ACCTCGGCCACAGGTCTACCCACCATGGAGCCTGCACCAGT < 41bp 0.445747805114068 0.777564139584881 0.13788718 0.21780765 prediction 0.555128279169762 Functional Gain - PDE3A ENSG00000172572 CDS Human protein_coding chr12:20769247 chr12:20769251 nonsynonymous SNV 0.987 2 25 hm5C_associated_SNPs_104066 0 0 0 0 2 PDE3A chr12:20769318 5'GT 20769318 Upstream 68bp
chr6 152163816 152163816 1 + C A HNSC 152163812 + 152163792 152163832 41 GGGAAGTATGGCTATGGAATCTGCCAAGGAGACTCGCTACT GGGAAGTATGGCTATGGAATCTGCAAAGGAGACTCGCTACT < 41bp 0.427285320464221 0.777555001367565 0.11626744 0.42057365 prediction 0.555110002735129 Functional Gain - ESR1 ENSG00000091831 CDS Human protein_coding chr6:152163812 chr6:152163816 synonymous SNV . 0 25 hm5C_associated_SNPs_104067 0 0 0 0 1 ESR1 chr6:152163913 5'GT 152163913 Upstream 98bp
chr1 227171472 227171472 1 + C G rs541611601 227171471 + 227171451 227171491 41 CCCTGGCCCAGGCCTGTTCCCCGAGCACCTGATCGACGTGC CCCTGGCCCAGGCCTGTTCCCGGAGCACCTGATCGACGTGC < 41bp 0.459421256867819 0.777520242378324 0.82847404 0.91538763 prediction 0.555040484756649 Functional Gain - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227171471 chr1:227171472 synonymous SNV . 0 22 hm5C_associated_SNPs_104072 0 0 1 0 2 COQ8A chr1:227171462 3'AG 227171462 Downstream 11bp
chr1 227171472 227171472 1 + C G rs541611601 227171471 + 227171451 227171491 41 CCCTGGCCCAGGCCTGTTCCCCGAGCACCTGATCGACGTGC CCCTGGCCCAGGCCTGTTCCCGGAGCACCTGATCGACGTGC < 41bp 0.459421256867819 0.777520242378324 0.82847404 0.91538763 prediction 0.555040484756649 Functional Gain - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227171471 chr1:227171472 synonymous SNV . 0 22 hm5C_associated_SNPs_104072 0 0 1 0 2 COQ8A chr1:227171555 5'GT 227171555 Upstream 84bp
chr1 76253189 76253189 1 + C G LUAD 76253188 + 76253168 76253208 41 CTTTATTTTGAAAGGGCACTCCACAGAAGGATGTTATTATC CTTTATTTTGAAAGGGCACTCGACAGAAGGATGTTATTATC < 41bp 0.49467750261197 0.777499850339758 0.2468018 0.23414728 prediction 0.554999700679515 Functional Gain - RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76253188 chr1:76253189 nonsynonymous SNV 0.796 1 22 hm5C_associated_SNPs_104074 0 0 1 0 1 RABGGTB chr1:76253182 3'AG 76253182 Downstream 8bp
chr14 56585389 56585389 1 + C G LUAD 56585388 + 56585368 56585408 41 AGCGGGGCTCCATGTTTTCCCCTGGCCAGGAGGAACACTGC AGCGGGGCTCCATGTTTTCCCGTGGCCAGGAGGAACACTGC < 41bp 0.526422203309169 0.803897807308221 0.055363685 0.36262348 prediction 0.554951207998103 Functional Gain - PELI2 ENSG00000139946 CDS Human protein_coding chr14:56585388 chr14:56585389 nonsynonymous SNV 0.988 1 22 hm5C_associated_SNPs_104077 0 0 1 0 1 PELI2 chr14:56585455 5'GT 56585455 Upstream 67bp
chr1 22852789 22852789 1 + C G LUSC 22852788 + 22852768 22852808 41 CGCAGGTGTTTGTGACGTTGCCAGATTCTCAGGCATCTCAG CGCAGGTGTTTGTGACGTTGCGAGATTCTCAGGCATCTCAG < 41bp 0.530742876753621 0.808213267564698 0.90943766 0.9240955 prediction 0.554940781622153 Functional Gain - ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22852788 chr1:22852789 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_104080 0 0 1 0 1 ZBTB40 chr1:22852695 3'AG 22852695 Downstream 95bp
chr11 94038848 94038848 1 + C A LUSC 94038844 + 94038824 94038864 41 CTGCTAGAGCTGTGGACAGTCATGCCCACCTGGGCTGGGGA CTGCTAGAGCTGTGGACAGTCATGACCACCTGGGCTGGGGA < 41bp 0.403258905974881 0.777440124199775 0.5134494 0.5564381 prediction 0.55488024839955 Functional Gain - IZUMO1R ENSG00000183560 CDS Human protein_coding chr11:94038844 chr11:94038848 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_104083 0 0 0 0 1 IZUMO1R chr11:94038940 5'GT 94038940 Upstream 93bp
chr19 41725367 41725367 1 + T G OV 41725365 + 41725345 41725385 41 CTTGGCGCTGTGCGGCTGGGCGTGCATGGCCCCCAGGGGTG CTTGGCGCTGTGCGGCTGGGCGGGCATGGCCCCCAGGGGTG < 41bp 0.589539463602682 0.866956958737721 0.3500686 0.837396 prediction 0.554834990270078 Functional Gain - AXL ENSG00000167601 CDS Human protein_coding chr19:41725365 chr19:41725367 nonsynonymous SNV 0.122 0 23 hm5C_associated_SNPs_104084 0 0 1 0 1 AXL chr19:41725382 5'GT 41725382 Upstream 16bp
chr17 7317763 7317763 1 + C A PRAD 7317759 + 7317739 7317779 41 GTTCGATGGCTCAGTCCTGGCTGCCTATGGCAACGTCATTG GTTCGATGGCTCAGTCCTGGCTGCATATGGCAACGTCATTG < 41bp 0.354984309413687 0.777387553583458 0.08717099 0.5890981 prediction 0.554775107166917 Functional Gain - NLGN2 ENSG00000169992 CDS Human protein_coding chr17:7317759 chr17:7317763 synonymous SNV . 0 25 hm5C_associated_SNPs_104088 0 0 0 0 1 NLGN2 chr17:7317812 5'GT 7317812 Upstream 50bp
chrX 149531751 149531751 1 + C G rs782493703 149531750 + 149531730 149531770 41 GCTGCCCGCGCCGGCGGCCGCCCGCCCCTCGGACACTGCCC GCTGCCCGCGCCGGCGGCCGCGCGCCCCTCGGACACTGCCC < 41bp 0.532131226432663 0.809501697880844 0.3205487 0.5685712 prediction 0.554740942896362 Functional Gain - MAMLD1 ENSG00000013619 UTR5 Human protein_coding chrX:149531750 chrX:149531751 . . 0 22 hm5C_associated_SNPs_104091 0 0 0 0 1 MAMLD1 chrX:149531797 5'GT 149531797 Upstream 47bp
chr19 35551550 35551550 1 + C G UCEC 35551549 + 35551529 35551569 41 AGGCGGAACCGGGTCCTGTCCCGATGGCGAGTGTTTGCCGG AGGCGGAACCGGGTCCTGTCCGGATGGCGAGTGTTTGCCGG < 41bp 0.467893774801989 0.777337897096802 0.17154485 0.5625905 prediction 0.554675794193604 Functional Gain - HPN ENSG00000105707 CDS Human protein_coding chr19:35551549 chr19:35551550 nonsynonymous SNV 0.988 2 22 hm5C_associated_SNPs_104095 0 0 1 0 1 HPN chr19:35551531 3'AG 35551531 Downstream 20bp
chr20 57019226 57019226 1 + C A LAML 57019222 + 57019202 57019242 41 GGGAAGGAAGAAGGCCTTAGCACCCGGCTCTTGGCTCTGGT GGGAAGGAAGAAGGCCTTAGCACCAGGCTCTTGGCTCTGGT < 41bp 0.378514206171239 0.777334345443751 0.28442514 0.33461416 prediction 0.554668690887501 Functional Gain - VAPB ENSG00000124164 CDS Human protein_coding chr20:57019222 chr20:57019226 synonymous SNV . 0 25 hm5C_associated_SNPs_104096 0 0 1 1 1 VAPB chr20:57019133 3'AG 57019133 Downstream 94bp
chr19 46733560 46733560 1 + T G rs187146043 46733557 + 46733537 46733577 41 CCATGACTCCTTACCTGATGCTGTGCCAGCCACACAAGAGA CCATGACTCCTTACCTGATGCTGGGCCAGCCACACAAGAGA < 41bp 0.38082828032915 0.777333495696828 0.20494804 0.2985766 prediction 0.554666991393657 Functional Gain - IGFL1 ENSG00000188293 CDS Human protein_coding chr19:46733557 chr19:46733560 nonsynonymous SNV 0.023 3 24 hm5C_associated_SNPs_104097 0 0 0 0 1 IGFL1 chr19:46733531 3'AG 46733531 Downstream 30bp
chr10 43604576 43604576 1 + C A UCEC 43604572 + 43604552 43604592 41 AGACTTCCAGGGCCCAGGAGCGGGCGTCCTCTTGCTCCACT AGACTTCCAGGGCCCAGGAGCGGGAGTCCTCTTGCTCCACT < 41bp 0.632469049063893 0.90978309939089 0.93282664 0.93877363 prediction 0.554628100653994 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43604572 chr10:43604576 synonymous SNV . 0 25 hm5C_associated_SNPs_104100 0 0 0 0 1 RET chr10:43604479 3'AG 43604479 Downstream 98bp
chr4 103534694 103534694 1 + C A HNSC 103534690 + 103534670 103534710 41 GCCCAGTGAAGACCACCTCTCAGGCCCACTCGCTGCCTCTC GCCCAGTGAAGACCACCTCTCAGGACCACTCGCTGCCTCTC < 41bp 0.633550562516975 0.910859233777471 0.93374705 0.94125646 prediction 0.554617342520992 Functional Gain - NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103534690 chr4:103534694 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_104102 0 0 0 0 1 NFKB1 chr4:103534738 5'GT 103534738 Upstream 45bp
chr20 31601670 31601670 1 + C A rs45589833 31601666 + 31601646 31601686 41 TGTGGAACTGCTGGCTGACACCCGCGTGACCCAGAGCTCCA TGTGGAACTGCTGGCTGACACCCGAGTGACCCAGAGCTCCA < 41bp 0.633735703828309 0.911030643475164 0.31098223 0.8208331 prediction 0.554589879293711 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31601666 chr20:31601670 synonymous SNV . 0 25 hm5C_associated_SNPs_104103 0 0 1 0 2 BPIFB2 chr20:31601616 3'AG 31601616 Downstream 55bp
chr20 31601670 31601670 1 + C A rs45589833 31601666 + 31601646 31601686 41 TGTGGAACTGCTGGCTGACACCCGCGTGACCCAGAGCTCCA TGTGGAACTGCTGGCTGACACCCGAGTGACCCAGAGCTCCA < 41bp 0.633735703828309 0.911030643475164 0.31098223 0.8208331 prediction 0.554589879293711 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31601666 chr20:31601670 synonymous SNV . 0 25 hm5C_associated_SNPs_104103 0 0 1 0 2 BPIFB2 chr20:31601762 5'GT 31601762 Upstream 93bp
chr11 126110771 126110771 1 + C G SKCM 126110767 + 126110747 126110787 41 AGGCATTAGTGCTGCAGTTGCGCCCCAAGTTCCAGCCCTCA AGGCATTAGTGCTGCAGTTGCGCCGCAAGTTCCAGCCCTCA < 41bp 0.496087886707649 0.777268676392328 0.13073266 0.33313972 prediction 0.554537352784657 Functional Gain - FAM118B ENSG00000197798 CDS Human protein_coding chr11:126110767 chr11:126110771 synonymous SNV . 0 25 hm5C_associated_SNPs_104105 0 0 0 0 1 FAM118B chr11:126110687 3'AG 126110687 Downstream 85bp
chr12 108098446 108098446 1 + T A SKCM 108098442 + 108098422 108098462 41 TTTGTATGACTGCCGAAGTCCAGATGAAAGCCATCGAATGT TTTGTATGACTGCCGAAGTCCAGAAGAAAGCCATCGAATGT < 41bp 0.460698890196193 0.777221350898812 0.32934773 0.20978165 prediction 0.554442701797623 Functional Gain - PWP1 ENSG00000136045 CDS Human protein_coding chr12:108098442 chr12:108098446 nonsynonymous SNV 0.784 0 25 hm5C_associated_SNPs_104110 0 0 1 0 2 PWP1 chr12:108098413 3'AG 108098413 Downstream 34bp
chr12 108098446 108098446 1 + T A SKCM 108098442 + 108098422 108098462 41 TTTGTATGACTGCCGAAGTCCAGATGAAAGCCATCGAATGT TTTGTATGACTGCCGAAGTCCAGAAGAAAGCCATCGAATGT < 41bp 0.460698890196193 0.777221350898812 0.32934773 0.20978165 prediction 0.554442701797623 Functional Gain - PWP1 ENSG00000136045 CDS Human protein_coding chr12:108098442 chr12:108098446 nonsynonymous SNV 0.784 0 25 hm5C_associated_SNPs_104110 0 0 1 0 2 PWP1 chr12:108098524 5'GT 108098524 Upstream 79bp
chr10 105128280 105128280 1 + C A BLCA 105128276 + 105128256 105128296 41 GGCCACGGTCGTCTCAGGTTCAGCCTCAGGTCCTGCGGCTC GGCCACGGTCGTCTCAGGTTCAGCATCAGGTCCTGCGGCTC < 41bp 0.622485323322713 0.899692028491496 0.072111756 0.07896721 prediction 0.554413410337567 Functional Gain - TAF5 ENSG00000148835 CDS Human protein_coding chr10:105128276 chr10:105128280 synonymous SNV . 0 25 hm5C_associated_SNPs_104111 0 0 1 0 1 TAF5 chr10:105128305 5'GT 105128305 Upstream 26bp
chr4 70156323 70156323 1 + C G LUAD 70156322 + 70156302 70156342 41 AATCCTAGGTCTTCCAAAAACCAGAGCTTTTATAACTCATG AATCCTAGGTCTTCCAAAAACGAGAGCTTTTATAACTCATG < 41bp 0.49031572758362 0.777201039226866 0.18334267 0.27774924 prediction 0.554402078453732 Functional Gain - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70156322 chr4:70156323 synonymous SNV . 0 22 hm5C_associated_SNPs_104112 0 0 0 0 1 UGT2B28 chr4:70156310 3'AG 70156310 Downstream 14bp
chr5 40681879 40681879 1 + C A HNSC 40681875 + 40681855 40681895 41 TTTCGGCGCCGCCGGAGCTTCCGCCGCATCGCGGGCGCCGA TTTCGGCGCCGCCGGAGCTTCCGCAGCATCGCGGGCGCCGA < 41bp 0.627941954641195 0.905091345246493 0.8665674 0.87906337 prediction 0.554298781210596 Functional Gain - PTGER4 ENSG00000171522 CDS Human protein_coding chr5:40681875 chr5:40681879 nonsynonymous SNV 0.953 2 25 hm5C_associated_SNPs_104120 0 0 0 0 1 PTGER4 chr5:40681962 5'GT 40681962 Upstream 84bp
chr17 21094308 21094308 1 + C G HNSC 21094307 + 21094287 21094327 41 CGAAGCCCTGTGGAGGTGGCCCAGGATGTTCTTGCTGCTGT CGAAGCCCTGTGGAGGTGGCCGAGGATGTTCTTGCTGCTGT < 41bp 0.476304168635129 0.777130025991744 0.4834271 0.87570286 prediction 0.554260051983487 Functional Gain - DHRS7B ENSG00000109016 CDS Human protein_coding chr17:21094307 chr17:21094308 nonsynonymous SNV 0.646 0 22 hm5C_associated_SNPs_104123 0 0 1 0 1 DHRS7B chr17:21094261 3'AG 21094261 Downstream 48bp
chr16 681374 681374 1 + C A UCEC 681370 + 681350 681390 41 TGCCCCAACCAGCTCAGCCCCAACCTGTGGGTGGACGCCCA TGCCCCAACCAGCTCAGCCCCAACATGTGGGTGGACGCCCA < 41bp 0.381648270833368 0.777121785556635 0.06602934 0.1537435 prediction 0.55424357111327 Functional Gain - WFIKKN1 ENSG00000127578 CDS Human protein_coding chr16:681370 chr16:681374 nonsynonymous SNV 0.990 4 25 hm5C_associated_SNPs_104124 0 0 1 0 1 WFIKKN1 chr16:681424 5'GT 681424 Upstream 51bp
chr19 48908574 48908574 1 + C G LUAD 48908570 + 48908550 48908590 41 CTGAGCTCGGCCACGACTGTCGCGCCCAGAACCGCACCCAC CTGAGCTCGGCCACGACTGTCGCGGCCAGAACCGCACCCAC < 41bp 0.499215400823148 0.777105519639839 0.3514191 0.89980525 prediction 0.554211039279679 Functional Gain - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48908570 chr19:48908574 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_104127 0 0 0 0 1 GRIN2D chr19:48908610 5'GT 48908610 Upstream 37bp
chr15 42114174 42114174 1 + T A LUSC 42114170 + 42114150 42114190 41 GGAATCCTGACAGTGAGTTCCAAGTGCAGGCTCCAGCCCGG GGAATCCTGACAGTGAGTTCCAAGAGCAGGCTCCAGCCCGG < 41bp 0.479599903854442 0.777089006938898 0.22152701 0.3136003 prediction 0.554178013877795 Functional Gain - MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42114170 chr15:42114174 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_104128 0 0 1 0 1 MAPKBP1 chr15:42114163 3'AG 42114163 Downstream 12bp
chr19 50168913 50168913 1 - G C rs151315907 50168917 - 50168897 50168937 41 AAGACAGGGGTGGGTTCCAGCTGCCCGCACGCCCCGACCTT AAGACAGGGGTGGGTTCCAGCTGCGCGCACGCCCCGACCTT < 41bp 0.492525530976324 0.777070333108856 0.074766815 0.15067169 prediction 0.554140666217711 Functional Gain - BCL2L12;IRF3 ENSG00000126453;ENSG00000126456 UTR5 Human other chr19:50168917 chr19:50168913 . . 0 25 hm5C_associated_SNPs_104134 0 0 1 0 1 BCL2L12;IRF3 chr19:50168888 5'GT 50168888 Upstream 26bp
chr12 19282753 19282753 1 + T G HNSC 19282751 + 19282731 19282771 41 GACATGGCGGCGGATCTGAACCTGGAGTGGATCTCCCTGCC GACATGGCGGCGGATCTGAACCGGGAGTGGATCTCCCTGCC < 41bp 0.453407764636001 0.777059964919356 0.79713786 0.9096582 prediction 0.554119929838711 Functional Gain - PLEKHA5 ENSG00000052126 CDS Human protein_coding chr12:19282751 chr12:19282753 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_104135 0 0 1 0 1 PLEKHA5 chr12:19282822 5'GT 19282822 Upstream 70bp
chr5 76249945 76249945 1 + C G rs34761141 76249944 + 76249924 76249964 41 AGCCTTCTTCATCAGCGAGCCCGAGGAGTTCATTACCATCC AGCCTTCTTCATCAGCGAGCCGGAGGAGTTCATTACCATCC < 41bp 0.463153584984409 0.777045056836249 0.20637786 0.88686585 prediction 0.554090113672499 Functional Gain - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76249944 chr5:76249945 synonymous SNV . 0 22 hm5C_associated_SNPs_104139 0 0 0 0 1 CRHBP chr5:76250011 5'GT 76250011 Upstream 67bp
chr5 82373342 82373342 1 + C A rs113843419 82373338 + 82373318 82373358 41 GGGATTTAGATCACGTCCCGCAGGCCGGCGGAAGTAGCTGA GGGATTTAGATCACGTCCCGCAGGACGGCGGAAGTAGCTGA < 41bp 0.428944583696973 0.777033355923267 0.32065713 0.36952168 prediction 0.554066711846534 Functional Gain - XRCC4 ENSG00000152422 UTR5 Human protein_coding chr5:82373338 chr5:82373342 . . 0 25 hm5C_associated_SNPs_104141 0 0 0 0 1 XRCC4 chr5:82373434 5'GT 82373434 Upstream 93bp
chr19 19166101 19166101 1 + C G rs199554736 19166097 + 19166077 19166117 41 CTCGTGAAGCAAGTGCTGAGCACCCTGCGAGCCATCGCAGG CTCGTGAAGCAAGTGCTGAGCACCGTGCGAGCCATCGCAGG < 41bp 0.495864830549316 0.7770009978068 0.049223393 0.15654638 prediction 0.5540019956136 Functional Gain - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19166097 chr19:19166101 nonsynonymous SNV 0.674 3 25 hm5C_associated_SNPs_104143 0 0 1 0 1 ARMC6 chr19:19166074 3'AG 19166074 Downstream 28bp
chr2 234237227 234237227 1 + C A OV 234237223 + 234237203 234237243 41 TGGCAGTTCTTCATGTCTGACAAGCCCCTGCACCTTGCGGT TGGCAGTTCTTCATGTCTGACAAGACCCTGCACCTTGCGGT < 41bp 0.373724643836378 0.776995723480586 0.2383421 0.2737006 prediction 0.553991446961171 Functional Gain - SAG ENSG00000130561 CDS Human protein_coding chr2:234237223 chr2:234237227 nonsynonymous SNV 0.981 3 25 hm5C_associated_SNPs_104145 0 0 0 0 1 SAG chr2:234237259 5'GT 234237259 Upstream 33bp
chr6 168228529 168228529 1 + T G rs6900911 168228526 + 168228506 168228546 41 CGGGGCCGCGAGGAAGGGCCCTCTGCGGCGGCCTCTGCCCG CGGGGCCGCGAGGAAGGGCCCTCGGCGGCGGCCTCTGCCCG < 41bp 0.481764078465768 0.776936064036653 0.47704566 0.7498887 prediction 0.553872128073306 Functional Gain - AFDN ENSG00000130396 intronic Human protein_coding chr6:168228526 chr6:168228529 . . 0 24 hm5C_associated_SNPs_104150 0 0 1 0 1 AFDN chr6:168228612 5'GT 168228612 Upstream 84bp
chr6 20402810 20402810 1 + C A rs189058327 20402806 + 20402786 20402826 41 GCAGAGCCGGGCTGCTGCAGCAGCCACCAGCGCTGGGACGC GCAGAGCCGGGCTGCTGCAGCAGCAACCAGCGCTGGGACGC < 41bp 0.612108801339051 0.889021928081823 0.4703413 0.5389384 prediction 0.553826253485544 Functional Gain - E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402806 chr6:20402810 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_104152 0 0 0 0 1 E2F3 chr6:20402856 5'GT 20402856 Upstream 47bp
chr1 227954742 227954742 1 + C G rs34209229 227954738 + 227954718 227954758 41 CACAGCACTGCACCTGCAGACAAGCCTGCCAGCCCTTTCTG CACAGCACTGCACCTGCAGACAAGGCTGCCAGCCCTTTCTG < 41bp 0.498330634828437 0.776895225077798 0.2482959 0.79091513 prediction 0.553790450155595 Functional Gain - SNAP47 ENSG00000143740 CDS Human protein_coding chr1:227954738 chr1:227954742 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_104155 0 0 1 0 2 SNAP47 chr1:227954660 3'AG 227954660 Downstream 83bp
chr1 227954742 227954742 1 + C G rs34209229 227954738 + 227954718 227954758 41 CACAGCACTGCACCTGCAGACAAGCCTGCCAGCCCTTTCTG CACAGCACTGCACCTGCAGACAAGGCTGCCAGCCCTTTCTG < 41bp 0.498330634828437 0.776895225077798 0.2482959 0.79091513 prediction 0.553790450155595 Functional Gain - SNAP47 ENSG00000143740 CDS Human protein_coding chr1:227954738 chr1:227954742 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_104155 0 0 1 0 2 SNAP47 chr1:227954784 5'GT 227954784 Upstream 43bp
chr16 69373944 69373944 1 + C G LUSC 69373940 + 69373920 69373960 41 ATCTTCAACTGCTGGTGGACCGGCCCGATGGCACCTACTGT ATCTTCAACTGCTGGTGGACCGGCGCGATGGCACCTACTGT < 41bp 0.520824423929597 0.797710042828076 0.16710836 0.54294896 prediction 0.553771237796959 Functional Gain - NIP7 ENSG00000132603 CDS Human protein_coding chr16:69373940 chr16:69373944 nonsynonymous SNV 0.847 2 25 hm5C_associated_SNPs_104156 0 0 1 0 2 NIP7 chr16:69373909 3'AG 69373909 Downstream 36bp
chr16 69373944 69373944 1 + C G LUSC 69373940 + 69373920 69373960 41 ATCTTCAACTGCTGGTGGACCGGCCCGATGGCACCTACTGT ATCTTCAACTGCTGGTGGACCGGCGCGATGGCACCTACTGT < 41bp 0.520824423929597 0.797710042828076 0.16710836 0.54294896 prediction 0.553771237796959 Functional Gain - NIP7 ENSG00000132603 CDS Human protein_coding chr16:69373940 chr16:69373944 nonsynonymous SNV 0.847 2 25 hm5C_associated_SNPs_104156 0 0 1 0 2 NIP7 chr16:69373995 5'GT 69373995 Upstream 52bp
chr1 44443709 44443709 1 + C A rs56842927 44443705 + 44443685 44443725 41 ATGTGTGGGTGGGGCCGTGCCTCACTTTTATTTATTGCTGG ATGTGTGGGTGGGGCCGTGCCTCAATTTTATTTATTGCTGG < 41bp 0.405941071628593 0.776877222335683 0.11501053 0.79804677 prediction 0.553754444671366 Functional Gain - ATP6V0B ENSG00000117410 UTR3 Human protein_coding chr1:44443705 chr1:44443709 . . 0 25 hm5C_associated_SNPs_104157 0 0 1 1 1 ATP6V0B chr1:44443653 3'AG 44443653 Downstream 57bp
chr12 124081212 124081212 1 + T A BRCA 124081208 + 124081188 124081228 41 CCTTCTTTGAAGCTCTTGTTCTAGTTGCCATGACATTGGGA CCTTCTTTGAAGCTCTTGTTCTAGATGCCATGACATTGGGA < 41bp 0.555076841374393 0.831949756279509 0.12952492 0.100853354 prediction 0.553745829810232 Functional Gain - TMED2 ENSG00000086598 CDS Human protein_coding chr12:124081208 chr12:124081212 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_104158 0 0 1 0 1 TMED2 chr12:124081152 3'AG 124081152 Downstream 61bp
chr5 34826568 34826568 1 + T A UCEC 34826564 + 34826544 34826584 41 CGCTGCAGCAGCAAGTCAAACAGCTCCAGAACCAGCTGGCG CGCTGCAGCAGCAAGTCAAACAGCACCAGAACCAGCTGGCG < 41bp 0.456117323061224 0.776864846330235 0.10239875 0.27318302 prediction 0.55372969266047 Functional Gain - RAI14 ENSG00000039560 CDS Human protein_coding chr5:34826564 chr5:34826568 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_104159 0 0 0 0 1 RAI14 chr5:34826584 5'GT 34826584 Upstream 17bp
chrX 49846431 49846431 1 + T G LGG 49846429 + 49846409 49846449 41 AAAGAGGGCCCTCTAGTGCACGTGGCTTGCTGCTGTGGGAA AAAGAGGGCCCTCTAGTGCACGGGGCTTGCTGCTGTGGGAA < 41bp 0.429609825007113 0.776863179634918 0.69018275 0.9289743 prediction 0.553726359269835 Functional Gain - CLCN5 ENSG00000171365 CDS Human protein_coding chrX:49846429 chrX:49846431 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_104160 0 0 0 0 1 CLCN5 chrX:49846504 5'GT 49846504 Upstream 74bp
chr7 148484096 148484096 1 + T A GBM 148484092 + 148484072 148484112 41 CTTTGCCAGATGGTTGTCTTCAAGTACATAGAAGACAAAGA CTTTGCCAGATGGTTGTCTTCAAGAACATAGAAGACAAAGA < 41bp 0.464219932081495 0.776859795065562 0.2808712 0.24808979 prediction 0.553719590131124 Functional Gain - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148484092 chr7:148484096 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_104161 0 0 1 0 1 CUL1 chr7:148484081 3'AG 148484081 Downstream 16bp
chr16 332515 332515 1 + C A LUAD 332511 + 332491 332531 41 CTCAAGTGTCTGCACCACACCTACCGCCGGGGCCTGCGCGG CTCAAGTGTCTGCACCACACCTACAGCCGGGGCCTGCGCGG < 41bp 0.397326425906586 0.776835019333274 0.07508871 0.25982106 prediction 0.553670038666548 Functional Gain - ARHGDIG ENSG00000242173 CDS Human protein_coding chr16:332511 chr16:332515 nonsynonymous SNV 0.974 4 25 hm5C_associated_SNPs_104164 0 0 0 0 2 ARHGDIG chr16:332467 3'AG 332467 Downstream 49bp
chr16 332515 332515 1 + C A LUAD 332511 + 332491 332531 41 CTCAAGTGTCTGCACCACACCTACCGCCGGGGCCTGCGCGG CTCAAGTGTCTGCACCACACCTACAGCCGGGGCCTGCGCGG < 41bp 0.397326425906586 0.776835019333274 0.07508871 0.25982106 prediction 0.553670038666548 Functional Gain - ARHGDIG ENSG00000242173 CDS Human protein_coding chr16:332511 chr16:332515 nonsynonymous SNV 0.974 4 25 hm5C_associated_SNPs_104164 0 0 0 0 2 ARHGDIG chr16:332530 5'GT 332530 Upstream 16bp
chr7 148485727 148485727 1 + C A GBM 148485723 + 148485703 148485743 41 GGCGTGAGCAAAGATCTGAACGAGCAATTCAAAAAGCACTT GGCGTGAGCAAAGATCTGAACGAGAAATTCAAAAAGCACTT < 41bp 0.369103447442005 0.77681894592282 0.26663372 0.25612694 prediction 0.553637891845641 Functional Gain - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148485723 chr7:148485727 nonsynonymous SNV 0.986 1 25 hm5C_associated_SNPs_104165 0 0 1 0 2 CUL1 chr7:148485649 3'AG 148485649 Downstream 79bp
chr7 148485727 148485727 1 + C A GBM 148485723 + 148485703 148485743 41 GGCGTGAGCAAAGATCTGAACGAGCAATTCAAAAAGCACTT GGCGTGAGCAAAGATCTGAACGAGAAATTCAAAAAGCACTT < 41bp 0.369103447442005 0.77681894592282 0.26663372 0.25612694 prediction 0.553637891845641 Functional Gain - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148485723 chr7:148485727 nonsynonymous SNV 0.986 1 25 hm5C_associated_SNPs_104165 0 0 1 0 2 CUL1 chr7:148485766 5'GT 148485766 Upstream 40bp
chr4 129770210 129770210 1 + C A THCA 129770206 + 129770186 129770226 41 CGTGTCATCAGGCTCTGAGCCTCCCGAGTTGGGCTATGTGG CGTGTCATCAGGCTCTGAGCCTCCAGAGTTGGGCTATGTGG < 41bp 0.3425531467839 0.776809429301871 0.19856235 0.95674324 prediction 0.553618858603741 Functional Gain - JADE1 ENSG00000077684 CDS Human protein_coding chr4:129770206 chr4:129770210 synonymous SNV . 0 25 hm5C_associated_SNPs_104169 0 0 1 0 1 JADE1 chr4:129770171 3'AG 129770171 Downstream 40bp
chr20 18507054 18507054 1 + T A UCEC 18507050 + 18507030 18507070 41 ACACAGGAGCCAGGATCATGCTGTTTACTGGAGGTCCCCCT ACACAGGAGCCAGGATCATGCTGTATACTGGAGGTCCCCCT < 41bp 0.449590502069028 0.776802375118445 0.13876459 0.20806018 prediction 0.553604750236891 Functional Gain - SEC23B ENSG00000101310 CDS Human protein_coding chr20:18507050 chr20:18507054 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_104170 0 0 1 0 1 SEC23B chr20:18507017 3'AG 18507017 Downstream 38bp
chr19 11135020 11135020 1 + T G STAD 11135018 + 11134998 11135038 41 CCCCTGCAGGTGGAGTACGTCATCAAGTGCGACATGTCTGC CCCCTGCAGGTGGAGTACGTCAGCAAGTGCGACATGTCTGC < 41bp 0.458418332317131 0.776798935697228 0.12779608 0.80219924 prediction 0.553597871394457 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11135018 chr19:11135020 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_104171 0 0 1 0 2 SMARCA4 chr19:11135007 3'AG 11135007 Downstream 14bp
chr19 11135020 11135020 1 + T G STAD 11135018 + 11134998 11135038 41 CCCCTGCAGGTGGAGTACGTCATCAAGTGCGACATGTCTGC CCCCTGCAGGTGGAGTACGTCAGCAAGTGCGACATGTCTGC < 41bp 0.458418332317131 0.776798935697228 0.12779608 0.80219924 prediction 0.553597871394457 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11135018 chr19:11135020 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_104171 0 0 1 0 2 SMARCA4 chr19:11135114 5'GT 11135114 Upstream 95bp
chr5 133481955 133481955 1 + C G rs141612090 133481954 + 133481934 133481974 41 CGGTACTTACCCGGAGAAGGCCGCTGCCCCAGCCCCGTTCC CGGTACTTACCCGGAGAAGGCGGCTGCCCCAGCCCCGTTCC < 41bp 0.482560550708332 0.776793790971931 0.16697294 0.896162 prediction 0.553587581943863 Functional Gain - TCF7 ENSG00000081059 CDS Human protein_coding chr5:133481954 chr5:133481955 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_104172 0 0 1 0 2 TCF7 chr5:133481892 3'AG 133481892 Downstream 64bp
chr5 133481955 133481955 1 + C G rs141612090 133481954 + 133481934 133481974 41 CGGTACTTACCCGGAGAAGGCCGCTGCCCCAGCCCCGTTCC CGGTACTTACCCGGAGAAGGCGGCTGCCCCAGCCCCGTTCC < 41bp 0.482560550708332 0.776793790971931 0.16697294 0.896162 prediction 0.553587581943863 Functional Gain - TCF7 ENSG00000081059 CDS Human protein_coding chr5:133481954 chr5:133481955 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_104172 0 0 1 0 2 TCF7 chr5:133481915 3'AG 133481915 Downstream 41bp
chr16 67208108 67208108 1 + C A UCEC 67208104 + 67208084 67208124 41 GCAGGAGCGGCCGTCAGAGACTATCGACCGCGAGCGGAAAC GCAGGAGCGGCCGTCAGAGACTATAGACCGCGAGCGGAAAC < 41bp 0.368235396957994 0.776774459570747 0.0135730505 0.07729173 prediction 0.553548919141494 Functional Gain - NOL3 ENSG00000140939 CDS Human protein_coding chr16:67208104 chr16:67208108 synonymous SNV . 0 25 hm5C_associated_SNPs_104174 0 0 0 0 1 NOL3 chr16:67208065 3'AG 67208065 Downstream 44bp
chr19 35832701 35832701 1 + C G SKCM 35832700 + 35832680 35832720 41 GTGAGAGCGACGCCAACCCTCCCGTCTCCCACTACACCTGG GTGAGAGCGACGCCAACCCTCGCGTCTCCCACTACACCTGG < 41bp 0.458078520672004 0.776768982986304 0.12263489 0.35232827 prediction 0.553537965972609 Functional Gain - CD22 ENSG00000012124 CDS Human protein_coding chr19:35832700 chr19:35832701 nonsynonymous SNV 0.438 2 22 hm5C_associated_SNPs_104175 0 0 0 0 1 CD22 chr19:35832605 3'AG 35832605 Downstream 97bp
chr16 88052077 88052077 1 + C G rs76505268 88052076 + 88052056 88052096 41 GCTGGGCGACGAGAACAACCCCGAGATGCGGGTACGCTGCG GCTGGGCGACGAGAACAACCCGGAGATGCGGGTACGCTGCG < 41bp 0.466051559406307 0.776760176130201 0.52109563 0.93040264 prediction 0.553520352260402 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88052076 chr16:88052077 synonymous SNV . 0 22 hm5C_associated_SNPs_104176 0 0 1 0 1 BANP chr16:88052034 3'AG 88052034 Downstream 44bp
chr19 19606655 19606655 1 + C A UCEC 19606651 + 19606631 19606671 41 CTCGAAGCTGGGGCCACAGGCGAGCTCACAGGTCGTCATGC CTCGAAGCTGGGGCCACAGGCGAGATCACAGGTCGTCATGC < 41bp 0.629511795472127 0.906242567453911 0.9103617 0.89560187 prediction 0.55346154396357 Functional Gain - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19606651 chr19:19606655 nonsynonymous SNV 0.506 0 25 hm5C_associated_SNPs_104178 0 0 1 0 2 GATAD2A chr19:19606563 3'AG 19606563 Downstream 93bp
chr19 19606655 19606655 1 + C A UCEC 19606651 + 19606631 19606671 41 CTCGAAGCTGGGGCCACAGGCGAGCTCACAGGTCGTCATGC CTCGAAGCTGGGGCCACAGGCGAGATCACAGGTCGTCATGC < 41bp 0.629511795472127 0.906242567453911 0.9103617 0.89560187 prediction 0.55346154396357 Functional Gain - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19606651 chr19:19606655 nonsynonymous SNV 0.506 0 25 hm5C_associated_SNPs_104178 0 0 1 0 2 GATAD2A chr19:19606694 5'GT 19606694 Upstream 40bp
chr16 81957190 81957190 1 + C G SKCM 81957189 + 81957169 81957209 41 TCCACAATGTCTCCAAGGAGCCCGGGGGCTGGTAAGGCTGA TCCACAATGTCTCCAAGGAGCGCGGGGGCTGGTAAGGCTGA < 41bp 0.487570840197334 0.776725462742992 0.37877035 0.7396546 prediction 0.553450925485983 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81957189 chr16:81957190 nonsynonymous SNV 0.989 0 22 hm5C_associated_SNPs_104179 0 0 0 0 1 PLCG2 chr16:81957199 5'GT 81957199 Upstream 10bp
chr11 130011950 130011950 1 + T G LIHC 130011948 + 130011928 130011968 41 AGGAAGAGGCAGTATGGCACCATCAGCCACGGGATCGTGGA AGGAAGAGGCAGTATGGCACCAGCAGCCACGGGATCGTGGA < 41bp 0.581271056105164 0.85799019266871 0.042379826 0.18654165 prediction 0.553438273127092 Functional Gain - APLP2 ENSG00000084234 CDS Human protein_coding chr11:130011948 chr11:130011950 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_104180 0 0 1 0 1 APLP2 chr11:130011969 5'GT 130011969 Upstream 20bp
chr22 32871363 32871363 1 + C G BLCA 32871359 + 32871339 32871379 41 CCTGGAGAACATGGCCCGGCCTCCCGGGGGCTCTGGTCCCC CCTGGAGAACATGGCCCGGCCTCCGGGGGGCTCTGGTCCCC < 41bp 0.501853613050702 0.778556291164529 0.21782473 0.704597 prediction 0.553405356227654 Functional Gain - FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32871359 chr22:32871363 synonymous SNV . 0 25 hm5C_associated_SNPs_104181 0 0 1 0 1 FBXO7 chr22:32871385 5'GT 32871385 Upstream 23bp
chr12 132237891 132237891 1 + C G STAD 132237890 + 132237870 132237910 41 GACTAGCAGCGGGGCCACCTCCACAACCACCACCACAAGGT GACTAGCAGCGGGGCCACCTCGACAACCACCACCACAAGGT < 41bp 0.557329239258601 0.833984778790577 0.37992057 0.4049937 prediction 0.553311079063952 Functional Gain - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132237890 chr12:132237891 synonymous SNV . 0 22 hm5C_associated_SNPs_104184 0 0 1 0 1 SFSWAP chr12:132237908 5'GT 132237908 Upstream 18bp
chr7 6630031 6630031 1 + C A KIRC 6630027 + 6630007 6630047 41 GCTGCAGAGCGCGCCGCTGCCCATCGTGGACAAGGGCCCCG GCTGCAGAGCGCGCCGCTGCCCATAGTGGACAAGGGCCCCG < 41bp 0.388374404101748 0.776637418855271 0.08854982 0.12143892 prediction 0.553274837710543 Functional Gain - C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6630027 chr7:6630031 synonymous SNV . 0 25 hm5C_associated_SNPs_104187 0 0 1 0 1 C7orf26 chr7:6630106 5'GT 6630106 Upstream 76bp
chr16 28847439 28847439 1 + C G LUSC 28847438 + 28847418 28847458 41 CTACCCCTACATCGGACACCCCCAAGGTGAGCAGCCTGGCC CTACCCCTACATCGGACACCCGCAAGGTGAGCAGCCTGGCC < 41bp 0.480631763322727 0.776616017993897 0.16354647 0.20589712 prediction 0.553232035987794 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28847438 chr16:28847439 synonymous SNV . 0 22 hm5C_associated_SNPs_104188 0 0 1 0 2 ATXN2L chr16:28847443 5'GT 28847443 Upstream 5bp
chr16 28847439 28847439 1 + C G LUSC 28847438 + 28847418 28847458 41 CTACCCCTACATCGGACACCCCCAAGGTGAGCAGCCTGGCC CTACCCCTACATCGGACACCCGCAAGGTGAGCAGCCTGGCC < 41bp 0.480631763322727 0.776616017993897 0.16354647 0.20589712 prediction 0.553232035987794 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28847438 chr16:28847439 synonymous SNV . 0 22 hm5C_associated_SNPs_104188 0 0 1 0 2 ATXN2L chr16:28847497 5'GT 28847497 Upstream 59bp
chr16 80583497 80583497 1 + C A rs11866734 80583493 + 80583473 80583513 41 CGTGATATTGATCCTCAGAACGACCTGACTTTTCTTAGGAT CGTGATATTGATCCTCAGAACGACATGACTTTTCTTAGGAT < 41bp 0.380634412877031 0.776594367761484 0.0687767 0.09531611 prediction 0.553188735522969 Functional Gain - DYNLRB2 ENSG00000168589 CDS Human protein_coding chr16:80583493 chr16:80583497 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_104192 0 0 0 2 1 DYNLRB2 chr16:80583548 5'GT 80583548 Upstream 52bp
chr9 139564106 139564106 1 + C G rs114826929 139564102 + 139564082 139564122 41 CCGCAGCCCTGGGCTGGCCCCTGCCAGGCCTCGCTACGCGT CCGCAGCCCTGGGCTGGCCCCTGCGAGGCCTCGCTACGCGT < 41bp 0.508407921113284 0.784995340796755 0.1064513 0.29109323 prediction 0.553174839366942 Functional Gain - EGFL7 ENSG00000172889 CDS Human protein_coding chr9:139564102 chr9:139564106 synonymous SNV . 0 25 hm5C_associated_SNPs_104193 0 0 1 0 2 EGFL7 chr9:139564058 3'AG 139564058 Downstream 49bp
chr9 139564106 139564106 1 + C G rs114826929 139564102 + 139564082 139564122 41 CCGCAGCCCTGGGCTGGCCCCTGCCAGGCCTCGCTACGCGT CCGCAGCCCTGGGCTGGCCCCTGCGAGGCCTCGCTACGCGT < 41bp 0.508407921113284 0.784995340796755 0.1064513 0.29109323 prediction 0.553174839366942 Functional Gain - EGFL7 ENSG00000172889 CDS Human protein_coding chr9:139564102 chr9:139564106 synonymous SNV . 0 25 hm5C_associated_SNPs_104193 0 0 1 0 2 EGFL7 chr9:139564173 5'GT 139564173 Upstream 68bp
chr2 138033559 138033559 1 + C A ESCA 138033555 + 138033535 138033575 41 GTCTGTCTGGCAGGGAATAACGGGCAGCAGTGAAGCCTGTG GTCTGTCTGGCAGGGAATAACGGGAAGCAGTGAAGCCTGTG < 41bp 0.45604038784141 0.776544063873261 0.88263273 0.8965098 prediction 0.553088127746522 Functional Gain - THSD7B ENSG00000144229 CDS Human protein_coding chr2:138033555 chr2:138033559 synonymous SNV . 0 25 hm5C_associated_SNPs_104197 0 0 0 0 2 THSD7B chr2:138033493 3'AG 138033493 Downstream 67bp
chr2 138033559 138033559 1 + C A ESCA 138033555 + 138033535 138033575 41 GTCTGTCTGGCAGGGAATAACGGGCAGCAGTGAAGCCTGTG GTCTGTCTGGCAGGGAATAACGGGAAGCAGTGAAGCCTGTG < 41bp 0.45604038784141 0.776544063873261 0.88263273 0.8965098 prediction 0.553088127746522 Functional Gain - THSD7B ENSG00000144229 CDS Human protein_coding chr2:138033555 chr2:138033559 synonymous SNV . 0 25 hm5C_associated_SNPs_104197 0 0 0 0 2 THSD7B chr2:138033596 5'GT 138033596 Upstream 38bp
chr11 65154544 65154544 1 + C G LUAD 65154540 + 65154520 65154560 41 GAAGGCAGTGCCGGGCAGCCCGGCCCCGCTGAGCGATCCCA GAAGGCAGTGCCGGGCAGCCCGGCGCCGCTGAGCGATCCCA < 41bp 0.49144549388392 0.776470269550534 0.21079761 0.755086 prediction 0.552940539101068 Functional Gain - FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65154540 chr11:65154544 nonsynonymous SNV 0.226 2 25 hm5C_associated_SNPs_104200 0 0 1 0 2 FRMD8 chr11:65154508 3'AG 65154508 Downstream 37bp
chr11 65154544 65154544 1 + C G LUAD 65154540 + 65154520 65154560 41 GAAGGCAGTGCCGGGCAGCCCGGCCCCGCTGAGCGATCCCA GAAGGCAGTGCCGGGCAGCCCGGCGCCGCTGAGCGATCCCA < 41bp 0.49144549388392 0.776470269550534 0.21079761 0.755086 prediction 0.552940539101068 Functional Gain - FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65154540 chr11:65154544 nonsynonymous SNV 0.226 2 25 hm5C_associated_SNPs_104200 0 0 1 0 2 FRMD8 chr11:65154592 5'GT 65154592 Upstream 49bp
chr12 85677393 85677393 1 + C G HNSC 85677392 + 85677372 85677412 41 AGAAGGACAGCCCCTTCACACCGAACTGAATAGAGCTATGG AGAAGGACAGCCCCTTCACACGGAACTGAATAGAGCTATGG < 41bp 0.548765275462064 0.825201664304141 0.105116725 0.45653883 prediction 0.552872777684153 Functional Gain - ALX1 ENSG00000180318 CDS Human protein_coding chr12:85677392 chr12:85677393 synonymous SNV . 0 22 hm5C_associated_SNPs_104204 0 0 1 0 1 ALX1 chr12:85677350 3'AG 85677350 Downstream 44bp
chr4 2916685 2916685 1 + C A COAD 2916681 + 2916661 2916701 41 CCACGTCATTGTGAGCACCACGGGCCCCAACCCCTTCACCA CCACGTCATTGTGAGCACCACGGGACCCAACCCCTTCACCA < 41bp 0.405888772514239 0.776429942013903 0.4217744 0.57590336 prediction 0.552859884027807 Functional Gain - ADD1 ENSG00000087274 CDS Human protein_coding chr4:2916681 chr4:2916685 synonymous SNV . 0 25 hm5C_associated_SNPs_104205 0 0 1 0 2 ADD1 chr4:2916611 3'AG 2916611 Downstream 75bp
chr4 2916685 2916685 1 + C A COAD 2916681 + 2916661 2916701 41 CCACGTCATTGTGAGCACCACGGGCCCCAACCCCTTCACCA CCACGTCATTGTGAGCACCACGGGACCCAACCCCTTCACCA < 41bp 0.405888772514239 0.776429942013903 0.4217744 0.57590336 prediction 0.552859884027807 Functional Gain - ADD1 ENSG00000087274 CDS Human protein_coding chr4:2916681 chr4:2916685 synonymous SNV . 0 25 hm5C_associated_SNPs_104205 0 0 1 0 2 ADD1 chr4:2916767 5'GT 2916767 Upstream 83bp
chr4 134084187 134084187 1 + T A STAD 134084183 + 134084163 134084203 41 ATGTAAAGCTCTGGGCCACTCAGATCGGTGCTGGATGCCTT ATGTAAAGCTCTGGGCCACTCAGAACGGTGCTGGATGCCTT < 41bp 0.467122175953389 0.77642970493269 0.06274158 0.17481369 prediction 0.55285940986538 Functional Gain - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134084183 chr4:134084187 nonsynonymous SNV 0.924 1 25 hm5C_associated_SNPs_104206 0 0 0 0 1 PCDH10 chr4:134084132 3'AG 134084132 Downstream 56bp
chrX 128927005 128927005 1 + T G HNSC 128927002 + 128926982 128927022 41 CCTGCTCAATGGCTACCAGACACTGGAAGACTTCAAAGAGC CCTGCTCAATGGCTACCAGACACGGGAAGACTTCAAAGAGC < 41bp 0.382949793477781 0.776387876060635 0.074928224 0.11528754 prediction 0.55277575212127 Functional Gain - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128927002 chrX:128927005 nonsynonymous SNV 0.965 5 24 hm5C_associated_SNPs_104209 0 0 0 0 1 SASH3 chrX:128926965 3'AG 128926965 Downstream 41bp
chr1 156703828 156703828 1 + C A UCEC 156703824 + 156703804 156703844 41 GTCCAAACCAGCCCTCGTCACTCCCCACACCACGTGGTTAG GTCCAAACCAGCCCTCGTCACTCCACACACCACGTGGTTAG < 41bp 0.352946605893675 0.776379266229466 0.12633434 0.9443478 prediction 0.552758532458932 Functional Gain - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156703824 chr1:156703828 nonsynonymous SNV 0.385 4 25 hm5C_associated_SNPs_104211 0 0 1 0 1 RRNAD1 chr1:156703801 3'AG 156703801 Downstream 28bp
chr1 150121929 150121929 1 + C G rs76413654 150121928 + 150121908 150121948 41 CCGGAGCGAGGGTCCCTGCCCCCTGGGGAGCGGTCTCCAGC CCGGAGCGAGGGTCCCTGCCCGCTGGGGAGCGGTCTCCAGC < 41bp 0.518303353791472 0.794648046894106 0.31560683 0.5857567 prediction 0.552689386205267 Functional Gain - PLEKHO1 ENSG00000023902 UTR5 Human protein_coding chr1:150121928 chr1:150121929 . . 0 22 hm5C_associated_SNPs_104215 0 0 0 0 1 PLEKHO1 chr1:150121976 5'GT 150121976 Upstream 48bp
chr19 35775917 35775917 1 + C A UCEC 35775913 + 35775893 35775933 41 TCTGCTGCGGCTGCTGTCATCGATCAAAGTGTGGGATGTGC TCTGCTGCGGCTGCTGTCATCGATAAAAGTGTGGGATGTGC < 41bp 0.386689977225346 0.776331711099925 0.14624473 0.31650776 prediction 0.55266342219985 Functional Gain - HAMP ENSG00000105697 CDS Human protein_coding chr19:35775913 chr19:35775917 stopgain 0.001 0 25 hm5C_associated_SNPs_104216 0 0 1 0 1 HAMP chr19:35775841 3'AG 35775841 Downstream 77bp
chr20 1108109 1108109 1 + T C GBM 1108107 + 1108087 1108127 41 GTGGCAGACTTGACCCTGAACTTGGATGATTATATCGATGC GTGGCAGACTTGACCCTGAACTCGGATGATTATATCGATGC < 41bp 0.50878418115867 0.78505712499135 0.051392257 0.08347952 prediction 0.55254588766536 Functional Gain - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1108107 chr20:1108109 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_104225 0 0 1 0 2 PSMF1 chr20:1108069 3'AG 1108069 Downstream 41bp
chr20 1108109 1108109 1 + T C GBM 1108107 + 1108087 1108127 41 GTGGCAGACTTGACCCTGAACTTGGATGATTATATCGATGC GTGGCAGACTTGACCCTGAACTCGGATGATTATATCGATGC < 41bp 0.50878418115867 0.78505712499135 0.051392257 0.08347952 prediction 0.55254588766536 Functional Gain - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1108107 chr20:1108109 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_104225 0 0 1 0 2 PSMF1 chr20:1108151 5'GT 1108151 Upstream 43bp
chr10 75676767 75676767 1 + T A rs145634997 75676763 + 75676743 75676783 41 CTTAGCCAATGTGGGAGCAGCGGTTTGGGGAGCAGAGACAC CTTAGCCAATGTGGGAGCAGCGGTATGGGGAGCAGAGACAC < 41bp 0.486155880812688 0.776237119094833 0.9081213 0.8960526 prediction 0.552474238189667 Functional Gain - PLAU ENSG00000122861 UTR3 Human protein_coding chr10:75676763 chr10:75676767 . . 0 25 hm5C_associated_SNPs_104228 1 0 0 0 1 PLAU chr10:75676763 3'AG 75676763 Downstream 5bp
chr12 107155035 107155035 1 + C A LGG 107155031 + 107155011 107155051 41 TGTTTGATGAGCAGTACTCCCAGACTGCATCCTACCCCAGT TGTTTGATGAGCAGTACTCCCAGAATGCATCCTACCCCAGT < 41bp 0.38746568566099 0.776233985790463 0.28527635 0.59489965 prediction 0.552467971580926 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107155031 chr12:107155035 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_104229 0 0 0 0 1 RFX4 chr12:107154975 3'AG 107154975 Downstream 61bp
chr17 38133100 38133100 1 + T A COAD 38133096 + 38133076 38133116 41 GCACGATGGAACAGAACTTCCTGCTGGATAAAGAGGGTGTT GCACGATGGAACAGAACTTCCTGCAGGATAAAGAGGGTGTT < 41bp 0.561301459056338 0.837516249877895 0.14363915 0.20623475 prediction 0.552429581643114 Functional Gain - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38133096 chr17:38133100 nonsynonymous SNV 0.811 0 25 hm5C_associated_SNPs_104231 0 0 0 0 1 GSDMA chr17:38133069 3'AG 38133069 Downstream 32bp
chr9 133944379 133944379 1 + C A UCEC 133944375 + 133944355 133944395 41 CACCTGCCGCCCAGGTGTCACAGGCCAGGCCTGTGACAGGT CACCTGCCGCCCAGGTGTCACAGGACAGGCCTGTGACAGGT < 41bp 0.373255837231845 0.776204188633154 0.37138072 0.39605728 prediction 0.552408377266307 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133944375 chr9:133944379 synonymous SNV . 0 25 hm5C_associated_SNPs_104232 0 0 0 0 2 LAMC3 chr9:133944295 3'AG 133944295 Downstream 85bp
chr9 133944379 133944379 1 + C A UCEC 133944375 + 133944355 133944395 41 CACCTGCCGCCCAGGTGTCACAGGCCAGGCCTGTGACAGGT CACCTGCCGCCCAGGTGTCACAGGACAGGCCTGTGACAGGT < 41bp 0.373255837231845 0.776204188633154 0.37138072 0.39605728 prediction 0.552408377266307 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133944375 chr9:133944379 synonymous SNV . 0 25 hm5C_associated_SNPs_104232 0 0 0 0 2 LAMC3 chr9:133944437 5'GT 133944437 Upstream 59bp
chr17 76200752 76200752 1 + C A UCEC 76200748 + 76200728 76200768 41 TCTCTGCAGTAAGGATGAGTCTGCCTTCATGGTCCACCCGC TCTCTGCAGTAAGGATGAGTCTGCATTCATGGTCCACCCGC < 41bp 0.639915701480315 0.916118490928561 0.13996887 0.5103539 prediction 0.552405578896494 Functional Gain - AFMID ENSG00000183077 CDS Human protein_coding chr17:76200748 chr17:76200752 synonymous SNV . 0 25 hm5C_associated_SNPs_104233 0 0 1 0 2 AFMID chr17:76200737 3'AG 76200737 Downstream 16bp
chr17 76200752 76200752 1 + C A UCEC 76200748 + 76200728 76200768 41 TCTCTGCAGTAAGGATGAGTCTGCCTTCATGGTCCACCCGC TCTCTGCAGTAAGGATGAGTCTGCATTCATGGTCCACCCGC < 41bp 0.639915701480315 0.916118490928561 0.13996887 0.5103539 prediction 0.552405578896494 Functional Gain - AFMID ENSG00000183077 CDS Human protein_coding chr17:76200748 chr17:76200752 synonymous SNV . 0 25 hm5C_associated_SNPs_104233 0 0 1 0 2 AFMID chr17:76200822 5'GT 76200822 Upstream 71bp
chr10 73990180 73990180 1 + C A UCEC 73990176 + 73990156 73990196 41 TTTAGCTATCAAGTGGCATCCACGCTTAAACAGGTGAAACA TTTAGCTATCAAGTGGCATCCACGATTAAACAGGTGAAACA < 41bp 0.38244322084707 0.776183101601943 0.22735542 0.17516556 prediction 0.552366203203886 Functional Gain - ANAPC16 ENSG00000166295 CDS Human protein_coding chr10:73990176 chr10:73990180 nonsynonymous SNV 0.987 3 25 hm5C_associated_SNPs_104234 0 0 1 0 2 ANAPC16 chr10:73990124 3'AG 73990124 Downstream 57bp
chr10 73990180 73990180 1 + C A UCEC 73990176 + 73990156 73990196 41 TTTAGCTATCAAGTGGCATCCACGCTTAAACAGGTGAAACA TTTAGCTATCAAGTGGCATCCACGATTAAACAGGTGAAACA < 41bp 0.38244322084707 0.776183101601943 0.22735542 0.17516556 prediction 0.552366203203886 Functional Gain - ANAPC16 ENSG00000166295 CDS Human protein_coding chr10:73990176 chr10:73990180 nonsynonymous SNV 0.987 3 25 hm5C_associated_SNPs_104234 0 0 1 0 2 ANAPC16 chr10:73990198 5'GT 73990198 Upstream 19bp
chr19 55048342 55048342 1 + C A LGG 55048338 + 55048318 55048358 41 CTATGGTTCCTTCAATGACTCTCCCTATAAGCCCCCAGTGA CTATGGTTCCTTCAATGACTCTCCATATAAGCCCCCAGTGA < 41bp 0.360995606234763 0.776162664028856 0.1451959 0.9526715 prediction 0.552325328057713 Functional Gain - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55048338 chr19:55048342 synonymous SNV . 0 25 hm5C_associated_SNPs_104235 0 0 0 0 1 KIR3DX1 chr19:55048381 5'GT 55048381 Upstream 40bp
chr9 130865985 130865985 1 + C G HNSC 130865981 + 130865961 130866001 41 TCTTTGATGTGGGTGAGAATCTAACGGTCCCGGATGAGTTC TCTTTGATGTGGGTGAGAATCTAAGGGTCCCGGATGAGTTC < 41bp 0.491233808818979 0.776148566468913 0.030295968 0.0911302 prediction 0.552297132937827 Functional Gain - SLC25A25 ENSG00000148339 CDS Human protein_coding chr9:130865981 chr9:130865985 nonsynonymous SNV 0.365 3 25 hm5C_associated_SNPs_104237 0 0 1 0 1 SLC25A25 chr9:130865960 3'AG 130865960 Downstream 26bp
chr9 35675543 35675543 1 + C G BRCA 35675542 + 35675522 35675562 41 TTCATTTATACAGGGGATGACCAGAGTCATTGGCGCTATGG TTCATTTATACAGGGGATGACGAGAGTCATTGGCGCTATGG < 41bp 0.552474910411084 0.828614229881618 0.72888094 0.8993104 prediction 0.552278638941067 Functional Gain - CA9 ENSG00000107159 CDS Human protein_coding chr9:35675542 chr9:35675543 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_104239 0 0 0 0 2 CA9 chr9:35675535 3'AG 35675535 Downstream 9bp
chr9 35675543 35675543 1 + C G BRCA 35675542 + 35675522 35675562 41 TTCATTTATACAGGGGATGACCAGAGTCATTGGCGCTATGG TTCATTTATACAGGGGATGACGAGAGTCATTGGCGCTATGG < 41bp 0.552474910411084 0.828614229881618 0.72888094 0.8993104 prediction 0.552278638941067 Functional Gain - CA9 ENSG00000107159 CDS Human protein_coding chr9:35675542 chr9:35675543 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_104239 0 0 0 0 2 CA9 chr9:35675564 5'GT 35675564 Upstream 22bp
chr15 51201110 51201110 1 + C A UCEC 51201106 + 51201086 51201126 41 CAGCCTTGTCCGCGGCATCACAGCCCTCACCTCCAAGCACG CAGCCTTGTCCGCGGCATCACAGCACTCACCTCCAAGCACG < 41bp 0.559739755130851 0.835878722473795 0.087890446 0.1473243 prediction 0.552277934685887 Functional Gain - AP4E1 ENSG00000081014 CDS Human protein_coding chr15:51201106 chr15:51201110 synonymous SNV . 0 25 hm5C_associated_SNPs_104240 0 0 1 3 1 AP4E1 chr15:51201125 5'GT 51201125 Upstream 16bp
chr12 121132786 121132786 1 + T G LUAD 121132783 + 121132763 121132803 41 TGTCCACCTTCACAGGGAAACTCTACATTGAGTTTGTCAAG TGTCCACCTTCACAGGGAAACTCGACATTGAGTTTGTCAAG < 41bp 0.403031269511876 0.776129714990824 0.95533544 0.41376197 prediction 0.552259429981648 Functional Gain - MLEC ENSG00000110917 CDS Human protein_coding chr12:121132783 chr12:121132786 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_104242 0 0 1 0 1 MLEC chr12:121132803 5'GT 121132803 Upstream 18bp
chr17 47299571 47299571 1 + C A UCEC 47299567 + 47299547 47299587 41 TGATGAGCCCAGCTGGGTGCCTGCCTCATACTTGGAGAAAG TGATGAGCCCAGCTGGGTGCCTGCATCATACTTGGAGAAAG < 41bp 0.354275415681224 0.776128885687451 0.15460584 0.23169321 prediction 0.552257771374902 Functional Gain - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47299567 chr17:47299571 synonymous SNV . 0 25 hm5C_associated_SNPs_104243 0 0 0 0 1 ABI3 chr17:47299587 5'GT 47299587 Upstream 17bp
chr7 100212803 100212803 1 + C G OV 100212802 + 100212782 100212822 41 CACCATGGTGTTCCTCCGGACCTGAGCTCCGTGCTCAACCC CACCATGGTGTTCCTCCGGACGTGAGCTCCGTGCTCAACCC < 41bp 0.468079111598631 0.776127317319282 0.13069484 0.21191123 prediction 0.552254634638564 Functional Gain - MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100212802 chr7:100212803 synonymous SNV . 0 22 hm5C_associated_SNPs_104244 0 0 1 0 1 MOSPD3 chr7:100212775 3'AG 100212775 Downstream 29bp
chr8 67976657 67976657 1 + C G UCEC 67976656 + 67976636 67976676 41 GCTGTTCCCGCTCCAGGTGGCCGCTGTAACCTCTTCGGTCC GCTGTTCCCGCTCCAGGTGGCGGCTGTAACCTCTTCGGTCC < 41bp 0.520538821232016 0.796650716377658 0.2714082 0.37354827 prediction 0.552223790291284 Functional Gain - CSPP1 ENSG00000104218 CDS Human protein_coding chr8:67976656 chr8:67976657 synonymous SNV . 0 22 hm5C_associated_SNPs_104248 0 0 0 0 1 CSPP1 chr8:67976731 5'GT 67976731 Upstream 75bp
chr12 53454545 53454545 1 + C G rs142497165 53454541 + 53454521 53454561 41 AGGCCTTGCCCCCTGTTTCCCAGGCAGGCACCGGAAAGGCC AGGCCTTGCCCCCTGTTTCCCAGGGAGGCACCGGAAAGGCC < 41bp 0.493781623842974 0.776077397699821 0.6464389 0.90564394 prediction 0.552154795399641 Functional Gain - TNS2 ENSG00000111077;ENSG00000111077 exonic;splicing Human protein_coding chr12:53454541 chr12:53454545 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_104249 0 0 0 0 1 TNS2 chr12:53454459 3'AG 53454459 Downstream 87bp
chr8 7787954 7787954 1 + C A rs540627042 7787950 + 7787930 7787970 41 TCTTGGATGTCTGATACAAACAGCCTCAGGTAAGCTACAAG TCTTGGATGTCTGATACAAACAGCATCAGGTAAGCTACAAG < 41bp 0.488154180923005 0.776013253786397 0.17760786 0.10021809 prediction 0.552026507572794 Functional Gain - ZNF705B ENSG00000215356 UTR5 Human protein_coding chr8:7787950 chr8:7787954 . . 0 25 hm5C_associated_SNPs_104254 0 0 0 0 1 ZNF705B chr8:7787958 5'GT 7787958 Upstream 5bp
chr3 30691804 30691804 1 + T C COAD 30691802 + 30691782 30691822 41 TAACACTAGAGACAGTTTGCCATGACCCCAAGCTCCCCTAC TAACACTAGAGACAGTTTGCCACGACCCCAAGCTCCCCTAC < 41bp 0.504798492224571 0.780779690472029 0.07843825 0.08773637 prediction 0.551962396494917 Functional Gain - TGFBR2 ENSG00000163513 CDS Human protein_coding chr3:30691802 chr3:30691804 synonymous SNV . 0 23 hm5C_associated_SNPs_104258 0 0 0 0 2 TGFBR2 chr3:30691762 3'AG 30691762 Downstream 43bp
chr3 30691804 30691804 1 + T C COAD 30691802 + 30691782 30691822 41 TAACACTAGAGACAGTTTGCCATGACCCCAAGCTCCCCTAC TAACACTAGAGACAGTTTGCCACGACCCCAAGCTCCCCTAC < 41bp 0.504798492224571 0.780779690472029 0.07843825 0.08773637 prediction 0.551962396494917 Functional Gain - TGFBR2 ENSG00000163513 CDS Human protein_coding chr3:30691802 chr3:30691804 synonymous SNV . 0 23 hm5C_associated_SNPs_104258 0 0 0 0 2 TGFBR2 chr3:30691765 3'AG 30691765 Downstream 40bp
chr14 23847948 23847948 1 + C A LUAD 23847944 + 23847924 23847964 41 TCTCCCACTCAGCAAAGGTCCAGCCCCAGCCCTGGCCTGGC TCTCCCACTCAGCAAAGGTCCAGCACCAGCCCTGGCCTGGC < 41bp 0.375604059986107 0.775968655204078 0.060848176 0.1292254 prediction 0.551937310408155 Functional Gain - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23847944 chr14:23847948 nonsynonymous SNV 0.004 2 25 hm5C_associated_SNPs_104260 0 0 0 0 1 CMTM5 chr14:23847878 3'AG 23847878 Downstream 71bp
chr17 60526013 60526013 1 + C G rs528434306 60526012 + 60525992 60526032 41 GATCGCCGACTGCAGGTGAACCGAGGAAAGCAACTGACAAT GATCGCCGACTGCAGGTGAACGGAGGAAAGCAACTGACAAT < 41bp 0.52932468693544 0.80527131704845 0.89179003 0.8996546 prediction 0.551893260226019 Functional Gain - METTL2A ENSG00000087995 CDS Human protein_coding chr17:60526012 chr17:60526013 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_104263 0 0 1 0 1 METTL2A chr17:60525936 3'AG 60525936 Downstream 78bp
chr19 14034176 14034176 1 + T A UCEC 14034172 + 14034152 14034192 41 CCTGCCCCTGTCAACAAGGACGACTTTGCCCTGGTCCAGCG CCTGCCCCTGTCAACAAGGACGACATTGCCCTGGTCCAGCG < 41bp 0.459330262481053 0.775934236184095 0.043626666 0.099674284 prediction 0.55186847236819 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14034172 chr19:14034176 nonsynonymous SNV 0.957 2 25 hm5C_associated_SNPs_104265 0 0 1 0 2 CC2D1A chr19:14034146 3'AG 14034146 Downstream 31bp
chr19 14034176 14034176 1 + T A UCEC 14034172 + 14034152 14034192 41 CCTGCCCCTGTCAACAAGGACGACTTTGCCCTGGTCCAGCG CCTGCCCCTGTCAACAAGGACGACATTGCCCTGGTCCAGCG < 41bp 0.459330262481053 0.775934236184095 0.043626666 0.099674284 prediction 0.55186847236819 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14034172 chr19:14034176 nonsynonymous SNV 0.957 2 25 hm5C_associated_SNPs_104265 0 0 1 0 2 CC2D1A chr19:14034268 5'GT 14034268 Upstream 93bp
chr22 24658477 24658477 1 + C G LUAD 24658473 + 24658453 24658493 41 TCACGGAAGTACAGCTTCAGCGTGCCTGCGATGGCGTTCAT TCACGGAAGTACAGCTTCAGCGTGGCTGCGATGGCGTTCAT < 41bp 0.511893380095083 0.787794270047037 0.23210987 0.51010513 prediction 0.551801779903909 Functional Gain - POM121L9P ENSG00000128262;ENSG00000225098 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:24658473 chr22:24658477 . . 0 25 hm5C_associated_SNPs_104269 0 0 0 0 1 POM121L9P chr22:24658575 5'GT 24658575 Upstream 99bp
chr19 4497986 4497986 1 + T G UCEC 4497983 + 4497963 4498003 41 AGGTGGAGCGGACCCGGAAGCGGTCCGAGGGCTTCTCGATG AGGTGGAGCGGACCCGGAAGCGGGCCGAGGGCTTCTCGATG < 41bp 0.384702249168468 0.77587830839768 0.3714679 0.90998375 prediction 0.551756616795361 Functional Gain - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4497983 chr19:4497986 nonsynonymous SNV 0.870 0 24 hm5C_associated_SNPs_104271 0 0 1 0 2 HDGFL2 chr19:4497955 3'AG 4497955 Downstream 32bp
chr19 4497986 4497986 1 + T G UCEC 4497983 + 4497963 4498003 41 AGGTGGAGCGGACCCGGAAGCGGTCCGAGGGCTTCTCGATG AGGTGGAGCGGACCCGGAAGCGGGCCGAGGGCTTCTCGATG < 41bp 0.384702249168468 0.77587830839768 0.3714679 0.90998375 prediction 0.551756616795361 Functional Gain - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4497983 chr19:4497986 nonsynonymous SNV 0.870 0 24 hm5C_associated_SNPs_104271 0 0 1 0 2 HDGFL2 chr19:4498028 5'GT 4498028 Upstream 43bp
chr17 51901021 51901021 1 - G C HNSC 51901025 - 51901005 51901045 41 GCAGACGCAGATGCGATGTTCTTGCGGGGGCTCCAGGACTG GCAGACGCAGATGCGATGTTCTTGGGGGGGCTCCAGGACTG < 41bp 0.511341205588406 0.787180093733105 0.15437329 0.3527341 prediction 0.551677776289398 Functional Gain - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51901025 chr17:51901021 synonymous SNV . 0 25 hm5C_associated_SNPs_104273 0 0 0 0 1 KIF2B chr17:51901090 3'AG 51901090 Downstream 70bp
chr4 57340534 57340534 1 + T C STAD 57340532 + 57340512 57340552 41 CAAGGCCAGCTGAACCAGGCCATGAAAATCCTACAAAAAGC CAAGGCCAGCTGAACCAGGCCACGAAAATCCTACAAAAAGC < 41bp 0.502194679638178 0.777986844649626 0.01717621 0.0066018105 prediction 0.551584330022896 Functional Gain - SRP72 ENSG00000174780 CDS Human protein_coding chr4:57340532 chr4:57340534 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_104275 0 0 1 0 2 SRP72 chr4:57340446 3'AG 57340446 Downstream 89bp
chr4 57340534 57340534 1 + T C STAD 57340532 + 57340512 57340552 41 CAAGGCCAGCTGAACCAGGCCATGAAAATCCTACAAAAAGC CAAGGCCAGCTGAACCAGGCCACGAAAATCCTACAAAAAGC < 41bp 0.502194679638178 0.777986844649626 0.01717621 0.0066018105 prediction 0.551584330022896 Functional Gain - SRP72 ENSG00000174780 CDS Human protein_coding chr4:57340532 chr4:57340534 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_104275 0 0 1 0 2 SRP72 chr4:57340557 5'GT 57340557 Upstream 24bp
chr4 8477562 8477562 1 + C G rs139858049 8477561 + 8477541 8477581 41 CACTGTGGAAGACAAAGCAACCGGAAGCGAAACAGAGACTG CACTGTGGAAGACAAAGCAACGGGAAGCGAAACAGAGACTG < 41bp 0.542305922377155 0.818084895782476 0.33367613 0.73643583 prediction 0.551557946810642 Functional Gain - TRMT44 ENSG00000155275 CDS Human protein_coding chr4:8477561 chr4:8477562 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_104278 0 0 0 0 1 TRMT44 chr4:8477499 3'AG 8477499 Downstream 64bp
chr11 64981837 64981837 1 + C A rs12420456 64981833 + 64981813 64981853 41 AGGCCCGCACTCTCCGAGACCTGGCGCAGTCCGTCTACATG AGGCCCGCACTCTCCGAGACCTGGAGCAGTCCGTCTACATG < 41bp 0.559855386617325 0.835629226940287 0.26128387 0.46285558 prediction 0.551547680645924 Functional Gain - SLC22A20 ENSG00000197847 ncRNA_exonic Human transcribed_unitary_pseudogene chr11:64981833 chr11:64981837 . . 0 25 hm5C_associated_SNPs_104279 0 0 0 0 2 SLC22A20 chr11:64981797 3'AG 64981797 Downstream 41bp
chr11 64981837 64981837 1 + C A rs12420456 64981833 + 64981813 64981853 41 AGGCCCGCACTCTCCGAGACCTGGCGCAGTCCGTCTACATG AGGCCCGCACTCTCCGAGACCTGGAGCAGTCCGTCTACATG < 41bp 0.559855386617325 0.835629226940287 0.26128387 0.46285558 prediction 0.551547680645924 Functional Gain - SLC22A20 ENSG00000197847 ncRNA_exonic Human transcribed_unitary_pseudogene chr11:64981833 chr11:64981837 . . 0 25 hm5C_associated_SNPs_104279 0 0 0 0 2 SLC22A20 chr11:64981900 5'GT 64981900 Upstream 64bp
chrX 38546900 38546900 1 + C A LUSC 38546896 + 38546876 38546916 41 CTGTCTGTCCCGGTTCATCACGGCCAATCAGTATGAGATGG CTGTCTGTCCCGGTTCATCACGGCAAATCAGTATGAGATGG < 41bp 0.640053801667103 0.915820513026313 0.5244485 0.4968378 prediction 0.55153342271842 Functional Gain - TSPAN7 ENSG00000156298;ENSG00000250349 CDS Human other chrX:38546896 chrX:38546900 synonymous SNV . 0 25 hm5C_associated_SNPs_104280 0 0 1 0 2 TSPAN7 chrX:38546853 3'AG 38546853 Downstream 48bp
chrX 38546900 38546900 1 + C A LUSC 38546896 + 38546876 38546916 41 CTGTCTGTCCCGGTTCATCACGGCCAATCAGTATGAGATGG CTGTCTGTCCCGGTTCATCACGGCAAATCAGTATGAGATGG < 41bp 0.640053801667103 0.915820513026313 0.5244485 0.4968378 prediction 0.55153342271842 Functional Gain - TSPAN7 ENSG00000156298;ENSG00000250349 CDS Human other chrX:38546896 chrX:38546900 synonymous SNV . 0 25 hm5C_associated_SNPs_104280 0 0 1 0 2 TSPAN7 chrX:38546928 5'GT 38546928 Upstream 29bp
chrX 106456221 106456221 1 + T A SARC 106456217 + 106456197 106456237 41 CTCTGGAAGCCCTCTCTAAGCTACTTAATCCTGAAGAAGAG CTCTGGAAGCCCTCTCTAAGCTACATAATCCTGAAGAAGAG < 41bp 0.571957849327574 0.847705189701915 0.01793164 0.051212758 prediction 0.551494680748682 Functional Gain - PIH1D3 ENSG00000080572 CDS Human protein_coding chrX:106456217 chrX:106456221 nonsynonymous SNV 0.393 3 25 hm5C_associated_SNPs_104283 0 0 0 0 1 PIH1D3 chrX:106456258 5'GT 106456258 Upstream 38bp
chr4 42403085 42403085 1 + C G HNSC 42403084 + 42403064 42403104 41 ATCTTCATTGCGTTCATCATCCTGGGCTCTGTAGTGGCTAT ATCTTCATTGCGTTCATCATCGTGGGCTCTGTAGTGGCTAT < 41bp 0.478023116507522 0.775745816193466 0.784516 0.9251313 prediction 0.551491632386933 Functional Gain - SHISA3 ENSG00000178343 CDS Human protein_coding chr4:42403084 chr4:42403085 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_104284 0 0 1 0 1 SHISA3 chr4:42403029 3'AG 42403029 Downstream 57bp
chr17 40818390 40818390 1 + T G PRAD 40818388 + 40818368 40818408 41 GAACGGAAGTTGGCCAACTTCATCCCGTGGGGCCCCGCCAG GAACGGAAGTTGGCCAACTTCAGCCCGTGGGGCCCCGCCAG < 41bp 0.438147330226956 0.775744648411741 0.26341712 0.5059795 prediction 0.551489296823481 Functional Gain - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40818388 chr17:40818390 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_104285 0 0 0 0 1 TUBG2 chr17:40818341 3'AG 40818341 Downstream 50bp
chr11 75438611 75438611 1 + T A LUAD 75438607 + 75438587 75438627 41 AGGCTTCTCTTCGATCTTCCCCGGTATCCGCCCCCATCTGA AGGCTTCTCTTCGATCTTCCCCGGAATCCGCCCCCATCTGA < 41bp 0.5643322506586 0.840024814236233 0.18451712 0.56572866 prediction 0.551385127155267 Functional Gain - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75438607 chr11:75438611 synonymous SNV . 0 25 hm5C_associated_SNPs_104290 0 0 0 0 1 MOGAT2 chr11:75438684 5'GT 75438684 Upstream 74bp
chr16 55703603 55703603 1 + T C UCEC 55703601 + 55703581 55703621 41 GTTTGGAAAATCTGCCCATTCTTCAAAGGTAAAGAAGGGGT GTTTGGAAAATCTGCCCATTCTCCAAAGGTAAAGAAGGGGT < 41bp 0.495876149328029 0.775667369672267 0.13869336 0.95549494 prediction 0.551334739344533 Functional Gain - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55703601 chr16:55703603 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_104291 0 0 0 0 1 SLC6A2 chr16:55703608 5'GT 55703608 Upstream 6bp
chr15 85438181 85438181 1 + C G rs144931395 85438177 + 85438157 85438197 41 GTCTCATCCCCCAGGGCTCTCTGCCTTCCTGCTGGTGGCCT GTCTCATCCCCCAGGGCTCTCTGCGTTCCTGCTGGTGGCCT < 41bp 0.482061549489811 0.775659054294979 0.114307016 0.28920847 prediction 0.551318108589958 Functional Gain - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85438177 chr15:85438181 synonymous SNV . 0 25 hm5C_associated_SNPs_104293 0 0 1 0 1 SLC28A1 chr15:85438171 3'AG 85438171 Downstream 11bp
chrX 57405163 57405163 1 + T C rs4826543 57405161 + 57405141 57405181 41 TGTGCACTGGTCCTATGTGCCGTTATGCTGAAGACCTGGCC TGTGCACTGGTCCTATGTGCCGCTATGCTGAAGACCTGGCC < 41bp 0.497433400358187 0.775629151665165 0.036847085 0.03652647 prediction 0.551258303330329 Functional Gain - FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57405161 chrX:57405163 synonymous SNV . 0 23 hm5C_associated_SNPs_104294 0 0 0 0 2 FAAH2 chrX:57405084 3'AG 57405084 Downstream 80bp
chrX 57405163 57405163 1 + T C rs4826543 57405161 + 57405141 57405181 41 TGTGCACTGGTCCTATGTGCCGTTATGCTGAAGACCTGGCC TGTGCACTGGTCCTATGTGCCGCTATGCTGAAGACCTGGCC < 41bp 0.497433400358187 0.775629151665165 0.036847085 0.03652647 prediction 0.551258303330329 Functional Gain - FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57405161 chrX:57405163 synonymous SNV . 0 23 hm5C_associated_SNPs_104294 0 0 0 0 2 FAAH2 chrX:57405219 5'GT 57405219 Upstream 57bp
chr2 96933131 96933131 1 + C G OV 96933130 + 96933110 96933150 41 TGCGGAAGGTAGCCTGGTCCCCCTGCGGTAATTACCTGGCC TGCGGAAGGTAGCCTGGTCCCGCTGCGGTAATTACCTGGCC < 41bp 0.472337592945242 0.775613678330145 0.23726064 0.5802404 prediction 0.55122735666029 Functional Gain - CIAO1 ENSG00000144021 CDS Human protein_coding chr2:96933130 chr2:96933131 nonsynonymous SNV 0.948 4 22 hm5C_associated_SNPs_104297 0 0 1 0 2 CIAO1 chr2:96933059 3'AG 96933059 Downstream 73bp
chr2 96933131 96933131 1 + C G OV 96933130 + 96933110 96933150 41 TGCGGAAGGTAGCCTGGTCCCCCTGCGGTAATTACCTGGCC TGCGGAAGGTAGCCTGGTCCCGCTGCGGTAATTACCTGGCC < 41bp 0.472337592945242 0.775613678330145 0.23726064 0.5802404 prediction 0.55122735666029 Functional Gain - CIAO1 ENSG00000144021 CDS Human protein_coding chr2:96933130 chr2:96933131 nonsynonymous SNV 0.948 4 22 hm5C_associated_SNPs_104297 0 0 1 0 2 CIAO1 chr2:96933207 5'GT 96933207 Upstream 77bp
chr17 42254298 42254298 1 + C G rs141590219 42254297 + 42254277 42254317 41 GAACACGGCGTGCGCTGGGGCCGAGGGCCCAGGTAGCTGCA GAACACGGCGTGCGCTGGGGCGGAGGGCCCAGGTAGCTGCA < 41bp 0.471868647713386 0.775604040946781 0.54843885 0.90007985 prediction 0.551208081893563 Functional Gain - ASB16 ENSG00000161664 CDS Human protein_coding chr17:42254297 chr17:42254298 synonymous SNV . 0 22 hm5C_associated_SNPs_104298 0 0 0 0 1 ASB16 chr17:42254308 5'GT 42254308 Upstream 11bp
chr20 61461738 61461738 1 + C G rs557569181 61461737 + 61461717 61461757 41 CCTCGGCCCACAAGGCCCTCCCGGAGCCCCTGGTGTCCGAG CCTCGGCCCACAAGGCCCTCCGGGAGCCCCTGGTGTCCGAG < 41bp 0.559755372727275 0.835342047338147 0.92136025 0.9243486 prediction 0.551173349221744 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61461737 chr20:61461738 synonymous SNV . 0 22 hm5C_associated_SNPs_104301 0 0 1 0 2 COL9A3 chr20:61461712 3'AG 61461712 Downstream 27bp
chr20 61461738 61461738 1 + C G rs557569181 61461737 + 61461717 61461757 41 CCTCGGCCCACAAGGCCCTCCCGGAGCCCCTGGTGTCCGAG CCTCGGCCCACAAGGCCCTCCGGGAGCCCCTGGTGTCCGAG < 41bp 0.559755372727275 0.835342047338147 0.92136025 0.9243486 prediction 0.551173349221744 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61461737 chr20:61461738 synonymous SNV . 0 22 hm5C_associated_SNPs_104301 0 0 1 0 2 COL9A3 chr20:61461765 5'GT 61461765 Upstream 28bp
chr16 84225198 84225198 1 + C G rs529653331 84225194 + 84225174 84225214 41 CCAGCCAGGCCGTGTCCTTGCTCACGGAGTACGCGGCCAGC CCAGCCAGGCCGTGTCCTTGCTCAGGGAGTACGCGGCCAGC < 41bp 0.50877593367036 0.784334079102117 0.039968878 0.052339286 prediction 0.551116290863513 Functional Gain - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84225194 chr16:84225198 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_104306 0 0 0 0 1 ADAD2 chr16:84225254 5'GT 84225254 Upstream 57bp
chr2 71891424 71891424 1 + C A UCEC 71891420 + 71891400 71891440 41 TGTTCGAGCTGACCTGCACTCTGCCTCTGGAGAAGGACCTA TGTTCGAGCTGACCTGCACTCTGCATCTGGAGAAGGACCTA < 41bp 0.416523102273144 0.775557400846596 0.15579528 0.26180166 prediction 0.551114801693191 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71891420 chr2:71891424 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_104307 0 0 0 0 1 DYSF chr2:71891398 3'AG 71891398 Downstream 27bp
chr7 30634661 30634661 1 + C A rs1049402 30634657 + 30634637 30634677 41 CGGTCCCTCAGCGCGGCCTCCTGCCCCCCGATCTCCTTGCC CGGTCCCTCAGCGCGGCCTCCTGCACCCCGATCTCCTTGCC < 41bp 0.628048206205945 0.903571338678933 0.46837783 0.26266056 prediction 0.551046264945975 Functional Gain - GARS ENSG00000106105 CDS Human protein_coding chr7:30634657 chr7:30634661 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_104311 0 0 1 0 1 GARS chr7:30634759 5'GT 30634759 Upstream 99bp
chr4 111398156 111398156 1 + C A LGG 111398152 + 111398132 111398172 41 CTGACCATGGAGTTCGCCGGCTGGCTGAACGGCTCCCTCGT CTGACCATGGAGTTCGCCGGCTGGATGAACGGCTCCCTCGT < 41bp 0.632776667997679 0.908270205302448 0.36873162 0.71814454 prediction 0.550987074609536 Functional Gain - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111398152 chr4:111398156 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_104314 0 0 0 0 1 ENPEP chr4:111398214 5'GT 111398214 Upstream 59bp
chr16 31422791 31422791 1 + C G LUSC 31422787 + 31422767 31422807 41 CAGGAGAACCGGGGTGCTGTCTACCTGTTTCACGGAGCCTC CAGGAGAACCGGGGTGCTGTCTACGTGTTTCACGGAGCCTC < 41bp 0.517198965390263 0.792658725265829 0.2875697 0.7251073 prediction 0.550919519751133 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422787 chr16:31422791 nonsynonymous SNV 0.858 0 25 hm5C_associated_SNPs_104317 0 0 0 0 1 ITGAD chr16:31422838 5'GT 31422838 Upstream 48bp
chr2 69002401 69002401 1 + C A LUAD 69002397 + 69002377 69002417 41 GCGAGCAGATGGCTGCCTTCCATCCATCGTCCACCCCCAAC GCGAGCAGATGGCTGCCTTCCATCAATCGTCCACCCCCAAC < 41bp 0.359996806159031 0.775457682987441 0.02339974 0.008023471 prediction 0.550915365974881 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69002397 chr2:69002401 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_104319 0 0 0 0 2 ARHGAP25 chr2:69002353 3'AG 69002353 Downstream 49bp
chr2 69002401 69002401 1 + C A LUAD 69002397 + 69002377 69002417 41 GCGAGCAGATGGCTGCCTTCCATCCATCGTCCACCCCCAAC GCGAGCAGATGGCTGCCTTCCATCAATCGTCCACCCCCAAC < 41bp 0.359996806159031 0.775457682987441 0.02339974 0.008023471 prediction 0.550915365974881 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69002397 chr2:69002401 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_104319 0 0 0 0 2 ARHGAP25 chr2:69002488 5'GT 69002488 Upstream 88bp
chr17 18140250 18140250 1 + C G COAD 18140246 + 18140226 18140266 41 GATGGTGGTGGCTGGCACTGCAGGCCAGGTAGGGCTGGGTG GATGGTGGTGGCTGGCACTGCAGGGCAGGTAGGGCTGGGTG < 41bp 0.491055893768079 0.775457495144725 0.7216588 0.8617784 prediction 0.55091499028945 Functional Gain - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18140246 chr17:18140250 synonymous SNV . 0 25 hm5C_associated_SNPs_104320 0 0 1 0 1 LLGL1 chr17:18140253 5'GT 18140253 Upstream 4bp
chr11 59807962 59807962 1 + T G SKCM 59807959 + 59807939 59807979 41 TTAGAAGTCTTGATGCTCCTCGCTGTCTTGATTTGGACCGG TTAGAAGTCTTGATGCTCCTCGCGGTCTTGATTTGGACCGG < 41bp 0.613992215625898 0.889433101230723 0.22536409 0.85797966 prediction 0.550881771209649 Functional Gain - OOSP2 ENSG00000149507 CDS Human protein_coding chr11:59807959 chr11:59807962 synonymous SNV . 0 24 hm5C_associated_SNPs_104321 0 0 0 0 1 OOSP2 chr11:59807996 5'GT 59807996 Upstream 35bp
chr1 177242663 177242663 1 + T A LUAD 177242659 + 177242639 177242679 41 ACCGGTCCTCTGGGCTGCAGCAACTATGACAATCTGGACTC ACCGGTCCTCTGGGCTGCAGCAACAATGACAATCTGGACTC < 41bp 0.572400930851318 0.847831586825404 0.16177264 0.080245495 prediction 0.550861311948172 Functional Gain - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177242659 chr1:177242663 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_104324 0 0 0 0 2 BRINP2 chr1:177242624 3'AG 177242624 Downstream 40bp
chr1 177242663 177242663 1 + T A LUAD 177242659 + 177242639 177242679 41 ACCGGTCCTCTGGGCTGCAGCAACTATGACAATCTGGACTC ACCGGTCCTCTGGGCTGCAGCAACAATGACAATCTGGACTC < 41bp 0.572400930851318 0.847831586825404 0.16177264 0.080245495 prediction 0.550861311948172 Functional Gain - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177242659 chr1:177242663 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_104324 0 0 0 0 2 BRINP2 chr1:177242729 5'GT 177242729 Upstream 67bp
chr19 50902659 50902659 1 + C G rs2228665 50902655 + 50902635 50902675 41 CCCACCATCAGCCATAGATCCTCGCTGGCTTCGGCCCACAC CCCACCATCAGCCATAGATCCTCGGTGGCTTCGGCCCACAC < 41bp 0.496671095537893 0.775379468148798 0.709865 0.8717084 prediction 0.550758936297596 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50902655 chr19:50902659 synonymous SNV . 0 25 hm5C_associated_SNPs_104327 2 0 1 0 2 POLD1 chr19:50902628 3'AG 50902628 Downstream 32bp
chr19 50902659 50902659 1 + C G rs2228665 50902655 + 50902635 50902675 41 CCCACCATCAGCCATAGATCCTCGCTGGCTTCGGCCCACAC CCCACCATCAGCCATAGATCCTCGGTGGCTTCGGCCCACAC < 41bp 0.496671095537893 0.775379468148798 0.709865 0.8717084 prediction 0.550758936297596 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50902655 chr19:50902659 synonymous SNV . 0 25 hm5C_associated_SNPs_104327 2 0 1 0 2 POLD1 chr19:50902741 5'GT 50902741 Upstream 83bp
chr19 45411116 45411116 1 + T G LGG 45411113 + 45411093 45411133 41 CGGCCAGCGCTGGGAACTGGCACTGGGTCGCTTTTGGGATT CGGCCAGCGCTGGGAACTGGCACGGGGTCGCTTTTGGGATT < 41bp 0.629809040419263 0.905172592161272 0.34980902 0.9200759 prediction 0.550727103484018 Functional Gain - APOE ENSG00000130203 CDS Human protein_coding chr19:45411113 chr19:45411116 nonsynonymous SNV 0.008 2 24 hm5C_associated_SNPs_104330 0 0 1 0 2 APOE chr19:45411017 3'AG 45411017 Downstream 100bp
chr19 45411116 45411116 1 + T G LGG 45411113 + 45411093 45411133 41 CGGCCAGCGCTGGGAACTGGCACTGGGTCGCTTTTGGGATT CGGCCAGCGCTGGGAACTGGCACGGGGTCGCTTTTGGGATT < 41bp 0.629809040419263 0.905172592161272 0.34980902 0.9200759 prediction 0.550727103484018 Functional Gain - APOE ENSG00000130203 CDS Human protein_coding chr19:45411113 chr19:45411116 nonsynonymous SNV 0.008 2 24 hm5C_associated_SNPs_104330 0 0 1 0 2 APOE chr19:45411209 5'GT 45411209 Upstream 94bp
chr6 7861712 7861712 1 + C A LUAD 7861708 + 7861688 7861728 41 TCTGACCTGTTTTTGTTGGACACCCGTGTAGTATGGGCCTC TCTGACCTGTTTTTGTTGGACACCAGTGTAGTATGGGCCTC < 41bp 0.356405054590416 0.775350065089033 0.14568073 0.3514955 prediction 0.550700130178067 Functional Gain - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7861708 chr6:7861712 nonsynonymous SNV 0.847 3 25 hm5C_associated_SNPs_104332 0 0 0 0 1 BMP6 chr6:7861684 3'AG 7861684 Downstream 29bp
chr14 68008639 68008639 1 + C A COAD 68008635 + 68008615 68008655 41 AGCGTAGACTGGCAGAAACGCTGCCTGACCCTGGAAACTCA AGCGTAGACTGGCAGAAACGCTGCATGACCCTGGAAACTCA < 41bp 0.351027632706654 0.775320976447427 0.107181996 0.11270508 prediction 0.550641952894855 Functional Gain - PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68008635 chr14:68008639 nonsynonymous SNV 0.583 0 25 hm5C_associated_SNPs_104334 0 0 0 0 2 PLEKHH1 chr14:68008551 3'AG 68008551 Downstream 89bp
chr14 68008639 68008639 1 + C A COAD 68008635 + 68008615 68008655 41 AGCGTAGACTGGCAGAAACGCTGCCTGACCCTGGAAACTCA AGCGTAGACTGGCAGAAACGCTGCATGACCCTGGAAACTCA < 41bp 0.351027632706654 0.775320976447427 0.107181996 0.11270508 prediction 0.550641952894855 Functional Gain - PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68008635 chr14:68008639 nonsynonymous SNV 0.583 0 25 hm5C_associated_SNPs_104334 0 0 0 0 2 PLEKHH1 chr14:68008710 5'GT 68008710 Upstream 72bp
chr17 33318105 33318105 1 + C G BRCA 33318104 + 33318084 33318124 41 GTCGCATTTTTAACTGCAACCCAGATGATATGGCACGGGAC GTCGCATTTTTAACTGCAACCGAGATGATATGGCACGGGAC < 41bp 0.55619246228539 0.831480086150686 0.30000824 0.48115075 prediction 0.550575247730593 Functional Gain - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33318104 chr17:33318105 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_104336 0 0 1 0 1 LIG3 chr17:33318133 5'GT 33318133 Upstream 29bp
chr4 15826613 15826613 1 + C A COAD 15826609 + 15826589 15826629 41 TAGGCTACCTTGCTGATGACCTCACATGGTGTGGTGAATTC TAGGCTACCTTGCTGATGACCTCAAATGGTGTGGTGAATTC < 41bp 0.358563969131138 0.775277217823095 0.08010185 0.8974427 prediction 0.55055443564619 Functional Gain - CD38 ENSG00000004468 CDS Human protein_coding chr4:15826609 chr4:15826613 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_104337 0 0 0 0 1 CD38 chr4:15826639 5'GT 15826639 Upstream 27bp
chr12 57167880 57167880 1 + C G BRCA 57167879 + 57167859 57167899 41 GACAGGCTGGAGACGGTGACCCTGGATGTTACCAAGATGGA GACAGGCTGGAGACGGTGACCGTGGATGTTACCAAGATGGA < 41bp 0.555205687434402 0.830458667269046 0.10012731 0.37703785 prediction 0.550505959669287 Functional Gain - HSD17B6 ENSG00000025423 CDS Human protein_coding chr12:57167879 chr12:57167880 nonsynonymous SNV 0.945 5 22 hm5C_associated_SNPs_104339 0 0 0 0 1 HSD17B6 chr12:57167949 5'GT 57167949 Upstream 70bp
chr16 29708604 29708604 1 + C A UCEC 29708600 + 29708580 29708620 41 AGTGGGGGCATCACCCTGGACAACCTCCCCCAGTTCTGCGG AGTGGGGGCATCACCCTGGACAACATCCCCCAGTTCTGCGG < 41bp 0.369620709578258 0.775250977296744 0.045087993 0.034889013 prediction 0.550501954593487 Functional Gain - QPRT ENSG00000103485 CDS Human protein_coding chr16:29708600 chr16:29708604 nonsynonymous SNV 0.589 2 25 hm5C_associated_SNPs_104340 0 0 1 0 1 QPRT chr16:29708520 3'AG 29708520 Downstream 85bp
chr1 206626692 206626692 1 + C A UCEC 206626688 + 206626668 206626708 41 GGCCGGCACAATGGCATCGACGGACTCATCCCCCATCAGTA GGCCGGCACAATGGCATCGACGGAATCATCCCCCATCAGTA < 41bp 0.36852603679328 0.77524032429469 0.44827816 0.48788932 prediction 0.550480648589379 Functional Gain - SRGAP2 ENSG00000163486 CDS Human other chr1:206626688 chr1:206626692 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_104342 0 0 1 0 1 SRGAP2 chr1:206626726 5'GT 206626726 Upstream 35bp
chr2 69015032 69015032 1 + C A rs146399222 69015028 + 69015008 69015048 41 ATGTCCTCATGGCCAGCTCTCAGGCGGAGATGGAGGAGTGG ATGTCCTCATGGCCAGCTCTCAGGAGGAGATGGAGGAGTGG < 41bp 0.631300293046526 0.906526858805425 0.9095979 0.9107356 prediction 0.550453131517799 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69015028 chr2:69015032 nonsynonymous SNV 0.953 0 25 hm5C_associated_SNPs_104343 0 0 0 0 2 ARHGAP25 chr2:69014972 3'AG 69014972 Downstream 61bp
chr2 69015032 69015032 1 + C A rs146399222 69015028 + 69015008 69015048 41 ATGTCCTCATGGCCAGCTCTCAGGCGGAGATGGAGGAGTGG ATGTCCTCATGGCCAGCTCTCAGGAGGAGATGGAGGAGTGG < 41bp 0.631300293046526 0.906526858805425 0.9095979 0.9107356 prediction 0.550453131517799 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69015028 chr2:69015032 nonsynonymous SNV 0.953 0 25 hm5C_associated_SNPs_104343 0 0 0 0 2 ARHGAP25 chr2:69015088 5'GT 69015088 Upstream 57bp
chr19 49459546 49459546 1 + C G LUAD 49459545 + 49459525 49459565 41 GACGGCAACTTCAACTGGGGCCGGGTTGTCGCCCTTTTCTA GACGGCAACTTCAACTGGGGCGGGGTTGTCGCCCTTTTCTA < 41bp 0.54669163485831 0.821903495876033 0.3496617 0.88724184 prediction 0.550423722035446 Functional Gain - BAX ENSG00000087088 CDS Human protein_coding chr19:49459545 chr19:49459546 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_104344 0 0 1 0 2 BAX chr19:49459455 3'AG 49459455 Downstream 92bp
chr19 49459546 49459546 1 + C G LUAD 49459545 + 49459525 49459565 41 GACGGCAACTTCAACTGGGGCCGGGTTGTCGCCCTTTTCTA GACGGCAACTTCAACTGGGGCGGGGTTGTCGCCCTTTTCTA < 41bp 0.54669163485831 0.821903495876033 0.3496617 0.88724184 prediction 0.550423722035446 Functional Gain - BAX ENSG00000087088 CDS Human protein_coding chr19:49459545 chr19:49459546 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_104344 0 0 1 0 2 BAX chr19:49459590 5'GT 49459590 Upstream 45bp
chr1 173794434 173794434 1 + C A UCEC 173794430 + 173794410 173794450 41 TCCAGACCCATCAGAAGGACCACCCAACCGATCTGGGGTTC TCCAGACCCATCAGAAGGACCACCAAACCGATCTGGGGTTC < 41bp 0.370736496237529 0.775203140248922 0.26562914 0.39697048 prediction 0.550406280497843 Functional Gain - DARS2 ENSG00000117593 CDS Human protein_coding chr1:173794430 chr1:173794434 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_104347 0 0 1 0 1 DARS2 chr1:173794494 5'GT 173794494 Upstream 61bp
chr14 24529189 24529189 1 + C A UCEC 24529185 + 24529165 24529205 41 CCTGTGTCCCACAGCAACCACACGCTGCGCTTCATGTCCTT CCTGTGTCCCACAGCAACCACACGATGCGCTTCATGTCCTT < 41bp 0.372721180275476 0.775192987907561 0.030700833 0.12280181 prediction 0.550385975815121 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24529185 chr14:24529189 nonsynonymous SNV 0.992 3 25 hm5C_associated_SNPs_104349 0 0 0 0 2 CARMIL3 chr14:24529179 3'AG 24529179 Downstream 11bp
chr14 24529189 24529189 1 + C A UCEC 24529185 + 24529165 24529205 41 CCTGTGTCCCACAGCAACCACACGCTGCGCTTCATGTCCTT CCTGTGTCCCACAGCAACCACACGATGCGCTTCATGTCCTT < 41bp 0.372721180275476 0.775192987907561 0.030700833 0.12280181 prediction 0.550385975815121 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24529185 chr14:24529189 nonsynonymous SNV 0.992 3 25 hm5C_associated_SNPs_104349 0 0 0 0 2 CARMIL3 chr14:24529272 5'GT 24529272 Upstream 84bp
chr20 60868864 60868864 1 + C G UVM 60868863 + 60868843 60868883 41 GGTTCTACCCAGGCAATAACCCCTACACTGGGACCCCCGAC GGTTCTACCCAGGCAATAACCGCTACACTGGGACCCCCGAC < 41bp 0.473496956726898 0.775171138319785 0.24887484 0.28569555 prediction 0.55034227663957 Functional Gain - OSBPL2 ENSG00000130703 CDS Human protein_coding chr20:60868863 chr20:60868864 nonsynonymous SNV 0.981 4 22 hm5C_associated_SNPs_104351 0 0 1 0 1 OSBPL2 chr20:60868841 3'AG 60868841 Downstream 24bp
chr8 71595773 71595773 1 + C A rs554978828 71595769 + 71595749 71595789 41 GCCTTGCTCTGTCACCCAGGCTGGCCTGCAGTGGCGCCTTC GCCTTGCTCTGTCACCCAGGCTGGACTGCAGTGGCGCCTTC < 41bp 0.531722681130231 0.806889709526385 0.09877214 0.09249815 prediction 0.550334056792307 Functional Gain - XKR9 ENSG00000221947 CDS Human protein_coding chr8:71595769 chr8:71595773 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_104352 0 0 0 0 1 XKR9 chr8:71595748 3'AG 71595748 Downstream 26bp
chr19 48789060 48789060 1 + C A LUAD 48789056 + 48789036 48789076 41 AAACCAAAGACGCAACCCCTCAGCCGGATATTCTTCCTAAA AAACCAAAGACGCAACCCCTCAGCAGGATATTCTTCCTAAA < 41bp 0.37875131354197 0.775145876385215 0.17159197 0.15237719 prediction 0.550291752770429 Functional Gain - ZNF114 ENSG00000178150 CDS Human protein_coding chr19:48789056 chr19:48789060 nonsynonymous SNV 0.011 0 25 hm5C_associated_SNPs_104357 0 0 0 0 1 ZNF114 chr19:48789018 3'AG 48789018 Downstream 43bp
chr15 43890406 43890406 1 + C G LGG 43890405 + 43890385 43890425 41 ACTCAGGTGGAGAGACTTATCCAAGAACGTGGCTGGGAGTT ACTCAGGTGGAGAGACTTATCGAAGAACGTGGCTGGGAGTT < 41bp 0.492583469617726 0.775124704106774 0.77130675 0.8902993 prediction 0.550249408213548 Functional Gain - CKMT1B ENSG00000237289 CDS Human protein_coding chr15:43890405 chr15:43890406 nonsynonymous SNV 0.896 2 22 hm5C_associated_SNPs_104359 0 0 0 0 1 CKMT1B chr15:43890391 3'AG 43890391 Downstream 16bp
chr6 33380552 33380552 1 + T A LAML 33380548 + 33380528 33380568 41 GTCCCTGGGAACCGGCTGGTCAGCTGTGAGAAGTGTCGCCA GTCCCTGGGAACCGGCTGGTCAGCAGTGAGAAGTGTCGCCA < 41bp 0.543429189516441 0.818545964959077 0.433567 0.17647779 prediction 0.550233550885273 Functional Gain - PHF1 ENSG00000112511 CDS Human protein_coding chr6:33380548 chr6:33380552 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_104361 0 0 1 2 2 PHF1 chr6:33380475 3'AG 33380475 Downstream 78bp
chr6 33380552 33380552 1 + T A LAML 33380548 + 33380528 33380568 41 GTCCCTGGGAACCGGCTGGTCAGCTGTGAGAAGTGTCGCCA GTCCCTGGGAACCGGCTGGTCAGCAGTGAGAAGTGTCGCCA < 41bp 0.543429189516441 0.818545964959077 0.433567 0.17647779 prediction 0.550233550885273 Functional Gain - PHF1 ENSG00000112511 CDS Human protein_coding chr6:33380548 chr6:33380552 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_104361 0 0 1 2 2 PHF1 chr6:33380570 5'GT 33380570 Upstream 19bp
chr14 105964187 105964187 1 + C G rs150385054 105964183 + 105964163 105964203 41 AGGTGCCTGCTGCAGCCTCACAGCCCACCTTCCTGCCCTGG AGGTGCCTGCTGCAGCCTCACAGCGCACCTTCCTGCCCTGG < 41bp 0.489101311031148 0.775098792815012 0.38635522 0.5891466 prediction 0.550197585630024 Functional Gain - C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105964183 chr14:105964187 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_104362 0 0 0 0 1 C14orf80 chr14:105964135 3'AG 105964135 Downstream 53bp
chr13 113817408 113817408 1 + C G rs186968607 113817407 + 113817387 113817427 41 CTACACCTGCACCTGCTCCCCCGGCTATGAGGGCAGCAACT CTACACCTGCACCTGCTCCCCGGGCTATGAGGGCAGCAACT < 41bp 0.470067966064834 0.775056999822094 0.18800777 0.88077116 prediction 0.550113999644188 Functional Gain - PROZ ENSG00000126231 CDS Human protein_coding chr13:113817407 chr13:113817408 synonymous SNV . 0 22 hm5C_associated_SNPs_104371 0 0 0 0 2 PROZ chr13:113817323 3'AG 113817323 Downstream 86bp
chr13 113817408 113817408 1 + C G rs186968607 113817407 + 113817387 113817427 41 CTACACCTGCACCTGCTCCCCCGGCTATGAGGGCAGCAACT CTACACCTGCACCTGCTCCCCGGGCTATGAGGGCAGCAACT < 41bp 0.470067966064834 0.775056999822094 0.18800777 0.88077116 prediction 0.550113999644188 Functional Gain - PROZ ENSG00000126231 CDS Human protein_coding chr13:113817407 chr13:113817408 synonymous SNV . 0 22 hm5C_associated_SNPs_104371 0 0 0 0 2 PROZ chr13:113817436 5'GT 113817436 Upstream 29bp
chr10 20290841 20290841 1 + C A BLCA 20290837 + 20290817 20290857 41 GACACGAACCGAGCAAGCGTCGGCCAAGACTCTCCTGAGCC GACACGAACCGAGCAAGCGTCGGCAAAGACTCTCCTGAGCC < 41bp 0.37995729662599 0.775052144732998 0.54418963 0.48982194 prediction 0.550104289465996 Functional Gain - PLXDC2 ENSG00000120594 CDS Human protein_coding chr10:20290837 chr10:20290841 nonsynonymous SNV 0.069 1 25 hm5C_associated_SNPs_104372 0 0 1 0 1 PLXDC2 chr10:20290915 5'GT 20290915 Upstream 75bp
chr12 124172643 124172643 1 + C A rs144567556 124172639 + 124172619 124172659 41 CTTTGAAGTATATGTGGATACTGACGCAAAAGACTTTGCAG CTTTGAAGTATATGTGGATACTGAAGCAAAAGACTTTGCAG < 41bp 0.377060713841659 0.775030599167637 0.1554904 0.3590859 prediction 0.550061198335273 Functional Gain - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124172639 chr12:124172643 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_104373 1 0 0 0 2 TCTN2 chr12:124172598 3'AG 124172598 Downstream 46bp
chr12 124172643 124172643 1 + C A rs144567556 124172639 + 124172619 124172659 41 CTTTGAAGTATATGTGGATACTGACGCAAAAGACTTTGCAG CTTTGAAGTATATGTGGATACTGAAGCAAAAGACTTTGCAG < 41bp 0.377060713841659 0.775030599167637 0.1554904 0.3590859 prediction 0.550061198335273 Functional Gain - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124172639 chr12:124172643 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_104373 1 0 0 0 2 TCTN2 chr12:124172724 5'GT 124172724 Upstream 82bp
chr19 34297866 34297866 1 + T C STAD 34297864 + 34297844 34297884 41 GGGGAGATTTTCCGCTACGTCCTGAGCTTCCTGCGGACGTC GGGGAGATTTTCCGCTACGTCCCGAGCTTCCTGCGGACGTC < 41bp 0.514167175461494 0.789179813006423 0.13651195 0.17822826 prediction 0.550025275089859 Functional Gain - KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34297864 chr19:34297866 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_104376 0 0 1 0 2 KCTD15 chr19:34297768 3'AG 34297768 Downstream 99bp
chr19 34297866 34297866 1 + T C STAD 34297864 + 34297844 34297884 41 GGGGAGATTTTCCGCTACGTCCTGAGCTTCCTGCGGACGTC GGGGAGATTTTCCGCTACGTCCCGAGCTTCCTGCGGACGTC < 41bp 0.514167175461494 0.789179813006423 0.13651195 0.17822826 prediction 0.550025275089859 Functional Gain - KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34297864 chr19:34297866 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_104376 0 0 1 0 2 KCTD15 chr19:34297912 5'GT 34297912 Upstream 47bp
chr2 228337216 228337216 1 + C G HNSC 228337215 + 228337195 228337235 41 ATGACCGGCCTCCCGCACAACCGAAAGTGCTTCGACTGCGA ATGACCGGCCTCCCGCACAACGGAAAGTGCTTCGACTGCGA < 41bp 0.51552723382642 0.790515505997149 0.6854907 0.83814776 prediction 0.549976544341457 Functional Gain - AGFG1 ENSG00000173744 CDS Human protein_coding chr2:228337215 chr2:228337216 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_104380 0 0 0 0 1 AGFG1 chr2:228337304 5'GT 228337304 Upstream 89bp
chr2 133175422 133175422 1 + C G SKCM 133175421 + 133175401 133175441 41 GCCTCCGCAGCTGAGGAAGTCCGAGAGCGAAGAGAGCAGGA GCCTCCGCAGCTGAGGAAGTCGGAGAGCGAAGAGAGCAGGA < 41bp 0.54078410019123 0.815758483752316 0.4329262 0.9208879 prediction 0.549948767122173 Functional Gain - GPR39 ENSG00000183840 CDS Human protein_coding chr2:133175421 chr2:133175422 synonymous SNV . 0 22 hm5C_associated_SNPs_104383 0 0 0 0 1 GPR39 chr2:133175471 5'GT 133175471 Upstream 50bp
chr19 39908646 39908646 1 + C G GBM 39908645 + 39908625 39908665 41 AGGAGGCGGAGGGGGTGGCCCCCGGCTACGAGGGGGTGAGC AGGAGGCGGAGGGGGTGGCCCGCGGCTACGAGGGGGTGAGC < 41bp 0.564244240560624 0.839205123729992 0.8583324 0.9078982 prediction 0.549921766338737 Functional Gain - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39908645 chr19:39908646 synonymous SNV . 0 22 hm5C_associated_SNPs_104384 0 0 1 0 1 PLEKHG2 chr19:39908745 5'GT 39908745 Upstream 100bp
chr1 43803901 43803901 1 + C A HNSC 43803897 + 43803877 43803917 41 TACCAGCTGCTGTATGCCTACCCGCGGTAGGTGCTGGACTG TACCAGCTGCTGTATGCCTACCCGAGGTAGGTGCTGGACTG < 41bp 0.373204283809059 0.774925240929291 0.14571029 0.20549333 prediction 0.549850481858582 Functional Gain - MPL ENSG00000117400 CDS Human protein_coding chr1:43803897 chr1:43803901 synonymous SNV . 0 25 hm5C_associated_SNPs_104390 0 0 0 0 1 MPL chr1:43803902 5'GT 43803902 Upstream 2bp
chr2 162279937 162279937 1 + C A LIHC 162279933 + 162279913 162279953 41 CCCCTCGCCCAACGACTCGCCGCGCTCGCAGATCGTGCCCG CCCCTCGCCCAACGACTCGCCGCGATCGCAGATCGTGCCCG < 41bp 0.63668193020287 0.911578936039877 0.054678977 0.09982711 prediction 0.549794011674014 Functional Gain - TBR1 ENSG00000136535 CDS Human protein_coding chr2:162279933 chr2:162279937 synonymous SNV . 0 25 hm5C_associated_SNPs_104391 0 0 1 0 1 TBR1 chr2:162279880 3'AG 162279880 Downstream 58bp
chr1 169765069 169765069 1 + T G rs578208754 169765067 + 169765047 169765087 41 TCGTCCGGGTGCAGCACATTCTTGATTGGTCTCATGCCTTT TCGTCCGGGTGCAGCACATTCTGGATTGGTCTCATGCCTTT < 41bp 0.543015114090797 0.817897191998924 0.23967564 0.46937904 prediction 0.549764155816255 Functional Gain - C1orf112 ENSG00000000460 UTR5 Human protein_coding chr1:169765067 chr1:169765069 . . 0 23 hm5C_associated_SNPs_104393 0 0 1 0 1 C1orf112 chr1:169765124 5'GT 169765124 Upstream 56bp
chr17 21030299 21030299 1 + T A rs78159258 21030295 + 21030275 21030315 41 TTGATTGACTATGGTCTCTCCGGCTACCAGGTAGGGGCTGG TTGATTGACTATGGTCTCTCCGGCAACCAGGTAGGGGCTGG < 41bp 0.544690340829728 0.819557862780775 0.66983885 0.49413514 prediction 0.549735043902092 Functional Gain - DHRS7B ENSG00000109016 CDS Human protein_coding chr17:21030295 chr17:21030299 synonymous SNV . 0 25 hm5C_associated_SNPs_104394 0 0 1 0 1 DHRS7B chr17:21030304 5'GT 21030304 Upstream 6bp
chr9 136287582 136287582 1 + C G rs34024143 136287581 + 136287561 136287601 41 AGGATGCACCAGCGTCACCCCCGGGCAAGATGCCCTCCCCT AGGATGCACCAGCGTCACCCCGGGGCAAGATGCCCTCCCCT < 41bp 0.495715493998505 0.774845913434511 0.8136134 0.9293328 prediction 0.549691826869023 Functional Gain - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136287581 chr9:136287582 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_104397 0 0 0 0 1 ADAMTS13 chr9:136287668 5'GT 136287668 Upstream 87bp
chr4 128688282 128688282 1 + T A LUSC 128688278 + 128688258 128688298 41 TATTATGAAAATAGCAAAATCAGATGGAATTGCTGGTTTAT TATTATGAAAATAGCAAAATCAGAAGGAATTGCTGGTTTAT < 41bp 0.471288313004494 0.774812422151803 0.81973195 0.8383206 prediction 0.549624844303607 Functional Gain - SLC25A31 ENSG00000151475 CDS Human protein_coding chr4:128688278 chr4:128688282 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_104400 0 0 0 0 2 SLC25A31 chr4:128688221 3'AG 128688221 Downstream 62bp
chr4 128688282 128688282 1 + T A LUSC 128688278 + 128688258 128688298 41 TATTATGAAAATAGCAAAATCAGATGGAATTGCTGGTTTAT TATTATGAAAATAGCAAAATCAGAAGGAATTGCTGGTTTAT < 41bp 0.471288313004494 0.774812422151803 0.81973195 0.8383206 prediction 0.549624844303607 Functional Gain - SLC25A31 ENSG00000151475 CDS Human protein_coding chr4:128688278 chr4:128688282 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_104400 0 0 0 0 2 SLC25A31 chr4:128688375 5'GT 128688375 Upstream 94bp
chr12 6554304 6554304 1 + C G BLCA 6554303 + 6554283 6554323 41 TGGCTGTGCGTTCTGGGGACCCTGGTGGGGCTCTCAGCTAC TGGCTGTGCGTTCTGGGGACCGTGGTGGGGCTCTCAGCTAC < 41bp 0.556530049201846 0.831329671528833 0.36814487 0.8434682 prediction 0.549599244653973 Functional Gain - CD27 ENSG00000139193 CDS Human protein_coding chr12:6554303 chr12:6554304 nonsynonymous SNV 0.991 2 22 hm5C_associated_SNPs_104404 0 0 0 0 1 CD27 chr12:6554397 5'GT 6554397 Upstream 94bp
chr2 28627176 28627176 1 + T G SKCM 28627174 + 28627154 28627194 41 ATGGCCCTCCCAAGACCTGGCGTGATCAAGACCATTGGCAC ATGGCCCTCCCAAGACCTGGCGGGATCAAGACCATTGGCAC < 41bp 0.59944464602172 0.874232952851917 0.33624768 0.87971985 prediction 0.549576613660393 Functional Gain - FOSL2 ENSG00000075426 CDS Human protein_coding chr2:28627174 chr2:28627176 nonsynonymous SNV 0.915 3 23 hm5C_associated_SNPs_104406 0 0 1 0 1 FOSL2 chr2:28627225 5'GT 28627225 Upstream 50bp
chr11 113857403 113857403 1 + T G LGG 113857401 + 113857381 113857421 41 GGCTACTCGGTCTTCCTGATCATCGTTTCTGACACGCTGCC GGCTACTCGGTCTTCCTGATCAGCGTTTCTGACACGCTGCC < 41bp 0.423096541208317 0.774787414780646 0.2027393 0.90532756 prediction 0.549574829561293 Functional Gain - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113857401 chr11:113857403 nonsynonymous SNV 0.977 3 23 hm5C_associated_SNPs_104407 0 0 0 1 1 HTR3A chr11:113857450 5'GT 113857450 Upstream 48bp
chr1 192545020 192545020 1 + T G STAD 192545017 + 192544997 192545037 41 ATTGAAAGGAACCACTCATTCACTTCTAGACGACAAAATGC ATTGAAAGGAACCACTCATTCACGTCTAGACGACAAAATGC < 41bp 0.422950053466813 0.774776759489187 0.09557581 0.23373193 prediction 0.549553518978373 Functional Gain - RGS1 ENSG00000090104 CDS Human protein_coding chr1:192545017 chr1:192545020 nonsynonymous SNV 0.916 1 24 hm5C_associated_SNPs_104408 0 0 0 0 1 RGS1 chr1:192545059 5'GT 192545059 Upstream 40bp
chr1 150305652 150305652 1 + C A STAD 150305648 + 150305628 150305668 41 TGGTGGGCCTGGCTAATCTCCATGCCATGGGCATTGCTCCC TGGTGGGCCTGGCTAATCTCCATGACATGGGCATTGCTCCC < 41bp 0.367628641001448 0.774770102327979 0.60250056 0.23764852 prediction 0.549540204655957 Functional Gain - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150305648 chr1:150305652 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_104411 0 0 0 2 1 PRPF3 chr1:150305670 5'GT 150305670 Upstream 19bp
chr20 34205139 34205139 1 + C G OV 34205138 + 34205118 34205158 41 TGAGGCAGGAGATGCCTCCCCCGCGGGTGTTCAAGAGCTTT TGAGGCAGGAGATGCCTCCCCGGCGGGTGTTCAAGAGCTTT < 41bp 0.552238243916031 0.827006009161956 0.54923755 0.84635454 prediction 0.549535530491851 Functional Gain - SPAG4 ENSG00000061656 CDS Human protein_coding chr20:34205138 chr20:34205139 nonsynonymous SNV 0.679 0 22 hm5C_associated_SNPs_104412 0 0 0 0 2 SPAG4 chr20:34205058 3'AG 34205058 Downstream 82bp
chr20 34205139 34205139 1 + C G OV 34205138 + 34205118 34205158 41 TGAGGCAGGAGATGCCTCCCCCGCGGGTGTTCAAGAGCTTT TGAGGCAGGAGATGCCTCCCCGGCGGGTGTTCAAGAGCTTT < 41bp 0.552238243916031 0.827006009161956 0.54923755 0.84635454 prediction 0.549535530491851 Functional Gain - SPAG4 ENSG00000061656 CDS Human protein_coding chr20:34205138 chr20:34205139 nonsynonymous SNV 0.679 0 22 hm5C_associated_SNPs_104412 0 0 0 0 2 SPAG4 chr20:34205162 5'GT 34205162 Upstream 24bp
chr16 20448669 20448669 1 + C A LUAD 20448665 + 20448645 20448685 41 CTGGAGTCGGCTGTGGTCAGCAGCCCAGACCCCATCAGGGG CTGGAGTCGGCTGTGGTCAGCAGCACAGACCCCATCAGGGG < 41bp 0.370445530211831 0.774751682669433 0.3467561 0.26999772 prediction 0.549503365338866 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20448665 chr16:20448669 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_104416 0 0 0 0 2 ACSM5 chr16:20448590 3'AG 20448590 Downstream 80bp
chr16 20448669 20448669 1 + C A LUAD 20448665 + 20448645 20448685 41 CTGGAGTCGGCTGTGGTCAGCAGCCCAGACCCCATCAGGGG CTGGAGTCGGCTGTGGTCAGCAGCACAGACCCCATCAGGGG < 41bp 0.370445530211831 0.774751682669433 0.3467561 0.26999772 prediction 0.549503365338866 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20448665 chr16:20448669 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_104416 0 0 0 0 2 ACSM5 chr16:20448689 5'GT 20448689 Upstream 21bp
chr8 30032679 30032679 1 + T A SKCM 30032675 + 30032655 30032695 41 TAGTGATTGGCGAAGGGAACCTAATAGAAGAACAGGCCCTT TAGTGATTGGCGAAGGGAACCTAAAAGAAGAACAGGCCCTT < 41bp 0.462796446712968 0.774736797823518 0.1980288 0.39288312 prediction 0.549473595647036 Functional Gain - DCTN6 ENSG00000104671 CDS Human protein_coding chr8:30032675 chr8:30032679 nonsynonymous SNV 0.989 3 25 hm5C_associated_SNPs_104417 0 0 1 0 2 DCTN6 chr8:30032601 3'AG 30032601 Downstream 79bp
chr8 30032679 30032679 1 + T A SKCM 30032675 + 30032655 30032695 41 TAGTGATTGGCGAAGGGAACCTAATAGAAGAACAGGCCCTT TAGTGATTGGCGAAGGGAACCTAAAAGAAGAACAGGCCCTT < 41bp 0.462796446712968 0.774736797823518 0.1980288 0.39288312 prediction 0.549473595647036 Functional Gain - DCTN6 ENSG00000104671 CDS Human protein_coding chr8:30032675 chr8:30032679 nonsynonymous SNV 0.989 3 25 hm5C_associated_SNPs_104417 0 0 1 0 2 DCTN6 chr8:30032706 5'GT 30032706 Upstream 28bp
chr4 166220778 166220778 1 + C G rs138582348 166220777 + 166220757 166220797 41 ATTAATGAAGAGTGTCCGGACCCGGCTGAGGACACCCATGA ATTAATGAAGAGTGTCCGGACGCGGCTGAGGACACCCATGA < 41bp 0.554920102188205 0.829613706096646 0.14700168 0.41133088 prediction 0.549387207816882 Functional Gain - KLHL2 ENSG00000109466 CDS Human protein_coding chr4:166220777 chr4:166220778 synonymous SNV . 0 22 hm5C_associated_SNPs_104421 0 0 0 0 1 KLHL2 chr4:166220808 5'GT 166220808 Upstream 31bp
chr7 142836665 142836665 1 + C G rs148216903 142836664 + 142836644 142836684 41 TTCGGGAATTAGGCATCTGCCCTGATGATGCTGCTGTAATC TTCGGGAATTAGGCATCTGCCGTGATGATGCTGCTGTAATC < 41bp 0.552246227943052 0.8268899849642 0.096992046 0.11576697 prediction 0.549287514042295 Functional Gain - PIP ENSG00000159763 CDS Human protein_coding chr7:142836664 chr7:142836665 nonsynonymous SNV 0.421 4 22 hm5C_associated_SNPs_104426 0 0 0 0 1 PIP chr7:142836611 3'AG 142836611 Downstream 55bp
chr8 9577998 9577998 1 + T A KIRC 9577994 + 9577974 9578014 41 GGCTCTGACCCCTCCATCATCTCCTTACAAGGCTTCACAGC GGCTCTGACCCCTCCATCATCTCCATACAAGGCTTCACAGC < 41bp 0.416781183887723 0.774638394925971 0.24682233 0.96997607 prediction 0.549276789851942 Functional Gain - TNKS ENSG00000173273 CDS Human protein_coding chr8:9577994 chr8:9577998 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_104427 0 0 1 0 1 TNKS chr8:9578055 5'GT 9578055 Upstream 58bp
chr20 1099523 1099523 1 + T G rs1803415 1099521 + 1099501 1099541 41 GAAGTGGTGACACACGGTTACTTCGGCTTGGGTGTCGGTGA GAAGTGGTGACACACGGTTACTGCGGCTTGGGTGTCGGTGA < 41bp 0.436483091868581 0.774628655789892 0.6990649 0.7752503 prediction 0.549257311579784 Functional Gain - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1099521 chr20:1099523 nonsynonymous SNV 0.165 0 23 hm5C_associated_SNPs_104429 0 0 1 0 1 PSMF1 chr20:1099545 5'GT 1099545 Upstream 23bp
chr4 68449311 68449311 1 + C G LUAD 68449310 + 68449290 68449330 41 AGATGTTTTTATACAGTGTCCCGGAAAGAGGCAACTGAGAT AGATGTTTTTATACAGTGTCCGGGAAAGAGGCAACTGAGAT < 41bp 0.479529328236277 0.774596465219311 0.1482375 0.3109153 prediction 0.549192930438621 Functional Gain - STAP1 ENSG00000035720 CDS Human protein_coding chr4:68449310 chr4:68449311 nonsynonymous SNV 0.985 5 22 hm5C_associated_SNPs_104432 0 0 0 0 1 STAP1 chr4:68449292 3'AG 68449292 Downstream 20bp
chr6 129807650 129807650 1 - G T LUSC 129807654 - 129807634 129807674 41 CCTGTGGAGAGATGCACTTCCAGACGGCCCCTGTTGAGGAG CCTGTGGAGAGATGCACTTCCAGAAGGCCCCTGTTGAGGAG < 41bp 0.392890954154535 0.774581285635053 0.4495664 0.28966126 prediction 0.549162571270107 Functional Gain - LAMA2 ENSG00000196569 CDS Human protein_coding chr6:129807654 chr6:129807650 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_104433 0 0 0 0 1 LAMA2 chr6:129807717 3'AG 129807717 Downstream 68bp
chr1 205033502 205033502 1 + C A BLCA 205033498 + 205033478 205033518 41 CGTGAGGCGTCTGATCCCCGCGGCCCGCGGGGGAGAGATCC CGTGAGGCGTCTGATCCCCGCGGCACGCGGGGGAGAGATCC < 41bp 0.363760508779356 0.774580306781807 0.31610695 0.7088829 prediction 0.549160613563614 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205033498 chr1:205033502 synonymous SNV . 0 25 hm5C_associated_SNPs_104434 0 0 0 0 2 CNTN2 chr1:205033450 3'AG 205033450 Downstream 53bp
chr1 205033502 205033502 1 + C A BLCA 205033498 + 205033478 205033518 41 CGTGAGGCGTCTGATCCCCGCGGCCCGCGGGGGAGAGATCC CGTGAGGCGTCTGATCCCCGCGGCACGCGGGGGAGAGATCC < 41bp 0.363760508779356 0.774580306781807 0.31610695 0.7088829 prediction 0.549160613563614 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205033498 chr1:205033502 synonymous SNV . 0 25 hm5C_associated_SNPs_104434 0 0 0 0 2 CNTN2 chr1:205033600 5'GT 205033600 Upstream 99bp
chr1 2519810 2519810 1 + C G rs78426182 2519806 + 2519786 2519826 41 AGGCTTCTCCGGAGTTTGGCCAAGCGACCTGGTGTCTTCGC AGGCTTCTCCGGAGTTTGGCCAAGGGACCTGGTGTCTTCGC < 41bp 0.509842611042147 0.784416966939208 0.851168 0.8972204 prediction 0.549148711794123 Functional Gain - FAM213B ENSG00000157870 CDS Human protein_coding chr1:2519806 chr1:2519810 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_104435 0 0 0 0 2 FAM213B chr1:2519775 3'AG 2519775 Downstream 36bp
chr1 2519810 2519810 1 + C G rs78426182 2519806 + 2519786 2519826 41 AGGCTTCTCCGGAGTTTGGCCAAGCGACCTGGTGTCTTCGC AGGCTTCTCCGGAGTTTGGCCAAGGGACCTGGTGTCTTCGC < 41bp 0.509842611042147 0.784416966939208 0.851168 0.8972204 prediction 0.549148711794123 Functional Gain - FAM213B ENSG00000157870 CDS Human protein_coding chr1:2519806 chr1:2519810 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_104435 0 0 0 0 2 FAM213B chr1:2519892 5'GT 2519892 Upstream 83bp
chr11 59857220 59857220 1 + C G rs149172443 59857216 + 59857196 59857236 41 CCCCAGGAAGTATCTTCAGGCAGACTATTGAAGTCGGCCTC CCCCAGGAAGTATCTTCAGGCAGAGTATTGAAGTCGGCCTC < 41bp 0.483102322581818 0.774564850595739 0.08044985 0.53241855 prediction 0.549129701191477 Functional Gain - MS4A2 ENSG00000149534 CDS Human protein_coding chr11:59857216 chr11:59857220 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_104438 0 0 0 0 1 MS4A2 chr11:59857294 5'GT 59857294 Upstream 75bp
chr6 50697004 50697004 1 + C A UCEC 50697000 + 50696980 50697020 41 AGACGGAAAGCAGCTAATGTCACCCTCCTTACTTCCTTGGT AGACGGAAAGCAGCTAATGTCACCATCCTTACTTCCTTGGT < 41bp 0.358060089153787 0.774536934066654 0.06740743 0.1329517 prediction 0.549073868133308 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50697000 chr6:50697004 nonsynonymous SNV 0.990 5 25 hm5C_associated_SNPs_104441 0 0 0 0 2 TFAP2D chr6:50696907 3'AG 50696907 Downstream 98bp
chr6 50697004 50697004 1 + C A UCEC 50697000 + 50696980 50697020 41 AGACGGAAAGCAGCTAATGTCACCCTCCTTACTTCCTTGGT AGACGGAAAGCAGCTAATGTCACCATCCTTACTTCCTTGGT < 41bp 0.358060089153787 0.774536934066654 0.06740743 0.1329517 prediction 0.549073868133308 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50697000 chr6:50697004 nonsynonymous SNV 0.990 5 25 hm5C_associated_SNPs_104441 0 0 0 0 2 TFAP2D chr6:50697025 5'GT 50697025 Upstream 22bp
chr18 71816260 71816260 1 + C A LIHC 71816256 + 71816236 71816276 41 ATCTGGACGCAGGGACCGAGCCCCCGAAAAGCAAAGGAGGA ATCTGGACGCAGGGACCGAGCCCCAGAAAAGCAAAGGAGGA < 41bp 0.368528195315597 0.774529674261784 0.09824684 0.18605515 prediction 0.549059348523568 Functional Gain - TIMM21 ENSG00000075336 CDS Human protein_coding chr18:71816256 chr18:71816260 synonymous SNV . 0 25 hm5C_associated_SNPs_104443 0 0 1 0 1 TIMM21 chr18:71816344 5'GT 71816344 Upstream 85bp
chr16 68279444 68279444 1 + C G SKCM 68279443 + 68279423 68279463 41 CTCCCGGCCGGACGTCACCCCCCAGTGGTGCTGGGTGAGGC CTCCCGGCCGGACGTCACCCCGCAGTGGTGCTGGGTGAGGC < 41bp 0.469533726669832 0.774501862570954 0.06518978 0.12320474 prediction 0.549003725141909 Functional Gain - PLA2G15 ENSG00000103066 CDS Human protein_coding chr16:68279443 chr16:68279444 nonsynonymous SNV 0.813 4 22 hm5C_associated_SNPs_104446 0 0 1 0 1 PLA2G15 chr16:68279456 5'GT 68279456 Upstream 13bp
chr1 209951495 209951495 1 + T A LUAD 209951491 + 209951471 209951511 41 CAGAGGCAGAGAAACTCACCCTGGTGACCAGAGTACAGCAG CAGAGGCAGAGAAACTCACCCTGGAGACCAGAGTACAGCAG < 41bp 0.575905198624313 0.850402069525112 0.36083072 0.51790386 prediction 0.548993741801599 Functional Gain - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209951491 chr1:209951495 nonsynonymous SNV 0.948 0 25 hm5C_associated_SNPs_104447 0 0 0 0 1 TRAF3IP3 chr1:209951456 3'AG 209951456 Downstream 40bp
chr19 55105923 55105923 1 + C A rs10416264 55105919 + 55105899 55105939 41 CTTCCAGGGCTGAGTCTGGGCCCCCGGACCCACGTGCAGGC CTTCCAGGGCTGAGTCTGGGCCCCAGGACCCACGTGCAGGC < 41bp 0.365343603839 0.774486031151595 0.10498169 0.13473105 prediction 0.548972062303191 Functional Gain - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55105919 chr19:55105923 synonymous SNV . 0 25 hm5C_associated_SNPs_104448 0 0 0 0 2 LILRA1 chr19:55105906 3'AG 55105906 Downstream 18bp
chr19 55105923 55105923 1 + C A rs10416264 55105919 + 55105899 55105939 41 CTTCCAGGGCTGAGTCTGGGCCCCCGGACCCACGTGCAGGC CTTCCAGGGCTGAGTCTGGGCCCCAGGACCCACGTGCAGGC < 41bp 0.365343603839 0.774486031151595 0.10498169 0.13473105 prediction 0.548972062303191 Functional Gain - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55105919 chr19:55105923 synonymous SNV . 0 25 hm5C_associated_SNPs_104448 0 0 0 0 2 LILRA1 chr19:55105941 5'GT 55105941 Upstream 19bp
chr2 201523899 201523899 1 + T G SKCM 201523897 + 201523877 201523917 41 TTAAAATTCAGGTGGTCAGCCGTGAATTAAGAATGCCAATG TTAAAATTCAGGTGGTCAGCCGGGAATTAAGAATGCCAATG < 41bp 0.451749901326966 0.774411467611347 0.3040133 0.899546 prediction 0.548822935222694 Functional Gain - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201523897 chr2:201523899 synonymous SNV . 0 23 hm5C_associated_SNPs_104457 0 0 0 0 1 AOX1 chr2:201523888 3'AG 201523888 Downstream 12bp
chr20 31805408 31805408 1 + C A rs73904636 31805404 + 31805384 31805424 41 GCTGGCCTTGCCCTTGGCACCACACAAGCAGCCTTGGCCTG GCTGGCCTTGCCCTTGGCACCACAAAAGCAGCCTTGGCCTG < 41bp 0.634570842940275 0.908980103641073 0.05390358 0.08627361 prediction 0.548818521401597 Functional Gain - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31805404 chr20:31805408 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_104458 0 0 0 0 1 BPIFA3 chr20:31805469 5'GT 31805469 Upstream 62bp
chr12 119563266 119563266 1 + C A LUAD 119563262 + 119563242 119563282 41 GGTCCCAGAGCTCGGAGTCCCGCCCCTCAAGCTGTGAGAGC GGTCCCAGAGCTCGGAGTCCCGCCACTCAAGCTGTGAGAGC < 41bp 0.352424086869885 0.774396612608569 0.12537786 0.8508543 prediction 0.548793225217137 Functional Gain - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119563262 chr12:119563266 nonsynonymous SNV 0.605 1 25 hm5C_associated_SNPs_104460 0 0 0 0 2 SRRM4 chr12:119563186 3'AG 119563186 Downstream 81bp
chr12 119563266 119563266 1 + C A LUAD 119563262 + 119563242 119563282 41 GGTCCCAGAGCTCGGAGTCCCGCCCCTCAAGCTGTGAGAGC GGTCCCAGAGCTCGGAGTCCCGCCACTCAAGCTGTGAGAGC < 41bp 0.352424086869885 0.774396612608569 0.12537786 0.8508543 prediction 0.548793225217137 Functional Gain - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119563262 chr12:119563266 nonsynonymous SNV 0.605 1 25 hm5C_associated_SNPs_104460 0 0 0 0 2 SRRM4 chr12:119563284 5'GT 119563284 Upstream 19bp
chr22 21138494 21138494 1 + C G BRCA 21138493 + 21138473 21138513 41 CCCTCGAAGCGCAACTGACACCCCGGGTGGTGGAGAGATGG CCCTCGAAGCGCAACTGACACGCCGGGTGGTGGAGAGATGG < 41bp 0.473079654698407 0.774371882680107 0.024623603 0.057486683 prediction 0.548743765360215 Functional Gain - SERPIND1 ENSG00000099937 CDS Human protein_coding chr22:21138493 chr22:21138494 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_104463 0 0 1 0 1 SERPIND1 chr22:21138533 5'GT 21138533 Upstream 40bp
chr2 219300070 219300070 1 + C A rs144276467 219300066 + 219300046 219300086 41 TGGTTGCTGACACCATCTCCCGGACGGAGAAGCAAGTGGTG TGGTTGCTGACACCATCTCCCGGAAGGAGAAGCAAGTGGTG < 41bp 0.373903268510356 0.774360653892205 0.7551991 0.822491 prediction 0.548721307784409 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219300066 chr2:219300070 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_104466 0 0 1 0 1 VIL1 chr2:219300157 5'GT 219300157 Upstream 88bp
chr11 125787060 125787060 1 + C A UCEC 125787056 + 125787036 125787076 41 AACAACATCCGGCAATATTACGTGCTGTGTGAGCACAGGAA AACAACATCCGGCAATATTACGTGATGTGTGAGCACAGGAA < 41bp 0.359144190737468 0.774351127921151 0.34373856 0.37827498 prediction 0.548702255842302 Functional Gain - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125787056 chr11:125787060 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_104468 0 0 0 0 1 DDX25 chr11:125787146 5'GT 125787146 Upstream 87bp
chrX 48547364 48547364 1 + C A UCEC 48547360 + 48547340 48547380 41 ATGGACCAGCCCCTCCCCCACTCCCTCCTGCTCTGGTGCCT ATGGACCAGCCCCTCCCCCACTCCATCCTGCTCTGGTGCCT < 41bp 0.353932015840865 0.774322861715503 0.7679859 0.9415779 prediction 0.548645723431006 Functional Gain - WAS ENSG00000015285 CDS Human protein_coding chrX:48547360 chrX:48547364 nonsynonymous SNV 0.784 4 25 hm5C_associated_SNPs_104471 0 0 0 0 1 WAS chrX:48547455 5'GT 48547455 Upstream 92bp
chr5 96237258 96237258 1 + T G BLCA 96237256 + 96237236 96237276 41 GGTCAAAGAGATGATGACTACATGGACTCTCCAGAAAGGAA GGTCAAAGAGATGATGACTACAGGGACTCTCCAGAAAGGAA < 41bp 0.433152242839786 0.774304804471907 0.033194005 0.1344899 prediction 0.548609608943813 Functional Gain - ERAP2 ENSG00000164308 CDS Human protein_coding chr5:96237256 chr5:96237258 nonsynonymous SNV 0.952 4 23 hm5C_associated_SNPs_104476 0 0 0 0 1 ERAP2 chr5:96237210 3'AG 96237210 Downstream 49bp
chrX 15552367 15552367 1 + T A LAML 15552363 + 15552343 15552383 41 AAGGAACTGTCAAACATTACCACGTGCATACAAATGCTGAG AAGGAACTGTCAAACATTACCACGAGCATACAAATGCTGAG < 41bp 0.462346396450428 0.774301923961333 0.26298463 0.11430153 prediction 0.548603847922667 Functional Gain - BMX ENSG00000102010 CDS Human protein_coding chrX:15552363 chrX:15552367 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_104477 0 0 0 0 2 BMX chrX:15552335 3'AG 15552335 Downstream 33bp
chrX 15552367 15552367 1 + T A LAML 15552363 + 15552343 15552383 41 AAGGAACTGTCAAACATTACCACGTGCATACAAATGCTGAG AAGGAACTGTCAAACATTACCACGAGCATACAAATGCTGAG < 41bp 0.462346396450428 0.774301923961333 0.26298463 0.11430153 prediction 0.548603847922667 Functional Gain - BMX ENSG00000102010 CDS Human protein_coding chrX:15552363 chrX:15552367 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_104477 0 0 0 0 2 BMX chrX:15552462 5'GT 15552462 Upstream 96bp
chr16 55794579 55794579 1 + C G rs377365773 55794575 + 55794555 55794595 41 TGTGGCTCCCTGCTCTTGTCCTGGCCACTCTCGCTGCTTCC TGTGGCTCCCTGCTCTTGTCCTGGGCACTCTCGCTGCTTCC < 41bp 0.530460978229975 0.804725379016265 0.7040176 0.7326554 prediction 0.548528801572579 Functional Gain - CES1P1 ENSG00000228695 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:55794575 chr16:55794579 . . 0 25 hm5C_associated_SNPs_104482 0 0 0 0 1 CES1P1 chr16:55794605 5'GT 55794605 Upstream 27bp
chr8 27394366 27394366 1 + C G rs13439459 27394362 + 27394342 27394382 41 TTTCAAAAGCCTCTTCAGAGCAAGCGATGAGGTGAGGGGTG TTTCAAAAGCCTCTTCAGAGCAAGGGATGAGGTGAGGGGTG < 41bp 0.508252687738256 0.7825053458584 0.81168854 0.8987418 prediction 0.548505316240287 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27394362 chr8:27394366 nonsynonymous SNV 0.593 1 25 hm5C_associated_SNPs_104483 0 0 1 0 2 EPHX2 chr8:27394301 3'AG 27394301 Downstream 66bp
chr8 27394366 27394366 1 + C G rs13439459 27394362 + 27394342 27394382 41 TTTCAAAAGCCTCTTCAGAGCAAGCGATGAGGTGAGGGGTG TTTCAAAAGCCTCTTCAGAGCAAGGGATGAGGTGAGGGGTG < 41bp 0.508252687738256 0.7825053458584 0.81168854 0.8987418 prediction 0.548505316240287 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27394362 chr8:27394366 nonsynonymous SNV 0.593 1 25 hm5C_associated_SNPs_104483 0 0 1 0 2 EPHX2 chr8:27394372 5'GT 27394372 Upstream 7bp
chr1 207649582 207649582 1 + T C UCEC 207649580 + 207649560 207649600 41 TTTCTTATTGGTGTCTAAGCCTTCATAGGGTGTCCACCTCC TTTCTTATTGGTGTCTAAGCCTCCATAGGGTGTCCACCTCC < 41bp 0.536832672735737 0.811029463065635 0.83904946 0.9758653 prediction 0.548393580659795 Functional Gain - CR2 ENSG00000117322 CDS Human protein_coding chr1:207649580 chr1:207649582 nonsynonymous SNV 0.782 0 23 hm5C_associated_SNPs_104493 0 0 0 0 1 CR2 chr1:207649579 3'AG 207649579 Downstream 4bp
chr4 41259007 41259007 1 + C G BLCA 41259006 + 41258986 41259026 41 CCGCGAAGATGCAGCTCAAGCCGATGGAGATCAACCCCGAG CCGCGAAGATGCAGCTCAAGCGGATGGAGATCAACCCCGAG < 41bp 0.480415396450884 0.774192641683254 0.38833338 0.5526122 prediction 0.548385283366509 Functional Gain - UCHL1 ENSG00000154277 CDS Human protein_coding chr4:41259006 chr4:41259007 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_104494 0 0 1 0 1 UCHL1 chr4:41259026 5'GT 41259026 Upstream 20bp
chr17 19999999 19999999 1 + T G rs146091398 19999997 + 19999977 20000017 41 GCCAAGCCCTGGAACCCAGCCATCAGAGCAGGGGGCCACGG GCCAAGCCCTGGAACCCAGCCAGCAGAGCAGGGGGCCACGG < 41bp 0.592192741016375 0.866371063634033 0.2885847 0.51575124 prediction 0.548356645235316 Functional Gain - SPECC1 ENSG00000128487 CDS Human protein_coding chr17:19999997 chr17:19999999 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_104497 0 0 1 0 1 SPECC1 chr17:19999944 3'AG 19999944 Downstream 56bp
chr22 41913629 41913629 1 + C G BLCA 41913625 + 41913605 41913645 41 AAGAAGTACCTGAGCAAGACCGGCCGGGAAGGTGAGCTGGC AAGAAGTACCTGAGCAAGACCGGCGGGGAAGGTGAGCTGGC < 41bp 0.494340221389429 0.774177872378893 0.8248092 0.89952505 prediction 0.548355744757787 Functional Gain - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41913625 chr22:41913629 nonsynonymous SNV 0.821 4 25 hm5C_associated_SNPs_104498 0 0 1 0 2 ACO2 chr22:41913531 3'AG 41913531 Downstream 99bp
chr22 41913629 41913629 1 + C G BLCA 41913625 + 41913605 41913645 41 AAGAAGTACCTGAGCAAGACCGGCCGGGAAGGTGAGCTGGC AAGAAGTACCTGAGCAAGACCGGCGGGGAAGGTGAGCTGGC < 41bp 0.494340221389429 0.774177872378893 0.8248092 0.89952505 prediction 0.548355744757787 Functional Gain - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41913625 chr22:41913629 nonsynonymous SNV 0.821 4 25 hm5C_associated_SNPs_104498 0 0 1 0 2 ACO2 chr22:41913635 5'GT 41913635 Upstream 7bp
chr8 27373877 27373877 1 + T G LUAD 27373874 + 27373854 27373894 41 GGCAGGTTACCGGGTCCTAGCTATGGACATGAAAGGCTATG GGCAGGTTACCGGGTCCTAGCTAGGGACATGAAAGGCTATG < 41bp 0.37911289860751 0.774157221704639 0.06951347 0.6892747 prediction 0.548314443409277 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27373874 chr8:27373877 nonsynonymous SNV 0.886 1 24 hm5C_associated_SNPs_104502 0 0 1 0 2 EPHX2 chr8:27373837 3'AG 27373837 Downstream 41bp
chr8 27373877 27373877 1 + T G LUAD 27373874 + 27373854 27373894 41 GGCAGGTTACCGGGTCCTAGCTATGGACATGAAAGGCTATG GGCAGGTTACCGGGTCCTAGCTAGGGACATGAAAGGCTATG < 41bp 0.37911289860751 0.774157221704639 0.06951347 0.6892747 prediction 0.548314443409277 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27373874 chr8:27373877 nonsynonymous SNV 0.886 1 24 hm5C_associated_SNPs_104502 0 0 1 0 2 EPHX2 chr8:27373915 5'GT 27373915 Upstream 39bp
chr3 190120217 190120217 1 + C A BLCA 190120213 + 190120193 190120233 41 GTGATGAGTACGATTCCATACTTGCGGAGCATCCCTGTACG GTGATGAGTACGATTCCATACTTGAGGAGCATCCCTGTACG < 41bp 0.37343724164897 0.774115828825372 0.033955514 0.09480545 prediction 0.548231657650745 Functional Gain - CLDN16 ENSG00000113946 CDS Human protein_coding chr3:190120213 chr3:190120217 nonsynonymous SNV 0.034 5 25 hm5C_associated_SNPs_104507 0 0 0 0 2 CLDN16 chr3:190120126 3'AG 190120126 Downstream 92bp
chr3 190120217 190120217 1 + C A BLCA 190120213 + 190120193 190120233 41 GTGATGAGTACGATTCCATACTTGCGGAGCATCCCTGTACG GTGATGAGTACGATTCCATACTTGAGGAGCATCCCTGTACG < 41bp 0.37343724164897 0.774115828825372 0.033955514 0.09480545 prediction 0.548231657650745 Functional Gain - CLDN16 ENSG00000113946 CDS Human protein_coding chr3:190120213 chr3:190120217 nonsynonymous SNV 0.034 5 25 hm5C_associated_SNPs_104507 0 0 0 0 2 CLDN16 chr3:190120228 5'GT 190120228 Upstream 12bp
chr20 39987094 39987094 1 + C A STAD 39987090 + 39987070 39987110 41 CTCCCACAGGATGTCTTTGCCTACCGGCAGGTGGGCCTGCC CTCCCACAGGATGTCTTTGCCTACAGGCAGGTGGGCCTGCC < 41bp 0.359564461611474 0.774110167705541 0.117412776 0.7841941 prediction 0.548220335411082 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39987090 chr20:39987094 synonymous SNV . 0 25 hm5C_associated_SNPs_104508 0 0 1 0 2 LPIN3 chr20:39987079 3'AG 39987079 Downstream 16bp
chr20 39987094 39987094 1 + C A STAD 39987090 + 39987070 39987110 41 CTCCCACAGGATGTCTTTGCCTACCGGCAGGTGGGCCTGCC CTCCCACAGGATGTCTTTGCCTACAGGCAGGTGGGCCTGCC < 41bp 0.359564461611474 0.774110167705541 0.117412776 0.7841941 prediction 0.548220335411082 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39987090 chr20:39987094 synonymous SNV . 0 25 hm5C_associated_SNPs_104508 0 0 1 0 2 LPIN3 chr20:39987182 5'GT 39987182 Upstream 89bp
chr8 21859696 21859696 1 + T A LUAD 21859692 + 21859672 21859712 41 ATACCTCTTCAAGCAGCTGTCACGTAGCACCAAGAAGAGGA ATACCTCTTCAAGCAGCTGTCACGAAGCACCAAGAAGAGGA < 41bp 0.582373865575764 0.856477870403543 0.20555195 0.25148535 prediction 0.548208009655559 Functional Gain - XPO7 ENSG00000130227 CDS Human protein_coding chr8:21859692 chr8:21859696 synonymous SNV . 0 25 hm5C_associated_SNPs_104509 0 0 0 0 2 XPO7 chr8:21859623 3'AG 21859623 Downstream 74bp
chr8 21859696 21859696 1 + T A LUAD 21859692 + 21859672 21859712 41 ATACCTCTTCAAGCAGCTGTCACGTAGCACCAAGAAGAGGA ATACCTCTTCAAGCAGCTGTCACGAAGCACCAAGAAGAGGA < 41bp 0.582373865575764 0.856477870403543 0.20555195 0.25148535 prediction 0.548208009655559 Functional Gain - XPO7 ENSG00000130227 CDS Human protein_coding chr8:21859692 chr8:21859696 synonymous SNV . 0 25 hm5C_associated_SNPs_104509 0 0 0 0 2 XPO7 chr8:21859783 5'GT 21859783 Upstream 88bp
chr6 150290418 150290418 1 + C G STAD 150290417 + 150290397 150290437 41 AGGGATGTGACCATGTTCTTCCAGAAGATTTCACTGGGGGA AGGGATGTGACCATGTTCTTCGAGAAGATTTCACTGGGGGA < 41bp 0.5177387526074 0.791824261871717 0.48242232 0.7901205 prediction 0.548171018528635 Functional Gain - ULBP1 ENSG00000111981 CDS Human protein_coding chr6:150290417 chr6:150290418 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_104512 0 0 0 0 1 ULBP1 chr6:150290496 5'GT 150290496 Upstream 79bp
chr11 3418615 3418615 1 + T A rs550947983 3418611 + 3418591 3418631 41 TGAGAAGTGAGGAGCCCCTCCACCTGGCAGCCACCCCGTCT TGAGAAGTGAGGAGCCCCTCCACCAGGCAGCCACCCCGTCT < 41bp 0.490781133444211 0.774040776109443 0.31910253 0.39233837 prediction 0.548081552218887 Functional Gain - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3418611 chr11:3418615 . . 0 25 hm5C_associated_SNPs_104519 0 0 1 0 1 TSSC2 chr11:3418636 5'GT 3418636 Upstream 22bp
chr19 42218935 42218935 1 + T G LUAD 42218933 + 42218913 42218953 41 TCCAGCAACAACTCCAAACCCGTGGAGGACAAGGATGCTGT TCCAGCAACAACTCCAAACCCGGGGAGGACAAGGATGCTGT < 41bp 0.591423992360117 0.865304853902534 0.22323662 0.93945646 prediction 0.547761723084834 Functional Gain - CEACAM5 ENSG00000105388 CDS Human protein_coding chr19:42218933 chr19:42218935 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_104528 0 0 0 0 1 CEACAM5 chr19:42218890 3'AG 42218890 Downstream 46bp
chr12 65720631 65720631 1 + T G COAD 65720628 + 65720608 65720648 41 TCGTGTAGGGATAAAAAGAACTGTAAGGTGGTCTTTTCCCA TCGTGTAGGGATAAAAAGAACTGGAAGGTGGTCTTTTCCCA < 41bp 0.61921648088816 0.893082886877151 0.5501205 0.3401687 prediction 0.547732811977982 Functional Gain - MSRB3 ENSG00000174099 CDS Human protein_coding chr12:65720628 chr12:65720631 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_104531 0 0 1 0 1 MSRB3 chr12:65720714 5'GT 65720714 Upstream 84bp
chr5 38427169 38427169 1 + C A UCEC 38427165 + 38427145 38427185 41 TCTGAGATCTTACGCTGCAACTCCCTGGCCACTGGAGCCCC TCTGAGATCTTACGCTGCAACTCCATGGCCACTGGAGCCCC < 41bp 0.334075145934689 0.773852332758089 0.1258797 0.9694035 prediction 0.547704665516177 Functional Gain - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38427165 chr5:38427169 synonymous SNV . 0 25 hm5C_associated_SNPs_104532 0 0 0 0 1 EGFLAM chr5:38427111 3'AG 38427111 Downstream 59bp
chr6 159029451 159029451 1 + C A PRAD 159029447 + 159029427 159029467 41 TTTCAGTCCATGTTCCTGTGCGCCCTGCTGCTCTTCTGGCT TTTCAGTCCATGTTCCTGTGCGCCATGCTGCTCTTCTGGCT < 41bp 0.348438831646971 0.773849658170753 0.023388118 0.013145 prediction 0.547699316341506 Functional Gain - TMEM181 ENSG00000146433 CDS Human protein_coding chr6:159029447 chr6:159029451 nonsynonymous SNV 0.238 4 25 hm5C_associated_SNPs_104533 0 0 1 0 2 TMEM181 chr6:159029365 3'AG 159029365 Downstream 87bp
chr6 159029451 159029451 1 + C A PRAD 159029447 + 159029427 159029467 41 TTTCAGTCCATGTTCCTGTGCGCCCTGCTGCTCTTCTGGCT TTTCAGTCCATGTTCCTGTGCGCCATGCTGCTCTTCTGGCT < 41bp 0.348438831646971 0.773849658170753 0.023388118 0.013145 prediction 0.547699316341506 Functional Gain - TMEM181 ENSG00000146433 CDS Human protein_coding chr6:159029447 chr6:159029451 nonsynonymous SNV 0.238 4 25 hm5C_associated_SNPs_104533 0 0 1 0 2 TMEM181 chr6:159029495 5'GT 159029495 Upstream 45bp
chr2 55096463 55096463 1 + C A UCEC 55096459 + 55096439 55096479 41 GGGCACGATGACGACATTCTCAGCCTGACCATCCATCCAGT GGGCACGATGACGACATTCTCAGCATGACCATCCATCCAGT < 41bp 0.371596112068018 0.773841916403566 0.9025883 0.8488246 prediction 0.547683832807132 Functional Gain - EML6 ENSG00000214595 CDS Human protein_coding chr2:55096459 chr2:55096463 nonsynonymous SNV 0.957 2 25 hm5C_associated_SNPs_104534 0 0 0 0 1 EML6 chr2:55096504 5'GT 55096504 Upstream 42bp
chr16 57449110 57449110 1 + T G LUSC 57449108 + 57449088 57449128 41 GACTGCTCCAGGGATGCCATCGTGTAAGTCCCCCTGGCTCC GACTGCTCCAGGGATGCCATCGGGTAAGTCCCCCTGGCTCC < 41bp 0.602277232943713 0.876108546323466 0.6930182 0.9073567 prediction 0.547662626759505 Functional Gain - CCL17 ENSG00000102970 CDS Human protein_coding chr16:57449108 chr16:57449110 nonsynonymous SNV 0.419 4 23 hm5C_associated_SNPs_104535 0 0 0 0 1 CCL17 chr16:57449110 5'GT 57449110 Upstream 1bp
chr3 11348463 11348463 1 + T G STAD 11348460 + 11348440 11348480 41 GCTGCCCAGCTATTGGAACACTGTATAACACCAACACACTC GCTGCCCAGCTATTGGAACACTGGATAACACCAACACACTC < 41bp 0.618441053317035 0.89226574309575 0.24474669 0.18623567 prediction 0.547649379557429 Functional Gain - ATG7 ENSG00000197548 CDS Human protein_coding chr3:11348460 chr3:11348463 nonsynonymous SNV 0.258 0 24 hm5C_associated_SNPs_104537 0 0 1 0 2 ATG7 chr3:11348417 3'AG 11348417 Downstream 47bp
chr3 11348463 11348463 1 + T G STAD 11348460 + 11348440 11348480 41 GCTGCCCAGCTATTGGAACACTGTATAACACCAACACACTC GCTGCCCAGCTATTGGAACACTGGATAACACCAACACACTC < 41bp 0.618441053317035 0.89226574309575 0.24474669 0.18623567 prediction 0.547649379557429 Functional Gain - ATG7 ENSG00000197548 CDS Human protein_coding chr3:11348460 chr3:11348463 nonsynonymous SNV 0.258 0 24 hm5C_associated_SNPs_104537 0 0 1 0 2 ATG7 chr3:11348534 5'GT 11348534 Upstream 72bp
chr3 44442771 44442771 1 + T A LIHC 44442767 + 44442747 44442787 41 CTCTGTGATCCAGCAAATCTCCAGTGGTTTATTCTCACCAA CTCTGTGATCCAGCAAATCTCCAGAGGTTTATTCTCACCAA < 41bp 0.561910203270385 0.835728855897368 0.57532835 0.91858566 prediction 0.547637305253967 Functional Gain - TCAIM ENSG00000179152 CDS Human protein_coding chr3:44442767 chr3:44442771 nonsynonymous SNV 0.727 1 25 hm5C_associated_SNPs_104538 0 0 0 0 1 TCAIM chr3:44442695 3'AG 44442695 Downstream 77bp
chr1 196883752 196883752 1 + T A CESC 196883748 + 196883728 196883768 41 AATCAGTTATGGAAACACCACAGGTTCCATAGTGTGTGGTG AATCAGTTATGGAAACACCACAGGATCCATAGTGTGTGGTG < 41bp 0.535747635018718 0.809544763470191 0.3780121 0.5251285 prediction 0.547594256902945 Functional Gain - CFHR4 ENSG00000134365 CDS Human protein_coding chr1:196883748 chr1:196883752 synonymous SNV . 0 25 hm5C_associated_SNPs_104541 0 0 0 0 1 CFHR4 chr1:196883801 5'GT 196883801 Upstream 50bp
chr1 192548282 192548282 1 + C G HNSC 192548281 + 192548261 192548301 41 TTTTAGATCAATATTGACTTCCGCACTCGAGAATCTACAGC TTTTAGATCAATATTGACTTCGGCACTCGAGAATCTACAGC < 41bp 0.488944132611619 0.773790518532651 0.022718012 0.03856972 prediction 0.547581037065302 Functional Gain - RGS1 ENSG00000090104 CDS Human protein_coding chr1:192548281 chr1:192548282 nonsynonymous SNV 0.843 0 22 hm5C_associated_SNPs_104543 0 0 0 0 1 RGS1 chr1:192548267 3'AG 192548267 Downstream 16bp
chr16 3198392 3198392 1 + C G rs73492472 3198391 + 3198371 3198411 41 CATCCTGACGGTCTACTCAGCCGCAGAGGGTAAGGAGATGG CATCCTGACGGTCTACTCAGCGGCAGAGGGTAAGGAGATGG < 41bp 0.553536722419483 0.827322842119588 0.19062322 0.35427672 prediction 0.54757223940021 Functional Gain - CASP16P ENSG00000228146 CDS Human transcribed_unprocessed_pseudogene chr16:3198391 chr16:3198392 synonymous SNV . 0 22 hm5C_associated_SNPs_104544 0 0 0 0 1 CASP16P chr16:3198325 3'AG 3198325 Downstream 68bp
chr2 136537941 136537941 1 + C A rs2304602 136537937 + 136537917 136537957 41 ACCCCCAAACCCTGCATCATCTAGCAAATCAGAAAAAAGGT ACCCCCAAACCCTGCATCATCTAGAAAATCAGAAAAAAGGT < 41bp 0.362849659772213 0.773772499220542 0.07424909 0.07030055 prediction 0.547544998441083 Functional Gain - UBXN4 ENSG00000144224 CDS Human protein_coding chr2:136537937 chr2:136537941 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_104545 0 0 0 0 1 UBXN4 chr2:136537955 5'GT 136537955 Upstream 15bp
chr4 69973966 69973966 1 + T A LAML 69973962 + 69973942 69973982 41 TCACATGAAGGCCAGGGGAGCAGCTGTTAGAGTGGACTTCA TCACATGAAGGCCAGGGGAGCAGCAGTTAGAGTGGACTTCA < 41bp 0.555301057867999 0.829042044714831 0.9012422 0.45474592 prediction 0.547481973693664 Functional Gain - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69973962 chr4:69973966 synonymous SNV . 0 25 hm5C_associated_SNPs_104548 0 0 1 0 1 UGT2B7 chr4:69974040 5'GT 69974040 Upstream 75bp
chr15 69652466 69652466 1 + C G BRCA 69652465 + 69652445 69652485 41 TGTTTAGCATAGACCAGATACCCCAGGTATGTGCTCTATTG TGTTTAGCATAGACCAGATACGCCAGGTATGTGCTCTATTG < 41bp 0.482141154849135 0.773738599743705 0.085974514 0.43775916 prediction 0.547477199487409 Functional Gain - PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69652465 chr15:69652466 nonsynonymous SNV 0.069 4 22 hm5C_associated_SNPs_104549 0 0 0 0 1 PAQR5 chr15:69652470 5'GT 69652470 Upstream 5bp
chr11 124857980 124857980 1 + C G LUAD 124857979 + 124857959 124857999 41 CTGCATGTTCTCTCCAACGACCAGAATATTCTACCCAAATG CTGCATGTTCTCTCCAACGACGAGAATATTCTACCCAAATG < 41bp 0.486342597139485 0.773711265499944 0.20371455 0.6450983 prediction 0.547422530999888 Functional Gain - CCDC15 ENSG00000149548 CDS Human protein_coding chr11:124857979 chr11:124857980 nonsynonymous SNV 0.052 1 22 hm5C_associated_SNPs_104550 0 0 1 0 1 CCDC15 chr11:124858030 5'GT 124858030 Upstream 51bp
chr2 219267126 219267126 1 + C G HNSC 219267125 + 219267105 219267145 41 GAGATTGATGGGGTGGTCCACCAGGTGAGGGCCAGGAAGAG GAGATTGATGGGGTGGTCCACGAGGTGAGGGCCAGGAAGAG < 41bp 0.46499936975612 0.773709388123712 0.7720356 0.78699505 prediction 0.547418776247423 Functional Gain - CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219267125 chr2:219267126 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_104551 0 0 1 0 2 CTDSP1 chr2:219267072 3'AG 219267072 Downstream 55bp
chr2 219267126 219267126 1 + C G HNSC 219267125 + 219267105 219267145 41 GAGATTGATGGGGTGGTCCACCAGGTGAGGGCCAGGAAGAG GAGATTGATGGGGTGGTCCACGAGGTGAGGGCCAGGAAGAG < 41bp 0.46499936975612 0.773709388123712 0.7720356 0.78699505 prediction 0.547418776247423 Functional Gain - CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219267125 chr2:219267126 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_104551 0 0 1 0 2 CTDSP1 chr2:219267128 5'GT 219267128 Upstream 3bp
chr1 150471056 150471056 1 + C G rs116476409 150471055 + 150471035 150471075 41 CTTTGGGGCTCTACACCGGGCCGAAGCCTCTGGTGGTCTGG CTTTGGGGCTCTACACCGGGCGGAAGCCTCTGGTGGTCTGG < 41bp 0.464118462131698 0.773678717113681 0.25827497 0.5480741 prediction 0.547357434227361 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150471055 chr1:150471056 synonymous SNV . 0 22 hm5C_associated_SNPs_104555 0 0 1 0 2 TARS2 chr1:150470978 3'AG 150470978 Downstream 79bp
chr1 150471056 150471056 1 + C G rs116476409 150471055 + 150471035 150471075 41 CTTTGGGGCTCTACACCGGGCCGAAGCCTCTGGTGGTCTGG CTTTGGGGCTCTACACCGGGCGGAAGCCTCTGGTGGTCTGG < 41bp 0.464118462131698 0.773678717113681 0.25827497 0.5480741 prediction 0.547357434227361 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150471055 chr1:150471056 synonymous SNV . 0 22 hm5C_associated_SNPs_104555 0 0 1 0 2 TARS2 chr1:150471140 5'GT 150471140 Upstream 85bp
chr1 43665119 43665119 1 + T A LAML 43665115 + 43665095 43665135 41 CAGTCAATGGAAATGTGATTCACGTTTACACCACCACGAGC CAGTCAATGGAAATGTGATTCACGATTACACCACCACGAGC < 41bp 0.576274012637307 0.849914639651736 0.2305434 0.20935744 prediction 0.547281254028859 Functional Gain - CFAP57 ENSG00000243710 CDS Human protein_coding chr1:43665115 chr1:43665119 nonsynonymous SNV 0.989 1 25 hm5C_associated_SNPs_104556 0 0 0 0 1 CFAP57 chr1:43665174 5'GT 43665174 Upstream 56bp
chr3 44945443 44945443 1 + C A rs113204640 44945439 + 44945419 44945459 41 CTGCCCAAGGGCTACGACGGCTGGCAGGCTGTGGACGCAAC CTGCCCAAGGGCTACGACGGCTGGAAGGCTGTGGACGCAAC < 41bp 0.633625950842446 0.907252958819005 0.08830103 0.24108747 prediction 0.547254015953119 Functional Gain - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44945439 chr3:44945443 nonsynonymous SNV 0.332 4 25 hm5C_associated_SNPs_104557 0 0 0 0 1 TGM4 chr3:44945376 3'AG 44945376 Downstream 68bp
chr20 42972068 42972068 1 + T G UCEC 42972066 + 42972046 42972086 41 CCTGGTCTGAGGAGAAGTGGCATTACTTGTTTCCGGCCCCA CCTGGTCTGAGGAGAAGTGGCAGTACTTGTTTCCGGCCCCA < 41bp 0.424915265056976 0.773583409324826 0.30263248 0.5759919 prediction 0.547166818649652 Functional Gain - R3HDML ENSG00000101074 CDS Human protein_coding chr20:42972066 chr20:42972068 nonsynonymous SNV 0.033 2 23 hm5C_associated_SNPs_104566 0 0 0 0 2 R3HDML chr20:42972017 3'AG 42972017 Downstream 52bp
chr20 42972068 42972068 1 + T G UCEC 42972066 + 42972046 42972086 41 CCTGGTCTGAGGAGAAGTGGCATTACTTGTTTCCGGCCCCA CCTGGTCTGAGGAGAAGTGGCAGTACTTGTTTCCGGCCCCA < 41bp 0.424915265056976 0.773583409324826 0.30263248 0.5759919 prediction 0.547166818649652 Functional Gain - R3HDML ENSG00000101074 CDS Human protein_coding chr20:42972066 chr20:42972068 nonsynonymous SNV 0.033 2 23 hm5C_associated_SNPs_104566 0 0 0 0 2 R3HDML chr20:42972149 5'GT 42972149 Upstream 82bp
chr10 88780132 88780132 1 + C G rs10219136 88780131 + 88780111 88780151 41 CGAAGGCCTGGCCCACCGCACCGAGAAGGCCACCGAGGGAG CGAAGGCCTGGCCCACCGCACGGAGAAGGCCACCGAGGGAG < 41bp 0.462285519189839 0.773568865311314 0.34530103 0.866257 prediction 0.547137730622628 Functional Gain - FAM25A ENSG00000188100 CDS Human protein_coding chr10:88780131 chr10:88780132 synonymous SNV . 0 22 hm5C_associated_SNPs_104568 0 0 0 0 1 FAM25A chr10:88780154 5'GT 88780154 Upstream 23bp
chr15 101549251 101549251 1 + C G rs184008590 101549247 + 101549227 101549267 41 GCTGCCTGGCGTGCAGTCATCGGACGAAATCATCTGTTCCA GCTGCCTGGCGTGCAGTCATCGGAGGAAATCATCTGTTCCA < 41bp 0.487365781007487 0.773544400752102 0.9239582 0.9496617 prediction 0.547088801504204 Functional Gain - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101549247 chr15:101549251 nonsynonymous SNV 0.363 1 25 hm5C_associated_SNPs_104571 0 0 0 0 1 LRRK1 chr15:101549268 5'GT 101549268 Upstream 18bp
chr19 36640548 36640548 1 + C G SKCM 36640547 + 36640527 36640567 41 AACATCCAGGAGGTAAGGACCCCCATATTGGGGTATGGGTG AACATCCAGGAGGTAAGGACCGCCATATTGGGGTATGGGTG < 41bp 0.472071015438519 0.773533373886026 0.6031412 0.93581027 prediction 0.547066747772053 Functional Gain - CAPNS1 ENSG00000126247 CDS Human protein_coding chr19:36640547 chr19:36640548 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_104573 0 0 1 0 1 CAPNS1 chr19:36640480 3'AG 36640480 Downstream 69bp
chr7 141443442 141443442 1 + T G OV 141443439 + 141443419 141443459 41 GGAAGGAAAAAATCCAGTCACAATATTTTCTCTAGCAACTA GGAAGGAAAAAATCCAGTCACAAGATTTTCTCTAGCAACTA < 41bp 0.623566466039372 0.897098790320407 0.37272054 0.67258346 prediction 0.547064648562069 Functional Gain - SSBP1 ENSG00000106028 CDS Human protein_coding chr7:141443439 chr7:141443442 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_104574 0 0 1 0 2 SSBP1 chr7:141443361 3'AG 141443361 Downstream 82bp
chr7 141443442 141443442 1 + T G OV 141443439 + 141443419 141443459 41 GGAAGGAAAAAATCCAGTCACAATATTTTCTCTAGCAACTA GGAAGGAAAAAATCCAGTCACAAGATTTTCTCTAGCAACTA < 41bp 0.623566466039372 0.897098790320407 0.37272054 0.67258346 prediction 0.547064648562069 Functional Gain - SSBP1 ENSG00000106028 CDS Human protein_coding chr7:141443439 chr7:141443442 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_104574 0 0 1 0 2 SSBP1 chr7:141443501 5'GT 141443501 Upstream 60bp
chr18 32682068 32682068 1 + T A rs111906099 32682064 + 32682044 32682084 41 TGCAATTCCTCCTCCTGACCCTGGTGAACAGATCTTCAACC TGCAATTCCTCCTCCTGACCCTGGAGAACAGATCTTCAACC < 41bp 0.578689400152314 0.852156460343285 0.185204 0.13826731 prediction 0.546934120381943 Functional Gain - MAPRE2 ENSG00000166974 CDS Human protein_coding chr18:32682064 chr18:32682068 synonymous SNV . 0 25 hm5C_associated_SNPs_104579 0 0 1 0 1 MAPRE2 chr18:32682123 5'GT 32682123 Upstream 56bp
chr18 2885101 2885101 1 + C A LUSC 2885097 + 2885077 2885117 41 CCCGTGAAGACCCTCCGCCCCACGCCGGCTCGGCCTCGAAA CCCGTGAAGACCCTCCGCCCCACGACGGCTCGGCCTCGAAA < 41bp 0.352797313326442 0.7734667968459 0.020757645 0.023011476 prediction 0.546933593691799 Functional Gain - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2885097 chr18:2885101 nonsynonymous SNV 0.026 0 25 hm5C_associated_SNPs_104580 0 0 0 0 1 EMILIN2 chr18:2885137 5'GT 2885137 Upstream 37bp
chr10 82126541 82126541 1 + C G rs36027713 82126540 + 82126520 82126560 41 CCTTGAAGCAGGAATTCCTGCCAGGTACTTCCAGTCTGATT CCTTGAAGCAGGAATTCCTGCGAGGTACTTCCAGTCTGATT < 41bp 0.542100782081688 0.815466376022982 0.76843107 0.900345 prediction 0.546731187882588 Functional Gain - DYDC2 ENSG00000133665 CDS Human protein_coding chr10:82126540 chr10:82126541 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_104589 0 0 0 0 1 DYDC2 chr10:82126444 3'AG 82126444 Downstream 98bp
chr17 9497556 9497556 1 + C G STAD 9497552 + 9497532 9497572 41 AAGAGAGATGCCATCTGTGGCAGCCCTGCAGCCGGCCTCAA AAGAGAGATGCCATCTGTGGCAGCGCTGCAGCCGGCCTCAA < 41bp 0.477935084351635 0.77335106937484 0.28220278 0.43939495 prediction 0.546702138749681 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9497552 chr17:9497556 nonsynonymous SNV 0.515 2 25 hm5C_associated_SNPs_104590 0 0 0 0 1 CFAP52 chr17:9497638 5'GT 9497638 Upstream 83bp
chrX 118151522 118151522 1 + T A GBM 118151518 + 118151498 118151538 41 ATGAACCCGAATGGCCCAGCCTGGTGCTGGTGGATGTTAGC ATGAACCCGAATGGCCCAGCCTGGAGCTGGTGGATGTTAGC < 41bp 0.468757125312164 0.773333977670547 0.22158596 0.3767954 prediction 0.546667955341094 Functional Gain - LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118151518 chrX:118151522 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_104595 0 0 0 0 1 LONRF3 chrX:118151498 3'AG 118151498 Downstream 25bp
chr5 178373429 178373429 1 + C A LUSC 178373425 + 178373405 178373445 41 GAGTGGGGGCAGCTGAGCCCCGCCCAGAGGGCCCTGTACAG GAGTGGGGGCAGCTGAGCCCCGCCAAGAGGGCCCTGTACAG < 41bp 0.6517789270079 0.925084395291866 0.02118811 0.62863386 prediction 0.546610936567932 Functional Gain - ZNF454 ENSG00000178187 CDS Human protein_coding chr5:178373425 chr5:178373429 nonsynonymous SNV 0.029 3 25 hm5C_associated_SNPs_104598 0 0 0 0 2 ZNF454 chr5:178373360 3'AG 178373360 Downstream 70bp
chr5 178373429 178373429 1 + C A LUSC 178373425 + 178373405 178373445 41 GAGTGGGGGCAGCTGAGCCCCGCCCAGAGGGCCCTGTACAG GAGTGGGGGCAGCTGAGCCCCGCCAAGAGGGCCCTGTACAG < 41bp 0.6517789270079 0.925084395291866 0.02118811 0.62863386 prediction 0.546610936567932 Functional Gain - ZNF454 ENSG00000178187 CDS Human protein_coding chr5:178373425 chr5:178373429 nonsynonymous SNV 0.029 3 25 hm5C_associated_SNPs_104598 0 0 0 0 2 ZNF454 chr5:178373486 5'GT 178373486 Upstream 58bp
chr11 44148448 44148448 1 + C G SKCM 44148447 + 44148427 44148467 41 TGTTACAAGCTGGCTGTGTCCCGGTTGTCATTGCAGACTCC TGTTACAAGCTGGCTGTGTCCGGGTTGTCATTGCAGACTCC < 41bp 0.46838187481132 0.773280543127196 0.16078284 0.7304201 prediction 0.546561086254391 Functional Gain - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44148447 chr11:44148448 nonsynonymous SNV 0.909 5 22 hm5C_associated_SNPs_104600 0 0 1 0 2 EXT2 chr11:44148366 3'AG 44148366 Downstream 83bp
chr11 44148448 44148448 1 + C G SKCM 44148447 + 44148427 44148467 41 TGTTACAAGCTGGCTGTGTCCCGGTTGTCATTGCAGACTCC TGTTACAAGCTGGCTGTGTCCGGGTTGTCATTGCAGACTCC < 41bp 0.46838187481132 0.773280543127196 0.16078284 0.7304201 prediction 0.546561086254391 Functional Gain - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44148447 chr11:44148448 nonsynonymous SNV 0.909 5 22 hm5C_associated_SNPs_104600 0 0 1 0 2 EXT2 chr11:44148505 5'GT 44148505 Upstream 58bp
chr16 29825970 29825970 1 + C G rs201814968 29825969 + 29825949 29825989 41 TGTATAAGTGAGGGGCTCTGCCCCGCATCCCAAGACTTTTC TGTATAAGTGAGGGGCTCTGCGCCGCATCCCAAGACTTTTC < 41bp 0.473473259014645 0.773273398294431 0.05758971 0.08829424 prediction 0.546546796588863 Functional Gain - PRRT2 ENSG00000261962 ncRNA_intronic Human protein_coding chr16:29825969 chr16:29825970 . . 0 22 hm5C_associated_SNPs_104602 0 0 0 0 1 PRRT2 chr16:29825949 3'AG 29825949 Downstream 22bp
chr22 37326508 37326508 1 + C A LUAD 37326504 + 37326484 37326524 41 GGAGGTGAGGAAGGAGGTGGCCAGCTCGGTCTCCTTTGGCC GGAGGTGAGGAAGGAGGTGGCCAGATCGGTCTCCTTTGGCC < 41bp 0.376863082035192 0.773266579752958 0.8386899 0.86244965 prediction 0.546533159505917 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37326504 chr22:37326508 nonsynonymous SNV 0.025 1 25 hm5C_associated_SNPs_104603 0 0 0 0 1 CSF2RB chr22:37326417 3'AG 37326417 Downstream 92bp
chr10 82126541 82126541 1 + C G rs36027713 82126537 + 82126517 82126557 41 AGGCCTTGAAGCAGGAATTCCTGCCAGGTACTTCCAGTCTG AGGCCTTGAAGCAGGAATTCCTGCGAGGTACTTCCAGTCTG < 41bp 0.506338661583995 0.779596935167203 0.14985958 0.4570704 prediction 0.546516547166416 Functional Gain - DYDC2 ENSG00000133665 CDS Human protein_coding chr10:82126537 chr10:82126541 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_104604 0 0 0 0 1 DYDC2 chr10:82126444 3'AG 82126444 Downstream 98bp
chr11 125237779 125237779 1 + C A UCEC 125237775 + 125237755 125237795 41 CCCAGCCACCCTCCAAGGCCCAGGCTGTCCACATCTCTGCC CCCAGCCACCCTCCAAGGCCCAGGATGTCCACATCTCTGCC < 41bp 0.373798859041491 0.773242883497623 0.066012084 0.07785675 prediction 0.546485766995247 Functional Gain - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125237775 chr11:125237779 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_104607 0 0 0 0 1 PKNOX2 chr11:125237742 3'AG 125237742 Downstream 38bp
chr2 95691579 95691579 1 + T A rs528873033 95691575 + 95691555 95691595 41 GACGGGGGGCAGCACCCTGCCCAGTGGCTTCTCGGTCTTCA GACGGGGGGCAGCACCCTGCCCAGAGGCTTCTCGGTCTTCA < 41bp 0.535093482456931 0.808333110591783 0.027798891 0.21977893 prediction 0.546479256269704 Functional Gain - MAL ENSG00000172005 CDS Human protein_coding chr2:95691575 chr2:95691579 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_104609 0 0 0 0 1 MAL chr2:95691630 5'GT 95691630 Upstream 52bp
chr2 220095054 220095054 1 + C A GBM 220095050 + 220095030 220095070 41 TGACCTCAGCGCGGATGCTCCGGTCTTTCAGGGCCTGAGCC TGACCTCAGCGCGGATGCTCCGGTATTTCAGGGCCTGAGCC < 41bp 0.404325919578163 0.773223683250592 0.7692579 0.872337 prediction 0.546447366501183 Functional Gain - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220095050 chr2:220095054 synonymous SNV . 0 25 hm5C_associated_SNPs_104611 0 0 1 0 2 ANKZF1 chr2:220095072 5'GT 220095072 Upstream 19bp
chr2 220095054 220095054 1 + C A GBM 220095050 + 220095030 220095070 41 TGACCTCAGCGCGGATGCTCCGGTCTTTCAGGGCCTGAGCC TGACCTCAGCGCGGATGCTCCGGTATTTCAGGGCCTGAGCC < 41bp 0.404325919578163 0.773223683250592 0.7692579 0.872337 prediction 0.546447366501183 Functional Gain - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220095050 chr2:220095054 synonymous SNV . 0 25 hm5C_associated_SNPs_104611 0 0 1 0 2 ANKZF1 chr2:220095127 5'GT 220095127 Upstream 74bp
chr15 40498435 40498435 1 + C A UCEC 40498431 + 40498411 40498451 41 GAGCGAGGATGCCATTATCACAGGCTTCAGAAATGTAACAA GAGCGAGGATGCCATTATCACAGGATTCAGAAATGTAACAA < 41bp 0.636622395993218 0.909815511987537 0.9184467 0.91767335 prediction 0.546386231988639 Functional Gain - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40498431 chr15:40498435 synonymous SNV . 0 25 hm5C_associated_SNPs_104614 0 0 1 0 1 BUB1B chr15:40498385 3'AG 40498385 Downstream 51bp
chr1 65614154 65614154 1 + T A rs17853973 65614150 + 65614130 65614170 41 CCCGGCTCGGGCAAGGGCACCGTGTGCCAGAGGATCGCCCA CCCGGCTCGGGCAAGGGCACCGTGAGCCAGAGGATCGCCCA < 41bp 0.472419825706163 0.773185022207393 0.13724062 0.08995339 prediction 0.546370044414786 Functional Gain - AK4 ENSG00000162433 CDS Human protein_coding chr1:65614150 chr1:65614154 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_104615 0 0 0 0 1 AK4 chr1:65614235 5'GT 65614235 Upstream 82bp
chr20 45355518 45355518 1 + T C SKCM 45355516 + 45355496 45355536 41 ACCCTAGTGACCTGGCTTGTCCTCAGCGAGATCTACCCTGT ACCCTAGTGACCTGGCTTGTCCCCAGCGAGATCTACCCTGT < 41bp 0.495723476290282 0.773158285642817 0.05787313 0.04933557 prediction 0.546316571285635 Functional Gain - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45355516 chr20:45355518 nonsynonymous SNV 0.951 5 23 hm5C_associated_SNPs_104616 0 0 0 0 1 SLC2A10 chr20:45355503 3'AG 45355503 Downstream 16bp
chr22 42422816 42422816 1 + C A rs569421612 42422812 + 42422792 42422832 41 TGCAGGATATGGAGCCCCACCTCCCGGATACGGAGCCCCAC TGCAGGATATGGAGCCCCACCTCCAGGATACGGAGCCCCAC < 41bp 0.646310566525783 0.919464580017542 0.16791523 0.9249238 prediction 0.546308026983519 Functional Gain - WBP2NL ENSG00000183066 CDS Human protein_coding chr22:42422812 chr22:42422816 synonymous SNV . 0 25 hm5C_associated_SNPs_104617 0 0 0 0 1 WBP2NL chr22:42422770 3'AG 42422770 Downstream 47bp
chr1 27660674 27660674 1 + C A MESO 27660670 + 27660650 27660690 41 CTGCTGTGACAACTGCCACTCGCACGTGGCATTGGCCCTGA CTGCTGTGACAACTGCCACTCGCAAGTGGCATTGGCCCTGA < 41bp 0.637015510179581 0.910151438855692 0.03486091 0.15464589 prediction 0.546271857352222 Functional Gain - TMEM222 ENSG00000186501 CDS Human protein_coding chr1:27660670 chr1:27660674 nonsynonymous SNV 0.584 4 25 hm5C_associated_SNPs_104619 0 0 1 0 2 TMEM222 chr1:27660642 3'AG 27660642 Downstream 33bp
chr1 27660674 27660674 1 + C A MESO 27660670 + 27660650 27660690 41 CTGCTGTGACAACTGCCACTCGCACGTGGCATTGGCCCTGA CTGCTGTGACAACTGCCACTCGCAAGTGGCATTGGCCCTGA < 41bp 0.637015510179581 0.910151438855692 0.03486091 0.15464589 prediction 0.546271857352222 Functional Gain - TMEM222 ENSG00000186501 CDS Human protein_coding chr1:27660670 chr1:27660674 nonsynonymous SNV 0.584 4 25 hm5C_associated_SNPs_104619 0 0 1 0 2 TMEM222 chr1:27660772 5'GT 27660772 Upstream 99bp
chr1 39976918 39976918 1 + C G rs555934078 39976917 + 39976897 39976937 41 GCTTTGACCTGACCCAGATCCCGGCTGGGGAGGCGGTCACA GCTTTGACCTGACCCAGATCCGGGCTGGGGAGGCGGTCACA < 41bp 0.462479341525076 0.773133062356799 0.8731344 0.9098753 prediction 0.546266124713598 Functional Gain - BMP8A ENSG00000183682 CDS Human protein_coding chr1:39976917 chr1:39976918 nonsynonymous SNV 0.535 1 22 hm5C_associated_SNPs_104620 0 0 0 0 1 BMP8A chr1:39976846 3'AG 39976846 Downstream 73bp
chr17 4488207 4488207 1 + C G rs538037200 4488206 + 4488186 4488226 41 ACTCCCGGCACGCCCAGCCCCCCGCCCGCGCCCGGGGTTCC ACTCCCGGCACGCCCAGCCCCGCGCCCGCGCCCGGGGTTCC < 41bp 0.488726592129729 0.773115642672749 0.07259837 0.3057363 prediction 0.546231285345498 Functional Gain - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4488206 chr17:4488207 nonsynonymous SNV 0.107 3 22 hm5C_associated_SNPs_104621 0 0 0 0 1 SMTNL2 chr17:4488299 5'GT 4488299 Upstream 93bp
chr18 28968887 28968887 1 + T C LAML 28968885 + 28968865 28968905 41 GTGAAGATTTAGAAAGGCCTCTTGAGCTTAGAGTCAAAGTT GTGAAGATTTAGAAAGGCCTCTCGAGCTTAGAGTCAAAGTT < 41bp 0.492879140991794 0.773108691272285 0.018288732 0.15133047 prediction 0.546217382544571 Functional Gain - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28968885 chr18:28968887 synonymous SNV . 0 23 hm5C_associated_SNPs_104622 0 0 0 0 2 DSG4 chr18:28968837 3'AG 28968837 Downstream 51bp
chr18 28968887 28968887 1 + T C LAML 28968885 + 28968865 28968905 41 GTGAAGATTTAGAAAGGCCTCTTGAGCTTAGAGTCAAAGTT GTGAAGATTTAGAAAGGCCTCTCGAGCTTAGAGTCAAAGTT < 41bp 0.492879140991794 0.773108691272285 0.018288732 0.15133047 prediction 0.546217382544571 Functional Gain - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28968885 chr18:28968887 synonymous SNV . 0 23 hm5C_associated_SNPs_104622 0 0 0 0 2 DSG4 chr18:28968981 5'GT 28968981 Upstream 95bp
chr22 46693337 46693337 1 + C G rs201036893 46693333 + 46693313 46693353 41 GGCCGCGATGAGCCTTCAGCCTGCCGGGCAGGGGACGTGAA GGCCGCGATGAGCCTTCAGCCTGCGGGGCAGGGGACGTGAA < 41bp 0.535751191623935 0.808852227615256 0.13350305 0.3207606 prediction 0.546202071982643 Functional Gain - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46693333 chr22:46693337 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_104624 0 0 1 0 1 GTSE1 chr22:46693277 3'AG 46693277 Downstream 61bp
chr4 71232423 71232423 1 + T A UCEC 71232419 + 71232399 71232439 41 ACCTGGACCACTGGCTCCTCCTCCTCCACCATGTTTTCCTT ACCTGGACCACTGGCTCCTCCTCCACCACCATGTTTTCCTT < 41bp 0.451854928892718 0.773098148138164 0.13783354 0.9140565 prediction 0.546196296276327 Functional Gain - SMR3A ENSG00000109208 CDS Human protein_coding chr4:71232419 chr4:71232423 synonymous SNV . 0 25 hm5C_associated_SNPs_104625 0 0 0 0 1 SMR3A chr4:71232361 3'AG 71232361 Downstream 63bp
chrX 105161622 105161622 1 + C A COAD 105161618 + 105161598 105161638 41 GCTCAGAAGCCCATTGACATCAGACAAAGGAGTTCGCAAAA GCTCAGAAGCCCATTGACATCAGAAAAAGGAGTTCGCAAAA < 41bp 0.36516180083308 0.773085629869776 0.10779965 0.19949579 prediction 0.546171259739551 Functional Gain - NRK ENSG00000123572 CDS Human protein_coding chrX:105161618 chrX:105161622 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_104628 0 0 0 0 1 NRK chrX:105161664 5'GT 105161664 Upstream 43bp
chr21 35341600 35341600 1 + C G rs57661989 35341596 + 35341576 35341616 41 GACGCCCAGCTCAGCAGAGACTGGCTACGGCAATCACTCAG GACGCCCAGCTCAGCAGAGACTGGGTACGGCAATCACTCAG < 41bp 0.524028501317772 0.797111593450551 0.14066416 0.53354776 prediction 0.546166184265557 Functional Gain - LINC00649 ENSG00000237945 ncRNA_exonic Human antisense chr21:35341596 chr21:35341600 . . 0 25 hm5C_associated_SNPs_104629 0 0 0 0 1 LINC00649 chr21:35341538 3'AG 35341538 Downstream 63bp
chr2 33482545 33482545 1 + C G LUAD 33482544 + 33482524 33482564 41 GTGGAGGCCCTGACCTTCTCCCGGGAACACGGGCCAGGAGT GTGGAGGCCCTGACCTTCTCCGGGGAACACGGGCCAGGAGT < 41bp 0.530550112199 0.803617191025662 0.8782184 0.9165549 prediction 0.546134157653325 Functional Gain - LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33482544 chr2:33482545 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_104630 0 0 0 0 2 LTBP1 chr2:33482510 3'AG 33482510 Downstream 36bp
chr2 33482545 33482545 1 + C G LUAD 33482544 + 33482524 33482564 41 GTGGAGGCCCTGACCTTCTCCCGGGAACACGGGCCAGGAGT GTGGAGGCCCTGACCTTCTCCGGGGAACACGGGCCAGGAGT < 41bp 0.530550112199 0.803617191025662 0.8782184 0.9165549 prediction 0.546134157653325 Functional Gain - LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33482544 chr2:33482545 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_104630 0 0 0 0 2 LTBP1 chr2:33482578 5'GT 33482578 Upstream 34bp
chr19 30102776 30102776 1 + C G LUAD 30102772 + 30102752 30102792 41 TTCTGACTTTGCTGCAGATACAGCCTTTTCCTCCCTCTCCA TTCTGACTTTGCTGCAGATACAGCGTTTTCCTCCCTCTCCA < 41bp 0.488551242960953 0.773049083468108 0.012382984 0.035058647 prediction 0.546098166936215 Functional Gain - POP4 ENSG00000105171 CDS Human protein_coding chr19:30102772 chr19:30102776 nonsynonymous SNV 0.020 1 25 hm5C_associated_SNPs_104632 0 0 1 0 2 POP4 chr19:30102769 3'AG 30102769 Downstream 8bp
chr19 30102776 30102776 1 + C G LUAD 30102772 + 30102752 30102792 41 TTCTGACTTTGCTGCAGATACAGCCTTTTCCTCCCTCTCCA TTCTGACTTTGCTGCAGATACAGCGTTTTCCTCCCTCTCCA < 41bp 0.488551242960953 0.773049083468108 0.012382984 0.035058647 prediction 0.546098166936215 Functional Gain - POP4 ENSG00000105171 CDS Human protein_coding chr19:30102772 chr19:30102776 nonsynonymous SNV 0.020 1 25 hm5C_associated_SNPs_104632 0 0 1 0 2 POP4 chr19:30102846 5'GT 30102846 Upstream 71bp
chr19 804074 804074 1 + C G SKCM 804070 + 804050 804090 41 AGCAAGAAGTTCAAAGGTGACAGCCGAAGTGCAGGCGTCCC AGCAAGAAGTTCAAAGGTGACAGCGGAAGTGCAGGCGTCCC < 41bp 0.485259775354064 0.773022097555104 0.16007015 0.27885926 prediction 0.546044195110209 Functional Gain - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804070 chr19:804074 nonsynonymous SNV 0.418 2 25 hm5C_associated_SNPs_104635 0 0 1 0 1 PTBP1 chr19:804036 3'AG 804036 Downstream 39bp
chr9 137704471 137704471 1 + C A ESCA 137704467 + 137704447 137704487 41 CTAGGGCCCCCCGGGTCCCCCTGGCCCCCGAGGACCCTCCG CTAGGGCCCCCCGGGTCCCCCTGGACCCCGAGGACCCTCCG < 41bp 0.391283887675837 0.773001014737547 0.7716999 0.6828373 prediction 0.546002029475094 Functional Gain - COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137704467 chr9:137704471 synonymous SNV . 0 25 hm5C_associated_SNPs_104638 0 0 0 0 2 COL5A1 chr9:137704451 3'AG 137704451 Downstream 21bp
chr9 137704471 137704471 1 + C A ESCA 137704467 + 137704447 137704487 41 CTAGGGCCCCCCGGGTCCCCCTGGCCCCCGAGGACCCTCCG CTAGGGCCCCCCGGGTCCCCCTGGACCCCGAGGACCCTCCG < 41bp 0.391283887675837 0.773001014737547 0.7716999 0.6828373 prediction 0.546002029475094 Functional Gain - COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137704467 chr9:137704471 synonymous SNV . 0 25 hm5C_associated_SNPs_104638 0 0 0 0 2 COL5A1 chr9:137704558 5'GT 137704558 Upstream 88bp
chr19 50957291 50957291 1 + C G rs200073552 50957290 + 50957270 50957310 41 CGTTCAGGTATTCACGACCACCGAGGGCAGGACCCGCATCG CGTTCAGGTATTCACGACCACGGAGGGCAGGACCCGCATCG < 41bp 0.460184014137292 0.772987300960078 0.541162 0.847467 prediction 0.545974601920155 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957290 chr19:50957291 synonymous SNV . 0 22 hm5C_associated_SNPs_104639 0 0 0 0 1 MYBPC2 chr19:50957277 3'AG 50957277 Downstream 15bp
chr11 60470880 60470880 1 + C A LUSC 60470876 + 60470856 60470896 41 CCAGATCATCATTGGCCTGGCTCACATCGGCCTCGGCTCCA CCAGATCATCATTGGCCTGGCTCAAATCGGCCTCGGCTCCA < 41bp 0.350360322556031 0.772978430047147 0.11980125 0.26716572 prediction 0.545956860094293 Functional Gain - MS4A8 ENSG00000166959 CDS Human protein_coding chr11:60470876 chr11:60470880 nonsynonymous SNV 0.158 3 25 hm5C_associated_SNPs_104640 0 0 0 0 2 MS4A8 chr11:60470851 3'AG 60470851 Downstream 30bp
chr11 60470880 60470880 1 + C A LUSC 60470876 + 60470856 60470896 41 CCAGATCATCATTGGCCTGGCTCACATCGGCCTCGGCTCCA CCAGATCATCATTGGCCTGGCTCAAATCGGCCTCGGCTCCA < 41bp 0.350360322556031 0.772978430047147 0.11980125 0.26716572 prediction 0.545956860094293 Functional Gain - MS4A8 ENSG00000166959 CDS Human protein_coding chr11:60470876 chr11:60470880 nonsynonymous SNV 0.158 3 25 hm5C_associated_SNPs_104640 0 0 0 0 2 MS4A8 chr11:60470973 5'GT 60470973 Upstream 94bp
chr19 1271648 1271648 1 + C A rs115311065 1271644 + 1271624 1271664 41 TATAGCAGGTGAGGGGGAGGCCGGCCCAAGCACAGGGGTGG TATAGCAGGTGAGGGGGAGGCCGGACCAAGCACAGGGGTGG < 41bp 0.411396566932063 0.772965742833144 0.89243877 0.88697326 prediction 0.545931485666287 Functional Gain - CIRBP ENSG00000099622 UTR3 Human protein_coding chr19:1271644 chr19:1271648 . . 0 25 hm5C_associated_SNPs_104643 0 0 0 0 1 CIRBP chr19:1271550 3'AG 1271550 Downstream 99bp
chr15 45007681 45007681 1 + T G COAD 45007679 + 45007659 45007699 41 GAGAATGGAAAGTCAAATTTCCTGAATTGCTATGTGTCTGG GAGAATGGAAAGTCAAATTTCCGGAATTGCTATGTGTCTGG < 41bp 0.566085202993539 0.839045446766961 0.17098978 0.40755737 prediction 0.545920487546842 Functional Gain - B2M ENSG00000166710 CDS Human protein_coding chr15:45007679 chr15:45007681 nonsynonymous SNV 0.674 3 23 hm5C_associated_SNPs_104644 0 0 1 0 2 B2M chr15:45007621 3'AG 45007621 Downstream 61bp
chr15 45007681 45007681 1 + T G COAD 45007679 + 45007659 45007699 41 GAGAATGGAAAGTCAAATTTCCTGAATTGCTATGTGTCTGG GAGAATGGAAAGTCAAATTTCCGGAATTGCTATGTGTCTGG < 41bp 0.566085202993539 0.839045446766961 0.17098978 0.40755737 prediction 0.545920487546842 Functional Gain - B2M ENSG00000166710 CDS Human protein_coding chr15:45007679 chr15:45007681 nonsynonymous SNV 0.674 3 23 hm5C_associated_SNPs_104644 0 0 1 0 2 B2M chr15:45007757 5'GT 45007757 Upstream 77bp
chr22 46202885 46202885 1 + T G UCEC 46202883 + 46202863 46202903 41 TTGATCCTGGACAACTGCAACATCAGTGACAGTAACCCCTG TTGATCCTGGACAACTGCAACAGCAGTGACAGTAACCCCTG < 41bp 0.577937691708043 0.850887095495399 0.14720637 0.48527583 prediction 0.545898807574711 Functional Gain - ATXN10 ENSG00000130638 CDS Human protein_coding chr22:46202883 chr22:46202885 nonsynonymous SNV 0.636 2 23 hm5C_associated_SNPs_104646 0 0 1 0 2 ATXN10 chr22:46202839 3'AG 46202839 Downstream 47bp
chr22 46202885 46202885 1 + T G UCEC 46202883 + 46202863 46202903 41 TTGATCCTGGACAACTGCAACATCAGTGACAGTAACCCCTG TTGATCCTGGACAACTGCAACAGCAGTGACAGTAACCCCTG < 41bp 0.577937691708043 0.850887095495399 0.14720637 0.48527583 prediction 0.545898807574711 Functional Gain - ATXN10 ENSG00000130638 CDS Human protein_coding chr22:46202883 chr22:46202885 nonsynonymous SNV 0.636 2 23 hm5C_associated_SNPs_104646 0 0 1 0 2 ATXN10 chr22:46202902 5'GT 46202902 Upstream 18bp
chr19 11558533 11558533 1 + C G rs201537803 11558532 + 11558512 11558552 41 CCCCACCGCCACTGTCACCCCCGCAGCCGGCCAGCCCTGCT CCCCACCGCCACTGTCACCCCGGCAGCCGGCCAGCCCTGCT < 41bp 0.561495304586636 0.834393272368378 0.34685236 0.8276444 prediction 0.545795935563485 Functional Gain - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11558532 chr19:11558533 nonsynonymous SNV 0.020 0 22 hm5C_associated_SNPs_104650 0 0 1 0 2 PRKCSH chr19:11558508 3'AG 11558508 Downstream 26bp
chr19 11558533 11558533 1 + C G rs201537803 11558532 + 11558512 11558552 41 CCCCACCGCCACTGTCACCCCCGCAGCCGGCCAGCCCTGCT CCCCACCGCCACTGTCACCCCGGCAGCCGGCCAGCCCTGCT < 41bp 0.561495304586636 0.834393272368378 0.34685236 0.8276444 prediction 0.545795935563485 Functional Gain - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11558532 chr19:11558533 nonsynonymous SNV 0.020 0 22 hm5C_associated_SNPs_104650 0 0 1 0 2 PRKCSH chr19:11558604 5'GT 11558604 Upstream 72bp
chr1 42922666 42922666 1 + T A COAD 42922662 + 42922642 42922682 41 CAGGAGGCTGCGGCTGCAGGCACCTTCCTGGCAGTAGAGTT CAGGAGGCTGCGGCTGCAGGCACCATCCTGGCAGTAGAGTT < 41bp 0.46422322739231 0.77289435319896 0.23297441 0.4177921 prediction 0.545788706397919 Functional Gain - PPCS ENSG00000127125 CDS Human protein_coding chr1:42922662 chr1:42922666 nonsynonymous SNV 0.976 1 25 hm5C_associated_SNPs_104651 0 0 0 0 1 PPCS chr1:42922744 5'GT 42922744 Upstream 79bp
chr19 12781529 12781529 1 + C G rs534072360 12781528 + 12781508 12781548 41 GGCTCTATTGATTCCAGTATCCGCTGTTGGGATTGCCGCTC GGCTCTATTGATTCCAGTATCGGCTGTTGGGATTGCCGCTC < 41bp 0.571576313974677 0.844428771876917 0.35901403 0.9160388 prediction 0.54570491580448 Functional Gain - WDR83 ENSG00000123154 CDS Human protein_coding chr19:12781528 chr19:12781529 nonsynonymous SNV 0.965 3 22 hm5C_associated_SNPs_104652 0 0 0 0 1 WDR83 chr19:12781509 3'AG 12781509 Downstream 21bp
chrX 14550407 14550407 1 + T C UCEC 14550405 + 14550385 14550425 41 CTCCAGGTCTGGAAAACAACCTTCACAGACCCTATCTCCTT CTCCAGGTCTGGAAAACAACCTCCACAGACCCTATCTCCTT < 41bp 0.477352100820912 0.772851680887173 0.123155 0.9327204 prediction 0.545703361774346 Functional Gain - GLRA2 ENSG00000101958 CDS Human protein_coding chrX:14550405 chrX:14550407 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_104653 0 0 0 0 2 GLRA2 chrX:14550361 3'AG 14550361 Downstream 47bp
chrX 14550407 14550407 1 + T C UCEC 14550405 + 14550385 14550425 41 CTCCAGGTCTGGAAAACAACCTTCACAGACCCTATCTCCTT CTCCAGGTCTGGAAAACAACCTCCACAGACCCTATCTCCTT < 41bp 0.477352100820912 0.772851680887173 0.123155 0.9327204 prediction 0.545703361774346 Functional Gain - GLRA2 ENSG00000101958 CDS Human protein_coding chrX:14550405 chrX:14550407 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_104653 0 0 0 0 2 GLRA2 chrX:14550494 5'GT 14550494 Upstream 88bp
chrX 100805631 100805631 1 + T G rs7055900 100805629 + 100805609 100805649 41 GGAAGGAGGACGAGGTTCTGCCTGGATCCCAGCAGGTTTGT GGAAGGAGGACGAGGTTCTGCCGGGATCCCAGCAGGTTTGT < 41bp 0.596115208254566 0.868958914958496 0.07026908 0.8565323 prediction 0.54568741340786 Functional Gain - ARMCX1 ENSG00000126947 UTR5 Human protein_coding chrX:100805629 chrX:100805631 . . 0 23 hm5C_associated_SNPs_104655 0 0 0 0 1 ARMCX1 chrX:100805643 5'GT 100805643 Upstream 13bp
chr16 85691118 85691118 1 + C G rs149163248 85691117 + 85691097 85691137 41 GGACCGGCAGTCTCAGGTGTCCGAGTTCCGGCAGCAGGTGC GGACCGGCAGTCTCAGGTGTCGGAGTTCCGGCAGCAGGTGC < 41bp 0.561526250713232 0.834359356642912 0.8670444 0.92269313 prediction 0.545666211859361 Functional Gain - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691117 chr16:85691118 synonymous SNV . 0 22 hm5C_associated_SNPs_104656 0 0 1 0 1 GSE1 chr16:85691210 5'GT 85691210 Upstream 93bp
chr17 48456193 48456193 1 + T C rs12450550 48456191 + 48456171 48456211 41 CTTCAGGGCTTTGTAACTGACATCACAGCAAAGACAGCAGG CTTCAGGGCTTTGTAACTGACACCACAGCAAAGACAGCAGG < 41bp 0.511149659307991 0.783953375689933 0.10138005 0.04144934 prediction 0.545607432763884 Functional Gain - EME1 ENSG00000154920 CDS Human protein_coding chr17:48456191 chr17:48456193 nonsynonymous SNV 0.607 0 23 hm5C_associated_SNPs_104659 0 0 1 0 2 EME1 chr17:48456135 3'AG 48456135 Downstream 59bp
chr17 48456193 48456193 1 + T C rs12450550 48456191 + 48456171 48456211 41 CTTCAGGGCTTTGTAACTGACATCACAGCAAAGACAGCAGG CTTCAGGGCTTTGTAACTGACACCACAGCAAAGACAGCAGG < 41bp 0.511149659307991 0.783953375689933 0.10138005 0.04144934 prediction 0.545607432763884 Functional Gain - EME1 ENSG00000154920 CDS Human protein_coding chr17:48456191 chr17:48456193 nonsynonymous SNV 0.607 0 23 hm5C_associated_SNPs_104659 0 0 1 0 2 EME1 chr17:48456256 5'GT 48456256 Upstream 64bp
chr15 29398963 29398963 1 + T A STAD 29398959 + 29398939 29398979 41 CTGAGCATCGGGGACCAGATCATGTCCATCAATGGCACCAG CTGAGCATCGGGGACCAGATCATGACCATCAATGGCACCAG < 41bp 0.457271641300118 0.772783182367231 0.5350647 0.4695823 prediction 0.545566364734462 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29398959 chr15:29398963 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_104661 0 0 0 0 1 APBA2 chr15:29399022 5'GT 29399022 Upstream 60bp
chr19 51728522 51728522 1 + T G MESO 51728519 + 51728499 51728539 41 CTGGCTGCAAGTGCAGGAGTCAGTGACGGTACAGGAGGGTT CTGGCTGCAAGTGCAGGAGTCAGGGACGGTACAGGAGGGTT < 41bp 0.382091882551757 0.772771361534085 0.20453164 0.85955846 prediction 0.54554272306817 Functional Gain - CD33 ENSG00000105383 CDS Human protein_coding chr19:51728519 chr19:51728522 nonsynonymous SNV 0.038 3 24 hm5C_associated_SNPs_104662 0 0 0 0 1 CD33 chr19:51728474 3'AG 51728474 Downstream 49bp
chr22 44585003 44585003 1 + C G THCA 44584999 + 44584979 44585019 41 CTCTCCTGCCTCCAGAGAGGCTGGCGGCGCTCAAGCTGGAA CTCTCCTGCCTCCAGAGAGGCTGGGGGCGCTCAAGCTGGAA < 41bp 0.482426328543616 0.772769169047199 0.5243658 0.86963093 prediction 0.545538338094397 Functional Gain - PARVG ENSG00000138964 CDS Human protein_coding chr22:44584999 chr22:44585003 nonsynonymous SNV 0.370 1 25 hm5C_associated_SNPs_104664 0 0 0 0 1 PARVG chr22:44584994 3'AG 44584994 Downstream 10bp
chr8 125559294 125559294 1 + T G STAD 125559292 + 125559272 125559312 41 CTTCTGAGAAGGCAATGTATCCTGATTACTTTGCCAAGAGA CTTCTGAGAAGGCAATGTATCCGGATTACTTTGCCAAGAGA < 41bp 0.587539107581052 0.860296632062845 0.38820556 0.87901866 prediction 0.545515048963587 Functional Gain - NDUFB9 ENSG00000147684 CDS Human protein_coding chr8:125559292 chr8:125559294 synonymous SNV . 0 23 hm5C_associated_SNPs_104665 0 0 1 0 2 NDUFB9 chr8:125559241 3'AG 125559241 Downstream 54bp
chr8 125559294 125559294 1 + T G STAD 125559292 + 125559272 125559312 41 CTTCTGAGAAGGCAATGTATCCTGATTACTTTGCCAAGAGA CTTCTGAGAAGGCAATGTATCCGGATTACTTTGCCAAGAGA < 41bp 0.587539107581052 0.860296632062845 0.38820556 0.87901866 prediction 0.545515048963587 Functional Gain - NDUFB9 ENSG00000147684 CDS Human protein_coding chr8:125559292 chr8:125559294 synonymous SNV . 0 23 hm5C_associated_SNPs_104665 0 0 1 0 2 NDUFB9 chr8:125559354 5'GT 125559354 Upstream 61bp
chr12 105380151 105380151 1 + C G SARC 105380150 + 105380130 105380170 41 CATGGAGGTCCATGGCAAGCCCAAGGCTAGCCCGAGTTGTT CATGGAGGTCCATGGCAAGCCGAAGGCTAGCCCGAGTTGTT < 41bp 0.524021183550159 0.796763084481346 0.2682331 0.4823559 prediction 0.545483801862374 Functional Gain - C12orf45 ENSG00000151131 CDS Human protein_coding chr12:105380150 chr12:105380151 synonymous SNV . 0 22 hm5C_associated_SNPs_104668 0 0 1 0 1 C12orf45 chr12:105380245 5'GT 105380245 Upstream 95bp
chr11 64360331 64360331 1 + T A LUAD 64360327 + 64360307 64360347 41 GGCTGGGATTCTGGTGGGAGCTGCTGCGTGCGGCCCTGCCT GGCTGGGATTCTGGTGGGAGCTGCAGCGTGCGGCCCTGCCT < 41bp 0.570992802014933 0.843703474611764 0.55457795 0.78932905 prediction 0.545421345193661 Functional Gain - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64360327 chr11:64360331 synonymous SNV . 0 25 hm5C_associated_SNPs_104673 0 0 0 0 2 SLC22A12 chr11:64360251 3'AG 64360251 Downstream 81bp
chr11 64360331 64360331 1 + T A LUAD 64360327 + 64360307 64360347 41 GGCTGGGATTCTGGTGGGAGCTGCTGCGTGCGGCCCTGCCT GGCTGGGATTCTGGTGGGAGCTGCAGCGTGCGGCCCTGCCT < 41bp 0.570992802014933 0.843703474611764 0.55457795 0.78932905 prediction 0.545421345193661 Functional Gain - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64360327 chr11:64360331 synonymous SNV . 0 25 hm5C_associated_SNPs_104673 0 0 0 0 2 SLC22A12 chr11:64360354 5'GT 64360354 Upstream 24bp
chr8 42025245 42025245 1 + T C UCEC 42025243 + 42025223 42025263 41 CTACCAAGTTTGAAGGGGACCATGAGTCTTCAGGCTGGAGC CTACCAAGTTTGAAGGGGACCACGAGTCTTCAGGCTGGAGC < 41bp 0.517083616677982 0.789773860513972 0.07883492 0.09759125 prediction 0.545380487671982 Functional Gain - AP3M2 ENSG00000070718 CDS Human protein_coding chr8:42025243 chr8:42025245 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_104676 0 0 1 0 2 AP3M2 chr8:42025184 3'AG 42025184 Downstream 62bp
chr8 42025245 42025245 1 + T C UCEC 42025243 + 42025223 42025263 41 CTACCAAGTTTGAAGGGGACCATGAGTCTTCAGGCTGGAGC CTACCAAGTTTGAAGGGGACCACGAGTCTTCAGGCTGGAGC < 41bp 0.517083616677982 0.789773860513972 0.07883492 0.09759125 prediction 0.545380487671982 Functional Gain - AP3M2 ENSG00000070718 CDS Human protein_coding chr8:42025243 chr8:42025245 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_104676 0 0 1 0 2 AP3M2 chr8:42025328 5'GT 42025328 Upstream 84bp
chr15 90801295 90801295 1 + C A OV 90801291 + 90801271 90801311 41 AAGCTGTCGACACTCAACATCTGGCTGCAAGAGCACAGCTA AAGCTGTCGACACTCAACATCTGGATGCAAGAGCACAGCTA < 41bp 0.370307472647586 0.772684157831324 0.13178048 0.21979374 prediction 0.545368315662648 Functional Gain - TTLL13P ENSG00000213471 CDS Human protein_coding chr15:90801291 chr15:90801295 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_104677 0 0 0 0 1 TTLL13P chr15:90801270 3'AG 90801270 Downstream 26bp
chr9 140127698 140127698 1 + T A LIHC 140127694 + 140127674 140127714 41 TCGGCGGTGCACGGGATCTTCAACTGGCTCACAGTGCTGGT TCGGCGGTGCACGGGATCTTCAACAGGCTCACAGTGCTGGT < 41bp 0.568267632896072 0.840931403150157 0.64712894 0.46485102 prediction 0.545327540508171 Functional Gain - SLC34A3 ENSG00000198569 CDS Human protein_coding chr9:140127694 chr9:140127698 nonsynonymous SNV 0.987 5 25 hm5C_associated_SNPs_104679 0 0 0 0 1 SLC34A3 chr9:140127661 3'AG 140127661 Downstream 38bp
chr11 65632497 65632497 1 + C A COAD 65632493 + 65632473 65632513 41 CCCTTCTTCCCTCAGGGCCACACCCTACGCAGCCGCCCCTG CCCTTCTTCCCTCAGGGCCACACCATACGCAGCCGCCCCTG < 41bp 0.349479696493659 0.772655536178919 0.041089952 0.13706669 prediction 0.545311072357839 Functional Gain - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65632493 chr11:65632497 nonsynonymous SNV 0.978 1 25 hm5C_associated_SNPs_104681 0 0 1 0 1 MUS81 chr11:65632488 3'AG 65632488 Downstream 10bp
chr2 223559945 223559945 1 + C A rs150691945 223559941 + 223559921 223559961 41 GGTTTGCTTTGCCCCTGTTTCATGCCAGGGGAGTTTTTCAG GGTTTGCTTTGCCCCTGTTTCATGACAGGGGAGTTTTTCAG < 41bp 0.369770695680012 0.772651190519672 0.18372408 0.19023237 prediction 0.545302381039343 Functional Gain - MOGAT1 ENSG00000124003 CDS Human protein_coding chr2:223559941 chr2:223559945 nonsynonymous SNV 0.916 2 25 hm5C_associated_SNPs_104682 0 0 0 0 1 MOGAT1 chr2:223560007 5'GT 223560007 Upstream 63bp
chr3 3188150 3188150 1 + T C COAD 3188148 + 3188128 3188168 41 TTGTAGACAAACCTGGTGACCATGATCCTGAGACTTTGGAA TTGTAGACAAACCTGGTGACCACGATCCTGAGACTTTGGAA < 41bp 0.517699172926329 0.790337840302807 0.36702687 0.3268172 prediction 0.545277334752956 Functional Gain - TRNT1 ENSG00000072756 CDS Human protein_coding chr3:3188148 chr3:3188150 synonymous SNV . 0 23 hm5C_associated_SNPs_104683 0 0 1 0 2 TRNT1 chr3:3188114 3'AG 3188114 Downstream 37bp
chr3 3188150 3188150 1 + T C COAD 3188148 + 3188128 3188168 41 TTGTAGACAAACCTGGTGACCATGATCCTGAGACTTTGGAA TTGTAGACAAACCTGGTGACCACGATCCTGAGACTTTGGAA < 41bp 0.517699172926329 0.790337840302807 0.36702687 0.3268172 prediction 0.545277334752956 Functional Gain - TRNT1 ENSG00000072756 CDS Human protein_coding chr3:3188148 chr3:3188150 synonymous SNV . 0 23 hm5C_associated_SNPs_104683 0 0 1 0 2 TRNT1 chr3:3188247 5'GT 3188247 Upstream 98bp
chr16 30528336 30528336 1 + C A BRCA 30528332 + 30528312 30528352 41 ATCCACGACCACAACATACCCACCCTGGAGGCTGTGGTTGG ATCCACGACCACAACATACCCACCATGGAGGCTGTGGTTGG < 41bp 0.356559238190484 0.772631178518975 0.021660388 0.04165867 prediction 0.54526235703795 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30528332 chr16:30528336 nonsynonymous SNV 0.007 3 25 hm5C_associated_SNPs_104684 0 0 0 0 2 ITGAL chr16:30528294 3'AG 30528294 Downstream 43bp
chr16 30528336 30528336 1 + C A BRCA 30528332 + 30528312 30528352 41 ATCCACGACCACAACATACCCACCCTGGAGGCTGTGGTTGG ATCCACGACCACAACATACCCACCATGGAGGCTGTGGTTGG < 41bp 0.356559238190484 0.772631178518975 0.021660388 0.04165867 prediction 0.54526235703795 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30528332 chr16:30528336 nonsynonymous SNV 0.007 3 25 hm5C_associated_SNPs_104684 0 0 0 0 2 ITGAL chr16:30528407 5'GT 30528407 Upstream 72bp
chr1 202245610 202245610 1 + C G LUAD 202245609 + 202245589 202245629 41 TCAACCGCATCAGCCACATCCCCGACTACGCGTTCCAGAAT TCAACCGCATCAGCCACATCCGCGACTACGCGTTCCAGAAT < 41bp 0.5632324123377 0.835862005778401 0.048629016 0.4161876 prediction 0.5452591868814 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202245609 chr1:202245610 nonsynonymous SNV 0.986 3 22 hm5C_associated_SNPs_104685 0 0 0 0 1 LGR6 chr1:202245649 5'GT 202245649 Upstream 40bp
chr3 192959289 192959289 1 + C G rs188693944 192959288 + 192959268 192959308 41 AGGACACACACAGCTGCCTCCCGGTGCGAGAAGAAGACCCC AGGACACACACAGCTGCCTCCGGGTGCGAGAAGAAGACCCC < 41bp 0.54170469435713 0.814296650497502 0.07290128 0.8904859 prediction 0.545183912280744 Functional Gain - HRASLS ENSG00000127252 CDS Human protein_coding chr3:192959288 chr3:192959289 synonymous SNV . 0 22 hm5C_associated_SNPs_104689 0 0 0 0 1 HRASLS chr3:192959322 5'GT 192959322 Upstream 34bp
chr7 141803169 141803169 1 + T A SKCM 141803165 + 141803145 141803185 41 TCTGGGGAGTGGGCAGTGTCCCCGTTACCAGTGTCAGCATC TCTGGGGAGTGGGCAGTGTCCCCGATACCAGTGTCAGCATC < 41bp 0.468541692459227 0.772547663336645 0.2412698 0.2789138 prediction 0.545095326673291 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141803165 chr7:141803169 nonsynonymous SNV 0.092 1 25 hm5C_associated_SNPs_104691 0 0 0 0 1 MGAM chr7:141803239 5'GT 141803239 Upstream 71bp
chr19 50961863 50961863 1 + C G BLCA 50961859 + 50961839 50961879 41 TCCAGCCGAGGAATGGGTCCCTGCCAACACCGAGCCCGTGG TCCAGCCGAGGAATGGGTCCCTGCGAACACCGAGCCCGTGG < 41bp 0.48799328500268 0.772500607575761 0.041778862 0.10830459 prediction 0.545001215151523 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50961859 chr19:50961863 synonymous SNV . 0 25 hm5C_associated_SNPs_104698 0 0 0 0 1 MYBPC2 chr19:50961844 3'AG 50961844 Downstream 20bp
chr19 45130767 45130767 1 + C A UCEC 45130763 + 45130743 45130783 41 GAGCCCATGGAGCCAGACCCCACTCTGTCCCTGTCAGGAGG GAGCCCATGGAGCCAGACCCCACTATGTCCCTGTCAGGAGG < 41bp 0.364535126852554 0.772494505222333 0.08457911 0.047102958 prediction 0.544989010444666 Functional Gain - IGSF23 ENSG00000216588 CDS Human protein_coding chr19:45130763 chr19:45130767 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_104701 0 0 0 0 1 IGSF23 chr19:45130717 3'AG 45130717 Downstream 51bp
chr17 16120706 16120706 1 + T A STAD 16120702 + 16120682 16120722 41 GCGCACCCTGACGATGAAGCCATGTTTTTTGCTCCCACAGT GCGCACCCTGACGATGAAGCCATGATTTTTGCTCCCACAGT < 41bp 0.473250551080519 0.772470766448494 0.17123234 0.29385385 prediction 0.544941532896988 Functional Gain - PIGL ENSG00000108474 CDS Human protein_coding chr17:16120702 chr17:16120706 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_104704 0 0 1 0 1 PIGL chr17:16120775 5'GT 16120775 Upstream 70bp
chr16 1706740 1706740 1 + C G rs533832759 1706739 + 1706719 1706759 41 GACAGCCTGCCGCCAGGCCCCCGAAGGAGGTCCCCGCCAGC GACAGCCTGCCGCCAGGCCCCGGAAGGAGGTCCCCGCCAGC < 41bp 0.559154608639792 0.831599278498961 0.34019622 0.9152218 prediction 0.544889339718338 Functional Gain - CRAMP1 ENSG00000007545 CDS Human protein_coding chr16:1706739 chr16:1706740 nonsynonymous SNV 0.143 0 22 hm5C_associated_SNPs_104705 0 0 0 0 1 CRAMP1 chr16:1706650 3'AG 1706650 Downstream 91bp
chr22 32464528 32464528 1 + C A SARC 32464524 + 32464504 32464544 41 CTGAGGAAGCGGTTTGGAGGCCAGCGGATCCAGGTCTACCT CTGAGGAAGCGGTTTGGAGGCCAGAGGATCCAGGTCTACCT < 41bp 0.373363380835625 0.772431108477502 0.9059534 0.92727005 prediction 0.544862216955003 Functional Gain - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32464524 chr22:32464528 synonymous SNV . 0 25 hm5C_associated_SNPs_104706 0 0 0 0 2 SLC5A1 chr22:32464483 3'AG 32464483 Downstream 46bp
chr22 32464528 32464528 1 + C A SARC 32464524 + 32464504 32464544 41 CTGAGGAAGCGGTTTGGAGGCCAGCGGATCCAGGTCTACCT CTGAGGAAGCGGTTTGGAGGCCAGAGGATCCAGGTCTACCT < 41bp 0.373363380835625 0.772431108477502 0.9059534 0.92727005 prediction 0.544862216955003 Functional Gain - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32464524 chr22:32464528 synonymous SNV . 0 25 hm5C_associated_SNPs_104706 0 0 0 0 2 SLC5A1 chr22:32464587 5'GT 32464587 Upstream 60bp
chr11 69063136 69063136 1 + C G rs7117236 69063135 + 69063115 69063155 41 CTTCGTGGAGGGCTCCAAAGCCGGCAGATCCCGGGGCCGCC CTTCGTGGAGGGCTCCAAAGCGGGCAGATCCCGGGGCCGCC < 41bp 0.559829125319805 0.83224244597776 0.8953482 0.91415215 prediction 0.54482664131591 Functional Gain - MYEOV ENSG00000172927 CDS Human protein_coding chr11:69063135 chr11:69063136 synonymous SNV . 0 22 hm5C_associated_SNPs_104709 0 0 0 0 1 MYEOV chr11:69063059 3'AG 69063059 Downstream 78bp
chr11 60971667 60971667 1 + C A LUSC 60971663 + 60971643 60971683 41 TTCCTGAAGAAGCACAACCTCAACCCAGCCAGAAAGTACTT TTCCTGAAGAAGCACAACCTCAACACAGCCAGAAAGTACTT < 41bp 0.352112521633032 0.772402004457934 0.08224478 0.035478443 prediction 0.544804008915867 Functional Gain - PGA3 ENSG00000229859 CDS Human protein_coding chr11:60971663 chr11:60971667 nonsynonymous SNV 0.003 1 25 hm5C_associated_SNPs_104711 0 0 0 0 1 PGA3 chr11:60971741 5'GT 60971741 Upstream 75bp
chr7 100799899 100799899 1 + C G LUAD 100799895 + 100799875 100799915 41 ATGCGGTTCATGCTATTATTCAGCCGGCAGGGAAAACTGCG ATGCGGTTCATGCTATTATTCAGCGGGCAGGGAAAACTGCG < 41bp 0.486697840465544 0.772393072131782 0.76798177 0.9243554 prediction 0.544786144263563 Functional Gain - AP1S1 ENSG00000106367 CDS Human protein_coding chr7:100799895 chr7:100799899 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_104714 0 0 1 0 1 AP1S1 chr7:100799875 3'AG 100799875 Downstream 25bp
chr6 150285204 150285204 1 + C A COAD 150285200 + 150285180 150285220 41 TCTACAATGGCAGCGGCCGCCAGCCCCGCGTTCCTTCTGTG TCTACAATGGCAGCGGCCGCCAGCACCGCGTTCCTTCTGTG < 41bp 0.623054466028103 0.895414063256714 0.81744397 0.8005003 prediction 0.544719194457223 Functional Gain - ULBP1 ENSG00000111981 CDS Human protein_coding chr6:150285200 chr6:150285204 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_104721 0 0 0 0 1 ULBP1 chr6:150285270 5'GT 150285270 Upstream 67bp
chr18 43204711 43204711 1 + C A HNSC 43204707 + 43204687 43204727 41 CTCTACGAGGCAGAGTTTACCAGCCCGAGCTGGCCCTCGAC CTCTACGAGGCAGAGTTTACCAGCACGAGCTGGCCCTCGAC < 41bp 0.379777282460797 0.772356442302221 0.82757056 0.6709887 prediction 0.544712884604442 Functional Gain - SLC14A2 ENSG00000132874 CDS Human protein_coding chr18:43204707 chr18:43204711 nonsynonymous SNV 0.037 0 25 hm5C_associated_SNPs_104722 0 0 0 0 1 SLC14A2 chr18:43204779 5'GT 43204779 Upstream 69bp
chr6 43100368 43100368 1 + T A OV 43100364 + 43100344 43100384 41 GAAAGTGATGCTGGTGTCTACACCTGCCACGCGGCCAACCT GAAAGTGATGCTGGTGTCTACACCAGCCACGCGGCCAACCT < 41bp 0.444587840231171 0.772354458499552 0.14419141 0.41865766 prediction 0.544708916999104 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43100364 chr6:43100368 nonsynonymous SNV 0.996 5 25 hm5C_associated_SNPs_104723 0 0 1 0 1 PTK7 chr6:43100425 5'GT 43100425 Upstream 58bp
chr19 11486212 11486212 1 + C A UCEC 11486208 + 11486188 11486228 41 GAAGATCCGCTTCCAGTACCCACCCTCAACCCGAGAGCTTT GAAGATCCGCTTCCAGTACCCACCATCAACCCGAGAGCTTT < 41bp 0.372785516723109 0.772330432368444 0.029924512 0.041459084 prediction 0.544660864736888 Functional Gain - SWSAP1 ENSG00000173928 CDS Human protein_coding chr19:11486208 chr19:11486212 synonymous SNV . 0 25 hm5C_associated_SNPs_104725 0 0 1 0 1 SWSAP1 chr19:11486189 3'AG 11486189 Downstream 24bp
chr7 141414139 141414139 1 + T C LIHC 141414137 + 141414117 141414157 41 GCTCTGGTCAATATTAATCCCTTCACTCCAGAGTCCTATAA GCTCTGGTCAATATTAATCCCTCCACTCCAGAGTCCTATAA < 41bp 0.53742205532892 0.809727627021764 0.009412944 0.93813866 prediction 0.544611143385688 Functional Gain - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141414137 chr7:141414139 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_104728 0 0 0 0 1 WEE2 chr7:141414205 5'GT 141414205 Upstream 67bp
chr12 58112867 58112867 1 + T C LIHC 58112865 + 58112845 58112885 41 ACATCCACTCTCAACAAACTCATCAAAAGACTGGAGGAAAA ACATCCACTCTCAACAAACTCACCAAAAGACTGGAGGAAAA < 41bp 0.511005559471647 0.783304072413717 0.44227272 0.33662465 prediction 0.544597025884138 Functional Gain - OS9 ENSG00000135506 CDS Human protein_coding chr12:58112865 chr12:58112867 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_104730 0 0 1 0 2 OS9 chr12:58112776 3'AG 58112776 Downstream 92bp
chr12 58112867 58112867 1 + T C LIHC 58112865 + 58112845 58112885 41 ACATCCACTCTCAACAAACTCATCAAAAGACTGGAGGAAAA ACATCCACTCTCAACAAACTCACCAAAAGACTGGAGGAAAA < 41bp 0.511005559471647 0.783304072413717 0.44227272 0.33662465 prediction 0.544597025884138 Functional Gain - OS9 ENSG00000135506 CDS Human protein_coding chr12:58112865 chr12:58112867 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_104730 0 0 1 0 2 OS9 chr12:58112965 5'GT 58112965 Upstream 99bp
chr1 84876577 84876577 1 + T G UCEC 84876574 + 84876554 84876594 41 GGCTGATTCATTCCATCCCTCAGTTTCCTCCAATTCCGGAA GGCTGATTCATTCCATCCCTCAGGTTCCTCCAATTCCGGAA < 41bp 0.376849830525748 0.7722973315818 0.025996834 0.14219496 prediction 0.5445946631636 Functional Gain - DNASE2B ENSG00000137976 CDS Human protein_coding chr1:84876574 chr1:84876577 nonsynonymous SNV 0.720 3 24 hm5C_associated_SNPs_104731 0 0 0 0 1 DNASE2B chr1:84876521 3'AG 84876521 Downstream 57bp
chr16 55360337 55360337 1 + C G BLCA 55360333 + 55360313 55360353 41 GGCATCAGGCTCCACCCCAGCGCCCGCTCTCTGCTGCGCAC GGCATCAGGCTCCACCCCAGCGCCGGCTCTCTGCTGCGCAC < 41bp 0.516426092247605 0.788660507997032 0.061787933 0.13250387 prediction 0.544468831498855 Functional Gain - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55360333 chr16:55360337 synonymous SNV . 0 25 hm5C_associated_SNPs_104737 0 0 0 0 1 IRX6 chr16:55360248 3'AG 55360248 Downstream 90bp
chrX 18646665 18646665 1 + C A LUAD 18646661 + 18646641 18646681 41 TCTGGCGGGAGCAGCAACATCCGGCAGGAACCCGCACCGAA TCTGGCGGGAGCAGCAACATCCGGAAGGAACCCGCACCGAA < 41bp 0.641472218981449 0.913704160398663 0.8250505 0.9088417 prediction 0.544463882834426 Functional Gain - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18646661 chrX:18646665 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_104738 0 0 0 0 1 CDKL5 chrX:18646707 5'GT 18646707 Upstream 43bp
chr19 4345774 4345774 1 + C G rs200526614 4345770 + 4345750 4345790 41 GTTCCTGGGCGACCTGCAGCCAGACGGAAGGATCATGTGGC GTTCCTGGGCGACCTGCAGCCAGAGGGAAGGATCATGTGGC < 41bp 0.519012131116886 0.791137858864159 0.87598014 0.90818024 prediction 0.544251455494547 Functional Gain - MPND ENSG00000008382 CDS Human protein_coding chr19:4345770 chr19:4345774 nonsynonymous SNV 0.523 4 25 hm5C_associated_SNPs_104746 0 0 1 0 1 MPND chr19:4345742 3'AG 4345742 Downstream 33bp
chr10 105181309 105181309 1 + C G BRCA 105181305 + 105181285 105181325 41 GAGGAGCTGCAGGGCGTGCGCAGCCTTATGAGCAACCGAGG GAGGAGCTGCAGGGCGTGCGCAGCGTTATGAGCAACCGAGG < 41bp 0.518450802967735 0.790574421039675 0.3570119 0.7233369 prediction 0.544247236143881 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105181305 chr10:105181309 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_104747 0 0 1 0 1 PDCD11 chr10:105181324 5'GT 105181324 Upstream 16bp
chr1 171173031 171173031 1 + T A LUSC 171173027 + 171173007 171173047 41 TTTATCAGCACCAGGCATGGCACCTGGGTCATGAGCCGTAT TTTATCAGCACCAGGCATGGCACCAGGGTCATGAGCCGTAT < 41bp 0.574246666042206 0.84636111773332 0.10397977 0.2128563 prediction 0.544228903382227 Functional Gain - FMO2 ENSG00000094963 CDS Human protein_coding chr1:171173027 chr1:171173031 nonsynonymous SNV 0.450 4 25 hm5C_associated_SNPs_104748 0 0 0 0 1 FMO2 chr1:171173004 3'AG 171173004 Downstream 28bp
chr2 231101855 231101855 1 + T G rs115618178 231101853 + 231101833 231101873 41 ACCTGCAGGAGCAGGTTTGCCCTGAGCCCATTTTCAGGTTC ACCTGCAGGAGCAGGTTTGCCCGGAGCCCATTTTCAGGTTC < 41bp 0.58969036979321 0.861758725610101 0.40979683 0.9055083 prediction 0.544136711633782 Functional Gain - SP140 ENSG00000079263 CDS Human protein_coding chr2:231101853 chr2:231101855 synonymous SNV . 0 23 hm5C_associated_SNPs_104751 0 0 0 0 1 SP140 chr2:231101798 3'AG 231101798 Downstream 58bp
chr6 117246757 117246757 1 + C A LUAD 117246753 + 117246733 117246773 41 ATCTCCCTCTGCCATCCAGTCAACCTGGAGGCCTAGGCCCT ATCTCCCTCTGCCATCCAGTCAACATGGAGGCCTAGGCCCT < 41bp 0.345149408961083 0.77205582770458 0.13571167 0.30501753 prediction 0.54411165540916 Functional Gain - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117246753 chr6:117246757 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_104754 0 0 0 0 1 RFX6 chr6:117246822 5'GT 117246822 Upstream 66bp
chr14 52782053 52782053 1 + C G ESCA 52782052 + 52782032 52782072 41 ATGGCGGAGGAGACGGACCACCTCATTCTCCTGGCTATCAT ATGGCGGAGGAGACGGACCACGTCATTCTCCTGGCTATCAT < 41bp 0.468564908391334 0.772055440082374 0.32419905 0.5196307 prediction 0.544110880164749 Functional Gain - PTGER2 ENSG00000125384 CDS Human protein_coding chr14:52782052 chr14:52782053 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_104755 0 0 0 0 1 PTGER2 chr14:52782109 5'GT 52782109 Upstream 57bp
chr2 63282730 63282730 1 + T A KIRP 63282726 + 63282706 63282746 41 CAGCCAAGAAGAAGTCCTCTCCAGTGCGGGAGAGCTCGGGC CAGCCAAGAAGAAGTCCTCTCCAGAGCGGGAGAGCTCGGGC < 41bp 0.551867897414236 0.82391981115137 0.7845032 0.8754225 prediction 0.544103827474268 Functional Gain - OTX1 ENSG00000115507 CDS Human protein_coding chr2:63282726 chr2:63282730 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_104757 0 0 0 0 1 OTX1 chr2:63282636 3'AG 63282636 Downstream 95bp
chr7 151684337 151684337 1 + C A COAD 151684333 + 151684313 151684353 41 AAAAGAGAGAGGGGCTGATTCGAGCAAGGCTGATTGGAGCT AAAAGAGAGAGGGGCTGATTCGAGAAAGGCTGATTGGAGCT < 41bp 0.636537344132513 0.908547922415699 0.8424562 0.8723018 prediction 0.54402115656637 Functional Gain - GALNTL5 ENSG00000106648 CDS Human protein_coding chr7:151684333 chr7:151684337 nonsynonymous SNV 0.281 1 25 hm5C_associated_SNPs_104764 0 0 0 0 2 GALNTL5 chr7:151684244 3'AG 151684244 Downstream 94bp
chr7 151684337 151684337 1 + C A COAD 151684333 + 151684313 151684353 41 AAAAGAGAGAGGGGCTGATTCGAGCAAGGCTGATTGGAGCT AAAAGAGAGAGGGGCTGATTCGAGAAAGGCTGATTGGAGCT < 41bp 0.636537344132513 0.908547922415699 0.8424562 0.8723018 prediction 0.54402115656637 Functional Gain - GALNTL5 ENSG00000106648 CDS Human protein_coding chr7:151684333 chr7:151684337 nonsynonymous SNV 0.281 1 25 hm5C_associated_SNPs_104764 0 0 0 0 2 GALNTL5 chr7:151684366 5'GT 151684366 Upstream 30bp
chr3 49751566 49751566 1 + T A OV 49751562 + 49751542 49751582 41 GCTATACACGGCTGCCACATCTGCTGAAAACCAAACTTGAG GCTATACACGGCTGCCACATCTGCAGAAAACCAAACTTGAG < 41bp 0.430861469769588 0.771959998123526 0.24790585 0.3274101 prediction 0.543919996247052 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49751562 chr3:49751566 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_104767 0 0 1 0 1 RNF123 chr3:49751523 3'AG 49751523 Downstream 44bp
chrX 140983061 140983061 1 + T A STAD 140983057 + 140983037 140983077 41 CGCTGCCTCTGCTGTCAGCCCTGGTCAGCCTTGGCAGGGTT CGCTGCCTCTGCTGTCAGCCCTGGACAGCCTTGGCAGGGTT < 41bp 0.564870071077092 0.836815023284778 0.16756502 0.3872582 prediction 0.543889904415372 Functional Gain - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140983057 chrX:140983061 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_104769 0 0 0 0 1 MAGEC3 chrX:140983055 3'AG 140983055 Downstream 7bp
chr7 37890032 37890032 1 + T G READ 37890030 + 37890010 37890050 41 GAGATGTTGCAGAACAAAGGCTTAACAGGTATAAGGACTCC GAGATGTTGCAGAACAAAGGCTGAACAGGTATAAGGACTCC < 41bp 0.456651767850908 0.77193572808527 0.06921193 0.23465022 prediction 0.54387145617054 Functional Gain - NME8 ENSG00000086288 CDS Human protein_coding chr7:37890030 chr7:37890032 stopgain 0.993 0 23 hm5C_associated_SNPs_104772 0 0 0 0 2 NME8 chr7:37889980 3'AG 37889980 Downstream 53bp
chr7 37890032 37890032 1 + T G READ 37890030 + 37890010 37890050 41 GAGATGTTGCAGAACAAAGGCTTAACAGGTATAAGGACTCC GAGATGTTGCAGAACAAAGGCTGAACAGGTATAAGGACTCC < 41bp 0.456651767850908 0.77193572808527 0.06921193 0.23465022 prediction 0.54387145617054 Functional Gain - NME8 ENSG00000086288 CDS Human protein_coding chr7:37890030 chr7:37890032 stopgain 0.993 0 23 hm5C_associated_SNPs_104772 0 0 0 0 2 NME8 chr7:37890037 5'GT 37890037 Upstream 6bp
chr3 51690054 51690054 1 + C T GBM 51690053 + 51690033 51690073 41 CCTGTGCAGTCCACCCCCATCCCCATGATGCCCCGGCATGT CCTGTGCAGTCCACCCCCATCTCCATGATGCCCCGGCATGT < 41bp 0.522467120842861 0.794401899166278 0.070699334 0.9526924 prediction 0.543869556646836 Functional Gain - RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51690053 chr3:51690054 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_104773 0 0 1 0 1 RAD54L2 chr3:51689987 3'AG 51689987 Downstream 68bp
chr10 88419195 88419195 1 + T C LIHC 88419193 + 88419173 88419213 41 ATCATCATCTACTGCTACATCTTCATCTTCAGGGCCATCCG ATCATCATCTACTGCTACATCTCCATCTTCAGGGCCATCCG < 41bp 0.531658637306974 0.803562963314184 0.049810946 0.9195094 prediction 0.54380865201442 Functional Gain - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88419193 chr10:88419195 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_104777 0 0 0 0 1 OPN4 chr10:88419225 5'GT 88419225 Upstream 31bp
chr17 74076406 74076406 1 + C G LUAD 74076402 + 74076382 74076422 41 CAGGACGGCCACGTGAAGCTCAACCTGGCCCTCGCCACGGA CAGGACGGCCACGTGAAGCTCAACGTGGCCCTCGCCACGGA < 41bp 0.475654405398552 0.771898493172585 0.8045393 0.92387867 prediction 0.54379698634517 Functional Gain - ZACN ENSG00000186919 CDS Human protein_coding chr17:74076402 chr17:74076406 nonsynonymous SNV 0.168 0 25 hm5C_associated_SNPs_104779 0 0 0 0 2 ZACN chr17:74076336 3'AG 74076336 Downstream 71bp
chr17 74076406 74076406 1 + C G LUAD 74076402 + 74076382 74076422 41 CAGGACGGCCACGTGAAGCTCAACCTGGCCCTCGCCACGGA CAGGACGGCCACGTGAAGCTCAACGTGGCCCTCGCCACGGA < 41bp 0.475654405398552 0.771898493172585 0.8045393 0.92387867 prediction 0.54379698634517 Functional Gain - ZACN ENSG00000186919 CDS Human protein_coding chr17:74076402 chr17:74076406 nonsynonymous SNV 0.168 0 25 hm5C_associated_SNPs_104779 0 0 0 0 2 ZACN chr17:74076505 5'GT 74076505 Upstream 100bp
chrX 77373615 77373615 1 + T A KIRC 77373611 + 77373591 77373631 41 TTGATGAAGAAGGAGCTGAACTACTTTGCAAAGGCCTTGGA TTGATGAAGAAGGAGCTGAACTACATTGCAAAGGCCTTGGA < 41bp 0.59994199506846 0.871807465703838 0.08433035 0.45817 prediction 0.543730941270756 Functional Gain - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77373611 chrX:77373615 nonsynonymous SNV 0.981 5 25 hm5C_associated_SNPs_104782 0 0 1 0 2 PGK1 chrX:77373548 3'AG 77373548 Downstream 68bp
chrX 77373615 77373615 1 + T A KIRC 77373611 + 77373591 77373631 41 TTGATGAAGAAGGAGCTGAACTACTTTGCAAAGGCCTTGGA TTGATGAAGAAGGAGCTGAACTACATTGCAAAGGCCTTGGA < 41bp 0.59994199506846 0.871807465703838 0.08433035 0.45817 prediction 0.543730941270756 Functional Gain - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77373611 chrX:77373615 nonsynonymous SNV 0.981 5 25 hm5C_associated_SNPs_104782 0 0 1 0 2 PGK1 chrX:77373667 5'GT 77373667 Upstream 53bp
chr3 101498114 101498114 1 + C A rs555572749 101498110 + 101498090 101498130 41 GCGGCCTGGCGCTGCGGCGACCGACCGGGGCGTCAGGATCC GCGGCCTGGCGCTGCGGCGACCGAACGGGGCGTCAGGATCC < 41bp 0.446787598764617 0.771814966841418 0.78219616 0.8965297 prediction 0.543629933682836 Functional Gain - NXPE3 ENSG00000144815 UTR5 Human protein_coding chr3:101498110 chr3:101498114 . . 0 25 hm5C_associated_SNPs_104788 0 0 1 0 1 NXPE3 chr3:101498168 5'GT 101498168 Upstream 55bp
chr12 10339129 10339129 1 + C A LUAD 10339125 + 10339105 10339145 41 ATGGGGAAGATGGGGGCCCACCACCCTGTGAAGTGACCGTC ATGGGGAAGATGGGGGCCCACCACACTGTGAAGTGACCGTC < 41bp 0.354390049856996 0.771760641032633 0.21220657 0.35448223 prediction 0.543521282065266 Functional Gain - TMEM52B ENSG00000165685 CDS Human protein_coding chr12:10339125 chr12:10339129 nonsynonymous SNV 0.080 4 25 hm5C_associated_SNPs_104790 0 0 0 0 1 TMEM52B chr12:10339188 5'GT 10339188 Upstream 60bp
chr12 54338822 54338822 1 + C A OV 54338818 + 54338798 54338838 41 CAGCCCGAGGTGAGCAGCTACCGGCGCGGGCGCAAGAAACG CAGCCCGAGGTGAGCAGCTACCGGAGCGGGCGCAAGAAACG < 41bp 0.392688868372775 0.771740524698222 0.89194363 0.90918326 prediction 0.543481049396443 Functional Gain - HOXC13 ENSG00000123364 CDS Human protein_coding chr12:54338818 chr12:54338822 nonsynonymous SNV 0.996 5 25 hm5C_associated_SNPs_104791 0 0 0 0 1 HOXC13 chr12:54338784 3'AG 54338784 Downstream 39bp
chr1 155289612 155289612 1 + C T STAD 155289611 + 155289591 155289631 41 TACCTTGACCTCTTTGGGGACCCCAGTGTGACCGGCAAAAT TACCTTGACCTCTTTGGGGACTCCAGTGTGACCGGCAAAAT < 41bp 0.501264117023816 0.772959938220018 0.12546423 0.93026173 prediction 0.543391642392404 Functional Gain - FDPS ENSG00000160752 CDS Human protein_coding chr1:155289611 chr1:155289612 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_104795 0 0 1 0 1 FDPS chr1:155289585 3'AG 155289585 Downstream 28bp
chr7 48092478 48092478 1 + C A GBM 48092474 + 48092454 48092494 41 GAAGGTCCCCAGGATGCAGCCAGGCTCCAGGATGCAGAGGC GAAGGTCCCCAGGATGCAGCCAGGATCCAGGATGCAGAGGC < 41bp 0.632337576502199 0.904031321231245 0.5138656 0.82941395 prediction 0.543387489458092 Functional Gain - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48092474 chr7:48092478 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_104796 0 0 0 0 1 C7orf57 chr7:48092520 5'GT 48092520 Upstream 43bp
chr4 110415851 110415851 1 + T C COAD 110415849 + 110415829 110415869 41 TGCTTCTGCTCCAGCTCCAGCTTCAGCTCCAGCTCCTGTCG TGCTTCTGCTCCAGCTCCAGCTCCAGCTCCAGCTCCTGTCG < 41bp 0.491815598356781 0.771624045489264 0.0475519 0.47154006 prediction 0.543248090978528 Functional Gain - SEC24B ENSG00000138802 CDS Human protein_coding chr4:110415849 chr4:110415851 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_104800 0 0 1 0 1 SEC24B chr4:110415771 3'AG 110415771 Downstream 81bp
chr12 6554685 6554685 1 + C A KIRC 6554681 + 6554661 6554701 41 TCCTTCTCTCCTGACCACCACACCCGGCCCCACTGTGAGAG TCCTTCTCTCCTGACCACCACACCAGGCCCCACTGTGAGAG < 41bp 0.337524487064753 0.771584803967384 0.20068502 0.33536962 prediction 0.543169607934768 Functional Gain - CD27 ENSG00000139193 CDS Human protein_coding chr12:6554681 chr12:6554685 synonymous SNV . 0 25 hm5C_associated_SNPs_104803 0 0 0 0 2 CD27 chr12:6554590 3'AG 6554590 Downstream 96bp
chr12 6554685 6554685 1 + C A KIRC 6554681 + 6554661 6554701 41 TCCTTCTCTCCTGACCACCACACCCGGCCCCACTGTGAGAG TCCTTCTCTCCTGACCACCACACCAGGCCCCACTGTGAGAG < 41bp 0.337524487064753 0.771584803967384 0.20068502 0.33536962 prediction 0.543169607934768 Functional Gain - CD27 ENSG00000139193 CDS Human protein_coding chr12:6554681 chr12:6554685 synonymous SNV . 0 25 hm5C_associated_SNPs_104803 0 0 0 0 2 CD27 chr12:6554721 5'GT 6554721 Upstream 37bp
chr1 86913242 86913242 1 + C G UCEC 86913241 + 86913221 86913261 41 ACCCATCATTCTCTGCAAGCCCTGAAAGTGACAGTGACCTC ACCCATCATTCTCTGCAAGCCGTGAAAGTGACAGTGACCTC < 41bp 0.467680204840579 0.771548962894477 0.011532962 0.087187916 prediction 0.543097925788955 Functional Gain - CLCA2 ENSG00000137975 CDS Human protein_coding chr1:86913241 chr1:86913242 nonsynonymous SNV 0.987 3 22 hm5C_associated_SNPs_104806 0 0 0 0 1 CLCA2 chr1:86913191 3'AG 86913191 Downstream 52bp
chr19 42396861 42396861 1 + C A OV 42396857 + 42396837 42396877 41 TTGGGTTGGGCGGGACCGAGCCAGCTACGAGGCCCGGGAGC TTGGGTTGGGCGGGACCGAGCCAGATACGAGGCCCGGGAGC < 41bp 0.420105220957206 0.771541557762961 0.8928535 0.89570534 prediction 0.543083115525922 Functional Gain - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42396857 chr19:42396861 nonsynonymous SNV 0.137 3 25 hm5C_associated_SNPs_104807 0 0 1 0 1 ARHGEF1 chr19:42396920 5'GT 42396920 Upstream 60bp
chr1 26524503 26524503 1 + C A rs199601379 26524499 + 26524479 26524519 41 GTGGAGCCCCTCGCCCGGATCATCCGCGTCATCCTGCAGTC GTGGAGCCCCTCGCCCGGATCATCAGCGTCATCCTGCAGTC < 41bp 0.349773998845844 0.77153631897911 0.19637042 0.33127975 prediction 0.54307263795822 Functional Gain - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26524499 chr1:26524503 nonsynonymous SNV 0.323 3 25 hm5C_associated_SNPs_104808 0 0 0 0 2 CATSPER4 chr1:26524448 3'AG 26524448 Downstream 56bp
chr1 26524503 26524503 1 + C A rs199601379 26524499 + 26524479 26524519 41 GTGGAGCCCCTCGCCCGGATCATCCGCGTCATCCTGCAGTC GTGGAGCCCCTCGCCCGGATCATCAGCGTCATCCTGCAGTC < 41bp 0.349773998845844 0.77153631897911 0.19637042 0.33127975 prediction 0.54307263795822 Functional Gain - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26524499 chr1:26524503 nonsynonymous SNV 0.323 3 25 hm5C_associated_SNPs_104808 0 0 0 0 2 CATSPER4 chr1:26524568 5'GT 26524568 Upstream 66bp
chr7 5112057 5112057 1 + C G rs182833256 5112056 + 5112036 5112076 41 TGCTGCTGCTCCCGGCCGCCCCGGTCCCCACCGCCAAAGCC TGCTGCTGCTCCCGGCCGCCCGGGTCCCCACCGCCAAAGCC < 41bp 0.459026855010991 0.771503460911471 0.36024272 0.8610438 prediction 0.543006921822941 Functional Gain - RBAK-RBAKDN ENSG00000272968 CDS Human protein_coding chr7:5112056 chr7:5112057 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_104810 0 0 0 0 2 RBAK-RBAKDN chr7:5111993 3'AG 5111993 Downstream 65bp
chr7 5112057 5112057 1 + C G rs182833256 5112056 + 5112036 5112076 41 TGCTGCTGCTCCCGGCCGCCCCGGTCCCCACCGCCAAAGCC TGCTGCTGCTCCCGGCCGCCCGGGTCCCCACCGCCAAAGCC < 41bp 0.459026855010991 0.771503460911471 0.36024272 0.8610438 prediction 0.543006921822941 Functional Gain - RBAK-RBAKDN ENSG00000272968 CDS Human protein_coding chr7:5112056 chr7:5112057 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_104810 0 0 0 0 2 RBAKDN chr7:5112128 5'GT 5112128 Upstream 72bp
chr2 228680239 228680239 1 + T C UCEC 228680237 + 228680217 228680257 41 CATCCTAAATTTATTGTGGGCTTCACACGGCAGCTGGCCAA CATCCTAAATTTATTGTGGGCTCCACACGGCAGCTGGCCAA < 41bp 0.533980737408967 0.805448713698032 0.054059327 0.20039806 prediction 0.542935952578129 Functional Gain - CCL20 ENSG00000115009 CDS Human protein_coding chr2:228680237 chr2:228680239 nonsynonymous SNV 0.793 4 23 hm5C_associated_SNPs_104814 0 0 1 0 3 CCL20 chr2:228680170 3'AG 228680170 Downstream 70bp
chr2 228680239 228680239 1 + T C UCEC 228680237 + 228680217 228680257 41 CATCCTAAATTTATTGTGGGCTTCACACGGCAGCTGGCCAA CATCCTAAATTTATTGTGGGCTCCACACGGCAGCTGGCCAA < 41bp 0.533980737408967 0.805448713698032 0.054059327 0.20039806 prediction 0.542935952578129 Functional Gain - CCL20 ENSG00000115009 CDS Human protein_coding chr2:228680237 chr2:228680239 nonsynonymous SNV 0.793 4 23 hm5C_associated_SNPs_104814 0 0 1 0 3 CCL20 chr2:228680173 3'AG 228680173 Downstream 67bp
chr2 228680239 228680239 1 + T C UCEC 228680237 + 228680217 228680257 41 CATCCTAAATTTATTGTGGGCTTCACACGGCAGCTGGCCAA CATCCTAAATTTATTGTGGGCTCCACACGGCAGCTGGCCAA < 41bp 0.533980737408967 0.805448713698032 0.054059327 0.20039806 prediction 0.542935952578129 Functional Gain - CCL20 ENSG00000115009 CDS Human protein_coding chr2:228680237 chr2:228680239 nonsynonymous SNV 0.793 4 23 hm5C_associated_SNPs_104814 0 0 1 0 3 CCL20 chr2:228680284 5'GT 228680284 Upstream 46bp
chr1 45092025 45092025 1 + C A rs76104973 45092021 + 45092001 45092041 41 AGGAGAGTCTCCAACGGCATCACCCCACTCATCTGCCACCG AGGAGAGTCTCCAACGGCATCACCACACTCATCTGCCACCG < 41bp 0.338420137108338 0.771405015405156 0.22797999 0.31394327 prediction 0.542810030810313 Functional Gain - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45092021 chr1:45092025 synonymous SNV . 0 25 hm5C_associated_SNPs_104820 0 0 0 0 2 RNF220 chr1:45091969 3'AG 45091969 Downstream 57bp
chr1 45092025 45092025 1 + C A rs76104973 45092021 + 45092001 45092041 41 AGGAGAGTCTCCAACGGCATCACCCCACTCATCTGCCACCG AGGAGAGTCTCCAACGGCATCACCACACTCATCTGCCACCG < 41bp 0.338420137108338 0.771405015405156 0.22797999 0.31394327 prediction 0.542810030810313 Functional Gain - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45092021 chr1:45092025 synonymous SNV . 0 25 hm5C_associated_SNPs_104820 0 0 0 0 2 RNF220 chr1:45092070 5'GT 45092070 Upstream 46bp
chr16 67685181 67685181 1 + C G rs181904109 67685177 + 67685157 67685197 41 AGGGTGAAGCCGCTGTGCGCCAGGCCGAGGATGCCATCCAA AGGGTGAAGCCGCTGTGCGCCAGGGCGAGGATGCCATCCAA < 41bp 0.529642922052291 0.801046142323474 0.57479525 0.8650905 prediction 0.542806440542365 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67685177 chr16:67685181 nonsynonymous SNV 0.228 3 25 hm5C_associated_SNPs_104821 0 0 0 0 1 CARMIL2 chr16:67685090 3'AG 67685090 Downstream 92bp
chr8 30977881 30977881 1 + T C rs3087432 30977879 + 30977859 30977899 41 AGGAGATTGGTAGAGCTGGTCGTGATGGACTTCAAAGTTCT AGGAGATTGGTAGAGCTGGTCGCGATGGACTTCAAAGTTCT < 41bp 0.526917336867855 0.798209505395365 0.29781407 0.2971261 prediction 0.54258433705502 Functional Gain - WRN ENSG00000165392 CDS Human protein_coding chr8:30977879 chr8:30977881 synonymous SNV . 0 23 hm5C_associated_SNPs_104828 1 0 1 0 1 WRN chr8:30977940 5'GT 30977940 Upstream 60bp
chrX 47045024 47045024 1 + C G BLCA 47045023 + 47045003 47045043 41 CACCAGCAGCTCTCAGGGCTCCACAAGGTAACAGCGGATGG CACCAGCAGCTCTCAGGGCTCGACAAGGTAACAGCGGATGG < 41bp 0.460824493885783 0.771287865880444 0.28825438 0.24411508 prediction 0.542575731760888 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47045023 chrX:47045024 nonsynonymous SNV 0.853 4 22 hm5C_associated_SNPs_104830 0 0 1 0 1 RBM10 chrX:47045029 5'GT 47045029 Upstream 6bp
chr3 195636776 195636776 1 + C G rs79414530 195636775 + 195636755 195636795 41 CTCTCCCCGACTCCCCCGGGCCCGGCCTGCGCCTTCCTGCG CTCTCCCCGACTCCCCCGGGCGCGGCCTGCGCCTTCCTGCG < 41bp 0.490516208157788 0.771283802711563 0.19644058 0.38559067 prediction 0.542567605423126 Functional Gain - TNK2-AS1 ENSG00000224614 ncRNA_exonic Human antisense chr3:195636775 chr3:195636776 . . 0 22 hm5C_associated_SNPs_104831 0 0 0 0 1 TNK2-AS1 chr3:195636736 3'AG 195636736 Downstream 41bp
chr17 685846 685846 1 + C G rs75116507 685842 + 685822 685862 41 GGAGCAACGAGAGAAACAACCGCTCGAGGAGTCCGCATCCC GGAGCAACGAGAGAAACAACCGCTGGAGGAGTCCGCATCCC < 41bp 0.505103071430757 0.776362932876737 0.10498306 0.22061563 prediction 0.54251972289196 Functional Gain - MRM3 ENSG00000171861 CDS Human protein_coding chr17:685842 chr17:685846 synonymous SNV 0.002 0 25 hm5C_associated_SNPs_104833 0 0 0 0 1 MRM3 chr17:685932 5'GT 685932 Upstream 87bp
chr16 69202770 69202770 1 + T G OV 69202767 + 69202747 69202787 41 GGATGAAAGAACACTCGTGGCAGTAGAACGGCCTCTGGATG GGATGAAAGAACACTCGTGGCAGGAGAACGGCCTCTGGATG < 41bp 0.624734230992438 0.895988237964893 0.22531688 0.7511436 prediction 0.542508013944911 Functional Gain - UTP4 ENSG00000141076 CDS Human protein_coding chr16:69202767 chr16:69202770 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_104836 0 0 1 0 1 UTP4 chr16:69202724 3'AG 69202724 Downstream 47bp
chr22 18065397 18065397 1 + C G LUAD 18065396 + 18065376 18065416 41 CTGGCGGCCAACGACTTTTTCCGGCGGCTGCTCATGGAAGA CTGGCGGCCAACGACTTTTTCGGGCGGCTGCTCATGGAAGA < 41bp 0.575978396762277 0.847225877431184 0.8691439 0.92619777 prediction 0.542494961337814 Functional Gain - SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18065396 chr22:18065397 nonsynonymous SNV 0.982 4 22 hm5C_associated_SNPs_104838 0 0 0 0 2 SLC25A18 chr22:18065329 3'AG 18065329 Downstream 69bp
chr22 18065397 18065397 1 + C G LUAD 18065396 + 18065376 18065416 41 CTGGCGGCCAACGACTTTTTCCGGCGGCTGCTCATGGAAGA CTGGCGGCCAACGACTTTTTCGGGCGGCTGCTCATGGAAGA < 41bp 0.575978396762277 0.847225877431184 0.8691439 0.92619777 prediction 0.542494961337814 Functional Gain - SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18065396 chr22:18065397 nonsynonymous SNV 0.982 4 22 hm5C_associated_SNPs_104838 0 0 0 0 2 SLC25A18 chr22:18065419 5'GT 18065419 Upstream 23bp
chr5 95188399 95188399 1 + C G rs2546196 95188395 + 95188375 95188415 41 ACAGTCCAGGCCATGACAAGCTGGCACCCAGCTCTGCTTCA ACAGTCCAGGCCATGACAAGCTGGGACCCAGCTCTGCTTCA < 41bp 0.514351759621803 0.785593526407392 0.1771768 0.5673698 prediction 0.542483533571178 Functional Gain - LINC01554 ENSG00000251409 ncRNA_exonic Human lincRNA chr5:95188395 chr5:95188399 . . 0 25 hm5C_associated_SNPs_104839 0 0 0 0 1 LINC01554 chr5:95188418 5'GT 95188418 Upstream 20bp
chr1 43775130 43775130 1 + C G LUSC 43775126 + 43775106 43775146 41 GGTGCCCCGCTTGGTTCTTGCGGACAGTGGGTTCTGGGAGT GGTGCCCCGCTTGGTTCTTGCGGAGAGTGGGTTCTGGGAGT < 41bp 0.476315744291105 0.771228656141877 0.90027916 0.9269327 prediction 0.542457312283753 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43775126 chr1:43775130 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_104842 0 0 0 0 1 TIE1 chr1:43775059 3'AG 43775059 Downstream 72bp
chr1 205033503 205033503 1 + C G BLCA 205033502 + 205033482 205033522 41 AGGCGTCTGATCCCCGCGGCCCGCGGGGGAGAGATCCTTAT AGGCGTCTGATCCCCGCGGCCGGCGGGGGAGAGATCCTTAT < 41bp 0.456629188492898 0.771217412356096 0.2337293 0.8568383 prediction 0.542434824712192 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205033502 chr1:205033503 nonsynonymous SNV 0.764 3 22 hm5C_associated_SNPs_104843 0 0 0 0 2 CNTN2 chr1:205033450 3'AG 205033450 Downstream 54bp
chr1 205033503 205033503 1 + C G BLCA 205033502 + 205033482 205033522 41 AGGCGTCTGATCCCCGCGGCCCGCGGGGGAGAGATCCTTAT AGGCGTCTGATCCCCGCGGCCGGCGGGGGAGAGATCCTTAT < 41bp 0.456629188492898 0.771217412356096 0.2337293 0.8568383 prediction 0.542434824712192 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205033502 chr1:205033503 nonsynonymous SNV 0.764 3 22 hm5C_associated_SNPs_104843 0 0 0 0 2 CNTN2 chr1:205033600 5'GT 205033600 Upstream 98bp
chr16 76482693 76482693 1 + C A LUSC 76482689 + 76482669 76482709 41 GCTAAACTGCCTTCCACTTCCACCCTGGTCAATCTCACCCT GCTAAACTGCCTTCCACTTCCACCATGGTCAATCTCACCCT < 41bp 0.351904786161556 0.771213562614935 0.18614516 0.39539924 prediction 0.54242712522987 Functional Gain - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76482689 chr16:76482693 nonsynonymous SNV 0.146 0 25 hm5C_associated_SNPs_104844 0 0 0 0 1 CNTNAP4 chr16:76482664 3'AG 76482664 Downstream 30bp
chr7 102553545 102553545 1 - A C rs114626804 102553548 - 102553528 102553568 41 AAGCTCATCTATCTGGACCTCTCTGGCTGCACCCAGGTTTG AAGCTCATCTATCTGGACCTCTCGGGCTGCACCCAGGTTTG < 41bp 0.393124855559924 0.771191438774175 0.12779626 0.14664727 prediction 0.54238287754835 Functional Gain - FBXL13 ENSG00000161040 CDS Human protein_coding chr7:102553548 chr7:102553545 synonymous SNV . 0 24 hm5C_associated_SNPs_104848 0 0 1 0 1 FBXL13 chr7:102553533 5'GT 102553533 Upstream 13bp
chr22 25627595 25627595 1 + C G OV 25627591 + 25627571 25627611 41 GTGGGTTGGCTACCAGTACCCCGGCTACCGTGGGCTGCAGT GTGGGTTGGCTACCAGTACCCCGGGTACCGTGGGCTGCAGT < 41bp 0.496168643855072 0.771171048042451 0.32338732 0.9149709 prediction 0.542342096084903 Functional Gain - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25627591 chr22:25627595 synonymous SNV . 0 25 hm5C_associated_SNPs_104850 0 0 1 0 1 CRYBB2 chr22:25627571 3'AG 25627571 Downstream 25bp
chr16 85645089 85645089 1 + C A rs534569279 85645085 + 85645065 85645105 41 CCGCCGGTGAGCTGGCGGGTCGTGCGGGGAAGCAGCACCCC CCGCCGGTGAGCTGGCGGGTCGTGAGGGGAAGCAGCACCCC < 41bp 0.554195830668922 0.825349862343001 0.89980274 0.90782785 prediction 0.542308063348158 Functional Gain - GSE1 ENSG00000131149 UTR5 Human protein_coding chr16:85645085 chr16:85645089 . . 0 25 hm5C_associated_SNPs_104851 0 0 1 0 1 GSE1 chr16:85645137 5'GT 85645137 Upstream 49bp
chr11 43345053 43345053 1 + C A HNSC 43345049 + 43345029 43345069 41 TGTCTGGGTTAAAAAGCTTACAGACAGTGAGTGGAAGACAG TGTCTGGGTTAAAAAGCTTACAGAAAGTGAGTGGAAGACAG < 41bp 0.387625899106122 0.771120311103634 0.035488874 0.07969868 prediction 0.542240622207269 Functional Gain - API5 ENSG00000166181 CDS Human protein_coding chr11:43345049 chr11:43345053 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_104854 0 0 1 0 1 API5 chr11:43344980 3'AG 43344980 Downstream 74bp
chr16 28847312 28847312 1 + C A COAD 28847308 + 28847288 28847328 41 CCCCTCACCCTGGGGCTCCCCACCCGCCCCAGGTGATGCTG CCCCTCACCCTGGGGCTCCCCACCAGCCCCAGGTGATGCTG < 41bp 0.634721148887659 0.905835989991917 0.092215836 0.12887427 prediction 0.542229682208516 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28847308 chr16:28847312 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_104855 0 0 1 0 1 ATXN2L chr16:28847254 3'AG 28847254 Downstream 59bp
chr19 39592142 39592142 1 + C A LUAD 39592138 + 39592118 39592158 41 AGCCGAGAGATGCCCTACACCAACCCGCGAGGGCCTGTCCA AGCCGAGAGATGCCCTACACCAACACGCGAGGGCCTGTCCA < 41bp 0.346078141258724 0.771067248720594 0.024461389 0.024538875 prediction 0.542134497441189 Functional Gain - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39592138 chr19:39592142 nonsynonymous SNV 0.387 2 25 hm5C_associated_SNPs_104862 0 0 0 0 2 ACP7 chr19:39592106 3'AG 39592106 Downstream 37bp
chr19 39592142 39592142 1 + C A LUAD 39592138 + 39592118 39592158 41 AGCCGAGAGATGCCCTACACCAACCCGCGAGGGCCTGTCCA AGCCGAGAGATGCCCTACACCAACACGCGAGGGCCTGTCCA < 41bp 0.346078141258724 0.771067248720594 0.024461389 0.024538875 prediction 0.542134497441189 Functional Gain - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39592138 chr19:39592142 nonsynonymous SNV 0.387 2 25 hm5C_associated_SNPs_104862 0 0 0 0 2 ACP7 chr19:39592177 5'GT 39592177 Upstream 36bp
chr15 23443558 23443558 1 + T G rs533352418 23443556 + 23443536 23443576 41 CTAACGGCCCAGCTGAGCCTCATGGCTCTCCCTGGGGAAGG CTAACGGCCCAGCTGAGCCTCAGGGCTCTCCCTGGGGAAGG < 41bp 0.430170822398454 0.771065517870612 0.3832541 0.9003947 prediction 0.542131035741224 Functional Gain - GOLGA8EP ENSG00000175676 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:23443556 chr15:23443558 . . 0 23 hm5C_associated_SNPs_104863 0 0 0 0 2 GOLGA8EP chr15:23443500 3'AG 23443500 Downstream 59bp
chr15 23443558 23443558 1 + T G rs533352418 23443556 + 23443536 23443576 41 CTAACGGCCCAGCTGAGCCTCATGGCTCTCCCTGGGGAAGG CTAACGGCCCAGCTGAGCCTCAGGGCTCTCCCTGGGGAAGG < 41bp 0.430170822398454 0.771065517870612 0.3832541 0.9003947 prediction 0.542131035741224 Functional Gain - GOLGA8EP ENSG00000175676 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:23443556 chr15:23443558 . . 0 23 hm5C_associated_SNPs_104863 0 0 0 0 2 GOLGA8EP chr15:23443575 5'GT 23443575 Upstream 18bp
chr9 130549811 130549811 1 + C A rs34238383 130549807 + 130549787 130549827 41 TCTCACCCAGTTCCCCATTACAGCCTTGCGGGAGATCAAGA TCTCACCCAGTTCCCCATTACAGCATTGCGGGAGATCAAGA < 41bp 0.35211620499472 0.771062462269803 0.121130705 0.16510132 prediction 0.542124924539607 Functional Gain - CDK9 ENSG00000136807 CDS Human protein_coding chr9:130549807 chr9:130549811 synonymous SNV . 0 25 hm5C_associated_SNPs_104864 0 0 1 0 2 CDK9 chr9:130549797 3'AG 130549797 Downstream 15bp
chr9 130549811 130549811 1 + C A rs34238383 130549807 + 130549787 130549827 41 TCTCACCCAGTTCCCCATTACAGCCTTGCGGGAGATCAAGA TCTCACCCAGTTCCCCATTACAGCATTGCGGGAGATCAAGA < 41bp 0.35211620499472 0.771062462269803 0.121130705 0.16510132 prediction 0.542124924539607 Functional Gain - CDK9 ENSG00000136807 CDS Human protein_coding chr9:130549807 chr9:130549811 synonymous SNV . 0 25 hm5C_associated_SNPs_104864 0 0 1 0 2 CDK9 chr9:130549887 5'GT 130549887 Upstream 77bp
chr16 3198392 3198392 1 + C G rs73492472 3198388 + 3198368 3198408 41 AGACATCCTGACGGTCTACTCAGCCGCAGAGGGTAAGGAGA AGACATCCTGACGGTCTACTCAGCGGCAGAGGGTAAGGAGA < 41bp 0.524638308021077 0.795700059895758 0.33283013 0.8707103 prediction 0.542123503749363 Functional Gain - CASP16P ENSG00000228146 CDS Human transcribed_unprocessed_pseudogene chr16:3198388 chr16:3198392 synonymous SNV . 0 25 hm5C_associated_SNPs_104865 0 0 0 0 1 CASP16P chr16:3198325 3'AG 3198325 Downstream 68bp
chr10 12160849 12160849 1 + T A LAML 12160845 + 12160825 12160865 41 AGCATGACTTTGCCATCATCCGAGTAGAGGAACTCTGCCCC AGCATGACTTTGCCATCATCCGAGAAGAGGAACTCTGCCCC < 41bp 0.58418767447975 0.855247939982132 0.768007 0.84287167 prediction 0.542120531004764 Functional Gain - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12160845 chr10:12160849 nonsynonymous SNV 0.908 1 25 hm5C_associated_SNPs_104866 0 0 1 0 1 DHTKD1 chr10:12160917 5'GT 12160917 Upstream 69bp
chr19 39963891 39963891 1 + C A MESO 39963887 + 39963867 39963907 41 GACCTCGACCTATGGGAGGACGCCCATGTATGGCTCCCAGA GACCTCGACCTATGGGAGGACGCCAATGTATGGCTCCCAGA < 41bp 0.346601280160096 0.771055935760642 0.13110352 0.88115895 prediction 0.542111871521285 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39963887 chr19:39963891 synonymous SNV . 0 25 hm5C_associated_SNPs_104868 0 0 1 0 2 SUPT5H chr19:39963843 3'AG 39963843 Downstream 49bp
chr19 39963891 39963891 1 + C A MESO 39963887 + 39963867 39963907 41 GACCTCGACCTATGGGAGGACGCCCATGTATGGCTCCCAGA GACCTCGACCTATGGGAGGACGCCAATGTATGGCTCCCAGA < 41bp 0.346601280160096 0.771055935760642 0.13110352 0.88115895 prediction 0.542111871521285 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39963887 chr19:39963891 synonymous SNV . 0 25 hm5C_associated_SNPs_104868 0 0 1 0 2 SUPT5H chr19:39963970 5'GT 39963970 Upstream 80bp
chr6 159178409 159178409 1 + C A rs111645988 159178405 + 159178385 159178425 41 CCTTCCGCTGGCATCCGCTCCGGGCCAAGGTGATGTCTGGT CCTTCCGCTGGCATCCGCTCCGGGACAAGGTGATGTCTGGT < 41bp 0.359502732233292 0.771014881698305 0.86502755 0.89091766 prediction 0.54202976339661 Functional Gain - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159178405 chr6:159178409 nonsynonymous SNV 0.970 0 25 hm5C_associated_SNPs_104869 0 0 0 0 1 SYTL3 chr6:159178413 5'GT 159178413 Upstream 5bp
chr13 31480912 31480912 1 + T G STAD 31480910 + 31480890 31480930 41 CTCGACGGGCAGCTCTACCGCCTCAGCAGCTACATCAAGAG CTCGACGGGCAGCTCTACCGCCGCAGCAGCTACATCAAGAG < 41bp 0.435649039815125 0.770974973346961 0.085170954 0.3047711 prediction 0.541949946693923 Functional Gain - MEDAG ENSG00000102802 CDS Human protein_coding chr13:31480910 chr13:31480912 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_104876 0 0 0 0 1 MEDAG chr13:31480930 5'GT 31480930 Upstream 19bp
chr10 13151216 13151216 1 + C G LUAD 13151215 + 13151195 13151235 41 CCCCACCTGGCCCACCCAAACCTGGACACGTTTACCCCGGA CCCCACCTGGCCCACCCAAACGTGGACACGTTTACCCCGGA < 41bp 0.464346900075268 0.770948029044022 0.4043489 0.87444454 prediction 0.541896058088044 Functional Gain - OPTN ENSG00000123240 CDS Human protein_coding chr10:13151215 chr10:13151216 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_104878 0 0 1 0 1 OPTN chr10:13151288 5'GT 13151288 Upstream 73bp
chr15 68118364 68118364 1 + C A UCEC 68118360 + 68118340 68118380 41 CTCCAAGCAGGAGCTGCAGCCGTACTCGGGCTCCAGCGCTC CTCCAAGCAGGAGCTGCAGCCGTAATCGGGCTCCAGCGCTC < 41bp 0.37610249256781 0.770939656519792 0.87098014 0.8061639 prediction 0.541879313039584 Functional Gain - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68118360 chr15:68118364 stopgain 0.994 1 25 hm5C_associated_SNPs_104880 0 0 0 0 1 SKOR1 chr15:68118274 3'AG 68118274 Downstream 91bp
chr5 138163226 138163226 1 + T C DLBC 138163224 + 138163204 138163244 41 AAACAAATCATTGTGGACCCCTTGAGCTTCAGCGAGGAGCG AAACAAATCATTGTGGACCCCTCGAGCTTCAGCGAGGAGCG < 41bp 0.538037186238995 0.808959852770044 0.08825612 0.4052881 prediction 0.541845333062098 Functional Gain - CTNNA1 ENSG00000044115 CDS Human protein_coding chr5:138163224 chr5:138163226 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_104881 0 0 1 0 1 CTNNA1 chr5:138163204 3'AG 138163204 Downstream 23bp
chr6 10726190 10726190 1 + C A COAD 10726186 + 10726166 10726206 41 CTGCTCTTTGGCAGTCTAGCCGGCCTGGGTGCTTACCAGCT CTGCTCTTTGGCAGTCTAGCCGGCATGGGTGCTTACCAGCT < 41bp 0.644970709606658 0.915885948007007 0.6745941 0.8768221 prediction 0.541830476800698 Functional Gain - TMEM14C ENSG00000111843 CDS Human protein_coding chr6:10726186 chr6:10726190 nonsynonymous SNV 0.585 4 25 hm5C_associated_SNPs_104883 0 0 1 0 2 TMEM14C chr6:10726140 3'AG 10726140 Downstream 51bp
chr6 10726190 10726190 1 + C A COAD 10726186 + 10726166 10726206 41 CTGCTCTTTGGCAGTCTAGCCGGCCTGGGTGCTTACCAGCT CTGCTCTTTGGCAGTCTAGCCGGCATGGGTGCTTACCAGCT < 41bp 0.644970709606658 0.915885948007007 0.6745941 0.8768221 prediction 0.541830476800698 Functional Gain - TMEM14C ENSG00000111843 CDS Human protein_coding chr6:10726186 chr6:10726190 nonsynonymous SNV 0.585 4 25 hm5C_associated_SNPs_104883 0 0 1 0 2 TMEM14C chr6:10726241 5'GT 10726241 Upstream 52bp
chr16 2278405 2278405 1 + C G LGG 2278404 + 2278384 2278424 41 GTGCACAGATGCGGCCGCTGCCAGGCAGAGTTCACCGCCTT GTGCACAGATGCGGCCGCTGCGAGGCAGAGTTCACCGCCTT < 41bp 0.567927681093786 0.838841146279342 0.5467209 0.765658 prediction 0.541826930371111 Functional Gain - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2278404 chr16:2278405 nonsynonymous SNV 0.987 1 22 hm5C_associated_SNPs_104885 0 0 1 0 1 E4F1 chr16:2278373 3'AG 2278373 Downstream 33bp
chr4 187078819 187078819 1 + C G rs2276923 187078815 + 187078795 187078835 41 CGATGGAGCCAGTGGCCCCCCGTCCGGACACGCCGAGGCTC CGATGGAGCCAGTGGCCCCCCGTCGGGACACGCCGAGGCTC < 41bp 0.523121428584844 0.79402672999794 0.20604602 0.08254489 prediction 0.541810602826191 Functional Gain - FAM149A ENSG00000109794 CDS Human protein_coding chr4:187078815 chr4:187078819 synonymous SNV . 0 25 hm5C_associated_SNPs_104886 0 0 0 0 1 FAM149A chr4:187078873 5'GT 187078873 Upstream 55bp
chr17 72305492 72305492 1 - A C BLCA 72305494 - 72305474 72305514 41 GTGGGATCGCACTGCTCGAACATGAAGTCCCAGATATCCAG GTGGGATCGCACTGCTCGAACAGGAAGTCCCAGATATCCAG < 41bp 0.595134123525201 0.866021264639332 0.13688946 0.5378037 prediction 0.541774282228261 Functional Gain - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72305494 chr17:72305492 nonsynonymous SNV 0.942 0 23 hm5C_associated_SNPs_104890 0 0 0 0 1 DNAI2 chr17:72305408 5'GT 72305408 Upstream 85bp
chr12 56532198 56532198 1 + T A STAD 56532194 + 56532174 56532214 41 GTGCCCCTCCACAGGTGCTGCAGGTGAATAGTTTGATCCAG GTGCCCCTCCACAGGTGCTGCAGGAGAATAGTTTGATCCAG < 41bp 0.560067404164828 0.830912035394551 0.7798028 0.7195537 prediction 0.541689262459447 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532194 chr12:56532198 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_104893 0 0 0 0 2 ESYT1 chr12:56532188 3'AG 56532188 Downstream 11bp
chr12 56532198 56532198 1 + T A STAD 56532194 + 56532174 56532214 41 GTGCCCCTCCACAGGTGCTGCAGGTGAATAGTTTGATCCAG GTGCCCCTCCACAGGTGCTGCAGGAGAATAGTTTGATCCAG < 41bp 0.560067404164828 0.830912035394551 0.7798028 0.7195537 prediction 0.541689262459447 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532194 chr12:56532198 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_104893 0 0 0 0 2 ESYT1 chr12:56532283 5'GT 56532283 Upstream 86bp
chr3 36527679 36527679 1 + C A THCA 36527675 + 36527655 36527695 41 GAGACCCTCCGCTTCGGCACCTCCCTGGCCCAGAGGACAAA GAGACCCTCCGCTTCGGCACCTCCATGGCCCAGAGGACAAA < 41bp 0.327010330925805 0.77082868962565 0.01213634 0.968964 prediction 0.5416573792513 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36527675 chr3:36527679 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_104896 0 0 0 0 2 STAC chr3:36527626 3'AG 36527626 Downstream 54bp
chr3 36527679 36527679 1 + C A THCA 36527675 + 36527655 36527695 41 GAGACCCTCCGCTTCGGCACCTCCCTGGCCCAGAGGACAAA GAGACCCTCCGCTTCGGCACCTCCATGGCCCAGAGGACAAA < 41bp 0.327010330925805 0.77082868962565 0.01213634 0.968964 prediction 0.5416573792513 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36527675 chr3:36527679 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_104896 0 0 0 0 2 STAC chr3:36527741 5'GT 36527741 Upstream 63bp
chr2 232011036 232011036 1 + T C LIHC 232011034 + 232011014 232011054 41 GCACTCATAGCTTCAGCTCTCATCATGATCCAGCAGACTGA GCACTCATAGCTTCAGCTCTCACCATGATCCAGCAGACTGA < 41bp 0.534217002116242 0.805002830495775 0.026316226 0.028691173 prediction 0.541571656759067 Functional Gain - PSMD1 ENSG00000173692 CDS Human protein_coding chr2:232011034 chr2:232011036 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_104898 0 0 1 0 2 PSMD1 chr2:232010954 3'AG 232010954 Downstream 83bp
chr2 232011036 232011036 1 + T C LIHC 232011034 + 232011014 232011054 41 GCACTCATAGCTTCAGCTCTCATCATGATCCAGCAGACTGA GCACTCATAGCTTCAGCTCTCACCATGATCCAGCAGACTGA < 41bp 0.534217002116242 0.805002830495775 0.026316226 0.028691173 prediction 0.541571656759067 Functional Gain - PSMD1 ENSG00000173692 CDS Human protein_coding chr2:232011034 chr2:232011036 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_104898 0 0 1 0 2 PSMD1 chr2:232011070 5'GT 232011070 Upstream 35bp
chrX 86877351 86877351 1 + T C LUAD 86877349 + 86877329 86877369 41 CTCTAATGCAGTGGGTGGGGCATGATGTGCAGAATAGGCAA CTCTAATGCAGTGGGTGGGGCACGATGTGCAGAATAGGCAA < 41bp 0.522730205460032 0.793503624161318 0.38508552 0.14241982 prediction 0.541546837402571 Functional Gain - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86877349 chrX:86877351 synonymous SNV . 0 23 hm5C_associated_SNPs_104900 0 0 0 0 1 KLHL4 chrX:86877423 5'GT 86877423 Upstream 73bp
chr15 64422191 64422191 1 + T C UCEC 64422189 + 64422169 64422209 41 TTCAACAAAGCCACAGATGCCGTCAGCAAAATGACCATCAA TTCAACAAAGCCACAGATGCCGCCAGCAAAATGACCATCAA < 41bp 0.486416868798803 0.770769318136637 0.054855347 0.07719159 prediction 0.541538636273273 Functional Gain - SNX1 ENSG00000028528 CDS Human protein_coding chr15:64422189 chr15:64422191 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_104901 0 0 1 0 2 SNX1 chr15:64422115 3'AG 64422115 Downstream 77bp
chr15 64422191 64422191 1 + T C UCEC 64422189 + 64422169 64422209 41 TTCAACAAAGCCACAGATGCCGTCAGCAAAATGACCATCAA TTCAACAAAGCCACAGATGCCGCCAGCAAAATGACCATCAA < 41bp 0.486416868798803 0.770769318136637 0.054855347 0.07719159 prediction 0.541538636273273 Functional Gain - SNX1 ENSG00000028528 CDS Human protein_coding chr15:64422189 chr15:64422191 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_104901 0 0 1 0 2 SNX1 chr15:64422228 5'GT 64422228 Upstream 38bp
chr7 44150570 44150570 1 + T A LUSC 44150566 + 44150546 44150586 41 TGCTGAGTGAGCTCCCAGAGCCGGTGGTGGCTCGTTTCATC TGCTGAGTGAGCTCCCAGAGCCGGAGGTGGCTCGTTTCATC < 41bp 0.450543626672273 0.770759791682154 0.5181603 0.8099475 prediction 0.541519583364308 Functional Gain - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44150566 chr7:44150570 nonsynonymous SNV 0.900 3 25 hm5C_associated_SNPs_104904 0 0 0 0 1 AEBP1 chr7:44150656 5'GT 44150656 Upstream 87bp
chr19 8322868 8322868 1 + C G SKCM 8322864 + 8322844 8322884 41 ACCCGACTGGTCCTCTTTCCCACCCAGTGAGTCAGCCCTCC ACCCGACTGGTCCTCTTTCCCACCGAGTGAGTCAGCCCTCC < 41bp 0.529748961265979 0.800451897537955 0.09158319 0.22532383 prediction 0.541405872543951 Functional Gain - CERS4 ENSG00000090661 CDS Human protein_coding chr19:8322864 chr19:8322868 nonsynonymous SNV 0.223 1 25 hm5C_associated_SNPs_104909 0 0 1 0 1 CERS4 chr19:8322869 5'GT 8322869 Upstream 2bp
chr15 100247002 100247002 1 + C A OV 100246998 + 100246978 100247018 41 TACCCCAGTCGTGTCTGTGACAACCCCAAGCTTGCCTCCGC TACCCCAGTCGTGTCTGTGACAACACCAAGCTTGCCTCCGC < 41bp 0.357710815247613 0.770696214239148 0.088893265 0.23528516 prediction 0.541392428478297 Functional Gain - MEF2A ENSG00000068305 CDS Human protein_coding chr15:100246998 chr15:100247002 synonymous SNV . 0 25 hm5C_associated_SNPs_104912 0 0 1 0 2 MEF2A chr15:100246934 3'AG 100246934 Downstream 69bp
chr15 100247002 100247002 1 + C A OV 100246998 + 100246978 100247018 41 TACCCCAGTCGTGTCTGTGACAACCCCAAGCTTGCCTCCGC TACCCCAGTCGTGTCTGTGACAACACCAAGCTTGCCTCCGC < 41bp 0.357710815247613 0.770696214239148 0.088893265 0.23528516 prediction 0.541392428478297 Functional Gain - MEF2A ENSG00000068305 CDS Human protein_coding chr15:100246998 chr15:100247002 synonymous SNV . 0 25 hm5C_associated_SNPs_104912 0 0 1 0 2 MEF2A chr15:100247060 5'GT 100247060 Upstream 59bp
chr12 109870782 109870782 1 + T C COAD 109870780 + 109870760 109870800 41 GTGGAACGGCTGATCAAGTACATCGGCTACAAACCCGAGGA GTGGAACGGCTGATCAAGTACACCGGCTACAAACCCGAGGA < 41bp 0.497388875467105 0.770652335240559 0.35006595 0.6073582 prediction 0.541304670481118 Functional Gain - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109870780 chr12:109870782 nonsynonymous SNV 0.954 1 23 hm5C_associated_SNPs_104915 0 0 0 0 2 MYO1H chr12:109870702 3'AG 109870702 Downstream 81bp
chr12 109870782 109870782 1 + T C COAD 109870780 + 109870760 109870800 41 GTGGAACGGCTGATCAAGTACATCGGCTACAAACCCGAGGA GTGGAACGGCTGATCAAGTACACCGGCTACAAACCCGAGGA < 41bp 0.497388875467105 0.770652335240559 0.35006595 0.6073582 prediction 0.541304670481118 Functional Gain - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109870780 chr12:109870782 nonsynonymous SNV 0.954 1 23 hm5C_associated_SNPs_104915 0 0 0 0 2 MYO1H chr12:109870815 5'GT 109870815 Upstream 34bp
chr12 51065097 51065097 1 + T G LUAD 51065095 + 51065075 51065115 41 AATTCAGGGATCGTCCACTTCTTCATCCGCATCTTCTACGC AATTCAGGGATCGTCCACTTCTGCATCCGCATCTTCTACGC < 41bp 0.576486980757367 0.847090292557604 0.17961085 0.5422057 prediction 0.541206623600474 Functional Gain - DIP2B ENSG00000066084 CDS Human protein_coding chr12:51065095 chr12:51065097 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_104923 0 0 1 0 1 DIP2B chr12:51065181 5'GT 51065181 Upstream 85bp
chr12 113590684 113590684 1 + T A rs116586136 113590680 + 113590660 113590700 41 GGATCGTTCATCCGCTTTGACAAGTTTTTGCAGGTAGGTGG GGATCGTTCATCCGCTTTGACAAGATTTTGCAGGTAGGTGG < 41bp 0.565960134272962 0.836548406282603 0.19192895 0.15566966 prediction 0.541176544019282 Functional Gain - CFAP73 ENSG00000186710 CDS Human protein_coding chr12:113590680 chr12:113590684 nonsynonymous SNV 0.498 3 25 hm5C_associated_SNPs_104925 0 0 0 0 2 CFAP73 chr12:113590588 3'AG 113590588 Downstream 97bp
chr12 113590684 113590684 1 + T A rs116586136 113590680 + 113590660 113590700 41 GGATCGTTCATCCGCTTTGACAAGTTTTTGCAGGTAGGTGG GGATCGTTCATCCGCTTTGACAAGATTTTGCAGGTAGGTGG < 41bp 0.565960134272962 0.836548406282603 0.19192895 0.15566966 prediction 0.541176544019282 Functional Gain - CFAP73 ENSG00000186710 CDS Human protein_coding chr12:113590680 chr12:113590684 nonsynonymous SNV 0.498 3 25 hm5C_associated_SNPs_104925 0 0 0 0 2 CFAP73 chr12:113590692 5'GT 113590692 Upstream 9bp
chr6 125584048 125584048 1 + C G PRAD 125584047 + 125584027 125584067 41 CCTCAGCTCCACGGCCCATGCCAGTGCCCAGAGCTTGGCAG CCTCAGCTCCACGGCCCATGCGAGTGCCCAGAGCTTGGCAG < 41bp 0.557451304145595 0.828014902211699 0.2984854 0.45824432 prediction 0.541127196132208 Functional Gain - TPD52L1 ENSG00000111907 CDS Human protein_coding chr6:125584047 chr6:125584048 synonymous SNV . 0 22 hm5C_associated_SNPs_104928 0 0 1 0 1 TPD52L1 chr6:125583980 3'AG 125583980 Downstream 69bp
chr12 132635888 132635888 1 + C G rs150774836 132635887 + 132635867 132635907 41 TACCGCGCCCGCTTCTTCCACCTGGCTGACCTCTTCCTGTC TACCGCGCCCGCTTCTTCCACGTGGCTGACCTCTTCCTGTC < 41bp 0.459558193248738 0.770555415076919 0.71087795 0.8934889 prediction 0.541110830153837 Functional Gain - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132635887 chr12:132635888 nonsynonymous SNV 0.340 4 22 hm5C_associated_SNPs_104929 0 0 0 0 2 NOC4L chr12:132635803 3'AG 132635803 Downstream 86bp
chr12 132635888 132635888 1 + C G rs150774836 132635887 + 132635867 132635907 41 TACCGCGCCCGCTTCTTCCACCTGGCTGACCTCTTCCTGTC TACCGCGCCCGCTTCTTCCACGTGGCTGACCTCTTCCTGTC < 41bp 0.459558193248738 0.770555415076919 0.71087795 0.8934889 prediction 0.541110830153837 Functional Gain - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132635887 chr12:132635888 nonsynonymous SNV 0.340 4 22 hm5C_associated_SNPs_104929 0 0 0 0 2 NOC4L chr12:132635913 5'GT 132635913 Upstream 26bp
chr12 113314597 113314597 1 + C G BRCA 113314593 + 113314573 113314613 41 AAGCATCTGCAGCTGCCCCCCAGCCTGCTGCAGCCCGCCAG AAGCATCTGCAGCTGCCCCCCAGCGTGCTGCAGCCCGCCAG < 41bp 0.471548679193498 0.770552852181744 0.15580949 0.32062566 prediction 0.541105704363488 Functional Gain - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113314593 chr12:113314597 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_104930 0 0 0 0 1 RPH3A chr12:113314671 5'GT 113314671 Upstream 75bp
chr16 2548372 2548372 1 + C A UCEC 2548368 + 2548348 2548388 41 CAGCCCCTTCTGCTGTTCTCCTCCCTGCAGCACGGGTACAG CAGCCCCTTCTGCTGTTCTCCTCCATGCAGCACGGGTACAG < 41bp 0.339469417849571 0.770543548999261 0.29606357 0.9370377 prediction 0.541087097998522 Functional Gain - TBC1D24 ENSG00000162065 CDS Human protein_coding chr16:2548368 chr16:2548372 nonsynonymous SNV 0.827 0 25 hm5C_associated_SNPs_104932 0 0 1 1 1 TBC1D24 chr16:2548397 5'GT 2548397 Upstream 26bp
chr15 23811185 23811185 1 + C A STAD 23811181 + 23811161 23811201 41 TCAGGAGGAGGAGCCTGGCCCAGTCCGTTGCCAAGCCGAAG TCAGGAGGAGGAGCCTGGCCCAGTACGTTGCCAAGCCGAAG < 41bp 0.39319340018902 0.770513678942978 0.38022444 0.4467944 prediction 0.541027357885956 Functional Gain - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23811181 chr15:23811185 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_104935 0 0 1 0 1 MKRN3 chr15:23811234 5'GT 23811234 Upstream 50bp
chr15 71211475 71211475 1 + T C BRCA 71211473 + 71211453 71211493 41 TTTTAAGTCATGTTGATAATCTTAATGGGCTGGATTCACTA TTTTAAGTCATGTTGATAATCTCAATGGGCTGGATTCACTA < 41bp 0.476335180994206 0.770484048545854 0.19730294 0.7168179 prediction 0.540968097091709 Functional Gain - LRRC49 ENSG00000137821 CDS Human protein_coding chr15:71211473 chr15:71211475 synonymous SNV . 0 23 hm5C_associated_SNPs_104937 0 0 1 0 2 LRRC49 chr15:71211389 3'AG 71211389 Downstream 87bp
chr15 71211475 71211475 1 + T C BRCA 71211473 + 71211453 71211493 41 TTTTAAGTCATGTTGATAATCTTAATGGGCTGGATTCACTA TTTTAAGTCATGTTGATAATCTCAATGGGCTGGATTCACTA < 41bp 0.476335180994206 0.770484048545854 0.19730294 0.7168179 prediction 0.540968097091709 Functional Gain - LRRC49 ENSG00000137821 CDS Human protein_coding chr15:71211473 chr15:71211475 synonymous SNV . 0 23 hm5C_associated_SNPs_104937 0 0 1 0 2 LRRC49 chr15:71211532 5'GT 71211532 Upstream 58bp
chr17 80012452 80012452 1 + C G CESC 80012451 + 80012431 80012471 41 GCCCCCAGCCCTGGACACGGCCTGGGTGGAGGCCACGCGGA GCCCCCAGCCCTGGACACGGCGTGGGTGGAGGCCACGCGGA < 41bp 0.561299066662145 0.831759576898222 0.35094768 0.70356524 prediction 0.540921020472154 Functional Gain - GPS1 ENSG00000169727 CDS Human protein_coding chr17:80012451 chr17:80012452 synonymous SNV . 0 22 hm5C_associated_SNPs_104941 0 0 1 0 2 GPS1 chr17:80012374 3'AG 80012374 Downstream 79bp
chr17 80012452 80012452 1 + C G CESC 80012451 + 80012431 80012471 41 GCCCCCAGCCCTGGACACGGCCTGGGTGGAGGCCACGCGGA GCCCCCAGCCCTGGACACGGCGTGGGTGGAGGCCACGCGGA < 41bp 0.561299066662145 0.831759576898222 0.35094768 0.70356524 prediction 0.540921020472154 Functional Gain - GPS1 ENSG00000169727 CDS Human protein_coding chr17:80012451 chr17:80012452 synonymous SNV . 0 22 hm5C_associated_SNPs_104941 0 0 1 0 2 GPS1 chr17:80012386 3'AG 80012386 Downstream 67bp
chr16 56623867 56623867 1 + C G THCA 56623866 + 56623846 56623886 41 GAGTGAGTGCGGGGACCCTTCCCCTCTGCCGCCGCCCCCTC GAGTGAGTGCGGGGACCCTTCGCCTCTGCCGCCGCCCCCTC < 41bp 0.56965577412769 0.840099187706777 0.025960237 0.024686247 prediction 0.540886827158173 Functional Gain - MT3 ENSG00000087250 CDS Human protein_coding chr16:56623866 chr16:56623867 synonymous SNV . 0 22 hm5C_associated_SNPs_104944 0 0 0 0 2 MT3 chr16:56623782 3'AG 56623782 Downstream 86bp
chr16 56623867 56623867 1 + C G THCA 56623866 + 56623846 56623886 41 GAGTGAGTGCGGGGACCCTTCCCCTCTGCCGCCGCCCCCTC GAGTGAGTGCGGGGACCCTTCGCCTCTGCCGCCGCCCCCTC < 41bp 0.56965577412769 0.840099187706777 0.025960237 0.024686247 prediction 0.540886827158173 Functional Gain - MT3 ENSG00000087250 CDS Human protein_coding chr16:56623866 chr16:56623867 synonymous SNV . 0 22 hm5C_associated_SNPs_104944 0 0 0 0 2 MT3 chr16:56623847 3'AG 56623847 Downstream 21bp
chr21 47660785 47660785 1 + T A HNSC 47660781 + 47660761 47660801 41 GACAAACACTGCGCCAAGAGCTCCTCAGCAGAAGCTCCTCG GACAAACACTGCGCCAAGAGCTCCACAGCAGAAGCTCCTCG < 41bp 0.416102536724606 0.770436636907208 0.1803599 0.7860724 prediction 0.540873273814416 Functional Gain - MCM3AP ENSG00000160294 CDS Human protein_coding chr21:47660781 chr21:47660785 nonsynonymous SNV 0.119 0 25 hm5C_associated_SNPs_104946 0 0 1 4 1 MCM3AP chr21:47660748 3'AG 47660748 Downstream 38bp
chr5 94927278 94927278 1 + C A UCEC 94927274 + 94927254 94927294 41 ATGGGACCAGGAATTAAAGCCGGCCTACAAGTATCAAATGT ATGGGACCAGGAATTAAAGCCGGCATACAAGTATCAAATGT < 41bp 0.370013404134373 0.770405993936972 0.52800345 0.806224 prediction 0.540811987873945 Functional Gain - ARSK ENSG00000164291 CDS Human protein_coding chr5:94927274 chr5:94927278 nonsynonymous SNV 0.353 1 25 hm5C_associated_SNPs_104950 0 0 0 0 1 ARSK chr5:94927329 5'GT 94927329 Upstream 52bp
chr14 55529352 55529352 1 + C G UCEC 55529348 + 55529328 55529368 41 TGTTCCAGTTGGCAGATGCACTACCTGAACACTCCCCTGCC TGTTCCAGTTGGCAGATGCACTACGTGAACACTCCCCTGCC < 41bp 0.492834716602951 0.770388776683355 0.110839814 0.13953948 prediction 0.54077755336671 Functional Gain - MAPK1IP1L ENSG00000168175 CDS Human protein_coding chr14:55529348 chr14:55529352 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_104954 0 0 1 0 1 MAPK1IP1L chr14:55529336 3'AG 55529336 Downstream 17bp
chr19 35505160 35505160 1 + C G KIRP 35505159 + 35505139 35505179 41 CCTCCAGCCAGACAGTGACCCCGGTGGCTGAACCCCCGAGC CCTCCAGCCAGACAGTGACCCGGGTGGCTGAACCCCCGAGC < 41bp 0.567478539546976 0.837863398554844 0.7484242 0.9320447 prediction 0.540769718015736 Functional Gain - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35505159 chr19:35505160 nonsynonymous SNV 0.830 2 22 hm5C_associated_SNPs_104955 0 0 1 0 1 GRAMD1A chr19:35505093 3'AG 35505093 Downstream 68bp
chr10 96612526 96612526 1 + T A PRAD 96612522 + 96612502 96612542 41 GTGTGGGAGAGGGCCTGGCCCGCATGGAGCTGTTTTTATTC GTGTGGGAGAGGGCCTGGCCCGCAAGGAGCTGTTTTTATTC < 41bp 0.460204586117219 0.770374099175096 0.026401222 0.056516945 prediction 0.540748198350192 Functional Gain - CYP2C19 ENSG00000165841 CDS Human protein_coding chr10:96612522 chr10:96612526 nonsynonymous SNV 0.906 3 25 hm5C_associated_SNPs_104956 0 0 0 0 1 CYP2C19 chr10:96612490 3'AG 96612490 Downstream 37bp
chr16 56660410 56660410 1 + T A rs138690474 56660406 + 56660386 56660426 41 TGCACGTGCGCCGGCTCCTGCAAGTGCAAAGAGTGCAAATG TGCACGTGCGCCGGCTCCTGCAAGAGCAAAGAGTGCAAATG < 41bp 0.548136796841303 0.818506467705786 0.79956675 0.8409518 prediction 0.540739341728967 Functional Gain - MT1E ENSG00000169715 CDS Human protein_coding chr16:56660406 chr16:56660410 nonsynonymous SNV 0.990 3 25 hm5C_associated_SNPs_104957 0 0 0 0 1 MT1E chr16:56660378 3'AG 56660378 Downstream 33bp
chr4 187130359 187130359 1 + C G rs35524919 187130358 + 187130338 187130378 41 CCAGCCTGAGCGGTTCTTCCCCGAGAATGCACAAGGGCGCC CCAGCCTGAGCGGTTCTTCCCGGAGAATGCACAAGGGCGCC < 41bp 0.5733264118488 0.843695201539992 0.55677843 0.93789554 prediction 0.540737579382384 Functional Gain - CYP4V2 ENSG00000145476;ENSG00000164344 CDS Human other chr4:187130358 chr4:187130359 synonymous SNV . 0 22 hm5C_associated_SNPs_104958 2 0 1 0 1 CYP4V2 chr4:187130426 5'GT 187130426 Upstream 68bp
chr3 53892809 53892809 1 + T G PRAD 53892806 + 53892786 53892826 41 GACATAAAGGAACAGTTGTGCTCTGCCCACAAACAGGCGTC GACATAAAGGAACAGTTGTGCTCGGCCCACAAACAGGCGTC < 41bp 0.387044200795776 0.770341562946377 0.1622794 0.5575765 prediction 0.540683125892753 Functional Gain - IL17RB ENSG00000056736 CDS Human protein_coding chr3:53892806 chr3:53892809 nonsynonymous SNV 0.618 4 24 hm5C_associated_SNPs_104964 0 0 0 0 2 IL17RB chr3:53892746 3'AG 53892746 Downstream 64bp
chr3 53892809 53892809 1 + T G PRAD 53892806 + 53892786 53892826 41 GACATAAAGGAACAGTTGTGCTCTGCCCACAAACAGGCGTC GACATAAAGGAACAGTTGTGCTCGGCCCACAAACAGGCGTC < 41bp 0.387044200795776 0.770341562946377 0.1622794 0.5575765 prediction 0.540683125892753 Functional Gain - IL17RB ENSG00000056736 CDS Human protein_coding chr3:53892806 chr3:53892809 nonsynonymous SNV 0.618 4 24 hm5C_associated_SNPs_104964 0 0 0 0 2 IL17RB chr3:53892845 5'GT 53892845 Upstream 37bp
chr7 97362024 97362024 1 + T A LUSC 97362020 + 97362000 97362040 41 GATGATCTGAATTACTGGTCCGACTGGTACGACAGCGACCA GATGATCTGAATTACTGGTCCGACAGGTACGACAGCGACCA < 41bp 0.576672379694704 0.846969006685065 0.037654907 0.2686571 prediction 0.540593253980722 Functional Gain - TAC1 ENSG00000006128 CDS Human protein_coding chr7:97362020 chr7:97362024 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_104968 0 0 0 0 1 TAC1 chr7:97362047 5'GT 97362047 Upstream 24bp
chr3 19479763 19479763 1 + C A STAD 19479759 + 19479739 19479779 41 TATATTGCCGCTCTGTACTTCACGCTGAGCAGCCTCACCAG TATATTGCCGCTCTGTACTTCACGATGAGCAGCCTCACCAG < 41bp 0.596986826212899 0.867273938306328 0.41515824 0.73176944 prediction 0.540574224186858 Functional Gain - KCNH8 ENSG00000183960 CDS Human protein_coding chr3:19479759 chr3:19479763 nonsynonymous SNV 0.984 3 25 hm5C_associated_SNPs_104969 0 0 0 0 1 KCNH8 chr3:19479853 5'GT 19479853 Upstream 91bp
chr17 7188459 7188459 1 + C G rs8192702 7188455 + 7188435 7188475 41 GGACGCTCCATCTCCTGGGCCTGGCGGGCATGTGTGGCTGT GGACGCTCCATCTCCTGGGCCTGGGGGGCATGTGTGGCTGT < 41bp 0.485391141221617 0.77024522438629 0.5064181 0.866521 prediction 0.540490448772581 Functional Gain - SLC2A4 ENSG00000181856 CDS Human protein_coding chr17:7188455 chr17:7188459 nonsynonymous SNV 0.983 1 25 hm5C_associated_SNPs_104970 0 0 1 0 2 SLC2A4 chr17:7188407 3'AG 7188407 Downstream 53bp
chr17 7188459 7188459 1 + C G rs8192702 7188455 + 7188435 7188475 41 GGACGCTCCATCTCCTGGGCCTGGCGGGCATGTGTGGCTGT GGACGCTCCATCTCCTGGGCCTGGGGGGCATGTGTGGCTGT < 41bp 0.485391141221617 0.77024522438629 0.5064181 0.866521 prediction 0.540490448772581 Functional Gain - SLC2A4 ENSG00000181856 CDS Human protein_coding chr17:7188455 chr17:7188459 nonsynonymous SNV 0.983 1 25 hm5C_associated_SNPs_104970 0 0 1 0 2 SLC2A4 chr17:7188508 5'GT 7188508 Upstream 50bp
chr1 28861871 28861871 1 + C G SKCM 28861867 + 28861847 28861887 41 CGTGTGCCTGAGTTATTTGCCAACCGTGGTGGCCGGCAAGG CGTGTGCCTGAGTTATTTGCCAACGGTGGTGGCCGGCAAGG < 41bp 0.520441836962075 0.79067559970055 0.4427111 0.8448862 prediction 0.54046752547695 Functional Gain - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28861867 chr1:28861871 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_104971 0 0 1 0 1 RCC1 chr1:28861892 5'GT 28861892 Upstream 22bp
chr11 123480981 123480981 1 + T C rs10893053 123480979 + 123480959 123480999 41 TCACCCACGACGTGCCCTACCATGACTACTTCTACACAATC TCACCCACGACGTGCCCTACCACGACTACTTCTACACAATC < 41bp 0.5262290757527 0.796431718189187 0.0115175545 0.01343134 prediction 0.540405284872973 Functional Gain - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123480979 chr11:123480981 synonymous SNV . 0 23 hm5C_associated_SNPs_104974 0 0 0 0 2 GRAMD1B chr11:123480904 3'AG 123480904 Downstream 78bp
chr11 123480981 123480981 1 + T C rs10893053 123480979 + 123480959 123480999 41 TCACCCACGACGTGCCCTACCATGACTACTTCTACACAATC TCACCCACGACGTGCCCTACCACGACTACTTCTACACAATC < 41bp 0.5262290757527 0.796431718189187 0.0115175545 0.01343134 prediction 0.540405284872973 Functional Gain - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123480979 chr11:123480981 synonymous SNV . 0 23 hm5C_associated_SNPs_104974 0 0 0 0 2 GRAMD1B chr11:123481046 5'GT 123481046 Upstream 66bp
chr9 98638313 98638313 1 + C G rs78293324 98638312 + 98638292 98638332 41 AGCCGGGCTCGGCCCCTCCCCCTGGCCGGATGGATCCGTCG AGCCGGGCTCGGCCCCTCCCCGTGGCCGGATGGATCCGTCG < 41bp 0.540959855872608 0.811139386868529 0.15570101 0.42189506 prediction 0.540359061991842 Functional Gain - ERCC6L2 ENSG00000182150 CDS Human protein_coding chr9:98638312 chr9:98638313 nonsynonymous SNV 0.016 2 22 hm5C_associated_SNPs_104976 0 0 0 0 1 ERCC6L2 chr9:98638366 5'GT 98638366 Upstream 54bp
chrX 107097870 107097870 1 + T A OV 107097866 + 107097846 107097886 41 TGGAGATGAACCTCACCAACCTGGTTAAGCGCAACAGCGAA TGGAGATGAACCTCACCAACCTGGATAAGCGCAACAGCGAA < 41bp 0.444573639033817 0.77014744927252 0.15460747 0.12346643 prediction 0.54029489854504 Functional Gain - MID2 ENSG00000080561 CDS Human protein_coding chrX:107097866 chrX:107097870 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_104980 0 0 0 0 2 MID2 chrX:107097839 3'AG 107097839 Downstream 32bp
chrX 107097870 107097870 1 + T A OV 107097866 + 107097846 107097886 41 TGGAGATGAACCTCACCAACCTGGTTAAGCGCAACAGCGAA TGGAGATGAACCTCACCAACCTGGATAAGCGCAACAGCGAA < 41bp 0.444573639033817 0.77014744927252 0.15460747 0.12346643 prediction 0.54029489854504 Functional Gain - MID2 ENSG00000080561 CDS Human protein_coding chrX:107097866 chrX:107097870 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_104980 0 0 0 0 2 MID2 chrX:107097934 5'GT 107097934 Upstream 65bp
chr1 36788023 36788023 1 + C A rs200217271 36788019 + 36787999 36788039 41 AGGATCCGTTCGCGCTCCTCCAGCCGCTGCGCCCGCTCCAG AGGATCCGTTCGCGCTCCTCCAGCAGCTGCGCCCGCTCCAG < 41bp 0.63480053205959 0.904935935869202 0.4359545 0.42082474 prediction 0.540270807619224 Functional Gain - EVA1B ENSG00000142694 CDS Human protein_coding chr1:36788019 chr1:36788023 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_104981 0 0 1 0 1 EVA1B chr1:36787968 3'AG 36787968 Downstream 56bp
chr11 57509108 57509108 1 + T G COAD 57509105 + 57509085 57509125 41 GAAGCGTAAGGCTGAGGCCGCGGTGGTCGCCGTAGCCGAGA GAAGCGTAAGGCTGAGGCCGCGGGGGTCGCCGTAGCCGAGA < 41bp 0.629258144565767 0.89938678650529 0.79983413 0.9094503 prediction 0.540257283879046 Functional Gain - SELENOH ENSG00000211450 CDS Human protein_coding chr11:57509105 chr11:57509108 unknown 0.001 0 24 hm5C_associated_SNPs_104983 0 0 1 0 1 SELENOH chr11:57509189 5'GT 57509189 Upstream 82bp
chr8 101237454 101237454 1 + C A OV 101237450 + 101237430 101237470 41 GACCAAATTGGCGGGAGAAGCTGTCACCTATTCCTGCTGTG GACCAAATTGGCGGGAGAAGCTGTAACCTATTCCTGCTGTG < 41bp 0.35407945880507 0.770085239756462 0.3694213 0.60582405 prediction 0.540170479512925 Functional Gain - SPAG1 ENSG00000104450 CDS Human protein_coding chr8:101237450 chr8:101237454 stopgain 0.997 0 25 hm5C_associated_SNPs_104986 0 0 0 0 1 SPAG1 chr8:101237401 3'AG 101237401 Downstream 54bp
chr11 46299687 46299687 1 + C G ESCA 46299686 + 46299666 46299706 41 GACGCCGTCTTGGAACCCTTCCCGGCCGACAGGCTGTTCCC GACGCCGTCTTGGAACCCTTCGCGGCCGACAGGCTGTTCCC < 41bp 0.559420822691839 0.829502396206338 0.73259205 0.8847545 prediction 0.540163147028998 Functional Gain - CREB3L1 ENSG00000157613 CDS Human protein_coding chr11:46299686 chr11:46299687 nonsynonymous SNV 0.996 0 22 hm5C_associated_SNPs_104987 0 0 0 0 1 CREB3L1 chr11:46299764 5'GT 46299764 Upstream 78bp
chr22 37329973 37329973 1 + C A UCEC 37329969 + 37329949 37329989 41 GCCAGGGTGAGGGTCAGGACCTCCCGCACCGGCTACAACGG GCCAGGGTGAGGGTCAGGACCTCCAGCACCGGCTACAACGG < 41bp 0.660026971232677 0.930106577372688 0.08958283 0.9380237 prediction 0.540159212280023 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37329969 chr22:37329973 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_104988 0 0 0 0 2 CSF2RB chr22:37329874 3'AG 37329874 Downstream 100bp
chr22 37329973 37329973 1 + C A UCEC 37329969 + 37329949 37329989 41 GCCAGGGTGAGGGTCAGGACCTCCCGCACCGGCTACAACGG GCCAGGGTGAGGGTCAGGACCTCCAGCACCGGCTACAACGG < 41bp 0.660026971232677 0.930106577372688 0.08958283 0.9380237 prediction 0.540159212280023 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37329969 chr22:37329973 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_104988 0 0 0 0 2 CSF2RB chr22:37330036 5'GT 37330036 Upstream 64bp
chr11 82877716 82877716 1 + T A PRAD 82877712 + 82877692 82877732 41 GTAGAAAACTGGCAAAGTTCCAAGTCTGCCAAAAGATGGAA GTAGAAAACTGGCAAAGTTCCAAGACTGCCAAAAGATGGAA < 41bp 0.454668242571851 0.770037135045862 0.3823567 0.33989936 prediction 0.540074270091724 Functional Gain - PCF11 ENSG00000165494 CDS Human protein_coding chr11:82877712 chr11:82877716 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_104994 0 0 1 0 1 PCF11 chr11:82877756 5'GT 82877756 Upstream 41bp
chr1 1225727 1225727 1 + C A rs578015493 1225723 + 1225703 1225743 41 GCTACTACCTCCACCCTCTGCCGGCGGGGGCTGAGTACTGC GCTACTACCTCCACCCTCTGCCGGAGGGGGCTGAGTACTGC < 41bp 0.377177493965456 0.770035396625045 0.40282178 0.63551307 prediction 0.540070793250091 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1225723 chr1:1225727 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_104995 0 0 0 0 2 SCNN1D chr1:1225651 3'AG 1225651 Downstream 77bp
chr1 1225727 1225727 1 + C A rs578015493 1225723 + 1225703 1225743 41 GCTACTACCTCCACCCTCTGCCGGCGGGGGCTGAGTACTGC GCTACTACCTCCACCCTCTGCCGGAGGGGGCTGAGTACTGC < 41bp 0.377177493965456 0.770035396625045 0.40282178 0.63551307 prediction 0.540070793250091 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1225723 chr1:1225727 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_104995 0 0 0 0 2 SCNN1D chr1:1225768 5'GT 1225768 Upstream 42bp
chr10 103361018 103361018 1 + C G GBM 103361014 + 103360994 103361034 41 TCCAGTGGCGGATTCGAAACCTCCCCTATCCTAAGGATGTC TCCAGTGGCGGATTCGAAACCTCCGCTATCCTAAGGATGTC < 41bp 0.504432169071493 0.774449926533901 0.0488351 0.06353724 prediction 0.540035514924817 Functional Gain - DPCD ENSG00000166171 CDS Human protein_coding chr10:103361014 chr10:103361018 nonsynonymous SNV 0.941 4 25 hm5C_associated_SNPs_104996 0 0 0 0 2 DPCD chr10:103360960 3'AG 103360960 Downstream 59bp
chr10 103361018 103361018 1 + C G GBM 103361014 + 103360994 103361034 41 TCCAGTGGCGGATTCGAAACCTCCCCTATCCTAAGGATGTC TCCAGTGGCGGATTCGAAACCTCCGCTATCCTAAGGATGTC < 41bp 0.504432169071493 0.774449926533901 0.0488351 0.06353724 prediction 0.540035514924817 Functional Gain - DPCD ENSG00000166171 CDS Human protein_coding chr10:103361014 chr10:103361018 nonsynonymous SNV 0.941 4 25 hm5C_associated_SNPs_104996 0 0 0 0 2 DPCD chr10:103361093 5'GT 103361093 Upstream 76bp
chr9 116241803 116241803 1 + C G SKCM 116241802 + 116241782 116241822 41 CTGTCCATTGATGCCCAGGACCGGGTTCTGCTGCTTCACAG CTGTCCATTGATGCCCAGGACGGGGTTCTGCTGCTTCACAG < 41bp 0.48805322315072 0.770010072746976 0.7420807 0.87579715 prediction 0.540020145493952 Functional Gain - RGS3 ENSG00000138835 CDS Human protein_coding chr9:116241802 chr9:116241803 nonsynonymous SNV 0.951 2 22 hm5C_associated_SNPs_104998 0 0 1 0 2 RGS3 chr9:116241771 3'AG 116241771 Downstream 33bp
chr9 116241803 116241803 1 + C G SKCM 116241802 + 116241782 116241822 41 CTGTCCATTGATGCCCAGGACCGGGTTCTGCTGCTTCACAG CTGTCCATTGATGCCCAGGACGGGGTTCTGCTGCTTCACAG < 41bp 0.48805322315072 0.770010072746976 0.7420807 0.87579715 prediction 0.540020145493952 Functional Gain - RGS3 ENSG00000138835 CDS Human protein_coding chr9:116241802 chr9:116241803 nonsynonymous SNV 0.951 2 22 hm5C_associated_SNPs_104998 0 0 1 0 2 RGS3 chr9:116241821 5'GT 116241821 Upstream 19bp
chr6 42848633 42848633 1 + C G BLCA 42848632 + 42848612 42848652 41 CCTTTGGTTCCAGAAAATCTCCTGAAAAAGAGGAAGGCTTA CCTTTGGTTCCAGAAAATCTCGTGAAAAAGAGGAAGGCTTA < 41bp 0.470307502455374 0.769998206689159 0.14393252 0.5875007 prediction 0.539996413378317 Functional Gain - RPL7L1 ENSG00000146223 CDS Human protein_coding chr6:42848632 chr6:42848633 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_105000 0 0 0 0 2 RPL7L1 chr6:42848599 3'AG 42848599 Downstream 35bp
chr6 42848633 42848633 1 + C G BLCA 42848632 + 42848612 42848652 41 CCTTTGGTTCCAGAAAATCTCCTGAAAAAGAGGAAGGCTTA CCTTTGGTTCCAGAAAATCTCGTGAAAAAGAGGAAGGCTTA < 41bp 0.470307502455374 0.769998206689159 0.14393252 0.5875007 prediction 0.539996413378317 Functional Gain - RPL7L1 ENSG00000146223 CDS Human protein_coding chr6:42848632 chr6:42848633 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_105000 0 0 0 0 2 RPL7L1 chr6:42848704 5'GT 42848704 Upstream 72bp
chr15 74893993 74893993 1 + C A rs571268114 74893989 + 74893969 74894009 41 AGGTTGTGGTGAGCCGAGATCACGCCATTGCACTCCAGCCT AGGTTGTGGTGAGCCGAGATCACGACATTGCACTCCAGCCT < 41bp 0.416872861642261 0.769991485387678 0.31858042 0.3453048 prediction 0.539982970775355 Functional Gain - ARID3B;CLK3 ENSG00000179361;ENSG00000179335 intergenic Human other chr15:74893989 chr15:74893993 . . 0 25 hm5C_associated_SNPs_105002 0 0 0 0 1 ARID3B;CLK3 chr15:74893933 3'AG 74893933 Downstream 61bp
chr12 65672558 65672558 1 + C A rs182726780 65672554 + 65672534 65672574 41 CTGCCTGGCCTTTCCATGAGCCCGCGGCGGACCCTCCCGCG CTGCCTGGCCTTTCCATGAGCCCGAGGCGGACCCTCCCGCG < 41bp 0.618646782273235 0.888627813518592 0.34559357 0.44498372 prediction 0.539962062490713 Functional Gain - MSRB3 ENSG00000174099 CDS Human protein_coding chr12:65672554 chr12:65672558 synonymous SNV . 0 25 hm5C_associated_SNPs_105004 1 0 1 0 1 MSRB3 chr12:65672645 5'GT 65672645 Upstream 88bp
chr15 42632043 42632043 1 + T G UCEC 42632040 + 42632020 42632060 41 TCCGAGAAGCCATCAGAGAGCGCTATGGCCTCCTGCCATAT TCCGAGAAGCCATCAGAGAGCGCGATGGCCTCCTGCCATAT < 41bp 0.634724985569851 0.90467172336807 0.14682898 0.44580907 prediction 0.539893475596436 Functional Gain - GANC ENSG00000214013 CDS Human protein_coding chr15:42632040 chr15:42632043 nonsynonymous SNV 0.990 5 24 hm5C_associated_SNPs_105011 0 0 0 0 1 GANC chr15:42632110 5'GT 42632110 Upstream 68bp
chr3 171569799 171569799 1 + T G UCEC 171569796 + 171569776 171569816 41 TCACAACTGGTGTGCTTCTACTGTTGGCTTACAGAGAGTGG TCACAACTGGTGTGCTTCTACTGGTGGCTTACAGAGAGTGG < 41bp 0.386268521995266 0.769941160705867 0.12674388 0.171668 prediction 0.539882321411735 Functional Gain - TMEM212 ENSG00000186329 CDS Human protein_coding chr3:171569796 chr3:171569799 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_105013 0 0 0 0 2 TMEM212 chr3:171569772 3'AG 171569772 Downstream 28bp
chr3 171569799 171569799 1 + T G UCEC 171569796 + 171569776 171569816 41 TCACAACTGGTGTGCTTCTACTGTTGGCTTACAGAGAGTGG TCACAACTGGTGTGCTTCTACTGGTGGCTTACAGAGAGTGG < 41bp 0.386268521995266 0.769941160705867 0.12674388 0.171668 prediction 0.539882321411735 Functional Gain - TMEM212 ENSG00000186329 CDS Human protein_coding chr3:171569796 chr3:171569799 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_105013 0 0 0 0 2 TMEM212 chr3:171569831 5'GT 171569831 Upstream 33bp
chr1 34329957 34329957 1 + T G SKCM 34329955 + 34329935 34329975 41 AATGGAGATCCATCTCAAAGCATGAAAAGGCCAAATATGAA AATGGAGATCCATCTCAAAGCAGGAAAAGGCCAAATATGAA < 41bp 0.58442709752557 0.854367294483359 0.029549032 0.3244407 prediction 0.539880393915578 Functional Gain - HMGB4 ENSG00000176256 CDS Human protein_coding chr1:34329955 chr1:34329957 nonsynonymous SNV 0.993 0 23 hm5C_associated_SNPs_105014 0 0 0 0 1 HMGB4 chr1:34329864 3'AG 34329864 Downstream 94bp
chr17 74722939 74722939 1 + C G rs577498542 74722935 + 74722915 74722955 41 CCCATCACTTCCGGTCGCGCCAGCCGCCCGTTGCCAGTTCT CCCATCACTTCCGGTCGCGCCAGCGGCCCGTTGCCAGTTCT < 41bp 0.500657389037797 0.770574461749113 0.43716282 0.8492118 prediction 0.539834145422634 Functional Gain - METTL23 ENSG00000181038 UTR5 Human protein_coding chr17:74722935 chr17:74722939 . . 0 25 hm5C_associated_SNPs_105017 0 0 1 0 1 METTL23 chr17:74722961 5'GT 74722961 Upstream 23bp
chr16 335373 335373 1 + C G rs2685127 335369 + 335349 335389 41 ACCTGCTGCTGTTTGTCAACCAGACGCTGGCTGCGCACCGG ACCTGCTGCTGTTTGTCAACCAGAGGCTGGCTGCGCACCGG < 41bp 0.546064332238385 0.815977935399766 0.40563047 0.9216564 prediction 0.53982720632276 Functional Gain - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:335369 chr16:335373 nonsynonymous SNV 0.025 1 25 hm5C_associated_SNPs_105018 0 0 0 0 2 PDIA2 chr16:335312 3'AG 335312 Downstream 62bp
chr16 335373 335373 1 + C G rs2685127 335369 + 335349 335389 41 ACCTGCTGCTGTTTGTCAACCAGACGCTGGCTGCGCACCGG ACCTGCTGCTGTTTGTCAACCAGAGGCTGGCTGCGCACCGG < 41bp 0.546064332238385 0.815977935399766 0.40563047 0.9216564 prediction 0.53982720632276 Functional Gain - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:335369 chr16:335373 nonsynonymous SNV 0.025 1 25 hm5C_associated_SNPs_105018 0 0 0 0 2 PDIA2 chr16:335437 5'GT 335437 Upstream 65bp
chr1 10510348 10510348 1 + T G rs556873478 10510346 + 10510326 10510366 41 ACGGCCACCGCTGCCCTGCCCCTGGAGGGTGGCCCCACCGG ACGGCCACCGCTGCCCTGCCCCGGGAGGGTGGCCCCACCGG < 41bp 0.605171477141809 0.875079692902183 0.60380733 0.9198446 prediction 0.539816431520748 Functional Gain - CORT ENSG00000241563 CDS Human protein_coding chr1:10510346 chr1:10510348 nonsynonymous SNV 0.203 2 23 hm5C_associated_SNPs_105019 0 0 0 0 1 CORT chr1:10510379 5'GT 10510379 Upstream 32bp
chr19 11547248 11547248 1 + C G LUSC 11547244 + 11547224 11547264 41 GATGAGTCCAAGCCTTTCACCTGCCTGGACGGTTCGGCCAC GATGAGTCCAAGCCTTTCACCTGCGTGGACGGTTCGGCCAC < 41bp 0.541963702778815 0.811860854374918 0.026226252 0.03182116 prediction 0.539794303192206 Functional Gain - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11547244 chr19:11547248 nonsynonymous SNV 0.492 3 25 hm5C_associated_SNPs_105021 0 0 1 0 2 PRKCSH chr19:11547210 3'AG 11547210 Downstream 39bp
chr19 11547248 11547248 1 + C G LUSC 11547244 + 11547224 11547264 41 GATGAGTCCAAGCCTTTCACCTGCCTGGACGGTTCGGCCAC GATGAGTCCAAGCCTTTCACCTGCGTGGACGGTTCGGCCAC < 41bp 0.541963702778815 0.811860854374918 0.026226252 0.03182116 prediction 0.539794303192206 Functional Gain - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11547244 chr19:11547248 nonsynonymous SNV 0.492 3 25 hm5C_associated_SNPs_105021 0 0 1 0 2 PRKCSH chr19:11547326 5'GT 11547326 Upstream 79bp
chr19 49376525 49376525 1 + C G OV 49376524 + 49376504 49376544 41 AAGCACCCCATCAGGCTACCCCGTGGAGGGATGCCCACCCT AAGCACCCCATCAGGCTACCCGGTGGAGGGATGCCCACCCT < 41bp 0.455311140914629 0.769890784923686 0.24753705 0.852702 prediction 0.539781569847372 Functional Gain - PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49376524 chr19:49376525 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_105022 0 0 1 0 1 PPP1R15A chr19:49376482 3'AG 49376482 Downstream 44bp
chr22 40797677 40797677 1 + C A SKCM 40797673 + 40797653 40797693 41 CAGGAGATCTTGGCCAAGTACACGCAGGTATAGCAGTTAGC CAGGAGATCTTGGCCAAGTACACGAAGGTATAGCAGTTAGC < 41bp 0.362459936152479 0.769863381516605 0.1628057 0.30620342 prediction 0.53972676303321 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40797673 chr22:40797677 nonsynonymous SNV 0.156 2 25 hm5C_associated_SNPs_105024 0 0 0 0 2 SGSM3 chr22:40797597 3'AG 40797597 Downstream 81bp
chr22 40797677 40797677 1 + C A SKCM 40797673 + 40797653 40797693 41 CAGGAGATCTTGGCCAAGTACACGCAGGTATAGCAGTTAGC CAGGAGATCTTGGCCAAGTACACGAAGGTATAGCAGTTAGC < 41bp 0.362459936152479 0.769863381516605 0.1628057 0.30620342 prediction 0.53972676303321 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40797673 chr22:40797677 nonsynonymous SNV 0.156 2 25 hm5C_associated_SNPs_105024 0 0 0 0 2 SGSM3 chr22:40797679 5'GT 40797679 Upstream 3bp
chr5 118691737 118691737 1 + C G rs3797340 118691736 + 118691716 118691756 41 AGAGCGAACTTGCGGCTCGTCCGAGTACATGTGAGCGGTAA AGAGCGAACTTGCGGCTCGTCGGAGTACATGTGAGCGGTAA < 41bp 0.486213491604527 0.769851792795701 0.064445585 0.73731625 prediction 0.539703585591402 Functional Gain - TNFAIP8 ENSG00000145779 UTR5 Human protein_coding chr5:118691736 chr5:118691737 . . 0 22 hm5C_associated_SNPs_105028 0 0 0 0 1 TNFAIP8 chr5:118691816 5'GT 118691816 Upstream 80bp
chr13 114292034 114292034 1 + C A UCEC 114292030 + 114292010 114292050 41 AGGATATCCGGAAGCTTCTACAGCCGTCTGTCCTGTGGAAC AGGATATCCGGAAGCTTCTACAGCAGTCTGTCCTGTGGAAC < 41bp 0.370839846598847 0.76983782517107 0.5277995 0.7400434 prediction 0.539675650342139 Functional Gain - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114292030 chr13:114292034 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_105030 0 0 1 0 1 TFDP1 chr13:114291935 3'AG 114291935 Downstream 100bp
chrX 152914771 152914771 1 + T G ESCA 152914768 + 152914748 152914788 41 TGCCGGCTCCAGCATGGCGCCGGTGCCCGGTCCAGTGCCCG TGCCGGCTCCAGCATGGCGCCGGGGCCCGGTCCAGTGCCCG < 41bp 0.369805796282963 0.769830566503505 0.36554444 0.73374164 prediction 0.53966113300701 Functional Gain - DUSP9 ENSG00000130829 CDS Human protein_coding chrX:152914768 chrX:152914771 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_105031 0 0 1 0 1 DUSP9 chrX:152914687 3'AG 152914687 Downstream 85bp
chr22 25007196 25007196 1 + T G CESC 25007193 + 25007173 25007213 41 CCGTGGCCGCGGATGCCAAGCAGTGCTCGAAGATTGGGAGG CCGTGGCCGCGGATGCCAAGCAGGGCTCGAAGATTGGGAGG < 41bp 0.639623070192371 0.909446438770477 0.71571016 0.91037655 prediction 0.539646737156212 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25007193 chr22:25007196 nonsynonymous SNV 0.588 3 24 hm5C_associated_SNPs_105034 0 0 0 0 1 GGT1 chr22:25007212 5'GT 25007212 Upstream 17bp
chr19 4231316 4231316 1 + T A LUAD 4231312 + 4231292 4231332 41 AGCCCCGTGTCCTTCATTGCCACGTACAGGTCGGAGAGCCT AGCCCCGTGTCCTTCATTGCCACGAACAGGTCGGAGAGCCT < 41bp 0.583935662078811 0.853756363068768 0.8702607 0.36470318 prediction 0.539641401979914 Functional Gain - EBI3 ENSG00000105246 CDS Human protein_coding chr19:4231312 chr19:4231316 nonsynonymous SNV 0.957 3 25 hm5C_associated_SNPs_105035 0 0 0 0 1 EBI3 chr19:4231320 5'GT 4231320 Upstream 5bp
chr19 34949770 34949770 1 + C A SARC 34949766 + 34949746 34949786 41 AATTGTTATGTATGTGCCAGCAAGCCAGAGGTGACTGTGCG AATTGTTATGTATGTGCCAGCAAGACAGAGGTGACTGTGCG < 41bp 0.369328607645372 0.76980856595986 0.18713942 0.20798531 prediction 0.53961713191972 Functional Gain - UBA2 ENSG00000126261 CDS Human protein_coding chr19:34949766 chr19:34949770 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105037 0 0 1 0 2 UBA2 chr19:34949674 3'AG 34949674 Downstream 97bp
chr19 34949770 34949770 1 + C A SARC 34949766 + 34949746 34949786 41 AATTGTTATGTATGTGCCAGCAAGCCAGAGGTGACTGTGCG AATTGTTATGTATGTGCCAGCAAGACAGAGGTGACTGTGCG < 41bp 0.369328607645372 0.76980856595986 0.18713942 0.20798531 prediction 0.53961713191972 Functional Gain - UBA2 ENSG00000126261 CDS Human protein_coding chr19:34949766 chr19:34949770 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105037 0 0 1 0 2 UBA2 chr19:34949829 5'GT 34949829 Upstream 60bp
chr6 41621152 41621152 1 + T A HNSC 41621148 + 41621128 41621168 41 TGCGCCACCTGTGGCTCCTGCAGCTCGGAGGACTCGTGCCT TGCGCCACCTGTGGCTCCTGCAGCACGGAGGACTCGTGCCT < 41bp 0.450437364484575 0.769745132334123 0.29533234 0.30342954 prediction 0.539490264668246 Functional Gain - MDFI ENSG00000112559 CDS Human protein_coding chr6:41621148 chr6:41621152 nonsynonymous SNV 0.977 2 25 hm5C_associated_SNPs_105044 0 0 0 0 1 MDFI chr6:41621057 3'AG 41621057 Downstream 96bp
chr12 6884007 6884007 1 + T G SKCM 6884005 + 6883985 6884025 41 AGAGATGGCTTCAACGTCTCCATCATGTATAACCTCACTGT AGAGATGGCTTCAACGTCTCCAGCATGTATAACCTCACTGT < 41bp 0.433896760142721 0.769719037788486 0.03662771 0.09313336 prediction 0.539438075576971 Functional Gain - LAG3 ENSG00000089692 CDS Human protein_coding chr12:6884005 chr12:6884007 nonsynonymous SNV 0.725 1 23 hm5C_associated_SNPs_105049 0 0 0 0 1 LAG3 chr12:6884030 5'GT 6884030 Upstream 24bp
chr2 169764111 169764111 1 + C G LUSC 169764110 + 169764090 169764130 41 CAGAGGCCTTTGAACACACTCCAGGCATCCAAACGGCCAGT CAGAGGCCTTTGAACACACTCGAGGCATCCAAACGGCCAGT < 41bp 0.458655951308063 0.76968330706089 0.17770803 0.8640076 prediction 0.539366614121781 Functional Gain - G6PC2 ENSG00000152254 CDS Human protein_coding chr2:169764110 chr2:169764111 nonsynonymous SNV 0.995 0 22 hm5C_associated_SNPs_105051 0 0 0 3 1 G6PC2 chr2:169764078 3'AG 169764078 Downstream 34bp
chr15 52005588 52005588 1 + T C LUSC 52005586 + 52005566 52005606 41 ATATTGAATGGTTGAAGAAACATGACAAAAAGGGAAATAAA ATATTGAATGGTTGAAGAAACACGACAAAAAGGGAAATAAA < 41bp 0.499875004540924 0.769678436007205 0.7218915 0.6627698 prediction 0.539356872014409 Functional Gain - SCG3 ENSG00000104112 CDS Human protein_coding chr15:52005586 chr15:52005588 synonymous SNV . 0 23 hm5C_associated_SNPs_105052 0 0 0 0 2 SCG3 chr15:52005530 3'AG 52005530 Downstream 59bp
chr15 52005588 52005588 1 + T C LUSC 52005586 + 52005566 52005606 41 ATATTGAATGGTTGAAGAAACATGACAAAAAGGGAAATAAA ATATTGAATGGTTGAAGAAACACGACAAAAAGGGAAATAAA < 41bp 0.499875004540924 0.769678436007205 0.7218915 0.6627698 prediction 0.539356872014409 Functional Gain - SCG3 ENSG00000104112 CDS Human protein_coding chr15:52005586 chr15:52005588 synonymous SNV . 0 23 hm5C_associated_SNPs_105052 0 0 0 0 2 SCG3 chr15:52005610 5'GT 52005610 Upstream 23bp
chr16 69965751 69965751 1 + T C COAD 69965749 + 69965729 69965769 41 CTGCGCCGCCGGCTCTACATCATCATGCGTGGCGAGGAGGG CTGCGCCGCCGGCTCTACATCACCATGCGTGGCGAGGAGGG < 41bp 0.549606704664153 0.819238729220981 0.065858155 0.08395165 prediction 0.539264049113657 Functional Gain - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69965749 chr16:69965751 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_105056 0 0 1 0 2 WWP2 chr16:69965705 3'AG 69965705 Downstream 47bp
chr16 69965751 69965751 1 + T C COAD 69965749 + 69965729 69965769 41 CTGCGCCGCCGGCTCTACATCATCATGCGTGGCGAGGAGGG CTGCGCCGCCGGCTCTACATCACCATGCGTGGCGAGGAGGG < 41bp 0.549606704664153 0.819238729220981 0.065858155 0.08395165 prediction 0.539264049113657 Functional Gain - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69965749 chr16:69965751 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_105056 0 0 1 0 2 WWP2 chr16:69965793 5'GT 69965793 Upstream 43bp
chr12 69995119 69995119 1 + C A UCEC 69995115 + 69995095 69995135 41 ACCCCTGTTAAGCATTCCCACGTGCTGTCGATCTTTGGACC ACCCCTGTTAAGCATTCCCACGTGATGTCGATCTTTGGACC < 41bp 0.376706681207942 0.769605908822093 0.39126623 0.45579445 prediction 0.539211817644187 Functional Gain - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69995115 chr12:69995119 nonsynonymous SNV 0.126 1 25 hm5C_associated_SNPs_105059 0 0 1 2 1 CCT2 chr12:69995075 3'AG 69995075 Downstream 45bp
chr1 243480092 243480092 1 + T G LGG 243480090 + 243480070 243480110 41 TTGATGTCTGCACTAGTTTCCGTAAGGAGCAGCTTGGCAGA TTGATGTCTGCACTAGTTTCCGGAAGGAGCAGCTTGGCAGA < 41bp 0.444944586381148 0.769571237390094 0.28772318 0.891802 prediction 0.539142474780187 Functional Gain - SDCCAG8 ENSG00000054282 CDS Human protein_coding chr1:243480090 chr1:243480092 nonsynonymous SNV 0.364 2 23 hm5C_associated_SNPs_105068 0 0 1 0 1 SDCCAG8 chr1:243480057 3'AG 243480057 Downstream 36bp
chr1 25627552 25627552 1 + C G rs1053355 25627548 + 25627528 25627568 41 AGGGAACGGAGGATAAAGATCAGACAGCAACGATACCCAGT AGGGAACGGAGGATAAAGATCAGAGAGCAACGATACCCAGT < 41bp 0.469757782123281 0.769544257588288 0.4286152 0.8873707 prediction 0.539088515176577 Functional Gain - RHD ENSG00000187010 CDS Human protein_coding chr1:25627548 chr1:25627552 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_105070 2 0 0 0 1 RHD chr1:25627584 5'GT 25627584 Upstream 33bp
chr3 122128615 122128615 1 + C A UCEC 122128611 + 122128591 122128631 41 CCAAAGACACGAGACTTTAACAAGCTTGAACTTAGAAAAGA CCAAAGACACGAGACTTTAACAAGATTGAACTTAGAAAAGA < 41bp 0.623699149275604 0.893241376645208 0.76284873 0.87505174 prediction 0.539084454739207 Functional Gain - FAM162A ENSG00000114023 CDS Human protein_coding chr3:122128611 chr3:122128615 nonsynonymous SNV 0.834 0 25 hm5C_associated_SNPs_105071 0 0 1 0 1 FAM162A chr3:122128586 3'AG 122128586 Downstream 30bp
chr1 4772050 4772050 1 + C A rs148753165 4772046 + 4772026 4772066 41 TCAGCTCGCCGTGGACCTGCCCGCCTGTGAGGCCCTGGGCC TCAGCTCGCCGTGGACCTGCCCGCATGTGAGGCCCTGGGCC < 41bp 0.3607799950548 0.769530824280072 0.085490674 0.13040033 prediction 0.539061648560144 Functional Gain - AJAP1 ENSG00000196581 CDS Human protein_coding chr1:4772046 chr1:4772050 synonymous SNV . 0 25 hm5C_associated_SNPs_105073 0 0 0 0 1 AJAP1 chr1:4771960 3'AG 4771960 Downstream 91bp
chr2 10008516 10008516 1 + C G DLBC 10008515 + 10008495 10008535 41 GCGGAGTCTCAGTCTGACATCCACACTCGAAAACCTTTCCC GCGGAGTCTCAGTCTGACATCGACACTCGAAAACCTTTCCC < 41bp 0.551383439029361 0.820892496538788 0.047044337 0.09872621 prediction 0.539018115018853 Functional Gain - TAF1B ENSG00000115750 CDS Human protein_coding chr2:10008515 chr2:10008516 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_105075 0 0 1 0 1 TAF1B chr2:10008558 5'GT 10008558 Upstream 43bp
chr4 158256905 158256905 1 + C A KIRC 158256901 + 158256881 158256921 41 ATGAGGGCTACTGTGTTGACCTGGCTGCAGAAATCGCCAAA ATGAGGGCTACTGTGTTGACCTGGATGCAGAAATCGCCAAA < 41bp 0.380177289148431 0.76949410397077 0.35313213 0.45147273 prediction 0.53898820794154 Functional Gain - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158256901 chr4:158256905 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_105077 0 0 0 1 1 GRIA2 chr4:158256823 3'AG 158256823 Downstream 83bp
chr16 1815986 1815986 1 + C G rs200111591 1815985 + 1815965 1816005 41 CAGCGACAGCGACTACCCTCCCGGGGAGATGTTCCTGGACA CAGCGACAGCGACTACCCTCCGGGGGAGATGTTCCTGGACA < 41bp 0.455535500805861 0.769477238445016 0.9223206 0.9363693 prediction 0.538954476890031 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1815985 chr16:1815986 synonymous SNV . 0 22 hm5C_associated_SNPs_105078 0 0 0 0 1 MAPK8IP3 chr16:1815961 3'AG 1815961 Downstream 26bp
chrX 129545445 129545445 1 + C A UCEC 129545441 + 129545421 129545461 41 GGCTGTGGGGCTCGTACCCCCTCACCAAGTTTGTCTGAGAG GGCTGTGGGGCTCGTACCCCCTCAACAAGTTTGTCTGAGAG < 41bp 0.338537272474134 0.769475231243443 0.03999147 0.35688764 prediction 0.538950462486886 Functional Gain - RBMX2 ENSG00000134597 CDS Human protein_coding chrX:129545441 chrX:129545445 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_105079 0 0 0 0 1 RBMX2 chrX:129545499 5'GT 129545499 Upstream 55bp
chr7 158698750 158698750 1 + T C LIHC 158698748 + 158698728 158698768 41 ATTTTGCCTCAGCTTCACACCGTCAAAAGAGTCGGACTCAG ATTTTGCCTCAGCTTCACACCGCCAAAAGAGTCGGACTCAG < 41bp 0.484976992792888 0.769461188566935 0.057481438 0.55957544 prediction 0.538922377133869 Functional Gain - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158698748 chr7:158698750 synonymous SNV . 0 23 hm5C_associated_SNPs_105080 0 0 0 0 2 WDR60 chr7:158698680 3'AG 158698680 Downstream 71bp
chr7 158698750 158698750 1 + T C LIHC 158698748 + 158698728 158698768 41 ATTTTGCCTCAGCTTCACACCGTCAAAAGAGTCGGACTCAG ATTTTGCCTCAGCTTCACACCGCCAAAAGAGTCGGACTCAG < 41bp 0.484976992792888 0.769461188566935 0.057481438 0.55957544 prediction 0.538922377133869 Functional Gain - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158698748 chr7:158698750 synonymous SNV . 0 23 hm5C_associated_SNPs_105080 0 0 0 0 2 WDR60 chr7:158698782 5'GT 158698782 Upstream 33bp
chr15 75045584 75045584 1 + T C LUAD 75045582 + 75045562 75045602 41 CCCAAGAAATGCTGTGTCTTCGTAAACCAGTGGCAGGTCAA CCCAAGAAATGCTGTGTCTTCGCAAACCAGTGGCAGGTCAA < 41bp 0.506428664188127 0.77588574288904 0.09285396 0.119125575 prediction 0.538914157401826 Functional Gain - CYP1A2 ENSG00000140505 CDS Human protein_coding chr15:75045582 chr15:75045584 nonsynonymous SNV 0.664 1 23 hm5C_associated_SNPs_105082 0 0 0 0 2 CYP1A2 chr15:75045525 3'AG 75045525 Downstream 60bp
chr15 75045584 75045584 1 + T C LUAD 75045582 + 75045562 75045602 41 CCCAAGAAATGCTGTGTCTTCGTAAACCAGTGGCAGGTCAA CCCAAGAAATGCTGTGTCTTCGCAAACCAGTGGCAGGTCAA < 41bp 0.506428664188127 0.77588574288904 0.09285396 0.119125575 prediction 0.538914157401826 Functional Gain - CYP1A2 ENSG00000140505 CDS Human protein_coding chr15:75045582 chr15:75045584 nonsynonymous SNV 0.664 1 23 hm5C_associated_SNPs_105082 0 0 0 0 2 CYP1A2 chr15:75045611 5'GT 75045611 Upstream 28bp
chr1 1334993 1334993 1 + C A rs185071634 1334989 + 1334969 1335009 41 GAGCGCCTGCCTGTGCGCCCCGAGCGGGGCTGGGACTCTTC GAGCGCCTGCCTGTGCGCCCCGAGAGGGGCTGGGACTCTTC < 41bp 0.620408114414684 0.889785001738163 0.2534482 0.87293684 prediction 0.538753774646957 Functional Gain - LOC148413 ENSG00000224870 CDS Human processed_transcript chr1:1334989 chr1:1334993 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_105090 0 0 1 0 1 LOC148413 chr1:1335069 5'GT 1335069 Upstream 77bp
chr11 74876920 74876920 1 + T A LUAD 74876916 + 74876896 74876936 41 TGATTGGCTATGGGGCTATCCTTGTGGCCCTGGCGGGCCTG TGATTGGCTATGGGGCTATCCTTGAGGCCCTGGCGGGCCTG < 41bp 0.45311307558982 0.769354927676845 0.19227052 0.46153763 prediction 0.53870985535369 Functional Gain - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74876916 chr11:74876920 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_105094 0 0 0 0 2 SLCO2B1 chr11:74876832 3'AG 74876832 Downstream 89bp
chr11 74876920 74876920 1 + T A LUAD 74876916 + 74876896 74876936 41 TGATTGGCTATGGGGCTATCCTTGTGGCCCTGGCGGGCCTG TGATTGGCTATGGGGCTATCCTTGAGGCCCTGGCGGGCCTG < 41bp 0.45311307558982 0.769354927676845 0.19227052 0.46153763 prediction 0.53870985535369 Functional Gain - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74876916 chr11:74876920 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_105094 0 0 0 0 2 SLCO2B1 chr11:74876994 5'GT 74876994 Upstream 75bp
chr18 61449703 61449703 1 + C A LUAD 61449699 + 61449679 61449719 41 AATGGAAATGTGTTCTTTTCCTCTCTGAGCCTCTTCGCTGC AATGGAAATGTGTTCTTTTCCTCTATGAGCCTCTTCGCTGC < 41bp 0.651252489101144 0.920606726932525 0.26498395 0.94458777 prediction 0.538708475662762 Functional Gain - SERPINB7 ENSG00000166396 CDS Human protein_coding chr18:61449699 chr18:61449703 nonsynonymous SNV 0.975 5 25 hm5C_associated_SNPs_105095 0 0 0 0 1 SERPINB7 chr18:61449774 5'GT 61449774 Upstream 72bp
chr9 116038032 116038032 1 + C A GBM 116038028 + 116038008 116038048 41 GGCTCCAGAGCCCAGCATGGCTTCCTCGCGAGCCTCTTCCA GGCTCCAGAGCCCAGCATGGCTTCATCGCGAGCCTCTTCCA < 41bp 0.371326608324059 0.76934794484021 0.11430004 0.09161252 prediction 0.538695889680419 Functional Gain - PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116038028 chr9:116038032 synonymous SNV . 0 25 hm5C_associated_SNPs_105099 0 0 1 0 1 PRPF4 chr9:116038050 5'GT 116038050 Upstream 19bp
chr3 101311503 101311503 1 + T C UCEC 101311501 + 101311481 101311521 41 ACATCAGCTGGACCAAACTCCTTCAATAAAGGAAAGCATGG ACATCAGCTGGACCAAACTCCTCCAATAAAGGAAAGCATGG < 41bp 0.500651044190775 0.769986741563674 0.28178722 0.96668327 prediction 0.538671394745799 Functional Gain - PCNP ENSG00000081154 CDS Human protein_coding chr3:101311501 chr3:101311503 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_105101 0 0 1 0 1 PCNP chr3:101311471 3'AG 101311471 Downstream 33bp
chr19 11660228 11660228 1 + C G LUSC 11660224 + 11660204 11660244 41 GACCCCAAGCTGGGCACAGACCAGCCTCTGGACCAGGCGAC GACCCCAAGCTGGGCACAGACCAGGCTCTGGACCAGGCGAC < 41bp 0.529904069974867 0.79923025882775 0.35707998 0.6109937 prediction 0.538652377705765 Functional Gain - CNN1 ENSG00000130176 CDS Human protein_coding chr19:11660224 chr19:11660228 nonsynonymous SNV 0.967 2 25 hm5C_associated_SNPs_105102 0 0 0 0 2 CNN1 chr19:11660138 3'AG 11660138 Downstream 91bp
chr19 11660228 11660228 1 + C G LUSC 11660224 + 11660204 11660244 41 GACCCCAAGCTGGGCACAGACCAGCCTCTGGACCAGGCGAC GACCCCAAGCTGGGCACAGACCAGGCTCTGGACCAGGCGAC < 41bp 0.529904069974867 0.79923025882775 0.35707998 0.6109937 prediction 0.538652377705765 Functional Gain - CNN1 ENSG00000130176 CDS Human protein_coding chr19:11660224 chr19:11660228 nonsynonymous SNV 0.967 2 25 hm5C_associated_SNPs_105102 0 0 0 0 2 CNN1 chr19:11660284 5'GT 11660284 Upstream 57bp
chr1 1396160 1396160 1 + C G BLCA 1396159 + 1396139 1396179 41 GATCCTGGCCAGCTGCCACCCCGAGCAGTTCGACTGGGCCA GATCCTGGCCAGCTGCCACCCGGAGCAGTTCGACTGGGCCA < 41bp 0.574942865471074 0.844252755145339 0.35018373 0.90294194 prediction 0.53861977934853 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1396159 chr1:1396160 synonymous SNV . 0 22 hm5C_associated_SNPs_105103 0 0 0 0 1 ATAD3C chr1:1396130 3'AG 1396130 Downstream 31bp
chr5 1217032 1217032 1 + C G LUSC 1217028 + 1217008 1217048 41 CCTACGCGCAGCTGGTGTTCCAGACCTGCGACATCAACGCC CCTACGCGCAGCTGGTGTTCCAGAGCTGCGACATCAACGCC < 41bp 0.470249193762844 0.769286940002704 0.4141894 0.7790834 prediction 0.538573880005408 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1217028 chr5:1217032 nonsynonymous SNV 0.939 0 25 hm5C_associated_SNPs_105105 0 0 0 0 1 SLC6A19 chr5:1217060 5'GT 1217060 Upstream 29bp
chr9 115600856 115600856 1 + T C UCEC 115600854 + 115600834 115600874 41 GAGGGTGAGCTGGCTGAACCCCTGGAGGGTGTGTCAGCTTG GAGGGTGAGCTGGCTGAACCCCCGGAGGGTGTGTCAGCTTG < 41bp 0.518295181354514 0.787523830174332 0.29890355 0.34615773 prediction 0.538457297639637 Functional Gain - SNX30 ENSG00000148158 CDS Human protein_coding chr9:115600854 chr9:115600856 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_105112 0 0 1 0 1 SNX30 chr9:115600778 3'AG 115600778 Downstream 79bp
chr8 145101585 145101585 1 + C A rs201925917 145101581 + 145101561 145101601 41 GAGAAGCTGTGCCAGAGGCTCACACAGCGCTATGTGAGCGT GAGAAGCTGTGCCAGAGGCTCACAAAGCGCTATGTGAGCGT < 41bp 0.36249355258506 0.769211143806833 0.028908253 0.071837455 prediction 0.538422287613666 Functional Gain - SPATC1 ENSG00000186583 CDS Human protein_coding chr8:145101581 chr8:145101585 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_105113 0 0 0 1 1 SPATC1 chr8:145101528 3'AG 145101528 Downstream 58bp
chr3 31674465 31674465 1 + T C HNSC 31674463 + 31674443 31674483 41 CCCCAGGTTTTGACCGAACACGTAATGCTGAGATTGGAAAT CCCCAGGTTTTGACCGAACACGCAATGCTGAGATTGGAAAT < 41bp 0.53297730191378 0.802163244172993 0.16600141 0.13011256 prediction 0.538371884518426 Functional Gain - STT3B ENSG00000163527 CDS Human protein_coding chr3:31674463 chr3:31674465 synonymous SNV . 0 23 hm5C_associated_SNPs_105117 0 0 1 0 1 STT3B chr3:31674427 3'AG 31674427 Downstream 39bp
chr21 44153531 44153531 1 + T G UCEC 44153529 + 44153509 44153549 41 TTGGCTGTCCTAGAGAAACGCGTGGAATGTGAGTGACGTTT TTGGCTGTCCTAGAGAAACGCGGGGAATGTGAGTGACGTTT < 41bp 0.485826250785158 0.769162164305123 0.35569406 0.891266 prediction 0.538324328610245 Functional Gain - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44153529 chr21:44153531 nonsynonymous SNV 0.896 3 23 hm5C_associated_SNPs_105119 0 0 0 0 2 PDE9A chr21:44153466 3'AG 44153466 Downstream 66bp
chr21 44153531 44153531 1 + T G UCEC 44153529 + 44153509 44153549 41 TTGGCTGTCCTAGAGAAACGCGTGGAATGTGAGTGACGTTT TTGGCTGTCCTAGAGAAACGCGGGGAATGTGAGTGACGTTT < 41bp 0.485826250785158 0.769162164305123 0.35569406 0.891266 prediction 0.538324328610245 Functional Gain - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44153529 chr21:44153531 nonsynonymous SNV 0.896 3 23 hm5C_associated_SNPs_105119 0 0 0 0 2 PDE9A chr21:44153536 5'GT 44153536 Upstream 6bp
chr16 20838467 20838467 1 + T C rs141772223 20838465 + 20838445 20838485 41 AGTTAAAAGCACTGCTTCCTCCTGATGCTGTGTTAGTGGGC AGTTAAAAGCACTGCTTCCTCCCGATGCTGTGTTAGTGGGC < 41bp 0.518512077724496 0.787645496198339 0.11234513 0.093972534 prediction 0.538266836947688 Functional Gain - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20838465 chr16:20838467 synonymous SNV . 0 23 hm5C_associated_SNPs_105121 0 0 1 0 2 REXO5 chr16:20838380 3'AG 20838380 Downstream 88bp
chr16 20838467 20838467 1 + T C rs141772223 20838465 + 20838445 20838485 41 AGTTAAAAGCACTGCTTCCTCCTGATGCTGTGTTAGTGGGC AGTTAAAAGCACTGCTTCCTCCCGATGCTGTGTTAGTGGGC < 41bp 0.518512077724496 0.787645496198339 0.11234513 0.093972534 prediction 0.538266836947688 Functional Gain - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20838465 chr16:20838467 synonymous SNV . 0 23 hm5C_associated_SNPs_105121 0 0 1 0 2 REXO5 chr16:20838518 5'GT 20838518 Upstream 52bp
chr15 89386836 89386836 1 + C G LUSC 89386832 + 89386812 89386852 41 CTACGTGCATGCCAACCAGACGGGCTACCCCGACCCCTCAT CTACGTGCATGCCAACCAGACGGGGTACCCCGACCCCTCAT < 41bp 0.539784457780367 0.808909640938326 0.8726312 0.92077637 prediction 0.538250366315918 Functional Gain - ACAN ENSG00000157766 CDS Human protein_coding chr15:89386832 chr15:89386836 synonymous SNV . 0 25 hm5C_associated_SNPs_105122 0 0 0 0 1 ACAN chr15:89386879 5'GT 89386879 Upstream 44bp
chr11 1000480 1000480 1 + C A rs111435435 1000476 + 1000456 1000496 41 CTGCTGGGTCTCGGGGCTGCCCCCCCTGCCCCCGCGGGCCC CTGCTGGGTCTCGGGGCTGCCCCCACTGCCCCCGCGGGCCC < 41bp 0.362815060588716 0.769123287073104 0.2784389 0.61680984 prediction 0.538246574146207 Functional Gain - AP2A2 ENSG00000183020 CDS Human protein_coding chr11:1000476 chr11:1000480 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_105124 0 0 0 0 1 AP2A2 chr11:1000432 3'AG 1000432 Downstream 49bp
chr21 42694953 42694953 1 + C A rs149569625 42694949 + 42694929 42694969 41 AGATGCACCCCTGTCCAGTGCTGCCTATAGCATCCGCAGCA AGATGCACCCCTGTCCAGTGCTGCATATAGCATCCGCAGCA < 41bp 0.361099551924526 0.769100839092676 0.11980766 0.08392027 prediction 0.538201678185352 Functional Gain - FAM3B ENSG00000183844 CDS Human protein_coding chr21:42694949 chr21:42694953 synonymous SNV . 0 25 hm5C_associated_SNPs_105131 0 0 1 0 1 FAM3B chr21:42694993 5'GT 42694993 Upstream 41bp
chr10 5248320 5248320 1 + T C OV 5248318 + 5248298 5248338 41 TGCAGGCAGCTGGAGATGATCCTCAACAAGCCAGGACTCAA TGCAGGCAGCTGGAGATGATCCCCAACAAGCCAGGACTCAA < 41bp 0.48623379361045 0.769077828490374 0.027688622 0.030404747 prediction 0.538155656980748 Functional Gain - AKR1C4 ENSG00000198610 CDS Human protein_coding chr10:5248318 chr10:5248320 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_105134 0 0 0 0 2 AKR1C4 chr10:5248238 3'AG 5248238 Downstream 83bp
chr10 5248320 5248320 1 + T C OV 5248318 + 5248298 5248338 41 TGCAGGCAGCTGGAGATGATCCTCAACAAGCCAGGACTCAA TGCAGGCAGCTGGAGATGATCCCCAACAAGCCAGGACTCAA < 41bp 0.48623379361045 0.769077828490374 0.027688622 0.030404747 prediction 0.538155656980748 Functional Gain - AKR1C4 ENSG00000198610 CDS Human protein_coding chr10:5248318 chr10:5248320 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_105134 0 0 0 0 2 AKR1C4 chr10:5248360 5'GT 5248360 Upstream 41bp
chr17 78075384 78075384 1 + C G rs144639114 78075383 + 78075363 78075403 41 CTGCGCGCCCCCGGGCACGACCCCGGAGTCTCCGCGGGCGG CTGCGCGCCCCCGGGCACGACGCCGGAGTCTCCGCGGGCGG < 41bp 0.531820175243245 0.800859090541922 0.46434447 0.52669376 prediction 0.538077830597355 Functional Gain - GAA ENSG00000171298 UTR5 Human protein_coding chr17:78075383 chr17:78075384 . . 0 22 hm5C_associated_SNPs_105138 2 0 1 0 1 GAA chr17:78075424 5'GT 78075424 Upstream 41bp
chr7 141833944 141833944 1 + C G LUAD 141833943 + 141833923 141833963 41 ATCTTCACCCGGGACGCTACCCCCACCGAGGTGAGGTGGCT ATCTTCACCCGGGACGCTACCGCCACCGAGGTGAGGTGGCT < 41bp 0.565448351137145 0.834472597222121 0.0723764 0.59695446 prediction 0.538048492169953 Functional Gain - MGAM2 ENSG00000257743 CDS Human protein_coding chr7:141833943 chr7:141833944 nonsynonymous SNV 0.083 3 22 hm5C_associated_SNPs_105141 0 0 0 0 1 MGAM2 chr7:141833952 5'GT 141833952 Upstream 9bp
chr10 70661146 70661146 1 + T G UCEC 70661144 + 70661124 70661164 41 GGCGGCGGTGGCCAGTAATGCCTGGGAAACTCCTCTGGGGG GGCGGCGGTGGCCAGTAATGCCGGGGAAACTCCTCTGGGGG < 41bp 0.609224816754403 0.878242550447576 0.8563515 0.9373131 prediction 0.538035467386347 Functional Gain - DDX50 ENSG00000107625 CDS Human protein_coding chr10:70661144 chr10:70661146 synonymous SNV . 0 23 hm5C_associated_SNPs_105142 0 0 1 0 1 DDX50 chr10:70661227 5'GT 70661227 Upstream 82bp
chr1 159931161 159931161 1 + C A rs113012919 159931157 + 159931137 159931177 41 GATCTGGAAAGCTGGGGACCCACACGGCAGAGCCATGGTAC GATCTGGAAAGCTGGGGACCCACAAGGCAGAGCCATGGTAC < 41bp 0.609182401963028 0.878186677257028 0.06239733 0.4244249 prediction 0.538008550588 Functional Gain - LINC01133 ENSG00000224259 ncRNA_exonic Human lincRNA chr1:159931157 chr1:159931161 . . 0 25 hm5C_associated_SNPs_105144 0 0 0 0 1 LINC01133 chr1:159931195 5'GT 159931195 Upstream 35bp
chr10 94109483 94109483 1 + T G KIRC 94109481 + 94109461 94109501 41 AGGCCAATCCTTTAGCAGATCATGTCTCTGCTACTCGAATC AGGCCAATCCTTTAGCAGATCAGGTCTCTGCTACTCGAATC < 41bp 0.430609357426901 0.769000116561175 0.081358254 0.25702757 prediction 0.53800023312235 Functional Gain - MARCH5 ENSG00000198060 CDS Human protein_coding chr10:94109481 chr10:94109483 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_105145 0 0 1 0 1 MARCH5 chr10:94109428 3'AG 94109428 Downstream 56bp
chrX 46332193 46332193 1 + C A BLCA 46332189 + 46332169 46332209 41 ATTCATTTTCTTCTAGAAGTCTGGCAAGTTGATGAGCAGAT ATTCATTTTCTTCTAGAAGTCTGGAAAGTTGATGAGCAGAT < 41bp 0.384586059419255 0.768988826795878 0.055107117 0.07869187 prediction 0.537977653591756 Functional Gain - KRBOX4 ENSG00000147121 CDS Human protein_coding chrX:46332189 chrX:46332193 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_105147 0 0 1 0 1 KRBOX4 chrX:46332185 3'AG 46332185 Downstream 9bp
chr3 119452224 119452224 1 + T C LIHC 119452222 + 119452202 119452242 41 TTCCCATAGGATTAGTGGAACTTGAGTCATGTCTCCCAGAT TTCCCATAGGATTAGTGGAACTCGAGTCATGTCTCCCAGAT < 41bp 0.488831113965651 0.768974923353589 0.0955295 0.17721015 prediction 0.537949846707178 Functional Gain - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119452222 chr3:119452224 synonymous SNV . 0 23 hm5C_associated_SNPs_105152 0 0 0 0 1 MAATS1 chr3:119452211 3'AG 119452211 Downstream 14bp
chr3 49209057 49209057 1 + T A rs34571182 49209053 + 49209033 49209073 41 AGCCCGACTTCAGCCCCAGCCAGATCCCGCGTCAACGGAGG AGCCCGACTTCAGCCCCAGCCAGAACCCGCGTCAACGGAGG < 41bp 0.493474843080566 0.768938459961679 0.28619426 0.26152492 prediction 0.537876919923357 Functional Gain - KLHDC8B ENSG00000185909 UTR5 Human protein_coding chr3:49209053 chr3:49209057 . . 0 25 hm5C_associated_SNPs_105153 0 0 1 0 1 KLHDC8B chr3:49209118 5'GT 49209118 Upstream 62bp
chr4 187088243 187088243 1 + C A LUSC 187088239 + 187088219 187088259 41 TGTCAAGGCCCAGCACAACCCACACGTTCCGGGTGGGTTCT TGTCAAGGCCCAGCACAACCCACAAGTTCCGGGTGGGTTCT < 41bp 0.343923581898359 0.768934862705458 0.15391266 0.21250051 prediction 0.537869725410916 Functional Gain - FAM149A ENSG00000109794 CDS Human protein_coding chr4:187088239 chr4:187088243 nonsynonymous SNV 0.000 3 25 hm5C_associated_SNPs_105154 0 0 0 0 1 FAM149A chr4:187088250 5'GT 187088250 Upstream 8bp
chr2 228197226 228197226 1 + T A LUSC 228197222 + 228197202 228197242 41 ACCCCTGGCACTGAAAACACCACCTCGTGTACTTACGCTGA ACCCCTGGCACTGAAAACACCACCACGTGTACTTACGCTGA < 41bp 0.441529007294809 0.768898492748136 0.070438385 0.08438897 prediction 0.537796985496271 Functional Gain - MFF ENSG00000168958 CDS Human protein_coding chr2:228197222 chr2:228197226 synonymous SNV . 0 25 hm5C_associated_SNPs_105160 0 0 1 0 2 MFF chr2:228197135 3'AG 228197135 Downstream 92bp
chr2 228197226 228197226 1 + T A LUSC 228197222 + 228197202 228197242 41 ACCCCTGGCACTGAAAACACCACCTCGTGTACTTACGCTGA ACCCCTGGCACTGAAAACACCACCACGTGTACTTACGCTGA < 41bp 0.441529007294809 0.768898492748136 0.070438385 0.08438897 prediction 0.537796985496271 Functional Gain - MFF ENSG00000168958 CDS Human protein_coding chr2:228197222 chr2:228197226 synonymous SNV . 0 25 hm5C_associated_SNPs_105160 0 0 1 0 2 MFF chr2:228197304 5'GT 228197304 Upstream 79bp
chr18 29784155 29784155 1 + T C ESCA 29784153 + 29784133 29784173 41 CTCTCCTGTAAGCTGCTGGTCTTCAGTAGGAAATAGGCGGG CTCTCCTGTAAGCTGCTGGTCTCCAGTAGGAAATAGGCGGG < 41bp 0.481290298807332 0.768889549323357 0.06935206 0.926419 prediction 0.537779098646713 Functional Gain - MEP1B ENSG00000141434 CDS Human protein_coding chr18:29784153 chr18:29784155 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_105162 0 0 0 0 1 MEP1B chr18:29784145 3'AG 29784145 Downstream 11bp
chr4 186997801 186997801 1 + T A SARC 186997797 + 186997777 186997817 41 AGACAGACTTTGCCTTGTATCTACTTTTGGGGGGGCCTTTT AGACAGACTTTGCCTTGTATCTACATTTGGGGGGGCCTTTT < 41bp 0.468149582648328 0.768864951919545 0.050719142 0.8463985 prediction 0.53772990383909 Functional Gain - TLR3 ENSG00000164342 CDS Human protein_coding chr4:186997797 chr4:186997801 nonsynonymous SNV 0.067 0 25 hm5C_associated_SNPs_105164 0 0 0 0 1 TLR3 chr4:186997767 3'AG 186997767 Downstream 35bp
chr2 27435287 27435287 1 + C A SARC 27435283 + 27435263 27435303 41 TACGACCCTGGTGCCCTGGGCTGCCGCCCTGCTCCTCGCTC TACGACCCTGGTGCCCTGGGCTGCAGCCCTGCTCCTCGCTC < 41bp 0.392434628672772 0.768849247263793 0.17911807 0.25574026 prediction 0.537698494527586 Functional Gain - ATRAID ENSG00000138085 CDS Human protein_coding chr2:27435283 chr2:27435287 synonymous SNV . 0 25 hm5C_associated_SNPs_105167 0 0 1 0 1 ATRAID chr2:27435335 5'GT 27435335 Upstream 49bp
chr16 55719131 55719131 1 + C A LUAD 55719127 + 55719107 55719147 41 CCCCAGTGGCAGCTCTTGCTCTGTCTGATGGTCGTCGTCAT CCCCAGTGGCAGCTCTTGCTCTGTATGATGGTCGTCGTCAT < 41bp 0.348353390732666 0.768830208566075 0.08591583 0.046666026 prediction 0.537660417132151 Functional Gain - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55719127 chr16:55719131 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_105171 0 0 0 0 1 SLC6A2 chr16:55719193 5'GT 55719193 Upstream 63bp
chr3 53195400 53195400 1 + C A rs550252787 53195396 + 53195376 53195416 41 GCGCGCGCCGGGGAGCGGCGCCCCCGCCGCTGCCGCCGCGA GCGCGCGCCGGGGAGCGGCGCCCCAGCCGCTGCCGCCGCGA < 41bp 0.44781854661659 0.768825248617397 0.47885367 0.4051087 prediction 0.537650497234795 Functional Gain - PRKCD ENSG00000163932 UTR5 Human protein_coding chr3:53195396 chr3:53195400 . . 0 25 hm5C_associated_SNPs_105172 0 0 1 0 1 PRKCD chr3:53195444 5'GT 53195444 Upstream 45bp
chr4 647648 647648 1 + T A LUAD 647644 + 647624 647664 41 TGTGCCCCTCCCTCCAGGTGCTGCTGTGGTCGGCCAACAAG TGTGCCCCTCCCTCCAGGTGCTGCAGTGGTCGGCCAACAAG < 41bp 0.435185992301756 0.768820205871357 0.19184572 0.3055908 prediction 0.537640411742715 Functional Gain - PDE6B ENSG00000133256 CDS Human protein_coding chr4:647644 chr4:647648 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_105173 0 0 0 0 1 PDE6B chr4:647641 3'AG 647641 Downstream 8bp
chr3 134967263 134967263 1 + C A rs56317545 134967259 + 134967239 134967279 41 TGTTGGCAGAAGGACCGGAACAGCCGGCCCCGGTTTGCGGA TGTTGGCAGAAGGACCGGAACAGCAGGCCCCGGTTTGCGGA < 41bp 0.363612459932143 0.7688186018031 0.116941124 0.1350343 prediction 0.5376372036062 Functional Gain - EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134967259 chr3:134967263 synonymous SNV . 0 25 hm5C_associated_SNPs_105174 0 0 0 0 1 EPHB1 chr3:134967351 5'GT 134967351 Upstream 89bp
chr12 1940175 1940175 1 + C G UCEC 1940174 + 1940154 1940194 41 TTCTCCTGCAAGTGTGACAGCCGCAGCCTGGAGGTGGACTG TTCTCCTGCAAGTGTGACAGCGGCAGCCTGGAGGTGGACTG < 41bp 0.562554087365754 0.831302046320676 0.77791876 0.9069018 prediction 0.537495917909845 Functional Gain - LRTM2 ENSG00000166159 CDS Human protein_coding chr12:1940174 chr12:1940175 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_105179 0 0 0 0 1 LRTM2 chr12:1940101 3'AG 1940101 Downstream 75bp
chr19 34895654 34895654 1 + C G LUSC 34895653 + 34895633 34895673 41 ATTGCCCGCTGGAAGGCTCCCCGTTTCACCGTCTGCTGCAC ATTGCCCGCTGGAAGGCTCCCGGTTTCACCGTCTGCTGCAC < 41bp 0.463199124739264 0.768746089088652 0.32351926 0.81192327 prediction 0.537492178177305 Functional Gain - PDCD2L ENSG00000126249;ENSG00000266953 CDS Human other chr19:34895653 chr19:34895654 nonsynonymous SNV 0.462 3 22 hm5C_associated_SNPs_105180 0 0 1 0 1 PDCD2L chr19:34895720 5'GT 34895720 Upstream 67bp
chr1 2235451 2235451 1 + C A UCEC 2235447 + 2235427 2235467 41 AAGCGGAAGCTGACTGTGGACACCCCAGGAGCCCCAGAGAC AAGCGGAAGCTGACTGTGGACACCACAGGAGCCCCAGAGAC < 41bp 0.349218670431654 0.768718241462379 0.10990247 0.28820166 prediction 0.537436482924758 Functional Gain - SKI ENSG00000157933 CDS Human protein_coding chr1:2235447 chr1:2235451 nonsynonymous SNV 0.008 1 25 hm5C_associated_SNPs_105185 0 0 1 0 1 SKI chr1:2235541 5'GT 2235541 Upstream 91bp
chr4 1808592 1808592 1 + C G rs145020302 1808588 + 1808568 1808608 41 GCGGGAGTGCTGGCATGCCGCGCCCTCCCAGAGGCCCACCT GCGGGAGTGCTGGCATGCCGCGCCGTCCCAGAGGCCCACCT < 41bp 0.487793857597876 0.768641041138008 0.029661804 0.05142954 prediction 0.537282082276016 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1808588 chr4:1808592 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_105190 1 0 1 0 2 FGFR3 chr4:1808556 3'AG 1808556 Downstream 37bp
chr4 1808592 1808592 1 + C G rs145020302 1808588 + 1808568 1808608 41 GCGGGAGTGCTGGCATGCCGCGCCCTCCCAGAGGCCCACCT GCGGGAGTGCTGGCATGCCGCGCCGTCCCAGAGGCCCACCT < 41bp 0.487793857597876 0.768641041138008 0.029661804 0.05142954 prediction 0.537282082276016 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1808588 chr4:1808592 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_105190 1 0 1 0 2 FGFR3 chr4:1808661 5'GT 1808661 Upstream 70bp
chr1 155289624 155289624 1 - G C LUAD 155289625 - 155289605 155289645 41 GGATGTCAGTGCCAATTTTGCCGGTCACACTGGGGTCCCCA GGATGTCAGTGCCAATTTTGCGGGTCACACTGGGGTCCCCA < 41bp 0.46364169310106 0.768608895818788 0.40780464 0.9159026 prediction 0.537217791637576 Functional Gain - FDPS ENSG00000160752 CDS Human protein_coding chr1:155289625 chr1:155289624 nonsynonymous SNV 0.966 4 22 hm5C_associated_SNPs_105194 0 0 0 0 1 FDPS chr1:155289594 5'GT 155289594 Upstream 31bp
chr3 39433016 39433016 1 + C G CESC 39433015 + 39432995 39433035 41 TATTTCTTGCGAGGCCATCCCCCAACCGCCCTGGAGTCAGT TATTTCTTGCGAGGCCATCCCGCAACCGCCCTGGAGTCAGT < 41bp 0.568265935957939 0.836844835617815 0.1273242 0.30322608 prediction 0.537157799319752 Functional Gain - SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39433015 chr3:39433016 nonsynonymous SNV 0.976 1 22 hm5C_associated_SNPs_105197 0 0 0 0 2 SLC25A38 chr3:39432932 3'AG 39432932 Downstream 85bp
chr3 39433016 39433016 1 + C G CESC 39433015 + 39432995 39433035 41 TATTTCTTGCGAGGCCATCCCCCAACCGCCCTGGAGTCAGT TATTTCTTGCGAGGCCATCCCGCAACCGCCCTGGAGTCAGT < 41bp 0.568265935957939 0.836844835617815 0.1273242 0.30322608 prediction 0.537157799319752 Functional Gain - SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39433015 chr3:39433016 nonsynonymous SNV 0.976 1 22 hm5C_associated_SNPs_105197 0 0 0 0 2 SLC25A38 chr3:39433111 5'GT 39433111 Upstream 96bp
chr6 42890948 42890948 1 + C A LUAD 42890944 + 42890924 42890964 41 CCTTCACCTATGGCCCTTCCCCAGCAACGGATGGCACCTGG CCTTCACCTATGGCCCTTCCCCAGAAACGGATGGCACCTGG < 41bp 0.366842848481459 0.768572793636026 0.12191248 0.2170817 prediction 0.537145587272052 Functional Gain - PTCRA ENSG00000171611 CDS Human protein_coding chr6:42890944 chr6:42890948 nonsynonymous SNV 0.017 0 25 hm5C_associated_SNPs_105198 0 0 0 0 1 PTCRA chr6:42890883 3'AG 42890883 Downstream 66bp
chr19 45561110 45561110 1 + C G rs77436067 45561109 + 45561089 45561129 41 AGAGGAGGAGGAGTCAGCGGCCGAGGAGGAGAGCAACTCGG AGAGGAGGAGGAGTCAGCGGCGGAGGAGGAGAGCAACTCGG < 41bp 0.456945833522108 0.768489858171496 0.84043 0.9038627 prediction 0.536979716342992 Functional Gain - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45561109 chr19:45561110 synonymous SNV . 0 22 hm5C_associated_SNPs_105204 0 0 1 0 2 CLASRP chr19:45561140 5'GT 45561140 Upstream 31bp
chr19 45561110 45561110 1 + C G rs77436067 45561109 + 45561089 45561129 41 AGAGGAGGAGGAGTCAGCGGCCGAGGAGGAGAGCAACTCGG AGAGGAGGAGGAGTCAGCGGCGGAGGAGGAGAGCAACTCGG < 41bp 0.456945833522108 0.768489858171496 0.84043 0.9038627 prediction 0.536979716342992 Functional Gain - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45561109 chr19:45561110 synonymous SNV . 0 22 hm5C_associated_SNPs_105204 0 0 1 0 2 CLASRP chr19:45561156 5'GT 45561156 Upstream 47bp
chr17 76167915 76167915 1 + C A UCEC 76167911 + 76167891 76167931 41 CCCCACTCCGGACCCCAACACTGCCTACGCCTCCTACCCAG CCCCACTCCGGACCCCAACACTGCATACGCCTCCTACCCAG < 41bp 0.648742283066347 0.91721390491832 0.14096212 0.58590156 prediction 0.536943243703946 Functional Gain - SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167911 chr17:76167915 nonsynonymous SNV 0.416 0 25 hm5C_associated_SNPs_105209 0 0 1 4 1 SYNGR2 chr17:76167820 3'AG 76167820 Downstream 96bp
chr6 26465629 26465629 1 + T A GBM 26465625 + 26465605 26465645 41 TGCAAAAAGAGGAAGAACTTCAAGTAAAAGGTAAAAGAGGC TGCAAAAAGAGGAAGAACTTCAAGAAAAAGGTAAAAGAGGC < 41bp 0.459622139659941 0.768420857124079 0.25570643 0.26484805 prediction 0.536841714248158 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26465625 chr6:26465629 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_105214 0 0 1 0 1 BTN2A1 chr6:26465634 5'GT 26465634 Upstream 6bp
chr19 41903766 41903766 1 + C A rs34541442 41903762 + 41903742 41903782 41 GCGATCGCTGCAGCGAGGGTCTGGCGGCTAAACCGTGGTTT GCGATCGCTGCAGCGAGGGTCTGGAGGCTAAACCGTGGTTT < 41bp 0.397697455199699 0.768408602710124 0.88226104 0.8864641 prediction 0.536817205420248 Functional Gain - BCKDHA ENSG00000248098 CDS Human protein_coding chr19:41903762 chr19:41903766 synonymous SNV . 0 25 hm5C_associated_SNPs_105216 1 0 1 0 1 BCKDHA chr19:41903840 5'GT 41903840 Upstream 75bp
chr20 62612640 62612640 1 + C G rs186249212 62612636 + 62612616 62612656 41 ACCGTTCCTAGGGATGCCCGCGCCCCTCGGCTACGTGCCGG ACCGTTCCTAGGGATGCCCGCGCCGCTCGGCTACGTGCCGG < 41bp 0.512370965756837 0.780776142457837 0.10243875 0.10061234 prediction 0.536810353402001 Functional Gain - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62612636 chr20:62612640 synonymous SNV . 0 25 hm5C_associated_SNPs_105217 0 0 1 0 1 PRPF6 chr20:62612669 5'GT 62612669 Upstream 30bp
chr17 2278872 2278872 1 + C G rs61739394 2278871 + 2278851 2278891 41 ACCTGAGCAGGAAGCAGGACCCGGGACTCCGGGCACCGCCG ACCTGAGCAGGAAGCAGGACCGGGGACTCCGGGCACCGCCG < 41bp 0.560235230860341 0.828629611356783 0.8891102 0.90489054 prediction 0.536788760992883 Functional Gain - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2278871 chr17:2278872 synonymous SNV . 0 22 hm5C_associated_SNPs_105218 0 0 1 0 1 SGSM2 chr17:2278786 3'AG 2278786 Downstream 87bp
chr12 52695760 52695760 1 + C G rs201694571 52695759 + 52695739 52695779 41 CTGCATCTCGGCCTGCGGGCCCCGGCCCGGCCGCTGCTGCA CTGCATCTCGGCCTGCGGGCCGCGGCCCGGCCGCTGCTGCA < 41bp 0.452880104933452 0.768389353669571 0.114878714 0.44207537 prediction 0.536778707339141 Functional Gain - KRT86 ENSG00000170442 CDS Human protein_coding chr12:52695759 chr12:52695760 synonymous SNV . 0 22 hm5C_associated_SNPs_105220 0 0 0 0 1 KRT86 chr12:52695697 3'AG 52695697 Downstream 64bp
chr1 3672074 3672074 1 + T G SKCM 3672072 + 3672052 3672092 41 GATTGACAACAGCTCGGAGACCTGGAGAGGCACCCAGGACC GATTGACAACAGCTCGGAGACCGGGAGAGGCACCCAGGACC < 41bp 0.42869074401043 0.768344797313405 0.24869063 0.6912251 prediction 0.536689594626811 Functional Gain - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3672072 chr1:3672074 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_105225 0 0 0 0 2 CCDC27 chr1:3672021 3'AG 3672021 Downstream 54bp
chr1 3672074 3672074 1 + T G SKCM 3672072 + 3672052 3672092 41 GATTGACAACAGCTCGGAGACCTGGAGAGGCACCCAGGACC GATTGACAACAGCTCGGAGACCGGGAGAGGCACCCAGGACC < 41bp 0.42869074401043 0.768344797313405 0.24869063 0.6912251 prediction 0.536689594626811 Functional Gain - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3672072 chr1:3672074 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_105225 0 0 0 0 2 CCDC27 chr1:3672131 5'GT 3672131 Upstream 58bp
chr11 94040418 94040418 1 + T A rs200855633 94040414 + 94040394 94040434 41 GAGTGGTGGGAAGACTGTCGCATGTCTTACACATGCAAATC GAGTGGTGGGAAGACTGTCGCATGACTTACACATGCAAATC < 41bp 0.458601675936016 0.768334533237019 0.21111578 0.83745897 prediction 0.536669066474038 Functional Gain - IZUMO1R ENSG00000183560 CDS Human protein_coding chr11:94040414 chr11:94040418 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_105227 0 0 1 0 1 IZUMO1R chr11:94040331 3'AG 94040331 Downstream 88bp
chr5 7895940 7895940 1 + C G OV 7895939 + 7895919 7895959 41 GGTCCAGGAACCGGCATAGCCCCGTTTATTGGGTTCCTACA GGTCCAGGAACCGGCATAGCCGCGTTTATTGGGTTCCTACA < 41bp 0.544626174318578 0.812952028445257 0.047632635 0.17856684 prediction 0.536651708253358 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7895939 chr5:7895940 nonsynonymous SNV 0.746 5 22 hm5C_associated_SNPs_105228 0 0 0 0 2 MTRR chr5:7895847 3'AG 7895847 Downstream 94bp
chr5 7895940 7895940 1 + C G OV 7895939 + 7895919 7895959 41 GGTCCAGGAACCGGCATAGCCCCGTTTATTGGGTTCCTACA GGTCCAGGAACCGGCATAGCCGCGTTTATTGGGTTCCTACA < 41bp 0.544626174318578 0.812952028445257 0.047632635 0.17856684 prediction 0.536651708253358 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7895939 chr5:7895940 nonsynonymous SNV 0.746 5 22 hm5C_associated_SNPs_105228 0 0 0 0 2 MTRR chr5:7895965 5'GT 7895965 Upstream 26bp
chr12 94243772 94243772 1 + C A GBM 94243768 + 94243748 94243788 41 GACAGATTGACTGGGATCCCCTCGCACATCCTCAACAGCTC GACAGATTGACTGGGATCCCCTCGAACATCCTCAACAGCTC < 41bp 0.370996217618262 0.768296840413854 0.39546347 0.9228593 prediction 0.536593680827708 Functional Gain - CRADD ENSG00000169372 CDS Human protein_coding chr12:94243768 chr12:94243772 nonsynonymous SNV 0.096 1 25 hm5C_associated_SNPs_105234 0 0 0 0 1 CRADD chr12:94243746 3'AG 94243746 Downstream 27bp
chrX 51638241 51638241 1 + C G UCEC 51638240 + 51638220 51638260 41 TCCACCTACTAACCAGGCCACCGCAGCTGCTAGTCCCCAGA TCCACCTACTAACCAGGCCACGGCAGCTGCTAGTCCCCAGA < 41bp 0.577921947111336 0.846213974533462 0.31970063 0.31490314 prediction 0.536584054844252 Functional Gain - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51638240 chrX:51638241 synonymous SNV . 0 22 hm5C_associated_SNPs_105235 0 0 1 0 1 MAGED1 chrX:51638149 3'AG 51638149 Downstream 93bp
chr15 91485730 91485730 1 + C G rs115978927 91485729 + 91485709 91485749 41 TCCATCCTGGGCGTGGAAAGCCAGGCTGTGTCCCTGGCTGC TCCATCCTGGGCGTGGAAAGCGAGGCTGTGTCCCTGGCTGC < 41bp 0.575962551748222 0.844241779146248 0.8988744 0.929211 prediction 0.536558454796052 Functional Gain - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91485729 chr15:91485730 nonsynonymous SNV 0.988 0 22 hm5C_associated_SNPs_105237 0 0 1 0 1 UNC45A chr15:91485667 3'AG 91485667 Downstream 64bp
chr19 36033899 36033899 1 - G T TGCT 36033903 - 36033883 36033923 41 ACCCTTCCACGATCCCAAATCGCTCGTGGATGACTTTGGCG ACCCTTCCACGATCCCAAATCGCTAGTGGATGACTTTGGCG < 41bp 0.351725509054662 0.768266132854329 0.10886425 0.12319079 prediction 0.536532265708657 Functional Gain - GAPDHS ENSG00000105679 CDS Human antisense chr19:36033903 chr19:36033899 stopgain 0.616 1 25 hm5C_associated_SNPs_105239 0 0 1 0 1 TMEM147-AS1 chr19:36033813 5'GT 36033813 Upstream 87bp
chr15 67786628 67786628 1 + T C UCEC 67786626 + 67786606 67786646 41 GAGGATCTCCAGGGGGTCCTCATGACCTTTGCTCGCCATCT GAGGATCTCCAGGGGGTCCTCACGACCTTTGCTCGCCATCT < 41bp 0.490250792177244 0.76823926933014 0.19481659 0.27871382 prediction 0.536478538660281 Functional Gain - IQCH ENSG00000103599 CDS Human protein_coding chr15:67786626 chr15:67786628 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_105244 0 0 0 0 2 IQCH chr15:67786596 3'AG 67786596 Downstream 33bp
chr15 67786628 67786628 1 + T C UCEC 67786626 + 67786606 67786646 41 GAGGATCTCCAGGGGGTCCTCATGACCTTTGCTCGCCATCT GAGGATCTCCAGGGGGTCCTCACGACCTTTGCTCGCCATCT < 41bp 0.490250792177244 0.76823926933014 0.19481659 0.27871382 prediction 0.536478538660281 Functional Gain - IQCH ENSG00000103599 CDS Human protein_coding chr15:67786626 chr15:67786628 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_105244 0 0 0 0 2 IQCH chr15:67786704 5'GT 67786704 Upstream 77bp
chr7 6187447 6187447 1 + T G UCEC 6187445 + 6187425 6187465 41 CAGTCCTCTCCCCGCCCCGTCATCAGTCAGCGGGTTGTCAC CAGTCCTCTCCCCGCCCCGTCAGCAGTCAGCGGGTTGTCAC < 41bp 0.415215111165751 0.768234322140579 0.018135816 0.053934723 prediction 0.536468644281158 Functional Gain - USP42 ENSG00000106346 CDS Human protein_coding chr7:6187445 chr7:6187447 nonsynonymous SNV 0.827 0 23 hm5C_associated_SNPs_105245 0 0 1 0 2 USP42 chr7:6187370 3'AG 6187370 Downstream 78bp
chr7 6187447 6187447 1 + T G UCEC 6187445 + 6187425 6187465 41 CAGTCCTCTCCCCGCCCCGTCATCAGTCAGCGGGTTGTCAC CAGTCCTCTCCCCGCCCCGTCAGCAGTCAGCGGGTTGTCAC < 41bp 0.415215111165751 0.768234322140579 0.018135816 0.053934723 prediction 0.536468644281158 Functional Gain - USP42 ENSG00000106346 CDS Human protein_coding chr7:6187445 chr7:6187447 nonsynonymous SNV 0.827 0 23 hm5C_associated_SNPs_105245 0 0 1 0 2 USP42 chr7:6187523 5'GT 6187523 Upstream 77bp
chr19 50905129 50905129 1 + C G BLCA 50905125 + 50905105 50905145 41 GGTCACCGATGAGGGGTTCTCTGTCTGCTGCCACATCCACG GGTCACCGATGAGGGGTTCTCTGTGTGCTGCCACATCCACG < 41bp 0.532347961446868 0.800576574737381 0.18431386 0.3436668 prediction 0.536457226581024 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905125 chr19:50905129 synonymous SNV . 0 25 hm5C_associated_SNPs_105248 0 0 1 0 2 POLD1 chr19:50905035 3'AG 50905035 Downstream 95bp
chr19 50905129 50905129 1 + C G BLCA 50905125 + 50905105 50905145 41 GGTCACCGATGAGGGGTTCTCTGTCTGCTGCCACATCCACG GGTCACCGATGAGGGGTTCTCTGTGTGCTGCCACATCCACG < 41bp 0.532347961446868 0.800576574737381 0.18431386 0.3436668 prediction 0.536457226581024 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905125 chr19:50905129 synonymous SNV . 0 25 hm5C_associated_SNPs_105248 0 0 1 0 2 POLD1 chr19:50905181 5'GT 50905181 Upstream 53bp
chr14 102276303 102276303 1 + C G rs200109462 102276299 + 102276279 102276319 41 GATGTTGACATGTAATAAAGCGGGCAGCAGGATGGTGGTGG GATGTTGACATGTAATAAAGCGGGGAGCAGGATGGTGGTGG < 41bp 0.516612523155698 0.784829754311105 0.75735235 0.91786593 prediction 0.536434462310815 Functional Gain - PPP2R5C ENSG00000078304 CDS Human protein_coding chr14:102276299 chr14:102276303 synonymous SNV . 0 25 hm5C_associated_SNPs_105251 0 0 1 0 1 PPP2R5C chr14:102276373 5'GT 102276373 Upstream 71bp
chr9 34489407 34489407 1 + T A GBM 34489403 + 34489383 34489423 41 GAACCTGATCCCCAAAGACTCAGATGAAGGACGGCGGCAGC GAACCTGATCCCCAAAGACTCAGAAGAAGGACGGCGGCAGC < 41bp 0.578268912351029 0.846479851929904 0.81350595 0.53387624 prediction 0.536421879157751 Functional Gain - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34489403 chr9:34489407 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_105252 0 0 0 0 2 DNAI1 chr9:34489321 3'AG 34489321 Downstream 87bp
chr9 34489407 34489407 1 + T A GBM 34489403 + 34489383 34489423 41 GAACCTGATCCCCAAAGACTCAGATGAAGGACGGCGGCAGC GAACCTGATCCCCAAAGACTCAGAAGAAGGACGGCGGCAGC < 41bp 0.578268912351029 0.846479851929904 0.81350595 0.53387624 prediction 0.536421879157751 Functional Gain - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34489403 chr9:34489407 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_105252 0 0 0 0 2 DNAI1 chr9:34489447 5'GT 34489447 Upstream 41bp
chr22 46685754 46685754 1 + C G rs182313981 46685750 + 46685730 46685770 41 TCTTCAACCAGCTGCTGATTCACGCGGCCTTAAACTGCACC TCTTCAACCAGCTGCTGATTCACGGGGCCTTAAACTGCACC < 41bp 0.528612145563492 0.796820610235107 0.4968623 0.8826825 prediction 0.53641692934323 Functional Gain - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46685750 chr22:46685754 nonsynonymous SNV 0.293 2 25 hm5C_associated_SNPs_105253 0 0 0 0 2 TTC38 chr22:46685723 3'AG 46685723 Downstream 32bp
chr22 46685754 46685754 1 + C G rs182313981 46685750 + 46685730 46685770 41 TCTTCAACCAGCTGCTGATTCACGCGGCCTTAAACTGCACC TCTTCAACCAGCTGCTGATTCACGGGGCCTTAAACTGCACC < 41bp 0.528612145563492 0.796820610235107 0.4968623 0.8826825 prediction 0.53641692934323 Functional Gain - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46685750 chr22:46685754 nonsynonymous SNV 0.293 2 25 hm5C_associated_SNPs_105253 0 0 0 0 2 TTC38 chr22:46685796 5'GT 46685796 Upstream 43bp
chr17 20347224 20347224 1 + C G rs549067966 20347223 + 20347203 20347243 41 CCAAATGAGGACCACATCTACCAGGAGGAGATGCTGGAGAT CCAAATGAGGACCACATCTACGAGGAGGAGATGCTGGAGAT < 41bp 0.530838099024236 0.799035344012901 0.17417842 0.8682752 prediction 0.53639448997733 Functional Gain - NOS2P3 ENSG00000230528 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:20347223 chr17:20347224 . . 0 22 hm5C_associated_SNPs_105256 0 0 0 0 2 NOS2P3 chr17:20347159 3'AG 20347159 Downstream 66bp
chr17 20347224 20347224 1 + C G rs549067966 20347223 + 20347203 20347243 41 CCAAATGAGGACCACATCTACCAGGAGGAGATGCTGGAGAT CCAAATGAGGACCACATCTACGAGGAGGAGATGCTGGAGAT < 41bp 0.530838099024236 0.799035344012901 0.17417842 0.8682752 prediction 0.53639448997733 Functional Gain - NOS2P3 ENSG00000230528 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:20347223 chr17:20347224 . . 0 22 hm5C_associated_SNPs_105256 0 0 0 0 2 NOS2P3 chr17:20347307 5'GT 20347307 Upstream 84bp
chr16 1815986 1815986 1 + C G rs200111591 1815982 + 1815962 1816002 41 GGCCAGCGACAGCGACTACCCTCCCGGGGAGATGTTCCTGG GGCCAGCGACAGCGACTACCCTCCGGGGGAGATGTTCCTGG < 41bp 0.515830301987313 0.784027017598861 0.17058876 0.39195445 prediction 0.536393431223096 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1815982 chr16:1815986 synonymous SNV . 0 25 hm5C_associated_SNPs_105257 0 0 0 0 1 MAPK8IP3 chr16:1815961 3'AG 1815961 Downstream 26bp
chr12 81102631 81102631 1 + T A SKCM 81102627 + 81102607 81102647 41 GTTTTTTCGCTCAGGAGGAGCAAGTATTGATTCGTCAGCCT GTTTTTTCGCTCAGGAGGAGCAAGAATTGATTCGTCAGCCT < 41bp 0.547716838801486 0.815902142834284 0.8935416 0.8487752 prediction 0.536370608065596 Functional Gain - MYF6 ENSG00000111046 CDS Human protein_coding chr12:81102627 chr12:81102631 nonsynonymous SNV 0.008 1 25 hm5C_associated_SNPs_105258 0 0 0 0 1 MYF6 chr12:81102621 3'AG 81102621 Downstream 11bp
chr17 30621407 30621407 1 + C A SARC 30621403 + 30621383 30621423 41 TGAAGAACTCCCTGGTTTACCACCCACAGCTGCGAGCACAG TGAAGAACTCCCTGGTTTACCACCAACAGCTGCGAGCACAG < 41bp 0.329565603151543 0.768177467691019 0.045082778 0.24257836 prediction 0.536354935382039 Functional Gain - RHBDL3 ENSG00000141314 CDS Human protein_coding chr17:30621403 chr17:30621407 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_105259 0 0 0 0 1 RHBDL3 chr17:30621313 3'AG 30621313 Downstream 95bp
chr9 17793437 17793437 1 + T A LIHC 17793433 + 17793413 17793453 41 ACGAATGAGCCTGGAGTTTCCAACTGGAGACAGTACTCAGC ACGAATGAGCCTGGAGTTTCCAACAGGAGACAGTACTCAGC < 41bp 0.58041683920867 0.84859198748993 0.16159165 0.23647255 prediction 0.536350296562518 Functional Gain - SH3GL2 ENSG00000107295 CDS Human protein_coding chr9:17793433 chr9:17793437 synonymous SNV . 0 25 hm5C_associated_SNPs_105260 0 0 0 0 2 SH3GL2 chr9:17793365 3'AG 17793365 Downstream 73bp
chr9 17793437 17793437 1 + T A LIHC 17793433 + 17793413 17793453 41 ACGAATGAGCCTGGAGTTTCCAACTGGAGACAGTACTCAGC ACGAATGAGCCTGGAGTTTCCAACAGGAGACAGTACTCAGC < 41bp 0.58041683920867 0.84859198748993 0.16159165 0.23647255 prediction 0.536350296562518 Functional Gain - SH3GL2 ENSG00000107295 CDS Human protein_coding chr9:17793433 chr9:17793437 synonymous SNV . 0 25 hm5C_associated_SNPs_105260 0 0 0 0 2 SH3GL2 chr9:17793495 5'GT 17793495 Upstream 59bp
chr1 171178027 171178027 1 + T A LIHC 171178023 + 171178003 171178043 41 ATAGGTGCGAAGCCAGATTTCTGCTCTCTCTTGTTCAAAGA ATAGGTGCGAAGCCAGATTTCTGCACTCTCTTGTTCAAAGA < 41bp 0.579535868522478 0.847619414881503 0.18185988 0.17941138 prediction 0.536167092718049 Functional Gain - FMO2 ENSG00000094963 CDS Human protein_coding chr1:171178023 chr1:171178027 nonsynonymous SNV 0.030 0 25 hm5C_associated_SNPs_105267 0 0 0 0 1 FMO2 chr1:171177933 3'AG 171177933 Downstream 95bp
chrX 38280311 38280311 1 + T A UCEC 38280307 + 38280287 38280327 41 GTCCCTGCTGACAGATTACTCACCTCAGCTCCAGAAGCCTA GTCCCTGCTGACAGATTACTCACCACAGCTCCAGAAGCCTA < 41bp 0.581947576693756 0.85002296105121 0.0809201 0.044068873 prediction 0.536150768714909 Functional Gain - OTC ENSG00000036473 CDS Human protein_coding chrX:38280307 chrX:38280311 synonymous SNV . 0 25 hm5C_associated_SNPs_105268 0 0 0 0 1 OTC chrX:38280276 3'AG 38280276 Downstream 36bp
chr2 73901983 73901983 1 + C G LUAD 73901982 + 73901962 73902002 41 TCCTTAGTCTTCCTGGCTGTCCAGAAGAACAAGCCTATCAG TCCTTAGTCTTCCTGGCTGTCGAGAAGAACAAGCCTATCAG < 41bp 0.557054398902678 0.825112266917537 0.66857374 0.8989636 prediction 0.536115736029717 Functional Gain - ALMS1P1 ENSG00000163016 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:73901982 chr2:73901983 . . 0 22 hm5C_associated_SNPs_105271 0 0 0 0 2 ALMS1P1 chr2:73901969 3'AG 73901969 Downstream 15bp
chr2 73901983 73901983 1 + C G LUAD 73901982 + 73901962 73902002 41 TCCTTAGTCTTCCTGGCTGTCCAGAAGAACAAGCCTATCAG TCCTTAGTCTTCCTGGCTGTCGAGAAGAACAAGCCTATCAG < 41bp 0.557054398902678 0.825112266917537 0.66857374 0.8989636 prediction 0.536115736029717 Functional Gain - ALMS1P1 ENSG00000163016 ncRNA_exonic Human other chr2:73901982 chr2:73901983 . . 0 22 hm5C_associated_SNPs_105271 0 0 0 0 2 ALMS1P1 chr2:73902032 5'GT 73902032 Upstream 50bp
chr2 108999891 108999891 1 + T C UCEC 108999889 + 108999869 108999909 41 CAGTGTGCTGGGGCTCCTGGCATGAACATGTGAAAGGATGG CAGTGTGCTGGGGCTCCTGGCACGAACATGTGAAAGGATGG < 41bp 0.513404639767404 0.781448721679347 0.113082826 0.07813379 prediction 0.536088163823886 Functional Gain - SULT1C4 ENSG00000198075 CDS Human protein_coding chr2:108999889 chr2:108999891 synonymous SNV . 0 23 hm5C_associated_SNPs_105272 0 0 0 0 1 SULT1C4 chr2:108999966 5'GT 108999966 Upstream 76bp
chr2 1546277 1546277 1 + T A BLCA 1546273 + 1546253 1546293 41 AGTGGCAGGACACTGCAGAACAGCTTCATGTTCCCAAAATC AGTGGCAGGACACTGCAGAACAGCATCATGTTCCCAAAATC < 41bp 0.547789311015946 0.815817637379821 0.3675893 0.3610999 prediction 0.53605665272775 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1546273 chr2:1546277 synonymous SNV . 0 25 hm5C_associated_SNPs_105274 0 0 0 0 1 TPO chr2:1546193 3'AG 1546193 Downstream 85bp
chr6 26384080 26384080 1 + C A UCEC 26384076 + 26384056 26384096 41 CCAGCTGCTGCTCTGCACTTCTCCCTGCCAGCCTCCCTCCT CCAGCTGCTGCTCTGCACTTCTCCATGCCAGCCTCCCTCCT < 41bp 0.342844728172504 0.767981445991079 0.4201225 0.96744347 prediction 0.535962891982157 Functional Gain - BTN2A2 ENSG00000124508 CDS Human protein_coding chr6:26384076 chr6:26384080 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_105276 0 0 0 0 2 BTN2A2 chr6:26384020 3'AG 26384020 Downstream 61bp
chr6 26384080 26384080 1 + C A UCEC 26384076 + 26384056 26384096 41 CCAGCTGCTGCTCTGCACTTCTCCCTGCCAGCCTCCCTCCT CCAGCTGCTGCTCTGCACTTCTCCATGCCAGCCTCCCTCCT < 41bp 0.342844728172504 0.767981445991079 0.4201225 0.96744347 prediction 0.535962891982157 Functional Gain - BTN2A2 ENSG00000124508 CDS Human protein_coding chr6:26384076 chr6:26384080 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_105276 0 0 0 0 2 BTN2A2 chr6:26384143 5'GT 26384143 Upstream 64bp
chr5 126145907 126145907 1 + C A UCEC 126145903 + 126145883 126145923 41 GACCAGAAGGAAGCATGAAACGCGCTTGGTAGAGGTGGATT GACCAGAAGGAAGCATGAAACGCGATTGGTAGAGGTGGATT < 41bp 0.646562960997634 0.914484291046551 0.406878 0.41572806 prediction 0.535842660097834 Functional Gain - LMNB1 ENSG00000113368 CDS Human protein_coding chr5:126145903 chr5:126145907 synonymous SNV . 0 25 hm5C_associated_SNPs_105282 0 0 1 0 1 LMNB1 chr5:126145872 3'AG 126145872 Downstream 36bp
chr11 60198329 60198329 1 + T A LUAD 60198325 + 60198305 60198345 41 TTTGGAGTTATCTTCCTTTTCACCTTGTTAAAACCATATCC TTTGGAGTTATCTTCCTTTTCACCATGTTAAAACCATATCC < 41bp 0.590637865926813 0.858550934853617 0.03801319 0.030723602 prediction 0.535826137853607 Functional Gain - MS4A5 ENSG00000166930 CDS Human protein_coding chr11:60198325 chr11:60198329 nonsynonymous SNV 0.677 0 25 hm5C_associated_SNPs_105283 0 0 0 0 2 MS4A5 chr11:60198269 3'AG 60198269 Downstream 61bp
chr11 60198329 60198329 1 + T A LUAD 60198325 + 60198305 60198345 41 TTTGGAGTTATCTTCCTTTTCACCTTGTTAAAACCATATCC TTTGGAGTTATCTTCCTTTTCACCATGTTAAAACCATATCC < 41bp 0.590637865926813 0.858550934853617 0.03801319 0.030723602 prediction 0.535826137853607 Functional Gain - MS4A5 ENSG00000166930 CDS Human protein_coding chr11:60198325 chr11:60198329 nonsynonymous SNV 0.677 0 25 hm5C_associated_SNPs_105283 0 0 0 0 2 MS4A5 chr11:60198397 5'GT 60198397 Upstream 69bp
chr22 51182579 51182579 1 + T A SKCM 51182575 + 51182555 51182595 41 CGACCCAGTGGTACAATGGGCGCGTTCAGCCAACCAATGTG CGACCCAGTGGTACAATGGGCGCGATCAGCCAACCAATGTG < 41bp 0.590452619171576 0.858346804505845 0.33754724 0.43334743 prediction 0.535788370668538 Functional Gain - ACR ENSG00000100312 CDS Human protein_coding chr22:51182575 chr22:51182579 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_105285 0 0 0 0 2 ACR chr22:51182489 3'AG 51182489 Downstream 91bp
chr22 51182579 51182579 1 + T A SKCM 51182575 + 51182555 51182595 41 CGACCCAGTGGTACAATGGGCGCGTTCAGCCAACCAATGTG CGACCCAGTGGTACAATGGGCGCGATCAGCCAACCAATGTG < 41bp 0.590452619171576 0.858346804505845 0.33754724 0.43334743 prediction 0.535788370668538 Functional Gain - ACR ENSG00000100312 CDS Human protein_coding chr22:51182575 chr22:51182579 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_105285 0 0 0 0 2 ACR chr22:51182634 5'GT 51182634 Upstream 56bp
chr2 207508994 207508994 1 + C G STAD 207508990 + 207508970 207509010 41 CCTGGGAACAGAGGAGGGATCCACCGCCCCTTGAGCTTCAC CCTGGGAACAGAGGAGGGATCCACGGCCCCTTGAGCTTCAC < 41bp 0.495783738976265 0.767881636464361 0.063862205 0.2456786 prediction 0.535763272928722 Functional Gain - FAM237A ENSG00000235118 ncRNA_exonic Human protein_coding chr2:207508990 chr2:207508994 . . 0 25 hm5C_associated_SNPs_105287 0 0 0 0 1 FAM237A chr2:207508951 3'AG 207508951 Downstream 44bp
chr5 126746208 126746208 1 + C G KIRC 126746204 + 126746184 126746224 41 TGTGAAGCAGGCTTTGCTGGCGAGCGCTGCGAAGCACGCCT TGTGAAGCAGGCTTTGCTGGCGAGGGCTGCGAAGCACGCCT < 41bp 0.545930545600603 0.813802405888805 0.52837205 0.9088893 prediction 0.535743720576404 Functional Gain - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126746204 chr5:126746208 nonsynonymous SNV 0.135 0 25 hm5C_associated_SNPs_105289 0 0 0 0 1 MEGF10 chr5:126746293 5'GT 126746293 Upstream 86bp
chr11 63753920 63753920 1 + T G UCEC 63753917 + 63753897 63753937 41 GGAAGCGGTCGGTAGTGCGGCGCTGTTTAAAGATGGCGGCG GGAAGCGGTCGGTAGTGCGGCGCGGTTTAAAGATGGCGGCG < 41bp 0.488715344263337 0.76780830806185 0.13646701 0.4162285 prediction 0.5356166161237 Functional Gain - OTUB1 ENSG00000167770;ENSG00000256100 CDS Human other chr11:63753917 chr11:63753920 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_105297 0 0 1 0 1 OTUB1 chr11:63753986 5'GT 63753986 Upstream 67bp
chr21 44313401 44313401 1 + C G rs201202115 44313397 + 44313377 44313417 41 CGGCTGTTCAGGCGCGGGTGCGCGCGCAGCTGCTGTGGCCC CGGCTGTTCAGGCGCGGGTGCGCGGGCAGCTGCTGTGGCCC < 41bp 0.521404345631507 0.78919140557681 0.39242637 0.90847623 prediction 0.535574119890608 Functional Gain - NDUFV3 ENSG00000160194 UTR5 Human protein_coding chr21:44313397 chr21:44313401 . . 0 25 hm5C_associated_SNPs_105299 0 0 1 0 1 NDUFV3 chr21:44313491 5'GT 44313491 Upstream 91bp
chr19 49843594 49843594 1 + C G rs201920299 49843590 + 49843570 49843610 41 CGCTCGATACCGTTAGGCCCCGCCCTCCCCAAAGTCCCGCC CGCTCGATACCGTTAGGCCCCGCCGTCCCCAAAGTCCCGCC < 41bp 0.479813532581332 0.767785039706658 0.119140774 0.15265962 prediction 0.535570079413316 Functional Gain - CD37 ENSG00000197813 ncRNA_exonic Human protein_coding chr19:49843590 chr19:49843594 . . 0 25 hm5C_associated_SNPs_105300 0 0 1 0 1 CD37 chr19:49843508 3'AG 49843508 Downstream 87bp
chr7 100198208 100198208 1 + C G CESC 100198204 + 100198184 100198224 41 GCCACCAGGGAGTGCCTATACATCCTGTCCAGCCACGACAT GCCACCAGGGAGTGCCTATACATCGTGTCCAGCCACGACAT < 41bp 0.527370363390411 0.795145539187064 0.01060909 0.039041907 prediction 0.535550351593305 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100198204 chr7:100198208 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_105301 0 0 0 0 1 FBXO24 chr7:100198157 3'AG 100198157 Downstream 52bp
chr7 99578430 99578430 1 + T A LUAD 99578426 + 99578406 99578446 41 TGGTGTCTGTCCTGCTGTCTCTGCTGCTGCTTCTGGGTCCT TGGTGTCTGTCCTGCTGTCTCTGCAGCTGCTTCTGGGTCCT < 41bp 0.567853743255373 0.83560345528711 0.25144416 0.37675208 prediction 0.535499424063473 Functional Gain - AZGP1P1 ENSG00000214313 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:99578426 chr7:99578430 . . 0 25 hm5C_associated_SNPs_105304 0 0 0 0 1 AZGP1P1 chr7:99578471 5'GT 99578471 Upstream 42bp
chr1 57333306 57333306 1 + C G LUAD 57333302 + 57333282 57333322 41 GAGAGTAAGACGGGCAGCTACACCCGCAGCAGTTACCTGCC GAGAGTAAGACGGGCAGCTACACCGGCAGCAGTTACCTGCC < 41bp 0.553296222058405 0.821042940424376 0.39499402 0.8834599 prediction 0.535493436731943 Functional Gain - C8A ENSG00000157131 CDS Human protein_coding chr1:57333302 chr1:57333306 synonymous SNV . 0 25 hm5C_associated_SNPs_105305 0 0 0 0 2 C8A chr1:57333282 3'AG 57333282 Downstream 25bp
chr1 57333306 57333306 1 + C G LUAD 57333302 + 57333282 57333322 41 GAGAGTAAGACGGGCAGCTACACCCGCAGCAGTTACCTGCC GAGAGTAAGACGGGCAGCTACACCGGCAGCAGTTACCTGCC < 41bp 0.553296222058405 0.821042940424376 0.39499402 0.8834599 prediction 0.535493436731943 Functional Gain - C8A ENSG00000157131 CDS Human protein_coding chr1:57333302 chr1:57333306 synonymous SNV . 0 25 hm5C_associated_SNPs_105305 0 0 0 0 2 C8A chr1:57333375 5'GT 57333375 Upstream 70bp
chr6 25669793 25669793 1 + C G SKCM 25669792 + 25669772 25669812 41 TTTATATCAGCTGCTGAGCTCCGCGTGAGTGTCACTGGGTG TTTATATCAGCTGCTGAGCTCGGCGTGAGTGTCACTGGGTG < 41bp 0.459745833239433 0.767746618923316 0.40032068 0.8796631 prediction 0.535493237846633 Functional Gain - SCGN ENSG00000079689 CDS Human protein_coding chr6:25669792 chr6:25669793 nonsynonymous SNV 0.066 1 22 hm5C_associated_SNPs_105306 0 0 0 0 2 SCGN chr6:25669739 3'AG 25669739 Downstream 55bp
chr6 25669793 25669793 1 + C G SKCM 25669792 + 25669772 25669812 41 TTTATATCAGCTGCTGAGCTCCGCGTGAGTGTCACTGGGTG TTTATATCAGCTGCTGAGCTCGGCGTGAGTGTCACTGGGTG < 41bp 0.459745833239433 0.767746618923316 0.40032068 0.8796631 prediction 0.535493237846633 Functional Gain - SCGN ENSG00000079689 CDS Human protein_coding chr6:25669792 chr6:25669793 nonsynonymous SNV 0.066 1 22 hm5C_associated_SNPs_105306 0 0 0 0 2 SCGN chr6:25669795 5'GT 25669795 Upstream 3bp
chr20 56726068 56726068 1 + T G PRAD 56726066 + 56726046 56726086 41 CGGCGGCTGAACGCATGAACCTTGTGGGTCAGGATGAGATC CGGCGGCTGAACGCATGAACCTGGTGGGTCAGGATGAGATC < 41bp 0.60227551587286 0.870006289944708 0.037562072 0.35358998 prediction 0.535461548143696 Functional Gain - C20orf85 ENSG00000124237 CDS Human protein_coding chr20:56726066 chr20:56726068 synonymous SNV . 0 23 hm5C_associated_SNPs_105310 0 0 0 0 1 C20orf85 chr20:56726088 5'GT 56726088 Upstream 21bp
chr16 55608548 55608548 1 + T C UCEC 55608546 + 55608526 55608566 41 ATCCCATCCTTTCACAGAACCATGATGGCAGCATTGACTTC ATCCCATCCTTTCACAGAACCACGATGGCAGCATTGACTTC < 41bp 0.521480140031362 0.789208902156343 0.07682365 0.0836665 prediction 0.535457524249962 Functional Gain - LPCAT2 ENSG00000087253 CDS Human protein_coding chr16:55608546 chr16:55608548 synonymous SNV . 0 23 hm5C_associated_SNPs_105311 0 0 0 0 2 LPCAT2 chr16:55608543 3'AG 55608543 Downstream 6bp
chr16 55608548 55608548 1 + T C UCEC 55608546 + 55608526 55608566 41 ATCCCATCCTTTCACAGAACCATGATGGCAGCATTGACTTC ATCCCATCCTTTCACAGAACCACGATGGCAGCATTGACTTC < 41bp 0.521480140031362 0.789208902156343 0.07682365 0.0836665 prediction 0.535457524249962 Functional Gain - LPCAT2 ENSG00000087253 CDS Human protein_coding chr16:55608546 chr16:55608548 synonymous SNV . 0 23 hm5C_associated_SNPs_105311 0 0 0 0 2 LPCAT2 chr16:55608641 5'GT 55608641 Upstream 94bp
chr12 112919948 112919948 1 + T G HNSC 112919946 + 112919926 112919966 41 GGCGTCATGCGTGTTAGGAACGTCAAAGAAAGCGCCGCTCA GGCGTCATGCGTGTTAGGAACGGCAAAGAAAGCGCCGCTCA < 41bp 0.581330787323873 0.849050172087383 0.18296868 0.36841255 prediction 0.535438769527021 Functional Gain - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112919946 chr12:112919948 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_105312 0 0 0 0 1 PTPN11 chr12:112920009 5'GT 112920009 Upstream 62bp
chr10 104215165 104215165 1 + C G rs143449005 104215164 + 104215144 104215184 41 TGATCCTCCTACCTCAGCTTCCTGAGTAGCTAGGACCACAG TGATCCTCCTACCTCAGCTTCGTGAGTAGCTAGGACCACAG < 41bp 0.555765411272853 0.823433910206885 0.15189981 0.4186526 prediction 0.535336997868063 Functional Gain - RPARP-AS1 ENSG00000269609 ncRNA_exonic Human processed_transcript chr10:104215164 chr10:104215165 . . 0 22 hm5C_associated_SNPs_105318 0 0 1 0 1 RPARP-AS1 chr10:104215094 3'AG 104215094 Downstream 72bp
chr11 120099671 120099671 1 + C A rs149920245 120099667 + 120099647 120099687 41 GGTGGGGGACCACGGGAAGCCCTGCGTCTGCCGCTATGGCC GGTGGGGGACCACGGGAAGCCCTGAGTCTGCCGCTATGGCC < 41bp 0.389143655040916 0.767658689862241 0.4717997 0.84245414 prediction 0.535317379724482 Functional Gain - OAF ENSG00000184232 CDS Human protein_coding chr11:120099667 chr11:120099671 stopgain 0.003 1 25 hm5C_associated_SNPs_105320 0 0 0 0 1 OAF chr11:120099577 3'AG 120099577 Downstream 95bp
chr12 113724851 113724851 1 + T C UCEC 113724849 + 113724829 113724869 41 CTGCTGGCGCTGGCCCTCAACATGGAGCCCTTCTATTTCAT CTGCTGGCGCTGGCCCTCAACACGGAGCCCTTCTATTTCAT < 41bp 0.511243679836726 0.778891334014171 0.053029746 0.11365911 prediction 0.535295308354891 Functional Gain - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113724849 chr12:113724851 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_105321 0 0 1 0 2 TPCN1 chr12:113724792 3'AG 113724792 Downstream 60bp
chr12 113724851 113724851 1 + T C UCEC 113724849 + 113724829 113724869 41 CTGCTGGCGCTGGCCCTCAACATGGAGCCCTTCTATTTCAT CTGCTGGCGCTGGCCCTCAACACGGAGCCCTTCTATTTCAT < 41bp 0.511243679836726 0.778891334014171 0.053029746 0.11365911 prediction 0.535295308354891 Functional Gain - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113724849 chr12:113724851 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_105321 0 0 1 0 2 TPCN1 chr12:113724899 5'GT 113724899 Upstream 49bp
chr16 31500071 31500071 1 + C A LUAD 31500067 + 31500047 31500087 41 CGCCTGCGGCCACGCGCCGGCGACCGCGAGCTGCTGCTGGT CGCCTGCGGCCACGCGCCGGCGACAGCGAGCTGCTGCTGGT < 41bp 0.371979963628037 0.767641503812973 0.16442558 0.4423351 prediction 0.535283007625946 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500067 chr16:31500071 nonsynonymous SNV 0.235 2 25 hm5C_associated_SNPs_105322 0 0 0 0 1 SLC5A2 chr16:31500093 5'GT 31500093 Upstream 23bp
chr19 42265883 42265883 1 + C G LUSC 42265882 + 42265862 42265902 41 TTCTCTTTCCTCCAGATGGCCCAGATGGCCCCACCATTTCC TTCTCTTTCCTCCAGATGGCCGAGATGGCCCCACCATTTCC < 41bp 0.457148417949227 0.767633044814438 0.0065131485 0.04964739 prediction 0.535266089628876 Functional Gain - CEACAM6 ENSG00000086548 CDS Human protein_coding chr19:42265882 chr19:42265883 nonsynonymous SNV 0.162 3 22 hm5C_associated_SNPs_105323 0 0 0 0 1 CEACAM6 chr19:42265877 3'AG 42265877 Downstream 7bp
chr17 73753534 73753534 1 + C G rs200199740 73753530 + 73753510 73753550 41 GGGGGCCCAGCACCTGGAGGCAGGCGGCTCCCTCACCCGGC GGGGGCCCAGCACCTGGAGGCAGGGGGCTCCCTCACCCGGC < 41bp 0.49791725241817 0.767629676863906 0.9369118 0.9498056 prediction 0.535259353727812 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73753530 chr17:73753534 synonymous SNV . 0 25 hm5C_associated_SNPs_105324 0 0 0 0 1 ITGB4 chr17:73753497 3'AG 73753497 Downstream 38bp
chr21 43963599 43963599 1 + T G SKCM 43963597 + 43963577 43963617 41 CACACCTCCGTGGGCAACATCTTGGGGTCATTGATCGCTGG CACACCTCCGTGGGCAACATCTGGGGGTCATTGATCGCTGG < 41bp 0.615121218011378 0.882722234748661 0.63822967 0.93136716 prediction 0.535202033474566 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43963597 chr21:43963599 nonsynonymous SNV 0.615 3 23 hm5C_associated_SNPs_105326 0 0 0 0 1 SLC37A1 chr21:43963546 3'AG 43963546 Downstream 54bp
chr1 116670185 116670185 1 + C T UCEC 116670184 + 116670164 116670204 41 CTGGTCCCCGCAGTGGAGATCCCCACCACCTGGTCCAAGAA CTGGTCCCCGCAGTGGAGATCTCCACCACCTGGTCCAAGAA < 41bp 0.51817661308891 0.785758795658192 0.17584035 0.9408203 prediction 0.535164365138563 Functional Gain - MAB21L3 ENSG00000173212 CDS Human protein_coding chr1:116670184 chr1:116670185 nonsynonymous SNV 0.951 2 22 hm5C_associated_SNPs_105327 0 0 0 0 2 MAB21L3 chr1:116670087 3'AG 116670087 Downstream 99bp
chr1 116670185 116670185 1 + C T UCEC 116670184 + 116670164 116670204 41 CTGGTCCCCGCAGTGGAGATCCCCACCACCTGGTCCAAGAA CTGGTCCCCGCAGTGGAGATCTCCACCACCTGGTCCAAGAA < 41bp 0.51817661308891 0.785758795658192 0.17584035 0.9408203 prediction 0.535164365138563 Functional Gain - MAB21L3 ENSG00000173212 CDS Human protein_coding chr1:116670184 chr1:116670185 nonsynonymous SNV 0.951 2 22 hm5C_associated_SNPs_105327 0 0 0 0 2 MAB21L3 chr1:116670265 5'GT 116670265 Upstream 81bp
chr20 37632409 37632409 1 + T A KIRC 37632405 + 37632385 37632425 41 TCTTTAGGAAGAGGTAGAAACTGTTGTGTCGATGCTCATCG TCTTTAGGAAGAGGTAGAAACTGTAGTGTCGATGCTCATCG < 41bp 0.444552710690975 0.767575788768846 0.27997622 0.38518175 prediction 0.535151577537693 Functional Gain - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37632405 chr20:37632409 synonymous SNV . 0 25 hm5C_associated_SNPs_105330 0 0 1 0 1 DHX35 chr20:37632392 3'AG 37632392 Downstream 18bp
chr11 193139 193139 1 + C G BLCA 193135 + 193115 193155 41 GCCCTCCTGCTGGTGGCCCTCACCCTGTTCTGCATCTGCCG GCCCTCCTGCTGGTGGCCCTCACCGTGTTCTGCATCTGCCG < 41bp 0.481347972371059 0.767512593134566 0.15379691 0.2688981 prediction 0.535025186269132 Functional Gain - SCGB1C1;SCGB1C2 ENSG00000188076 CDS Human protein_coding chr11:193135 chr11:193139 nonsynonymous SNV 0.163 0 25 hm5C_associated_SNPs_105341 0 0 0 0 1 SCGB1C1;SCGB1C2 chr11:193154 5'GT 193154 Upstream 16bp
chr7 157129802 157129802 1 + C G rs551880529 157129798 + 157129778 157129818 41 AGGAGATTCGGGCCGTCACCCTGCCTCCCCTGCGTCCCGCC AGGAGATTCGGGCCGTCACCCTGCGTCCCCTGCGTCCCGCC < 41bp 0.485853427369013 0.767477282857076 0.70665985 0.8160224 prediction 0.534954565714152 Functional Gain - DNAJB6 ENSG00000105993 UTR5 Human protein_coding chr7:157129798 chr7:157129802 . . 0 25 hm5C_associated_SNPs_105346 0 0 0 0 1 DNAJB6 chr7:157129838 5'GT 157129838 Upstream 37bp
chr1 207641950 207641950 1 + C G rs75282758 207641949 + 207641929 207641969 41 AGAATGTTGGCTCCATTGCTCCAGGATTGTCTGTGACTTAC AGAATGTTGGCTCCATTGCTCGAGGATTGTCTGTGACTTAC < 41bp 0.460971535289088 0.767472245181731 0.3417734 0.9179597 prediction 0.534944490363462 Functional Gain - CR2 ENSG00000117322 CDS Human protein_coding chr1:207641949 chr1:207641950 nonsynonymous SNV 0.019 2 22 hm5C_associated_SNPs_105349 0 0 0 0 1 CR2 chr1:207641872 3'AG 207641872 Downstream 79bp
chr15 83781578 83781578 1 + T C UCEC 83781576 + 83781556 83781596 41 ACTATTGTAGGGGTTGCTGCCCTCATCCTGTTCCTGGTAGC ACTATTGTAGGGGTTGCTGCCCCCATCCTGTTCCTGGTAGC < 41bp 0.543201895541051 0.810653173991756 0.08614865 0.22433197 prediction 0.53490255690141 Functional Gain - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83781576 chr15:83781578 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_105353 0 0 0 2 2 TM6SF1 chr15:83781549 3'AG 83781549 Downstream 30bp
chr15 83781578 83781578 1 + T C UCEC 83781576 + 83781556 83781596 41 ACTATTGTAGGGGTTGCTGCCCTCATCCTGTTCCTGGTAGC ACTATTGTAGGGGTTGCTGCCCCCATCCTGTTCCTGGTAGC < 41bp 0.543201895541051 0.810653173991756 0.08614865 0.22433197 prediction 0.53490255690141 Functional Gain - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83781576 chr15:83781578 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_105353 0 0 0 2 2 TM6SF1 chr15:83781652 5'GT 83781652 Upstream 75bp
chr6 111196387 111196387 1 + C G rs199935766 111196386 + 111196366 111196406 41 CGGCAGCAGCCCGACGCAAACCAAGGATCTGGGGATCTTCG CGGCAGCAGCCCGACGCAAACGAAGGATCTGGGGATCTTCG < 41bp 0.550515908391838 0.817939204600873 0.09668383 0.4054622 prediction 0.534846592418071 Functional Gain - AMD1 ENSG00000123505 CDS Human protein_coding chr6:111196386 chr6:111196387 nonsynonymous SNV 0.735 0 22 hm5C_associated_SNPs_105355 0 0 1 0 1 AMD1 chr6:111196418 5'GT 111196418 Upstream 32bp
chr6 33652420 33652420 1 + C G TGCT 33652419 + 33652399 33652439 41 CTGCAAAACTACCTCCAGAACCGGAAGTCCACCTCGCGGGG CTGCAAAACTACCTCCAGAACGGGAAGTCCACCTCGCGGGG < 41bp 0.554040527260017 0.821434150984485 0.92413044 0.9031584 prediction 0.534787247448937 Functional Gain - ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33652419 chr6:33652420 nonsynonymous SNV 0.916 1 22 hm5C_associated_SNPs_105358 0 0 0 0 2 ITPR3 chr6:33652375 3'AG 33652375 Downstream 46bp
chr6 33652420 33652420 1 + C G TGCT 33652419 + 33652399 33652439 41 CTGCAAAACTACCTCCAGAACCGGAAGTCCACCTCGCGGGG CTGCAAAACTACCTCCAGAACGGGAAGTCCACCTCGCGGGG < 41bp 0.554040527260017 0.821434150984485 0.92413044 0.9031584 prediction 0.534787247448937 Functional Gain - ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33652419 chr6:33652420 nonsynonymous SNV 0.916 1 22 hm5C_associated_SNPs_105358 0 0 0 0 2 ITPR3 chr6:33652465 5'GT 33652465 Upstream 46bp
chr3 150877801 150877801 1 + C A SKCM 150877797 + 150877777 150877817 41 CAGCCCTGGCCCCCCCGGCCCTGGCATGAGCCCCGTGCAGC CAGCCCTGGCCCCCCCGGCCCTGGAATGAGCCCCGTGCAGC < 41bp 0.377891024496992 0.767391021742067 0.58805394 0.8892697 prediction 0.534782043484135 Functional Gain - MED12L ENSG00000144893 CDS Human protein_coding chr3:150877797 chr3:150877801 synonymous SNV . 0 25 hm5C_associated_SNPs_105359 0 0 1 0 1 MED12L chr3:150877888 5'GT 150877888 Upstream 88bp
chr20 34526642 34526642 1 + C A SARC 34526638 + 34526618 34526658 41 GAAGCCGGGAGCATCCTGATCTGCCGCTGTGGTGCCAGCCT GAAGCCGGGAGCATCCTGATCTGCAGCTGTGGTGCCAGCCT < 41bp 0.343297681016041 0.767373399439585 0.14591819 0.54772955 prediction 0.534746798879171 Functional Gain - PHF20 ENSG00000025293 CDS Human protein_coding chr20:34526638 chr20:34526642 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_105363 0 0 1 0 1 PHF20 chr20:34526619 3'AG 34526619 Downstream 24bp
chr15 75043592 75043592 1 + C A rs17861157 75043588 + 75043568 75043608 41 CAGCAAGAAGGGGCCTAGAGCCAGCGGCAACCTCATCCCAC CAGCAAGAAGGGGCCTAGAGCCAGAGGCAACCTCATCCCAC < 41bp 0.365352488676653 0.767370367662272 0.8520632 0.89885783 prediction 0.534740735324544 Functional Gain - CYP1A2 ENSG00000140505 CDS Human protein_coding chr15:75043588 chr15:75043592 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_105365 0 0 0 0 2 CYP1A2 chr15:75043530 3'AG 75043530 Downstream 63bp
chr15 75043592 75043592 1 + C A rs17861157 75043588 + 75043568 75043608 41 CAGCAAGAAGGGGCCTAGAGCCAGCGGCAACCTCATCCCAC CAGCAAGAAGGGGCCTAGAGCCAGAGGCAACCTCATCCCAC < 41bp 0.365352488676653 0.767370367662272 0.8520632 0.89885783 prediction 0.534740735324544 Functional Gain - CYP1A2 ENSG00000140505 CDS Human protein_coding chr15:75043588 chr15:75043592 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_105365 0 0 0 0 2 CYP1A2 chr15:75043650 5'GT 75043650 Upstream 59bp
chr1 163039295 163039295 1 + T A LIHC 163039291 + 163039271 163039311 41 TAAGATGTGCAAAGGGCTTGCAGGTCTGCCGGCTTCTTGCT TAAGATGTGCAAAGGGCTTGCAGGACTGCCGGCTTCTTGCT < 41bp 0.572572357112101 0.839938523381029 0.73621094 0.8612168 prediction 0.534732332537857 Functional Gain - RGS4 ENSG00000117152 CDS Human protein_coding chr1:163039291 chr1:163039295 synonymous SNV . 0 25 hm5C_associated_SNPs_105367 0 0 0 0 1 RGS4 chr1:163039318 5'GT 163039318 Upstream 24bp
chr19 53957988 53957988 1 + T A STAD 53957984 + 53957964 53958004 41 TGTTCCATGCAGGGACATTGCAAATACATGAAAGTCATCAC TGTTCCATGCAGGGACATTGCAAAAACATGAAAGTCATCAC < 41bp 0.484265335738135 0.767362593477014 0.3312254 0.46799737 prediction 0.534725186954027 Functional Gain - ZNF761;ZNF765-ZNF761 ENSG00000160336 ncRNA_exonic Human protein_coding chr19:53957984 chr19:53957988 . 0.000 0 25 hm5C_associated_SNPs_105368 0 0 0 0 1 ZNF761;ZNF765-ZNF761 chr19:53957904 3'AG 53957904 Downstream 85bp
chr14 21467913 21467913 1 + T A rs2234632 21467909 + 21467889 21467929 41 GCTTTTTATTAGGTCATCACCGGCTAGTCCTCAGACTCCTG GCTTTTTATTAGGTCATCACCGGCAAGTCCTCAGACTCCTG < 41bp 0.581932607421863 0.849292320063419 0.3169116 0.3741522 prediction 0.534719425283111 Functional Gain - SLC39A2 ENSG00000165794 CDS Human protein_coding chr14:21467909 chr14:21467913 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_105369 0 0 0 0 1 SLC39A2 chr14:21467901 3'AG 21467901 Downstream 13bp
chr14 62120422 62120422 1 + C G rs113167783 62120418 + 62120398 62120438 41 TCTTCACCCAATCCCACAGCCACACGTGCCTGCTTGCTCAC TCTTCACCCAATCCCACAGCCACAGGTGCCTGCTTGCTCAC < 41bp 0.523753037041201 0.791088715611274 0.7186717 0.8478979 prediction 0.534671357140147 Functional Gain - FLJ22447 ENSG00000232774 CDS Human lincRNA chr14:62120418 chr14:62120422 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_105375 0 0 0 2 1 FLJ22447 chr14:62120341 3'AG 62120341 Downstream 82bp
chr4 124319665 124319665 1 + C G rs571675258 124319661 + 124319641 124319681 41 TTGGCCCCCGGCCACCGCTTCGGCCTAGGTGAGTGTGTGCG TTGGCCCCCGGCCACCGCTTCGGCGTAGGTGAGTGTGTGCG < 41bp 0.53105470185426 0.798378843552037 0.45899484 0.8389437 prediction 0.534648283395554 Functional Gain - SPRY1 ENSG00000164056 UTR5 Human protein_coding chr4:124319661 chr4:124319665 . . 0 25 hm5C_associated_SNPs_105376 0 0 1 0 1 SPRY1 chr4:124319668 5'GT 124319668 Upstream 4bp
chr2 233404775 233404775 1 + C A THCA 233404774 + 233404754 233404794 41 CTACGACCCCAACCTGCGGCCCGCGGAACGAGACTCGGATG CTACGACCCCAACCTGCGGCCAGCGGAACGAGACTCGGATG < 41bp 0.500303186720484 0.767625764343723 0.3813492 0.8989874 prediction 0.534645155246479 Functional Gain - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233404774 chr2:233404775 synonymous SNV . 0 22 hm5C_associated_SNPs_105378 0 0 0 0 2 CHRNG chr2:233404702 3'AG 233404702 Downstream 74bp
chr2 233404775 233404775 1 + C A THCA 233404774 + 233404754 233404794 41 CTACGACCCCAACCTGCGGCCCGCGGAACGAGACTCGGATG CTACGACCCCAACCTGCGGCCAGCGGAACGAGACTCGGATG < 41bp 0.500303186720484 0.767625764343723 0.3813492 0.8989874 prediction 0.534645155246479 Functional Gain - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233404774 chr2:233404775 synonymous SNV . 0 22 hm5C_associated_SNPs_105378 0 0 0 0 2 CHRNG chr2:233404841 5'GT 233404841 Upstream 67bp
chr3 57303633 57303633 1 - G C MESO 57303637 - 57303617 57303657 41 CTACTGCTAAGGACAACAAACTGCCCCTCACTACTGGCTTG CTACTGCTAAGGACAACAAACTGCGCCTCACTACTGGCTTG < 41bp 0.5198834233591 0.787182444648679 0.19814837 0.84426486 prediction 0.534598042579159 Functional Gain - APPL1 ENSG00000157500 CDS Human protein_coding chr3:57303637 chr3:57303633 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_105385 0 0 0 0 1 APPL1 chr3:57303646 3'AG 57303646 Downstream 14bp
chr17 42786723 42786723 1 + C G LAML 42786719 + 42786699 42786739 41 CCATGGCTGAGAGTAGGCTCCGGGCCCCGGACCTAGGTGGG CCATGGCTGAGAGTAGGCTCCGGGGCCCGGACCTAGGTGGG < 41bp 0.536287483522316 0.803577999821672 0.8682625 0.8981986 prediction 0.534581032598712 Functional Gain - DBF4B ENSG00000161692 CDS Human protein_coding chr17:42786719 chr17:42786723 nonsynonymous SNV 0.906 1 25 hm5C_associated_SNPs_105387 0 0 1 0 2 DBF4B chr17:42786672 3'AG 42786672 Downstream 52bp
chr17 42786723 42786723 1 + C G LAML 42786719 + 42786699 42786739 41 CCATGGCTGAGAGTAGGCTCCGGGCCCCGGACCTAGGTGGG CCATGGCTGAGAGTAGGCTCCGGGGCCCGGACCTAGGTGGG < 41bp 0.536287483522316 0.803577999821672 0.8682625 0.8981986 prediction 0.534581032598712 Functional Gain - DBF4B ENSG00000161692 CDS Human protein_coding chr17:42786719 chr17:42786723 nonsynonymous SNV 0.906 1 25 hm5C_associated_SNPs_105387 0 0 1 0 2 DBF4B chr17:42786734 5'GT 42786734 Upstream 12bp
chr7 71177039 71177039 1 + C A HNSC 71177035 + 71177015 71177055 41 ATGAACAAGGGCACGGGACGCTGCCTGGAGGTGGAGAACCG ATGAACAAGGGCACGGGACGCTGCATGGAGGTGGAGAACCG < 41bp 0.390754817821205 0.767242868288235 0.176624 0.47948763 prediction 0.534485736576469 Functional Gain - GALNT17 ENSG00000185274 CDS Human protein_coding chr7:71177035 chr7:71177039 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_105391 0 0 0 0 1 GALNT17 chr7:71177003 3'AG 71177003 Downstream 37bp
chr22 29837559 29837559 1 + C G HNSC 29837555 + 29837535 29837575 41 TATGACCTTGGATGCCGACACAGCCAACAACTTCCTCCTCA TATGACCTTGGATGCCGACACAGCGAACAACTTCCTCCTCA < 41bp 0.551312418649885 0.818550595059998 0.09239033 0.41052195 prediction 0.534476352820227 Functional Gain - RFPL1 ENSG00000128250 CDS Human protein_coding chr22:29837555 chr22:29837559 synonymous SNV . 0 25 hm5C_associated_SNPs_105393 0 0 0 0 1 RFPL1 chr22:29837531 3'AG 29837531 Downstream 29bp
chr1 15793996 15793996 1 + T G SKCM 15793994 + 15793974 15794014 41 TACTACCACAAGCCCTCCGTCTTCACGCGGGTCTCCAATTA TACTACCACAAGCCCTCCGTCTGCACGCGGGTCTCCAATTA < 41bp 0.444741268155939 0.767236844765515 0.15711254 0.11406705 prediction 0.534473689531029 Functional Gain - CELA2A ENSG00000142615 CDS Human protein_coding chr1:15793994 chr1:15793996 nonsynonymous SNV 0.181 4 23 hm5C_associated_SNPs_105394 0 0 0 0 1 CELA2A chr1:15794033 5'GT 15794033 Upstream 38bp
chr7 142829225 142829225 1 + C G LUAD 142829221 + 142829201 142829241 41 TTCTCCAGCATGCGCTTGCTCCAGCTCCTGTTCAGGGCCAG TTCTCCAGCATGCGCTTGCTCCAGGTCCTGTTCAGGGCCAG < 41bp 0.529526968685604 0.796756912849184 0.52036464 0.8840209 prediction 0.534459888327161 Functional Gain - PIP ENSG00000159763 CDS Human protein_coding chr7:142829221 chr7:142829225 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_105396 0 0 0 0 1 PIP chr7:142829304 5'GT 142829304 Upstream 80bp
chr20 44571836 44571836 1 + C A OV 44571832 + 44571812 44571852 41 GTTGCCCAGCAACTGTGAACCAGTCGTGTCACCTTCCATGT GTTGCCCAGCAACTGTGAACCAGTAGTGTCACCTTCCATGT < 41bp 0.355829498158391 0.76720122908953 0.15749973 0.15561005 prediction 0.53440245817906 Functional Gain - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44571832 chr20:44571836 synonymous SNV . 0 25 hm5C_associated_SNPs_105399 0 0 1 0 1 PCIF1 chr20:44571883 5'GT 44571883 Upstream 48bp
chr11 123489427 123489427 1 + T C UCEC 123489425 + 123489405 123489445 41 GTGCTGCTGGTCATCCTTAACATGATGCTCTTCTACAAACT GTGCTGCTGGTCATCCTTAACACGATGCTCTTCTACAAACT < 41bp 0.537468102188976 0.804656481260612 0.06803596 0.051885843 prediction 0.534376758143272 Functional Gain - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123489425 chr11:123489427 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_105400 0 0 0 0 2 GRAMD1B chr11:123489401 3'AG 123489401 Downstream 27bp
chr11 123489427 123489427 1 + T C UCEC 123489425 + 123489405 123489445 41 GTGCTGCTGGTCATCCTTAACATGATGCTCTTCTACAAACT GTGCTGCTGGTCATCCTTAACACGATGCTCTTCTACAAACT < 41bp 0.537468102188976 0.804656481260612 0.06803596 0.051885843 prediction 0.534376758143272 Functional Gain - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123489425 chr11:123489427 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_105400 0 0 0 0 2 GRAMD1B chr11:123489508 5'GT 123489508 Upstream 82bp
chr19 54416252 54416252 1 + C A LUSC 54416248 + 54416228 54416268 41 CCGAGGTCAAGATGGCCCTGCACGCCGGCCTCTGGCGAGTC CCGAGGTCAAGATGGCCCTGCACGACGGCCTCTGGCGAGTC < 41bp 0.360268496655102 0.767174021787681 0.06338978 0.12141499 prediction 0.534348043575362 Functional Gain - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54416248 chr19:54416252 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_105402 0 0 0 0 1 CACNG7 chr19:54416281 5'GT 54416281 Upstream 30bp
chr22 42043068 42043068 1 + C G UCEC 42043064 + 42043044 42043084 41 TACAGGCGGTTTGCTTCTGCCTAGCGATACCAAGAGGTCTC TACAGGCGGTTTGCTTCTGCCTAGGGATACCAAGAGGTCTC < 41bp 0.504778209310859 0.771949831199214 0.0052987635 0.030353963 prediction 0.534343243776708 Functional Gain - XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42043064 chr22:42043068 nonsynonymous SNV 0.728 4 25 hm5C_associated_SNPs_105403 0 0 1 0 1 XRCC6 chr22:42043086 5'GT 42043086 Upstream 19bp
chr2 233245981 233245981 1 + C G rs548731032 233245980 + 233245960 233246000 41 GGGCTGGCCCCTGGCAAGGCCCGGGACAGGAAGGCCTACAC GGGCTGGCCCCTGGCAAGGCCGGGGACAGGAAGGCCTACAC < 41bp 0.578839024445287 0.846008211199404 0.4594517 0.89145464 prediction 0.534338373508232 Functional Gain - ALPP ENSG00000163283 CDS Human protein_coding chr2:233245980 chr2:233245981 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_105404 0 0 0 0 2 ALPP chr2:233245961 3'AG 233245961 Downstream 21bp
chr2 233245981 233245981 1 + C G rs548731032 233245980 + 233245960 233246000 41 GGGCTGGCCCCTGGCAAGGCCCGGGACAGGAAGGCCTACAC GGGCTGGCCCCTGGCAAGGCCGGGGACAGGAAGGCCTACAC < 41bp 0.578839024445287 0.846008211199404 0.4594517 0.89145464 prediction 0.534338373508232 Functional Gain - ALPP ENSG00000163283 CDS Human protein_coding chr2:233245980 chr2:233245981 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_105404 0 0 0 0 2 ALPP chr2:233246077 5'GT 233246077 Upstream 97bp
chr1 2433793 2433793 1 + C G rs566042621 2433792 + 2433772 2433812 41 CGATGTGGTGCCCCCCGGGCCCGGACCTGCTCCGGAAGCCC CGATGTGGTGCCCCCCGGGCCGGGACCTGCTCCGGAAGCCC < 41bp 0.561013142669433 0.828181312894928 0.20203215 0.45180386 prediction 0.534336340450989 Functional Gain - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2433792 chr1:2433793 synonymous SNV . 0 22 hm5C_associated_SNPs_105405 0 0 0 0 1 PLCH2 chr1:2433848 5'GT 2433848 Upstream 56bp
chrX 15794942 15794942 1 + T A SKCM 15794938 + 15794918 15794958 41 CTGACTACCCCACCCCTCTCCGAGTCTGTCACCTGGATCAT CTGACTACCCCACCCCTCTCCGAGACTGTCACCTGGATCAT < 41bp 0.441753025415345 0.767167511411169 0.85779345 0.86573803 prediction 0.534335022822339 Functional Gain - CA5B ENSG00000169239 CDS Human protein_coding chrX:15794938 chrX:15794942 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_105406 0 0 1 0 1 CA5B chrX:15794992 5'GT 15794992 Upstream 51bp
chr16 14755875 14755875 1 + C A LUSC 14755871 + 14755851 14755891 41 CTACCTTTCATCCACACCATCTGCCCTCTGCAAGAAGACAG CTACCTTTCATCCACACCATCTGCACTCTGCAAGAAGACAG < 41bp 0.33652236979827 0.767158600380114 0.09487286 0.110673875 prediction 0.534317200760229 Functional Gain - BFAR ENSG00000103429 CDS Human protein_coding chr16:14755871 chr16:14755875 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_105407 0 0 1 0 1 BFAR chr16:14755922 5'GT 14755922 Upstream 48bp
chr10 105138066 105138066 1 + T C COAD 105138064 + 105138044 105138084 41 AGTCTTACCAAAAAGGAACACATGAAAGGGAATGAGACCAT AGTCTTACCAAAAAGGAACACACGAAAGGGAATGAGACCAT < 41bp 0.485344644142288 0.767135789908687 0.24928737 0.12766105 prediction 0.534271579817375 Functional Gain - TAF5 ENSG00000148835 CDS Human protein_coding chr10:105138064 chr10:105138066 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_105412 0 0 1 0 1 TAF5 chr10:105137992 3'AG 105137992 Downstream 75bp
chr19 45540703 45540703 1 + C A HNSC 45540699 + 45540679 45540719 41 GTCAGCCCTGCTGCCAGACCCTGACTTCTTCTCTGGCACCG GTCAGCCCTGCTGCCAGACCCTGAATTCTTCTCTGGCACCG < 41bp 0.643178933927653 0.910308549748425 0.056697518 0.16284183 prediction 0.534259231641543 Functional Gain - RELB ENSG00000104856 CDS Human protein_coding chr19:45540699 chr19:45540703 nonsynonymous SNV 0.420 2 25 hm5C_associated_SNPs_105413 0 0 0 0 1 RELB chr19:45540663 3'AG 45540663 Downstream 41bp
chr1 205240255 205240255 1 + C A HNSC 205240251 + 205240231 205240271 41 CTCTCTCCCTCCGCCAGGTACGAGCGGCTGGAGGAGCAGCT CTCTCTCCCTCCGCCAGGTACGAGAGGCTGGAGGAGCAGCT < 41bp 0.366139341345271 0.767099971278053 0.8903644 0.91354 prediction 0.534199942556105 Functional Gain - TMCC2 ENSG00000133069 CDS Human protein_coding chr1:205240251 chr1:205240255 synonymous SNV . 0 25 hm5C_associated_SNPs_105415 0 0 1 0 1 TMCC2 chr1:205240248 3'AG 205240248 Downstream 8bp
chr4 70152499 70152499 1 + T A rs41292341 70152495 + 70152475 70152515 41 GGAGGAATTTGTACAGAGCTCTGGTGAAAATGGTGTTGTGG GGAGGAATTTGTACAGAGCTCTGGAGAAAATGGTGTTGTGG < 41bp 0.569148933960611 0.836246033984067 0.47912866 0.7555219 prediction 0.534194200046914 Functional Gain - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70152495 chr4:70152499 synonymous SNV . 0 25 hm5C_associated_SNPs_105416 0 0 0 0 1 UGT2B28 chr4:70152470 3'AG 70152470 Downstream 30bp
chr19 55333103 55333103 1 + C A CESC 55333099 + 55333079 55333119 41 AGCGTGACCTTGTCCTGTAGCTCCCGGAGCTCCTATGACAT AGCGTGACCTTGTCCTGTAGCTCCAGGAGCTCCTATGACAT < 41bp 0.34467529523222 0.767066244401588 0.05000171 0.9228438 prediction 0.534132488803176 Functional Gain - KIR3DL1 ENSG00000167633 CDS Human protein_coding chr19:55333099 chr19:55333103 synonymous SNV . 0 25 hm5C_associated_SNPs_105420 0 0 0 0 1 KIR3DL1 chr19:55333020 3'AG 55333020 Downstream 84bp
chr12 111342496 111342496 1 + C A MESO 111342492 + 111342472 111342512 41 GAGATCCCGCCACCCTTCATCAACCCTTTCTGGGGTGGCTC GAGATCCCGCCACCCTTCATCAACACTTTCTGGGGTGGCTC < 41bp 0.348732917390228 0.76704972717524 0.31867337 0.43787786 prediction 0.53409945435048 Functional Gain - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111342492 chr12:111342496 nonsynonymous SNV 0.794 3 25 hm5C_associated_SNPs_105423 0 0 0 0 1 CCDC63 chr12:111342595 5'GT 111342595 Upstream 100bp
chr10 81371626 81371626 1 + C A UCEC 81371622 + 81371602 81371642 41 CCTCAACCTCATCTTGATGGCAGCCTCTGGTGCTGTGTGCG CCTCAACCTCATCTTGATGGCAGCATCTGGTGCTGTGTGCG < 41bp 0.376922810663613 0.767048276307403 0.15720335 0.20429623 prediction 0.534096552614806 Functional Gain - SFTPA1 ENSG00000122852 CDS Human protein_coding chr10:81371622 chr10:81371626 synonymous SNV . 0 25 hm5C_associated_SNPs_105424 0 0 0 0 1 SFTPA1 chr10:81371559 3'AG 81371559 Downstream 68bp
chr19 55047064 55047064 1 + C A LGG 55047060 + 55047040 55047080 41 CTGTGGTTGTTTCAGTCACTCCCGCTATGAGTGGTCGGCTC CTGTGGTTGTTTCAGTCACTCCCGATATGAGTGGTCGGCTC < 41bp 0.372410670719848 0.767018778069915 0.25534457 0.2209926 prediction 0.534037556139831 Functional Gain - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55047060 chr19:55047064 synonymous SNV . 0 25 hm5C_associated_SNPs_105426 0 0 0 0 1 KIR3DX1 chr19:55047110 5'GT 55047110 Upstream 47bp
chr16 29853106 29853106 1 + C A LUSC 29853102 + 29853082 29853122 41 AACAAGACCCGTGTGGTCAGCTACCGCGTGCCCCACAACGC AACAAGACCCGTGTGGTCAGCTACAGCGTGCCCCACAACGC < 41bp 0.338079099885459 0.767017668177977 0.086977005 0.20888373 prediction 0.534035336355953 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29853102 chr16:29853106 nonsynonymous SNV 0.837 3 25 hm5C_associated_SNPs_105428 0 0 1 0 1 MVP chr16:29853161 5'GT 29853161 Upstream 56bp
chr6 30619145 30619145 1 + T G rs35201959 30619143 + 30619123 30619163 41 TTTTACAGCTGACCCGCCACCCTGAGAACTGGACCCTGCAA TTTTACAGCTGACCCGCCACCCGGAGAACTGGACCCTGCAA < 41bp 0.524498895610464 0.791508389284591 0.18472657 0.93299717 prediction 0.534018987348254 Functional Gain - C6orf136 ENSG00000204564 CDS Human protein_coding chr6:30619143 chr6:30619145 stoploss . 0 23 hm5C_associated_SNPs_105430 0 0 1 0 1 C6orf136 chr6:30619243 5'GT 30619243 Upstream 99bp
chr19 14143218 14143218 1 + T G BRCA 14143215 + 14143195 14143235 41 CAGGCAGCGCCGGGCCACTGCAGTGCTACGGAGTTGGACCC CAGGCAGCGCCGGGCCACTGCAGGGCTACGGAGTTGGACCC < 41bp 0.647830419430615 0.914759836629369 0.4048918 0.93766046 prediction 0.533858834397507 Functional Gain - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14143215 chr19:14143218 nonsynonymous SNV 0.913 3 24 hm5C_associated_SNPs_105437 0 0 0 0 2 IL27RA chr19:14143198 3'AG 14143198 Downstream 21bp
chr19 14143218 14143218 1 + T G BRCA 14143215 + 14143195 14143235 41 CAGGCAGCGCCGGGCCACTGCAGTGCTACGGAGTTGGACCC CAGGCAGCGCCGGGCCACTGCAGGGCTACGGAGTTGGACCC < 41bp 0.647830419430615 0.914759836629369 0.4048918 0.93766046 prediction 0.533858834397507 Functional Gain - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14143215 chr19:14143218 nonsynonymous SNV 0.913 3 24 hm5C_associated_SNPs_105437 0 0 0 0 2 IL27RA chr19:14143315 5'GT 14143315 Upstream 98bp
chr14 94697003 94697003 1 + T G SKCM 94697000 + 94696980 94697020 41 GACCATTCTGCAGGACGAATCAGTGTCAATTCATGCATATA GACCATTCTGCAGGACGAATCAGGGTCAATTCATGCATATA < 41bp 0.375599210849965 0.76691500981098 0.014497608 0.93050754 prediction 0.533830019621959 Functional Gain - PPP4R4 ENSG00000119698 CDS Human protein_coding chr14:94697000 chr14:94697003 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_105440 0 0 0 0 2 PPP4R4 chr14:94696924 3'AG 94696924 Downstream 80bp
chr14 94697003 94697003 1 + T G SKCM 94697000 + 94696980 94697020 41 GACCATTCTGCAGGACGAATCAGTGTCAATTCATGCATATA GACCATTCTGCAGGACGAATCAGGGTCAATTCATGCATATA < 41bp 0.375599210849965 0.76691500981098 0.014497608 0.93050754 prediction 0.533830019621959 Functional Gain - PPP4R4 ENSG00000119698 CDS Human protein_coding chr14:94697000 chr14:94697003 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_105440 0 0 0 0 2 PPP4R4 chr14:94697071 5'GT 94697071 Upstream 69bp
chr9 131909727 131909727 1 + C A KIRC 131909723 + 131909703 131909743 41 TCGGGAGCCTGCTGCCCATCCATCCTGTCACGTCGGGCTAG TCGGGAGCCTGCTGCCCATCCATCATGTCACGTCGGGCTAG < 41bp 0.389529515549496 0.766907412525927 0.15820125 0.10442713 prediction 0.533814825051855 Functional Gain - PTPA ENSG00000119383 CDS Human protein_coding chr9:131909723 chr9:131909727 nonsynonymous SNV 0.862 4 25 hm5C_associated_SNPs_105442 0 0 1 0 1 PTPA chr9:131909666 3'AG 131909666 Downstream 62bp
chr12 7310150 7310150 1 + C A UCEC 7310146 + 7310126 7310166 41 GGCTTCCTGGTGCTCATGGTCGTCCTGGGCCTGGTGCGCAT GGCTTCCTGGTGCTCATGGTCGTCATGGGCCTGGTGCGCAT < 41bp 0.347387556755805 0.766894798356014 0.15205318 0.27618372 prediction 0.533789596712028 Functional Gain - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7310146 chr12:7310150 nonsynonymous SNV 0.986 3 25 hm5C_associated_SNPs_105443 0 0 1 0 1 CLSTN3 chr12:7310085 3'AG 7310085 Downstream 66bp
chr9 140036576 140036576 1 + C G LUAD 140036575 + 140036555 140036595 41 CCCGTGCTGGGGCTGACCACCCGCATGTCCATCTACTCGGA CCCGTGCTGGGGCTGACCACCGGCATGTCCATCTACTCGGA < 41bp 0.539433270524132 0.806326127918095 0.027179927 0.1327202 prediction 0.533785714787927 Functional Gain - GRIN1 ENSG00000176884 CDS Human protein_coding chr9:140036575 chr9:140036576 nonsynonymous SNV 0.979 4 22 hm5C_associated_SNPs_105444 0 0 0 0 1 GRIN1 chr9:140036599 5'GT 140036599 Upstream 24bp
chr15 25448290 25448290 1 + T G rs530741018 25448288 + 25448268 25448308 41 TGCTGAAGCTCAGGCCCTTCCTTGTGCCCTAGTCTCCTGCA TGCTGAAGCTCAGGCCCTTCCTGGTGCCCTAGTCTCCTGCA < 41bp 0.440537761726672 0.766879223069792 0.06520793 0.3687212 prediction 0.533758446139584 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25448288 chr15:25448290 . . 0 23 hm5C_associated_SNPs_105446 0 0 0 0 1 SNHG14 chr15:25448317 5'GT 25448317 Upstream 28bp
chr1 24782721 24782721 1 + T C STAD 24782719 + 24782699 24782739 41 CTTGACTACCCCATCTTCTACGTGATGTTCGTGTGCATGGT CTTGACTACCCCATCTTCTACGCGATGTTCGTGTGCATGGT < 41bp 0.53759666633059 0.804463362934494 0.13841894 0.157163 prediction 0.533733393207809 Functional Gain - NIPAL3 ENSG00000001461 CDS Human protein_coding chr1:24782719 chr1:24782721 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_105447 0 0 1 0 1 NIPAL3 chr1:24782763 5'GT 24782763 Upstream 43bp
chr6 27222804 27222804 1 + C A SARC 27222800 + 27222780 27222820 41 GGCATGTGCTAAGTGTAACACAGGCTTTAGGATCCTCAGAA GGCATGTGCTAAGTGTAACACAGGATTTAGGATCCTCAGAA < 41bp 0.646523772628659 0.913372932235232 0.28511333 0.46505916 prediction 0.533698319213147 Functional Gain - PRSS16 ENSG00000112812 CDS Human protein_coding chr6:27222800 chr6:27222804 nonsynonymous SNV 0.053 0 25 hm5C_associated_SNPs_105448 0 0 1 0 1 PRSS16 chr6:27222765 3'AG 27222765 Downstream 40bp
chr17 38508212 38508212 1 + T A LUSC 38508208 + 38508188 38508228 41 AAGAAGGAGGTGCCCAAGCCCGAGTGCTCTGAGAGCTACAC AAGAAGGAGGTGCCCAAGCCCGAGAGCTCTGAGAGCTACAC < 41bp 0.575298510904999 0.84213697494443 0.62908727 0.85244805 prediction 0.533676928078863 Functional Gain - RARA ENSG00000131759 CDS Human protein_coding chr17:38508208 chr17:38508212 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_105449 0 0 1 0 1 RARA chr17:38508162 3'AG 38508162 Downstream 51bp
chr12 54675243 54675243 1 + T C UCEC 54675241 + 54675221 54675261 41 TTTGAAACAACTGATGAGAGCCTGAGGAGCCATTTTGAGCA TTTGAAACAACTGATGAGAGCCCGAGGAGCCATTTTGAGCA < 41bp 0.524383163117182 0.791202486745078 0.36798185 0.2774541 prediction 0.533638647255791 Functional Gain - HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675241 chr12:54675243 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_105451 0 0 0 0 2 HNRNPA1 chr12:54675170 3'AG 54675170 Downstream 74bp
chr12 54675243 54675243 1 + T C UCEC 54675241 + 54675221 54675261 41 TTTGAAACAACTGATGAGAGCCTGAGGAGCCATTTTGAGCA TTTGAAACAACTGATGAGAGCCCGAGGAGCCATTTTGAGCA < 41bp 0.524383163117182 0.791202486745078 0.36798185 0.2774541 prediction 0.533638647255791 Functional Gain - HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675241 chr12:54675243 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_105451 0 0 0 0 2 HNRNPA1 chr12:54675286 5'GT 54675286 Upstream 44bp
chr5 9546628 9546628 1 + C G rs2271220 9546627 + 9546607 9546647 41 GACGTGGCGCTCCCTCTCTGCCGGCCTCGGCTTCAGGTACG GACGTGGCGCTCCCTCTCTGCGGGCCTCGGCTTCAGGTACG < 41bp 0.547978125348994 0.814795406561579 0.592283 0.7071668 prediction 0.53363456242517 Functional Gain - SNHG18 ENSG00000250786 ncRNA_exonic Human lincRNA chr5:9546627 chr5:9546628 . . 0 22 hm5C_associated_SNPs_105453 0 0 0 0 1 SNHG18 chr5:9546642 5'GT 9546642 Upstream 15bp
chr19 45851943 45851943 1 + T C COAD 45851941 + 45851921 45851961 41 AAGAAGCCACAGACCTTCTCCATGATGCCCTGCAGATCCGG AAGAAGCCACAGACCTTCTCCACGATGCCCTGCAGATCCGG < 41bp 0.516930492608519 0.783736156537784 0.115980566 0.25601083 prediction 0.533611327858529 Functional Gain - KLC3 ENSG00000104892 CDS Human protein_coding chr19:45851941 chr19:45851943 synonymous SNV . 0 23 hm5C_associated_SNPs_105455 0 0 0 0 2 KLC3 chr19:45851904 3'AG 45851904 Downstream 40bp
chr19 45851943 45851943 1 + T C COAD 45851941 + 45851921 45851961 41 AAGAAGCCACAGACCTTCTCCATGATGCCCTGCAGATCCGG AAGAAGCCACAGACCTTCTCCACGATGCCCTGCAGATCCGG < 41bp 0.516930492608519 0.783736156537784 0.115980566 0.25601083 prediction 0.533611327858529 Functional Gain - KLC3 ENSG00000104892 CDS Human protein_coding chr19:45851941 chr19:45851943 synonymous SNV . 0 23 hm5C_associated_SNPs_105455 0 0 0 0 2 KLC3 chr19:45851991 5'GT 45851991 Upstream 49bp
chr10 72511899 72511899 1 + T G BLCA 72511897 + 72511877 72511917 41 CGGCGCAGACGAGACCACCACATGGTGCAGCGACACCTGTG CGGCGCAGACGAGACCACCACAGGGTGCAGCGACACCTGTG < 41bp 0.405769256850094 0.766741024170562 0.4379372 0.90303934 prediction 0.533482048341123 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72511897 chr10:72511899 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_105461 0 0 0 0 2 ADAMTS14 chr10:72511851 3'AG 72511851 Downstream 49bp
chr10 72511899 72511899 1 + T G BLCA 72511897 + 72511877 72511917 41 CGGCGCAGACGAGACCACCACATGGTGCAGCGACACCTGTG CGGCGCAGACGAGACCACCACAGGGTGCAGCGACACCTGTG < 41bp 0.405769256850094 0.766741024170562 0.4379372 0.90303934 prediction 0.533482048341123 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72511897 chr10:72511899 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_105461 0 0 0 0 2 ADAMTS14 chr10:72511983 5'GT 72511983 Upstream 85bp
chr15 101597188 101597188 1 + C G ESCA 101597187 + 101597167 101597207 41 TCCGCCCGGTTCTGGGGCAGCCGGAGGAAGTGCAGTTCCGG TCCGCCCGGTTCTGGGGCAGCGGGAGGAAGTGCAGTTCCGG < 41bp 0.460056731621791 0.766721540766319 0.89858377 0.90007967 prediction 0.533443081532638 Functional Gain - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101597187 chr15:101597188 nonsynonymous SNV 0.952 2 22 hm5C_associated_SNPs_105462 0 0 0 0 1 LRRK1 chr15:101597255 5'GT 101597255 Upstream 68bp
chrX 84502615 84502615 1 + C G LUSC 84502611 + 84502591 84502631 41 GGTGGAAGTCTTGGATTGCACACGCCAGACTCTAGAATGGC GGTGGAAGTCTTGGATTGCACACGGCAGACTCTAGAATGGC < 41bp 0.499470713463034 0.766702856936546 0.13061267 0.16407192 prediction 0.533405713873093 Functional Gain - ZNF711 ENSG00000147180 CDS Human protein_coding chrX:84502611 chrX:84502615 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_105464 0 0 1 0 2 ZNF711 chrX:84502553 3'AG 84502553 Downstream 63bp
chrX 84502615 84502615 1 + C G LUSC 84502611 + 84502591 84502631 41 GGTGGAAGTCTTGGATTGCACACGCCAGACTCTAGAATGGC GGTGGAAGTCTTGGATTGCACACGGCAGACTCTAGAATGGC < 41bp 0.499470713463034 0.766702856936546 0.13061267 0.16407192 prediction 0.533405713873093 Functional Gain - ZNF711 ENSG00000147180 CDS Human protein_coding chrX:84502611 chrX:84502615 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_105464 0 0 1 0 2 ZNF711 chrX:84502657 5'GT 84502657 Upstream 43bp
chr12 57921371 57921371 1 + C G BLCA 57921367 + 57921347 57921387 41 ACTACTGACCCGGGGGCCTCCTCTCTGGGCAAGGCCCCCTC ACTACTGACCCGGGGGCCTCCTCTGTGGGCAAGGCCCCCTC < 41bp 0.521884037089519 0.78856667205123 0.1751647 0.27874684 prediction 0.533365269923422 Functional Gain - MBD6 ENSG00000166987 CDS Human protein_coding chr12:57921367 chr12:57921371 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_105470 0 0 1 0 2 MBD6 chr12:57921290 3'AG 57921290 Downstream 82bp
chr12 57921371 57921371 1 + C G BLCA 57921367 + 57921347 57921387 41 ACTACTGACCCGGGGGCCTCCTCTCTGGGCAAGGCCCCCTC ACTACTGACCCGGGGGCCTCCTCTGTGGGCAAGGCCCCCTC < 41bp 0.521884037089519 0.78856667205123 0.1751647 0.27874684 prediction 0.533365269923422 Functional Gain - MBD6 ENSG00000166987 CDS Human protein_coding chr12:57921367 chr12:57921371 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_105470 0 0 1 0 2 MBD6 chr12:57921443 5'GT 57921443 Upstream 73bp
chr11 44931287 44931287 1 + T C LIHC 44931285 + 44931265 44931305 41 GCCTGCCTGCTGGCCATCGGCATCTGGGTCATGGTGGACCC GCCTGCCTGCTGGCCATCGGCACCTGGGTCATGGTGGACCC < 41bp 0.504394229221888 0.771055538978186 0.72471154 0.6156175 prediction 0.533322619512596 Functional Gain - TSPAN18 ENSG00000157570 CDS Human protein_coding chr11:44931285 chr11:44931287 nonsynonymous SNV 0.980 4 23 hm5C_associated_SNPs_105473 0 0 0 0 1 TSPAN18 chr11:44931256 3'AG 44931256 Downstream 32bp
chr22 37266473 37266473 1 + C G BRCA 37266469 + 37266449 37266489 41 CCACACAGAGCCTGCTCAGCCTGCCGGTCTGGGTGCTGATG CCACACAGAGCCTGCTCAGCCTGCGGGTCTGGGTGCTGATG < 41bp 0.540221662797883 0.806878531535086 0.026877224 0.03976068 prediction 0.533313737474406 Functional Gain - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37266469 chr22:37266473 nonsynonymous SNV 0.305 4 25 hm5C_associated_SNPs_105474 0 0 0 0 1 NCF4 chr22:37266457 3'AG 37266457 Downstream 17bp
chr17 40837398 40837398 1 + C A PAAD 40837394 + 40837374 40837414 41 CGCCCAGGGCGACTACGTGACGCTCGAGCTGGAGGGGGCAC CGCCCAGGGCGACTACGTGACGCTAGAGCTGGAGGGGGCAC < 41bp 0.35197150429091 0.7666369572804 0.13338742 0.26704067 prediction 0.533273914560801 Functional Gain - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40837394 chr17:40837398 synonymous SNV . 0 25 hm5C_associated_SNPs_105475 0 0 0 0 1 CNTNAP1 chr17:40837438 5'GT 40837438 Upstream 41bp
chr10 6186952 6186952 1 + C G rs561120271 6186948 + 6186928 6186968 41 CGGGCCGGCCCCGCGGGGAGCGCCCCCGGCGCGATGCCCTT CGGGCCGGCCCCGCGGGGAGCGCCGCCGGCGCGATGCCCTT < 41bp 0.481017664206041 0.766631140439246 0.35865515 0.48350525 prediction 0.533262280878491 Functional Gain - PFKFB3 ENSG00000170525 UTR5 Human protein_coding chr10:6186948 chr10:6186952 . . 0 25 hm5C_associated_SNPs_105476 0 0 0 0 1 PFKFB3 chr10:6186976 5'GT 6186976 Upstream 25bp
chr5 154179587 154179587 1 + C T LGG 154179586 + 154179566 154179606 41 GAAGAAGAGGCCTCGGCCATCCCCAGCACGGCCCAAGGTGG GAAGAAGAGGCCTCGGCCATCTCCAGCACGGCCCAAGGTGG < 41bp 0.508833955058177 0.77543745465734 0.24973342 0.9333942 prediction 0.533206999198326 Functional Gain - LARP1 ENSG00000155506 CDS Human protein_coding chr5:154179586 chr5:154179587 synonymous SNV . 0 22 hm5C_associated_SNPs_105478 0 0 1 0 1 LARP1 chr5:154179602 5'GT 154179602 Upstream 16bp
chr1 148932895 148932895 1 + C A UCEC 148932891 + 148932871 148932911 41 AGACGGGTGAGGTACAGGCTCAGTCTGCGGCCAAGACTCCG AGACGGGTGAGGTACAGGCTCAGTATGCGGCCAAGACTCCG < 41bp 0.375632233090572 0.766578398391032 0.18571737 0.17346591 prediction 0.533156796782064 Functional Gain - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932891 chr1:148932895 . . 0 25 hm5C_associated_SNPs_105482 0 0 0 1 1 LOC645166 chr1:148932920 5'GT 148932920 Upstream 26bp
chr4 3441258 3441258 1 + C G BRCA 3441257 + 3441237 3441277 41 TCTTGTAACTGGCTCGGCGCCCGGGCGGGATGGTGGCATAG TCTTGTAACTGGCTCGGCGCCGGGGCGGGATGGTGGCATAG < 41bp 0.513470789424416 0.780046688335298 0.71742177 0.898254 prediction 0.533151797821764 Functional Gain - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3441257 chr4:3441258 synonymous SNV . 0 22 hm5C_associated_SNPs_105483 0 0 0 0 1 RGS12 chr4:3441182 3'AG 3441182 Downstream 77bp
chr2 26676226 26676226 1 + C A LUAD 26676222 + 26676202 26676242 41 TCAGGCGAGCATGGAGAAGGCGAGCATGGAGGAGACAAGCA TCAGGCGAGCATGGAGAAGGCGAGAATGGAGGAGACAAGCA < 41bp 0.643951777475718 0.910519908314928 0.4135463 0.4151861 prediction 0.53313626167842 Functional Gain - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26676222 chr2:26676226 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_105486 0 0 0 0 1 DRC1 chr2:26676188 3'AG 26676188 Downstream 39bp
chr20 36997655 36997655 1 + C G rs2232613 36997654 + 36997634 36997674 41 CCCAGTTAGCCAGGCTCTACCCCAACATGAACCTGGAACTC CCCAGTTAGCCAGGCTCTACCGCAACATGAACCTGGAACTC < 41bp 0.582187362519669 0.848754849021321 0.09445089 0.33944303 prediction 0.533134973003304 Functional Gain - LBP ENSG00000129988 CDS Human protein_coding chr20:36997654 chr20:36997655 nonsynonymous SNV 0.971 4 22 hm5C_associated_SNPs_105488 0 1 0 0 1 LBP chr20:36997639 3'AG 36997639 Downstream 17bp
chr11 64940209 64940209 1 + C G LUSC 64940208 + 64940188 64940228 41 ACTCGGGACCGGCGCCCCCACCATGGTGGGGTTCAGAGGGT ACTCGGGACCGGCGCCCCCACGATGGTGGGGTTCAGAGGGT < 41bp 0.579128393386491 0.845682299733516 0.26215792 0.4818747 prediction 0.533107812694051 Functional Gain - SPDYC ENSG00000204710 CDS Human protein_coding chr11:64940208 chr11:64940209 nonsynonymous SNV 0.316 4 22 hm5C_associated_SNPs_105490 0 0 0 0 1 SPDYC chr11:64940155 3'AG 64940155 Downstream 55bp
chr1 46740259 46740259 1 + T C UCEC 46740257 + 46740237 46740277 41 AGCAAAGCTGGGGGCTGTGGCCTCAATCTCATTGGGGCTAA AGCAAAGCTGGGGGCTGTGGCCCCAATCTCATTGGGGCTAA < 41bp 0.480943737489579 0.766542455957652 0.824342 0.55681264 prediction 0.533084911915304 Functional Gain - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46740257 chr1:46740259 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_105491 0 0 1 0 1 RAD54L chr1:46740210 3'AG 46740210 Downstream 50bp
chr21 48069603 48069603 1 + C G rs148075005 48069602 + 48069582 48069622 41 GGTGGAGGATGTGGTGCTGCCCGAGAAGGTGGACGTGCTGG GGTGGAGGATGTGGTGCTGCCGGAGAAGGTGGACGTGCTGG < 41bp 0.561641829336595 0.828167107815838 0.07319301 0.79769576 prediction 0.533050556958485 Functional Gain - PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48069602 chr21:48069603 synonymous SNV . 0 22 hm5C_associated_SNPs_105493 0 0 1 0 1 PRMT2 chr21:48069651 5'GT 48069651 Upstream 49bp
chr16 56865830 56865830 1 + C A rs145146218 56865826 + 56865806 56865846 41 AGGAACAATACAGATCCCTACAAGCGGGCCGTGTACTGTAT AGGAACAATACAGATCCCTACAAGAGGGCCGTGTACTGTAT < 41bp 0.348620952204497 0.766509825195897 0.19367489 0.1805357 prediction 0.533019650391794 Functional Gain - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56865826 chr16:56865830 synonymous SNV . 0 25 hm5C_associated_SNPs_105495 0 0 1 0 2 NUP93 chr16:56865754 3'AG 56865754 Downstream 77bp
chr16 56865830 56865830 1 + C A rs145146218 56865826 + 56865806 56865846 41 AGGAACAATACAGATCCCTACAAGCGGGCCGTGTACTGTAT AGGAACAATACAGATCCCTACAAGAGGGCCGTGTACTGTAT < 41bp 0.348620952204497 0.766509825195897 0.19367489 0.1805357 prediction 0.533019650391794 Functional Gain - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56865826 chr16:56865830 synonymous SNV . 0 25 hm5C_associated_SNPs_105495 0 0 1 0 2 NUP93 chr16:56865919 5'GT 56865919 Upstream 90bp
chr17 9764496 9764496 1 + T A UCEC 9764492 + 9764472 9764512 41 TGTTGTACCCTGGGGTTTCGCCCGTGCACACCTGGAGAACA TGTTGTACCCTGGGGTTTCGCCCGAGCACACCTGGAGAACA < 41bp 0.450043113815999 0.766501595651274 0.34235635 0.53514874 prediction 0.533003191302548 Functional Gain - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9764492 chr17:9764496 synonymous SNV . 0 25 hm5C_associated_SNPs_105497 0 0 0 0 1 GLP2R chr17:9764456 3'AG 9764456 Downstream 41bp
chr11 14280924 14280924 1 + T G SKCM 14280921 + 14280901 14280941 41 CCCGGGAGAGGTATGTGAAGCAGTTCCCGGAGGACGGCTCC CCCGGGAGAGGTATGTGAAGCAGGTCCCGGAGGACGGCTCC < 41bp 0.405917310914704 0.766488491374728 0.044769973 0.25716984 prediction 0.532976982749456 Functional Gain - SPON1 ENSG00000152268 ncRNA_exonic Human other chr11:14280921 chr11:14280924 . 1.000 1 24 hm5C_associated_SNPs_105498 0 0 0 0 2 SPON1 chr11:14280826 3'AG 14280826 Downstream 99bp
chr11 14280924 14280924 1 + T G SKCM 14280921 + 14280901 14280941 41 CCCGGGAGAGGTATGTGAAGCAGTTCCCGGAGGACGGCTCC CCCGGGAGAGGTATGTGAAGCAGGTCCCGGAGGACGGCTCC < 41bp 0.405917310914704 0.766488491374728 0.044769973 0.25716984 prediction 0.532976982749456 Functional Gain - SPON1 ENSG00000152268 ncRNA_exonic Human other chr11:14280921 chr11:14280924 . 1.000 1 24 hm5C_associated_SNPs_105498 0 0 0 0 2 SPON1 chr11:14280996 5'GT 14280996 Upstream 73bp
chr6 106547387 106547387 1 + T C STAD 106547385 + 106547365 106547405 41 GTCGGGACTTTGCAGAAAGGCTTCACTACCCTTATCCCGGA GTCGGGACTTTGCAGAAAGGCTCCACTACCCTTATCCCGGA < 41bp 0.559928715444857 0.826409424610913 0.07973075 0.4219479 prediction 0.532961418332111 Functional Gain - PRDM1 ENSG00000057657 CDS Human protein_coding chr6:106547385 chr6:106547387 synonymous SNV . 0 23 hm5C_associated_SNPs_105500 0 0 0 0 1 PRDM1 chr6:106547427 5'GT 106547427 Upstream 41bp
chr3 122821308 122821308 1 + C G rs377598783 122821307 + 122821287 122821327 41 AGATGAAAGTTGACCTGAGCCCGAAGGACAAAAAGGTTGAA AGATGAAAGTTGACCTGAGCCGGAAGGACAAAAAGGTTGAA < 41bp 0.46271686459264 0.766475427509799 0.3096363 0.6593 prediction 0.532950855019599 Functional Gain - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122821307 chr3:122821308 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_105501 0 0 1 1 2 PDIA5 chr3:122821258 3'AG 122821258 Downstream 51bp
chr3 122821308 122821308 1 + C G rs377598783 122821307 + 122821287 122821327 41 AGATGAAAGTTGACCTGAGCCCGAAGGACAAAAAGGTTGAA AGATGAAAGTTGACCTGAGCCGGAAGGACAAAAAGGTTGAA < 41bp 0.46271686459264 0.766475427509799 0.3096363 0.6593 prediction 0.532950855019599 Functional Gain - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122821307 chr3:122821308 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_105501 0 0 1 1 2 PDIA5 chr3:122821341 5'GT 122821341 Upstream 34bp
chr16 23700057 23700057 1 + T A GBM 23700053 + 23700033 23700073 41 AAGTGGGTGGACTATTCGGACAAGTACGGCCTTGGTAGGTT AAGTGGGTGGACTATTCGGACAAGAACGGCCTTGGTAGGTT < 41bp 0.45329323767192 0.766471078612649 0.3691654 0.3828365 prediction 0.532942157225298 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700053 chr16:23700057 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_105503 0 0 1 0 2 PLK1 chr16:23699989 3'AG 23699989 Downstream 69bp
chr16 23700057 23700057 1 + T A GBM 23700053 + 23700033 23700073 41 AAGTGGGTGGACTATTCGGACAAGTACGGCCTTGGTAGGTT AAGTGGGTGGACTATTCGGACAAGAACGGCCTTGGTAGGTT < 41bp 0.45329323767192 0.766471078612649 0.3691654 0.3828365 prediction 0.532942157225298 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700053 chr16:23700057 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_105503 0 0 1 0 2 PLK1 chr16:23700066 5'GT 23700066 Upstream 10bp
chr22 37325485 37325485 1 + C A CESC 37325481 + 37325461 37325501 41 AGGGACCTGCAGATCAGCACCGACCAGGACCACTTCCTGCT AGGGACCTGCAGATCAGCACCGACAAGGACCACTTCCTGCT < 41bp 0.341516028599404 0.766432472084804 0.031115651 0.045246363 prediction 0.532864944169608 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37325481 chr22:37325485 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_105506 0 0 0 0 1 CSF2RB chr22:37325444 3'AG 37325444 Downstream 42bp
chr7 79082460 79082460 1 + T G LIHC 79082457 + 79082437 79082477 41 AGCAGCAGCTCCTCCGACACCAATTTGCTGCCGCTCTCATA AGCAGCAGCTCCTCCGACACCAAGTTGCTGCCGCTCTCATA < 41bp 0.4057112343607 0.766431468382138 0.12642589 0.29958904 prediction 0.532862936764277 Functional Gain - MAGI2 ENSG00000187391 CDS Human protein_coding chr7:79082457 chr7:79082460 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_105507 0 0 0 0 1 MAGI2 chr7:79082507 5'GT 79082507 Upstream 48bp
chr10 28966845 28966845 1 + T A OV 28966841 + 28966821 28966861 41 GCGTCAATGGATCGCCACTCCAGCTACATCTTCATCTGGCT GCGTCAATGGATCGCCACTCCAGCAACATCTTCATCTGGCT < 41bp 0.559752927620518 0.826176740241792 0.012589604 0.010827452 prediction 0.532847625242548 Functional Gain - BAMBI ENSG00000095739 CDS Human protein_coding chr10:28966841 chr10:28966845 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105510 0 0 1 0 1 BAMBI chr10:28966902 5'GT 28966902 Upstream 58bp
chr19 35741319 35741319 1 + C T UCEC 35741318 + 35741298 35741338 41 ACCTACCAGATGACCTCGACCCCCACGCAACCCATCGTCAT ACCTACCAGATGACCTCGACCTCCACGCAACCCATCGTCAT < 41bp 0.500117862591681 0.766535216259101 0.017440915 0.8877196 prediction 0.53283470733484 Functional Gain - LSR ENSG00000105699 CDS Human protein_coding chr19:35741318 chr19:35741319 nonsynonymous SNV 0.007 0 22 hm5C_associated_SNPs_105512 0 0 1 0 1 LSR chr19:35741228 3'AG 35741228 Downstream 92bp
chr1 77747969 77747969 1 + C A UCEC 77747965 + 77747945 77747985 41 CGCCGCAGCCCGGGAGCCTCCCCGCTTGCGCCCCAAGGCAC CGCCGCAGCCCGGGAGCCTCCCCGATTGCGCCCCAAGGCAC < 41bp 0.628001774743014 0.894412776944408 0.08554435 0.069508225 prediction 0.532822004402788 Functional Gain - AK5 ENSG00000154027 UTR5 Human protein_coding chr1:77747965 chr1:77747969 . . 0 25 hm5C_associated_SNPs_105514 0 0 0 0 1 AK5 chr1:77748058 5'GT 77748058 Upstream 90bp
chr11 113813798 113813798 1 + C A LUAD 113813794 + 113813774 113813814 41 TGGACCTGGGGAGCTTCTACCTGCCACCCAACTGCCGAGCC TGGACCTGGGGAGCTTCTACCTGCAACCCAACTGCCGAGCC < 41bp 0.660853135221251 0.927263958237199 0.26762122 0.32432175 prediction 0.532821646031896 Functional Gain - HTR3B ENSG00000149305 CDS Human protein_coding chr11:113813794 chr11:113813798 nonsynonymous SNV 0.171 5 25 hm5C_associated_SNPs_105515 0 0 0 0 1 HTR3B chr11:113813704 3'AG 113813704 Downstream 95bp
chr3 14485310 14485310 1 + C G rs41284011 14485306 + 14485286 14485326 41 CGACTTTGTGCTCTCTGTGGCTGGCGGCTTCGTGGGCTTGG CGACTTTGTGCTCTCTGTGGCTGGGGGCTTCGTGGGCTTGG < 41bp 0.524853088053836 0.791198850134349 0.47860837 0.8922757 prediction 0.532691524161026 Functional Gain - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14485306 chr3:14485310 synonymous SNV . 0 25 hm5C_associated_SNPs_105521 0 0 1 0 1 SLC6A6 chr3:14485371 5'GT 14485371 Upstream 62bp
chr12 113534585 113534585 1 + C G LUAD 113534584 + 113534564 113534604 41 CACTATCGGCACGTCCAACACCACGGGCGAGTCGGACACCG CACTATCGGCACGTCCAACACGACGGGCGAGTCGGACACCG < 41bp 0.45619703232236 0.766341286659289 0.14713207 0.3404265 prediction 0.532682573318579 Functional Gain - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113534584 chr12:113534585 synonymous SNV . 0 22 hm5C_associated_SNPs_105522 0 0 0 0 1 DTX1 chr12:113534520 3'AG 113534520 Downstream 66bp
chr2 176982255 176982255 1 + C A LUSC 176982251 + 176982231 176982271 41 GGCCTTCCCGAAGAGAGGAGCTGCCTGGCTGAGGTCTCCGT GGCCTTCCCGAAGAGAGGAGCTGCATGGCTGAGGTCTCCGT < 41bp 0.370196772018486 0.766294555579462 0.2311869 0.30360037 prediction 0.532589111158924 Functional Gain - HOXD10 ENSG00000128710 CDS Human protein_coding chr2:176982251 chr2:176982255 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105525 0 0 1 0 1 HOXD10 chr2:176982306 5'GT 176982306 Upstream 52bp
chr6 7403056 7403056 1 + T G UCEC 7403054 + 7403034 7403074 41 ATTTTTCTTATTCAAGATTTCGTCATGGCTATTGTAAAGGA ATTTTTCTTATTCAAGATTTCGGCATGGCTATTGTAAAGGA < 41bp 0.469390232268048 0.766277650721327 0.07754189 0.33500886 prediction 0.532555301442654 Functional Gain - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7403054 chr6:7403056 synonymous SNV . 0 23 hm5C_associated_SNPs_105529 0 0 1 0 1 RIOK1 chr6:7403050 3'AG 7403050 Downstream 7bp
chr19 2245452 2245452 1 + C A KIRP 2245448 + 2245428 2245468 41 CTCCATCCTGTCCGCAGGGCCCGGCGAGCAGCCAAGGAGGC CTCCATCCTGTCCGCAGGGCCCGGAGAGCAGCCAAGGAGGC < 41bp 0.392190227303545 0.766273477126813 0.50751126 0.54557985 prediction 0.532546954253626 Functional Gain - SF3A2 ENSG00000104897 CDS Human protein_coding chr19:2245448 chr19:2245452 synonymous SNV . 0 25 hm5C_associated_SNPs_105530 0 0 1 0 1 SF3A2 chr19:2245445 3'AG 2245445 Downstream 8bp
chr1 169094257 169094257 1 + T G KIRP 169094255 + 169094235 169094275 41 GATTCAGCCCAGAGGGATGACATGATTTTTGAAGATTGTGG GATTCAGCCCAGAGGGATGACAGGATTTTTGAAGATTGTGG < 41bp 0.59227489147532 0.858541841958445 0.039584607 0.11555505 prediction 0.532533900966251 Functional Gain - ATP1B1 ENSG00000143153 CDS Human protein_coding chr1:169094255 chr1:169094257 nonsynonymous SNV 0.990 1 23 hm5C_associated_SNPs_105531 0 0 1 0 1 ATP1B1 chr1:169094277 5'GT 169094277 Upstream 21bp
chr3 159706940 159706940 1 + C A UCEC 159706936 + 159706916 159706956 41 CGCCCTGTGTCCCTGCAGTGCCGGCTCAGCATGTGTCCAGC CGCCCTGTGTCCCTGCAGTGCCGGATCAGCATGTGTCCAGC < 41bp 0.626917042171303 0.893181819766593 0.14613333 0.36673653 prediction 0.53252955519058 Functional Gain - IL12A ENSG00000168811 CDS Human protein_coding chr3:159706936 chr3:159706940 nonsynonymous SNV 0.014 0 25 hm5C_associated_SNPs_105532 0 0 0 0 1 IL12A chr3:159706961 5'GT 159706961 Upstream 22bp
chr19 36277855 36277855 1 + C G rs199669285 36277854 + 36277834 36277874 41 CCCCAACACCAGCTCTCAGCCCCGGCCGGAGCCTGCGCCCC CCCCAACACCAGCTCTCAGCCGCGGCCGGAGCCTGCGCCCC < 41bp 0.574329809515484 0.840560614057476 0.10533208 0.49752286 prediction 0.532461609083984 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36277854 chr19:36277855 nonsynonymous SNV 0.511 0 22 hm5C_associated_SNPs_105535 0 0 1 0 1 ARHGAP33 chr19:36277798 3'AG 36277798 Downstream 58bp
chr8 144295154 144295154 1 + C A rs61747644 144295150 + 144295130 144295170 41 AGCGTCCGGCGAGATGAAGGCGCTCGGGGCTGTCCTGCTTG AGCGTCCGGCGAGATGAAGGCGCTAGGGGCTGTCCTGCTTG < 41bp 0.391850559469454 0.766179288282808 0.2942505 0.7276577 prediction 0.532358576565615 Functional Gain - GPIHBP1 ENSG00000182851 CDS Human other chr8:144295150 chr8:144295154 synonymous SNV . 0 25 hm5C_associated_SNPs_105542 0 0 0 0 1 GPIHBP1 chr8:144295194 5'GT 144295194 Upstream 41bp
chr6 31540548 31540548 1 + C A LUAD 31540544 + 31540524 31540564 41 CACCACCTGAACGTCTCTTCCTCCCAAGGGTGTGTGGCACC CACCACCTGAACGTCTCTTCCTCCAAAGGGTGTGTGGCACC < 41bp 0.396923224552322 0.766141593406788 0.20186764 0.9709858 prediction 0.532283186813576 Functional Gain - LTA ENSG00000226979 CDS Human protein_coding chr6:31540544 chr6:31540548 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_105545 0 0 0 0 2 LTA chr6:31540511 3'AG 31540511 Downstream 38bp
chr6 31540548 31540548 1 + C A LUAD 31540544 + 31540524 31540564 41 CACCACCTGAACGTCTCTTCCTCCCAAGGGTGTGTGGCACC CACCACCTGAACGTCTCTTCCTCCAAAGGGTGTGTGGCACC < 41bp 0.396923224552322 0.766141593406788 0.20186764 0.9709858 prediction 0.532283186813576 Functional Gain - LTA ENSG00000226979 CDS Human protein_coding chr6:31540544 chr6:31540548 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_105545 0 0 0 0 2 LTA chr6:31540618 5'GT 31540618 Upstream 71bp
chr3 41266103 41266103 1 - G C ACC 41266104 - 41266084 41266124 41 TAGTGGCACCAGAATGGATTCCAGAGTCCAGGTAAGACTGT TAGTGGCACCAGAATGGATTCGAGAGTCCAGGTAAGACTGT < 41bp 0.561018360860774 0.827146678478385 0.68668604 0.8969135 prediction 0.532256635235221 Functional Gain - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41266104 chr3:41266103 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_105546 10 0 0 0 1 CTNNB1 chr3:41266094 5'GT 41266094 Upstream 10bp
chr2 113832335 113832335 1 + C G LUAD 113832334 + 113832314 113832354 41 CTTCCTAACAGAGGCTTGGCCCGCACCAAGGTCCCCATTTT CTTCCTAACAGAGGCTTGGCCGGCACCAAGGTCCCCATTTT < 41bp 0.583146022061792 0.849259381456986 0.14229026 0.5633862 prediction 0.532226718790388 Functional Gain - IL1F10 ENSG00000136697 CDS Human protein_coding chr2:113832334 chr2:113832335 nonsynonymous SNV 0.968 1 22 hm5C_associated_SNPs_105549 0 0 0 0 2 IL1F10 chr2:113832300 3'AG 113832300 Downstream 36bp
chr2 113832335 113832335 1 + C G LUAD 113832334 + 113832314 113832354 41 CTTCCTAACAGAGGCTTGGCCCGCACCAAGGTCCCCATTTT CTTCCTAACAGAGGCTTGGCCGGCACCAAGGTCCCCATTTT < 41bp 0.583146022061792 0.849259381456986 0.14229026 0.5633862 prediction 0.532226718790388 Functional Gain - IL1F10 ENSG00000136697 CDS Human protein_coding chr2:113832334 chr2:113832335 nonsynonymous SNV 0.968 1 22 hm5C_associated_SNPs_105549 0 0 0 0 2 IL1F10 chr2:113832427 5'GT 113832427 Upstream 93bp
chr7 123264689 123264689 1 + C A STAD 123264685 + 123264665 123264705 41 AACATAACACTAGCCTAGACCAGCCCTGTGTCAAGCGATGG AACATAACACTAGCCTAGACCAGCACTGTGTCAAGCGATGG < 41bp 0.349047408826601 0.766083671912564 0.04978189 0.099742085 prediction 0.532167343825127 Functional Gain - ASB15 ENSG00000146809 CDS Human protein_coding chr7:123264685 chr7:123264689 nonsynonymous SNV 0.994 3 25 hm5C_associated_SNPs_105551 0 0 0 0 1 ASB15 chr7:123264623 3'AG 123264623 Downstream 67bp
chr2 26502945 26502945 1 + C A HNSC 26502941 + 26502921 26502961 41 AAACTAAAACCTGCATTCATCAAGCCCTACGGCACAGTGAC AAACTAAAACCTGCATTCATCAAGACCTACGGCACAGTGAC < 41bp 0.357573133739398 0.766065110043802 0.58022785 0.7624316 prediction 0.532130220087604 Functional Gain - HADHB ENSG00000138029 CDS Human protein_coding chr2:26502941 chr2:26502945 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_105555 0 0 1 0 2 HADHB chr2:26502862 3'AG 26502862 Downstream 84bp
chr2 26502945 26502945 1 + C A HNSC 26502941 + 26502921 26502961 41 AAACTAAAACCTGCATTCATCAAGCCCTACGGCACAGTGAC AAACTAAAACCTGCATTCATCAAGACCTACGGCACAGTGAC < 41bp 0.357573133739398 0.766065110043802 0.58022785 0.7624316 prediction 0.532130220087604 Functional Gain - HADHB ENSG00000138029 CDS Human protein_coding chr2:26502941 chr2:26502945 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_105555 0 0 1 0 2 HADHB chr2:26502983 5'GT 26502983 Upstream 39bp
chr20 45644876 45644876 1 + T A OV 45644872 + 45644852 45644892 41 CCTGGCCAGAGTGGATTCCTCAGCTATGGCTCCAGCTTCAG CCTGGCCAGAGTGGATTCCTCAGCAATGGCTCCAGCTTCAG < 41bp 0.598319460767695 0.864339373465851 0.14620274 0.18646592 prediction 0.532039825396312 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45644872 chr20:45644876 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_105560 0 0 0 0 2 EYA2 chr20:45644820 3'AG 45644820 Downstream 57bp
chr20 45644876 45644876 1 + T A OV 45644872 + 45644852 45644892 41 CCTGGCCAGAGTGGATTCCTCAGCTATGGCTCCAGCTTCAG CCTGGCCAGAGTGGATTCCTCAGCAATGGCTCCAGCTTCAG < 41bp 0.598319460767695 0.864339373465851 0.14620274 0.18646592 prediction 0.532039825396312 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45644872 chr20:45644876 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_105560 0 0 0 0 2 EYA2 chr20:45644936 5'GT 45644936 Upstream 61bp
chr17 26861777 26861777 1 + C A BLCA 26861773 + 26861753 26861793 41 GAGAGAAAAGCTGGGCTCCCCACTCCTGGGCTGTCCGCCCC GAGAGAAAAGCTGGGCTCCCCACTACTGGGCTGTCCGCCCC < 41bp 0.34900757775331 0.765992757361412 0.24837357 0.28825474 prediction 0.531985514722825 Functional Gain - FOXN1 ENSG00000109101 CDS Human protein_coding chr17:26861773 chr17:26861777 synonymous SNV . 0 25 hm5C_associated_SNPs_105562 0 0 0 0 1 FOXN1 chr17:26861725 3'AG 26861725 Downstream 53bp
chrX 153420204 153420204 1 + C G BLCA 153420200 + 153420180 153420220 41 TCTGCTACCTCCAAGTGTGGCTGGCCATCCGAGCGGTAAGC TCTGCTACCTCCAAGTGTGGCTGGGCATCCGAGCGGTAAGC < 41bp 0.483395781013575 0.76597302105143 0.11213541 0.16358218 prediction 0.53194604210286 Functional Gain - OPN1LW ENSG00000102076 CDS Human protein_coding chrX:153420200 chrX:153420204 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_105563 0 0 0 0 1 OPN1LW chrX:153420214 5'GT 153420214 Upstream 11bp
chr3 142405191 142405191 1 + C A rs41265481 142405187 + 142405167 142405207 41 TAAAGGTGGGGAAGATGGACCTGCCATTGCCATTGACCTTT TAAAGGTGGGGAAGATGGACCTGCAATTGCCATTGACCTTT < 41bp 0.347709293315724 0.76592448000654 0.06440091 0.20759878 prediction 0.53184896001308 Functional Gain - PLS1 ENSG00000120756 CDS Human protein_coding chr3:142405187 chr3:142405191 synonymous SNV . 0 25 hm5C_associated_SNPs_105568 0 0 0 0 2 PLS1 chr3:142405126 3'AG 142405126 Downstream 66bp
chr3 142405191 142405191 1 + C A rs41265481 142405187 + 142405167 142405207 41 TAAAGGTGGGGAAGATGGACCTGCCATTGCCATTGACCTTT TAAAGGTGGGGAAGATGGACCTGCAATTGCCATTGACCTTT < 41bp 0.347709293315724 0.76592448000654 0.06440091 0.20759878 prediction 0.53184896001308 Functional Gain - PLS1 ENSG00000120756 CDS Human protein_coding chr3:142405187 chr3:142405191 synonymous SNV . 0 25 hm5C_associated_SNPs_105568 0 0 0 0 2 PLS1 chr3:142405218 5'GT 142405218 Upstream 28bp
chr12 31754781 31754781 1 + C A rs145576859 31754777 + 31754757 31754797 41 AGTGATCTGCACTAGAGCTTCAGGCAGCTAAGGTAGGCTTT AGTGATCTGCACTAGAGCTTCAGGAAGCTAAGGTAGGCTTT < 41bp 0.409146844317932 0.765919003213351 0.8501844 0.8789398 prediction 0.531838006426702 Functional Gain - DENND5B-AS1 ENSG00000255867 ncRNA_exonic Human antisense chr12:31754777 chr12:31754781 . . 0 25 hm5C_associated_SNPs_105570 0 0 0 0 1 DENND5B-AS1 chr12:31754788 5'GT 31754788 Upstream 8bp
chr11 66330572 66330572 1 + C A OV 66330568 + 66330548 66330588 41 AAGCAGGCCGAGTACTGCATCCGCCGTATGGTGCCCTACAA AAGCAGGCCGAGTACTGCATCCGCAGTATGGTGCCCTACAA < 41bp 0.382437500610327 0.765916989551454 0.1683906 0.2086317 prediction 0.531833979102907 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66330568 chr11:66330572 unknown 0.829 2 25 hm5C_associated_SNPs_105571 0 0 0 0 1 ACTN3 chr11:66330506 3'AG 66330506 Downstream 67bp
chr20 29625891 29625891 1 + C G BLCA 29625887 + 29625867 29625907 41 GTACAGAATCGCCCTGAAATCTGGCTATGGAAAATATCTTG GTACAGAATCGCCCTGAAATCTGGGTATGGAAAATATCTTG < 41bp 0.512910976097434 0.778821919902406 0.24666002 0.5965749 prediction 0.531821887609944 Functional Gain - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29625887 chr20:29625891 synonymous SNV . 0 25 hm5C_associated_SNPs_105573 0 0 1 0 2 FRG1BP;FRG1DP chr20:29625873 3'AG 29625873 Downstream 19bp
chr20 29625891 29625891 1 + C G BLCA 29625887 + 29625867 29625907 41 GTACAGAATCGCCCTGAAATCTGGCTATGGAAAATATCTTG GTACAGAATCGCCCTGAAATCTGGGTATGGAAAATATCTTG < 41bp 0.512910976097434 0.778821919902406 0.24666002 0.5965749 prediction 0.531821887609944 Functional Gain - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29625887 chr20:29625891 synonymous SNV . 0 25 hm5C_associated_SNPs_105573 0 0 1 0 2 FRG1BP;FRG1DP chr20:29625984 5'GT 29625984 Upstream 94bp
chr1 155011920 155011920 1 + T G LUAD 155011917 + 155011897 155011937 41 GGGGGACCTCCCCTCACATCCGCTGTGCCAGCCTCCTACTA GGGGGACCTCCCCTCACATCCGCGGTGCCAGCCTCCTACTA < 41bp 0.646565154753111 0.912456328850377 0.12569064 0.5114734 prediction 0.531782348194532 Functional Gain - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155011917 chr1:155011920 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_105577 0 0 0 0 2 DCST1 chr1:155011879 3'AG 155011879 Downstream 42bp
chr1 155011920 155011920 1 + T G LUAD 155011917 + 155011897 155011937 41 GGGGGACCTCCCCTCACATCCGCTGTGCCAGCCTCCTACTA GGGGGACCTCCCCTCACATCCGCGGTGCCAGCCTCCTACTA < 41bp 0.646565154753111 0.912456328850377 0.12569064 0.5114734 prediction 0.531782348194532 Functional Gain - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155011917 chr1:155011920 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_105577 0 0 0 0 2 DCST1 chr1:155012007 5'GT 155012007 Upstream 88bp
chr17 33588006 33588006 1 + T C UCEC 33588004 + 33587984 33588024 41 CCTAAGACCTTTCCAGGTGTCCTGAGATGGTTCTCCAGTTG CCTAAGACCTTTCCAGGTGTCCCGAGATGGTTCTCCAGTTG < 41bp 0.500202647849491 0.766077215837083 0.23267934 0.2092855 prediction 0.531749135975184 Functional Gain - SLFN5 ENSG00000166750 CDS Human protein_coding chr17:33588004 chr17:33588006 synonymous SNV . 0 23 hm5C_associated_SNPs_105578 0 0 0 0 1 SLFN5 chr17:33587990 3'AG 33587990 Downstream 17bp
chr15 29398898 29398898 1 + C A HNSC 29398894 + 29398874 29398914 41 CCATCCTGCCCACGGTGATCCTGGCCAACATGATGAATGGC CCATCCTGCCCACGGTGATCCTGGACAACATGATGAATGGC < 41bp 0.35810285232838 0.765835591683468 0.8289125 0.8267596 prediction 0.531671183366936 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29398894 chr15:29398898 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_105581 0 0 1 0 1 APBA2 chr15:29398810 3'AG 29398810 Downstream 89bp
chr2 71780979 71780979 1 + T G SKCM 71780976 + 71780956 71780996 41 ACCCTGGGGTAACGTGAAACCTGTGGTGGTGCTGTCATCCT ACCCTGGGGTAACGTGAAACCTGGGGTGGTGCTGTCATCCT < 41bp 0.59385338052602 0.859685603190479 0.31178468 0.7699622 prediction 0.531664445328918 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71780976 chr2:71780979 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_105582 0 0 0 0 1 DYSF chr2:71781061 5'GT 71781061 Upstream 83bp
chr2 242501798 242501798 1 + C A UCEC 242501794 + 242501774 242501814 41 GAGATGATCCGGCCCAGCGTCTACCGCAACGTGGCGCGTCA GAGATGATCCGGCCCAGCGTCTACAGCAACGTGGCGCGTCA < 41bp 0.341507153919417 0.765828498164231 0.332013 0.9201411 prediction 0.531656996328463 Functional Gain - BOK ENSG00000176720 CDS Human protein_coding chr2:242501794 chr2:242501798 nonsynonymous SNV 0.959 3 25 hm5C_associated_SNPs_105583 0 0 1 0 2 BOK chr2:242501763 3'AG 242501763 Downstream 36bp
chr2 242501798 242501798 1 + C A UCEC 242501794 + 242501774 242501814 41 GAGATGATCCGGCCCAGCGTCTACCGCAACGTGGCGCGTCA GAGATGATCCGGCCCAGCGTCTACAGCAACGTGGCGCGTCA < 41bp 0.341507153919417 0.765828498164231 0.332013 0.9201411 prediction 0.531656996328463 Functional Gain - BOK ENSG00000176720 CDS Human protein_coding chr2:242501794 chr2:242501798 nonsynonymous SNV 0.959 3 25 hm5C_associated_SNPs_105583 0 0 1 0 2 BOK chr2:242501891 5'GT 242501891 Upstream 94bp
chr1 159779906 159779906 1 + C A THCA 159779902 + 159779882 159779922 41 AGGTTCTCAAGTCTTGTTCACTCCCGCCAGCAACTGGCTGG AGGTTCTCAAGTCTTGTTCACTCCAGCCAGCAACTGGCTGG < 41bp 0.363220719983986 0.765826130189005 0.084778875 0.9055776 prediction 0.531652260378009 Functional Gain - FCRL6 ENSG00000181036 CDS Human protein_coding chr1:159779902 chr1:159779906 synonymous SNV . 0 25 hm5C_associated_SNPs_105584 0 0 0 0 1 FCRL6 chr1:159779884 3'AG 159779884 Downstream 23bp
chr19 36394703 36394703 1 + C G BLCA 36394699 + 36394679 36394719 41 TGTTCCGGATGTGGGTCCCTCTCTCTGCCGCTCCTGGCAGG TGTTCCGGATGTGGGTCCCTCTCTGTGCCGCTCCTGGCAGG < 41bp 0.536098038864112 0.801922825585024 0.62884593 0.42250782 prediction 0.531649573441823 Functional Gain - HCST ENSG00000126264 CDS Human protein_coding chr19:36394699 chr19:36394703 nonsynonymous SNV 0.572 2 25 hm5C_associated_SNPs_105585 0 0 0 0 1 HCST chr19:36394674 3'AG 36394674 Downstream 30bp
chr12 51449970 51449970 1 + T G KIRC 51449967 + 51449947 51449987 41 AGCAATACATGATATCTTGGCTCTGAGAGAGTGTTTCTCTA AGCAATACATGATATCTTGGCTCGGAGAGAGTGTTTCTCTA < 41bp 0.388750491270889 0.765818071484068 0.051724374 0.11347622 prediction 0.531636142968136 Functional Gain - LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51449967 chr12:51449970 nonsynonymous SNV 0.147 3 24 hm5C_associated_SNPs_105587 0 0 1 0 2 LETMD1 chr12:51449927 3'AG 51449927 Downstream 44bp
chr12 51449970 51449970 1 + T G KIRC 51449967 + 51449947 51449987 41 AGCAATACATGATATCTTGGCTCTGAGAGAGTGTTTCTCTA AGCAATACATGATATCTTGGCTCGGAGAGAGTGTTTCTCTA < 41bp 0.388750491270889 0.765818071484068 0.051724374 0.11347622 prediction 0.531636142968136 Functional Gain - LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51449967 chr12:51449970 nonsynonymous SNV 0.147 3 24 hm5C_associated_SNPs_105587 0 0 1 0 2 LETMD1 chr12:51450028 5'GT 51450028 Upstream 59bp
chr10 18292181 18292181 1 + T C BLCA 18292179 + 18292159 18292199 41 TTTATAAGCTCCCTAACTGCCTTCATGGGATTATACATTGG TTTATAAGCTCCCTAACTGCCTCCATGGGATTATACATTGG < 41bp 0.460635761680288 0.765811300573287 0.17960823 0.9719417 prediction 0.531622601146574 Functional Gain - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18292179 chr10:18292181 nonsynonymous SNV 0.043 4 23 hm5C_associated_SNPs_105590 0 0 0 0 1 SLC39A12 chr10:18292100 3'AG 18292100 Downstream 82bp
chr10 43606878 43606878 1 + C G LUAD 43606874 + 43606854 43606894 41 CCGACCAGCAGACCTCTAGGCAGGCCCAGGCCCAGCTGCTT CCGACCAGCAGACCTCTAGGCAGGGCCAGGCCCAGCTGCTT < 41bp 0.4680746040462 0.765810560660754 0.41623855 0.8969176 prediction 0.531621121321508 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43606874 chr10:43606878 nonsynonymous SNV 0.175 1 25 hm5C_associated_SNPs_105591 0 0 0 0 1 RET chr10:43606913 5'GT 43606913 Upstream 36bp
chr13 45151258 45151258 1 + T G rs548048576 45151255 + 45151235 45151275 41 GGCGGCTCCTTTCTCCGCGGCGTTGGTGGCCAGACGGGCTG GGCGGCTCCTTTCTCCGCGGCGTGGGTGGCCAGACGGGCTG < 41bp 0.405851512787742 0.765789933490756 0.27885073 0.5143034 prediction 0.531579866981513 Functional Gain - TSC22D1-AS1 ENSG00000102804 UTR5 Human protein_coding chr13:45151255 chr13:45151258 . . 0 24 hm5C_associated_SNPs_105595 0 0 0 0 2 TSC22D1-AS1 chr13:45151178 3'AG 45151178 Downstream 81bp
chr13 45151258 45151258 1 + T G rs548048576 45151255 + 45151235 45151275 41 GGCGGCTCCTTTCTCCGCGGCGTTGGTGGCCAGACGGGCTG GGCGGCTCCTTTCTCCGCGGCGTGGGTGGCCAGACGGGCTG < 41bp 0.405851512787742 0.765789933490756 0.27885073 0.5143034 prediction 0.531579866981513 Functional Gain - TSC22D1-AS1 ENSG00000102804 UTR5 Human protein_coding chr13:45151255 chr13:45151258 . . 0 24 hm5C_associated_SNPs_105595 0 0 0 0 2 TSC22D1-AS1 chr13:45151313 5'GT 45151313 Upstream 56bp
chr18 21739506 21739506 1 + T A rs143434314 21739502 + 21739482 21739522 41 GTGGACCCTTTATTGTCTAACTGATAAGAATCAACAAGGTC GTGGACCCTTTATTGTCTAACTGAAAAGAATCAACAAGGTC < 41bp 0.455714194979088 0.765782651686827 0.099279344 0.09806442 prediction 0.531565303373653 Functional Gain - CABYR ENSG00000154040 CDS Human protein_coding chr18:21739502 chr18:21739506 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_105597 0 0 0 2 1 CABYR chr18:21739436 3'AG 21739436 Downstream 71bp
chr6 44148718 44148718 1 + T C COAD 44148716 + 44148696 44148736 41 GGCCTGGATGCTTGCCGCTGCATGATCAACCTCATGGATGT GGCCTGGATGCTTGCCGCTGCACGATCAACCTCATGGATGT < 41bp 0.498864219314466 0.765770142846253 0.058564365 0.10396686 prediction 0.531540285692506 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44148716 chr6:44148718 nonsynonymous SNV 0.242 5 23 hm5C_associated_SNPs_105599 0 0 0 0 2 CAPN11 chr6:44148670 3'AG 44148670 Downstream 49bp
chr6 44148718 44148718 1 + T C COAD 44148716 + 44148696 44148736 41 GGCCTGGATGCTTGCCGCTGCATGATCAACCTCATGGATGT GGCCTGGATGCTTGCCGCTGCACGATCAACCTCATGGATGT < 41bp 0.498864219314466 0.765770142846253 0.058564365 0.10396686 prediction 0.531540285692506 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44148716 chr6:44148718 nonsynonymous SNV 0.242 5 23 hm5C_associated_SNPs_105599 0 0 0 0 2 CAPN11 chr6:44148734 5'GT 44148734 Upstream 17bp
chr2 74757856 74757856 1 + C G BLCA 74757855 + 74757835 74757875 41 GTGGCTGATCGGCGCAGAGTCCGTGTGAGACTGCTAAGCGG GTGGCTGATCGGCGCAGAGTCGGTGTGAGACTGCTAAGCGG < 41bp 0.572769424824412 0.838536442941863 0.10009354 0.30194044 prediction 0.531534036234903 Functional Gain - HTRA2 ENSG00000115317 CDS Human protein_coding chr2:74757855 chr2:74757856 nonsynonymous SNV 0.968 5 22 hm5C_associated_SNPs_105601 0 0 1 0 1 HTRA2 chr2:74757948 5'GT 74757948 Upstream 93bp
chr17 4837132 4837132 1 - A C rs12940222 4837135 - 4837115 4837155 41 GGGGCGGGCTCTGAGGTGGGCTCTGGGGTGGTCGGGCTTGG GGGGCGGGCTCTGAGGTGGGCTCGGGGGTGGTCGGGCTTGG < 41bp 0.62969655434983 0.895456744206386 0.2732958 0.3314787 prediction 0.531520379713112 Functional Gain - GP1BA ENSG00000185245 CDS Human protein_coding chr17:4837135 chr17:4837132 synonymous SNV . 0 24 hm5C_associated_SNPs_105602 0 0 1 0 1 GP1BA chr17:4837179 3'AG 4837179 Downstream 48bp
chr14 64909059 64909059 1 + C G PRAD 64909058 + 64909038 64909078 41 GCCGGTATTCCGGCCTCTGCCCCCACGTGGTGGTGCTTGTT GCCGGTATTCCGGCCTCTGCCGCCACGTGGTGGTGCTTGTT < 41bp 0.457371511176488 0.765730825783734 0.21671358 0.84266925 prediction 0.531461651567467 Functional Gain - MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64909058 chr14:64909059 nonsynonymous SNV 0.895 4 22 hm5C_associated_SNPs_105606 0 0 1 0 2 MTHFD1 chr14:64908981 3'AG 64908981 Downstream 79bp
chr14 64909059 64909059 1 + C G PRAD 64909058 + 64909038 64909078 41 GCCGGTATTCCGGCCTCTGCCCCCACGTGGTGGTGCTTGTT GCCGGTATTCCGGCCTCTGCCGCCACGTGGTGGTGCTTGTT < 41bp 0.457371511176488 0.765730825783734 0.21671358 0.84266925 prediction 0.531461651567467 Functional Gain - MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64909058 chr14:64909059 nonsynonymous SNV 0.895 4 22 hm5C_associated_SNPs_105606 0 0 1 0 2 MTHFD1 chr14:64909120 5'GT 64909120 Upstream 62bp
chr19 47876076 47876076 1 + C G SKCM 47876072 + 47876052 47876092 41 CTTAGCGTCCAGTCGCCCTTCACCCGCAGCGCCCAGAGCAG CTTAGCGTCCAGTCGCCCTTCACCGGCAGCGCCCAGAGCAG < 41bp 0.484923532696021 0.76571089229861 0.109797746 0.17983967 prediction 0.53142178459722 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47876072 chr19:47876076 nonsynonymous SNV 0.970 4 25 hm5C_associated_SNPs_105608 0 0 0 0 1 DHX34 chr19:47875987 3'AG 47875987 Downstream 90bp
chr15 25492409 25492409 1 + C A rs567785202 25492405 + 25492385 25492425 41 CGCTGAAGCTCGGGCCCTTCCTCGCGCCCTGGTCTCCTGCA CGCTGAAGCTCGGGCCCTTCCTCGAGCCCTGGTCTCCTGCA < 41bp 0.621548823292567 0.887250899056602 0.16231143 0.85053194 prediction 0.531404151528071 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25492405 chr15:25492409 . . 0 25 hm5C_associated_SNPs_105610 0 0 0 0 1 SNHG14 chr15:25492435 5'GT 25492435 Upstream 27bp
chr15 56704567 56704567 1 + T G rs138888960 56704565 + 56704545 56704585 41 CAAAGTGCCACAGAGGTTCGCTTGAATAGAGCTCTAGAAGA CAAAGTGCCACAGAGGTTCGCTGGAATAGAGCTCTAGAAGA < 41bp 0.447058111430754 0.765684383773953 0.02050078 0.11611235 prediction 0.531368767547907 Functional Gain - TEX9 ENSG00000151575 CDS Human protein_coding chr15:56704565 chr15:56704567 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_105612 0 0 1 0 2 TEX9 chr15:56704500 3'AG 56704500 Downstream 68bp
chr15 56704567 56704567 1 + T G rs138888960 56704565 + 56704545 56704585 41 CAAAGTGCCACAGAGGTTCGCTTGAATAGAGCTCTAGAAGA CAAAGTGCCACAGAGGTTCGCTGGAATAGAGCTCTAGAAGA < 41bp 0.447058111430754 0.765684383773953 0.02050078 0.11611235 prediction 0.531368767547907 Functional Gain - TEX9 ENSG00000151575 CDS Human protein_coding chr15:56704565 chr15:56704567 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_105612 0 0 1 0 2 TEX9 chr15:56704634 5'GT 56704634 Upstream 68bp
chr1 154241327 154241327 1 + C A UCEC 154241323 + 154241303 154241343 41 GAAGTGGGGGCCCCATCAATCCGGCCACAGCTGCTGCCTAC GAAGTGGGGGCCCCATCAATCCGGACACAGCTGCTGCCTAC < 41bp 0.642625002535597 0.908251550789409 0.9133182 0.89332396 prediction 0.531253096507624 Functional Gain - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154241323 chr1:154241327 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_105620 0 0 1 0 2 UBAP2L chr1:154241233 3'AG 154241233 Downstream 95bp
chr1 154241327 154241327 1 + C A UCEC 154241323 + 154241303 154241343 41 GAAGTGGGGGCCCCATCAATCCGGCCACAGCTGCTGCCTAC GAAGTGGGGGCCCCATCAATCCGGACACAGCTGCTGCCTAC < 41bp 0.642625002535597 0.908251550789409 0.9133182 0.89332396 prediction 0.531253096507624 Functional Gain - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154241323 chr1:154241327 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_105620 0 0 1 0 2 UBAP2L chr1:154241236 3'AG 154241236 Downstream 92bp
chr1 154296764 154296764 1 + T A LUSC 154296760 + 154296740 154296780 41 ACTGTCCTTCTTTTGCAGTGCTGGTAATGGCTGGTGGTGGG ACTGTCCTTCTTTTGCAGTGCTGGAAATGGCTGGTGGTGGG < 41bp 0.56850208549524 0.834127366323503 0.15103012 0.16852391 prediction 0.531250561656528 Functional Gain - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154296760 chr1:154296764 synonymous SNV . 0 25 hm5C_associated_SNPs_105621 0 0 1 0 1 AQP10 chr1:154296758 3'AG 154296758 Downstream 7bp
chr9 136319591 136319591 1 + T A LIHC 136319587 + 136319567 136319607 41 GGCCAGCTGTGGCCTTGGCACTGCTAGACGCTCGGTGGCCT GGCCAGCTGTGGCCTTGGCACTGCAAGACGCTCGGTGGCCT < 41bp 0.573406031530795 0.839030673031585 0.2016764 0.276411 prediction 0.531249283001581 Functional Gain - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136319587 chr9:136319591 synonymous SNV . 0 25 hm5C_associated_SNPs_105622 0 0 0 0 1 ADAMTS13 chr9:136319537 3'AG 136319537 Downstream 55bp
chr4 4766042 4766042 1 + C G rs557293594 4766041 + 4766021 4766061 41 TCTCCGGGATGTGAGCTGTACCCAGGCCTAACTTACGTCCG TCTCCGGGATGTGAGCTGTACGCAGGCCTAACTTACGTCCG < 41bp 0.474525873897908 0.765615571709025 0.081226826 0.03637728 prediction 0.531231143418051 Functional Gain - LOC101928279 ENSG00000247708;ENSG00000273396 intergenic Human other chr4:4766041 chr4:4766042 . . 0 22 hm5C_associated_SNPs_105625 0 0 0 0 1 LOC101928279 chr4:4765968 3'AG 4765968 Downstream 75bp
chr1 151512898 151512898 1 + C A OV 151512894 + 151512874 151512914 41 TGGACGTGCACCCAGAGGACCAGGCGGCGGTAAGAAAAAGC TGGACGTGCACCCAGAGGACCAGGAGGCGGTAAGAAAAAGC < 41bp 0.469032556030501 0.765596476252481 0.7468848 0.8804102 prediction 0.531192952504963 Functional Gain - TUFT1 ENSG00000143367 CDS Human protein_coding chr1:151512894 chr1:151512898 nonsynonymous SNV 0.156 0 25 hm5C_associated_SNPs_105629 0 0 0 0 1 TUFT1 chr1:151512902 5'GT 151512902 Upstream 5bp
chr9 140777310 140777310 1 - A C LUSC 140777312 - 140777292 140777332 41 GTGAGGACGACCACGAAGTCCATGACGTTCCAGCCGTTCCG GTGAGGACGACCACGAAGTCCAGGACGTTCCAGCCGTTCCG < 41bp 0.610127891678204 0.875713304781475 0.06185171 0.36798695 prediction 0.531170826206543 Functional Gain - CACNA1B ENSG00000148408 CDS Human protein_coding chr9:140777312 chr9:140777310 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_105632 0 0 0 0 1 CACNA1B chr9:140777289 5'GT 140777289 Upstream 22bp
chr12 3129865 3129865 1 + C G HNSC 3129864 + 3129844 3129884 41 CCGGCACCCCCATGGCAGGGCCGCAGCGTGGCCAGCTCCAA CCGGCACCCCCATGGCAGGGCGGCAGCGTGGCCAGCTCCAA < 41bp 0.579311973622567 0.844892232297963 0.25589263 0.48071894 prediction 0.531160517350792 Functional Gain - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3129864 chr12:3129865 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_105633 0 0 1 0 1 TEAD4 chr12:3129939 5'GT 3129939 Upstream 75bp
chr2 27280180 27280180 1 + T C STAD 27280178 + 27280158 27280198 41 CTTTATGTCTTAGCTACACACTTGAATGCAACTACAACACT CTTTATGTCTTAGCTACACACTCGAATGCAACTACAACACT < 41bp 0.53150958210045 0.797026448148935 0.10574561 0.46990594 prediction 0.531033732096971 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27280178 chr2:27280180 synonymous SNV . 0 23 hm5C_associated_SNPs_105637 0 0 1 3 1 AGBL5 chr2:27280171 3'AG 27280171 Downstream 10bp
chr17 16593979 16593979 1 + C G rs185265343 16593978 + 16593958 16593998 41 GGCGAGCTCCACAGAGCTGCCCGGTCGGGCGACGTCCCTGG GGCGAGCTCCACAGAGCTGCCGGGTCGGGCGACGTCCCTGG < 41bp 0.566642298561339 0.832154592046971 0.27233112 0.81413436 prediction 0.531024586971265 Functional Gain - CCDC144A ENSG00000170160;ENSG00000266302 CDS Human other chr17:16593978 chr17:16593979 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_105638 0 0 0 0 1 CCDC144A chr17:16594058 5'GT 16594058 Upstream 80bp
chr20 31021672 31021672 1 + C G BLCA 31021671 + 31021651 31021691 41 CACAATTGAAAGTGTTCACACCGAAAAGCCACAGCCCACTA CACAATTGAAAGTGTTCACACGGAAAAGCCACAGCCCACTA < 41bp 0.456735100234204 0.765504411389283 0.08732656 0.45229912 prediction 0.531008822778565 Functional Gain - ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021671 chr20:31021672 synonymous SNV . 0 22 hm5C_associated_SNPs_105640 0 0 1 0 1 ASXL1 chr20:31021720 5'GT 31021720 Upstream 49bp
chr3 37555294 37555294 1 + T C UCEC 37555292 + 37555272 37555312 41 TCCTCCTTGTGCGCAGTTGACCTGAATGGGGACGGCCTCTC TCCTCCTTGTGCGCAGTTGACCCGAATGGGGACGGCCTCTC < 41bp 0.485184571898512 0.765500071974993 0.18881324 0.18351534 prediction 0.531000143949987 Functional Gain - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37555292 chr3:37555294 nonsynonymous SNV 0.959 4 23 hm5C_associated_SNPs_105641 0 0 0 0 2 ITGA9 chr3:37555254 3'AG 37555254 Downstream 41bp
chr3 37555294 37555294 1 + T C UCEC 37555292 + 37555272 37555312 41 TCCTCCTTGTGCGCAGTTGACCTGAATGGGGACGGCCTCTC TCCTCCTTGTGCGCAGTTGACCCGAATGGGGACGGCCTCTC < 41bp 0.485184571898512 0.765500071974993 0.18881324 0.18351534 prediction 0.531000143949987 Functional Gain - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37555292 chr3:37555294 nonsynonymous SNV 0.959 4 23 hm5C_associated_SNPs_105641 0 0 0 0 2 ITGA9 chr3:37555391 5'GT 37555391 Upstream 98bp
chr10 105201628 105201628 1 + T C UCEC 105201626 + 105201606 105201646 41 AGCGCCCCGGCTGCAGCTGTCTTCAGGCTTCGCTTGGAATG AGCGCCCCGGCTGCAGCTGTCTCCAGGCTTCGCTTGGAATG < 41bp 0.470700602518415 0.765495332037589 0.12622273 0.9128132 prediction 0.530990664075178 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105201626 chr10:105201628 nonsynonymous SNV 0.015 1 23 hm5C_associated_SNPs_105643 0 0 1 0 1 PDCD11 chr10:105201583 3'AG 105201583 Downstream 46bp
chr1 148932802 148932802 1 + C G UCEC 148932801 + 148932781 148932821 41 TGCAGACTGCTGGCCAGACCCCCAAGCTAGCCCGCCAGGCC TGCAGACTGCTGGCCAGACCCGCAAGCTAGCCCGCCAGGCC < 41bp 0.571155682541577 0.836649114355579 0.37574393 0.4333483 prediction 0.530986863628002 Functional Gain - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932801 chr1:148932802 . . 0 22 hm5C_associated_SNPs_105645 0 0 0 0 1 LOC645166 chr1:148932786 3'AG 148932786 Downstream 17bp
chr4 79697870 79697870 1 + C A rs149914551 79697866 + 79697846 79697886 41 AGGTCACCCTGGAAGAGTCGCTGGCCGAAGGTACGGGCGCC AGGTCACCCTGGAAGAGTCGCTGGACGAAGGTACGGGCGCC < 41bp 0.635633250412544 0.901122897223695 0.17804691 0.5385068 prediction 0.530979293622302 Functional Gain - BMP2K ENSG00000138756 CDS Human protein_coding chr4:79697866 chr4:79697870 nonsynonymous SNV 0.993 3 25 hm5C_associated_SNPs_105647 0 1 1 0 1 BMP2K chr4:79697875 5'GT 79697875 Upstream 6bp
chr1 227920679 227920679 1 - G T TGCT 227920683 - 227920663 227920703 41 ACTGGGTCAATGGCTTCAACCTGGCCAACATGTGGCGCTTC ACTGGGTCAATGGCTTCAACCTGGACAACATGTGGCGCTTC < 41bp 0.650082730705447 0.915562324194449 0.29871798 0.20832524 prediction 0.530959186978004 Functional Gain - JMJD4 ENSG00000081692 CDS Human protein_coding chr1:227920683 chr1:227920679 nonsynonymous SNV 0.957 0 25 hm5C_associated_SNPs_105649 0 0 0 0 3 JMJD4 chr1:227920582 5'GT 227920582 Upstream 98bp
chr1 227920679 227920679 1 - G T TGCT 227920683 - 227920663 227920703 41 ACTGGGTCAATGGCTTCAACCTGGCCAACATGTGGCGCTTC ACTGGGTCAATGGCTTCAACCTGGACAACATGTGGCGCTTC < 41bp 0.650082730705447 0.915562324194449 0.29871798 0.20832524 prediction 0.530959186978004 Functional Gain - JMJD4 ENSG00000081692 CDS Human protein_coding chr1:227920683 chr1:227920679 nonsynonymous SNV 0.957 0 25 hm5C_associated_SNPs_105649 0 0 0 0 3 JMJD4 chr1:227920630 5'GT 227920630 Upstream 50bp
chr1 227920679 227920679 1 - G T TGCT 227920683 - 227920663 227920703 41 ACTGGGTCAATGGCTTCAACCTGGCCAACATGTGGCGCTTC ACTGGGTCAATGGCTTCAACCTGGACAACATGTGGCGCTTC < 41bp 0.650082730705447 0.915562324194449 0.29871798 0.20832524 prediction 0.530959186978004 Functional Gain - JMJD4 ENSG00000081692 CDS Human protein_coding chr1:227920683 chr1:227920679 nonsynonymous SNV 0.957 0 25 hm5C_associated_SNPs_105649 0 0 0 0 3 JMJD4 chr1:227920728 3'AG 227920728 Downstream 50bp
chr8 102661654 102661654 1 + T G COAD 102661652 + 102661632 102661672 41 TCTCTTCCAGTGCTCTTGTACGTGAGGAAGGAGACTGACGA TCTCTTCCAGTGCTCTTGTACGGGAGGAAGGAGACTGACGA < 41bp 0.60818669368346 0.873665456800415 0.34027368 0.8520424 prediction 0.530957526233911 Functional Gain - GRHL2 ENSG00000083307 CDS Human protein_coding chr8:102661652 chr8:102661654 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_105650 0 0 0 0 2 GRHL2 chr8:102661642 3'AG 102661642 Downstream 13bp
chr8 102661654 102661654 1 + T G COAD 102661652 + 102661632 102661672 41 TCTCTTCCAGTGCTCTTGTACGTGAGGAAGGAGACTGACGA TCTCTTCCAGTGCTCTTGTACGGGAGGAAGGAGACTGACGA < 41bp 0.60818669368346 0.873665456800415 0.34027368 0.8520424 prediction 0.530957526233911 Functional Gain - GRHL2 ENSG00000083307 CDS Human protein_coding chr8:102661652 chr8:102661654 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_105650 0 0 0 0 2 GRHL2 chr8:102661727 5'GT 102661727 Upstream 74bp
chr11 93819316 93819316 1 + C G SARC 93819315 + 93819295 93819335 41 GACTCCCTGGCCCTGTTTCCCCACATGGCCACAACAGCATT GACTCCCTGGCCCTGTTTCCCGACATGGCCACAACAGCATT < 41bp 0.463700442651172 0.765467152959565 0.24739432 0.23877156 prediction 0.530934305919129 Functional Gain - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93819315 chr11:93819316 nonsynonymous SNV 0.523 5 22 hm5C_associated_SNPs_105652 0 0 0 0 1 HEPHL1 chr11:93819355 5'GT 93819355 Upstream 40bp
chr8 70517133 70517133 1 + C A UCEC 70517129 + 70517109 70517149 41 GGGTCAAAGAACTATGCCAGCAGGCCAGGTACCAGACAGCC GGGTCAAAGAACTATGCCAGCAGGACAGGTACCAGACAGCC < 41bp 0.362722378534694 0.765444710590569 0.3146993 0.39325476 prediction 0.530889421181139 Functional Gain - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70517129 chr8:70517133 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_105654 0 0 0 0 2 SULF1 chr8:70517038 3'AG 70517038 Downstream 96bp
chr8 70517133 70517133 1 + C A UCEC 70517129 + 70517109 70517149 41 GGGTCAAAGAACTATGCCAGCAGGCCAGGTACCAGACAGCC GGGTCAAAGAACTATGCCAGCAGGACAGGTACCAGACAGCC < 41bp 0.362722378534694 0.765444710590569 0.3146993 0.39325476 prediction 0.530889421181139 Functional Gain - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70517129 chr8:70517133 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_105654 0 0 0 0 2 SULF1 chr8:70517167 5'GT 70517167 Upstream 35bp
chr16 2255787 2255787 1 + C A rs574093429 2255783 + 2255763 2255803 41 AGTGGCGCCCGCGCGTGACTCCCCCCTGCCGGCTGCGGAGG AGTGGCGCCCGCGCGTGACTCCCCACTGCCGGCTGCGGAGG < 41bp 0.442978401727753 0.76541598322476 0.16496441 0.11700824 prediction 0.530831966449519 Functional Gain - MLST8 ENSG00000167965 UTR5 Human protein_coding chr16:2255783 chr16:2255787 . . 0 25 hm5C_associated_SNPs_105657 0 0 1 0 1 MLST8 chr16:2255876 5'GT 2255876 Upstream 90bp
chr1 17266514 17266514 1 + C A rs141271666 17266510 + 17266490 17266530 41 GCAGCGCCTGCGGGACAAGACCGACGGCGCCATGCAGGCCC GCAGCGCCTGCGGGACAAGACCGAAGGCGCCATGCAGGCCC < 41bp 0.381067923488678 0.76536168534076 0.60462236 0.7463412 prediction 0.53072337068152 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17266510 chr1:17266514 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_105664 0 0 0 0 1 CROCC chr1:17266588 5'GT 17266588 Upstream 75bp
chr8 92307857 92307857 1 + C A UCEC 92307853 + 92307833 92307873 41 ACCACACAGAGTAACACAAGCGTGCTGGGCTTATCCGACTT ACCACACAGAGTAACACAAGCGTGATGGGCTTATCCGACTT < 41bp 0.356882658204781 0.765352544395517 0.18523318 0.20203024 prediction 0.530705088791034 Functional Gain - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92307853 chr8:92307857 nonsynonymous SNV 0.430 3 25 hm5C_associated_SNPs_105666 0 0 0 0 2 SLC26A7 chr8:92307759 3'AG 92307759 Downstream 99bp
chr8 92307857 92307857 1 + C A UCEC 92307853 + 92307833 92307873 41 ACCACACAGAGTAACACAAGCGTGCTGGGCTTATCCGACTT ACCACACAGAGTAACACAAGCGTGATGGGCTTATCCGACTT < 41bp 0.356882658204781 0.765352544395517 0.18523318 0.20203024 prediction 0.530705088791034 Functional Gain - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92307853 chr8:92307857 nonsynonymous SNV 0.430 3 25 hm5C_associated_SNPs_105666 0 0 0 0 2 SLC26A7 chr8:92307931 5'GT 92307931 Upstream 75bp
chr2 64796343 64796343 1 + C G LUSC 64796342 + 64796322 64796362 41 GTCCTCCTTGGGAATAGACACCCGAAACATTGTGAGTTTGT GTCCTCCTTGGGAATAGACACGCGAAACATTGTGAGTTTGT < 41bp 0.471809661095743 0.765339500468482 0.3355438 0.836524 prediction 0.530679000936963 Functional Gain - AFTPH ENSG00000119844 CDS Human protein_coding chr2:64796342 chr2:64796343 synonymous SNV . 0 22 hm5C_associated_SNPs_105668 0 0 1 0 1 AFTPH chr2:64796352 5'GT 64796352 Upstream 10bp
chr10 13246284 13246284 1 + T C rs2277221 13246282 + 13246262 13246302 41 AGCAGCATGAATACCACTGGCATGATGGTGTGAAGAGGTTT AGCAGCATGAATACCACTGGCACGATGGTGTGAAGAGGTTT < 41bp 0.487356480519544 0.765334430749722 0.14411098 0.09579897 prediction 0.530668861499444 Functional Gain - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13246282 chr10:13246284 synonymous SNV . 0 23 hm5C_associated_SNPs_105670 0 0 1 0 2 MCM10 chr10:13246219 3'AG 13246219 Downstream 66bp
chr10 13246284 13246284 1 + T C rs2277221 13246282 + 13246262 13246302 41 AGCAGCATGAATACCACTGGCATGATGGTGTGAAGAGGTTT AGCAGCATGAATACCACTGGCACGATGGTGTGAAGAGGTTT < 41bp 0.487356480519544 0.765334430749722 0.14411098 0.09579897 prediction 0.530668861499444 Functional Gain - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13246282 chr10:13246284 synonymous SNV . 0 23 hm5C_associated_SNPs_105670 0 0 1 0 2 MCM10 chr10:13246364 5'GT 13246364 Upstream 81bp
chr12 52387845 52387845 1 + T G LUAD 52387843 + 52387823 52387863 41 GCCCGCCTGACGGCCCTGCGCATCAAGAAGACCCTCTCCCA GCCCGCCTGACGGCCCTGCGCAGCAAGAAGACCCTCTCCCA < 41bp 0.601057070039325 0.866379599385549 0.08928156 0.2822229 prediction 0.53064505869245 Functional Gain - ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52387843 chr12:52387845 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_105671 0 0 0 0 1 ACVR1B chr12:52387769 3'AG 52387769 Downstream 77bp
chr11 57135876 57135876 1 + T C UCEC 57135874 + 57135854 57135894 41 TTCAACATCATCCCCACCATCATCAGCTCTGTGGCGGCCTT TTCAACATCATCCCCACCATCACCAGCTCTGTGGCGGCCTT < 41bp 0.534322810893659 0.799644752225477 0.1769799 0.18239477 prediction 0.530643882663637 Functional Gain - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57135874 chr11:57135876 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_105672 0 0 0 0 2 P2RX3 chr11:57135845 3'AG 57135845 Downstream 32bp
chr11 57135876 57135876 1 + T C UCEC 57135874 + 57135854 57135894 41 TTCAACATCATCCCCACCATCATCAGCTCTGTGGCGGCCTT TTCAACATCATCCCCACCATCACCAGCTCTGTGGCGGCCTT < 41bp 0.534322810893659 0.799644752225477 0.1769799 0.18239477 prediction 0.530643882663637 Functional Gain - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57135874 chr11:57135876 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_105672 0 0 0 0 2 P2RX3 chr11:57135910 5'GT 57135910 Upstream 35bp
chr5 79373964 79373964 1 + C G LUAD 79373960 + 79373940 79373980 41 TGCCCAGAGAACGCAGAGGTCACCCTGACCGACTTCAGGGC TGCCCAGAGAACGCAGAGGTCACCGTGACCGACTTCAGGGC < 41bp 0.497712277856081 0.765314663507337 0.10486746 0.27811944 prediction 0.530629327014674 Functional Gain - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79373960 chr5:79373964 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_105673 0 0 0 0 2 THBS4 chr5:79373872 3'AG 79373872 Downstream 93bp
chr5 79373964 79373964 1 + C G LUAD 79373960 + 79373940 79373980 41 TGCCCAGAGAACGCAGAGGTCACCCTGACCGACTTCAGGGC TGCCCAGAGAACGCAGAGGTCACCGTGACCGACTTCAGGGC < 41bp 0.497712277856081 0.765314663507337 0.10486746 0.27811944 prediction 0.530629327014674 Functional Gain - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79373960 chr5:79373964 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_105673 0 0 0 0 2 THBS4 chr5:79374050 5'GT 79374050 Upstream 87bp
chr7 99204388 99204388 1 + C G rs182148364 99204387 + 99204367 99204407 41 GCAGTTTACATCATCCTCGGCCGGGTTTTCCTGCTCTCTGC GCAGTTTACATCATCCTCGGCGGGGTTTTCCTGCTCTCTGC < 41bp 0.570387485306981 0.835668924212401 0.8322757 0.9042928 prediction 0.530562877810839 Functional Gain - TMEM225B ENSG00000244219 ncRNA_exonic Human protein_coding chr7:99204387 chr7:99204388 . . 0 22 hm5C_associated_SNPs_105678 0 0 0 0 1 TMEM225B chr7:99204371 3'AG 99204371 Downstream 18bp
chr19 48255810 48255810 1 + C A rs113642899 48255806 + 48255786 48255826 41 CACCAAGCCGTCCCAGGCACCCGCCGTGGAGGTGGCGCCTG CACCAAGCCGTCCCAGGCACCCGCAGTGGAGGTGGCGCCTG < 41bp 0.35365410487136 0.765276397420013 0.10435721 0.1463257 prediction 0.530552794840025 Functional Gain - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48255806 chr19:48255810 synonymous SNV . 0 25 hm5C_associated_SNPs_105679 0 0 0 0 2 NOP53 chr19:48255769 3'AG 48255769 Downstream 42bp
chr19 48255810 48255810 1 + C A rs113642899 48255806 + 48255786 48255826 41 CACCAAGCCGTCCCAGGCACCCGCCGTGGAGGTGGCGCCTG CACCAAGCCGTCCCAGGCACCCGCAGTGGAGGTGGCGCCTG < 41bp 0.35365410487136 0.765276397420013 0.10435721 0.1463257 prediction 0.530552794840025 Functional Gain - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48255806 chr19:48255810 synonymous SNV . 0 25 hm5C_associated_SNPs_105679 0 0 0 0 2 NOP53 chr19:48255864 5'GT 48255864 Upstream 55bp
chr2 138759693 138759693 1 + T C UCEC 138759691 + 138759671 138759711 41 GTTTGCTTGGCATAAGGAGACATCATCTGAATACCAAAGTA GTTTGCTTGGCATAAGGAGACACCATCTGAATACCAAAGTA < 41bp 0.539999599450828 0.805253224363552 0.04151559 0.028250992 prediction 0.530507249825448 Functional Gain - HNMT ENSG00000150540 CDS Human protein_coding chr2:138759691 chr2:138759693 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_105681 0 0 1 0 2 HNMT chr2:138759634 3'AG 138759634 Downstream 60bp
chr2 138759693 138759693 1 + T C UCEC 138759691 + 138759671 138759711 41 GTTTGCTTGGCATAAGGAGACATCATCTGAATACCAAAGTA GTTTGCTTGGCATAAGGAGACACCATCTGAATACCAAAGTA < 41bp 0.539999599450828 0.805253224363552 0.04151559 0.028250992 prediction 0.530507249825448 Functional Gain - HNMT ENSG00000150540 CDS Human protein_coding chr2:138759691 chr2:138759693 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_105681 0 0 1 0 2 HNMT chr2:138759764 5'GT 138759764 Upstream 72bp
chr2 47612313 47612313 1 + C G LUSC 47612312 + 47612292 47612332 41 TTCTTCCACTCAGGTTATTTCCAGAAAGAAGAGAATGGCAA TTCTTCCACTCAGGTTATTTCGAGAAAGAAGAGAATGGCAA < 41bp 0.564590199032928 0.829785028884813 0.19598532 0.7750562 prediction 0.53038965970377 Functional Gain - EPCAM ENSG00000119888 CDS Human protein_coding chr2:47612312 chr2:47612313 synonymous SNV . 0 22 hm5C_associated_SNPs_105684 0 0 1 0 2 EPCAM chr2:47612305 3'AG 47612305 Downstream 9bp
chr2 47612313 47612313 1 + C G LUSC 47612312 + 47612292 47612332 41 TTCTTCCACTCAGGTTATTTCCAGAAAGAAGAGAATGGCAA TTCTTCCACTCAGGTTATTTCGAGAAAGAAGAGAATGGCAA < 41bp 0.564590199032928 0.829785028884813 0.19598532 0.7750562 prediction 0.53038965970377 Functional Gain - EPCAM ENSG00000119888 CDS Human protein_coding chr2:47612312 chr2:47612313 synonymous SNV . 0 22 hm5C_associated_SNPs_105684 0 0 1 0 2 EPCAM chr2:47612349 5'GT 47612349 Upstream 37bp
chr2 219299377 219299377 1 + T G HNSC 219299374 + 219299354 219299394 41 CGGGCCAATTTCCTCAATTCCAATGATGTCTTTGTCCTCAA CGGGCCAATTTCCTCAATTCCAAGGATGTCTTTGTCCTCAA < 41bp 0.363110380198524 0.765174277237926 0.12481117 0.39581686 prediction 0.530348554475851 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219299374 chr2:219299377 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_105688 0 0 0 0 1 VIL1 chr2:219299428 5'GT 219299428 Upstream 52bp
chr17 40705550 40705550 1 + T G STAD 40705547 + 40705527 40705567 41 GGACGTGAATGTAGTAGGGACTGTGCGGATGCTGCAGGCCT GGACGTGAATGTAGTAGGGACTGGGCGGATGCTGCAGGCCT < 41bp 0.364021298814279 0.765159319830367 0.38328174 0.8444768 prediction 0.530318639660735 Functional Gain - HSD17B1 ENSG00000108786 CDS Human protein_coding chr17:40705547 chr17:40705550 nonsynonymous SNV 0.081 3 24 hm5C_associated_SNPs_105690 0 0 1 0 1 HSD17B1 chr17:40705636 5'GT 40705636 Upstream 87bp
chr14 63747840 63747840 1 + T C PRAD 63747838 + 63747818 63747858 41 ATGCCTCACGTGCCTTATGTCCTCATAGGGACCCAGGTTAA ATGCCTCACGTGCCTTATGTCCCCATAGGGACCCAGGTTAA < 41bp 0.473217827954432 0.765150712009627 0.16506284 0.23134032 prediction 0.530301424019255 Functional Gain - RHOJ ENSG00000126785 CDS Human protein_coding chr14:63747838 chr14:63747840 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_105692 0 0 0 0 1 RHOJ chr14:63747853 5'GT 63747853 Upstream 14bp
chr10 135340997 135340997 1 + C G UCEC 135340993 + 135340973 135341013 41 AGGTGCACAGCAGCTGGAATCTGCCCCCAGGCCCTTTCCCG AGGTGCACAGCAGCTGGAATCTGCGCCCAGGCCCTTTCCCG < 41bp 0.555119847871257 0.820268602960961 0.12611514 0.25507146 prediction 0.530297510179409 Functional Gain - CYP2E1 ENSG00000130649 CDS Human protein_coding chr10:135340993 chr10:135340997 nonsynonymous SNV 0.978 5 25 hm5C_associated_SNPs_105693 0 0 0 0 1 CYP2E1 chr10:135341076 5'GT 135341076 Upstream 80bp
chr19 53905376 53905376 1 + T G LUAD 53905374 + 53905354 53905394 41 TCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGAC TCTCAGGAGGAGTGGAAATGCCGGGACCCTGCTCAGAGGAC < 41bp 0.423972479854825 0.765132678479693 0.0856466 0.7964055 prediction 0.530265356959386 Functional Gain - ZNF765 ENSG00000196417 CDS Human protein_coding chr19:53905374 chr19:53905376 nonsynonymous SNV 0.017 3 23 hm5C_associated_SNPs_105695 0 0 0 0 1 ZNF765 chr19:53905444 5'GT 53905444 Upstream 69bp
chr17 34941826 34941826 1 + T C UCEC 34941824 + 34941804 34941844 41 AATTGTTACCAATGAAAATACATCATGTACCTGTCCTAGCA AATTGTTACCAATGAAAATACACCATGTACCTGTCCTAGCA < 41bp 0.546573336635659 0.811645827048703 0.014350891 0.009677023 prediction 0.530144980826087 Functional Gain - GGNBP2 ENSG00000005955 CDS Human other chr17:34941824 chr17:34941826 nonsynonymous SNV 0.986 1 23 hm5C_associated_SNPs_105701 0 0 1 0 2 GGNBP2 chr17:34941730 3'AG 34941730 Downstream 97bp
chr17 34941826 34941826 1 + T C UCEC 34941824 + 34941804 34941844 41 AATTGTTACCAATGAAAATACATCATGTACCTGTCCTAGCA AATTGTTACCAATGAAAATACACCATGTACCTGTCCTAGCA < 41bp 0.546573336635659 0.811645827048703 0.014350891 0.009677023 prediction 0.530144980826087 Functional Gain - GGNBP2 ENSG00000005955 CDS Human other chr17:34941824 chr17:34941826 nonsynonymous SNV 0.986 1 23 hm5C_associated_SNPs_105701 0 0 1 0 2 GGNBP2 chr17:34941880 5'GT 34941880 Upstream 55bp
chr1 241752098 241752098 1 + C G LUAD 241752094 + 241752074 241752114 41 GATTGAGAATCCCAGATGATCACGCGATTTCAGACCTATCC GATTGAGAATCCCAGATGATCACGGGATTTCAGACCTATCC < 41bp 0.496804911251965 0.765070369428549 0.8812728 0.91230255 prediction 0.530140738857097 Functional Gain - KMO ENSG00000117009 CDS Human protein_coding chr1:241752094 chr1:241752098 nonsynonymous SNV 0.091 4 25 hm5C_associated_SNPs_105703 0 0 0 0 2 KMO chr1:241752050 3'AG 241752050 Downstream 49bp
chr1 241752098 241752098 1 + C G LUAD 241752094 + 241752074 241752114 41 GATTGAGAATCCCAGATGATCACGCGATTTCAGACCTATCC GATTGAGAATCCCAGATGATCACGGGATTTCAGACCTATCC < 41bp 0.496804911251965 0.765070369428549 0.8812728 0.91230255 prediction 0.530140738857097 Functional Gain - KMO ENSG00000117009 CDS Human protein_coding chr1:241752094 chr1:241752098 nonsynonymous SNV 0.091 4 25 hm5C_associated_SNPs_105703 0 0 0 0 2 KMO chr1:241752132 5'GT 241752132 Upstream 35bp
chr2 27275949 27275949 1 + C A ESCA 27275945 + 27275925 27275965 41 AGGGGTAGGAGGTGGGGCGTCAGCCCTGACCAGTGGCATTG AGGGGTAGGAGGTGGGGCGTCAGCACTGACCAGTGGCATTG < 41bp 0.651046293151638 0.91611108354787 0.80930114 0.7575926 prediction 0.530129580792464 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27275945 chr2:27275949 synonymous SNV . 0 25 hm5C_associated_SNPs_105706 0 0 1 0 1 AGBL5 chr2:27276041 5'GT 27276041 Upstream 93bp
chr1 207818592 207818592 1 + T G KIRP 207818590 + 207818570 207818610 41 GCGCCGCTCATGGCGCCTCCCGTCCGTCTCGAGCGTCCCTT GCGCCGCTCATGGCGCCTCCCGGCCGTCTCGAGCGTCCCTT < 41bp 0.41741611981027 0.765052935320786 0.052748263 0.5504298 prediction 0.530105870641572 Functional Gain - CR1L ENSG00000197721 CDS Human protein_coding chr1:207818590 chr1:207818592 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_105709 0 0 1 0 1 CR1L chr1:207818675 5'GT 207818675 Upstream 84bp
chr10 75527635 75527635 1 + C G LUAD 75527631 + 75527611 75527651 41 AGACAGGTGCCTATCAGACCCTGGCCAAAGAGTGTGTGGCC AGACAGGTGCCTATCAGACCCTGGGCAAAGAGTGTGTGGCC < 41bp 0.532207636672783 0.797242957284541 0.07016006 0.34384584 prediction 0.530070641223517 Functional Gain - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75527631 chr10:75527635 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105711 0 0 1 0 1 SEC24C chr10:75527595 3'AG 75527595 Downstream 41bp
chr1 33945237 33945237 1 + T C COAD 33945235 + 33945215 33945255 41 CCTGGGTGCAGGCACGCCACCCTGAGAGTGGTGAGGAGGCT CCTGGGTGCAGGCACGCCACCCCGAGAGTGGTGAGGAGGCT < 41bp 0.489871664086996 0.765027555946473 0.031369805 0.038561225 prediction 0.530055111892946 Functional Gain - ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33945235 chr1:33945237 synonymous SNV . 0 23 hm5C_associated_SNPs_105712 0 0 0 0 1 ZSCAN20 chr1:33945306 5'GT 33945306 Upstream 70bp
chr9 140056475 140056475 1 + C A UCEC 140056471 + 140056451 140056491 41 GCGCCGCTAACCATAAACAACGAGCGCGCGCAGTACATCGA GCGCCGCTAACCATAAACAACGAGAGCGCGCAGTACATCGA < 41bp 0.355279337279744 0.765024981398324 0.38306305 0.27030516 prediction 0.530049962796647 Functional Gain - GRIN1 ENSG00000176884 CDS Human protein_coding chr9:140056471 chr9:140056475 nonsynonymous SNV 0.994 3 25 hm5C_associated_SNPs_105713 0 0 0 0 2 GRIN1 chr9:140056376 3'AG 140056376 Downstream 100bp
chr9 140056475 140056475 1 + C A UCEC 140056471 + 140056451 140056491 41 GCGCCGCTAACCATAAACAACGAGCGCGCGCAGTACATCGA GCGCCGCTAACCATAAACAACGAGAGCGCGCAGTACATCGA < 41bp 0.355279337279744 0.765024981398324 0.38306305 0.27030516 prediction 0.530049962796647 Functional Gain - GRIN1 ENSG00000176884 CDS Human protein_coding chr9:140056471 chr9:140056475 nonsynonymous SNV 0.994 3 25 hm5C_associated_SNPs_105713 0 0 0 0 2 GRIN1 chr9:140056540 5'GT 140056540 Upstream 66bp
chr15 25444470 25444470 1 + C G rs113238127 25444469 + 25444449 25444489 41 CCCAGGCCAGTGGCCATCAGCCAGGTGCCCACCCTGGTGTG CCCAGGCCAGTGGCCATCAGCGAGGTGCCCACCCTGGTGTG < 41bp 0.551602081608484 0.816626330777347 0.8639916 0.93612564 prediction 0.530048498337727 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25444469 chr15:25444470 . . 0 22 hm5C_associated_SNPs_105714 0 0 0 0 2 SNHG14 chr15:25444409 3'AG 25444409 Downstream 62bp
chr15 25444470 25444470 1 + C G rs113238127 25444469 + 25444449 25444489 41 CCCAGGCCAGTGGCCATCAGCCAGGTGCCCACCCTGGTGTG CCCAGGCCAGTGGCCATCAGCGAGGTGCCCACCCTGGTGTG < 41bp 0.551602081608484 0.816626330777347 0.8639916 0.93612564 prediction 0.530048498337727 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25444469 chr15:25444470 . . 0 22 hm5C_associated_SNPs_105714 0 0 0 0 2 SNHG14 chr15:25444538 5'GT 25444538 Upstream 69bp
chr8 10388999 10388999 1 + C G KIRP 10388998 + 10388978 10389018 41 CCATCTGCCTCCCCACGCAGCCCGGCCCTGCCACATGGCGC CCATCTGCCTCCCCACGCAGCGCGGCCCTGCCACATGGCGC < 41bp 0.454174972623187 0.764999671111677 0.012499899 0.06597522 prediction 0.529999342223353 Functional Gain - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10388998 chr8:10388999 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_105722 0 0 0 0 1 PRSS55 chr8:10389055 5'GT 10389055 Upstream 57bp
chr8 8086135 8086135 1 + C A rs184778446 8086131 + 8086111 8086151 41 CGGCCCCGCCCACATCATGACGCCCGAGGAGAACGCGGGTA CGGCCCCGCCCACATCATGACGCCAGAGGAGAACGCGGGTA < 41bp 0.392917983949178 0.764997728779605 0.19233438 0.44097406 prediction 0.529995457559211 Functional Gain - FAM86B3P ENSG00000173295 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr8:8086131 chr8:8086135 . . 0 25 hm5C_associated_SNPs_105723 0 0 0 0 1 FAM86B3P chr8:8086222 5'GT 8086222 Upstream 88bp
chr15 25444470 25444470 1 + C G rs113238127 25444466 + 25444446 25444486 41 GGACCCAGGCCAGTGGCCATCAGCCAGGTGCCCACCCTGGT GGACCCAGGCCAGTGGCCATCAGCGAGGTGCCCACCCTGGT < 41bp 0.480983218897769 0.764975159427944 0.30973044 0.8477719 prediction 0.529950318855887 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25444466 chr15:25444470 . . 0 25 hm5C_associated_SNPs_105726 0 0 0 0 2 SNHG14 chr15:25444409 3'AG 25444409 Downstream 62bp
chr15 25444470 25444470 1 + C G rs113238127 25444466 + 25444446 25444486 41 GGACCCAGGCCAGTGGCCATCAGCCAGGTGCCCACCCTGGT GGACCCAGGCCAGTGGCCATCAGCGAGGTGCCCACCCTGGT < 41bp 0.480983218897769 0.764975159427944 0.30973044 0.8477719 prediction 0.529950318855887 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25444466 chr15:25444470 . . 0 25 hm5C_associated_SNPs_105726 0 0 0 0 2 SNHG14 chr15:25444538 5'GT 25444538 Upstream 69bp
chr12 56491687 56491687 1 + C A UCEC 56491683 + 56491663 56491703 41 ATTTTGGTGTGGCTGACCTGCTGCCTCCTGATGATAAGCAG ATTTTGGTGTGGCTGACCTGCTGCATCCTGATGATAAGCAG < 41bp 0.349084645854701 0.764970823052913 0.32947385 0.25411516 prediction 0.529941646105826 Functional Gain - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56491683 chr12:56491687 nonsynonymous SNV 0.870 1 25 hm5C_associated_SNPs_105727 0 0 1 0 1 ERBB3 chr12:56491724 5'GT 56491724 Upstream 38bp
chr10 90503075 90503075 1 + T C rs390152 90503073 + 90503053 90503093 41 ATCAGAACATGATGCACTTCCATCAGGTACAAAAATAATCC ATCAGAACATGATGCACTTCCACCAGGTACAAAAATAATCC < 41bp 0.51515115893473 0.780110580762611 0.06696266 0.11282405 prediction 0.529918843655762 Functional Gain - LIPK ENSG00000204021 CDS Human protein_coding chr10:90503073 chr10:90503075 synonymous SNV . 0 23 hm5C_associated_SNPs_105728 0 0 0 0 2 LIPK chr10:90503007 3'AG 90503007 Downstream 69bp
chr10 90503075 90503075 1 + T C rs390152 90503073 + 90503053 90503093 41 ATCAGAACATGATGCACTTCCATCAGGTACAAAAATAATCC ATCAGAACATGATGCACTTCCACCAGGTACAAAAATAATCC < 41bp 0.51515115893473 0.780110580762611 0.06696266 0.11282405 prediction 0.529918843655762 Functional Gain - LIPK ENSG00000204021 CDS Human protein_coding chr10:90503073 chr10:90503075 synonymous SNV . 0 23 hm5C_associated_SNPs_105728 0 0 0 0 2 LIPK chr10:90503078 5'GT 90503078 Upstream 4bp
chr7 116380952 116380952 1 + C A SKCM 116380948 + 116380928 116380968 41 GCTTGGGCTGCAGACATTTCCAGTCCTGCAGTCAATGCCTC GCTTGGGCTGCAGACATTTCCAGTACTGCAGTCAATGCCTC < 41bp 0.387902538582189 0.764956713598001 0.25120687 0.1379905 prediction 0.529913427196002 Functional Gain - MET ENSG00000105976 CDS Human protein_coding chr7:116380948 chr7:116380952 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_105729 0 0 1 0 1 MET chr7:116380906 3'AG 116380906 Downstream 47bp
chr1 11775212 11775212 1 + C T COAD 11775211 + 11775191 11775231 41 TGCGGGAGCATCTCTGCACACCCCACAACCGAGGCCTCAAC TGCGGGAGCATCTCTGCACACTCCACAACCGAGGCCTCAAC < 41bp 0.530400758225608 0.795316968613554 0.006518036 0.89812726 prediction 0.529832420775891 Functional Gain - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11775211 chr1:11775212 nonsynonymous SNV 0.989 3 22 hm5C_associated_SNPs_105734 0 0 0 0 2 DRAXIN chr1:11775176 3'AG 11775176 Downstream 37bp
chr1 11775212 11775212 1 + C T COAD 11775211 + 11775191 11775231 41 TGCGGGAGCATCTCTGCACACCCCACAACCGAGGCCTCAAC TGCGGGAGCATCTCTGCACACTCCACAACCGAGGCCTCAAC < 41bp 0.530400758225608 0.795316968613554 0.006518036 0.89812726 prediction 0.529832420775891 Functional Gain - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11775211 chr1:11775212 nonsynonymous SNV 0.989 3 22 hm5C_associated_SNPs_105734 0 0 0 0 2 DRAXIN chr1:11775265 5'GT 11775265 Upstream 54bp
chr17 56277106 56277106 1 + T A rs33955150 56277102 + 56277082 56277122 41 CCGGGCCTCCGCACCCAACTCGCATGTCCCACTTAGCTCTG CCGGGCCTCCGCACCCAACTCGCAAGTCCCACTTAGCTCTG < 41bp 0.601405902516918 0.86631072928178 0.07356349 0.12726673 prediction 0.529809653529725 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56277102 chr17:56277106 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_105736 0 0 0 0 1 EPX chr17:56277155 5'GT 56277155 Upstream 50bp
chr2 10091933 10091933 1 + T A COAD 10091929 + 10091909 10091949 41 ACTGTCCCAACCCGAAAGTCCAGTTCTGCGGCCCGGCAGCG ACTGTCCCAACCCGAAAGTCCAGTACTGCGGCCCGGCAGCG < 41bp 0.546693181976839 0.811595587060481 0.31695092 0.25769144 prediction 0.529804810167282 Functional Gain - GRHL1 ENSG00000134317 UTR5 Human protein_coding chr2:10091929 chr2:10091933 . . 0 25 hm5C_associated_SNPs_105737 0 0 0 0 1 GRHL1 chr2:10091982 5'GT 10091982 Upstream 50bp
chr9 21854717 21854717 1 + C G ESCA 21854713 + 21854693 21854733 41 ATCGAGGGACCTCGTTTTAGCTCCCGGGCAGAAAGCTTCAT ATCGAGGGACCTCGTTTTAGCTCCGGGGCAGAAAGCTTCAT < 41bp 0.504972539528922 0.769859265852411 0.03737676 0.120518744 prediction 0.529773452646979 Functional Gain - MTAP ENSG00000099810 CDS Human protein_coding chr9:21854713 chr9:21854717 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_105741 0 0 1 0 1 MTAP chr9:21854630 3'AG 21854630 Downstream 88bp
chr6 143792536 143792536 1 + C G rs199781957 143792535 + 143792515 143792555 41 TACAGACAATTCTTGCTCCCCCAGATGTCCAACAGCAGTAT TACAGACAATTCTTGCTCCCCGAGATGTCCAACAGCAGTAT < 41bp 0.460166302130928 0.764855919728584 0.13664126 0.21701899 prediction 0.529711839457168 Functional Gain - PEX3 ENSG00000034693 CDS Human protein_coding chr6:143792535 chr6:143792536 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_105745 2 0 0 0 2 PEX3 chr6:143792520 3'AG 143792520 Downstream 17bp
chr6 143792536 143792536 1 + C G rs199781957 143792535 + 143792515 143792555 41 TACAGACAATTCTTGCTCCCCCAGATGTCCAACAGCAGTAT TACAGACAATTCTTGCTCCCCGAGATGTCCAACAGCAGTAT < 41bp 0.460166302130928 0.764855919728584 0.13664126 0.21701899 prediction 0.529711839457168 Functional Gain - PEX3 ENSG00000034693 CDS Human protein_coding chr6:143792535 chr6:143792536 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_105745 2 0 0 0 2 PEX3 chr6:143792586 5'GT 143792586 Upstream 51bp
chr19 18684538 18684538 1 + C G BLCA 18684534 + 18684514 18684554 41 AGCTGGAGGATGGCCGCACTCTCTCAGACTACAACATCCAG AGCTGGAGGATGGCCGCACTCTCTGAGACTACAACATCCAG < 41bp 0.53547809779178 0.800323112711775 0.0420084 0.044707328 prediction 0.52969002983999 Functional Gain - UBA52 ENSG00000221983 CDS Human protein_coding chr19:18684534 chr19:18684538 stopgain 0.963 1 25 hm5C_associated_SNPs_105749 0 0 1 0 2 UBA52 chr19:18684472 3'AG 18684472 Downstream 67bp
chr19 18684538 18684538 1 + C G BLCA 18684534 + 18684514 18684554 41 AGCTGGAGGATGGCCGCACTCTCTCAGACTACAACATCCAG AGCTGGAGGATGGCCGCACTCTCTGAGACTACAACATCCAG < 41bp 0.53547809779178 0.800323112711775 0.0420084 0.044707328 prediction 0.52969002983999 Functional Gain - UBA52 ENSG00000221983 CDS Human protein_coding chr19:18684534 chr19:18684538 stopgain 0.963 1 25 hm5C_associated_SNPs_105749 0 0 1 0 2 UBA52 chr19:18684558 5'GT 18684558 Upstream 21bp
chr20 39986541 39986541 1 + T G STAD 39986538 + 39986518 39986558 41 TCAGAAATGGGTACAAGTTCCTGTACTGCTCGGCGCGGGCC TCAGAAATGGGTACAAGTTCCTGGACTGCTCGGCGCGGGCC < 41bp 0.644024511464239 0.908849198185351 0.11211771 0.49072996 prediction 0.529649373442223 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39986538 chr20:39986541 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_105750 0 0 0 1 2 LPIN3 chr20:39986522 3'AG 39986522 Downstream 20bp
chr20 39986541 39986541 1 + T G STAD 39986538 + 39986518 39986558 41 TCAGAAATGGGTACAAGTTCCTGTACTGCTCGGCGCGGGCC TCAGAAATGGGTACAAGTTCCTGGACTGCTCGGCGCGGGCC < 41bp 0.644024511464239 0.908849198185351 0.11211771 0.49072996 prediction 0.529649373442223 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39986538 chr20:39986541 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_105750 0 0 0 1 2 LPIN3 chr20:39986597 5'GT 39986597 Upstream 57bp
chr1 150479482 150479482 1 + T G LUSC 150479479 + 150479459 150479499 41 GGAGTGGGACTTGCCTGAGGCTGTGCAGCGACTGGTGGAGC GGAGTGGGACTTGCCTGAGGCTGGGCAGCGACTGGTGGAGC < 41bp 0.375989236536813 0.764809017841133 0.057712346 0.24826378 prediction 0.529618035682265 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150479479 chr1:150479482 nonsynonymous SNV 0.685 3 24 hm5C_associated_SNPs_105751 0 0 1 0 1 TARS2 chr1:150479392 3'AG 150479392 Downstream 91bp
chr13 21720956 21720956 1 + C A rs4620 21720952 + 21720932 21720972 41 AAAAAAATCCAGGATGGATGCAACCTTGAAAGAACTGACAA AAAAAAATCCAGGATGGATGCAACATTGAAAGAACTGACAA < 41bp 0.367109937763293 0.764770298844271 0.033163935 0.07527909 prediction 0.529540597688542 Functional Gain - SAP18 ENSG00000150459 CDS Human protein_coding chr13:21720952 chr13:21720956 synonymous SNV . 0 25 hm5C_associated_SNPs_105754 0 0 1 0 1 SAP18 chr13:21720944 3'AG 21720944 Downstream 13bp
chr1 118494980 118494980 1 + T C GBM 118494978 + 118494958 118494998 41 TCTTCACTGCCGGAAAAGATCATAAGATTAAACAGTGGGAT TCTTCACTGCCGGAAAAGATCACAAGATTAAACAGTGGGAT < 41bp 0.503053810269068 0.767810120432668 0.1533575 0.12773448 prediction 0.529512620327201 Functional Gain - WDR3 ENSG00000065183 CDS Human protein_coding chr1:118494978 chr1:118494980 synonymous SNV . 0 23 hm5C_associated_SNPs_105757 0 0 1 0 1 WDR3 chr1:118495031 5'GT 118495031 Upstream 52bp
chr19 7743399 7743399 1 + C A rs144579994 7743395 + 7743375 7743415 41 AGTCTCAAACTCCGTACAAGCATGCGAAGAGAGACAGAAGA AGTCTCAAACTCCGTACAAGCATGAGAAGAGAGACAGAAGA < 41bp 0.374119375631899 0.764751802300096 0.21586737 0.36159807 prediction 0.529503604600193 Functional Gain - MCEMP1 ENSG00000183019;ENSG00000269711 CDS Human protein_coding chr19:7743395 chr19:7743399 stopgain 0.000 0 25 hm5C_associated_SNPs_105758 0 0 0 0 2 MCEMP1 chr19:7743377 3'AG 7743377 Downstream 23bp
chr19 7743399 7743399 1 + C A rs144579994 7743395 + 7743375 7743415 41 AGTCTCAAACTCCGTACAAGCATGCGAAGAGAGACAGAAGA AGTCTCAAACTCCGTACAAGCATGAGAAGAGAGACAGAAGA < 41bp 0.374119375631899 0.764751802300096 0.21586737 0.36159807 prediction 0.529503604600193 Functional Gain - MCEMP1 ENSG00000183019;ENSG00000269711 CDS Human other chr19:7743395 chr19:7743399 stopgain 0.000 0 25 hm5C_associated_SNPs_105758 0 0 0 0 2 MCEMP1 chr19:7743490 5'GT 7743490 Upstream 92bp
chr15 41145767 41145767 1 + C A LUSC 41145763 + 41145743 41145783 41 CCAGCTGACAGTGACTAGCTCAGACCACCCAGAGGACACGG CCAGCTGACAGTGACTAGCTCAGAACACCCAGAGGACACGG < 41bp 0.360070804638071 0.764714245955816 0.20103651 0.23648232 prediction 0.529428491911633 Functional Gain - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41145763 chr15:41145767 nonsynonymous SNV 0.005 1 25 hm5C_associated_SNPs_105761 0 0 0 0 2 SPINT1 chr15:41145687 3'AG 41145687 Downstream 81bp
chr15 41145767 41145767 1 + C A LUSC 41145763 + 41145743 41145783 41 CCAGCTGACAGTGACTAGCTCAGACCACCCAGAGGACACGG CCAGCTGACAGTGACTAGCTCAGAACACCCAGAGGACACGG < 41bp 0.360070804638071 0.764714245955816 0.20103651 0.23648232 prediction 0.529428491911633 Functional Gain - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41145763 chr15:41145767 nonsynonymous SNV 0.005 1 25 hm5C_associated_SNPs_105761 0 0 0 0 2 SPINT1 chr15:41145825 5'GT 41145825 Upstream 59bp
chr16 5061153 5061153 1 + C A rs199905767 5061149 + 5061129 5061169 41 CTGCTCCAGTGGCAAATGCACAGCCCCCCCAGCAGCGTGGC CTGCTCCAGTGGCAAATGCACAGCACCCCCAGCAGCGTGGC < 41bp 0.354398452128445 0.764712861462526 0.14681941 0.09610161 prediction 0.529425722925051 Functional Gain - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5061149 chr16:5061153 nonsynonymous SNV 0.255 0 25 hm5C_associated_SNPs_105762 0 0 0 0 1 SEC14L5 chr16:5061096 3'AG 5061096 Downstream 58bp
chr16 10841095 10841095 1 + C A THCA 10841091 + 10841071 10841111 41 GTTGGGAAAAGCACATTCAGCGCCCACCTTGCCCATGGCCT GTTGGGAAAAGCACATTCAGCGCCAACCTTGCCCATGGCCT < 41bp 0.338407417094301 0.764639481511608 0.16670617 0.27456355 prediction 0.529278963023216 Functional Gain - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10841091 chr16:10841095 nonsynonymous SNV 0.989 1 25 hm5C_associated_SNPs_105776 0 0 1 0 2 NUBP1 chr16:10841000 3'AG 10841000 Downstream 96bp
chr16 10841095 10841095 1 + C A THCA 10841091 + 10841071 10841111 41 GTTGGGAAAAGCACATTCAGCGCCCACCTTGCCCATGGCCT GTTGGGAAAAGCACATTCAGCGCCAACCTTGCCCATGGCCT < 41bp 0.338407417094301 0.764639481511608 0.16670617 0.27456355 prediction 0.529278963023216 Functional Gain - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10841091 chr16:10841095 nonsynonymous SNV 0.989 1 25 hm5C_associated_SNPs_105776 0 0 1 0 2 NUBP1 chr16:10841133 5'GT 10841133 Upstream 39bp
chr14 62541935 62541935 1 + C T SKCM 62541934 + 62541914 62541954 41 CATCCCTGCTCACTCACAGTCCCCATGTGAAAGAGGGGATG CATCCCTGCTCACTCACAGTCTCCATGTGAAAGAGGGGATG < 41bp 0.500767803404345 0.76538341798133 0.07328594 0.9447619 prediction 0.529231229153969 Functional Gain - SYT16 ENSG00000139973 CDS Human protein_coding chr14:62541934 chr14:62541935 synonymous SNV . 0 22 hm5C_associated_SNPs_105779 0 0 0 0 1 SYT16 chr14:62541853 3'AG 62541853 Downstream 83bp
chr1 110082551 110082551 1 + T A rs41279738 110082547 + 110082527 110082567 41 CATCAGCTGAGAGGAGCTATCACATGGGAGCCGGGACTGCT CATCAGCTGAGAGGAGCTATCACAAGGGAGCCGGGACTGCT < 41bp 0.540901781382467 0.805511633773924 0.4009999 0.59915376 prediction 0.529219704782913 Functional Gain - GPR61 ENSG00000254942 ncRNA_exonic Human antisense chr1:110082547 chr1:110082551 . . 0 25 hm5C_associated_SNPs_105780 0 1 1 0 1 GPR61 chr1:110082575 5'GT 110082575 Upstream 25bp
chr4 71628266 71628266 1 + T C CESC 71628264 + 71628244 71628284 41 TATCTCATGGCTAATGAACGCATGAACCTCATGAACATGGC TATCTCATGGCTAATGAACGCACGAACCTCATGAACATGGC < 41bp 0.531020671544052 0.795625858149691 0.37815738 0.34098113 prediction 0.529210373211277 Functional Gain - RUFY3 ENSG00000018189 CDS Human protein_coding chr4:71628264 chr4:71628266 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_105783 0 0 1 0 1 RUFY3 chr4:71628236 3'AG 71628236 Downstream 31bp
chr5 170736729 170736729 1 + T G rs150863748 170736727 + 170736707 170736747 41 CCGTGCCCACGGTCTCCAGCCTTGGCGGTCTCAATTTCCCC CCGTGCCCACGGTCTCCAGCCTGGGCGGTCTCAATTTCCCC < 41bp 0.421369693777168 0.764599975987903 0.06537527 0.39942384 prediction 0.529199951975805 Functional Gain - TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736727 chr5:170736729 synonymous SNV . 0 23 hm5C_associated_SNPs_105784 0 0 0 0 1 TLX3 chr5:170736790 5'GT 170736790 Upstream 62bp
chrX 135592353 135592353 1 + C G LUAD 135592349 + 135592329 135592369 41 GTGGCCGTCAAATCACTGCCCAGGCATGGGATGGGACTACA GTGGCCGTCAAATCACTGCCCAGGGATGGGATGGGACTACA < 41bp 0.46976502046312 0.764589598944171 0.14455965 0.5966427 prediction 0.529179197888341 Functional Gain - HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135592349 chrX:135592353 nonsynonymous SNV 0.981 0 25 hm5C_associated_SNPs_105786 0 0 1 0 1 HTATSF1 chrX:135592378 5'GT 135592378 Upstream 26bp
chr4 84457880 84457880 1 + C G BLCA 84457879 + 84457859 84457899 41 CGGAGTGTCTCTGGGCATCTCCGAGATCTACATGAAGATCC CGGAGTGTCTCTGGGCATCTCGGAGATCTACATGAAGATCC < 41bp 0.575444776587703 0.840006140940871 0.38579592 0.91440976 prediction 0.529122728706336 Functional Gain - GPAT3 ENSG00000138678 CDS Human protein_coding chr4:84457879 chr4:84457880 synonymous SNV . 0 22 hm5C_associated_SNPs_105789 0 0 0 0 1 GPAT3 chr4:84457916 5'GT 84457916 Upstream 37bp
chr6 88117779 88117779 1 + C A rs554840206 88117775 + 88117755 88117795 41 GGCCCCAGGACAGAAGCAGACAGACACGGCTCCTGCTGTCG GGCCCCAGGACAGAAGCAGACAGAAACGGCTCCTGCTGTCG < 41bp 0.556240456177947 0.820795620937326 0.0908829 0.103345245 prediction 0.529110329518758 Functional Gain - CFAP206 ENSG00000213204;ENSG00000272514 UTR5 Human other chr6:88117775 chr6:88117779 . . 0 25 hm5C_associated_SNPs_105791 0 0 0 0 1 CFAP206 chr6:88117807 5'GT 88117807 Upstream 29bp
chr4 123342481 123342481 1 + T A rs191050990 123342477 + 123342457 123342497 41 GTAAGGCTGCAATGTTAAGTCGGTTTAACCTGCTTGCCAAA GTAAGGCTGCAATGTTAAGTCGGTATAACCTGCTTGCCAAA < 41bp 0.446973221446162 0.764529466811583 0.45997983 0.41260114 prediction 0.529058933623167 Functional Gain - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123342477 chr4:123342481 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_105795 0 0 0 0 2 ADAD1 chr4:123342416 3'AG 123342416 Downstream 66bp
chr4 123342481 123342481 1 + T A rs191050990 123342477 + 123342457 123342497 41 GTAAGGCTGCAATGTTAAGTCGGTTTAACCTGCTTGCCAAA GTAAGGCTGCAATGTTAAGTCGGTATAACCTGCTTGCCAAA < 41bp 0.446973221446162 0.764529466811583 0.45997983 0.41260114 prediction 0.529058933623167 Functional Gain - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123342477 chr4:123342481 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_105795 0 0 0 0 2 ADAD1 chr4:123342545 5'GT 123342545 Upstream 65bp
chr19 12921196 12921196 1 + T A rs62619782 12921192 + 12921172 12921212 41 GAAACTGCAGGACTTGGATACTGATTATGGCTCAGGCTACC GAAACTGCAGGACTTGGATACTGAATATGGCTCAGGCTACC < 41bp 0.440938105054559 0.76452136905639 0.14840609 0.3870543 prediction 0.529042738112781 Functional Gain - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12921192 chr19:12921196 nonsynonymous SNV 0.973 2 25 hm5C_associated_SNPs_105797 1 0 1 0 2 RNASEH2A chr19:12921131 3'AG 12921131 Downstream 66bp
chr19 12921196 12921196 1 + T A rs62619782 12921192 + 12921172 12921212 41 GAAACTGCAGGACTTGGATACTGATTATGGCTCAGGCTACC GAAACTGCAGGACTTGGATACTGAATATGGCTCAGGCTACC < 41bp 0.440938105054559 0.76452136905639 0.14840609 0.3870543 prediction 0.529042738112781 Functional Gain - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12921192 chr19:12921196 nonsynonymous SNV 0.973 2 25 hm5C_associated_SNPs_105797 1 0 1 0 2 RNASEH2A chr19:12921218 5'GT 12921218 Upstream 23bp
chr1 111781398 111781398 1 + T C COAD 111781396 + 111781376 111781416 41 ATGCTGTGGGGTACTGGATACATAAGGGAATGCCATCAGAG ATGCTGTGGGGTACTGGATACACAAGGGAATGCCATCAGAG < 41bp 0.508530191638717 0.77302503126802 0.1040346 0.06310177 prediction 0.528989679258604 Functional Gain - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111781396 chr1:111781398 synonymous SNV . 0 23 hm5C_associated_SNPs_105798 0 0 0 0 1 CHI3L2 chr1:111781372 3'AG 111781372 Downstream 27bp
chr17 61886961 61886961 1 + T C KIRC 61886959 + 61886939 61886979 41 TGAAAAAGAAAGCTACCAATCTTCAAAGAGTCTCTTACCTT TGAAAAAGAAAGCTACCAATCTCCAAAGAGTCTCTTACCTT < 41bp 0.478613715808244 0.764488811355315 0.26108333 0.959252 prediction 0.52897762271063 Functional Gain - DDX42 ENSG00000198231 CDS Human protein_coding chr17:61886959 chr17:61886961 synonymous SNV . 0 23 hm5C_associated_SNPs_105799 0 0 1 0 1 DDX42 chr17:61887019 5'GT 61887019 Upstream 59bp
chr5 33462080 33462080 1 + T A KIRC 33462076 + 33462056 33462096 41 GCAACCATCCAGCTGGATTTCCAGTTGCCCATCAGATTTAA GCAACCATCCAGCTGGATTTCCAGATGCCCATCAGATTTAA < 41bp 0.430226741156052 0.764487184439878 0.23590633 0.89377695 prediction 0.528974368879756 Functional Gain - TARS ENSG00000113407 CDS Human protein_coding chr5:33462076 chr5:33462080 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_105800 0 0 1 0 2 TARS chr5:33462011 3'AG 33462011 Downstream 70bp
chr5 33462080 33462080 1 + T A KIRC 33462076 + 33462056 33462096 41 GCAACCATCCAGCTGGATTTCCAGTTGCCCATCAGATTTAA GCAACCATCCAGCTGGATTTCCAGATGCCCATCAGATTTAA < 41bp 0.430226741156052 0.764487184439878 0.23590633 0.89377695 prediction 0.528974368879756 Functional Gain - TARS ENSG00000113407 CDS Human protein_coding chr5:33462076 chr5:33462080 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_105800 0 0 1 0 2 TARS chr5:33462111 5'GT 33462111 Upstream 32bp
chr22 24919646 24919646 1 + C A rs113975342 24919642 + 24919622 24919662 41 TATGTGGCAGCCCCTGACAGCAGCCGGACTCCTGGGCTGTC TATGTGGCAGCCCCTGACAGCAGCAGGACTCCTGGGCTGTC < 41bp 0.344661804216101 0.764477772563303 0.33543062 0.40628526 prediction 0.528955545126607 Functional Gain - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24919642 chr22:24919646 synonymous SNV . 0 25 hm5C_associated_SNPs_105802 2 0 0 0 2 UPB1 chr22:24919587 3'AG 24919587 Downstream 60bp
chr22 24919646 24919646 1 + C A rs113975342 24919642 + 24919622 24919662 41 TATGTGGCAGCCCCTGACAGCAGCCGGACTCCTGGGCTGTC TATGTGGCAGCCCCTGACAGCAGCAGGACTCCTGGGCTGTC < 41bp 0.344661804216101 0.764477772563303 0.33543062 0.40628526 prediction 0.528955545126607 Functional Gain - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24919642 chr22:24919646 synonymous SNV . 0 25 hm5C_associated_SNPs_105802 2 0 0 0 2 UPB1 chr22:24919741 5'GT 24919741 Upstream 96bp
chr12 6562860 6562860 1 + C G LUSC 6562859 + 6562839 6562879 41 GCTGAACTTGCCACTGAGCCCCCAGGGGACTGTGCGAACTG GCTGAACTTGCCACTGAGCCCGCAGGGGACTGTGCGAACTG < 41bp 0.455838958207109 0.764473226937275 0.1325325 0.3198914 prediction 0.52894645387455 Functional Gain - TAPBPL ENSG00000139192 CDS Human protein_coding chr12:6562859 chr12:6562860 synonymous SNV . 0 22 hm5C_associated_SNPs_105803 0 0 0 0 1 TAPBPL chr12:6562882 5'GT 6562882 Upstream 23bp
chr22 39078362 39078362 1 + T C COAD 39078360 + 39078340 39078380 41 CTGTCGGAGAGACTATGGGGCCTGACGGAGATGTTTCCGGA CTGTCGGAGAGACTATGGGGCCCGACGGAGATGTTTCCGGA < 41bp 0.505125799319525 0.769591369605911 0.12300384 0.08196348 prediction 0.528931140572774 Functional Gain - TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078360 chr22:39078362 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_105806 0 0 1 0 2 TOMM22 chr22:39078328 3'AG 39078328 Downstream 35bp
chr22 39078362 39078362 1 + T C COAD 39078360 + 39078340 39078380 41 CTGTCGGAGAGACTATGGGGCCTGACGGAGATGTTTCCGGA CTGTCGGAGAGACTATGGGGCCCGACGGAGATGTTTCCGGA < 41bp 0.505125799319525 0.769591369605911 0.12300384 0.08196348 prediction 0.528931140572774 Functional Gain - TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078360 chr22:39078362 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_105806 0 0 1 0 2 TOMM22 chr22:39078446 5'GT 39078446 Upstream 85bp
chr16 30012264 30012264 1 + C G rs138024392 30012263 + 30012243 30012283 41 TCTCCAGGAAGAGAAGCCCTCCGCTGGGGGGCGCCCCCTCT TCTCCAGGAAGAGAAGCCCTCGGCTGGGGGGCGCCCCCTCT < 41bp 0.454691916057667 0.764454526563413 0.41069052 0.8942504 prediction 0.528909053126827 Functional Gain - INO80E ENSG00000169592 CDS Human protein_coding chr16:30012263 chr16:30012264 nonsynonymous SNV 0.967 1 22 hm5C_associated_SNPs_105807 0 0 1 0 2 INO80E chr16:30012250 3'AG 30012250 Downstream 15bp
chr16 30012264 30012264 1 + C G rs138024392 30012263 + 30012243 30012283 41 TCTCCAGGAAGAGAAGCCCTCCGCTGGGGGGCGCCCCCTCT TCTCCAGGAAGAGAAGCCCTCGGCTGGGGGGCGCCCCCTCT < 41bp 0.454691916057667 0.764454526563413 0.41069052 0.8942504 prediction 0.528909053126827 Functional Gain - INO80E ENSG00000169592 CDS Human protein_coding chr16:30012263 chr16:30012264 nonsynonymous SNV 0.967 1 22 hm5C_associated_SNPs_105807 0 0 1 0 2 INO80E chr16:30012361 5'GT 30012361 Upstream 98bp
chr19 4233189 4233189 1 + C G LUSC 4233185 + 4233165 4233205 41 GCAGCAGACGCCAACGTCCACCAGCTGCACCATCACGGATG GCAGCAGACGCCAACGTCCACCAGGTGCACCATCACGGATG < 41bp 0.530047056303973 0.794501571282417 0.73066115 0.9189974 prediction 0.528909029956887 Functional Gain - EBI3 ENSG00000105246 CDS Human protein_coding chr19:4233185 chr19:4233189 nonsynonymous SNV 0.172 0 25 hm5C_associated_SNPs_105808 0 0 0 0 1 EBI3 chr19:4233126 3'AG 4233126 Downstream 64bp
chr15 23261774 23261774 1 + C A BLCA 23261770 + 23261750 23261790 41 CTTCCTTTCTCAGCTGAACCCTTGCCCCCGGAGCCCCCAGC CTTCCTTTCTCAGCTGAACCCTTGACCCCGGAGCCCCCAGC < 41bp 0.360578099698443 0.764454231144429 0.18637234 0.2964723 prediction 0.528908462288858 Functional Gain - GOLGA8IP ENSG00000153666 CDS Human other chr15:23261770 chr15:23261774 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_105809 0 0 0 0 1 GOLGA8IP chr15:23261763 3'AG 23261763 Downstream 12bp
chr1 236368452 236368452 1 + T C UCEC 236368450 + 236368430 236368470 41 ACCCTGGAATGGTCCCCAGCCATGGATTCAGTCCCAGATCT ACCCTGGAATGGTCCCCAGCCACGGATTCAGTCCCAGATCT < 41bp 0.516565241772716 0.781015674799602 0.17713737 0.15227231 prediction 0.528900866053773 Functional Gain - GPR137B ENSG00000077585 CDS Human protein_coding chr1:236368450 chr1:236368452 synonymous SNV . 0 23 hm5C_associated_SNPs_105811 0 0 1 1 1 GPR137B chr1:236368426 3'AG 236368426 Downstream 27bp
chr20 30602798 30602798 1 + C A UCEC 30602794 + 30602774 30602814 41 GCGTGAGCCGCCGGCCCCTGCACTCGATGCCCCTTTATCCC GCGTGAGCCGCCGGCCCCTGCACTAGATGCCCCTTTATCCC < 41bp 0.344433936832611 0.764446905584859 0.25569558 0.08471352 prediction 0.528893811169719 Functional Gain - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30602794 chr20:30602798 stopgain 0.886 1 25 hm5C_associated_SNPs_105812 0 0 0 0 2 CCM2L chr20:30602707 3'AG 30602707 Downstream 92bp
chr20 30602798 30602798 1 + C A UCEC 30602794 + 30602774 30602814 41 GCGTGAGCCGCCGGCCCCTGCACTCGATGCCCCTTTATCCC GCGTGAGCCGCCGGCCCCTGCACTAGATGCCCCTTTATCCC < 41bp 0.344433936832611 0.764446905584859 0.25569558 0.08471352 prediction 0.528893811169719 Functional Gain - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30602794 chr20:30602798 stopgain 0.886 1 25 hm5C_associated_SNPs_105812 0 0 0 0 2 CCM2L chr20:30602874 5'GT 30602874 Upstream 77bp
chr22 29688151 29688151 1 + T G COAD 29688149 + 29688129 29688169 41 CCATGGATGAAGGACCAGATCTTGATCTAGGTAATTTTGAA CCATGGATGAAGGACCAGATCTGGATCTAGGTAATTTTGAA < 41bp 0.451720245824195 0.76442338448965 0.18211159 0.26798028 prediction 0.5288467689793 Functional Gain - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29688149 chr22:29688151 synonymous SNV . 0 23 hm5C_associated_SNPs_105814 0 0 1 0 2 EWSR1 chr22:29688126 3'AG 29688126 Downstream 26bp
chr22 29688151 29688151 1 + T G COAD 29688149 + 29688129 29688169 41 CCATGGATGAAGGACCAGATCTTGATCTAGGTAATTTTGAA CCATGGATGAAGGACCAGATCTGGATCTAGGTAATTTTGAA < 41bp 0.451720245824195 0.76442338448965 0.18211159 0.26798028 prediction 0.5288467689793 Functional Gain - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29688149 chr22:29688151 synonymous SNV . 0 23 hm5C_associated_SNPs_105814 0 0 1 0 2 EWSR1 chr22:29688158 5'GT 29688158 Upstream 8bp
chr19 41758814 41758814 1 + T C STAD 41758812 + 41758792 41758832 41 CCTGTGGTCATCTTACCTTTCATGAAACATGGAGACCTACA CCTGTGGTCATCTTACCTTTCACGAAACATGGAGACCTACA < 41bp 0.477397148394443 0.764408937828974 0.08557576 0.08108854 prediction 0.528817875657949 Functional Gain - AXL ENSG00000167601 CDS Human protein_coding chr19:41758812 chr19:41758814 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_105818 0 0 0 0 2 AXL chr19:41758751 3'AG 41758751 Downstream 64bp
chr19 41758814 41758814 1 + T C STAD 41758812 + 41758792 41758832 41 CCTGTGGTCATCTTACCTTTCATGAAACATGGAGACCTACA CCTGTGGTCATCTTACCTTTCACGAAACATGGAGACCTACA < 41bp 0.477397148394443 0.764408937828974 0.08557576 0.08108854 prediction 0.528817875657949 Functional Gain - AXL ENSG00000167601 CDS Human protein_coding chr19:41758812 chr19:41758814 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_105818 0 0 0 0 2 AXL chr19:41758872 5'GT 41758872 Upstream 59bp
chr2 73452826 73452826 1 + T C STAD 73452824 + 73452804 73452844 41 CGCCACAGCCGCCACAAGATCCTCAGGTGCCAGCTGGGGAC CGCCACAGCCGCCACAAGATCCCCAGGTGCCAGCTGGGGAC < 41bp 0.486739049963533 0.764392896234256 0.10493052 0.21246082 prediction 0.528785792468512 Functional Gain - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73452824 chr2:73452826 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_105819 0 0 1 2 2 SMYD5 chr2:73452759 3'AG 73452759 Downstream 68bp
chr2 73452826 73452826 1 + T C STAD 73452824 + 73452804 73452844 41 CGCCACAGCCGCCACAAGATCCTCAGGTGCCAGCTGGGGAC CGCCACAGCCGCCACAAGATCCCCAGGTGCCAGCTGGGGAC < 41bp 0.486739049963533 0.764392896234256 0.10493052 0.21246082 prediction 0.528785792468512 Functional Gain - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73452824 chr2:73452826 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_105819 0 0 1 2 2 SMYD5 chr2:73452829 5'GT 73452829 Upstream 4bp
chr3 183824114 183824114 1 + C A LUSC 183824110 + 183824090 183824130 41 AGGAAAATAAGGGCCCGGGTCTCACCCCCACCCACCTGCCC AGGAAAATAAGGGCCCGGGTCTCAACCCCACCCACCTGCCC < 41bp 0.35756956697233 0.764391626485646 0.15008256 0.20048538 prediction 0.528783252971293 Functional Gain - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183824110 chr3:183824114 nonsynonymous SNV 0.085 1 25 hm5C_associated_SNPs_105820 0 0 0 0 1 HTR3E chr3:183824131 5'GT 183824131 Upstream 18bp
chr2 102626044 102626044 1 + T A BRCA 102626040 + 102626020 102626060 41 TCAGGGGCTGCCAGAAGCTGCCGGTTTCGTGGGAGGCATTA TCAGGGGCTGCCAGAAGCTGCCGGATTCGTGGGAGGCATTA < 41bp 0.566333485674803 0.830724856049362 0.8827021 0.9053315 prediction 0.528782740749118 Functional Gain - IL1R2 ENSG00000115590 CDS Human protein_coding chr2:102626040 chr2:102626044 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_105821 0 0 0 0 1 IL1R2 chr2:102626024 3'AG 102626024 Downstream 21bp
chr15 25462398 25462398 1 + C G rs138778105 25462397 + 25462377 25462417 41 AGATGTGTGGGACCCGCAGGCCGAGGGCCAGTGTCTCTCAG AGATGTGTGGGACCCGCAGGCGGAGGGCCAGTGTCTCTCAG < 41bp 0.478982233746949 0.764368890476961 0.89065266 0.9221419 prediction 0.528737780953922 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25462397 chr15:25462398 . . 0 22 hm5C_associated_SNPs_105823 0 0 0 0 2 SNHG14 chr15:25462360 3'AG 25462360 Downstream 39bp
chr15 25462398 25462398 1 + C G rs138778105 25462397 + 25462377 25462417 41 AGATGTGTGGGACCCGCAGGCCGAGGGCCAGTGTCTCTCAG AGATGTGTGGGACCCGCAGGCGGAGGGCCAGTGTCTCTCAG < 41bp 0.478982233746949 0.764368890476961 0.89065266 0.9221419 prediction 0.528737780953922 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25462397 chr15:25462398 . . 0 22 hm5C_associated_SNPs_105823 0 0 0 0 2 SNHG14 chr15:25462489 5'GT 25462489 Upstream 92bp
chr7 89859252 89859252 1 + T A OV 89859248 + 89859228 89859268 41 TGGAGAATTGAAATGTATATCTCCTTTGGCATAATGAGCCT TGGAGAATTGAAATGTATATCTCCATTGGCATAATGAGCCT < 41bp 0.609344901324187 0.873710382650069 0.4360374 0.96682405 prediction 0.528730962651764 Functional Gain - STEAP2 ENSG00000157214 CDS Human protein_coding chr7:89859248 chr7:89859252 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_105824 0 0 0 0 2 STEAP2 chr7:89859186 3'AG 89859186 Downstream 67bp
chr7 89859252 89859252 1 + T A OV 89859248 + 89859228 89859268 41 TGGAGAATTGAAATGTATATCTCCTTTGGCATAATGAGCCT TGGAGAATTGAAATGTATATCTCCATTGGCATAATGAGCCT < 41bp 0.609344901324187 0.873710382650069 0.4360374 0.96682405 prediction 0.528730962651764 Functional Gain - STEAP2 ENSG00000157214 CDS Human protein_coding chr7:89859248 chr7:89859252 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_105824 0 0 0 0 2 STEAP2 chr7:89859350 5'GT 89859350 Upstream 99bp
chr2 98349621 98349621 1 + C G LGG 98349617 + 98349597 98349637 41 TATCTGAAGCTGAAGGCGGACGGGCTCATCTACTGCCTGAA TATCTGAAGCTGAAGGCGGACGGGGTCATCTACTGCCTGAA < 41bp 0.547268205244102 0.811631942565886 0.8546208 0.9086462 prediction 0.528727474643569 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98349617 chr2:98349621 nonsynonymous SNV 0.911 4 25 hm5C_associated_SNPs_105826 0 0 1 0 2 ZAP70 chr2:98349588 3'AG 98349588 Downstream 34bp
chr2 98349621 98349621 1 + C G LGG 98349617 + 98349597 98349637 41 TATCTGAAGCTGAAGGCGGACGGGCTCATCTACTGCCTGAA TATCTGAAGCTGAAGGCGGACGGGGTCATCTACTGCCTGAA < 41bp 0.547268205244102 0.811631942565886 0.8546208 0.9086462 prediction 0.528727474643569 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98349617 chr2:98349621 nonsynonymous SNV 0.911 4 25 hm5C_associated_SNPs_105826 0 0 1 0 2 ZAP70 chr2:98349675 5'GT 98349675 Upstream 55bp
chr10 115657951 115657951 1 + C G OV 115657947 + 115657927 115657967 41 ATGGGCACTCCTGCTGGACTCTGGCAAACTGCCAAAGAAAA ATGGGCACTCCTGCTGGACTCTGGGAAACTGCCAAAGAAAA < 41bp 0.490526617288794 0.764363538680856 0.07086137 0.23353514 prediction 0.528727077361711 Functional Gain - NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115657947 chr10:115657951 synonymous SNV . 0 25 hm5C_associated_SNPs_105827 0 0 1 0 2 NHLRC2 chr10:115657869 3'AG 115657869 Downstream 83bp
chr10 115657951 115657951 1 + C G OV 115657947 + 115657927 115657967 41 ATGGGCACTCCTGCTGGACTCTGGCAAACTGCCAAAGAAAA ATGGGCACTCCTGCTGGACTCTGGGAAACTGCCAAAGAAAA < 41bp 0.490526617288794 0.764363538680856 0.07086137 0.23353514 prediction 0.528727077361711 Functional Gain - NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115657947 chr10:115657951 synonymous SNV . 0 25 hm5C_associated_SNPs_105827 0 0 1 0 2 NHLRC2 chr10:115657968 5'GT 115657968 Upstream 18bp
chr12 7031945 7031945 1 + T C UCEC 7031943 + 7031923 7031963 41 GCTTTGCCGGACATAACTTCCGTAATCCCAGTGTGCTGTGA GCTTTGCCGGACATAACTTCCGCAATCCCAGTGTGCTGTGA < 41bp 0.506012120647015 0.770371808011658 0.45634666 0.30449823 prediction 0.528719374729287 Functional Gain - ENO2 ENSG00000111674 CDS Human protein_coding chr12:7031943 chr12:7031945 synonymous SNV . 0 23 hm5C_associated_SNPs_105828 0 0 1 0 1 ENO2 chr12:7031894 3'AG 7031894 Downstream 52bp
chr6 109575765 109575765 1 + C G rs140450056 109575761 + 109575741 109575781 41 CGACGCCCGAGGTTTGATCTCAGCCACCCCTATTTCATTAA CGACGCCCGAGGTTTGATCTCAGCGACCCCTATTTCATTAA < 41bp 0.557420927213551 0.821763293160257 0.21564877 0.59646404 prediction 0.52868473189341 Functional Gain - C6orf183 ENSG00000243587;ENSG00000233908 intergenic Human other chr6:109575761 chr6:109575765 . . 0 25 hm5C_associated_SNPs_105829 0 0 0 0 1 C6orf183 chr6:109575851 5'GT 109575851 Upstream 87bp
chr11 550192 550192 1 + C A rs61736743 550188 + 550168 550208 41 GACCTGGGGCAGGTGCGCTACTTGCAGCTGTGCCCACGCCT GACCTGGGGCAGGTGCGCTACTTGAAGCTGTGCCCACGCCT < 41bp 0.34489202012879 0.764318465884665 0.19519237 0.23767692 prediction 0.528636931769329 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:550188 chr11:550192 nonsynonymous SNV 0.555 0 25 hm5C_associated_SNPs_105833 0 0 0 0 1 LRRC56 chr11:550272 5'GT 550272 Upstream 81bp
chr12 6559495 6559495 1 + C A HNSC 6559491 + 6559471 6559511 41 AGGCCCTGAGCCCACACCCTCAGCCCACCCACTTACCTTAT AGGCCCTGAGCCCACACCCTCAGCACACCCACTTACCTTAT < 41bp 0.348968441619666 0.764309394860643 0.87135863 0.7714267 prediction 0.528618789721287 Functional Gain - CD27 ENSG00000139193 CDS Human protein_coding chr12:6559491 chr12:6559495 nonsynonymous SNV 0.848 3 25 hm5C_associated_SNPs_105834 0 0 0 0 1 CD27 chr12:6559518 5'GT 6559518 Upstream 24bp
chr11 60785395 60785395 1 + T G rs148566267 60785393 + 60785373 60785413 41 TCCCAAAAGCAAGCTGCCTCCATGGAACCCCCAGGTGTTTT TCCCAAAAGCAAGCTGCCTCCAGGGAACCCCCAGGTGTTTT < 41bp 0.412146225689932 0.764304319422861 0.104475915 0.5212257 prediction 0.528608638845722 Functional Gain - CD6 ENSG00000013725 CDS Human protein_coding chr11:60785393 chr11:60785395 nonsynonymous SNV 0.371 3 23 hm5C_associated_SNPs_105838 0 0 0 0 1 CD6 chr11:60785485 5'GT 60785485 Upstream 91bp
chr7 100609871 100609871 1 + C A UCEC 100609867 + 100609847 100609887 41 GGAAGTCGTGGGCACTTTTTCAAACTGGGGTTTCGAGGACG GGAAGTCGTGGGCACTTTTTCAAAATGGGGTTTCGAGGACG < 41bp 0.386795997221295 0.764296081166681 0.8865952 0.8764402 prediction 0.528592162333362 Functional Gain - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100609867 chr7:100609871 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_105842 0 0 0 0 2 MUC3A chr7:100609805 3'AG 100609805 Downstream 67bp
chr7 100609871 100609871 1 + C A UCEC 100609867 + 100609847 100609887 41 GGAAGTCGTGGGCACTTTTTCAAACTGGGGTTTCGAGGACG GGAAGTCGTGGGCACTTTTTCAAAATGGGGTTTCGAGGACG < 41bp 0.386795997221295 0.764296081166681 0.8865952 0.8764402 prediction 0.528592162333362 Functional Gain - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100609867 chr7:100609871 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_105842 0 0 0 0 2 MUC3A chr7:100609896 5'GT 100609896 Upstream 26bp
chr2 215440491 215440491 1 + T A LUAD 215440487 + 215440467 215440507 41 TGTCATTGTCACAACGGGGACTGGTGGAAGCCTGCTCAGTG TGTCATTGTCACAACGGGGACTGGAGGAAGCCTGCTCAGTG < 41bp 0.58271469304381 0.84700760390033 0.3664017 0.40038392 prediction 0.528585821713041 Functional Gain - VWC2L ENSG00000174453 CDS Human protein_coding chr2:215440487 chr2:215440491 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_105843 0 0 0 2 1 VWC2L chr2:215440396 3'AG 215440396 Downstream 96bp
chr14 77857396 77857396 1 + T G PAAD 77857394 + 77857374 77857414 41 GCTCCTGGAAATTGAAGAGCCATTATTCAAACGCTCCATCA GCTCCTGGAAATTGAAGAGCCAGTATTCAAACGCTCCATCA < 41bp 0.434755467224202 0.764284620625455 0.91644067 0.91012025 prediction 0.52856924125091 Functional Gain - SAMD15 ENSG00000100583 CDS Human protein_coding chr14:77857394 chr14:77857396 nonsynonymous SNV 0.833 0 23 hm5C_associated_SNPs_105845 0 0 0 0 1 SAMD15 chr14:77857351 3'AG 77857351 Downstream 46bp
chr11 73681103 73681103 1 + C T SKCM 73681102 + 73681082 73681122 41 ATCTTCTTCGACATCCAGTTCCCCACCCGCCTCACACCCCA ATCTTCTTCGACATCCAGTTCTCCACCCGCCTCACACCCCA < 41bp 0.496780933527615 0.764272981285751 0.021033466 0.91406715 prediction 0.528545962571502 Functional Gain - DNAJB13 ENSG00000187726 CDS Human protein_coding chr11:73681102 chr11:73681103 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_105847 0 0 0 0 1 DNAJB13 chr11:73681006 3'AG 73681006 Downstream 98bp
chr4 71066250 71066250 1 + T G OV 71066248 + 71066228 71066268 41 TCCAGTTTACATGGTCCTACCCTGGGAACAACCTCAGCAAA TCCAGTTTACATGGTCCTACCCGGGGAACAACCTCAGCAAA < 41bp 0.4204835527757 0.764239859180366 0.14021629 0.925274 prediction 0.528479718360732 Functional Gain - ODAM ENSG00000109205 CDS Human protein_coding chr4:71066248 chr4:71066250 nonsynonymous SNV 0.985 2 23 hm5C_associated_SNPs_105850 0 0 1 0 2 ODAM chr4:71066214 3'AG 71066214 Downstream 37bp
chr4 71066250 71066250 1 + T G OV 71066248 + 71066228 71066268 41 TCCAGTTTACATGGTCCTACCCTGGGAACAACCTCAGCAAA TCCAGTTTACATGGTCCTACCCGGGGAACAACCTCAGCAAA < 41bp 0.4204835527757 0.764239859180366 0.14021629 0.925274 prediction 0.528479718360732 Functional Gain - ODAM ENSG00000109205 CDS Human protein_coding chr4:71066248 chr4:71066250 nonsynonymous SNV 0.985 2 23 hm5C_associated_SNPs_105850 0 0 1 0 2 ODAM chr4:71066318 5'GT 71066318 Upstream 69bp
chr2 32891790 32891790 1 + T A UCEC 32891786 + 32891766 32891806 41 AAGGGAAGGGGATGTCCTTTCAAATTGTGAATTCACTCCAG AAGGGAAGGGGATGTCCTTTCAAAATGTGAATTCACTCCAG < 41bp 0.580108618292434 0.844324002363044 0.38068935 0.47001815 prediction 0.528430768141219 Functional Gain - TTC27 ENSG00000018699 CDS Human protein_coding chr2:32891786 chr2:32891790 nonsynonymous SNV 0.655 0 25 hm5C_associated_SNPs_105851 0 0 1 0 1 TTC27 chr2:32891702 3'AG 32891702 Downstream 89bp
chr17 48050587 48050587 1 + C A SARC 48050583 + 48050563 48050603 41 AGCACACGCAGTACCTGGCGCTGCCCGAGAGGGCCCAGCTG AGCACACGCAGTACCTGGCGCTGCACGAGAGGGCCCAGCTG < 41bp 0.339307810832092 0.764180838139602 0.15430856 0.2532493 prediction 0.528361676279205 Functional Gain - DLX4 ENSG00000108813 CDS Human protein_coding chr17:48050583 chr17:48050587 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_105852 0 0 0 0 1 DLX4 chr17:48050633 5'GT 48050633 Upstream 47bp
chr11 134147681 134147681 1 + C A rs191037370 134147677 + 134147657 134147697 41 AAGCACAGGTCGGGGTAAGCCCCACTTCACACTGGAGGGCC AAGCACAGGTCGGGGTAAGCCCCAATTCACACTGGAGGGCC < 41bp 0.341694169433817 0.764176933838252 0.2063779 0.117486775 prediction 0.528353867676504 Functional Gain - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134147677 chr11:134147681 nonsynonymous SNV 0.198 1 25 hm5C_associated_SNPs_105853 0 0 0 0 1 GLB1L3 chr11:134147594 3'AG 134147594 Downstream 88bp
chr17 1675210 1675210 1 + T C HNSC 1675208 + 1675188 1675228 41 TGTGGCACCTCTGGAAAAGTCATATGGGACCAGGCCCAGAG TGTGGCACCTCTGGAAAAGTCACATGGGACCAGGCCCAGAG < 41bp 0.502497203587321 0.766638913288779 0.23028195 0.24208137 prediction 0.528283419402916 Functional Gain - SERPINF1 ENSG00000132386 CDS Human protein_coding chr17:1675208 chr17:1675210 nonsynonymous SNV 0.825 5 23 hm5C_associated_SNPs_105854 0 0 1 0 1 SERPINF1 chr17:1675166 3'AG 1675166 Downstream 45bp
chr20 21312419 21312419 1 + T C UCEC 21312417 + 21312397 21312437 41 CTTGTTTAGCCCAGCCTAACCATGACCCAAATACTCATCAT CTTGTTTAGCCCAGCCTAACCACGACCCAAATACTCATCAT < 41bp 0.494324193679538 0.764123268551391 0.09182575 0.11150196 prediction 0.528246537102781 Functional Gain - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21312417 chr20:21312419 synonymous SNV . 0 23 hm5C_associated_SNPs_105856 0 0 1 0 2 XRN2 chr20:21312406 3'AG 21312406 Downstream 14bp
chr20 21312419 21312419 1 + T C UCEC 21312417 + 21312397 21312437 41 CTTGTTTAGCCCAGCCTAACCATGACCCAAATACTCATCAT CTTGTTTAGCCCAGCCTAACCACGACCCAAATACTCATCAT < 41bp 0.494324193679538 0.764123268551391 0.09182575 0.11150196 prediction 0.528246537102781 Functional Gain - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21312417 chr20:21312419 synonymous SNV . 0 23 hm5C_associated_SNPs_105856 0 0 1 0 2 XRN2 chr20:21312456 5'GT 21312456 Upstream 38bp
chr16 28592408 28592408 1 + C G LUSC 28592404 + 28592384 28592424 41 GTAGACAATGGCCCTCGTGTCTGCCGATTCCCGCATTGCAG GTAGACAATGGCCCTCGTGTCTGCGGATTCCCGCATTGCAG < 41bp 0.483029909426518 0.764123136831411 0.20835835 0.22806859 prediction 0.528246273662822 Functional Gain - SGF29 ENSG00000176476 CDS Human protein_coding chr16:28592404 chr16:28592408 synonymous SNV . 0 25 hm5C_associated_SNPs_105857 0 0 1 0 2 SGF29 chr16:28592376 3'AG 28592376 Downstream 33bp
chr16 28592408 28592408 1 + C G LUSC 28592404 + 28592384 28592424 41 GTAGACAATGGCCCTCGTGTCTGCCGATTCCCGCATTGCAG GTAGACAATGGCCCTCGTGTCTGCGGATTCCCGCATTGCAG < 41bp 0.483029909426518 0.764123136831411 0.20835835 0.22806859 prediction 0.528246273662822 Functional Gain - SGF29 ENSG00000176476 CDS Human protein_coding chr16:28592404 chr16:28592408 synonymous SNV . 0 25 hm5C_associated_SNPs_105857 0 0 1 0 2 SGF29 chr16:28592465 5'GT 28592465 Upstream 58bp
chr15 91503669 91503669 1 + C A SKCM 91503665 + 91503645 91503685 41 CCTTCCCGGCATTACTGGATCTCCCCATGGGCTCAGATGCA CCTTCCCGGCATTACTGGATCTCCACATGGGCTCAGATGCA < 41bp 0.321280447031091 0.764122316192715 0.035774678 0.9450819 prediction 0.528244632385429 Functional Gain - RCCD1 ENSG00000166965 CDS Human protein_coding chr15:91503665 chr15:91503669 nonsynonymous SNV 0.820 3 25 hm5C_associated_SNPs_105858 0 0 1 0 1 RCCD1 chr15:91503728 5'GT 91503728 Upstream 60bp
chr2 241513949 241513949 1 + C A UCEC 241513945 + 241513925 241513965 41 CATCCAGGTGCTGCCTTCACCTGCCTGGAGACTGCCTTCCG CATCCAGGTGCTGCCTTCACCTGCATGGAGACTGCCTTCCG < 41bp 0.657805270479278 0.9219151855419 0.43563402 0.6395654 prediction 0.528219830125244 Functional Gain - RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241513945 chr2:241513949 nonsynonymous SNV 0.985 4 25 hm5C_associated_SNPs_105860 0 0 1 0 2 RNPEPL1 chr2:241513932 3'AG 241513932 Downstream 18bp
chr2 241513949 241513949 1 + C A UCEC 241513945 + 241513925 241513965 41 CATCCAGGTGCTGCCTTCACCTGCCTGGAGACTGCCTTCCG CATCCAGGTGCTGCCTTCACCTGCATGGAGACTGCCTTCCG < 41bp 0.657805270479278 0.9219151855419 0.43563402 0.6395654 prediction 0.528219830125244 Functional Gain - RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241513945 chr2:241513949 nonsynonymous SNV 0.985 4 25 hm5C_associated_SNPs_105860 0 0 1 0 2 RNPEPL1 chr2:241514045 5'GT 241514045 Upstream 97bp
chr20 31673913 31673913 1 + T A LUSC 31673909 + 31673889 31673929 41 TGGACCGCACGGGTTATCCTCGGCTGGTCATTGAGCGATGT TGGACCGCACGGGTTATCCTCGGCAGGTCATTGAGCGATGT < 41bp 0.599374243020355 0.863468056825424 0.3505005 0.49137324 prediction 0.528187627610137 Functional Gain - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31673909 chr20:31673913 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_105863 0 0 0 0 1 BPIFB4 chr20:31673827 3'AG 31673827 Downstream 87bp
chr12 64825398 64825398 1 + C A PRAD 64825394 + 64825374 64825414 41 AAGTTTATCTGGACTGTTTACAGACATTCTTGCCAGCCCTC AAGTTTATCTGGACTGTTTACAGAAATTCTTGCCAGCCCTC < 41bp 0.360917072871844 0.764091103100579 0.5122695 0.4178269 prediction 0.528182206201158 Functional Gain - XPOT ENSG00000184575 CDS Human protein_coding chr12:64825394 chr12:64825398 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_105864 0 0 1 0 1 XPOT chr12:64825318 3'AG 64825318 Downstream 81bp
chr21 45094963 45094963 1 + T C UCEC 45094961 + 45094941 45094981 41 TGATGAAGGAGGTCCTGTGTCCTGAGAGTCAGTCTCCTAAT TGATGAAGGAGGTCCTGTGTCCCGAGAGTCAGTCTCCTAAT < 41bp 0.527785465419799 0.79187555756426 0.22412938 0.25688243 prediction 0.52818018428892 Functional Gain - RRP1B ENSG00000160208 CDS Human protein_coding chr21:45094961 chr21:45094963 synonymous SNV . 0 23 hm5C_associated_SNPs_105865 0 0 1 0 2 RRP1B chr21:45094915 3'AG 45094915 Downstream 49bp
chr21 45094963 45094963 1 + T C UCEC 45094961 + 45094941 45094981 41 TGATGAAGGAGGTCCTGTGTCCTGAGAGTCAGTCTCCTAAT TGATGAAGGAGGTCCTGTGTCCCGAGAGTCAGTCTCCTAAT < 41bp 0.527785465419799 0.79187555756426 0.22412938 0.25688243 prediction 0.52818018428892 Functional Gain - RRP1B ENSG00000160208 CDS Human protein_coding chr21:45094961 chr21:45094963 synonymous SNV . 0 23 hm5C_associated_SNPs_105865 0 0 1 0 2 RRP1B chr21:45095044 5'GT 45095044 Upstream 82bp
chr13 49854797 49854797 1 + T C COAD 49854795 + 49854775 49854815 41 AAGAAGGCAGACATCTCTTACATGAGGTTCGGGGAGCTTGA AAGAAGGCAGACATCTCTTACACGAGGTTCGGGGAGCTTGA < 41bp 0.5094992489426 0.773588783144715 0.7142871 0.7583307 prediction 0.52817906840423 Functional Gain - CDADC1 ENSG00000102543 CDS Human protein_coding chr13:49854795 chr13:49854797 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_105866 0 0 1 0 1 CDADC1 chr13:49854834 5'GT 49854834 Upstream 38bp
chr5 150843128 150843128 1 + T C UCEC 150843126 + 150843106 150843146 41 CACTTCAGATGGTTCCAGACCTTGATCCACCTGTTAAAAGG CACTTCAGATGGTTCCAGACCTCGATCCACCTGTTAAAAGG < 41bp 0.468587282747897 0.764058131493659 0.11811054 0.643774 prediction 0.528116262987319 Functional Gain - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150843126 chr5:150843128 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_105868 0 0 1 0 2 SLC36A1 chr5:150843114 3'AG 150843114 Downstream 15bp
chr5 150843128 150843128 1 + T C UCEC 150843126 + 150843106 150843146 41 CACTTCAGATGGTTCCAGACCTTGATCCACCTGTTAAAAGG CACTTCAGATGGTTCCAGACCTCGATCCACCTGTTAAAAGG < 41bp 0.468587282747897 0.764058131493659 0.11811054 0.643774 prediction 0.528116262987319 Functional Gain - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150843126 chr5:150843128 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_105868 0 0 1 0 2 SLC36A1 chr5:150843204 5'GT 150843204 Upstream 77bp
chr3 47378198 47378198 1 + C T SKCM 47378197 + 47378177 47378217 41 AGCACTGTGGAGGCCTACAACCCGGAGACAGACACATGGAC AGCACTGTGGAGGCCTACAACTCGGAGACAGACACATGGAC < 41bp 0.501200640858664 0.765224172608584 0.41567558 0.7432828 prediction 0.528047063499839 Functional Gain - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47378197 chr3:47378198 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_105872 0 0 1 0 1 KLHL18 chr3:47378247 5'GT 47378247 Upstream 50bp
chr1 228353822 228353822 1 + T G DLBC 228353820 + 228353800 228353840 41 GGCTACGCCCACTTCCTGAACGTGCAGGGCCGGACGCTCTA GGCTACGCCCACTTCCTGAACGGGCAGGGCCGGACGCTCTA < 41bp 0.414751730355017 0.764011633471724 0.23031649 0.7245055 prediction 0.528023266943447 Functional Gain - IBA57 ENSG00000181873 CDS Human protein_coding chr1:228353820 chr1:228353822 nonsynonymous SNV 0.987 2 23 hm5C_associated_SNPs_105873 0 0 1 0 1 IBA57 chr1:228353858 5'GT 228353858 Upstream 37bp
chr4 100756879 100756879 1 + C A rs199971263 100756875 + 100756855 100756895 41 TCTGAGGGACAGCAATGAGACCACCGGGCTGTACTCTCTCT TCTGAGGGACAGCAATGAGACCACAGGGCTGTACTCTCTCT < 41bp 0.350906627527093 0.764006073146433 0.09581402 0.18131602 prediction 0.528012146292865 Functional Gain - DAPP1 ENSG00000070190 CDS Human protein_coding chr4:100756875 chr4:100756879 synonymous SNV . 0 25 hm5C_associated_SNPs_105874 0 0 0 0 2 DAPP1 chr4:100756780 3'AG 100756780 Downstream 100bp
chr4 100756879 100756879 1 + C A rs199971263 100756875 + 100756855 100756895 41 TCTGAGGGACAGCAATGAGACCACCGGGCTGTACTCTCTCT TCTGAGGGACAGCAATGAGACCACAGGGCTGTACTCTCTCT < 41bp 0.350906627527093 0.764006073146433 0.09581402 0.18131602 prediction 0.528012146292865 Functional Gain - DAPP1 ENSG00000070190 CDS Human protein_coding chr4:100756875 chr4:100756879 synonymous SNV . 0 25 hm5C_associated_SNPs_105874 0 0 0 0 2 DAPP1 chr4:100756902 5'GT 100756902 Upstream 24bp
chr14 24624527 24624527 1 + C A UCEC 24624523 + 24624503 24624543 41 ACAGTTGCTCAGCTACTTCTCTACCCTTGACATCCAGGTAC ACAGTTGCTCAGCTACTTCTCTACACTTGACATCCAGGTAC < 41bp 0.339352251580385 0.764005371708405 0.21449298 0.18133679 prediction 0.528010743416809 Functional Gain - RNF31 ENSG00000092098;ENSG00000259529 CDS Human other chr14:24624523 chr14:24624527 synonymous SNV . 0 25 hm5C_associated_SNPs_105875 0 0 1 1 1 RNF31 chr14:24624539 5'GT 24624539 Upstream 13bp
chr20 17950744 17950744 1 + C G rs150656271 17950743 + 17950723 17950763 41 AAGATGCTTTGCTCTGTGGACCCGTGAGCAAGCATAAGCTG AAGATGCTTTGCTCTGTGGACGCGTGAGCAAGCATAAGCTG < 41bp 0.571965343355701 0.835957307054396 0.100393206 0.40272552 prediction 0.527983927397391 Functional Gain - MGME1 ENSG00000125871 CDS Human protein_coding chr20:17950743 chr20:17950744 nonsynonymous SNV 0.110 2 22 hm5C_associated_SNPs_105876 0 0 1 2 1 MGME1 chr20:17950773 5'GT 17950773 Upstream 30bp
chr3 147130396 147130396 1 + C A LUAD 147130392 + 147130372 147130412 41 GAAGCACATGCACGTGCACACGAGCGACAAGCCCTATCTTT GAAGCACATGCACGTGCACACGAGAGACAAGCCCTATCTTT < 41bp 0.64905592881495 0.913016396731511 0.38158453 0.7830308 prediction 0.527920935833122 Functional Gain - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147130392 chr3:147130396 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_105879 0 0 0 0 2 ZIC1 chr3:147130305 3'AG 147130305 Downstream 92bp
chr3 147130396 147130396 1 + C A LUAD 147130392 + 147130372 147130412 41 GAAGCACATGCACGTGCACACGAGCGACAAGCCCTATCTTT GAAGCACATGCACGTGCACACGAGAGACAAGCCCTATCTTT < 41bp 0.64905592881495 0.913016396731511 0.38158453 0.7830308 prediction 0.527920935833122 Functional Gain - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147130392 chr3:147130396 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_105879 0 0 0 0 2 ZIC1 chr3:147130468 5'GT 147130468 Upstream 73bp
chr12 110924406 110924406 1 + T G rs146589900 110924403 + 110924383 110924423 41 CAGAAACAGCATTACCCTTGCACTACATGGCGACATCAACT CAGAAACAGCATTACCCTTGCACGACATGGCGACATCAACT < 41bp 0.381715433095086 0.763953242796532 0.37783125 0.11582336 prediction 0.527906485593064 Functional Gain - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110924403 chr12:110924406 synonymous SNV . 0 24 hm5C_associated_SNPs_105880 0 0 1 6 1 FAM216A chr12:110924339 3'AG 110924339 Downstream 68bp
chr17 73746787 73746787 1 + C G rs141513851 73746786 + 73746766 73746806 41 GTACTGGATTCAGGGTGACTCCGAATCCGAAGCCCACCTGC GTACTGGATTCAGGGTGACTCGGAATCCGAAGCCCACCTGC < 41bp 0.455370249154898 0.763951877817987 0.8413031 0.941963 prediction 0.527903755635974 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73746786 chr17:73746787 synonymous SNV . 0 22 hm5C_associated_SNPs_105881 0 0 0 0 1 ITGB4 chr17:73746761 3'AG 73746761 Downstream 27bp
chrX 105179199 105179199 1 + T A LUAD 105179195 + 105179175 105179215 41 CGTAGAAGTACCTGAGGAATCACCTAAGCAACCCTCTGAAG CGTAGAAGTACCTGAGGAATCACCAAAGCAACCCTCTGAAG < 41bp 0.433920575368643 0.763939050603773 0.15099812 0.20125905 prediction 0.527878101207546 Functional Gain - NRK ENSG00000123572 CDS Human protein_coding chrX:105179195 chrX:105179199 synonymous SNV . 0 25 hm5C_associated_SNPs_105883 0 0 0 0 1 NRK chrX:105179162 3'AG 105179162 Downstream 38bp
chr9 137777172 137777172 1 + C A UCEC 137777168 + 137777148 137777188 41 ACCTGCCCGACTGCCGGCCCCTGACTGTGCTCTGTGACATG ACCTGCCCGACTGCCGGCCCCTGAATGTGCTCTGTGACATG < 41bp 0.342317722034754 0.763924896831819 0.008539498 0.10433841 prediction 0.527849793663638 Functional Gain - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137777168 chr9:137777172 nonsynonymous SNV 0.728 0 25 hm5C_associated_SNPs_105885 0 0 0 0 2 FCN2 chr9:137777085 3'AG 137777085 Downstream 88bp
chr9 137777172 137777172 1 + C A UCEC 137777168 + 137777148 137777188 41 ACCTGCCCGACTGCCGGCCCCTGACTGTGCTCTGTGACATG ACCTGCCCGACTGCCGGCCCCTGAATGTGCTCTGTGACATG < 41bp 0.342317722034754 0.763924896831819 0.008539498 0.10433841 prediction 0.527849793663638 Functional Gain - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137777168 chr9:137777172 nonsynonymous SNV 0.728 0 25 hm5C_associated_SNPs_105885 0 0 0 0 2 FCN2 chr9:137777212 5'GT 137777212 Upstream 41bp
chr3 128623263 128623263 1 + T C LUAD 128623261 + 128623241 128623281 41 CTGATGGCTCAGAAGGCTTACGTCATGGAGAGTATGACCTA CTGATGGCTCAGAAGGCTTACGCCATGGAGAGTATGACCTA < 41bp 0.55108288754059 0.814988047331662 0.022086263 0.0131106675 prediction 0.527810319582145 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128623261 chr3:128623263 nonsynonymous SNV 0.924 1 23 hm5C_associated_SNPs_105887 0 0 1 3 2 ACAD9 chr3:128623229 3'AG 128623229 Downstream 35bp
chr3 128623263 128623263 1 + T C LUAD 128623261 + 128623241 128623281 41 CTGATGGCTCAGAAGGCTTACGTCATGGAGAGTATGACCTA CTGATGGCTCAGAAGGCTTACGCCATGGAGAGTATGACCTA < 41bp 0.55108288754059 0.814988047331662 0.022086263 0.0131106675 prediction 0.527810319582145 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128623261 chr3:128623263 nonsynonymous SNV 0.924 1 23 hm5C_associated_SNPs_105887 0 0 1 3 2 ACAD9 chr3:128623348 5'GT 128623348 Upstream 86bp
chr1 244541927 244541927 1 + C A SKCM 244541923 + 244541903 244541943 41 CTTACCGACGAGACTATTCTCTGCCATTTTATGAGATTGGT CTTACCGACGAGACTATTCTCTGCAATTTTATGAGATTGGT < 41bp 0.351590157567394 0.76390118452275 0.2459735 0.40228993 prediction 0.5278023690455 Functional Gain - C1orf100 ENSG00000173728 CDS Human protein_coding chr1:244541923 chr1:244541927 nonsynonymous SNV 0.403 4 25 hm5C_associated_SNPs_105888 0 0 0 0 2 C1orf100 chr1:244541865 3'AG 244541865 Downstream 63bp
chr1 244541927 244541927 1 + C A SKCM 244541923 + 244541903 244541943 41 CTTACCGACGAGACTATTCTCTGCCATTTTATGAGATTGGT CTTACCGACGAGACTATTCTCTGCAATTTTATGAGATTGGT < 41bp 0.351590157567394 0.76390118452275 0.2459735 0.40228993 prediction 0.5278023690455 Functional Gain - C1orf100 ENSG00000173728 CDS Human protein_coding chr1:244541923 chr1:244541927 nonsynonymous SNV 0.403 4 25 hm5C_associated_SNPs_105888 0 0 0 0 2 C1orf100 chr1:244541941 5'GT 244541941 Upstream 15bp
chr2 242128089 242128089 1 + C G PRAD 242128088 + 242128068 242128108 41 ACCCCTCCCCACCCTCTGTCCCGCAGTGAGGACGGGACTCT ACCCCTCCCCACCCTCTGTCCGGCAGTGAGGACGGGACTCT < 41bp 0.569800257591556 0.833700096634818 0.3098557 0.38458997 prediction 0.527799678086525 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242128088 chr2:242128089 synonymous SNV . 0 22 hm5C_associated_SNPs_105889 0 0 0 0 1 ANO7 chr2:242128181 5'GT 242128181 Upstream 93bp
chr10 94834785 94834785 1 + T G COAD 94834782 + 94834762 94834802 41 TCGAGGAAATGACCCGCAATCTCTTCTCGCTGCCCATCGAC TCGAGGAAATGACCCGCAATCTCGTCTCGCTGCCCATCGAC < 41bp 0.642151654263401 0.90602908968284 0.04647699 0.087388664 prediction 0.527754870838877 Functional Gain - CYP26A1 ENSG00000095596 CDS Human protein_coding chr10:94834782 chr10:94834785 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_105890 0 0 0 0 1 CYP26A1 chr10:94834826 5'GT 94834826 Upstream 42bp
chr4 170634350 170634350 1 + T C STAD 170634348 + 170634328 170634368 41 AAGCTTCGAAGCATTCTTGACATGAGCCCTTTTACAGTGAC AAGCTTCGAAGCATTCTTGACACGAGCCCTTTTACAGTGAC < 41bp 0.475660915669641 0.763873869902944 0.14335313 0.117841065 prediction 0.527747739805889 Functional Gain - CLCN3 ENSG00000109572 CDS Human protein_coding chr4:170634348 chr4:170634350 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_105892 0 0 1 0 1 CLCN3 chr4:170634446 5'GT 170634446 Upstream 97bp
chr1 17714924 17714924 1 + C G OV 17714920 + 17714900 17714940 41 TGGTGCTGGGGCCCGACCAGCACGCCTATACCTTGGCCCTC TGGTGCTGGGGCCCGACCAGCACGGCTATACCTTGGCCCTC < 41bp 0.546732380407591 0.810534635543021 0.4182406 0.81224227 prediction 0.527604510270859 Functional Gain - PADI6 ENSG00000256049 ncRNA_exonic Human other chr1:17714920 chr1:17714924 . 0.001 0 25 hm5C_associated_SNPs_105897 0 0 0 0 1 PADI6 chr1:17714876 3'AG 17714876 Downstream 49bp
chr13 45589616 45589616 1 + C G rs151309735 45589615 + 45589595 45589635 41 CATGGATGACTGAACTTCCTCCAGAAATGAAAGACTTTGGT CATGGATGACTGAACTTCCTCGAGAAATGAAAGACTTTGGT < 41bp 0.552507557259999 0.816295527536065 0.040456444 0.4679585 prediction 0.527575940552132 Functional Gain - GPALPP1 ENSG00000133114 CDS Human protein_coding chr13:45589615 chr13:45589616 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_105900 0 0 1 0 1 GPALPP1 chr13:45589567 3'AG 45589567 Downstream 50bp
chr11 66136939 66136939 1 - G T SARC 66136943 - 66136923 66136963 41 CCAGGATCCTGAGCACCAACCACACGGGTCCCGAGGATGCC CCAGGATCCTGAGCACCAACCACAAGGGTCCCGAGGATGCC < 41bp 0.345023317282961 0.763749110965105 0.27137434 0.30849874 prediction 0.527498221930211 Functional Gain - SLC29A2 ENSG00000174669 CDS Human protein_coding chr11:66136943 chr11:66136939 nonsynonymous SNV 0.584 0 25 hm5C_associated_SNPs_105904 0 0 1 0 2 SLC29A2 chr11:66136840 5'GT 66136840 Upstream 100bp
chr11 66136939 66136939 1 - G T SARC 66136943 - 66136923 66136963 41 CCAGGATCCTGAGCACCAACCACACGGGTCCCGAGGATGCC CCAGGATCCTGAGCACCAACCACAAGGGTCCCGAGGATGCC < 41bp 0.345023317282961 0.763749110965105 0.27137434 0.30849874 prediction 0.527498221930211 Functional Gain - SLC29A2 ENSG00000174669 CDS Human protein_coding chr11:66136943 chr11:66136939 nonsynonymous SNV 0.584 0 25 hm5C_associated_SNPs_105904 0 0 1 0 2 SLC29A2 chr11:66137003 3'AG 66137003 Downstream 65bp
chr4 122737590 122737590 1 + C G BRCA 122737589 + 122737569 122737609 41 TTTTGGAACCAGACAAGAATCCAAAGAAAATAAGGTAACAA TTTTGGAACCAGACAAGAATCGAAAGAAAATAAGGTAACAA < 41bp 0.484393150501878 0.763747852162775 0.36267498 0.8543769 prediction 0.52749570432555 Functional Gain - EXOSC9 ENSG00000123737 CDS Human protein_coding chr4:122737589 chr4:122737590 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_105905 0 0 1 0 2 EXOSC9 chr4:122737524 3'AG 122737524 Downstream 67bp
chr4 122737590 122737590 1 + C G BRCA 122737589 + 122737569 122737609 41 TTTTGGAACCAGACAAGAATCCAAAGAAAATAAGGTAACAA TTTTGGAACCAGACAAGAATCGAAAGAAAATAAGGTAACAA < 41bp 0.484393150501878 0.763747852162775 0.36267498 0.8543769 prediction 0.52749570432555 Functional Gain - EXOSC9 ENSG00000123737 CDS Human protein_coding chr4:122737589 chr4:122737590 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_105905 0 0 1 0 2 EXOSC9 chr4:122737602 5'GT 122737602 Upstream 13bp
chr11 22363231 22363231 1 + T A SKCM 22363227 + 22363207 22363247 41 GCCATCATGAGCGGCCTGGGCTTCTGCATCTCCTTCGGTAT GCCATCATGAGCGGCCTGGGCTTCAGCATCTCCTTCGGTAT < 41bp 0.427867779051989 0.763708045643843 0.058689 0.07748273 prediction 0.527416091287686 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22363227 chr11:22363231 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_105911 0 0 0 0 1 SLC17A6 chr11:22363326 5'GT 22363326 Upstream 96bp
chr1 78280876 78280876 1 + C A COAD 78280872 + 78280852 78280892 41 TCTCCAAGAGGAGTTTGAAGCTACCCTTGGGGCATCTGATC TCTCCAAGAGGAGTTTGAAGCTACACTTGGGGCATCTGATC < 41bp 0.354406020212495 0.763694693734448 0.021249712 0.024710357 prediction 0.527389387468896 Functional Gain - MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78280872 chr1:78280876 synonymous SNV . 0 25 hm5C_associated_SNPs_105912 0 0 1 0 2 MIGA1 chr1:78280793 3'AG 78280793 Downstream 84bp
chr1 78280876 78280876 1 + C A COAD 78280872 + 78280852 78280892 41 TCTCCAAGAGGAGTTTGAAGCTACCCTTGGGGCATCTGATC TCTCCAAGAGGAGTTTGAAGCTACACTTGGGGCATCTGATC < 41bp 0.354406020212495 0.763694693734448 0.021249712 0.024710357 prediction 0.527389387468896 Functional Gain - MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78280872 chr1:78280876 synonymous SNV . 0 25 hm5C_associated_SNPs_105912 0 0 1 0 2 MIGA1 chr1:78280916 5'GT 78280916 Upstream 41bp
chr20 42695394 42695394 1 + C T SKCM 42695393 + 42695373 42695413 41 TTCCCGCACATCTCTGAGTTCCCCAGCAGCTCGGGATCCTG TTCCCGCACATCTCTGAGTTCTCCAGCAGCTCGGGATCCTG < 41bp 0.525438777128275 0.789109305531638 0.14896634 0.9515064 prediction 0.527341056806725 Functional Gain - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695393 chr20:42695394 nonsynonymous SNV 0.931 0 22 hm5C_associated_SNPs_105914 0 0 0 0 1 TOX2 chr20:42695370 3'AG 42695370 Downstream 25bp
chr14 93282672 93282672 1 + T C STAD 93282670 + 93282650 93282690 41 GATAGCAGCACTGCCAGTAGCATGGAGCTGGAAGAACTTCG GATAGCAGCACTGCCAGTAGCACGGAGCTGGAAGAACTTCG < 41bp 0.516374994376561 0.780034178951488 0.77512676 0.62463033 prediction 0.527318369149855 Functional Gain - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93282670 chr14:93282672 nonsynonymous SNV 0.779 1 23 hm5C_associated_SNPs_105917 0 0 1 0 2 GOLGA5 chr14:93282596 3'AG 93282596 Downstream 77bp
chr14 93282672 93282672 1 + T C STAD 93282670 + 93282650 93282690 41 GATAGCAGCACTGCCAGTAGCATGGAGCTGGAAGAACTTCG GATAGCAGCACTGCCAGTAGCACGGAGCTGGAAGAACTTCG < 41bp 0.516374994376561 0.780034178951488 0.77512676 0.62463033 prediction 0.527318369149855 Functional Gain - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93282670 chr14:93282672 nonsynonymous SNV 0.779 1 23 hm5C_associated_SNPs_105917 0 0 1 0 2 GOLGA5 chr14:93282766 5'GT 93282766 Upstream 95bp
chr16 77246517 77246517 1 + C A rs62049594 77246513 + 77246493 77246533 41 TTCGGGGAGCAGGTCCGGAGCGCCCCCGAGGTCGGGGCCGG TTCGGGGAGCAGGTCCGGAGCGCCACCGAGGTCGGGGCCGG < 41bp 0.64888537229651 0.912537179446012 0.1377672 0.27055797 prediction 0.527303614299004 Functional Gain - SYCE1L ENSG00000205078 CDS Human protein_coding chr16:77246513 chr16:77246517 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_105918 0 0 0 0 2 SYCE1L chr16:77246471 3'AG 77246471 Downstream 47bp
chr16 77246517 77246517 1 + C A rs62049594 77246513 + 77246493 77246533 41 TTCGGGGAGCAGGTCCGGAGCGCCCCCGAGGTCGGGGCCGG TTCGGGGAGCAGGTCCGGAGCGCCACCGAGGTCGGGGCCGG < 41bp 0.64888537229651 0.912537179446012 0.1377672 0.27055797 prediction 0.527303614299004 Functional Gain - SYCE1L ENSG00000205078 CDS Human protein_coding chr16:77246513 chr16:77246517 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_105918 0 0 0 0 2 SYCE1L chr16:77246543 5'GT 77246543 Upstream 27bp
chr15 41145816 41145816 1 + C A rs149720019 41145812 + 41145792 41145832 41 ACAGTCACTGTGCTGTCCACCAAGCAGACAGAAGGTGAGGG ACAGTCACTGTGCTGTCCACCAAGAAGACAGAAGGTGAGGG < 41bp 0.362080559023315 0.763651320247388 0.09296286 0.059714705 prediction 0.527302640494775 Functional Gain - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41145812 chr15:41145816 nonsynonymous SNV 0.974 4 25 hm5C_associated_SNPs_105919 0 0 0 0 1 SPINT1 chr15:41145825 5'GT 41145825 Upstream 10bp
chr19 47858603 47858603 1 + T G rs542850010 47858601 + 47858581 47858621 41 GTGCCTGGGAGGCTGTTCCCCATCACGGTGAGTACTTCCCC GTGCCTGGGAGGCTGTTCCCCAGCACGGTGAGTACTTCCCC < 41bp 0.414931305471598 0.763624978707385 0.15406588 0.20969635 prediction 0.527249957414769 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47858601 chr19:47858603 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_105924 0 0 1 0 1 DHX34 chr19:47858607 5'GT 47858607 Upstream 5bp
chr16 57722303 57722303 1 + C A THCA 57722299 + 57722279 57722319 41 GCTGGTTCACCATCCTTTACCTCCCAAGTCAGAGCACCACA GCTGGTTCACCATCCTTTACCTCCAAAGTCAGAGCACCACA < 41bp 0.335661979113311 0.763620422625066 0.0054450333 0.9420277 prediction 0.527240845250133 Functional Gain - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57722299 chr16:57722303 nonsynonymous SNV 0.373 2 25 hm5C_associated_SNPs_105925 0 0 0 0 1 ADGRG3 chr16:57722264 3'AG 57722264 Downstream 40bp
chr11 18362844 18362844 1 + T C COAD 18362842 + 18362822 18362862 41 GCAGAAAATGTTCCCCACAACATGACAGAGAAGGAATTCTG GCAGAAAATGTTCCCCACAACACGACAGAGAAGGAATTCTG < 41bp 0.531992025164645 0.795590203874131 0.034637034 0.05520922 prediction 0.527196357418972 Functional Gain - GTF2H1 ENSG00000110768 CDS Human protein_coding chr11:18362842 chr11:18362844 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_105929 0 0 1 0 1 GTF2H1 chr11:18362808 3'AG 18362808 Downstream 37bp
chr2 66691322 66691322 1 + T C COAD 66691320 + 66691300 66691340 41 CCCTTCCAGCGGTGGCCACACGTCACACAGTGGGGACAACA CCCTTCCAGCGGTGGCCACACGCCACACAGTGGGGACAACA < 41bp 0.479312532625326 0.763588085664325 0.021641284 0.032143414 prediction 0.52717617132865 Functional Gain - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66691320 chr2:66691322 nonsynonymous SNV 0.950 4 23 hm5C_associated_SNPs_105931 0 0 0 1 2 MEIS1 chr2:66691241 3'AG 66691241 Downstream 82bp
chr2 66691322 66691322 1 + T C COAD 66691320 + 66691300 66691340 41 CCCTTCCAGCGGTGGCCACACGTCACACAGTGGGGACAACA CCCTTCCAGCGGTGGCCACACGCCACACAGTGGGGACAACA < 41bp 0.479312532625326 0.763588085664325 0.021641284 0.032143414 prediction 0.52717617132865 Functional Gain - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66691320 chr2:66691322 nonsynonymous SNV 0.950 4 23 hm5C_associated_SNPs_105931 0 0 0 1 2 MEIS1 chr2:66691352 5'GT 66691352 Upstream 31bp
chr2 241631698 241631698 1 + C A LUSC 241631694 + 241631674 241631714 41 CTGGCGGCACAGGGGCTGGGCATGCAGGCCGCCTGCACCCT CTGGCGGCACAGGGGCTGGGCATGAAGGCCGCCTGCACCCT < 41bp 0.381035461816174 0.763584472041749 0.49641308 0.61853844 prediction 0.527168944083497 Functional Gain - AQP12A ENSG00000184945 CDS Human protein_coding chr2:241631694 chr2:241631698 nonsynonymous SNV 0.057 0 25 hm5C_associated_SNPs_105934 0 0 0 0 1 AQP12A chr2:241631629 3'AG 241631629 Downstream 70bp
chr1 11345737 11345737 1 + T C PRAD 11345735 + 11345715 11345755 41 TACGTGGCTCTGGGAGACCTCATCATCCTCATCACTTTTGG TACGTGGCTCTGGGAGACCTCACCATCCTCATCACTTTTGG < 41bp 0.516572621840038 0.780149830154342 0.089080274 0.15682769 prediction 0.527154416628608 Functional Gain - UBIAD1 ENSG00000120942 CDS Human protein_coding chr1:11345735 chr1:11345737 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_105936 0 0 1 0 1 UBIAD1 chr1:11345701 3'AG 11345701 Downstream 37bp
chr9 140135797 140135797 1 + C A rs556036177 140135793 + 140135773 140135813 41 GTCTACTTCCTCCTGCTTCCCCGCCGCCGCCGCCGCCATCA GTCTACTTCCTCCTGCTTCCCCGCAGCCGCCGCCGCCATCA < 41bp 0.411691195174464 0.763567468116158 0.123748094 0.18926468 prediction 0.527134936232316 Functional Gain - TUBB4B ENSG00000188229 UTR5 Human protein_coding chr9:140135793 chr9:140135797 . . 0 25 hm5C_associated_SNPs_105938 0 0 1 0 1 TUBB4B chr9:140135869 5'GT 140135869 Upstream 73bp
chr11 71498591 71498591 1 + C A rs12270466 71498587 + 71498567 71498607 41 AGGCCCCGCCCCCGTCATGGCGCCCGAGGAGAACGCGGGGA AGGCCCCGCCCCCGTCATGGCGCCAGAGGAGAACGCGGGGA < 41bp 0.643740432223493 0.907253875145331 0.24733192 0.39479294 prediction 0.527026885843677 Functional Gain - FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71498587 chr11:71498591 synonymous SNV . 0 25 hm5C_associated_SNPs_105946 0 0 1 0 1 FAM86C1 chr11:71498678 5'GT 71498678 Upstream 88bp
chr2 219301940 219301940 1 + C A BRCA 219301936 + 219301916 219301956 41 TACCTCAAGACCCATCCCAGCGGGCGTGACCCTGAGACCCC TACCTCAAGACCCATCCCAGCGGGAGTGACCCTGAGACCCC < 41bp 0.654324521045179 0.917837746344045 0.8783414 0.8898562 prediction 0.527026450597733 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219301936 chr2:219301940 nonsynonymous SNV 0.020 4 25 hm5C_associated_SNPs_105947 0 0 1 0 1 VIL1 chr2:219301847 3'AG 219301847 Downstream 94bp
chr17 7317995 7317995 1 + C G rs567010279 7317994 + 7317974 7318014 41 ACTCCCAGGTTTTCTCAGCACCGGGGACCAGGCTGCAAAAG ACTCCCAGGTTTTCTCAGCACGGGGGACCAGGCTGCAAAAG < 41bp 0.589921481345055 0.853430043060676 0.21432775 0.77207625 prediction 0.527017123431242 Functional Gain - NLGN2 ENSG00000169992 CDS Human protein_coding chr17:7317994 chr17:7317995 synonymous SNV . 0 22 hm5C_associated_SNPs_105949 0 0 1 0 1 NLGN2 chr17:7317982 3'AG 7317982 Downstream 14bp
chr1 64676469 64676469 1 + C A UCEC 64676465 + 64676445 64676485 41 CCCTGTATAGACTTTTTGGACAACCCTGAGAAGTGGAATAC CCCTGTATAGACTTTTTGGACAACACTGAGAAGTGGAATAC < 41bp 0.355399217162783 0.763496567067521 0.17839447 0.24530378 prediction 0.526993134135042 Functional Gain - UBE2U ENSG00000177414 CDS Human protein_coding chr1:64676465 chr1:64676469 nonsynonymous SNV 0.014 0 25 hm5C_associated_SNPs_105951 0 0 0 0 2 UBE2U chr1:64676425 3'AG 64676425 Downstream 45bp
chr1 64676469 64676469 1 + C A UCEC 64676465 + 64676445 64676485 41 CCCTGTATAGACTTTTTGGACAACCCTGAGAAGTGGAATAC CCCTGTATAGACTTTTTGGACAACACTGAGAAGTGGAATAC < 41bp 0.355399217162783 0.763496567067521 0.17839447 0.24530378 prediction 0.526993134135042 Functional Gain - UBE2U ENSG00000177414 CDS Human protein_coding chr1:64676465 chr1:64676469 nonsynonymous SNV 0.014 0 25 hm5C_associated_SNPs_105951 0 0 0 0 2 UBE2U chr1:64676522 5'GT 64676522 Upstream 54bp
chr5 137222944 137222944 1 + T A LUSC 137222940 + 137222920 137222960 41 TTCCAGCTCCTAAGCAGTTACGGGTTCGACCAACATTCAGC TTCCAGCTCCTAAGCAGTTACGGGATCGACCAACATTCAGC < 41bp 0.572553292147074 0.836033098586944 0.04654482 0.5001109 prediction 0.526959612879739 Functional Gain - MYOT ENSG00000120729 CDS Human protein_coding chr5:137222940 chr5:137222944 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_105954 0 0 0 0 1 MYOT chr5:137222902 3'AG 137222902 Downstream 43bp
chr9 138441760 138441760 1 + C A rs7859414 138441756 + 138441736 138441776 41 GGACCACCTGGACCTACCCTCCAGCCATGACCCTTCCCTGC GGACCACCTGGACCTACCCTCCAGACATGACCCTTCCCTGC < 41bp 0.385843669609467 0.763472641228086 0.29847735 0.30813217 prediction 0.526945282456171 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138441756 chr9:138441760 nonsynonymous SNV 0.019 1 25 hm5C_associated_SNPs_105956 0 0 0 0 1 OBP2A chr9:138441683 3'AG 138441683 Downstream 78bp
chr20 4680118 4680118 1 + T C rs62637686 4680116 + 4680096 4680136 41 ATGGTGGTGGCTGGGGACAGCCTCATGGTGGTGGCTGGGGT ATGGTGGTGGCTGGGGACAGCCCCATGGTGGTGGCTGGGGT < 41bp 0.496695971338244 0.763437848261705 0.17577133 0.24634749 prediction 0.526875696523411 Functional Gain - PRNP ENSG00000171867 CDS Human protein_coding chr20:4680116 chr20:4680118 synonymous SNV . 0 23 hm5C_associated_SNPs_105957 1 0 1 0 1 PRNP chr20:4680125 5'GT 4680125 Upstream 8bp
chrX 12735195 12735195 1 + C A LGG 12735191 + 12735171 12735211 41 CTGGATAATGCCGTCGTCTCCACGCTGGGAGCTCTAGAGGC CTGGATAATGCCGTCGTCTCCACGATGGGAGCTCTAGAGGC < 41bp 0.399821411585642 0.763423114372845 0.8676912 0.5824135 prediction 0.526846228745689 Functional Gain - FRMPD4 ENSG00000169933 CDS Human protein_coding chrX:12735191 chrX:12735195 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_105962 0 0 1 0 1 FRMPD4 chrX:12735252 5'GT 12735252 Upstream 58bp
chr19 10157078 10157078 1 + C G rs374079030 10157077 + 10157057 10157097 41 AAGTGCTGTGAGGCTGGGCTCCGGGAGAGCCCAGTGGGGCT AAGTGCTGTGAGGCTGGGCTCGGGGAGAGCCCAGTGGGGCT < 41bp 0.555546847605922 0.818958931526666 0.88281834 0.9164377 prediction 0.526824167841489 Functional Gain - C3P1 ENSG00000167798 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:10157077 chr19:10157078 . . 0 22 hm5C_associated_SNPs_105963 0 0 0 0 1 C3P1 chr19:10157028 3'AG 10157028 Downstream 51bp
chr19 17875233 17875233 1 + C G rs145154295 17875229 + 17875209 17875249 41 AAGGCGATGGCGAAACTCTCCAAGCTGGCCAGCAACGGGAC AAGGCGATGGCGAAACTCTCCAAGGTGGCCAGCAACGGGAC < 41bp 0.548139870802683 0.811532502171239 0.37643588 0.86531824 prediction 0.526785262737113 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17875229 chr19:17875233 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_105965 0 0 1 0 2 FCHO1 chr19:17875184 3'AG 17875184 Downstream 50bp
chr19 17875233 17875233 1 + C G rs145154295 17875229 + 17875209 17875249 41 AAGGCGATGGCGAAACTCTCCAAGCTGGCCAGCAACGGGAC AAGGCGATGGCGAAACTCTCCAAGGTGGCCAGCAACGGGAC < 41bp 0.548139870802683 0.811532502171239 0.37643588 0.86531824 prediction 0.526785262737113 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17875229 chr19:17875233 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_105965 0 0 1 0 2 FCHO1 chr19:17875258 5'GT 17875258 Upstream 26bp
chr12 50367274 50367274 1 + C A LUAD 50367270 + 50367250 50367290 41 CCGTGCTGTGGCCTATGTGGCTGCCCAGCTGGTGGGGGCCA CCGTGCTGTGGCCTATGTGGCTGCACAGCTGGTGGGGGCCA < 41bp 0.353436788110914 0.763379018944948 0.13933086 0.19898856 prediction 0.526758037889896 Functional Gain - AQP6 ENSG00000086159 CDS Human protein_coding chr12:50367270 chr12:50367274 synonymous SNV . 0 25 hm5C_associated_SNPs_105966 0 0 0 0 1 AQP6 chr12:50367358 5'GT 50367358 Upstream 85bp
chr6 160221773 160221773 1 + C G SKCM 160221772 + 160221752 160221792 41 GTGCTGGCGATGTTCTGCACCCGAGGACTGCTATTTTTTGC GTGCTGGCGATGTTCTGCACCGGAGGACTGCTATTTTTTGC < 41bp 0.450516387859965 0.763370291659401 0.33077526 0.82465196 prediction 0.526740583318803 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160221772 chr6:160221773 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_105967 0 0 1 0 2 PNLDC1 chr6:160221705 3'AG 160221705 Downstream 69bp
chr6 160221773 160221773 1 + C G SKCM 160221772 + 160221752 160221792 41 GTGCTGGCGATGTTCTGCACCCGAGGACTGCTATTTTTTGC GTGCTGGCGATGTTCTGCACCGGAGGACTGCTATTTTTTGC < 41bp 0.450516387859965 0.763370291659401 0.33077526 0.82465196 prediction 0.526740583318803 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160221772 chr6:160221773 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_105967 0 0 1 0 2 PNLDC1 chr6:160221861 5'GT 160221861 Upstream 89bp
chr7 99661799 99661799 1 + C A GBM 99661795 + 99661775 99661815 41 CCTCACCCTCCACTACAGAACACACTTGGTGGACCGGCCCT CCTCACCCTCCACTACAGAACACAATTGGTGGACCGGCCCT < 41bp 0.359408984191013 0.763368996459964 0.07997203 0.10956004 prediction 0.526737992919928 Functional Gain - ZSCAN21 ENSG00000166529 CDS Human protein_coding chr7:99661795 chr7:99661799 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_105968 0 0 1 0 1 ZSCAN21 chr7:99661706 3'AG 99661706 Downstream 94bp
chr5 1242943 1242943 1 + C G STAD 1242942 + 1242922 1242962 41 AAGAGGGTGGCCCAGCTCCCCCTGAAGGCCTGCCTCCTGGA AAGAGGGTGGCCCAGCTCCCCGTGAAGGCCTGCCTCCTGGA < 41bp 0.580344503909912 0.843707937736355 0.059267968 0.28909165 prediction 0.526726867652887 Functional Gain - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1242942 chr5:1242943 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_105969 0 0 0 0 1 SLC6A18 chr5:1242978 5'GT 1242978 Upstream 36bp
chr14 19574244 19574244 1 + C G rs199722113 19574240 + 19574220 19574260 41 ATATGGGATTCCCAGAAAACCTGCCTAACGGTGCCACTGCT ATATGGGATTCCCAGAAAACCTGCGTAACGGTGCCACTGCT < 41bp 0.472821538236747 0.763348028672967 0.19638127 0.24396959 prediction 0.526696057345934 Functional Gain - POTEG ENSG00000222036 CDS Human protein_coding chr14:19574240 chr14:19574244 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_105972 0 0 0 2 1 POTEG chr14:19574186 3'AG 19574186 Downstream 59bp
chr1 64680517 64680517 1 + T G BLCA 64680514 + 64680494 64680534 41 ATAGGTTATGCTTTCTAATCCAGTGCTAGAGAATCCAGTGA ATAGGTTATGCTTTCTAATCCAGGGCTAGAGAATCCAGTGA < 41bp 0.382913478085085 0.763320782899374 0.15126678 0.39601558 prediction 0.526641565798749 Functional Gain - UBE2U ENSG00000177414 CDS Human protein_coding chr1:64680514 chr1:64680517 nonsynonymous SNV 0.396 0 24 hm5C_associated_SNPs_105975 0 0 0 0 2 UBE2U chr1:64680498 3'AG 64680498 Downstream 20bp
chr1 64680517 64680517 1 + T G BLCA 64680514 + 64680494 64680534 41 ATAGGTTATGCTTTCTAATCCAGTGCTAGAGAATCCAGTGA ATAGGTTATGCTTTCTAATCCAGGGCTAGAGAATCCAGTGA < 41bp 0.382913478085085 0.763320782899374 0.15126678 0.39601558 prediction 0.526641565798749 Functional Gain - UBE2U ENSG00000177414 CDS Human protein_coding chr1:64680514 chr1:64680517 nonsynonymous SNV 0.396 0 24 hm5C_associated_SNPs_105975 0 0 0 0 2 UBE2U chr1:64680615 5'GT 64680615 Upstream 99bp
chr17 30781528 30781528 1 + T C STAD 30781526 + 30781506 30781546 41 CCTACAGAGCTTGGAGGACTCCTGAAGTATGTACGACCCTT CCTACAGAGCTTGGAGGACTCCCGAAGTATGTACGACCCTT < 41bp 0.526824111448971 0.790125119042577 0.62878454 0.58197784 prediction 0.526602015187212 Functional Gain - PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30781526 chr17:30781528 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_105976 0 0 1 0 1 PSMD11 chr17:30781513 3'AG 30781513 Downstream 16bp
chr10 86012658 86012658 1 + T C UCEC 86012656 + 86012636 86012676 41 GCCGTCTCTCTGGTGCTCTTCGTGTGGCTGTCTTCTGCCTT GCCGTCTCTCTGGTGCTCTTCGCGTGGCTGTCTTCTGCCTT < 41bp 0.49703702487948 0.763278534442088 0.664932 0.68607926 prediction 0.526557068884176 Functional Gain - RGR ENSG00000148604 CDS Human protein_coding chr10:86012656 chr10:86012658 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_105982 0 0 0 0 1 RGR chr10:86012613 3'AG 86012613 Downstream 46bp
chr18 77137316 77137316 1 + C A THCA 77137312 + 77137292 77137332 41 CGATCACCGTGGTCAGCTGCCTCCCGCTGTATGTCCTCAAG CGATCACCGTGGTCAGCTGCCTCCAGCTGTATGTCCTCAAG < 41bp 0.372930044115047 0.763252215705601 0.05790767 0.90541434 prediction 0.526504431411203 Functional Gain - ATP9B ENSG00000166377 CDS Human protein_coding chr18:77137312 chr18:77137316 nonsynonymous SNV 0.559 3 25 hm5C_associated_SNPs_105984 0 0 0 0 1 ATP9B chr18:77137247 3'AG 77137247 Downstream 70bp
chr7 100263784 100263784 1 + C G rs10953300 100263783 + 100263763 100263803 41 TACCTGGGCCTCCTAAACTGCCGGGATTACAGGCGTGAGCC TACCTGGGCCTCCTAAACTGCGGGGATTACAGGCGTGAGCC < 41bp 0.473599352353076 0.763246858695622 0.90755975 0.91785514 prediction 0.526493717391244 Functional Gain - LOC105375429 ENSG00000077080;ENSG00000172354 intergenic Human other chr7:100263783 chr7:100263784 . . 0 22 hm5C_associated_SNPs_105986 0 0 0 0 1 LOC105375429 chr7:100263725 3'AG 100263725 Downstream 60bp
chr7 19184555 19184555 1 + C A LUAD 19184551 + 19184531 19184571 41 AAGGAGATATAGACGATGGCCAGGCGGAGGGTCTCGATCCG AAGGAGATATAGACGATGGCCAGGAGGAGGGTCTCGATCCG < 41bp 0.636230578858031 0.899454190459605 0.8867936 0.9040452 prediction 0.526447223203147 Functional Gain - FERD3L ENSG00000146618 CDS Human protein_coding chr7:19184551 chr7:19184555 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_105989 0 0 0 0 1 FERD3L chr7:19184510 3'AG 19184510 Downstream 46bp
chr15 69652438 69652438 1 + C T SKCM 69652437 + 69652417 69652457 41 AAGATGCTGAGCCTGAAGCTCCCCAGGCTGTTTAGCATAGA AAGATGCTGAGCCTGAAGCTCTCCAGGCTGTTTAGCATAGA < 41bp 0.511589950095203 0.774754148594326 0.013529211 0.9442109 prediction 0.526328396998246 Functional Gain - PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69652437 chr15:69652438 nonsynonymous SNV 0.619 4 22 hm5C_associated_SNPs_105999 0 0 0 0 1 PAQR5 chr15:69652470 5'GT 69652470 Upstream 33bp
chr12 106751671 106751671 1 + C G rs144172154 106751667 + 106751647 106751687 41 TCGTGAGCAGCATGGACGTGCTAGCGGAGGAGTTTGGGAAC TCGTGAGCAGCATGGACGTGCTAGGGGAGGAGTTTGGGAAC < 41bp 0.535784337592804 0.798929351758455 0.27727136 0.44236413 prediction 0.526290028331302 Functional Gain - POLR3B ENSG00000013503 CDS Human protein_coding chr12:106751667 chr12:106751671 nonsynonymous SNV 0.798 0 25 hm5C_associated_SNPs_106001 0 0 1 0 1 POLR3B chr12:106751729 5'GT 106751729 Upstream 59bp
chr22 45255655 45255655 1 + C A rs114279873 45255651 + 45255631 45255671 41 GTCACTGGCTGCCGCCAGATCTTACGGAGCCTCCCAGAGCA GTCACTGGCTGCCGCCAGATCTTAAGGAGCCTCCCAGAGCA < 41bp 0.347297880053911 0.763139439856803 0.1877181 0.22626936 prediction 0.526278879713605 Functional Gain - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human protein_coding chr22:45255651 chr22:45255655 synonymous SNV . 0 25 hm5C_associated_SNPs_106003 0 0 1 2 3 ARHGAP8;PRR5-ARHGAP8 chr22:45255560 3'AG 45255560 Downstream 96bp
chr22 45255655 45255655 1 + C A rs114279873 45255651 + 45255631 45255671 41 GTCACTGGCTGCCGCCAGATCTTACGGAGCCTCCCAGAGCA GTCACTGGCTGCCGCCAGATCTTAAGGAGCCTCCCAGAGCA < 41bp 0.347297880053911 0.763139439856803 0.1877181 0.22626936 prediction 0.526278879713605 Functional Gain - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45255651 chr22:45255655 synonymous SNV . 0 25 hm5C_associated_SNPs_106003 0 0 1 2 3 ARHGAP8;PRR5-ARHGAP8 chr22:45255611 3'AG 45255611 Downstream 45bp
chr22 45255655 45255655 1 + C A rs114279873 45255651 + 45255631 45255671 41 GTCACTGGCTGCCGCCAGATCTTACGGAGCCTCCCAGAGCA GTCACTGGCTGCCGCCAGATCTTAAGGAGCCTCCCAGAGCA < 41bp 0.347297880053911 0.763139439856803 0.1877181 0.22626936 prediction 0.526278879713605 Functional Gain - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45255651 chr22:45255655 synonymous SNV . 0 25 hm5C_associated_SNPs_106003 0 0 1 2 3 ARHGAP8;PRR5-ARHGAP8 chr22:45255714 5'GT 45255714 Upstream 60bp
chr6 97000466 97000466 1 + C G HNSC 97000462 + 97000442 97000482 41 AGTCCTGTTGTTTCAGTTTTCAACCCACAGCATGCTCCATG AGTCCTGTTGTTTCAGTTTTCAACGCACAGCATGCTCCATG < 41bp 0.492937822574062 0.763137700760409 0.029007971 0.16698796 prediction 0.526275401520818 Functional Gain - UFL1 ENSG00000014123 CDS Human protein_coding chr6:97000462 chr6:97000466 synonymous SNV . 0 25 hm5C_associated_SNPs_106004 0 0 1 0 1 UFL1 chr6:97000538 5'GT 97000538 Upstream 73bp
chr17 38430097 38430097 1 + C T SKCM 38430096 + 38430076 38430116 41 TGCCAGGGATGCTCCCCCTCCCCCACCACCATACCGAATGC TGCCAGGGATGCTCCCCCTCCTCCACCACCATACCGAATGC < 41bp 0.54436697330758 0.807473288531477 0.064520955 0.91336167 prediction 0.526212630447793 Functional Gain - WIPF2 ENSG00000171475 CDS Human protein_coding chr17:38430096 chr17:38430097 synonymous SNV . 0 22 hm5C_associated_SNPs_106011 0 0 1 0 1 WIPF2 chr17:38430042 3'AG 38430042 Downstream 56bp
chr3 189607202 189607202 1 + C G UCEC 189607201 + 189607181 189607221 41 CCCCACCCAGGCACTCCCTCCCCCACTCTCCATGCCATCCA CCCCACCCAGGCACTCCCTCCGCCACTCTCCATGCCATCCA < 41bp 0.460065002494547 0.763104601778124 0.021994025 0.15459615 prediction 0.526209203556247 Functional Gain - TP63 ENSG00000073282 CDS Human protein_coding chr3:189607201 chr3:189607202 synonymous SNV . 0 22 hm5C_associated_SNPs_106012 0 0 0 0 2 TP63 chr3:189607129 3'AG 189607129 Downstream 74bp
chr3 189607202 189607202 1 + C G UCEC 189607201 + 189607181 189607221 41 CCCCACCCAGGCACTCCCTCCCCCACTCTCCATGCCATCCA CCCCACCCAGGCACTCCCTCCGCCACTCTCCATGCCATCCA < 41bp 0.460065002494547 0.763104601778124 0.021994025 0.15459615 prediction 0.526209203556247 Functional Gain - TP63 ENSG00000073282 CDS Human protein_coding chr3:189607201 chr3:189607202 synonymous SNV . 0 22 hm5C_associated_SNPs_106012 0 0 0 0 2 TP63 chr3:189607273 5'GT 189607273 Upstream 72bp
chr22 19467482 19467482 1 + C A rs13447183 19467478 + 19467458 19467498 41 CAGCGCGAGCGCCAGGCGTCCGGCCGCCGTGGCTATGTTCG CAGCGCGAGCGCCAGGCGTCCGGCAGCCGTGGCTATGTTCG < 41bp 0.534838179932368 0.79790602243375 0.74089587 0.84932303 prediction 0.526135685002765 Functional Gain - CDC45 ENSG00000093009 UTR5 Human protein_coding chr22:19467478 chr22:19467482 . . 0 25 hm5C_associated_SNPs_106018 0 0 1 0 2 CDC45 chr22:19467527 5'GT 19467527 Upstream 46bp
chr22 19467482 19467482 1 + C A rs13447183 19467478 + 19467458 19467498 41 CAGCGCGAGCGCCAGGCGTCCGGCCGCCGTGGCTATGTTCG CAGCGCGAGCGCCAGGCGTCCGGCAGCCGTGGCTATGTTCG < 41bp 0.534838179932368 0.79790602243375 0.74089587 0.84932303 prediction 0.526135685002765 Functional Gain - CDC45 ENSG00000093009 UTR5 Human protein_coding chr22:19467478 chr22:19467482 . . 0 25 hm5C_associated_SNPs_106018 0 0 1 0 2 CDC45 chr22:19467542 5'GT 19467542 Upstream 61bp
chr3 186793423 186793423 1 + C A rs7629263 186793419 + 186793399 186793439 41 CCTCCCATCCAAGCGCAAGACTGACGTGTGCTACTACTACC CCTCCCATCCAAGCGCAAGACTGAAGTGTGCTACTACTACC < 41bp 0.351112277946566 0.76304340740556 0.009632587 0.04427281 prediction 0.52608681481112 Functional Gain - ST6GAL1 ENSG00000073849 CDS Human protein_coding chr3:186793419 chr3:186793423 nonsynonymous SNV 0.373 1 25 hm5C_associated_SNPs_106021 0 0 1 0 1 ST6GAL1 chr3:186793350 3'AG 186793350 Downstream 74bp
chr18 47101752 47101752 1 + C G SKCM 47101748 + 47101728 47101768 41 TTCTGCTGCAGGTTTGGATCCTGCCGGGCCCATGTTTGAAG TTCTGCTGCAGGTTTGGATCCTGCGGGGCCCATGTTTGAAG < 41bp 0.480389994422509 0.763026159203373 0.23699465 0.67043525 prediction 0.526052318406746 Functional Gain - LIPG ENSG00000101670 CDS Human protein_coding chr18:47101748 chr18:47101752 synonymous SNV . 0 25 hm5C_associated_SNPs_106022 0 0 0 0 1 LIPG chr18:47101739 3'AG 47101739 Downstream 14bp
chr5 1213683 1213683 1 + C G ESCA 1213679 + 1213659 1213699 41 AATGGCATCGTCTTCCTCTTCACGCCCAACGTAAGTCCCCG AATGGCATCGTCTTCCTCTTCACGGCCAACGTAAGTCCCCG < 41bp 0.551924618829945 0.814930144289933 0.05912435 0.19465142 prediction 0.526011050919978 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1213679 chr5:1213683 nonsynonymous SNV 0.492 4 25 hm5C_associated_SNPs_106023 0 0 0 0 1 SLC6A19 chr5:1213688 5'GT 1213688 Upstream 6bp
chr9 138415126 138415126 1 + C G LUAD 138415122 + 138415102 138415142 41 GAAGGCCGTCCTGGAGAAAACTGACGAGCCGGGAAAATACA GAAGGCCGTCCTGGAGAAAACTGAGGAGCCGGGAAAATACA < 41bp 0.46871885803388 0.763003351670003 0.43272883 0.8667531 prediction 0.526006703340006 Functional Gain - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415122 chr9:138415126 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_106025 0 0 0 0 2 LCN1 chr9:138415078 3'AG 138415078 Downstream 49bp
chr9 138415126 138415126 1 + C G LUAD 138415122 + 138415102 138415142 41 GAAGGCCGTCCTGGAGAAAACTGACGAGCCGGGAAAATACA GAAGGCCGTCCTGGAGAAAACTGAGGAGCCGGGAAAATACA < 41bp 0.46871885803388 0.763003351670003 0.43272883 0.8667531 prediction 0.526006703340006 Functional Gain - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415122 chr9:138415126 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_106025 0 0 0 0 2 LCN1 chr9:138415148 5'GT 138415148 Upstream 23bp
chr12 69783937 69783937 1 + T C rs315121 69783935 + 69783915 69783955 41 TGTTTTCTTTAGTTGCAGAGCTTGAAGTGAAAACCAGAGAA TGTTTTCTTTAGTTGCAGAGCTCGAAGTGAAAACCAGAGAA < 41bp 0.503712664172314 0.76670674593967 0.4604833 0.3338052 prediction 0.525988163534711 Functional Gain - YEATS4 ENSG00000127337 CDS Human protein_coding chr12:69783935 chr12:69783937 synonymous SNV . 0 23 hm5C_associated_SNPs_106027 0 0 1 0 1 YEATS4 chr12:69783927 3'AG 69783927 Downstream 11bp
chr17 57744280 57744280 1 + T C STAD 57744278 + 57744258 57744298 41 TTCAGGTGGCTTCTAAATATCATGAACAACTGTCAACTCAG TTCAGGTGGCTTCTAAATATCACGAACAACTGTCAACTCAG < 41bp 0.526367422341893 0.78933028314166 0.02866584 0.04031983 prediction 0.525925721599533 Functional Gain - CLTC ENSG00000141367 CDS Human protein_coding chr17:57744278 chr17:57744280 synonymous SNV . 0 23 hm5C_associated_SNPs_106034 0 0 1 0 1 CLTC chr17:57744338 5'GT 57744338 Upstream 59bp
chr19 19344695 19344695 1 + C A ESCA 19344694 + 19344674 19344714 41 TAGCTGTGATCAGGGCTTCGCCGGGGAGAACTGTGAGATTG TAGCTGTGATCAGGGCTTCGCAGGGGAGAACTGTGAGATTG < 41bp 0.506290745228312 0.769243495561608 0.9454678 0.9460437 prediction 0.525905500666592 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19344694 chr19:19344695 synonymous SNV . 0 22 hm5C_associated_SNPs_106036 0 0 0 0 2 NCAN chr19:19344598 3'AG 19344598 Downstream 98bp
chr19 19344695 19344695 1 + C A ESCA 19344694 + 19344674 19344714 41 TAGCTGTGATCAGGGCTTCGCCGGGGAGAACTGTGAGATTG TAGCTGTGATCAGGGCTTCGCAGGGGAGAACTGTGAGATTG < 41bp 0.506290745228312 0.769243495561608 0.9454678 0.9460437 prediction 0.525905500666592 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19344694 chr19:19344695 synonymous SNV . 0 22 hm5C_associated_SNPs_106036 0 0 0 0 2 NCAN chr19:19344714 5'GT 19344714 Upstream 20bp
chr12 3701496 3701496 1 + T C COAD 3701494 + 3701474 3701514 41 GAAATCTACGGGACCATATCCATGAAGCCAAATGCCAAAAA GAAATCTACGGGACCATATCCACGAAGCCAAATGCCAAAAA < 41bp 0.54709791965624 0.810015960974221 0.25246644 0.4443303 prediction 0.525836082635962 Functional Gain - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3701494 chr12:3701496 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_106039 0 0 0 4 2 PRMT8 chr12:3701397 3'AG 3701397 Downstream 100bp
chr12 3701496 3701496 1 + T C COAD 3701494 + 3701474 3701514 41 GAAATCTACGGGACCATATCCATGAAGCCAAATGCCAAAAA GAAATCTACGGGACCATATCCACGAAGCCAAATGCCAAAAA < 41bp 0.54709791965624 0.810015960974221 0.25246644 0.4443303 prediction 0.525836082635962 Functional Gain - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3701494 chr12:3701496 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_106039 0 0 0 4 2 PRMT8 chr12:3701518 5'GT 3701518 Upstream 23bp
chr19 7982423 7982423 1 + C G rs189917216 7982419 + 7982399 7982439 41 CAGCGCCGAGGGCCTGGCTGCTGACGGCCCCCACCTGCACA CAGCGCCGAGGGCCTGGCTGCTGAGGGCCCCCACCTGCACA < 41bp 0.504776522477177 0.767684316041033 0.226076 0.4491277 prediction 0.525815587127712 Functional Gain - TGFBR3L ENSG00000260001 CDS Human protein_coding chr19:7982419 chr19:7982423 nonsynonymous SNV 0.066 0 25 hm5C_associated_SNPs_106040 0 0 0 0 1 TGFBR3L chr19:7982484 5'GT 7982484 Upstream 62bp
chr1 18152302 18152302 1 + C G LAML 18152298 + 18152278 18152318 41 TGCATGTCCCATCGGTCCTCCTGGCCGACCAGCTGCAGATG TGCATGTCCCATCGGTCCTCCTGGGCGACCAGCTGCAGATG < 41bp 0.476861792870987 0.762899304064251 0.76664335 0.92805177 prediction 0.525798608128502 Functional Gain - ACTL8 ENSG00000117148 CDS Human protein_coding chr1:18152298 chr1:18152302 nonsynonymous SNV 0.422 2 25 hm5C_associated_SNPs_106043 0 0 0 0 1 ACTL8 chr1:18152262 3'AG 18152262 Downstream 41bp
chr1 179033506 179033506 1 + C A rs143013339 179033502 + 179033482 179033522 41 GTCCCCTTATGACTCTGGCCCGCGCCTCTTGGACATCATTG GTCCCCTTATGACTCTGGCCCGCGACTCTTGGACATCATTG < 41bp 0.348323198611782 0.762896196749769 0.07998443 0.12655637 prediction 0.525792393499537 Functional Gain - FAM20B ENSG00000116199 CDS Human protein_coding chr1:179033502 chr1:179033506 synonymous SNV . 0 25 hm5C_associated_SNPs_106044 0 0 1 0 1 FAM20B chr1:179033440 3'AG 179033440 Downstream 67bp
chr12 125609313 125609313 1 + C G LUAD 125609312 + 125609292 125609332 41 TGGAAGAGAAGGCCATGAAGCCGGGTGAGTGTGCCTCTTCA TGGAAGAGAAGGCCATGAAGCGGGGTGAGTGTGCCTCTTCA < 41bp 0.577548114791905 0.840437268866138 0.9285568 0.952111 prediction 0.525778308148466 Functional Gain - AACS ENSG00000081760 CDS Human protein_coding chr12:125609312 chr12:125609313 nonsynonymous SNV 0.984 4 22 hm5C_associated_SNPs_106045 0 0 1 0 2 AACS chr12:125609251 3'AG 125609251 Downstream 63bp
chr12 125609313 125609313 1 + C G LUAD 125609312 + 125609292 125609332 41 TGGAAGAGAAGGCCATGAAGCCGGGTGAGTGTGCCTCTTCA TGGAAGAGAAGGCCATGAAGCGGGGTGAGTGTGCCTCTTCA < 41bp 0.577548114791905 0.840437268866138 0.9285568 0.952111 prediction 0.525778308148466 Functional Gain - AACS ENSG00000081760 CDS Human protein_coding chr12:125609312 chr12:125609313 nonsynonymous SNV 0.984 4 22 hm5C_associated_SNPs_106045 0 0 1 0 2 AACS chr12:125609315 5'GT 125609315 Upstream 3bp
chr15 41194898 41194898 1 + C G BRCA 41194894 + 41194874 41194914 41 AAGAAGCTGTGGCTGAAGATCGCACGGCACGTGGTGCAGGA AAGAAGCTGTGGCTGAAGATCGCAGGGCACGTGGTGCAGGA < 41bp 0.505008920533339 0.767892464489182 0.19470319 0.77139014 prediction 0.525767087911686 Functional Gain - VPS18 ENSG00000104142 CDS Human protein_coding chr15:41194894 chr15:41194898 nonsynonymous SNV 0.988 2 25 hm5C_associated_SNPs_106046 0 0 0 0 1 VPS18 chr15:41194814 3'AG 41194814 Downstream 85bp
chr16 71950482 71950482 1 + T C LUSC 71950480 + 71950460 71950500 41 GAAGACTACCTCGTGGAGGCCATGGAGATCCTGGAGCTGTA GAAGACTACCTCGTGGAGGCCACGGAGATCCTGGAGCTGTA < 41bp 0.513604253832951 0.77648109968031 0.33539385 0.3324445 prediction 0.525753691694717 Functional Gain - IST1 ENSG00000182149 CDS Human protein_coding chr16:71950480 chr16:71950482 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_106047 0 0 1 0 1 IST1 chr16:71950545 5'GT 71950545 Upstream 64bp
chr17 6799971 6799971 1 + T G OV 6799968 + 6799948 6799988 41 GCCAAGACCTGGGTCCGGAGCTCTGATTTCCAGCTGCAGCA GCCAAGACCTGGGTCCGGAGCTCGGATTTCCAGCTGCAGCA < 41bp 0.378478678291155 0.762867198873117 0.24840912 0.30570695 prediction 0.525734397746235 Functional Gain - ALOX12P2 ENSG00000262943 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:6799968 chr17:6799971 . . 0 24 hm5C_associated_SNPs_106050 0 0 0 0 1 ALOX12P2 chr17:6799873 3'AG 6799873 Downstream 99bp
chr17 26821460 26821460 1 + T G SKCM 26821457 + 26821437 26821477 41 TGGCCTCCTCGACTGGAAGACGGTGAACCAGAAGATGCCGT TGGCCTCCTCGACTGGAAGACGGGGAACCAGAAGATGCCGT < 41bp 0.35870274362896 0.762854960334886 0.35851327 0.42243046 prediction 0.525709920669773 Functional Gain - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26821457 chr17:26821460 nonsynonymous SNV 0.628 3 24 hm5C_associated_SNPs_106055 0 0 0 0 2 SLC13A2 chr17:26821409 3'AG 26821409 Downstream 52bp
chr17 26821460 26821460 1 + T G SKCM 26821457 + 26821437 26821477 41 TGGCCTCCTCGACTGGAAGACGGTGAACCAGAAGATGCCGT TGGCCTCCTCGACTGGAAGACGGGGAACCAGAAGATGCCGT < 41bp 0.35870274362896 0.762854960334886 0.35851327 0.42243046 prediction 0.525709920669773 Functional Gain - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26821457 chr17:26821460 nonsynonymous SNV 0.628 3 24 hm5C_associated_SNPs_106055 0 0 0 0 2 SLC13A2 chr17:26821530 5'GT 26821530 Upstream 71bp
chr3 151148153 151148153 1 + C G HNSC 151148152 + 151148132 151148172 41 GCCGCCTTGGTGCGGCAGCTCCAGAAGCAGCTTTCCAGTAA GCCGCCTTGGTGCGGCAGCTCGAGAAGCAGCTTTCCAGTAA < 41bp 0.546357818815936 0.809208539988822 0.8087047 0.8852817 prediction 0.525701442345773 Functional Gain - MED12L ENSG00000144893 CDS Human protein_coding chr3:151148152 chr3:151148153 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_106056 0 0 0 0 2 MED12L chr3:151148087 3'AG 151148087 Downstream 67bp
chr3 151148153 151148153 1 + C G HNSC 151148152 + 151148132 151148172 41 GCCGCCTTGGTGCGGCAGCTCCAGAAGCAGCTTTCCAGTAA GCCGCCTTGGTGCGGCAGCTCGAGAAGCAGCTTTCCAGTAA < 41bp 0.546357818815936 0.809208539988822 0.8087047 0.8852817 prediction 0.525701442345773 Functional Gain - MED12L ENSG00000144893 CDS Human protein_coding chr3:151148152 chr3:151148153 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_106056 0 0 0 0 2 MED12L chr3:151148168 5'GT 151148168 Upstream 16bp
chr11 132204999 132204999 1 + C A COAD 132204995 + 132204975 132205015 41 TCGAGGAGGGCAGGCTGCGTCTGGCTGCTGCCTCTTCTGGT TCGAGGAGGGCAGGCTGCGTCTGGATGCTGCCTCTTCTGGT < 41bp 0.574486737027448 0.837330660917934 0.18666497 0.25651807 prediction 0.525687847780971 Functional Gain - NTM ENSG00000182667 CDS Human protein_coding chr11:132204995 chr11:132204999 nonsynonymous SNV 0.941 3 25 hm5C_associated_SNPs_106058 0 0 0 0 1 NTM chr11:132204940 3'AG 132204940 Downstream 60bp
chr4 152021718 152021718 1 + C A PAAD 152021714 + 152021694 152021734 41 TATAAGAAATATTGGAAAGACGCTCGTCACCAGGACCCAAG TATAAGAAATATTGGAAAGACGCTAGTCACCAGGACCCAAG < 41bp 0.349139388227713 0.762840672312467 0.15430033 0.3303938 prediction 0.525681344624933 Functional Gain - RPS3A ENSG00000145425 CDS Human protein_coding chr4:152021714 chr4:152021718 synonymous SNV . 0 25 hm5C_associated_SNPs_106059 0 0 1 0 1 RPS3A chr4:152021740 5'GT 152021740 Upstream 23bp
chr1 8021764 8021764 1 + C G rs566749983 8021760 + 8021740 8021780 41 GAGGCCGGACGGCGCGCGTGCGTGCTGGCGTGCGTTCATTT GAGGCCGGACGGCGCGCGTGCGTGGTGGCGTGCGTTCATTT < 41bp 0.532129507022668 0.794969238725487 0.42018306 0.8409363 prediction 0.525679463405637 Functional Gain - PARK7 ENSG00000116288 UTR5 Human protein_coding chr1:8021760 chr1:8021764 . . 0 25 hm5C_associated_SNPs_106060 0 0 1 0 2 PARK7 chr1:8021795 5'GT 8021795 Upstream 32bp
chr1 8021764 8021764 1 + C G rs566749983 8021760 + 8021740 8021780 41 GAGGCCGGACGGCGCGCGTGCGTGCTGGCGTGCGTTCATTT GAGGCCGGACGGCGCGCGTGCGTGGTGGCGTGCGTTCATTT < 41bp 0.532129507022668 0.794969238725487 0.42018306 0.8409363 prediction 0.525679463405637 Functional Gain - PARK7 ENSG00000116288 UTR5 Human protein_coding chr1:8021760 chr1:8021764 . . 0 25 hm5C_associated_SNPs_106060 0 0 1 0 2 PARK7 chr1:8021853 5'GT 8021853 Upstream 90bp
chr2 233245591 233245591 1 + C G rs377376739 233245590 + 233245570 233245610 41 CATCATGAAAGCAGGGCTTACCGGGCACTGACTGAGACGAT CATCATGAAAGCAGGGCTTACGGGGCACTGACTGAGACGAT < 41bp 0.590223726589231 0.85305729875927 0.8724469 0.8828715 prediction 0.525667144340078 Functional Gain - ALPP ENSG00000163283 CDS Human protein_coding chr2:233245590 chr2:233245591 nonsynonymous SNV 0.146 2 22 hm5C_associated_SNPs_106061 0 0 0 0 1 ALPP chr2:233245550 3'AG 233245550 Downstream 42bp
chr16 67200492 67200492 1 + C A LUSC 67200488 + 67200468 67200508 41 AGTGTCTCTTTGGGCCACTTCAGGCGGGGCCGAGCAATGCA AGTGTCTCTTTGGGCCACTTCAGGAGGGGCCGAGCAATGCA < 41bp 0.657713889563103 0.920507534470365 0.8941738 0.90106356 prediction 0.525587289814523 Functional Gain - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67200488 chr16:67200492 nonsynonymous SNV 0.720 0 25 hm5C_associated_SNPs_106068 0 0 1 0 2 HSF4 chr16:67200461 3'AG 67200461 Downstream 32bp
chr16 67200492 67200492 1 + C A LUSC 67200488 + 67200468 67200508 41 AGTGTCTCTTTGGGCCACTTCAGGCGGGGCCGAGCAATGCA AGTGTCTCTTTGGGCCACTTCAGGAGGGGCCGAGCAATGCA < 41bp 0.657713889563103 0.920507534470365 0.8941738 0.90106356 prediction 0.525587289814523 Functional Gain - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67200488 chr16:67200492 nonsynonymous SNV 0.720 0 25 hm5C_associated_SNPs_106068 0 0 1 0 2 HSF4 chr16:67200525 5'GT 67200525 Upstream 34bp
chr2 27248569 27248569 1 + T C rs200184079 27248567 + 27248547 27248587 41 CATCAGCCCGAAATGGCGGCCATGAGACTGATGCCCAAATT CATCAGCCCGAAATGGCGGCCACGAGACTGATGCCCAAATT < 41bp 0.5339398600642 0.796708229895419 0.21590447 0.30827492 prediction 0.525536739662438 Functional Gain - MAPRE3 ENSG00000084764 CDS Human protein_coding chr2:27248567 chr2:27248569 synonymous SNV . 0 23 hm5C_associated_SNPs_106074 0 0 1 0 1 MAPRE3 chr2:27248605 5'GT 27248605 Upstream 37bp
chr5 176873879 176873879 1 + C A rs111752154 176873875 + 176873855 176873895 41 CCCCCGGGCCGCCGCCGCCTCCCCCCGCAGGCCCGGGGCTC CCCCCGGGCCGCCGCCGCCTCCCCACGCAGGCCCGGGGCTC < 41bp 0.414482058439203 0.762765165509355 0.069556594 0.06344709 prediction 0.525530331018709 Functional Gain - PRR7-AS1 ENSG00000246334 ncRNA_intronic Human antisense chr5:176873875 chr5:176873879 . . 0 25 hm5C_associated_SNPs_106075 0 0 1 0 1 PRR7-AS1 chr5:176873961 5'GT 176873961 Upstream 83bp
chr1 118501624 118501624 1 + C G LUSC 118501623 + 118501603 118501643 41 ATTTCAAAAGTCAGCCAAGTCCGGGTAAGTGTCTTTGTATA ATTTCAAAAGTCAGCCAAGTCGGGGTAAGTGTCTTTGTATA < 41bp 0.486704094255775 0.762763896606823 0.62019736 0.9226481 prediction 0.525527793213647 Functional Gain - WDR3 ENSG00000065183 CDS Human protein_coding chr1:118501623 chr1:118501624 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_106076 0 0 1 0 2 WDR3 chr1:118501533 3'AG 118501533 Downstream 92bp
chr1 118501624 118501624 1 + C G LUSC 118501623 + 118501603 118501643 41 ATTTCAAAAGTCAGCCAAGTCCGGGTAAGTGTCTTTGTATA ATTTCAAAAGTCAGCCAAGTCGGGGTAAGTGTCTTTGTATA < 41bp 0.486704094255775 0.762763896606823 0.62019736 0.9226481 prediction 0.525527793213647 Functional Gain - WDR3 ENSG00000065183 CDS Human protein_coding chr1:118501623 chr1:118501624 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_106076 0 0 1 0 2 WDR3 chr1:118501626 5'GT 118501626 Upstream 3bp
chr1 156811947 156811947 1 - G T LUAD 156811951 - 156811931 156811971 41 GTTTGTGCACCGAGATCTAGCAGCCCGCAACTGCATGGTGT GTTTGTGCACCGAGATCTAGCAGCACGCAACTGCATGGTGT < 41bp 0.354040300271853 0.762761771459543 0.49352238 0.2676261 prediction 0.525523542919085 Functional Gain - INSRR;NTRK1 ENSG00000027644;ENSG00000198400 CDS Human other chr1:156811951 chr1:156811947 synonymous SNV . 0 25 hm5C_associated_SNPs_106077 0 0 0 0 1 INSRR;NTRK1 chr1:156811904 5'GT 156811904 Upstream 44bp
chr1 6631264 6631264 1 + C G rs140548974 6631263 + 6631243 6631283 41 GCCGCCCTGCTGAGCCCTTTCCTGGTGCCCATGGTAAGCTG GCCGCCCTGCTGAGCCCTTTCGTGGTGCCCATGGTAAGCTG < 41bp 0.59069519741488 0.853422289868353 0.35280162 0.90228677 prediction 0.525454184906946 Functional Gain - TAS1R1 ENSG00000173662 CDS Human protein_coding chr1:6631263 chr1:6631264 nonsynonymous SNV 0.982 4 22 hm5C_associated_SNPs_106080 0 0 0 0 1 TAS1R1 chr1:6631275 5'GT 6631275 Upstream 12bp
chr19 55019214 55019214 1 + T A LUAD 55019210 + 55019190 55019230 41 CGGTTGGGGTTCAAACATTCCGCCTGGAGAGGGAGGATAGA CGGTTGGGGTTCAAACATTCCGCCAGGAGAGGGAGGATAGA < 41bp 0.444941620306585 0.762715689060155 0.17020088 0.36993086 prediction 0.52543137812031 Functional Gain - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019210 chr19:55019214 nonsynonymous SNV 0.069 3 25 hm5C_associated_SNPs_106083 0 0 0 0 1 LAIR2 chr19:55019305 5'GT 55019305 Upstream 92bp
chr6 39824173 39824173 1 + C A UCEC 39824169 + 39824149 39824189 41 AAATCAACCTCCGGGACAACCACCCTCTGCAGTTCATGGAG AAATCAACCTCCGGGACAACCACCATCTGCAGTTCATGGAG < 41bp 0.326465440492919 0.762712670387687 0.034069747 0.046375483 prediction 0.525425340775374 Functional Gain - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39824169 chr6:39824173 nonsynonymous SNV 0.994 3 25 hm5C_associated_SNPs_106084 0 0 0 0 1 DAAM2 chr6:39824246 5'GT 39824246 Upstream 74bp
chr3 54930788 54930788 1 - A T STAD 54930792 - 54930772 54930812 41 AAAAATGTTCTCCTTGTCGCCAGCTTTCAGGAAGTCCCTTG AAAAATGTTCTCCTTGTCGCCAGCATTCAGGAAGTCCCTTG < 41bp 0.454867173687127 0.762703939193278 0.33262628 0.105567336 prediction 0.525407878386555 Functional Gain - CACNA2D3 ENSG00000157445 CDS Human antisense chr3:54930792 chr3:54930788 nonsynonymous SNV 0.668 0 25 hm5C_associated_SNPs_106085 0 0 0 0 1 CACNA2D3-AS1 chr3:54930693 5'GT 54930693 Upstream 96bp
chr1 41285618 41285618 1 + C G BLCA 41285614 + 41285594 41285634 41 GCTGGGCAGGGTCCTGGCTGCTGGCTTCGCCTTACTGGGCA GCTGGGCAGGGTCCTGGCTGCTGGGTTCGCCTTACTGGGCA < 41bp 0.549705403474602 0.812408047244324 0.2966193 0.7636311 prediction 0.525405287539443 Functional Gain - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41285614 chr1:41285618 synonymous SNV . 0 25 hm5C_associated_SNPs_106086 0 0 0 0 2 KCNQ4 chr1:41285547 3'AG 41285547 Downstream 72bp
chr1 41285618 41285618 1 + C G BLCA 41285614 + 41285594 41285634 41 GCTGGGCAGGGTCCTGGCTGCTGGCTTCGCCTTACTGGGCA GCTGGGCAGGGTCCTGGCTGCTGGGTTCGCCTTACTGGGCA < 41bp 0.549705403474602 0.812408047244324 0.2966193 0.7636311 prediction 0.525405287539443 Functional Gain - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41285614 chr1:41285618 synonymous SNV . 0 25 hm5C_associated_SNPs_106086 0 0 0 0 2 KCNQ4 chr1:41285657 5'GT 41285657 Upstream 40bp
chr16 332518 332518 1 + C A LUAD 332514 + 332494 332534 41 AAGTGTCTGCACCACACCTACCGCCGGGGCCTGCGCGGTGA AAGTGTCTGCACCACACCTACCGCAGGGGCCTGCGCGGTGA < 41bp 0.388313594977837 0.762683328945629 0.31721818 0.24064404 prediction 0.525366657891258 Functional Gain - ARHGDIG ENSG00000242173 CDS Human protein_coding chr16:332514 chr16:332518 synonymous SNV . 0 25 hm5C_associated_SNPs_106089 0 0 0 0 2 ARHGDIG chr16:332467 3'AG 332467 Downstream 52bp
chr16 332518 332518 1 + C A LUAD 332514 + 332494 332534 41 AAGTGTCTGCACCACACCTACCGCCGGGGCCTGCGCGGTGA AAGTGTCTGCACCACACCTACCGCAGGGGCCTGCGCGGTGA < 41bp 0.388313594977837 0.762683328945629 0.31721818 0.24064404 prediction 0.525366657891258 Functional Gain - ARHGDIG ENSG00000242173 CDS Human protein_coding chr16:332514 chr16:332518 synonymous SNV . 0 25 hm5C_associated_SNPs_106089 0 0 0 0 2 ARHGDIG chr16:332530 5'GT 332530 Upstream 13bp
chr2 99995517 99995517 1 + C G rs11896520 99995516 + 99995496 99995536 41 ACATAGTAAAAATGTAAACACCGAAAAGCTAAGAGCCCCTA ACATAGTAAAAATGTAAACACGGAAAAGCTAAGAGCCCCTA < 41bp 0.467725068418925 0.76267795368346 0.056791186 0.32212582 prediction 0.52535590736692 Functional Gain - EIF5B ENSG00000158417 CDS Human protein_coding chr2:99995516 chr2:99995517 synonymous SNV . 0 22 hm5C_associated_SNPs_106091 0 0 1 0 2 EIF5B chr2:99995482 3'AG 99995482 Downstream 36bp
chr2 99995517 99995517 1 + C G rs11896520 99995516 + 99995496 99995536 41 ACATAGTAAAAATGTAAACACCGAAAAGCTAAGAGCCCCTA ACATAGTAAAAATGTAAACACGGAAAAGCTAAGAGCCCCTA < 41bp 0.467725068418925 0.76267795368346 0.056791186 0.32212582 prediction 0.52535590736692 Functional Gain - EIF5B ENSG00000158417 CDS Human protein_coding chr2:99995516 chr2:99995517 synonymous SNV . 0 22 hm5C_associated_SNPs_106091 0 0 1 0 2 EIF5B chr2:99995589 5'GT 99995589 Upstream 73bp
chr16 2086471 2086471 1 + C A CESC 2086467 + 2086447 2086487 41 GGACCCGGGCTCACCTGCCGCCCGCTCTGGCCTCCGCGCCC GGACCCGGGCTCACCTGCCGCCCGATCTGGCCTCCGCGCCC < 41bp 0.353110769281682 0.762674893861125 0.046626627 0.08661568 prediction 0.52534978772225 Functional Gain - SLC9A3R2 ENSG00000065054 CDS Human protein_coding chr16:2086467 chr16:2086471 synonymous SNV . 0 25 hm5C_associated_SNPs_106093 0 0 0 0 1 SLC9A3R2 chr16:2086504 5'GT 2086504 Upstream 34bp
chr14 105715530 105715530 1 + C G rs61743879 105715526 + 105715506 105715546 41 GTTCAACAACGAGCTCATGGCCGACGTGCACTTCGTCGTGG GTTCAACAACGAGCTCATGGCCGAGGTGCACTTCGTCGTGG < 41bp 0.533690481255445 0.796345091589061 0.1801914 0.38978633 prediction 0.525309220667233 Functional Gain - BTBD6 ENSG00000184887 CDS Human protein_coding chr14:105715526 chr14:105715530 nonsynonymous SNV 0.683 4 25 hm5C_associated_SNPs_106095 0 0 1 0 2 BTBD6 chr14:105715494 3'AG 105715494 Downstream 37bp
chr14 105715530 105715530 1 + C G rs61743879 105715526 + 105715506 105715546 41 GTTCAACAACGAGCTCATGGCCGACGTGCACTTCGTCGTGG GTTCAACAACGAGCTCATGGCCGAGGTGCACTTCGTCGTGG < 41bp 0.533690481255445 0.796345091589061 0.1801914 0.38978633 prediction 0.525309220667233 Functional Gain - BTBD6 ENSG00000184887 CDS Human protein_coding chr14:105715526 chr14:105715530 nonsynonymous SNV 0.683 4 25 hm5C_associated_SNPs_106095 0 0 1 0 2 BTBD6 chr14:105715584 5'GT 105715584 Upstream 55bp
chr16 56866247 56866247 1 + C T SKCM 56866246 + 56866226 56866266 41 ACGACGATGGCACCAGCTCCCCACAAGACAGGCTCACTCTC ACGACGATGGCACCAGCTCCCTACAAGACAGGCTCACTCTC < 41bp 0.519223843247123 0.781867480416249 0.026884288 0.62297356 prediction 0.525287274338252 Functional Gain - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56866246 chr16:56866247 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_106096 0 0 1 0 2 NUP93 chr16:56866207 3'AG 56866207 Downstream 41bp
chr16 56866247 56866247 1 + C T SKCM 56866246 + 56866226 56866266 41 ACGACGATGGCACCAGCTCCCCACAAGACAGGCTCACTCTC ACGACGATGGCACCAGCTCCCTACAAGACAGGCTCACTCTC < 41bp 0.519223843247123 0.781867480416249 0.026884288 0.62297356 prediction 0.525287274338252 Functional Gain - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56866246 chr16:56866247 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_106096 0 0 1 0 2 NUP93 chr16:56866300 5'GT 56866300 Upstream 54bp
chr19 49513273 49513273 1 + C A rs1062708 49513269 + 49513249 49513289 41 AAGGCGACGGGCAAGATCTCCAAGCTGGGCCGCTCCTTCAC AAGGCGACGGGCAAGATCTCCAAGATGGGCCGCTCCTTCAC < 41bp 0.656222922646348 0.918861168289403 0.1789135 0.15174574 prediction 0.525276491286111 Functional Gain - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49513269 chr19:49513273 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_106098 0 0 1 0 2 RUVBL2 chr19:49513230 3'AG 49513230 Downstream 44bp
chr19 49513273 49513273 1 + C A rs1062708 49513269 + 49513249 49513289 41 AAGGCGACGGGCAAGATCTCCAAGCTGGGCCGCTCCTTCAC AAGGCGACGGGCAAGATCTCCAAGATGGGCCGCTCCTTCAC < 41bp 0.656222922646348 0.918861168289403 0.1789135 0.15174574 prediction 0.525276491286111 Functional Gain - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49513269 chr19:49513273 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_106098 0 0 1 0 2 RUVBL2 chr19:49513323 5'GT 49513323 Upstream 51bp
chr13 53603113 53603113 1 + T A LUAD 53603109 + 53603089 53603129 41 GTTGACTCCAGCTCCAGCTTCAGCTCCAGCTCCAGGTCGGG GTTGACTCCAGCTCCAGCTTCAGCACCAGCTCCAGGTCGGG < 41bp 0.577703866155745 0.840341701803771 0.010827363 0.025858998 prediction 0.525275671296053 Functional Gain - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53603109 chr13:53603113 nonsynonymous SNV 0.003 1 25 hm5C_associated_SNPs_106099 0 0 0 0 1 OLFM4 chr13:53603175 5'GT 53603175 Upstream 63bp
chr6 26459791 26459791 1 + C G rs72500817 26459787 + 26459767 26459807 41 TACGTTACGCTGCCATCTGTCACCCGAGAAAAATGCTGAGG TACGTTACGCTGCCATCTGTCACCGGAGAAAAATGCTGAGG < 41bp 0.549981840269496 0.812619593443865 0.32520455 0.4766259 prediction 0.525275506348738 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26459787 chr6:26459791 synonymous SNV . 0 25 hm5C_associated_SNPs_106100 0 0 1 0 1 BTN2A1 chr6:26459709 3'AG 26459709 Downstream 83bp
chr19 51831104 51831104 1 + C A COAD 51831100 + 51831080 51831120 41 AACTATACGTGTCGCGCCGCCAACCGACTGGGAGCGTCCAG AACTATACGTGTCGCGCCGCCAACAGACTGGGAGCGTCCAG < 41bp 0.356973388372171 0.762631691890206 0.72798145 0.5671211 prediction 0.525263383780411 Functional Gain - IGLON5 ENSG00000142549 CDS Human protein_coding chr19:51831100 chr19:51831104 synonymous SNV . 0 25 hm5C_associated_SNPs_106101 0 0 0 0 1 IGLON5 chr19:51831140 5'GT 51831140 Upstream 37bp
chr1 155699156 155699156 1 + C G HNSC 155699155 + 155699135 155699175 41 TGAAAAGAGAAGATAAAAGCCCGGTAGGAAAACTGGGTGTC TGAAAAGAGAAGATAAAAGCCGGGTAGGAAAACTGGGTGTC < 41bp 0.466553140681575 0.76262929105148 0.7701374 0.8897935 prediction 0.52525858210296 Functional Gain - DAP3 ENSG00000132676 CDS Human protein_coding chr1:155699155 chr1:155699156 nonsynonymous SNV 0.895 0 22 hm5C_associated_SNPs_106102 0 0 1 0 1 DAP3 chr1:155699157 5'GT 155699157 Upstream 2bp
chr10 1046704 1046704 1 + C G rs199736710 1046703 + 1046683 1046723 41 ATCACTGCCCTGGCCCACCTCCGTGCTGCGGTCCTGTATGT ATCACTGCCCTGGCCCACCTCGGTGCTGCGGTCCTGTATGT < 41bp 0.449215216529351 0.7626263504093 0.6312766 0.61795264 prediction 0.5252527008186 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1046703 chr10:1046704 nonsynonymous SNV 0.365 4 22 hm5C_associated_SNPs_106103 0 0 1 0 1 GTPBP4 chr10:1046617 3'AG 1046617 Downstream 88bp
chr22 26706763 26706763 1 + C A OV 26706759 + 26706739 26706779 41 ATCCGCATCGAGTTCACGTCCGACCAGGCCCGGGCGGCCTC ATCCGCATCGAGTTCACGTCCGACAAGGCCCGGGCGGCCTC < 41bp 0.340687053829912 0.762602885053553 0.08542752 0.113054216 prediction 0.525205770107106 Functional Gain - SEZ6L ENSG00000100095 CDS Human protein_coding chr22:26706759 chr22:26706763 nonsynonymous SNV 0.029 0 25 hm5C_associated_SNPs_106110 0 0 0 0 1 SEZ6L chr22:26706802 5'GT 26706802 Upstream 40bp
chr2 10863028 10863028 1 + C A OV 10863024 + 10863004 10863044 41 CTGGCGATAAGGAAAATTTGCAAGCTCTGGAGAGGATGAAT CTGGCGATAAGGAAAATTTGCAAGATCTGGAGAGGATGAAT < 41bp 0.359464363691541 0.762600767562162 0.1895771 0.23343769 prediction 0.525201535124323 Functional Gain - ATP6V1C2 ENSG00000143882 CDS Human protein_coding chr2:10863024 chr2:10863028 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_106112 0 0 1 0 2 ATP6V1C2 chr2:10862950 3'AG 10862950 Downstream 79bp
chr2 10863028 10863028 1 + C A OV 10863024 + 10863004 10863044 41 CTGGCGATAAGGAAAATTTGCAAGCTCTGGAGAGGATGAAT CTGGCGATAAGGAAAATTTGCAAGATCTGGAGAGGATGAAT < 41bp 0.359464363691541 0.762600767562162 0.1895771 0.23343769 prediction 0.525201535124323 Functional Gain - ATP6V1C2 ENSG00000143882 CDS Human protein_coding chr2:10863024 chr2:10863028 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_106112 0 0 1 0 2 ATP6V1C2 chr2:10863104 5'GT 10863104 Upstream 77bp
chr20 34054828 34054828 1 + T A LUSC 34054824 + 34054804 34054844 41 ACCTGAAAGGGGAGCACGGTCGCCTTCTCAGTCTATGGCGG ACCTGAAAGGGGAGCACGGTCGCCATCTCAGTCTATGGCGG < 41bp 0.428180670301335 0.762588989015213 0.25639886 0.7041935 prediction 0.525177978030426 Functional Gain - CEP250 ENSG00000126001 CDS Human protein_coding chr20:34054824 chr20:34054828 nonsynonymous SNV 0.957 3 25 hm5C_associated_SNPs_106115 0 0 1 0 1 CEP250 chr20:34054897 5'GT 34054897 Upstream 70bp
chr7 21470382 21470382 1 + T C UCEC 21470380 + 21470360 21470400 41 AGCTTGCATCAGTGCCTAACCTTCAGACAGTGAGCGTTGCC AGCTTGCATCAGTGCCTAACCTCCAGACAGTGAGCGTTGCC < 41bp 0.552626913488406 0.815214404315289 0.16058505 0.94156706 prediction 0.525174981653767 Functional Gain - SP4 ENSG00000105866 CDS Human protein_coding chr7:21470380 chr7:21470382 synonymous SNV . 0 23 hm5C_associated_SNPs_106116 0 0 1 0 1 SP4 chr7:21470461 5'GT 21470461 Upstream 80bp
chr8 87439926 87439926 1 + C G rs60177164 87439925 + 87439905 87439945 41 TTATTATGTGGATCATAACACCAGAACAACAACGTGGCAGC TTATTATGTGGATCATAACACGAGAACAACAACGTGGCAGC < 41bp 0.560856301679118 0.823443539762218 0.2506652 0.51294154 prediction 0.5251744761662 Functional Gain - WWP1 ENSG00000123124 CDS Human protein_coding chr8:87439925 chr8:87439926 synonymous SNV . 0 22 hm5C_associated_SNPs_106117 0 0 1 0 1 WWP1 chr8:87439872 3'AG 87439872 Downstream 55bp
chr14 102904477 102904477 1 + C G rs147312456 102904476 + 102904456 102904496 41 GCCTGTTCTGCAGCGCGTTGCCGGGCGCCGGGCTGCGCTGG GCCTGTTCTGCAGCGCGTTGCGGGGCGCCGGGCTGCGCTGG < 41bp 0.444888042576826 0.762580867301796 0.9073143 0.9411828 prediction 0.525161734603591 Functional Gain - TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102904476 chr14:102904477 nonsynonymous SNV 0.028 1 22 hm5C_associated_SNPs_106119 0 0 1 0 1 TECPR2 chr14:102904542 5'GT 102904542 Upstream 66bp
chr18 77798511 77798511 1 + C G BLCA 77798510 + 77798490 77798530 41 GGGGCGGGGTCTCAGGTTTCCCTGACTCCAGACTTCTCAGC GGGGCGGGGTCTCAGGTTTCCGTGACTCCAGACTTCTCAGC < 41bp 0.451847764853764 0.762580447866712 0.11774826 0.3107198 prediction 0.525160895733424 Functional Gain - RBFA ENSG00000101546 CDS Human protein_coding chr18:77798510 chr18:77798511 nonsynonymous SNV 0.933 0 22 hm5C_associated_SNPs_106120 0 0 1 0 1 RBFA chr18:77798505 3'AG 77798505 Downstream 7bp
chr3 128758633 128758633 1 + C A LUAD 128758629 + 128758609 128758649 41 CCTGCCAGCTGTTGCGGAGACAGCCCTCGGCACCAGCCTCT CCTGCCAGCTGTTGCGGAGACAGCACTCGGCACCAGCCTCT < 41bp 0.64600225349494 0.908575167995286 0.05112967 0.29589045 prediction 0.525145829000692 Functional Gain - EFCC1 ENSG00000114654 CDS Human protein_coding chr3:128758629 chr3:128758633 nonsynonymous SNV 0.034 1 25 hm5C_associated_SNPs_106121 0 0 0 0 1 EFCC1 chr3:128758555 3'AG 128758555 Downstream 79bp
chr1 156618614 156618614 1 + C T SKCM 156618613 + 156618593 156618633 41 TTCCCCAACCAGACTGGCTTCCCCAATAAGCACAGCCGCTT TTCCCCAACCAGACTGGCTTCTCCAATAAGCACAGCCGCTT < 41bp 0.491492792665998 0.762566796786794 0.4373751 0.95640516 prediction 0.525133593573587 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156618613 chr1:156618614 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_106123 0 0 0 0 1 BCAN chr1:156618653 5'GT 156618653 Upstream 40bp
chr11 64360346 64360346 1 + C A KIRC 64360342 + 64360322 64360362 41 GGGAGCTGCTGCGTGCGGCCCTGCCTCAGACAGGTGAGTAC GGGAGCTGCTGCGTGCGGCCCTGCATCAGACAGGTGAGTAC < 41bp 0.343816627517811 0.762556692661772 0.24946994 0.35571608 prediction 0.525113385323544 Functional Gain - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64360342 chr11:64360346 synonymous SNV . 0 25 hm5C_associated_SNPs_106124 0 0 0 0 2 SLC22A12 chr11:64360251 3'AG 64360251 Downstream 96bp
chr11 64360346 64360346 1 + C A KIRC 64360342 + 64360322 64360362 41 GGGAGCTGCTGCGTGCGGCCCTGCCTCAGACAGGTGAGTAC GGGAGCTGCTGCGTGCGGCCCTGCATCAGACAGGTGAGTAC < 41bp 0.343816627517811 0.762556692661772 0.24946994 0.35571608 prediction 0.525113385323544 Functional Gain - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64360342 chr11:64360346 synonymous SNV . 0 25 hm5C_associated_SNPs_106124 0 0 0 0 2 SLC22A12 chr11:64360354 5'GT 64360354 Upstream 9bp
chr17 44952701 44952701 1 + C A PCPG 44952697 + 44952677 44952717 41 GAAACAAGGACCTGCGGGCACGGGCAGACGCCCACAATACC GAAACAAGGACCTGCGGGCACGGGAAGACGCCCACAATACC < 41bp 0.656638467184414 0.919189383429037 0.85460734 0.8907552 prediction 0.525101832489246 Functional Gain - WNT9B ENSG00000158955 CDS Human protein_coding chr17:44952697 chr17:44952701 nonsynonymous SNV 0.892 1 25 hm5C_associated_SNPs_106125 0 0 0 0 1 WNT9B chr17:44952732 5'GT 44952732 Upstream 32bp
chr1 2333744 2333744 1 + T C COAD 2333742 + 2333722 2333762 41 CCGATTCTGGTGATGTACTTCATCATGCTCTTCTGTATCAC CCGATTCTGGTGATGTACTTCACCATGCTCTTCTGTATCAC < 41bp 0.524468038726547 0.786987078403391 0.09347671 0.076699555 prediction 0.52503807935369 Functional Gain - RER1 ENSG00000157916 CDS Human protein_coding chr1:2333742 chr1:2333744 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106126 0 0 1 1 2 RER1 chr1:2333646 3'AG 2333646 Downstream 99bp
chr1 2333744 2333744 1 + T C COAD 2333742 + 2333722 2333762 41 CCGATTCTGGTGATGTACTTCATCATGCTCTTCTGTATCAC CCGATTCTGGTGATGTACTTCACCATGCTCTTCTGTATCAC < 41bp 0.524468038726547 0.786987078403391 0.09347671 0.076699555 prediction 0.52503807935369 Functional Gain - RER1 ENSG00000157916 CDS Human protein_coding chr1:2333742 chr1:2333744 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106126 0 0 1 1 2 RER1 chr1:2333781 5'GT 2333781 Upstream 38bp
chr11 65004309 65004309 1 + C G rs564476 65004308 + 65004288 65004328 41 GCTGGCCGTCTGCGTCCTGACCGAGACCCGCAACATGCCCC GCTGGCCGTCTGCGTCCTGACGGAGACCCGCAACATGCCCC < 41bp 0.458950399985281 0.76250394792073 0.39173862 0.8430362 prediction 0.525007895841461 Functional Gain - SLC22A20;POLA2 ENSG00000197847 ncRNA_exonic Human transcribed_unitary_pseudogene chr11:65004308 chr11:65004309 . . 0 22 hm5C_associated_SNPs_106128 0 0 0 0 1 SLC22A20;POLA2 chr11:65004359 5'GT 65004359 Upstream 51bp
chr9 109701298 109701298 1 + C T SARC 109701297 + 109701277 109701317 41 CACGGAAAAGCCCTGACCCTCCCCAGGCCACGGATCGTCAG CACGGAAAAGCCCTGACCCTCTCCAGGCCACGGATCGTCAG < 41bp 0.482453976759119 0.762502662863807 0.04694888 0.9432105 prediction 0.525005325727615 Functional Gain - ZNF462 ENSG00000148143 CDS Human protein_coding chr9:109701297 chr9:109701298 nonsynonymous SNV 0.991 2 22 hm5C_associated_SNPs_106130 0 0 0 0 1 ZNF462 chr9:109701388 5'GT 109701388 Upstream 91bp
chr16 81743439 81743439 1 + C A rs542882672 81743435 + 81743415 81743455 41 TCAAGGCAGGAAGACGTTTGCAACCGCGACAAAATAACTCT TCAAGGCAGGAAGACGTTTGCAACAGCGACAAAATAACTCT < 41bp 0.365416308030671 0.762498893006386 0.14025134 0.1668978 prediction 0.524997786012772 Functional Gain - CMIP ENSG00000153815 UTR3 Human protein_coding chr16:81743435 chr16:81743439 . . 0 25 hm5C_associated_SNPs_106131 0 0 1 0 1 CMIP chr16:81743351 3'AG 81743351 Downstream 89bp
chr2 177016726 177016726 1 + C A LUAD 177016722 + 177016702 177016742 41 GTCAGTCCGACCCCAAGCAGCCGCCCTCCGGGACGGCACTC GTCAGTCCGACCCCAAGCAGCCGCACTCCGGGACGGCACTC < 41bp 0.376078572858355 0.762494200620075 0.17667872 0.114533484 prediction 0.52498840124015 Functional Gain - HOXD4 ENSG00000170166 CDS Human protein_coding chr2:177016722 chr2:177016726 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_106132 0 0 0 0 1 HOXD4 chr2:177016794 5'GT 177016794 Upstream 69bp
chr5 156991 156991 1 + C A BLCA 156990 + 156970 157010 41 CTCCAGCAGCTGGAGCACCTCCGGGAGCTGGCGTCACTCCT CTCCAGCAGCTGGAGCACCTCAGGGAGCTGGCGTCACTCCT < 41bp 0.500917939133285 0.763408884737444 0.91103005 0.92673564 prediction 0.524981891208319 Functional Gain - PLEKHG4B ENSG00000153404 CDS Human protein_coding chr5:156990 chr5:156991 synonymous SNV . 0 22 hm5C_associated_SNPs_106134 0 0 0 0 1 PLEKHG4B chr5:157026 5'GT 157026 Upstream 36bp
chr3 151538217 151538217 1 + T C LUSC 151538215 + 151538195 151538235 41 CAAGATGGACAGCAGACAGACTTGATGCTGTCGTCGTATCA CAAGATGGACAGCAGACAGACTCGATGCTGTCGTCGTATCA < 41bp 0.480321792197609 0.762481675680712 0.20550537 0.41638762 prediction 0.524963351361424 Functional Gain - AADAC ENSG00000114771 CDS Human protein_coding chr3:151538215 chr3:151538217 synonymous SNV . 0 23 hm5C_associated_SNPs_106135 0 0 0 0 2 AADAC chr3:151538171 3'AG 151538171 Downstream 47bp
chr3 151538217 151538217 1 + T C LUSC 151538215 + 151538195 151538235 41 CAAGATGGACAGCAGACAGACTTGATGCTGTCGTCGTATCA CAAGATGGACAGCAGACAGACTCGATGCTGTCGTCGTATCA < 41bp 0.480321792197609 0.762481675680712 0.20550537 0.41638762 prediction 0.524963351361424 Functional Gain - AADAC ENSG00000114771 CDS Human protein_coding chr3:151538215 chr3:151538217 synonymous SNV . 0 23 hm5C_associated_SNPs_106135 0 0 0 0 2 AADAC chr3:151538240 5'GT 151538240 Upstream 24bp
chr1 210267718 210267718 1 + C A LUAD 210267714 + 210267694 210267734 41 CACCCCCGCTGGATGAATTGCAGCCACCACCATATCAGGAT CACCCCCGCTGGATGAATTGCAGCAACCACCATATCAGGAT < 41bp 0.351082318879295 0.762470896150153 0.16012672 0.068109214 prediction 0.524941792300306 Functional Gain - SYT14 ENSG00000143469 CDS Human protein_coding chr1:210267714 chr1:210267718 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_106136 0 0 0 0 1 SYT14 chr1:210267667 3'AG 210267667 Downstream 52bp
chr15 90320436 90320436 1 + C G HNSC 90320432 + 90320412 90320452 41 CCCAAGGCTGTCCCTGGACGCAGTCGTCCCCAGAGCCCCGG CCCAAGGCTGTCCCTGGACGCAGTGGTCCCCAGAGCCCCGG < 41bp 0.535190217422658 0.797652216952468 0.21509448 0.32557917 prediction 0.524923999059621 Functional Gain - MESP2 ENSG00000188095 CDS Human protein_coding chr15:90320432 chr15:90320436 nonsynonymous SNV 0.018 1 25 hm5C_associated_SNPs_106137 0 0 0 0 1 MESP2 chr15:90320512 5'GT 90320512 Upstream 77bp
chr7 142962124 142962124 1 + T C rs147245180 142962122 + 142962102 142962142 41 CGTTTCCTCACCGCCGTGAACTTGGAGCATCCAGAGATGCT CGTTTCCTCACCGCCGTGAACTCGGAGCATCCAGAGATGCT < 41bp 0.495499028723916 0.762452192833608 0.17606884 0.16162616 prediction 0.524904385667216 Functional Gain - GSTK1 ENSG00000197448 CDS Human protein_coding chr7:142962122 chr7:142962124 nonsynonymous SNV 0.607 0 23 hm5C_associated_SNPs_106140 0 0 1 0 1 GSTK1 chr7:142962085 3'AG 142962085 Downstream 40bp
chr7 129909536 129909536 1 + C G LUAD 129909535 + 129909515 129909555 41 TTTTGGAAATCACCCACCACCCCAGGGGAGACAGCCCACGT TTTTGGAAATCACCCACCACCGCAGGGGAGACAGCCCACGT < 41bp 0.590895817402784 0.853293357549678 0.099035025 0.30701047 prediction 0.524795080293788 Functional Gain - CPA2 ENSG00000158516 CDS Human protein_coding chr7:129909535 chr7:129909536 nonsynonymous SNV 0.441 1 22 hm5C_associated_SNPs_106146 0 0 0 0 1 CPA2 chr7:129909509 3'AG 129909509 Downstream 28bp
chr19 804074 804074 1 + C G SKCM 804073 + 804053 804093 41 AAGAAGTTCAAAGGTGACAGCCGAAGTGCAGGCGTCCCCTC AAGAAGTTCAAAGGTGACAGCGGAAGTGCAGGCGTCCCCTC < 41bp 0.590143122948199 0.852536509121799 0.33644328 0.660872 prediction 0.5247867723472 Functional Gain - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804073 chr19:804074 nonsynonymous SNV 0.418 2 22 hm5C_associated_SNPs_106149 0 0 1 0 1 PTBP1 chr19:804036 3'AG 804036 Downstream 39bp
chr18 61264278 61264278 1 + C G ESCA 61264277 + 61264257 61264297 41 GAAAGGTGAATCTGCACTTGCCCCGGTTTGAGGTGGAGGAC GAAAGGTGAATCTGCACTTGCGCCGGTTTGAGGTGGAGGAC < 41bp 0.581014581449939 0.843399596459581 0.06667969 0.22608277 prediction 0.524770030019283 Functional Gain - SERPINB13 ENSG00000197641 CDS Human protein_coding chr18:61264277 chr18:61264278 nonsynonymous SNV 0.297 5 22 hm5C_associated_SNPs_106151 0 0 0 0 1 SERPINB13 chr18:61264193 3'AG 61264193 Downstream 86bp
chr19 36351545 36351545 1 + C A rs73928337 36351541 + 36351521 36351561 41 AGCAACGCCGTGGGTAGCGCCAACCGCAGTACTGCGCTGGA AGCAACGCCGTGGGTAGCGCCAACAGCAGTACTGCGCTGGA < 41bp 0.342142240748785 0.762383887169568 0.27489245 0.4604112 prediction 0.524767774339135 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36351541 chr19:36351545 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_106152 0 0 0 0 1 KIRREL2 chr19:36351569 5'GT 36351569 Upstream 25bp
chr17 55079432 55079432 1 + C A STAD 55079428 + 55079408 55079448 41 TGGCCAGAACTGCCTAAATTCAGTCAGCTGAAGTGGAAGGC TGGCCAGAACTGCCTAAATTCAGTAAGCTGAAGTGGAAGGC < 41bp 0.349045947502731 0.762382618580971 0.26675075 0.3648625 prediction 0.524765237161942 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55079428 chr17:55079432 nonsynonymous SNV 0.989 1 25 hm5C_associated_SNPs_106154 0 0 1 0 1 SCPEP1 chr17:55079379 3'AG 55079379 Downstream 54bp
chr22 38046244 38046244 1 + C A UCEC 38046240 + 38046220 38046260 41 GCGCTGATCCAGAGCGCAGACACCCTCTTCCCTGGAGGTGA GCGCTGATCCAGAGCGCAGACACCATCTTCCCTGGAGGTGA < 41bp 0.330488801974725 0.762345487047054 0.14757472 0.22470537 prediction 0.524690974094108 Functional Gain - SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38046240 chr22:38046244 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_106158 0 0 1 0 2 SH3BP1 chr22:38046159 3'AG 38046159 Downstream 86bp
chr22 38046244 38046244 1 + C A UCEC 38046240 + 38046220 38046260 41 GCGCTGATCCAGAGCGCAGACACCCTCTTCCCTGGAGGTGA GCGCTGATCCAGAGCGCAGACACCATCTTCCCTGGAGGTGA < 41bp 0.330488801974725 0.762345487047054 0.14757472 0.22470537 prediction 0.524690974094108 Functional Gain - SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38046240 chr22:38046244 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_106158 0 0 1 0 2 SH3BP1 chr22:38046256 5'GT 38046256 Upstream 13bp
chr6 154412559 154412559 1 + T G SKCM 154412556 + 154412536 154412576 41 TCCACTCGAATTCGTCAGAACACTAGAGACCACCCCTCCAC TCCACTCGAATTCGTCAGAACACGAGAGACCACCCCTCCAC < 41bp 0.586472839994786 0.848815078390961 0.019038469 0.06577429 prediction 0.52468447679235 Functional Gain - OPRM1 ENSG00000112038 CDS Human protein_coding chr6:154412556 chr6:154412559 synonymous SNV . 0 24 hm5C_associated_SNPs_106159 0 0 0 0 1 OPRM1 chr6:154412607 5'GT 154412607 Upstream 49bp
chr8 71646066 71646066 1 + T C LGG 71646064 + 71646044 71646084 41 GGTCTCTTGCTGTGCTATTTCTTGGTCAACTGTTGATTATC GGTCTCTTGCTGTGCTATTTCTCGGTCAACTGTTGATTATC < 41bp 0.509171677132765 0.771513371017206 0.29692358 0.27657825 prediction 0.524683387768883 Functional Gain - XKR9 ENSG00000221947 CDS Human protein_coding chr8:71646064 chr8:71646066 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_106160 0 0 0 0 1 XKR9 chr8:71646031 3'AG 71646031 Downstream 36bp
chr9 102595026 102595026 1 + T G LUAD 102595023 + 102595003 102595043 41 CCTGGCAAATAAAAACTGCCCAGTAGACAAGAGACGTCGAA CCTGGCAAATAAAAACTGCCCAGGAGACAAGAGACGTCGAA < 41bp 0.379656490232106 0.762337740262381 0.13846272 0.42724 prediction 0.524675480524762 Functional Gain - NR4A3 ENSG00000119508 CDS Human protein_coding chr9:102595023 chr9:102595026 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_106161 0 0 1 0 2 NR4A3 chr9:102594971 3'AG 102594971 Downstream 56bp
chr9 102595026 102595026 1 + T G LUAD 102595023 + 102595003 102595043 41 CCTGGCAAATAAAAACTGCCCAGTAGACAAGAGACGTCGAA CCTGGCAAATAAAAACTGCCCAGGAGACAAGAGACGTCGAA < 41bp 0.379656490232106 0.762337740262381 0.13846272 0.42724 prediction 0.524675480524762 Functional Gain - NR4A3 ENSG00000119508 CDS Human protein_coding chr9:102595023 chr9:102595026 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_106161 0 0 1 0 2 NR4A3 chr9:102595100 5'GT 102595100 Upstream 75bp
chr11 64126704 64126704 1 + C A rs547326193 64126700 + 64126680 64126720 41 CCGCGCGGGCCCCAGCGACCCGCCCGCCATGGGGGACGAGG CCGCGCGGGCCCCAGCGACCCGCCAGCCATGGGGGACGAGG < 41bp 0.520645516728189 0.782982322108175 0.06864318 0.2261338 prediction 0.524673610759972 Functional Gain - RPS6KA4 ENSG00000162302 UTR5 Human protein_coding chr11:64126700 chr11:64126704 . . 0 25 hm5C_associated_SNPs_106162 0 0 1 0 1 RPS6KA4 chr11:64126762 5'GT 64126762 Upstream 59bp
chr1 2488119 2488119 1 - G T UCEC 2488123 - 2488103 2488143 41 ATCTCCAGGGAGGAGGCCCCCAGTCTCCAGGAGGCTCCATG ATCTCCAGGGAGGAGGCCCCCAGTATCCAGGAGGCTCCATG < 41bp 0.418947102013726 0.762326066710245 0.531283 0.5341241 prediction 0.52465213342049 Functional Gain - TNFRSF14 ENSG00000157873 CDS Human protein_coding chr1:2488123 chr1:2488119 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_106164 0 0 0 0 1 TNFRSF14 chr1:2488135 3'AG 2488135 Downstream 17bp
chr12 52307367 52307367 1 + C G LUAD 52307363 + 52307343 52307383 41 CCACCCAACCTCCTTCGGAGCAGCCGGGAACAGATGGCCAG CCACCCAACCTCCTTCGGAGCAGCGGGGAACAGATGGCCAG < 41bp 0.464767653697775 0.762302785004898 0.30702198 0.5765937 prediction 0.524605570009796 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52307363 chr12:52307367 nonsynonymous SNV 0.157 1 25 hm5C_associated_SNPs_106167 0 0 0 0 1 ACVRL1 chr12:52307343 3'AG 52307343 Downstream 25bp
chr1 197890772 197890772 1 + T G rs183473436 197890770 + 197890750 197890790 41 AGCCCAGCGCTGGGAGTGGACATCGTCAATTACAACTCAGG AGCCCAGCGCTGGGAGTGGACAGCGTCAATTACAACTCAGG < 41bp 0.407025896479436 0.762298627569636 0.0469099 0.32835105 prediction 0.524597255139273 Functional Gain - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197890770 chr1:197890772 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_106169 0 0 0 0 1 LHX9 chr1:197890789 5'GT 197890789 Upstream 18bp
chr17 73780975 73780975 1 + C G UCEC 73780974 + 73780954 73780994 41 ACAAGACCATGTCGAAGGGCCCCGGGCCCGGCGGCTCCGCA ACAAGACCATGTCGAAGGGCCGCGGGCCCGGCGGCTCCGCA < 41bp 0.57983726630898 0.842120565769399 0.30183074 0.56679565 prediction 0.524566598920837 Functional Gain - UNK ENSG00000132478 CDS Human protein_coding chr17:73780974 chr17:73780975 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_106172 0 0 1 0 1 UNK chr17:73781065 5'GT 73781065 Upstream 91bp
chrX 48399815 48399815 1 + C A LUAD 48399811 + 48399791 48399831 41 TGTTGCAGCACATCCTCATCCGAGCCTTTGATTTGAGTGGG TGTTGCAGCACATCCTCATCCGAGACTTTGATTTGAGTGGG < 41bp 0.536802941447568 0.799074732637027 0.29837465 0.43036777 prediction 0.524543582378918 Functional Gain - TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399811 chrX:48399815 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_106175 0 0 0 0 3 TBC1D25 chrX:48399721 3'AG 48399721 Downstream 95bp
chrX 48399815 48399815 1 + C A LUAD 48399811 + 48399791 48399831 41 TGTTGCAGCACATCCTCATCCGAGCCTTTGATTTGAGTGGG TGTTGCAGCACATCCTCATCCGAGACTTTGATTTGAGTGGG < 41bp 0.536802941447568 0.799074732637027 0.29837465 0.43036777 prediction 0.524543582378918 Functional Gain - TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399811 chrX:48399815 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_106175 0 0 0 0 3 TBC1D25 chrX:48399830 5'GT 48399830 Upstream 16bp
chrX 48399815 48399815 1 + C A LUAD 48399811 + 48399791 48399831 41 TGTTGCAGCACATCCTCATCCGAGCCTTTGATTTGAGTGGG TGTTGCAGCACATCCTCATCCGAGACTTTGATTTGAGTGGG < 41bp 0.536802941447568 0.799074732637027 0.29837465 0.43036777 prediction 0.524543582378918 Functional Gain - TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399811 chrX:48399815 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_106175 0 0 0 0 3 TBC1D25 chrX:48399901 5'GT 48399901 Upstream 87bp
chr6 35196434 35196434 1 + T C UCEC 35196432 + 35196412 35196452 41 AGGATAATGCAGGTTGTGTGCATGACTGTGTCAACATCCCT AGGATAATGCAGGTTGTGTGCACGACTGTGTCAACATCCCT < 41bp 0.493189066369381 0.762271192511667 0.13396612 0.114084244 prediction 0.524542385023334 Functional Gain - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35196432 chr6:35196434 synonymous SNV . 0 23 hm5C_associated_SNPs_106176 0 0 1 0 2 SCUBE3 chr6:35196391 3'AG 35196391 Downstream 44bp
chr6 35196434 35196434 1 + T C UCEC 35196432 + 35196412 35196452 41 AGGATAATGCAGGTTGTGTGCATGACTGTGTCAACATCCCT AGGATAATGCAGGTTGTGTGCACGACTGTGTCAACATCCCT < 41bp 0.493189066369381 0.762271192511667 0.13396612 0.114084244 prediction 0.524542385023334 Functional Gain - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35196432 chr6:35196434 synonymous SNV . 0 23 hm5C_associated_SNPs_106176 0 0 1 0 2 SCUBE3 chr6:35196516 5'GT 35196516 Upstream 83bp
chr19 17886898 17886898 1 + C A LUSC 17886894 + 17886874 17886914 41 GCCTGCCCCGGCCCGGGCTCCAGCCTGCAGCCCCGAGGCAG GCCTGCCCCGGCCCGGGCTCCAGCATGCAGCCCCGAGGCAG < 41bp 0.653139556013879 0.915394795903344 0.30141407 0.29743114 prediction 0.524510479778929 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17886894 chr19:17886898 synonymous SNV . 0 25 hm5C_associated_SNPs_106178 0 0 0 0 1 FCHO1 chr19:17886970 5'GT 17886970 Upstream 73bp
chr8 104384794 104384794 1 + T A LUAD 104384790 + 104384770 104384810 41 GGGTCTTCATATGTGGCCGCCAGGTAGGAGCATCACAGTCA GGGTCTTCATATGTGGCCGCCAGGAAGGAGCATCACAGTCA < 41bp 0.478118935712924 0.762251347246815 0.3458201 0.20716178 prediction 0.52450269449363 Functional Gain - CTHRC1 ENSG00000164932 CDS Human protein_coding chr8:104384790 chr8:104384794 synonymous SNV . 0 25 hm5C_associated_SNPs_106180 0 0 0 0 1 CTHRC1 chr8:104384887 5'GT 104384887 Upstream 94bp
chr19 44653030 44653030 1 + T C GBM 44653028 + 44653008 44653048 41 CAAGATGTGATGCTGGAGAACTTCAGGAACCTGCTGTCAGT CAAGATGTGATGCTGGAGAACTCCAGGAACCTGCTGTCAGT < 41bp 0.483540346900997 0.762216557372498 0.17327744 0.93580234 prediction 0.524433114744997 Functional Gain - ZNF234 ENSG00000263002 CDS Human protein_coding chr19:44653028 chr19:44653030 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_106184 0 0 1 0 1 ZNF234 chr19:44653050 5'GT 44653050 Upstream 21bp
chr7 128851576 128851576 1 + C T LUAD 128851575 + 128851555 128851595 41 CTCGGAGAGGAGCCATACTGCCCCAGGATATTTCTGTCACC CTCGGAGAGGAGCCATACTGCTCCAGGATATTTCTGTCACC < 41bp 0.516201445592057 0.778415326248523 0.11832327 0.5061993 prediction 0.524427761312932 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128851575 chr7:128851576 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_106185 0 0 1 0 2 SMO chr7:128851477 3'AG 128851477 Downstream 100bp
chr7 128851576 128851576 1 + C T LUAD 128851575 + 128851555 128851595 41 CTCGGAGAGGAGCCATACTGCCCCAGGATATTTCTGTCACC CTCGGAGAGGAGCCATACTGCTCCAGGATATTTCTGTCACC < 41bp 0.516201445592057 0.778415326248523 0.11832327 0.5061993 prediction 0.524427761312932 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128851575 chr7:128851576 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_106185 0 0 1 0 2 SMO chr7:128851611 5'GT 128851611 Upstream 36bp
chr21 47986544 47986544 1 + C T UCEC 47986543 + 47986523 47986563 41 CTCAGAGGCATGCGGTACCACCCCATCGACATTGAGACCTC CTCAGAGGCATGCGGTACCACTCCATCGACATTGAGACCTC < 41bp 0.518539830925545 0.780735764955615 0.017842352 0.95881164 prediction 0.524391868060139 Functional Gain - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47986543 chr21:47986544 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_106186 0 0 0 0 2 DIP2A chr21:47986473 3'AG 47986473 Downstream 72bp
chr21 47986544 47986544 1 + C T UCEC 47986543 + 47986523 47986563 41 CTCAGAGGCATGCGGTACCACCCCATCGACATTGAGACCTC CTCAGAGGCATGCGGTACCACTCCATCGACATTGAGACCTC < 41bp 0.518539830925545 0.780735764955615 0.017842352 0.95881164 prediction 0.524391868060139 Functional Gain - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47986543 chr21:47986544 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_106186 0 0 0 0 2 DIP2A chr21:47986596 5'GT 47986596 Upstream 53bp
chr7 158734715 158734715 1 + C A UCEC 158734711 + 158734691 158734731 41 ACGGACAGCCATGCGGTCACCGGCCTGCAGTGGTCCCCAAC ACGGACAGCCATGCGGTCACCGGCATGCAGTGGTCCCCAAC < 41bp 0.657116665621091 0.919308143507909 0.42253712 0.7236879 prediction 0.524382955773637 Functional Gain - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158734711 chr7:158734715 nonsynonymous SNV 0.565 3 25 hm5C_associated_SNPs_106187 0 0 0 0 1 WDR60 chr7:158734616 3'AG 158734616 Downstream 100bp
chr5 43616103 43616103 1 + C G HNSC 43616102 + 43616082 43616122 41 ACTACAGTTCTGGCAATGGACCAGGTTCCAAGAGTCACAAT ACTACAGTTCTGGCAATGGACGAGGTTCCAAGAGTCACAAT < 41bp 0.46119452348515 0.762185948191746 0.32680744 0.78242296 prediction 0.524371896383493 Functional Gain - NNT ENSG00000112992 CDS Human protein_coding chr5:43616102 chr5:43616103 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_106188 0 0 0 0 1 NNT chr5:43616167 5'GT 43616167 Upstream 65bp
chr10 98714729 98714729 1 + C G rs61752726 98714725 + 98714705 98714745 41 ATTAGGCGACCTGGGAGACCCAGCCAGTACCGCCCAGACGG ATTAGGCGACCTGGGAGACCCAGCGAGTACCGCCCAGACGG < 41bp 0.485849905774938 0.762179799047217 0.114184886 0.3887851 prediction 0.524359598094434 Functional Gain - LCOR ENSG00000196233 CDS Human protein_coding chr10:98714725 chr10:98714729 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_106191 0 0 0 0 1 LCOR chr10:98714710 3'AG 98714710 Downstream 20bp
chr17 73736913 73736913 1 + C G BRCA 73736909 + 73736889 73736929 41 AGGCAGATCTCCGGTGTACACAAGCTCCAGCAGACCAAGTT AGGCAGATCTCCGGTGTACACAAGGTCCAGCAGACCAAGTT < 41bp 0.551085902748053 0.813265179356 0.4074512 0.9011715 prediction 0.524358553215893 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73736909 chr17:73736913 nonsynonymous SNV 0.978 0 25 hm5C_associated_SNPs_106192 0 0 0 0 2 ITGB4 chr17:73736874 3'AG 73736874 Downstream 40bp
chr17 73736913 73736913 1 + C G BRCA 73736909 + 73736889 73736929 41 AGGCAGATCTCCGGTGTACACAAGCTCCAGCAGACCAAGTT AGGCAGATCTCCGGTGTACACAAGGTCCAGCAGACCAAGTT < 41bp 0.551085902748053 0.813265179356 0.4074512 0.9011715 prediction 0.524358553215893 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73736909 chr17:73736913 nonsynonymous SNV 0.978 0 25 hm5C_associated_SNPs_106192 0 0 0 0 2 ITGB4 chr17:73736932 5'GT 73736932 Upstream 20bp
chr4 100521877 100521877 1 + T G COAD 100521875 + 100521855 100521895 41 TCTCATCCCAATGAAGAACTCCTGAGAGCCCTCATTGTAAG TCTCATCCCAATGAAGAACTCCGGAGAGCCCTCATTGTAAG < 41bp 0.426380058047255 0.762174836955423 0.056795716 0.1346544 prediction 0.524349673910846 Functional Gain - MTTP ENSG00000138823 CDS Human protein_coding chr4:100521875 chr4:100521877 nonsynonymous SNV 0.958 4 23 hm5C_associated_SNPs_106194 0 0 1 0 1 MTTP chr4:100521890 5'GT 100521890 Upstream 14bp
chr12 57881962 57881962 1 + T A KIRC 57881958 + 57881938 57881978 41 CCCGGGGCAGAGCAGAGGTGCTCATCAGCACTGTAGGCCCG CCCGGGGCAGAGCAGAGGTGCTCAACAGCACTGTAGGCCCG < 41bp 0.432945456859914 0.76214426067922 0.5767517 0.778434 prediction 0.52428852135844 Functional Gain - MARS ENSG00000166986 CDS Human protein_coding chr12:57881958 chr12:57881962 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_106197 0 0 1 0 1 MARS chr12:57881982 5'GT 57881982 Upstream 21bp
chr1 201757670 201757670 1 + C A UCEC 201757666 + 201757646 201757686 41 CCCACCCACGAGGCGGCCTTCGAGCTGTACAGCGGCTCCCA CCCACCCACGAGGCGGCCTTCGAGATGTACAGCGGCTCCCA < 41bp 0.373689063806103 0.76213636113884 0.8938843 0.91772854 prediction 0.52427272227768 Functional Gain - NAV1 ENSG00000134369 CDS Human protein_coding chr1:201757666 chr1:201757670 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_106198 0 0 1 0 2 NAV1 chr1:201757596 3'AG 201757596 Downstream 75bp
chr1 201757670 201757670 1 + C A UCEC 201757666 + 201757646 201757686 41 CCCACCCACGAGGCGGCCTTCGAGCTGTACAGCGGCTCCCA CCCACCCACGAGGCGGCCTTCGAGATGTACAGCGGCTCCCA < 41bp 0.373689063806103 0.76213636113884 0.8938843 0.91772854 prediction 0.52427272227768 Functional Gain - NAV1 ENSG00000134369 CDS Human protein_coding chr1:201757666 chr1:201757670 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_106198 0 0 1 0 2 NAV1 chr1:201757766 5'GT 201757766 Upstream 97bp
chr3 179478937 179478937 1 + C G LUAD 179478936 + 179478916 179478956 41 GTCATCAGTGATGCAGCTGGCCGAGATGGGTTTCCCGCTGG GTCATCAGTGATGCAGCTGGCGGAGATGGGTTTCCCGCTGG < 41bp 0.451165638814 0.762121943357931 0.35079294 0.8837244 prediction 0.524243886715862 Functional Gain - USP13 ENSG00000058056 CDS Human protein_coding chr3:179478936 chr3:179478937 synonymous SNV . 0 22 hm5C_associated_SNPs_106200 0 0 0 0 1 USP13 chr3:179478900 3'AG 179478900 Downstream 38bp
chr1 156880506 156880506 1 + C G LAML 156880502 + 156880482 156880522 41 CGAACGGGACCTGCTACTGCCTGGCTGGCTGGACAGGCCCC CGAACGGGACCTGCTACTGCCTGGGTGGCTGGACAGGCCCC < 41bp 0.552153118190876 0.81424009893308 0.054760158 0.3444401 prediction 0.524173961484409 Functional Gain - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156880502 chr1:156880506 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_106204 0 0 0 0 1 PEAR1 chr1:156880410 3'AG 156880410 Downstream 97bp
chr2 219492826 219492826 1 + C A BLCA 219492822 + 219492802 219492842 41 TCTAAGGATGGAGACATCTTCAACCCAGCCTGCCTCCCCAT TCTAAGGATGGAGACATCTTCAACACAGCCTGCCTCCCCAT < 41bp 0.339260601330703 0.762078716537207 0.31964648 0.07300523 prediction 0.524157433074413 Functional Gain - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219492822 chr2:219492826 nonsynonymous SNV 0.885 1 25 hm5C_associated_SNPs_106205 0 0 0 0 1 PLCD4 chr2:219492752 3'AG 219492752 Downstream 75bp
chr19 54647834 54647834 1 + C A LUAD 54647830 + 54647810 54647850 41 CCTGGCCCAGAAGGTAGATCCTGCCCAGAAGGAGAAGGAAG CCTGGCCCAGAAGGTAGATCCTGCACAGAAGGAGAAGGAAG < 41bp 0.339152223642028 0.762069347883976 0.07012877 0.1975756 prediction 0.524138695767952 Functional Gain - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54647830 chr19:54647834 synonymous SNV . 0 25 hm5C_associated_SNPs_106206 0 0 1 0 2 CNOT3 chr19:54647742 3'AG 54647742 Downstream 93bp
chr19 54647834 54647834 1 + C A LUAD 54647830 + 54647810 54647850 41 CCTGGCCCAGAAGGTAGATCCTGCCCAGAAGGAGAAGGAAG CCTGGCCCAGAAGGTAGATCCTGCACAGAAGGAGAAGGAAG < 41bp 0.339152223642028 0.762069347883976 0.07012877 0.1975756 prediction 0.524138695767952 Functional Gain - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54647830 chr19:54647834 synonymous SNV . 0 25 hm5C_associated_SNPs_106206 0 0 1 0 2 CNOT3 chr19:54647870 5'GT 54647870 Upstream 37bp
chr1 74665428 74665428 1 + C A LIHC 74665424 + 74665404 74665444 41 GAAAAACAGGAACTTGCTTACAACCAACAGCTGTCAGAAAA GAAAAACAGGAACTTGCTTACAACAAACAGCTGTCAGAAAA < 41bp 0.352184722226113 0.762066324044832 0.20163992 0.33222368 prediction 0.524132648089664 Functional Gain - FPGT;FPGT-TNNI3K ENSG00000116783;ENSG00000254685;ENSG00000259030 CDS Human other chr1:74665424 chr1:74665428 nonsynonymous SNV 0.993 0 25 hm5C_associated_SNPs_106208 0 0 1 0 2 FPGT;FPGT-TNNI3K chr1:74665348 3'AG 74665348 Downstream 81bp
chr1 74665428 74665428 1 + C A LIHC 74665424 + 74665404 74665444 41 GAAAAACAGGAACTTGCTTACAACCAACAGCTGTCAGAAAA GAAAAACAGGAACTTGCTTACAACAAACAGCTGTCAGAAAA < 41bp 0.352184722226113 0.762066324044832 0.20163992 0.33222368 prediction 0.524132648089664 Functional Gain - FPGT;FPGT-TNNI3K ENSG00000116783;ENSG00000254685;ENSG00000259030 CDS Human other chr1:74665424 chr1:74665428 nonsynonymous SNV 0.993 0 25 hm5C_associated_SNPs_106208 0 0 1 0 2 FPGT;FPGT-TNNI3K chr1:74665515 5'GT 74665515 Upstream 88bp
chr19 4219596 4219596 1 + T C THYM 4219594 + 4219574 4219614 41 GGCTTGGGCCACAGGTGCAGCGTGAGGCCCTGTTCATGAAG GGCTTGGGCCACAGGTGCAGCGCGAGGCCCTGTTCATGAAG < 41bp 0.506395593288061 0.768450083537517 0.7497333 0.8256204 prediction 0.524108980498911 Functional Gain - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4219594 chr19:4219596 synonymous SNV . 0 23 hm5C_associated_SNPs_106209 0 0 0 0 1 ANKRD24 chr19:4219588 3'AG 4219588 Downstream 9bp
chr7 123303181 123303181 1 + C A UCEC 123303177 + 123303157 123303197 41 AGAAAATGGAAGACAGTTCCCGACCTTCTACCCCACAGAGA AGAAAATGGAAGACAGTTCCCGACATTCTACCCCACAGAGA < 41bp 0.35542995153472 0.762053630731734 0.08103576 0.11652064 prediction 0.524107261463467 Functional Gain - LMOD2 ENSG00000170807 CDS Human protein_coding chr7:123303177 chr7:123303181 nonsynonymous SNV 0.992 2 25 hm5C_associated_SNPs_106210 0 0 0 0 1 LMOD2 chr7:123303257 5'GT 123303257 Upstream 77bp
chr15 28901099 28901099 1 + T C rs200595789 28901097 + 28901077 28901117 41 GTCACCATGACTCGCATCACCCTGAAGGGCAAAATCACCGT GTCACCATGACTCGCATCACCCCGAAGGGCAAAATCACCGT < 41bp 0.498299317769552 0.76202608816965 0.14171427 0.16597414 prediction 0.5240521763393 Functional Gain - HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28901097 chr15:28901099 . . 0 23 hm5C_associated_SNPs_106212 0 0 0 0 1 HERC2P9 chr15:28901172 5'GT 28901172 Upstream 74bp
chr8 6264139 6264139 1 + C G rs182865046 6264135 + 6264115 6264155 41 ATGCCCAGTGCCCGCGCGCGCCGCCAGGCTCGCAAGCACCG ATGCCCAGTGCCCGCGCGCGCCGCGAGGCTCGCAAGCACCG < 41bp 0.504420502045059 0.766444517713517 0.7333329 0.7980952 prediction 0.524048031336916 Functional Gain - MCPH1 ENSG00000246089 ncRNA_exonic Human protein_coding chr8:6264135 chr8:6264139 . . 0 25 hm5C_associated_SNPs_106214 0 0 0 0 1 MCPH1 chr8:6264210 5'GT 6264210 Upstream 72bp
chr17 9580068 9580068 1 + T C COAD 9580066 + 9580046 9580086 41 CCCTTCCTATTTTCCAGGTTCTTGAGTGTCACCTTGGTCTT CCCTTCCTATTTTCCAGGTTCTCGAGTGTCACCTTGGTCTT < 41bp 0.530563746463223 0.792587621151919 0.17219344 0.48200482 prediction 0.524047749377393 Functional Gain - USP43 ENSG00000154914 CDS Human protein_coding chr17:9580066 chr17:9580068 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106215 0 0 0 0 1 USP43 chr17:9580063 3'AG 9580063 Downstream 6bp
chr12 120639200 120639200 1 + T G rs377204353 120639197 + 120639177 120639217 41 GAATTCGGAGTCCCGGTTCCCTGTGCCACCTGGCGAGCTCA GAATTCGGAGTCCCGGTTCCCTGGGCCACCTGGCGAGCTCA < 41bp 0.639607304545851 0.90163078342614 0.5363595 0.9090446 prediction 0.524046957760577 Functional Gain - PXN-AS1 ENSG00000255857 ncRNA_exonic Human antisense chr12:120639197 chr12:120639200 . . 0 24 hm5C_associated_SNPs_106216 0 0 1 0 1 PXN-AS1 chr12:120639229 5'GT 120639229 Upstream 30bp
chr2 20870237 20870237 1 + C A rs145064511 20870233 + 20870213 20870253 41 GTCCCCCGCAGACGAATCGGCAGCCGAAACAGGCCAGAGCT GTCCCCCGCAGACGAATCGGCAGCAGAAACAGGCCAGAGCT < 41bp 0.376600063627182 0.761992612163527 0.25464892 0.2296463 prediction 0.523985224327054 Functional Gain - GDF7 ENSG00000143869 CDS Human protein_coding chr2:20870233 chr2:20870237 synonymous SNV . 0 25 hm5C_associated_SNPs_106220 0 0 0 0 1 GDF7 chr2:20870224 3'AG 20870224 Downstream 14bp
chr2 103095712 103095712 1 + T A UCEC 103095708 + 103095688 103095728 41 AGGAAGCGCGCGTGAACGAGCAGCTCTACATGATGATCTTT AGGAAGCGCGCGTGAACGAGCAGCACTACATGATGATCTTT < 41bp 0.441220073235508 0.761989742431594 0.17340845 0.3195323 prediction 0.523979484863187 Functional Gain - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103095708 chr2:103095712 nonsynonymous SNV 0.991 4 25 hm5C_associated_SNPs_106221 0 0 0 0 1 SLC9A4 chr2:103095761 5'GT 103095761 Upstream 50bp
chr17 59482042 59482042 1 + C A LUSC 59482038 + 59482018 59482058 41 CGAGCGCGATGGCGCGGAGTCAGACGCCTCGTCGTGCGACC CGAGCGCGATGGCGCGGAGTCAGAAGCCTCGTCGTGCGACC < 41bp 0.647031499766079 0.909013012674562 0.5517261 0.80069697 prediction 0.523963025816966 Functional Gain - TBX2 ENSG00000121068 CDS Human protein_coding chr17:59482038 chr17:59482042 nonsynonymous SNV 0.824 3 25 hm5C_associated_SNPs_106222 0 0 0 0 2 TBX2 chr17:59481967 3'AG 59481967 Downstream 76bp
chr17 59482042 59482042 1 + C A LUSC 59482038 + 59482018 59482058 41 CGAGCGCGATGGCGCGGAGTCAGACGCCTCGTCGTGCGACC CGAGCGCGATGGCGCGGAGTCAGAAGCCTCGTCGTGCGACC < 41bp 0.647031499766079 0.909013012674562 0.5517261 0.80069697 prediction 0.523963025816966 Functional Gain - TBX2 ENSG00000121068 CDS Human protein_coding chr17:59482038 chr17:59482042 nonsynonymous SNV 0.824 3 25 hm5C_associated_SNPs_106222 0 0 0 0 2 TBX2 chr17:59482130 5'GT 59482130 Upstream 89bp
chr17 57047012 57047012 1 + C T CESC 57047011 + 57046991 57047031 41 TAGTCCGCCAGGAGATGTTCCCCCATGATCCTGCTGAGGCC TAGTCCGCCAGGAGATGTTCCTCCATGATCCTGCTGAGGCC < 41bp 0.52377803430619 0.785742297032229 0.5572388 0.97994065 prediction 0.523928525452077 Functional Gain - PPM1E ENSG00000175175 CDS Human protein_coding chr17:57047011 chr17:57047012 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_106226 0 0 1 0 1 PPM1E chr17:57047088 5'GT 57047088 Upstream 77bp
chrX 55117804 55117804 1 + T A UCEC 55117800 + 55117780 55117820 41 CTTTTCAACAGGAACTGGCTCTGCTTAAGATAGAGGATGAG CTTTTCAACAGGAACTGGCTCTGCATAAGATAGAGGATGAG < 41bp 0.442334553114624 0.761963684379791 0.026348114 0.07741135 prediction 0.523927368759582 Functional Gain - PAGE2 ENSG00000234068 CDS Human protein_coding chrX:55117800 chrX:55117804 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_106227 0 0 0 0 2 PAGE2 chrX:55117765 3'AG 55117765 Downstream 40bp
chrX 55117804 55117804 1 + T A UCEC 55117800 + 55117780 55117820 41 CTTTTCAACAGGAACTGGCTCTGCTTAAGATAGAGGATGAG CTTTTCAACAGGAACTGGCTCTGCATAAGATAGAGGATGAG < 41bp 0.442334553114624 0.761963684379791 0.026348114 0.07741135 prediction 0.523927368759582 Functional Gain - PAGE2 ENSG00000234068 CDS Human protein_coding chrX:55117800 chrX:55117804 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_106227 0 0 0 0 2 PAGE2 chrX:55117890 5'GT 55117890 Upstream 87bp
chr9 35852855 35852855 1 + T C STAD 35852853 + 35852833 35852873 41 GCCTGTGACCAGCCAGGCATCGTGGTTTTCTGCATCATGGA GCCTGTGACCAGCCAGGCATCGCGGTTTTCTGCATCATGGA < 41bp 0.508500344053993 0.770454854192178 0.5263262 0.8453871 prediction 0.523909020276371 Functional Gain - TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35852853 chr9:35852855 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_106229 0 0 0 0 1 TMEM8B chr9:35852824 3'AG 35852824 Downstream 32bp
chr21 46600256 46600256 1 + C A rs114027650 46600252 + 46600232 46600272 41 GCTTCCCACACAGGTTTTAGCTGACGCTGTCTCACGCCTGG GCTTCCCACACAGGTTTTAGCTGAAGCTGTCTCACGCCTGG < 41bp 0.363327924351645 0.76193097344787 0.40080163 0.5305933 prediction 0.52386194689574 Functional Gain - ADARB1 ENSG00000197381 CDS Human protein_coding chr21:46600252 chr21:46600256 nonsynonymous SNV 0.140 3 25 hm5C_associated_SNPs_106230 0 0 1 0 1 ADARB1 chr21:46600245 3'AG 46600245 Downstream 12bp
chr19 3746624 3746624 1 + C G rs34479626 3746620 + 3746600 3746640 41 CGCCAGTGGCTGGCGCCTGCCTCCCGCCGCAGCACCCGTCG CGCCAGTGGCTGGCGCCTGCCTCCGGCCGCAGCACCCGTCG < 41bp 0.542683095267991 0.804602086157829 0.20406413 0.7752806 prediction 0.523837981779676 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3746620 chr19:3746624 nonsynonymous SNV 0.952 3 25 hm5C_associated_SNPs_106232 0 0 0 0 1 TJP3 chr19:3746693 5'GT 3746693 Upstream 70bp
chr19 45567306 45567306 1 + C G LUAD 45567302 + 45567282 45567322 41 GTCCAGCTCAGAGTCCCGCTCCCGCTCCCGCTCCCCGACCC GTCCAGCTCAGAGTCCCGCTCCCGGTCCCGCTCCCCGACCC < 41bp 0.539438582863146 0.801326592360934 0.23758903 0.38636982 prediction 0.523776018995576 Functional Gain - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45567302 chr19:45567306 synonymous SNV . 0 25 hm5C_associated_SNPs_106238 0 0 1 0 1 CLASRP chr19:45567270 3'AG 45567270 Downstream 37bp
chr4 69974002 69974002 1 + C A LUSC 69973998 + 69973978 69974018 41 CTTCAACACAATGTCGAGTACAGACTTGCTGAATGCATTGA CTTCAACACAATGTCGAGTACAGAATTGCTGAATGCATTGA < 41bp 0.363138046104284 0.761866644213989 0.041679382 0.06930226 prediction 0.523733288427978 Functional Gain - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69973998 chr4:69974002 nonsynonymous SNV 0.023 0 25 hm5C_associated_SNPs_106240 0 0 0 0 1 UGT2B7 chr4:69974040 5'GT 69974040 Upstream 39bp
chr4 49005760 49005760 1 + T G LUAD 49005758 + 49005738 49005778 41 TCTCTCACAAACAGGAACAGCTTCAGCTGCGGGGCTCCTTT TCTCTCACAAACAGGAACAGCTGCAGCTGCGGGGCTCCTTT < 41bp 0.421715300752704 0.761860872851053 0.24278983 0.59845436 prediction 0.523721745702107 Functional Gain - CWH43 ENSG00000109182 CDS Human protein_coding chr4:49005758 chr4:49005760 nonsynonymous SNV 0.017 0 23 hm5C_associated_SNPs_106241 0 0 0 0 1 CWH43 chr4:49005752 3'AG 49005752 Downstream 9bp
chr8 69104662 69104662 1 + T A LUSC 69104658 + 69104638 69104678 41 CACAGCTGCCTGTGCAAACACAGCTTGCAGTGCTTCTGGGG CACAGCTGCCTGTGCAAACACAGCATGCAGTGCTTCTGGGG < 41bp 0.430968376879329 0.761821926156805 0.29315633 0.19464171 prediction 0.523643852313609 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69104658 chr8:69104662 synonymous SNV . 0 25 hm5C_associated_SNPs_106244 0 0 0 0 2 PREX2 chr8:69104570 3'AG 69104570 Downstream 93bp
chr8 69104662 69104662 1 + T A LUSC 69104658 + 69104638 69104678 41 CACAGCTGCCTGTGCAAACACAGCTTGCAGTGCTTCTGGGG CACAGCTGCCTGTGCAAACACAGCATGCAGTGCTTCTGGGG < 41bp 0.430968376879329 0.761821926156805 0.29315633 0.19464171 prediction 0.523643852313609 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69104658 chr8:69104662 synonymous SNV . 0 25 hm5C_associated_SNPs_106244 0 0 0 0 2 PREX2 chr8:69104760 5'GT 69104760 Upstream 99bp
chr16 3714294 3714294 1 - A G UCEC 3714296 - 3714276 3714316 41 CACTCACCCTACTATGAGGCCATGAAGAAGAAAGACACAGA CACTCACCCTACTATGAGGCCACGAAGAAGAAAGACACAGA < 41bp 0.492327657870424 0.761816997080867 0.06343904 0.029789656 prediction 0.523633994161734 Functional Gain - TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3714296 chr16:3714294 nonsynonymous SNV 0.983 2 23 hm5C_associated_SNPs_106246 0 0 1 0 1 TRAP1 chr16:3714275 5'GT 3714275 Upstream 20bp
chr9 124080957 124080957 1 + T C LIHC 124080955 + 124080935 124080975 41 CTCCCCAGGTCTCGGTCCTTCCTGAGGGCGGTGAGACCCCA CTCCCCAGGTCTCGGTCCTTCCCGAGGGCGGTGAGACCCCA < 41bp 0.488228077271966 0.761807585448199 0.21647856 0.38108432 prediction 0.523615170896398 Functional Gain - GSN ENSG00000148180 CDS Human protein_coding chr9:124080955 chr9:124080957 synonymous SNV . 0 23 hm5C_associated_SNPs_106251 0 0 1 0 1 GSN chr9:124080943 3'AG 124080943 Downstream 15bp
chr16 31500027 31500027 1 + T C UCEC 31500025 + 31500005 31500045 41 TTCAACAGCAGCAGCACGCTCTTCACCATGGACATCTACAC TTCAACAGCAGCAGCACGCTCTCCACCATGGACATCTACAC < 41bp 0.489472008297177 0.761789293188811 0.15627569 0.9352482 prediction 0.523578586377621 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500025 chr16:31500027 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_106252 0 0 0 0 2 SLC5A2 chr16:31499943 3'AG 31499943 Downstream 85bp
chr16 31500027 31500027 1 + T C UCEC 31500025 + 31500005 31500045 41 TTCAACAGCAGCAGCACGCTCTTCACCATGGACATCTACAC TTCAACAGCAGCAGCACGCTCTCCACCATGGACATCTACAC < 41bp 0.489472008297177 0.761789293188811 0.15627569 0.9352482 prediction 0.523578586377621 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500025 chr16:31500027 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_106252 0 0 0 0 2 SLC5A2 chr16:31500093 5'GT 31500093 Upstream 67bp
chr20 61273845 61273845 1 + C A rs530768092 61273841 + 61273821 61273861 41 ATGAATGAAGCGGCGCGTGGCTGCCGGGGAGGCCAGAGCGT ATGAATGAAGCGGCGCGTGGCTGCAGGGGAGGCCAGAGCGT < 41bp 0.617791625110527 0.879577048056916 0.32068458 0.70635015 prediction 0.523570845892777 Functional Gain - SLCO4A1 ENSG00000101187 UTR5 Human protein_coding chr20:61273841 chr20:61273845 . . 0 25 hm5C_associated_SNPs_106254 0 0 1 0 1 SLCO4A1 chr20:61273905 5'GT 61273905 Upstream 61bp
chr1 179631398 179631398 1 + T G ESCA 179631396 + 179631376 179631416 41 TGGTGGAAAGAATCAGTATTCATCATGTAAAGAAATGCCAC TGGTGGAAAGAATCAGTATTCAGCATGTAAAGAAATGCCAC < 41bp 0.434111218754399 0.76177741571916 0.13268477 0.3260207 prediction 0.523554831438321 Functional Gain - TDRD5 ENSG00000162782 CDS Human protein_coding chr1:179631396 chr1:179631398 nonsynonymous SNV 0.748 1 23 hm5C_associated_SNPs_106255 0 0 0 0 1 TDRD5 chr1:179631421 5'GT 179631421 Upstream 24bp
chr10 46998932 46998932 1 + C A UCEC 46998928 + 46998908 46998948 41 CCCTGGGCACCCCTGAGCCCCCGCCTTCAGCCCCTGTCCCA CCCTGGGCACCCCTGAGCCCCCGCATTCAGCCCCTGTCCCA < 41bp 0.374380768839215 0.761774173150923 0.050721258 0.022700131 prediction 0.523548346301845 Functional Gain - GPRIN2 ENSG00000204175 CDS Human protein_coding chr10:46998928 chr10:46998932 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_106256 0 0 0 0 1 GPRIN2 chr10:46998875 3'AG 46998875 Downstream 58bp
chr14 76105721 76105721 1 + T C COAD 76105719 + 76105699 76105739 41 ACAACCCTGGTAGTCTATATCATGACACTGGTGGGCATGGT ACAACCCTGGTAGTCTATATCACGACACTGGTGGGCATGGT < 41bp 0.549951649294932 0.811721099142975 0.57564425 0.54961777 prediction 0.523538899696087 Functional Gain - FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76105719 chr14:76105721 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_106257 0 0 1 0 2 FLVCR2 chr14:76105695 3'AG 76105695 Downstream 27bp
chr14 76105721 76105721 1 + T C COAD 76105719 + 76105699 76105739 41 ACAACCCTGGTAGTCTATATCATGACACTGGTGGGCATGGT ACAACCCTGGTAGTCTATATCACGACACTGGTGGGCATGGT < 41bp 0.549951649294932 0.811721099142975 0.57564425 0.54961777 prediction 0.523538899696087 Functional Gain - FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76105719 chr14:76105721 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_106257 0 0 1 0 2 FLVCR2 chr14:76105805 5'GT 76105805 Upstream 85bp
chr18 21083604 21083604 1 + C G rs143953070 21083600 + 21083580 21083620 41 GCCATGGGCGAGGAGGACTACTATCTGGAGCTGTGCGAGCG GCCATGGGCGAGGAGGACTACTATGTGGAGCTGTGCGAGCG < 41bp 0.519214421860647 0.780982854747085 0.11117712 0.30320358 prediction 0.523536865772876 Functional Gain - C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21083600 chr18:21083604 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_106258 0 0 1 0 1 C18orf8 chr18:21083684 5'GT 21083684 Upstream 81bp
chr21 47536302 47536302 1 + C A COAD 47536298 + 47536278 47536318 41 CTCCTGCCCCCAGGGCGTTCCTGGCTTCAAAGGAGAGAAGG CTCCTGCCCCCAGGGCGTTCCTGGATTCAAAGGAGAGAAGG < 41bp 0.355200036718514 0.761734625201877 0.14981711 0.3886265 prediction 0.523469250403755 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47536298 chr21:47536302 synonymous SNV . 0 25 hm5C_associated_SNPs_106263 0 0 0 0 2 COL6A2 chr21:47536291 3'AG 47536291 Downstream 12bp
chr21 47536302 47536302 1 + C A COAD 47536298 + 47536278 47536318 41 CTCCTGCCCCCAGGGCGTTCCTGGCTTCAAAGGAGAGAAGG CTCCTGCCCCCAGGGCGTTCCTGGATTCAAAGGAGAGAAGG < 41bp 0.355200036718514 0.761734625201877 0.14981711 0.3886265 prediction 0.523469250403755 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47536298 chr21:47536302 synonymous SNV . 0 25 hm5C_associated_SNPs_106263 0 0 0 0 2 COL6A2 chr21:47536317 5'GT 47536317 Upstream 16bp
chr5 145393551 145393551 1 + T C LUAD 145393549 + 145393529 145393569 41 GAGATCAGCACCCCAGTGCTCATCAGCTCCAGCAACCCCTC GAGATCAGCACCCCAGTGCTCACCAGCTCCAGCAACCCCTC < 41bp 0.520229815966486 0.781941245895783 0.25087667 0.20472178 prediction 0.523422859858594 Functional Gain - SH3RF2 ENSG00000156463 CDS Human protein_coding chr5:145393549 chr5:145393551 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_106265 0 0 0 0 1 SH3RF2 chr5:145393624 5'GT 145393624 Upstream 74bp
chr19 12921186 12921186 1 + T C rs7247284 12921184 + 12921164 12921204 41 TTCGTGGAGAAACTGCAGGACTTGGATACTGATTATGGCTC TTCGTGGAGAAACTGCAGGACTCGGATACTGATTATGGCTC < 41bp 0.508619513780624 0.770330516036291 0.24756059 0.27325714 prediction 0.523422004511335 Functional Gain - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12921184 chr19:12921186 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_106266 2 0 1 0 2 RNASEH2A chr19:12921131 3'AG 12921131 Downstream 56bp
chr19 12921186 12921186 1 + T C rs7247284 12921184 + 12921164 12921204 41 TTCGTGGAGAAACTGCAGGACTTGGATACTGATTATGGCTC TTCGTGGAGAAACTGCAGGACTCGGATACTGATTATGGCTC < 41bp 0.508619513780624 0.770330516036291 0.24756059 0.27325714 prediction 0.523422004511335 Functional Gain - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12921184 chr19:12921186 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_106266 2 0 1 0 2 RNASEH2A chr19:12921218 5'GT 12921218 Upstream 33bp
chr17 8169597 8169597 1 + T C PAAD 8169595 + 8169575 8169615 41 GATGTCAGTGACGGAGGCCTCGTCACATGCCTGCTGGAGAT GATGTCAGTGACGGAGGCCTCGCCACATGCCTGCTGGAGAT < 41bp 0.537368450887634 0.79907620531287 0.33540922 0.92343384 prediction 0.523415508850474 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8169595 chr17:8169597 nonsynonymous SNV 0.616 0 23 hm5C_associated_SNPs_106267 0 0 1 0 2 PFAS chr17:8169552 3'AG 8169552 Downstream 46bp
chr17 8169597 8169597 1 + T C PAAD 8169595 + 8169575 8169615 41 GATGTCAGTGACGGAGGCCTCGTCACATGCCTGCTGGAGAT GATGTCAGTGACGGAGGCCTCGCCACATGCCTGCTGGAGAT < 41bp 0.537368450887634 0.79907620531287 0.33540922 0.92343384 prediction 0.523415508850474 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8169595 chr17:8169597 nonsynonymous SNV 0.616 0 23 hm5C_associated_SNPs_106267 0 0 1 0 2 PFAS chr17:8169671 5'GT 8169671 Upstream 75bp
chr15 76633630 76633630 1 + C A ESCA 76633626 + 76633606 76633646 41 CCAGAGCGACCTGGACCAACCCGCCTTCCAACAGCTGGTGA CCAGAGCGACCTGGACCAACCCGCATTCCAACAGCTGGTGA < 41bp 0.35825388697984 0.761692395340983 0.19508556 0.31388894 prediction 0.523384790681966 Functional Gain - ISL2 ENSG00000159556 CDS Human protein_coding chr15:76633626 chr15:76633630 synonymous SNV . 0 25 hm5C_associated_SNPs_106269 0 0 0 0 1 ISL2 chr15:76633642 5'GT 76633642 Upstream 13bp
chr10 96580365 96580365 1 + T A SKCM 96580361 + 96580341 96580381 41 GCACAACCCTGAGATATGCTCTCCTTCTCCTGCTGAAGCAC GCACAACCCTGAGATATGCTCTCCATCTCCTGCTGAAGCAC < 41bp 0.404900524511558 0.761663002486791 0.12691417 0.91849077 prediction 0.523326004973581 Functional Gain - CYP2C19 ENSG00000165841 CDS Human protein_coding chr10:96580361 chr10:96580365 nonsynonymous SNV 0.007 3 25 hm5C_associated_SNPs_106271 0 0 0 0 1 CYP2C19 chr10:96580394 5'GT 96580394 Upstream 30bp
chr6 27806787 27806787 1 + C G HNSC 27806786 + 27806766 27806806 41 GCACGCGGTGTCGGAGGGCACCAAGGCCGTCACCAAGTACA GCACGCGGTGTCGGAGGGCACGAAGGCCGTCACCAAGTACA < 41bp 0.557965593368234 0.819617280179042 0.6584977 0.8359293 prediction 0.523303373621614 Functional Gain - HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806786 chr6:27806787 synonymous SNV . 0 22 hm5C_associated_SNPs_106272 0 0 1 0 2 HIST1H2BN chr6:27806816 5'GT 27806816 Upstream 30bp
chr6 27806787 27806787 1 + C G HNSC 27806786 + 27806766 27806806 41 GCACGCGGTGTCGGAGGGCACCAAGGCCGTCACCAAGTACA GCACGCGGTGTCGGAGGGCACGAAGGCCGTCACCAAGTACA < 41bp 0.557965593368234 0.819617280179042 0.6584977 0.8359293 prediction 0.523303373621614 Functional Gain - HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806786 chr6:27806787 synonymous SNV . 0 22 hm5C_associated_SNPs_106272 0 0 1 0 2 HIST1H2BN chr6:27806843 5'GT 27806843 Upstream 57bp
chr7 89874804 89874804 1 + C A rs17862129 89874800 + 89874780 89874820 41 ATCCGGCATCAGGAACAAGTCTAGCAGTTCCAGTCAAATCC ATCCGGCATCAGGAACAAGTCTAGAAGTTCCAGTCAAATCC < 41bp 0.649675582066999 0.911324150173281 0.2800237 0.2781483 prediction 0.523297136212564 Functional Gain - CFAP69 ENSG00000105792 CDS Human protein_coding chr7:89874800 chr7:89874804 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_106274 0 0 1 0 1 CFAP69 chr7:89874858 5'GT 89874858 Upstream 55bp
chr17 30800908 30800908 1 + C T GBM 30800907 + 30800887 30800927 41 GGTTATGACTCCATCGACAGCCCCAAGGCCATCACATCTCT GGTTATGACTCCATCGACAGCTCCAAGGCCATCACATCTCT < 41bp 0.48295772761667 0.761640845611325 0.018376023 0.5617387 prediction 0.523281691222649 Functional Gain - PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30800907 chr17:30800908 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_106275 0 0 1 0 2 PSMD11 chr17:30800819 3'AG 30800819 Downstream 90bp
chr17 30800908 30800908 1 + C T GBM 30800907 + 30800887 30800927 41 GGTTATGACTCCATCGACAGCCCCAAGGCCATCACATCTCT GGTTATGACTCCATCGACAGCTCCAAGGCCATCACATCTCT < 41bp 0.48295772761667 0.761640845611325 0.018376023 0.5617387 prediction 0.523281691222649 Functional Gain - PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30800907 chr17:30800908 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_106275 0 0 1 0 2 PSMD11 chr17:30800963 5'GT 30800963 Upstream 56bp
chr1 160385911 160385911 1 + T G LUAD 160385908 + 160385888 160385928 41 TGGGGGCCGAGGGGACAAGTCGGTGACAATCCAGGCTCCCG TGGGGGCCGAGGGGACAAGTCGGGGACAATCCAGGCTCCCG < 41bp 0.653415311967487 0.915051516305245 0.88386387 0.93048203 prediction 0.523272408675515 Functional Gain - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160385908 chr1:160385911 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_106276 0 0 0 0 2 VANGL2 chr1:160385852 3'AG 160385852 Downstream 60bp
chr1 160385911 160385911 1 + T G LUAD 160385908 + 160385888 160385928 41 TGGGGGCCGAGGGGACAAGTCGGTGACAATCCAGGCTCCCG TGGGGGCCGAGGGGACAAGTCGGGGACAATCCAGGCTCCCG < 41bp 0.653415311967487 0.915051516305245 0.88386387 0.93048203 prediction 0.523272408675515 Functional Gain - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160385908 chr1:160385911 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_106276 0 0 0 0 2 VANGL2 chr1:160385972 5'GT 160385972 Upstream 62bp
chr5 52344260 52344260 1 + T C COAD 52344258 + 52344238 52344278 41 ACAACGGGTGTGTGTTCTGACATCAGTCCTGATTTTCAGCT ACAACGGGTGTGTGTTCTGACACCAGTCCTGATTTTCAGCT < 41bp 0.523716655651537 0.78533124713516 0.24788976 0.20194292 prediction 0.523229182967245 Functional Gain - ITGA2 ENSG00000164171 CDS Human protein_coding chr5:52344258 chr5:52344260 nonsynonymous SNV 0.414 2 23 hm5C_associated_SNPs_106278 0 0 0 0 1 ITGA2 chr5:52344193 3'AG 52344193 Downstream 68bp
chr17 45286881 45286881 1 + T C UCEC 45286879 + 45286859 45286899 41 CACCAGCCCCTGCCCCAGCTCCTGAGGCTCCCAAGGAACCT CACCAGCCCCTGCCCCAGCTCCCGAGGCTCCCAAGGAACCT < 41bp 0.520697530193145 0.782272491579603 0.30251998 0.31640324 prediction 0.523149922772916 Functional Gain - MYL4 ENSG00000198336 CDS Human protein_coding chr17:45286879 chr17:45286881 synonymous SNV . 0 23 hm5C_associated_SNPs_106281 0 0 1 0 1 MYL4 chr17:45286923 5'GT 45286923 Upstream 43bp
chr14 70171343 70171343 1 + T C UCEC 70171341 + 70171321 70171361 41 ATAAAGACACCCACACATCACTTGGGGTCCCCACGCTGTCT ATAAAGACACCCACACATCACTCGGGGTCCCCACGCTGTCT < 41bp 0.524079156746182 0.785603039361362 0.6437639 0.44523436 prediction 0.523047765230361 Functional Gain - SUSD6 ENSG00000100647 CDS Human protein_coding chr14:70171341 chr14:70171343 synonymous SNV . 0 23 hm5C_associated_SNPs_106285 0 0 1 0 1 SUSD6 chr14:70171321 3'AG 70171321 Downstream 23bp
chr18 28986106 28986106 1 + T A LUAD 28986102 + 28986082 28986122 41 GATTTTATGAAATCCCAATCCTGGTGAAGGACAGCTATAAC GATTTTATGAAATCCCAATCCTGGAGAAGGACAGCTATAAC < 41bp 0.599582035780633 0.861103193887038 0.7464028 0.74197954 prediction 0.523042316212811 Functional Gain - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28986102 chr18:28986106 nonsynonymous SNV 0.957 3 25 hm5C_associated_SNPs_106287 0 0 0 0 1 DSG4 chr18:28986040 3'AG 28986040 Downstream 67bp
chr8 39775455 39775455 1 + T A LUAD 39775451 + 39775431 39775471 41 TTGCTAAACATCTGCCTGATCTCATAGAGTCTGGCCAGCTT TTGCTAAACATCTGCCTGATCTCAAAGAGTCTGGCCAGCTT < 41bp 0.424880587868226 0.761504197105375 0.10573435 0.27589813 prediction 0.523008394210749 Functional Gain - IDO1 ENSG00000131203 CDS Human protein_coding chr8:39775451 chr8:39775455 nonsynonymous SNV 0.063 4 25 hm5C_associated_SNPs_106289 0 0 0 0 2 IDO1 chr8:39775394 3'AG 39775394 Downstream 62bp
chr8 39775455 39775455 1 + T A LUAD 39775451 + 39775431 39775471 41 TTGCTAAACATCTGCCTGATCTCATAGAGTCTGGCCAGCTT TTGCTAAACATCTGCCTGATCTCAAAGAGTCTGGCCAGCTT < 41bp 0.424880587868226 0.761504197105375 0.10573435 0.27589813 prediction 0.523008394210749 Functional Gain - IDO1 ENSG00000131203 CDS Human protein_coding chr8:39775451 chr8:39775455 nonsynonymous SNV 0.063 4 25 hm5C_associated_SNPs_106289 0 0 0 0 2 IDO1 chr8:39775489 5'GT 39775489 Upstream 35bp
chr5 153078626 153078626 1 + T A LUSC 153078622 + 153078602 153078642 41 GGAATGGCATGGTGGGAGAGCTGGTCTATGGAGTAAGTTCA GGAATGGCATGGTGGGAGAGCTGGACTATGGAGTAAGTTCA < 41bp 0.449057214477191 0.761498384769902 0.4848498 0.3687964 prediction 0.522996769539805 Functional Gain - GRIA1 ENSG00000155511 CDS Human protein_coding chr5:153078622 chr5:153078626 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_106290 0 0 0 0 1 GRIA1 chr5:153078633 5'GT 153078633 Upstream 8bp
chr1 241959622 241959622 1 + T C UCEC 241959620 + 241959600 241959640 41 CGTAGAAGCCCAAAAGGACTCTTCAGATGGCATTACAGGAA CGTAGAAGCCCAAAAGGACTCTCCAGATGGCATTACAGGAA < 41bp 0.55992665614574 0.821413202877511 0.29645196 0.92460227 prediction 0.522973093463542 Functional Gain - WDR64 ENSG00000162843 CDS Human protein_coding chr1:241959620 chr1:241959622 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_106292 0 0 0 0 1 WDR64 chr1:241959559 3'AG 241959559 Downstream 64bp
chr3 51977545 51977545 1 + C G rs536768535 51977544 + 51977524 51977564 41 ATGTCCACTCAGCAGCAACCCCGGGACCCAGGTGAGCTGCA ATGTCCACTCAGCAGCAACCCGGGGACCCAGGTGAGCTGCA < 41bp 0.56305020230448 0.824506862089254 0.47905183 0.93214786 prediction 0.522913319569549 Functional Gain - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51977544 chr3:51977545 synonymous SNV . 0 22 hm5C_associated_SNPs_106294 0 0 0 0 1 PARP3 chr3:51977554 5'GT 51977554 Upstream 10bp
chr9 82187749 82187749 1 + C A LGG 82187745 + 82187725 82187765 41 AGATGTACCCGCAGACCAGACACCCAGTGAGTGCGGGCGGC AGATGTACCCGCAGACCAGACACCAAGTGAGTGCGGGCGGC < 41bp 0.386468609902594 0.761424533584168 0.04422003 0.10467154 prediction 0.522849067168335 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82187745 chr9:82187749 nonsynonymous SNV 0.993 3 25 hm5C_associated_SNPs_106300 0 0 0 0 1 TLE4 chr9:82187750 5'GT 82187750 Upstream 2bp
chr17 27061954 27061954 1 + C T THCA 27061953 + 27061933 27061973 41 AACATCCTGCTTGACAAACACCGCATGGTCGTCAAGATCGG AACATCCTGCTTGACAAACACTGCATGGTCGTCAAGATCGG < 41bp 0.510794498525073 0.772196095633876 0.30674273 0.8231033 prediction 0.522803194217605 Functional Gain - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27061953 chr17:27061954 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_106301 0 0 1 0 1 NEK8 chr17:27062022 5'GT 27062022 Upstream 69bp
chr17 48916922 48916922 1 + C A HNSC 48916918 + 48916898 48916938 41 TGGGACCAAGAGCTGCGTGGCGGCCCGCTACATGGACGTGA TGGGACCAAGAGCTGCGTGGCGGCACGCTACATGGACGTGA < 41bp 0.359117391493132 0.761391726783835 0.23426715 0.41309553 prediction 0.522783453567671 Functional Gain - WFIKKN2 ENSG00000173714 CDS Human protein_coding chr17:48916918 chr17:48916922 synonymous SNV . 0 25 hm5C_associated_SNPs_106305 0 0 0 0 1 WFIKKN2 chr17:48916860 3'AG 48916860 Downstream 63bp
chr12 69991488 69991488 1 + T C LIHC 69991486 + 69991466 69991506 41 ATGAAGCAGAAAGATCATTGCATGATGCTCTTTGTGTTCTT ATGAAGCAGAAAGATCATTGCACGATGCTCTTTGTGTTCTT < 41bp 0.550415359552314 0.811805950702354 0.17254794 0.13324371 prediction 0.522781182300079 Functional Gain - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69991486 chr12:69991488 synonymous SNV . 0 23 hm5C_associated_SNPs_106306 0 0 1 0 2 CCT2 chr12:69991418 3'AG 69991418 Downstream 71bp
chr12 69991488 69991488 1 + T C LIHC 69991486 + 69991466 69991506 41 ATGAAGCAGAAAGATCATTGCATGATGCTCTTTGTGTTCTT ATGAAGCAGAAAGATCATTGCACGATGCTCTTTGTGTTCTT < 41bp 0.550415359552314 0.811805950702354 0.17254794 0.13324371 prediction 0.522781182300079 Functional Gain - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69991486 chr12:69991488 synonymous SNV . 0 23 hm5C_associated_SNPs_106306 0 0 1 0 2 CCT2 chr12:69991546 5'GT 69991546 Upstream 59bp
chr1 19029612 19029612 1 + C G LUAD 19029608 + 19029588 19029628 41 ATGGGGGCAGCACTGTGCACCGGCCTCAGCCCCTGCCACCG ATGGGGGCAGCACTGTGCACCGGCGTCAGCCCCTGCCACCG < 41bp 0.459234298263761 0.761383926865256 0.22293228 0.8880458 prediction 0.522767853730512 Functional Gain - PAX7 ENSG00000009709 CDS Human protein_coding chr1:19029608 chr1:19029612 nonsynonymous SNV 0.993 5 25 hm5C_associated_SNPs_106308 0 0 0 0 1 PAX7 chr1:19029588 3'AG 19029588 Downstream 25bp
chr12 120990388 120990388 1 + T G PRAD 120990385 + 120990365 120990405 41 CTGAACCACTTGTTGAATTTCACTTTTGAACCCCGTGGCCA CTGAACCACTTGTTGAATTTCACGTTTGAACCCCGTGGCCA < 41bp 0.372316986059628 0.76138071778909 0.08580193 0.08037579 prediction 0.522761435578179 Functional Gain - RNF10 ENSG00000022840 CDS Human protein_coding chr12:120990385 chr12:120990388 synonymous SNV . 0 24 hm5C_associated_SNPs_106309 0 0 1 0 1 RNF10 chr12:120990302 3'AG 120990302 Downstream 87bp
chr12 132281832 132281832 1 + C G HNSC 132281831 + 132281811 132281851 41 GCAGCGCCCCGGCCCGCGGCCCCCGCGGCCCACTCGGCGCA GCAGCGCCCCGGCCCGCGGCCGCCGCGGCCCACTCGGCGCA < 41bp 0.574933552025789 0.83630920780506 0.07613781 0.18051824 prediction 0.522751311558542 Functional Gain - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132281831 chr12:132281832 nonsynonymous SNV 0.030 1 22 hm5C_associated_SNPs_106311 0 0 1 0 1 SFSWAP chr12:132281905 5'GT 132281905 Upstream 74bp
chr9 131846992 131846992 1 + T G HNSC 131846989 + 131846969 131847009 41 TGCCTACCTGAGCCTCAGCCCTGTATTTGTCATCGTCGGTT TGCCTACCTGAGCCTCAGCCCTGGATTTGTCATCGTCGGTT < 41bp 0.648657617002447 0.910003065253097 0.0966557 0.17422137 prediction 0.5226908965013 Functional Gain - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846989 chr9:131846992 nonsynonymous SNV 0.920 1 24 hm5C_associated_SNPs_106316 0 0 1 0 2 DOLPP1 chr9:131846947 3'AG 131846947 Downstream 46bp
chr9 131846992 131846992 1 + T G HNSC 131846989 + 131846969 131847009 41 TGCCTACCTGAGCCTCAGCCCTGTATTTGTCATCGTCGGTT TGCCTACCTGAGCCTCAGCCCTGGATTTGTCATCGTCGGTT < 41bp 0.648657617002447 0.910003065253097 0.0966557 0.17422137 prediction 0.5226908965013 Functional Gain - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846989 chr9:131846992 nonsynonymous SNV 0.920 1 24 hm5C_associated_SNPs_106316 0 0 1 0 2 DOLPP1 chr9:131847047 5'GT 131847047 Upstream 56bp
chr3 183858504 183858504 1 + C G BLCA 183858503 + 183858483 183858523 41 TCACCAACAGTGTCATTGGCCCCGGCTGCCACATTGGTGAG TCACCAACAGTGTCATTGGCCGCGGCTGCCACATTGGTGAG < 41bp 0.58463685237825 0.84597374124585 0.09667489 0.27455324 prediction 0.5226737777352 Functional Gain - EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183858503 chr3:183858504 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_106317 0 0 1 0 1 EIF2B5 chr3:183858518 5'GT 183858518 Upstream 15bp
chr4 77871016 77871016 1 + T G rs873090 77871014 + 77870994 77871034 41 CTAGCAGCAGCCGGAGTCGGCGTAAAGCACCCGGGCGCAGC CTAGCAGCAGCCGGAGTCGGCGGAAAGCACCCGGGCGCAGC < 41bp 0.598342464598945 0.859671307683284 0.85382795 0.90067476 prediction 0.522657686168676 Functional Gain - SEPT11 ENSG00000138758 UTR5 Human protein_coding chr4:77871014 chr4:77871016 . . 0 23 hm5C_associated_SNPs_106319 0 0 1 0 1 SEPT11 chr4:77871083 5'GT 77871083 Upstream 68bp
chr12 53677280 53677280 1 + T C STAD 53677278 + 53677258 53677298 41 AGTGAAGCCAAGGCCTTTTGCTTGGAGGCCCTAAAACTTAC AGTGAAGCCAAGGCCTTTTGCTCGGAGGCCCTAAAACTTAC < 41bp 0.516577994808866 0.777906447444216 0.045870155 0.038759083 prediction 0.522656905270699 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53677278 chr12:53677280 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_106320 0 0 1 0 1 ESPL1 chr12:53677322 5'GT 53677322 Upstream 43bp
chr16 3705465 3705465 1 + C G rs77254040 3705464 + 3705444 3705484 41 AAGATCGCAGCCTTCAACATCCAGACATTTGGGGAGACCAA AAGATCGCAGCCTTCAACATCGAGACATTTGGGGAGACCAA < 41bp 0.44966940283 0.761327987626648 0.38552782 0.8881037 prediction 0.522655975253296 Functional Gain - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3705464 chr16:3705465 nonsynonymous SNV 0.991 1 22 hm5C_associated_SNPs_106321 0 0 1 0 2 DNASE1 chr16:3705374 3'AG 3705374 Downstream 92bp
chr16 3705465 3705465 1 + C G rs77254040 3705464 + 3705444 3705484 41 AAGATCGCAGCCTTCAACATCCAGACATTTGGGGAGACCAA AAGATCGCAGCCTTCAACATCGAGACATTTGGGGAGACCAA < 41bp 0.44966940283 0.761327987626648 0.38552782 0.8881037 prediction 0.522655975253296 Functional Gain - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3705464 chr16:3705465 nonsynonymous SNV 0.991 1 22 hm5C_associated_SNPs_106321 0 0 1 0 2 DNASE1 chr16:3705521 5'GT 3705521 Upstream 57bp
chr9 140136447 140136447 1 + T A LUAD 140136443 + 140136423 140136463 41 TGCGCTCGGGGCCCTTCGGGCAGATCTTCCGGCCGGACAAC TGCGCTCGGGGCCCTTCGGGCAGAACTTCCGGCCGGACAAC < 41bp 0.546843253378617 0.808154364850887 0.75268483 0.7000168 prediction 0.52262222294454 Functional Gain - TUBB4B ENSG00000188229 CDS Human protein_coding chr9:140136443 chr9:140136447 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_106325 0 0 1 0 2 TUBB4B chr9:140136363 3'AG 140136363 Downstream 85bp
chr9 140136447 140136447 1 + T A LUAD 140136443 + 140136423 140136463 41 TGCGCTCGGGGCCCTTCGGGCAGATCTTCCGGCCGGACAAC TGCGCTCGGGGCCCTTCGGGCAGAACTTCCGGCCGGACAAC < 41bp 0.546843253378617 0.808154364850887 0.75268483 0.7000168 prediction 0.52262222294454 Functional Gain - TUBB4B ENSG00000188229 CDS Human protein_coding chr9:140136443 chr9:140136447 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_106325 0 0 1 0 2 TUBB4B chr9:140136473 5'GT 140136473 Upstream 27bp
chr21 47660784 47660784 1 + C T SKCM 47660783 + 47660763 47660803 41 CAAACACTGCGCCAAGAGCTCCTCAGCAGAAGCTCCTCGCA CAAACACTGCGCCAAGAGCTCTTCAGCAGAAGCTCCTCGCA < 41bp 0.495769624696701 0.761307545709262 0.118138015 0.13071012 prediction 0.522615091418524 Functional Gain - MCM3AP ENSG00000160294 CDS Human protein_coding chr21:47660783 chr21:47660784 synonymous SNV . 0 22 hm5C_associated_SNPs_106326 0 0 1 4 1 MCM3AP chr21:47660748 3'AG 47660748 Downstream 37bp
chr7 150747925 150747925 1 + C G LUSC 150747924 + 150747904 150747944 41 TGAGCCAGAGCCCTCTGATCCCCTAGGCTCCCCCAGCCCCA TGAGCCAGAGCCCTCTGATCCGCTAGGCTCCCCCAGCCCCA < 41bp 0.445510589263852 0.761265102580575 0.33811504 0.34312242 prediction 0.52253020516115 Functional Gain - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150747924 chr7:150747925 synonymous SNV . 0 22 hm5C_associated_SNPs_106332 0 0 1 0 1 ASIC3 chr7:150747845 3'AG 150747845 Downstream 81bp
chr1 171755160 171755160 1 + C G SARC 171755156 + 171755136 171755176 41 ATGAAAGCATGGACCACATCCAAGCTGAGCTGTCGGCTAGA ATGAAAGCATGGACCACATCCAAGGTGAGCTGTCGGCTAGA < 41bp 0.545581950971579 0.806846444616912 0.33457124 0.79015243 prediction 0.522528987290666 Functional Gain - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171755156 chr1:171755160 nonsynonymous SNV 0.062 1 25 hm5C_associated_SNPs_106333 0 0 1 0 1 METTL13 chr1:171755218 5'GT 171755218 Upstream 59bp
chr12 126137139 126137139 1 + C G LUSC 126137138 + 126137118 126137158 41 AGACAAAAGGGCCATCGTCTCCACAGCTGCTGCCCTGGATG AGACAAAAGGGCCATCGTCTCGACAGCTGCTGCCCTGGATG < 41bp 0.46012649237234 0.761253550072887 0.24957448 0.9036771 prediction 0.522507100145774 Functional Gain - TMEM132B ENSG00000139364 CDS Human protein_coding chr12:126137138 chr12:126137139 synonymous SNV . 0 22 hm5C_associated_SNPs_106335 0 0 0 0 1 TMEM132B chr12:126137178 5'GT 126137178 Upstream 40bp
chr10 11894124 11894124 1 + C G COAD 11894120 + 11894100 11894140 41 AGACGCATCTGACATGAACTCAGACACGTCCCCCAGCTGCA AGACGCATCTGACATGAACTCAGAGACGTCCCCCAGCTGCA < 41bp 0.471509906089062 0.761243706017311 0.5926588 0.8958478 prediction 0.522487412034621 Functional Gain - PROSER2 ENSG00000148426 CDS Human protein_coding chr10:11894120 chr10:11894124 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_106336 0 0 1 0 1 PROSER2 chr10:11894214 5'GT 11894214 Upstream 91bp
chrX 47035947 47035947 1 + C T SARC 47035946 + 47035926 47035966 41 GTGTCGATGCACTACAGTGACCCCAAGCCCAAGATCAATGA GTGTCGATGCACTACAGTGACTCCAAGCCCAAGATCAATGA < 41bp 0.529404592810056 0.790645433388734 0.15563595 0.9533839 prediction 0.522481681157356 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47035946 chrX:47035947 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_106337 0 0 1 0 2 RBM10 chrX:47035899 3'AG 47035899 Downstream 49bp
chrX 47035947 47035947 1 + C T SARC 47035946 + 47035926 47035966 41 GTGTCGATGCACTACAGTGACCCCAAGCCCAAGATCAATGA GTGTCGATGCACTACAGTGACTCCAAGCCCAAGATCAATGA < 41bp 0.529404592810056 0.790645433388734 0.15563595 0.9533839 prediction 0.522481681157356 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47035946 chrX:47035947 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_106337 0 0 1 0 2 RBM10 chrX:47035985 5'GT 47035985 Upstream 39bp
chr1 153963264 153963264 1 + C A rs71626798 153963260 + 153963240 153963280 41 TTTCCGGCGGTGACGACCTACGCACACGAGAACATGCCTGT TTTCCGGCGGTGACGACCTACGCAAACGAGAACATGCCTGT < 41bp 0.439877589582953 0.761210648800155 0.02899295 0.05455786 prediction 0.522421297600311 Functional Gain - RPS27 ENSG00000177954 UTR5 Human protein_coding chr1:153963260 chr1:153963264 . . 0 25 hm5C_associated_SNPs_106339 0 0 1 0 1 RPS27 chr1:153963278 5'GT 153963278 Upstream 15bp
chr5 169129394 169129394 1 + T C COAD 169129392 + 169129372 169129412 41 ACACAGAGGAATGTGGAAGTCATCATGTGTGTGTGCGCGGA ACACAGAGGAATGTGGAAGTCACCATGTGTGTGTGCGCGGA < 41bp 0.51457451952151 0.775767653328084 0.10481945 0.13286579 prediction 0.522386267613148 Functional Gain - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169129392 chr5:169129394 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_106340 0 0 1 0 2 DOCK2 chr5:169129307 3'AG 169129307 Downstream 88bp
chr5 169129394 169129394 1 + T C COAD 169129392 + 169129372 169129412 41 ACACAGAGGAATGTGGAAGTCATCATGTGTGTGTGCGCGGA ACACAGAGGAATGTGGAAGTCACCATGTGTGTGTGCGCGGA < 41bp 0.51457451952151 0.775767653328084 0.10481945 0.13286579 prediction 0.522386267613148 Functional Gain - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169129392 chr5:169129394 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_106340 0 0 1 0 2 DOCK2 chr5:169129431 5'GT 169129431 Upstream 38bp
chr20 39974584 39974584 1 + C G rs41277014 39974580 + 39974560 39974600 41 GGACGGCTCGTTCCGGTGCTCACCCTTCCACGTGCGTTTTG GGACGGCTCGTTCCGGTGCTCACCGTTCCACGTGCGTTTTG < 41bp 0.546697506081865 0.807879602454482 0.0330967 0.08266184 prediction 0.522364192745234 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39974580 chr20:39974584 synonymous SNV . 0 25 hm5C_associated_SNPs_106341 0 0 0 0 1 LPIN3 chr20:39974635 5'GT 39974635 Upstream 52bp
chr12 65639551 65639551 1 + T C STAD 65639549 + 65639529 65639569 41 TTGCAGTAGACAAAAATTCACGTGAGGTAAAGTAACTTTTG TTGCAGTAGACAAAAATTCACGCGAGGTAAAGTAACTTTTG < 41bp 0.493771692023458 0.76115330028965 0.21708554 0.16007265 prediction 0.5223066005793 Functional Gain - LEMD3 ENSG00000174106 CDS Human protein_coding chr12:65639549 chr12:65639551 synonymous SNV . 0 23 hm5C_associated_SNPs_106346 0 0 1 0 2 LEMD3 chr12:65639554 5'GT 65639554 Upstream 4bp
chr12 65639551 65639551 1 + T C STAD 65639549 + 65639529 65639569 41 TTGCAGTAGACAAAAATTCACGTGAGGTAAAGTAACTTTTG TTGCAGTAGACAAAAATTCACGCGAGGTAAAGTAACTTTTG < 41bp 0.493771692023458 0.76115330028965 0.21708554 0.16007265 prediction 0.5223066005793 Functional Gain - LEMD3 ENSG00000174106 CDS Human protein_coding chr12:65639549 chr12:65639551 synonymous SNV . 0 23 hm5C_associated_SNPs_106346 0 0 1 0 2 LEMD3 chr12:65639641 5'GT 65639641 Upstream 91bp
chr1 26153118 26153118 1 + C A LAML 26153114 + 26153094 26153134 41 TCCCTGGTCCAGGAGTGATACGCGCCCCCTGAGGCACACCT TCCCTGGTCCAGGAGTGATACGCGACCCCTGAGGCACACCT < 41bp 0.539627848145214 0.800771100177188 0.10318351 0.21576342 prediction 0.522286504063947 Functional Gain - MTFR1L ENSG00000117640 CDS Human protein_coding chr1:26153114 chr1:26153118 synonymous SNV . 0 25 hm5C_associated_SNPs_106347 0 0 1 0 1 MTFR1L chr1:26153106 3'AG 26153106 Downstream 13bp
chr5 108281869 108281869 1 + T C UCEC 108281867 + 108281847 108281887 41 TATCCAAATTTGAATCTATTCGTCATTCAATTGCTGGAATA TATCCAAATTTGAATCTATTCGCCATTCAATTGCTGGAATA < 41bp 0.535526986807159 0.796628718262433 0.010153055 0.040229708 prediction 0.522203462910547 Functional Gain - FER ENSG00000151422 CDS Human protein_coding chr5:108281867 chr5:108281869 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_106349 0 0 1 1 2 FER chr5:108281831 3'AG 108281831 Downstream 39bp
chr5 108281869 108281869 1 + T C UCEC 108281867 + 108281847 108281887 41 TATCCAAATTTGAATCTATTCGTCATTCAATTGCTGGAATA TATCCAAATTTGAATCTATTCGCCATTCAATTGCTGGAATA < 41bp 0.535526986807159 0.796628718262433 0.010153055 0.040229708 prediction 0.522203462910547 Functional Gain - FER ENSG00000151422 CDS Human protein_coding chr5:108281867 chr5:108281869 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_106349 0 0 1 1 2 FER chr5:108281923 5'GT 108281923 Upstream 55bp
chr2 71753444 71753444 1 + T G UCEC 71753442 + 71753422 71753462 41 CTGCGAGGAGCCCACTTCTGCCTGAAGGTCTTCCGGGCCGA CTGCGAGGAGCCCACTTCTGCCGGAAGGTCTTCCGGGCCGA < 41bp 0.470389583693285 0.761091401298471 0.078279585 0.41234484 prediction 0.522182802596942 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71753442 chr2:71753444 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106351 0 0 0 0 1 DYSF chr2:71753350 3'AG 71753350 Downstream 95bp
chr15 40557097 40557097 1 + C T SKCM 40557096 + 40557076 40557116 41 AGGCAAGTTTGTGGGCCTCCCCCCACAATGGCAGAACATCC AGGCAAGTTTGTGGGCCTCCCTCCACAATGGCAGAACATCC < 41bp 0.523752014631704 0.784828518298143 0.11997488 0.9489467 prediction 0.522153007332878 Functional Gain - BUB1B-PAK6;PAK6 ENSG00000137843;ENSG00000259288 CDS Human protein_coding chr15:40557096 chr15:40557097 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_106352 0 0 0 0 1 BUB1B-PAK6;PAK6 chr15:40557190 5'GT 40557190 Upstream 94bp
chr1 17597453 17597453 1 + C A LUAD 17597449 + 17597429 17597469 41 GGATCATGACGCCCAGCACTCTGCCACCCCTAGAGGTGTAT GGATCATGACGCCCAGCACTCTGCAACCCCTAGAGGTGTAT < 41bp 0.336760064911376 0.761053907060837 0.19772965 0.2207545 prediction 0.522107814121675 Functional Gain - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17597449 chr1:17597453 nonsynonymous SNV 0.828 0 25 hm5C_associated_SNPs_106353 0 0 0 0 2 PADI3 chr1:17597374 3'AG 17597374 Downstream 80bp
chr1 17597453 17597453 1 + C A LUAD 17597449 + 17597429 17597469 41 GGATCATGACGCCCAGCACTCTGCCACCCCTAGAGGTGTAT GGATCATGACGCCCAGCACTCTGCAACCCCTAGAGGTGTAT < 41bp 0.336760064911376 0.761053907060837 0.19772965 0.2207545 prediction 0.522107814121675 Functional Gain - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17597449 chr1:17597453 nonsynonymous SNV 0.828 0 25 hm5C_associated_SNPs_106353 0 0 0 0 2 PADI3 chr1:17597477 5'GT 17597477 Upstream 25bp
chr2 220371035 220371035 1 + C G rs1046474 220371034 + 220371014 220371054 41 GAGCACCGTGGGACGCTGGGCCCGCGTGGAGGGTACCCCCA GAGCACCGTGGGACGCTGGGCGCGCGTGGAGGGTACCCCCA < 41bp 0.580250622495409 0.841293247563735 0.07677752 0.37551966 prediction 0.522085250136652 Functional Gain - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220371034 chr2:220371035 synonymous SNV . 0 22 hm5C_associated_SNPs_106354 1 0 0 0 1 GMPPA chr2:220370976 3'AG 220370976 Downstream 60bp
chr19 35739867 35739867 1 + C G HNSC 35739866 + 35739846 35739886 41 CCTCCTGGCCTTGGTGCGCGCCGCGCCCCCTAAGGTACTTT CCTCCTGGCCTTGGTGCGCGCGGCGCCCCCTAAGGTACTTT < 41bp 0.449683399377148 0.761015959332403 0.06155166 0.5695497 prediction 0.522031918664806 Functional Gain - LSR ENSG00000105699 CDS Human protein_coding chr19:35739866 chr19:35739867 nonsynonymous SNV 0.914 1 22 hm5C_associated_SNPs_106357 0 0 0 0 1 LSR chr19:35739933 5'GT 35739933 Upstream 67bp
chr8 31014958 31014958 1 + C G SARC 31014954 + 31014934 31014974 41 CTTATCCCAAGCGGTGAAAGCTGGCTGCCCCCTTGATTTGG CTTATCCCAAGCGGTGAAAGCTGGGTGCCCCCTTGATTTGG < 41bp 0.535079529286789 0.796075771098277 0.352589 0.86343086 prediction 0.521992483622975 Functional Gain - WRN ENSG00000165392 CDS Human protein_coding chr8:31014954 chr8:31014958 synonymous SNV . 0 25 hm5C_associated_SNPs_106361 0 0 1 0 2 WRN chr8:31014884 3'AG 31014884 Downstream 75bp
chr8 31014958 31014958 1 + C G SARC 31014954 + 31014934 31014974 41 CTTATCCCAAGCGGTGAAAGCTGGCTGCCCCCTTGATTTGG CTTATCCCAAGCGGTGAAAGCTGGGTGCCCCCTTGATTTGG < 41bp 0.535079529286789 0.796075771098277 0.352589 0.86343086 prediction 0.521992483622975 Functional Gain - WRN ENSG00000165392 CDS Human protein_coding chr8:31014954 chr8:31014958 synonymous SNV . 0 25 hm5C_associated_SNPs_106361 0 0 1 0 2 WRN chr8:31015046 5'GT 31015046 Upstream 89bp
chr2 36669816 36669816 1 + C G rs140450317 36669815 + 36669795 36669835 41 TGTTCAGCAGACCGCGTGTCCCCCGGACAGCTATGAAACTC TGTTCAGCAGACCGCGTGTCCGCCGGACAGCTATGAAACTC < 41bp 0.465691371565333 0.760987149334411 0.15250865 0.2523335 prediction 0.521974298668822 Functional Gain - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36669815 chr2:36669816 synonymous SNV . 0 22 hm5C_associated_SNPs_106362 0 0 1 0 2 CRIM1 chr2:36669758 3'AG 36669758 Downstream 59bp
chr2 36669816 36669816 1 + C G rs140450317 36669815 + 36669795 36669835 41 TGTTCAGCAGACCGCGTGTCCCCCGGACAGCTATGAAACTC TGTTCAGCAGACCGCGTGTCCGCCGGACAGCTATGAAACTC < 41bp 0.465691371565333 0.760987149334411 0.15250865 0.2523335 prediction 0.521974298668822 Functional Gain - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36669815 chr2:36669816 synonymous SNV . 0 22 hm5C_associated_SNPs_106362 0 0 1 0 2 CRIM1 chr2:36669878 5'GT 36669878 Upstream 63bp
chr20 61939936 61939936 1 + C A LUSC 61939932 + 61939912 61939952 41 TGCTGGGGCAGAACCTGCAGCCGGCGGCTGGCCTCCGTCCA TGCTGGGGCAGAACCTGCAGCCGGAGGCTGGCCTCCGTCCA < 41bp 0.374723608235651 0.760951744940676 0.88650864 0.89255965 prediction 0.521903489881351 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61939932 chr20:61939936 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_106370 0 0 0 0 1 COL20A1 chr20:61939894 3'AG 61939894 Downstream 43bp
chr12 58016595 58016595 1 + C A UCEC 58016591 + 58016571 58016611 41 TTTCCCCAACCCCTCCTCCCCAACCTGGCTGAGCTGCCCAG TTTCCCCAACCCCTCCTCCCCAACATGGCTGAGCTGCCCAG < 41bp 0.335794544379871 0.760899314503206 0.23029855 0.17029464 prediction 0.521798629006411 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58016591 chr12:58016595 nonsynonymous SNV 0.924 3 25 hm5C_associated_SNPs_106372 0 0 0 0 1 SLC26A10 chr12:58016570 3'AG 58016570 Downstream 26bp
chrX 152772005 152772005 1 + T G SKCM 152772002 + 152771982 152772022 41 CCTAGAGATGGGCGGGAACCCACTGGAGAACAGTGGCTTTG CCTAGAGATGGGCGGGAACCCACGGGAGAACAGTGGCTTTG < 41bp 0.649119718842054 0.909998400166143 0.46825704 0.8764752 prediction 0.521757362648179 Functional Gain - BGN ENSG00000182492 CDS Human protein_coding chrX:152772002 chrX:152772005 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_106375 0 0 1 0 2 BGN chrX:152771987 3'AG 152771987 Downstream 19bp
chrX 152772005 152772005 1 + T G SKCM 152772002 + 152771982 152772022 41 CCTAGAGATGGGCGGGAACCCACTGGAGAACAGTGGCTTTG CCTAGAGATGGGCGGGAACCCACGGGAGAACAGTGGCTTTG < 41bp 0.649119718842054 0.909998400166143 0.46825704 0.8764752 prediction 0.521757362648179 Functional Gain - BGN ENSG00000182492 CDS Human protein_coding chrX:152772002 chrX:152772005 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_106375 0 0 1 0 2 BGN chrX:152772097 5'GT 152772097 Upstream 93bp
chr3 14175262 14175262 1 + T C rs2340917 14175260 + 14175240 14175280 41 GCCATGGCAGTGGAGTCATTCATGGCAACAGCCCCCTTTGT GCCATGGCAGTGGAGTCATTCACGGCAACAGCCCCCTTTGT < 41bp 0.517027799568428 0.777888648142029 0.54293823 0.39245608 prediction 0.521721697147203 Functional Gain - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14175260 chr3:14175262 nonsynonymous SNV 0.297 0 23 hm5C_associated_SNPs_106379 3 0 1 0 2 TMEM43 chr3:14175239 3'AG 14175239 Downstream 24bp
chr3 14175262 14175262 1 + T C rs2340917 14175260 + 14175240 14175280 41 GCCATGGCAGTGGAGTCATTCATGGCAACAGCCCCCTTTGT GCCATGGCAGTGGAGTCATTCACGGCAACAGCCCCCTTTGT < 41bp 0.517027799568428 0.777888648142029 0.54293823 0.39245608 prediction 0.521721697147203 Functional Gain - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14175260 chr3:14175262 nonsynonymous SNV 0.297 0 23 hm5C_associated_SNPs_106379 3 0 1 0 2 TMEM43 chr3:14175309 5'GT 14175309 Upstream 48bp
chr19 1924122 1924122 1 + C G BLCA 1924121 + 1924101 1924141 41 TTGCAGGTGCACAGGATCTACCGAGGGGCTGGCGGAAGCTT TTGCAGGTGCACAGGATCTACGGAGGGGCTGGCGGAAGCTT < 41bp 0.445853599631673 0.760856924208996 0.90901816 0.8406442 prediction 0.521713848417992 Functional Gain - SCAMP4 ENSG00000227500 CDS Human protein_coding chr19:1924121 chr19:1924122 nonsynonymous SNV 0.928 3 22 hm5C_associated_SNPs_106380 0 0 1 0 1 SCAMP4 chr19:1924107 3'AG 1924107 Downstream 16bp
chr3 44673999 44673999 1 + T G GBM 44673997 + 44673977 44674017 41 TTCGAGGAGGTGTCAGTATGCTTCACTTCAGAGGAATGGGC TTCGAGGAGGTGTCAGTATGCTGCACTTCAGAGGAATGGGC < 41bp 0.607127244148433 0.867983039301795 0.3019045 0.22324276 prediction 0.521711590306726 Functional Gain - ZNF197;ZNF660-ZNF197 ENSG00000186448 CDS Human protein_coding chr3:44673997 chr3:44673999 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106381 0 0 0 0 2 ZNF197;ZNF660-ZNF197 chr3:44673965 3'AG 44673965 Downstream 35bp
chr3 44673999 44673999 1 + T G GBM 44673997 + 44673977 44674017 41 TTCGAGGAGGTGTCAGTATGCTTCACTTCAGAGGAATGGGC TTCGAGGAGGTGTCAGTATGCTGCACTTCAGAGGAATGGGC < 41bp 0.607127244148433 0.867983039301795 0.3019045 0.22324276 prediction 0.521711590306726 Functional Gain - ZNF197;ZNF660-ZNF197 ENSG00000186448 CDS Human protein_coding chr3:44673997 chr3:44673999 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106381 0 0 0 0 2 ZNF197;ZNF660-ZNF197 chr3:44674091 5'GT 44674091 Upstream 93bp
chr1 110168300 110168300 1 + C A LUAD 110168296 + 110168276 110168316 41 CCCCCCAGGAGCTGTTCACCCGCTCACTGGCTGAGAGCGAG CCCCCCAGGAGCTGTTCACCCGCTAACTGGCTGAGAGCGAG < 41bp 0.350629148486147 0.760841739576231 0.129002 0.15312025 prediction 0.521683479152461 Functional Gain - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110168296 chr1:110168300 stopgain 0.978 0 25 hm5C_associated_SNPs_106382 0 0 1 0 1 AMPD2 chr1:110168284 3'AG 110168284 Downstream 17bp
chr5 119816972 119816972 1 + T G rs142617593 119816969 + 119816949 119816989 41 TCTCCTGCCTCAGCCTGCCTCAGTGCGCCACTACGCCTGGG TCTCCTGCCTCAGCCTGCCTCAGGGCGCCACTACGCCTGGG < 41bp 0.64499690010848 0.9058139928381 0.75278336 0.9383046 prediction 0.521634185459242 Functional Gain - PRR16 ENSG00000184838 CDS Human protein_coding chr5:119816969 chr5:119816972 nonsynonymous SNV 0.003 2 24 hm5C_associated_SNPs_106387 0 0 0 0 1 PRR16 chr5:119816988 5'GT 119816988 Upstream 17bp
chr11 82612842 82612842 1 + C G rs3763814 82612841 + 82612821 82612861 41 GTCACTGTGCGTCGCCTGGGCCCGTTCCTGGTCTTCTCCCC GTCACTGTGCGTCGCCTGGGCGCGTTCCTGGTCTTCTCCCC < 41bp 0.487475519929099 0.760813469516275 0.050621897 0.15050802 prediction 0.52162693903255 Functional Gain - DDIAS ENSG00000165490 UTR5 Human protein_coding chr11:82612841 chr11:82612842 . . 0 22 hm5C_associated_SNPs_106388 0 0 1 0 1 DDIAS chr11:82612864 5'GT 82612864 Upstream 23bp
chr15 85177517 85177517 1 + T A LUSC 85177513 + 85177493 85177533 41 AAGCCATGGCTGCTTGTTATCCGGTCAATGGAACGGGTTAT AAGCCATGGCTGCTTGTTATCCGGACAATGGAACGGGTTAT < 41bp 0.469198367542155 0.760810403076862 0.89398754 0.9092928 prediction 0.521620806153724 Functional Gain - SCAND2P ENSG00000176700;ENSG00000254779 ncRNA_exonic Human other chr15:85177513 chr15:85177517 . . 0 25 hm5C_associated_SNPs_106389 0 0 0 0 1 SCAND2P chr15:85177612 5'GT 85177612 Upstream 96bp
chr20 2297783 2297783 1 + C T SKCM 2297782 + 2297762 2297802 41 ACTTACACCGGTGGCCGGGACCCAAGGAGCTGGAACGGCAG ACTTACACCGGTGGCCGGGACTCAAGGAGCTGGAACGGCAG < 41bp 0.501626865165271 0.762436239341873 0.52994895 0.63201815 prediction 0.521618748353204 Functional Gain - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2297782 chr20:2297783 nonsynonymous SNV 0.908 5 22 hm5C_associated_SNPs_106390 0 0 0 0 1 TGM3 chr20:2297714 3'AG 2297714 Downstream 70bp
chr11 63960739 63960739 1 + C G BRCA 63960735 + 63960715 63960755 41 GAGGATGGCTGCAAGACTGTCGACCTAAAGCCTGACTGGGG GAGGATGGCTGCAAGACTGTCGACGTAAAGCCTGACTGGGG < 41bp 0.474431300495655 0.76080925083267 0.2904424 0.4567626 prediction 0.52161850166534 Functional Gain - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63960735 chr11:63960739 nonsynonymous SNV 0.219 1 25 hm5C_associated_SNPs_106391 0 0 1 0 1 STIP1 chr11:63960759 5'GT 63960759 Upstream 21bp
chr1 77093180 77093180 1 + C A rs1184626 77093176 + 77093156 77093196 41 CTCAGCACAGGGTGGTTTACCTTCCTTCTGGCCATGGACGC CTCAGCACAGGGTGGTTTACCTTCATTCTGGCCATGGACGC < 41bp 0.390260874189203 0.760785476897597 0.05356279 0.20683184 prediction 0.521570953795195 Functional Gain - ST6GALNAC3 ENSG00000184005 CDS Human protein_coding chr1:77093176 chr1:77093180 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_106394 0 0 0 0 1 ST6GALNAC3 chr1:77093244 5'GT 77093244 Upstream 65bp
chr4 122725881 122725881 1 + T C UCEC 122725879 + 122725859 122725899 41 CCTTATGTCATTTCCGAAGACCTGATGTCTCTGTCCAAGGA CCTTATGTCATTTCCGAAGACCCGATGTCTCTGTCCAAGGA < 41bp 0.555513570931503 0.816296379629365 0.09862745 0.11739108 prediction 0.521565617395724 Functional Gain - EXOSC9 ENSG00000123737 CDS Human protein_coding chr4:122725879 chr4:122725881 synonymous SNV . 0 23 hm5C_associated_SNPs_106395 0 0 1 0 1 EXOSC9 chr4:122725914 5'GT 122725914 Upstream 34bp
chr1 1959083 1959083 1 + C A LUAD 1959079 + 1959059 1959099 41 CCCATGGACGAGCAGGAGTGCATGCTGGACCTGGAGAGCTG CCCATGGACGAGCAGGAGTGCATGATGGACCTGGAGAGCTG < 41bp 0.354622110456389 0.760770534970039 0.31864917 0.44407052 prediction 0.521541069940078 Functional Gain - GABRD ENSG00000187730 CDS Human protein_coding chr1:1959079 chr1:1959083 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_106397 0 0 0 0 2 GABRD chr1:1959016 3'AG 1959016 Downstream 68bp
chr1 1959083 1959083 1 + C A LUAD 1959079 + 1959059 1959099 41 CCCATGGACGAGCAGGAGTGCATGCTGGACCTGGAGAGCTG CCCATGGACGAGCAGGAGTGCATGATGGACCTGGAGAGCTG < 41bp 0.354622110456389 0.760770534970039 0.31864917 0.44407052 prediction 0.521541069940078 Functional Gain - GABRD ENSG00000187730 CDS Human protein_coding chr1:1959079 chr1:1959083 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_106397 0 0 0 0 2 GABRD chr1:1959098 5'GT 1959098 Upstream 16bp
chr9 130425614 130425614 1 + C A BLCA 130425613 + 130425593 130425633 41 GTGCCACCCTGAAGGAGTACCCGGCTGTGCGGTATCGGGGG GTGCCACCCTGAAGGAGTACCAGGCTGTGCGGTATCGGGGG < 41bp 0.503814032975771 0.764572479283143 0.07580766 0.07355735 prediction 0.521516892614744 Functional Gain - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130425613 chr9:130425614 nonsynonymous SNV 0.954 5 22 hm5C_associated_SNPs_106400 0 0 0 0 1 STXBP1 chr9:130425632 5'GT 130425632 Upstream 19bp
chr12 56532009 56532009 1 + C A rs35075600 56532005 + 56531985 56532025 41 GTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCGTCTCAC GTCCCATCTGGCCGCCTGCACTTGAGCCTGGAGCGTCTCAC < 41bp 0.342502443285442 0.760740652010985 0.28947395 0.37590447 prediction 0.521481304021969 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532005 chr12:56532009 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_106403 0 0 1 0 2 ESYT1 chr12:56531967 3'AG 56531967 Downstream 43bp
chr12 56532009 56532009 1 + C A rs35075600 56532005 + 56531985 56532025 41 GTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCGTCTCAC GTCCCATCTGGCCGCCTGCACTTGAGCCTGGAGCGTCTCAC < 41bp 0.342502443285442 0.760740652010985 0.28947395 0.37590447 prediction 0.521481304021969 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532005 chr12:56532009 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_106403 0 0 1 0 2 ESYT1 chr12:56532056 5'GT 56532056 Upstream 48bp
chr19 55086249 55086249 1 + T C rs45523736 55086247 + 55086227 55086267 41 CTGCCCAGCCCTGTGGTGACCTTAGGAGGGAACGTGACCCT CTGCCCAGCCCTGTGGTGACCTCAGGAGGGAACGTGACCCT < 41bp 0.504991335357256 0.765728975201084 0.80451524 0.6954725 prediction 0.521475279687656 Functional Gain - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55086247 chr19:55086249 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_106405 0 0 0 0 1 LILRA2 chr19:55086198 3'AG 55086198 Downstream 52bp
chr10 104816663 104816663 1 + C T SKCM 104816662 + 104816642 104816682 41 ATGAGAAGAACAAGAAAGCCCCCGAATACTACCTCTACCAG ATGAGAAGAACAAGAAAGCCCTCGAATACTACCTCTACCAG < 41bp 0.497408274793124 0.760730304224792 0.27179348 0.8464383 prediction 0.521460608449584 Functional Gain - CNNM2 ENSG00000148842 CDS Human protein_coding chr10:104816662 chr10:104816663 nonsynonymous SNV 0.917 2 22 hm5C_associated_SNPs_106406 0 0 0 0 1 CNNM2 chr10:104816721 5'GT 104816721 Upstream 59bp
chr16 27459874 27459874 1 + T C KIRP 27459872 + 27459852 27459892 41 CAGAAATGGGTGGGTGCACCCTTCACTGGCTCCAGCCTGGA CAGAAATGGGTGGGTGCACCCTCCACTGGCTCCAGCCTGGA < 41bp 0.544364426839911 0.805082615480888 0.13047907 0.9496332 prediction 0.521436377281955 Functional Gain - IL21R ENSG00000103522 CDS Human protein_coding chr16:27459872 chr16:27459874 nonsynonymous SNV 0.053 1 23 hm5C_associated_SNPs_106409 0 0 0 0 1 IL21R chr16:27459855 3'AG 27459855 Downstream 20bp
chr12 654081 654081 1 + C T SKCM 654080 + 654060 654100 41 CTGAGGAAGCTTGCTGTGTCCCCCAAATGGACCAACTATGG CTGAGGAAGCTTGCTGTGTCCTCCAAATGGACCAACTATGG < 41bp 0.49831573255145 0.760697079226745 0.0327453 0.9383458 prediction 0.521394158453491 Functional Gain - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:654080 chr12:654081 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_106411 0 0 1 0 2 B4GALNT3 chr12:654048 3'AG 654048 Downstream 34bp
chr12 654081 654081 1 + C T SKCM 654080 + 654060 654100 41 CTGAGGAAGCTTGCTGTGTCCCCCAAATGGACCAACTATGG CTGAGGAAGCTTGCTGTGTCCTCCAAATGGACCAACTATGG < 41bp 0.49831573255145 0.760697079226745 0.0327453 0.9383458 prediction 0.521394158453491 Functional Gain - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:654080 chr12:654081 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_106411 0 0 1 0 2 B4GALNT3 chr12:654138 5'GT 654138 Upstream 58bp
chr18 44013210 44013210 1 + T G rs563079733 44013208 + 44013188 44013228 41 ACCTCCTGCCGCCACTTCCACCTGGGCCCCCCGCAGCCGCA ACCTCCTGCCGCCACTTCCACCGGGGCCCCCCGCAGCCGCA < 41bp 0.448570369154139 0.760697007223352 0.27219152 0.91051424 prediction 0.521394014446704 Functional Gain - RNF165 ENSG00000141622 CDS Human protein_coding chr18:44013208 chr18:44013210 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_106412 0 0 0 0 1 RNF165 chr18:44013153 3'AG 44013153 Downstream 58bp
chrX 591835 591835 1 + T A LUAD 591831 + 591811 591851 41 CGGAGGGCGGCGGCCACTGCCCGGTGCATTTGTTCAAGGAC CGGAGGGCGGCGGCCACTGCCCGGAGCATTTGTTCAAGGAC < 41bp 0.447716103707004 0.760696624598252 0.4070347 0.88758063 prediction 0.521393249196504 Functional Gain - SHOX ENSG00000185960 CDS Human protein_coding chrX:591831 chrX:591835 nonsynonymous SNV 0.813 1 25 hm5C_associated_SNPs_106413 0 0 0 0 1 SHOX chrX:591909 5'GT 591909 Upstream 75bp
chr16 53878098 53878098 1 + T A LIHC 53878094 + 53878074 53878114 41 AGAGGAAAGTGAGGATGACTCTCATCTCGAAGGCAGGGATC AGAGGAAAGTGAGGATGACTCTCAACTCGAAGGCAGGGATC < 41bp 0.441156621521089 0.760653218726062 0.010984808 0.035553634 prediction 0.521306437452123 Functional Gain - FTO ENSG00000140718 CDS Human protein_coding chr16:53878094 chr16:53878098 nonsynonymous SNV 0.101 0 25 hm5C_associated_SNPs_106417 1 0 1 0 1 FTO chr16:53878067 3'AG 53878067 Downstream 32bp
chr1 1458897 1458897 1 + C A UCEC 1458893 + 1458873 1458913 41 CCCCTTCCCCTCCGGCAGGTCAGCCGGCGGCTCCTCAGTCG CCCCTTCCCCTCCGGCAGGTCAGCAGGCGGCTCCTCAGTCG < 41bp 0.656048079730066 0.916688983893224 0.6921683 0.75150836 prediction 0.521281808326317 Functional Gain - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1458893 chr1:1458897 synonymous SNV . 0 25 hm5C_associated_SNPs_106419 0 0 1 0 1 ATAD3A chr1:1458891 3'AG 1458891 Downstream 7bp
chr2 175265765 175265765 1 + T G COAD 175265763 + 175265743 175265783 41 GCTGAAAAAGCCCTCAATGTCATTGTTGACTTACTAGAAAA GCTGAAAAAGCCCTCAATGTCAGTGTTGACTTACTAGAAAA < 41bp 0.436029733145705 0.760640625148643 0.07215834 0.27238938 prediction 0.521281250297285 Functional Gain - SCRN3 ENSG00000144306 CDS Human protein_coding chr2:175265763 chr2:175265765 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_106420 0 0 1 0 1 SCRN3 chr2:175265718 3'AG 175265718 Downstream 48bp
chr10 99512859 99512859 1 + T C COAD 99512857 + 99512837 99512877 41 GCCCTGCAGGACAACGGGTTCCTGAGCAAGAATGAGGTGCT GCCCTGCAGGACAACGGGTTCCCGAGCAAGAATGAGGTGCT < 41bp 0.497892537473271 0.760624060527295 0.24161655 0.3255493 prediction 0.521248121054589 Functional Gain - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99512857 chr10:99512859 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_106421 0 0 1 1 2 ZFYVE27 chr10:99512795 3'AG 99512795 Downstream 65bp
chr10 99512859 99512859 1 + T C COAD 99512857 + 99512837 99512877 41 GCCCTGCAGGACAACGGGTTCCTGAGCAAGAATGAGGTGCT GCCCTGCAGGACAACGGGTTCCCGAGCAAGAATGAGGTGCT < 41bp 0.497892537473271 0.760624060527295 0.24161655 0.3255493 prediction 0.521248121054589 Functional Gain - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99512857 chr10:99512859 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_106421 0 0 1 1 2 ZFYVE27 chr10:99512939 5'GT 99512939 Upstream 81bp
chr17 27381604 27381604 1 + T C UCEC 27381602 + 27381582 27381622 41 GTTACTGGCGAGAGATGGTTCCTGGGAGCTATGGTGTGTCC GTTACTGGCGAGAGATGGTTCCCGGGAGCTATGGTGTGTCC < 41bp 0.516511109395337 0.777120750134166 0.14351287 0.41599846 prediction 0.521219281477658 Functional Gain - PIPOX ENSG00000179761 CDS Human protein_coding chr17:27381602 chr17:27381604 synonymous SNV . 0 23 hm5C_associated_SNPs_106424 0 0 0 0 1 PIPOX chr17:27381563 3'AG 27381563 Downstream 42bp
chr16 3109081 3109081 1 - G T COAD 3109085 - 3109065 3109105 41 CCCCCATCAGCGGGAGGCTACACCCCCCACCAGCAGGGGCA CCCCCATCAGCGGGAGGCTACACCACCCACCAGCAGGGGCA < 41bp 0.376666164636227 0.760597467385128 0.29973215 0.4031601 prediction 0.521194934770256 Functional Gain - MMP25 ENSG00000008516 CDS Human protein_coding chr16:3109085 chr16:3109081 synonymous SNV . 0 25 hm5C_associated_SNPs_106425 0 0 0 0 1 MMP25 chr16:3108997 5'GT 3108997 Upstream 85bp
chr11 65633313 65633313 1 + C T SKCM 65633312 + 65633292 65633332 41 GCCTATGATGCCTGTGCCACCCCCAAGGAACAAGAGACACT GCCTATGATGCCTGTGCCACCTCCAAGGAACAAGAGACACT < 41bp 0.512176756588906 0.772772199112642 0.030586362 0.95078516 prediction 0.521190885047473 Functional Gain - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65633312 chr11:65633313 nonsynonymous SNV 0.994 0 22 hm5C_associated_SNPs_106426 0 0 1 0 2 MUS81 chr11:65633282 3'AG 65633282 Downstream 32bp
chr11 65633313 65633313 1 + C T SKCM 65633312 + 65633292 65633332 41 GCCTATGATGCCTGTGCCACCCCCAAGGAACAAGAGACACT GCCTATGATGCCTGTGCCACCTCCAAGGAACAAGAGACACT < 41bp 0.512176756588906 0.772772199112642 0.030586362 0.95078516 prediction 0.521190885047473 Functional Gain - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65633312 chr11:65633313 nonsynonymous SNV 0.994 0 22 hm5C_associated_SNPs_106426 0 0 1 0 2 MUS81 chr11:65633365 5'GT 65633365 Upstream 53bp
chr20 9498830 9498830 1 + C T SKCM 9498829 + 9498809 9498849 41 ACCATGATCCTGTCTGCGGTCCACATCCAACCTTTTGACAT ACCATGATCCTGTCTGCGGTCTACATCCAACCTTTTGACAT < 41bp 0.507638124373876 0.768231976236243 0.022997916 0.50061953 prediction 0.521187703724734 Functional Gain - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9498829 chr20:9498830 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_106427 0 0 0 0 1 LAMP5 chr20:9498875 5'GT 9498875 Upstream 46bp
chr16 227039 227039 1 + C A rs1060339 227035 + 227015 227055 41 GAAGGTGGCCGACGCGCTGACCAACGCCGTGGCGCACGTGG GAAGGTGGCCGACGCGCTGACCAAAGCCGTGGCGCACGTGG < 41bp 0.369792092916672 0.760533092356042 0.052032262 0.07618195 prediction 0.521066184712085 Functional Gain - HBA1 ENSG00000206172 CDS Human protein_coding chr16:227035 chr16:227039 nonsynonymous SNV 0.003 1 25 hm5C_associated_SNPs_106433 1 0 0 0 1 HBA1 chr16:227132 5'GT 227132 Upstream 94bp
chr4 39776523 39776523 1 + T A COAD 39776519 + 39776499 39776539 41 ACTATTGGCAGCTGCAGAGCCAGATGATCCACAGGATGCTG ACTATTGGCAGCTGCAGAGCCAGAAGATCCACAGGATGCTG < 41bp 0.580978369926935 0.841506072052415 0.9025941 0.6854531 prediction 0.521055404250959 Functional Gain - UBE2K ENSG00000078140 CDS Human protein_coding chr4:39776519 chr4:39776523 stoploss 0.979 2 25 hm5C_associated_SNPs_106434 0 0 1 0 2 UBE2K chr4:39776454 3'AG 39776454 Downstream 70bp
chr4 39776523 39776523 1 + T A COAD 39776519 + 39776499 39776539 41 ACTATTGGCAGCTGCAGAGCCAGATGATCCACAGGATGCTG ACTATTGGCAGCTGCAGAGCCAGAAGATCCACAGGATGCTG < 41bp 0.580978369926935 0.841506072052415 0.9025941 0.6854531 prediction 0.521055404250959 Functional Gain - UBE2K ENSG00000078140 CDS Human protein_coding chr4:39776519 chr4:39776523 stoploss 0.979 2 25 hm5C_associated_SNPs_106434 0 0 1 0 2 UBE2K chr4:39776553 5'GT 39776553 Upstream 31bp
chr2 73476181 73476181 1 + T C LUSC 73476179 + 73476159 73476199 41 ATGACAAGTTAGAGAAGATCCATCATTCTGGAGCCAAAGTT ATGACAAGTTAGAGAAGATCCACCATTCTGGAGCCAAAGTT < 41bp 0.566314769807159 0.826842451684544 0.050397217 0.040304333 prediction 0.521055363754772 Functional Gain - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73476179 chr2:73476181 synonymous SNV . 0 23 hm5C_associated_SNPs_106435 0 0 1 0 1 CCT7 chr2:73476119 3'AG 73476119 Downstream 63bp
chr12 85439884 85439884 1 + T C UCEC 85439882 + 85439862 85439902 41 TTGTTCCTGAGCCTAGTCCTCATGACTTGCCTATGGATGAA TTGTTCCTGAGCCTAGTCCTCACGACTTGCCTATGGATGAA < 41bp 0.515147945327543 0.775665141074948 0.24944842 0.07821417 prediction 0.521034391494809 Functional Gain - LRRIQ1 ENSG00000133640 CDS Human protein_coding chr12:85439882 chr12:85439884 synonymous SNV . 0 23 hm5C_associated_SNPs_106437 0 0 0 0 1 LRRIQ1 chr12:85439915 5'GT 85439915 Upstream 32bp
chr2 75081509 75081509 1 + T C COAD 75081507 + 75081487 75081527 41 GCAAGGAGATGGAGAAAGGGCTTGGAGCCACCACTCACCCT GCAAGGAGATGGAGAAAGGGCTCGGAGCCACCACTCACCCT < 41bp 0.521129402877486 0.78164327923846 0.025935352 0.06791592 prediction 0.521027752721949 Functional Gain - HK2 ENSG00000159399 CDS Human protein_coding chr2:75081507 chr2:75081509 synonymous SNV . 0 23 hm5C_associated_SNPs_106439 0 0 1 0 2 HK2 chr2:75081420 3'AG 75081420 Downstream 90bp
chr2 75081509 75081509 1 + T C COAD 75081507 + 75081487 75081527 41 GCAAGGAGATGGAGAAAGGGCTTGGAGCCACCACTCACCCT GCAAGGAGATGGAGAAAGGGCTCGGAGCCACCACTCACCCT < 41bp 0.521129402877486 0.78164327923846 0.025935352 0.06791592 prediction 0.521027752721949 Functional Gain - HK2 ENSG00000159399 CDS Human protein_coding chr2:75081507 chr2:75081509 synonymous SNV . 0 23 hm5C_associated_SNPs_106439 0 0 1 0 2 HK2 chr2:75081582 5'GT 75081582 Upstream 74bp
chr9 123911018 123911018 1 + T A LAML 123911014 + 123910994 123911034 41 CCTTAAGTACTCAGCCTCAACTCCTGTTAGAAAACCACGCC CCTTAAGTACTCAGCCTCAACTCCAGTTAGAAAACCACGCC < 41bp 0.609968183666801 0.870468130232707 0.17632797 0.8939522 prediction 0.520999893131811 Functional Gain - CNTRL ENSG00000119397 CDS Human protein_coding chr9:123911014 chr9:123911018 synonymous SNV . 0 25 hm5C_associated_SNPs_106440 0 0 1 0 1 CNTRL chr9:123910950 3'AG 123910950 Downstream 69bp
chrX 110968219 110968219 1 + C A UCEC 110968215 + 110968195 110968235 41 TACCCAAGTGATGTCTGTTCCTGCCTGGAATGCTATGCCCA TACCCAAGTGATGTCTGTTCCTGCATGGAATGCTATGCCCA < 41bp 0.356453993312435 0.760487806608119 0.12009823 0.64557964 prediction 0.520975613216239 Functional Gain - ALG13 ENSG00000101901 CDS Human protein_coding chrX:110968215 chrX:110968219 synonymous SNV . 0 25 hm5C_associated_SNPs_106443 0 0 1 0 2 ALG13 chrX:110968162 3'AG 110968162 Downstream 58bp
chrX 110968219 110968219 1 + C A UCEC 110968215 + 110968195 110968235 41 TACCCAAGTGATGTCTGTTCCTGCCTGGAATGCTATGCCCA TACCCAAGTGATGTCTGTTCCTGCATGGAATGCTATGCCCA < 41bp 0.356453993312435 0.760487806608119 0.12009823 0.64557964 prediction 0.520975613216239 Functional Gain - ALG13 ENSG00000101901 CDS Human protein_coding chrX:110968215 chrX:110968219 synonymous SNV . 0 25 hm5C_associated_SNPs_106443 0 0 1 0 2 ALG13 chrX:110968289 5'GT 110968289 Upstream 71bp
chr12 52309927 52309927 1 + C T CESC 52309926 + 52309906 52309946 41 GAGGTGCTGGACGAGCAGATCCGCACGGACTGCTTTGAGTC GAGGTGCTGGACGAGCAGATCTGCACGGACTGCTTTGAGTC < 41bp 0.51228941907736 0.772776857283611 0.34914106 0.53413737 prediction 0.520974876412503 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309926 chr12:52309927 nonsynonymous SNV 0.256 5 22 hm5C_associated_SNPs_106444 0 0 0 0 1 ACVRL1 chr12:52310017 5'GT 52310017 Upstream 91bp
chr8 74209456 74209456 1 + C T SKCM 74209455 + 74209435 74209475 41 ATGGTGAGGAAGAAATTCTGCCCCACTGTAACTTGCAGGTT ATGGTGAGGAAGAAATTCTGCTCCACTGTAACTTGCAGGTT < 41bp 0.504658885688637 0.765142330107205 0.1499139 0.18547168 prediction 0.520966888837136 Functional Gain - RDH10 ENSG00000121039 CDS Human protein_coding chr8:74209455 chr8:74209456 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_106445 0 0 1 0 1 RDH10 chr8:74209429 3'AG 74209429 Downstream 28bp
chr6 44364085 44364085 1 + T G rs549324401 44364083 + 44364063 44364103 41 TTTTAATTTTTGCAGATGAACTTGAGATGCTTTCTGAAGCC TTTTAATTTTTGCAGATGAACTGGAGATGCTTTCTGAAGCC < 41bp 0.593946985092705 0.854428305375401 0.29432845 0.5898278 prediction 0.520962640565392 Functional Gain - CDC5L ENSG00000096401 CDS Human protein_coding chr6:44364083 chr6:44364085 synonymous SNV . 0 23 hm5C_associated_SNPs_106446 0 0 1 0 2 CDC5L chr6:44364078 3'AG 44364078 Downstream 8bp
chr6 44364085 44364085 1 + T G rs549324401 44364083 + 44364063 44364103 41 TTTTAATTTTTGCAGATGAACTTGAGATGCTTTCTGAAGCC TTTTAATTTTTGCAGATGAACTGGAGATGCTTTCTGAAGCC < 41bp 0.593946985092705 0.854428305375401 0.29432845 0.5898278 prediction 0.520962640565392 Functional Gain - CDC5L ENSG00000096401 CDS Human protein_coding chr6:44364083 chr6:44364085 synonymous SNV . 0 23 hm5C_associated_SNPs_106446 0 0 1 0 2 CDC5L chr6:44364177 5'GT 44364177 Upstream 93bp
chr17 48761062 48761062 1 + C G rs41280128 48761061 + 48761041 48761081 41 ATTATTCTGTGCGCTACCGGCCGGGCCTAGACCTGGTGCTG ATTATTCTGTGCGCTACCGGCGGGGCCTAGACCTGGTGCTG < 41bp 0.443260713534954 0.760467468688252 0.8770642 0.9019468 prediction 0.520934937376504 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48761061 chr17:48761062 nonsynonymous SNV 0.792 2 22 hm5C_associated_SNPs_106448 0 0 1 0 2 ABCC3 chr17:48760971 3'AG 48760971 Downstream 92bp
chr17 48761062 48761062 1 + C G rs41280128 48761061 + 48761041 48761081 41 ATTATTCTGTGCGCTACCGGCCGGGCCTAGACCTGGTGCTG ATTATTCTGTGCGCTACCGGCGGGGCCTAGACCTGGTGCTG < 41bp 0.443260713534954 0.760467468688252 0.8770642 0.9019468 prediction 0.520934937376504 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48761061 chr17:48761062 nonsynonymous SNV 0.792 2 22 hm5C_associated_SNPs_106448 0 0 1 0 2 ABCC3 chr17:48761117 5'GT 48761117 Upstream 56bp
chr14 104472773 104472773 1 + T C UCEC 104472771 + 104472751 104472791 41 AGAGAGAAGATGAAAACCCCCATGATGGTGAATTGACCTTC AGAGAGAAGATGAAAACCCCCACGATGGTGAATTGACCTTC < 41bp 0.558005122118023 0.818458588609811 0.4217553 0.27970707 prediction 0.520906932983575 Functional Gain - TDRD9 ENSG00000156414 CDS Human protein_coding chr14:104472771 chr14:104472773 synonymous SNV . 0 23 hm5C_associated_SNPs_106452 0 0 0 0 1 TDRD9 chr14:104472726 3'AG 104472726 Downstream 48bp
chr17 19281359 19281359 1 + C A rs75007942 19281355 + 19281335 19281375 41 ATTCCCAGAGCTCCTGGGACCAAGCAAATGGCGGACACAAT ATTCCCAGAGCTCCTGGGACCAAGAAAATGGCGGACACAAT < 41bp 0.502071635916612 0.762492270321027 0.27796212 0.32589602 prediction 0.52084126880883 Functional Gain - B9D1;MAPK7 ENSG00000108641;ENSG00000166484 UTR5 Human other chr17:19281355 chr17:19281359 . . 0 25 hm5C_associated_SNPs_106456 0 0 0 0 1 B9D1;MAPK7 chr17:19281414 5'GT 19281414 Upstream 56bp
chr15 50526114 50526114 1 + T C rs34984126 50526112 + 50526092 50526132 41 CCATCAAAATGAAAGAAAACCATGAATTTGATGGAAAGAAA CCATCAAAATGAAAGAAAACCACGAATTTGATGGAAAGAAA < 41bp 0.485131842985556 0.760419267419057 0.094872475 0.04834208 prediction 0.520838534838113 Functional Gain - SLC27A2 ENSG00000140284 CDS Human protein_coding chr15:50526112 chr15:50526114 synonymous SNV . 0 23 hm5C_associated_SNPs_106458 0 0 1 0 2 SLC27A2 chr15:50526065 3'AG 50526065 Downstream 50bp
chr15 50526114 50526114 1 + T C rs34984126 50526112 + 50526092 50526132 41 CCATCAAAATGAAAGAAAACCATGAATTTGATGGAAAGAAA CCATCAAAATGAAAGAAAACCACGAATTTGATGGAAAGAAA < 41bp 0.485131842985556 0.760419267419057 0.094872475 0.04834208 prediction 0.520838534838113 Functional Gain - SLC27A2 ENSG00000140284 CDS Human protein_coding chr15:50526112 chr15:50526114 synonymous SNV . 0 23 hm5C_associated_SNPs_106458 0 0 1 0 2 SLC27A2 chr15:50526195 5'GT 50526195 Upstream 82bp
chr4 84511401 84511401 1 + C T SKCM 84511400 + 84511380 84511420 41 TGTGTTGCCAACCATACTTCCCCCATTGATGTTTTAATCTT TGTGTTGCCAACCATACTTCCTCCATTGATGTTTTAATCTT < 41bp 0.522907023157032 0.783304805371896 0.010694504 0.9568778 prediction 0.520795564429728 Functional Gain - GPAT3 ENSG00000138678 CDS Human protein_coding chr4:84511400 chr4:84511401 nonsynonymous SNV 0.293 4 22 hm5C_associated_SNPs_106460 0 0 0 0 2 GPAT3 chr4:84511352 3'AG 84511352 Downstream 50bp
chr4 84511401 84511401 1 + C T SKCM 84511400 + 84511380 84511420 41 TGTGTTGCCAACCATACTTCCCCCATTGATGTTTTAATCTT TGTGTTGCCAACCATACTTCCTCCATTGATGTTTTAATCTT < 41bp 0.522907023157032 0.783304805371896 0.010694504 0.9568778 prediction 0.520795564429728 Functional Gain - GPAT3 ENSG00000138678 CDS Human protein_coding chr4:84511400 chr4:84511401 nonsynonymous SNV 0.293 4 22 hm5C_associated_SNPs_106460 0 0 0 0 2 GPAT3 chr4:84511445 5'GT 84511445 Upstream 45bp
chr7 101188710 101188710 1 + C G rs147296294 101188706 + 101188686 101188726 41 ACCCGGCCCAGCAGGCAACCCAGGCCCCTCACCAAACAGCC ACCCGGCCCAGCAGGCAACCCAGGGCCCTCACCAAACAGCC < 41bp 0.561223584704878 0.821608695108534 0.5707044 0.899104 prediction 0.520770220807312 Functional Gain - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188706 chr7:101188710 synonymous SNV . 0 25 hm5C_associated_SNPs_106462 0 0 0 0 2 COL26A1 chr7:101188619 3'AG 101188619 Downstream 92bp
chr7 101188710 101188710 1 + C G rs147296294 101188706 + 101188686 101188726 41 ACCCGGCCCAGCAGGCAACCCAGGCCCCTCACCAAACAGCC ACCCGGCCCAGCAGGCAACCCAGGGCCCTCACCAAACAGCC < 41bp 0.561223584704878 0.821608695108534 0.5707044 0.899104 prediction 0.520770220807312 Functional Gain - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188706 chr7:101188710 synonymous SNV . 0 25 hm5C_associated_SNPs_106462 0 0 0 0 2 COL26A1 chr7:101188771 5'GT 101188771 Upstream 62bp
chr8 38854608 38854608 1 + C A CESC 38854604 + 38854584 38854624 41 TGGGGTCTGGCGCGCGCTTTCCCTCGGGGACCCTTCGTGTC TGGGGTCTGGCGCGCGCTTTCCCTAGGGGACCCTTCGTGTC < 41bp 0.379392838026359 0.760372894939575 0.029551923 0.0809938 prediction 0.52074578987915 Functional Gain - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38854604 chr8:38854608 stopgain 0.000 0 25 hm5C_associated_SNPs_106464 0 0 1 0 1 ADAM9 chr8:38854679 5'GT 38854679 Upstream 72bp
chr12 69995145 69995145 1 + C G OV 69995141 + 69995121 69995161 41 GTCGATCTTTGGACCAGTTTCTAGCAAAGTTGTGTTTGAAA GTCGATCTTTGGACCAGTTTCTAGGAAAGTTGTGTTTGAAA < 41bp 0.532854548375261 0.793226237731448 0.20682937 0.76770365 prediction 0.520743378712374 Functional Gain - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69995141 chr12:69995145 nonsynonymous SNV 0.761 1 25 hm5C_associated_SNPs_106465 0 0 1 0 1 CCT2 chr12:69995075 3'AG 69995075 Downstream 71bp
chr17 7758519 7758519 1 + C A PAAD 7758515 + 7758495 7758535 41 AATCTGCTGGTGGCTGCCTTCAATCTTCTCCTGCTGGTGCT AATCTGCTGGTGGCTGCCTTCAATATTCTCCTGCTGGTGCT < 41bp 0.363688083378495 0.760358726279008 0.16885433 0.097649425 prediction 0.520717452558016 Functional Gain - TMEM88 ENSG00000167874 CDS Human protein_coding chr17:7758515 chr17:7758519 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_106467 0 0 0 0 1 TMEM88 chr17:7758602 5'GT 7758602 Upstream 84bp
chr16 50664200 50664200 1 + C T SKCM 50664199 + 50664179 50664219 41 GGGTAAAGCTCACCGTGGCCCCCGATGGCAGCCAGAGCAAG GGGTAAAGCTCACCGTGGCCCTCGATGGCAGCCAGAGCAAG < 41bp 0.494675433127998 0.760353735244924 0.027597517 0.33928955 prediction 0.520707470489848 Functional Gain - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50664199 chr16:50664200 nonsynonymous SNV 0.084 4 22 hm5C_associated_SNPs_106468 0 0 1 0 1 NKD1 chr16:50664244 5'GT 50664244 Upstream 45bp
chrX 69669255 69669255 1 + C T SKCM 69669254 + 69669234 69669274 41 TCGCAGGTGGCATCGACAATCCCCATGTCCCTGATGACCCT TCGCAGGTGGCATCGACAATCTCCATGTCCCTGATGACCCT < 41bp 0.531772337937339 0.792105328560957 0.16219983 0.9612843 prediction 0.520665981247236 Functional Gain - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69669254 chrX:69669255 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_106470 0 0 0 0 2 DLG3 chrX:69669209 3'AG 69669209 Downstream 47bp
chrX 69669255 69669255 1 + C T SKCM 69669254 + 69669234 69669274 41 TCGCAGGTGGCATCGACAATCCCCATGTCCCTGATGACCCT TCGCAGGTGGCATCGACAATCTCCATGTCCCTGATGACCCT < 41bp 0.531772337937339 0.792105328560957 0.16219983 0.9612843 prediction 0.520665981247236 Functional Gain - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69669254 chrX:69669255 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_106470 0 0 0 0 2 DLG3 chrX:69669333 5'GT 69669333 Upstream 79bp
chr17 7916488 7916488 1 + C A rs140628227 7916484 + 7916464 7916504 41 GGAGCGCCGGGGAACGCTGGCCGGCGACGTCTTTAGCTTGG GGAGCGCCGGGGAACGCTGGCCGGAGACGTCTTTAGCTTGG < 41bp 0.361240088368811 0.760262990959056 0.88262266 0.90031266 prediction 0.520525981918112 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7916484 chr17:7916488 synonymous SNV . 0 25 hm5C_associated_SNPs_106478 0 0 0 0 1 GUCY2D chr17:7916421 3'AG 7916421 Downstream 68bp
chr22 41621037 41621037 1 + C A UCEC 41621033 + 41621013 41621053 41 ATGAAGCTGGAGGCCATTGACCCCCTGAATCTGGGCAACAT ATGAAGCTGGAGGCCATTGACCCCATGAATCTGGGCAACAT < 41bp 0.335644444996379 0.760251596225112 0.19624263 0.17124707 prediction 0.520503192450224 Functional Gain - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41621033 chr22:41621037 nonsynonymous SNV 0.869 4 25 hm5C_associated_SNPs_106479 0 0 1 0 2 L3MBTL2 chr22:41620971 3'AG 41620971 Downstream 67bp
chr22 41621037 41621037 1 + C A UCEC 41621033 + 41621013 41621053 41 ATGAAGCTGGAGGCCATTGACCCCCTGAATCTGGGCAACAT ATGAAGCTGGAGGCCATTGACCCCATGAATCTGGGCAACAT < 41bp 0.335644444996379 0.760251596225112 0.19624263 0.17124707 prediction 0.520503192450224 Functional Gain - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41621033 chr22:41621037 nonsynonymous SNV 0.869 4 25 hm5C_associated_SNPs_106479 0 0 1 0 2 L3MBTL2 chr22:41621075 5'GT 41621075 Upstream 39bp
chr16 20796331 20796331 1 + T G UCEC 20796328 + 20796308 20796348 41 ATAAGTTTAAAAGCTTAAAGCACTGTGTGAGTGCTGGGGAA ATAAGTTTAAAAGCTTAAAGCACGGTGTGAGTGCTGGGGAA < 41bp 0.371087223217708 0.760230038657712 0.14391845 0.3496218 prediction 0.520460077315425 Functional Gain - ACSM3 ENSG00000005187 CDS Human protein_coding chr16:20796328 chr16:20796331 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_106480 0 0 1 0 2 ACSM3 chr16:20796306 3'AG 20796306 Downstream 26bp
chr16 20796331 20796331 1 + T G UCEC 20796328 + 20796308 20796348 41 ATAAGTTTAAAAGCTTAAAGCACTGTGTGAGTGCTGGGGAA ATAAGTTTAAAAGCTTAAAGCACGGTGTGAGTGCTGGGGAA < 41bp 0.371087223217708 0.760230038657712 0.14391845 0.3496218 prediction 0.520460077315425 Functional Gain - ACSM3 ENSG00000005187 CDS Human protein_coding chr16:20796328 chr16:20796331 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_106480 0 0 1 0 2 ACSM3 chr16:20796429 5'GT 20796429 Upstream 99bp
chr19 48259787 48259787 1 + C G rs11538664 48259786 + 48259766 48259806 41 CTCCCTCTCTGTCCTGTAGCCCGAGGGCAACATCCTTCGAG CTCCCTCTCTGTCCTGTAGCCGGAGGGCAACATCCTTCGAG < 41bp 0.436235880780977 0.76022324053414 0.35573626 0.92182195 prediction 0.520446481068281 Functional Gain - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259786 chr19:48259787 synonymous SNV . 0 22 hm5C_associated_SNPs_106481 0 0 1 0 2 NOP53 chr19:48259785 3'AG 48259785 Downstream 3bp
chr19 48259787 48259787 1 + C G rs11538664 48259786 + 48259766 48259806 41 CTCCCTCTCTGTCCTGTAGCCCGAGGGCAACATCCTTCGAG CTCCCTCTCTGTCCTGTAGCCGGAGGGCAACATCCTTCGAG < 41bp 0.436235880780977 0.76022324053414 0.35573626 0.92182195 prediction 0.520446481068281 Functional Gain - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259786 chr19:48259787 synonymous SNV . 0 22 hm5C_associated_SNPs_106481 0 0 1 0 2 NOP53 chr19:48259861 5'GT 48259861 Upstream 75bp
chr12 52700002 52700002 1 + C G BRCA 52700001 + 52699981 52700021 41 GTACCAGGAGGTGATGAACTCCAAGCTGGGCCTGGACATCG GTACCAGGAGGTGATGAACTCGAAGCTGGGCCTGGACATCG < 41bp 0.442273578040041 0.760183351735291 0.35445178 0.9258223 prediction 0.520366703470582 Functional Gain - KRT86 ENSG00000170442 CDS Human protein_coding chr12:52700001 chr12:52700002 synonymous SNV . 0 22 hm5C_associated_SNPs_106484 0 0 0 0 1 KRT86 chr12:52700064 5'GT 52700064 Upstream 63bp
chr6 127471646 127471646 1 + T A STAD 127471642 + 127471622 127471662 41 GTAAAAGTGGATTTTACTTACACCTTGGAAAGTGCCTTGAC GTAAAAGTGGATTTTACTTACACCATGGAAAGTGCCTTGAC < 41bp 0.616307017235217 0.876488018676652 0.036896646 0.0407719 prediction 0.520362002882871 Functional Gain - RSPO3 ENSG00000146374 CDS Human protein_coding chr6:127471642 chr6:127471646 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_106485 0 0 0 0 2 RSPO3 chr6:127471571 3'AG 127471571 Downstream 76bp
chr6 127471646 127471646 1 + T A STAD 127471642 + 127471622 127471662 41 GTAAAAGTGGATTTTACTTACACCTTGGAAAGTGCCTTGAC GTAAAAGTGGATTTTACTTACACCATGGAAAGTGCCTTGAC < 41bp 0.616307017235217 0.876488018676652 0.036896646 0.0407719 prediction 0.520362002882871 Functional Gain - RSPO3 ENSG00000146374 CDS Human protein_coding chr6:127471642 chr6:127471646 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_106485 0 0 0 0 2 RSPO3 chr6:127471717 5'GT 127471717 Upstream 72bp
chr1 33134689 33134689 1 + T C BLCA 33134687 + 33134667 33134707 41 ATGTTTCCTGGCATCTACTCCATGAGTCTCTGTTTGGGTCA ATGTTTCCTGGCATCTACTCCACGAGTCTCTGTTTGGGTCA < 41bp 0.548143169582428 0.808323832004919 0.104614705 0.36371738 prediction 0.520361324844982 Functional Gain - RBBP4 ENSG00000162521 CDS Human protein_coding chr1:33134687 chr1:33134689 synonymous SNV . 0 23 hm5C_associated_SNPs_106486 0 0 1 0 1 RBBP4 chr1:33134733 5'GT 33134733 Upstream 45bp
chr1 1223363 1223363 1 + C A rs368294602 1223359 + 1223339 1223379 41 GAGCCCCTACGGCCACTGCACCGCCGGCGGGGAAGGCGTGG GAGCCCCTACGGCCACTGCACCGCAGGCGGGGAAGGCGTGG < 41bp 0.37100872742164 0.76017258709722 0.4163861 0.35750526 prediction 0.520345174194439 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1223359 chr1:1223363 synonymous SNV . 0 25 hm5C_associated_SNPs_106487 0 0 1 0 2 SCNN1D chr1:1223319 3'AG 1223319 Downstream 45bp
chr1 1223363 1223363 1 + C A rs368294602 1223359 + 1223339 1223379 41 GAGCCCCTACGGCCACTGCACCGCCGGCGGGGAAGGCGTGG GAGCCCCTACGGCCACTGCACCGCAGGCGGGGAAGGCGTGG < 41bp 0.37100872742164 0.76017258709722 0.4163861 0.35750526 prediction 0.520345174194439 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1223359 chr1:1223363 synonymous SNV . 0 25 hm5C_associated_SNPs_106487 0 0 1 0 2 SCNN1D chr1:1223417 5'GT 1223417 Upstream 55bp
chr19 48185256 48185256 1 + C G rs575946170 48185255 + 48185235 48185275 41 GAGGAGCCAGCAGCCCCTCTCCGCAGAGGGCCCCCACCTCT GAGGAGCCAGCAGCCCCTCTCGGCAGAGGGCCCCCACCTCT < 41bp 0.596849142704696 0.857014088426869 0.52921 0.9166729 prediction 0.520329891444345 Functional Gain - BICRA ENSG00000063169 CDS Human protein_coding chr19:48185255 chr19:48185256 synonymous SNV . 0 22 hm5C_associated_SNPs_106488 0 0 0 0 1 BICRA chr19:48185233 3'AG 48185233 Downstream 24bp
chr11 63283152 63283152 1 + C A UCEC 63283148 + 63283128 63283168 41 GGGGCAGAAGAAACTGATCTCAGCCCCCTTCCTCTTTTACC GGGGCAGAAGAAACTGATCTCAGCACCCTTCCTCTTTTACC < 41bp 0.344469361507702 0.760156594291353 0.3443786 0.6042811 prediction 0.520313188582706 Functional Gain - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63283148 chr11:63283152 synonymous SNV . 0 25 hm5C_associated_SNPs_106489 0 0 0 0 1 LGALS12 chr11:63283185 5'GT 63283185 Upstream 34bp
chr11 119025031 119025031 1 + C T HNSC 119025030 + 119025010 119025050 41 CCACGGGAGCTGAGGACCTTCCGCAAGATGTCCTGCTACAT CCACGGGAGCTGAGGACCTTCTGCAAGATGTCCTGCTACAT < 41bp 0.496186499484791 0.760151266560029 0.16302505 0.35656768 prediction 0.520302533120059 Functional Gain - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119025030 chr11:119025031 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_106490 0 0 0 0 2 ABCG4 chr11:119024970 3'AG 119024970 Downstream 62bp
chr11 119025031 119025031 1 + C T HNSC 119025030 + 119025010 119025050 41 CCACGGGAGCTGAGGACCTTCCGCAAGATGTCCTGCTACAT CCACGGGAGCTGAGGACCTTCTGCAAGATGTCCTGCTACAT < 41bp 0.496186499484791 0.760151266560029 0.16302505 0.35656768 prediction 0.520302533120059 Functional Gain - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119025030 chr11:119025031 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_106490 0 0 0 0 2 ABCG4 chr11:119025102 5'GT 119025102 Upstream 72bp
chr2 119735455 119735455 1 + T A STAD 119735451 + 119735431 119735471 41 GCAGCAAAGGCGATGGGGGTCTCATTGGCCCAAAAGGGGAA GCAGCAAAGGCGATGGGGGTCTCAATGGCCCAAAAGGGGAA < 41bp 0.414815321646878 0.760147305045536 0.15565622 0.8108614 prediction 0.520294610091072 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119735451 chr2:119735455 nonsynonymous SNV 0.026 1 25 hm5C_associated_SNPs_106492 0 0 0 0 2 MARCO chr2:119735404 3'AG 119735404 Downstream 52bp
chr2 119735455 119735455 1 + T A STAD 119735451 + 119735431 119735471 41 GCAGCAAAGGCGATGGGGGTCTCATTGGCCCAAAAGGGGAA GCAGCAAAGGCGATGGGGGTCTCAATGGCCCAAAAGGGGAA < 41bp 0.414815321646878 0.760147305045536 0.15565622 0.8108614 prediction 0.520294610091072 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119735451 chr2:119735455 nonsynonymous SNV 0.026 1 25 hm5C_associated_SNPs_106492 0 0 0 0 2 MARCO chr2:119735511 5'GT 119735511 Upstream 57bp
chr16 69177169 69177169 1 + C G rs144266389 69177168 + 69177148 69177188 41 GTGGGGTGTCGCCTTCTTGTCCGATGGCACTATCATAAGTG GTGGGGTGTCGCCTTCTTGTCGGATGGCACTATCATAAGTG < 41bp 0.444307238961886 0.760144932597748 0.23320356 0.8551179 prediction 0.520289865195496 Functional Gain - UTP4 ENSG00000141076 CDS Human protein_coding chr16:69177168 chr16:69177169 synonymous SNV . 0 22 hm5C_associated_SNPs_106493 0 0 1 0 1 UTP4 chr16:69177081 3'AG 69177081 Downstream 89bp
chr1 165859539 165859539 1 + T C COAD 165859537 + 165859517 165859557 41 TGAGCCAGGATAGCTTCTACCGTGTCCTTACCTCGGAGCAG TGAGCCAGGATAGCTTCTACCGCGTCCTTACCTCGGAGCAG < 41bp 0.497722378661583 0.760132335870794 0.3395533 0.3234225 prediction 0.520264671741588 Functional Gain - UCK2 ENSG00000143179 CDS Human protein_coding chr1:165859537 chr1:165859539 synonymous SNV . 0 23 hm5C_associated_SNPs_106494 0 0 1 0 2 UCK2 chr1:165859441 3'AG 165859441 Downstream 99bp
chr1 165859539 165859539 1 + T C COAD 165859537 + 165859517 165859557 41 TGAGCCAGGATAGCTTCTACCGTGTCCTTACCTCGGAGCAG TGAGCCAGGATAGCTTCTACCGCGTCCTTACCTCGGAGCAG < 41bp 0.497722378661583 0.760132335870794 0.3395533 0.3234225 prediction 0.520264671741588 Functional Gain - UCK2 ENSG00000143179 CDS Human protein_coding chr1:165859537 chr1:165859539 synonymous SNV . 0 23 hm5C_associated_SNPs_106494 0 0 1 0 2 UCK2 chr1:165859600 5'GT 165859600 Upstream 62bp
chr1 111778692 111778692 1 + T C rs144428915 111778690 + 111778670 111778710 41 GTCCTTTGACTTCCATGGGTCTTGGGAAAAGCCCCTTATCA GTCCTTTGACTTCCATGGGTCTCGGGAAAAGCCCCTTATCA < 41bp 0.51286402290892 0.772987981749624 0.20679373 0.111742884 prediction 0.520247917681408 Functional Gain - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111778690 chr1:111778692 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_106495 0 0 0 0 2 CHI3L2 chr1:111778646 3'AG 111778646 Downstream 47bp
chr1 111778692 111778692 1 + T C rs144428915 111778690 + 111778670 111778710 41 GTCCTTTGACTTCCATGGGTCTTGGGAAAAGCCCCTTATCA GTCCTTTGACTTCCATGGGTCTCGGGAAAAGCCCCTTATCA < 41bp 0.51286402290892 0.772987981749624 0.20679373 0.111742884 prediction 0.520247917681408 Functional Gain - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111778690 chr1:111778692 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_106495 0 0 0 0 2 CHI3L2 chr1:111778775 5'GT 111778775 Upstream 84bp
chr19 32896716 32896716 1 + C G rs10405382 32896715 + 32896695 32896735 41 GCGGTTCTGCCCTCCTTGTACCCGCGGCGCGCTGCGGCCCG GCGGTTCTGCCCTCCTTGTACGCGCGGCGCGCTGCGGCCCG < 41bp 0.541326742321852 0.801443053824906 0.41024655 0.41743687 prediction 0.520232623006109 Functional Gain - DPY19L3 ENSG00000178904 UTR5 Human protein_coding chr19:32896715 chr19:32896716 . . 0 22 hm5C_associated_SNPs_106498 0 1 1 0 1 DPY19L3 chr19:32896815 5'GT 32896815 Upstream 100bp
chr11 74876891 74876891 1 + C T SKCM 74876890 + 74876870 74876910 41 TGGCAGCCGGGTGCACCGACCCCGAATGATTGGCTATGGGG TGGCAGCCGGGTGCACCGACCTCGAATGATTGGCTATGGGG < 41bp 0.504267916398006 0.764355758040738 0.22470924 0.7621808 prediction 0.520175683285463 Functional Gain - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74876890 chr11:74876891 synonymous SNV . 0 22 hm5C_associated_SNPs_106503 0 0 1 0 1 SLCO2B1 chr11:74876832 3'AG 74876832 Downstream 60bp
chr1 38265332 38265332 1 + T C COAD 38265330 + 38265310 38265350 41 ACGACTCATACCTGACGTCCCCTGAGGCCTGGGCCCACCTC ACGACTCATACCTGACGTCCCCCGAGGCCTGGGCCCACCTC < 41bp 0.500853274808246 0.760940645321131 0.15672004 0.11150339 prediction 0.520174741025769 Functional Gain - MANEAL ENSG00000185090 CDS Human protein_coding chr1:38265330 chr1:38265332 synonymous SNV . 0 23 hm5C_associated_SNPs_106504 0 0 1 0 1 MANEAL chr1:38265239 3'AG 38265239 Downstream 94bp
chrX 100502129 100502129 1 + C T UCEC 100502128 + 100502108 100502148 41 TATCGCACTGCCATGAAACTCCGCAGAGTCCAGAAAGCCCT TATCGCACTGCCATGAAACTCTGCAGAGTCCAGAAAGCCCT < 41bp 0.497220216177396 0.760086529445422 0.3922645 0.37806168 prediction 0.520173058890843 Functional Gain - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100502128 chrX:100502129 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_106505 0 0 0 0 2 DRP2 chrX:100502079 3'AG 100502079 Downstream 51bp
chrX 100502129 100502129 1 + C T UCEC 100502128 + 100502108 100502148 41 TATCGCACTGCCATGAAACTCCGCAGAGTCCAGAAAGCCCT TATCGCACTGCCATGAAACTCTGCAGAGTCCAGAAAGCCCT < 41bp 0.497220216177396 0.760086529445422 0.3922645 0.37806168 prediction 0.520173058890843 Functional Gain - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100502128 chrX:100502129 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_106505 0 0 0 0 2 DRP2 chrX:100502153 5'GT 100502153 Upstream 25bp
chr7 100470284 100470284 1 + T C UCEC 100470282 + 100470262 100470302 41 TGCTCAGTGTGCGGTGGGGCCATAATGCCTGAGCCAGGTCA TGCTCAGTGTGCGGTGGGGCCACAATGCCTGAGCCAGGTCA < 41bp 0.495712621445265 0.760077456518005 0.20294833 0.18680188 prediction 0.52015491303601 Functional Gain - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100470282 chr7:100470284 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_106507 0 0 1 0 2 TRIP6 chr7:100470246 3'AG 100470246 Downstream 39bp
chr7 100470284 100470284 1 + T C UCEC 100470282 + 100470262 100470302 41 TGCTCAGTGTGCGGTGGGGCCATAATGCCTGAGCCAGGTCA TGCTCAGTGTGCGGTGGGGCCACAATGCCTGAGCCAGGTCA < 41bp 0.495712621445265 0.760077456518005 0.20294833 0.18680188 prediction 0.52015491303601 Functional Gain - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100470282 chr7:100470284 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_106507 0 0 1 0 2 TRIP6 chr7:100470366 5'GT 100470366 Upstream 83bp
chr9 139564106 139564106 1 + C G rs114826929 139564105 + 139564085 139564125 41 CAGCCCTGGGCTGGCCCCTGCCAGGCCTCGCTACGCGTGCT CAGCCCTGGGCTGGCCCCTGCGAGGCCTCGCTACGCGTGCT < 41bp 0.45320830443505 0.760047377333079 0.5012211 0.9081996 prediction 0.520094754666158 Functional Gain - EGFL7 ENSG00000172889 CDS Human protein_coding chr9:139564105 chr9:139564106 synonymous SNV . 0 22 hm5C_associated_SNPs_106511 0 0 1 0 2 EGFL7 chr9:139564058 3'AG 139564058 Downstream 49bp
chr9 139564106 139564106 1 + C G rs114826929 139564105 + 139564085 139564125 41 CAGCCCTGGGCTGGCCCCTGCCAGGCCTCGCTACGCGTGCT CAGCCCTGGGCTGGCCCCTGCGAGGCCTCGCTACGCGTGCT < 41bp 0.45320830443505 0.760047377333079 0.5012211 0.9081996 prediction 0.520094754666158 Functional Gain - EGFL7 ENSG00000172889 CDS Human protein_coding chr9:139564105 chr9:139564106 synonymous SNV . 0 22 hm5C_associated_SNPs_106511 0 0 1 0 2 EGFL7 chr9:139564173 5'GT 139564173 Upstream 68bp
chr2 71894611 71894611 1 + C A STAD 71894607 + 71894587 71894627 41 TCCCGGAGCACGTGGAGTCACGGCCCCTCTACAGCCCCCTG TCCCGGAGCACGTGGAGTCACGGCACCTCTACAGCCCCCTG < 41bp 0.623980021682764 0.883990687785461 0.63184947 0.41594437 prediction 0.520021332205394 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71894607 chr2:71894611 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_106514 0 0 0 0 1 DYSF chr2:71894645 5'GT 71894645 Upstream 35bp
chr11 118869151 118869151 1 + C A rs34451365 118869147 + 118869127 118869167 41 CTCTCTGCGGCAGGTGGAGGCGGCCCGCAAGGCCATCCGCG CTCTCTGCGGCAGGTGGAGGCGGCACGCAAGGCCATCCGCG < 41bp 0.648636943964228 0.908645317947878 0.87074673 0.90185636 prediction 0.5200167479673 Functional Gain - CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118869147 chr11:118869151 synonymous SNV . 0 25 hm5C_associated_SNPs_106515 0 0 1 0 1 CCDC84 chr11:118869140 3'AG 118869140 Downstream 12bp
chr16 30997777 30997777 1 + C A STAD 30997773 + 30997753 30997793 41 ACGTGATCGAGGCTTGTGTGCAGACCGGAACACGGTTCCTG ACGTGATCGAGGCTTGTGTGCAGAACGGAACACGGTTCCTG < 41bp 0.354563902010049 0.76000631427905 0.26933348 0.15033475 prediction 0.520012628558101 Functional Gain - HSD3B7 ENSG00000099377 CDS Human protein_coding chr16:30997773 chr16:30997777 nonsynonymous SNV 0.666 0 25 hm5C_associated_SNPs_106516 0 0 1 0 2 HSD3B7 chr16:30997744 3'AG 30997744 Downstream 34bp
chr16 30997777 30997777 1 + C A STAD 30997773 + 30997753 30997793 41 ACGTGATCGAGGCTTGTGTGCAGACCGGAACACGGTTCCTG ACGTGATCGAGGCTTGTGTGCAGAACGGAACACGGTTCCTG < 41bp 0.354563902010049 0.76000631427905 0.26933348 0.15033475 prediction 0.520012628558101 Functional Gain - HSD3B7 ENSG00000099377 CDS Human protein_coding chr16:30997773 chr16:30997777 nonsynonymous SNV 0.666 0 25 hm5C_associated_SNPs_106516 0 0 1 0 2 HSD3B7 chr16:30997852 5'GT 30997852 Upstream 76bp
chr14 90923425 90923425 1 + C G rs1294529 90923424 + 90923404 90923444 41 CATCATAAAAAGATACATGGCCGGATATGATGTTCCTTCTG CATCATAAAAAGATACATGGCGGGATATGATGTTCCTTCTG < 41bp 0.544197963061767 0.804203828949049 0.33031583 0.69065785 prediction 0.520011731774564 Functional Gain - LINC00642 ENSG00000233208 ncRNA_exonic Human lincRNA chr14:90923424 chr14:90923425 . . 0 22 hm5C_associated_SNPs_106517 0 0 0 0 2 LINC00642 chr14:90923363 3'AG 90923363 Downstream 63bp
chr14 90923425 90923425 1 + C G rs1294529 90923424 + 90923404 90923444 41 CATCATAAAAAGATACATGGCCGGATATGATGTTCCTTCTG CATCATAAAAAGATACATGGCGGGATATGATGTTCCTTCTG < 41bp 0.544197963061767 0.804203828949049 0.33031583 0.69065785 prediction 0.520011731774564 Functional Gain - LINC00642 ENSG00000233208 ncRNA_exonic Human lincRNA chr14:90923424 chr14:90923425 . . 0 22 hm5C_associated_SNPs_106517 0 0 0 0 2 LINC00642 chr14:90923502 5'GT 90923502 Upstream 78bp
chr6 26446023 26446023 1 + C T CESC 26446022 + 26446002 26446042 41 CACTGGCTGGTACCCCCAACCCCAAATAAAGTGGAGCGACA CACTGGCTGGTACCCCCAACCTCAAATAAAGTGGAGCGACA < 41bp 0.501821574393087 0.76181106648508 0.2546994 0.90978664 prediction 0.519978984183986 Functional Gain - BTN3A3 ENSG00000111801 CDS Human protein_coding chr6:26446022 chr6:26446023 synonymous SNV . 0 22 hm5C_associated_SNPs_106521 0 0 0 0 1 BTN3A3 chr6:26445932 3'AG 26445932 Downstream 92bp
chr1 17274918 17274918 1 + T G ACC 17274916 + 17274896 17274936 41 AGGCGCTGGAGCGAGCGGCCCGTGAGAAGGAGGCGCTAGCC AGGCGCTGGAGCGAGCGGCCCGGGAGAAGGAGGCGCTAGCC < 41bp 0.615516396925846 0.875497390493152 0.869354 0.9160073 prediction 0.519961987134611 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17274916 chr1:17274918 synonymous SNV . 0 23 hm5C_associated_SNPs_106523 0 0 0 0 1 CROCC chr1:17274826 3'AG 17274826 Downstream 93bp
chr19 55087568 55087568 1 + T A LUAD 55087564 + 55087544 55087584 41 TCCCCAGTGACCCCCTGGAGCTCGTGGTCTCAGGTGAGGGC TCCCCAGTGACCCCCTGGAGCTCGAGGTCTCAGGTGAGGGC < 41bp 0.439312455593522 0.759978692068491 0.019898117 0.0656603 prediction 0.519957384136982 Functional Gain - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55087564 chr19:55087568 nonsynonymous SNV 0.147 2 25 hm5C_associated_SNPs_106524 0 0 0 0 1 LILRA2 chr19:55087576 5'GT 55087576 Upstream 9bp
chr11 14276159 14276159 1 + T A BLCA 14276155 + 14276135 14276175 41 ACCATGATGGGCCCTAGTCCCGACTGGAACGTAGGCTTATC ACCATGATGGGCCCTAGTCCCGACAGGAACGTAGGCTTATC < 41bp 0.436096005157786 0.759977410146884 0.19103658 0.49694347 prediction 0.519954820293769 Functional Gain - SPON1 ENSG00000152268 ncRNA_exonic Human other chr11:14276155 chr11:14276159 . 0.998 3 25 hm5C_associated_SNPs_106525 0 0 1 0 1 SPON1 chr11:14276074 3'AG 14276074 Downstream 86bp
chr4 41941219 41941219 1 + T C BLCA 41941217 + 41941197 41941237 41 CTCTGGTAATTTGCAGGTTGCATGAAGCAGCAAGCTTTTAC CTCTGGTAATTTGCAGGTTGCACGAAGCAGCAAGCTTTTAC < 41bp 0.491038932921147 0.759975875065996 0.32264125 0.1735627 prediction 0.519951750131992 Functional Gain - TMEM33 ENSG00000109133 CDS Human protein_coding chr4:41941217 chr4:41941219 synonymous SNV . 0 23 hm5C_associated_SNPs_106526 0 0 1 0 1 TMEM33 chr4:41941213 3'AG 41941213 Downstream 7bp
chr6 35255546 35255546 1 + T C rs34368976 35255544 + 35255524 35255564 41 GCCGTACAGACAGAGGTGGGCTTGGAGGACCTGGCAGCAGA GCCGTACAGACAGAGGTGGGCTCGGAGGACCTGGCAGCAGA < 41bp 0.512481846293098 0.772432885008399 0.27286768 0.37489346 prediction 0.519902077430603 Functional Gain - ZNF76 ENSG00000065029 CDS Human protein_coding chr6:35255544 chr6:35255546 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_106530 0 0 1 0 1 ZNF76 chr6:35255622 5'GT 35255622 Upstream 77bp
chr12 52282078 52282078 1 + C G rs79384471 52282077 + 52282057 52282097 41 CCGCGGAGCCTGGGCTGTGCCCCGCGTTGACTGCCTCATAG CCGCGGAGCCTGGGCTGTGCCGCGCGTTGACTGCCTCATAG < 41bp 0.580687122248268 0.840632755091461 0.06258014 0.14529696 prediction 0.519891265686386 Functional Gain - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52282077 chr12:52282078 synonymous SNV . 0 22 hm5C_associated_SNPs_106531 0 0 0 0 1 ANKRD33 chr12:52282115 5'GT 52282115 Upstream 38bp
chr8 98657041 98657041 1 + C G rs188271601 98657037 + 98657017 98657057 41 GTGCCGGCCGCGGCCCCCGACGACCTGGCCTTGCTGAAGAA GTGCCGGCCGCGGCCCCCGACGACGTGGCCTTGCTGAAGAA < 41bp 0.541966811639199 0.801888529286413 0.044894487 0.17563978 prediction 0.519843435294428 Functional Gain - MTDH ENSG00000147649 CDS Human protein_coding chr8:98657037 chr8:98657041 nonsynonymous SNV 0.112 0 25 hm5C_associated_SNPs_106537 0 0 1 0 1 MTDH chr8:98657115 5'GT 98657115 Upstream 75bp
chr5 43653235 43653235 1 + C A UCEC 43653231 + 43653211 43653251 41 TGATTGGGGTTGCTGGAGGACTGGCAGCCACCCTCGGAGTC TGATTGGGGTTGCTGGAGGACTGGAAGCCACCCTCGGAGTC < 41bp 0.665705716733868 0.925594195836655 0.7609187 0.603647 prediction 0.519776958205574 Functional Gain - NNT ENSG00000112992 CDS Human protein_coding chr5:43653231 chr5:43653235 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_106540 0 0 1 0 1 NNT chr5:43653315 5'GT 43653315 Upstream 81bp
chr7 39606101 39606101 1 + C G HNSC 39606097 + 39606077 39606117 41 TGACGAAGAAGCAGACGAGTCGCTCCTGGCGCAGCGGGAAT TGACGAAGAAGCAGACGAGTCGCTGCTGGCGCAGCGGGAAT < 41bp 0.512860169554645 0.772744191618326 0.1801956 0.1456356 prediction 0.519768044127361 Functional Gain - YAE1D1 ENSG00000241127 CDS Human protein_coding chr7:39606097 chr7:39606101 synonymous SNV . 0 25 hm5C_associated_SNPs_106542 0 0 1 0 1 YAE1D1 chr7:39606146 5'GT 39606146 Upstream 46bp
chr2 175289314 175289314 1 + T C rs17255817 175289312 + 175289292 175289332 41 AAAAGAAATCACATTTTAAGCCTGACAGAAGACACCCACTC AAAAGAAATCACATTTTAAGCCCGACAGAAGACACCCACTC < 41bp 0.488709635511139 0.759879107297636 0.0072004795 0.009863704 prediction 0.519758214595272 Functional Gain - SCRN3 ENSG00000144306 CDS Human protein_coding chr2:175289312 chr2:175289314 synonymous SNV . 0 23 hm5C_associated_SNPs_106544 0 0 1 0 1 SCRN3 chr2:175289377 5'GT 175289377 Upstream 64bp
chr7 891069 891069 1 + C A STAD 891065 + 891045 891085 41 GCAGGATCGGAGCTGTGGGCCAGGCTGTGTCCAGGACGGCG GCAGGATCGGAGCTGTGGGCCAGGATGTGTCCAGGACGGCG < 41bp 0.633756198420517 0.893613511717002 0.29020894 0.37519455 prediction 0.519714626592972 Functional Gain - SUN1 ENSG00000164828 CDS Human protein_coding chr7:891065 chr7:891069 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_106549 0 0 1 0 2 SUN1 chr7:891021 3'AG 891021 Downstream 49bp
chr7 891069 891069 1 + C A STAD 891065 + 891045 891085 41 GCAGGATCGGAGCTGTGGGCCAGGCTGTGTCCAGGACGGCG GCAGGATCGGAGCTGTGGGCCAGGATGTGTCCAGGACGGCG < 41bp 0.633756198420517 0.893613511717002 0.29020894 0.37519455 prediction 0.519714626592972 Functional Gain - SUN1 ENSG00000164828 CDS Human protein_coding chr7:891065 chr7:891069 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_106549 0 0 1 0 2 SUN1 chr7:891119 5'GT 891119 Upstream 51bp
chr19 56372857 56372857 1 + C A LIHC 56372853 + 56372833 56372873 41 GGACAGCACCCTCAGCGAGTCGACCTTTGTGACCTGGTGTA GGACAGCACCCTCAGCGAGTCGACATTTGTGACCTGGTGTA < 41bp 0.345672483591502 0.759854911057699 0.0302715 0.1697424 prediction 0.519709822115398 Functional Gain - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56372853 chr19:56372857 synonymous SNV . 0 25 hm5C_associated_SNPs_106550 0 0 0 0 1 NLRP4 chr19:56372913 5'GT 56372913 Upstream 57bp
chr17 76203060 76203060 1 + T G BLCA 76203058 + 76203038 76203078 41 CTGGTCCACGTGCATCCCACCTTGGGAAGCCTCTCCAAAGA CTGGTCCACGTGCATCCCACCTGGGGAAGCCTCTCCAAAGA < 41bp 0.61190097296684 0.871714529838833 0.093838036 0.7235879 prediction 0.519627113743987 Functional Gain - AFMID ENSG00000183077 CDS Human protein_coding chr17:76203058 chr17:76203060 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_106555 0 0 1 0 1 AFMID chr17:76202992 3'AG 76202992 Downstream 69bp
chr22 39439011 39439011 1 + T G PRAD 39439009 + 39438989 39439029 41 ATAATAGACCCATCCTTTCTCGTCGGAATACCGTCTGGCTG ATAATAGACCCATCCTTTCTCGGCGGAATACCGTCTGGCTG < 41bp 0.418406715704288 0.75980868415455 0.8256685 0.9589319 prediction 0.5196173683091 Functional Gain - APOBEC3F ENSG00000128394 CDS Human protein_coding chr22:39439009 chr22:39439011 synonymous SNV . 0 23 hm5C_associated_SNPs_106557 0 0 1 0 2 APOBEC3F chr22:39438942 3'AG 39438942 Downstream 70bp
chr22 39439011 39439011 1 + T G PRAD 39439009 + 39438989 39439029 41 ATAATAGACCCATCCTTTCTCGTCGGAATACCGTCTGGCTG ATAATAGACCCATCCTTTCTCGGCGGAATACCGTCTGGCTG < 41bp 0.418406715704288 0.75980868415455 0.8256685 0.9589319 prediction 0.5196173683091 Functional Gain - APOBEC3F ENSG00000128394 CDS Human protein_coding chr22:39439009 chr22:39439011 synonymous SNV . 0 23 hm5C_associated_SNPs_106557 0 0 1 0 2 APOBEC3F chr22:39439095 5'GT 39439095 Upstream 85bp
chr12 29423406 29423406 1 + T G STAD 29423403 + 29423383 29423423 41 ATGTCCACAATTGCAGCTTTCTATGGCGGCAAGTCCATTCT ATGTCCACAATTGCAGCTTTCTAGGGCGGCAAGTCCATTCT < 41bp 0.37542956283773 0.759788147191529 0.070346504 0.55432206 prediction 0.519576294383057 Functional Gain - FAR2 ENSG00000064763 CDS Human protein_coding chr12:29423403 chr12:29423406 stopgain 0.921 1 24 hm5C_associated_SNPs_106560 0 0 0 0 1 FAR2 chr12:29423345 3'AG 29423345 Downstream 62bp
chr13 42877901 42877901 1 + C A rs201525107 42877897 + 42877877 42877917 41 GCTGAGCAGTACCAGCCTGGCAGCCGACAGTGGGATCGGAC GCTGAGCAGTACCAGCCTGGCAGCAGACAGTGGGATCGGAC < 41bp 0.367745264637382 0.759774534847466 0.387402 0.27145532 prediction 0.519549069694931 Functional Gain - AKAP11 ENSG00000023516 CDS Human protein_coding chr13:42877897 chr13:42877901 synonymous SNV . 0 25 hm5C_associated_SNPs_106561 0 0 1 0 1 AKAP11 chr13:42877999 5'GT 42877999 Upstream 99bp
chr1 161187847 161187847 1 + C A UCEC 161187843 + 161187823 161187863 41 TTTCTGTATGGAATTGTCCTCACCCTCCTCTACTGTCGACT TTTCTGTATGGAATTGTCCTCACCATCCTCTACTGTCGACT < 41bp 0.342439960233336 0.759771591985224 0.008204579 0.01868704 prediction 0.519543183970447 Functional Gain - FCER1G ENSG00000158869 CDS Human protein_coding chr1:161187843 chr1:161187847 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_106563 0 0 0 0 2 FCER1G chr1:161187776 3'AG 161187776 Downstream 72bp
chr1 161187847 161187847 1 + C A UCEC 161187843 + 161187823 161187863 41 TTTCTGTATGGAATTGTCCTCACCCTCCTCTACTGTCGACT TTTCTGTATGGAATTGTCCTCACCATCCTCTACTGTCGACT < 41bp 0.342439960233336 0.759771591985224 0.008204579 0.01868704 prediction 0.519543183970447 Functional Gain - FCER1G ENSG00000158869 CDS Human protein_coding chr1:161187843 chr1:161187847 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_106563 0 0 0 0 2 FCER1G chr1:161187867 5'GT 161187867 Upstream 21bp
chr17 36912206 36912206 1 + C G UCEC 36912205 + 36912185 36912225 41 CGGCAGATCAAACCTTATACCCTCATGAGCATGGTGGCCAA CGGCAGATCAAACCTTATACCGTCATGAGCATGGTGGCCAA < 41bp 0.581956201950209 0.841726843010549 0.053315997 0.16361412 prediction 0.51954128212068 Functional Gain - PSMB3 ENSG00000108294 CDS Human other chr17:36912205 chr17:36912206 nonsynonymous SNV 0.987 1 22 hm5C_associated_SNPs_106564 0 0 1 0 2 PSMB3 chr17:36912136 3'AG 36912136 Downstream 71bp
chr17 36912206 36912206 1 + C G UCEC 36912205 + 36912185 36912225 41 CGGCAGATCAAACCTTATACCCTCATGAGCATGGTGGCCAA CGGCAGATCAAACCTTATACCGTCATGAGCATGGTGGCCAA < 41bp 0.581956201950209 0.841726843010549 0.053315997 0.16361412 prediction 0.51954128212068 Functional Gain - PSMB3 ENSG00000108294 CDS Human other chr17:36912205 chr17:36912206 nonsynonymous SNV 0.987 1 22 hm5C_associated_SNPs_106564 0 0 1 0 2 PSMB3 chr17:36912243 5'GT 36912243 Upstream 38bp
chr19 30313009 30313009 1 + C T SKCM 30313008 + 30312988 30313028 41 AAGTGCTACTGCCGCAGTATCCCCAGCAAATCTTTATACAG AAGTGCTACTGCCGCAGTATCTCCAGCAAATCTTTATACAG < 41bp 0.526334190802296 0.786076474303013 0.051812053 0.94261456 prediction 0.519484567001434 Functional Gain - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30313008 chr19:30313009 nonsynonymous SNV 0.986 3 22 hm5C_associated_SNPs_106566 0 0 1 0 1 CCNE1 chr19:30313037 5'GT 30313037 Upstream 29bp
chr12 53837259 53837259 1 + C A UCEC 53837255 + 53837235 53837275 41 CCCACCCACCACCTATTAATCCACCCTTTCCCCCAGGCCCC CCCACCCACCACCTATTAATCCACACTTTCCCCCAGGCCCC < 41bp 0.353736200607224 0.75970359675545 0.23936188 0.12977937 prediction 0.5194071935109 Functional Gain - PRR13 ENSG00000205352 CDS Human protein_coding chr12:53837255 chr12:53837259 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_106569 0 0 0 0 1 PRR13 chr12:53837175 3'AG 53837175 Downstream 85bp
chr17 73489851 73489851 1 + T C STAD 73489849 + 73489829 73489869 41 TCTGCCTTCGCCTACAAGCCCATGAACTGCGCCCTGTCCTC TCTGCCTTCGCCTACAAGCCCACGAACTGCGCCCTGTCCTC < 41bp 0.485948912233192 0.759701032027864 0.16919395 0.26990575 prediction 0.519402064055728 Functional Gain - TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73489849 chr17:73489851 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_106570 0 0 0 0 1 TMEM94 chr17:73489780 3'AG 73489780 Downstream 72bp
chr15 74573116 74573116 1 + C A LUSC 74573112 + 74573092 74573132 41 CTGACAGGGAAAGGCTTGGACGGGCTTCACGTGGAGCGGCT CTGACAGGGAAAGGCTTGGACGGGATTCACGTGGAGCGGCT < 41bp 0.657500129445144 0.917195861946541 0.84727293 0.8462416 prediction 0.519391465002794 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74573112 chr15:74573116 nonsynonymous SNV 0.017 3 25 hm5C_associated_SNPs_106571 0 0 0 0 1 CCDC33 chr15:74573142 5'GT 74573142 Upstream 27bp
chr11 1078666 1078666 1 + C G rs531204958 1078662 + 1078642 1078682 41 AACTGGAGGACCGCCACGCTCTGCCGTAAGCCCCGGCGCCT AACTGGAGGACCGCCACGCTCTGCGGTAAGCCCCGGCGCCT < 41bp 0.528049879797813 0.787736153431829 0.7379154 0.8776417 prediction 0.519372547268032 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1078662 chr11:1078666 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_106572 0 0 0 0 1 MUC2 chr11:1078666 5'GT 1078666 Upstream 1bp
chr8 105361774 105361774 1 + C A LUSC 105361770 + 105361750 105361790 41 GTGAGCAAGCAGTTTCAAAGCTTGCCAGGGTTTGAGGTTCA GTGAGCAAGCAGTTTCAAAGCTTGACAGGGTTTGAGGTTCA < 41bp 0.347231402240463 0.759680336143117 0.12324667 0.108609855 prediction 0.519360672286234 Functional Gain - DCSTAMP ENSG00000164935 CDS Human protein_coding chr8:105361770 chr8:105361774 nonsynonymous SNV 0.907 4 25 hm5C_associated_SNPs_106573 0 0 0 0 1 DCSTAMP chr8:105361809 5'GT 105361809 Upstream 36bp
chr12 124239052 124239052 1 + T G CESC 124239050 + 124239030 124239070 41 ATCTCCAACACCGCCTCCTACCTGAGGCTCTGGGCGCTTAG ATCTCCAACACCGCCTCCTACCGGAGGCTCTGGGCGCTTAG < 41bp 0.407932320266474 0.759677562230143 0.58057404 0.94714844 prediction 0.519355124460286 Functional Gain - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124239050 chr12:124239052 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_106574 0 0 1 0 2 ATP6V0A2 chr12:124238967 3'AG 124238967 Downstream 86bp
chr12 124239052 124239052 1 + T G CESC 124239050 + 124239030 124239070 41 ATCTCCAACACCGCCTCCTACCTGAGGCTCTGGGCGCTTAG ATCTCCAACACCGCCTCCTACCGGAGGCTCTGGGCGCTTAG < 41bp 0.407932320266474 0.759677562230143 0.58057404 0.94714844 prediction 0.519355124460286 Functional Gain - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124239050 chr12:124239052 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_106574 0 0 1 0 2 ATP6V0A2 chr12:124239084 5'GT 124239084 Upstream 33bp
chrX 49103973 49103973 1 + C A rs183877705 49103969 + 49103949 49103989 41 CCCCTTAGGAGCCCCAGGCCCAGGCCACTCAGGTGTCAGAT CCCCTTAGGAGCCCCAGGCCCAGGACACTCAGGTGTCAGAT < 41bp 0.654289996910209 0.913953393908134 0.75557244 0.9204824 prediction 0.519326793995852 Functional Gain - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49103969 chrX:49103973 nonsynonymous SNV 0.930 1 25 hm5C_associated_SNPs_106576 1 0 0 0 2 CCDC22 chrX:49103957 3'AG 49103957 Downstream 17bp
chrX 49103973 49103973 1 + C A rs183877705 49103969 + 49103949 49103989 41 CCCCTTAGGAGCCCCAGGCCCAGGCCACTCAGGTGTCAGAT CCCCTTAGGAGCCCCAGGCCCAGGACACTCAGGTGTCAGAT < 41bp 0.654289996910209 0.913953393908134 0.75557244 0.9204824 prediction 0.519326793995852 Functional Gain - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49103969 chrX:49103973 nonsynonymous SNV 0.930 1 25 hm5C_associated_SNPs_106576 1 0 0 0 2 CCDC22 chrX:49104019 5'GT 49104019 Upstream 47bp
chr19 21216970 21216970 1 + C A rs144051683 21216966 + 21216946 21216986 41 AGCCCTGGAATATGAAGAGACATGCGATGGTAGATCAACCC AGCCCTGGAATATGAAGAGACATGAGATGGTAGATCAACCC < 41bp 0.364928033932303 0.759641048154565 0.065063745 0.2132256 prediction 0.51928209630913 Functional Gain - ZNF430 ENSG00000118620 CDS Human protein_coding chr19:21216966 chr19:21216970 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_106578 0 0 1 0 3 ZNF430 chr19:21216892 3'AG 21216892 Downstream 79bp
chr19 21216970 21216970 1 + C A rs144051683 21216966 + 21216946 21216986 41 AGCCCTGGAATATGAAGAGACATGCGATGGTAGATCAACCC AGCCCTGGAATATGAAGAGACATGAGATGGTAGATCAACCC < 41bp 0.364928033932303 0.759641048154565 0.065063745 0.2132256 prediction 0.51928209630913 Functional Gain - ZNF430 ENSG00000118620 CDS Human protein_coding chr19:21216966 chr19:21216970 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_106578 0 0 1 0 3 ZNF430 chr19:21216895 3'AG 21216895 Downstream 76bp
chr19 21216970 21216970 1 + C A rs144051683 21216966 + 21216946 21216986 41 AGCCCTGGAATATGAAGAGACATGCGATGGTAGATCAACCC AGCCCTGGAATATGAAGAGACATGAGATGGTAGATCAACCC < 41bp 0.364928033932303 0.759641048154565 0.065063745 0.2132256 prediction 0.51928209630913 Functional Gain - ZNF430 ENSG00000118620 CDS Human protein_coding chr19:21216966 chr19:21216970 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_106578 0 0 1 0 3 ZNF430 chr19:21216990 5'GT 21216990 Upstream 21bp
chr4 1737512 1737512 1 + C T CESC 1737511 + 1737491 1737531 41 TACCTCAAGTTCGACCCCCTCCTGAGGGACAGTCCTGGTAG TACCTCAAGTTCGACCCCCTCTTGAGGGACAGTCCTGGTAG < 41bp 0.501046930578371 0.76064437220592 0.1270014 0.14370328 prediction 0.519194883255097 Functional Gain - TACC3 ENSG00000013810 CDS Human protein_coding chr4:1737511 chr4:1737512 synonymous SNV . 0 22 hm5C_associated_SNPs_106582 0 0 1 0 2 TACC3 chr4:1737458 3'AG 1737458 Downstream 55bp
chr4 1737512 1737512 1 + C T CESC 1737511 + 1737491 1737531 41 TACCTCAAGTTCGACCCCCTCCTGAGGGACAGTCCTGGTAG TACCTCAAGTTCGACCCCCTCTTGAGGGACAGTCCTGGTAG < 41bp 0.501046930578371 0.76064437220592 0.1270014 0.14370328 prediction 0.519194883255097 Functional Gain - TACC3 ENSG00000013810 CDS Human protein_coding chr4:1737511 chr4:1737512 synonymous SNV . 0 22 hm5C_associated_SNPs_106582 0 0 1 0 2 TACC3 chr4:1737561 5'GT 1737561 Upstream 50bp
chr18 50994318 50994318 1 + C A UCEC 50994314 + 50994294 50994334 41 TGTCCACTCTGGAGAGGTCGCTGGCTGCACGCCGAGCCCCC TGTCCACTCTGGAGAGGTCGCTGGATGCACGCCGAGCCCCC < 41bp 0.510723721512403 0.770319906370596 0.7483291 0.8979327 prediction 0.519192369716385 Functional Gain - DCC ENSG00000187323 CDS Human protein_coding chr18:50994314 chr18:50994318 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_106583 0 0 0 0 2 DCC chr18:50994264 3'AG 50994264 Downstream 55bp
chr18 50994318 50994318 1 + C A UCEC 50994314 + 50994294 50994334 41 TGTCCACTCTGGAGAGGTCGCTGGCTGCACGCCGAGCCCCC TGTCCACTCTGGAGAGGTCGCTGGATGCACGCCGAGCCCCC < 41bp 0.510723721512403 0.770319906370596 0.7483291 0.8979327 prediction 0.519192369716385 Functional Gain - DCC ENSG00000187323 CDS Human protein_coding chr18:50994314 chr18:50994318 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_106583 0 0 0 0 2 DCC chr18:50994380 5'GT 50994380 Upstream 63bp
chr20 8609040 8609040 1 + C A LAML 8609036 + 8609016 8609056 41 GGGCCTGACCTCGTGAACATCTCCCATTTGAATCTCGTGGC GGGCCTGACCTCGTGAACATCTCCAATTTGAATCTCGTGGC < 41bp 0.379229675321663 0.7595939954079 0.3397321 0.95619285 prediction 0.5191879908158 Functional Gain - PLCB1 ENSG00000182621 CDS Human protein_coding chr20:8609036 chr20:8609040 nonsynonymous SNV 0.957 2 25 hm5C_associated_SNPs_106584 0 0 1 0 2 PLCB1 chr20:8608941 3'AG 8608941 Downstream 100bp
chr20 8609040 8609040 1 + C A LAML 8609036 + 8609016 8609056 41 GGGCCTGACCTCGTGAACATCTCCCATTTGAATCTCGTGGC GGGCCTGACCTCGTGAACATCTCCAATTTGAATCTCGTGGC < 41bp 0.379229675321663 0.7595939954079 0.3397321 0.95619285 prediction 0.5191879908158 Functional Gain - PLCB1 ENSG00000182621 CDS Human protein_coding chr20:8609036 chr20:8609040 nonsynonymous SNV 0.957 2 25 hm5C_associated_SNPs_106584 0 0 1 0 2 PLCB1 chr20:8609078 5'GT 8609078 Upstream 39bp
chr7 150417427 150417427 1 + C T SKCM 150417426 + 150417406 150417446 41 ACCTGCTCTCGGCCCCCGGACCCCACGCGCTGCTCCTGGTG ACCTGCTCTCGGCCCCCGGACTCCACGCGCTGCTCCTGGTG < 41bp 0.520805005932735 0.780392893011492 0.05005163 0.92865634 prediction 0.519175774157514 Functional Gain - GIMAP1;GIMAP1-GIMAP5 ENSG00000213203 CDS Human protein_coding chr7:150417426 chr7:150417427 nonsynonymous SNV 0.233 1 22 hm5C_associated_SNPs_106586 0 0 0 0 1 GIMAP1;GIMAP1-GIMAP5 chr7:150417494 5'GT 150417494 Upstream 68bp
chr1 236917339 236917339 1 + C A rs144680712 236917335 + 236917315 236917355 41 GCGTCTGAGGCGCCAGTTTGCTGCCCAAGCCAATGCCATTG GCGTCTGAGGCGCCAGTTTGCTGCACAAGCCAATGCCATTG < 41bp 0.666318903313179 0.925892083211254 0.19874209 0.22738749 prediction 0.51914635979615 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236917335 chr1:236917339 synonymous SNV . 0 25 hm5C_associated_SNPs_106587 3 0 0 0 2 ACTN2 chr1:236917247 3'AG 236917247 Downstream 93bp
chr1 236917339 236917339 1 + C A rs144680712 236917335 + 236917315 236917355 41 GCGTCTGAGGCGCCAGTTTGCTGCCCAAGCCAATGCCATTG GCGTCTGAGGCGCCAGTTTGCTGCACAAGCCAATGCCATTG < 41bp 0.666318903313179 0.925892083211254 0.19874209 0.22738749 prediction 0.51914635979615 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236917335 chr1:236917339 synonymous SNV . 0 25 hm5C_associated_SNPs_106587 3 0 0 0 2 ACTN2 chr1:236917381 5'GT 236917381 Upstream 43bp
chr8 68956773 68956773 1 + T C LGG 68956771 + 68956751 68956791 41 ATGGACATCGGTACCTTTTTCGTGGCCGGATCAACACGGAG ATGGACATCGGTACCTTTTTCGCGGCCGGATCAACACGGAG < 41bp 0.493555743573508 0.75956133702394 0.8576499 0.8191157 prediction 0.51912267404788 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:68956771 chr8:68956773 synonymous SNV . 0 23 hm5C_associated_SNPs_106590 0 0 0 0 2 PREX2 chr8:68956722 3'AG 68956722 Downstream 52bp
chr8 68956773 68956773 1 + T C LGG 68956771 + 68956751 68956791 41 ATGGACATCGGTACCTTTTTCGTGGCCGGATCAACACGGAG ATGGACATCGGTACCTTTTTCGCGGCCGGATCAACACGGAG < 41bp 0.493555743573508 0.75956133702394 0.8576499 0.8191157 prediction 0.51912267404788 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:68956771 chr8:68956773 synonymous SNV . 0 23 hm5C_associated_SNPs_106590 0 0 0 0 2 PREX2 chr8:68956825 5'GT 68956825 Upstream 53bp
chr1 220970101 220970101 1 + C G rs150126154 220970097 + 220970077 220970117 41 TGCACTTCGAGCCTCACATGCGACCGAGACGTCCTCATCAA TGCACTTCGAGCCTCACATGCGACGGAGACGTCCTCATCAA < 41bp 0.555355189452678 0.814916204619694 0.31457093 0.65484524 prediction 0.519122030334032 Functional Gain - MARC1 ENSG00000186205 CDS Human protein_coding chr1:220970097 chr1:220970101 nonsynonymous SNV 0.068 2 25 hm5C_associated_SNPs_106591 0 0 1 0 1 MARC1 chr1:220970147 5'GT 220970147 Upstream 47bp
chr4 103459077 103459077 1 + T G SKCM 103459074 + 103459054 103459094 41 CATGGTGGACTACCTGGTGCCTCTAGTGAAAAGAACAAGAA CATGGTGGACTACCTGGTGCCTCGAGTGAAAAGAACAAGAA < 41bp 0.399312171062938 0.759559710997126 0.690718 0.23931208 prediction 0.519119421994251 Functional Gain - NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103459074 chr4:103459077 synonymous SNV . 0 24 hm5C_associated_SNPs_106593 0 0 1 0 2 NFKB1 chr4:103459015 3'AG 103459015 Downstream 63bp
chr4 103459077 103459077 1 + T G SKCM 103459074 + 103459054 103459094 41 CATGGTGGACTACCTGGTGCCTCTAGTGAAAAGAACAAGAA CATGGTGGACTACCTGGTGCCTCGAGTGAAAAGAACAAGAA < 41bp 0.399312171062938 0.759559710997126 0.690718 0.23931208 prediction 0.519119421994251 Functional Gain - NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103459074 chr4:103459077 synonymous SNV . 0 24 hm5C_associated_SNPs_106593 0 0 1 0 2 NFKB1 chr4:103459113 5'GT 103459113 Upstream 37bp
chr3 53752764 53752764 1 + T G rs78911396 53752761 + 53752741 53752781 41 CGGGGCCCTCTGGGTGTCGGCGGTGGGGGTAAAGGCCTGAT CGGGGCCCTCTGGGTGTCGGCGGGGGGGGTAAAGGCCTGAT < 41bp 0.392153254827717 0.759555885184012 0.8993353 0.9267262 prediction 0.519111770368023 Functional Gain - CACNA1D ENSG00000157388 CDS Human protein_coding chr3:53752761 chr3:53752764 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_106595 0 0 0 0 2 CACNA1D chr3:53752709 3'AG 53752709 Downstream 56bp
chr3 53752764 53752764 1 + T G rs78911396 53752761 + 53752741 53752781 41 CGGGGCCCTCTGGGTGTCGGCGGTGGGGGTAAAGGCCTGAT CGGGGCCCTCTGGGTGTCGGCGGGGGGGGTAAAGGCCTGAT < 41bp 0.392153254827717 0.759555885184012 0.8993353 0.9267262 prediction 0.519111770368023 Functional Gain - CACNA1D ENSG00000157388 CDS Human protein_coding chr3:53752761 chr3:53752764 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_106595 0 0 0 0 2 CACNA1D chr3:53752768 5'GT 53752768 Upstream 5bp
chr16 88017810 88017810 1 + C T HNSC 88017809 + 88017789 88017829 41 CAGCACAGCCCCATCCAGGTCCCCATGGTGGCCGGCTCCCC CAGCACAGCCCCATCCAGGTCTCCATGGTGGCCGGCTCCCC < 41bp 0.537551620898379 0.797067222545905 0.51545537 0.9670783 prediction 0.519031203295053 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88017809 chr16:88017810 nonsynonymous SNV 0.990 3 22 hm5C_associated_SNPs_106598 0 0 1 0 1 BANP chr16:88017865 5'GT 88017865 Upstream 56bp
chr4 37863199 37863199 1 + C A PAAD 37863195 + 37863175 37863215 41 CTATTGAAGAACATTTTTTCCAGCCACAGAAGTACAATCTG CTATTGAAGAACATTTTTTCCAGCAACAGAAGTACAATCTG < 41bp 0.368877024106315 0.759506123335098 0.12315893 0.23248246 prediction 0.519012246670195 Functional Gain - PGM2 ENSG00000169299 CDS Human protein_coding chr4:37863195 chr4:37863199 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_106599 0 0 1 0 1 PGM2 chr4:37863131 3'AG 37863131 Downstream 69bp
chr16 55519270 55519270 1 + C A LUAD 55519266 + 55519246 55519286 41 GGACTCCTGGCTCATGCCTTCGCCCCAGGCACTGGTGTTGG GGACTCCTGGCTCATGCCTTCGCCACAGGCACTGGTGTTGG < 41bp 0.322616992038746 0.759503758093418 0.115566045 0.25222886 prediction 0.519007516186835 Functional Gain - MMP2 ENSG00000087245 CDS Human protein_coding chr16:55519266 chr16:55519270 nonsynonymous SNV 0.949 4 25 hm5C_associated_SNPs_106600 0 0 0 0 2 MMP2 chr16:55519211 3'AG 55519211 Downstream 60bp
chr16 55519270 55519270 1 + C A LUAD 55519266 + 55519246 55519286 41 GGACTCCTGGCTCATGCCTTCGCCCCAGGCACTGGTGTTGG GGACTCCTGGCTCATGCCTTCGCCACAGGCACTGGTGTTGG < 41bp 0.322616992038746 0.759503758093418 0.115566045 0.25222886 prediction 0.519007516186835 Functional Gain - MMP2 ENSG00000087245 CDS Human protein_coding chr16:55519266 chr16:55519270 nonsynonymous SNV 0.949 4 25 hm5C_associated_SNPs_106600 0 0 0 0 2 MMP2 chr16:55519339 5'GT 55519339 Upstream 70bp
chr19 33464132 33464132 1 + C A PRAD 33464128 + 33464108 33464148 41 AAAGAACCCCCCTGATGATACGGGCCCCGTGCACGTGCCTT AAAGAACCCCCCTGATGATACGGGACCCGTGCACGTGCCTT < 41bp 0.652498332638048 0.911979781743445 0.38322794 0.48684645 prediction 0.518962898210795 Functional Gain - FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33464128 chr19:33464132 synonymous SNV . 0 25 hm5C_associated_SNPs_106602 0 0 1 0 2 FAAP24 chr19:33464090 3'AG 33464090 Downstream 43bp
chr19 33464132 33464132 1 + C A PRAD 33464128 + 33464108 33464148 41 AAAGAACCCCCCTGATGATACGGGCCCCGTGCACGTGCCTT AAAGAACCCCCCTGATGATACGGGACCCGTGCACGTGCCTT < 41bp 0.652498332638048 0.911979781743445 0.38322794 0.48684645 prediction 0.518962898210795 Functional Gain - FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33464128 chr19:33464132 synonymous SNV . 0 25 hm5C_associated_SNPs_106602 0 0 1 0 2 FAAP24 chr19:33464208 5'GT 33464208 Upstream 77bp
chrX 47102986 47102986 1 + T C LIHC 47102984 + 47102964 47103004 41 TGGGAGGGCCTGTATAACGTCCTGATGTACCGGCTCTCGTA TGGGAGGGCCTGTATAACGTCCCGATGTACCGGCTCTCGTA < 41bp 0.54104408896489 0.800508509990524 0.33293042 0.35294527 prediction 0.518928842051269 Functional Gain - USP11 ENSG00000102226 CDS Human protein_coding chrX:47102984 chrX:47102986 nonsynonymous SNV 0.423 1 23 hm5C_associated_SNPs_106603 0 0 1 0 1 USP11 chrX:47103001 5'GT 47103001 Upstream 16bp
chr2 171572790 171572790 1 + C A SKCM 171572786 + 171572766 171572806 41 CAGGACCGCACCCCCAGCGCCTCCCCGGACCTGGGCAAGCA CAGGACCGCACCCCCAGCGCCTCCACGGACCTGGGCAAGCA < 41bp 0.343539775471434 0.759459127288616 0.12578598 0.9654692 prediction 0.518918254577232 Functional Gain - SP5 ENSG00000204335 CDS Human protein_coding chr2:171572786 chr2:171572790 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_106604 0 0 1 0 1 SP5 chr2:171572769 3'AG 171572769 Downstream 22bp
chr4 3487294 3487294 1 + C G LUAD 3487290 + 3487270 3487310 41 TGGCGTCTTCTTCCTGTCCTCGGCCGAGGGGGAGCAGATCA TGGCGTCTTCTTCCTGTCCTCGGCGGAGGGGGAGCAGATCA < 41bp 0.558248494998513 0.817701433960111 0.6158273 0.9000356 prediction 0.518905877923196 Functional Gain - DOK7 ENSG00000175920 CDS Human protein_coding chr4:3487290 chr4:3487294 nonsynonymous SNV 0.174 1 25 hm5C_associated_SNPs_106607 0 0 0 0 2 DOK7 chr4:3487266 3'AG 3487266 Downstream 29bp
chr4 3487294 3487294 1 + C G LUAD 3487290 + 3487270 3487310 41 TGGCGTCTTCTTCCTGTCCTCGGCCGAGGGGGAGCAGATCA TGGCGTCTTCTTCCTGTCCTCGGCGGAGGGGGAGCAGATCA < 41bp 0.558248494998513 0.817701433960111 0.6158273 0.9000356 prediction 0.518905877923196 Functional Gain - DOK7 ENSG00000175920 CDS Human protein_coding chr4:3487290 chr4:3487294 nonsynonymous SNV 0.174 1 25 hm5C_associated_SNPs_106607 0 0 0 0 2 DOK7 chr4:3487385 5'GT 3487385 Upstream 92bp
chr4 2632748 2632748 1 + T A KIRP 2632744 + 2632724 2632764 41 TGCTGGAGATGAAGGTCCGCCTGCTCCGGCAGCTGTCGGCT TGCTGGAGATGAAGGTCCGCCTGCACCGGCAGCTGTCGGCT < 41bp 0.421196368261975 0.759452149649226 0.41172013 0.20962995 prediction 0.518904299298453 Functional Gain - FAM193A ENSG00000125386 CDS Human protein_coding chr4:2632744 chr4:2632748 nonsynonymous SNV 0.980 4 25 hm5C_associated_SNPs_106609 0 0 1 0 1 FAM193A chr4:2632662 3'AG 2632662 Downstream 87bp
chr16 88052124 88052124 1 + T C SKCM 88052122 + 88052102 88052142 41 ATCCCCTCCGACATGCTGCACATCAGCACCAACTGCCGCAC ATCCCCTCCGACATGCTGCACACCAGCACCAACTGCCGCAC < 41bp 0.483497568430803 0.759446079056779 0.029457927 0.023201764 prediction 0.518892158113558 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88052122 chr16:88052124 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_106610 0 0 0 0 1 BANP chr16:88052034 3'AG 88052034 Downstream 91bp
chr17 61556390 61556390 1 + T C UCEC 61556388 + 61556368 61556408 41 TACAACGCCCTGCTAAGCAACATGAGCAGGATCTACTCCAC TACAACGCCCTGCTAAGCAACACGAGCAGGATCTACTCCAC < 41bp 0.495166594403184 0.759433669198981 0.2510379 0.24796167 prediction 0.518867338397962 Functional Gain - ACE ENSG00000159640 CDS Human protein_coding chr17:61556388 chr17:61556390 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_106611 0 0 0 0 2 ACE chr17:61556368 3'AG 61556368 Downstream 23bp
chr17 61556390 61556390 1 + T C UCEC 61556388 + 61556368 61556408 41 TACAACGCCCTGCTAAGCAACATGAGCAGGATCTACTCCAC TACAACGCCCTGCTAAGCAACACGAGCAGGATCTACTCCAC < 41bp 0.495166594403184 0.759433669198981 0.2510379 0.24796167 prediction 0.518867338397962 Functional Gain - ACE ENSG00000159640 CDS Human protein_coding chr17:61556388 chr17:61556390 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_106611 0 0 0 0 2 ACE chr17:61556461 5'GT 61556461 Upstream 72bp
chr4 71255429 71255429 1 + T A LUAD 71255425 + 71255405 71255445 41 GGGGACCATATCCACCTGGACCGCTGGCTCCTCCTCAACCT GGGGACCATATCCACCTGGACCGCAGGCTCCTCCTCAACCT < 41bp 0.455388197141628 0.759415930272233 0.13113606 0.17970076 prediction 0.518831860544465 Functional Gain - SMR3B ENSG00000171201 CDS Human protein_coding chr4:71255425 chr4:71255429 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_106613 0 0 0 0 1 SMR3B chr4:71255380 3'AG 71255380 Downstream 50bp
chr6 170190418 170190418 1 + T G rs3823467 170190416 + 170190396 170190436 41 CGGGGCACGGGGTGGCGCTCCCTGGTAAAGCAGCGGCCAGG CGGGGCACGGGGTGGCGCTCCCGGGTAAAGCAGCGGCCAGG < 41bp 0.415951216781316 0.759393629637816 0.17387664 0.91023684 prediction 0.518787259275632 Functional Gain - LINC00242;LINC00574 ENSG00000229214;ENSG00000231690 ncRNA_exonic Human other chr6:170190416 chr6:170190418 . . 0 23 hm5C_associated_SNPs_106614 0 0 0 0 1 LINC00242;LINC00574 chr6:170190512 5'GT 170190512 Upstream 95bp
chr16 74419267 74419267 1 + T A SKCM 74419263 + 74419243 74419283 41 TCTTTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGA TCTTTCCTGAAGACTATCTTCTGGACTCGAAATGGACATGA < 41bp 0.585971073307549 0.845362916815436 0.030722082 0.17459759 prediction 0.518783687015775 Functional Gain - NPIPB15 ENSG00000196436 CDS Human protein_coding chr16:74419263 chr16:74419267 nonsynonymous SNV 0.003 3 25 hm5C_associated_SNPs_106615 0 0 0 0 2 NPIPB15 chr16:74419240 3'AG 74419240 Downstream 28bp
chr16 74419267 74419267 1 + T A SKCM 74419263 + 74419243 74419283 41 TCTTTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGA TCTTTCCTGAAGACTATCTTCTGGACTCGAAATGGACATGA < 41bp 0.585971073307549 0.845362916815436 0.030722082 0.17459759 prediction 0.518783687015775 Functional Gain - NPIPB15 ENSG00000196436 CDS Human protein_coding chr16:74419263 chr16:74419267 nonsynonymous SNV 0.003 3 25 hm5C_associated_SNPs_106615 0 0 0 0 2 NPIPB15 chr16:74419339 5'GT 74419339 Upstream 73bp
chr16 21964769 21964769 1 + T A ESCA 21964765 + 21964745 21964785 41 ATGAAGCTACTAACCAGAGCCGGCTCTTTCTCGGTGAGCTC ATGAAGCTACTAACCAGAGCCGGCACTTTCTCGGTGAGCTC < 41bp 0.466360492880033 0.759383246780865 0.07531485 0.08687839 prediction 0.51876649356173 Functional Gain - UQCRC2 ENSG00000140740 CDS Human protein_coding chr16:21964765 chr16:21964769 nonsynonymous SNV 0.869 0 25 hm5C_associated_SNPs_106616 0 0 1 0 1 UQCRC2 chr16:21964777 5'GT 21964777 Upstream 9bp
chr17 4905377 4905377 1 + C A rs138692366 4905373 + 4905353 4905393 41 GCTCTGTGAGGACCTCTTCTCTCGCGTTAGTGAGAACCAGA GCTCTGTGAGGACCTCTTCTCTCGAGTTAGTGAGAACCAGA < 41bp 0.34415493949698 0.759363750704032 0.17653209 0.38144347 prediction 0.518727501408065 Functional Gain - KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905373 chr17:4905377 synonymous SNV . 0 25 hm5C_associated_SNPs_106617 0 0 1 0 2 KIF1C chr17:4905354 3'AG 4905354 Downstream 24bp
chr17 4905377 4905377 1 + C A rs138692366 4905373 + 4905353 4905393 41 GCTCTGTGAGGACCTCTTCTCTCGCGTTAGTGAGAACCAGA GCTCTGTGAGGACCTCTTCTCTCGAGTTAGTGAGAACCAGA < 41bp 0.34415493949698 0.759363750704032 0.17653209 0.38144347 prediction 0.518727501408065 Functional Gain - KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905373 chr17:4905377 synonymous SNV . 0 25 hm5C_associated_SNPs_106617 0 0 1 0 2 KIF1C chr17:4905419 5'GT 4905419 Upstream 43bp
chr14 23848709 23848709 1 + C G rs139534097 23848708 + 23848688 23848728 41 CAGCAGTGACTCTGGGGCTACCTGGCTCCTAGGCCCAGCCA CAGCAGTGACTCTGGGGCTACGTGGCTCCTAGGCCCAGCCA < 41bp 0.565877353993425 0.825224936645328 0.75168395 0.9143727 prediction 0.518695165303807 Functional Gain - CMTM5 ENSG00000166091 UTR3 Human protein_coding chr14:23848708 chr14:23848709 . . 0 22 hm5C_associated_SNPs_106621 0 0 0 0 1 CMTM5 chr14:23848683 3'AG 23848683 Downstream 27bp
chr8 77690538 77690538 1 + T A LUSC 77690534 + 77690514 77690554 41 CCACCAAGGTCAAGTTGAATCTGGTACAACATGTCCGTTCG CCACCAAGGTCAAGTTGAATCTGGAACAACATGTCCGTTCG < 41bp 0.454187984191857 0.759346988605016 0.49844778 0.807945 prediction 0.518693977210032 Functional Gain - ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77690534 chr8:77690538 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_106623 0 0 1 0 1 ZFHX4 chr8:77690444 3'AG 77690444 Downstream 95bp
chr10 72633215 72633215 1 + C T DLBC 72633214 + 72633194 72633234 41 GCAGGGTGGCATCTATGCTTCCCCAACCATCGCAGGCTCAC GCAGGGTGGCATCTATGCTTCTCCAACCATCGCAGGCTCAC < 41bp 0.53541484336432 0.794760135440735 0.111769885 0.9184272 prediction 0.51869058415283 Functional Gain - SGPL1 ENSG00000166224 CDS Human protein_coding chr10:72633214 chr10:72633215 synonymous SNV . 0 22 hm5C_associated_SNPs_106624 0 0 1 0 1 SGPL1 chr10:72633282 5'GT 72633282 Upstream 68bp
chr18 67365760 67365760 1 + T A LUAD 67365756 + 67365736 67365776 41 TCCACAATGCCAAGGTCAAACTGGTGATGTGGCCTCTCAGC TCCACAATGCCAAGGTCAAACTGGAGATGTGGCCTCTCAGC < 41bp 0.584143212030228 0.84346532949292 0.21025991 0.2118586 prediction 0.518644234925383 Functional Gain - DOK6 ENSG00000206052 CDS Human protein_coding chr18:67365756 chr18:67365760 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_106628 0 0 0 0 1 DOK6 chr18:67365829 5'GT 67365829 Upstream 70bp
chr20 34287591 34287591 1 + C A STAD 34287587 + 34287567 34287607 41 GTGGGTCCCTACGGACAGTCCCAGCCAAGCTGCTTCGACCG GTGGGTCCCTACGGACAGTCCCAGACAAGCTGCTTCGACCG < 41bp 0.370304261029036 0.759290543594109 0.05565837 0.09661493 prediction 0.518581087188217 Functional Gain - ROMO1 ENSG00000125995 CDS Human protein_coding chr20:34287587 chr20:34287591 nonsynonymous SNV 0.990 3 25 hm5C_associated_SNPs_106630 0 0 1 0 2 ROMO1 chr20:34287555 3'AG 34287555 Downstream 37bp
chr20 34287591 34287591 1 + C A STAD 34287587 + 34287567 34287607 41 GTGGGTCCCTACGGACAGTCCCAGCCAAGCTGCTTCGACCG GTGGGTCCCTACGGACAGTCCCAGACAAGCTGCTTCGACCG < 41bp 0.370304261029036 0.759290543594109 0.05565837 0.09661493 prediction 0.518581087188217 Functional Gain - ROMO1 ENSG00000125995 CDS Human protein_coding chr20:34287587 chr20:34287591 nonsynonymous SNV 0.990 3 25 hm5C_associated_SNPs_106630 0 0 1 0 2 ROMO1 chr20:34287685 5'GT 34287685 Upstream 95bp
chr16 69964118 69964118 1 + C T STAD 69964117 + 69964097 69964137 41 TACTTTGTGGACCACAATACCCGCACCACCACCTTTAAGGA TACTTTGTGGACCACAATACCTGCACCACCACCTTTAAGGA < 41bp 0.502199685396534 0.761486279464804 0.088291734 0.0817655 prediction 0.518573188136539 Functional Gain - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69964117 chr16:69964118 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_106631 0 0 0 0 2 WWP2 chr16:69964033 3'AG 69964033 Downstream 86bp
chr16 69964118 69964118 1 + C T STAD 69964117 + 69964097 69964137 41 TACTTTGTGGACCACAATACCCGCACCACCACCTTTAAGGA TACTTTGTGGACCACAATACCTGCACCACCACCTTTAAGGA < 41bp 0.502199685396534 0.761486279464804 0.088291734 0.0817655 prediction 0.518573188136539 Functional Gain - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69964117 chr16:69964118 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_106631 0 0 0 0 2 WWP2 chr16:69964161 5'GT 69964161 Upstream 44bp
chr12 549866 549866 1 + C T SKCM 549865 + 549845 549885 41 TTCCTTAGAAGAAGAACTTGCCCGAATTCGTGAGGAAGAGG TTCCTTAGAAGAAGAACTTGCTCGAATTCGTGAGGAAGAGG < 41bp 0.507486218384751 0.766764455847938 0.063530475 0.21104962 prediction 0.518556474926373 Functional Gain - CCDC77 ENSG00000120647 CDS Human protein_coding chr12:549865 chr12:549866 synonymous SNV . 0 22 hm5C_associated_SNPs_106632 0 0 1 0 2 CCDC77 chr12:549783 3'AG 549783 Downstream 84bp
chr12 549866 549866 1 + C T SKCM 549865 + 549845 549885 41 TTCCTTAGAAGAAGAACTTGCCCGAATTCGTGAGGAAGAGG TTCCTTAGAAGAAGAACTTGCTCGAATTCGTGAGGAAGAGG < 41bp 0.507486218384751 0.766764455847938 0.063530475 0.21104962 prediction 0.518556474926373 Functional Gain - CCDC77 ENSG00000120647 CDS Human protein_coding chr12:549865 chr12:549866 synonymous SNV . 0 22 hm5C_associated_SNPs_106632 0 0 1 0 2 CCDC77 chr12:549908 5'GT 549908 Upstream 43bp
chr8 38854660 38854660 1 + C A rs148707472 38854656 + 38854636 38854676 41 GTTGCTTGGCCTGGTGGGCCCAGTCCTCGGTGCGGCGCGGC GTTGCTTGGCCTGGTGGGCCCAGTACTCGGTGCGGCGCGGC < 41bp 0.635514246080476 0.894788574826146 0.48233104 0.8330982 prediction 0.51854865749134 Functional Gain - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38854656 chr8:38854660 synonymous SNV . 0 25 hm5C_associated_SNPs_106633 2 0 1 0 1 ADAM9 chr8:38854679 5'GT 38854679 Upstream 20bp
chr16 55705990 55705990 1 + C T UCEC 55705989 + 55705969 55706009 41 TGTGGCCACACCTGGAACAGCCCCAACTGTACCGACCCCAA TGTGGCCACACCTGGAACAGCTCCAACTGTACCGACCCCAA < 41bp 0.487318178064893 0.759271675119428 0.18440023 0.8480065 prediction 0.518543350238856 Functional Gain - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55705989 chr16:55705990 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_106634 0 0 0 0 1 SLC6A2 chr16:55706087 5'GT 55706087 Upstream 98bp
chr9 133333935 133333935 1 + C A rs143405567 133333931 + 133333911 133333951 41 CGCAAACAAGTGGAAATCGCCCAGCGGGAGGGGGCCAAGTA CGCAAACAAGTGGAAATCGCCCAGAGGGAGGGGGCCAAGTA < 41bp 0.34914633291681 0.759255734439451 0.24658948 0.18005529 prediction 0.518511468878903 Functional Gain - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133333931 chr9:133333935 synonymous SNV . 0 25 hm5C_associated_SNPs_106636 0 0 1 0 1 ASS1 chr9:133333976 5'GT 133333976 Upstream 42bp
chr14 65054947 65054947 1 + T A rs149477152 65054943 + 65054923 65054963 41 TCTTTGAGAAAAAGTATCATCAAGTAGACGTCAGATTCCCA TCTTTGAGAAAAAGTATCATCAAGAAGACGTCAGATTCCCA < 41bp 0.591312194673447 0.850566015258668 0.05121243 0.0860405 prediction 0.518507641170443 Functional Gain - PPP1R36 ENSG00000165807 CDS Human protein_coding chr14:65054943 chr14:65054947 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_106637 0 0 0 0 1 PPP1R36 chr14:65055013 5'GT 65055013 Upstream 67bp
chr3 147130317 147130317 1 + T G LUSC 147130315 + 147130295 147130335 41 TTGGCACCAGGGGAGAAGCCCTTCAAGTGCGAGTTTGAGGG TTGGCACCAGGGGAGAAGCCCTGCAAGTGCGAGTTTGAGGG < 41bp 0.419999178823599 0.759253552269055 0.458453 0.23487133 prediction 0.51850710453811 Functional Gain - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147130315 chr3:147130317 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106638 0 0 0 0 1 ZIC1 chr3:147130305 3'AG 147130305 Downstream 13bp
chr19 38817261 38817261 1 + T A LIHC 38817257 + 38817237 38817277 41 TGGGTACACAACGCCACTGACTGATGCGGGCAAGGCCTTCT TGGGTACACAACGCCACTGACTGAAGCGGGCAAGGCCTTCT < 41bp 0.423837543460788 0.759248051508418 0.10643089 0.46787965 prediction 0.518496103016837 Functional Gain - KCNK6 ENSG00000099337 CDS Human protein_coding chr19:38817257 chr19:38817261 nonsynonymous SNV 0.261 1 25 hm5C_associated_SNPs_106640 0 0 0 0 1 KCNK6 chr19:38817233 3'AG 38817233 Downstream 29bp
chr6 44390536 44390536 1 + T C UCEC 44390534 + 44390514 44390554 41 GACTATAGTGATCCCTCTTACGTGAAGCAGATGGTAAATGT GACTATAGTGATCCCTCTTACGCGAAGCAGATGGTAAATGT < 41bp 0.544584372192841 0.803794127879114 0.7848981 0.85824347 prediction 0.518419511372548 Functional Gain - CDC5L ENSG00000096401 CDS Human protein_coding chr6:44390534 chr6:44390536 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_106643 0 0 1 0 1 CDC5L chr6:44390546 5'GT 44390546 Upstream 11bp
chr19 17970751 17970751 1 + C A rs549094579 17970747 + 17970727 17970767 41 CTTCCTTTTGCGGGTGGCGGCGAACGCGGAGAGCACGCCAT CTTCCTTTTGCGGGTGGCGGCGAAAGCGGAGAGCACGCCAT < 41bp 0.535131637877408 0.794337929228867 0.86506975 0.8992958 prediction 0.518412582702919 Functional Gain - RPL18A ENSG00000105640 UTR5 Human protein_coding chr19:17970747 chr19:17970751 . . 0 25 hm5C_associated_SNPs_106645 0 0 1 0 1 RPL18A chr19:17970783 5'GT 17970783 Upstream 33bp
chr5 131728258 131728258 1 + C T SKCM 131728257 + 131728237 131728277 41 CATGGGTGTGGGAGTCAGCTCCACAGCATCCCGCCTGGGCA CATGGGTGTGGGAGTCAGCTCTACAGCATCCCGCCTGGGCA < 41bp 0.510503711891556 0.769683531134843 0.31363663 0.75953364 prediction 0.518359638486574 Functional Gain - SLC22A5 ENSG00000197375 CDS Human protein_coding chr5:131728257 chr5:131728258 synonymous SNV . 0 22 hm5C_associated_SNPs_106649 0 0 1 0 1 SLC22A5 chr5:131728307 5'GT 131728307 Upstream 50bp
chr16 681342 681342 1 + C A rs80030357 681338 + 681318 681358 41 TGCTGCCAGGGCTGGGGAGCCACCCGGGCGTGTGCCCCAAC TGCTGCCAGGGCTGGGGAGCCACCAGGGCGTGTGCCCCAAC < 41bp 0.653223365710371 0.912401055959426 0.44350672 0.87846184 prediction 0.51835538049811 Functional Gain - WFIKKN1 ENSG00000127578 CDS Human protein_coding chr16:681338 chr16:681342 nonsynonymous SNV 0.050 0 25 hm5C_associated_SNPs_106651 0 0 1 0 1 WFIKKN1 chr16:681424 5'GT 681424 Upstream 83bp
chr9 101812001 101812001 1 + C A rs141775032 101811997 + 101811977 101812017 41 ACCTGGCTTACCTGGCCCTCCAGGCCCCCCTGGGCCACCTG ACCTGGCTTACCTGGCCCTCCAGGACCCCCTGGGCCACCTG < 41bp 0.354321117609817 0.759169705008442 0.8665203 0.69373775 prediction 0.518339410016885 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101811997 chr9:101812001 synonymous SNV . 0 25 hm5C_associated_SNPs_106652 0 0 0 0 2 COL15A1 chr9:101811972 3'AG 101811972 Downstream 30bp
chr9 101812001 101812001 1 + C A rs141775032 101811997 + 101811977 101812017 41 ACCTGGCTTACCTGGCCCTCCAGGCCCCCCTGGGCCACCTG ACCTGGCTTACCTGGCCCTCCAGGACCCCCTGGGCCACCTG < 41bp 0.354321117609817 0.759169705008442 0.8665203 0.69373775 prediction 0.518339410016885 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101811997 chr9:101812001 synonymous SNV . 0 25 hm5C_associated_SNPs_106652 0 0 0 0 2 COL15A1 chr9:101812040 5'GT 101812040 Upstream 40bp
chr12 121154503 121154503 1 + T A BRCA 121154499 + 121154479 121154519 41 CAGGACGTTTTGTCCGCTATCAGTTCACACCGGCATTTCTC CAGGACGTTTTGTCCGCTATCAGTACACACCGGCATTTCTC < 41bp 0.439397680057477 0.759165255245873 0.27015334 0.36914718 prediction 0.518330510491747 Functional Gain - UNC119B ENSG00000175970 CDS Human protein_coding chr12:121154499 chr12:121154503 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_106654 0 0 1 0 2 UNC119B chr12:121154431 3'AG 121154431 Downstream 73bp
chr12 121154503 121154503 1 + T A BRCA 121154499 + 121154479 121154519 41 CAGGACGTTTTGTCCGCTATCAGTTCACACCGGCATTTCTC CAGGACGTTTTGTCCGCTATCAGTACACACCGGCATTTCTC < 41bp 0.439397680057477 0.759165255245873 0.27015334 0.36914718 prediction 0.518330510491747 Functional Gain - UNC119B ENSG00000175970 CDS Human protein_coding chr12:121154499 chr12:121154503 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_106654 0 0 1 0 2 UNC119B chr12:121154542 5'GT 121154542 Upstream 40bp
chr16 23569566 23569566 1 + C A UCEC 23569562 + 23569542 23569582 41 GAAGTTCCCCCTGGACAGCACAGGCTCCGAGCTGAAACAGA GAAGTTCCCCCTGGACAGCACAGGATCCGAGCTGAAACAGA < 41bp 0.353684635702602 0.759159896739219 0.18013453 0.2945848 prediction 0.518319793478437 Functional Gain - UBFD1 ENSG00000103353 CDS Human protein_coding chr16:23569562 chr16:23569566 synonymous SNV . 0 25 hm5C_associated_SNPs_106655 0 0 1 0 1 UBFD1 chr16:23569600 5'GT 23569600 Upstream 35bp
chr1 11884570 11884570 1 + T C SKCM 11884568 + 11884548 11884588 41 TTCGTGGAGAAGGAAGGCCCCATGATCCACAGTGGTTCGGT TTCGTGGAGAAGGAAGGCCCCACGATCCACAGTGGTTCGGT < 41bp 0.541244171234135 0.800392391010946 0.39278996 0.6323904 prediction 0.518296439553621 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11884568 chr1:11884570 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_106656 0 0 1 0 2 CLCN6 chr1:11884543 3'AG 11884543 Downstream 28bp
chr1 11884570 11884570 1 + T C SKCM 11884568 + 11884548 11884588 41 TTCGTGGAGAAGGAAGGCCCCATGATCCACAGTGGTTCGGT TTCGTGGAGAAGGAAGGCCCCACGATCCACAGTGGTTCGGT < 41bp 0.541244171234135 0.800392391010946 0.39278996 0.6323904 prediction 0.518296439553621 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11884568 chr1:11884570 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_106656 0 0 1 0 2 CLCN6 chr1:11884610 5'GT 11884610 Upstream 41bp
chr1 155719387 155719387 1 + C G rs554458598 155719386 + 155719366 155719406 41 TCTTCTCAAGCTGCAGTCCACCGGGTATGGTTCTGGATGGT TCTTCTCAAGCTGCAGTCCACGGGGTATGGTTCTGGATGGT < 41bp 0.593460800273281 0.852600740994742 0.4447679 0.9180327 prediction 0.518279881442921 Functional Gain - MSTO2P ENSG00000203761 ncRNA_exonic Human unprocessed_pseudogene chr1:155719386 chr1:155719387 . . 0 22 hm5C_associated_SNPs_106657 0 0 0 0 2 MSTO2P chr1:155719313 3'AG 155719313 Downstream 75bp
chr1 155719387 155719387 1 + C G rs554458598 155719386 + 155719366 155719406 41 TCTTCTCAAGCTGCAGTCCACCGGGTATGGTTCTGGATGGT TCTTCTCAAGCTGCAGTCCACGGGGTATGGTTCTGGATGGT < 41bp 0.593460800273281 0.852600740994742 0.4447679 0.9180327 prediction 0.518279881442921 Functional Gain - MSTO2P ENSG00000203761 ncRNA_exonic Human unprocessed_pseudogene chr1:155719386 chr1:155719387 . . 0 22 hm5C_associated_SNPs_106657 0 0 0 0 2 MSTO2P chr1:155719422 5'GT 155719422 Upstream 36bp
chr1 28206557 28206557 1 + T C PAAD 28206555 + 28206535 28206575 41 CCCCAGTATGAGATCCAAGCCATCATGCACAGTGAGTTGCC CCCCAGTATGAGATCCAAGCCACCATGCACAGTGAGTTGCC < 41bp 0.494085781862919 0.759106208681936 0.09295541 0.055122435 prediction 0.518212417363873 Functional Gain - THEMIS2 ENSG00000130775 CDS Human protein_coding chr1:28206555 chr1:28206557 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_106663 0 0 0 0 1 THEMIS2 chr1:28206565 5'GT 28206565 Upstream 9bp
chr20 44567730 44567730 1 + C G HNSC 44567729 + 44567709 44567749 41 ATCAGAGCCAGCCCTGTTCTCCAAAGCCAATCCGCCTGGTT ATCAGAGCCAGCCCTGTTCTCGAAAGCCAATCCGCCTGGTT < 41bp 0.594059592375726 0.853160150353443 0.59271693 0.9192686 prediction 0.518201115955434 Functional Gain - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44567729 chr20:44567730 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_106664 0 0 1 0 1 PCIF1 chr20:44567762 5'GT 44567762 Upstream 33bp
chr12 133197653 133197653 1 + C T COAD 133197652 + 133197632 133197672 41 CTGCCTGCATCGGAGTGCAACCCCAAGTACTCCTTCCGGAG CTGCCTGCATCGGAGTGCAACTCCAAGTACTCCTTCCGGAG < 41bp 0.492046143571387 0.75908515669642 0.5161412 0.96065867 prediction 0.51817031339284 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133197652 chr12:133197653 nonsynonymous SNV 0.950 4 22 hm5C_associated_SNPs_106667 0 0 0 0 1 P2RX2 chr12:133197717 5'GT 133197717 Upstream 65bp
chr21 47321005 47321005 1 + T C STAD 47321003 + 47320983 47321023 41 GCCATCTTCAAGGCCTTTGCCATGATCGCATACAAGTTTGA GCCATCTTCAAGGCCTTTGCCACGATCGCATACAAGTTTGA < 41bp 0.477431882140076 0.759082191101893 0.31692624 0.36341372 prediction 0.518164382203785 Functional Gain - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47321003 chr21:47321005 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_106668 0 0 0 0 1 PCBP3 chr21:47321027 5'GT 47321027 Upstream 23bp
chr5 72286600 72286600 1 + C A COAD 72286596 + 72286576 72286616 41 AAACCATTCAGAGCATAACTCAGGCCCTCCAGAAATCCAAG AAACCATTCAGAGCATAACTCAGGACCTCCAGAAATCCAAG < 41bp 0.361735919465611 0.759043057187626 0.88375086 0.6843527 prediction 0.518086114375251 Functional Gain - FCHO2 ENSG00000157107 CDS Human protein_coding chr5:72286596 chr5:72286600 nonsynonymous SNV 0.974 3 25 hm5C_associated_SNPs_106675 0 0 1 0 2 FCHO2 chr5:72286539 3'AG 72286539 Downstream 62bp
chr5 72286600 72286600 1 + C A COAD 72286596 + 72286576 72286616 41 AAACCATTCAGAGCATAACTCAGGCCCTCCAGAAATCCAAG AAACCATTCAGAGCATAACTCAGGACCTCCAGAAATCCAAG < 41bp 0.361735919465611 0.759043057187626 0.88375086 0.6843527 prediction 0.518086114375251 Functional Gain - FCHO2 ENSG00000157107 CDS Human protein_coding chr5:72286596 chr5:72286600 nonsynonymous SNV 0.974 3 25 hm5C_associated_SNPs_106675 0 0 1 0 2 FCHO2 chr5:72286691 5'GT 72286691 Upstream 92bp
chr10 124273730 124273730 1 + T C UCEC 124273728 + 124273708 124273748 41 GGTGGTCTCAAGGAAAACGACGTCATAATCAGCATCAATGG GGTGGTCTCAAGGAAAACGACGCCATAATCAGCATCAATGG < 41bp 0.521877482562771 0.780916705992589 0.02328369 0.092250764 prediction 0.518078446859637 Functional Gain - HTRA1 ENSG00000166033 CDS Human protein_coding chr10:124273728 chr10:124273730 nonsynonymous SNV 0.922 4 23 hm5C_associated_SNPs_106676 0 0 0 0 1 HTRA1 chr10:124273707 3'AG 124273707 Downstream 24bp
chr14 24844908 24844908 1 + T A LIHC 24844904 + 24844884 24844924 41 AGGAGGAGGCCACAGTGAACCGACTGCAGAGCAACGAGGTA AGGAGGAGGCCACAGTGAACCGACAGCAGAGCAACGAGGTA < 41bp 0.535787136979334 0.794824069124849 0.38236737 0.19373918 prediction 0.518073864291029 Functional Gain - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24844904 chr14:24844908 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_106678 0 0 0 0 2 NFATC4 chr14:24844866 3'AG 24844866 Downstream 43bp
chr14 24844908 24844908 1 + T A LIHC 24844904 + 24844884 24844924 41 AGGAGGAGGCCACAGTGAACCGACTGCAGAGCAACGAGGTA AGGAGGAGGCCACAGTGAACCGACAGCAGAGCAACGAGGTA < 41bp 0.535787136979334 0.794824069124849 0.38236737 0.19373918 prediction 0.518073864291029 Functional Gain - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24844904 chr14:24844908 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_106678 0 0 0 0 2 NFATC4 chr14:24844921 5'GT 24844921 Upstream 14bp
chr6 147680410 147680410 1 + C T UCEC 147680409 + 147680389 147680429 41 TGTCATTGCACTGAACCTTCCCCCAGGGGGAGAGCAAAGAC TGTCATTGCACTGAACCTTCCTCCAGGGGGAGAGCAAAGAC < 41bp 0.481905517059608 0.759029457716355 0.06255856 0.93498266 prediction 0.51805891543271 Functional Gain - STXBP5 ENSG00000164506 CDS Human protein_coding chr6:147680409 chr6:147680410 synonymous SNV . 0 22 hm5C_associated_SNPs_106681 0 0 1 0 1 STXBP5 chr6:147680459 5'GT 147680459 Upstream 50bp
chr11 7535337 7535337 1 + T G rs76560573 7535335 + 7535315 7535355 41 CTGAGCCGCCCGGAGAGGAGCCTCGGCCCCGTACCCAGGTC CTGAGCCGCCCGGAGAGGAGCCGCGGCCCCGTACCCAGGTC < 41bp 0.41152599302119 0.75900518963224 0.44387925 0.5691589 prediction 0.518010379264479 Functional Gain - PPFIBP2 ENSG00000166387 UTR5 Human protein_coding chr11:7535335 chr11:7535337 . . 0 23 hm5C_associated_SNPs_106688 0 0 0 0 1 PPFIBP2 chr11:7535352 5'GT 7535352 Upstream 16bp
chr17 55075815 55075815 1 + T C DLBC 55075813 + 55075793 55075833 41 AGCCAGCTCATGAATGGCCCCATCAGAAAGAAGCTCAAAAT AGCCAGCTCATGAATGGCCCCACCAGAAAGAAGCTCAAAAT < 41bp 0.476619735851119 0.758970262870852 0.007440537 0.013214856 prediction 0.517940525741704 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55075813 chr17:55075815 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_106690 0 0 0 0 3 SCPEP1 chr17:55075735 3'AG 55075735 Downstream 81bp
chr17 55075815 55075815 1 + T C DLBC 55075813 + 55075793 55075833 41 AGCCAGCTCATGAATGGCCCCATCAGAAAGAAGCTCAAAAT AGCCAGCTCATGAATGGCCCCACCAGAAAGAAGCTCAAAAT < 41bp 0.476619735851119 0.758970262870852 0.007440537 0.013214856 prediction 0.517940525741704 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55075813 chr17:55075815 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_106690 0 0 0 0 3 SCPEP1 chr17:55075746 3'AG 55075746 Downstream 70bp
chr17 55075815 55075815 1 + T C DLBC 55075813 + 55075793 55075833 41 AGCCAGCTCATGAATGGCCCCATCAGAAAGAAGCTCAAAAT AGCCAGCTCATGAATGGCCCCACCAGAAAGAAGCTCAAAAT < 41bp 0.476619735851119 0.758970262870852 0.007440537 0.013214856 prediction 0.517940525741704 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55075813 chr17:55075815 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_106690 0 0 0 0 3 SCPEP1 chr17:55075859 5'GT 55075859 Upstream 45bp
chr16 55563839 55563839 1 + T C UCEC 55563837 + 55563817 55563857 41 TGAAATAATAAAGCGAACAACATCAGGAGGAGAATGGCCCC TGAAATAATAAAGCGAACAACACCAGGAGGAGAATGGCCCC < 41bp 0.475240160100309 0.7589699844726 0.3046679 0.585406 prediction 0.517939968945199 Functional Gain - LPCAT2 ENSG00000087253 CDS Human protein_coding chr16:55563837 chr16:55563839 nonsynonymous SNV 0.829 3 23 hm5C_associated_SNPs_106691 0 0 0 0 2 LPCAT2 chr16:55563747 3'AG 55563747 Downstream 93bp
chr16 55563839 55563839 1 + T C UCEC 55563837 + 55563817 55563857 41 TGAAATAATAAAGCGAACAACATCAGGAGGAGAATGGCCCC TGAAATAATAAAGCGAACAACACCAGGAGGAGAATGGCCCC < 41bp 0.475240160100309 0.7589699844726 0.3046679 0.585406 prediction 0.517939968945199 Functional Gain - LPCAT2 ENSG00000087253 CDS Human protein_coding chr16:55563837 chr16:55563839 nonsynonymous SNV 0.829 3 23 hm5C_associated_SNPs_106691 0 0 0 0 2 LPCAT2 chr16:55563859 5'GT 55563859 Upstream 21bp
chr1 204091106 204091106 1 + C A STAD 204091102 + 204091082 204091122 41 CTGGGGCCATGGCCACCCACCACCCCCTGCAGGTACCGCCC CTGGGGCCATGGCCACCCACCACCACCTGCAGGTACCGCCC < 41bp 0.328095151853001 0.758966157954722 0.20884672 0.17823923 prediction 0.517932315909443 Functional Gain - SOX13 ENSG00000143842 CDS Human protein_coding chr1:204091102 chr1:204091106 nonsynonymous SNV 0.974 3 25 hm5C_associated_SNPs_106692 0 0 1 0 2 SOX13 chr1:204091028 3'AG 204091028 Downstream 79bp
chr1 204091106 204091106 1 + C A STAD 204091102 + 204091082 204091122 41 CTGGGGCCATGGCCACCCACCACCCCCTGCAGGTACCGCCC CTGGGGCCATGGCCACCCACCACCACCTGCAGGTACCGCCC < 41bp 0.328095151853001 0.758966157954722 0.20884672 0.17823923 prediction 0.517932315909443 Functional Gain - SOX13 ENSG00000143842 CDS Human protein_coding chr1:204091102 chr1:204091106 nonsynonymous SNV 0.974 3 25 hm5C_associated_SNPs_106692 0 0 1 0 2 SOX13 chr1:204091113 5'GT 204091113 Upstream 8bp
chr6 54735391 54735391 1 + T C STAD 54735389 + 54735369 54735409 41 CCATATGTGATGCCCGGACTCTTAGGGGGCACCCATATAGA CCATATGTGATGCCCGGACTCTCAGGGGGCACCCATATAGA < 41bp 0.521327627198206 0.780277789970557 0.080073655 0.03165829 prediction 0.517900325544701 Functional Gain - FAM83B ENSG00000168143 CDS Human protein_coding chr6:54735389 chr6:54735391 nonsynonymous SNV 0.969 0 23 hm5C_associated_SNPs_106694 0 0 0 0 1 FAM83B chr6:54735488 5'GT 54735488 Upstream 98bp
chr8 39840251 39840251 1 + C A LUAD 39840247 + 39840227 39840267 41 CCCTCCTATCCTGGTCCACTCAGACTTGGTGCTGACGAACT CCCTCCTATCCTGGTCCACTCAGAATTGGTGCTGACGAACT < 41bp 0.354162227187242 0.758943241539807 0.14176741 0.46745548 prediction 0.517886483079615 Functional Gain - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39840247 chr8:39840251 nonsynonymous SNV 0.985 4 25 hm5C_associated_SNPs_106696 0 0 0 4 2 IDO2 chr8:39840171 3'AG 39840171 Downstream 81bp
chr8 39840251 39840251 1 + C A LUAD 39840247 + 39840227 39840267 41 CCCTCCTATCCTGGTCCACTCAGACTTGGTGCTGACGAACT CCCTCCTATCCTGGTCCACTCAGAATTGGTGCTGACGAACT < 41bp 0.354162227187242 0.758943241539807 0.14176741 0.46745548 prediction 0.517886483079615 Functional Gain - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39840247 chr8:39840251 nonsynonymous SNV 0.985 4 25 hm5C_associated_SNPs_106696 0 0 0 4 2 IDO2 chr8:39840289 5'GT 39840289 Upstream 39bp
chr16 1825152 1825152 1 + C A LUAD 1825148 + 1825128 1825168 41 CCTGTGGTACCGCTCACTCTCATGCCCACAGCAGGGCTGGC CCTGTGGTACCGCTCACTCTCATGACCACAGCAGGGCTGGC < 41bp 0.369642365849491 0.758924969355349 0.650116 0.7517178 prediction 0.517849938710698 Functional Gain - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825148 chr16:1825152 stopgain . 0 25 hm5C_associated_SNPs_106697 0 0 0 0 1 EME2 chr16:1825189 5'GT 1825189 Upstream 38bp
chr22 24121476 24121476 1 + C A TGCT 24121472 + 24121452 24121492 41 CCTGCCACGCAGGAAGCCCCCCGGCCTGCCAGCAGCCTCAG CCTGCCACGCAGGAAGCCCCCCGGACTGCCAGCAGCCTCAG < 41bp 0.646353305019935 0.905194778566091 0.40979287 0.49760276 prediction 0.517682947092312 Functional Gain - MMP11 ENSG00000099953 CDS Human protein_coding chr22:24121472 chr22:24121476 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_106700 0 0 1 0 1 MMP11 chr22:24121555 5'GT 24121555 Upstream 80bp
chr5 154181877 154181877 1 + C A COAD 154181873 + 154181853 154181893 41 GTGCCAAGATGAGCGCCGAACTGGCCAAGGTCATTAATGAT GTGCCAAGATGAGCGCCGAACTGGACAAGGTCATTAATGAT < 41bp 0.334419541544025 0.758833669421426 0.18786249 0.2660848 prediction 0.517667338842851 Functional Gain - LARP1 ENSG00000155506 CDS Human protein_coding chr5:154181873 chr5:154181877 nonsynonymous SNV 0.983 2 25 hm5C_associated_SNPs_106701 0 0 1 0 1 LARP1 chr5:154181959 5'GT 154181959 Upstream 83bp
chr12 53517601 53517601 1 + C A UCEC 53517600 + 53517580 53517620 41 CTGTTTCTAGGCCAGGGAATCCAGGTCAGCCTGTACTGCCA CTGTTTCTAGGCCAGGGAATCAAGGTCAGCCTGTACTGCCA < 41bp 0.501567083281379 0.760392987355124 0.91131294 0.9256803 prediction 0.51765180814749 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53517600 chr12:53517601 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_106702 0 0 0 0 2 SOAT2 chr12:53517512 3'AG 53517512 Downstream 90bp
chr12 53517601 53517601 1 + C A UCEC 53517600 + 53517580 53517620 41 CTGTTTCTAGGCCAGGGAATCCAGGTCAGCCTGTACTGCCA CTGTTTCTAGGCCAGGGAATCAAGGTCAGCCTGTACTGCCA < 41bp 0.501567083281379 0.760392987355124 0.91131294 0.9256803 prediction 0.51765180814749 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53517600 chr12:53517601 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_106702 0 0 0 0 2 SOAT2 chr12:53517657 5'GT 53517657 Upstream 57bp
chr16 29845345 29845345 1 + C T COAD 29845344 + 29845324 29845364 41 CAGGCTCTGCGGCTCAGGGCCCGCAAGGAGTGCTGGGACCG CAGGCTCTGCGGCTCAGGGCCTGCAAGGAGTGCTGGGACCG < 41bp 0.497766409429554 0.758789383335064 0.13202319 0.2659198 prediction 0.517578766670128 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29845344 chr16:29845345 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_106708 0 0 0 0 2 MVP chr16:29845256 3'AG 29845256 Downstream 90bp
chr16 29845345 29845345 1 + C T COAD 29845344 + 29845324 29845364 41 CAGGCTCTGCGGCTCAGGGCCCGCAAGGAGTGCTGGGACCG CAGGCTCTGCGGCTCAGGGCCTGCAAGGAGTGCTGGGACCG < 41bp 0.497766409429554 0.758789383335064 0.13202319 0.2659198 prediction 0.517578766670128 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29845344 chr16:29845345 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_106708 0 0 0 0 2 MVP chr16:29845387 5'GT 29845387 Upstream 43bp
chr7 54617843 54617843 1 + C T COAD 54617842 + 54617822 54617862 41 CTCAAGTGGTAGCCAAAATCCCCAAACAAAGTCCACAATCA CTCAAGTGGTAGCCAAAATCCTCAAACAAAGTCCACAATCA < 41bp 0.514129398575809 0.772898488657136 0.31499606 0.5543642 prediction 0.517538180162655 Functional Gain - VSTM2A ENSG00000170419 CDS Human protein_coding chr7:54617842 chr7:54617843 nonsynonymous SNV 0.982 4 22 hm5C_associated_SNPs_106711 0 0 0 0 1 VSTM2A chr7:54617863 5'GT 54617863 Upstream 21bp
chr19 41630672 41630672 1 + C A LUSC 41630668 + 41630648 41630688 41 TCGTGGTGGGACGCGCGCGGCTGCCGGCGCTGAAGGACCGC TCGTGGTGGGACGCGCGCGGCTGCAGGCGCTGAAGGACCGC < 41bp 0.656675223895324 0.915424885414534 0.40635014 0.42014742 prediction 0.517499323038419 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41630668 chr19:41630672 nonsynonymous SNV 0.006 3 25 hm5C_associated_SNPs_106714 0 0 0 0 1 CYP2F1 chr19:41630624 3'AG 41630624 Downstream 49bp
chr16 71950431 71950431 1 + C G LUAD 71950427 + 71950407 71950447 41 TGGCTGCTGGGAAAGATGAACGAGCTCGGATCCGTGTGGAG TGGCTGCTGGGAAAGATGAACGAGGTCGGATCCGTGTGGAG < 41bp 0.533959096259932 0.792708666443309 0.3197735 0.4214708 prediction 0.517499140366754 Functional Gain - IST1 ENSG00000182149 CDS Human protein_coding chr16:71950427 chr16:71950431 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_106715 0 0 1 0 1 IST1 chr16:71950365 3'AG 71950365 Downstream 67bp
chr17 42427851 42427851 1 + T G BRCA 42427848 + 42427828 42427868 41 AGGGTGCACTGCTGTCCGCACGGTGCCTTCTGCGACCTGGT AGGGTGCACTGCTGTCCGCACGGGGCCTTCTGCGACCTGGT < 41bp 0.341940400724706 0.758742673344635 0.04665506 0.80405784 prediction 0.51748534668927 Functional Gain - GRN ENSG00000030582 CDS Human protein_coding chr17:42427848 chr17:42427851 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_106716 0 0 1 0 2 GRN chr17:42427810 3'AG 42427810 Downstream 42bp
chr17 42427851 42427851 1 + T G BRCA 42427848 + 42427828 42427868 41 AGGGTGCACTGCTGTCCGCACGGTGCCTTCTGCGACCTGGT AGGGTGCACTGCTGTCCGCACGGGGCCTTCTGCGACCTGGT < 41bp 0.341940400724706 0.758742673344635 0.04665506 0.80405784 prediction 0.51748534668927 Functional Gain - GRN ENSG00000030582 CDS Human protein_coding chr17:42427848 chr17:42427851 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_106716 0 0 1 0 2 GRN chr17:42427945 5'GT 42427945 Upstream 95bp
chr7 111981074 111981074 1 + C T SKCM 111981073 + 111981053 111981093 41 CTAAACACACTTCGCTGCTCCCCGATAGAAAGACGTGGGAT CTAAACACACTTCGCTGCTCCTCGATAGAAAGACGTGGGAT < 41bp 0.499832309138342 0.75873492523091 0.26318443 0.90237415 prediction 0.517469850461821 Functional Gain - ZNF277 ENSG00000198839 CDS Human protein_coding chr7:111981073 chr7:111981074 nonsynonymous SNV 0.851 4 22 hm5C_associated_SNPs_106717 0 0 0 0 1 ZNF277 chr7:111981101 5'GT 111981101 Upstream 28bp
chr7 139026191 139026191 1 + C G LUSC 139026187 + 139026167 139026207 41 GGACTTCTGCGGGAGTTGCGCTACCTGAGCGCGGCCACCGG GGACTTCTGCGGGAGTTGCGCTACGTGAGCGCGGCCACCGG < 41bp 0.540067553323976 0.798795200246869 0.48646778 0.4743207 prediction 0.517455293845786 Functional Gain - C7orf55-LUC7L2;FMC1 ENSG00000164898;ENSG00000269955 CDS Human other chr7:139026187 chr7:139026191 nonsynonymous SNV 0.957 0 25 hm5C_associated_SNPs_106718 0 0 1 0 1 C7orf55-LUC7L2;FMC1 chr7:139026268 5'GT 139026268 Upstream 78bp
chr10 50854662 50854662 1 + T A LUSC 50854658 + 50854638 50854678 41 ACACCCACAGGGCACTCCAGCTCCTTCACGGCGGAGGCTAC ACACCCACAGGGCACTCCAGCTCCATCACGGCGGAGGCTAC < 41bp 0.400200765133074 0.758724888929198 0.08700088 0.49727803 prediction 0.517449777858396 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50854658 chr10:50854662 nonsynonymous SNV 0.968 5 25 hm5C_associated_SNPs_106719 0 0 0 0 1 CHAT chr10:50854720 5'GT 50854720 Upstream 59bp
chr1 156882111 156882111 1 + C T SKCM 156882110 + 156882090 156882130 41 ACCATGGTGGGACCTGCCATCCCCAGGATGGGAGCTGTATC ACCATGGTGGGACCTGCCATCTCCAGGATGGGAGCTGTATC < 41bp 0.490840742381579 0.75871564342055 0.19641188 0.9360066 prediction 0.517431286841099 Functional Gain - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156882110 chr1:156882111 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_106721 0 0 0 0 2 PEAR1 chr1:156882039 3'AG 156882039 Downstream 73bp
chr1 156882111 156882111 1 + C T SKCM 156882110 + 156882090 156882130 41 ACCATGGTGGGACCTGCCATCCCCAGGATGGGAGCTGTATC ACCATGGTGGGACCTGCCATCTCCAGGATGGGAGCTGTATC < 41bp 0.490840742381579 0.75871564342055 0.19641188 0.9360066 prediction 0.517431286841099 Functional Gain - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156882110 chr1:156882111 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_106721 0 0 0 0 2 PEAR1 chr1:156882167 5'GT 156882167 Upstream 57bp
chr15 80460483 80460483 1 + C A UCEC 80460482 + 80460462 80460502 41 GGCCCATGGGACAGATGAAACCTGATGACTGTGAGTGACCG GGCCCATGGGACAGATGAAACATGATGACTGTGAGTGACCG < 41bp 0.504378558784403 0.763091485367634 0.16486368 0.17340049 prediction 0.517425853166462 Functional Gain - FAH ENSG00000103876 CDS Human protein_coding chr15:80460482 chr15:80460483 nonsynonymous SNV 0.755 4 22 hm5C_associated_SNPs_106722 0 0 1 0 2 FAH chr15:80460394 3'AG 80460394 Downstream 90bp
chr15 80460483 80460483 1 + C A UCEC 80460482 + 80460462 80460502 41 GGCCCATGGGACAGATGAAACCTGATGACTGTGAGTGACCG GGCCCATGGGACAGATGAAACATGATGACTGTGAGTGACCG < 41bp 0.504378558784403 0.763091485367634 0.16486368 0.17340049 prediction 0.517425853166462 Functional Gain - FAH ENSG00000103876 CDS Human protein_coding chr15:80460482 chr15:80460483 nonsynonymous SNV 0.755 4 22 hm5C_associated_SNPs_106722 0 0 1 0 2 FAH chr15:80460491 5'GT 80460491 Upstream 9bp
chr16 3454589 3454589 1 + C G SKCM 3454588 + 3454568 3454608 41 GAGCTTATGACCGGCTGAGCCCCCATCATTGGGAGAAATCC GAGCTTATGACCGGCTGAGCCGCCATCATTGGGAGAAATCC < 41bp 0.567614125132002 0.826322028797015 0.03425291 0.30792233 prediction 0.517415807330027 Functional Gain - ZNF174 ENSG00000103343;ENSG00000262621 CDS Human other chr16:3454588 chr16:3454589 nonsynonymous SNV 0.722 0 22 hm5C_associated_SNPs_106723 0 0 0 0 1 ZNF174 chr16:3454648 5'GT 3454648 Upstream 60bp
chr1 162569129 162569129 1 + T C rs147708415 162569127 + 162569107 162569147 41 TCATCGATGAGAATGGAGTTCATGAGCTGGTGAAAAATGGT TCATCGATGAGAATGGAGTTCACGAGCTGGTGAAAAATGGT < 41bp 0.505304006182561 0.764011807580093 0.06437802 0.09796211 prediction 0.517415602795064 Functional Gain - UAP1 ENSG00000117143 CDS Human protein_coding chr1:162569127 chr1:162569129 synonymous SNV . 0 23 hm5C_associated_SNPs_106724 0 0 1 0 1 UAP1 chr1:162569061 3'AG 162569061 Downstream 69bp
chr10 43610089 43610089 1 + C G rs567241943 43610085 + 43610065 43610105 41 GAGATGACCTTCCGGAGGCCCGCCCAGGCCTTCCCGGTCAG GAGATGACCTTCCGGAGGCCCGCCGAGGCCTTCCCGGTCAG < 41bp 0.472565325744497 0.758705577640871 0.031363875 0.23438758 prediction 0.517411155281742 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43610085 chr10:43610089 nonsynonymous SNV 0.895 3 25 hm5C_associated_SNPs_106725 0 0 0 0 1 RET chr10:43610184 5'GT 43610184 Upstream 96bp
chr10 13234478 13234478 1 + T C UCEC 13234476 + 13234456 13234496 41 ATGGGGAGCCCAAAACCAGCCATCAAGTCCATCTCGGCCTC ATGGGGAGCCCAAAACCAGCCACCAAGTCCATCTCGGCCTC < 41bp 0.552576624664741 0.811259203772158 0.08716372 0.11318478 prediction 0.517365158214835 Functional Gain - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13234476 chr10:13234478 nonsynonymous SNV 0.645 1 23 hm5C_associated_SNPs_106730 0 0 1 0 2 MCM10 chr10:13234451 3'AG 13234451 Downstream 28bp
chr10 13234478 13234478 1 + T C UCEC 13234476 + 13234456 13234496 41 ATGGGGAGCCCAAAACCAGCCATCAAGTCCATCTCGGCCTC ATGGGGAGCCCAAAACCAGCCACCAAGTCCATCTCGGCCTC < 41bp 0.552576624664741 0.811259203772158 0.08716372 0.11318478 prediction 0.517365158214835 Functional Gain - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13234476 chr10:13234478 nonsynonymous SNV 0.645 1 23 hm5C_associated_SNPs_106730 0 0 1 0 2 MCM10 chr10:13234568 5'GT 13234568 Upstream 91bp
chr11 3829822 3829822 1 + C G rs558862497 3829821 + 3829801 3829841 41 GACCAGCCCGCAGAGCCAGCCCCCGACCCCGGGCCACCTGG GACCAGCCCGCAGAGCCAGCCGCCGACCCCGGGCCACCTGG < 41bp 0.48524286215735 0.758675756001641 0.274096 0.8798712 prediction 0.517351512003283 Functional Gain - PGAP2 ENSG00000148985 UTR5 Human protein_coding chr11:3829821 chr11:3829822 . . 0 22 hm5C_associated_SNPs_106731 0 0 1 0 1 PGAP2 chr11:3829881 5'GT 3829881 Upstream 60bp
chr1 52798480 52798480 1 + C A SARC 52798476 + 52798456 52798496 41 ACAAGTCCAATGAGCATGTCCTGGCAGGAGGTGCCTGCTTC ACAAGTCCAATGAGCATGTCCTGGAAGGAGGTGCCTGCTTC < 41bp 0.343640104036627 0.758669538283404 0.055726618 0.06336784 prediction 0.517339076566807 Functional Gain - ZFYVE9 ENSG00000157077 CDS Human protein_coding chr1:52798476 chr1:52798480 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_106732 0 0 1 0 1 ZFYVE9 chr1:52798440 3'AG 52798440 Downstream 41bp
chr3 197882506 197882506 1 + T A rs2690956 197882502 + 197882482 197882522 41 CTCCGTGGCAGGTTCTCCGCCGGCTCTGGCTGCGGGCGGCC CTCCGTGGCAGGTTCTCCGCCGGCACTGGCTGCGGGCGGCC < 41bp 0.46747515483106 0.758635989666564 0.23216614 0.33982518 prediction 0.517271979333128 Functional Gain - FAM157A ENSG00000236438 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:197882502 chr3:197882506 . . 0 25 hm5C_associated_SNPs_106736 0 0 0 0 1 FAM157A chr3:197882493 3'AG 197882493 Downstream 14bp
chrX 14927087 14927087 1 + C A LUSC 14927083 + 14927063 14927103 41 ACTATGTCAGTGTAGAATACCTGCCTCCCCACATGGGTGGA ACTATGTCAGTGTAGAATACCTGCATCCCCACATGGGTGGA < 41bp 0.333422017778496 0.75863453302043 0.11016804 0.09992847 prediction 0.51726906604086 Functional Gain - MOSPD2 ENSG00000130150 CDS Human protein_coding chrX:14927083 chrX:14927087 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_106737 0 0 0 0 1 MOSPD2 chrX:14927106 5'GT 14927106 Upstream 20bp
chr20 13251388 13251388 1 + C G rs75146235 13251387 + 13251367 13251407 41 AATGGGCAGAATCCAAATATCCAGGTAATTCTTGGCACCTG AATGGGCAGAATCCAAATATCGAGGTAATTCTTGGCACCTG < 41bp 0.58297310560805 0.841576744925721 0.88096976 0.91883147 prediction 0.517207278635341 Functional Gain - ISM1 ENSG00000101230 CDS Human protein_coding chr20:13251387 chr20:13251388 nonsynonymous SNV 0.992 3 22 hm5C_associated_SNPs_106741 0 0 1 0 1 ISM1 chr20:13251390 5'GT 13251390 Upstream 3bp
chr14 89039278 89039278 1 + C G rs548038372 89039277 + 89039257 89039297 41 AAACAGGACGTTTGTGTGAACCAGAGGTGCTTAACAGCTTA AAACAGGACGTTTGTGTGAACGAGAGGTGCTTAACAGCTTA < 41bp 0.572901741612094 0.831497762503491 0.7036922 0.7324044 prediction 0.517192041782794 Functional Gain - ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89039277 chr14:89039278 nonsynonymous SNV 0.985 1 22 hm5C_associated_SNPs_106742 0 0 1 0 1 ZC3H14 chr14:89039351 5'GT 89039351 Upstream 74bp
chrX 48682427 48682427 1 + T A LUAD 48682423 + 48682403 48682443 41 AGGCCTAGACGTGACCCAACCTTGTGGGGACTGTGGAACAA AGGCCTAGACGTGACCCAACCTTGAGGGGACTGTGGAACAA < 41bp 0.439246097248848 0.758586837486831 0.0651876 0.105122715 prediction 0.517173674973662 Functional Gain - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48682423 chrX:48682427 stopgain 0.932 1 25 hm5C_associated_SNPs_106744 0 0 1 0 2 HDAC6 chrX:48682332 3'AG 48682332 Downstream 96bp
chrX 48682427 48682427 1 + T A LUAD 48682423 + 48682403 48682443 41 AGGCCTAGACGTGACCCAACCTTGTGGGGACTGTGGAACAA AGGCCTAGACGTGACCCAACCTTGAGGGGACTGTGGAACAA < 41bp 0.439246097248848 0.758586837486831 0.0651876 0.105122715 prediction 0.517173674973662 Functional Gain - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48682423 chrX:48682427 stopgain 0.932 1 25 hm5C_associated_SNPs_106744 0 0 1 0 2 HDAC6 chrX:48682478 5'GT 48682478 Upstream 52bp
chr15 44695169 44695169 1 + T C PAAD 44695167 + 44695147 44695187 41 TATAATGGGGATGATGGTAACGTAGGTGAGTATGAGGCAGA TATAATGGGGATGATGGTAACGCAGGTGAGTATGAGGCAGA < 41bp 0.496049996017479 0.758584301588646 0.82146007 0.6573588 prediction 0.517168603177292 Functional Gain - CASC4 ENSG00000166734 CDS Human protein_coding chr15:44695167 chr15:44695169 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106745 0 0 1 0 2 CASC4 chr15:44695085 3'AG 44695085 Downstream 85bp
chr15 44695169 44695169 1 + T C PAAD 44695167 + 44695147 44695187 41 TATAATGGGGATGATGGTAACGTAGGTGAGTATGAGGCAGA TATAATGGGGATGATGGTAACGCAGGTGAGTATGAGGCAGA < 41bp 0.496049996017479 0.758584301588646 0.82146007 0.6573588 prediction 0.517168603177292 Functional Gain - CASC4 ENSG00000166734 CDS Human protein_coding chr15:44695167 chr15:44695169 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106745 0 0 1 0 2 CASC4 chr15:44695252 5'GT 44695252 Upstream 84bp
chr6 4892568 4892568 1 + C G LUSC 4892564 + 4892544 4892584 41 CCACTAGTGCCTCAGGTGCCCGGCCCTGTGACTGCAGCCAT CCACTAGTGCCTCAGGTGCCCGGCGCTGTGACTGCAGCCAT < 41bp 0.537570806344997 0.796119131862952 0.23470354 0.7756275 prediction 0.51709665103591 Functional Gain - CDYL ENSG00000153046 CDS Human protein_coding chr6:4892564 chr6:4892568 nonsynonymous SNV 0.066 1 25 hm5C_associated_SNPs_106748 0 0 1 0 1 CDYL chr6:4892613 5'GT 4892613 Upstream 46bp
chr2 98340508 98340508 1 + C A LIHC 98340504 + 98340484 98340524 41 GGGAGGCCCAGGGGCGATGCCAGACCCCGCGGCGCACCTGC GGGAGGCCCAGGGGCGATGCCAGAACCCGCGGCGCACCTGC < 41bp 0.650229657497982 0.908777473531891 0.8688707 0.88608634 prediction 0.517095632067819 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98340504 chr2:98340508 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_106749 0 0 0 0 1 ZAP70 chr2:98340479 3'AG 98340479 Downstream 30bp
chr8 146228262 146228262 1 - A C rs7823346 146228264 - 146228244 146228284 41 GGCATTTCCGGCCCAGGGGGCTTGGCTCCCCGCGGCACGGG GGCATTTCCGGCCCAGGGGGCTGGGCTCCCCGCGGCACGGG < 41bp 0.435718739965496 0.758527875449382 0.676002 0.88158333 prediction 0.517055750898765 Functional Gain - ZNF252P;ZNF252P-AS1 ENSG00000196922;ENSG00000255559 ncRNA_exonic Human other chr8:146228264 chr8:146228262 . . 0 23 hm5C_associated_SNPs_106753 0 0 1 0 1 ZNF252P;ZNF252P-AS1 chr8:146228203 5'GT 146228203 Upstream 60bp
chr2 43871886 43871886 1 + T C SKCM 43871884 + 43871864 43871904 41 GTAGCTCTGGAGTCCCAACTCATGAAATTTAGAGTTCAAGC GTAGCTCTGGAGTCCCAACTCACGAAATTTAGAGTTCAAGC < 41bp 0.533752505958604 0.792279526660705 0.06777853 0.13648972 prediction 0.5170540414042 Functional Gain - PLEKHH2 ENSG00000152527 CDS Human protein_coding chr2:43871884 chr2:43871886 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_106754 0 0 0 0 2 PLEKHH2 chr2:43871810 3'AG 43871810 Downstream 77bp
chr2 43871886 43871886 1 + T C SKCM 43871884 + 43871864 43871904 41 GTAGCTCTGGAGTCCCAACTCATGAAATTTAGAGTTCAAGC GTAGCTCTGGAGTCCCAACTCACGAAATTTAGAGTTCAAGC < 41bp 0.533752505958604 0.792279526660705 0.06777853 0.13648972 prediction 0.5170540414042 Functional Gain - PLEKHH2 ENSG00000152527 CDS Human protein_coding chr2:43871884 chr2:43871886 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_106754 0 0 0 0 2 PLEKHH2 chr2:43871935 5'GT 43871935 Upstream 50bp
chr6 109578931 109578931 1 + C A SARC 109578927 + 109578907 109578947 41 AGCTGGCCCTGGACCTGTGGCTCACCCCAGCCACGCCTGAG AGCTGGCCCTGGACCTGTGGCTCAACCCAGCCACGCCTGAG < 41bp 0.325139064877726 0.758486350628799 0.051464766 0.47994924 prediction 0.516972701257597 Functional Gain - C6orf183 ENSG00000243587;ENSG00000233908 intergenic Human other chr6:109578927 chr6:109578931 . . 0 25 hm5C_associated_SNPs_106757 0 0 1 0 1 C6orf183 chr6:109578977 5'GT 109578977 Upstream 47bp
chr6 28253470 28253470 1 + C T SKCM 28253469 + 28253449 28253489 41 CACAGCGTCCTCAAGGGAACCCCCAAGAAGTGAGTGGTGAG CACAGCGTCCTCAAGGGAACCTCCAAGAAGTGAGTGGTGAG < 41bp 0.505440791124178 0.763919788347429 0.11152035 0.96371996 prediction 0.516957994446503 Functional Gain - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28253469 chr6:28253470 nonsynonymous SNV 0.016 1 22 hm5C_associated_SNPs_106760 0 0 0 0 1 PGBD1 chr6:28253484 5'GT 28253484 Upstream 15bp
chr14 24600969 24600969 1 + T G LAML 24600967 + 24600947 24600987 41 TGGCTGGCAGCAGTGGTCATCTTTGGGCCGCTTCTGCAGTT TGGCTGGCAGCAGTGGTCATCTGTGGGCCGCTTCTGCAGTT < 41bp 0.418372091473415 0.758473037983149 0.15883711 0.27849013 prediction 0.516946075966298 Functional Gain - FITM1 ENSG00000139914;ENSG00000259371 CDS Human other chr14:24600967 chr14:24600969 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_106761 0 0 0 0 1 FITM1 chr14:24601038 5'GT 24601038 Upstream 70bp
chr2 233321772 233321772 1 + C A KIRC 233321768 + 233321748 233321788 41 AGGTCATCTCCGTGATGAACCGGGCCAAGCAAGCAGGTGAG AGGTCATCTCCGTGATGAACCGGGACAAGCAAGCAGGTGAG < 41bp 0.654269412007153 0.912692049972246 0.87062275 0.8543392 prediction 0.516845275930184 Functional Gain - ALPI ENSG00000163295 CDS Human protein_coding chr2:233321768 chr2:233321772 nonsynonymous SNV 0.968 5 25 hm5C_associated_SNPs_106767 0 0 1 0 1 ALPI chr2:233321783 5'GT 233321783 Upstream 12bp
chr3 183860073 183860073 1 + T C GBM 183860071 + 183860051 183860091 41 GCCTGAGGGCTCGGTGATCTCTTTGCACCCTCCAGATGCAG GCCTGAGGGCTCGGTGATCTCTCTGCACCCTCCAGATGCAG < 41bp 0.482045920919622 0.758404246709521 0.061637282 0.11270869 prediction 0.516808493419042 Functional Gain - EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183860071 chr3:183860073 synonymous SNV . 0 23 hm5C_associated_SNPs_106770 0 0 0 0 2 EIF2B5 chr3:183860025 3'AG 183860025 Downstream 49bp
chr3 183860073 183860073 1 + T C GBM 183860071 + 183860051 183860091 41 GCCTGAGGGCTCGGTGATCTCTTTGCACCCTCCAGATGCAG GCCTGAGGGCTCGGTGATCTCTCTGCACCCTCCAGATGCAG < 41bp 0.482045920919622 0.758404246709521 0.061637282 0.11270869 prediction 0.516808493419042 Functional Gain - EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183860071 chr3:183860073 synonymous SNV . 0 23 hm5C_associated_SNPs_106770 0 0 0 0 2 EIF2B5 chr3:183860166 5'GT 183860166 Upstream 94bp
chr2 98353986 98353986 1 + T C UCEC 98353984 + 98353964 98354004 41 GAGCTGCTGCACCAGGTGTCCATGGGGATGAAGTACCTGGA GAGCTGCTGCACCAGGTGTCCACGGGGATGAAGTACCTGGA < 41bp 0.523261026339171 0.781662873783966 0.6788578 0.7749543 prediction 0.516803694889589 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98353984 chr2:98353986 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106771 0 0 0 0 1 ZAP70 chr2:98353936 3'AG 98353936 Downstream 51bp
chr2 69046350 69046350 1 + C T LGG 69046349 + 69046329 69046369 41 ATACCCCTGTCACCCCCTGCCCAGAAAAATGACCCCAAGAA ATACCCCTGTCACCCCCTGCCTAGAAAAATGACCCCAAGAA < 41bp 0.50799568933583 0.76639210444554 0.0280824 0.055374086 prediction 0.516792830219421 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69046349 chr2:69046350 stopgain 0.816 0 22 hm5C_associated_SNPs_106773 0 0 0 0 1 ARHGAP25 chr2:69046255 3'AG 69046255 Downstream 96bp
chr3 50683670 50683670 1 + T C STAD 50683668 + 50683648 50683688 41 GCCAGTACGGCTTCCCCAATCCTGAGTGGTCAGAAGTCTCT GCCAGTACGGCTTCCCCAATCCCGAGTGGTCAGAAGTCTCT < 41bp 0.540835062944055 0.799226527084861 0.08423573 0.08184314 prediction 0.516782928281613 Functional Gain - MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50683668 chr3:50683670 synonymous SNV . 0 23 hm5C_associated_SNPs_106775 0 0 1 0 2 MAPKAPK3 chr3:50683571 3'AG 50683571 Downstream 100bp
chr3 50683670 50683670 1 + T C STAD 50683668 + 50683648 50683688 41 GCCAGTACGGCTTCCCCAATCCTGAGTGGTCAGAAGTCTCT GCCAGTACGGCTTCCCCAATCCCGAGTGGTCAGAAGTCTCT < 41bp 0.540835062944055 0.799226527084861 0.08423573 0.08184314 prediction 0.516782928281613 Functional Gain - MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50683668 chr3:50683670 synonymous SNV . 0 23 hm5C_associated_SNPs_106775 0 0 1 0 2 MAPKAPK3 chr3:50683695 5'GT 50683695 Upstream 26bp
chr4 651212 651212 1 + C T CESC 651211 + 651191 651231 41 AAGATGAACAAGCTGGAGAACCGCAAGGACATCGCACAGGA AAGATGAACAAGCTGGAGAACTGCAAGGACATCGCACAGGA < 41bp 0.514702284042357 0.773087467122609 0.25190234 0.46290144 prediction 0.516770366160504 Functional Gain - PDE6B ENSG00000133256 CDS Human protein_coding chr4:651211 chr4:651212 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_106776 0 0 0 0 2 PDE6B chr4:651140 3'AG 651140 Downstream 73bp
chr4 651212 651212 1 + C T CESC 651211 + 651191 651231 41 AAGATGAACAAGCTGGAGAACCGCAAGGACATCGCACAGGA AAGATGAACAAGCTGGAGAACTGCAAGGACATCGCACAGGA < 41bp 0.514702284042357 0.773087467122609 0.25190234 0.46290144 prediction 0.516770366160504 Functional Gain - PDE6B ENSG00000133256 CDS Human protein_coding chr4:651211 chr4:651212 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_106776 0 0 0 0 2 PDE6B chr4:651283 5'GT 651283 Upstream 72bp
chr16 2284603 2284603 1 + T C UCEC 2284601 + 2284581 2284621 41 CAGAACGCACAGCAGGTGCACTTCAGGACACACCTGGAGGA CAGAACGCACAGCAGGTGCACTCCAGGACACACCTGGAGGA < 41bp 0.477228843393006 0.758383850787852 0.20414105 0.8801174 prediction 0.516767701575704 Functional Gain - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2284601 chr16:2284603 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_106777 0 0 1 0 1 E4F1 chr16:2284584 3'AG 2284584 Downstream 20bp
chr10 124216494 124216494 1 + T G rs150019974 124216492 + 124216472 124216512 41 AAAAGCCAACTGGAGCTTCTCATCAGCATCAATGTGAAGCC AAAAGCCAACTGGAGCTTCTCAGCAGCATCAATGTGAAGCC < 41bp 0.590419163091333 0.848802210873917 0.10493189 0.8554505 prediction 0.516766095565168 Functional Gain - ARMS2 ENSG00000254636 UTR3 Human protein_coding chr10:124216492 chr10:124216494 . . 0 23 hm5C_associated_SNPs_106778 0 0 0 2 1 ARMS2 chr10:124216423 3'AG 124216423 Downstream 72bp
chr19 54483190 54483190 1 + T G BLCA 54483188 + 54483168 54483208 41 CTGCTGCTCGGGGGTGTGTGCGTGGCGGCCTCCCGCGTCTA CTGCTGCTCGGGGGTGTGTGCGGGGCGGCCTCCCGCGTCTA < 41bp 0.642310719297998 0.900682848907694 0.9071819 0.9544258 prediction 0.516744259219391 Functional Gain - CACNG8 ENSG00000142408 CDS Human protein_coding chr19:54483188 chr19:54483190 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_106781 0 0 1 0 2 CACNG8 chr19:54483121 3'AG 54483121 Downstream 70bp
chr19 54483190 54483190 1 + T G BLCA 54483188 + 54483168 54483208 41 CTGCTGCTCGGGGGTGTGTGCGTGGCGGCCTCCCGCGTCTA CTGCTGCTCGGGGGTGTGTGCGGGGCGGCCTCCCGCGTCTA < 41bp 0.642310719297998 0.900682848907694 0.9071819 0.9544258 prediction 0.516744259219391 Functional Gain - CACNG8 ENSG00000142408 CDS Human protein_coding chr19:54483188 chr19:54483190 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_106781 0 0 1 0 2 CACNG8 chr19:54483261 5'GT 54483261 Upstream 72bp
chr20 34575396 34575396 1 + T A LUSC 34575392 + 34575372 34575412 41 ATGGCGAAGATAGAGAGGTTCTCGTATGGGCAGCTGATCTC ATGGCGAAGATAGAGAGGTTCTCGAATGGGCAGCTGATCTC < 41bp 0.599866712982091 0.858234318850044 0.34142244 0.8343431 prediction 0.516735211735906 Functional Gain - CNBD2 ENSG00000149646 CDS Human protein_coding chr20:34575392 chr20:34575396 nonsynonymous SNV 0.073 0 25 hm5C_associated_SNPs_106783 0 0 0 0 2 CNBD2 chr20:34575317 3'AG 34575317 Downstream 80bp
chr20 34575396 34575396 1 + T A LUSC 34575392 + 34575372 34575412 41 ATGGCGAAGATAGAGAGGTTCTCGTATGGGCAGCTGATCTC ATGGCGAAGATAGAGAGGTTCTCGAATGGGCAGCTGATCTC < 41bp 0.599866712982091 0.858234318850044 0.34142244 0.8343431 prediction 0.516735211735906 Functional Gain - CNBD2 ENSG00000149646 CDS Human protein_coding chr20:34575392 chr20:34575396 nonsynonymous SNV 0.073 0 25 hm5C_associated_SNPs_106783 0 0 0 0 2 CNBD2 chr20:34575455 5'GT 34575455 Upstream 60bp
chr17 4701662 4701662 1 + T A STAD 4701658 + 4701638 4701678 41 CAGAGTCAGGGGTAGAGCGGCAAGTACTTTTGGGAGACCAG CAGAGTCAGGGGTAGAGCGGCAAGAACTTTTGGGAGACCAG < 41bp 0.574928837762387 0.833282408118262 0.35208014 0.36597556 prediction 0.51670714071175 Functional Gain - PSMB6 ENSG00000142507 CDS Human protein_coding chr17:4701658 chr17:4701662 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_106786 0 0 1 0 1 PSMB6 chr17:4701575 3'AG 4701575 Downstream 88bp
chr14 24113702 24113702 1 + C G rs148351218 24113701 + 24113681 24113721 41 GAGCTGGCCCCCAAGGACATCCGGGTAAACTGCGTGGTTCC GAGCTGGCCCCCAAGGACATCGGGGTAAACTGCGTGGTTCC < 41bp 0.588390640376942 0.846740903526706 0.87844527 0.911582 prediction 0.516700526299528 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113701 chr14:24113702 nonsynonymous SNV 0.500 4 22 hm5C_associated_SNPs_106787 0 0 1 0 3 DHRS2 chr14:24113618 3'AG 24113618 Downstream 85bp
chr14 24113702 24113702 1 + C G rs148351218 24113701 + 24113681 24113721 41 GAGCTGGCCCCCAAGGACATCCGGGTAAACTGCGTGGTTCC GAGCTGGCCCCCAAGGACATCGGGGTAAACTGCGTGGTTCC < 41bp 0.588390640376942 0.846740903526706 0.87844527 0.911582 prediction 0.516700526299528 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113701 chr14:24113702 nonsynonymous SNV 0.500 4 22 hm5C_associated_SNPs_106787 0 0 1 0 3 DHRS2 chr14:24113752 5'GT 24113752 Upstream 51bp
chr14 24113702 24113702 1 + C G rs148351218 24113701 + 24113681 24113721 41 GAGCTGGCCCCCAAGGACATCCGGGTAAACTGCGTGGTTCC GAGCTGGCCCCCAAGGACATCGGGGTAAACTGCGTGGTTCC < 41bp 0.588390640376942 0.846740903526706 0.87844527 0.911582 prediction 0.516700526299528 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113701 chr14:24113702 nonsynonymous SNV 0.500 4 22 hm5C_associated_SNPs_106787 0 0 1 0 3 DHRS2 chr14:24113763 5'GT 24113763 Upstream 62bp
chr6 17507504 17507504 1 + C G rs146710056 17507500 + 17507480 17507520 41 TAACATGTTTAATCATCTTTCGGCCGTCAGCGAAAGCATCC TAACATGTTTAATCATCTTTCGGCGGTCAGCGAAAGCATCC < 41bp 0.470485156245676 0.758342867734826 0.68256825 0.9177648 prediction 0.516685735469653 Functional Gain - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17507500 chr6:17507504 synonymous SNV . 0 25 hm5C_associated_SNPs_106788 0 0 1 0 1 CAP2 chr6:17507543 5'GT 17507543 Upstream 40bp
chr4 57861558 57861558 1 + C A KIRP 57861554 + 57861534 57861574 41 ACCAGTACTATATGGGTTAGCATGCTGGCAAGAGGAGGACA ACCAGTACTATATGGGTTAGCATGATGGCAAGAGGAGGACA < 41bp 0.355227242531949 0.758333041952215 0.36542803 0.34383482 prediction 0.51666608390443 Functional Gain - POLR2B ENSG00000047315 CDS Human protein_coding chr4:57861554 chr4:57861558 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_106790 0 0 1 0 1 POLR2B chr4:57861575 5'GT 57861575 Upstream 18bp
chr9 131767451 131767451 1 + C G UCEC 131767447 + 131767427 131767467 41 TCAACCTGGGTTACTTGTGCCAGGCATGTACCTCTCTCCTG TCAACCTGGGTTACTTGTGCCAGGGATGTACCTCTCTCCTG < 41bp 0.473557777482002 0.758331833079783 0.8647391 0.9198091 prediction 0.516663666159565 Functional Gain - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131767447 chr9:131767451 nonsynonymous SNV 0.953 1 25 hm5C_associated_SNPs_106791 0 0 1 0 2 NUP188 chr9:131767426 3'AG 131767426 Downstream 26bp
chr9 131767451 131767451 1 + C G UCEC 131767447 + 131767427 131767467 41 TCAACCTGGGTTACTTGTGCCAGGCATGTACCTCTCTCCTG TCAACCTGGGTTACTTGTGCCAGGGATGTACCTCTCTCCTG < 41bp 0.473557777482002 0.758331833079783 0.8647391 0.9198091 prediction 0.516663666159565 Functional Gain - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131767447 chr9:131767451 nonsynonymous SNV 0.953 1 25 hm5C_associated_SNPs_106791 0 0 1 0 2 NUP188 chr9:131767500 5'GT 131767500 Upstream 50bp
chr19 4207920 4207920 1 + C G LUAD 4207916 + 4207896 4207936 41 GCCCTGGCGGGGGACAAACTCATCCTGCACCTTCTGCAAGA GCCCTGGCGGGGGACAAACTCATCGTGCACCTTCTGCAAGA < 41bp 0.537396157574881 0.795714151675181 0.23968449 0.11179504 prediction 0.5166359882006 Functional Gain - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4207916 chr19:4207920 nonsynonymous SNV 0.427 0 25 hm5C_associated_SNPs_106792 0 0 1 0 1 ANKRD24 chr19:4207965 5'GT 4207965 Upstream 46bp
chr10 118321055 118321055 1 + T A rs111319548 118321051 + 118321031 118321071 41 ATGTGGATGTTGGGGACTTGCAGATGGTTAAATTTATTTGG ATGTGGATGTTGGGGACTTGCAGAAGGTTAAATTTATTTGG < 41bp 0.575492250246287 0.833804358348151 0.492003 0.58138484 prediction 0.516624216203726 Functional Gain - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118321051 chr10:118321055 nonsynonymous SNV 0.699 0 25 hm5C_associated_SNPs_106794 0 0 0 0 2 PNLIP chr10:118320984 3'AG 118320984 Downstream 72bp
chr10 118321055 118321055 1 + T A rs111319548 118321051 + 118321031 118321071 41 ATGTGGATGTTGGGGACTTGCAGATGGTTAAATTTATTTGG ATGTGGATGTTGGGGACTTGCAGAAGGTTAAATTTATTTGG < 41bp 0.575492250246287 0.833804358348151 0.492003 0.58138484 prediction 0.516624216203726 Functional Gain - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118321051 chr10:118321055 nonsynonymous SNV 0.699 0 25 hm5C_associated_SNPs_106794 0 0 0 0 2 PNLIP chr10:118321148 5'GT 118321148 Upstream 94bp
chr15 45427832 45427832 1 + C G rs202192396 45427831 + 45427811 45427851 41 CCCTGCTCATGTGGGCGGCGCCCGACCCCGCCACCGGGCAG CCCTGCTCATGTGGGCGGCGCGCGACCCCGCCACCGGGCAG < 41bp 0.592792346565334 0.851085119286485 0.8638752 0.88772786 prediction 0.516585545442302 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45427831 chr15:45427832 nonsynonymous SNV 0.308 4 22 hm5C_associated_SNPs_106795 0 0 0 0 1 DUOX1 chr15:45427873 5'GT 45427873 Upstream 42bp
chr1 156169976 156169976 1 + T G PAAD 156169973 + 156169953 156169993 41 CCAGAGTAACACAGTCAAATCACTGGTGGCTGGTGGCTCAG CCAGAGTAACACAGTCAAATCACGGGTGGCTGGTGGCTCAG < 41bp 0.656525073263968 0.914802717830722 0.58590645 0.90374213 prediction 0.516555289133508 Functional Gain - SLC25A44 ENSG00000160785 CDS Human protein_coding chr1:156169973 chr1:156169976 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_106797 0 0 1 0 1 SLC25A44 chr1:156170019 5'GT 156170019 Upstream 44bp
chr3 44926906 44926906 1 + C A rs148245944 44926905 + 44926885 44926925 41 CAAACGAGCAGTCCTGTGTTCCGGCGAGGACAGGTGTTTCA CAAACGAGCAGTCCTGTGTTCAGGCGAGGACAGGTGTTTCA < 41bp 0.498422003319031 0.758275349981876 0.73586345 0.8737911 prediction 0.516550699963752 Functional Gain - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44926905 chr3:44926906 synonymous SNV . 0 22 hm5C_associated_SNPs_106799 0 0 0 0 2 TGM4 chr3:44926817 3'AG 44926817 Downstream 90bp
chr3 44926906 44926906 1 + C A rs148245944 44926905 + 44926885 44926925 41 CAAACGAGCAGTCCTGTGTTCCGGCGAGGACAGGTGTTTCA CAAACGAGCAGTCCTGTGTTCAGGCGAGGACAGGTGTTTCA < 41bp 0.498422003319031 0.758275349981876 0.73586345 0.8737911 prediction 0.516550699963752 Functional Gain - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44926905 chr3:44926906 synonymous SNV . 0 22 hm5C_associated_SNPs_106799 0 0 0 0 2 TGM4 chr3:44926990 5'GT 44926990 Upstream 85bp
chr3 136016911 136016911 1 + C A UCEC 136016910 + 136016890 136016930 41 CCGTCCGTGAGTGCCACGATCCCAGGTGGGTTGTAGGCCGG CCGTCCGTGAGTGCCACGATCACAGGTGGGTTGTAGGCCGG < 41bp 0.498555093429254 0.7582711952879 0.260965 0.6121859 prediction 0.516542390575801 Functional Gain - PCCB ENSG00000114054 CDS Human protein_coding chr3:136016910 chr3:136016911 nonsynonymous SNV 0.981 4 22 hm5C_associated_SNPs_106800 0 0 1 0 1 PCCB chr3:136016914 5'GT 136016914 Upstream 4bp
chr5 76714204 76714204 1 + C T UCEC 76714203 + 76714183 76714223 41 ACTGCTGTTCTGGAGAGTCACCACACCGCCCTGGCCTTCCA ACTGCTGTTCTGGAGAGTCACTACACCGCCCTGGCCTTCCA < 41bp 0.509459517589917 0.767728647518013 0.30086267 0.91162515 prediction 0.516538259856193 Functional Gain - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76714203 chr5:76714204 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_106801 0 0 0 0 1 PDE8B chr5:76714271 5'GT 76714271 Upstream 68bp
chr12 132241053 132241053 1 + T G LUSC 132241050 + 132241030 132241070 41 CCAGAAGAGGCTCCCACAGACTCTGCTCCCGAGAAGCCAAG CCAGAAGAGGCTCCCACAGACTCGGCTCCCGAGAAGCCAAG < 41bp 0.359975263574015 0.758266754123619 0.040130883 0.05509317 prediction 0.516533508247238 Functional Gain - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132241050 chr12:132241053 synonymous SNV . 0 24 hm5C_associated_SNPs_106802 0 0 1 0 1 SFSWAP chr12:132241018 3'AG 132241018 Downstream 36bp
chr19 19606629 19606629 1 + T C STAD 19606627 + 19606607 19606647 41 GGTCCGAGGTGGGCAGCAGGCGTCCTCGAAGCTGGGGCCAC GGTCCGAGGTGGGCAGCAGGCGCCCTCGAAGCTGGGGCCAC < 41bp 0.501752469551986 0.760018730787966 0.5769452 0.4171575 prediction 0.51653252247196 Functional Gain - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19606627 chr19:19606629 nonsynonymous SNV 0.652 1 23 hm5C_associated_SNPs_106803 0 0 1 0 2 GATAD2A chr19:19606563 3'AG 19606563 Downstream 67bp
chr19 19606629 19606629 1 + T C STAD 19606627 + 19606607 19606647 41 GGTCCGAGGTGGGCAGCAGGCGTCCTCGAAGCTGGGGCCAC GGTCCGAGGTGGGCAGCAGGCGCCCTCGAAGCTGGGGCCAC < 41bp 0.501752469551986 0.760018730787966 0.5769452 0.4171575 prediction 0.51653252247196 Functional Gain - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19606627 chr19:19606629 nonsynonymous SNV 0.652 1 23 hm5C_associated_SNPs_106803 0 0 1 0 2 GATAD2A chr19:19606694 5'GT 19606694 Upstream 66bp
chr16 56866245 56866245 1 + C T LGG 56866244 + 56866224 56866264 41 TGACGACGATGGCACCAGCTCCCCACAAGACAGGCTCACTC TGACGACGATGGCACCAGCTCTCCACAAGACAGGCTCACTC < 41bp 0.555341879273685 0.813604872374483 0.05860862 0.92192936 prediction 0.516525986201597 Functional Gain - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56866244 chr16:56866245 synonymous SNV . 0 22 hm5C_associated_SNPs_106804 0 0 1 0 2 NUP93 chr16:56866207 3'AG 56866207 Downstream 39bp
chr16 56866245 56866245 1 + C T LGG 56866244 + 56866224 56866264 41 TGACGACGATGGCACCAGCTCCCCACAAGACAGGCTCACTC TGACGACGATGGCACCAGCTCTCCACAAGACAGGCTCACTC < 41bp 0.555341879273685 0.813604872374483 0.05860862 0.92192936 prediction 0.516525986201597 Functional Gain - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56866244 chr16:56866245 synonymous SNV . 0 22 hm5C_associated_SNPs_106804 0 0 1 0 2 NUP93 chr16:56866300 5'GT 56866300 Upstream 56bp
chr8 125015557 125015557 1 + C A LUAD 125015556 + 125015536 125015576 41 CTATGGCCTCCACCACTCACCCGGAGAAGCCACTGGTGACA CTATGGCCTCCACCACTCACCAGGAGAAGCCACTGGTGACA < 41bp 0.504996804868277 0.763256633338061 0.5847018 0.81512606 prediction 0.516519656939568 Functional Gain - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:125015556 chr8:125015557 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_106806 0 0 0 0 1 FER1L6 chr8:125015587 5'GT 125015587 Upstream 31bp
chr3 67048773 67048773 1 + T G rs374067910 67048771 + 67048751 67048791 41 AATAGCTGGAGTCGGGGCCCCATCGAGAAATGGCCGCGTCG AATAGCTGGAGTCGGGGCCCCAGCGAGAAATGGCCGCGTCG < 41bp 0.488514441047027 0.758208455003159 0.3534671 0.8353242 prediction 0.516416910006319 Functional Gain - KBTBD8 ENSG00000163376 UTR5 Human protein_coding chr3:67048771 chr3:67048773 . . 0 23 hm5C_associated_SNPs_106810 0 0 0 0 1 KBTBD8 chr3:67048795 5'GT 67048795 Upstream 23bp
chr5 78416261 78416261 1 + C A UCEC 78416257 + 78416237 78416277 41 TGGTAGCAGGAGGAGTGAGTCAGACACCTTCATACCTTAGC TGGTAGCAGGAGGAGTGAGTCAGAAACCTTCATACCTTAGC < 41bp 0.351515269298727 0.758198829930144 0.63117945 0.8587109 prediction 0.516397659860288 Functional Gain - BHMT ENSG00000145692 CDS Human protein_coding chr5:78416257 chr5:78416261 nonsynonymous SNV 0.957 4 25 hm5C_associated_SNPs_106815 0 0 0 0 1 BHMT chr5:78416173 3'AG 78416173 Downstream 89bp
chr22 29708230 29708230 1 + C G rs200682667 29708226 + 29708206 29708246 41 GGCTGCCTGGGCCCCGAAGCCAAGCCCTTTCCAGCTCCTCC GGCTGCCTGGGCCCCGAAGCCAAGGCCTTTCCAGCTCCTCC < 41bp 0.562638097850926 0.820831215275694 0.26069826 0.19450846 prediction 0.516386234849538 Functional Gain - GAS2L1 ENSG00000185340 CDS Human protein_coding chr22:29708226 chr22:29708230 nonsynonymous SNV 0.969 1 25 hm5C_associated_SNPs_106816 0 0 0 0 1 GAS2L1 chr22:29708132 3'AG 29708132 Downstream 99bp
chr11 111385715 111385715 1 + C A LIHC 111385711 + 111385691 111385731 41 GTCAGCGTCTGCCGGTGGCGCGGCCCAGGAGGAGCAGAGGG GTCAGCGTCTGCCGGTGGCGCGGCACAGGAGGAGCAGAGGG < 41bp 0.654771653169081 0.912963408801685 0.88229847 0.8339219 prediction 0.516383511265207 Functional Gain - C11orf88 ENSG00000183644 CDS Human protein_coding chr11:111385711 chr11:111385715 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_106817 0 0 0 0 1 C11orf88 chr11:111385735 5'GT 111385735 Upstream 21bp
chr17 79637319 79637319 1 + C A SKCM 79637315 + 79637295 79637335 41 GGGAGAGGAGCCCGACATCGCAGTCCCCAAGTTCAAACAGA GGGAGAGGAGCCCGACATCGCAGTACCCAAGTTCAAACAGA < 41bp 0.355495445153562 0.758184407024784 0.32471216 0.34128243 prediction 0.516368814049568 Functional Gain - CCDC137 ENSG00000185298 CDS Human protein_coding chr17:79637315 chr17:79637319 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_106818 0 0 1 0 1 CCDC137 chr17:79637255 3'AG 79637255 Downstream 65bp
chr3 140281700 140281700 1 + T G LIHC 140281697 + 140281677 140281717 41 AGCAGGTGCTACATCACATCCGCTACCGCAACTGGCGTCCG AGCAGGTGCTACATCACATCCGCGACCGCAACTGGCGTCCG < 41bp 0.417122286159357 0.758179930796649 0.25859785 0.5694205 prediction 0.516359861593299 Functional Gain - CLSTN2 ENSG00000158258 CDS Human protein_coding chr3:140281697 chr3:140281700 nonsynonymous SNV 0.957 4 24 hm5C_associated_SNPs_106820 0 0 0 0 2 CLSTN2 chr3:140281653 3'AG 140281653 Downstream 48bp
chr3 140281700 140281700 1 + T G LIHC 140281697 + 140281677 140281717 41 AGCAGGTGCTACATCACATCCGCTACCGCAACTGGCGTCCG AGCAGGTGCTACATCACATCCGCGACCGCAACTGGCGTCCG < 41bp 0.417122286159357 0.758179930796649 0.25859785 0.5694205 prediction 0.516359861593299 Functional Gain - CLSTN2 ENSG00000158258 CDS Human protein_coding chr3:140281697 chr3:140281700 nonsynonymous SNV 0.957 4 24 hm5C_associated_SNPs_106820 0 0 0 0 2 CLSTN2 chr3:140281798 5'GT 140281798 Upstream 99bp
chr2 209271823 209271823 1 + T A BLCA 209271819 + 209271799 209271839 41 TGGGGTTGGCTAATGCTCGGCAGCTGCCTCCTGGCCAGAGC TGGGGTTGGCTAATGCTCGGCAGCAGCCTCCTGGCCAGAGC < 41bp 0.483912979480855 0.75812659652873 0.8627054 0.7914189 prediction 0.51625319305746 Functional Gain - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209271819 chr2:209271823 nonsynonymous SNV 0.011 1 25 hm5C_associated_SNPs_106827 0 0 0 0 1 PTH2R chr2:209271843 5'GT 209271843 Upstream 21bp
chr15 27185194 27185194 1 + C G LUAD 27185193 + 27185173 27185213 41 CAGGTGTCCTTTTGGCTGAACCGGGAATCAGTCCCAGCCAG CAGGTGTCCTTTTGGCTGAACGGGGAATCAGTCCCAGCCAG < 41bp 0.586141581836381 0.844262786460895 0.92356765 0.9218162 prediction 0.516242409249029 Functional Gain - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27185193 chr15:27185194 nonsynonymous SNV 0.975 5 22 hm5C_associated_SNPs_106828 0 0 0 0 1 GABRA5 chr15:27185224 5'GT 27185224 Upstream 31bp
chr16 20441054 20441054 1 + T C LUSC 20441052 + 20441032 20441072 41 CCGGAGGAGAGGCCCTCAACCCTGACGTGAGGGAGAAGTGG CCGGAGGAGAGGCCCTCAACCCCGACGTGAGGGAGAAGTGG < 41bp 0.478200767681861 0.758112833506777 0.046162367 0.05875948 prediction 0.516225667013554 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20441052 chr16:20441054 stoploss . 0 23 hm5C_associated_SNPs_106829 0 0 0 0 2 ACSM5 chr16:20441000 3'AG 20441000 Downstream 55bp
chr16 20441054 20441054 1 + T C LUSC 20441052 + 20441032 20441072 41 CCGGAGGAGAGGCCCTCAACCCTGACGTGAGGGAGAAGTGG CCGGAGGAGAGGCCCTCAACCCCGACGTGAGGGAGAAGTGG < 41bp 0.478200767681861 0.758112833506777 0.046162367 0.05875948 prediction 0.516225667013554 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20441052 chr16:20441054 stoploss . 0 23 hm5C_associated_SNPs_106829 0 0 0 0 2 ACSM5 chr16:20441123 5'GT 20441123 Upstream 70bp
chr7 142637531 142637531 1 + C A LUAD 142637530 + 142637510 142637550 41 ATGGCCCAGCAGGAAGAAGACCAGTCGTCCAAGACGGCAGC ATGGCCCAGCAGGAAGAAGACAAGTCGTCCAAGACGGCAGC < 41bp 0.498644609273799 0.758111672415918 0.25959772 0.1739273 prediction 0.516223344831836 Functional Gain - C7orf34 ENSG00000165131 CDS Human protein_coding chr7:142637530 chr7:142637531 nonsynonymous SNV 0.006 0 22 hm5C_associated_SNPs_106830 0 0 0 0 1 C7orf34 chr7:142637439 3'AG 142637439 Downstream 93bp
chr7 129944402 129944402 1 + C A rs3735051 129944398 + 129944378 129944418 41 ATTGGACATTCGTTTGAAAACCGGCCGATGTATGTACTGAA ATTGGACATTCGTTTGAAAACCGGACGATGTATGTACTGAA < 41bp 0.35247875858756 0.758101320025643 0.27638596 0.21006086 prediction 0.516202640051286 Functional Gain - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129944398 chr7:129944402 nonsynonymous SNV 0.971 0 25 hm5C_associated_SNPs_106831 0 0 0 0 2 CPA4 chr7:129944318 3'AG 129944318 Downstream 85bp
chr7 129944402 129944402 1 + C A rs3735051 129944398 + 129944378 129944418 41 ATTGGACATTCGTTTGAAAACCGGCCGATGTATGTACTGAA ATTGGACATTCGTTTGAAAACCGGACGATGTATGTACTGAA < 41bp 0.35247875858756 0.758101320025643 0.27638596 0.21006086 prediction 0.516202640051286 Functional Gain - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129944398 chr7:129944402 nonsynonymous SNV 0.971 0 25 hm5C_associated_SNPs_106831 0 0 0 0 2 CPA4 chr7:129944419 5'GT 129944419 Upstream 18bp
chr11 66323637 66323637 1 + C G rs146294881 66323636 + 66323616 66323656 41 ACATTGTGAACACCCCAAAGCCGGATGAGAAGGCCATCATG ACATTGTGAACACCCCAAAGCGGGATGAGAAGGCCATCATG < 41bp 0.589742334612477 0.847810517541005 0.5045638 0.9271678 prediction 0.516136365857056 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66323636 chr11:66323637 unknown 0.987 2 22 hm5C_associated_SNPs_106835 0 0 0 0 2 ACTN3 chr11:66323616 3'AG 66323616 Downstream 22bp
chr11 66323637 66323637 1 + C G rs146294881 66323636 + 66323616 66323656 41 ACATTGTGAACACCCCAAAGCCGGATGAGAAGGCCATCATG ACATTGTGAACACCCCAAAGCGGGATGAGAAGGCCATCATG < 41bp 0.589742334612477 0.847810517541005 0.5045638 0.9271678 prediction 0.516136365857056 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66323636 chr11:66323637 unknown 0.987 2 22 hm5C_associated_SNPs_106835 0 0 0 0 2 ACTN3 chr11:66323701 5'GT 66323701 Upstream 65bp
chr16 57762401 57762401 1 + T C rs2923147 57762399 + 57762379 57762419 41 CCCGCCAGGAGAGAAACTAACATGCTGGCAGGCGGTGCGCC CCCGCCAGGAGAGAAACTAACACGCTGGCAGGCGGTGCGCC < 41bp 0.510090504573104 0.768156247725238 0.8822063 0.4903252 prediction 0.516131486304268 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57762399 chr16:57762401 nonsynonymous SNV 0.622 0 23 hm5C_associated_SNPs_106836 0 0 0 0 2 DRC7 chr16:57762302 3'AG 57762302 Downstream 100bp
chr16 57762401 57762401 1 + T C rs2923147 57762399 + 57762379 57762419 41 CCCGCCAGGAGAGAAACTAACATGCTGGCAGGCGGTGCGCC CCCGCCAGGAGAGAAACTAACACGCTGGCAGGCGGTGCGCC < 41bp 0.510090504573104 0.768156247725238 0.8822063 0.4903252 prediction 0.516131486304268 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57762399 chr16:57762401 nonsynonymous SNV 0.622 0 23 hm5C_associated_SNPs_106836 0 0 0 0 2 DRC7 chr16:57762496 5'GT 57762496 Upstream 96bp
chr6 28193085 28193085 1 + C G rs527628225 28193084 + 28193064 28193104 41 CTGCCCGGCCATTGTTCGTGCCGCGCTTCTAGCAACGCCGG CTGCCCGGCCATTGTTCGTGCGGCGCTTCTAGCAACGCCGG < 41bp 0.552848711916429 0.810904594188958 0.27136886 0.66591334 prediction 0.516111764545059 Functional Gain - ZSCAN9 ENSG00000137185 UTR5 Human protein_coding chr6:28193084 chr6:28193085 . . 0 22 hm5C_associated_SNPs_106837 0 0 1 0 2 ZSCAN9 chr6:28193108 5'GT 28193108 Upstream 24bp
chr6 28193085 28193085 1 + C G rs527628225 28193084 + 28193064 28193104 41 CTGCCCGGCCATTGTTCGTGCCGCGCTTCTAGCAACGCCGG CTGCCCGGCCATTGTTCGTGCGGCGCTTCTAGCAACGCCGG < 41bp 0.552848711916429 0.810904594188958 0.27136886 0.66591334 prediction 0.516111764545059 Functional Gain - ZSCAN9 ENSG00000137185 UTR5 Human protein_coding chr6:28193084 chr6:28193085 . . 0 22 hm5C_associated_SNPs_106837 0 0 1 0 2 ZSCAN9 chr6:28193144 5'GT 28193144 Upstream 60bp
chr17 4686436 4686436 1 + C G rs199835269 4686435 + 4686415 4686455 41 CCTCACTGAGGCTCCACTGACCGCCGGGTTACACCTGCTCC CCTCACTGAGGCTCCACTGACGGCCGGGTTACACCTGCTCC < 41bp 0.465780955419014 0.75804004920772 0.4053605 0.88538986 prediction 0.516080098415439 Functional Gain - TM4SF5 ENSG00000142484 UTR3 Human protein_coding chr17:4686435 chr17:4686436 . . 0 22 hm5C_associated_SNPs_106839 0 0 1 0 1 TM4SF5 chr17:4686409 3'AG 4686409 Downstream 28bp
chr3 52246435 52246435 1 + T C LAML 52246433 + 52246413 52246453 41 CCCAGATGATGAACTACTTCCTTGGTGAGTACCTGGGGAGC CCCAGATGATGAACTACTTCCTCGGTGAGTACCTGGGGAGC < 41bp 0.513984564118399 0.772011657717676 0.5235168 0.44819072 prediction 0.516054187198553 Functional Gain - ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52246433 chr3:52246435 synonymous SNV . 0 23 hm5C_associated_SNPs_106840 0 0 1 0 1 ALAS1 chr3:52246436 5'GT 52246436 Upstream 2bp
chr16 31435837 31435837 1 + T C LAML 31435835 + 31435815 31435855 41 GTCTACAATGCCATTCCCATCATCATGGGCAGCTCTGTGGG GTCTACAATGCCATTCCCATCACCATGGGCAGCTCTGTGGG < 41bp 0.488051228532326 0.758014488864511 0.41200852 0.51402694 prediction 0.516028977729023 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31435835 chr16:31435837 nonsynonymous SNV 0.013 2 23 hm5C_associated_SNPs_106843 0 0 0 0 1 ITGAD chr16:31435788 3'AG 31435788 Downstream 50bp
chr6 33402968 33402968 1 + T G OV 33402966 + 33402946 33402986 41 GCTTTAAGGAGTCACACTCTCATGAGTCCTTGCTGAGTCCT GCTTTAAGGAGTCACACTCTCAGGAGTCCTTGCTGAGTCCT < 41bp 0.621734148909747 0.879746313382209 0.253647 0.9352283 prediction 0.516024328944924 Functional Gain - SYNGAP1 ENSG00000197283 CDS Human protein_coding chr6:33402966 chr6:33402968 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_106844 0 0 1 0 1 SYNGAP1 chr6:33402929 3'AG 33402929 Downstream 40bp
chr2 1418211 1418211 1 + C G OV 1418207 + 1418187 1418227 41 GCGCTCGCTGTGCTGTCTGTCACGCTGGTTATGGCCTGCAC GCGCTCGCTGTGCTGTCTGTCACGGTGGTTATGGCCTGCAC < 41bp 0.464176205849171 0.758012143984549 0.09227267 0.25929594 prediction 0.516024287969099 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1418207 chr2:1418211 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_106845 0 0 0 0 1 TPO chr2:1418274 5'GT 1418274 Upstream 64bp
chr7 129122857 129122857 1 + C T SKCM 129122856 + 129122836 129122876 41 ATTTACCAGAAAGTGCGTCACCGCATGAACGATGACTGGGC ATTTACCAGAAAGTGCGTCACTGCATGAACGATGACTGGGC < 41bp 0.516756579250602 0.774757065438072 0.22897497 0.44834378 prediction 0.51600097237494 Functional Gain - STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129122856 chr7:129122857 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_106847 0 0 0 0 1 STRIP2 chr7:129122887 5'GT 129122887 Upstream 31bp
chr3 31674613 31674613 1 + C T SKCM 31674612 + 31674592 31674632 41 CCTCGAGTCACCAACATTTTCCCAAAACAGAAGTATTTGTC CCTCGAGTCACCAACATTTTCTCAAAACAGAAGTATTTGTC < 41bp 0.511900877120134 0.769900436224251 0.047498494 0.07950258 prediction 0.515999118208234 Functional Gain - STT3B ENSG00000163527 CDS Human protein_coding chr3:31674612 chr3:31674613 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_106848 0 0 1 0 1 STT3B chr3:31674639 5'GT 31674639 Upstream 27bp
chr11 61727485 61727485 1 + C A rs17854138 61727481 + 61727461 61727501 41 CTGCTTCCGCCCAGTTCCGTCGAGCCTCCTTTATGGGCTCC CTGCTTCCGCCCAGTTCCGTCGAGACTCCTTTATGGGCTCC < 41bp 0.37434490969422 0.75799425343724 0.15261322 0.2914576 prediction 0.51598850687448 Functional Gain - BEST1 ENSG00000167995 CDS Human protein_coding chr11:61727481 chr11:61727485 nonsynonymous SNV 0.094 1 25 hm5C_associated_SNPs_106849 0 0 0 0 1 BEST1 chr11:61727515 5'GT 61727515 Upstream 31bp
chr4 1374774 1374774 1 + C G rs28522910 1374773 + 1374753 1374793 41 AGCTGCAGAAGCAGGAGCGCCCGGGTAGGTCTGGGCAAGGC AGCTGCAGAAGCAGGAGCGCCGGGGTAGGTCTGGGCAAGGC < 41bp 0.587593668486198 0.845566967903763 0.7876622 0.8875164 prediction 0.515946598835129 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1374773 chr4:1374774 nonsynonymous SNV 0.008 2 22 hm5C_associated_SNPs_106852 0 0 1 0 1 UVSSA chr4:1374776 5'GT 1374776 Upstream 3bp
chr17 46972655 46972655 1 + C A GBM 46972651 + 46972631 46972671 41 TGGTGTGGCTGGTTCAGGGGCTGGCATTGGAACCGTGTTTG TGGTGTGGCTGGTTCAGGGGCTGGAATTGGAACCGTGTTTG < 41bp 0.666037114734971 0.924008576980885 0.2754212 0.41895628 prediction 0.515942924491829 Functional Gain - ATP5G1 ENSG00000159199 CDS Human protein_coding chr17:46972651 chr17:46972655 synonymous SNV . 0 25 hm5C_associated_SNPs_106853 0 0 1 0 1 ATP5G1 chr17:46972696 5'GT 46972696 Upstream 42bp
chr14 23239013 23239013 1 + C G LUAD 23239012 + 23238992 23239032 41 TTTTCCAGGTACAGTCTTTGCCCGCTGCCTGATTTTTCCTC TTTTCCAGGTACAGTCTTTGCGCGCTGCCTGATTTTTCCTC < 41bp 0.445556972041167 0.757963781025437 0.041772217 0.043050498 prediction 0.515927562050873 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23239012 chr14:23239013 synonymous SNV . 0 22 hm5C_associated_SNPs_106854 0 0 1 0 1 OXA1L chr14:23239000 3'AG 23239000 Downstream 14bp
chr10 47756066 47756066 1 + C G rs142447427 47756065 + 47756045 47756085 41 GATGTGAGCAGCTTTGTGGACCCGGCACTGGCCCTCCAAGA GATGTGAGCAGCTTTGTGGACGCGGCACTGGCCCTCCAAGA < 41bp 0.597707916838719 0.85566647263767 0.29915428 0.52336127 prediction 0.515917111597902 Functional Gain - ANXA8L1 ENSG00000186807 CDS Human other chr10:47756065 chr10:47756066 nonsynonymous SNV 0.775 1 22 hm5C_associated_SNPs_106856 0 0 0 0 2 ANXA8L1 chr10:47756033 3'AG 47756033 Downstream 34bp
chr10 47756066 47756066 1 + C G rs142447427 47756065 + 47756045 47756085 41 GATGTGAGCAGCTTTGTGGACCCGGCACTGGCCCTCCAAGA GATGTGAGCAGCTTTGTGGACGCGGCACTGGCCCTCCAAGA < 41bp 0.597707916838719 0.85566647263767 0.29915428 0.52336127 prediction 0.515917111597902 Functional Gain - ANXA8L1 ENSG00000186807 CDS Human other chr10:47756065 chr10:47756066 nonsynonymous SNV 0.775 1 22 hm5C_associated_SNPs_106856 0 0 0 0 2 ANXA8L1 chr10:47756092 5'GT 47756092 Upstream 27bp
chr3 183957289 183957289 1 + C A OV 183957288 + 183957268 183957308 41 AAACCAAGTCCCCGGCCGACCCCGGAAACCCTCTTTGGGTG AAACCAAGTCCCCGGCCGACCACGGAAACCCTCTTTGGGTG < 41bp 0.495100821911922 0.757958326867995 0.259593 0.3520585 prediction 0.51591665373599 Functional Gain - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183957288 chr3:183957289 synonymous SNV . 0 22 hm5C_associated_SNPs_106857 0 0 0 0 1 VWA5B2 chr3:183957371 5'GT 183957371 Upstream 83bp
chr20 43246949 43246949 1 + C G BLCA 43246948 + 43246928 43246968 41 GGACAGGTGGAGGGAAGCGCCCCAGACAAGGAAGCTGGCAA GGACAGGTGGAGGGAAGCGCCGCAGACAAGGAAGCTGGCAA < 41bp 0.45756758955348 0.757930803845084 0.21725538 0.4285536 prediction 0.515861607690169 Functional Gain - PKIG ENSG00000168734 CDS Human protein_coding chr20:43246948 chr20:43246949 nonsynonymous SNV 0.252 0 22 hm5C_associated_SNPs_106860 0 0 0 0 1 PKIG chr20:43246926 3'AG 43246926 Downstream 24bp
chr3 69987151 69987151 1 + C T STAD 69987150 + 69987130 69987170 41 CGGTGCCGGGGAGCAGCGCACCCAACAGCCCCATGGCTATG CGGTGCCGGGGAGCAGCGCACTCAACAGCCCCATGGCTATG < 41bp 0.510954187343817 0.76888332714993 0.10324994 0.16477883 prediction 0.515858279612227 Functional Gain - MITF ENSG00000187098 CDS Human protein_coding chr3:69987150 chr3:69987151 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_106861 0 0 1 0 1 MITF chr3:69987200 5'GT 69987200 Upstream 50bp
chr12 113402086 113402086 1 + T C UCEC 113402084 + 113402064 113402104 41 GCTGGGGACCTTGACAAGTTCATCAGTGAATTTCTCCAGCC GCTGGGGACCTTGACAAGTTCACCAGTGAATTTCTCCAGCC < 41bp 0.54381310800779 0.801739091621686 0.051415265 0.071626544 prediction 0.515851967227793 Functional Gain - OAS3 ENSG00000111331 CDS Human protein_coding chr12:113402084 chr12:113402086 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106862 0 0 0 0 1 OAS3 chr12:113402040 3'AG 113402040 Downstream 47bp
chr16 88061163 88061163 1 + C T COAD 88061162 + 88061142 88061182 41 CAGAGCATCGACTCCAAGTGCCGCACGGCGTGGCGGCGCAA CAGAGCATCGACTCCAAGTGCTGCACGGCGTGGCGGCGCAA < 41bp 0.501152176352119 0.759076625230876 0.10087192 0.144036 prediction 0.515848897757515 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88061162 chr16:88061163 nonsynonymous SNV 0.981 4 22 hm5C_associated_SNPs_106863 0 0 1 0 2 BANP chr16:88061089 3'AG 88061089 Downstream 75bp
chr16 88061163 88061163 1 + C T COAD 88061162 + 88061142 88061182 41 CAGAGCATCGACTCCAAGTGCCGCACGGCGTGGCGGCGCAA CAGAGCATCGACTCCAAGTGCTGCACGGCGTGGCGGCGCAA < 41bp 0.501152176352119 0.759076625230876 0.10087192 0.144036 prediction 0.515848897757515 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88061162 chr16:88061163 nonsynonymous SNV 0.981 4 22 hm5C_associated_SNPs_106863 0 0 1 0 2 BANP chr16:88061256 5'GT 88061256 Upstream 94bp
chr11 55653245 55653245 1 + C A LUAD 55653244 + 55653224 55653264 41 ACAAGAGCCTGCTCTGTTTGCCGTGCTCCAACTCTCAGGAG ACAAGAGCCTGCTCTGTTTGCAGTGCTCCAACTCTCAGGAG < 41bp 0.49966083971092 0.757923882916426 0.22487152 0.2745106 prediction 0.515847765832852 Functional Gain - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55653244 chr11:55653245 nonsynonymous SNV 0.065 0 22 hm5C_associated_SNPs_106864 0 0 0 0 1 TRIM51 chr11:55653315 5'GT 55653315 Upstream 71bp
chr12 104473259 104473259 1 + T C UCEC 104473257 + 104473237 104473277 41 TTTATGAGTTGGAGCTACAGCATGGCTCTGGTGTTGTGGGT TTTATGAGTTGGAGCTACAGCACGGCTCTGGTGTTGTGGGT < 41bp 0.49216563720658 0.757916506966344 0.0973168 0.11395216 prediction 0.515833013932688 Functional Gain - HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104473257 chr12:104473259 synonymous SNV . 0 23 hm5C_associated_SNPs_106866 0 0 1 0 1 HCFC2 chr12:104473223 3'AG 104473223 Downstream 37bp
chr16 28913653 28913653 1 + C T BLCA 28913652 + 28913632 28913672 41 ATGGACCGCCCCCCCCGGAGCCCCAAGGAGCCCCTCATCAG ATGGACCGCCCCCCCCGGAGCTCCAAGGAGCCCCTCATCAG < 41bp 0.480990654882647 0.757905314343888 0.12850744 0.8109748 prediction 0.515810628687776 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28913652 chr16:28913653 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_106870 0 0 0 0 1 ATP2A1 chr16:28913707 5'GT 28913707 Upstream 55bp
chr16 76523688 76523688 1 + T C LIHC 76523686 + 76523666 76523706 41 TTTTTCGAGTATGTGGCCAGCATGGAGCAACTTCAGGCCAC TTTTTCGAGTATGTGGCCAGCACGGAGCAACTTCAGGCCAC < 41bp 0.498785332969162 0.757887076722804 0.6186476 0.65910846 prediction 0.515774153445607 Functional Gain - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76523686 chr16:76523688 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_106873 0 0 0 0 1 CNTNAP4 chr16:76523780 5'GT 76523780 Upstream 93bp
chr2 238434337 238434337 1 + C A HNSC 238434333 + 238434313 238434353 41 ACTGGGGCCTCTGGGTGCCACTCCCATCCGGAAGAGCAGCC ACTGGGGCCTCTGGGTGCCACTCCAATCCGGAAGAGCAGCC < 41bp 0.328457980025528 0.757887011706858 0.38481864 0.9572997 prediction 0.515774023413716 Functional Gain - MLPH ENSG00000115648 CDS Human protein_coding chr2:238434333 chr2:238434337 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_106874 0 0 0 0 1 MLPH chr2:238434244 3'AG 238434244 Downstream 94bp
chr3 138668400 138668400 1 + T G rs72976938 138668398 + 138668378 138668418 41 GAAGAAGAGGATGCCTGATGCGTGCACCCTGGGAAGGGCTG GAAGAAGAGGATGCCTGATGCGGGCACCCTGGGAAGGGCTG < 41bp 0.401095923354692 0.757880341345106 0.23660672 0.89534533 prediction 0.515760682690213 Functional Gain - FOXL2NB ENSG00000206262 CDS Human protein_coding chr3:138668398 chr3:138668400 nonsynonymous SNV 0.005 1 23 hm5C_associated_SNPs_106875 0 0 0 0 2 FOXL2NB chr3:138668354 3'AG 138668354 Downstream 47bp
chr3 138668400 138668400 1 + T G rs72976938 138668398 + 138668378 138668418 41 GAAGAAGAGGATGCCTGATGCGTGCACCCTGGGAAGGGCTG GAAGAAGAGGATGCCTGATGCGGGCACCCTGGGAAGGGCTG < 41bp 0.401095923354692 0.757880341345106 0.23660672 0.89534533 prediction 0.515760682690213 Functional Gain - FOXL2NB ENSG00000206262 CDS Human protein_coding chr3:138668398 chr3:138668400 nonsynonymous SNV 0.005 1 23 hm5C_associated_SNPs_106875 0 0 0 0 2 FOXL2NB chr3:138668362 3'AG 138668362 Downstream 39bp
chr1 171250044 171250044 1 + C T rs742350 171250043 + 171250023 171250063 41 GTTGAGAAATTCCCTCCCAACCCCAATTGTGACTTGGTTGA GTTGAGAAATTCCCTCCCAACTCCAATTGTGACTTGGTTGA < 41bp 0.515094171527297 0.772964274299733 0.048010796 0.9561015 prediction 0.515740205544872 Functional Gain - FMO1 ENSG00000010932 CDS Human protein_coding chr1:171250043 chr1:171250044 synonymous SNV . 0 22 hm5C_associated_SNPs_106876 0 0 0 0 1 FMO1 chr1:171250124 5'GT 171250124 Upstream 81bp
chr6 43041648 43041648 1 + T C KIRP 43041646 + 43041626 43041666 41 GTTTTCCATTGTAGCAGCAACATGAAGCGAGCAGCCTCCTT GTTTTCCATTGTAGCAGCAACACGAAGCGAGCAGCCTCCTT < 41bp 0.510300693570148 0.768167900060207 0.09210494 0.110260874 prediction 0.515734412980118 Functional Gain - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43041646 chr6:43041648 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_106877 0 0 1 0 2 KLC4 chr6:43041640 3'AG 43041640 Downstream 9bp
chr6 43041648 43041648 1 + T C KIRP 43041646 + 43041626 43041666 41 GTTTTCCATTGTAGCAGCAACATGAAGCGAGCAGCCTCCTT GTTTTCCATTGTAGCAGCAACACGAAGCGAGCAGCCTCCTT < 41bp 0.510300693570148 0.768167900060207 0.09210494 0.110260874 prediction 0.515734412980118 Functional Gain - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43041646 chr6:43041648 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_106877 0 0 1 0 2 KLC4 chr6:43041703 5'GT 43041703 Upstream 56bp
chr16 50733483 50733483 1 + T G CHOL 50733481 + 50733461 50733501 41 GTCTCAGGGTCCCTGGAAGGCTTCGAGAGTGTCCTGGACTG GTCTCAGGGTCCCTGGAAGGCTGCGAGAGTGTCCTGGACTG < 41bp 0.609825658555112 0.867685950202501 0.3120341 0.39535332 prediction 0.515720583294778 Functional Gain - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50733481 chr16:50733483 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_106878 0 0 0 0 1 NOD2 chr16:50733399 3'AG 50733399 Downstream 85bp
chr1 148932902 148932902 1 + C A HNSC 148932898 + 148932878 148932918 41 TGAGGTACAGGCTCAGTCTGCGGCCAAGACTCCGTCCTGCA TGAGGTACAGGCTCAGTCTGCGGCAAAGACTCCGTCCTGCA < 41bp 0.655190086971787 0.913048228573976 0.62449986 0.5513727 prediction 0.515716283204379 Functional Gain - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932898 chr1:148932902 . . 0 25 hm5C_associated_SNPs_106879 0 0 0 1 1 LOC645166 chr1:148932920 5'GT 148932920 Upstream 19bp
chr10 99995212 99995212 1 + T C LUAD 99995210 + 99995190 99995230 41 GCGTTGGGTATTAAACACACCATGGTGAAGATTCGTCCCTT GCGTTGGGTATTAAACACACCACGGTGAAGATTCGTCCCTT < 41bp 0.509948898242823 0.767799762349526 0.036452204 0.038871914 prediction 0.515701728213405 Functional Gain - R3HCC1L ENSG00000166024 CDS Human protein_coding chr10:99995210 chr10:99995212 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106880 0 0 1 0 2 R3HCC1L chr10:99995182 3'AG 99995182 Downstream 31bp
chr10 99995212 99995212 1 + T C LUAD 99995210 + 99995190 99995230 41 GCGTTGGGTATTAAACACACCATGGTGAAGATTCGTCCCTT GCGTTGGGTATTAAACACACCACGGTGAAGATTCGTCCCTT < 41bp 0.509948898242823 0.767799762349526 0.036452204 0.038871914 prediction 0.515701728213405 Functional Gain - R3HCC1L ENSG00000166024 CDS Human protein_coding chr10:99995210 chr10:99995212 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106880 0 0 1 0 2 R3HCC1L chr10:99995277 5'GT 99995277 Upstream 66bp
chr19 13928067 13928067 1 + C G rs139676736 13928066 + 13928046 13928086 41 CTCCACCTGCATCACCAACACCGAAGGATGGGTGGGGCACC CTCCACCTGCATCACCAACACGGAAGGATGGGTGGGGCACC < 41bp 0.601265052013974 0.859111880413623 0.34304506 0.7650157 prediction 0.515693656799297 Functional Gain - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13928066 chr19:13928067 synonymous SNV . 0 22 hm5C_associated_SNPs_106882 0 0 0 0 1 ZSWIM4 chr19:13928030 3'AG 13928030 Downstream 38bp
chr7 121650423 121650423 1 + T G UCEC 121650420 + 121650400 121650440 41 GGAAAAGACATTGAAGAAGGCGCTATTGTGAATCCTGGTAG GGAAAAGACATTGAAGAAGGCGCGATTGTGAATCCTGGTAG < 41bp 0.394410651493312 0.757821004157056 0.40419394 0.435157 prediction 0.515642008314111 Functional Gain - PTPRZ1 ENSG00000106278 CDS Human protein_coding chr7:121650420 chr7:121650423 synonymous SNV . 0 24 hm5C_associated_SNPs_106888 0 0 0 0 1 PTPRZ1 chr7:121650388 3'AG 121650388 Downstream 36bp
chr8 124989778 124989778 1 + T G OV 124989776 + 124989756 124989796 41 CAGGTGTGGGATGAAGGCAGCATGAATGACGTAGCCCTGGC CAGGTGTGGGATGAAGGCAGCAGGAATGACGTAGCCCTGGC < 41bp 0.422806500055928 0.757775894363528 0.35169044 0.8837682 prediction 0.515551788727056 Functional Gain - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:124989776 chr8:124989778 nonsynonymous SNV 0.815 1 23 hm5C_associated_SNPs_106895 0 0 0 0 1 FER1L6 chr8:124989849 5'GT 124989849 Upstream 72bp
chrX 49179719 49179719 1 + C G rs6520418 49179718 + 49179698 49179738 41 ATTATTGGCCTAGACCAAGACCCTATGTACAGCCTCCTGAA ATTATTGGCCTAGACCAAGACGCTATGTACAGCCTCCTGAA < 41bp 0.453000072709636 0.757767780294954 0.15779871 0.14298943 prediction 0.515535560589908 Functional Gain - GAGE12J ENSG00000224659 CDS Human protein_coding chrX:49179718 chrX:49179719 nonsynonymous SNV 0.009 0 22 hm5C_associated_SNPs_106897 0 0 0 0 1 GAGE12J chrX:49179756 5'GT 49179756 Upstream 38bp
chr11 59857211 59857211 1 + T C SARC 59857209 + 59857189 59857229 41 AATATCTCCCCAGGAAGTATCTTCAGGCAGACTATTGAAGT AATATCTCCCCAGGAAGTATCTCCAGGCAGACTATTGAAGT < 41bp 0.550523945228844 0.808285192662314 0.20146707 0.94567776 prediction 0.51552249486694 Functional Gain - MS4A2 ENSG00000149534 CDS Human protein_coding chr11:59857209 chr11:59857211 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_106900 0 0 0 0 1 MS4A2 chr11:59857294 5'GT 59857294 Upstream 84bp
chr9 131262415 131262415 1 + C A rs144331164 131262411 + 131262391 131262431 41 CTGGAGCAGTCCGAGAGCACCAACCGCAGCATGCAGAACTA CTGGAGCAGTCCGAGAGCACCAACAGCAGCATGCAGAACTA < 41bp 0.376397519153319 0.757712637789297 0.19062072 0.16269335 prediction 0.515425275578594 Functional Gain - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131262411 chr9:131262415 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_106905 0 0 1 0 1 ODF2 chr9:131262346 3'AG 131262346 Downstream 70bp
chr1 27720353 27720353 1 + C A rs11586015 27720349 + 27720329 27720369 41 GGCCTGGCTCTCAGCTGGCTCAGGCAACGTGAATGTAAGCA GGCCTGGCTCTCAGCTGGCTCAGGAAACGTGAATGTAAGCA < 41bp 0.648836057646593 0.906526684760397 0.6204571 0.8535758 prediction 0.515381254227607 Functional Gain - GPR3 ENSG00000181773 CDS Human protein_coding chr1:27720349 chr1:27720353 synonymous SNV . 0 25 hm5C_associated_SNPs_106910 0 0 0 0 1 GPR3 chr1:27720298 3'AG 27720298 Downstream 56bp
chr6 46802344 46802344 1 + C A LUAD 46802340 + 46802320 46802360 41 AATGACACTGTCATCTGGGACAGGCCGTCCAGGGTGGGAAC AATGACACTGTCATCTGGGACAGGACGTCCAGGGTGGGAAC < 41bp 0.357082200784491 0.757676727385504 0.097611785 0.21450797 prediction 0.515353454771007 Functional Gain - MEP1A ENSG00000112818 CDS Human protein_coding chr6:46802340 chr6:46802344 nonsynonymous SNV 0.959 4 25 hm5C_associated_SNPs_106913 0 0 0 0 1 MEP1A chr6:46802315 3'AG 46802315 Downstream 30bp
chrX 47098764 47098764 1 + C G SKCM 47098760 + 47098740 47098780 41 CGCCCCACAGATGAGATAAACTGGCGCCTCAAGGAGGGACT CGCCCCACAGATGAGATAAACTGGGGCCTCAAGGAGGGACT < 41bp 0.56426281628002 0.821930418943902 0.90860736 0.93054986 prediction 0.515335205327764 Functional Gain - USP11 ENSG00000102226 CDS Human protein_coding chrX:47098760 chrX:47098764 nonsynonymous SNV 0.923 0 25 hm5C_associated_SNPs_106916 0 0 1 0 1 USP11 chrX:47098750 3'AG 47098750 Downstream 15bp
chr17 18110256 18110256 1 + C T CESC 18110255 + 18110235 18110275 41 CTGAAACCCAAGCGGTCCCACCGCAAGGCAGACCCTGATGC CTGAAACCCAAGCGGTCCCACTGCAAGGCAGACCCTGATGC < 41bp 0.518619208248045 0.776282196892847 0.0645636 0.082157284 prediction 0.515325977289605 Functional Gain - ALKBH5 ENSG00000091542 CDS Human protein_coding chr17:18110255 chr17:18110256 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_106917 0 0 1 1 1 ALKBH5 chr17:18110284 5'GT 18110284 Upstream 29bp
chr1 158325653 158325653 1 + C G BRCA 158325652 + 158325632 158325672 41 GGCTGTCCTGTGGCCCCAGTCCTGGCCCTGGCCGTCTGCAG GGCTGTCCTGTGGCCCCAGTCGTGGCCCTGGCCGTCTGCAG < 41bp 0.55018539664833 0.807835693142338 0.69551426 0.9117236 prediction 0.515300592988017 Functional Gain - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325652 chr1:158325653 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_106919 0 0 0 0 1 CD1E chr1:158325730 5'GT 158325730 Upstream 78bp
chr5 12575102 12575102 1 + C G rs377430425 12575101 + 12575081 12575121 41 GAGCCCAGGCAGAGGAGGCGCCGAGAGCGAGCGAGGGCTGC GAGCCCAGGCAGAGGAGGCGCGGAGAGCGAGCGAGGGCTGC < 41bp 0.473013446971104 0.757638211561572 0.27997643 0.5887407 prediction 0.515276423123143 Functional Gain - LINC01194 ENSG00000248131 ncRNA_exonic Human lincRNA chr5:12575101 chr5:12575102 . . 0 22 hm5C_associated_SNPs_106922 0 0 0 0 1 LINC01194 chr5:12575164 5'GT 12575164 Upstream 63bp
chr16 68087509 68087509 1 + T A BRCA 68087505 + 68087485 68087525 41 ACTTTGTCGCCCCTGATGATCGAGTTGTCTTCCGCACCTGT ACTTTGTCGCCCCTGATGATCGAGATGTCTTCCGCACCTGT < 41bp 0.608248628709252 0.865882404495058 0.90145147 0.93241894 prediction 0.515267551571612 Functional Gain - DUS2 ENSG00000167264 CDS Human protein_coding chr16:68087505 chr16:68087509 nonsynonymous SNV 0.930 4 25 hm5C_associated_SNPs_106924 0 0 1 0 2 DUS2 chr16:68087467 3'AG 68087467 Downstream 43bp
chr16 68087509 68087509 1 + T A BRCA 68087505 + 68087485 68087525 41 ACTTTGTCGCCCCTGATGATCGAGTTGTCTTCCGCACCTGT ACTTTGTCGCCCCTGATGATCGAGATGTCTTCCGCACCTGT < 41bp 0.608248628709252 0.865882404495058 0.90145147 0.93241894 prediction 0.515267551571612 Functional Gain - DUS2 ENSG00000167264 CDS Human protein_coding chr16:68087505 chr16:68087509 nonsynonymous SNV 0.930 4 25 hm5C_associated_SNPs_106924 0 0 1 0 2 DUS2 chr16:68087558 5'GT 68087558 Upstream 50bp
chr17 7983166 7983166 1 - A T PRAD 7983170 - 7983150 7983190 41 GCCTGATCCGCCGCTGCACGCGGATCCCAGACAAGTTCCCC GCCTGATCCGCCGCTGCACGCGGAACCCAGACAAGTTCCCC < 41bp 0.597086023310246 0.854706107912155 0.23154402 0.36235026 prediction 0.515240169203817 Functional Gain - ALOX12B ENSG00000179477 CDS Human protein_coding chr17:7983170 chr17:7983166 nonsynonymous SNV 0.957 2 25 hm5C_associated_SNPs_106927 0 0 0 0 1 ALOX12B chr17:7983087 5'GT 7983087 Upstream 80bp
chr20 61467564 61467564 1 + C G rs142066316 61467563 + 61467543 61467583 41 GCAGTCGAGGGGAGCTGGGCCCCAAAGGCACCCAGGGTCCC GCAGTCGAGGGGAGCTGGGCCGCAAAGGCACCCAGGGTCCC < 41bp 0.449918335601741 0.757594283656117 0.13736469 0.3616957 prediction 0.515188567312235 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61467563 chr20:61467564 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_106930 2 0 1 0 1 COL9A3 chr20:61467539 3'AG 61467539 Downstream 26bp
chr11 93530729 93530729 1 + T C STAD 93530727 + 93530707 93530747 41 AAACAGACCTTGAGTTCCATCATGATGCCTCATCCAGCAAG AAACAGACCTTGAGTTCCATCACGATGCCTCATCCAGCAAG < 41bp 0.55982529096971 0.817414469294052 0.11340773 0.096176416 prediction 0.515178356648683 Functional Gain - MED17 ENSG00000042429 CDS Human protein_coding chr11:93530727 chr11:93530729 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_106931 0 0 1 0 1 MED17 chr11:93530701 3'AG 93530701 Downstream 29bp
chr16 31426257 31426257 1 + C T LUSC 31426256 + 31426236 31426276 41 TGAGAGAGCCCATCCCCTCCCCCCAGAACCTGCGTCCTGTG TGAGAGAGCCCATCCCCTCCCTCCAGAACCTGCGTCCTGTG < 41bp 0.488655464659777 0.757583267378139 0.10023439 0.93562466 prediction 0.515166534756277 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31426256 chr16:31426257 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_106932 0 0 0 0 2 ITGAD chr16:31426181 3'AG 31426181 Downstream 77bp
chr16 31426257 31426257 1 + C T LUSC 31426256 + 31426236 31426276 41 TGAGAGAGCCCATCCCCTCCCCCCAGAACCTGCGTCCTGTG TGAGAGAGCCCATCCCCTCCCTCCAGAACCTGCGTCCTGTG < 41bp 0.488655464659777 0.757583267378139 0.10023439 0.93562466 prediction 0.515166534756277 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31426256 chr16:31426257 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_106932 0 0 0 0 2 ITGAD chr16:31426312 5'GT 31426312 Upstream 56bp
chr3 20161148 20161148 1 + T G BLCA 20161146 + 20161126 20161166 41 ACAATTCAACCTCATCTTCCCTTGAGCAGCCAAACGCAGGG ACAATTCAACCTCATCTTCCCTGGAGCAGCCAAACGCAGGG < 41bp 0.622332220057154 0.879904751094425 0.06173134 0.18095133 prediction 0.515145062074542 Functional Gain - KAT2B ENSG00000114166 CDS Human protein_coding chr3:20161146 chr3:20161148 synonymous SNV . 0 23 hm5C_associated_SNPs_106934 0 0 1 0 2 KAT2B chr3:20161090 3'AG 20161090 Downstream 59bp
chr3 20161148 20161148 1 + T G BLCA 20161146 + 20161126 20161166 41 ACAATTCAACCTCATCTTCCCTTGAGCAGCCAAACGCAGGG ACAATTCAACCTCATCTTCCCTGGAGCAGCCAAACGCAGGG < 41bp 0.622332220057154 0.879904751094425 0.06173134 0.18095133 prediction 0.515145062074542 Functional Gain - KAT2B ENSG00000114166 CDS Human protein_coding chr3:20161146 chr3:20161148 synonymous SNV . 0 23 hm5C_associated_SNPs_106934 0 0 1 0 2 KAT2B chr3:20161215 5'GT 20161215 Upstream 68bp
chr1 41012330 41012330 1 + C A UCEC 41012326 + 41012306 41012346 41 TGCTCACATTCAATAAAATTCTGACTATGGAGAGAATCCAC TGCTCACATTCAATAAAATTCTGAATATGGAGAGAATCCAC < 41bp 0.370531108256349 0.757566337277798 0.099822134 0.108635515 prediction 0.515132674555596 Functional Gain - ZNF684 ENSG00000117010 CDS Human protein_coding chr1:41012326 chr1:41012330 nonsynonymous SNV 0.221 0 25 hm5C_associated_SNPs_106935 0 0 1 0 1 ZNF684 chr1:41012234 3'AG 41012234 Downstream 97bp
chr1 1222503 1222503 1 + C A rs143433846 1222499 + 1222479 1222519 41 CCTCTCCCAGTGCAACAGCACGGGCGGCGACTGCTTTTACC CCTCTCCCAGTGCAACAGCACGGGAGGCGACTGCTTTTACC < 41bp 0.650540696384191 0.90810631495601 0.7717056 0.8696209 prediction 0.515131237143637 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1222499 chr1:1222503 synonymous SNV . 0 25 hm5C_associated_SNPs_106936 0 0 0 0 1 SCNN1D chr1:1222489 3'AG 1222489 Downstream 15bp
chr12 4796133 4796133 1 + C A rs549509637 4796129 + 4796109 4796149 41 CATCACAGACATGAAATTGCCTCACCTGCCTGGCTTAGAAG CATCACAGACATGAAATTGCCTCAACTGCCTGGCTTAGAAG < 41bp 0.341252041367813 0.757521953876128 0.03903207 0.068908304 prediction 0.515043907752255 Functional Gain - NDUFA9 ENSG00000139180 CDS Human protein_coding chr12:4796129 chr12:4796133 nonsynonymous SNV 0.248 0 25 hm5C_associated_SNPs_106938 0 0 1 0 1 NDUFA9 chr12:4796104 3'AG 4796104 Downstream 30bp
chr9 140507480 140507480 1 + C G rs62622789 140507479 + 140507459 140507499 41 GTAAGTTTGGGAGCCAGTTCCCGAGTGGTGACCCCTGGGGG GTAAGTTTGGGAGCCAGTTCCGGAGTGGTGACCCCTGGGGG < 41bp 0.446110594070637 0.757505692337066 0.80389327 0.9358298 prediction 0.515011384674131 Functional Gain - ARRDC1 ENSG00000197070 CDS Human protein_coding chr9:140507479 chr9:140507480 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_106942 0 0 1 0 1 ARRDC1 chr9:140507458 3'AG 140507458 Downstream 23bp
chr9 95738957 95738957 1 + C T SKCM 95738956 + 95738936 95738976 41 AACCTGACTCTGAGAACACCCCCCAGAAGGCTGACAAGGAT AACCTGACTCTGAGAACACCCTCCAGAAGGCTGACAAGGAT < 41bp 0.492574882484992 0.757502335255693 0.07785964 0.94691926 prediction 0.515004670511386 Functional Gain - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95738956 chr9:95738957 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_106943 0 0 0 0 1 FGD3 chr9:95738991 5'GT 95738991 Upstream 35bp
chr19 56171939 56171939 1 + C T SKCM 56171938 + 56171918 56171958 41 TAAATACTGGGACGTGCCACCCCCAGGCTTTGAGCACATCA TAAATACTGGGACGTGCCACCTCCAGGCTTTGAGCACATCA < 41bp 0.526421136942516 0.783902529420775 0.009691089 0.927778 prediction 0.514962784956518 Functional Gain - U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56171938 chr19:56171939 synonymous SNV . 0 22 hm5C_associated_SNPs_106947 0 0 1 0 2 U2AF2 chr19:56171882 3'AG 56171882 Downstream 58bp
chr19 56171939 56171939 1 + C T SKCM 56171938 + 56171918 56171958 41 TAAATACTGGGACGTGCCACCCCCAGGCTTTGAGCACATCA TAAATACTGGGACGTGCCACCTCCAGGCTTTGAGCACATCA < 41bp 0.526421136942516 0.783902529420775 0.009691089 0.927778 prediction 0.514962784956518 Functional Gain - U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56171938 chr19:56171939 synonymous SNV . 0 22 hm5C_associated_SNPs_106947 0 0 1 0 2 U2AF2 chr19:56171985 5'GT 56171985 Upstream 47bp
chr9 130152978 130152978 1 + C T SKCM 130152977 + 130152957 130152997 41 GCCAAAGGCCAAATCAAAACCCCGGAAGCGGTTAGAAGAAA GCCAAAGGCCAAATCAAAACCTCGGAAGCGGTTAGAAGAAA < 41bp 0.496354897152797 0.757476745213676 0.2774071 0.25299862 prediction 0.514953490427352 Functional Gain - GARNL3 ENSG00000136895 CDS Human protein_coding chr9:130152977 chr9:130152978 synonymous SNV . 0 22 hm5C_associated_SNPs_106948 0 0 0 0 2 GARNL3 chr9:130152920 3'AG 130152920 Downstream 59bp
chr9 130152978 130152978 1 + C T SKCM 130152977 + 130152957 130152997 41 GCCAAAGGCCAAATCAAAACCCCGGAAGCGGTTAGAAGAAA GCCAAAGGCCAAATCAAAACCTCGGAAGCGGTTAGAAGAAA < 41bp 0.496354897152797 0.757476745213676 0.2774071 0.25299862 prediction 0.514953490427352 Functional Gain - GARNL3 ENSG00000136895 CDS Human protein_coding chr9:130152977 chr9:130152978 synonymous SNV . 0 22 hm5C_associated_SNPs_106948 0 0 0 0 2 GARNL3 chr9:130153046 5'GT 130153046 Upstream 69bp
chr6 348192 348192 1 + T G COAD 348189 + 348169 348209 41 CTGGGAGGATGCCCTGCACACCGTGCGTGCTGGGAGATCCT CTGGGAGGATGCCCTGCACACCGGGCGTGCTGGGAGATCCT < 41bp 0.352442481303963 0.757475471117808 0.08071214 0.47721046 prediction 0.514950942235616 Functional Gain - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348189 chr6:348192 nonsynonymous SNV 0.806 5 24 hm5C_associated_SNPs_106949 0 0 1 0 2 DUSP22 chr6:348103 3'AG 348103 Downstream 90bp
chr6 348192 348192 1 + T G COAD 348189 + 348169 348209 41 CTGGGAGGATGCCCTGCACACCGTGCGTGCTGGGAGATCCT CTGGGAGGATGCCCTGCACACCGGGCGTGCTGGGAGATCCT < 41bp 0.352442481303963 0.757475471117808 0.08071214 0.47721046 prediction 0.514950942235616 Functional Gain - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348189 chr6:348192 nonsynonymous SNV 0.806 5 24 hm5C_associated_SNPs_106949 0 0 1 0 2 DUSP22 chr6:348274 5'GT 348274 Upstream 83bp
chr3 128627091 128627091 1 + C T UCEC 128627090 + 128627070 128627110 41 CTGCAGCATGCCGGCCGCATCCTGACTACCAGGATCCAGTA CTGCAGCATGCCGGCCGCATCTTGACTACCAGGATCCAGTA < 41bp 0.507397974019958 0.764866686177127 0.061311096 0.11852285 prediction 0.514937424314339 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128627090 chr3:128627091 synonymous SNV . 0 22 hm5C_associated_SNPs_106950 0 0 1 0 2 ACAD9 chr3:128627028 3'AG 128627028 Downstream 64bp
chr3 128627091 128627091 1 + C T UCEC 128627090 + 128627070 128627110 41 CTGCAGCATGCCGGCCGCATCCTGACTACCAGGATCCAGTA CTGCAGCATGCCGGCCGCATCTTGACTACCAGGATCCAGTA < 41bp 0.507397974019958 0.764866686177127 0.061311096 0.11852285 prediction 0.514937424314339 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128627090 chr3:128627091 synonymous SNV . 0 22 hm5C_associated_SNPs_106950 0 0 1 0 2 ACAD9 chr3:128627107 5'GT 128627107 Upstream 17bp
chr1 32050548 32050548 1 + C G SKCM 32050544 + 32050524 32050564 41 ACACATGACGCCTGTCCTGTCGCCCCAGAACCTGCTGTCTT ACACATGACGCCTGTCCTGTCGCCGCAGAACCTGCTGTCTT < 41bp 0.550440568080238 0.807889069170009 0.10016295 0.30372527 prediction 0.514897002179542 Functional Gain - TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32050544 chr1:32050548 synonymous SNV . 0 25 hm5C_associated_SNPs_106951 0 0 0 0 1 TINAGL1 chr1:32050487 3'AG 32050487 Downstream 62bp
chr17 40716744 40716744 1 + C T LUSC 40716743 + 40716723 40716763 41 CCAGGAAAGGCCAGAGCTCCCCACATGTCTCTATGTAATTG CCAGGAAAGGCCAGAGCTCCCTACATGTCTCTATGTAATTG < 41bp 0.508284819738866 0.765730000469785 0.107346326 0.8311376 prediction 0.514890361461838 Functional Gain - COASY ENSG00000068120 CDS Human protein_coding chr17:40716743 chr17:40716744 synonymous SNV . 0 22 hm5C_associated_SNPs_106953 0 0 1 0 1 COASY chr17:40716727 3'AG 40716727 Downstream 18bp
chr3 49012254 49012254 1 + C T SKCM 49012253 + 49012233 49012273 41 CCCTTCTGTCTCCTCAGTGTCCCAAGTGCAACATCTGCATT CCCTTCTGTCTCCTCAGTGTCTCAAGTGCAACATCTGCATT < 41bp 0.509155863370911 0.766599435553789 0.057480454 0.15754911 prediction 0.514887144365755 Functional Gain - ARIH2 ENSG00000177479 CDS Human protein_coding chr3:49012253 chr3:49012254 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_106954 0 0 1 0 1 ARIH2 chr3:49012300 5'GT 49012300 Upstream 47bp
chr3 148614363 148614363 1 + T A HNSC 148614359 + 148614339 148614379 41 TATGACCTGGGCATCAAACACACATTTGCCTTTGAGCTCCG TATGACCTGGGCATCAAACACACAATTGCCTTTGAGCTCCG < 41bp 0.604672483677709 0.862101970483791 0.109731466 0.14562303 prediction 0.514858973612163 Functional Gain - CPA3 ENSG00000163751 CDS Human protein_coding chr3:148614359 chr3:148614363 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_106955 0 0 0 0 1 CPA3 chr3:148614307 3'AG 148614307 Downstream 57bp
chr17 16203218 16203218 1 + C A UCEC 16203217 + 16203197 16203237 41 TGTAGGGATTTCCCAGATGACCCAGGCATGCAGTGGGACAC TGTAGGGATTTCCCAGATGACACAGGCATGCAGTGGGACAC < 41bp 0.494165267610052 0.757425499827709 0.27549464 0.36669844 prediction 0.514850999655418 Functional Gain - PIGL ENSG00000108474 CDS Human protein_coding chr17:16203217 chr17:16203218 nonsynonymous SNV 0.719 3 22 hm5C_associated_SNPs_106956 0 0 1 0 2 PIGL chr17:16203202 3'AG 16203202 Downstream 17bp
chr17 16203218 16203218 1 + C A UCEC 16203217 + 16203197 16203237 41 TGTAGGGATTTCCCAGATGACCCAGGCATGCAGTGGGACAC TGTAGGGATTTCCCAGATGACACAGGCATGCAGTGGGACAC < 41bp 0.494165267610052 0.757425499827709 0.27549464 0.36669844 prediction 0.514850999655418 Functional Gain - PIGL ENSG00000108474 CDS Human protein_coding chr17:16203217 chr17:16203218 nonsynonymous SNV 0.719 3 22 hm5C_associated_SNPs_106956 0 0 1 0 2 PIGL chr17:16203292 5'GT 16203292 Upstream 75bp
chr3 38182689 38182689 1 + T C UCS 38182687 + 38182667 38182707 41 AAGAAAGAGTTCCCCAGCATCCTGAGGTTCATCACTGTCTG AAGAAAGAGTTCCCCAGCATCCCGAGGTTCATCACTGTCTG < 41bp 0.520063430282102 0.777460601449771 0.18272343 0.3120107 prediction 0.514794342335338 Functional Gain - MYD88 ENSG00000172936 CDS Human protein_coding chr3:38182687 chr3:38182689 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_106959 0 0 1 0 1 MYD88 chr3:38182623 3'AG 38182623 Downstream 67bp
chr11 400353 400353 1 + C A CESC 400349 + 400329 400369 41 CCCAGGAACCTCAGCTCAGCCTCTCAGGCCACTCGCCAGAA CCCAGGAACCTCAGCTCAGCCTCTAAGGCCACTCGCCAGAA < 41bp 0.327757155166159 0.757384389762375 0.34596115 0.94051826 prediction 0.514768779524749 Functional Gain - PKP3 ENSG00000184363 CDS Human protein_coding chr11:400349 chr11:400353 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_106963 0 0 1 0 2 PKP3 chr11:400334 3'AG 400334 Downstream 20bp
chr11 400353 400353 1 + C A CESC 400349 + 400329 400369 41 CCCAGGAACCTCAGCTCAGCCTCTCAGGCCACTCGCCAGAA CCCAGGAACCTCAGCTCAGCCTCTAAGGCCACTCGCCAGAA < 41bp 0.327757155166159 0.757384389762375 0.34596115 0.94051826 prediction 0.514768779524749 Functional Gain - PKP3 ENSG00000184363 CDS Human protein_coding chr11:400349 chr11:400353 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_106963 0 0 1 0 2 PKP3 chr11:400451 5'GT 400451 Upstream 99bp
chr2 234237186 234237186 1 + C T SKCM 234237185 + 234237165 234237205 41 CACTTGAGATGGGTCCCCAGCCCCGAGCTGAGGCGGCCTGG CACTTGAGATGGGTCCCCAGCTCCGAGCTGAGGCGGCCTGG < 41bp 0.509060422575349 0.766409623439151 0.12652728 0.15051284 prediction 0.514698401727603 Functional Gain - SAG ENSG00000130561 CDS Human protein_coding chr2:234237185 chr2:234237186 nonsynonymous SNV 0.723 4 22 hm5C_associated_SNPs_106965 0 0 0 0 2 SAG chr2:234237124 3'AG 234237124 Downstream 63bp
chr2 234237186 234237186 1 + C T SKCM 234237185 + 234237165 234237205 41 CACTTGAGATGGGTCCCCAGCCCCGAGCTGAGGCGGCCTGG CACTTGAGATGGGTCCCCAGCTCCGAGCTGAGGCGGCCTGG < 41bp 0.509060422575349 0.766409623439151 0.12652728 0.15051284 prediction 0.514698401727603 Functional Gain - SAG ENSG00000130561 CDS Human protein_coding chr2:234237185 chr2:234237186 nonsynonymous SNV 0.723 4 22 hm5C_associated_SNPs_106965 0 0 0 0 2 SAG chr2:234237259 5'GT 234237259 Upstream 74bp
chr11 108546440 108546440 1 + C A UCEC 108546436 + 108546416 108546456 41 AAACTGGATCTGGCAAGACTCTGGCTTTTCTTGTTCCAGTA AAACTGGATCTGGCAAGACTCTGGATTTTCTTGTTCCAGTA < 41bp 0.660633083215087 0.91795726887221 0.34493065 0.4047851 prediction 0.514648371314245 Functional Gain - DDX10 ENSG00000178105 CDS Human protein_coding chr11:108546436 chr11:108546440 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_106967 0 0 0 0 1 DDX10 chr11:108546453 5'GT 108546453 Upstream 14bp
chr1 168274383 168274383 1 + C A SKCM 168274382 + 168274362 168274402 41 TATTCGGGTCTCCGAGGACACCGGCAGGCTCCCTACCCTTC TATTCGGGTCTCCGAGGACACAGGCAGGCTCCCTACCCTTC < 41bp 0.500665949116418 0.757963499649951 0.41908693 0.39273134 prediction 0.514595101067066 Functional Gain - TBX19 ENSG00000143178 CDS Human protein_coding chr1:168274382 chr1:168274383 synonymous SNV . 0 22 hm5C_associated_SNPs_106971 0 0 1 0 1 TBX19 chr1:168274434 5'GT 168274434 Upstream 52bp
chrX 65480022 65480022 1 + T C LUSC 65480020 + 65480000 65480040 41 TGGAGATGGTGGCCAGCAACCCTGGGACATGGCTGATGCAC TGGAGATGGTGGCCAGCAACCCCGGGACATGGCTGATGCAC < 41bp 0.483361552910911 0.757297524887482 0.5625789 0.86222076 prediction 0.514595049774964 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65480020 chrX:65480022 synonymous SNV . 0 23 hm5C_associated_SNPs_106972 0 0 1 0 2 HEPH chrX:65479942 3'AG 65479942 Downstream 81bp
chrX 65480022 65480022 1 + T C LUSC 65480020 + 65480000 65480040 41 TGGAGATGGTGGCCAGCAACCCTGGGACATGGCTGATGCAC TGGAGATGGTGGCCAGCAACCCCGGGACATGGCTGATGCAC < 41bp 0.483361552910911 0.757297524887482 0.5625789 0.86222076 prediction 0.514595049774964 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65480020 chrX:65480022 synonymous SNV . 0 23 hm5C_associated_SNPs_106972 0 0 1 0 2 HEPH chrX:65480104 5'GT 65480104 Upstream 83bp
chr1 79120723 79120723 1 + C A STAD 79120719 + 79120699 79120739 41 GCTCAGGAAGAGCTTACTGTCTGCCTTGAGAACTTATGAAC GCTCAGGAAGAGCTTACTGTCTGCATTGAGAACTTATGAAC < 41bp 0.66436965240929 0.921664052999372 0.07061565 0.1457988 prediction 0.514588801180165 Functional Gain - IFI44 ENSG00000137965 CDS Human protein_coding chr1:79120719 chr1:79120723 synonymous SNV . 0 25 hm5C_associated_SNPs_106973 0 0 0 0 1 IFI44 chr1:79120699 3'AG 79120699 Downstream 25bp
chr4 109088964 109088964 1 + C G rs374564051 109088963 + 109088943 109088983 41 CCGCTCCGCTGTGGGAGCACCCGCGCAACAGCAGGAAAGAC CCGCTCCGCTGTGGGAGCACCGGCGCAACAGCAGGAAAGAC < 41bp 0.458518070751698 0.757288133311826 0.5035035 0.7331645 prediction 0.514576266623652 Functional Gain - LEF1-AS1 ENSG00000232021 ncRNA_exonic Human processed_transcript chr4:109088963 chr4:109088964 . . 0 22 hm5C_associated_SNPs_106974 0 0 0 0 1 LEF1-AS1 chr4:109088989 5'GT 109088989 Upstream 26bp
chr1 183196822 183196822 1 + C G SKCM 183196821 + 183196801 183196841 41 GGTGTGCAATAACTGCCCTCCCGGGGTCACCGGTAAGGCCA GGTGTGCAATAACTGCCCTCCGGGGGTCACCGGTAAGGCCA < 41bp 0.593360722689898 0.850633805697249 0.90423596 0.9073025 prediction 0.5145461660147 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183196821 chr1:183196822 synonymous SNV . 0 22 hm5C_associated_SNPs_106976 0 0 0 0 1 LAMC2 chr1:183196832 5'GT 183196832 Upstream 11bp
chr16 57449107 57449107 1 + T C LUSC 57449105 + 57449085 57449125 41 GAGGACTGCTCCAGGGATGCCATCGTGTAAGTCCCCCTGGC GAGGACTGCTCCAGGGATGCCACCGTGTAAGTCCCCCTGGC < 41bp 0.503881496191253 0.761148964514834 0.4473456 0.42873943 prediction 0.514534936647162 Functional Gain - CCL17 ENSG00000102970 CDS Human protein_coding chr16:57449105 chr16:57449107 nonsynonymous SNV 0.158 4 23 hm5C_associated_SNPs_106978 0 0 0 0 1 CCL17 chr16:57449110 5'GT 57449110 Upstream 4bp
chr12 124220151 124220151 1 + C G LUSC 124220147 + 124220127 124220167 41 GAGATCCAGGAGGGGCTGAACACCCGCATCCAGGATCTCTA GAGATCCAGGAGGGGCTGAACACCGGCATCCAGGATCTCTA < 41bp 0.55377850051121 0.811045895746667 0.104616046 0.22491026 prediction 0.514534790470913 Functional Gain - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124220147 chr12:124220151 nonsynonymous SNV 0.082 5 25 hm5C_associated_SNPs_106979 0 0 1 0 2 ATP6V0A2 chr12:124220078 3'AG 124220078 Downstream 74bp
chr12 124220151 124220151 1 + C G LUSC 124220147 + 124220127 124220167 41 GAGATCCAGGAGGGGCTGAACACCCGCATCCAGGATCTCTA GAGATCCAGGAGGGGCTGAACACCGGCATCCAGGATCTCTA < 41bp 0.55377850051121 0.811045895746667 0.104616046 0.22491026 prediction 0.514534790470913 Functional Gain - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124220147 chr12:124220151 nonsynonymous SNV 0.082 5 25 hm5C_associated_SNPs_106979 0 0 1 0 2 ATP6V0A2 chr12:124220171 5'GT 124220171 Upstream 21bp
chr11 66238762 66238762 1 + C G rs200291371 66238758 + 66238738 66238778 41 GACAAGGGCCGCCGGCGAAGCCGCCTGGCACTGAGCCGCCG GACAAGGGCCGCCGGCGAAGCCGCGTGGCACTGAGCCGCCG < 41bp 0.454857642064381 0.75726595725162 0.42967528 0.47050548 prediction 0.514531914503241 Functional Gain - PELI3 ENSG00000174516 CDS Human protein_coding chr11:66238758 chr11:66238762 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_106980 0 0 0 0 1 PELI3 chr11:66238713 3'AG 66238713 Downstream 50bp
chr19 46024625 46024625 1 + C A GBM 46024624 + 46024604 46024644 41 CACTTCCCACCTGGTCGGTCCCGAACGGCCCCTCCCCGGAG CACTTCCCACCTGGTCGGTCCAGAACGGCCCCTCCCCGGAG < 41bp 0.507135247204628 0.764396169208351 0.096737504 0.32782245 prediction 0.514521844007445 Functional Gain - VASP ENSG00000125753 CDS Human protein_coding chr19:46024624 chr19:46024625 nonsynonymous SNV 0.133 0 22 hm5C_associated_SNPs_106981 0 0 1 0 2 VASP chr19:46024580 3'AG 46024580 Downstream 46bp
chr19 46024625 46024625 1 + C A GBM 46024624 + 46024604 46024644 41 CACTTCCCACCTGGTCGGTCCCGAACGGCCCCTCCCCGGAG CACTTCCCACCTGGTCGGTCCAGAACGGCCCCTCCCCGGAG < 41bp 0.507135247204628 0.764396169208351 0.096737504 0.32782245 prediction 0.514521844007445 Functional Gain - VASP ENSG00000125753 CDS Human protein_coding chr19:46024624 chr19:46024625 nonsynonymous SNV 0.133 0 22 hm5C_associated_SNPs_106981 0 0 1 0 2 VASP chr19:46024664 5'GT 46024664 Upstream 40bp
chr9 34506683 34506683 1 + C A UCEC 34506679 + 34506659 34506699 41 GCTCTACAGCCTGAAGAACCCCAGCTTCCCTGAGTACATGT GCTCTACAGCCTGAAGAACCCCAGATTCCCTGAGTACATGT < 41bp 0.344939216566706 0.75725761083671 0.26460803 0.3470642 prediction 0.514515221673419 Functional Gain - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34506679 chr9:34506683 nonsynonymous SNV 0.972 2 25 hm5C_associated_SNPs_106983 0 0 0 0 1 DNAI1 chr9:34506625 3'AG 34506625 Downstream 59bp
chr3 128624975 128624975 1 + C A CESC 128624974 + 128624954 128624994 41 CACCCCACAGGTGTTCAGCTCCGAGGCCGCCTGGCAGTGTG CACCCCACAGGTGTTCAGCTCAGAGGCCGCCTGGCAGTGTG < 41bp 0.515424170027492 0.772659823646895 0.4637661 0.6506394 prediction 0.514471307238806 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128624974 chr3:128624975 synonymous SNV . 0 22 hm5C_associated_SNPs_106986 0 0 1 0 1 ACAD9 chr3:128624964 3'AG 128624964 Downstream 12bp
chrX 601743 601743 1 + T C SKCM 601741 + 601721 601761 41 CCTTTGGACACAGGCGTCATCTTGGGCACAGCCAACCACCT CCTTTGGACACAGGCGTCATCTCGGGCACAGCCAACCACCT < 41bp 0.51468304315104 0.771906120353559 0.41269207 0.43662384 prediction 0.514446154405038 Functional Gain - SHOX ENSG00000185960 CDS Human protein_coding chrX:601741 chrX:601743 nonsynonymous SNV 0.078 4 23 hm5C_associated_SNPs_106987 0 0 0 0 2 SHOX chrX:601734 3'AG 601734 Downstream 10bp
chrX 601743 601743 1 + T C SKCM 601741 + 601721 601761 41 CCTTTGGACACAGGCGTCATCTTGGGCACAGCCAACCACCT CCTTTGGACACAGGCGTCATCTCGGGCACAGCCAACCACCT < 41bp 0.51468304315104 0.771906120353559 0.41269207 0.43662384 prediction 0.514446154405038 Functional Gain - SHOX ENSG00000185960 CDS Human protein_coding chrX:601741 chrX:601743 nonsynonymous SNV 0.078 4 23 hm5C_associated_SNPs_106987 0 0 0 0 2 SHOX chrX:601822 5'GT 601822 Upstream 80bp
chr5 137754692 137754692 1 + T G OV 137754689 + 137754669 137754709 41 TCTGGAAACGAAACTACCTTCTCTGGTGGAGGAGGACCGGC TCTGGAAACGAAACTACCTTCTCGGGTGGAGGAGGACCGGC < 41bp 0.37721505752288 0.757222355373962 0.22768325 0.17281911 prediction 0.514444710747925 Functional Gain - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137754689 chr5:137754692 synonymous SNV . 0 24 hm5C_associated_SNPs_106988 0 0 1 0 1 KDM3B chr5:137754642 3'AG 137754642 Downstream 51bp
chr20 61455823 61455823 1 + C T rs150148851 61455822 + 61455802 61455842 41 AAGTATCTGCCCGCCAGGTCCCCCAGGGCCCCCTGGAATGC AAGTATCTGCCCGCCAGGTCCTCCAGGGCCCCCTGGAATGC < 41bp 0.535001126985632 0.792210622602748 0.05994287 0.9498712 prediction 0.514418991234233 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61455822 chr20:61455823 synonymous SNV . 0 22 hm5C_associated_SNPs_106991 2 0 1 0 2 COL9A3 chr20:61455797 3'AG 61455797 Downstream 27bp
chr20 61455823 61455823 1 + C T rs150148851 61455822 + 61455802 61455842 41 AAGTATCTGCCCGCCAGGTCCCCCAGGGCCCCCTGGAATGC AAGTATCTGCCCGCCAGGTCCTCCAGGGCCCCCTGGAATGC < 41bp 0.535001126985632 0.792210622602748 0.05994287 0.9498712 prediction 0.514418991234233 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61455822 chr20:61455823 synonymous SNV . 0 22 hm5C_associated_SNPs_106991 2 0 1 0 2 COL9A3 chr20:61455853 5'GT 61455853 Upstream 31bp
chr5 137682483 137682483 1 + C A STAD 137682479 + 137682459 137682499 41 GTTCATGGCCTGTAGCCCCCCACCCCTCTCTGCTTCCTGCA GTTCATGGCCTGTAGCCCCCCACCACTCTCTGCTTCCTGCA < 41bp 0.339946093123589 0.757207728905069 0.035502523 0.043928802 prediction 0.514415457810139 Functional Gain - FAM53C ENSG00000120709 CDS Human protein_coding chr5:137682479 chr5:137682483 synonymous SNV . 0 25 hm5C_associated_SNPs_106992 0 0 1 0 1 FAM53C chr5:137682391 3'AG 137682391 Downstream 93bp
chr19 30101445 30101445 1 + C T ESCA 30101444 + 30101424 30101464 41 GTCCTGGAGTACTTCACCCGCCACAAGCGCAAGGAGAAGAA GTCCTGGAGTACTTCACCCGCTACAAGCGCAAGGAGAAGAA < 41bp 0.507593945615126 0.764793292713195 0.28459692 0.50173277 prediction 0.514398694196138 Functional Gain - POP4 ENSG00000105171 CDS Human protein_coding chr19:30101444 chr19:30101445 nonsynonymous SNV 0.178 0 22 hm5C_associated_SNPs_106993 0 0 1 0 1 POP4 chr19:30101539 5'GT 30101539 Upstream 95bp
chrX 49029519 49029519 1 + C A LUAD 49029518 + 49029498 49029538 41 TCTGCTTCAGTGCCTCCACACCAGGCTACTCCTCCCTGTCG TCTGCTTCAGTGCCTCCACACAAGGCTACTCCTCCCTGTCG < 41bp 0.50496990802231 0.762168225255693 0.8375356 0.9363687 prediction 0.514396634466765 Functional Gain - PLP2 ENSG00000102007 CDS Human protein_coding chrX:49029518 chrX:49029519 nonsynonymous SNV 0.986 0 22 hm5C_associated_SNPs_106994 0 0 1 0 1 PLP2 chrX:49029476 3'AG 49029476 Downstream 44bp
chr11 63963245 63963245 1 + C A SKCM 63963244 + 63963224 63963264 41 CTCCCAAAAAGGAGACCAAGCCAGAGCCAATGGAAGAAGAT CTCCCAAAAAGGAGACCAAGCAAGAGCCAATGGAAGAAGAT < 41bp 0.511474083291751 0.768662625615289 0.39001304 0.6422776 prediction 0.514377084647076 Functional Gain - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63963244 chr11:63963245 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_106995 0 0 1 0 1 STIP1 chr11:63963285 5'GT 63963285 Upstream 41bp
chr20 32336830 32336830 1 + C A UCEC 32336826 + 32336806 32336846 41 TGTGCTCATGTCTGCCATGTCAGCCTTCACATCCCTGGACC TGTGCTCATGTCTGCCATGTCAGCATTCACATCCCTGGACC < 41bp 0.669116778339214 0.926302673938091 0.15171754 0.26876682 prediction 0.514371791197753 Functional Gain - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32336826 chr20:32336830 synonymous SNV . 0 25 hm5C_associated_SNPs_106996 0 0 0 0 1 ZNF341 chr20:32336878 5'GT 32336878 Upstream 49bp
chrX 11783889 11783889 1 + C G LUSC 11783885 + 11783865 11783905 41 GTGCCCCAGGCCGGGGAGAGCCAGCGTGTACTTTGTGTTTA GTGCCCCAGGCCGGGGAGAGCCAGGGTGTACTTTGTGTTTA < 41bp 0.475873088385778 0.757184879705133 0.4262005 0.9115124 prediction 0.514369759410266 Functional Gain - MSL3 ENSG00000005302 CDS Human protein_coding chrX:11783885 chrX:11783889 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_106997 0 0 1 0 1 MSL3 chrX:11783848 3'AG 11783848 Downstream 42bp
chr12 131649768 131649768 1 + C A rs11061358 131649764 + 131649744 131649784 41 GTGTCCAGATGCAGGGAGCACTCGCCTGTGCTGTAAGTCTG GTGTCCAGATGCAGGGAGCACTCGACTGTGCTGTAAGTCTG < 41bp 0.635602598955873 0.892764675650259 0.34314752 0.80455065 prediction 0.514324153388773 Functional Gain - LINC01257 ENSG00000204603 ncRNA_exonic Human lincRNA chr12:131649764 chr12:131649768 . . 0 25 hm5C_associated_SNPs_106999 0 0 0 0 1 LINC01257 chr12:131649775 5'GT 131649775 Upstream 8bp
chr12 7286194 7286194 1 + T C UCEC 7286192 + 7286172 7286212 41 AGATCTGCGGCTTCCGGCTCCATGGGTCTGGGGTGCCCTTT AGATCTGCGGCTTCCGGCTCCACGGGTCTGGGGTGCCCTTT < 41bp 0.493016496879819 0.757148156895332 0.8757094 0.89264095 prediction 0.514296313790664 Functional Gain - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7286192 chr12:7286194 synonymous SNV . 0 23 hm5C_associated_SNPs_107002 0 0 1 0 1 CLSTN3 chr12:7286169 3'AG 7286169 Downstream 26bp
chr22 46693337 46693337 1 + C G rs201036893 46693336 + 46693316 46693356 41 CGCGATGAGCCTTCAGCCTGCCGGGCAGGGGACGTGAACAT CGCGATGAGCCTTCAGCCTGCGGGGCAGGGGACGTGAACAT < 41bp 0.595117855775037 0.852265811970637 0.0802671 0.40297836 prediction 0.514295912391199 Functional Gain - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46693336 chr22:46693337 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_107003 0 0 1 0 1 GTSE1 chr22:46693277 3'AG 46693277 Downstream 61bp
chrX 153627725 153627725 1 + C G LUSC 153627721 + 153627701 153627741 41 CCGTACCCAAAGTCTCGCTTCTGCCGAGGTGTCCCTGGTAA CCGTACCCAAAGTCTCGCTTCTGCGGAGGTGTCCCTGGTAA < 41bp 0.464071276016941 0.757140994471392 0.10429132 0.29828474 prediction 0.514281988942784 Functional Gain - RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627721 chrX:153627725 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_107005 0 0 1 0 1 RPL10 chrX:153627737 5'GT 153627737 Upstream 13bp
chr10 63212987 63212987 1 + C G rs541742422 63212986 + 63212966 63213006 41 CTCACCCTCAGCGCCCGATGCCGGTAGAACTGGTGCGCGGC CTCACCCTCAGCGCCCGATGCGGGTAGAACTGGTGCGCGGC < 41bp 0.451600545819722 0.757094757806976 0.85136616 0.90254736 prediction 0.514189515613951 Functional Gain - TMEM26-AS1 ENSG00000237233 ncRNA_exonic Human antisense chr10:63212986 chr10:63212987 . . 0 22 hm5C_associated_SNPs_107008 0 0 0 0 1 TMEM26-AS1 chr10:63213047 5'GT 63213047 Upstream 61bp
chr1 111892811 111892811 1 + T A LUSC 111892807 + 111892787 111892827 41 TTGGATCTCCAGACTGGGCTCAGGTTCCATGTCTACAGAAA TTGGATCTCCAGACTGGGCTCAGGATCCATGTCTACAGAAA < 41bp 0.5978600137057 0.854941786109932 0.17002651 0.68340456 prediction 0.514163544808463 Functional Gain - PIFO ENSG00000173947 CDS Human protein_coding chr1:111892807 chr1:111892811 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_107011 0 0 0 0 2 PIFO chr1:111892728 3'AG 111892728 Downstream 84bp
chr1 111892811 111892811 1 + T A LUSC 111892807 + 111892787 111892827 41 TTGGATCTCCAGACTGGGCTCAGGTTCCATGTCTACAGAAA TTGGATCTCCAGACTGGGCTCAGGATCCATGTCTACAGAAA < 41bp 0.5978600137057 0.854941786109932 0.17002651 0.68340456 prediction 0.514163544808463 Functional Gain - PIFO ENSG00000173947 CDS Human protein_coding chr1:111892807 chr1:111892811 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_107011 0 0 0 0 2 PIFO chr1:111892845 5'GT 111892845 Upstream 35bp
chr19 36120454 36120454 1 + C G LUAD 36120453 + 36120433 36120473 41 AAGTTCTGGGGGCTCCAGTACCTGGAATCCCAACTGCTGTG AAGTTCTGGGGGCTCCAGTACGTGGAATCCCAACTGCTGTG < 41bp 0.444951467238424 0.757081472375478 0.33947432 0.4548653 prediction 0.514162944750955 Functional Gain - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36120453 chr19:36120454 nonsynonymous SNV 0.980 1 22 hm5C_associated_SNPs_107013 0 0 1 0 1 RBM42 chr19:36120422 3'AG 36120422 Downstream 33bp
chr12 121437273 121437273 1 + T A SKCM 121437269 + 121437249 121437289 41 CATCCCCCGGGCTCAGGAGGCTGCTCTGCTCCCCCAGGTCT CATCCCCCGGGCTCAGGAGGCTGCACTGCTCCCCCAGGTCT < 41bp 0.43911579242076 0.75708091327755 0.34111187 0.38420317 prediction 0.5141618265551 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121437269 chr12:121437273 synonymous SNV . 0 25 hm5C_associated_SNPs_107014 0 0 0 0 1 HNF1A chr12:121437265 3'AG 121437265 Downstream 9bp
chr12 122620165 122620165 1 + C A rs532135984 122620161 + 122620141 122620181 41 CAAGACCCCCTGGGGAAGGGCGAGCAGGTCCCGCTGCATGG CAAGACCCCCTGGGGAAGGGCGAGAAGGTCCCGCTGCATGG < 41bp 0.36624655670933 0.757059459572092 0.27558836 0.30528092 prediction 0.514118919144183 Functional Gain - MLXIP ENSG00000175727 CDS Human protein_coding chr12:122620161 chr12:122620165 nonsynonymous SNV 0.992 1 25 hm5C_associated_SNPs_107016 0 0 1 0 1 MLXIP chr12:122620213 5'GT 122620213 Upstream 49bp
chr1 163044208 163044208 1 + T C UCEC 163044206 + 163044186 163044226 41 GCCCAGAAGAAGATTTTCAACCTGATGGAGAAGGATTCCTA GCCCAGAAGAAGATTTTCAACCCGATGGAGAAGGATTCCTA < 41bp 0.544655525489877 0.80169594490625 0.06759751 0.07176611 prediction 0.514080838832747 Functional Gain - RGS4 ENSG00000117152 CDS Human protein_coding chr1:163044206 chr1:163044208 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_107017 0 0 0 1 1 RGS4 chr1:163044111 3'AG 163044111 Downstream 98bp
chr20 4155834 4155834 1 + T C UCEC 4155832 + 4155812 4155852 41 TGGCTGCAGCCAAAGCACTTCTTGAGCAGGGTTTCACGGAT TGGCTGCAGCCAAAGCACTTCTCGAGCAGGGTTTCACGGAT < 41bp 0.541119199419684 0.798148173063199 0.14690074 0.8065689 prediction 0.51405794728703 Functional Gain - SMOX ENSG00000088826 CDS Human protein_coding chr20:4155832 chr20:4155834 synonymous SNV . 0 23 hm5C_associated_SNPs_107018 0 0 0 0 1 SMOX chr20:4155910 5'GT 4155910 Upstream 77bp
chr8 26505233 26505233 1 + C T STAD 26505232 + 26505212 26505252 41 AACCTTTACCCCCGGAAAGGCCGCATTGCTGTGGGATCCGA AACCTTTACCCCCGGAAAGGCTGCATTGCTGTGGGATCCGA < 41bp 0.488010577553805 0.757024684902735 0.054781497 0.04930502 prediction 0.514049369805469 Functional Gain - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26505232 chr8:26505233 nonsynonymous SNV 0.987 4 22 hm5C_associated_SNPs_107019 0 0 1 0 1 DPYSL2 chr8:26505146 3'AG 26505146 Downstream 88bp
chr10 73115961 73115961 1 + T C UCEC 73115959 + 73115939 73115979 41 ACTGTCTTCCTCGTGCTCTGCATGGGACTCTACCTGCTGCT ACTGTCTTCCTCGTGCTCTGCACGGGACTCTACCTGCTGCT < 41bp 0.50899229779563 0.766009719980169 0.4372403 0.6427599 prediction 0.514034844369077 Functional Gain - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73115959 chr10:73115961 nonsynonymous SNV 0.061 1 23 hm5C_associated_SNPs_107021 0 0 0 0 2 SLC29A3 chr10:73116000 5'GT 73116000 Upstream 40bp
chr10 73115961 73115961 1 + T C UCEC 73115959 + 73115939 73115979 41 ACTGTCTTCCTCGTGCTCTGCATGGGACTCTACCTGCTGCT ACTGTCTTCCTCGTGCTCTGCACGGGACTCTACCTGCTGCT < 41bp 0.50899229779563 0.766009719980169 0.4372403 0.6427599 prediction 0.514034844369077 Functional Gain - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73115959 chr10:73115961 nonsynonymous SNV 0.061 1 23 hm5C_associated_SNPs_107021 0 0 0 0 2 SLC29A3 chr10:73116006 5'GT 73116006 Upstream 46bp
chr17 78022497 78022497 1 + C A PRAD 78022496 + 78022476 78022516 41 CATGGCAGAGAGAGTGGAGTCCGAGGGGAGTGACGAGGAAG CATGGCAGAGAGAGTGGAGTCAGAGGGGAGTGACGAGGAAG < 41bp 0.524555270439136 0.78156200321814 0.6836939 0.8292029 prediction 0.514013465558008 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78022496 chr17:78022497 synonymous SNV . 0 22 hm5C_associated_SNPs_107023 0 0 1 0 1 CCDC40 chr17:78022560 5'GT 78022560 Upstream 64bp
chr19 35512755 35512755 1 + C A GBM 35512751 + 35512731 35512771 41 TCCTGACCCCTGTGCCCGGGCCGGCATTCACACCTCGGGTA TCCTGACCCCTGTGCCCGGGCCGGAATTCACACCTCGGGTA < 41bp 0.36166456665024 0.756988825161886 0.31266063 0.38162044 prediction 0.513977650323773 Functional Gain - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35512751 chr19:35512755 synonymous SNV . 0 25 hm5C_associated_SNPs_107024 0 0 1 0 1 GRAMD1A chr19:35512768 5'GT 35512768 Upstream 14bp
chr12 2932026 2932026 1 + C T UCEC 2932025 + 2932005 2932045 41 ACATATATCATTGATCACAACCGCACCGTCGTCCGCTTCCA ACATATATCATTGATCACAACTGCACCGTCGTCCGCTTCCA < 41bp 0.491365851853022 0.756981507189493 0.24520391 0.30519313 prediction 0.513963014378987 Functional Gain - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2932025 chr12:2932026 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_107025 0 0 1 0 2 ITFG2 chr12:2931960 3'AG 2931960 Downstream 67bp
chr12 2932026 2932026 1 + C T UCEC 2932025 + 2932005 2932045 41 ACATATATCATTGATCACAACCGCACCGTCGTCCGCTTCCA ACATATATCATTGATCACAACTGCACCGTCGTCCGCTTCCA < 41bp 0.491365851853022 0.756981507189493 0.24520391 0.30519313 prediction 0.513963014378987 Functional Gain - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2932025 chr12:2932026 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_107025 0 0 1 0 2 ITFG2 chr12:2932077 5'GT 2932077 Upstream 52bp
chrY 6948806 6948806 1 + T C ACC 6948804 + 6948784 6948824 41 GATGTGGACTGGCAGAACAACATGACCTTTGCCTCCTGTAG GATGTGGACTGGCAGAACAACACGACCTTTGCCTCCTGTAG < 41bp 0.52616292299861 0.783142198622386 0.20905939 0.28026575 prediction 0.513958551247552 Functional Gain - TBL1Y ENSG00000092377 CDS Human protein_coding chrY:6948804 chrY:6948806 nonsynonymous SNV 0.916 0 23 hm5C_associated_SNPs_107027 0 0 0 0 2 TBL1Y chrY:6948773 3'AG 6948773 Downstream 34bp
chrY 6948806 6948806 1 + T C ACC 6948804 + 6948784 6948824 41 GATGTGGACTGGCAGAACAACATGACCTTTGCCTCCTGTAG GATGTGGACTGGCAGAACAACACGACCTTTGCCTCCTGTAG < 41bp 0.52616292299861 0.783142198622386 0.20905939 0.28026575 prediction 0.513958551247552 Functional Gain - TBL1Y ENSG00000092377 CDS Human protein_coding chrY:6948804 chrY:6948806 nonsynonymous SNV 0.916 0 23 hm5C_associated_SNPs_107027 0 0 0 0 2 TBL1Y chrY:6948894 5'GT 6948894 Upstream 89bp
chr5 74655889 74655889 1 + T C UCEC 74655887 + 74655867 74655907 41 GCCCGAATTGTGTGTGGGACCGTAATGGCTGGGGAATTGTC GCCCGAATTGTGTGTGGGACCGCAATGGCTGGGGAATTGTC < 41bp 0.554660949650175 0.811639016979858 0.2679339 0.18463272 prediction 0.513956134659367 Functional Gain - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74655887 chr5:74655889 nonsynonymous SNV 0.683 3 23 hm5C_associated_SNPs_107028 0 0 1 0 2 HMGCR chr5:74655810 3'AG 74655810 Downstream 80bp
chr5 74655889 74655889 1 + T C UCEC 74655887 + 74655867 74655907 41 GCCCGAATTGTGTGTGGGACCGTAATGGCTGGGGAATTGTC GCCCGAATTGTGTGTGGGACCGCAATGGCTGGGGAATTGTC < 41bp 0.554660949650175 0.811639016979858 0.2679339 0.18463272 prediction 0.513956134659367 Functional Gain - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74655887 chr5:74655889 nonsynonymous SNV 0.683 3 23 hm5C_associated_SNPs_107028 0 0 1 0 2 HMGCR chr5:74655964 5'GT 74655964 Upstream 76bp
chr18 13643392 13643392 1 + C G rs202135989 13643391 + 13643371 13643411 41 GGCCTTCAGACAGCGCCGCACCGCGGCTGGGCGCCTCGGAG GGCCTTCAGACAGCGCCGCACGGCGGCTGGGCGCCTCGGAG < 41bp 0.460576135106324 0.756973682819104 0.2979771 0.60345674 prediction 0.513947365638208 Functional Gain - LDLRAD4 ENSG00000168675 CDS Human protein_coding chr18:13643391 chr18:13643392 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_107030 0 0 0 0 2 LDLRAD4 chr18:13643358 3'AG 13643358 Downstream 35bp
chr18 13643392 13643392 1 + C G rs202135989 13643391 + 13643371 13643411 41 GGCCTTCAGACAGCGCCGCACCGCGGCTGGGCGCCTCGGAG GGCCTTCAGACAGCGCCGCACGGCGGCTGGGCGCCTCGGAG < 41bp 0.460576135106324 0.756973682819104 0.2979771 0.60345674 prediction 0.513947365638208 Functional Gain - LDLRAD4 ENSG00000168675 CDS Human protein_coding chr18:13643391 chr18:13643392 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_107030 0 0 0 0 2 LDLRAD4 chr18:13643411 5'GT 13643411 Upstream 20bp
chr6 109575736 109575736 1 + T C ESCA 109575734 + 109575714 109575754 41 GCACAAGTGATGACGGACATCGTGCACCGACGCCCGAGGTT GCACAAGTGATGACGGACATCGCGCACCGACGCCCGAGGTT < 41bp 0.485415479004939 0.756969474207385 0.25474682 0.24696895 prediction 0.51393894841477 Functional Gain - C6orf183 ENSG00000243587;ENSG00000233908 intergenic Human other chr6:109575734 chr6:109575736 . . 0 23 hm5C_associated_SNPs_107031 0 0 0 0 1 C6orf183 chr6:109575651 3'AG 109575651 Downstream 86bp
chr10 103190141 103190141 1 + C G LUSC 103190137 + 103190117 103190157 41 TCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCC TCTCTGTGGCTGGGCTGCTCCAGCGTGGCGGACAGCATGCC < 41bp 0.471454943336547 0.756964228328987 0.4778318 0.59435725 prediction 0.513928456657974 Functional Gain - BTRC ENSG00000166167 CDS Human protein_coding chr10:103190137 chr10:103190141 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_107033 0 0 0 0 2 BTRC chr10:103190102 3'AG 103190102 Downstream 40bp
chr10 103190141 103190141 1 + C G LUSC 103190137 + 103190117 103190157 41 TCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCC TCTCTGTGGCTGGGCTGCTCCAGCGTGGCGGACAGCATGCC < 41bp 0.471454943336547 0.756964228328987 0.4778318 0.59435725 prediction 0.513928456657974 Functional Gain - BTRC ENSG00000166167 CDS Human protein_coding chr10:103190137 chr10:103190141 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_107033 0 0 0 0 2 BTRC chr10:103190209 5'GT 103190209 Upstream 69bp
chr11 113848577 113848577 1 + C T SKCM 113848576 + 113848556 113848596 41 ACTACAGGAAGGGTGTGCGCCCCGTGAGGGACTGGAGGAAG ACTACAGGAAGGGTGTGCGCCTCGTGAGGGACTGGAGGAAG < 41bp 0.502858864101879 0.759822591677157 0.22730204 0.2997414 prediction 0.513927455150556 Functional Gain - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113848576 chr11:113848577 nonsynonymous SNV 0.910 5 22 hm5C_associated_SNPs_107034 0 0 0 0 2 HTR3A chr11:113848493 3'AG 113848493 Downstream 85bp
chr11 113848577 113848577 1 + C T SKCM 113848576 + 113848556 113848596 41 ACTACAGGAAGGGTGTGCGCCCCGTGAGGGACTGGAGGAAG ACTACAGGAAGGGTGTGCGCCTCGTGAGGGACTGGAGGAAG < 41bp 0.502858864101879 0.759822591677157 0.22730204 0.2997414 prediction 0.513927455150556 Functional Gain - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113848576 chr11:113848577 nonsynonymous SNV 0.910 5 22 hm5C_associated_SNPs_107034 0 0 0 0 2 HTR3A chr11:113848644 5'GT 113848644 Upstream 68bp
chr12 118469037 118469037 1 + T A OV 118469033 + 118469013 118469053 41 AGAAGATCCAGCTGAGCTCCCTCATTGCTGCATTTCAAGTC AGAAGATCCAGCTGAGCTCCCTCAATGCTGCATTTCAAGTC < 41bp 0.429516965799767 0.75695058953926 0.27550954 0.8292642 prediction 0.513901179078521 Functional Gain - RFC5 ENSG00000111445 CDS Human protein_coding chr12:118469033 chr12:118469037 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_107036 0 0 1 0 1 RFC5 chr12:118468987 3'AG 118468987 Downstream 51bp
chrX 153416161 153416161 1 + C A UCEC 153416160 + 153416140 153416180 41 GCCCGAATTACCACATCGCTCCCAGATGGGTGTACCACCTC GCCCGAATTACCACATCGCTCACAGATGGGTGTACCACCTC < 41bp 0.504016071933573 0.760933510313306 0.06439325 0.054027766 prediction 0.513834876759465 Functional Gain - OPN1LW ENSG00000102076 CDS Human protein_coding chrX:153416160 chrX:153416161 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_107040 0 0 0 0 1 OPN1LW chrX:153416128 3'AG 153416128 Downstream 34bp
chr16 67116228 67116228 1 + T A BLCA 67116224 + 67116204 67116244 41 AAATGGAGGTGAGAGTTTCACAGCTGCTGGCAGTAACTGGT AAATGGAGGTGAGAGTTTCACAGCAGCTGGCAGTAACTGGT < 41bp 0.599755830059854 0.856668416737664 0.66405386 0.59471166 prediction 0.51382517335562 Functional Gain - CBFB ENSG00000067955 CDS Human protein_coding chr16:67116224 chr16:67116228 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_107041 0 0 1 0 1 CBFB chr16:67116242 5'GT 67116242 Upstream 15bp
chr10 72500888 72500888 1 + C A STAD 72500884 + 72500864 72500904 41 TACTATGTGCACCAGAATGCCAAGCACAGCTGGGTGCCCTA TACTATGTGCACCAGAATGCCAAGAACAGCTGGGTGCCCTA < 41bp 0.340595670570235 0.756911026559845 0.116455704 0.27484262 prediction 0.513822053119691 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72500884 chr10:72500888 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_107042 0 0 0 0 1 ADAMTS14 chr10:72500918 5'GT 72500918 Upstream 31bp
chr17 5280440 5280440 1 + T C rs3026101 5280438 + 5280418 5280458 41 GGGAGTTGGTATTAAAATACCGTGAGGACATCATTAATGTG GGGAGTTGGTATTAAAATACCGCGAGGACATCATTAATGTG < 41bp 0.556059847105171 0.812967510878362 0.11844146 0.15585873 prediction 0.513815327546382 Functional Gain - RABEP1 ENSG00000029725 CDS Human protein_coding chr17:5280438 chr17:5280440 synonymous SNV . 0 23 hm5C_associated_SNPs_107044 0 1 1 0 1 RABEP1 chr17:5280411 3'AG 5280411 Downstream 30bp
chr1 205496967 205496967 1 + C T COAD 205496966 + 205496946 205496986 41 GGCCTCGCCTACTGTCACCACCGCAAGATCCTGCACCGGGA GGCCTCGCCTACTGTCACCACTGCAAGATCCTGCACCGGGA < 41bp 0.51151913193643 0.768422419397777 0.2925086 0.47861746 prediction 0.513806574922694 Functional Gain - CDK18 ENSG00000117266 CDS Human protein_coding chr1:205496966 chr1:205496967 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_107045 0 0 1 0 2 CDK18 chr1:205496922 3'AG 205496922 Downstream 46bp
chr1 205496967 205496967 1 + C T COAD 205496966 + 205496946 205496986 41 GGCCTCGCCTACTGTCACCACCGCAAGATCCTGCACCGGGA GGCCTCGCCTACTGTCACCACTGCAAGATCCTGCACCGGGA < 41bp 0.51151913193643 0.768422419397777 0.2925086 0.47861746 prediction 0.513806574922694 Functional Gain - CDK18 ENSG00000117266 CDS Human protein_coding chr1:205496966 chr1:205496967 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_107045 0 0 1 0 2 CDK18 chr1:205497045 5'GT 205497045 Upstream 79bp
chr11 12247770 12247770 1 + T A rs146600661 12247766 + 12247746 12247786 41 GCTGTGGAGAACAACCAGCTCGCATTTGATGTGGCCGAGCG GCTGTGGAGAACAACCAGCTCGCAATTGATGTGGCCGAGCG < 41bp 0.420701853150748 0.7568987163431 0.04367307 0.07686055 prediction 0.5137974326862 Functional Gain - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12247766 chr11:12247770 nonsynonymous SNV 0.860 3 25 hm5C_associated_SNPs_107047 0 0 0 0 1 MICAL2 chr11:12247718 3'AG 12247718 Downstream 53bp
chr19 11032116 11032116 1 + C G SKCM 11032115 + 11032095 11032135 41 ATAATGAGCACGGGGATTGTCCAAGGTAACGAGGGTGGCGG ATAATGAGCACGGGGATTGTCGAAGGTAACGAGGGTGGCGG < 41bp 0.454432347706906 0.756885815843064 0.8534013 0.9202556 prediction 0.513771631686129 Functional Gain - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11032115 chr19:11032116 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_107049 0 0 0 0 2 CARM1 chr19:11032051 3'AG 11032051 Downstream 66bp
chr19 11032116 11032116 1 + C G SKCM 11032115 + 11032095 11032135 41 ATAATGAGCACGGGGATTGTCCAAGGTAACGAGGGTGGCGG ATAATGAGCACGGGGATTGTCGAAGGTAACGAGGGTGGCGG < 41bp 0.454432347706906 0.756885815843064 0.8534013 0.9202556 prediction 0.513771631686129 Functional Gain - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11032115 chr19:11032116 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_107049 0 0 0 0 2 CARM1 chr19:11032119 5'GT 11032119 Upstream 4bp
chr1 236711387 236711387 1 + T A UCEC 236711383 + 236711363 236711403 41 CACAGCCTGGAGTACAAACACAGATTTAAAGAGCTCAGCAG CACAGCCTGGAGTACAAACACAGAATTAAAGAGCTCAGCAG < 41bp 0.452899697922187 0.756877291544017 0.29901528 0.78695273 prediction 0.513754583088035 Functional Gain - LGALS8 ENSG00000116977 CDS Human protein_coding chr1:236711383 chr1:236711387 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_107053 0 0 1 1 1 LGALS8 chr1:236711312 3'AG 236711312 Downstream 76bp
chr18 56892886 56892886 1 + C T SKCM 56892885 + 56892865 56892905 41 GAAACCACCAGCCACCTCAACCCAAGGCCCTGGGCAATCAG GAAACCACCAGCCACCTCAACTCAAGGCCCTGGGCAATCAG < 41bp 0.507278492680631 0.764150712052462 0.24103358 0.435941 prediction 0.513744438743662 Functional Gain - GRP ENSG00000134443 CDS Human protein_coding chr18:56892885 chr18:56892886 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_107056 0 0 0 0 2 GRP chr18:56892947 5'GT 56892947 Upstream 62bp
chr18 56892886 56892886 1 + C T SKCM 56892885 + 56892865 56892905 41 GAAACCACCAGCCACCTCAACCCAAGGCCCTGGGCAATCAG GAAACCACCAGCCACCTCAACTCAAGGCCCTGGGCAATCAG < 41bp 0.507278492680631 0.764150712052462 0.24103358 0.435941 prediction 0.513744438743662 Functional Gain - GRP ENSG00000134443 CDS Human protein_coding chr18:56892885 chr18:56892886 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_107056 0 0 0 0 2 GRP chr18:56892966 5'GT 56892966 Upstream 81bp
chr11 33053107 33053107 1 + C A rs966191 33053103 + 33053083 33053123 41 ACCTCTGTTAAATCACTTATCTGACGTTCATAATGGAATTG ACCTCTGTTAAATCACTTATCTGAAGTTCATAATGGAATTG < 41bp 0.353810653102691 0.756850463815624 0.2891074 0.30376482 prediction 0.513700927631248 Functional Gain - DEPDC7 ENSG00000121690 CDS Human protein_coding chr11:33053103 chr11:33053107 nonsynonymous SNV 0.152 1 25 hm5C_associated_SNPs_107060 0 0 0 0 1 DEPDC7 chr11:33053135 5'GT 33053135 Upstream 29bp
chr20 36954734 36954734 1 + C A LUAD 36954730 + 36954710 36954750 41 CAGCCTCCACCCCGCCACACCTGTCTGTGCAGCCCACCGGC CAGCCTCCACCCCGCCACACCTGTATGTGCAGCCCACCGGC < 41bp 0.339688716704176 0.756843254531697 0.07193464 0.115638375 prediction 0.513686509063394 Functional Gain - BPI ENSG00000101425 CDS Human protein_coding chr20:36954730 chr20:36954734 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_107062 0 0 0 0 1 BPI chr20:36954667 3'AG 36954667 Downstream 68bp
chr8 43046629 43046629 1 + C G BRCA 43046625 + 43046605 43046645 41 GCCCCCACTCAGGAGAGGAGCTGCCTTTCTCTTCGAGACAT GCCCCCACTCAGGAGAGGAGCTGCGTTTCTCTTCGAGACAT < 41bp 0.463909356678209 0.756832744372547 0.09337747 0.15813756 prediction 0.513665488745094 Functional Gain - HGSNAT ENSG00000165102 CDS Human protein_coding chr8:43046625 chr8:43046629 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_107065 0 0 1 0 1 HGSNAT chr8:43046617 3'AG 43046617 Downstream 13bp
chr16 70506907 70506907 1 + T C rs7192865 70506905 + 70506885 70506925 41 GAGCCTGGGACCTGTGGGACCCTGAGACGCTGCCCGCAGAG GAGCCTGGGACCTGTGGGACCCCGAGACGCTGCCCGCAGAG < 41bp 0.484811580058682 0.756819041491814 0.3683725 0.30959874 prediction 0.513638082983628 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70506905 chr16:70506907 synonymous SNV . 0 23 hm5C_associated_SNPs_107068 0 0 0 0 1 FUK chr16:70506886 3'AG 70506886 Downstream 22bp
chr3 121573611 121573611 1 + T C UCEC 121573609 + 121573589 121573629 41 AATGCATTTTGATTATTAACCATGATACTGGAGAATGTCGG AATGCATTTTGATTATTAACCACGATACTGGAGAATGTCGG < 41bp 0.527038431712011 0.783847435697029 0.13553205 0.1351139 prediction 0.513618007970035 Functional Gain - EAF2 ENSG00000145088 CDS Human protein_coding chr3:121573609 chr3:121573611 synonymous SNV . 0 23 hm5C_associated_SNPs_107069 0 0 0 0 1 EAF2 chr3:121573670 5'GT 121573670 Upstream 60bp
chr18 72593032 72593032 1 + C G rs34940122 72593028 + 72593008 72593048 41 GTGTGACCTCTGCGGCTTTGCCGGCGGGACCCGCCACGCCC GTGTGACCTCTGCGGCTTTGCCGGGGGGACCCGCCACGCCC < 41bp 0.545735207229435 0.802519454547979 0.913412 0.9538634 prediction 0.513568494637088 Functional Gain - ZNF407 ENSG00000215421 CDS Human protein_coding chr18:72593028 chr18:72593032 synonymous SNV . 0 25 hm5C_associated_SNPs_107073 1 0 0 0 2 ZNF407 chr18:72592992 3'AG 72592992 Downstream 41bp
chr18 72593032 72593032 1 + C G rs34940122 72593028 + 72593008 72593048 41 GTGTGACCTCTGCGGCTTTGCCGGCGGGACCCGCCACGCCC GTGTGACCTCTGCGGCTTTGCCGGGGGGACCCGCCACGCCC < 41bp 0.545735207229435 0.802519454547979 0.913412 0.9538634 prediction 0.513568494637088 Functional Gain - ZNF407 ENSG00000215421 CDS Human protein_coding chr18:72593028 chr18:72593032 synonymous SNV . 0 25 hm5C_associated_SNPs_107073 1 0 0 0 2 ZNF407 chr18:72593075 5'GT 72593075 Upstream 44bp
chr17 48755222 48755222 1 + C A rs34620384 48755221 + 48755201 48755241 41 AGTGTCATCCGGGCCTACAACCGCAGCCGGGATTTTGAGAT AGTGTCATCCGGGCCTACAACAGCAGCCGGGATTTTGAGAT < 41bp 0.504610792910426 0.76139239209164 0.91190696 0.83743674 prediction 0.513563198362428 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48755221 chr17:48755222 nonsynonymous SNV 0.030 4 22 hm5C_associated_SNPs_107074 0 0 1 0 1 ABCC3 chr17:48755304 5'GT 48755304 Upstream 83bp
chr1 212209261 212209261 1 + C G PAAD 212209260 + 212209240 212209280 41 TCAATTCGGTGCTCCGCCAGCCCCAGCTTGGCGTCCTGAGA TCAATTCGGTGCTCCGCCAGCGCCAGCTTGGCGTCCTGAGA < 41bp 0.581082792630894 0.837860273283843 0.1221399 0.24483216 prediction 0.513554961305899 Functional Gain - DTL ENSG00000143476 CDS Human protein_coding chr1:212209260 chr1:212209261 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_107075 0 0 1 0 1 DTL chr1:212209284 5'GT 212209284 Upstream 24bp
chr15 83781599 83781599 1 + T G rs79470022 83781596 + 83781576 83781616 41 CCTCATCCTGTTCCTGGTAGCACTGCTGGCTCGTGTCCTCG CCTCATCCTGTTCCTGGTAGCACGGCTGGCTCGTGTCCTCG < 41bp 0.656905412085869 0.913676159678357 0.059400946 0.2450878 prediction 0.513541495184976 Functional Gain - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83781596 chr15:83781599 nonsynonymous SNV 0.867 2 24 hm5C_associated_SNPs_107080 0 0 0 3 2 TM6SF1 chr15:83781549 3'AG 83781549 Downstream 51bp
chr15 83781599 83781599 1 + T G rs79470022 83781596 + 83781576 83781616 41 CCTCATCCTGTTCCTGGTAGCACTGCTGGCTCGTGTCCTCG CCTCATCCTGTTCCTGGTAGCACGGCTGGCTCGTGTCCTCG < 41bp 0.656905412085869 0.913676159678357 0.059400946 0.2450878 prediction 0.513541495184976 Functional Gain - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83781596 chr15:83781599 nonsynonymous SNV 0.867 2 24 hm5C_associated_SNPs_107080 0 0 0 3 2 TM6SF1 chr15:83781652 5'GT 83781652 Upstream 54bp
chr14 45475275 45475275 1 + C T SKCM 45475274 + 45475254 45475294 41 CTTGGTGAGATCGCCATCTTCCCGACGAGGTCTAAATGGGA CTTGGTGAGATCGCCATCTTCTCGACGAGGTCTAAATGGGA < 41bp 0.523875795850987 0.780646509409026 0.085133255 0.5044362 prediction 0.513541427116077 Functional Gain - TOGARAM1 ENSG00000198718 CDS Human protein_coding chr14:45475274 chr14:45475275 synonymous SNV . 0 22 hm5C_associated_SNPs_107081 0 0 0 0 1 TOGARAM1 chr14:45475211 3'AG 45475211 Downstream 65bp
chr15 99796162 99796162 1 + C A BLCA 99796158 + 99796138 99796178 41 CGTGCCTGATGGGATATATTCAGTCATGGCGTCCGAACTTT CGTGCCTGATGGGATATATTCAGTAATGGCGTCCGAACTTT < 41bp 0.482229972851061 0.756744128829001 0.24312639 0.26613826 prediction 0.513488257658002 Functional Gain - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99796158 chr15:99796162 stopgain 0.997 0 25 hm5C_associated_SNPs_107085 0 0 1 0 1 LRRC28 chr15:99796103 3'AG 99796103 Downstream 60bp
chr20 45355517 45355517 1 + C T COAD 45355516 + 45355496 45355536 41 ACCCTAGTGACCTGGCTTGTCCTCAGCGAGATCTACCCTGT ACCCTAGTGACCTGGCTTGTCTTCAGCGAGATCTACCCTGT < 41bp 0.495723476290282 0.756713033070369 0.05787313 0.09938902 prediction 0.513426066140737 Functional Gain - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45355516 chr20:45355517 nonsynonymous SNV 0.955 5 22 hm5C_associated_SNPs_107089 0 0 0 0 1 SLC2A10 chr20:45355503 3'AG 45355503 Downstream 15bp
chr6 159173058 159173058 1 + T C UCEC 159173056 + 159173036 159173076 41 GACCCGACCTTTCAGGAGACCTTGAAGGTACTTGCTGGACA GACCCGACCTTTCAGGAGACCTCGAAGGTACTTGCTGGACA < 41bp 0.564263640664122 0.820971755745183 0.041455388 0.3866351 prediction 0.513416230162121 Functional Gain - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159173056 chr6:159173058 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_107090 0 0 0 0 2 SYTL3 chr6:159172960 3'AG 159172960 Downstream 99bp
chr6 159173058 159173058 1 + T C UCEC 159173056 + 159173036 159173076 41 GACCCGACCTTTCAGGAGACCTTGAAGGTACTTGCTGGACA GACCCGACCTTTCAGGAGACCTCGAAGGTACTTGCTGGACA < 41bp 0.564263640664122 0.820971755745183 0.041455388 0.3866351 prediction 0.513416230162121 Functional Gain - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159173056 chr6:159173058 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_107090 0 0 0 0 2 SYTL3 chr6:159173062 5'GT 159173062 Upstream 5bp
chr20 35060146 35060146 1 + C A LUSC 35060142 + 35060122 35060162 41 TGAAAGGCCTCGGTGACAGCCGCCCCCGCCACCTCTCCGAC TGAAAGGCCTCGGTGACAGCCGCCACCGCCACCTCTCCGAC < 41bp 0.333035528367605 0.756697392074699 0.18238884 0.22654098 prediction 0.513394784149398 Functional Gain - DLGAP4 ENSG00000080845 CDS Human protein_coding chr20:35060142 chr20:35060146 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_107092 0 0 0 0 1 DLGAP4 chr20:35060049 3'AG 35060049 Downstream 98bp
chr16 88926026 88926026 1 + C A rs3826063 88926025 + 88926005 88926045 41 GGCCCACAGAGGGCCCTCCACCGGCAGTCCCTGTGTTACGA GGCCCACAGAGGGCCCTCCACAGGCAGTCCCTGTGTTACGA < 41bp 0.499713346211959 0.75668787343682 0.27966014 0.21672595 prediction 0.513375746873639 Functional Gain - TRAPPC2L ENSG00000167515 CDS Human protein_coding chr16:88926025 chr16:88926026 synonymous SNV . 0 22 hm5C_associated_SNPs_107095 0 0 0 0 1 TRAPPC2L chr16:88925981 3'AG 88925981 Downstream 46bp
chr12 113725993 113725993 1 + C T UCEC 113725992 + 113725972 113726012 41 TTTAAGTTGAAGGAGCGCTACCGCAACGTGCTGGACACCAT TTTAAGTTGAAGGAGCGCTACTGCAACGTGCTGGACACCAT < 41bp 0.505900253294093 0.76258234213608 0.24227455 0.21385169 prediction 0.513364177683974 Functional Gain - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113725992 chr12:113725993 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_107096 0 0 1 0 2 TPCN1 chr12:113725968 3'AG 113725968 Downstream 26bp
chr12 113725993 113725993 1 + C T UCEC 113725992 + 113725972 113726012 41 TTTAAGTTGAAGGAGCGCTACCGCAACGTGCTGGACACCAT TTTAAGTTGAAGGAGCGCTACTGCAACGTGCTGGACACCAT < 41bp 0.505900253294093 0.76258234213608 0.24227455 0.21385169 prediction 0.513364177683974 Functional Gain - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113725992 chr12:113725993 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_107096 0 0 1 0 2 TPCN1 chr12:113726039 5'GT 113726039 Upstream 47bp
chr1 180217588 180217588 1 + T C UCEC 180217586 + 180217566 180217606 41 GTCTACTGCAAGGAGGACTTCTTCAAGTAAGTCAGAACGGT GTCTACTGCAAGGAGGACTTCTCCAAGTAAGTCAGAACGGT < 41bp 0.466629690497346 0.756681701820331 0.31506518 0.96368194 prediction 0.513363403640662 Functional Gain - LHX4 ENSG00000121454 CDS Human protein_coding chr1:180217586 chr1:180217588 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_107097 0 0 0 0 1 LHX4 chr1:180217591 5'GT 180217591 Upstream 4bp
chr12 53666575 53666575 1 + T G PRAD 53666572 + 53666552 53666592 41 TATGCCGAGGCCTGTGCCATCTCTGAGCCGCTCTGTCAGCA TATGCCGAGGCCTGTGCCATCTCGGAGCCGCTCTGTCAGCA < 41bp 0.368620394422678 0.756674924414146 0.14876008 0.20948991 prediction 0.513349848828292 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53666572 chr12:53666575 synonymous SNV . 0 24 hm5C_associated_SNPs_107098 0 0 1 0 2 ESPL1 chr12:53666505 3'AG 53666505 Downstream 71bp
chr12 53666575 53666575 1 + T G PRAD 53666572 + 53666552 53666592 41 TATGCCGAGGCCTGTGCCATCTCTGAGCCGCTCTGTCAGCA TATGCCGAGGCCTGTGCCATCTCGGAGCCGCTCTGTCAGCA < 41bp 0.368620394422678 0.756674924414146 0.14876008 0.20948991 prediction 0.513349848828292 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53666572 chr12:53666575 synonymous SNV . 0 24 hm5C_associated_SNPs_107098 0 0 1 0 2 ESPL1 chr12:53666641 5'GT 53666641 Upstream 67bp
chr5 180338425 180338425 1 + C A COAD 180338421 + 180338401 180338441 41 TGTCAGTCCTCGGGCTGGTTCCCCCGGCCCACAGCGAAGTG TGTCAGTCCTCGGGCTGGTTCCCCAGGCCCACAGCGAAGTG < 41bp 0.329894426657152 0.75666710373462 0.14628261 0.23877975 prediction 0.51333420746924 Functional Gain - BTNL8 ENSG00000113303 CDS Human protein_coding chr5:180338421 chr5:180338425 synonymous SNV . 0 25 hm5C_associated_SNPs_107100 0 0 0 0 1 BTNL8 chr5:180338339 3'AG 180338339 Downstream 87bp
chr17 21205553 21205553 1 + T C rs529768181 21205551 + 21205531 21205571 41 TGACAATTCCAGAGGACATCCTTGGGGAGATTGCTGTGTCT TGACAATTCCAGAGGACATCCTCGGGGAGATTGCTGTGTCT < 41bp 0.531863829317212 0.788521834070159 0.098139375 0.052021295 prediction 0.513316009505894 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21205551 chr17:21205553 synonymous SNV . 0 23 hm5C_associated_SNPs_107102 0 0 1 0 2 MAP2K3 chr17:21205455 3'AG 21205455 Downstream 99bp
chr17 21205553 21205553 1 + T C rs529768181 21205551 + 21205531 21205571 41 TGACAATTCCAGAGGACATCCTTGGGGAGATTGCTGTGTCT TGACAATTCCAGAGGACATCCTCGGGGAGATTGCTGTGTCT < 41bp 0.531863829317212 0.788521834070159 0.098139375 0.052021295 prediction 0.513316009505894 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21205551 chr17:21205553 synonymous SNV . 0 23 hm5C_associated_SNPs_107102 0 0 1 0 2 MAP2K3 chr17:21205571 5'GT 21205571 Upstream 19bp
chr19 39898406 39898406 1 + C G CESC 39898402 + 39898382 39898422 41 GAGCCTCCTGTCGCTGAGCCCTGACGTGCCCGTGCCATCCG GAGCCTCCTGTCGCTGAGCCCTGAGGTGCCCGTGCCATCCG < 41bp 0.568264566272889 0.824922025098349 0.044565916 0.2312856 prediction 0.51331491765092 Functional Gain - ZFP36 ENSG00000128016 CDS Human other chr19:39898402 chr19:39898406 nonsynonymous SNV 0.285 0 25 hm5C_associated_SNPs_107103 0 0 1 0 1 ZFP36 chr19:39898383 3'AG 39898383 Downstream 24bp
chr2 95542383 95542383 1 + C A LUSC 95542379 + 95542359 95542399 41 GAAGCGGAGCAGTCCCTGCGCAACCTCGAGGACATCCACAT GAAGCGGAGCAGTCCCTGCGCAACATCGAGGACATCCACAT < 41bp 0.350354928793077 0.756613926397077 0.04730636 0.046901762 prediction 0.513227852794154 Functional Gain - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95542379 chr2:95542383 nonsynonymous SNV 0.596 4 25 hm5C_associated_SNPs_107106 0 0 0 0 1 TEKT4 chr2:95542298 3'AG 95542298 Downstream 86bp
chr15 29406136 29406136 1 + C T STAD 29406135 + 29406115 29406155 41 GGGGGCGTCCGTGTGGGCCACCGCATCATCGAGATCAACGG GGGGGCGTCCGTGTGGGCCACTGCATCATCGAGATCAACGG < 41bp 0.502735705798484 0.759337250909933 0.12752345 0.42070997 prediction 0.513203090222899 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29406135 chr15:29406136 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_107108 0 0 1 0 2 APBA2 chr15:29406079 3'AG 29406079 Downstream 58bp
chr15 29406136 29406136 1 + C T STAD 29406135 + 29406115 29406155 41 GGGGGCGTCCGTGTGGGCCACCGCATCATCGAGATCAACGG GGGGGCGTCCGTGTGGGCCACTGCATCATCGAGATCAACGG < 41bp 0.502735705798484 0.759337250909933 0.12752345 0.42070997 prediction 0.513203090222899 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29406135 chr15:29406136 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_107108 0 0 1 0 2 APBA2 chr15:29406219 5'GT 29406219 Upstream 84bp
chr11 124013276 124013276 1 + C A rs140075877 124013272 + 124013252 124013292 41 AGAAATAATGGCTGCACAGCCTGCCGAGGTAAGATTCAATG AGAAATAATGGCTGCACAGCCTGCAGAGGTAAGATTCAATG < 41bp 0.336502750307525 0.75659663303176 0.037306637 0.09307128 prediction 0.513193266063519 Functional Gain - VWA5A ENSG00000110002 CDS Human protein_coding chr11:124013272 chr11:124013276 synonymous SNV . 0 25 hm5C_associated_SNPs_107110 0 0 0 0 1 VWA5A chr11:124013279 5'GT 124013279 Upstream 4bp
chr3 10320651 10320651 1 + C A COAD 10320647 + 10320627 10320667 41 AGATTGCCAGAGTCAAAGATCAGCCACTCTCCCTCACCTTG AGATTGCCAGAGTCAAAGATCAGCAACTCTCCCTCACCTTG < 41bp 0.343481767247206 0.756593903686924 0.34914976 0.17370573 prediction 0.513187807373847 Functional Gain - TATDN2 ENSG00000157014 CDS Human protein_coding chr3:10320647 chr3:10320651 nonsynonymous SNV 0.741 0 25 hm5C_associated_SNPs_107111 0 0 1 0 3 TATDN2 chr3:10320569 3'AG 10320569 Downstream 83bp
chr3 10320651 10320651 1 + C A COAD 10320647 + 10320627 10320667 41 AGATTGCCAGAGTCAAAGATCAGCCACTCTCCCTCACCTTG AGATTGCCAGAGTCAAAGATCAGCAACTCTCCCTCACCTTG < 41bp 0.343481767247206 0.756593903686924 0.34914976 0.17370573 prediction 0.513187807373847 Functional Gain - TATDN2 ENSG00000157014 CDS Human other chr3:10320647 chr3:10320651 nonsynonymous SNV 0.741 0 25 hm5C_associated_SNPs_107111 0 0 1 0 3 TATDN2 chr3:10320718 5'GT 10320718 Upstream 68bp
chr3 10320651 10320651 1 + C A COAD 10320647 + 10320627 10320667 41 AGATTGCCAGAGTCAAAGATCAGCCACTCTCCCTCACCTTG AGATTGCCAGAGTCAAAGATCAGCAACTCTCCCTCACCTTG < 41bp 0.343481767247206 0.756593903686924 0.34914976 0.17370573 prediction 0.513187807373847 Functional Gain - TATDN2 ENSG00000157014 CDS Human protein_coding chr3:10320647 chr3:10320651 nonsynonymous SNV 0.741 0 25 hm5C_associated_SNPs_107111 0 0 1 0 3 TATDN2 chr3:10320747 5'GT 10320747 Upstream 97bp
chr19 55106225 55106225 1 + C G LUAD 55106224 + 55106204 55106244 41 TGTCAGGGGATCCTGGAGACCCAGGAGTACCGTCTGTATAG TGTCAGGGGATCCTGGAGACCGAGGAGTACCGTCTGTATAG < 41bp 0.590717482490816 0.847307176122954 0.84646386 0.90427005 prediction 0.513179387264276 Functional Gain - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55106224 chr19:55106225 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_107113 0 0 0 0 1 LILRA1 chr19:55106130 3'AG 55106130 Downstream 96bp
chr8 27645446 27645446 1 + T C COAD 27645444 + 27645424 27645464 41 TCTGTGGGATCTGTCAACTTCATGAAACAGACCAATATCCA TCTGTGGGATCTGTCAACTTCACGAAACAGACCAATATCCA < 41bp 0.471969707289895 0.75658004306776 0.21026126 0.18613863 prediction 0.51316008613552 Functional Gain - ESCO2 ENSG00000171320 CDS Human protein_coding chr8:27645444 chr8:27645446 nonsynonymous SNV 0.879 0 23 hm5C_associated_SNPs_107114 0 0 1 0 2 ESCO2 chr8:27645402 3'AG 27645402 Downstream 45bp
chr8 27645446 27645446 1 + T C COAD 27645444 + 27645424 27645464 41 TCTGTGGGATCTGTCAACTTCATGAAACAGACCAATATCCA TCTGTGGGATCTGTCAACTTCACGAAACAGACCAATATCCA < 41bp 0.471969707289895 0.75658004306776 0.21026126 0.18613863 prediction 0.51316008613552 Functional Gain - ESCO2 ENSG00000171320 CDS Human protein_coding chr8:27645444 chr8:27645446 nonsynonymous SNV 0.879 0 23 hm5C_associated_SNPs_107114 0 0 1 0 2 ESCO2 chr8:27645519 5'GT 27645519 Upstream 74bp
chr2 241631311 241631311 1 + T A rs543118545 241631307 + 241631287 241631327 41 CCTCAGGTGTCCTGCAGGCACAGCTCCTCGGGGGGCCCAGG CCTCAGGTGTCCTGCAGGCACAGCACCTCGGGGGGCCCAGG < 41bp 0.540698612641025 0.797276589995937 0.2646075 0.30796722 prediction 0.513155954709823 Functional Gain - AQP12A ENSG00000184945 UTR5 Human protein_coding chr2:241631307 chr2:241631311 . . 0 25 hm5C_associated_SNPs_107116 0 0 0 0 1 AQP12A chr2:241631337 5'GT 241631337 Upstream 27bp
chr17 43174523 43174523 1 + C A PAAD 43174522 + 43174502 43174542 41 CCGGCCACCCGGCTGGCTCCCCCAGTGGCACTGTGGGGTTC CCGGCCACCCGGCTGGCTCCCACAGTGGCACTGTGGGGTTC < 41bp 0.514762243607955 0.771320157101731 0.37864292 0.38143486 prediction 0.513115826987551 Functional Gain - NMT1 ENSG00000136448 CDS Human protein_coding chr17:43174522 chr17:43174523 synonymous SNV . 0 22 hm5C_associated_SNPs_107119 0 0 1 0 2 NMT1 chr17:43174496 3'AG 43174496 Downstream 28bp
chr17 43174523 43174523 1 + C A PAAD 43174522 + 43174502 43174542 41 CCGGCCACCCGGCTGGCTCCCCCAGTGGCACTGTGGGGTTC CCGGCCACCCGGCTGGCTCCCACAGTGGCACTGTGGGGTTC < 41bp 0.514762243607955 0.771320157101731 0.37864292 0.38143486 prediction 0.513115826987551 Functional Gain - NMT1 ENSG00000136448 CDS Human protein_coding chr17:43174522 chr17:43174523 synonymous SNV . 0 22 hm5C_associated_SNPs_107119 0 0 1 0 2 NMT1 chr17:43174612 5'GT 43174612 Upstream 90bp
chr20 26061960 26061960 1 + T C LIHC 26061958 + 26061938 26061978 41 ATCCCGGAGGGGTCTCTGCGCCTCAGTCGGCATCGCAGCTG ATCCCGGAGGGGTCTCTGCGCCCCAGTCGGCATCGCAGCTG < 41bp 0.500819491376279 0.757375972620512 0.10680702 0.05314824 prediction 0.513112962488466 Functional Gain - FAM182A ENSG00000125804 ncRNA_exonic Human processed_transcript chr20:26061958 chr20:26061960 . . 0 23 hm5C_associated_SNPs_107120 0 0 0 0 1 FAM182A chr20:26062026 5'GT 26062026 Upstream 67bp
chr1 46807117 46807117 1 + C A rs72885163 46807113 + 46807093 46807133 41 CTCGAGCTGCCTCTGGCGACCGGGCAAGGTTACAGCGACCA CTCGAGCTGCCTCTGGCGACCGGGAAAGGTTACAGCGACCA < 41bp 0.414347318060846 0.756554479910639 0.29596114 0.7067002 prediction 0.513108959821278 Functional Gain - NSUN4 ENSG00000117481 UTR5 Human protein_coding chr1:46807113 chr1:46807117 . . 0 25 hm5C_associated_SNPs_107121 0 0 0 0 1 NSUN4 chr1:46807169 5'GT 46807169 Upstream 53bp
chr5 3600743 3600743 1 + C A rs6884950 3600739 + 3600719 3600759 41 GCAGAGAGAGACCTCGTCCCCAGGCCAGATTCGCCGGCACA GCAGAGAGAGACCTCGTCCCCAGGACAGATTCGCCGGCACA < 41bp 0.65598597382396 0.912528713993879 0.771292 0.88376033 prediction 0.513085480339838 Functional Gain - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3600739 chr5:3600743 nonsynonymous SNV 0.979 0 25 hm5C_associated_SNPs_107125 0 0 0 0 2 IRX1 chr5:3600723 3'AG 3600723 Downstream 21bp
chr5 3600743 3600743 1 + C A rs6884950 3600739 + 3600719 3600759 41 GCAGAGAGAGACCTCGTCCCCAGGCCAGATTCGCCGGCACA GCAGAGAGAGACCTCGTCCCCAGGACAGATTCGCCGGCACA < 41bp 0.65598597382396 0.912528713993879 0.771292 0.88376033 prediction 0.513085480339838 Functional Gain - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3600739 chr5:3600743 nonsynonymous SNV 0.979 0 25 hm5C_associated_SNPs_107125 0 0 0 0 2 IRX1 chr5:3600795 5'GT 3600795 Upstream 53bp
chr8 2040298 2040298 1 + C G rs2235122 2040297 + 2040277 2040317 41 CTACGTGGACTGCTGTGTGGCCGGAACCAACCTCTGGGAGC CTACGTGGACTGCTGTGTGGCGGGAACCAACCTCTGGGAGC < 41bp 0.594554779370604 0.851060601923615 0.77877223 0.91136795 prediction 0.513011645106021 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2040297 chr8:2040298 synonymous SNV . 0 22 hm5C_associated_SNPs_107128 0 0 1 0 1 MYOM2 chr8:2040348 5'GT 2040348 Upstream 51bp
chr20 20051575 20051575 1 + C T SARC 20051574 + 20051554 20051594 41 AGGCCACCTTCCTGGACTACCCCAACTGGAATGTTGCCAAG AGGCCACCTTCCTGGACTACCTCAACTGGAATGTTGCCAAG < 41bp 0.493873987189332 0.756504093093774 0.110224426 0.40895087 prediction 0.513008186187549 Functional Gain - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20051574 chr20:20051575 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_107129 0 0 0 0 2 CFAP61 chr20:20051498 3'AG 20051498 Downstream 78bp
chr20 20051575 20051575 1 + C T SARC 20051574 + 20051554 20051594 41 AGGCCACCTTCCTGGACTACCCCAACTGGAATGTTGCCAAG AGGCCACCTTCCTGGACTACCTCAACTGGAATGTTGCCAAG < 41bp 0.493873987189332 0.756504093093774 0.110224426 0.40895087 prediction 0.513008186187549 Functional Gain - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20051574 chr20:20051575 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_107129 0 0 0 0 2 CFAP61 chr20:20051648 5'GT 20051648 Upstream 74bp
chr16 4559505 4559505 1 + T C GBM 4559503 + 4559483 4559523 41 ACGATGGGAAAGGAGACATGCGTAAATGCCCTTTCTACGCT ACGATGGGAAAGGAGACATGCGCAAATGCCCTTTCTACGCT < 41bp 0.550951725156004 0.807445650957796 0.16749221 0.09407371 prediction 0.512987851603585 Functional Gain - HMOX2 ENSG00000103415 CDS Human protein_coding chr16:4559503 chr16:4559505 synonymous SNV . 0 23 hm5C_associated_SNPs_107130 0 0 1 0 2 HMOX2 chr16:4559413 3'AG 4559413 Downstream 93bp
chr16 4559505 4559505 1 + T C GBM 4559503 + 4559483 4559523 41 ACGATGGGAAAGGAGACATGCGTAAATGCCCTTTCTACGCT ACGATGGGAAAGGAGACATGCGCAAATGCCCTTTCTACGCT < 41bp 0.550951725156004 0.807445650957796 0.16749221 0.09407371 prediction 0.512987851603585 Functional Gain - HMOX2 ENSG00000103415 CDS Human protein_coding chr16:4559503 chr16:4559505 synonymous SNV . 0 23 hm5C_associated_SNPs_107130 0 0 1 0 2 HMOX2 chr16:4559539 5'GT 4559539 Upstream 35bp
chr4 48490487 48490487 1 + T C ESCA 48490485 + 48490465 48490505 41 GTGACTCTGGTGGTCCTTTTCATAATGACCGGCACTATGTT GTGACTCTGGTGGTCCTTTTCACAATGACCGGCACTATGTT < 41bp 0.554638763054296 0.811126002232151 0.39870292 0.41825223 prediction 0.51297447835571 Functional Gain - SLC10A4 ENSG00000145248 CDS Human protein_coding chr4:48490485 chr4:48490487 nonsynonymous SNV 0.985 1 23 hm5C_associated_SNPs_107131 0 0 0 0 1 SLC10A4 chr4:48490444 3'AG 48490444 Downstream 44bp
chr9 77249576 77249576 1 + T G SKCM 77249573 + 77249553 77249593 41 TTTAGGAGGAGCCAGCAGAACAATGCTTCTTATTCCTGCCC TTTAGGAGGAGCCAGCAGAACAAGGCTTCTTATTCCTGCCC < 41bp 0.365547866372149 0.756482095975204 0.2704941 0.8905857 prediction 0.512964191950408 Functional Gain - RORB ENSG00000198963 CDS Human protein_coding chr9:77249573 chr9:77249576 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_107132 0 0 0 0 1 RORB chr9:77249547 3'AG 77249547 Downstream 30bp
chr10 120879962 120879962 1 + C G BLCA 120879961 + 120879941 120879981 41 AGAAGCGGTCCAGGAGTTCACCAGGTATCACCTCTAATTAT AGAAGCGGTCCAGGAGTTCACGAGGTATCACCTCTAATTAT < 41bp 0.45996781919459 0.756467932829309 0.77700865 0.8924466 prediction 0.512935865658618 Functional Gain - FAM45A ENSG00000119979 CDS Human protein_coding chr10:120879961 chr10:120879962 synonymous SNV 0.991 0 22 hm5C_associated_SNPs_107134 0 0 0 0 1 FAM45A chr10:120879964 5'GT 120879964 Upstream 3bp
chr18 10485517 10485517 1 + C A UCEC 10485513 + 10485493 10485533 41 TCTATCGGTCAGACGAGCACCACCCTCCCATCCTGCCCCCA TCTATCGGTCAGACGAGCACCACCATCCCATCCTGCCCCCA < 41bp 0.317627522779912 0.756464676706673 0.11942455 0.16317064 prediction 0.512929353413346 Functional Gain - APCDD1 ENSG00000154856 CDS Human protein_coding chr18:10485513 chr18:10485517 nonsynonymous SNV 0.875 4 25 hm5C_associated_SNPs_107135 0 0 0 0 1 APCDD1 chr18:10485459 3'AG 10485459 Downstream 59bp
chr12 125621341 125621341 1 + T C CESC 125621339 + 125621319 125621359 41 CTGACTTGGTTAAGAGGATCCGTGACGCCATCCGCATGGGC CTGACTTGGTTAAGAGGATCCGCGACGCCATCCGCATGGGC < 41bp 0.537681924264802 0.794093547561309 0.29976505 0.2985087 prediction 0.512823246593013 Functional Gain - AACS ENSG00000081760 CDS Human protein_coding chr12:125621339 chr12:125621341 synonymous SNV . 0 23 hm5C_associated_SNPs_107143 0 0 0 1 1 AACS chr12:125621410 5'GT 125621410 Upstream 70bp
chr4 2695381 2695381 1 + C T SKCM 2695380 + 2695360 2695400 41 CCAGCCGCCCCGAGGAATAGCCCCACGGGCTTGGCCCCCCT CCAGCCGCCCCGAGGAATAGCTCCACGGGCTTGGCCCCCCT < 41bp 0.531418605855526 0.787821936821331 0.4771365 0.94281507 prediction 0.512806661931609 Functional Gain - FAM193A ENSG00000125386 CDS Human protein_coding chr4:2695380 chr4:2695381 nonsynonymous SNV 0.897 1 22 hm5C_associated_SNPs_107146 0 0 1 0 1 FAM193A chr4:2695313 3'AG 2695313 Downstream 69bp
chr5 75428132 75428132 1 + C G BLCA 75428131 + 75428111 75428151 41 CTGAGACAGACCTCTGCATCCCAAATTCAGGATCTGGATGG CTGAGACAGACCTCTGCATCCGAAATTCAGGATCTGGATGG < 41bp 0.449692998765733 0.756389047788237 0.14275831 0.266791 prediction 0.512778095576474 Functional Gain - SV2C ENSG00000122012 CDS Human protein_coding chr5:75428131 chr5:75428132 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_107147 0 0 0 0 1 SV2C chr5:75428155 5'GT 75428155 Upstream 24bp
chr8 55370910 55370910 1 + C A LUAD 55370906 + 55370886 55370926 41 AGGGCGAGTCCCGTATCCGGCGGCCGATGAACGCTTTCATG AGGGCGAGTCCCGTATCCGGCGGCAGATGAACGCTTTCATG < 41bp 0.653850458848432 0.910227262196921 0.8227504 0.88581294 prediction 0.512753606696977 Functional Gain - SOX17 ENSG00000164736 CDS Human protein_coding chr8:55370906 chr8:55370910 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_107148 0 0 0 0 1 SOX17 chr8:55371005 5'GT 55371005 Upstream 96bp
chr11 43350323 43350323 1 + C T UCEC 43350322 + 43350302 43350342 41 AGAATGCTGGTAATGAAGAACCCAAGCTACAGTTCAGTTAT AGAATGCTGGTAATGAAGAACTCAAGCTACAGTTCAGTTAT < 41bp 0.49479489424589 0.756354311058304 0.07811642 0.14825803 prediction 0.512708622116609 Functional Gain - API5 ENSG00000166181 CDS Human protein_coding chr11:43350322 chr11:43350323 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_107152 0 0 1 0 1 API5 chr11:43350262 3'AG 43350262 Downstream 62bp
chr6 44144631 44144631 1 + C A PRAD 44144627 + 44144607 44144647 41 CGCTCCTGGAGATCTGCAACCTCACGCCTGATACACTCTCT CGCTCCTGGAGATCTGCAACCTCAAGCCTGATACACTCTCT < 41bp 0.319136546507927 0.756349872348887 0.010930121 0.052349567 prediction 0.512699744697773 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44144627 chr6:44144631 nonsynonymous SNV 0.734 4 25 hm5C_associated_SNPs_107153 0 0 0 0 1 CAPN11 chr6:44144575 3'AG 44144575 Downstream 57bp
chr9 91150599 91150599 1 + C A LUAD 91150595 + 91150575 91150615 41 TCCCAGGAGATGCTGGACTTCATGCGCGAGCTGCATGGCGC TCCCAGGAGATGCTGGACTTCATGAGCGAGCTGCATGGCGC < 41bp 0.655276166316025 0.911621468361658 0.680642 0.62166107 prediction 0.512690604091266 Functional Gain - NXNL2 ENSG00000130045 CDS Human protein_coding chr9:91150595 chr9:91150599 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_107154 0 0 0 0 1 NXNL2 chr9:91150651 5'GT 91150651 Upstream 53bp
chr19 50209263 50209263 1 + C T SKCM 50209262 + 50209242 50209282 41 CTCCCGAAACAGCCTGCTTTCCCCGAGAGCCCTGGAGCAGC CTCCCGAAACAGCCTGCTTTCTCCGAGAGCCCTGGAGCAGC < 41bp 0.491175908861287 0.756331363469825 0.49989983 0.7995975 prediction 0.51266272693965 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50209262 chr19:50209263 synonymous SNV . 0 22 hm5C_associated_SNPs_107157 0 0 0 0 1 CPT1C chr19:50209361 5'GT 50209361 Upstream 99bp
chr1 28081734 28081734 1 + C A KIRC 28081730 + 28081710 28081750 41 TCCCCAGACCTGGCTCTGGACTCACCAGGCACTGACCACTT TCCCCAGACCTGGCTCTGGACTCAACAGGCACTGACCACTT < 41bp 0.321051415150472 0.756321971646493 0.019162834 0.09382254 prediction 0.512643943292986 Functional Gain - FAM76A ENSG00000009780 CDS Human protein_coding chr1:28081730 chr1:28081734 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_107158 0 0 1 0 1 FAM76A chr1:28081706 3'AG 28081706 Downstream 29bp
chr11 48166425 48166425 1 + T G GBM 48166422 + 48166402 48166442 41 TTACAATGGGAAGCTGGAACCTCTGGGCTCCTACCGGTAAT TTACAATGGGAAGCTGGAACCTCGGGGCTCCTACCGGTAAT < 41bp 0.374850388473292 0.756319198595535 0.20205072 0.835888 prediction 0.51263839719107 Functional Gain - PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48166422 chr11:48166425 nonsynonymous SNV 0.983 2 24 hm5C_associated_SNPs_107161 0 0 1 0 1 PTPRJ chr11:48166437 5'GT 48166437 Upstream 13bp
chr19 50880053 50880053 1 + T G rs76217494 50880050 + 50880030 50880070 41 GCCATGAGCCCCGCCCCCCGCTGTTGCTTGGAGAGGGGCGG GCCATGAGCCCCGCCCCCCGCTGGTGCTTGGAGAGGGGCGG < 41bp 0.375391286255353 0.75626424555409 0.24425605 0.37001845 prediction 0.512528491108179 Functional Gain - NR1H2 ENSG00000131408 UTR5 Human protein_coding chr19:50880050 chr19:50880053 . . 0 24 hm5C_associated_SNPs_107168 0 0 1 0 2 NR1H2 chr19:50879976 3'AG 50879976 Downstream 78bp
chr19 50880053 50880053 1 + T G rs76217494 50880050 + 50880030 50880070 41 GCCATGAGCCCCGCCCCCCGCTGTTGCTTGGAGAGGGGCGG GCCATGAGCCCCGCCCCCCGCTGGTGCTTGGAGAGGGGCGG < 41bp 0.375391286255353 0.75626424555409 0.24425605 0.37001845 prediction 0.512528491108179 Functional Gain - NR1H2 ENSG00000131408 UTR5 Human protein_coding chr19:50880050 chr19:50880053 . . 0 24 hm5C_associated_SNPs_107168 0 0 1 0 2 NR1H2 chr19:50880083 5'GT 50880083 Upstream 31bp
chr4 169108548 169108548 1 + T G SKCM 169108545 + 169108525 169108565 41 TTCAGGGCATTATAAGAAAGCACTGCTTGCCATCTGTGCTG TTCAGGGCATTATAAGAAAGCACGGCTTGCCATCTGTGCTG < 41bp 0.383747887474691 0.756209880747403 0.055329084 0.13191089 prediction 0.512419761494806 Functional Gain - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169108545 chr4:169108548 nonsynonymous SNV 0.926 4 24 hm5C_associated_SNPs_107172 0 0 0 0 1 ANXA10 chr4:169108517 3'AG 169108517 Downstream 32bp
chr2 216176791 216176791 1 + C G rs117281478 216176790 + 216176770 216176810 41 GCTTCCTGAGCCGCCACATCCCGGCAGCCCTCCTACCTGCG GCTTCCTGAGCCGCCACATCCGGGCAGCCCTCCTACCTGCG < 41bp 0.580813677385314 0.837019354428176 0.9165548 0.93699515 prediction 0.512411354085724 Functional Gain - ATIC ENSG00000138363 UTR5 Human protein_coding chr2:216176790 chr2:216176791 . . 0 22 hm5C_associated_SNPs_107173 0 0 0 0 1 ATIC chr2:216176884 5'GT 216176884 Upstream 94bp
chr19 55889220 55889220 1 + C A UCEC 55889216 + 55889196 55889236 41 GCGCTGGTCTGGACGTGCAGCGGCCTCCTCCTCCTGAGCTG GCGCTGGTCTGGACGTGCAGCGGCATCCTCCTCCTGAGCTG < 41bp 0.66197586812891 0.918175816947225 0.16269198 0.31337336 prediction 0.512399897636629 Functional Gain - TMEM190 ENSG00000160472 CDS Human protein_coding chr19:55889216 chr19:55889220 nonsynonymous SNV 0.018 2 25 hm5C_associated_SNPs_107174 0 0 0 0 1 TMEM190 chr19:55889170 3'AG 55889170 Downstream 51bp
chr6 43026993 43026993 1 - A T UCEC 43026997 - 43026977 43027017 41 CATCTTACCCGGGAAGAAGGCTGCTTCCATTCGGGCTGCCG CATCTTACCCGGGAAGAAGGCTGCATCCATTCGGGCTGCCG < 41bp 0.451782337628159 0.756196598275977 0.19665945 0.1312108 prediction 0.512393196551953 Functional Gain - MRPL2 ENSG00000112651 CDS Human protein_coding chr6:43026997 chr6:43026993 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_107175 0 0 0 0 1 MRPL2 chr6:43026918 5'GT 43026918 Upstream 76bp
chr2 202712121 202712121 1 + T G UCEC 202712119 + 202712099 202712139 41 GCTAGGGGTGCAGGCTGCATCTTTATTGAAATGTTCCAGGG GCTAGGGGTGCAGGCTGCATCTGTATTGAAATGTTCCAGGG < 41bp 0.440081163544593 0.75617739248831 0.10355097 0.27230498 prediction 0.512354784976619 Functional Gain - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202712119 chr2:202712121 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_107177 0 0 0 0 2 CDK15 chr2:202712104 3'AG 202712104 Downstream 18bp
chr2 202712121 202712121 1 + T G UCEC 202712119 + 202712099 202712139 41 GCTAGGGGTGCAGGCTGCATCTTTATTGAAATGTTCCAGGG GCTAGGGGTGCAGGCTGCATCTGTATTGAAATGTTCCAGGG < 41bp 0.440081163544593 0.75617739248831 0.10355097 0.27230498 prediction 0.512354784976619 Functional Gain - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202712119 chr2:202712121 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_107177 0 0 0 0 2 CDK15 chr2:202712197 5'GT 202712197 Upstream 77bp
chr7 98895561 98895561 1 + T A rs559525001 98895557 + 98895537 98895577 41 GAATTCAGTTGGAACTGGCTCAGGTTAAAGCTGACATCGAC GAATTCAGTTGGAACTGGCTCAGGATAAAGCTGACATCGAC < 41bp 0.562417493348019 0.818558838742676 0.8823862 0.8895584 prediction 0.512282690789313 Functional Gain - MYH16 ENSG00000002079 ncRNA_exonic Human transcribed_unitary_pseudogene chr7:98895557 chr7:98895561 . . 0 25 hm5C_associated_SNPs_107182 0 0 0 0 1 MYH16 chr7:98895515 3'AG 98895515 Downstream 47bp
chr12 7064102 7064102 1 + C T UCEC 7064101 + 7064081 7064121 41 TTTCTGTGCTCAGTGACCAGCCCAAGGCTGGCCCAGGCTCC TTTCTGTGCTCAGTGACCAGCTCAAGGCTGGCCCAGGCTCC < 41bp 0.51119722662372 0.767337493569488 0.3873052 0.47889316 prediction 0.512280533891535 Functional Gain - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7064101 chr12:7064102 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_107183 0 0 0 0 1 PTPN6 chr12:7064157 5'GT 7064157 Upstream 56bp
chr9 77277478 77277478 1 + T C UCEC 77277476 + 77277456 77277496 41 TTTGCAAAGCGGATAACAGGCTTCATGGAGCTCTGTCAAAA TTTGCAAAGCGGATAACAGGCTCCATGGAGCTCTGTCAAAA < 41bp 0.583399168938594 0.839532441408556 0.05507511 0.78474945 prediction 0.512266544939924 Functional Gain - RORB ENSG00000198963 CDS Human protein_coding chr9:77277476 chr9:77277478 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_107185 0 0 0 0 2 RORB chr9:77277390 3'AG 77277390 Downstream 89bp
chr9 77277478 77277478 1 + T C UCEC 77277476 + 77277456 77277496 41 TTTGCAAAGCGGATAACAGGCTTCATGGAGCTCTGTCAAAA TTTGCAAAGCGGATAACAGGCTCCATGGAGCTCTGTCAAAA < 41bp 0.583399168938594 0.839532441408556 0.05507511 0.78474945 prediction 0.512266544939924 Functional Gain - RORB ENSG00000198963 CDS Human protein_coding chr9:77277476 chr9:77277478 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_107185 0 0 0 0 2 RORB chr9:77277522 5'GT 77277522 Upstream 45bp
chr2 98341683 98341683 1 + T C rs115846138 98341681 + 98341661 98341701 41 GTGAGGAGGCCGAGCGCAAACTTTACTCTGGGGCGCAGACC GTGAGGAGGCCGAGCGCAAACTCTACTCTGGGGCGCAGACC < 41bp 0.535837975682765 0.791960557416072 0.26950938 0.7145475 prediction 0.512245163466615 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98341681 chr2:98341683 synonymous SNV . 0 23 hm5C_associated_SNPs_107186 0 0 0 0 1 ZAP70 chr2:98341715 5'GT 98341715 Upstream 33bp
chr5 122515882 122515882 1 + C A UCEC 122515878 + 122515858 122515898 41 ACTGCTCCCAGTCCTTTTCCCAGCCTTCAGAACTGAGGAAC ACTGCTCCCAGTCCTTTTCCCAGCATTCAGAACTGAGGAAC < 41bp 0.35002010289924 0.756121507286754 0.85234725 0.8663315 prediction 0.512243014573509 Functional Gain - PRDM6 ENSG00000061455 CDS Human protein_coding chr5:122515878 chr5:122515882 nonsynonymous SNV 0.873 4 25 hm5C_associated_SNPs_107187 0 0 0 0 1 PRDM6 chr5:122515841 3'AG 122515841 Downstream 42bp
chr10 71851628 71851628 1 + C A LUAD 71851627 + 71851607 71851647 41 AAACGATCCTCTCCCCACCCCCAGAGAAAAGAGGCAGGAAG AAACGATCCTCTCCCCACCCCAAGAGAAAAGAGGCAGGAAG < 41bp 0.491910639292811 0.756111653368533 0.19001201 0.2550624 prediction 0.512223306737065 Functional Gain - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71851627 chr10:71851628 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_107189 0 0 0 2 1 H2AFY2 chr10:71851710 5'GT 71851710 Upstream 83bp
chr17 1733324 1733324 1 + C A rs184577713 1733320 + 1733300 1733340 41 TCGGGCCAATAACTGCGCAGCGCGCGGGACCCGGGTGGGGA TCGGGCCAATAACTGCGCAGCGCGAGGGACCCGGGTGGGGA < 41bp 0.622945328641965 0.879055450866349 0.42319047 0.7970928 prediction 0.512220244448769 Functional Gain - RPA1 ENSG00000132383 UTR5 Human protein_coding chr17:1733320 chr17:1733324 . . 0 25 hm5C_associated_SNPs_107191 0 0 1 0 1 RPA1 chr17:1733420 5'GT 1733420 Upstream 97bp
chr4 77033594 77033594 1 + C A STAD 77033590 + 77033570 77033610 41 AAGCCATCCTTCTGCATCCTCGGGCAAACTGCTGCTTCCAC AAGCCATCCTTCTGCATCCTCGGGAAAACTGCTGCTTCCAC < 41bp 0.633979250838983 0.890062363291353 0.90943635 0.8977616 prediction 0.512166224904741 Functional Gain - ART3 ENSG00000156219 CDS Human protein_coding chr4:77033590 chr4:77033594 synonymous SNV . 0 25 hm5C_associated_SNPs_107196 0 0 0 6 1 ART3 chr4:77033539 3'AG 77033539 Downstream 56bp
chr11 48146663 48146663 1 + C A LGG 48146659 + 48146639 48146679 41 CTTGTCGGGTTAGAGCCTGGCACCCGATACAATGCCACCGT CTTGTCGGGTTAGAGCCTGGCACCAGATACAATGCCACCGT < 41bp 0.333848468943609 0.756061751201047 0.027916044 0.06557864 prediction 0.512123502402094 Functional Gain - PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48146659 chr11:48146663 synonymous SNV . 0 25 hm5C_associated_SNPs_107197 0 0 0 0 1 PTPRJ chr11:48146738 5'GT 48146738 Upstream 76bp
chr16 68390607 68390607 1 + C G rs373518587 68390606 + 68390586 68390626 41 CCCCCCTCTCCTTGACAGGCCCGGGCAGAGCCACGCAGCGG CCCCCCTCTCCTTGACAGGCCGGGGCAGAGCCACGCAGCGG < 41bp 0.438788920068346 0.756052878845707 0.10675138 0.3726992 prediction 0.512105757691415 Functional Gain - PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68390606 chr16:68390607 synonymous SNV . 0 22 hm5C_associated_SNPs_107198 0 0 1 0 1 PRMT7 chr16:68390604 3'AG 68390604 Downstream 4bp
chr19 45411026 45411026 1 + C A UCEC 45411022 + 45411002 45411042 41 ACTTGTTCCACACAGGATGCCAGGCCAAGGTGGAGCAAGCG ACTTGTTCCACACAGGATGCCAGGACAAGGTGGAGCAAGCG < 41bp 0.367846981195658 0.756051057992854 0.32637227 0.23419872 prediction 0.512102115985708 Functional Gain - APOE ENSG00000130203 CDS Human protein_coding chr19:45411022 chr19:45411026 nonsynonymous SNV 0.014 2 25 hm5C_associated_SNPs_107199 0 0 1 0 1 APOE chr19:45411017 3'AG 45411017 Downstream 10bp
chr1 203032982 203032982 1 + T C UCEC 203032980 + 203032960 203033000 41 TGGCCTATGGGGACATGAACCATGAGTGGATTGGGAATGAA TGGCCTATGGGGACATGAACCACGAGTGGATTGGGAATGAA < 41bp 0.555666658378781 0.811702262883335 0.161309 0.22111642 prediction 0.512071209009108 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203032980 chr1:203032982 synonymous SNV . 0 23 hm5C_associated_SNPs_107202 0 0 1 0 1 PPFIA4 chr1:203032956 3'AG 203032956 Downstream 27bp
chr8 22458457 22458457 1 + C G rs145988500 22458453 + 22458433 22458473 41 CCTGGAGTCACCAGCACCTACAGACGGATCCCCGACGCTGC CCTGGAGTCACCAGCACCTACAGAGGGATCCCCGACGCTGC < 41bp 0.580458857940118 0.836464176987699 0.73109907 0.8969376 prediction 0.512010638095162 Functional Gain - C8orf58 ENSG00000241852;ENSG00000248235 CDS Human other chr8:22458453 chr8:22458457 nonsynonymous SNV 0.985 3 25 hm5C_associated_SNPs_107207 0 0 0 0 1 C8orf58 chr8:22458395 3'AG 22458395 Downstream 63bp
chr9 34646774 34646774 1 + C A STAD 34646770 + 34646750 34646790 41 GCGGACGCCGCAGCAGCAACCTTCCGGGCAAACGGTAACTG GCGGACGCCGCAGCAGCAACCTTCAGGGCAAACGGTAACTG < 41bp 0.353507399134289 0.755989674904685 0.06789106 0.059182346 prediction 0.511979349809371 Functional Gain - GALT ENSG00000213930;ENSG00000258728 CDS Human other chr9:34646770 chr9:34646774 synonymous SNV . 0 25 hm5C_associated_SNPs_107209 0 0 1 0 2 GALT chr9:34646783 5'GT 34646783 Upstream 10bp
chr9 34646774 34646774 1 + C A STAD 34646770 + 34646750 34646790 41 GCGGACGCCGCAGCAGCAACCTTCCGGGCAAACGGTAACTG GCGGACGCCGCAGCAGCAACCTTCAGGGCAAACGGTAACTG < 41bp 0.353507399134289 0.755989674904685 0.06789106 0.059182346 prediction 0.511979349809371 Functional Gain - GALT ENSG00000213930;ENSG00000258728 CDS Human other chr9:34646770 chr9:34646774 synonymous SNV . 0 25 hm5C_associated_SNPs_107209 0 0 1 0 2 GALT chr9:34646864 5'GT 34646864 Upstream 91bp
chr3 9786133 9786133 1 + C T SKCM 9786132 + 9786112 9786152 41 AGCGCAAGCGGGGTAGGAGCCCCCGGCCCAGTTCGAGCTCA AGCGCAAGCGGGGTAGGAGCCTCCGGCCCAGTTCGAGCTCA < 41bp 0.498561422946357 0.755988995044951 0.3748995 0.6137541 prediction 0.511977990089902 Functional Gain - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9786132 chr3:9786133 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_107210 0 0 1 0 1 BRPF1 chr3:9786192 5'GT 9786192 Upstream 60bp
chr1 158324176 158324176 1 + C A COAD 158324172 + 158324152 158324192 41 TTCCCTCTCTCTCAGCTCCCCAGGCTCTACAATCCTATCAT TTCCCTCTCTCTCAGCTCCCCAGGATCTACAATCCTATCAT < 41bp 0.419372031899006 0.755942906320667 0.4077167 0.7321908 prediction 0.511885812641334 Functional Gain - CD1E ENSG00000158488 CDS Human protein_coding chr1:158324172 chr1:158324176 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_107213 0 0 0 0 1 CD1E chr1:158324167 3'AG 158324167 Downstream 10bp
chr3 47451454 47451454 1 + C T BRCA 47451453 + 47451433 47451473 41 GCCGCCGCCACGGCCCACAGCCCCAAAGCCGCTGCTGCCCC GCCGCCGCCACGGCCCACAGCTCCAAAGCCGCTGCTGCCCC < 41bp 0.490054796890586 0.75594155429437 0.12950286 0.9257005 prediction 0.51188310858874 Functional Gain - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47451453 chr3:47451454 synonymous SNV . 0 22 hm5C_associated_SNPs_107214 0 0 0 0 1 PTPN23 chr3:47451418 3'AG 47451418 Downstream 37bp
chr1 4772050 4772050 1 + C A rs148753165 4772049 + 4772029 4772069 41 GCTCGCCGTGGACCTGCCCGCCTGTGAGGCCCTGGGCCCGG GCTCGCCGTGGACCTGCCCGCATGTGAGGCCCTGGGCCCGG < 41bp 0.507561714795915 0.763472751690724 0.055372506 0.38892227 prediction 0.511822073789618 Functional Gain - AJAP1 ENSG00000196581 CDS Human protein_coding chr1:4772049 chr1:4772050 synonymous SNV . 0 22 hm5C_associated_SNPs_107218 0 0 0 0 1 AJAP1 chr1:4771960 3'AG 4771960 Downstream 91bp
chr10 11797517 11797517 1 + C G rs145453628 11797513 + 11797493 11797533 41 CAGCTGCGACATTGCCGTGGCGAGCGACAAGTCCTCTTTTG CAGCTGCGACATTGCCGTGGCGAGGGACAAGTCCTCTTTTG < 41bp 0.555958324312894 0.811845654533982 0.8399114 0.9221337 prediction 0.511774660442177 Functional Gain - ECHDC3 ENSG00000134463 CDS Human protein_coding chr10:11797513 chr10:11797517 nonsynonymous SNV 0.943 4 25 hm5C_associated_SNPs_107219 0 0 0 0 1 ECHDC3 chr10:11797607 5'GT 11797607 Upstream 91bp
chr3 148601523 148601523 1 + T C PRAD 148601521 + 148601501 148601541 41 CTGAATGAAATCAAGGTTTACATCACCTTCCATTCCTACTC CTGAATGAAATCAAGGTTTACACCACCTTCCATTCCTACTC < 41bp 0.469659967518936 0.755860158939863 0.019010663 0.008859783 prediction 0.511720317879727 Functional Gain - CPA3 ENSG00000163751 CDS Human protein_coding chr3:148601521 chr3:148601523 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_107222 0 0 0 0 1 CPA3 chr3:148601602 5'GT 148601602 Upstream 80bp
chr16 30680217 30680217 1 + T C COAD 30680215 + 30680195 30680235 41 TTCCTGCCTGGGTCCGGCCCCCTGAGGCCGCCCGGACTCCA TTCCTGCCTGGGTCCGGCCCCCCGAGGCCGCCCGGACTCCA < 41bp 0.53262437372995 0.788484025555405 0.26798055 0.1570195 prediction 0.511719303650911 Functional Gain - FBRS ENSG00000156860 CDS Human protein_coding chr16:30680215 chr16:30680217 synonymous SNV . 0 23 hm5C_associated_SNPs_107223 0 0 1 0 1 FBRS chr16:30680300 5'GT 30680300 Upstream 84bp
chr10 11908739 11908739 1 + C A rs149002089 11908735 + 11908715 11908755 41 CGACTTAGTGCAGCCAGCACCTGGCGCCGGGGAAGCCGAGG CGACTTAGTGCAGCCAGCACCTGGAGCCGGGGAAGCCGAGG < 41bp 0.668187127829354 0.923985489121312 0.24106482 0.55266356 prediction 0.511596722583916 Functional Gain - PROSER2 ENSG00000148426 CDS Human protein_coding chr10:11908735 chr10:11908739 synonymous SNV . 0 25 hm5C_associated_SNPs_107230 0 0 0 0 1 PROSER2 chr10:11908782 5'GT 11908782 Upstream 44bp
chr17 27075086 27075086 1 + C G LUSC 27075085 + 27075065 27075105 41 ATTCCCTGCCCTAATCGCTGCCCCATGAAGCTGAGCCGCCG ATTCCCTGCCCTAATCGCTGCGCCATGAAGCTGAGCCGCCG < 41bp 0.435440472237425 0.755794967050414 0.16221377 0.12295732 prediction 0.511589934100828 Functional Gain - TRAF4 ENSG00000076604 CDS Human protein_coding chr17:27075085 chr17:27075086 nonsynonymous SNV 0.978 0 22 hm5C_associated_SNPs_107231 0 0 1 0 1 TRAF4 chr17:27075035 3'AG 27075035 Downstream 52bp
chr19 5684914 5684914 1 + C G BLCA 5684913 + 5684893 5684933 41 ATTGGGATGACAACTTCGACCCAGGTGAGCACCTGGGGTTG ATTGGGATGACAACTTCGACCGAGGTGAGCACCTGGGGTTG < 41bp 0.575524338880268 0.831263521562854 0.8388785 0.9123388 prediction 0.511478365365171 Functional Gain - HSD11B1L ENSG00000167733 CDS Human protein_coding chr19:5684913 chr19:5684914 nonsynonymous SNV 0.229 3 22 hm5C_associated_SNPs_107238 0 0 0 0 2 HSD11B1L chr19:5684830 3'AG 5684830 Downstream 85bp
chr19 5684914 5684914 1 + C G BLCA 5684913 + 5684893 5684933 41 ATTGGGATGACAACTTCGACCCAGGTGAGCACCTGGGGTTG ATTGGGATGACAACTTCGACCGAGGTGAGCACCTGGGGTTG < 41bp 0.575524338880268 0.831263521562854 0.8388785 0.9123388 prediction 0.511478365365171 Functional Gain - HSD11B1L ENSG00000167733 CDS Human protein_coding chr19:5684913 chr19:5684914 nonsynonymous SNV 0.229 3 22 hm5C_associated_SNPs_107238 0 0 0 0 2 HSD11B1L chr19:5684916 5'GT 5684916 Upstream 3bp
chr1 161069201 161069201 1 + C A UCEC 161069200 + 161069180 161069220 41 GTGCGGCCCTGCTCCAAACTCCTGGACCCCATCCAGGTCAT GTGCGGCCCTGCTCCAAACTCATGGACCCCATCCAGGTCAT < 41bp 0.49342356832443 0.75573548341229 0.22881788 0.36556274 prediction 0.511470966824581 Functional Gain - KLHDC9 ENSG00000162755 CDS Human protein_coding chr1:161069200 chr1:161069201 nonsynonymous SNV 0.708 2 22 hm5C_associated_SNPs_107239 0 0 1 0 2 KLHDC9 chr1:161069136 3'AG 161069136 Downstream 66bp
chr1 161069201 161069201 1 + C A UCEC 161069200 + 161069180 161069220 41 GTGCGGCCCTGCTCCAAACTCCTGGACCCCATCCAGGTCAT GTGCGGCCCTGCTCCAAACTCATGGACCCCATCCAGGTCAT < 41bp 0.49342356832443 0.75573548341229 0.22881788 0.36556274 prediction 0.511470966824581 Functional Gain - KLHDC9 ENSG00000162755 CDS Human protein_coding chr1:161069200 chr1:161069201 nonsynonymous SNV 0.708 2 22 hm5C_associated_SNPs_107239 0 0 1 0 2 KLHDC9 chr1:161069295 5'GT 161069295 Upstream 95bp
chr19 11486219 11486219 1 + C G HNSC 11486218 + 11486198 11486238 41 TTCCAGTACCCACCCTCAACCCGAGAGCTTTTCCGGCTCCT TTCCAGTACCCACCCTCAACCGGAGAGCTTTTCCGGCTCCT < 41bp 0.435105618679741 0.755708610683485 0.3149783 0.8728851 prediction 0.511417221366971 Functional Gain - SWSAP1 ENSG00000173928 CDS Human protein_coding chr19:11486218 chr19:11486219 nonsynonymous SNV 0.553 0 22 hm5C_associated_SNPs_107241 0 0 1 0 1 SWSAP1 chr19:11486189 3'AG 11486189 Downstream 31bp
chr12 56548603 56548603 1 + T A COAD 56548599 + 56548579 56548619 41 TGCTTTTTTCTTCCACAGATCGAGTTTAACAAGGACCAGCT TGCTTTTTTCTTCCACAGATCGAGATTAACAAGGACCAGCT < 41bp 0.438444543343075 0.755701749608414 0.45861837 0.904093 prediction 0.511403499216827 Functional Gain - MYL6B ENSG00000196465 CDS Human protein_coding chr12:56548599 chr12:56548603 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_107243 0 0 0 0 1 MYL6B chr12:56548597 3'AG 56548597 Downstream 7bp
chr3 138174129 138174129 1 + C A HNSC 138174128 + 138174108 138174148 41 ATCCGAGAGAAGAGCATCCACCTGAGGACCTTTACCTTTAC ATCCGAGAGAAGAGCATCCACATGAGGACCTTTACCTTTAC < 41bp 0.520030063946985 0.775725698916713 0.100130886 0.12633803 prediction 0.511391269939457 Functional Gain - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138174128 chr3:138174129 nonsynonymous SNV 0.707 5 22 hm5C_associated_SNPs_107244 0 0 0 0 2 ESYT3 chr3:138174036 3'AG 138174036 Downstream 94bp
chr3 138174129 138174129 1 + C A HNSC 138174128 + 138174108 138174148 41 ATCCGAGAGAAGAGCATCCACCTGAGGACCTTTACCTTTAC ATCCGAGAGAAGAGCATCCACATGAGGACCTTTACCTTTAC < 41bp 0.520030063946985 0.775725698916713 0.100130886 0.12633803 prediction 0.511391269939457 Functional Gain - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138174128 chr3:138174129 nonsynonymous SNV 0.707 5 22 hm5C_associated_SNPs_107244 0 0 0 0 2 ESYT3 chr3:138174170 5'GT 138174170 Upstream 42bp
chr16 20497948 20497948 1 + C A STAD 20497944 + 20497924 20497964 41 CTGTCACAGGGAAAATTCAACGAGCCAAGCTTCGAGACAAG CTGTCACAGGGAAAATTCAACGAGACAAGCTTCGAGACAAG < 41bp 0.372141326074555 0.755679051465084 0.3776998 0.53566134 prediction 0.511358102930167 Functional Gain - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20497944 chr16:20497948 nonsynonymous SNV 0.035 0 25 hm5C_associated_SNPs_107246 0 0 0 0 1 ACSM2A chr16:20497896 3'AG 20497896 Downstream 53bp
chr19 35524595 35524595 1 + C A OV 35524591 + 35524571 35524611 41 CTGCTCTTCTTCGAAAACTACGAGCACAACACCAGCGTCGT CTGCTCTTCTTCGAAAACTACGAGAACAACACCAGCGTCGT < 41bp 0.343310777570258 0.755673971937342 0.31473216 0.3556564 prediction 0.511347943874685 Functional Gain - SCN1B ENSG00000105711 CDS Human protein_coding chr19:35524591 chr19:35524595 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_107248 0 0 1 0 1 SCN1B chr19:35524643 5'GT 35524643 Upstream 49bp
chr2 85361161 85361161 1 + T C rs544262877 85361159 + 85361139 85361179 41 GCGGAGAGGCGCCCGCAGCCCGTCCGGGACACTTTCCAGAA GCGGAGAGGCGCCCGCAGCCCGCCCGGGACACTTTCCAGAA < 41bp 0.511704005108802 0.767371846511658 0.17100328 0.20956376 prediction 0.511335682805711 Functional Gain - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85361159 chr2:85361161 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_107249 0 0 0 0 2 TCF7L1 chr2:85361139 3'AG 85361139 Downstream 23bp
chr2 85361161 85361161 1 + T C rs544262877 85361159 + 85361139 85361179 41 GCGGAGAGGCGCCCGCAGCCCGTCCGGGACACTTTCCAGAA GCGGAGAGGCGCCCGCAGCCCGCCCGGGACACTTTCCAGAA < 41bp 0.511704005108802 0.767371846511658 0.17100328 0.20956376 prediction 0.511335682805711 Functional Gain - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85361159 chr2:85361161 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_107249 0 0 0 0 2 TCF7L1 chr2:85361202 5'GT 85361202 Upstream 42bp
chr1 14142943 14142943 1 + C T SKCM 14142942 + 14142922 14142962 41 CTACAGCCTCCGCTTGGCGTCCCGATGCTCTCCACCAGCGG CTACAGCCTCCGCTTGGCGTCTCGATGCTCTCCACCAGCGG < 41bp 0.496460910221476 0.755665045353948 0.049291223 0.8205901 prediction 0.511330090707895 Functional Gain - PRDM2 ENSG00000116731 CDS Human protein_coding chr1:14142942 chr1:14142943 nonsynonymous SNV 0.709 1 22 hm5C_associated_SNPs_107250 0 0 0 0 1 PRDM2 chr1:14142922 3'AG 14142922 Downstream 22bp
chr11 61537745 61537745 1 + C A UCEC 61537744 + 61537724 61537764 41 ACCTCCTGCGCACGATAACCCCTGAGACACTGTGCCACGTG ACCTCCTGCGCACGATAACCCATGAGACACTGTGCCACGTG < 41bp 0.507348194347923 0.763002080789721 0.23784158 0.30494517 prediction 0.511307772883597 Functional Gain - MYRF ENSG00000124920 CDS Human protein_coding chr11:61537744 chr11:61537745 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_107252 0 0 0 0 1 MYRF chr11:61537718 3'AG 61537718 Downstream 28bp
chr1 183205648 183205648 1 + C G LUSC 183205644 + 183205624 183205664 41 AGTTGACAAGGGAGGCCACTCAAGCGGAAATTGAAGCAGAT AGTTGACAAGGGAGGCCACTCAAGGGGAAATTGAAGCAGAT < 41bp 0.467228273817637 0.755646130464261 0.8547205 0.9296291 prediction 0.511292260928522 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183205644 chr1:183205648 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_107253 0 0 0 0 2 LAMC2 chr1:183205595 3'AG 183205595 Downstream 54bp
chr1 183205648 183205648 1 + C G LUSC 183205644 + 183205624 183205664 41 AGTTGACAAGGGAGGCCACTCAAGCGGAAATTGAAGCAGAT AGTTGACAAGGGAGGCCACTCAAGGGGAAATTGAAGCAGAT < 41bp 0.467228273817637 0.755646130464261 0.8547205 0.9296291 prediction 0.511292260928522 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183205644 chr1:183205648 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_107253 0 0 0 0 2 LAMC2 chr1:183205739 5'GT 183205739 Upstream 92bp
chr19 11560203 11560203 1 + C G rs368935929 11560202 + 11560182 11560222 41 GCCACCGCCTGAAGCACCCACCGAAGACGACCATGACGAGC GCCACCGCCTGAAGCACCCACGGAAGACGACCATGACGAGC < 41bp 0.595110379134439 0.850753966544214 0.13975564 0.40077496 prediction 0.511287174819548 Functional Gain - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11560202 chr19:11560203 synonymous SNV . 0 22 hm5C_associated_SNPs_107255 0 0 1 0 1 PRKCSH chr19:11560243 5'GT 11560243 Upstream 41bp
chr19 48342644 48342644 1 + C G HNSC 48342640 + 48342620 48342660 41 AGCAGCAGAAACAGCAGCAGCAGCCCCCAGGGGGCCAGGCC AGCAGCAGAAACAGCAGCAGCAGCGCCCAGGGGGCCAGGCC < 41bp 0.459822502504087 0.755639662793803 0.30118397 0.4622147 prediction 0.511279325587606 Functional Gain - CRX ENSG00000105392 CDS Human protein_coding chr19:48342640 chr19:48342644 nonsynonymous SNV 0.922 3 25 hm5C_associated_SNPs_107257 0 0 0 0 1 CRX chr19:48342577 3'AG 48342577 Downstream 68bp
chr12 58015593 58015593 1 + C A STAD 58015589 + 58015569 58015609 41 TTGAACGTGAGATTCCGAGACCGGCTACCCACGCCGATCCC TTGAACGTGAGATTCCGAGACCGGATACCCACGCCGATCCC < 41bp 0.34148497337789 0.755628826426967 0.6165312 0.8557062 prediction 0.511257652853935 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58015589 chr12:58015593 nonsynonymous SNV 0.816 3 25 hm5C_associated_SNPs_107258 0 0 1 0 1 SLC26A10 chr12:58015625 5'GT 58015625 Upstream 33bp
chr14 24880346 24880346 1 + C A STAD 24880345 + 24880325 24880365 41 GCAGTGCAGTTTTTCTGGAACCGGGGACACCGAGAGGTCAC GCAGTGCAGTTTTTCTGGAACAGGGGACACCGAGAGGTCAC < 41bp 0.507974385799728 0.763600694326505 0.8512089 0.83731747 prediction 0.511252617053553 Functional Gain - NYNRIN ENSG00000205978 CDS Human protein_coding chr14:24880345 chr14:24880346 synonymous SNV . 0 22 hm5C_associated_SNPs_107259 0 0 0 0 2 NYNRIN chr14:24880282 3'AG 24880282 Downstream 65bp
chr14 24880346 24880346 1 + C A STAD 24880345 + 24880325 24880365 41 GCAGTGCAGTTTTTCTGGAACCGGGGACACCGAGAGGTCAC GCAGTGCAGTTTTTCTGGAACAGGGGACACCGAGAGGTCAC < 41bp 0.507974385799728 0.763600694326505 0.8512089 0.83731747 prediction 0.511252617053553 Functional Gain - NYNRIN ENSG00000205978 CDS Human protein_coding chr14:24880345 chr14:24880346 synonymous SNV . 0 22 hm5C_associated_SNPs_107259 0 0 0 0 2 NYNRIN chr14:24880412 5'GT 24880412 Upstream 67bp
chr7 148311348 148311348 1 + C A UCEC 148311344 + 148311324 148311364 41 GTTACCTAGATCTGCTAACTCTCTCTTACAAGCCTGGGAGG GTTACCTAGATCTGCTAACTCTCTATTACAAGCCTGGGAGG < 41bp 0.334142315172408 0.755620154034988 0.10579601 0.91499454 prediction 0.511240308069976 Functional Gain - C7orf33 ENSG00000170279 CDS Human protein_coding chr7:148311344 chr7:148311348 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_107260 0 0 0 0 1 C7orf33 chr7:148311388 5'GT 148311388 Upstream 41bp
chr15 38591666 38591666 1 + T C LGG 38591664 + 38591644 38591684 41 GGAGGGAGTGGACTAAGCAGCGTCACTGTCTTCAAAGTCCC GGAGGGAGTGGACTAAGCAGCGCCACTGTCTTCAAAGTCCC < 41bp 0.557593418077033 0.81318920007374 0.1341247 0.12279409 prediction 0.511191563993413 Functional Gain - SPRED1 ENSG00000166068 CDS Human protein_coding chr15:38591664 chr15:38591666 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_107263 0 0 1 0 2 SPRED1 chr15:38591574 3'AG 38591574 Downstream 93bp
chr15 38591666 38591666 1 + T C LGG 38591664 + 38591644 38591684 41 GGAGGGAGTGGACTAAGCAGCGTCACTGTCTTCAAAGTCCC GGAGGGAGTGGACTAAGCAGCGCCACTGTCTTCAAAGTCCC < 41bp 0.557593418077033 0.81318920007374 0.1341247 0.12279409 prediction 0.511191563993413 Functional Gain - SPRED1 ENSG00000166068 CDS Human protein_coding chr15:38591664 chr15:38591666 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_107263 0 0 1 0 2 SPRED1 chr15:38591748 5'GT 38591748 Upstream 83bp
chr7 137689557 137689557 1 + T A rs73729542 137689553 + 137689533 137689573 41 GCCAGAGGACCCAGCTAAGCCACGTTCAACTTCCTGACCTG GCCAGAGGACCCAGCTAAGCCACGATCAACTTCCTGACCTG < 41bp 0.53126062773025 0.786832091466523 0.34554493 0.41391197 prediction 0.511142927472546 Functional Gain - CREB3L2;AKR1D1 ENSG00000182158;ENSG00000234639 intergenic Human other chr7:137689553 chr7:137689557 . . 0 25 hm5C_associated_SNPs_107264 0 0 0 0 1 CREB3L2;AKR1D1 chr7:137689577 5'GT 137689577 Upstream 21bp
chr16 3707293 3707293 1 + C T rs34186031 3707292 + 3707272 3707312 41 CCCACCTTCCAGTGGCTGATCCCCGACAGCGCTGACACCAC CCCACCTTCCAGTGGCTGATCTCCGACAGCGCTGACACCAC < 41bp 0.518069835411609 0.773639577511151 0.087765515 0.8327613 prediction 0.511139484199085 Functional Gain - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707292 chr16:3707293 nonsynonymous SNV 0.330 1 22 hm5C_associated_SNPs_107265 0 0 1 0 1 DNASE1 chr16:3707342 5'GT 3707342 Upstream 50bp
chr12 122689161 122689161 1 + C A rs12827843 122689157 + 122689137 122689177 41 AGCACGGAGACAGTCTCCAGCTGCCGTTCATGCTTCCTCCC AGCACGGAGACAGTCTCCAGCTGCAGTTCATGCTTCCTCCC < 41bp 0.521767163844852 0.777335724077778 0.20939305 0.22721252 prediction 0.511137120465852 Functional Gain - B3GNT4 ENSG00000176383 UTR5 Human protein_coding chr12:122689157 chr12:122689161 . . 0 25 hm5C_associated_SNPs_107266 0 0 0 0 2 B3GNT4 chr12:122689069 3'AG 122689069 Downstream 93bp
chr12 122689161 122689161 1 + C A rs12827843 122689157 + 122689137 122689177 41 AGCACGGAGACAGTCTCCAGCTGCCGTTCATGCTTCCTCCC AGCACGGAGACAGTCTCCAGCTGCAGTTCATGCTTCCTCCC < 41bp 0.521767163844852 0.777335724077778 0.20939305 0.22721252 prediction 0.511137120465852 Functional Gain - B3GNT4 ENSG00000176383 UTR5 Human protein_coding chr12:122689157 chr12:122689161 . . 0 25 hm5C_associated_SNPs_107266 0 0 0 0 2 B3GNT4 chr12:122689231 5'GT 122689231 Upstream 71bp
chr20 61917752 61917752 1 + T C rs544748417 61917750 + 61917730 61917770 41 GGTAGTAAGGGATGGCGGGACGTCACCACCTTTTTTTCGGG GGTAGTAAGGGATGGCGGGACGCCACCACCTTTTTTTCGGG < 41bp 0.523370257997084 0.778926373137746 0.19722289 0.23664346 prediction 0.511112230281324 Functional Gain - ARFGAP1 ENSG00000101199 CDS Human protein_coding chr20:61917750 chr20:61917752 nonsynonymous SNV 0.973 0 23 hm5C_associated_SNPs_107268 0 0 1 0 3 ARFGAP1 chr20:61917718 3'AG 61917718 Downstream 35bp
chr20 61917752 61917752 1 + T C rs544748417 61917750 + 61917730 61917770 41 GGTAGTAAGGGATGGCGGGACGTCACCACCTTTTTTTCGGG GGTAGTAAGGGATGGCGGGACGCCACCACCTTTTTTTCGGG < 41bp 0.523370257997084 0.778926373137746 0.19722289 0.23664346 prediction 0.511112230281324 Functional Gain - ARFGAP1 ENSG00000101199 CDS Human protein_coding chr20:61917750 chr20:61917752 nonsynonymous SNV 0.973 0 23 hm5C_associated_SNPs_107268 0 0 1 0 3 ARFGAP1 chr20:61917724 3'AG 61917724 Downstream 29bp
chr20 61917752 61917752 1 + T C rs544748417 61917750 + 61917730 61917770 41 GGTAGTAAGGGATGGCGGGACGTCACCACCTTTTTTTCGGG GGTAGTAAGGGATGGCGGGACGCCACCACCTTTTTTTCGGG < 41bp 0.523370257997084 0.778926373137746 0.19722289 0.23664346 prediction 0.511112230281324 Functional Gain - ARFGAP1 ENSG00000101199 CDS Human protein_coding chr20:61917750 chr20:61917752 nonsynonymous SNV 0.973 0 23 hm5C_associated_SNPs_107268 0 0 1 0 3 ARFGAP1 chr20:61917794 5'GT 61917794 Upstream 43bp
chr9 135374905 135374905 1 + C T OV 135374904 + 135374884 135374924 41 TACCGTCAGCTCAATGACATCCGCATCAGTGACCAGGATGA TACCGTCAGCTCAATGACATCTGCATCAGTGACCAGGATGA < 41bp 0.502584920710963 0.758137534593356 0.185906 0.1670666 prediction 0.511105227764785 Functional Gain - CFAP77 ENSG00000188523 CDS Human protein_coding chr9:135374904 chr9:135374905 nonsynonymous SNV 0.783 4 22 hm5C_associated_SNPs_107269 0 0 0 0 1 CFAP77 chr9:135374987 5'GT 135374987 Upstream 83bp
chr2 241992606 241992606 1 + C A BLCA 241992602 + 241992582 241992622 41 GCCCCCCGGAGGAGGTGAAGCACGCCACACTGCGCTTCAAC GCCCCCCGGAGGAGGTGAAGCACGACACACTGCGCTTCAAC < 41bp 0.349254186636974 0.755520114624876 0.41617742 0.55174935 prediction 0.511040229249751 Functional Gain - SNED1 ENSG00000162804 CDS Human protein_coding chr2:241992602 chr2:241992606 nonsynonymous SNV 0.786 1 25 hm5C_associated_SNPs_107274 0 0 0 0 1 SNED1 chr2:241992570 3'AG 241992570 Downstream 37bp
chr3 131080839 131080839 1 + C A UCEC 131080835 + 131080815 131080855 41 CGCTGGGGCCAGGCTAGAGGCATGCCTGCTATGCGCTCCTG CGCTGGGGCCAGGCTAGAGGCATGACTGCTATGCGCTCCTG < 41bp 0.64434603224971 0.899846574747879 0.29901177 0.44852722 prediction 0.511001084996338 Functional Gain - NUDT16P1 ENSG00000246082 ncRNA_exonic Human transcribed_unitary_pseudogene chr3:131080835 chr3:131080839 . . 0 25 hm5C_associated_SNPs_107276 0 0 1 0 1 NUDT16P1 chr3:131080912 5'GT 131080912 Upstream 74bp
chr10 101464242 101464242 1 + T C LGG 101464240 + 101464220 101464260 41 AGGAAGGTGTCCGACAAGCCCATGGTAGCTGGTTCCGTCTC AGGAAGGTGTCCGACAAGCCCACGGTAGCTGGTTCCGTCTC < 41bp 0.511634478462367 0.767104315636185 0.3984537 0.4199776 prediction 0.510939674347634 Functional Gain - ENTPD7 ENSG00000198018 CDS Human protein_coding chr10:101464240 chr10:101464242 synonymous SNV . 0 23 hm5C_associated_SNPs_107280 0 0 1 0 1 ENTPD7 chr10:101464209 3'AG 101464209 Downstream 34bp
chr7 139655310 139655310 1 + C G rs138612126 139655309 + 139655289 139655329 41 GCCAGCGTCGCCTTTGGCACCCCGGTGGACTCCTGGCAGGC GCCAGCGTCGCCTTTGGCACCGCGGTGGACTCCTGGCAGGC < 41bp 0.606823834528228 0.862291821616269 0.62489116 0.89015615 prediction 0.510935974176083 Functional Gain - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139655309 chr7:139655310 nonsynonymous SNV 0.813 0 22 hm5C_associated_SNPs_107281 0 0 0 0 2 TBXAS1 chr7:139655258 3'AG 139655258 Downstream 53bp
chr7 139655310 139655310 1 + C G rs138612126 139655309 + 139655289 139655329 41 GCCAGCGTCGCCTTTGGCACCCCGGTGGACTCCTGGCAGGC GCCAGCGTCGCCTTTGGCACCGCGGTGGACTCCTGGCAGGC < 41bp 0.606823834528228 0.862291821616269 0.62489116 0.89015615 prediction 0.510935974176083 Functional Gain - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139655309 chr7:139655310 nonsynonymous SNV 0.813 0 22 hm5C_associated_SNPs_107281 0 0 0 0 2 TBXAS1 chr7:139655406 5'GT 139655406 Upstream 97bp
chr7 5959528 5959528 1 + T C rs143251519 5959526 + 5959506 5959546 41 TGCCGAAGACTGGACAGCATCGTTGGGCCCCAGCTCACAGT TGCCGAAGACTGGACAGCATCGCTGGGCCCCAGCTCACAGT < 41bp 0.54404817265731 0.799515381380548 0.14081275 0.17151305 prediction 0.510934417446476 Functional Gain - CCZ1 ENSG00000122674 CDS Human protein_coding chr7:5959526 chr7:5959528 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_107282 0 0 0 0 2 CCZ1 chr7:5959480 3'AG 5959480 Downstream 49bp
chr7 5959528 5959528 1 + T C rs143251519 5959526 + 5959506 5959546 41 TGCCGAAGACTGGACAGCATCGTTGGGCCCCAGCTCACAGT TGCCGAAGACTGGACAGCATCGCTGGGCCCCAGCTCACAGT < 41bp 0.54404817265731 0.799515381380548 0.14081275 0.17151305 prediction 0.510934417446476 Functional Gain - CCZ1 ENSG00000122674 CDS Human protein_coding chr7:5959526 chr7:5959528 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_107282 0 0 0 0 2 CCZ1 chr7:5959597 5'GT 5959597 Upstream 70bp
chr2 122485894 122485894 1 - A G SKCM 122485896 - 122485876 122485916 41 AGAAAAAAGTTTCAGGTACTCTTGACACTCCTGAGAAGACT AGAAAAAAGTTTCAGGTACTCTCGACACTCCTGAGAAGACT < 41bp 0.54205032528109 0.797513745637283 0.11383495 0.58371526 prediction 0.510926840712387 Functional Gain - NIFK ENSG00000155438 CDS Human protein_coding chr2:122485896 chr2:122485894 synonymous SNV . 0 23 hm5C_associated_SNPs_107283 0 0 1 0 2 NIFK chr2:122485864 5'GT 122485864 Upstream 31bp
chr2 122485894 122485894 1 - A G SKCM 122485896 - 122485876 122485916 41 AGAAAAAAGTTTCAGGTACTCTTGACACTCCTGAGAAGACT AGAAAAAAGTTTCAGGTACTCTCGACACTCCTGAGAAGACT < 41bp 0.54205032528109 0.797513745637283 0.11383495 0.58371526 prediction 0.510926840712387 Functional Gain - NIFK ENSG00000155438 CDS Human protein_coding chr2:122485896 chr2:122485894 synonymous SNV . 0 23 hm5C_associated_SNPs_107283 0 0 1 0 2 NIFK chr2:122485932 3'AG 122485932 Downstream 39bp
chr16 67917918 67917918 1 + T C CESC 67917916 + 67917896 67917936 41 GACCCCATCACTCGGGACCACATGGGCTCCGTTATGGCCCA GACCCCATCACTCGGGACCACACGGGCTCCGTTATGGCCCA < 41bp 0.510267495723387 0.765719611778119 0.2745518 0.2980989 prediction 0.510904232109463 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67917916 chr16:67917918 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_107284 0 0 1 0 1 EDC4 chr16:67917859 3'AG 67917859 Downstream 60bp
chr19 39589701 39589701 1 + C A STAD 39589700 + 39589680 39589720 41 CGTCTGGCTGTGTTTGGAGACCTGGGGGCTGACAACCCGAA CGTCTGGCTGTGTTTGGAGACATGGGGGCTGACAACCCGAA < 41bp 0.512164912716005 0.767611548884153 0.62458444 0.8505401 prediction 0.510893272336296 Functional Gain - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39589700 chr19:39589701 nonsynonymous SNV 0.992 1 22 hm5C_associated_SNPs_107285 0 0 0 0 1 ACP7 chr19:39589782 5'GT 39589782 Upstream 82bp
chr6 88362867 88362867 1 + T C LUSC 88362865 + 88362845 88362885 41 AGGATGAACTGATGACCATACTTGAGAAATGTTTCAAGGTT AGGATGAACTGATGACCATACTCGAGAAATGTTTCAAGGTT < 41bp 0.482205730292593 0.755440948780338 0.16988379 0.43746543 prediction 0.510881897560675 Functional Gain - ORC3 ENSG00000135336 CDS Human protein_coding chr6:88362865 chr6:88362867 synonymous SNV . 0 23 hm5C_associated_SNPs_107287 0 0 0 4 1 ORC3 chr6:88362834 3'AG 88362834 Downstream 34bp
chr7 6617262 6617262 1 + C G rs182391055 6617261 + 6617241 6617281 41 CTCGCCCGAGTCCGGGGCGGCCCCGGTGTCCCCTCCGAGCC CTCGCCCGAGTCCGGGGCGGCGCCGGTGTCCCCTCCGAGCC < 41bp 0.535041294698478 0.790468631222349 0.47924557 0.6111922 prediction 0.510854673047741 Functional Gain - ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617261 chr7:6617262 . . 0 22 hm5C_associated_SNPs_107289 0 0 1 0 2 ZDHHC4 chr7:6617221 3'AG 6617221 Downstream 42bp
chr7 6617262 6617262 1 + C G rs182391055 6617261 + 6617241 6617281 41 CTCGCCCGAGTCCGGGGCGGCCCCGGTGTCCCCTCCGAGCC CTCGCCCGAGTCCGGGGCGGCGCCGGTGTCCCCTCCGAGCC < 41bp 0.535041294698478 0.790468631222349 0.47924557 0.6111922 prediction 0.510854673047741 Functional Gain - ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617261 chr7:6617262 . . 0 22 hm5C_associated_SNPs_107289 0 0 1 0 2 ZDHHC4 chr7:6617351 5'GT 6617351 Upstream 90bp
chrX 51637766 51637766 1 + C A OV 51637762 + 51637742 51637782 41 CAGTCTGTCACCCCCTCCCCCAGCCTCCTGCCTCCACCCTC CAGTCTGTCACCCCCTCCCCCAGCATCCTGCCTCCACCCTC < 41bp 0.346160448782519 0.755408368596955 0.07211107 0.12842947 prediction 0.510816737193911 Functional Gain - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51637762 chrX:51637766 nonsynonymous SNV 0.149 1 25 hm5C_associated_SNPs_107294 0 0 1 0 1 MAGED1 chrX:51637723 3'AG 51637723 Downstream 44bp
chr19 50208005 50208005 1 + C T SKCM 50208004 + 50207984 50208024 41 GGAATTTGTGTACCTGCGCTCCCGAAATCCGCTGATGGTGA GGAATTTGTGTACCTGCGCTCTCGAAATCCGCTGATGGTGA < 41bp 0.520712149548628 0.776098900593948 0.22776434 0.9076997 prediction 0.510773502090641 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50208004 chr19:50208005 synonymous SNV . 0 22 hm5C_associated_SNPs_107296 0 0 0 0 2 CPT1C chr19:50207967 3'AG 50207967 Downstream 39bp
chr19 50208005 50208005 1 + C T SKCM 50208004 + 50207984 50208024 41 GGAATTTGTGTACCTGCGCTCCCGAAATCCGCTGATGGTGA GGAATTTGTGTACCTGCGCTCTCGAAATCCGCTGATGGTGA < 41bp 0.520712149548628 0.776098900593948 0.22776434 0.9076997 prediction 0.510773502090641 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50208004 chr19:50208005 synonymous SNV . 0 22 hm5C_associated_SNPs_107296 0 0 0 0 2 CPT1C chr19:50208044 5'GT 50208044 Upstream 40bp
chr3 183906908 183906908 1 + C G LUAD 183906904 + 183906884 183906924 41 CAGGTGGCTGGAGGATGAGGCTGGCCCTGGCCCGGGCCCTC CAGGTGGCTGGAGGATGAGGCTGGGCCTGGCCCGGGCCCTC < 41bp 0.584798431867148 0.840184293481201 0.8931129 0.93001586 prediction 0.510771723228107 Functional Gain - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183906904 chr3:183906908 nonsynonymous SNV 0.992 5 25 hm5C_associated_SNPs_107297 0 0 1 0 2 ABCF3 chr3:183906876 3'AG 183906876 Downstream 33bp
chr3 183906908 183906908 1 + C G LUAD 183906904 + 183906884 183906924 41 CAGGTGGCTGGAGGATGAGGCTGGCCCTGGCCCGGGCCCTC CAGGTGGCTGGAGGATGAGGCTGGGCCTGGCCCGGGCCCTC < 41bp 0.584798431867148 0.840184293481201 0.8931129 0.93001586 prediction 0.510771723228107 Functional Gain - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183906904 chr3:183906908 nonsynonymous SNV 0.992 5 25 hm5C_associated_SNPs_107297 0 0 1 0 2 ABCF3 chr3:183906932 5'GT 183906932 Upstream 25bp
chr11 45926374 45926374 1 + C A HNSC 45926373 + 45926353 45926393 41 GGCGTCAAGGCCGATGACTCCCAGGAGGCCAAGGTGACTTC GGCGTCAAGGCCGATGACTCCAAGGAGGCCAAGGTGACTTC < 41bp 0.514301968623003 0.769686040497955 0.30347335 0.39490402 prediction 0.510768143749903 Functional Gain - MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926373 chr11:45926374 nonsynonymous SNV 0.993 0 22 hm5C_associated_SNPs_107298 0 0 0 0 1 MAPK8IP1 chr11:45926385 5'GT 45926385 Upstream 12bp
chr19 39963553 39963553 1 + C T SKCM 39963552 + 39963532 39963572 41 CGGCCAGACCGTGCGCATCTCCCAGGGGCCCTACAAAGGTG CGGCCAGACCGTGCGCATCTCTCAGGGGCCCTACAAAGGTG < 41bp 0.499046280738318 0.755380460846804 0.17731881 0.057542205 prediction 0.510760921693607 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39963552 chr19:39963553 synonymous SNV . 0 22 hm5C_associated_SNPs_107299 0 0 1 0 1 SUPT5H chr19:39963569 5'GT 39963569 Upstream 17bp
chr1 22846616 22846616 1 + C T UCEC 22846615 + 22846595 22846635 41 TTCCCCACTCTTCAGGATCACCGGAAGCACATCCATGAGGT TTCCCCACTCTTCAGGATCACTGGAAGCACATCCATGAGGT < 41bp 0.500167185698129 0.755533566404968 0.6138717 0.5966767 prediction 0.510732761413678 Functional Gain - ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22846615 chr1:22846616 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_107302 0 0 1 0 1 ZBTB40 chr1:22846554 3'AG 22846554 Downstream 63bp
chr5 126732295 126732295 1 + C T SARC 126732294 + 126732274 126732314 41 AAAAATGGGGCTCTGTGCAACCCCATCACCGGGGCTTGCCA AAAAATGGGGCTCTGTGCAACTCCATCACCGGGGCTTGCCA < 41bp 0.520495624979751 0.775848067304162 0.095788 0.9574406 prediction 0.510704884648822 Functional Gain - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126732294 chr5:126732295 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_107303 0 0 0 0 1 MEGF10 chr5:126732224 3'AG 126732224 Downstream 72bp
chr12 124189157 124189157 1 + T C UCEC 124189155 + 124189135 124189175 41 TGCCTGGATATTCCTGCTCACCTGAGCATCCGCATCCTCAT TGCCTGGATATTCCTGCTCACCCGAGCATCCGCATCCTCAT < 41bp 0.547318315770099 0.802647380166668 0.02416411 0.038268536 prediction 0.510658128793139 Functional Gain - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124189155 chr12:124189157 nonsynonymous SNV 0.013 4 23 hm5C_associated_SNPs_107307 0 0 1 0 2 TCTN2 chr12:124189079 3'AG 124189079 Downstream 79bp
chr12 124189157 124189157 1 + T C UCEC 124189155 + 124189135 124189175 41 TGCCTGGATATTCCTGCTCACCTGAGCATCCGCATCCTCAT TGCCTGGATATTCCTGCTCACCCGAGCATCCGCATCCTCAT < 41bp 0.547318315770099 0.802647380166668 0.02416411 0.038268536 prediction 0.510658128793139 Functional Gain - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124189155 chr12:124189157 nonsynonymous SNV 0.013 4 23 hm5C_associated_SNPs_107307 0 0 1 0 2 TCTN2 chr12:124189235 5'GT 124189235 Upstream 79bp
chr6 43146124 43146124 1 + C T SKCM 43146123 + 43146103 43146143 41 CCGCATGCGGTGATGTATGCCCCCACCTCGGGCCTGGGTGA CCGCATGCGGTGATGTATGCCTCCACCTCGGGCCTGGGTGA < 41bp 0.516652024645315 0.771978242262341 0.034556895 0.9116952 prediction 0.510652435234053 Functional Gain - SRF ENSG00000112658 CDS Human protein_coding chr6:43146123 chr6:43146124 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_107308 0 0 1 0 2 SRF chr6:43146032 3'AG 43146032 Downstream 93bp
chr6 43146124 43146124 1 + C T SKCM 43146123 + 43146103 43146143 41 CCGCATGCGGTGATGTATGCCCCCACCTCGGGCCTGGGTGA CCGCATGCGGTGATGTATGCCTCCACCTCGGGCCTGGGTGA < 41bp 0.516652024645315 0.771978242262341 0.034556895 0.9116952 prediction 0.510652435234053 Functional Gain - SRF ENSG00000112658 CDS Human protein_coding chr6:43146123 chr6:43146124 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_107308 0 0 1 0 2 SRF chr6:43146223 5'GT 43146223 Upstream 100bp
chr8 22745201 22745201 1 + C G rs139754395 22745200 + 22745180 22745220 41 AGGCAGGAGGATCGCTTGAGCCCAGGAAGTCGAGGCTGCAG AGGCAGGAGGATCGCTTGAGCGCAGGAAGTCGAGGCTGCAG < 41bp 0.469572178623786 0.755324292483076 0.10048419 0.3390286 prediction 0.510648584966151 Functional Gain - LOC101929237 ENSG00000248738 ncRNA_exonic Human antisense chr8:22745200 chr8:22745201 . . 0 22 hm5C_associated_SNPs_107309 0 0 0 0 1 LOC101929237 chr8:22745189 3'AG 22745189 Downstream 13bp
chr11 285235 285235 1 + T A KIRC 285231 + 285211 285251 41 GGCTGTGAAGAGAGCAAAGCCGGATCTGGTCATCACACACC GGCTGTGAAGAGAGCAAAGCCGGAACTGGTCATCACACACC < 41bp 0.591525523047622 0.846835354363138 0.41184103 0.54172945 prediction 0.510619662631033 Functional Gain - NLRP6 ENSG00000174885 CDS Human protein_coding chr11:285231 chr11:285235 nonsynonymous SNV 0.066 0 25 hm5C_associated_SNPs_107311 0 0 0 0 1 NLRP6 chr11:285166 3'AG 285166 Downstream 70bp
chr15 41794328 41794328 1 + C G rs150465612 41794324 + 41794304 41794344 41 CACGCGCAGCGCGCCGTCACCAAGCCGCGCTACATGCAGTG CACGCGCAGCGCGCCGTCACCAAGGCGCGCTACATGCAGTG < 41bp 0.565052369985338 0.820352541460088 0.8002151 0.8975371 prediction 0.510600342949501 Functional Gain - ITPKA ENSG00000137825 CDS Human protein_coding chr15:41794324 chr15:41794328 nonsynonymous SNV 0.948 3 25 hm5C_associated_SNPs_107312 0 0 1 0 1 ITPKA chr15:41794399 5'GT 41794399 Upstream 72bp
chr16 70500150 70500150 1 + T C UCEC 70500148 + 70500128 70500168 41 CTGGACTGCCTGCTGGACATCATGACCTATCGGGTGAGGCT CTGGACTGCCTGCTGGACATCACGACCTATCGGGTGAGGCT < 41bp 0.49292186951745 0.755288020307424 0.26573566 0.16699451 prediction 0.510576040614849 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70500148 chr16:70500150 nonsynonymous SNV 0.989 2 23 hm5C_associated_SNPs_107315 0 0 1 0 1 FUK chr16:70500160 5'GT 70500160 Upstream 11bp
chr11 66190315 66190315 1 + C A LUAD 66190314 + 66190294 66190334 41 CCTCTGGAGCCGAGACCCCGCCCAGGTCCTGGCCCTGGCCC CCTCTGGAGCCGAGACCCCGCACAGGTCCTGGCCCTGGCCC < 41bp 0.490115867106378 0.755287526049585 0.11617032 0.12076908 prediction 0.51057505209917 Functional Gain - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66190314 chr11:66190315 nonsynonymous SNV 0.992 1 22 hm5C_associated_SNPs_107316 0 0 0 0 1 NPAS4 chr11:66190412 5'GT 66190412 Upstream 98bp
chr9 35751973 35751973 1 + C G rs570413538 35751972 + 35751952 35751992 41 GTTTTCAGTCAGCTTACAGACCGAGGAGCGTGTACAGCCTG GTTTTCAGTCAGCTTACAGACGGAGGAGCGTGTACAGCCTG < 41bp 0.597728595512027 0.852999641343407 0.38589537 0.890422 prediction 0.510542091662761 Functional Gain - RGP1 ENSG00000107185 CDS Human protein_coding chr9:35751972 chr9:35751973 synonymous SNV . 0 22 hm5C_associated_SNPs_107320 0 0 1 0 1 RGP1 chr9:35751953 3'AG 35751953 Downstream 21bp
chr16 67859872 67859872 1 + T C READ 67859870 + 67859850 67859890 41 GTTCGCAAGGAGCATGAGATCCTCATGCAGCTGCACATGAG GTTCGCAAGGAGCATGAGATCCCCATGCAGCTGCACATGAG < 41bp 0.547966705930648 0.803228893952871 0.24935988 0.10442436 prediction 0.510524376044446 Functional Gain - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67859870 chr16:67859872 nonsynonymous SNV 0.410 4 23 hm5C_associated_SNPs_107322 0 0 0 0 1 TSNAXIP1 chr16:67859820 3'AG 67859820 Downstream 53bp
chr15 75189518 75189518 1 + C A UCEC 75189514 + 75189494 75189534 41 TCAGGAAGACCCCTACCTCTCAATCTATGACCCCCCTGTAC TCAGGAAGACCCCTACCTCTCAATATATGACCCCCCTGTAC < 41bp 0.344731966708656 0.755257956889164 0.07722902 0.06444663 prediction 0.510515913778328 Functional Gain - MPI ENSG00000178802 CDS Human protein_coding chr15:75189514 chr15:75189518 synonymous SNV . 0 25 hm5C_associated_SNPs_107323 0 0 1 0 1 MPI chr15:75189560 5'GT 75189560 Upstream 43bp
chr7 99912179 99912179 1 + C A rs185181307 99912178 + 99912158 99912198 41 CTGGGGTAGATCCCAGCCCCCCGCGTAGGTCCCTTGGCTGC CTGGGGTAGATCCCAGCCCCCAGCGTAGGTCCCTTGGCTGC < 41bp 0.502216235556306 0.757465027129709 0.35463488 0.8318658 prediction 0.510497583146806 Functional Gain - SPDYE3 ENSG00000214300 CDS Human protein_coding chr7:99912178 chr7:99912179 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_107324 0 0 0 0 1 SPDYE3 chr7:99912155 3'AG 99912155 Downstream 25bp
chrX 8433568 8433568 1 + C A LUAD 8433567 + 8433547 8433587 41 AGAGGAAGTCCTCCTCTCAGCCGAGCCCCAGTGACCCGAAG AGAGGAAGTCCTCCTCTCAGCAGAGCCCCAGTGACCCGAAG < 41bp 0.498151663793327 0.755231543025704 0.38160944 0.6579149 prediction 0.510463086051408 Functional Gain - VCX3B ENSG00000205642 CDS Human protein_coding chrX:8433567 chrX:8433568 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_107327 0 0 0 0 1 VCX3B chrX:8433593 5'GT 8433593 Upstream 26bp
chr19 17654171 17654171 1 + T G LUSC 17654168 + 17654148 17654188 41 CCTTCCTGCAGCTGGCTGACCAGTGTCTGACGACGGCCCTC CCTTCCTGCAGCTGGCTGACCAGGGTCTGACGACGGCCCTC < 41bp 0.666055667651486 0.921279233915303 0.13879457 0.914866 prediction 0.510447132527634 Functional Gain - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17654168 chr19:17654171 nonsynonymous SNV 0.969 0 24 hm5C_associated_SNPs_107328 0 0 0 0 2 FAM129C chr19:17654126 3'AG 17654126 Downstream 46bp
chr19 17654171 17654171 1 + T G LUSC 17654168 + 17654148 17654188 41 CCTTCCTGCAGCTGGCTGACCAGTGTCTGACGACGGCCCTC CCTTCCTGCAGCTGGCTGACCAGGGTCTGACGACGGCCCTC < 41bp 0.666055667651486 0.921279233915303 0.13879457 0.914866 prediction 0.510447132527634 Functional Gain - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17654168 chr19:17654171 nonsynonymous SNV 0.969 0 24 hm5C_associated_SNPs_107328 0 0 0 0 2 FAM129C chr19:17654242 5'GT 17654242 Upstream 72bp
chr12 120995448 120995448 1 + C T STAD 120995447 + 120995427 120995467 41 GTTGGTGGCTTTGCCCAAATCCAAATGGATGAATGTAGACC GTTGGTGGCTTTGCCCAAATCTAAATGGATGAATGTAGACC < 41bp 0.506982656897715 0.762187946124789 0.22745144 0.19723183 prediction 0.510410578454147 Functional Gain - RNF10 ENSG00000022840 CDS Human protein_coding chr12:120995447 chr12:120995448 synonymous SNV . 0 22 hm5C_associated_SNPs_107330 0 0 1 4 1 RNF10 chr12:120995485 5'GT 120995485 Upstream 38bp
chr15 78730689 78730689 1 + C A LUAD 78730685 + 78730665 78730705 41 ATATGGTCTCCGGCGATGGACGCCCCAAAAGCAGGTCAGTT ATATGGTCTCCGGCGATGGACGCCACAAAAGCAGGTCAGTT < 41bp 0.368545688294632 0.755201210691488 0.22249213 0.14474851 prediction 0.510402421382977 Functional Gain - IREB2 ENSG00000136381 CDS Human protein_coding chr15:78730685 chr15:78730689 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_107331 0 0 1 0 1 IREB2 chr15:78730698 5'GT 78730698 Upstream 10bp
chr11 128782012 128782012 1 + C A rs7102584 128782008 + 128781988 128782028 41 CTGATCATCTCCCATGAGATCAACCAGAAGAGCCCTTTCTG CTGATCATCTCCCATGAGATCAACAAGAAGAGCCCTTTCTG < 41bp 0.331436801804725 0.755186468251914 0.10805863 0.11274254 prediction 0.510372936503828 Functional Gain - KCNJ5 ENSG00000120457 CDS Human protein_coding chr11:128782008 chr11:128782012 nonsynonymous SNV 0.990 2 25 hm5C_associated_SNPs_107334 0 0 0 0 1 KCNJ5 chr11:128782105 5'GT 128782105 Upstream 94bp
chr12 6494204 6494204 1 + T A OV 6494200 + 6494180 6494220 41 CGTTCTAGGCACCTATGTCTCAGCTAAATGTAGCCGCATCC CGTTCTAGGCACCTATGTCTCAGCAAAATGTAGCCGCATCC < 41bp 0.594257151789213 0.849435753062652 0.26614487 0.4125241 prediction 0.510357202546877 Functional Gain - LTBR ENSG00000111321 CDS Human protein_coding chr12:6494200 chr12:6494204 synonymous SNV . 0 25 hm5C_associated_SNPs_107335 0 0 0 0 2 LTBR chr12:6494188 3'AG 6494188 Downstream 17bp
chr12 6494204 6494204 1 + T A OV 6494200 + 6494180 6494220 41 CGTTCTAGGCACCTATGTCTCAGCTAAATGTAGCCGCATCC CGTTCTAGGCACCTATGTCTCAGCAAAATGTAGCCGCATCC < 41bp 0.594257151789213 0.849435753062652 0.26614487 0.4125241 prediction 0.510357202546877 Functional Gain - LTBR ENSG00000111321 CDS Human protein_coding chr12:6494200 chr12:6494204 synonymous SNV . 0 25 hm5C_associated_SNPs_107335 0 0 0 0 2 LTBR chr12:6494203 3'AG 6494203 Downstream 2bp
chr10 12200045 12200045 1 + C G SKCM 12200044 + 12200024 12200064 41 TCCAACCTGTATGTTATTTCCCAGATGCTGTCTGTTCGATT TCCAACCTGTATGTTATTTCCGAGATGCTGTCTGTTCGATT < 41bp 0.597166536485271 0.852345130312461 0.12745413 0.45509568 prediction 0.510357187654381 Functional Gain - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12200044 chr10:12200045 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_107336 0 0 1 1 1 SEC61A2 chr10:12200104 5'GT 12200104 Upstream 60bp
chr15 77324734 77324734 1 + C G rs149195362 77324733 + 77324713 77324753 41 GAGCACGGGCACAGAGCCCCCCGGTGAGGTCCGGCTTGCGG GAGCACGGGCACAGAGCCCCCGGGTGAGGTCCGGCTTGCGG < 41bp 0.597226410037591 0.852382022410975 0.20740786 0.8420017 prediction 0.510311224746768 Functional Gain - PSTPIP1 ENSG00000140368 CDS Human protein_coding chr15:77324733 chr15:77324734 synonymous SNV . 0 22 hm5C_associated_SNPs_107339 1 0 1 0 2 PSTPIP1 chr15:77324735 5'GT 77324735 Upstream 2bp
chr15 77324734 77324734 1 + C G rs149195362 77324733 + 77324713 77324753 41 GAGCACGGGCACAGAGCCCCCCGGTGAGGTCCGGCTTGCGG GAGCACGGGCACAGAGCCCCCGGGTGAGGTCCGGCTTGCGG < 41bp 0.597226410037591 0.852382022410975 0.20740786 0.8420017 prediction 0.510311224746768 Functional Gain - PSTPIP1 ENSG00000140368 CDS Human protein_coding chr15:77324733 chr15:77324734 synonymous SNV . 0 22 hm5C_associated_SNPs_107339 1 0 1 0 2 PSTPIP1 chr15:77324769 5'GT 77324769 Upstream 36bp
chr4 89574052 89574052 1 + C G LUSC 89574048 + 89574028 89574068 41 TTCTTCACCTGGGGAAAGAACAGCCATGGGCAGCTTGGCTT TTCTTCACCTGGGGAAAGAACAGCGATGGGCAGCTTGGCTT < 41bp 0.57871964923469 0.833874911243384 0.48035896 0.8279419 prediction 0.510310524017388 Functional Gain - HERC3 ENSG00000138641 CDS Human protein_coding chr4:89574048 chr4:89574052 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_107340 0 0 1 0 1 HERC3 chr4:89574020 3'AG 89574020 Downstream 33bp
chr17 4645075 4645075 1 + C A BRCA 4645074 + 4645054 4645094 41 GCTCTGGGGATCCCCGAAAGCCCCGACAGCTTACTGTGGGA GCTCTGGGGATCCCCGAAAGCACCGACAGCTTACTGTGGGA < 41bp 0.499998960834341 0.755150014383221 0.069695115 0.06832522 prediction 0.510300028766441 Functional Gain - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4645074 chr17:4645075 nonsynonymous SNV 0.982 4 22 hm5C_associated_SNPs_107342 0 0 0 0 1 ZMYND15 chr17:4645111 5'GT 4645111 Upstream 37bp
chr22 48972368 48972368 1 + C A HNSC 48972364 + 48972344 48972384 41 TTCCTCGTCCTAGTGATCCACGCGCAGTTCCTCAAAGAAGG TTCCTCGTCCTAGTGATCCACGCGAAGTTCCTCAAAGAAGG < 41bp 0.362170097523246 0.755144459278723 0.010497898 0.07836896 prediction 0.510288918557446 Functional Gain - FAM19A5 ENSG00000219438 CDS Human protein_coding chr22:48972364 chr22:48972368 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_107344 0 0 0 0 1 FAM19A5 chr22:48972383 5'GT 48972383 Upstream 16bp
chr1 200877931 200877931 1 + T G BLCA 200877929 + 200877909 200877949 41 GGCCTCTCCCACCCCAAACCCTTGAGGGTCTGCAGCCAACA GGCCTCTCCCACCCCAAACCCTGGAGGGTCTGCAGCCAACA < 41bp 0.628232458230495 0.883368277378392 0.035918683 0.40435866 prediction 0.510271638295793 Functional Gain - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200877929 chr1:200877931 synonymous SNV . 0 23 hm5C_associated_SNPs_107345 0 0 0 0 1 C1orf106 chr1:200877858 3'AG 200877858 Downstream 74bp
chr3 46620747 46620747 1 + T A OV 46620743 + 46620723 46620763 41 GCTGGGCCATCAGGAATTTGCTCGTCCATCTCGGGGATACC GCTGGGCCATCAGGAATTTGCTCGACCATCTCGGGGATACC < 41bp 0.60326719348777 0.85838942673632 0.12287319 0.17323941 prediction 0.5102444664971 Functional Gain - TDGF1 ENSG00000241186 CDS Human protein_coding chr3:46620743 chr3:46620747 synonymous SNV . 0 25 hm5C_associated_SNPs_107348 0 0 0 0 1 TDGF1 chr3:46620722 3'AG 46620722 Downstream 26bp
chr14 65878622 65878622 1 + C A rs569537470 65878618 + 65878598 65878638 41 TGGGGCGGCGCGCTCCGGTCCTCCCGCTCAGCTGGCGGTCT TGGGGCGGCGCGCTCCGGTCCTCCAGCTCAGCTGGCGGTCT < 41bp 0.462195016081723 0.755108396207638 0.13717255 0.89094317 prediction 0.510216792415275 Functional Gain - FUT8-AS1 ENSG00000033170 UTR5 Human protein_coding chr14:65878618 chr14:65878622 . . 0 25 hm5C_associated_SNPs_107352 0 0 0 0 1 FUT8-AS1 chr14:65878711 5'GT 65878711 Upstream 90bp
chr17 19555037 19555037 1 + T C CESC 19555035 + 19555015 19555055 41 AGTGGTGCTGATAATCGGAGCTTGGAATTACCCCTTCGTTC AGTGGTGCTGATAATCGGAGCTCGGAATTACCCCTTCGTTC < 41bp 0.502283545491548 0.757389862987359 0.10156658 0.15682161 prediction 0.510212634991622 Functional Gain - ALDH3A2 ENSG00000072210 CDS Human protein_coding chr17:19555035 chr17:19555037 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_107353 0 0 1 0 1 ALDH3A2 chr17:19555091 5'GT 19555091 Upstream 55bp
chr2 97019092 97019092 1 + C G BRCA 97019088 + 97019068 97019108 41 ATCGCCAGATCTGCCCTTCCCTGGCCGGGTTCCAGTTTACA ATCGCCAGATCTGCCCTTCCCTGGGCGGGTTCCAGTTTACA < 41bp 0.453841436781646 0.75508513879145 0.1091916 0.20397148 prediction 0.510170277582901 Functional Gain - NCAPH ENSG00000121152 CDS Human protein_coding chr2:97019088 chr2:97019092 nonsynonymous SNV 0.993 3 25 hm5C_associated_SNPs_107355 0 0 1 0 2 NCAPH chr2:97019044 3'AG 97019044 Downstream 49bp
chr2 97019092 97019092 1 + C G BRCA 97019088 + 97019068 97019108 41 ATCGCCAGATCTGCCCTTCCCTGGCCGGGTTCCAGTTTACA ATCGCCAGATCTGCCCTTCCCTGGGCGGGTTCCAGTTTACA < 41bp 0.453841436781646 0.75508513879145 0.1091916 0.20397148 prediction 0.510170277582901 Functional Gain - NCAPH ENSG00000121152 CDS Human protein_coding chr2:97019088 chr2:97019092 nonsynonymous SNV 0.993 3 25 hm5C_associated_SNPs_107355 0 0 1 0 2 NCAPH chr2:97019135 5'GT 97019135 Upstream 44bp
chr2 16080806 16080806 1 + C G rs188129461 16080805 + 16080785 16080825 41 TCCGAGGACACCCCCGCCCCCCCGGCCCACCCGGAGACACC TCCGAGGACACCCCCGCCCCCGCGGCCCACCCGGAGACACC < 41bp 0.477203368556263 0.755068812666086 0.0769864 0.23820275 prediction 0.510137625332173 Functional Gain - MYCN ENSG00000233718 ncRNA_intronic Human protein_coding chr2:16080805 chr2:16080806 . . 0 22 hm5C_associated_SNPs_107358 0 0 0 0 1 MYCN chr2:16080865 5'GT 16080865 Upstream 60bp
chr5 82373399 82373399 1 + C A rs28383113 82373395 + 82373375 82373415 41 AAAACCTTGATCTGTGAAAGCGGGCGTTTTGGAAGATACCG AAAACCTTGATCTGTGAAAGCGGGAGTTTTGGAAGATACCG < 41bp 0.60678218864849 0.861848029839871 0.89162946 0.89442736 prediction 0.510131682382762 Functional Gain - XRCC4 ENSG00000152422 UTR5 Human protein_coding chr5:82373395 chr5:82373399 . . 0 25 hm5C_associated_SNPs_107360 0 0 1 0 2 XRCC4 chr5:82373434 5'GT 82373434 Upstream 36bp
chr5 82373399 82373399 1 + C A rs28383113 82373395 + 82373375 82373415 41 AAAACCTTGATCTGTGAAAGCGGGCGTTTTGGAAGATACCG AAAACCTTGATCTGTGAAAGCGGGAGTTTTGGAAGATACCG < 41bp 0.60678218864849 0.861848029839871 0.89162946 0.89442736 prediction 0.510131682382762 Functional Gain - XRCC4 ENSG00000152422 UTR5 Human protein_coding chr5:82373395 chr5:82373399 . . 0 25 hm5C_associated_SNPs_107360 0 0 1 0 2 XRCC4 chr5:82373481 5'GT 82373481 Upstream 83bp
chr11 3405445 3405445 1 + C A LUAD 3405444 + 3405424 3405464 41 CTACAGTTCCTGTCCCATGACCAGGGCCAGATCACCAAGGA CTACAGTTCCTGTCCCATGACAAGGGCCAGATCACCAAGGA < 41bp 0.509587899991754 0.764651051482822 0.55319065 0.2990973 prediction 0.510126302982135 Functional Gain - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3405444 chr11:3405445 . . 0 22 hm5C_associated_SNPs_107361 0 0 1 2 2 TSSC2 chr11:3405397 3'AG 3405397 Downstream 49bp
chr11 3405445 3405445 1 + C A LUAD 3405444 + 3405424 3405464 41 CTACAGTTCCTGTCCCATGACCAGGGCCAGATCACCAAGGA CTACAGTTCCTGTCCCATGACAAGGGCCAGATCACCAAGGA < 41bp 0.509587899991754 0.764651051482822 0.55319065 0.2990973 prediction 0.510126302982135 Functional Gain - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3405444 chr11:3405445 . . 0 22 hm5C_associated_SNPs_107361 0 0 1 2 2 TSSC2 chr11:3405514 5'GT 3405514 Upstream 70bp
chr12 57969038 57969038 1 + C G HNSC 57969034 + 57969014 57969054 41 ACCGGGCGGGAGCTCTCATCCTGCCAGCTCCTCATCTCTCA ACCGGGCGGGAGCTCTCATCCTGCGAGCTCCTCATCTCTCA < 41bp 0.580879905267769 0.835896441021221 0.17364919 0.37133798 prediction 0.510033071506905 Functional Gain - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57969034 chr12:57969038 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_107363 0 0 1 0 1 KIF5A chr12:57969055 5'GT 57969055 Upstream 18bp
chr17 41571178 41571178 1 + C T SKCM 41571177 + 41571157 41571197 41 ACTTGTCCCTTGTCAGTGCTCCTGAAGTAGAGGACGACTCA ACTTGTCCCTTGTCAGTGCTCTTGAAGTAGAGGACGACTCA < 41bp 0.507218873145082 0.762214111062253 0.07857719 0.084349364 prediction 0.509990475834341 Functional Gain - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41571177 chr17:41571178 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_107366 0 0 1 0 1 DHX8 chr17:41571254 5'GT 41571254 Upstream 77bp
chr19 35831819 35831819 1 + C T UCEC 35831818 + 35831798 35831838 41 GTGACCACAGTGATTCAAAACCCCATGCCGATTCGAGAAGG GTGACCACAGTGATTCAAAACTCCATGCCGATTCGAGAAGG < 41bp 0.520051092053961 0.775032628548749 0.08041206 0.9548533 prediction 0.509963072989576 Functional Gain - CD22 ENSG00000012124 CDS Human protein_coding chr19:35831818 chr19:35831819 nonsynonymous SNV 0.022 0 22 hm5C_associated_SNPs_107370 0 0 0 0 1 CD22 chr19:35831784 3'AG 35831784 Downstream 36bp
chr3 47448093 47448093 1 + C G HNSC 47448089 + 47448069 47448109 41 GATGAAGATCTACTACTTCGCAGCCGTGGCTCATGTGAGGG GATGAAGATCTACTACTTCGCAGCGGTGGCTCATGTGAGGG < 41bp 0.461861086917888 0.754976482987087 0.30999976 0.8515073 prediction 0.509952965974174 Functional Gain - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47448089 chr3:47448093 synonymous SNV . 0 25 hm5C_associated_SNPs_107372 0 0 1 0 1 PTPN23 chr3:47448102 5'GT 47448102 Upstream 10bp
chr2 71187158 71187158 1 + C A STAD 71187157 + 71187137 71187177 41 GACGTCATGAACAGCATTGCCCGCGGCCAGAAGATCCCCAT GACGTCATGAACAGCATTGCCAGCGGCCAGAAGATCCCCAT < 41bp 0.51998370756441 0.774952075481217 0.28306034 0.88050663 prediction 0.509936735833614 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71187157 chr2:71187158 nonsynonymous SNV 0.693 4 22 hm5C_associated_SNPs_107373 0 0 0 0 2 ATP6V1B1 chr2:71187069 3'AG 71187069 Downstream 90bp
chr2 71187158 71187158 1 + C A STAD 71187157 + 71187137 71187177 41 GACGTCATGAACAGCATTGCCCGCGGCCAGAAGATCCCCAT GACGTCATGAACAGCATTGCCAGCGGCCAGAAGATCCCCAT < 41bp 0.51998370756441 0.774952075481217 0.28306034 0.88050663 prediction 0.509936735833614 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71187157 chr2:71187158 nonsynonymous SNV 0.693 4 22 hm5C_associated_SNPs_107373 0 0 0 0 2 ATP6V1B1 chr2:71187208 5'GT 71187208 Upstream 51bp
chr17 6930071 6930071 1 + C G PRAD 6930067 + 6930047 6930087 41 ATCTGCGGAGCCCGTTTTAACCGGCCAGCAAACCTGAAAAC ATCTGCGGAGCCCGTTTTAACCGGGCAGCAAACCTGAAAAC < 41bp 0.561910209986489 0.816875674444731 0.50239027 0.93710876 prediction 0.509930928916484 Functional Gain - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6930067 chr17:6930071 nonsynonymous SNV 0.985 1 25 hm5C_associated_SNPs_107375 0 0 0 0 2 BCL6B chr17:6930024 3'AG 6930024 Downstream 48bp
chr17 6930071 6930071 1 + C G PRAD 6930067 + 6930047 6930087 41 ATCTGCGGAGCCCGTTTTAACCGGCCAGCAAACCTGAAAAC ATCTGCGGAGCCCGTTTTAACCGGGCAGCAAACCTGAAAAC < 41bp 0.561910209986489 0.816875674444731 0.50239027 0.93710876 prediction 0.509930928916484 Functional Gain - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6930067 chr17:6930071 nonsynonymous SNV 0.985 1 25 hm5C_associated_SNPs_107375 0 0 0 0 2 BCL6B chr17:6930154 5'GT 6930154 Upstream 84bp
chr8 76471075 76471075 1 + T C DLBC 76471073 + 76471053 76471093 41 GATCCAGTAAAAATTAAGAACATGAGGTTCCAAGTGCAGAT GATCCAGTAAAAATTAAGAACACGAGGTTCCAAGTGCAGAT < 41bp 0.471611148109146 0.754917661601028 0.1603097 0.12223542 prediction 0.509835323202056 Functional Gain - HNF4G ENSG00000164749 CDS Human protein_coding chr8:76471073 chr8:76471075 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_107380 0 0 0 0 1 HNF4G chr8:76471036 3'AG 76471036 Downstream 40bp
chr16 30980721 30980721 1 + C T LUSC 30980720 + 30980700 30980740 41 GGCAAGACCCAGGGCAAGCACCGCAAGTCCTTTGCTCTGGA GGCAAGACCCAGGGCAAGCACTGCAAGTCCTTTGCTCTGGA < 41bp 0.523360101033975 0.778253673710311 0.30311337 0.2631122 prediction 0.509787145352672 Functional Gain - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30980720 chr16:30980721 nonsynonymous SNV 0.987 3 22 hm5C_associated_SNPs_107382 0 0 1 0 2 SETD1A chr16:30980626 3'AG 30980626 Downstream 96bp
chr16 30980721 30980721 1 + C T LUSC 30980720 + 30980700 30980740 41 GGCAAGACCCAGGGCAAGCACCGCAAGTCCTTTGCTCTGGA GGCAAGACCCAGGGCAAGCACTGCAAGTCCTTTGCTCTGGA < 41bp 0.523360101033975 0.778253673710311 0.30311337 0.2631122 prediction 0.509787145352672 Functional Gain - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30980720 chr16:30980721 nonsynonymous SNV 0.987 3 22 hm5C_associated_SNPs_107382 0 0 1 0 2 SETD1A chr16:30980783 5'GT 30980783 Upstream 63bp
chr16 23366760 23366760 1 + C G UCS 23366756 + 23366736 23366776 41 GCTAGTAGAGATGAGCTACCCCGGCGAGCAGATGATCCTGG GCTAGTAGAGATGAGCTACCCCGGGGAGCAGATGATCCTGG < 41bp 0.57171352656199 0.826602556250287 0.92153734 0.920593 prediction 0.509778059376595 Functional Gain - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23366756 chr16:23366760 synonymous SNV . 0 25 hm5C_associated_SNPs_107383 0 0 0 0 1 SCNN1B chr16:23366810 5'GT 23366810 Upstream 51bp
chr3 93761945 93761945 1 + T C COAD 93761943 + 93761923 93761963 41 ACCTGAAACATAAAATGGAGCATGAGCAAATAGAGACACAA ACCTGAAACATAAAATGGAGCACGAGCAAATAGAGACACAA < 41bp 0.517051711847122 0.771930268699474 0.07766563 0.09297764 prediction 0.509757113704704 Functional Gain - ARL13B ENSG00000169379 CDS Human protein_coding chr3:93761943 chr3:93761945 synonymous SNV . 0 23 hm5C_associated_SNPs_107384 0 0 0 0 1 ARL13B chr3:93761859 3'AG 93761859 Downstream 87bp
chr1 15702189 15702189 1 + C G rs140832655 15702188 + 15702168 15702208 41 AAATACTACTGGATGCAAAACCGGATTTGCCAACTCTCTCA AAATACTACTGGATGCAAAACGGGATTTGCCAACTCTCTCA < 41bp 0.462276712896563 0.75487573695709 0.5826057 0.8215531 prediction 0.509751473914181 Functional Gain - FHAD1 ENSG00000142621 CDS Human protein_coding chr1:15702188 chr1:15702189 nonsynonymous SNV 0.965 3 22 hm5C_associated_SNPs_107385 0 0 0 0 2 FHAD1 chr1:15702099 3'AG 15702099 Downstream 91bp
chr1 15702189 15702189 1 + C G rs140832655 15702188 + 15702168 15702208 41 AAATACTACTGGATGCAAAACCGGATTTGCCAACTCTCTCA AAATACTACTGGATGCAAAACGGGATTTGCCAACTCTCTCA < 41bp 0.462276712896563 0.75487573695709 0.5826057 0.8215531 prediction 0.509751473914181 Functional Gain - FHAD1 ENSG00000142621 CDS Human protein_coding chr1:15702188 chr1:15702189 nonsynonymous SNV 0.965 3 22 hm5C_associated_SNPs_107385 0 0 0 0 2 FHAD1 chr1:15702226 5'GT 15702226 Upstream 38bp
chr2 216176824 216176824 1 + C G rs28366035 216176823 + 216176803 216176843 41 TACCTGCGCACGTGGTGCCGCCGCTGCTGCCTCCCGCTCGC TACCTGCGCACGTGGTGCCGCGGCTGCTGCCTCCCGCTCGC < 41bp 0.456731105040543 0.754863401147868 0.5386634 0.871122 prediction 0.509726802295735 Functional Gain - ATIC ENSG00000138363 UTR5 Human protein_coding chr2:216176823 chr2:216176824 . . 0 22 hm5C_associated_SNPs_107389 0 0 1 0 1 ATIC chr2:216176884 5'GT 216176884 Upstream 61bp
chr11 119059235 119059235 1 + C A UCEC 119059234 + 119059214 119059254 41 TCTCCCTCACTGTCGTCGACCCTGAGGCGGACCGCTTCTTC TCTCCCTCACTGTCGTCGACCATGAGGCGGACCGCTTCTTC < 41bp 0.495783253182739 0.754848231194799 0.043614745 0.06922519 prediction 0.509696462389598 Functional Gain - PDZD3 ENSG00000172367 CDS Human protein_coding chr11:119059234 chr11:119059235 nonsynonymous SNV 0.478 3 22 hm5C_associated_SNPs_107391 0 0 0 0 1 PDZD3 chr11:119059260 5'GT 119059260 Upstream 26bp
chr19 44531259 44531259 1 + C G SKCM 44531258 + 44531238 44531278 41 CCTGCCCAGAGGAAGCTGTACCGAGATGTGATGCTTGAGAA CCTGCCCAGAGGAAGCTGTACGGAGATGTGATGCTTGAGAA < 41bp 0.56142238329387 0.816263152288221 0.18437004 0.8915193 prediction 0.509681537988703 Functional Gain - ZNF222 ENSG00000159885;ENSG00000267022 CDS Human other chr19:44531258 chr19:44531259 nonsynonymous SNV 0.927 2 22 hm5C_associated_SNPs_107394 0 0 0 0 2 ZNF222 chr19:44531175 3'AG 44531175 Downstream 85bp
chr19 44531259 44531259 1 + C G SKCM 44531258 + 44531238 44531278 41 CCTGCCCAGAGGAAGCTGTACCGAGATGTGATGCTTGAGAA CCTGCCCAGAGGAAGCTGTACGGAGATGTGATGCTTGAGAA < 41bp 0.56142238329387 0.816263152288221 0.18437004 0.8915193 prediction 0.509681537988703 Functional Gain - ZNF222 ENSG00000159885;ENSG00000267022 CDS Human other chr19:44531258 chr19:44531259 nonsynonymous SNV 0.927 2 22 hm5C_associated_SNPs_107394 0 0 0 0 2 ZNF222 chr19:44531301 5'GT 44531301 Upstream 43bp
chr8 24321436 24321436 1 + T C UCEC 24321434 + 24321414 24321454 41 TACAGTGAAACATTCTACTCCATGAAAGGAGAAGCGTTCAC TACAGTGAAACATTCTACTCCACGAAAGGAGAAGCGTTCAC < 41bp 0.482356002098061 0.754832121496153 0.011183262 0.020350724 prediction 0.509664242992305 Functional Gain - ADAM7 ENSG00000069206 CDS Human protein_coding chr8:24321434 chr8:24321436 nonsynonymous SNV 0.032 0 23 hm5C_associated_SNPs_107397 0 0 0 0 2 ADAM7 chr8:24321395 3'AG 24321395 Downstream 42bp
chr8 24321436 24321436 1 + T C UCEC 24321434 + 24321414 24321454 41 TACAGTGAAACATTCTACTCCATGAAAGGAGAAGCGTTCAC TACAGTGAAACATTCTACTCCACGAAAGGAGAAGCGTTCAC < 41bp 0.482356002098061 0.754832121496153 0.011183262 0.020350724 prediction 0.509664242992305 Functional Gain - ADAM7 ENSG00000069206 CDS Human protein_coding chr8:24321434 chr8:24321436 nonsynonymous SNV 0.032 0 23 hm5C_associated_SNPs_107397 0 0 0 0 2 ADAM7 chr8:24321473 5'GT 24321473 Upstream 38bp
chr11 77919935 77919935 1 + C T UCEC 77919934 + 77919914 77919954 41 TTCCCCAGAGAACTTCCTCTCCGCATCCTGGACGCCCTGGT TTCCCCAGAGAACTTCCTCTCTGCATCCTGGACGCCCTGGT < 41bp 0.510979825890568 0.765806508845815 0.44339073 0.3354459 prediction 0.509653365910493 Functional Gain - USP35 ENSG00000118369 CDS Human protein_coding chr11:77919934 chr11:77919935 synonymous SNV . 0 22 hm5C_associated_SNPs_107399 0 0 0 0 2 USP35 chr11:77919903 3'AG 77919903 Downstream 33bp
chr11 77919935 77919935 1 + C T UCEC 77919934 + 77919914 77919954 41 TTCCCCAGAGAACTTCCTCTCCGCATCCTGGACGCCCTGGT TTCCCCAGAGAACTTCCTCTCTGCATCCTGGACGCCCTGGT < 41bp 0.510979825890568 0.765806508845815 0.44339073 0.3354459 prediction 0.509653365910493 Functional Gain - USP35 ENSG00000118369 CDS Human protein_coding chr11:77919934 chr11:77919935 synonymous SNV . 0 22 hm5C_associated_SNPs_107399 0 0 0 0 2 USP35 chr11:77920009 5'GT 77920009 Upstream 75bp
chr5 54720592 54720592 1 + T G COAD 54720589 + 54720569 54720609 41 ATATTGTGTTTGCTGCCAGCCTCTACTTGTAGAGTCAGCTA ATATTGTGTTTGCTGCCAGCCTCGACTTGTAGAGTCAGCTA < 41bp 0.399523460617832 0.754826131179285 0.26344025 0.1773333 prediction 0.509652262358569 Functional Gain - SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54720589 chr5:54720592 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_107400 0 0 1 0 1 SKIV2L2 chr5:54720548 3'AG 54720548 Downstream 45bp
chr7 48080992 48080992 1 + C T BRCA 48080991 + 48080971 48081011 41 CGTGGATGCCCCACCAGCGTCCCAGATCCCAGGTCTCAGCA CGTGGATGCCCCACCAGCGTCTCAGATCCCAGGTCTCAGCA < 41bp 0.500413542022522 0.755234023953261 0.41982976 0.3119061 prediction 0.509640963861479 Functional Gain - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48080991 chr7:48080992 synonymous SNV . 0 22 hm5C_associated_SNPs_107401 0 0 0 0 1 C7orf57 chr7:48080931 3'AG 48080931 Downstream 62bp
chr7 94038704 94038704 1 + C G HNSC 94038703 + 94038683 94038723 41 CCCGTGGTGAAGTGGGTCTTCCAGGCCTCTCCGGCCCCGTT CCCGTGGTGAAGTGGGTCTTCGAGGCCTCTCCGGCCCCGTT < 41bp 0.445925665787714 0.754810038463793 0.91111135 0.9340135 prediction 0.509620076927586 Functional Gain - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94038703 chr7:94038704 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_107403 0 0 0 0 1 COL1A2 chr7:94038732 5'GT 94038732 Upstream 29bp
chr13 46092966 46092966 1 + T C SKCM 46092964 + 46092944 46092984 41 AGGCTGAATAGCAACAATGCCTTGATAGAGTTCTTGTTGGA AGGCTGAATAGCAACAATGCCTCGATAGAGTTCTTGTTGGA < 41bp 0.583746465233759 0.838526071032536 0.103628516 0.8298319 prediction 0.509559211597555 Functional Gain - COG3 ENSG00000136152 CDS Human protein_coding chr13:46092964 chr13:46092966 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_107406 0 0 1 0 2 COG3 chr13:46092897 3'AG 46092897 Downstream 70bp
chr13 46092966 46092966 1 + T C SKCM 46092964 + 46092944 46092984 41 AGGCTGAATAGCAACAATGCCTTGATAGAGTTCTTGTTGGA AGGCTGAATAGCAACAATGCCTCGATAGAGTTCTTGTTGGA < 41bp 0.583746465233759 0.838526071032536 0.103628516 0.8298319 prediction 0.509559211597555 Functional Gain - COG3 ENSG00000136152 CDS Human protein_coding chr13:46092964 chr13:46092966 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_107406 0 0 1 0 2 COG3 chr13:46092985 5'GT 46092985 Upstream 20bp
chr4 41258978 41258978 1 + C A rs9321 41258974 + 41258954 41258994 41 TCGTCTTCCCTAGGCTATTTCTGCCGGGCGCTCCGCGAAGA TCGTCTTCCCTAGGCTATTTCTGCAGGGCGCTCCGCGAAGA < 41bp 0.65003029139548 0.90479987817315 0.14496532 0.18754143 prediction 0.509539173555339 Functional Gain - UCHL1 ENSG00000154277 UTR5 Human protein_coding chr4:41258974 chr4:41258978 . . 0 25 hm5C_associated_SNPs_107407 0 0 1 0 1 UCHL1 chr4:41259026 5'GT 41259026 Upstream 49bp
chr11 1857200 1857200 1 + T A rs34141314 1857196 + 1857176 1857216 41 CTGCAGCTCTCCCTGGAGTTCGACTTTGGAAGCCAGGAGGT CTGCAGCTCTCCCTGGAGTTCGACATTGGAAGCCAGGAGGT < 41bp 0.60169583495109 0.856443741390945 0.31809703 0.55405354 prediction 0.509495812879711 Functional Gain - SYT8 ENSG00000149043 CDS Human protein_coding chr11:1857196 chr11:1857200 nonsynonymous SNV 0.674 2 25 hm5C_associated_SNPs_107412 0 0 0 0 2 SYT8 chr11:1857116 3'AG 1857116 Downstream 85bp
chr11 1857200 1857200 1 + T A rs34141314 1857196 + 1857176 1857216 41 CTGCAGCTCTCCCTGGAGTTCGACTTTGGAAGCCAGGAGGT CTGCAGCTCTCCCTGGAGTTCGACATTGGAAGCCAGGAGGT < 41bp 0.60169583495109 0.856443741390945 0.31809703 0.55405354 prediction 0.509495812879711 Functional Gain - SYT8 ENSG00000149043 CDS Human protein_coding chr11:1857196 chr11:1857200 nonsynonymous SNV 0.674 2 25 hm5C_associated_SNPs_107412 0 0 0 0 2 SYT8 chr11:1857214 5'GT 1857214 Upstream 15bp
chr20 3782684 3782684 1 + C G rs61746575 3782680 + 3782660 3782700 41 GCGGCCCCAGGACAGGGACACGCCCGTGCAGAATAAGCGGA GCGGCCCCAGGACAGGGACACGCCGGTGCAGAATAAGCGGA < 41bp 0.475493358412616 0.754715304291525 0.1394172 0.2770778 prediction 0.50943060858305 Functional Gain - CDC25B ENSG00000101224 CDS Human protein_coding chr20:3782680 chr20:3782684 synonymous SNV . 0 25 hm5C_associated_SNPs_107421 0 0 1 0 1 CDC25B chr20:3782747 5'GT 3782747 Upstream 64bp
chr18 59221438 59221438 1 + T A LUSC 59221434 + 59221414 59221454 41 TCCTGGCAGTGCTGGTGTTGCTCATTTTGTCCATGAGGCGG TCCTGGCAGTGCTGGTGTTGCTCAATTTGTCCATGAGGCGG < 41bp 0.420849903931075 0.754710202245678 0.034295827 0.040878654 prediction 0.509420404491356 Functional Gain - CDH20 ENSG00000101542 CDS Human protein_coding chr18:59221434 chr18:59221438 nonsynonymous SNV 0.961 2 25 hm5C_associated_SNPs_107422 0 0 0 0 1 CDH20 chr18:59221423 3'AG 59221423 Downstream 16bp
chr19 50209265 50209265 1 + C A HNSC 50209264 + 50209244 50209284 41 CCCGAAACAGCCTGCTTTCCCCGAGAGCCCTGGAGCAGCAG CCCGAAACAGCCTGCTTTCCCAGAGAGCCCTGGAGCAGCAG < 41bp 0.50694525979855 0.761647182498713 0.4977774 0.8791065 prediction 0.509403845400326 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50209264 chr19:50209265 nonsynonymous SNV 0.990 5 22 hm5C_associated_SNPs_107423 0 0 0 0 1 CPT1C chr19:50209361 5'GT 50209361 Upstream 97bp
chr2 95539334 95539334 1 + C A UCEC 95539333 + 95539313 95539353 41 ATGCAAGCAGTGAGCCAGATCCGGTGGGTAGAGGGCTGCCC ATGCAAGCAGTGAGCCAGATCAGGTGGGTAGAGGGCTGCCC < 41bp 0.517504803473073 0.772203840233949 0.79396534 0.856541 prediction 0.509398073521752 Functional Gain - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95539333 chr2:95539334 synonymous SNV . 0 22 hm5C_associated_SNPs_107424 0 0 0 0 2 TEKT4 chr2:95539265 3'AG 95539265 Downstream 70bp
chr2 95539334 95539334 1 + C A UCEC 95539333 + 95539313 95539353 41 ATGCAAGCAGTGAGCCAGATCCGGTGGGTAGAGGGCTGCCC ATGCAAGCAGTGAGCCAGATCAGGTGGGTAGAGGGCTGCCC < 41bp 0.517504803473073 0.772203840233949 0.79396534 0.856541 prediction 0.509398073521752 Functional Gain - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95539333 chr2:95539334 synonymous SNV . 0 22 hm5C_associated_SNPs_107424 0 0 0 0 2 TEKT4 chr2:95539335 5'GT 95539335 Upstream 2bp
chr19 55889085 55889085 1 + C G STAD 55889081 + 55889061 55889101 41 GGTCTGCTACCACCAGCGTCCAGACGGTGAGGGCTCCTGGC GGTCTGCTACCACCAGCGTCCAGAGGGTGAGGGCTCCTGGC < 41bp 0.558172945349272 0.812871695522555 0.8901632 0.9080601 prediction 0.509397500346567 Functional Gain - TMEM190 ENSG00000160472 CDS Human protein_coding chr19:55889081 chr19:55889085 nonsynonymous SNV 0.554 4 25 hm5C_associated_SNPs_107425 0 0 0 0 1 TMEM190 chr19:55889086 5'GT 55889086 Upstream 2bp
chr19 3282169 3282169 1 + C G CESC 3282168 + 3282148 3282188 41 CTGTCCACCTCGGGCAGCTACCTGAGTCCCGGCGTGGCCTT CTGTCCACCTCGGGCAGCTACGTGAGTCCCGGCGTGGCCTT < 41bp 0.609012378765141 0.86371014894758 0.8600656 0.70618844 prediction 0.509395540364877 Functional Gain - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3282168 chr19:3282169 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_107426 0 0 0 0 2 CELF5 chr19:3282124 3'AG 3282124 Downstream 46bp
chr19 3282169 3282169 1 + C G CESC 3282168 + 3282148 3282188 41 CTGTCCACCTCGGGCAGCTACCTGAGTCCCGGCGTGGCCTT CTGTCCACCTCGGGCAGCTACGTGAGTCCCGGCGTGGCCTT < 41bp 0.609012378765141 0.86371014894758 0.8600656 0.70618844 prediction 0.509395540364877 Functional Gain - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3282168 chr19:3282169 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_107426 0 0 0 0 2 CELF5 chr19:3282265 5'GT 3282265 Upstream 97bp
chr3 9691417 9691417 1 + C A HNSC 9691413 + 9691393 9691433 41 GGCCAAGGATGGCAGCGGGACCGGCGGCTCTAAGGTGAGAT GGCCAAGGATGGCAGCGGGACCGGAGGCTCTAAGGTGAGAT < 41bp 0.369283802393154 0.754694964769606 0.76269627 0.8627933 prediction 0.509389929539211 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9691413 chr3:9691417 synonymous SNV . 0 25 hm5C_associated_SNPs_107428 0 0 1 0 1 MTMR14 chr3:9691426 5'GT 9691426 Upstream 10bp
chr15 23261859 23261859 1 + C A LUAD 23261855 + 23261835 23261875 41 AGAGAGTGGCAGGAGCGCTCCAGGCCCAGGTCAAAAACAAT AGAGAGTGGCAGGAGCGCTCCAGGACCAGGTCAAAAACAAT < 41bp 0.337765429453182 0.754691013226396 0.15828988 0.18008986 prediction 0.509382026452793 Functional Gain - GOLGA8IP ENSG00000153666 CDS Human other chr15:23261855 chr15:23261859 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_107429 0 0 0 0 1 GOLGA8IP chr15:23261763 3'AG 23261763 Downstream 97bp
chr5 156712439 156712439 1 + C T LUSC 156712438 + 156712418 156712458 41 TGCTTGAAGAGCTTCCCCTCCCCGACCAGCAGCCATGCATC TGCTTGAAGAGCTTCCCCTCCTCGACCAGCAGCCATGCATC < 41bp 0.532807160807937 0.787495939806175 0.38641226 0.80316794 prediction 0.509377557996475 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156712438 chr5:156712439 nonsynonymous SNV 0.940 3 22 hm5C_associated_SNPs_107430 0 0 1 0 2 CYFIP2 chr5:156712349 3'AG 156712349 Downstream 91bp
chr5 156712439 156712439 1 + C T LUSC 156712438 + 156712418 156712458 41 TGCTTGAAGAGCTTCCCCTCCCCGACCAGCAGCCATGCATC TGCTTGAAGAGCTTCCCCTCCTCGACCAGCAGCCATGCATC < 41bp 0.532807160807937 0.787495939806175 0.38641226 0.80316794 prediction 0.509377557996475 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156712438 chr5:156712439 nonsynonymous SNV 0.940 3 22 hm5C_associated_SNPs_107430 0 0 1 0 2 CYFIP2 chr5:156712488 5'GT 156712488 Upstream 50bp
chr19 42222061 42222061 1 + C A SKCM 42222057 + 42222037 42222077 41 TTTGCTCCAGATGGCCCAGACGACCCCACCATTTCCCCCTC TTTGCTCCAGATGGCCCAGACGACACCACCATTTCCCCCTC < 41bp 0.340738057677579 0.754661122203696 0.03518024 0.058685154 prediction 0.509322244407393 Functional Gain - CEACAM5 ENSG00000105388 CDS Human protein_coding chr19:42222057 chr19:42222061 nonsynonymous SNV 0.005 4 25 hm5C_associated_SNPs_107433 0 0 0 0 1 CEACAM5 chr19:42222047 3'AG 42222047 Downstream 15bp
chr2 3660939 3660939 1 + C A rs148207876 3660935 + 3660915 3660955 41 AAGGGAGACAAAGGCGCCCCCGGACGGCCTGGAAGAGTCGG AAGGGAGACAAAGGCGCCCCCGGAAGGCCTGGAAGAGTCGG < 41bp 0.449519939474661 0.754652645381358 0.4330658 0.8446126 prediction 0.509305290762715 Functional Gain - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3660935 chr2:3660939 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_107435 0 0 0 0 2 COLEC11 chr2:3660901 3'AG 3660901 Downstream 39bp
chr2 3660939 3660939 1 + C A rs148207876 3660935 + 3660915 3660955 41 AAGGGAGACAAAGGCGCCCCCGGACGGCCTGGAAGAGTCGG AAGGGAGACAAAGGCGCCCCCGGAAGGCCTGGAAGAGTCGG < 41bp 0.449519939474661 0.754652645381358 0.4330658 0.8446126 prediction 0.509305290762715 Functional Gain - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3660935 chr2:3660939 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_107435 0 0 0 0 2 COLEC11 chr2:3660972 5'GT 3660972 Upstream 34bp
chr21 35247781 35247781 1 + C A STAD 35247777 + 35247757 35247797 41 CGGGAGAAGGAGAACTCTGACCGGCTGGAGTGGATCCAGGC CGGGAGAAGGAGAACTCTGACCGGATGGAGTGGATCCAGGC < 41bp 0.418010413271854 0.754646532830163 0.5461784 0.83766854 prediction 0.509293065660325 Functional Gain - ITSN1 ENSG00000205726 CDS Human protein_coding chr21:35247777 chr21:35247781 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_107437 0 0 0 0 1 ITSN1 chr21:35247825 5'GT 35247825 Upstream 45bp
chr3 193355797 193355797 1 + C G KIRC 193355796 + 193355776 193355816 41 TAGTGTGTTGGAAATGATTGCCCAAGCTCGAATATTCCCAA TAGTGTGTTGGAAATGATTGCGCAAGCTCGAATATTCCCAA < 41bp 0.458927972658608 0.754639134681976 0.15572083 0.21115103 prediction 0.509278269363952 Functional Gain - OPA1 ENSG00000198836 CDS Human protein_coding chr3:193355796 chr3:193355797 synonymous SNV . 0 22 hm5C_associated_SNPs_107439 0 0 1 0 2 OPA1 chr3:193355741 3'AG 193355741 Downstream 57bp
chr3 193355797 193355797 1 + C G KIRC 193355796 + 193355776 193355816 41 TAGTGTGTTGGAAATGATTGCCCAAGCTCGAATATTCCCAA TAGTGTGTTGGAAATGATTGCGCAAGCTCGAATATTCCCAA < 41bp 0.458927972658608 0.754639134681976 0.15572083 0.21115103 prediction 0.509278269363952 Functional Gain - OPA1 ENSG00000198836 CDS Human protein_coding chr3:193355796 chr3:193355797 synonymous SNV . 0 22 hm5C_associated_SNPs_107439 0 0 1 0 2 OPA1 chr3:193355854 5'GT 193355854 Upstream 58bp
chr5 167835539 167835539 1 + C T rs17551608 167835538 + 167835518 167835558 41 GCCATGTTGAAGGACGGCTTCCGCACTGACAGGGGGTCTCA GCCATGTTGAAGGACGGCTTCTGCACTGACAGGGGGTCTCA < 41bp 0.492919168699857 0.754633720478223 0.4052502 0.560098 prediction 0.509267440956446 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167835538 chr5:167835539 nonsynonymous SNV 0.821 1 22 hm5C_associated_SNPs_107440 0 0 0 0 1 WWC1 chr5:167835512 3'AG 167835512 Downstream 28bp
chr3 11067249 11067249 1 + C T GBM 11067248 + 11067228 11067268 41 TTCTACATCACACCCAACTTCCGCAAGCTGTCTGACTCCGA TTCTACATCACACCCAACTTCTGCAAGCTGTCTGACTCCGA < 41bp 0.515571638799562 0.770192319265803 0.08517486 0.19559577 prediction 0.509241360932482 Functional Gain - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11067248 chr3:11067249 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_107442 0 0 0 0 1 SLC6A1 chr3:11067269 5'GT 11067269 Upstream 21bp
chr3 39180226 39180226 1 + C T SKCM 39180225 + 39180205 39180245 41 CTCAGGGAGCACCCCGACTACCCCAAGATCAGGGAGGAAAT CTCAGGGAGCACCCCGACTACTCCAAGATCAGGGAGGAAAT < 41bp 0.486590378869955 0.754611312752891 0.121273845 0.94208616 prediction 0.509222625505782 Functional Gain - TTC21A ENSG00000168026 CDS Human protein_coding chr3:39180225 chr3:39180226 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_107444 0 0 0 0 1 TTC21A chr3:39180202 3'AG 39180202 Downstream 25bp
chr1 156145003 156145003 1 + C A THCA 156145002 + 156144982 156145022 41 TGTGCCTGGGACCCTGAGTCCCGAACCTGTTGCCTCCTGTC TGTGCCTGGGACCCTGAGTCCAGAACCTGTTGCCTCCTGTC < 41bp 0.506097500424091 0.760692771264784 0.14839777 0.26590556 prediction 0.509190541681386 Functional Gain - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156145002 chr1:156145003 synonymous SNV . 0 22 hm5C_associated_SNPs_107445 0 0 0 0 1 SEMA4A chr1:156145034 5'GT 156145034 Upstream 32bp
chr6 88128009 88128009 1 + C A rs149134342 88128008 + 88127988 88128028 41 ACTGCCCGGAGCCAGGTATACCGCTACACAGCCATCCTTGA ACTGCCCGGAGCCAGGTATACAGCTACACAGCCATCCTTGA < 41bp 0.497029315231912 0.754583506072026 0.06425369 0.25473267 prediction 0.509167012144052 Functional Gain - CFAP206 ENSG00000213204;ENSG00000272514 CDS Human other chr6:88128008 chr6:88128009 nonsynonymous SNV 0.253 0 22 hm5C_associated_SNPs_107446 0 0 0 0 1 CFAP206 chr6:88127926 3'AG 88127926 Downstream 84bp
chr7 150773473 150773473 1 + C G rs569148643 150773472 + 150773452 150773492 41 TAGCCGCCACCGAGGGACAGCCGAGGGACCGATGGACGAGG TAGCCGCCACCGAGGGACAGCGGAGGGACCGATGGACGAGG < 41bp 0.447159204107021 0.754563910423295 0.72659534 0.8468629 prediction 0.50912782084659 Functional Gain - SLC4A2 ENSG00000244151 ncRNA_exonic Human protein_coding chr7:150773472 chr7:150773473 . . 0 22 hm5C_associated_SNPs_107450 0 0 1 0 1 SLC4A2 chr7:150773374 3'AG 150773374 Downstream 100bp
chr6 10935330 10935330 1 + C A COAD 10935326 + 10935306 10935346 41 CCATCAGAGAAAGAAATACCCGAGCAAAATAACACCACATC CCATCAGAGAAAGAAATACCCGAGAAAAATAACACCACATC < 41bp 0.360405851221131 0.754563880979694 0.6372702 0.784762 prediction 0.509127761959389 Functional Gain - SYCP2L ENSG00000153157 CDS Human protein_coding chr6:10935326 chr6:10935330 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_107451 0 0 0 0 2 SYCP2L chr6:10935291 3'AG 10935291 Downstream 40bp
chr6 10935330 10935330 1 + C A COAD 10935326 + 10935306 10935346 41 CCATCAGAGAAAGAAATACCCGAGCAAAATAACACCACATC CCATCAGAGAAAGAAATACCCGAGAAAAATAACACCACATC < 41bp 0.360405851221131 0.754563880979694 0.6372702 0.784762 prediction 0.509127761959389 Functional Gain - SYCP2L ENSG00000153157 CDS Human protein_coding chr6:10935326 chr6:10935330 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_107451 0 0 0 0 2 SYCP2L chr6:10935420 5'GT 10935420 Upstream 91bp
chr2 159481558 159481558 1 + C T SKCM 159481557 + 159481537 159481577 41 ACCGACCCCCGACCTCTGAACCCCAGTGCATATTCCTCCAC ACCGACCCCCGACCTCTGAACTCCAGTGCATATTCCTCCAC < 41bp 0.538391947125879 0.792943973247648 0.2484084 0.9094682 prediction 0.509104052243539 Functional Gain - PKP4 ENSG00000144283 CDS Human protein_coding chr2:159481557 chr2:159481558 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_107453 0 0 1 0 1 PKP4 chr2:159481467 3'AG 159481467 Downstream 92bp
chr1 11204742 11204742 1 + C G BRCA 11204738 + 11204718 11204758 41 CACCAGATCTGGCGGATGATCTCTCGTCGCTCGGGGACAAG CACCAGATCTGGCGGATGATCTCTGGTCGCTCGGGGACAAG < 41bp 0.53807035624481 0.792608938045022 0.12659699 0.08302313 prediction 0.509077163600425 Functional Gain - MTOR ENSG00000198793 CDS Human protein_coding chr1:11204738 chr1:11204742 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_107457 0 0 0 0 1 MTOR chr1:11204724 3'AG 11204724 Downstream 19bp
chr20 61296383 61296383 1 + C T SKCM 61296382 + 61296362 61296402 41 ACCGGCATGTCCACGTTCAGCCCCAAGTTCTTGGAGTCCCA ACCGGCATGTCCACGTTCAGCTCCAAGTTCTTGGAGTCCCA < 41bp 0.533241371593883 0.787774632098552 0.06948307 0.4368627 prediction 0.509066521009339 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61296382 chr20:61296383 nonsynonymous SNV 0.316 2 22 hm5C_associated_SNPs_107459 0 0 1 0 2 SLCO4A1 chr20:61296286 3'AG 61296286 Downstream 98bp
chr20 61296383 61296383 1 + C T SKCM 61296382 + 61296362 61296402 41 ACCGGCATGTCCACGTTCAGCCCCAAGTTCTTGGAGTCCCA ACCGGCATGTCCACGTTCAGCTCCAAGTTCTTGGAGTCCCA < 41bp 0.533241371593883 0.787774632098552 0.06948307 0.4368627 prediction 0.509066521009339 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61296382 chr20:61296383 nonsynonymous SNV 0.316 2 22 hm5C_associated_SNPs_107459 0 0 1 0 2 SLCO4A1 chr20:61296440 5'GT 61296440 Upstream 58bp
chr22 21403375 21403375 1 + C A rs28504593 21403371 + 21403351 21403391 41 AGGAGCAGGCGGCCCAGCACCTTGCCGAACTCCTGCTGGCC AGGAGCAGGCGGCCCAGCACCTTGACGAACTCCTGCTGGCC < 41bp 0.335167410974431 0.754517063195958 0.39460045 0.5348189 prediction 0.509034126391916 Functional Gain - LRRC74B ENSG00000187905 CDS Human protein_coding chr22:21403371 chr22:21403375 nonsynonymous SNV 0.070 1 25 hm5C_associated_SNPs_107461 0 0 0 0 1 LRRC74B chr22:21403446 5'GT 21403446 Upstream 72bp
chr1 170695491 170695491 1 + C A LUAD 170695487 + 170695467 170695507 41 TGGAGCAGCCCATCGTACCTCGTCCTGCTCCGAGACCCACC TGGAGCAGCCCATCGTACCTCGTCATGCTCCGAGACCCACC < 41bp 0.331023223187516 0.754514940855534 0.2226918 0.19002593 prediction 0.509029881711067 Functional Gain - PRRX1 ENSG00000116132 CDS Human protein_coding chr1:170695487 chr1:170695491 nonsynonymous SNV 0.996 5 25 hm5C_associated_SNPs_107462 0 0 0 0 1 PRRX1 chr1:170695542 5'GT 170695542 Upstream 52bp
chr2 233396344 233396344 1 + T A LUSC 233396340 + 233396320 233396360 41 ACTTCCGAACACCCAGCACCCATGTGCTGTCTGAGGGGGTC ACTTCCGAACACCCAGCACCCATGAGCTGTCTGAGGGGGTC < 41bp 0.444378059279342 0.754510610407004 0.1475066 0.17570469 prediction 0.509021220814007 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233396340 chr2:233396344 nonsynonymous SNV 0.992 3 25 hm5C_associated_SNPs_107464 0 0 0 0 1 CHRND chr2:233396252 3'AG 233396252 Downstream 93bp
chr14 21460308 21460308 1 + T G UCEC 21460306 + 21460286 21460326 41 TATCTCAGACAGAGGAGAAACTTCGTGGAGCAGTGCTACAC TATCTCAGACAGAGGAGAAACTGCGTGGAGCAGTGCTACAC < 41bp 0.612210571443304 0.866716888201167 0.17013392 0.26307496 prediction 0.509012633515726 Functional Gain - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21460306 chr14:21460308 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_107466 0 0 1 0 3 METTL17 chr14:21460251 3'AG 21460251 Downstream 58bp
chr14 21460308 21460308 1 + T G UCEC 21460306 + 21460286 21460326 41 TATCTCAGACAGAGGAGAAACTTCGTGGAGCAGTGCTACAC TATCTCAGACAGAGGAGAAACTGCGTGGAGCAGTGCTACAC < 41bp 0.612210571443304 0.866716888201167 0.17013392 0.26307496 prediction 0.509012633515726 Functional Gain - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21460306 chr14:21460308 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_107466 0 0 1 0 3 METTL17 chr14:21460283 3'AG 21460283 Downstream 26bp
chr14 21460308 21460308 1 + T G UCEC 21460306 + 21460286 21460326 41 TATCTCAGACAGAGGAGAAACTTCGTGGAGCAGTGCTACAC TATCTCAGACAGAGGAGAAACTGCGTGGAGCAGTGCTACAC < 41bp 0.612210571443304 0.866716888201167 0.17013392 0.26307496 prediction 0.509012633515726 Functional Gain - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21460306 chr14:21460308 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_107466 0 0 1 0 3 METTL17 chr14:21460364 5'GT 21460364 Upstream 57bp
chr19 16952676 16952676 1 + T C UCEC 16952674 + 16952654 16952694 41 GTGCCCCTGGAGTCCGATTCCGTGGAATTCAACAACGCCAT GTGCCCCTGGAGTCCGATTCCGCGGAATTCAACAACGCCAT < 41bp 0.5396096172062 0.794115224475749 0.3413056 0.39389393 prediction 0.509011214539098 Functional Gain - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16952674 chr19:16952676 nonsynonymous SNV 0.832 2 23 hm5C_associated_SNPs_107467 0 0 1 0 1 SIN3B chr19:16952579 3'AG 16952579 Downstream 98bp
chr3 186442900 186442900 1 + C A BLCA 186442899 + 186442879 186442919 41 GAGGGCCCTGTGGTGACAGCCCAGTACGACTGCCTCGGCTG GAGGGCCCTGTGGTGACAGCCAAGTACGACTGCCTCGGCTG < 41bp 0.505524143849051 0.760026891054707 0.28731182 0.90489554 prediction 0.509005494411313 Functional Gain - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186442899 chr3:186442900 nonsynonymous SNV 0.215 0 22 hm5C_associated_SNPs_107468 0 0 0 0 1 KNG1 chr3:186442877 3'AG 186442877 Downstream 24bp
chr17 78011930 78011930 1 + C A LGG 78011929 + 78011909 78011949 41 TCTCTAAAACCAGGTCCCATCCGGAAGATGGATCGGCTTCT TCTCTAAAACCAGGTCCCATCAGGAAGATGGATCGGCTTCT < 41bp 0.504748264713215 0.759225154166579 0.885273 0.90676093 prediction 0.50895377890673 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78011929 chr17:78011930 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_107473 0 0 0 0 2 CCDC40 chr17:78011922 3'AG 78011922 Downstream 9bp
chr17 78011930 78011930 1 + C A LGG 78011929 + 78011909 78011949 41 TCTCTAAAACCAGGTCCCATCCGGAAGATGGATCGGCTTCT TCTCTAAAACCAGGTCCCATCAGGAAGATGGATCGGCTTCT < 41bp 0.504748264713215 0.759225154166579 0.885273 0.90676093 prediction 0.50895377890673 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78011929 chr17:78011930 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_107473 0 0 0 0 2 CCDC40 chr17:78011985 5'GT 78011985 Upstream 56bp
chr17 7984215 7984215 1 - G C rs143010639 7984219 - 7984199 7984239 41 CCTCCGGTGCGGAGGCATCGCAACCCCAACCGGCCTGAGTA CCTCCGGTGCGGAGGCATCGCAACGCCAACCGGCCTGAGTA < 41bp 0.457858978541323 0.754476251774067 0.50149864 0.546655 prediction 0.508952503548133 Functional Gain - ALOX12B ENSG00000179477 CDS Human protein_coding chr17:7984219 chr17:7984215 nonsynonymous SNV 0.447 2 25 hm5C_associated_SNPs_107475 0 0 0 0 2 ALOX12B chr17:7984202 5'GT 7984202 Upstream 14bp
chr17 7984215 7984215 1 - G C rs143010639 7984219 - 7984199 7984239 41 CCTCCGGTGCGGAGGCATCGCAACCCCAACCGGCCTGAGTA CCTCCGGTGCGGAGGCATCGCAACGCCAACCGGCCTGAGTA < 41bp 0.457858978541323 0.754476251774067 0.50149864 0.546655 prediction 0.508952503548133 Functional Gain - ALOX12B ENSG00000179477 CDS Human protein_coding chr17:7984219 chr17:7984215 nonsynonymous SNV 0.447 2 25 hm5C_associated_SNPs_107475 0 0 0 0 2 ALOX12B chr17:7984294 3'AG 7984294 Downstream 80bp
chr6 36927113 36927113 1 + C A rs144353254 36927109 + 36927089 36927129 41 AACCTCAGCGCCGCCACCTGCAGCCCAGGCCAGATGTGCGG AACCTCAGCGCCGCCACCTGCAGCACAGGCCAGATGTGCGG < 41bp 0.352710175239783 0.754461126460249 0.41321546 0.4781322 prediction 0.508922252920498 Functional Gain - PI16 ENSG00000164530 CDS Human protein_coding chr6:36927109 chr6:36927113 nonsynonymous SNV 0.150 1 25 hm5C_associated_SNPs_107480 0 0 0 0 1 PI16 chr6:36927142 5'GT 36927142 Upstream 30bp
chrX 100240811 100240811 1 + C A UCEC 100240810 + 100240790 100240830 41 GCCCATGGGCTTGTTTTCGTCCTGGATTCCAGTGACATAAG GCCCATGGGCTTGTTTTCGTCATGGATTCCAGTGACATAAG < 41bp 0.500916093873937 0.755365462251299 0.2056736 0.4003467 prediction 0.508898736754724 Functional Gain - ARL13A ENSG00000174225 CDS Human protein_coding chrX:100240810 chrX:100240811 nonsynonymous SNV 0.967 3 22 hm5C_associated_SNPs_107483 0 0 0 0 1 ARL13A chrX:100240905 5'GT 100240905 Upstream 95bp
chr20 13107341 13107341 1 + T C STAD 13107339 + 13107319 13107359 41 ATCAGATCACTAAAACTTATCATGGGACTGGATGGGACCAC ATCAGATCACTAAAACTTATCACGGGACTGGATGGGACCAC < 41bp 0.484307988265523 0.754367319246636 0.89644176 0.87889826 prediction 0.508734638493273 Functional Gain - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13107339 chr20:13107341 nonsynonymous SNV 0.915 2 23 hm5C_associated_SNPs_107492 0 0 1 0 1 SPTLC3 chr20:13107364 5'GT 13107364 Upstream 24bp
chr1 11718605 11718605 1 + C A PAAD 11718604 + 11718584 11718624 41 CCCCAGCACCTGCCTCAAGTCCCAGGTGGTGGACCTCAAGG CCCCAGCACCTGCCTCAAGTCACAGGTGGTGGACCTCAAGG < 41bp 0.503388883587851 0.757740628215199 0.19430804 0.41762435 prediction 0.508703489254694 Functional Gain - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718604 chr1:11718605 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_107496 0 0 1 2 2 FBXO44 chr1:11718590 3'AG 11718590 Downstream 16bp
chr1 11718605 11718605 1 + C A PAAD 11718604 + 11718584 11718624 41 CCCCAGCACCTGCCTCAAGTCCCAGGTGGTGGACCTCAAGG CCCCAGCACCTGCCTCAAGTCACAGGTGGTGGACCTCAAGG < 41bp 0.503388883587851 0.757740628215199 0.19430804 0.41762435 prediction 0.508703489254694 Functional Gain - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718604 chr1:11718605 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_107496 0 0 1 2 2 FBXO44 chr1:11718685 5'GT 11718685 Upstream 81bp
chr2 27521526 27521526 1 + T C COAD 27521524 + 27521504 27521544 41 TCGTGCAGGCATGAGGTTGTCCTGGACAGACACGGTGTCTA TCGTGCAGGCATGAGGTTGTCCCGGACAGACACGGTGTCTA < 41bp 0.532690965560853 0.787036386737142 0.2610312 0.2962222 prediction 0.508690842352578 Functional Gain - TRIM54 ENSG00000138100 CDS Human protein_coding chr2:27521524 chr2:27521526 nonsynonymous SNV 0.931 4 23 hm5C_associated_SNPs_107498 0 0 0 0 2 TRIM54 chr2:27521435 3'AG 27521435 Downstream 92bp
chr2 27521526 27521526 1 + T C COAD 27521524 + 27521504 27521544 41 TCGTGCAGGCATGAGGTTGTCCTGGACAGACACGGTGTCTA TCGTGCAGGCATGAGGTTGTCCCGGACAGACACGGTGTCTA < 41bp 0.532690965560853 0.787036386737142 0.2610312 0.2962222 prediction 0.508690842352578 Functional Gain - TRIM54 ENSG00000138100 CDS Human protein_coding chr2:27521524 chr2:27521526 nonsynonymous SNV 0.931 4 23 hm5C_associated_SNPs_107498 0 0 0 0 2 TRIM54 chr2:27521607 5'GT 27521607 Upstream 82bp
chr9 137779081 137779081 1 + C G rs144393630 137779080 + 137779060 137779100 41 CCAGGACAATGATCTTAACACCGGAAATTGTGCTGTGATGT CCAGGACAATGATCTTAACACGGGAAATTGTGCTGTGATGT < 41bp 0.601405594857615 0.855745950388127 0.30030882 0.878979 prediction 0.508680711061024 Functional Gain - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137779080 chr9:137779081 synonymous SNV . 0 22 hm5C_associated_SNPs_107499 0 0 0 0 1 FCN2 chr9:137779014 3'AG 137779014 Downstream 68bp
chr22 45929715 45929715 1 + C T COAD 45929714 + 45929694 45929734 41 ATCAACACAGTGGGCTCTTTCCGCTGCCAGCGGGACAGCAG ATCAACACAGTGGGCTCTTTCTGCTGCCAGCGGGACAGCAG < 41bp 0.513710109665114 0.768004435617586 0.51321006 0.2744525 prediction 0.508588651904945 Functional Gain - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45929714 chr22:45929715 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_107503 0 0 1 0 2 FBLN1 chr22:45929641 3'AG 45929641 Downstream 75bp
chr22 45929715 45929715 1 + C T COAD 45929714 + 45929694 45929734 41 ATCAACACAGTGGGCTCTTTCCGCTGCCAGCGGGACAGCAG ATCAACACAGTGGGCTCTTTCTGCTGCCAGCGGGACAGCAG < 41bp 0.513710109665114 0.768004435617586 0.51321006 0.2744525 prediction 0.508588651904945 Functional Gain - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45929714 chr22:45929715 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_107503 0 0 1 0 2 FBLN1 chr22:45929778 5'GT 45929778 Upstream 64bp
chr12 110024578 110024578 1 + T C BLCA 110024576 + 110024556 110024596 41 TAGGAGGAGCCCTCCGATACCATCAAGGGAAGATTTCATCC TAGGAGGAGCCCTCCGATACCACCAAGGGAAGATTTCATCC < 41bp 0.560612566309925 0.814905922759598 0.109994054 0.23332375 prediction 0.508586712899348 Functional Gain - MVK ENSG00000110921 CDS Human protein_coding chr12:110024576 chr12:110024578 synonymous SNV . 0 23 hm5C_associated_SNPs_107504 0 0 1 1 2 MVK chr12:110024559 3'AG 110024559 Downstream 20bp
chr12 110024578 110024578 1 + T C BLCA 110024576 + 110024556 110024596 41 TAGGAGGAGCCCTCCGATACCATCAAGGGAAGATTTCATCC TAGGAGGAGCCCTCCGATACCACCAAGGGAAGATTTCATCC < 41bp 0.560612566309925 0.814905922759598 0.109994054 0.23332375 prediction 0.508586712899348 Functional Gain - MVK ENSG00000110921 CDS Human protein_coding chr12:110024576 chr12:110024578 synonymous SNV . 0 23 hm5C_associated_SNPs_107504 0 0 1 1 2 MVK chr12:110024604 5'GT 110024604 Upstream 27bp
chr17 35299637 35299637 1 + C A rs199823149 35299636 + 35299616 35299656 41 GGAGCCGGGCGAGCTCATCCCCAATGGTCCCTTCTCCTTCT GGAGCCGGGCGAGCTCATCCCAAATGGTCCCTTCTCCTTCT < 41bp 0.499201020356745 0.754288118960912 0.31643575 0.8122637 prediction 0.508576237921824 Functional Gain - LHX1 ENSG00000132130 CDS Human other chr17:35299636 chr17:35299637 synonymous SNV . 0 22 hm5C_associated_SNPs_107506 0 0 0 0 1 LHX1 chr17:35299662 5'GT 35299662 Upstream 26bp
chr19 19212614 19212614 1 + T A STAD 19212610 + 19212590 19212630 41 CGTGACCACAGGCAAGTGCTCAGCTCCCTGCTGTCTGGGGC CGTGACCACAGGCAAGTGCTCAGCACCCTGCTGTCTGGGGC < 41bp 0.4259610562774 0.754284188968048 0.68058044 0.49508122 prediction 0.508568377936095 Functional Gain - SLC25A42 ENSG00000181035 CDS Human protein_coding chr19:19212610 chr19:19212614 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_107507 0 0 1 0 1 SLC25A42 chr19:19212695 5'GT 19212695 Upstream 82bp
chr14 64909115 64909115 1 + C T UCEC 64909114 + 64909094 64909134 41 CTCAAGATGCACGGGGGCGGCCCCACGGTGAGTGGTGGGTT CTCAAGATGCACGGGGGCGGCTCCACGGTGAGTGGTGGGTT < 41bp 0.537395612787774 0.791654349260988 0.821502 0.9252401 prediction 0.508517472946429 Functional Gain - MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64909114 chr14:64909115 nonsynonymous SNV 0.970 2 22 hm5C_associated_SNPs_107510 0 0 1 0 1 MTHFD1 chr14:64909120 5'GT 64909120 Upstream 6bp
chr12 118575944 118575944 1 + C T SKCM 118575943 + 118575923 118575963 41 ATGCTCCCAGCAGGAAGGATCCCAAATACAGGTGAGAGGTG ATGCTCCCAGCAGGAAGGATCTCAAATACAGGTGAGAGGTG < 41bp 0.51400971267938 0.768259742662405 0.15740398 0.69359887 prediction 0.50850005996605 Functional Gain - PEBP1 ENSG00000089220 CDS Human protein_coding chr12:118575943 chr12:118575944 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_107511 0 0 1 0 1 PEBP1 chr12:118575953 5'GT 118575953 Upstream 10bp
chr1 175052996 175052996 1 + C G COAD 175052995 + 175052975 175053015 41 TACTACAAGCTGCGATATGGCCCCATGACAGGACAGGAGGT TACTACAAGCTGCGATATGGCGCCATGACAGGACAGGAGGT < 41bp 0.452825406003218 0.754235929043016 0.056359112 0.21613616 prediction 0.508471858086032 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175052995 chr1:175052996 nonsynonymous SNV 0.413 1 22 hm5C_associated_SNPs_107513 0 0 0 0 1 TNN chr1:175053071 5'GT 175053071 Upstream 76bp
chrX 68058642 68058642 1 + C A DLBC 68058641 + 68058621 68058661 41 TGTTGGTCACCTGCAATAGGCCAGAGCAGGAAATACGCTTT TGTTGGTCACCTGCAATAGGCAAGAGCAGGAAATACGCTTT < 41bp 0.507685119640361 0.761904495491397 0.22930804 0.41700673 prediction 0.508438751702073 Functional Gain - EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68058641 chrX:68058642 nonsynonymous SNV 0.993 5 22 hm5C_associated_SNPs_107515 0 0 0 0 1 EFNB1 chrX:68058737 5'GT 68058737 Upstream 96bp
chr1 46650664 46650664 1 + T A UCEC 46650660 + 46650640 46650680 41 CTGTGGCTTCACCAACTATACGGATTTTGAGGACTCACCCT CTGTGGCTTCACCAACTATACGGAATTTGAGGACTCACCCT < 41bp 0.597129115780175 0.851342536094304 0.22601524 0.45695475 prediction 0.508426840628258 Functional Gain - TSPAN1 ENSG00000117472 CDS Human protein_coding chr1:46650660 chr1:46650664 nonsynonymous SNV 0.882 5 25 hm5C_associated_SNPs_107517 0 0 0 0 1 TSPAN1 chr1:46650632 3'AG 46650632 Downstream 33bp
chr12 7290621 7290621 1 + T C STAD 7290619 + 7290599 7290639 41 CCTTCCTCTACTGGCCCCTGCTTGAGAGTGCCCGCCCAGTC CCTTCCTCTACTGGCCCCTGCTCGAGAGTGCCCGCCCAGTC < 41bp 0.571769774524398 0.825965420310056 0.067599624 0.16824642 prediction 0.508391291571315 Functional Gain - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7290619 chr12:7290621 synonymous SNV . 0 23 hm5C_associated_SNPs_107519 0 0 1 0 2 CLSTN3 chr12:7290551 3'AG 7290551 Downstream 71bp
chr12 7290621 7290621 1 + T C STAD 7290619 + 7290599 7290639 41 CCTTCCTCTACTGGCCCCTGCTTGAGAGTGCCCGCCCAGTC CCTTCCTCTACTGGCCCCTGCTCGAGAGTGCCCGCCCAGTC < 41bp 0.571769774524398 0.825965420310056 0.067599624 0.16824642 prediction 0.508391291571315 Functional Gain - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7290619 chr12:7290621 synonymous SNV . 0 23 hm5C_associated_SNPs_107519 0 0 1 0 2 CLSTN3 chr12:7290663 5'GT 7290663 Upstream 43bp
chr10 88930319 88930319 1 + C A UCEC 88930318 + 88930298 88930338 41 CCTACCTCAGAGATCTTCCTCCGAGGCAGCCTCAGAGGGTG CCTACCTCAGAGATCTTCCTCAGAGGCAGCCTCAGAGGGTG < 41bp 0.511388247659923 0.765568350358746 0.59617084 0.8730879 prediction 0.508360205397645 Functional Gain - FAM35A ENSG00000122376 CDS Human protein_coding chr10:88930318 chr10:88930319 nonsynonymous SNV 0.736 0 22 hm5C_associated_SNPs_107521 0 0 0 0 1 FAM35A chr10:88930235 3'AG 88930235 Downstream 85bp
chr6 47775918 47775918 1 + T C UCEC 47775916 + 47775896 47775936 41 ATGTTGATTTGTGCTGGATTCCTGATTGCCTGGATTCCTTA ATGTTGATTTGTGCTGGATTCCCGATTGCCTGGATTCCTTA < 41bp 0.562949912684861 0.817125409768521 0.025069416 0.40423432 prediction 0.50835099416732 Functional Gain - OPN5 ENSG00000124818 CDS Human protein_coding chr6:47775916 chr6:47775918 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_107523 0 0 0 0 1 OPN5 chr6:47775890 3'AG 47775890 Downstream 29bp
chr10 3151656 3151656 1 + T A rs202105167 3151652 + 3151632 3151672 41 ACCACGCCGTGCGCCTGCCGCTGATGGAGTGCGTGCAGATG ACCACGCCGTGCGCCTGCCGCTGAAGGAGTGCGTGCAGATG < 41bp 0.441990792866648 0.754158318619798 0.20544016 0.18770552 prediction 0.508316637239595 Functional Gain - PFKP ENSG00000067057 CDS Human protein_coding chr10:3151652 chr10:3151656 nonsynonymous SNV 0.764 2 25 hm5C_associated_SNPs_107526 0 0 1 0 1 PFKP chr10:3151672 5'GT 3151672 Upstream 17bp
chr12 113349021 113349021 1 + T A LUSC 113349017 + 113348997 113349037 41 AGCTCAAGAGCCTCATCCGCCTAGTCAAGCACTGGTACCAA AGCTCAAGAGCCTCATCCGCCTAGACAAGCACTGGTACCAA < 41bp 0.620883966152601 0.875037501230851 0.19989917 0.26073384 prediction 0.508307070156501 Functional Gain - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113349017 chr12:113349021 nonsynonymous SNV 0.993 3 25 hm5C_associated_SNPs_107527 0 0 0 0 1 OAS1 chr12:113349040 5'GT 113349040 Upstream 20bp
chr19 36124064 36124064 1 + T G LUSC 36124062 + 36124042 36124082 41 CCCTCGTGGGCCCCCCTCTGCCTGGGCCCCCTGGACCACCC CCCTCGTGGGCCCCCCTCTGCCGGGGCCCCCTGGACCACCC < 41bp 0.643395962935587 0.897529263430982 0.15108341 0.92896765 prediction 0.508266600990791 Functional Gain - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124062 chr19:36124064 synonymous SNV . 0 23 hm5C_associated_SNPs_107531 0 0 1 0 4 RBM42 chr19:36123979 3'AG 36123979 Downstream 86bp
chr19 36124064 36124064 1 + T G LUSC 36124062 + 36124042 36124082 41 CCCTCGTGGGCCCCCCTCTGCCTGGGCCCCCTGGACCACCC CCCTCGTGGGCCCCCCTCTGCCGGGGCCCCCTGGACCACCC < 41bp 0.643395962935587 0.897529263430982 0.15108341 0.92896765 prediction 0.508266600990791 Functional Gain - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124062 chr19:36124064 synonymous SNV . 0 23 hm5C_associated_SNPs_107531 0 0 1 0 4 RBM42 chr19:36124000 3'AG 36124000 Downstream 65bp
chr19 36124064 36124064 1 + T G LUSC 36124062 + 36124042 36124082 41 CCCTCGTGGGCCCCCCTCTGCCTGGGCCCCCTGGACCACCC CCCTCGTGGGCCCCCCTCTGCCGGGGCCCCCTGGACCACCC < 41bp 0.643395962935587 0.897529263430982 0.15108341 0.92896765 prediction 0.508266600990791 Functional Gain - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124062 chr19:36124064 synonymous SNV . 0 23 hm5C_associated_SNPs_107531 0 0 1 0 4 RBM42 chr19:36124003 3'AG 36124003 Downstream 62bp
chr19 36124064 36124064 1 + T G LUSC 36124062 + 36124042 36124082 41 CCCTCGTGGGCCCCCCTCTGCCTGGGCCCCCTGGACCACCC CCCTCGTGGGCCCCCCTCTGCCGGGGCCCCCTGGACCACCC < 41bp 0.643395962935587 0.897529263430982 0.15108341 0.92896765 prediction 0.508266600990791 Functional Gain - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124062 chr19:36124064 synonymous SNV . 0 23 hm5C_associated_SNPs_107531 0 0 1 0 4 RBM42 chr19:36124154 5'GT 36124154 Upstream 91bp
chr3 195953863 195953863 1 + C A LUSC 195953859 + 195953839 195953879 41 TGGGCCCTGTGGAACTTGCCCTCACTAGCATCCTGACCTTG TGGGCCCTGTGGAACTTGCCCTCAATAGCATCCTGACCTTG < 41bp 0.32379407081067 0.754046275784704 0.0704841 0.036477953 prediction 0.508092551569409 Functional Gain - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195953859 chr3:195953863 nonsynonymous SNV 0.596 0 25 hm5C_associated_SNPs_107542 0 0 1 0 1 SLC51A chr3:195953836 3'AG 195953836 Downstream 28bp
chr4 100521862 100521862 1 + C T UCEC 100521861 + 100521841 100521881 41 CCTGTGGATTTGCTTCTCATCCCAATGAAGAACTCCTGAGA CCTGTGGATTTGCTTCTCATCTCAATGAAGAACTCCTGAGA < 41bp 0.500003020688637 0.754044064218108 0.0662823 0.053893596 prediction 0.508082087058941 Functional Gain - MTTP ENSG00000138823 CDS Human protein_coding chr4:100521861 chr4:100521862 nonsynonymous SNV 0.941 4 22 hm5C_associated_SNPs_107544 0 0 1 0 1 MTTP chr4:100521890 5'GT 100521890 Upstream 29bp
chr1 100740390 100740390 1 + C T GBM 100740389 + 100740369 100740409 41 ACTTTTCATAGGGGATATTACCCAAAAGGGGGTGGTGAAGT ACTTTTCATAGGGGATATTACTCAAAAGGGGGTGGTGAAGT < 41bp 0.505452393495692 0.759448726049401 0.12814516 0.27063572 prediction 0.507992665107418 Functional Gain - RTCA ENSG00000137996 CDS Human protein_coding chr1:100740389 chr1:100740390 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_107550 0 0 1 0 1 RTCA chr1:100740380 3'AG 100740380 Downstream 11bp
chr9 118068269 118068269 1 + T G rs75825293 118068266 + 118068246 118068286 41 CTTGAAGGGCTATTGAAGGCCGCTAGAAAGGTATTGTTTAC CTTGAAGGGCTATTGAAGGCCGCGAGAAAGGTATTGTTTAC < 41bp 0.415034496333828 0.753984515801825 0.17487037 0.3000587 prediction 0.50796903160365 Functional Gain - DEC1 ENSG00000173077 UTR5 Human protein_coding chr9:118068266 chr9:118068269 . . 0 24 hm5C_associated_SNPs_107552 0 0 0 0 2 DEC1 chr9:118068185 3'AG 118068185 Downstream 85bp
chr9 118068269 118068269 1 + T G rs75825293 118068266 + 118068246 118068286 41 CTTGAAGGGCTATTGAAGGCCGCTAGAAAGGTATTGTTTAC CTTGAAGGGCTATTGAAGGCCGCGAGAAAGGTATTGTTTAC < 41bp 0.415034496333828 0.753984515801825 0.17487037 0.3000587 prediction 0.50796903160365 Functional Gain - DEC1 ENSG00000173077 UTR5 Human protein_coding chr9:118068266 chr9:118068269 . . 0 24 hm5C_associated_SNPs_107552 0 0 0 0 2 DEC1 chr9:118068275 5'GT 118068275 Upstream 7bp
chr3 101574609 101574609 1 + C T SKCM 101574608 + 101574588 101574628 41 CTTCACTGTGCAGTCATAGCCCACAATGCTGTGGTCCATGA CTTCACTGTGCAGTCATAGCCTACAATGCTGTGGTCCATGA < 41bp 0.535666086760905 0.789640774172488 0.029360324 0.88752294 prediction 0.507949374823167 Functional Gain - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101574608 chr3:101574609 nonsynonymous SNV 0.955 4 22 hm5C_associated_SNPs_107554 0 0 1 0 1 NFKBIZ chr3:101574577 3'AG 101574577 Downstream 33bp
chr9 90534188 90534188 1 + C A LUAD 90534184 + 90534164 90534204 41 TCCCAGCGTCATCTTGTCTCCCAGCGTCATCTTGTCTCCCA TCCCAGCGTCATCTTGTCTCCCAGAGTCATCTTGTCTCCCA < 41bp 0.399450570478575 0.753971336088191 0.08821106 0.22825778 prediction 0.507942672176382 Functional Gain - SPATA31C1 ENSG00000230246 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:90534184 chr9:90534188 . . 0 25 hm5C_associated_SNPs_107555 0 0 0 0 2 SPATA31C1 chr9:90534170 3'AG 90534170 Downstream 19bp
chr9 90534188 90534188 1 + C A LUAD 90534184 + 90534164 90534204 41 TCCCAGCGTCATCTTGTCTCCCAGCGTCATCTTGTCTCCCA TCCCAGCGTCATCTTGTCTCCCAGAGTCATCTTGTCTCCCA < 41bp 0.399450570478575 0.753971336088191 0.08821106 0.22825778 prediction 0.507942672176382 Functional Gain - SPATA31C1 ENSG00000230246 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:90534184 chr9:90534188 . . 0 25 hm5C_associated_SNPs_107555 0 0 0 0 2 SPATA31C1 chr9:90534263 5'GT 90534263 Upstream 76bp
chr2 36737231 36737231 1 + C G SKCM 36737230 + 36737210 36737250 41 TCTGTGAGTGCCGCCCAAGGCCCAAGAAGTGCAGACCCATA TCTGTGAGTGCCGCCCAAGGCGCAAGAAGTGCAGACCCATA < 41bp 0.452822993965951 0.753968870861277 0.013660818 0.055920184 prediction 0.507937741722555 Functional Gain - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36737230 chr2:36737231 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_107557 0 0 1 0 1 CRIM1 chr2:36737282 5'GT 36737282 Upstream 52bp
chr3 142496483 142496483 1 + T G UCEC 142496481 + 142496461 142496501 41 AATTTTATCACAGGTTTCGTCTTGATATATATCGATGTTTG AATTTTATCACAGGTTTCGTCTGGATATATATCGATGTTTG < 41bp 0.440451250730255 0.753957890255774 0.1361306 0.30386734 prediction 0.507915780511548 Functional Gain - TRPC1 ENSG00000144935 CDS Human protein_coding chr3:142496481 chr3:142496483 synonymous SNV . 0 23 hm5C_associated_SNPs_107558 0 0 0 0 1 TRPC1 chr3:142496474 3'AG 142496474 Downstream 10bp
chr1 37940207 37940207 1 + C A rs555847817 37940203 + 37940183 37940223 41 GACTCGGCCCCATGGAGACGCCGCCGGCCGCCGCTGGCGCA GACTCGGCCCCATGGAGACGCCGCAGGCCGCCGCTGGCGCA < 41bp 0.432957292768433 0.75394982052505 0.27420413 0.33429307 prediction 0.5078996410501 Functional Gain - ZC3H12A ENSG00000163874 UTR5 Human protein_coding chr1:37940203 chr1:37940207 . . 0 25 hm5C_associated_SNPs_107559 0 0 1 0 1 ZC3H12A chr1:37940230 5'GT 37940230 Upstream 24bp
chr1 228327999 228327999 1 + C G rs4653908 228327998 + 228327978 228328018 41 TCAGTGGGCGGAAGAGGTGGCCCCGGATGCTGCGGCGCCCG TCAGTGGGCGGAAGAGGTGGCGCCGGATGCTGCGGCGCCCG < 41bp 0.556611760445542 0.810559017330265 0.8610865 0.8801372 prediction 0.507894513769447 Functional Gain - GUK1 ENSG00000143774 UTR5 Human protein_coding chr1:228327998 chr1:228327999 . . 0 22 hm5C_associated_SNPs_107560 0 0 1 0 1 GUK1 chr1:228328064 5'GT 228328064 Upstream 66bp
chr17 73812971 73812971 1 + C T CESC 73812970 + 73812950 73812990 41 TGCCTGTGAGCCCCTCCAGCCCGCATGCCCCTGACCTCAGT TGCCTGTGAGCCCCTCCAGCCTGCATGCCCCTGACCTCAGT < 41bp 0.483792284019509 0.753938829965413 0.114346 0.48039213 prediction 0.507877659930825 Functional Gain - UNK ENSG00000132478 CDS Human protein_coding chr17:73812970 chr17:73812971 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_107561 0 0 0 0 1 UNK chr17:73812993 5'GT 73812993 Upstream 23bp
chr19 14676612 14676612 1 + C A LIHC 14676608 + 14676588 14676628 41 ATGACCATCTGGGCCAAGGGCAAGCACCGCAGCTACCTGAA ATGACCATCTGGGCCAAGGGCAAGAACCGCAGCTACCTGAA < 41bp 0.663368908496127 0.917291631395 0.13756487 0.36496538 prediction 0.507845445797747 Functional Gain - TECR ENSG00000099797 CDS Human protein_coding chr19:14676608 chr19:14676612 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_107562 0 0 0 1 1 TECR chr19:14676556 3'AG 14676556 Downstream 57bp
chr16 5050737 5050737 1 + T A LIHC 5050733 + 5050713 5050753 41 AGGCCGTGGGGGAGGAGGCGCTGCTGCGGCATGTGAGTCAG AGGCCGTGGGGGAGGAGGCGCTGCAGCGGCATGTGAGTCAG < 41bp 0.61961381230742 0.87352732547625 0.34739077 0.5404556 prediction 0.50782702633766 Functional Gain - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5050733 chr16:5050737 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_107563 0 0 0 0 2 SEC14L5 chr16:5050656 3'AG 5050656 Downstream 82bp
chr16 5050737 5050737 1 + T A LIHC 5050733 + 5050713 5050753 41 AGGCCGTGGGGGAGGAGGCGCTGCTGCGGCATGTGAGTCAG AGGCCGTGGGGGAGGAGGCGCTGCAGCGGCATGTGAGTCAG < 41bp 0.61961381230742 0.87352732547625 0.34739077 0.5404556 prediction 0.50782702633766 Functional Gain - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5050733 chr16:5050737 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_107563 0 0 0 0 2 SEC14L5 chr16:5050744 5'GT 5050744 Upstream 8bp
chr9 130428533 130428533 1 + C G BRCA 130428529 + 130428509 130428549 41 TGCTCCATGAATTGACTTTTCAGGCTATGAGTTATGATCTG TGCTCCATGAATTGACTTTTCAGGGTATGAGTTATGATCTG < 41bp 0.567529701707349 0.82143101825026 0.47996986 0.8968749 prediction 0.507802633085823 Functional Gain - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130428529 chr9:130428533 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_107565 0 0 1 0 2 STXBP1 chr9:130428445 3'AG 130428445 Downstream 89bp
chr9 130428533 130428533 1 + C G BRCA 130428529 + 130428509 130428549 41 TGCTCCATGAATTGACTTTTCAGGCTATGAGTTATGATCTG TGCTCCATGAATTGACTTTTCAGGGTATGAGTTATGATCTG < 41bp 0.567529701707349 0.82143101825026 0.47996986 0.8968749 prediction 0.507802633085823 Functional Gain - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130428529 chr9:130428533 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_107565 0 0 1 0 2 STXBP1 chr9:130428575 5'GT 130428575 Upstream 43bp
chr7 27209296 27209296 1 + C G rs577697542 27209295 + 27209275 27209315 41 CTGGCCCGGCCCAGCCCAGCCCCTAGGCAACCTGCGCCCGC CTGGCCCGGCCCAGCCCAGCCGCTAGGCAACCTGCGCCCGC < 41bp 0.579573793132624 0.833470035528919 0.42152193 0.8705002 prediction 0.507792484792589 Functional Gain - HOXA10-AS ENSG00000253187 ncRNA_exonic Human antisense chr7:27209295 chr7:27209296 . . 0 22 hm5C_associated_SNPs_107566 0 0 0 0 1 HOXA10-AS chr7:27209383 5'GT 27209383 Upstream 88bp
chr5 10262641 10262641 1 + C A UCEC 10262637 + 10262617 10262657 41 CTTCACGATGCTTTGTGTGTCATCCGGAACCTCATCCGCGA CTTCACGATGCTTTGTGTGTCATCAGGAACCTCATCCGCGA < 41bp 0.340535024325741 0.753890816628778 0.053955287 0.065222085 prediction 0.507781633257556 Functional Gain - CCT5 ENSG00000150753 CDS Human protein_coding chr5:10262637 chr5:10262641 synonymous SNV . 0 25 hm5C_associated_SNPs_107567 0 0 1 0 2 CCT5 chr5:10262593 3'AG 10262593 Downstream 49bp
chr5 10262641 10262641 1 + C A UCEC 10262637 + 10262617 10262657 41 CTTCACGATGCTTTGTGTGTCATCCGGAACCTCATCCGCGA CTTCACGATGCTTTGTGTGTCATCAGGAACCTCATCCGCGA < 41bp 0.340535024325741 0.753890816628778 0.053955287 0.065222085 prediction 0.507781633257556 Functional Gain - CCT5 ENSG00000150753 CDS Human protein_coding chr5:10262637 chr5:10262641 synonymous SNV . 0 25 hm5C_associated_SNPs_107567 0 0 1 0 2 CCT5 chr5:10262730 5'GT 10262730 Upstream 90bp
chr6 130381246 130381246 1 + T C rs7451021 130381244 + 130381224 130381264 41 TGAAATTAGAAGGCGTGGATCCTGAGCATCAGTCTGTGTAC TGAAATTAGAAGGCGTGGATCCCGAGCATCAGTCTGTGTAC < 41bp 0.469261196482101 0.753871348764679 0.06954396 0.22648314 prediction 0.507742697529357 Functional Gain - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130381244 chr6:130381246 synonymous SNV . 0 23 hm5C_associated_SNPs_107571 0 0 1 0 2 L3MBTL3 chr6:130381181 3'AG 130381181 Downstream 66bp
chr6 130381246 130381246 1 + T C rs7451021 130381244 + 130381224 130381264 41 TGAAATTAGAAGGCGTGGATCCTGAGCATCAGTCTGTGTAC TGAAATTAGAAGGCGTGGATCCCGAGCATCAGTCTGTGTAC < 41bp 0.469261196482101 0.753871348764679 0.06954396 0.22648314 prediction 0.507742697529357 Functional Gain - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130381244 chr6:130381246 synonymous SNV . 0 23 hm5C_associated_SNPs_107571 0 0 1 0 2 L3MBTL3 chr6:130381285 5'GT 130381285 Upstream 40bp
chr12 113515241 113515241 1 + C A LUAD 113515237 + 113515217 113515257 41 TTTCGAGTACAGGCACCATGCGGCCCGTGCGGCGCAACTTC TTTCGAGTACAGGCACCATGCGGCACGTGCGGCGCAACTTC < 41bp 0.666134095164476 0.919999492815318 0.48455095 0.7968411 prediction 0.507730795301684 Functional Gain - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113515237 chr12:113515241 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_107574 0 0 0 0 1 DTX1 chr12:113515229 3'AG 113515229 Downstream 13bp
chr4 83822022 83822022 1 + C A PAAD 83822018 + 83821998 83822038 41 ACCGTGCTCAGCCGGGAGCGCGGCCTCTCCTTCCACCAGTG ACCGTGCTCAGCCGGGAGCGCGGCATCTCCTTCCACCAGTG < 41bp 0.656357378442463 0.910220964527187 0.6224171 0.83088803 prediction 0.507727172169448 Functional Gain - THAP9 ENSG00000168152 CDS Human protein_coding chr4:83822018 chr4:83822022 nonsynonymous SNV 0.951 1 25 hm5C_associated_SNPs_107575 0 0 0 0 1 THAP9 chr4:83822035 5'GT 83822035 Upstream 14bp
chr11 33369523 33369523 1 + C A UCEC 33369519 + 33369499 33369539 41 TTGCACATGTTGTCTGGCCTCAGCCTGCCACTACCAAGAAA TTGCACATGTTGTCTGGCCTCAGCATGCCACTACCAAGAAA < 41bp 0.336261170110624 0.753856115253508 0.2755844 0.40807486 prediction 0.507712230507016 Functional Gain - HIPK3 ENSG00000110422 CDS Human protein_coding chr11:33369519 chr11:33369523 nonsynonymous SNV 0.746 4 25 hm5C_associated_SNPs_107576 0 0 0 0 1 HIPK3 chr11:33369559 5'GT 33369559 Upstream 37bp
chr16 14755800 14755800 1 + C G KIRP 14755799 + 14755779 14755819 41 CTATACGCCCTCAAGAGCTCCCCCAGGCTGAGTCTGCTCTA CTATACGCCCTCAAGAGCTCCGCCAGGCTGAGTCTGCTCTA < 41bp 0.600096346946624 0.853946105033582 0.11641693 0.24802989 prediction 0.507699516173916 Functional Gain - BFAR ENSG00000103429 CDS Human protein_coding chr16:14755799 chr16:14755800 nonsynonymous SNV 0.349 4 22 hm5C_associated_SNPs_107578 0 0 1 0 1 BFAR chr16:14755749 3'AG 14755749 Downstream 52bp
chr21 43979198 43979198 1 + C A LIHC 43979197 + 43979177 43979217 41 TCACAGGGGCCTTGAAAATTCCAGTAAGTAAACGTGCCCAG TCACAGGGGCCTTGAAAATTCAAGTAAGTAAACGTGCCCAG < 41bp 0.520727100021082 0.774574740752866 0.38384202 0.50601417 prediction 0.507695281463567 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43979197 chr21:43979198 nonsynonymous SNV 0.012 4 22 hm5C_associated_SNPs_107579 0 0 0 0 1 SLC37A1 chr21:43979199 5'GT 43979199 Upstream 2bp
chr6 112375585 112375585 1 + C G BLCA 112375581 + 112375561 112375601 41 ATGCAGGGGCTCCTCTTCTCCACTCTTCTGCTTGCTGGCCT ATGCAGGGGCTCCTCTTCTCCACTGTTCTGCTTGCTGGCCT < 41bp 0.466935882901265 0.753842840404714 0.1816149 0.122179806 prediction 0.507685680809429 Functional Gain - WISP3 ENSG00000112761 CDS Human protein_coding chr6:112375581 chr6:112375585 nonsynonymous SNV 0.011 0 25 hm5C_associated_SNPs_107580 0 0 0 0 2 WISP3 chr6:112375538 3'AG 112375538 Downstream 48bp
chr6 112375585 112375585 1 + C G BLCA 112375581 + 112375561 112375601 41 ATGCAGGGGCTCCTCTTCTCCACTCTTCTGCTTGCTGGCCT ATGCAGGGGCTCCTCTTCTCCACTGTTCTGCTTGCTGGCCT < 41bp 0.466935882901265 0.753842840404714 0.1816149 0.122179806 prediction 0.507685680809429 Functional Gain - WISP3 ENSG00000112761 CDS Human protein_coding chr6:112375581 chr6:112375585 nonsynonymous SNV 0.011 0 25 hm5C_associated_SNPs_107580 0 0 0 0 2 WISP3 chr6:112375608 5'GT 112375608 Upstream 24bp
chr7 23221735 23221735 1 + C G PAAD 23221734 + 23221714 23221754 41 TGTCAATTCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCG TGTCAATTCTTCCTTCAAGGCGGGTGCCGCTTTGGAGATCG < 41bp 0.592063676884803 0.845905526397982 0.10089421 0.5935543 prediction 0.507683699026358 Functional Gain - NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221734 chr7:23221735 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_107581 0 0 1 0 1 NUPL2 chr7:23221825 5'GT 23221825 Upstream 91bp
chr20 2730134 2730134 1 + C A LIHC 2730133 + 2730113 2730153 41 CACAACAACTCCAAGCATGGCCGCAGGGCGCGCCGCCTGGA CACAACAACTCCAAGCATGGCAGCAGGGCGCGCCGCCTGGA < 41bp 0.511395065573708 0.765220883666169 0.060181856 0.1137647 prediction 0.507651636184921 Functional Gain - EBF4 ENSG00000088881 CDS Human protein_coding chr20:2730133 chr20:2730134 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_107583 0 0 0 0 2 EBF4 chr20:2730047 3'AG 2730047 Downstream 88bp
chr20 2730134 2730134 1 + C A LIHC 2730133 + 2730113 2730153 41 CACAACAACTCCAAGCATGGCCGCAGGGCGCGCCGCCTGGA CACAACAACTCCAAGCATGGCAGCAGGGCGCGCCGCCTGGA < 41bp 0.511395065573708 0.765220883666169 0.060181856 0.1137647 prediction 0.507651636184921 Functional Gain - EBF4 ENSG00000088881 CDS Human protein_coding chr20:2730133 chr20:2730134 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_107583 0 0 0 0 2 EBF4 chr20:2730164 5'GT 2730164 Upstream 31bp
chr1 97235320 97235320 1 + T C LIHC 97235318 + 97235298 97235338 41 AAATGGATGGTGCTCCTTCTCGTGTACTTCATATTCGAAAA AAATGGATGGTGCTCCTTCTCGCGTACTTCATATTCGAAAA < 41bp 0.518320837025518 0.772139509269438 0.19648379 0.1408425 prediction 0.507637344487839 Functional Gain - PTBP2 ENSG00000117569 CDS Human protein_coding chr1:97235318 chr1:97235320 synonymous SNV . 0 23 hm5C_associated_SNPs_107584 0 0 1 0 1 PTBP2 chr1:97235259 3'AG 97235259 Downstream 62bp
chr7 55468954 55468954 1 + C T LUAD 55468953 + 55468933 55468973 41 CCGCTGTTGTACCAGTGGCACCGGAAGCAGTACGTTGGAGC CCGCTGTTGTACCAGTGGCACTGGAAGCAGTACGTTGGAGC < 41bp 0.502654144913202 0.756461183982283 0.2949046 0.26425707 prediction 0.507614078138163 Functional Gain - LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55468953 chr7:55468954 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_107586 0 0 1 0 2 LANCL2 chr7:55468867 3'AG 55468867 Downstream 88bp
chr7 55468954 55468954 1 + C T LUAD 55468953 + 55468933 55468973 41 CCGCTGTTGTACCAGTGGCACCGGAAGCAGTACGTTGGAGC CCGCTGTTGTACCAGTGGCACTGGAAGCAGTACGTTGGAGC < 41bp 0.502654144913202 0.756461183982283 0.2949046 0.26425707 prediction 0.507614078138163 Functional Gain - LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55468953 chr7:55468954 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_107586 0 0 1 0 2 LANCL2 chr7:55469013 5'GT 55469013 Upstream 60bp
chr6 35285722 35285722 1 + C T STAD 35285721 + 35285701 35285741 41 TTCTGTGTGAAGACAGCCAACCGCACGTATGAGATGAGCGC TTCTGTGTGAAGACAGCCAACTGCACGTATGAGATGAGCGC < 41bp 0.495897937053797 0.753795640302223 0.018645972 0.07771841 prediction 0.507591280604446 Functional Gain - DEF6 ENSG00000023892 CDS Human protein_coding chr6:35285721 chr6:35285722 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_107588 0 0 0 0 2 DEF6 chr6:35285668 3'AG 35285668 Downstream 55bp
chr6 35285722 35285722 1 + C T STAD 35285721 + 35285701 35285741 41 TTCTGTGTGAAGACAGCCAACCGCACGTATGAGATGAGCGC TTCTGTGTGAAGACAGCCAACTGCACGTATGAGATGAGCGC < 41bp 0.495897937053797 0.753795640302223 0.018645972 0.07771841 prediction 0.507591280604446 Functional Gain - DEF6 ENSG00000023892 CDS Human protein_coding chr6:35285721 chr6:35285722 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_107588 0 0 0 0 2 DEF6 chr6:35285776 5'GT 35285776 Upstream 55bp
chr8 134225321 134225321 1 + C T KIRP 134225320 + 134225300 134225340 41 CGGAGGCTGCCATCTGTGACCCCCACCGGGGCCTCTACTGT CGGAGGCTGCCATCTGTGACCTCCACCGGGGCCTCTACTGT < 41bp 0.514460291155748 0.768242419003676 0.009201229 0.9287699 prediction 0.507564255695858 Functional Gain - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134225320 chr8:134225321 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_107589 0 0 0 0 2 WISP1 chr8:134225363 5'GT 134225363 Upstream 43bp
chr8 134225321 134225321 1 + C T KIRP 134225320 + 134225300 134225340 41 CGGAGGCTGCCATCTGTGACCCCCACCGGGGCCTCTACTGT CGGAGGCTGCCATCTGTGACCTCCACCGGGGCCTCTACTGT < 41bp 0.514460291155748 0.768242419003676 0.009201229 0.9287699 prediction 0.507564255695858 Functional Gain - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134225320 chr8:134225321 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_107589 0 0 0 0 2 WISP1 chr8:134225386 5'GT 134225386 Upstream 66bp
chr3 52514271 52514271 1 + C T rs71297399 52514270 + 52514250 52514290 41 CTCCCCTCCCACTGTGGCTCCCGCATCTGCCTCCCTGCCCC CTCCCCTCCCACTGTGGCTCCTGCATCTGCCTCCCTGCCCC < 41bp 0.488523359062773 0.753781786757212 0.06619036 0.10210419 prediction 0.507563573514423 Functional Gain - NISCH ENSG00000010322 CDS Human protein_coding chr3:52514270 chr3:52514271 synonymous SNV . 0 22 hm5C_associated_SNPs_107590 0 0 1 0 1 NISCH chr3:52514311 5'GT 52514311 Upstream 41bp
chr5 81268070 81268070 1 + C G rs111549985 81268069 + 81268049 81268089 41 CCAGCTCTCCTCCCCCTGGCCCCGTCGCCCCGCCCTCGCCG CCAGCTCTCCTCCCCCTGGCCGCGTCGCCCCGCCCTCGCCG < 41bp 0.491234724334391 0.753769496505105 0.24226618 0.24028146 prediction 0.507538993010211 Functional Gain - ATG10 ENSG00000152348 UTR5 Human protein_coding chr5:81268069 chr5:81268070 . . 0 22 hm5C_associated_SNPs_107592 0 1 1 0 1 ATG10 chr5:81268125 5'GT 81268125 Upstream 56bp
chr3 183955109 183955109 1 + C T rs843334 183955108 + 183955088 183955128 41 TGTGGAGGCACTGCTGACCCCCCGGGAGATCCCAGCACTCT TGTGGAGGCACTGCTGACCCCTCGGGAGATCCCAGCACTCT < 41bp 0.505648607537603 0.759407096787393 0.18504882 0.09701982 prediction 0.50751697849958 Functional Gain - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183955108 chr3:183955109 synonymous SNV . 0 22 hm5C_associated_SNPs_107593 0 0 0 0 2 VWA5B2 chr3:183955014 3'AG 183955014 Downstream 96bp
chr3 183955109 183955109 1 + C T rs843334 183955108 + 183955088 183955128 41 TGTGGAGGCACTGCTGACCCCCCGGGAGATCCCAGCACTCT TGTGGAGGCACTGCTGACCCCTCGGGAGATCCCAGCACTCT < 41bp 0.505648607537603 0.759407096787393 0.18504882 0.09701982 prediction 0.50751697849958 Functional Gain - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183955108 chr3:183955109 synonymous SNV . 0 22 hm5C_associated_SNPs_107593 0 0 0 0 2 VWA5B2 chr3:183955199 5'GT 183955199 Upstream 91bp
chrX 37665661 37665661 1 + C A LUAD 37665660 + 37665640 37665680 41 ATCTACTTCTACTGGCTGTGCCGGGACACACATGCCTTTGA ATCTACTTCTACTGGCTGTGCAGGGACACACATGCCTTTGA < 41bp 0.500209973956306 0.753945728763951 0.56391966 0.8742832 prediction 0.507471509615291 Functional Gain - CYBB ENSG00000165168 CDS Human protein_coding chrX:37665660 chrX:37665661 synonymous SNV . 0 22 hm5C_associated_SNPs_107597 0 0 0 0 1 CYBB chrX:37665640 3'AG 37665640 Downstream 22bp
chr4 38869387 38869387 1 + C G rs543856924 38869386 + 38869366 38869406 41 CCCGCCCTCCGGCCGCGTCCCCGCCGGCCCTGCAGACGTGG CCCGCCCTCCGGCCGCGTCCCGGCCGGCCCTGCAGACGTGG < 41bp 0.573608965203361 0.827310750413752 0.5100152 0.8629746 prediction 0.507403570420784 Functional Gain - FAM114A1 ENSG00000197712 UTR5 Human protein_coding chr4:38869386 chr4:38869387 . . 0 22 hm5C_associated_SNPs_107600 0 0 0 0 1 FAM114A1 chr4:38869455 5'GT 38869455 Upstream 69bp
chr11 3819156 3819156 1 + C G UCEC 3819155 + 3819135 3819175 41 CCGCCCCCTTCCTTGGAGCGCCGCGACTCGGGCTGAGGGAG CCGCCCCCTTCCTTGGAGCGCGGCGACTCGGGCTGAGGGAG < 41bp 0.473687455613969 0.75369901128827 0.68810594 0.92666346 prediction 0.50739802257654 Functional Gain - PGAP2 ENSG00000148985 CDS Human protein_coding chr11:3819155 chr11:3819156 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_107601 0 0 0 0 1 PGAP2 chr11:3819212 5'GT 3819212 Upstream 57bp
chr18 47101752 47101752 1 + C G SKCM 47101751 + 47101731 47101771 41 TGCTGCAGGTTTGGATCCTGCCGGGCCCATGTTTGAAGGGG TGCTGCAGGTTTGGATCCTGCGGGGCCCATGTTTGAAGGGG < 41bp 0.606820589801748 0.860519135944865 0.31751668 0.8795395 prediction 0.507397092286234 Functional Gain - LIPG ENSG00000101670 CDS Human protein_coding chr18:47101751 chr18:47101752 synonymous SNV . 0 22 hm5C_associated_SNPs_107602 0 0 0 0 1 LIPG chr18:47101739 3'AG 47101739 Downstream 14bp
chrX 150907049 150907049 1 + C A LUAD 150907048 + 150907028 150907068 41 AAGGCCAATGGCAAAGATGACCACAGGACAAGCAGCAGGTG AAGGCCAATGGCAAAGATGACAACAGGACAAGCAGCAGGTG < 41bp 0.526439533855964 0.780092872747992 0.020691544 0.01703155 prediction 0.507306677784057 Functional Gain - CNGA2 ENSG00000183862 CDS Human protein_coding chrX:150907048 chrX:150907049 nonsynonymous SNV 0.769 1 22 hm5C_associated_SNPs_107606 0 0 0 0 1 CNGA2 chrX:150907065 5'GT 150907065 Upstream 17bp
chr12 109522791 109522791 1 + T A SARC 109522787 + 109522767 109522807 41 AGCCAGGGGCCCCCAAAACACAGATTTTTATGAATGGCGCC AGCCAGGGGCCCCCAAAACACAGAATTTTATGAATGGCGCC < 41bp 0.605988301550073 0.859633535913353 0.4962529 0.32666934 prediction 0.50729046872656 Functional Gain - USP30 ENSG00000135093 CDS Human protein_coding chr12:109522787 chr12:109522791 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_107607 0 0 1 0 2 USP30 chr12:109522758 3'AG 109522758 Downstream 34bp
chr12 109522791 109522791 1 + T A SARC 109522787 + 109522767 109522807 41 AGCCAGGGGCCCCCAAAACACAGATTTTTATGAATGGCGCC AGCCAGGGGCCCCCAAAACACAGAATTTTATGAATGGCGCC < 41bp 0.605988301550073 0.859633535913353 0.4962529 0.32666934 prediction 0.50729046872656 Functional Gain - USP30 ENSG00000135093 CDS Human protein_coding chr12:109522787 chr12:109522791 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_107607 0 0 1 0 2 USP30 chr12:109522878 5'GT 109522878 Upstream 88bp
chr2 219269089 219269089 1 + C G rs199987970 219269085 + 219269065 219269105 41 CACGACCTCCTCCCCTTCTTCGAGCAACTCAGCCGTGTGGA CACGACCTCCTCCCCTTCTTCGAGGAACTCAGCCGTGTGGA < 41bp 0.470690628105462 0.753637847318907 0.8633382 0.9285774 prediction 0.507275694637814 Functional Gain - CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219269085 chr2:219269089 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_107608 0 0 1 0 1 CTDSP1 chr2:219269020 3'AG 219269020 Downstream 70bp
chr9 117038046 117038046 1 + C G rs143724625 117038045 + 117038025 117038065 41 CCCCCTGGCGTCACTGGTGTCCGGGTGAGTGTGCAGGCCCC CCCCCTGGCGTCACTGGTGTCGGGGTGAGTGTGCAGGCCCC < 41bp 0.574049636597618 0.827679166766675 0.90967417 0.9309793 prediction 0.507259060338112 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117038045 chr9:117038046 nonsynonymous SNV 0.989 0 22 hm5C_associated_SNPs_107610 0 0 1 0 1 COL27A1 chr9:117038048 5'GT 117038048 Upstream 3bp
chr12 121670288 121670288 1 + T G UCEC 121670286 + 121670266 121670306 41 ATCAAGGCCTATGGCATCCGCTTCGACATCATTGTGTTTGG ATCAAGGCCTATGGCATCCGCTGCGACATCATTGTGTTTGG < 41bp 0.410072383498034 0.753614297920352 0.13249889 0.1139299 prediction 0.507228595840705 Functional Gain - P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121670286 chr12:121670288 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_107613 0 0 0 0 2 P2RX4 chr12:121670217 3'AG 121670217 Downstream 72bp
chr12 121670288 121670288 1 + T G UCEC 121670286 + 121670266 121670306 41 ATCAAGGCCTATGGCATCCGCTTCGACATCATTGTGTTTGG ATCAAGGCCTATGGCATCCGCTGCGACATCATTGTGTTTGG < 41bp 0.410072383498034 0.753614297920352 0.13249889 0.1139299 prediction 0.507228595840705 Functional Gain - P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121670286 chr12:121670288 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_107613 0 0 0 0 2 P2RX4 chr12:121670310 5'GT 121670310 Upstream 23bp
chr22 44581720 44581720 1 + C T GBM 44581719 + 44581699 44581739 41 AAATACCTGCCACCCACTTCCCGGAAGGACCCCAAATTTGA AAATACCTGCCACCCACTTCCTGGAAGGACCCCAAATTTGA < 41bp 0.51182718110474 0.765439905436202 0.24511275 0.113740385 prediction 0.507225448662925 Functional Gain - PARVG ENSG00000138964 CDS Human protein_coding chr22:44581719 chr22:44581720 nonsynonymous SNV 0.416 2 22 hm5C_associated_SNPs_107614 0 0 0 0 2 PARVG chr22:44581688 3'AG 44581688 Downstream 33bp
chr22 44581720 44581720 1 + C T GBM 44581719 + 44581699 44581739 41 AAATACCTGCCACCCACTTCCCGGAAGGACCCCAAATTTGA AAATACCTGCCACCCACTTCCTGGAAGGACCCCAAATTTGA < 41bp 0.51182718110474 0.765439905436202 0.24511275 0.113740385 prediction 0.507225448662925 Functional Gain - PARVG ENSG00000138964 CDS Human protein_coding chr22:44581719 chr22:44581720 nonsynonymous SNV 0.416 2 22 hm5C_associated_SNPs_107614 0 0 0 0 2 PARVG chr22:44581752 5'GT 44581752 Upstream 33bp
chr1 26527516 26527516 1 + C G BLCA 26527515 + 26527495 26527535 41 CTGAGGCAGTACAAGGAGATCCGAGATGAACTCAACATGTA CTGAGGCAGTACAAGGAGATCGGAGATGAACTCAACATGTA < 41bp 0.437398304341438 0.753607064304563 0.5083029 0.83118623 prediction 0.507214128609127 Functional Gain - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26527515 chr1:26527516 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_107617 0 0 0 0 2 CATSPER4 chr1:26527532 5'GT 26527532 Upstream 17bp
chr1 26527516 26527516 1 + C G BLCA 26527515 + 26527495 26527535 41 CTGAGGCAGTACAAGGAGATCCGAGATGAACTCAACATGTA CTGAGGCAGTACAAGGAGATCGGAGATGAACTCAACATGTA < 41bp 0.437398304341438 0.753607064304563 0.5083029 0.83118623 prediction 0.507214128609127 Functional Gain - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26527515 chr1:26527516 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_107617 0 0 0 0 2 CATSPER4 chr1:26527566 5'GT 26527566 Upstream 51bp
chr20 35507522 35507522 1 + C A CESC 35507521 + 35507501 35507541 41 ACGTCAAGGGACGGTTTCAGCCTGCAGAGCCTGTACCGGCG ACGTCAAGGGACGGTTTCAGCATGCAGAGCCTGTACCGGCG < 41bp 0.501642759947067 0.755246676063806 0.14085749 0.2210128 prediction 0.507207832233479 Functional Gain - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35507521 chr20:35507522 nonsynonymous SNV 0.968 4 22 hm5C_associated_SNPs_107619 0 0 0 0 2 TLDC2 chr20:35507444 3'AG 35507444 Downstream 79bp
chr20 35507522 35507522 1 + C A CESC 35507521 + 35507501 35507541 41 ACGTCAAGGGACGGTTTCAGCCTGCAGAGCCTGTACCGGCG ACGTCAAGGGACGGTTTCAGCATGCAGAGCCTGTACCGGCG < 41bp 0.501642759947067 0.755246676063806 0.14085749 0.2210128 prediction 0.507207832233479 Functional Gain - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35507521 chr20:35507522 nonsynonymous SNV 0.968 4 22 hm5C_associated_SNPs_107619 0 0 0 0 2 TLDC2 chr20:35507596 5'GT 35507596 Upstream 75bp
chr2 27730568 27730568 1 + C T HNSC 27730567 + 27730547 27730587 41 GGGTCCCCAGTTCACCTTCTCCCAGGAGGACTTCCTGACTT GGGTCCCCAGTTCACCTTCTCTCAGGAGGACTTCCTGACTT < 41bp 0.500122532879803 0.753721802299318 0.10562989 0.04501432 prediction 0.50719853883903 Functional Gain - GCKR ENSG00000084734 CDS Human protein_coding chr2:27730567 chr2:27730568 synonymous SNV . 0 22 hm5C_associated_SNPs_107620 0 0 1 0 1 GCKR chr2:27730644 5'GT 27730644 Upstream 77bp
chr13 48807588 48807588 1 + C A rs150336652 48807584 + 48807564 48807604 41 GCGAGGAGGCGCTCATCATCCCCCCCGACGCCGTCGCGGTG GCGAGGAGGCGCTCATCATCCCCCACGACGCCGTCGCGGTG < 41bp 0.665025569699507 0.918618028072081 0.063584715 0.05923882 prediction 0.507184916745148 Functional Gain - ITM2B ENSG00000136156 CDS Human protein_coding chr13:48807584 chr13:48807588 nonsynonymous SNV 0.975 0 25 hm5C_associated_SNPs_107621 0 0 1 0 1 ITM2B chr13:48807613 5'GT 48807613 Upstream 26bp
chr3 49042542 49042542 1 + C G UCEC 49042538 + 49042518 49042558 41 GACCAGGAACACCCATGACACAGGCACAGCCCTGCACTGTG GACCAGGAACACCCATGACACAGGGACAGCCCTGCACTGTG < 41bp 0.583744652289587 0.837331351306254 0.27042687 0.8966975 prediction 0.507173398033334 Functional Gain - P4HTM ENSG00000178467 CDS Human protein_coding chr3:49042538 chr3:49042542 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_107623 0 0 0 0 1 P4HTM chr3:49042603 5'GT 49042603 Upstream 62bp
chr3 47374728 47374728 1 + C T LAML 47374727 + 47374707 47374747 41 CCTGAGCTGCTGTCCAATATCCGCCTGCCCCTCTGTCGGCC CCTGAGCTGCTGTCCAATATCTGCCTGCCCCTCTGTCGGCC < 41bp 0.520315887543769 0.773901976656938 0.5003243 0.19679826 prediction 0.507172178226337 Functional Gain - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47374727 chr3:47374728 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_107624 0 0 1 0 2 KLHL18 chr3:47374647 3'AG 47374647 Downstream 82bp
chr3 47374728 47374728 1 + C T LAML 47374727 + 47374707 47374747 41 CCTGAGCTGCTGTCCAATATCCGCCTGCCCCTCTGTCGGCC CCTGAGCTGCTGTCCAATATCTGCCTGCCCCTCTGTCGGCC < 41bp 0.520315887543769 0.773901976656938 0.5003243 0.19679826 prediction 0.507172178226337 Functional Gain - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47374727 chr3:47374728 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_107624 0 0 1 0 2 KLHL18 chr3:47374807 5'GT 47374807 Upstream 80bp
chr14 75200809 75200809 1 + C A SKCM 75200808 + 75200788 75200828 41 TACATTGTGGCCACAGTTGACCGGGACCTGAAAAGAAGAAT TACATTGTGGCCACAGTTGACAGGGACCTGAAAAGAAGAAT < 41bp 0.500139515092059 0.753720843724056 0.42958438 0.780097 prediction 0.507162657263995 Functional Gain - FCF1 ENSG00000119616 CDS Human protein_coding chr14:75200808 chr14:75200809 synonymous SNV . 0 22 hm5C_associated_SNPs_107625 0 0 1 0 2 FCF1 chr14:75200779 3'AG 75200779 Downstream 31bp
chr14 75200809 75200809 1 + C A SKCM 75200808 + 75200788 75200828 41 TACATTGTGGCCACAGTTGACCGGGACCTGAAAAGAAGAAT TACATTGTGGCCACAGTTGACAGGGACCTGAAAAGAAGAAT < 41bp 0.500139515092059 0.753720843724056 0.42958438 0.780097 prediction 0.507162657263995 Functional Gain - FCF1 ENSG00000119616 CDS Human protein_coding chr14:75200808 chr14:75200809 synonymous SNV . 0 22 hm5C_associated_SNPs_107625 0 0 1 0 2 FCF1 chr14:75200873 5'GT 75200873 Upstream 65bp
chr5 157181082 157181082 1 + T G PRAD 157181079 + 157181059 157181099 41 AGCATATGAACGGGATTCTTCACTGACTCTCACTAGGGTAG AGCATATGAACGGGATTCTTCACGGACTCTCACTAGGGTAG < 41bp 0.354963210016323 0.753576471196267 0.10095003 0.42616907 prediction 0.507152942392534 Functional Gain - LSM11 ENSG00000155858 CDS Human protein_coding chr5:157181079 chr5:157181082 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_107626 0 0 1 0 1 LSM11 chr5:157181012 3'AG 157181012 Downstream 71bp
chr1 160385688 160385688 1 + C T LGG 160385687 + 160385667 160385707 41 TCGGGCCACTCCCGCAGCTCCCGCAAGCACAGGTGGGCAGG TCGGGCCACTCCCGCAGCTCCTGCAAGCACAGGTGGGCAGG < 41bp 0.504002136805695 0.75757815598346 0.41458008 0.54363495 prediction 0.507152038355529 Functional Gain - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160385687 chr1:160385688 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_107627 0 0 0 0 1 VANGL2 chr1:160385698 5'GT 160385698 Upstream 11bp
chr1 84878181 84878181 1 + C A LUAD 84878180 + 84878160 84878200 41 CTCACCACACTTCAGTCGGCCCAGGGACAAAAATTCCTCCA CTCACCACACTTCAGTCGGCCAAGGGACAAAAATTCCTCCA < 41bp 0.516073680870771 0.769648036023985 0.3025722 0.31477052 prediction 0.507148710306428 Functional Gain - DNASE2B ENSG00000137976 CDS Human protein_coding chr1:84878180 chr1:84878181 nonsynonymous SNV 0.937 0 22 hm5C_associated_SNPs_107630 0 0 0 0 1 DNASE2B chr1:84878229 5'GT 84878229 Upstream 49bp
chr1 26607289 26607289 1 + C A PAAD 26607288 + 26607268 26607308 41 CAGAGCGAGGTGACCCGAATCCTGGATGGGAAGCGCATCCA CAGAGCGAGGTGACCCGAATCATGGATGGGAAGCGCATCCA < 41bp 0.498554547545853 0.753548566641759 0.3417177 0.65394497 prediction 0.507097133283518 Functional Gain - SH3BGRL3 ENSG00000142669 CDS Human protein_coding chr1:26607288 chr1:26607289 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_107633 0 0 1 0 1 SH3BGRL3 chr1:26607256 3'AG 26607256 Downstream 34bp
chr19 40149108 40149108 1 + C A LUAD 40149107 + 40149087 40149127 41 GCTTTGCCCTCAGCAACGAACCACAGCTGCAGGTGGATTTC GCTTTGCCCTCAGCAACGAACAACAGCTGCAGGTGGATTTC < 41bp 0.498515251738932 0.753518623058116 0.05413142 0.35633755 prediction 0.507037246116233 Functional Gain - LGALS16 ENSG00000249861 CDS Human protein_coding chr19:40149107 chr19:40149108 nonsynonymous SNV 0.007 3 22 hm5C_associated_SNPs_107640 0 0 0 0 1 LGALS16 chr19:40149100 3'AG 40149100 Downstream 9bp
chr6 106552753 106552753 1 + C A GBM 106552749 + 106552729 106552769 41 AGCACTGAGAAAAATGAACTCTGCCCAAAGAATGTCCCAAA AGCACTGAGAAAAATGAACTCTGCACAAAGAATGTCCCAAA < 41bp 0.326137258452093 0.753504304764184 0.022088587 0.032888055 prediction 0.507008609528368 Functional Gain - PRDM1 ENSG00000057657 CDS Human protein_coding chr6:106552749 chr6:106552753 nonsynonymous SNV 0.983 1 25 hm5C_associated_SNPs_107641 0 0 0 0 1 PRDM1 chr6:106552700 3'AG 106552700 Downstream 54bp
chr6 148664346 148664346 1 + T C UCEC 148664344 + 148664324 148664364 41 TTCTCCCGACTCTGGACCGACGTGATGGGTATCCTGGTAAG TTCTCCCGACTCTGGACCGACGCGATGGGTATCCTGGTAAG < 41bp 0.52204722959865 0.775546847704514 0.7862503 0.47829747 prediction 0.506999236211727 Functional Gain - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148664344 chr6:148664346 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_107642 0 0 0 0 1 SASH1 chr6:148664359 5'GT 148664359 Upstream 14bp
chr3 10102063 10102063 1 + T C LIHC 10102061 + 10102041 10102081 41 GGGATTATTGGTGCTGTGACCATGGCTGGCATCATGGCGGC GGGATTATTGGTGCTGTGACCACGGCTGGCATCATGGCGGC < 41bp 0.540095072667426 0.79359387487835 0.69337034 0.82260877 prediction 0.506997604421849 Functional Gain - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10102061 chr3:10102063 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_107643 0 0 1 0 2 FANCD2 chr3:10101978 3'AG 10101978 Downstream 86bp
chr3 10102063 10102063 1 + T C LIHC 10102061 + 10102041 10102081 41 GGGATTATTGGTGCTGTGACCATGGCTGGCATCATGGCGGC GGGATTATTGGTGCTGTGACCACGGCTGGCATCATGGCGGC < 41bp 0.540095072667426 0.79359387487835 0.69337034 0.82260877 prediction 0.506997604421849 Functional Gain - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10102061 chr3:10102063 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_107643 0 0 1 0 2 FANCD2 chr3:10102087 5'GT 10102087 Upstream 25bp
chr2 98996706 98996706 1 + C A rs114108462 98996705 + 98996685 98996725 41 TGCACCACCAGGACCAGGGACCGGACTCTTTTCCTGATCGT TGCACCACCAGGACCAGGGACAGGACTCTTTTCCTGATCGT < 41bp 0.519781216623137 0.773275444759499 0.3926075 0.43064278 prediction 0.506988456272723 Functional Gain - CNGA3 ENSG00000144191 CDS Human protein_coding chr2:98996705 chr2:98996706 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_107645 0 0 0 0 1 CNGA3 chr2:98996638 3'AG 98996638 Downstream 69bp
chr19 51981876 51981876 1 + C A UCEC 51981875 + 51981855 51981895 41 TCTCTGGAGGGACCCCTCCTCCTGGAGGACCCCAGGCAGCT TCTCTGGAGGGACCCCTCCTCATGGAGGACCCCAGGCAGCT < 41bp 0.52330133653081 0.776795015897125 0.26282486 0.7730892 prediction 0.50698735873263 Functional Gain - CEACAM18 ENSG00000213822 CDS Human protein_coding chr19:51981875 chr19:51981876 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_107646 0 0 0 0 1 CEACAM18 chr19:51981948 5'GT 51981948 Upstream 73bp
chr11 73007592 73007592 1 + C G PRAD 73007588 + 73007568 73007608 41 AATGGGACAATGGCACAGGCCAGGCTCTGGGCTTGCCACCC AATGGGACAATGGCACAGGCCAGGGTCTGGGCTTGCCACCC < 41bp 0.589928550304919 0.843418908846478 0.39591056 0.90173954 prediction 0.50698071708312 Functional Gain - P2RY6 ENSG00000171631 CDS Human protein_coding chr11:73007588 chr11:73007592 nonsynonymous SNV 0.982 0 25 hm5C_associated_SNPs_107647 0 0 0 0 1 P2RY6 chr11:73007530 3'AG 73007530 Downstream 63bp
chr16 24046832 24046832 1 + C G rs199648786 24046831 + 24046811 24046851 41 CGCCGCGGCCGCATCTACATCCAGGCCCACATCGACAGGGA CGCCGCGGCCGCATCTACATCGAGGCCCACATCGACAGGGA < 41bp 0.449720545552194 0.753465224575645 0.448929 0.91691315 prediction 0.50693044915129 Functional Gain - PRKCB ENSG00000166501 CDS Human protein_coding chr16:24046831 chr16:24046832 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_107650 0 0 1 0 2 PRKCB chr16:24046740 3'AG 24046740 Downstream 93bp
chr16 24046832 24046832 1 + C G rs199648786 24046831 + 24046811 24046851 41 CGCCGCGGCCGCATCTACATCCAGGCCCACATCGACAGGGA CGCCGCGGCCGCATCTACATCGAGGCCCACATCGACAGGGA < 41bp 0.449720545552194 0.753465224575645 0.448929 0.91691315 prediction 0.50693044915129 Functional Gain - PRKCB ENSG00000166501 CDS Human protein_coding chr16:24046831 chr16:24046832 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_107650 0 0 1 0 2 PRKCB chr16:24046868 5'GT 24046868 Upstream 37bp
chr11 118277757 118277757 1 + T C LIHC 118277755 + 118277735 118277775 41 ATCCCTAGAGCTATTCAGAGCCTGAAAAAAATAGTCAATAG ATCCCTAGAGCTATTCAGAGCCCGAAAAAAATAGTCAATAG < 41bp 0.531689658825758 0.785153610188366 0.10356775 0.15190518 prediction 0.506927902725216 Functional Gain - ATP5L ENSG00000167283 CDS Human protein_coding chr11:118277755 chr11:118277757 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_107651 0 0 1 0 1 ATP5L chr11:118277812 5'GT 118277812 Upstream 56bp
chr21 47706297 47706297 1 + C A rs2298699 47706293 + 47706273 47706313 41 GGCTTCCGGTCGGGAGGGTCCGCCCGCTCTCGCGTCCTTTG GGCTTCCGGTCGGGAGGGTCCGCCAGCTCTCGCGTCCTTTG < 41bp 0.639527634261497 0.892980968128196 0.26264238 0.71091783 prediction 0.506906667733397 Functional Gain - YBEY ENSG00000182362 UTR5 Human protein_coding chr21:47706293 chr21:47706297 . . 0 25 hm5C_associated_SNPs_107652 0 0 1 0 1 YBEY chr21:47706329 5'GT 47706329 Upstream 33bp
chr1 247582313 247582313 1 + T A LUSC 247582309 + 247582289 247582329 41 GAGAAGGCGTGGGCCATGGCCGTGTGGATCTTCGCTGCGAT GAGAAGGCGTGGGCCATGGCCGTGAGGATCTTCGCTGCGAT < 41bp 0.454940432818302 0.753427102218134 0.4452244 0.41146755 prediction 0.506854204436268 Functional Gain - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247582309 chr1:247582313 nonsynonymous SNV 0.960 0 25 hm5C_associated_SNPs_107655 0 0 0 0 1 NLRP3 chr1:247582379 5'GT 247582379 Upstream 67bp
chr11 93088587 93088587 1 + T C HNSC 93088585 + 93088565 93088605 41 GAATTAATGGAACAAATTGACATCATGGTAAGCAACAAGAA GAATTAATGGAACAAATTGACACCATGGTAAGCAACAAGAA < 41bp 0.56983466535994 0.82325530452755 0.042580605 0.017453074 prediction 0.506841278335219 Functional Gain - DEUP1 ENSG00000165325 CDS Human protein_coding chr11:93088585 chr11:93088587 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_107657 0 0 0 0 1 DEUP1 chr11:93088537 3'AG 93088537 Downstream 51bp
chr2 71591136 71591136 1 + C T SKCM 71591135 + 71591115 71591155 41 CCACGAAGACGTTCTCATTCCCCCAGTCCTAGGCGTTCTAG CCACGAAGACGTTCTCATTCCTCCAGTCCTAGGCGTTCTAG < 41bp 0.511562675502413 0.76497912449415 0.14975688 0.93489635 prediction 0.506832897983473 Functional Gain - ZNF638 ENSG00000075292 CDS Human protein_coding chr2:71591135 chr2:71591136 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_107659 0 0 1 0 1 ZNF638 chr2:71591084 3'AG 71591084 Downstream 53bp
chrX 69500109 69500109 1 + C A UCEC 69500108 + 69500088 69500128 41 TCCTACAAAGTCAGAGTCAACCTGATGGTGTCCTGTGGTGG TCCTACAAAGTCAGAGTCAACATGATGGTGTCCTGTGGTGG < 41bp 0.490375777904554 0.753415800472849 0.21246725 0.16418603 prediction 0.506831600945698 Functional Gain - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69500108 chrX:69500109 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_107660 0 0 0 0 2 ARR3 chrX:69500045 3'AG 69500045 Downstream 65bp
chrX 69500109 69500109 1 + C A UCEC 69500108 + 69500088 69500128 41 TCCTACAAAGTCAGAGTCAACCTGATGGTGTCCTGTGGTGG TCCTACAAAGTCAGAGTCAACATGATGGTGTCCTGTGGTGG < 41bp 0.490375777904554 0.753415800472849 0.21246725 0.16418603 prediction 0.506831600945698 Functional Gain - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69500108 chrX:69500109 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_107660 0 0 0 0 2 ARR3 chrX:69500128 5'GT 69500128 Upstream 20bp
chr3 9971783 9971783 1 + T G COAD 9971780 + 9971760 9971800 41 GCCCCCAGGACAACAGATCCCTCTGTGCCTTGGAACCCAGT GCCCCCAGGACAACAGATCCCTCGGTGCCTTGGAACCCAGT < 41bp 0.389803516790284 0.753414846387412 0.15031439 0.49972078 prediction 0.506829692774823 Functional Gain - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9971780 chr3:9971783 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_107661 0 0 0 0 2 IL17RC chr3:9971712 3'AG 9971712 Downstream 72bp
chr3 9971783 9971783 1 + T G COAD 9971780 + 9971760 9971800 41 GCCCCCAGGACAACAGATCCCTCTGTGCCTTGGAACCCAGT GCCCCCAGGACAACAGATCCCTCGGTGCCTTGGAACCCAGT < 41bp 0.389803516790284 0.753414846387412 0.15031439 0.49972078 prediction 0.506829692774823 Functional Gain - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9971780 chr3:9971783 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_107661 0 0 0 0 2 IL17RC chr3:9971833 5'GT 9971833 Upstream 51bp
chr11 120198227 120198227 1 + T C UCEC 120198225 + 120198205 120198245 41 CTCTATATTTCTTTCTGCCACCTGAATAAGCACCGAAGCTA CTCTATATTTCTTTCTGCCACCCGAATAAGCACCGAAGCTA < 41bp 0.519223259374398 0.772635206175326 0.35246557 0.20896208 prediction 0.506823893601857 Functional Gain - TMEM136 ENSG00000181264 CDS Human protein_coding chr11:120198225 chr11:120198227 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_107663 0 0 0 0 3 TMEM136 chr11:120198150 3'AG 120198150 Downstream 78bp
chr11 120198227 120198227 1 + T C UCEC 120198225 + 120198205 120198245 41 CTCTATATTTCTTTCTGCCACCTGAATAAGCACCGAAGCTA CTCTATATTTCTTTCTGCCACCCGAATAAGCACCGAAGCTA < 41bp 0.519223259374398 0.772635206175326 0.35246557 0.20896208 prediction 0.506823893601857 Functional Gain - TMEM136 ENSG00000181264 CDS Human protein_coding chr11:120198225 chr11:120198227 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_107663 0 0 0 0 3 TMEM136 chr11:120198161 3'AG 120198161 Downstream 67bp
chr11 120198227 120198227 1 + T C UCEC 120198225 + 120198205 120198245 41 CTCTATATTTCTTTCTGCCACCTGAATAAGCACCGAAGCTA CTCTATATTTCTTTCTGCCACCCGAATAAGCACCGAAGCTA < 41bp 0.519223259374398 0.772635206175326 0.35246557 0.20896208 prediction 0.506823893601857 Functional Gain - TMEM136 ENSG00000181264 CDS Human protein_coding chr11:120198225 chr11:120198227 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_107663 0 0 0 0 3 TMEM136 chr11:120198175 3'AG 120198175 Downstream 53bp
chr16 70497604 70497604 1 + T A HNSC 70497600 + 70497580 70497620 41 CCGTGGAGGACCCAGAGAAGCGTGTGGGCAGCGGAGGAGCC CCGTGGAGGACCCAGAGAAGCGTGAGGGCAGCGGAGGAGCC < 41bp 0.445582734607489 0.753407825365856 0.3913834 0.49638203 prediction 0.506815650731712 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70497600 chr16:70497604 nonsynonymous SNV 0.785 4 25 hm5C_associated_SNPs_107664 0 0 1 0 2 FUK chr16:70497526 3'AG 70497526 Downstream 79bp
chr16 70497604 70497604 1 + T A HNSC 70497600 + 70497580 70497620 41 CCGTGGAGGACCCAGAGAAGCGTGTGGGCAGCGGAGGAGCC CCGTGGAGGACCCAGAGAAGCGTGAGGGCAGCGGAGGAGCC < 41bp 0.445582734607489 0.753407825365856 0.3913834 0.49638203 prediction 0.506815650731712 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70497600 chr16:70497604 nonsynonymous SNV 0.785 4 25 hm5C_associated_SNPs_107664 0 0 1 0 2 FUK chr16:70497677 5'GT 70497677 Upstream 74bp
chr10 71851564 71851564 1 + C T STAD 71851563 + 71851543 71851583 41 GGCGTCCTGCCCAGAATTCACCCCGAACTGCTGGCCAAAAA GGCGTCCTGCCCAGAATTCACTCCGAACTGCTGGCCAAAAA < 41bp 0.540443750915112 0.793850075863935 0.37181115 0.47239938 prediction 0.506812649897646 Functional Gain - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71851563 chr10:71851564 nonsynonymous SNV 0.986 1 22 hm5C_associated_SNPs_107665 0 0 0 1 1 H2AFY2 chr10:71851513 3'AG 71851513 Downstream 52bp
chr19 52856992 52856992 1 + C G rs115821660 52856991 + 52856971 52857011 41 TCTCAGGAGGAGTGGAAATCCCTGGACCCTGGACAGAGGGC TCTCAGGAGGAGTGGAAATCCGTGGACCCTGGACAGAGGGC < 41bp 0.446748321275549 0.753399283439901 0.15425545 0.32975212 prediction 0.506798566879803 Functional Gain - ZNF610 ENSG00000167554 CDS Human protein_coding chr19:52856991 chr19:52856992 nonsynonymous SNV 0.024 3 22 hm5C_associated_SNPs_107666 0 0 0 0 2 ZNF610 chr19:52856935 3'AG 52856935 Downstream 58bp
chr19 52856992 52856992 1 + C G rs115821660 52856991 + 52856971 52857011 41 TCTCAGGAGGAGTGGAAATCCCTGGACCCTGGACAGAGGGC TCTCAGGAGGAGTGGAAATCCGTGGACCCTGGACAGAGGGC < 41bp 0.446748321275549 0.753399283439901 0.15425545 0.32975212 prediction 0.506798566879803 Functional Gain - ZNF610 ENSG00000167554 CDS Human protein_coding chr19:52856991 chr19:52856992 nonsynonymous SNV 0.024 3 22 hm5C_associated_SNPs_107666 0 0 0 0 2 ZNF610 chr19:52857061 5'GT 52857061 Upstream 70bp
chr7 66415947 66415947 1 + C T COAD 66415946 + 66415926 66415966 41 TCTTCTCCTGCAGACAGCCACCGCACTGTGTTCCTGACACG TCTTCTCCTGCAGACAGCCACTGCACTGTGTTCCTGACACG < 41bp 0.504877200855131 0.758276234819376 0.08570266 0.17921144 prediction 0.50679806792849 Functional Gain - TMEM248 ENSG00000106609 CDS Human protein_coding chr7:66415946 chr7:66415947 nonsynonymous SNV 0.915 1 22 hm5C_associated_SNPs_107667 0 0 1 0 1 TMEM248 chr7:66415939 3'AG 66415939 Downstream 9bp
chr16 28847336 28847336 1 + C G COAD 28847332 + 28847312 28847352 41 CGCCCCAGGTGATGCTGCTGCACCCACCCCAGAGTCATGGG CGCCCCAGGTGATGCTGCTGCACCGACCCCAGAGTCATGGG < 41bp 0.52678535980436 0.780178682009484 0.10673219 0.1251617 prediction 0.506786644410248 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28847332 chr16:28847336 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_107669 0 0 1 0 1 ATXN2L chr16:28847254 3'AG 28847254 Downstream 83bp
chr3 127325478 127325478 1 + C A KIRC 127325477 + 127325457 127325497 41 CTGCATCTGAACCAGCTGATCCGCACCAGTGGGGTGGTGAC CTGCATCTGAACCAGCTGATCAGCACCAGTGGGGTGGTGAC < 41bp 0.507564210971191 0.760944476486393 0.36490038 0.8627258 prediction 0.506760531030404 Functional Gain - MCM2 ENSG00000073111 CDS Human protein_coding chr3:127325477 chr3:127325478 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_107670 0 0 1 0 1 MCM2 chr3:127325453 3'AG 127325453 Downstream 26bp
chr13 101707741 101707741 1 + T C UCEC 101707739 + 101707719 101707759 41 TTCAGAACCGCAGGAAGCCGCGTCAGTCATGGGGTTCATTT TTCAGAACCGCAGGAAGCCGCGCCAGTCATGGGGTTCATTT < 41bp 0.476202954562233 0.75336652683825 0.15505993 0.27658522 prediction 0.506733053676501 Functional Gain - NALCN ENSG00000102452 CDS Human protein_coding chr13:101707739 chr13:101707741 nonsynonymous SNV 0.743 2 23 hm5C_associated_SNPs_107671 0 0 0 0 1 NALCN chr13:101707798 5'GT 101707798 Upstream 58bp
chr13 77566320 77566320 1 + C G rs138037471 77566319 + 77566299 77566339 41 ACGCGCTTCCTGGTGCTGGGCCCTGGCGCTGCTTTGGCTCG ACGCGCTTCCTGGTGCTGGGCGCTGGCGCTGCTTTGGCTCG < 41bp 0.461681948787391 0.753337184162327 0.2196314 0.3342575 prediction 0.506674368324654 Functional Gain - CLN5 ENSG00000102805 CDS Human protein_coding chr13:77566319 chr13:77566320 synonymous SNV . 0 22 hm5C_associated_SNPs_107676 3 0 1 0 1 CLN5 chr13:77566406 5'GT 77566406 Upstream 87bp
chr1 156314453 156314453 1 + C T SKCM 156314452 + 156314432 156314472 41 TATTAATCTTCAAGCAAGTTCCCCACCAGCCACTTTTCTGA TATTAATCTTCAAGCAAGTTCTCCACCAGCCACTTTTCTGA < 41bp 0.479185901749831 0.7533274223481 0.01273188 0.9357793 prediction 0.5066548446962 Functional Gain - TSACC ENSG00000163467 CDS Human protein_coding chr1:156314452 chr1:156314453 synonymous SNV . 0 22 hm5C_associated_SNPs_107679 0 0 0 0 2 TSACC chr1:156314371 3'AG 156314371 Downstream 83bp
chr1 156314453 156314453 1 + C T SKCM 156314452 + 156314432 156314472 41 TATTAATCTTCAAGCAAGTTCCCCACCAGCCACTTTTCTGA TATTAATCTTCAAGCAAGTTCTCCACCAGCCACTTTTCTGA < 41bp 0.479185901749831 0.7533274223481 0.01273188 0.9357793 prediction 0.5066548446962 Functional Gain - TSACC ENSG00000163467 CDS Human protein_coding chr1:156314452 chr1:156314453 synonymous SNV . 0 22 hm5C_associated_SNPs_107679 0 0 0 0 2 TSACC chr1:156314499 5'GT 156314499 Upstream 47bp
chr1 29606120 29606120 1 + C A rs117122029 29606116 + 29606096 29606136 41 GTTCTCCGTGCGGGCCCGCACAGGCAAAGGCTTCGGCCAGG GTTCTCCGTGCGGGCCCGCACAGGAAAAGGCTTCGGCCAGG < 41bp 0.666976838842342 0.92028020680174 0.43437272 0.76993346 prediction 0.506606735918796 Functional Gain - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29606116 chr1:29606120 synonymous SNV . 0 25 hm5C_associated_SNPs_107681 0 0 0 0 1 PTPRU chr1:29606169 5'GT 29606169 Upstream 50bp
chr19 1036456 1036456 1 + C G rs1064410 1036452 + 1036432 1036472 41 CGCCAGCCAGTCGGGCATGACTGCCTACGGCACGAGAAGGC CGCCAGCCAGTCGGGCATGACTGCGTACGGCACGAGAAGGC < 41bp 0.476392418232304 0.753302838467531 0.28984258 0.4366116 prediction 0.506605676935063 Functional Gain - CNN2 ENSG00000064666 CDS Human protein_coding chr19:1036452 chr19:1036456 synonymous SNV . 0 25 hm5C_associated_SNPs_107682 0 0 1 0 1 CNN2 chr19:1036415 3'AG 1036415 Downstream 42bp
chr19 36027886 36027886 1 + T G UCEC 36027884 + 36027864 36027904 41 GCCCGGGAGCTGACTGTGGGCATCAATGGGTGAGTCTACTC GCCCGGGAGCTGACTGTGGGCAGCAATGGGTGAGTCTACTC < 41bp 0.626520334104808 0.879815265922951 0.17454475 0.37475425 prediction 0.506589863636285 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36027884 chr19:36027886 nonsynonymous SNV 0.880 4 23 hm5C_associated_SNPs_107687 0 0 0 0 1 GAPDHS chr19:36027892 5'GT 36027892 Upstream 7bp
chr20 39729898 39729898 1 + C A SKCM 39729897 + 39729877 39729917 41 GGACATAAGTGGAAAGAAGTCCGGCATGATAACAAGGTTAC GGACATAAGTGGAAAGAAGTCAGGCATGATAACAAGGTTAC < 41bp 0.498519386624208 0.753282701541586 0.41198036 0.50685 prediction 0.506565403083171 Functional Gain - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39729897 chr20:39729898 synonymous SNV . 0 22 hm5C_associated_SNPs_107692 0 0 1 0 2 TOP1 chr20:39729849 3'AG 39729849 Downstream 50bp
chr20 39729898 39729898 1 + C A SKCM 39729897 + 39729877 39729917 41 GGACATAAGTGGAAAGAAGTCCGGCATGATAACAAGGTTAC GGACATAAGTGGAAAGAAGTCAGGCATGATAACAAGGTTAC < 41bp 0.498519386624208 0.753282701541586 0.41198036 0.50685 prediction 0.506565403083171 Functional Gain - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39729897 chr20:39729898 synonymous SNV . 0 22 hm5C_associated_SNPs_107692 0 0 1 0 2 TOP1 chr20:39729993 5'GT 39729993 Upstream 96bp
chr6 398857 398857 1 + T C LUAD 398855 + 398835 398875 41 GGTGACAGGAACCTTTTATGCTTGTGCCCCACCTGAGTCCC GGTGACAGGAACCTTTTATGCTCGTGCCCCACCTGAGTCCC < 41bp 0.477176468916248 0.753274822710587 0.19189504 0.2821737 prediction 0.506549645421173 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:398855 chr6:398857 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_107694 0 0 0 0 2 IRF4 chr6:398828 3'AG 398828 Downstream 30bp
chr6 398857 398857 1 + T C LUAD 398855 + 398835 398875 41 GGTGACAGGAACCTTTTATGCTTGTGCCCCACCTGAGTCCC GGTGACAGGAACCTTTTATGCTCGTGCCCCACCTGAGTCCC < 41bp 0.477176468916248 0.753274822710587 0.19189504 0.2821737 prediction 0.506549645421173 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:398855 chr6:398857 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_107694 0 0 0 0 2 IRF4 chr6:398935 5'GT 398935 Upstream 79bp
chr16 1705975 1705975 1 + T G UCEC 1705972 + 1705952 1705992 41 GTTCCCAGGCGAGAACTGTACACTGACACCGCTGCCGGGCG GTTCCCAGGCGAGAACTGTACACGGACACCGCTGCCGGGCG < 41bp 0.349266645900057 0.753261126021303 0.37464452 0.71490026 prediction 0.506522252042606 Functional Gain - CRAMP1 ENSG00000007545 CDS Human protein_coding chr16:1705972 chr16:1705975 nonsynonymous SNV 0.853 3 24 hm5C_associated_SNPs_107695 0 0 1 0 1 CRAMP1 chr16:1705878 3'AG 1705878 Downstream 98bp
chr16 69184590 69184590 1 + C A UCEC 69184589 + 69184569 69184609 41 GTGCGCACTGTGGCCCACAGCCCAACAGCGCTGATATCTGG GTGCGCACTGTGGCCCACAGCACAACAGCGCTGATATCTGG < 41bp 0.51545742298578 0.768718040522082 0.07573584 0.11341554 prediction 0.506521235072603 Functional Gain - UTP4 ENSG00000141076 CDS Human protein_coding chr16:69184589 chr16:69184590 nonsynonymous SNV 0.817 0 22 hm5C_associated_SNPs_107696 0 0 1 0 1 UTP4 chr16:69184611 5'GT 69184611 Upstream 22bp
chr5 43628327 43628327 1 + T A LUSC 43628323 + 43628303 43628343 41 GCTGCAGCTTTGGAACAGTTCAAGTCTCTTGGTGCTGAGCC GCTGCAGCTTTGGAACAGTTCAAGACTCTTGGTGCTGAGCC < 41bp 0.429744420792076 0.75324949150292 0.40888435 0.6484639 prediction 0.506498983005841 Functional Gain - NNT ENSG00000112992 CDS Human protein_coding chr5:43628323 chr5:43628327 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_107699 0 0 1 0 1 NNT chr5:43628302 3'AG 43628302 Downstream 26bp
chr16 31765100 31765100 1 + T C LIHC 31765098 + 31765078 31765118 41 ATCTTTCAGATATCTTTTCTCATGATACTCAAGGCCTCTTA ATCTTTCAGATATCTTTTCTCACGATACTCAAGGCCTCTTA < 41bp 0.5093919488569 0.76263872859849 0.35150948 0.2709049 prediction 0.50649355948318 Functional Gain - ZNF720 ENSG00000197302 CDS Human protein_coding chr16:31765098 chr16:31765100 synonymous SNV . 0 23 hm5C_associated_SNPs_107701 0 0 1 1 1 ZNF720 chr16:31765087 3'AG 31765087 Downstream 14bp
chr19 55672547 55672547 1 + C A UCEC 55672543 + 55672523 55672563 41 CCAGTACCCGCGCGCTGCCACGCGCTCCCCACGCTGGAAAA CCAGTACCCGCGCGCTGCCACGCGATCCCCACGCTGGAAAA < 41bp 0.659559621453179 0.912802170411097 0.47117278 0.82724583 prediction 0.506485097915835 Functional Gain - DNAAF3 ENSG00000167646 CDS Human antisense chr19:55672543 chr19:55672547 nonsynonymous SNV 0.662 2 25 hm5C_associated_SNPs_107702 0 0 0 0 1 DNAAF3 chr19:55672582 5'GT 55672582 Upstream 36bp
chr8 106456593 106456593 1 + C A LUAD 106456589 + 106456569 106456609 41 GGGGCAACCTGGAGTTGAGACAGACGACTGGGATGGACCAG GGGGCAACCTGGAGTTGAGACAGAAGACTGGGATGGACCAG < 41bp 0.371972472816563 0.753239400454927 0.729598 0.7707784 prediction 0.506478800909854 Functional Gain - ZFPM2 ENSG00000169946 CDS Human protein_coding chr8:106456589 chr8:106456593 nonsynonymous SNV 0.816 0 25 hm5C_associated_SNPs_107703 0 0 1 0 2 ZFPM2 chr8:106456508 3'AG 106456508 Downstream 86bp
chr8 106456593 106456593 1 + C A LUAD 106456589 + 106456569 106456609 41 GGGGCAACCTGGAGTTGAGACAGACGACTGGGATGGACCAG GGGGCAACCTGGAGTTGAGACAGAAGACTGGGATGGACCAG < 41bp 0.371972472816563 0.753239400454927 0.729598 0.7707784 prediction 0.506478800909854 Functional Gain - ZFPM2 ENSG00000169946 CDS Human protein_coding chr8:106456589 chr8:106456593 nonsynonymous SNV 0.816 0 25 hm5C_associated_SNPs_107703 0 0 1 0 2 ZFPM2 chr8:106456609 5'GT 106456609 Upstream 17bp
chr15 45879699 45879699 1 + C A UCEC 45879695 + 45879675 45879715 41 GCCCTGACACGGCCACCCTACTGCCTGGAGGCCGGGGAGCC GCCCTGACACGGCCACCCTACTGCATGGAGGCCGGGGAGCC < 41bp 0.65983935390312 0.913074109218963 0.23323682 0.36366868 prediction 0.506469510631686 Functional Gain - BLOC1S6 ENSG00000104164 CDS Human protein_coding chr15:45879695 chr15:45879699 nonsynonymous SNV 0.053 1 25 hm5C_associated_SNPs_107705 0 0 1 0 1 BLOC1S6 chr15:45879723 5'GT 45879723 Upstream 25bp
chr1 202276000 202276000 1 + C A STAD 202275996 + 202275976 202276016 41 AGCCTCTCTTGCTGCCCTAGCGGCCTCCAACACAACCGCAT AGCCTCTCTTGCTGCCCTAGCGGCATCCAACACAACCGCAT < 41bp 0.347048399910434 0.75321982837392 0.40743378 0.48894802 prediction 0.50643965674784 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202275996 chr1:202276000 nonsynonymous SNV 0.907 4 25 hm5C_associated_SNPs_107710 0 0 0 0 1 LGR6 chr1:202275996 3'AG 202275996 Downstream 5bp
chr22 44322843 44322843 1 + T C rs147412464 44322841 + 44322821 44322861 41 CTCTGCAGGTCCTCTCAGATCTTGTGCGGAAGGCCAGGAGT CTCTGCAGGTCCTCTCAGATCTCGTGCGGAAGGCCAGGAGT < 41bp 0.526230702105507 0.779439872741746 0.46765822 0.7275839 prediction 0.506418341272477 Functional Gain - PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44322841 chr22:44322843 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_107713 1 0 1 0 2 PNPLA3 chr22:44322815 3'AG 44322815 Downstream 29bp
chr22 44322843 44322843 1 + T C rs147412464 44322841 + 44322821 44322861 41 CTCTGCAGGTCCTCTCAGATCTTGTGCGGAAGGCCAGGAGT CTCTGCAGGTCCTCTCAGATCTCGTGCGGAAGGCCAGGAGT < 41bp 0.526230702105507 0.779439872741746 0.46765822 0.7275839 prediction 0.506418341272477 Functional Gain - PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44322841 chr22:44322843 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_107713 1 0 1 0 2 PNPLA3 chr22:44322820 3'AG 44322820 Downstream 24bp
chr17 78055787 78055787 1 + T C STAD 78055785 + 78055765 78055805 41 CGGGAGAAGCTGCAGGAGCACATGACCTCCAACAAGACCAC CGGGAGAAGCTGCAGGAGCACACGACCTCCAACAAGACCAC < 41bp 0.557786851088039 0.81099220092679 0.07913834 0.099318445 prediction 0.506410699677502 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78055785 chr17:78055787 nonsynonymous SNV 0.950 0 23 hm5C_associated_SNPs_107714 0 0 0 0 1 CCDC40 chr17:78055857 5'GT 78055857 Upstream 71bp
chr6 36927113 36927113 1 + C A rs144353254 36927112 + 36927092 36927132 41 CTCAGCGCCGCCACCTGCAGCCCAGGCCAGATGTGCGGCCA CTCAGCGCCGCCACCTGCAGCACAGGCCAGATGTGCGGCCA < 41bp 0.501673531594426 0.754869992512395 0.100462765 0.15491998 prediction 0.506392921835938 Functional Gain - PI16 ENSG00000164530 CDS Human protein_coding chr6:36927112 chr6:36927113 nonsynonymous SNV 0.150 1 22 hm5C_associated_SNPs_107715 0 0 0 0 1 PI16 chr6:36927142 5'GT 36927142 Upstream 30bp
chr4 89527178 89527178 1 + T C UCEC 89527176 + 89527156 89527196 41 ACACCAAGGGGCAACTGGGCCATGAGAGGGAAGGAAACAAG ACACCAAGGGGCAACTGGGCCACGAGAGGGAAGGAAACAAG < 41bp 0.55473769636071 0.807926612404895 0.37092024 0.33754855 prediction 0.506377832088371 Functional Gain - HERC3 ENSG00000138641 CDS Human protein_coding chr4:89527176 chr4:89527178 synonymous SNV . 0 23 hm5C_associated_SNPs_107717 0 0 0 0 1 HERC3 chr4:89527200 5'GT 89527200 Upstream 23bp
chr12 96255061 96255061 1 + T C UCEC 96255059 + 96255039 96255079 41 CTGGTATCTGTAGATGGCTACATGAACATGCAGGTAAGCTA CTGGTATCTGTAGATGGCTACACGAACATGCAGGTAAGCTA < 41bp 0.555457255362936 0.808646105274842 0.2981305 0.111097425 prediction 0.506377699823811 Functional Gain - SNRPF ENSG00000139343 CDS Human protein_coding chr12:96255059 chr12:96255061 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_107718 0 0 1 0 1 SNRPF chr12:96255071 5'GT 96255071 Upstream 11bp
chr11 70200478 70200478 1 + C T HNSC 70200477 + 70200457 70200497 41 TGAAACCTCCCCGCCTTCCTCCCCGAGAGCCCTTCGGTTAG TGAAACCTCCCCGCCTTCCTCTCCGAGAGCCCTTCGGTTAG < 41bp 0.517411423297265 0.770597963724372 0.30295506 0.86570156 prediction 0.506373080854213 Functional Gain - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70200477 chr11:70200478 synonymous SNV . 0 22 hm5C_associated_SNPs_107720 0 0 1 0 2 PPFIA1 chr11:70200407 3'AG 70200407 Downstream 72bp
chr11 70200478 70200478 1 + C T HNSC 70200477 + 70200457 70200497 41 TGAAACCTCCCCGCCTTCCTCCCCGAGAGCCCTTCGGTTAG TGAAACCTCCCCGCCTTCCTCTCCGAGAGCCCTTCGGTTAG < 41bp 0.517411423297265 0.770597963724372 0.30295506 0.86570156 prediction 0.506373080854213 Functional Gain - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70200477 chr11:70200478 synonymous SNV . 0 22 hm5C_associated_SNPs_107720 0 0 1 0 2 PPFIA1 chr11:70200558 5'GT 70200558 Upstream 81bp
chr3 9711141 9711141 1 + T A rs189614064 9711137 + 9711117 9711157 41 GGGTGCAGATGATGCCTGGGCAGATGTGGAGGACGTCACGG GGGTGCAGATGATGCCTGGGCAGAAGTGGAGGACGTCACGG < 41bp 0.594817838173022 0.848000900197622 0.8852225 0.7935111 prediction 0.506366124049201 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9711137 chr3:9711141 nonsynonymous SNV 0.575 0 25 hm5C_associated_SNPs_107721 0 0 1 0 2 MTMR14 chr3:9711116 3'AG 9711116 Downstream 26bp
chr3 9711141 9711141 1 + T A rs189614064 9711137 + 9711117 9711157 41 GGGTGCAGATGATGCCTGGGCAGATGTGGAGGACGTCACGG GGGTGCAGATGATGCCTGGGCAGAAGTGGAGGACGTCACGG < 41bp 0.594817838173022 0.848000900197622 0.8852225 0.7935111 prediction 0.506366124049201 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9711137 chr3:9711141 nonsynonymous SNV 0.575 0 25 hm5C_associated_SNPs_107721 0 0 1 0 2 MTMR14 chr3:9711176 5'GT 9711176 Upstream 36bp
chr7 97363054 97363054 1 + T G COAD 97363052 + 97363032 97363072 41 CAGGAGGAACTGCCGGAGCCCTTTGAGCATCTTCTGCAGAG CAGGAGGAACTGCCGGAGCCCTGTGAGCATCTTCTGCAGAG < 41bp 0.414682872689933 0.753182853761293 0.107014745 0.12776282 prediction 0.506365707522587 Functional Gain - TAC1 ENSG00000006128 CDS Human protein_coding chr7:97363052 chr7:97363054 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_107722 0 0 0 0 2 TAC1 chr7:97363035 3'AG 97363035 Downstream 20bp
chr7 97363054 97363054 1 + T G COAD 97363052 + 97363032 97363072 41 CAGGAGGAACTGCCGGAGCCCTTTGAGCATCTTCTGCAGAG CAGGAGGAACTGCCGGAGCCCTGTGAGCATCTTCTGCAGAG < 41bp 0.414682872689933 0.753182853761293 0.107014745 0.12776282 prediction 0.506365707522587 Functional Gain - TAC1 ENSG00000006128 CDS Human protein_coding chr7:97363052 chr7:97363054 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_107722 0 0 0 0 2 TAC1 chr7:97363131 5'GT 97363131 Upstream 78bp
chr7 143421548 143421548 1 + C G rs557106200 143421547 + 143421527 143421567 41 AGGAGCAGGGGTGTGTGGGGCCCCATCCATGAGCTGGGCCA AGGAGCAGGGGTGTGTGGGGCGCCATCCATGAGCTGGGCCA < 41bp 0.454147379338436 0.753181351412569 0.39229184 0.58350515 prediction 0.506362702825138 Functional Gain - TCAF2 ENSG00000170379 CDS Human protein_coding chr7:143421547 chr7:143421548 nonsynonymous SNV 0.988 0 22 hm5C_associated_SNPs_107723 0 0 0 0 1 TCAF2 chr7:143421453 3'AG 143421453 Downstream 96bp
chr12 52309905 52309905 1 + C A LUSC 52309901 + 52309881 52309921 41 GGGCACCAAGCGGTACATGGCACCCGAGGTGCTGGACGAGC GGGCACCAAGCGGTACATGGCACCAGAGGTGCTGGACGAGC < 41bp 0.318545600971719 0.753154338243328 0.1450026 0.24478137 prediction 0.506308676486656 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309901 chr12:52309905 synonymous SNV . 0 25 hm5C_associated_SNPs_107727 0 0 0 0 1 ACVRL1 chr12:52309820 3'AG 52309820 Downstream 86bp
chr11 7669667 7669667 1 + T C KIRP 7669665 + 7669645 7669685 41 GAGCACAGAGCGTGTGTGTGCATGGCTGGAGGACTTTGGCC GAGCACAGAGCGTGTGTGTGCACGGCTGGAGGACTTTGGCC < 41bp 0.523659112328418 0.776791678515375 0.32120195 0.32523018 prediction 0.506265132373913 Functional Gain - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7669665 chr11:7669667 nonsynonymous SNV 0.737 4 23 hm5C_associated_SNPs_107733 0 0 1 0 1 PPFIBP2 chr11:7669618 3'AG 7669618 Downstream 50bp
chr11 73679453 73679453 1 + C T UCEC 73679452 + 73679432 73679472 41 GAGAAGCTACACCCTCGCTTCCGCAGGGAGAATGACAACCT GAGAAGCTACACCCTCGCTTCTGCAGGGAGAATGACAACCT < 41bp 0.540543200155298 0.793673165360541 0.16562593 0.09462768 prediction 0.506259930410486 Functional Gain - DNAJB13 ENSG00000187726 CDS Human protein_coding chr11:73679452 chr11:73679453 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_107735 0 0 0 0 2 DNAJB13 chr11:73679390 3'AG 73679390 Downstream 64bp
chr11 73679453 73679453 1 + C T UCEC 73679452 + 73679432 73679472 41 GAGAAGCTACACCCTCGCTTCCGCAGGGAGAATGACAACCT GAGAAGCTACACCCTCGCTTCTGCAGGGAGAATGACAACCT < 41bp 0.540543200155298 0.793673165360541 0.16562593 0.09462768 prediction 0.506259930410486 Functional Gain - DNAJB13 ENSG00000187726 CDS Human protein_coding chr11:73679452 chr11:73679453 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_107735 0 0 0 0 2 DNAJB13 chr11:73679503 5'GT 73679503 Upstream 51bp
chr13 111160463 111160463 1 - G T rs59395531 111160467 - 111160447 111160487 41 GATGGCGATGGCCGGGGCCTCACACACAGAACAGCGGCTGA GATGGCGATGGCCGGGGCCTCACAAACAGAACAGCGGCTGA < 41bp 0.664082747141755 0.91720177461444 0.11614138 0.19915342 prediction 0.506238054945371 Functional Gain - COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111160467 chr13:111160463 synonymous SNV . 0 25 hm5C_associated_SNPs_107737 1 0 0 0 1 COL4A2 chr13:111160446 5'GT 111160446 Upstream 18bp
chr11 55657435 55657435 1 + T A LUAD 55657431 + 55657411 55657451 41 CTTGCAGGTATGAGTCTCTGCTGCTGCAAGTGTCTGAGCCT CTTGCAGGTATGAGTCTCTGCTGCAGCAAGTGTCTGAGCCT < 41bp 0.599833866653608 0.85293595904636 0.0921042 0.29157126 prediction 0.506204184785504 Functional Gain - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55657431 chr11:55657435 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_107740 0 0 0 0 2 TRIM51 chr11:55657418 3'AG 55657418 Downstream 18bp
chr11 55657435 55657435 1 + T A LUAD 55657431 + 55657411 55657451 41 CTTGCAGGTATGAGTCTCTGCTGCTGCAAGTGTCTGAGCCT CTTGCAGGTATGAGTCTCTGCTGCAGCAAGTGTCTGAGCCT < 41bp 0.599833866653608 0.85293595904636 0.0921042 0.29157126 prediction 0.506204184785504 Functional Gain - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55657431 chr11:55657435 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_107740 0 0 0 0 2 TRIM51 chr11:55657515 5'GT 55657515 Upstream 81bp
chr21 43543040 43543040 1 + C T SKCM 43543039 + 43543019 43543059 41 TGCAAGGCACCAGCCCCACCCCCCAAGGCCTGCCCCAGCGG TGCAAGGCACCAGCCCCACCCTCCAAGGCCTGCCCCAGCGG < 41bp 0.527534435285485 0.780634706123313 0.21683434 0.96637297 prediction 0.506200541675656 Functional Gain - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43543039 chr21:43543040 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_107741 0 0 0 0 1 UMODL1 chr21:43542941 3'AG 43542941 Downstream 100bp
chr9 92279909 92279909 1 + T A rs149429012 92279905 + 92279885 92279925 41 CTCTGGGTCACGCTTGGGGACACATGAAGGATACGCCCTCC CTCTGGGTCACGCTTGGGGACACAAGAAGGATACGCCCTCC < 41bp 0.491272631467127 0.753098343647617 0.28325647 0.23555803 prediction 0.506196687295235 Functional Gain - UNQ6494 ENSG00000130222;ENSG00000237372 intergenic Human other chr9:92279905 chr9:92279909 . . 0 25 hm5C_associated_SNPs_107743 0 0 0 1 1 UNQ6494 chr9:92279843 3'AG 92279843 Downstream 67bp
chr6 43127577 43127577 1 + C A rs55921533 43127573 + 43127553 43127593 41 GGTGCCGCTGCGCTGGATGTCCCCCGAGGCCATCCTGGAGG GGTGCCGCTGCGCTGGATGTCCCCAGAGGCCATCCTGGAGG < 41bp 0.334314370654201 0.753096169356422 0.1438357 0.43647283 prediction 0.506192338712845 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43127573 chr6:43127577 synonymous SNV . 0 25 hm5C_associated_SNPs_107744 0 0 1 0 1 PTK7 chr6:43127526 3'AG 43127526 Downstream 52bp
chr4 89311943 89311943 1 + C A LUAD 89311939 + 89311919 89311959 41 TCAGGTGGCTGCCGGAGGGGCTCACAGCTTTGCCCTGTCTC TCAGGTGGCTGCCGGAGGGGCTCAAAGCTTTGCCCTGTCTC < 41bp 0.324810060917549 0.753088805010732 0.22046185 0.58699155 prediction 0.506177610021465 Functional Gain - HERC6 ENSG00000138642 CDS Human protein_coding chr4:89311939 chr4:89311943 nonsynonymous SNV 0.967 4 25 hm5C_associated_SNPs_107747 0 0 0 0 1 HERC6 chr4:89312031 5'GT 89312031 Upstream 89bp
chr6 147648354 147648354 1 + T G COAD 147648351 + 147648331 147648371 41 GGCACTATTGAATTATATGGCTCTAATGATCCTTATCGGAG GGCACTATTGAATTATATGGCTCGAATGATCCTTATCGGAG < 41bp 0.395695883710359 0.753085341998832 0.30672774 0.03254676 prediction 0.506170683997665 Functional Gain - STXBP5 ENSG00000164506 CDS Human protein_coding chr6:147648351 chr6:147648354 synonymous SNV . 0 24 hm5C_associated_SNPs_107748 0 0 1 0 1 STXBP5 chr6:147648412 5'GT 147648412 Upstream 59bp
chr1 17559377 17559377 1 + T A SKCM 17559373 + 17559353 17559393 41 CCTGGTCCCTCCAGCCTTGACTCCTTCGGCAACCTGGACGT CCTGGTCCCTCCAGCCTTGACTCCATCGGCAACCTGGACGT < 41bp 0.642187425511108 0.895271427293967 0.16620502 0.9705415 prediction 0.506168003565717 Functional Gain - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17559373 chr1:17559377 nonsynonymous SNV 0.370 3 25 hm5C_associated_SNPs_107749 0 0 0 0 1 PADI1 chr1:17559465 5'GT 17559465 Upstream 89bp
chr19 10908073 10908073 1 + C G TGCT 10908072 + 10908052 10908092 41 CCAGGACGGGGCTCTTCACCCCCGACATGGCCTTTGAAGCC CCAGGACGGGGCTCTTCACCCGCGACATGGCCTTTGAAGCC < 41bp 0.45126167189333 0.753083450165924 0.019321918 0.57913905 prediction 0.506166900331847 Functional Gain - DNM2 ENSG00000079805 CDS Human protein_coding chr19:10908072 chr19:10908073 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_107750 0 0 1 0 1 DNM2 chr19:10908056 3'AG 10908056 Downstream 18bp
chr2 11273694 11273694 1 + C A rs115108896 11273693 + 11273673 11273713 41 GTGGCGGGAGCTCCTGGAGGCCGAGCGGCGGGGCCAGCAGC GTGGCGGGAGCTCCTGGAGGCAGAGCGGCGGGGCCAGCAGC < 41bp 0.502470087533579 0.755545674541161 0.82102823 0.9251674 prediction 0.506151174015165 Functional Gain - C2orf50 ENSG00000150873 CDS Human protein_coding chr2:11273693 chr2:11273694 synonymous SNV . 0 22 hm5C_associated_SNPs_107751 0 0 0 0 1 C2orf50 chr2:11273717 5'GT 11273717 Upstream 24bp
chr11 67190856 67190856 1 + T C ESCA 67190854 + 67190834 67190874 41 TGGCTTCTGCAGCTGCACCTCGTGGAGTCAGACCCCAACCA TGGCTTCTGCAGCTGCACCTCGCGGAGTCAGACCCCAACCA < 41bp 0.499105460646194 0.753072987495844 0.6900737 0.86771005 prediction 0.506145974991688 Functional Gain - CARNS1 ENSG00000172508 CDS Human protein_coding chr11:67190854 chr11:67190856 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_107752 0 0 0 0 1 CARNS1 chr11:67190846 3'AG 67190846 Downstream 11bp
chr16 28943864 28943864 1 + C A LUSC 28943863 + 28943843 28943883 41 CAACAGATGGGGGGCTTCTACCTGTGCCAGCCGGGGCCCCC CAACAGATGGGGGGCTTCTACATGTGCCAGCCGGGGCCCCC < 41bp 0.486733800840054 0.753061091957864 0.32984257 0.5898032 prediction 0.506122183915727 Functional Gain - CD19 ENSG00000177455 CDS Human protein_coding chr16:28943863 chr16:28943864 nonsynonymous SNV 0.992 3 22 hm5C_associated_SNPs_107754 0 0 0 0 1 CD19 chr16:28943933 5'GT 28943933 Upstream 70bp
chr19 5915155 5915155 1 + C A rs201938368 5915151 + 5915131 5915171 41 TTCGACTCCTCTGAGAAGGACGGGCAGGTGGGTGGCTGCGC TTCGACTCCTCTGAGAAGGACGGGAAGGTGGGTGGCTGCGC < 41bp 0.661658926883192 0.914672655380403 0.6350848 0.8440541 prediction 0.506027456994421 Functional Gain - CAPS ENSG00000105519 CDS Human protein_coding chr19:5915151 chr19:5915155 nonsynonymous SNV 0.983 1 25 hm5C_associated_SNPs_107760 0 0 0 0 1 CAPS chr19:5915157 5'GT 5915157 Upstream 3bp
chr14 55241680 55241680 1 + C T UCEC 55241679 + 55241659 55241699 41 TTTGGGCAATCCAACTCCCTCCCGACGGCTGGCTCTGTGGG TTTGGGCAATCCAACTCCCTCTCGACGGCTGGCTCTGTGGG < 41bp 0.486837549461902 0.753010456931416 0.11230108 0.35475957 prediction 0.506020913862832 Functional Gain - SAMD4A ENSG00000020577 CDS Human protein_coding chr14:55241679 chr14:55241680 nonsynonymous SNV 0.891 4 22 hm5C_associated_SNPs_107761 0 0 1 0 1 SAMD4A chr14:55241652 3'AG 55241652 Downstream 29bp
chr3 13655645 13655645 1 + C A rs61731211 13655644 + 13655624 13655664 41 GGTTCGCCGACCTCCAGAGCCCGCAGCTGCACCACGGAGAG GGTTCGCCGACCTCCAGAGCCAGCAGCTGCACCACGGAGAG < 41bp 0.516391199522392 0.769401116910199 0.6168443 0.9217262 prediction 0.506019834775616 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13655644 chr3:13655645 synonymous SNV . 0 22 hm5C_associated_SNPs_107762 0 0 0 0 1 FBLN2 chr3:13655664 5'GT 13655664 Upstream 20bp
chr17 27580752 27580752 1 + T C LUSC 27580750 + 27580730 27580770 41 GACTACCCCTCCTTGCAAGCCATGGGCTGGTTCAACAACGA GACTACCCCTCCTTGCAAGCCACGGGCTGGTTCAACAACGA < 41bp 0.541046341038827 0.794050491525701 0.097091615 0.19344944 prediction 0.506008300973749 Functional Gain - CRYBA1 ENSG00000108255 CDS Human protein_coding chr17:27580750 chr17:27580752 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_107763 0 0 0 0 2 CRYBA1 chr17:27580658 3'AG 27580658 Downstream 95bp
chr17 27580752 27580752 1 + T C LUSC 27580750 + 27580730 27580770 41 GACTACCCCTCCTTGCAAGCCATGGGCTGGTTCAACAACGA GACTACCCCTCCTTGCAAGCCACGGGCTGGTTCAACAACGA < 41bp 0.541046341038827 0.794050491525701 0.097091615 0.19344944 prediction 0.506008300973749 Functional Gain - CRYBA1 ENSG00000108255 CDS Human protein_coding chr17:27580750 chr17:27580752 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_107763 0 0 0 0 2 CRYBA1 chr17:27580800 5'GT 27580800 Upstream 49bp
chr17 4645324 4645324 1 + T C rs3826517 4645322 + 4645302 4645342 41 CCCTTCGTGCTCGAACCTGCCATGTGTGTCACAGGCACAGC CCCTTCGTGCTCGAACCTGCCACGTGTGTCACAGGCACAGC < 41bp 0.53492778937894 0.787930350508547 0.18828142 0.30189925 prediction 0.506005122259214 Functional Gain - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4645322 chr17:4645324 synonymous SNV . 0 23 hm5C_associated_SNPs_107764 0 0 0 0 1 ZMYND15 chr17:4645365 5'GT 4645365 Upstream 42bp
chr22 41076992 41076992 1 + T C UCEC 41076990 + 41076970 41077010 41 GGGAGCATCTCCTACATCAACATCATCATGCCTTCGGTGTT GGGAGCATCTCCTACATCAACACCATCATGCCTTCGGTGTT < 41bp 0.524349042062946 0.777348826702478 0.005533844 0.005432695 prediction 0.505999569279064 Functional Gain - MCHR1 ENSG00000128285 CDS Human protein_coding chr22:41076990 chr22:41076992 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_107766 0 0 0 0 1 MCHR1 chr22:41076953 3'AG 41076953 Downstream 40bp
chr3 38151608 38151608 1 + C A COAD 38151604 + 38151584 38151624 41 TTTCAGCACAGAGCAGTGGCCAGGCCACCCAAAGGAGCTCC TTTCAGCACAGAGCAGTGGCCAGGACACCCAAAGGAGCTCC < 41bp 0.359786934853156 0.752999391083285 0.3697924 0.3511241 prediction 0.505998782166569 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38151604 chr3:38151608 synonymous SNV . 0 25 hm5C_associated_SNPs_107767 0 0 0 0 1 DLEC1 chr3:38151590 3'AG 38151590 Downstream 19bp
chr17 61615786 61615786 1 + C T UCEC 61615785 + 61615765 61615805 41 TTGCAGGTGCTGAAGGGCTTCCCCGAGTGCCTGCAGGCTGA TTGCAGGTGCTGAAGGGCTTCTCCGAGTGCCTGCAGGCTGA < 41bp 0.507181626436958 0.760157636857569 0.39126813 0.87655306 prediction 0.505952020841223 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61615785 chr17:61615786 nonsynonymous SNV 0.987 5 22 hm5C_associated_SNPs_107769 0 0 0 0 1 KCNH6 chr17:61615771 3'AG 61615771 Downstream 16bp
chrX 46898410 46898410 1 + C A UCEC 46898406 + 46898386 46898426 41 CACGAAGATCTCCCACATCCCACCCAGTCGGTGGGCCTTAG CACGAAGATCTCCCACATCCCACCAAGTCGGTGGGCCTTAG < 41bp 0.317317262328238 0.752946569106912 0.0060387254 0.05736512 prediction 0.505893138213825 Functional Gain - JADE3 ENSG00000102221 CDS Human protein_coding chrX:46898406 chrX:46898410 synonymous SNV . 0 25 hm5C_associated_SNPs_107775 0 0 0 0 2 JADE3 chrX:46898351 3'AG 46898351 Downstream 60bp
chrX 46898410 46898410 1 + C A UCEC 46898406 + 46898386 46898426 41 CACGAAGATCTCCCACATCCCACCCAGTCGGTGGGCCTTAG CACGAAGATCTCCCACATCCCACCAAGTCGGTGGGCCTTAG < 41bp 0.317317262328238 0.752946569106912 0.0060387254 0.05736512 prediction 0.505893138213825 Functional Gain - JADE3 ENSG00000102221 CDS Human protein_coding chrX:46898406 chrX:46898410 synonymous SNV . 0 25 hm5C_associated_SNPs_107775 0 0 0 0 2 JADE3 chrX:46898467 5'GT 46898467 Upstream 58bp
chr3 112993283 112993283 1 + C A LUAD 112993279 + 112993259 112993299 41 TACTGGCACACCTCCTGTATCACCCTCCAAACTCGGCAACC TACTGGCACACCTCCTGTATCACCATCCAAACTCGGCAACC < 41bp 0.329670725096691 0.752944386820675 0.0115197 0.040935457 prediction 0.50588877364135 Functional Gain - BOC ENSG00000144857 CDS Human protein_coding chr3:112993279 chr3:112993283 synonymous SNV . 0 25 hm5C_associated_SNPs_107776 0 0 0 0 1 BOC chr3:112993222 3'AG 112993222 Downstream 62bp
chrX 48545194 48545194 1 + T G GBM 48545192 + 48545172 48545212 41 CCTCCAGTGGGTCCGCTCTCCCTGGGGCTGGCGACAGTGGA CCTCCAGTGGGTCCGCTCTCCCGGGGGCTGGCGACAGTGGA < 41bp 0.387009633801279 0.752920465188355 0.27824804 0.94417065 prediction 0.505840930376711 Functional Gain - WAS ENSG00000015285 CDS Human protein_coding chrX:48545192 chrX:48545194 nonsynonymous SNV 0.623 3 23 hm5C_associated_SNPs_107779 0 0 1 0 1 WAS chrX:48545170 3'AG 48545170 Downstream 25bp
chr1 27158956 27158956 1 + C A rs190999121 27158952 + 27158932 27158972 41 TTCTAGCTGTCCCTACCTGGCTCGCAAGCTGACCCTTGCCA TTCTAGCTGTCCCTACCTGGCTCGAAAGCTGACCCTTGCCA < 41bp 0.326001836180378 0.752920242272849 0.041399002 0.14431876 prediction 0.505840484545698 Functional Gain - ZDHHC18 ENSG00000204160 CDS Human protein_coding chr1:27158952 chr1:27158956 synonymous SNV . 0 25 hm5C_associated_SNPs_107780 0 0 1 0 1 ZDHHC18 chr1:27158938 3'AG 27158938 Downstream 19bp
chr13 37007295 37007295 1 + C T SKCM 37007294 + 37007274 37007314 41 AGCCCCGCTGGGCCAGGATCCCCCGCAGAGGACAGTGCTAG AGCCCCGCTGGGCCAGGATCCTCCGCAGAGGACAGTGCTAG < 41bp 0.506080658637355 0.759000894295673 0.17714739 0.2716173 prediction 0.505840471316636 Functional Gain - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37007294 chr13:37007295 synonymous SNV . 0 22 hm5C_associated_SNPs_107781 0 0 0 0 1 CCNA1 chr13:37007358 5'GT 37007358 Upstream 64bp
chr12 71898435 71898435 1 + C T SKCM 71898434 + 71898414 71898454 41 TCAGTCAGCTGCTCCCGAATCCCCTGCCCAGTCTCCGCTTC TCAGTCAGCTGCTCCCGAATCTCCTGCCCAGTCTCCGCTTC < 41bp 0.505362471694633 0.758270133901419 0.093535185 0.108474046 prediction 0.505815324413571 Functional Gain - LGR5 ENSG00000139292 CDS Human protein_coding chr12:71898434 chr12:71898435 nonsynonymous SNV 0.064 0 22 hm5C_associated_SNPs_107782 0 0 1 0 2 LGR5 chr12:71898394 3'AG 71898394 Downstream 42bp
chr12 71898435 71898435 1 + C T SKCM 71898434 + 71898414 71898454 41 TCAGTCAGCTGCTCCCGAATCCCCTGCCCAGTCTCCGCTTC TCAGTCAGCTGCTCCCGAATCTCCTGCCCAGTCTCCGCTTC < 41bp 0.505362471694633 0.758270133901419 0.093535185 0.108474046 prediction 0.505815324413571 Functional Gain - LGR5 ENSG00000139292 CDS Human protein_coding chr12:71898434 chr12:71898435 nonsynonymous SNV 0.064 0 22 hm5C_associated_SNPs_107782 0 0 1 0 2 LGR5 chr12:71898465 5'GT 71898465 Upstream 31bp
chr9 110081110 110081110 1 + C A UCEC 110081109 + 110081089 110081129 41 CGAGAGCAAGTAATTGCAGCCCTGAGAGCCAGTTTCAACAA CGAGAGCAAGTAATTGCAGCCATGAGAGCCAGTTTCAACAA < 41bp 0.49701786217255 0.752901848017247 0.02123189 0.20414817 prediction 0.505803696034495 Functional Gain - RAD23B ENSG00000119318 CDS Human protein_coding chr9:110081109 chr9:110081110 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_107783 0 0 1 0 2 RAD23B chr9:110081033 3'AG 110081033 Downstream 78bp
chr9 110081110 110081110 1 + C A UCEC 110081109 + 110081089 110081129 41 CGAGAGCAAGTAATTGCAGCCCTGAGAGCCAGTTTCAACAA CGAGAGCAAGTAATTGCAGCCATGAGAGCCAGTTTCAACAA < 41bp 0.49701786217255 0.752901848017247 0.02123189 0.20414817 prediction 0.505803696034495 Functional Gain - RAD23B ENSG00000119318 CDS Human protein_coding chr9:110081109 chr9:110081110 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_107783 0 0 1 0 2 RAD23B chr9:110081160 5'GT 110081160 Upstream 51bp
chr19 31025796 31025796 1 + C A LUAD 31025792 + 31025772 31025812 41 GGAGATCTGCCGGCGTCCAGCAACCAGCGCTGCTTCGCGAC GGAGATCTGCCGGCGTCCAGCAACAAGCGCTGCTTCGCGAC < 41bp 0.328947497680628 0.752884391061193 0.30549332 0.3601082 prediction 0.505768782122387 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:31025792 chr19:31025796 nonsynonymous SNV 0.905 0 25 hm5C_associated_SNPs_107784 0 0 0 0 1 ZNF536 chr19:31025754 3'AG 31025754 Downstream 43bp
chr19 58991638 58991638 1 + C A rs36095067 58991634 + 58991614 58991654 41 GAGGGCTTGTCTGGGGCTGCCACTCCTGCCCCCACTGTGCG GAGGGCTTGTCTGGGGCTGCCACTACTGCCCCCACTGTGCG < 41bp 0.373267183752325 0.752876942488873 0.32351887 0.35819957 prediction 0.505753884977746 Functional Gain - ZNF446 ENSG00000083838 CDS Human protein_coding chr19:58991634 chr19:58991638 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_107786 0 0 0 0 1 ZNF446 chr19:58991543 3'AG 58991543 Downstream 96bp
chr11 60689319 60689319 1 + C G ESCA 60689318 + 60689298 60689338 41 CCTGCTGTGGGGAGCAGGGGCCCTGGTCGTCTACTGGCTGC CCTGCTGTGGGGAGCAGGGGCGCTGGTCGTCTACTGGCTGC < 41bp 0.595881542290775 0.84871955060299 0.69888777 0.8660546 prediction 0.505676016624431 Functional Gain - TMEM109 ENSG00000110108 CDS Human protein_coding chr11:60689318 chr11:60689319 synonymous SNV . 0 22 hm5C_associated_SNPs_107791 0 0 1 0 1 TMEM109 chr11:60689246 3'AG 60689246 Downstream 74bp
chr20 39974594 39974594 1 + C A COAD 39974590 + 39974570 39974610 41 TTCCGGTGCTCACCCTTCCACGTGCGTTTTGGCAAGCTGGG TTCCGGTGCTCACCCTTCCACGTGAGTTTTGGCAAGCTGGG < 41bp 0.352220709685542 0.75283643211899 0.13571331 0.26270777 prediction 0.50567286423798 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39974590 chr20:39974594 nonsynonymous SNV 0.988 5 25 hm5C_associated_SNPs_107792 0 0 0 0 1 LPIN3 chr20:39974635 5'GT 39974635 Upstream 42bp
chr1 17668876 17668876 1 + C T MESO 17668875 + 17668855 17668895 41 TGACCCCCAACACCCAGCCCCCGCAGGAGGTGTACGCGTGC TGACCCCCAACACCCAGCCCCTGCAGGAGGTGTACGCGTGC < 41bp 0.507562152350101 0.760382684392712 0.06596333 0.20921475 prediction 0.505641064085222 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17668875 chr1:17668876 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_107794 0 0 0 0 2 PADI4 chr1:17668794 3'AG 17668794 Downstream 83bp
chr1 17668876 17668876 1 + C T MESO 17668875 + 17668855 17668895 41 TGACCCCCAACACCCAGCCCCCGCAGGAGGTGTACGCGTGC TGACCCCCAACACCCAGCCCCTGCAGGAGGTGTACGCGTGC < 41bp 0.507562152350101 0.760382684392712 0.06596333 0.20921475 prediction 0.505641064085222 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17668875 chr1:17668876 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_107794 0 0 0 0 2 PADI4 chr1:17668897 5'GT 17668897 Upstream 22bp
chr9 101778346 101778346 1 + C A rs35529307 101778345 + 101778325 101778365 41 AAGAGTCCGGCAGCCCTCCCCCTGATGGGCCACCGCTGCCC AAGAGTCCGGCAGCCCTCCCCATGATGGGCCACCGCTGCCC < 41bp 0.513760546142488 0.766575948963302 0.18095103 0.57274514 prediction 0.505630805641628 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101778345 chr9:101778346 nonsynonymous SNV 0.011 3 22 hm5C_associated_SNPs_107796 0 0 0 0 1 COL15A1 chr9:101778401 5'GT 101778401 Upstream 56bp
chr5 126113479 126113479 1 + C G rs74362780 126113475 + 126113455 126113495 41 GCTGGCCGACGCGCGACGCGCGCTCGACGACACGGCCCGCG GCTGGCCGACGCGCGACGCGCGCTGGACGACACGGCCCGCG < 41bp 0.560657070627468 0.813461994231148 0.0839023 0.14776894 prediction 0.50560984720736 Functional Gain - LMNB1 ENSG00000113368 CDS Human protein_coding chr5:126113475 chr5:126113479 synonymous SNV . 0 25 hm5C_associated_SNPs_107799 0 0 1 0 1 LMNB1 chr5:126113559 5'GT 126113559 Upstream 81bp
chr1 45224990 45224990 1 + T C rs139346428 45224988 + 45224968 45225008 41 GTTAACTCTGCTGATGATGTCATCAAGATGATCGACATGGG GTTAACTCTGCTGATGATGTCACCAAGATGATCGACATGGG < 41bp 0.562867585695493 0.815663490437875 0.08492836 0.20112795 prediction 0.505591809484764 Functional Gain - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45224988 chr1:45224990 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_107800 0 0 1 0 1 KIF2C chr1:45225020 5'GT 45225020 Upstream 31bp
chr11 44640229 44640229 1 + C A UCEC 44640228 + 44640208 44640248 41 CAGGCGTGGCTGCAGGAGAACCTGGGCATCATCCTCGGCGT CAGGCGTGGCTGCAGGAGAACATGGGCATCATCCTCGGCGT < 41bp 0.515629383026528 0.768424719589134 0.265813 0.24554002 prediction 0.505590673125211 Functional Gain - CD82 ENSG00000085117 CDS Human protein_coding chr11:44640228 chr11:44640229 nonsynonymous SNV 0.481 2 22 hm5C_associated_SNPs_107801 0 0 0 0 2 CD82 chr11:44640190 3'AG 44640190 Downstream 40bp
chr11 44640229 44640229 1 + C A UCEC 44640228 + 44640208 44640248 41 CAGGCGTGGCTGCAGGAGAACCTGGGCATCATCCTCGGCGT CAGGCGTGGCTGCAGGAGAACATGGGCATCATCCTCGGCGT < 41bp 0.515629383026528 0.768424719589134 0.265813 0.24554002 prediction 0.505590673125211 Functional Gain - CD82 ENSG00000085117 CDS Human protein_coding chr11:44640228 chr11:44640229 nonsynonymous SNV 0.481 2 22 hm5C_associated_SNPs_107801 0 0 0 0 2 CD82 chr11:44640273 5'GT 44640273 Upstream 45bp
chr3 44607114 44607114 1 + C A STAD 44607113 + 44607093 44607133 41 CACCTGGAGCCTCCTTATGACCCAGGGACACACCACCTCCC CACCTGGAGCCTCCTTATGACACAGGGACACACCACCTCCC < 41bp 0.494336619724211 0.752780400281256 0.023407668 0.12964636 prediction 0.505560800562513 Functional Gain - ZKSCAN7 ENSG00000196345;ENSG00000273303 CDS Human other chr3:44607113 chr3:44607114 nonsynonymous SNV 0.011 0 22 hm5C_associated_SNPs_107804 0 0 0 0 1 ZKSCAN7 chr3:44607147 5'GT 44607147 Upstream 34bp
chr1 150997270 150997270 1 + T C UCEC 150997268 + 150997248 150997288 41 GGCAAACTGCAGCCCTTCTGCATGGTAAGGGTGGCTTTTGG GGCAAACTGCAGCCCTTCTGCACGGTAAGGGTGGCTTTTGG < 41bp 0.527054938818183 0.779831666457254 0.44715187 0.38891983 prediction 0.505553455278142 Functional Gain - PRUNE1 ENSG00000143363 CDS Human protein_coding chr1:150997268 chr1:150997270 synonymous SNV . 0 23 hm5C_associated_SNPs_107805 0 0 0 0 1 PRUNE1 chr1:150997271 5'GT 150997271 Upstream 2bp
chr16 29848100 29848100 1 + C T UCEC 29848099 + 29848079 29848119 41 GACTTCAGGGGAGTGTCCCGCCGCACTGGGGAGGAGTGGCT GACTTCAGGGGAGTGTCCCGCTGCACTGGGGAGGAGTGGCT < 41bp 0.504892929871295 0.757640961589828 0.86554563 0.86030257 prediction 0.505496063437064 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29848099 chr16:29848100 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_107810 0 0 0 0 1 MVP chr16:29848043 3'AG 29848043 Downstream 58bp
chr11 55032762 55032762 1 + C A LUAD 55032761 + 55032741 55032781 41 ACCGGTATCACAGACACTGTCCCGCTGAGTGGGCTGCTGAG ACCGGTATCACAGACACTGTCACGCTGAGTGGGCTGCTGAG < 41bp 0.509702124100996 0.7624388381586 0.21450004 0.35147378 prediction 0.505473428115207 Functional Gain - TRIM48 ENSG00000150244 CDS Human protein_coding chr11:55032761 chr11:55032762 nonsynonymous SNV 0.038 3 22 hm5C_associated_SNPs_107813 0 0 0 0 1 TRIM48 chr11:55032790 5'GT 55032790 Upstream 29bp
chr12 27175494 27175494 1 + T A rs3963548 27175490 + 27175470 27175510 41 CGGAAGAGCAGCTGTTTTGGCGTCTGTTTGCTGCGGTAGGA CGGAAGAGCAGCTGTTTTGGCGTCAGTTTGCTGCGGTAGGA < 41bp 0.561065629997615 0.813769186350589 0.33173844 0.3424925 prediction 0.505407112705949 Functional Gain - MED21 ENSG00000152944 UTR5 Human protein_coding chr12:27175490 chr12:27175494 . . 0 25 hm5C_associated_SNPs_107817 0 0 1 0 1 MED21 chr12:27175554 5'GT 27175554 Upstream 61bp
chr6 27356783 27356783 1 + C G rs188001937 27356782 + 27356762 27356802 41 TTCCGCTCCAAGTGCGGGACCCGCCCGGGGTGTGTCGGGGG TTCCGCTCCAAGTGCGGGACCGGCCCGGGGTGTGTCGGGGG < 41bp 0.492900588276327 0.752699709519656 0.06224665 0.17979431 prediction 0.505399419039311 Functional Gain - ZNF391 ENSG00000124613 UTR5 Human protein_coding chr6:27356782 chr6:27356783 . . 0 22 hm5C_associated_SNPs_107819 0 0 0 0 1 ZNF391 chr6:27356854 5'GT 27356854 Upstream 72bp
chr8 145065447 145065447 1 + C A UCEC 145065446 + 145065426 145065466 41 ACAACTATCCTCCCCCCAACCCTGGATATCCGGGGGGGCCC ACAACTATCCTCCCCCCAACCATGGATATCCGGGGGGGCCC < 41bp 0.49930650982916 0.752691381561325 0.2817061 0.24530303 prediction 0.505382763122651 Functional Gain - GRINA ENSG00000178719 CDS Human protein_coding chr8:145065446 chr8:145065447 nonsynonymous SNV 0.748 1 22 hm5C_associated_SNPs_107821 0 0 1 0 1 GRINA chr8:145065368 3'AG 145065368 Downstream 80bp
chr22 26709777 26709777 1 + C T SARC 26709776 + 26709756 26709796 41 GTGGCTGGGGTGGTATTGTCCCCAAACTGGCCCGAGCCCTA GTGGCTGGGGTGGTATTGTCCTCAAACTGGCCCGAGCCCTA < 41bp 0.494381855187868 0.752686755163158 0.27599186 0.07841098 prediction 0.505373510326317 Functional Gain - SEZ6L ENSG00000100095 CDS Human protein_coding chr22:26709776 chr22:26709777 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_107822 0 0 0 0 2 SEZ6L chr22:26709730 3'AG 26709730 Downstream 48bp
chr22 26709777 26709777 1 + C T SARC 26709776 + 26709756 26709796 41 GTGGCTGGGGTGGTATTGTCCCCAAACTGGCCCGAGCCCTA GTGGCTGGGGTGGTATTGTCCTCAAACTGGCCCGAGCCCTA < 41bp 0.494381855187868 0.752686755163158 0.27599186 0.07841098 prediction 0.505373510326317 Functional Gain - SEZ6L ENSG00000100095 CDS Human protein_coding chr22:26709776 chr22:26709777 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_107822 0 0 0 0 2 SEZ6L chr22:26709868 5'GT 26709868 Upstream 92bp
chr20 3785499 3785499 1 + T C BRCA 3785497 + 3785477 3785517 41 GAACCCCAGGACTACCGGCCCATGAACCACGAGGCCTTCAA GAACCCCAGGACTACCGGCCCACGAACCACGAGGCCTTCAA < 41bp 0.522264216002746 0.774941753118341 0.08426899 0.13418987 prediction 0.50535507423119 Functional Gain - CDC25B ENSG00000101224 CDS Human protein_coding chr20:3785497 chr20:3785499 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_107824 0 0 1 0 1 CDC25B chr20:3785468 3'AG 3785468 Downstream 32bp
chr4 110789053 110789053 1 + C A BRCA 110789052 + 110789032 110789072 41 TGATGCCACTGGCTTCCCCACCCCACAGATCACATGGACCA TGATGCCACTGGCTTCCCCACACCACAGATCACATGGACCA < 41bp 0.506299682609139 0.758950140862402 0.131679 0.09875214 prediction 0.505300916506526 Functional Gain - LRIT3 ENSG00000183423 CDS Human protein_coding chr4:110789052 chr4:110789053 synonymous SNV . 0 22 hm5C_associated_SNPs_107832 0 0 1 0 1 LRIT3 chr4:110789102 5'GT 110789102 Upstream 50bp
chr1 203472722 203472722 1 + C A LUAD 203472721 + 203472701 203472741 41 GAGAGACGTCTTCTGTGACCCCGAGGAGCACAAACACACCC GAGAGACGTCTTCTGTGACCCAGAGGAGCACAAACACACCC < 41bp 0.504995133793344 0.757637456207576 0.15812474 0.6797692 prediction 0.505284644828466 Functional Gain - OPTC ENSG00000188770 CDS Human protein_coding chr1:203472721 chr1:203472722 synonymous SNV . 0 22 hm5C_associated_SNPs_107834 0 0 0 0 1 OPTC chr1:203472678 3'AG 203472678 Downstream 45bp
chr10 71665558 71665558 1 + C G rs200902481 71665557 + 71665537 71665577 41 TCCCAGGGAGACCCAGGGATCCAGGGCTACCACGGCCGGAA TCCCAGGGAGACCCAGGGATCGAGGGCTACCACGGCCGGAA < 41bp 0.462021378557798 0.752640012204117 0.93180484 0.94529593 prediction 0.505280024408234 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71665557 chr10:71665558 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_107835 0 0 0 0 2 COL13A1 chr10:71665543 3'AG 71665543 Downstream 16bp
chr10 71665558 71665558 1 + C G rs200902481 71665557 + 71665537 71665577 41 TCCCAGGGAGACCCAGGGATCCAGGGCTACCACGGCCGGAA TCCCAGGGAGACCCAGGGATCGAGGGCTACCACGGCCGGAA < 41bp 0.462021378557798 0.752640012204117 0.93180484 0.94529593 prediction 0.505280024408234 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71665557 chr10:71665558 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_107835 0 0 0 0 2 COL13A1 chr10:71665578 5'GT 71665578 Upstream 21bp
chr12 113704138 113704138 1 + C T SKCM 113704137 + 113704117 113704157 41 CTGTGCGAGGCCCCCGCCGTCCCCGCACTCCGGCTTGGCAT CTGTGCGAGGCCCCCGCCGTCTCCGCACTCCGGCTTGGCAT < 41bp 0.512314533769764 0.764948679671816 0.071529955 0.3067904 prediction 0.505268291804104 Functional Gain - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113704137 chr12:113704138 nonsynonymous SNV 0.145 4 22 hm5C_associated_SNPs_107836 0 0 0 0 1 TPCN1 chr12:113704161 5'GT 113704161 Upstream 24bp
chr16 20432665 20432665 1 + C A rs150645471 20432664 + 20432644 20432684 41 ACCAGCGGAACCACCGGGGCCCCCAAGATGGTCGAGCACTC ACCAGCGGAACCACCGGGGCCACCAAGATGGTCGAGCACTC < 41bp 0.511357001091475 0.763973265652535 0.12803486 0.2979598 prediction 0.505232529122119 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20432664 chr16:20432665 nonsynonymous SNV 0.842 5 22 hm5C_associated_SNPs_107840 0 0 0 0 2 ACSM5 chr16:20432580 3'AG 20432580 Downstream 86bp
chr16 20432665 20432665 1 + C A rs150645471 20432664 + 20432644 20432684 41 ACCAGCGGAACCACCGGGGCCCCCAAGATGGTCGAGCACTC ACCAGCGGAACCACCGGGGCCACCAAGATGGTCGAGCACTC < 41bp 0.511357001091475 0.763973265652535 0.12803486 0.2979598 prediction 0.505232529122119 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20432664 chr16:20432665 nonsynonymous SNV 0.842 5 22 hm5C_associated_SNPs_107840 0 0 0 0 2 ACSM5 chr16:20432723 5'GT 20432723 Upstream 59bp
chr19 36357124 36357124 1 + T C HNSC 36357122 + 36357102 36357142 41 GCCTGAGCCTTGGCGAAGCCCCTGGAGGAGGTCTCTTCCTG GCCTGAGCCTTGGCGAAGCCCCCGGAGGAGGTCTCTTCCTG < 41bp 0.496211529299315 0.752608051627324 0.33644348 0.30108207 prediction 0.505216103254648 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36357122 chr19:36357124 synonymous SNV . 0 23 hm5C_associated_SNPs_107841 0 0 0 0 2 KIRREL2 chr19:36357059 3'AG 36357059 Downstream 66bp
chr19 36357124 36357124 1 + T C HNSC 36357122 + 36357102 36357142 41 GCCTGAGCCTTGGCGAAGCCCCTGGAGGAGGTCTCTTCCTG GCCTGAGCCTTGGCGAAGCCCCCGGAGGAGGTCTCTTCCTG < 41bp 0.496211529299315 0.752608051627324 0.33644348 0.30108207 prediction 0.505216103254648 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36357122 chr19:36357124 synonymous SNV . 0 23 hm5C_associated_SNPs_107841 0 0 0 0 2 KIRREL2 chr19:36357097 3'AG 36357097 Downstream 28bp
chr3 9490166 9490166 1 + C A BRCA 9490162 + 9490142 9490182 41 TCACAACGGATCCAACTGTACTGGCAACGACCCTAAACATG TCACAACGGATCCAACTGTACTGGAAACGACCCTAAACATG < 41bp 0.334193098102749 0.752607029012388 0.1240854 0.13192296 prediction 0.505214058024776 Functional Gain - SETD5 ENSG00000168137 CDS Human protein_coding chr3:9490162 chr3:9490166 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_107842 0 0 1 0 1 SETD5 chr3:9490072 3'AG 9490072 Downstream 95bp
chr16 56686917 56686917 1 + C A rs77377595 56686916 + 56686896 56686936 41 TTGCTGCCCCGTGGGCTGTGCCAAGTGTGCCCAGGGCTGTG TTGCTGCCCCGTGGGCTGTGCAAAGTGTGCCCAGGGCTGTG < 41bp 0.502834780566548 0.755441039610422 0.5599987 0.27397966 prediction 0.505212518087747 Functional Gain - MT1B ENSG00000169688 CDS Human protein_coding chr16:56686916 chr16:56686917 nonsynonymous SNV 0.982 0 22 hm5C_associated_SNPs_107843 0 0 0 0 1 MT1B chr16:56686886 3'AG 56686886 Downstream 32bp
chr3 97356779 97356779 1 + C A LUAD 97356775 + 97356755 97356795 41 AATGCTCCGAGGCATTGCATCAGGCATGAAGTATCTTTCTG AATGCTCCGAGGCATTGCATCAGGAATGAAGTATCTTTCTG < 41bp 0.411340217438257 0.75260588728806 0.88494617 0.9054551 prediction 0.50521177457612 Functional Gain - EPHA6 ENSG00000080224 CDS Human protein_coding chr3:97356775 chr3:97356779 synonymous SNV . 0 25 hm5C_associated_SNPs_107844 0 0 0 1 1 EPHA6 chr3:97356717 3'AG 97356717 Downstream 63bp
chr1 164790850 164790850 1 + C T UCEC 164790849 + 164790829 164790869 41 CAGCCAGTCAGATGTACAGTCCGCAGGGCATCAGTGTAAGA CAGCCAGTCAGATGTACAGTCTGCAGGGCATCAGTGTAAGA < 41bp 0.516932554993376 0.769519584623998 0.12297708 0.23453858 prediction 0.505174059261243 Functional Gain - PBX1 ENSG00000185630 CDS Human protein_coding chr1:164790849 chr1:164790850 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_107845 0 0 0 0 1 PBX1 chr1:164790774 3'AG 164790774 Downstream 77bp
chr10 70928377 70928377 1 + T C COAD 70928375 + 70928355 70928395 41 GATGAGGAAGACCGGAGGTACTTCAAACAGCAGGTATGGTG GATGAGGAAGACCGGAGGTACTCCAAACAGCAGGTATGGTG < 41bp 0.470800411482817 0.752543759747543 0.19335273 0.94805133 prediction 0.505087519495087 Functional Gain - VPS26A ENSG00000122958 CDS Human protein_coding chr10:70928375 chr10:70928377 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_107849 0 0 1 0 1 VPS26A chr10:70928387 5'GT 70928387 Upstream 11bp
chr11 68700858 68700858 1 + C T UCEC 68700857 + 68700837 68700877 41 CGGACACTGACGGTGCAGTACCGCATGCACCAGGCTATCAT CGGACACTGACGGTGCAGTACTGCATGCACCAGGCTATCAT < 41bp 0.548397631649071 0.800936718362344 0.17660022 0.1643587 prediction 0.505078173426547 Functional Gain - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68700857 chr11:68700858 nonsynonymous SNV 0.983 5 22 hm5C_associated_SNPs_107850 0 0 0 0 2 IGHMBP2 chr11:68700767 3'AG 68700767 Downstream 92bp
chr11 68700858 68700858 1 + C T UCEC 68700857 + 68700837 68700877 41 CGGACACTGACGGTGCAGTACCGCATGCACCAGGCTATCAT CGGACACTGACGGTGCAGTACTGCATGCACCAGGCTATCAT < 41bp 0.548397631649071 0.800936718362344 0.17660022 0.1643587 prediction 0.505078173426547 Functional Gain - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68700857 chr11:68700858 nonsynonymous SNV 0.983 5 22 hm5C_associated_SNPs_107850 0 0 0 0 2 IGHMBP2 chr11:68700949 5'GT 68700949 Upstream 92bp
chr16 28878700 28878700 1 + C G BLCA 28878699 + 28878679 28878719 41 TGCTCTTCTATCACAGACGTCCGGACAACCACAGCCCTGGA TGCTCTTCTATCACAGACGTCGGGACAACCACAGCCCTGGA < 41bp 0.432624638000059 0.752535442093362 0.29796404 0.8648813 prediction 0.505070884186725 Functional Gain - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28878699 chr16:28878700 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_107851 0 0 1 0 3 SH2B1 chr16:28878652 3'AG 28878652 Downstream 49bp
chr16 28878700 28878700 1 + C G BLCA 28878699 + 28878679 28878719 41 TGCTCTTCTATCACAGACGTCCGGACAACCACAGCCCTGGA TGCTCTTCTATCACAGACGTCGGGACAACCACAGCCCTGGA < 41bp 0.432624638000059 0.752535442093362 0.29796404 0.8648813 prediction 0.505070884186725 Functional Gain - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28878699 chr16:28878700 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_107851 0 0 1 0 3 SH2B1 chr16:28878695 3'AG 28878695 Downstream 6bp
chr16 28878700 28878700 1 + C G BLCA 28878699 + 28878679 28878719 41 TGCTCTTCTATCACAGACGTCCGGACAACCACAGCCCTGGA TGCTCTTCTATCACAGACGTCGGGACAACCACAGCCCTGGA < 41bp 0.432624638000059 0.752535442093362 0.29796404 0.8648813 prediction 0.505070884186725 Functional Gain - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28878699 chr16:28878700 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_107851 0 0 1 0 3 SH2B1 chr16:28878753 5'GT 28878753 Upstream 54bp
chr2 108910250 108910250 1 + C T COAD 108910249 + 108910229 108910269 41 GAGGCCAAACCAGATGATCTCCTCATCTGCACCTACCCTAA GAGGCCAAACCAGATGATCTCTTCATCTGCACCTACCCTAA < 41bp 0.510217019016854 0.762734627043402 0.072037846 0.13811642 prediction 0.505035216053096 Functional Gain - SULT1C2 ENSG00000198203 CDS Human protein_coding chr2:108910249 chr2:108910250 nonsynonymous SNV 0.855 4 22 hm5C_associated_SNPs_107857 0 0 0 0 1 SULT1C2 chr2:108910274 5'GT 108910274 Upstream 25bp
chr22 23637323 23637323 1 + T C COAD 23637321 + 23637301 23637341 41 GGCGAGAGCACGGACAGACTCATGGGGAAGGGCCAGGTCCA GGCGAGAGCACGGACAGACTCACGGGGAAGGGCCAGGTCCA < 41bp 0.522742444767012 0.775252539866996 0.7725233 0.7956047 prediction 0.505020190199968 Functional Gain - BCR ENSG00000186716 CDS Human protein_coding chr22:23637321 chr22:23637323 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_107858 0 0 1 0 1 BCR chr22:23637342 5'GT 23637342 Upstream 20bp
chr2 99169339 99169339 1 + C T LUAD 99169338 + 99169318 99169358 41 CCAGATCAACACCCTGAAAACCCAAGTGAGTTACTACGCAG CCAGATCAACACCCTGAAAACTCAAGTGAGTTACTACGCAG < 41bp 0.525941854715938 0.778450259865086 0.2648108 0.659691 prediction 0.505016810298295 Functional Gain - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99169338 chr2:99169339 synonymous SNV . 0 22 hm5C_associated_SNPs_107860 0 0 1 0 2 INPP4A chr2:99169249 3'AG 99169249 Downstream 91bp
chr2 99169339 99169339 1 + C T LUAD 99169338 + 99169318 99169358 41 CCAGATCAACACCCTGAAAACCCAAGTGAGTTACTACGCAG CCAGATCAACACCCTGAAAACTCAAGTGAGTTACTACGCAG < 41bp 0.525941854715938 0.778450259865086 0.2648108 0.659691 prediction 0.505016810298295 Functional Gain - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99169338 chr2:99169339 synonymous SNV . 0 22 hm5C_associated_SNPs_107860 0 0 1 0 2 INPP4A chr2:99169432 5'GT 99169432 Upstream 94bp
chr22 46671226 46671226 1 + T C STAD 46671224 + 46671204 46671244 41 TGTTGGCCCTGAAATTTTCCCATGATGCTTATTTTTACCTG TGTTGGCCCTGAAATTTTCCCACGATGCTTATTTTTACCTG < 41bp 0.564501359900623 0.817002601406163 0.106040746 0.026004255 prediction 0.505002483011079 Functional Gain - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46671224 chr22:46671226 synonymous SNV . 0 23 hm5C_associated_SNPs_107861 0 0 1 0 2 TTC38 chr22:46671145 3'AG 46671145 Downstream 82bp
chr22 46671226 46671226 1 + T C STAD 46671224 + 46671204 46671244 41 TGTTGGCCCTGAAATTTTCCCATGATGCTTATTTTTACCTG TGTTGGCCCTGAAATTTTCCCACGATGCTTATTTTTACCTG < 41bp 0.564501359900623 0.817002601406163 0.106040746 0.026004255 prediction 0.505002483011079 Functional Gain - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46671224 chr22:46671226 synonymous SNV . 0 23 hm5C_associated_SNPs_107861 0 0 1 0 2 TTC38 chr22:46671318 5'GT 46671318 Upstream 93bp
chr1 40879873 40879873 1 + C T SKCM 40879872 + 40879852 40879892 41 CAGCTACCTCGGAAAAGCTCCCCGAAATCCACAGCGCCTGT CAGCTACCTCGGAAAAGCTCCTCGAAATCCACAGCGCCTGT < 41bp 0.482062171677888 0.752497707375143 0.13048929 0.690806 prediction 0.504995414750286 Functional Gain - SMAP2 ENSG00000084070 CDS Human protein_coding chr1:40879872 chr1:40879873 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_107862 0 0 1 0 2 SMAP2 chr1:40879831 3'AG 40879831 Downstream 43bp
chr1 40879873 40879873 1 + C T SKCM 40879872 + 40879852 40879892 41 CAGCTACCTCGGAAAAGCTCCCCGAAATCCACAGCGCCTGT CAGCTACCTCGGAAAAGCTCCTCGAAATCCACAGCGCCTGT < 41bp 0.482062171677888 0.752497707375143 0.13048929 0.690806 prediction 0.504995414750286 Functional Gain - SMAP2 ENSG00000084070 CDS Human protein_coding chr1:40879872 chr1:40879873 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_107862 0 0 1 0 2 SMAP2 chr1:40879912 5'GT 40879912 Upstream 40bp
chr12 122405975 122405975 1 + C T SKCM 122405974 + 122405954 122405994 41 ACATCTGCTATTGTTTGCCACCCGAACGGGGTGGCCGGCAT ACATCTGCTATTGTTTGCCACTCGAACGGGGTGGCCGGCAT < 41bp 0.483936837820382 0.752493606971446 0.07451898 0.93029916 prediction 0.504987213942893 Functional Gain - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122405974 chr12:122405975 nonsynonymous SNV 0.255 3 22 hm5C_associated_SNPs_107863 0 0 0 0 1 WDR66 chr12:122405912 3'AG 122405912 Downstream 64bp
chr19 57999333 57999333 1 + C G rs113628862 57999332 + 57999312 57999352 41 GGCTCCGATGGCGGCGGCCGCCCTGAGGGACCCCGCTCAGG GGCTCCGATGGCGGCGGCCGCGCTGAGGGACCCCGCTCAGG < 41bp 0.456475835849824 0.752485775321464 0.15168151 0.33130902 prediction 0.504971550642928 Functional Gain - ZNF419 ENSG00000105136;ENSG00000268107 CDS Human other chr19:57999332 chr19:57999333 synonymous SNV . 0 22 hm5C_associated_SNPs_107866 0 0 1 0 1 ZNF419 chr19:57999351 5'GT 57999351 Upstream 19bp
chr7 72301284 72301284 1 + T C rs138480824 72301282 + 72301262 72301302 41 CCCTCACAAGGGAAAAAGACCTTGATGAAGTTCTGCAGACC CCCTCACAAGGGAAAAAGACCTCGATGAAGTTCTGCAGACC < 41bp 0.488839247329243 0.752452739298897 0.17302674 0.4624551 prediction 0.504905478597794 Functional Gain - SBDSP1 ENSG00000225648 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:72301282 chr7:72301284 . . 0 23 hm5C_associated_SNPs_107871 0 0 1 0 1 SBDSP1 chr7:72301272 3'AG 72301272 Downstream 13bp
chr9 104079699 104079699 1 + C T SKCM 104079698 + 104079678 104079718 41 CGCAAGGATCTCCTTCCAAACCCAAGCCTGAGGATCCCCGT CGCAAGGATCTCCTTCCAAACTCAAGCCTGAGGATCCCCGT < 41bp 0.531413064444167 0.783855870726423 0.052444905 0.07273775 prediction 0.50488561256451 Functional Gain - PLPPR1 ENSG00000148123 CDS Human protein_coding chr9:104079698 chr9:104079699 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_107872 0 0 0 0 2 PLPPR1 chr9:104079647 3'AG 104079647 Downstream 53bp
chr9 104079699 104079699 1 + C T SKCM 104079698 + 104079678 104079718 41 CGCAAGGATCTCCTTCCAAACCCAAGCCTGAGGATCCCCGT CGCAAGGATCTCCTTCCAAACTCAAGCCTGAGGATCCCCGT < 41bp 0.531413064444167 0.783855870726423 0.052444905 0.07273775 prediction 0.50488561256451 Functional Gain - PLPPR1 ENSG00000148123 CDS Human protein_coding chr9:104079698 chr9:104079699 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_107872 0 0 0 0 2 PLPPR1 chr9:104079778 5'GT 104079778 Upstream 80bp
chr1 28599254 28599254 1 + C T SKCM 28599253 + 28599233 28599273 41 GCCCCCCAGGCACCTACACCCCCTAGTGAACAGAGCAGCCC GCCCCCCAGGCACCTACACCCTCTAGTGAACAGAGCAGCCC < 41bp 0.534033087678681 0.786473400074852 0.009419769 0.827762 prediction 0.504880624792343 Functional Gain - SESN2 ENSG00000130766 CDS Human protein_coding chr1:28599253 chr1:28599254 nonsynonymous SNV 0.874 0 22 hm5C_associated_SNPs_107873 0 0 1 0 1 SESN2 chr1:28599304 5'GT 28599304 Upstream 51bp
chr19 55899415 55899415 1 + T C ESCA 55899413 + 55899393 55899433 41 AAGTACCGCCCCGACCTGCGCATGGTGAGCTGGGGTTTGGG AAGTACCGCCCCGACCTGCGCACGGTGAGCTGGGGTTTGGG < 41bp 0.496313066248662 0.752434414058902 0.41057217 0.25429255 prediction 0.504868828117803 Functional Gain - RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899413 chr19:55899415 nonsynonymous SNV 0.815 3 23 hm5C_associated_SNPs_107874 0 0 1 0 1 RPL28 chr19:55899416 5'GT 55899416 Upstream 2bp
chr2 234235820 234235820 1 + C G rs2304773 234235819 + 234235799 234235839 41 CGCCACAGACAGCACCGATGCCGAAGAGGACAAAATCCCCA CGCCACAGACAGCACCGATGCGGAAGAGGACAAAATCCCCA < 41bp 0.605537067601055 0.857971431288877 0.14775273 0.528179 prediction 0.504868727375642 Functional Gain - SAG ENSG00000130561 CDS Human protein_coding chr2:234235819 chr2:234235820 synonymous SNV . 0 22 hm5C_associated_SNPs_107875 0 0 0 0 2 SAG chr2:234235767 3'AG 234235767 Downstream 54bp
chr2 234235820 234235820 1 + C G rs2304773 234235819 + 234235799 234235839 41 CGCCACAGACAGCACCGATGCCGAAGAGGACAAAATCCCCA CGCCACAGACAGCACCGATGCGGAAGAGGACAAAATCCCCA < 41bp 0.605537067601055 0.857971431288877 0.14775273 0.528179 prediction 0.504868727375642 Functional Gain - SAG ENSG00000130561 CDS Human protein_coding chr2:234235819 chr2:234235820 synonymous SNV . 0 22 hm5C_associated_SNPs_107875 0 0 0 0 2 SAG chr2:234235843 5'GT 234235843 Upstream 24bp
chr16 68108047 68108047 1 + C T SKCM 68108046 + 68108026 68108066 41 GCTCCATGCTGCCCAGTCTTCCCGGGAAATTTGGTAAGAGG GCTCCATGCTGCCCAGTCTTCTCGGGAAATTTGGTAAGAGG < 41bp 0.505180640972397 0.757605276441369 0.8059978 0.38970944 prediction 0.504849270937943 Functional Gain - DUS2 ENSG00000167264 CDS Human protein_coding chr16:68108046 chr16:68108047 synonymous SNV . 0 22 hm5C_associated_SNPs_107876 0 0 0 0 1 DUS2 chr16:68108058 5'GT 68108058 Upstream 12bp
chr12 96653588 96653588 1 + C A BRCA 96653587 + 96653567 96653607 41 GCAGCCTTAGTCCAGTTGCTCCGCTGAGTCCTGCCAGGCTG GCAGCCTTAGTCCAGTTGCTCAGCTGAGTCCTGCCAGGCTG < 41bp 0.520037390416592 0.7724430648449 0.05561644 0.5320569 prediction 0.504811348856616 Functional Gain - ELK3 ENSG00000111145 CDS Human protein_coding chr12:96653587 chr12:96653588 nonsynonymous SNV 0.083 4 22 hm5C_associated_SNPs_107880 0 0 0 0 2 ELK3 chr12:96653509 3'AG 96653509 Downstream 80bp
chr12 96653588 96653588 1 + C A BRCA 96653587 + 96653567 96653607 41 GCAGCCTTAGTCCAGTTGCTCCGCTGAGTCCTGCCAGGCTG GCAGCCTTAGTCCAGTTGCTCAGCTGAGTCCTGCCAGGCTG < 41bp 0.520037390416592 0.7724430648449 0.05561644 0.5320569 prediction 0.504811348856616 Functional Gain - ELK3 ENSG00000111145 CDS Human protein_coding chr12:96653587 chr12:96653588 nonsynonymous SNV 0.083 4 22 hm5C_associated_SNPs_107880 0 0 0 0 2 ELK3 chr12:96653631 5'GT 96653631 Upstream 44bp
chr16 70500097 70500097 1 + C A UCEC 70500096 + 70500076 70500116 41 CTGCCTCCCCGTGGAGAACCCCGAGGCCCCCGTGGAAGCCT CTGCCTCCCCGTGGAGAACCCAGAGGCCCCCGTGGAAGCCT < 41bp 0.519114595056794 0.771519403829291 0.59513915 0.84485996 prediction 0.504809617544995 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70500096 chr16:70500097 synonymous SNV . 0 22 hm5C_associated_SNPs_107881 0 0 1 0 1 FUK chr16:70500160 5'GT 70500160 Upstream 64bp
chr5 178293284 178293284 1 + T C rs567321883 178293282 + 178293262 178293302 41 GGACGTGGCTGTGCTCTTTACCTGGGATGAGTGGAGAAAGC GGACGTGGCTGTGCTCTTTACCCGGGATGAGTGGAGAAAGC < 41bp 0.526111027374413 0.778513033455611 0.75203294 0.9213813 prediction 0.504804012162395 Functional Gain - ZNF354B ENSG00000178338 CDS Human protein_coding chr5:178293282 chr5:178293284 nonsynonymous SNV 0.116 0 23 hm5C_associated_SNPs_107882 0 0 1 0 2 ZNF354B chr5:178293245 3'AG 178293245 Downstream 40bp
chr5 178293284 178293284 1 + T C rs567321883 178293282 + 178293262 178293302 41 GGACGTGGCTGTGCTCTTTACCTGGGATGAGTGGAGAAAGC GGACGTGGCTGTGCTCTTTACCCGGGATGAGTGGAGAAAGC < 41bp 0.526111027374413 0.778513033455611 0.75203294 0.9213813 prediction 0.504804012162395 Functional Gain - ZNF354B ENSG00000178338 CDS Human protein_coding chr5:178293282 chr5:178293284 nonsynonymous SNV 0.116 0 23 hm5C_associated_SNPs_107882 0 0 1 0 2 ZNF354B chr5:178293371 5'GT 178293371 Upstream 88bp
chr3 73024219 73024219 1 + C G LUSC 73024218 + 73024198 73024238 41 ACACTTTATGTGGACGAATCCCGCAAGTTTTTCTGAAGCAA ACACTTTATGTGGACGAATCCGGCAAGTTTTTCTGAAGCAA < 41bp 0.447372390094668 0.75240003816016 0.17643726 0.78920496 prediction 0.50480007632032 Functional Gain - GXYLT2 ENSG00000172986 CDS Human protein_coding chr3:73024218 chr3:73024219 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_107883 0 0 1 0 1 GXYLT2 chr3:73024128 3'AG 73024128 Downstream 92bp
chr19 35753487 35753487 1 + C G OV 35753486 + 35753466 35753506 41 GTGGTATGCCTGGCTGCCTTCCTCATCTTCCTCCTCCTGGG GTGGTATGCCTGGCTGCCTTCGTCATCTTCCTCCTCCTGGG < 41bp 0.432914177306181 0.752393482961327 0.12864637 0.14932266 prediction 0.504786965922654 Functional Gain - LSR ENSG00000105699 CDS Human protein_coding chr19:35753486 chr19:35753487 nonsynonymous SNV 0.880 3 22 hm5C_associated_SNPs_107884 0 0 1 0 1 LSR chr19:35753449 3'AG 35753449 Downstream 39bp
chr1 177247763 177247763 1 + C T BLCA 177247762 + 177247742 177247782 41 CCTGAACTCCACAGCTATCTCCCAGTTCTGGGCCATGGACA CCTGAACTCCACAGCTATCTCTCAGTTCTGGGCCATGGACA < 41bp 0.51546600276445 0.767853651968195 0.07737544 0.086375505 prediction 0.50477529840749 Functional Gain - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177247762 chr1:177247763 synonymous SNV . 0 22 hm5C_associated_SNPs_107887 0 0 0 0 1 BRINP2 chr1:177247699 3'AG 177247699 Downstream 65bp
chr14 97321568 97321568 1 + T C GBM 97321566 + 97321546 97321586 41 CTTGGAAATTTATAGGTGTACTTGGTAGATTATGGCCTTGC CTTGGAAATTTATAGGTGTACTCGGTAGATTATGGCCTTGC < 41bp 0.477096880593068 0.75237804639442 0.3079744 0.31517684 prediction 0.504756092788841 Functional Gain - VRK1 ENSG00000100749 CDS Human protein_coding chr14:97321566 chr14:97321568 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_107888 0 0 1 0 1 VRK1 chr14:97321561 3'AG 97321561 Downstream 8bp
chr10 134218210 134218210 1 + C A rs539073500 134218206 + 134218186 134218226 41 CTGTCAACGACAGCCATGGCCGGGCTCCCGAGGAGGGGGAT CTGTCAACGACAGCCATGGCCGGGATCCCGAGGAGGGGGAT < 41bp 0.652285296699693 0.904651828812563 0.9108609 0.91227144 prediction 0.504733064225741 Functional Gain - PWWP2B ENSG00000171813 CDS Human protein_coding chr10:134218206 chr10:134218210 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_107889 0 0 1 0 1 PWWP2B chr10:134218130 3'AG 134218130 Downstream 81bp
chr9 95872979 95872979 1 + C G LUSC 95872975 + 95872955 95872995 41 ATCCATGCCCAGCCCCTGCACAGCCGCCTGCCCAGCCGCCA ATCCATGCCCAGCCCCTGCACAGCGGCCTGCCCAGCCGCCA < 41bp 0.582432573318179 0.834785783386213 0.24006844 0.71351814 prediction 0.504706420136067 Functional Gain - CARD19 ENSG00000165233 CDS Human protein_coding chr9:95872975 chr9:95872979 nonsynonymous SNV 0.423 0 25 hm5C_associated_SNPs_107891 0 0 1 0 1 CARD19 chr9:95873003 5'GT 95873003 Upstream 25bp
chr16 10995377 10995377 1 + C A HNSC 10995376 + 10995356 10995396 41 ATGTTTTCTCTGCAGCCTTCCCAGAGGAGCTTCCGGCAGAC ATGTTTTCTCTGCAGCCTTCCAAGAGGAGCTTCCGGCAGAC < 41bp 0.506425382488481 0.758765643954819 0.5526931 0.682179 prediction 0.504680522932676 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:10995376 chr16:10995377 nonsynonymous SNV 0.945 3 22 hm5C_associated_SNPs_107892 0 0 0 0 2 CIITA chr16:10995371 3'AG 10995371 Downstream 7bp
chr16 10995377 10995377 1 + C A HNSC 10995376 + 10995356 10995396 41 ATGTTTTCTCTGCAGCCTTCCCAGAGGAGCTTCCGGCAGAC ATGTTTTCTCTGCAGCCTTCCAAGAGGAGCTTCCGGCAGAC < 41bp 0.506425382488481 0.758765643954819 0.5526931 0.682179 prediction 0.504680522932676 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:10995376 chr16:10995377 nonsynonymous SNV 0.945 3 22 hm5C_associated_SNPs_107892 0 0 0 0 2 CIITA chr16:10995415 5'GT 10995415 Upstream 39bp
chr5 79366562 79366562 1 + C A UCEC 79366561 + 79366541 79366581 41 GATGCTGACGGAGATGGGATCCTGAATGAGCAGGTACCTGC GATGCTGACGGAGATGGGATCATGAATGAGCAGGTACCTGC < 41bp 0.525600233457357 0.777936318475226 0.22912174 0.33357567 prediction 0.504672170035738 Functional Gain - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79366561 chr5:79366562 nonsynonymous SNV 0.991 1 22 hm5C_associated_SNPs_107895 0 0 0 0 2 THBS4 chr5:79366466 3'AG 79366466 Downstream 97bp
chr5 79366562 79366562 1 + C A UCEC 79366561 + 79366541 79366581 41 GATGCTGACGGAGATGGGATCCTGAATGAGCAGGTACCTGC GATGCTGACGGAGATGGGATCATGAATGAGCAGGTACCTGC < 41bp 0.525600233457357 0.777936318475226 0.22912174 0.33357567 prediction 0.504672170035738 Functional Gain - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79366561 chr5:79366562 nonsynonymous SNV 0.991 1 22 hm5C_associated_SNPs_107895 0 0 0 0 2 THBS4 chr5:79366573 5'GT 79366573 Upstream 12bp
chr20 30358241 30358241 1 + T C OV 30358239 + 30358219 30358259 41 AGATGTGCCACTCCTGTAATCATCGATGAAATTCTACCCTC AGATGTGCCACTCCTGTAATCACCGATGAAATTCTACCCTC < 41bp 0.520173643701746 0.772500710012186 0.33727482 0.4233619 prediction 0.50465413262088 Functional Gain - TPX2 ENSG00000088325 CDS Human protein_coding chr20:30358239 chr20:30358241 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_107897 0 0 1 0 1 TPX2 chr20:30358146 3'AG 30358146 Downstream 96bp
chr20 31889103 31889103 1 + C A COAD 31889099 + 31889079 31889119 41 TCAATAACTCTGCAGCTTCCCTGACAATGCCCACCCTGGAC TCAATAACTCTGCAGCTTCCCTGAAAATGCCCACCCTGGAC < 41bp 0.329512240130863 0.752298609797128 0.032040417 0.09219462 prediction 0.504597219594255 Functional Gain - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31889099 chr20:31889103 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_107901 0 0 0 0 1 BPIFB1 chr20:31889039 3'AG 31889039 Downstream 65bp
chr4 1374774 1374774 1 + C G rs28522910 1374770 + 1374750 1374790 41 GGCAGCTGCAGAAGCAGGAGCGCCCGGGTAGGTCTGGGCAA GGCAGCTGCAGAAGCAGGAGCGCCGGGGTAGGTCTGGGCAA < 41bp 0.548072611575253 0.800363998867558 0.6090539 0.8156955 prediction 0.50458277458461 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1374770 chr4:1374774 nonsynonymous SNV 0.008 2 25 hm5C_associated_SNPs_107903 0 0 1 0 1 UVSSA chr4:1374776 5'GT 1374776 Upstream 3bp
chr4 5529187 5529187 1 + C A rs77138388 5529183 + 5529163 5529203 41 GGATGAAAGGCTGCCTTTTCCCCCCCTTCTGAGCGTTTCTG GGATGAAAGGCTGCCTTTTCCCCCACTTCTGAGCGTTTCTG < 41bp 0.37479977182985 0.752277542433666 0.1381729 0.1499224 prediction 0.504555084867333 Functional Gain - LINC01587 ENSG00000082929 UTR3 Human processed_transcript chr4:5529183 chr4:5529187 . . 0 25 hm5C_associated_SNPs_107905 0 0 0 0 1 LINC01587 chr4:5529115 3'AG 5529115 Downstream 73bp
chr7 99689103 99689103 1 + C G SKCM 99689099 + 99689079 99689119 41 CCTATGCTCTGTGTCACTGTCTCCCGGTGCTCAGCACAGAC CCTATGCTCTGTGTCACTGTCTCCGGGTGCTCAGCACAGAC < 41bp 0.541929223899607 0.794198080316652 0.22974116 0.5655411 prediction 0.50453771283409 Functional Gain - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99689099 chr7:99689103 nonsynonymous SNV 0.886 4 25 hm5C_associated_SNPs_107906 0 0 1 0 2 COPS6 chr7:99689043 3'AG 99689043 Downstream 61bp
chr7 99689103 99689103 1 + C G SKCM 99689099 + 99689079 99689119 41 CCTATGCTCTGTGTCACTGTCTCCCGGTGCTCAGCACAGAC CCTATGCTCTGTGTCACTGTCTCCGGGTGCTCAGCACAGAC < 41bp 0.541929223899607 0.794198080316652 0.22974116 0.5655411 prediction 0.50453771283409 Functional Gain - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99689099 chr7:99689103 nonsynonymous SNV 0.886 4 25 hm5C_associated_SNPs_107906 0 0 1 0 2 COPS6 chr7:99689143 5'GT 99689143 Upstream 41bp
chr11 64853932 64853932 1 + C T SKCM 64853931 + 64853911 64853951 41 ATGAACGTGCTGCCCAGCTACCCCGAAACACGGCACCTGCC ATGAACGTGCTGCCCAGCTACTCCGAAACACGGCACCTGCC < 41bp 0.532304650867887 0.784567379835479 0.22850159 0.47430995 prediction 0.504525457935183 Functional Gain - ZFPL1 ENSG00000162300 CDS Human protein_coding chr11:64853931 chr11:64853932 nonsynonymous SNV 0.995 5 22 hm5C_associated_SNPs_107907 0 0 1 0 1 ZFPL1 chr11:64853887 3'AG 64853887 Downstream 46bp
chr14 89069204 89069204 1 + C T UCEC 89069203 + 89069183 89069223 41 AACCAGATAAACCTGCAAGTCCCAAGTTTATAGTGACGCTG AACCAGATAAACCTGCAAGTCTCAAGTTTATAGTGACGCTG < 41bp 0.510709250237812 0.76296986731944 0.41543806 0.713051 prediction 0.504521234163255 Functional Gain - ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89069203 chr14:89069204 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_107908 0 0 1 0 1 ZC3H14 chr14:89069172 3'AG 89069172 Downstream 33bp
chr6 31379068 31379068 1 + C A UCEC 31379064 + 31379044 31379084 41 TGAAGACCAAGACACACTATCACGCTATGCATGCAGACTGC TGAAGACCAAGACACACTATCACGATATGCATGCAGACTGC < 41bp 0.409115786899503 0.752252441733768 0.21742669 0.42615202 prediction 0.504504883467536 Functional Gain - MICA ENSG00000204520 CDS Human protein_coding chr6:31379064 chr6:31379068 nonsynonymous SNV 0.000 3 25 hm5C_associated_SNPs_107910 0 0 1 0 2 MICA chr6:31379021 3'AG 31379021 Downstream 48bp
chr6 31379068 31379068 1 + C A UCEC 31379064 + 31379044 31379084 41 TGAAGACCAAGACACACTATCACGCTATGCATGCAGACTGC TGAAGACCAAGACACACTATCACGATATGCATGCAGACTGC < 41bp 0.409115786899503 0.752252441733768 0.21742669 0.42615202 prediction 0.504504883467536 Functional Gain - MICA ENSG00000204520 CDS Human protein_coding chr6:31379064 chr6:31379068 nonsynonymous SNV 0.000 3 25 hm5C_associated_SNPs_107910 0 0 1 0 2 MICA chr6:31379136 5'GT 31379136 Upstream 69bp
chr12 101381432 101381432 1 + C A HNSC 101381428 + 101381408 101381448 41 GACTGCTACACTGCCCCTTTCAGCCAGCAAAGGATCCATCA GACTGCTACACTGCCCCTTTCAGCAAGCAAAGGATCCATCA < 41bp 0.337746672256163 0.752247061924237 0.77795136 0.86937374 prediction 0.504494123848474 Functional Gain - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101381428 chr12:101381432 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_107912 0 0 0 1 1 ANO4 chr12:101381448 5'GT 101381448 Upstream 17bp
chr14 100795375 100795375 1 + C G rs149283899 100795371 + 100795351 100795391 41 TGGCTCAGCCCCGCTGGCCACAGCCGGCCAGGTGAGCAGGG TGGCTCAGCCCCGCTGGCCACAGCGGGCCAGGTGAGCAGGG < 41bp 0.565178440009208 0.81741711407823 0.9098635 0.9089111 prediction 0.504477348138044 Functional Gain - SLC25A47 ENSG00000140107 CDS Human protein_coding chr14:100795371 chr14:100795375 nonsynonymous SNV 0.574 0 25 hm5C_associated_SNPs_107914 0 0 0 0 1 SLC25A47 chr14:100795381 5'GT 100795381 Upstream 7bp
chr8 125072475 125072475 1 + C A LUSC 125072474 + 125072454 125072494 41 GTTGAGCCACCAGACATCACCCAGATCTACCCGGTTCCTGC GTTGAGCCACCAGACATCACCAAGATCTACCCGGTTCCTGC < 41bp 0.498540265131049 0.752234549309051 0.14625403 0.21501625 prediction 0.504469098618102 Functional Gain - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:125072474 chr8:125072475 nonsynonymous SNV 0.826 0 22 hm5C_associated_SNPs_107915 0 0 0 0 2 FER1L6 chr8:125072421 3'AG 125072421 Downstream 55bp
chr8 125072475 125072475 1 + C A LUSC 125072474 + 125072454 125072494 41 GTTGAGCCACCAGACATCACCCAGATCTACCCGGTTCCTGC GTTGAGCCACCAGACATCACCAAGATCTACCCGGTTCCTGC < 41bp 0.498540265131049 0.752234549309051 0.14625403 0.21501625 prediction 0.504469098618102 Functional Gain - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:125072474 chr8:125072475 nonsynonymous SNV 0.826 0 22 hm5C_associated_SNPs_107915 0 0 0 0 2 FER1L6 chr8:125072531 5'GT 125072531 Upstream 57bp
chr16 30199278 30199278 1 + C A COAD 30199277 + 30199257 30199297 41 CTACAGGGTGACAGCTCAATCCGGTACTTTGAGATCACTTC CTACAGGGTGACAGCTCAATCAGGTACTTTGAGATCACTTC < 41bp 0.538675504493063 0.790897194312296 0.70692235 0.91867864 prediction 0.504443379638466 Functional Gain - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30199277 chr16:30199278 synonymous SNV . 0 22 hm5C_associated_SNPs_107919 0 0 0 0 1 CORO1A chr16:30199263 3'AG 30199263 Downstream 16bp
chr5 131670586 131670586 1 - G A SKCM 131670587 - 131670567 131670607 41 TGAAGAGAAGCACACCTCCTCCCCAGAACAGTACTGCAGCT TGAAGAGAAGCACACCTCCTCTCCAGAACAGTACTGCAGCT < 41bp 0.518443552393291 0.770660640466463 0.0713141 0.9441602 prediction 0.504434176146345 Functional Gain - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131670587 chr5:131670586 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_107920 0 0 0 0 1 SLC22A4 chr5:131670619 3'AG 131670619 Downstream 34bp
chr8 90933391 90933391 1 + T A LAML 90933387 + 90933367 90933407 41 TAAATTTAAGGACTGGGTATCAAGTAAACGAAGGTAAAGAT TAAATTTAAGGACTGGGTATCAAGAAAACGAAGGTAAAGAT < 41bp 0.439629013502014 0.752205412732323 0.40284002 0.86154926 prediction 0.504410825464647 Functional Gain - OSGIN2 ENSG00000164823 CDS Human protein_coding chr8:90933387 chr8:90933391 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_107922 0 0 1 0 2 OSGIN2 chr8:90933308 3'AG 90933308 Downstream 84bp
chr8 90933391 90933391 1 + T A LAML 90933387 + 90933367 90933407 41 TAAATTTAAGGACTGGGTATCAAGTAAACGAAGGTAAAGAT TAAATTTAAGGACTGGGTATCAAGAAAACGAAGGTAAAGAT < 41bp 0.439629013502014 0.752205412732323 0.40284002 0.86154926 prediction 0.504410825464647 Functional Gain - OSGIN2 ENSG00000164823 CDS Human protein_coding chr8:90933387 chr8:90933391 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_107922 0 0 1 0 2 OSGIN2 chr8:90933399 5'GT 90933399 Upstream 9bp
chr5 71616321 71616321 1 + C G OV 71616317 + 71616297 71616337 41 GGAGGCTCCGGCTCTGTCAGCTGCCGCTGCCCTCTCGGAGG GGAGGCTCCGGCTCTGTCAGCTGCGGCTGCCCTCTCGGAGG < 41bp 0.582764188329218 0.834964663643115 0.5479069 0.8129606 prediction 0.504400950627793 Functional Gain - PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71616317 chr5:71616321 nonsynonymous SNV 0.782 0 25 hm5C_associated_SNPs_107923 0 0 0 0 1 PTCD2 chr5:71616336 5'GT 71616336 Upstream 16bp
chr21 47409530 47409530 1 + C G SKCM 47409529 + 47409509 47409549 41 TCCTGTGTTCCAGGGAAGACCCGGGGACCTCGGACCTGTTG TCCTGTGTTCCAGGGAAGACCGGGGGACCTCGGACCTGTTG < 41bp 0.610695999448081 0.862893406988047 0.92184126 0.94366336 prediction 0.50439481507993 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47409529 chr21:47409530 synonymous SNV . 0 22 hm5C_associated_SNPs_107924 0 0 1 0 2 COL6A1 chr21:47409522 3'AG 47409522 Downstream 9bp
chr21 47409530 47409530 1 + C G SKCM 47409529 + 47409509 47409549 41 TCCTGTGTTCCAGGGAAGACCCGGGGACCTCGGACCTGTTG TCCTGTGTTCCAGGGAAGACCGGGGGACCTCGGACCTGTTG < 41bp 0.610695999448081 0.862893406988047 0.92184126 0.94366336 prediction 0.50439481507993 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47409529 chr21:47409530 synonymous SNV . 0 22 hm5C_associated_SNPs_107924 0 0 1 0 2 COL6A1 chr21:47409566 5'GT 47409566 Upstream 37bp
chr3 44929214 44929214 1 + T A LUAD 44929210 + 44929190 44929230 41 CTAGCATCGCCAAACACACCCTGGTGGTGCTCGACCCGAGG CTAGCATCGCCAAACACACCCTGGAGGTGCTCGACCCGAGG < 41bp 0.595954638576125 0.848151251941915 0.34044272 0.69329673 prediction 0.504393226731579 Functional Gain - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44929210 chr3:44929214 nonsynonymous SNV 0.238 3 25 hm5C_associated_SNPs_107925 0 0 0 0 2 TGM4 chr3:44929181 3'AG 44929181 Downstream 34bp
chr3 44929214 44929214 1 + T A LUAD 44929210 + 44929190 44929230 41 CTAGCATCGCCAAACACACCCTGGTGGTGCTCGACCCGAGG CTAGCATCGCCAAACACACCCTGGAGGTGCTCGACCCGAGG < 41bp 0.595954638576125 0.848151251941915 0.34044272 0.69329673 prediction 0.504393226731579 Functional Gain - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44929210 chr3:44929214 nonsynonymous SNV 0.238 3 25 hm5C_associated_SNPs_107925 0 0 0 0 2 TGM4 chr3:44929287 5'GT 44929287 Upstream 74bp
chr22 20939299 20939299 1 + T C UCEC 20939297 + 20939277 20939317 41 ACCGCCATTCACGGCCCACCCATCACGTATGTCCAGCTGGG ACCGCCATTCACGGCCCACCCACCACGTATGTCCAGCTGGG < 41bp 0.518916707542944 0.771092335557441 0.10042071 0.16733295 prediction 0.504351256028995 Functional Gain - MED15 ENSG00000099917 CDS Human protein_coding chr22:20939297 chr22:20939299 nonsynonymous SNV 0.961 3 23 hm5C_associated_SNPs_107927 0 0 1 0 1 MED15 chr22:20939302 5'GT 20939302 Upstream 4bp
chr15 99874230 99874230 1 + C A UCEC 99874226 + 99874206 99874246 41 TGTGCCTTTCTCTGCAGTACCTCACTGTGGACCGAAATCGT TGTGCCTTTCTCTGCAGTACCTCAATGTGGACCGAAATCGT < 41bp 0.318699427371634 0.752160173037377 0.021891356 0.8376912 prediction 0.504320346074754 Functional Gain - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99874226 chr15:99874230 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_107932 0 0 0 1 1 LRRC28 chr15:99874223 3'AG 99874223 Downstream 8bp
chr4 2901077 2901077 1 + C A UCEC 2901076 + 2901056 2901096 41 AGTCCCGTTCCCCAGGGTCTCCGGTAGGGGAAGGCACTGGA AGTCCCGTTCCCCAGGGTCTCAGGTAGGGGAAGGCACTGGA < 41bp 0.508747003863393 0.760896762040469 0.598567 0.89630735 prediction 0.504299516354152 Functional Gain - ADD1 ENSG00000087274 CDS Human protein_coding chr4:2901076 chr4:2901077 nonsynonymous SNV 0.207 3 22 hm5C_associated_SNPs_107934 0 0 1 0 2 ADD1 chr4:2900986 3'AG 2900986 Downstream 92bp
chr4 2901077 2901077 1 + C A UCEC 2901076 + 2901056 2901096 41 AGTCCCGTTCCCCAGGGTCTCCGGTAGGGGAAGGCACTGGA AGTCCCGTTCCCCAGGGTCTCAGGTAGGGGAAGGCACTGGA < 41bp 0.508747003863393 0.760896762040469 0.598567 0.89630735 prediction 0.504299516354152 Functional Gain - ADD1 ENSG00000087274 CDS Human protein_coding chr4:2901076 chr4:2901077 nonsynonymous SNV 0.207 3 22 hm5C_associated_SNPs_107934 0 0 1 0 2 ADD1 chr4:2901162 5'GT 2901162 Upstream 86bp
chr1 113659009 113659009 1 + T C UCEC 113659007 + 113658987 113659027 41 GCAACTCTGAGGCAGGCAGTCATCAGCAACTTATGCCTCCT GCAACTCTGAGGCAGGCAGTCACCAGCAACTTATGCCTCCT < 41bp 0.577274620806039 0.829413870693864 0.10263708 0.1294502 prediction 0.50427849977565 Functional Gain - LRIG2 ENSG00000198799 CDS Human protein_coding chr1:113659007 chr1:113659009 synonymous SNV . 0 23 hm5C_associated_SNPs_107935 0 0 1 0 1 LRIG2 chr1:113659058 5'GT 113659058 Upstream 50bp
chr19 14578588 14578588 1 + C A ESCA 14578587 + 14578567 14578607 41 AAGTTCCTGGCGGTGCTGGGCCGGGGTCATTTTGGGAAGGT AAGTTCCTGGCGGTGCTGGGCAGGGGTCATTTTGGGAAGGT < 41bp 0.519539832694875 0.771670619803159 0.6487496 0.83836603 prediction 0.504261574216568 Functional Gain - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14578587 chr19:14578588 synonymous SNV . 0 22 hm5C_associated_SNPs_107938 0 0 1 0 2 PKN1 chr19:14578530 3'AG 14578530 Downstream 59bp
chr19 14578588 14578588 1 + C A ESCA 14578587 + 14578567 14578607 41 AAGTTCCTGGCGGTGCTGGGCCGGGGTCATTTTGGGAAGGT AAGTTCCTGGCGGTGCTGGGCAGGGGTCATTTTGGGAAGGT < 41bp 0.519539832694875 0.771670619803159 0.6487496 0.83836603 prediction 0.504261574216568 Functional Gain - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14578587 chr19:14578588 synonymous SNV . 0 22 hm5C_associated_SNPs_107938 0 0 1 0 2 PKN1 chr19:14578605 5'GT 14578605 Upstream 18bp
chr19 2247848 2247848 1 + C A PAAD 2247844 + 2247824 2247864 41 CTGGCCCCCCTGGGGTGAAGCGGCCTCCACCCCCGCTGATG CTGGCCCCCCTGGGGTGAAGCGGCATCCACCCCCGCTGATG < 41bp 0.656241746036616 0.908363736597614 0.6377219 0.86480725 prediction 0.504243981121996 Functional Gain - SF3A2 ENSG00000104897 CDS Human protein_coding chr19:2247844 chr19:2247848 nonsynonymous SNV 0.645 4 25 hm5C_associated_SNPs_107941 0 0 1 0 1 SF3A2 chr19:2247766 3'AG 2247766 Downstream 83bp
chr19 41726681 41726681 1 + C A CESC 41726680 + 41726660 41726700 41 TGGCTTCGGGATGGACAGATCCTGGAGCTCGCGGACAGCAC TGGCTTCGGGATGGACAGATCATGGAGCTCGCGGACAGCAC < 41bp 0.512457174510398 0.764578448743546 0.25082862 0.5248578 prediction 0.504242548466295 Functional Gain - AXL ENSG00000167601 CDS Human protein_coding chr19:41726680 chr19:41726681 nonsynonymous SNV 0.037 4 22 hm5C_associated_SNPs_107942 0 0 0 0 1 AXL chr19:41726763 5'GT 41726763 Upstream 83bp
chr5 68555730 68555730 1 + C G PRAD 68555729 + 68555709 68555749 41 TGGCCAAATCTTTTGGGAGCCCCAATAGAGCTTATACACAT TGGCCAAATCTTTTGGGAGCCGCAATAGAGCTTATACACAT < 41bp 0.45338177566536 0.752105794808514 0.41821176 0.36875248 prediction 0.504211589617028 Functional Gain - CDK7 ENSG00000134058 CDS Human protein_coding chr5:68555729 chr5:68555730 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_107948 0 0 1 0 2 CDK7 chr5:68555645 3'AG 68555645 Downstream 86bp
chr5 68555730 68555730 1 + C G PRAD 68555729 + 68555709 68555749 41 TGGCCAAATCTTTTGGGAGCCCCAATAGAGCTTATACACAT TGGCCAAATCTTTTGGGAGCCGCAATAGAGCTTATACACAT < 41bp 0.45338177566536 0.752105794808514 0.41821176 0.36875248 prediction 0.504211589617028 Functional Gain - CDK7 ENSG00000134058 CDS Human protein_coding chr5:68555729 chr5:68555730 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_107948 0 0 1 0 2 CDK7 chr5:68555763 5'GT 68555763 Upstream 34bp
chr3 15064822 15064822 1 + T A rs2230441 15064818 + 15064798 15064838 41 CCTGAGAAGTCCCCTGATAGCTACTCCCACGTTTGTGGCAG CCTGAGAAGTCCCCTGATAGCTACACCCACGTTTGTGGCAG < 41bp 0.402258902361453 0.752102278341595 0.08881742 0.22085702 prediction 0.50420455668319 Functional Gain - NR2C2 ENSG00000177463 CDS Human protein_coding chr3:15064818 chr3:15064822 synonymous SNV . 0 25 hm5C_associated_SNPs_107949 0 0 1 0 1 NR2C2 chr3:15064854 5'GT 15064854 Upstream 33bp
chr19 35633635 35633635 1 + C G rs61753924 35633634 + 35633614 35633654 41 TTCCCCCCAGGTCTGTCCACCCGCAGGCGGTAGAAACACCT TTCCCCCCAGGTCTGTCCACCGGCAGGCGGTAGAAACACCT < 41bp 0.429323228163384 0.752095505934418 0.019670397 0.26289183 prediction 0.504191011868837 Functional Gain - FXYD1 ENSG00000266964 CDS Human protein_coding chr19:35633634 chr19:35633635 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_107950 0 0 1 0 2 FXYD1 chr19:35633624 3'AG 35633624 Downstream 12bp
chr19 35633635 35633635 1 + C G rs61753924 35633634 + 35633614 35633654 41 TTCCCCCCAGGTCTGTCCACCCGCAGGCGGTAGAAACACCT TTCCCCCCAGGTCTGTCCACCGGCAGGCGGTAGAAACACCT < 41bp 0.429323228163384 0.752095505934418 0.019670397 0.26289183 prediction 0.504191011868837 Functional Gain - FXYD1 ENSG00000266964 CDS Human processed_transcript chr19:35633634 chr19:35633635 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_107950 0 0 1 0 2 FXYD1 chr19:35633675 5'GT 35633675 Upstream 41bp
chr12 131687328 131687328 1 + C G rs139397384 131687327 + 131687307 131687347 41 CATTTTCAGGTGAGGGACGGCCGGTGTCATCGTTGGAGCTT CATTTTCAGGTGAGGGACGGCGGGTGTCATCGTTGGAGCTT < 41bp 0.460205149778409 0.752080724045794 0.7943009 0.91321707 prediction 0.504161448091588 Functional Gain - LINC01257 ENSG00000204603 ncRNA_exonic Human lincRNA chr12:131687327 chr12:131687328 . . 0 22 hm5C_associated_SNPs_107952 0 0 0 0 1 LINC01257 chr12:131687316 3'AG 131687316 Downstream 13bp
chrX 48340877 48340877 1 + C T COAD 48340876 + 48340856 48340896 41 CTGAGCTCCTATGATTCGGACCGCAGTTACCCACTGGACGT CTGAGCTCCTATGATTCGGACTGCAGTTACCCACTGGACGT < 41bp 0.502966415794981 0.755002502510259 0.21878597 0.16019452 prediction 0.504072173430555 Functional Gain - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48340876 chrX:48340877 nonsynonymous SNV 0.858 0 22 hm5C_associated_SNPs_107962 1 0 1 0 3 FTSJ1 chrX:48340791 3'AG 48340791 Downstream 87bp
chrX 48340877 48340877 1 + C T COAD 48340876 + 48340856 48340896 41 CTGAGCTCCTATGATTCGGACCGCAGTTACCCACTGGACGT CTGAGCTCCTATGATTCGGACTGCAGTTACCCACTGGACGT < 41bp 0.502966415794981 0.755002502510259 0.21878597 0.16019452 prediction 0.504072173430555 Functional Gain - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48340876 chrX:48340877 nonsynonymous SNV 0.858 0 22 hm5C_associated_SNPs_107962 1 0 1 0 3 FTSJ1 chrX:48340797 3'AG 48340797 Downstream 81bp
chrX 48340877 48340877 1 + C T COAD 48340876 + 48340856 48340896 41 CTGAGCTCCTATGATTCGGACCGCAGTTACCCACTGGACGT CTGAGCTCCTATGATTCGGACTGCAGTTACCCACTGGACGT < 41bp 0.502966415794981 0.755002502510259 0.21878597 0.16019452 prediction 0.504072173430555 Functional Gain - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48340876 chrX:48340877 nonsynonymous SNV 0.858 0 22 hm5C_associated_SNPs_107962 1 0 1 0 3 FTSJ1 chrX:48340894 5'GT 48340894 Upstream 18bp
chr1 12854133 12854133 1 + C A LUSC 12854132 + 12854112 12854152 41 CTGGGCCAGATGGCCTGGAGCCTGGGCCCTGTCCTGCTTCC CTGGGCCAGATGGCCTGGAGCATGGGCCCTGTCCTGCTTCC < 41bp 0.509834710140821 0.761859372396898 0.8155399 0.77709734 prediction 0.504049324512154 Functional Gain - PRAMEF1 ENSG00000116721 CDS Human protein_coding chr1:12854132 chr1:12854133 synonymous SNV . 0 22 hm5C_associated_SNPs_107963 0 0 0 0 1 PRAMEF1 chr1:12854064 3'AG 12854064 Downstream 70bp
chr10 38499714 38499714 1 + T C UCEC 38499712 + 38499692 38499732 41 TGTATTCGCTAGTTTATCTTCTTGACAGAGAAAGAGCATGG TGTATTCGCTAGTTTATCTTCTCGACAGAGAAAGAGCATGG < 41bp 0.517688836618068 0.769695226936149 0.060762644 0.24135426 prediction 0.50401278063616 Functional Gain - LOC100129055 ENSG00000224761 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38499712 chr10:38499714 . . 0 23 hm5C_associated_SNPs_107967 0 0 0 0 1 LOC100129055 chr10:38499741 5'GT 38499741 Upstream 28bp
chr16 4382440 4382440 1 + C G PAAD 4382436 + 4382416 4382456 41 CAGCCCCACACCTGGCTCTCCAGGCTCCCCGCCCTCAGGTA CAGCCCCACACCTGGCTCTCCAGGGTCCCCGCCCTCAGGTA < 41bp 0.570987165793527 0.822969559320253 0.92743033 0.9305328 prediction 0.503964787053452 Functional Gain - GLIS2 ENSG00000126603 CDS Human protein_coding chr16:4382436 chr16:4382440 synonymous SNV . 0 25 hm5C_associated_SNPs_107971 0 0 0 0 1 GLIS2 chr16:4382453 5'GT 4382453 Upstream 14bp
chr20 34487474 34487474 1 + C T SKCM 34487473 + 34487453 34487493 41 TCACTGGAGCCAGAAGAGAGCCCGGGAAAGAGGCATGTCCA TCACTGGAGCCAGAAGAGAGCTCGGGAAAGAGGCATGTCCA < 41bp 0.501239305891405 0.753206416635121 0.6745042 0.49750674 prediction 0.503934221487431 Functional Gain - PHF20 ENSG00000025293 CDS Human protein_coding chr20:34487473 chr20:34487474 nonsynonymous SNV 0.976 0 22 hm5C_associated_SNPs_107973 0 0 1 0 1 PHF20 chr20:34487570 5'GT 34487570 Upstream 97bp
chr16 1578782 1578782 1 + C G rs549157048 1578781 + 1578761 1578801 41 GACCAGCCGCCCACAGAGCCCCGAGCCCGTGGTCCCGGTGA GACCAGCCGCCCACAGAGCCCGGAGCCCGTGGTCCCGGTGA < 41bp 0.56780708038926 0.819773928039114 0.271875 0.82649577 prediction 0.503933695299708 Functional Gain - TMEM204 ENSG00000131634 UTR5 Human protein_coding chr16:1578781 chr16:1578782 . . 0 22 hm5C_associated_SNPs_107974 0 0 0 0 1 TMEM204 chr16:1578797 5'GT 1578797 Upstream 16bp
chr10 89624228 89624228 1 + T C COAD 89624226 + 89624206 89624246 41 TTCAGCCACAGGCTCCCAGACATGACAGCCATCATCAAAGA TTCAGCCACAGGCTCCCAGACACGACAGCCATCATCAAAGA < 41bp 0.523032162811321 0.774966026106226 0.06020102 0.050652474 prediction 0.503867726589811 Functional Gain - PTEN ENSG00000171862 CDS Human protein_coding chr10:89624226 chr10:89624228 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_107979 0 0 1 0 1 PTEN chr10:89624305 5'GT 89624305 Upstream 78bp
chr13 113772793 113772793 1 + C G SKCM 113772792 + 113772772 113772812 41 GGGTGGCGCAGGTCATCATCCCCAGCACGTACGTCCCGGGC GGGTGGCGCAGGTCATCATCCGCAGCACGTACGTCCCGGGC < 41bp 0.426966372303333 0.751932945943821 0.20244405 0.42656913 prediction 0.503865891887642 Functional Gain - F7 ENSG00000057593 CDS Human protein_coding chr13:113772792 chr13:113772793 nonsynonymous SNV 0.010 4 22 hm5C_associated_SNPs_107980 0 0 0 0 1 F7 chr13:113772727 3'AG 113772727 Downstream 67bp
chr4 129764136 129764136 1 + C T SKCM 129764135 + 129764115 129764155 41 AACTACTTGGTCCCAGAATTCCCGATCCCAGCATAGGAGAA AACTACTTGGTCCCAGAATTCTCGATCCCAGCATAGGAGAA < 41bp 0.530686231949256 0.78260768426607 0.12658334 0.3727952 prediction 0.503842904633629 Functional Gain - JADE1 ENSG00000077684 CDS Human protein_coding chr4:129764135 chr4:129764136 synonymous SNV . 0 22 hm5C_associated_SNPs_107981 0 0 1 0 2 JADE1 chr4:129764108 3'AG 129764108 Downstream 29bp
chr4 129764136 129764136 1 + C T SKCM 129764135 + 129764115 129764155 41 AACTACTTGGTCCCAGAATTCCCGATCCCAGCATAGGAGAA AACTACTTGGTCCCAGAATTCTCGATCCCAGCATAGGAGAA < 41bp 0.530686231949256 0.78260768426607 0.12658334 0.3727952 prediction 0.503842904633629 Functional Gain - JADE1 ENSG00000077684 CDS Human protein_coding chr4:129764135 chr4:129764136 synonymous SNV . 0 22 hm5C_associated_SNPs_107981 0 0 1 0 2 JADE1 chr4:129764193 5'GT 129764193 Upstream 58bp
chr1 29649912 29649912 1 + C A rs566780533 29649908 + 29649888 29649928 41 CCTGCAGTACTGGCCAGAGCCAGGCCGGCAGCAATATGGCC CCTGCAGTACTGGCCAGAGCCAGGACGGCAGCAATATGGCC < 41bp 0.351291922761128 0.751920481776793 0.51442254 0.83878326 prediction 0.503840963553587 Functional Gain - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29649908 chr1:29649912 synonymous SNV . 0 25 hm5C_associated_SNPs_107982 0 0 0 0 2 PTPRU chr1:29649883 3'AG 29649883 Downstream 30bp
chr1 29649912 29649912 1 + C A rs566780533 29649908 + 29649888 29649928 41 CCTGCAGTACTGGCCAGAGCCAGGCCGGCAGCAATATGGCC CCTGCAGTACTGGCCAGAGCCAGGACGGCAGCAATATGGCC < 41bp 0.351291922761128 0.751920481776793 0.51442254 0.83878326 prediction 0.503840963553587 Functional Gain - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29649908 chr1:29649912 synonymous SNV . 0 25 hm5C_associated_SNPs_107982 0 0 0 0 2 PTPRU chr1:29650008 5'GT 29650008 Upstream 97bp
chr12 132401566 132401566 1 + C G rs11546871 132401565 + 132401545 132401585 41 TTGGGACACAAGCCCCGGACCCGGGCAGCACGGAGAGCCTG TTGGGACACAAGCCCCGGACCGGGGCAGCACGGAGAGCCTG < 41bp 0.431002331824139 0.751913861929042 0.74248564 0.89322984 prediction 0.503827723858085 Functional Gain - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132401565 chr12:132401566 nonsynonymous SNV 0.043 0 22 hm5C_associated_SNPs_107983 0 0 1 0 2 ULK1 chr12:132401498 3'AG 132401498 Downstream 69bp
chr12 132401566 132401566 1 + C G rs11546871 132401565 + 132401545 132401585 41 TTGGGACACAAGCCCCGGACCCGGGCAGCACGGAGAGCCTG TTGGGACACAAGCCCCGGACCGGGGCAGCACGGAGAGCCTG < 41bp 0.431002331824139 0.751913861929042 0.74248564 0.89322984 prediction 0.503827723858085 Functional Gain - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132401565 chr12:132401566 nonsynonymous SNV 0.043 0 22 hm5C_associated_SNPs_107983 0 0 1 0 2 ULK1 chr12:132401607 5'GT 132401607 Upstream 42bp
chr5 145643075 145643075 1 + T G GBM 145643073 + 145643053 145643093 41 GATGATGAGCAAACCACAGACATCAGGTGCATATGTTCTTA GATGATGAGCAAACCACAGACAGCAGGTGCATATGTTCTTA < 41bp 0.433750201303336 0.751905466230622 0.22257295 0.37491876 prediction 0.503810932461243 Functional Gain - RBM27 ENSG00000091009 CDS Human protein_coding chr5:145643073 chr5:145643075 nonsynonymous SNV 0.980 0 23 hm5C_associated_SNPs_107985 0 0 1 0 1 RBM27 chr5:145643054 3'AG 145643054 Downstream 22bp
chr7 6617247 6617247 1 + C G rs11559147 6617246 + 6617226 6617266 41 CCGTCCCACCCCCACCTCGCCCGAGTCCGGGGCGGCCCCGG CCGTCCCACCCCCACCTCGCCGGAGTCCGGGGCGGCCCCGG < 41bp 0.545515065903221 0.79741872691268 0.17098242 0.9303057 prediction 0.503807322018918 Functional Gain - ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617246 chr7:6617247 . . 0 22 hm5C_associated_SNPs_107986 0 0 1 0 1 ZDHHC4 chr7:6617221 3'AG 6617221 Downstream 27bp
chr15 65945014 65945014 1 + T C COAD 65945012 + 65944992 65945032 41 ATAGGGATTTCTGAAGAGATCATGGGCCTGACAATCCTTGC ATAGGGATTTCTGAAGAGATCACGGGCCTGACAATCCTTGC < 41bp 0.4937570452801 0.75189665507703 0.21708637 0.34485066 prediction 0.503793310154059 Functional Gain - SLC24A1 ENSG00000074621 CDS Human protein_coding chr15:65945012 chr15:65945014 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_107988 0 0 0 1 1 SLC24A1 chr15:65944980 3'AG 65944980 Downstream 35bp
chr5 156746874 156746874 1 + C A UCEC 156746873 + 156746853 156746893 41 CGCGGCATTGCAGGACTTCGCCCAGGTGACGCTGCGTGAGC CGCGGCATTGCAGGACTTCGCACAGGTGACGCTGCGTGAGC < 41bp 0.496540215593287 0.751895163861254 0.13692757 0.5062205 prediction 0.503790327722508 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156746873 chr5:156746874 synonymous SNV . 0 22 hm5C_associated_SNPs_107990 0 0 1 0 1 CYFIP2 chr5:156746936 5'GT 156746936 Upstream 63bp
chr5 140080460 140080460 1 + C G rs145640336 140080459 + 140080439 140080479 41 AGATGAATATGAGAAACTCGCCGAGAAGAGGCTCACGGAAG AGATGAATATGAGAAACTCGCGGAGAAGAGGCTCACGGAAG < 41bp 0.580151252635674 0.8320257528295 0.4750633 0.90319014 prediction 0.503749000387652 Functional Gain - ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140080459 chr5:140080460 synonymous SNV . 0 22 hm5C_associated_SNPs_107992 0 0 1 0 2 ZMAT2 chr5:140080404 3'AG 140080404 Downstream 57bp
chr5 140080460 140080460 1 + C G rs145640336 140080459 + 140080439 140080479 41 AGATGAATATGAGAAACTCGCCGAGAAGAGGCTCACGGAAG AGATGAATATGAGAAACTCGCGGAGAAGAGGCTCACGGAAG < 41bp 0.580151252635674 0.8320257528295 0.4750633 0.90319014 prediction 0.503749000387652 Functional Gain - ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140080459 chr5:140080460 synonymous SNV . 0 22 hm5C_associated_SNPs_107992 0 0 1 0 2 ZMAT2 chr5:140080497 5'GT 140080497 Upstream 38bp
chr17 66042012 66042012 1 + T C UCEC 66042010 + 66041990 66042030 41 GTGTATAAGGCTTCGTTAAGCTTAATTGAGAAGTATTTCTC GTGTATAAGGCTTCGTTAAGCTCAATTGAGAAGTATTTCTC < 41bp 0.469022910011941 0.751858297621103 0.045048147 0.07068542 prediction 0.503716595242205 Functional Gain - KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66042010 chr17:66042012 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_107993 0 0 1 0 1 KPNA2 chr17:66042037 5'GT 66042037 Upstream 26bp
chr2 27745432 27745432 1 + C G LUAD 27745428 + 27745408 27745448 41 ATTCGGGCTGCTCCCATCTCCTGCCATGTCCAGGTTGCACA ATTCGGGCTGCTCCCATCTCCTGCGATGTCCAGGTTGCACA < 41bp 0.460872523925143 0.751857701802287 0.067302555 0.18721256 prediction 0.503715403604573 Functional Gain - GCKR ENSG00000084734 CDS Human protein_coding chr2:27745428 chr2:27745432 nonsynonymous SNV 0.794 4 25 hm5C_associated_SNPs_107994 0 0 1 0 1 GCKR chr2:27745461 5'GT 27745461 Upstream 30bp
chr14 100405567 100405567 1 + T C UCEC 100405565 + 100405545 100405585 41 GAAGGCTCGGACGGAACCGACATCAATGCCGTCTGTCGGGC GAAGGCTCGGACGGAACCGACACCAATGCCGTCTGTCGGGC < 41bp 0.455183085925841 0.751857423378754 0.31948593 0.30689728 prediction 0.503714846757508 Functional Gain - EML1 ENSG00000066629 CDS Human protein_coding chr14:100405565 chr14:100405567 nonsynonymous SNV 0.955 2 23 hm5C_associated_SNPs_107995 0 0 0 0 1 EML1 chr14:100405534 3'AG 100405534 Downstream 34bp
chr19 36142225 36142225 1 + C G GBM 36142221 + 36142201 36142241 41 GCCGCTTCCCCAACCAGAACCAGACTAGAAACTGCTGGCAG GCCGCTTCCCCAACCAGAACCAGAGTAGAAACTGCTGGCAG < 41bp 0.522355359330157 0.774208666051741 0.31031856 0.90038 prediction 0.503706613443169 Functional Gain - COX6B1 ENSG00000126267 CDS Human protein_coding chr19:36142221 chr19:36142225 nonsynonymous SNV 0.914 5 25 hm5C_associated_SNPs_107996 0 0 1 0 2 COX6B1 chr19:36142135 3'AG 36142135 Downstream 91bp
chr19 36142225 36142225 1 + C G GBM 36142221 + 36142201 36142241 41 GCCGCTTCCCCAACCAGAACCAGACTAGAAACTGCTGGCAG GCCGCTTCCCCAACCAGAACCAGAGTAGAAACTGCTGGCAG < 41bp 0.522355359330157 0.774208666051741 0.31031856 0.90038 prediction 0.503706613443169 Functional Gain - COX6B1 ENSG00000126267 CDS Human protein_coding chr19:36142221 chr19:36142225 nonsynonymous SNV 0.914 5 25 hm5C_associated_SNPs_107996 0 0 1 0 2 COX6B1 chr19:36142251 5'GT 36142251 Upstream 27bp
chr19 36357372 36357372 1 + C A COAD 36357371 + 36357351 36357391 41 CCTTCCCCACACCTAGCCACCCGCGTCTCCAGACTCACGTG CCTTCCCCACACCTAGCCACCAGCGTCTCCAGACTCACGTG < 41bp 0.494272025454623 0.751850102391063 0.020676196 0.04885456 prediction 0.503700204782125 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36357371 chr19:36357372 nonsynonymous SNV 0.519 0 22 hm5C_associated_SNPs_107998 0 0 0 0 1 KIRREL2 chr19:36357367 3'AG 36357367 Downstream 6bp
chr22 32215150 32215150 1 + C A LUSC 32215146 + 32215126 32215166 41 AGCACTGATTAACCCCTTCGCTCCCTCTCGGATGCCCATGA AGCACTGATTAACCCCTTCGCTCCATCTCGGATGCCCATGA < 41bp 0.333221828917262 0.751839578890676 0.043803513 0.79839915 prediction 0.503679157781351 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32215146 chr22:32215150 synonymous SNV . 0 25 hm5C_associated_SNPs_108000 0 0 0 0 1 DEPDC5 chr22:32215211 5'GT 32215211 Upstream 62bp
chr7 48092405 48092405 1 + C T COAD 48092404 + 48092384 48092424 41 AGCTGACTCAGACAAGAGGACCCCGAAGACCTCCAGGGCAT AGCTGACTCAGACAAGAGGACTCCGAAGACCTCCAGGGCAT < 41bp 0.510978628315892 0.762816188486052 0.011287391 0.029952407 prediction 0.503675120340318 Functional Gain - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48092404 chr7:48092405 synonymous SNV . 0 22 hm5C_associated_SNPs_108001 0 0 0 0 1 C7orf57 chr7:48092345 3'AG 48092345 Downstream 61bp
chr19 54656240 54656240 1 + C T SKCM 54656239 + 54656219 54656259 41 AGCTGTCAGAGGTGAACATACCGCTGTCGCTGGGTGTCTGT AGCTGTCAGAGGTGAACATACTGCTGTCGCTGGGTGTCTGT < 41bp 0.504584284516064 0.756412026321834 0.35805008 0.32210267 prediction 0.50365548361154 Functional Gain - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54656239 chr19:54656240 nonsynonymous SNV 0.969 4 22 hm5C_associated_SNPs_108004 0 0 1 0 1 CNOT3 chr19:54656165 3'AG 54656165 Downstream 76bp
chr2 74757613 74757613 1 + C G rs2231248 74757609 + 74757589 74757629 41 TGTGGTGGAGAAGACAGCACCTGCCGTGGTCTATATCGAGA TGTGGTGGAGAAGACAGCACCTGCGGTGGTCTATATCGAGA < 41bp 0.476360069961324 0.751823489779991 0.09313175 0.22066742 prediction 0.503646979559982 Functional Gain - HTRA2 ENSG00000115317 CDS Human protein_coding chr2:74757609 chr2:74757613 synonymous SNV . 0 25 hm5C_associated_SNPs_108005 1 0 0 0 1 HTRA2 chr2:74757639 5'GT 74757639 Upstream 27bp
chr10 13213187 13213187 1 + C T CESC 13213186 + 13213166 13213206 41 AACAGATGAAGAAGAAGTTCCCGCATCACAGTCAACTGAAA AACAGATGAAGAAGAAGTTCCTGCATCACAGTCAACTGAAA < 41bp 0.508429112261955 0.76023470480356 0.12785 0.2525488 prediction 0.50361118508321 Functional Gain - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13213186 chr10:13213187 synonymous SNV . 0 22 hm5C_associated_SNPs_108011 0 0 1 0 1 MCM10 chr10:13213263 5'GT 13213263 Upstream 77bp
chr12 9086993 9086993 1 + C T SKCM 9086992 + 9086972 9087012 41 ACAAATGGGTGACTCAAAACCCCCACAGGCCATCGTGAAGC ACAAATGGGTGACTCAAAACCTCCACAGGCCATCGTGAAGC < 41bp 0.568401014690099 0.820190611713612 0.019108951 0.95714897 prediction 0.503579194047026 Functional Gain - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9086992 chr12:9086993 synonymous SNV . 0 22 hm5C_associated_SNPs_108016 0 0 0 0 1 PHC1 chr12:9087074 5'GT 9087074 Upstream 82bp
chr6 27222836 27222836 1 + C T LGG 27222835 + 27222815 27222855 41 TCAGAATCAACTCTTCTTATCCGCACTGGCTCCCACTGCTT TCAGAATCAACTCTTCTTATCTGCACTGGCTCCCACTGCTT < 41bp 0.514769699813892 0.766548956018657 0.42613184 0.2925558 prediction 0.50355851240953 Functional Gain - PRSS16 ENSG00000112812 CDS Human protein_coding chr6:27222835 chr6:27222836 nonsynonymous SNV 0.063 2 22 hm5C_associated_SNPs_108019 0 0 1 0 2 PRSS16 chr6:27222765 3'AG 27222765 Downstream 72bp
chr6 27222836 27222836 1 + C T LGG 27222835 + 27222815 27222855 41 TCAGAATCAACTCTTCTTATCCGCACTGGCTCCCACTGCTT TCAGAATCAACTCTTCTTATCTGCACTGGCTCCCACTGCTT < 41bp 0.514769699813892 0.766548956018657 0.42613184 0.2925558 prediction 0.50355851240953 Functional Gain - PRSS16 ENSG00000112812 CDS Human protein_coding chr6:27222835 chr6:27222836 nonsynonymous SNV 0.063 2 22 hm5C_associated_SNPs_108019 0 0 1 0 2 PRSS16 chr6:27222910 5'GT 27222910 Upstream 75bp
chr12 53670563 53670563 1 + C A rs61760168 53670562 + 53670542 53670582 41 GAGCCCCGAGGAGACACCAGCCGGGGCCTGGGCACGAGCCA GAGCCCCGAGGAGACACCAGCAGGGGCCTGGGCACGAGCCA < 41bp 0.526658033438451 0.778399276756968 0.9245558 0.9377581 prediction 0.503482486637034 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53670562 chr12:53670563 synonymous SNV . 0 22 hm5C_associated_SNPs_108023 0 0 1 0 1 ESPL1 chr12:53670643 5'GT 53670643 Upstream 81bp
chr1 203472112 203472112 1 + T C rs79523790 203472110 + 203472090 203472130 41 TCTATCCCGGGGCCTTTGCCCCTGAGCCTGCGCTCTGTACA TCTATCCCGGGGCCTTTGCCCCCGAGCCTGCGCTCTGTACA < 41bp 0.479190280860318 0.75172388388676 0.2619394 0.28667638 prediction 0.503447767773521 Functional Gain - OPTC ENSG00000188770 CDS Human protein_coding chr1:203472110 chr1:203472112 nonsynonymous SNV 0.860 0 23 hm5C_associated_SNPs_108027 0 0 0 0 2 OPTC chr1:203472042 3'AG 203472042 Downstream 71bp
chr1 203472112 203472112 1 + T C rs79523790 203472110 + 203472090 203472130 41 TCTATCCCGGGGCCTTTGCCCCTGAGCCTGCGCTCTGTACA TCTATCCCGGGGCCTTTGCCCCCGAGCCTGCGCTCTGTACA < 41bp 0.479190280860318 0.75172388388676 0.2619394 0.28667638 prediction 0.503447767773521 Functional Gain - OPTC ENSG00000188770 CDS Human protein_coding chr1:203472110 chr1:203472112 nonsynonymous SNV 0.860 0 23 hm5C_associated_SNPs_108027 0 0 0 0 2 OPTC chr1:203472137 5'GT 203472137 Upstream 26bp
chr17 21201777 21201777 1 + C G LUAD 21201776 + 21201756 21201796 41 ATCCTGCATGTCCAAGCCACCCGCACCCAACCCCACGTGAG ATCCTGCATGTCCAAGCCACCGGCACCCAACCCCACGTGAG < 41bp 0.4341617694351 0.751715949488045 0.04475087 0.16740647 prediction 0.50343189897609 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21201776 chr17:21201777 synonymous SNV . 0 22 hm5C_associated_SNPs_108029 0 0 0 0 2 MAP2K3 chr17:21201725 3'AG 21201725 Downstream 53bp
chr17 21201777 21201777 1 + C G LUAD 21201776 + 21201756 21201796 41 ATCCTGCATGTCCAAGCCACCCGCACCCAACCCCACGTGAG ATCCTGCATGTCCAAGCCACCGGCACCCAACCCCACGTGAG < 41bp 0.4341617694351 0.751715949488045 0.04475087 0.16740647 prediction 0.50343189897609 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21201776 chr17:21201777 synonymous SNV . 0 22 hm5C_associated_SNPs_108029 0 0 0 0 2 MAP2K3 chr17:21201791 5'GT 21201791 Upstream 15bp
chr6 35196408 35196408 1 + C A HNSC 35196404 + 35196384 35196424 41 CCCACAGACGTGGATGAGTGCGAGCGAGAGGATAATGCAGG CCCACAGACGTGGATGAGTGCGAGAGAGAGGATAATGCAGG < 41bp 0.352066541432203 0.751713712282612 0.6361033 0.856074 prediction 0.503427424565224 Functional Gain - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35196404 chr6:35196408 synonymous SNV . 0 25 hm5C_associated_SNPs_108030 0 0 0 0 1 SCUBE3 chr6:35196391 3'AG 35196391 Downstream 18bp
chr1 32050549 32050549 1 + C T SKCM 32050548 + 32050528 32050568 41 ATGACGCCTGTCCTGTCGCCCCAGAACCTGCTGTCTTGTGA ATGACGCCTGTCCTGTCGCCCTAGAACCTGCTGTCTTGTGA < 41bp 0.516391869765254 0.768101634202176 0.43958142 0.27063623 prediction 0.503419528873846 Functional Gain - TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32050548 chr1:32050549 stopgain 0.927 1 22 hm5C_associated_SNPs_108031 0 0 0 0 1 TINAGL1 chr1:32050487 3'AG 32050487 Downstream 63bp
chr3 196381500 196381500 1 + C T SKCM 196381499 + 196381479 196381519 41 CGGAACAGCCACAGCAGCCTCCCAAGGAGTCTGCAAGTTGG CGGAACAGCCACAGCAGCCTCTCAAGGAGTCTGCAAGTTGG < 41bp 0.504456464583402 0.756164710249246 0.05754733 0.16319075 prediction 0.503416491331688 Functional Gain - NRROS ENSG00000174004 CDS Human protein_coding chr3:196381499 chr3:196381500 synonymous SNV . 0 22 hm5C_associated_SNPs_108033 0 0 0 0 1 NRROS chr3:196381518 5'GT 196381518 Upstream 19bp
chrY 6958154 6958154 1 + C A HNSC 6958150 + 6958130 6958170 41 AGTGGAAGTCTCGTCCACAGCTACCAAGGCACTGGCGGTAT AGTGGAAGTCTCGTCCACAGCTACAAAGGCACTGGCGGTAT < 41bp 0.327253407759198 0.751707973141048 0.22350618 0.6474728 prediction 0.503415946282095 Functional Gain - TBL1Y ENSG00000092377 CDS Human protein_coding chrY:6958150 chrY:6958154 nonsynonymous SNV 0.434 0 25 hm5C_associated_SNPs_108034 0 0 0 0 1 TBL1Y chrY:6958231 5'GT 6958231 Upstream 78bp
chr2 47278945 47278945 1 + C A UCEC 47278941 + 47278921 47278961 41 TGGAGGAGGCCATGTCAGAGCTGACTATGCCCTCTTCGGTC TGGAGGAGGCCATGTCAGAGCTGAATATGCCCTCTTCGGTC < 41bp 0.340667303547574 0.751706582837047 0.1883282 0.35740492 prediction 0.503413165674093 Functional Gain - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47278941 chr2:47278945 nonsynonymous SNV 0.087 3 25 hm5C_associated_SNPs_108035 0 0 0 0 2 TTC7A chr2:47278885 3'AG 47278885 Downstream 61bp
chr2 47278945 47278945 1 + C A UCEC 47278941 + 47278921 47278961 41 TGGAGGAGGCCATGTCAGAGCTGACTATGCCCTCTTCGGTC TGGAGGAGGCCATGTCAGAGCTGAATATGCCCTCTTCGGTC < 41bp 0.340667303547574 0.751706582837047 0.1883282 0.35740492 prediction 0.503413165674093 Functional Gain - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47278941 chr2:47278945 nonsynonymous SNV 0.087 3 25 hm5C_associated_SNPs_108035 0 0 0 0 2 TTC7A chr2:47279019 5'GT 47279019 Upstream 75bp
chr11 62550237 62550237 1 + T G rs139505440 62550235 + 62550215 62550255 41 TGCAGAAGATCCTGGCAGATCCTGTGCGGCCGCTCTGCTGC TGCAGAAGATCCTGGCAGATCCGGTGCGGCCGCTCTGCTGC < 41bp 0.396010503729348 0.751704009659723 0.057902485 0.2954212 prediction 0.503408019319447 Functional Gain - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62550235 chr11:62550237 synonymous SNV . 0 23 hm5C_associated_SNPs_108038 0 0 1 0 2 TAF6L chr11:62550165 3'AG 62550165 Downstream 73bp
chr11 62550237 62550237 1 + T G rs139505440 62550235 + 62550215 62550255 41 TGCAGAAGATCCTGGCAGATCCTGTGCGGCCGCTCTGCTGC TGCAGAAGATCCTGGCAGATCCGGTGCGGCCGCTCTGCTGC < 41bp 0.396010503729348 0.751704009659723 0.057902485 0.2954212 prediction 0.503408019319447 Functional Gain - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62550235 chr11:62550237 synonymous SNV . 0 23 hm5C_associated_SNPs_108038 0 0 1 0 2 TAF6L chr11:62550297 5'GT 62550297 Upstream 61bp
chr10 51748683 51748683 1 + C A KIRC 51748682 + 51748662 51748702 41 CACATGCACCACGTTCGTGACCGGGAGATGCCTGAAGGTGA CACATGCACCACGTTCGTGACAGGGAGATGCCTGAAGGTGA < 41bp 0.527349828242325 0.77900200796575 0.7091003 0.68057674 prediction 0.50330435944685 Functional Gain - AGAP6 ENSG00000204149 CDS Human protein_coding chr10:51748682 chr10:51748683 synonymous SNV . 0 22 hm5C_associated_SNPs_108044 0 0 0 0 1 AGAP6 chr10:51748698 5'GT 51748698 Upstream 16bp
chr14 74004577 74004577 1 + C A LUSC 74004573 + 74004553 74004593 41 GGGTGCGAGGCACGCTCTTCCTGCCGCCAGGTGACTCACCT GGGTGCGAGGCACGCTCTTCCTGCAGCCAGGTGACTCACCT < 41bp 0.667210735874358 0.918862023816888 0.34562492 0.5904808 prediction 0.503302575885061 Functional Gain - ACOT1 ENSG00000184227 CDS Human protein_coding chr14:74004573 chr14:74004577 nonsynonymous SNV 0.414 4 25 hm5C_associated_SNPs_108046 0 0 0 0 1 ACOT1 chr14:74004582 5'GT 74004582 Upstream 6bp
chr3 111795792 111795792 1 + C A rs61729755 111795791 + 111795771 111795811 41 GGGGAATGCCAAGTTTGTCTCCCCGGTGAGAAGAATTGTGG GGGGAATGCCAAGTTTGTCTCACCGGTGAGAAGAATTGTGG < 41bp 0.506640539842069 0.758290919265423 0.6337786 0.8599547 prediction 0.503300758846709 Functional Gain - TMPRSS7 ENSG00000176040 CDS Human protein_coding chr3:111795791 chr3:111795792 synonymous SNV . 0 22 hm5C_associated_SNPs_108047 0 0 0 0 1 TMPRSS7 chr3:111795723 3'AG 111795723 Downstream 70bp
chr10 45878095 45878095 1 + C A LUSC 45878094 + 45878074 45878114 41 CCCCTGCTACCGCTGGATCACCGGCGATGTCGAGGTTGTCC CCCCTGCTACCGCTGGATCACAGGCGATGTCGAGGTTGTCC < 41bp 0.540277007919013 0.79192677253522 0.52120095 0.78190887 prediction 0.503299529232414 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45878094 chr10:45878095 synonymous SNV . 0 22 hm5C_associated_SNPs_108048 0 0 1 0 1 ALOX5 chr10:45878129 5'GT 45878129 Upstream 35bp
chr20 35173375 35173375 1 + C T OV 35173374 + 35173354 35173394 41 TTCGCAATGTTTGACCAGTCCCAGATCCAGGAGTTTAAGGA TTCGCAATGTTTGACCAGTCCTAGATCCAGGAGTTTAAGGA < 41bp 0.50017332322642 0.751789909680599 0.18599847 0.1509465 prediction 0.503233172908358 Functional Gain - MYL9 ENSG00000101335 CDS Human protein_coding chr20:35173374 chr20:35173375 stopgain 1.000 1 22 hm5C_associated_SNPs_108053 0 0 0 0 1 MYL9 chr20:35173471 5'GT 35173471 Upstream 97bp
chr15 65152171 65152171 1 + C A SKCM 65152170 + 65152150 65152190 41 GCCCTCAATGAAGGGATTAACCGAGGCAAAAACAAGGCTTT GCCCTCAATGAAGGGATTAACAGAGGCAAAAACAAGGCTTT < 41bp 0.479114895442096 0.751603753887426 0.9085825 0.91581774 prediction 0.503207507774851 Functional Gain - PLEKHO2 ENSG00000241839;ENSG00000249240 CDS Human other chr15:65152170 chr15:65152171 synonymous SNV . 0 22 hm5C_associated_SNPs_108055 0 0 0 0 2 PLEKHO2 chr15:65152093 3'AG 65152093 Downstream 79bp
chr15 65152171 65152171 1 + C A SKCM 65152170 + 65152150 65152190 41 GCCCTCAATGAAGGGATTAACCGAGGCAAAAACAAGGCTTT GCCCTCAATGAAGGGATTAACAGAGGCAAAAACAAGGCTTT < 41bp 0.479114895442096 0.751603753887426 0.9085825 0.91581774 prediction 0.503207507774851 Functional Gain - PLEKHO2 ENSG00000241839;ENSG00000249240 CDS Human other chr15:65152170 chr15:65152171 synonymous SNV . 0 22 hm5C_associated_SNPs_108055 0 0 0 0 2 PLEKHO2 chr15:65152197 5'GT 65152197 Upstream 27bp
chr2 27666273 27666273 1 + C A OV 27666269 + 27666249 27666289 41 CCTTCTTGCTTTTCAGGATACAGCCTTGGCTCTCTGGATCC CCTTCTTGCTTTTCAGGATACAGCATTGGCTCTCTGGATCC < 41bp 0.350088935763155 0.75160072795834 0.008412689 0.010998219 prediction 0.50320145591668 Functional Gain - KRTCAP3 ENSG00000157992 CDS Human protein_coding chr2:27666269 chr2:27666273 synonymous SNV . 0 25 hm5C_associated_SNPs_108056 0 0 1 0 1 KRTCAP3 chr2:27666265 3'AG 27666265 Downstream 9bp
chr12 100707294 100707294 1 + C T SKCM 100707293 + 100707273 100707313 41 ATGTAACTCCGACTGTAAGACCAGATGCAGATCAAATGACA ATGTAACTCCGACTGTAAGACTAGATGCAGATCAAATGACA < 41bp 0.504552649343154 0.756147364867496 0.3485812 0.07430178 prediction 0.503189431048684 Functional Gain - SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100707293 chr12:100707294 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_108058 0 0 1 0 2 SCYL2 chr12:100707200 3'AG 100707200 Downstream 95bp
chr12 100707294 100707294 1 + C T SKCM 100707293 + 100707273 100707313 41 ATGTAACTCCGACTGTAAGACCAGATGCAGATCAAATGACA ATGTAACTCCGACTGTAAGACTAGATGCAGATCAAATGACA < 41bp 0.504552649343154 0.756147364867496 0.3485812 0.07430178 prediction 0.503189431048684 Functional Gain - SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100707293 chr12:100707294 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_108058 0 0 1 0 2 SCYL2 chr12:100707316 5'GT 100707316 Upstream 23bp
chr1 6688666 6688666 1 + C T HNSC 6688665 + 6688645 6688685 41 TCTGCTCCGAGCACTTCCGGCCAGAGTGCTTCAGCGCCTTT TCTGCTCCGAGCACTTCCGGCTAGAGTGCTTCAGCGCCTTT < 41bp 0.51017714580954 0.761766322000843 0.18593684 0.20809898 prediction 0.503178352382606 Functional Gain - THAP3 ENSG00000041988 CDS Human protein_coding chr1:6688665 chr1:6688666 nonsynonymous SNV 0.400 5 22 hm5C_associated_SNPs_108060 0 0 1 0 1 THAP3 chr1:6688751 5'GT 6688751 Upstream 86bp
chr16 70219854 70219854 1 + C T SKCM 70219853 + 70219833 70219873 41 GAACAACCAGCGCTGCAAAACCCGAAACCGTTACATCTGCC GAACAACCAGCGCTGCAAAACTCGAAACCGTTACATCTGCC < 41bp 0.520334958022278 0.771914312089178 0.15913585 0.85626495 prediction 0.5031587081338 Functional Gain - CLEC18C ENSG00000157335 CDS Human protein_coding chr16:70219853 chr16:70219854 synonymous SNV . 0 22 hm5C_associated_SNPs_108061 0 0 0 0 2 CLEC18C chr16:70219788 3'AG 70219788 Downstream 67bp
chr16 70219854 70219854 1 + C T SKCM 70219853 + 70219833 70219873 41 GAACAACCAGCGCTGCAAAACCCGAAACCGTTACATCTGCC GAACAACCAGCGCTGCAAAACTCGAAACCGTTACATCTGCC < 41bp 0.520334958022278 0.771914312089178 0.15913585 0.85626495 prediction 0.5031587081338 Functional Gain - CLEC18C ENSG00000157335 CDS Human protein_coding chr16:70219853 chr16:70219854 synonymous SNV . 0 22 hm5C_associated_SNPs_108061 0 0 0 0 2 CLEC18C chr16:70219879 5'GT 70219879 Upstream 26bp
chr14 75894945 75894945 1 + C G rs113661747 75894941 + 75894921 75894961 41 CCGGGGGCGCCGCCTCCCCCCGCACCTTCTGCACGGTGGGT CCGGGGGCGCCGCCTCCCCCCGCAGCTTCTGCACGGTGGGT < 41bp 0.490506174951195 0.751569833743069 0.1970107 0.33952552 prediction 0.503139667486138 Functional Gain - JDP2 ENSG00000140044 UTR5 Human protein_coding chr14:75894941 chr14:75894945 . . 0 25 hm5C_associated_SNPs_108064 0 0 1 0 1 JDP2 chr14:75894955 5'GT 75894955 Upstream 11bp
chr15 22940792 22940792 1 + C T OV 22940791 + 22940771 22940811 41 TGCGAGCAGATGATCCAGATCCGCGAGGACCACATGCGCTT TGCGAGCAGATGATCCAGATCTGCGAGGACCACATGCGCTT < 41bp 0.502287604260402 0.753849749668484 0.85030305 0.79915583 prediction 0.503124290816165 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:22940791 chr15:22940792 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_108065 0 0 1 0 2 CYFIP1 chr15:22940728 3'AG 22940728 Downstream 65bp
chr15 22940792 22940792 1 + C T OV 22940791 + 22940771 22940811 41 TGCGAGCAGATGATCCAGATCCGCGAGGACCACATGCGCTT TGCGAGCAGATGATCCAGATCTGCGAGGACCACATGCGCTT < 41bp 0.502287604260402 0.753849749668484 0.85030305 0.79915583 prediction 0.503124290816165 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:22940791 chr15:22940792 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_108065 0 0 1 0 2 CYFIP1 chr15:22940845 5'GT 22940845 Upstream 54bp
chr5 178373424 178373424 1 + C A COAD 178373423 + 178373403 178373443 41 AAGAGTGGGGGCAGCTGAGCCCCGCCCAGAGGGCCCTGTAC AAGAGTGGGGGCAGCTGAGCCACGCCCAGAGGGCCCTGTAC < 41bp 0.502964375910766 0.754511936576416 0.03787154 0.061041713 prediction 0.5030951213313 Functional Gain - ZNF454 ENSG00000178187 CDS Human protein_coding chr5:178373423 chr5:178373424 nonsynonymous SNV 0.023 2 22 hm5C_associated_SNPs_108066 0 0 0 0 2 ZNF454 chr5:178373360 3'AG 178373360 Downstream 65bp
chr5 178373424 178373424 1 + C A COAD 178373423 + 178373403 178373443 41 AAGAGTGGGGGCAGCTGAGCCCCGCCCAGAGGGCCCTGTAC AAGAGTGGGGGCAGCTGAGCCACGCCCAGAGGGCCCTGTAC < 41bp 0.502964375910766 0.754511936576416 0.03787154 0.061041713 prediction 0.5030951213313 Functional Gain - ZNF454 ENSG00000178187 CDS Human protein_coding chr5:178373423 chr5:178373424 nonsynonymous SNV 0.023 2 22 hm5C_associated_SNPs_108066 0 0 0 0 2 ZNF454 chr5:178373486 5'GT 178373486 Upstream 63bp
chr19 47880446 47880446 1 + C T rs187504350 47880445 + 47880425 47880465 41 CCGTACCTGGTGAACTGCGTCCGCATCCCTGCCCTCCAGGT CCGTACCTGGTGAACTGCGTCTGCATCCCTGCCCTCCAGGT < 41bp 0.492618383463191 0.751545033155445 0.21820709 0.2607977 prediction 0.503090066310889 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47880445 chr19:47880446 nonsynonymous SNV 0.989 3 22 hm5C_associated_SNPs_108067 0 0 1 0 2 DHX34 chr19:47880357 3'AG 47880357 Downstream 90bp
chr19 47880446 47880446 1 + C T rs187504350 47880445 + 47880425 47880465 41 CCGTACCTGGTGAACTGCGTCCGCATCCCTGCCCTCCAGGT CCGTACCTGGTGAACTGCGTCTGCATCCCTGCCCTCCAGGT < 41bp 0.492618383463191 0.751545033155445 0.21820709 0.2607977 prediction 0.503090066310889 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47880445 chr19:47880446 nonsynonymous SNV 0.989 3 22 hm5C_associated_SNPs_108067 0 0 1 0 2 DHX34 chr19:47880463 5'GT 47880463 Upstream 18bp
chr16 20838466 20838466 1 + C A LGG 20838465 + 20838445 20838485 41 AGTTAAAAGCACTGCTTCCTCCTGATGCTGTGTTAGTGGGC AGTTAAAAGCACTGCTTCCTCATGATGCTGTGTTAGTGGGC < 41bp 0.518512077724496 0.770049645320515 0.11234513 0.1818594 prediction 0.503075135192038 Functional Gain - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20838465 chr16:20838466 nonsynonymous SNV 0.999 0 22 hm5C_associated_SNPs_108069 0 0 1 0 2 REXO5 chr16:20838380 3'AG 20838380 Downstream 87bp
chr16 20838466 20838466 1 + C A LGG 20838465 + 20838445 20838485 41 AGTTAAAAGCACTGCTTCCTCCTGATGCTGTGTTAGTGGGC AGTTAAAAGCACTGCTTCCTCATGATGCTGTGTTAGTGGGC < 41bp 0.518512077724496 0.770049645320515 0.11234513 0.1818594 prediction 0.503075135192038 Functional Gain - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20838465 chr16:20838466 nonsynonymous SNV 0.999 0 22 hm5C_associated_SNPs_108069 0 0 1 0 2 REXO5 chr16:20838518 5'GT 20838518 Upstream 53bp
chr3 183994288 183994288 1 + C G LUAD 183994284 + 183994264 183994304 41 GGCAGATGGTGGAGTACAAACGGGCCACGCTTCGGGATGAA GGCAGATGGTGGAGTACAAACGGGGCACGCTTCGGGATGAA < 41bp 0.583315041848483 0.834835179348532 0.8930809 0.9165884 prediction 0.503040275000097 Functional Gain - ECE2 ENSG00000145194 CDS Human protein_coding chr3:183994284 chr3:183994288 nonsynonymous SNV 0.993 1 25 hm5C_associated_SNPs_108072 0 0 0 0 1 ECE2 chr3:183994355 5'GT 183994355 Upstream 68bp
chr4 7055826 7055826 1 + C T SKCM 7055825 + 7055805 7055845 41 ACGTTGGTGCTTCCCGGACTCCCCAAGAGGTGATGGAGCAT ACGTTGGTGCTTCCCGGACTCTCCAAGAGGTGATGGAGCAT < 41bp 0.494081982203575 0.751519979352226 0.15500611 0.9666296 prediction 0.503039958704451 Functional Gain - TADA2B ENSG00000173011 CDS Human protein_coding chr4:7055825 chr4:7055826 nonsynonymous SNV 0.735 2 22 hm5C_associated_SNPs_108073 0 0 1 0 1 TADA2B chr4:7055789 3'AG 7055789 Downstream 38bp
chr15 69747556 69747556 1 + C G rs78395337 69747555 + 69747535 69747575 41 CCTCATCTGCAATGTAGGGGCCGGTGGACCTGCTCCAGCAG CCTCATCTGCAATGTAGGGGCGGGTGGACCTGCTCCAGCAG < 41bp 0.614029678367405 0.865545888312261 0.8597373 0.8893248 prediction 0.503032419889712 Functional Gain - RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747555 chr15:69747556 synonymous SNV . 0 22 hm5C_associated_SNPs_108074 0 0 1 0 2 RPLP1 chr15:69747509 3'AG 69747509 Downstream 48bp
chr15 69747556 69747556 1 + C G rs78395337 69747555 + 69747535 69747575 41 CCTCATCTGCAATGTAGGGGCCGGTGGACCTGCTCCAGCAG CCTCATCTGCAATGTAGGGGCGGGTGGACCTGCTCCAGCAG < 41bp 0.614029678367405 0.865545888312261 0.8597373 0.8893248 prediction 0.503032419889712 Functional Gain - RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747555 chr15:69747556 synonymous SNV . 0 22 hm5C_associated_SNPs_108074 0 0 1 0 2 RPLP1 chr15:69747626 5'GT 69747626 Upstream 71bp
chr2 85510662 85510662 1 + C T rs111816159 85510661 + 85510641 85510681 41 CCTCGATGTCCCCTCCAGCGCCACAGTCAAGGACACGAGGT CCTCGATGTCCCCTCCAGCGCTACAGTCAAGGACACGAGGT < 41bp 0.495675721739429 0.751482091090817 0.09398782 0.10977891 prediction 0.502964182181634 Functional Gain - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85510661 chr2:85510662 synonymous SNV . 0 22 hm5C_associated_SNPs_108078 0 0 0 0 2 TCF7L1 chr2:85510618 3'AG 85510618 Downstream 45bp
chr2 85510662 85510662 1 + C T rs111816159 85510661 + 85510641 85510681 41 CCTCGATGTCCCCTCCAGCGCCACAGTCAAGGACACGAGGT CCTCGATGTCCCCTCCAGCGCTACAGTCAAGGACACGAGGT < 41bp 0.495675721739429 0.751482091090817 0.09398782 0.10977891 prediction 0.502964182181634 Functional Gain - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85510661 chr2:85510662 synonymous SNV . 0 22 hm5C_associated_SNPs_108078 0 0 0 0 2 TCF7L1 chr2:85510701 5'GT 85510701 Upstream 40bp
chr6 43106668 43106668 1 + C A UCEC 43106664 + 43106644 43106684 41 GCTACTTGGATTGCCTGACCCAGGCCACACCAAAACCTACA GCTACTTGGATTGCCTGACCCAGGACACACCAAAACCTACA < 41bp 0.342864686584861 0.751456379721667 0.51147425 0.4073432 prediction 0.502912759443334 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43106664 chr6:43106668 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_108082 0 0 1 0 2 PTK7 chr6:43106587 3'AG 43106587 Downstream 82bp
chr6 43106668 43106668 1 + C A UCEC 43106664 + 43106644 43106684 41 GCTACTTGGATTGCCTGACCCAGGCCACACCAAAACCTACA GCTACTTGGATTGCCTGACCCAGGACACACCAAAACCTACA < 41bp 0.342864686584861 0.751456379721667 0.51147425 0.4073432 prediction 0.502912759443334 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43106664 chr6:43106668 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_108082 0 0 1 0 2 PTK7 chr6:43106720 5'GT 43106720 Upstream 53bp
chr19 13868275 13868275 1 + C T SKCM 13868274 + 13868254 13868294 41 TGGTGCGATGGCTGCAAGAACCACATCGGCATGGGTGAGCC TGGTGCGATGGCTGCAAGAACTACATCGGCATGGGTGAGCC < 41bp 0.525786921190616 0.777242780515685 0.07022998 0.8256378 prediction 0.502911718650138 Functional Gain - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13868274 chr19:13868275 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_108083 0 0 1 0 2 CCDC130 chr19:13868232 3'AG 13868232 Downstream 44bp
chr19 13868275 13868275 1 + C T SKCM 13868274 + 13868254 13868294 41 TGGTGCGATGGCTGCAAGAACCACATCGGCATGGGTGAGCC TGGTGCGATGGCTGCAAGAACTACATCGGCATGGGTGAGCC < 41bp 0.525786921190616 0.777242780515685 0.07022998 0.8256378 prediction 0.502911718650138 Functional Gain - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13868274 chr19:13868275 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_108083 0 0 1 0 2 CCDC130 chr19:13868287 5'GT 13868287 Upstream 13bp
chr10 88418410 88418410 1 + C A LUAD 88418409 + 88418389 88418429 41 GCTGGGCGTTTGGCTCTATGCCCTGGCCTGGAGTCTGCCAC GCTGGGCGTTTGGCTCTATGCACTGGCCTGGAGTCTGCCAC < 41bp 0.522382963083981 0.773825784190444 0.1813893 0.1939202 prediction 0.502885642212927 Functional Gain - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88418409 chr10:88418410 synonymous SNV . 0 22 hm5C_associated_SNPs_108085 0 0 0 0 1 OPN4 chr10:88418444 5'GT 88418444 Upstream 35bp
chr9 136505055 136505055 1 + C A UCEC 136505054 + 136505034 136505074 41 GTGCAGAGGACCCCAGAAGGCCTGACCCTGCTTTTCAAGAG GTGCAGAGGACCCCAGAAGGCATGACCCTGCTTTTCAAGAG < 41bp 0.521365467813754 0.772806385406647 0.05301991 0.14246255 prediction 0.502881835185786 Functional Gain - DBH ENSG00000123454 CDS Human protein_coding chr9:136505054 chr9:136505055 nonsynonymous SNV 0.209 2 22 hm5C_associated_SNPs_108086 0 0 0 0 2 DBH chr9:136504968 3'AG 136504968 Downstream 88bp
chr9 136505055 136505055 1 + C A UCEC 136505054 + 136505034 136505074 41 GTGCAGAGGACCCCAGAAGGCCTGACCCTGCTTTTCAAGAG GTGCAGAGGACCCCAGAAGGCATGACCCTGCTTTTCAAGAG < 41bp 0.521365467813754 0.772806385406647 0.05301991 0.14246255 prediction 0.502881835185786 Functional Gain - DBH ENSG00000123454 CDS Human protein_coding chr9:136505054 chr9:136505055 nonsynonymous SNV 0.209 2 22 hm5C_associated_SNPs_108086 0 0 0 0 2 DBH chr9:136505114 5'GT 136505114 Upstream 60bp
chr11 105774688 105774688 1 + T C HNSC 105774686 + 105774666 105774706 41 CCATGGGGCCAGGGAATTGACATGGAGAGGACACTCAAACA CCATGGGGCCAGGGAATTGACACGGAGAGGACACTCAAACA < 41bp 0.514454448762354 0.765887090017962 0.58218867 0.562935 prediction 0.502865282511216 Functional Gain - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105774686 chr11:105774688 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_108088 0 0 0 0 1 GRIA4 chr11:105774707 5'GT 105774707 Upstream 20bp
chr19 34832424 34832424 1 + T C COAD 34832422 + 34832402 34832442 41 TTCTGGAAATGGAAACAAATCTTCAGGTGGCCTGCAGAAGA TTCTGGAAATGGAAACAAATCTCCAGGTGGCCTGCAGAAGA < 41bp 0.457442316086876 0.751400989209297 0.8012124 0.9621738 prediction 0.502801978418595 Functional Gain - KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34832422 chr19:34832424 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_108092 0 0 1 0 1 KIAA0355 chr19:34832327 3'AG 34832327 Downstream 98bp
chr20 31606541 31606541 1 + C A ESCA 31606540 + 31606520 31606560 41 TACCGAGGGCTCCATGGCCACCGTGGGCCTCTCCCAGCAGC TACCGAGGGCTCCATGGCCACAGTGGGCCTCTCCCAGCAGC < 41bp 0.484698973991558 0.751396631137277 0.40783286 0.6473112 prediction 0.502793262274553 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31606540 chr20:31606541 synonymous SNV . 0 22 hm5C_associated_SNPs_108093 0 0 1 0 2 BPIFB2 chr20:31606443 3'AG 31606443 Downstream 99bp
chr20 31606541 31606541 1 + C A ESCA 31606540 + 31606520 31606560 41 TACCGAGGGCTCCATGGCCACCGTGGGCCTCTCCCAGCAGC TACCGAGGGCTCCATGGCCACAGTGGGCCTCTCCCAGCAGC < 41bp 0.484698973991558 0.751396631137277 0.40783286 0.6473112 prediction 0.502793262274553 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31606540 chr20:31606541 synonymous SNV . 0 22 hm5C_associated_SNPs_108093 0 0 1 0 2 BPIFB2 chr20:31606628 5'GT 31606628 Upstream 88bp
chr10 85973846 85973846 1 + C T SKCM 85973845 + 85973825 85973865 41 CTTTCTCTTTCAGACCCTCTCCCGGAGCCCCATGGCTGCCT CTTTCTCTTTCAGACCCTCTCTCGGAGCCCCATGGCTGCCT < 41bp 0.498615165875416 0.751392240640659 0.87025094 0.51723135 prediction 0.502784481281318 Functional Gain - CDHR1 ENSG00000148600 CDS Human protein_coding chr10:85973845 chr10:85973846 synonymous SNV . 0 22 hm5C_associated_SNPs_108095 0 0 0 0 1 CDHR1 chr10:85973838 3'AG 85973838 Downstream 9bp
chr22 35796450 35796450 1 + C G BLCA 35796446 + 35796426 35796466 41 GCAGTCATGTCGGGATTCGACGATCCTGGCATTTTCTACAG GCAGTCATGTCGGGATTCGACGATGCTGGCATTTTCTACAG < 41bp 0.464185266681557 0.751373355277558 0.4273547 0.65721506 prediction 0.502746710555115 Functional Gain - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35796446 chr22:35796450 nonsynonymous SNV 0.979 1 25 hm5C_associated_SNPs_108099 0 0 1 0 1 MCM5 chr22:35796424 3'AG 35796424 Downstream 27bp
chr19 17597444 17597444 1 + C A SKCM 17597440 + 17597420 17597460 41 GCGTGCCGGCCACACCATCCCGCGCATCTTTCAGGCGGTAG GCGTGCCGGCCACACCATCCCGCGAATCTTTCAGGCGGTAG < 41bp 0.660698832941444 0.912064477353382 0.3327495 0.5650019 prediction 0.502731288823876 Functional Gain - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17597440 chr19:17597444 synonymous SNV . 0 25 hm5C_associated_SNPs_108100 0 0 0 0 1 SLC27A1 chr19:17597372 3'AG 17597372 Downstream 73bp
chr11 22296233 22296233 1 + T G rs146136277 22296231 + 22296211 22296251 41 AATAATAGCCTGTCAGTATTCCTGATAGCTGATTTTCCAAA AATAATAGCCTGTCAGTATTCCGGATAGCTGATTTTCCAAA < 41bp 0.416591534408897 0.751336263536889 0.24097213 0.79641163 prediction 0.502672527073778 Functional Gain - ANO5 ENSG00000171714 CDS Human protein_coding chr11:22296231 chr11:22296233 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_108104 2 0 0 0 1 ANO5 chr11:22296293 5'GT 22296293 Upstream 61bp
chr2 43934621 43934621 1 + C G BRCA 43934620 + 43934600 43934640 41 GACAGCTCCAGATCCAGCTCCCGGACGTCAGAGTCAGACTC GACAGCTCCAGATCCAGCTCCGGGACGTCAGAGTCAGACTC < 41bp 0.433173611463912 0.751330876637254 0.61383814 0.7222557 prediction 0.502661753274507 Functional Gain - PLEKHH2 ENSG00000152527 CDS Human protein_coding chr2:43934620 chr2:43934621 nonsynonymous SNV 0.784 0 22 hm5C_associated_SNPs_108106 0 0 0 0 2 PLEKHH2 chr2:43934540 3'AG 43934540 Downstream 82bp
chr2 43934621 43934621 1 + C G BRCA 43934620 + 43934600 43934640 41 GACAGCTCCAGATCCAGCTCCCGGACGTCAGAGTCAGACTC GACAGCTCCAGATCCAGCTCCGGGACGTCAGAGTCAGACTC < 41bp 0.433173611463912 0.751330876637254 0.61383814 0.7222557 prediction 0.502661753274507 Functional Gain - PLEKHH2 ENSG00000152527 CDS Human protein_coding chr2:43934620 chr2:43934621 nonsynonymous SNV 0.784 0 22 hm5C_associated_SNPs_108106 0 0 0 0 2 PLEKHH2 chr2:43934684 5'GT 43934684 Upstream 64bp
chr11 134153721 134153721 1 + C G rs147078049 134153720 + 134153700 134153740 41 GTATTTTGACCACCTGATTCCCAGAGTGATTCCTCTCCAGG GTATTTTGACCACCTGATTCCGAGAGTGATTCCTCTCCAGG < 41bp 0.438105373681589 0.751326199278914 0.4279153 0.8462733 prediction 0.502652398557827 Functional Gain - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134153720 chr11:134153721 synonymous SNV . 0 22 hm5C_associated_SNPs_108107 0 0 0 0 2 GLB1L3 chr11:134153631 3'AG 134153631 Downstream 91bp
chr11 134153721 134153721 1 + C G rs147078049 134153720 + 134153700 134153740 41 GTATTTTGACCACCTGATTCCCAGAGTGATTCCTCTCCAGG GTATTTTGACCACCTGATTCCGAGAGTGATTCCTCTCCAGG < 41bp 0.438105373681589 0.751326199278914 0.4279153 0.8462733 prediction 0.502652398557827 Functional Gain - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134153720 chr11:134153721 synonymous SNV . 0 22 hm5C_associated_SNPs_108107 0 0 0 0 2 GLB1L3 chr11:134153739 5'GT 134153739 Upstream 19bp
chr7 117876881 117876881 1 + T C LUSC 117876879 + 117876859 117876899 41 TGCTGTCAGTGGTGAACCACCATGTTTAGTAAAGCTTCTTC TGCTGTCAGTGGTGAACCACCACGTTTAGTAAAGCTTCTTC < 41bp 0.521848515316507 0.773154914748773 0.0507119 0.055894524 prediction 0.502612798864533 Functional Gain - ANKRD7 ENSG00000106013 CDS Human protein_coding chr7:117876879 chr7:117876881 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_108108 0 0 0 0 2 ANKRD7 chr7:117876844 3'AG 117876844 Downstream 38bp
chr7 117876881 117876881 1 + T C LUSC 117876879 + 117876859 117876899 41 TGCTGTCAGTGGTGAACCACCATGTTTAGTAAAGCTTCTTC TGCTGTCAGTGGTGAACCACCACGTTTAGTAAAGCTTCTTC < 41bp 0.521848515316507 0.773154914748773 0.0507119 0.055894524 prediction 0.502612798864533 Functional Gain - ANKRD7 ENSG00000106013 CDS Human protein_coding chr7:117876879 chr7:117876881 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_108108 0 0 0 0 2 ANKRD7 chr7:117876980 5'GT 117876980 Upstream 100bp
chr19 42795782 42795782 1 + T A ACC 42795778 + 42795758 42795798 41 AGCTGCTGCCTGGGAAGGTCCTAGTGCCTCTGGCCGCCCCT AGCTGCTGCCTGGGAAGGTCCTAGAGCCTCTGGCCGCCCCT < 41bp 0.608623363378834 0.859892834670125 0.47993132 0.73902845 prediction 0.502538942582582 Functional Gain - CIC ENSG00000079432 CDS Human protein_coding chr19:42795778 chr19:42795782 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_108113 0 0 1 0 1 CIC chr19:42795710 3'AG 42795710 Downstream 73bp
chr7 127238546 127238546 1 + C T COAD 127238545 + 127238525 127238565 41 CTGGAGTCTGACACGTTCTTCCGAATGCACTGGAACTGTGG CTGGAGTCTGACACGTTCTTCTGAATGCACTGGAACTGTGG < 41bp 0.502148480285109 0.753417616356558 0.4582926 0.33516288 prediction 0.502538272142898 Functional Gain - FSCN3 ENSG00000106328 CDS Human protein_coding chr7:127238545 chr7:127238546 stopgain 0.717 0 22 hm5C_associated_SNPs_108114 0 0 0 0 1 FSCN3 chr7:127238489 3'AG 127238489 Downstream 58bp
chr2 69046383 69046383 1 + C A COAD 69046382 + 69046362 69046402 41 CCCAAGAAAGCTCCAGTGGCCCGAAGCTCTGTAGGCTGGGA CCCAAGAAAGCTCCAGTGGCCAGAAGCTCTGTAGGCTGGGA < 41bp 0.490248732797227 0.751267838470024 0.14171672 0.37799194 prediction 0.502535676940049 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69046382 chr2:69046383 synonymous SNV . 0 22 hm5C_associated_SNPs_108116 0 0 0 0 1 ARHGAP25 chr2:69046451 5'GT 69046451 Upstream 69bp
chr3 32931919 32931919 1 + T C ESCA 32931917 + 32931897 32931937 41 GTGGAGAAGCTGCGGCAAAACCTCAACAAGCTTGAGAGCAC GTGGAGAAGCTGCGGCAAAACCCCAACAAGCTTGAGAGCAC < 41bp 0.469756965560718 0.751265641494924 0.30447254 0.34823403 prediction 0.502531282989849 Functional Gain - TRIM71 ENSG00000206557 CDS Human protein_coding chr3:32931917 chr3:32931919 nonsynonymous SNV 0.871 5 23 hm5C_associated_SNPs_108117 0 0 0 0 1 TRIM71 chr3:32931852 3'AG 32931852 Downstream 68bp
chr10 118354355 118354355 1 + C A LUAD 118354354 + 118354334 118354374 41 AGTGGTGGGCGCCCAGGTGGCCCAGATGCTCGACATCCTCT AGTGGTGGGCGCCCAGGTGGCACAGATGCTCGACATCCTCT < 41bp 0.525217928331643 0.776481633986449 0.58011484 0.6510457 prediction 0.502527411309613 Functional Gain - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118354354 chr10:118354355 synonymous SNV . 0 22 hm5C_associated_SNPs_108118 0 0 0 0 1 PNLIPRP1 chr10:118354376 5'GT 118354376 Upstream 22bp
chr12 4853790 4853790 1 + C A rs138133023 4853789 + 4853769 4853809 41 AGGAAAGGTCTTGCTCAAGCCCGCAACACTGGCTGGGAAGC AGGAAAGGTCTTGCTCAAGCCAGCAACACTGGCTGGGAAGC < 41bp 0.527701501988996 0.778962023198965 0.048005432 0.09767118 prediction 0.50252104241994 Functional Gain - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4853789 chr12:4853790 nonsynonymous SNV 0.965 4 22 hm5C_associated_SNPs_108121 0 0 0 0 1 GALNT8 chr12:4853866 5'GT 4853866 Upstream 77bp
chr13 20532865 20532865 1 + T A rs528228893 20532861 + 20532841 20532881 41 GGCCGCGCCGCCGCCTCCTCCGCCTCCTCCTCCTCACCAGC GGCCGCGCCGCCGCCTCCTCCGCCACCTCCTCCTCACCAGC < 41bp 0.478811801358238 0.751235074538419 0.45902896 0.81511843 prediction 0.502470149076839 Functional Gain - ZMYM2 ENSG00000121741 UTR5 Human protein_coding chr13:20532861 chr13:20532865 . . 0 25 hm5C_associated_SNPs_108127 0 0 0 0 1 ZMYM2 chr13:20532911 5'GT 20532911 Upstream 47bp
chr11 124502023 124502023 1 + C A UCEC 124502019 + 124501999 124502039 41 CCTCCCAGAGCTTCAGCCTGCAGCCTTTGTGTCTTCTTACC CCTCCCAGAGCTTCAGCCTGCAGCATTTGTGTCTTCTTACC < 41bp 0.349763984587218 0.751223503411559 0.16550657 0.26132 prediction 0.502447006823118 Functional Gain - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502019 chr11:124502023 synonymous SNV . 0 25 hm5C_associated_SNPs_108130 0 0 1 0 1 TBRG1 chr11:124501989 3'AG 124501989 Downstream 35bp
chr7 5336621 5336621 1 + C G LIHC 5336620 + 5336600 5336640 41 TCCTCACGAAGCTGCTGCTGCCCGACGAGCGCGCCAGCACG TCCTCACGAAGCTGCTGCTGCGCGACGAGCGCGCCAGCACG < 41bp 0.605354287608263 0.856577084807291 0.17243236 0.2779864 prediction 0.502445594398056 Functional Gain - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5336620 chr7:5336621 nonsynonymous SNV 0.994 0 22 hm5C_associated_SNPs_108131 0 0 1 0 1 SLC29A4 chr7:5336567 3'AG 5336567 Downstream 55bp
chr3 40429586 40429586 1 + C A rs78588637 40429582 + 40429562 40429602 41 TGACCCGCCAACCATGTGAGCAAGCAGGTTAGTATCTCTCA TGACCCGCCAACCATGTGAGCAAGAAGGTTAGTATCTCTCA < 41bp 0.347133262966763 0.751216022981977 0.26979268 0.35116878 prediction 0.502432045963954 Functional Gain - ENTPD3 ENSG00000168032 CDS Human antisense chr3:40429582 chr3:40429586 nonsynonymous SNV 0.977 0 25 hm5C_associated_SNPs_108133 0 0 0 0 2 ENTPD3 chr3:40429537 3'AG 40429537 Downstream 50bp
chr3 40429586 40429586 1 + C A rs78588637 40429582 + 40429562 40429602 41 TGACCCGCCAACCATGTGAGCAAGCAGGTTAGTATCTCTCA TGACCCGCCAACCATGTGAGCAAGAAGGTTAGTATCTCTCA < 41bp 0.347133262966763 0.751216022981977 0.26979268 0.35116878 prediction 0.502432045963954 Functional Gain - ENTPD3 ENSG00000168032 CDS Human protein_coding chr3:40429582 chr3:40429586 nonsynonymous SNV 0.977 0 25 hm5C_associated_SNPs_108133 0 0 0 0 2 ENTPD3 chr3:40429588 5'GT 40429588 Upstream 3bp
chr6 34738120 34738120 1 + C T SKCM 34738119 + 34738099 34738139 41 ACCCCATATGGGGGGCCCTCCCATGATGCCAATGATGGGCC ACCCCATATGGGGGGCCCTCCTATGATGCCAATGATGGGCC < 41bp 0.512370203089029 0.763581344205099 0.36790246 0.31085604 prediction 0.502422282232139 Functional Gain - SNRPC ENSG00000124562 CDS Human protein_coding chr6:34738119 chr6:34738120 synonymous SNV . 0 22 hm5C_associated_SNPs_108135 0 0 1 0 2 SNRPC chr6:34738068 3'AG 34738068 Downstream 53bp
chr6 34738120 34738120 1 + C T SKCM 34738119 + 34738099 34738139 41 ACCCCATATGGGGGGCCCTCCCATGATGCCAATGATGGGCC ACCCCATATGGGGGGCCCTCCTATGATGCCAATGATGGGCC < 41bp 0.512370203089029 0.763581344205099 0.36790246 0.31085604 prediction 0.502422282232139 Functional Gain - SNRPC ENSG00000124562 CDS Human protein_coding chr6:34738119 chr6:34738120 synonymous SNV . 0 22 hm5C_associated_SNPs_108135 0 0 1 0 2 SNRPC chr6:34738172 5'GT 34738172 Upstream 53bp
chr2 74781883 74781883 1 + T G UCEC 74781881 + 74781861 74781901 41 CGGAAGGAACCGCCGGGGGCCATGGACGGAGCAGTGATGGA CGGAAGGAACCGCCGGGGGCCAGGGACGGAGCAGTGATGGA < 41bp 0.407158951497456 0.751202100509775 0.70859283 0.8940549 prediction 0.50240420101955 Functional Gain - DOK1 ENSG00000115325 CDS Human protein_coding chr2:74781881 chr2:74781883 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_108137 0 0 0 0 1 DOK1 chr2:74781941 5'GT 74781941 Upstream 59bp
chr9 131271228 131271228 1 + C T COAD 131271227 + 131271207 131271247 41 GGGTGGTAGAGCACGTCCTACCCCATATGCAGGAGAACCAA GGGTGGTAGAGCACGTCCTACTCCATATGCAGGAGAACCAA < 41bp 0.543504851860343 0.794695212986437 0.08542925 0.9387675 prediction 0.502380722252188 Functional Gain - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131271227 chr9:131271228 nonsynonymous SNV 0.058 1 22 hm5C_associated_SNPs_108139 0 0 0 0 1 GLE1 chr9:131271155 3'AG 131271155 Downstream 74bp
chr10 12203088 12203088 1 + T C STAD 12203086 + 12203066 12203106 41 ATGTGCATTCTTCTCTAAGACATGGATTGAAGTGTCTGGTT ATGTGCATTCTTCTCTAAGACACGGATTGAAGTGTCTGGTT < 41bp 0.481395416100621 0.75118672504939 0.01695028 0.010368466 prediction 0.502373450098781 Functional Gain - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12203086 chr10:12203088 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_108141 0 0 1 2 1 SEC61A2 chr10:12203120 5'GT 12203120 Upstream 33bp
chr16 67913992 67913992 1 + C T SKCM 67913991 + 67913971 67914011 41 CTGAGGAGCTGACCTTGAGCCCCAAGCTGCAGCTGGATGGC CTGAGGAGCTGACCTTGAGCCTCAAGCTGCAGCTGGATGGC < 41bp 0.52646603674782 0.777650057314265 0.0643616 0.14258888 prediction 0.502368041132889 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67913991 chr16:67913992 nonsynonymous SNV 0.983 3 22 hm5C_associated_SNPs_108142 0 0 1 0 1 EDC4 chr16:67913966 3'AG 67913966 Downstream 27bp
chr1 21902329 21902329 1 + C A LUAD 21902328 + 21902308 21902348 41 GCAGGCAGGCAGCTTGACCTCCTCGGAAGACACTCTGACCG GCAGGCAGGCAGCTTGACCTCATCGGAAGACACTCTGACCG < 41bp 0.503160577650206 0.754343265474788 0.2522235 0.3370511 prediction 0.502365375649164 Functional Gain - ALPL ENSG00000162551 CDS Human protein_coding chr1:21902328 chr1:21902329 synonymous SNV . 0 22 hm5C_associated_SNPs_108143 0 0 0 0 1 ALPL chr1:21902417 5'GT 21902417 Upstream 89bp
chr19 36357429 36357429 1 + C A UCEC 36357425 + 36357405 36357445 41 ATGGAAGAGTCCTGGGATCTCCAACTTGCCATAATGGATTG ATGGAAGAGTCCTGGGATCTCCAAATTGCCATAATGGATTG < 41bp 0.355182719087685 0.751179170706664 0.05449605 0.13475373 prediction 0.502358341413327 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36357425 chr19:36357429 nonsynonymous SNV 0.010 1 25 hm5C_associated_SNPs_108147 0 0 0 0 1 KIRREL2 chr19:36357367 3'AG 36357367 Downstream 63bp
chr9 91963110 91963110 1 + C A THCA 91963109 + 91963089 91963129 41 TGGTGGTGATGACCAGTTTCCCGAGCAGGCAGAGCTGTCAG TGGTGGTGATGACCAGTTTCCAGAGCAGGCAGAGCTGTCAG < 41bp 0.522590638862703 0.773763553196328 0.48815513 0.9010569 prediction 0.50234582866725 Functional Gain - SECISBP2 ENSG00000187742 CDS Human protein_coding chr9:91963109 chr9:91963110 synonymous SNV . 0 22 hm5C_associated_SNPs_108148 0 0 1 0 1 SECISBP2 chr9:91963129 5'GT 91963129 Upstream 20bp
chr19 4950704 4950704 1 + C A ACC 4950700 + 4950680 4950720 41 GGACTGGCGGTCGGGGAAGCCGGTCAGGGTGGTGCGCAATG GGACTGGCGGTCGGGGAAGCCGGTAAGGGTGGTGCGCAATG < 41bp 0.337761916607573 0.751162576060568 0.8607297 0.8896453 prediction 0.502325152121136 Functional Gain - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4950700 chr19:4950704 . . 0 25 hm5C_associated_SNPs_108151 0 0 0 0 2 UHRF1 chr19:4950623 3'AG 4950623 Downstream 82bp
chr19 4950704 4950704 1 + C A ACC 4950700 + 4950680 4950720 41 GGACTGGCGGTCGGGGAAGCCGGTCAGGGTGGTGCGCAATG GGACTGGCGGTCGGGGAAGCCGGTAAGGGTGGTGCGCAATG < 41bp 0.337761916607573 0.751162576060568 0.8607297 0.8896453 prediction 0.502325152121136 Functional Gain - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4950700 chr19:4950704 . . 0 25 hm5C_associated_SNPs_108151 0 0 0 0 2 UHRF1 chr19:4950785 5'GT 4950785 Upstream 82bp
chr1 112998647 112998647 1 + T A STAD 112998643 + 112998623 112998663 41 AGGAGCGCTCCCGCCACAAGCAGCTCTCATCCATGCTAGTG AGGAGCGCTCCCGCCACAAGCAGCACTCATCCATGCTAGTG < 41bp 0.43376170010152 0.751159268315402 0.4813768 0.73947537 prediction 0.502318536630804 Functional Gain - CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112998643 chr1:112998647 nonsynonymous SNV 0.953 4 25 hm5C_associated_SNPs_108153 0 0 0 0 1 CTTNBP2NL chr1:112998553 3'AG 112998553 Downstream 95bp
chr4 56236098 56236098 1 + T C SKCM 56236096 + 56236076 56236116 41 GAGCTGATGATCTACGTTTCCATGGCCGTCACCTTTGGGTT GAGCTGATGATCTACGTTTCCACGGCCGTCACCTTTGGGTT < 41bp 0.538903294217767 0.790059025970018 0.61193985 0.5515719 prediction 0.502311463504501 Functional Gain - SRD5A3 ENSG00000128039 CDS Human protein_coding chr4:56236096 chr4:56236098 nonsynonymous SNV 0.849 2 23 hm5C_associated_SNPs_108155 0 0 1 0 1 SRD5A3 chr4:56235999 3'AG 56235999 Downstream 100bp
chr1 172414292 172414292 1 + C A UCEC 172414291 + 172414271 172414311 41 AGCCATTAGTGCTCAGCCTTCCCAGAAGGTAACCTCTCAGC AGCCATTAGTGCTCAGCCTTCACAGAAGGTAACCTCTCAGC < 41bp 0.491019016736335 0.751139427914066 0.2480261 0.4376635 prediction 0.502278855828131 Functional Gain - C1orf105 ENSG00000180999 CDS Human protein_coding chr1:172414291 chr1:172414292 nonsynonymous SNV 0.926 3 22 hm5C_associated_SNPs_108158 0 0 0 0 2 C1orf105 chr1:172414213 3'AG 172414213 Downstream 80bp
chr1 172414292 172414292 1 + C A UCEC 172414291 + 172414271 172414311 41 AGCCATTAGTGCTCAGCCTTCCCAGAAGGTAACCTCTCAGC AGCCATTAGTGCTCAGCCTTCACAGAAGGTAACCTCTCAGC < 41bp 0.491019016736335 0.751139427914066 0.2480261 0.4376635 prediction 0.502278855828131 Functional Gain - C1orf105 ENSG00000180999 CDS Human protein_coding chr1:172414291 chr1:172414292 nonsynonymous SNV 0.926 3 22 hm5C_associated_SNPs_108158 0 0 0 0 2 C1orf105 chr1:172414298 5'GT 172414298 Upstream 7bp
chr16 31500071 31500071 1 + C A LUAD 31500070 + 31500050 31500090 41 CTGCGGCCACGCGCCGGCGACCGCGAGCTGCTGCTGGTGGG CTGCGGCCACGCGCCGGCGACAGCGAGCTGCTGCTGGTGGG < 41bp 0.49905762390337 0.751133486222325 0.2321012 0.4414056 prediction 0.502266972444649 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500070 chr16:31500071 nonsynonymous SNV 0.235 2 22 hm5C_associated_SNPs_108160 0 0 0 0 1 SLC5A2 chr16:31500093 5'GT 31500093 Upstream 23bp
chr20 37634873 37634873 1 + C A UCS 37634872 + 37634852 37634892 41 GACTGTGGCTTTGTGAAACTCCGAGCCTACAATCCCAGGAC GACTGTGGCTTTGTGAAACTCAGAGCCTACAATCCCAGGAC < 41bp 0.518518543555846 0.769646698273495 0.33501843 0.654546 prediction 0.502256309435298 Functional Gain - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37634872 chr20:37634873 synonymous SNV . 0 22 hm5C_associated_SNPs_108161 0 0 1 0 1 DHX35 chr20:37634789 3'AG 37634789 Downstream 85bp
chr17 78196524 78196524 1 + T G KIRC 78196521 + 78196501 78196541 41 GGGCACCTCCCGGGATGTGACTCTGGGCCCCACCGCCATTA GGGCACCTCCCGGGATGTGACTCGGGGCCCCACCGCCATTA < 41bp 0.665900945631264 0.917022754572155 0.29332185 0.7878685 prediction 0.502243617881781 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78196521 chr17:78196524 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_108163 0 0 1 0 1 SLC26A11 chr17:78196454 3'AG 78196454 Downstream 71bp
chr2 112725805 112725805 1 + C T LUSC 112725804 + 112725784 112725824 41 TCCTGGTTTTGATGGATACTCCCCGTTCAGGAATTGCAGCA TCCTGGTTTTGATGGATACTCTCCGTTCAGGAATTGCAGCA < 41bp 0.496738492451931 0.751092637932912 0.044419795 0.082007945 prediction 0.502185275865825 Functional Gain - MERTK ENSG00000153208 CDS Human protein_coding chr2:112725804 chr2:112725805 synonymous SNV . 0 22 hm5C_associated_SNPs_108166 0 0 1 0 2 MERTK chr2:112725714 3'AG 112725714 Downstream 92bp
chr2 112725805 112725805 1 + C T LUSC 112725804 + 112725784 112725824 41 TCCTGGTTTTGATGGATACTCCCCGTTCAGGAATTGCAGCA TCCTGGTTTTGATGGATACTCTCCGTTCAGGAATTGCAGCA < 41bp 0.496738492451931 0.751092637932912 0.044419795 0.082007945 prediction 0.502185275865825 Functional Gain - MERTK ENSG00000153208 CDS Human protein_coding chr2:112725804 chr2:112725805 synonymous SNV . 0 22 hm5C_associated_SNPs_108166 0 0 1 0 2 MERTK chr2:112725829 5'GT 112725829 Upstream 25bp
chr16 67006828 67006828 1 + C A LIHC 67006827 + 67006807 67006847 41 AACAATATCTGGAGATCAACCCAGTGCCACGGGCCGGACAG AACAATATCTGGAGATCAACCAAGTGCCACGGGCCGGACAG < 41bp 0.491242123855116 0.751088297037781 0.7090554 0.73248154 prediction 0.502176594075562 Functional Gain - CES3 ENSG00000172828 CDS Human protein_coding chr16:67006827 chr16:67006828 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_108167 0 0 1 0 1 CES3 chr16:67006757 3'AG 67006757 Downstream 72bp
chr4 159568032 159568032 1 + T G UCEC 159568029 + 159568009 159568049 41 AATACAATAAGCATGCGCAGCTGTGGATGGAGAGTACTCAT AATACAATAAGCATGCGCAGCTGGGGATGGAGAGTACTCAT < 41bp 0.386393263227359 0.75108263625302 0.03321746 0.22737366 prediction 0.50216527250604 Functional Gain - RXFP1 ENSG00000171509 CDS Human protein_coding chr4:159568029 chr4:159568032 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_108169 0 0 0 0 1 RXFP1 chr4:159567943 3'AG 159567943 Downstream 90bp
chr6 7568069 7568069 1 + T C COAD 7568067 + 7568047 7568087 41 CTGAAGGGGCTCCAGGACTCCATCAGGAAGAAGTACCCCTG CTGAAGGGGCTCCAGGACTCCACCAGGAAGAAGTACCCCTG < 41bp 0.459577732043814 0.751064204888022 0.1008732 0.19276878 prediction 0.502128409776044 Functional Gain - DSP ENSG00000096696 CDS Human protein_coding chr6:7568067 chr6:7568069 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_108172 0 0 1 0 2 DSP chr6:7568014 3'AG 7568014 Downstream 56bp
chr6 7568069 7568069 1 + T C COAD 7568067 + 7568047 7568087 41 CTGAAGGGGCTCCAGGACTCCATCAGGAAGAAGTACCCCTG CTGAAGGGGCTCCAGGACTCCACCAGGAAGAAGTACCCCTG < 41bp 0.459577732043814 0.751064204888022 0.1008732 0.19276878 prediction 0.502128409776044 Functional Gain - DSP ENSG00000096696 CDS Human protein_coding chr6:7568067 chr6:7568069 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_108172 0 0 1 0 2 DSP chr6:7568139 5'GT 7568139 Upstream 71bp
chr11 61490364 61490364 1 + T C UCEC 61490362 + 61490342 61490382 41 ATCGAGTTCATCTACGCCATCGTGGGCATCGTCTGGCTCAC ATCGAGTTCATCTACGCCATCGCGGGCATCGTCTGGCTCAC < 41bp 0.513118330459479 0.764173562328336 0.8274336 0.7623782 prediction 0.502110463737714 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61490362 chr11:61490364 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_108173 0 0 0 0 2 DAGLA chr11:61490331 3'AG 61490331 Downstream 34bp
chr11 61490364 61490364 1 + T C UCEC 61490362 + 61490342 61490382 41 ATCGAGTTCATCTACGCCATCGTGGGCATCGTCTGGCTCAC ATCGAGTTCATCTACGCCATCGCGGGCATCGTCTGGCTCAC < 41bp 0.513118330459479 0.764173562328336 0.8274336 0.7623782 prediction 0.502110463737714 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61490362 chr11:61490364 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_108173 0 0 0 0 2 DAGLA chr11:61490432 5'GT 61490432 Upstream 69bp
chr22 41527608 41527608 1 + C T SKCM 41527607 + 41527587 41527627 41 ATCAGCAGCCTGGGCAGTCTCCCCAAGGCATGCGGCCCATG ATCAGCAGCCTGGGCAGTCTCTCCAAGGCATGCGGCCCATG < 41bp 0.556308713559396 0.807358868168791 0.09594473 0.9616643 prediction 0.502100309218791 Functional Gain - EP300 ENSG00000100393 CDS Human protein_coding chr22:41527607 chr22:41527608 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_108174 0 0 1 0 1 EP300 chr22:41527637 5'GT 41527637 Upstream 30bp
chr19 50909490 50909490 1 + C A UCEC 50909489 + 50909469 50909509 41 GCCGGCCTTTGCTCCAACATCCGGGACTCTTCATTCCAGTC GCCGGCCTTTGCTCCAACATCAGGGACTCTTCATTCCAGTC < 41bp 0.486255332012095 0.751047706039604 0.35304207 0.871279 prediction 0.502095412079208 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50909489 chr19:50909490 synonymous SNV . 0 22 hm5C_associated_SNPs_108175 0 0 1 0 2 POLD1 chr19:50909439 3'AG 50909439 Downstream 52bp
chr19 50909490 50909490 1 + C A UCEC 50909489 + 50909469 50909509 41 GCCGGCCTTTGCTCCAACATCCGGGACTCTTCATTCCAGTC GCCGGCCTTTGCTCCAACATCAGGGACTCTTCATTCCAGTC < 41bp 0.486255332012095 0.751047706039604 0.35304207 0.871279 prediction 0.502095412079208 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50909489 chr19:50909490 synonymous SNV . 0 22 hm5C_associated_SNPs_108175 0 0 1 0 2 POLD1 chr19:50909579 5'GT 50909579 Upstream 90bp
chr19 41889820 41889820 1 + C G rs536286607 41889816 + 41889796 41889836 41 ACTGTGAACCCTGAGGCCGGCAGCCCAGCAAATCTGTGGGC ACTGTGAACCCTGAGGCCGGCAGCGCAGCAAATCTGTGGGC < 41bp 0.511167604281199 0.762201752026532 0.5749143 0.5694078 prediction 0.502068295490667 Functional Gain - TMEM91 ENSG00000142046 UTR3 Human protein_coding chr19:41889816 chr19:41889820 . . 0 25 hm5C_associated_SNPs_108177 0 0 1 0 3 TMEM91 chr19:41889768 3'AG 41889768 Downstream 53bp
chr19 41889820 41889820 1 + C G rs536286607 41889816 + 41889796 41889836 41 ACTGTGAACCCTGAGGCCGGCAGCCCAGCAAATCTGTGGGC ACTGTGAACCCTGAGGCCGGCAGCGCAGCAAATCTGTGGGC < 41bp 0.511167604281199 0.762201752026532 0.5749143 0.5694078 prediction 0.502068295490667 Functional Gain - TMEM91 ENSG00000142046 UTR3 Human protein_coding chr19:41889816 chr19:41889820 . . 0 25 hm5C_associated_SNPs_108177 0 0 1 0 3 TMEM91 chr19:41889779 3'AG 41889779 Downstream 42bp
chr19 41889820 41889820 1 + C G rs536286607 41889816 + 41889796 41889836 41 ACTGTGAACCCTGAGGCCGGCAGCCCAGCAAATCTGTGGGC ACTGTGAACCCTGAGGCCGGCAGCGCAGCAAATCTGTGGGC < 41bp 0.511167604281199 0.762201752026532 0.5749143 0.5694078 prediction 0.502068295490667 Functional Gain - TMEM91 ENSG00000142046 UTR3 Human protein_coding chr19:41889816 chr19:41889820 . . 0 25 hm5C_associated_SNPs_108177 0 0 1 0 3 TMEM91 chr19:41889791 3'AG 41889791 Downstream 30bp
chr3 113342323 113342323 1 + C A COAD 113342319 + 113342299 113342339 41 CCCAGGGACTTTGCTTCCTACATGCTGGGCATCTTCATCTG CCCAGGGACTTTGCTTCCTACATGATGGGCATCTTCATCTG < 41bp 0.329995099886155 0.751008964134587 0.13222721 0.18638274 prediction 0.502017928269174 Functional Gain - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113342319 chr3:113342323 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_108179 0 0 0 0 2 SIDT1 chr3:113342274 3'AG 113342274 Downstream 50bp
chr3 113342323 113342323 1 + C A COAD 113342319 + 113342299 113342339 41 CCCAGGGACTTTGCTTCCTACATGCTGGGCATCTTCATCTG CCCAGGGACTTTGCTTCCTACATGATGGGCATCTTCATCTG < 41bp 0.329995099886155 0.751008964134587 0.13222721 0.18638274 prediction 0.502017928269174 Functional Gain - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113342319 chr3:113342323 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_108179 0 0 0 0 2 SIDT1 chr3:113342379 5'GT 113342379 Upstream 57bp
chr15 80452205 80452205 1 + C A rs567587933 80452204 + 80452184 80452224 41 AGCCAGGCTCAGAGATGACACCGAACTTCGGAAGTGGTGAG AGCCAGGCTCAGAGATGACACAGAACTTCGGAAGTGGTGAG < 41bp 0.525695733695002 0.776702907510804 0.07088953 0.16526556 prediction 0.502014347631603 Functional Gain - FAH ENSG00000103876 CDS Human protein_coding chr15:80452204 chr15:80452205 synonymous SNV . 0 22 hm5C_associated_SNPs_108180 0 0 0 0 1 FAH chr15:80452219 5'GT 80452219 Upstream 15bp
chr1 150477121 150477121 1 + C A UCEC 150477120 + 150477100 150477140 41 CTTTCAAGGCAGGCGGGTGCCCTGGAGCGTCCAGTCCTCAT CTTTCAAGGCAGGCGGGTGCCATGGAGCGTCCAGTCCTCAT < 41bp 0.508800686449449 0.759800853028357 0.14909351 0.38106713 prediction 0.502000333157817 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150477120 chr1:150477121 nonsynonymous SNV 0.186 0 22 hm5C_associated_SNPs_108181 0 0 1 0 2 TARS2 chr1:150477108 3'AG 150477108 Downstream 14bp
chr1 150477121 150477121 1 + C A UCEC 150477120 + 150477100 150477140 41 CTTTCAAGGCAGGCGGGTGCCCTGGAGCGTCCAGTCCTCAT CTTTCAAGGCAGGCGGGTGCCATGGAGCGTCCAGTCCTCAT < 41bp 0.508800686449449 0.759800853028357 0.14909351 0.38106713 prediction 0.502000333157817 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150477120 chr1:150477121 nonsynonymous SNV 0.186 0 22 hm5C_associated_SNPs_108181 0 0 1 0 2 TARS2 chr1:150477209 5'GT 150477209 Upstream 89bp
chr2 26407195 26407195 1 + C A UCEC 26407194 + 26407174 26407214 41 CTTATGGGCCAGGCGGAGATCCTGTGCGCCAAGACCACCAA CTTATGGGCCAGGCGGAGATCATGTGCGCCAAGACCACCAA < 41bp 0.514656727907919 0.765633564152754 0.22939223 0.73329026 prediction 0.50195367248967 Functional Gain - GAREM2 ENSG00000157833 CDS Human protein_coding chr2:26407194 chr2:26407195 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_108185 0 0 0 0 1 GAREM2 chr2:26407102 3'AG 26407102 Downstream 94bp
chr17 38172768 38172768 1 + C G LUSC 38172764 + 38172744 38172784 41 TGCTTGAGCCAACTCCATAGCGGCCTTTTCCTCTACCAGGG TGCTTGAGCCAACTCCATAGCGGCGTTTTCCTCTACCAGGG < 41bp 0.595333828237579 0.84630644859609 0.8814182 0.96082604 prediction 0.501945240717022 Functional Gain - CSF3 ENSG00000108342 CDS Human protein_coding chr17:38172764 chr17:38172768 nonsynonymous SNV 0.089 3 25 hm5C_associated_SNPs_108187 0 0 0 0 1 CSF3 chr17:38172738 3'AG 38172738 Downstream 31bp
chr17 56345247 56345247 1 + C G LUSC 56345246 + 56345226 56345266 41 CTGTGACAACACCCGCATCACCAAGGTCCCACGGGACCCAT CTGTGACAACACCCGCATCACGAAGGTCCCACGGGACCCAT < 41bp 0.437863813304057 0.750967282276988 0.18527275 0.7824851 prediction 0.501934564553976 Functional Gain - LPO ENSG00000167419 CDS Human protein_coding chr17:56345246 chr17:56345247 synonymous SNV . 0 22 hm5C_associated_SNPs_108190 0 0 0 0 1 LPO chr17:56345148 3'AG 56345148 Downstream 100bp
chr19 56544077 56544077 1 + C T SKCM 56544076 + 56544056 56544096 41 CTGGACCTGGGCAGCAGCATCCTGACAGAGCGGGCCATGAA CTGGACCTGGGCAGCAGCATCTTGACAGAGCGGGCCATGAA < 41bp 0.503961057497084 0.754925785188577 0.12479484 0.2050465 prediction 0.501929455382985 Functional Gain - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56544076 chr19:56544077 synonymous SNV . 0 22 hm5C_associated_SNPs_108191 0 0 0 0 1 NLRP5 chr19:56544147 5'GT 56544147 Upstream 71bp
chr11 66291309 66291309 1 + C T STAD 66291308 + 66291288 66291328 41 GGGCTGGCCAATGGAGAGGTCCGCATTTATCGTGACAAGGC GGGCTGGCCAATGGAGAGGTCTGCATTTATCGTGACAAGGC < 41bp 0.516599313485905 0.767550023266095 0.113235176 0.2078737 prediction 0.50190141956038 Functional Gain - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66291308 chr11:66291309 nonsynonymous SNV 0.989 2 22 hm5C_associated_SNPs_108193 0 0 0 0 1 BBS1 chr11:66291353 5'GT 66291353 Upstream 45bp
chr19 18305894 18305894 1 + C A THCA 18305893 + 18305873 18305913 41 TACCTGTCCTACTTGAAGTACCGGGTGAGTGTGGAGGGCAT TACCTGTCCTACTTGAAGTACAGGGTGAGTGTGGAGGGCAT < 41bp 0.521684434466455 0.772624123200879 0.5309118 0.36753553 prediction 0.501879377468847 Functional Gain - MPV17L2 ENSG00000254858 CDS Human protein_coding chr19:18305893 chr19:18305894 synonymous SNV . 0 22 hm5C_associated_SNPs_108194 0 0 1 0 1 MPV17L2 chr19:18305896 5'GT 18305896 Upstream 3bp
chr13 24242166 24242166 1 + C T rs35041805 24242165 + 24242145 24242185 41 TGCTGTGAGGAGGCCTGCAGCCCCAACCCGGCGACTCTTGG TGCTGTGAGGAGGCCTGCAGCTCCAACCCGGCGACTCTTGG < 41bp 0.556806286822923 0.807745253854486 0.35927376 0.9129635 prediction 0.501877934063126 Functional Gain - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24242165 chr13:24242166 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_108195 0 0 1 0 2 TNFRSF19 chr13:24242119 3'AG 24242119 Downstream 48bp
chr13 24242166 24242166 1 + C T rs35041805 24242165 + 24242145 24242185 41 TGCTGTGAGGAGGCCTGCAGCCCCAACCCGGCGACTCTTGG TGCTGTGAGGAGGCCTGCAGCTCCAACCCGGCGACTCTTGG < 41bp 0.556806286822923 0.807745253854486 0.35927376 0.9129635 prediction 0.501877934063126 Functional Gain - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24242165 chr13:24242166 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_108195 0 0 1 0 2 TNFRSF19 chr13:24242221 5'GT 24242221 Upstream 56bp
chr19 55177320 55177320 1 + T A SKCM 55177316 + 55177296 55177336 41 GGGTCTTGGTGGTCTCCATCCTGCTTCTCTCCCTCCTCCTC GGGTCTTGGTGGTCTCCATCCTGCATCTCTCCCTCCTCCTC < 41bp 0.62407086056986 0.875009566636075 0.07007429 0.07745752 prediction 0.50187741213243 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55177316 chr19:55177320 nonsynonymous SNV 0.062 2 25 hm5C_associated_SNPs_108196 0 0 0 0 2 LILRB4 chr19:55177266 3'AG 55177266 Downstream 55bp
chr19 55177320 55177320 1 + T A SKCM 55177316 + 55177296 55177336 41 GGGTCTTGGTGGTCTCCATCCTGCTTCTCTCCCTCCTCCTC GGGTCTTGGTGGTCTCCATCCTGCATCTCTCCCTCCTCCTC < 41bp 0.62407086056986 0.875009566636075 0.07007429 0.07745752 prediction 0.50187741213243 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55177316 chr19:55177320 nonsynonymous SNV 0.062 2 25 hm5C_associated_SNPs_108196 0 0 0 0 2 LILRB4 chr19:55177382 5'GT 55177382 Upstream 63bp
chr1 183200165 183200165 1 + C A rs62640907 183200164 + 183200144 183200184 41 ATGGCACCTGTGTTTGCAAGCCAGGATTTGGTGGCCCCAAC ATGGCACCTGTGTTTGCAAGCAAGGATTTGGTGGCCCCAAC < 41bp 0.491004682358054 0.750936838299488 0.5405312 0.7736535 prediction 0.501873676598976 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183200164 chr1:183200165 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_108198 0 0 0 0 2 LAMC2 chr1:183200096 3'AG 183200096 Downstream 70bp
chr1 183200165 183200165 1 + C A rs62640907 183200164 + 183200144 183200184 41 ATGGCACCTGTGTTTGCAAGCCAGGATTTGGTGGCCCCAAC ATGGCACCTGTGTTTGCAAGCAAGGATTTGGTGGCCCCAAC < 41bp 0.491004682358054 0.750936838299488 0.5405312 0.7736535 prediction 0.501873676598976 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183200164 chr1:183200165 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_108198 0 0 0 0 2 LAMC2 chr1:183200238 5'GT 183200238 Upstream 74bp
chr19 35760579 35760579 1 + C T UCEC 35760578 + 35760558 35760598 41 CACAACATCCAGTACCAGTTCCGCACAGAGACAAATGGAGG CACAACATCCAGTACCAGTTCTGCACAGAGACAAATGGAGG < 41bp 0.502293882428547 0.753228220270909 0.23133183 0.38687956 prediction 0.501868675684723 Functional Gain - USF2 ENSG00000105698 CDS Human protein_coding chr19:35760578 chr19:35760579 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_108199 0 0 1 0 1 USF2 chr19:35760602 5'GT 35760602 Upstream 24bp
chr10 115340448 115340448 1 + C G PCPG 115340447 + 115340427 115340467 41 GATGTCTCAGCCTGCTCAGCCCAGGGTAAAGGCCATGGCTG GATGTCTCAGCCTGCTCAGCCGAGGGTAAAGGCCATGGCTG < 41bp 0.60174196104447 0.852669088529026 0.37545714 0.8860787 prediction 0.501854254969113 Functional Gain - HABP2 ENSG00000148702 CDS Human protein_coding chr10:115340447 chr10:115340448 nonsynonymous SNV 0.272 0 22 hm5C_associated_SNPs_108203 0 0 0 0 1 HABP2 chr10:115340354 3'AG 115340354 Downstream 95bp
chr3 9757025 9757025 1 + C T LUSC 9757024 + 9757004 9757044 41 TACCGGGAGCTGAGCAAGGCCCAGAACCAGTTCACAGTATA TACCGGGAGCTGAGCAAGGCCTAGAACCAGTTCACAGTATA < 41bp 0.519151955683728 0.770078550307779 0.40843248 0.38199857 prediction 0.501853189248102 Functional Gain - CPNE9 ENSG00000144550 CDS Human protein_coding chr3:9757024 chr3:9757025 stopgain 1.000 1 22 hm5C_associated_SNPs_108204 0 0 0 0 2 CPNE9 chr3:9756973 3'AG 9756973 Downstream 53bp
chr3 9757025 9757025 1 + C T LUSC 9757024 + 9757004 9757044 41 TACCGGGAGCTGAGCAAGGCCCAGAACCAGTTCACAGTATA TACCGGGAGCTGAGCAAGGCCTAGAACCAGTTCACAGTATA < 41bp 0.519151955683728 0.770078550307779 0.40843248 0.38199857 prediction 0.501853189248102 Functional Gain - CPNE9 ENSG00000144550 CDS Human protein_coding chr3:9757024 chr3:9757025 stopgain 1.000 1 22 hm5C_associated_SNPs_108204 0 0 0 0 2 CPNE9 chr3:9757048 5'GT 9757048 Upstream 24bp
chr2 27245168 27245168 1 + C A UCEC 27245164 + 27245144 27245184 41 ATGCTTGCATGGGTCAACGACTCCCTGCACCTCAACTATAC ATGCTTGCATGGGTCAACGACTCCATGCACCTCAACTATAC < 41bp 0.307448566613866 0.750924588545823 0.27043417 0.9642017 prediction 0.501849177091646 Functional Gain - MAPRE3 ENSG00000084764 CDS Human protein_coding chr2:27245164 chr2:27245168 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_108205 0 0 1 0 2 MAPRE3 chr2:27245080 3'AG 27245080 Downstream 89bp
chr2 27245168 27245168 1 + C A UCEC 27245164 + 27245144 27245184 41 ATGCTTGCATGGGTCAACGACTCCCTGCACCTCAACTATAC ATGCTTGCATGGGTCAACGACTCCATGCACCTCAACTATAC < 41bp 0.307448566613866 0.750924588545823 0.27043417 0.9642017 prediction 0.501849177091646 Functional Gain - MAPRE3 ENSG00000084764 CDS Human protein_coding chr2:27245164 chr2:27245168 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_108205 0 0 1 0 2 MAPRE3 chr2:27245207 5'GT 27245207 Upstream 40bp
chr4 48993541 48993541 1 + C T SKCM 48993540 + 48993520 48993560 41 TCTTGCGCTTGGGGTGTCTTCCTCACTGATAGTGCAAGCTG TCTTGCGCTTGGGGTGTCTTCTTCACTGATAGTGCAAGCTG < 41bp 0.493335279433027 0.750920471784307 0.19491497 0.16957721 prediction 0.501840943568614 Functional Gain - CWH43 ENSG00000109182 CDS Human protein_coding chr4:48993540 chr4:48993541 synonymous SNV . 0 22 hm5C_associated_SNPs_108206 0 0 0 0 2 CWH43 chr4:48993471 3'AG 48993471 Downstream 71bp
chr4 48993541 48993541 1 + C T SKCM 48993540 + 48993520 48993560 41 TCTTGCGCTTGGGGTGTCTTCCTCACTGATAGTGCAAGCTG TCTTGCGCTTGGGGTGTCTTCTTCACTGATAGTGCAAGCTG < 41bp 0.493335279433027 0.750920471784307 0.19491497 0.16957721 prediction 0.501840943568614 Functional Gain - CWH43 ENSG00000109182 CDS Human protein_coding chr4:48993540 chr4:48993541 synonymous SNV . 0 22 hm5C_associated_SNPs_108206 0 0 0 0 2 CWH43 chr4:48993591 5'GT 48993591 Upstream 51bp
chr4 81967791 81967791 1 + C T SKCM 81967790 + 81967770 81967810 41 TGCTCTGGAGCATGCCAGTTCCCCATGCCAAAGGTAGCCAT TGCTCTGGAGCATGCCAGTTCTCCATGCCAAAGGTAGCCAT < 41bp 0.528584348040452 0.779501262879171 0.22896266 0.9399431 prediction 0.501833829677439 Functional Gain - BMP3 ENSG00000152785 CDS Human protein_coding chr4:81967790 chr4:81967791 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_108208 0 0 0 0 1 BMP3 chr4:81967802 5'GT 81967802 Upstream 12bp
chr5 41904484 41904484 1 + C G HNSC 41904480 + 41904460 41904500 41 GATTGTGGCCATGGCGGCCGCAGTCTCTAGTGTGGTGAGAC GATTGTGGCCATGGCGGCCGCAGTGTCTAGTGTGGTGAGAC < 41bp 0.487368940417863 0.750909746141356 0.41860843 0.41141564 prediction 0.501819492282712 Functional Gain - C5orf51 ENSG00000205765 CDS Human protein_coding chr5:41904480 chr5:41904484 synonymous SNV . 0 25 hm5C_associated_SNPs_108209 0 0 1 0 1 C5orf51 chr5:41904569 5'GT 41904569 Upstream 86bp
chr1 155058678 155058678 1 + C A UCEC 155058674 + 155058654 155058694 41 GGCCCCAATGTGAAGATCAACGTGCTGGGTGAGTCTGCGCA GGCCCCAATGTGAAGATCAACGTGATGGGTGAGTCTGCGCA < 41bp 0.351614134123252 0.750905574409466 0.11532572 0.27239984 prediction 0.501811148818931 Functional Gain - EFNA3 ENSG00000143590;ENSG00000251246 CDS Human other chr1:155058674 chr1:155058678 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_108210 0 0 0 0 2 EFNA3 chr1:155058604 3'AG 155058604 Downstream 75bp
chr1 155058678 155058678 1 + C A UCEC 155058674 + 155058654 155058694 41 GGCCCCAATGTGAAGATCAACGTGCTGGGTGAGTCTGCGCA GGCCCCAATGTGAAGATCAACGTGATGGGTGAGTCTGCGCA < 41bp 0.351614134123252 0.750905574409466 0.11532572 0.27239984 prediction 0.501811148818931 Functional Gain - EFNA3 ENSG00000143590;ENSG00000251246 CDS Human other chr1:155058674 chr1:155058678 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_108210 0 0 0 0 2 EFNA3 chr1:155058681 5'GT 155058681 Upstream 4bp
chr1 29639170 29639170 1 + T C STAD 29639168 + 29639148 29639188 41 CTGCTGGCTTTCATCCGGCGCGTGAAGGCCTCCACCCCACC CTGCTGGCTTTCATCCGGCGCGCGAAGGCCTCCACCCCACC < 41bp 0.501569763795089 0.752474487828565 0.28872293 0.25624257 prediction 0.501809448066952 Functional Gain - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29639168 chr1:29639170 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_108212 0 0 0 0 1 PTPRU chr1:29639218 5'GT 29639218 Upstream 49bp
chr2 102849516 102849516 1 + C T SKCM 102849515 + 102849495 102849535 41 CCCTGGTGTTGAATATCCTGCCCGAGGTGTTGGAGAGACAA CCCTGGTGTTGAATATCCTGCTCGAGGTGTTGGAGAGACAA < 41bp 0.490339489229928 0.750902440282237 0.045484245 0.07137188 prediction 0.501804880564473 Functional Gain - IL1RL2 ENSG00000115598 CDS Human protein_coding chr2:102849515 chr2:102849516 nonsynonymous SNV 0.883 4 22 hm5C_associated_SNPs_108213 0 0 0 0 2 IL1RL2 chr2:102849423 3'AG 102849423 Downstream 94bp
chr2 102849516 102849516 1 + C T SKCM 102849515 + 102849495 102849535 41 CCCTGGTGTTGAATATCCTGCCCGAGGTGTTGGAGAGACAA CCCTGGTGTTGAATATCCTGCTCGAGGTGTTGGAGAGACAA < 41bp 0.490339489229928 0.750902440282237 0.045484245 0.07137188 prediction 0.501804880564473 Functional Gain - IL1RL2 ENSG00000115598 CDS Human protein_coding chr2:102849515 chr2:102849516 nonsynonymous SNV 0.883 4 22 hm5C_associated_SNPs_108213 0 0 0 0 2 IL1RL2 chr2:102849584 5'GT 102849584 Upstream 69bp
chr3 52457190 52457190 1 + T A COAD 52457186 + 52457166 52457206 41 GAACATTTCTGCAGAGACAACACCTTGGAAGAGAATCCGGG GAACATTTCTGCAGAGACAACACCATGGAAGAGAATCCGGG < 41bp 0.42422756293223 0.750899252769261 0.095752865 0.17679235 prediction 0.501798505538521 Functional Gain - PHF7 ENSG00000010318 CDS Human protein_coding chr3:52457186 chr3:52457190 nonsynonymous SNV 0.589 2 25 hm5C_associated_SNPs_108214 0 0 0 0 1 PHF7 chr3:52457107 3'AG 52457107 Downstream 84bp
chr11 557618 557618 1 - A T LUSC 557622 - 557602 557642 41 AGGTAGTGACGGCAGAGACTCTGATGGACCCAAGCGACCTC AGGTAGTGACGGCAGAGACTCTGAAGGACCCAAGCGACCTC < 41bp 0.603916616199473 0.854808098148638 0.24247298 0.22851193 prediction 0.501782963898328 Functional Gain - LMNTD2 ENSG00000185522 CDS Human protein_coding chr11:557622 chr11:557618 nonsynonymous SNV 0.020 0 25 hm5C_associated_SNPs_108217 0 0 0 0 2 LMNTD2 chr11:557572 5'GT 557572 Upstream 47bp
chr11 557618 557618 1 - A T LUSC 557622 - 557602 557642 41 AGGTAGTGACGGCAGAGACTCTGATGGACCCAAGCGACCTC AGGTAGTGACGGCAGAGACTCTGAAGGACCCAAGCGACCTC < 41bp 0.603916616199473 0.854808098148638 0.24247298 0.22851193 prediction 0.501782963898328 Functional Gain - LMNTD2 ENSG00000185522 CDS Human protein_coding chr11:557622 chr11:557618 nonsynonymous SNV 0.020 0 25 hm5C_associated_SNPs_108217 0 0 0 0 2 LMNTD2 chr11:557640 3'AG 557640 Downstream 23bp
chr19 19334875 19334875 1 + C A COAD 19334871 + 19334851 19334891 41 CAGCCCGGGACCGCTATGCACTGACCTTCGCTGAGGCCCAG CAGCCCGGGACCGCTATGCACTGAACTTCGCTGAGGCCCAG < 41bp 0.331516861658242 0.750891144533491 0.09491098 0.0817301 prediction 0.501782289066981 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19334871 chr19:19334875 nonsynonymous SNV 0.898 2 25 hm5C_associated_SNPs_108218 0 0 0 0 1 NCAN chr19:19334830 3'AG 19334830 Downstream 46bp
chr2 71190710 71190710 1 + C A CESC 71190706 + 71190686 71190726 41 GTGAGTTTTCTTGTAGATATCACCCACCCTATCCCAGACTT GTGAGTTTTCTTGTAGATATCACCAACCCTATCCCAGACTT < 41bp 0.329370177572911 0.75088204345478 0.024761826 0.081115514 prediction 0.501764086909559 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71190706 chr2:71190710 nonsynonymous SNV 0.991 4 25 hm5C_associated_SNPs_108221 0 0 0 0 2 ATP6V1B1 chr2:71190702 3'AG 71190702 Downstream 9bp
chr2 71190710 71190710 1 + C A CESC 71190706 + 71190686 71190726 41 GTGAGTTTTCTTGTAGATATCACCCACCCTATCCCAGACTT GTGAGTTTTCTTGTAGATATCACCAACCCTATCCCAGACTT < 41bp 0.329370177572911 0.75088204345478 0.024761826 0.081115514 prediction 0.501764086909559 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71190706 chr2:71190710 nonsynonymous SNV 0.991 4 25 hm5C_associated_SNPs_108221 0 0 0 0 2 ATP6V1B1 chr2:71190784 5'GT 71190784 Upstream 75bp
chr9 100840602 100840602 1 + T C STAD 100840600 + 100840580 100840620 41 CCAGCGCATACCCGCTCCAGCCTGAGGACGTCAACCTGCGG CCAGCGCATACCCGCTCCAGCCCGAGGACGTCAACCTGCGG < 41bp 0.505587423839005 0.756462547667408 0.4247873 0.3900537 prediction 0.501750247656804 Functional Gain - NANS ENSG00000095380 CDS Human protein_coding chr9:100840600 chr9:100840602 synonymous SNV . 0 23 hm5C_associated_SNPs_108222 0 0 1 0 1 NANS chr9:100840629 5'GT 100840629 Upstream 28bp
chr15 41865552 41865552 1 + C A THCA 41865551 + 41865531 41865571 41 GTGGCTGACTTCGGACTCTCCCGGAAGATCTACAGTGGGGA GTGGCTGACTTCGGACTCTCCAGGAAGATCTACAGTGGGGA < 41bp 0.522870669112915 0.773743478221528 0.81363213 0.49050623 prediction 0.501745618217225 Functional Gain - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41865551 chr15:41865552 synonymous SNV . 0 22 hm5C_associated_SNPs_108223 0 0 1 0 1 TYRO3 chr15:41865506 3'AG 41865506 Downstream 47bp
chr19 40480725 40480725 1 + T C BLCA 40480723 + 40480703 40480743 41 TGTTGGCAAAGGCGGTGGCACATCACACAACAGGTGAGCCC TGTTGGCAAAGGCGGTGGCACACCACACAACAGGTGAGCCC < 41bp 0.55100673707177 0.801877369285554 0.89509046 0.85010976 prediction 0.501741264427568 Functional Gain - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40480723 chr19:40480725 synonymous SNV . 0 23 hm5C_associated_SNPs_108225 0 0 1 0 2 PSMC4 chr19:40480642 3'AG 40480642 Downstream 84bp
chr19 40480725 40480725 1 + T C BLCA 40480723 + 40480703 40480743 41 TGTTGGCAAAGGCGGTGGCACATCACACAACAGGTGAGCCC TGTTGGCAAAGGCGGTGGCACACCACACAACAGGTGAGCCC < 41bp 0.55100673707177 0.801877369285554 0.89509046 0.85010976 prediction 0.501741264427568 Functional Gain - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40480723 chr19:40480725 synonymous SNV . 0 23 hm5C_associated_SNPs_108225 0 0 1 0 2 PSMC4 chr19:40480735 5'GT 40480735 Upstream 11bp
chr7 143079980 143079980 1 + C G THYM 143079976 + 143079956 143079996 41 GCCTGCAGCCGGGGGCACAGCACCCCTGCCTCCTTGGAAGT GCCTGCAGCCGGGGGCACAGCACCGCTGCCTCCTTGGAAGT < 41bp 0.454708631376005 0.75084019734746 0.17501462 0.20439881 prediction 0.50168039469492 Functional Gain - ZYX ENSG00000159840 CDS Human protein_coding chr7:143079976 chr7:143079980 synonymous SNV . 0 25 hm5C_associated_SNPs_108226 0 0 1 0 1 ZYX chr7:143079894 3'AG 143079894 Downstream 87bp
chr20 44638688 44638688 1 + C G COAD 44638687 + 44638667 44638707 41 GTCCCAGACCTGGGCAGATTCCAAACCTTTGAGGGCGACCT GTCCCAGACCTGGGCAGATTCGAAACCTTTGAGGGCGACCT < 41bp 0.43554661727507 0.750812306844396 0.45404047 0.7908945 prediction 0.501624613688791 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44638687 chr20:44638688 nonsynonymous SNV 0.633 1 22 hm5C_associated_SNPs_108232 0 0 0 0 1 MMP9 chr20:44638737 5'GT 44638737 Upstream 50bp
chr1 78001598 78001598 1 + C T SKCM 78001597 + 78001577 78001617 41 ACCATGACCAACCGCCTTCTCCAAAGGAGCCGGAGCAGCCT ACCATGACCAACCGCCTTCTCTAAAGGAGCCGGAGCAGCCT < 41bp 0.523181905837478 0.773982207399178 0.5353167 0.36392182 prediction 0.501600603123399 Functional Gain - AK5 ENSG00000154027 CDS Human protein_coding chr1:78001597 chr1:78001598 stopgain 0.625 0 22 hm5C_associated_SNPs_108233 0 0 0 0 1 AK5 chr1:78001532 3'AG 78001532 Downstream 67bp
chr1 203452366 203452366 1 + C T LUSC 203452365 + 203452345 203452385 41 TCTCATCTTGGCCTCAGTGGCCCAAGGCCAGCCAACAAGAC TCTCATCTTGGCCTCAGTGGCTCAAGGCCAGCCAACAAGAC < 41bp 0.509283938268663 0.760079239336297 0.22295257 0.60089254 prediction 0.501590602135268 Functional Gain - PRELP ENSG00000188783 CDS Human protein_coding chr1:203452365 chr1:203452366 synonymous SNV . 0 22 hm5C_associated_SNPs_108235 0 0 0 0 1 PRELP chr1:203452297 3'AG 203452297 Downstream 70bp
chr1 158813136 158813136 1 + T G SARC 158813134 + 158813114 158813154 41 TAAACCAGGAAGAAGTGGGTCTTGCGGCACCTGCACCCACC TAAACCAGGAAGAAGTGGGTCTGGCGGCACCTGCACCCACC < 41bp 0.422442964533842 0.750786496100796 0.32168624 0.7569472 prediction 0.501572992201591 Functional Gain - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813134 chr1:158813136 synonymous SNV . 0 23 hm5C_associated_SNPs_108236 0 0 0 0 2 MNDA chr1:158813069 3'AG 158813069 Downstream 68bp
chr1 158813136 158813136 1 + T G SARC 158813134 + 158813114 158813154 41 TAAACCAGGAAGAAGTGGGTCTTGCGGCACCTGCACCCACC TAAACCAGGAAGAAGTGGGTCTGGCGGCACCTGCACCCACC < 41bp 0.422442964533842 0.750786496100796 0.32168624 0.7569472 prediction 0.501572992201591 Functional Gain - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813134 chr1:158813136 synonymous SNV . 0 23 hm5C_associated_SNPs_108236 0 0 0 0 2 MNDA chr1:158813205 5'GT 158813205 Upstream 70bp
chr19 11024627 11024627 1 + C A GBM 11024626 + 11024606 11024646 41 GGTGGAGGAGGTGTCACTCCCCGAGCAGGTGGACATCATCA GGTGGAGGAGGTGTCACTCCCAGAGCAGGTGGACATCATCA < 41bp 0.502249302822852 0.753031377152167 0.4704883 0.89210826 prediction 0.50156414865863 Functional Gain - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11024626 chr19:11024627 synonymous SNV . 0 22 hm5C_associated_SNPs_108237 0 0 1 0 1 CARM1 chr19:11024553 3'AG 11024553 Downstream 75bp
chr1 99470042 99470042 1 - G C STAD 99470043 - 99470023 99470063 41 GGGCCCGGAGGACAGCAGCGCCGTGCCCCCCGTGCTCCTCT GGGCCCGGAGGACAGCAGCGCGGTGCCCCCCGTGCTCCTCT < 41bp 0.457994022542562 0.750775317003328 0.35246533 0.7099215 prediction 0.501550634006655 Functional Gain - PLPPR5 ENSG00000117598 CDS Human protein_coding chr1:99470043 chr1:99470042 synonymous SNV . 0 22 hm5C_associated_SNPs_108239 0 0 0 0 1 PLPPR5 chr1:99469991 5'GT 99469991 Upstream 52bp
chr16 25175976 25175976 1 + C T GBM 25175975 + 25175955 25175995 41 TTACATGACTCCAGAGCAGTCCGCAAACCTCCTGAAGTGGG TTACATGACTCCAGAGCAGTCTGCAAACCTCCTGAAGTGGG < 41bp 0.532287254827956 0.783060346175935 0.25627106 0.45353723 prediction 0.501546182695957 Functional Gain - LCMT1 ENSG00000205629 CDS Human protein_coding chr16:25175975 chr16:25175976 synonymous SNV . 0 22 hm5C_associated_SNPs_108240 0 0 0 0 2 LCMT1 chr16:25175919 3'AG 25175919 Downstream 58bp
chr16 25175976 25175976 1 + C T GBM 25175975 + 25175955 25175995 41 TTACATGACTCCAGAGCAGTCCGCAAACCTCCTGAAGTGGG TTACATGACTCCAGAGCAGTCTGCAAACCTCCTGAAGTGGG < 41bp 0.532287254827956 0.783060346175935 0.25627106 0.45353723 prediction 0.501546182695957 Functional Gain - LCMT1 ENSG00000205629 CDS Human protein_coding chr16:25175975 chr16:25175976 synonymous SNV . 0 22 hm5C_associated_SNPs_108240 0 0 0 0 2 LCMT1 chr16:25176039 5'GT 25176039 Upstream 64bp
chr1 171761229 171761229 1 + C T SKCM 171761228 + 171761208 171761248 41 TCTTTGTCCACGATCATTTTCCAAAGTCCTGCATTGATGCT TCTTTGTCCACGATCATTTTCTAAAGTCCTGCATTGATGCT < 41bp 0.497725230696186 0.750765921041122 0.8925916 0.25262746 prediction 0.501531842082243 Functional Gain - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171761228 chr1:171761229 nonsynonymous SNV 0.894 1 22 hm5C_associated_SNPs_108241 0 0 1 0 1 METTL13 chr1:171761157 3'AG 171761157 Downstream 73bp
chr7 143018575 143018575 1 + C T SKCM 143018574 + 143018554 143018594 41 TCTTCTGCCACCTCATCTCTCCCCAGGCTGTTGGTGAGAAC TCTTCTGCCACCTCATCTCTCTCCAGGCTGTTGGTGAGAAC < 41bp 0.5490652176741 0.799826435811229 0.26732716 0.92709875 prediction 0.501522436274258 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143018574 chr7:143018575 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_108242 0 0 0 1 1 CLCN1 chr7:143018586 5'GT 143018586 Upstream 12bp
chr3 127396057 127396057 1 + C T SARC 127396056 + 127396036 127396076 41 GAAGGTGCTGACCATCGAGCCCCCACCTGCAGACCCCCGCC GAAGGTGCTGACCATCGAGCCTCCACCTGCAGACCCCCGCC < 41bp 0.535823144260355 0.786576351632654 0.096200675 0.9340291 prediction 0.501506414744597 Functional Gain - ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127396056 chr3:127396057 synonymous SNV . 0 22 hm5C_associated_SNPs_108243 0 0 1 0 2 ABTB1 chr3:127396011 3'AG 127396011 Downstream 47bp
chr3 127396057 127396057 1 + C T SARC 127396056 + 127396036 127396076 41 GAAGGTGCTGACCATCGAGCCCCCACCTGCAGACCCCCGCC GAAGGTGCTGACCATCGAGCCTCCACCTGCAGACCCCCGCC < 41bp 0.535823144260355 0.786576351632654 0.096200675 0.9340291 prediction 0.501506414744597 Functional Gain - ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127396056 chr3:127396057 synonymous SNV . 0 22 hm5C_associated_SNPs_108243 0 0 1 0 2 ABTB1 chr3:127396129 5'GT 127396129 Upstream 73bp
chr19 3730080 3730080 1 + C T SKCM 3730079 + 3730059 3730099 41 TTCCATGGAGAATGCCACCTCCGCGTTTGCCATTCAGATAC TTCCATGGAGAATGCCACCTCTGCGTTTGCCATTCAGATAC < 41bp 0.507967044875165 0.758719844666995 0.25237054 0.30826217 prediction 0.50150559958366 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3730079 chr19:3730080 synonymous SNV . 0 22 hm5C_associated_SNPs_108244 0 0 0 0 2 TJP3 chr19:3730026 3'AG 3730026 Downstream 55bp
chr19 3730080 3730080 1 + C T SKCM 3730079 + 3730059 3730099 41 TTCCATGGAGAATGCCACCTCCGCGTTTGCCATTCAGATAC TTCCATGGAGAATGCCACCTCTGCGTTTGCCATTCAGATAC < 41bp 0.507967044875165 0.758719844666995 0.25237054 0.30826217 prediction 0.50150559958366 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3730079 chr19:3730080 synonymous SNV . 0 22 hm5C_associated_SNPs_108244 0 0 0 0 2 TJP3 chr19:3730128 5'GT 3730128 Upstream 49bp
chr8 101237493 101237493 1 + C A STAD 101237489 + 101237469 101237509 41 TGCCTGCTTCTGTGCCACTGCAAGCTTGGCATCCGGCAAAA TGCCTGCTTCTGTGCCACTGCAAGATTGGCATCCGGCAAAA < 41bp 0.673912242275485 0.924654826044145 0.30016357 0.74941564 prediction 0.501485167537321 Functional Gain - SPAG1 ENSG00000104450 CDS Human protein_coding chr8:101237489 chr8:101237493 nonsynonymous SNV 0.010 0 25 hm5C_associated_SNPs_108247 0 0 0 0 2 SPAG1 chr8:101237401 3'AG 101237401 Downstream 93bp
chr8 101237493 101237493 1 + C A STAD 101237489 + 101237469 101237509 41 TGCCTGCTTCTGTGCCACTGCAAGCTTGGCATCCGGCAAAA TGCCTGCTTCTGTGCCACTGCAAGATTGGCATCCGGCAAAA < 41bp 0.673912242275485 0.924654826044145 0.30016357 0.74941564 prediction 0.501485167537321 Functional Gain - SPAG1 ENSG00000104450 CDS Human protein_coding chr8:101237489 chr8:101237493 nonsynonymous SNV 0.010 0 25 hm5C_associated_SNPs_108247 0 0 0 0 2 SPAG1 chr8:101237567 5'GT 101237567 Upstream 75bp
chr1 89835170 89835170 1 + C A LUAD 89835166 + 89835146 89835186 41 ATCTGGATGTGGTGCGTGCCCCACCCATCCAAGCCAAACCA ATCTGGATGTGGTGCGTGCCCCACACATCCAAGCCAAACCA < 41bp 0.331423422109028 0.750735742889506 0.028143585 0.035634786 prediction 0.501471485779011 Functional Gain - GBP6 ENSG00000183347 CDS Human protein_coding chr1:89835166 chr1:89835170 nonsynonymous SNV 0.148 2 25 hm5C_associated_SNPs_108251 0 0 0 0 2 GBP6 chr1:89835105 3'AG 89835105 Downstream 66bp
chr1 89835170 89835170 1 + C A LUAD 89835166 + 89835146 89835186 41 ATCTGGATGTGGTGCGTGCCCCACCCATCCAAGCCAAACCA ATCTGGATGTGGTGCGTGCCCCACACATCCAAGCCAAACCA < 41bp 0.331423422109028 0.750735742889506 0.028143585 0.035634786 prediction 0.501471485779011 Functional Gain - GBP6 ENSG00000183347 CDS Human protein_coding chr1:89835166 chr1:89835170 nonsynonymous SNV 0.148 2 25 hm5C_associated_SNPs_108251 0 0 0 0 2 GBP6 chr1:89835232 5'GT 89835232 Upstream 63bp
chr6 42992825 42992825 1 + C G rs3749903 42992821 + 42992801 42992841 41 CTGGAAATAGTCCTAAGAAACAAGCTTCTAGACCACCTATC CTGGAAATAGTCCTAAGAAACAAGGTTCTAGACCACCTATC < 41bp 0.563519678723414 0.814253365942422 0.3433732 0.8048114 prediction 0.501467374438015 Functional Gain - RRP36 ENSG00000124541 CDS Human protein_coding chr6:42992821 chr6:42992825 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_108253 0 0 1 0 1 RRP36 chr6:42992870 5'GT 42992870 Upstream 46bp
chr19 42085771 42085771 1 + C A OV 42085770 + 42085750 42085790 41 ACAGAGAAGGGCTCCGTGGTCCTGACCTGCCACACAAATAA ACAGAGAAGGGCTCCGTGGTCATGACCTGCCACACAAATAA < 41bp 0.498354297189224 0.750733107903531 0.0808776 0.13012743 prediction 0.501466215807061 Functional Gain - CEACAM21 ENSG00000007129 CDS Human protein_coding chr19:42085770 chr19:42085771 nonsynonymous SNV 0.009 3 22 hm5C_associated_SNPs_108254 0 0 0 0 1 CEACAM21 chr19:42085706 3'AG 42085706 Downstream 66bp
chr13 24234610 24234610 1 + T C UCEC 24234608 + 24234588 24234628 41 GAGCCTGCTGCCAGTGCCGCCGTGACTCAGTGCAGACCTGC GAGCCTGCTGCCAGTGCCGCCGCGACTCAGTGCAGACCTGC < 41bp 0.56055611484275 0.811288947630972 0.12116173 0.16790974 prediction 0.501465665576444 Functional Gain - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24234608 chr13:24234610 synonymous SNV . 0 23 hm5C_associated_SNPs_108255 0 0 1 0 1 TNFRSF19 chr13:24234629 5'GT 24234629 Upstream 20bp
chr22 21363642 21363642 1 - A C BRCA 21363645 - 21363625 21363665 41 TCTGCTCATGAAGCGGCTCTCGGTGGACTACGGGAAGAAGT TCTGCTCATGAAGCGGCTCTCGGGGGACTACGGGAAGAAGT < 41bp 0.653702587715819 0.904433691141501 0.90005195 0.9555489 prediction 0.501462206851363 Functional Gain - THAP7-AS1;TUBA3FP ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21363645 chr22:21363642 . . 0 24 hm5C_associated_SNPs_108256 0 0 1 0 1 THAP7-AS1;TUBA3FP chr22:21363738 3'AG 21363738 Downstream 97bp
chr1 32560458 32560458 1 + T C STAD 32560456 + 32560436 32560476 41 TCCATCAGCACCTCCGTGATCCTCATGCAGCACCTGCTGCC TCCATCAGCACCTCCGTGATCCCCATGCAGCACCTGCTGCC < 41bp 0.456663572781291 0.750725292563386 0.088831455 0.06978634 prediction 0.501450585126771 Functional Gain - TMEM39B ENSG00000121775 CDS Human protein_coding chr1:32560456 chr1:32560458 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_108257 0 0 0 2 1 TMEM39B chr1:32560385 3'AG 32560385 Downstream 74bp
chr19 5667104 5667104 1 + C T UCEC 5667103 + 5667083 5667123 41 AGAGCGCCACGGCCGGGACTCCCGCGATGGCTGGGGGGGCT AGAGCGCCACGGCCGGGACTCTCGCGATGGCTGGGGGGGCT < 41bp 0.514042179040019 0.764750030924899 0.39164534 0.18600073 prediction 0.501415703769759 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5667103 chr19:5667104 synonymous SNV . 0 22 hm5C_associated_SNPs_108259 0 0 1 0 2 SAFB chr19:5667057 3'AG 5667057 Downstream 48bp
chr19 5667104 5667104 1 + C T UCEC 5667103 + 5667083 5667123 41 AGAGCGCCACGGCCGGGACTCCCGCGATGGCTGGGGGGGCT AGAGCGCCACGGCCGGGACTCTCGCGATGGCTGGGGGGGCT < 41bp 0.514042179040019 0.764750030924899 0.39164534 0.18600073 prediction 0.501415703769759 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5667103 chr19:5667104 synonymous SNV . 0 22 hm5C_associated_SNPs_108259 0 0 1 0 2 SAFB chr19:5667175 5'GT 5667175 Upstream 72bp
chr15 42057138 42057138 1 + C T PAAD 42057137 + 42057117 42057157 41 CTGCCAACCTTGTGATGACTCCGCAAGGGCAATTGCTCACC CTGCCAACCTTGTGATGACTCTGCAAGGGCAATTGCTCACC < 41bp 0.510572590088764 0.761273360089752 0.043598235 0.34539264 prediction 0.501401540001976 Functional Gain - MGA ENSG00000174197 CDS Human protein_coding chr15:42057137 chr15:42057138 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_108261 0 0 1 0 1 MGA chr15:42057084 3'AG 42057084 Downstream 55bp
chr16 57714456 57714456 1 + C A BLCA 57714452 + 57714432 57714472 41 CAGTCCACGGTGCATATCCTCACACGCATCTCCCAGGCGGG CAGTCCACGGTGCATATCCTCACAAGCATCTCCCAGGCGGG < 41bp 0.332016509948576 0.750689723618398 0.092186034 0.08770692 prediction 0.501379447236796 Functional Gain - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714452 chr16:57714456 nonsynonymous SNV 0.724 0 25 hm5C_associated_SNPs_108263 0 0 0 0 2 ADGRG3 chr16:57714417 3'AG 57714417 Downstream 40bp
chr16 57714456 57714456 1 + C A BLCA 57714452 + 57714432 57714472 41 CAGTCCACGGTGCATATCCTCACACGCATCTCCCAGGCGGG CAGTCCACGGTGCATATCCTCACAAGCATCTCCCAGGCGGG < 41bp 0.332016509948576 0.750689723618398 0.092186034 0.08770692 prediction 0.501379447236796 Functional Gain - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714452 chr16:57714456 nonsynonymous SNV 0.724 0 25 hm5C_associated_SNPs_108263 0 0 0 0 2 ADGRG3 chr16:57714529 5'GT 57714529 Upstream 74bp
chr12 21370112 21370112 1 + C A COAD 21370108 + 21370088 21370128 41 TCTCCAGAACAGAAATTACTCAGCCCATTTGGGTGAATGCC TCTCCAGAACAGAAATTACTCAGCACATTTGGGTGAATGCC < 41bp 0.343688954370368 0.750680832943954 0.93566084 0.94089484 prediction 0.501361665887909 Functional Gain - SLCO1B1 ENSG00000134538 CDS Human protein_coding chr12:21370108 chr12:21370112 synonymous SNV . 0 25 hm5C_associated_SNPs_108264 0 0 0 0 1 SLCO1B1 chr12:21370053 3'AG 21370053 Downstream 60bp
chr7 74005258 74005258 1 + C T STAD 74005257 + 74005237 74005277 41 CTGCCTGATGACATCCCCTTCCGGAACCCCAACACGTACGA CTGCCTGATGACATCCCCTTCTGGAACCCCAACACGTACGA < 41bp 0.534577596006781 0.785257896106648 0.65733564 0.2544334 prediction 0.501360600199735 Functional Gain - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:74005257 chr7:74005258 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_108265 0 0 1 0 1 GTF2IRD1 chr7:74005346 5'GT 74005346 Upstream 89bp
chr5 167841564 167841564 1 + C A rs200207821 167841563 + 167841543 167841583 41 GAAAAGGACCTGCAGGCAGCCCGGGACACCCAGAGCAAGGC GAAAAGGACCTGCAGGCAGCCAGGGACACCCAGAGCAAGGC < 41bp 0.49218250295064 0.750676108588433 0.5937497 0.7954664 prediction 0.501352217176866 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167841563 chr5:167841564 synonymous SNV . 0 22 hm5C_associated_SNPs_108267 0 0 0 0 1 WWC1 chr5:167841595 5'GT 167841595 Upstream 32bp
chr12 100795591 100795591 1 + C A PRAD 100795587 + 100795567 100795607 41 GGGCAGTGGTTGCCATGCCCCTGGCTGGGGTGTTGGTGCAG GGGCAGTGGTTGCCATGCCCCTGGATGGGGTGTTGGTGCAG < 41bp 0.675117377913126 0.925786732953965 0.12653974 0.3001731 prediction 0.50133871008168 Functional Gain - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100795587 chr12:100795591 nonsynonymous SNV 0.579 4 25 hm5C_associated_SNPs_108270 0 0 0 0 2 SLC17A8 chr12:100795555 3'AG 100795555 Downstream 37bp
chr12 100795591 100795591 1 + C A PRAD 100795587 + 100795567 100795607 41 GGGCAGTGGTTGCCATGCCCCTGGCTGGGGTGTTGGTGCAG GGGCAGTGGTTGCCATGCCCCTGGATGGGGTGTTGGTGCAG < 41bp 0.675117377913126 0.925786732953965 0.12653974 0.3001731 prediction 0.50133871008168 Functional Gain - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100795587 chr12:100795591 nonsynonymous SNV 0.579 4 25 hm5C_associated_SNPs_108270 0 0 0 0 2 SLC17A8 chr12:100795641 5'GT 100795641 Upstream 51bp
chr11 65294436 65294436 1 + C T SKCM 65294435 + 65294415 65294455 41 CTGACCCCTCCCCTACAGATCCCCAAAACGCTGGTGCCCCA CTGACCCCTCCCCTACAGATCTCCAAAACGCTGGTGCCCCA < 41bp 0.477955315697273 0.750666326595121 0.078632295 0.95723236 prediction 0.501332653190241 Functional Gain - SCYL1 ENSG00000142186 CDS Human protein_coding chr11:65294435 chr11:65294436 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_108271 0 0 1 0 1 SCYL1 chr11:65294433 3'AG 65294433 Downstream 4bp
chr5 50683541 50683541 1 + C A rs200172777 50683540 + 50683520 50683560 41 GCCAGTCTAGGCGCTGGCGACCCGCTCAGTCCCCTGCATCC GCCAGTCTAGGCGCTGGCGACACGCTCAGTCCCCTGCATCC < 41bp 0.509431806847266 0.760088694202851 0.19848731 0.1410467 prediction 0.501313774711171 Functional Gain - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50683540 chr5:50683541 nonsynonymous SNV 0.984 2 22 hm5C_associated_SNPs_108273 0 0 0 0 1 ISL1 chr5:50683583 5'GT 50683583 Upstream 43bp
chr17 18144126 18144126 1 + C A rs575121495 18144122 + 18144102 18144142 41 CCTACGAGGCCTCACGGGACCTGGCGCAGGCACCTGACATG CCTACGAGGCCTCACGGGACCTGGAGCAGGCACCTGACATG < 41bp 0.674307321916239 0.924958516164912 0.27507162 0.8192793 prediction 0.501302388497347 Functional Gain - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18144122 chr17:18144126 nonsynonymous SNV 0.917 3 25 hm5C_associated_SNPs_108274 0 0 1 0 1 LLGL1 chr17:18144187 5'GT 18144187 Upstream 62bp
chr11 86123497 86123497 1 + C T SKCM 86123496 + 86123476 86123516 41 TCTTAAGCAAGAGGAATATTCCCGGAGTCTCCTGAAACAAA TCTTAAGCAAGAGGAATATTCTCGGAGTCTCCTGAAACAAA < 41bp 0.511279699446096 0.761919219198798 0.68583226 0.4482981 prediction 0.501279039505403 Functional Gain - CCDC81 ENSG00000149201 CDS Human protein_coding chr11:86123496 chr11:86123497 synonymous SNV . 0 22 hm5C_associated_SNPs_108281 0 0 1 0 1 CCDC81 chr11:86123429 3'AG 86123429 Downstream 69bp
chr16 71417284 71417284 1 + C A LUAD 71417280 + 71417260 71417300 41 TGTGTTGCAGGGATTCCTGTCAGACCTGCTGAAGAAGGCGA TGTGTTGCAGGGATTCCTGTCAGAACTGCTGAAGAAGGCGA < 41bp 0.338304870177855 0.750639137896141 0.4483738 0.43186995 prediction 0.501278275792283 Functional Gain - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71417280 chr16:71417284 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_108282 0 0 0 1 2 CALB2 chr16:71417270 3'AG 71417270 Downstream 15bp
chr16 71417284 71417284 1 + C A LUAD 71417280 + 71417260 71417300 41 TGTGTTGCAGGGATTCCTGTCAGACCTGCTGAAGAAGGCGA TGTGTTGCAGGGATTCCTGTCAGAACTGCTGAAGAAGGCGA < 41bp 0.338304870177855 0.750639137896141 0.4483738 0.43186995 prediction 0.501278275792283 Functional Gain - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71417280 chr16:71417284 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_108282 0 0 0 1 2 CALB2 chr16:71417347 5'GT 71417347 Upstream 64bp
chr12 108959146 108959146 1 + T G UCEC 108959143 + 108959123 108959163 41 TGTGGATGCTAGGTTTAAAACATTTGGCTGTGGTTCCGCAA TGTGGATGCTAGGTTTAAAACATGTGGCTGTGGTTCCGCAA < 41bp 0.360213191382944 0.750634617007116 0.20707363 0.2704798 prediction 0.501269234014233 Functional Gain - ISCU ENSG00000136003 CDS Human protein_coding chr12:108959143 chr12:108959146 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_108283 0 0 1 0 2 ISCU chr12:108959097 3'AG 108959097 Downstream 50bp
chr12 108959146 108959146 1 + T G UCEC 108959143 + 108959123 108959163 41 TGTGGATGCTAGGTTTAAAACATTTGGCTGTGGTTCCGCAA TGTGGATGCTAGGTTTAAAACATGTGGCTGTGGTTCCGCAA < 41bp 0.360213191382944 0.750634617007116 0.20707363 0.2704798 prediction 0.501269234014233 Functional Gain - ISCU ENSG00000136003 CDS Human protein_coding chr12:108959143 chr12:108959146 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_108283 0 0 1 0 2 ISCU chr12:108959207 5'GT 108959207 Upstream 62bp
chr1 9661186 9661186 1 + C T SKCM 9661185 + 9661165 9661205 41 CTTCTCCTCCGCCGTGAAGTCCCCGGTCCAGGTCATCCTGC CTTCTCCTCCGCCGTGAAGTCTCCGGTCCAGGTCATCCTGC < 41bp 0.526769404054529 0.777400718288851 0.28003493 0.75739837 prediction 0.501262628468646 Functional Gain - TMEM201 ENSG00000188807 CDS Human protein_coding chr1:9661185 chr1:9661186 synonymous SNV . 0 22 hm5C_associated_SNPs_108286 0 0 0 0 1 TMEM201 chr1:9661163 3'AG 9661163 Downstream 24bp
chr7 43846646 43846646 1 + T A UCEC 43846642 + 43846622 43846662 41 AGATATTTAAGCTTCCATTTCAAGTCTGGGTCCTTGGAGAA AGATATTTAAGCTTCCATTTCAAGACTGGGTCCTTGGAGAA < 41bp 0.419700404321534 0.750616790164966 0.15197277 0.24026942 prediction 0.501233580329932 Functional Gain - BLVRA ENSG00000106605 CDS Human protein_coding chr7:43846642 chr7:43846646 nonsynonymous SNV 0.993 1 25 hm5C_associated_SNPs_108288 0 0 1 0 1 BLVRA chr7:43846576 3'AG 43846576 Downstream 71bp
chr11 64026685 64026685 1 + C G rs28395882 64026684 + 64026664 64026704 41 TTCTGCCCTGAGCGAGAGCTCCGCGGCCACCGAGCCCTCCT TTCTGCCCTGAGCGAGAGCTCGGCGGCCACCGAGCCCTCCT < 41bp 0.447032007894929 0.750589960325265 0.83792675 0.91633546 prediction 0.501179920650531 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64026684 chr11:64026685 synonymous SNV . 0 22 hm5C_associated_SNPs_108291 0 0 1 0 1 PLCB3 chr11:64026716 5'GT 64026716 Upstream 32bp
chr4 109571901 109571901 1 + C A GBM 109571897 + 109571877 109571917 41 GCCCTGGTTGCACATGCCGTCGGCCATGACTGTGTATGCTC GCCCTGGTTGCACATGCCGTCGGCAATGACTGTGTATGCTC < 41bp 0.66662447295349 0.917192493580996 0.092998475 0.1486207 prediction 0.501136041255012 Functional Gain - OSTC ENSG00000198856 CDS Human protein_coding chr4:109571897 chr4:109571901 synonymous SNV . 0 25 hm5C_associated_SNPs_108293 0 0 1 0 1 OSTC chr4:109571950 5'GT 109571950 Upstream 50bp
chr11 128786320 128786320 1 + C A LUAD 128786319 + 128786299 128786339 41 CCCAGGCATGACCTGCCAAGCCCGGAGCTCCTACATGGATA CCCAGGCATGACCTGCCAAGCACGGAGCTCCTACATGGATA < 41bp 0.5200858026283 0.770632129227494 0.026196033 0.06880671 prediction 0.501092653198387 Functional Gain - KCNJ5 ENSG00000120457 CDS Human protein_coding chr11:128786319 chr11:128786320 synonymous SNV . 0 22 hm5C_associated_SNPs_108297 0 0 0 0 1 KCNJ5 chr11:128786304 3'AG 128786304 Downstream 17bp
chr4 660381 660381 1 + T C COAD 660379 + 660359 660399 41 CTGCAAGTGGGCTTCATCGACTTCGTGTGCACATTCGTGTA CTGCAAGTGGGCTTCATCGACTCCGTGTGCACATTCGTGTA < 41bp 0.468429164384358 0.750538133333246 0.09637323 0.18811339 prediction 0.501076266666492 Functional Gain - PDE6B ENSG00000133256 CDS Human protein_coding chr4:660379 chr4:660381 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_108300 0 0 0 0 1 PDE6B chr4:660320 3'AG 660320 Downstream 62bp
chr12 6940469 6940469 1 + T G rs202164451 6940466 + 6940446 6940486 41 CTGCCAAGAGGGCTCTGAACCAGTACCAGGCCCAGCTGGGA CTGCCAAGAGGGCTCTGAACCAGGACCAGGCCCAGCTGGGA < 41bp 0.669590781438331 0.92011698732574 0.22805518 0.7321856 prediction 0.501052411774818 Functional Gain - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6940466 chr12:6940469 nonsynonymous SNV 0.980 2 24 hm5C_associated_SNPs_108301 0 0 1 0 2 P3H3 chr12:6940380 3'AG 6940380 Downstream 90bp
chr12 6940469 6940469 1 + T G rs202164451 6940466 + 6940446 6940486 41 CTGCCAAGAGGGCTCTGAACCAGTACCAGGCCCAGCTGGGA CTGCCAAGAGGGCTCTGAACCAGGACCAGGCCCAGCTGGGA < 41bp 0.669590781438331 0.92011698732574 0.22805518 0.7321856 prediction 0.501052411774818 Functional Gain - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6940466 chr12:6940469 nonsynonymous SNV 0.980 2 24 hm5C_associated_SNPs_108301 0 0 1 0 2 P3H3 chr12:6940516 5'GT 6940516 Upstream 48bp
chr7 66147178 66147178 1 + C G rs3800820 66147174 + 66147154 66147194 41 GACCTGCCGAGCGACGTGGGCGAGCGGTGACCTGGACCACG GACCTGCCGAGCGACGTGGGCGAGGGGTGACCTGGACCACG < 41bp 0.479628372508297 0.75052072036186 0.87961376 0.9052716 prediction 0.50104144072372 Functional Gain - RABGEF1 ENSG00000154710 UTR5 Human protein_coding chr7:66147174 chr7:66147178 . . 0 25 hm5C_associated_SNPs_108303 0 0 1 0 1 RABGEF1 chr7:66147245 5'GT 66147245 Upstream 68bp
chr11 63987053 63987053 1 + C T GBM 63987052 + 63987032 63987072 41 GGGGAGCCGGCTGGCACAGACCCAGGGCTGGACGACCTGGA GGGGAGCCGGCTGGCACAGACTCAGGGCTGGACGACCTGGA < 41bp 0.508800263024431 0.759320869153469 0.77815986 0.12858066 prediction 0.501041212258076 Functional Gain - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63987052 chr11:63987053 nonsynonymous SNV 0.571 0 22 hm5C_associated_SNPs_108304 0 0 1 0 2 FERMT3 chr11:63986996 3'AG 63986996 Downstream 58bp
chr11 63987053 63987053 1 + C T GBM 63987052 + 63987032 63987072 41 GGGGAGCCGGCTGGCACAGACCCAGGGCTGGACGACCTGGA GGGGAGCCGGCTGGCACAGACTCAGGGCTGGACGACCTGGA < 41bp 0.508800263024431 0.759320869153469 0.77815986 0.12858066 prediction 0.501041212258076 Functional Gain - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63987052 chr11:63987053 nonsynonymous SNV 0.571 0 22 hm5C_associated_SNPs_108304 0 0 1 0 2 FERMT3 chr11:63987130 5'GT 63987130 Upstream 78bp
chr1 151372164 151372164 1 + C A OV 151372163 + 151372143 151372183 41 CTCCCGATTCCTTCATGGATCCGGCGTCTGCACTTTACAGA CTCCCGATTCCTTCATGGATCAGGCGTCTGCACTTTACAGA < 41bp 0.513250060926439 0.763766640278856 0.516337 0.8270153 prediction 0.501033158704835 Functional Gain - PSMB4 ENSG00000159377 CDS Human protein_coding chr1:151372163 chr1:151372164 nonsynonymous SNV 0.010 1 22 hm5C_associated_SNPs_108305 0 0 1 0 1 PSMB4 chr1:151372203 5'GT 151372203 Upstream 40bp
chr19 10157219 10157219 1 + T G rs11883054 10157216 + 10157196 10157236 41 CTCGAGAGGATCAATTGCATCTGTGGACAAGTGAGGGGGCT CTCGAGAGGATCAATTGCATCTGGGGACAAGTGAGGGGGCT < 41bp 0.395972640770676 0.750514596994867 0.33241445 0.5995139 prediction 0.501029193989733 Functional Gain - C3P1 ENSG00000167798 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:10157216 chr19:10157219 . . 0 24 hm5C_associated_SNPs_108306 0 0 0 0 1 C3P1 chr19:10157225 5'GT 10157225 Upstream 7bp
chr3 38045751 38045751 1 + C A COAD 38045750 + 38045730 38045770 41 TGTCCGTGCTGGCCAGGCTCCCTGAGGAGGTCCCCAGCTTC TGTCCGTGCTGGCCAGGCTCCATGAGGAGGTCCCCAGCTTC < 41bp 0.492647309973534 0.750492199046991 0.27889013 0.27511153 prediction 0.500984398093983 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38045750 chr3:38045751 nonsynonymous SNV 0.698 1 22 hm5C_associated_SNPs_108310 0 0 1 0 1 VILL chr3:38045746 3'AG 38045746 Downstream 6bp
chr12 132426506 132426506 1 + C A rs149378338 132426502 + 132426482 132426522 41 ACAACTTCAGTGCCACCGCTCTCACGGCAGGTGGCACGGGC ACAACTTCAGTGCCACCGCTCTCAAGGCAGGTGGCACGGGC < 41bp 0.339454535504362 0.750486267977292 0.07478607 0.24136937 prediction 0.500972535954583 Functional Gain - PUS1 ENSG00000177192 CDS Human protein_coding chr12:132426502 chr12:132426506 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_108313 0 0 1 0 1 PUS1 chr12:132426528 5'GT 132426528 Upstream 23bp
chr22 32253488 32253488 1 + C A rs373166302 32253484 + 32253464 32253504 41 TGGGAAGAGCTCCGCCCAGTCAGCCGAGAGCAGCAGCGTTG TGGGAAGAGCTCCGCCCAGTCAGCAGAGAGCAGCAGCGTTG < 41bp 0.658477801554956 0.908950324452403 0.3539346 0.6509292 prediction 0.500945045794894 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32253484 chr22:32253488 synonymous SNV . 0 25 hm5C_associated_SNPs_108316 0 0 1 0 2 DEPDC5 chr22:32253431 3'AG 32253431 Downstream 58bp
chr22 32253488 32253488 1 + C A rs373166302 32253484 + 32253464 32253504 41 TGGGAAGAGCTCCGCCCAGTCAGCCGAGAGCAGCAGCGTTG TGGGAAGAGCTCCGCCCAGTCAGCAGAGAGCAGCAGCGTTG < 41bp 0.658477801554956 0.908950324452403 0.3539346 0.6509292 prediction 0.500945045794894 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32253484 chr22:32253488 synonymous SNV . 0 25 hm5C_associated_SNPs_108316 0 0 1 0 2 DEPDC5 chr22:32253539 5'GT 32253539 Upstream 52bp
chr20 31601738 31601738 1 + C A LUAD 31601734 + 31601714 31601754 41 CCTGCTCTTTATTCTCGGGCCACGCCAACGAGTTTGATGGC CCTGCTCTTTATTCTCGGGCCACGACAACGAGTTTGATGGC < 41bp 0.331267977157931 0.750471508930071 0.0699524 0.072969556 prediction 0.500943017860142 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31601734 chr20:31601738 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_108317 0 0 0 0 1 BPIFB2 chr20:31601762 5'GT 31601762 Upstream 25bp
chrX 55757849 55757849 1 + C T UCEC 55757848 + 55757828 55757868 41 AGCCAACGGGACAACATCTTCCGAAATGTGGAGGTTCTGAT AGCCAACGGGACAACATCTTCTGAAATGTGGAGGTTCTGAT < 41bp 0.495663146399609 0.75046303649564 0.17189878 0.12638238 prediction 0.50092607299128 Functional Gain - RRAGB ENSG00000083750 CDS Human protein_coding chrX:55757848 chrX:55757849 stopgain 0.998 1 22 hm5C_associated_SNPs_108318 0 0 1 0 1 RRAGB chrX:55757797 3'AG 55757797 Downstream 53bp
chr12 121132914 121132914 1 + C T SKCM 121132913 + 121132893 121132933 41 CCTAGGGGTACTATGACAATCCCAAGGTCTGTGCACTCTAC CCTAGGGGTACTATGACAATCTCAAGGTCTGTGCACTCTAC < 41bp 0.541853233496237 0.792309183315201 0.13870427 0.10757667 prediction 0.500911899637928 Functional Gain - MLEC ENSG00000110917 CDS Human protein_coding chr12:121132913 chr12:121132914 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_108319 0 0 1 0 2 MLEC chr12:121132898 3'AG 121132898 Downstream 17bp
chr12 121132914 121132914 1 + C T SKCM 121132913 + 121132893 121132933 41 CCTAGGGGTACTATGACAATCCCAAGGTCTGTGCACTCTAC CCTAGGGGTACTATGACAATCTCAAGGTCTGTGCACTCTAC < 41bp 0.541853233496237 0.792309183315201 0.13870427 0.10757667 prediction 0.500911899637928 Functional Gain - MLEC ENSG00000110917 CDS Human protein_coding chr12:121132913 chr12:121132914 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_108319 0 0 1 0 2 MLEC chr12:121132955 5'GT 121132955 Upstream 42bp
chr21 43979120 43979120 1 + C A THCA 43979119 + 43979099 43979139 41 ATGGGAAGGGCTCCATCCACCCGAACCACGTCGTCATTCTC ATGGGAAGGGCTCCATCCACCAGAACCACGTCGTCATTCTC < 41bp 0.487297862219519 0.750454995025508 0.39813617 0.6347039 prediction 0.500909990051015 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43979119 chr21:43979120 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_108320 0 0 0 0 2 SLC37A1 chr21:43979068 3'AG 43979068 Downstream 53bp
chr21 43979120 43979120 1 + C A THCA 43979119 + 43979099 43979139 41 ATGGGAAGGGCTCCATCCACCCGAACCACGTCGTCATTCTC ATGGGAAGGGCTCCATCCACCAGAACCACGTCGTCATTCTC < 41bp 0.487297862219519 0.750454995025508 0.39813617 0.6347039 prediction 0.500909990051015 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43979119 chr21:43979120 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_108320 0 0 0 0 2 SLC37A1 chr21:43979199 5'GT 43979199 Upstream 80bp
chr7 100198206 100198206 1 + T C SKCM 100198204 + 100198184 100198224 41 GCCACCAGGGAGTGCCTATACATCCTGTCCAGCCACGACAT GCCACCAGGGAGTGCCTATACACCCTGTCCAGCCACGACAT < 41bp 0.527370363390411 0.77781895123712 0.01060909 0.017620891 prediction 0.500897175693418 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100198204 chr7:100198206 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_108322 0 0 0 0 1 FBXO24 chr7:100198157 3'AG 100198157 Downstream 50bp
chr19 3282363 3282363 1 + C T rs570394805 3282362 + 3282342 3282382 41 CTCTGCAGGGCTGCACTCACCCCCGCTGCTGGGCACCACCG CTCTGCAGGGCTGCACTCACCTCCGCTGCTGGGCACCACCG < 41bp 0.526553642735891 0.776998095530564 0.26153994 0.6386125 prediction 0.500888905589345 Functional Gain - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3282362 chr19:3282363 synonymous SNV . 0 22 hm5C_associated_SNPs_108323 0 0 0 0 1 CELF5 chr19:3282350 3'AG 3282350 Downstream 14bp
chr11 64940204 64940204 1 + C T SKCM 64940203 + 64940183 64940223 41 CTTGGACTCGGGACCGGCGCCCCCACCATGGTGGGGTTCAG CTTGGACTCGGGACCGGCGCCTCCACCATGGTGGGGTTCAG < 41bp 0.518537838266727 0.768979491179818 0.315574 0.9267672 prediction 0.500883305826183 Functional Gain - SPDYC ENSG00000204710 CDS Human protein_coding chr11:64940203 chr11:64940204 nonsynonymous SNV 0.152 0 22 hm5C_associated_SNPs_108324 0 0 0 0 1 SPDYC chr11:64940155 3'AG 64940155 Downstream 50bp
chr1 112020367 112020367 1 + C G THCA 112020366 + 112020346 112020386 41 AGATCACTCCAAGCCCCAGGCCCCAGATCCTCACTCAGATC AGATCACTCCAAGCCCCAGGCGCCAGATCCTCACTCAGATC < 41bp 0.602223631358821 0.852661802041785 0.3260728 0.2904247 prediction 0.500876341365928 Functional Gain - C1orf162 ENSG00000143110 CDS Human protein_coding chr1:112020366 chr1:112020367 synonymous SNV . 0 22 hm5C_associated_SNPs_108325 0 0 0 0 2 C1orf162 chr1:112020273 3'AG 112020273 Downstream 95bp
chr1 112020367 112020367 1 + C G THCA 112020366 + 112020346 112020386 41 AGATCACTCCAAGCCCCAGGCCCCAGATCCTCACTCAGATC AGATCACTCCAAGCCCCAGGCGCCAGATCCTCACTCAGATC < 41bp 0.602223631358821 0.852661802041785 0.3260728 0.2904247 prediction 0.500876341365928 Functional Gain - C1orf162 ENSG00000143110 CDS Human protein_coding chr1:112020366 chr1:112020367 synonymous SNV . 0 22 hm5C_associated_SNPs_108325 0 0 0 0 2 C1orf162 chr1:112020397 5'GT 112020397 Upstream 31bp
chr19 45971880 45971880 1 + C A TGCT 45971876 + 45971856 45971896 41 TTTCCCCGGAGACTACGACTCCGGCTCCCGGTGCAGCTCCT TTTCCCCGGAGACTACGACTCCGGATCCCGGTGCAGCTCCT < 41bp 0.366706109292094 0.750431942132943 0.47373995 0.59247077 prediction 0.500863884265886 Functional Gain - FOSB ENSG00000125740 CDS Human protein_coding chr19:45971876 chr19:45971880 synonymous SNV . 0 25 hm5C_associated_SNPs_108326 0 0 1 0 1 FOSB chr19:45971970 5'GT 45971970 Upstream 91bp
chr13 37007278 37007278 1 + C A COAD 37007277 + 37007257 37007297 41 TGTCAGATACTCACCAGAGCCCCGCTGGGCCAGGATCCCCC TGTCAGATACTCACCAGAGCCACGCTGGGCCAGGATCCCCC < 41bp 0.501009001346552 0.751433966698607 0.027298987 0.020432293 prediction 0.500849930704111 Functional Gain - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37007277 chr13:37007278 nonsynonymous SNV 0.524 0 22 hm5C_associated_SNPs_108327 0 0 0 0 1 CCNA1 chr13:37007358 5'GT 37007358 Upstream 81bp
chr12 57853954 57853954 1 + C G rs377330434 57853953 + 57853933 57853973 41 GCCCAGACTCCAGCCCTGGACCGCGCATCCCGAGCCCAGCG GCCCAGACTCCAGCCCTGGACGGCGCATCCCGAGCCCAGCG < 41bp 0.576027028563137 0.826450910756484 0.12608153 0.32751003 prediction 0.500847764386692 Functional Gain - GLI1 ENSG00000111087 UTR5 Human protein_coding chr12:57853953 chr12:57853954 . . 0 22 hm5C_associated_SNPs_108329 0 0 0 0 1 GLI1 chr12:57853984 5'GT 57853984 Upstream 31bp
chr9 96407983 96407983 1 + C G rs9695734 96407982 + 96407962 96408002 41 CATGGAGGAGCACGGCTTCACCGAGCCCATCCTCGTCCCTA CATGGAGGAGCACGGCTTCACGGAGCCCATCCTCGTCCCTA < 41bp 0.611846860306273 0.862251935773002 0.43206388 0.8957615 prediction 0.500810150933458 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96407982 chr9:96407983 synonymous SNV . 0 22 hm5C_associated_SNPs_108332 0 0 1 0 2 PHF2 chr9:96407911 3'AG 96407911 Downstream 73bp
chr9 96407983 96407983 1 + C G rs9695734 96407982 + 96407962 96408002 41 CATGGAGGAGCACGGCTTCACCGAGCCCATCCTCGTCCCTA CATGGAGGAGCACGGCTTCACGGAGCCCATCCTCGTCCCTA < 41bp 0.611846860306273 0.862251935773002 0.43206388 0.8957615 prediction 0.500810150933458 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96407982 chr9:96407983 synonymous SNV . 0 22 hm5C_associated_SNPs_108332 0 0 1 0 2 PHF2 chr9:96408071 5'GT 96408071 Upstream 89bp
chr11 60201389 60201389 1 + T C UCEC 60201387 + 60201367 60201407 41 AAGGCTGTTACTGTCCTGTTCTTGGTAAGTATGTTGCATTT AAGGCTGTTACTGTCCTGTTCTCGGTAAGTATGTTGCATTT < 41bp 0.498804653729405 0.750404005875406 0.2515241 0.3370214 prediction 0.500808011750812 Functional Gain - MS4A5 ENSG00000166930 CDS Human protein_coding chr11:60201387 chr11:60201389 nonsynonymous SNV 0.557 1 23 hm5C_associated_SNPs_108333 0 0 0 0 1 MS4A5 chr11:60201390 5'GT 60201390 Upstream 2bp
chr1 43638051 43638051 1 + C G UCEC 43638050 + 43638030 43638070 41 GCTACGGCGTTTGAAAGTGTCCGGGTTGCTTAGGATCCCTA GCTACGGCGTTTGAAAGTGTCGGGGTTGCTTAGGATCCCTA < 41bp 0.579462068815946 0.82986290560827 0.905756 0.9449575 prediction 0.500801673584649 Functional Gain - EBNA1BP2 ENSG00000117395 CDS Human other chr1:43638050 chr1:43638051 synonymous SNV . 0 22 hm5C_associated_SNPs_108334 0 0 0 0 1 CFAP57;EBNA1BP2 chr1:43638124 5'GT 43638124 Upstream 74bp
chrX 48341100 48341100 1 + C A LUAD 48341099 + 48341079 48341119 41 AGCTGGCCAAGGAGATCCGCCCCCAGGACTGCCCCATCAGC AGCTGGCCAAGGAGATCCGCCACCAGGACTGCCCCATCAGC < 41bp 0.523170171008972 0.773532309540305 0.08423495 0.11601052 prediction 0.500724277062666 Functional Gain - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48341099 chrX:48341100 nonsynonymous SNV 0.993 1 22 hm5C_associated_SNPs_108339 0 0 1 0 1 FTSJ1 chrX:48341182 5'GT 48341182 Upstream 83bp
chr12 100612246 100612246 1 + T C UCEC 100612244 + 100612224 100612264 41 ACAAATCTGGGGAACAAATTCTTCGTTTGGCCAATGAGAGA ACAAATCTGGGGAACAAATTCTCCGTTTGGCCAATGAGAGA < 41bp 0.458566836456501 0.750359741948881 0.08271429 0.06616861 prediction 0.500719483897762 Functional Gain - ACTR6 ENSG00000075089 CDS Human protein_coding chr12:100612244 chr12:100612246 synonymous SNV . 0 23 hm5C_associated_SNPs_108340 0 0 1 0 1 ACTR6 chr12:100612193 3'AG 100612193 Downstream 54bp
chr11 63965419 63965419 1 + C A rs375422757 63965418 + 63965398 63965438 41 GTCTCTGGCAGAGCACCGAACCCCAGATGTGCTCAAGAAAT GTCTCTGGCAGAGCACCGAACACCAGATGTGCTCAAGAAAT < 41bp 0.510315822923833 0.760671075372178 0.31852567 0.19220975 prediction 0.500710504896689 Functional Gain - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63965418 chr11:63965419 synonymous SNV . 0 22 hm5C_associated_SNPs_108341 0 0 1 0 2 STIP1 chr11:63965326 3'AG 63965326 Downstream 94bp
chr11 63965419 63965419 1 + C A rs375422757 63965418 + 63965398 63965438 41 GTCTCTGGCAGAGCACCGAACCCCAGATGTGCTCAAGAAAT GTCTCTGGCAGAGCACCGAACACCAGATGTGCTCAAGAAAT < 41bp 0.510315822923833 0.760671075372178 0.31852567 0.19220975 prediction 0.500710504896689 Functional Gain - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63965418 chr11:63965419 synonymous SNV . 0 22 hm5C_associated_SNPs_108341 0 0 1 0 2 STIP1 chr11:63965446 5'GT 63965446 Upstream 28bp
chr1 226413217 226413217 1 + C A LUAD 226413216 + 226413196 226413236 41 CCCCTCTTCCAGGTATGGTTCCAGAACAGGCGTGCCAAGTC CCCCTCTTCCAGGTATGGTTCAAGAACAGGCGTGCCAAGTC < 41bp 0.509301294151717 0.759642483396595 0.2787271 0.21164224 prediction 0.500682378489757 Functional Gain - MIXL1 ENSG00000185155 CDS Human protein_coding chr1:226413216 chr1:226413217 nonsynonymous SNV 0.004 4 22 hm5C_associated_SNPs_108342 0 0 0 0 1 MIXL1 chr1:226413208 3'AG 226413208 Downstream 10bp
chr10 43600465 43600465 1 + C T STAD 43600464 + 43600444 43600484 41 AGCACGCGCTGGGCCCTGGACCGCGAGCAGCGGGAGAAGTA AGCACGCGCTGGGCCCTGGACTGCGAGCAGCGGGAGAAGTA < 41bp 0.502102347333552 0.752443350011706 0.17285207 0.13398072 prediction 0.500682005356308 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43600464 chr10:43600465 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_108343 0 0 0 0 1 RET chr10:43600400 3'AG 43600400 Downstream 66bp
chr1 11576215 11576215 1 + C A LUSC 11576214 + 11576194 11576234 41 CTACGCAGCTAACGTCTTCTCCCAGGTGCGGACCTGTCCTC CTACGCAGCTAACGTCTTCTCACAGGTGCGGACCTGTCCTC < 41bp 0.541871299496657 0.792202766383101 0.7274668 0.94055474 prediction 0.500662933772888 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11576214 chr1:11576215 synonymous SNV . 0 22 hm5C_associated_SNPs_108345 0 0 0 0 1 DISP3 chr1:11576218 5'GT 11576218 Upstream 4bp
chr11 63993764 63993764 1 + C A rs367699671 63993760 + 63993740 63993780 41 AGGGGCGGAGCCTGAGGGACCCGGCGGCTGGTGAGCGCCCG AGGGGCGGAGCCTGAGGGACCCGGAGGCTGGTGAGCGCCCG < 41bp 0.628061453957299 0.87838488449603 0.9094341 0.91512847 prediction 0.500646861077462 Functional Gain - NUDT22 ENSG00000149761 UTR5 Human protein_coding chr11:63993760 chr11:63993764 . . 0 25 hm5C_associated_SNPs_108348 0 0 0 0 1 NUDT22 chr11:63993769 5'GT 63993769 Upstream 6bp
chr12 9002848 9002848 1 + C A COAD 9002844 + 9002824 9002864 41 CGCCAGTACTTCCCAGAGACCTGGCTCTGGGATCTGTTTCC CGCCAGTACTTCCCAGAGACCTGGATCTGGGATCTGTTTCC < 41bp 0.333419350394815 0.750322602188395 0.11628419 0.28412008 prediction 0.50064520437679 Functional Gain - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9002844 chr12:9002848 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_108349 0 0 0 0 2 A2ML1 chr12:9002756 3'AG 9002756 Downstream 93bp
chr12 9002848 9002848 1 + C A COAD 9002844 + 9002824 9002864 41 CGCCAGTACTTCCCAGAGACCTGGCTCTGGGATCTGTTTCC CGCCAGTACTTCCCAGAGACCTGGATCTGGGATCTGTTTCC < 41bp 0.333419350394815 0.750322602188395 0.11628419 0.28412008 prediction 0.50064520437679 Functional Gain - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9002844 chr12:9002848 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_108349 0 0 0 0 2 A2ML1 chr12:9002870 5'GT 9002870 Upstream 23bp
chr2 234873391 234873391 1 + C A STAD 234873390 + 234873370 234873410 41 GCTGGCTAATGAGTACGAGACCCGGGCTGTTGGTGAGTCCA GCTGGCTAATGAGTACGAGACACGGGCTGTTGGTGAGTCCA < 41bp 0.491885663302261 0.750315746252478 0.3534486 0.3090882 prediction 0.500631492504956 Functional Gain - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234873390 chr2:234873391 synonymous SNV . 0 22 hm5C_associated_SNPs_108351 0 0 0 0 1 TRPM8 chr2:234873401 5'GT 234873401 Upstream 11bp
chr16 57764957 57764957 1 + C T rs149394680 57764956 + 57764936 57764976 41 TCTCAGGCCATGTTCCGCATCCGCATCCTGGAGCAGCGCCT TCTCAGGCCATGTTCCGCATCTGCATCCTGGAGCAGCGCCT < 41bp 0.513343382248478 0.763648932885277 0.17773604 0.3315171 prediction 0.500611101273599 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57764956 chr16:57764957 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_108354 0 0 0 0 1 DRC7 chr16:57764982 5'GT 57764982 Upstream 26bp
chr1 92415219 92415219 1 + C G rs143341279 92415218 + 92415198 92415238 41 GGGCAGTTGAGAAGGCCACCCCGCTTCGTGCCTGCAGCCCA GGGCAGTTGAGAAGGCCACCCGGCTTCGTGCCTGCAGCCCA < 41bp 0.483315705936741 0.750270313719245 0.07225558 0.23305875 prediction 0.50054062743849 Functional Gain - BRDT ENSG00000137948 UTR5 Human protein_coding chr1:92415218 chr1:92415219 . . 0 22 hm5C_associated_SNPs_108357 0 0 0 0 1 BRDT chr1:92415239 5'GT 92415239 Upstream 21bp
chr6 96969791 96969791 1 + C A HNSC 96969787 + 96969767 96969807 41 AGAGATTAGGCGGTTGGCGGCCGACTTCCAGCGGGCGCAGT AGAGATTAGGCGGTTGGCGGCCGAATTCCAGCGGGCGCAGT < 41bp 0.389772768077627 0.750268176012716 0.8323177 0.6429323 prediction 0.500536352025432 Functional Gain - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96969787 chr6:96969791 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_108359 0 0 1 0 1 UFL1 chr6:96969826 5'GT 96969826 Upstream 36bp
chr4 71464112 71464112 1 + C A UCEC 71464108 + 71464088 71464128 41 GGAAGTCTGCAGAGATTAAACACACTTTCTCAGGTAATCAT GGAAGTCTGCAGAGATTAAACACAATTTCTCAGGTAATCAT < 41bp 0.346733003426089 0.750264512633457 0.22916374 0.16497889 prediction 0.500529025266913 Functional Gain - AMBN ENSG00000178522 CDS Human protein_coding chr4:71464108 chr4:71464112 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_108360 0 0 0 0 2 AMBN chr4:71464073 3'AG 71464073 Downstream 40bp
chr4 71464112 71464112 1 + C A UCEC 71464108 + 71464088 71464128 41 GGAAGTCTGCAGAGATTAAACACACTTTCTCAGGTAATCAT GGAAGTCTGCAGAGATTAAACACAATTTCTCAGGTAATCAT < 41bp 0.346733003426089 0.750264512633457 0.22916374 0.16497889 prediction 0.500529025266913 Functional Gain - AMBN ENSG00000178522 CDS Human protein_coding chr4:71464108 chr4:71464112 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_108360 0 0 0 0 2 AMBN chr4:71464120 5'GT 71464120 Upstream 9bp
chr2 79350029 79350029 1 + C A LUAD 79350028 + 79350008 79350048 41 CAAGTCCTGGGGCATTGGAGCCCCAAGCAGTGTTAATCCTG CAAGTCCTGGGGCATTGGAGCACCAAGCAGTGTTAATCCTG < 41bp 0.513346526650377 0.763585406318181 0.7031073 0.46114033 prediction 0.500477759335608 Functional Gain - REG1A ENSG00000115386 CDS Human protein_coding chr2:79350028 chr2:79350029 synonymous SNV . 0 22 hm5C_associated_SNPs_108367 0 0 0 0 2 REG1A chr2:79349967 3'AG 79349967 Downstream 63bp
chr2 79350029 79350029 1 + C A LUAD 79350028 + 79350008 79350048 41 CAAGTCCTGGGGCATTGGAGCCCCAAGCAGTGTTAATCCTG CAAGTCCTGGGGCATTGGAGCACCAAGCAGTGTTAATCCTG < 41bp 0.513346526650377 0.763585406318181 0.7031073 0.46114033 prediction 0.500477759335608 Functional Gain - REG1A ENSG00000115386 CDS Human protein_coding chr2:79350028 chr2:79350029 synonymous SNV . 0 22 hm5C_associated_SNPs_108367 0 0 0 0 2 REG1A chr2:79350078 5'GT 79350078 Upstream 50bp
chr8 22426700 22426700 1 + C A LUAD 22426699 + 22426679 22426719 41 ATCCCTAAGCCCATCAAGCCCCCGACCTACCAGGTGCTGGA ATCCCTAAGCCCATCAAGCCCACGACCTACCAGGTGCTGGA < 41bp 0.516059846830267 0.766281429582715 0.25867686 0.19127959 prediction 0.500443165504895 Functional Gain - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22426699 chr8:22426700 nonsynonymous SNV 0.832 0 22 hm5C_associated_SNPs_108369 0 0 1 0 2 SORBS3 chr8:22426661 3'AG 22426661 Downstream 40bp
chr8 22426700 22426700 1 + C A LUAD 22426699 + 22426679 22426719 41 ATCCCTAAGCCCATCAAGCCCCCGACCTACCAGGTGCTGGA ATCCCTAAGCCCATCAAGCCCACGACCTACCAGGTGCTGGA < 41bp 0.516059846830267 0.766281429582715 0.25867686 0.19127959 prediction 0.500443165504895 Functional Gain - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22426699 chr8:22426700 nonsynonymous SNV 0.832 0 22 hm5C_associated_SNPs_108369 0 0 1 0 2 SORBS3 chr8:22426786 5'GT 22426786 Upstream 87bp
chr19 10818212 10818212 1 + T C COAD 10818210 + 10818190 10818230 41 TGGACCGGTGCATTGCAGCCCATCAGCGGCCGGACAAGCAG TGGACCGGTGCATTGCAGCCCACCAGCGGCCGGACAAGCAG < 41bp 0.565134893874828 0.815351606379747 0.411464 0.3475737 prediction 0.500433425009839 Functional Gain - QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10818210 chr19:10818212 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_108370 0 0 1 0 2 QTRT1 chr19:10818176 3'AG 10818176 Downstream 37bp
chr19 10818212 10818212 1 + T C COAD 10818210 + 10818190 10818230 41 TGGACCGGTGCATTGCAGCCCATCAGCGGCCGGACAAGCAG TGGACCGGTGCATTGCAGCCCACCAGCGGCCGGACAAGCAG < 41bp 0.565134893874828 0.815351606379747 0.411464 0.3475737 prediction 0.500433425009839 Functional Gain - QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10818210 chr19:10818212 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_108370 0 0 1 0 2 QTRT1 chr19:10818291 5'GT 10818291 Upstream 80bp
chr17 18005286 18005286 1 + C T STAD 18005285 + 18005265 18005305 41 GAAGAGGTGGACCGCCTGGCCCGAAAACCCAACAGTGTGGT GAAGAGGTGGACCGCCTGGCCTGAAAACCCAACAGTGTGGT < 41bp 0.496941592860729 0.750213467767998 0.06909227 0.07844007 prediction 0.500426935535996 Functional Gain - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18005285 chr17:18005286 stopgain 0.511 1 22 hm5C_associated_SNPs_108371 0 0 1 0 2 DRG2 chr17:18005235 3'AG 18005235 Downstream 52bp
chr17 18005286 18005286 1 + C T STAD 18005285 + 18005265 18005305 41 GAAGAGGTGGACCGCCTGGCCCGAAAACCCAACAGTGTGGT GAAGAGGTGGACCGCCTGGCCTGAAAACCCAACAGTGTGGT < 41bp 0.496941592860729 0.750213467767998 0.06909227 0.07844007 prediction 0.500426935535996 Functional Gain - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18005285 chr17:18005286 stopgain 0.511 1 22 hm5C_associated_SNPs_108371 0 0 1 0 2 DRG2 chr17:18005311 5'GT 18005311 Upstream 26bp
chr9 74533416 74533416 1 + C G rs373558784 74533415 + 74533395 74533435 41 GGGTCCCCAGCCCCCGACCCCCGCATCGGTCCATGGCCTGT GGGTCCCCAGCCCCCGACCCCGGCATCGGTCCATGGCCTGT < 41bp 0.591529695919027 0.841724566944566 0.18837565 0.6252076 prediction 0.500389742051078 Functional Gain - C9orf85 ENSG00000155621 UTR3 Human protein_coding chr9:74533415 chr9:74533416 . . 0 22 hm5C_associated_SNPs_108374 0 0 0 0 2 C9orf85 chr9:74533341 3'AG 74533341 Downstream 76bp
chr9 74533416 74533416 1 + C G rs373558784 74533415 + 74533395 74533435 41 GGGTCCCCAGCCCCCGACCCCCGCATCGGTCCATGGCCTGT GGGTCCCCAGCCCCCGACCCCGGCATCGGTCCATGGCCTGT < 41bp 0.591529695919027 0.841724566944566 0.18837565 0.6252076 prediction 0.500389742051078 Functional Gain - C9orf85 ENSG00000155621 UTR3 Human protein_coding chr9:74533415 chr9:74533416 . . 0 22 hm5C_associated_SNPs_108374 0 0 0 0 2 C9orf85 chr9:74533471 5'GT 74533471 Upstream 56bp
chr22 25264409 25264409 1 + C T SKCM 25264408 + 25264388 25264428 41 AGAGGCCGCCCTTCCGCTTCCCCAAGGGCGGGCACCTCCTG AGAGGCCGCCCTTCCGCTTCCTCAAGGGCGGGCACCTCCTG < 41bp 0.555124141089702 0.805302468550956 0.49037915 0.6273808 prediction 0.500356654922508 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25264408 chr22:25264409 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_108377 0 0 0 0 2 SGSM1 chr22:25264343 3'AG 25264343 Downstream 67bp
chr22 25264409 25264409 1 + C T SKCM 25264408 + 25264388 25264428 41 AGAGGCCGCCCTTCCGCTTCCCCAAGGGCGGGCACCTCCTG AGAGGCCGCCCTTCCGCTTCCTCAAGGGCGGGCACCTCCTG < 41bp 0.555124141089702 0.805302468550956 0.49037915 0.6273808 prediction 0.500356654922508 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25264408 chr22:25264409 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_108377 0 0 0 0 2 SGSM1 chr22:25264506 5'GT 25264506 Upstream 98bp
chr11 65403915 65403915 1 + C A COAD 65403911 + 65403891 65403931 41 CCTGGCTGGGGGCCGCGGTCCTCCCTGAGTGGCTCTGGTGA CCTGGCTGGGGGCCGCGGTCCTCCATGAGTGGCTCTGGTGA < 41bp 0.329485560897651 0.750168153859256 0.2924895 0.9656416 prediction 0.500336307718512 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403911 chr11:65403915 nonsynonymous SNV 0.918 0 25 hm5C_associated_SNPs_108379 0 0 1 0 1 PCNX3 chr11:65403862 3'AG 65403862 Downstream 54bp
chr17 80544992 80544992 1 + C T GBM 80544991 + 80544971 80545011 41 GCCACGCTCGGCACTGCCAGCCGGATCATTCAGACGGCACA GCCACGCTCGGCACTGCCAGCTGGATCATTCAGACGGCACA < 41bp 0.510654760477315 0.760805336947737 0.9051984 0.5027793 prediction 0.500301152940845 Functional Gain - FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80544991 chr17:80544992 nonsynonymous SNV 0.335 5 22 hm5C_associated_SNPs_108381 0 0 1 0 1 FOXK2 chr17:80544939 3'AG 80544939 Downstream 54bp
chr3 185434316 185434316 1 + C A UCEC 185434315 + 185434295 185434335 41 GGGGAAGTGGGCTGCTTTATCCTGTAGCCCTCCTCAGATGC GGGGAAGTGGGCTGCTTTATCATGTAGCCCTCCTCAGATGC < 41bp 0.503003579876792 0.753129045316616 0.24044254 0.7187252 prediction 0.500250930879647 Functional Gain - IGF2BP2-AS1 ENSG00000163915 CDS Human antisense chr3:185434315 chr3:185434316 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_108384 0 0 0 0 2 IGF2BP2-AS1 chr3:185434229 3'AG 185434229 Downstream 88bp
chr3 185434316 185434316 1 + C A UCEC 185434315 + 185434295 185434335 41 GGGGAAGTGGGCTGCTTTATCCTGTAGCCCTCCTCAGATGC GGGGAAGTGGGCTGCTTTATCATGTAGCCCTCCTCAGATGC < 41bp 0.503003579876792 0.753129045316616 0.24044254 0.7187252 prediction 0.500250930879647 Functional Gain - IGF2BP2-AS1 ENSG00000163915 CDS Human antisense chr3:185434315 chr3:185434316 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_108384 0 0 0 0 2 IGF2BP2-AS1 chr3:185434372 5'GT 185434372 Upstream 57bp
chr16 2569311 2569311 1 + C T SKCM 2569310 + 2569290 2569330 41 CAGATCATGAAGTCCATCATCCCAGTGGTCATGGCTGGCAT CAGATCATGAAGTCCATCATCTCAGTGGTCATGGCTGGCAT < 41bp 0.516597055589884 0.766709910145407 0.34579018 0.2650957 prediction 0.500225709111046 Functional Gain - ATP6V0C ENSG00000185883;ENSG00000260272 CDS Human other chr16:2569310 chr16:2569311 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_108387 0 0 1 0 2 ATP6V0C chr16:2569219 3'AG 2569219 Downstream 93bp
chr16 2569311 2569311 1 + C T SKCM 2569310 + 2569290 2569330 41 CAGATCATGAAGTCCATCATCCCAGTGGTCATGGCTGGCAT CAGATCATGAAGTCCATCATCTCAGTGGTCATGGCTGGCAT < 41bp 0.516597055589884 0.766709910145407 0.34579018 0.2650957 prediction 0.500225709111046 Functional Gain - ATP6V0C ENSG00000185883;ENSG00000260272 CDS Human protein_coding chr16:2569310 chr16:2569311 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_108387 0 0 1 0 2 ATP6V0C chr16:2569402 5'GT 2569402 Upstream 92bp
chr20 31671246 31671246 1 + T G COAD 31671244 + 31671224 31671264 41 TATATACCAACGGCAAAAAACTTGATGGTATTTACCAGTAT TATATACCAACGGCAAAAAACTGGATGGTATTTACCAGTAT < 41bp 0.625726404443273 0.875838093188767 0.1615645 0.53368556 prediction 0.500223377490989 Functional Gain - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31671244 chr20:31671246 synonymous SNV . 0 23 hm5C_associated_SNPs_108388 0 0 0 0 1 BPIFB4 chr20:31671173 3'AG 31671173 Downstream 74bp
chr10 102894117 102894117 1 + C A UCEC 102894116 + 102894096 102894136 41 GTCAAAACCTGGTTCCAGAACCGGCGGACAAAGTGGAGGTG GTCAAAACCTGGTTCCAGAACAGGCGGACAAAGTGGAGGTG < 41bp 0.51947337628271 0.769565856282684 0.89923847 0.88257515 prediction 0.500184959999948 Functional Gain - TLX1 ENSG00000107807 CDS Human protein_coding chr10:102894116 chr10:102894117 synonymous SNV . 0 22 hm5C_associated_SNPs_108393 0 0 0 0 1 TLX1 chr10:102894133 5'GT 102894133 Upstream 17bp
chr3 138170899 138170899 1 + C T SKCM 138170898 + 138170878 138170918 41 CTTCTTTCCTAGATCCACTTCCCGGACGTGGAGCGGGTCGA CTTCTTTCCTAGATCCACTTCTCGGACGTGGAGCGGGTCGA < 41bp 0.498105390975117 0.750080612636634 0.1523537 0.101388305 prediction 0.500161225273267 Functional Gain - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138170898 chr3:138170899 nonsynonymous SNV 0.972 3 22 hm5C_associated_SNPs_108395 0 0 0 0 2 ESYT3 chr3:138170890 3'AG 138170890 Downstream 10bp
chr3 138170899 138170899 1 + C T SKCM 138170898 + 138170878 138170918 41 CTTCTTTCCTAGATCCACTTCCCGGACGTGGAGCGGGTCGA CTTCTTTCCTAGATCCACTTCTCGGACGTGGAGCGGGTCGA < 41bp 0.498105390975117 0.750080612636634 0.1523537 0.101388305 prediction 0.500161225273267 Functional Gain - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138170898 chr3:138170899 nonsynonymous SNV 0.972 3 22 hm5C_associated_SNPs_108395 0 0 0 0 2 ESYT3 chr3:138170931 5'GT 138170931 Upstream 33bp
chr1 1451459 1451459 1 + C G BLCA 1451458 + 1451438 1451478 41 GCTGCAGTTGGAGCAACAGTCCAAGCTCAAAGTGAGTGGGG GCTGCAGTTGGAGCAACAGTCGAAGCTCAAAGTGAGTGGGG < 41bp 0.444409240904828 0.750052602551149 0.3297152 0.89400375 prediction 0.500105205102299 Functional Gain - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1451458 chr1:1451459 synonymous SNV . 0 22 hm5C_associated_SNPs_108403 0 0 0 0 2 ATAD3A chr1:1451392 3'AG 1451392 Downstream 68bp
chr1 1451459 1451459 1 + C G BLCA 1451458 + 1451438 1451478 41 GCTGCAGTTGGAGCAACAGTCCAAGCTCAAAGTGAGTGGGG GCTGCAGTTGGAGCAACAGTCGAAGCTCAAAGTGAGTGGGG < 41bp 0.444409240904828 0.750052602551149 0.3297152 0.89400375 prediction 0.500105205102299 Functional Gain - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1451458 chr1:1451459 synonymous SNV . 0 22 hm5C_associated_SNPs_108403 0 0 0 0 2 ATAD3A chr1:1451468 5'GT 1451468 Upstream 10bp
chr2 9616161 9616161 1 + C G rs61732203 9616157 + 9616137 9616177 41 TGGGGAGCATCGCTGGCTGACAGGCTGGTCAGGTGAGAATG TGGGGAGCATCGCTGGCTGACAGGGTGGTCAGGTGAGAATG < 41bp 0.583621690650706 0.833667270179293 0.75250846 0.907238 prediction 0.500091159057175 Functional Gain - IAH1 ENSG00000134330 CDS Human protein_coding chr2:9616157 chr2:9616161 nonsynonymous SNV 0.976 2 25 hm5C_associated_SNPs_108406 0 0 1 0 2 IAH1 chr2:9616116 3'AG 9616116 Downstream 46bp
chr2 9616161 9616161 1 + C G rs61732203 9616157 + 9616137 9616177 41 TGGGGAGCATCGCTGGCTGACAGGCTGGTCAGGTGAGAATG TGGGGAGCATCGCTGGCTGACAGGGTGGTCAGGTGAGAATG < 41bp 0.583621690650706 0.833667270179293 0.75250846 0.907238 prediction 0.500091159057175 Functional Gain - IAH1 ENSG00000134330 CDS Human protein_coding chr2:9616157 chr2:9616161 nonsynonymous SNV 0.976 2 25 hm5C_associated_SNPs_108406 0 0 1 0 2 IAH1 chr2:9616168 5'GT 9616168 Upstream 8bp
chr5 131607046 131607046 1 + T C BLCA 131607044 + 131607024 131607064 41 AGCCGGGACTGCAGAGTCGACCTGGGCTCCGAGGTGTACAG AGCCGGGACTGCAGAGTCGACCCGGGCTCCGAGGTGTACAG < 41bp 0.496025306712235 0.750018014391713 0.60910416 0.87706685 prediction 0.500036028783426 Functional Gain - PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131607044 chr5:131607046 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_108413 0 0 0 0 1 PDLIM4 chr5:131606996 3'AG 131606996 Downstream 51bp
chr5 178369801 178369801 1 + C A HNSC 178369797 + 178369777 178369817 41 CATCGGAGAAGAAAGAATGGCTGTCAGCCACCTGCCAACCA CATCGGAGAAGAAAGAATGGCTGTAAGCCACCTGCCAACCA < 41bp 0.328821075966122 0.750013004023866 0.09580809 0.1387018 prediction 0.500026008047732 Functional Gain - ZNF454 ENSG00000178187 CDS Human protein_coding chr5:178369797 chr5:178369801 synonymous SNV . 0 25 hm5C_associated_SNPs_108414 0 0 0 0 1 ZNF454 chr5:178369825 5'GT 178369825 Upstream 25bp
chr12 2797893 2797893 1 + C A PAAD 2797889 + 2797869 2797909 41 TCTCCCTCATGGTGCCCAGCCAGGCTGGGGCCCCAGGGAGG TCTCCCTCATGGTGCCCAGCCAGGATGGGGCCCCAGGGAGG < 41bp 0.477599783173488 0.75001094662528 0.6593307 0.7769089 prediction 0.500021893250561 Functional Gain - CACNA1C ENSG00000151067 CDS Human protein_coding chr12:2797889 chr12:2797893 nonsynonymous SNV 0.473 0 25 hm5C_associated_SNPs_108415 0 0 0 0 1 CACNA1C chr12:2797945 5'GT 2797945 Upstream 53bp
chr14 67770269 67770269 1 + C T UCEC 67770268 + 67770248 67770288 41 CATGGTACTTTGACTTTTGTCCTGATTCCCAGTCAACAGAT CATGGTACTTTGACTTTTGTCTTGATTCCCAGTCAACAGAT < 41bp 0.497911937338845 0.750003924725656 0.10948253 0.21056837 prediction 0.500007849451312 Functional Gain - MPP5 ENSG00000072415 CDS Human protein_coding chr14:67770268 chr14:67770269 synonymous SNV . 0 22 hm5C_associated_SNPs_108416 0 0 1 0 2 MPP5 chr14:67770239 3'AG 67770239 Downstream 31bp
chr14 67770269 67770269 1 + C T UCEC 67770268 + 67770248 67770288 41 CATGGTACTTTGACTTTTGTCCTGATTCCCAGTCAACAGAT CATGGTACTTTGACTTTTGTCTTGATTCCCAGTCAACAGAT < 41bp 0.497911937338845 0.750003924725656 0.10948253 0.21056837 prediction 0.500007849451312 Functional Gain - MPP5 ENSG00000072415 CDS Human protein_coding chr14:67770268 chr14:67770269 synonymous SNV . 0 22 hm5C_associated_SNPs_108416 0 0 1 0 2 MPP5 chr14:67770316 5'GT 67770316 Upstream 48bp
chr8 145235425 145235425 1 + C A rs199893550 145235424 + 145235404 145235444 41 GGTGCGCGTGGCCTTCTGCTCCGGTAAGAGGCGGCCTCGTC GGTGCGCGTGGCCTTCTGCTCAGGTAAGAGGCGGCCTCGTC < 41bp 0.496222299977535 0.750002971370601 0.6350361 0.85080826 prediction 0.500005942741202 Functional Gain - MROH1 ENSG00000179832 CDS Human protein_coding chr8:145235424 chr8:145235425 synonymous SNV . 0 22 hm5C_associated_SNPs_108417 0 0 1 0 1 MROH1 chr8:145235426 5'GT 145235426 Upstream 2bp
chr10 99213292 99213292 1 + C A KIRC 99213288 + 99213268 99213308 41 TTAATCATTTCCCAACCAGCCTGGCTAAACAATTGTGTGGG TTAATCATTTCCCAACCAGCCTGGATAAACAATTGTGTGGG < 41bp 0.334158732317471 0.749984358639947 0.36427552 0.39534765 prediction 0.499968717279895 Functional Gain - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99213288 chr10:99213292 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_108421 0 0 0 1 1 ZDHHC16 chr10:99213287 3'AG 99213287 Downstream 6bp
chr14 93275769 93275769 1 + C A STAD 93275768 + 93275748 93275788 41 AGCTGTGGCTGCAAAGGATTCCCAGCTGGCTGTACTGAAAG AGCTGTGGCTGCAAAGGATTCACAGCTGGCTGTACTGAAAG < 41bp 0.498584200757579 0.749984233680559 0.021073252 0.03897813 prediction 0.499968467361118 Functional Gain - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93275768 chr14:93275769 synonymous SNV . 0 22 hm5C_associated_SNPs_108422 0 0 1 0 1 GOLGA5 chr14:93275864 5'GT 93275864 Upstream 96bp
chr11 563412 563412 1 + C G rs140192306 563408 + 563388 563428 41 ACCCACAGGGCCCTCTGCCTCCAGCCAGAGAGGAGTCCCTC ACCCACAGGGCCCTCTGCCTCCAGGCAGAGAGGAGTCCCTC < 41bp 0.573526580443401 0.823496850784534 0.40115213 0.88245106 prediction 0.499940540682266 Functional Gain - RASSF7 ENSG00000099849 CDS Human protein_coding chr11:563408 chr11:563412 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_108424 0 0 1 0 1 RASSF7 chr11:563396 3'AG 563396 Downstream 17bp
chr2 112686781 112686781 1 + C A COAD 112686780 + 112686760 112686800 41 GCCTGCAAACTGACCACACACCGCTGTTATCCCTTCCTCAC GCCTGCAAACTGACCACACACAGCTGTTATCCCTTCCTCAC < 41bp 0.526661837492892 0.776622429551517 0.15922576 0.35550493 prediction 0.49992118411725 Functional Gain - MERTK ENSG00000153208 CDS Human protein_coding chr2:112686780 chr2:112686781 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_108426 0 0 1 0 1 MERTK chr2:112686697 3'AG 112686697 Downstream 85bp
chr17 76164758 76164758 1 + C G rs11557900 76164757 + 76164737 76164777 41 TCCTTCGACCTGCGGCGCTTCCTGACGCAGCCGCAGGTGGT TCCTTCGACCTGCGGCGCTTCGTGACGCAGCCGCAGGTGGT < 41bp 0.583257185102281 0.833213721263317 0.25266033 0.39120048 prediction 0.499913072322072 Functional Gain - SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76164757 chr17:76164758 nonsynonymous SNV 0.985 0 22 hm5C_associated_SNPs_108428 0 0 1 0 1 SYNGR2 chr17:76164796 5'GT 76164796 Upstream 39bp
chr22 21403376 21403376 1 + C G rs28450680 21403375 + 21403355 21403395 41 GCAGGCGGCCCAGCACCTTGCCGAACTCCTGCTGGCCCACA GCAGGCGGCCCAGCACCTTGCGGAACTCCTGCTGGCCCACA < 41bp 0.611192684539354 0.861105880249738 0.5249385 0.9037255 prediction 0.499826391420768 Functional Gain - LRRC74B ENSG00000187905 CDS Human protein_coding chr22:21403375 chr22:21403376 synonymous SNV . 0 22 hm5C_associated_SNPs_108433 0 0 0 0 1 LRRC74B chr22:21403446 5'GT 21403446 Upstream 71bp
chr22 44602247 44602247 1 + T G STAD 44602244 + 44602224 44602264 41 CACTGAGGGTGCTCTATGGTCTGTTCTGCAAGCACACGCAG CACTGAGGGTGCTCTATGGTCTGGTCTGCAAGCACACGCAG < 41bp 0.355386422969145 0.749913053611757 0.17617247 0.39864662 prediction 0.499826107223515 Functional Gain - PARVG ENSG00000138964 CDS Human protein_coding chr22:44602244 chr22:44602247 nonsynonymous SNV 0.013 4 24 hm5C_associated_SNPs_108434 0 0 0 2 1 PARVG chr22:44602197 3'AG 44602197 Downstream 51bp
chr15 29397662 29397662 1 + C T LUAD 29397661 + 29397641 29397681 41 GCGAGCCAATGGCATCAACCCCGAAGACTTGAGCCAGAAGG GCGAGCCAATGGCATCAACCCTGAAGACTTGAGCCAGAAGG < 41bp 0.517723550594759 0.767629646133525 0.025934666 0.016554952 prediction 0.499812191077532 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29397661 chr15:29397662 synonymous SNV . 0 22 hm5C_associated_SNPs_108436 0 0 1 0 2 APBA2 chr15:29397582 3'AG 29397582 Downstream 81bp
chr15 29397662 29397662 1 + C T LUAD 29397661 + 29397641 29397681 41 GCGAGCCAATGGCATCAACCCCGAAGACTTGAGCCAGAAGG GCGAGCCAATGGCATCAACCCTGAAGACTTGAGCCAGAAGG < 41bp 0.517723550594759 0.767629646133525 0.025934666 0.016554952 prediction 0.499812191077532 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29397661 chr15:29397662 synonymous SNV . 0 22 hm5C_associated_SNPs_108436 0 0 1 0 2 APBA2 chr15:29397761 5'GT 29397761 Upstream 100bp
chr5 3600372 3600372 1 + C A LIHC 3600368 + 3600348 3600388 41 CGGTCCGCAGCAGCCCCACGCTCCCAGGTACAGCTCCAGGC CGGTCCGCAGCAGCCCCACGCTCCAAGGTACAGCTCCAGGC < 41bp 0.329661145725025 0.749892430480738 0.104379356 0.9359561 prediction 0.499784860961475 Functional Gain - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3600368 chr5:3600372 nonsynonymous SNV 0.033 0 25 hm5C_associated_SNPs_108437 0 0 0 0 1 IRX1 chr5:3600374 5'GT 3600374 Upstream 3bp
chr2 33003043 33003043 1 + C T SKCM 33003042 + 33003022 33003062 41 AGCGCTGTGTGACTCTAGAACCCGATGTAAGTTTGTTTGAT AGCGCTGTGTGACTCTAGAACTCGATGTAAGTTTGTTTGAT < 41bp 0.523022835688207 0.772915079017558 0.19736543 0.38362882 prediction 0.499784486658702 Functional Gain - TTC27 ENSG00000018699 CDS Human protein_coding chr2:33003042 chr2:33003043 nonsynonymous SNV 0.946 3 22 hm5C_associated_SNPs_108438 0 0 1 1 2 TTC27 chr2:33002949 3'AG 33002949 Downstream 95bp
chr2 33003043 33003043 1 + C T SKCM 33003042 + 33003022 33003062 41 AGCGCTGTGTGACTCTAGAACCCGATGTAAGTTTGTTTGAT AGCGCTGTGTGACTCTAGAACTCGATGTAAGTTTGTTTGAT < 41bp 0.523022835688207 0.772915079017558 0.19736543 0.38362882 prediction 0.499784486658702 Functional Gain - TTC27 ENSG00000018699 CDS Human protein_coding chr2:33003042 chr2:33003043 nonsynonymous SNV 0.946 3 22 hm5C_associated_SNPs_108438 0 0 1 1 2 TTC27 chr2:33003047 5'GT 33003047 Upstream 5bp
chr6 131902433 131902433 1 + C A SKCM 131902429 + 131902409 131902449 41 GAGTCATCTGGGTGGATGCTCACACTGATATCAACACTCCA GAGTCATCTGGGTGGATGCTCACAATGATATCAACACTCCA < 41bp 0.332228856337137 0.749891919067113 0.08549085 0.105691016 prediction 0.499783838134225 Functional Gain - ARG1 ENSG00000118520 CDS Human protein_coding chr6:131902429 chr6:131902433 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_108439 0 0 0 0 2 ARG1 chr6:131902359 3'AG 131902359 Downstream 75bp
chr6 131902433 131902433 1 + C A SKCM 131902429 + 131902409 131902449 41 GAGTCATCTGGGTGGATGCTCACACTGATATCAACACTCCA GAGTCATCTGGGTGGATGCTCACAATGATATCAACACTCCA < 41bp 0.332228856337137 0.749891919067113 0.08549085 0.105691016 prediction 0.499783838134225 Functional Gain - ARG1 ENSG00000118520 CDS Human protein_coding chr6:131902429 chr6:131902433 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_108439 0 0 0 0 2 ARG1 chr6:131902518 5'GT 131902518 Upstream 86bp
chr1 63069829 63069829 1 + C A LIHC 63069828 + 63069808 63069848 41 GCAATGTCCCCAATGCAATCCCGGAAAACAAAGATTTGGTG GCAATGTCCCCAATGCAATCCAGGAAAACAAAGATTTGGTG < 41bp 0.504656130976322 0.754533437237317 0.12502456 0.2810409 prediction 0.49975461252199 Functional Gain - ANGPTL3 ENSG00000132855 CDS Human protein_coding chr1:63069828 chr1:63069829 nonsynonymous SNV 0.358 2 22 hm5C_associated_SNPs_108440 0 0 0 0 1 ANGPTL3 chr1:63069906 5'GT 63069906 Upstream 78bp
chr19 3942129 3942129 1 + T C UCEC 3942127 + 3942107 3942147 41 GAGGAGCTCTTCCGTGAAGTCCTGGAAGACATTCAGAACTC GAGGAGCTCTTCCGTGAAGTCCCGGAAGACATTCAGAACTC < 41bp 0.487016791722314 0.749870994300655 0.045990795 0.08676943 prediction 0.49974198860131 Functional Gain - NMRK2 ENSG00000077009 CDS Human protein_coding chr19:3942127 chr19:3942129 nonsynonymous SNV 0.111 2 23 hm5C_associated_SNPs_108443 0 0 0 0 1 NMRK2 chr19:3942081 3'AG 3942081 Downstream 49bp
chr5 140021554 140021554 1 + C A rs528915325 140021553 + 140021533 140021573 41 CCTGCATGAGCTCTCTCACTCCGAGCAGTCCACTGTTGCTG CCTGCATGAGCTCTCTCACTCAGAGCAGTCCACTGTTGCTG < 41bp 0.524373568503909 0.774227322082171 0.62263894 0.9288479 prediction 0.499707507156525 Functional Gain - TMCO6 ENSG00000113119 CDS Human protein_coding chr5:140021553 chr5:140021554 synonymous SNV . 0 22 hm5C_associated_SNPs_108446 0 0 1 0 2 TMCO6 chr5:140021455 3'AG 140021455 Downstream 100bp
chr5 140021554 140021554 1 + C A rs528915325 140021553 + 140021533 140021573 41 CCTGCATGAGCTCTCTCACTCCGAGCAGTCCACTGTTGCTG CCTGCATGAGCTCTCTCACTCAGAGCAGTCCACTGTTGCTG < 41bp 0.524373568503909 0.774227322082171 0.62263894 0.9288479 prediction 0.499707507156525 Functional Gain - TMCO6 ENSG00000113119 CDS Human protein_coding chr5:140021553 chr5:140021554 synonymous SNV . 0 22 hm5C_associated_SNPs_108446 0 0 1 0 2 TMCO6 chr5:140021638 5'GT 140021638 Upstream 85bp
chr5 118970400 118970400 1 + C A UCEC 118970396 + 118970376 118970416 41 GAGATCCTGGAGCCAATGTCCAGGCTGTGTGTTTCATTCTC GAGATCCTGGAGCCAATGTCCAGGATGTGTGTTTCATTCTC < 41bp 0.669756040866273 0.919601077483669 0.67666423 0.60996294 prediction 0.499690073234792 Functional Gain - FAM170A ENSG00000164334 CDS Human protein_coding chr5:118970396 chr5:118970400 synonymous SNV . 0 25 hm5C_associated_SNPs_108448 0 0 0 0 1 FAM170A chr5:118970429 5'GT 118970429 Upstream 30bp
chr14 74008216 74008216 1 + C A rs201966235 74008212 + 74008192 74008232 41 CCAAGAACCTGGGCCCTTTCCTGGCATTGTGGACATGTTCG CCAAGAACCTGGGCCCTTTCCTGGAATTGTGGACATGTTCG < 41bp 0.67902413029971 0.928867020221345 0.45898017 0.43176377 prediction 0.499685779843271 Functional Gain - ACOT1 ENSG00000184227 CDS Human protein_coding chr14:74008212 chr14:74008216 synonymous SNV . 0 25 hm5C_associated_SNPs_108449 0 0 0 0 1 ACOT1 chr14:74008197 3'AG 74008197 Downstream 20bp
chr15 89164567 89164567 1 + C G rs578229257 89164563 + 89164543 89164583 41 GCCCGGGCATGTGGGAGCTGCCGGCTTTCCGGACGCCACGT GCCCGGGCATGTGGGAGCTGCCGGGTTTCCGGACGCCACGT < 41bp 0.578651166888553 0.828490501251673 0.9290039 0.93935966 prediction 0.499678668726241 Functional Gain - AEN ENSG00000181026 UTR5 Human protein_coding chr15:89164563 chr15:89164567 . . 0 25 hm5C_associated_SNPs_108450 0 0 1 0 1 AEN chr15:89164613 5'GT 89164613 Upstream 47bp
chr3 110837599 110837599 1 + C T SKCM 110837598 + 110837578 110837618 41 GCATCGCAGCCACTGGAAAACCCGTTGCACATATTGACTGG GCATCGCAGCCACTGGAAAACTCGTTGCACATATTGACTGG < 41bp 0.503511682887588 0.753336309874147 0.19640559 0.11193952 prediction 0.499649253973119 Functional Gain - NECTIN3 ENSG00000177707 CDS Human protein_coding chr3:110837598 chr3:110837599 nonsynonymous SNV 0.978 4 22 hm5C_associated_SNPs_108452 0 0 1 0 1 NECTIN3 chr3:110837503 3'AG 110837503 Downstream 97bp
chr19 806426 806426 1 + T G SKCM 806424 + 806404 806444 41 CCAGGCCTTTCCGTTCCGAACGTCCACGGCGCCCTGGCCCC CCAGGCCTTTCCGTTCCGAACGGCCACGGCGCCCTGGCCCC < 41bp 0.393157113371501 0.749819723661741 0.40127861 0.43871766 prediction 0.499639447323481 Functional Gain - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806424 chr19:806426 nonsynonymous SNV 0.006 0 23 hm5C_associated_SNPs_108453 0 0 1 0 1 PTBP1 chr19:806408 3'AG 806408 Downstream 19bp
chr5 3601123 3601123 1 + C G LUAD 3601122 + 3601102 3601142 41 TGGCCCCGCAGGAGGGAACGCCGCGGATCCTAGCAGCCCTC TGGCCCCGCAGGAGGGAACGCGGCGGATCCTAGCAGCCCTC < 41bp 0.60027086583923 0.850086693533603 0.8956742 0.90973693 prediction 0.499631655388746 Functional Gain - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3601122 chr5:3601123 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_108454 0 0 0 0 1 IRX1 chr5:3601097 3'AG 3601097 Downstream 27bp
chr9 131767989 131767989 1 + C T UCEC 131767988 + 131767968 131768008 41 TACCACTCCCACCTTTGACTCCGAAGTGGCCCCCTCCTTCG TACCACTCCCACCTTTGACTCTGAAGTGGCCCCCTCCTTCG < 41bp 0.498375826180581 0.749794605544015 0.05538678 0.04406333 prediction 0.49958921108803 Functional Gain - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131767988 chr9:131767989 synonymous SNV . 0 22 hm5C_associated_SNPs_108456 0 0 1 0 2 NUP188 chr9:131767924 3'AG 131767924 Downstream 66bp
chr9 131767989 131767989 1 + C T UCEC 131767988 + 131767968 131768008 41 TACCACTCCCACCTTTGACTCCGAAGTGGCCCCCTCCTTCG TACCACTCCCACCTTTGACTCTGAAGTGGCCCCCTCCTTCG < 41bp 0.498375826180581 0.749794605544015 0.05538678 0.04406333 prediction 0.49958921108803 Functional Gain - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131767988 chr9:131767989 synonymous SNV . 0 22 hm5C_associated_SNPs_108456 0 0 1 0 2 NUP188 chr9:131768055 5'GT 131768055 Upstream 67bp
chr11 111899620 111899620 1 + C A READ 111899616 + 111899596 111899636 41 CCCCTGCTGCCACTGCTTCGCCACCTACACCTTCTGCTCAG CCCCTGCTGCCACTGCTTCGCCACATACACCTTCTGCTCAG < 41bp 0.345227316288501 0.749790295662437 0.046606004 0.17208102 prediction 0.499580591324873 Functional Gain - DLAT ENSG00000150768 CDS Human protein_coding chr11:111899616 chr11:111899620 nonsynonymous SNV 0.006 3 25 hm5C_associated_SNPs_108457 0 0 1 0 1 DLAT chr11:111899669 5'GT 111899669 Upstream 50bp
chrX 52655425 52655425 1 + C A THCA 52655424 + 52655404 52655444 41 TATTTTGATAATGACCGTAACCGCAGGATTCAGGGTGAGTA TATTTTGATAATGACCGTAACAGCAGGATTCAGGGTGAGTA < 41bp 0.504181025802972 0.753963939141361 0.7138514 0.33129987 prediction 0.499565826676778 Functional Gain - SSX8 ENSG00000157965 ncRNA_exonic Human unprocessed_pseudogene chrX:52655424 chrX:52655425 . . 0 22 hm5C_associated_SNPs_108458 0 0 0 0 1 SSX8 chrX:52655342 3'AG 52655342 Downstream 84bp
chr1 11844330 11844330 1 + C G rs10864543 11844329 + 11844309 11844349 41 GAGGAGAAGAGCACTGGGGGCCGTGTTTGCCACATGGCGGG GAGGAGAAGAGCACTGGGGGCGGTGTTTGCCACATGGCGGG < 41bp 0.452579116664728 0.749776754629611 0.1823973 0.43141207 prediction 0.499553509259222 Functional Gain - C1orf167 ENSG00000215910 CDS Human protein_coding chr1:11844329 chr1:11844330 synonymous SNV . 0 22 hm5C_associated_SNPs_108460 0 0 0 0 1 C1orf167 chr1:11844231 3'AG 11844231 Downstream 100bp
chr10 50916423 50916423 1 + T A LUAD 50916419 + 50916399 50916439 41 GTTCTCAGGCAAGCTCACCCCAAGTAGTGACAAGAGGACCA GTTCTCAGGCAAGCTCACCCCAAGAAGTGACAAGAGGACCA < 41bp 0.581417038007797 0.83117042028942 0.18517753 0.16816625 prediction 0.499506764563246 Functional Gain - C10orf53 ENSG00000178645 CDS Human protein_coding chr10:50916419 chr10:50916423 nonsynonymous SNV 0.040 1 25 hm5C_associated_SNPs_108462 0 0 0 0 1 C10orf53 chr10:50916407 3'AG 50916407 Downstream 17bp
chr1 153945266 153945266 1 + T A LUSC 153945262 + 153945242 153945282 41 TGACCGATGAGGAGAAGCGTCTGCTGGGGCAGGAAGGGGTT TGACCGATGAGGAGAAGCGTCTGCAGGGGCAGGAAGGGGTT < 41bp 0.631969987940328 0.881696894663802 0.75549054 0.8682262 prediction 0.499453813446949 Functional Gain - CREB3L4 ENSG00000143578 CDS Human protein_coding chr1:153945262 chr1:153945266 nonsynonymous SNV 0.996 5 25 hm5C_associated_SNPs_108467 0 0 1 0 2 CREB3L4 chr1:153945220 3'AG 153945220 Downstream 47bp
chr1 153945266 153945266 1 + T A LUSC 153945262 + 153945242 153945282 41 TGACCGATGAGGAGAAGCGTCTGCTGGGGCAGGAAGGGGTT TGACCGATGAGGAGAAGCGTCTGCAGGGGCAGGAAGGGGTT < 41bp 0.631969987940328 0.881696894663802 0.75549054 0.8682262 prediction 0.499453813446949 Functional Gain - CREB3L4 ENSG00000143578 CDS Human protein_coding chr1:153945262 chr1:153945266 nonsynonymous SNV 0.996 5 25 hm5C_associated_SNPs_108467 0 0 1 0 2 CREB3L4 chr1:153945312 5'GT 153945312 Upstream 47bp
chr2 187625877 187625877 1 + C A LUAD 187625873 + 187625853 187625893 41 TGAAGATTCCAAGGACATAACTGCCTACCACACAGTGTTTC TGAAGATTCCAAGGACATAACTGCATACCACACAGTGTTTC < 41bp 0.330576731487549 0.749726001590463 0.17098206 0.62416565 prediction 0.499452003180926 Functional Gain - FAM171B ENSG00000144369 CDS Human protein_coding chr2:187625873 chr2:187625877 synonymous SNV . 0 25 hm5C_associated_SNPs_108468 0 0 0 0 2 FAM171B chr2:187625840 3'AG 187625840 Downstream 38bp
chr2 187625877 187625877 1 + C A LUAD 187625873 + 187625853 187625893 41 TGAAGATTCCAAGGACATAACTGCCTACCACACAGTGTTTC TGAAGATTCCAAGGACATAACTGCATACCACACAGTGTTTC < 41bp 0.330576731487549 0.749726001590463 0.17098206 0.62416565 prediction 0.499452003180926 Functional Gain - FAM171B ENSG00000144369 CDS Human protein_coding chr2:187625873 chr2:187625877 synonymous SNV . 0 25 hm5C_associated_SNPs_108468 0 0 0 0 2 FAM171B chr2:187625963 5'GT 187625963 Upstream 87bp
chr12 58002312 58002312 1 + C T SKCM 58002311 + 58002291 58002331 41 CCTTCCTCCCAGGCTGAACACCCAAACCCAGGAGTTCGGTA CCTTCCTCCCAGGCTGAACACTCAAACCCAGGAGTTCGGTA < 41bp 0.52014468940128 0.769870364413107 0.26811418 0.5276833 prediction 0.499451350023653 Functional Gain - DTX3 ENSG00000178498 CDS Human protein_coding chr12:58002311 chr12:58002312 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_108469 0 0 1 0 1 DTX3 chr12:58002303 3'AG 58002303 Downstream 10bp
chr16 80583508 80583508 1 + T C COAD 80583506 + 80583486 80583526 41 CTCAGAACGACCTGACTTTTCTTAGGATCAGATCAAAGAAA CTCAGAACGACCTGACTTTTCTCAGGATCAGATCAAAGAAA < 41bp 0.525656598976796 0.775378467142303 0.06652978 0.03594908 prediction 0.499443736331014 Functional Gain - DYNLRB2 ENSG00000168589 CDS Human protein_coding chr16:80583506 chr16:80583508 synonymous SNV . 0 23 hm5C_associated_SNPs_108470 0 0 0 2 1 DYNLRB2 chr16:80583548 5'GT 80583548 Upstream 41bp
chr20 2384128 2384128 1 + C A OV 2384124 + 2384104 2384144 41 GGCTGGCAGGTTCTGGATGCCACCCCCCAGGAGGAGAGTGA GGCTGGCAGGTTCTGGATGCCACCACCCAGGAGGAGAGTGA < 41bp 0.321819483720855 0.749721241940799 0.060239792 0.1262483 prediction 0.499442483881598 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2384124 chr20:2384128 nonsynonymous SNV 0.977 5 25 hm5C_associated_SNPs_108472 0 0 0 0 2 TGM6 chr20:2384043 3'AG 2384043 Downstream 86bp
chr20 2384128 2384128 1 + C A OV 2384124 + 2384104 2384144 41 GGCTGGCAGGTTCTGGATGCCACCCCCCAGGAGGAGAGTGA GGCTGGCAGGTTCTGGATGCCACCACCCAGGAGGAGAGTGA < 41bp 0.321819483720855 0.749721241940799 0.060239792 0.1262483 prediction 0.499442483881598 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2384124 chr20:2384128 nonsynonymous SNV 0.977 5 25 hm5C_associated_SNPs_108472 0 0 0 0 2 TGM6 chr20:2384146 5'GT 2384146 Upstream 19bp
chr15 58840537 58840537 1 + C A COAD 58840536 + 58840516 58840556 41 CCCTGTGTTCCAGCCATCACCCAGACCATAAAATGCTCCCA CCCTGTGTTCCAGCCATCACCAAGACCATAAAATGCTCCCA < 41bp 0.521068689849899 0.770753006837851 0.24298665 0.3450418 prediction 0.499368633975903 Functional Gain - LIPC ENSG00000166035 CDS Human protein_coding chr15:58840536 chr15:58840537 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_108473 0 0 1 0 1 LIPC chr15:58840529 3'AG 58840529 Downstream 9bp
chr20 30155955 30155955 1 + C G UCS 30155951 + 30155931 30155971 41 TCCCCACAGTCTCGGGCTCCCCAGCCAGCCTGGCCGACTCC TCCCCACAGTCTCGGGCTCCCCAGGCAGCCTGGCCGACTCC < 41bp 0.467365457274819 0.749675180818156 0.042666048 0.16492522 prediction 0.499350361636313 Functional Gain - HM13 ENSG00000101294 CDS Human protein_coding chr20:30155951 chr20:30155955 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_108474 0 0 1 0 2 HM13 chr20:30155881 3'AG 30155881 Downstream 75bp
chr20 30155955 30155955 1 + C G UCS 30155951 + 30155931 30155971 41 TCCCCACAGTCTCGGGCTCCCCAGCCAGCCTGGCCGACTCC TCCCCACAGTCTCGGGCTCCCCAGGCAGCCTGGCCGACTCC < 41bp 0.467365457274819 0.749675180818156 0.042666048 0.16492522 prediction 0.499350361636313 Functional Gain - HM13 ENSG00000101294 CDS Human protein_coding chr20:30155951 chr20:30155955 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_108474 0 0 1 0 2 HM13 chr20:30156027 5'GT 30156027 Upstream 73bp
chr17 33510482 33510482 1 + C A STAD 33510478 + 33510458 33510498 41 TTCTTGGCTGACGGGAATGACCGGCTGAAGCTGGTGGTGCT TTCTTGGCTGACGGGAATGACCGGATGAAGCTGGTGGTGCT < 41bp 0.337509919149463 0.749674221262795 0.52135175 0.8050245 prediction 0.49934844252559 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33510478 chr17:33510482 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_108475 0 0 0 0 1 UNC45B chr17:33510446 3'AG 33510446 Downstream 37bp
chr12 113515832 113515832 1 + C A rs190645916 113515828 + 113515808 113515848 41 CGGGCGCCCCCGGCGGAGCGCGCACCCCGGGGCAGAACAAC CGGGCGCCCCCGGCGGAGCGCGCAACCCGGGGCAGAACAAC < 41bp 0.359488531865632 0.749668381743059 0.43241686 0.87642395 prediction 0.499336763486118 Functional Gain - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113515828 chr12:113515832 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_108476 0 0 0 0 1 DTX1 chr12:113515910 5'GT 113515910 Upstream 79bp
chr1 16074101 16074101 1 + C A LGG 16074100 + 16074080 16074120 41 CAGCCCCTGCCCTCGGCACCCCAGTCCCAGAGTTCGGCCCC CAGCCCCTGCCCTCGGCACCCAAGTCCCAGAGTTCGGCCCC < 41bp 0.505223864302955 0.754891915675819 0.062386543 0.18614262 prediction 0.499336102745728 Functional Gain - TMEM82 ENSG00000162460 CDS Human protein_coding chr1:16074100 chr1:16074101 nonsynonymous SNV 0.021 0 22 hm5C_associated_SNPs_108477 0 0 0 0 1 TMEM82 chr1:16074041 3'AG 16074041 Downstream 61bp
chr1 161187859 161187859 1 + C A DLBC 161187855 + 161187835 161187875 41 ATTGTCCTCACCCTCCTCTACTGTCGACTGAAGGTAGCGCT ATTGTCCTCACCCTCCTCTACTGTAGACTGAAGGTAGCGCT < 41bp 0.331969677773707 0.749659937686516 0.07440868 0.107578695 prediction 0.499319875373032 Functional Gain - FCER1G ENSG00000158869 CDS Human protein_coding chr1:161187855 chr1:161187859 synonymous SNV . 0 25 hm5C_associated_SNPs_108479 0 0 0 0 2 FCER1G chr1:161187776 3'AG 161187776 Downstream 84bp
chr1 161187859 161187859 1 + C A DLBC 161187855 + 161187835 161187875 41 ATTGTCCTCACCCTCCTCTACTGTCGACTGAAGGTAGCGCT ATTGTCCTCACCCTCCTCTACTGTAGACTGAAGGTAGCGCT < 41bp 0.331969677773707 0.749659937686516 0.07440868 0.107578695 prediction 0.499319875373032 Functional Gain - FCER1G ENSG00000158869 CDS Human protein_coding chr1:161187855 chr1:161187859 synonymous SNV . 0 25 hm5C_associated_SNPs_108479 0 0 0 0 2 FCER1G chr1:161187867 5'GT 161187867 Upstream 9bp
chr20 1903195 1903195 1 + T A LUAD 1903191 + 1903171 1903211 41 CACAGGGATGATGTGAAGCTCACCTGCCAGGTGGAGCATGA CACAGGGATGATGTGAAGCTCACCAGCCAGGTGGAGCATGA < 41bp 0.400543142774007 0.749656277934713 0.06765336 0.11449167 prediction 0.499312555869425 Functional Gain - SIRPA ENSG00000198053 CDS Human protein_coding chr20:1903191 chr20:1903195 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_108480 0 0 0 0 1 SIRPA chr20:1903291 5'GT 1903291 Upstream 97bp
chrX 10085225 10085225 1 + C A COAD 10085221 + 10085201 10085241 41 AGCCGCGGGTCCCTAGCCTCCAGCCGTGGGTCTCTGGCCTC AGCCGCGGGTCCCTAGCCTCCAGCAGTGGGTCTCTGGCCTC < 41bp 0.670921963429051 0.920570587618078 0.9150958 0.8976625 prediction 0.499297248378054 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10085221 chrX:10085225 nonsynonymous SNV 0.781 3 25 hm5C_associated_SNPs_108483 0 0 0 0 1 WWC3 chrX:10085164 3'AG 10085164 Downstream 62bp
chr20 49177930 49177930 1 + T G LUSC 49177928 + 49177908 49177948 41 ACATGAAGCCAGTGACTTCCCATGTAGAGTGGCCAAGCTTC ACATGAAGCCAGTGACTTCCCAGGTAGAGTGGCCAAGCTTC < 41bp 0.403296813398707 0.749648540596549 0.043194473 0.5080227 prediction 0.499297081193098 Functional Gain - PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49177928 chr20:49177930 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_108484 0 0 1 0 2 PTPN1 chr20:49177900 3'AG 49177900 Downstream 31bp
chr20 49177930 49177930 1 + T G LUSC 49177928 + 49177908 49177948 41 ACATGAAGCCAGTGACTTCCCATGTAGAGTGGCCAAGCTTC ACATGAAGCCAGTGACTTCCCAGGTAGAGTGGCCAAGCTTC < 41bp 0.403296813398707 0.749648540596549 0.043194473 0.5080227 prediction 0.499297081193098 Functional Gain - PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49177928 chr20:49177930 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_108484 0 0 1 0 2 PTPN1 chr20:49177990 5'GT 49177990 Upstream 61bp
chr1 46870761 46870761 1 + C A rs324420 46870760 + 46870740 46870780 41 GAGACTCAGCTGTCTCAGGCCCCAAGGCAGGGCCTGCTCTA GAGACTCAGCTGTCTCAGGCCACAAGGCAGGGCCTGCTCTA < 41bp 0.517621439447338 0.76725686046891 0.4309322 0.65544474 prediction 0.499270842043144 Functional Gain - FAAH ENSG00000117480 CDS Human protein_coding chr1:46870760 chr1:46870761 nonsynonymous SNV 0.965 0 22 hm5C_associated_SNPs_108486 1 0 1 0 2 FAAH chr1:46870686 3'AG 46870686 Downstream 76bp
chr1 46870761 46870761 1 + C A rs324420 46870760 + 46870740 46870780 41 GAGACTCAGCTGTCTCAGGCCCCAAGGCAGGGCCTGCTCTA GAGACTCAGCTGTCTCAGGCCACAAGGCAGGGCCTGCTCTA < 41bp 0.517621439447338 0.76725686046891 0.4309322 0.65544474 prediction 0.499270842043144 Functional Gain - FAAH ENSG00000117480 CDS Human protein_coding chr1:46870760 chr1:46870761 nonsynonymous SNV 0.965 0 22 hm5C_associated_SNPs_108486 1 0 1 0 2 FAAH chr1:46870820 5'GT 46870820 Upstream 60bp
chr9 130981392 130981392 1 + C G rs143834670 130981388 + 130981368 130981408 41 GGTCCCGGTGGGGGACCAACCTCCCGACATCGAGTTCCAGA GGTCCCGGTGGGGGACCAACCTCCGGACATCGAGTTCCAGA < 41bp 0.574420222705858 0.8240465587231 0.22819969 0.40392214 prediction 0.499252672034483 Functional Gain - DNM1 ENSG00000106976 CDS Human protein_coding chr9:130981388 chr9:130981392 synonymous SNV . 0 25 hm5C_associated_SNPs_108488 1 0 1 0 1 DNM1 chr9:130981328 3'AG 130981328 Downstream 65bp
chr22 35783086 35783086 1 + C T SKCM 35783085 + 35783065 35783105 41 TTCAAGCAGCTCTACCGCTCCCGCATGAACTCCCTGGAGAT TTCAAGCAGCTCTACCGCTCCTGCATGAACTCCCTGGAGAT < 41bp 0.541976990948249 0.79160041067471 0.117875636 0.14719218 prediction 0.499246839452921 Functional Gain - HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35783085 chr22:35783086 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_108489 0 0 1 0 1 HMOX1 chr22:35783169 5'GT 35783169 Upstream 84bp
chr17 37821714 37821714 1 + C G LUAD 37821713 + 37821693 37821733 41 TCTGACACTGTCCACACGGCCCGAGGAGGGGTGAGTGTGGG TCTGACACTGTCCACACGGCCGGAGGAGGGGTGAGTGTGGG < 41bp 0.443455013702488 0.749623143864838 0.103440166 0.79471636 prediction 0.499246287729676 Functional Gain - TCAP ENSG00000173991 CDS Human protein_coding chr17:37821713 chr17:37821714 synonymous SNV . 0 22 hm5C_associated_SNPs_108490 0 0 0 0 1 TCAP chr17:37821722 5'GT 37821722 Upstream 9bp
chr16 68844191 68844191 1 + C A BRCA 68844190 + 68844170 68844210 41 CCGATCAGAATGACAACAAGCCCGAATTCACCCAGGAGGTC CCGATCAGAATGACAACAAGCACGAATTCACCCAGGAGGTC < 41bp 0.530742920913054 0.780365288185779 0.29498485 0.44861478 prediction 0.49924473454545 Functional Gain - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68844190 chr16:68844191 nonsynonymous SNV 0.315 5 22 hm5C_associated_SNPs_108491 0 0 0 0 2 CDH1 chr16:68844100 3'AG 68844100 Downstream 92bp
chr16 68844191 68844191 1 + C A BRCA 68844190 + 68844170 68844210 41 CCGATCAGAATGACAACAAGCCCGAATTCACCCAGGAGGTC CCGATCAGAATGACAACAAGCACGAATTCACCCAGGAGGTC < 41bp 0.530742920913054 0.780365288185779 0.29498485 0.44861478 prediction 0.49924473454545 Functional Gain - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68844190 chr16:68844191 nonsynonymous SNV 0.315 5 22 hm5C_associated_SNPs_108491 0 0 0 0 2 CDH1 chr16:68844244 5'GT 68844244 Upstream 54bp
chr9 139973806 139973806 1 + C T UCEC 139973805 + 139973785 139973825 41 CAGCGAGATCAGTCCTGAGACCGCACAGCTACGTGCCTCCG CAGCGAGATCAGTCCTGAGACTGCACAGCTACGTGCCTCCG < 41bp 0.502846833639146 0.752468050192923 0.1658054 0.12998629 prediction 0.499242433107555 Functional Gain - UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139973805 chr9:139973806 synonymous SNV . 0 22 hm5C_associated_SNPs_108492 0 0 1 0 2 UAP1L1 chr9:139973708 3'AG 139973708 Downstream 99bp
chr9 139973806 139973806 1 + C T UCEC 139973805 + 139973785 139973825 41 CAGCGAGATCAGTCCTGAGACCGCACAGCTACGTGCCTCCG CAGCGAGATCAGTCCTGAGACTGCACAGCTACGTGCCTCCG < 41bp 0.502846833639146 0.752468050192923 0.1658054 0.12998629 prediction 0.499242433107555 Functional Gain - UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139973805 chr9:139973806 synonymous SNV . 0 22 hm5C_associated_SNPs_108492 0 0 1 0 2 UAP1L1 chr9:139973901 5'GT 139973901 Upstream 96bp
chr9 71851087 71851087 1 + C A PAAD 71851083 + 71851063 71851103 41 GTAGACACACTGTATGACGGCAAGCTGGGCAACTGGCTGGC GTAGACACACTGTATGACGGCAAGATGGGCAACTGGCTGGC < 41bp 0.337517249487237 0.749617889728333 0.28364348 0.33149207 prediction 0.499235779456667 Functional Gain - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71851083 chr9:71851087 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_108494 0 0 1 0 1 TJP2 chr9:71851154 5'GT 71851154 Upstream 68bp
chr3 49742579 49742579 1 + C T SKCM 49742578 + 49742558 49742598 41 ACCTCGGAGAAAGTGAAGGTCCGCACGCTGAGCGTGGAGCA ACCTCGGAGAAAGTGAAGGTCTGCACGCTGAGCGTGGAGCA < 41bp 0.519151278996124 0.768768843107463 0.20569652 0.32740873 prediction 0.499235128222679 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49742578 chr3:49742579 nonsynonymous SNV 0.947 3 22 hm5C_associated_SNPs_108495 0 0 1 0 2 RNF123 chr3:49742615 5'GT 49742615 Upstream 37bp
chr3 49742579 49742579 1 + C T SKCM 49742578 + 49742558 49742598 41 ACCTCGGAGAAAGTGAAGGTCCGCACGCTGAGCGTGGAGCA ACCTCGGAGAAAGTGAAGGTCTGCACGCTGAGCGTGGAGCA < 41bp 0.519151278996124 0.768768843107463 0.20569652 0.32740873 prediction 0.499235128222679 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49742578 chr3:49742579 nonsynonymous SNV 0.947 3 22 hm5C_associated_SNPs_108495 0 0 1 0 2 RNF123 chr3:49742619 5'GT 49742619 Upstream 41bp
chr4 164271488 164271488 1 + C A LUAD 164271484 + 164271464 164271504 41 TGCCACAGAGAATAATACTGCTGCCACTCGGAATTCTGATT TGCCACAGAGAATAATACTGCTGCAACTCGGAATTCTGATT < 41bp 0.347175465050056 0.749616243850752 0.053491533 0.07727784 prediction 0.499232487701504 Functional Gain - NPY5R ENSG00000164129 CDS Human protein_coding chr4:164271484 chr4:164271488 synonymous SNV . 0 25 hm5C_associated_SNPs_108496 0 0 0 0 1 NPY5R chr4:164271417 3'AG 164271417 Downstream 72bp
chr19 48244184 48244184 1 + C G rs200177048 48244183 + 48244163 48244203 41 CCAAGTTTCACTCGCTGAAGCCGAAGCTGCTAGAGGCACTG CCAAGTTTCACTCGCTGAAGCGGAAGCTGCTAGAGGCACTG < 41bp 0.435159902625388 0.749614648616762 0.22570005 0.41794965 prediction 0.499229297233525 Functional Gain - EHD2 ENSG00000024422 CDS Human protein_coding chr19:48244183 chr19:48244184 nonsynonymous SNV 0.955 2 22 hm5C_associated_SNPs_108497 0 0 0 0 1 EHD2 chr19:48244138 3'AG 48244138 Downstream 47bp
chr9 135930121 135930121 1 + T G LUSC 135930119 + 135930099 135930139 41 CCAGCCAGCTTGTCACCATGCATGACCTGAAGCAGGGCCTG CCAGCCAGCTTGTCACCATGCAGGACCTGAAGCAGGGCCTG < 41bp 0.642177860970083 0.891791767813345 0.2649619 0.71999025 prediction 0.499227813686524 Functional Gain - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135930119 chr9:135930121 nonsynonymous SNV 0.949 0 23 hm5C_associated_SNPs_108498 0 0 1 0 2 GTF3C5 chr9:135930099 3'AG 135930099 Downstream 23bp
chr9 135930121 135930121 1 + T G LUSC 135930119 + 135930099 135930139 41 CCAGCCAGCTTGTCACCATGCATGACCTGAAGCAGGGCCTG CCAGCCAGCTTGTCACCATGCAGGACCTGAAGCAGGGCCTG < 41bp 0.642177860970083 0.891791767813345 0.2649619 0.71999025 prediction 0.499227813686524 Functional Gain - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135930119 chr9:135930121 nonsynonymous SNV 0.949 0 23 hm5C_associated_SNPs_108498 0 0 1 0 2 GTF3C5 chr9:135930196 5'GT 135930196 Upstream 76bp
chr17 76201790 76201790 1 + T A GBM 76201786 + 76201766 76201806 41 GTGGGCCAGTTCGACTCCCCCGAATTCCACCGACAGTCCTG GTGGGCCAGTTCGACTCCCCCGAAATCCACCGACAGTCCTG < 41bp 0.435881438708391 0.749599776922574 0.1892668 0.33734986 prediction 0.499199553845148 Functional Gain - AFMID ENSG00000183077 CDS Human protein_coding chr17:76201786 chr17:76201790 nonsynonymous SNV 0.701 3 25 hm5C_associated_SNPs_108499 0 0 0 0 2 AFMID chr17:76201819 5'GT 76201819 Upstream 30bp
chr17 76201790 76201790 1 + T A GBM 76201786 + 76201766 76201806 41 GTGGGCCAGTTCGACTCCCCCGAATTCCACCGACAGTCCTG GTGGGCCAGTTCGACTCCCCCGAAATCCACCGACAGTCCTG < 41bp 0.435881438708391 0.749599776922574 0.1892668 0.33734986 prediction 0.499199553845148 Functional Gain - AFMID ENSG00000183077 CDS Human protein_coding chr17:76201786 chr17:76201790 nonsynonymous SNV 0.701 3 25 hm5C_associated_SNPs_108499 0 0 0 0 2 AFMID chr17:76201834 5'GT 76201834 Upstream 45bp
chr11 63668341 63668341 1 + C G rs533394471 63668340 + 63668320 63668360 41 ACTCCCTGACTACAAGGACCCCCGGCGGACAGGTGAGGCTG ACTCCCTGACTACAAGGACCCGCGGCGGACAGGTGAGGCTG < 41bp 0.432056861242385 0.749590980931332 0.8282329 0.8992524 prediction 0.499181961862664 Functional Gain - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63668340 chr11:63668341 synonymous SNV . 0 22 hm5C_associated_SNPs_108503 0 0 1 0 2 MARK2 chr11:63668252 3'AG 63668252 Downstream 90bp
chr11 63668341 63668341 1 + C G rs533394471 63668340 + 63668320 63668360 41 ACTCCCTGACTACAAGGACCCCCGGCGGACAGGTGAGGCTG ACTCCCTGACTACAAGGACCCGCGGCGGACAGGTGAGGCTG < 41bp 0.432056861242385 0.749590980931332 0.8282329 0.8992524 prediction 0.499181961862664 Functional Gain - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63668340 chr11:63668341 synonymous SNV . 0 22 hm5C_associated_SNPs_108503 0 0 1 0 2 MARK2 chr11:63668351 5'GT 63668351 Upstream 11bp
chr16 31230697 31230697 1 + C A rs115885262 31230696 + 31230676 31230716 41 GCACTGGAGGGCTCCTTGGACCGCGAGGCAGAGCGTGTACG GCACTGGAGGGCTCCTTGGACAGCGAGGCAGAGCGTGTACG < 41bp 0.489112681013322 0.749583617618119 0.115567 0.38804138 prediction 0.499167235236239 Functional Gain - TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31230696 chr16:31230697 nonsynonymous SNV 0.340 0 22 hm5C_associated_SNPs_108507 0 0 1 0 1 TRIM72 chr16:31230610 3'AG 31230610 Downstream 88bp
chr12 56494932 56494932 1 + T C rs77822103 56494930 + 56494910 56494950 41 GGGATGCCTGGCATCAGAGTCATCAGAGGGGCATGTAACAG GGGATGCCTGGCATCAGAGTCACCAGAGGGGCATGTAACAG < 41bp 0.468938635792801 0.749573505576731 0.7760447 0.59525305 prediction 0.499147011153462 Functional Gain - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56494930 chr12:56494932 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_108511 0 0 0 0 1 ERBB3 chr12:56494845 3'AG 56494845 Downstream 88bp
chrX 129318356 129318356 1 + T C UCEC 129318354 + 129318334 129318374 41 GCCGTGGTCTTCGTCTATGACGTCACCAAGATGACATCTTT GCCGTGGTCTTCGTCTATGACGCCACCAAGATGACATCTTT < 41bp 0.485957506771945 0.74956503224148 0.09527516 0.16550124 prediction 0.49913006448296 Functional Gain - RAB33A ENSG00000134594 CDS Human protein_coding chrX:129318354 chrX:129318356 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_108514 0 0 0 0 1 RAB33A chrX:129318259 3'AG 129318259 Downstream 98bp
chr20 43541349 43541349 1 + C A UCEC 43541345 + 43541325 43541365 41 ACTTTGAGATGCTCAAAGGCCAGCCTATTCGCATCATGTGG ACTTTGAGATGCTCAAAGGCCAGCATATTCGCATCATGTGG < 41bp 0.354422818788795 0.749562031568845 0.04885474 0.07953027 prediction 0.499124063137691 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43541345 chr20:43541349 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_108516 0 0 0 0 1 PABPC1L chr20:43541301 3'AG 43541301 Downstream 49bp
chr5 161495109 161495109 1 + C G LUSC 161495108 + 161495088 161495128 41 TGCTCCTGCTGTCGCTCTACCCTGGGTAAGATGTGCCCTTT TGCTCCTGCTGTCGCTCTACCGTGGGTAAGATGTGCCCTTT < 41bp 0.443993698083372 0.749553362375895 0.57707524 0.8941275 prediction 0.499106724751791 Functional Gain - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161495108 chr5:161495109 nonsynonymous SNV 0.982 0 22 hm5C_associated_SNPs_108517 0 0 0 0 1 GABRG2 chr5:161495112 5'GT 161495112 Upstream 4bp
chr7 128498142 128498142 1 + C A COAD 128498141 + 128498121 128498161 41 GTGACCAAGTCCTCCTCAAGCCGGGGCTCCAGCTACAGCTC GTGACCAAGTCCTCCTCAAGCAGGGGCTCCAGCTACAGCTC < 41bp 0.500656022469044 0.750206456225838 0.93705785 0.95147586 prediction 0.499100867513589 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128498141 chr7:128498142 synonymous SNV . 0 22 hm5C_associated_SNPs_108518 0 0 1 0 1 FLNC chr7:128498062 3'AG 128498062 Downstream 81bp
chr4 159791570 159791570 1 + T G DLBC 159791567 + 159791547 159791587 41 CTTGTGCTTCATGGGACCGGCAGTGATGAGAAGCTGAAGCA CTTGTGCTTCATGGGACCGGCAGGGATGAGAAGCTGAAGCA < 41bp 0.351816321358897 0.74954121843509 0.37952048 0.88355994 prediction 0.499082436870181 Functional Gain - FNIP2 ENSG00000052795 CDS Human protein_coding chr4:159791567 chr4:159791570 nonsynonymous SNV 0.973 2 24 hm5C_associated_SNPs_108519 0 0 1 0 1 FNIP2 chr4:159791621 5'GT 159791621 Upstream 52bp
chr11 71502830 71502830 1 + T A KIRC 71502826 + 71502806 71502846 41 GTGAAGCACCCGCCGTCAGTCAAGTATGCCCGGTGCTTTCT GTGAAGCACCCGCCGTCAGTCAAGAATGCCCGGTGCTTTCT < 41bp 0.446226422171963 0.749538380716402 0.37726772 0.715727 prediction 0.499076761432804 Functional Gain - FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502826 chr11:71502830 nonsynonymous SNV 0.849 2 25 hm5C_associated_SNPs_108520 0 0 0 0 3 FAM86C1 chr11:71502782 3'AG 71502782 Downstream 49bp
chr11 71502830 71502830 1 + T A KIRC 71502826 + 71502806 71502846 41 GTGAAGCACCCGCCGTCAGTCAAGTATGCCCGGTGCTTTCT GTGAAGCACCCGCCGTCAGTCAAGAATGCCCGGTGCTTTCT < 41bp 0.446226422171963 0.749538380716402 0.37726772 0.715727 prediction 0.499076761432804 Functional Gain - FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502826 chr11:71502830 nonsynonymous SNV 0.849 2 25 hm5C_associated_SNPs_108520 0 0 0 0 3 FAM86C1 chr11:71502785 3'AG 71502785 Downstream 46bp
chr11 71502830 71502830 1 + T A KIRC 71502826 + 71502806 71502846 41 GTGAAGCACCCGCCGTCAGTCAAGTATGCCCGGTGCTTTCT GTGAAGCACCCGCCGTCAGTCAAGAATGCCCGGTGCTTTCT < 41bp 0.446226422171963 0.749538380716402 0.37726772 0.715727 prediction 0.499076761432804 Functional Gain - FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502826 chr11:71502830 nonsynonymous SNV 0.849 2 25 hm5C_associated_SNPs_108520 0 0 0 0 3 FAM86C1 chr11:71502865 5'GT 71502865 Upstream 36bp
chr11 18631459 18631459 1 - A G UCEC 18631461 - 18631441 18631481 41 AGGACTTAGAGGAAATGAGACGTGAAGAAGAAGAAATGCAA AGGACTTAGAGGAAATGAGACGCGAAGAAGAAGAAATGCAA < 41bp 0.552577300592661 0.802114958662419 0.66958183 0.48627317 prediction 0.499075316139516 Functional Gain - SPTY2D1 ENSG00000179119 CDS Human protein_coding chr11:18631461 chr11:18631459 synonymous SNV . 0 23 hm5C_associated_SNPs_108521 0 0 1 0 1 SPTY2D1 chr11:18631501 3'AG 18631501 Downstream 43bp
chr7 73973279 73973279 1 + C T SKCM 73973278 + 73973258 73973298 41 CGTGATCATCGAGGGGCTGCCCCCAGGAATCCCGTTCCGAA CGTGATCATCGAGGGGCTGCCTCCAGGAATCCCGTTCCGAA < 41bp 0.57006013540034 0.819596094710741 0.12713072 0.9487842 prediction 0.499071918620803 Functional Gain - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73973278 chr7:73973279 synonymous SNV . 0 22 hm5C_associated_SNPs_108522 0 0 1 0 2 GTF2IRD1 chr7:73973191 3'AG 73973191 Downstream 89bp
chr7 73973279 73973279 1 + C T SKCM 73973278 + 73973258 73973298 41 CGTGATCATCGAGGGGCTGCCCCCAGGAATCCCGTTCCGAA CGTGATCATCGAGGGGCTGCCTCCAGGAATCCCGTTCCGAA < 41bp 0.57006013540034 0.819596094710741 0.12713072 0.9487842 prediction 0.499071918620803 Functional Gain - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73973278 chr7:73973279 synonymous SNV . 0 22 hm5C_associated_SNPs_108522 0 0 1 0 2 GTF2IRD1 chr7:73973374 5'GT 73973374 Upstream 96bp
chr1 156897567 156897567 1 + C T BLCA 156897566 + 156897546 156897586 41 CTGCTCTGGCTGTCCCTGGCCCACAACCGCATCCAGGACAA CTGCTCTGGCTGTCCCTGGCCTACAACCGCATCCAGGACAA < 41bp 0.494377177296862 0.749519878291395 0.07172492 0.45252758 prediction 0.499039756582789 Functional Gain - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156897566 chr1:156897567 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_108525 0 0 0 0 2 LRRC71 chr1:156897525 3'AG 156897525 Downstream 43bp
chr1 156897567 156897567 1 + C T BLCA 156897566 + 156897546 156897586 41 CTGCTCTGGCTGTCCCTGGCCCACAACCGCATCCAGGACAA CTGCTCTGGCTGTCCCTGGCCTACAACCGCATCCAGGACAA < 41bp 0.494377177296862 0.749519878291395 0.07172492 0.45252758 prediction 0.499039756582789 Functional Gain - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156897566 chr1:156897567 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_108525 0 0 0 0 2 LRRC71 chr1:156897608 5'GT 156897608 Upstream 42bp
chr11 113857293 113857293 1 + C A STAD 113857289 + 113857269 113857309 41 TGTGGTCAGCCTGCTACTGCCCAGCATCTTCCTCATGGTCA TGTGGTCAGCCTGCTACTGCCCAGAATCTTCCTCATGGTCA < 41bp 0.34261102737491 0.749512612569909 0.01580593 0.04369828 prediction 0.499025225139818 Functional Gain - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113857289 chr11:113857293 nonsynonymous SNV 0.996 5 25 hm5C_associated_SNPs_108528 0 0 0 0 1 HTR3A chr11:113857240 3'AG 113857240 Downstream 54bp
chr17 21201787 21201787 1 + C A LUAD 21201786 + 21201766 21201806 41 TCCAAGCCACCCGCACCCAACCCCACGTGAGTCTGCCTCAG TCCAAGCCACCCGCACCCAACACCACGTGAGTCTGCCTCAG < 41bp 0.49493096137029 0.749506723092991 0.11430231 0.16146028 prediction 0.499013446185983 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21201786 chr17:21201787 nonsynonymous SNV 0.990 0 22 hm5C_associated_SNPs_108529 0 0 0 0 2 MAP2K3 chr17:21201725 3'AG 21201725 Downstream 63bp
chr17 21201787 21201787 1 + C A LUAD 21201786 + 21201766 21201806 41 TCCAAGCCACCCGCACCCAACCCCACGTGAGTCTGCCTCAG TCCAAGCCACCCGCACCCAACACCACGTGAGTCTGCCTCAG < 41bp 0.49493096137029 0.749506723092991 0.11430231 0.16146028 prediction 0.499013446185983 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21201786 chr17:21201787 nonsynonymous SNV 0.990 0 22 hm5C_associated_SNPs_108529 0 0 0 0 2 MAP2K3 chr17:21201791 5'GT 21201791 Upstream 5bp
chrX 128926328 128926328 1 + C A LIHC 128926327 + 128926307 128926347 41 GTGAGCTCTGCAGCCCCAGCCCAGGTTCTGGCAGCTTCGGG GTGAGCTCTGCAGCCCCAGCCAAGGTTCTGGCAGCTTCGGG < 41bp 0.527895196730041 0.777392739190087 0.24648175 0.46934092 prediction 0.498995084920091 Functional Gain - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128926327 chrX:128926328 nonsynonymous SNV 0.709 0 22 hm5C_associated_SNPs_108530 0 0 0 0 1 SASH3 chrX:128926304 3'AG 128926304 Downstream 25bp
chr11 2415337 2415337 1 + T G STAD 2415335 + 2415315 2415355 41 TCCCCGCAAGGCATCTACATCCTCATCGCTGTGGGCGCTGT TCCCCGCAAGGCATCTACATCCGCATCGCTGTGGGCGCTGT < 41bp 0.409567900101136 0.749491700054937 0.0693582 0.1922718 prediction 0.498983400109874 Functional Gain - CD81 ENSG00000110651 CDS Human protein_coding chr11:2415335 chr11:2415337 nonsynonymous SNV 0.967 5 23 hm5C_associated_SNPs_108532 0 0 1 0 2 CD81 chr11:2415325 3'AG 2415325 Downstream 13bp
chr11 2415337 2415337 1 + T G STAD 2415335 + 2415315 2415355 41 TCCCCGCAAGGCATCTACATCCTCATCGCTGTGGGCGCTGT TCCCCGCAAGGCATCTACATCCGCATCGCTGTGGGCGCTGT < 41bp 0.409567900101136 0.749491700054937 0.0693582 0.1922718 prediction 0.498983400109874 Functional Gain - CD81 ENSG00000110651 CDS Human protein_coding chr11:2415335 chr11:2415337 nonsynonymous SNV 0.967 5 23 hm5C_associated_SNPs_108532 0 0 1 0 2 CD81 chr11:2415422 5'GT 2415422 Upstream 86bp
chr1 60287594 60287594 1 + T C LIHC 60287592 + 60287572 60287612 41 CAGCTGACTAGTGGAGTTGCCATGGCACAAGTTCTTCATCA CAGCTGACTAGTGGAGTTGCCACGGCACAAGTTCTTCATCA < 41bp 0.477345641742976 0.749482952843433 0.42379752 0.5021471 prediction 0.498965905686866 Functional Gain - HOOK1 ENSG00000134709 CDS Human protein_coding chr1:60287592 chr1:60287594 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_108534 0 0 1 0 2 HOOK1 chr1:60287530 3'AG 60287530 Downstream 65bp
chr1 60287594 60287594 1 + T C LIHC 60287592 + 60287572 60287612 41 CAGCTGACTAGTGGAGTTGCCATGGCACAAGTTCTTCATCA CAGCTGACTAGTGGAGTTGCCACGGCACAAGTTCTTCATCA < 41bp 0.477345641742976 0.749482952843433 0.42379752 0.5021471 prediction 0.498965905686866 Functional Gain - HOOK1 ENSG00000134709 CDS Human protein_coding chr1:60287592 chr1:60287594 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_108534 0 0 1 0 2 HOOK1 chr1:60287615 5'GT 60287615 Upstream 22bp
chr7 141765177 141765177 1 + C A LUAD 141765176 + 141765156 141765196 41 ACAGCGAGGGGTCGTCATCACCCGCTCCACATTTCCCTCTT ACAGCGAGGGGTCGTCATCACACGCTCCACATTTCCCTCTT < 41bp 0.504316283921054 0.753796933634348 0.1253477 0.2255016 prediction 0.498961299426588 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141765176 chr7:141765177 synonymous SNV . 0 22 hm5C_associated_SNPs_108536 0 0 0 0 2 MGAM chr7:141765135 3'AG 141765135 Downstream 43bp
chr7 141765177 141765177 1 + C A LUAD 141765176 + 141765156 141765196 41 ACAGCGAGGGGTCGTCATCACCCGCTCCACATTTCCCTCTT ACAGCGAGGGGTCGTCATCACACGCTCCACATTTCCCTCTT < 41bp 0.504316283921054 0.753796933634348 0.1253477 0.2255016 prediction 0.498961299426588 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141765176 chr7:141765177 synonymous SNV . 0 22 hm5C_associated_SNPs_108536 0 0 0 0 2 MGAM chr7:141765268 5'GT 141765268 Upstream 92bp
chr2 234858695 234858695 1 + C A LUSC 234858694 + 234858674 234858714 41 CTGGTGGAGGTGGAGGATGCCCTGACATCTTCTGCCGTCAA CTGGTGGAGGTGGAGGATGCCATGACATCTTCTGCCGTCAA < 41bp 0.515281576939312 0.76475258297055 0.22818217 0.37473503 prediction 0.498942012062475 Functional Gain - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234858694 chr2:234858695 nonsynonymous SNV 0.005 1 22 hm5C_associated_SNPs_108539 0 0 0 0 1 TRPM8 chr2:234858790 5'GT 234858790 Upstream 96bp
chr14 57075882 57075882 1 + C T SKCM 57075881 + 57075861 57075901 41 ACTTCTCTGCTGGTTTGCTGCCCTATGTCCACCTTCCCATC ACTTCTCTGCTGGTTTGCTGCTCTATGTCCACCTTCCCATC < 41bp 0.551108399539401 0.80057053348739 0.5177076 0.9413836 prediction 0.498924267895978 Functional Gain - TMEM260 ENSG00000070269 CDS Human protein_coding chr14:57075881 chr14:57075882 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_108541 0 0 0 0 1 TMEM260 chr14:57075824 3'AG 57075824 Downstream 59bp
chr1 158225978 158225978 1 + T C UCEC 158225976 + 158225956 158225996 41 AAGTGCTCAATCAGAATCAGCATGAAAATGACATAACACAC AAGTGCTCAATCAGAATCAGCACGAAAATGACATAACACAC < 41bp 0.530004908450523 0.77946104147899 0.03372076 0.037108034 prediction 0.498912266056933 Functional Gain - CD1A ENSG00000158477 CDS Human protein_coding chr1:158225976 chr1:158225978 synonymous SNV . 0 23 hm5C_associated_SNPs_108543 0 0 0 0 1 CD1A chr1:158226072 5'GT 158226072 Upstream 95bp
chr6 13601090 13601090 1 + C G OV 13601089 + 13601069 13601109 41 GGCACTTCCTCTGTGGTGTACCCAGCAGCCATGTTTGCCCC GGCACTTCCTCTGTGGTGTACGCAGCAGCCATGTTTGCCCC < 41bp 0.426372684165042 0.749455831995486 0.14402926 0.34552252 prediction 0.498911663990972 Functional Gain - SIRT5 ENSG00000124523 CDS Human protein_coding chr6:13601089 chr6:13601090 nonsynonymous SNV 0.983 4 22 hm5C_associated_SNPs_108544 0 0 1 0 2 SIRT5 chr6:13601066 3'AG 13601066 Downstream 25bp
chr6 13601090 13601090 1 + C G OV 13601089 + 13601069 13601109 41 GGCACTTCCTCTGTGGTGTACCCAGCAGCCATGTTTGCCCC GGCACTTCCTCTGTGGTGTACGCAGCAGCCATGTTTGCCCC < 41bp 0.426372684165042 0.749455831995486 0.14402926 0.34552252 prediction 0.498911663990972 Functional Gain - SIRT5 ENSG00000124523 CDS Human protein_coding chr6:13601089 chr6:13601090 nonsynonymous SNV 0.983 4 22 hm5C_associated_SNPs_108544 0 0 1 0 2 SIRT5 chr6:13601181 5'GT 13601181 Upstream 92bp
chr12 112924348 112924348 1 + C T SKCM 112924347 + 112924327 112924367 41 GACCACGGCGTGCCCAGCGACCCTGGGGGCGTGCTGGACTT GACCACGGCGTGCCCAGCGACTCTGGGGGCGTGCTGGACTT < 41bp 0.485439935408998 0.749443713871139 0.28586513 0.29787585 prediction 0.498887427742278 Functional Gain - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112924347 chr12:112924348 nonsynonymous SNV 0.950 5 22 hm5C_associated_SNPs_108547 0 0 1 0 2 PTPN11 chr12:112924279 3'AG 112924279 Downstream 70bp
chr12 112924348 112924348 1 + C T SKCM 112924347 + 112924327 112924367 41 GACCACGGCGTGCCCAGCGACCCTGGGGGCGTGCTGGACTT GACCACGGCGTGCCCAGCGACTCTGGGGGCGTGCTGGACTT < 41bp 0.485439935408998 0.749443713871139 0.28586513 0.29787585 prediction 0.498887427742278 Functional Gain - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112924347 chr12:112924348 nonsynonymous SNV 0.950 5 22 hm5C_associated_SNPs_108547 0 0 1 0 2 PTPN11 chr12:112924433 5'GT 112924433 Upstream 86bp
chr19 46181212 46181212 1 + C A COAD 46181208 + 46181188 46181228 41 ATTCTTGGCATTCTCCTGTCCAAGCTGAGGACACGGCAAAT ATTCTTGGCATTCTCCTGTCCAAGATGAGGACACGGCAAAT < 41bp 0.336905238960991 0.749442209878719 0.2740019 0.3233263 prediction 0.498884419757438 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46181208 chr19:46181212 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_108548 0 0 1 0 2 GIPR chr19:46181164 3'AG 46181164 Downstream 49bp
chr19 46181212 46181212 1 + C A COAD 46181208 + 46181188 46181228 41 ATTCTTGGCATTCTCCTGTCCAAGCTGAGGACACGGCAAAT ATTCTTGGCATTCTCCTGTCCAAGATGAGGACACGGCAAAT < 41bp 0.336905238960991 0.749442209878719 0.2740019 0.3233263 prediction 0.498884419757438 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46181208 chr19:46181212 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_108548 0 0 1 0 2 GIPR chr19:46181252 5'GT 46181252 Upstream 41bp
chr1 9781865 9781865 1 + C A STAD 9781864 + 9781844 9781884 41 GCCCTGCGCTTCGGCCTCATCCTGGAGGCCTACTGCAGGGG GCCCTGCGCTTCGGCCTCATCATGGAGGCCTACTGCAGGGG < 41bp 0.512262399612979 0.76167835940677 0.1976772 0.62035227 prediction 0.498831919587581 Functional Gain - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9781864 chr1:9781865 nonsynonymous SNV 0.992 0 22 hm5C_associated_SNPs_108552 0 0 0 0 2 PIK3CD chr1:9781819 3'AG 9781819 Downstream 47bp
chr1 9781865 9781865 1 + C A STAD 9781864 + 9781844 9781884 41 GCCCTGCGCTTCGGCCTCATCCTGGAGGCCTACTGCAGGGG GCCCTGCGCTTCGGCCTCATCATGGAGGCCTACTGCAGGGG < 41bp 0.512262399612979 0.76167835940677 0.1976772 0.62035227 prediction 0.498831919587581 Functional Gain - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9781864 chr1:9781865 nonsynonymous SNV 0.992 0 22 hm5C_associated_SNPs_108552 0 0 0 0 2 PIK3CD chr1:9781918 5'GT 9781918 Upstream 54bp
chr12 110783812 110783812 1 + C G rs144955024 110783811 + 110783791 110783831 41 CTCCTTGCTCTGCAGCTTGTCCGAAAACCAGTCCTTGCTGA CTCCTTGCTCTGCAGCTTGTCGGAAAACCAGTCCTTGCTGA < 41bp 0.430737221681753 0.749409053033599 0.03640288 0.5201033 prediction 0.498818106067197 Functional Gain - ATP2A2 ENSG00000174437 CDS Human protein_coding chr12:110783811 chr12:110783812 synonymous SNV . 0 22 hm5C_associated_SNPs_108553 0 0 1 0 1 ATP2A2 chr12:110783806 3'AG 110783806 Downstream 7bp
chr1 46158923 46158923 1 + T A SKCM 46158919 + 46158899 46158939 41 GGGACTAAGAACCAGCAGAACAGATATACTTTCTCTCAAGA GGGACTAAGAACCAGCAGAACAGAAATACTTTCTCTCAAGA < 41bp 0.445114491623554 0.749405465682844 0.7334828 0.6193247 prediction 0.498810931365689 Functional Gain - TMEM69 ENSG00000159596 CDS Human protein_coding chr1:46158919 chr1:46158923 nonsynonymous SNV 0.010 0 25 hm5C_associated_SNPs_108555 0 0 1 0 1 TMEM69 chr1:46158876 3'AG 46158876 Downstream 48bp
chr14 23846557 23846557 1 + C T SKCM 23846556 + 23846536 23846576 41 GACAAGGCCTTCCTCACCTCCCACAAGGGCATCCTGCTGGA GACAAGGCCTTCCTCACCTCCTACAAGGGCATCCTGCTGGA < 41bp 0.512473595178018 0.761876594503963 0.14412293 0.9218287 prediction 0.498805998651889 Functional Gain - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23846556 chr14:23846557 nonsynonymous SNV 0.996 0 22 hm5C_associated_SNPs_108556 0 0 0 1 1 CMTM5 chr14:23846586 5'GT 23846586 Upstream 30bp
chr1 10659338 10659338 1 + C G rs41274482 10659334 + 10659314 10659354 41 TGATATGGCCTTCCAGCAGTCGGGCACTGCTGCCGATGAGC TGATATGGCCTTCCAGCAGTCGGGGACTGCTGCCGATGAGC < 41bp 0.583535297107402 0.832933290767987 0.85385 0.93982863 prediction 0.498795987321169 Functional Gain - PEX14 ENSG00000142655 CDS Human protein_coding chr1:10659334 chr1:10659338 synonymous SNV . 0 25 hm5C_associated_SNPs_108557 2 0 1 0 2 PEX14 chr1:10659295 3'AG 10659295 Downstream 44bp
chr1 10659338 10659338 1 + C G rs41274482 10659334 + 10659314 10659354 41 TGATATGGCCTTCCAGCAGTCGGGCACTGCTGCCGATGAGC TGATATGGCCTTCCAGCAGTCGGGGACTGCTGCCGATGAGC < 41bp 0.583535297107402 0.832933290767987 0.85385 0.93982863 prediction 0.498795987321169 Functional Gain - PEX14 ENSG00000142655 CDS Human protein_coding chr1:10659334 chr1:10659338 synonymous SNV . 0 25 hm5C_associated_SNPs_108557 2 0 1 0 2 PEX14 chr1:10659423 5'GT 10659423 Upstream 86bp
chr17 61620971 61620971 1 + C A UCEC 61620967 + 61620947 61620987 41 GTCTCCACTCATCCCCCCGACAGGCTCCTGGCAGCCAAGAC GTCTCCACTCATCCCCCCGACAGGATCCTGGCAGCCAAGAC < 41bp 0.325834163865651 0.749397325140274 0.1488733 0.25601625 prediction 0.498794650280549 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61620967 chr17:61620971 nonsynonymous SNV 0.702 1 25 hm5C_associated_SNPs_108558 0 0 0 0 2 KCNH6 chr17:61620937 3'AG 61620937 Downstream 35bp
chr17 61620971 61620971 1 + C A UCEC 61620967 + 61620947 61620987 41 GTCTCCACTCATCCCCCCGACAGGCTCCTGGCAGCCAAGAC GTCTCCACTCATCCCCCCGACAGGATCCTGGCAGCCAAGAC < 41bp 0.325834163865651 0.749397325140274 0.1488733 0.25601625 prediction 0.498794650280549 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61620967 chr17:61620971 nonsynonymous SNV 0.702 1 25 hm5C_associated_SNPs_108558 0 0 0 0 2 KCNH6 chr17:61621021 5'GT 61621021 Upstream 51bp
chr13 111927942 111927942 1 + C T UCEC 111927941 + 111927921 111927961 41 CAGATCCTGACGGAAGCCATCCGGAACTGGGAGGGCGATGA CAGATCCTGACGGAAGCCATCTGGAACTGGGAGGGCGATGA < 41bp 0.492360462134194 0.749394932306077 0.43894234 0.3252178 prediction 0.498789864612153 Functional Gain - ARHGEF7 ENSG00000102606 CDS Human protein_coding chr13:111927941 chr13:111927942 nonsynonymous SNV 0.198 4 22 hm5C_associated_SNPs_108559 0 0 1 0 2 ARHGEF7 chr13:111927879 3'AG 111927879 Downstream 64bp
chr13 111927942 111927942 1 + C T UCEC 111927941 + 111927921 111927961 41 CAGATCCTGACGGAAGCCATCCGGAACTGGGAGGGCGATGA CAGATCCTGACGGAAGCCATCTGGAACTGGGAGGGCGATGA < 41bp 0.492360462134194 0.749394932306077 0.43894234 0.3252178 prediction 0.498789864612153 Functional Gain - ARHGEF7 ENSG00000102606 CDS Human protein_coding chr13:111927941 chr13:111927942 nonsynonymous SNV 0.198 4 22 hm5C_associated_SNPs_108559 0 0 1 0 2 ARHGEF7 chr13:111928025 5'GT 111928025 Upstream 84bp
chr2 47690292 47690292 1 + T C LUAD 47690290 + 47690270 47690310 41 TAATAAGTGCAGCCAGAGATCTTGGTAAGAATGGGTCATTG TAATAAGTGCAGCCAGAGATCTCGGTAAGAATGGGTCATTG < 41bp 0.547988351595601 0.797366888204873 0.1767523 0.39546305 prediction 0.498757073218544 Functional Gain - MSH2 ENSG00000095002 CDS Human protein_coding chr2:47690290 chr2:47690292 synonymous SNV . 0 23 hm5C_associated_SNPs_108562 0 0 1 3 1 MSH2 chr2:47690293 5'GT 47690293 Upstream 2bp
chr1 111435051 111435051 1 + C A COAD 111435047 + 111435027 111435067 41 GTGCTCTTCCATAACCTCCCCTCCCTCACGCTGGGCAATGT GTGCTCTTCCATAACCTCCCCTCCATCACGCTGGGCAATGT < 41bp 0.308392875627514 0.749374743233512 0.070745796 0.9149546 prediction 0.498749486467025 Functional Gain - CD53 ENSG00000143119 CDS Human protein_coding chr1:111435047 chr1:111435051 nonsynonymous SNV 0.570 2 25 hm5C_associated_SNPs_108563 0 0 1 0 1 CD53 chr1:111434967 3'AG 111434967 Downstream 85bp
chr17 33326452 33326452 1 + T C COAD 33326450 + 33326430 33326470 41 CGCCTGCAGAATGAACTAGACATGGTGAAGATCAGCAAGGT CGCCTGCAGAATGAACTAGACACGGTGAAGATCAGCAAGGT < 41bp 0.547532902018699 0.796903845280514 0.27100956 0.42649233 prediction 0.498741886523628 Functional Gain - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33326450 chr17:33326452 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_108564 0 0 1 0 1 LIG3 chr17:33326468 5'GT 33326468 Upstream 17bp
chr9 130428462 130428462 1 + C G rs553892771 130428458 + 130428438 130428478 41 CCCCCAGGGCCCAGACAAGGCACGCTCCCAGCTCCTGATCC CCCCCAGGGCCCAGACAAGGCACGGTCCCAGCTCCTGATCC < 41bp 0.594447270462734 0.843814982247592 0.04448256 0.25230777 prediction 0.498735423569716 Functional Gain - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130428458 chr9:130428462 synonymous SNV . 0 25 hm5C_associated_SNPs_108565 1 0 0 0 1 STXBP1 chr9:130428445 3'AG 130428445 Downstream 18bp
chr1 24663602 24663602 1 + C T HNSC 24663601 + 24663581 24663621 41 CAGATATCCTGAAAACCTCCCCGGAACCCCCATGTCCAGAG CAGATATCCTGAAAACCTCCCTGGAACCCCCATGTCCAGAG < 41bp 0.513763501856715 0.763130639799321 0.12139508 0.1369721 prediction 0.498734275885211 Functional Gain - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24663601 chr1:24663602 nonsynonymous SNV 0.794 0 22 hm5C_associated_SNPs_108566 0 0 0 0 2 GRHL3 chr1:24663568 3'AG 24663568 Downstream 35bp
chr1 24663602 24663602 1 + C T HNSC 24663601 + 24663581 24663621 41 CAGATATCCTGAAAACCTCCCCGGAACCCCCATGTCCAGAG CAGATATCCTGAAAACCTCCCTGGAACCCCCATGTCCAGAG < 41bp 0.513763501856715 0.763130639799321 0.12139508 0.1369721 prediction 0.498734275885211 Functional Gain - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24663601 chr1:24663602 nonsynonymous SNV 0.794 0 22 hm5C_associated_SNPs_108566 0 0 0 0 2 GRHL3 chr1:24663641 5'GT 24663641 Upstream 40bp
chr12 58121198 58121198 1 - G T LUAD 58121199 - 58121179 58121219 41 ATTGGCAACGACACGGCCAACCGCGTGTGGGAAAGCGACAC ATTGGCAACGACACGGCCAACAGCGTGTGGGAAAGCGACAC < 41bp 0.502272939983406 0.751639811279686 0.08470392 0.08460662 prediction 0.49873374259256 Functional Gain - AGAP2 ENSG00000135439;ENSG00000255737 CDS Human other chr12:58121199 chr12:58121198 nonsynonymous SNV 0.994 0 22 hm5C_associated_SNPs_108567 0 0 1 0 1 AGAP2 chr12:58121143 5'GT 58121143 Upstream 56bp
chr2 73478496 73478496 1 + T A LAML 73478492 + 73478472 73478512 41 CCTTGGAGATTATCCCACGCCAGCTGTGTGACAATGCTGGC CCTTGGAGATTATCCCACGCCAGCAGTGTGACAATGCTGGC < 41bp 0.629306959595703 0.878666777552623 0.22849086 0.1227777 prediction 0.49871963591384 Functional Gain - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73478492 chr2:73478496 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_108570 0 0 1 0 1 CCT7 chr2:73478560 5'GT 73478560 Upstream 65bp
chr19 55593945 55593945 1 + C A UCEC 55593941 + 55593921 55593961 41 CGTGAAAACGAGCTCTGGACCTCGCTGGGGGACTCGTGGAC CGTGAAAACGAGCTCTGGACCTCGATGGGGGACTCGTGGAC < 41bp 0.6782928129583 0.927652270327687 0.09268671 0.8487127 prediction 0.498718914738775 Functional Gain - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55593941 chr19:55593945 nonsynonymous SNV 0.936 3 25 hm5C_associated_SNPs_108571 0 0 0 0 1 EPS8L1 chr19:55593970 5'GT 55593970 Upstream 26bp
chr10 26581402 26581402 1 + C A LUAD 26581401 + 26581381 26581421 41 TTCTCTTACCTAGGGGACTACCGGGTTTGAAGCGCATGTTG TTCTCTTACCTAGGGGACTACAGGGTTTGAAGCGCATGTTG < 41bp 0.520236203650026 0.769581301110401 0.90387356 0.86614656 prediction 0.498690194920749 Functional Gain - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26581401 chr10:26581402 synonymous SNV . 0 22 hm5C_associated_SNPs_108572 0 0 0 0 2 GAD2 chr10:26581394 3'AG 26581394 Downstream 9bp
chr10 26581402 26581402 1 + C A LUAD 26581401 + 26581381 26581421 41 TTCTCTTACCTAGGGGACTACCGGGTTTGAAGCGCATGTTG TTCTCTTACCTAGGGGACTACAGGGTTTGAAGCGCATGTTG < 41bp 0.520236203650026 0.769581301110401 0.90387356 0.86614656 prediction 0.498690194920749 Functional Gain - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26581401 chr10:26581402 synonymous SNV . 0 22 hm5C_associated_SNPs_108572 0 0 0 0 2 GAD2 chr10:26581501 5'GT 26581501 Upstream 100bp
chr21 47542060 47542060 1 + C G rs112197239 47542059 + 47542039 47542079 41 TGGATTCAGCTACCCAGGACCCCGAGGAGCACCCGTGAGTC TGGATTCAGCTACCCAGGACCGCGAGGAGCACCCGTGAGTC < 41bp 0.613056919647533 0.862399561851948 0.263722 0.627656 prediction 0.498685284408831 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47542059 chr21:47542060 synonymous SNV . 0 22 hm5C_associated_SNPs_108573 3 0 0 0 2 COL6A2 chr21:47542022 3'AG 47542022 Downstream 39bp
chr21 47542060 47542060 1 + C G rs112197239 47542059 + 47542039 47542079 41 TGGATTCAGCTACCCAGGACCCCGAGGAGCACCCGTGAGTC TGGATTCAGCTACCCAGGACCGCGAGGAGCACCCGTGAGTC < 41bp 0.613056919647533 0.862399561851948 0.263722 0.627656 prediction 0.498685284408831 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47542059 chr21:47542060 synonymous SNV . 0 22 hm5C_associated_SNPs_108573 3 0 0 0 2 COL6A2 chr21:47542072 5'GT 47542072 Upstream 13bp
chr16 8829607 8829607 1 + T G PAAD 8829604 + 8829584 8829624 41 CCCTCAAGGGGTCATGGCCTCCATGTTGCTCGCCCAGCGCC CCCTCAAGGGGTCATGGCCTCCAGGTTGCTCGCCCAGCGCC < 41bp 0.346054357743824 0.749342375624814 0.16517612 0.8809441 prediction 0.498684751249628 Functional Gain - ABAT ENSG00000183044 CDS Human protein_coding chr16:8829604 chr16:8829607 nonsynonymous SNV 0.562 0 24 hm5C_associated_SNPs_108574 0 0 1 0 1 ABAT chr16:8829666 5'GT 8829666 Upstream 60bp
chr1 203040874 203040874 1 + C T STAD 203040873 + 203040853 203040893 41 CTGTTGGCCTTGGGCACAGACCGGAAGCTGGATGACGTGAG CTGTTGGCCTTGGGCACAGACTGGAAGCTGGATGACGTGAG < 41bp 0.510493400486786 0.759833251756388 0.7147807 0.6018691 prediction 0.498679702539204 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203040873 chr1:203040874 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_108575 0 0 1 0 2 PPFIA4 chr1:203040820 3'AG 203040820 Downstream 55bp
chr1 203040874 203040874 1 + C T STAD 203040873 + 203040853 203040893 41 CTGTTGGCCTTGGGCACAGACCGGAAGCTGGATGACGTGAG CTGTTGGCCTTGGGCACAGACTGGAAGCTGGATGACGTGAG < 41bp 0.510493400486786 0.759833251756388 0.7147807 0.6018691 prediction 0.498679702539204 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203040873 chr1:203040874 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_108575 0 0 1 0 2 PPFIA4 chr1:203040888 5'GT 203040888 Upstream 15bp
chr5 156816275 156816275 1 + C T LIHC 156816274 + 156816254 156816294 41 CTGTCCATGTTCGAGGTCATCCTGACCCGCATTCGGAGCTA CTGTCCATGTTCGAGGTCATCTTGACCCGCATTCGGAGCTA < 41bp 0.510495415590829 0.759806277971976 0.036866963 0.12780622 prediction 0.498621724762294 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816274 chr5:156816275 synonymous SNV . 0 22 hm5C_associated_SNPs_108578 0 0 1 0 1 CYFIP2 chr5:156816197 3'AG 156816197 Downstream 79bp
chr16 31422758 31422758 1 + C A LUAD 31422757 + 31422737 31422777 41 ATAGACGTGGCCATTGGGGCCCCGGGAGAGCAGGAGAACCG ATAGACGTGGCCATTGGGGCCACGGGAGAGCAGGAGAACCG < 41bp 0.527433808221512 0.776744481101094 0.37513182 0.7113266 prediction 0.498621345759163 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422757 chr16:31422758 nonsynonymous SNV 0.018 3 22 hm5C_associated_SNPs_108579 0 0 0 0 1 ITGAD chr16:31422838 5'GT 31422838 Upstream 81bp
chr10 3189817 3189817 1 - G T LUSC 3189818 - 3189798 3189838 41 TACGCATCCATCAGGGCAGGCCGGACCCTCACGCCCGCAGG TACGCATCCATCAGGGCAGGCAGGACCCTCACGCCCGCAGG < 41bp 0.522881224364259 0.772190189311325 0.5295442 0.81161517 prediction 0.498617929894132 Functional Gain - PITRM1 ENSG00000107959 CDS Human protein_coding chr10:3189818 chr10:3189817 synonymous SNV . 0 22 hm5C_associated_SNPs_108580 0 0 1 0 1 PITRM1 chr10:3189764 5'GT 3189764 Upstream 54bp
chr14 77236309 77236309 1 + C T SKCM 77236308 + 77236288 77236328 41 CTCTTTCTCTGTCCCCAGATCCCCATACCGAGTGTGCCTAC CTCTTTCTCTGTCCCCAGATCTCCATACCGAGTGTGCCTAC < 41bp 0.475823999876117 0.749304549664695 0.29266387 0.95837915 prediction 0.498609099329389 Functional Gain - VASH1 ENSG00000071246 CDS Human protein_coding chr14:77236308 chr14:77236309 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_108581 0 0 1 0 2 VASH1 chr14:77236306 3'AG 77236306 Downstream 4bp
chr14 77236309 77236309 1 + C T SKCM 77236308 + 77236288 77236328 41 CTCTTTCTCTGTCCCCAGATCCCCATACCGAGTGTGCCTAC CTCTTTCTCTGTCCCCAGATCTCCATACCGAGTGTGCCTAC < 41bp 0.475823999876117 0.749304549664695 0.29266387 0.95837915 prediction 0.498609099329389 Functional Gain - VASH1 ENSG00000071246 CDS Human protein_coding chr14:77236308 chr14:77236309 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_108581 0 0 1 0 2 VASH1 chr14:77236394 5'GT 77236394 Upstream 86bp
chr5 139216769 139216769 1 + T C LUSC 139216767 + 139216747 139216787 41 CCCCAGCGCCCCGTGGGAGGCGTGGCTGGAAGAAATTCTAC CCCCAGCGCCCCGTGGGAGGCGCGGCTGGAAGAAATTCTAC < 41bp 0.527103964082901 0.776406524351287 0.8173169 0.81024355 prediction 0.498605120536773 Functional Gain - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139216767 chr5:139216769 synonymous SNV . 0 23 hm5C_associated_SNPs_108583 0 0 0 0 2 PSD2 chr5:139216753 3'AG 139216753 Downstream 17bp
chr5 139216769 139216769 1 + T C LUSC 139216767 + 139216747 139216787 41 CCCCAGCGCCCCGTGGGAGGCGTGGCTGGAAGAAATTCTAC CCCCAGCGCCCCGTGGGAGGCGCGGCTGGAAGAAATTCTAC < 41bp 0.527103964082901 0.776406524351287 0.8173169 0.81024355 prediction 0.498605120536773 Functional Gain - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139216767 chr5:139216769 synonymous SNV . 0 23 hm5C_associated_SNPs_108583 0 0 0 0 2 PSD2 chr5:139216823 5'GT 139216823 Upstream 55bp
chr16 85840359 85840359 1 + C A THCA 85840355 + 85840335 85840375 41 ACACCGTAGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAA ACACCGTAGTGTACGGCCCCCTCCAGCAAAGCTTTGACAAA < 41bp 0.654201084578852 0.903481270135021 0.035533905 0.9542278 prediction 0.498560371112339 Functional Gain - COX4I1 ENSG00000131143 CDS Human protein_coding chr16:85840355 chr16:85840359 nonsynonymous SNV 0.626 4 25 hm5C_associated_SNPs_108588 0 0 1 0 1 COX4I1 chr16:85840344 3'AG 85840344 Downstream 16bp
chr4 17841393 17841393 1 + T C UCEC 17841391 + 17841371 17841411 41 ATTCGAGTCTATACAAAAGCCTTGAGTTCTTTAGAACTCAG ATTCGAGTCTATACAAAAGCCTCGAGTTCTTTAGAACTCAG < 41bp 0.58947239805902 0.838746820935706 0.10662073 0.32832596 prediction 0.498548845753371 Functional Gain - NCAPG ENSG00000109805 CDS Human protein_coding chr4:17841391 chr4:17841393 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_108589 0 0 1 0 2 NCAPG chr4:17841299 3'AG 17841299 Downstream 95bp
chr4 17841393 17841393 1 + T C UCEC 17841391 + 17841371 17841411 41 ATTCGAGTCTATACAAAAGCCTTGAGTTCTTTAGAACTCAG ATTCGAGTCTATACAAAAGCCTCGAGTTCTTTAGAACTCAG < 41bp 0.58947239805902 0.838746820935706 0.10662073 0.32832596 prediction 0.498548845753371 Functional Gain - NCAPG ENSG00000109805 CDS Human protein_coding chr4:17841391 chr4:17841393 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_108589 0 0 1 0 2 NCAPG chr4:17841460 5'GT 17841460 Upstream 68bp
chr17 78091445 78091445 1 + C T SKCM 78091444 + 78091424 78091464 41 TCCCACCCCCACCTGCAGCTCCCCGTGAGCCAGCCATCCAC TCCCACCCCCACCTGCAGCTCTCCGTGAGCCAGCCATCCAC < 41bp 0.510786768712569 0.760046552939673 0.20144784 0.5264448 prediction 0.498519568454207 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78091444 chr17:78091445 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_108592 0 0 1 0 1 GAA chr17:78091399 3'AG 78091399 Downstream 47bp
chr22 39120346 39120346 1 + C T SKCM 39120345 + 39120325 39120365 41 CTGCTGAAGTCACCAGGCTGCCGGAAGATCCCCGTGCTGGT CTGCTGAAGTCACCAGGCTGCTGGAAGATCCCCGTGCTGGT < 41bp 0.498530248092867 0.749249002599775 0.69546455 0.32721955 prediction 0.49849800519955 Functional Gain - GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39120345 chr22:39120346 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_108594 0 0 1 0 2 GTPBP1 chr22:39120302 3'AG 39120302 Downstream 45bp
chr22 39120346 39120346 1 + C T SKCM 39120345 + 39120325 39120365 41 CTGCTGAAGTCACCAGGCTGCCGGAAGATCCCCGTGCTGGT CTGCTGAAGTCACCAGGCTGCTGGAAGATCCCCGTGCTGGT < 41bp 0.498530248092867 0.749249002599775 0.69546455 0.32721955 prediction 0.49849800519955 Functional Gain - GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39120345 chr22:39120346 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_108594 0 0 1 0 2 GTPBP1 chr22:39120416 5'GT 39120416 Upstream 71bp
chrX 77359863 77359863 1 + T G STAD 77359860 + 77359840 77359880 41 GTCGCTTTCTAACAAGCTGACGCTGGACAAGCTGGACGTTA GTCGCTTTCTAACAAGCTGACGCGGGACAAGCTGGACGTTA < 41bp 0.37355564558753 0.749239394714143 0.15911731 0.38412413 prediction 0.498478789428285 Functional Gain - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77359860 chrX:77359863 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_108595 0 0 1 0 1 PGK1 chrX:77359902 5'GT 77359902 Upstream 40bp
chr20 42694513 42694513 1 + C G LUAD 42694512 + 42694492 42694532 41 GGCCTCCCCTGCCAGCCTCGCCCGGACGCTGGGCTCCAAGT GGCCTCCCCTGCCAGCCTCGCGCGGACGCTGGGCTCCAAGT < 41bp 0.429255862021893 0.749237749230195 0.79930943 0.92483366 prediction 0.49847549846039 Functional Gain - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42694512 chr20:42694513 synonymous SNV . 0 22 hm5C_associated_SNPs_108597 0 0 0 0 1 TOX2 chr20:42694550 5'GT 42694550 Upstream 38bp
chr18 72173231 72173231 1 + C A LUSC 72173230 + 72173210 72173250 41 TGGGACAGCGAGCCCTTCACCCTGGTGGAGCGAGACGGTGA TGGGACAGCGAGCCCTTCACCATGGTGGAGCGAGACGGTGA < 41bp 0.515096475832563 0.76433036338881 0.2323536 0.43486196 prediction 0.498467775112494 Functional Gain - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72173230 chr18:72173231 nonsynonymous SNV 0.992 1 22 hm5C_associated_SNPs_108598 0 0 1 0 1 CNDP2 chr18:72173246 5'GT 72173246 Upstream 16bp
chr4 120079242 120079242 1 + C T SKCM 120079241 + 120079221 120079261 41 GGAAGGTGGTTCGCAGCAAGCCCCCTTGACTCCTCCCAACA GGAAGGTGGTTCGCAGCAAGCTCCCTTGACTCCTCCCAACA < 41bp 0.519684762918978 0.768907256278411 0.08999032 0.09971318 prediction 0.498444986718865 Functional Gain - MYOZ2 ENSG00000172399 CDS Human protein_coding chr4:120079241 chr4:120079242 synonymous SNV . 0 22 hm5C_associated_SNPs_108599 0 0 0 0 2 MYOZ2 chr4:120079177 3'AG 120079177 Downstream 66bp
chr4 120079242 120079242 1 + C T SKCM 120079241 + 120079221 120079261 41 GGAAGGTGGTTCGCAGCAAGCCCCCTTGACTCCTCCCAACA GGAAGGTGGTTCGCAGCAAGCTCCCTTGACTCCTCCCAACA < 41bp 0.519684762918978 0.768907256278411 0.08999032 0.09971318 prediction 0.498444986718865 Functional Gain - MYOZ2 ENSG00000172399 CDS Human protein_coding chr4:120079241 chr4:120079242 synonymous SNV . 0 22 hm5C_associated_SNPs_108599 0 0 0 0 2 MYOZ2 chr4:120079306 5'GT 120079306 Upstream 65bp
chr7 127231141 127231141 1 + C G LUSC 127231137 + 127231117 127231157 41 GGCTACAGCACTTACGCAGCCGCACGGTAGGGGTCCTGCCC GGCTACAGCACTTACGCAGCCGCAGGGTAGGGGTCCTGCCC < 41bp 0.55872206601687 0.807931840048787 0.0974333 0.22966444 prediction 0.498419548063834 Functional Gain - ARF5 ENSG00000004059 CDS Human protein_coding chr7:127231137 chr7:127231141 nonsynonymous SNV 0.972 1 25 hm5C_associated_SNPs_108600 0 0 1 0 1 ARF5 chr7:127231142 5'GT 127231142 Upstream 2bp
chr10 74882006 74882006 1 + T G UCEC 74882003 + 74881983 74882023 41 GATTCTGTGCTGATTGGATGCTCTGAGCAGCAGGAAGCATG GATTCTGTGCTGATTGGATGCTCGGAGCAGCAGGAAGCATG < 41bp 0.465853449821929 0.749207610680387 0.16124758 0.22216088 prediction 0.498415221360774 Functional Gain - NUDT13 ENSG00000166321 CDS Human protein_coding chr10:74882003 chr10:74882006 synonymous SNV . 0 24 hm5C_associated_SNPs_108601 0 0 1 1 1 NUDT13 chr10:74882067 5'GT 74882067 Upstream 62bp
chr19 41268941 41268941 1 + C G LUSC 41268937 + 41268917 41268957 41 ATCCCACCAGGGGCCATGCCCCCGCAGCAGCTTATGCCAGG ATCCCACCAGGGGCCATGCCCCCGGAGCAGCTTATGCCAGG < 41bp 0.558903190362349 0.808108938430906 0.28709757 0.29645482 prediction 0.498411496137114 Functional Gain - SNRPA ENSG00000077312 CDS Human protein_coding chr19:41268937 chr19:41268941 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_108602 0 0 1 0 1 SNRPA chr19:41268979 5'GT 41268979 Upstream 39bp
chr19 46375364 46375364 1 + T C rs566369055 46375362 + 46375342 46375382 41 CCGGTGACCCCAGTGCCCACCATGGCCCCCCTCAACTCCTA CCGGTGACCCCAGTGCCCACCACGGCCCCCCTCAACTCCTA < 41bp 0.503533813563146 0.752731800173213 0.019800752 0.040439308 prediction 0.498395973220136 Functional Gain - FOXA3 ENSG00000170608 CDS Human protein_coding chr19:46375362 chr19:46375364 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_108605 0 0 1 0 1 FOXA3 chr19:46375333 3'AG 46375333 Downstream 32bp
chr20 44641127 44641127 1 + C A LUAD 44641126 + 44641106 44641146 41 CGCGCTGGGCTTAGATCATTCCTCAGTGCCGGAGGCGCTCA CGCGCTGGGCTTAGATCATTCATCAGTGCCGGAGGCGCTCA < 41bp 0.506771303560393 0.755962680021245 0.064139515 0.09094748 prediction 0.498382752921705 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44641126 chr20:44641127 synonymous SNV . 0 22 hm5C_associated_SNPs_108609 0 0 0 0 2 MMP9 chr20:44641066 3'AG 44641066 Downstream 62bp
chr20 44641127 44641127 1 + C A LUAD 44641126 + 44641106 44641146 41 CGCGCTGGGCTTAGATCATTCCTCAGTGCCGGAGGCGCTCA CGCGCTGGGCTTAGATCATTCATCAGTGCCGGAGGCGCTCA < 41bp 0.506771303560393 0.755962680021245 0.064139515 0.09094748 prediction 0.498382752921705 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44641126 chr20:44641127 synonymous SNV . 0 22 hm5C_associated_SNPs_108609 0 0 0 0 2 MMP9 chr20:44641221 5'GT 44641221 Upstream 95bp
chr10 98092307 98092307 1 + C T SKCM 98092306 + 98092286 98092326 41 GTGTGGATTTAGTTCTGTGCCCCTACGAGCGTCGTGCCTTT GTGTGGATTTAGTTCTGTGCCTCTACGAGCGTCGTGCCTTT < 41bp 0.530300683929686 0.779481978792015 0.045981407 0.8983121 prediction 0.498362589724658 Functional Gain - DNTT ENSG00000107447 CDS Human protein_coding chr10:98092306 chr10:98092307 nonsynonymous SNV 0.975 4 22 hm5C_associated_SNPs_108610 0 0 0 0 1 DNTT chr10:98092353 5'GT 98092353 Upstream 47bp
chr20 42972146 42972146 1 + C A READ 42972145 + 42972125 42972165 41 CCCCACCTGCTCCCATTATACCCAGGTACTCCTCCGTCAGG CCCCACCTGCTCCCATTATACACAGGTACTCCTCCGTCAGG < 41bp 0.545456324136568 0.794634917987221 0.395922 0.3892862 prediction 0.498357187701305 Functional Gain - R3HDML ENSG00000101074 CDS Human protein_coding chr20:42972145 chr20:42972146 synonymous SNV . 0 22 hm5C_associated_SNPs_108611 0 0 0 0 1 R3HDML chr20:42972149 5'GT 42972149 Upstream 4bp
chr5 118969960 118969960 1 + C G rs328694 118969959 + 118969939 118969979 41 GTTGTGAGGGTAGGTACTCCCCCCTCTGATGTGTCCACCAG GTTGTGAGGGTAGGTACTCCCGCCTCTGATGTGTCCACCAG < 41bp 0.612082556747797 0.861216849053147 0.05545786 0.12083253 prediction 0.4982685846107 Functional Gain - FAM170A ENSG00000164334 CDS Human protein_coding chr5:118969959 chr5:118969960 nonsynonymous SNV 0.157 3 22 hm5C_associated_SNPs_108618 0 0 0 0 1 FAM170A chr5:118969947 3'AG 118969947 Downstream 14bp
chr21 43702437 43702437 1 + C A MESO 43702436 + 43702416 43702456 41 GTCTTGCGCCAACACGCGGACCGGGAGCCTGTCAGGTGGTC GTCTTGCGCCAACACGCGGACAGGGAGCCTGTCAGGTGGTC < 41bp 0.5191120527966 0.76824052847729 0.4387473 0.40102226 prediction 0.49825695136138 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43702436 chr21:43702437 synonymous SNV . 0 22 hm5C_associated_SNPs_108621 0 0 0 0 2 ABCG1 chr21:43702384 3'AG 43702384 Downstream 54bp
chr21 43702437 43702437 1 + C A MESO 43702436 + 43702416 43702456 41 GTCTTGCGCCAACACGCGGACCGGGAGCCTGTCAGGTGGTC GTCTTGCGCCAACACGCGGACAGGGAGCCTGTCAGGTGGTC < 41bp 0.5191120527966 0.76824052847729 0.4387473 0.40102226 prediction 0.49825695136138 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43702436 chr21:43702437 synonymous SNV . 0 22 hm5C_associated_SNPs_108621 0 0 0 0 2 ABCG1 chr21:43702529 5'GT 43702529 Upstream 93bp
chr1 181546961 181546961 1 + C A PRAD 181546957 + 181546937 181546977 41 ACGTGGACCTGAGGACCCTCCGGGCTGTGCGTGTCCTGCGG ACGTGGACCTGAGGACCCTCCGGGATGTGCGTGTCCTGCGG < 41bp 0.37659435548839 0.749117991100719 0.91662884 0.91471905 prediction 0.498235982201439 Functional Gain - CACNA1E ENSG00000198216 CDS Human protein_coding chr1:181546957 chr1:181546961 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_108622 0 0 0 0 2 CACNA1E chr1:181546902 3'AG 181546902 Downstream 60bp
chr1 181546961 181546961 1 + C A PRAD 181546957 + 181546937 181546977 41 ACGTGGACCTGAGGACCCTCCGGGCTGTGCGTGTCCTGCGG ACGTGGACCTGAGGACCCTCCGGGATGTGCGTGTCCTGCGG < 41bp 0.37659435548839 0.749117991100719 0.91662884 0.91471905 prediction 0.498235982201439 Functional Gain - CACNA1E ENSG00000198216 CDS Human protein_coding chr1:181546957 chr1:181546961 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_108622 0 0 0 0 2 CACNA1E chr1:181547005 5'GT 181547005 Upstream 45bp
chr2 27150172 27150172 1 + C T SKCM 27150171 + 27150151 27150191 41 GAGAAGGGTGTCAACTCGTTCCAGATGTTCATGACCTACAA GAGAAGGGTGTCAACTCGTTCTAGATGTTCATGACCTACAA < 41bp 0.488487759081109 0.749116497357725 0.3977077 0.3088202 prediction 0.498232994715449 Functional Gain - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27150171 chr2:27150172 stopgain 0.997 1 22 hm5C_associated_SNPs_108624 0 0 1 0 1 DPYSL5 chr2:27150121 3'AG 27150121 Downstream 52bp
chr22 45685012 45685012 1 + C T SKCM 45685011 + 45684991 45685031 41 ACCCTGTGGTCAGACCCCATCCGCACCAACCAGCGTAAGTG ACCCTGTGGTCAGACCCCATCTGCACCAACCAGCGTAAGTG < 41bp 0.503997211053523 0.753095204098351 0.031069487 0.06586841 prediction 0.498195986089656 Functional Gain - UPK3A ENSG00000100373 CDS Human protein_coding chr22:45685011 chr22:45685012 nonsynonymous SNV 0.780 0 22 hm5C_associated_SNPs_108627 0 0 0 0 1 UPK3A chr22:45684942 3'AG 45684942 Downstream 71bp
chr11 57135523 57135523 1 + C T COAD 57135522 + 57135502 57135542 41 ATGGAAAATGGCAGTGAGTACCGCACCCTCCTGAAGGCTTT ATGGAAAATGGCAGTGAGTACTGCACCCTCCTGAAGGCTTT < 41bp 0.492558465458128 0.749081199449866 0.16551533 0.18032166 prediction 0.498162398899731 Functional Gain - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57135522 chr11:57135523 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_108628 0 0 0 0 2 P2RX3 chr11:57135483 3'AG 57135483 Downstream 41bp
chr11 57135523 57135523 1 + C T COAD 57135522 + 57135502 57135542 41 ATGGAAAATGGCAGTGAGTACCGCACCCTCCTGAAGGCTTT ATGGAAAATGGCAGTGAGTACTGCACCCTCCTGAAGGCTTT < 41bp 0.492558465458128 0.749081199449866 0.16551533 0.18032166 prediction 0.498162398899731 Functional Gain - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57135522 chr11:57135523 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_108628 0 0 0 0 2 P2RX3 chr11:57135576 5'GT 57135576 Upstream 54bp
chr15 67457672 67457672 1 + C T SKCM 67457671 + 67457651 67457691 41 ACGACTACAGCCATTCCATCCCCGAAAACACTAACTTCCCC ACGACTACAGCCATTCCATCCTCGAAAACACTAACTTCCCC < 41bp 0.561711339511139 0.810790367154249 0.094715744 0.89352113 prediction 0.49815805528622 Functional Gain - SMAD3 ENSG00000166949 CDS Human protein_coding chr15:67457671 chr15:67457672 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_108629 0 0 1 0 2 SMAD3 chr15:67457591 3'AG 67457591 Downstream 82bp
chr15 67457672 67457672 1 + C T SKCM 67457671 + 67457651 67457691 41 ACGACTACAGCCATTCCATCCCCGAAAACACTAACTTCCCC ACGACTACAGCCATTCCATCCTCGAAAACACTAACTTCCCC < 41bp 0.561711339511139 0.810790367154249 0.094715744 0.89352113 prediction 0.49815805528622 Functional Gain - SMAD3 ENSG00000166949 CDS Human protein_coding chr15:67457671 chr15:67457672 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_108629 0 0 1 0 2 SMAD3 chr15:67457722 5'GT 67457722 Upstream 51bp
chr16 1396058 1396058 1 + C A LUSC 1396054 + 1396034 1396074 41 GGTGGACACTCAGCCAGGGGCGGCCGGTGAAGCAGTGAGCG GGTGGACACTCAGCCAGGGGCGGCAGGTGAAGCAGTGAGCG < 41bp 0.339119944322647 0.749075305817515 0.47084653 0.7234726 prediction 0.498150611635031 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1396054 chr16:1396058 synonymous SNV . 0 25 hm5C_associated_SNPs_108630 0 0 1 0 2 BAIAP3 chr16:1395987 3'AG 1395987 Downstream 72bp
chr16 1396058 1396058 1 + C A LUSC 1396054 + 1396034 1396074 41 GGTGGACACTCAGCCAGGGGCGGCCGGTGAAGCAGTGAGCG GGTGGACACTCAGCCAGGGGCGGCAGGTGAAGCAGTGAGCG < 41bp 0.339119944322647 0.749075305817515 0.47084653 0.7234726 prediction 0.498150611635031 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1396054 chr16:1396058 synonymous SNV . 0 25 hm5C_associated_SNPs_108630 0 0 1 0 2 BAIAP3 chr16:1396079 5'GT 1396079 Upstream 22bp
chr7 135347244 135347244 1 + C A rs545980371 135347240 + 135347220 135347260 41 GAAGTCGACGAGGGGTTCCGCCCCCCCCGCGCATGGGGAGG GAAGTCGACGAGGGGTTCCGCCCCACCCGCGCATGGGGAGG < 41bp 0.385368357048615 0.749073743759018 0.3454126 0.17482007 prediction 0.498147487518035 Functional Gain - C7orf73 ENSG00000243317 upstream Human protein_coding chr7:135347240 chr7:135347244 . . 0 25 hm5C_associated_SNPs_108631 0 0 0 0 1 C7orf73 chr7:135347342 5'GT 135347342 Upstream 99bp
chr20 55012583 55012583 1 + C T UCEC 55012582 + 55012562 55012602 41 ACTGCCCAAGTCTATGAATTCCCCGACCCTCCCACCAGTGC ACTGCCCAAGTCTATGAATTCTCCGACCCTCCCACCAGTGC < 41bp 0.489203668354328 0.749072782636149 0.06468129 0.09519905 prediction 0.498145565272299 Functional Gain - CASS4 ENSG00000087589 CDS Human protein_coding chr20:55012582 chr20:55012583 nonsynonymous SNV 0.477 3 22 hm5C_associated_SNPs_108632 0 0 0 0 1 CASS4 chr20:55012642 5'GT 55012642 Upstream 60bp
chr20 45801394 45801394 1 + C T SKCM 45801393 + 45801373 45801413 41 TGACGGCTTCCACAGTTCGGCCCCAGGAGCCAACCTGTGCC TGACGGCTTCCACAGTTCGGCTCCAGGAGCCAACCTGTGCC < 41bp 0.484420234468395 0.749068796447219 0.08209303 0.89905167 prediction 0.498137592894437 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45801393 chr20:45801394 synonymous SNV . 0 22 hm5C_associated_SNPs_108634 0 0 0 0 1 EYA2 chr20:45801355 3'AG 45801355 Downstream 40bp
chr11 70009435 70009435 1 + C T DLBC 70009434 + 70009414 70009454 41 GTGTACATTTTCCGTTCCTTCCGAATGGAAGAGGTAACCGA GTGTACATTTTCCGTTCCTTCTGAATGGAAGAGGTAACCGA < 41bp 0.514099151098407 0.76316392025399 0.05235052 0.07414466 prediction 0.498129538311167 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70009434 chr11:70009435 stopgain 0.950 1 22 hm5C_associated_SNPs_108635 0 0 0 0 2 ANO1 chr11:70009389 3'AG 70009389 Downstream 47bp
chr11 70009435 70009435 1 + C T DLBC 70009434 + 70009414 70009454 41 GTGTACATTTTCCGTTCCTTCCGAATGGAAGAGGTAACCGA GTGTACATTTTCCGTTCCTTCTGAATGGAAGAGGTAACCGA < 41bp 0.514099151098407 0.76316392025399 0.05235052 0.07414466 prediction 0.498129538311167 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70009434 chr11:70009435 stopgain 0.950 1 22 hm5C_associated_SNPs_108635 0 0 0 0 2 ANO1 chr11:70009446 5'GT 70009446 Upstream 12bp
chr19 1026653 1026653 1 + C A rs532321155 1026649 + 1026629 1026669 41 TGCGGCCCCGTCCCGCCGCCCGCCCGCCAGCCATGAGCTCC TGCGGCCCCGTCCCGCCGCCCGCCAGCCAGCCATGAGCTCC < 41bp 0.545475377163439 0.794528065798623 0.04548061 0.06356296 prediction 0.49810537727037 Functional Gain - CNN2 ENSG00000064666 UTR5 Human protein_coding chr19:1026649 chr19:1026653 . . 0 25 hm5C_associated_SNPs_108638 0 0 1 0 1 CNN2 chr19:1026723 5'GT 1026723 Upstream 71bp
chr14 24642164 24642164 1 + C T PRAD 24642163 + 24642143 24642183 41 AACCCCCGCAGCCCGGCCTGCCGCGGCCCCGCTTCTCCCTC AACCCCCGCAGCCCGGCCTGCTGCGGCCCCGCTTCTCCCTC < 41bp 0.508446513207101 0.757497357495671 0.14835632 0.057891876 prediction 0.49810168857714 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24642163 chr14:24642164 nonsynonymous SNV 0.178 4 22 hm5C_associated_SNPs_108639 0 0 0 0 2 REC8 chr14:24642108 3'AG 24642108 Downstream 57bp
chr14 24642164 24642164 1 + C T PRAD 24642163 + 24642143 24642183 41 AACCCCCGCAGCCCGGCCTGCCGCGGCCCCGCTTCTCCCTC AACCCCCGCAGCCCGGCCTGCTGCGGCCCCGCTTCTCCCTC < 41bp 0.508446513207101 0.757497357495671 0.14835632 0.057891876 prediction 0.49810168857714 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24642163 chr14:24642164 nonsynonymous SNV 0.178 4 22 hm5C_associated_SNPs_108639 0 0 0 0 2 REC8 chr14:24642250 5'GT 24642250 Upstream 87bp
chr2 85857929 85857929 1 + T C UCEC 85857927 + 85857907 85857947 41 AAACGTCCTCCAGGGGATATCATGTTCTTGTTGGTCCAGCG AAACGTCCTCCAGGGGATATCACGTTCTTGTTGGTCCAGCG < 41bp 0.474948462493968 0.74904720232781 0.22762161 0.2195639 prediction 0.498094404655621 Functional Gain - USP39 ENSG00000168883 CDS Human protein_coding chr2:85857927 chr2:85857929 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_108640 0 0 1 0 1 USP39 chr2:85857844 3'AG 85857844 Downstream 86bp
chr22 25294011 25294011 1 + C T SKCM 25294010 + 25293990 25294030 41 GAGGAGAAACAGCCCAAGATCCCCAATGGGAACCTAGTGAA GAGGAGAAACAGCCCAAGATCTCCAATGGGAACCTAGTGAA < 41bp 0.565870725806371 0.814894429222711 0.07531014 0.95828426 prediction 0.498047406832681 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25294010 chr22:25294011 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_108645 0 0 0 0 1 SGSM1 chr22:25293939 3'AG 25293939 Downstream 73bp
chr8 134237689 134237689 1 + T A LUAD 134237685 + 134237665 134237705 41 AACTGCATAGCCTACACAAGCCCCTGGAGCCCTTGCTCCAC AACTGCATAGCCTACACAAGCCCCAGGAGCCCTTGCTCCAC < 41bp 0.415373138681272 0.749017154768107 0.26014197 0.17896494 prediction 0.498034309536214 Functional Gain - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134237685 chr8:134237689 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_108647 0 0 0 0 1 WISP1 chr8:134237633 3'AG 134237633 Downstream 57bp
chr15 92977544 92977544 1 + C A LUSC 92977540 + 92977520 92977560 41 GACAGAAGTAATGAAAGCATCAAGCACAACATCCAGCCAGC GACAGAAGTAATGAAAGCATCAAGAACAACATCCAGCCAGC < 41bp 0.332621965970503 0.749008537981432 0.23081887 0.30339354 prediction 0.498017075962864 Functional Gain - ST8SIA2 ENSG00000140557 CDS Human protein_coding chr15:92977540 chr15:92977544 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_108649 0 0 0 0 2 ST8SIA2 chr15:92977477 3'AG 92977477 Downstream 68bp
chr15 92977544 92977544 1 + C A LUSC 92977540 + 92977520 92977560 41 GACAGAAGTAATGAAAGCATCAAGCACAACATCCAGCCAGC GACAGAAGTAATGAAAGCATCAAGAACAACATCCAGCCAGC < 41bp 0.332621965970503 0.749008537981432 0.23081887 0.30339354 prediction 0.498017075962864 Functional Gain - ST8SIA2 ENSG00000140557 CDS Human protein_coding chr15:92977540 chr15:92977544 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_108649 0 0 0 0 2 ST8SIA2 chr15:92977605 5'GT 92977605 Upstream 62bp
chr14 101195299 101195299 1 + T A LUSC 101195295 + 101195275 101195315 41 GCCAGCCTGGCTGGCAGGGTCCCCTTTGTGACCAGTGCGTG GCCAGCCTGGCTGGCAGGGTCCCCATTGTGACCAGTGCGTG < 41bp 0.409882949983232 0.749003547619607 0.04016474 0.042856663 prediction 0.498007095239214 Functional Gain - DLK1 ENSG00000185559 CDS Human protein_coding chr14:101195295 chr14:101195299 nonsynonymous SNV 0.974 2 25 hm5C_associated_SNPs_108651 0 0 1 0 1 DLK1 chr14:101195273 3'AG 101195273 Downstream 27bp
chr11 65338930 65338930 1 + C A rs538598804 65338929 + 65338909 65338949 41 GCCTCAGCCTCAGAGCTCCCCCTGGGCTCTCGACCTGCGCC GCCTCAGCCTCAGAGCTCCCCATGGGCTCTCGACCTGCGCC < 41bp 0.520609682594497 0.769605814366631 0.20194164 0.8607662 prediction 0.497992263544268 Functional Gain - SSSCA1 ENSG00000173465 CDS Human protein_coding chr11:65338929 chr11:65338930 nonsynonymous SNV 0.005 0 22 hm5C_associated_SNPs_108652 0 0 0 0 1 SSSCA1 chr11:65338862 3'AG 65338862 Downstream 69bp
chr19 42828943 42828943 1 + C G rs540616003 42828939 + 42828919 42828959 41 CTCCCGCTGTTCCGTGACCTCCGGCCCCCTGGCCCCCTTCG CTCCCGCTGTTCCGTGACCTCCGGGCCCCTGGCCCCCTTCG < 41bp 0.552165484059926 0.80115916383552 0.74934155 0.8967354 prediction 0.497987359551187 Functional Gain - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42828939 chr19:42828943 nonsynonymous SNV 0.979 1 25 hm5C_associated_SNPs_108653 0 0 1 0 1 TMEM145 chr19:42828889 3'AG 42828889 Downstream 55bp
chr1 53927166 53927166 1 + C A LUAD 53927165 + 53927145 53927185 41 GTGCGCCCTCTGAACATCAACCCGGACCGTGCACTGGGCCC GTGCGCCCTCTGAACATCAACACGGACCGTGCACTGGGCCC < 41bp 0.516600451093006 0.765578359339016 0.1813483 0.22097161 prediction 0.49795581649202 Functional Gain - DMRTB1 ENSG00000143006 CDS Human protein_coding chr1:53927165 chr1:53927166 nonsynonymous SNV 0.041 0 22 hm5C_associated_SNPs_108658 0 0 0 0 1 DMRTB1 chr1:53927146 3'AG 53927146 Downstream 21bp
chr11 124007759 124007759 1 + C T SKCM 124007758 + 124007738 124007778 41 CTTGCTGCCAAGTCCTTGCTCCAGACCAAGGACATGGGCCT CTTGCTGCCAAGTCCTTGCTCTAGACCAAGGACATGGGCCT < 41bp 0.49466319088809 0.748973920016981 0.30130577 0.13197091 prediction 0.497947840033962 Functional Gain - VWA5A ENSG00000110002 CDS Human protein_coding chr11:124007758 chr11:124007759 stopgain 0.828 1 22 hm5C_associated_SNPs_108660 0 0 0 0 1 VWA5A chr11:124007722 3'AG 124007722 Downstream 38bp
chr15 42137955 42137955 1 + C T STAD 42137954 + 42137934 42137974 41 ATGAAGAGGCTTCCTGAGTCCCGCATCTGCTTCTTAGAAGG ATGAAGAGGCTTCCTGAGTCCTGCATCTGCTTCTTAGAAGG < 41bp 0.507126475190943 0.756099900750348 0.08167368 0.14876872 prediction 0.497946851118809 Functional Gain - JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42137954 chr15:42137955 nonsynonymous SNV 0.986 4 22 hm5C_associated_SNPs_108661 0 0 1 0 1 JMJD7-PLA2G4B;PLA2G4B chr15:42137973 5'GT 42137973 Upstream 19bp
chr7 135347245 135347245 1 + C G rs569661448 135347244 + 135347224 135347264 41 TCGACGAGGGGTTCCGCCCCCCCCGCGCATGGGGAGGTAGG TCGACGAGGGGTTCCGCCCCCGCCGCGCATGGGGAGGTAGG < 41bp 0.574439031824007 0.82340803646259 0.1947293 0.25524154 prediction 0.497938009277167 Functional Gain - C7orf73 ENSG00000243317 upstream Human protein_coding chr7:135347244 chr7:135347245 . . 0 22 hm5C_associated_SNPs_108663 0 0 0 0 1 C7orf73 chr7:135347342 5'GT 135347342 Upstream 98bp
chr9 133936571 133936571 1 + C A rs3739510 133936570 + 133936550 133936590 41 TGTACGACCATCCCAGAGAGCCGGGAGGTGGTGTGTACCCA TGTACGACCATCCCAGAGAGCAGGGAGGTGGTGTGTACCCA < 41bp 0.488180329839656 0.748965743978343 0.89319986 0.9110978 prediction 0.497931487956687 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133936570 chr9:133936571 synonymous SNV . 0 22 hm5C_associated_SNPs_108665 0 0 0 0 1 LAMC3 chr9:133936610 5'GT 133936610 Upstream 40bp
chr16 2870969 2870969 1 + C A STAD 2870965 + 2870945 2870985 41 CGTCCGCACAGCACTGCCATCTCCCCACACCCTCCAGGAAG CGTCCGCACAGCACTGCCATCTCCACACACCCTCCAGGAAG < 41bp 0.319576911338511 0.748965261936206 0.068348885 0.9434364 prediction 0.497930523872413 Functional Gain - PRSS21 ENSG00000007038 CDS Human protein_coding chr16:2870965 chr16:2870969 synonymous SNV . 0 25 hm5C_associated_SNPs_108666 0 0 1 0 2 PRSS21 chr16:2870956 3'AG 2870956 Downstream 14bp
chr16 2870969 2870969 1 + C A STAD 2870965 + 2870945 2870985 41 CGTCCGCACAGCACTGCCATCTCCCCACACCCTCCAGGAAG CGTCCGCACAGCACTGCCATCTCCACACACCCTCCAGGAAG < 41bp 0.319576911338511 0.748965261936206 0.068348885 0.9434364 prediction 0.497930523872413 Functional Gain - PRSS21 ENSG00000007038 CDS Human protein_coding chr16:2870965 chr16:2870969 synonymous SNV . 0 25 hm5C_associated_SNPs_108666 0 0 1 0 2 PRSS21 chr16:2871068 5'GT 2871068 Upstream 100bp
chr15 41657673 41657673 1 + C T LUAD 41657672 + 41657652 41657692 41 GACTCTCTGTGGCTTCTACTCCCATCAGCCAACGACGCTCG GACTCTCTGTGGCTTCTACTCTCATCAGCCAACGACGCTCG < 41bp 0.518576184496613 0.767530824046688 0.28038564 0.24554312 prediction 0.497909279100149 Functional Gain - NUSAP1 ENSG00000137804 CDS Human protein_coding chr15:41657672 chr15:41657673 nonsynonymous SNV 0.013 4 22 hm5C_associated_SNPs_108667 0 0 1 0 2 NUSAP1 chr15:41657600 3'AG 41657600 Downstream 74bp
chr15 41657673 41657673 1 + C T LUAD 41657672 + 41657652 41657692 41 GACTCTCTGTGGCTTCTACTCCCATCAGCCAACGACGCTCG GACTCTCTGTGGCTTCTACTCTCATCAGCCAACGACGCTCG < 41bp 0.518576184496613 0.767530824046688 0.28038564 0.24554312 prediction 0.497909279100149 Functional Gain - NUSAP1 ENSG00000137804 CDS Human protein_coding chr15:41657672 chr15:41657673 nonsynonymous SNV 0.013 4 22 hm5C_associated_SNPs_108667 0 0 1 0 2 NUSAP1 chr15:41657603 3'AG 41657603 Downstream 71bp
chr6 39824205 39824205 1 + C T SKCM 39824204 + 39824184 39824224 41 ATGGAGTTCTCCAGCCCCATCCCGAACGCAGAGGAGCTCAA ATGGAGTTCTCCAGCCCCATCTCGAACGCAGAGGAGCTCAA < 41bp 0.476165133421426 0.748952226249782 0.19968548 0.9032813 prediction 0.497904452499563 Functional Gain - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39824204 chr6:39824205 nonsynonymous SNV 0.335 4 22 hm5C_associated_SNPs_108668 0 0 0 0 1 DAAM2 chr6:39824246 5'GT 39824246 Upstream 42bp
chr7 102579980 102579980 1 + T G SKCM 102579978 + 102579958 102579998 41 CCAAGGAATTTGAAGATGTTCATGAGCTGAAGAAATTAAAC CCAAGGAATTTGAAGATGTTCAGGAGCTGAAGAAATTAAAC < 41bp 0.621033230623193 0.86996914250787 0.09633207 0.8997905 prediction 0.497871823769352 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102579978 chr7:102579980 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_108669 0 0 0 0 1 LRRC17 chr7:102580032 5'GT 102580032 Upstream 53bp
chr19 10823815 10823815 1 + C T CESC 10823814 + 10823794 10823834 41 CTGCAGCTCATGAGCGCCGTCCGCACCAGCATCGTGGAGAA CTGCAGCTCATGAGCGCCGTCTGCACCAGCATCGTGGAGAA < 41bp 0.518287067434769 0.76720996073328 0.09714359 0.18542898 prediction 0.497845786597021 Functional Gain - QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10823814 chr19:10823815 nonsynonymous SNV 0.748 3 22 hm5C_associated_SNPs_108670 0 0 1 1 1 QTRT1 chr19:10823873 5'GT 10823873 Upstream 59bp
chr1 26508429 26508429 1 + T C rs375302474 26508427 + 26508407 26508447 41 AGGAGCTGAGCCAGGTCTTGCATGAGGTAGGAGAACCAAGG AGGAGCTGAGCCAGGTCTTGCACGAGGTAGGAGAACCAAGG < 41bp 0.540431872096971 0.789351610951286 0.8272337 0.87485635 prediction 0.497839477708631 Functional Gain - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26508427 chr1:26508429 synonymous SNV . 0 23 hm5C_associated_SNPs_108671 0 0 1 0 2 CNKSR1 chr1:26508348 3'AG 26508348 Downstream 82bp
chr1 26508429 26508429 1 + T C rs375302474 26508427 + 26508407 26508447 41 AGGAGCTGAGCCAGGTCTTGCATGAGGTAGGAGAACCAAGG AGGAGCTGAGCCAGGTCTTGCACGAGGTAGGAGAACCAAGG < 41bp 0.540431872096971 0.789351610951286 0.8272337 0.87485635 prediction 0.497839477708631 Functional Gain - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26508427 chr1:26508429 synonymous SNV . 0 23 hm5C_associated_SNPs_108671 0 0 1 0 2 CNKSR1 chr1:26508432 5'GT 26508432 Upstream 4bp
chr15 32933919 32933919 1 + C G rs116788855 32933915 + 32933895 32933935 41 GACGCACTAGCTCTCCAGTTCGCCCGTTCCTGGCCTGACCC GACGCACTAGCTCTCCAGTTCGCCGGTTCCTGGCCTGACCC < 41bp 0.534783343484164 0.78369153958214 0.24825826 0.6336727 prediction 0.497816392195952 Functional Gain - SCG5 ENSG00000166922 UTR5 Human protein_coding chr15:32933915 chr15:32933919 . . 0 25 hm5C_associated_SNPs_108673 0 0 0 0 1 SCG5 chr15:32933979 5'GT 32933979 Upstream 61bp
chr12 9009835 9009835 1 + T C THYM 9009833 + 9009813 9009853 41 AGTGGCTGTGGCGAGCAGAACATGGTCTTGTTTGCTCCCAT AGTGGCTGTGGCGAGCAGAACACGGTCTTGTTTGCTCCCAT < 41bp 0.550745743399176 0.799653699255316 0.41162086 0.56021005 prediction 0.49781591171228 Functional Gain - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9009833 chr12:9009835 nonsynonymous SNV 0.848 3 23 hm5C_associated_SNPs_108674 0 0 0 0 1 A2ML1 chr12:9009760 3'AG 9009760 Downstream 76bp
chr16 90110384 90110384 1 - A G LIHC 90110386 - 90110366 90110406 41 CCATCTCAGGTTGTTTTAACCATCACCAGCAAGGCCCAGAA CCATCTCAGGTTGTTTTAACCACCACCAGCAAGGCCCAGAA < 41bp 0.540605646167992 0.789504857147972 0.054110646 0.08640534 prediction 0.49779842195996 Functional Gain - URAHP ENSG00000222019 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:90110386 chr16:90110384 . . 0 23 hm5C_associated_SNPs_108675 0 0 0 0 1 URAHP chr16:90110397 3'AG 90110397 Downstream 14bp
chr1 175048551 175048551 1 + C A HNSC 175048550 + 175048530 175048570 41 CGAAGAGGGCAGGGAGGGCCCCGCCTGCGAGCGGCTGGCCT CGAAGAGGGCAGGGAGGGCCCAGCCTGCGAGCGGCTGGCCT < 41bp 0.501105607970864 0.749995708186047 0.35213 0.40123227 prediction 0.497780200430367 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175048550 chr1:175048551 synonymous SNV . 0 22 hm5C_associated_SNPs_108679 0 0 0 0 1 TNN chr1:175048469 3'AG 175048469 Downstream 83bp
chr4 123301332 123301332 1 + C T SKCM 123301331 + 123301311 123301351 41 GACAAAGACGATAACTACACCCACAGGATGGTCCTCAGAAA GACAAAGACGATAACTACACCTACAGGATGGTCCTCAGAAA < 41bp 0.519926271207424 0.768809039416569 0.008092344 0.012892842 prediction 0.49776553641829 Functional Gain - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123301331 chr4:123301332 synonymous SNV . 0 22 hm5C_associated_SNPs_108680 0 0 0 0 2 ADAD1 chr4:123301252 3'AG 123301252 Downstream 81bp
chr4 123301332 123301332 1 + C T SKCM 123301331 + 123301311 123301351 41 GACAAAGACGATAACTACACCCACAGGATGGTCCTCAGAAA GACAAAGACGATAACTACACCTACAGGATGGTCCTCAGAAA < 41bp 0.519926271207424 0.768809039416569 0.008092344 0.012892842 prediction 0.49776553641829 Functional Gain - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123301331 chr4:123301332 synonymous SNV . 0 22 hm5C_associated_SNPs_108680 0 0 0 0 2 ADAD1 chr4:123301396 5'GT 123301396 Upstream 65bp
chr11 15096663 15096663 1 + T A KIRP 15096659 + 15096639 15096679 41 CACTCAGTAAAGAGGACGCGCGCCTCCTGCTGGCTGCACTG CACTCAGTAAAGAGGACGCGCGCCACCTGCTGGCTGCACTG < 41bp 0.632925862235258 0.881806430028751 0.21147013 0.38916472 prediction 0.497761135586986 Functional Gain - CALCB ENSG00000175868 CDS Human protein_coding chr11:15096659 chr11:15096663 nonsynonymous SNV 0.866 2 25 hm5C_associated_SNPs_108683 0 0 0 0 2 CALCB chr11:15096607 3'AG 15096607 Downstream 57bp
chr11 15096663 15096663 1 + T A KIRP 15096659 + 15096639 15096679 41 CACTCAGTAAAGAGGACGCGCGCCTCCTGCTGGCTGCACTG CACTCAGTAAAGAGGACGCGCGCCACCTGCTGGCTGCACTG < 41bp 0.632925862235258 0.881806430028751 0.21147013 0.38916472 prediction 0.497761135586986 Functional Gain - CALCB ENSG00000175868 CDS Human protein_coding chr11:15096659 chr11:15096663 nonsynonymous SNV 0.866 2 25 hm5C_associated_SNPs_108683 0 0 0 0 2 CALCB chr11:15096744 5'GT 15096744 Upstream 82bp
chr9 135763794 135763794 1 + C G rs534480542 135763793 + 135763773 135763813 41 GAAAGAATGGATCGCCCACTCCGAGAAGTTGCCGCGCAAGG GAAAGAATGGATCGCCCACTCGGAGAAGTTGCCGCGCAAGG < 41bp 0.620292646133854 0.869163090603786 0.30047238 0.88359714 prediction 0.497740888939864 Functional Gain - SPACA9 ENSG00000165698 CDS Human protein_coding chr9:135763793 chr9:135763794 synonymous SNV . 0 22 hm5C_associated_SNPs_108685 0 0 1 0 1 SPACA9 chr9:135763824 5'GT 135763824 Upstream 31bp
chr4 89574092 89574092 1 + C G COAD 89574088 + 89574068 89574108 41 TAGGGAAGGAGTTCCCCTCCCAAGCCAGCCCACAGAGGGTG TAGGGAAGGAGTTCCCCTCCCAAGGCAGCCCACAGAGGGTG < 41bp 0.584801567967766 0.83367050617693 0.24076793 0.5515034 prediction 0.497737876418329 Functional Gain - HERC3 ENSG00000138641 CDS Human protein_coding chr4:89574088 chr4:89574092 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_108687 0 0 0 0 1 HERC3 chr4:89574020 3'AG 89574020 Downstream 73bp
chr1 205028229 205028229 1 + C A rs142502980 205028225 + 205028205 205028245 41 ATCCTAGGCTTGTCCTACCGCTGGCTCCTCAACGAGTTCCC ATCCTAGGCTTGTCCTACCGCTGGATCCTCAACGAGTTCCC < 41bp 0.330944913757006 0.748864149479147 0.026940733 0.084822 prediction 0.497728298958294 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205028225 chr1:205028229 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_108689 0 0 0 0 1 CNTN2 chr1:205028212 3'AG 205028212 Downstream 18bp
chr11 65048544 65048544 1 + C A UCEC 65048543 + 65048523 65048563 41 TCAGTGATTCTCGAGGGAGACCGGGAACATTCCTCGGGTGC TCAGTGATTCTCGAGGGAGACAGGGAACATTCCTCGGGTGC < 41bp 0.536074822486979 0.784937714705039 0.91646135 0.9331758 prediction 0.497725784436121 Functional Gain - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65048543 chr11:65048544 synonymous SNV . 0 22 hm5C_associated_SNPs_108690 0 0 1 0 2 POLA2 chr11:65048463 3'AG 65048463 Downstream 82bp
chr11 65048544 65048544 1 + C A UCEC 65048543 + 65048523 65048563 41 TCAGTGATTCTCGAGGGAGACCGGGAACATTCCTCGGGTGC TCAGTGATTCTCGAGGGAGACAGGGAACATTCCTCGGGTGC < 41bp 0.536074822486979 0.784937714705039 0.91646135 0.9331758 prediction 0.497725784436121 Functional Gain - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65048543 chr11:65048544 synonymous SNV . 0 22 hm5C_associated_SNPs_108690 0 0 1 0 2 POLA2 chr11:65048618 5'GT 65048618 Upstream 75bp
chr22 45110520 45110520 1 + C T SKCM 45110519 + 45110499 45110539 41 CAGCGCAAGGGGCTGCCCGACCAGGAGCTCTTCAGCCTCAA CAGCGCAAGGGGCTGCCCGACTAGGAGCTCTTCAGCCTCAA < 41bp 0.500813887989443 0.749676504040943 0.27846932 0.06974411 prediction 0.497725232103 Functional Gain - PRR5;PRR5-ARHGAP8 ENSG00000186654;ENSG00000241484;ENSG00000248405 CDS Human other chr22:45110519 chr22:45110520 stopgain 1.000 0 22 hm5C_associated_SNPs_108691 0 0 1 1 2 PRR5;PRR5-ARHGAP8 chr22:45110471 3'AG 45110471 Downstream 50bp
chr22 45110520 45110520 1 + C T SKCM 45110519 + 45110499 45110539 41 CAGCGCAAGGGGCTGCCCGACCAGGAGCTCTTCAGCCTCAA CAGCGCAAGGGGCTGCCCGACTAGGAGCTCTTCAGCCTCAA < 41bp 0.500813887989443 0.749676504040943 0.27846932 0.06974411 prediction 0.497725232103 Functional Gain - PRR5;PRR5-ARHGAP8 ENSG00000186654;ENSG00000241484;ENSG00000248405 CDS Human other chr22:45110519 chr22:45110520 stopgain 1.000 0 22 hm5C_associated_SNPs_108691 0 0 1 1 2 PRR5;PRR5-ARHGAP8 chr22:45110551 5'GT 45110551 Upstream 32bp
chr17 29036734 29036734 1 + C A rs540642135 29036730 + 29036710 29036750 41 CGCCACCTCCTACCAGCTTCCCCCCAGCCCCGGCTCCGGGA CGCCACCTCCTACCAGCTTCCCCCAAGCCCCGGCTCCGGGA < 41bp 0.36824802106819 0.74885860162581 0.02647236 0.10320553 prediction 0.497717203251621 Functional Gain - SUZ12P1 ENSG00000264538 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:29036730 chr17:29036734 . . 0 25 hm5C_associated_SNPs_108692 0 0 1 0 1 SUZ12P1 chr17:29036829 5'GT 29036829 Upstream 96bp
chr10 121662361 121662361 1 + T C UCEC 121662359 + 121662339 121662379 41 AGCAGCAGGTACCTGCCAGACCTGGGGCTCCCTCTGTTCAA AGCAGCAGGTACCTGCCAGACCCGGGGCTCCCTCTGTTCAA < 41bp 0.474817529877989 0.748858024143115 0.024424106 0.20975605 prediction 0.497716048286229 Functional Gain - SEC23IP ENSG00000107651 CDS Human protein_coding chr10:121662359 chr10:121662361 synonymous SNV . 0 23 hm5C_associated_SNPs_108693 0 0 1 0 1 SEC23IP chr10:121662311 3'AG 121662311 Downstream 51bp
chr19 56166479 56166479 1 + C G UCEC 56166475 + 56166455 56166495 41 ACGCGGCCGCCTCAGCATGTCGGACTTCGACGAGTTCGAGC ACGCGGCCGCCTCAGCATGTCGGAGTTCGACGAGTTCGAGC < 41bp 0.565733894996105 0.814583066227367 0.40926996 0.9040623 prediction 0.497698342462524 Functional Gain - U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56166475 chr19:56166479 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_108694 0 0 1 0 1 U2AF2 chr19:56166519 5'GT 56166519 Upstream 41bp
chr1 110998864 110998864 1 + T C UCEC 110998862 + 110998842 110998882 41 TTCTCTCCTTAGGTCCCCTTCTTCAGGAAACGCAAGCACCA TTCTCTCCTTAGGTCCCCTTCTCCAGGAAACGCAAGCACCA < 41bp 0.570404956992922 0.819239353559101 0.08633274 0.9213087 prediction 0.497668793132358 Functional Gain - PROK1 ENSG00000143125 CDS Human protein_coding chr1:110998862 chr1:110998864 nonsynonymous SNV 0.291 0 23 hm5C_associated_SNPs_108697 0 0 0 0 1 PROK1 chr1:110998854 3'AG 110998854 Downstream 11bp
chr1 154962903 154962903 1 + C T SKCM 154962902 + 154962882 154962922 41 CACCCCCAGCTGGAGGCTGTCCTTATGGGCACCCGCCGGAC CACCCCCAGCTGGAGGCTGTCTTTATGGGCACCCGCCGGAC < 41bp 0.497065073689977 0.748833840142089 0.08482057 0.22511214 prediction 0.497667680284179 Functional Gain - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962902 chr1:154962903 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_108698 0 0 1 0 1 FLAD1 chr1:154962815 3'AG 154962815 Downstream 89bp
chr6 52268045 52268045 1 + C A STAD 52268041 + 52268021 52268061 41 GCCATCTTGGAGCGCCTGAGCACCCTGTCGGTCAGCGGGCA GCCATCTTGGAGCGCCTGAGCACCATGTCGGTCAGCGGGCA < 41bp 0.669199710628144 0.918030891506883 0.24746114 0.22648084 prediction 0.497662361757477 Functional Gain - PAQR8 ENSG00000170915 CDS Human protein_coding chr6:52268041 chr6:52268045 nonsynonymous SNV 0.958 4 25 hm5C_associated_SNPs_108700 0 0 1 0 1 PAQR8 chr6:52267960 3'AG 52267960 Downstream 86bp
chr16 72141583 72141583 1 + C T LUAD 72141582 + 72141562 72141602 41 GGCGGCTGATGGTGGAGTTCCCGCTGGACCCTGCCCTGTCC GGCGGCTGATGGTGGAGTTCCTGCTGGACCCTGCCCTGTCC < 41bp 0.493249149340346 0.748793049715543 0.35153052 0.2375099 prediction 0.497586099431086 Functional Gain - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72141582 chr16:72141583 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_108702 0 0 1 0 1 DHX38 chr16:72141544 3'AG 72141544 Downstream 40bp
chr22 31523968 31523968 1 + C T COAD 31523967 + 31523947 31523987 41 TGGTTCGGGGACCTGAACTTCCGCATTGAGAGCTATGACCT TGGTTCGGGGACCTGAACTTCTGCATTGAGAGCTATGACCT < 41bp 0.526357690771241 0.77514445786609 0.101778865 0.5621404 prediction 0.497573534189698 Functional Gain - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31523967 chr22:31523968 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_108703 0 0 0 0 2 INPP5J chr22:31523937 3'AG 31523937 Downstream 32bp
chr22 31523968 31523968 1 + C T COAD 31523967 + 31523947 31523987 41 TGGTTCGGGGACCTGAACTTCCGCATTGAGAGCTATGACCT TGGTTCGGGGACCTGAACTTCTGCATTGAGAGCTATGACCT < 41bp 0.526357690771241 0.77514445786609 0.101778865 0.5621404 prediction 0.497573534189698 Functional Gain - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31523967 chr22:31523968 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_108703 0 0 0 0 2 INPP5J chr22:31524048 5'GT 31524048 Upstream 81bp
chr13 30054481 30054481 1 + C G rs376426921 30054480 + 30054460 30054500 41 GGTGACCAGCTGCTGAGCATCCGGTGTCAACACCAGGAGCA GGTGACCAGCTGCTGAGCATCGGGTGTCAACACCAGGAGCA < 41bp 0.598058612116228 0.8468381279423 0.8981757 0.92933214 prediction 0.497559031652145 Functional Gain - MTUS2 ENSG00000132938 CDS Human protein_coding chr13:30054480 chr13:30054481 nonsynonymous SNV 0.529 0 22 hm5C_associated_SNPs_108705 0 0 0 0 1 MTUS2 chr13:30054501 5'GT 30054501 Upstream 21bp
chr1 46650927 46650927 1 + C A THCA 46650926 + 46650906 46650946 41 AATCAGCTTTTGTATGACATCCGAACTAATGCAGTCACCGT AATCAGCTTTTGTATGACATCAGAACTAATGCAGTCACCGT < 41bp 0.521608358224989 0.770377438528465 0.13580188 0.31807256 prediction 0.497538160606951 Functional Gain - TSPAN1 ENSG00000117472 CDS Human protein_coding chr1:46650926 chr1:46650927 synonymous SNV . 0 22 hm5C_associated_SNPs_108706 0 0 0 0 1 TSPAN1 chr1:46650980 5'GT 46650980 Upstream 54bp
chr8 15531303 15531303 1 + T C COAD 15531301 + 15531281 15531321 41 GCCAGATGTGGAACCATATCCGTGGACCTCCATATGCTCAT GCCAGATGTGGAACCATATCCGCGGACCTCCATATGCTCAT < 41bp 0.571765338245315 0.82052703735575 0.47334975 0.9123713 prediction 0.49752339822087 Functional Gain - TUSC3 ENSG00000104723 CDS Human protein_coding chr8:15531301 chr8:15531303 synonymous SNV . 0 23 hm5C_associated_SNPs_108709 0 0 1 0 1 TUSC3 chr8:15531345 5'GT 15531345 Upstream 43bp
chr19 15770043 15770043 1 + C A STAD 15770039 + 15770019 15770059 41 CCCTCCCCAAGGAACTGCATCGGGCAGGCGTTCGCGATGGC CCCTCCCCAAGGAACTGCATCGGGAAGGCGTTCGCGATGGC < 41bp 0.668567616707649 0.917328379320099 0.6945586 0.9007088 prediction 0.4975215252249 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15770039 chr19:15770043 nonsynonymous SNV 0.044 1 25 hm5C_associated_SNPs_108710 0 0 1 0 1 CYP4F3 chr19:15770030 3'AG 15770030 Downstream 14bp
chr4 158065038 158065038 1 + T A rs12507409 158065034 + 158065014 158065054 41 CATGATGGGGGTCTACGCCCCAACTCTGCTCATTGTTGTTC CATGATGGGGGTCTACGCCCCAACACTGCTCATTGTTGTTC < 41bp 0.421160875309082 0.748751699768307 0.094754755 0.2318148 prediction 0.497503399536614 Functional Gain - GLRB ENSG00000109738 CDS Human protein_coding chr4:158065034 chr4:158065038 synonymous SNV . 0 25 hm5C_associated_SNPs_108711 0 0 0 0 2 GLRB chr4:158064959 3'AG 158064959 Downstream 80bp
chr4 158065038 158065038 1 + T A rs12507409 158065034 + 158065014 158065054 41 CATGATGGGGGTCTACGCCCCAACTCTGCTCATTGTTGTTC CATGATGGGGGTCTACGCCCCAACACTGCTCATTGTTGTTC < 41bp 0.421160875309082 0.748751699768307 0.094754755 0.2318148 prediction 0.497503399536614 Functional Gain - GLRB ENSG00000109738 CDS Human protein_coding chr4:158065034 chr4:158065038 synonymous SNV . 0 25 hm5C_associated_SNPs_108711 0 0 0 0 2 GLRB chr4:158065111 5'GT 158065111 Upstream 74bp
chr20 36997774 36997774 1 + T A STAD 36997770 + 36997750 36997790 41 GATGCCTTTGTGCTCCTGCCCAGCTCCAGCAAGGAGCCTGT GATGCCTTTGTGCTCCTGCCCAGCACCAGCAAGGAGCCTGT < 41bp 0.420110970889718 0.748748532768219 0.055170447 0.0805434 prediction 0.497497065536437 Functional Gain - LBP ENSG00000129988 CDS Human protein_coding chr20:36997770 chr20:36997774 nonsynonymous SNV 0.027 3 25 hm5C_associated_SNPs_108712 0 0 0 0 1 LBP chr20:36997806 5'GT 36997806 Upstream 33bp
chr7 101960859 101960859 1 + C A UCEC 101960855 + 101960835 101960875 41 ACGTACAGCATCTGTGGTTCCAGTCTGTGCTTGACATGCTC ACGTACAGCATCTGTGGTTCCAGTATGTGCTTGACATGCTC < 41bp 0.345338175829826 0.748735748497508 0.041035414 0.14929515 prediction 0.497471496995016 Functional Gain - SH2B2 ENSG00000160999 CDS Human protein_coding chr7:101960855 chr7:101960859 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_108714 0 0 0 0 1 SH2B2 chr7:101960798 3'AG 101960798 Downstream 62bp
chr8 27296617 27296617 1 + C T SKCM 27296616 + 27296596 27296636 41 GCTGGGGGACTTTGGTCTTTCCCGGTACATTGAGGACGAGG GCTGGGGGACTTTGGTCTTTCTCGGTACATTGAGGACGAGG < 41bp 0.505485906966895 0.754214172223531 0.26693708 0.1896429 prediction 0.49745653051327 Functional Gain - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27296616 chr8:27296617 synonymous SNV . 0 22 hm5C_associated_SNPs_108716 0 0 1 0 2 PTK2B chr8:27296548 3'AG 27296548 Downstream 70bp
chr8 27296617 27296617 1 + C T SKCM 27296616 + 27296596 27296636 41 GCTGGGGGACTTTGGTCTTTCCCGGTACATTGAGGACGAGG GCTGGGGGACTTTGGTCTTTCTCGGTACATTGAGGACGAGG < 41bp 0.505485906966895 0.754214172223531 0.26693708 0.1896429 prediction 0.49745653051327 Functional Gain - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27296616 chr8:27296617 synonymous SNV . 0 22 hm5C_associated_SNPs_108716 0 0 1 0 2 PTK2B chr8:27296648 5'GT 27296648 Upstream 32bp
chr8 99019805 99019805 1 + C T SKCM 99019804 + 99019784 99019824 41 TGTCCTGAGGGACACGTGCTCCGCAGCGATGGGAAGACGTG TGTCCTGAGGGACACGTGCTCTGCAGCGATGGGAAGACGTG < 41bp 0.524182824247886 0.772879265930072 0.15672863 0.23069525 prediction 0.497392883364372 Functional Gain - MATN2 ENSG00000132561 CDS Human protein_coding chr8:99019804 chr8:99019805 nonsynonymous SNV 0.804 3 22 hm5C_associated_SNPs_108721 0 0 0 0 2 MATN2 chr8:99019707 3'AG 99019707 Downstream 99bp
chr8 99019805 99019805 1 + C T SKCM 99019804 + 99019784 99019824 41 TGTCCTGAGGGACACGTGCTCCGCAGCGATGGGAAGACGTG TGTCCTGAGGGACACGTGCTCTGCAGCGATGGGAAGACGTG < 41bp 0.524182824247886 0.772879265930072 0.15672863 0.23069525 prediction 0.497392883364372 Functional Gain - MATN2 ENSG00000132561 CDS Human protein_coding chr8:99019804 chr8:99019805 nonsynonymous SNV 0.804 3 22 hm5C_associated_SNPs_108721 0 0 0 0 2 MATN2 chr8:99019829 5'GT 99019829 Upstream 25bp
chr11 60156939 60156939 1 + T C rs143804329 60156937 + 60156917 60156957 41 CTCTTCCTCCTTGCTGACAGCATGGTAGCCCTGAGGACTGC CTCTTCCTCCTTGCTGACAGCACGGTAGCCCTGAGGACTGC < 41bp 0.528046756403575 0.77673544811871 0.28831178 0.2754256 prediction 0.497377383430271 Functional Gain - MS4A7 ENSG00000166927 CDS Human protein_coding chr11:60156937 chr11:60156939 nonsynonymous SNV 0.005 1 23 hm5C_associated_SNPs_108723 0 0 0 0 1 MS4A7 chr11:60156863 3'AG 60156863 Downstream 77bp
chr5 150844708 150844708 1 + C T GBM 150844707 + 150844687 150844727 41 TCCAGCCCCTGCTCCTGGCTCCGGAACCACGCACACTGGGG TCCAGCCCCTGCTCCTGGCTCTGGAACCACGCACACTGGGG < 41bp 0.52182091374152 0.770506572859747 0.2304362 0.19336969 prediction 0.497371318236453 Functional Gain - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150844707 chr5:150844708 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_108724 0 0 1 0 2 SLC36A1 chr5:150844635 3'AG 150844635 Downstream 74bp
chr5 150844708 150844708 1 + C T GBM 150844707 + 150844687 150844727 41 TCCAGCCCCTGCTCCTGGCTCCGGAACCACGCACACTGGGG TCCAGCCCCTGCTCCTGGCTCTGGAACCACGCACACTGGGG < 41bp 0.52182091374152 0.770506572859747 0.2304362 0.19336969 prediction 0.497371318236453 Functional Gain - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150844707 chr5:150844708 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_108724 0 0 1 0 2 SLC36A1 chr5:150844730 5'GT 150844730 Upstream 23bp
chr1 156761543 156761543 1 + C A rs35929266 156761542 + 156761522 156761562 41 GACCCGGCCCTGGTCCCCCCCCAGGAAATTGCCCCAGATGC GACCCGGCCCTGGTCCCCCCCAAGGAAATTGCCCCAGATGC < 41bp 0.527312623605381 0.775987609835905 0.11845347 0.26239812 prediction 0.497349972461049 Functional Gain - PRCC ENSG00000143294 CDS Human protein_coding chr1:156761542 chr1:156761543 nonsynonymous SNV 0.986 1 22 hm5C_associated_SNPs_108725 0 0 1 0 2 PRCC chr1:156761489 3'AG 156761489 Downstream 55bp
chr1 156761543 156761543 1 + C A rs35929266 156761542 + 156761522 156761562 41 GACCCGGCCCTGGTCCCCCCCCAGGAAATTGCCCCAGATGC GACCCGGCCCTGGTCCCCCCCAAGGAAATTGCCCCAGATGC < 41bp 0.527312623605381 0.775987609835905 0.11845347 0.26239812 prediction 0.497349972461049 Functional Gain - PRCC ENSG00000143294 CDS Human protein_coding chr1:156761542 chr1:156761543 nonsynonymous SNV 0.986 1 22 hm5C_associated_SNPs_108725 0 0 1 0 2 PRCC chr1:156761584 5'GT 156761584 Upstream 42bp
chr1 22973751 22973751 1 + C G rs148662464 22973750 + 22973730 22973770 41 CATTCCCGGGATCCGAGGACCCAAAGGGCAGAAGGGAGAAC CATTCCCGGGATCCGAGGACCGAAAGGGCAGAAGGGAGAAC < 41bp 0.430585045117672 0.748672404316547 0.3211077 0.6595633 prediction 0.497344808633094 Functional Gain - C1QC ENSG00000159189 CDS Human protein_coding chr1:22973750 chr1:22973751 synonymous SNV . 0 22 hm5C_associated_SNPs_108727 0 0 0 0 1 C1QC chr1:22973720 3'AG 22973720 Downstream 32bp
chr1 158262102 158262102 1 + C A LUAD 158262101 + 158262081 158262121 41 ATCTCATAAGAAGCACTTGCCCCCGATTTCTCTTGGGTCTC ATCTCATAAGAAGCACTTGCCACCGATTTCTCTTGGGTCTC < 41bp 0.498357911409013 0.748668236928158 0.01586765 0.027242512 prediction 0.497336473856316 Functional Gain - CD1C ENSG00000158481 CDS Human protein_coding chr1:158262101 chr1:158262102 nonsynonymous SNV 0.013 3 22 hm5C_associated_SNPs_108729 0 0 0 0 1 CD1C chr1:158262155 5'GT 158262155 Upstream 54bp
chr17 62461656 62461656 1 + C A rs191086352 62461652 + 62461632 62461672 41 ATGCAAATATCCTTGAAAAACAAGCAAGTAAGAGAACTTTG ATGCAAATATCCTTGAAAAACAAGAAAGTAAGAGAACTTTG < 41bp 0.395306543022261 0.748632312670892 0.3493973 0.2855658 prediction 0.497264625341785 Functional Gain - MILR1 ENSG00000271605 CDS Human protein_coding chr17:62461652 chr17:62461656 unknown 0.008 0 25 hm5C_associated_SNPs_108731 0 0 0 0 1 MILR1 chr17:62461658 5'GT 62461658 Upstream 3bp
chr3 20167584 20167584 1 + T G STAD 20167582 + 20167562 20167602 41 CCCCGAATGCCAAAAGAATACATCACACGGCTCGTCTTTGA CCCCGAATGCCAAAAGAATACAGCACACGGCTCGTCTTTGA < 41bp 0.631312667080643 0.879931213168633 0.025806725 0.080835074 prediction 0.497237092175981 Functional Gain - KAT2B ENSG00000114166 CDS Human protein_coding chr3:20167582 chr3:20167584 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_108733 0 0 1 0 1 KAT2B chr3:20167605 5'GT 20167605 Upstream 22bp
chr10 1042091 1042091 1 + C A BLCA 1042087 + 1042067 1042107 41 ACTGATGAAGTATGGCGACTCTCTCTACCGCTGCAAACAGC ACTGATGAAGTATGGCGACTCTCTATACCGCTGCAAACAGC < 41bp 0.318531083507906 0.748603898594674 0.31351373 0.93165034 prediction 0.497207797189349 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1042087 chr10:1042091 synonymous SNV . 0 25 hm5C_associated_SNPs_108735 0 0 1 0 1 GTPBP4 chr10:1042182 5'GT 1042182 Upstream 92bp
chr3 128621442 128621442 1 + T G UCEC 128621440 + 128621420 128621460 41 GGCCGGTTCAGCATGGGCAGCGTCGTGGCTGGGCTGCTCAA GGCCGGTTCAGCATGGGCAGCGGCGTGGCTGGGCTGCTCAA < 41bp 0.390864042433573 0.748601481260432 0.12906516 0.41384906 prediction 0.497202962520864 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128621440 chr3:128621442 nonsynonymous SNV 0.087 1 23 hm5C_associated_SNPs_108736 0 0 1 0 3 ACAD9 chr3:128621396 3'AG 128621396 Downstream 47bp
chr3 128621442 128621442 1 + T G UCEC 128621440 + 128621420 128621460 41 GGCCGGTTCAGCATGGGCAGCGTCGTGGCTGGGCTGCTCAA GGCCGGTTCAGCATGGGCAGCGGCGTGGCTGGGCTGCTCAA < 41bp 0.390864042433573 0.748601481260432 0.12906516 0.41384906 prediction 0.497202962520864 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128621440 chr3:128621442 nonsynonymous SNV 0.087 1 23 hm5C_associated_SNPs_108736 0 0 1 0 3 ACAD9 chr3:128621471 5'GT 128621471 Upstream 30bp
chr3 128621442 128621442 1 + T G UCEC 128621440 + 128621420 128621460 41 GGCCGGTTCAGCATGGGCAGCGTCGTGGCTGGGCTGCTCAA GGCCGGTTCAGCATGGGCAGCGGCGTGGCTGGGCTGCTCAA < 41bp 0.390864042433573 0.748601481260432 0.12906516 0.41384906 prediction 0.497202962520864 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128621440 chr3:128621442 nonsynonymous SNV 0.087 1 23 hm5C_associated_SNPs_108736 0 0 1 0 3 ACAD9 chr3:128621475 5'GT 128621475 Upstream 34bp
chr17 33507607 33507607 1 + C T SKCM 33507606 + 33507586 33507626 41 TCTTTAAGGAGAGGGCCTTGCCAGACATCGAGAACTACATG TCTTTAAGGAGAGGGCCTTGCTAGACATCGAGAACTACATG < 41bp 0.501624559685032 0.750219409435626 0.27890366 0.12389144 prediction 0.497189699501188 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33507606 chr17:33507607 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_108738 0 0 0 0 2 UNC45B chr17:33507578 3'AG 33507578 Downstream 30bp
chr17 33507607 33507607 1 + C T SKCM 33507606 + 33507586 33507626 41 TCTTTAAGGAGAGGGCCTTGCCAGACATCGAGAACTACATG TCTTTAAGGAGAGGGCCTTGCTAGACATCGAGAACTACATG < 41bp 0.501624559685032 0.750219409435626 0.27890366 0.12389144 prediction 0.497189699501188 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33507606 chr17:33507607 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_108738 0 0 0 0 2 UNC45B chr17:33507695 5'GT 33507695 Upstream 89bp
chr16 67262903 67262903 1 + C A UCEC 67262902 + 67262882 67262922 41 CCAGGCCGGGCCCTTTACCTCCTGTGGGTGAATGTGCTGGG CCAGGCCGGGCCCTTTACCTCATGTGGGTGAATGTGCTGGG < 41bp 0.494200475837292 0.748594759478976 0.22887939 0.84650624 prediction 0.497189518957953 Functional Gain - TMEM208 ENSG00000168701 CDS Human protein_coding chr16:67262902 chr16:67262903 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_108739 0 0 1 0 1 TMEM208 chr16:67262879 3'AG 67262879 Downstream 25bp
chr2 239237974 239237974 1 + T C rs17854985 239237972 + 239237952 239237992 41 AGAACAGAGAGCATGACAAACCTGAGAAAAAGGTAAAGTCT AGAACAGAGAGCATGACAAACCCGAGAAAAAGGTAAAGTCT < 41bp 0.515009854214579 0.763599729805022 0.1892741 0.24585024 prediction 0.497179751180885 Functional Gain - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239237972 chr2:239237974 synonymous SNV . 0 23 hm5C_associated_SNPs_108741 0 0 1 0 1 TRAF3IP1 chr2:239237983 5'GT 239237983 Upstream 10bp
chrX 129060060 129060060 1 + C T SKCM 129060059 + 129060039 129060079 41 GGCGAGTGGGGTGGTGTGGGCCTAAAGCCCAGTGCCAAGAA GGCGAGTGGGGTGGTGTGGGCTTAAAGCCCAGTGCCAAGAA < 41bp 0.498885780696755 0.748581041290388 0.39487752 0.44316188 prediction 0.497162082580776 Functional Gain - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129060059 chrX:129060060 synonymous SNV . 0 22 hm5C_associated_SNPs_108743 0 0 1 0 1 UTP14A chrX:129060088 5'GT 129060088 Upstream 29bp
chr15 76632832 76632832 1 + C G LUAD 76632828 + 76632808 76632848 41 ATCCGCGTCTGGTTCCAGAACAAGCGCTGCAAGGACAAGAA ATCCGCGTCTGGTTCCAGAACAAGGGCTGCAAGGACAAGAA < 41bp 0.457933366596008 0.748564697031584 0.8737646 0.8958529 prediction 0.497129394063168 Functional Gain - ISL2 ENSG00000159556 CDS Human protein_coding chr15:76632828 chr15:76632832 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_108747 0 0 1 0 1 ISL2 chr15:76632900 5'GT 76632900 Upstream 69bp
chr11 64938958 64938958 1 + C A UCEC 64938954 + 64938934 64938974 41 CAGCACCAGGAGGTCCAGGCCTTCCTCAGCCTTCTGGGTGA CAGCACCAGGAGGTCCAGGCCTTCATCAGCCTTCTGGGTGA < 41bp 0.335193778819458 0.748555633489366 0.24191856 0.6919531 prediction 0.497111266978731 Functional Gain - SPDYC ENSG00000204710 CDS Human protein_coding chr11:64938954 chr11:64938958 nonsynonymous SNV 0.981 0 25 hm5C_associated_SNPs_108748 0 0 0 0 1 SPDYC chr11:64938970 5'GT 64938970 Upstream 13bp
chr16 81303980 81303980 1 + C T SKCM 81303979 + 81303959 81303999 41 AACTCCAGGCTCACCTCGGTCCCCACCCTCAGGAGGTTTGC AACTCCAGGCTCACCTCGGTCTCCACCCTCAGGAGGTTTGC < 41bp 0.475081515947012 0.748554917593674 0.01970172 0.8479321 prediction 0.497109835187349 Functional Gain - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81303979 chr16:81303980 nonsynonymous SNV 0.142 4 22 hm5C_associated_SNPs_108750 0 0 0 0 1 BCO1 chr16:81304021 5'GT 81304021 Upstream 42bp
chr22 24123393 24123393 1 + C A LUSC 24123392 + 24123372 24123412 41 CACCCCAGCCAGACGCCCCGCCAGATGCCTGTGAGGCCTCC CACCCCAGCCAGACGCCCCGCAAGATGCCTGTGAGGCCTCC < 41bp 0.521833238935257 0.770380800508333 0.40145323 0.07733813 prediction 0.497095123146153 Functional Gain - MMP11 ENSG00000099953 CDS Human protein_coding chr22:24123392 chr22:24123393 nonsynonymous SNV 0.879 4 22 hm5C_associated_SNPs_108751 0 0 1 1 1 MMP11 chr22:24123380 3'AG 24123380 Downstream 14bp
chr8 24349484 24349484 1 + C G COAD 24349480 + 24349460 24349500 41 TGATTTTCCTGAGATGTGCACTGGCCACTCGCCTGCCTGTC TGATTTTCCTGAGATGTGCACTGGGCACTCGCCTGCCTGTC < 41bp 0.450987040420628 0.748520689009838 0.67608666 0.76566243 prediction 0.497041378019675 Functional Gain - ADAM7 ENSG00000069206 CDS Human protein_coding chr8:24349480 chr8:24349484 synonymous SNV . 0 25 hm5C_associated_SNPs_108755 0 0 0 0 1 ADAM7 chr8:24349416 3'AG 24349416 Downstream 69bp
chr22 40365465 40365465 1 + C A LUAD 40365461 + 40365441 40365481 41 AAATGATGGGCATTGTGGCACCGGCTTGGGCAGTGAAATGA AAATGATGGGCATTGTGGCACCGGATTGGGCAGTGAAATGA < 41bp 0.342851024090549 0.748497893567697 0.21133873 0.29841405 prediction 0.496995787135395 Functional Gain - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40365461 chr22:40365465 synonymous SNV . 0 25 hm5C_associated_SNPs_108758 0 0 1 0 2 GRAP2 chr22:40365415 3'AG 40365415 Downstream 51bp
chr22 40365465 40365465 1 + C A LUAD 40365461 + 40365441 40365481 41 AAATGATGGGCATTGTGGCACCGGCTTGGGCAGTGAAATGA AAATGATGGGCATTGTGGCACCGGATTGGGCAGTGAAATGA < 41bp 0.342851024090549 0.748497893567697 0.21133873 0.29841405 prediction 0.496995787135395 Functional Gain - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40365461 chr22:40365465 synonymous SNV . 0 25 hm5C_associated_SNPs_108758 0 0 1 0 2 GRAP2 chr22:40365537 5'GT 40365537 Upstream 73bp
chr2 27560185 27560185 1 + C A LUSC 27560184 + 27560164 27560204 41 AAACAATGGAGACTTCTCCTCCTGGGGCAGGTAGGGAGCGG AAACAATGGAGACTTCTCCTCATGGGGCAGGTAGGGAGCGG < 41bp 0.524113470673958 0.772609912056645 0.71990865 0.8615804 prediction 0.496992882765375 Functional Gain - GTF3C2 ENSG00000115207 CDS Human protein_coding chr2:27560184 chr2:27560185 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_108759 0 0 0 0 1 GTF3C2 chr2:27560193 5'GT 27560193 Upstream 9bp
chr17 79080642 79080642 1 + C T SKCM 79080641 + 79080621 79080661 41 GGCGCCGCCTCCCGGGCCTTCCCCGCCCAGACGGCCAGCGG GGCGCCGCCTCCCGGGCCTTCTCCGCCCAGACGGCCAGCGG < 41bp 0.513931322022297 0.762417285873804 0.17559919 0.2331818 prediction 0.496971927703016 Functional Gain - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080641 chr17:79080642 nonsynonymous SNV 0.433 0 22 hm5C_associated_SNPs_108762 0 0 1 0 2 BAIAP2 chr17:79080545 3'AG 79080545 Downstream 98bp
chr17 79080642 79080642 1 + C T SKCM 79080641 + 79080621 79080661 41 GGCGCCGCCTCCCGGGCCTTCCCCGCCCAGACGGCCAGCGG GGCGCCGCCTCCCGGGCCTTCTCCGCCCAGACGGCCAGCGG < 41bp 0.513931322022297 0.762417285873804 0.17559919 0.2331818 prediction 0.496971927703016 Functional Gain - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080641 chr17:79080642 nonsynonymous SNV 0.433 0 22 hm5C_associated_SNPs_108762 0 0 1 0 2 BAIAP2 chr17:79080707 5'GT 79080707 Upstream 66bp
chr6 160198428 160198428 1 + C T UCEC 160198427 + 160198407 160198447 41 AGCACGGATAGTTTCCTGGTCCCAAGTGGGTGTGGAGCCTT AGCACGGATAGTTTCCTGGTCTCAAGTGGGTGTGGAGCCTT < 41bp 0.548973869192575 0.797456348445885 0.020332605 0.022590637 prediction 0.49696495850662 Functional Gain - ACAT2 ENSG00000120437 CDS Human protein_coding chr6:160198427 chr6:160198428 synonymous SNV . 0 22 hm5C_associated_SNPs_108763 0 0 1 0 2 ACAT2 chr6:160198334 3'AG 160198334 Downstream 95bp
chr6 160198428 160198428 1 + C T UCEC 160198427 + 160198407 160198447 41 AGCACGGATAGTTTCCTGGTCCCAAGTGGGTGTGGAGCCTT AGCACGGATAGTTTCCTGGTCTCAAGTGGGTGTGGAGCCTT < 41bp 0.548973869192575 0.797456348445885 0.020332605 0.022590637 prediction 0.49696495850662 Functional Gain - ACAT2 ENSG00000120437 CDS Human protein_coding chr6:160198427 chr6:160198428 synonymous SNV . 0 22 hm5C_associated_SNPs_108763 0 0 1 0 2 ACAT2 chr6:160198488 5'GT 160198488 Upstream 61bp
chr20 20257890 20257890 1 + C A LUSC 20257886 + 20257866 20257906 41 TTAAACCTTGGCGTGAGCGGCAGCCGCATCCACCTCGTGCA TTAAACCTTGGCGTGAGCGGCAGCAGCATCCACCTCGTGCA < 41bp 0.344583605866951 0.7484719165981 0.82683074 0.7799337 prediction 0.4969438331962 Functional Gain - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20257886 chr20:20257890 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_108765 0 0 0 0 1 CFAP61 chr20:20257810 3'AG 20257810 Downstream 81bp
chr3 130318621 130318621 1 + C A rs112135798 130318617 + 130318597 130318637 41 ACAGGGCAGAAGAGGCTGGCCAGGCCCCCCCGGGACACCAG ACAGGGCAGAAGAGGCTGGCCAGGACCCCCCGGGACACCAG < 41bp 0.354266442414678 0.748454721760214 0.6011668 0.65699565 prediction 0.496909443520427 Functional Gain - COL6A6 ENSG00000206384 CDS Human protein_coding chr3:130318617 chr3:130318621 synonymous SNV . 0 25 hm5C_associated_SNPs_108766 0 0 0 0 2 COL6A6 chr3:130318601 3'AG 130318601 Downstream 21bp
chr3 130318621 130318621 1 + C A rs112135798 130318617 + 130318597 130318637 41 ACAGGGCAGAAGAGGCTGGCCAGGCCCCCCCGGGACACCAG ACAGGGCAGAAGAGGCTGGCCAGGACCCCCCGGGACACCAG < 41bp 0.354266442414678 0.748454721760214 0.6011668 0.65699565 prediction 0.496909443520427 Functional Gain - COL6A6 ENSG00000206384 CDS Human protein_coding chr3:130318617 chr3:130318621 synonymous SNV . 0 25 hm5C_associated_SNPs_108766 0 0 0 0 2 COL6A6 chr3:130318654 5'GT 130318654 Upstream 34bp
chr11 66238762 66238762 1 + C G rs200291371 66238761 + 66238741 66238781 41 AAGGGCCGCCGGCGAAGCCGCCTGGCACTGAGCCGCCGGTC AAGGGCCGCCGGCGAAGCCGCGTGGCACTGAGCCGCCGGTC < 41bp 0.418969537766013 0.748446602058407 0.591721 0.8872056 prediction 0.496893204116814 Functional Gain - PELI3 ENSG00000174516 CDS Human protein_coding chr11:66238761 chr11:66238762 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_108768 0 0 0 0 1 PELI3 chr11:66238713 3'AG 66238713 Downstream 50bp
chr18 72168607 72168607 1 + C G rs151185140 72168606 + 72168586 72168626 41 TCCAGAGTGTGTCTGCGTGGCCGGAGAAGAGAGGCGAAATC TCCAGAGTGTGTCTGCGTGGCGGGAGAAGAGAGGCGAAATC < 41bp 0.616211130949682 0.864650312215919 0.7193495 0.83035827 prediction 0.496878362532474 Functional Gain - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72168606 chr18:72168607 nonsynonymous SNV 0.913 4 22 hm5C_associated_SNPs_108770 0 0 1 0 1 CNDP2 chr18:72168564 3'AG 72168564 Downstream 44bp
chrX 69646233 69646233 1 + C T UCEC 69646232 + 69646212 69646252 41 GCCCCCCAGGTGCTGCTGCTCCTCATTATGCTGCTTGTGGC GCCCCCCAGGTGCTGCTGCTCTTCATTATGCTGCTTGTGGC < 41bp 0.48762900976481 0.74843889773563 0.03897664 0.10457587 prediction 0.49687779547126 Functional Gain - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69646232 chrX:69646233 nonsynonymous SNV 0.995 0 22 hm5C_associated_SNPs_108771 0 0 0 0 2 GDPD2 chrX:69646221 3'AG 69646221 Downstream 13bp
chrX 69646233 69646233 1 + C T UCEC 69646232 + 69646212 69646252 41 GCCCCCCAGGTGCTGCTGCTCCTCATTATGCTGCTTGTGGC GCCCCCCAGGTGCTGCTGCTCTTCATTATGCTGCTTGTGGC < 41bp 0.48762900976481 0.74843889773563 0.03897664 0.10457587 prediction 0.49687779547126 Functional Gain - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69646232 chrX:69646233 nonsynonymous SNV 0.995 0 22 hm5C_associated_SNPs_108771 0 0 0 0 2 GDPD2 chrX:69646319 5'GT 69646319 Upstream 87bp
chr16 31368670 31368670 1 + C A LUSC 31368669 + 31368649 31368689 41 ACCCAGCTCACCCAGAGGCTCCCGGTGTCCAGGCAGGGTGA ACCCAGCTCACCCAGAGGCTCACGGTGTCCAGGCAGGGTGA < 41bp 0.544469166168778 0.792905023840262 0.34943736 0.3363716 prediction 0.496871715342968 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31368669 chr16:31368670 nonsynonymous SNV 0.010 3 22 hm5C_associated_SNPs_108772 0 0 0 0 1 ITGAX chr16:31368574 3'AG 31368574 Downstream 97bp
chr20 21689923 21689923 1 + C G rs148928178 21689919 + 21689899 21689939 41 GCCTGCGCCTACCCGGCCTCCAACCAGCACGGCGTGTACAG GCCTGCGCCTACCCGGCCTCCAACGAGCACGGCGTGTACAG < 41bp 0.4682386559399 0.748419014296633 0.12289742 0.12745893 prediction 0.496838028593267 Functional Gain - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21689919 chr20:21689923 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_108775 0 0 0 0 1 PAX1 chr20:21689860 3'AG 21689860 Downstream 64bp
chr11 36057768 36057768 1 + C A OV 36057764 + 36057744 36057784 41 CTGGCAGTGTGACGGGCTGCCTGACTGCTTCGACAAGAGTG CTGGCAGTGTGACGGGCTGCCTGAATGCTTCGACAAGAGTG < 41bp 0.343001256163227 0.748401098027665 0.025529504 0.10139266 prediction 0.496802196055329 Functional Gain - LDLRAD3 ENSG00000179241 CDS Human protein_coding chr11:36057764 chr11:36057768 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_108777 0 0 1 0 1 LDLRAD3 chr11:36057799 5'GT 36057799 Upstream 32bp
chr19 16799018 16799018 1 + C T SKCM 16799017 + 16798997 16799037 41 GCCCTGGAGGGCTACATCTGCCCCGTGCTGTTTGGTTCGGC GCCCTGGAGGGCTACATCTGCTCCGTGCTGTTTGGTTCGGC < 41bp 0.510072832369367 0.758468077371063 0.3226204 0.35062543 prediction 0.496790490003391 Functional Gain - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16799017 chr19:16799018 nonsynonymous SNV 0.785 0 22 hm5C_associated_SNPs_108780 0 0 0 0 1 TMEM38A chr19:16798955 3'AG 16798955 Downstream 64bp
chr16 56928523 56928523 1 + C T SKCM 56928522 + 56928502 56928542 41 ATCCGTGTGTTCGTAGGCGGCCAGATTAACAGGATGGACCA ATCCGTGTGTTCGTAGGCGGCTAGATTAACAGGATGGACCA < 41bp 0.507939816223377 0.756334412793315 0.8779289 0.49270812 prediction 0.496789193139876 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56928522 chr16:56928523 stopgain 0.966 1 22 hm5C_associated_SNPs_108781 0 0 1 0 2 SLC12A3 chr16:56928443 3'AG 56928443 Downstream 81bp
chr16 56928523 56928523 1 + C T SKCM 56928522 + 56928502 56928542 41 ATCCGTGTGTTCGTAGGCGGCCAGATTAACAGGATGGACCA ATCCGTGTGTTCGTAGGCGGCTAGATTAACAGGATGGACCA < 41bp 0.507939816223377 0.756334412793315 0.8779289 0.49270812 prediction 0.496789193139876 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56928522 chr16:56928523 stopgain 0.966 1 22 hm5C_associated_SNPs_108781 0 0 1 0 2 SLC12A3 chr16:56928554 5'GT 56928554 Upstream 32bp
chr1 36411312 36411312 1 + C T SKCM 36411311 + 36411291 36411331 41 AGGACCCGCTGGGGCCCAGCCCCTACTCATGGTGCCCAGAA AGGACCCGCTGGGGCCCAGCCTCTACTCATGGTGCCCAGAA < 41bp 0.487972171406574 0.748393808232228 0.077739745 0.9282248 prediction 0.496787616464457 Functional Gain - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36411311 chr1:36411312 synonymous SNV . 0 22 hm5C_associated_SNPs_108782 0 0 1 0 1 AGO3 chr1:36411293 3'AG 36411293 Downstream 20bp
chr1 155150983 155150983 1 + T G GBM 155150980 + 155150960 155151000 41 CATCCCAGGATTGCCCGAGCCACTGAAGCCCTCCAGACATT CATCCCAGGATTGCCCGAGCCACGGAAGCCCTCCAGACATT < 41bp 0.369505113546385 0.748392741148209 0.27996227 0.15872586 prediction 0.496785482296418 Functional Gain - TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155150980 chr1:155150983 synonymous SNV . 0 24 hm5C_associated_SNPs_108783 0 0 0 0 1 TRIM46 chr1:155150968 3'AG 155150968 Downstream 16bp
chr1 209768386 209768386 1 + C T ESCA 209768385 + 209768365 209768405 41 AAGAAACAGACCACCAACATCCGGAAAACCTTCATTTTTAT AAGAAACAGACCACCAACATCTGGAAAACCTTCATTTTTAT < 41bp 0.517930086257792 0.766318560137571 0.19095996 0.17569488 prediction 0.496776947759559 Functional Gain - CAMK1G ENSG00000008118 CDS Human protein_coding chr1:209768385 chr1:209768386 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_108786 0 0 0 0 2 CAMK1G chr1:209768300 3'AG 209768300 Downstream 87bp
chr1 209768386 209768386 1 + C T ESCA 209768385 + 209768365 209768405 41 AAGAAACAGACCACCAACATCCGGAAAACCTTCATTTTTAT AAGAAACAGACCACCAACATCTGGAAAACCTTCATTTTTAT < 41bp 0.517930086257792 0.766318560137571 0.19095996 0.17569488 prediction 0.496776947759559 Functional Gain - CAMK1G ENSG00000008118 CDS Human protein_coding chr1:209768385 chr1:209768386 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_108786 0 0 0 0 2 CAMK1G chr1:209768420 5'GT 209768420 Upstream 35bp
chr7 23728934 23728934 1 + C T UCEC 23728933 + 23728913 23728953 41 GAAGCGATTCCTCAGCAGTGCCCCATTGATCTGCCCTGCCA GAAGCGATTCCTCAGCAGTGCTCCATTGATCTGCCCTGCCA < 41bp 0.528882922467952 0.777226100068549 0.03996837 0.8921407 prediction 0.496686355201194 Functional Gain - FAM221A ENSG00000188732 CDS Human protein_coding chr7:23728933 chr7:23728934 nonsynonymous SNV 0.335 2 22 hm5C_associated_SNPs_108790 0 0 0 0 1 FAM221A chr7:23728888 3'AG 23728888 Downstream 47bp
chr9 131115449 131115449 1 + C T SKCM 131115448 + 131115428 131115468 41 TTTCCAGCCGCTTCCACATACCCCAGGTGGCTGAGTTCTAC TTTCCAGCCGCTTCCACATACTCCAGGTGGCTGAGTTCTAC < 41bp 0.542287428013212 0.790600717923296 0.097173214 0.9280633 prediction 0.496626579820169 Functional Gain - SLC27A4 ENSG00000167114 CDS Human protein_coding chr9:131115448 chr9:131115449 nonsynonymous SNV 0.990 1 22 hm5C_associated_SNPs_108794 0 0 1 0 1 SLC27A4 chr9:131115513 5'GT 131115513 Upstream 65bp
chr12 81102338 81102338 1 + C T CESC 81102337 + 81102317 81102357 41 TTTCCTGCGCACCTGCAGCTCCCAGTGGCCAAGTGTTTCCG TTTCCTGCGCACCTGCAGCTCTCAGTGGCCAAGTGTTTCCG < 41bp 0.530701866703333 0.778996299158766 0.044596583 0.018615603 prediction 0.496588864910865 Functional Gain - MYF6 ENSG00000111046 CDS Human protein_coding chr12:81102337 chr12:81102338 synonymous SNV . 0 22 hm5C_associated_SNPs_108798 0 0 0 0 2 MYF6 chr12:81102303 3'AG 81102303 Downstream 36bp
chr12 81102338 81102338 1 + C T CESC 81102337 + 81102317 81102357 41 TTTCCTGCGCACCTGCAGCTCCCAGTGGCCAAGTGTTTCCG TTTCCTGCGCACCTGCAGCTCTCAGTGGCCAAGTGTTTCCG < 41bp 0.530701866703333 0.778996299158766 0.044596583 0.018615603 prediction 0.496588864910865 Functional Gain - MYF6 ENSG00000111046 CDS Human protein_coding chr12:81102337 chr12:81102338 synonymous SNV . 0 22 hm5C_associated_SNPs_108798 0 0 0 0 2 MYF6 chr12:81102393 5'GT 81102393 Upstream 56bp
chr17 38451656 38451656 1 + C T rs143357695 38451655 + 38451635 38451675 41 GCTGCAGTTCAATTCTGTGCCCGCAAAGTCTCTGCTGTTTC GCTGCAGTTCAATTCTGTGCCTGCAAAGTCTCTGCTGTTTC < 41bp 0.531372125205413 0.779666257612096 0.024750829 0.3727603 prediction 0.496588264813366 Functional Gain - CDC6 ENSG00000094804 CDS Human protein_coding chr17:38451655 chr17:38451656 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_108799 0 0 1 0 2 CDC6 chr17:38451608 3'AG 38451608 Downstream 49bp
chr17 38451656 38451656 1 + C T rs143357695 38451655 + 38451635 38451675 41 GCTGCAGTTCAATTCTGTGCCCGCAAAGTCTCTGCTGTTTC GCTGCAGTTCAATTCTGTGCCTGCAAAGTCTCTGCTGTTTC < 41bp 0.531372125205413 0.779666257612096 0.024750829 0.3727603 prediction 0.496588264813366 Functional Gain - CDC6 ENSG00000094804 CDS Human protein_coding chr17:38451655 chr17:38451656 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_108799 0 0 1 0 2 CDC6 chr17:38451708 5'GT 38451708 Upstream 53bp
chr1 27120626 27120626 1 + C T rs139246652 27120625 + 27120605 27120645 41 CCCTCTTCAATGCCATCATCCCAGATCACCATGCAGAAGCC CCCTCTTCAATGCCATCATCCTAGATCACCATGCAGAAGCC < 41bp 0.497047153914633 0.748290524338356 0.22997227 0.16475794 prediction 0.496581048676713 Functional Gain - PIGV ENSG00000060642 CDS Human protein_coding chr1:27120625 chr1:27120626 stopgain 0.993 5 22 hm5C_associated_SNPs_108800 2 0 0 0 2 PIGV chr1:27120604 3'AG 27120604 Downstream 23bp
chr1 27120626 27120626 1 + C T rs139246652 27120625 + 27120605 27120645 41 CCCTCTTCAATGCCATCATCCCAGATCACCATGCAGAAGCC CCCTCTTCAATGCCATCATCCTAGATCACCATGCAGAAGCC < 41bp 0.497047153914633 0.748290524338356 0.22997227 0.16475794 prediction 0.496581048676713 Functional Gain - PIGV ENSG00000060642 CDS Human protein_coding chr1:27120625 chr1:27120626 stopgain 0.993 5 22 hm5C_associated_SNPs_108800 2 0 0 0 2 PIGV chr1:27120697 5'GT 27120697 Upstream 72bp
chr16 31383059 31383059 1 + T A UCEC 31383055 + 31383035 31383075 41 ACCGGAGTCTGAGCCGAGTCCGAGTCCTCGGGCTGAAGGCA ACCGGAGTCTGAGCCGAGTCCGAGACCTCGGGCTGAAGGCA < 41bp 0.419666430737933 0.748289090363258 0.20449108 0.40287274 prediction 0.496578180726515 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31383055 chr16:31383059 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_108803 0 0 0 0 1 ITGAX chr16:31383105 5'GT 31383105 Upstream 47bp
chr5 35876108 35876108 1 + T G ESCA 35876106 + 35876086 35876126 41 ATTTAAATGTGAGTTTCAATCCTGAAAGTTTCCTGGACTGC ATTTAAATGTGAGTTTCAATCCGGAAAGTTTCCTGGACTGC < 41bp 0.427526347214786 0.748286383882934 0.2976333 0.8859253 prediction 0.496572767765868 Functional Gain - IL7R ENSG00000168685 CDS Human protein_coding chr5:35876106 chr5:35876108 synonymous SNV . 0 23 hm5C_associated_SNPs_108804 0 0 0 0 1 IL7R chr5:35876085 3'AG 35876085 Downstream 24bp
chr14 68040100 68040100 1 + C T SKCM 68040099 + 68040079 68040119 41 ACAGATTATGTACTACAAGTCCCCGGTGAGAGTCTCCCCGC ACAGATTATGTACTACAAGTCTCCGGTGAGAGTCTCCCCGC < 41bp 0.493459421639555 0.748283471841195 0.2657244 0.2971659 prediction 0.496566943682391 Functional Gain - PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68040099 chr14:68040100 synonymous SNV . 0 22 hm5C_associated_SNPs_108805 0 0 0 0 1 PLEKHH1 chr14:68040103 5'GT 68040103 Upstream 4bp
chr19 55085354 55085354 1 + C A LUSC 55085350 + 55085330 55085370 41 AGTGGGAGGAGACGCCATGACCCCCATCCTCACGGTCCTGA AGTGGGAGGAGACGCCATGACCCCAATCCTCACGGTCCTGA < 41bp 0.322590995897714 0.748279740269095 0.09401119 0.12378681 prediction 0.496559480538189 Functional Gain - LILRA2 ENSG00000104972;ENSG00000239998 CDS Human other chr19:55085350 chr19:55085354 synonymous SNV . 0 25 hm5C_associated_SNPs_108807 0 0 0 0 1 LILRA2 chr19:55085379 5'GT 55085379 Upstream 26bp
chr6 34835154 34835154 1 + C T LUAD 34835153 + 34835133 34835173 41 GGAGAAGACCTCATCTTTCACCCGGTCAGCAGCTCTACTTT GGAGAAGACCTCATCTTTCACTCGGTCAGCAGCTCTACTTT < 41bp 0.501221176476418 0.749491507266823 0.28347975 0.18967894 prediction 0.496540661580811 Functional Gain - UHRF1BP1 ENSG00000065060 CDS Human protein_coding chr6:34835153 chr6:34835154 nonsynonymous SNV 0.423 0 22 hm5C_associated_SNPs_108809 0 0 1 0 1 UHRF1BP1 chr6:34835156 5'GT 34835156 Upstream 3bp
chr6 34741226 34741226 1 + C A UCEC 34741225 + 34741205 34741245 41 CTTTGTTTTGTCCTGCAGCTCCTGGAATGAGGCCGCCCATG CTTTGTTTTGTCCTGCAGCTCATGGAATGAGGCCGCCCATG < 41bp 0.503006361371069 0.751272587355867 0.32304192 0.5664796 prediction 0.496532451969596 Functional Gain - SNRPC ENSG00000124562 CDS Human protein_coding chr6:34741225 chr6:34741226 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_108810 0 0 1 0 1 SNRPC chr6:34741223 3'AG 34741223 Downstream 4bp
chr17 694810 694810 1 + C A rs183214037 694806 + 694786 694826 41 CCTGGGAGCCCAAAGTGCTCCGGGCGGGTATGGGCGCACAT CCTGGGAGCCCAAAGTGCTCCGGGAGGGTATGGGCGCACAT < 41bp 0.671710046552432 0.919974032611277 0.60405123 0.69895995 prediction 0.49652797211769 Functional Gain - MRM3 ENSG00000171861 CDS Human protein_coding chr17:694806 chr17:694810 nonsynonymous SNV 0.689 4 25 hm5C_associated_SNPs_108811 0 0 1 0 1 MRM3 chr17:694774 3'AG 694774 Downstream 37bp
chr22 44583707 44583707 1 + C T COAD 44583706 + 44583686 44583726 41 CTCCCCGAGCACATTGTGGTCCGCAGCCTGGAGGAGGACAT CTCCCCGAGCACATTGTGGTCTGCAGCCTGGAGGAGGACAT < 41bp 0.528773576086461 0.777030525712672 0.19475952 0.20015344 prediction 0.496513899252422 Functional Gain - PARVG ENSG00000138964 CDS Human protein_coding chr22:44583706 chr22:44583707 nonsynonymous SNV 0.988 3 22 hm5C_associated_SNPs_108814 0 0 0 0 2 PARVG chr22:44583656 3'AG 44583656 Downstream 52bp
chr22 44583707 44583707 1 + C T COAD 44583706 + 44583686 44583726 41 CTCCCCGAGCACATTGTGGTCCGCAGCCTGGAGGAGGACAT CTCCCCGAGCACATTGTGGTCTGCAGCCTGGAGGAGGACAT < 41bp 0.528773576086461 0.777030525712672 0.19475952 0.20015344 prediction 0.496513899252422 Functional Gain - PARVG ENSG00000138964 CDS Human protein_coding chr22:44583706 chr22:44583707 nonsynonymous SNV 0.988 3 22 hm5C_associated_SNPs_108814 0 0 0 0 2 PARVG chr22:44583758 5'GT 44583758 Upstream 52bp
chr17 40936148 40936148 1 + C G rs142280606 40936144 + 40936124 40936164 41 GACCTGGGCCTGGCCACGCTCAAGCGCGCCTCCTTTGCCAA GACCTGGGCCTGGCCACGCTCAAGGGCGCCTCCTTTGCCAA < 41bp 0.592637150186719 0.84088841230428 0.7285466 0.9491721 prediction 0.49650252423512 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40936144 chr17:40936148 nonsynonymous SNV 0.984 3 25 hm5C_associated_SNPs_108815 0 0 1 0 1 WNK4 chr17:40936175 5'GT 40936175 Upstream 28bp
chr1 17634748 17634748 1 + C A ESCA 17634747 + 17634727 17634767 41 GGGACATTGATCCGTGTGACCCCAGAGCAGCCCACCCATGC GGGACATTGATCCGTGTGACCACAGAGCAGCCCACCCATGC < 41bp 0.499297637121554 0.748230140014275 0.39432567 0.63615525 prediction 0.496460280028549 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17634747 chr1:17634748 nonsynonymous SNV 0.066 1 22 hm5C_associated_SNPs_108818 0 0 0 0 1 PADI4 chr1:17634809 5'GT 17634809 Upstream 62bp
chr3 20142869 20142869 1 + C T LUSC 20142868 + 20142848 20142888 41 TTGGCAAAAATGTTCCTAAACCGCATCAACTATTGGCATCT TTGGCAAAAATGTTCCTAAACTGCATCAACTATTGGCATCT < 41bp 0.49166996117728 0.748219498565696 0.026451707 0.1064398 prediction 0.496438997131392 Functional Gain - KAT2B ENSG00000114166 CDS Human protein_coding chr3:20142868 chr3:20142869 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_108819 0 0 0 0 1 KAT2B chr3:20142960 5'GT 20142960 Upstream 92bp
chr2 97463258 97463258 1 + C T LUAD 97463257 + 97463237 97463277 41 CTTCTTCCGGCAGCTGACAACCGAAGCCGGAAGCGGGTGTC CTTCTTCCGGCAGCTGACAACTGAAGCCGGAAGCGGGTGTC < 41bp 0.493294273609198 0.748216942463777 0.78957105 0.4764129 prediction 0.496433884927554 Functional Gain - CNNM4 ENSG00000158158 CDS Human protein_coding chr2:97463257 chr2:97463258 stopgain 0.996 1 22 hm5C_associated_SNPs_108820 0 0 1 0 1 CNNM4 chr2:97463250 3'AG 97463250 Downstream 9bp
chr12 122399950 122399950 1 + C G LGG 122399949 + 122399929 122399969 41 CTGGACATTCACCACACCGACCAGGGCTGCTATCCCACCTG CTGGACATTCACCACACCGACGAGGGCTGCTATCCCACCTG < 41bp 0.425651259361028 0.748199556638815 0.44912055 0.86630434 prediction 0.496399113277631 Functional Gain - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122399949 chr12:122399950 nonsynonymous SNV 0.887 2 22 hm5C_associated_SNPs_108825 0 0 0 0 1 WDR66 chr12:122399884 3'AG 122399884 Downstream 67bp
chr11 45948053 45948053 1 + C T rs533759355 45948052 + 45948032 45948072 41 AACAAGCATGTGGAATTCTTCCGCAATTTCTACCTGACCTT AACAAGCATGTGGAATTCTTCTGCAATTTCTACCTGACCTT < 41bp 0.48896889106567 0.748193971943235 0.22053397 0.19404307 prediction 0.496387943886471 Functional Gain - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45948052 chr11:45948053 nonsynonymous SNV 0.506 3 22 hm5C_associated_SNPs_108827 0 0 1 0 2 LARGE2 chr11:45947993 3'AG 45947993 Downstream 61bp
chr11 45948053 45948053 1 + C T rs533759355 45948052 + 45948032 45948072 41 AACAAGCATGTGGAATTCTTCCGCAATTTCTACCTGACCTT AACAAGCATGTGGAATTCTTCTGCAATTTCTACCTGACCTT < 41bp 0.48896889106567 0.748193971943235 0.22053397 0.19404307 prediction 0.496387943886471 Functional Gain - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45948052 chr11:45948053 nonsynonymous SNV 0.506 3 22 hm5C_associated_SNPs_108827 0 0 1 0 2 LARGE2 chr11:45948148 5'GT 45948148 Upstream 96bp
chr1 205554008 205554008 1 + T C UCEC 205554006 + 205553986 205554026 41 TTCCTGTGCCTCCTGCAGGGCATGAGGACCTGTTCAGCTGC TTCCTGTGCCTCCTGCAGGGCACGAGGACCTGTTCAGCTGC < 41bp 0.571604610503405 0.819798238765154 0.3649459 0.2576192 prediction 0.496387256523499 Functional Gain - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205554006 chr1:205554008 synonymous SNV . 0 23 hm5C_associated_SNPs_108828 0 0 0 0 1 MFSD4A chr1:205554004 3'AG 205554004 Downstream 5bp
chr3 129817118 129817118 1 + C A rs186160670 129817117 + 129817097 129817137 41 GATCCTGAAGGCAAGCTAAACCAGTTCCGGAAGAACCTGCG GATCCTGAAGGCAAGCTAAACAAGTTCCGGAAGAACCTGCG < 41bp 0.509765022068844 0.757954659374147 0.65663403 0.83561647 prediction 0.496379274610606 Functional Gain - FAM86HP ENSG00000251287 ncRNA_exonic Human protein_coding chr3:129817117 chr3:129817118 . . 0 22 hm5C_associated_SNPs_108830 0 0 0 0 1 ALG1L2 chr3:129817066 3'AG 129817066 Downstream 53bp
chr1 159273811 159273811 1 + T C UCEC 159273809 + 159273789 159273829 41 ACATGTAATGGGAACAATTTCTTTGAAGTCAGTTCCACCAA ACATGTAATGGGAACAATTTCTCTGAAGTCAGTTCCACCAA < 41bp 0.483085556595309 0.748182885847303 0.05384475 0.060810566 prediction 0.496365771694605 Functional Gain - FCER1A ENSG00000179639 CDS Human protein_coding chr1:159273809 chr1:159273811 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_108831 0 0 0 0 1 FCER1A chr1:159273718 3'AG 159273718 Downstream 94bp
chr20 33585345 33585345 1 + C G COAD 33585341 + 33585321 33585361 41 GAGCTGGGGGAGCAGGTGGACAGCCTGCAGCGGGTGCGGCA GAGCTGGGGGAGCAGGTGGACAGCGTGCAGCGGGTGCGGCA < 41bp 0.468186548192691 0.748174013284106 0.8244035 0.87093747 prediction 0.496348026568213 Functional Gain - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33585341 chr20:33585345 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_108832 0 0 0 0 1 MYH7B chr20:33585443 5'GT 33585443 Upstream 99bp
chr19 7743083 7743083 1 + C G UCEC 7743079 + 7743059 7743099 41 GCCTGTACATCCTCCTGGCCCTGGCCTTTGTCCTCTGCATC GCCTGTACATCCTCCTGGCCCTGGGCTTTGTCCTCTGCATC < 41bp 0.595796925064042 0.843966835422863 0.046772093 0.101967305 prediction 0.496339820717642 Functional Gain - MCEMP1 ENSG00000183019 CDS Human protein_coding chr19:7743079 chr19:7743083 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_108833 0 0 0 0 1 MCEMP1 chr19:7742990 3'AG 7742990 Downstream 94bp
chr3 17056281 17056281 1 + C T LGG 17056280 + 17056260 17056300 41 TGCATGTTGGCGGTGTCTCCCCGCTTTCTGGGGCCCGATAA TGCATGTTGGCGGTGTCTCCCTGCTTTCTGGGGCCCGATAA < 41bp 0.514791506169978 0.762944077042965 0.053073734 0.035978317 prediction 0.496305141745974 Functional Gain - PLCL2 ENSG00000154822 CDS Human protein_coding chr3:17056280 chr3:17056281 nonsynonymous SNV 0.922 3 22 hm5C_associated_SNPs_108834 0 0 0 0 1 PLCL2 chr3:17056200 3'AG 17056200 Downstream 82bp
chr11 60689259 60689259 1 + C A COAD 60689258 + 60689238 60689278 41 GCTTCCAGGTGATTACCTCGCCCAGGGCCTGAAGCTCAGCC GCTTCCAGGTGATTACCTCGCACAGGGCCTGAAGCTCAGCC < 41bp 0.527189616882479 0.775328821690575 0.37588528 0.359892 prediction 0.496278409616193 Functional Gain - TMEM109 ENSG00000110108 CDS Human protein_coding chr11:60689258 chr11:60689259 synonymous SNV . 0 22 hm5C_associated_SNPs_108836 0 0 1 0 1 TMEM109 chr11:60689246 3'AG 60689246 Downstream 14bp
chr7 44805846 44805846 1 + C T SKCM 44805845 + 44805825 44805865 41 CCAACCCTTGCTGAGTTCACCCCGGGACCACCCCCCATCTC CCAACCCTTGCTGAGTTCACCTCGGGACCACCCCCCATCTC < 41bp 0.520247616311988 0.768383406223007 0.6065743 0.48039326 prediction 0.496271579822039 Functional Gain - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44805845 chr7:44805846 nonsynonymous SNV 0.888 1 22 hm5C_associated_SNPs_108838 0 0 1 0 2 ZMIZ2 chr7:44805763 3'AG 44805763 Downstream 84bp
chr7 44805846 44805846 1 + C T SKCM 44805845 + 44805825 44805865 41 CCAACCCTTGCTGAGTTCACCCCGGGACCACCCCCCATCTC CCAACCCTTGCTGAGTTCACCTCGGGACCACCCCCCATCTC < 41bp 0.520247616311988 0.768383406223007 0.6065743 0.48039326 prediction 0.496271579822039 Functional Gain - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44805845 chr7:44805846 nonsynonymous SNV 0.888 1 22 hm5C_associated_SNPs_108838 0 0 1 0 2 ZMIZ2 chr7:44805932 5'GT 44805932 Upstream 87bp
chr1 113231614 113231614 1 + T A SARC 113231610 + 113231590 113231630 41 GCTGTATGGAATGAAGATTGCAAATCTGGCCTACGTCACCA GCTGTATGGAATGAAGATTGCAAAACTGGCCTACGTCACCA < 41bp 0.431068248833433 0.748130505990437 0.13835675 0.24669653 prediction 0.496261011980874 Functional Gain - MOV10 ENSG00000155363 CDS Human protein_coding chr1:113231610 chr1:113231614 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_108839 0 0 1 0 1 MOV10 chr1:113231557 3'AG 113231557 Downstream 58bp
chr19 19308370 19308370 1 + C T UCEC 19308369 + 19308349 19308389 41 GCCAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCG GCCAGACGAGCGCGGCTTCACTCCCCTCATCTGGGCCTCCG < 41bp 0.487700079486261 0.748124575743077 0.053771406 0.1685102 prediction 0.496249151486153 Functional Gain - RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308369 chr19:19308370 synonymous SNV . 0 22 hm5C_associated_SNPs_108840 0 0 1 0 2 RFXANK chr19:19308330 3'AG 19308330 Downstream 41bp
chr19 19308370 19308370 1 + C T UCEC 19308369 + 19308349 19308389 41 GCCAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCG GCCAGACGAGCGCGGCTTCACTCCCCTCATCTGGGCCTCCG < 41bp 0.487700079486261 0.748124575743077 0.053771406 0.1685102 prediction 0.496249151486153 Functional Gain - RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308369 chr19:19308370 synonymous SNV . 0 22 hm5C_associated_SNPs_108840 0 0 1 0 2 RFXANK chr19:19308430 5'GT 19308430 Upstream 61bp
chr10 3189867 3189867 1 - G T SARC 3189871 - 3189851 3189891 41 TGAAGATGACCGCCCAGGAGCTCGCCAATGGAATTCCTGAC TGAAGATGACCGCCCAGGAGCTCGACAATGGAATTCCTGAC < 41bp 0.312881398058357 0.748120343805131 0.37286568 0.18793905 prediction 0.496240687610262 Functional Gain - PITRM1 ENSG00000107959 CDS Human protein_coding chr10:3189871 chr10:3189867 nonsynonymous SNV 0.023 1 25 hm5C_associated_SNPs_108841 0 0 1 0 1 PITRM1 chr10:3189929 3'AG 3189929 Downstream 63bp
chr11 65721141 65721141 1 + C A UCEC 65721140 + 65721120 65721160 41 CAGCGGCAGGTGGCCCACTGCCTGGCAGCCTACGCACCCAG CAGCGGCAGGTGGCCCACTGCATGGCAGCCTACGCACCCAG < 41bp 0.521010037110523 0.769127404555316 0.12990448 0.5298354 prediction 0.496234734889585 Functional Gain - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65721140 chr11:65721141 unknown 0.994 2 22 hm5C_associated_SNPs_108843 0 0 0 0 1 TSGA10IP chr11:65721208 5'GT 65721208 Upstream 68bp
chr16 845278 845278 1 + C G rs61753374 845274 + 845254 845294 41 CTTCCAGCTGCTGCGCTACCCACCCTTCCTGCCCGTGGCCT CTTCCAGCTGCTGCGCTACCCACCGTTCCTGCCCGTGGCCT < 41bp 0.463908371788944 0.748115146220849 0.017577976 0.27207237 prediction 0.496230292441699 Functional Gain - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845274 chr16:845278 synonymous SNV . 0 25 hm5C_associated_SNPs_108845 0 0 1 0 1 CHTF18 chr16:845356 5'GT 845356 Upstream 79bp
chr7 148481127 148481127 1 + C T SKCM 148481126 + 148481106 148481146 41 CCCAATCATCCAGTAAATCCCCTGAGTTGCTGGCTCGATAC CCCAATCATCCAGTAAATCCCTTGAGTTGCTGGCTCGATAC < 41bp 0.540405959855062 0.788508053589707 0.10372639 0.11133072 prediction 0.49620418746929 Functional Gain - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148481126 chr7:148481127 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_108846 0 0 1 0 2 CUL1 chr7:148481063 3'AG 148481063 Downstream 65bp
chr7 148481127 148481127 1 + C T SKCM 148481126 + 148481106 148481146 41 CCCAATCATCCAGTAAATCCCCTGAGTTGCTGGCTCGATAC CCCAATCATCCAGTAAATCCCTTGAGTTGCTGGCTCGATAC < 41bp 0.540405959855062 0.788508053589707 0.10372639 0.11133072 prediction 0.49620418746929 Functional Gain - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148481126 chr7:148481127 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_108846 0 0 1 0 2 CUL1 chr7:148481169 5'GT 148481169 Upstream 43bp
chr19 828280 828280 1 + C A LUSC 828276 + 828256 828296 41 GGCGGCCGGAAGGCGAGGCCCCGCCAGTTCCCGTTCCTGGC GGCGGCCGGAAGGCGAGGCCCCGCAAGTTCCCGTTCCTGGC < 41bp 0.345784240621788 0.748096716479101 0.6270883 0.5172794 prediction 0.496193432958201 Functional Gain - AZU1 ENSG00000172232 CDS Human protein_coding chr19:828276 chr19:828280 nonsynonymous SNV 0.005 2 25 hm5C_associated_SNPs_108847 0 0 0 0 1 AZU1 chr19:828230 3'AG 828230 Downstream 51bp
chr5 150838438 150838438 1 + C A COAD 150838437 + 150838417 150838457 41 GAGGAGAGCCCGTCGGAAGGCCTCAACAACCTCTCCTCCCC GAGGAGAGCCCGTCGGAAGGCATCAACAACCTCTCCTCCCC < 41bp 0.492961975402495 0.748095121288615 0.5366257 0.13929951 prediction 0.496190242577231 Functional Gain - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150838437 chr5:150838438 nonsynonymous SNV 0.165 0 22 hm5C_associated_SNPs_108848 0 0 1 0 2 SLC36A1 chr5:150838349 3'AG 150838349 Downstream 90bp
chr5 150838438 150838438 1 + C A COAD 150838437 + 150838417 150838457 41 GAGGAGAGCCCGTCGGAAGGCCTCAACAACCTCTCCTCCCC GAGGAGAGCCCGTCGGAAGGCATCAACAACCTCTCCTCCCC < 41bp 0.492961975402495 0.748095121288615 0.5366257 0.13929951 prediction 0.496190242577231 Functional Gain - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150838437 chr5:150838438 nonsynonymous SNV 0.165 0 22 hm5C_associated_SNPs_108848 0 0 1 0 2 SLC36A1 chr5:150838496 5'GT 150838496 Upstream 59bp
chr17 78061450 78061450 1 + C G PRAD 78061449 + 78061429 78061469 41 GAGCAGAAGGAGATCGAGCACCACATGAAGGACCTGGACAA GAGCAGAAGGAGATCGAGCACGACATGAAGGACCTGGACAA < 41bp 0.437634987596294 0.748094297339196 0.36667222 0.43175888 prediction 0.496188594678392 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78061449 chr17:78061450 nonsynonymous SNV 0.223 1 22 hm5C_associated_SNPs_108849 0 0 0 0 1 CCDC40 chr17:78061406 3'AG 78061406 Downstream 45bp
chr22 29445263 29445263 1 + C A UCEC 29445262 + 29445242 29445282 41 GGCAGCAGAGGGTGACCCTGCCGGTGCATTACCCCGGCCGC GGCAGCAGAGGGTGACCCTGCAGGTGCATTACCCCGGCCGC < 41bp 0.517151451093824 0.765236786282846 0.9040234 0.91574657 prediction 0.496170670378044 Functional Gain - ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29445262 chr22:29445263 nonsynonymous SNV 0.983 4 22 hm5C_associated_SNPs_108850 0 0 1 0 1 ZNRF3 chr22:29445185 3'AG 29445185 Downstream 79bp
chr4 187005868 187005868 1 + T G rs115677523 187005866 + 187005846 187005886 41 ATTCCATTATATTGGTTTTCCTTGAGGAGATTCCAGATTAT ATTCCATTATATTGGTTTTCCTGGAGGAGATTCCAGATTAT < 41bp 0.601866239117007 0.849941859847717 0.08460167 0.22245875 prediction 0.496151241461421 Functional Gain - TLR3 ENSG00000164342 CDS Human protein_coding chr4:187005866 chr4:187005868 synonymous SNV . 0 23 hm5C_associated_SNPs_108852 0 0 1 0 1 TLR3 chr4:187005799 3'AG 187005799 Downstream 70bp
chr10 129869087 129869087 1 + C T SKCM 129869086 + 129869066 129869106 41 CTGCAGAAATTGACAAATGTCCGGATCATGAAGGAGAACAT CTGCAGAAATTGACAAATGTCTGGATCATGAAGGAGAACAT < 41bp 0.509734519976207 0.757805363130545 0.6747357 0.3277902 prediction 0.496141686308676 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129869086 chr10:129869087 nonsynonymous SNV 0.984 4 22 hm5C_associated_SNPs_108853 0 0 0 0 2 PTPRE chr10:129869072 3'AG 129869072 Downstream 16bp
chr10 129869087 129869087 1 + C T SKCM 129869086 + 129869066 129869106 41 CTGCAGAAATTGACAAATGTCCGGATCATGAAGGAGAACAT CTGCAGAAATTGACAAATGTCTGGATCATGAAGGAGAACAT < 41bp 0.509734519976207 0.757805363130545 0.6747357 0.3277902 prediction 0.496141686308676 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129869086 chr10:129869087 nonsynonymous SNV 0.984 4 22 hm5C_associated_SNPs_108853 0 0 0 0 2 PTPRE chr10:129869165 5'GT 129869165 Upstream 79bp
chr2 233273504 233273504 1 + T A rs183793479 233273500 + 233273480 233273520 41 TGGAGATGACAGAGGCTGCCCTGCTCCTGCTGAGCAGGAAC TGGAGATGACAGAGGCTGCCCTGCACCTGCTGAGCAGGAAC < 41bp 0.408416622213655 0.748070611316147 0.37561515 0.3766293 prediction 0.496141222632293 Functional Gain - ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233273500 chr2:233273504 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_108854 0 0 0 0 1 ALPPL2 chr2:233273414 3'AG 233273414 Downstream 91bp
chr20 60864362 60864362 1 + C T CESC 60864361 + 60864341 60864381 41 TGCCGCCTGCGCCCTGACATCCGCGGCATGGAGAATGGCAA TGCCGCCTGCGCCCTGACATCTGCGGCATGGAGAATGGCAA < 41bp 0.523570771052928 0.771637011192589 0.60609996 0.3416737 prediction 0.496132480279321 Functional Gain - OSBPL2 ENSG00000130703 CDS Human protein_coding chr20:60864361 chr20:60864362 nonsynonymous SNV 0.967 4 22 hm5C_associated_SNPs_108855 0 0 1 0 2 OSBPL2 chr20:60864263 3'AG 60864263 Downstream 100bp
chr20 60864362 60864362 1 + C T CESC 60864361 + 60864341 60864381 41 TGCCGCCTGCGCCCTGACATCCGCGGCATGGAGAATGGCAA TGCCGCCTGCGCCCTGACATCTGCGGCATGGAGAATGGCAA < 41bp 0.523570771052928 0.771637011192589 0.60609996 0.3416737 prediction 0.496132480279321 Functional Gain - OSBPL2 ENSG00000130703 CDS Human protein_coding chr20:60864361 chr20:60864362 nonsynonymous SNV 0.967 4 22 hm5C_associated_SNPs_108855 0 0 1 0 2 OSBPL2 chr20:60864386 5'GT 60864386 Upstream 25bp
chr17 63206617 63206617 1 + C A UCEC 63206613 + 63206593 63206633 41 TCCTTCCTTCCAGCTCCACCCTCCCTTTTATGCGGCGTCAC TCCTTCCTTCCAGCTCCACCCTCCATTTTATGCGGCGTCAC < 41bp 0.303978332345359 0.748061776179609 0.30879456 0.9565913 prediction 0.496123552359218 Functional Gain - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63206613 chr17:63206617 nonsynonymous SNV 0.974 3 25 hm5C_associated_SNPs_108857 0 0 0 0 1 RGS9 chr17:63206606 3'AG 63206606 Downstream 12bp
chr15 91488186 91488186 1 + C T rs74839044 91488185 + 91488165 91488205 41 TCCTGGGGAGCTCGCAGTGACCGCAAACAGCCGCATGAGCG TCCTGGGGAGCTCGCAGTGACTGCAAACAGCCGCATGAGCG < 41bp 0.490108376867397 0.74805911357138 0.02963072 0.088144004 prediction 0.496118227142761 Functional Gain - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91488185 chr15:91488186 synonymous SNV . 0 22 hm5C_associated_SNPs_108858 0 0 1 0 1 UNC45A chr15:91488122 3'AG 91488122 Downstream 65bp
chr6 44141106 44141106 1 + A G UCEC 44141103 + 44141083 44141123 41 AGGCCGTGGAGCGATCCTCCCTCATGGGTTGCTCCATTGAA AGGCCGTGGAGCGATCCTCCCTCGTGGGTTGCTCCATTGAA < 41bp 0.500777388039074 0.748834001448999 0.015552491 0.031788558 prediction 0.49611322681985 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44141103 chr6:44141106 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_108859 0 0 0 0 1 CAPN11 chr6:44141123 5'GT 44141123 Upstream 18bp
chr16 70500084 70500084 1 + C T rs140084649 70500083 + 70500063 70500103 41 GCAGGGCTTTCACCTGCCTCCCCGTGGAGAACCCCGAGGCC GCAGGGCTTTCACCTGCCTCCTCGTGGAGAACCCCGAGGCC < 41bp 0.503676964989503 0.751727177556261 0.21031606 0.29132497 prediction 0.496100425133516 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70500083 chr16:70500084 nonsynonymous SNV 0.388 4 22 hm5C_associated_SNPs_108860 0 0 1 0 1 FUK chr16:70500160 5'GT 70500160 Upstream 77bp
chrX 138633371 138633371 1 + T G UCEC 138633369 + 138633349 138633389 41 AGCACCCAATCATTTAATGACTTCACTCGGGTTGTTGGTGG AGCACCCAATCATTTAATGACTGCACTCGGGTTGTTGGTGG < 41bp 0.429904670902858 0.74804949531989 0.043297827 0.05939454 prediction 0.49609899063978 Functional Gain - F9 ENSG00000101981 CDS Human protein_coding chrX:138633369 chrX:138633371 nonsynonymous SNV 0.502 1 23 hm5C_associated_SNPs_108861 0 0 0 0 1 F9 chrX:138633423 5'GT 138633423 Upstream 53bp
chr11 6292659 6292659 1 + C A LUAD 6292658 + 6292638 6292678 41 AACTTGCGCTCGCTGCTGCCCCCGGCCTCCACGAGCTCGCC AACTTGCGCTCGCTGCTGCCCACGGCCTCCACGAGCTCGCC < 41bp 0.510399511820602 0.758446024990431 0.19665334 0.14330825 prediction 0.49609302633966 Functional Gain - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6292658 chr11:6292659 synonymous SNV . 0 22 hm5C_associated_SNPs_108862 0 0 0 0 1 CCKBR chr11:6292627 3'AG 6292627 Downstream 33bp
chr10 88719789 88719789 1 + C A rs760113 88719788 + 88719768 88719808 41 GACCAAGGAGCAGGCCAACGCCGTGAGCGAGGCTGTGGTGA GACCAAGGAGCAGGCCAACGCAGTGAGCGAGGCTGTGGTGA < 41bp 0.524489888807152 0.772532862325593 0.28147262 0.86757505 prediction 0.496085947036881 Functional Gain - SNCG ENSG00000173267 CDS Human protein_coding chr10:88719788 chr10:88719789 nonsynonymous SNV 0.966 2 22 hm5C_associated_SNPs_108864 0 0 1 0 2 SNCG chr10:88719758 3'AG 88719758 Downstream 32bp
chr10 88719789 88719789 1 + C A rs760113 88719788 + 88719768 88719808 41 GACCAAGGAGCAGGCCAACGCCGTGAGCGAGGCTGTGGTGA GACCAAGGAGCAGGCCAACGCAGTGAGCGAGGCTGTGGTGA < 41bp 0.524489888807152 0.772532862325593 0.28147262 0.86757505 prediction 0.496085947036881 Functional Gain - SNCG ENSG00000173267 CDS Human protein_coding chr10:88719788 chr10:88719789 nonsynonymous SNV 0.966 2 22 hm5C_associated_SNPs_108864 0 0 1 0 2 SNCG chr10:88719885 5'GT 88719885 Upstream 97bp
chr1 43305712 43305712 1 + C G COAD 43305711 + 43305691 43305731 41 TTTCATTCTTTAGAGAAACTCCGGAGTGAACTGAGTAAGTT TTTCATTCTTTAGAGAAACTCGGGAGTGAACTGAGTAAGTT < 41bp 0.610121144466243 0.858146527428308 0.52187324 0.90499234 prediction 0.49605076592413 Functional Gain - ERMAP ENSG00000164010 CDS Human protein_coding chr1:43305711 chr1:43305712 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_108866 0 0 1 0 2 ERMAP chr1:43305704 3'AG 43305704 Downstream 9bp
chr1 43305712 43305712 1 + C G COAD 43305711 + 43305691 43305731 41 TTTCATTCTTTAGAGAAACTCCGGAGTGAACTGAGTAAGTT TTTCATTCTTTAGAGAAACTCGGGAGTGAACTGAGTAAGTT < 41bp 0.610121144466243 0.858146527428308 0.52187324 0.90499234 prediction 0.49605076592413 Functional Gain - ERMAP ENSG00000164010 CDS Human protein_coding chr1:43305711 chr1:43305712 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_108866 0 0 1 0 2 ERMAP chr1:43305724 5'GT 43305724 Upstream 13bp
chr3 40523409 40523409 1 + T G rs9852518 40523406 + 40523386 40523426 41 AGTAACCTTTGAGGATGTGGCTGTGTACTTCACCCAGAATG AGTAACCTTTGAGGATGTGGCTGGGTACTTCACCCAGAATG < 41bp 0.401547883426241 0.748022405504215 0.098225236 0.43094113 prediction 0.496044811008429 Functional Gain - ZNF619 ENSG00000177873 CDS Human protein_coding chr3:40523406 chr3:40523409 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_108869 0 0 1 0 1 ZNF619 chr3:40523507 5'GT 40523507 Upstream 99bp
chr19 56915732 56915732 1 + C G rs367599155 56915731 + 56915711 56915751 41 CGCCTTTGTGAGCGCGGCCGCCGGCCAGGATCGAGCCCTGG CGCCTTTGTGAGCGCGGCCGCGGGCCAGGATCGAGCCCTGG < 41bp 0.576749448113252 0.824769102103203 0.35039786 0.8515341 prediction 0.496039307979902 Functional Gain - ZNF583 ENSG00000198440 UTR5 Human protein_coding chr19:56915731 chr19:56915732 . . 0 22 hm5C_associated_SNPs_108871 0 0 1 0 2 ZNF583 chr19:56915798 5'GT 56915798 Upstream 67bp
chr19 56915732 56915732 1 + C G rs367599155 56915731 + 56915711 56915751 41 CGCCTTTGTGAGCGCGGCCGCCGGCCAGGATCGAGCCCTGG CGCCTTTGTGAGCGCGGCCGCGGGCCAGGATCGAGCCCTGG < 41bp 0.576749448113252 0.824769102103203 0.35039786 0.8515341 prediction 0.496039307979902 Functional Gain - ZNF583 ENSG00000198440 UTR5 Human protein_coding chr19:56915731 chr19:56915732 . . 0 22 hm5C_associated_SNPs_108871 0 0 1 0 2 ZNF583 chr19:56915821 5'GT 56915821 Upstream 90bp
chr2 218954697 218954697 1 + C G rs200265451 218954693 + 218954673 218954713 41 AGGCTCTGTGGAGGCCTGCTCTGCCATGCTTGCTCCATGGA AGGCTCTGTGGAGGCCTGCTCTGCGATGCTTGCTCCATGGA < 41bp 0.459294967838795 0.74800523179628 0.19792315 0.25084573 prediction 0.49601046359256 Functional Gain - RUFY4 ENSG00000188282 CDS Human protein_coding chr2:218954693 chr2:218954697 nonsynonymous SNV 0.592 3 25 hm5C_associated_SNPs_108875 0 0 0 0 1 RUFY4 chr2:218954675 3'AG 218954675 Downstream 23bp
chr12 58140020 58140020 1 + C G COAD 58140016 + 58139996 58140036 41 TTGTAATCTCTTGCTCATGTCTGGCTATTAACCGAAGCAAA TTGTAATCTCTTGCTCATGTCTGGGTATTAACCGAAGCAAA < 41bp 0.485226604432932 0.747981078445691 0.1301229 0.27100635 prediction 0.495962156891382 Functional Gain - TSPAN31 ENSG00000135452 CDS Human protein_coding chr12:58140016 chr12:58140020 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_108881 0 0 1 0 2 TSPAN31 chr12:58139959 3'AG 58139959 Downstream 62bp
chr12 58140020 58140020 1 + C G COAD 58140016 + 58139996 58140036 41 TTGTAATCTCTTGCTCATGTCTGGCTATTAACCGAAGCAAA TTGTAATCTCTTGCTCATGTCTGGGTATTAACCGAAGCAAA < 41bp 0.485226604432932 0.747981078445691 0.1301229 0.27100635 prediction 0.495962156891382 Functional Gain - TSPAN31 ENSG00000135452 CDS Human protein_coding chr12:58140016 chr12:58140020 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_108881 0 0 1 0 2 TSPAN31 chr12:58140039 5'GT 58140039 Upstream 20bp
chr1 27269230 27269230 1 + C T SKCM 27269229 + 27269209 27269249 41 TAGGCAACGGGGCAGACCTGCCCAATTACCGCTGGACCCAG TAGGCAACGGGGCAGACCTGCTCAATTACCGCTGGACCCAG < 41bp 0.485562283857174 0.747969927845205 0.19201863 0.22183096 prediction 0.49593985569041 Functional Gain - NUDC ENSG00000090273 CDS Human protein_coding chr1:27269229 chr1:27269230 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_108882 0 0 1 0 2 NUDC chr1:27269151 3'AG 27269151 Downstream 80bp
chr1 27269230 27269230 1 + C T SKCM 27269229 + 27269209 27269249 41 TAGGCAACGGGGCAGACCTGCCCAATTACCGCTGGACCCAG TAGGCAACGGGGCAGACCTGCTCAATTACCGCTGGACCCAG < 41bp 0.485562283857174 0.747969927845205 0.19201863 0.22183096 prediction 0.49593985569041 Functional Gain - NUDC ENSG00000090273 CDS Human protein_coding chr1:27269229 chr1:27269230 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_108882 0 0 1 0 2 NUDC chr1:27269267 5'GT 27269267 Upstream 38bp
chr19 3119345 3119345 1 + C T SKCM 3119344 + 3119324 3119364 41 TCGCACCTGGTGGACTACTTCCCCGAGTTCGATGGTGCGCC TCGCACCTGGTGGACTACTTCTCCGAGTTCGATGGTGCGCC < 41bp 0.520419069419646 0.768371972121615 0.25799832 0.8148265 prediction 0.495905805403938 Functional Gain - GNA11 ENSG00000088256 CDS Human protein_coding chr19:3119344 chr19:3119345 nonsynonymous SNV 0.947 3 22 hm5C_associated_SNPs_108884 0 0 1 0 1 GNA11 chr19:3119357 5'GT 3119357 Upstream 13bp
chr8 124442245 124442245 1 + C G BRCA 124442241 + 124442221 124442261 41 AGATACCTATCTGGAAACAACAGGCGAGACCTGGAGATGGA AGATACCTATCTGGAAACAACAGGGGAGACCTGGAGATGGA < 41bp 0.556279028136328 0.804229559195532 0.36300153 0.8749603 prediction 0.495901062118408 Functional Gain - WDYHV1 ENSG00000156795 CDS Human protein_coding chr8:124442241 chr8:124442245 nonsynonymous SNV 0.973 1 25 hm5C_associated_SNPs_108885 0 0 1 0 2 WDYHV1 chr8:124442223 3'AG 124442223 Downstream 23bp
chr8 124442245 124442245 1 + C G BRCA 124442241 + 124442221 124442261 41 AGATACCTATCTGGAAACAACAGGCGAGACCTGGAGATGGA AGATACCTATCTGGAAACAACAGGGGAGACCTGGAGATGGA < 41bp 0.556279028136328 0.804229559195532 0.36300153 0.8749603 prediction 0.495901062118408 Functional Gain - WDYHV1 ENSG00000156795 CDS Human protein_coding chr8:124442241 chr8:124442245 nonsynonymous SNV 0.973 1 25 hm5C_associated_SNPs_108885 0 0 1 0 2 WDYHV1 chr8:124442273 5'GT 124442273 Upstream 29bp
chr1 10132157 10132157 1 + C A HNSC 10132153 + 10132133 10132173 41 GCCAACCACCCCACTCACCTCTCCCCAGAGGGAGAACCCTC GCCAACCACCCCACTCACCTCTCCACAGAGGGAGAACCCTC < 41bp 0.306261964245557 0.747943673229392 0.5054925 0.95149004 prediction 0.495887346458784 Functional Gain - UBE4B ENSG00000130939 CDS Human protein_coding chr1:10132153 chr1:10132157 synonymous SNV . 0 25 hm5C_associated_SNPs_108886 0 0 1 0 1 UBE4B chr1:10132086 3'AG 10132086 Downstream 72bp
chr9 133346897 133346897 1 + C T HNSC 133346896 + 133346876 133346916 41 GAGGCTGGAATCCTGGAGAACCCCAAGGTAATCCCCCAAAC GAGGCTGGAATCCTGGAGAACTCCAAGGTAATCCCCCAAAC < 41bp 0.545751807063836 0.793666437298398 0.28863478 0.9547603 prediction 0.495829260469125 Functional Gain - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133346896 chr9:133346897 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_108894 0 0 1 0 2 ASS1 chr9:133346872 3'AG 133346872 Downstream 26bp
chr9 133346897 133346897 1 + C T HNSC 133346896 + 133346876 133346916 41 GAGGCTGGAATCCTGGAGAACCCCAAGGTAATCCCCCAAAC GAGGCTGGAATCCTGGAGAACTCCAAGGTAATCCCCCAAAC < 41bp 0.545751807063836 0.793666437298398 0.28863478 0.9547603 prediction 0.495829260469125 Functional Gain - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133346896 chr9:133346897 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_108894 0 0 1 0 2 ASS1 chr9:133346902 5'GT 133346902 Upstream 6bp
chr19 17597707 17597707 1 + C G CESC 17597703 + 17597683 17597723 41 TGAACCTGCGGCGCGAGCCCCTGGCCTTCTGCCTGGGCACC TGAACCTGCGGCGCGAGCCCCTGGGCTTCTGCCTGGGCACC < 41bp 0.45396961963776 0.74789533848503 0.63957536 0.88809896 prediction 0.49579067697006 Functional Gain - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17597703 chr19:17597707 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_108896 0 0 1 0 1 SLC27A1 chr19:17597766 5'GT 17597766 Upstream 60bp
chr1 234458814 234458814 1 + T G UCEC 234458812 + 234458792 234458832 41 GTCCGGGTCATCGCCATCATCATCATCGGCCTGGGTTTTCT GTCCGGGTCATCGCCATCATCAGCATCGGCCTGGGTTTTCT < 41bp 0.621557710258473 0.86944707623566 0.04656118 0.3595189 prediction 0.495778731954374 Functional Gain - SLC35F3 ENSG00000183780 CDS Human protein_coding chr1:234458812 chr1:234458814 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_108898 0 0 1 0 1 SLC35F3 chr1:234458754 3'AG 234458754 Downstream 61bp
chr12 119588916 119588916 1 + C T HNSC 119588915 + 119588895 119588935 41 TCACCCATGAAAGGGTGTTCCCGCAGCTCCTCCTATGCCAG TCACCCATGAAAGGGTGTTCCTGCAGCTCCTCCTATGCCAG < 41bp 0.503835572490542 0.751713173672882 0.728073 0.8630494 prediction 0.495755202364679 Functional Gain - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119588915 chr12:119588916 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_108900 0 0 1 0 1 SRRM4 chr12:119588822 3'AG 119588822 Downstream 95bp
chr11 64003328 64003328 1 + C T rs61761266 64003327 + 64003307 64003347 41 TACTCGCGCTACCTGCCAGCCCCGGGAGGTGGTGGTGCCCT TACTCGCGCTACCTGCCAGCCTCGGGAGGTGGTGGTGCCCT < 41bp 0.521329695665459 0.769198130597312 0.08414549 0.12862888 prediction 0.495736869863706 Functional Gain - VEGFB ENSG00000173511 CDS Human protein_coding chr11:64003327 chr11:64003328 synonymous SNV . 0 22 hm5C_associated_SNPs_108901 0 0 1 0 1 VEGFB chr11:64003285 3'AG 64003285 Downstream 44bp
chr16 72046103 72046103 1 + T G rs189332001 72046100 + 72046080 72046120 41 GGAGTCAGCCCACAGACTGGCTGTTCGCTTCACCTCCCTGG GGAGTCAGCCCACAGACTGGCTGGTCGCTTCACCTCCCTGG < 41bp 0.346085155170795 0.747858910645523 0.0584476 0.20246726 prediction 0.495717821291046 Functional Gain - DHODH ENSG00000102967 CDS Human protein_coding chr16:72046100 chr16:72046103 nonsynonymous SNV 0.148 3 24 hm5C_associated_SNPs_108903 0 0 1 0 1 DHODH chr16:72046161 5'GT 72046161 Upstream 59bp
chr13 50080880 50080880 1 + T C PAAD 50080878 + 50080858 50080898 41 AATCAGAGAATATAGCTGCTCATGAGAATTGTTTGGTAAGT AATCAGAGAATATAGCTGCTCACGAGAATTGTTTGGTAAGT < 41bp 0.471345611061616 0.747857917466112 0.1869795 0.2209436 prediction 0.495715834932223 Functional Gain - PHF11;SETDB2-PHF11 ENSG00000136147 CDS Human protein_coding chr13:50080878 chr13:50080880 synonymous SNV . 0 23 hm5C_associated_SNPs_108904 0 0 0 0 1 PHF11;SETDB2-PHF11 chr13:50080892 5'GT 50080892 Upstream 13bp
chr11 63143161 63143161 1 + C A LUAD 63143160 + 63143140 63143180 41 GGCTCATTATCAACAATAAACCAGAGGAAGGCTTAAAGGAA GGCTCATTATCAACAATAAACAAGAGGAAGGCTTAAAGGAA < 41bp 0.546151212885129 0.794000562798877 0.418885 0.4368049 prediction 0.495698699827495 Functional Gain - SLC22A9 ENSG00000149742 CDS Human protein_coding chr11:63143160 chr11:63143161 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_108906 0 0 0 0 2 SLC22A9 chr11:63143117 3'AG 63143117 Downstream 45bp
chr11 63143161 63143161 1 + C A LUAD 63143160 + 63143140 63143180 41 GGCTCATTATCAACAATAAACCAGAGGAAGGCTTAAAGGAA GGCTCATTATCAACAATAAACAAGAGGAAGGCTTAAAGGAA < 41bp 0.546151212885129 0.794000562798877 0.418885 0.4368049 prediction 0.495698699827495 Functional Gain - SLC22A9 ENSG00000149742 CDS Human protein_coding chr11:63143160 chr11:63143161 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_108906 0 0 0 0 2 SLC22A9 chr11:63143240 5'GT 63143240 Upstream 80bp
chr1 22927541 22927541 1 + C T rs146256137 22927540 + 22927520 22927560 41 AGTGTCCTCGATGCGCTCATCCGCAGCCCTGAGAGTCTCAG AGTGTCCTCGATGCGCTCATCTGCAGCCCTGAGAGTCTCAG < 41bp 0.501399624591708 0.749241561792473 0.5617919 0.6864885 prediction 0.495683874401531 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22927540 chr1:22927541 nonsynonymous SNV 0.008 3 22 hm5C_associated_SNPs_108907 0 0 0 0 1 EPHA8 chr1:22927581 5'GT 22927581 Upstream 41bp
chr8 22472950 22472950 1 + C A rs7001453 22472949 + 22472929 22472969 41 CATGTGCAGGTGGCGCTTTGCCGAGTTTCAGTACCTGCAGC CATGTGCAGGTGGCGCTTTGCAGAGTTTCAGTACCTGCAGC < 41bp 0.546423118723848 0.794260704479639 0.8098755 0.9158538 prediction 0.495675171511581 Functional Gain - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22472949 chr8:22472950 synonymous SNV . 0 22 hm5C_associated_SNPs_108908 0 0 1 0 1 CCAR2 chr8:22472938 3'AG 22472938 Downstream 13bp
chr1 65690488 65690488 1 + C T UCEC 65690487 + 65690467 65690507 41 CCAGCAGGAGGATGATAAACCCGAAGCAGTTGCTGCCAGGC CCAGCAGGAGGATGATAAACCTGAAGCAGTTGCTGCCAGGC < 41bp 0.514797863926267 0.762613379101683 0.2203809 0.27172464 prediction 0.495631030350832 Functional Gain - AK4 ENSG00000162433 CDS Human protein_coding chr1:65690487 chr1:65690488 synonymous SNV . 0 22 hm5C_associated_SNPs_108912 0 0 1 0 1 AK4 chr1:65690553 5'GT 65690553 Upstream 66bp
chr11 10879804 10879804 1 + C A rs79392141 10879800 + 10879780 10879820 41 CCTCAGCCGCAGCGGCCGTGCTACCTAGGTGATAGCGGAGC CCTCAGCCGCAGCGGCCGTGCTACATAGGTGATAGCGGAGC < 41bp 0.378724320906065 0.747810739800853 0.06543976 0.59154654 prediction 0.495621479601706 Functional Gain - ZBED5-AS1 ENSG00000236287 UTR5 Human antisense chr11:10879800 chr11:10879804 . . 0 25 hm5C_associated_SNPs_108913 0 0 0 0 1 ZBED5-AS1 chr11:10879898 5'GT 10879898 Upstream 95bp
chr1 115576609 115576609 1 + C A READ 115576605 + 115576585 115576625 41 TTTCCCCAGGATATCAATGGCAAACTGTTTCTTCCCAAATA TTTCCCCAGGATATCAATGGCAAAATGTTTCTTCCCAAATA < 41bp 0.358567627466245 0.747788400490043 0.075297385 0.23389831 prediction 0.495576800980086 Functional Gain - TSHB ENSG00000134200 CDS Human protein_coding chr1:115576605 chr1:115576609 nonsynonymous SNV 0.982 1 25 hm5C_associated_SNPs_108916 0 0 0 0 1 TSHB chr1:115576594 3'AG 115576594 Downstream 16bp
chr1 32797309 32797309 1 + C T STAD 32797308 + 32797288 32797328 41 TTGAGAACCTTAGAATGCTGCCGCACGCACCTGGGGTCCAA TTGAGAACCTTAGAATGCTGCTGCACGCACCTGGGGTCCAA < 41bp 0.5302968910359 0.778074082357934 0.33350503 0.36435777 prediction 0.495554382644069 Functional Gain - HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32797308 chr1:32797309 nonsynonymous SNV 0.752 4 22 hm5C_associated_SNPs_108920 0 0 1 0 2 HDAC1 chr1:32797277 3'AG 32797277 Downstream 33bp
chr1 32797309 32797309 1 + C T STAD 32797308 + 32797288 32797328 41 TTGAGAACCTTAGAATGCTGCCGCACGCACCTGGGGTCCAA TTGAGAACCTTAGAATGCTGCTGCACGCACCTGGGGTCCAA < 41bp 0.5302968910359 0.778074082357934 0.33350503 0.36435777 prediction 0.495554382644069 Functional Gain - HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32797308 chr1:32797309 nonsynonymous SNV 0.752 4 22 hm5C_associated_SNPs_108920 0 0 1 0 2 HDAC1 chr1:32797407 5'GT 32797407 Upstream 99bp
chr22 30753022 30753022 1 + C A rs62227732 30753018 + 30752998 30753038 41 TGCCAAGGCAGCGGCCTGAGCGCCCGGCTAGGGCTTTTCGG TGCCAAGGCAGCGGCCTGAGCGCCAGGCTAGGGCTTTTCGG < 41bp 0.622790041406988 0.870567014686569 0.5065084 0.53732324 prediction 0.495553946559161 Functional Gain - CCDC157 ENSG00000187860 UTR5 Human protein_coding chr22:30753018 chr22:30753022 . . 0 25 hm5C_associated_SNPs_108921 0 0 0 0 1 CCDC157 chr22:30753121 5'GT 30753121 Upstream 100bp
chr7 73601971 73601971 1 + C T SKCM 73601970 + 73601950 73601990 41 CAGTGCTGGTGGCCATGGTTCCCGTAGCCAGAAGGAGTTGC CAGTGCTGGTGGCCATGGTTCTCGTAGCCAGAAGGAGTTGC < 41bp 0.505841138573743 0.753610870199362 0.24096236 0.33667135 prediction 0.495539463251238 Functional Gain - EIF4H ENSG00000106682 CDS Human protein_coding chr7:73601970 chr7:73601971 synonymous SNV . 0 22 hm5C_associated_SNPs_108923 0 0 0 0 1 EIF4H chr7:73601941 3'AG 73601941 Downstream 31bp
chr2 27851980 27851980 1 + C G rs140581189 27851979 + 27851959 27851999 41 GCTTCTGGGGGTCCGCGGCACCCAGTGTGTCTGTTGGTGTT GCTTCTGGGGGTCCGCGGCACGCAGTGTGTCTGTTGGTGTT < 41bp 0.444945216276899 0.747764771247829 0.10991722 0.20416158 prediction 0.495529542495659 Functional Gain - GPN1 ENSG00000198522 CDS Human protein_coding chr2:27851979 chr2:27851980 nonsynonymous SNV 0.454 2 22 hm5C_associated_SNPs_108924 0 0 1 0 1 GPN1 chr2:27852036 5'GT 27852036 Upstream 57bp
chr9 130911881 130911881 1 + A G STAD 130911878 + 130911858 130911898 41 CCAGGCCCAGGACTCCACCTCAGACCTGATCCCAGCCCCAC CCAGGCCCAGGACTCCACCTCAGGCCTGATCCCAGCCCCAC < 41bp 0.504963441859839 0.752727135900905 0.5515752 0.9002278 prediction 0.495527388082132 Functional Gain - LCN2 ENSG00000148346 CDS Human protein_coding chr9:130911878 chr9:130911881 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_108925 0 0 0 0 1 LCN2 chr9:130911942 5'GT 130911942 Upstream 62bp
chr19 11558289 11558289 1 + T C STAD 11558287 + 11558267 11558307 41 ACCTTCCAGCACCTTCTGCCCCTGACTTGACGGAGCCCAAG ACCTTCCAGCACCTTCTGCCCCCGACTTGACGGAGCCCAAG < 41bp 0.501298864994339 0.749062019281153 0.04365301 0.025637805 prediction 0.495526308573629 Functional Gain - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11558287 chr19:11558289 synonymous SNV . 0 23 hm5C_associated_SNPs_108926 0 0 1 0 1 PRKCSH chr19:11558254 3'AG 11558254 Downstream 36bp
chr10 71018707 71018707 1 + C A rs371118523 71018703 + 71018683 71018723 41 GGATGAGGGGTCCTTGAATCCTGGCAAGCAGAGGTGAAGAG GGATGAGGGGTCCTTGAATCCTGGAAAGCAGAGGTGAAGAG < 41bp 0.68075894011745 0.928517122765109 0.06813708 0.15416339 prediction 0.495516365295317 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71018703 chr10:71018707 synonymous SNV . 0 25 hm5C_associated_SNPs_108927 0 0 0 0 1 HKDC1 chr10:71018715 5'GT 71018715 Upstream 9bp
chr2 96686970 96686970 1 + C A UCEC 96686969 + 96686949 96686989 41 CAAGACAGAGGACCTGATAGCCTGGGTGTCCCAGTGAGTGA CAAGACAGAGGACCTGATAGCATGGGTGTCCCAGTGAGTGA < 41bp 0.515988752040355 0.763743751388604 0.8026848 0.89946336 prediction 0.495509998696499 Functional Gain - FAHD2CP ENSG00000231584 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:96686969 chr2:96686970 . . 0 22 hm5C_associated_SNPs_108928 0 0 1 1 2 FAHD2CP chr2:96686873 3'AG 96686873 Downstream 98bp
chr2 96686970 96686970 1 + C A UCEC 96686969 + 96686949 96686989 41 CAAGACAGAGGACCTGATAGCCTGGGTGTCCCAGTGAGTGA CAAGACAGAGGACCTGATAGCATGGGTGTCCCAGTGAGTGA < 41bp 0.515988752040355 0.763743751388604 0.8026848 0.89946336 prediction 0.495509998696499 Functional Gain - FAHD2CP ENSG00000231584 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:96686969 chr2:96686970 . . 0 22 hm5C_associated_SNPs_108928 0 0 1 1 2 FAHD2CP chr2:96686981 5'GT 96686981 Upstream 12bp
chr11 22382487 22382487 1 + C A UCEC 22382486 + 22382466 22382506 41 TGGGATATGGAGCAAATGGGCCCCACCTCTAGAGAGGAGTA TGGGATATGGAGCAAATGGGCACCACCTCTAGAGAGGAGTA < 41bp 0.498835249757036 0.74775305340043 0.038965702 0.085042536 prediction 0.495506106800861 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22382486 chr11:22382487 synonymous SNV . 0 22 hm5C_associated_SNPs_108930 0 0 0 0 1 SLC17A6 chr11:22382530 5'GT 22382530 Upstream 44bp
chr5 154173242 154173242 1 + C T HNSC 154173241 + 154173221 154173261 41 CTTCACGCCCCACTCGCCCACCGGAGCCTAGACACATACCT CTTCACGCCCCACTCGCCCACTGGAGCCTAGACACATACCT < 41bp 0.497359778998969 0.747747571673862 0.6849595 0.43403494 prediction 0.495495143347723 Functional Gain - LARP1 ENSG00000155506 CDS Human protein_coding chr5:154173241 chr5:154173242 nonsynonymous SNV 0.012 0 22 hm5C_associated_SNPs_108932 0 0 1 0 2 LARP1 chr5:154173155 3'AG 154173155 Downstream 88bp
chr5 154173242 154173242 1 + C T HNSC 154173241 + 154173221 154173261 41 CTTCACGCCCCACTCGCCCACCGGAGCCTAGACACATACCT CTTCACGCCCCACTCGCCCACTGGAGCCTAGACACATACCT < 41bp 0.497359778998969 0.747747571673862 0.6849595 0.43403494 prediction 0.495495143347723 Functional Gain - LARP1 ENSG00000155506 CDS Human protein_coding chr5:154173241 chr5:154173242 nonsynonymous SNV 0.012 0 22 hm5C_associated_SNPs_108932 0 0 1 0 2 LARP1 chr5:154173283 5'GT 154173283 Upstream 42bp
chr7 102045110 102045110 1 + C A rs118139519 102045109 + 102045089 102045129 41 AATTGCTGCAGAGGAGCAGACCGCAAAGCGCCGGAAGAAGC AATTGCTGCAGAGGAGCAGACAGCAAAGCGCCGGAAGAAGC < 41bp 0.48427538414342 0.747732221708004 0.12695721 0.15110046 prediction 0.495464443416008 Functional Gain - PRKRIP1 ENSG00000128563 CDS Human protein_coding chr7:102045109 chr7:102045110 synonymous SNV . 0 22 hm5C_associated_SNPs_108938 0 0 1 0 2 PRKRIP1 chr7:102045045 3'AG 102045045 Downstream 66bp
chr7 102045110 102045110 1 + C A rs118139519 102045109 + 102045089 102045129 41 AATTGCTGCAGAGGAGCAGACCGCAAAGCGCCGGAAGAAGC AATTGCTGCAGAGGAGCAGACAGCAAAGCGCCGGAAGAAGC < 41bp 0.48427538414342 0.747732221708004 0.12695721 0.15110046 prediction 0.495464443416008 Functional Gain - PRKRIP1 ENSG00000128563 CDS Human protein_coding chr7:102045109 chr7:102045110 synonymous SNV . 0 22 hm5C_associated_SNPs_108938 0 0 1 0 2 PRKRIP1 chr7:102045130 5'GT 102045130 Upstream 21bp
chr3 4714999 4714999 1 + C T SKCM 4714998 + 4714978 4715018 41 ACATGCATGTGGACCGAGATCCCCAGGAACAAGTCACCCCC ACATGCATGTGGACCGAGATCTCCAGGAACAAGTCACCCCC < 41bp 0.505473661657327 0.753203986060146 0.06063187 0.8868103 prediction 0.495460648805639 Functional Gain - ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4714998 chr3:4714999 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_108939 0 0 1 0 1 ITPR1 chr3:4715071 5'GT 4715071 Upstream 73bp
chr2 79349244 79349244 1 + C A HNSC 79349243 + 79349223 79349263 41 TCTGGATTGGCCTCCATGACCCCAAAAAGGTAGGCTGCAGC TCTGGATTGGCCTCCATGACCACAAAAAGGTAGGCTGCAGC < 41bp 0.488710160481006 0.747721957316267 0.028129399 0.0763337 prediction 0.495443914632534 Functional Gain - REG1A ENSG00000115386 CDS Human protein_coding chr2:79349243 chr2:79349244 nonsynonymous SNV 0.491 3 22 hm5C_associated_SNPs_108941 0 0 0 0 1 REG1A chr2:79349251 5'GT 79349251 Upstream 8bp
chr10 118386502 118386502 1 + C A UCEC 118386498 + 118386478 118386518 41 CGGAGACAGCTTTCTTAATACAAGCACTGTCGGTAAAACCC CGGAGACAGCTTTCTTAATACAAGAACTGTCGGTAAAACCC < 41bp 0.365678308014569 0.747718519267665 0.1324791 0.31103665 prediction 0.49543703853533 Functional Gain - PNLIPRP2 ENSG00000165862 CDS Human other chr10:118386498 chr10:118386502 nonsynonymous SNV 0.019 1 25 hm5C_associated_SNPs_108942 0 0 0 0 1 PNLIPRP2 chr10:118386509 5'GT 118386509 Upstream 8bp
chr11 55652977 55652977 1 + C A LUAD 55652976 + 55652956 55652996 41 TGCATGAACTACTTCCTAGACCCAGTCACCATAGACTGTGG TGCATGAACTACTTCCTAGACACAGTCACCATAGACTGTGG < 41bp 0.492419570588924 0.747686023625875 0.03897503 0.09223431 prediction 0.495372047251749 Functional Gain - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55652976 chr11:55652977 nonsynonymous SNV 0.155 3 22 hm5C_associated_SNPs_108945 0 0 0 0 1 TRIM51 chr11:55652901 3'AG 55652901 Downstream 77bp
chr22 24124471 24124471 1 + C A rs28382569 24124470 + 24124450 24124490 41 CCTGGGCCCCGCACCCCTCACCGAGCTGGGCCTGGTGAGGT CCTGGGCCCCGCACCCCTCACAGAGCTGGGCCTGGTGAGGT < 41bp 0.483601854965166 0.747685582348657 0.6498835 0.90269345 prediction 0.495371164697314 Functional Gain - MMP11 ENSG00000099953;ENSG00000267954 CDS Human protein_coding chr22:24124470 chr22:24124471 nonsynonymous SNV 0.467 0 22 hm5C_associated_SNPs_108946 0 0 1 0 1 MMP11 chr22:24124413 3'AG 24124413 Downstream 59bp
chr19 3586949 3586949 1 + C T PAAD 3586948 + 3586928 3586968 41 GCTCCGGGAGCTGCCCAAGTCCCAGCCCTTCACCCTGCGCC GCTCCGGGAGCTGCCCAAGTCTCAGCCCTTCACCCTGCGCC < 41bp 0.507879534466764 0.755539443067837 0.27364278 0.27359682 prediction 0.495319817202146 Functional Gain - GIPC3 ENSG00000179855 CDS Human protein_coding chr19:3586948 chr19:3586949 synonymous SNV . 0 22 hm5C_associated_SNPs_108950 0 0 0 0 1 GIPC3 chr19:3586992 5'GT 3586992 Upstream 44bp
chr2 228141120 228141120 1 + T G HNSC 228141117 + 228141097 228141137 41 TAAGGCCCTAGGGGAGAGCTCAGTGTTTCAACACCAGTTCC TAAGGCCCTAGGGGAGAGCTCAGGGTTTCAACACCAGTTCC < 41bp 0.351085410019101 0.747652159155116 0.57867175 0.9241376 prediction 0.495304318310232 Functional Gain - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228141117 chr2:228141120 nonsynonymous SNV 0.757 1 24 hm5C_associated_SNPs_108951 0 0 0 0 2 COL4A3 chr2:228141101 3'AG 228141101 Downstream 20bp
chr2 228141120 228141120 1 + T G HNSC 228141117 + 228141097 228141137 41 TAAGGCCCTAGGGGAGAGCTCAGTGTTTCAACACCAGTTCC TAAGGCCCTAGGGGAGAGCTCAGGGTTTCAACACCAGTTCC < 41bp 0.351085410019101 0.747652159155116 0.57867175 0.9241376 prediction 0.495304318310232 Functional Gain - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228141117 chr2:228141120 nonsynonymous SNV 0.757 1 24 hm5C_associated_SNPs_108951 0 0 0 0 2 COL4A3 chr2:228141193 5'GT 228141193 Upstream 74bp
chr7 98957173 98957173 1 + T C COAD 98957171 + 98957151 98957191 41 ACTGAGTCTTGTTTCAGGGCCATGACTGCTGCCCAATGCTC ACTGAGTCTTGTTTCAGGGCCACGACTGCTGCCCAATGCTC < 41bp 0.477749324214746 0.747638536708126 0.042124182 0.013213247 prediction 0.495277073416251 Functional Gain - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98957171 chr7:98957173 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_108955 0 0 1 1 1 ARPC1A chr7:98957168 3'AG 98957168 Downstream 6bp
chr14 75470350 75470350 1 + C T UCEC 75470349 + 75470329 75470369 41 GGATTTCAGCTTCCATTATGCCCAACTCCAGTCCAACATCA GGATTTCAGCTTCCATTATGCTCAACTCCAGTCCAACATCA < 41bp 0.530182483435173 0.777815772871757 0.02052319 0.048415303 prediction 0.495266578873166 Functional Gain - EIF2B2 ENSG00000119718 CDS Human protein_coding chr14:75470349 chr14:75470350 synonymous SNV . 0 22 hm5C_associated_SNPs_108956 0 0 1 0 2 EIF2B2 chr14:75470254 3'AG 75470254 Downstream 97bp
chr14 75470350 75470350 1 + C T UCEC 75470349 + 75470329 75470369 41 GGATTTCAGCTTCCATTATGCCCAACTCCAGTCCAACATCA GGATTTCAGCTTCCATTATGCTCAACTCCAGTCCAACATCA < 41bp 0.530182483435173 0.777815772871757 0.02052319 0.048415303 prediction 0.495266578873166 Functional Gain - EIF2B2 ENSG00000119718 CDS Human protein_coding chr14:75470349 chr14:75470350 synonymous SNV . 0 22 hm5C_associated_SNPs_108956 0 0 1 0 2 EIF2B2 chr14:75470402 5'GT 75470402 Upstream 53bp
chr11 118886068 118886068 1 + T G UCEC 118886066 + 118886046 118886086 41 CCAGACCGAGTTGGGGCCAACTTTGATCACAGCTCCAGGAC CCAGACCGAGTTGGGGCCAACTGTGATCACAGCTCCAGGAC < 41bp 0.399978491280356 0.747633140360578 0.027333468 0.07934615 prediction 0.495266280721157 Functional Gain - CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118886066 chr11:118886068 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_108957 0 0 1 2 3 CCDC84 chr11:118885998 3'AG 118885998 Downstream 71bp
chr11 118886068 118886068 1 + T G UCEC 118886066 + 118886046 118886086 41 CCAGACCGAGTTGGGGCCAACTTTGATCACAGCTCCAGGAC CCAGACCGAGTTGGGGCCAACTGTGATCACAGCTCCAGGAC < 41bp 0.399978491280356 0.747633140360578 0.027333468 0.07934615 prediction 0.495266280721157 Functional Gain - CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118886066 chr11:118886068 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_108957 0 0 1 2 3 CCDC84 chr11:118886017 3'AG 118886017 Downstream 52bp
chr11 118886068 118886068 1 + T G UCEC 118886066 + 118886046 118886086 41 CCAGACCGAGTTGGGGCCAACTTTGATCACAGCTCCAGGAC CCAGACCGAGTTGGGGCCAACTGTGATCACAGCTCCAGGAC < 41bp 0.399978491280356 0.747633140360578 0.027333468 0.07934615 prediction 0.495266280721157 Functional Gain - CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118886066 chr11:118886068 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_108957 0 0 1 2 3 CCDC84 chr11:118886149 5'GT 118886149 Upstream 82bp
chr20 31624295 31624295 1 + A G STAD 31624292 + 31624272 31624312 41 TGGGCACCGTCAAATATGTTCTGATGTCCGCACCAGCCACC TGGGCACCGTCAAATATGTTCTGGTGTCCGCACCAGCCACC < 41bp 0.517656794362917 0.76528523221507 0.16607037 0.24350491 prediction 0.495256875704307 Functional Gain - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31624292 chr20:31624295 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_108958 0 0 0 0 1 BPIFB6 chr20:31624251 3'AG 31624251 Downstream 45bp
chr3 187088660 187088660 1 + C G rs76912569 187088659 + 187088639 187088679 41 GTACTGGGAGCACTGGACATCCCAGGGTCAGGTGCGTATGA GTACTGGGAGCACTGGACATCGCAGGGTCAGGTGCGTATGA < 41bp 0.613168611131108 0.860785326618404 0.81302613 0.91664314 prediction 0.495233430974593 Functional Gain - RTP4 ENSG00000136514 CDS Human protein_coding chr3:187088659 chr3:187088660 synonymous SNV . 0 22 hm5C_associated_SNPs_108964 0 0 0 0 1 RTP4 chr3:187088576 3'AG 187088576 Downstream 85bp
chr2 44436411 44436411 1 + T A OV 44436407 + 44436387 44436427 41 TTCAAATGCTCCCAAGGTCTCAGATGAAGCGGTGAAAAAAG TTCAAATGCTCCCAAGGTCTCAGAAGAAGCGGTGAAAAAAG < 41bp 0.432219447117716 0.747612988678744 0.8986894 0.90756404 prediction 0.495225977357489 Functional Gain - PPM1B ENSG00000138032 CDS Human protein_coding chr2:44436407 chr2:44436411 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_108966 0 0 1 0 2 PPM1B chr2:44436349 3'AG 44436349 Downstream 63bp
chr2 44436411 44436411 1 + T A OV 44436407 + 44436387 44436427 41 TTCAAATGCTCCCAAGGTCTCAGATGAAGCGGTGAAAAAAG TTCAAATGCTCCCAAGGTCTCAGAAGAAGCGGTGAAAAAAG < 41bp 0.432219447117716 0.747612988678744 0.8986894 0.90756404 prediction 0.495225977357489 Functional Gain - PPM1B ENSG00000138032 CDS Human protein_coding chr2:44436407 chr2:44436411 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_108966 0 0 1 0 2 PPM1B chr2:44436466 5'GT 44436466 Upstream 56bp
chr2 88484895 88484895 1 + C G CESC 88484894 + 88484874 88484914 41 GTGTCGGATGAAGCCATCACCCAGACCATGGGCCGCTGCTG GTGTCGGATGAAGCCATCACCGAGACCATGGGCCGCTGCTG < 41bp 0.60774851576545 0.85535077311737 0.39822203 0.859718 prediction 0.495204514703842 Functional Gain - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88484894 chr2:88484895 nonsynonymous SNV 0.114 1 22 hm5C_associated_SNPs_108968 0 0 0 0 1 THNSL2 chr2:88484847 3'AG 88484847 Downstream 49bp
chr6 138632587 138632587 1 + C T UCEC 138632586 + 138632566 138632606 41 TGGAGACTGTGCCCCAGCACCCGGAGCCCCGTCCACAGACC TGGAGACTGTGCCCCAGCACCTGGAGCCCCGTCCACAGACC < 41bp 0.509804518187681 0.757380879986153 0.88476574 0.7377677 prediction 0.495152723596945 Functional Gain - ARFGEF3 ENSG00000112379 CDS Human protein_coding chr6:138632586 chr6:138632587 synonymous SNV . 0 22 hm5C_associated_SNPs_108971 0 0 0 0 2 ARFGEF3 chr6:138632544 3'AG 138632544 Downstream 44bp
chr6 138632587 138632587 1 + C T UCEC 138632586 + 138632566 138632606 41 TGGAGACTGTGCCCCAGCACCCGGAGCCCCGTCCACAGACC TGGAGACTGTGCCCCAGCACCTGGAGCCCCGTCCACAGACC < 41bp 0.509804518187681 0.757380879986153 0.88476574 0.7377677 prediction 0.495152723596945 Functional Gain - ARFGEF3 ENSG00000112379 CDS Human protein_coding chr6:138632586 chr6:138632587 synonymous SNV . 0 22 hm5C_associated_SNPs_108971 0 0 0 0 2 ARFGEF3 chr6:138632647 5'GT 138632647 Upstream 61bp
chr19 14805888 14805888 1 + C G rs61995698 14805884 + 14805864 14805904 41 GAGTGGGCATTGCTGGACAGCGCACGGAGGAGCCTGTGCAA GAGTGGGCATTGCTGGACAGCGCAGGGAGGAGCCTGTGCAA < 41bp 0.454369767495223 0.74757451408064 0.53077596 0.78970176 prediction 0.49514902816128 Functional Gain - ZNF333 ENSG00000160961 CDS Human protein_coding chr19:14805884 chr19:14805888 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_108972 0 0 0 0 2 ZNF333 chr19:14805822 3'AG 14805822 Downstream 67bp
chr19 14805888 14805888 1 + C G rs61995698 14805884 + 14805864 14805904 41 GAGTGGGCATTGCTGGACAGCGCACGGAGGAGCCTGTGCAA GAGTGGGCATTGCTGGACAGCGCAGGGAGGAGCCTGTGCAA < 41bp 0.454369767495223 0.74757451408064 0.53077596 0.78970176 prediction 0.49514902816128 Functional Gain - ZNF333 ENSG00000160961 CDS Human protein_coding chr19:14805884 chr19:14805888 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_108972 0 0 0 0 2 ZNF333 chr19:14805945 5'GT 14805945 Upstream 58bp
chr10 75871735 75871735 1 + C G rs2131956 75871731 + 75871711 75871751 41 GGCAGATGCGGCCGATGCTGCTGGCTTCCCTGTCCCCCCTG GGCAGATGCGGCCGATGCTGCTGGGTTCCCTGTCCCCCCTG < 41bp 0.596883220878103 0.84445370233098 0.83371305 0.8811392 prediction 0.495140962905754 Functional Gain - VCL ENSG00000035403 CDS Human protein_coding chr10:75871731 chr10:75871735 synonymous SNV . 0 25 hm5C_associated_SNPs_108973 4 0 0 0 1 VCL chr10:75871667 3'AG 75871667 Downstream 69bp
chr19 1272061 1272061 1 + C A rs200903901 1272057 + 1272037 1272077 41 TTATGACAGTTACGGTAAGTCACACTCCGAGGGCGCCACGC TTATGACAGTTACGGTAAGTCACAATCCGAGGGCGCCACGC < 41bp 0.678981083073784 0.926534463492639 0.031499863 0.01848051 prediction 0.495106760837711 Functional Gain - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1272057 chr19:1272061 nonsynonymous SNV 0.007 1 25 hm5C_associated_SNPs_108979 0 0 1 1 1 CIRBP chr19:1271980 3'AG 1271980 Downstream 82bp
chr1 183204831 183204831 1 + C G rs144355456 183204830 + 183204810 183204850 41 GTCGGAAGCGGAAGCGGTAGCCCGGACGGTGCTGTGGTGCA GTCGGAAGCGGAAGCGGTAGCGCGGACGGTGCTGTGGTGCA < 41bp 0.602142211056125 0.849695108894229 0.7020565 0.8484515 prediction 0.495105795676207 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183204830 chr1:183204831 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_108980 0 0 0 0 1 LAMC2 chr1:183204865 5'GT 183204865 Upstream 35bp
chr15 41105091 41105091 1 + C T STAD 41105090 + 41105070 41105110 41 GCCATGCTGCGGGGACAGGACCCCGAGAGAGGTGAAGGCTG GCCATGCTGCGGGGACAGGACTCCGAGAGAGGTGAAGGCTG < 41bp 0.523622294528353 0.771161025098544 0.3956107 0.8472762 prediction 0.495077461140383 Functional Gain - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105090 chr15:41105091 nonsynonymous SNV 0.652 4 22 hm5C_associated_SNPs_108983 0 0 0 0 1 ZFYVE19 chr15:41105100 5'GT 41105100 Upstream 10bp
chr18 9513078 9513078 1 + C A UCEC 9513077 + 9513057 9513097 41 TCCTGCCCCCCACCAGCAGCCCCAGTGAACACCGCAGGGTG TCCTGCCCCCCACCAGCAGCCACAGTGAACACCGCAGGGTG < 41bp 0.484067304656558 0.747538594631549 0.68321073 0.54097664 prediction 0.495077189263099 Functional Gain - RALBP1 ENSG00000017797 CDS Human protein_coding chr18:9513077 chr18:9513078 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_108984 0 0 1 0 1 RALBP1 chr18:9512989 3'AG 9512989 Downstream 90bp
chrX 152014936 152014936 1 + C A STAD 152014935 + 152014915 152014955 41 CTCATTTGACAGAGGACACTCCCAAAGTGAATGCTGACATA CTCATTTGACAGAGGACACTCACAAAGTGAATGCTGACATA < 41bp 0.501933959975724 0.749470697054917 0.048916698 0.03422597 prediction 0.495073474158386 Functional Gain - NSDHL ENSG00000147383 CDS Human protein_coding chrX:152014935 chrX:152014936 nonsynonymous SNV 0.005 2 22 hm5C_associated_SNPs_108985 0 0 1 0 1 NSDHL chrX:152014976 5'GT 152014976 Upstream 41bp
chr19 58132766 58132766 1 + C A GBM 58132762 + 58132742 58132782 41 CAGAAAGTTCACACTGCAGGCAGGCTTTAGGAGTGCTTTGA CAGAAAGTTCACACTGCAGGCAGGATTTAGGAGTGCTTTGA < 41bp 0.465480715284997 0.747529415908321 0.3845492 0.76187456 prediction 0.495058831816643 Functional Gain - ZNF134 ENSG00000213762 CDS Human protein_coding chr19:58132762 chr19:58132766 nonsynonymous SNV 0.182 1 25 hm5C_associated_SNPs_108986 0 0 1 0 1 ZNF134 chr19:58132861 5'GT 58132861 Upstream 96bp
chr3 100428243 100428243 1 + C G rs112759386 100428242 + 100428222 100428262 41 GGCAGCCGGGACCCAGCCAGCCCTGCGCCTCGCGCCGTCGC GGCAGCCGGGACCCAGCCAGCGCTGCGCCTCGCGCCGTCGC < 41bp 0.437041380445655 0.747517362681947 0.19622323 0.2899454 prediction 0.495034725363893 Functional Gain - TFG ENSG00000114354 UTR5 Human protein_coding chr3:100428242 chr3:100428243 . . 0 22 hm5C_associated_SNPs_108989 0 0 0 0 1 TFG chr3:100428275 5'GT 100428275 Upstream 33bp
chr19 17973025 17973025 1 + C T SKCM 17973024 + 17973004 17973044 41 GACCACCGCAGGCGCTGTCACCCAGTGCTGTAAGCTGCCTG GACCACCGCAGGCGCTGTCACTCAGTGCTGTAAGCTGCCTG < 41bp 0.498318010320381 0.747516585764645 0.26513886 0.25483838 prediction 0.495033171529289 Functional Gain - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17973024 chr19:17973025 synonymous SNV . 0 22 hm5C_associated_SNPs_108990 0 0 1 0 1 RPL18A chr19:17973032 5'GT 17973032 Upstream 8bp
chr21 47337538 47337538 1 + C T SKCM 47337537 + 47337517 47337557 41 GGACAGTATGCCATCCCTCACCCGGATGTGAGTCTTCACTT GGACAGTATGCCATCCCTCACTCGGATGTGAGTCTTCACTT < 41bp 0.505528793640534 0.753038653328458 0.12315178 0.07260239 prediction 0.495019719375847 Functional Gain - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47337537 chr21:47337538 nonsynonymous SNV 0.990 3 22 hm5C_associated_SNPs_108991 0 0 1 0 2 PCBP3 chr21:47337502 3'AG 47337502 Downstream 37bp
chr21 47337538 47337538 1 + C T SKCM 47337537 + 47337517 47337557 41 GGACAGTATGCCATCCCTCACCCGGATGTGAGTCTTCACTT GGACAGTATGCCATCCCTCACTCGGATGTGAGTCTTCACTT < 41bp 0.505528793640534 0.753038653328458 0.12315178 0.07260239 prediction 0.495019719375847 Functional Gain - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47337537 chr21:47337538 nonsynonymous SNV 0.990 3 22 hm5C_associated_SNPs_108991 0 0 1 0 2 PCBP3 chr21:47337543 5'GT 47337543 Upstream 6bp
chr2 234237163 234237163 1 + C T PRAD 234237162 + 234237142 234237182 41 GATCCGCAAAGTACAGCATGCCCCACTTGAGATGGGTCCCC GATCCGCAAAGTACAGCATGCTCCACTTGAGATGGGTCCCC < 41bp 0.542384057878512 0.7898905800113 0.020167649 0.12166354 prediction 0.495013044265577 Functional Gain - SAG ENSG00000130561 CDS Human protein_coding chr2:234237162 chr2:234237163 synonymous SNV . 0 22 hm5C_associated_SNPs_108994 0 0 0 0 2 SAG chr2:234237124 3'AG 234237124 Downstream 40bp
chr2 234237163 234237163 1 + C T PRAD 234237162 + 234237142 234237182 41 GATCCGCAAAGTACAGCATGCCCCACTTGAGATGGGTCCCC GATCCGCAAAGTACAGCATGCTCCACTTGAGATGGGTCCCC < 41bp 0.542384057878512 0.7898905800113 0.020167649 0.12166354 prediction 0.495013044265577 Functional Gain - SAG ENSG00000130561 CDS Human protein_coding chr2:234237162 chr2:234237163 synonymous SNV . 0 22 hm5C_associated_SNPs_108994 0 0 0 0 2 SAG chr2:234237259 5'GT 234237259 Upstream 97bp
chr22 29695762 29695762 1 + C T SKCM 29695761 + 29695741 29695781 41 GGTGGAGGAAGACGAGGTGGCCCTGGGGGGCCCCCTGGACC GGTGGAGGAAGACGAGGTGGCTCTGGGGGGCCCCCTGGACC < 41bp 0.506257568229506 0.753756537167398 0.3887503 0.62494415 prediction 0.494997937875783 Functional Gain - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695761 chr22:29695762 nonsynonymous SNV 0.994 2 22 hm5C_associated_SNPs_109000 0 0 1 0 1 EWSR1 chr22:29695841 5'GT 29695841 Upstream 80bp
chr1 164781365 164781365 1 + C G SKCM 164781361 + 164781341 164781381 41 GCCCATGGAAGCCAAGCTAACTCGCCCTCAACTCCCAACTC GCCCATGGAAGCCAAGCTAACTCGGCCTCAACTCCCAACTC < 41bp 0.56322969341768 0.81072386723259 0.11298528 0.31608704 prediction 0.49498834762982 Functional Gain - PBX1 ENSG00000185630 CDS Human protein_coding chr1:164781361 chr1:164781365 nonsynonymous SNV 0.987 4 25 hm5C_associated_SNPs_109002 0 0 0 0 1 PBX1 chr1:164781386 5'GT 164781386 Upstream 22bp
chr17 26817726 26817726 1 + C A UCEC 26817725 + 26817705 26817745 41 CTGCCCATCCCTAGGCTAATCCTGGGCTTCATGCTGGTCAC CTGCCCATCCCTAGGCTAATCATGGGCTTCATGCTGGTCAC < 41bp 0.482226407333295 0.74748866881216 0.19123462 0.72669905 prediction 0.494977337624321 Functional Gain - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26817725 chr17:26817726 nonsynonymous SNV 0.435 2 22 hm5C_associated_SNPs_109005 0 0 0 0 1 SLC13A2 chr17:26817719 3'AG 26817719 Downstream 8bp
chr16 28967323 28967323 1 + C T SKCM 28967322 + 28967302 28967342 41 TCTGGACAACTCTCCTCTGTCCCCACCTTCACCAAGGACCA TCTGGACAACTCTCCTCTGTCTCCACCTTCACCAAGGACCA < 41bp 0.471813550030781 0.747471531912178 0.024551272 0.4740362 prediction 0.494943063824356 Functional Gain - NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28967322 chr16:28967323 synonymous SNV . 0 22 hm5C_associated_SNPs_109009 0 0 1 0 2 NFATC2IP chr16:28967299 3'AG 28967299 Downstream 25bp
chr16 28967323 28967323 1 + C T SKCM 28967322 + 28967302 28967342 41 TCTGGACAACTCTCCTCTGTCCCCACCTTCACCAAGGACCA TCTGGACAACTCTCCTCTGTCTCCACCTTCACCAAGGACCA < 41bp 0.471813550030781 0.747471531912178 0.024551272 0.4740362 prediction 0.494943063824356 Functional Gain - NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28967322 chr16:28967323 synonymous SNV . 0 22 hm5C_associated_SNPs_109009 0 0 1 0 2 NFATC2IP chr16:28967379 5'GT 28967379 Upstream 57bp
chr20 2846928 2846928 1 + C T SKCM 2846927 + 2846907 2846947 41 AGTATGCTTCCCGCGTGGGTCCCGAGCAGAAGGTCAAGGCT AGTATGCTTCCCGCGTGGGTCTCGAGCAGAAGGTCAAGGCT < 41bp 0.544015954450439 0.791477990592414 0.31853288 0.45396376 prediction 0.494924072283951 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2846927 chr20:2846928 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_109011 0 0 1 0 2 VPS16 chr20:2846858 3'AG 2846858 Downstream 71bp
chr20 2846928 2846928 1 + C T SKCM 2846927 + 2846907 2846947 41 AGTATGCTTCCCGCGTGGGTCCCGAGCAGAAGGTCAAGGCT AGTATGCTTCCCGCGTGGGTCTCGAGCAGAAGGTCAAGGCT < 41bp 0.544015954450439 0.791477990592414 0.31853288 0.45396376 prediction 0.494924072283951 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2846927 chr20:2846928 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_109011 0 0 1 0 2 VPS16 chr20:2846961 5'GT 2846961 Upstream 34bp
chr3 108568055 108568055 1 + C G LUSC 108568054 + 108568034 108568074 41 ATGAACAAATGAAAGCCCGACCAGAGAAATCTGTAAATAAG ATGAACAAATGAAAGCCCGACGAGAGAAATCTGTAAATAAG < 41bp 0.443091930668075 0.747451733772185 0.20064366 0.4309861 prediction 0.494903467544369 Functional Gain - TRAT1 ENSG00000163519 CDS Human protein_coding chr3:108568054 chr3:108568055 nonsynonymous SNV 0.833 4 22 hm5C_associated_SNPs_109013 0 0 0 0 2 TRAT1 chr3:108568013 3'AG 108568013 Downstream 43bp
chr3 108568055 108568055 1 + C G LUSC 108568054 + 108568034 108568074 41 ATGAACAAATGAAAGCCCGACCAGAGAAATCTGTAAATAAG ATGAACAAATGAAAGCCCGACGAGAGAAATCTGTAAATAAG < 41bp 0.443091930668075 0.747451733772185 0.20064366 0.4309861 prediction 0.494903467544369 Functional Gain - TRAT1 ENSG00000163519 CDS Human protein_coding chr3:108568054 chr3:108568055 nonsynonymous SNV 0.833 4 22 hm5C_associated_SNPs_109013 0 0 0 0 2 TRAT1 chr3:108568101 5'GT 108568101 Upstream 47bp
chr16 31373508 31373508 1 + T C STAD 31373506 + 31373486 31373526 41 ATGTCTCAGGAGAATGTGGACATGAGGGACTCTTACCTGGG ATGTCTCAGGAGAATGTGGACACGAGGGACTCTTACCTGGG < 41bp 0.556721276393996 0.804171636508414 0.31350902 0.2477802 prediction 0.494900720228837 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31373506 chr16:31373508 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_109014 0 0 0 0 1 ITGAX chr16:31373525 5'GT 31373525 Upstream 18bp
chr19 30102813 30102813 1 + T G UCEC 30102811 + 30102791 30102831 41 CATGAACTCTGGAAACAGTACATCAGGGACCTGTGCAGTGG CATGAACTCTGGAAACAGTACAGCAGGGACCTGTGCAGTGG < 41bp 0.634092955362605 0.881542231117115 0.04838538 0.09174627 prediction 0.494898551509019 Functional Gain - POP4 ENSG00000105171 CDS Human protein_coding chr19:30102811 chr19:30102813 nonsynonymous SNV 0.862 1 23 hm5C_associated_SNPs_109015 0 0 1 0 2 POP4 chr19:30102769 3'AG 30102769 Downstream 45bp
chr19 30102813 30102813 1 + T G UCEC 30102811 + 30102791 30102831 41 CATGAACTCTGGAAACAGTACATCAGGGACCTGTGCAGTGG CATGAACTCTGGAAACAGTACAGCAGGGACCTGTGCAGTGG < 41bp 0.634092955362605 0.881542231117115 0.04838538 0.09174627 prediction 0.494898551509019 Functional Gain - POP4 ENSG00000105171 CDS Human protein_coding chr19:30102811 chr19:30102813 nonsynonymous SNV 0.862 1 23 hm5C_associated_SNPs_109015 0 0 1 0 2 POP4 chr19:30102846 5'GT 30102846 Upstream 34bp
chr19 55505764 55505764 1 + T G UCEC 55505761 + 55505741 55505781 41 GAGTTAAGGGAATGAAGTTCCTGTGTGAGGCTTTGAGGAAA GAGTTAAGGGAATGAAGTTCCTGGGTGAGGCTTTGAGGAAA < 41bp 0.360681773267735 0.747444432811431 0.08234504 0.43208572 prediction 0.494888865622861 Functional Gain - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55505761 chr19:55505764 nonsynonymous SNV 0.117 1 24 hm5C_associated_SNPs_109016 0 0 0 0 1 NLRP2 chr19:55505807 5'GT 55505807 Upstream 44bp
chr21 45733850 45733850 1 + C A UCEC 45733849 + 45733829 45733869 41 GGCCGACTGGCTGTTCATCCCCGAGGCTCCACCCGAGGACG GGCCGACTGGCTGTTCATCCCAGAGGCTCCACCCGAGGACG < 41bp 0.510678294435272 0.758117869387709 0.5443389 0.89384043 prediction 0.494879149904873 Functional Gain - PFKL ENSG00000141959 CDS Human protein_coding chr21:45733849 chr21:45733850 synonymous SNV . 0 22 hm5C_associated_SNPs_109018 0 0 1 0 2 PFKL chr21:45733796 3'AG 45733796 Downstream 55bp
chr21 45733850 45733850 1 + C A UCEC 45733849 + 45733829 45733869 41 GGCCGACTGGCTGTTCATCCCCGAGGCTCCACCCGAGGACG GGCCGACTGGCTGTTCATCCCAGAGGCTCCACCCGAGGACG < 41bp 0.510678294435272 0.758117869387709 0.5443389 0.89384043 prediction 0.494879149904873 Functional Gain - PFKL ENSG00000141959 CDS Human protein_coding chr21:45733849 chr21:45733850 synonymous SNV . 0 22 hm5C_associated_SNPs_109018 0 0 1 0 2 PFKL chr21:45733904 5'GT 45733904 Upstream 55bp
chr17 40948304 40948304 1 + C A rs200519604 40948303 + 40948283 40948323 41 GGCAGCTTCCCCACCTCCCGCCGCAACAGCCTACAGCGCTC GGCAGCTTCCCCACCTCCCGCAGCAACAGCCTACAGCGCTC < 41bp 0.495049766299591 0.747427883721053 0.3481494 0.7797966 prediction 0.494855767442106 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40948303 chr17:40948304 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_109019 1 0 0 0 1 WNK4 chr17:40948340 5'GT 40948340 Upstream 37bp
chr17 56274393 56274393 1 + C T UCEC 56274392 + 56274372 56274412 41 CCCCAAAACAAGAACAGAGTCCGCAACCAGATCAACGCGCT CCCCAAAACAAGAACAGAGTCTGCAACCAGATCAACGCGCT < 41bp 0.493617426328094 0.747427835077735 0.008747071 0.026631415 prediction 0.494855670155469 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56274392 chr17:56274393 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_109020 0 0 0 0 1 EPX chr17:56274300 3'AG 56274300 Downstream 94bp
chr3 128979534 128979534 1 + C T UCEC 128979533 + 128979513 128979553 41 AACCTGGTCACAGATTCAAACCGCAGCATTGCCACGCTGGC AACCTGGTCACAGATTCAAACTGCAGCATTGCCACGCTGGC < 41bp 0.53980845604031 0.787233793035708 0.16692883 0.2615841 prediction 0.494850673990797 Functional Gain - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128979533 chr3:128979534 nonsynonymous SNV 0.988 4 22 hm5C_associated_SNPs_109021 0 0 0 0 1 COPG1 chr3:128979462 3'AG 128979462 Downstream 73bp
chr12 100787170 100787170 1 + T C SKCM 100787168 + 100787148 100787188 41 GTCTTTGGAGCTGCCATCTTCTTAACATCGACTCTGAACAT GTCTTTGGAGCTGCCATCTTCTCAACATCGACTCTGAACAT < 41bp 0.449340081010154 0.747421815110173 0.15649283 0.21159303 prediction 0.494843630220345 Functional Gain - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100787168 chr12:100787170 nonsynonymous SNV 0.797 1 23 hm5C_associated_SNPs_109023 0 0 0 0 1 SLC17A8 chr12:100787261 5'GT 100787261 Upstream 92bp
chr19 14578389 14578389 1 + C T SKCM 14578388 + 14578368 14578408 41 CCGCCACAGAGCTCCCCCATCCAGGAATCCACTGCTCCCGA CCGCCACAGAGCTCCCCCATCTAGGAATCCACTGCTCCCGA < 41bp 0.504590421796906 0.752009727629655 0.89014447 0.39938802 prediction 0.494838611665499 Functional Gain - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14578388 chr19:14578389 stopgain 0.016 0 22 hm5C_associated_SNPs_109025 0 0 1 0 2 PKN1 chr19:14578377 3'AG 14578377 Downstream 13bp
chr19 14578389 14578389 1 + C T SKCM 14578388 + 14578368 14578408 41 CCGCCACAGAGCTCCCCCATCCAGGAATCCACTGCTCCCGA CCGCCACAGAGCTCCCCCATCTAGGAATCCACTGCTCCCGA < 41bp 0.504590421796906 0.752009727629655 0.89014447 0.39938802 prediction 0.494838611665499 Functional Gain - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14578388 chr19:14578389 stopgain 0.016 0 22 hm5C_associated_SNPs_109025 0 0 1 0 2 PKN1 chr19:14578453 5'GT 14578453 Upstream 65bp
chr20 62868740 62868740 1 + C T SKCM 62868739 + 62868719 62868759 41 TGCCATGGTGCAGCTGCAGTCCCAGGTAGGTGGTGCCGCCC TGCCATGGTGCAGCTGCAGTCTCAGGTAGGTGGTGCCGCCC < 41bp 0.506359476336645 0.753777817915085 0.7483144 0.47635323 prediction 0.494836683156881 Functional Gain - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62868739 chr20:62868740 synonymous SNV . 0 22 hm5C_associated_SNPs_109027 0 0 0 0 1 MYT1 chr20:62868743 5'GT 62868743 Upstream 4bp
chr16 29841948 29841948 1 + C T SKCM 29841947 + 29841927 29841967 41 GGACCAGAACAGCAACGTGTCCCGTGTGGAGGTCGGGCCAA GGACCAGAACAGCAACGTGTCTCGTGTGGAGGTCGGGCCAA < 41bp 0.502995763242182 0.750401279409898 0.20621333 0.2285097 prediction 0.494811032335432 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29841947 chr16:29841948 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_109030 0 0 0 0 1 MVP chr16:29841995 5'GT 29841995 Upstream 48bp
chrX 70523490 70523490 1 + C T SKCM 70523489 + 70523469 70523509 41 CTTCTTAGGTTTACCAAGGCCCTGAGAGTGATGCTACTCCA CTTCTTAGGTTTACCAAGGCCTTGAGAGTGATGCTACTCCA < 41bp 0.494184969853159 0.747387895439901 0.16713661 0.16257417 prediction 0.494775790879803 Functional Gain - ITGB1BP2 ENSG00000147166 CDS Human protein_coding chrX:70523489 chrX:70523490 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_109032 0 0 0 0 2 ITGB1BP2 chrX:70523477 3'AG 70523477 Downstream 14bp
chrX 70523490 70523490 1 + C T SKCM 70523489 + 70523469 70523509 41 CTTCTTAGGTTTACCAAGGCCCTGAGAGTGATGCTACTCCA CTTCTTAGGTTTACCAAGGCCTTGAGAGTGATGCTACTCCA < 41bp 0.494184969853159 0.747387895439901 0.16713661 0.16257417 prediction 0.494775790879803 Functional Gain - ITGB1BP2 ENSG00000147166 CDS Human protein_coding chrX:70523489 chrX:70523490 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_109032 0 0 0 0 2 ITGB1BP2 chrX:70523547 5'GT 70523547 Upstream 58bp
chr16 20494478 20494478 1 + C G LUSC 20494477 + 20494457 20494497 41 GCATGTGAAGTCAGTGACAGCCCCATACAAGTACCCAAGAA GCATGTGAAGTCAGTGACAGCGCCATACAAGTACCCAAGAA < 41bp 0.609206232733404 0.856582109224934 0.20514762 0.25455463 prediction 0.49475175298306 Functional Gain - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20494477 chr16:20494478 synonymous SNV . 0 22 hm5C_associated_SNPs_109034 0 0 0 0 2 ACSM2A chr16:20494380 3'AG 20494380 Downstream 99bp
chr16 20494478 20494478 1 + C G LUSC 20494477 + 20494457 20494497 41 GCATGTGAAGTCAGTGACAGCCCCATACAAGTACCCAAGAA GCATGTGAAGTCAGTGACAGCGCCATACAAGTACCCAAGAA < 41bp 0.609206232733404 0.856582109224934 0.20514762 0.25455463 prediction 0.49475175298306 Functional Gain - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20494477 chr16:20494478 synonymous SNV . 0 22 hm5C_associated_SNPs_109034 0 0 0 0 2 ACSM2A chr16:20494499 5'GT 20494499 Upstream 22bp
chr19 11560122 11560122 1 + C T LUSC 11560121 + 11560101 11560141 41 AGAGACCATGGTGACCAGCACCACAGAGCCCAGTCGCTGCG AGAGACCATGGTGACCAGCACTACAGAGCCCAGTCGCTGCG < 41bp 0.548141424413043 0.7955156479935 0.106604695 0.5039986 prediction 0.494748447160913 Functional Gain - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11560121 chr19:11560122 synonymous SNV . 0 22 hm5C_associated_SNPs_109035 0 0 1 0 1 PRKCSH chr19:11560081 3'AG 11560081 Downstream 42bp
chr1 221057558 221057558 1 + C A LUAD 221057557 + 221057537 221057577 41 GTGAAGGTGTGGTTCCAGAACCGGCGGATGAAGTGGCGGCA GTGAAGGTGTGGTTCCAGAACAGGCGGATGAAGTGGCGGCA < 41bp 0.493336912658456 0.747373996039577 0.90821254 0.89628077 prediction 0.494747992079153 Functional Gain - HLX ENSG00000136630 CDS Human protein_coding chr1:221057557 chr1:221057558 synonymous SNV . 0 22 hm5C_associated_SNPs_109036 0 0 0 0 1 HLX chr1:221057537 3'AG 221057537 Downstream 22bp
chr11 63996729 63996729 1 + C G rs200547112 63996725 + 63996705 63996745 41 ACCCTCCACCGCAGGTGAACCTGCCGCTGCTCACCCTGAGC ACCCTCCACCGCAGGTGAACCTGCGGCTGCTCACCCTGAGC < 41bp 0.448148631667392 0.747368108429799 0.91120106 0.9061361 prediction 0.494736216859597 Functional Gain - NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63996725 chr11:63996729 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_109037 0 0 0 0 2 NUDT22 chr11:63996719 3'AG 63996719 Downstream 11bp
chr11 63996729 63996729 1 + C G rs200547112 63996725 + 63996705 63996745 41 ACCCTCCACCGCAGGTGAACCTGCCGCTGCTCACCCTGAGC ACCCTCCACCGCAGGTGAACCTGCGGCTGCTCACCCTGAGC < 41bp 0.448148631667392 0.747368108429799 0.91120106 0.9061361 prediction 0.494736216859597 Functional Gain - NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63996725 chr11:63996729 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_109037 0 0 0 0 2 NUDT22 chr11:63996816 5'GT 63996816 Upstream 88bp
chr11 610244 610244 1 + T G MESO 610242 + 610222 610262 41 CCCCGAGAAGGAGCCTGGGACATGGAGGATGTGGCCCCCAC CCCCGAGAAGGAGCCTGGGACAGGGAGGATGTGGCCCCCAC < 41bp 0.441944286672441 0.747359130031727 0.3787509 0.85869277 prediction 0.494718260063454 Functional Gain - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:610242 chr11:610244 nonsynonymous SNV 0.090 1 23 hm5C_associated_SNPs_109039 0 0 1 0 1 PHRF1 chr11:610196 3'AG 610196 Downstream 49bp
chr11 15222432 15222432 1 + C T SKCM 15222431 + 15222411 15222451 41 CAGTTTCCGGTGCTTGTACCCCCAGGCGCTCCGCACGCTGG CAGTTTCCGGTGCTTGTACCCTCAGGCGCTCCGCACGCTGG < 41bp 0.490175127732468 0.747335361289534 0.93592703 0.2683086 prediction 0.494670722579069 Functional Gain - INSC ENSG00000188487 CDS Human protein_coding chr11:15222431 chr11:15222432 synonymous SNV . 0 22 hm5C_associated_SNPs_109044 0 0 0 0 2 INSC chr11:15222370 3'AG 15222370 Downstream 63bp
chr11 15222432 15222432 1 + C T SKCM 15222431 + 15222411 15222451 41 CAGTTTCCGGTGCTTGTACCCCCAGGCGCTCCGCACGCTGG CAGTTTCCGGTGCTTGTACCCTCAGGCGCTCCGCACGCTGG < 41bp 0.490175127732468 0.747335361289534 0.93592703 0.2683086 prediction 0.494670722579069 Functional Gain - INSC ENSG00000188487 CDS Human protein_coding chr11:15222431 chr11:15222432 synonymous SNV . 0 22 hm5C_associated_SNPs_109044 0 0 0 0 2 INSC chr11:15222495 5'GT 15222495 Upstream 64bp
chr1 114442519 114442519 1 + C A ESCA 114442515 + 114442495 114442535 41 TTCTCAAGAAGGAAAAGGAGCAGACACCTACCTATGGCAAA TTCTCAAGAAGGAAAAGGAGCAGAAACCTACCTATGGCAAA < 41bp 0.360431962866851 0.747313079023984 0.26828504 0.2841951 prediction 0.494626158047969 Functional Gain - AP4B1-AS1 ENSG00000134262 CDS Human protein_coding chr1:114442515 chr1:114442519 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_109045 0 0 0 0 1 AP4B1-AS1 chr1:114442494 3'AG 114442494 Downstream 26bp
chr8 28385634 28385634 1 + T C UCEC 28385632 + 28385612 28385652 41 CCGGGGCATCTGGGAAACAACGTGGATACAAGAACGCTGCA CCGGGGCATCTGGGAAACAACGCGGATACAAGAACGCTGCA < 41bp 0.490263603795614 0.747304955132922 0.8024431 0.845075 prediction 0.494609910265845 Functional Gain - FZD3 ENSG00000104290 CDS Human protein_coding chr8:28385632 chr8:28385634 nonsynonymous SNV 0.993 5 23 hm5C_associated_SNPs_109046 0 0 1 0 1 FZD3 chr8:28385681 5'GT 28385681 Upstream 48bp
chr7 298630 298630 1 + C G rs139144760 298626 + 298606 298646 41 TGGAAGGTTTGGGAAGTATTCGCACGACGAGCTCTCCATCC TGGAAGGTTTGGGAAGTATTCGCAGGACGAGCTCTCCATCC < 41bp 0.588271620395411 0.835573920585838 0.2313512 0.35633492 prediction 0.494604600380854 Functional Gain - FAM20C ENSG00000177706 CDS Human protein_coding chr7:298626 chr7:298630 nonsynonymous SNV 0.010 1 25 hm5C_associated_SNPs_109047 0 0 0 0 2 FAM20C chr7:298612 3'AG 298612 Downstream 19bp
chr7 298630 298630 1 + C G rs139144760 298626 + 298606 298646 41 TGGAAGGTTTGGGAAGTATTCGCACGACGAGCTCTCCATCC TGGAAGGTTTGGGAAGTATTCGCAGGACGAGCTCTCCATCC < 41bp 0.588271620395411 0.835573920585838 0.2313512 0.35633492 prediction 0.494604600380854 Functional Gain - FAM20C ENSG00000177706 CDS Human protein_coding chr7:298626 chr7:298630 nonsynonymous SNV 0.010 1 25 hm5C_associated_SNPs_109047 0 0 0 0 2 FAM20C chr7:298671 5'GT 298671 Upstream 42bp
chr1 36553076 36553076 1 + C A COAD 36553075 + 36553055 36553095 41 GCTGAGCTGCAGGAGGACATCCGGCACCTGGAGGAGGATCT GCTGAGCTGCAGGAGGACATCAGGCACCTGGAGGAGGATCT < 41bp 0.527976617852804 0.775278770793018 0.5627771 0.87453604 prediction 0.494604305880428 Functional Gain - TEKT2 ENSG00000092850 CDS Human protein_coding chr1:36553075 chr1:36553076 synonymous SNV . 0 22 hm5C_associated_SNPs_109048 0 0 0 0 1 TEKT2 chr1:36553040 3'AG 36553040 Downstream 37bp
chr2 63280175 63280175 1 + T G STAD 63280173 + 63280153 63280193 41 TACGGCATGAACGGGCTGGGCCTGGCCGGGCCCGCCATGGA TACGGCATGAACGGGCTGGGCCGGGCCGGGCCCGCCATGGA < 41bp 0.41691449614562 0.747297929368351 0.095058054 0.2540955 prediction 0.494595858736703 Functional Gain - OTX1 ENSG00000115507 CDS Human protein_coding chr2:63280173 chr2:63280175 nonsynonymous SNV 0.958 3 23 hm5C_associated_SNPs_109049 0 0 0 0 1 OTX1 chr2:63280222 5'GT 63280222 Upstream 48bp
chr1 25812257 25812257 1 + C T UCEC 25812256 + 25812236 25812276 41 GTTAGAAGAAGCCACTGCTGCCCGGGCTGTTGCGTTTGCTG GTTAGAAGAAGCCACTGCTGCTCGGGCTGTTGCGTTTGCTG < 41bp 0.498000802514193 0.747294262842034 0.19357714 0.22420067 prediction 0.494588525684068 Functional Gain - TMEM57 ENSG00000204178 CDS Human protein_coding chr1:25812256 chr1:25812257 synonymous SNV . 0 22 hm5C_associated_SNPs_109050 0 0 1 0 1 TMEM57 chr1:25812286 5'GT 25812286 Upstream 30bp
chr22 40080328 40080328 1 + C A ESCA 40080327 + 40080307 40080347 41 CACCCCCAAGTCCCTTCTCCCCGGATGCCTCCAGCCCTCTC CACCCCCAAGTCCCTTCTCCCAGGATGCCTCCAGCCCTCTC < 41bp 0.49014634542021 0.747290930386424 0.42156166 0.8736212 prediction 0.494581860772849 Functional Gain - CACNA1I ENSG00000100346 CDS Human protein_coding chr22:40080327 chr22:40080328 nonsynonymous SNV 0.896 1 22 hm5C_associated_SNPs_109051 0 0 0 0 1 CACNA1I chr22:40080307 3'AG 40080307 Downstream 22bp
chr12 112919967 112919967 1 + T C UCEC 112919965 + 112919945 112919985 41 ACGTCAAAGAAAGCGCCGCTCATGACTATACGCTAAGAGAA ACGTCAAAGAAAGCGCCGCTCACGACTATACGCTAAGAGAA < 41bp 0.459741028255691 0.747288056232561 0.09654939 0.093672276 prediction 0.494576112465123 Functional Gain - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112919965 chr12:112919967 synonymous SNV . 0 23 hm5C_associated_SNPs_109052 0 0 0 0 1 PTPN11 chr12:112920009 5'GT 112920009 Upstream 43bp
chr19 10368916 10368916 1 + C T SKCM 10368915 + 10368895 10368935 41 CAGGAGGTGTTGCCCATGGCCCCCGGGGCCCCACAAGTTAC CAGGAGGTGTTGCCCATGGCCTCCGGGGCCCCACAAGTTAC < 41bp 0.532594146866613 0.779877953299052 0.15148452 0.19906095 prediction 0.494567612864879 Functional Gain - MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10368915 chr19:10368916 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_109054 0 0 1 0 2 MRPL4 chr19:10368898 3'AG 10368898 Downstream 19bp
chr19 10368916 10368916 1 + C T SKCM 10368915 + 10368895 10368935 41 CAGGAGGTGTTGCCCATGGCCCCCGGGGCCCCACAAGTTAC CAGGAGGTGTTGCCCATGGCCTCCGGGGCCCCACAAGTTAC < 41bp 0.532594146866613 0.779877953299052 0.15148452 0.19906095 prediction 0.494567612864879 Functional Gain - MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10368915 chr19:10368916 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_109054 0 0 1 0 2 MRPL4 chr19:10369004 5'GT 10369004 Upstream 89bp
chr1 159171348 159171348 1 - G C rs2746046 159171349 - 159171329 159171369 41 GGCTGCATGTTGTCTGCAGGCCACATCTCCTCAGGACTCCC GGCTGCATGTTGTCTGCAGGCGACATCTCCTCAGGACTCCC < 41bp 0.441635473202885 0.747274928687108 0.11184254 0.098003566 prediction 0.494549857374216 Functional Gain - CADM3-AS1 ENSG00000225670 ncRNA_exonic Human antisense chr1:159171349 chr1:159171348 . . 0 22 hm5C_associated_SNPs_109057 0 0 0 0 1 CADM3-AS1 chr1:159171411 3'AG 159171411 Downstream 64bp
chr5 37701218 37701218 1 + C A UCEC 37701214 + 37701194 37701234 41 ATTTAATAAACCACTTTTTTCAGCCTCGGGTCTTCCCACCA ATTTAATAAACCACTTTTTTCAGCATCGGGTCTTCCCACCA < 41bp 0.353659847094051 0.7472625805984 0.21865496 0.17396632 prediction 0.4945251611968 Functional Gain - WDR70 ENSG00000082068 CDS Human protein_coding chr5:37701214 chr5:37701218 synonymous SNV . 0 25 hm5C_associated_SNPs_109060 0 0 1 0 2 WDR70 chr5:37701160 3'AG 37701160 Downstream 59bp
chr5 37701218 37701218 1 + C A UCEC 37701214 + 37701194 37701234 41 ATTTAATAAACCACTTTTTTCAGCCTCGGGTCTTCCCACCA ATTTAATAAACCACTTTTTTCAGCATCGGGTCTTCCCACCA < 41bp 0.353659847094051 0.7472625805984 0.21865496 0.17396632 prediction 0.4945251611968 Functional Gain - WDR70 ENSG00000082068 CDS Human protein_coding chr5:37701214 chr5:37701218 synonymous SNV . 0 25 hm5C_associated_SNPs_109060 0 0 1 0 2 WDR70 chr5:37701244 5'GT 37701244 Upstream 27bp
chr17 32646540 32646540 1 + T G ESCA 32646537 + 32646517 32646557 41 CAAGATGAAGGTTTCTGCAGCGCTTCTGTGCCTGCTGCTCA CAAGATGAAGGTTTCTGCAGCGCGTCTGTGCCTGCTGCTCA < 41bp 0.362140053632341 0.747256170786333 0.13076496 0.19306767 prediction 0.494512341572665 Functional Gain - CCL8 ENSG00000108700 CDS Human protein_coding chr17:32646537 chr17:32646540 nonsynonymous SNV 0.005 2 24 hm5C_associated_SNPs_109061 0 0 0 0 1 CCL8 chr17:32646596 5'GT 32646596 Upstream 57bp
chr3 133191246 133191246 1 + C T SKCM 133191245 + 133191225 133191265 41 CACTGGCATGACATGGAGCTCCAGAACCTGGGCGCTGTGGT CACTGGCATGACATGGAGCTCTAGAACCTGGGCGCTGTGGT < 41bp 0.500669036086872 0.747924448950128 0.3460387 0.26874107 prediction 0.494510825726511 Functional Gain - BFSP2 ENSG00000170819 CDS Human protein_coding chr3:133191245 chr3:133191246 stopgain 0.996 1 22 hm5C_associated_SNPs_109062 0 0 0 0 1 BFSP2 chr3:133191189 3'AG 133191189 Downstream 58bp
chr12 133197878 133197878 1 + C A ESCA 133197874 + 133197854 133197894 41 TACAAGATCAATGGCACCACCACCCGCACGCTCATCAAGGC TACAAGATCAATGGCACCACCACCAGCACGCTCATCAAGGC < 41bp 0.322999256493046 0.747255411712577 0.26928556 0.32848296 prediction 0.494510823425154 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133197874 chr12:133197878 nonsynonymous SNV 0.077 4 25 hm5C_associated_SNPs_109063 0 0 0 0 3 P2RX2 chr12:133197841 3'AG 133197841 Downstream 38bp
chr12 133197878 133197878 1 + C A ESCA 133197874 + 133197854 133197894 41 TACAAGATCAATGGCACCACCACCCGCACGCTCATCAAGGC TACAAGATCAATGGCACCACCACCAGCACGCTCATCAAGGC < 41bp 0.322999256493046 0.747255411712577 0.26928556 0.32848296 prediction 0.494510823425154 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133197874 chr12:133197878 nonsynonymous SNV 0.077 4 25 hm5C_associated_SNPs_109063 0 0 0 0 3 P2RX2 chr12:133197931 5'GT 133197931 Upstream 54bp
chr12 133197878 133197878 1 + C A ESCA 133197874 + 133197854 133197894 41 TACAAGATCAATGGCACCACCACCCGCACGCTCATCAAGGC TACAAGATCAATGGCACCACCACCAGCACGCTCATCAAGGC < 41bp 0.322999256493046 0.747255411712577 0.26928556 0.32848296 prediction 0.494510823425154 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133197874 chr12:133197878 nonsynonymous SNV 0.077 4 25 hm5C_associated_SNPs_109063 0 0 0 0 3 P2RX2 chr12:133197950 5'GT 133197950 Upstream 73bp
chr17 5126671 5126671 1 + C A LUAD 5126670 + 5126650 5126690 41 GACACAGTACAGGATGAGGCCCAGACCCACAGAGACAACGA GACACAGTACAGGATGAGGCCAAGACCCACAGAGACAACGA < 41bp 0.52985154931266 0.77709906276805 0.114852756 0.17520899 prediction 0.49449502691078 Functional Gain - SCIMP ENSG00000161929 CDS Human antisense chr17:5126670 chr17:5126671 synonymous SNV . 0 22 hm5C_associated_SNPs_109066 0 0 0 0 1 LOC100130950 chr17:5126612 3'AG 5126612 Downstream 60bp
chr10 70719916 70719916 1 + C A UCEC 70719915 + 70719895 70719935 41 GGAGAAACTAGAGAGAAAAGCCCCAAACTGAAGAATGGATT GGAGAAACTAGAGAGAAAAGCACCAAACTGAAGAATGGATT < 41bp 0.506875765640672 0.754120335173394 0.15354374 0.22153589 prediction 0.494489139065445 Functional Gain - DDX21 ENSG00000165732 CDS Human protein_coding chr10:70719915 chr10:70719916 nonsynonymous SNV 0.752 0 22 hm5C_associated_SNPs_109067 0 0 1 0 1 DDX21 chr10:70720005 5'GT 70720005 Upstream 90bp
chr16 28883214 28883214 1 + C T UCEC 28883213 + 28883193 28883233 41 CTTCCCCCAGAGTTGCCCCCCCGCATCCCCATTGAAGAGGG CTTCCCCCAGAGTTGCCCCCCTGCATCCCCATTGAAGAGGG < 41bp 0.475263804417722 0.747231296306625 0.07871902 0.1341362 prediction 0.494462592613249 Functional Gain - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28883213 chr16:28883214 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_109069 0 0 1 0 1 SH2B1 chr16:28883304 5'GT 28883304 Upstream 91bp
chr15 83784639 83784639 1 + T C LAML 83784637 + 83784617 83784657 41 ACCAGCGTGGTGAACCTCATCATAGGACTGGAGCAAGATGG ACCAGCGTGGTGAACCTCATCACAGGACTGGAGCAAGATGG < 41bp 0.475596939260786 0.74722941050107 0.35039937 0.4826668 prediction 0.494458821002141 Functional Gain - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83784637 chr15:83784639 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_109070 0 0 0 0 1 TM6SF1 chr15:83784694 5'GT 83784694 Upstream 56bp
chr10 45480371 45480371 1 + A G STAD 45480368 + 45480348 45480388 41 GCGCCCCCGGTGAGGCCCAGCGCATCCGGCGACACCGGTTC GCGCCCCCGGTGAGGCCCAGCGCGTCCGGCGACACCGGTTC < 41bp 0.500328236959135 0.747550840942979 0.3382408 0.24260715 prediction 0.494445207967688 Functional Gain - RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45480368 chr10:45480371 nonsynonymous SNV 0.860 0 24 hm5C_associated_SNPs_109072 0 0 1 0 1 RASSF4 chr10:45480418 5'GT 45480418 Upstream 48bp
chr10 75674576 75674576 1 + C A rs528721328 75674572 + 75674552 75674592 41 CCAAGGAGGGCAGGTGTGCGCAGCCATCCCGGACTATACAG CCAAGGAGGGCAGGTGTGCGCAGCAATCCCGGACTATACAG < 41bp 0.679878689073738 0.927090966712814 0.42558736 0.5377746 prediction 0.494424555278151 Functional Gain - PLAU ENSG00000122861 CDS Human protein_coding chr10:75674572 chr10:75674576 nonsynonymous SNV 0.967 2 25 hm5C_associated_SNPs_109074 0 0 0 0 2 PLAU chr10:75674534 3'AG 75674534 Downstream 43bp
chr10 75674576 75674576 1 + C A rs528721328 75674572 + 75674552 75674592 41 CCAAGGAGGGCAGGTGTGCGCAGCCATCCCGGACTATACAG CCAAGGAGGGCAGGTGTGCGCAGCAATCCCGGACTATACAG < 41bp 0.679878689073738 0.927090966712814 0.42558736 0.5377746 prediction 0.494424555278151 Functional Gain - PLAU ENSG00000122861 CDS Human protein_coding chr10:75674572 chr10:75674576 nonsynonymous SNV 0.967 2 25 hm5C_associated_SNPs_109074 0 0 0 0 2 PLAU chr10:75674674 5'GT 75674674 Upstream 99bp
chr7 129098231 129098231 1 + C A THYM 129098227 + 129098207 129098247 41 TGGTGCCACCTCCACCCTCACAGGCACCCCTCTCTGCTGAG TGGTGCCACCTCCACCCTCACAGGAACCCCTCTCTGCTGAG < 41bp 0.680564752722168 0.927764143778659 0.9103503 0.9223566 prediction 0.494398782112982 Functional Gain - STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129098227 chr7:129098231 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_109075 0 0 1 0 1 STRIP2 chr7:129098291 5'GT 129098291 Upstream 61bp
chr17 41365218 41365218 1 + A G COAD 41365215 + 41365195 41365235 41 TGTGCCTTGTGAAGGAACTGCTGATGCCAGCTTCGTGACTT TGTGCCTTGTGAAGGAACTGCTGGTGCCAGCTTCGTGACTT < 41bp 0.500447125152576 0.74764630662876 0.14223248 0.25209063 prediction 0.494398362952367 Functional Gain - TMEM106A ENSG00000184988 CDS Human protein_coding chr17:41365215 chr17:41365218 nonsynonymous SNV 0.809 0 24 hm5C_associated_SNPs_109076 0 0 1 0 2 TMEM106A chr17:41365209 3'AG 41365209 Downstream 10bp
chr17 41365218 41365218 1 + A G COAD 41365215 + 41365195 41365235 41 TGTGCCTTGTGAAGGAACTGCTGATGCCAGCTTCGTGACTT TGTGCCTTGTGAAGGAACTGCTGGTGCCAGCTTCGTGACTT < 41bp 0.500447125152576 0.74764630662876 0.14223248 0.25209063 prediction 0.494398362952367 Functional Gain - TMEM106A ENSG00000184988 CDS Human protein_coding chr17:41365215 chr17:41365218 nonsynonymous SNV 0.809 0 24 hm5C_associated_SNPs_109076 0 0 1 0 2 TMEM106A chr17:41365271 5'GT 41365271 Upstream 54bp
chr3 53223927 53223927 1 + C A rs1075865 53223926 + 53223906 53223946 41 AACCAAGAGGCTGGGAGTGACCGGAAACATCAAAATCCACC AACCAAGAGGCTGGGAGTGACAGGAAACATCAAAATCCACC < 41bp 0.529223112093979 0.776417628918023 0.049254984 0.050870985 prediction 0.494389033648089 Functional Gain - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53223926 chr3:53223927 synonymous SNV . 0 22 hm5C_associated_SNPs_109077 0 0 0 0 2 PRKCD chr3:53223889 3'AG 53223889 Downstream 39bp
chr3 53223927 53223927 1 + C A rs1075865 53223926 + 53223906 53223946 41 AACCAAGAGGCTGGGAGTGACCGGAAACATCAAAATCCACC AACCAAGAGGCTGGGAGTGACAGGAAACATCAAAATCCACC < 41bp 0.529223112093979 0.776417628918023 0.049254984 0.050870985 prediction 0.494389033648089 Functional Gain - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53223926 chr3:53223927 synonymous SNV . 0 22 hm5C_associated_SNPs_109077 0 0 0 0 2 PRKCD chr3:53224017 5'GT 53224017 Upstream 91bp
chr19 42818989 42818989 1 + C T UCEC 42818988 + 42818968 42819008 41 TACCTGAGCTGCTCCAGTGGCCGCAGCTTCCGCTCAGTGCG TACCTGAGCTGCTCCAGTGGCTGCAGCTTCCGCTCAGTGCG < 41bp 0.527012305138187 0.77416841506045 0.3590263 0.7009335 prediction 0.494312219844525 Functional Gain - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42818988 chr19:42818989 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_109082 0 0 1 0 2 TMEM145 chr19:42818944 3'AG 42818944 Downstream 46bp
chr19 42818989 42818989 1 + C T UCEC 42818988 + 42818968 42819008 41 TACCTGAGCTGCTCCAGTGGCCGCAGCTTCCGCTCAGTGCG TACCTGAGCTGCTCCAGTGGCTGCAGCTTCCGCTCAGTGCG < 41bp 0.527012305138187 0.77416841506045 0.3590263 0.7009335 prediction 0.494312219844525 Functional Gain - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42818988 chr19:42818989 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_109082 0 0 1 0 2 TMEM145 chr19:42819003 5'GT 42819003 Upstream 15bp
chr11 1908789 1908789 1 + C A STAD 1908788 + 1908768 1908808 41 TTGTGGAAGGGGGCCCGGCTCCCTAGGCGTCCCATCTCGGT TTGTGGAAGGGGGCCCGGCTCACTAGGCGTCCCATCTCGGT < 41bp 0.503040578086731 0.750177437012306 0.16101387 0.28761348 prediction 0.49427371785115 Functional Gain - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1908788 chr11:1908789 nonsynonymous SNV 0.092 3 22 hm5C_associated_SNPs_109088 0 0 0 0 2 LSP1 chr11:1908704 3'AG 1908704 Downstream 86bp
chr11 1908789 1908789 1 + C A STAD 1908788 + 1908768 1908808 41 TTGTGGAAGGGGGCCCGGCTCCCTAGGCGTCCCATCTCGGT TTGTGGAAGGGGGCCCGGCTCACTAGGCGTCCCATCTCGGT < 41bp 0.503040578086731 0.750177437012306 0.16101387 0.28761348 prediction 0.49427371785115 Functional Gain - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1908788 chr11:1908789 nonsynonymous SNV 0.092 3 22 hm5C_associated_SNPs_109088 0 0 0 0 2 LSP1 chr11:1908806 5'GT 1908806 Upstream 18bp
chr10 106019527 106019527 1 + C A GBM 106019526 + 106019506 106019546 41 GACCCCTATGAGAAAGCTTGCCAGAAGATGATCTTAGAGTT GACCCCTATGAGAAAGCTTGCAAGAAGATGATCTTAGAGTT < 41bp 0.529185983732596 0.776311263871057 0.32183373 0.46521744 prediction 0.494250560276922 Functional Gain - GSTO1 ENSG00000148834 CDS Human protein_coding chr10:106019526 chr10:106019527 nonsynonymous SNV 0.980 4 22 hm5C_associated_SNPs_109092 0 0 1 0 1 GSTO1 chr10:106019556 5'GT 106019556 Upstream 30bp
chr17 73723294 73723294 1 + C T SKCM 73723293 + 73723273 73723313 41 AGCAAACCGCTGCAAGAAGGCCCCAGTGAAGAGCTGCACGG AGCAAACCGCTGCAAGAAGGCTCCAGTGAAGAGCTGCACGG < 41bp 0.512918507603653 0.760043189181222 0.40386802 0.8044201 prediction 0.494249363155139 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73723293 chr17:73723294 synonymous SNV . 0 22 hm5C_associated_SNPs_109093 0 0 0 0 2 ITGB4 chr17:73723275 3'AG 73723275 Downstream 20bp
chr17 73723294 73723294 1 + C T SKCM 73723293 + 73723273 73723313 41 AGCAAACCGCTGCAAGAAGGCCCCAGTGAAGAGCTGCACGG AGCAAACCGCTGCAAGAAGGCTCCAGTGAAGAGCTGCACGG < 41bp 0.512918507603653 0.760043189181222 0.40386802 0.8044201 prediction 0.494249363155139 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73723293 chr17:73723294 synonymous SNV . 0 22 hm5C_associated_SNPs_109093 0 0 0 0 2 ITGB4 chr17:73723357 5'GT 73723357 Upstream 64bp
chr3 52726942 52726942 1 + C G rs147065672 52726938 + 52726918 52726958 41 GATCACAATCATAGATAGTCCGAGCTTCATCGTATCTCCAC GATCACAATCATAGATAGTCCGAGGTTCATCGTATCTCCAC < 41bp 0.57105810553164 0.818174517189541 0.30139518 0.8429254 prediction 0.494232823315801 Functional Gain - GNL3 ENSG00000163938 CDS Human protein_coding chr3:52726938 chr3:52726942 nonsynonymous SNV 0.079 0 25 hm5C_associated_SNPs_109096 0 0 1 0 1 GNL3 chr3:52726888 3'AG 52726888 Downstream 55bp
chr9 139879173 139879173 1 + C A LUSC 139879172 + 139879152 139879192 41 CTCGCTCCTCCAGCCATGGCCCTGAGTGACATCCGAGTGGC CTCGCTCCTCCAGCCATGGCCATGAGTGACATCCGAGTGGC < 41bp 0.493155502885294 0.747102544082534 0.15322095 0.4624409 prediction 0.494205088165067 Functional Gain - LCNL1 ENSG00000214402 CDS Human protein_coding chr9:139879172 chr9:139879173 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_109099 0 0 0 0 1 LCNL1 chr9:139879165 3'AG 139879165 Downstream 9bp
chr15 74178880 74178880 1 + C A rs145669593 74178876 + 74178856 74178896 41 GGAAGGGTGCAGGGGCTGTGCAGTCCCTCTTCCCCTGGTTC GGAAGGGTGCAGGGGCTGTGCAGTACCTCTTCCCCTGGTTC < 41bp 0.340680394393617 0.747091747478657 0.25615007 0.21532834 prediction 0.494183494957314 Functional Gain - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74178876 chr15:74178880 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_109100 0 0 0 0 2 TBC1D21 chr15:74178853 3'AG 74178853 Downstream 28bp
chr15 74178880 74178880 1 + C A rs145669593 74178876 + 74178856 74178896 41 GGAAGGGTGCAGGGGCTGTGCAGTCCCTCTTCCCCTGGTTC GGAAGGGTGCAGGGGCTGTGCAGTACCTCTTCCCCTGGTTC < 41bp 0.340680394393617 0.747091747478657 0.25615007 0.21532834 prediction 0.494183494957314 Functional Gain - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74178876 chr15:74178880 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_109100 0 0 0 0 2 TBC1D21 chr15:74178953 5'GT 74178953 Upstream 74bp
chr1 33746006 33746006 1 + C T SKCM 33746005 + 33745985 33746025 41 GGTCCGCCTGTCCTTGTAGTCCCCTATCCCATCCTGGCCTC GGTCCGCCTGTCCTTGTAGTCTCCTATCCCATCCTGGCCTC < 41bp 0.529917732357487 0.777004331514498 0.10769662 0.25134093 prediction 0.494173198314021 Functional Gain - ZNF362 ENSG00000160094 CDS Human protein_coding chr1:33746005 chr1:33746006 nonsynonymous SNV 0.986 1 22 hm5C_associated_SNPs_109101 0 0 1 0 1 ZNF362 chr1:33746058 5'GT 33746058 Upstream 53bp
chr17 72470778 72470778 1 + C A STAD 72470777 + 72470757 72470797 41 CTGTTTGCAGTGGGTGCCACCCACAGTGCCAGCATCCAGGA CTGTTTGCAGTGGGTGCCACCAACAGTGCCAGCATCCAGGA < 41bp 0.51264275647804 0.759717067622836 0.03822151 0.12544343 prediction 0.494148622289592 Functional Gain - CD300A ENSG00000167851 CDS Human protein_coding chr17:72470777 chr17:72470778 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_109103 0 0 0 0 1 CD300A chr17:72470824 5'GT 72470824 Upstream 47bp
chr12 7947114 7947114 1 + C A rs545520952 7947113 + 7947093 7947133 41 GGTGGCAGAAAAACAACTGGCCGAAGAATAGCAATGGTGTG GGTGGCAGAAAAACAACTGGCAGAAGAATAGCAATGGTGTG < 41bp 0.54203036610411 0.789103842746195 0.29992825 0.82380366 prediction 0.49414695328417 Functional Gain - NANOG ENSG00000111704 CDS Human protein_coding chr12:7947113 chr12:7947114 nonsynonymous SNV 0.097 1 22 hm5C_associated_SNPs_109104 0 0 0 0 2 NANOG chr12:7947053 3'AG 7947053 Downstream 62bp
chr12 7947114 7947114 1 + C A rs545520952 7947113 + 7947093 7947133 41 GGTGGCAGAAAAACAACTGGCCGAAGAATAGCAATGGTGTG GGTGGCAGAAAAACAACTGGCAGAAGAATAGCAATGGTGTG < 41bp 0.54203036610411 0.789103842746195 0.29992825 0.82380366 prediction 0.49414695328417 Functional Gain - NANOG ENSG00000111704 CDS Human protein_coding chr12:7947113 chr12:7947114 nonsynonymous SNV 0.097 1 22 hm5C_associated_SNPs_109104 0 0 0 0 2 NANOG chr12:7947139 5'GT 7947139 Upstream 26bp
chr15 40656723 40656723 1 + C A LUSC 40656722 + 40656702 40656742 41 GACTGTTGGGGGCCCGGCTGCCCGACTTCTCCAAGCCTTTG GACTGTTGGGGGCCCGGCTGCACGACTTCTCCAAGCCTTTG < 41bp 0.535046617543467 0.782105817655348 0.035723954 0.029680222 prediction 0.494118400223761 Functional Gain - DISP2 ENSG00000140323 CDS Human protein_coding chr15:40656722 chr15:40656723 nonsynonymous SNV 0.097 4 22 hm5C_associated_SNPs_109107 0 0 0 0 1 DISP2 chr15:40656745 5'GT 40656745 Upstream 23bp
chr1 8403861 8403861 1 + C G LUSC 8403857 + 8403837 8403877 41 CGGGGCATGGGCGTGGACATCTCTCTGCTGAGCTGCCAGTA CGGGGCATGGGCGTGGACATCTCTGTGCTGAGCTGCCAGTA < 41bp 0.467687299876581 0.747052931041207 0.4836955 0.4525568 prediction 0.494105862082414 Functional Gain - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8403857 chr1:8403861 nonsynonymous SNV 0.981 4 25 hm5C_associated_SNPs_109109 0 0 0 0 1 SLC45A1 chr1:8403807 3'AG 8403807 Downstream 55bp
chr19 10745669 10745669 1 + T C UCEC 10745667 + 10745647 10745687 41 CAGTGATCATTCTGAGTATCCTTGAAGTCATTATCATCTTG CAGTGATCATTCTGAGTATCCTCGAAGTCATTATCATCTTG < 41bp 0.466712655734208 0.747050958604892 0.044009805 0.18963474 prediction 0.494101917209784 Functional Gain - SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10745667 chr19:10745669 synonymous SNV . 0 23 hm5C_associated_SNPs_109111 0 0 0 0 2 SLC44A2 chr19:10745650 3'AG 10745650 Downstream 20bp
chr19 10745669 10745669 1 + T C UCEC 10745667 + 10745647 10745687 41 CAGTGATCATTCTGAGTATCCTTGAAGTCATTATCATCTTG CAGTGATCATTCTGAGTATCCTCGAAGTCATTATCATCTTG < 41bp 0.466712655734208 0.747050958604892 0.044009805 0.18963474 prediction 0.494101917209784 Functional Gain - SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10745667 chr19:10745669 synonymous SNV . 0 23 hm5C_associated_SNPs_109111 0 0 0 0 2 SLC44A2 chr19:10745749 5'GT 10745749 Upstream 81bp
chr9 124089725 124089725 1 + C G rs567372749 124089721 + 124089701 124089741 41 AGGAGCTGCTCAGGGTGCTGCGGGCCCAACCTGTGCAGGTG AGGAGCTGCTCAGGGTGCTGCGGGGCCAACCTGTGCAGGTG < 41bp 0.57286029606047 0.819908738374655 0.9077034 0.92948025 prediction 0.49409688462837 Functional Gain - GSN ENSG00000148180 CDS Human protein_coding chr9:124089721 chr9:124089725 nonsynonymous SNV 0.979 0 25 hm5C_associated_SNPs_109112 0 0 1 0 1 GSN chr9:124089760 5'GT 124089760 Upstream 36bp
chr1 154962678 154962678 1 + C G rs146865554 154962677 + 154962657 154962697 41 CCCCTCCAGATCCTGTATATCCGCAGCATCTCCCCTTTCCC CCCCTCCAGATCCTGTATATCGGCAGCATCTCCCCTTTCCC < 41bp 0.615746590927138 0.862793340019817 0.21814707 0.88213 prediction 0.494093498185358 Functional Gain - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962677 chr1:154962678 nonsynonymous SNV 0.978 2 22 hm5C_associated_SNPs_109113 0 0 1 0 2 FLAD1 chr1:154962635 3'AG 154962635 Downstream 44bp
chr1 154962678 154962678 1 + C G rs146865554 154962677 + 154962657 154962697 41 CCCCTCCAGATCCTGTATATCCGCAGCATCTCCCCTTTCCC CCCCTCCAGATCCTGTATATCGGCAGCATCTCCCCTTTCCC < 41bp 0.615746590927138 0.862793340019817 0.21814707 0.88213 prediction 0.494093498185358 Functional Gain - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962677 chr1:154962678 nonsynonymous SNV 0.978 2 22 hm5C_associated_SNPs_109113 0 0 1 0 2 FLAD1 chr1:154962733 5'GT 154962733 Upstream 56bp
chr18 9535701 9535701 1 + T C LIHC 9535699 + 9535679 9535719 41 ATCATTTGAATCAAGCAATTCATGAGGAGCGCGAGGCCATC ATCATTTGAATCAAGCAATTCACGAGGAGCGCGAGGCCATC < 41bp 0.567258167893036 0.81430186268796 0.14960787 0.1341852 prediction 0.494087389589847 Functional Gain - RALBP1 ENSG00000017797 CDS Human protein_coding chr18:9535699 chr18:9535701 synonymous SNV . 0 23 hm5C_associated_SNPs_109114 0 0 1 0 1 RALBP1 chr18:9535669 3'AG 9535669 Downstream 33bp
chr19 44514462 44514462 1 + C A STAD 44514458 + 44514438 44514478 41 GAAGCAGGACCACATGAAGACTGCCCTTGCCAGCAAATCTG GAAGCAGGACCACATGAAGACTGCACTTGCCAGCAAATCTG < 41bp 0.368238966525976 0.747030537617945 0.059589237 0.1260567 prediction 0.49406107523589 Functional Gain - ZNF230 ENSG00000159882 CDS Human protein_coding chr19:44514458 chr19:44514462 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_109118 0 0 1 0 1 ZNF230 chr19:44514421 3'AG 44514421 Downstream 42bp
chr2 15770942 15770942 1 + T G UCEC 15770939 + 15770919 15770959 41 TGTGGATATTTTGGCACCTACTGTTCAAGAGTTGGCTGCCC TGTGGATATTTTGGCACCTACTGGTCAAGAGTTGGCTGCCC < 41bp 0.36114785187615 0.747028730837866 0.090539426 0.07112822 prediction 0.494057461675733 Functional Gain - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15770939 chr2:15770942 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_109119 0 0 1 0 1 DDX1 chr2:15770900 3'AG 15770900 Downstream 43bp
chrX 50028241 50028241 1 + T C STAD 50028239 + 50028219 50028259 41 CCAGCAAAATTGTGCCCAGTCATCATGACCCATCTGAAAAG CCAGCAAAATTGTGCCCAGTCACCATGACCCATCTGAAAAG < 41bp 0.472511503667816 0.747017022119678 0.014725983 0.033042222 prediction 0.494034044239356 Functional Gain - CCNB3 ENSG00000147082 CDS Human protein_coding chrX:50028239 chrX:50028241 synonymous SNV . 0 23 hm5C_associated_SNPs_109122 0 0 0 0 1 CCNB3 chrX:50028259 5'GT 50028259 Upstream 19bp
chr1 159175263 159175263 1 + C A LUAD 159175259 + 159175239 159175279 41 TATGTCCTCCAGGCGGAGCTCTCCCCCTCAACTGAGAACTC TATGTCCTCCAGGCGGAGCTCTCCACCTCAACTGAGAACTC < 41bp 0.323029485954094 0.747014541050216 0.14806178 0.9122124 prediction 0.494029082100432 Functional Gain - ACKR1 ENSG00000213088 CDS Human protein_coding chr1:159175259 chr1:159175263 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_109123 0 0 0 0 1 ACKR1 chr1:159175251 3'AG 159175251 Downstream 13bp
chr1 196759231 196759231 1 + T A LUAD 196759227 + 196759207 196759247 41 ATTAGCAATGGTGATACCACCTCCTTTCTACTAAAAGTGTA ATTAGCAATGGTGATACCACCTCCATTCTACTAAAAGTGTA < 41bp 0.429663815272188 0.747014205128528 0.0398075 0.9556565 prediction 0.494028410257056 Functional Gain - CFHR3 ENSG00000116785 CDS Human protein_coding chr1:196759227 chr1:196759231 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_109124 0 0 0 0 1 CFHR3 chr1:196759175 3'AG 196759175 Downstream 57bp
chr15 41857305 41857305 1 + A G UCEC 41857302 + 41857282 41857322 41 TGTGGCCTGGATGCCAGGTGCTGATGGCCGAGCTCTGCTAC TGTGGCCTGGATGCCAGGTGCTGGTGGCCGAGCTCTGCTAC < 41bp 0.514850815554871 0.761863335176241 0.4337375 0.70492584 prediction 0.494025039242741 Functional Gain - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41857302 chr15:41857305 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_109125 0 0 1 0 2 TYRO3 chr15:41857224 3'AG 41857224 Downstream 82bp
chr15 41857305 41857305 1 + A G UCEC 41857302 + 41857282 41857322 41 TGTGGCCTGGATGCCAGGTGCTGATGGCCGAGCTCTGCTAC TGTGGCCTGGATGCCAGGTGCTGGTGGCCGAGCTCTGCTAC < 41bp 0.514850815554871 0.761863335176241 0.4337375 0.70492584 prediction 0.494025039242741 Functional Gain - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41857302 chr15:41857305 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_109125 0 0 1 0 2 TYRO3 chr15:41857339 5'GT 41857339 Upstream 35bp
chr1 52880495 52880495 1 + C T UCEC 52880494 + 52880474 52880514 41 AGACGTCACCGCAGCAGGTCCCGAGATCGGCGGCACAGATC AGACGTCACCGCAGCAGGTCCTGAGATCGGCGGCACAGATC < 41bp 0.494505765400701 0.747006846293291 0.2683949 0.22259533 prediction 0.494013692586583 Functional Gain - PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52880494 chr1:52880495 stopgain 0.985 1 22 hm5C_associated_SNPs_109126 0 0 1 0 2 PRPF38A chr1:52880434 3'AG 52880434 Downstream 62bp
chr1 52880495 52880495 1 + C T UCEC 52880494 + 52880474 52880514 41 AGACGTCACCGCAGCAGGTCCCGAGATCGGCGGCACAGATC AGACGTCACCGCAGCAGGTCCTGAGATCGGCGGCACAGATC < 41bp 0.494505765400701 0.747006846293291 0.2683949 0.22259533 prediction 0.494013692586583 Functional Gain - PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52880494 chr1:52880495 stopgain 0.985 1 22 hm5C_associated_SNPs_109126 0 0 1 0 2 PRPF38A chr1:52880531 5'GT 52880531 Upstream 37bp
chr8 144126088 144126088 1 + C T SARC 144126087 + 144126067 144126107 41 ACCTGCCCTCTGCCCTGGCACCCCAGGGACTCACTGCCAAA ACCTGCCCTCTGCCCTGGCACTCCAGGGACTCACTGCCAAA < 41bp 0.516338483249012 0.763340757673926 0.1943067 0.94191414 prediction 0.494004548849829 Functional Gain - C8orf31 ENSG00000177335 CDS Human processed_transcript chr8:144126087 chr8:144126088 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_109127 0 0 0 4 1 C8orf31 chr8:144126066 3'AG 144126066 Downstream 23bp
chr7 97833423 97833423 1 + C A THCA 97833422 + 97833402 97833442 41 CCGCACTCGGCGCCTTACTCCCGGTTCTCCATCTCTCCCGC CCGCACTCGGCGCCTTACTCCAGGTTCTCCATCTCTCCCGC < 41bp 0.482423823149716 0.746997585373448 0.92814845 0.94661736 prediction 0.493995170746897 Functional Gain - LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97833422 chr7:97833423 synonymous SNV . 0 22 hm5C_associated_SNPs_109128 0 0 1 0 1 LMTK2 chr7:97833498 5'GT 97833498 Upstream 76bp
chr19 50434202 50434202 1 + C G rs150555056 50434198 + 50434178 50434218 41 TCGTAGACTATGGGAAACTCCCCCCGGCCCCTGCCCCCCTG TCGTAGACTATGGGAAACTCCCCCGGGCCCCTGCCCCCCTG < 41bp 0.471306929800299 0.746994686622156 0.060148835 0.06761956 prediction 0.493989373244312 Functional Gain - ATF5 ENSG00000169136 CDS Human protein_coding chr19:50434198 chr19:50434202 nonsynonymous SNV 0.964 0 25 hm5C_associated_SNPs_109130 0 0 1 0 1 ATF5 chr19:50434285 5'GT 50434285 Upstream 84bp
chr7 6628279 6628279 1 + T C COAD 6628277 + 6628257 6628297 41 CTGACTTTTCCACGGATTGTCTTCATGCTGGGCTTTGTCGT CTGACTTTTCCACGGATTGTCTCCATGCTGGGCTTTGTCGT < 41bp 0.590264693921955 0.837257363572309 0.22362995 0.9736222 prediction 0.493985339300709 Functional Gain - ZDHHC4 ENSG00000136247 CDS Human protein_coding chr7:6628277 chr7:6628279 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_109131 0 0 1 0 1 ZDHHC4 chr7:6628248 3'AG 6628248 Downstream 32bp
chr19 45157173 45157173 1 + C T SKCM 45157172 + 45157152 45157192 41 GTATCCATTTCCTGCAGACCCCCCAGAGGTATCCATCTCTG GTATCCATTTCCTGCAGACCCTCCAGAGGTATCCATCTCTG < 41bp 0.552775869388007 0.799752165943913 0.013556719 0.955017 prediction 0.493952593111812 Functional Gain - PVR ENSG00000073008 CDS Human protein_coding chr19:45157172 chr19:45157173 synonymous SNV . 0 22 hm5C_associated_SNPs_109138 0 0 1 0 1 PVR chr19:45157169 3'AG 45157169 Downstream 5bp
chr12 121434487 121434487 1 + T A HNSC 121434483 + 121434463 121434503 41 TGGGGTCATGACCATCGGGCCTGGTGAGCCTGCCTCCCTGG TGGGGTCATGACCATCGGGCCTGGAGAGCCTGCCTCCCTGG < 41bp 0.619116180077539 0.866089496940224 0.1812008 0.20436618 prediction 0.493946633725372 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121434483 chr12:121434487 synonymous SNV . 0 25 hm5C_associated_SNPs_109139 0 0 0 0 2 HNF1A chr12:121434420 3'AG 121434420 Downstream 68bp
chr12 121434487 121434487 1 + T A HNSC 121434483 + 121434463 121434503 41 TGGGGTCATGACCATCGGGCCTGGTGAGCCTGCCTCCCTGG TGGGGTCATGACCATCGGGCCTGGAGAGCCTGCCTCCCTGG < 41bp 0.619116180077539 0.866089496940224 0.1812008 0.20436618 prediction 0.493946633725372 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121434483 chr12:121434487 synonymous SNV . 0 25 hm5C_associated_SNPs_109139 0 0 0 0 2 HNF1A chr12:121434545 5'GT 121434545 Upstream 59bp
chr1 167095087 167095087 1 + T C UCEC 167095085 + 167095065 167095105 41 GCAGTGCTGGTGGTCGCCTACCTGATGATCTTCCACAACAT GCAGTGCTGGTGGTCGCCTACCCGATGATCTTCCACAACAT < 41bp 0.479668644625724 0.746957951798789 0.29579145 0.25497425 prediction 0.493915903597578 Functional Gain - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167095085 chr1:167095087 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_109145 0 0 0 0 1 DUSP27 chr1:167095024 3'AG 167095024 Downstream 64bp
chrX 49029495 49029495 1 + T C LUAD 49029493 + 49029473 49029513 41 CAGATATTATGCCTGGTGATCCTGATCTGCTTCAGTGCCTC CAGATATTATGCCTGGTGATCCCGATCTGCTTCAGTGCCTC < 41bp 0.469314230141104 0.746957870768582 0.2629915 0.22834915 prediction 0.493915741537165 Functional Gain - PLP2 ENSG00000102007 CDS Human protein_coding chrX:49029493 chrX:49029495 nonsynonymous SNV 0.993 3 23 hm5C_associated_SNPs_109146 0 0 1 0 1 PLP2 chrX:49029476 3'AG 49029476 Downstream 20bp
chr19 1073169 1073169 1 + C T STAD 1073168 + 1073148 1073188 41 ACCTCCTTGAGGCCCGCCGCCCGCGGGCCCACGAGTGCCTG ACCTCCTTGAGGCCCGCCGCCTGCGGGCCCACGAGTGCCTG < 41bp 0.502367792806856 0.749297419801425 0.1236949 0.17235059 prediction 0.493859253989137 Functional Gain - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1073168 chr19:1073169 nonsynonymous SNV 0.057 3 22 hm5C_associated_SNPs_109151 0 0 1 0 1 ARHGAP45 chr19:1073148 3'AG 1073148 Downstream 22bp
chr1 178433445 178433445 1 + C T SKCM 178433444 + 178433424 178433464 41 TGTGGACTCTGCCACAATGTCCCCAGTAGAGAGGACAGCAG TGTGGACTCTGCCACAATGTCTCCAGTAGAGAGGACAGCAG < 41bp 0.472036395509324 0.746928367987805 0.08436018 0.94027734 prediction 0.493856735975609 Functional Gain - RASAL2 ENSG00000075391 CDS Human protein_coding chr1:178433444 chr1:178433445 synonymous SNV . 0 22 hm5C_associated_SNPs_109153 0 0 1 0 1 RASAL2 chr1:178433413 3'AG 178433413 Downstream 33bp
chr21 42811675 42811675 1 + T G LUSC 42811672 + 42811652 42811692 41 AATCAGTCATGAGCTAATCACCCTGGAGATCAGCTCCCGAG AATCAGTCATGAGCTAATCACCCGGGAGATCAGCTCCCGAG < 41bp 0.339727001100259 0.746908208273831 0.16284916 0.4763996 prediction 0.493816416547662 Functional Gain - MX1 ENSG00000157601 CDS Human protein_coding chr21:42811672 chr21:42811675 nonsynonymous SNV 0.980 5 24 hm5C_associated_SNPs_109157 0 0 0 0 1 MX1 chr21:42811621 3'AG 42811621 Downstream 55bp
chr9 95797634 95797634 1 + C G rs55957138 95797633 + 95797613 95797653 41 GCTGCAGGACGGCCGGCTGCCCCGCACCATCCCTCTCCCCA GCTGCAGGACGGCCGGCTGCCGCGCACCATCCCTCTCCCCA < 41bp 0.438737723162971 0.74690356993902 0.030845284 0.067121506 prediction 0.493807139878039 Functional Gain - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95797633 chr9:95797634 synonymous SNV . 0 22 hm5C_associated_SNPs_109158 0 0 0 0 1 FGD3 chr9:95797620 3'AG 95797620 Downstream 15bp
chr19 55286700 55286700 1 + C A rs199868260 55286699 + 55286679 55286719 41 GTGACCTTGTCCTGCAGCTCCCGGAGCTCCTATGACATGTA GTGACCTTGTCCTGCAGCTCCAGGAGCTCCTATGACATGTA < 41bp 0.493835622785278 0.746903086588938 0.8806162 0.8708658 prediction 0.493806173177877 Functional Gain - KIR2DL1 ENSG00000125498 CDS Human protein_coding chr19:55286699 chr19:55286700 synonymous SNV . 0 22 hm5C_associated_SNPs_109159 0 0 0 0 1 KIR2DL1 chr19:55286617 3'AG 55286617 Downstream 84bp
chr1 906302 906302 1 + C A rs41300090 906301 + 906281 906321 41 GGTGCTCTGCCCCAGCCGGGCCGAGCTGGACCGCTGGCTTT GGTGCTCTGCCCCAGCCGGGCAGAGCTGGACCGCTGGCTTT < 41bp 0.514623635066742 0.761524823827235 0.3413156 0.6741893 prediction 0.493802377520985 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:906301 chr1:906302 synonymous SNV . 0 22 hm5C_associated_SNPs_109161 0 0 0 0 2 PLEKHN1 chr1:906259 3'AG 906259 Downstream 44bp
chr1 906302 906302 1 + C A rs41300090 906301 + 906281 906321 41 GGTGCTCTGCCCCAGCCGGGCCGAGCTGGACCGCTGGCTTT GGTGCTCTGCCCCAGCCGGGCAGAGCTGGACCGCTGGCTTT < 41bp 0.514623635066742 0.761524823827235 0.3413156 0.6741893 prediction 0.493802377520985 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:906301 chr1:906302 synonymous SNV . 0 22 hm5C_associated_SNPs_109161 0 0 0 0 2 PLEKHN1 chr1:906386 5'GT 906386 Upstream 85bp
chr1 45973179 45973179 1 + C A UCEC 45973178 + 45973158 45973198 41 ACCTCCGAATGCTGACTGACCCAGTGGACCAGTGTGTGGCC ACCTCCGAATGCTGACTGACCAAGTGGACCAGTGTGTGGCC < 41bp 0.544970769756611 0.791861761864423 0.614031 0.9277014 prediction 0.493781984215625 Functional Gain - MMACHC ENSG00000132763 CDS Human protein_coding chr1:45973178 chr1:45973179 nonsynonymous SNV 0.407 5 22 hm5C_associated_SNPs_109162 0 0 0 0 1 MMACHC chr1:45973222 5'GT 45973222 Upstream 44bp
chr1 100534099 100534099 1 + C T UCEC 100534098 + 100534078 100534118 41 CAGTGTTTCTCTCCTACCTACCGGAGGCAGGCCAATATTCC CAGTGTTTCTCTCCTACCTACTGGAGGCAGGCCAATATTCC < 41bp 0.513858279941966 0.760748176864619 0.7694104 0.49514577 prediction 0.493779793845307 Functional Gain - MFSD14A ENSG00000156875 CDS Human protein_coding chr1:100534098 chr1:100534099 nonsynonymous SNV 0.649 4 22 hm5C_associated_SNPs_109164 0 0 1 0 2 MFSD14A chr1:100534029 3'AG 100534029 Downstream 71bp
chr1 100534099 100534099 1 + C T UCEC 100534098 + 100534078 100534118 41 CAGTGTTTCTCTCCTACCTACCGGAGGCAGGCCAATATTCC CAGTGTTTCTCTCCTACCTACTGGAGGCAGGCCAATATTCC < 41bp 0.513858279941966 0.760748176864619 0.7694104 0.49514577 prediction 0.493779793845307 Functional Gain - MFSD14A ENSG00000156875 CDS Human protein_coding chr1:100534098 chr1:100534099 nonsynonymous SNV 0.649 4 22 hm5C_associated_SNPs_109164 0 0 1 0 2 MFSD14A chr1:100534142 5'GT 100534142 Upstream 44bp
chr9 2047439 2047439 1 + C T UCEC 2047438 + 2047418 2047458 41 GCATCAGCCCCATCCAGAAACCGCAAGGCCTGGACCCCGTG GCATCAGCCCCATCCAGAAACTGCAAGGCCTGGACCCCGTG < 41bp 0.532832572261083 0.779716684236227 0.0795539 0.52106875 prediction 0.493768223950288 Functional Gain - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2047438 chr9:2047439 nonsynonymous SNV 0.978 4 22 hm5C_associated_SNPs_109165 0 0 1 0 1 SMARCA2 chr9:2047484 5'GT 2047484 Upstream 46bp
chr3 113677278 113677278 1 + T C LAML 113677276 + 113677256 113677296 41 GCAGGCATGGCCTACATCTTCCTGATCCAGCTGATCAACAT GCAGGCATGGCCTACATCTTCCCGATCCAGCTGATCAACAT < 41bp 0.562532020328837 0.809411821988845 0.091629356 0.17838803 prediction 0.493759603320016 Functional Gain - ZDHHC23 ENSG00000184307 CDS Human protein_coding chr3:113677276 chr3:113677278 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_109168 0 0 0 0 1 ZDHHC23 chr3:113677210 3'AG 113677210 Downstream 69bp
chr2 207508994 207508994 1 + C G STAD 207508993 + 207508973 207509013 41 GGGAACAGAGGAGGGATCCACCGCCCCTTGAGCTTCACCTG GGGAACAGAGGAGGGATCCACGGCCCCTTGAGCTTCACCTG < 41bp 0.579767708796046 0.826647276153355 0.39504048 0.32453167 prediction 0.493759134714617 Functional Gain - FAM237A ENSG00000235118 ncRNA_exonic Human protein_coding chr2:207508993 chr2:207508994 . . 0 22 hm5C_associated_SNPs_109169 0 0 0 0 1 FAM237A chr2:207508951 3'AG 207508951 Downstream 44bp
chr1 44685933 44685933 1 + C A rs144125108 44685932 + 44685912 44685952 41 ACCCGGACTTGGTCCTGACCCCAAGGACACCATCATTGATG ACCCGGACTTGGTCCTGACCCAAAGGACACCATCATTGATG < 41bp 0.521702063642347 0.7685797644181 0.027302653 0.11213872 prediction 0.493755401551506 Functional Gain - DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44685932 chr1:44685933 synonymous SNV . 0 22 hm5C_associated_SNPs_109170 0 0 1 0 1 DMAP1 chr1:44685981 5'GT 44685981 Upstream 49bp
chr4 77940350 77940350 1 + C T UCEC 77940349 + 77940329 77940369 41 ATTTGCAGTGGTTGGCAGCACCGAAGAGGTGAAGATTGGCA ATTTGCAGTGGTTGGCAGCACTGAAGAGGTGAAGATTGGCA < 41bp 0.521392274064009 0.768268561672835 0.10253981 0.10164741 prediction 0.493752575217651 Functional Gain - SEPT11 ENSG00000138758 CDS Human protein_coding chr4:77940349 chr4:77940350 synonymous SNV . 0 22 hm5C_associated_SNPs_109171 0 0 1 0 1 SEPT11 chr4:77940318 3'AG 77940318 Downstream 33bp
chr11 10517277 10517277 1 + T A UCEC 10517273 + 10517253 10517293 41 GCTGGATCATCCAGGTGCCCCGGATTTAGTAAGTGAGGTGG GCTGGATCATCCAGGTGCCCCGGAATTAGTAAGTGAGGTGG < 41bp 0.42650904367649 0.746825819256785 0.35894632 0.5108052 prediction 0.493651638513571 Functional Gain - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10517273 chr11:10517277 nonsynonymous SNV 0.986 5 25 hm5C_associated_SNPs_109179 0 0 1 0 1 AMPD3 chr11:10517280 5'GT 10517280 Upstream 4bp
chr17 72338033 72338033 1 + C T SKCM 72338032 + 72338012 72338052 41 CAGATGGTGGTTCTCATGGACCCAATGGAGGATCCCGACGA CAGATGGTGGTTCTCATGGACTCAATGGAGGATCCCGACGA < 41bp 0.492097875369519 0.746813333895617 0.030082136 0.1260378 prediction 0.493626667791233 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72338032 chr17:72338033 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_109181 0 0 0 0 2 KIF19 chr17:72338015 3'AG 72338015 Downstream 19bp
chr17 72338033 72338033 1 + C T SKCM 72338032 + 72338012 72338052 41 CAGATGGTGGTTCTCATGGACCCAATGGAGGATCCCGACGA CAGATGGTGGTTCTCATGGACTCAATGGAGGATCCCGACGA < 41bp 0.492097875369519 0.746813333895617 0.030082136 0.1260378 prediction 0.493626667791233 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72338032 chr17:72338033 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_109181 0 0 0 0 2 KIF19 chr17:72338125 5'GT 72338125 Upstream 93bp
chr19 39691112 39691112 1 + C A ESCA 39691108 + 39691088 39691128 41 AACTTCTGGGAGAGGACCCCCTGGCCGCTGGGTCCAGGTGA AACTTCTGGGAGAGGACCCCCTGGACGCTGGGTCCAGGTGA < 41bp 0.67627176386165 0.923077279449625 0.14102387 0.37331375 prediction 0.49361103117595 Functional Gain - NCCRP1 ENSG00000188505 CDS Human protein_coding chr19:39691108 chr19:39691112 synonymous SNV . 0 25 hm5C_associated_SNPs_109183 0 0 0 0 1 NCCRP1 chr19:39691124 5'GT 39691124 Upstream 13bp
chr5 110560256 110560256 1 + C G BLCA 110560255 + 110560235 110560275 41 CGCCAGTGCGGCCCCGGGGACCGCGAGCCTCGTCCCGGATT CGCCAGTGCGGCCCCGGGGACGGCGAGCCTCGTCCCGGATT < 41bp 0.601709562971866 0.848512635161601 0.35183817 0.6160406 prediction 0.49360614437947 Functional Gain - CAMK4 ENSG00000152495 CDS Human protein_coding chr5:110560255 chr5:110560256 synonymous SNV . 0 22 hm5C_associated_SNPs_109184 0 0 0 0 1 CAMK4 chr5:110560342 5'GT 110560342 Upstream 87bp
chr7 35913364 35913364 1 + T C PRAD 35913362 + 35913342 35913382 41 AGGGTGCAGTGTTGTTTATACTTCATTGCTCCTTCAGGACA AGGGTGCAGTGTTGTTTATACTCCATTGCTCCTTCAGGACA < 41bp 0.607475858722064 0.854258867637936 0.097519934 0.9487374 prediction 0.493566017831745 Functional Gain - SEPT7 ENSG00000122545 CDS Human protein_coding chr7:35913362 chr7:35913364 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_109192 0 0 1 0 1 SEPT7 chr7:35913385 5'GT 35913385 Upstream 22bp
chr1 52252285 52252285 1 + C T UCEC 52252284 + 52252264 52252304 41 GATCAGAACGAGTATGAATCCCGCAGGTAAGCCGACATTGT GATCAGAACGAGTATGAATCCTGCAGGTAAGCCGACATTGT < 41bp 0.503526141838894 0.750300649057108 0.7134501 0.3652377 prediction 0.493549014436429 Functional Gain - OSBPL9 ENSG00000117859 CDS Human protein_coding chr1:52252284 chr1:52252285 nonsynonymous SNV 0.700 4 22 hm5C_associated_SNPs_109196 0 0 1 0 2 OSBPL9 chr1:52252198 3'AG 52252198 Downstream 88bp
chr1 52252285 52252285 1 + C T UCEC 52252284 + 52252264 52252304 41 GATCAGAACGAGTATGAATCCCGCAGGTAAGCCGACATTGT GATCAGAACGAGTATGAATCCTGCAGGTAAGCCGACATTGT < 41bp 0.503526141838894 0.750300649057108 0.7134501 0.3652377 prediction 0.493549014436429 Functional Gain - OSBPL9 ENSG00000117859 CDS Human protein_coding chr1:52252284 chr1:52252285 nonsynonymous SNV 0.700 4 22 hm5C_associated_SNPs_109196 0 0 1 0 2 OSBPL9 chr1:52252289 5'GT 52252289 Upstream 5bp
chr2 71357884 71357884 1 + C A rs80028181 71357880 + 71357860 71357900 41 CGGGTCGGCCCGAGTGCTTCCTCACGTAAGTGCGCAGATCC CGGGTCGGCCCGAGTGCTTCCTCAAGTAAGTGCGCAGATCC < 41bp 0.672241198459257 0.91901131621427 0.06421992 0.58677876 prediction 0.493540235510025 Functional Gain - MPHOSPH10 ENSG00000124383 CDS Human protein_coding chr2:71357880 chr2:71357884 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_109197 0 0 1 0 1 MPHOSPH10 chr2:71357884 5'GT 71357884 Upstream 1bp
chr17 78395694 78395694 1 + C A rs35171431 78395693 + 78395673 78395713 41 GTGTCGGGCTTCCTGGCCTTCCGAGAGGTGCCCTTCTTGCT GTGTCGGGCTTCCTGGCCTTCAGAGAGGTGCCCTTCTTGCT < 41bp 0.50629639466078 0.753052706577245 0.6489936 0.86777496 prediction 0.49351262383293 Functional Gain - ENDOV ENSG00000173818 CDS Human protein_coding chr17:78395693 chr17:78395694 synonymous SNV . 0 22 hm5C_associated_SNPs_109199 0 0 0 0 1 ENDOV chr17:78395628 3'AG 78395628 Downstream 67bp
chr19 45975905 45975905 1 + C G LGG 45975904 + 45975884 45975924 41 CTGGAGTTTGTGCTGGTGGCCCACAAACCGGGCTGCAAGAT CTGGAGTTTGTGCTGGTGGCCGACAAACCGGGCTGCAAGAT < 41bp 0.436803523714038 0.746711482082759 0.04039204 0.28285226 prediction 0.493422964165517 Functional Gain - FOSB ENSG00000125740 CDS Human protein_coding chr19:45975904 chr19:45975905 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_109205 0 0 0 0 2 FOSB chr19:45975809 3'AG 45975809 Downstream 97bp
chr19 45975905 45975905 1 + C G LGG 45975904 + 45975884 45975924 41 CTGGAGTTTGTGCTGGTGGCCCACAAACCGGGCTGCAAGAT CTGGAGTTTGTGCTGGTGGCCGACAAACCGGGCTGCAAGAT < 41bp 0.436803523714038 0.746711482082759 0.04039204 0.28285226 prediction 0.493422964165517 Functional Gain - FOSB ENSG00000125740 CDS Human protein_coding chr19:45975904 chr19:45975905 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_109205 0 0 0 0 2 FOSB chr19:45975964 5'GT 45975964 Upstream 60bp
chr1 16359708 16359708 1 + T C LUAD 16359706 + 16359686 16359726 41 TTGAACCTTCAGTCCCTCTTCGTGACATCGCGGGGCAGAGC TTGAACCTTCAGTCCCTCTTCGCGACATCGCGGGGCAGAGC < 41bp 0.556886115093511 0.803595914777459 0.33482718 0.41319072 prediction 0.493419599367896 Functional Gain - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16359706 chr1:16359708 nonsynonymous SNV 0.159 5 23 hm5C_associated_SNPs_109206 0 0 0 0 2 CLCNKA chr1:16359665 3'AG 16359665 Downstream 44bp
chr1 16359708 16359708 1 + T C LUAD 16359706 + 16359686 16359726 41 TTGAACCTTCAGTCCCTCTTCGTGACATCGCGGGGCAGAGC TTGAACCTTCAGTCCCTCTTCGCGACATCGCGGGGCAGAGC < 41bp 0.556886115093511 0.803595914777459 0.33482718 0.41319072 prediction 0.493419599367896 Functional Gain - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16359706 chr1:16359708 nonsynonymous SNV 0.159 5 23 hm5C_associated_SNPs_109206 0 0 0 0 2 CLCNKA chr1:16359751 5'GT 16359751 Upstream 44bp
chr7 99818084 99818084 1 + C A rs188001537 99818083 + 99818063 99818103 41 AGCCTCCCGCCCAGCTCAGACCCAGGTGGGGCCGGGGCGAG AGCCTCCCGCCCAGCTCAGACACAGGTGGGGCCGGGGCGAG < 41bp 0.522208674121372 0.76891396960515 0.39928934 0.40724462 prediction 0.493410590967557 Functional Gain - PVRIG ENSG00000213413 CDS Human protein_coding chr7:99818083 chr7:99818084 nonsynonymous SNV 0.080 0 22 hm5C_associated_SNPs_109207 0 0 0 0 1 PVRIG chr7:99818087 5'GT 99818087 Upstream 4bp
chr12 10339131 10339131 1 + T G SARC 10339129 + 10339109 10339149 41 GGAAGATGGGGGCCCACCACCCTGTGAAGTGACCGTCATTG GGAAGATGGGGGCCCACCACCCGGTGAAGTGACCGTCATTG < 41bp 0.385602748285666 0.746686621745556 0.22676322 0.84255594 prediction 0.493373243491112 Functional Gain - TMEM52B ENSG00000165685 CDS Human protein_coding chr12:10339129 chr12:10339131 nonsynonymous SNV 0.107 0 23 hm5C_associated_SNPs_109210 0 0 0 0 1 TMEM52B chr12:10339188 5'GT 10339188 Upstream 58bp
chr6 10702868 10702868 1 + T G COAD 10702866 + 10702846 10702886 41 GTCGGTTGGTACAGATAAAACTTTAAGGTAAGTCATTAATG GTCGGTTGGTACAGATAAAACTGTAAGGTAAGTCATTAATG < 41bp 0.434735181869429 0.746684900867623 0.2884903 0.3083885 prediction 0.493369801735246 Functional Gain - PAK1IP1 ENSG00000111845 CDS Human protein_coding chr6:10702866 chr6:10702868 nonsynonymous SNV 0.981 2 23 hm5C_associated_SNPs_109211 0 0 1 0 2 PAK1IP1 chr6:10702798 3'AG 10702798 Downstream 71bp
chr6 10702868 10702868 1 + T G COAD 10702866 + 10702846 10702886 41 GTCGGTTGGTACAGATAAAACTTTAAGGTAAGTCATTAATG GTCGGTTGGTACAGATAAAACTGTAAGGTAAGTCATTAATG < 41bp 0.434735181869429 0.746684900867623 0.2884903 0.3083885 prediction 0.493369801735246 Functional Gain - PAK1IP1 ENSG00000111845 CDS Human protein_coding chr6:10702866 chr6:10702868 nonsynonymous SNV 0.981 2 23 hm5C_associated_SNPs_109211 0 0 1 0 2 PAK1IP1 chr6:10702872 5'GT 10702872 Upstream 5bp
chrX 129155065 129155065 1 + C T STAD 129155064 + 129155044 129155084 41 GTCAGGGGAAAGCACAAGCACCGGAAGCCGACAAAGCCGGA GTCAGGGGAAAGCACAAGCACTGGAAGCCGACAAAGCCGGA < 41bp 0.512619266678325 0.759300738332734 0.07853371 0.114706635 prediction 0.493362943308819 Functional Gain - BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129155064 chrX:129155065 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_109212 0 0 0 0 1 BCORL1 chrX:129155125 5'GT 129155125 Upstream 61bp
chr12 119943017 119943017 1 + C A STAD 119943016 + 119942996 119943036 41 GAACCCTGGCTCGGATGAGCCCCCAAGTGTGAACACCCAGG GAACCCTGGCTCGGATGAGCCACCAAGTGTGAACACCCAGG < 41bp 0.507858601031314 0.754528809650835 0.19409025 0.26677293 prediction 0.493340417239042 Functional Gain - CCDC60 ENSG00000183273 CDS Human protein_coding chr12:119943016 chr12:119943017 synonymous SNV . 0 22 hm5C_associated_SNPs_109213 0 0 0 0 1 CCDC60 chr12:119943108 5'GT 119943108 Upstream 92bp
chr11 32457296 32457296 1 + C A rs529637299 32457292 + 32457272 32457312 41 CACCCTCCTCTTCAACCCAACACGCGCTCTCAGCTGGCCGG CACCCTCCTCTTCAACCCAACACGAGCTCTCAGCTGGCCGG < 41bp 0.396269504835204 0.746663809714561 0.03827852 0.073094845 prediction 0.493327619429121 Functional Gain - WT1-AS ENSG00000183242 ncRNA_exonic Human antisense chr11:32457292 chr11:32457296 . . 0 25 hm5C_associated_SNPs_109216 0 0 0 0 1 WT1-AS chr11:32457392 5'GT 32457392 Upstream 97bp
chr10 104161038 104161038 1 + C T ESCA 104161037 + 104161017 104161057 41 GAAGGGCCTGAGAAGGACACCCGAAGCAGCTTCCGGGGCCA GAAGGGCCTGAGAAGGACACCTGAAGCAGCTTCCGGGGCCA < 41bp 0.505176337140535 0.751834344778726 0.3995602 0.45237613 prediction 0.493316015276382 Functional Gain - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104161037 chr10:104161038 stopgain 0.104 0 22 hm5C_associated_SNPs_109221 0 0 1 0 1 NFKB2 chr10:104161088 5'GT 104161088 Upstream 51bp
chrX 49104124 49104124 1 + T A UCEC 49104120 + 49104100 49104140 41 GGCCTCCCAGGTCACGTGGGCAGCTCAGGAACAGGAGCTCG GGCCTCCCAGGTCACGTGGGCAGCACAGGAACAGGAGCTCG < 41bp 0.420833388751335 0.746657499107825 0.74179816 0.7674008 prediction 0.493314998215651 Functional Gain - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49104120 chrX:49104124 synonymous SNV . 0 25 hm5C_associated_SNPs_109222 0 0 1 0 1 CCDC22 chrX:49104110 3'AG 49104110 Downstream 15bp
chr9 133491892 133491892 1 + C A UCEC 133491888 + 133491868 133491908 41 CATCGGCAGAGGAGGGGAAACAATCAAGCAGTTGCAGGTGT CATCGGCAGAGGAGGGGAAACAATAAAGCAGTTGCAGGTGT < 41bp 0.326094070766847 0.746649879363521 0.8699603 0.8990884 prediction 0.493299758727043 Functional Gain - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133491888 chr9:133491892 synonymous SNV . 0 25 hm5C_associated_SNPs_109223 0 0 1 0 1 FUBP3 chr9:133491904 5'GT 133491904 Upstream 13bp
chr7 31013716 31013716 1 + A G UCEC 31013713 + 31013693 31013733 41 CTGGCCTCCACCTCCCCCAGCTCAAGGAGAGCCTTCTGGTG CTGGCCTCCACCTCCCCCAGCTCGAGGAGAGCCTTCTGGTG < 41bp 0.515699515251999 0.762348458570103 0.15638289 0.19232872 prediction 0.493297886636208 Functional Gain - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31013713 chr7:31013716 synonymous SNV 0.026 0 24 hm5C_associated_SNPs_109224 0 0 0 0 1 GHRHR chr7:31013753 5'GT 31013753 Upstream 38bp
chr5 149006649 149006649 1 + C T HNSC 149006648 + 149006628 149006668 41 TCCTCTCCCAGCCGCTCCTTCCAGGGTCTGAACGCCAGGTG TCCTCTCCCAGCCGCTCCTTCTAGGGTCTGAACGCCAGGTG < 41bp 0.50230675553249 0.748939417880281 0.92999095 0.8645858 prediction 0.49326532469558 Functional Gain - ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:149006648 chr5:149006649 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_109226 0 0 0 0 1 ARHGEF37 chr5:149006639 3'AG 149006639 Downstream 11bp
chr2 166179959 166179959 1 + C A SKCM 166179958 + 166179938 166179978 41 GGACTGCAATGGTGTGGTCTCCCTGGTCGGGGGCCCTTCTA GGACTGCAATGGTGTGGTCTCACTGGTCGGGGGCCCTTCTA < 41bp 0.517072521550472 0.763697167128196 0.19798732 0.40845266 prediction 0.493249291155449 Functional Gain - SCN2A ENSG00000136531 CDS Human protein_coding chr2:166179958 chr2:166179959 synonymous SNV . 0 22 hm5C_associated_SNPs_109227 0 0 0 0 1 SCN2A chr2:166180010 5'GT 166180010 Upstream 52bp
chr1 17599897 17599897 1 + C T rs11584781 17599896 + 17599876 17599916 41 CCTCCCGGTGGTCTTTGACTCCCCAAGGAATGGGGAACTGC CCTCCCGGTGGTCTTTGACTCTCCAAGGAATGGGGAACTGC < 41bp 0.471296564531425 0.746607496283127 0.20745814 0.9557506 prediction 0.493214992566254 Functional Gain - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17599896 chr1:17599897 synonymous SNV . 0 22 hm5C_associated_SNPs_109231 0 0 0 0 2 PADI3 chr1:17599835 3'AG 17599835 Downstream 63bp
chr1 17599897 17599897 1 + C T rs11584781 17599896 + 17599876 17599916 41 CCTCCCGGTGGTCTTTGACTCCCCAAGGAATGGGGAACTGC CCTCCCGGTGGTCTTTGACTCTCCAAGGAATGGGGAACTGC < 41bp 0.471296564531425 0.746607496283127 0.20745814 0.9557506 prediction 0.493214992566254 Functional Gain - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17599896 chr1:17599897 synonymous SNV . 0 22 hm5C_associated_SNPs_109231 0 0 0 0 2 PADI3 chr1:17599942 5'GT 17599942 Upstream 46bp
chr19 731176 731176 1 + A G rs76698799 731173 + 731153 731193 41 GAGAACGCGGCGGCCCCGAGCCCAGTCCGGGCCCCAGCCCC GAGAACGCGGCGGCCCCGAGCCCGGTCCGGGCCCCAGCCCC < 41bp 0.491462934296699 0.746583257610015 0.26287562 0.38427094 prediction 0.493166515220029 Functional Gain - PALM ENSG00000099864 CDS Human protein_coding chr19:731173 chr19:731176 synonymous SNV . 0 24 hm5C_associated_SNPs_109238 0 0 1 0 2 PALM chr19:731095 3'AG 731095 Downstream 82bp
chr19 731176 731176 1 + A G rs76698799 731173 + 731153 731193 41 GAGAACGCGGCGGCCCCGAGCCCAGTCCGGGCCCCAGCCCC GAGAACGCGGCGGCCCCGAGCCCGGTCCGGGCCCCAGCCCC < 41bp 0.491462934296699 0.746583257610015 0.26287562 0.38427094 prediction 0.493166515220029 Functional Gain - PALM ENSG00000099864 CDS Human protein_coding chr19:731173 chr19:731176 synonymous SNV . 0 24 hm5C_associated_SNPs_109238 0 0 1 0 2 PALM chr19:731245 5'GT 731245 Upstream 70bp
chr2 27276399 27276399 1 + C T CESC 27276398 + 27276378 27276418 41 CTTTGTGCGCACACTGCCCACCCGGCCACGCTGGGAACGCA CTTTGTGCGCACACTGCCCACTCGGCCACGCTGGGAACGCA < 41bp 0.527385399820556 0.773968611552702 0.01551497 0.015753835 prediction 0.493166423464291 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27276398 chr2:27276399 synonymous SNV . 0 22 hm5C_associated_SNPs_109239 0 0 1 0 1 AGBL5 chr2:27276441 5'GT 27276441 Upstream 43bp
chr19 15752358 15752358 1 + T A LUAD 15752354 + 15752334 15752374 41 TGGACCTATACCTTCTATGACAACTGCTGCCGCCTCCGGTG TGGACCTATACCTTCTATGACAACAGCTGCCGCCTCCGGTG < 41bp 0.439242746716829 0.746582523525638 0.06135544 0.053849936 prediction 0.493165047051277 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15752354 chr19:15752358 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_109240 0 0 1 0 1 CYP4F3 chr19:15752423 5'GT 15752423 Upstream 66bp
chr17 35298160 35298160 1 + C A HNSC 35298159 + 35298139 35298179 41 CGAGCAGCTGGCGCAGGAGACCGGCCTCAACATGCGCGTCA CGAGCAGCTGGCGCAGGAGACAGGCCTCAACATGCGCGTCA < 41bp 0.535136475954537 0.781712594657476 0.47166544 0.79948294 prediction 0.493152237405877 Functional Gain - LHX1 ENSG00000132130 CDS Human other chr17:35298159 chr17:35298160 synonymous SNV . 0 22 hm5C_associated_SNPs_109241 0 0 0 0 1 LHX1 chr17:35298184 5'GT 35298184 Upstream 25bp
chr16 77859314 77859314 1 + C G LUSC 77859313 + 77859293 77859333 41 CTGTTTGAAGTTGCCAACCTCCGGGAAGGGATGTCTGTGCT CTGTTTGAAGTTGCCAACCTCGGGGAAGGGATGTCTGTGCT < 41bp 0.620489372797563 0.867061325769837 0.45338365 0.9105053 prediction 0.493143905944548 Functional Gain - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77859313 chr16:77859314 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_109242 0 0 0 0 1 VAT1L chr16:77859358 5'GT 77859358 Upstream 45bp
chr9 130473770 130473770 1 + C A LUSC 130473769 + 130473749 130473789 41 GCCAGGCACAAAAGAGGCCACCAGAAGGTGTGCCTGCAGGC GCCAGGCACAAAAGAGGCCACAAGAAGGTGTGCCTGCAGGC < 41bp 0.482150331622407 0.746563723293089 0.38184568 0.30649072 prediction 0.493127446586179 Functional Gain - CFAP157 ENSG00000160401 CDS Human protein_coding chr9:130473769 chr9:130473770 nonsynonymous SNV 0.036 0 22 hm5C_associated_SNPs_109245 0 0 0 0 1 CFAP157 chr9:130473775 5'GT 130473775 Upstream 6bp
chr21 44192566 44192566 1 + C A BLCA 44192562 + 44192542 44192582 41 GTTCCAGTTACAGAAGAAGACTGACAGCTTGACGTCTGGGG GTTCCAGTTACAGAAGAAGACTGAAAGCTTGACGTCTGGGG < 41bp 0.385625163164813 0.746559420563859 0.04575017 0.10315806 prediction 0.493118841127717 Functional Gain - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44192562 chr21:44192566 nonsynonymous SNV 0.011 0 25 hm5C_associated_SNPs_109246 0 0 1 0 2 PDE9A chr21:44192549 3'AG 44192549 Downstream 18bp
chr21 44192566 44192566 1 + C A BLCA 44192562 + 44192542 44192582 41 GTTCCAGTTACAGAAGAAGACTGACAGCTTGACGTCTGGGG GTTCCAGTTACAGAAGAAGACTGAAAGCTTGACGTCTGGGG < 41bp 0.385625163164813 0.746559420563859 0.04575017 0.10315806 prediction 0.493118841127717 Functional Gain - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44192562 chr21:44192566 nonsynonymous SNV 0.011 0 25 hm5C_associated_SNPs_109246 0 0 1 0 2 PDE9A chr21:44192630 5'GT 44192630 Upstream 65bp
chr5 147513418 147513418 1 + C T COAD 147513417 + 147513397 147513437 41 AAGTGTGAGGAGAGCAGCACCCCAGGAACCACCGCAGCCAG AAGTGTGAGGAGAGCAGCACCTCAGGAACCACCGCAGCCAG < 41bp 0.514736543724697 0.761293968509388 0.06791496 0.06704682 prediction 0.493114849569381 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147513417 chr5:147513418 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_109248 0 0 0 0 2 SPINK5 chr5:147513360 3'AG 147513360 Downstream 59bp
chr5 147513418 147513418 1 + C T COAD 147513417 + 147513397 147513437 41 AAGTGTGAGGAGAGCAGCACCCCAGGAACCACCGCAGCCAG AAGTGTGAGGAGAGCAGCACCTCAGGAACCACCGCAGCCAG < 41bp 0.514736543724697 0.761293968509388 0.06791496 0.06704682 prediction 0.493114849569381 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147513417 chr5:147513418 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_109248 0 0 0 0 2 SPINK5 chr5:147513450 5'GT 147513450 Upstream 33bp
chr20 48553029 48553029 1 + T C UCEC 48553027 + 48553007 48553047 41 GAGGCTGACCCCCTAGGACGCTTCACGTGTCCCGTGTGCTT GAGGCTGACCCCCTAGGACGCTCCACGTGTCCCGTGTGCTT < 41bp 0.531946501365692 0.77849999050789 0.49987817 0.8983111 prediction 0.493106978284396 Functional Gain - RNF114 ENSG00000124226 CDS Human protein_coding chr20:48553027 chr20:48553029 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_109250 0 0 1 0 1 RNF114 chr20:48553089 5'GT 48553089 Upstream 61bp
chr12 15131002 15131002 1 + C G LUSC 15131001 + 15130981 15131021 41 CAAACCAGGGTCCTACCACCCCACGCAAAGGCCCTCCCAAG CAAACCAGGGTCCTACCACCCGACGCAAAGGCCCTCCCAAG < 41bp 0.607378500467207 0.853930389850004 0.05082202 0.17396015 prediction 0.493103778765593 Functional Gain - PDE6H ENSG00000139053 CDS Human protein_coding chr12:15131001 chr12:15131002 nonsynonymous SNV 0.961 4 22 hm5C_associated_SNPs_109251 0 0 0 0 1 PDE6H chr12:15130906 3'AG 15130906 Downstream 97bp
chr3 113003262 113003262 1 + C T rs3814404 113003261 + 113003241 113003281 41 ATGGTGCCATTGGGAGGACTCCCAGGCCACCAGGCCAGTGG ATGGTGCCATTGGGAGGACTCTCAGGCCACCAGGCCAGTGG < 41bp 0.526601998407578 0.773151463076348 0.4182291 0.37917608 prediction 0.49309892933754 Functional Gain - BOC ENSG00000144857 CDS Human protein_coding chr3:113003261 chr3:113003262 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_109252 0 0 0 0 1 BOC chr3:113003182 3'AG 113003182 Downstream 81bp
chr6 348220 348220 1 + C G LGG 348219 + 348199 348239 41 TGGGAGATCCTGTGCCAACCCCAACGTGGGCTTCCAGAGAC TGGGAGATCCTGTGCCAACCCGAACGTGGGCTTCCAGAGAC < 41bp 0.428947777676658 0.746549114355663 0.15807581 0.20806342 prediction 0.493098228711326 Functional Gain - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348219 chr6:348220 nonsynonymous SNV 0.999 0 22 hm5C_associated_SNPs_109253 0 0 1 0 1 DUSP22 chr6:348274 5'GT 348274 Upstream 55bp
chr1 156100489 156100489 1 + C T rs80356805 156100488 + 156100468 156100508 41 TCTGCTGAACTCCAAGGAGGCCGCACTGAGCACTGCTCTCA TCTGCTGAACTCCAAGGAGGCTGCACTGAGCACTGCTCTCA < 41bp 0.509421188672269 0.755955421436761 0.1837554 0.24213412 prediction 0.493068465528983 Functional Gain - LMNA ENSG00000160789 CDS Human protein_coding chr1:156100488 chr1:156100489 synonymous SNV . 0 22 hm5C_associated_SNPs_109256 2 0 1 0 2 LMNA chr1:156100408 3'AG 156100408 Downstream 82bp
chr1 156100489 156100489 1 + C T rs80356805 156100488 + 156100468 156100508 41 TCTGCTGAACTCCAAGGAGGCCGCACTGAGCACTGCTCTCA TCTGCTGAACTCCAAGGAGGCTGCACTGAGCACTGCTCTCA < 41bp 0.509421188672269 0.755955421436761 0.1837554 0.24213412 prediction 0.493068465528983 Functional Gain - LMNA ENSG00000160789 CDS Human protein_coding chr1:156100488 chr1:156100489 synonymous SNV . 0 22 hm5C_associated_SNPs_109256 2 0 1 0 2 LMNA chr1:156100564 5'GT 156100564 Upstream 76bp
chr9 120470943 120470943 1 + C T HNSC 120470942 + 120470922 120470962 41 CTGGACCTGAGCTTTAATCCCCTGAGGCATTTAGGCAGCTA CTGGACCTGAGCTTTAATCCCTTGAGGCATTTAGGCAGCTA < 41bp 0.502240607167591 0.748768600525491 0.3586111 0.20476133 prediction 0.493055986715799 Functional Gain - TLR4 ENSG00000136869 CDS Human protein_coding chr9:120470942 chr9:120470943 synonymous SNV . 0 22 hm5C_associated_SNPs_109259 0 0 0 0 1 TLR4 chr9:120471007 5'GT 120471007 Upstream 65bp
chr21 45499524 45499524 1 + C T SKCM 45499523 + 45499503 45499543 41 CTGGCTGAGGGCTGGGCACTCCCCATCACACACACAAGGAA CTGGCTGAGGGCTGGGCACTCTCCATCACACACACAAGGAA < 41bp 0.578127116332446 0.82465426706195 0.14782476 0.95397866 prediction 0.493054301459008 Functional Gain - TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45499523 chr21:45499524 nonsynonymous SNV 0.800 1 22 hm5C_associated_SNPs_109260 0 0 1 0 2 TRAPPC10 chr21:45499445 3'AG 45499445 Downstream 80bp
chr21 45499524 45499524 1 + C T SKCM 45499523 + 45499503 45499543 41 CTGGCTGAGGGCTGGGCACTCCCCATCACACACACAAGGAA CTGGCTGAGGGCTGGGCACTCTCCATCACACACACAAGGAA < 41bp 0.578127116332446 0.82465426706195 0.14782476 0.95397866 prediction 0.493054301459008 Functional Gain - TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45499523 chr21:45499524 nonsynonymous SNV 0.800 1 22 hm5C_associated_SNPs_109260 0 0 1 0 2 TRAPPC10 chr21:45499585 5'GT 45499585 Upstream 62bp
chr17 7577561 7577561 1 - A C COAD 7577564 - 7577544 7577584 41 CACTACAACTACATGTGTAACAGTTCCTGCATGGGCGGCAT CACTACAACTACATGTGTAACAGGTCCTGCATGGGCGGCAT < 41bp 0.381542631510776 0.746525796678278 0.24011141 0.42974272 prediction 0.493051593356556 Functional Gain - TP53 ENSG00000141510 CDS Human protein_coding chr17:7577564 chr17:7577561 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_109261 0 0 1 0 1 TP53 chr17:7577608 3'AG 7577608 Downstream 48bp
chr3 32409437 32409437 1 + C T SKCM 32409436 + 32409416 32409456 41 TAGATGCATCTTCCGTCTCCCCTGAGAGGGACAGTCACAAC TAGATGCATCTTCCGTCTCCCTTGAGAGGGACAGTCACAAC < 41bp 0.527070063973107 0.773594800967907 0.0094617605 0.0065401495 prediction 0.493049473989599 Functional Gain - CMTM8 ENSG00000170293 CDS Human protein_coding chr3:32409436 chr3:32409437 nonsynonymous SNV 0.331 0 22 hm5C_associated_SNPs_109262 0 0 1 0 2 CMTM8 chr3:32409364 3'AG 32409364 Downstream 74bp
chr3 32409437 32409437 1 + C T SKCM 32409436 + 32409416 32409456 41 TAGATGCATCTTCCGTCTCCCCTGAGAGGGACAGTCACAAC TAGATGCATCTTCCGTCTCCCTTGAGAGGGACAGTCACAAC < 41bp 0.527070063973107 0.773594800967907 0.0094617605 0.0065401495 prediction 0.493049473989599 Functional Gain - CMTM8 ENSG00000170293 CDS Human protein_coding chr3:32409436 chr3:32409437 nonsynonymous SNV 0.331 0 22 hm5C_associated_SNPs_109262 0 0 1 0 2 CMTM8 chr3:32409480 5'GT 32409480 Upstream 44bp
chr11 125280755 125280755 1 + C A LIHC 125280754 + 125280734 125280774 41 GCAATCCCCCAGGGAGCCATCCAGATCCAGAACACACAGGT GCAATCCCCCAGGGAGCCATCAAGATCCAGAACACACAGGT < 41bp 0.486911981885834 0.74652380218023 0.21892568 0.2256974 prediction 0.493047604360461 Functional Gain - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125280754 chr11:125280755 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_109263 0 0 0 0 2 PKNOX2 chr11:125280675 3'AG 125280675 Downstream 81bp
chr11 125280755 125280755 1 + C A LIHC 125280754 + 125280734 125280774 41 GCAATCCCCCAGGGAGCCATCCAGATCCAGAACACACAGGT GCAATCCCCCAGGGAGCCATCAAGATCCAGAACACACAGGT < 41bp 0.486911981885834 0.74652380218023 0.21892568 0.2256974 prediction 0.493047604360461 Functional Gain - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125280754 chr11:125280755 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_109263 0 0 0 0 2 PKNOX2 chr11:125280772 5'GT 125280772 Upstream 18bp
chr10 85961614 85961614 1 + C T HNSC 85961613 + 85961593 85961633 41 CACAGCGGTGTGCTGCGCCTCCAGGCTGGGGCCACTCTGGA CACAGCGGTGTGCTGCGCCTCTAGGCTGGGGCCACTCTGGA < 41bp 0.510007537646369 0.756528974375214 0.9374872 0.60564744 prediction 0.493042873457691 Functional Gain - CDHR1 ENSG00000148600 CDS Human protein_coding chr10:85961613 chr10:85961614 stopgain 0.731 0 22 hm5C_associated_SNPs_109264 0 0 0 0 1 CDHR1 chr10:85961676 5'GT 85961676 Upstream 63bp
chr10 1038588 1038588 1 + C T SKCM 1038587 + 1038567 1038607 41 TCACAAATTCTAACAGATTTCCCCAAATTGGATGTAAGTGA TCACAAATTCTAACAGATTTCTCCAAATTGGATGTAAGTGA < 41bp 0.498220242801378 0.746518985428378 0.10387632 0.94310385 prediction 0.493037970856755 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1038587 chr10:1038588 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_109266 0 0 1 1 1 GTPBP4 chr10:1038599 5'GT 1038599 Upstream 12bp
chr19 49507641 49507641 1 + C G BLCA 49507637 + 49507617 49507657 41 CGGTCGGGCAGTCCTTATTGCTGGCCAGCCGGGCACGGGGA CGGTCGGGCAGTCCTTATTGCTGGGCAGCCGGGCACGGGGA < 41bp 0.592231575351482 0.838740396821423 0.26307923 0.32005912 prediction 0.493017642939883 Functional Gain - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49507637 chr19:49507641 synonymous SNV . 0 25 hm5C_associated_SNPs_109267 0 0 1 0 1 RUVBL2 chr19:49507675 5'GT 49507675 Upstream 35bp
chr8 91049142 91049142 1 + C A KIRC 91049138 + 91049118 91049158 41 TTTTGTAGTACCAAGTGCTTCTGCCAAAGCAGGTGTGGAAG TTTTGTAGTACCAAGTGCTTCTGCAAAAGCAGGTGTGGAAG < 41bp 0.312813540235514 0.74650175375111 0.3585623 0.76421374 prediction 0.493003507502219 Functional Gain - DECR1 ENSG00000104325 CDS Human protein_coding chr8:91049138 chr8:91049142 synonymous SNV . 0 25 hm5C_associated_SNPs_109270 0 0 1 0 2 DECR1 chr8:91049069 3'AG 91049069 Downstream 74bp
chr8 91049142 91049142 1 + C A KIRC 91049138 + 91049118 91049158 41 TTTTGTAGTACCAAGTGCTTCTGCCAAAGCAGGTGTGGAAG TTTTGTAGTACCAAGTGCTTCTGCAAAAGCAGGTGTGGAAG < 41bp 0.312813540235514 0.74650175375111 0.3585623 0.76421374 prediction 0.493003507502219 Functional Gain - DECR1 ENSG00000104325 CDS Human protein_coding chr8:91049138 chr8:91049142 synonymous SNV . 0 25 hm5C_associated_SNPs_109270 0 0 1 0 2 DECR1 chr8:91049168 5'GT 91049168 Upstream 27bp
chr20 61588214 61588214 1 + C A COAD 61588213 + 61588193 61588233 41 ATCTGCACCGTCTCCATGAGCCAGGACTTCGGCTGGAACAA ATCTGCACCGTCTCCATGAGCAAGGACTTCGGCTGGAACAA < 41bp 0.531300298744673 0.777793094106061 0.5213682 0.7460558 prediction 0.492985590722775 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61588213 chr20:61588214 nonsynonymous SNV 0.984 1 22 hm5C_associated_SNPs_109272 0 0 1 0 1 SLC17A9 chr20:61588117 3'AG 61588117 Downstream 98bp
chr3 134873066 134873066 1 + C A BLCA 134873065 + 134873045 134873085 41 TCACCTTGTCATGGCCACAGCCGGAGCAGCCCAATGGCATC TCACCTTGTCATGGCCACAGCAGGAGCAGCCCAATGGCATC < 41bp 0.501380540119637 0.747865969994623 0.8937372 0.878807 prediction 0.492970859749971 Functional Gain - EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134873065 chr3:134873066 nonsynonymous SNV 0.956 2 22 hm5C_associated_SNPs_109273 0 0 0 0 2 EPHB1 chr3:134872994 3'AG 134872994 Downstream 73bp
chr3 134873066 134873066 1 + C A BLCA 134873065 + 134873045 134873085 41 TCACCTTGTCATGGCCACAGCCGGAGCAGCCCAATGGCATC TCACCTTGTCATGGCCACAGCAGGAGCAGCCCAATGGCATC < 41bp 0.501380540119637 0.747865969994623 0.8937372 0.878807 prediction 0.492970859749971 Functional Gain - EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134873065 chr3:134873066 nonsynonymous SNV 0.956 2 22 hm5C_associated_SNPs_109273 0 0 0 0 2 EPHB1 chr3:134873118 5'GT 134873118 Upstream 53bp
chr2 29247039 29247039 1 + C A LUAD 29247035 + 29247015 29247055 41 TGCGGTCCAAGGTGTCTCACCTGGCCATCAGCACCTTGGGA TGCGGTCCAAGGTGTCTCACCTGGACATCAGCACCTTGGGA < 41bp 0.327115653139417 0.74648401318307 0.74714947 0.44604433 prediction 0.49296802636614 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29247035 chr2:29247039 nonsynonymous SNV 0.987 4 25 hm5C_associated_SNPs_109274 0 0 0 0 1 TOGARAM2 chr2:29247005 3'AG 29247005 Downstream 35bp
chr21 43693455 43693455 1 + C G rs61735843 43693454 + 43693434 43693474 41 CGTCCTCATCAACGGCCTGCCCCGGGACCTGCGCTGCTTCC CGTCCTCATCAACGGCCTGCCGCGGGACCTGCGCTGCTTCC < 41bp 0.623076871659343 0.869555047124001 0.0885289 0.38283256 prediction 0.492956350929317 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43693454 chr21:43693455 synonymous SNV . 0 22 hm5C_associated_SNPs_109276 0 0 0 0 2 ABCG1 chr21:43693413 3'AG 43693413 Downstream 43bp
chr21 43693455 43693455 1 + C G rs61735843 43693454 + 43693434 43693474 41 CGTCCTCATCAACGGCCTGCCCCGGGACCTGCGCTGCTTCC CGTCCTCATCAACGGCCTGCCGCGGGACCTGCGCTGCTTCC < 41bp 0.623076871659343 0.869555047124001 0.0885289 0.38283256 prediction 0.492956350929317 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43693454 chr21:43693455 synonymous SNV . 0 22 hm5C_associated_SNPs_109276 0 0 0 0 2 ABCG1 chr21:43693545 5'GT 43693545 Upstream 91bp
chr17 79073793 79073793 1 + C G rs146015006 79073792 + 79073772 79073812 41 CGTGTCCGACGGCTACAAGACCGCACTGACAGAGGAGCGCA CGTGTCCGACGGCTACAAGACGGCACTGACAGAGGAGCGCA < 41bp 0.611349434784218 0.857827049482996 0.035452962 0.06578019 prediction 0.492955229397556 Functional Gain - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79073792 chr17:79073793 synonymous SNV . 0 22 hm5C_associated_SNPs_109277 0 0 1 0 2 BAIAP2 chr17:79073728 3'AG 79073728 Downstream 66bp
chr17 79073793 79073793 1 + C G rs146015006 79073792 + 79073772 79073812 41 CGTGTCCGACGGCTACAAGACCGCACTGACAGAGGAGCGCA CGTGTCCGACGGCTACAAGACGGCACTGACAGAGGAGCGCA < 41bp 0.611349434784218 0.857827049482996 0.035452962 0.06578019 prediction 0.492955229397556 Functional Gain - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79073792 chr17:79073793 synonymous SNV . 0 22 hm5C_associated_SNPs_109277 0 0 1 0 2 BAIAP2 chr17:79073880 5'GT 79073880 Upstream 88bp
chr19 4231299 4231299 1 + T C LUSC 4231297 + 4231277 4231317 41 GCTCCAAACTCCACCAGCCCCGTGTCCTTCATTGCCACGTA GCTCCAAACTCCACCAGCCCCGCGTCCTTCATTGCCACGTA < 41bp 0.523185766171782 0.769657850257162 0.23596784 0.20152962 prediction 0.492944168170761 Functional Gain - EBI3 ENSG00000105246 CDS Human protein_coding chr19:4231297 chr19:4231299 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_109280 0 0 0 0 1 EBI3 chr19:4231320 5'GT 4231320 Upstream 22bp
chr16 69996945 69996945 1 + C T UCEC 69996944 + 69996924 69996964 41 GAACGACCAGCGCTGCAAAACCCGAAACCGTTACATCTGCC GAACGACCAGCGCTGCAAAACTCGAAACCGTTACATCTGCC < 41bp 0.541061032527327 0.787524720346468 0.14945415 0.8624247 prediction 0.49292737563828 Functional Gain - CLEC18A ENSG00000157322 CDS Human protein_coding chr16:69996944 chr16:69996945 synonymous SNV . 0 22 hm5C_associated_SNPs_109282 0 0 0 0 2 CLEC18A chr16:69996879 3'AG 69996879 Downstream 67bp
chr16 69996945 69996945 1 + C T UCEC 69996944 + 69996924 69996964 41 GAACGACCAGCGCTGCAAAACCCGAAACCGTTACATCTGCC GAACGACCAGCGCTGCAAAACTCGAAACCGTTACATCTGCC < 41bp 0.541061032527327 0.787524720346468 0.14945415 0.8624247 prediction 0.49292737563828 Functional Gain - CLEC18A ENSG00000157322 CDS Human protein_coding chr16:69996944 chr16:69996945 synonymous SNV . 0 22 hm5C_associated_SNPs_109282 0 0 0 0 2 CLEC18A chr16:69996970 5'GT 69996970 Upstream 26bp
chr16 21696591 21696591 1 + C A LUSC 21696590 + 21696570 21696610 41 TGGAGCAGCGTCTGCACCAGCCCCAGAAGCTGCTGGAGGAC TGGAGCAGCGTCTGCACCAGCACCAGAAGCTGCTGGAGGAC < 41bp 0.511600792238169 0.758064072630777 0.13876578 0.22537526 prediction 0.492926560785216 Functional Gain - OTOA ENSG00000155719 CDS Human protein_coding chr16:21696590 chr16:21696591 nonsynonymous SNV 0.732 4 22 hm5C_associated_SNPs_109283 0 0 0 0 2 OTOA chr16:21696551 3'AG 21696551 Downstream 41bp
chr16 21696591 21696591 1 + C A LUSC 21696590 + 21696570 21696610 41 TGGAGCAGCGTCTGCACCAGCCCCAGAAGCTGCTGGAGGAC TGGAGCAGCGTCTGCACCAGCACCAGAAGCTGCTGGAGGAC < 41bp 0.511600792238169 0.758064072630777 0.13876578 0.22537526 prediction 0.492926560785216 Functional Gain - OTOA ENSG00000155719 CDS Human protein_coding chr16:21696590 chr16:21696591 nonsynonymous SNV 0.732 4 22 hm5C_associated_SNPs_109283 0 0 0 0 2 OTOA chr16:21696682 5'GT 21696682 Upstream 92bp
chr1 46739114 46739114 1 + A G LIHC 46739111 + 46739091 46739131 41 CTTCCCTCCTGGTTACAGCTCTAAGGCCCTGGAGCCCCAGC CTTCCCTCCTGGTTACAGCTCTAGGGCCCTGGAGCCCCAGC < 41bp 0.498592074005414 0.746462756516775 0.89042723 0.9210031 prediction 0.49292551303355 Functional Gain - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739111 chr1:46739114 nonsynonymous SNV 0.315 1 24 hm5C_associated_SNPs_109284 0 0 1 0 2 RAD54L chr1:46739027 3'AG 46739027 Downstream 88bp
chr1 46739114 46739114 1 + A G LIHC 46739111 + 46739091 46739131 41 CTTCCCTCCTGGTTACAGCTCTAAGGCCCTGGAGCCCCAGC CTTCCCTCCTGGTTACAGCTCTAGGGCCCTGGAGCCCCAGC < 41bp 0.498592074005414 0.746462756516775 0.89042723 0.9210031 prediction 0.49292551303355 Functional Gain - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739111 chr1:46739114 nonsynonymous SNV 0.315 1 24 hm5C_associated_SNPs_109284 0 0 1 0 2 RAD54L chr1:46739137 5'GT 46739137 Upstream 24bp
chr19 40480461 40480461 1 + T C COAD 40480459 + 40480439 40480479 41 CCAGATGTGATGTACGCGGACATCGGAGGCATGGACATCCA CCAGATGTGATGTACGCGGACACCGGAGGCATGGACATCCA < 41bp 0.573621617870346 0.820079863981371 0.7317322 0.46300867 prediction 0.492916492222051 Functional Gain - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40480459 chr19:40480461 nonsynonymous SNV 0.071 5 23 hm5C_associated_SNPs_109285 0 0 1 0 2 PSMC4 chr19:40480431 3'AG 40480431 Downstream 31bp
chr19 40480461 40480461 1 + T C COAD 40480459 + 40480439 40480479 41 CCAGATGTGATGTACGCGGACATCGGAGGCATGGACATCCA CCAGATGTGATGTACGCGGACACCGGAGGCATGGACATCCA < 41bp 0.573621617870346 0.820079863981371 0.7317322 0.46300867 prediction 0.492916492222051 Functional Gain - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40480459 chr19:40480461 nonsynonymous SNV 0.071 5 23 hm5C_associated_SNPs_109285 0 0 1 0 2 PSMC4 chr19:40480540 5'GT 40480540 Upstream 80bp
chr17 12666457 12666457 1 + C T SKCM 12666456 + 12666436 12666476 41 CCCAAAGATACCCAGATCTTCCCGAAGTCCAACTGCTGTCC CCCAAAGATACCCAGATCTTCTCGAAGTCCAACTGCTGTCC < 41bp 0.533789601415074 0.780233197393409 0.14154035 0.4209354 prediction 0.49288719195667 Functional Gain - MYOCD ENSG00000141052 CDS Human protein_coding chr17:12666456 chr17:12666457 synonymous SNV . 0 22 hm5C_associated_SNPs_109290 0 0 0 0 1 MYOCD chr17:12666390 3'AG 12666390 Downstream 68bp
chr7 123264669 123264669 1 + T C UCEC 123264667 + 123264647 123264687 41 TGGTGTCGACTCTGATCAAACATAACACTAGCCTAGACCAG TGGTGTCGACTCTGATCAAACACAACACTAGCCTAGACCAG < 41bp 0.464743481567016 0.746433236655864 0.0822629 0.09407705 prediction 0.492866473311728 Functional Gain - ASB15 ENSG00000146809 CDS Human protein_coding chr7:123264667 chr7:123264669 synonymous SNV . 0 23 hm5C_associated_SNPs_109294 0 0 0 0 1 ASB15 chr7:123264623 3'AG 123264623 Downstream 47bp
chr3 14176347 14176347 1 + C T rs182464375 14176346 + 14176326 14176366 41 CCTCATGTGGACATCATTCGCCGTGGAGACTTTTTCTACCA CCTCATGTGGACATCATTCGCTGTGGAGACTTTTTCTACCA < 41bp 0.504854823273543 0.751285070347408 0.31418818 0.11783844 prediction 0.492860494147729 Functional Gain - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14176346 chr3:14176347 nonsynonymous SNV 0.938 2 22 hm5C_associated_SNPs_109296 1 0 1 0 2 TMEM43 chr3:14176270 3'AG 14176270 Downstream 78bp
chr3 14176347 14176347 1 + C T rs182464375 14176346 + 14176326 14176366 41 CCTCATGTGGACATCATTCGCCGTGGAGACTTTTTCTACCA CCTCATGTGGACATCATTCGCTGTGGAGACTTTTTCTACCA < 41bp 0.504854823273543 0.751285070347408 0.31418818 0.11783844 prediction 0.492860494147729 Functional Gain - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14176346 chr3:14176347 nonsynonymous SNV 0.938 2 22 hm5C_associated_SNPs_109296 1 0 1 0 2 TMEM43 chr3:14176391 5'GT 14176391 Upstream 45bp
chr3 148583284 148583284 1 + C A LUSC 148583283 + 148583263 148583303 41 GAAGGTGTTCCGCGTGAAGCCCCAGGATGAAAAACAAGCAG GAAGGTGTTCCGCGTGAAGCCACAGGATGAAAAACAAGCAG < 41bp 0.523749940768142 0.770180145920629 0.12349188 0.12127128 prediction 0.492860410304973 Functional Gain - CPA3 ENSG00000163751 CDS Human protein_coding chr3:148583283 chr3:148583284 synonymous SNV . 0 22 hm5C_associated_SNPs_109297 0 0 0 0 2 CPA3 chr3:148583260 3'AG 148583260 Downstream 25bp
chr3 148583284 148583284 1 + C A LUSC 148583283 + 148583263 148583303 41 GAAGGTGTTCCGCGTGAAGCCCCAGGATGAAAAACAAGCAG GAAGGTGTTCCGCGTGAAGCCACAGGATGAAAAACAAGCAG < 41bp 0.523749940768142 0.770180145920629 0.12349188 0.12127128 prediction 0.492860410304973 Functional Gain - CPA3 ENSG00000163751 CDS Human protein_coding chr3:148583283 chr3:148583284 synonymous SNV . 0 22 hm5C_associated_SNPs_109297 0 0 0 0 2 CPA3 chr3:148583335 5'GT 148583335 Upstream 52bp
chrX 153008509 153008509 1 + C G SARC 153008508 + 153008488 153008528 41 AAGCAGAGAATCGGCATGGCCCGCATGTTCTACCACAGGTG AAGCAGAGAATCGGCATGGCCGGCATGTTCTACCACAGGTG < 41bp 0.433177701433486 0.746425254163265 0.14560583 0.27786532 prediction 0.49285050832653 Functional Gain - ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153008508 chrX:153008509 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_109298 0 0 1 0 2 ABCD1 chrX:153008441 3'AG 153008441 Downstream 69bp
chrX 153008509 153008509 1 + C G SARC 153008508 + 153008488 153008528 41 AAGCAGAGAATCGGCATGGCCCGCATGTTCTACCACAGGTG AAGCAGAGAATCGGCATGGCCGGCATGTTCTACCACAGGTG < 41bp 0.433177701433486 0.746425254163265 0.14560583 0.27786532 prediction 0.49285050832653 Functional Gain - ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153008508 chrX:153008509 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_109298 0 0 1 0 2 ABCD1 chrX:153008525 5'GT 153008525 Upstream 17bp
chr9 5772727 5772727 1 + C T SKCM 5772726 + 5772706 5772746 41 CAGTAAAGGGCCTCATAAATCCCAGGTCCAGCTTCGGTGAG CAGTAAAGGGCCTCATAAATCTCAGGTCCAGCTTCGGTGAG < 41bp 0.497377809989793 0.746420815706271 0.23040015 0.2562198 prediction 0.492841631412542 Functional Gain - RIC1 ENSG00000107036 CDS Human protein_coding chr9:5772726 chr9:5772727 synonymous SNV . 0 22 hm5C_associated_SNPs_109301 0 0 1 0 1 RIC1 chr9:5772741 5'GT 5772741 Upstream 15bp
chr9 130550648 130550648 1 + C T SKCM 130550647 + 130550627 130550667 41 GGTGACACTCTGGTACCGGCCCCCGGAGCTGTTGCTCGGTG GGTGACACTCTGGTACCGGCCTCCGGAGCTGTTGCTCGGTG < 41bp 0.489830029048432 0.746419821310889 0.12312943 0.23526919 prediction 0.492839642621778 Functional Gain - CDK9 ENSG00000136807 CDS Human protein_coding chr9:130550647 chr9:130550648 synonymous SNV . 0 22 hm5C_associated_SNPs_109303 0 0 1 0 1 CDK9 chr9:130550664 5'GT 130550664 Upstream 17bp
chr15 81436089 81436089 1 + C T LUSC 81436088 + 81436068 81436108 41 GTACCTAACAGATGAGGTCTCCCATGTGAACTGCTGGCAGG GTACCTAACAGATGAGGTCTCTCATGTGAACTGCTGGCAGG < 41bp 0.509238052994566 0.755646405530824 0.080310285 0.17943859 prediction 0.492816705072516 Functional Gain - CFAP161 ENSG00000156206 CDS Human protein_coding chr15:81436088 chr15:81436089 synonymous SNV . 0 22 hm5C_associated_SNPs_109306 0 0 0 0 1 CFAP161 chr15:81436003 3'AG 81436003 Downstream 87bp
chr15 44673018 44673018 1 + C T PCPG 44673017 + 44672997 44673037 41 GCCACAGATTCACACATAAACCACAATGGAAACCCCGGTAC GCCACAGATTCACACATAAACTACAATGGAAACCCCGGTAC < 41bp 0.508330701379439 0.75473507794973 0.034026086 0.31249273 prediction 0.492808753140582 Functional Gain - CASC4 ENSG00000166734 CDS Human protein_coding chr15:44673017 chr15:44673018 nonsynonymous SNV 0.803 2 22 hm5C_associated_SNPs_109308 0 0 1 0 1 CASC4 chr15:44673004 3'AG 44673004 Downstream 15bp
chr9 126129465 126129465 1 + C A UCEC 126129461 + 126129441 126129481 41 GTGCCCCCAGGCTACAGCGGCGAGCTGTGCGAGGTGGACGA GTGCCCCCAGGCTACAGCGGCGAGATGTGCGAGGTGGACGA < 41bp 0.35269166485759 0.746403760441992 0.78692794 0.8900509 prediction 0.492807520883984 Functional Gain - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126129461 chr9:126129465 nonsynonymous SNV 0.191 1 25 hm5C_associated_SNPs_109309 0 0 0 0 1 CRB2 chr9:126129451 3'AG 126129451 Downstream 15bp
chr2 118583856 118583856 1 + T G STAD 118583854 + 118583834 118583874 41 CTCCACCAAAGGAATATATTCATCGTGTGGGTAGAACAGCC CTCCACCAAAGGAATATATTCAGCGTGTGGGTAGAACAGCC < 41bp 0.422291614787661 0.746400898668207 0.120233774 0.40043014 prediction 0.492801797336415 Functional Gain - DDX18 ENSG00000088205 CDS Human protein_coding chr2:118583854 chr2:118583856 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_109310 0 0 1 0 1 DDX18 chr2:118583845 3'AG 118583845 Downstream 12bp
chr16 56717096 56717096 1 + C G rs146637306 56717095 + 56717075 56717115 41 AGTTGGCTCCTGTGCCTGTGCCGGCTCCTGCAAATGCAAAG AGTTGGCTCCTGTGCCTGTGCGGGCTCCTGCAAATGCAAAG < 41bp 0.431924570908645 0.746398030030514 0.104863435 0.22192621 prediction 0.492796060061028 Functional Gain - MT1X ENSG00000187193 CDS Human protein_coding chr16:56717095 chr16:56717096 synonymous SNV . 0 22 hm5C_associated_SNPs_109312 0 0 1 0 1 MT1X chr16:56717077 3'AG 56717077 Downstream 20bp
chr17 46196496 46196496 1 + C T SKCM 46196495 + 46196475 46196515 41 ATGTCAAACTGTGGCTGGGCCCAGGAAGAGAGGCAGAGCTC ATGTCAAACTGTGGCTGGGCCTAGGAAGAGAGGCAGAGCTC < 41bp 0.513095409880137 0.759485194722029 0.31506854 0.3280127 prediction 0.492779569683784 Functional Gain - SNX11 ENSG00000002919 CDS Human protein_coding chr17:46196495 chr17:46196496 stopgain 0.997 1 22 hm5C_associated_SNPs_109316 0 0 0 0 1 SNX11 chr17:46196548 5'GT 46196548 Upstream 53bp
chr11 10503704 10503704 1 + C T SKCM 10503703 + 10503683 10503723 41 GGCTCGCCTACCACCGCTTCCCGCGGATCACATCCCAGTAC GGCTCGCCTACCACCGCTTCCTGCGGATCACATCCCAGTAC < 41bp 0.513676288314811 0.760058851427435 0.42924684 0.06433079 prediction 0.492765126225248 Functional Gain - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10503703 chr11:10503704 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_109318 0 0 0 0 2 AMPD3 chr11:10503610 3'AG 10503610 Downstream 95bp
chr11 10503704 10503704 1 + C T SKCM 10503703 + 10503683 10503723 41 GGCTCGCCTACCACCGCTTCCCGCGGATCACATCCCAGTAC GGCTCGCCTACCACCGCTTCCTGCGGATCACATCCCAGTAC < 41bp 0.513676288314811 0.760058851427435 0.42924684 0.06433079 prediction 0.492765126225248 Functional Gain - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10503703 chr11:10503704 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_109318 0 0 0 0 2 AMPD3 chr11:10503772 5'GT 10503772 Upstream 69bp
chr14 56757087 56757087 1 + C T SKCM 56757086 + 56757066 56757106 41 AGGGGGCTTCACCGAGGAGTCCCAGCCCGGGGTCTGGCGCG AGGGGGCTTCACCGAGGAGTCTCAGCCCGGGGTCTGGCGCG < 41bp 0.504883790670833 0.751266167529168 0.11228827 0.3266629 prediction 0.49276475371667 Functional Gain - PELI2 ENSG00000139946 CDS Human protein_coding chr14:56757086 chr14:56757087 synonymous SNV . 0 22 hm5C_associated_SNPs_109320 0 0 0 0 1 PELI2 chr14:56757174 5'GT 56757174 Upstream 88bp
chr1 243652396 243652396 1 + T A LUAD 243652392 + 243652372 243652412 41 TCAGCAAGCAGAACCAGCTTCTCCTGGAGAGGCAGAGCCTG TCAGCAAGCAGAACCAGCTTCTCCAGGAGAGGCAGAGCCTG < 41bp 0.650193768658728 0.896561008305185 0.21374431 0.9396522 prediction 0.492734479292914 Functional Gain - SDCCAG8 ENSG00000054282 CDS Human protein_coding chr1:243652392 chr1:243652396 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_109323 0 0 1 0 2 SDCCAG8 chr1:243652316 3'AG 243652316 Downstream 81bp
chr1 243652396 243652396 1 + T A LUAD 243652392 + 243652372 243652412 41 TCAGCAAGCAGAACCAGCTTCTCCTGGAGAGGCAGAGCCTG TCAGCAAGCAGAACCAGCTTCTCCAGGAGAGGCAGAGCCTG < 41bp 0.650193768658728 0.896561008305185 0.21374431 0.9396522 prediction 0.492734479292914 Functional Gain - SDCCAG8 ENSG00000054282 CDS Human protein_coding chr1:243652392 chr1:243652396 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_109323 0 0 1 0 2 SDCCAG8 chr1:243652442 5'GT 243652442 Upstream 47bp
chr4 187086525 187086525 1 + C T LUAD 187086524 + 187086504 187086544 41 TGGCGTGGACCACATGGCTTCCCCACTGGTTCAAACGTCAC TGGCGTGGACCACATGGCTTCTCCACTGGTTCAAACGTCAC < 41bp 0.467453718354569 0.746352773821926 0.0514251 0.92473865 prediction 0.492705547643851 Functional Gain - FAM149A ENSG00000109794 CDS Human protein_coding chr4:187086524 chr4:187086525 synonymous SNV 0.000 0 22 hm5C_associated_SNPs_109327 0 0 0 0 2 FAM149A chr4:187086498 3'AG 187086498 Downstream 28bp
chr4 187086525 187086525 1 + C T LUAD 187086524 + 187086504 187086544 41 TGGCGTGGACCACATGGCTTCCCCACTGGTTCAAACGTCAC TGGCGTGGACCACATGGCTTCTCCACTGGTTCAAACGTCAC < 41bp 0.467453718354569 0.746352773821926 0.0514251 0.92473865 prediction 0.492705547643851 Functional Gain - FAM149A ENSG00000109794 CDS Human protein_coding chr4:187086524 chr4:187086525 synonymous SNV 0.000 0 22 hm5C_associated_SNPs_109327 0 0 0 0 2 FAM149A chr4:187086618 5'GT 187086618 Upstream 94bp
chr1 121115958 121115958 1 + T A rs2289361 121115954 + 121115934 121115974 41 AAGCAGGAGGACCGGCAGACCCCATGCTCCCCTGACTCCAC AAGCAGGAGGACCGGCAGACCCCAAGCTCCCCTGACTCCAC < 41bp 0.438232896342403 0.746328602779255 0.7950704 0.586681 prediction 0.49265720555851 Functional Gain - SRGAP2B;SRGAP2C ENSG00000171943 ncRNA_exonic Human protein_coding chr1:121115954 chr1:121115958 . 0.992 0 25 hm5C_associated_SNPs_109332 0 0 1 0 1 SRGAP2B;SRGAP2C chr1:121116047 5'GT 121116047 Upstream 90bp
chr9 119106955 119106955 1 + C T SKCM 119106954 + 119106934 119106974 41 TGCCGGACAGGCTACGTGCTCCAGATACGGCGGGATGATGA TGCCGGACAGGCTACGTGCTCTAGATACGGCGGGATGATGA < 41bp 0.494774355867237 0.746324316096665 0.74357474 0.670177 prediction 0.49264863219333 Functional Gain - PAPPA ENSG00000182752 CDS Human protein_coding chr9:119106954 chr9:119106955 stopgain 0.978 1 22 hm5C_associated_SNPs_109335 0 0 0 0 1 PAPPA chr9:119106990 5'GT 119106990 Upstream 36bp
chr5 36166718 36166718 1 + C T LUAD 36166717 + 36166697 36166737 41 TCTCAAGGGGTGATTGCCTTCCGCTGCCCACGATCATTTAT TCTCAAGGGGTGATTGCCTTCTGCTGCCCACGATCATTTAT < 41bp 0.507910384490139 0.754230510045331 0.3772996 0.06458229 prediction 0.492640251110384 Functional Gain - SKP2 ENSG00000145604 CDS Human protein_coding chr5:36166717 chr5:36166718 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_109337 0 0 1 0 2 SKP2 chr5:36166621 3'AG 36166621 Downstream 98bp
chr5 36166718 36166718 1 + C T LUAD 36166717 + 36166697 36166737 41 TCTCAAGGGGTGATTGCCTTCCGCTGCCCACGATCATTTAT TCTCAAGGGGTGATTGCCTTCTGCTGCCCACGATCATTTAT < 41bp 0.507910384490139 0.754230510045331 0.3772996 0.06458229 prediction 0.492640251110384 Functional Gain - SKP2 ENSG00000145604 CDS Human protein_coding chr5:36166717 chr5:36166718 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_109337 0 0 1 0 2 SKP2 chr5:36166764 5'GT 36166764 Upstream 47bp
chr9 116045700 116045700 1 + C A SKCM 116045699 + 116045679 116045719 41 CGCTTGGAAGAGGCCCGACTCCATAAGGAGATTCCTGAGAC CGCTTGGAAGAGGCCCGACTCAATAAGGAGATTCCTGAGAC < 41bp 0.527723261452206 0.774031897032687 0.13798007 0.14396387 prediction 0.492617271160963 Functional Gain - PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116045699 chr9:116045700 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_109340 0 0 1 0 2 PRPF4 chr9:116045669 3'AG 116045669 Downstream 32bp
chr9 116045700 116045700 1 + C A SKCM 116045699 + 116045679 116045719 41 CGCTTGGAAGAGGCCCGACTCCATAAGGAGATTCCTGAGAC CGCTTGGAAGAGGCCCGACTCAATAAGGAGATTCCTGAGAC < 41bp 0.527723261452206 0.774031897032687 0.13798007 0.14396387 prediction 0.492617271160963 Functional Gain - PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116045699 chr9:116045700 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_109340 0 0 1 0 2 PRPF4 chr9:116045762 5'GT 116045762 Upstream 63bp
chr2 66739354 66739354 1 + T C HNSC 66739352 + 66739332 66739372 41 ACCCTGATAAGGACAAAAAGCGTCACAAAAAGCGTGGCATC ACCCTGATAAGGACAAAAAGCGCCACAAAAAGCGTGGCATC < 41bp 0.459587591459739 0.746295004393688 0.16906804 0.17723781 prediction 0.492590008787376 Functional Gain - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66739352 chr2:66739354 synonymous SNV . 0 23 hm5C_associated_SNPs_109344 0 0 0 0 2 MEIS1 chr2:66739281 3'AG 66739281 Downstream 74bp
chr2 66739354 66739354 1 + T C HNSC 66739352 + 66739332 66739372 41 ACCCTGATAAGGACAAAAAGCGTCACAAAAAGCGTGGCATC ACCCTGATAAGGACAAAAAGCGCCACAAAAAGCGTGGCATC < 41bp 0.459587591459739 0.746295004393688 0.16906804 0.17723781 prediction 0.492590008787376 Functional Gain - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66739352 chr2:66739354 synonymous SNV . 0 23 hm5C_associated_SNPs_109344 0 0 0 0 2 MEIS1 chr2:66739426 5'GT 66739426 Upstream 73bp
chr19 48284382 48284382 1 + C A COAD 48284381 + 48284361 48284401 41 TCAGTGCGGCGAGGGAACTCCCCAGGCCACCGGGTTCTTTG TCAGTGCGGCGAGGGAACTCCACAGGCCACCGGGTTCTTTG < 41bp 0.54825855322844 0.794551735345792 0.5493474 0.76126444 prediction 0.492586364234704 Functional Gain - SELENOW ENSG00000178980 CDS Human protein_coding chr19:48284381 chr19:48284382 synonymous SNV . 0 22 hm5C_associated_SNPs_109346 0 0 1 0 2 SELENOW chr19:48284365 3'AG 48284365 Downstream 18bp
chr19 48284382 48284382 1 + C A COAD 48284381 + 48284361 48284401 41 TCAGTGCGGCGAGGGAACTCCCCAGGCCACCGGGTTCTTTG TCAGTGCGGCGAGGGAACTCCACAGGCCACCGGGTTCTTTG < 41bp 0.54825855322844 0.794551735345792 0.5493474 0.76126444 prediction 0.492586364234704 Functional Gain - SELENOW ENSG00000178980 CDS Human protein_coding chr19:48284381 chr19:48284382 synonymous SNV . 0 22 hm5C_associated_SNPs_109346 0 0 1 0 2 SELENOW chr19:48284439 5'GT 48284439 Upstream 58bp
chr16 57785933 57785933 1 + A G UCEC 57785930 + 57785910 57785950 41 TCAACGTGGTCGAGTTTCACCCCAACGAGTACCTCCTGGCC TCAACGTGGTCGAGTTTCACCCCGACGAGTACCTCCTGGCC < 41bp 0.50269424827485 0.74897188266865 0.21934342 0.20658368 prediction 0.492555268787599 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57785930 chr16:57785933 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_109350 0 0 1 0 2 KATNB1 chr16:57785852 3'AG 57785852 Downstream 82bp
chr16 57785933 57785933 1 + A G UCEC 57785930 + 57785910 57785950 41 TCAACGTGGTCGAGTTTCACCCCAACGAGTACCTCCTGGCC TCAACGTGGTCGAGTTTCACCCCGACGAGTACCTCCTGGCC < 41bp 0.50269424827485 0.74897188266865 0.21934342 0.20658368 prediction 0.492555268787599 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57785930 chr16:57785933 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_109350 0 0 1 0 2 KATNB1 chr16:57785967 5'GT 57785967 Upstream 35bp
chr15 65218294 65218294 1 + C A rs199876114 65218290 + 65218270 65218310 41 CCTGACCTTACTGCACTGCGCAGCCCAAAAAGGCCATGTGC CCTGACCTTACTGCACTGCGCAGCACAAAAAGGCCATGTGC < 41bp 0.339566823523471 0.746268008469671 0.17507395 0.12519416 prediction 0.492536016939342 Functional Gain - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65218290 chr15:65218294 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_109352 0 0 0 0 2 ANKDD1A chr15:65218265 3'AG 65218265 Downstream 30bp
chr15 65218294 65218294 1 + C A rs199876114 65218290 + 65218270 65218310 41 CCTGACCTTACTGCACTGCGCAGCCCAAAAAGGCCATGTGC CCTGACCTTACTGCACTGCGCAGCACAAAAAGGCCATGTGC < 41bp 0.339566823523471 0.746268008469671 0.17507395 0.12519416 prediction 0.492536016939342 Functional Gain - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65218290 chr15:65218294 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_109352 0 0 0 0 2 ANKDD1A chr15:65218369 5'GT 65218369 Upstream 76bp
chr9 129958847 129958847 1 + C T UCEC 129958846 + 129958826 129958866 41 GACGACAGTGTCCTAGAGTCCCGCAGCCCCCGAAGGGGCCT GACGACAGTGTCCTAGAGTCCTGCAGCCCCCGAAGGGGCCT < 41bp 0.493148693311716 0.746260852370407 0.17582518 0.2001943 prediction 0.492521704740813 Functional Gain - RALGPS1 ENSG00000136828 CDS Human protein_coding chr9:129958846 chr9:129958847 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_109353 0 0 0 0 2 RALGPS1 chr9:129958753 3'AG 129958753 Downstream 95bp
chr9 129958847 129958847 1 + C T UCEC 129958846 + 129958826 129958866 41 GACGACAGTGTCCTAGAGTCCCGCAGCCCCCGAAGGGGCCT GACGACAGTGTCCTAGAGTCCTGCAGCCCCCGAAGGGGCCT < 41bp 0.493148693311716 0.746260852370407 0.17582518 0.2001943 prediction 0.492521704740813 Functional Gain - RALGPS1 ENSG00000136828 CDS Human protein_coding chr9:129958846 chr9:129958847 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_109353 0 0 0 0 2 RALGPS1 chr9:129958910 5'GT 129958910 Upstream 64bp
chr19 50158053 50158053 1 + C T SKCM 50158052 + 50158032 50158072 41 TGCGGTTCGACCCCCCCCACCCCCACCGGGCTGGCTGCCAC TGCGGTTCGACCCCCCCCACCTCCACCGGGCTGGCTGCCAC < 41bp 0.470336912298042 0.746259791712005 0.119826466 0.9466405 prediction 0.49251958342401 Functional Gain - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50158052 chr19:50158053 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_109354 0 0 1 0 1 SCAF1 chr19:50158127 5'GT 50158127 Upstream 75bp
chr7 36324333 36324333 1 + C G rs111320816 36324332 + 36324312 36324352 41 ATTCCTATGGGACGCGGCTGCCGGCATGGAGCTGAGAGACG ATTCCTATGGGACGCGGCTGCGGGCATGGAGCTGAGAGACG < 41bp 0.430987766401952 0.746252010822419 0.4047464 0.838205 prediction 0.492504021644839 Functional Gain - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36324332 chr7:36324333 synonymous SNV . 0 22 hm5C_associated_SNPs_109357 0 0 1 0 2 EEPD1 chr7:36324295 3'AG 36324295 Downstream 39bp
chr7 36324333 36324333 1 + C G rs111320816 36324332 + 36324312 36324352 41 ATTCCTATGGGACGCGGCTGCCGGCATGGAGCTGAGAGACG ATTCCTATGGGACGCGGCTGCGGGCATGGAGCTGAGAGACG < 41bp 0.430987766401952 0.746252010822419 0.4047464 0.838205 prediction 0.492504021644839 Functional Gain - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36324332 chr7:36324333 synonymous SNV . 0 22 hm5C_associated_SNPs_109357 0 0 1 0 2 EEPD1 chr7:36324429 5'GT 36324429 Upstream 97bp
chr6 109764261 109764261 1 + C T UCEC 109764260 + 109764240 109764280 41 AAGCCATTTCCCTTTGGTGTCCGCATTGACTACGTGCTTTA AAGCCATTTCCCTTTGGTGTCTGCATTGACTACGTGCTTTA < 41bp 0.535675781548237 0.78192674733239 0.044049054 0.16281518 prediction 0.492501931568307 Functional Gain - SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109764260 chr6:109764261 nonsynonymous SNV 0.595 5 22 hm5C_associated_SNPs_109358 0 0 1 0 2 SMPD2 chr6:109764180 3'AG 109764180 Downstream 82bp
chr6 109764261 109764261 1 + C T UCEC 109764260 + 109764240 109764280 41 AAGCCATTTCCCTTTGGTGTCCGCATTGACTACGTGCTTTA AAGCCATTTCCCTTTGGTGTCTGCATTGACTACGTGCTTTA < 41bp 0.535675781548237 0.78192674733239 0.044049054 0.16281518 prediction 0.492501931568307 Functional Gain - SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109764260 chr6:109764261 nonsynonymous SNV 0.595 5 22 hm5C_associated_SNPs_109358 0 0 1 0 2 SMPD2 chr6:109764284 5'GT 109764284 Upstream 24bp
chr2 220044462 220044462 1 + C T COAD 220044461 + 220044441 220044481 41 TCCTCTCTCTCTAGCATCATCCCCAGAGGAGCCACACTCTG TCCTCTCTCTCTAGCATCATCTCCAGAGGAGCCACACTCTG < 41bp 0.55397282177587 0.800217429221421 0.16444975 0.9563322 prediction 0.492489214891102 Functional Gain - RETREG2 ENSG00000144567 CDS Human protein_coding chr2:220044461 chr2:220044462 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_109361 0 0 1 0 2 RETREG2 chr2:220044455 3'AG 220044455 Downstream 8bp
chr2 220044462 220044462 1 + C T COAD 220044461 + 220044441 220044481 41 TCCTCTCTCTCTAGCATCATCCCCAGAGGAGCCACACTCTG TCCTCTCTCTCTAGCATCATCTCCAGAGGAGCCACACTCTG < 41bp 0.55397282177587 0.800217429221421 0.16444975 0.9563322 prediction 0.492489214891102 Functional Gain - RETREG2 ENSG00000144567 CDS Human protein_coding chr2:220044461 chr2:220044462 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_109361 0 0 1 0 2 RETREG2 chr2:220044485 5'GT 220044485 Upstream 24bp
chr12 126135490 126135490 1 + C A LUAD 126135489 + 126135469 126135509 41 TGGTCGGGAGCCGGGAATAACCACGGTGCAGGTACACGCCG TGGTCGGGAGCCGGGAATAACAACGGTGCAGGTACACGCCG < 41bp 0.496733419783852 0.746242024817832 0.8337688 0.89027715 prediction 0.492484049635664 Functional Gain - TMEM132B ENSG00000139364 CDS Human protein_coding chr12:126135489 chr12:126135490 synonymous SNV . 0 22 hm5C_associated_SNPs_109362 0 0 0 0 1 TMEM132B chr12:126135499 5'GT 126135499 Upstream 10bp
chr16 20441053 20441053 1 + C A rs8062344 20441052 + 20441032 20441072 41 CCGGAGGAGAGGCCCTCAACCCTGACGTGAGGGAGAAGTGG CCGGAGGAGAGGCCCTCAACCATGACGTGAGGGAGAAGTGG < 41bp 0.478200767681861 0.746238717372485 0.046162367 0.18158996 prediction 0.49247743474497 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20441052 chr16:20441053 nonsynonymous SNV 0.921 3 22 hm5C_associated_SNPs_109365 0 0 0 0 2 ACSM5 chr16:20441000 3'AG 20441000 Downstream 54bp
chr16 20441053 20441053 1 + C A rs8062344 20441052 + 20441032 20441072 41 CCGGAGGAGAGGCCCTCAACCCTGACGTGAGGGAGAAGTGG CCGGAGGAGAGGCCCTCAACCATGACGTGAGGGAGAAGTGG < 41bp 0.478200767681861 0.746238717372485 0.046162367 0.18158996 prediction 0.49247743474497 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20441052 chr16:20441053 nonsynonymous SNV 0.921 3 22 hm5C_associated_SNPs_109365 0 0 0 0 2 ACSM5 chr16:20441123 5'GT 20441123 Upstream 71bp
chrX 47030517 47030517 1 + C A BLCA 47030513 + 47030493 47030533 41 CCCACCGGCCCGCCAGGCTTCCCCCGAGACGGCGACTATCG CCCACCGGCCCGCCAGGCTTCCCCAGAGACGGCGACTATCG < 41bp 0.326832287256434 0.746231559098776 0.083899945 0.22264186 prediction 0.492463118197553 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030513 chrX:47030517 synonymous SNV . 0 25 hm5C_associated_SNPs_109366 0 0 0 0 2 RBM10 chrX:47030427 3'AG 47030427 Downstream 91bp
chrX 47030517 47030517 1 + C A BLCA 47030513 + 47030493 47030533 41 CCCACCGGCCCGCCAGGCTTCCCCCGAGACGGCGACTATCG CCCACCGGCCCGCCAGGCTTCCCCAGAGACGGCGACTATCG < 41bp 0.326832287256434 0.746231559098776 0.083899945 0.22264186 prediction 0.492463118197553 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030513 chrX:47030517 synonymous SNV . 0 25 hm5C_associated_SNPs_109366 0 0 0 0 2 RBM10 chrX:47030509 3'AG 47030509 Downstream 9bp
chr1 38484964 38484964 1 + C T BLCA 38484963 + 38484943 38484983 41 CAACTCACCTGCAAACAGCCCCGGAGCTAGTCGACAGAGTC CAACTCACCTGCAAACAGCCCTGGAGCTAGTCGACAGAGTC < 41bp 0.494673377170796 0.746211447679227 0.40934962 0.17928809 prediction 0.492422895358454 Functional Gain - UTP11 ENSG00000183520 CDS Human protein_coding chr1:38484963 chr1:38484964 nonsynonymous SNV 0.967 4 22 hm5C_associated_SNPs_109368 0 0 1 0 2 UTP11 chr1:38484925 3'AG 38484925 Downstream 40bp
chr1 38484964 38484964 1 + C T BLCA 38484963 + 38484943 38484983 41 CAACTCACCTGCAAACAGCCCCGGAGCTAGTCGACAGAGTC CAACTCACCTGCAAACAGCCCTGGAGCTAGTCGACAGAGTC < 41bp 0.494673377170796 0.746211447679227 0.40934962 0.17928809 prediction 0.492422895358454 Functional Gain - UTP11 ENSG00000183520 CDS Human protein_coding chr1:38484963 chr1:38484964 nonsynonymous SNV 0.967 4 22 hm5C_associated_SNPs_109368 0 0 1 0 2 UTP11 chr1:38485055 5'GT 38485055 Upstream 92bp
chr8 87393069 87393069 1 + C T SKCM 87393068 + 87393048 87393088 41 AATCCAGTAGTTCTTCTAATCCAAAATGGGATGAACAGCTA AATCCAGTAGTTCTTCTAATCTAAAATGGGATGAACAGCTA < 41bp 0.498955969405579 0.74620361441742 0.09306109 0.050008535 prediction 0.49240722883484 Functional Gain - WWP1 ENSG00000123124 CDS Human protein_coding chr8:87393068 chr8:87393069 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_109369 0 0 1 0 1 WWP1 chr8:87393093 5'GT 87393093 Upstream 25bp
chr11 117153170 117153170 1 + T C UCEC 117153168 + 117153148 117153188 41 ATCAAGACAGCACGTACCACCATGGCAGGCCTGACCATGGA ATCAAGACAGCACGTACCACCACGGCAGGCCTGACCATGGA < 41bp 0.569952617608814 0.81614326858026 0.1425553 0.1568979 prediction 0.492381301942892 Functional Gain - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117153168 chr11:117153170 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_109372 0 0 1 0 2 RNF214 chr11:117153120 3'AG 117153120 Downstream 51bp
chr11 117153170 117153170 1 + T C UCEC 117153168 + 117153148 117153188 41 ATCAAGACAGCACGTACCACCATGGCAGGCCTGACCATGGA ATCAAGACAGCACGTACCACCACGGCAGGCCTGACCATGGA < 41bp 0.569952617608814 0.81614326858026 0.1425553 0.1568979 prediction 0.492381301942892 Functional Gain - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117153168 chr11:117153170 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_109372 0 0 1 0 2 RNF214 chr11:117153252 5'GT 117153252 Upstream 83bp
chr2 234858740 234858740 1 + C T COAD 234858739 + 234858719 234858759 41 AAGCTGGTGCGCTTTTTACCCCGCACGGTGTCCCGGCTGCC AAGCTGGTGCGCTTTTTACCCTGCACGGTGTCCCGGCTGCC < 41bp 0.516964555646091 0.763147960072254 0.27982253 0.3491764 prediction 0.492366808852326 Functional Gain - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234858739 chr2:234858740 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_109373 0 0 0 0 1 TRPM8 chr2:234858790 5'GT 234858790 Upstream 51bp
chr3 142773807 142773807 1 + C T SKCM 142773806 + 142773786 142773826 41 AAGAGGCGACACAGTACATCCCCCAGCCCATCTCGCAGTAG AAGAGGCGACACAGTACATCCTCCAGCCCATCTCGCAGTAG < 41bp 0.526740055825799 0.77291306342852 0.037199557 0.8997886 prediction 0.492346015205442 Functional Gain - U2SURP ENSG00000163714 CDS Human protein_coding chr3:142773806 chr3:142773807 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_109375 0 0 1 0 1 U2SURP chr3:142773785 3'AG 142773785 Downstream 23bp
chr8 27514324 27514324 1 + C A LAML 27514323 + 27514303 27514343 41 CAGAAAAGTGGACTCTCTCTCCGAAGACATCTCCTTGACCC CAGAAAAGTGGACTCTCTCTCAGAAGACATCTCCTTGACCC < 41bp 0.53977263518277 0.785937304273289 0.51681054 0.9024489 prediction 0.49232933818104 Functional Gain - SCARA3 ENSG00000168077 CDS Human protein_coding chr8:27514323 chr8:27514324 synonymous SNV . 0 22 hm5C_associated_SNPs_109378 0 0 1 0 2 SCARA3 chr8:27514299 3'AG 27514299 Downstream 26bp
chr8 27514324 27514324 1 + C A LAML 27514323 + 27514303 27514343 41 CAGAAAAGTGGACTCTCTCTCCGAAGACATCTCCTTGACCC CAGAAAAGTGGACTCTCTCTCAGAAGACATCTCCTTGACCC < 41bp 0.53977263518277 0.785937304273289 0.51681054 0.9024489 prediction 0.49232933818104 Functional Gain - SCARA3 ENSG00000168077 CDS Human protein_coding chr8:27514323 chr8:27514324 synonymous SNV . 0 22 hm5C_associated_SNPs_109378 0 0 1 0 2 SCARA3 chr8:27514397 5'GT 27514397 Upstream 74bp
chr6 7417653 7417653 1 + C A rs149650192 7417649 + 7417629 7417669 41 GAAAAAAAGAAAGGAGAAGACAGCCAAGACGAAAAAAGGCA GAAAAAAAGAAAGGAGAAGACAGCAAAGACGAAAAAAGGCA < 41bp 0.347070700728213 0.746163555339852 0.16186753 0.12070006 prediction 0.492327110679703 Functional Gain - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7417649 chr6:7417653 synonymous SNV . 0 25 hm5C_associated_SNPs_109379 0 0 1 0 1 RIOK1 chr6:7417564 3'AG 7417564 Downstream 90bp
chr10 125426536 125426536 1 + C A LUAD 125426532 + 125426512 125426552 41 AAGGTGGCCCGCTTCCATTGCAAGCGCATCGACGTGATCAC AAGGTGGCCCGCTTCCATTGCAAGAGCATCGACGTGATCAC < 41bp 0.353264520007683 0.746156260228129 0.522721 0.50688064 prediction 0.492312520456258 Functional Gain - GPR26 ENSG00000154478 CDS Human protein_coding chr10:125426532 chr10:125426536 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_109380 0 0 0 0 1 GPR26 chr10:125426591 5'GT 125426591 Upstream 56bp
chrX 48678642 48678642 1 + C T UCEC 48678641 + 48678621 48678661 41 CTGATGGGCCTTGCCAGTGGCCGCATTATCCTTATCCTAGA CTGATGGGCCTTGCCAGTGGCTGCATTATCCTTATCCTAGA < 41bp 0.504137196366764 0.75028516300723 0.029952705 0.08578542 prediction 0.492295933280932 Functional Gain - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48678641 chrX:48678642 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_109384 0 0 1 0 1 HDAC6 chrX:48678662 5'GT 48678662 Upstream 21bp
chrX 135592349 135592349 1 + C G SKCM 135592348 + 135592328 135592368 41 GGTGGCCGTCAAATCACTGCCCAGGCATGGGATGGGACTAC GGTGGCCGTCAAATCACTGCCGAGGCATGGGATGGGACTAC < 41bp 0.428539327248869 0.746138928265962 0.05065036 0.4189584 prediction 0.492277856531924 Functional Gain - HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135592348 chrX:135592349 nonsynonymous SNV 0.987 0 22 hm5C_associated_SNPs_109388 0 0 1 0 1 HTATSF1 chrX:135592378 5'GT 135592378 Upstream 30bp
chr17 3563992 3563992 1 + A G rs112689752 3563989 + 3563969 3564009 41 TTGCAGCCGAAGGCCTTGCCCCAAACTACCAGCGTTTCTGC TTGCAGCCGAAGGCCTTGCCCCAGACTACCAGCGTTTCTGC < 41bp 0.504257098849601 0.750385670360822 0.103777945 0.23248553 prediction 0.492257143022442 Functional Gain - CTNS ENSG00000040531 CDS Human protein_coding chr17:3563989 chr17:3563992 synonymous SNV . 0 24 hm5C_associated_SNPs_109391 0 0 0 0 1 CTNS chr17:3563911 3'AG 3563911 Downstream 82bp
chr16 20788730 20788730 1 + C G LUSC 20788729 + 20788709 20788749 41 CCAGGAACCACTCAGCTGACCCAGAAAGACATTCTCTACAG CCAGGAACCACTCAGCTGACCGAGAAAGACATTCTCTACAG < 41bp 0.599027047153764 0.845143211307573 0.375342 0.49842563 prediction 0.492232328307617 Functional Gain - ACSM3 ENSG00000005187 CDS Human protein_coding chr16:20788729 chr16:20788730 nonsynonymous SNV 0.995 0 22 hm5C_associated_SNPs_109395 0 0 1 0 1 ACSM3 chr16:20788695 3'AG 20788695 Downstream 36bp
chr22 37326786 37326786 1 + C T HNSC 37326785 + 37326765 37326805 41 CCAGGCACCACTGCCAGATTCCCGTGCCCGACCCCGCGACC CCAGGCACCACTGCCAGATTCTCGTGCCCGACCCCGCGACC < 41bp 0.504397072013357 0.750512756394756 0.22756279 0.3878985 prediction 0.492231368762797 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37326785 chr22:37326786 nonsynonymous SNV 0.008 1 22 hm5C_associated_SNPs_109396 0 0 0 0 3 CSF2RB chr22:37326697 3'AG 37326697 Downstream 90bp
chr22 37326786 37326786 1 + C T HNSC 37326785 + 37326765 37326805 41 CCAGGCACCACTGCCAGATTCCCGTGCCCGACCCCGCGACC CCAGGCACCACTGCCAGATTCTCGTGCCCGACCCCGCGACC < 41bp 0.504397072013357 0.750512756394756 0.22756279 0.3878985 prediction 0.492231368762797 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37326785 chr22:37326786 nonsynonymous SNV 0.008 1 22 hm5C_associated_SNPs_109396 0 0 0 0 3 CSF2RB chr22:37326715 3'AG 37326715 Downstream 72bp
chr22 37326786 37326786 1 + C T HNSC 37326785 + 37326765 37326805 41 CCAGGCACCACTGCCAGATTCCCGTGCCCGACCCCGCGACC CCAGGCACCACTGCCAGATTCTCGTGCCCGACCCCGCGACC < 41bp 0.504397072013357 0.750512756394756 0.22756279 0.3878985 prediction 0.492231368762797 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37326785 chr22:37326786 nonsynonymous SNV 0.008 1 22 hm5C_associated_SNPs_109396 0 0 0 0 3 CSF2RB chr22:37326872 5'GT 37326872 Upstream 87bp
chr18 22008854 22008854 1 + C G BLCA 22008853 + 22008833 22008873 41 GTGATGCTGCCGAATGAATACCCAGGTACAGCTCCACCTAT GTGATGCTGCCGAATGAATACGCAGGTACAGCTCCACCTAT < 41bp 0.431373338097733 0.74610925081854 0.06325635 0.09707549 prediction 0.492218501637081 Functional Gain - IMPACT ENSG00000154059 CDS Human protein_coding chr18:22008853 chr18:22008854 nonsynonymous SNV 0.991 5 22 hm5C_associated_SNPs_109397 0 0 1 0 2 IMPACT chr18:22008833 3'AG 22008833 Downstream 22bp
chr18 22008854 22008854 1 + C G BLCA 22008853 + 22008833 22008873 41 GTGATGCTGCCGAATGAATACCCAGGTACAGCTCCACCTAT GTGATGCTGCCGAATGAATACGCAGGTACAGCTCCACCTAT < 41bp 0.431373338097733 0.74610925081854 0.06325635 0.09707549 prediction 0.492218501637081 Functional Gain - IMPACT ENSG00000154059 CDS Human protein_coding chr18:22008853 chr18:22008854 nonsynonymous SNV 0.991 5 22 hm5C_associated_SNPs_109397 0 0 1 0 2 IMPACT chr18:22008885 5'GT 22008885 Upstream 32bp
chr14 58875293 58875293 1 + C A UCEC 58875292 + 58875272 58875312 41 AGGACTGCTTGGAGGATGATCCTGATTGAAAAACATTTCAA AGGACTGCTTGGAGGATGATCATGATTGAAAAACATTTCAA < 41bp 0.513565087330187 0.759663850991118 0.19053769 0.21892282 prediction 0.492197527321862 Functional Gain - TOMM20L ENSG00000196860 CDS Human protein_coding chr14:58875292 chr14:58875293 nonsynonymous SNV 0.746 0 22 hm5C_associated_SNPs_109398 0 0 0 1 1 TOMM20L chr14:58875247 3'AG 58875247 Downstream 47bp
chr14 72190413 72190413 1 + C A LUSC 72190412 + 72190392 72190432 41 CCAGTGGTTTTCACCAGTGCCCGGAGTTCACCTAAAGAAGA CCAGTGGTTTTCACCAGTGCCAGGAGTTCACCTAAAGAAGA < 41bp 0.506934843697137 0.753029103054825 0.5431082 0.8777058 prediction 0.492188518715375 Functional Gain - SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72190412 chr14:72190413 synonymous SNV . 0 22 hm5C_associated_SNPs_109399 0 0 1 0 1 SIPA1L1 chr14:72190364 3'AG 72190364 Downstream 50bp
chr8 48878875 48878875 1 + C T rs142732823 48878874 + 48878854 48878894 41 CGGGTGGAGATGGACCGCGGCCGCATTGCAGAGCCCAGTGT CGGGTGGAGATGGACCGCGGCTGCATTGCAGAGCCCAGTGT < 41bp 0.53852595207275 0.784602990424085 0.3246197 0.39272556 prediction 0.492154076702669 Functional Gain - MCM4 ENSG00000104738 CDS Human protein_coding chr8:48878874 chr8:48878875 nonsynonymous SNV 0.031 4 22 hm5C_associated_SNPs_109402 1 0 1 0 1 MCM4 chr8:48878967 5'GT 48878967 Upstream 93bp
chr6 127901484 127901484 1 + C A STAD 127901483 + 127901463 127901503 41 GTAATGGGGATATCATCAGACCAAGTCAGGCTTTTGCCCCC GTAATGGGGATATCATCAGACAAAGTCAGGCTTTTGCCCCC < 41bp 0.518102640475026 0.764169459593164 0.6940837 0.5187349 prediction 0.492133638236275 Functional Gain - C6orf58 ENSG00000184530 CDS Human protein_coding chr6:127901483 chr6:127901484 nonsynonymous SNV 0.353 0 22 hm5C_associated_SNPs_109403 0 0 0 0 1 C6orf58 chr6:127901410 3'AG 127901410 Downstream 75bp
chr17 33448912 33448912 1 + T C UCEC 33448910 + 33448890 33448930 41 AACTTCTTGGAGGATGATACCATCAACCTACTGTAAGTCAC AACTTCTTGGAGGATGATACCACCAACCTACTGTAAGTCAC < 41bp 0.529709968274386 0.775776598492381 0.11573574 0.13879132 prediction 0.49213326043599 Functional Gain - FNDC8 ENSG00000073598 CDS Human protein_coding chr17:33448910 chr17:33448912 nonsynonymous SNV 0.024 0 23 hm5C_associated_SNPs_109404 0 0 0 0 1 FNDC8 chr17:33448921 5'GT 33448921 Upstream 10bp
chr15 74178447 74178447 1 + T C rs140701676 74178445 + 74178425 74178465 41 AGCTGTGTCATCAACATTGGCGTGGCCAAGAACCTAGACAT AGCTGTGTCATCAACATTGGCGCGGCCAAGAACCTAGACAT < 41bp 0.552643035926597 0.798701386825216 0.41937828 0.38788778 prediction 0.492116701797238 Functional Gain - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74178445 chr15:74178447 nonsynonymous SNV 0.303 3 23 hm5C_associated_SNPs_109407 0 0 0 0 2 TBC1D21 chr15:74178419 3'AG 74178419 Downstream 29bp
chr15 74178447 74178447 1 + T C rs140701676 74178445 + 74178425 74178465 41 AGCTGTGTCATCAACATTGGCGTGGCCAAGAACCTAGACAT AGCTGTGTCATCAACATTGGCGCGGCCAAGAACCTAGACAT < 41bp 0.552643035926597 0.798701386825216 0.41937828 0.38788778 prediction 0.492116701797238 Functional Gain - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74178445 chr15:74178447 nonsynonymous SNV 0.303 3 23 hm5C_associated_SNPs_109407 0 0 0 0 2 TBC1D21 chr15:74178515 5'GT 74178515 Upstream 69bp
chr5 137515402 137515402 1 + C A GBM 137515398 + 137515378 137515418 41 AGGGATCCTTTCTCCGCCAGCGGGCTTGCTGTCCGATGACG AGGGATCCTTTCTCCGCCAGCGGGATTGCTGTCCGATGACG < 41bp 0.675647433396162 0.921695395335716 0.89298797 0.905913 prediction 0.492095923879109 Functional Gain - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137515398 chr5:137515402 synonymous SNV . 0 25 hm5C_associated_SNPs_109412 0 0 1 0 1 KIF20A chr5:137515349 3'AG 137515349 Downstream 54bp
chr10 6186952 6186952 1 + C G rs561120271 6186951 + 6186931 6186971 41 GCCGGCCCCGCGGGGAGCGCCCCCGGCGCGATGCCCTTCAG GCCGGCCCCGCGGGGAGCGCCGCCGGCGCGATGCCCTTCAG < 41bp 0.60073460352738 0.846779787307751 0.5486979 0.71486646 prediction 0.492090367560742 Functional Gain - PFKFB3 ENSG00000170525 UTR5 Human protein_coding chr10:6186951 chr10:6186952 . . 0 22 hm5C_associated_SNPs_109415 0 0 0 0 1 PFKFB3 chr10:6186976 5'GT 6186976 Upstream 25bp
chr5 137424723 137424723 1 + C T SKCM 137424722 + 137424702 137424742 41 AAGGGGAAGGATGCCAGAGCCCTGATGAATCTTCACAACAA AAGGGGAAGGATGCCAGAGCCTTGATGAATCTTCACAACAA < 41bp 0.53412551924087 0.780167381298657 0.059214354 0.09586877 prediction 0.492083724115575 Functional Gain - WNT8A ENSG00000061492 CDS Human protein_coding chr5:137424722 chr5:137424723 synonymous SNV . 0 22 hm5C_associated_SNPs_109416 0 0 0 0 1 WNT8A chr5:137424758 5'GT 137424758 Upstream 36bp
chr10 94452272 94452272 1 + T A LUSC 94452268 + 94452248 94452288 41 TCTCTCCGCCCGAGAGGAAGCGTCTGGCCAAGATGCTGCAG TCTCTCCGCCCGAGAGGAAGCGTCAGGCCAAGATGCTGCAG < 41bp 0.633088981826553 0.87913053200378 0.1684857 0.25895026 prediction 0.492083100354453 Functional Gain - HHEX ENSG00000152804 CDS Human protein_coding chr10:94452268 chr10:94452272 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_109417 0 0 1 0 1 HHEX chr10:94452303 5'GT 94452303 Upstream 32bp
chr14 23019579 23019579 1 + T A LUAD 23019575 + 23019555 23019595 41 TGAAAGTGGCCGGGTTTAATCTGCTCATGACGCTGCGGCTG TGAAAGTGGCCGGGTTTAATCTGCACATGACGCTGCGGCTG < 41bp 0.608077236539106 0.854095246464712 0.33666122 0.4846901 prediction 0.492036019851212 Functional Gain - OR4E1;LINC02332 ENSG00000229164 CDS Human other chr14:23019575 chr14:23019579 unknown . 0 25 hm5C_associated_SNPs_109420 0 0 0 0 1 OR4E1;LINC02332 chr14:23019501 3'AG 23019501 Downstream 79bp
chr2 233244940 233244940 1 + C A LUAD 233244939 + 233244919 233244959 41 GTACATGTTTCGCATGGGAACCCCAGACCCTGAGTACCCAG GTACATGTTTCGCATGGGAACACCAGACCCTGAGTACCCAG < 41bp 0.541014731000319 0.787012731115292 0.03132841 0.06556374 prediction 0.491996000229946 Functional Gain - ALPP ENSG00000163283 CDS Human protein_coding chr2:233244939 chr2:233244940 synonymous SNV . 0 22 hm5C_associated_SNPs_109423 0 0 1 0 2 ALPP chr2:233244896 3'AG 233244896 Downstream 45bp
chr2 233244940 233244940 1 + C A LUAD 233244939 + 233244919 233244959 41 GTACATGTTTCGCATGGGAACCCCAGACCCTGAGTACCCAG GTACATGTTTCGCATGGGAACACCAGACCCTGAGTACCCAG < 41bp 0.541014731000319 0.787012731115292 0.03132841 0.06556374 prediction 0.491996000229946 Functional Gain - ALPP ENSG00000163283 CDS Human protein_coding chr2:233244939 chr2:233244940 synonymous SNV . 0 22 hm5C_associated_SNPs_109423 0 0 1 0 2 ALPP chr2:233245030 5'GT 233245030 Upstream 91bp
chr16 8738518 8738518 1 + T G OV 8738516 + 8738496 8738536 41 CTCGCAGATGGCAAGCTGCGCTTCGTGGTGGAGCCCGTGGA CTCGCAGATGGCAAGCTGCGCTGCGTGGTGGAGCCCGTGGA < 41bp 0.39909647686339 0.745982463382756 0.19635177 0.31237763 prediction 0.491964926765512 Functional Gain - METTL22 ENSG00000067365 CDS Human protein_coding chr16:8738516 chr16:8738518 nonsynonymous SNV 0.587 1 23 hm5C_associated_SNPs_109427 0 0 1 0 1 METTL22 chr16:8738582 5'GT 8738582 Upstream 65bp
chr20 39728804 39728804 1 + C T STAD 39728803 + 39728783 39728823 41 ATAGAGCCTCCTGGACTTTTCCGTGGCCGCGGCAACCACCC ATAGAGCCTCCTGGACTTTTCTGTGGCCGCGGCAACCACCC < 41bp 0.502629264970393 0.748592730099627 0.547262 0.29296988 prediction 0.491926930258468 Functional Gain - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39728803 chr20:39728804 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_109431 0 0 1 0 1 TOP1 chr20:39728883 5'GT 39728883 Upstream 80bp
chr17 32959843 32959843 1 + C T COAD 32959842 + 32959822 32959862 41 CTGGAAATGACAGTCTGGGTCCCCAAGCTGCCCTTGCACAT CTGGAAATGACAGTCTGGGTCTCCAAGCTGCCCTTGCACAT < 41bp 0.476915751404911 0.745953358180947 0.027193576 0.9447758 prediction 0.491906716361894 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32959842 chr17:32959843 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_109434 0 0 0 0 1 TMEM132E chr17:32959928 5'GT 32959928 Upstream 86bp
chr19 57059269 57059269 1 + C A COAD 57059268 + 57059248 57059288 41 AGATGACAAGAGCCTGGTGCCCAGGTGAGTGTGGGAGAACC AGATGACAAGAGCCTGGTGCCAAGGTGAGTGTGGGAGAACC < 41bp 0.494495571315569 0.745948644249331 0.39210445 0.5607636 prediction 0.491897288498662 Functional Gain - ZFP28 ENSG00000196867 CDS Human protein_coding chr19:57059268 chr19:57059269 nonsynonymous SNV 0.712 3 22 hm5C_associated_SNPs_109435 0 0 0 0 2 ZFP28 chr19:57059176 3'AG 57059176 Downstream 94bp
chr19 57059269 57059269 1 + C A COAD 57059268 + 57059248 57059288 41 AGATGACAAGAGCCTGGTGCCCAGGTGAGTGTGGGAGAACC AGATGACAAGAGCCTGGTGCCAAGGTGAGTGTGGGAGAACC < 41bp 0.494495571315569 0.745948644249331 0.39210445 0.5607636 prediction 0.491897288498662 Functional Gain - ZFP28 ENSG00000196867 CDS Human protein_coding chr19:57059268 chr19:57059269 nonsynonymous SNV 0.712 3 22 hm5C_associated_SNPs_109435 0 0 0 0 2 ZFP28 chr19:57059271 5'GT 57059271 Upstream 3bp
chr16 77246847 77246847 1 + T G rs2278048 77246844 + 77246824 77246864 41 TCTAGGCCAGCAGGACCCGCCCGTTCCCGACCTTCCCTCGA TCTAGGCCAGCAGGACCCGCCCGGTCCCGACCTTCCCTCGA < 41bp 0.355392219444097 0.745944626384325 0.09954119 0.36152387 prediction 0.491889252768649 Functional Gain - SYCE1L ENSG00000261063 ncRNA_intronic Human protein_coding chr16:77246844 chr16:77246847 . . 0 24 hm5C_associated_SNPs_109437 0 0 0 0 1 SYCE1L chr16:77246754 3'AG 77246754 Downstream 94bp
chr7 5643160 5643160 1 + T C COAD 5643158 + 5643138 5643178 41 GCTACTTTGACATCGAGTGGCGTGACCGGCGCATCACACTG GCTACTTTGACATCGAGTGGCGCGACCGGCGCATCACACTG < 41bp 0.568696659240557 0.814627857559474 0.46885842 0.35344315 prediction 0.491862396637833 Functional Gain - FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5643158 chr7:5643160 synonymous SNV . 0 23 hm5C_associated_SNPs_109440 0 0 1 0 2 FSCN1 chr7:5643127 3'AG 5643127 Downstream 34bp
chr7 5643160 5643160 1 + T C COAD 5643158 + 5643138 5643178 41 GCTACTTTGACATCGAGTGGCGTGACCGGCGCATCACACTG GCTACTTTGACATCGAGTGGCGCGACCGGCGCATCACACTG < 41bp 0.568696659240557 0.814627857559474 0.46885842 0.35344315 prediction 0.491862396637833 Functional Gain - FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5643158 chr7:5643160 synonymous SNV . 0 23 hm5C_associated_SNPs_109440 0 0 1 0 2 FSCN1 chr7:5643248 5'GT 5643248 Upstream 89bp
chrX 24735711 24735711 1 + C A THCA 24735710 + 24735690 24735730 41 TCTGCAGAGGAAGTTTTCTCCCGGATGTCTCTTGTTGGGAC TCTGCAGAGGAAGTTTTCTCCAGGATGTCTCTTGTTGGGAC < 41bp 0.504760035018751 0.750684181312202 0.87621593 0.8153653 prediction 0.491848292586903 Functional Gain - POLA1 ENSG00000101868 CDS Human protein_coding chrX:24735710 chrX:24735711 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_109441 0 0 1 0 1 POLA1 chrX:24735697 3'AG 24735697 Downstream 15bp
chr19 55176625 55176625 1 + C T LUAD 55176624 + 55176604 55176644 41 ATGCCTACAGGGTCAGTCCCCCACAGTGGTGAGTGAGGGGC ATGCCTACAGGGTCAGTCCCCTACAGTGGTGAGTGAGGGGC < 41bp 0.501425003615815 0.747346918341203 0.12148458 0.66379946 prediction 0.491843829450775 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55176624 chr19:55176625 nonsynonymous SNV 0.031 0 22 hm5C_associated_SNPs_109443 0 0 0 0 2 LILRB4 chr19:55176581 3'AG 55176581 Downstream 45bp
chr19 55176625 55176625 1 + C T LUAD 55176624 + 55176604 55176644 41 ATGCCTACAGGGTCAGTCCCCCACAGTGGTGAGTGAGGGGC ATGCCTACAGGGTCAGTCCCCTACAGTGGTGAGTGAGGGGC < 41bp 0.501425003615815 0.747346918341203 0.12148458 0.66379946 prediction 0.491843829450775 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55176624 chr19:55176625 nonsynonymous SNV 0.031 0 22 hm5C_associated_SNPs_109443 0 0 0 0 2 LILRB4 chr19:55176631 5'GT 55176631 Upstream 7bp
chr1 76540564 76540564 1 + C G CHOL 76540563 + 76540543 76540583 41 CGGAGCGCCATGGCCTGCATCCTGAAGGTAACGACTTGGAT CGGAGCGCCATGGCCTGCATCGTGAAGGTAACGACTTGGAT < 41bp 0.478514613324951 0.745919662106023 0.16986412 0.54166424 prediction 0.491839324212047 Functional Gain - ST6GALNAC3 ENSG00000184005 CDS Human protein_coding chr1:76540563 chr1:76540564 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_109444 0 0 0 0 1 ST6GALNAC3 chr1:76540569 5'GT 76540569 Upstream 6bp
chr2 11773099 11773099 1 + C T COAD 11773098 + 11773078 11773118 41 AGGAGGAGCTGGGAATCAAGCCGCAGGACATCTGGCCTTTC AGGAGGAGCTGGGAATCAAGCTGCAGGACATCTGGCCTTTC < 41bp 0.523346925299227 0.769254922858782 0.2933995 0.3137996 prediction 0.491815995119109 Functional Gain - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11773098 chr2:11773099 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_109445 0 0 0 0 2 GREB1 chr2:11773015 3'AG 11773015 Downstream 85bp
chr2 11773099 11773099 1 + C T COAD 11773098 + 11773078 11773118 41 AGGAGGAGCTGGGAATCAAGCCGCAGGACATCTGGCCTTTC AGGAGGAGCTGGGAATCAAGCTGCAGGACATCTGGCCTTTC < 41bp 0.523346925299227 0.769254922858782 0.2933995 0.3137996 prediction 0.491815995119109 Functional Gain - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11773098 chr2:11773099 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_109445 0 0 0 0 2 GREB1 chr2:11773189 5'GT 11773189 Upstream 91bp
chr12 122674771 122674771 1 + C T rs77598875 122674770 + 122674750 122674790 41 ACCCTCCGGCACCTGCGACTCCTGGTGCTGCAGGGAAACCC ACCCTCCGGCACCTGCGACTCTTGGTGCTGCAGGGAAACCC < 41bp 0.523763714329992 0.769666033843452 0.26024073 0.27167577 prediction 0.49180463902692 Functional Gain - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122674770 chr12:122674771 synonymous SNV . 0 22 hm5C_associated_SNPs_109446 0 0 0 0 1 LRRC43 chr12:122674677 3'AG 122674677 Downstream 95bp
chr18 47091749 47091749 1 + C T UCEC 47091748 + 47091728 47091768 41 CCATCTGTGAGGTTTAACCTCCGCACCTCCAAGGACCCAGA CCATCTGTGAGGTTTAACCTCTGCACCTCCAAGGACCCAGA < 41bp 0.539194276868183 0.785090019650601 0.05226004 0.058109373 prediction 0.491791485564835 Functional Gain - LIPG ENSG00000101670 CDS Human protein_coding chr18:47091748 chr18:47091749 nonsynonymous SNV 0.689 3 22 hm5C_associated_SNPs_109448 0 0 0 0 1 LIPG chr18:47091687 3'AG 47091687 Downstream 63bp
chr10 43601914 43601914 1 + C T SKCM 43601913 + 43601893 43601933 41 CGGTACACAAGCACGCTGCTCCCCGGGGACACCTGGGCCCA CGGTACACAAGCACGCTGCTCTCCGGGGACACCTGGGCCCA < 41bp 0.484244211342376 0.745893640483988 0.45042974 0.5877374 prediction 0.491787280967977 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43601913 chr10:43601914 nonsynonymous SNV 0.203 0 22 hm5C_associated_SNPs_109449 0 0 0 0 1 RET chr10:43601824 3'AG 43601824 Downstream 91bp
chr7 99702683 99702683 1 + T C STAD 99702681 + 99702661 99702701 41 CCGACAGAGATGCGCATTGGCTTGACGGAAGAGTTTTGTGT CCGACAGAGATGCGCATTGGCTCGACGGAAGAGTTTTGTGT < 41bp 0.584211266964206 0.830088480160234 0.15774655 0.19699746 prediction 0.491754426392057 Functional Gain - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99702681 chr7:99702683 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_109452 0 0 1 0 2 AP4M1 chr7:99702668 3'AG 99702668 Downstream 16bp
chr7 99702683 99702683 1 + T C STAD 99702681 + 99702661 99702701 41 CCGACAGAGATGCGCATTGGCTTGACGGAAGAGTTTTGTGT CCGACAGAGATGCGCATTGGCTCGACGGAAGAGTTTTGTGT < 41bp 0.584211266964206 0.830088480160234 0.15774655 0.19699746 prediction 0.491754426392057 Functional Gain - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99702681 chr7:99702683 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_109452 0 0 1 0 2 AP4M1 chr7:99702721 5'GT 99702721 Upstream 39bp
chr4 155487073 155487073 1 + C T LUAD 155487072 + 155487052 155487092 41 TGGCTATCGGGCTCGTCCAGCCAAAGCAGCTGCCACTCAAA TGGCTATCGGGCTCGTCCAGCTAAAGCAGCTGCCACTCAAA < 41bp 0.495171867796343 0.745850747880145 0.5899197 0.44137922 prediction 0.49170149576029 Functional Gain - FGB ENSG00000171564 CDS Human protein_coding chr4:155487072 chr4:155487073 synonymous SNV . 0 22 hm5C_associated_SNPs_109457 0 0 1 4 1 FGB chr4:155487151 5'GT 155487151 Upstream 79bp
chr2 121742237 121742237 1 + C T SKCM 121742236 + 121742216 121742256 41 CCGGCACGGAGCCTGGCGGCCCAGAGAGCACCGAGGCCAGC CCGGCACGGAGCCTGGCGGCCTAGAGAGCACCGAGGCCAGC < 41bp 0.518982018663155 0.764822904859459 0.74358267 0.5165615 prediction 0.491681772392609 Functional Gain - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121742236 chr2:121742237 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_109460 0 0 0 0 1 GLI2 chr2:121742319 5'GT 121742319 Upstream 83bp
chr19 17651320 17651320 1 + C A rs548734371 17651319 + 17651299 17651339 41 CTCGAGGCGGTGCGGACCCTCCTGGCTCAAGGCATGGACCG CTCGAGGCGGTGCGGACCCTCATGGCTCAAGGCATGGACCG < 41bp 0.507643563120278 0.753478171438615 0.20480064 0.32570454 prediction 0.491669216636675 Functional Gain - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17651319 chr19:17651320 nonsynonymous SNV 0.069 2 22 hm5C_associated_SNPs_109462 0 0 0 0 1 FAM129C chr19:17651391 5'GT 17651391 Upstream 72bp
chr2 217525337 217525337 1 + T C UCEC 217525335 + 217525315 217525355 41 GAGAACCACGTGGACAGCACCATGAACATGTTGGGCGGGGG GAGAACCACGTGGACAGCACCACGAACATGTTGGGCGGGGG < 41bp 0.551735515673001 0.797569585866509 0.2725348 0.28645718 prediction 0.491668140387016 Functional Gain - IGFBP2 ENSG00000115457 CDS Human protein_coding chr2:217525335 chr2:217525337 nonsynonymous SNV 0.951 0 23 hm5C_associated_SNPs_109463 0 0 1 0 1 IGFBP2 chr2:217525280 3'AG 217525280 Downstream 58bp
chr17 8370302 8370302 1 + T C KIRP 8370300 + 8370280 8370320 41 CTCCTGGTCTGGGCTCCTCGCGTCCATCGTCAGCGCCGGGT CTCCTGGTCTGGGCTCCTCGCGCCCATCGTCAGCGCCGGGT < 41bp 0.519103697305413 0.764935921670757 0.38973242 0.07688874 prediction 0.491664448730688 Functional Gain - NDEL1 ENSG00000166579 CDS Human protein_coding chr17:8370300 chr17:8370302 synonymous SNV . 0 23 hm5C_associated_SNPs_109464 0 0 1 0 1 NDEL1 chr17:8370248 3'AG 8370248 Downstream 55bp
chr2 201473833 201473833 1 + C A UCEC 201473829 + 201473809 201473849 41 TCCTGAAGCATTTGGGAACTCTGGCTGGGTCCCAGATCAGG TCCTGAAGCATTTGGGAACTCTGGATGGGTCCCAGATCAGG < 41bp 0.67968874400758 0.925520154572716 0.18912947 0.36761534 prediction 0.491662821130272 Functional Gain - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201473829 chr2:201473833 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_109465 0 0 0 0 1 AOX1 chr2:201473858 5'GT 201473858 Upstream 26bp
chr8 37607351 37607351 1 + C A LIHC 37607350 + 37607330 37607370 41 CCCAACATACCAGAGGCAATCCGCAGAAACTACGAGTTGAT CCCAACATACCAGAGGCAATCAGCAGAAACTACGAGTTGAT < 41bp 0.544542207182336 0.790355944696902 0.17811957 0.65107423 prediction 0.491627475029133 Functional Gain - ERLIN2 ENSG00000147475 CDS Human protein_coding chr8:37607350 chr8:37607351 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_109469 0 0 1 0 2 ERLIN2 chr8:37607312 3'AG 37607312 Downstream 40bp
chr8 37607351 37607351 1 + C A LIHC 37607350 + 37607330 37607370 41 CCCAACATACCAGAGGCAATCCGCAGAAACTACGAGTTGAT CCCAACATACCAGAGGCAATCAGCAGAAACTACGAGTTGAT < 41bp 0.544542207182336 0.790355944696902 0.17811957 0.65107423 prediction 0.491627475029133 Functional Gain - ERLIN2 ENSG00000147475 CDS Human protein_coding chr8:37607350 chr8:37607351 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_109469 0 0 1 0 2 ERLIN2 chr8:37607370 5'GT 37607370 Upstream 20bp
chr8 38884240 38884240 1 + T C CESC 38884238 + 38884218 38884258 41 CATTTGCTTCCATTGTTGCTCATGAATTGGGTCATAATCTT CATTTGCTTCCATTGTTGCTCACGAATTGGGTCATAATCTT < 41bp 0.454219134817774 0.745810365251788 0.188245 0.08774221 prediction 0.491620730503576 Functional Gain - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38884238 chr8:38884240 synonymous SNV . 0 23 hm5C_associated_SNPs_109470 0 0 1 0 2 ADAM9 chr8:38884196 3'AG 38884196 Downstream 45bp
chr8 38884240 38884240 1 + T C CESC 38884238 + 38884218 38884258 41 CATTTGCTTCCATTGTTGCTCATGAATTGGGTCATAATCTT CATTTGCTTCCATTGTTGCTCACGAATTGGGTCATAATCTT < 41bp 0.454219134817774 0.745810365251788 0.188245 0.08774221 prediction 0.491620730503576 Functional Gain - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38884238 chr8:38884240 synonymous SNV . 0 23 hm5C_associated_SNPs_109470 0 0 1 0 2 ADAM9 chr8:38884329 5'GT 38884329 Upstream 90bp
chr12 13224300 13224300 1 + C G ESCA 13224299 + 13224279 13224319 41 GTCTGTCTTCCTCTTCTGGGCCGAAGGGCTGTCAGCTGCAT GTCTGTCTTCCTCTTCTGGGCGGAAGGGCTGTCAGCTGCAT < 41bp 0.42442558428594 0.745798119042317 0.16721481 0.3740837 prediction 0.491596238084634 Functional Gain - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13224299 chr12:13224300 synonymous SNV . 0 22 hm5C_associated_SNPs_109471 0 0 1 0 1 FAM234B chr12:13224330 5'GT 13224330 Upstream 31bp
chr17 56276500 56276500 1 + C T BLCA 56276499 + 56276479 56276519 41 CCGAGCTGAGACGCCTGAATCCCCGGTGGAATGGAGACAAA CCGAGCTGAGACGCCTGAATCTCCGGTGGAATGGAGACAAA < 41bp 0.555449439678313 0.801245916033166 0.71794426 0.90216535 prediction 0.491592952709708 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56276499 chr17:56276500 nonsynonymous SNV 0.160 4 22 hm5C_associated_SNPs_109472 0 0 0 0 2 EPX chr17:56276401 3'AG 56276401 Downstream 100bp
chr17 56276500 56276500 1 + C T BLCA 56276499 + 56276479 56276519 41 CCGAGCTGAGACGCCTGAATCCCCGGTGGAATGGAGACAAA CCGAGCTGAGACGCCTGAATCTCCGGTGGAATGGAGACAAA < 41bp 0.555449439678313 0.801245916033166 0.71794426 0.90216535 prediction 0.491592952709708 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56276499 chr17:56276500 nonsynonymous SNV 0.160 4 22 hm5C_associated_SNPs_109472 0 0 0 0 2 EPX chr17:56276561 5'GT 56276561 Upstream 62bp
chr20 11900441 11900441 1 + C T UCEC 11900440 + 11900420 11900460 41 GCAGAGGACAAAGATGAAATCCGTATACCAGATGTCGAACC GCAGAGGACAAAGATGAAATCTGTATACCAGATGTCGAACC < 41bp 0.511067510953081 0.756863090779151 0.3532074 0.253129 prediction 0.491591159652141 Functional Gain - BTBD3 ENSG00000132640 CDS Human protein_coding chr20:11900440 chr20:11900441 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_109473 0 0 1 0 2 BTBD3 chr20:11900366 3'AG 11900366 Downstream 76bp
chr20 11900441 11900441 1 + C T UCEC 11900440 + 11900420 11900460 41 GCAGAGGACAAAGATGAAATCCGTATACCAGATGTCGAACC GCAGAGGACAAAGATGAAATCTGTATACCAGATGTCGAACC < 41bp 0.511067510953081 0.756863090779151 0.3532074 0.253129 prediction 0.491591159652141 Functional Gain - BTBD3 ENSG00000132640 CDS Human protein_coding chr20:11900440 chr20:11900441 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_109473 0 0 1 0 2 BTBD3 chr20:11900484 5'GT 11900484 Upstream 44bp
chr3 100455502 100455502 1 + C A rs140669729 100455498 + 100455478 100455518 41 CTCCTCAGCAGCTCACCCACCAGGCGTTCAGCCACAGCAGC CTCCTCAGCAGCTCACCCACCAGGAGTTCAGCCACAGCAGC < 41bp 0.680938149692937 0.926730123252018 0.89172685 0.8893323 prediction 0.491583947118162 Functional Gain - TFG ENSG00000114354 CDS Human protein_coding chr3:100455498 chr3:100455502 synonymous SNV . 0 25 hm5C_associated_SNPs_109475 1 0 1 0 3 TFG chr3:100455420 3'AG 100455420 Downstream 83bp
chr3 100455502 100455502 1 + C A rs140669729 100455498 + 100455478 100455518 41 CTCCTCAGCAGCTCACCCACCAGGCGTTCAGCCACAGCAGC CTCCTCAGCAGCTCACCCACCAGGAGTTCAGCCACAGCAGC < 41bp 0.680938149692937 0.926730123252018 0.89172685 0.8893323 prediction 0.491583947118162 Functional Gain - TFG ENSG00000114354 CDS Human protein_coding chr3:100455498 chr3:100455502 synonymous SNV . 0 25 hm5C_associated_SNPs_109475 1 0 1 0 3 TFG chr3:100455548 5'GT 100455548 Upstream 47bp
chr3 100455502 100455502 1 + C A rs140669729 100455498 + 100455478 100455518 41 CTCCTCAGCAGCTCACCCACCAGGCGTTCAGCCACAGCAGC CTCCTCAGCAGCTCACCCACCAGGAGTTCAGCCACAGCAGC < 41bp 0.680938149692937 0.926730123252018 0.89172685 0.8893323 prediction 0.491583947118162 Functional Gain - TFG ENSG00000114354 CDS Human protein_coding chr3:100455498 chr3:100455502 synonymous SNV . 0 25 hm5C_associated_SNPs_109475 1 0 1 0 3 TFG chr3:100455560 5'GT 100455560 Upstream 59bp
chr5 122940462 122940462 1 + C A LIHC 122940461 + 122940441 122940481 41 GTTAAACACAGATGACCCCACCGCAGGACGTTCAAATGCAC GTTAAACACAGATGACCCCACAGCAGGACGTTCAAATGCAC < 41bp 0.505741389384681 0.751531749156924 0.056879222 0.060409784 prediction 0.491580719544486 Functional Gain - CSNK1G3 ENSG00000151292 CDS Human protein_coding chr5:122940461 chr5:122940462 synonymous SNV . 0 22 hm5C_associated_SNPs_109476 0 0 1 0 2 CSNK1G3 chr5:122940418 3'AG 122940418 Downstream 45bp
chr5 122940462 122940462 1 + C A LIHC 122940461 + 122940441 122940481 41 GTTAAACACAGATGACCCCACCGCAGGACGTTCAAATGCAC GTTAAACACAGATGACCCCACAGCAGGACGTTCAAATGCAC < 41bp 0.505741389384681 0.751531749156924 0.056879222 0.060409784 prediction 0.491580719544486 Functional Gain - CSNK1G3 ENSG00000151292 CDS Human protein_coding chr5:122940461 chr5:122940462 synonymous SNV . 0 22 hm5C_associated_SNPs_109476 0 0 1 0 2 CSNK1G3 chr5:122940524 5'GT 122940524 Upstream 63bp
chr6 80751871 80751871 1 + T C STAD 80751869 + 80751849 80751889 41 ACTATAGTGGTGGTGAAAGTCATAATTCTTCATCCTCCAAG ACTATAGTGGTGGTGAAAGTCACAATTCTTCATCCTCCAAG < 41bp 0.541807597932796 0.787590572449641 0.121753454 0.09074217 prediction 0.491565949033692 Functional Gain - TTK ENSG00000112742 CDS Human protein_coding chr6:80751869 chr6:80751871 synonymous SNV . 0 23 hm5C_associated_SNPs_109480 0 0 1 0 1 TTK chr6:80751836 3'AG 80751836 Downstream 36bp
chr1 206331102 206331102 1 + C A UCEC 206331101 + 206331081 206331121 41 CCAGCTGGGCCCCTCTGGATCCTGGGGGATGTCTTCATTCG CCAGCTGGGCCCCTCTGGATCATGGGGGATGTCTTCATTCG < 41bp 0.503712157609316 0.749495040552388 0.646241 0.9307643 prediction 0.491565765886146 Functional Gain - CTSE ENSG00000196188 CDS Human protein_coding chr1:206331101 chr1:206331102 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_109481 0 0 0 0 1 CTSE chr1:206331021 3'AG 206331021 Downstream 82bp
chr17 4436298 4436298 1 + C G rs202128566 4436294 + 4436274 4436314 41 GCAGCTACGTCTTCTCCTCCCTGGCCACGTCGGCTGTCTCC GCAGCTACGTCTTCTCCTCCCTGGGCACGTCGGCTGTCTCC < 41bp 0.602647478232654 0.848429922236081 0.051561147 0.19431701 prediction 0.491564888006854 Functional Gain - SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4436294 chr17:4436298 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_109482 0 0 0 0 1 SPNS2 chr17:4436272 3'AG 4436272 Downstream 27bp
chr17 4795494 4795494 1 + C T rs201175554 4795493 + 4795473 4795513 41 TGCCCTTAACACCAGTGGGGCCGGAGGGTCCCGGCCAGCCC TGCCCTTAACACCAGTGGGGCTGGAGGGTCCCGGCCAGCCC < 41bp 0.519567845695095 0.765345998458495 0.66443646 0.4005066 prediction 0.491556305526799 Functional Gain - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4795493 chr17:4795494 synonymous SNV . 0 22 hm5C_associated_SNPs_109483 0 0 1 0 2 MINK1 chr17:4795444 3'AG 4795444 Downstream 51bp
chr17 4795494 4795494 1 + C T rs201175554 4795493 + 4795473 4795513 41 TGCCCTTAACACCAGTGGGGCCGGAGGGTCCCGGCCAGCCC TGCCCTTAACACCAGTGGGGCTGGAGGGTCCCGGCCAGCCC < 41bp 0.519567845695095 0.765345998458495 0.66443646 0.4005066 prediction 0.491556305526799 Functional Gain - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4795493 chr17:4795494 synonymous SNV . 0 22 hm5C_associated_SNPs_109483 0 0 1 0 2 MINK1 chr17:4795529 5'GT 4795529 Upstream 36bp
chr16 20432615 20432615 1 + A G LGG 20432612 + 20432592 20432632 41 AGAGCACAACTGCATGAGGACAAAGAGTCGAGACCCGCTGG AGAGCACAACTGCATGAGGACAAGGAGTCGAGACCCGCTGG < 41bp 0.499074390947517 0.745771224334583 0.09779048 0.38173357 prediction 0.491542448669165 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20432612 chr16:20432615 nonsynonymous SNV 0.876 0 24 hm5C_associated_SNPs_109484 0 0 0 0 1 ACSM5 chr16:20432580 3'AG 20432580 Downstream 36bp
chr22 40800400 40800400 1 + C G rs143730708 40800399 + 40800379 40800419 41 AAGATTGCCGTCTCCCTACCCCGCTCTGAGAAGCTCCGCTC AAGATTGCCGTCTCCCTACCCGGCTCTGAGAAGCTCCGCTC < 41bp 0.430832573268457 0.745769382945703 0.13426039 0.6683225 prediction 0.491538765891406 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40800399 chr22:40800400 nonsynonymous SNV 0.969 2 22 hm5C_associated_SNPs_109487 0 0 1 0 2 SGSM3 chr22:40800313 3'AG 40800313 Downstream 88bp
chr22 40800400 40800400 1 + C G rs143730708 40800399 + 40800379 40800419 41 AAGATTGCCGTCTCCCTACCCCGCTCTGAGAAGCTCCGCTC AAGATTGCCGTCTCCCTACCCGGCTCTGAGAAGCTCCGCTC < 41bp 0.430832573268457 0.745769382945703 0.13426039 0.6683225 prediction 0.491538765891406 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40800399 chr22:40800400 nonsynonymous SNV 0.969 2 22 hm5C_associated_SNPs_109487 0 0 1 0 2 SGSM3 chr22:40800459 5'GT 40800459 Upstream 60bp
chr1 205033496 205033496 1 + C T rs145911280 205033495 + 205033475 205033515 41 TCCCGTGAGGCGTCTGATCCCCGCGGCCCGCGGGGGAGAGA TCCCGTGAGGCGTCTGATCCCTGCGGCCCGCGGGGGAGAGA < 41bp 0.511448379336969 0.757211781782379 0.8590882 0.41913256 prediction 0.491526804890819 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205033495 chr1:205033496 synonymous SNV . 0 22 hm5C_associated_SNPs_109488 0 0 0 0 1 CNTN2 chr1:205033450 3'AG 205033450 Downstream 47bp
chr19 12014456 12014456 1 + C A UCEC 12014455 + 12014435 12014475 41 GTGGGCTTTGCTGGATATTTCCCAGAGGAAACTCTACAAGG GTGGGCTTTGCTGGATATTTCACAGAGGAAACTCTACAAGG < 41bp 0.518877532138103 0.764635667916443 0.24858642 0.47779036 prediction 0.49151627155668 Functional Gain - ZNF69 ENSG00000198429 CDS Human protein_coding chr19:12014455 chr19:12014456 synonymous SNV . 0 22 hm5C_associated_SNPs_109490 0 0 0 0 2 ZNF69 chr19:12014430 3'AG 12014430 Downstream 27bp
chr19 12014456 12014456 1 + C A UCEC 12014455 + 12014435 12014475 41 GTGGGCTTTGCTGGATATTTCCCAGAGGAAACTCTACAAGG GTGGGCTTTGCTGGATATTTCACAGAGGAAACTCTACAAGG < 41bp 0.518877532138103 0.764635667916443 0.24858642 0.47779036 prediction 0.49151627155668 Functional Gain - ZNF69 ENSG00000198429 CDS Human protein_coding chr19:12014455 chr19:12014456 synonymous SNV . 0 22 hm5C_associated_SNPs_109490 0 0 0 0 2 ZNF69 chr19:12014514 5'GT 12014514 Upstream 59bp
chr6 43267784 43267784 1 + C A LUAD 43267783 + 43267763 43267803 41 AGCTGTCACCCTGCCTTGTGCCCCAGGCATCCTCAGCCTCT AGCTGTCACCCTGCCTTGTGCACCAGGCATCCTCAGCCTCT < 41bp 0.492106341266079 0.745758029321551 0.12947279 0.2338705 prediction 0.491516058643102 Functional Gain - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43267783 chr6:43267784 synonymous SNV . 0 22 hm5C_associated_SNPs_109491 0 0 0 0 1 SLC22A7 chr6:43267804 5'GT 43267804 Upstream 21bp
chrX 70832327 70832327 1 + C A LUAD 70832326 + 70832306 70832346 41 AGGAAATCCAACAGGATACACCCGGAGCTGCCCAGGGTCAC AGGAAATCCAACAGGATACACACGGAGCTGCCCAGGGTCAC < 41bp 0.537658760260193 0.783414300510112 0.27698565 0.20959601 prediction 0.491511080499838 Functional Gain - GCNA ENSG00000147174 CDS Human protein_coding chrX:70832326 chrX:70832327 nonsynonymous SNV 0.761 3 22 hm5C_associated_SNPs_109492 0 0 0 0 1 GCNA chrX:70832409 5'GT 70832409 Upstream 83bp
chrX 54837340 54837340 1 + C T rs1043044 54837339 + 54837319 54837359 41 TGGCCGAAGGGTCTCAAAGGCCCTAATGGCCTCAATGGCCC TGGCCGAAGGGTCTCAAAGGCTCTAATGGCCTCAATGGCCC < 41bp 0.552371924632442 0.798118250760731 0.07818183 0.8968208 prediction 0.491492652256579 Functional Gain - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54837339 chrX:54837340 synonymous SNV . 0 22 hm5C_associated_SNPs_109494 0 0 1 0 1 MAGED2 chrX:54837254 3'AG 54837254 Downstream 87bp
chr22 21370278 21370278 1 + C T UCEC 21370277 + 21370257 21370297 41 ACCAGGAGCGGGACCTGGAACCCCAGTTTTCCATCATCACC ACCAGGAGCGGGACCTGGAACTCCAGTTTTCCATCATCACC < 41bp 0.546606768970607 0.792346442445865 0.05199033 0.56954783 prediction 0.491479346950517 Functional Gain - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21370277 chr22:21370278 nonsynonymous SNV 0.470 3 22 hm5C_associated_SNPs_109497 0 0 0 0 1 P2RX6 chr22:21370231 3'AG 21370231 Downstream 48bp
chr5 167553835 167553835 1 + C A rs113328312 167553831 + 167553811 167553851 41 CCGCTGTGAAGAGGGCTGGACAGGCGCAGCGTGTGACCAGC CCGCTGTGAAGAGGGCTGGACAGGAGCAGCGTGTGACCAGC < 41bp 0.409904338869083 0.745714986591058 0.41395935 0.5110229 prediction 0.491429973182116 Functional Gain - TENM2 ENSG00000145934 CDS Human protein_coding chr5:167553831 chr5:167553835 synonymous SNV . 0 25 hm5C_associated_SNPs_109499 0 0 0 0 1 TENM2 chr5:167553759 3'AG 167553759 Downstream 77bp
chr1 1458897 1458897 1 + C A UCEC 1458896 + 1458876 1458916 41 CTTCCCCTCCGGCAGGTCAGCCGGCGGCTCCTCAGTCGACC CTTCCCCTCCGGCAGGTCAGCAGGCGGCTCCTCAGTCGACC < 41bp 0.537112675799732 0.782819322263905 0.90714514 0.90934503 prediction 0.491413292928347 Functional Gain - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1458896 chr1:1458897 synonymous SNV . 0 22 hm5C_associated_SNPs_109504 0 0 1 0 1 ATAD3A chr1:1458891 3'AG 1458891 Downstream 7bp
chr19 15221490 15221490 1 + C A LUAD 15221489 + 15221469 15221509 41 GAGCGGGAGCGGCCCCCCGGCCAGGTGCCCCTCATCATCCA GAGCGGGAGCGGCCCCCCGGCAAGGTGCCCCTCATCATCCA < 41bp 0.500427516278474 0.746129836081316 0.21700555 0.28432304 prediction 0.491404639605685 Functional Gain - SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15221489 chr19:15221490 nonsynonymous SNV 0.831 0 22 hm5C_associated_SNPs_109506 0 0 0 0 1 SYDE1 chr19:15221546 5'GT 15221546 Upstream 57bp
chr1 236706782 236706782 1 + T G rs535541594 236706779 + 236706759 236706799 41 GGTCATGGCTCTGAAACATTCCGTAGTGTTCTTTGGACACG GGTCATGGCTCTGAAACATTCCGGAGTGTTCTTTGGACACG < 41bp 0.385918348223703 0.745698706722087 0.1525228 0.50675076 prediction 0.491397413444175 Functional Gain - LGALS8 ENSG00000230325 ncRNA_intronic Human antisense chr1:236706779 chr1:236706782 . . 0 24 hm5C_associated_SNPs_109508 0 0 0 0 1 LGALS8 chr1:236706727 3'AG 236706727 Downstream 56bp
chr2 3428411 3428411 1 + C T UCEC 3428410 + 3428390 3428430 41 ATCTTTATTACGAGTACTACCCGCACGTGTACCCTGGGCGC ATCTTTATTACGAGTACTACCTGCACGTGTACCCTGGGCGC < 41bp 0.524882199128223 0.770579307549082 0.09748459 0.2716333 prediction 0.491394216841717 Functional Gain - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3428410 chr2:3428411 nonsynonymous SNV 0.938 4 22 hm5C_associated_SNPs_109509 0 0 1 0 1 TRAPPC12 chr2:3428434 5'GT 3428434 Upstream 24bp
chr19 55177714 55177714 1 + C A rs201125273 55177710 + 55177690 55177730 41 GCCCAGAGACAGGCTGATTTCCAACGTCCTCCAGGGGCTGC GCCCAGAGACAGGCTGATTTCCAAAGTCCTCCAGGGGCTGC < 41bp 0.344239298451133 0.745688746519865 0.12021908 0.4110697 prediction 0.491377493039729 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55177710 chr19:55177714 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_109511 0 0 0 0 2 LILRB4 chr19:55177691 3'AG 55177691 Downstream 24bp
chr19 55177714 55177714 1 + C A rs201125273 55177710 + 55177690 55177730 41 GCCCAGAGACAGGCTGATTTCCAACGTCCTCCAGGGGCTGC GCCCAGAGACAGGCTGATTTCCAAAGTCCTCCAGGGGCTGC < 41bp 0.344239298451133 0.745688746519865 0.12021908 0.4110697 prediction 0.491377493039729 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55177710 chr19:55177714 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_109511 0 0 0 0 2 LILRB4 chr19:55177766 5'GT 55177766 Upstream 53bp
chr16 72110231 72110231 1 + C A LUAD 72110230 + 72110210 72110250 41 AAGCCCAAGAATCCGGCAAACCCAGTGCAGCGGATCCTGGG AAGCCCAAGAATCCGGCAAACACAGTGCAGCGGATCCTGGG < 41bp 0.537118971046233 0.782804581001634 0.5101534 0.31473607 prediction 0.491371219910802 Functional Gain - HPR ENSG00000261701 CDS Human protein_coding chr16:72110230 chr16:72110231 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_109512 0 0 0 0 1 HPR chr16:72110202 3'AG 72110202 Downstream 30bp
chr6 88046794 88046794 1 + C A SKCM 88046793 + 88046773 88046813 41 AACATTCAAAAAGGAACCACCCAAAGAGAAAGAGTTTCAAA AACATTCAAAAAGGAACCACCAAAAGAGAAAGAGTTTCAAA < 41bp 0.517646975735969 0.763309092395681 0.08226028 0.3211578 prediction 0.491324233319426 Functional Gain - SMIM8 ENSG00000111850;ENSG00000226524 CDS Human other chr6:88046793 chr6:88046794 synonymous SNV . 0 22 hm5C_associated_SNPs_109515 0 0 1 0 2 SMIM8 chr6:88046727 3'AG 88046727 Downstream 68bp
chr6 88046794 88046794 1 + C A SKCM 88046793 + 88046773 88046813 41 AACATTCAAAAAGGAACCACCCAAAGAGAAAGAGTTTCAAA AACATTCAAAAAGGAACCACCAAAAGAGAAAGAGTTTCAAA < 41bp 0.517646975735969 0.763309092395681 0.08226028 0.3211578 prediction 0.491324233319426 Functional Gain - SMIM8 ENSG00000111850;ENSG00000226524 CDS Human other chr6:88046793 chr6:88046794 synonymous SNV . 0 22 hm5C_associated_SNPs_109515 0 0 1 0 2 SMIM8 chr6:88046884 5'GT 88046884 Upstream 91bp
chr3 192980784 192980784 1 + C A rs35525262 192980780 + 192980760 192980800 41 TGGCATTCCTGCGTCCTTTACAAGCGCCAAGTCTGTATTCA TGGCATTCCTGCGTCCTTTACAAGAGCCAAGTCTGTATTCA < 41bp 0.34120955877336 0.745651857111271 0.54900205 0.7136717 prediction 0.491303714222543 Functional Gain - HRASLS ENSG00000127252 CDS Human protein_coding chr3:192980780 chr3:192980784 nonsynonymous SNV 0.946 3 25 hm5C_associated_SNPs_109516 0 0 0 0 1 HRASLS chr3:192980759 3'AG 192980759 Downstream 26bp
chr1 204913457 204913457 1 + C A UCEC 204913453 + 204913433 204913473 41 AGGTGCCGAGGATGGCCAGGCAGCCACCGCCGCCCTGGGTC AGGTGCCGAGGATGGCCAGGCAGCAACCGCCGCCCTGGGTC < 41bp 0.380143032780101 0.745649295923894 0.68859196 0.71259093 prediction 0.491298591847788 Functional Gain - NFASC ENSG00000163531 CDS Human protein_coding chr1:204913453 chr1:204913457 nonsynonymous SNV 0.202 0 25 hm5C_associated_SNPs_109518 0 0 0 0 1 NFASC chr1:204913534 5'GT 204913534 Upstream 78bp
chr20 2736418 2736418 1 + C T rs188421286 2736417 + 2736397 2736437 41 CTTCGCCCCCGTGCTGCGCCCCCCAAGCTCCCCACCCCAGG CTTCGCCCCCGTGCTGCGCCCTCCAAGCTCCCCACCCCAGG < 41bp 0.471571081705933 0.745645003411738 0.15702027 0.95568734 prediction 0.491290006823475 Functional Gain - EBF4 ENSG00000088881 CDS Human protein_coding chr20:2736417 chr20:2736418 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_109520 0 0 1 0 2 EBF4 chr20:2736389 3'AG 2736389 Downstream 30bp
chr20 2736418 2736418 1 + C T rs188421286 2736417 + 2736397 2736437 41 CTTCGCCCCCGTGCTGCGCCCCCCAAGCTCCCCACCCCAGG CTTCGCCCCCGTGCTGCGCCCTCCAAGCTCCCCACCCCAGG < 41bp 0.471571081705933 0.745645003411738 0.15702027 0.95568734 prediction 0.491290006823475 Functional Gain - EBF4 ENSG00000088881 CDS Human protein_coding chr20:2736417 chr20:2736418 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_109520 0 0 1 0 2 EBF4 chr20:2736470 5'GT 2736470 Upstream 53bp
chr15 40756081 40756081 1 + C T STAD 40756080 + 40756060 40756100 41 GATGAGCCGGAGCCAGCCATCCGAAAGAGCTACCAGGCGGT GATGAGCCGGAGCCAGCCATCTGAAAGAGCTACCAGGCGGT < 41bp 0.530570447476502 0.776195332450468 0.4344024 0.31217867 prediction 0.491249769947932 Functional Gain - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40756080 chr15:40756081 stopgain 1.000 1 22 hm5C_associated_SNPs_109522 0 0 1 0 1 BAHD1 chr15:40756060 3'AG 40756060 Downstream 22bp
chr19 42409915 42409915 1 + C T HNSC 42409914 + 42409894 42409934 41 AGCACTTCCTCCCCTCAGCACCCGAGAACCCCTCCTCAGCA AGCACTTCCTCCCCTCAGCACTCGAGAACCCCTCCTCAGCA < 41bp 0.542747218978162 0.788369230775347 0.4349947 0.757859 prediction 0.491244023594369 Functional Gain - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42409914 chr19:42409915 synonymous SNV . 0 22 hm5C_associated_SNPs_109523 0 0 1 0 2 ARHGEF1 chr19:42409912 3'AG 42409912 Downstream 4bp
chr19 42409915 42409915 1 + C T HNSC 42409914 + 42409894 42409934 41 AGCACTTCCTCCCCTCAGCACCCGAGAACCCCTCCTCAGCA AGCACTTCCTCCCCTCAGCACTCGAGAACCCCTCCTCAGCA < 41bp 0.542747218978162 0.788369230775347 0.4349947 0.757859 prediction 0.491244023594369 Functional Gain - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42409914 chr19:42409915 synonymous SNV . 0 22 hm5C_associated_SNPs_109523 0 0 1 0 2 ARHGEF1 chr19:42409979 5'GT 42409979 Upstream 65bp
chrX 2928180 2928180 1 + C T SKCM 2928179 + 2928159 2928199 41 GCCTTCCTGACCGGCCGGTACCCCATCAGATCAGGTGAGGC GCCTTCCTGACCGGCCGGTACTCCATCAGATCAGGTGAGGC < 41bp 0.472195753505533 0.745619797886898 0.12660038 0.9666942 prediction 0.491239595773796 Functional Gain - ARSH ENSG00000205667 CDS Human protein_coding chrX:2928179 chrX:2928180 nonsynonymous SNV 0.983 4 22 hm5C_associated_SNPs_109525 0 0 0 0 1 ARSH chrX:2928192 5'GT 2928192 Upstream 13bp
chr19 7595268 7595268 1 + C T ESCA 7595267 + 7595247 7595287 41 GCCATGCAGGCGCAGCAGGGCCGCAGCAGCCTGGTGTGGCT GCCATGCAGGCGCAGCAGGGCTGCAGCAGCCTGGTGTGGCT < 41bp 0.528187582696493 0.773806160185315 0.21682885 0.40575925 prediction 0.491237154977646 Functional Gain - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7595267 chr19:7595268 nonsynonymous SNV 0.952 2 22 hm5C_associated_SNPs_109526 0 0 0 0 1 MCOLN1 chr19:7595172 3'AG 7595172 Downstream 97bp
chrX 69672591 69672591 1 + C G rs186178441 69672590 + 69672570 69672610 41 GCCGCTCCGCTCCCTGCGGCCCGGAGGGGATGCCAGGTAGG GCCGCTCCGCTCCCTGCGGCCGGGAGGGGATGCCAGGTAGG < 41bp 0.626159664999437 0.871776684521962 0.834864 0.90862906 prediction 0.49123403904505 Functional Gain - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69672590 chrX:69672591 synonymous SNV . 0 22 hm5C_associated_SNPs_109528 0 0 0 0 1 DLG3 chrX:69672605 5'GT 69672605 Upstream 15bp
chr9 17330767 17330767 1 + C T LUSC 17330766 + 17330746 17330786 41 ATCTGCCAACAAGGGTTTCTCCCGAAAGAGCATCATGACAA ATCTGCCAACAAGGGTTTCTCTCGAAAGAGCATCATGACAA < 41bp 0.510681904142479 0.756295404354565 0.14737162 0.8987669 prediction 0.491227000424171 Functional Gain - CNTLN ENSG00000044459 CDS Human protein_coding chr9:17330766 chr9:17330767 synonymous SNV . 0 22 hm5C_associated_SNPs_109529 0 0 1 0 1 CNTLN chr9:17330806 5'GT 17330806 Upstream 40bp
chr2 85533670 85533670 1 + C T rs41288839 85533669 + 85533649 85533689 41 GCTCTACCCAACCTGGTCAGCCCGGGACAACTATGTAAGTG GCTCTACCCAACCTGGTCAGCTCGGGACAACTATGTAAGTG < 41bp 0.500931087554079 0.746525957331378 0.252701 0.21750045 prediction 0.491189739554598 Functional Gain - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85533669 chr2:85533670 synonymous SNV . 0 22 hm5C_associated_SNPs_109533 0 0 0 0 2 TCF7L1 chr2:85533575 3'AG 85533575 Downstream 96bp
chr2 85533670 85533670 1 + C T rs41288839 85533669 + 85533649 85533689 41 GCTCTACCCAACCTGGTCAGCCCGGGACAACTATGTAAGTG GCTCTACCCAACCTGGTCAGCTCGGGACAACTATGTAAGTG < 41bp 0.500931087554079 0.746525957331378 0.252701 0.21750045 prediction 0.491189739554598 Functional Gain - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85533669 chr2:85533670 synonymous SNV . 0 22 hm5C_associated_SNPs_109533 0 0 0 0 2 TCF7L1 chr2:85533682 5'GT 85533682 Upstream 13bp
chr9 116037961 116037961 1 + C G rs113213009 116037957 + 116037937 116037977 41 CGCACTTCCCCTCTGCTGGGCGCGCGGTGGACGGTCTGAAA CGCACTTCCCCTCTGCTGGGCGCGGGGTGGACGGTCTGAAA < 41bp 0.534581999795163 0.780172706527087 0.46160224 0.8283706 prediction 0.491181413463849 Functional Gain - PRPF4 ENSG00000136875 UTR5 Human protein_coding chr9:116037957 chr9:116037961 . . 0 25 hm5C_associated_SNPs_109534 0 0 0 0 1 PRPF4 chr9:116038050 5'GT 116038050 Upstream 90bp
chr12 58140851 58140851 1 + T C SKCM 58140849 + 58140829 58140869 41 AGATGTGTGGAGAAAAGTTTCTTAAGCATTCAGACGAAGCC AGATGTGTGGAGAAAAGTTTCTCAAGCATTCAGACGAAGCC < 41bp 0.587821978194078 0.833387303480041 0.09374973 0.06632963 prediction 0.491130650571925 Functional Gain - TSPAN31 ENSG00000135452 CDS Human protein_coding chr12:58140849 chr12:58140851 synonymous SNV . 0 23 hm5C_associated_SNPs_109539 0 0 1 0 2 TSPAN31 chr12:58140801 3'AG 58140801 Downstream 51bp
chr12 58140851 58140851 1 + T C SKCM 58140849 + 58140829 58140869 41 AGATGTGTGGAGAAAAGTTTCTTAAGCATTCAGACGAAGCC AGATGTGTGGAGAAAAGTTTCTCAAGCATTCAGACGAAGCC < 41bp 0.587821978194078 0.833387303480041 0.09374973 0.06632963 prediction 0.491130650571925 Functional Gain - TSPAN31 ENSG00000135452 CDS Human protein_coding chr12:58140849 chr12:58140851 synonymous SNV . 0 23 hm5C_associated_SNPs_109539 0 0 1 0 2 TSPAN31 chr12:58140914 5'GT 58140914 Upstream 64bp
chr6 50712878 50712878 1 + C A LUAD 50712874 + 50712854 50712894 41 CACTTGTGAAACAGAGTTTCCAGCCAAAGCAGTAGGAGAAC CACTTGTGAAACAGAGTTTCCAGCAAAAGCAGTAGGAGAAC < 41bp 0.331780181724261 0.745554560458626 0.16055775 0.16798252 prediction 0.491109120917252 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50712874 chr6:50712878 synonymous SNV . 0 25 hm5C_associated_SNPs_109543 0 0 0 0 2 TFAP2D chr6:50712820 3'AG 50712820 Downstream 59bp
chr6 50712878 50712878 1 + C A LUAD 50712874 + 50712854 50712894 41 CACTTGTGAAACAGAGTTTCCAGCCAAAGCAGTAGGAGAAC CACTTGTGAAACAGAGTTTCCAGCAAAAGCAGTAGGAGAAC < 41bp 0.331780181724261 0.745554560458626 0.16055775 0.16798252 prediction 0.491109120917252 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50712874 chr6:50712878 synonymous SNV . 0 25 hm5C_associated_SNPs_109543 0 0 0 0 2 TFAP2D chr6:50712961 5'GT 50712961 Upstream 84bp
chr16 14983027 14983027 1 + C A COAD 14983026 + 14983006 14983046 41 CTTGCCTCAAGTTTCTTTCACCGCAGTGGGCTACCATAAAC CTTGCCTCAAGTTTCTTTCACAGCAGTGGGCTACCATAAAC < 41bp 0.515568794708624 0.761122066657217 0.17194134 0.28296316 prediction 0.491106543897186 Functional Gain - NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14983026 chr16:14983027 synonymous SNV . 0 22 hm5C_associated_SNPs_109544 0 0 1 0 2 NOMO1 chr16:14982953 3'AG 14982953 Downstream 75bp
chr16 14983027 14983027 1 + C A COAD 14983026 + 14983006 14983046 41 CTTGCCTCAAGTTTCTTTCACCGCAGTGGGCTACCATAAAC CTTGCCTCAAGTTTCTTTCACAGCAGTGGGCTACCATAAAC < 41bp 0.515568794708624 0.761122066657217 0.17194134 0.28296316 prediction 0.491106543897186 Functional Gain - NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14983026 chr16:14983027 synonymous SNV . 0 22 hm5C_associated_SNPs_109544 0 0 1 0 2 NOMO1 chr16:14983072 5'GT 14983072 Upstream 46bp
chr3 47453658 47453658 1 + C G SKCM 47453654 + 47453634 47453674 41 ACGCACATTACCTGCATCAGCGGCCGCTGCACACGCCCATC ACGCACATTACCTGCATCAGCGGCGGCTGCACACGCCCATC < 41bp 0.452593223844846 0.745534094223768 0.43806025 0.89914656 prediction 0.491068188447535 Functional Gain - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47453654 chr3:47453658 nonsynonymous SNV 0.828 3 25 hm5C_associated_SNPs_109546 0 0 0 0 2 PTPN23 chr3:47453584 3'AG 47453584 Downstream 75bp
chr3 47453658 47453658 1 + C G SKCM 47453654 + 47453634 47453674 41 ACGCACATTACCTGCATCAGCGGCCGCTGCACACGCCCATC ACGCACATTACCTGCATCAGCGGCGGCTGCACACGCCCATC < 41bp 0.452593223844846 0.745534094223768 0.43806025 0.89914656 prediction 0.491068188447535 Functional Gain - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47453654 chr3:47453658 nonsynonymous SNV 0.828 3 25 hm5C_associated_SNPs_109546 0 0 0 0 2 PTPN23 chr3:47453688 5'GT 47453688 Upstream 31bp
chr11 209947 209947 1 + C A UCS 209946 + 209926 209966 41 ACTGAGCGGGCCATGGAGATCCTCAAAGTGCTCTTCAACAT ACTGAGCGGGCCATGGAGATCATCAAAGTGCTCTTCAACAT < 41bp 0.512696081541222 0.758221355618676 0.13697481 0.105982244 prediction 0.49105054815491 Functional Gain - RIC8A ENSG00000177963 CDS Human protein_coding chr11:209946 chr11:209947 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_109549 0 0 1 0 1 RIC8A chr11:210000 5'GT 210000 Upstream 54bp
chr1 67838370 67838370 1 + T C LIHC 67838368 + 67838348 67838388 41 AAAGGGGAGCATTTTAATTTCATGGAACAGCATTCCAGTCC AAAGGGGAGCATTTTAATTTCACGGAACAGCATTCCAGTCC < 41bp 0.530470198347513 0.775994913405361 0.2178419 0.1617063 prediction 0.491049430115695 Functional Gain - IL12RB2 ENSG00000081985 CDS Human protein_coding chr1:67838368 chr1:67838370 nonsynonymous SNV 0.934 5 23 hm5C_associated_SNPs_109550 0 0 0 0 2 IL12RB2 chr1:67838308 3'AG 67838308 Downstream 63bp
chr1 67838370 67838370 1 + T C LIHC 67838368 + 67838348 67838388 41 AAAGGGGAGCATTTTAATTTCATGGAACAGCATTCCAGTCC AAAGGGGAGCATTTTAATTTCACGGAACAGCATTCCAGTCC < 41bp 0.530470198347513 0.775994913405361 0.2178419 0.1617063 prediction 0.491049430115695 Functional Gain - IL12RB2 ENSG00000081985 CDS Human protein_coding chr1:67838368 chr1:67838370 nonsynonymous SNV 0.934 5 23 hm5C_associated_SNPs_109550 0 0 0 0 2 IL12RB2 chr1:67838466 5'GT 67838466 Upstream 97bp
chr21 40871822 40871822 1 + C A SKCM 40871821 + 40871801 40871841 41 GTGAAGATGTGGGCAACCTCCCTGAAGCCCAGGAGAAGAAT GTGAAGATGTGGGCAACCTCCATGAAGCCCAGGAGAAGAAT < 41bp 0.482903536319533 0.745523483974719 0.07074258 0.13364643 prediction 0.491046967949439 Functional Gain - SH3BGR;WRB-SH3BGR ENSG00000185437 CDS Human protein_coding chr21:40871821 chr21:40871822 nonsynonymous SNV 0.009 0 22 hm5C_associated_SNPs_109551 0 0 1 0 2 SH3BGR;WRB-SH3BGR chr21:40871749 3'AG 40871749 Downstream 74bp
chr21 40871822 40871822 1 + C A SKCM 40871821 + 40871801 40871841 41 GTGAAGATGTGGGCAACCTCCCTGAAGCCCAGGAGAAGAAT GTGAAGATGTGGGCAACCTCCATGAAGCCCAGGAGAAGAAT < 41bp 0.482903536319533 0.745523483974719 0.07074258 0.13364643 prediction 0.491046967949439 Functional Gain - SH3BGR;WRB-SH3BGR ENSG00000185437 CDS Human protein_coding chr21:40871821 chr21:40871822 nonsynonymous SNV 0.009 0 22 hm5C_associated_SNPs_109551 0 0 1 0 2 SH3BGR;WRB-SH3BGR chr21:40871841 5'GT 40871841 Upstream 20bp
chr19 7570891 7570891 1 + T C LIHC 7570889 + 7570869 7570909 41 CACCCAGCCGCCACGTGCCTCATGAGAAATTGCAGAGTCAT CACCCAGCCGCCACGTGCCTCACGAGAAATTGCAGAGTCAT < 41bp 0.54487905957764 0.790384441038435 0.37569565 0.49112147 prediction 0.49101076292159 Functional Gain - TEX45 ENSG00000198723 CDS Human protein_coding chr19:7570889 chr19:7570891 synonymous SNV . 0 23 hm5C_associated_SNPs_109553 0 0 0 0 1 TEX45 chr19:7570850 3'AG 7570850 Downstream 42bp
chr16 53860348 53860348 1 + T C rs146138389 53860346 + 53860326 53860366 41 AAATGGCAGTGAGCTGGCATCATGATGAAAATCTGGTGGAC AAATGGCAGTGAGCTGGCATCACGATGAAAATCTGGTGGAC < 41bp 0.556631680407281 0.802136282760736 0.5086631 0.73951876 prediction 0.49100920470691 Functional Gain - FTO ENSG00000140718 CDS Human protein_coding chr16:53860346 chr16:53860348 synonymous SNV . 0 23 hm5C_associated_SNPs_109554 0 0 1 0 1 FTO chr16:53860403 5'GT 53860403 Upstream 56bp
chr19 56390297 56390297 1 + T G COAD 56390295 + 56390275 56390315 41 GTGGTTGTACTCTGTGAGGCCCTGAGACACCCAGAGTGTGC GTGGTTGTACTCTGTGAGGCCCGGAGACACCCAGAGTGTGC < 41bp 0.403654824892209 0.745503524459359 0.14675534 0.58209664 prediction 0.491007048918719 Functional Gain - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56390295 chr19:56390297 nonsynonymous SNV 0.161 3 23 hm5C_associated_SNPs_109556 0 0 0 0 1 NLRP4 chr19:56390330 5'GT 56390330 Upstream 34bp
chr10 135279752 135279752 1 + C G rs7894325 135279748 + 135279728 135279768 41 TCCTTTCTCAGAGCCTGGCCCAGGCCCCCCACTGCCTGCAG TCCTTTCTCAGAGCCTGGCCCAGGGCCCCCACTGCCTGCAG < 41bp 0.442596598673161 0.74550229791451 0.860073 0.9364861 prediction 0.49100459582902 Functional Gain - SCART1 ENSG00000214279 ncRNA_exonic Human protein_coding chr10:135279748 chr10:135279752 . . 0 25 hm5C_associated_SNPs_109557 0 0 1 0 1 SCART1 chr10:135279739 3'AG 135279739 Downstream 14bp
chr20 32346608 32346608 1 + C T ESCA 32346607 + 32346587 32346627 41 TTTGACCTGCAGCAGCACATCCGAAGGTACACATGCGTGGT TTTGACCTGCAGCAGCACATCTGAAGGTACACATGCGTGGT < 41bp 0.521890637856677 0.767391468107069 0.17659837 0.17833391 prediction 0.491001660500785 Functional Gain - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32346607 chr20:32346608 stopgain 0.997 1 22 hm5C_associated_SNPs_109558 0 0 0 0 2 ZNF341 chr20:32346522 3'AG 32346522 Downstream 87bp
chr20 32346608 32346608 1 + C T ESCA 32346607 + 32346587 32346627 41 TTTGACCTGCAGCAGCACATCCGAAGGTACACATGCGTGGT TTTGACCTGCAGCAGCACATCTGAAGGTACACATGCGTGGT < 41bp 0.521890637856677 0.767391468107069 0.17659837 0.17833391 prediction 0.491001660500785 Functional Gain - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32346607 chr20:32346608 stopgain 0.997 1 22 hm5C_associated_SNPs_109558 0 0 0 0 2 ZNF341 chr20:32346612 5'GT 32346612 Upstream 5bp
chr1 229438699 229438699 1 + C T HNSC 229438698 + 229438678 229438718 41 CACCGCGGCGCGCACAGGCCCCGAACGCTCAGGAGTGTGGT CACCGCGGCGCGCACAGGCCCTGAACGCTCAGGAGTGTGGT < 41bp 0.522327143114709 0.767822529505654 0.089491576 0.124795824 prediction 0.49099077278189 Functional Gain - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229438698 chr1:229438699 nonsynonymous SNV 0.187 1 22 hm5C_associated_SNPs_109561 0 0 1 0 2 RAB4A chr1:229438609 3'AG 229438609 Downstream 91bp
chr1 229438699 229438699 1 + C T HNSC 229438698 + 229438678 229438718 41 CACCGCGGCGCGCACAGGCCCCGAACGCTCAGGAGTGTGGT CACCGCGGCGCGCACAGGCCCTGAACGCTCAGGAGTGTGGT < 41bp 0.522327143114709 0.767822529505654 0.089491576 0.124795824 prediction 0.49099077278189 Functional Gain - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229438698 chr1:229438699 nonsynonymous SNV 0.187 1 22 hm5C_associated_SNPs_109561 0 0 1 0 2 RAB4A chr1:229438736 5'GT 229438736 Upstream 38bp
chr1 36769465 36769465 1 + T C OV 36769463 + 36769443 36769483 41 GCCGGGGCCGAGGAGCCTTTCCTCGGGGTCGGGGCCGGTTC GCCGGGGCCGAGGAGCCTTTCCCCGGGGTCGGGGCCGGTTC < 41bp 0.546637842156748 0.792123892805352 0.18037102 0.17088768 prediction 0.49097210129721 Functional Gain - THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36769463 chr1:36769465 synonymous SNV . 0 23 hm5C_associated_SNPs_109563 0 0 1 0 1 THRAP3 chr1:36769397 3'AG 36769397 Downstream 69bp
chr6 159646610 159646610 1 + T A ACC 159646606 + 159646586 159646626 41 CGAGAGAAGGGGGAATTGGCCAGGTGGGATTATAAGCAGAT CGAGAGAAGGGGGAATTGGCCAGGAGGGATTATAAGCAGAT < 41bp 0.438758819727799 0.745484504942477 0.85854995 0.8040321 prediction 0.490969009884954 Functional Gain - FNDC1 ENSG00000164694 CDS Human protein_coding chr6:159646606 chr6:159646610 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_109564 0 0 0 0 1 FNDC1 chr6:159646567 3'AG 159646567 Downstream 44bp
chr3 120315375 120315375 1 + C G BLCA 120315371 + 120315351 120315391 41 CTTCAGTACAACGATCCCAACCGCCGAGGGCTCATCGTGAG CTTCAGTACAACGATCCCAACCGCGGAGGGCTCATCGTGAG < 41bp 0.573149558496707 0.818632798285387 0.07890922 0.14762774 prediction 0.49096647957736 Functional Gain - NDUFB4 ENSG00000065518 CDS Human protein_coding chr3:120315371 chr3:120315375 nonsynonymous SNV 0.051 0 25 hm5C_associated_SNPs_109566 0 0 1 0 1 NDUFB4 chr3:120315386 5'GT 120315386 Upstream 12bp
chr6 160221773 160221773 1 + C G SKCM 160221769 + 160221749 160221789 41 GGAGTGCTGGCGATGTTCTGCACCCGAGGACTGCTATTTTT GGAGTGCTGGCGATGTTCTGCACCGGAGGACTGCTATTTTT < 41bp 0.446783646909347 0.745476715105073 0.069155425 0.15322074 prediction 0.490953430210147 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160221769 chr6:160221773 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_109567 0 0 1 0 2 PNLDC1 chr6:160221705 3'AG 160221705 Downstream 69bp
chr6 160221773 160221773 1 + C G SKCM 160221769 + 160221749 160221789 41 GGAGTGCTGGCGATGTTCTGCACCCGAGGACTGCTATTTTT GGAGTGCTGGCGATGTTCTGCACCGGAGGACTGCTATTTTT < 41bp 0.446783646909347 0.745476715105073 0.069155425 0.15322074 prediction 0.490953430210147 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160221769 chr6:160221773 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_109567 0 0 1 0 2 PNLDC1 chr6:160221861 5'GT 160221861 Upstream 89bp
chr1 45275984 45275984 1 + A G UCEC 45275981 + 45275961 45276001 41 TTCTTCCAGCGACTTCTGGGCACAGAGCCAGGCCCCGGGGT TTCTTCCAGCGACTTCTGGGCACGGAGCCAGGCCCCGGGGT < 41bp 0.517374416436711 0.76285055333908 0.09720591 0.14438653 prediction 0.490952273804739 Functional Gain - BTBD19 ENSG00000222009 CDS Human protein_coding chr1:45275981 chr1:45275984 synonymous SNV . 0 24 hm5C_associated_SNPs_109569 0 0 0 0 1 BTBD19 chr1:45275885 3'AG 45275885 Downstream 100bp
chr10 115481466 115481466 1 + C T UCEC 115481465 + 115481445 115481485 41 GAGGCGCTCTTCAAGTGCTTCCGAAGCCTGGGTTTTGACGT GAGGCGCTCTTCAAGTGCTTCTGAAGCCTGGGTTTTGACGT < 41bp 0.488418075155429 0.74547551966591 0.28668213 0.17201719 prediction 0.490951039331819 Functional Gain - CASP7 ENSG00000165806 CDS Human protein_coding chr10:115481465 chr10:115481466 stopgain 0.640 1 22 hm5C_associated_SNPs_109570 0 0 0 0 2 CASP7 chr10:115481410 3'AG 115481410 Downstream 57bp
chr10 115481466 115481466 1 + C T UCEC 115481465 + 115481445 115481485 41 GAGGCGCTCTTCAAGTGCTTCCGAAGCCTGGGTTTTGACGT GAGGCGCTCTTCAAGTGCTTCTGAAGCCTGGGTTTTGACGT < 41bp 0.488418075155429 0.74547551966591 0.28668213 0.17201719 prediction 0.490951039331819 Functional Gain - CASP7 ENSG00000165806 CDS Human protein_coding chr10:115481465 chr10:115481466 stopgain 0.640 1 22 hm5C_associated_SNPs_109570 0 0 0 0 2 CASP7 chr10:115481538 5'GT 115481538 Upstream 73bp
chr12 104153016 104153016 1 + C A THCA 104153012 + 104152992 104153032 41 CTGCAAACGAGGCTGGGAAGCAAGCTGCTCATCACTGCCAG CTGCAAACGAGGCTGGGAAGCAAGATGCTCATCACTGCCAG < 41bp 0.373832417279544 0.745472690918068 0.5143787 0.7791357 prediction 0.490945381836136 Functional Gain - STAB2 ENSG00000136011 CDS Human protein_coding chr12:104153012 chr12:104153016 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_109571 0 0 0 1 1 STAB2 chr12:104153051 5'GT 104153051 Upstream 36bp
chr4 187130329 187130329 1 + C T UCEC 187130328 + 187130308 187130348 41 TCCGAGATACTTCCCCAACCCCGAGGAGTTCCAGCCTGAGC TCCGAGATACTTCCCCAACCCTGAGGAGTTCCAGCCTGAGC < 41bp 0.508443284947059 0.75389727399134 0.019858241 0.019753128 prediction 0.490907978088563 Functional Gain - CYP4V2 ENSG00000145476;ENSG00000164344 CDS Human other chr4:187130328 chr4:187130329 synonymous SNV . 0 22 hm5C_associated_SNPs_109573 0 0 1 0 2 CYP4V2 chr4:187130247 3'AG 187130247 Downstream 83bp
chr4 187130329 187130329 1 + C T UCEC 187130328 + 187130308 187130348 41 TCCGAGATACTTCCCCAACCCCGAGGAGTTCCAGCCTGAGC TCCGAGATACTTCCCCAACCCTGAGGAGTTCCAGCCTGAGC < 41bp 0.508443284947059 0.75389727399134 0.019858241 0.019753128 prediction 0.490907978088563 Functional Gain - CYP4V2 ENSG00000145476;ENSG00000164344 CDS Human other chr4:187130328 chr4:187130329 synonymous SNV . 0 22 hm5C_associated_SNPs_109573 0 0 1 0 2 CYP4V2 chr4:187130426 5'GT 187130426 Upstream 98bp
chr16 2287780 2287780 1 + C A UCEC 2287779 + 2287759 2287799 41 CGCCCGCAGGACATGCTGTTCCTGGGCGACTTCAACGCCGA CGCCCGCAGGACATGCTGTTCATGGGCGACTTCAACGCCGA < 41bp 0.530569421998734 0.776019447711081 0.108709306 0.33662355 prediction 0.490900051424693 Functional Gain - DNASE1L2 ENSG00000167968 CDS Human protein_coding chr16:2287779 chr16:2287780 nonsynonymous SNV 0.928 2 22 hm5C_associated_SNPs_109575 0 0 0 0 1 DNASE1L2 chr16:2287768 3'AG 2287768 Downstream 13bp
chr1 236706943 236706943 1 + C G MESO 236706942 + 236706922 236706962 41 AGGAGAAGTGAATGCAAATGCCAAAAGGTCAGTATCCTTCG AGGAGAAGTGAATGCAAATGCGAAAAGGTCAGTATCCTTCG < 41bp 0.443817091424521 0.745436518358378 0.05736813 0.14706904 prediction 0.490873036716756 Functional Gain - LGALS8 ENSG00000116977 CDS Human protein_coding chr1:236706942 chr1:236706943 synonymous SNV . 0 22 hm5C_associated_SNPs_109579 0 0 0 1 2 LGALS8 chr1:236706860 3'AG 236706860 Downstream 84bp
chr1 236706943 236706943 1 + C G MESO 236706942 + 236706922 236706962 41 AGGAGAAGTGAATGCAAATGCCAAAAGGTCAGTATCCTTCG AGGAGAAGTGAATGCAAATGCGAAAAGGTCAGTATCCTTCG < 41bp 0.443817091424521 0.745436518358378 0.05736813 0.14706904 prediction 0.490873036716756 Functional Gain - LGALS8 ENSG00000116977 CDS Human protein_coding chr1:236706942 chr1:236706943 synonymous SNV . 0 22 hm5C_associated_SNPs_109579 0 0 0 1 2 LGALS8 chr1:236706948 5'GT 236706948 Upstream 6bp
chr2 242157692 242157692 1 + C A rs199499943 242157688 + 242157668 242157708 41 CTTCTCGTCCGACTTCCTGCCGCGCGCCTACTACCGGTGGA CTTCTCGTCCGACTTCCTGCCGCGAGCCTACTACCGGTGGA < 41bp 0.677488714955387 0.922922783440533 0.5876017 0.858636 prediction 0.490868136970293 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242157688 chr2:242157692 synonymous SNV . 0 25 hm5C_associated_SNPs_109580 0 0 1 0 1 ANO7 chr2:242157654 3'AG 242157654 Downstream 39bp
chr16 67859686 67859686 1 + C T UCEC 67859685 + 67859665 67859705 41 GCCAACTTTGGAGATGTGGTCCCCAGGAGGGACTTTGAAAT GCCAACTTTGGAGATGTGGTCTCCAGGAGGGACTTTGAAAT < 41bp 0.550874408183035 0.796308171938621 0.20784888 0.924555 prediction 0.490867527511172 Functional Gain - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67859685 chr16:67859686 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_109581 0 0 0 0 1 TSNAXIP1 chr16:67859739 5'GT 67859739 Upstream 54bp
chr13 113817331 113817331 1 + C G rs372086805 113817330 + 113817310 113817350 41 CCTCCTCCTGCAGGCGGCTCCCCGTGCATCTCCCAGCCCTG CCTCCTCCTGCAGGCGGCTCCGCGTGCATCTCCCAGCCCTG < 41bp 0.61998309382763 0.865403204137916 0.81643784 0.91925395 prediction 0.490840220620571 Functional Gain - PROZ ENSG00000126231 CDS Human protein_coding chr13:113817330 chr13:113817331 nonsynonymous SNV 0.760 1 22 hm5C_associated_SNPs_109583 0 0 1 0 1 PROZ chr13:113817323 3'AG 113817323 Downstream 9bp
chr22 32439311 32439311 1 + C A LUAD 32439310 + 32439290 32439330 41 CCCAAGACCACCGCGGTCACCCGGCCTGTTGAGACCCACGA CCCAAGACCACCGCGGTCACCAGGCCTGTTGAGACCCACGA < 41bp 0.530790877871948 0.77618183884054 0.39760214 0.85154843 prediction 0.490781921937185 Functional Gain - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32439310 chr22:32439311 synonymous SNV . 0 22 hm5C_associated_SNPs_109588 0 0 0 0 1 SLC5A1 chr22:32439403 5'GT 32439403 Upstream 93bp
chr11 67160217 67160217 1 + T G LUSC 67160214 + 67160194 67160234 41 CAGCAATACCAGGCAGCCACCCCTGGTCAGGACCTGCTGCG CAGCAATACCAGGCAGCCACCCCGGGTCAGGACCTGCTGCG < 41bp 0.346622337898733 0.745390894308665 0.10218197 0.7785392 prediction 0.490781788617331 Functional Gain - RAD9A ENSG00000172613 CDS Human protein_coding chr11:67160214 chr11:67160217 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_109589 0 0 1 0 2 RAD9A chr11:67160125 3'AG 67160125 Downstream 93bp
chr11 67160217 67160217 1 + T G LUSC 67160214 + 67160194 67160234 41 CAGCAATACCAGGCAGCCACCCCTGGTCAGGACCTGCTGCG CAGCAATACCAGGCAGCCACCCCGGGTCAGGACCTGCTGCG < 41bp 0.346622337898733 0.745390894308665 0.10218197 0.7785392 prediction 0.490781788617331 Functional Gain - RAD9A ENSG00000172613 CDS Human protein_coding chr11:67160214 chr11:67160217 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_109589 0 0 1 0 2 RAD9A chr11:67160253 5'GT 67160253 Upstream 37bp
chr19 54653316 54653316 1 + C T SKCM 54653315 + 54653295 54653335 41 GAAGGAACCCAGTGCGGCAGCCCCAACGGGGGCTGGGGGCG GAAGGAACCCAGTGCGGCAGCTCCAACGGGGGCTGGGGGCG < 41bp 0.551692863399899 0.797065580676379 0.21893069 0.935643 prediction 0.49074543455296 Functional Gain - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54653315 chr19:54653316 synonymous SNV . 0 22 hm5C_associated_SNPs_109592 0 0 1 0 1 CNOT3 chr19:54653295 3'AG 54653295 Downstream 22bp
chr11 70279272 70279272 1 + C G rs73518300 70279271 + 70279251 70279291 41 GAGTGGGACGGAGCCGGAGCCCGTGTACAGCATGGAGGCCG GAGTGGGACGGAGCCGGAGCCGGTGTACAGCATGGAGGCCG < 41bp 0.429852451060762 0.745356223621354 0.47057736 0.88533545 prediction 0.490712447242707 Functional Gain - CTTN ENSG00000085733 CDS Human protein_coding chr11:70279271 chr11:70279272 synonymous SNV . 0 22 hm5C_associated_SNPs_109595 0 0 1 0 1 CTTN chr11:70279207 3'AG 70279207 Downstream 66bp
chr5 141304203 141304203 1 + C A LIHC 141304202 + 141304182 141304222 41 TGACTCCTAAGTCCACCAGCCCAGATGGGCCTCAGACTACC TGACTCCTAAGTCCACCAGCCAAGATGGGCCTCAGACTACC < 41bp 0.548196358070838 0.793552347670033 0.3201558 0.38243732 prediction 0.490711979198391 Functional Gain - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141304202 chr5:141304203 nonsynonymous SNV 0.566 0 22 hm5C_associated_SNPs_109596 0 0 1 0 2 KIAA0141 chr5:141304146 3'AG 141304146 Downstream 58bp
chr5 141304203 141304203 1 + C A LIHC 141304202 + 141304182 141304222 41 TGACTCCTAAGTCCACCAGCCCAGATGGGCCTCAGACTACC TGACTCCTAAGTCCACCAGCCAAGATGGGCCTCAGACTACC < 41bp 0.548196358070838 0.793552347670033 0.3201558 0.38243732 prediction 0.490711979198391 Functional Gain - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141304202 chr5:141304203 nonsynonymous SNV 0.566 0 22 hm5C_associated_SNPs_109596 0 0 1 0 2 KIAA0141 chr5:141304260 5'GT 141304260 Upstream 58bp
chr7 65557600 65557600 1 + C G OV 65557599 + 65557579 65557619 41 AGCTGTGTTCATGGCCGAGACCAAGGGGGTCGCCCTCAACC AGCTGTGTTCATGGCCGAGACGAAGGGGGTCGCCCTCAACC < 41bp 0.423812234733716 0.745355297344857 0.6870496 0.7391459 prediction 0.490710594689713 Functional Gain - ASL ENSG00000126522;ENSG00000249319 CDS Human other chr7:65557599 chr7:65557600 synonymous SNV . 0 22 hm5C_associated_SNPs_109597 0 0 1 0 2 ASL chr7:65557544 3'AG 65557544 Downstream 57bp
chr7 65557600 65557600 1 + C G OV 65557599 + 65557579 65557619 41 AGCTGTGTTCATGGCCGAGACCAAGGGGGTCGCCCTCAACC AGCTGTGTTCATGGCCGAGACGAAGGGGGTCGCCCTCAACC < 41bp 0.423812234733716 0.745355297344857 0.6870496 0.7391459 prediction 0.490710594689713 Functional Gain - ASL ENSG00000126522;ENSG00000249319 CDS Human other chr7:65557599 chr7:65557600 synonymous SNV . 0 22 hm5C_associated_SNPs_109597 0 0 1 0 2 ASL chr7:65557650 5'GT 65557650 Upstream 51bp
chr19 39871751 39871751 1 + C T UCEC 39871750 + 39871730 39871770 41 AGGCCATTCTCATGTTCCCTCCAGGTGAGGTGCCCCACCCT AGGCCATTCTCATGTTCCCTCTAGGTGAGGTGCCCCACCCT < 41bp 0.499879957157241 0.745353801373637 0.9335889 0.59619343 prediction 0.490707602747274 Functional Gain - SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39871750 chr19:39871751 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_109598 0 0 1 0 1 SAMD4B chr19:39871753 5'GT 39871753 Upstream 3bp
chr3 42226283 42226283 1 + T C UCEC 42226281 + 42226261 42226301 41 CTGGAGGAGCAGGTGGAACACATCAGGGAGGAGGTAAGACA CTGGAGGAGCAGGTGGAACACACCAGGGAGGAGGTAAGACA < 41bp 0.573566339201486 0.818919018797408 0.8661664 0.8770004 prediction 0.490705359191844 Functional Gain - TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42226281 chr3:42226283 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_109599 0 0 1 0 1 TRAK1 chr3:42226293 5'GT 42226293 Upstream 11bp
chr14 23944951 23944951 1 + T G rs111774192 23944949 + 23944929 23944969 41 TTTCAGGTGAGAATGACCCACTTCGTTTTAAGCCTCATCCC TTTCAGGTGAGAATGACCCACTGCGTTTTAAGCCTCATCCC < 41bp 0.411464855286113 0.745348854032872 0.028235078 0.08638212 prediction 0.490697708065745 Functional Gain - NGDN ENSG00000129460 CDS Human protein_coding chr14:23944949 chr14:23944951 synonymous SNV . 0 23 hm5C_associated_SNPs_109601 0 0 1 0 2 NGDN chr14:23944935 3'AG 23944935 Downstream 17bp
chr14 23944951 23944951 1 + T G rs111774192 23944949 + 23944929 23944969 41 TTTCAGGTGAGAATGACCCACTTCGTTTTAAGCCTCATCCC TTTCAGGTGAGAATGACCCACTGCGTTTTAAGCCTCATCCC < 41bp 0.411464855286113 0.745348854032872 0.028235078 0.08638212 prediction 0.490697708065745 Functional Gain - NGDN ENSG00000129460 CDS Human protein_coding chr14:23944949 chr14:23944951 synonymous SNV . 0 23 hm5C_associated_SNPs_109601 0 0 1 0 2 NGDN chr14:23944987 5'GT 23944987 Upstream 37bp
chr22 32756807 32756807 1 - G C rs78565810 32756808 - 32756788 32756828 41 AGTGGCGGCTTATTTGGCCTCCCCAGGACGGACTGGAGCAT AGTGGCGGCTTATTTGGCCTCGCCAGGACGGACTGGAGCAT < 41bp 0.610057860926557 0.855398128152078 0.025319338 0.08222476 prediction 0.490680534451041 Functional Gain - RFPL3 ENSG00000128276;ENSG00000205853 CDS Human protein_coding chr22:32756808 chr22:32756807 synonymous SNV . 0 22 hm5C_associated_SNPs_109602 0 0 0 0 1 RFPL3S chr22:32756826 3'AG 32756826 Downstream 20bp
chr11 58715400 58715400 1 + C A HNSC 58715396 + 58715376 58715416 41 ATGGAGGTGCTGGTGGATTCCTGGCCTGAATATCAGATGGT ATGGAGGTGCTGGTGGATTCCTGGACTGAATATCAGATGGT < 41bp 0.673383547568703 0.918709448579405 0.26785004 0.3170848 prediction 0.490651802021405 Functional Gain - GLYATL1 ENSG00000166840 CDS Human protein_coding chr11:58715396 chr11:58715400 nonsynonymous SNV 0.010 3 25 hm5C_associated_SNPs_109608 0 0 0 0 2 GLYATL1 chr11:58715331 3'AG 58715331 Downstream 70bp
chr11 58715400 58715400 1 + C A HNSC 58715396 + 58715376 58715416 41 ATGGAGGTGCTGGTGGATTCCTGGCCTGAATATCAGATGGT ATGGAGGTGCTGGTGGATTCCTGGACTGAATATCAGATGGT < 41bp 0.673383547568703 0.918709448579405 0.26785004 0.3170848 prediction 0.490651802021405 Functional Gain - GLYATL1 ENSG00000166840 CDS Human protein_coding chr11:58715396 chr11:58715400 nonsynonymous SNV 0.010 3 25 hm5C_associated_SNPs_109608 0 0 0 0 2 GLYATL1 chr11:58715438 5'GT 58715438 Upstream 39bp
chr16 28997530 28997530 1 + C T LUSC 28997529 + 28997509 28997549 41 CTGAGCCAGCCAGACCTGCTCCCCATCCCGTGAGTAGCTGC CTGAGCCAGCCAGACCTGCTCTCCATCCCGTGAGTAGCTGC < 41bp 0.539369080477649 0.784692622987285 0.08080503 0.9687289 prediction 0.490647085019272 Functional Gain - LAT ENSG00000213658 CDS Human protein_coding chr16:28997529 chr16:28997530 nonsynonymous SNV 0.979 3 22 hm5C_associated_SNPs_109609 0 0 0 0 2 LAT chr16:28997456 3'AG 28997456 Downstream 75bp
chr16 28997530 28997530 1 + C T LUSC 28997529 + 28997509 28997549 41 CTGAGCCAGCCAGACCTGCTCCCCATCCCGTGAGTAGCTGC CTGAGCCAGCCAGACCTGCTCTCCATCCCGTGAGTAGCTGC < 41bp 0.539369080477649 0.784692622987285 0.08080503 0.9687289 prediction 0.490647085019272 Functional Gain - LAT ENSG00000213658 CDS Human protein_coding chr16:28997529 chr16:28997530 nonsynonymous SNV 0.979 3 22 hm5C_associated_SNPs_109609 0 0 0 0 2 LAT chr16:28997537 5'GT 28997537 Upstream 8bp
chr13 114601811 114601811 1 + C G rs80248962 114601807 + 114601787 114601827 41 CACCACCTGCCCCCCACTCCCGACCAGAGCAGCCGCCGTCC CACCACCTGCCCCCCACTCCCGACGAGAGCAGCCGCCGTCC < 41bp 0.456035998931126 0.745320414561822 0.27291375 0.3811566 prediction 0.490640829123645 Functional Gain - LINC00452 ENSG00000229373 ncRNA_exonic Human lincRNA chr13:114601807 chr13:114601811 . . 0 25 hm5C_associated_SNPs_109611 0 0 0 0 2 LINC00452 chr13:114601738 3'AG 114601738 Downstream 74bp
chr13 114601811 114601811 1 + C G rs80248962 114601807 + 114601787 114601827 41 CACCACCTGCCCCCCACTCCCGACCAGAGCAGCCGCCGTCC CACCACCTGCCCCCCACTCCCGACGAGAGCAGCCGCCGTCC < 41bp 0.456035998931126 0.745320414561822 0.27291375 0.3811566 prediction 0.490640829123645 Functional Gain - LINC00452 ENSG00000229373 ncRNA_exonic Human lincRNA chr13:114601807 chr13:114601811 . . 0 25 hm5C_associated_SNPs_109611 0 0 0 0 2 LINC00452 chr13:114601845 5'GT 114601845 Upstream 35bp
chr5 56509990 56509990 1 + T C STAD 56509988 + 56509968 56510008 41 ATGACTTTGCTCCAGCCTGGCTTAATTTCCCTACTCCACCA ATGACTTTGCTCCAGCCTGGCTCAATTTCCCTACTCCACCA < 41bp 0.45741587055692 0.74531684886312 0.03176713 0.039856553 prediction 0.490633697726239 Functional Gain - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56509988 chr5:56509990 synonymous SNV . 0 23 hm5C_associated_SNPs_109614 0 0 1 0 1 GPBP1 chr5:56510020 5'GT 56510020 Upstream 31bp
chr8 142441034 142441034 1 + C A LIHC 142441033 + 142441013 142441053 41 TCCCCTCTTCCCAGGAAGCGCCGCGGAGCCATCAACAGCAA TCCCCTCTTCCCAGGAAGCGCAGCGGAGCCATCAACAGCAA < 41bp 0.487124563067176 0.74529524662042 0.38372496 0.530715 prediction 0.49059049324084 Functional Gain - PTP4A3 ENSG00000184489 CDS Human protein_coding chr8:142441033 chr8:142441034 nonsynonymous SNV 0.176 1 22 hm5C_associated_SNPs_109619 0 0 1 0 1 PTP4A3 chr8:142441027 3'AG 142441027 Downstream 8bp
chr11 59828682 59828682 1 + C A LUAD 59828681 + 59828661 59828701 41 GAGCTGGGGTCAGCCTCTGCCCATGGTACCCCAGGCAGTGA GAGCTGGGGTCAGCCTCTGCCAATGGTACCCCAGGCAGTGA < 41bp 0.513811098528258 0.759105733151259 0.24666125 0.2742321 prediction 0.490589269246003 Functional Gain - MS4A3 ENSG00000149516 CDS Human protein_coding chr11:59828681 chr11:59828682 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_109620 0 0 1 0 1 MS4A3 chr11:59828619 3'AG 59828619 Downstream 64bp
chr15 45454088 45454088 1 + C T SKCM 45454087 + 45454067 45454107 41 GACACGCTTAGCCTGCACATCCGGGCAGCAGGGCCCTGGAC GACACGCTTAGCCTGCACATCTGGGCAGCAGGGCCCTGGAC < 41bp 0.506491337420972 0.751776624671461 0.9182778 0.5300347 prediction 0.490570574500979 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45454087 chr15:45454088 nonsynonymous SNV 0.993 5 22 hm5C_associated_SNPs_109622 0 0 0 0 1 DUOX1 chr15:45454168 5'GT 45454168 Upstream 81bp
chr5 129037260 129037260 1 + T C UCEC 129037258 + 129037238 129037278 41 GAGGGCCAGGACTGCATGACCGTGTGGGAGGCGGGAGTGTG GAGGGCCAGGACTGCATGACCGCGTGGGAGGCGGGAGTGTG < 41bp 0.549687821332852 0.794961114477117 0.6350609 0.78972363 prediction 0.49054658628853 Functional Gain - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:129037258 chr5:129037260 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_109624 0 0 0 0 1 ADAMTS19 chr5:129037285 5'GT 129037285 Upstream 26bp
chr19 17416723 17416723 1 + C A UCEC 17416722 + 17416702 17416742 41 ATGGCTGTCTTGGCTGGATCCCTGTTGGGCCCCACGAGTAG ATGGCTGTCTTGGCTGGATCCATGTTGGGCCCCACGAGTAG < 41bp 0.498951741313612 0.745266364335519 0.028067559 0.22981104 prediction 0.490532728671038 Functional Gain - MRPL34 ENSG00000130312 CDS Human protein_coding chr19:17416722 chr19:17416723 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_109625 0 0 1 0 1 MRPL34 chr19:17416766 5'GT 17416766 Upstream 44bp
chr1 183155482 183155482 1 + C A rs684527 183155478 + 183155458 183155498 41 GAGACAGAGACTGAGCGGCCCGGCCCCGCCATGCCTGCGCT GAGACAGAGACTGAGCGGCCCGGCACCGCCATGCCTGCGCT < 41bp 0.51983956415036 0.765090963431059 0.0675917 0.14405784 prediction 0.490502798561398 Functional Gain - LAMC2 ENSG00000058085 UTR5 Human protein_coding chr1:183155478 chr1:183155482 . . 0 25 hm5C_associated_SNPs_109627 1 1 0 0 1 LAMC2 chr1:183155566 5'GT 183155566 Upstream 85bp
chrX 103041539 103041539 1 + C T SKCM 103041538 + 103041518 103041558 41 ACCACCATCTGCGGCAAGGGCCTGAGCGCAACGGTAACAGG ACCACCATCTGCGGCAAGGGCTTGAGCGCAACGGTAACAGG < 41bp 0.529917202780927 0.775167540077322 0.08159447 0.047324687 prediction 0.490500674592791 Functional Gain - PLP1 ENSG00000123560 CDS Human protein_coding chrX:103041538 chrX:103041539 synonymous SNV . 0 22 hm5C_associated_SNPs_109629 0 0 1 0 1 PLP1 chrX:103041550 5'GT 103041550 Upstream 12bp
chrX 140993285 140993285 1 + A G STAD 140993282 + 140993262 140993302 41 TTGTCCTGAGGGGGAGGACTCCCAGTCTCCTCTCCAGATTC TTGTCCTGAGGGGGAGGACTCCCGGTCTCCTCTCCAGATTC < 41bp 0.524973974968844 0.770212095503323 0.15032417 0.5112003 prediction 0.490476241068958 Functional Gain - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140993282 chrX:140993285 nonsynonymous SNV 0.018 1 24 hm5C_associated_SNPs_109630 0 0 0 0 2 MAGEC1 chrX:140993195 3'AG 140993195 Downstream 91bp
chrX 140993285 140993285 1 + A G STAD 140993282 + 140993262 140993302 41 TTGTCCTGAGGGGGAGGACTCCCAGTCTCCTCTCCAGATTC TTGTCCTGAGGGGGAGGACTCCCGGTCTCCTCTCCAGATTC < 41bp 0.524973974968844 0.770212095503323 0.15032417 0.5112003 prediction 0.490476241068958 Functional Gain - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140993282 chrX:140993285 nonsynonymous SNV 0.018 1 24 hm5C_associated_SNPs_109630 0 0 0 0 2 MAGEC1 chrX:140993333 5'GT 140993333 Upstream 49bp
chr3 14508094 14508094 1 + C T SKCM 14508093 + 14508073 14508113 41 TGGTCCGAGGGCTGACGCTGCCGGGCGCGGGCGCAGGCATC TGGTCCGAGGGCTGACGCTGCTGGGCGCGGGCGCAGGCATC < 41bp 0.499528704685819 0.745226321925108 0.76536083 0.6177913 prediction 0.490452643850217 Functional Gain - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14508093 chr3:14508094 nonsynonymous SNV 0.386 3 22 hm5C_associated_SNPs_109633 0 0 1 0 2 SLC6A6 chr3:14508024 3'AG 14508024 Downstream 71bp
chr3 14508094 14508094 1 + C T SKCM 14508093 + 14508073 14508113 41 TGGTCCGAGGGCTGACGCTGCCGGGCGCGGGCGCAGGCATC TGGTCCGAGGGCTGACGCTGCTGGGCGCGGGCGCAGGCATC < 41bp 0.499528704685819 0.745226321925108 0.76536083 0.6177913 prediction 0.490452643850217 Functional Gain - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14508093 chr3:14508094 nonsynonymous SNV 0.386 3 22 hm5C_associated_SNPs_109633 0 0 1 0 2 SLC6A6 chr3:14508158 5'GT 14508158 Upstream 65bp
chr1 32680512 32680512 1 + C T UCEC 32680511 + 32680491 32680531 41 ATTCAGCCAAGAAGCAAGCTCCCCACACTCTCATTCCCATC ATTCAGCCAAGAAGCAAGCTCTCCACACTCTCATTCCCATC < 41bp 0.533765764088091 0.778989328786911 0.08170834 0.9284532 prediction 0.49044712939764 Functional Gain - DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32680511 chr1:32680512 nonsynonymous SNV 0.110 0 22 hm5C_associated_SNPs_109634 0 0 0 0 1 DCDC2B chr1:32680533 5'GT 32680533 Upstream 22bp
chrX 129543251 129543251 1 + T C UCEC 129543249 + 129543229 129543269 41 AGATATGGGGAGATTGTTAACATTAATCTCGTGCGGGACAA AGATATGGGGAGATTGTTAACACTAATCTCGTGCGGGACAA < 41bp 0.46988084485503 0.745219270875076 0.19876876 0.16271675 prediction 0.490438541750153 Functional Gain - RBMX2 ENSG00000134597 CDS Human protein_coding chrX:129543249 chrX:129543251 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_109635 0 0 1 0 1 RBMX2 chrX:129543231 3'AG 129543231 Downstream 21bp
chr17 72739332 72739332 1 + A G UCEC 72739329 + 72739309 72739349 41 CCATGCTTATTACAGAGATGCTCAGGGTGAGTCCCTCGCAC CCATGCTTATTACAGAGATGCTCGGGGTGAGTCCCTCGCAC < 41bp 0.503547171967067 0.748755039471392 0.3179237 0.7119843 prediction 0.49041573500865 Functional Gain - RAB37 ENSG00000172794 CDS Human protein_coding chr17:72739329 chr17:72739332 nonsynonymous SNV 0.966 1 24 hm5C_associated_SNPs_109636 0 0 0 0 1 RAB37 chr17:72739268 3'AG 72739268 Downstream 65bp
chr4 1742708 1742708 1 + C T COAD 1742707 + 1742687 1742727 41 AAAGAGGTGATCGAGGGCTACCGCAAGGTATGTCTCCGCCA AAAGAGGTGATCGAGGGCTACTGCAAGGTATGTCTCCGCCA < 41bp 0.527314054753737 0.772518937430979 0.29472792 0.5031411 prediction 0.490409765354485 Functional Gain - TACC3 ENSG00000013810 CDS Human protein_coding chr4:1742707 chr4:1742708 nonsynonymous SNV 0.204 2 22 hm5C_associated_SNPs_109638 0 0 1 0 1 TACC3 chr4:1742713 5'GT 1742713 Upstream 6bp
chr19 4428843 4428843 1 + C T BRCA 4428842 + 4428822 4428862 41 AGGCCGGCAGCCCCTGAGGTCCGGACCCACGCACGTTTCCA AGGCCGGCAGCCCCTGAGGTCTGGACCCACGCACGTTTCCA < 41bp 0.511721605652858 0.75692041290004 0.2219364 0.11724505 prediction 0.490397614494364 Functional Gain - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4428842 chr19:4428843 synonymous SNV . 0 22 hm5C_associated_SNPs_109639 0 0 1 0 1 CHAF1A chr19:4428887 5'GT 4428887 Upstream 45bp
chr7 75511505 75511505 1 + C T LUAD 75511504 + 75511484 75511524 41 GGGTGCCTCGTGGCTCATTCCCCAGACCTCTTTCCTCAGTA GGGTGCCTCGTGGCTCATTCCTCAGACCTCTTTCCTCAGTA < 41bp 0.52497343394158 0.770162795929677 0.06491053 0.1428423 prediction 0.490378723976192 Functional Gain - RHBDD2 ENSG00000005486 CDS Human protein_coding chr7:75511504 chr7:75511505 synonymous SNV . 0 22 hm5C_associated_SNPs_109641 0 0 1 0 1 RHBDD2 chr7:75511554 5'GT 75511554 Upstream 50bp
chr15 90814499 90814499 1 + C A SKCM 90814498 + 90814478 90814518 41 GATGTCAGCACTGATGTGATCCGAAGAGTTTTAAAAAGCAA GATGTCAGCACTGATGTGATCAGAAGAGTTTTAAAAAGCAA < 41bp 0.504611705293839 0.749790336546788 0.24463946 0.8212702 prediction 0.490357262505897 Functional Gain - NGRN ENSG00000182768 CDS Human protein_coding chr15:90814498 chr15:90814499 synonymous SNV . 0 22 hm5C_associated_SNPs_109642 0 0 1 0 1 NGRN chr15:90814420 3'AG 90814420 Downstream 80bp
chr16 55361281 55361281 1 + C T COAD 55361280 + 55361260 55361300 41 CACAACCAGGAGCCTATTATCCCTATGAGCGGACTCTGGGG CACAACCAGGAGCCTATTATCTCTATGAGCGGACTCTGGGG < 41bp 0.548939658608075 0.79410886714402 0.33703238 0.9595953 prediction 0.490338417071891 Functional Gain - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55361280 chr16:55361281 nonsynonymous SNV 0.992 2 22 hm5C_associated_SNPs_109644 0 0 0 0 2 IRX6 chr16:55361208 3'AG 55361208 Downstream 74bp
chr16 55361281 55361281 1 + C T COAD 55361280 + 55361260 55361300 41 CACAACCAGGAGCCTATTATCCCTATGAGCGGACTCTGGGG CACAACCAGGAGCCTATTATCTCTATGAGCGGACTCTGGGG < 41bp 0.548939658608075 0.79410886714402 0.33703238 0.9595953 prediction 0.490338417071891 Functional Gain - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55361280 chr16:55361281 nonsynonymous SNV 0.992 2 22 hm5C_associated_SNPs_109644 0 0 0 0 2 IRX6 chr16:55361317 5'GT 55361317 Upstream 37bp
chr19 46173932 46173932 1 + C A LUAD 46173928 + 46173908 46173948 41 CAGACGGCGGGGGAGCTGTACCAGCGCTGGGAACGGTACCG CAGACGGCGGGGGAGCTGTACCAGAGCTGGGAACGGTACCG < 41bp 0.336767672116087 0.745168610884893 0.6135409 0.76240224 prediction 0.490337221769787 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46173928 chr19:46173932 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_109645 0 0 1 0 2 GIPR chr19:46173893 3'AG 46173893 Downstream 40bp
chr19 46173932 46173932 1 + C A LUAD 46173928 + 46173908 46173948 41 CAGACGGCGGGGGAGCTGTACCAGCGCTGGGAACGGTACCG CAGACGGCGGGGGAGCTGTACCAGAGCTGGGAACGGTACCG < 41bp 0.336767672116087 0.745168610884893 0.6135409 0.76240224 prediction 0.490337221769787 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46173928 chr19:46173932 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_109645 0 0 1 0 2 GIPR chr19:46173992 5'GT 46173992 Upstream 61bp
chr5 148695844 148695844 1 + C A OV 148695843 + 148695823 148695863 41 TGACCTGCAGACGTCCTCCACCGAGGAGGAGGTTCCCTGCT TGACCTGCAGACGTCCTCCACAGAGGAGGAGGTTCCCTGCT < 41bp 0.54948998797776 0.794644490309654 0.3376143 0.3195758 prediction 0.490309004663789 Functional Gain - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148695843 chr5:148695844 synonymous SNV . 0 22 hm5C_associated_SNPs_109648 0 0 0 0 1 AFAP1L1 chr5:148695866 5'GT 148695866 Upstream 23bp
chr3 138189766 138189766 1 + C G rs181864431 138189765 + 138189745 138189785 41 TCTGGGAATGCTGGAGGTCCCCCTGTGCCAGATCCTCCCCT TCTGGGAATGCTGGAGGTCCCGCTGTGCCAGATCCTCCCCT < 41bp 0.421163614984572 0.745153876854863 0.1481469 0.22398525 prediction 0.490307753709726 Functional Gain - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138189765 chr3:138189766 synonymous SNV . 0 22 hm5C_associated_SNPs_109649 0 0 0 0 1 ESYT3 chr3:138189719 3'AG 138189719 Downstream 48bp
chr7 6193464 6193464 1 + T G rs61732616 6193462 + 6193442 6193482 41 GGCAGCCCCGCCGCCGAATCCCTGGAGGAGCCAGATGCGGC GGCAGCCCCGCCGCCGAATCCCGGGAGGAGCCAGATGCGGC < 41bp 0.393991348973215 0.745152252484552 0.41738546 0.91602147 prediction 0.490304504969104 Functional Gain - USP42 ENSG00000106346 CDS Human protein_coding chr7:6193462 chr7:6193464 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_109650 0 0 1 0 1 USP42 chr7:6193387 3'AG 6193387 Downstream 78bp
chr3 16261510 16261510 1 + C A LUAD 16261506 + 16261486 16261526 41 GTGTTGGCTCCTTGCAGTGACAGCCGGCAGCAACAGGTGGG GTGTTGGCTCCTTGCAGTGACAGCAGGCAGCAACAGGTGGG < 41bp 0.333690353698956 0.74514358651163 0.16190204 0.45622253 prediction 0.49028717302326 Functional Gain - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16261506 chr3:16261510 synonymous SNV . 0 25 hm5C_associated_SNPs_109651 0 0 0 0 2 GALNT15 chr3:16261417 3'AG 16261417 Downstream 94bp
chr3 16261510 16261510 1 + C A LUAD 16261506 + 16261486 16261526 41 GTGTTGGCTCCTTGCAGTGACAGCCGGCAGCAACAGGTGGG GTGTTGGCTCCTTGCAGTGACAGCAGGCAGCAACAGGTGGG < 41bp 0.333690353698956 0.74514358651163 0.16190204 0.45622253 prediction 0.49028717302326 Functional Gain - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16261506 chr3:16261510 synonymous SNV . 0 25 hm5C_associated_SNPs_109651 0 0 0 0 2 GALNT15 chr3:16261521 5'GT 16261521 Upstream 12bp
chr11 60688429 60688429 1 + C T ESCA 60688428 + 60688408 60688448 41 CTTTGCTCTGTCTGGGATCGCCGCACAGCTGCTGAATGCCT CTTTGCTCTGTCTGGGATCGCTGCACAGCTGCTGAATGCCT < 41bp 0.5156058384803 0.760742730414049 0.4468096 0.13276392 prediction 0.490273783867499 Functional Gain - TMEM109 ENSG00000110108 CDS Human protein_coding chr11:60688428 chr11:60688429 synonymous SNV . 0 22 hm5C_associated_SNPs_109652 0 0 1 0 2 TMEM109 chr11:60688358 3'AG 60688358 Downstream 72bp
chr11 60688429 60688429 1 + C T ESCA 60688428 + 60688408 60688448 41 CTTTGCTCTGTCTGGGATCGCCGCACAGCTGCTGAATGCCT CTTTGCTCTGTCTGGGATCGCTGCACAGCTGCTGAATGCCT < 41bp 0.5156058384803 0.760742730414049 0.4468096 0.13276392 prediction 0.490273783867499 Functional Gain - TMEM109 ENSG00000110108 CDS Human protein_coding chr11:60688428 chr11:60688429 synonymous SNV . 0 22 hm5C_associated_SNPs_109652 0 0 1 0 2 TMEM109 chr11:60688460 5'GT 60688460 Upstream 32bp
chr11 20657893 20657893 1 + C G LUSC 20657892 + 20657872 20657912 41 GGTTTACCCGGAAGCCTTAACCAGGCTGCCTCTCTCTCCGT GGTTTACCCGGAAGCCTTAACGAGGCTGCCTCTCTCTCCGT < 41bp 0.628635560132852 0.873772210616753 0.92101836 0.9357474 prediction 0.490273300967802 Functional Gain - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20657892 chr11:20657893 synonymous SNV . 0 22 hm5C_associated_SNPs_109653 0 0 0 0 2 SLC6A5 chr11:20657853 3'AG 20657853 Downstream 41bp
chr11 20657893 20657893 1 + C G LUSC 20657892 + 20657872 20657912 41 GGTTTACCCGGAAGCCTTAACCAGGCTGCCTCTCTCTCCGT GGTTTACCCGGAAGCCTTAACGAGGCTGCCTCTCTCTCCGT < 41bp 0.628635560132852 0.873772210616753 0.92101836 0.9357474 prediction 0.490273300967802 Functional Gain - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20657892 chr11:20657893 synonymous SNV . 0 22 hm5C_associated_SNPs_109653 0 0 0 0 2 SLC6A5 chr11:20657965 5'GT 20657965 Upstream 73bp
chr5 179251050 179251050 1 + A G BRCA 179251047 + 179251027 179251067 41 GGGCTTGCACCGGGGGCACACCAAGCTCGCATTCCCCAGCC GGGCTTGCACCGGGGGCACACCAGGCTCGCATTCCCCAGCC < 41bp 0.521155922109182 0.766292192410804 0.93094754 0.9450236 prediction 0.490272540603244 Functional Gain - SQSTM1 ENSG00000161011 CDS Human protein_coding chr5:179251047 chr5:179251050 nonsynonymous SNV 0.044 2 24 hm5C_associated_SNPs_109654 0 0 1 0 1 SQSTM1 chr5:179251087 5'GT 179251087 Upstream 38bp
chr17 38122138 38122138 1 + C A rs188841005 38122137 + 38122117 38122157 41 GCTGCTGGATGTGCTTGAGCCCGGCAGCTCACCTTCAGGTC GCTGCTGGATGTGCTTGAGCCAGGCAGCTCACCTTCAGGTC < 41bp 0.548411438434732 0.793545234894269 0.3268929 0.8334036 prediction 0.490267592919074 Functional Gain - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38122137 chr17:38122138 synonymous SNV . 0 22 hm5C_associated_SNPs_109655 0 0 0 0 1 GSDMA chr17:38122154 5'GT 38122154 Upstream 17bp
chr19 36349612 36349612 1 + C T UCEC 36349611 + 36349591 36349631 41 AAATCCACCTTGCAGTCCCCCCAGAAGCCCCCCAGGTGCTG AAATCCACCTTGCAGTCCCCCTAGAAGCCCCCCAGGTGCTG < 41bp 0.489782013547572 0.745126469900075 0.030325204 0.0370968 prediction 0.490252939800151 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36349611 chr19:36349612 nonsynonymous SNV 0.873 5 22 hm5C_associated_SNPs_109658 0 0 0 0 1 KIRREL2 chr19:36349606 3'AG 36349606 Downstream 7bp
chrX 70522298 70522298 1 + C A BLCA 70522297 + 70522277 70522317 41 CACACTGTGCTGAGAAGCTTCCTGAGGCCCCTCAACCTGAA CACACTGTGCTGAGAAGCTTCATGAGGCCCCTCAACCTGAA < 41bp 0.485015935309369 0.745126099235852 0.23122957 0.3102103 prediction 0.490252198471704 Functional Gain - ITGB1BP2 ENSG00000147166 CDS Human protein_coding chrX:70522297 chrX:70522298 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_109659 0 0 1 0 1 ITGB1BP2 chrX:70522261 3'AG 70522261 Downstream 38bp
chr22 45939340 45939340 1 + C A CESC 45939336 + 45939316 45939356 41 TGTGGCCACAAGTGCGAGAACACGCTGGGCTCCTACCTCTG TGTGGCCACAAGTGCGAGAACACGATGGGCTCCTACCTCTG < 41bp 0.688700355503097 0.93382088649977 0.5437091 0.80741286 prediction 0.490241061993344 Functional Gain - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45939336 chr22:45939340 nonsynonymous SNV 0.964 2 25 hm5C_associated_SNPs_109660 0 0 1 0 2 FBLN1 chr22:45939281 3'AG 45939281 Downstream 60bp
chr22 45939340 45939340 1 + C A CESC 45939336 + 45939316 45939356 41 TGTGGCCACAAGTGCGAGAACACGCTGGGCTCCTACCTCTG TGTGGCCACAAGTGCGAGAACACGATGGGCTCCTACCTCTG < 41bp 0.688700355503097 0.93382088649977 0.5437091 0.80741286 prediction 0.490241061993344 Functional Gain - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45939336 chr22:45939340 nonsynonymous SNV 0.964 2 25 hm5C_associated_SNPs_109660 0 0 1 0 2 FBLN1 chr22:45939406 5'GT 45939406 Upstream 67bp
chr3 52842192 52842192 1 + C T LUAD 52842191 + 52842171 52842211 41 CAGGCTCTGACCCCACAAAGCCAGATGCCACATTGGTGGTG CAGGCTCTGACCCCACAAAGCTAGATGCCACATTGGTGGTG < 41bp 0.525793493134062 0.770913787172584 0.29002264 0.1701735 prediction 0.490240588077043 Functional Gain - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52842191 chr3:52842192 nonsynonymous SNV 0.993 0 22 hm5C_associated_SNPs_109661 0 0 1 0 2 ITIH3 chr3:52842126 3'AG 52842126 Downstream 67bp
chr3 52842192 52842192 1 + C T LUAD 52842191 + 52842171 52842211 41 CAGGCTCTGACCCCACAAAGCCAGATGCCACATTGGTGGTG CAGGCTCTGACCCCACAAAGCTAGATGCCACATTGGTGGTG < 41bp 0.525793493134062 0.770913787172584 0.29002264 0.1701735 prediction 0.490240588077043 Functional Gain - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52842191 chr3:52842192 nonsynonymous SNV 0.993 0 22 hm5C_associated_SNPs_109661 0 0 1 0 2 ITIH3 chr3:52842237 5'GT 52842237 Upstream 46bp
chr11 61508748 61508748 1 + C T SKCM 61508747 + 61508727 61508767 41 ATCTTCCAGCAGCAGCCACTCCCCACGGGGCCGCCCATGCC ATCTTCCAGCAGCAGCCACTCTCCACGGGGCCGCCCATGCC < 41bp 0.583361753737487 0.828462654878899 0.19718865 0.95236826 prediction 0.490201802282823 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61508747 chr11:61508748 nonsynonymous SNV 0.473 1 22 hm5C_associated_SNPs_109665 0 0 1 0 1 DAGLA chr11:61508821 5'GT 61508821 Upstream 74bp
chr12 29469890 29469890 1 + C T ESCA 29469889 + 29469869 29469909 41 TACTGGAATGCGGTCAGCCACCGGGCCCCTGCCATTATCTA TACTGGAATGCGGTCAGCCACTGGGCCCCTGCCATTATCTA < 41bp 0.504002536204778 0.749073013448457 0.035506576 0.06184861 prediction 0.490140954487357 Functional Gain - FAR2 ENSG00000064763 CDS Human protein_coding chr12:29469889 chr12:29469890 nonsynonymous SNV 0.654 0 22 hm5C_associated_SNPs_109677 0 0 0 0 1 FAR2 chr12:29469945 5'GT 29469945 Upstream 56bp
chr1 154516462 154516462 1 + T C COAD 154516460 + 154516440 154516480 41 GGGTCCTTCCTGGTGCTGCTCCTGAGGGAATGCTTCCGAGA GGGTCCTTCCTGGTGCTGCTCCCGAGGGAATGCTTCCGAGA < 41bp 0.472756900045477 0.745066762543663 0.39326376 0.5563165 prediction 0.490133525087327 Functional Gain - TDRD10 ENSG00000163239 CDS Human protein_coding chr1:154516460 chr1:154516462 nonsynonymous SNV 0.018 1 23 hm5C_associated_SNPs_109679 0 0 0 0 1 TDRD10 chr1:154516439 3'AG 154516439 Downstream 24bp
chr5 176793200 176793200 1 + C A STAD 176793199 + 176793179 176793219 41 GCTGAGCAGCACGACGGGGCCCCAGGGCCAGGGCGAGGGCC GCTGAGCAGCACGACGGGGCCACAGGGCCAGGGCGAGGGCC < 41bp 0.5138344000304 0.75889798517 0.33356643 0.5243256 prediction 0.490127170279199 Functional Gain - RGS14 ENSG00000169220 CDS Human protein_coding chr5:176793199 chr5:176793200 synonymous SNV . 0 22 hm5C_associated_SNPs_109680 0 0 0 0 1 RGS14 chr5:176793178 3'AG 176793178 Downstream 23bp
chr20 2384052 2384052 1 + T C LUAD 2384050 + 2384030 2384070 41 CTCTCTGTGGCAGGAATTTCCATGTCTGGAATGAGAGCTGG CTCTCTGTGGCAGGAATTTCCACGTCTGGAATGAGAGCTGG < 41bp 0.522468141230101 0.767519659795134 0.39493877 0.38782734 prediction 0.490103037130065 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2384050 chr20:2384052 synonymous SNV . 0 23 hm5C_associated_SNPs_109682 0 0 0 0 2 TGM6 chr20:2384043 3'AG 2384043 Downstream 10bp
chr20 2384052 2384052 1 + T C LUAD 2384050 + 2384030 2384070 41 CTCTCTGTGGCAGGAATTTCCATGTCTGGAATGAGAGCTGG CTCTCTGTGGCAGGAATTTCCACGTCTGGAATGAGAGCTGG < 41bp 0.522468141230101 0.767519659795134 0.39493877 0.38782734 prediction 0.490103037130065 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2384050 chr20:2384052 synonymous SNV . 0 23 hm5C_associated_SNPs_109682 0 0 0 0 2 TGM6 chr20:2384146 5'GT 2384146 Upstream 95bp
chr14 24522926 24522926 1 + C A LUSC 24522925 + 24522905 24522945 41 CACCCCCCCTCAGACAGCATCCGGAGGTGCCTGAGCCAAGG CACCCCCCCTCAGACAGCATCAGGAGGTGCCTGAGCCAAGG < 41bp 0.551979062432083 0.79702972182837 0.78402513 0.92558336 prediction 0.490101318792574 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24522925 chr14:24522926 synonymous SNV . 0 22 hm5C_associated_SNPs_109683 0 0 0 0 2 CARMIL3 chr14:24522918 3'AG 24522918 Downstream 9bp
chr14 24522926 24522926 1 + C A LUSC 24522925 + 24522905 24522945 41 CACCCCCCCTCAGACAGCATCCGGAGGTGCCTGAGCCAAGG CACCCCCCCTCAGACAGCATCAGGAGGTGCCTGAGCCAAGG < 41bp 0.551979062432083 0.79702972182837 0.78402513 0.92558336 prediction 0.490101318792574 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24522925 chr14:24522926 synonymous SNV . 0 22 hm5C_associated_SNPs_109683 0 0 0 0 2 CARMIL3 chr14:24523012 5'GT 24523012 Upstream 87bp
chr19 34297899 34297899 1 + C T UCEC 34297898 + 34297878 34297918 41 GGACGTCCAAGCTGCTGCTTCCGGATGACTTTAAGGTAAGT GGACGTCCAAGCTGCTGCTTCTGGATGACTTTAAGGTAAGT < 41bp 0.483792326381866 0.745044641285938 0.6539248 0.3719674 prediction 0.490089282571875 Functional Gain - KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34297898 chr19:34297899 nonsynonymous SNV 0.835 4 22 hm5C_associated_SNPs_109686 0 0 1 0 1 KCTD15 chr19:34297912 5'GT 34297912 Upstream 14bp
chr3 133494394 133494394 1 + C T UCEC 133494393 + 133494373 133494413 41 ACTGCCACCTGGCCAGAGCCCCGAATCACGCTGTGGTCACA ACTGCCACCTGGCCAGAGCCCTGAATCACGCTGTGGTCACA < 41bp 0.54031236804255 0.785356560042644 0.3854819 0.33910772 prediction 0.490088384000188 Functional Gain - TF ENSG00000091513 CDS Human protein_coding chr3:133494393 chr3:133494394 nonsynonymous SNV 0.818 4 22 hm5C_associated_SNPs_109687 0 0 1 0 2 TF chr3:133494391 3'AG 133494391 Downstream 4bp
chr3 133494394 133494394 1 + C T UCEC 133494393 + 133494373 133494413 41 ACTGCCACCTGGCCAGAGCCCCGAATCACGCTGTGGTCACA ACTGCCACCTGGCCAGAGCCCTGAATCACGCTGTGGTCACA < 41bp 0.54031236804255 0.785356560042644 0.3854819 0.33910772 prediction 0.490088384000188 Functional Gain - TF ENSG00000091513 CDS Human protein_coding chr3:133494393 chr3:133494394 nonsynonymous SNV 0.818 4 22 hm5C_associated_SNPs_109687 0 0 1 0 2 TF chr3:133494461 5'GT 133494461 Upstream 68bp
chr16 66886707 66886707 1 + C T rs148412220 66886706 + 66886686 66886726 41 CCCGGGCTCTCTGACGACTCCCCCACTCAGTGAGAGTGTCA CCCGGGCTCTCTGACGACTCCTCCACTCAGTGAGAGTGTCA < 41bp 0.46633966115321 0.745040151412981 0.0147669315 0.60954237 prediction 0.490080302825961 Functional Gain - CA7 ENSG00000168748 CDS Human protein_coding chr16:66886706 chr16:66886707 synonymous SNV . 0 22 hm5C_associated_SNPs_109688 0 0 0 0 2 CA7 chr16:66886615 3'AG 66886615 Downstream 93bp
chr16 66886707 66886707 1 + C T rs148412220 66886706 + 66886686 66886726 41 CCCGGGCTCTCTGACGACTCCCCCACTCAGTGAGAGTGTCA CCCGGGCTCTCTGACGACTCCTCCACTCAGTGAGAGTGTCA < 41bp 0.46633966115321 0.745040151412981 0.0147669315 0.60954237 prediction 0.490080302825961 Functional Gain - CA7 ENSG00000168748 CDS Human protein_coding chr16:66886706 chr16:66886707 synonymous SNV . 0 22 hm5C_associated_SNPs_109688 0 0 0 0 2 CA7 chr16:66886770 5'GT 66886770 Upstream 64bp
chr17 9765381 9765381 1 + C A SKCM 9765380 + 9765360 9765400 41 AAGAAAATCTGGTGGATCATCCGAGGACCCATGATGCTCTG AAGAAAATCTGGTGGATCATCAGAGGACCCATGATGCTCTG < 41bp 0.561635602453929 0.806671724503552 0.4486795 0.90770364 prediction 0.490072244099247 Functional Gain - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9765380 chr17:9765381 synonymous SNV . 0 22 hm5C_associated_SNPs_109690 0 0 0 0 2 GLP2R chr17:9765338 3'AG 9765338 Downstream 44bp
chr17 9765381 9765381 1 + C A SKCM 9765380 + 9765360 9765400 41 AAGAAAATCTGGTGGATCATCCGAGGACCCATGATGCTCTG AAGAAAATCTGGTGGATCATCAGAGGACCCATGATGCTCTG < 41bp 0.561635602453929 0.806671724503552 0.4486795 0.90770364 prediction 0.490072244099247 Functional Gain - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9765380 chr17:9765381 synonymous SNV . 0 22 hm5C_associated_SNPs_109690 0 0 0 0 2 GLP2R chr17:9765407 5'GT 9765407 Upstream 27bp
chr4 88583167 88583167 1 + T A LGG 88583163 + 88583143 88583183 41 GTCAGAGGAGGGCCTGGGCTCTGATGATCATCAATACATTT GTCAGAGGAGGGCCTGGGCTCTGAAGATCATCAATACATTT < 41bp 0.598753607750687 0.843784765100863 0.06628695 0.052449226 prediction 0.490062314700352 Functional Gain - DMP1 ENSG00000152592 CDS Human protein_coding chr4:88583163 chr4:88583167 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_109691 0 0 0 0 1 DMP1 chr4:88583114 3'AG 88583114 Downstream 54bp
chr17 46128984 46128984 1 + C T STAD 46128983 + 46128963 46129003 41 CCCAGTCAGTGGAGACTTAACCAAAGAGGTTAGTGGACCTG CCCAGTCAGTGGAGACTTAACTAAAGAGGTTAGTGGACCTG < 41bp 0.504942565915387 0.749967708121454 0.30368716 0.45807406 prediction 0.490050284412134 Functional Gain - NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128983 chr17:46128984 synonymous SNV . 0 22 hm5C_associated_SNPs_109694 0 0 1 0 1 NFE2L1 chr17:46128990 5'GT 46128990 Upstream 7bp
chrX 51637798 51637798 1 + C T COAD 51637797 + 51637777 51637817 41 ACCCTCCCTCTTTCTGCATTCCCCACTCTGTGCGACCCCCC ACCCTCCCTCTTTCTGCATTCTCCACTCTGTGCGACCCCCC < 41bp 0.523949008101298 0.768964983143218 0.06894624 0.8708457 prediction 0.49003195008384 Functional Gain - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51637797 chrX:51637798 nonsynonymous SNV 0.785 1 22 hm5C_associated_SNPs_109696 0 0 1 0 2 MAGED1 chrX:51637723 3'AG 51637723 Downstream 76bp
chrX 51637798 51637798 1 + C T COAD 51637797 + 51637777 51637817 41 ACCCTCCCTCTTTCTGCATTCCCCACTCTGTGCGACCCCCC ACCCTCCCTCTTTCTGCATTCTCCACTCTGTGCGACCCCCC < 41bp 0.523949008101298 0.768964983143218 0.06894624 0.8708457 prediction 0.49003195008384 Functional Gain - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51637797 chrX:51637798 nonsynonymous SNV 0.785 1 22 hm5C_associated_SNPs_109696 0 0 1 0 2 MAGED1 chrX:51637890 5'GT 51637890 Upstream 93bp
chr5 133479327 133479327 1 + C A LIHC 133479326 + 133479306 133479346 41 GGAAAAGCACCAAGAATCCACCACAGGTGAGACCTTCTCTC GGAAAAGCACCAAGAATCCACAACAGGTGAGACCTTCTCTC < 41bp 0.498471376007338 0.745007365665644 0.12544543 0.2628957 prediction 0.490014731331288 Functional Gain - TCF7 ENSG00000081059 CDS Human protein_coding chr5:133479326 chr5:133479327 synonymous SNV . 0 22 hm5C_associated_SNPs_109701 0 0 0 0 1 TCF7 chr5:133479331 5'GT 133479331 Upstream 5bp
chr5 67522769 67522769 1 + C T SKCM 67522768 + 67522748 67522788 41 TCTCGCCTCCCACACCAAAGCCCCGGCCACCTCGGCCTCTT TCTCGCCTCCCACACCAAAGCTCCGGCCACCTCGGCCTCTT < 41bp 0.485312739852139 0.74500185655276 0.18889529 0.1009199 prediction 0.49000371310552 Functional Gain - PIK3R1 ENSG00000145675 CDS Human protein_coding chr5:67522768 chr5:67522769 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_109702 0 0 1 0 1 PIK3R1 chr5:67522837 5'GT 67522837 Upstream 69bp
chr19 14557241 14557241 1 + C T MESO 14557240 + 14557220 14557260 41 GACTGTCTCTGCCTCCAGGACCGGAAGCTGCTGCTGACAGC GACTGTCTCTGCCTCCAGGACTGGAAGCTGCTGCTGACAGC < 41bp 0.503346986406226 0.748347476044411 0.4015062 0.17312679 prediction 0.490000979276371 Functional Gain - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14557240 chr19:14557241 nonsynonymous SNV 0.989 3 22 hm5C_associated_SNPs_109703 0 0 1 0 1 PKN1 chr19:14557238 3'AG 14557238 Downstream 4bp
chr10 115338424 115338424 1 + C A THCA 115338423 + 115338403 115338443 41 GTTGGCGATGGCTACTCTTACCGAGGGAAAATGAATAGGAC GTTGGCGATGGCTACTCTTACAGAGGGAAAATGAATAGGAC < 41bp 0.476381102160115 0.744996953160288 0.44035137 0.7769047 prediction 0.489993906320576 Functional Gain - HABP2 ENSG00000148702 CDS Human protein_coding chr10:115338423 chr10:115338424 synonymous SNV . 0 22 hm5C_associated_SNPs_109705 0 0 0 0 1 HABP2 chr10:115338386 3'AG 115338386 Downstream 39bp
chr8 22960647 22960647 1 + C T SKCM 22960646 + 22960626 22960666 41 AACCATACCATGGCCCGGATCCCCAAGACCCTAAAGTTCGT AACCATACCATGGCCCGGATCTCCAAGACCCTAAAGTTCGT < 41bp 0.539585638551369 0.784579898816141 0.1818378 0.95361066 prediction 0.489988520529544 Functional Gain - TNFRSF10C ENSG00000173535 CDS Human protein_coding chr8:22960646 chr8:22960647 nonsynonymous SNV 0.004 1 22 hm5C_associated_SNPs_109708 0 0 0 0 1 TNFRSF10C chr8:22960694 5'GT 22960694 Upstream 48bp
chr1 52874248 52874248 1 + C T UCEC 52874247 + 52874227 52874267 41 CATCTGTCTCTCAGGTATGTCCGCATGCTGGGGGCACTTTA CATCTGTCTCTCAGGTATGTCTGCATGCTGGGGGCACTTTA < 41bp 0.514823164592685 0.75980329616448 0.74537957 0.89966863 prediction 0.489960263143589 Functional Gain - PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52874247 chr1:52874248 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_109710 0 0 1 0 1 PRPF38A chr1:52874241 3'AG 52874241 Downstream 8bp
chr19 19335198 19335198 1 + C A UCEC 19335197 + 19335177 19335217 41 GGAGCTATGGGAGGCGCAACCCACAGGAACTCTACGATGTG GGAGCTATGGGAGGCGCAACCAACAGGAACTCTACGATGTG < 41bp 0.545358422922654 0.790334634075883 0.22688776 0.39055818 prediction 0.489952422306457 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19335197 chr19:19335198 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_109711 0 0 0 0 2 NCAN chr19:19335115 3'AG 19335115 Downstream 84bp
chr19 19335198 19335198 1 + C A UCEC 19335197 + 19335177 19335217 41 GGAGCTATGGGAGGCGCAACCCACAGGAACTCTACGATGTG GGAGCTATGGGAGGCGCAACCAACAGGAACTCTACGATGTG < 41bp 0.545358422922654 0.790334634075883 0.22688776 0.39055818 prediction 0.489952422306457 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19335197 chr19:19335198 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_109711 0 0 0 0 2 NCAN chr19:19335242 5'GT 19335242 Upstream 45bp
chr12 111342552 111342552 1 + C T LIHC 111342551 + 111342531 111342571 41 AGAACCCATCAAAGTCATCCCCCCAGTGCTGGGGGCTGACC AGAACCCATCAAAGTCATCCCTCCAGTGCTGGGGGCTGACC < 41bp 0.566772202306201 0.811741913374632 0.042014927 0.93486047 prediction 0.489939422136861 Functional Gain - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111342551 chr12:111342552 synonymous SNV . 0 22 hm5C_associated_SNPs_109714 0 0 0 0 1 CCDC63 chr12:111342595 5'GT 111342595 Upstream 44bp
chr14 100191744 100191744 1 + T C GBM 100191742 + 100191722 100191762 41 CCGCAGTTCAGCACCTATGTCATGGGGCGGATGGACACATA CCGCAGTTCAGCACCTATGTCACGGGGCGGATGGACACATA < 41bp 0.513170442961823 0.758138597041732 0.5514823 0.58552366 prediction 0.48993630815982 Functional Gain - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100191742 chr14:100191744 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_109715 0 0 0 0 2 CYP46A1 chr14:100191728 3'AG 100191728 Downstream 17bp
chr14 100191744 100191744 1 + T C GBM 100191742 + 100191722 100191762 41 CCGCAGTTCAGCACCTATGTCATGGGGCGGATGGACACATA CCGCAGTTCAGCACCTATGTCACGGGGCGGATGGACACATA < 41bp 0.513170442961823 0.758138597041732 0.5514823 0.58552366 prediction 0.48993630815982 Functional Gain - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100191742 chr14:100191744 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_109715 0 0 0 0 2 CYP46A1 chr14:100191816 5'GT 100191816 Upstream 73bp
chr20 45717933 45717933 1 + C G rs201177902 45717929 + 45717909 45717949 41 ACCAGCGAAAGAGGGAGACACAGACAGGCCGCACCGGGCCT ACCAGCGAAAGAGGGAGACACAGAGAGGCCGCACCGGGCCT < 41bp 0.444915679241973 0.744954650595874 0.053435385 0.8189994 prediction 0.489909301191749 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45717929 chr20:45717933 nonsynonymous SNV 0.992 0 25 hm5C_associated_SNPs_109718 0 0 0 0 2 EYA2 chr20:45717878 3'AG 45717878 Downstream 56bp
chr20 45717933 45717933 1 + C G rs201177902 45717929 + 45717909 45717949 41 ACCAGCGAAAGAGGGAGACACAGACAGGCCGCACCGGGCCT ACCAGCGAAAGAGGGAGACACAGAGAGGCCGCACCGGGCCT < 41bp 0.444915679241973 0.744954650595874 0.053435385 0.8189994 prediction 0.489909301191749 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45717929 chr20:45717933 nonsynonymous SNV 0.992 0 25 hm5C_associated_SNPs_109718 0 0 0 0 2 EYA2 chr20:45718020 5'GT 45718020 Upstream 88bp
chr3 186442901 186442901 1 + A G BLCA 186442898 + 186442878 186442918 41 CGAGGGCCCTGTGGTGACAGCCCAGTACGACTGCCTCGGCT CGAGGGCCCTGTGGTGACAGCCCGGTACGACTGCCTCGGCT < 41bp 0.515002132853335 0.759952506675515 0.29456896 0.24534124 prediction 0.489900747644361 Functional Gain - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186442898 chr3:186442901 nonsynonymous SNV 0.072 0 24 hm5C_associated_SNPs_109720 0 0 0 0 1 KNG1 chr3:186442877 3'AG 186442877 Downstream 25bp
chr17 73751197 73751197 1 + C A UCEC 73751196 + 73751176 73751216 41 GCTGTCCTGGGCCCTGGGGTCCCGGAGTCGGGCTCAGATGA GCTGTCCTGGGCCCTGGGGTCACGGAGTCGGGCTCAGATGA < 41bp 0.512825422829923 0.757774993473027 0.9050597 0.9117799 prediction 0.489899141286209 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73751196 chr17:73751197 synonymous SNV . 0 22 hm5C_associated_SNPs_109721 0 0 0 0 2 ITGB4 chr17:73751136 3'AG 73751136 Downstream 62bp
chr17 73751197 73751197 1 + C A UCEC 73751196 + 73751176 73751216 41 GCTGTCCTGGGCCCTGGGGTCCCGGAGTCGGGCTCAGATGA GCTGTCCTGGGCCCTGGGGTCACGGAGTCGGGCTCAGATGA < 41bp 0.512825422829923 0.757774993473027 0.9050597 0.9117799 prediction 0.489899141286209 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73751196 chr17:73751197 synonymous SNV . 0 22 hm5C_associated_SNPs_109721 0 0 0 0 2 ITGB4 chr17:73751294 5'GT 73751294 Upstream 98bp
chr3 38043904 38043904 1 + T C rs9843296 38043902 + 38043882 38043922 41 TATAGGAGAGAGCTGGGCACCATGGAAAGGGGCAGTCAGCA TATAGGAGAGAGCTGGGCACCACGGAAAGGGGCAGTCAGCA < 41bp 0.487862002640659 0.744937772370893 0.13397458 0.19306049 prediction 0.489875544741785 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38043902 chr3:38043904 synonymous SNV . 0 23 hm5C_associated_SNPs_109722 0 0 1 0 1 VILL chr3:38043887 3'AG 38043887 Downstream 18bp
chr3 133475800 133475800 1 + C T COAD 133475799 + 133475779 133475819 41 CCTTCTCATACCGTCGTGGCCCGAAGTATGGGCGGCAAGGA CCTTCTCATACCGTCGTGGCCTGAAGTATGGGCGGCAAGGA < 41bp 0.527360645900119 0.772294975939266 0.2378751 0.2546357 prediction 0.489868660078294 Functional Gain - TF ENSG00000091513 CDS Human protein_coding chr3:133475799 chr3:133475800 stopgain 0.883 1 22 hm5C_associated_SNPs_109726 0 0 1 0 1 TF chr3:133475853 5'GT 133475853 Upstream 54bp
chr19 39689846 39689846 1 + C G rs143457682 39689845 + 39689825 39689865 41 GCAGTGTGTGGACCTTCTGGCCGAGGGCCTGTGGGAGGAGC GCAGTGTGTGGACCTTCTGGCGGAGGGCCTGTGGGAGGAGC < 41bp 0.419159483108431 0.744890042390765 0.56136703 0.8866497 prediction 0.489780084781529 Functional Gain - NCCRP1 ENSG00000188505 CDS Human protein_coding chr19:39689845 chr19:39689846 synonymous SNV . 0 22 hm5C_associated_SNPs_109733 0 0 0 0 2 NCCRP1 chr19:39689810 3'AG 39689810 Downstream 37bp
chr19 39689846 39689846 1 + C G rs143457682 39689845 + 39689825 39689865 41 GCAGTGTGTGGACCTTCTGGCCGAGGGCCTGTGGGAGGAGC GCAGTGTGTGGACCTTCTGGCGGAGGGCCTGTGGGAGGAGC < 41bp 0.419159483108431 0.744890042390765 0.56136703 0.8866497 prediction 0.489780084781529 Functional Gain - NCCRP1 ENSG00000188505 CDS Human protein_coding chr19:39689845 chr19:39689846 synonymous SNV . 0 22 hm5C_associated_SNPs_109733 0 0 0 0 2 NCCRP1 chr19:39689905 5'GT 39689905 Upstream 60bp
chr7 142565466 142565466 1 + C A UCEC 142565462 + 142565442 142565482 41 GGCAGCCATCACCGTGCTGGCGGTCGTCTTCCAGCGGTGAG GGCAGCCATCACCGTGCTGGCGGTAGTCTTCCAGCGGTGAG < 41bp 0.339955986274979 0.744889995197448 0.5798564 0.8961356 prediction 0.489779990394896 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142565462 chr7:142565466 synonymous SNV . 0 25 hm5C_associated_SNPs_109734 0 0 0 0 1 EPHB6 chr7:142565477 5'GT 142565477 Upstream 12bp
chr10 114173028 114173028 1 + C T SKCM 114173027 + 114173007 114173047 41 CTTTGAAGCCCACATTGTTTCCCGCGGTGCCTCGACTCCTT CTTTGAAGCCCACATTGTTTCTCGCGGTGCCTCGACTCCTT < 41bp 0.48398029136892 0.744888568826524 0.48691726 0.33514223 prediction 0.489777137653049 Functional Gain - ACSL5 ENSG00000197142 CDS Human protein_coding chr10:114173027 chr10:114173028 nonsynonymous SNV 0.428 3 22 hm5C_associated_SNPs_109735 0 0 1 0 2 ACSL5 chr10:114172931 3'AG 114172931 Downstream 98bp
chr10 114173028 114173028 1 + C T SKCM 114173027 + 114173007 114173047 41 CTTTGAAGCCCACATTGTTTCCCGCGGTGCCTCGACTCCTT CTTTGAAGCCCACATTGTTTCTCGCGGTGCCTCGACTCCTT < 41bp 0.48398029136892 0.744888568826524 0.48691726 0.33514223 prediction 0.489777137653049 Functional Gain - ACSL5 ENSG00000197142 CDS Human protein_coding chr10:114173027 chr10:114173028 nonsynonymous SNV 0.428 3 22 hm5C_associated_SNPs_109735 0 0 1 0 2 ACSL5 chr10:114173065 5'GT 114173065 Upstream 38bp
chr20 61869950 61869950 1 + C G HNSC 61869946 + 61869926 61869966 41 GTGGGAAGAACCGGAAGACGCAGCCCCTGTGGCCCCCTCCG GTGGGAAGAACCGGAAGACGCAGCGCCTGTGGCCCCCTCCG < 41bp 0.613373147778711 0.858252361804759 0.8323225 0.89597 prediction 0.489758428052097 Functional Gain - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61869946 chr20:61869950 synonymous SNV . 0 25 hm5C_associated_SNPs_109739 0 0 1 0 2 BIRC7 chr20:61869921 3'AG 61869921 Downstream 30bp
chr20 61869950 61869950 1 + C G HNSC 61869946 + 61869926 61869966 41 GTGGGAAGAACCGGAAGACGCAGCCCCTGTGGCCCCCTCCG GTGGGAAGAACCGGAAGACGCAGCGCCTGTGGCCCCCTCCG < 41bp 0.613373147778711 0.858252361804759 0.8323225 0.89597 prediction 0.489758428052097 Functional Gain - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61869946 chr20:61869950 synonymous SNV . 0 25 hm5C_associated_SNPs_109739 0 0 1 0 2 BIRC7 chr20:61869966 5'GT 61869966 Upstream 17bp
chr3 101280764 101280764 1 + C G rs2303475 101280763 + 101280743 101280783 41 GTGCTAGCTTCGGCGCGGATCCCTGGGCGTCCGTACGTCGG GTGCTAGCTTCGGCGCGGATCGCTGGGCGTCCGTACGTCGG < 41bp 0.47196361548659 0.744873534128979 0.22212303 0.25085974 prediction 0.489747068257959 Functional Gain - TRMT10C ENSG00000174173 UTR5 Human protein_coding chr3:101280763 chr3:101280764 . . 0 22 hm5C_associated_SNPs_109741 0 0 1 0 1 TRMT10C chr3:101280847 5'GT 101280847 Upstream 84bp
chr22 29704662 29704662 1 + C G rs56037813 29704661 + 29704641 29704681 41 GGACACCACTGAAACCGCCCCCGCACCAGGGACTCCTGCCC GGACACCACTGAAACCGCCCCGGCACCAGGGACTCCTGCCC < 41bp 0.44836998849472 0.744869149481229 0.053857446 0.2562442 prediction 0.489738298962457 Functional Gain - GAS2L1 ENSG00000185340 CDS Human protein_coding chr22:29704661 chr22:29704662 synonymous SNV . 0 22 hm5C_associated_SNPs_109742 0 0 0 0 1 GAS2L1 chr22:29704728 5'GT 29704728 Upstream 67bp
chr19 51358246 51358246 1 + T G SKCM 51358244 + 51358224 51358264 41 GTTGTCTTCCTCACCCTGTCCGTGACGTGGATTGGTGAGAG GTTGTCTTCCTCACCCTGTCCGGGACGTGGATTGGTGAGAG < 41bp 0.638916887773994 0.883782978464362 0.12126389 0.5486669 prediction 0.489732181380736 Functional Gain - KLK3 ENSG00000142515 CDS Human protein_coding chr19:51358244 chr19:51358246 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_109743 0 0 0 0 1 KLK3 chr19:51358257 5'GT 51358257 Upstream 12bp
chr11 1078538 1078538 1 + C G rs41501548 1078534 + 1078514 1078554 41 TGCCGCTGGAGCCGTATCTGCGCGCCTGCCAGCAGGACCGC TGCCGCTGGAGCCGTATCTGCGCGGCTGCCAGCAGGACCGC < 41bp 0.459381270563582 0.744853794509586 0.834519 0.8775935 prediction 0.489707589019172 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1078534 chr11:1078538 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_109747 0 0 0 0 1 MUC2 chr11:1078456 3'AG 1078456 Downstream 83bp
chr15 80869292 80869292 1 + C A ACC 80869291 + 80869271 80869311 41 CCCATTTCCCTCTGGACACTCCGGGAAGGCCTTCAGGTATG CCCATTTCCCTCTGGACACTCAGGGAAGGCCTTCAGGTATG < 41bp 0.557325975152496 0.802179690519701 0.89620054 0.92694634 prediction 0.489707430734408 Functional Gain - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80869291 chr15:80869292 synonymous SNV . 0 22 hm5C_associated_SNPs_109748 0 0 1 0 2 ARNT2 chr15:80869207 3'AG 80869207 Downstream 86bp
chr15 80869292 80869292 1 + C A ACC 80869291 + 80869271 80869311 41 CCCATTTCCCTCTGGACACTCCGGGAAGGCCTTCAGGTATG CCCATTTCCCTCTGGACACTCAGGGAAGGCCTTCAGGTATG < 41bp 0.557325975152496 0.802179690519701 0.89620054 0.92694634 prediction 0.489707430734408 Functional Gain - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80869291 chr15:80869292 synonymous SNV . 0 22 hm5C_associated_SNPs_109748 0 0 1 0 2 ARNT2 chr15:80869306 5'GT 80869306 Upstream 15bp
chr17 45286872 45286872 1 + C A UCEC 45286871 + 45286851 45286891 41 AGCCCCTGCACCAGCCCCTGCCCCAGCTCCTGAGGCTCCCA AGCCCCTGCACCAGCCCCTGCACCAGCTCCTGAGGCTCCCA < 41bp 0.486171902630605 0.74484632850166 0.19832462 0.22204468 prediction 0.48969265700332 Functional Gain - MYL4 ENSG00000198336 CDS Human protein_coding chr17:45286871 chr17:45286872 synonymous SNV . 0 22 hm5C_associated_SNPs_109750 0 0 1 0 1 MYL4 chr17:45286923 5'GT 45286923 Upstream 52bp
chr3 128976653 128976653 1 + T C OV 128976651 + 128976631 128976671 41 GTGTATGAAGCCGCCTCGGCCATCGTCAATCTGCCAGGCTG GTGTATGAAGCCGCCTCGGCCACCGTCAATCTGCCAGGCTG < 41bp 0.562357606791321 0.807203542109027 0.3243931 0.4150783 prediction 0.489691870635413 Functional Gain - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128976651 chr3:128976653 nonsynonymous SNV 0.986 2 23 hm5C_associated_SNPs_109752 0 0 1 0 2 COPG1 chr3:128976570 3'AG 128976570 Downstream 84bp
chr3 128976653 128976653 1 + T C OV 128976651 + 128976631 128976671 41 GTGTATGAAGCCGCCTCGGCCATCGTCAATCTGCCAGGCTG GTGTATGAAGCCGCCTCGGCCACCGTCAATCTGCCAGGCTG < 41bp 0.562357606791321 0.807203542109027 0.3243931 0.4150783 prediction 0.489691870635413 Functional Gain - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128976651 chr3:128976653 nonsynonymous SNV 0.986 2 23 hm5C_associated_SNPs_109752 0 0 1 0 2 COPG1 chr3:128976703 5'GT 128976703 Upstream 51bp
chr16 28913630 28913630 1 + T C UCEC 28913628 + 28913608 28913648 41 TTCAACCCACCAGACCTGGACATCATGGACCGCCCCCCCCG TTCAACCCACCAGACCTGGACACCATGGACCGCCCCCCCCG < 41bp 0.58379489292222 0.82863607562776 0.099960506 0.104418635 prediction 0.48968236541108 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28913628 chr16:28913630 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_109753 0 0 0 0 1 ATP2A1 chr16:28913707 5'GT 28913707 Upstream 78bp
chr11 60978643 60978643 1 + C G rs576304258 60978639 + 60978619 60978659 41 CACCGGCACCTCTCTGCTGACCGGCCCAACCAGCCCCATTG CACCGGCACCTCTCTGCTGACCGGGCCAACCAGCCCCATTG < 41bp 0.439116544681986 0.744839771640952 0.3034798 0.92866004 prediction 0.489679543281904 Functional Gain - PGA3 ENSG00000229859 CDS Human protein_coding chr11:60978639 chr11:60978643 synonymous SNV . 0 25 hm5C_associated_SNPs_109754 0 0 0 0 2 PGA3 chr11:60978562 3'AG 60978562 Downstream 82bp
chr11 60978643 60978643 1 + C G rs576304258 60978639 + 60978619 60978659 41 CACCGGCACCTCTCTGCTGACCGGCCCAACCAGCCCCATTG CACCGGCACCTCTCTGCTGACCGGGCCAACCAGCCCCATTG < 41bp 0.439116544681986 0.744839771640952 0.3034798 0.92866004 prediction 0.489679543281904 Functional Gain - PGA3 ENSG00000229859 CDS Human protein_coding chr11:60978639 chr11:60978643 synonymous SNV . 0 25 hm5C_associated_SNPs_109754 0 0 0 0 2 PGA3 chr11:60978706 5'GT 60978706 Upstream 64bp
chr8 42024725 42024725 1 + C A UCEC 42024724 + 42024704 42024744 41 GTCAAACATAACATCAGTTTCCGGGACAGTAGTTCCCTTGG GTCAAACATAACATCAGTTTCAGGGACAGTAGTTCCCTTGG < 41bp 0.50781105453734 0.752647386748435 0.90678406 0.9208585 prediction 0.489672664422191 Functional Gain - AP3M2 ENSG00000070718 CDS Human protein_coding chr8:42024724 chr8:42024725 synonymous SNV . 0 22 hm5C_associated_SNPs_109757 0 0 1 0 1 AP3M2 chr8:42024682 3'AG 42024682 Downstream 44bp
chr8 145662239 145662239 1 - T C HNSC 145662242 - 145662222 145662262 41 GACCCAGGTGGCCAGGGCTGCGAAGGCATCACCCCCCTCCA GACCCAGGTGGCCAGGGCTGCGAGGGCATCACCCCCCTCCA < 41bp 0.508720401311688 0.753534719241823 0.69289786 0.9384309 prediction 0.48962863586027 Functional Gain - TONSL ENSG00000160949 CDS Human protein_coding chr8:145662242 chr8:145662239 synonymous SNV . 0 24 hm5C_associated_SNPs_109762 0 0 1 0 2 TONSL chr8:145662140 5'GT 145662140 Upstream 100bp
chr8 145662239 145662239 1 - T C HNSC 145662242 - 145662222 145662262 41 GACCCAGGTGGCCAGGGCTGCGAAGGCATCACCCCCCTCCA GACCCAGGTGGCCAGGGCTGCGAGGGCATCACCCCCCTCCA < 41bp 0.508720401311688 0.753534719241823 0.69289786 0.9384309 prediction 0.48962863586027 Functional Gain - TONSL ENSG00000160949 CDS Human protein_coding chr8:145662242 chr8:145662239 synonymous SNV . 0 24 hm5C_associated_SNPs_109762 0 0 1 0 2 TONSL chr8:145662303 3'AG 145662303 Downstream 65bp
chr7 23205334 23205334 1 + C A UCEC 23205330 + 23205310 23205350 41 GCTACAGGATTATAGCTGGACAGACATCCGCTGCCCCTTTG GCTACAGGATTATAGCTGGACAGAAATCCGCTGCCCCTTTG < 41bp 0.338726373456713 0.744812475513805 0.1277906 0.17162463 prediction 0.489624951027609 Functional Gain - KLHL7 ENSG00000122550 CDS Human protein_coding chr7:23205330 chr7:23205334 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_109763 0 0 0 0 1 KLHL7 chr7:23205317 3'AG 23205317 Downstream 18bp
chrX 22112163 22112163 1 + C A COAD 22112162 + 22112142 22112182 41 GCTTTTAGGAGCTAACAGTTCCAGAGCAGAGCATGACATGA GCTTTTAGGAGCTAACAGTTCAAGAGCAGAGCATGACATGA < 41bp 0.516762256713154 0.761571992375075 0.40085614 0.42079195 prediction 0.489619471323843 Functional Gain - PHEX ENSG00000102174 CDS Human protein_coding chrX:22112162 chrX:22112163 synonymous SNV . 0 22 hm5C_associated_SNPs_109765 0 0 1 0 2 PHEX chrX:22112101 3'AG 22112101 Downstream 63bp
chrX 22112163 22112163 1 + C A COAD 22112162 + 22112142 22112182 41 GCTTTTAGGAGCTAACAGTTCCAGAGCAGAGCATGACATGA GCTTTTAGGAGCTAACAGTTCAAGAGCAGAGCATGACATGA < 41bp 0.516762256713154 0.761571992375075 0.40085614 0.42079195 prediction 0.489619471323843 Functional Gain - PHEX ENSG00000102174 CDS Human protein_coding chrX:22112162 chrX:22112163 synonymous SNV . 0 22 hm5C_associated_SNPs_109765 0 0 1 0 2 PHEX chrX:22112217 5'GT 22112217 Upstream 55bp
chr16 14755801 14755801 1 + C A UCEC 14755800 + 14755780 14755820 41 TATACGCCCTCAAGAGCTCCCCCAGGCTGAGTCTGCTCTAC TATACGCCCTCAAGAGCTCCCACAGGCTGAGTCTGCTCTAC < 41bp 0.479534966077282 0.744805140463917 0.11079261 0.26234782 prediction 0.489610280927834 Functional Gain - BFAR ENSG00000103429 CDS Human protein_coding chr16:14755800 chr16:14755801 nonsynonymous SNV 0.304 4 22 hm5C_associated_SNPs_109766 0 0 1 0 1 BFAR chr16:14755749 3'AG 14755749 Downstream 53bp
chr1 17550896 17550896 1 + C A rs144156500 17550892 + 17550872 17550912 41 TGAGGTTGACACAGGCCGCACAGGCAAGGTGAAGAGGAGCC TGAGGTTGACACAGGCCGCACAGGAAAGGTGAAGAGGAGCC < 41bp 0.333896607454336 0.744795867159488 0.07645303 0.1549921 prediction 0.489591734318976 Functional Gain - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17550892 chr1:17550896 synonymous SNV . 0 25 hm5C_associated_SNPs_109771 0 0 0 0 2 PADI1 chr1:17550862 3'AG 17550862 Downstream 35bp
chr1 17550896 17550896 1 + C A rs144156500 17550892 + 17550872 17550912 41 TGAGGTTGACACAGGCCGCACAGGCAAGGTGAAGAGGAGCC TGAGGTTGACACAGGCCGCACAGGAAAGGTGAAGAGGAGCC < 41bp 0.333896607454336 0.744795867159488 0.07645303 0.1549921 prediction 0.489591734318976 Functional Gain - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17550892 chr1:17550896 synonymous SNV . 0 25 hm5C_associated_SNPs_109771 0 0 0 0 2 PADI1 chr1:17550923 5'GT 17550923 Upstream 28bp
chr4 56738082 56738082 1 + C T LUSC 56738081 + 56738061 56738101 41 TGATTTGCGAGAGCTTTTTGCCCGGAGACTGGCCAGTCACC TGATTTGCGAGAGCTTTTTGCTCGGAGACTGGCCAGTCACC < 41bp 0.524233920021287 0.769029289337391 0.27615464 0.20093167 prediction 0.489590738632207 Functional Gain - EXOC1 ENSG00000090989 CDS Human protein_coding chr4:56738081 chr4:56738082 synonymous SNV . 0 22 hm5C_associated_SNPs_109772 0 0 1 0 2 EXOC1 chr4:56738015 3'AG 56738015 Downstream 68bp
chr4 56738082 56738082 1 + C T LUSC 56738081 + 56738061 56738101 41 TGATTTGCGAGAGCTTTTTGCCCGGAGACTGGCCAGTCACC TGATTTGCGAGAGCTTTTTGCTCGGAGACTGGCCAGTCACC < 41bp 0.524233920021287 0.769029289337391 0.27615464 0.20093167 prediction 0.489590738632207 Functional Gain - EXOC1 ENSG00000090989 CDS Human protein_coding chr4:56738081 chr4:56738082 synonymous SNV . 0 22 hm5C_associated_SNPs_109772 0 0 1 0 2 EXOC1 chr4:56738124 5'GT 56738124 Upstream 43bp
chr17 73752902 73752902 1 + T C UCEC 73752900 + 73752880 73752920 41 CGGAGGCCCAATGGGGATATCGTCGGCTACCTGGTGACCTG CGGAGGCCCAATGGGGATATCGCCGGCTACCTGGTGACCTG < 41bp 0.486046816623043 0.744782239732649 0.8809301 0.88760674 prediction 0.489564479465298 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73752900 chr17:73752902 nonsynonymous SNV 0.478 1 23 hm5C_associated_SNPs_109773 0 0 0 0 1 ITGB4 chr17:73752940 5'GT 73752940 Upstream 39bp
chrX 48672893 48672893 1 + C A UCEC 48672889 + 48672869 48672909 41 CGCTACGAGCAGGGTAGGTTCTGGCCCCACCTGAAGGCCTC CGCTACGAGCAGGGTAGGTTCTGGACCCACCTGAAGGCCTC < 41bp 0.678617554424727 0.923397816433455 0.8458357 0.92228556 prediction 0.489560524017456 Functional Gain - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48672889 chrX:48672893 nonsynonymous SNV 0.944 5 25 hm5C_associated_SNPs_109774 0 0 1 0 1 HDAC6 chrX:48672973 5'GT 48672973 Upstream 81bp
chr17 56326514 56326514 1 + C G STAD 56326510 + 56326490 56326530 41 GCGACCCGTGCAGCCCTTACCGCACCATTACGGGAGACTGC GCGACCCGTGCAGCCCTTACCGCAGCATTACGGGAGACTGC < 41bp 0.449922610766536 0.744771789199873 0.26272017 0.860693 prediction 0.489543578399745 Functional Gain - LPO ENSG00000167419 CDS Human protein_coding chr17:56326510 chr17:56326514 nonsynonymous SNV 0.883 2 25 hm5C_associated_SNPs_109776 0 0 0 0 1 LPO chr17:56326538 5'GT 56326538 Upstream 25bp
chr19 50944199 50944199 1 + C A rs200355496 50944198 + 50944178 50944218 41 ACGATGACCTAGGCATCCCCCCGGAGATTTGGGAGCTCCTG ACGATGACCTAGGCATCCCCCAGGAGATTTGGGAGCTCCTG < 41bp 0.556381531763776 0.801145452695059 0.89926445 0.90897155 prediction 0.489527841862565 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50944198 chr19:50944199 nonsynonymous SNV 0.850 2 22 hm5C_associated_SNPs_109779 0 0 0 0 1 MYBPC2 chr19:50944137 3'AG 50944137 Downstream 63bp
chr20 31825597 31825597 1 + C T SKCM 31825596 + 31825576 31825616 41 AGTTTGGAGGCCTGCCCGTGCCCCTGGACCAGACCCTGCCC AGTTTGGAGGCCTGCCCGTGCTCCTGGACCAGACCCTGCCC < 41bp 0.495660823115547 0.744748288109213 0.10371697 0.23688748 prediction 0.489496576218426 Functional Gain - BPIFA1 ENSG00000198183 CDS Human protein_coding chr20:31825596 chr20:31825597 nonsynonymous SNV 0.018 1 22 hm5C_associated_SNPs_109783 0 0 0 0 2 BPIFA1 chr20:31825503 3'AG 31825503 Downstream 95bp
chr20 31825597 31825597 1 + C T SKCM 31825596 + 31825576 31825616 41 AGTTTGGAGGCCTGCCCGTGCCCCTGGACCAGACCCTGCCC AGTTTGGAGGCCTGCCCGTGCTCCTGGACCAGACCCTGCCC < 41bp 0.495660823115547 0.744748288109213 0.10371697 0.23688748 prediction 0.489496576218426 Functional Gain - BPIFA1 ENSG00000198183 CDS Human protein_coding chr20:31825596 chr20:31825597 nonsynonymous SNV 0.018 1 22 hm5C_associated_SNPs_109783 0 0 0 0 2 BPIFA1 chr20:31825677 5'GT 31825677 Upstream 81bp
chr5 174156229 174156229 1 + T G UCEC 174156226 + 174156206 174156246 41 AATCGGAAGCCGCGCACGCCCTTTACCACATCCCAGCTCCT AATCGGAAGCCGCGCACGCCCTTGACCACATCCCAGCTCCT < 41bp 0.359608024453737 0.744747129171326 0.05248958 0.26637608 prediction 0.489494258342651 Functional Gain - MSX2 ENSG00000120149 CDS Human protein_coding chr5:174156226 chr5:174156229 nonsynonymous SNV 0.815 5 24 hm5C_associated_SNPs_109784 0 0 1 0 1 MSX2 chr5:174156162 3'AG 174156162 Downstream 68bp
chr8 86027662 86027662 1 + T C BLCA 86027660 + 86027640 86027680 41 CCTATCGATGAGTTAGTTCCCTTGGAACAGTTTGCAAGTAC CCTATCGATGAGTTAGTTCCCTCGGAACAGTTTGCAAGTAC < 41bp 0.543390472663626 0.788134060614074 0.053593844 0.08462736 prediction 0.489487175900896 Functional Gain - LRRCC1 ENSG00000133739 CDS Human protein_coding chr8:86027660 chr8:86027662 nonsynonymous SNV 0.052 2 23 hm5C_associated_SNPs_109785 0 0 1 0 1 LRRCC1 chr8:86027610 3'AG 86027610 Downstream 53bp
chr4 52942965 52942965 1 + C T SKCM 52942964 + 52942944 52942984 41 GGTCCTCCAGGAGCCGGTCTCCCAGCCCTGCCCCTCGCAGC GGTCCTCCAGGAGCCGGTCTCTCAGCCCTGCCCCTCGCAGC < 41bp 0.522424775637938 0.767148337088859 0.43726498 0.30622125 prediction 0.489447122901842 Functional Gain - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52942964 chr4:52942965 nonsynonymous SNV 0.083 2 22 hm5C_associated_SNPs_109787 0 0 1 0 1 SPATA18 chr4:52942945 3'AG 52942945 Downstream 21bp
chr1 87045108 87045108 1 + C T UCEC 87045107 + 87045087 87045127 41 ACCACCTTGGAGGATTTCAGCCGAACAGCATCCGGAGGTGC ACCACCTTGGAGGATTTCAGCTGAACAGCATCCGGAGGTGC < 41bp 0.500586549216536 0.745309345717813 0.24933362 0.2719826 prediction 0.489445593002553 Functional Gain - CLCA4 ENSG00000016602 CDS Human protein_coding chr1:87045107 chr1:87045108 stopgain 0.997 1 22 hm5C_associated_SNPs_109789 0 0 0 0 1 CLCA4 chr1:87045037 3'AG 87045037 Downstream 72bp
chr2 25315981 25315981 1 + T C LIHC 25315979 + 25315959 25315999 41 TCTGAGAGGCTCATCCGTGACGTGGGTCGCCATCGATATGG TCTGAGAGGCTCATCCGTGACGCGGGTCGCCATCGATATGG < 41bp 0.545242870906263 0.789960554945034 0.32171714 0.247455 prediction 0.48943536807754 Functional Gain - EFR3B ENSG00000084710 CDS Human protein_coding chr2:25315979 chr2:25315981 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_109791 0 0 0 0 1 EFR3B chr2:25315999 5'GT 25315999 Upstream 19bp
chr19 35630999 35630999 1 + C A LUSC 35630998 + 35630978 35631018 41 AGGACAATGGCGTCTCTTGGCCACATCTTGGTTTTCTGTGT AGGACAATGGCGTCTCTTGGCAACATCTTGGTTTTCTGTGT < 41bp 0.52260138563585 0.767313462002071 0.14843366 0.18760762 prediction 0.489424152732442 Functional Gain - FXYD1 ENSG00000266964 CDS Human processed_transcript chr19:35630998 chr19:35630999 nonsynonymous SNV 0.932 0 22 hm5C_associated_SNPs_109796 0 0 1 0 2 FXYD1 chr19:35630980 3'AG 35630980 Downstream 20bp
chr19 35630999 35630999 1 + C A LUSC 35630998 + 35630978 35631018 41 AGGACAATGGCGTCTCTTGGCCACATCTTGGTTTTCTGTGT AGGACAATGGCGTCTCTTGGCAACATCTTGGTTTTCTGTGT < 41bp 0.52260138563585 0.767313462002071 0.14843366 0.18760762 prediction 0.489424152732442 Functional Gain - FXYD1 ENSG00000266964 CDS Human protein_coding chr19:35630998 chr19:35630999 nonsynonymous SNV 0.932 0 22 hm5C_associated_SNPs_109796 0 0 1 0 2 FXYD1 chr19:35631044 5'GT 35631044 Upstream 46bp
chr2 28627145 28627145 1 + C T HNSC 28627144 + 28627124 28627164 41 CTGCCGGGCCTGGCCTCTGTCCCTGGACACATGGCCCTCCC CTGCCGGGCCTGGCCTCTGTCTCTGGACACATGGCCCTCCC < 41bp 0.479909071434077 0.744706128889871 0.11722407 0.072381884 prediction 0.489412257779742 Functional Gain - FOSL2 ENSG00000075426 CDS Human protein_coding chr2:28627144 chr2:28627145 nonsynonymous SNV 0.993 1 22 hm5C_associated_SNPs_109798 0 0 1 0 1 FOSL2 chr2:28627225 5'GT 28627225 Upstream 81bp
chr12 660099 660099 1 + C T LUSC 660098 + 660078 660118 41 CTGTCCTCAGTGCCTCTGATCCCCAAGTCGCATCTCCGCCA CTGTCCTCAGTGCCTCTGATCTCCAAGTCGCATCTCCGCCA < 41bp 0.472447764286102 0.744699161770025 0.4341326 0.96309537 prediction 0.489398323540051 Functional Gain - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:660098 chr12:660099 nonsynonymous SNV 0.991 0 22 hm5C_associated_SNPs_109800 0 0 0 0 2 B4GALNT3 chr12:660088 3'AG 660088 Downstream 12bp
chr12 660099 660099 1 + C T LUSC 660098 + 660078 660118 41 CTGTCCTCAGTGCCTCTGATCCCCAAGTCGCATCTCCGCCA CTGTCCTCAGTGCCTCTGATCTCCAAGTCGCATCTCCGCCA < 41bp 0.472447764286102 0.744699161770025 0.4341326 0.96309537 prediction 0.489398323540051 Functional Gain - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:660098 chr12:660099 nonsynonymous SNV 0.991 0 22 hm5C_associated_SNPs_109800 0 0 0 0 2 B4GALNT3 chr12:660197 5'GT 660197 Upstream 99bp
chr12 6554303 6554303 1 + C A BLCA 6554302 + 6554282 6554322 41 GTGGCTGTGCGTTCTGGGGACCCTGGTGGGGCTCTCAGCTA GTGGCTGTGCGTTCTGGGGACACTGGTGGGGCTCTCAGCTA < 41bp 0.503005369012423 0.747693533109962 0.39793938 0.51780087 prediction 0.489376328195078 Functional Gain - CD27 ENSG00000139193 CDS Human protein_coding chr12:6554302 chr12:6554303 synonymous SNV . 0 22 hm5C_associated_SNPs_109802 0 0 0 0 1 CD27 chr12:6554397 5'GT 6554397 Upstream 95bp
chr10 121212742 121212742 1 + C T COAD 121212741 + 121212721 121212761 41 ATCTGAACAGAAACCACCCTCCGGAACCGCCCAAGAAAGGG ATCTGAACAGAAACCACCCTCTGGAACCGCCCAAGAAAGGG < 41bp 0.53308741747199 0.777771016842063 0.47766724 0.7745738 prediction 0.489367198740145 Functional Gain - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121212741 chr10:121212742 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_109804 0 0 0 0 2 GRK5 chr10:121212657 3'AG 121212657 Downstream 86bp
chr10 121212742 121212742 1 + C T COAD 121212741 + 121212721 121212761 41 ATCTGAACAGAAACCACCCTCCGGAACCGCCCAAGAAAGGG ATCTGAACAGAAACCACCCTCTGGAACCGCCCAAGAAAGGG < 41bp 0.53308741747199 0.777771016842063 0.47766724 0.7745738 prediction 0.489367198740145 Functional Gain - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121212741 chr10:121212742 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_109804 0 0 0 0 2 GRK5 chr10:121212788 5'GT 121212788 Upstream 47bp
chr19 48917341 48917341 1 + C T rs563232119 48917340 + 48917320 48917360 41 CCTGGTGGTCATCTCCCTCACCAGAGACAGGACGTGGGAGG CCTGGTGGTCATCTCCCTCACTAGAGACAGGACGTGGGAGG < 41bp 0.516484448617633 0.761165530471657 0.8716315 0.3671844 prediction 0.489362163708047 Functional Gain - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48917340 chr19:48917341 synonymous SNV . 0 22 hm5C_associated_SNPs_109805 0 0 0 0 2 GRIN2D chr19:48917248 3'AG 48917248 Downstream 94bp
chr19 48917341 48917341 1 + C T rs563232119 48917340 + 48917320 48917360 41 CCTGGTGGTCATCTCCCTCACCAGAGACAGGACGTGGGAGG CCTGGTGGTCATCTCCCTCACTAGAGACAGGACGTGGGAGG < 41bp 0.516484448617633 0.761165530471657 0.8716315 0.3671844 prediction 0.489362163708047 Functional Gain - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48917340 chr19:48917341 synonymous SNV . 0 22 hm5C_associated_SNPs_109805 0 0 0 0 2 GRIN2D chr19:48917362 5'GT 48917362 Upstream 22bp
chr18 55020255 55020255 1 + C A LUSC 55020254 + 55020234 55020274 41 TACATGTTCCACGCGGGATTCCGGTGAGTGCGGGCCTCTGT TACATGTTCCACGCGGGATTCAGGTGAGTGCGGGCCTCTGT < 41bp 0.530628965412463 0.775306822399563 0.66758937 0.90553504 prediction 0.489355713974199 Functional Gain - ST8SIA3 ENSG00000177511 CDS Human protein_coding chr18:55020254 chr18:55020255 synonymous SNV . 0 22 hm5C_associated_SNPs_109807 0 0 0 0 1 ST8SIA3 chr18:55020256 5'GT 55020256 Upstream 2bp
chr19 37464636 37464636 1 + T G rs1625963 37464633 + 37464613 37464653 41 TGGTGGGAGTCCTGTCTGCACGGTATTCTGTGTGGCTGTGC TGGTGGGAGTCCTGTCTGCACGGGATTCTGTGTGGCTGTGC < 41bp 0.66222832612264 0.906903789891817 0.542895 0.894933 prediction 0.489350927538354 Functional Gain - ZNF568 ENSG00000198453 UTR5 Human protein_coding chr19:37464633 chr19:37464636 . . 0 24 hm5C_associated_SNPs_109810 0 0 0 0 1 ZNF568 chr19:37464655 5'GT 37464655 Upstream 20bp
chr2 234360655 234360655 1 + T C UCEC 234360653 + 234360633 234360673 41 TCCTTACCCGGTGGCTCAGTCATCAGTCGCCTGTTAATTAA TCCTTACCCGGTGGCTCAGTCACCAGTCGCCTGTTAATTAA < 41bp 0.44200773047969 0.744673329384821 0.22922531 0.27795717 prediction 0.489346658769642 Functional Gain - DGKD ENSG00000077044 CDS Human protein_coding chr2:234360653 chr2:234360655 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_109811 0 0 0 0 2 DGKD chr2:234360610 3'AG 234360610 Downstream 46bp
chr2 234360655 234360655 1 + T C UCEC 234360653 + 234360633 234360673 41 TCCTTACCCGGTGGCTCAGTCATCAGTCGCCTGTTAATTAA TCCTTACCCGGTGGCTCAGTCACCAGTCGCCTGTTAATTAA < 41bp 0.44200773047969 0.744673329384821 0.22922531 0.27795717 prediction 0.489346658769642 Functional Gain - DGKD ENSG00000077044 CDS Human protein_coding chr2:234360653 chr2:234360655 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_109811 0 0 0 0 2 DGKD chr2:234360706 5'GT 234360706 Upstream 52bp
chr3 14489185 14489185 1 + C A SKCM 14489184 + 14489164 14489204 41 TACTACCTGTTCCAGTCCTTCCAGAAGGAGCTGCCCTGGGC TACTACCTGTTCCAGTCCTTCAAGAAGGAGCTGCCCTGGGC < 41bp 0.536744891340543 0.781409012678855 0.58705884 0.7422993 prediction 0.489328242676624 Functional Gain - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14489184 chr3:14489185 nonsynonymous SNV 0.912 1 22 hm5C_associated_SNPs_109812 0 0 1 0 1 SLC6A6 chr3:14489090 3'AG 14489090 Downstream 96bp
chr19 33651385 33651385 1 + C T GBM 33651384 + 33651364 33651404 41 TGGGATGTAGCAGAAGGCTACCGGAAGCTCTCTTTGAAGGT TGGGATGTAGCAGAAGGCTACTGGAAGCTCTCTTTGAAGGT < 41bp 0.497100153836139 0.744661662960272 0.87317026 0.75268275 prediction 0.489323325920545 Functional Gain - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33651384 chr19:33651385 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_109813 0 0 0 0 2 WDR88 chr19:33651320 3'AG 33651320 Downstream 66bp
chr19 33651385 33651385 1 + C T GBM 33651384 + 33651364 33651404 41 TGGGATGTAGCAGAAGGCTACCGGAAGCTCTCTTTGAAGGT TGGGATGTAGCAGAAGGCTACTGGAAGCTCTCTTTGAAGGT < 41bp 0.497100153836139 0.744661662960272 0.87317026 0.75268275 prediction 0.489323325920545 Functional Gain - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33651384 chr19:33651385 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_109813 0 0 0 0 2 WDR88 chr19:33651402 5'GT 33651402 Upstream 18bp
chr2 101598822 101598822 1 + C T SKCM 101598821 + 101598801 101598841 41 CAGGAGCAGCTCTGCCTGGTCCAGGACTCCAACGTCCAGGT CAGGAGCAGCTCTGCCTGGTCTAGGACTCCAACGTCCAGGT < 41bp 0.51174691961294 0.756405964418013 0.50734556 0.16284928 prediction 0.489318089610147 Functional Gain - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101598821 chr2:101598822 stopgain 1.000 1 22 hm5C_associated_SNPs_109814 0 0 1 0 1 NPAS2 chr2:101598839 5'GT 101598839 Upstream 18bp
chrX 99919896 99919896 1 + C A rs150552508 99919895 + 99919875 99919915 41 CACCTGGAAGGTGATCGCAGCCGAATCTGCATGGAAGATGG CACCTGGAAGGTGATCGCAGCAGAATCTGCATGGAAGATGG < 41bp 0.475849455374467 0.744643469445002 0.09417689 0.16444108 prediction 0.489286938890004 Functional Gain - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99919895 chrX:99919896 synonymous SNV . 0 22 hm5C_associated_SNPs_109816 2 0 0 0 1 SRPX2 chrX:99919947 5'GT 99919947 Upstream 52bp
chr1 212238331 212238331 1 + C T UCEC 212238330 + 212238310 212238350 41 ACAAGCAAACCCCTTCAAAACCCAAGAAGAAACAGAATTCA ACAAGCAAACCCCTTCAAAACTCAAGAAGAAACAGAATTCA < 41bp 0.48552130647215 0.744642357001892 0.20896962 0.12642735 prediction 0.489284714003784 Functional Gain - DTL ENSG00000143476 CDS Human protein_coding chr1:212238330 chr1:212238331 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_109817 0 0 1 0 2 DTL chr1:212238259 3'AG 212238259 Downstream 73bp
chr1 212238331 212238331 1 + C T UCEC 212238330 + 212238310 212238350 41 ACAAGCAAACCCCTTCAAAACCCAAGAAGAAACAGAATTCA ACAAGCAAACCCCTTCAAAACTCAAGAAGAAACAGAATTCA < 41bp 0.48552130647215 0.744642357001892 0.20896962 0.12642735 prediction 0.489284714003784 Functional Gain - DTL ENSG00000143476 CDS Human protein_coding chr1:212238330 chr1:212238331 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_109817 0 0 1 0 2 DTL chr1:212238371 5'GT 212238371 Upstream 41bp
chr14 77928548 77928548 1 + C T SKCM 77928547 + 77928527 77928567 41 ACAAAGGACATGTGGAGATCCCCAATTTGTCTGATGAAAAC ACAAAGGACATGTGGAGATCCTCAATTTGTCTGATGAAAAC < 41bp 0.550391682808063 0.795033825144796 0.039455146 0.76161265 prediction 0.489284284673468 Functional Gain - AHSA1 ENSG00000100591 CDS Human protein_coding chr14:77928547 chr14:77928548 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_109818 0 0 1 0 2 AHSA1 chr14:77928503 3'AG 77928503 Downstream 46bp
chr14 77928548 77928548 1 + C T SKCM 77928547 + 77928527 77928567 41 ACAAAGGACATGTGGAGATCCCCAATTTGTCTGATGAAAAC ACAAAGGACATGTGGAGATCCTCAATTTGTCTGATGAAAAC < 41bp 0.550391682808063 0.795033825144796 0.039455146 0.76161265 prediction 0.489284284673468 Functional Gain - AHSA1 ENSG00000100591 CDS Human protein_coding chr14:77928547 chr14:77928548 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_109818 0 0 1 0 2 AHSA1 chr14:77928585 5'GT 77928585 Upstream 38bp
chr20 42232877 42232877 1 + T A STAD 42232873 + 42232853 42232893 41 ATTTCCATCCTAAAGAAGCTCTAGTTTCCAGTGGAGTCTTG ATTTCCATCCTAAAGAAGCTCTAGATTCCAGTGGAGTCTTG < 41bp 0.406885923746401 0.744638141563119 0.103274226 0.13786358 prediction 0.489276283126239 Functional Gain - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42232873 chr20:42232877 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_109819 0 0 1 0 2 IFT52 chr20:42232823 3'AG 42232823 Downstream 55bp
chr20 42232877 42232877 1 + T A STAD 42232873 + 42232853 42232893 41 ATTTCCATCCTAAAGAAGCTCTAGTTTCCAGTGGAGTCTTG ATTTCCATCCTAAAGAAGCTCTAGATTCCAGTGGAGTCTTG < 41bp 0.406885923746401 0.744638141563119 0.103274226 0.13786358 prediction 0.489276283126239 Functional Gain - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42232873 chr20:42232877 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_109819 0 0 1 0 2 IFT52 chr20:42232898 5'GT 42232898 Upstream 22bp
chr1 171300830 171300830 1 + C A THCA 171300829 + 171300809 171300849 41 ATAGTCAAGAGTACAAGATCCCAGAAGGCTTTCAGGGCAAA ATAGTCAAGAGTACAAGATCCAAGAAGGCTTTCAGGGCAAA < 41bp 0.529299344721958 0.773936045708701 0.12499243 0.14905652 prediction 0.489273401973485 Functional Gain - FMO4 ENSG00000076258 CDS Human protein_coding chr1:171300829 chr1:171300830 nonsynonymous SNV 0.976 3 22 hm5C_associated_SNPs_109820 0 0 0 0 2 FMO4 chr1:171300779 3'AG 171300779 Downstream 52bp
chr1 171300830 171300830 1 + C A THCA 171300829 + 171300809 171300849 41 ATAGTCAAGAGTACAAGATCCCAGAAGGCTTTCAGGGCAAA ATAGTCAAGAGTACAAGATCCAAGAAGGCTTTCAGGGCAAA < 41bp 0.529299344721958 0.773936045708701 0.12499243 0.14905652 prediction 0.489273401973485 Functional Gain - FMO4 ENSG00000076258 CDS Human protein_coding chr1:171300829 chr1:171300830 nonsynonymous SNV 0.976 3 22 hm5C_associated_SNPs_109820 0 0 0 0 2 FMO4 chr1:171300921 5'GT 171300921 Upstream 92bp
chr7 75614179 75614179 1 + C T UCEC 75614178 + 75614158 75614198 41 ACCTGGACATCACCAACCCGCCGCGTACCAACGTGCTGTAC ACCTGGACATCACCAACCCGCTGCGTACCAACGTGCTGTAC < 41bp 0.500529272123719 0.745162599535967 0.034795374 0.031095028 prediction 0.489266654824495 Functional Gain - POR ENSG00000127948 CDS Human protein_coding chr7:75614178 chr7:75614179 nonsynonymous SNV 0.072 5 22 hm5C_associated_SNPs_109821 0 0 1 0 2 POR chr7:75614095 3'AG 75614095 Downstream 85bp
chr7 75614179 75614179 1 + C T UCEC 75614178 + 75614158 75614198 41 ACCTGGACATCACCAACCCGCCGCGTACCAACGTGCTGTAC ACCTGGACATCACCAACCCGCTGCGTACCAACGTGCTGTAC < 41bp 0.500529272123719 0.745162599535967 0.034795374 0.031095028 prediction 0.489266654824495 Functional Gain - POR ENSG00000127948 CDS Human protein_coding chr7:75614178 chr7:75614179 nonsynonymous SNV 0.072 5 22 hm5C_associated_SNPs_109821 0 0 1 0 2 POR chr7:75614276 5'GT 75614276 Upstream 98bp
chr9 130868088 130868088 1 + C A LUAD 130868084 + 130868064 130868104 41 TCGAGAAGGAGGGGCCAGGTCACTCTGGCGGGGCAATGGCA TCGAGAAGGAGGGGCCAGGTCACTATGGCGGGGCAATGGCA < 41bp 0.308538000403201 0.744629877900229 0.26270163 0.19012904 prediction 0.489259755800458 Functional Gain - SLC25A25 ENSG00000148339 CDS Human protein_coding chr9:130868084 chr9:130868088 synonymous SNV . 0 25 hm5C_associated_SNPs_109823 0 0 1 0 2 SLC25A25 chr9:130868008 3'AG 130868008 Downstream 81bp
chr9 130868088 130868088 1 + C A LUAD 130868084 + 130868064 130868104 41 TCGAGAAGGAGGGGCCAGGTCACTCTGGCGGGGCAATGGCA TCGAGAAGGAGGGGCCAGGTCACTATGGCGGGGCAATGGCA < 41bp 0.308538000403201 0.744629877900229 0.26270163 0.19012904 prediction 0.489259755800458 Functional Gain - SLC25A25 ENSG00000148339 CDS Human protein_coding chr9:130868084 chr9:130868088 synonymous SNV . 0 25 hm5C_associated_SNPs_109823 0 0 1 0 2 SLC25A25 chr9:130868160 5'GT 130868160 Upstream 73bp
chr8 141521736 141521736 1 + C G rs201295253 141521735 + 141521715 141521755 41 GGAGGCGTTGGTGCTCACGGCCAAGGCCACGGTGAGGGGGC GGAGGCGTTGGTGCTCACGGCGAAGGCCACGGTGAGGGGGC < 41bp 0.594360315423975 0.838989630727143 0.33217523 0.41078797 prediction 0.489258630606336 Functional Gain - CHRAC1 ENSG00000104472 CDS Human protein_coding chr8:141521735 chr8:141521736 synonymous SNV . 0 22 hm5C_associated_SNPs_109824 0 0 1 0 1 CHRAC1 chr8:141521745 5'GT 141521745 Upstream 10bp
chr17 46926728 46926728 1 + C T SKCM 46926727 + 46926707 46926747 41 TCAGACATGCAGGCTGAGCTCCAAAAGAAGCAGGTATGGCT TCAGACATGCAGGCTGAGCTCTAAAAGAAGCAGGTATGGCT < 41bp 0.495624629718459 0.744628118587071 0.28183067 0.5337714 prediction 0.489256237174141 Functional Gain - CALCOCO2 ENSG00000136436 CDS Human protein_coding chr17:46926727 chr17:46926728 stopgain 0.869 0 22 hm5C_associated_SNPs_109825 0 0 1 0 1 CALCOCO2 chr17:46926739 5'GT 46926739 Upstream 12bp
chr3 119338448 119338448 1 + C T SKCM 119338447 + 119338427 119338467 41 GGTGTCAAGATAGAGCCGCTCCCCAAGGAAGTGAAAGTCTA GGTGTCAAGATAGAGCCGCTCTCCAAGGAAGTGAAAGTCTA < 41bp 0.568499356876014 0.813125462889786 0.27059627 0.9622561 prediction 0.489252212027544 Functional Gain - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119338447 chr3:119338448 nonsynonymous SNV 0.975 4 22 hm5C_associated_SNPs_109826 0 0 0 0 2 PLA1A chr3:119338410 3'AG 119338410 Downstream 39bp
chr3 119338448 119338448 1 + C T SKCM 119338447 + 119338427 119338467 41 GGTGTCAAGATAGAGCCGCTCCCCAAGGAAGTGAAAGTCTA GGTGTCAAGATAGAGCCGCTCTCCAAGGAAGTGAAAGTCTA < 41bp 0.568499356876014 0.813125462889786 0.27059627 0.9622561 prediction 0.489252212027544 Functional Gain - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119338447 chr3:119338448 nonsynonymous SNV 0.975 4 22 hm5C_associated_SNPs_109826 0 0 0 0 2 PLA1A chr3:119338499 5'GT 119338499 Upstream 52bp
chr20 2846129 2846129 1 + C G rs142902093 2846125 + 2846105 2846145 41 GTTTTCCAAGAGCAAGAAATCACCCATTGGCTACCTGGTGA GTTTTCCAAGAGCAAGAAATCACCGATTGGCTACCTGGTGA < 41bp 0.465245536668074 0.74462267077206 0.13951698 0.32028866 prediction 0.489245341544119 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2846125 chr20:2846129 synonymous SNV . 0 25 hm5C_associated_SNPs_109828 0 0 1 0 2 VPS16 chr20:2846045 3'AG 2846045 Downstream 85bp
chr20 2846129 2846129 1 + C G rs142902093 2846125 + 2846105 2846145 41 GTTTTCCAAGAGCAAGAAATCACCCATTGGCTACCTGGTGA GTTTTCCAAGAGCAAGAAATCACCGATTGGCTACCTGGTGA < 41bp 0.465245536668074 0.74462267077206 0.13951698 0.32028866 prediction 0.489245341544119 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2846125 chr20:2846129 synonymous SNV . 0 25 hm5C_associated_SNPs_109828 0 0 1 0 2 VPS16 chr20:2846141 5'GT 2846141 Upstream 13bp
chr1 45243397 45243397 1 + C T UCEC 45243396 + 45243376 45243416 41 TCGTGCTCATCGACAGCACACCGTACCGACAGTGGTACGAG TCGTGCTCATCGACAGCACACTGTACCGACAGTGGTACGAG < 41bp 0.511661581155193 0.756281283684871 0.020472944 0.046601683 prediction 0.489239405059356 Functional Gain - RPS8 ENSG00000142937 CDS Human protein_coding chr1:45243396 chr1:45243397 nonsynonymous SNV 0.991 4 22 hm5C_associated_SNPs_109829 0 0 1 0 1 RPS8 chr1:45243461 5'GT 45243461 Upstream 65bp
chr11 75439135 75439135 1 + T C UCEC 75439133 + 75439113 75439153 41 CTGGATGCCAGGCCTGGATCCTTCACGCTGTTACTGCGGAA CTGGATGCCAGGCCTGGATCCTCCACGCTGTTACTGCGGAA < 41bp 0.58220254226009 0.826821296568934 0.32031626 0.9519406 prediction 0.489237508617688 Functional Gain - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75439133 chr11:75439135 nonsynonymous SNV 0.300 0 23 hm5C_associated_SNPs_109831 0 0 0 0 1 MOGAT2 chr11:75439189 5'GT 75439189 Upstream 55bp
chr2 177016754 177016754 1 + C A LUAD 177016750 + 177016730 177016770 41 CGGGACGGCACTCAAGCAGCCGGCCGTGGTCTACCCCTGGA CGGGACGGCACTCAAGCAGCCGGCAGTGGTCTACCCCTGGA < 41bp 0.676565995341221 0.921173202040969 0.27004793 0.3064741 prediction 0.489214413399496 Functional Gain - HOXD4 ENSG00000170166 CDS Human protein_coding chr2:177016750 chr2:177016754 synonymous SNV . 0 25 hm5C_associated_SNPs_109837 0 0 1 0 1 HOXD4 chr2:177016794 5'GT 177016794 Upstream 41bp
chr11 6631065 6631065 1 + C T UCEC 6631064 + 6631044 6631084 41 CCACGACATGCACTCAATAGCCGTAGTGTAATGGTGAGGCC CCACGACATGCACTCAATAGCTGTAGTGTAATGGTGAGGCC < 41bp 0.530985485973546 0.775576605784121 0.118821084 0.15914062 prediction 0.48918223962115 Functional Gain - ILK ENSG00000166333 CDS Human protein_coding chr11:6631064 chr11:6631065 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_109844 0 0 1 0 1 ILK chr11:6631076 5'GT 6631076 Upstream 12bp
chr6 46726500 46726500 1 + C A rs9472839 46726496 + 46726476 46726516 41 CAGGACCACCGTTGCGCTGCCCAGCAGAAGGGGCTGCCTCT CAGGACCACCGTTGCGCTGCCCAGAAGAAGGGGCTGCCTCT < 41bp 0.348541202051908 0.74458939463132 0.20335063 0.3309783 prediction 0.489178789262641 Functional Gain - ANKRD66 ENSG00000230062 CDS Human protein_coding chr6:46726496 chr6:46726500 nonsynonymous SNV 0.386 0 25 hm5C_associated_SNPs_109846 0 0 0 0 1 ANKRD66 chr6:46726460 3'AG 46726460 Downstream 41bp
chr15 78390393 78390393 1 + A G rs200508337 78390390 + 78390370 78390410 41 TGTGCACCATTACCAGGAGGCACAGCTCGAGCCCTTCAAAG TGTGCACCATTACCAGGAGGCACGGCTCGAGCCCTTCAAAG < 41bp 0.497845858054062 0.744580106503773 0.069817275 0.094872564 prediction 0.489160213007546 Functional Gain - SH2D7 ENSG00000183476 CDS Human protein_coding chr15:78390390 chr15:78390393 nonsynonymous SNV 0.657 1 24 hm5C_associated_SNPs_109849 0 0 0 0 1 SH2D7 chr15:78390436 5'GT 78390436 Upstream 44bp
chr9 138440563 138440563 1 + C A UCEC 138440562 + 138440542 138440582 41 CCTCACCTGCAGGTAGGAATCCTAATACCAACCTGGAGGCC CCTCACCTGCAGGTAGGAATCATAATACCAACCTGGAGGCC < 41bp 0.538609660121685 0.783185269941299 0.3287554 0.42591894 prediction 0.489151219639228 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138440562 chr9:138440563 nonsynonymous SNV 0.001 3 22 hm5C_associated_SNPs_109850 0 0 0 0 4 OBP2A chr9:138440489 3'AG 138440489 Downstream 75bp
chr9 138440563 138440563 1 + C A UCEC 138440562 + 138440542 138440582 41 CCTCACCTGCAGGTAGGAATCCTAATACCAACCTGGAGGCC CCTCACCTGCAGGTAGGAATCATAATACCAACCTGGAGGCC < 41bp 0.538609660121685 0.783185269941299 0.3287554 0.42591894 prediction 0.489151219639228 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138440562 chr9:138440563 nonsynonymous SNV 0.001 3 22 hm5C_associated_SNPs_109850 0 0 0 0 4 OBP2A chr9:138440505 3'AG 138440505 Downstream 59bp
chr9 138440563 138440563 1 + C A UCEC 138440562 + 138440542 138440582 41 CCTCACCTGCAGGTAGGAATCCTAATACCAACCTGGAGGCC CCTCACCTGCAGGTAGGAATCATAATACCAACCTGGAGGCC < 41bp 0.538609660121685 0.783185269941299 0.3287554 0.42591894 prediction 0.489151219639228 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138440562 chr9:138440563 nonsynonymous SNV 0.001 3 22 hm5C_associated_SNPs_109850 0 0 0 0 4 OBP2A chr9:138440554 3'AG 138440554 Downstream 10bp
chr9 138440563 138440563 1 + C A UCEC 138440562 + 138440542 138440582 41 CCTCACCTGCAGGTAGGAATCCTAATACCAACCTGGAGGCC CCTCACCTGCAGGTAGGAATCATAATACCAACCTGGAGGCC < 41bp 0.538609660121685 0.783185269941299 0.3287554 0.42591894 prediction 0.489151219639228 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138440562 chr9:138440563 nonsynonymous SNV 0.001 3 22 hm5C_associated_SNPs_109850 0 0 0 0 4 OBP2A chr9:138440655 5'GT 138440655 Upstream 93bp
chr7 43827605 43827605 1 + C T HNSC 43827604 + 43827584 43827624 41 CCTTCCTCAGCGTTCCTGAACCTGATTGGCTTCGTGTCGAG CCTTCCTCAGCGTTCCTGAACTTGATTGGCTTCGTGTCGAG < 41bp 0.535730877945444 0.780301981511905 0.10833886 0.20250723 prediction 0.489142207132922 Functional Gain - BLVRA ENSG00000106605 CDS Human protein_coding chr7:43827604 chr7:43827605 synonymous SNV . 0 22 hm5C_associated_SNPs_109851 0 0 1 0 1 BLVRA chr7:43827624 5'GT 43827624 Upstream 20bp
chr8 134237763 134237763 1 + T C SKCM 134237761 + 134237741 134237781 41 ATGTTAACGCCCAGTGCTGGCCTGAGCAAGAGAGCCGCCTC ATGTTAACGCCCAGTGCTGGCCCGAGCAAGAGAGCCGCCTC < 41bp 0.568687580369849 0.813256133496817 0.24879825 0.33705676 prediction 0.489137106253936 Functional Gain - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134237761 chr8:134237763 synonymous SNV . 0 23 hm5C_associated_SNPs_109852 0 0 0 0 1 WISP1 chr8:134237826 5'GT 134237826 Upstream 64bp
chr20 62904594 62904594 1 + C A UCEC 62904590 + 62904570 62904610 41 GCAGCACCAGTGGCAGTTCGCAGCCTCCAGGACTTGGCTCG GCAGCACCAGTGGCAGTTCGCAGCATCCAGGACTTGGCTCG < 41bp 0.675548699691759 0.920116729821983 0.74140346 0.87284076 prediction 0.489136060260448 Functional Gain - PCMTD2 ENSG00000203880 CDS Human protein_coding chr20:62904590 chr20:62904594 nonsynonymous SNV 0.886 4 25 hm5C_associated_SNPs_109853 0 0 1 0 1 PCMTD2 chr20:62904574 3'AG 62904574 Downstream 21bp
chr16 55731920 55731920 1 + C A UCEC 55731916 + 55731896 55731936 41 ACCTTCAGCACTTTCCTTCTCGCCCTGTTCTGCATAACCAA ACCTTCAGCACTTTCCTTCTCGCCATGTTCTGCATAACCAA < 41bp 0.312412569553032 0.744555392117841 0.08112979 0.590463 prediction 0.489110784235683 Functional Gain - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55731916 chr16:55731920 nonsynonymous SNV 0.986 1 25 hm5C_associated_SNPs_109855 0 0 0 0 1 SLC6A2 chr16:55731937 5'GT 55731937 Upstream 18bp
chr14 92909071 92909071 1 + C A LUAD 92909067 + 92909047 92909087 41 TCCTTTCCAGGGGTGTTCATCACCCATGGGGACGTCGGGGT TCCTTTCCAGGGGTGTTCATCACCAATGGGGACGTCGGGGT < 41bp 0.348454688322929 0.74455116349185 0.2828065 0.43011498 prediction 0.4891023269837 Functional Gain - SLC24A4 ENSG00000140090 CDS Human protein_coding chr14:92909067 chr14:92909071 nonsynonymous SNV 0.883 2 25 hm5C_associated_SNPs_109856 0 0 0 0 2 SLC24A4 chr14:92909057 3'AG 92909057 Downstream 15bp
chr14 92909071 92909071 1 + C A LUAD 92909067 + 92909047 92909087 41 TCCTTTCCAGGGGTGTTCATCACCCATGGGGACGTCGGGGT TCCTTTCCAGGGGTGTTCATCACCAATGGGGACGTCGGGGT < 41bp 0.348454688322929 0.74455116349185 0.2828065 0.43011498 prediction 0.4891023269837 Functional Gain - SLC24A4 ENSG00000140090 CDS Human protein_coding chr14:92909067 chr14:92909071 nonsynonymous SNV 0.883 2 25 hm5C_associated_SNPs_109856 0 0 0 0 2 SLC24A4 chr14:92909160 5'GT 92909160 Upstream 90bp
chr3 49020700 49020700 1 + C G HNSC 49020699 + 49020679 49020719 41 GCTGAAAGATTTCCATGACACCTAAGTTGGGATGTGGATGT GCTGAAAGATTTCCATGACACGTAAGTTGGGATGTGGATGT < 41bp 0.446645074116569 0.74454818668815 0.021321476 0.048289686 prediction 0.4890963733763 Functional Gain - ARIH2 ENSG00000177479 CDS Human protein_coding chr3:49020699 chr3:49020700 synonymous SNV . 0 22 hm5C_associated_SNPs_109857 0 0 1 0 1 ARIH2 chr3:49020632 3'AG 49020632 Downstream 69bp
chr22 26706768 26706768 1 + C T UCEC 26706767 + 26706747 26706787 41 CGAGTTCACGTCCGACCAGGCCCGGGCGGCCTCCACCTTCA CGAGTTCACGTCCGACCAGGCTCGGGCGGCCTCCACCTTCA < 41bp 0.51698581459848 0.761532130214629 0.08270395 0.087869376 prediction 0.489092631232298 Functional Gain - SEZ6L ENSG00000100095 CDS Human protein_coding chr22:26706767 chr22:26706768 synonymous SNV . 0 22 hm5C_associated_SNPs_109859 0 0 0 0 1 SEZ6L chr22:26706802 5'GT 26706802 Upstream 35bp
chr16 8900254 8900254 1 + C T SKCM 8900253 + 8900233 8900273 41 TACATTGCGAAAATTAAACTCCCGAAGAAGAGGTGGGTTTG TACATTGCGAAAATTAAACTCTCGAAGAAGAGGTGGGTTTG < 41bp 0.485227702366208 0.744541179559154 0.2799936 0.85172945 prediction 0.489082359118309 Functional Gain - PMM2 ENSG00000140650 CDS Human protein_coding chr16:8900253 chr16:8900254 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_109861 1 0 1 0 2 PMM2 chr16:8900173 3'AG 8900173 Downstream 82bp
chr16 8900254 8900254 1 + C T SKCM 8900253 + 8900233 8900273 41 TACATTGCGAAAATTAAACTCCCGAAGAAGAGGTGGGTTTG TACATTGCGAAAATTAAACTCTCGAAGAAGAGGTGGGTTTG < 41bp 0.485227702366208 0.744541179559154 0.2799936 0.85172945 prediction 0.489082359118309 Functional Gain - PMM2 ENSG00000140650 CDS Human protein_coding chr16:8900253 chr16:8900254 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_109861 1 0 1 0 2 PMM2 chr16:8900264 5'GT 8900264 Upstream 11bp
chr15 90128992 90128992 1 + C T SKCM 90128991 + 90128971 90129011 41 CCCCATCACTGGAGTTATTTCCCCACTCTCTGCCAGTGCTA CCCCATCACTGGAGTTATTTCTCCACTCTCTGCCAGTGCTA < 41bp 0.572477082325329 0.817016439237224 0.1851215 0.92693305 prediction 0.48907871382379 Functional Gain - TICRR ENSG00000140534 CDS Human protein_coding chr15:90128991 chr15:90128992 synonymous SNV . 0 22 hm5C_associated_SNPs_109862 0 0 1 0 1 TICRR chr15:90128939 3'AG 90128939 Downstream 54bp
chr4 57356796 57356796 1 + C T COAD 57356795 + 57356775 57356815 41 CTGCTTACTCACTTGTAGATCCAGAGAAAGCCAAAGCGTAT CTGCTTACTCACTTGTAGATCTAGAGAAAGCCAAAGCGTAT < 41bp 0.507589041859302 0.752119932598887 0.67969835 0.34090042 prediction 0.48906178147917 Functional Gain - SRP72 ENSG00000174780 CDS Human protein_coding chr4:57356795 chr4:57356796 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_109863 0 0 1 0 1 SRP72 chr4:57356734 3'AG 57356734 Downstream 63bp
chr14 24633877 24633877 1 + A G LUAD 24633874 + 24633854 24633894 41 CGGGCGCGTGGTGGGCGAGGCCCAGGTGCAAAGCCTGGATT CGGGCGCGTGGTGGGCGAGGCCCGGGTGCAAAGCCTGGATT < 41bp 0.514037771247732 0.758565779289173 0.81085694 0.86107665 prediction 0.489056016082883 Functional Gain - IRF9 ENSG00000213928 CDS Human protein_coding chr14:24633874 chr14:24633877 nonsynonymous SNV 0.900 0 24 hm5C_associated_SNPs_109864 0 0 1 0 1 IRF9 chr14:24633823 3'AG 24633823 Downstream 55bp
chr1 11073808 11073808 1 + C G rs72870030 11073807 + 11073787 11073827 41 GTCTGAATATATTCGGGTAACCGAAGATGAGAACGATGAGC GTCTGAATATATTCGGGTAACGGAAGATGAGAACGATGAGC < 41bp 0.605501754007698 0.850028510369097 0.616198 0.8771541 prediction 0.489053512722799 Functional Gain - TARDBP ENSG00000120948 CDS Human protein_coding chr1:11073807 chr1:11073808 synonymous SNV . 0 22 hm5C_associated_SNPs_109866 0 0 0 0 1 TARDBP chr1:11073773 3'AG 11073773 Downstream 36bp
chr7 5085889 5085889 1 + C G rs376485971 5085888 + 5085868 5085908 41 CCTGGATTTGCCCCTTAGGCCCGGCCCGGGCCCCTCGGGAG CCTGGATTTGCCCCTTAGGCCGGGCCCGGGCCCCTCGGGAG < 41bp 0.496731151761232 0.744524583165769 0.08052799 0.3943797 prediction 0.489049166331538 Functional Gain - RBAK ENSG00000146587 UTR5 Human protein_coding chr7:5085888 chr7:5085889 . . 0 22 hm5C_associated_SNPs_109867 0 0 1 0 1 RBAK chr7:5085886 3'AG 5085886 Downstream 4bp
chr19 17337875 17337875 1 + C T UCEC 17337874 + 17337854 17337894 41 TGCCAGCCCCAGCCGGGACCCCACAAGGCAAAGACCAAGAA TGCCAGCCCCAGCCGGGACCCTACAAGGCAAAGACCAAGAA < 41bp 0.538383859519843 0.782908189466718 0.12910476 0.92251307 prediction 0.48904865989375 Functional Gain - OCEL1 ENSG00000099330 CDS Human protein_coding chr19:17337874 chr19:17337875 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_109868 0 0 0 0 1 OCEL1 chr19:17337803 3'AG 17337803 Downstream 73bp
chr2 85598595 85598595 1 + C G rs575583374 85598594 + 85598574 85598614 41 AGCCAAGACCCAGTGCATGGCCGAGTCCTCCAGACCATCTA AGCCAAGACCCAGTGCATGGCGGAGTCCTCCAGACCATCTA < 41bp 0.423069139863099 0.744523704699856 0.070940524 0.90229416 prediction 0.489047409399711 Functional Gain - ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598594 chr2:85598595 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_109869 0 0 0 0 1 ELMOD3 chr2:85598563 3'AG 85598563 Downstream 33bp
chr11 114118071 114118071 1 + C A UCEC 114118067 + 114118047 114118087 41 CCTCAAGCATCAGCTGGAGACGCACTATAGGGTGCACACAG CCTCAAGCATCAGCTGGAGACGCAATATAGGGTGCACACAG < 41bp 0.347062134915341 0.744520405739652 0.13076812 0.1441496 prediction 0.489040811479305 Functional Gain - ZBTB16 ENSG00000109906 CDS Human protein_coding chr11:114118067 chr11:114118071 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_109870 0 0 0 0 1 ZBTB16 chr11:114118087 5'GT 114118087 Upstream 17bp
chr3 14964562 14964562 1 + C T STAD 14964561 + 14964541 14964581 41 CTGGGCCTGCAGATCGTGTGCCGGAACTGTTCGCGGAACAA CTGGGCCTGCAGATCGTGTGCTGGAACTGTTCGCGGAACAA < 41bp 0.498616717483741 0.744508484049494 0.22923476 0.21496215 prediction 0.489016968098989 Functional Gain - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14964561 chr3:14964562 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_109872 0 0 0 0 1 FGD5 chr3:14964553 3'AG 14964553 Downstream 10bp
chr17 41343547 41343547 1 + C T SKCM 41343546 + 41343526 41343566 41 CAATCCATGGACTCCAGAGCCCCAAGTCTCCTTTAGGCCGA CAATCCATGGACTCCAGAGCCTCAAGTCTCCTTTAGGCCGA < 41bp 0.566484651787588 0.810971081888356 0.09009996 0.4182619 prediction 0.488972860201536 Functional Gain - NBR1 ENSG00000188554 CDS Human protein_coding chr17:41343546 chr17:41343547 nonsynonymous SNV 0.978 1 22 hm5C_associated_SNPs_109881 0 0 1 0 1 NBR1 chr17:41343598 5'GT 41343598 Upstream 52bp
chr17 72741163 72741163 1 + T C HNSC 72741161 + 72741141 72741181 41 GGGCAGGAGTACGGTGTTCCCTTCCTGGAGACCAGCGCCAA GGGCAGGAGTACGGTGTTCCCTCCCTGGAGACCAGCGCCAA < 41bp 0.469103569611518 0.744479391737741 0.065716 0.3450021 prediction 0.488958783475482 Functional Gain - RAB37 ENSG00000172794 CDS Human protein_coding chr17:72741161 chr17:72741163 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_109883 0 0 0 0 3 RAB37 chr17:72741068 3'AG 72741068 Downstream 96bp
chr17 72741163 72741163 1 + T C HNSC 72741161 + 72741141 72741181 41 GGGCAGGAGTACGGTGTTCCCTTCCTGGAGACCAGCGCCAA GGGCAGGAGTACGGTGTTCCCTCCCTGGAGACCAGCGCCAA < 41bp 0.469103569611518 0.744479391737741 0.065716 0.3450021 prediction 0.488958783475482 Functional Gain - RAB37 ENSG00000172794 CDS Human protein_coding chr17:72741161 chr17:72741163 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_109883 0 0 0 0 3 RAB37 chr17:72741147 3'AG 72741147 Downstream 17bp
chr17 72741163 72741163 1 + T C HNSC 72741161 + 72741141 72741181 41 GGGCAGGAGTACGGTGTTCCCTTCCTGGAGACCAGCGCCAA GGGCAGGAGTACGGTGTTCCCTCCCTGGAGACCAGCGCCAA < 41bp 0.469103569611518 0.744479391737741 0.065716 0.3450021 prediction 0.488958783475482 Functional Gain - RAB37 ENSG00000172794 CDS Human protein_coding chr17:72741161 chr17:72741163 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_109883 0 0 0 0 3 RAB37 chr17:72741223 5'GT 72741223 Upstream 61bp
chr11 61508805 61508805 1 + C T UCEC 61508804 + 61508784 61508824 41 GAGCTGCCGACTGCAGACCACCGCAACAGCAGCGTCAGGTG GAGCTGCCGACTGCAGACCACTGCAACAGCAGCGTCAGGTG < 41bp 0.526522693640962 0.770988267438111 0.16276476 0.35711128 prediction 0.488931147594299 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61508804 chr11:61508805 nonsynonymous SNV 0.925 1 22 hm5C_associated_SNPs_109886 0 0 0 0 1 DAGLA chr11:61508821 5'GT 61508821 Upstream 17bp
chr5 138260270 138260270 1 + C T COAD 138260269 + 138260249 138260289 41 AAGGATGTGGATGGCCTGGACCGCACAGCTGGTGCAATTCG AAGGATGTGGATGGCCTGGACTGCACAGCTGGTGCAATTCG < 41bp 0.543259731370118 0.787724571616068 0.19784367 0.29315266 prediction 0.488929680491901 Functional Gain - CTNNA1 ENSG00000044115 CDS Human protein_coding chr5:138260269 chr5:138260270 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_109887 0 0 1 0 1 CTNNA1 chr5:138260199 3'AG 138260199 Downstream 72bp
chr3 11314036 11314036 1 + T A rs116080632 11314032 + 11314012 11314052 41 TTGCGCACGCGCGCCGCTTCCCAGTGGCAAGCGCGGGCAGG TTGCGCACGCGCGCCGCTTCCCAGAGGCAAGCGCGGGCAGG < 41bp 0.573045367362969 0.817502453995799 0.47956073 0.92014563 prediction 0.48891417326566 Functional Gain - ATG7 ENSG00000197548 UTR5 Human protein_coding chr3:11314032 chr3:11314036 . . 0 25 hm5C_associated_SNPs_109890 0 0 0 0 1 ATG7 chr3:11314116 5'GT 11314116 Upstream 81bp
chr1 180772657 180772657 1 + T C STAD 180772655 + 180772635 180772675 41 AGCCAGTCTTCCACTTGTCCCATGAGGAACGTGTCCAACAT AGCCAGTCTTCCACTTGTCCCACGAGGAACGTGTCCAACAT < 41bp 0.584709591237569 0.829162889250915 0.13958725 0.14315611 prediction 0.488906596026692 Functional Gain - XPR1 ENSG00000143324 CDS Human protein_coding chr1:180772655 chr1:180772657 synonymous SNV . 0 23 hm5C_associated_SNPs_109891 0 0 1 0 1 XPR1 chr1:180772747 5'GT 180772747 Upstream 91bp
chr1 1961521 1961521 1 + C A LUAD 1961520 + 1961500 1961540 41 CAGCGCCGCGTCCCGGGGAACCTGATGGGCTCCTACAGGTC CAGCGCCGCGTCCCGGGGAACATGATGGGCTCCTACAGGTC < 41bp 0.500948185901622 0.745370999833394 0.22371504 0.310112 prediction 0.488845627863542 Functional Gain - GABRD ENSG00000187730 CDS Human protein_coding chr1:1961520 chr1:1961521 nonsynonymous SNV 0.994 2 22 hm5C_associated_SNPs_109894 0 0 0 0 1 GABRD chr1:1961422 3'AG 1961422 Downstream 100bp
chr8 39871135 39871135 1 + C T rs2001923 39871134 + 39871114 39871154 41 GCTGATGTATGAAGGAGTTTCCCAAGAGCCCCTGAAATACT GCTGATGTATGAAGGAGTTTCTCAAGAGCCCCTGAAATACT < 41bp 0.529293475933865 0.773697912514394 0.23922467 0.84300977 prediction 0.488808873161058 Functional Gain - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39871134 chr8:39871135 synonymous SNV . 0 22 hm5C_associated_SNPs_109897 0 0 0 0 2 IDO2 chr8:39871084 3'AG 39871084 Downstream 52bp
chr8 39871135 39871135 1 + C T rs2001923 39871134 + 39871114 39871154 41 GCTGATGTATGAAGGAGTTTCCCAAGAGCCCCTGAAATACT GCTGATGTATGAAGGAGTTTCTCAAGAGCCCCTGAAATACT < 41bp 0.529293475933865 0.773697912514394 0.23922467 0.84300977 prediction 0.488808873161058 Functional Gain - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39871134 chr8:39871135 synonymous SNV . 0 22 hm5C_associated_SNPs_109897 0 0 0 0 2 IDO2 chr8:39871232 5'GT 39871232 Upstream 98bp
chr2 239013340 239013340 1 + C A STAD 239013336 + 239013316 239013356 41 CGCAGTGGCGCCTCCCCACTCTACCTGGCCTGCCAGGAGGG CGCAGTGGCGCCTCCCCACTCTACATGGCCTGCCAGGAGGG < 41bp 0.307723262506039 0.7443984347675 0.20915169 0.93801534 prediction 0.488796869535 Functional Gain - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239013336 chr2:239013340 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_109899 0 0 1 0 1 ESPNL chr2:239013297 3'AG 239013297 Downstream 44bp
chr12 54970398 54970398 1 + C T LUAD 54970397 + 54970377 54970417 41 CTGGATGTGGAAGTGGGAGACCCCAACCCTGATGTGGTCAG CTGGATGTGGAAGTGGGAGACTCCAACCCTGATGTGGTCAG < 41bp 0.562979638067567 0.807364018024828 0.60081476 0.9564395 prediction 0.488768759914522 Functional Gain - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54970397 chr12:54970398 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_109900 0 0 0 0 2 PDE1B chr12:54970355 3'AG 54970355 Downstream 44bp
chr12 54970398 54970398 1 + C T LUAD 54970397 + 54970377 54970417 41 CTGGATGTGGAAGTGGGAGACCCCAACCCTGATGTGGTCAG CTGGATGTGGAAGTGGGAGACTCCAACCCTGATGTGGTCAG < 41bp 0.562979638067567 0.807364018024828 0.60081476 0.9564395 prediction 0.488768759914522 Functional Gain - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54970397 chr12:54970398 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_109900 0 0 0 0 2 PDE1B chr12:54970485 5'GT 54970485 Upstream 88bp
chr13 114541145 114541145 1 + C A UCEC 114541144 + 114541124 114541164 41 CTGGAGGCAGCCCCCGTTCTCCTGGCTGCATTCGTTGACAT CTGGAGGCAGCCCCCGTTCTCATGGCTGCATTCGTTGACAT < 41bp 0.543550567303549 0.787924917394662 0.8281394 0.9085367 prediction 0.488748700182226 Functional Gain - GAS6 ENSG00000183087 CDS Human protein_coding chr13:114541144 chr13:114541145 nonsynonymous SNV 0.104 1 22 hm5C_associated_SNPs_109904 0 0 0 0 2 GAS6 chr13:114541050 3'AG 114541050 Downstream 96bp
chr13 114541145 114541145 1 + C A UCEC 114541144 + 114541124 114541164 41 CTGGAGGCAGCCCCCGTTCTCCTGGCTGCATTCGTTGACAT CTGGAGGCAGCCCCCGTTCTCATGGCTGCATTCGTTGACAT < 41bp 0.543550567303549 0.787924917394662 0.8281394 0.9085367 prediction 0.488748700182226 Functional Gain - GAS6 ENSG00000183087 CDS Human antisense chr13:114541144 chr13:114541145 nonsynonymous SNV 0.104 1 22 hm5C_associated_SNPs_109904 0 0 0 0 2 GAS6-AS1 chr13:114541220 5'GT 114541220 Upstream 76bp
chr6 53764678 53764678 1 + C T UCEC 53764677 + 53764657 53764697 41 AGAACTTATTAGAAACGATTCCGGATGGCATTGGTAAGCAT AGAACTTATTAGAAACGATTCTGGATGGCATTGGTAAGCAT < 41bp 0.509643678013294 0.754017346309823 0.20985407 0.35498244 prediction 0.488747336593058 Functional Gain - LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53764677 chr6:53764678 nonsynonymous SNV 0.826 4 22 hm5C_associated_SNPs_109905 0 0 0 0 1 LRRC1 chr6:53764689 5'GT 53764689 Upstream 12bp
chr19 17895614 17895614 1 + A G UCEC 17895611 + 17895591 17895631 41 GGAGCCACCCTCACCCAGGTCTCAGTGGAGTACGGCTACCG GGAGCCACCCTCACCCAGGTCTCGGTGGAGTACGGCTACCG < 41bp 0.5038499216755 0.748223574055872 0.20025033 0.25806215 prediction 0.488747304760744 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17895611 chr19:17895614 synonymous SNV . 0 24 hm5C_associated_SNPs_109906 0 0 1 0 1 FCHO1 chr19:17895534 3'AG 17895534 Downstream 81bp
chr6 43106993 43106993 1 + C T SKCM 43106992 + 43106972 43107012 41 CGGCAGCATCGAGGCGCAAGCCCGTGTCCAAGTGCTGGGTG CGGCAGCATCGAGGCGCAAGCTCGTGTCCAAGTGCTGGGTG < 41bp 0.506830987236492 0.751199852839314 0.34728372 0.2989231 prediction 0.488737731205644 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43106992 chr6:43106993 synonymous SNV . 0 22 hm5C_associated_SNPs_109907 0 0 1 0 1 PTK7 chr6:43107009 5'GT 43107009 Upstream 17bp
chr9 116185686 116185686 1 + C T UCEC 116185685 + 116185665 116185705 41 ACCAGGGATGATCGTGCCTCCCCCAACCCCAGTGCAATTGT ACCAGGGATGATCGTGCCTCCTCCAACCCCAGTGCAATTGT < 41bp 0.469709311351618 0.74436746017547 0.066028774 0.9523597 prediction 0.488734920350939 Functional Gain - C9orf43 ENSG00000157653 CDS Human protein_coding chr9:116185685 chr9:116185686 synonymous SNV . 0 22 hm5C_associated_SNPs_109908 0 0 0 0 2 C9orf43 chr9:116185606 3'AG 116185606 Downstream 81bp
chr9 116185686 116185686 1 + C T UCEC 116185685 + 116185665 116185705 41 ACCAGGGATGATCGTGCCTCCCCCAACCCCAGTGCAATTGT ACCAGGGATGATCGTGCCTCCTCCAACCCCAGTGCAATTGT < 41bp 0.469709311351618 0.74436746017547 0.066028774 0.9523597 prediction 0.488734920350939 Functional Gain - C9orf43 ENSG00000157653 CDS Human protein_coding chr9:116185685 chr9:116185686 synonymous SNV . 0 22 hm5C_associated_SNPs_109908 0 0 0 0 2 C9orf43 chr9:116185778 5'GT 116185778 Upstream 93bp
chr7 6193464 6193464 1 + T G rs61732616 6193461 + 6193441 6193481 41 TGGCAGCCCCGCCGCCGAATCCCTGGAGGAGCCAGATGCGG TGGCAGCCCCGCCGCCGAATCCCGGGAGGAGCCAGATGCGG < 41bp 0.347333691404996 0.744351434426552 0.28207144 0.8598213 prediction 0.488702868853104 Functional Gain - USP42 ENSG00000106346 CDS Human protein_coding chr7:6193461 chr7:6193464 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_109910 0 0 1 0 1 USP42 chr7:6193387 3'AG 6193387 Downstream 78bp
chr15 100214652 100214652 1 + C T SKCM 100214651 + 100214631 100214671 41 GTCACAGTTCCAGTGACCAGCCCCAATGCTTTGTCCTACAC GTCACAGTTCCAGTGACCAGCTCCAATGCTTTGTCCTACAC < 41bp 0.576591404514897 0.820937054585806 0.07899633 0.91764617 prediction 0.488691300141818 Functional Gain - MEF2A ENSG00000068305 CDS Human protein_coding chr15:100214651 chr15:100214652 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_109911 0 0 1 0 1 MEF2A chr15:100214598 3'AG 100214598 Downstream 55bp
chr11 114113012 114113012 1 + C A LUSC 114113008 + 114112988 114113028 41 ACATCTGCAGTGAGTGCAACCGCACCTTCCCCAGCCACACG ACATCTGCAGTGAGTGCAACCGCAACTTCCCCAGCCACACG < 41bp 0.354449932137914 0.74434166947939 0.090845406 0.21564603 prediction 0.48868333895878 Functional Gain - ZBTB16 ENSG00000109906 CDS Human protein_coding chr11:114113008 chr11:114113012 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_109912 0 0 0 0 1 ZBTB16 chr11:114113059 5'GT 114113059 Upstream 48bp
chr6 53517037 53517037 1 - A T LUSC 53517041 - 53517021 53517061 41 CTGAGCGTGTTCAACGGGCTCGTGTACGCCGCGGGCGGCCG CTGAGCGTGTTCAACGGGCTCGTGAACGCCGCGGGCGGCCG < 41bp 0.615966166919657 0.860307538590011 0.10055971 0.19931728 prediction 0.488682743340706 Functional Gain - KLHL31 ENSG00000124743 CDS Human protein_coding chr6:53517041 chr6:53517037 nonsynonymous SNV 0.979 5 25 hm5C_associated_SNPs_109913 0 0 0 0 1 KLHL31 chr6:53517128 3'AG 53517128 Downstream 92bp
chr1 151237991 151237991 1 + C T BLCA 151237990 + 151237970 151238010 41 CTGATGCTCTCATCAGTTCTCCGATTTTGGCTGGTGAAGGT CTGATGCTCTCATCAGTTCTCTGATTTTGGCTGGTGAAGGT < 41bp 0.499097449539356 0.744338812543208 0.3702106 0.2542924 prediction 0.488677625086415 Functional Gain - PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151237990 chr1:151237991 nonsynonymous SNV 0.978 4 22 hm5C_associated_SNPs_109915 0 0 1 0 1 PSMD4 chr1:151238085 5'GT 151238085 Upstream 95bp
chr4 74702957 74702957 1 + C T SKCM 74702956 + 74702936 74702976 41 GGGAAGCAAGTTTGTCTGGACCCGGAAGCCCCTTTTCTAAA GGGAAGCAAGTTTGTCTGGACTCGGAAGCCCCTTTTCTAAA < 41bp 0.512496243033777 0.756833353415557 0.046937406 0.08597559 prediction 0.48867422076356 Functional Gain - CXCL6 ENSG00000124875 CDS Human protein_coding chr4:74702956 chr4:74702957 nonsynonymous SNV 0.030 4 22 hm5C_associated_SNPs_109916 0 0 0 0 2 CXCL6 chr4:74702920 3'AG 74702920 Downstream 38bp
chr4 74702957 74702957 1 + C T SKCM 74702956 + 74702936 74702976 41 GGGAAGCAAGTTTGTCTGGACCCGGAAGCCCCTTTTCTAAA GGGAAGCAAGTTTGTCTGGACTCGGAAGCCCCTTTTCTAAA < 41bp 0.512496243033777 0.756833353415557 0.046937406 0.08597559 prediction 0.48867422076356 Functional Gain - CXCL6 ENSG00000124875 CDS Human protein_coding chr4:74702956 chr4:74702957 nonsynonymous SNV 0.030 4 22 hm5C_associated_SNPs_109916 0 0 0 0 2 CXCL6 chr4:74703003 5'GT 74703003 Upstream 47bp
chr22 21988388 21988388 1 + C T LGG 21988387 + 21988367 21988407 41 CCGTGTGCCACACCCACCATCCACATGTGGCAGCTCAGCAC CCGTGTGCCACACCCACCATCTACATGTGGCAGCTCAGCAC < 41bp 0.501085454754118 0.745421500759497 0.34803897 0.9189745 prediction 0.488672092010758 Functional Gain - CCDC116 ENSG00000161180 CDS Human protein_coding chr22:21988387 chr22:21988388 synonymous SNV . 0 22 hm5C_associated_SNPs_109917 0 0 0 0 1 CCDC116 chr22:21988311 3'AG 21988311 Downstream 78bp
chr21 42694963 42694963 1 + C G rs528828387 42694959 + 42694939 42694979 41 CTGTCCAGTGCTGCCTATAGCATCCGCAGCATCGGGGAGAG CTGTCCAGTGCTGCCTATAGCATCGGCAGCATCGGGGAGAG < 41bp 0.452834109057101 0.744333738615272 0.05946541 0.28507915 prediction 0.488667477230545 Functional Gain - FAM3B ENSG00000183844 CDS Human protein_coding chr21:42694959 chr21:42694963 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_109919 0 0 1 0 1 FAM3B chr21:42694993 5'GT 42694993 Upstream 31bp
chr2 159526282 159526282 1 + C T UCEC 159526281 + 159526261 159526301 41 CGGCTCCCCGGCGGCAATGGCCCCAGTGTCTTGTCTGATGA CGGCTCCCCGGCGGCAATGGCTCCAGTGTCTTGTCTGATGA < 41bp 0.578797217385752 0.82311238331158 0.16008532 0.9096129 prediction 0.488630331851656 Functional Gain - PKP4 ENSG00000144283 CDS Human protein_coding chr2:159526281 chr2:159526282 nonsynonymous SNV 0.882 1 22 hm5C_associated_SNPs_109922 0 0 1 0 1 PKP4 chr2:159526232 3'AG 159526232 Downstream 51bp
chr1 39987213 39987213 1 + C T COAD 39987212 + 39987192 39987232 41 CGAAGAAAAGCAACGAGCTGCCGCAGGCCAACCGACTCCCA CGAAGAAAAGCAACGAGCTGCTGCAGGCCAACCGACTCCCA < 41bp 0.498441841770996 0.744314632031023 0.3291664 0.41577446 prediction 0.488629264062046 Functional Gain - BMP8A ENSG00000183682 CDS Human protein_coding chr1:39987212 chr1:39987213 nonsynonymous SNV 0.909 2 22 hm5C_associated_SNPs_109923 0 0 0 0 1 BMP8A chr1:39987242 5'GT 39987242 Upstream 30bp
chr6 36449352 36449352 1 + T C UCEC 36449350 + 36449330 36449370 41 TCTCTGCAGGTGCTTTACTCCATGAACTGTCTAATGACGGT TCTCTGCAGGTGCTTTACTCCACGAACTGTCTAATGACGGT < 41bp 0.585681972631954 0.829995535276406 0.013446003 0.021701336 prediction 0.488627125288904 Functional Gain - KCTD20 ENSG00000112078 CDS Human protein_coding chr6:36449350 chr6:36449352 stoploss . 0 23 hm5C_associated_SNPs_109925 0 0 1 0 1 KCTD20 chr6:36449339 3'AG 36449339 Downstream 14bp
chr21 44592193 44592193 1 + T A SKCM 44592189 + 44592169 44592209 41 CACCCTCTCCAGGACGACCACGGCTACATTTCCCGTGAGTT CACCCTCTCCAGGACGACCACGGCAACATTTCCCGTGAGTT < 41bp 0.433980692452581 0.744310510157052 0.5578657 0.8135632 prediction 0.488621020314103 Functional Gain - CRYAA;LOC102724652 ENSG00000160202 CDS Human protein_coding chr21:44592189 chr21:44592193 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_109926 0 0 0 0 1 CRYAA;LOC102724652 chr21:44592181 3'AG 44592181 Downstream 13bp
chr17 72350369 72350369 1 + C G LUSC 72350368 + 72350348 72350388 41 GCCCGGCGGCGCTCGCGGGCCCTGGGAACCGAGGGGCGACA GCCCGGCGGCGCTCGCGGGCCGTGGGAACCGAGGGGCGACA < 41bp 0.419835747883326 0.744310012889875 0.4102132 0.87455726 prediction 0.48862002577975 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72350368 chr17:72350369 nonsynonymous SNV 0.470 0 22 hm5C_associated_SNPs_109927 0 0 0 0 1 KIF19 chr17:72350301 3'AG 72350301 Downstream 69bp
chr19 55174498 55174498 1 + T A rs28366008 55174494 + 55174474 55174514 41 GGAGGAGACGCCATGATCCCCACCTTCACGGCTCTGCTCTG GGAGGAGACGCCATGATCCCCACCATCACGGCTCTGCTCTG < 41bp 0.43049454186772 0.744287632720269 0.017743826 0.06815535 prediction 0.488575265440538 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55174494 chr19:55174498 nonsynonymous SNV 0.003 1 25 hm5C_associated_SNPs_109930 0 0 0 0 1 LILRB4 chr19:55174519 5'GT 55174519 Upstream 22bp
chr14 101195281 101195281 1 + C A LUAD 101195280 + 101195260 101195300 41 CCACCCATTGCAGGTGCCAGCCTGGCTGGCAGGGTCCCCTT CCACCCATTGCAGGTGCCAGCATGGCTGGCAGGGTCCCCTT < 41bp 0.547884160477433 0.792149295587378 0.3414917 0.58648086 prediction 0.488530270219891 Functional Gain - DLK1 ENSG00000185559 CDS Human protein_coding chr14:101195280 chr14:101195281 nonsynonymous SNV 0.970 3 22 hm5C_associated_SNPs_109933 0 0 1 0 1 DLK1 chr14:101195273 3'AG 101195273 Downstream 9bp
chr16 29108490 29108490 1 + C G LUAD 29108486 + 29108466 29108506 41 TGCCTAGATCTTTTGGTTAACTGGCTGCACATATACCTTAA TGCCTAGATCTTTTGGTTAACTGGGTGCACATATACCTTAA < 41bp 0.453077401835806 0.744261811892349 0.23821607 0.8254447 prediction 0.488523623784697 Functional Gain - RRN3P2 ENSG00000103472 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:29108486 chr16:29108490 . . 0 25 hm5C_associated_SNPs_109934 0 0 0 0 1 RRN3P2 chr16:29108453 3'AG 29108453 Downstream 38bp
chr12 97334303 97334303 1 + C A LUAD 97334299 + 97334279 97334319 41 AGTAGTTTAGGTGACATGTTCTCACCTATCAGAGATGGTAA AGTAGTTTAGGTGACATGTTCTCAACTATCAGAGATGGTAA < 41bp 0.319578347501781 0.744254053343916 0.055766612 0.043823183 prediction 0.488508106687833 Functional Gain - NEDD1 ENSG00000139350 CDS Human protein_coding chr12:97334299 chr12:97334303 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_109936 0 0 1 0 1 NEDD1 chr12:97334315 5'GT 97334315 Upstream 13bp
chr1 19981608 19981608 1 + C T SKCM 19981607 + 19981587 19981627 41 ATCAACAAGCTGGCACTGTTCCCAGATAAGAGTGCCTGGTG ATCAACAAGCTGGCACTGTTCTCAGATAAGAGTGCCTGGTG < 41bp 0.530746677202494 0.774991773800765 0.09588799 0.108896196 prediction 0.488490193196543 Functional Gain - MINOS1-NBL1;NBL1 ENSG00000158747;ENSG00000270136 CDS Human other chr1:19981607 chr1:19981608 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_109938 0 0 0 0 1 MINOS1-NBL1;NBL1 chr1:19981693 5'GT 19981693 Upstream 86bp
chr12 69090669 69090669 1 + T C rs149960020 69090667 + 69090647 69090687 41 CTTCGAGTACAGTTTTTGATCTTGTGGAAGAGTATGAAAAC CTTCGAGTACAGTTTTTGATCTCGTGGAAGAGTATGAAAAC < 41bp 0.459066408826147 0.74424103279648 0.08741629 0.17483091 prediction 0.48848206559296 Functional Gain - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69090667 chr12:69090669 synonymous SNV . 0 23 hm5C_associated_SNPs_109939 0 0 1 0 2 NUP107 chr12:69090599 3'AG 69090599 Downstream 71bp
chr12 69090669 69090669 1 + T C rs149960020 69090667 + 69090647 69090687 41 CTTCGAGTACAGTTTTTGATCTTGTGGAAGAGTATGAAAAC CTTCGAGTACAGTTTTTGATCTCGTGGAAGAGTATGAAAAC < 41bp 0.459066408826147 0.74424103279648 0.08741629 0.17483091 prediction 0.48848206559296 Functional Gain - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69090667 chr12:69090669 synonymous SNV . 0 23 hm5C_associated_SNPs_109939 0 0 1 0 2 NUP107 chr12:69090702 5'GT 69090702 Upstream 34bp
chr9 133952676 133952676 1 + A G STAD 133952673 + 133952653 133952693 41 GCCACCGTGCAGCAAGTTGGCGCAGATACAGCCCCGTACCT GCCACCGTGCAGCAAGTTGGCGCGGATACAGCCCCGTACCT < 41bp 0.499866642784208 0.744228536799642 0.278674 0.43530208 prediction 0.488457073599284 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133952673 chr9:133952676 synonymous SNV . 0 24 hm5C_associated_SNPs_109941 0 0 0 0 1 LAMC3 chr9:133952721 5'GT 133952721 Upstream 46bp
chr12 1740581 1740581 1 + A G UCS 1740578 + 1740558 1740598 41 TGTCCAGCTGGGCTCAGCTTCTGACAGACGCCAACTCCTGG TGTCCAGCTGGGCTCAGCTTCTGGCAGACGCCAACTCCTGG < 41bp 0.503912942152065 0.7481408533138 0.2861597 0.4924281 prediction 0.48845582232347 Functional Gain - WNT5B ENSG00000111186 CDS Human protein_coding chr12:1740578 chr12:1740581 nonsynonymous SNV 0.483 0 24 hm5C_associated_SNPs_109942 0 0 0 0 1 WNT5B chr12:1740600 5'GT 1740600 Upstream 20bp
chr1 150300844 150300844 1 + C T HNSC 150300843 + 150300823 150300863 41 AGTAAAGAAGCGACGAATACCCCGTTTTGAGGAGGTGGAAG AGTAAAGAAGCGACGAATACCTCGTTTTGAGGAGGTGGAAG < 41bp 0.515451443297662 0.759678728385633 0.011362523 0.023168802 prediction 0.488454570175942 Functional Gain - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150300843 chr1:150300844 synonymous SNV . 0 22 hm5C_associated_SNPs_109943 0 0 1 0 2 PRPF3 chr1:150300779 3'AG 150300779 Downstream 66bp
chr1 150300844 150300844 1 + C T HNSC 150300843 + 150300823 150300863 41 AGTAAAGAAGCGACGAATACCCCGTTTTGAGGAGGTGGAAG AGTAAAGAAGCGACGAATACCTCGTTTTGAGGAGGTGGAAG < 41bp 0.515451443297662 0.759678728385633 0.011362523 0.023168802 prediction 0.488454570175942 Functional Gain - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150300843 chr1:150300844 synonymous SNV . 0 22 hm5C_associated_SNPs_109943 0 0 1 0 2 PRPF3 chr1:150300925 5'GT 150300925 Upstream 82bp
chr15 41864746 41864746 1 + T A rs142941924 41864742 + 41864722 41864762 41 ATGCCTTCCTGCTCGCCTCCCGGATTGGGGAGAACCCCTTT ATGCCTTCCTGCTCGCCTCCCGGAATGGGGAGAACCCCTTT < 41bp 0.418319757894382 0.744217178737524 0.4242515 0.26143235 prediction 0.488434357475048 Functional Gain - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41864742 chr15:41864746 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_109945 0 0 0 0 1 TYRO3 chr15:41864762 5'GT 41864762 Upstream 17bp
chr19 50906396 50906396 1 + C A UCEC 50906395 + 50906375 50906415 41 GAGCCGGAGCCCTTCCTACGCCTGGCGCTCACCCTGCGGCC GAGCCGGAGCCCTTCCTACGCATGGCGCTCACCCTGCGGCC < 41bp 0.507564749501198 0.751781632013936 0.474503 0.56801516 prediction 0.488433765025477 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906395 chr19:50906396 nonsynonymous SNV 0.619 1 22 hm5C_associated_SNPs_109946 0 0 1 0 2 POLD1 chr19:50906310 3'AG 50906310 Downstream 87bp
chr19 50906396 50906396 1 + C A UCEC 50906395 + 50906375 50906415 41 GAGCCGGAGCCCTTCCTACGCCTGGCGCTCACCCTGCGGCC GAGCCGGAGCCCTTCCTACGCATGGCGCTCACCCTGCGGCC < 41bp 0.507564749501198 0.751781632013936 0.474503 0.56801516 prediction 0.488433765025477 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906395 chr19:50906396 nonsynonymous SNV 0.619 1 22 hm5C_associated_SNPs_109946 0 0 1 0 2 POLD1 chr19:50906476 5'GT 50906476 Upstream 81bp
chr11 118252126 118252126 1 - G T LUAD 118252127 - 118252107 118252147 41 GGAGAAAAATGAGAAAATCACCCAGGTTATCTGCAAAAAAT GGAGAAAAATGAGAAAATCACACAGGTTATCTGCAAAAAAT < 41bp 0.510071434675518 0.754283215391979 0.07447505 0.060046732 prediction 0.488423561432922 Functional Gain - UBE4A ENSG00000110344 CDS Human protein_coding chr11:118252127 chr11:118252126 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_109947 0 0 0 0 1 UBE4A chr11:118252222 3'AG 118252222 Downstream 97bp
chr3 183777710 183777710 1 + C A LUAD 183777709 + 183777689 183777729 41 GCACGTGGCCACCACCCAGCCCCCACCCATGCCTAGGTGGC GCACGTGGCCACCACCCAGCCACCACCCATGCCTAGGTGGC < 41bp 0.492279756040937 0.744206445437622 0.03299287 0.041463614 prediction 0.488412890875245 Functional Gain - HTR3C ENSG00000178084 CDS Human protein_coding chr3:183777709 chr3:183777710 synonymous SNV . 0 22 hm5C_associated_SNPs_109949 0 0 0 0 1 HTR3C chr3:183777616 3'AG 183777616 Downstream 95bp
chr3 51671476 51671476 1 + C G BLCA 51671475 + 51671455 51671495 41 GACGTCCGCCTCATGCGGTACCGGAGCCATGTCCTGCACAG GACGTCCGCCTCATGCGGTACGGGAGCCATGTCCTGCACAG < 41bp 0.592490297969794 0.836684285448093 0.7867265 0.29965085 prediction 0.488387974956598 Functional Gain - RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51671475 chr3:51671476 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_109952 0 0 1 0 1 RAD54L2 chr3:51671519 5'GT 51671519 Upstream 44bp
chr11 60640753 60640753 1 + A G UCEC 60640750 + 60640730 60640770 41 GCCCCCTGCGGCTTGAGCTGCGGATTGCCAAAGGTATGCTA GCCCCCTGCGGCTTGAGCTGCGGGTTGCCAAAGGTATGCTA < 41bp 0.502999779578442 0.747191881394467 0.2854131 0.7166034 prediction 0.488384203632051 Functional Gain - ZP1 ENSG00000149506 CDS Human protein_coding chr11:60640750 chr11:60640753 nonsynonymous SNV 0.013 2 24 hm5C_associated_SNPs_109953 0 0 0 0 1 ZP1 chr11:60640762 5'GT 60640762 Upstream 10bp
chr11 94352980 94352980 1 + C A rs561220038 94352979 + 94352959 94352999 41 GTGCATGCCACGATTCTTTACCGAAATGAACCGCACTGTAC GTGCATGCCACGATTCTTTACAGAAATGAACCGCACTGTAC < 41bp 0.480050910836892 0.744190682806773 0.37486464 0.29482895 prediction 0.488381365613546 Functional Gain - PIWIL4 ENSG00000134627 CDS Human protein_coding chr11:94352979 chr11:94352980 synonymous SNV . 0 22 hm5C_associated_SNPs_109955 0 0 0 0 1 PIWIL4 chr11:94352926 3'AG 94352926 Downstream 55bp
chr17 45677071 45677071 1 + C G rs79778933 45677070 + 45677050 45677090 41 TGACAGATTATTGAGGTTGTCCCAAAAGAAGTTCTGTGCTG TGACAGATTATTGAGGTTGTCGCAAAAGAAGTTCTGTGCTG < 41bp 0.437920823376532 0.744188216473606 0.18456775 0.33983248 prediction 0.488376432947211 Functional Gain - NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45677070 chr17:45677071 synonymous SNV . 0 22 hm5C_associated_SNPs_109956 0 0 1 0 2 NPEPPS chr17:45677042 3'AG 45677042 Downstream 30bp
chr17 45677071 45677071 1 + C G rs79778933 45677070 + 45677050 45677090 41 TGACAGATTATTGAGGTTGTCCCAAAAGAAGTTCTGTGCTG TGACAGATTATTGAGGTTGTCGCAAAAGAAGTTCTGTGCTG < 41bp 0.437920823376532 0.744188216473606 0.18456775 0.33983248 prediction 0.488376432947211 Functional Gain - NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45677070 chr17:45677071 synonymous SNV . 0 22 hm5C_associated_SNPs_109956 0 0 1 0 2 NPEPPS chr17:45677105 5'GT 45677105 Upstream 35bp
chrX 64721755 64721755 1 + C T LGG 64721754 + 64721734 64721774 41 CGTTCGGTGGCTGATGAGCTCCGCATCAGTGCCAAACTGTC CGTTCGGTGGCTGATGAGCTCTGCATCAGTGCCAAACTGTC < 41bp 0.504171239476211 0.748354348850122 0.074017346 0.124423444 prediction 0.488366218747821 Functional Gain - ZC3H12B ENSG00000102053 CDS Human protein_coding chrX:64721754 chrX:64721755 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_109957 0 0 0 0 1 ZC3H12B chrX:64721669 3'AG 64721669 Downstream 87bp
chr5 72359713 72359713 1 + C T UCEC 72359712 + 72359692 72359732 41 TAGGCACCATTGTCCCACCTCCGAGGCCTGCTTCCAGACCA TAGGCACCATTGTCCCACCTCTGAGGCCTGCTTCCAGACCA < 41bp 0.517695847098775 0.761875586966513 0.77830106 0.2869341 prediction 0.488359479735476 Functional Gain - FCHO2 ENSG00000157107 CDS Human protein_coding chr5:72359712 chr5:72359713 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_109959 0 0 1 0 2 FCHO2 chr5:72359668 3'AG 72359668 Downstream 46bp
chr5 72359713 72359713 1 + C T UCEC 72359712 + 72359692 72359732 41 TAGGCACCATTGTCCCACCTCCGAGGCCTGCTTCCAGACCA TAGGCACCATTGTCCCACCTCTGAGGCCTGCTTCCAGACCA < 41bp 0.517695847098775 0.761875586966513 0.77830106 0.2869341 prediction 0.488359479735476 Functional Gain - FCHO2 ENSG00000157107 CDS Human protein_coding chr5:72359712 chr5:72359713 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_109959 0 0 1 0 2 FCHO2 chr5:72359771 5'GT 72359771 Upstream 59bp
chr17 73222192 73222192 1 + T C UCEC 73222190 + 73222170 73222210 41 GGTGAGAGCAGCCCAGAACCCCTGGACAACATCTTGTTGGC GGTGAGAGCAGCCCAGAACCCCCGGACAACATCTTGTTGGC < 41bp 0.456453817367629 0.74417123236836 0.25881782 0.335209 prediction 0.488342464736719 Functional Gain - NUP85 ENSG00000125450 CDS Human protein_coding chr17:73222190 chr17:73222192 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_109960 0 0 1 0 2 NUP85 chr17:73222146 3'AG 73222146 Downstream 47bp
chr17 73222192 73222192 1 + T C UCEC 73222190 + 73222170 73222210 41 GGTGAGAGCAGCCCAGAACCCCTGGACAACATCTTGTTGGC GGTGAGAGCAGCCCAGAACCCCCGGACAACATCTTGTTGGC < 41bp 0.456453817367629 0.74417123236836 0.25881782 0.335209 prediction 0.488342464736719 Functional Gain - NUP85 ENSG00000125450 CDS Human protein_coding chr17:73222190 chr17:73222192 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_109960 0 0 1 0 2 NUP85 chr17:73222252 5'GT 73222252 Upstream 61bp
chr5 36677225 36677225 1 + C A UCEC 36677224 + 36677204 36677244 41 ATGAAGGAACAGGGGCAGGCCCTGAGAGAGTTCTTTGATTC ATGAAGGAACAGGGGCAGGCCATGAGAGAGTTCTTTGATTC < 41bp 0.512431929910108 0.756599260500409 0.19710162 0.3168811 prediction 0.488334661180602 Functional Gain - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36677224 chr5:36677225 nonsynonymous SNV 0.891 3 22 hm5C_associated_SNPs_109964 0 0 0 0 1 SLC1A3 chr5:36677286 5'GT 36677286 Upstream 62bp
chr1 47583536 47583536 1 + C T SKCM 47583535 + 47583515 47583555 41 CTCCAGACCACTCAAGGCCTCCCCAGCCTGTTCGTCAAGTT CTCCAGACCACTCAAGGCCTCTCCAGCCTGTTCGTCAAGTT < 41bp 0.51776765556526 0.761933911996457 0.016747534 0.66524476 prediction 0.488332512862394 Functional Gain - CYP4Z1 ENSG00000186160 CDS Human protein_coding chr1:47583535 chr1:47583536 nonsynonymous SNV 0.009 0 22 hm5C_associated_SNPs_109965 0 0 0 0 1 CYP4Z1 chr1:47583438 3'AG 47583438 Downstream 99bp
chrX 16761894 16761894 1 + C T LUAD 16761893 + 16761873 16761913 41 TCGACTTTGATCAGATGTACCCCGTGGCCCTGGTCATGCTC TCGACTTTGATCAGATGTACCTCGTGGCCCTGGTCATGCTC < 41bp 0.526465987506518 0.770630557613929 0.029410064 0.043791175 prediction 0.488329140214823 Functional Gain - SYAP1 ENSG00000169895 CDS Human protein_coding chrX:16761893 chrX:16761894 nonsynonymous SNV 0.856 4 22 hm5C_associated_SNPs_109966 0 0 1 0 2 SYAP1 chrX:16761824 3'AG 16761824 Downstream 71bp
chrX 16761894 16761894 1 + C T LUAD 16761893 + 16761873 16761913 41 TCGACTTTGATCAGATGTACCCCGTGGCCCTGGTCATGCTC TCGACTTTGATCAGATGTACCTCGTGGCCCTGGTCATGCTC < 41bp 0.526465987506518 0.770630557613929 0.029410064 0.043791175 prediction 0.488329140214823 Functional Gain - SYAP1 ENSG00000169895 CDS Human protein_coding chrX:16761893 chrX:16761894 nonsynonymous SNV 0.856 4 22 hm5C_associated_SNPs_109966 0 0 1 0 2 SYAP1 chrX:16761963 5'GT 16761963 Upstream 70bp
chr19 7710134 7710134 1 + C A rs141309384 7710130 + 7710110 7710150 41 TGATCCAGCATGCCAATGTACAGGCGCACAGCAGCCTCATC TGATCCAGCATGCCAATGTACAGGAGCACAGCAGCCTCATC < 41bp 0.682931898245187 0.927090411605983 0.78367746 0.7082665 prediction 0.488317026721593 Functional Gain - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7710130 chr19:7710134 nonsynonymous SNV 0.558 0 25 hm5C_associated_SNPs_109968 0 0 0 2 2 STXBP2 chr19:7710083 3'AG 7710083 Downstream 52bp
chr19 7710134 7710134 1 + C A rs141309384 7710130 + 7710110 7710150 41 TGATCCAGCATGCCAATGTACAGGCGCACAGCAGCCTCATC TGATCCAGCATGCCAATGTACAGGAGCACAGCAGCCTCATC < 41bp 0.682931898245187 0.927090411605983 0.78367746 0.7082665 prediction 0.488317026721593 Functional Gain - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7710130 chr19:7710134 nonsynonymous SNV 0.558 0 25 hm5C_associated_SNPs_109968 0 0 0 2 2 STXBP2 chr19:7710192 5'GT 7710192 Upstream 59bp
chr19 45974075 45974075 1 + C T SKCM 45974074 + 45974054 45974094 41 CATGCCGGGAACCAGCTACTCCACACCAGGCATGAGTGGCT CATGCCGGGAACCAGCTACTCTACACCAGGCATGAGTGGCT < 41bp 0.52941890391566 0.773568034673864 0.5078562 0.783345 prediction 0.488298261516408 Functional Gain - FOSB ENSG00000125740 CDS Human protein_coding chr19:45974074 chr19:45974075 synonymous SNV . 0 22 hm5C_associated_SNPs_109969 0 0 0 0 1 FOSB chr19:45974004 3'AG 45974004 Downstream 72bp
chr1 66713196 66713196 1 + C G rs75398902 66713192 + 66713172 66713212 41 GTCGGAGTCCACTGGATCCCCAGGCCAGCTCTTCCGCTGGG GTCGGAGTCCACTGGATCCCCAGGGCAGCTCTTCCGCTGGG < 41bp 0.575392457667583 0.819540279929078 0.82155895 0.92950886 prediction 0.488295644522989 Functional Gain - PDE4B ENSG00000184588 CDS Human protein_coding chr1:66713192 chr1:66713196 nonsynonymous SNV 0.949 1 25 hm5C_associated_SNPs_109970 0 0 0 0 1 PDE4B chr1:66713143 3'AG 66713143 Downstream 54bp
chr1 9711820 9711820 1 + C G rs369737325 9711816 + 9711796 9711836 41 CCCAGCGCAGTCGCTCCGAGCGGCCGCGAGCAGAGCCGCCC CCCAGCGCAGTCGCTCCGAGCGGCGGCGAGCAGAGCCGCCC < 41bp 0.577353579739124 0.821492794035825 0.5367478 0.90107125 prediction 0.488278428593401 Functional Gain - PIK3CD ENSG00000171608 UTR5 Human protein_coding chr1:9711816 chr1:9711820 . . 0 25 hm5C_associated_SNPs_109974 0 0 1 0 1 PIK3CD chr1:9711860 5'GT 9711860 Upstream 41bp
chr1 156354353 156354353 1 + C A LUSC 156354352 + 156354332 156354372 41 CTACCCTTTCTGGACTCCCCCCCCAGACTCCCAGCACTACG CTACCCTTTCTGGACTCCCCCACCAGACTCCCAGCACTACG < 41bp 0.490122318565052 0.744121575911786 0.0070866942 0.02303946 prediction 0.488243151823572 Functional Gain - RHBG ENSG00000132677 CDS Human protein_coding chr1:156354352 chr1:156354353 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_109979 0 0 1 0 2 RHBG chr1:156354318 3'AG 156354318 Downstream 36bp
chr1 156354353 156354353 1 + C A LUSC 156354352 + 156354332 156354372 41 CTACCCTTTCTGGACTCCCCCCCCAGACTCCCAGCACTACG CTACCCTTTCTGGACTCCCCCACCAGACTCCCAGCACTACG < 41bp 0.490122318565052 0.744121575911786 0.0070866942 0.02303946 prediction 0.488243151823572 Functional Gain - RHBG ENSG00000132677 CDS Human protein_coding chr1:156354352 chr1:156354353 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_109979 0 0 1 0 2 RHBG chr1:156354392 5'GT 156354392 Upstream 40bp
chr1 28599955 28599955 1 + C T UCEC 28599954 + 28599934 28599974 41 GCTGCGGGATGAGGGGACGTCCCAGGAGGAGATGGAGAGCC GCTGCGGGATGAGGGGACGTCTCAGGAGGAGATGGAGAGCC < 41bp 0.520467072220345 0.764579981589971 0.8769357 0.75746286 prediction 0.488225818739253 Functional Gain - SESN2 ENSG00000130766 CDS Human protein_coding chr1:28599954 chr1:28599955 synonymous SNV . 0 22 hm5C_associated_SNPs_109980 0 0 1 0 2 SESN2 chr1:28599869 3'AG 28599869 Downstream 87bp
chr1 28599955 28599955 1 + C T UCEC 28599954 + 28599934 28599974 41 GCTGCGGGATGAGGGGACGTCCCAGGAGGAGATGGAGAGCC GCTGCGGGATGAGGGGACGTCTCAGGAGGAGATGGAGAGCC < 41bp 0.520467072220345 0.764579981589971 0.8769357 0.75746286 prediction 0.488225818739253 Functional Gain - SESN2 ENSG00000130766 CDS Human protein_coding chr1:28599954 chr1:28599955 synonymous SNV . 0 22 hm5C_associated_SNPs_109980 0 0 1 0 2 SESN2 chr1:28600019 5'GT 28600019 Upstream 65bp
chr1 60299130 60299130 1 + C A UCEC 60299129 + 60299109 60299149 41 CCCTGATTTAAACCAAATAACCGAATGTTCAGATCCAGTGG CCCTGATTTAAACCAAATAACAGAATGTTCAGATCCAGTGG < 41bp 0.537030249993058 0.781136960040657 0.5717636 0.7080996 prediction 0.488213420095197 Functional Gain - HOOK1 ENSG00000134709 CDS Human protein_coding chr1:60299129 chr1:60299130 synonymous SNV . 0 22 hm5C_associated_SNPs_109982 0 0 1 0 2 HOOK1 chr1:60299077 3'AG 60299077 Downstream 54bp
chr1 60299130 60299130 1 + C A UCEC 60299129 + 60299109 60299149 41 CCCTGATTTAAACCAAATAACCGAATGTTCAGATCCAGTGG CCCTGATTTAAACCAAATAACAGAATGTTCAGATCCAGTGG < 41bp 0.537030249993058 0.781136960040657 0.5717636 0.7080996 prediction 0.488213420095197 Functional Gain - HOOK1 ENSG00000134709 CDS Human protein_coding chr1:60299129 chr1:60299130 synonymous SNV . 0 22 hm5C_associated_SNPs_109982 0 0 1 0 2 HOOK1 chr1:60299209 5'GT 60299209 Upstream 80bp
chr12 54913027 54913027 1 + C A STAD 54913026 + 54913006 54913046 41 GCATGAGAACCCTGACTTAGCCAAGGTGATGAACCTCATTG GCATGAGAACCCTGACTTAGCAAAGGTGATGAACCTCATTG < 41bp 0.482951304035043 0.744104948742856 0.9173348 0.9257463 prediction 0.488209897485711 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54913026 chr12:54913027 synonymous SNV . 0 22 hm5C_associated_SNPs_109984 0 0 0 0 2 NCKAP1L chr12:54912971 3'AG 54912971 Downstream 57bp
chr12 54913027 54913027 1 + C A STAD 54913026 + 54913006 54913046 41 GCATGAGAACCCTGACTTAGCCAAGGTGATGAACCTCATTG GCATGAGAACCCTGACTTAGCAAAGGTGATGAACCTCATTG < 41bp 0.482951304035043 0.744104948742856 0.9173348 0.9257463 prediction 0.488209897485711 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54913026 chr12:54913027 synonymous SNV . 0 22 hm5C_associated_SNPs_109984 0 0 0 0 2 NCKAP1L chr12:54913116 5'GT 54913116 Upstream 90bp
chr1 46740279 46740279 1 + C T rs150315374 46740278 + 46740258 46740298 41 CTCAATCTCATTGGGGCTAACCGGCTGGTCATGTTTGACCC CTCAATCTCATTGGGGCTAACTGGCTGGTCATGTTTGACCC < 41bp 0.512723963493493 0.756821722781753 0.26603532 0.2324644 prediction 0.488195518576519 Functional Gain - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46740278 chr1:46740279 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_109987 0 0 1 0 1 RAD54L chr1:46740210 3'AG 46740210 Downstream 70bp
chr20 2633520 2633520 1 + C G BLCA 2633516 + 2633496 2633536 41 GCACGTGCTGTTTGAGCACGCGGTCGGCTACGCGCTGCTGG GCACGTGCTGTTTGAGCACGCGGTGGGCTACGCGCTGCTGG < 41bp 0.588298309298892 0.832393644044494 0.6857231 0.889418 prediction 0.488190669491205 Functional Gain - NOP56 ENSG00000101361 CDS Human protein_coding chr20:2633516 chr20:2633520 synonymous SNV . 0 25 hm5C_associated_SNPs_109988 0 0 1 0 1 NOP56 chr20:2633577 5'GT 2633577 Upstream 58bp
chr8 28876303 28876303 1 + C T SKCM 28876302 + 28876282 28876322 41 ACACTAAGTATGAGACCAGCCCCCATTCCAATAGAGGACCC ACACTAAGTATGAGACCAGCCTCCATTCCAATAGAGGACCC < 41bp 0.55902884985306 0.803121189094701 0.10268977 0.93972206 prediction 0.488184678483283 Functional Gain - HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28876302 chr8:28876303 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_109989 0 0 1 0 1 HMBOX1 chr8:28876277 3'AG 28876277 Downstream 27bp
chr9 95088364 95088364 1 + C A UCEC 95088360 + 95088340 95088380 41 AGCGTGTGAGGACCCACCGGCGCCCTGGGAAGAGAAGTCCC AGCGTGTGAGGACCCACCGGCGCCATGGGAAGAGAAGTCCC < 41bp 0.335765677953148 0.744090079006763 0.38759664 0.46023324 prediction 0.488180158013527 Functional Gain - CENPP ENSG00000188312 CDS Human protein_coding chr9:95088360 chr9:95088364 synonymous SNV . 0 25 hm5C_associated_SNPs_109990 0 0 0 0 1 CENPP chr9:95088387 5'GT 95088387 Upstream 24bp
chr16 29853079 29853079 1 + C T SKCM 29853078 + 29853058 29853098 41 AGCCTCCAGCCCTTGGCGCCCCGGAACAAGACCCGTGTGGT AGCCTCCAGCCCTTGGCGCCCTGGAACAAGACCCGTGTGGT < 41bp 0.53788644981643 0.781974578058721 0.5897331 0.21695349 prediction 0.488176256484581 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29853078 chr16:29853079 nonsynonymous SNV 0.195 4 22 hm5C_associated_SNPs_109991 0 0 1 0 1 MVP chr16:29853161 5'GT 29853161 Upstream 83bp
chr2 242501798 242501798 1 + C A UCEC 242501797 + 242501777 242501817 41 ATGATCCGGCCCAGCGTCTACCGCAACGTGGCGCGTCAGCT ATGATCCGGCCCAGCGTCTACAGCAACGTGGCGCGTCAGCT < 41bp 0.491451167587402 0.74408096231283 0.16370848 0.11067614 prediction 0.488161924625661 Functional Gain - BOK ENSG00000176720 CDS Human protein_coding chr2:242501797 chr2:242501798 nonsynonymous SNV 0.959 3 22 hm5C_associated_SNPs_109995 0 0 1 0 2 BOK chr2:242501763 3'AG 242501763 Downstream 36bp
chr2 242501798 242501798 1 + C A UCEC 242501797 + 242501777 242501817 41 ATGATCCGGCCCAGCGTCTACCGCAACGTGGCGCGTCAGCT ATGATCCGGCCCAGCGTCTACAGCAACGTGGCGCGTCAGCT < 41bp 0.491451167587402 0.74408096231283 0.16370848 0.11067614 prediction 0.488161924625661 Functional Gain - BOK ENSG00000176720 CDS Human protein_coding chr2:242501797 chr2:242501798 nonsynonymous SNV 0.959 3 22 hm5C_associated_SNPs_109995 0 0 1 0 2 BOK chr2:242501891 5'GT 242501891 Upstream 94bp
chr17 76073379 76073379 1 + C T COAD 76073378 + 76073358 76073398 41 GGCCCTGGGTGGGATTGCCTCCGGGCTGGGCATGCAAAACT GGCCCTGGGTGGGATTGCCTCTGGGCTGGGCATGCAAAACT < 41bp 0.521798305666589 0.76587833151392 0.7126684 0.31297347 prediction 0.488160051694663 Functional Gain - TNRC6C ENSG00000078687 CDS Human protein_coding chr17:76073378 chr17:76073379 synonymous SNV . 0 22 hm5C_associated_SNPs_109996 0 0 1 0 1 TNRC6C chr17:76073415 5'GT 76073415 Upstream 37bp
chr20 61162305 61162305 1 + C G OV 61162304 + 61162284 61162324 41 GGCTCGGCACGTGGTCAGCTCCAAGTAAGTGAAGCCCTGAG GGCTCGGCACGTGGTCAGCTCGAAGTAAGTGAAGCCCTGAG < 41bp 0.431550992158523 0.744079806358465 0.35555565 0.7351912 prediction 0.48815961271693 Functional Gain - MIR1-1HG ENSG00000174407 CDS Human antisense chr20:61162304 chr20:61162305 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_109997 0 0 0 0 1 MIR1-1HG chr20:61162307 5'GT 61162307 Upstream 3bp
chr16 29811295 29811295 1 + C T SKCM 29811294 + 29811274 29811314 41 TCCACCAGAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGG TCCACCAGAGGCAAAGAGAGCTCGAGGCCCTGAGGAAGAGG < 41bp 0.558457630795224 0.802536951097801 0.40094003 0.25759995 prediction 0.488158640605153 Functional Gain - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811294 chr16:29811295 synonymous SNV . 0 22 hm5C_associated_SNPs_109998 0 0 1 0 2 KIF22 chr16:29811234 3'AG 29811234 Downstream 62bp
chr16 29811295 29811295 1 + C T SKCM 29811294 + 29811274 29811314 41 TCCACCAGAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGG TCCACCAGAGGCAAAGAGAGCTCGAGGCCCTGAGGAAGAGG < 41bp 0.558457630795224 0.802536951097801 0.40094003 0.25759995 prediction 0.488158640605153 Functional Gain - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811294 chr16:29811295 synonymous SNV . 0 22 hm5C_associated_SNPs_109998 0 0 1 0 2 KIF22 chr16:29811369 5'GT 29811369 Upstream 75bp
chr17 78727930 78727930 1 + C T SKCM 78727929 + 78727909 78727949 41 CTGCCCATGATCCCCGACCTCCCGGCTGACCTATTCACCTC CTGCCCATGATCCCCGACCTCTCGGCTGACCTATTCACCTC < 41bp 0.517972846872909 0.76205153093769 0.20711935 0.22911263 prediction 0.488157368129564 Functional Gain - RPTOR ENSG00000141564 CDS Human protein_coding chr17:78727929 chr17:78727930 nonsynonymous SNV 0.837 4 22 hm5C_associated_SNPs_109999 0 0 1 0 1 RPTOR chr17:78727985 5'GT 78727985 Upstream 56bp
chr19 50384543 50384543 1 + C T LUAD 50384542 + 50384522 50384562 41 TAGGTGCAGAGCCCAGCTGCCCCCAGGGCTCCTGGGCCTTC TAGGTGCAGAGCCCAGCTGCCTCCAGGGCTCCTGGGCCTTC < 41bp 0.555449291842428 0.799527087944906 0.13466454 0.9405594 prediction 0.488155592204957 Functional Gain - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50384542 chr19:50384543 nonsynonymous SNV 0.968 0 22 hm5C_associated_SNPs_110001 0 0 1 0 2 TBC1D17 chr19:50384511 3'AG 50384511 Downstream 33bp
chr19 50384543 50384543 1 + C T LUAD 50384542 + 50384522 50384562 41 TAGGTGCAGAGCCCAGCTGCCCCCAGGGCTCCTGGGCCTTC TAGGTGCAGAGCCCAGCTGCCTCCAGGGCTCCTGGGCCTTC < 41bp 0.555449291842428 0.799527087944906 0.13466454 0.9405594 prediction 0.488155592204957 Functional Gain - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50384542 chr19:50384543 nonsynonymous SNV 0.968 0 22 hm5C_associated_SNPs_110001 0 0 1 0 2 TBC1D17 chr19:50384525 3'AG 50384525 Downstream 19bp
chr12 56625312 56625312 1 + C A STAD 56625308 + 56625288 56625328 41 AGCATGGGCCTCTGACTGGACGGGCTGCATCCCCAGCTGCA AGCATGGGCCTCTGACTGGACGGGATGCATCCCCAGCTGCA < 41bp 0.679020366388002 0.923095048046037 0.42364365 0.8161924 prediction 0.488149363316071 Functional Gain - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56625308 chr12:56625312 nonsynonymous SNV 0.129 0 25 hm5C_associated_SNPs_110003 0 0 1 0 2 SLC39A5 chr12:56625250 3'AG 56625250 Downstream 63bp
chr12 56625312 56625312 1 + C A STAD 56625308 + 56625288 56625328 41 AGCATGGGCCTCTGACTGGACGGGCTGCATCCCCAGCTGCA AGCATGGGCCTCTGACTGGACGGGATGCATCCCCAGCTGCA < 41bp 0.679020366388002 0.923095048046037 0.42364365 0.8161924 prediction 0.488149363316071 Functional Gain - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56625308 chr12:56625312 nonsynonymous SNV 0.129 0 25 hm5C_associated_SNPs_110003 0 0 1 0 2 SLC39A5 chr12:56625345 5'GT 56625345 Upstream 34bp
chr9 113459613 113459613 1 + C T SKCM 113459612 + 113459592 113459632 41 CTATCTCTGGCAGGAAAATTCCCGAATTGCAGTTCTTGAAT CTATCTCTGGCAGGAAAATTCTCGAATTGCAGTTCTTGAAT < 41bp 0.524034764960478 0.768089897142914 0.42063484 0.93592846 prediction 0.488110264364873 Functional Gain - MUSK ENSG00000030304 CDS Human protein_coding chr9:113459612 chr9:113459613 synonymous SNV . 0 22 hm5C_associated_SNPs_110008 0 0 0 0 1 MUSK chr9:113459605 3'AG 113459605 Downstream 9bp
chr18 47110080 47110080 1 + C T GBM 47110079 + 47110059 47110099 41 CGCAGCTACCTGTCTCAACCCCGCAACCCCGGACGGGAGCT CGCAGCTACCTGTCTCAACCCTGCAACCCCGGACGGGAGCT < 41bp 0.554489952560892 0.798538876956429 0.30102104 0.37345368 prediction 0.488097848791074 Functional Gain - LIPG ENSG00000101670 CDS Human protein_coding chr18:47110079 chr18:47110080 nonsynonymous SNV 0.003 2 22 hm5C_associated_SNPs_110010 0 0 1 0 1 LIPG chr18:47110144 5'GT 47110144 Upstream 65bp
chr6 43399885 43399885 1 + C A GBM 43399884 + 43399864 43399904 41 TCCCCCTTGTCCCCAGGAGTCCAGATTACATCCTACCCTGC TCCCCCTTGTCCCCAGGAGTCAAGATTACATCCTACCCTGC < 41bp 0.532001916816446 0.776048664799662 0.3714967 0.34546834 prediction 0.488093495966433 Functional Gain - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43399884 chr6:43399885 nonsynonymous SNV 0.077 0 22 hm5C_associated_SNPs_110013 0 0 1 0 1 ABCC10 chr6:43399880 3'AG 43399880 Downstream 6bp
chr12 111731317 111731317 1 + C A LUAD 111731316 + 111731296 111731336 41 AAGCCGCCTCCCAGGCATTCCCGGGAAAGCCCTCCTGACAG AAGCCGCCTCCCAGGCATTCCAGGGAAAGCCCTCCTGACAG < 41bp 0.549027315489328 0.793071726679123 0.9135906 0.91232604 prediction 0.488088822379591 Functional Gain - CUX2 ENSG00000111249 CDS Human protein_coding chr12:111731316 chr12:111731317 synonymous SNV . 0 22 hm5C_associated_SNPs_110014 0 0 0 0 2 CUX2 chr12:111731250 3'AG 111731250 Downstream 68bp
chr12 111731317 111731317 1 + C A LUAD 111731316 + 111731296 111731336 41 AAGCCGCCTCCCAGGCATTCCCGGGAAAGCCCTCCTGACAG AAGCCGCCTCCCAGGCATTCCAGGGAAAGCCCTCCTGACAG < 41bp 0.549027315489328 0.793071726679123 0.9135906 0.91232604 prediction 0.488088822379591 Functional Gain - CUX2 ENSG00000111249 CDS Human protein_coding chr12:111731316 chr12:111731317 synonymous SNV . 0 22 hm5C_associated_SNPs_110014 0 0 0 0 2 CUX2 chr12:111731373 5'GT 111731373 Upstream 57bp
chr2 20069285 20069285 1 + C T rs61732177 20069284 + 20069264 20069304 41 GATGCCCAGCTGCCGCACCTCCCGTGGCCCCACGCTGTGGC GATGCCCAGCTGCCGCACCTCTCGTGGCCCCACGCTGTGGC < 41bp 0.512845385362451 0.756881915756492 0.6937904 0.5001111 prediction 0.488073060788082 Functional Gain - LINC00954 ENSG00000228784 ncRNA_exonic Human lincRNA chr2:20069284 chr2:20069285 . . 0 22 hm5C_associated_SNPs_110015 0 0 0 0 2 LINC00954 chr2:20069257 3'AG 20069257 Downstream 29bp
chr2 20069285 20069285 1 + C T rs61732177 20069284 + 20069264 20069304 41 GATGCCCAGCTGCCGCACCTCCCGTGGCCCCACGCTGTGGC GATGCCCAGCTGCCGCACCTCTCGTGGCCCCACGCTGTGGC < 41bp 0.512845385362451 0.756881915756492 0.6937904 0.5001111 prediction 0.488073060788082 Functional Gain - LINC00954 ENSG00000228784 ncRNA_exonic Human lincRNA chr2:20069284 chr2:20069285 . . 0 22 hm5C_associated_SNPs_110015 0 0 0 0 2 LINC00954 chr2:20069374 5'GT 20069374 Upstream 90bp
chr16 19070837 19070837 1 + A G COAD 19070834 + 19070814 19070854 41 CTGGTAAGGAAGCATAGCTCCAGAGGGTCATGGCTGGGGAC CTGGTAAGGAAGCATAGCTCCAGGGGGTCATGGCTGGGGAC < 41bp 0.507630536448544 0.751663620033144 0.88730174 0.9145746 prediction 0.488066167169202 Functional Gain - TMC7 ENSG00000170537 CDS Human protein_coding chr16:19070834 chr16:19070837 synonymous SNV . 0 24 hm5C_associated_SNPs_110017 0 0 0 0 1 TMC7 chr16:19070738 3'AG 19070738 Downstream 100bp
chr19 11106910 11106910 1 + C T HNSC 11106909 + 11106889 11106929 41 GCTGAAGATGAGGAGGGGTACCGCAAGCTCATCGACCAGAA GCTGAAGATGAGGAGGGGTACTGCAAGCTCATCGACCAGAA < 41bp 0.509081828584524 0.753114572598704 0.29707873 0.78798056 prediction 0.488065488028359 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11106909 chr19:11106910 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_110018 0 0 1 0 1 SMARCA4 chr19:11106889 3'AG 11106889 Downstream 22bp
chr5 180376972 180376972 1 + C A rs142207026 180376971 + 180376951 180376991 41 TCTGATCTGAAAACTGTAACCCATAGAAAAGCTCCCCAGGA TCTGATCTGAAAACTGTAACCAATAGAAAAGCTCCCCAGGA < 41bp 0.490334882214348 0.744029886859172 0.23328498 0.31133252 prediction 0.488059773718345 Functional Gain - BTNL8 ENSG00000113303 CDS Human protein_coding chr5:180376971 chr5:180376972 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_110019 0 0 0 0 1 BTNL8 chr5:180376904 3'AG 180376904 Downstream 69bp
chr7 142566338 142566338 1 + C T CESC 142566337 + 142566317 142566357 41 GGCCCTGTGGGCCGGGGGCGCCGAAAGCCTGCAGATGACCT GGCCCTGTGGGCCGGGGGCGCTGAAAGCCTGCAGATGACCT < 41bp 0.509324077457028 0.753344581299882 0.85503244 0.82315016 prediction 0.488041007685707 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142566337 chr7:142566338 synonymous SNV . 0 22 hm5C_associated_SNPs_110022 0 0 0 0 1 EPHB6 chr7:142566247 3'AG 142566247 Downstream 92bp
chr2 241514979 241514979 1 + C G UCEC 241514978 + 241514958 241514998 41 CAGGACCTGCTGGACTCCTTCCTGAGCTTCTTCCCGGAGCT CAGGACCTGCTGGACTCCTTCGTGAGCTTCTTCCCGGAGCT < 41bp 0.418274217412026 0.744005937702049 0.2375879 0.7107233 prediction 0.488011875404098 Functional Gain - RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241514978 chr2:241514979 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_110025 0 0 1 0 1 RNPEPL1 chr2:241515027 5'GT 241515027 Upstream 49bp
chr17 6928472 6928472 1 + C A COAD 6928468 + 6928448 6928488 41 CCCCCTACCTCCTCACATCCCAGGCTCAAGACACCTCTGGA CCCCCTACCTCCTCACATCCCAGGATCAAGACACCTCTGGA < 41bp 0.684745531051019 0.928749157378291 0.08905995 0.13588232 prediction 0.488007252654544 Functional Gain - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6928468 chr17:6928472 nonsynonymous SNV 0.077 0 25 hm5C_associated_SNPs_110026 0 0 0 0 2 BCL6B chr17:6928395 3'AG 6928395 Downstream 78bp
chr17 6928472 6928472 1 + C A COAD 6928468 + 6928448 6928488 41 CCCCCTACCTCCTCACATCCCAGGCTCAAGACACCTCTGGA CCCCCTACCTCCTCACATCCCAGGATCAAGACACCTCTGGA < 41bp 0.684745531051019 0.928749157378291 0.08905995 0.13588232 prediction 0.488007252654544 Functional Gain - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6928468 chr17:6928472 nonsynonymous SNV 0.077 0 25 hm5C_associated_SNPs_110026 0 0 0 0 2 BCL6B chr17:6928519 5'GT 6928519 Upstream 48bp
chr12 85674209 85674209 1 + C A LUAD 85674208 + 85674188 85674228 41 TGCAGGCCTTCGGACCCCTGCCCCGCGCCGAGCATCACGTG TGCAGGCCTTCGGACCCCTGCACCGCGCCGAGCATCACGTG < 41bp 0.495036033004515 0.744002157966291 0.14115328 0.22020507 prediction 0.488004315932581 Functional Gain - ALX1 ENSG00000180318 CDS Human protein_coding chr12:85674208 chr12:85674209 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_110029 0 0 0 0 1 ALX1 chr12:85674265 5'GT 85674265 Upstream 57bp
chr19 15648184 15648184 1 + C G CESC 15648183 + 15648163 15648203 41 CCTCCACAGCTGCCATCGCCCCCAAGGATGACCTCTTCTAT CCTCCACAGCTGCCATCGCCCGCAAGGATGACCTCTTCTAT < 41bp 0.418528144124133 0.744001574875371 0.01940599 0.08591634 prediction 0.488003149750742 Functional Gain - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15648183 chr19:15648184 nonsynonymous SNV 0.979 3 22 hm5C_associated_SNPs_110030 0 0 0 0 2 CYP4F22 chr19:15648172 3'AG 15648172 Downstream 13bp
chr19 15648184 15648184 1 + C G CESC 15648183 + 15648163 15648203 41 CCTCCACAGCTGCCATCGCCCCCAAGGATGACCTCTTCTAT CCTCCACAGCTGCCATCGCCCGCAAGGATGACCTCTTCTAT < 41bp 0.418528144124133 0.744001574875371 0.01940599 0.08591634 prediction 0.488003149750742 Functional Gain - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15648183 chr19:15648184 nonsynonymous SNV 0.979 3 22 hm5C_associated_SNPs_110030 0 0 0 0 2 CYP4F22 chr19:15648225 5'GT 15648225 Upstream 42bp
chr15 23261980 23261980 1 + T C UCEC 23261978 + 23261958 23261998 41 TTCAGGAGCAGCACAAGAGCCTTCAGCAGCTGGCCAAGCCA TTCAGGAGCAGCACAAGAGCCTCCAGCAGCTGGCCAAGCCA < 41bp 0.589440042819886 0.833439764845437 0.14147761 0.9444794 prediction 0.487999444051103 Functional Gain - GOLGA8IP ENSG00000153666 CDS Human other chr15:23261978 chr15:23261980 synonymous SNV . 0 23 hm5C_associated_SNPs_110031 0 0 0 0 1 GOLGA8IP chr15:23262019 5'GT 23262019 Upstream 40bp
chr16 83941777 83941777 1 + C T UCEC 83941776 + 83941756 83941796 41 AACTGGATGGACATGAAGCGCCGCGTTGGGCCCTACAGAAG AACTGGATGGACATGAAGCGCTGCGTTGGGCCCTACAGAAG < 41bp 0.520000809102938 0.763997785076554 0.35651213 0.17837283 prediction 0.487993951947233 Functional Gain - MLYCD ENSG00000103150 CDS Human protein_coding chr16:83941776 chr16:83941777 nonsynonymous SNV 0.754 5 22 hm5C_associated_SNPs_110032 0 0 0 0 1 MLYCD chr16:83941731 3'AG 83941731 Downstream 47bp
chr16 69143354 69143354 1 + T C UCEC 69143352 + 69143332 69143372 41 GTGGGCACCAGCCTGTTTGCCCTGGCAGTGCTGGGTGGCAT GTGGGCACCAGCCTGTTTGCCCCGGCAGTGCTGGGTGGCAT < 41bp 0.524341436928458 0.768316942407443 0.14053154 0.18216944 prediction 0.487951010957971 Functional Gain - HAS3 ENSG00000103044 CDS Human protein_coding chr16:69143352 chr16:69143354 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_110039 0 0 0 0 1 HAS3 chr16:69143299 3'AG 69143299 Downstream 56bp
chr12 132404072 132404072 1 + C G rs146607520 132404068 + 132404048 132404088 41 GTGGCCGAGCTACTGTCCTCCGGCCTGCAAAGTGCCATCGA GTGGCCGAGCTACTGTCCTCCGGCGTGCAAAGTGCCATCGA < 41bp 0.458587129162939 0.743964587070236 0.4806604 0.77963626 prediction 0.487929174140473 Functional Gain - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132404068 chr12:132404072 nonsynonymous SNV 0.630 2 25 hm5C_associated_SNPs_110041 0 0 1 0 1 ULK1 chr12:132404017 3'AG 132404017 Downstream 56bp
chr1 11896130 11896130 1 + C T SKCM 11896129 + 11896109 11896149 41 ACCACGGTCCACCATGCCTTCCCGGTGGTCACAGAGAACCG ACCACGGTCCACCATGCCTTCTCGGTGGTCACAGAGAACCG < 41bp 0.557128862622431 0.801084126112796 0.07066411 0.07362887 prediction 0.487910526980731 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11896129 chr1:11896130 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_110045 0 0 0 0 1 CLCN6 chr1:11896210 5'GT 11896210 Upstream 81bp
chr1 202096948 202096948 1 + C T SKCM 202096947 + 202096927 202096967 41 ACGTGGCCACCAGCACCCTGCCCAAGGTGAGGCCCATCGAG ACGTGGCCACCAGCACCCTGCTCAAGGTGAGGCCCATCGAG < 41bp 0.494927174321763 0.743944957416676 0.11248922 0.19794992 prediction 0.487889914833353 Functional Gain - GPR37L1 ENSG00000170075 CDS Human protein_coding chr1:202096947 chr1:202096948 nonsynonymous SNV 0.984 0 22 hm5C_associated_SNPs_110047 0 0 0 0 1 GPR37L1 chr1:202096869 3'AG 202096869 Downstream 80bp
chr5 180338423 180338423 1 + C T SKCM 180338422 + 180338402 180338442 41 GTCAGTCCTCGGGCTGGTTCCCCCGGCCCACAGCGAAGTGG GTCAGTCCTCGGGCTGGTTCCTCCGGCCCACAGCGAAGTGG < 41bp 0.539436118326711 0.783380438649969 0.20365822 0.3317119 prediction 0.487888640646515 Functional Gain - BTNL8 ENSG00000113303 CDS Human protein_coding chr5:180338422 chr5:180338423 nonsynonymous SNV 0.003 3 22 hm5C_associated_SNPs_110048 0 0 0 0 1 BTNL8 chr5:180338339 3'AG 180338339 Downstream 85bp
chr1 24078930 24078930 1 + C T UCEC 24078929 + 24078909 24078949 41 TTGCCAGTGTTGCCAGACCTCCCGTTACCCGCGATACAGGC TTGCCAGTGTTGCCAGACCTCTCGTTACCCGCGATACAGGC < 41bp 0.477034600155225 0.743928263620542 0.05283025 0.076453775 prediction 0.487856527241084 Functional Gain - ELOA ENSG00000011007 CDS Human protein_coding chr1:24078929 chr1:24078930 nonsynonymous SNV 0.821 3 22 hm5C_associated_SNPs_110054 0 0 1 0 2 ELOA chr1:24078897 3'AG 24078897 Downstream 34bp
chr1 24078930 24078930 1 + C T UCEC 24078929 + 24078909 24078949 41 TTGCCAGTGTTGCCAGACCTCCCGTTACCCGCGATACAGGC TTGCCAGTGTTGCCAGACCTCTCGTTACCCGCGATACAGGC < 41bp 0.477034600155225 0.743928263620542 0.05283025 0.076453775 prediction 0.487856527241084 Functional Gain - ELOA ENSG00000011007 CDS Human protein_coding chr1:24078929 chr1:24078930 nonsynonymous SNV 0.821 3 22 hm5C_associated_SNPs_110054 0 0 1 0 2 ELOA chr1:24079008 5'GT 24079008 Upstream 79bp
chr16 57789314 57789314 1 + C T UCEC 57789313 + 57789293 57789333 41 GAGGATGCCATGTCACAGATCCGCAAAGGCCACGACACCAT GAGGATGCCATGTCACAGATCTGCAAAGGCCACGACACCAT < 41bp 0.550294998013396 0.794221281057389 0.22712362 0.39902946 prediction 0.487852566087987 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57789313 chr16:57789314 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_110056 0 0 1 0 1 KATNB1 chr16:57789257 3'AG 57789257 Downstream 58bp
chr1 41285870 41285870 1 + C A ESCA 41285869 + 41285849 41285889 41 TCCGGCTTTGCCCTGAAGGTCCAGGAGCAGCACCGGCAGAA TCCGGCTTTGCCCTGAAGGTCAAGGAGCAGCACCGGCAGAA < 41bp 0.534404609805885 0.778292488942623 0.28477132 0.42713276 prediction 0.487775758273476 Functional Gain - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41285869 chr1:41285870 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_110062 0 0 0 0 2 KCNQ4 chr1:41285837 3'AG 41285837 Downstream 34bp
chr1 41285870 41285870 1 + C A ESCA 41285869 + 41285849 41285889 41 TCCGGCTTTGCCCTGAAGGTCCAGGAGCAGCACCGGCAGAA TCCGGCTTTGCCCTGAAGGTCAAGGAGCAGCACCGGCAGAA < 41bp 0.534404609805885 0.778292488942623 0.28477132 0.42713276 prediction 0.487775758273476 Functional Gain - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41285869 chr1:41285870 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_110062 0 0 0 0 2 KCNQ4 chr1:41285932 5'GT 41285932 Upstream 63bp
chrX 37953620 37953620 1 + C A rs57226394 37953619 + 37953599 37953639 41 CAGGAGCTCACAAAGAGTCACCGCAGAAACACTTCTGGCAC CAGGAGCTCACAAAGAGTCACAGCAGAAACACTTCTGGCAC < 41bp 0.559350806078961 0.803233274169652 0.2340003 0.36046 prediction 0.487764936181382 Functional Gain - SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37953619 chrX:37953620 nonsynonymous SNV 0.014 0 22 hm5C_associated_SNPs_110063 0 0 0 0 2 SYTL5 chrX:37953548 3'AG 37953548 Downstream 73bp
chrX 37953620 37953620 1 + C A rs57226394 37953619 + 37953599 37953639 41 CAGGAGCTCACAAAGAGTCACCGCAGAAACACTTCTGGCAC CAGGAGCTCACAAAGAGTCACAGCAGAAACACTTCTGGCAC < 41bp 0.559350806078961 0.803233274169652 0.2340003 0.36046 prediction 0.487764936181382 Functional Gain - SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37953619 chrX:37953620 nonsynonymous SNV 0.014 0 22 hm5C_associated_SNPs_110063 0 0 0 0 2 SYTL5 chrX:37953677 5'GT 37953677 Upstream 58bp
chr5 96244719 96244719 1 + T C rs17486915 96244717 + 96244697 96244737 41 ACATGACTTACTACCTCCAACATGAAACAAGCAGCCCCGCA ACATGACTTACTACCTCCAACACGAAACAAGCAGCCCCGCA < 41bp 0.533655484024869 0.777534317603605 0.05156073 0.08519709 prediction 0.487757667157471 Functional Gain - ERAP2 ENSG00000164308 CDS Human protein_coding chr5:96244717 chr5:96244719 synonymous SNV . 0 23 hm5C_associated_SNPs_110064 0 1 0 0 1 ERAP2 chr5:96244665 3'AG 96244665 Downstream 55bp
chr17 25637136 25637136 1 + C G BRCA 25637135 + 25637115 25637155 41 TTTGCTGGAGGAGCAAATGACCGGTGGGTACGATCTGTATC TTTGCTGGAGGAGCAAATGACGGGTGGGTACGATCTGTATC < 41bp 0.607862530640401 0.851739911354012 0.44043577 0.92402005 prediction 0.487754761427221 Functional Gain - WSB1 ENSG00000109046 CDS Human protein_coding chr17:25637135 chr17:25637136 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_110066 0 0 1 1 2 WSB1 chr17:25637087 3'AG 25637087 Downstream 50bp
chr17 25637136 25637136 1 + C G BRCA 25637135 + 25637115 25637155 41 TTTGCTGGAGGAGCAAATGACCGGTGGGTACGATCTGTATC TTTGCTGGAGGAGCAAATGACGGGTGGGTACGATCTGTATC < 41bp 0.607862530640401 0.851739911354012 0.44043577 0.92402005 prediction 0.487754761427221 Functional Gain - WSB1 ENSG00000109046 CDS Human protein_coding chr17:25637135 chr17:25637136 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_110066 0 0 1 1 2 WSB1 chr17:25637200 5'GT 25637200 Upstream 65bp
chr1 117629096 117629096 1 + C T rs34703179 117629095 + 117629075 117629115 41 CCTCGTGGCCAAGGAGATTCCCACAAACAAGCAAGAGGCAG CCTCGTGGCCAAGGAGATTCCTACAAACAAGCAAGAGGCAG < 41bp 0.548321148086817 0.792196251970473 0.08688569 0.8580383 prediction 0.487750207767312 Functional Gain - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117629095 chr1:117629096 synonymous SNV . 0 22 hm5C_associated_SNPs_110067 0 0 0 0 2 TTF2 chr1:117629039 3'AG 117629039 Downstream 58bp
chr1 117629096 117629096 1 + C T rs34703179 117629095 + 117629075 117629115 41 CCTCGTGGCCAAGGAGATTCCCACAAACAAGCAAGAGGCAG CCTCGTGGCCAAGGAGATTCCTACAAACAAGCAAGAGGCAG < 41bp 0.548321148086817 0.792196251970473 0.08688569 0.8580383 prediction 0.487750207767312 Functional Gain - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117629095 chr1:117629096 synonymous SNV . 0 22 hm5C_associated_SNPs_110067 0 0 0 0 2 TTF2 chr1:117629144 5'GT 117629144 Upstream 49bp
chr2 233271616 233271616 1 + C A PRAD 233271615 + 233271595 233271635 41 GCTTCCAGACATGCAGGGGCCCTGGGTGCTGCTCCTGCTGG GCTTCCAGACATGCAGGGGCCATGGGTGCTGCTCCTGCTGG < 41bp 0.498633715617459 0.743860470441803 0.8171075 0.8693545 prediction 0.487720940883605 Functional Gain - ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233271615 chr2:233271616 synonymous SNV . 0 22 hm5C_associated_SNPs_110070 0 0 0 0 1 ALPPL2 chr2:233271671 5'GT 233271671 Upstream 56bp
chr12 52309876 52309876 1 + A G STAD 52309873 + 52309853 52309893 41 ACCTGGACATCGGCAACAACCCGAGAGTGGGCACCAAGCGG ACCTGGACATCGGCAACAACCCGGGAGTGGGCACCAAGCGG < 41bp 0.506923285759735 0.750783582595514 0.8494961 0.9180386 prediction 0.487720593671558 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309873 chr12:52309876 nonsynonymous SNV 0.977 3 24 hm5C_associated_SNPs_110071 0 0 0 0 1 ACVRL1 chr12:52309820 3'AG 52309820 Downstream 57bp
chr15 69677060 69677060 1 + T G UCEC 69677058 + 69677038 69677078 41 ACTGCACTGTATATGACAGACATCAAGAATGACAGCTACTC ACTGCACTGTATATGACAGACAGCAAGAATGACAGCTACTC < 41bp 0.403246274189469 0.743839457936898 0.029796481 0.081426084 prediction 0.487678915873797 Functional Gain - PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69677058 chr15:69677060 nonsynonymous SNV 0.958 0 23 hm5C_associated_SNPs_110076 0 0 1 0 1 PAQR5 chr15:69677016 3'AG 69677016 Downstream 45bp
chr19 3765299 3765299 1 + C T SKCM 3765298 + 3765278 3765318 41 ACAAGGAAGGGCAGGATGTACCCCTGAAACCGGATGCTGAG ACAAGGAAGGGCAGGATGTACTCCTGAAACCGGATGCTGAG < 41bp 0.48513029284689 0.743833151883416 0.039025605 0.058692038 prediction 0.487666303766832 Functional Gain - MRPL54 ENSG00000183617 CDS Human protein_coding chr19:3765298 chr19:3765299 nonsynonymous SNV 0.452 0 22 hm5C_associated_SNPs_110077 0 0 1 0 1 MRPL54 chr19:3765329 5'GT 3765329 Upstream 31bp
chr16 55563800 55563800 1 + C T rs549974087 55563799 + 55563779 55563819 41 TCCCGTGTAGATCCGGATTCCCGAAAAAACACAATAAATGA TCCCGTGTAGATCCGGATTCCTGAAAAAACACAATAAATGA < 41bp 0.489470750474045 0.74383259277906 0.08321968 0.13533995 prediction 0.48766518555812 Functional Gain - LPCAT2 ENSG00000087253 CDS Human protein_coding chr16:55563799 chr16:55563800 stopgain 0.995 1 22 hm5C_associated_SNPs_110078 0 0 0 0 2 LPCAT2 chr16:55563747 3'AG 55563747 Downstream 54bp
chr16 55563800 55563800 1 + C T rs549974087 55563799 + 55563779 55563819 41 TCCCGTGTAGATCCGGATTCCCGAAAAAACACAATAAATGA TCCCGTGTAGATCCGGATTCCTGAAAAAACACAATAAATGA < 41bp 0.489470750474045 0.74383259277906 0.08321968 0.13533995 prediction 0.48766518555812 Functional Gain - LPCAT2 ENSG00000087253 CDS Human protein_coding chr16:55563799 chr16:55563800 stopgain 0.995 1 22 hm5C_associated_SNPs_110078 0 0 0 0 2 LPCAT2 chr16:55563859 5'GT 55563859 Upstream 60bp
chr1 40432351 40432351 1 + C A LUSC 40432347 + 40432327 40432367 41 GCTGTCATCCTGATCCTGGGCGTGCGGGAGCAGAGAGGTAA GCTGTCATCCTGATCCTGGGCGTGAGGGAGCAGAGAGGTAA < 41bp 0.340620443754638 0.74382809481891 0.2836172 0.2879069 prediction 0.487656189637819 Functional Gain - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40432347 chr1:40432351 synonymous SNV . 0 25 hm5C_associated_SNPs_110079 0 0 0 0 3 MFSD2A chr1:40432273 3'AG 40432273 Downstream 79bp
chr1 40432351 40432351 1 + C A LUSC 40432347 + 40432327 40432367 41 GCTGTCATCCTGATCCTGGGCGTGCGGGAGCAGAGAGGTAA GCTGTCATCCTGATCCTGGGCGTGAGGGAGCAGAGAGGTAA < 41bp 0.340620443754638 0.74382809481891 0.2836172 0.2879069 prediction 0.487656189637819 Functional Gain - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40432347 chr1:40432351 synonymous SNV . 0 25 hm5C_associated_SNPs_110079 0 0 0 0 3 MFSD2A chr1:40432279 3'AG 40432279 Downstream 73bp
chr1 40432351 40432351 1 + C A LUSC 40432347 + 40432327 40432367 41 GCTGTCATCCTGATCCTGGGCGTGCGGGAGCAGAGAGGTAA GCTGTCATCCTGATCCTGGGCGTGAGGGAGCAGAGAGGTAA < 41bp 0.340620443754638 0.74382809481891 0.2836172 0.2879069 prediction 0.487656189637819 Functional Gain - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40432347 chr1:40432351 synonymous SNV . 0 25 hm5C_associated_SNPs_110079 0 0 0 0 3 MFSD2A chr1:40432363 5'GT 40432363 Upstream 13bp
chr14 24606965 24606965 1 + T G STAD 24606962 + 24606942 24606982 41 AGATCGTGGTCCTTCTGCAGCGCTTGAAGCCTGAGATCAAG AGATCGTGGTCCTTCTGCAGCGCGTGAAGCCTGAGATCAAG < 41bp 0.341667928862014 0.743821078349047 0.099848926 0.14693496 prediction 0.487642156698095 Functional Gain - PSME1 ENSG00000092010 CDS Human protein_coding chr14:24606962 chr14:24606965 nonsynonymous SNV 0.973 0 24 hm5C_associated_SNPs_110081 0 0 1 0 2 PSME1 chr14:24606909 3'AG 24606909 Downstream 57bp
chr14 24606965 24606965 1 + T G STAD 24606962 + 24606942 24606982 41 AGATCGTGGTCCTTCTGCAGCGCTTGAAGCCTGAGATCAAG AGATCGTGGTCCTTCTGCAGCGCGTGAAGCCTGAGATCAAG < 41bp 0.341667928862014 0.743821078349047 0.099848926 0.14693496 prediction 0.487642156698095 Functional Gain - PSME1 ENSG00000092010 CDS Human protein_coding chr14:24606962 chr14:24606965 nonsynonymous SNV 0.973 0 24 hm5C_associated_SNPs_110081 0 0 1 0 2 PSME1 chr14:24607006 5'GT 24607006 Upstream 42bp
chr1 55505668 55505668 1 + C G rs11583680 55505664 + 55505644 55505684 41 TGCGTTCCGAGGAGGACGGCCTGGCCGAAGCACCCGAGCAC TGCGTTCCGAGGAGGACGGCCTGGGCGAAGCACCCGAGCAC < 41bp 0.576951282397511 0.820760432620124 0.31682605 0.82574666 prediction 0.487618300445225 Functional Gain - PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55505664 chr1:55505668 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_110083 0 0 1 0 1 PCSK9 chr1:55505717 5'GT 55505717 Upstream 50bp
chr2 946721 946721 1 + C G rs539116329 946717 + 946697 946737 41 ACCCCCGCCCCCGGCCGCCTCCCGCGGACGCCAGGGCTGCC ACCCCCGCCCCCGGCCGCCTCCCGGGGACGCCAGGGCTGCC < 41bp 0.55430059466416 0.798105590116141 0.21461418 0.607002 prediction 0.487609990903962 Functional Gain - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:946717 chr2:946721 synonymous SNV . 0 25 hm5C_associated_SNPs_110085 0 0 0 0 1 SNTG2 chr2:946754 5'GT 946754 Upstream 34bp
chr1 214500994 214500994 1 + C T LUSC 214500993 + 214500973 214501013 41 TGATGAATCATAGCTGTTGCCCCAATGTCATTGTGACCTAC TGATGAATCATAGCTGTTGCCTCAATGTCATTGTGACCTAC < 41bp 0.543998257464655 0.787801416507728 0.15053076 0.75131756 prediction 0.487606318086145 Functional Gain - SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214500993 chr1:214500994 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_110086 0 0 1 0 1 SMYD2 chr1:214501067 5'GT 214501067 Upstream 74bp
chr9 2115849 2115849 1 + C A BLCA 2115848 + 2115828 2115868 41 CAGGCCCAAGACCGAGCTCACCGCATCGGGCAGCAGAACGA CAGGCCCAAGACCGAGCTCACAGCATCGGGCAGCAGAACGA < 41bp 0.514057229591267 0.757857152204534 0.26128265 0.39857662 prediction 0.487599845226533 Functional Gain - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2115848 chr9:2115849 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_110088 0 0 1 0 1 SMARCA2 chr9:2115822 3'AG 2115822 Downstream 28bp
chr16 1716463 1716463 1 + C T rs183144093 1716462 + 1716442 1716482 41 TACAAGTGCCGGCATCCTTTCCGGGAACCCCCTCCCTGCCT TACAAGTGCCGGCATCCTTTCTGGGAACCCCCTCCCTGCCT < 41bp 0.519422356349797 0.76321366545757 0.93482614 0.9127125 prediction 0.487582618215546 Functional Gain - CRAMP1 ENSG00000007545 CDS Human protein_coding chr16:1716462 chr16:1716463 synonymous SNV . 0 22 hm5C_associated_SNPs_110093 0 0 0 0 1 CRAMP1 chr16:1716423 3'AG 1716423 Downstream 41bp
chrY 3447294 3447294 1 + C G PRAD 3447293 + 3447273 3447313 41 AGCCTCTTTGAATATGGAGGCCGCTGCAGACGGCCCGGCTG AGCCTCTTTGAATATGGAGGCGGCTGCAGACGGCCCGGCTG < 41bp 0.442037883266256 0.743783430956872 0.3813007 0.904666 prediction 0.487566861913744 Functional Gain - TGIF2LY ENSG00000176679 CDS Human protein_coding chrY:3447293 chrY:3447294 synonymous SNV . 0 22 hm5C_associated_SNPs_110097 0 0 0 0 1 TGIF2LY chrY:3447265 3'AG 3447265 Downstream 30bp
chr20 42697297 42697297 1 + C T SKCM 42697296 + 42697276 42697316 41 CCTCTCTCTCACAGCCTGCTCCCCAGGGACAAATCGCTCTA CCTCTCTCTCACAGCCTGCTCTCCAGGGACAAATCGCTCTA < 41bp 0.485118975651465 0.743782508895197 0.25501272 0.95454204 prediction 0.487565017790395 Functional Gain - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42697296 chr20:42697297 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_110099 0 0 0 0 1 TOX2 chr20:42697290 3'AG 42697290 Downstream 8bp
chr16 29820927 29820927 1 + C A COAD 29820923 + 29820903 29820943 41 ACCACGGGCTCCAGGCCCCGCGGGCTGACCGCATCCTGTGC ACCACGGGCTCCAGGCCCCGCGGGATGACCGCATCCTGTGC < 41bp 0.676312235698434 0.920083823274544 0.8346623 0.87977326 prediction 0.487543175152218 Functional Gain - MAZ ENSG00000103495 CDS Human protein_coding chr16:29820923 chr16:29820927 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_110101 0 0 1 0 1 MAZ chr16:29820861 3'AG 29820861 Downstream 67bp
chr16 31414878 31414878 1 + C T rs145982469 31414877 + 31414857 31414897 41 CACTTCACCTTCACCCAATTCCGGACCAGCCCGAGCCAGCA CACTTCACCTTCACCCAATTCTGGACCAGCCCGAGCCAGCA < 41bp 0.528834848801694 0.772585569960029 0.43067998 0.23415643 prediction 0.487501442316669 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31414877 chr16:31414878 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_110105 0 0 0 0 2 ITGAD chr16:31414821 3'AG 31414821 Downstream 58bp
chr16 31414878 31414878 1 + C T rs145982469 31414877 + 31414857 31414897 41 CACTTCACCTTCACCCAATTCCGGACCAGCCCGAGCCAGCA CACTTCACCTTCACCCAATTCTGGACCAGCCCGAGCCAGCA < 41bp 0.528834848801694 0.772585569960029 0.43067998 0.23415643 prediction 0.487501442316669 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31414877 chr16:31414878 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_110105 0 0 0 0 2 ITGAD chr16:31414966 5'GT 31414966 Upstream 89bp
chr12 6309673 6309673 1 + T A BRCA 6309669 + 6309649 6309689 41 CTAAGTTAGCCCTCACCATGCCGGTCAAAGGAGGCACCAAG CTAAGTTAGCCCTCACCATGCCGGACAAAGGAGGCACCAAG < 41bp 0.439089625596616 0.743742700969352 0.13612878 0.27547687 prediction 0.487485401938704 Functional Gain - CD9 ENSG00000010278 CDS Human protein_coding chr12:6309669 chr12:6309673 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_110108 0 0 1 0 1 CD9 chr12:6309731 5'GT 6309731 Upstream 59bp
chr21 43529758 43529758 1 + T G rs201993078 43529755 + 43529735 43529775 41 TGGAGGGCTCCTACACCTGCCAGTGCCGTACCACCAGGGAC TGGAGGGCTCCTACACCTGCCAGGGCCGTACCACCAGGGAC < 41bp 0.35093623471022 0.74372874971423 0.1821433 0.8931177 prediction 0.487457499428459 Functional Gain - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43529755 chr21:43529758 nonsynonymous SNV 0.932 5 24 hm5C_associated_SNPs_110110 0 0 0 0 1 UMODL1 chr21:43529672 3'AG 43529672 Downstream 87bp
chr19 55087490 55087490 1 + T C rs75028967 55087488 + 55087468 55087508 41 GGTCCTGTGACCTCAGCCCACGTGGGGACCTACAGATGCTA GGTCCTGTGACCTCAGCCCACGCGGGGACCTACAGATGCTA < 41bp 0.518928791164723 0.762654881639986 0.7168305 0.49725714 prediction 0.487452180950526 Functional Gain - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55087488 chr19:55087490 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_110111 0 0 0 0 1 LILRA2 chr19:55087576 5'GT 55087576 Upstream 87bp
chr11 60230511 60230511 1 + C A UCEC 60230510 + 60230490 60230530 41 AATGGGCTCTTCCACATTGCCCTGGGGGGTCTTCTGATGAT AATGGGCTCTTCCACATTGCCATGGGGGGTCTTCTGATGAT < 41bp 0.515555967094847 0.759281855175814 0.1972678 0.72249043 prediction 0.487451776161934 Functional Gain - MS4A1 ENSG00000156738 CDS Human protein_coding chr11:60230510 chr11:60230511 nonsynonymous SNV 0.989 2 22 hm5C_associated_SNPs_110112 0 0 0 0 2 MS4A1 chr11:60230475 3'AG 60230475 Downstream 37bp
chr11 60230511 60230511 1 + C A UCEC 60230510 + 60230490 60230530 41 AATGGGCTCTTCCACATTGCCCTGGGGGGTCTTCTGATGAT AATGGGCTCTTCCACATTGCCATGGGGGGTCTTCTGATGAT < 41bp 0.515555967094847 0.759281855175814 0.1972678 0.72249043 prediction 0.487451776161934 Functional Gain - MS4A1 ENSG00000156738 CDS Human protein_coding chr11:60230510 chr11:60230511 nonsynonymous SNV 0.989 2 22 hm5C_associated_SNPs_110112 0 0 0 0 2 MS4A1 chr11:60230594 5'GT 60230594 Upstream 84bp
chr19 17535789 17535789 1 + C G rs200479835 17535788 + 17535768 17535808 41 CCGCGGCTGCCCGCCTGCCCCCCAGCGTCTCATAGTCCCTC CCGCGGCTGCCCGCCTGCCCCGCAGCGTCTCATAGTCCCTC < 41bp 0.419726389644993 0.743718284492819 0.034331888 0.054868907 prediction 0.487436568985637 Functional Gain - MVB12A ENSG00000141971 CDS Human protein_coding chr19:17535788 chr19:17535789 nonsynonymous SNV 0.953 4 22 hm5C_associated_SNPs_110116 0 0 1 0 1 MVB12A chr19:17535740 3'AG 17535740 Downstream 50bp
chr15 50716645 50716645 1 + C G rs72738957 50716641 + 50716621 50716661 41 CCTGGTAGCCAAGGCTAATTCTCCCTCGAGTTCTTGGGAGA CCTGGTAGCCAAGGCTAATTCTCCGTCGAGTTCTTGGGAGA < 41bp 0.471830862495923 0.743716132704901 0.2569578 0.24670506 prediction 0.487432265409802 Functional Gain - USP8 ENSG00000138592 UTR5 Human protein_coding chr15:50716641 chr15:50716645 . . 0 25 hm5C_associated_SNPs_110118 0 0 1 0 1 USP8 chr15:50716711 5'GT 50716711 Upstream 67bp
chr9 27168544 27168544 1 + T C UCEC 27168542 + 27168522 27168562 41 ACTGTGGACAAGGGAGATAACGTGAACATATCTTTCAAAAA ACTGTGGACAAGGGAGATAACGCGAACATATCTTTCAAAAA < 41bp 0.578975180391554 0.822690328714746 0.0325391 0.03901705 prediction 0.487430296646385 Functional Gain - TEK ENSG00000120156 CDS Human protein_coding chr9:27168542 chr9:27168544 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_110119 0 0 0 0 2 TEK chr9:27168493 3'AG 27168493 Downstream 52bp
chr9 27168544 27168544 1 + T C UCEC 27168542 + 27168522 27168562 41 ACTGTGGACAAGGGAGATAACGTGAACATATCTTTCAAAAA ACTGTGGACAAGGGAGATAACGCGAACATATCTTTCAAAAA < 41bp 0.578975180391554 0.822690328714746 0.0325391 0.03901705 prediction 0.487430296646385 Functional Gain - TEK ENSG00000120156 CDS Human protein_coding chr9:27168542 chr9:27168544 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_110119 0 0 0 0 2 TEK chr9:27168603 5'GT 27168603 Upstream 60bp
chr19 10394801 10394801 1 + C T ACC 10394800 + 10394780 10394820 41 TGTTCCCTGGACGGGCTGTTCCCAGTCTCGGAGGCCCAGGT TGTTCCCTGGACGGGCTGTTCTCAGTCTCGGAGGCCCAGGT < 41bp 0.539676490355894 0.783381088098025 0.09278551 0.12110564 prediction 0.487409195484262 Functional Gain - ICAM1 ENSG00000090339 CDS Human protein_coding chr19:10394800 chr19:10394801 nonsynonymous SNV 0.007 4 22 hm5C_associated_SNPs_110122 0 0 1 0 1 ICAM1 chr19:10394709 3'AG 10394709 Downstream 93bp
chr17 55079471 55079471 1 + T C rs12940187 55079469 + 55079449 55079489 41 CCTGTACAGTGACCCTAAATCTTTGGAAACATCTGCTTTTG CCTGTACAGTGACCCTAAATCTCTGGAAACATCTGCTTTTG < 41bp 0.465882185746204 0.743703406509946 0.05797553 0.07346594 prediction 0.487406813019892 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55079469 chr17:55079471 synonymous SNV . 0 23 hm5C_associated_SNPs_110123 0 0 0 0 2 SCPEP1 chr17:55079379 3'AG 55079379 Downstream 93bp
chr17 55079471 55079471 1 + T C rs12940187 55079469 + 55079449 55079489 41 CCTGTACAGTGACCCTAAATCTTTGGAAACATCTGCTTTTG CCTGTACAGTGACCCTAAATCTCTGGAAACATCTGCTTTTG < 41bp 0.465882185746204 0.743703406509946 0.05797553 0.07346594 prediction 0.487406813019892 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55079469 chr17:55079471 synonymous SNV . 0 23 hm5C_associated_SNPs_110123 0 0 0 0 2 SCPEP1 chr17:55079542 5'GT 55079542 Upstream 72bp
chr7 2686861 2686861 1 + C A rs199819544 2686860 + 2686840 2686880 41 TACTCGCTCCGCCACGCCAACCGCACGGTGGCCGGGGTCCA TACTCGCTCCGCCACGCCAACAGCACGGTGGCCGGGGTCCA < 41bp 0.485402067408557 0.743702649829413 0.32997787 0.77583826 prediction 0.487405299658826 Functional Gain - TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686860 chr7:2686861 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_110124 0 0 1 0 2 TTYH3 chr7:2686776 3'AG 2686776 Downstream 86bp
chr7 2686861 2686861 1 + C A rs199819544 2686860 + 2686840 2686880 41 TACTCGCTCCGCCACGCCAACCGCACGGTGGCCGGGGTCCA TACTCGCTCCGCCACGCCAACAGCACGGTGGCCGGGGTCCA < 41bp 0.485402067408557 0.743702649829413 0.32997787 0.77583826 prediction 0.487405299658826 Functional Gain - TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686860 chr7:2686861 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_110124 0 0 1 0 2 TTYH3 chr7:2686887 5'GT 2686887 Upstream 27bp
chr15 90902093 90902093 1 + C A LUSC 90902089 + 90902069 90902109 41 ACATTCCTGTGTAGAATTTCCAGGCCTAGTGTAATCTCCCA ACATTCCTGTGTAGAATTTCCAGGACTAGTGTAATCTCCCA < 41bp 0.672751661006265 0.916449812030823 0.38985318 0.258073 prediction 0.487396302049116 Functional Gain - ZNF774 ENSG00000196391 CDS Human protein_coding chr15:90902089 chr15:90902093 nonsynonymous SNV 0.692 2 25 hm5C_associated_SNPs_110126 0 0 0 0 2 ZNF774 chr15:90902083 3'AG 90902083 Downstream 11bp
chr15 90902093 90902093 1 + C A LUSC 90902089 + 90902069 90902109 41 ACATTCCTGTGTAGAATTTCCAGGCCTAGTGTAATCTCCCA ACATTCCTGTGTAGAATTTCCAGGACTAGTGTAATCTCCCA < 41bp 0.672751661006265 0.916449812030823 0.38985318 0.258073 prediction 0.487396302049116 Functional Gain - ZNF774 ENSG00000196391 CDS Human protein_coding chr15:90902089 chr15:90902093 nonsynonymous SNV 0.692 2 25 hm5C_associated_SNPs_110126 0 0 0 0 2 ZNF774 chr15:90902189 5'GT 90902189 Upstream 97bp
chr20 61939994 61939994 1 + C A UCEC 61939993 + 61939973 61940013 41 TCTGGTGACGGACGGCAAGTCCCAGGACGATGTGCACACTG TCTGGTGACGGACGGCAAGTCACAGGACGATGTGCACACTG < 41bp 0.478316657964089 0.743691331466905 0.08073315 0.1811834 prediction 0.48738266293381 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61939993 chr20:61939994 synonymous SNV . 0 22 hm5C_associated_SNPs_110131 0 0 0 0 1 COL20A1 chr20:61940058 5'GT 61940058 Upstream 65bp
chr12 121154526 121154526 1 + C T GBM 121154525 + 121154505 121154545 41 ACACCGGCATTTCTCCGCCTCCGGACAGTCGGGGCTACGTG ACACCGGCATTTCTCCGCCTCTGGACAGTCGGGGCTACGTG < 41bp 0.519074354479439 0.762761963824561 0.24698812 0.093420416 prediction 0.487375218690245 Functional Gain - UNC119B ENSG00000175970 CDS Human protein_coding chr12:121154525 chr12:121154526 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_110135 0 0 1 0 2 UNC119B chr12:121154431 3'AG 121154431 Downstream 96bp
chr12 121154526 121154526 1 + C T GBM 121154525 + 121154505 121154545 41 ACACCGGCATTTCTCCGCCTCCGGACAGTCGGGGCTACGTG ACACCGGCATTTCTCCGCCTCTGGACAGTCGGGGCTACGTG < 41bp 0.519074354479439 0.762761963824561 0.24698812 0.093420416 prediction 0.487375218690245 Functional Gain - UNC119B ENSG00000175970 CDS Human protein_coding chr12:121154525 chr12:121154526 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_110135 0 0 1 0 2 UNC119B chr12:121154542 5'GT 121154542 Upstream 17bp
chr3 128627085 128627085 1 + C T CESC 128627084 + 128627064 128627104 41 ACGGGTCTGCAGCATGCCGGCCGCATCCTGACTACCAGGAT ACGGGTCTGCAGCATGCCGGCTGCATCCTGACTACCAGGAT < 41bp 0.478160048449098 0.74367940962284 0.14900586 0.13443112 prediction 0.487358819245679 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128627084 chr3:128627085 nonsynonymous SNV 0.371 2 22 hm5C_associated_SNPs_110138 0 0 1 0 2 ACAD9 chr3:128627028 3'AG 128627028 Downstream 58bp
chr3 128627085 128627085 1 + C T CESC 128627084 + 128627064 128627104 41 ACGGGTCTGCAGCATGCCGGCCGCATCCTGACTACCAGGAT ACGGGTCTGCAGCATGCCGGCTGCATCCTGACTACCAGGAT < 41bp 0.478160048449098 0.74367940962284 0.14900586 0.13443112 prediction 0.487358819245679 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128627084 chr3:128627085 nonsynonymous SNV 0.371 2 22 hm5C_associated_SNPs_110138 0 0 1 0 2 ACAD9 chr3:128627107 5'GT 128627107 Upstream 23bp
chr1 227149142 227149142 1 + C A SKCM 227149138 + 227149118 227149158 41 TGGCTAAAGGCCTTGTCAAGCTGACCCAGGCGGCCGTGGAA TGGCTAAAGGCCTTGTCAAGCTGAACCAGGCGGCCGTGGAA < 41bp 0.334941589875425 0.743671226191455 0.06821588 0.108205706 prediction 0.48734245238291 Functional Gain - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227149138 chr1:227149142 nonsynonymous SNV 0.914 1 25 hm5C_associated_SNPs_110139 0 0 1 0 2 COQ8A chr1:227149078 3'AG 227149078 Downstream 65bp
chr1 227149142 227149142 1 + C A SKCM 227149138 + 227149118 227149158 41 TGGCTAAAGGCCTTGTCAAGCTGACCCAGGCGGCCGTGGAA TGGCTAAAGGCCTTGTCAAGCTGAACCAGGCGGCCGTGGAA < 41bp 0.334941589875425 0.743671226191455 0.06821588 0.108205706 prediction 0.48734245238291 Functional Gain - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227149138 chr1:227149142 nonsynonymous SNV 0.914 1 25 hm5C_associated_SNPs_110139 0 0 1 0 2 COQ8A chr1:227149127 3'AG 227149127 Downstream 16bp
chr3 183778023 183778023 1 + C A LUAD 183778022 + 183778002 183778042 41 GGGCTCAGGATGGACAAAGACCCAGCTAATGGAGCTGTGGG GGGCTCAGGATGGACAAAGACACAGCTAATGGAGCTGTGGG < 41bp 0.521012841571168 0.764679382737909 0.16494572 0.16225865 prediction 0.487333082333483 Functional Gain - HTR3C ENSG00000178084 CDS Human protein_coding chr3:183778022 chr3:183778023 synonymous SNV . 0 22 hm5C_associated_SNPs_110140 0 0 0 0 1 HTR3C chr3:183777938 3'AG 183777938 Downstream 86bp
chr17 61936975 61936975 1 + C A rs542008506 61936974 + 61936954 61936994 41 AGCTCACCCATCAGAATAGTCCGGATCTTTGGTGAGTCAGA AGCTCACCCATCAGAATAGTCAGGATCTTTGGTGAGTCAGA < 41bp 0.528069026303646 0.771735153220992 0.8826809 0.9305434 prediction 0.487332253834692 Functional Gain - TCAM1P ENSG00000240280 ncRNA_exonic Human transcribed_unitary_pseudogene chr17:61936974 chr17:61936975 . . 0 22 hm5C_associated_SNPs_110141 0 0 0 0 1 TCAM1P chr17:61936984 5'GT 61936984 Upstream 10bp
chr19 48517499 48517499 1 + A G LIHC 48517496 + 48517476 48517516 41 ACTTCACTTGCACCCATATTCATAGCTTATCCCCTTGGTGT ACTTCACTTGCACCCATATTCATGGCTTATCCCCTTGGTGT < 41bp 0.503262496777346 0.746923697019472 0.36460555 0.8466539 prediction 0.487322400484251 Functional Gain - ELSPBP1 ENSG00000169393 CDS Human protein_coding chr19:48517496 chr19:48517499 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_110142 0 0 0 0 2 ELSPBP1 chr19:48517428 3'AG 48517428 Downstream 72bp
chr19 48517499 48517499 1 + A G LIHC 48517496 + 48517476 48517516 41 ACTTCACTTGCACCCATATTCATAGCTTATCCCCTTGGTGT ACTTCACTTGCACCCATATTCATGGCTTATCCCCTTGGTGT < 41bp 0.503262496777346 0.746923697019472 0.36460555 0.8466539 prediction 0.487322400484251 Functional Gain - ELSPBP1 ENSG00000169393 CDS Human protein_coding chr19:48517496 chr19:48517499 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_110142 0 0 0 0 2 ELSPBP1 chr19:48517565 5'GT 48517565 Upstream 67bp
chr3 8590323 8590323 1 + C T UCEC 8590322 + 8590302 8590342 41 GGCACAGAGGGTGCCTTTTACCGCCGCCGCCAGCTCATGCA GGCACAGAGGGTGCCTTTTACTGCCGCCGCCAGCTCATGCA < 41bp 0.53472541772307 0.778385537179952 0.79100484 0.2950147 prediction 0.487320238913765 Functional Gain - LMCD1 ENSG00000071282 CDS Human protein_coding chr3:8590322 chr3:8590323 nonsynonymous SNV 0.967 5 22 hm5C_associated_SNPs_110143 0 0 0 0 1 LMCD1 chr3:8590254 3'AG 8590254 Downstream 70bp
chr7 142481888 142481888 1 + T C GBM 142481886 + 142481866 142481906 41 ACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCC ACATGTTCTGTGTGGGCTTCCTCGAGGGAGGCAAGGATTCC < 41bp 0.545901027293825 0.789559344133301 0.29021412 0.42946535 prediction 0.48731663367895 Functional Gain - PRSS3P2 ENSG00000250606 ncRNA_exonic Human other chr7:142481886 chr7:142481888 . . 0 23 hm5C_associated_SNPs_110144 0 0 0 0 1 PRSS3P2 chr7:142481912 5'GT 142481912 Upstream 25bp
chr2 96071494 96071494 1 + C T STAD 96071493 + 96071473 96071513 41 ATGCCTTTGACCCCACACTCCCGAAGACGATGACGCAGTTC ATGCCTTTGACCCCACACTCCTGAAGACGATGACGCAGTTC < 41bp 0.526435634289382 0.770088535435614 0.27750716 0.2587142 prediction 0.487305802292464 Functional Gain - FAHD2A ENSG00000115042 CDS Human protein_coding chr2:96071493 chr2:96071494 nonsynonymous SNV 0.594 4 22 hm5C_associated_SNPs_110147 0 0 0 0 1 FAHD2A chr2:96071551 5'GT 96071551 Upstream 58bp
chr1 26524503 26524503 1 + C A rs199601379 26524502 + 26524482 26524522 41 GAGCCCCTCGCCCGGATCATCCGCGTCATCCTGCAGTCGGT GAGCCCCTCGCCCGGATCATCAGCGTCATCCTGCAGTCGGT < 41bp 0.557283070333483 0.800929055088995 0.5955384 0.9154799 prediction 0.487291969511023 Functional Gain - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26524502 chr1:26524503 nonsynonymous SNV 0.323 3 22 hm5C_associated_SNPs_110148 0 0 0 0 2 CATSPER4 chr1:26524448 3'AG 26524448 Downstream 56bp
chr1 26524503 26524503 1 + C A rs199601379 26524502 + 26524482 26524522 41 GAGCCCCTCGCCCGGATCATCCGCGTCATCCTGCAGTCGGT GAGCCCCTCGCCCGGATCATCAGCGTCATCCTGCAGTCGGT < 41bp 0.557283070333483 0.800929055088995 0.5955384 0.9154799 prediction 0.487291969511023 Functional Gain - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26524502 chr1:26524503 nonsynonymous SNV 0.323 3 22 hm5C_associated_SNPs_110148 0 0 0 0 2 CATSPER4 chr1:26524568 5'GT 26524568 Upstream 66bp
chrX 70375069 70375069 1 + C T UCEC 70375068 + 70375048 70375088 41 CCCCTTCTCCTTGCAGACATCCGGGACAGTGGTGCTAAACC CCCCTTCTCCTTGCAGACATCTGGGACAGTGGTGCTAAACC < 41bp 0.504697149685794 0.748331054473617 0.90805036 0.81216455 prediction 0.487267809575648 Functional Gain - NLGN3 ENSG00000196338 CDS Human protein_coding chrX:70375068 chrX:70375069 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_110151 1 0 0 0 1 NLGN3 chrX:70375064 3'AG 70375064 Downstream 6bp
chr15 79755573 79755573 1 + C A rs61746219 79755572 + 79755552 79755592 41 CATGCGGCTGACCGAGTTGGCCGAGGTGAAGCGGGGCCAAC CATGCGGCTGACCGAGTTGGCAGAGGTGAAGCGGGGCCAAC < 41bp 0.544627941766319 0.788254709434624 0.8888217 0.90533334 prediction 0.48725353533661 Functional Gain - KIAA1024 ENSG00000169330 CDS Human protein_coding chr15:79755572 chr15:79755573 synonymous SNV . 0 22 hm5C_associated_SNPs_110156 0 0 1 0 1 KIAA1024 chr15:79755663 5'GT 79755663 Upstream 91bp
chr16 23768582 23768582 1 + C T COAD 23768581 + 23768561 23768601 41 CAGCTGGAGAACATCGCTGACCGCACGGTGCAGGAGGCTGA CAGCTGGAGAACATCGCTGACTGCACGGTGCAGGAGGCTGA < 41bp 0.554658138979229 0.798283596502297 0.31582242 0.5584231 prediction 0.487250915046135 Functional Gain - CHP2 ENSG00000166869 CDS Human protein_coding chr16:23768581 chr16:23768582 nonsynonymous SNV 0.680 4 22 hm5C_associated_SNPs_110157 0 0 0 0 2 CHP2 chr16:23768522 3'AG 23768522 Downstream 61bp
chr16 23768582 23768582 1 + C T COAD 23768581 + 23768561 23768601 41 CAGCTGGAGAACATCGCTGACCGCACGGTGCAGGAGGCTGA CAGCTGGAGAACATCGCTGACTGCACGGTGCAGGAGGCTGA < 41bp 0.554658138979229 0.798283596502297 0.31582242 0.5584231 prediction 0.487250915046135 Functional Gain - CHP2 ENSG00000166869 CDS Human protein_coding chr16:23768581 chr16:23768582 nonsynonymous SNV 0.680 4 22 hm5C_associated_SNPs_110157 0 0 0 0 2 CHP2 chr16:23768644 5'GT 23768644 Upstream 63bp
chr10 8100349 8100349 1 + C A LUSC 8100345 + 8100325 8100365 41 GCAAAGCCCTGGGCAGCCACCACACCGCCTCCCCCTGGAAT GCAAAGCCCTGGGCAGCCACCACAACGCCTCCCCCTGGAAT < 41bp 0.326409460630814 0.74362056786486 0.13133833 0.09134334 prediction 0.487241135729719 Functional Gain - GATA3 ENSG00000107485 CDS Human protein_coding chr10:8100345 chr10:8100349 nonsynonymous SNV 0.969 1 25 hm5C_associated_SNPs_110158 0 0 0 0 1 GATA3 chr10:8100268 3'AG 8100268 Downstream 82bp
chr5 153795487 153795487 1 + C T CESC 153795486 + 153795466 153795506 41 GGCAACCAGCTGTGGAAATACCGCAAAGTAAGATGGGATGC GGCAACCAGCTGTGGAAATACTGCAAAGTAAGATGGGATGC < 41bp 0.510220034245994 0.753836433900175 0.737015 0.8915553 prediction 0.487232799308361 Functional Gain - GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153795486 chr5:153795487 nonsynonymous SNV 0.957 3 22 hm5C_associated_SNPs_110159 0 0 0 0 1 GALNT10 chr5:153795492 5'GT 153795492 Upstream 6bp
chr11 63283049 63283049 1 + T C UCEC 63283047 + 63283027 63283067 41 TCCTGCAGTTTTACTGTGAGCCTGAGGGACCAGGCTGCCCA TCCTGCAGTTTTACTGTGAGCCCGAGGGACCAGGCTGCCCA < 41bp 0.57174014648338 0.815353969009511 0.50922203 0.5942914 prediction 0.487227645052262 Functional Gain - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63283047 chr11:63283049 nonsynonymous SNV 0.669 4 23 hm5C_associated_SNPs_110160 0 0 0 0 1 LGALS12 chr11:63283035 3'AG 63283035 Downstream 15bp
chr3 14174433 14174433 1 + C A THCA 14174432 + 14174412 14174452 41 AGAGATTGGCCACAAAAACCCCAGGTGAGAGCCAGGCCCAA AGAGATTGGCCACAAAAACCCAAGGTGAGAGCCAGGCCCAA < 41bp 0.477949626772493 0.743610419562058 0.6783928 0.8105351 prediction 0.487220839124116 Functional Gain - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14174432 chr3:14174433 synonymous SNV . 0 22 hm5C_associated_SNPs_110161 0 0 1 0 2 TMEM43 chr3:14174366 3'AG 14174366 Downstream 68bp
chr3 14174433 14174433 1 + C A THCA 14174432 + 14174412 14174452 41 AGAGATTGGCCACAAAAACCCCAGGTGAGAGCCAGGCCCAA AGAGATTGGCCACAAAAACCCAAGGTGAGAGCCAGGCCCAA < 41bp 0.477949626772493 0.743610419562058 0.6783928 0.8105351 prediction 0.487220839124116 Functional Gain - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14174432 chr3:14174433 synonymous SNV . 0 22 hm5C_associated_SNPs_110161 0 0 1 0 2 TMEM43 chr3:14174435 5'GT 14174435 Upstream 3bp
chr3 50684208 50684208 1 + C T LUAD 50684207 + 50684187 50684227 41 CCTCCTGTTGAAGACAGACCCCACAGAGAGGCTGACCATCA CCTCCTGTTGAAGACAGACCCTACAGAGAGGCTGACCATCA < 41bp 0.569721471824495 0.813325069422846 0.022387236 0.29270327 prediction 0.487207195196701 Functional Gain - MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50684207 chr3:50684208 synonymous SNV . 0 22 hm5C_associated_SNPs_110162 0 0 1 0 2 MAPKAPK3 chr3:50684171 3'AG 50684171 Downstream 38bp
chr3 50684208 50684208 1 + C T LUAD 50684207 + 50684187 50684227 41 CCTCCTGTTGAAGACAGACCCCACAGAGAGGCTGACCATCA CCTCCTGTTGAAGACAGACCCTACAGAGAGGCTGACCATCA < 41bp 0.569721471824495 0.813325069422846 0.022387236 0.29270327 prediction 0.487207195196701 Functional Gain - MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50684207 chr3:50684208 synonymous SNV . 0 22 hm5C_associated_SNPs_110162 0 0 1 0 2 MAPKAPK3 chr3:50684256 5'GT 50684256 Upstream 49bp
chr11 71800203 71800203 1 + T A OV 71800199 + 71800179 71800219 41 ACTACTCCTTCAGAAGCATCCACGTCATTCAAGGTCAGCCC ACTACTCCTTCAGAAGCATCCACGACATTCAAGGTCAGCCC < 41bp 0.541137257713842 0.784737682473225 0.18148321 0.1250377 prediction 0.487200849518765 Functional Gain - LRTOMT ENSG00000184154 CDS Human protein_coding chr11:71800199 chr11:71800203 nonsynonymous SNV 0.033 0 25 hm5C_associated_SNPs_110163 0 0 0 0 1 LRTOMT chr11:71800211 5'GT 71800211 Upstream 9bp
chr2 98996743 98996743 1 + T G SKCM 98996741 + 98996721 98996761 41 ATCGTTTCCGTGGAGCCGAGCTTAAGGAGGTGTCCAGCCAA ATCGTTTCCGTGGAGCCGAGCTGAAGGAGGTGTCCAGCCAA < 41bp 0.39104907289162 0.743597943389484 0.3640648 0.8567862 prediction 0.487195886778968 Functional Gain - CNGA3 ENSG00000144191 CDS Human protein_coding chr2:98996741 chr2:98996743 synonymous SNV . 0 23 hm5C_associated_SNPs_110164 0 0 0 0 1 CNGA3 chr2:98996817 5'GT 98996817 Upstream 75bp
chr3 132071625 132071625 1 + C A LUAD 132071624 + 132071604 132071644 41 TTTACAACGGACTCCTTCCTCCCTATGCTTCTTGCCACTTG TTTACAACGGACTCCTTCCTCACTATGCTTCTTGCCACTTG < 41bp 0.52847413279238 0.772068065376347 0.044511765 0.14505833 prediction 0.487187865167935 Functional Gain - ACPP ENSG00000014257 CDS Human protein_coding chr3:132071624 chr3:132071625 nonsynonymous SNV 0.273 4 22 hm5C_associated_SNPs_110166 0 0 0 0 2 ACPP chr3:132071564 3'AG 132071564 Downstream 62bp
chr3 132071625 132071625 1 + C A LUAD 132071624 + 132071604 132071644 41 TTTACAACGGACTCCTTCCTCCCTATGCTTCTTGCCACTTG TTTACAACGGACTCCTTCCTCACTATGCTTCTTGCCACTTG < 41bp 0.52847413279238 0.772068065376347 0.044511765 0.14505833 prediction 0.487187865167935 Functional Gain - ACPP ENSG00000014257 CDS Human protein_coding chr3:132071624 chr3:132071625 nonsynonymous SNV 0.273 4 22 hm5C_associated_SNPs_110166 0 0 0 0 2 ACPP chr3:132071667 5'GT 132071667 Upstream 43bp
chr16 84695266 84695266 1 + C T LUAD 84695265 + 84695245 84695285 41 GACTACCAAATTGGCCCCTACCGCAAGAACCTGCTATGCTA GACTACCAAATTGGCCCCTACTGCAAGAACCTGCTATGCTA < 41bp 0.48702757738632 0.74358158485604 0.24005336 0.41761062 prediction 0.487163169712079 Functional Gain - KLHL36 ENSG00000135686 CDS Human protein_coding chr16:84695265 chr16:84695266 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_110169 0 0 1 0 1 KLHL36 chr16:84695184 3'AG 84695184 Downstream 83bp
chr10 7763666 7763666 1 + C T LUAD 7763665 + 7763645 7763685 41 CAGAGAATATGCCCTAACTGCCGGGAGACTGCGGTAGATGG CAGAGAATATGCCCTAACTGCTGGGAGACTGCGGTAGATGG < 41bp 0.499264233566432 0.743578711580595 0.7878853 0.41726932 prediction 0.48715742316119 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7763665 chr10:7763666 nonsynonymous SNV 0.004 2 22 hm5C_associated_SNPs_110171 0 0 1 0 2 ITIH2 chr10:7763612 3'AG 7763612 Downstream 55bp
chr10 7763666 7763666 1 + C T LUAD 7763665 + 7763645 7763685 41 CAGAGAATATGCCCTAACTGCCGGGAGACTGCGGTAGATGG CAGAGAATATGCCCTAACTGCTGGGAGACTGCGGTAGATGG < 41bp 0.499264233566432 0.743578711580595 0.7878853 0.41726932 prediction 0.48715742316119 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7763665 chr10:7763666 nonsynonymous SNV 0.004 2 22 hm5C_associated_SNPs_110171 0 0 1 0 2 ITIH2 chr10:7763740 5'GT 7763740 Upstream 75bp
chr1 111029564 111029564 1 + C A rs115083670 111029560 + 111029540 111029580 41 GGGTCTGAGCACCCAGGAACCTGGCGACGTCTTCACCTACT GGGTCTGAGCACCCAGGAACCTGGAGACGTCTTCACCTACT < 41bp 0.667059186131406 0.910636196162288 0.43071052 0.8471037 prediction 0.487154020061764 Functional Gain - CYMP ENSG00000240194 ncRNA_exonic Human transcribed_unitary_pseudogene chr1:111029560 chr1:111029564 . . 0 25 hm5C_associated_SNPs_110172 0 0 0 0 1 CYMP chr1:111029508 3'AG 111029508 Downstream 57bp
chr9 113547146 113547146 1 + C A SKCM 113547142 + 113547122 113547162 41 CAAGTGTGGACATTCCAAATCTGCCTTCCTCCTCCTCTTCT CAAGTGTGGACATTCCAAATCTGCATTCCTCCTCCTCTTCT < 41bp 0.312131361985748 0.743559591016066 0.11391601 0.21458021 prediction 0.487119182032132 Functional Gain - MUSK ENSG00000030304 CDS Human protein_coding chr9:113547142 chr9:113547146 nonsynonymous SNV 0.941 2 25 hm5C_associated_SNPs_110174 0 0 0 0 1 MUSK chr9:113547095 3'AG 113547095 Downstream 52bp
chr17 37818555 37818555 1 + C T SKCM 37818554 + 37818534 37818574 41 GCTCAAGTCGGCCAGTAACCCCCGTGTTTGCACCTTTGTCT GCTCAAGTCGGCCAGTAACCCTCGTGTTTGCACCTTTGTCT < 41bp 0.490442499425051 0.743549598187797 0.21581727 0.2499603 prediction 0.487099196375594 Functional Gain - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37818554 chr17:37818555 synonymous SNV . 0 22 hm5C_associated_SNPs_110179 0 0 1 4 2 STARD3 chr17:37818504 3'AG 37818504 Downstream 52bp
chr17 37818555 37818555 1 + C T SKCM 37818554 + 37818534 37818574 41 GCTCAAGTCGGCCAGTAACCCCCGTGTTTGCACCTTTGTCT GCTCAAGTCGGCCAGTAACCCTCGTGTTTGCACCTTTGTCT < 41bp 0.490442499425051 0.743549598187797 0.21581727 0.2499603 prediction 0.487099196375594 Functional Gain - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37818554 chr17:37818555 synonymous SNV . 0 22 hm5C_associated_SNPs_110179 0 0 1 4 2 STARD3 chr17:37818597 5'GT 37818597 Upstream 43bp
chr17 4620555 4620555 1 + C A SKCM 4620554 + 4620534 4620574 41 CCGTCACACTGCAGCCAGGCCCAGAGGATACAGGAAAGGTA CCGTCACACTGCAGCCAGGCCAAGAGGATACAGGAAAGGTA < 41bp 0.476457690648911 0.743519565790419 0.44371322 0.40222192 prediction 0.487039131580839 Functional Gain - ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4620554 chr17:4620555 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_110184 0 0 1 0 2 ARRB2 chr17:4620512 3'AG 4620512 Downstream 44bp
chr17 4620555 4620555 1 + C A SKCM 4620554 + 4620534 4620574 41 CCGTCACACTGCAGCCAGGCCCAGAGGATACAGGAAAGGTA CCGTCACACTGCAGCCAGGCCAAGAGGATACAGGAAAGGTA < 41bp 0.476457690648911 0.743519565790419 0.44371322 0.40222192 prediction 0.487039131580839 Functional Gain - ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4620554 chr17:4620555 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_110184 0 0 1 0 2 ARRB2 chr17:4620571 5'GT 4620571 Upstream 17bp
chr1 150471087 150471087 1 + C T UCEC 150471086 + 150471066 150471106 41 GGTGGTCTGGGGGGACTGACCCGACTGCGGTGCTTCCAGCA GGTGGTCTGGGGGGACTGACCTGACTGCGGTGCTTCCAGCA < 41bp 0.501525883851622 0.745044854143828 0.3183271 0.44196483 prediction 0.487037940584412 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150471086 chr1:150471087 stopgain 0.466 1 22 hm5C_associated_SNPs_110185 0 0 1 0 1 TARS2 chr1:150471140 5'GT 150471140 Upstream 54bp
chr11 85342819 85342819 1 + T C GBM 85342817 + 85342797 85342837 41 AGACCAATGGTCATAGAAATCATAGAAAAAAATTTTGACTA AGACCAATGGTCATAGAAATCACAGAAAAAAATTTTGACTA < 41bp 0.488471107635719 0.743507959679149 0.22560564 0.22367033 prediction 0.487015919358297 Functional Gain - TMEM126B ENSG00000171204 CDS Human protein_coding chr11:85342817 chr11:85342819 nonsynonymous SNV 0.991 1 23 hm5C_associated_SNPs_110187 0 0 1 0 2 TMEM126B chr11:85342731 3'AG 85342731 Downstream 89bp
chr11 85342819 85342819 1 + T C GBM 85342817 + 85342797 85342837 41 AGACCAATGGTCATAGAAATCATAGAAAAAAATTTTGACTA AGACCAATGGTCATAGAAATCACAGAAAAAAATTTTGACTA < 41bp 0.488471107635719 0.743507959679149 0.22560564 0.22367033 prediction 0.487015919358297 Functional Gain - TMEM126B ENSG00000171204 CDS Human protein_coding chr11:85342817 chr11:85342819 nonsynonymous SNV 0.991 1 23 hm5C_associated_SNPs_110187 0 0 1 0 2 TMEM126B chr11:85342852 5'GT 85342852 Upstream 34bp
chrX 10094324 10094324 1 + C T COAD 10094323 + 10094303 10094343 41 TATACGTGTGTTCAGTGACTCCGCAGCTGCAGGAAGAACTG TATACGTGTGTTCAGTGACTCTGCAGCTGCAGGAAGAACTG < 41bp 0.511760568444672 0.755260945224671 0.3651981 0.48038277 prediction 0.487000753559998 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10094323 chrX:10094324 nonsynonymous SNV 0.094 0 22 hm5C_associated_SNPs_110191 0 0 0 0 1 WWC3 chrX:10094346 5'GT 10094346 Upstream 23bp
chr22 25007189 25007189 1 + C G OV 25007188 + 25007168 25007208 41 GGCTGCCGTGGCCGCGGATGCCAAGCAGTGCTCGAAGATTG GGCTGCCGTGGCCGCGGATGCGAAGCAGTGCTCGAAGATTG < 41bp 0.427860636429395 0.743499712995605 0.1644293 0.48395357 prediction 0.486999425991211 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25007188 chr22:25007189 synonymous SNV . 0 22 hm5C_associated_SNPs_110193 0 0 0 0 1 GGT1 chr22:25007212 5'GT 25007212 Upstream 24bp
chr5 72424316 72424316 1 + C T COAD 72424315 + 72424295 72424335 41 CTGGAACTAACAGTCTGCTTCCGAATGAAAACCCCCCTTCA CTGGAACTAACAGTCTGCTTCTGAATGAAAACCCCCCTTCA < 41bp 0.521384839094336 0.764882054784976 0.5561145 0.3164846 prediction 0.486994431381279 Functional Gain - TMEM171 ENSG00000157111 CDS Human protein_coding chr5:72424315 chr5:72424316 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_110194 0 0 0 0 2 TMEM171 chr5:72424217 3'AG 72424217 Downstream 100bp
chr5 72424316 72424316 1 + C T COAD 72424315 + 72424295 72424335 41 CTGGAACTAACAGTCTGCTTCCGAATGAAAACCCCCCTTCA CTGGAACTAACAGTCTGCTTCTGAATGAAAACCCCCCTTCA < 41bp 0.521384839094336 0.764882054784976 0.5561145 0.3164846 prediction 0.486994431381279 Functional Gain - TMEM171 ENSG00000157111 CDS Human protein_coding chr5:72424315 chr5:72424316 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_110194 0 0 0 0 2 TMEM171 chr5:72424358 5'GT 72424358 Upstream 43bp
chr14 64896929 64896929 1 + A G CESC 64896926 + 64896906 64896946 41 CGCTGCAGGAGGCGGCTACTCCCAGGTCATTCCTATGGAAG CGCTGCAGGAGGCGGCTACTCCCGGGTCATTCCTATGGAAG < 41bp 0.519312981417977 0.762798345668134 0.29461795 0.89379776 prediction 0.486970728500314 Functional Gain - MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64896926 chr14:64896929 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_110195 0 0 1 0 2 MTHFD1 chr14:64896902 3'AG 64896902 Downstream 28bp
chr14 64896929 64896929 1 + A G CESC 64896926 + 64896906 64896946 41 CGCTGCAGGAGGCGGCTACTCCCAGGTCATTCCTATGGAAG CGCTGCAGGAGGCGGCTACTCCCGGGTCATTCCTATGGAAG < 41bp 0.519312981417977 0.762798345668134 0.29461795 0.89379776 prediction 0.486970728500314 Functional Gain - MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64896926 chr14:64896929 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_110195 0 0 1 0 2 MTHFD1 chr14:64896948 5'GT 64896948 Upstream 20bp
chr2 95944813 95944813 1 + C T STAD 95944812 + 95944792 95944832 41 CCGGGCTTGGAGGCAGCTTCCCGCTGGGCCCAGGCACTGCA CCGGGCTTGGAGGCAGCTTCCTGCTGGGCCCAGGCACTGCA < 41bp 0.515568020981559 0.759045640277399 0.17479002 0.13802463 prediction 0.48695523859168 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95944812 chr2:95944813 nonsynonymous SNV 0.279 1 22 hm5C_associated_SNPs_110196 0 0 0 0 2 PROM2 chr2:95944733 3'AG 95944733 Downstream 81bp
chr2 95944813 95944813 1 + C T STAD 95944812 + 95944792 95944832 41 CCGGGCTTGGAGGCAGCTTCCCGCTGGGCCCAGGCACTGCA CCGGGCTTGGAGGCAGCTTCCTGCTGGGCCCAGGCACTGCA < 41bp 0.515568020981559 0.759045640277399 0.17479002 0.13802463 prediction 0.48695523859168 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95944812 chr2:95944813 nonsynonymous SNV 0.279 1 22 hm5C_associated_SNPs_110196 0 0 0 0 2 PROM2 chr2:95944892 5'GT 95944892 Upstream 80bp
chr3 38042986 38042986 1 + C T CESC 38042985 + 38042965 38043005 41 TTACACAGGCAGCCCGTGGACCCCAAGCGTCATGGACAGCT TTACACAGGCAGCCCGTGGACTCCAAGCGTCATGGACAGCT < 41bp 0.568216866242286 0.811689183618835 0.07245475 0.9357194 prediction 0.486944634753097 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38042985 chr3:38042986 nonsynonymous SNV 0.010 0 22 hm5C_associated_SNPs_110198 0 0 1 0 2 VILL chr3:38042947 3'AG 38042947 Downstream 40bp
chr3 38042986 38042986 1 + C T CESC 38042985 + 38042965 38043005 41 TTACACAGGCAGCCCGTGGACCCCAAGCGTCATGGACAGCT TTACACAGGCAGCCCGTGGACTCCAAGCGTCATGGACAGCT < 41bp 0.568216866242286 0.811689183618835 0.07245475 0.9357194 prediction 0.486944634753097 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38042985 chr3:38042986 nonsynonymous SNV 0.010 0 22 hm5C_associated_SNPs_110198 0 0 1 0 2 VILL chr3:38043084 5'GT 38043084 Upstream 99bp
chr22 21823623 21823623 1 + C G rs528396288 21823622 + 21823602 21823642 41 ATCGCTCATGGAGGAGATGGCCAGGGCGGACCGAGTGAGCG ATCGCTCATGGAGGAGATGGCGAGGGCGGACCGAGTGAGCG < 41bp 0.605909659837708 0.849380215456628 0.8229463 0.9043547 prediction 0.48694111123784 Functional Gain - TMEM191C ENSG00000206140 ncRNA_exonic Human protein_coding chr22:21823622 chr22:21823623 . . 0 22 hm5C_associated_SNPs_110199 0 0 0 0 1 TMEM191C chr22:21823563 3'AG 21823563 Downstream 61bp
chr12 72335435 72335435 1 + C T UCEC 72335434 + 72335414 72335454 41 CAGCAAACGTGAAGCTGCTACCGAAAGTGGCAAGACAGCAG CAGCAAACGTGAAGCTGCTACTGAAAGTGGCAAGACAGCAG < 41bp 0.509787981650524 0.753258205297641 0.4019019 0.2605437 prediction 0.486940447294233 Functional Gain - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72335434 chr12:72335435 synonymous SNV . 0 22 hm5C_associated_SNPs_110200 0 0 0 0 2 TPH2 chr12:72335364 3'AG 72335364 Downstream 72bp
chr12 72335435 72335435 1 + C T UCEC 72335434 + 72335414 72335454 41 CAGCAAACGTGAAGCTGCTACCGAAAGTGGCAAGACAGCAG CAGCAAACGTGAAGCTGCTACTGAAAGTGGCAAGACAGCAG < 41bp 0.509787981650524 0.753258205297641 0.4019019 0.2605437 prediction 0.486940447294233 Functional Gain - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72335434 chr12:72335435 synonymous SNV . 0 22 hm5C_associated_SNPs_110200 0 0 0 0 2 TPH2 chr12:72335513 5'GT 72335513 Upstream 79bp
chr3 44607107 44607107 1 + T A STAD 44607103 + 44607083 44607123 41 CCCTGGAGCCCACCTGGAGCCTCCTTATGACCCAGGGACAC CCCTGGAGCCCACCTGGAGCCTCCATATGACCCAGGGACAC < 41bp 0.64350274828873 0.886972803336186 0.06828612 0.9645386 prediction 0.486940110094912 Functional Gain - ZKSCAN7 ENSG00000196345;ENSG00000273303 CDS Human other chr3:44607103 chr3:44607107 synonymous SNV . 0 25 hm5C_associated_SNPs_110201 0 0 0 0 1 ZKSCAN7 chr3:44607147 5'GT 44607147 Upstream 41bp
chr12 51090954 51090954 1 + C T UCEC 51090953 + 51090933 51090973 41 GAAGCCATGACTGTAGCAATCCGCAGGTACTGTTCAGGATG GAAGCCATGACTGTAGCAATCTGCAGGTACTGTTCAGGATG < 41bp 0.516063493828584 0.759514440368967 0.3622765 0.25793225 prediction 0.486901893080765 Functional Gain - DIP2B ENSG00000066084 CDS Human protein_coding chr12:51090953 chr12:51090954 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_110203 0 0 1 0 1 DIP2B chr12:51090958 5'GT 51090958 Upstream 5bp
chr5 177547613 177547613 1 + C G rs144684333 177547609 + 177547589 177547629 41 CTACGAGTTCTCCTGCTCCTCTGCCGAGGAAATGGGAGCCG CTACGAGTTCTCCTGCTCCTCTGCGGAGGAAATGGGAGCCG < 41bp 0.585514486334487 0.828959064833462 0.28290224 0.3666277 prediction 0.486889156997951 Functional Gain - N4BP3 ENSG00000145911 CDS Human protein_coding chr5:177547609 chr5:177547613 synonymous SNV . 0 25 hm5C_associated_SNPs_110204 0 0 0 0 1 N4BP3 chr5:177547700 5'GT 177547700 Upstream 88bp
chr11 64138127 64138127 1 + C T SKCM 64138126 + 64138106 64138146 41 GGCAGCGCGCGCTCCTCGCCCCCGCTCCGGACGCCCGACGT GGCAGCGCGCGCTCCTCGCCCTCGCTCCGGACGCCCGACGT < 41bp 0.499476982751628 0.743442596886795 0.3798142 0.37293595 prediction 0.486885193773591 Functional Gain - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64138126 chr11:64138127 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_110206 0 0 0 0 2 RPS6KA4 chr11:64138035 3'AG 64138035 Downstream 93bp
chr11 64138127 64138127 1 + C T SKCM 64138126 + 64138106 64138146 41 GGCAGCGCGCGCTCCTCGCCCCCGCTCCGGACGCCCGACGT GGCAGCGCGCGCTCCTCGCCCTCGCTCCGGACGCCCGACGT < 41bp 0.499476982751628 0.743442596886795 0.3798142 0.37293595 prediction 0.486885193773591 Functional Gain - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64138126 chr11:64138127 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_110206 0 0 0 0 2 RPS6KA4 chr11:64138198 5'GT 64138198 Upstream 72bp
chr9 127994881 127994881 1 + T C STAD 127994879 + 127994859 127994899 41 TTCTTTCTCTTGGCAGGTGACATGAAATGGCAGAAGCTAAA TTCTTTCTCTTGGCAGGTGACACGAAATGGCAGAAGCTAAA < 41bp 0.552755035669657 0.796197540255567 0.34721595 0.27443522 prediction 0.486885009171821 Functional Gain - RABEPK ENSG00000136933 CDS Human protein_coding chr9:127994879 chr9:127994881 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_110207 0 0 0 0 1 RABEPK chr9:127994875 3'AG 127994875 Downstream 7bp
chrX 10180510 10180510 1 + C T UCEC 10180509 + 10180489 10180529 41 TCTCTGTGTCTCCTCAAGATCCCGTCGGGCCTCTTCATCCC TCTCTGTGTCTCCTCAAGATCTCGTCGGGCCTCTTCATCCC < 41bp 0.539493245568721 0.782926994421285 0.008797169 0.06702927 prediction 0.486867497705127 Functional Gain - CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10180509 chrX:10180510 nonsynonymous SNV 0.389 5 22 hm5C_associated_SNPs_110208 0 0 0 0 1 CLCN4 chrX:10180507 3'AG 10180507 Downstream 4bp
chr11 6292339 6292339 1 + C A STAD 6292338 + 6292318 6292358 41 CTTCCACGTTCCCGGCCTGCCCTGGAGCTGACGGCGCTGAC CTTCCACGTTCCCGGCCTGCCATGGAGCTGACGGCGCTGAC < 41bp 0.54287339965303 0.786299860582898 0.23102912 0.42884368 prediction 0.486852921859735 Functional Gain - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6292338 chr11:6292339 nonsynonymous SNV 0.015 0 22 hm5C_associated_SNPs_110209 0 0 0 0 1 CCKBR chr11:6292241 3'AG 6292241 Downstream 99bp
chr2 121742232 121742232 1 + C A rs61732850 121742228 + 121742208 121742248 41 CAGTGAGGCCGGCACGGAGCCTGGCGGCCCAGAGAGCACCG CAGTGAGGCCGGCACGGAGCCTGGAGGCCCAGAGAGCACCG < 41bp 0.680718484685025 0.9241422841526 0.622417 0.5902396 prediction 0.486847598935148 Functional Gain - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121742228 chr2:121742232 synonymous SNV . 0 25 hm5C_associated_SNPs_110211 2 0 0 0 1 GLI2 chr2:121742319 5'GT 121742319 Upstream 88bp
chr2 177016766 177016766 1 + C A ACC 177016765 + 177016745 177016785 41 GCAGCCGGCCGTGGTCTACCCCTGGATGAAGAAGGTGCACG GCAGCCGGCCGTGGTCTACCCATGGATGAAGAAGGTGCACG < 41bp 0.492888946136931 0.743414923721093 0.27713075 0.5814607 prediction 0.486829847442187 Functional Gain - HOXD4 ENSG00000170166 CDS Human protein_coding chr2:177016765 chr2:177016766 synonymous SNV . 0 22 hm5C_associated_SNPs_110212 0 0 1 0 1 HOXD4 chr2:177016794 5'GT 177016794 Upstream 29bp
chr2 120395917 120395917 1 + C T SKCM 120395916 + 120395896 120395936 41 ATTACCATCTATGCTCTCACCCCAAGTACAAATTCACCAAA ATTACCATCTATGCTCTCACCTCAAGTACAAATTCACCAAA < 41bp 0.555259777535102 0.798672371417896 0.714808 0.508377 prediction 0.486825187765588 Functional Gain - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120395916 chr2:120395917 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_110213 0 0 0 0 2 CFAP221 chr2:120395835 3'AG 120395835 Downstream 83bp
chr2 120395917 120395917 1 + C T SKCM 120395916 + 120395896 120395936 41 ATTACCATCTATGCTCTCACCCCAAGTACAAATTCACCAAA ATTACCATCTATGCTCTCACCTCAAGTACAAATTCACCAAA < 41bp 0.555259777535102 0.798672371417896 0.714808 0.508377 prediction 0.486825187765588 Functional Gain - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120395916 chr2:120395917 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_110213 0 0 0 0 2 CFAP221 chr2:120395993 5'GT 120395993 Upstream 77bp
chr2 10925104 10925104 1 - G A SKCM 10925105 - 10925085 10925125 41 CCTGTAGGAGGCGGGGCTTTCCCTACCATCGTTGAGAGAGA CCTGTAGGAGGCGGGGCTTTCTCTACCATCGTTGAGAGAGA < 41bp 0.559893088337773 0.803296483990178 0.33173382 0.91004837 prediction 0.48680679130481 Functional Gain - PDIA6 ENSG00000143870 CDS Human protein_coding chr2:10925105 chr2:10925104 nonsynonymous SNV 0.144 2 22 hm5C_associated_SNPs_110215 0 0 1 0 2 PDIA6 chr2:10925060 5'GT 10925060 Upstream 45bp
chr2 10925104 10925104 1 - G A SKCM 10925105 - 10925085 10925125 41 CCTGTAGGAGGCGGGGCTTTCCCTACCATCGTTGAGAGAGA CCTGTAGGAGGCGGGGCTTTCTCTACCATCGTTGAGAGAGA < 41bp 0.559893088337773 0.803296483990178 0.33173382 0.91004837 prediction 0.48680679130481 Functional Gain - PDIA6 ENSG00000143870 CDS Human protein_coding chr2:10925105 chr2:10925104 nonsynonymous SNV 0.144 2 22 hm5C_associated_SNPs_110215 0 0 1 0 2 PDIA6 chr2:10925156 3'AG 10925156 Downstream 53bp
chrX 65412069 65412069 1 + T C STAD 65412067 + 65412047 65412087 41 GACAGTACTTCATTGAGGCCCATGAGATTCAATGGGACTAT GACAGTACTTCATTGAGGCCCACGAGATTCAATGGGACTAT < 41bp 0.468198593720737 0.743396490553206 0.2420372 0.19400606 prediction 0.486792981106411 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65412067 chrX:65412069 synonymous SNV . 0 23 hm5C_associated_SNPs_110217 0 0 1 0 2 HEPH chrX:65411972 3'AG 65411972 Downstream 98bp
chrX 65412069 65412069 1 + T C STAD 65412067 + 65412047 65412087 41 GACAGTACTTCATTGAGGCCCATGAGATTCAATGGGACTAT GACAGTACTTCATTGAGGCCCACGAGATTCAATGGGACTAT < 41bp 0.468198593720737 0.743396490553206 0.2420372 0.19400606 prediction 0.486792981106411 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65412067 chrX:65412069 synonymous SNV . 0 23 hm5C_associated_SNPs_110217 0 0 1 0 2 HEPH chrX:65412140 5'GT 65412140 Upstream 72bp
chr3 160951194 160951194 1 + T A LUAD 160951190 + 160951170 160951210 41 TTTGTGTTTTATTGAAGGTACGGCTTGTAGATGCAGGCTTT TTTGTGTTTTATTGAAGGTACGGCATGTAGATGCAGGCTTT < 41bp 0.421380058982351 0.743384931900813 0.035586685 0.08710581 prediction 0.486769863801627 Functional Gain - NMD3 ENSG00000169251 CDS Human protein_coding chr3:160951190 chr3:160951194 nonsynonymous SNV 0.981 4 25 hm5C_associated_SNPs_110219 0 0 1 0 2 NMD3 chr3:160951187 3'AG 160951187 Downstream 8bp
chr3 160951194 160951194 1 + T A LUAD 160951190 + 160951170 160951210 41 TTTGTGTTTTATTGAAGGTACGGCTTGTAGATGCAGGCTTT TTTGTGTTTTATTGAAGGTACGGCATGTAGATGCAGGCTTT < 41bp 0.421380058982351 0.743384931900813 0.035586685 0.08710581 prediction 0.486769863801627 Functional Gain - NMD3 ENSG00000169251 CDS Human protein_coding chr3:160951190 chr3:160951194 nonsynonymous SNV 0.981 4 25 hm5C_associated_SNPs_110219 0 0 1 0 2 NMD3 chr3:160951267 5'GT 160951267 Upstream 74bp
chr4 74316375 74316375 1 + T C UCEC 74316373 + 74316353 74316393 41 GAAAGCCCCCCAGCTGACCTCGTCGGAGCTGATGGCCATCA GAAAGCCCCCCAGCTGACCTCGCCGGAGCTGATGGCCATCA < 41bp 0.57751580814838 0.820897281113298 0.43909734 0.5505839 prediction 0.486762945929837 Functional Gain - AFP ENSG00000081051 CDS Human protein_coding chr4:74316373 chr4:74316375 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_110220 0 0 1 0 2 AFP chr4:74316332 3'AG 74316332 Downstream 44bp
chr4 74316375 74316375 1 + T C UCEC 74316373 + 74316353 74316393 41 GAAAGCCCCCCAGCTGACCTCGTCGGAGCTGATGGCCATCA GAAAGCCCCCCAGCTGACCTCGCCGGAGCTGATGGCCATCA < 41bp 0.57751580814838 0.820897281113298 0.43909734 0.5505839 prediction 0.486762945929837 Functional Gain - AFP ENSG00000081051 CDS Human protein_coding chr4:74316373 chr4:74316375 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_110220 0 0 1 0 2 AFP chr4:74316470 5'GT 74316470 Upstream 96bp
chr20 32211096 32211096 1 + C A OV 32211095 + 32211075 32211115 41 GAAATGGGAAGAGGCCCAGTCCAGAGAGGTGAGCAGATGAG GAAATGGGAAGAGGCCCAGTCAAGAGAGGTGAGCAGATGAG < 41bp 0.523316239720651 0.766691176878691 0.28964335 0.40646988 prediction 0.48674987431608 Functional Gain - CBFA2T2 ENSG00000078699 CDS Human protein_coding chr20:32211095 chr20:32211096 nonsynonymous SNV 0.840 4 22 hm5C_associated_SNPs_110222 0 0 1 0 1 CBFA2T2 chr20:32211102 5'GT 32211102 Upstream 7bp
chr12 113327849 113327849 1 + C A rs138056234 113327848 + 113327828 113327868 41 GATGAAACGTGCTGGGACCACCGGGTCAGCCCGAGGCATGG GATGAAACGTGCTGGGACCACAGGGTCAGCCCGAGGCATGG < 41bp 0.54559715619451 0.788959143297661 0.62267923 0.76428354 prediction 0.486723974206302 Functional Gain - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113327848 chr12:113327849 synonymous SNV . 0 22 hm5C_associated_SNPs_110224 0 0 0 0 2 RPH3A chr12:113327829 3'AG 113327829 Downstream 21bp
chr12 113327849 113327849 1 + C A rs138056234 113327848 + 113327828 113327868 41 GATGAAACGTGCTGGGACCACCGGGTCAGCCCGAGGCATGG GATGAAACGTGCTGGGACCACAGGGTCAGCCCGAGGCATGG < 41bp 0.54559715619451 0.788959143297661 0.62267923 0.76428354 prediction 0.486723974206302 Functional Gain - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113327848 chr12:113327849 synonymous SNV . 0 22 hm5C_associated_SNPs_110224 0 0 0 0 2 RPH3A chr12:113327885 5'GT 113327885 Upstream 37bp
chr1 180897639 180897639 1 + C A THCA 180897638 + 180897618 180897658 41 ACGCATCTGCTGCAGCGTGCCCGCATGAAGGCCAGGACCCG ACGCATCTGCTGCAGCGTGCCAGCATGAAGGCCAGGACCCG < 41bp 0.486935729054559 0.743341242351467 0.073286235 0.21913493 prediction 0.486682484702935 Functional Gain - KIAA1614 ENSG00000135835 CDS Human protein_coding chr1:180897638 chr1:180897639 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_110229 0 0 0 0 1 KIAA1614 chr1:180897709 5'GT 180897709 Upstream 71bp
chr15 68379020 68379020 1 + C T COAD 68379019 + 68378999 68379039 41 CAGCTCTTCACCCAGTCCATCCGGATATAAAACTTCAAAAA CAGCTCTTCACCCAGTCCATCTGGATATAAAACTTCAAAAA < 41bp 0.506779429535264 0.750111702820984 0.18175036 0.11949116 prediction 0.486664546571442 Functional Gain - PIAS1 ENSG00000033800 CDS Human protein_coding chr15:68379019 chr15:68379020 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_110230 0 0 1 0 1 PIAS1 chr15:68379088 5'GT 68379088 Upstream 69bp
chr19 16145731 16145731 1 + C A rs73513755 16145727 + 16145707 16145747 41 ATGGTGAATTTCAGCCAGAGCGCCCAAAGAACTCGTGTCCC ATGGTGAATTTCAGCCAGAGCGCCAAAAGAACTCGTGTCCC < 41bp 0.350334266507894 0.743327568439856 0.03864637 0.1000939 prediction 0.486655136879712 Functional Gain - LINC00905 ENSG00000167459;ENSG00000267609 ncRNA_exonic Human other chr19:16145727 chr19:16145731 . . 0 25 hm5C_associated_SNPs_110231 0 0 0 0 1 LINC00905 chr19:16145822 5'GT 16145822 Upstream 92bp
chr7 6617247 6617247 1 + C G rs11559147 6617243 + 6617223 6617263 41 CCGCCGTCCCACCCCCACCTCGCCCGAGTCCGGGGCGGCCC CCGCCGTCCCACCCCCACCTCGCCGGAGTCCGGGGCGGCCC < 41bp 0.539305387231651 0.782632713014991 0.076556295 0.362259 prediction 0.486654651566681 Functional Gain - ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617243 chr7:6617247 . . 0 25 hm5C_associated_SNPs_110232 0 0 1 0 1 ZDHHC4 chr7:6617221 3'AG 6617221 Downstream 27bp
chr19 16976300 16976300 1 + C T STAD 16976299 + 16976279 16976319 41 AGAAGCTATCTCGGATGGCGCCGGAAGACCAGGAGAAGTTC AGAAGCTATCTCGGATGGCGCTGGAAGACCAGGAGAAGTTC < 41bp 0.531700697765552 0.775024770512517 0.8271573 0.53288466 prediction 0.48664814549393 Functional Gain - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16976299 chr19:16976300 nonsynonymous SNV 0.647 1 22 hm5C_associated_SNPs_110233 0 0 1 0 1 SIN3B chr19:16976221 3'AG 16976221 Downstream 80bp
chr3 113344979 113344979 1 + C T COAD 113344978 + 113344958 113344998 41 GCCGAATCCCGGGAGAAGAACCGCGAGTGCATTCTGCTGGA GCCGAATCCCGGGAGAAGAACTGCGAGTGCATTCTGCTGGA < 41bp 0.53091174369514 0.77422429218803 0.63381404 0.8852098 prediction 0.48662509698578 Functional Gain - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113344978 chr3:113344979 nonsynonymous SNV 0.899 3 22 hm5C_associated_SNPs_110234 0 0 0 0 2 SIDT1 chr3:113344949 3'AG 113344949 Downstream 31bp
chr3 113344979 113344979 1 + C T COAD 113344978 + 113344958 113344998 41 GCCGAATCCCGGGAGAAGAACCGCGAGTGCATTCTGCTGGA GCCGAATCCCGGGAGAAGAACTGCGAGTGCATTCTGCTGGA < 41bp 0.53091174369514 0.77422429218803 0.63381404 0.8852098 prediction 0.48662509698578 Functional Gain - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113344978 chr3:113344979 nonsynonymous SNV 0.899 3 22 hm5C_associated_SNPs_110234 0 0 0 0 2 SIDT1 chr3:113345062 5'GT 113345062 Upstream 84bp
chr16 2577964 2577964 1 + C A UCEC 2577960 + 2577940 2577980 41 CGAAGTGATCCGGGCGCTGACGGCCCGTGGCATCTGCGTGT CGAAGTGATCCGGGCGCTGACGGCACGTGGCATCTGCGTGT < 41bp 0.683538728260431 0.926836122222697 0.7541293 0.88350797 prediction 0.48659478792453 Functional Gain - AMDHD2 ENSG00000162066 CDS Human protein_coding chr16:2577960 chr16:2577964 synonymous SNV . 0 25 hm5C_associated_SNPs_110236 0 0 1 0 1 AMDHD2 chr16:2577986 5'GT 2577986 Upstream 23bp
chr20 13055049 13055049 1 + C A UCEC 13055045 + 13055025 13055065 41 ATCAACATGGGCTCCTATAACTTCCTTGGTCTTGCAGCCAA ATCAACATGGGCTCCTATAACTTCATTGGTCTTGCAGCCAA < 41bp 0.310595423085051 0.743296487020786 0.18929851 0.34055126 prediction 0.486592974041572 Functional Gain - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13055045 chr20:13055049 nonsynonymous SNV 0.892 5 25 hm5C_associated_SNPs_110237 0 0 1 0 2 SPTLC3 chr20:13054997 3'AG 13054997 Downstream 53bp
chr20 13055049 13055049 1 + C A UCEC 13055045 + 13055025 13055065 41 ATCAACATGGGCTCCTATAACTTCCTTGGTCTTGCAGCCAA ATCAACATGGGCTCCTATAACTTCATTGGTCTTGCAGCCAA < 41bp 0.310595423085051 0.743296487020786 0.18929851 0.34055126 prediction 0.486592974041572 Functional Gain - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13055045 chr20:13055049 nonsynonymous SNV 0.892 5 25 hm5C_associated_SNPs_110237 0 0 1 0 2 SPTLC3 chr20:13055145 5'GT 13055145 Upstream 97bp
chr17 78079597 78079597 1 + A G rs1042393 78079594 + 78079574 78079614 41 CGAGGTGCCCTTGGAGACCCCGCATGTCCACAGCCGGGCAC CGAGGTGCCCTTGGAGACCCCGCGTGTCCACAGCCGGGCAC < 41bp 0.521478864909387 0.764770006676771 0.050026804 0.1933825 prediction 0.486582283534768 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78079594 chr17:78079597 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_110240 2 0 1 0 2 GAA chr17:78079548 3'AG 78079548 Downstream 50bp
chr17 78079597 78079597 1 + A G rs1042393 78079594 + 78079574 78079614 41 CGAGGTGCCCTTGGAGACCCCGCATGTCCACAGCCGGGCAC CGAGGTGCCCTTGGAGACCCCGCGTGTCCACAGCCGGGCAC < 41bp 0.521478864909387 0.764770006676771 0.050026804 0.1933825 prediction 0.486582283534768 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78079594 chr17:78079597 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_110240 2 0 1 0 2 GAA chr17:78079693 5'GT 78079693 Upstream 97bp
chr16 10855263 10855263 1 + C T GBM 10855262 + 10855242 10855282 41 CGGAAAGAAATCAACTTCTGCCGCAAGGTGAAGCTGCCCAT CGGAAAGAAATCAACTTCTGCTGCAAGGTGAAGCTGCCCAT < 41bp 0.547168651998838 0.790443243884923 0.48260346 0.4289102 prediction 0.486549183772172 Functional Gain - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10855262 chr16:10855263 nonsynonymous SNV 0.975 2 22 hm5C_associated_SNPs_110242 0 0 1 0 2 NUBP1 chr16:10855221 3'AG 10855221 Downstream 43bp
chr16 10855263 10855263 1 + C T GBM 10855262 + 10855242 10855282 41 CGGAAAGAAATCAACTTCTGCCGCAAGGTGAAGCTGCCCAT CGGAAAGAAATCAACTTCTGCTGCAAGGTGAAGCTGCCCAT < 41bp 0.547168651998838 0.790443243884923 0.48260346 0.4289102 prediction 0.486549183772172 Functional Gain - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10855262 chr16:10855263 nonsynonymous SNV 0.975 2 22 hm5C_associated_SNPs_110242 0 0 1 0 2 NUBP1 chr16:10855331 5'GT 10855331 Upstream 69bp
chr13 41379349 41379349 1 + T C LGG 41379347 + 41379327 41379367 41 GTGAAGTGCCGGCTGCAGACCATGTATGAGATGGAGACATC GTGAAGTGCCGGCTGCAGACCACGTATGAGATGGAGACATC < 41bp 0.464502048490961 0.74326467958087 0.2825756 0.20961419 prediction 0.48652935916174 Functional Gain - SLC25A15 ENSG00000102743 CDS Human protein_coding chr13:41379347 chr13:41379349 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_110243 0 0 0 0 2 SLC25A15 chr13:41379254 3'AG 41379254 Downstream 96bp
chr13 41379349 41379349 1 + T C LGG 41379347 + 41379327 41379367 41 GTGAAGTGCCGGCTGCAGACCATGTATGAGATGGAGACATC GTGAAGTGCCGGCTGCAGACCACGTATGAGATGGAGACATC < 41bp 0.464502048490961 0.74326467958087 0.2825756 0.20961419 prediction 0.48652935916174 Functional Gain - SLC25A15 ENSG00000102743 CDS Human protein_coding chr13:41379347 chr13:41379349 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_110243 0 0 0 0 2 SLC25A15 chr13:41379391 5'GT 41379391 Upstream 43bp
chr17 7950034 7950034 1 + C A rs61730345 7950033 + 7950013 7950053 41 CTGCACATCAACACACTCGCCCGGGAGCTGCTTATCGTGCC CTGCACATCAACACACTCGCCAGGGAGCTGCTTATCGTGCC < 41bp 0.549366161405598 0.792630039837198 0.1782799 0.5517968 prediction 0.4865277568632 Functional Gain - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7950033 chr17:7950034 synonymous SNV . 0 22 hm5C_associated_SNPs_110244 0 0 0 0 1 ALOX15B chr17:7949986 3'AG 7949986 Downstream 49bp
chr5 78379182 78379182 1 + C A LUSC 78379181 + 78379161 78379201 41 AAAGAGGGGTTTGTGGATCTCCCAGAATATCCCTTTGGTAA AAAGAGGGGTTTGTGGATCTCACAGAATATCCCTTTGGTAA < 41bp 0.545426374179129 0.788672265509087 0.36842984 0.3575024 prediction 0.486491782659917 Functional Gain - BHMT2 ENSG00000132840 CDS Human protein_coding chr5:78379181 chr5:78379182 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_110247 0 0 0 0 1 BHMT2 chr5:78379197 5'GT 78379197 Upstream 16bp
chr20 19955331 19955331 1 + C A rs371812021 19955330 + 19955310 19955350 41 CCCCAGCTGACAGCAAACCCCCGAACCTTCCACCTCCCCAT CCCCAGCTGACAGCAAACCCCAGAACCTTCCACCTCCCCAT < 41bp 0.479778692365443 0.743237791248154 0.15308917 0.2702029 prediction 0.486475582496308 Functional Gain - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19955330 chr20:19955331 nonsynonymous SNV 0.937 1 22 hm5C_associated_SNPs_110250 0 0 1 0 1 RIN2 chr20:19955298 3'AG 19955298 Downstream 34bp
chr20 43559364 43559364 1 + C G LGG 43559363 + 43559343 43559383 41 CTACTTCCTGCCTGCCATGCCCCAGGTGACGGCCTGCCCGC CTACTTCCTGCCTGCCATGCCGCAGGTGACGGCCTGCCCGC < 41bp 0.622023546696994 0.865261212646443 0.040914953 0.12440166 prediction 0.486475331898897 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43559363 chr20:43559364 synonymous SNV . 0 22 hm5C_associated_SNPs_110251 0 0 1 0 1 PABPC1L chr20:43559367 5'GT 43559367 Upstream 4bp
chr3 9787362 9787362 1 + C T SKCM 9787361 + 9787341 9787381 41 CACTGAGAATGAGGCCTACTCCGTGGGCACTGGCCGCGGCG CACTGAGAATGAGGCCTACTCTGTGGGCACTGGCCGCGGCG < 41bp 0.498611008010898 0.743230141575696 0.8397954 0.7211276 prediction 0.486460283151392 Functional Gain - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9787361 chr3:9787362 synonymous SNV . 0 22 hm5C_associated_SNPs_110255 0 0 1 0 1 BRPF1 chr3:9787393 5'GT 9787393 Upstream 32bp
chr14 105927123 105927123 1 + C T SKCM 105927122 + 105927102 105927142 41 TTCCACGCCATGGATACTCTCCACAAGAACATCTACGACAT TTCCACGCCATGGATACTCTCTACAAGAACATCTACGACAT < 41bp 0.562483503580617 0.805712149689879 0.049101025 0.6969 prediction 0.486457292218525 Functional Gain - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105927122 chr14:105927123 nonsynonymous SNV 0.061 1 22 hm5C_associated_SNPs_110256 0 0 1 1 1 MTA1 chr14:105927102 3'AG 105927102 Downstream 22bp
chr12 56626573 56626573 1 + C A rs76909887 56626572 + 56626552 56626592 41 TCAAAGGCCCCTCACCTACCCCGTGGGCCAGCCCCCTCGGG TCAAAGGCCCCTCACCTACCCAGTGGGCCAGCCCCCTCGGG < 41bp 0.47499981338696 0.74321829554894 0.38396502 0.8772618 prediction 0.486436591097879 Functional Gain - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56626572 chr12:56626573 nonsynonymous SNV 0.593 0 22 hm5C_associated_SNPs_110257 0 0 1 0 1 SLC39A5 chr12:56626656 5'GT 56626656 Upstream 84bp
chr4 79472945 79472945 1 + C G rs143738600 79472941 + 79472921 79472961 41 GCCAGCGCGGAGCACCTGCGCCCGCGGCTGACACCTTCGCT GCCAGCGCGGAGCACCTGCGCCCGGGGCTGACACCTTCGCT < 41bp 0.502257972106719 0.7454752447453 0.37929714 0.3940174 prediction 0.486434545277162 Functional Gain - ANXA3 ENSG00000138772 UTR5 Human protein_coding chr4:79472941 chr4:79472945 . . 0 25 hm5C_associated_SNPs_110258 0 0 1 0 1 ANXA3 chr4:79473013 5'GT 79473013 Upstream 69bp
chr8 126017790 126017790 1 + C G SKCM 126017789 + 126017769 126017809 41 ACAGTGGAAGGTCTTGATGCCCAGGTTGTAAATGGTTACAT ACAGTGGAAGGTCTTGATGCCGAGGTTGTAAATGGTTACAT < 41bp 0.425781349162332 0.743216882794125 0.029209554 0.29146144 prediction 0.486433765588251 Functional Gain - SQLE ENSG00000104549 CDS Human protein_coding chr8:126017789 chr8:126017790 nonsynonymous SNV 0.853 1 22 hm5C_associated_SNPs_110259 0 0 1 0 1 SQLE chr8:126017767 3'AG 126017767 Downstream 24bp
chr9 133914603 133914603 1 + C A KIRC 133914602 + 133914582 133914622 41 GAAGTGTGACCGCTGTCTGCCCGGGTTCCACTCGCTCAGTG GAAGTGTGACCGCTGTCTGCCAGGGTTCCACTCGCTCAGTG < 41bp 0.543690813305384 0.786899062390911 0.32771587 0.8783742 prediction 0.486416498171055 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133914602 chr9:133914603 synonymous SNV . 0 22 hm5C_associated_SNPs_110262 0 0 0 0 2 LAMC3 chr9:133914518 3'AG 133914518 Downstream 86bp
chr9 133914603 133914603 1 + C A KIRC 133914602 + 133914582 133914622 41 GAAGTGTGACCGCTGTCTGCCCGGGTTCCACTCGCTCAGTG GAAGTGTGACCGCTGTCTGCCAGGGTTCCACTCGCTCAGTG < 41bp 0.543690813305384 0.786899062390911 0.32771587 0.8783742 prediction 0.486416498171055 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133914602 chr9:133914603 synonymous SNV . 0 22 hm5C_associated_SNPs_110262 0 0 0 0 2 LAMC3 chr9:133914635 5'GT 133914635 Upstream 33bp
chr1 222923301 222923301 1 + C A COAD 222923300 + 222923280 222923320 41 TGAAAGGAGAGGATCAAAGGCCCAGGCAGCTGAGGTTCCTA TGAAAGGAGAGGATCAAAGGCACAGGCAGCTGAGGTTCCTA < 41bp 0.489212515157894 0.743207507197238 0.04110816 0.09836924 prediction 0.486415014394477 Functional Gain - FAM177B ENSG00000197520 CDS Human protein_coding chr1:222923300 chr1:222923301 synonymous SNV . 0 22 hm5C_associated_SNPs_110263 0 0 0 1 1 FAM177B chr1:222923263 3'AG 222923263 Downstream 39bp
chr11 10508883 10508883 1 + C T SKCM 10508882 + 10508862 10508902 41 TCAAAGAGTTGAAGAGTAACCCCCACCGGGACTTCTATAAC TCAAAGAGTTGAAGAGTAACCTCCACCGGGACTTCTATAAC < 41bp 0.468465128211016 0.743200572122816 0.0503729 0.9140746 prediction 0.486401144245631 Functional Gain - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10508882 chr11:10508883 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_110264 0 0 1 0 1 AMPD3 chr11:10508911 5'GT 10508911 Upstream 29bp
chr19 1254389 1254389 1 + C G rs373111260 1254388 + 1254368 1254408 41 CCAGTGCCGCCCGAGTCCCCCCGGTGCCCACCAGCCCGTCC CCAGTGCCGCCCGAGTCCCCCGGGTGCCCACCAGCCCGTCC < 41bp 0.622646092399863 0.865846465260517 0.48646328 0.9240083 prediction 0.486400745721308 Functional Gain - MIDN ENSG00000167470 CDS Human protein_coding chr19:1254388 chr19:1254389 nonsynonymous SNV 0.004 1 22 hm5C_associated_SNPs_110265 0 0 1 0 1 MIDN chr19:1254477 5'GT 1254477 Upstream 89bp
chr1 44442875 44442875 1 + T C COAD 44442873 + 44442853 44442893 41 ATTGGCCTCTTTGGGGTCATCGTCGCAATTCTTCAGGTGAT ATTGGCCTCTTTGGGGTCATCGCCGCAATTCTTCAGGTGAT < 41bp 0.544907641486324 0.788102806177306 0.5289339 0.66873735 prediction 0.486390329381964 Functional Gain - ATP6V0B ENSG00000117410 CDS Human protein_coding chr1:44442873 chr1:44442875 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_110266 0 0 1 0 1 ATP6V0B chr1:44442888 5'GT 44442888 Upstream 14bp
chr2 152220570 152220570 1 + C A LUAD 152220566 + 152220546 152220586 41 GGCGGCCATCTCGCAACTTACAAGCAGCTAGAGGCAGCCAG GGCGGCCATCTCGCAACTTACAAGAAGCTAGAGGCAGCCAG < 41bp 0.678809349680669 0.921988190233688 0.38833645 0.6353724 prediction 0.486357681106039 Functional Gain - TNFAIP6 ENSG00000123610 CDS Human protein_coding chr2:152220566 chr2:152220570 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_110269 0 0 0 0 1 TNFAIP6 chr2:152220594 5'GT 152220594 Upstream 25bp
chr16 31496205 31496205 1 + C A UCEC 31496201 + 31496181 31496221 41 CTTTGTGGGCCTGGCAGGGACTGGCGCTGCAAGTGGCTTGG CTTTGTGGGCCTGGCAGGGACTGGAGCTGCAAGTGGCTTGG < 41bp 0.687456728761738 0.930630520051926 0.82526577 0.8954744 prediction 0.486347582580377 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31496201 chr16:31496205 synonymous SNV . 0 25 hm5C_associated_SNPs_110270 0 0 0 0 2 SLC5A2 chr16:31496140 3'AG 31496140 Downstream 66bp
chr16 31496205 31496205 1 + C A UCEC 31496201 + 31496181 31496221 41 CTTTGTGGGCCTGGCAGGGACTGGCGCTGCAAGTGGCTTGG CTTTGTGGGCCTGGCAGGGACTGGAGCTGCAAGTGGCTTGG < 41bp 0.687456728761738 0.930630520051926 0.82526577 0.8954744 prediction 0.486347582580377 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31496201 chr16:31496205 synonymous SNV . 0 25 hm5C_associated_SNPs_110270 0 0 0 0 2 SLC5A2 chr16:31496244 5'GT 31496244 Upstream 40bp
chr19 36133394 36133394 1 + C A LUSC 36133393 + 36133373 36133413 41 GGAACTGGGATGAGGCATCCCCACAGGAAGTGCCTCCAGGG GGAACTGGGATGAGGCATCCCAACAGGAAGTGCCTCCAGGG < 41bp 0.526901047785988 0.770073088213413 0.047857046 0.17785645 prediction 0.48634408085485 Functional Gain - ETV2 ENSG00000105672 CDS Human protein_coding chr19:36133393 chr19:36133394 nonsynonymous SNV 0.779 2 22 hm5C_associated_SNPs_110271 0 0 1 0 2 ETV2 chr19:36133336 3'AG 36133336 Downstream 59bp
chr19 36133394 36133394 1 + C A LUSC 36133393 + 36133373 36133413 41 GGAACTGGGATGAGGCATCCCCACAGGAAGTGCCTCCAGGG GGAACTGGGATGAGGCATCCCAACAGGAAGTGCCTCCAGGG < 41bp 0.526901047785988 0.770073088213413 0.047857046 0.17785645 prediction 0.48634408085485 Functional Gain - ETV2 ENSG00000105672 CDS Human protein_coding chr19:36133393 chr19:36133394 nonsynonymous SNV 0.779 2 22 hm5C_associated_SNPs_110271 0 0 1 0 2 ETV2 chr19:36133432 5'GT 36133432 Upstream 39bp
chr19 55087503 55087503 1 + A G LUSC 55087500 + 55087480 55087520 41 TCAGCCCACGTGGGGACCTACAGATGCTACAGCTCACTCAG TCAGCCCACGTGGGGACCTACAGGTGCTACAGCTCACTCAG < 41bp 0.512255825317316 0.755405350886231 0.81458795 0.89364916 prediction 0.486299051137829 Functional Gain - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55087500 chr19:55087503 synonymous SNV . 0 24 hm5C_associated_SNPs_110273 0 0 0 0 1 LILRA2 chr19:55087576 5'GT 55087576 Upstream 74bp
chr11 396831 396831 1 + C A LUAD 396830 + 396810 396850 41 ACAGGGCTTCCGGCCCATCGCCAAGCCGGCCTACAGCCCAG ACAGGGCTTCCGGCCCATCGCAAAGCCGGCCTACAGCCCAG < 41bp 0.524385637443445 0.767523412875445 0.9232346 0.87398213 prediction 0.486275550864 Functional Gain - PKP3 ENSG00000184363 CDS Human protein_coding chr11:396830 chr11:396831 synonymous SNV . 0 22 hm5C_associated_SNPs_110275 0 0 1 0 1 PKP3 chr11:396814 3'AG 396814 Downstream 18bp
chr6 33382304 33382304 1 + T G LGG 33382302 + 33382282 33382322 41 CTTCCAGGCTCCTCTCTGCTCTTAACAGCCACAAGGACCGG CTTCCAGGCTCCTCTCTGCTCTGAACAGCCACAAGGACCGG < 41bp 0.395838323272196 0.743135779641297 0.0286327 0.040285766 prediction 0.486271559282595 Functional Gain - PHF1 ENSG00000112511 CDS Human protein_coding chr6:33382302 chr6:33382304 synonymous SNV . 0 23 hm5C_associated_SNPs_110277 0 0 0 0 2 PHF1 chr6:33382254 3'AG 33382254 Downstream 51bp
chr6 33382304 33382304 1 + T G LGG 33382302 + 33382282 33382322 41 CTTCCAGGCTCCTCTCTGCTCTTAACAGCCACAAGGACCGG CTTCCAGGCTCCTCTCTGCTCTGAACAGCCACAAGGACCGG < 41bp 0.395838323272196 0.743135779641297 0.0286327 0.040285766 prediction 0.486271559282595 Functional Gain - PHF1 ENSG00000112511 CDS Human protein_coding chr6:33382302 chr6:33382304 synonymous SNV . 0 23 hm5C_associated_SNPs_110277 0 0 0 0 2 PHF1 chr6:33382321 5'GT 33382321 Upstream 18bp
chr14 78397898 78397898 1 + C A MESO 78397897 + 78397877 78397917 41 ACAACGCGGCCAACTACCTCCCCCAGATCAGCCATCTCCTC ACAACGCGGCCAACTACCTCCACCAGATCAGCCATCTCCTC < 41bp 0.538903817104426 0.782022758420799 0.047925472 0.13240364 prediction 0.486237882632746 Functional Gain - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78397897 chr14:78397898 nonsynonymous SNV 0.982 4 22 hm5C_associated_SNPs_110279 0 0 0 0 1 ADCK1 chr14:78397861 3'AG 78397861 Downstream 38bp
chr8 1581066 1581066 1 + C A UCEC 1581062 + 1581042 1581082 41 TCTTCAGTGAAGTTGAATCTCAGGCCATGGATGCCCTCGAC TCTTCAGTGAAGTTGAATCTCAGGACATGGATGCCCTCGAC < 41bp 0.681316549485276 0.92441925655588 0.9015815 0.9093173 prediction 0.486205414141207 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1581062 chr8:1581066 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_110283 0 0 0 0 1 DLGAP2 chr8:1580993 3'AG 1580993 Downstream 74bp
chr12 109278897 109278897 1 + T G COAD 109278894 + 109278874 109278914 41 ACATAAAGGTCTACGCGGACCGCTTCACCCCACTCACCACC ACATAAAGGTCTACGCGGACCGCGTCACCCCACTCACCACC < 41bp 0.339124035059107 0.743102045738883 0.053020924 0.12176442 prediction 0.486204091477766 Functional Gain - DAO ENSG00000110887 CDS Human protein_coding chr12:109278894 chr12:109278897 nonsynonymous SNV 0.662 4 24 hm5C_associated_SNPs_110284 0 0 0 0 1 DAO chr12:109278976 5'GT 109278976 Upstream 80bp
chr2 174230244 174230244 1 + C A UCEC 174230240 + 174230220 174230260 41 TGACCCTTCCGCATATAATTCGCCCAGTGGAAGAAATTACA TGACCCTTCCGCATATAATTCGCCAAGTGGAAGAAATTACA < 41bp 0.304026663579451 0.743087257734108 0.13994545 0.44807675 prediction 0.486174515468216 Functional Gain - CDCA7 ENSG00000144354 CDS Human protein_coding chr2:174230240 chr2:174230244 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_110287 0 0 1 0 2 CDCA7 chr2:174230180 3'AG 174230180 Downstream 65bp
chr2 174230244 174230244 1 + C A UCEC 174230240 + 174230220 174230260 41 TGACCCTTCCGCATATAATTCGCCCAGTGGAAGAAATTACA TGACCCTTCCGCATATAATTCGCCAAGTGGAAGAAATTACA < 41bp 0.304026663579451 0.743087257734108 0.13994545 0.44807675 prediction 0.486174515468216 Functional Gain - CDCA7 ENSG00000144354 CDS Human protein_coding chr2:174230240 chr2:174230244 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_110287 0 0 1 0 2 CDCA7 chr2:174230320 5'GT 174230320 Upstream 77bp
chr12 53499388 53499388 1 + C T rs202063662 53499387 + 53499367 53499407 41 AAACAGAAAGTTTTCATCATCCGCAAGTCCCTGCTTGAGTA AAACAGAAAGTTTTCATCATCTGCAAGTCCCTGCTTGAGTA < 41bp 0.491323993720387 0.743073157362694 0.07019803 0.10037857 prediction 0.486146314725388 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53499387 chr12:53499388 nonsynonymous SNV 0.982 2 22 hm5C_associated_SNPs_110290 0 0 0 0 2 SOAT2 chr12:53499345 3'AG 53499345 Downstream 44bp
chr12 53499388 53499388 1 + C T rs202063662 53499387 + 53499367 53499407 41 AAACAGAAAGTTTTCATCATCCGCAAGTCCCTGCTTGAGTA AAACAGAAAGTTTTCATCATCTGCAAGTCCCTGCTTGAGTA < 41bp 0.491323993720387 0.743073157362694 0.07019803 0.10037857 prediction 0.486146314725388 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53499387 chr12:53499388 nonsynonymous SNV 0.982 2 22 hm5C_associated_SNPs_110290 0 0 0 0 2 SOAT2 chr12:53499404 5'GT 53499404 Upstream 17bp
chrX 153628249 153628249 1 + T C COAD 153628247 + 153628227 153628267 41 CACCCCTTCCACGTCATCCGCATCAACAAGATGTTGTCCTG CACCCCTTCCACGTCATCCGCACCAACAAGATGTTGTCCTG < 41bp 0.460247289994313 0.743057985671473 0.14995235 0.17342389 prediction 0.486115971342945 Functional Gain - RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628247 chrX:153628249 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_110294 0 0 1 0 1 RPL10 chrX:153628282 5'GT 153628282 Upstream 34bp
chr20 31825567 31825567 1 + C A LUSC 31825563 + 31825543 31825583 41 TCTTCTACGGGCTGTTAGCCCAGACCATGGCCCAGTTTGGA TCTTCTACGGGCTGTTAGCCCAGAACATGGCCCAGTTTGGA < 41bp 0.33696766563618 0.743047217088912 0.4378616 0.3640737 prediction 0.486094434177824 Functional Gain - BPIFA1 ENSG00000198183 CDS Human protein_coding chr20:31825563 chr20:31825567 nonsynonymous SNV 0.012 1 25 hm5C_associated_SNPs_110295 0 0 0 0 1 BPIFA1 chr20:31825503 3'AG 31825503 Downstream 65bp
chr11 118506246 118506246 1 + C G UCS 118506245 + 118506225 118506265 41 CGGAGCAAGGCTGAGCTGCTCCGCAGCATCGCCAAGAGGAA CGGAGCAAGGCTGAGCTGCTCGGCAGCATCGCCAAGAGGAA < 41bp 0.607714158113577 0.850756575781759 0.16998145 0.82823634 prediction 0.486084835336365 Functional Gain - PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118506245 chr11:118506246 nonsynonymous SNV 0.780 3 22 hm5C_associated_SNPs_110296 0 0 1 0 1 PHLDB1 chr11:118506266 5'GT 118506266 Upstream 21bp
chr7 20444413 20444413 1 + C T UCEC 20444412 + 20444392 20444432 41 GAAGGTGTGAGTGCACCGATCCCAGGAGCATCGGCCGCTTC GAAGGTGTGAGTGCACCGATCTCAGGAGCATCGGCCGCTTC < 41bp 0.478500024356798 0.743037405360317 0.20360765 0.026389688 prediction 0.486074810720635 Functional Gain - ITGB8 ENSG00000105855 CDS Human protein_coding chr7:20444412 chr7:20444413 nonsynonymous SNV 0.996 5 22 hm5C_associated_SNPs_110298 0 0 0 0 1 ITGB8 chr7:20444476 5'GT 20444476 Upstream 64bp
chr10 18250582 18250582 1 + C G LUAD 18250581 + 18250561 18250601 41 CAGCTTAGAGAAGAAGTGGTCCAGAGAGTTTCTCTTCTCCT CAGCTTAGAGAAGAAGTGGTCGAGAGAGTTTCTCTTCTCCT < 41bp 0.431133070558045 0.743025046655294 0.58452547 0.92507505 prediction 0.486050093310588 Functional Gain - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18250581 chr10:18250582 nonsynonymous SNV 0.999 0 22 hm5C_associated_SNPs_110299 0 0 0 0 1 SLC39A12 chr10:18250510 3'AG 18250510 Downstream 73bp
chr10 96066280 96066280 1 + C T SKCM 96066279 + 96066259 96066299 41 CCTCTGGACAGCTGCCATTTCCGCACAAAGCCCATCCATCG CCTCTGGACAGCTGCCATTTCTGCACAAAGCCCATCCATCG < 41bp 0.48926181111481 0.74302165824699 0.05944276 0.06690326 prediction 0.486043316493979 Functional Gain - PLCE1 ENSG00000138193 CDS Human protein_coding chr10:96066279 chr10:96066280 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_110300 0 0 1 0 1 PLCE1 chr10:96066184 3'AG 96066184 Downstream 97bp
chr5 128957926 128957926 1 + C T rs115634132 128957925 + 128957905 128957945 41 ACTGCTTGCTACAAACAAATCCGCAGAGTGTCAATTCTGTG ACTGCTTGCTACAAACAAATCTGCAGAGTGTCAATTCTGTG < 41bp 0.543050544089948 0.786058964046412 0.11433467 0.08484438 prediction 0.486016839912929 Functional Gain - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:128957925 chr5:128957926 nonsynonymous SNV 0.690 3 22 hm5C_associated_SNPs_110305 0 0 0 1 1 ADAMTS19 chr5:128957891 3'AG 128957891 Downstream 36bp
chr7 120965504 120965504 1 + T C CESC 120965502 + 120965482 120965522 41 ACTTGCCTCAGGGAGACCCTCTTCACAGGGGCTTCTCAAAA ACTTGCCTCAGGGAGACCCTCTCCACAGGGGCTTCTCAAAA < 41bp 0.480506210072139 0.743007713296426 0.13531336 0.9636139 prediction 0.486015426592851 Functional Gain - WNT16 ENSG00000002745 CDS Human protein_coding chr7:120965502 chr7:120965504 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_110306 0 0 0 0 1 WNT16 chr7:120965534 5'GT 120965534 Upstream 31bp
chr10 101567195 101567195 1 + C T CESC 101567194 + 101567174 101567214 41 AGAGACCAAGTACAAAACCTCCGGAAGAAAGAGCTCAAGAA AGAGACCAAGTACAAAACCTCTGGAAGAAAGAGCTCAAGAA < 41bp 0.48796639694374 0.743006150449542 0.88662815 0.87548864 prediction 0.486012300899084 Functional Gain - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101567194 chr10:101567195 nonsynonymous SNV 0.509 5 22 hm5C_associated_SNPs_110307 0 0 1 0 2 ABCC2 chr10:101567141 3'AG 101567141 Downstream 55bp
chr10 101567195 101567195 1 + C T CESC 101567194 + 101567174 101567214 41 AGAGACCAAGTACAAAACCTCCGGAAGAAAGAGCTCAAGAA AGAGACCAAGTACAAAACCTCTGGAAGAAAGAGCTCAAGAA < 41bp 0.48796639694374 0.743006150449542 0.88662815 0.87548864 prediction 0.486012300899084 Functional Gain - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101567194 chr10:101567195 nonsynonymous SNV 0.509 5 22 hm5C_associated_SNPs_110307 0 0 1 0 2 ABCC2 chr10:101567278 5'GT 101567278 Upstream 84bp
chr17 42267939 42267939 1 + C A LUSC 42267938 + 42267918 42267958 41 CGCCTGCTACAAGACCCAGCCCGCACACTGCGTTCTCTGAA CGCCTGCTACAAGACCCAGCCAGCACACTGCGTTCTCTGAA < 41bp 0.509044642366583 0.752049522699168 0.016364545 0.044715255 prediction 0.48600976066517 Functional Gain - TMUB2 ENSG00000168591 CDS Human protein_coding chr17:42267938 chr17:42267939 nonsynonymous SNV 0.971 0 22 hm5C_associated_SNPs_110309 0 0 1 0 1 TMUB2 chr17:42267869 3'AG 42267869 Downstream 71bp
chr4 5448436 5448436 1 + C T HNSC 5448435 + 5448415 5448455 41 AGGTGTACATGGACAGAGGCCCCGGATACTCGTACCCTGTC AGGTGTACATGGACAGAGGCCTCGGATACTCGTACCCTGTC < 41bp 0.500485940237456 0.743486367151734 0.3205402 0.2566514 prediction 0.486000853828558 Functional Gain - STK32B ENSG00000152953 CDS Human protein_coding chr4:5448435 chr4:5448436 nonsynonymous SNV 0.659 0 22 hm5C_associated_SNPs_110313 0 0 0 0 2 STK32B chr4:5448400 3'AG 5448400 Downstream 37bp
chr4 5448436 5448436 1 + C T HNSC 5448435 + 5448415 5448455 41 AGGTGTACATGGACAGAGGCCCCGGATACTCGTACCCTGTC AGGTGTACATGGACAGAGGCCTCGGATACTCGTACCCTGTC < 41bp 0.500485940237456 0.743486367151734 0.3205402 0.2566514 prediction 0.486000853828558 Functional Gain - STK32B ENSG00000152953 CDS Human protein_coding chr4:5448435 chr4:5448436 nonsynonymous SNV 0.659 0 22 hm5C_associated_SNPs_110313 0 0 0 0 2 STK32B chr4:5448503 5'GT 5448503 Upstream 68bp
chrX 70367944 70367944 1 + C T UCEC 70367943 + 70367923 70367963 41 GAACATCCACACAGCTGTGCCCGAAGTCATGCTGCCGGTCT GAACATCCACACAGCTGTGCCTGAAGTCATGCTGCCGGTCT < 41bp 0.501576555264705 0.744575562408768 0.09137955 0.050394177 prediction 0.485998014288128 Functional Gain - NLGN3 ENSG00000196338 CDS Human protein_coding chrX:70367943 chrX:70367944 synonymous SNV . 0 22 hm5C_associated_SNPs_110315 0 0 0 0 1 NLGN3 chrX:70367913 3'AG 70367913 Downstream 32bp
chr7 23749893 23749893 1 + C G rs200238015 23749892 + 23749872 23749912 41 GTGCTACGGCGGGCGGAGGGCCGAAAGTCCAGTATGTGGGT GTGCTACGGCGGGCGGAGGGCGGAAAGTCCAGTATGTGGGT < 41bp 0.599888042864592 0.842881635795262 0.4081506 0.8774428 prediction 0.485987185861342 Functional Gain - STK31 ENSG00000196335 UTR5 Human protein_coding chr7:23749892 chr7:23749893 . . 0 22 hm5C_associated_SNPs_110317 0 0 0 0 1 STK31 chr7:23749954 5'GT 23749954 Upstream 62bp
chr12 111375074 111375074 1 + C A UCEC 111375073 + 111375053 111375093 41 CCCAGCAGGGGGCGGTGCTACCTCGGCTCCGCGCAGCCACG CCCAGCAGGGGGCGGTGCTACATCGGCTCCGCGCAGCCACG < 41bp 0.527894560205703 0.770871366341214 0.11337185 0.3317308 prediction 0.485953612271021 Functional Gain - LINC01405 ENSG00000185847 ncRNA_exonic Human lincRNA chr12:111375073 chr12:111375074 . . 0 22 hm5C_associated_SNPs_110320 0 0 0 0 1 LINC01405 chr12:111374989 3'AG 111374989 Downstream 86bp
chr19 41822684 41822684 1 + C T SKCM 41822683 + 41822663 41822703 41 CGGCAGGGCACTGCCCGGCCCCGCACCCTGCGTACCCGCCT CGGCAGGGCACTGCCCGGCCCTGCACCCTGCGTACCCGCCT < 41bp 0.511108058500122 0.754084295858652 0.10679084 0.12652397 prediction 0.48595247471706 Functional Gain - CCDC97 ENSG00000142039 CDS Human protein_coding chr19:41822683 chr19:41822684 nonsynonymous SNV 0.979 3 22 hm5C_associated_SNPs_110321 0 0 1 0 1 CCDC97 chr19:41822744 5'GT 41822744 Upstream 61bp
chr17 7612526 7612526 1 + C A LUSC 7612525 + 7612505 7612545 41 ACCTCCCGGGGTGCTGAAGGCCCCCTGCCCCCTCCCAGCAT ACCTCCCGGGGTGCTGAAGGCACCCTGCCCCCTCCCAGCAT < 41bp 0.501128379625565 0.744099653754315 0.020208418 0.034659535 prediction 0.4859425482575 Functional Gain - EFNB3 ENSG00000108947 CDS Human protein_coding chr17:7612525 chr17:7612526 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_110323 0 0 0 0 1 EFNB3 chr17:7612485 3'AG 7612485 Downstream 42bp
chr2 192257883 192257883 1 + C T STAD 192257882 + 192257862 192257902 41 ATATATCGGGGGTGGAAATGCCGCACACACTTCCTGCTAAT ATATATCGGGGGTGGAAATGCTGCACACACTTCCTGCTAAT < 41bp 0.546140492074093 0.789111351847134 0.062868685 0.024699956 prediction 0.485941719546082 Functional Gain - MYO1B ENSG00000128641 CDS Human protein_coding chr2:192257882 chr2:192257883 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_110325 0 0 1 0 2 MYO1B chr2:192257799 3'AG 192257799 Downstream 85bp
chr2 192257883 192257883 1 + C T STAD 192257882 + 192257862 192257902 41 ATATATCGGGGGTGGAAATGCCGCACACACTTCCTGCTAAT ATATATCGGGGGTGGAAATGCTGCACACACTTCCTGCTAAT < 41bp 0.546140492074093 0.789111351847134 0.062868685 0.024699956 prediction 0.485941719546082 Functional Gain - MYO1B ENSG00000128641 CDS Human protein_coding chr2:192257882 chr2:192257883 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_110325 0 0 1 0 2 MYO1B chr2:192257948 5'GT 192257948 Upstream 66bp
chr19 49671939 49671939 1 + C T SKCM 49671938 + 49671918 49671958 41 GGCTGCCTGGGGGGCGAGAACCGCTTCCGCTTGCGCCTGGA GGCTGCCTGGGGGGCGAGAACTGCTTCCGCTTGCGCCTGGA < 41bp 0.510625084096756 0.7535813775944 0.77972484 0.72995716 prediction 0.485912586995288 Functional Gain - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49671938 chr19:49671939 nonsynonymous SNV 0.992 2 22 hm5C_associated_SNPs_110326 0 0 1 0 1 TRPM4 chr19:49671993 5'GT 49671993 Upstream 55bp
chr20 57876686 57876686 1 + C A STAD 57876685 + 57876665 57876705 41 GCCGAGGGGGCCCCTGAGCACCACCGATCCAGGCGCTGCAC GCCGAGGGGGCCCCTGAGCACAACCGATCCAGGCGCTGCAC < 41bp 0.479754049528483 0.742954068284089 0.5970024 0.8479128 prediction 0.485908136568179 Functional Gain - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57876685 chr20:57876686 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_110328 0 0 0 0 1 EDN3 chr20:57876777 5'GT 57876777 Upstream 92bp
chr16 3100490 3100490 1 + C T rs574492122 3100489 + 3100469 3100509 41 GCCTTCTTCCCTGGGGAGCACCCCATCTCCGGGGACACTCA GCCTTCTTCCCTGGGGAGCACTCCATCTCCGGGGACACTCA < 41bp 0.472100260618884 0.74295215495527 0.48919806 0.9523623 prediction 0.48590430991054 Functional Gain - MMP25 ENSG00000008516 CDS Human protein_coding chr16:3100489 chr16:3100490 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_110329 0 0 0 0 1 MMP25 chr16:3100547 5'GT 3100547 Upstream 58bp
chr19 1430258 1430258 1 + C T SKCM 1430257 + 1430237 1430277 41 CCCTGCAGGAAGAGGAGCCCCCCCGCCACCCCCACCGTTCA CCCTGCAGGAAGAGGAGCCCCTCCGCCACCCCCACCGTTCA < 41bp 0.479004583032264 0.742947753084945 0.08855167 0.13863304 prediction 0.48589550616989 Functional Gain - DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1430257 chr19:1430258 synonymous SNV . 0 22 hm5C_associated_SNPs_110330 0 0 1 0 1 DAZAP1 chr19:1430221 3'AG 1430221 Downstream 38bp
chr17 48735550 48735550 1 + C T rs551439576 48735549 + 48735529 48735569 41 GGAGAAACCTCCATTTTTCTCCGCAAAGAATGTCGACCCTG GGAGAAACCTCCATTTTTCTCTGCAAAGAATGTCGACCCTG < 41bp 0.497548116932569 0.742947001232974 0.09011382 0.2934085 prediction 0.485894002465948 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48735549 chr17:48735550 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_110331 0 0 0 0 1 ABCC3 chr17:48735568 5'GT 48735568 Upstream 19bp
chr2 220379948 220379948 1 + C T UCEC 220379947 + 220379927 220379967 41 GACATGGTAGACATCCTCAACCGCACTGGCCACCAGCTCGC GACATGGTAGACATCCTCAACTGCACTGGCCACCAGCTCGC < 41bp 0.514911044562648 0.757855741046611 0.1985172 0.36112392 prediction 0.485889392967926 Functional Gain - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220379947 chr2:220379948 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_110333 0 0 0 0 1 ASIC4 chr2:220380028 5'GT 220380028 Upstream 81bp
chr9 36671045 36671045 1 + C T SKCM 36671044 + 36671024 36671064 41 AAGCACATATGGAGGAGACTCCAAAAAGAAAGGGAGCCAAA AAGCACATATGGAGGAGACTCTAAAAAGAAAGGGAGCCAAA < 41bp 0.532528505558194 0.775470338256935 0.08886066 0.13646513 prediction 0.485883665397481 Functional Gain - MELK ENSG00000165304 CDS Human protein_coding chr9:36671044 chr9:36671045 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_110335 0 0 0 0 1 MELK chr9:36670995 3'AG 36670995 Downstream 51bp
chr1 12040442 12040442 1 + T A rs2180182 12040438 + 12040418 12040458 41 CGAGGGGCAATCTGAGGCGACTGGTGACGCGCTTATCCACT CGAGGGGCAATCTGAGGCGACTGGAGACGCGCTTATCCACT < 41bp 0.516708356342909 0.759642075400468 0.3882833 0.7602774 prediction 0.485867438115117 Functional Gain - MFN2 ENSG00000116688 UTR5 Human protein_coding chr1:12040438 chr1:12040442 . . 0 25 hm5C_associated_SNPs_110337 2 0 0 0 1 MFN2 chr1:12040541 5'GT 12040541 Upstream 100bp
chr12 121659960 121659960 1 + C T SKCM 121659959 + 121659939 121659979 41 ACTGCCGGCTCTGCCGGCACCCACAGCAACGGTACGAGCTT ACTGCCGGCTCTGCCGGCACCTACAGCAACGGTACGAGCTT < 41bp 0.525284990931656 0.768214711699319 0.100238055 0.8882847 prediction 0.485859441535326 Functional Gain - P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121659959 chr12:121659960 nonsynonymous SNV 0.633 1 22 hm5C_associated_SNPs_110339 0 0 1 0 2 P2RX4 chr12:121659897 3'AG 121659897 Downstream 64bp
chr12 121659960 121659960 1 + C T SKCM 121659959 + 121659939 121659979 41 ACTGCCGGCTCTGCCGGCACCCACAGCAACGGTACGAGCTT ACTGCCGGCTCTGCCGGCACCTACAGCAACGGTACGAGCTT < 41bp 0.525284990931656 0.768214711699319 0.100238055 0.8882847 prediction 0.485859441535326 Functional Gain - P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121659959 chr12:121659960 nonsynonymous SNV 0.633 1 22 hm5C_associated_SNPs_110339 0 0 1 0 2 P2RX4 chr12:121659969 5'GT 121659969 Upstream 10bp
chr11 118245939 118245939 1 + T C COAD 118245937 + 118245917 118245957 41 CGAAAAATTAAAAATGTACACATGAGAGGTAGGAGAGAACC CGAAAAATTAAAAATGTACACACGAGAGGTAGGAGAGAACC < 41bp 0.572854253039912 0.815777833890352 0.28488082 0.13725579 prediction 0.48584716170088 Functional Gain - UBE4A ENSG00000110344 CDS Human protein_coding chr11:118245937 chr11:118245939 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_110340 0 0 1 0 1 UBE4A chr11:118245944 5'GT 118245944 Upstream 6bp
chr10 5956205 5956205 1 + C T HNSC 5956204 + 5956184 5956224 41 AATCACAAGATGGAACCTCTCCAGGTGGTGAAAATTATGGC AATCACAAGATGGAACCTCTCTAGGTGGTGAAAATTATGGC < 41bp 0.492299860750757 0.742922959910244 0.85408413 0.46311095 prediction 0.485845919820488 Functional Gain - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5956204 chr10:5956205 stopgain 0.999 1 22 hm5C_associated_SNPs_110341 0 0 1 0 2 FBXO18 chr10:5956141 3'AG 5956141 Downstream 65bp
chr10 5956205 5956205 1 + C T HNSC 5956204 + 5956184 5956224 41 AATCACAAGATGGAACCTCTCCAGGTGGTGAAAATTATGGC AATCACAAGATGGAACCTCTCTAGGTGGTGAAAATTATGGC < 41bp 0.492299860750757 0.742922959910244 0.85408413 0.46311095 prediction 0.485845919820488 Functional Gain - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5956204 chr10:5956205 stopgain 0.999 1 22 hm5C_associated_SNPs_110341 0 0 1 0 2 FBXO18 chr10:5956232 5'GT 5956232 Upstream 28bp
chr16 70503181 70503181 1 + C G SKCM 70503180 + 70503160 70503200 41 GCGGGTTATCTGCAGAGCGCCCGGGCCCAGCTGTGGAGGGA GCGGGTTATCTGCAGAGCGCCGGGGCCCAGCTGTGGAGGGA < 41bp 0.426766052931847 0.742921413194954 0.4484426 0.79745996 prediction 0.485842826389909 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70503180 chr16:70503181 nonsynonymous SNV 0.974 4 22 hm5C_associated_SNPs_110342 0 0 1 0 1 FUK chr16:70503226 5'GT 70503226 Upstream 46bp
chr4 90757845 90757845 1 + C A rs2619362 90757841 + 90757821 90757861 41 CACGACCATTCGTCTCCCATCCGGCGTTCTCCAGGATTTCC CACGACCATTCGTCTCCCATCCGGAGTTCTCCAGGATTTCC < 41bp 0.396859340915536 0.742905433692905 0.8900293 0.9182458 prediction 0.485810867385809 Functional Gain - SNCA-AS1 ENSG00000247775 ncRNA_exonic Human antisense chr4:90757841 chr4:90757845 . . 0 25 hm5C_associated_SNPs_110344 0 0 0 0 1 SNCA-AS1 chr4:90757885 5'GT 90757885 Upstream 41bp
chr19 39597698 39597698 1 + C T SKCM 39597697 + 39597677 39597717 41 ATCCTCAACGGGACCCACATCCACATCCAGCAGGTGTCGGA ATCCTCAACGGGACCCACATCTACATCCAGCAGGTGTCGGA < 41bp 0.481091320943595 0.742881428070128 0.17702165 0.5998728 prediction 0.485762856140256 Functional Gain - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39597697 chr19:39597698 nonsynonymous SNV 0.969 1 22 hm5C_associated_SNPs_110353 0 0 0 0 1 ACP7 chr19:39597724 5'GT 39597724 Upstream 27bp
chr3 40211568 40211568 1 + C A UCEC 40211564 + 40211544 40211584 41 CAGCATCCCCTGGAGGCTACCGTGCTCCCGCTGCCCTCTGG CAGCATCCCCTGGAGGCTACCGTGATCCCGCTGCCCTCTGG < 41bp 0.364352504034248 0.742864313656333 0.7921085 0.8935182 prediction 0.485728627312665 Functional Gain - MYRIP ENSG00000170011 CDS Human protein_coding chr3:40211564 chr3:40211568 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_110357 0 0 0 0 1 MYRIP chr3:40211584 5'GT 40211584 Upstream 17bp
chr18 29645911 29645911 1 + T G UCEC 29645909 + 29645889 29645929 41 CCCGATGAGAATCCAAGCAGCTTCAGTGGCAGTTTAATAAG CCCGATGAGAATCCAAGCAGCTGCAGTGGCAGTTTAATAAG < 41bp 0.417240266191489 0.742864169113449 0.15255392 0.23589933 prediction 0.485728338226898 Functional Gain - RNF125 ENSG00000101695 CDS Human protein_coding chr18:29645909 chr18:29645911 nonsynonymous SNV 0.747 4 23 hm5C_associated_SNPs_110358 0 0 0 0 2 RNF125 chr18:29645865 3'AG 29645865 Downstream 47bp
chr18 29645911 29645911 1 + T G UCEC 29645909 + 29645889 29645929 41 CCCGATGAGAATCCAAGCAGCTTCAGTGGCAGTTTAATAAG CCCGATGAGAATCCAAGCAGCTGCAGTGGCAGTTTAATAAG < 41bp 0.417240266191489 0.742864169113449 0.15255392 0.23589933 prediction 0.485728338226898 Functional Gain - RNF125 ENSG00000101695 CDS Human protein_coding chr18:29645909 chr18:29645911 nonsynonymous SNV 0.747 4 23 hm5C_associated_SNPs_110358 0 0 0 0 2 RNF125 chr18:29645972 5'GT 29645972 Upstream 62bp
chr19 1430303 1430303 1 + T C rs113778676 1430301 + 1430281 1430321 41 CCTACATCGTGTCCACCCCTCCTGGAGGCTTTCCCCCTCCC CCTACATCGTGTCCACCCCTCCCGGAGGCTTTCCCCCTCCC < 41bp 0.53441896389571 0.77726490883355 0.2722767 0.44439837 prediction 0.48569188987568 Functional Gain - DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1430301 chr19:1430303 synonymous SNV . 0 23 hm5C_associated_SNPs_110364 0 0 1 0 2 DAZAP1 chr19:1430221 3'AG 1430221 Downstream 83bp
chr19 1430303 1430303 1 + T C rs113778676 1430301 + 1430281 1430321 41 CCTACATCGTGTCCACCCCTCCTGGAGGCTTTCCCCCTCCC CCTACATCGTGTCCACCCCTCCCGGAGGCTTTCCCCCTCCC < 41bp 0.53441896389571 0.77726490883355 0.2722767 0.44439837 prediction 0.48569188987568 Functional Gain - DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1430301 chr19:1430303 synonymous SNV . 0 23 hm5C_associated_SNPs_110364 0 0 1 0 2 DAZAP1 chr19:1430361 5'GT 1430361 Upstream 59bp
chr17 4846201 4846201 1 + C A rs138467394 4846200 + 4846180 4846220 41 ATTTATTGGGGAGAGAAGCTCCGAGTACCTGCGTGCCCTCT ATTTATTGGGGAGAGAAGCTCAGAGTACCTGCGTGCCCTCT < 41bp 0.553818105221434 0.796638837006602 0.87479186 0.934167 prediction 0.485641463570336 Functional Gain - RNF167 ENSG00000108523 CDS Human protein_coding chr17:4846200 chr17:4846201 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_110371 0 0 1 0 2 RNF167 chr17:4846146 3'AG 4846146 Downstream 56bp
chr17 4846201 4846201 1 + C A rs138467394 4846200 + 4846180 4846220 41 ATTTATTGGGGAGAGAAGCTCCGAGTACCTGCGTGCCCTCT ATTTATTGGGGAGAGAAGCTCAGAGTACCTGCGTGCCCTCT < 41bp 0.553818105221434 0.796638837006602 0.87479186 0.934167 prediction 0.485641463570336 Functional Gain - RNF167 ENSG00000108523 CDS Human protein_coding chr17:4846200 chr17:4846201 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_110371 0 0 1 0 2 RNF167 chr17:4846236 5'GT 4846236 Upstream 36bp
chr4 39046653 39046653 1 + C G rs550365512 39046652 + 39046632 39046672 41 CGGCCCCGGCCCCCGCCTCCCCCGCTCCTCCCGCCTGGCCG CGGCCCCGGCCCCCGCCTCCCGCGCTCCTCCCGCCTGGCCG < 41bp 0.571331496907537 0.814148949558569 0.18450117 0.20607427 prediction 0.485634905302064 Functional Gain - KLHL5 ENSG00000109790 upstream Human protein_coding chr4:39046652 chr4:39046653 . . 0 22 hm5C_associated_SNPs_110373 0 0 0 0 1 KLHL5 chr4:39046716 5'GT 39046716 Upstream 64bp
chr19 42797368 42797368 1 + C A BLCA 42797367 + 42797347 42797387 41 GAGACCTGGACTCCCACGGCCCGGAGCAGCCCCCCACTGCC GAGACCTGGACTCCCACGGCCAGGAGCAGCCCCCCACTGCC < 41bp 0.523767086196885 0.766565467629652 0.28351256 0.8608388 prediction 0.485596762865533 Functional Gain - CIC ENSG00000079432 CDS Human protein_coding chr19:42797367 chr19:42797368 synonymous SNV . 0 22 hm5C_associated_SNPs_110378 0 0 1 0 1 CIC chr19:42797433 5'GT 42797433 Upstream 66bp
chrX 54578136 54578136 1 + C T SKCM 54578135 + 54578115 54578155 41 GAAGCTGGCAGACCCTGTGACCCCAGTGGAGACCATCCTGC GAAGCTGGCAGACCCTGTGACTCCAGTGGAGACCATCCTGC < 41bp 0.565102521762172 0.80789478553644 0.4629483 0.9430895 prediction 0.485584527548536 Functional Gain - GNL3L ENSG00000130119 CDS Human protein_coding chrX:54578135 chrX:54578136 synonymous SNV . 0 22 hm5C_associated_SNPs_110380 0 0 1 0 1 GNL3L chrX:54578175 5'GT 54578175 Upstream 40bp
chrX 23956699 23956699 1 + C A HNSC 23956695 + 23956675 23956715 41 TAACTGTCCAACCTCTATATCGGCCCTACAAACAGCAAAAT TAACTGTCCAACCTCTATATCGGCACTACAAACAGCAAAAT < 41bp 0.334161103405089 0.742788070973888 0.40935 0.34906885 prediction 0.485576141947777 Functional Gain - CXorf58 ENSG00000165182 CDS Human protein_coding chrX:23956695 chrX:23956699 nonsynonymous SNV 0.005 2 25 hm5C_associated_SNPs_110381 0 0 0 0 1 CXorf58 chrX:23956664 3'AG 23956664 Downstream 36bp
chr9 117027709 117027709 1 + C A rs7048607 117027708 + 117027688 117027728 41 CCTTGTCTCTGCAGGGCATCCCGGGTCCCTCAGGCCCCCCA CCTTGTCTCTGCAGGGCATCCAGGGTCCCTCAGGCCCCCCA < 41bp 0.535559522930514 0.778344501306711 0.9229212 0.92407095 prediction 0.485569956752394 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117027708 chr9:117027709 nonsynonymous SNV 0.993 1 22 hm5C_associated_SNPs_110382 0 0 1 0 2 COL27A1 chr9:117027702 3'AG 117027702 Downstream 8bp
chr9 117027709 117027709 1 + C A rs7048607 117027708 + 117027688 117027728 41 CCTTGTCTCTGCAGGGCATCCCGGGTCCCTCAGGCCCCCCA CCTTGTCTCTGCAGGGCATCCAGGGTCCCTCAGGCCCCCCA < 41bp 0.535559522930514 0.778344501306711 0.9229212 0.92407095 prediction 0.485569956752394 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117027708 chr9:117027709 nonsynonymous SNV 0.993 1 22 hm5C_associated_SNPs_110382 0 0 1 0 2 COL27A1 chr9:117027755 5'GT 117027755 Upstream 47bp
chr9 90345955 90345955 1 + T C UCEC 90345953 + 90345933 90345973 41 GAATGGGGCATGGGTGGCTACGTAAAGATGGCCAAAGACCG GAATGGGGCATGGGTGGCTACGCAAAGATGGCCAAAGACCG < 41bp 0.564206116160861 0.806985518062141 0.1682947 0.16580012 prediction 0.48555880380256 Functional Gain - CTSL ENSG00000135047 CDS Human protein_coding chr9:90345953 chr9:90345955 nonsynonymous SNV 0.420 1 23 hm5C_associated_SNPs_110383 0 0 1 0 1 CTSL chr9:90345923 3'AG 90345923 Downstream 33bp
chr2 74076552 74076552 1 + C T UCEC 74076551 + 74076531 74076571 41 CGGCTGTGCCCACAGTTTCTCCAGTTAGCCAGTGCCAACAC CGGCTGTGCCCACAGTTTCTCTAGTTAGCCAGTGCCAACAC < 41bp 0.533947912623771 0.776707812340421 0.16173404 0.28849477 prediction 0.4855197994333 Functional Gain - STAMBP ENSG00000124356 CDS Human protein_coding chr2:74076551 chr2:74076552 stopgain 0.987 1 22 hm5C_associated_SNPs_110386 0 0 1 0 2 STAMBP chr2:74076490 3'AG 74076490 Downstream 63bp
chr2 74076552 74076552 1 + C T UCEC 74076551 + 74076531 74076571 41 CGGCTGTGCCCACAGTTTCTCCAGTTAGCCAGTGCCAACAC CGGCTGTGCCCACAGTTTCTCTAGTTAGCCAGTGCCAACAC < 41bp 0.533947912623771 0.776707812340421 0.16173404 0.28849477 prediction 0.4855197994333 Functional Gain - STAMBP ENSG00000124356 CDS Human protein_coding chr2:74076551 chr2:74076552 stopgain 0.987 1 22 hm5C_associated_SNPs_110386 0 0 1 0 2 STAMBP chr2:74076614 5'GT 74076614 Upstream 63bp
chrX 47230114 47230114 1 + C A SKCM 47230113 + 47230093 47230133 41 AGAGATTCCCTGCCCTGATTCCAGGAGAACCTGGCAGATCT AGAGATTCCCTGCCCTGATTCAAGGAGAACCTGGCAGATCT < 41bp 0.526589540097186 0.769341778313037 0.89104867 0.90354216 prediction 0.485504476431702 Functional Gain - ZNF157 ENSG00000147117 CDS Human protein_coding chrX:47230113 chrX:47230114 nonsynonymous SNV 0.565 2 22 hm5C_associated_SNPs_110390 0 0 0 0 1 ZNF157 chrX:47230139 5'GT 47230139 Upstream 26bp
chr9 846983 846983 1 + C T UCEC 846982 + 846962 847002 41 GGCCCTGAGAAGGCAGCAGGCCCAGGAGGAGGAATTGGGTA GGCCCTGAGAAGGCAGCAGGCTCAGGAGGAGGAATTGGGTA < 41bp 0.498978016917271 0.742751368353264 0.38197184 0.4875631 prediction 0.485502736706528 Functional Gain - DMRT1 ENSG00000137090 CDS Human protein_coding chr9:846982 chr9:846983 synonymous SNV . 0 22 hm5C_associated_SNPs_110391 0 0 0 0 1 DMRT1 chr9:846960 3'AG 846960 Downstream 24bp
chr20 2381087 2381087 1 + T C rs111506138 2381085 + 2381065 2381105 41 GAGGACCTGACAGAAGACAGCATGTGGTGGGTCCTGCCCCC GAGGACCTGACAGAAGACAGCACGTGGTGGGTCCTGCCCCC < 41bp 0.524451021796998 0.767201942988929 0.29121184 0.26348752 prediction 0.485501842383864 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2381085 chr20:2381087 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_110392 0 0 0 0 1 TGM6 chr20:2381090 5'GT 2381090 Upstream 4bp
chr20 31596430 31596430 1 + T A rs149889663 31596426 + 31596406 31596446 41 TGCTGCTGGCACTGCTGCTGCCCGTGGTCGGTGCCTCCACG TGCTGCTGGCACTGCTGCTGCCCGAGGTCGGTGCCTCCACG < 41bp 0.42196948186226 0.742745900786633 0.30486512 0.8305242 prediction 0.485491801573267 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31596426 chr20:31596430 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_110393 0 0 1 0 2 BPIFB2 chr20:31596347 3'AG 31596347 Downstream 84bp
chr20 31596430 31596430 1 + T A rs149889663 31596426 + 31596406 31596446 41 TGCTGCTGGCACTGCTGCTGCCCGTGGTCGGTGCCTCCACG TGCTGCTGGCACTGCTGCTGCCCGAGGTCGGTGCCTCCACG < 41bp 0.42196948186226 0.742745900786633 0.30486512 0.8305242 prediction 0.485491801573267 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31596426 chr20:31596430 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_110393 0 0 1 0 2 BPIFB2 chr20:31596489 5'GT 31596489 Upstream 60bp
chr7 73944105 73944105 1 + C T LIHC 73944104 + 73944084 73944124 41 CACATGGTCCCCGTGCCCTACCGGAAGATTGCCTGTGACCC CACATGGTCCCCGTGCCCTACTGGAAGATTGCCTGTGACCC < 41bp 0.552881541120985 0.795619651511728 0.77410066 0.21903211 prediction 0.485476220781485 Functional Gain - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73944104 chr7:73944105 nonsynonymous SNV 0.970 4 22 hm5C_associated_SNPs_110396 0 0 1 0 1 GTF2IRD1 chr7:73944064 3'AG 73944064 Downstream 42bp
chr19 39760453 39760453 1 + C T UCEC 39760452 + 39760432 39760472 41 CTGTACCGGCTCCAGGAGGCCCCAAAAAAGGTGAGTGACCC CTGTACCGGCTCCAGGAGGCCTCAAAAAAGGTGAGTGACCC < 41bp 0.501221749805451 0.743954327747796 0.1757482 0.8923906 prediction 0.485465155884691 Functional Gain - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39760452 chr19:39760453 nonsynonymous SNV 0.010 0 22 hm5C_associated_SNPs_110398 0 0 0 0 2 IFNL2 chr19:39760378 3'AG 39760378 Downstream 76bp
chr19 39760453 39760453 1 + C T UCEC 39760452 + 39760432 39760472 41 CTGTACCGGCTCCAGGAGGCCCCAAAAAAGGTGAGTGACCC CTGTACCGGCTCCAGGAGGCCTCAAAAAAGGTGAGTGACCC < 41bp 0.501221749805451 0.743954327747796 0.1757482 0.8923906 prediction 0.485465155884691 Functional Gain - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39760452 chr19:39760453 nonsynonymous SNV 0.010 0 22 hm5C_associated_SNPs_110398 0 0 0 0 2 IFNL2 chr19:39760461 5'GT 39760461 Upstream 9bp
chr19 8321168 8321168 1 + C A HNSC 8321167 + 8321147 8321187 41 TGCTGGGACAGGTACCCAAACCAGGTGAGTGGCAGAGTGTG TGCTGGGACAGGTACCCAAACAAGGTGAGTGGCAGAGTGTG < 41bp 0.477822157052584 0.742724007754395 0.73063135 0.7646407 prediction 0.48544801550879 Functional Gain - CERS4 ENSG00000090661 CDS Human protein_coding chr19:8321167 chr19:8321168 nonsynonymous SNV 0.157 3 22 hm5C_associated_SNPs_110402 0 0 1 0 2 CERS4 chr19:8321120 3'AG 8321120 Downstream 49bp
chr19 8321168 8321168 1 + C A HNSC 8321167 + 8321147 8321187 41 TGCTGGGACAGGTACCCAAACCAGGTGAGTGGCAGAGTGTG TGCTGGGACAGGTACCCAAACAAGGTGAGTGGCAGAGTGTG < 41bp 0.477822157052584 0.742724007754395 0.73063135 0.7646407 prediction 0.48544801550879 Functional Gain - CERS4 ENSG00000090661 CDS Human protein_coding chr19:8321167 chr19:8321168 nonsynonymous SNV 0.157 3 22 hm5C_associated_SNPs_110402 0 0 1 0 2 CERS4 chr19:8321170 5'GT 8321170 Upstream 3bp
chr12 107075814 107075814 1 - G T LUAD 107075815 - 107075795 107075835 41 TACTTTGACTGTCCTCGGGTCCCGAGTCTTCTGGTGGTTAA TACTTTGACTGTCCTCGGGTCACGAGTCTTCTGGTGGTTAA < 41bp 0.513958270069356 0.756680641136347 0.088561475 0.07733446 prediction 0.485444742133983 Functional Gain - RFX4 ENSG00000111783 CDS Human other chr12:107075815 chr12:107075814 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_110403 0 0 0 0 1 LOC100505978;RFX4 chr12:107075769 5'GT 107075769 Upstream 46bp
chr8 27279824 27279824 1 + C T COAD 27279823 + 27279803 27279843 41 GACCTTTCTCCCCACCAGCTCCGGAACGACTACATGCAGCG GACCTTTCTCCCCACCAGCTCTGGAACGACTACATGCAGCG < 41bp 0.501764846861917 0.744484911375063 0.5085107 0.35869774 prediction 0.485440129026291 Functional Gain - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27279823 chr8:27279824 nonsynonymous SNV 0.958 4 22 hm5C_associated_SNPs_110404 0 0 1 0 2 PTK2B chr8:27279821 3'AG 27279821 Downstream 4bp
chr8 27279824 27279824 1 + C T COAD 27279823 + 27279803 27279843 41 GACCTTTCTCCCCACCAGCTCCGGAACGACTACATGCAGCG GACCTTTCTCCCCACCAGCTCTGGAACGACTACATGCAGCG < 41bp 0.501764846861917 0.744484911375063 0.5085107 0.35869774 prediction 0.485440129026291 Functional Gain - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27279823 chr8:27279824 nonsynonymous SNV 0.958 4 22 hm5C_associated_SNPs_110404 0 0 1 0 2 PTK2B chr8:27279900 5'GT 27279900 Upstream 77bp
chr17 40765934 40765934 1 + T C UCEC 40765932 + 40765912 40765952 41 GGCTACATGAACAATGACCTCATCGGCCTCATCGCCTCGCT GGCTACATGAACAATGACCTCACCGGCCTCATCGCCTCGCT < 41bp 0.467214115218111 0.742716034860749 0.114892215 0.1086925 prediction 0.485432069721499 Functional Gain - TUBG1 ENSG00000131462 CDS Human protein_coding chr17:40765932 chr17:40765934 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_110405 0 0 1 0 2 TUBG1 chr17:40765867 3'AG 40765867 Downstream 68bp
chr17 40765934 40765934 1 + T C UCEC 40765932 + 40765912 40765952 41 GGCTACATGAACAATGACCTCATCGGCCTCATCGCCTCGCT GGCTACATGAACAATGACCTCACCGGCCTCATCGCCTCGCT < 41bp 0.467214115218111 0.742716034860749 0.114892215 0.1086925 prediction 0.485432069721499 Functional Gain - TUBG1 ENSG00000131462 CDS Human protein_coding chr17:40765932 chr17:40765934 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_110405 0 0 1 0 2 TUBG1 chr17:40766016 5'GT 40766016 Upstream 83bp
chr12 125612781 125612781 1 + C T CESC 125612780 + 125612760 125612800 41 TATAAAGGGGAGATTCAGGCCCGGAACCTGGGCATGGCCGT TATAAAGGGGAGATTCAGGCCTGGAACCTGGGCATGGCCGT < 41bp 0.493848803337301 0.74271493643876 0.19251895 0.12868232 prediction 0.485429872877519 Functional Gain - AACS ENSG00000081760 CDS Human protein_coding chr12:125612780 chr12:125612781 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_110406 0 0 0 0 2 AACS chr12:125612707 3'AG 125612707 Downstream 75bp
chr12 125612781 125612781 1 + C T CESC 125612780 + 125612760 125612800 41 TATAAAGGGGAGATTCAGGCCCGGAACCTGGGCATGGCCGT TATAAAGGGGAGATTCAGGCCTGGAACCTGGGCATGGCCGT < 41bp 0.493848803337301 0.74271493643876 0.19251895 0.12868232 prediction 0.485429872877519 Functional Gain - AACS ENSG00000081760 CDS Human protein_coding chr12:125612780 chr12:125612781 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_110406 0 0 0 0 2 AACS chr12:125612820 5'GT 125612820 Upstream 40bp
chr10 127677181 127677181 1 + C A LUSC 127677180 + 127677160 127677200 41 AGGACGCTGTACAGATTTCGCCTGAAGGTCACCAGCCCCTC AGGACGCTGTACAGATTTCGCATGAAGGTCACCAGCCCCTC < 41bp 0.539889597874154 0.782604251293406 0.045517266 0.13772127 prediction 0.485429306838504 Functional Gain - FANK1 ENSG00000203780 CDS Human protein_coding chr10:127677180 chr10:127677181 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_110407 0 0 0 0 2 FANK1 chr10:127677120 3'AG 127677120 Downstream 62bp
chr10 127677181 127677181 1 + C A LUSC 127677180 + 127677160 127677200 41 AGGACGCTGTACAGATTTCGCCTGAAGGTCACCAGCCCCTC AGGACGCTGTACAGATTTCGCATGAAGGTCACCAGCCCCTC < 41bp 0.539889597874154 0.782604251293406 0.045517266 0.13772127 prediction 0.485429306838504 Functional Gain - FANK1 ENSG00000203780 CDS Human protein_coding chr10:127677180 chr10:127677181 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_110407 0 0 0 0 2 FANK1 chr10:127677244 5'GT 127677244 Upstream 64bp
chr21 37716981 37716981 1 + T C UCEC 37716979 + 37716959 37716999 41 AGAGTCTTGCCTACATCGAACGTGATGTTTATCGACCAAAA AGAGTCTTGCCTACATCGAACGCGATGTTTATCGACCAAAA < 41bp 0.46949283213884 0.74271340706438 0.23841864 0.14323068 prediction 0.485426814128761 Functional Gain - MORC3 ENSG00000159256 CDS Human protein_coding chr21:37716979 chr21:37716981 synonymous SNV . 0 23 hm5C_associated_SNPs_110408 0 0 1 0 1 MORC3 chr21:37717005 5'GT 37717005 Upstream 25bp
chr1 55518385 55518385 1 + C A rs41297883 55518381 + 55518361 55518401 41 GGTGGTCAGCGGCCGGGATGCCGGCGTGGCCAAGGGTGCCA GGTGGTCAGCGGCCGGGATGCCGGAGTGGCCAAGGGTGCCA < 41bp 0.67866540874611 0.921376042242362 0.7471318 0.8499836 prediction 0.485421266992504 Functional Gain - PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55518381 chr1:55518385 synonymous SNV . 0 25 hm5C_associated_SNPs_110409 0 0 1 0 1 PCSK9 chr1:55518323 3'AG 55518323 Downstream 63bp
chr11 14156972 14156972 1 + C A LUSC 14156968 + 14156948 14156988 41 CCTGATTGGCTTTCCCAGGTCGGGCCAACCACTGGTCTGCG CCTGATTGGCTTTCCCAGGTCGGGACAACCACTGGTCTGCG < 41bp 0.366325390232981 0.742708226763441 0.6254132 0.8122901 prediction 0.485416453526883 Functional Gain - SPON1 ENSG00000152268 ncRNA_exonic Human other chr11:14156968 chr11:14156972 . 1.000 1 25 hm5C_associated_SNPs_110410 0 0 0 0 1 SPON1 chr11:14156966 3'AG 14156966 Downstream 7bp
chr20 4705236 4705236 1 + C G LUAD 4705232 + 4705212 4705252 41 GAGCTGGTGGTGGCTGGCCACTGTCTGCATGCTGCTCTTCA GAGCTGGTGGTGGCTGGCCACTGTGTGCATGCTGCTCTTCA < 41bp 0.450753403912767 0.742705456743344 0.021154016 0.04938957 prediction 0.485410913486688 Functional Gain - PRND ENSG00000171864 CDS Human protein_coding chr20:4705232 chr20:4705236 synonymous SNV . 0 25 hm5C_associated_SNPs_110411 0 0 0 0 1 PRND chr20:4705187 3'AG 4705187 Downstream 50bp
chr5 170736747 170736747 1 + C A STAD 170736746 + 170736726 170736766 41 CCTTGGCGGTCTCAATTTCCCCTGGATGGAGAGCAGCCGCC CCTTGGCGGTCTCAATTTCCCATGGATGGAGAGCAGCCGCC < 41bp 0.510383144691402 0.753086224153738 0.037608653 0.18661472 prediction 0.485406158924673 Functional Gain - TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736746 chr5:170736747 synonymous SNV . 0 22 hm5C_associated_SNPs_110412 0 0 0 0 1 TLX3 chr5:170736790 5'GT 170736790 Upstream 44bp
chr10 112769572 112769572 1 + C A ESCA 112769568 + 112769548 112769588 41 CCTTGGAGAGAACCTACTTACTCACCTTCCTGAAGAAATTG CCTTGGAGAGAACCTACTTACTCAACTTCCTGAAGAAATTG < 41bp 0.317137743137392 0.742700599185067 0.021056563 0.063479185 prediction 0.485401198370135 Functional Gain - SHOC2 ENSG00000108061 CDS Human protein_coding chr10:112769568 chr10:112769572 nonsynonymous SNV 0.990 0 25 hm5C_associated_SNPs_110413 0 0 1 0 1 SHOC2 chr10:112769588 5'GT 112769588 Upstream 17bp
chr19 19334907 19334907 1 + A G SKCM 19334904 + 19334884 19334924 41 AGGCCCAGGAGGCCTGCCGTCTCAGCTCAGCCATCATTGCA AGGCCCAGGAGGCCTGCCGTCTCGGCTCAGCCATCATTGCA < 41bp 0.504843522557702 0.747539237325598 0.10246524 0.08654547 prediction 0.485391429535792 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19334904 chr19:19334907 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_110415 0 0 0 0 2 NCAN chr19:19334830 3'AG 19334830 Downstream 78bp
chr19 19334907 19334907 1 + A G SKCM 19334904 + 19334884 19334924 41 AGGCCCAGGAGGCCTGCCGTCTCAGCTCAGCCATCATTGCA AGGCCCAGGAGGCCTGCCGTCTCGGCTCAGCCATCATTGCA < 41bp 0.504843522557702 0.747539237325598 0.10246524 0.08654547 prediction 0.485391429535792 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19334904 chr19:19334907 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_110415 0 0 0 0 2 NCAN chr19:19335004 5'GT 19335004 Upstream 98bp
chr1 44169289 44169289 1 - G C LUSC 44169293 - 44169273 44169313 41 GGACCAAACTGGAGACAGTCCTGGCTCTGAGGAAACAGGAA GGACCAAACTGGAGACAGTCCTGGGTCTGAGGAAACAGGAA < 41bp 0.572636257253155 0.815328619681178 0.12776193 0.25111127 prediction 0.485384724856045 Functional Gain - KDM4A ENSG00000066135 CDS Human antisense chr1:44169293 chr1:44169289 nonsynonymous SNV 0.994 2 25 hm5C_associated_SNPs_110417 0 0 1 0 2 KDM4A-AS1 chr1:44169235 5'GT 44169235 Upstream 55bp
chr1 44169289 44169289 1 - G C LUSC 44169293 - 44169273 44169313 41 GGACCAAACTGGAGACAGTCCTGGCTCTGAGGAAACAGGAA GGACCAAACTGGAGACAGTCCTGGGTCTGAGGAAACAGGAA < 41bp 0.572636257253155 0.815328619681178 0.12776193 0.25111127 prediction 0.485384724856045 Functional Gain - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44169293 chr1:44169289 nonsynonymous SNV 0.994 2 25 hm5C_associated_SNPs_110417 0 0 1 0 2 KDM4A chr1:44169318 3'AG 44169318 Downstream 30bp
chrX 129045771 129045771 1 + C T rs745419974 129045770 + 129045750 129045790 41 AGAAGTAGCATTCAATAAAACCGCACAAGTCCTCTCCAAAT AGAAGTAGCATTCAATAAAACTGCACAAGTCCTCTCCAAAT < 41bp 0.494075790217388 0.742674103677976 0.069869846 0.09338704 prediction 0.485348207355951 Functional Gain - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129045770 chrX:129045771 synonymous SNV . 0 22 hm5C_associated_SNPs_110419 0 0 0 0 1 UTP14A chrX:129045742 3'AG 129045742 Downstream 30bp
chr11 71849902 71849902 1 + C T SKCM 71849901 + 71849881 71849921 41 GGGAGCTCCTCAAGGGCCCTCCCCAGGAAGTGTTCCTCTGG GGGAGCTCCTCAAGGGCCCTCTCCAGGAAGTGTTCCTCTGG < 41bp 0.52381668076049 0.76646527095832 0.17005527 0.95892894 prediction 0.48529718039566 Functional Gain - FOLR3 ENSG00000110203 CDS Human protein_coding chr11:71849901 chr11:71849902 synonymous SNV . 0 22 hm5C_associated_SNPs_110423 0 0 0 0 1 FOLR3 chr11:71849879 3'AG 71849879 Downstream 24bp
chr19 56549464 56549464 1 + A G COAD 56549461 + 56549441 56549481 41 TCCTTACGACCTCCCCCAGCCTGAAATCTCTGAGCCTGGCA TCCTTACGACCTCCCCCAGCCTGGAATCTCTGAGCCTGGCA < 41bp 0.508488250263662 0.751135714628675 0.1066286 0.19491127 prediction 0.485294928730026 Functional Gain - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56549461 chr19:56549464 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_110424 0 0 0 0 2 NLRP5 chr19:56549391 3'AG 56549391 Downstream 74bp
chr19 56549464 56549464 1 + A G COAD 56549461 + 56549441 56549481 41 TCCTTACGACCTCCCCCAGCCTGAAATCTCTGAGCCTGGCA TCCTTACGACCTCCCCCAGCCTGGAATCTCTGAGCCTGGCA < 41bp 0.508488250263662 0.751135714628675 0.1066286 0.19491127 prediction 0.485294928730026 Functional Gain - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56549461 chr19:56549464 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_110424 0 0 0 0 2 NLRP5 chr19:56549561 5'GT 56549561 Upstream 98bp
chr3 142499740 142499740 1 + C T CESC 142499739 + 142499719 142499759 41 AAGGATTTACTTGCACAAGCCCGGAATTCTCGTGAATTGGA AAGGATTTACTTGCACAAGCCTGGAATTCTCGTGAATTGGA < 41bp 0.493837078580541 0.742645968288705 0.25687006 0.2819984 prediction 0.48529193657741 Functional Gain - TRPC1 ENSG00000144935 CDS Human protein_coding chr3:142499739 chr3:142499740 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_110425 0 0 1 0 1 TRPC1 chr3:142499676 3'AG 142499676 Downstream 65bp
chr10 99212022 99212022 1 + C T STAD 99212021 + 99212001 99212041 41 ACTACCAGGCCATCACCACTCCGCCTGGGTACCCACCCCAG ACTACCAGGCCATCACCACTCTGCCTGGGTACCCACCCCAG < 41bp 0.51120591776941 0.75384952553482 0.11722258 0.16919869 prediction 0.485287215530819 Functional Gain - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99212021 chr10:99212022 nonsynonymous SNV 0.940 1 22 hm5C_associated_SNPs_110427 0 0 1 0 1 ZDHHC16 chr10:99212041 5'GT 99212041 Upstream 20bp
chrX 134480966 134480966 1 + C A rs140129178 134480962 + 134480942 134480982 41 AGCTGTAGGTGGCTCCCTCCCACCCCAACGATTTCAGAGAG AGCTGTAGGTGGCTCCCTCCCACCACAACGATTTCAGAGAG < 41bp 0.339964115930801 0.742635699867886 0.1608625 0.13202876 prediction 0.485271399735773 Functional Gain - ZNF449 ENSG00000173275 UTR5 Human protein_coding chrX:134480962 chrX:134480966 . . 0 25 hm5C_associated_SNPs_110429 0 0 0 0 1 ZNF449 chrX:134480944 3'AG 134480944 Downstream 23bp
chr11 199447 199447 1 + C A TGCT 199446 + 199426 199466 41 CCGCAGTACACCATGGCTGCCCGTGTGGAGCCCCCAGGGGA CCGCAGTACACCATGGCTGCCAGTGTGGAGCCCCCAGGGGA < 41bp 0.484092424233072 0.742633617781881 0.1583798 0.22750929 prediction 0.485267235563762 Functional Gain - ODF3 ENSG00000177947 CDS Human protein_coding chr11:199446 chr11:199447 nonsynonymous SNV 0.920 3 22 hm5C_associated_SNPs_110430 0 0 0 0 2 ODF3 chr11:199369 3'AG 199369 Downstream 79bp
chr11 199447 199447 1 + C A TGCT 199446 + 199426 199466 41 CCGCAGTACACCATGGCTGCCCGTGTGGAGCCCCCAGGGGA CCGCAGTACACCATGGCTGCCAGTGTGGAGCCCCCAGGGGA < 41bp 0.484092424233072 0.742633617781881 0.1583798 0.22750929 prediction 0.485267235563762 Functional Gain - ODF3 ENSG00000177947 CDS Human protein_coding chr11:199446 chr11:199447 nonsynonymous SNV 0.920 3 22 hm5C_associated_SNPs_110430 0 0 0 0 2 ODF3 chr11:199509 5'GT 199509 Upstream 63bp
chr11 18422524 18422524 1 + C T LUAD 18422523 + 18422503 18422543 41 CCTAATGTTGTAAAATACAGCCCGAACTGCAAGTTGCTTAT CCTAATGTTGTAAAATACAGCTCGAACTGCAAGTTGCTTAT < 41bp 0.524012264637524 0.766644491977358 0.007093519 0.024189472 prediction 0.485264454679667 Functional Gain - LDHA ENSG00000134333 CDS Human protein_coding chr11:18422523 chr11:18422524 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_110431 0 0 0 0 1 LDHA chr11:18422557 5'GT 18422557 Upstream 34bp
chr20 55052100 55052100 1 + T G UCEC 55052097 + 55052077 55052117 41 TGGGAAGGGGATAAAGGAAACACTAAAGGTGACAAGCACGA TGGGAAGGGGATAAAGGAAACACGAAAGGTGACAAGCACGA < 41bp 0.671548195539201 0.914175032525899 0.105510265 0.10532829 prediction 0.485253673973396 Functional Gain - RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55052097 chr20:55052100 synonymous SNV . 0 24 hm5C_associated_SNPs_110434 0 0 1 0 2 RTFDC1 chr20:55052041 3'AG 55052041 Downstream 60bp
chr20 55052100 55052100 1 + T G UCEC 55052097 + 55052077 55052117 41 TGGGAAGGGGATAAAGGAAACACTAAAGGTGACAAGCACGA TGGGAAGGGGATAAAGGAAACACGAAAGGTGACAAGCACGA < 41bp 0.671548195539201 0.914175032525899 0.105510265 0.10532829 prediction 0.485253673973396 Functional Gain - RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55052097 chr20:55052100 synonymous SNV . 0 24 hm5C_associated_SNPs_110434 0 0 1 0 2 RTFDC1 chr20:55052180 5'GT 55052180 Upstream 81bp
chr2 1544391 1544391 1 + C A LUSC 1544387 + 1544367 1544407 41 ACACGCACTGGCACTAAATCCACACTGCCCATCTCGGAGAC ACACGCACTGGCACTAAATCCACAATGCCCATCTCGGAGAC < 41bp 0.341322531767694 0.742625787747696 0.020936638 0.053488165 prediction 0.485251575495392 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1544387 chr2:1544391 nonsynonymous SNV 0.005 3 25 hm5C_associated_SNPs_110435 0 0 0 0 1 TPO chr2:1544366 3'AG 1544366 Downstream 26bp
chr21 43979129 43979129 1 + T C COAD 43979127 + 43979107 43979147 41 GGCTCCATCCACCCGAACCACGTCGTCATTCTCCCCGGGGA GGCTCCATCCACCCGAACCACGCCGTCATTCTCCCCGGGGA < 41bp 0.478260053352143 0.742624443487465 0.2340633 0.26895213 prediction 0.485248886974931 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43979127 chr21:43979129 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_110436 0 0 0 0 2 SLC37A1 chr21:43979068 3'AG 43979068 Downstream 62bp
chr21 43979129 43979129 1 + T C COAD 43979127 + 43979107 43979147 41 GGCTCCATCCACCCGAACCACGTCGTCATTCTCCCCGGGGA GGCTCCATCCACCCGAACCACGCCGTCATTCTCCCCGGGGA < 41bp 0.478260053352143 0.742624443487465 0.2340633 0.26895213 prediction 0.485248886974931 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43979127 chr21:43979129 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_110436 0 0 0 0 2 SLC37A1 chr21:43979199 5'GT 43979199 Upstream 71bp
chr16 8738530 8738530 1 + C T SKCM 8738529 + 8738509 8738549 41 AGCTGCGCTTCGTGGTGGAGCCCGTGGAGGCCTCCTTCCCA AGCTGCGCTTCGTGGTGGAGCTCGTGGAGGCCTCCTTCCCA < 41bp 0.508467731966693 0.751077713725578 0.42633465 0.37641588 prediction 0.48521996351777 Functional Gain - METTL22 ENSG00000067365 CDS Human protein_coding chr16:8738529 chr16:8738530 nonsynonymous SNV 0.978 0 22 hm5C_associated_SNPs_110441 0 0 1 0 1 METTL22 chr16:8738582 5'GT 8738582 Upstream 53bp
chr16 2259370 2259370 1 - G T SKCM 2259371 - 2259351 2259391 41 CGGTCTGCTTTTATTACCTCCCAGACTGAGCCCCCGACCTG CGGTCTGCTTTTATTACCTCCAAGACTGAGCCCCCGACCTG < 41bp 0.527455596780108 0.770064419233621 0.027563304 0.046735406 prediction 0.485217644907026 Functional Gain - BRICD5 ENSG00000182685 CDS Human protein_coding chr16:2259371 chr16:2259370 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_110442 0 0 1 0 1 BRICD5 chr16:2259457 3'AG 2259457 Downstream 88bp
chr2 127453543 127453543 1 + T C rs115201071 127453541 + 127453521 127453561 41 GGTGTGATTGCTGCTGTGGCCATCGTCCTAGTCTCCCTCCT GGTGTGATTGCTGCTGTGGCCACCGTCCTAGTCTCCCTCCT < 41bp 0.54079050418991 0.783398119843382 0.1149348 0.110987574 prediction 0.485215231306943 Functional Gain - GYPC ENSG00000136732 CDS Human protein_coding chr2:127453541 chr2:127453543 nonsynonymous SNV 0.007 1 23 hm5C_associated_SNPs_110443 0 0 1 1 1 GYPC chr2:127453522 3'AG 127453522 Downstream 22bp
chr2 201507473 201507473 1 + C T UCEC 201507472 + 201507452 201507492 41 TCCTCAGGCAGCGCTGATCACCGAATCTTGTATCACGGAAG TCCTCAGGCAGCGCTGATCACTGAATCTTGTATCACGGAAG < 41bp 0.53484502166077 0.777450962402532 0.34574223 0.41650894 prediction 0.485211881483524 Functional Gain - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201507472 chr2:201507473 synonymous SNV . 0 22 hm5C_associated_SNPs_110444 0 0 0 0 1 AOX1 chr2:201507524 5'GT 201507524 Upstream 52bp
chr1 179339176 179339176 1 + C T SKCM 179339175 + 179339155 179339195 41 CGAAGGAATAAATTCAAATACCTGATTGACCATCCCGTCTC CGAAGGAATAAATTCAAATACTTGATTGACCATCCCGTCTC < 41bp 0.52482443399833 0.767427603140266 0.15372774 0.21510357 prediction 0.485206338283872 Functional Gain - AXDND1 ENSG00000162779 CDS Human protein_coding chr1:179339175 chr1:179339176 synonymous SNV . 0 22 hm5C_associated_SNPs_110446 0 0 0 1 2 AXDND1 chr1:179339110 3'AG 179339110 Downstream 67bp
chr1 179339176 179339176 1 + C T SKCM 179339175 + 179339155 179339195 41 CGAAGGAATAAATTCAAATACCTGATTGACCATCCCGTCTC CGAAGGAATAAATTCAAATACTTGATTGACCATCCCGTCTC < 41bp 0.52482443399833 0.767427603140266 0.15372774 0.21510357 prediction 0.485206338283872 Functional Gain - AXDND1 ENSG00000162779 CDS Human protein_coding chr1:179339175 chr1:179339176 synonymous SNV . 0 22 hm5C_associated_SNPs_110446 0 0 0 1 2 AXDND1 chr1:179339213 5'GT 179339213 Upstream 38bp
chr4 118954990 118954990 1 + C G rs552012650 118954986 + 118954966 118955006 41 ACCGCGTAGCACCCAAGCGCCACCCGGACGAGGGGCCCTGG ACCGCGTAGCACCCAAGCGCCACCGGGACGAGGGGCCCTGG < 41bp 0.573480529525863 0.816078124143891 0.16805354 0.34650332 prediction 0.485195189236057 Functional Gain - NDST3 ENSG00000164100 upstream Human protein_coding chr4:118954986 chr4:118954990 . . 0 25 hm5C_associated_SNPs_110449 0 0 0 0 1 NDST3 chr4:118955066 5'GT 118955066 Upstream 77bp
chr6 97561719 97561719 1 + T G LUSC 97561716 + 97561696 97561736 41 AGTACATGGACGAGCTCCTGCAATACATCCGCTTTGGCCTA AGTACATGGACGAGCTCCTGCAAGACATCCGCTTTGGCCTA < 41bp 0.352826817967251 0.74259149546328 0.111849725 0.38199267 prediction 0.48518299092656 Functional Gain - KLHL32 ENSG00000186231 CDS Human protein_coding chr6:97561716 chr6:97561719 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_110451 0 0 0 0 1 KLHL32 chr6:97561659 3'AG 97561659 Downstream 61bp
chr6 16129557 16129557 1 + C A CESC 16129553 + 16129533 16129573 41 GCGGCAGCGGCAGCCCCAGCCATGCTGTGTTATGTGACGAG GCGGCAGCGGCAGCCCCAGCCATGATGTGTTATGTGACGAG < 41bp 0.502861692943038 0.745451900651003 0.30397046 0.39082476 prediction 0.485180415415932 Functional Gain - MYLIP ENSG00000007944 CDS Human protein_coding chr6:16129553 chr6:16129557 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_110452 0 0 0 0 1 MYLIP chr6:16129640 5'GT 16129640 Upstream 84bp
chr8 26265602 26265602 1 + C T COAD 26265601 + 26265581 26265621 41 ATCAGACTGGTCCAGTAGACCCGAAAACATTCCACCCAAGT ATCAGACTGGTCCAGTAGACCTGAAAACATTCCACCCAAGT < 41bp 0.488080566296487 0.742567868981344 0.05517727 0.06465912 prediction 0.485135737962687 Functional Gain - BNIP3L ENSG00000104765 CDS Human protein_coding chr8:26265601 chr8:26265602 synonymous SNV . 0 22 hm5C_associated_SNPs_110457 0 0 1 0 2 BNIP3L chr8:26265516 3'AG 26265516 Downstream 87bp
chr8 26265602 26265602 1 + C T COAD 26265601 + 26265581 26265621 41 ATCAGACTGGTCCAGTAGACCCGAAAACATTCCACCCAAGT ATCAGACTGGTCCAGTAGACCTGAAAACATTCCACCCAAGT < 41bp 0.488080566296487 0.742567868981344 0.05517727 0.06465912 prediction 0.485135737962687 Functional Gain - BNIP3L ENSG00000104765 CDS Human protein_coding chr8:26265601 chr8:26265602 synonymous SNV . 0 22 hm5C_associated_SNPs_110457 0 0 1 0 2 BNIP3L chr8:26265619 5'GT 26265619 Upstream 18bp
chr17 7984215 7984215 1 - G C rs143010639 7984216 - 7984196 7984236 41 CCGGTGCGGAGGCATCGCAACCCCAACCGGCCTGAGTAAGG CCGGTGCGGAGGCATCGCAACGCCAACCGGCCTGAGTAAGG < 41bp 0.421988327879763 0.742560802132307 0.17013285 0.85624623 prediction 0.485121604264614 Functional Gain - ALOX12B ENSG00000179477 CDS Human protein_coding chr17:7984216 chr17:7984215 nonsynonymous SNV 0.447 2 22 hm5C_associated_SNPs_110458 0 0 0 0 2 ALOX12B chr17:7984202 5'GT 7984202 Upstream 14bp
chr17 7984215 7984215 1 - G C rs143010639 7984216 - 7984196 7984236 41 CCGGTGCGGAGGCATCGCAACCCCAACCGGCCTGAGTAAGG CCGGTGCGGAGGCATCGCAACGCCAACCGGCCTGAGTAAGG < 41bp 0.421988327879763 0.742560802132307 0.17013285 0.85624623 prediction 0.485121604264614 Functional Gain - ALOX12B ENSG00000179477 CDS Human protein_coding chr17:7984216 chr17:7984215 nonsynonymous SNV 0.447 2 22 hm5C_associated_SNPs_110458 0 0 0 0 2 ALOX12B chr17:7984294 3'AG 7984294 Downstream 80bp
chrX 49105145 49105145 1 + C T SKCM 49105144 + 49105124 49105164 41 CAAGAACTGCACCAGAGTGTCCGGGCGGCTGCTGAAGAGGC CAAGAACTGCACCAGAGTGTCTGGGCGGCTGCTGAAGAGGC < 41bp 0.500197697666941 0.742752677190819 0.81229055 0.8436304 prediction 0.485109959047755 Functional Gain - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49105144 chrX:49105145 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_110459 0 0 0 0 2 CCDC22 chrX:49105094 3'AG 49105094 Downstream 52bp
chrX 49105145 49105145 1 + C T SKCM 49105144 + 49105124 49105164 41 CAAGAACTGCACCAGAGTGTCCGGGCGGCTGCTGAAGAGGC CAAGAACTGCACCAGAGTGTCTGGGCGGCTGCTGAAGAGGC < 41bp 0.500197697666941 0.742752677190819 0.81229055 0.8436304 prediction 0.485109959047755 Functional Gain - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49105144 chrX:49105145 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_110459 0 0 0 0 2 CCDC22 chrX:49105195 5'GT 49105195 Upstream 51bp
chr12 124144091 124144091 1 + T C CESC 124144089 + 124144069 124144109 41 GACATCACGGGAGGACTGTACCTGAAGGTGCCTCAGATGCC GACATCACGGGAGGACTGTACCCGAAGGTGCCTCAGATGCC < 41bp 0.446549095016993 0.742553676784534 0.08420169 0.14844143 prediction 0.485107353569069 Functional Gain - GTF2H3 ENSG00000111358 CDS Human protein_coding chr12:124144089 chr12:124144091 nonsynonymous SNV 0.980 4 23 hm5C_associated_SNPs_110460 0 0 1 0 2 GTF2H3 chr12:124144063 3'AG 124144063 Downstream 29bp
chr12 124144091 124144091 1 + T C CESC 124144089 + 124144069 124144109 41 GACATCACGGGAGGACTGTACCTGAAGGTGCCTCAGATGCC GACATCACGGGAGGACTGTACCCGAAGGTGCCTCAGATGCC < 41bp 0.446549095016993 0.742553676784534 0.08420169 0.14844143 prediction 0.485107353569069 Functional Gain - GTF2H3 ENSG00000111358 CDS Human protein_coding chr12:124144089 chr12:124144091 nonsynonymous SNV 0.980 4 23 hm5C_associated_SNPs_110460 0 0 1 0 2 GTF2H3 chr12:124144131 5'GT 124144131 Upstream 41bp
chr2 239025630 239025630 1 + T C rs11904159 239025628 + 239025608 239025648 41 CGGCAGACCTGGCGGAGTACCATGGACACCGGGACTGCGCC CGGCAGACCTGGCGGAGTACCACGGACACCGGGACTGCGCC < 41bp 0.481891501933551 0.742536706227757 0.7682842 0.8674667 prediction 0.485073412455514 Functional Gain - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239025628 chr2:239025630 synonymous SNV . 0 23 hm5C_associated_SNPs_110463 0 0 0 0 2 ESPNL chr2:239025544 3'AG 239025544 Downstream 87bp
chr2 239025630 239025630 1 + T C rs11904159 239025628 + 239025608 239025648 41 CGGCAGACCTGGCGGAGTACCATGGACACCGGGACTGCGCC CGGCAGACCTGGCGGAGTACCACGGACACCGGGACTGCGCC < 41bp 0.481891501933551 0.742536706227757 0.7682842 0.8674667 prediction 0.485073412455514 Functional Gain - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239025628 chr2:239025630 synonymous SNV . 0 23 hm5C_associated_SNPs_110463 0 0 0 0 2 ESPNL chr2:239025675 5'GT 239025675 Upstream 46bp
chr19 48925117 48925117 1 + C T UCEC 48925116 + 48925096 48925136 41 GGCTCCACGGAGAAGAACATCCGCAGCAACTATCCCGACAT GGCTCCACGGAGAAGAACATCTGCAGCAACTATCCCGACAT < 41bp 0.541113989206737 0.783643197117506 0.16000387 0.27782124 prediction 0.485058415821538 Functional Gain - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48925116 chr19:48925117 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_110465 0 0 0 0 2 GRIN2D chr19:48925042 3'AG 48925042 Downstream 76bp
chr19 48925117 48925117 1 + C T UCEC 48925116 + 48925096 48925136 41 GGCTCCACGGAGAAGAACATCCGCAGCAACTATCCCGACAT GGCTCCACGGAGAAGAACATCTGCAGCAACTATCCCGACAT < 41bp 0.541113989206737 0.783643197117506 0.16000387 0.27782124 prediction 0.485058415821538 Functional Gain - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48925116 chr19:48925117 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_110465 0 0 0 0 2 GRIN2D chr19:48925149 5'GT 48925149 Upstream 33bp
chr1 206613361 206613361 1 + C T OV 206613360 + 206613340 206613380 41 CAGGAGAGAGCTCTGCACATCCGGAAAGTCCTCCTAGTCCT CAGGAGAGAGCTCTGCACATCTGGAAAGTCCTCCTAGTCCT < 41bp 0.540620660644502 0.783148653131081 0.24537855 0.2605027 prediction 0.485055984973159 Functional Gain - SRGAP2 ENSG00000163486 CDS Human other chr1:206613360 chr1:206613361 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_110466 0 0 1 0 2 SRGAP2 chr1:206613326 3'AG 206613326 Downstream 36bp
chr1 206613361 206613361 1 + C T OV 206613360 + 206613340 206613380 41 CAGGAGAGAGCTCTGCACATCCGGAAAGTCCTCCTAGTCCT CAGGAGAGAGCTCTGCACATCTGGAAAGTCCTCCTAGTCCT < 41bp 0.540620660644502 0.783148653131081 0.24537855 0.2605027 prediction 0.485055984973159 Functional Gain - SRGAP2 ENSG00000163486 CDS Human other chr1:206613360 chr1:206613361 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_110466 0 0 1 0 2 SRGAP2 chr1:206613431 5'GT 206613431 Upstream 71bp
chrX 26158127 26158127 1 + C A UCEC 26158123 + 26158103 26158143 41 CCACGTCTAGCAGCTTCTCCCATGCTAAGTGAAATCTGAGG CCACGTCTAGCAGCTTCTCCCATGATAAGTGAAATCTGAGG < 41bp 0.356099303746374 0.742520015682079 0.24267757 0.25447184 prediction 0.485040031364159 Functional Gain - MAGEB18 ENSG00000176774 CDS Human protein_coding chrX:26158123 chrX:26158127 nonsynonymous SNV 0.718 1 25 hm5C_associated_SNPs_110468 0 0 0 0 1 MAGEB18 chrX:26158170 5'GT 26158170 Upstream 44bp
chr17 9515758 9515758 1 + T A UCEC 9515754 + 9515734 9515774 41 TTTCAAAGAGACGCTCATAGCGACTTGTCACTTTGATGCTG TTTCAAAGAGACGCTCATAGCGACATGTCACTTTGATGCTG < 41bp 0.640056881113794 0.882573642200679 0.07154739 0.39372808 prediction 0.485033522173768 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9515754 chr17:9515758 synonymous SNV . 0 25 hm5C_associated_SNPs_110469 0 0 0 0 1 CFAP52 chr17:9515796 5'GT 9515796 Upstream 39bp
chr19 54401709 54401709 1 + C G HNSC 54401705 + 54401685 54401725 41 TGCGCATAGGTGATGCTGGCCGAGCGCAGGGGCTCTGATGA TGCGCATAGGTGATGCTGGCCGAGGGCAGGGGCTCTGATGA < 41bp 0.442273686115913 0.742515194553692 0.176554 0.7374343 prediction 0.485030389107383 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54401705 chr19:54401709 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_110470 0 0 0 0 1 PRKCG chr19:54401694 3'AG 54401694 Downstream 16bp
chr11 284296 284296 1 + C A HNSC 284295 + 284275 284315 41 TGAGGCCCTGAGGGCAGCCCCCGCACTGACGGAGCTGGGCC TGAGGCCCTGAGGGCAGCCCCAGCACTGACGGAGCTGGGCC < 41bp 0.536107257091974 0.778620155683473 0.13776898 0.37112772 prediction 0.485025797182999 Functional Gain - NLRP6 ENSG00000174885 CDS Human protein_coding chr11:284295 chr11:284296 synonymous SNV . 0 22 hm5C_associated_SNPs_110471 0 0 0 0 1 NLRP6 chr11:284230 3'AG 284230 Downstream 67bp
chr19 39760454 39760454 1 + C A COAD 39760453 + 39760433 39760473 41 TGTACCGGCTCCAGGAGGCCCCAAAAAAGGTGAGTGACCCG TGTACCGGCTCCAGGAGGCCCAAAAAAAGGTGAGTGACCCG < 41bp 0.490743375397866 0.742511186898483 0.071133226 0.1909008 prediction 0.485022373796966 Functional Gain - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39760453 chr19:39760454 nonsynonymous SNV 0.005 0 22 hm5C_associated_SNPs_110472 0 0 0 0 2 IFNL2 chr19:39760378 3'AG 39760378 Downstream 77bp
chr19 39760454 39760454 1 + C A COAD 39760453 + 39760433 39760473 41 TGTACCGGCTCCAGGAGGCCCCAAAAAAGGTGAGTGACCCG TGTACCGGCTCCAGGAGGCCCAAAAAAAGGTGAGTGACCCG < 41bp 0.490743375397866 0.742511186898483 0.071133226 0.1909008 prediction 0.485022373796966 Functional Gain - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39760453 chr19:39760454 nonsynonymous SNV 0.005 0 22 hm5C_associated_SNPs_110472 0 0 0 0 2 IFNL2 chr19:39760461 5'GT 39760461 Upstream 8bp
chr12 119591420 119591420 1 + C T UCEC 119591419 + 119591399 119591439 41 AGCAGAAGCTCTAGGTCCCGCCGCAGCCCTAGCTACTCCCG AGCAGAAGCTCTAGGTCCCGCTGCAGCCCTAGCTACTCCCG < 41bp 0.513340529043821 0.755844934092033 0.07381463 0.07730731 prediction 0.485008810096425 Functional Gain - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119591419 chr12:119591420 nonsynonymous SNV 0.868 4 22 hm5C_associated_SNPs_110475 0 0 1 0 2 SRRM4 chr12:119591344 3'AG 119591344 Downstream 77bp
chr12 119591420 119591420 1 + C T UCEC 119591419 + 119591399 119591439 41 AGCAGAAGCTCTAGGTCCCGCCGCAGCCCTAGCTACTCCCG AGCAGAAGCTCTAGGTCCCGCTGCAGCCCTAGCTACTCCCG < 41bp 0.513340529043821 0.755844934092033 0.07381463 0.07730731 prediction 0.485008810096425 Functional Gain - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119591419 chr12:119591420 nonsynonymous SNV 0.868 4 22 hm5C_associated_SNPs_110475 0 0 1 0 2 SRRM4 chr12:119591454 5'GT 119591454 Upstream 35bp
chr1 32681070 32681070 1 + C A rs11590013 32681069 + 32681049 32681089 41 GGAGTATATGGAGCTCCCCACCGAAGGAAGGAGACAGCGGG GGAGTATATGGAGCTCCCCACAGAAGGAAGGAGACAGCGGG < 41bp 0.476289125975757 0.742503779107168 0.6342933 0.7377722 prediction 0.485007558214336 Functional Gain - DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32681069 chr1:32681070 synonymous SNV . 0 22 hm5C_associated_SNPs_110476 0 0 0 0 2 DCDC2B chr1:32681041 3'AG 32681041 Downstream 30bp
chr1 32681070 32681070 1 + C A rs11590013 32681069 + 32681049 32681089 41 GGAGTATATGGAGCTCCCCACCGAAGGAAGGAGACAGCGGG GGAGTATATGGAGCTCCCCACAGAAGGAAGGAGACAGCGGG < 41bp 0.476289125975757 0.742503779107168 0.6342933 0.7377722 prediction 0.485007558214336 Functional Gain - DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32681069 chr1:32681070 synonymous SNV . 0 22 hm5C_associated_SNPs_110476 0 0 0 0 2 DCDC2B chr1:32681144 5'GT 32681144 Upstream 75bp
chr7 100780299 100780299 1 + C A LUAD 100780298 + 100780278 100780318 41 GCAGCTGTCATAGTCTCAGCCCGCATGGCCCCCGAGGAGAT GCAGCTGTCATAGTCTCAGCCAGCATGGCCCCCGAGGAGAT < 41bp 0.504504814626425 0.746992011307091 0.03740543 0.114620894 prediction 0.484974393361332 Functional Gain - SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100780298 chr7:100780299 nonsynonymous SNV 0.066 4 22 hm5C_associated_SNPs_110479 0 0 1 0 2 SERPINE1 chr7:100780282 3'AG 100780282 Downstream 18bp
chr7 100780299 100780299 1 + C A LUAD 100780298 + 100780278 100780318 41 GCAGCTGTCATAGTCTCAGCCCGCATGGCCCCCGAGGAGAT GCAGCTGTCATAGTCTCAGCCAGCATGGCCCCCGAGGAGAT < 41bp 0.504504814626425 0.746992011307091 0.03740543 0.114620894 prediction 0.484974393361332 Functional Gain - SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100780298 chr7:100780299 nonsynonymous SNV 0.066 4 22 hm5C_associated_SNPs_110479 0 0 1 0 2 SERPINE1 chr7:100780365 5'GT 100780365 Upstream 67bp
chr2 79350279 79350279 1 + C A HNSC 79350278 + 79350258 79350298 41 TCTCATTGACTTATAGGATTCCAGAAATGGAAGGATGTGCC TCTCATTGACTTATAGGATTCAAGAAATGGAAGGATGTGCC < 41bp 0.497147744240327 0.742484202801309 0.11201766 0.10160625 prediction 0.484968405602619 Functional Gain - REG1A ENSG00000115386 CDS Human protein_coding chr2:79350278 chr2:79350279 nonsynonymous SNV 0.014 0 22 hm5C_associated_SNPs_110480 0 0 0 0 1 REG1A chr2:79350274 3'AG 79350274 Downstream 6bp
chr1 16374411 16374411 1 + C A LGG 16374410 + 16374390 16374430 41 CCCCGCCAAGGTTCTGGAATCCCGGAGGTGAAGACCATGTT CCCCGCCAAGGTTCTGGAATCACGGAGGTGAAGACCATGTT < 41bp 0.479200834944104 0.742483500079393 0.91022825 0.91318274 prediction 0.484967000158786 Functional Gain - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16374410 chr1:16374411 nonsynonymous SNV 0.306 5 22 hm5C_associated_SNPs_110481 0 0 0 0 1 CLCNKB chr1:16374400 3'AG 16374400 Downstream 12bp
chr3 112969477 112969477 1 + T G OV 112969475 + 112969455 112969495 41 GGCACTGTGATCTTGGGCTGCGTGGTGGAACCTCCAAGGAT GGCACTGTGATCTTGGGCTGCGGGGTGGAACCTCCAAGGAT < 41bp 0.407431591953656 0.742479447108264 0.37713984 0.8759688 prediction 0.484958894216527 Functional Gain - BOC ENSG00000144857 CDS Human protein_coding chr3:112969475 chr3:112969477 nonsynonymous SNV 0.681 0 23 hm5C_associated_SNPs_110482 0 0 1 0 1 BOC chr3:112969402 3'AG 112969402 Downstream 76bp
chr19 35551628 35551628 1 + C G KIRC 35551624 + 35551604 35551644 41 CTGGGGGTGCAGGCTGTGGTCTACCACGGGGGCTATCTTCC CTGGGGGTGCAGGCTGTGGTCTACGACGGGGGCTATCTTCC < 41bp 0.446169837256319 0.742473211419871 0.010421097 0.08652645 prediction 0.484946422839742 Functional Gain - HPN ENSG00000105707 CDS Human protein_coding chr19:35551624 chr19:35551628 nonsynonymous SNV 0.789 5 25 hm5C_associated_SNPs_110485 0 0 1 0 2 HPN chr19:35551531 3'AG 35551531 Downstream 98bp
chr19 35551628 35551628 1 + C G KIRC 35551624 + 35551604 35551644 41 CTGGGGGTGCAGGCTGTGGTCTACCACGGGGGCTATCTTCC CTGGGGGTGCAGGCTGTGGTCTACGACGGGGGCTATCTTCC < 41bp 0.446169837256319 0.742473211419871 0.010421097 0.08652645 prediction 0.484946422839742 Functional Gain - HPN ENSG00000105707 CDS Human protein_coding chr19:35551624 chr19:35551628 nonsynonymous SNV 0.789 5 25 hm5C_associated_SNPs_110485 0 0 1 0 2 HPN chr19:35551721 5'GT 35551721 Upstream 94bp
chr12 118462787 118462787 1 + C T COAD 118462786 + 118462766 118462806 41 ACTCCTGAACTCATGGTTCCCCGCCTGGAACATGTCGTGGA ACTCCTGAACTCATGGTTCCCTGCCTGGAACATGTCGTGGA < 41bp 0.487263103973753 0.742468927950046 0.02110058 0.02468136 prediction 0.484937855900091 Functional Gain - RFC5 ENSG00000111445 CDS Human protein_coding chr12:118462786 chr12:118462787 nonsynonymous SNV 0.986 3 22 hm5C_associated_SNPs_110486 0 0 1 0 1 RFC5 chr12:118462815 5'GT 118462815 Upstream 29bp
chr11 66325188 66325188 1 + C A LUAD 66325187 + 66325167 66325207 41 CAGCTGCTGGAGTGGATCCGCCGCACTGTCCCATGGCTGGA CAGCTGCTGGAGTGGATCCGCAGCACTGTCCCATGGCTGGA < 41bp 0.542894493481235 0.785358984230015 0.26771212 0.38699508 prediction 0.48492898149756 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66325187 chr11:66325188 unknown 0.992 0 22 hm5C_associated_SNPs_110487 0 0 0 0 1 ACTN3 chr11:66325170 3'AG 66325170 Downstream 19bp
chr17 46000348 46000348 1 + C T rs146862346 46000347 + 46000327 46000367 41 GGTCTACATCCGCACGCCTTCCGGTGAGGTGCAGACAGTCC GGTCTACATCCGCACGCCTTCTGGTGAGGTGCAGACAGTCC < 41bp 0.493566891066364 0.742462162737034 0.30984813 0.1639741 prediction 0.484924325474068 Functional Gain - SP2 ENSG00000167182 CDS Human protein_coding chr17:46000347 chr17:46000348 synonymous SNV . 0 22 hm5C_associated_SNPs_110488 0 0 1 0 1 SP2 chr17:46000328 3'AG 46000328 Downstream 21bp
chr1 89844158 89844158 1 + T C UCEC 89844156 + 89844136 89844176 41 GATGAATACCTGGAGAATGCCTTGAAGCTGATTCAAGGTAT GATGAATACCTGGAGAATGCCTCGAAGCTGATTCAAGGTAT < 41bp 0.596679919106065 0.83913922474211 0.17932555 0.89744985 prediction 0.484918611272091 Functional Gain - GBP6 ENSG00000183347 CDS Human protein_coding chr1:89844156 chr1:89844158 nonsynonymous SNV 0.251 4 23 hm5C_associated_SNPs_110489 0 0 0 0 1 GBP6 chr1:89844172 5'GT 89844172 Upstream 15bp
chr9 127055225 127055225 1 + C A UCEC 127055224 + 127055204 127055244 41 AGGCTGCCTGGAGGAGATGCCCAGGAGAGAAGTTTGCTGGG AGGCTGCCTGGAGGAGATGCCAAGGAGAGAAGTTTGCTGGG < 41bp 0.544148834649968 0.786607953547847 0.82768583 0.8814038 prediction 0.484918237795756 Functional Gain - NEK6 ENSG00000119408 CDS Human protein_coding chr9:127055224 chr9:127055225 synonymous SNV . 0 22 hm5C_associated_SNPs_110490 0 0 1 0 2 NEK6 chr9:127055128 3'AG 127055128 Downstream 98bp
chr9 127055225 127055225 1 + C A UCEC 127055224 + 127055204 127055244 41 AGGCTGCCTGGAGGAGATGCCCAGGAGAGAAGTTTGCTGGG AGGCTGCCTGGAGGAGATGCCAAGGAGAGAAGTTTGCTGGG < 41bp 0.544148834649968 0.786607953547847 0.82768583 0.8814038 prediction 0.484918237795756 Functional Gain - NEK6 ENSG00000119408 CDS Human protein_coding chr9:127055224 chr9:127055225 synonymous SNV . 0 22 hm5C_associated_SNPs_110490 0 0 1 0 2 NEK6 chr9:127055292 5'GT 127055292 Upstream 68bp
chr5 50683345 50683345 1 + C A LUAD 50683344 + 50683324 50683364 41 GTTGTACGGGATCAAATGCGCCAAGTGCAGCATCGGCTTCA GTTGTACGGGATCAAATGCGCAAAGTGCAGCATCGGCTTCA < 41bp 0.530085125025942 0.772541401225533 0.3332684 0.43039972 prediction 0.484912552399181 Functional Gain - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50683344 chr5:50683345 synonymous SNV . 0 22 hm5C_associated_SNPs_110491 0 0 0 0 1 ISL1 chr5:50683324 3'AG 50683324 Downstream 22bp
chr7 31123759 31123759 1 + T C COAD 31123757 + 31123737 31123777 41 AGTTTTCTTTTTGCTGCAGACATGGGAGTGGTGAGCCGGAA AGTTTTCTTTTTGCTGCAGACACGGGAGTGGTGAGCCGGAA < 41bp 0.474238013418054 0.742443068921563 0.40498927 0.34151238 prediction 0.484886137843126 Functional Gain - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31123757 chr7:31123759 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_110493 0 0 0 0 1 ADCYAP1R1 chr7:31123756 3'AG 31123756 Downstream 4bp
chr19 55420813 55420813 1 + C T STAD 55420812 + 55420792 55420832 41 ACAGCCCACCGAGGGACATACCGATGTTTTGGCTCCTATAA ACAGCCCACCGAGGGACATACTGATGTTTTGGCTCCTATAA < 41bp 0.509689261971937 0.752119467165586 0.2884553 0.20283133 prediction 0.484860410387298 Functional Gain - NCR1 ENSG00000189430 CDS Human protein_coding chr19:55420812 chr19:55420813 stopgain 0.149 0 22 hm5C_associated_SNPs_110495 0 0 0 0 1 NCR1 chr19:55420882 5'GT 55420882 Upstream 70bp
chr2 47601106 47601106 1 + T C rs1126497 47601104 + 47601084 47601124 41 AAGCAGTGCAACGGCACCTCCATGTGCTGGTGTGTGAACAC AAGCAGTGCAACGGCACCTCCACGTGCTGGTGTGTGAACAC < 41bp 0.577641207368952 0.820067618692375 0.23409873 0.3419457 prediction 0.484852822646847 Functional Gain - EPCAM ENSG00000119888 CDS Human protein_coding chr2:47601104 chr2:47601106 nonsynonymous SNV 0.815 0 23 hm5C_associated_SNPs_110496 3 0 1 0 1 EPCAM chr2:47601187 5'GT 47601187 Upstream 82bp
chr6 167721278 167721278 1 + C A LUSC 167721277 + 167721257 167721297 41 GCACCCCCAGGCGCGGTGACCCACGTGTCCTGCATGATTGC GCACCCCCAGGCGCGGTGACCAACGTGTCCTGCATGATTGC < 41bp 0.483465605888832 0.742424611836751 0.08984488 0.08209288 prediction 0.484849223673502 Functional Gain - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167721277 chr6:167721278 nonsynonymous SNV 0.005 1 22 hm5C_associated_SNPs_110497 0 0 0 0 1 UNC93A chr6:167721267 3'AG 167721267 Downstream 12bp
chr3 136701039 136701039 1 + C T SARC 136701038 + 136701018 136701058 41 TACACGAGCCACATCTGGATCCCCAGCAGCTGGTGCTCACT TACACGAGCCACATCTGGATCTCCAGCAGCTGGTGCTCACT < 41bp 0.465977325725116 0.742421515739589 0.016827762 0.9497814 prediction 0.484843031479179 Functional Gain - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136701038 chr3:136701039 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_110498 0 0 0 4 1 IL20RB chr3:136701002 3'AG 136701002 Downstream 38bp
chr19 11485519 11485519 1 + C A STAD 11485518 + 11485498 11485538 41 CTAGAGGCGGCGGGGGAGGGCCAAGGCCCAGTCCTCTTCCT CTAGAGGCGGCGGGGGAGGGCAAAGGCCCAGTCCTCTTCCT < 41bp 0.532228016889225 0.774643078352114 0.82460606 0.7858412 prediction 0.484830122925779 Functional Gain - SWSAP1 ENSG00000173928 CDS Human protein_coding chr19:11485518 chr19:11485519 nonsynonymous SNV 0.754 0 22 hm5C_associated_SNPs_110502 0 0 0 0 1 SWSAP1 chr19:11485605 5'GT 11485605 Upstream 87bp
chr2 108875244 108875244 1 + T C rs6722745 108875242 + 108875222 108875262 41 GGATGGTGGGCTGCAAAAGACATGCACCGGATCCTCTACCT GGATGGTGGGCTGCAAAAGACACGCACCGGATCCTCTACCT < 41bp 0.555918400486719 0.79833298445594 0.043589562 0.065843105 prediction 0.484829167938441 Functional Gain - SULT1C3 ENSG00000196228 CDS Human protein_coding chr2:108875242 chr2:108875244 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_110503 0 1 0 0 2 SULT1C3 chr2:108875190 3'AG 108875190 Downstream 55bp
chr2 108875244 108875244 1 + T C rs6722745 108875242 + 108875222 108875262 41 GGATGGTGGGCTGCAAAAGACATGCACCGGATCCTCTACCT GGATGGTGGGCTGCAAAAGACACGCACCGGATCCTCTACCT < 41bp 0.555918400486719 0.79833298445594 0.043589562 0.065843105 prediction 0.484829167938441 Functional Gain - SULT1C3 ENSG00000196228 CDS Human protein_coding chr2:108875242 chr2:108875244 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_110503 0 1 0 0 2 SULT1C3 chr2:108875284 5'GT 108875284 Upstream 41bp
chr3 63638424 63638424 1 + C A rs565513339 63638420 + 63638400 63638440 41 CTCCACTTGGAAGGAGATCCCAATCCTTCTGCAGCCCCAAC CTCCACTTGGAAGGAGATCCCAATACTTCTGCAGCCCCAAC < 41bp 0.35991375502668 0.742412295818165 0.21350417 0.26671517 prediction 0.48482459163633 Functional Gain - SNTN ENSG00000188817 CDS Human protein_coding chr3:63638420 chr3:63638424 nonsynonymous SNV 0.044 0 25 hm5C_associated_SNPs_110504 0 0 0 0 1 SNTN chr3:63638473 5'GT 63638473 Upstream 50bp
chr16 5047036 5047036 1 + C A OV 5047035 + 5047015 5047055 41 TATGCAGGGGGCTGGCATTACCAGGACATAGGTGCGTGCCT TATGCAGGGGGCTGGCATTACAAGGACATAGGTGCGTGCCT < 41bp 0.474224842008674 0.742411422171208 0.89855003 0.882823 prediction 0.484822844342415 Functional Gain - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5047035 chr16:5047036 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_110506 0 0 0 0 1 SEC14L5 chr16:5047045 5'GT 5047045 Upstream 10bp
chr10 75868839 75868839 1 + C T UCEC 75868838 + 75868818 75868858 41 AGAGTTCCCTGAGCAGAAGGCCGGGGAGGTGATTAACCAGC AGAGTTCCCTGAGCAGAAGGCTGGGGAGGTGATTAACCAGC < 41bp 0.510943398418908 0.753352850303823 0.88832223 0.83509284 prediction 0.48481890376983 Functional Gain - VCL ENSG00000035403 CDS Human protein_coding chr10:75868838 chr10:75868839 synonymous SNV . 0 22 hm5C_associated_SNPs_110507 0 0 1 0 2 VCL chr10:75868777 3'AG 75868777 Downstream 63bp
chr10 75868839 75868839 1 + C T UCEC 75868838 + 75868818 75868858 41 AGAGTTCCCTGAGCAGAAGGCCGGGGAGGTGATTAACCAGC AGAGTTCCCTGAGCAGAAGGCTGGGGAGGTGATTAACCAGC < 41bp 0.510943398418908 0.753352850303823 0.88832223 0.83509284 prediction 0.48481890376983 Functional Gain - VCL ENSG00000035403 CDS Human protein_coding chr10:75868838 chr10:75868839 synonymous SNV . 0 22 hm5C_associated_SNPs_110507 0 0 1 0 2 VCL chr10:75868914 5'GT 75868914 Upstream 76bp
chr12 53670563 53670563 1 + C A rs61760168 53670559 + 53670539 53670579 41 GCTGAGCCCCGAGGAGACACCAGCCGGGGCCTGGGCACGAG GCTGAGCCCCGAGGAGACACCAGCAGGGGCCTGGGCACGAG < 41bp 0.688583104735387 0.930975251727871 0.105265826 0.10305533 prediction 0.484784293984967 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53670559 chr12:53670563 synonymous SNV . 0 25 hm5C_associated_SNPs_110510 0 0 1 0 1 ESPL1 chr12:53670643 5'GT 53670643 Upstream 81bp
chr20 44571986 44571986 1 + C T LUSC 44571985 + 44571965 44572005 41 ACTCTGAAACGCAGGTTATCCCGAATCAAGTTCCGGGAGGA ACTCTGAAACGCAGGTTATCCTGAATCAAGTTCCGGGAGGA < 41bp 0.50935123490288 0.751738470913574 0.23147935 0.34514606 prediction 0.484774472021388 Functional Gain - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44571985 chr20:44571986 stopgain 1.000 1 22 hm5C_associated_SNPs_110511 0 0 0 0 2 PCIF1 chr20:44571979 3'AG 44571979 Downstream 8bp
chr20 44571986 44571986 1 + C T LUSC 44571985 + 44571965 44572005 41 ACTCTGAAACGCAGGTTATCCCGAATCAAGTTCCGGGAGGA ACTCTGAAACGCAGGTTATCCTGAATCAAGTTCCGGGAGGA < 41bp 0.50935123490288 0.751738470913574 0.23147935 0.34514606 prediction 0.484774472021388 Functional Gain - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44571985 chr20:44571986 stopgain 1.000 1 22 hm5C_associated_SNPs_110511 0 0 0 0 2 PCIF1 chr20:44572062 5'GT 44572062 Upstream 77bp
chr16 30532895 30532895 1 + A G UCEC 30532892 + 30532872 30532912 41 TGGAATCCCTGCAGAAGACTCTGAGCAGCTGGCATCTGGGC TGGAATCCCTGCAGAAGACTCTGGGCAGCTGGCATCTGGGC < 41bp 0.498769120907464 0.742377974021071 0.33723724 0.8295896 prediction 0.484755948042142 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30532892 chr16:30532895 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_110514 0 0 0 0 1 ITGAL chr16:30532813 3'AG 30532813 Downstream 83bp
chr11 2937892 2937892 1 + C A LGG 2937891 + 2937871 2937911 41 CTGGCTGCCCTGGCCACCCTCCTGGGAGCTGTCCTCAGCTT CTGGCTGCCCTGGCCACCCTCATGGGAGCTGTCCTCAGCTT < 41bp 0.551797521572123 0.794173005009528 0.26589248 0.91019595 prediction 0.484750966874809 Functional Gain - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2937891 chr11:2937892 nonsynonymous SNV 0.063 0 22 hm5C_associated_SNPs_110516 0 0 1 0 2 SLC22A18 chr11:2937852 3'AG 2937852 Downstream 41bp
chr11 2937892 2937892 1 + C A LGG 2937891 + 2937871 2937911 41 CTGGCTGCCCTGGCCACCCTCCTGGGAGCTGTCCTCAGCTT CTGGCTGCCCTGGCCACCCTCATGGGAGCTGTCCTCAGCTT < 41bp 0.551797521572123 0.794173005009528 0.26589248 0.91019595 prediction 0.484750966874809 Functional Gain - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2937891 chr11:2937892 nonsynonymous SNV 0.063 0 22 hm5C_associated_SNPs_110516 0 0 1 0 2 SLC22A18 chr11:2937970 5'GT 2937970 Upstream 79bp
chr2 71206441 71206441 1 + C A BLCA 71206440 + 71206420 71206460 41 TGGCTGCGATTCTGTCTGAACCAGAGCCTCAGGGAAATCCC TGGCTGCGATTCTGTCTGAACAAGAGCCTCAGGGAAATCCC < 41bp 0.556126019067287 0.798498738902373 0.8893478 0.3665902 prediction 0.484745439670172 Functional Gain - ANKRD53 ENSG00000144031 CDS Human protein_coding chr2:71206440 chr2:71206441 nonsynonymous SNV 0.076 0 22 hm5C_associated_SNPs_110517 0 0 0 0 1 ANKRD53 chr2:71206473 5'GT 71206473 Upstream 33bp
chr17 78225140 78225140 1 + C T rs80293861 78225139 + 78225119 78225159 41 GTCTCTCAGGTCCCCGTTCTCCGTGTCCTGCTGTCCGCTGA GTCTCTCAGGTCCCCGTTCTCTGTGTCCTGCTGTCCGCTGA < 41bp 0.499281641824993 0.742371719234331 0.8675138 0.6120007 prediction 0.484743438468662 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78225139 chr17:78225140 nonsynonymous SNV 0.145 3 22 hm5C_associated_SNPs_110518 0 0 0 0 2 SLC26A11 chr17:78225128 3'AG 78225128 Downstream 13bp
chr17 78225140 78225140 1 + C T rs80293861 78225139 + 78225119 78225159 41 GTCTCTCAGGTCCCCGTTCTCCGTGTCCTGCTGTCCGCTGA GTCTCTCAGGTCCCCGTTCTCTGTGTCCTGCTGTCCGCTGA < 41bp 0.499281641824993 0.742371719234331 0.8675138 0.6120007 prediction 0.484743438468662 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78225139 chr17:78225140 nonsynonymous SNV 0.145 3 22 hm5C_associated_SNPs_110518 0 0 0 0 2 SLC26A11 chr17:78225200 5'GT 78225200 Upstream 61bp
chr5 148679165 148679165 1 + T C UCEC 148679163 + 148679143 148679183 41 ACCCTGGAAAAGAAGATGGCCGTGGCCTCCATCCTGCAGAG ACCCTGGAAAAGAAGATGGCCGCGGCCTCCATCCTGCAGAG < 41bp 0.548902326177247 0.79127289402435 0.41260684 0.61467814 prediction 0.484741135694205 Functional Gain - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148679163 chr5:148679165 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_110520 0 0 0 0 2 AFAP1L1 chr5:148679072 3'AG 148679072 Downstream 94bp
chr5 148679165 148679165 1 + T C UCEC 148679163 + 148679143 148679183 41 ACCCTGGAAAAGAAGATGGCCGTGGCCTCCATCCTGCAGAG ACCCTGGAAAAGAAGATGGCCGCGGCCTCCATCCTGCAGAG < 41bp 0.548902326177247 0.79127289402435 0.41260684 0.61467814 prediction 0.484741135694205 Functional Gain - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148679163 chr5:148679165 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_110520 0 0 0 0 2 AFAP1L1 chr5:148679200 5'GT 148679200 Upstream 36bp
chr1 230391063 230391063 1 + C T STAD 230391062 + 230391042 230391082 41 AGCAGCACCCCTACACGTTCCCGGGTGGCAGTGGCACTGTC AGCAGCACCCCTACACGTTCCTGGGTGGCAGTGGCACTGTC < 41bp 0.519736731055323 0.762102062845697 0.8714858 0.6577535 prediction 0.484730663580746 Functional Gain - GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230391062 chr1:230391063 nonsynonymous SNV 0.871 4 22 hm5C_associated_SNPs_110523 0 0 1 1 2 GALNT2 chr1:230390964 3'AG 230390964 Downstream 100bp
chr1 230391063 230391063 1 + C T STAD 230391062 + 230391042 230391082 41 AGCAGCACCCCTACACGTTCCCGGGTGGCAGTGGCACTGTC AGCAGCACCCCTACACGTTCCTGGGTGGCAGTGGCACTGTC < 41bp 0.519736731055323 0.762102062845697 0.8714858 0.6577535 prediction 0.484730663580746 Functional Gain - GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230391062 chr1:230391063 nonsynonymous SNV 0.871 4 22 hm5C_associated_SNPs_110523 0 0 1 1 2 GALNT2 chr1:230391090 5'GT 230391090 Upstream 28bp
chr5 150867587 150867587 1 + C T SKCM 150867586 + 150867566 150867606 41 CCGCCTGGACCTGGTCATCTCCCTGGTGGGCTCCGTGAGCA CCGCCTGGACCTGGTCATCTCTCTGGTGGGCTCCGTGAGCA < 41bp 0.491561003678473 0.742363017142984 0.15693405 0.38015434 prediction 0.484726034285968 Functional Gain - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150867586 chr5:150867587 synonymous SNV . 0 22 hm5C_associated_SNPs_110526 0 0 1 0 1 SLC36A1 chr5:150867544 3'AG 150867544 Downstream 44bp
chr4 187115733 187115733 1 + C T SKCM 187115732 + 187115712 187115752 41 GCTCTGGGTCGGGCCAGTGCCCATGGTGGCCCTTTATAATG GCTCTGGGTCGGGCCAGTGCCTATGGTGGCCCTTTATAATG < 41bp 0.499447681447206 0.742362435055923 0.029778749 0.026236653 prediction 0.484724870111846 Functional Gain - CYP4V2 ENSG00000145476 CDS Human protein_coding chr4:187115732 chr4:187115733 synonymous SNV . 0 22 hm5C_associated_SNPs_110527 0 0 1 0 2 CYP4V2 chr4:187115654 3'AG 187115654 Downstream 80bp
chr4 187115733 187115733 1 + C T SKCM 187115732 + 187115712 187115752 41 GCTCTGGGTCGGGCCAGTGCCCATGGTGGCCCTTTATAATG GCTCTGGGTCGGGCCAGTGCCTATGGTGGCCCTTTATAATG < 41bp 0.499447681447206 0.742362435055923 0.029778749 0.026236653 prediction 0.484724870111846 Functional Gain - CYP4V2 ENSG00000145476 CDS Human protein_coding chr4:187115732 chr4:187115733 synonymous SNV . 0 22 hm5C_associated_SNPs_110527 0 0 1 0 2 CYP4V2 chr4:187115766 5'GT 187115766 Upstream 34bp
chr2 1544387 1544387 1 + C T SKCM 1544386 + 1544366 1544406 41 GACACGCACTGGCACTAAATCCACACTGCCCATCTCGGAGA GACACGCACTGGCACTAAATCTACACTGCCCATCTCGGAGA < 41bp 0.514362248300476 0.756722720002022 0.051210046 0.13910142 prediction 0.484720943403093 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1544386 chr2:1544387 synonymous SNV . 0 22 hm5C_associated_SNPs_110528 0 0 0 0 1 TPO chr2:1544366 3'AG 1544366 Downstream 22bp
chr2 47168856 47168856 1 + C G rs201805434 47168855 + 47168835 47168875 41 CGAGCGCAGCGTTCACCTTTCCGGACACCGGTGAGTAAGGG CGAGCGCAGCGTTCACCTTTCGGGACACCGGTGAGTAAGGG < 41bp 0.612375250416448 0.854721296193955 0.5052143 0.88661563 prediction 0.484692091555014 Functional Gain - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47168855 chr2:47168856 nonsynonymous SNV 0.463 0 22 hm5C_associated_SNPs_110530 0 0 1 0 1 TTC7A chr2:47168864 5'GT 47168864 Upstream 9bp
chr16 19058454 19058454 1 + T C HNSC 19058452 + 19058432 19058472 41 GGCAGCAGGAGTTTGCCATTCCTGATAACGTCCTGGGGATA GGCAGCAGGAGTTTGCCATTCCCGATAACGTCCTGGGGATA < 41bp 0.448328983564348 0.742343341743707 0.40664122 0.6291385 prediction 0.484686683487414 Functional Gain - TMC7 ENSG00000170537 CDS Human protein_coding chr16:19058452 chr16:19058454 synonymous SNV . 0 23 hm5C_associated_SNPs_110531 0 0 0 0 1 TMC7 chr16:19058385 3'AG 19058385 Downstream 70bp
chr10 75560160 75560160 1 + C G rs181929079 75560156 + 75560136 75560176 41 GGTGAGCGGAGGTTTTCCACCGCCCGAGGAGGAGACACACA GGTGAGCGGAGGTTTTCCACCGCCGGAGGAGGAGACACACA < 41bp 0.462993589277697 0.742329727665525 0.23876312 0.89418995 prediction 0.48465945533105 Functional Gain - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75560156 chr10:75560160 synonymous SNV . 0 25 hm5C_associated_SNPs_110534 0 0 1 0 1 ZSWIM8 chr10:75560230 5'GT 75560230 Upstream 71bp
chr21 47414120 47414120 1 + C T SKCM 47414119 + 47414099 47414139 41 GGTGATCAGGGAAGAGAAGGCCCCGTTGGTGTCCCTGGAGA GGTGATCAGGGAAGAGAAGGCTCCGTTGGTGTCCCTGGAGA < 41bp 0.505783612090959 0.748110127159462 0.3068859 0.34897643 prediction 0.484653030137006 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47414119 chr21:47414120 nonsynonymous SNV 0.130 1 22 hm5C_associated_SNPs_110535 0 0 1 0 1 COL6A1 chr21:47414143 5'GT 47414143 Upstream 24bp
chr16 2283125 2283125 1 + C T SKCM 2283124 + 2283104 2283144 41 GATGCCAAGGGCACCGTCATCCACGAAGTCCACGTCCAGAT GATGCCAAGGGCACCGTCATCTACGAAGTCCACGTCCAGAT < 41bp 0.485370734552354 0.742319972862486 0.33387637 0.4834684 prediction 0.484639945724973 Functional Gain - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2283124 chr16:2283125 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_110537 0 0 1 0 1 E4F1 chr16:2283184 5'GT 2283184 Upstream 60bp
chr1 11808583 11808583 1 + C A UCEC 11808582 + 11808562 11808602 41 TTTGGCGTGGGCATGGCCATCCTCAGCTTGCTGCTCAAGCC TTTGGCGTGGGCATGGCCATCATCAGCTTGCTGCTCAAGCC < 41bp 0.523758965956438 0.766071034846241 0.1453054 0.16559961 prediction 0.484624137779606 Functional Gain - AGTRAP ENSG00000177674 CDS Human protein_coding chr1:11808582 chr1:11808583 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_110538 0 0 1 0 2 AGTRAP chr1:11808646 5'GT 11808646 Upstream 64bp
chr1 11808583 11808583 1 + C A UCEC 11808582 + 11808562 11808602 41 TTTGGCGTGGGCATGGCCATCCTCAGCTTGCTGCTCAAGCC TTTGGCGTGGGCATGGCCATCATCAGCTTGCTGCTCAAGCC < 41bp 0.523758965956438 0.766071034846241 0.1453054 0.16559961 prediction 0.484624137779606 Functional Gain - AGTRAP ENSG00000177674 CDS Human protein_coding chr1:11808582 chr1:11808583 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_110538 0 0 1 0 2 AGTRAP chr1:11808667 5'GT 11808667 Upstream 85bp
chr7 75583370 75583370 1 + C T SKCM 75583369 + 75583349 75583389 41 CACCGTGTCCGAGGCGGTGGCCGAAGAAGTATCTCTTTTCA CACCGTGTCCGAGGCGGTGGCTGAAGAAGTATCTCTTTTCA < 41bp 0.508963769204822 0.751275139131063 0.37239575 0.36921763 prediction 0.484622739852481 Functional Gain - POR ENSG00000127948 CDS Human protein_coding chr7:75583369 chr7:75583370 synonymous SNV . 0 22 hm5C_associated_SNPs_110540 0 0 1 0 1 POR chr7:75583307 3'AG 75583307 Downstream 64bp
chr11 3829808 3829808 1 + C G rs191164612 3829807 + 3829787 3829827 41 GCCGTTCGCGCTCTGACCAGCCCGCAGAGCCAGCCCCCGAC GCCGTTCGCGCTCTGACCAGCGCGCAGAGCCAGCCCCCGAC < 41bp 0.468328475016662 0.742307048257661 0.36651167 0.7959355 prediction 0.484614096515323 Functional Gain - PGAP2 ENSG00000148985 UTR5 Human protein_coding chr11:3829807 chr11:3829808 . . 0 22 hm5C_associated_SNPs_110541 0 0 1 0 1 PGAP2 chr11:3829881 5'GT 3829881 Upstream 74bp
chr3 38182688 38182688 1 + C T SKCM 38182687 + 38182667 38182707 41 AAGAAAGAGTTCCCCAGCATCCTGAGGTTCATCACTGTCTG AAGAAAGAGTTCCCCAGCATCTTGAGGTTCATCACTGTCTG < 41bp 0.520063430282102 0.762364681109352 0.18272343 0.22754669 prediction 0.484602501654499 Functional Gain - MYD88 ENSG00000172936 CDS Human protein_coding chr3:38182687 chr3:38182688 synonymous SNV . 0 22 hm5C_associated_SNPs_110542 0 0 1 0 1 MYD88 chr3:38182623 3'AG 38182623 Downstream 66bp
chr19 16238834 16238834 1 + A G SKCM 16238831 + 16238811 16238851 41 ATGCGTGTGCCTCCCTCTCTCACAGCTGGCCCTCGACTATG ATGCGTGTGCCTCCCTCTCTCACGGCTGGCCCTCGACTATG < 41bp 0.522417698697595 0.764704608610035 0.31492501 0.84521955 prediction 0.484573819824881 Functional Gain - RAB8A ENSG00000167461 splicing Human protein_coding chr19:16238831 chr19:16238834 . 0.833 0 24 hm5C_associated_SNPs_110544 0 0 1 0 1 RAB8A chr19:16238901 5'GT 16238901 Upstream 68bp
chrX 19368154 19368154 1 + C T LGG 19368153 + 19368133 19368173 41 AGGATGATGCAGACTGTACGCCGAATGGAGTTGAAAGCAGA AGGATGATGCAGACTGTACGCTGAATGGAGTTGAAAGCAGA < 41bp 0.506516477547909 0.748797380860109 0.121599525 0.17139655 prediction 0.484561806624402 Functional Gain - PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19368153 chrX:19368154 stopgain 0.998 1 22 hm5C_associated_SNPs_110547 0 0 1 0 2 PDHA1 chrX:19368055 3'AG 19368055 Downstream 100bp
chrX 19368154 19368154 1 + C T LGG 19368153 + 19368133 19368173 41 AGGATGATGCAGACTGTACGCCGAATGGAGTTGAAAGCAGA AGGATGATGCAGACTGTACGCTGAATGGAGTTGAAAGCAGA < 41bp 0.506516477547909 0.748797380860109 0.121599525 0.17139655 prediction 0.484561806624402 Functional Gain - PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19368153 chrX:19368154 stopgain 0.998 1 22 hm5C_associated_SNPs_110547 0 0 1 0 2 PDHA1 chrX:19368228 5'GT 19368228 Upstream 75bp
chr10 71265993 71265993 1 + C T COAD 71265992 + 71265972 71266012 41 CCTCCTGGGCATCCTGCTTCCCCAGGTGGGCAGGCCGTGGG CCTCCTGGGCATCCTGCTTCCTCAGGTGGGCAGGCCGTGGG < 41bp 0.536507065795437 0.778786877284877 0.041752845 0.08035034 prediction 0.484559622978881 Functional Gain - TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71265992 chr10:71265993 synonymous SNV . 0 22 hm5C_associated_SNPs_110548 0 0 0 0 1 TSPAN15 chr10:71265996 5'GT 71265996 Upstream 4bp
chr1 6270330 6270330 1 + T G STAD 6270328 + 6270308 6270348 41 TTCAAGGAGCAGCTCTCTCACTTGGCCACCTTGCTGCCCAC TTCAAGGAGCAGCTCTCTCACTGGGCCACCTTGCTGCCCAC < 41bp 0.659487496808945 0.901761487021178 0.83898646 0.92825294 prediction 0.484547980424467 Functional Gain - RNF207 ENSG00000158286 CDS Human protein_coding chr1:6270328 chr1:6270330 nonsynonymous SNV 0.464 3 23 hm5C_associated_SNPs_110549 0 0 1 0 2 RNF207 chr1:6270283 3'AG 6270283 Downstream 48bp
chr1 6270330 6270330 1 + T G STAD 6270328 + 6270308 6270348 41 TTCAAGGAGCAGCTCTCTCACTTGGCCACCTTGCTGCCCAC TTCAAGGAGCAGCTCTCTCACTGGGCCACCTTGCTGCCCAC < 41bp 0.659487496808945 0.901761487021178 0.83898646 0.92825294 prediction 0.484547980424467 Functional Gain - RNF207 ENSG00000158286 CDS Human protein_coding chr1:6270328 chr1:6270330 nonsynonymous SNV 0.464 3 23 hm5C_associated_SNPs_110549 0 0 1 0 2 RNF207 chr1:6270355 5'GT 6270355 Upstream 26bp
chr11 1155547 1155547 1 + C A rs368282942 1155543 + 1155523 1155563 41 GCCTCCAACCCGGCGCACAACGGGCGGGTGTGCAGCACCTG GCCTCCAACCCGGCGCACAACGGGAGGGTGTGCAGCACCTG < 41bp 0.390754772718378 0.742271981573246 0.8794166 0.9261533 prediction 0.484543963146492 Functional Gain - MUC5AC ENSG00000215182 CDS Human protein_coding chr11:1155543 chr11:1155547 synonymous SNV . 0 25 hm5C_associated_SNPs_110550 0 0 0 0 1 MUC5AC chr11:1155524 3'AG 1155524 Downstream 24bp
chr12 125612780 125612780 1 + C G LUSC 125612779 + 125612759 125612799 41 GTATAAAGGGGAGATTCAGGCCCGGAACCTGGGCATGGCCG GTATAAAGGGGAGATTCAGGCGCGGAACCTGGGCATGGCCG < 41bp 0.427058001453614 0.742268733809796 0.2997421 0.68956923 prediction 0.484537467619591 Functional Gain - AACS ENSG00000081760 CDS Human protein_coding chr12:125612779 chr12:125612780 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_110553 0 0 0 0 2 AACS chr12:125612707 3'AG 125612707 Downstream 74bp
chr12 125612780 125612780 1 + C G LUSC 125612779 + 125612759 125612799 41 GTATAAAGGGGAGATTCAGGCCCGGAACCTGGGCATGGCCG GTATAAAGGGGAGATTCAGGCGCGGAACCTGGGCATGGCCG < 41bp 0.427058001453614 0.742268733809796 0.2997421 0.68956923 prediction 0.484537467619591 Functional Gain - AACS ENSG00000081760 CDS Human protein_coding chr12:125612779 chr12:125612780 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_110553 0 0 0 0 2 AACS chr12:125612820 5'GT 125612820 Upstream 41bp
chr16 23388543 23388543 1 + T C COAD 23388541 + 23388521 23388561 41 CAGAGAGAGACCTGCATTGGCATGTGCAAGGAGTCCTGCAA CAGAGAGAGACCTGCATTGGCACGTGCAAGGAGTCCTGCAA < 41bp 0.485608313928281 0.742264014507293 0.81248856 0.7888987 prediction 0.484528029014585 Functional Gain - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23388541 chr16:23388543 nonsynonymous SNV 0.631 0 23 hm5C_associated_SNPs_110554 0 0 0 0 2 SCNN1B chr16:23388486 3'AG 23388486 Downstream 58bp
chr16 23388543 23388543 1 + T C COAD 23388541 + 23388521 23388561 41 CAGAGAGAGACCTGCATTGGCATGTGCAAGGAGTCCTGCAA CAGAGAGAGACCTGCATTGGCACGTGCAAGGAGTCCTGCAA < 41bp 0.485608313928281 0.742264014507293 0.81248856 0.7888987 prediction 0.484528029014585 Functional Gain - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23388541 chr16:23388543 nonsynonymous SNV 0.631 0 23 hm5C_associated_SNPs_110554 0 0 0 0 2 SCNN1B chr16:23388561 5'GT 23388561 Upstream 19bp
chr15 23259888 23259888 1 + T A rs530348238 23259884 + 23259864 23259904 41 AGAGTTAGAGAGTGTTCTCTCTGATGTCATGGCCACACAGA AGAGTTAGAGAGTGTTCTCTCTGAAGTCATGGCCACACAGA < 41bp 0.629004842224511 0.871250633245954 0.08873665 0.053628176 prediction 0.484491582042886 Functional Gain - GOLGA8IP ENSG00000153666 CDS Human other chr15:23259884 chr15:23259888 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_110559 0 0 0 0 2 GOLGA8IP chr15:23259812 3'AG 23259812 Downstream 77bp
chr15 23259888 23259888 1 + T A rs530348238 23259884 + 23259864 23259904 41 AGAGTTAGAGAGTGTTCTCTCTGATGTCATGGCCACACAGA AGAGTTAGAGAGTGTTCTCTCTGAAGTCATGGCCACACAGA < 41bp 0.629004842224511 0.871250633245954 0.08873665 0.053628176 prediction 0.484491582042886 Functional Gain - GOLGA8IP ENSG00000153666 CDS Human other chr15:23259884 chr15:23259888 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_110559 0 0 0 0 2 GOLGA8IP chr15:23259921 5'GT 23259921 Upstream 34bp
chr1 243433537 243433537 1 + C A THCA 243433536 + 243433516 243433556 41 GGACGCCAGGACAGCCTGGCCCGAATTACAACAGAGCCATG GGACGCCAGGACAGCCTGGCCAGAATTACAACAGAGCCATG < 41bp 0.529713373917944 0.771941399620007 0.082868844 0.3552804 prediction 0.484456051404127 Functional Gain - SDCCAG8 ENSG00000054282 CDS Human protein_coding chr1:243433536 chr1:243433537 synonymous SNV . 0 22 hm5C_associated_SNPs_110565 0 0 1 0 1 SDCCAG8 chr1:243433559 5'GT 243433559 Upstream 23bp
chrX 69460008 69460008 1 + C A LUSC 69460007 + 69459987 69460027 41 TGGGGAGCCTCTGCCACTGCCCCAAATTGAAAAGCCAAGCC TGGGGAGCCTCTGCCACTGCCACAAATTGAAAAGCCAAGCC < 41bp 0.526447325109147 0.768670529662725 0.46063632 0.86730593 prediction 0.484446409107157 Functional Gain - AWAT1 ENSG00000204195 CDS Human protein_coding chrX:69460007 chrX:69460008 synonymous SNV . 0 22 hm5C_associated_SNPs_110566 0 0 0 0 1 AWAT1 chrX:69459986 3'AG 69459986 Downstream 23bp
chr10 5777484 5777484 1 + C A LIHC 5777483 + 5777463 5777503 41 AGTAAAAGGCAATGAGAACCCCAGAAACAGAAAGCAGCTAC AGTAAAAGGCAATGAGAACCCAAGAAACAGAAAGCAGCTAC < 41bp 0.498858818816584 0.742208755705539 0.19862854 0.14293882 prediction 0.484417511411079 Functional Gain - FAM208B ENSG00000108021 CDS Human protein_coding chr10:5777483 chr10:5777484 synonymous SNV . 0 22 hm5C_associated_SNPs_110567 0 0 1 0 1 FAM208B chr10:5777509 5'GT 5777509 Upstream 26bp
chr15 48413351 48413351 1 + C A LUSC 48413350 + 48413330 48413370 41 CCTCCCTGCCCCAACGTCTCCCAAGGGCCACAGGTAGGTGG CCTCCCTGCCCCAACGTCTCCAAAGGGCCACAGGTAGGTGG < 41bp 0.487889486484278 0.742208135893618 0.19526282 0.35205358 prediction 0.484416271787236 Functional Gain - SLC24A5 ENSG00000188467 CDS Human protein_coding chr15:48413350 chr15:48413351 nonsynonymous SNV 0.982 1 22 hm5C_associated_SNPs_110568 0 0 0 0 1 SLC24A5 chr15:48413362 5'GT 48413362 Upstream 12bp
chr16 2129566 2129566 1 + C T SKCM 2129565 + 2129545 2129585 41 ATTCTCTTCTCAGCTCCAGCCCCGGGGTGCATGTGAGACAG ATTCTCTTCTCAGCTCCAGCCTCGGGGTGCATGTGAGACAG < 41bp 0.508688380714421 0.750892309372151 0.6957909 0.70039064 prediction 0.48440785731546 Functional Gain - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2129565 chr16:2129566 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_110569 1 0 0 0 1 TSC2 chr16:2129558 3'AG 2129558 Downstream 9bp
chr12 52309931 52309931 1 + C A HNSC 52309927 + 52309907 52309947 41 AGGTGCTGGACGAGCAGATCCGCACGGACTGCTTTGAGTCC AGGTGCTGGACGAGCAGATCCGCAAGGACTGCTTTGAGTCC < 41bp 0.310777079487091 0.742203368566855 0.33965206 0.5222986 prediction 0.48440673713371 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309927 chr12:52309931 nonsynonymous SNV 0.221 2 25 hm5C_associated_SNPs_110570 0 0 0 0 1 ACVRL1 chr12:52310017 5'GT 52310017 Upstream 87bp
chr19 33647411 33647411 1 + T C STAD 33647409 + 33647389 33647429 41 GTGTGACTCTGATGCAGGGCCATGAAGGTTCTGTCAGTTCC GTGTGACTCTGATGCAGGGCCACGAAGGTTCTGTCAGTTCC < 41bp 0.451846997015931 0.742200803435049 0.09634656 0.035564452 prediction 0.484401606870099 Functional Gain - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33647409 chr19:33647411 synonymous SNV . 0 23 hm5C_associated_SNPs_110571 0 0 0 0 1 WDR88 chr19:33647448 5'GT 33647448 Upstream 38bp
chr16 56913017 56913017 1 + C T SKCM 56913016 + 56912996 56913036 41 GTGCGTGATGCCTCTGGGGTCCTGAATGACACAGTGACCCC GTGCGTGATGCCTCTGGGGTCTTGAATGACACAGTGACCCC < 41bp 0.505578477453768 0.747773929583543 0.25110465 0.29850444 prediction 0.484390904259549 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56913016 chr16:56913017 synonymous SNV . 0 22 hm5C_associated_SNPs_110573 0 0 0 0 1 SLC12A3 chr16:56912985 3'AG 56912985 Downstream 33bp
chr12 1748863 1748863 1 + C A LUSC 1748862 + 1748842 1748882 41 TTCTGCAGGCAGCCGAGAGACCGCCTTCACCCACGCGGTGA TTCTGCAGGCAGCCGAGAGACAGCCTTCACCCACGCGGTGA < 41bp 0.532178592711916 0.774368088719728 0.1762853 0.2078338 prediction 0.484378992015624 Functional Gain - WNT5B ENSG00000111186 CDS Human protein_coding chr12:1748862 chr12:1748863 synonymous SNV . 0 22 hm5C_associated_SNPs_110574 0 0 0 0 1 WNT5B chr12:1748850 3'AG 1748850 Downstream 14bp
chr13 114537713 114537713 1 + C A rs117482263 114537712 + 114537692 114537732 41 TGTCCCGCCGTGGGATCACACCGCGATTGCTCAAACCACAC TGTCCCGCCGTGGGATCACACAGCGATTGCTCAAACCACAC < 41bp 0.506558766066598 0.74874498275482 0.81822395 0.9033967 prediction 0.484372433376445 Functional Gain - GAS6-AS1 ENSG00000233695 ncRNA_exonic Human antisense chr13:114537712 chr13:114537713 . . 0 22 hm5C_associated_SNPs_110575 0 0 0 0 2 GAS6-AS1 chr13:114537657 3'AG 114537657 Downstream 57bp
chr13 114537713 114537713 1 + C A rs117482263 114537712 + 114537692 114537732 41 TGTCCCGCCGTGGGATCACACCGCGATTGCTCAAACCACAC TGTCCCGCCGTGGGATCACACAGCGATTGCTCAAACCACAC < 41bp 0.506558766066598 0.74874498275482 0.81822395 0.9033967 prediction 0.484372433376445 Functional Gain - GAS6-AS1 ENSG00000233695 ncRNA_exonic Human antisense chr13:114537712 chr13:114537713 . . 0 22 hm5C_associated_SNPs_110575 0 0 0 0 2 GAS6-AS1 chr13:114537737 5'GT 114537737 Upstream 25bp
chr4 86915782 86915782 1 + T C HNSC 86915780 + 86915760 86915800 41 TGTCAGTGATGATTAGCAAACATGATTGCCTCTTTCCCAAA TGTCAGTGATGATTAGCAAACACGATTGCCTCTTTCCCAAA < 41bp 0.579836595509963 0.822008117045466 0.12110171 0.104629815 prediction 0.484343043071007 Functional Gain - ARHGAP24 ENSG00000138639 CDS Human protein_coding chr4:86915780 chr4:86915782 synonymous SNV . 0 23 hm5C_associated_SNPs_110577 0 0 0 0 1 ARHGAP24 chr4:86915736 3'AG 86915736 Downstream 47bp
chr5 139740898 139740898 1 + C A READ 139740894 + 139740874 139740914 41 CTGAGAGGGCAGTTGCAGGCCTTGCTGCTGCAGAGACCCCA CTGAGAGGGCAGTTGCAGGCCTTGATGCTGCAGAGACCCCA < 41bp 0.316946649818957 0.742166370449153 0.05398038 0.078939766 prediction 0.484332740898306 Functional Gain - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139740894 chr5:139740898 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_110578 0 0 0 0 2 SLC4A9 chr5:139740839 3'AG 139740839 Downstream 60bp
chr5 139740898 139740898 1 + C A READ 139740894 + 139740874 139740914 41 CTGAGAGGGCAGTTGCAGGCCTTGCTGCTGCAGAGACCCCA CTGAGAGGGCAGTTGCAGGCCTTGATGCTGCAGAGACCCCA < 41bp 0.316946649818957 0.742166370449153 0.05398038 0.078939766 prediction 0.484332740898306 Functional Gain - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139740894 chr5:139740898 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_110578 0 0 0 0 2 SLC4A9 chr5:139740952 5'GT 139740952 Upstream 55bp
chr20 21687102 21687102 1 + C A ESCA 21687098 + 21687078 21687118 41 CAGACGTATGGCGAGGTGAACCAGCTGGGCGGTGTGTTCGT CAGACGTATGGCGAGGTGAACCAGATGGGCGGTGTGTTCGT < 41bp 0.336560353199936 0.742158347706402 0.81660634 0.87603194 prediction 0.484316695412804 Functional Gain - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21687098 chr20:21687102 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_110580 0 0 0 0 1 PAX1 chr20:21687076 3'AG 21687076 Downstream 27bp
chrX 118604446 118604446 1 + C T UCEC 118604445 + 118604425 118604465 41 CCATTTGACACTGTTCGCCGCCGCATGATGATGCAGTCAGG CCATTTGACACTGTTCGCCGCTGCATGATGATGCAGTCAGG < 41bp 0.49085979218018 0.742145962102979 0.06199357 0.055663437 prediction 0.484291924205957 Functional Gain - SLC25A5 ENSG00000005022 CDS Human protein_coding chrX:118604445 chrX:118604446 nonsynonymous SNV 0.053 4 22 hm5C_associated_SNPs_110583 0 0 1 0 1 SLC25A5 chrX:118604476 5'GT 118604476 Upstream 31bp
chr14 57085396 57085396 1 + C A LUAD 57085395 + 57085375 57085415 41 GCAGTTGTGTCTGAGACTAACCGAGTGCTGAATAGCAATGG GCAGTTGTGTCTGAGACTAACAGAGTGCTGAATAGCAATGG < 41bp 0.530629870418488 0.772772745635808 0.4257994 0.82989407 prediction 0.48428575043464 Functional Gain - TMEM260 ENSG00000070269 CDS Human protein_coding chr14:57085395 chr14:57085396 synonymous SNV . 0 22 hm5C_associated_SNPs_110584 0 0 1 0 2 TMEM260 chr14:57085312 3'AG 57085312 Downstream 85bp
chr14 57085396 57085396 1 + C A LUAD 57085395 + 57085375 57085415 41 GCAGTTGTGTCTGAGACTAACCGAGTGCTGAATAGCAATGG GCAGTTGTGTCTGAGACTAACAGAGTGCTGAATAGCAATGG < 41bp 0.530629870418488 0.772772745635808 0.4257994 0.82989407 prediction 0.48428575043464 Functional Gain - TMEM260 ENSG00000070269 CDS Human protein_coding chr14:57085395 chr14:57085396 synonymous SNV . 0 22 hm5C_associated_SNPs_110584 0 0 1 0 2 TMEM260 chr14:57085481 5'GT 57085481 Upstream 86bp
chr1 70541814 70541814 1 + C A LUAD 70541810 + 70541790 70541830 41 TCCCAAAGCCTTCAGCATCGCAGCCGGGAGCAGCAGCCGTA TCCCAAAGCCTTCAGCATCGCAGCAGGGAGCAGCAGCCGTA < 41bp 0.34863930623497 0.742139043170967 0.36268395 0.46937254 prediction 0.484278086341933 Functional Gain - LRRC7 ENSG00000033122 CDS Human protein_coding chr1:70541810 chr1:70541814 synonymous SNV . 0 25 hm5C_associated_SNPs_110586 0 0 0 0 1 LRRC7 chr1:70541760 3'AG 70541760 Downstream 55bp
chr1 31191784 31191784 1 - G T LUAD 31191788 - 31191768 31191808 41 GCAGGTGGTCATCGTGGTGACAGACGGGAGGCCCCAGGACA GCAGGTGGTCATCGTGGTGACAGAAGGGAGGCCCCAGGACA < 41bp 0.636380716958893 0.878511480563124 0.68657565 0.8946258 prediction 0.48426152720846 Functional Gain - MATN1 ENSG00000162510 CDS Human protein_coding chr1:31191788 chr1:31191784 nonsynonymous SNV 0.965 4 25 hm5C_associated_SNPs_110587 0 0 0 0 1 MATN1 chr1:31191804 3'AG 31191804 Downstream 21bp
chr1 22973789 22973789 1 + C A UCEC 22973788 + 22973768 22973808 41 AACCCGGCTTACCCGGCCATCCTGGGAAAAATGGCCCCATG AACCCGGCTTACCCGGCCATCATGGGAAAAATGGCCCCATG < 41bp 0.547901541279234 0.790031409846736 0.88608813 0.90500426 prediction 0.484259737135004 Functional Gain - C1QC ENSG00000159189 CDS Human protein_coding chr1:22973788 chr1:22973789 nonsynonymous SNV 0.801 4 22 hm5C_associated_SNPs_110588 0 0 0 0 1 C1QC chr1:22973720 3'AG 22973720 Downstream 70bp
chr18 32455306 32455306 1 + C A LUSC 32455302 + 32455282 32455322 41 CAGCCTGCTCCACCCCGACGCACACGCCGCAGGACTCCCTC CAGCCTGCTCCACCCCGACGCACAAGCCGCAGGACTCCCTC < 41bp 0.387756246761613 0.742128579926425 0.015940964 0.03961605 prediction 0.48425715985285 Functional Gain - DTNA ENSG00000134769 CDS Human protein_coding chr18:32455302 chr18:32455306 nonsynonymous SNV 0.031 1 25 hm5C_associated_SNPs_110589 0 0 0 0 1 DTNA chr18:32455362 5'GT 32455362 Upstream 57bp
chr7 138487740 138487740 1 + C A UCEC 138487739 + 138487719 138487759 41 GTTGGCTGGAGCCTCTGGTTCCTCACCCTCATCCTGCTCTG GTTGGCTGGAGCCTCTGGTTCATCACCCTCATCCTGCTCTG < 41bp 0.499813903241513 0.742117146732222 0.06385031 0.08436078 prediction 0.484234293464444 Functional Gain - TMEM213 ENSG00000214128 CDS Human protein_coding chr7:138487739 chr7:138487740 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_110590 0 0 0 0 1 TMEM213 chr7:138487645 3'AG 138487645 Downstream 96bp
chr1 1421550 1421550 1 + C T READ 1421549 + 1421529 1421569 41 ACCAGGAACACCAAGAAGAACCGGGGCCTGTACAGGCACAT ACCAGGAACACCAAGAAGAACTGGGGCCTGTACAGGCACAT < 41bp 0.507920687049362 0.750032821440056 0.721041 0.75623834 prediction 0.484224268781388 Functional Gain - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1421549 chr1:1421550 nonsynonymous SNV 0.013 3 22 hm5C_associated_SNPs_110591 0 0 1 0 2 ATAD3B chr1:1421490 3'AG 1421490 Downstream 61bp
chr1 1421550 1421550 1 + C T READ 1421549 + 1421529 1421569 41 ACCAGGAACACCAAGAAGAACCGGGGCCTGTACAGGCACAT ACCAGGAACACCAAGAAGAACTGGGGCCTGTACAGGCACAT < 41bp 0.507920687049362 0.750032821440056 0.721041 0.75623834 prediction 0.484224268781388 Functional Gain - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1421549 chr1:1421550 nonsynonymous SNV 0.013 3 22 hm5C_associated_SNPs_110591 0 0 1 0 2 ATAD3B chr1:1421615 5'GT 1421615 Upstream 66bp
chr5 176731056 176731056 1 + C A KIRC 176731052 + 176731032 176731072 41 GACCAAGTGTTCGCCGCCTTCTGGCAGCGGTACCCGAATCC GACCAAGTGTTCGCCGCCTTCTGGAAGCGGTACCCGAATCC < 41bp 0.684781971557652 0.926887716403922 0.20064157 0.69956636 prediction 0.484211489692541 Functional Gain - PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176731052 chr5:176731056 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_110594 0 0 1 0 1 PRELID1 chr5:176731078 5'GT 176731078 Upstream 23bp
chr10 118215322 118215322 1 + C A SKCM 118215321 + 118215301 118215341 41 GGGAAGCTGGGTCAAGGATACCAGGCCTTGGAAGAATAACT GGGAAGCTGGGTCAAGGATACAAGGCCTTGGAAGAATAACT < 41bp 0.4854980278077 0.742101063719269 0.39516583 0.35884303 prediction 0.484202127438538 Functional Gain - PNLIPRP3 ENSG00000203837 CDS Human protein_coding chr10:118215321 chr10:118215322 nonsynonymous SNV 0.866 1 22 hm5C_associated_SNPs_110595 0 0 0 0 2 PNLIPRP3 chr10:118215234 3'AG 118215234 Downstream 89bp
chr10 118215322 118215322 1 + C A SKCM 118215321 + 118215301 118215341 41 GGGAAGCTGGGTCAAGGATACCAGGCCTTGGAAGAATAACT GGGAAGCTGGGTCAAGGATACAAGGCCTTGGAAGAATAACT < 41bp 0.4854980278077 0.742101063719269 0.39516583 0.35884303 prediction 0.484202127438538 Functional Gain - PNLIPRP3 ENSG00000203837 CDS Human protein_coding chr10:118215321 chr10:118215322 nonsynonymous SNV 0.866 1 22 hm5C_associated_SNPs_110595 0 0 0 0 2 PNLIPRP3 chr10:118215342 5'GT 118215342 Upstream 21bp
chr21 42811675 42811675 1 + T G LUSC 42811673 + 42811653 42811693 41 ATCAGTCATGAGCTAATCACCCTGGAGATCAGCTCCCGAGA ATCAGTCATGAGCTAATCACCCGGGAGATCAGCTCCCGAGA < 41bp 0.380737083773164 0.742089530333419 0.105092704 0.9159517 prediction 0.484179060666837 Functional Gain - MX1 ENSG00000157601 CDS Human protein_coding chr21:42811673 chr21:42811675 nonsynonymous SNV 0.980 5 23 hm5C_associated_SNPs_110598 0 0 0 0 1 MX1 chr21:42811621 3'AG 42811621 Downstream 55bp
chr16 31499479 31499479 1 + C T LIHC 31499478 + 31499458 31499498 41 GTCATGCCAGGCATGATCAGCCGCATTCTGTACCCAGGTAA GTCATGCCAGGCATGATCAGCTGCATTCTGTACCCAGGTAA < 41bp 0.486139100233835 0.74207784055691 0.25368595 0.23210743 prediction 0.484155681113819 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31499478 chr16:31499479 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_110599 0 0 0 0 1 SLC5A2 chr16:31499494 5'GT 31499494 Upstream 16bp
chr19 48202003 48202003 1 + C G CESC 48202002 + 48201982 48202022 41 CTCCTGCCCTACCATGTCTACCAGGGCGCCCTCCCCTCCCC CTCCTGCCCTACCATGTCTACGAGGGCGCCCTCCCCTCCCC < 41bp 0.412217316275149 0.7420775061293 0.88412434 0.922292 prediction 0.4841550122586 Functional Gain - BICRA ENSG00000063169 CDS Human protein_coding chr19:48202002 chr19:48202003 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_110600 0 0 1 0 1 BICRA chr19:48202039 5'GT 48202039 Upstream 37bp
chr19 14139137 14139137 1 + C G rs146486931 14139133 + 14139113 14139153 41 AGGCTTTGCGGCCGAGAATTCATCCGAGCAGTCATCTTCAC AGGCTTTGCGGCCGAGAATTCATCGGAGCAGTCATCTTCAC < 41bp 0.457515308356903 0.742074222674888 0.85417545 0.8598716 prediction 0.484148445349776 Functional Gain - RLN3 ENSG00000171136 CDS Human protein_coding chr19:14139133 chr19:14139137 nonsynonymous SNV 0.986 5 25 hm5C_associated_SNPs_110601 0 0 0 0 1 RLN3 chr19:14139206 5'GT 14139206 Upstream 70bp
chr14 45535808 45535808 1 + C T LIHC 45535807 + 45535787 45535827 41 AACTGAAGTTCGTGAAGTCACCAGAAAATCAGTCCCTCGTA AACTGAAGTTCGTGAAGTCACTAGAAAATCAGTCCCTCGTA < 41bp 0.502121605117105 0.744192825075932 0.48627204 0.23450693 prediction 0.484142439917655 Functional Gain - TOGARAM1 ENSG00000198718 CDS Human protein_coding chr14:45535807 chr14:45535808 synonymous SNV . 0 22 hm5C_associated_SNPs_110603 0 0 0 0 1 TOGARAM1 chr14:45535781 3'AG 45535781 Downstream 28bp
chr7 31124410 31124410 1 + T A HNSC 31124406 + 31124386 31124426 41 CGGTTGGCTACAGCACATCCCTCGTCACCCTCACCACTGCC CGGTTGGCTACAGCACATCCCTCGACACCCTCACCACTGCC < 41bp 0.391335204047634 0.742068938773998 0.05899501 0.6263459 prediction 0.484137877547996 Functional Gain - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31124406 chr7:31124410 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_110604 0 0 0 0 2 ADCYAP1R1 chr7:31124352 3'AG 31124352 Downstream 59bp
chr7 31124410 31124410 1 + T A HNSC 31124406 + 31124386 31124426 41 CGGTTGGCTACAGCACATCCCTCGTCACCCTCACCACTGCC CGGTTGGCTACAGCACATCCCTCGACACCCTCACCACTGCC < 41bp 0.391335204047634 0.742068938773998 0.05899501 0.6263459 prediction 0.484137877547996 Functional Gain - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31124406 chr7:31124410 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_110604 0 0 0 0 2 ADCYAP1R1 chr7:31124449 5'GT 31124449 Upstream 40bp
chr1 116933447 116933447 1 + C T SKCM 116933446 + 116933426 116933466 41 AGCTACCTGGCTTGCTCTGTCCAGAATTGCAGGTCTTTGTA AGCTACCTGGCTTGCTCTGTCTAGAATTGCAGGTCTTTGTA < 41bp 0.550372848828292 0.792440271864235 0.5164566 0.3669585 prediction 0.484134846071885 Functional Gain - ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116933446 chr1:116933447 synonymous SNV . 0 22 hm5C_associated_SNPs_110605 0 0 1 0 2 ATP1A1 chr1:116933404 3'AG 116933404 Downstream 44bp
chr1 116933447 116933447 1 + C T SKCM 116933446 + 116933426 116933466 41 AGCTACCTGGCTTGCTCTGTCCAGAATTGCAGGTCTTTGTA AGCTACCTGGCTTGCTCTGTCTAGAATTGCAGGTCTTTGTA < 41bp 0.550372848828292 0.792440271864235 0.5164566 0.3669585 prediction 0.484134846071885 Functional Gain - ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116933446 chr1:116933447 synonymous SNV . 0 22 hm5C_associated_SNPs_110605 0 0 1 0 2 ATP1A1 chr1:116933513 5'GT 116933513 Upstream 67bp
chr7 99204388 99204388 1 + C G rs182148364 99204384 + 99204364 99204404 41 CCTGCAGTTTACATCATCCTCGGCCGGGTTTTCCTGCTCTC CCTGCAGTTTACATCATCCTCGGCGGGGTTTTCCTGCTCTC < 41bp 0.604472513203578 0.846530326065841 0.41043362 0.78022754 prediction 0.484115625724526 Functional Gain - TMEM225B ENSG00000244219 ncRNA_exonic Human protein_coding chr7:99204384 chr7:99204388 . . 0 25 hm5C_associated_SNPs_110609 0 0 0 0 1 TMEM225B chr7:99204371 3'AG 99204371 Downstream 18bp
chr6 44329600 44329600 1 + C T BLCA 44329599 + 44329579 44329619 41 CGTCCTGAGTGGACATTTTACCCAAGGTTTAGCAGCAACAT CGTCCTGAGTGGACATTTTACTCAAGGTTTAGCAGCAACAT < 41bp 0.541326462099841 0.783375696284517 0.11489588 0.051662773 prediction 0.484098468369352 Functional Gain - SPATS1 ENSG00000249481 CDS Human protein_coding chr6:44329599 chr6:44329600 nonsynonymous SNV 0.943 4 22 hm5C_associated_SNPs_110612 0 0 0 0 1 SPATS1 chr6:44329568 3'AG 44329568 Downstream 33bp
chr1 201970811 201970811 1 + C T SKCM 201970810 + 201970790 201970830 41 TATGTGCATGAATTCAAATTCCGAAGCATCTTAGCCGATGA TATGTGCATGAATTCAAATTCTGAAGCATCTTAGCCGATGA < 41bp 0.487322320732604 0.74203488569233 0.2919008 0.27664495 prediction 0.484069771384661 Functional Gain - RNPEP ENSG00000176393 CDS Human protein_coding chr1:201970810 chr1:201970811 stopgain 0.942 0 22 hm5C_associated_SNPs_110616 0 0 1 0 2 RNPEP chr1:201970787 3'AG 201970787 Downstream 25bp
chr1 201970811 201970811 1 + C T SKCM 201970810 + 201970790 201970830 41 TATGTGCATGAATTCAAATTCCGAAGCATCTTAGCCGATGA TATGTGCATGAATTCAAATTCTGAAGCATCTTAGCCGATGA < 41bp 0.487322320732604 0.74203488569233 0.2919008 0.27664495 prediction 0.484069771384661 Functional Gain - RNPEP ENSG00000176393 CDS Human protein_coding chr1:201970810 chr1:201970811 stopgain 0.942 0 22 hm5C_associated_SNPs_110616 0 0 1 0 2 RNPEP chr1:201970895 5'GT 201970895 Upstream 85bp
chr4 1807787 1807787 1 + A G KIRP 1807784 + 1807764 1807804 41 CACCCCTTCCCCAGTGCATCCACAGGGACCTGGCTGCCCGC CACCCCTTCCCCAGTGCATCCACGGGGACCTGGCTGCCCGC < 41bp 0.506239370562275 0.748272961493932 0.12149185 0.76531124 prediction 0.484067181863315 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1807784 chr4:1807787 nonsynonymous SNV 0.940 5 24 hm5C_associated_SNPs_110617 0 0 1 0 1 FGFR3 chr4:1807778 3'AG 1807778 Downstream 10bp
chr8 30601740 30601740 1 + C A COAD 30601736 + 30601716 30601756 41 CGTGGGGTTGTTGGCATTTTCTTCCTCTCTGCTGTCCCCCT CGTGGGGTTGTTGGCATTTTCTTCATCTCTGCTGTCCCCCT < 41bp 0.363514397175611 0.742033003825309 0.28258383 0.30699432 prediction 0.484066007650619 Functional Gain - UBXN8 ENSG00000104691 ncRNA_exonic Human protein_coding chr8:30601736 chr8:30601740 . 0.838 2 25 hm5C_associated_SNPs_110618 0 0 1 0 1 UBXN8 chr8:30601794 5'GT 30601794 Upstream 55bp
chr15 101592102 101592102 1 + C T GBM 101592101 + 101592081 101592121 41 TCATCTCCTGCCCCAGACACCCGGACCTCCCCGTGCCGCTG TCATCTCCTGCCCCAGACACCTGGACCTCCCCGTGCCGCTG < 41bp 0.522255911429924 0.764279225451646 0.8862334 0.84310496 prediction 0.484046628043445 Functional Gain - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101592101 chr15:101592102 nonsynonymous SNV 0.863 1 22 hm5C_associated_SNPs_110622 0 0 0 0 1 LRRK1 chr15:101592165 5'GT 101592165 Upstream 64bp
chr11 125780320 125780320 1 + T A LUAD 125780316 + 125780296 125780336 41 AAACTGGCCGTGTGGTTGAGCAGATGGGAAAATTCTGTGTG AAACTGGCCGTGTGGTTGAGCAGAAGGGAAAATTCTGTGTG < 41bp 0.619127994625127 0.861150919009017 0.40016836 0.30148697 prediction 0.48404584876778 Functional Gain - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125780316 chr11:125780320 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_110623 0 0 1 0 2 DDX25 chr11:125780259 3'AG 125780259 Downstream 62bp
chr11 125780320 125780320 1 + T A LUAD 125780316 + 125780296 125780336 41 AAACTGGCCGTGTGGTTGAGCAGATGGGAAAATTCTGTGTG AAACTGGCCGTGTGGTTGAGCAGAAGGGAAAATTCTGTGTG < 41bp 0.619127994625127 0.861150919009017 0.40016836 0.30148697 prediction 0.48404584876778 Functional Gain - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125780316 chr11:125780320 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_110623 0 0 1 0 2 DDX25 chr11:125780373 5'GT 125780373 Upstream 54bp
chr7 34867158 34867158 1 + C A LUAD 34867157 + 34867137 34867177 41 GCCTGACGACTCCTACTGGACCCCATACATGACCATCGTGG GCCTGACGACTCCTACTGGACACCATACATGACCATCGTGG < 41bp 0.516279184560809 0.758300194714786 0.036028624 0.023045093 prediction 0.484042020307953 Functional Gain - NPSR1 ENSG00000187258 CDS Human protein_coding chr7:34867157 chr7:34867158 synonymous SNV . 0 22 hm5C_associated_SNPs_110624 0 0 0 0 1 NPSR1 chr7:34867214 5'GT 34867214 Upstream 57bp
chr7 129091522 129091522 1 + C T SKCM 129091521 + 129091501 129091541 41 TATATAATGGGACTCTTGGACCGGCTAGAGGTGGTCAGTAG TATATAATGGGACTCTTGGACTGGCTAGAGGTGGTCAGTAG < 41bp 0.50002505179243 0.742043204361463 0.24334377 0.20185262 prediction 0.484036305138066 Functional Gain - STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129091521 chr7:129091522 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_110626 0 0 1 0 2 STRIP2 chr7:129091454 3'AG 129091454 Downstream 69bp
chr7 129091522 129091522 1 + C T SKCM 129091521 + 129091501 129091541 41 TATATAATGGGACTCTTGGACCGGCTAGAGGTGGTCAGTAG TATATAATGGGACTCTTGGACTGGCTAGAGGTGGTCAGTAG < 41bp 0.50002505179243 0.742043204361463 0.24334377 0.20185262 prediction 0.484036305138066 Functional Gain - STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129091521 chr7:129091522 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_110626 0 0 1 0 2 STRIP2 chr7:129091588 5'GT 129091588 Upstream 67bp
chr16 31131695 31131695 1 + C T LUSC 31131694 + 31131674 31131714 41 GACGAGTGGGTAGACAAGAACCGGCTGGCGCTGACCAAGAC GACGAGTGGGTAGACAAGAACTGGCTGGCGCTGACCAAGAC < 41bp 0.524724429524386 0.766719289965625 0.71782637 0.61644965 prediction 0.483989720882478 Functional Gain - KAT8 ENSG00000103510 CDS Human protein_coding chr16:31131694 chr16:31131695 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_110631 0 0 1 0 1 KAT8 chr16:31131660 3'AG 31131660 Downstream 36bp
chrX 155233487 155233487 1 + C T LIHC 155233486 + 155233466 155233506 41 TCTGGGAGGGAGCAGGTCAGCCTGGTGGACCCGGAGTACCT TCTGGGAGGGAGCAGGTCAGCTTGGTGGACCCGGAGTACCT < 41bp 0.51194663671602 0.753937112644318 0.50772417 0.45575106 prediction 0.483980951856596 Functional Gain - IL9R ENSG00000124334 CDS Human protein_coding chrX:155233486 chrX:155233487 synonymous SNV . 0 22 hm5C_associated_SNPs_110632 0 0 0 0 1 IL9R chrX:155233520 5'GT 155233520 Upstream 34bp
chr7 39379547 39379547 1 + C T ESCA 39379546 + 39379526 39379566 41 CCCAGCAGAGCTCCAGCCCCCCGCAGAAACCTAGTCAGTCT CCCAGCAGAGCTCCAGCCCCCTGCAGAAACCTAGTCAGTCT < 41bp 0.523473508226004 0.765462645760582 0.020647317 0.13280636 prediction 0.483978275069156 Functional Gain - POU6F2 ENSG00000106536 CDS Human protein_coding chr7:39379546 chr7:39379547 nonsynonymous SNV 0.995 0 22 hm5C_associated_SNPs_110633 0 0 0 0 1 POU6F2 chr7:39379614 5'GT 39379614 Upstream 68bp
chr8 84319994 84319994 1 + T G rs57623098 84319991 + 84319971 84320011 41 AACCCAGGAGGCGGAGGTTGCAGTGAGCCAAGTATGCATCA AACCCAGGAGGCGGAGGTTGCAGGGAGCCAAGTATGCATCA < 41bp 0.442204726500505 0.741971977534779 0.9031887 0.93278253 prediction 0.483943955069558 Functional Gain - LINC01419 ENSG00000253898 ncRNA_exonic Human lincRNA chr8:84319991 chr8:84319994 . . 0 24 hm5C_associated_SNPs_110638 0 0 0 0 1 LINC01419 chr8:84319927 3'AG 84319927 Downstream 68bp
chrX 149905801 149905801 1 + C T UCEC 149905800 + 149905780 149905820 41 CATTGCAGCGACGGTTGGGACCGAACAGCCCAGCTCACATC CATTGCAGCGACGGTTGGGACTGAACAGCCCAGCTCACATC < 41bp 0.484147893559983 0.74196517625152 0.06973949 0.12876266 prediction 0.483930352503039 Functional Gain - MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149905800 chrX:149905801 stopgain 0.998 1 22 hm5C_associated_SNPs_110640 0 0 1 0 1 MTMR1 chrX:149905714 3'AG 149905714 Downstream 88bp
chr20 21349207 21349207 1 + C T LUSC 21349206 + 21349186 21349226 41 CCGCTTTTGAGAGGACAAGCCCAGATTCCAAAACTTATGTC CCGCTTTTGAGAGGACAAGCCTAGATTCCAAAACTTATGTC < 41bp 0.48796282795896 0.741962599769884 0.06556663 0.19890204 prediction 0.483925199539768 Functional Gain - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21349206 chr20:21349207 stopgain 0.998 0 22 hm5C_associated_SNPs_110641 0 0 1 0 1 XRN2 chr20:21349228 5'GT 21349228 Upstream 22bp
chrX 85404051 85404051 1 + C G BRCA 85404050 + 85404030 85404070 41 GCCATCCAGCCCGGGGTAAACCGCTGCAAACTCATCACCAG GCCATCCAGCCCGGGGTAAACGGCTGCAAACTCATCACCAG < 41bp 0.492117398580978 0.741950513999967 0.3711999 0.78650606 prediction 0.483901027999934 Functional Gain - DACH2 ENSG00000126733 CDS Human protein_coding chrX:85404050 chrX:85404051 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_110642 0 0 0 0 1 DACH2 chrX:85404112 5'GT 85404112 Upstream 62bp
chr11 132205003 132205003 1 + T A LIHC 132204999 + 132204979 132205019 41 GGAGGGCAGGCTGCGTCTGGCTGCTGCCTCTTCTGGTCTTG GGAGGGCAGGCTGCGTCTGGCTGCAGCCTCTTCTGGTCTTG < 41bp 0.490074413333172 0.741948017472126 0.21458021 0.21676409 prediction 0.483896034944252 Functional Gain - NTM ENSG00000182667 CDS Human protein_coding chr11:132204999 chr11:132205003 nonsynonymous SNV 0.905 2 25 hm5C_associated_SNPs_110643 0 0 0 0 1 NTM chr11:132204940 3'AG 132204940 Downstream 64bp
chr12 32446976 32446976 1 + C A UCEC 32446975 + 32446955 32446995 41 ATACGGATGAAGGATGAAATCCGAGAATATAAGTTCCGGGA ATACGGATGAAGGATGAAATCAGAGAATATAAGTTCCGGGA < 41bp 0.483927267055049 0.741946089329384 0.54214716 0.8878741 prediction 0.483892178658768 Functional Gain - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32446975 chr12:32446976 synonymous SNV . 0 22 hm5C_associated_SNPs_110644 0 0 0 1 1 BICD1 chr12:32446928 3'AG 32446928 Downstream 49bp
chr7 74015470 74015470 1 + C T SKCM 74015469 + 74015449 74015489 41 CCTCTTCCTCGTCCTCTAACCCGGATTCAGTGGCATCGGCC CCTCTTCCTCGTCCTCTAACCTGGATTCAGTGGCATCGGCC < 41bp 0.511964621598114 0.753909082459439 0.8915177 0.8900401 prediction 0.48388892172265 Functional Gain - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:74015469 chr7:74015470 nonsynonymous SNV 0.983 0 22 hm5C_associated_SNPs_110646 0 0 1 0 2 GTF2IRD1 chr7:74015371 3'AG 74015371 Downstream 100bp
chr7 74015470 74015470 1 + C T SKCM 74015469 + 74015449 74015489 41 CCTCTTCCTCGTCCTCTAACCCGGATTCAGTGGCATCGGCC CCTCTTCCTCGTCCTCTAACCTGGATTCAGTGGCATCGGCC < 41bp 0.511964621598114 0.753909082459439 0.8915177 0.8900401 prediction 0.48388892172265 Functional Gain - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:74015469 chr7:74015470 nonsynonymous SNV 0.983 0 22 hm5C_associated_SNPs_110646 0 0 1 0 2 GTF2IRD1 chr7:74015507 5'GT 74015507 Upstream 38bp
chr2 85852780 85852780 1 + T C STAD 85852778 + 85852758 85852798 41 GGTATTGTGGGACTGAATAACATAAAGGCCAATGATTATGC GGTATTGTGGGACTGAATAACACAAAGGCCAATGATTATGC < 41bp 0.594414947273703 0.836352535423971 0.29372936 0.2462543 prediction 0.483875176300536 Functional Gain - USP39 ENSG00000168883 CDS Human protein_coding chr2:85852778 chr2:85852780 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_110649 0 0 1 0 1 USP39 chr2:85852814 5'GT 85852814 Upstream 35bp
chr9 71080072 71080072 1 + T A BLCA 71080068 + 71080048 71080088 41 AGCTGGATGGAGATTCTTCTCAAATCTGATGGACTCAGGAC AGCTGGATGGAGATTCTTCTCAAAACTGATGGACTCAGGAC < 41bp 0.414132059505683 0.741907203765851 0.29159516 0.39022732 prediction 0.483814407531702 Functional Gain - PGM5 ENSG00000154330 CDS Human protein_coding chr9:71080068 chr9:71080072 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_110654 0 0 0 0 1 PGM5 chr9:71080124 5'GT 71080124 Upstream 53bp
chr19 6850689 6850689 1 + T G SARC 6850687 + 6850667 6850707 41 CCATCTGGTTCCAGATATAACGTCGAGGTCAAGCACATTAA CCATCTGGTTCCAGATATAACGGCGAGGTCAAGCACATTAA < 41bp 0.396977415984399 0.741893366358514 0.22517341 0.5205263 prediction 0.483786732717028 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6850687 chr19:6850689 nonsynonymous SNV 0.986 0 23 hm5C_associated_SNPs_110656 0 0 0 0 2 VAV1 chr19:6850681 3'AG 6850681 Downstream 9bp
chr19 6850689 6850689 1 + T G SARC 6850687 + 6850667 6850707 41 CCATCTGGTTCCAGATATAACGTCGAGGTCAAGCACATTAA CCATCTGGTTCCAGATATAACGGCGAGGTCAAGCACATTAA < 41bp 0.396977415984399 0.741893366358514 0.22517341 0.5205263 prediction 0.483786732717028 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6850687 chr19:6850689 nonsynonymous SNV 0.986 0 23 hm5C_associated_SNPs_110656 0 0 0 0 2 VAV1 chr19:6850768 5'GT 6850768 Upstream 80bp
chr6 395874 395874 1 + C A UCEC 395873 + 395853 395893 41 AGCAGCTCACCCTGGAGGACCCGCAGATGTCCATGAGCCAC AGCAGCTCACCCTGGAGGACCAGCAGATGTCCATGAGCCAC < 41bp 0.481060577923556 0.741879853595739 0.17103633 0.31228477 prediction 0.483759707191479 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:395873 chr6:395874 nonsynonymous SNV 0.984 1 22 hm5C_associated_SNPs_110658 0 0 0 0 2 IRF4 chr6:395847 3'AG 395847 Downstream 28bp
chr6 395874 395874 1 + C A UCEC 395873 + 395853 395893 41 AGCAGCTCACCCTGGAGGACCCGCAGATGTCCATGAGCCAC AGCAGCTCACCCTGGAGGACCAGCAGATGTCCATGAGCCAC < 41bp 0.481060577923556 0.741879853595739 0.17103633 0.31228477 prediction 0.483759707191479 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:395873 chr6:395874 nonsynonymous SNV 0.984 1 22 hm5C_associated_SNPs_110658 0 0 0 0 2 IRF4 chr6:395935 5'GT 395935 Upstream 62bp
chr19 8536272 8536272 1 + C T STAD 8536271 + 8536251 8536291 41 CAACCCATTGATGCCAATCACCTGAATAAAGGCATCGGAAT CAACCCATTGATGCCAATCACTTGAATAAAGGCATCGGAAT < 41bp 0.483256690307618 0.741876250257092 0.2732299 0.2985059 prediction 0.483752500514184 Functional Gain - HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8536271 chr19:8536272 synonymous SNV . 0 22 hm5C_associated_SNPs_110661 0 0 1 0 2 HNRNPM chr19:8536210 3'AG 8536210 Downstream 63bp
chr19 8536272 8536272 1 + C T STAD 8536271 + 8536251 8536291 41 CAACCCATTGATGCCAATCACCTGAATAAAGGCATCGGAAT CAACCCATTGATGCCAATCACTTGAATAAAGGCATCGGAAT < 41bp 0.483256690307618 0.741876250257092 0.2732299 0.2985059 prediction 0.483752500514184 Functional Gain - HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8536271 chr19:8536272 synonymous SNV . 0 22 hm5C_associated_SNPs_110661 0 0 1 0 2 HNRNPM chr19:8536311 5'GT 8536311 Upstream 40bp
chr1 156841514 156841514 1 + C A COAD 156841513 + 156841493 156841533 41 TGGGCAGAGAACGATGTGGGCCGGGCAGAGGTCTCTGTTCA TGGGCAGAGAACGATGTGGGCAGGGCAGAGGTCTCTGTTCA < 41bp 0.542078599512146 0.783942455821329 0.26043728 0.36340034 prediction 0.483727712618366 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156841513 chr1:156841514 synonymous SNV . 0 22 hm5C_associated_SNPs_110662 0 0 0 0 2 NTRK1 chr1:156841415 3'AG 156841415 Downstream 100bp
chr1 156841514 156841514 1 + C A COAD 156841513 + 156841493 156841533 41 TGGGCAGAGAACGATGTGGGCCGGGCAGAGGTCTCTGTTCA TGGGCAGAGAACGATGTGGGCAGGGCAGAGGTCTCTGTTCA < 41bp 0.542078599512146 0.783942455821329 0.26043728 0.36340034 prediction 0.483727712618366 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156841513 chr1:156841514 synonymous SNV . 0 22 hm5C_associated_SNPs_110662 0 0 0 0 2 NTRK1 chr1:156841547 5'GT 156841547 Upstream 34bp
chr12 85674209 85674209 1 + C A LUAD 85674205 + 85674185 85674225 41 GCGTGCAGGCCTTCGGACCCCTGCCCCGCGCCGAGCATCAC GCGTGCAGGCCTTCGGACCCCTGCACCGCGCCGAGCATCAC < 41bp 0.690198152225041 0.932054711204088 0.118210614 0.1398871 prediction 0.483713117958093 Functional Gain - ALX1 ENSG00000180318 CDS Human protein_coding chr12:85674205 chr12:85674209 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_110664 0 0 0 0 1 ALX1 chr12:85674265 5'GT 85674265 Upstream 57bp
chr19 10961014 10961014 1 + A G UCEC 10961011 + 10960991 10961031 41 CAAGAGGACCCCATCCACATCGCATGCATGGCCCCTGGGAA CAAGAGGACCCCATCCACATCGCGTGCATGGCCCCTGGGAA < 41bp 0.534307638847717 0.776142950469703 0.2959156 0.3783982 prediction 0.483670623243972 Functional Gain - C19orf38 ENSG00000214212 CDS Human protein_coding chr19:10961011 chr19:10961014 synonymous SNV . 0 24 hm5C_associated_SNPs_110671 0 0 0 0 1 C19orf38 chr19:10960935 3'AG 10960935 Downstream 80bp
chr7 129948207 129948207 1 + C A LUAD 129948206 + 129948186 129948226 41 AGCTCCTGCATTGGTGCTGACCCAAATAGAAACTGGAACGC AGCTCCTGCATTGGTGCTGACACAAATAGAAACTGGAACGC < 41bp 0.555022658130581 0.796828473150848 0.13919845 0.29448003 prediction 0.483611630040534 Functional Gain - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129948206 chr7:129948207 nonsynonymous SNV 0.236 3 22 hm5C_associated_SNPs_110676 0 0 0 0 2 CPA4 chr7:129948147 3'AG 129948147 Downstream 61bp
chr7 129948207 129948207 1 + C A LUAD 129948206 + 129948186 129948226 41 AGCTCCTGCATTGGTGCTGACCCAAATAGAAACTGGAACGC AGCTCCTGCATTGGTGCTGACACAAATAGAAACTGGAACGC < 41bp 0.555022658130581 0.796828473150848 0.13919845 0.29448003 prediction 0.483611630040534 Functional Gain - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129948206 chr7:129948207 nonsynonymous SNV 0.236 3 22 hm5C_associated_SNPs_110676 0 0 0 0 2 CPA4 chr7:129948237 5'GT 129948237 Upstream 31bp
chr16 3707763 3707763 1 + C A rs201975812 3707762 + 3707742 3707782 41 GCTCCGAGGCGCCGTTGTTCCCGACTCGGCTCTTCCCTTTA GCTCCGAGGCGCCGTTGTTCCAGACTCGGCTCTTCCCTTTA < 41bp 0.477961199236117 0.741802822419261 0.016403407 0.3792259 prediction 0.483605644838521 Functional Gain - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707762 chr16:3707763 synonymous SNV . 0 22 hm5C_associated_SNPs_110680 0 0 1 0 2 DNASE1 chr16:3707721 3'AG 3707721 Downstream 43bp
chr16 3707763 3707763 1 + C A rs201975812 3707762 + 3707742 3707782 41 GCTCCGAGGCGCCGTTGTTCCCGACTCGGCTCTTCCCTTTA GCTCCGAGGCGCCGTTGTTCCAGACTCGGCTCTTCCCTTTA < 41bp 0.477961199236117 0.741802822419261 0.016403407 0.3792259 prediction 0.483605644838521 Functional Gain - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707762 chr16:3707763 synonymous SNV . 0 22 hm5C_associated_SNPs_110680 0 0 1 0 2 DNASE1 chr16:3707817 5'GT 3707817 Upstream 55bp
chr12 27800727 27800727 1 + T C BLCA 27800725 + 27800705 27800745 41 TTCGAGATTTGGAGTTTTGTCTTGAAGAGCACAGAGAGAAG TTCGAGATTTGGAGTTTTGTCTCGAAGAGCACAGAGAGAAG < 41bp 0.598059426119661 0.839857729698252 0.12689641 0.9071597 prediction 0.483596607157182 Functional Gain - PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27800725 chr12:27800727 synonymous SNV . 0 23 hm5C_associated_SNPs_110682 0 0 1 0 2 PPFIBP1 chr12:27800662 3'AG 27800662 Downstream 66bp
chr12 27800727 27800727 1 + T C BLCA 27800725 + 27800705 27800745 41 TTCGAGATTTGGAGTTTTGTCTTGAAGAGCACAGAGAGAAG TTCGAGATTTGGAGTTTTGTCTCGAAGAGCACAGAGAGAAG < 41bp 0.598059426119661 0.839857729698252 0.12689641 0.9071597 prediction 0.483596607157182 Functional Gain - PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27800725 chr12:27800727 synonymous SNV . 0 23 hm5C_associated_SNPs_110682 0 0 1 0 2 PPFIBP1 chr12:27800775 5'GT 27800775 Upstream 49bp
chr11 57118319 57118319 1 + C G rs141108136 57118318 + 57118298 57118338 41 CATCCCCAAATACTCCTTCACCCGGCTCGACAGCGTTTCTG CATCCCCAAATACTCCTTCACGCGGCTCGACAGCGTTTCTG < 41bp 0.413786702031558 0.741781036424182 0.05339226 0.37585002 prediction 0.483562072848363 Functional Gain - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57118318 chr11:57118319 synonymous SNV . 0 22 hm5C_associated_SNPs_110687 0 0 0 0 2 P2RX3 chr11:57118236 3'AG 57118236 Downstream 84bp
chr11 57118319 57118319 1 + C G rs141108136 57118318 + 57118298 57118338 41 CATCCCCAAATACTCCTTCACCCGGCTCGACAGCGTTTCTG CATCCCCAAATACTCCTTCACGCGGCTCGACAGCGTTTCTG < 41bp 0.413786702031558 0.741781036424182 0.05339226 0.37585002 prediction 0.483562072848363 Functional Gain - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57118318 chr11:57118319 synonymous SNV . 0 22 hm5C_associated_SNPs_110687 0 0 0 0 2 P2RX3 chr11:57118372 5'GT 57118372 Upstream 54bp
chr8 125015557 125015557 1 + C A LUAD 125015553 + 125015533 125015573 41 TTCCTATGGCCTCCACCACTCACCCGGAGAAGCCACTGGTG TTCCTATGGCCTCCACCACTCACCAGGAGAAGCCACTGGTG < 41bp 0.324976675558972 0.741774795013343 0.062138915 0.18041685 prediction 0.483549590026686 Functional Gain - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:125015553 chr8:125015557 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_110688 0 0 0 0 1 FER1L6 chr8:125015587 5'GT 125015587 Upstream 31bp
chr17 4701090 4701090 1 + C G UCEC 4701089 + 4701069 4701109 41 TCATCATCGCAGGCTGGGACCCTCAAGAAGGAGGGCAGGTC TCATCATCGCAGGCTGGGACCGTCAAGAAGGAGGGCAGGTC < 41bp 0.422112144551236 0.741770648548144 0.41200036 0.26157662 prediction 0.483541297096289 Functional Gain - PSMB6 ENSG00000142507 CDS Human protein_coding chr17:4701089 chr17:4701090 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_110689 0 0 1 0 1 PSMB6 chr17:4701106 5'GT 4701106 Upstream 17bp
chr14 66082952 66082952 1 + C A UCEC 66082951 + 66082931 66082971 41 CTGGGGAAGGATCATGAAATCCTGAGGAGGAGGATTGAAAA CTGGGGAAGGATCATGAAATCATGAGGAGGAGGATTGAAAA < 41bp 0.508904085160815 0.750667390838374 0.27456427 0.22505683 prediction 0.483526611355117 Functional Gain - FUT8 ENSG00000033170 CDS Human protein_coding chr14:66082951 chr14:66082952 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_110691 0 0 1 1 1 FUT8 chr14:66082929 3'AG 66082929 Downstream 24bp
chr17 41599455 41599455 1 + C T GBM 41599454 + 41599434 41599474 41 TCCTGTGGCAAGTCCACAGTCCGAGTGCAGAAGGCCATCTG TCCTGTGGCAAGTCCACAGTCTGAGTGCAGAAGGCCATCTG < 41bp 0.516512920167603 0.758271773800659 0.6986277 0.3052011 prediction 0.483517707266112 Functional Gain - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41599454 chr17:41599455 stopgain 1.000 1 22 hm5C_associated_SNPs_110694 0 0 1 0 1 DHX8 chr17:41599415 3'AG 41599415 Downstream 41bp
chr9 129456075 129456075 1 + C A rs544649941 129456074 + 129456054 129456094 41 GCAGCAGGAGCAGCAGAACTCCCAGCGGCTGGGCCAGGGTG GCAGCAGGAGCAGCAGAACTCACAGCGGCTGGGCCAGGGTG < 41bp 0.553606178695909 0.795356301219796 0.54943055 0.8192639 prediction 0.483500245047774 Functional Gain - LMX1B ENSG00000136944 CDS Human protein_coding chr9:129456074 chr9:129456075 synonymous SNV . 0 22 hm5C_associated_SNPs_110697 0 0 1 0 1 LMX1B chr9:129456025 3'AG 129456025 Downstream 51bp
chr15 80423582 80423582 1 + C T UCEC 80423581 + 80423561 80423601 41 AAAGCAAGTCTCTTGAAAAACCGAAACAAAAAAAGAATCGC AAAGCAAGTCTCTTGAAAAACTGAAACAAAAAAAGAATCGC < 41bp 0.519100692034743 0.760848642982464 0.80797035 0.8686522 prediction 0.483495901895442 Functional Gain - ZFAND6 ENSG00000086666 CDS Human protein_coding chr15:80423581 chr15:80423582 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_110698 0 0 1 0 2 ZFAND6 chr15:80423522 3'AG 80423522 Downstream 61bp
chr15 80423582 80423582 1 + C T UCEC 80423581 + 80423561 80423601 41 AAAGCAAGTCTCTTGAAAAACCGAAACAAAAAAAGAATCGC AAAGCAAGTCTCTTGAAAAACTGAAACAAAAAAAGAATCGC < 41bp 0.519100692034743 0.760848642982464 0.80797035 0.8686522 prediction 0.483495901895442 Functional Gain - ZFAND6 ENSG00000086666 CDS Human protein_coding chr15:80423581 chr15:80423582 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_110698 0 0 1 0 2 ZFAND6 chr15:80423635 5'GT 80423635 Upstream 54bp
chr16 57415980 57415980 1 + C A HNSC 57415979 + 57415959 57415999 41 ACAGGCTGTTCTGTGCCGACCCGAAGGAGCAATGGGTCAAG ACAGGCTGTTCTGTGCCGACCAGAAGGAGCAATGGGTCAAG < 41bp 0.557085159127036 0.79882728977861 0.04394996 0.2448233 prediction 0.483484261303148 Functional Gain - CX3CL1 ENSG00000006210 CDS Human protein_coding chr16:57415979 chr16:57415980 nonsynonymous SNV 0.526 4 22 hm5C_associated_SNPs_110700 0 0 1 0 1 CX3CL1 chr16:57415942 3'AG 57415942 Downstream 39bp
chr20 32436418 32436418 1 + C T SKCM 32436417 + 32436397 32436437 41 GCTCAAGAACATGGGCTATGCCGCCAAGGCCATGAAGGCGG GCTCAAGAACATGGGCTATGCTGCCAAGGCCATGAAGGCGG < 41bp 0.507578418761784 0.749318166759631 0.1823048 0.16399696 prediction 0.483479495995694 Functional Gain - CHMP4B ENSG00000101421 CDS Human protein_coding chr20:32436417 chr20:32436418 synonymous SNV . 0 22 hm5C_associated_SNPs_110701 0 0 1 0 1 CHMP4B chr20:32436450 5'GT 32436450 Upstream 33bp
chr16 67236330 67236330 1 + T G KIRP 67236328 + 67236308 67236348 41 ACAGCCCAGGACTTCTCACCCATGTTCTTCGGCCAAGACCA ACAGCCCAGGACTTCTCACCCAGGTTCTTCGGCCAAGACCA < 41bp 0.383033260072491 0.741722255882349 0.3497877 0.8984641 prediction 0.483444511764698 Functional Gain - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67236328 chr16:67236330 nonsynonymous SNV 0.976 3 23 hm5C_associated_SNPs_110706 0 0 0 0 1 ELMO3 chr16:67236300 3'AG 67236300 Downstream 31bp
chr2 1457548 1457548 1 + C A LUSC 1457547 + 1457527 1457567 41 GAGGACGGCTTCAGTCAGCCCCGAGGCTGGAACCCCGGCTT GAGGACGGCTTCAGTCAGCCCAGAGGCTGGAACCCCGGCTT < 41bp 0.525470555399443 0.767189769340564 0.8427674 0.9073725 prediction 0.483438427882242 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1457547 chr2:1457548 synonymous SNV . 0 22 hm5C_associated_SNPs_110707 0 0 0 0 2 TPO chr2:1457466 3'AG 1457466 Downstream 83bp
chr2 1457548 1457548 1 + C A LUSC 1457547 + 1457527 1457567 41 GAGGACGGCTTCAGTCAGCCCCGAGGCTGGAACCCCGGCTT GAGGACGGCTTCAGTCAGCCCAGAGGCTGGAACCCCGGCTT < 41bp 0.525470555399443 0.767189769340564 0.8427674 0.9073725 prediction 0.483438427882242 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1457547 chr2:1457548 synonymous SNV . 0 22 hm5C_associated_SNPs_110707 0 0 0 0 2 TPO chr2:1457595 5'GT 1457595 Upstream 48bp
chr19 581373 581373 1 + A G LUAD 581370 + 581350 581390 41 GAGTTCCTCGCAGGGCCGGTCAGAGCTACACATTGAGAACC GAGTTCCTCGCAGGGCCGGTCAGGGCTACACATTGAGAACC < 41bp 0.498186788070298 0.741718591384168 0.8302841 0.9263743 prediction 0.483437182768337 Functional Gain - BSG ENSG00000172270 CDS Human protein_coding chr19:581370 chr19:581373 nonsynonymous SNV 0.009 3 24 hm5C_associated_SNPs_110708 0 0 1 0 1 BSG chr19:581315 3'AG 581315 Downstream 59bp
chr2 173882199 173882199 1 + C T SKCM 173882198 + 173882178 173882218 41 AATACGGGCGATGAGAGAGCCCAGAAGCGCCAGCCTATCCG AATACGGGCGATGAGAGAGCCTAGAAGCGCCAGCCTATCCG < 41bp 0.49993654728396 0.741714799087974 0.106135756 0.1355617 prediction 0.483429598175947 Functional Gain - RAPGEF4 ENSG00000091428 CDS Human protein_coding chr2:173882198 chr2:173882199 stopgain 0.999 1 22 hm5C_associated_SNPs_110709 0 0 0 0 2 RAPGEF4 chr2:173882154 3'AG 173882154 Downstream 46bp
chr2 173882199 173882199 1 + C T SKCM 173882198 + 173882178 173882218 41 AATACGGGCGATGAGAGAGCCCAGAAGCGCCAGCCTATCCG AATACGGGCGATGAGAGAGCCTAGAAGCGCCAGCCTATCCG < 41bp 0.49993654728396 0.741714799087974 0.106135756 0.1355617 prediction 0.483429598175947 Functional Gain - RAPGEF4 ENSG00000091428 CDS Human protein_coding chr2:173882198 chr2:173882199 stopgain 0.999 1 22 hm5C_associated_SNPs_110709 0 0 0 0 2 RAPGEF4 chr2:173882232 5'GT 173882232 Upstream 34bp
chr11 124561605 124561605 1 + C A BLCA 124561604 + 124561584 124561624 41 CTGTCCAGGAGCAAGAACCACCTGAGAAAAGTGATCCTAAA CTGTCCAGGAGCAAGAACCACATGAGAAAAGTGATCCTAAA < 41bp 0.484371170218228 0.741714662681937 0.4035604 0.5520499 prediction 0.483429325363874 Functional Gain - SPA17 ENSG00000064199 CDS Human protein_coding chr11:124561604 chr11:124561605 nonsynonymous SNV 0.065 1 22 hm5C_associated_SNPs_110710 0 0 0 0 2 SPA17 chr11:124561592 3'AG 124561592 Downstream 14bp
chr11 124561605 124561605 1 + C A BLCA 124561604 + 124561584 124561624 41 CTGTCCAGGAGCAAGAACCACCTGAGAAAAGTGATCCTAAA CTGTCCAGGAGCAAGAACCACATGAGAAAAGTGATCCTAAA < 41bp 0.484371170218228 0.741714662681937 0.4035604 0.5520499 prediction 0.483429325363874 Functional Gain - SPA17 ENSG00000064199 CDS Human protein_coding chr11:124561604 chr11:124561605 nonsynonymous SNV 0.065 1 22 hm5C_associated_SNPs_110710 0 0 0 0 2 SPA17 chr11:124561678 5'GT 124561678 Upstream 74bp
chr1 168260485 168260485 1 + C G UCEC 168260481 + 168260461 168260501 41 CCTGCTGGACTTTGTCCCTACGGACAGTCACCGCTGGAAGT CCTGCTGGACTTTGTCCCTACGGAGAGTCACCGCTGGAAGT < 41bp 0.444394352747804 0.741709909358257 0.28256375 0.31262183 prediction 0.483419818716514 Functional Gain - TBX19 ENSG00000143178 CDS Human protein_coding chr1:168260481 chr1:168260485 nonsynonymous SNV 0.748 5 25 hm5C_associated_SNPs_110711 0 0 0 0 1 TBX19 chr1:168260398 3'AG 168260398 Downstream 88bp
chr2 71189921 71189921 1 + T C BLCA 71189919 + 71189899 71189939 41 ACCTCCAGGATCGAGCGGATCATCACCCCGCGCCTGGCGCT ACCTCCAGGATCGAGCGGATCACCACCCCGCGCCTGGCGCT < 41bp 0.455025934019617 0.741708552485067 0.13400704 0.17661479 prediction 0.483417104970133 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71189919 chr2:71189921 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_110712 0 0 0 0 1 ATP6V1B1 chr2:71189907 3'AG 71189907 Downstream 15bp
chr12 81101946 81101946 1 + C A LUSC 81101945 + 81101925 81101965 41 CGGCTGCAGGACCTGCTGCACCGGCTGGATCAGCAGGAGAA CGGCTGCAGGACCTGCTGCACAGGCTGGATCAGCAGGAGAA < 41bp 0.535196885606159 0.776902228723649 0.24277666 0.31149852 prediction 0.483410686234979 Functional Gain - MYF6 ENSG00000111046 CDS Human protein_coding chr12:81101945 chr12:81101946 synonymous SNV . 0 22 hm5C_associated_SNPs_110713 0 0 0 0 1 MYF6 chr12:81102017 5'GT 81102017 Upstream 72bp
chr8 22472465 22472465 1 + C T SKCM 22472464 + 22472444 22472484 41 GTGCTGGTGCGTACCGCCATCCGCTGTGCGCAGGCCCAGAC GTGCTGGTGCGTACCGCCATCTGCTGTGCGCAGGCCCAGAC < 41bp 0.551312605347862 0.793017309432616 0.14986107 0.20258284 prediction 0.48340940816951 Functional Gain - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22472464 chr8:22472465 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_110714 0 0 1 0 1 CCAR2 chr8:22472514 5'GT 22472514 Upstream 50bp
chr16 28914676 28914676 1 + C T GBM 28914675 + 28914655 28914695 41 GCTCCGGGCCCTGGACCTCACCCAGTGGCTCATGGTCCTCA GCTCCGGGCCCTGGACCTCACTCAGTGGCTCATGGTCCTCA < 41bp 0.485627300678491 0.741686037191255 0.20707548 0.2780375 prediction 0.483372074382509 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28914675 chr16:28914676 synonymous SNV . 0 22 hm5C_associated_SNPs_110715 0 0 1 0 1 ATP2A1 chr16:28914644 3'AG 28914644 Downstream 33bp
chr19 41726703 41726703 1 + A G LUSC 41726700 + 41726680 41726720 41 CCTGGAGCTCGCGGACAGCACCCAGACCCAGGTGCCCCTGG CCTGGAGCTCGCGGACAGCACCCGGACCCAGGTGCCCCTGG < 41bp 0.518456966488496 0.760135282463952 0.090197146 0.83309126 prediction 0.48335663195091 Functional Gain - AXL ENSG00000167601 CDS Human protein_coding chr19:41726700 chr19:41726703 nonsynonymous SNV 0.947 3 24 hm5C_associated_SNPs_110719 0 0 0 0 1 AXL chr19:41726763 5'GT 41726763 Upstream 61bp
chr11 63174123 63174123 1 + C A LUAD 63174122 + 63174102 63174142 41 TACATGAACCGTCGAGCAAGCCAGATGCTTCTCATGTTCCT TACATGAACCGTCGAGCAAGCAAGATGCTTCTCATGTTCCT < 41bp 0.552500027672431 0.794176750763476 0.24637628 0.32167184 prediction 0.483353446182089 Functional Gain - SLC22A9 ENSG00000149742 CDS Human protein_coding chr11:63174122 chr11:63174123 nonsynonymous SNV 0.000 3 22 hm5C_associated_SNPs_110721 0 0 0 0 1 SLC22A9 chr11:63174183 5'GT 63174183 Upstream 61bp
chr22 25023491 25023491 1 + C T SKCM 25023490 + 25023470 25023510 41 CCCGATCTCCTACTACAAGCCCGAGTTCTACACGCCGGATG CCCGATCTCCTACTACAAGCCTGAGTTCTACACGCCGGATG < 41bp 0.502831443474876 0.744505268962422 0.14505762 0.23446363 prediction 0.483347650975093 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25023490 chr22:25023491 synonymous SNV . 0 22 hm5C_associated_SNPs_110724 0 0 0 0 2 GGT1 chr22:25023399 3'AG 25023399 Downstream 93bp
chr22 25023491 25023491 1 + C T SKCM 25023490 + 25023470 25023510 41 CCCGATCTCCTACTACAAGCCCGAGTTCTACACGCCGGATG CCCGATCTCCTACTACAAGCCTGAGTTCTACACGCCGGATG < 41bp 0.502831443474876 0.744505268962422 0.14505762 0.23446363 prediction 0.483347650975093 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25023490 chr22:25023491 synonymous SNV . 0 22 hm5C_associated_SNPs_110724 0 0 0 0 2 GGT1 chr22:25023586 5'GT 25023586 Upstream 96bp
chr9 71144546 71144546 1 + C A rs190312271 71144545 + 71144525 71144565 41 CAGATTCATGAGAGAACTGGCCGGAGGGGACCCACTGTCAT CAGATTCATGAGAGAACTGGCAGGAGGGGACCCACTGTCAT < 41bp 0.539529581374738 0.781203322261903 0.3582 0.61977947 prediction 0.48334748177433 Functional Gain - PGM5 ENSG00000154330 CDS Human protein_coding chr9:71144545 chr9:71144546 synonymous SNV . 0 22 hm5C_associated_SNPs_110725 0 0 0 0 1 PGM5 chr9:71144483 3'AG 71144483 Downstream 64bp
chr16 223497 223497 1 + C A COAD 223496 + 223476 223516 41 AAGCCACTGCCTGCTGGTGACCCTGGCCGCCCACCTCCCCG AAGCCACTGCCTGCTGGTGACACTGGCCGCCCACCTCCCCG < 41bp 0.489818467261932 0.741672947191584 0.29416734 0.35828477 prediction 0.483345894383167 Functional Gain - HBA2 ENSG00000188536 CDS Human protein_coding chr16:223496 chr16:223497 synonymous SNV . 0 22 hm5C_associated_SNPs_110726 0 0 1 0 1 HBA2 chr16:223471 3'AG 223471 Downstream 27bp
chr8 21960076 21960076 1 + C A UCEC 21960075 + 21960055 21960095 41 TGCAGAGAATCCAGAGGGTACCCCAGTTCCCAGGCAAGCTG TGCAGAGAATCCAGAGGGTACACCAGTTCCCAGGCAAGCTG < 41bp 0.485960642860114 0.74167284989092 0.1095784 0.25739133 prediction 0.48334569978184 Functional Gain - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21960075 chr8:21960076 nonsynonymous SNV 0.976 4 22 hm5C_associated_SNPs_110727 0 0 1 0 2 FAM160B2 chr8:21960039 3'AG 21960039 Downstream 38bp
chr8 21960076 21960076 1 + C A UCEC 21960075 + 21960055 21960095 41 TGCAGAGAATCCAGAGGGTACCCCAGTTCCCAGGCAAGCTG TGCAGAGAATCCAGAGGGTACACCAGTTCCCAGGCAAGCTG < 41bp 0.485960642860114 0.74167284989092 0.1095784 0.25739133 prediction 0.48334569978184 Functional Gain - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21960075 chr8:21960076 nonsynonymous SNV 0.976 4 22 hm5C_associated_SNPs_110727 0 0 1 0 2 FAM160B2 chr8:21960139 5'GT 21960139 Upstream 64bp
chr17 17250196 17250196 1 + C A rs149998296 17250192 + 17250172 17250212 41 CAGCACCTGCAGCTGCAGCCCCCCCGCCGCAGGCTGCACTC CAGCACCTGCAGCTGCAGCCCCCCAGCCGCAGGCTGCACTC < 41bp 0.331458837485815 0.741668730006154 0.27158666 0.27949426 prediction 0.483337460012308 Functional Gain - NT5M ENSG00000205309 CDS Human protein_coding chr17:17250192 chr17:17250196 nonsynonymous SNV 0.059 0 25 hm5C_associated_SNPs_110728 0 0 0 0 1 NT5M chr17:17250119 3'AG 17250119 Downstream 78bp
chr19 41725332 41725332 1 + C A rs563334837 41725331 + 41725311 41725351 41 GCCCCAGGATGGGCAGGGTCCCGCTGGCCTGGTGCTTGGCG GCCCCAGGATGGGCAGGGTCCAGCTGGCCTGGTGCTTGGCG < 41bp 0.492385894912689 0.741666899484734 0.8122728 0.8843541 prediction 0.483333798969468 Functional Gain - AXL ENSG00000167601 CDS Human protein_coding chr19:41725331 chr19:41725332 nonsynonymous SNV 0.574 1 22 hm5C_associated_SNPs_110729 0 0 1 0 1 AXL chr19:41725382 5'GT 41725382 Upstream 51bp
chr10 103988245 103988245 1 + T C STAD 103988243 + 103988223 103988263 41 ACCGGGGGCCTAAAGCAAACCGTGTGCTTCATCAACTTCAT ACCGGGGGCCTAAAGCAAACCGCGTGCTTCATCAACTTCAT < 41bp 0.478517918740145 0.741656274574716 0.14353481 0.18956047 prediction 0.483312549149432 Functional Gain - ELOVL3 ENSG00000119915 CDS Human protein_coding chr10:103988243 chr10:103988245 nonsynonymous SNV 0.323 1 23 hm5C_associated_SNPs_110731 0 0 0 0 2 ELOVL3 chr10:103988174 3'AG 103988174 Downstream 72bp
chr10 103988245 103988245 1 + T C STAD 103988243 + 103988223 103988263 41 ACCGGGGGCCTAAAGCAAACCGTGTGCTTCATCAACTTCAT ACCGGGGGCCTAAAGCAAACCGCGTGCTTCATCAACTTCAT < 41bp 0.478517918740145 0.741656274574716 0.14353481 0.18956047 prediction 0.483312549149432 Functional Gain - ELOVL3 ENSG00000119915 CDS Human protein_coding chr10:103988243 chr10:103988245 nonsynonymous SNV 0.323 1 23 hm5C_associated_SNPs_110731 0 0 0 0 2 ELOVL3 chr10:103988325 5'GT 103988325 Upstream 81bp
chr2 3653798 3653798 1 + C G rs141032325 3653797 + 3653777 3653817 41 GCCCAATGTGGTGGGTGCCTCCGAGTCCCTACGGTTGTCTT GCCCAATGTGGTGGGTGCCTCGGAGTCCCTACGGTTGTCTT < 41bp 0.443499808230366 0.741649187836713 0.92178446 0.9316583 prediction 0.483298375673427 Functional Gain - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3653797 chr2:3653798 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_110733 0 0 0 0 1 COLEC11 chr2:3653833 5'GT 3653833 Upstream 36bp
chr12 58000752 58000752 1 + C T LUAD 58000751 + 58000731 58000771 41 CTGAGCAAAGAGACCCCAGCCCGGCTGGCCCGGCTTCGGGA CTGAGCAAAGAGACCCCAGCCTGGCTGGCCCGGCTTCGGGA < 41bp 0.499519310547832 0.741638672754987 0.112665474 0.086310476 prediction 0.483277345509975 Functional Gain - DTX3 ENSG00000178498 CDS Human protein_coding chr12:58000751 chr12:58000752 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_110735 0 0 1 0 1 DTX3 chr12:58000667 3'AG 58000667 Downstream 86bp
chr14 90921690 90921690 1 + C G rs113616634 90921686 + 90921666 90921706 41 CGCGGCTGGCTCGGCAGCTCCAGGCTATTCCGAGGAACAGT CGCGGCTGGCTCGGCAGCTCCAGGGTATTCCGAGGAACAGT < 41bp 0.582153358569184 0.82378189224391 0.9046067 0.91483724 prediction 0.483257067349451 Functional Gain - LINC00642 ENSG00000233208 ncRNA_exonic Human lincRNA chr14:90921686 chr14:90921690 . . 0 25 hm5C_associated_SNPs_110738 0 0 0 0 1 LINC00642 chr14:90921722 5'GT 90921722 Upstream 33bp
chr21 46624478 46624478 1 + T C CESC 46624476 + 46624456 46624496 41 TCTTCTCCCTCCAGCTGGAACGTGGTGGGCATCCAGGGATC TCTTCTCCCTCCAGCTGGAACGCGGTGGGCATCCAGGGATC < 41bp 0.478414454273766 0.741625059172535 0.8829735 0.8713035 prediction 0.48325011834507 Functional Gain - ADARB1 ENSG00000197381 CDS Human protein_coding chr21:46624476 chr21:46624478 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_110739 0 0 1 0 1 ADARB1 chr21:46624470 3'AG 46624470 Downstream 9bp
chr13 113765066 113765066 1 + C A UCEC 113765065 + 113765045 113765085 41 CGCCGGCGCGCCAACGCGTTCCTGGAGGAGCTGCGGCCGGG CGCCGGCGCGCCAACGCGTTCATGGAGGAGCTGCGGCCGGG < 41bp 0.482744476066229 0.741625036098081 0.4361295 0.903926 prediction 0.483250072196163 Functional Gain - F7 ENSG00000057593 CDS Human protein_coding chr13:113765065 chr13:113765066 nonsynonymous SNV 0.474 2 22 hm5C_associated_SNPs_110740 0 0 1 0 2 F7 chr13:113765004 3'AG 113765004 Downstream 63bp
chr13 113765066 113765066 1 + C A UCEC 113765065 + 113765045 113765085 41 CGCCGGCGCGCCAACGCGTTCCTGGAGGAGCTGCGGCCGGG CGCCGGCGCGCCAACGCGTTCATGGAGGAGCTGCGGCCGGG < 41bp 0.482744476066229 0.741625036098081 0.4361295 0.903926 prediction 0.483250072196163 Functional Gain - F7 ENSG00000057593 CDS Human protein_coding chr13:113765065 chr13:113765066 nonsynonymous SNV 0.474 2 22 hm5C_associated_SNPs_110740 0 0 1 0 2 F7 chr13:113765164 5'GT 113765164 Upstream 99bp
chr10 50833677 50833677 1 + T C UCEC 50833675 + 50833655 50833695 41 ATCATGCCGGAGCCTGAGCACGTCATCGTAGCCTGCTGCAA ATCATGCCGGAGCCTGAGCACGCCATCGTAGCCTGCTGCAA < 41bp 0.581573439414452 0.8231933877338 0.23764497 0.46257657 prediction 0.483239896638696 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50833675 chr10:50833677 nonsynonymous SNV 0.377 2 23 hm5C_associated_SNPs_110741 0 0 0 0 1 CHAT chr10:50833699 5'GT 50833699 Upstream 23bp
chr3 184289160 184289160 1 + C T SKCM 184289159 + 184289139 184289179 41 AGTTGGCGTGGACATCTCATCCAGAAAGTGGGGTGAGGCTT AGTTGGCGTGGACATCTCATCTAGAAAGTGGGGTGAGGCTT < 41bp 0.518210712777088 0.759818100944134 0.35897076 0.46899676 prediction 0.483214776334091 Functional Gain - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184289159 chr3:184289160 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_110744 0 0 0 0 2 EPHB3 chr3:184289106 3'AG 184289106 Downstream 55bp
chr3 184289160 184289160 1 + C T SKCM 184289159 + 184289139 184289179 41 AGTTGGCGTGGACATCTCATCCAGAAAGTGGGGTGAGGCTT AGTTGGCGTGGACATCTCATCTAGAAAGTGGGGTGAGGCTT < 41bp 0.518210712777088 0.759818100944134 0.35897076 0.46899676 prediction 0.483214776334091 Functional Gain - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184289159 chr3:184289160 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_110744 0 0 0 0 2 EPHB3 chr3:184289170 5'GT 184289170 Upstream 11bp
chr2 97020058 97020058 1 + C A STAD 97020054 + 97020034 97020074 41 CTTTGATGCCAACGATGAACCTGACCACACCGCAGTTGGGG CTTTGATGCCAACGATGAACCTGAACACACCGCAGTTGGGG < 41bp 0.321368850957934 0.741594753657346 0.27425712 0.1909093 prediction 0.483189507314691 Functional Gain - NCAPH ENSG00000121152 CDS Human protein_coding chr2:97020054 chr2:97020058 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_110747 0 0 1 0 1 NCAPH chr2:97020126 5'GT 97020126 Upstream 69bp
chr3 134967254 134967254 1 + C T LUSC 134967253 + 134967233 134967273 41 CTGGACTGTTGGCAGAAGGACCGGAACAGCCGGCCCCGGTT CTGGACTGTTGGCAGAAGGACTGGAACAGCCGGCCCCGGTT < 41bp 0.496132176502507 0.741592353002699 0.85231197 0.7453817 prediction 0.483184706005398 Functional Gain - EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134967253 chr3:134967254 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_110749 0 0 0 0 2 EPHB1 chr3:134967158 3'AG 134967158 Downstream 97bp
chr3 134967254 134967254 1 + C T LUSC 134967253 + 134967233 134967273 41 CTGGACTGTTGGCAGAAGGACCGGAACAGCCGGCCCCGGTT CTGGACTGTTGGCAGAAGGACTGGAACAGCCGGCCCCGGTT < 41bp 0.496132176502507 0.741592353002699 0.85231197 0.7453817 prediction 0.483184706005398 Functional Gain - EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134967253 chr3:134967254 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_110749 0 0 0 0 2 EPHB1 chr3:134967351 5'GT 134967351 Upstream 98bp
chr12 109959007 109959007 1 + C T PAAD 109959006 + 109958986 109959026 41 CACGCCATGAAGGGGGTCATCCGTGTGAAGTTTGTCAATGA CACGCCATGAAGGGGGTCATCTGTGTGAAGTTTGTCAATGA < 41bp 0.495426312180719 0.741591227518026 0.38290793 0.37783897 prediction 0.483182455036051 Functional Gain - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109959006 chr12:109959007 nonsynonymous SNV 0.969 4 22 hm5C_associated_SNPs_110750 0 0 1 0 1 UBE3B chr12:109958953 3'AG 109958953 Downstream 55bp
chr4 113359712 113359712 1 + C A LIHC 113359711 + 113359691 113359731 41 TGATGTGGAGCGACAGATGACCGCACAGCACTATGTGACAG TGATGTGGAGCGACAGATGACAGCACAGCACTATGTGACAG < 41bp 0.494813623895309 0.741580867388968 0.02669856 0.06623882 prediction 0.483161734777937 Functional Gain - ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113359711 chr4:113359712 synonymous SNV . 0 22 hm5C_associated_SNPs_110752 0 0 0 0 2 ALPK1 chr4:113359640 3'AG 113359640 Downstream 73bp
chr4 113359712 113359712 1 + C A LIHC 113359711 + 113359691 113359731 41 TGATGTGGAGCGACAGATGACCGCACAGCACTATGTGACAG TGATGTGGAGCGACAGATGACAGCACAGCACTATGTGACAG < 41bp 0.494813623895309 0.741580867388968 0.02669856 0.06623882 prediction 0.483161734777937 Functional Gain - ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113359711 chr4:113359712 synonymous SNV . 0 22 hm5C_associated_SNPs_110752 0 0 0 0 2 ALPK1 chr4:113359802 5'GT 113359802 Upstream 91bp
chr19 56204341 56204341 1 + C T SKCM 56204340 + 56204320 56204360 41 CCGGGGGATTCGACACGGAGCCCGACGAGTTCTCTGACTTT CCGGGGGATTCGACACGGAGCTCGACGAGTTCTCTGACTTT < 41bp 0.49035031449622 0.741580773303858 0.08146775 0.18660438 prediction 0.483161546607716 Functional Gain - EPN1 ENSG00000063245 CDS Human protein_coding chr19:56204340 chr19:56204341 nonsynonymous SNV 0.084 1 22 hm5C_associated_SNPs_110753 0 0 1 0 3 EPN1 chr19:56204317 3'AG 56204317 Downstream 25bp
chr19 56204341 56204341 1 + C T SKCM 56204340 + 56204320 56204360 41 CCGGGGGATTCGACACGGAGCCCGACGAGTTCTCTGACTTT CCGGGGGATTCGACACGGAGCTCGACGAGTTCTCTGACTTT < 41bp 0.49035031449622 0.741580773303858 0.08146775 0.18660438 prediction 0.483161546607716 Functional Gain - EPN1 ENSG00000063245 CDS Human protein_coding chr19:56204340 chr19:56204341 nonsynonymous SNV 0.084 1 22 hm5C_associated_SNPs_110753 0 0 1 0 3 EPN1 chr19:56204320 3'AG 56204320 Downstream 22bp
chr19 56204341 56204341 1 + C T SKCM 56204340 + 56204320 56204360 41 CCGGGGGATTCGACACGGAGCCCGACGAGTTCTCTGACTTT CCGGGGGATTCGACACGGAGCTCGACGAGTTCTCTGACTTT < 41bp 0.49035031449622 0.741580773303858 0.08146775 0.18660438 prediction 0.483161546607716 Functional Gain - EPN1 ENSG00000063245 CDS Human protein_coding chr19:56204340 chr19:56204341 nonsynonymous SNV 0.084 1 22 hm5C_associated_SNPs_110753 0 0 1 0 3 EPN1 chr19:56204403 5'GT 56204403 Upstream 63bp
chr17 8219405 8219405 1 + C T STAD 8219404 + 8219384 8219424 41 TCCCTAAGTGTGAGCGGCTCCCGCTGCCGTCCTTCCTGCTA TCCCTAAGTGTGAGCGGCTCCTGCTGCCGTCCTTCCTGCTA < 41bp 0.51675077556401 0.758331527070469 0.2635432 0.17255503 prediction 0.483161503012918 Functional Gain - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8219404 chr17:8219405 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_110754 0 0 0 0 2 ARHGEF15 chr17:8219337 3'AG 8219337 Downstream 69bp
chr17 8219405 8219405 1 + C T STAD 8219404 + 8219384 8219424 41 TCCCTAAGTGTGAGCGGCTCCCGCTGCCGTCCTTCCTGCTA TCCCTAAGTGTGAGCGGCTCCTGCTGCCGTCCTTCCTGCTA < 41bp 0.51675077556401 0.758331527070469 0.2635432 0.17255503 prediction 0.483161503012918 Functional Gain - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8219404 chr17:8219405 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_110754 0 0 0 0 2 ARHGEF15 chr17:8219466 5'GT 8219466 Upstream 62bp
chr7 148921056 148921056 1 + C A rs3735312 148921055 + 148921035 148921075 41 AACCCGGGCGGCCCCCCGAGCCGAGGGCTGCTGGACGACGG AACCCGGGCGGCCCCCCGAGCAGAGGGCTGCTGGACGACGG < 41bp 0.531107911842323 0.772687020113608 0.9010427 0.90999454 prediction 0.483158216542571 Functional Gain - ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148921055 chr7:148921056 synonymous SNV . 0 22 hm5C_associated_SNPs_110755 0 0 0 0 1 ZNF282 chr7:148921082 5'GT 148921082 Upstream 27bp
chr16 55725891 55725891 1 + T C COAD 55725889 + 55725869 55725909 41 TTCGTGCTCCTGGTCCATGGCGTCACGCTGCCCGGAGCCTC TTCGTGCTCCTGGTCCATGGCGCCACGCTGCCCGGAGCCTC < 41bp 0.585937611643183 0.827507539220563 0.4681419 0.45448127 prediction 0.483139855154759 Functional Gain - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55725889 chr16:55725891 nonsynonymous SNV 0.991 0 23 hm5C_associated_SNPs_110759 0 0 0 0 2 SLC6A2 chr16:55725830 3'AG 55725830 Downstream 62bp
chr16 55725891 55725891 1 + T C COAD 55725889 + 55725869 55725909 41 TTCGTGCTCCTGGTCCATGGCGTCACGCTGCCCGGAGCCTC TTCGTGCTCCTGGTCCATGGCGCCACGCTGCCCGGAGCCTC < 41bp 0.585937611643183 0.827507539220563 0.4681419 0.45448127 prediction 0.483139855154759 Functional Gain - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55725889 chr16:55725891 nonsynonymous SNV 0.991 0 23 hm5C_associated_SNPs_110759 0 0 0 0 2 SLC6A2 chr16:55725964 5'GT 55725964 Upstream 74bp
chr20 37272380 37272380 1 + C T rs61737953 37272379 + 37272359 37272399 41 TTCCTCAGGAAGGTGGTGGCCCGGGAACAGCACAACAAGAT TTCCTCAGGAAGGTGGTGGCCTGGGAACAGCACAACAAGAT < 41bp 0.509050888605523 0.750613461497262 0.32569793 0.30173188 prediction 0.483125145783477 Functional Gain - ARHGAP40 ENSG00000124143 CDS Human protein_coding chr20:37272379 chr20:37272380 nonsynonymous SNV 0.977 1 22 hm5C_associated_SNPs_110763 0 0 0 0 1 ARHGAP40 chr20:37272347 3'AG 37272347 Downstream 34bp
chr1 156146216 156146216 1 + C T SKCM 156146215 + 156146195 156146235 41 GTTAAAGAAGTCCTGGCTGTCCCCAACTCCATCCTGGAGCT GTTAAAGAAGTCCTGGCTGTCTCCAACTCCATCCTGGAGCT < 41bp 0.55157672951852 0.793132389573352 0.02907291 0.9711219 prediction 0.483111320109663 Functional Gain - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156146215 chr1:156146216 nonsynonymous SNV 0.992 0 22 hm5C_associated_SNPs_110765 0 0 0 0 1 SEMA4A chr1:156146196 3'AG 156146196 Downstream 21bp
chr2 233272697 233272697 1 + C T rs1048987 233272696 + 233272676 233272716 41 GGAGGGGTGCCAGGACATCGCCACGCAGCTCATCTCCAACA GGAGGGGTGCCAGGACATCGCTACGCAGCTCATCTCCAACA < 41bp 0.502149504839839 0.74370488865572 0.3078457 0.05859694 prediction 0.483110767631763 Functional Gain - ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233272696 chr2:233272697 synonymous SNV . 0 22 hm5C_associated_SNPs_110766 0 0 0 0 1 ALPPL2 chr2:233272727 5'GT 233272727 Upstream 31bp
chr1 10239548 10239548 1 + C A UCEC 10239544 + 10239524 10239564 41 ACCATCATGGACCGCTCCATCATCCTGCGGCACCTGCTCAA ACCATCATGGACCGCTCCATCATCATGCGGCACCTGCTCAA < 41bp 0.325816311277123 0.74155303910602 0.027963549 0.02358365 prediction 0.483106078212039 Functional Gain - UBE4B ENSG00000130939 CDS Human protein_coding chr1:10239544 chr1:10239548 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_110767 0 0 1 0 2 UBE4B chr1:10239474 3'AG 10239474 Downstream 75bp
chr1 10239548 10239548 1 + C A UCEC 10239544 + 10239524 10239564 41 ACCATCATGGACCGCTCCATCATCCTGCGGCACCTGCTCAA ACCATCATGGACCGCTCCATCATCATGCGGCACCTGCTCAA < 41bp 0.325816311277123 0.74155303910602 0.027963549 0.02358365 prediction 0.483106078212039 Functional Gain - UBE4B ENSG00000130939 CDS Human protein_coding chr1:10239544 chr1:10239548 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_110767 0 0 1 0 2 UBE4B chr1:10239620 5'GT 10239620 Upstream 73bp
chr17 4497137 4497137 1 + T C rs9916524 4497135 + 4497115 4497155 41 AGAGAAGAATTCCTCTTTCACGTGGTCTGTGCCAAGCTCTG AGAGAAGAATTCCTCTTTCACGCGGTCTGTGCCAAGCTCTG < 41bp 0.526211351519326 0.767764054368191 0.9033934 0.8716867 prediction 0.48310540569773 Functional Gain - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4497135 chr17:4497137 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_110768 0 0 0 0 2 SMTNL2 chr17:4497117 3'AG 4497117 Downstream 21bp
chr17 4497137 4497137 1 + T C rs9916524 4497135 + 4497115 4497155 41 AGAGAAGAATTCCTCTTTCACGTGGTCTGTGCCAAGCTCTG AGAGAAGAATTCCTCTTTCACGCGGTCTGTGCCAAGCTCTG < 41bp 0.526211351519326 0.767764054368191 0.9033934 0.8716867 prediction 0.48310540569773 Functional Gain - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4497135 chr17:4497137 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_110768 0 0 0 0 2 SMTNL2 chr17:4497192 5'GT 4497192 Upstream 56bp
chr10 116038498 116038498 1 + C G SKCM 116038497 + 116038477 116038517 41 GACTGCAGGGTCGAGGCTCACCCCTGTGAGCACAGGACGCT GACTGCAGGGTCGAGGCTCACGCCTGTGAGCACAGGACGCT < 41bp 0.410938999688897 0.741550425528998 0.057193667 0.17548382 prediction 0.483100851057995 Functional Gain - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116038497 chr10:116038498 nonsynonymous SNV 0.474 0 22 hm5C_associated_SNPs_110770 0 0 0 0 1 VWA2 chr10:116038478 3'AG 116038478 Downstream 21bp
chr21 45845616 45845616 1 + C A BLCA 45845615 + 45845595 45845635 41 GCAGGAAGAAGACGGAGGAGCCGGGCGACAGCTACCACGTG GCAGGAAGAAGACGGAGGAGCAGGGCGACAGCTACCACGTG < 41bp 0.510643392244035 0.752185682856004 0.8921988 0.90053636 prediction 0.483084581223939 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45845615 chr21:45845616 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_110773 0 0 0 0 2 TRPM2 chr21:45845553 3'AG 45845553 Downstream 64bp
chr21 45845616 45845616 1 + C A BLCA 45845615 + 45845595 45845635 41 GCAGGAAGAAGACGGAGGAGCCGGGCGACAGCTACCACGTG GCAGGAAGAAGACGGAGGAGCAGGGCGACAGCTACCACGTG < 41bp 0.510643392244035 0.752185682856004 0.8921988 0.90053636 prediction 0.483084581223939 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45845615 chr21:45845616 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_110773 0 0 0 0 2 TRPM2 chr21:45845710 5'GT 45845710 Upstream 95bp
chr19 30021121 30021121 1 + C G rs529454644 30021117 + 30021097 30021137 41 GGCCCACACGCCCACCACCACAGTCGCGGCAGCTGCTGCTG GGCCCACACGCCCACCACCACAGTGGCGGCAGCTGCTGCTG < 41bp 0.588038032314874 0.829577067293817 0.2044088 0.32665968 prediction 0.483078069957888 Functional Gain - VSTM2B ENSG00000187135 CDS Human protein_coding chr19:30021117 chr19:30021121 synonymous SNV . 0 25 hm5C_associated_SNPs_110774 0 0 0 0 1 VSTM2B chr19:30021197 5'GT 30021197 Upstream 77bp
chr6 126068845 126068845 1 + C A rs562391472 126068841 + 126068821 126068861 41 ACGGTCGAGCTTGAGCCTGGCGGGCCGCGGAGCGTTCACCT ACGGTCGAGCTTGAGCCTGGCGGGACGCGGAGCGTTCACCT < 41bp 0.638972810243124 0.880490052715561 0.71889186 0.8974906 prediction 0.483034484944876 Functional Gain - LINC02523;HEY2 ENSG00000237742 ncRNA_intronic Human antisense chr6:126068841 chr6:126068845 . . 0 25 hm5C_associated_SNPs_110778 0 0 0 0 1 LINC02523;HEY2 chr6:126068872 5'GT 126068872 Upstream 28bp
chr17 48453303 48453303 1 + C A rs148490439 48453302 + 48453282 48453322 41 CCAGGATGAAAGCCCAGAGGCCAGAGGAATGCTTAAAACAC CCAGGATGAAAGCCCAGAGGCAAGAGGAATGCTTAAAACAC < 41bp 0.547340327398546 0.788853630076135 0.34735638 0.38593134 prediction 0.483026605355179 Functional Gain - EME1 ENSG00000154920 CDS Human protein_coding chr17:48453302 chr17:48453303 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_110779 0 0 1 0 1 EME1 chr17:48453344 5'GT 48453344 Upstream 42bp
chr14 65521395 65521395 1 + C T STAD 65521394 + 65521374 65521414 41 TGATGTGGTCCTGGGTGTGCCCGAAAACGCTCTGGTAAGAC TGATGTGGTCCTGGGTGTGCCTGAAAACGCTCTGGTAAGAC < 41bp 0.527992480051125 0.769495822566579 0.058756918 0.049539387 prediction 0.483006685030908 Functional Gain - CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65521394 chr14:65521395 synonymous SNV . 0 22 hm5C_associated_SNPs_110780 0 0 0 0 1 CHURC1-FNTB;FNTB chr14:65521407 5'GT 65521407 Upstream 13bp
chr6 36990108 36990108 1 + C G BLCA 36990104 + 36990084 36990124 41 CGCTGCCAGGAGCCCTTCAACGCTCTGACGCGCCGTCGCCA CGCTGCCAGGAGCCCTTCAACGCTGTGACGCGCCGTCGCCA < 41bp 0.444016323681155 0.741500508417644 0.38984087 0.4690877 prediction 0.483001016835288 Functional Gain - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36990104 chr6:36990108 nonsynonymous SNV 0.551 2 25 hm5C_associated_SNPs_110782 0 0 0 0 2 FGD2 chr6:36990015 3'AG 36990015 Downstream 94bp
chr6 36990108 36990108 1 + C G BLCA 36990104 + 36990084 36990124 41 CGCTGCCAGGAGCCCTTCAACGCTCTGACGCGCCGTCGCCA CGCTGCCAGGAGCCCTTCAACGCTGTGACGCGCCGTCGCCA < 41bp 0.444016323681155 0.741500508417644 0.38984087 0.4690877 prediction 0.483001016835288 Functional Gain - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36990104 chr6:36990108 nonsynonymous SNV 0.551 2 25 hm5C_associated_SNPs_110782 0 0 0 0 2 FGD2 chr6:36990146 5'GT 36990146 Upstream 39bp
chr19 35500853 35500853 1 + C T SKCM 35500852 + 35500832 35500872 41 GGAAACTGTTCAGCAAACTCCCCGAAGCAGAACGCCTCATT GGAAACTGTTCAGCAAACTCCTCGAAGCAGAACGCCTCATT < 41bp 0.56782697196509 0.809326811516653 0.3509311 0.90670455 prediction 0.482999679103126 Functional Gain - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35500852 chr19:35500853 nonsynonymous SNV 0.622 5 22 hm5C_associated_SNPs_110783 0 0 1 0 2 GRAMD1A chr19:35500792 3'AG 35500792 Downstream 62bp
chr19 35500853 35500853 1 + C T SKCM 35500852 + 35500832 35500872 41 GGAAACTGTTCAGCAAACTCCCCGAAGCAGAACGCCTCATT GGAAACTGTTCAGCAAACTCCTCGAAGCAGAACGCCTCATT < 41bp 0.56782697196509 0.809326811516653 0.3509311 0.90670455 prediction 0.482999679103126 Functional Gain - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35500852 chr19:35500853 nonsynonymous SNV 0.622 5 22 hm5C_associated_SNPs_110783 0 0 1 0 2 GRAMD1A chr19:35500876 5'GT 35500876 Upstream 24bp
chr3 130694312 130694312 1 + T C UCEC 130694310 + 130694290 130694330 41 TACCAACAAGAGAAGGCACGCATGGGCTCAGCGGGACTCAG TACCAACAAGAGAAGGCACGCACGGGCTCAGCGGGACTCAG < 41bp 0.541652783504938 0.783149776052906 0.3635317 0.2636472 prediction 0.482993985095937 Functional Gain - ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130694310 chr3:130694312 nonsynonymous SNV 0.982 3 23 hm5C_associated_SNPs_110784 0 0 1 0 1 ATP2C1 chr3:130694332 5'GT 130694332 Upstream 21bp
chr10 26500793 26500793 1 + C G rs562384478 26500792 + 26500772 26500812 41 GTGCTGGGCGGCGGAGAGCCCCGAGAAGGAGGAGGAGAGAG GTGCTGGGCGGCGGAGAGCCCGGAGAAGGAGGAGGAGAGAG < 41bp 0.443252200515366 0.741487926539847 0.46250737 0.87799 prediction 0.482975853079693 Functional Gain - MYO3A ENSG00000095777 CDS Human protein_coding chr10:26500792 chr10:26500793 nonsynonymous SNV 0.011 1 22 hm5C_associated_SNPs_110787 0 0 0 0 1 MYO3A chr10:26500772 3'AG 26500772 Downstream 22bp
chr1 212459615 212459615 1 + C G rs75232123 212459614 + 212459594 212459634 41 GGCAGCCAGGCAGAGCTGCACCCGCTGCCCCAGCTCAAAGG GGCAGCCAGGCAGAGCTGCACGCGCTGCCCCAGCTCAAAGG < 41bp 0.616262754031539 0.857750448688307 0.13939106 0.14673805 prediction 0.482975389313536 Functional Gain - PPP2R5A ENSG00000066027 CDS Human protein_coding chr1:212459614 chr1:212459615 nonsynonymous SNV 0.990 1 22 hm5C_associated_SNPs_110788 0 0 1 0 1 PPP2R5A chr1:212459633 5'GT 212459633 Upstream 19bp
chr18 52262255 52262255 1 + C T GBM 52262254 + 52262234 52262274 41 ATATAACCAGTGATGTCTCTCCCAACTTAACTGGGGTCTGC ATATAACCAGTGATGTCTCTCTCAACTTAACTGGGGTCTGC < 41bp 0.49294852514322 0.741484676291132 0.15015778 0.07436177 prediction 0.482969352582264 Functional Gain - DYNAP ENSG00000178690 CDS Human protein_coding chr18:52262254 chr18:52262255 nonsynonymous SNV 0.222 1 22 hm5C_associated_SNPs_110790 0 0 0 0 2 DYNAP chr18:52262170 3'AG 52262170 Downstream 86bp
chr18 52262255 52262255 1 + C T GBM 52262254 + 52262234 52262274 41 ATATAACCAGTGATGTCTCTCCCAACTTAACTGGGGTCTGC ATATAACCAGTGATGTCTCTCTCAACTTAACTGGGGTCTGC < 41bp 0.49294852514322 0.741484676291132 0.15015778 0.07436177 prediction 0.482969352582264 Functional Gain - DYNAP ENSG00000178690 CDS Human protein_coding chr18:52262254 chr18:52262255 nonsynonymous SNV 0.222 1 22 hm5C_associated_SNPs_110790 0 0 0 0 2 DYNAP chr18:52262334 5'GT 52262334 Upstream 80bp
chr20 61162228 61162228 1 + C G rs199563235 61162227 + 61162207 61162247 41 CATTGATGGCGCCGTGCGGCCCGGCCGCAGGTCCCGCAGCC CATTGATGGCGCCGTGCGGCCGGGCCGCAGGTCCCGCAGCC < 41bp 0.629271628451536 0.870741700527349 0.28511393 0.36527252 prediction 0.482940144151625 Functional Gain - MIR1-1HG ENSG00000174407 CDS Human antisense chr20:61162227 chr20:61162228 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_110795 0 0 0 0 2 MIR1-1HG chr20:61162196 3'AG 61162196 Downstream 33bp
chr20 61162228 61162228 1 + C G rs199563235 61162227 + 61162207 61162247 41 CATTGATGGCGCCGTGCGGCCCGGCCGCAGGTCCCGCAGCC CATTGATGGCGCCGTGCGGCCGGGCCGCAGGTCCCGCAGCC < 41bp 0.629271628451536 0.870741700527349 0.28511393 0.36527252 prediction 0.482940144151625 Functional Gain - MIR1-1HG ENSG00000174407 CDS Human antisense chr20:61162227 chr20:61162228 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_110795 0 0 0 0 2 MIR1-1HG chr20:61162307 5'GT 61162307 Upstream 80bp
chr16 57789767 57789767 1 + C T COAD 57789766 + 57789746 57789786 41 TGCACAGACGTCGGTGGACTCCGCTGTGGCCATCAACGACC TGCACAGACGTCGGTGGACTCTGCTGTGGCCATCAACGACC < 41bp 0.515438899634726 0.756907775456642 0.26452577 0.2753904 prediction 0.482937751643834 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57789766 chr16:57789767 synonymous SNV . 0 22 hm5C_associated_SNPs_110796 0 0 1 0 1 KATNB1 chr16:57789753 3'AG 57789753 Downstream 15bp
chr3 37555332 37555332 1 + C T SKCM 37555331 + 37555311 37555351 41 TCTGACCTGCTGGTGGGGGCCCCCATGTTTTCTGAGATCAG TCTGACCTGCTGGTGGGGGCCTCCATGTTTTCTGAGATCAG < 41bp 0.4724169592346 0.741459367794311 0.42973253 0.9433991 prediction 0.482918735588623 Functional Gain - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37555331 chr3:37555332 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_110799 0 0 0 0 2 ITGA9 chr3:37555254 3'AG 37555254 Downstream 79bp
chr3 37555332 37555332 1 + C T SKCM 37555331 + 37555311 37555351 41 TCTGACCTGCTGGTGGGGGCCCCCATGTTTTCTGAGATCAG TCTGACCTGCTGGTGGGGGCCTCCATGTTTTCTGAGATCAG < 41bp 0.4724169592346 0.741459367794311 0.42973253 0.9433991 prediction 0.482918735588623 Functional Gain - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37555331 chr3:37555332 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_110799 0 0 0 0 2 ITGA9 chr3:37555391 5'GT 37555391 Upstream 60bp
chr20 56139555 56139555 1 + C T SKCM 56139554 + 56139534 56139574 41 ATAGGGGAACCTTGTGCCCACCCCAACTCGAGGTTCTGCAC ATAGGGGAACCTTGTGCCCACTCCAACTCGAGGTTCTGCAC < 41bp 0.573339531948639 0.81478589853934 0.035223037 0.94249964 prediction 0.482892733181404 Functional Gain - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56139554 chr20:56139555 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_110801 0 0 1 0 1 PCK1 chr20:56139538 3'AG 56139538 Downstream 18bp
chr2 241514991 241514991 1 + C T UCEC 241514990 + 241514970 241515010 41 GACTCCTTCCTGAGCTTCTTCCCGGAGCTGAAGGAGCAGAG GACTCCTTCCTGAGCTTCTTCTCGGAGCTGAAGGAGCAGAG < 41bp 0.546241320653255 0.787684051342848 0.91210735 0.55351186 prediction 0.482885461379185 Functional Gain - RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241514990 chr2:241514991 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_110803 0 0 1 0 1 RNPEPL1 chr2:241515027 5'GT 241515027 Upstream 37bp
chr17 45738534 45738534 1 + C A LUAD 45738533 + 45738513 45738553 41 TCTGTGAAGCCACACAGTGTCCAGATACGAGGGTAAGTGTG TCTGTGAAGCCACACAGTGTCAAGATACGAGGGTAAGTGTG < 41bp 0.546857805292834 0.788295497345992 0.3075785 0.57795787 prediction 0.482875384106316 Functional Gain - KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45738533 chr17:45738534 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_110804 0 0 1 0 1 KPNB1 chr17:45738485 3'AG 45738485 Downstream 50bp
chr17 79078475 79078475 1 + C T UCEC 79078474 + 79078454 79078494 41 ACCCTGCTGGTGCCTGAGGCCCGCGATGGCTGGCACTACGG ACCCTGCTGGTGCCTGAGGCCTGCGATGGCTGGCACTACGG < 41bp 0.489928462362363 0.741437365854057 0.18680003 0.1474362 prediction 0.482874731708113 Functional Gain - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79078474 chr17:79078475 nonsynonymous SNV 0.960 4 22 hm5C_associated_SNPs_110805 0 0 1 0 1 BAIAP2 chr17:79078515 5'GT 79078515 Upstream 41bp
chrX 48385628 48385628 1 + C T UCEC 48385627 + 48385607 48385647 41 TGGGTGGTGATCGCCTTTCTCCGCCAGCATCCCCTCCGCTT TGGGTGGTGATCGCCTTTCTCTGCCAGCATCCCCTCCGCTT < 41bp 0.506019672976793 0.74745691886173 0.35450318 0.19572043 prediction 0.482874491769874 Functional Gain - EBP ENSG00000147155 CDS Human protein_coding chrX:48385627 chrX:48385628 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_110806 0 0 1 0 2 EBP chrX:48385543 3'AG 48385543 Downstream 86bp
chrX 48385628 48385628 1 + C T UCEC 48385627 + 48385607 48385647 41 TGGGTGGTGATCGCCTTTCTCCGCCAGCATCCCCTCCGCTT TGGGTGGTGATCGCCTTTCTCTGCCAGCATCCCCTCCGCTT < 41bp 0.506019672976793 0.74745691886173 0.35450318 0.19572043 prediction 0.482874491769874 Functional Gain - EBP ENSG00000147155 CDS Human protein_coding chrX:48385627 chrX:48385628 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_110806 0 0 1 0 2 EBP chrX:48385673 5'GT 48385673 Upstream 46bp
chr2 128390861 128390861 1 + C A HNSC 128390860 + 128390840 128390880 41 CCCCGGAAGCAGCCCCCGCACCAGGTGGAGGTGGAGGCCGC CCCCGGAAGCAGCCCCCGCACAAGGTGGAGGTGGAGGCCGC < 41bp 0.52786278875151 0.769298478248414 0.776817 0.8489312 prediction 0.482871378993809 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128390860 chr2:128390861 nonsynonymous SNV 0.678 1 22 hm5C_associated_SNPs_110808 0 0 0 0 2 MYO7B chr2:128390833 3'AG 128390833 Downstream 29bp
chr2 128390861 128390861 1 + C A HNSC 128390860 + 128390840 128390880 41 CCCCGGAAGCAGCCCCCGCACCAGGTGGAGGTGGAGGCCGC CCCCGGAAGCAGCCCCCGCACAAGGTGGAGGTGGAGGCCGC < 41bp 0.52786278875151 0.769298478248414 0.776817 0.8489312 prediction 0.482871378993809 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128390860 chr2:128390861 nonsynonymous SNV 0.678 1 22 hm5C_associated_SNPs_110808 0 0 0 0 2 MYO7B chr2:128390938 5'GT 128390938 Upstream 78bp
chrX 140985175 140985175 1 + C T LUSC 140985174 + 140985154 140985194 41 TGATTGATGACCAGGGCATGCCCAAGAACTGTCTCCTGATT TGATTGATGACCAGGGCATGCTCAAGAACTGTCTCCTGATT < 41bp 0.495166929016014 0.741426893679512 0.05874154 0.08810726 prediction 0.482853787359024 Functional Gain - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140985174 chrX:140985175 nonsynonymous SNV 0.002 3 22 hm5C_associated_SNPs_110811 0 0 0 0 1 MAGEC3 chrX:140985272 5'GT 140985272 Upstream 98bp
chr22 38087272 38087272 1 + C T UCEC 38087271 + 38087251 38087291 41 GCCCAGGACTCCAAAAAGCCCCCAAGGGCCCCTCGTACCAG GCCCAGGACTCCAAAAAGCCCTCAAGGGCCCCTCGTACCAG < 41bp 0.542709813038235 0.784135246506066 0.05562815 0.030069888 prediction 0.482850866935662 Functional Gain - NOL12 ENSG00000100101 CDS Human protein_coding chr22:38087271 chr22:38087272 nonsynonymous SNV 0.774 1 22 hm5C_associated_SNPs_110812 0 0 1 0 1 NOL12 chr22:38087181 3'AG 38087181 Downstream 92bp
chr12 58015561 58015561 1 + T A LUAD 58015557 + 58015537 58015577 41 TCAGCCTGGCGCTGCTCGTGCCGGTCAAGGAATTGAACGTG TCAGCCTGGCGCTGCTCGTGCCGGACAAGGAATTGAACGTG < 41bp 0.40820481474263 0.74141129950844 0.41687083 0.7753974 prediction 0.482822599016881 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58015557 chr12:58015561 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_110814 0 0 0 0 2 SLC26A10 chr12:58015473 3'AG 58015473 Downstream 89bp
chr12 58015561 58015561 1 + T A LUAD 58015557 + 58015537 58015577 41 TCAGCCTGGCGCTGCTCGTGCCGGTCAAGGAATTGAACGTG TCAGCCTGGCGCTGCTCGTGCCGGACAAGGAATTGAACGTG < 41bp 0.40820481474263 0.74141129950844 0.41687083 0.7753974 prediction 0.482822599016881 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58015557 chr12:58015561 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_110814 0 0 0 0 2 SLC26A10 chr12:58015625 5'GT 58015625 Upstream 65bp
chr9 95773515 95773515 1 + C T SKCM 95773514 + 95773494 95773534 41 AGGGTCCTTGGAGCTCATCTCCACAGCCGCCAACCACTCCA AGGGTCCTTGGAGCTCATCTCTACAGCCGCCAACCACTCCA < 41bp 0.562153311342876 0.803564355687126 0.758071 0.9005896 prediction 0.482822088688499 Functional Gain - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95773514 chr9:95773515 synonymous SNV . 0 22 hm5C_associated_SNPs_110815 0 0 0 0 1 FGD3 chr9:95773554 5'GT 95773554 Upstream 40bp
chr14 77579782 77579782 1 + C G LUSC 77579781 + 77579761 77579801 41 TCTTCAGGGCAGCAGCTCATCCCAGCTCCAGTCGTGGACTG TCTTCAGGGCAGCAGCTCATCGCAGCTCCAGTCGTGGACTG < 41bp 0.623591237940375 0.865001774695654 0.088760346 0.2827868 prediction 0.482821073510558 Functional Gain - CIPC ENSG00000198894 CDS Human protein_coding chr14:77579781 chr14:77579782 nonsynonymous SNV 0.896 1 22 hm5C_associated_SNPs_110817 0 0 1 0 2 CIPC chr14:77579768 3'AG 77579768 Downstream 15bp
chr14 77579782 77579782 1 + C G LUSC 77579781 + 77579761 77579801 41 TCTTCAGGGCAGCAGCTCATCCCAGCTCCAGTCGTGGACTG TCTTCAGGGCAGCAGCTCATCGCAGCTCCAGTCGTGGACTG < 41bp 0.623591237940375 0.865001774695654 0.088760346 0.2827868 prediction 0.482821073510558 Functional Gain - CIPC ENSG00000198894 CDS Human protein_coding chr14:77579781 chr14:77579782 nonsynonymous SNV 0.896 1 22 hm5C_associated_SNPs_110817 0 0 1 0 2 CIPC chr14:77579773 3'AG 77579773 Downstream 10bp
chr16 31339539 31339539 1 + T C LAML 31339537 + 31339517 31339557 41 CCGGTGAAATATGCTGTCTACATGGTGGTCACCAGGTGCTG CCGGTGAAATATGCTGTCTACACGGTGGTCACCAGGTGCTG < 41bp 0.480470370865517 0.741410155822524 0.3401984 0.7312231 prediction 0.482820311645048 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31339537 chr16:31339539 nonsynonymous SNV 0.655 0 23 hm5C_associated_SNPs_110818 0 0 0 0 2 ITGAM chr16:31339468 3'AG 31339468 Downstream 72bp
chr16 31339539 31339539 1 + T C LAML 31339537 + 31339517 31339557 41 CCGGTGAAATATGCTGTCTACATGGTGGTCACCAGGTGCTG CCGGTGAAATATGCTGTCTACACGGTGGTCACCAGGTGCTG < 41bp 0.480470370865517 0.741410155822524 0.3401984 0.7312231 prediction 0.482820311645048 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31339537 chr16:31339539 nonsynonymous SNV 0.655 0 23 hm5C_associated_SNPs_110818 0 0 0 0 2 ITGAM chr16:31339551 5'GT 31339551 Upstream 13bp
chr11 1955022 1955022 1 + C A LIHC 1955021 + 1955001 1955041 41 CATCGACAGCCACTTTGAAGCCCGGAAGAAGGAGGAGGAGG CATCGACAGCCACTTTGAAGCACGGAAGAAGGAGGAGGAGG < 41bp 0.506604981984723 0.748012537795009 0.11264101 0.17369112 prediction 0.482815111620572 Functional Gain - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1955021 chr11:1955022 synonymous SNV . 0 22 hm5C_associated_SNPs_110820 0 0 0 0 2 TNNT3 chr11:1954951 3'AG 1954951 Downstream 72bp
chr11 1955022 1955022 1 + C A LIHC 1955021 + 1955001 1955041 41 CATCGACAGCCACTTTGAAGCCCGGAAGAAGGAGGAGGAGG CATCGACAGCCACTTTGAAGCACGGAAGAAGGAGGAGGAGG < 41bp 0.506604981984723 0.748012537795009 0.11264101 0.17369112 prediction 0.482815111620572 Functional Gain - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1955021 chr11:1955022 synonymous SNV . 0 22 hm5C_associated_SNPs_110820 0 0 0 0 2 TNNT3 chr11:1955067 5'GT 1955067 Upstream 46bp
chr2 190328664 190328664 1 + C T SKCM 190328663 + 190328643 190328683 41 CACCTGCAGTTTTATTCTCTCCAGAGTGATAAACAGTTATA CACCTGCAGTTTTATTCTCTCTAGAGTGATAAACAGTTATA < 41bp 0.522555478628191 0.763954657623484 0.35008055 0.106372595 prediction 0.482798357990586 Functional Gain - WDR75 ENSG00000115368 CDS Human protein_coding chr2:190328663 chr2:190328664 stopgain 0.996 1 22 hm5C_associated_SNPs_110821 0 0 1 0 2 WDR75 chr2:190328572 3'AG 190328572 Downstream 93bp
chr2 190328664 190328664 1 + C T SKCM 190328663 + 190328643 190328683 41 CACCTGCAGTTTTATTCTCTCCAGAGTGATAAACAGTTATA CACCTGCAGTTTTATTCTCTCTAGAGTGATAAACAGTTATA < 41bp 0.522555478628191 0.763954657623484 0.35008055 0.106372595 prediction 0.482798357990586 Functional Gain - WDR75 ENSG00000115368 CDS Human protein_coding chr2:190328663 chr2:190328664 stopgain 0.996 1 22 hm5C_associated_SNPs_110821 0 0 1 0 2 WDR75 chr2:190328687 5'GT 190328687 Upstream 24bp
chr12 2910371 2910371 1 + C G rs143021274 2910367 + 2910347 2910387 41 TGAATGACTTTGAACTGGCACGGGCTGATTTCCAGAAGGTC TGAATGACTTTGAACTGGCACGGGGTGATTTCCAGAAGGTC < 41bp 0.461685216861947 0.741396435942388 0.83810633 0.91755867 prediction 0.482792871884776 Functional Gain - FKBP4 ENSG00000004478 CDS Human protein_coding chr12:2910367 chr12:2910371 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_110822 0 0 1 0 1 FKBP4 chr12:2910283 3'AG 2910283 Downstream 89bp
chr3 50220413 50220413 1 + C T OV 50220412 + 50220392 50220432 41 CGCGGCTCGTCTGCTCTGTCCCGGGCGAGGATGGCATTGAG CGCGGCTCGTCTGCTCTGTCCTGGGCGAGGATGGCATTGAG < 41bp 0.494982465748403 0.741394164111694 0.9035582 0.8535356 prediction 0.482788328223389 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50220412 chr3:50220413 nonsynonymous SNV 0.826 2 22 hm5C_associated_SNPs_110823 0 0 0 0 2 SEMA3F chr3:50220337 3'AG 50220337 Downstream 77bp
chr3 50220413 50220413 1 + C T OV 50220412 + 50220392 50220432 41 CGCGGCTCGTCTGCTCTGTCCCGGGCGAGGATGGCATTGAG CGCGGCTCGTCTGCTCTGTCCTGGGCGAGGATGGCATTGAG < 41bp 0.494982465748403 0.741394164111694 0.9035582 0.8535356 prediction 0.482788328223389 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50220412 chr3:50220413 nonsynonymous SNV 0.826 2 22 hm5C_associated_SNPs_110823 0 0 0 0 2 SEMA3F chr3:50220451 5'GT 50220451 Upstream 39bp
chr17 58506804 58506804 1 + T C LUAD 58506802 + 58506782 58506822 41 TCTGCCCAAGCTCTGCCATGCATGGGGGCTGCACAGCAACA TCTGCCCAAGCTCTGCCATGCACGGGGGCTGCACAGCAACA < 41bp 0.556200286043809 0.79759318452769 0.25204474 0.15003741 prediction 0.482785796967761 Functional Gain - C17orf64 ENSG00000141371 CDS Human protein_coding chr17:58506802 chr17:58506804 nonsynonymous SNV 0.278 4 23 hm5C_associated_SNPs_110824 0 0 0 0 1 C17orf64 chr17:58506723 3'AG 58506723 Downstream 82bp
chr12 3686075 3686075 1 + C T LUAD 3686074 + 3686054 3686094 41 GGCTTTGACATGACCTGCATCCGGGACGTGGCCATGAAGGA GGCTTTGACATGACCTGCATCTGGGACGTGGCCATGAAGGA < 41bp 0.491898947536874 0.741381208247896 0.47107682 0.20087957 prediction 0.482762416495793 Functional Gain - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3686074 chr12:3686075 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_110827 0 0 0 1 1 PRMT8 chr12:3686152 5'GT 3686152 Upstream 78bp
chrX 79282277 79282277 1 + C T SKCM 79282276 + 79282256 79282296 41 AGGCAGCAGTGTTGACCTGTCCCAGATTCAGTCCTTGCCCA AGGCAGCAGTGTTGACCTGTCTCAGATTCAGTCCTTGCCCA < 41bp 0.535195023851899 0.776574595788206 0.05610755 0.057515204 prediction 0.482759143872614 Functional Gain - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79282276 chrX:79282277 synonymous SNV . 0 22 hm5C_associated_SNPs_110828 0 0 0 0 2 TBX22 chrX:79282203 3'AG 79282203 Downstream 75bp
chrX 79282277 79282277 1 + C T SKCM 79282276 + 79282256 79282296 41 AGGCAGCAGTGTTGACCTGTCCCAGATTCAGTCCTTGCCCA AGGCAGCAGTGTTGACCTGTCTCAGATTCAGTCCTTGCCCA < 41bp 0.535195023851899 0.776574595788206 0.05610755 0.057515204 prediction 0.482759143872614 Functional Gain - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79282276 chrX:79282277 synonymous SNV . 0 22 hm5C_associated_SNPs_110828 0 0 0 0 2 TBX22 chrX:79282367 5'GT 79282367 Upstream 91bp
chr19 51983903 51983903 1 + C A LUAD 51983902 + 51983882 51983922 41 GGTGGTTGCAGGCAATGAGACCCAAAGAGCAACCGGCTGGC GGTGGTTGCAGGCAATGAGACACAAAGAGCAACCGGCTGGC < 41bp 0.553591231208169 0.794967585343269 0.19432479 0.22086328 prediction 0.482752708270199 Functional Gain - CEACAM18 ENSG00000213822 CDS Human protein_coding chr19:51983902 chr19:51983903 synonymous SNV . 0 22 hm5C_associated_SNPs_110829 0 0 0 0 1 CEACAM18 chr19:51983934 5'GT 51983934 Upstream 32bp
chr3 195956827 195956827 1 + T C rs17852687 195956825 + 195956805 195956845 41 CTCTATGGATCAACACTTTCCTTGGCGTGTCCACACTGCTG CTCTATGGATCAACACTTTCCTCGGCGTGTCCACACTGCTG < 41bp 0.569125489797774 0.810500118489196 0.22411388 0.32853785 prediction 0.482749257382844 Functional Gain - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195956825 chr3:195956827 synonymous SNV . 0 23 hm5C_associated_SNPs_110830 0 0 1 0 1 SLC51A chr3:195956786 3'AG 195956786 Downstream 42bp
chr6 45480092 45480092 1 + C A OV 45480091 + 45480071 45480111 41 CTCTACCACCCCGCTGTCTTCCACACGGGGCACTGGGCTTC CTCTACCACCCCGCTGTCTTCAACACGGGGCACTGGGCTTC < 41bp 0.540685561777934 0.782055405292308 0.11218268 0.17647627 prediction 0.482739687028748 Functional Gain - RUNX2 ENSG00000124813 CDS Human protein_coding chr6:45480091 chr6:45480092 synonymous SNV . 0 22 hm5C_associated_SNPs_110831 0 0 0 0 1 RUNX2 chr6:45480144 5'GT 45480144 Upstream 53bp
chr12 53819626 53819626 1 + C T UCEC 53819625 + 53819605 53819645 41 CTACAGCACGACCACATTGTCCGATTTATCACTGCCAGCCG CTACAGCACGACCACATTGTCTGATTTATCACTGCCAGCCG < 41bp 0.503790930386959 0.745150693965006 0.16878438 0.1746656 prediction 0.482719527156094 Functional Gain - AMHR2 ENSG00000135409 CDS Human protein_coding chr12:53819625 chr12:53819626 stopgain 0.998 0 22 hm5C_associated_SNPs_110834 0 0 0 0 1 AMHR2 chr12:53819703 5'GT 53819703 Upstream 78bp
chr7 99699579 99699579 1 + C A HNSC 99699578 + 99699558 99699598 41 GGGACTGCCAGGAGACGAGTCCCCGGTTGTCATGGTAACCA GGGACTGCCAGGAGACGAGTCACCGGTTGTCATGGTAACCA < 41bp 0.525980249940103 0.767328820591057 0.13228387 0.080577284 prediction 0.482697141301909 Functional Gain - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99699578 chr7:99699579 synonymous SNV . 0 22 hm5C_associated_SNPs_110838 0 0 1 0 2 AP4M1 chr7:99699503 3'AG 99699503 Downstream 77bp
chr7 99699579 99699579 1 + C A HNSC 99699578 + 99699558 99699598 41 GGGACTGCCAGGAGACGAGTCCCCGGTTGTCATGGTAACCA GGGACTGCCAGGAGACGAGTCACCGGTTGTCATGGTAACCA < 41bp 0.525980249940103 0.767328820591057 0.13228387 0.080577284 prediction 0.482697141301909 Functional Gain - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99699578 chr7:99699579 synonymous SNV . 0 22 hm5C_associated_SNPs_110838 0 0 1 0 2 AP4M1 chr7:99699591 5'GT 99699591 Upstream 13bp
chr3 119222829 119222829 1 + C T UCEC 119222828 + 119222808 119222848 41 AACACTAGTCTGAATGTATACCGAAATAAAGATGCCTTAAG AACACTAGTCTGAATGTATACTGAAATAAAGATGCCTTAAG < 41bp 0.522165396423881 0.763495011208125 0.08807194 0.14323369 prediction 0.482659229568488 Functional Gain - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119222828 chr3:119222829 stopgain 0.986 1 22 hm5C_associated_SNPs_110846 0 0 1 4 2 TIMMDC1 chr3:119222801 3'AG 119222801 Downstream 29bp
chr3 119222829 119222829 1 + C T UCEC 119222828 + 119222808 119222848 41 AACACTAGTCTGAATGTATACCGAAATAAAGATGCCTTAAG AACACTAGTCTGAATGTATACTGAAATAAAGATGCCTTAAG < 41bp 0.522165396423881 0.763495011208125 0.08807194 0.14323369 prediction 0.482659229568488 Functional Gain - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119222828 chr3:119222829 stopgain 0.986 1 22 hm5C_associated_SNPs_110846 0 0 1 4 2 TIMMDC1 chr3:119222868 5'GT 119222868 Upstream 40bp
chrX 101581401 101581401 1 + C T THYM 101581400 + 101581380 101581420 41 CTAGACCGAGGGCAAGATCCCCGCAGAGGCCTTCAAGCAAA CTAGACCGAGGGCAAGATCCCTGCAGAGGCCTTCAAGCAAA < 41bp 0.505490920391382 0.746816567658194 0.31710905 0.35454535 prediction 0.482651294533624 Functional Gain - NXF2;NXF2B ENSG00000185554 CDS Human other chrX:101581400 chrX:101581401 synonymous SNV . 0 22 hm5C_associated_SNPs_110847 0 0 0 0 1 NXF2;NXF2B chrX:101581384 3'AG 101581384 Downstream 18bp
chr20 44642395 44642395 1 + C G rs146961494 44642391 + 44642371 44642411 41 GCTGCCCCGCAAGCTGGACTCGGTCTTTGAGGAGCGGCTCT GCTGCCCCGCAAGCTGGACTCGGTGTTTGAGGAGCGGCTCT < 41bp 0.452386489315838 0.741323161143727 0.7171941 0.816821 prediction 0.482646322287453 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44642391 chr20:44642395 synonymous SNV . 0 25 hm5C_associated_SNPs_110849 0 0 0 0 2 MMP9 chr20:44642296 3'AG 44642296 Downstream 100bp
chr20 44642395 44642395 1 + C G rs146961494 44642391 + 44642371 44642411 41 GCTGCCCCGCAAGCTGGACTCGGTCTTTGAGGAGCGGCTCT GCTGCCCCGCAAGCTGGACTCGGTGTTTGAGGAGCGGCTCT < 41bp 0.452386489315838 0.741323161143727 0.7171941 0.816821 prediction 0.482646322287453 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44642391 chr20:44642395 synonymous SNV . 0 25 hm5C_associated_SNPs_110849 0 0 0 0 2 MMP9 chr20:44642435 5'GT 44642435 Upstream 41bp
chr3 39544313 39544313 1 + T G MESO 39544311 + 39544291 39544331 41 CAACAGCCGCGCAGCAGCCCCCTCAGAGGGCCAGGCGCCAG CAACAGCCGCGCAGCAGCCCCCGCAGAGGGCCAGGCGCCAG < 41bp 0.411070212530502 0.741311865232853 0.27553555 0.37217546 prediction 0.482623730465706 Functional Gain - MOBP ENSG00000168314 CDS Human protein_coding chr3:39544311 chr3:39544313 nonsynonymous SNV 0.460 1 23 hm5C_associated_SNPs_110851 0 0 0 0 2 MOBP chr3:39544367 5'GT 39544367 Upstream 55bp
chr3 39544313 39544313 1 + T G MESO 39544311 + 39544291 39544331 41 CAACAGCCGCGCAGCAGCCCCCTCAGAGGGCCAGGCGCCAG CAACAGCCGCGCAGCAGCCCCCGCAGAGGGCCAGGCGCCAG < 41bp 0.411070212530502 0.741311865232853 0.27553555 0.37217546 prediction 0.482623730465706 Functional Gain - MOBP ENSG00000168314 CDS Human protein_coding chr3:39544311 chr3:39544313 nonsynonymous SNV 0.460 1 23 hm5C_associated_SNPs_110851 0 0 0 0 2 MOBP chr3:39544405 5'GT 39544405 Upstream 93bp
chr1 241725547 241725547 1 + T A STAD 241725543 + 241725523 241725563 41 CCTATTCAACTGTCAGATCTCACCTGATGAAGAAACCTCGC CCTATTCAACTGTCAGATCTCACCAGATGAAGAAACCTCGC < 41bp 0.649936513817548 0.891246868802439 0.2681169 0.5476208 prediction 0.482620709969782 Functional Gain - KMO ENSG00000117009 CDS Human protein_coding chr1:241725543 chr1:241725547 nonsynonymous SNV 0.904 4 25 hm5C_associated_SNPs_110852 0 0 0 0 2 KMO chr1:241725467 3'AG 241725467 Downstream 81bp
chr1 241725547 241725547 1 + T A STAD 241725543 + 241725523 241725563 41 CCTATTCAACTGTCAGATCTCACCTGATGAAGAAACCTCGC CCTATTCAACTGTCAGATCTCACCAGATGAAGAAACCTCGC < 41bp 0.649936513817548 0.891246868802439 0.2681169 0.5476208 prediction 0.482620709969782 Functional Gain - KMO ENSG00000117009 CDS Human protein_coding chr1:241725543 chr1:241725547 nonsynonymous SNV 0.904 4 25 hm5C_associated_SNPs_110852 0 0 0 0 2 KMO chr1:241725632 5'GT 241725632 Upstream 86bp
chr6 25606472 25606472 1 + C T BLCA 25606471 + 25606451 25606491 41 TGGCAGCACGGCCCGTCATCCCGCAGAAACCAAGAACCGCC TGGCAGCACGGCCCGTCATCCTGCAGAAACCAAGAACCGCC < 41bp 0.546909705643951 0.788209811445082 0.22471789 0.203872 prediction 0.482600211602262 Functional Gain - CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25606471 chr6:25606472 nonsynonymous SNV 0.270 2 22 hm5C_associated_SNPs_110855 0 0 0 0 1 CARMIL1 chr6:25606501 5'GT 25606501 Upstream 30bp
chr20 44003715 44003715 1 - G A LUAD 44003716 - 44003696 44003736 41 CCGCTGCACCCGCTTCTGCTCCGCATCACTTGAAATGCCTA CCGCTGCACCCGCTTCTGCTCTGCATCACTTGAAATGCCTA < 41bp 0.530335812810079 0.771635882856269 0.038908005 0.08957639 prediction 0.482600140092379 Functional Gain - TP53TG5 ENSG00000124251 CDS Human protein_coding chr20:44003716 chr20:44003715 synonymous SNV . 0 22 hm5C_associated_SNPs_110856 0 0 0 0 1 TP53TG5 chr20:44003679 5'GT 44003679 Upstream 37bp
chr19 1042809 1042809 1 + A G rs3764645 1042806 + 1042786 1042826 41 GCACAGCTTGTTGGAGGCCGCTGAGGACCTGGCCCAGGAGG GCACAGCTTGTTGGAGGCCGCTGGGGACCTGGCCCAGGAGG < 41bp 0.498263841323216 0.741299096592045 0.85344183 0.9095678 prediction 0.48259819318409 Functional Gain - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1042806 chr19:1042809 nonsynonymous SNV 0.118 1 24 hm5C_associated_SNPs_110857 0 0 1 0 2 ABCA7 chr19:1042745 3'AG 1042745 Downstream 65bp
chr19 1042809 1042809 1 + A G rs3764645 1042806 + 1042786 1042826 41 GCACAGCTTGTTGGAGGCCGCTGAGGACCTGGCCCAGGAGG GCACAGCTTGTTGGAGGCCGCTGGGGACCTGGCCCAGGAGG < 41bp 0.498263841323216 0.741299096592045 0.85344183 0.9095678 prediction 0.48259819318409 Functional Gain - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1042806 chr19:1042809 nonsynonymous SNV 0.118 1 24 hm5C_associated_SNPs_110857 0 0 1 0 2 ABCA7 chr19:1042825 5'GT 1042825 Upstream 17bp
chr19 55481501 55481501 1 + C A LUAD 55481500 + 55481480 55481520 41 TTCTCCCTGGCACACGAGCTCCAGAAGATCCCCCACAAGGA TTCTCCCTGGCACACGAGCTCAAGAAGATCCCCCACAAGGA < 41bp 0.549498636164695 0.790797004734215 0.64096487 0.54958445 prediction 0.48259673713904 Functional Gain - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55481500 chr19:55481501 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_110858 0 0 0 0 1 NLRP2 chr19:55481521 5'GT 55481521 Upstream 21bp
chr9 138413417 138413417 1 + A G KIRC 138413414 + 138413394 138413434 41 GGCCCACCACCTCCTGGCCTCAGACGAGGAGATTCAGGATG GGCCCACCACCTCCTGGCCTCAGGCGAGGAGATTCAGGATG < 41bp 0.506079573841058 0.747372475325761 0.84822124 0.90293866 prediction 0.482585802969407 Functional Gain - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138413414 chr9:138413417 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_110859 0 0 0 0 1 LCN1 chr9:138413433 5'GT 138413433 Upstream 17bp
chr2 211454912 211454912 1 + C A LUAD 211454911 + 211454891 211454931 41 GGATTTTGATCGCGGGAGGACCGGGGAACCCAGCTCTTGCA GGATTTTGATCGCGGGAGGACAGGGGAACCCAGCTCTTGCA < 41bp 0.483740020591604 0.741292464548821 0.91869557 0.91326123 prediction 0.482584929097642 Functional Gain - CPS1 ENSG00000021826 CDS Human protein_coding chr2:211454911 chr2:211454912 nonsynonymous SNV 0.367 5 22 hm5C_associated_SNPs_110860 0 0 1 0 2 CPS1 chr2:211454830 3'AG 211454830 Downstream 83bp
chr2 211454912 211454912 1 + C A LUAD 211454911 + 211454891 211454931 41 GGATTTTGATCGCGGGAGGACCGGGGAACCCAGCTCTTGCA GGATTTTGATCGCGGGAGGACAGGGGAACCCAGCTCTTGCA < 41bp 0.483740020591604 0.741292464548821 0.91869557 0.91326123 prediction 0.482584929097642 Functional Gain - CPS1 ENSG00000021826 CDS Human protein_coding chr2:211454911 chr2:211454912 nonsynonymous SNV 0.367 5 22 hm5C_associated_SNPs_110860 0 0 1 0 2 CPS1 chr2:211454958 5'GT 211454958 Upstream 47bp
chr1 40874380 40874380 1 + C A STAD 40874379 + 40874359 40874399 41 GACTTTATGAAGCCTATCTTCCTGAGACCTTTCGGCGACCT GACTTTATGAAGCCTATCTTCATGAGACCTTTCGGCGACCT < 41bp 0.533214017303507 0.774505673061828 0.17669678 0.5907136 prediction 0.482583311516641 Functional Gain - SMAP2 ENSG00000084070 CDS Human protein_coding chr1:40874379 chr1:40874380 nonsynonymous SNV 0.982 4 22 hm5C_associated_SNPs_110861 0 0 1 0 2 SMAP2 chr1:40874325 3'AG 40874325 Downstream 56bp
chr1 40874380 40874380 1 + C A STAD 40874379 + 40874359 40874399 41 GACTTTATGAAGCCTATCTTCCTGAGACCTTTCGGCGACCT GACTTTATGAAGCCTATCTTCATGAGACCTTTCGGCGACCT < 41bp 0.533214017303507 0.774505673061828 0.17669678 0.5907136 prediction 0.482583311516641 Functional Gain - SMAP2 ENSG00000084070 CDS Human protein_coding chr1:40874379 chr1:40874380 nonsynonymous SNV 0.982 4 22 hm5C_associated_SNPs_110861 0 0 1 0 2 SMAP2 chr1:40874410 5'GT 40874410 Upstream 31bp
chr19 49842105 49842105 1 + C T rs200739819 49842104 + 49842084 49842124 41 TCCTAGATAAGGTGATCTTGCCCCAGCTCAGCAGGCTTGGA TCCTAGATAAGGTGATCTTGCTCCAGCTCAGCAGGCTTGGA < 41bp 0.556819995476555 0.798101841196381 0.06465298 0.30787802 prediction 0.482563691439652 Functional Gain - CD37 ENSG00000104894 CDS Human protein_coding chr19:49842104 chr19:49842105 nonsynonymous SNV 0.032 1 22 hm5C_associated_SNPs_110865 0 0 1 2 1 CD37 chr19:49842193 5'GT 49842193 Upstream 89bp
chr1 156142773 156142773 1 + C A COAD 156142769 + 156142749 156142789 41 GCCCAGGGCCTTGATGGGCACAGCCATCTTGTCATGTACCT GCCCAGGGCCTTGATGGGCACAGCAATCTTGTCATGTACCT < 41bp 0.318107757993233 0.741277817198407 0.11617458 0.18196338 prediction 0.482555634396814 Functional Gain - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156142769 chr1:156142773 nonsynonymous SNV 0.913 1 25 hm5C_associated_SNPs_110866 0 0 0 0 1 SEMA4A chr1:156142797 5'GT 156142797 Upstream 25bp
chr6 150263229 150263229 1 + C A HNSC 150263228 + 150263208 150263248 41 AATGGCAGCAGCCGCCGCTACCAAGATCCTTCTGTGCCTCC AATGGCAGCAGCCGCCGCTACAAAGATCCTTCTGTGCCTCC < 41bp 0.500202947733407 0.741473297415961 0.5262011 0.59691304 prediction 0.482540699365108 Functional Gain - ULBP2 ENSG00000131015 CDS Human protein_coding chr6:150263228 chr6:150263229 synonymous SNV . 0 22 hm5C_associated_SNPs_110869 0 0 0 0 1 ULBP2 chr6:150263293 5'GT 150263293 Upstream 65bp
chr11 68315653 68315653 1 + C A COAD 68315649 + 68315629 68315669 41 TGACGTGTATCGAACCTCCACAGCCCAGGCAAGATGTGCTG TGACGTGTATCGAACCTCCACAGCACAGGCAAGATGTGCTG < 41bp 0.327744322206052 0.741258992552449 0.009547085 0.021681428 prediction 0.482517985104898 Functional Gain - PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68315649 chr11:68315653 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_110872 0 0 1 0 1 PPP6R3 chr11:68315672 5'GT 68315672 Upstream 20bp
chr16 89656320 89656320 1 + C T STAD 89656319 + 89656299 89656339 41 TTCCAGTGACAAGAGGTTTTCCGCTTTGGGGTTTGGAGCCC TTCCAGTGACAAGAGGTTTTCTGCTTTGGGGTTTGGAGCCC < 41bp 0.491378102977694 0.741245094567223 0.113084644 0.15443006 prediction 0.482490189134446 Functional Gain - CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89656319 chr16:89656320 synonymous SNV . 0 22 hm5C_associated_SNPs_110877 0 0 1 0 2 CPNE7 chr16:89656305 3'AG 89656305 Downstream 16bp
chr16 89656320 89656320 1 + C T STAD 89656319 + 89656299 89656339 41 TTCCAGTGACAAGAGGTTTTCCGCTTTGGGGTTTGGAGCCC TTCCAGTGACAAGAGGTTTTCTGCTTTGGGGTTTGGAGCCC < 41bp 0.491378102977694 0.741245094567223 0.113084644 0.15443006 prediction 0.482490189134446 Functional Gain - CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89656319 chr16:89656320 synonymous SNV . 0 22 hm5C_associated_SNPs_110877 0 0 1 0 2 CPNE7 chr16:89656359 5'GT 89656359 Upstream 40bp
chr16 72046117 72046117 1 + C A COAD 72046116 + 72046096 72046136 41 CTGGCTGTTCGCTTCACCTCCCTGGGGCTCCTTCCACGGGC CTGGCTGTTCGCTTCACCTCCATGGGGCTCCTTCCACGGGC < 41bp 0.475763419686932 0.741237820410224 0.3744311 0.76587516 prediction 0.482475640820447 Functional Gain - DHODH ENSG00000102967 CDS Human protein_coding chr16:72046116 chr16:72046117 nonsynonymous SNV 0.848 2 22 hm5C_associated_SNPs_110879 0 0 1 0 1 DHODH chr16:72046161 5'GT 72046161 Upstream 45bp
chr16 87426041 87426041 1 + C A rs536459957 87426037 + 87426017 87426057 41 GCCCAGATCCCTGCACCATGCCGTCGGAGAAGACCTTCAAG GCCCAGATCCCTGCACCATGCCGTAGGAGAAGACCTTCAAG < 41bp 0.362493448497417 0.741227748770052 0.087016225 0.23996547 prediction 0.482455497540104 Functional Gain - MAP1LC3B ENSG00000140941 CDS Human protein_coding chr16:87426037 chr16:87426041 stopgain 0.998 0 25 hm5C_associated_SNPs_110882 0 0 1 0 1 MAP1LC3B chr16:87426073 5'GT 87426073 Upstream 33bp
chr2 239258005 239258005 1 + C A rs548950530 239258004 + 239257984 239258024 41 GAGTGCAAGACCAGCCCCTCCCCGGGTCAAACGGCAAGACA GAGTGCAAGACCAGCCCCTCCACGGGTCAAACGGCAAGACA < 41bp 0.544174711065229 0.785396313891048 0.7098714 0.20468909 prediction 0.482443205651638 Functional Gain - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239258004 chr2:239258005 synonymous SNV . 0 22 hm5C_associated_SNPs_110884 0 0 1 0 2 TRAF3IP1 chr2:239257966 3'AG 239257966 Downstream 40bp
chr2 239258005 239258005 1 + C A rs548950530 239258004 + 239257984 239258024 41 GAGTGCAAGACCAGCCCCTCCCCGGGTCAAACGGCAAGACA GAGTGCAAGACCAGCCCCTCCACGGGTCAAACGGCAAGACA < 41bp 0.544174711065229 0.785396313891048 0.7098714 0.20468909 prediction 0.482443205651638 Functional Gain - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239258004 chr2:239258005 synonymous SNV . 0 22 hm5C_associated_SNPs_110884 0 0 1 0 2 TRAF3IP1 chr2:239258049 5'GT 239258049 Upstream 45bp
chr5 7695918 7695918 1 + C T COAD 7695917 + 7695897 7695937 41 GGCTGGCAAGTGACTGCTCCCCGGGAGAACTAGTCCACATG GGCTGGCAAGTGACTGCTCCCTGGGAGAACTAGTCCACATG < 41bp 0.508773260225374 0.749987814842337 0.9187569 0.73182654 prediction 0.482429109233925 Functional Gain - ADCY2 ENSG00000078295 CDS Human protein_coding chr5:7695917 chr5:7695918 nonsynonymous SNV 0.765 5 22 hm5C_associated_SNPs_110888 0 0 0 0 2 ADCY2 chr5:7695865 3'AG 7695865 Downstream 54bp
chr5 7695918 7695918 1 + C T COAD 7695917 + 7695897 7695937 41 GGCTGGCAAGTGACTGCTCCCCGGGAGAACTAGTCCACATG GGCTGGCAAGTGACTGCTCCCTGGGAGAACTAGTCCACATG < 41bp 0.508773260225374 0.749987814842337 0.9187569 0.73182654 prediction 0.482429109233925 Functional Gain - ADCY2 ENSG00000078295 CDS Human protein_coding chr5:7695917 chr5:7695918 nonsynonymous SNV 0.765 5 22 hm5C_associated_SNPs_110888 0 0 0 0 2 ADCY2 chr5:7695976 5'GT 7695976 Upstream 59bp
chr12 66725005 66725005 1 + C T UCEC 66725004 + 66724984 66725024 41 GCACTGGCAGCATGTCTACACCGCCGTGACCAGGGGCCGCT GCACTGGCAGCATGTCTACACTGCCGTGACCAGGGGCCGCT < 41bp 0.510835403123794 0.752049712226889 0.01568392 0.025752604 prediction 0.482428618206188 Functional Gain - HELB ENSG00000127311 CDS Human protein_coding chr12:66725004 chr12:66725005 synonymous SNV . 0 22 hm5C_associated_SNPs_110889 0 0 0 0 1 HELB chr12:66724934 3'AG 66724934 Downstream 72bp
chr7 140378994 140378994 1 + C T SKCM 140378993 + 140378973 140379013 41 GCTCAGAATCTAGAACACTTCCAGGTCAACTTCCGGAATGT GCTCAGAATCTAGAACACTTCTAGGTCAACTTCCGGAATGT < 41bp 0.524545994368323 0.765733823455852 0.3924808 0.40330812 prediction 0.482375658175057 Functional Gain - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140378993 chr7:140378994 stopgain 0.941 0 22 hm5C_associated_SNPs_110891 0 0 1 0 2 ADCK2 chr7:140378955 3'AG 140378955 Downstream 40bp
chr7 140378994 140378994 1 + C T SKCM 140378993 + 140378973 140379013 41 GCTCAGAATCTAGAACACTTCCAGGTCAACTTCCGGAATGT GCTCAGAATCTAGAACACTTCTAGGTCAACTTCCGGAATGT < 41bp 0.524545994368323 0.765733823455852 0.3924808 0.40330812 prediction 0.482375658175057 Functional Gain - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140378993 chr7:140378994 stopgain 0.941 0 22 hm5C_associated_SNPs_110891 0 0 1 0 2 ADCK2 chr7:140379083 5'GT 140379083 Upstream 90bp
chr16 23700836 23700836 1 + C T UCEC 23700835 + 23700815 23700855 41 ATCACCCTCCTTAAATATTTCCGCAATTACATGAGCGAGCA ATCACCCTCCTTAAATATTTCTGCAATTACATGAGCGAGCA < 41bp 0.474409405461252 0.741183263194652 0.095801055 0.21497267 prediction 0.482366526389304 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700835 chr16:23700836 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_110893 0 0 1 0 1 PLK1 chr16:23700815 3'AG 23700815 Downstream 22bp
chr22 45221404 45221404 1 + C G rs74393756 45221403 + 45221383 45221423 41 GCCTGCACGAGGGCCGGACGCCGCCTCCCACCAAGACACCA GCCTGCACGAGGGCCGGACGCGGCCTCCCACCAAGACACCA < 41bp 0.421581841644208 0.741181915847626 0.62023747 0.9196006 prediction 0.482363831695253 Functional Gain - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45221403 chr22:45221404 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_110894 0 0 0 0 2 ARHGAP8;PRR5-ARHGAP8 chr22:45221363 3'AG 45221363 Downstream 42bp
chr22 45221404 45221404 1 + C G rs74393756 45221403 + 45221383 45221423 41 GCCTGCACGAGGGCCGGACGCCGCCTCCCACCAAGACACCA GCCTGCACGAGGGCCGGACGCGGCCTCCCACCAAGACACCA < 41bp 0.421581841644208 0.741181915847626 0.62023747 0.9196006 prediction 0.482363831695253 Functional Gain - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45221403 chr22:45221404 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_110894 0 0 0 0 2 ARHGAP8;PRR5-ARHGAP8 chr22:45221473 5'GT 45221473 Upstream 70bp
chr2 1499899 1499899 1 + C A rs732608 1499898 + 1499878 1499918 41 CTTCCAAGTCGGCAAATTCCCCGAAGACTTTGAGTCTTGTG CTTCCAAGTCGGCAAATTCCCAGAAGACTTTGAGTCTTGTG < 41bp 0.549612906685485 0.790767776704207 0.03400117 0.2973628 prediction 0.482309740037442 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1499898 chr2:1499899 synonymous SNV . 0 22 hm5C_associated_SNPs_110902 0 0 0 0 1 TPO chr2:1499969 5'GT 1499969 Upstream 71bp
chr3 40223808 40223808 1 + C A rs144807590 40223807 + 40223787 40223827 41 CAAGGGACCAAGGCCAACACCCGAGAGCAGAGTCTGCTCTG CAAGGGACCAAGGCCAACACCAGAGAGCAGAGTCTGCTCTG < 41bp 0.489799194631651 0.741147911323199 0.16833374 0.83240277 prediction 0.482295822646398 Functional Gain - MYRIP ENSG00000170011 CDS Human protein_coding chr3:40223807 chr3:40223808 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_110905 0 0 0 0 2 MYRIP chr3:40223711 3'AG 40223711 Downstream 98bp
chr3 40223808 40223808 1 + C A rs144807590 40223807 + 40223787 40223827 41 CAAGGGACCAAGGCCAACACCCGAGAGCAGAGTCTGCTCTG CAAGGGACCAAGGCCAACACCAGAGAGCAGAGTCTGCTCTG < 41bp 0.489799194631651 0.741147911323199 0.16833374 0.83240277 prediction 0.482295822646398 Functional Gain - MYRIP ENSG00000170011 CDS Human protein_coding chr3:40223807 chr3:40223808 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_110905 0 0 0 0 2 MYRIP chr3:40223864 5'GT 40223864 Upstream 57bp
chr3 25833291 25833291 1 + C T STAD 25833290 + 25833270 25833310 41 TCTGAGCACAAACTCAGATCCCAAGTTGGCATGTCGACCAT TCTGAGCACAAACTCAGATCCTAAGTTGGCATGTCGACCAT < 41bp 0.521258971628089 0.76239266665023 0.037321687 0.030158311 prediction 0.482267390044281 Functional Gain - OXSM ENSG00000151093 CDS Human protein_coding chr3:25833290 chr3:25833291 synonymous SNV . 0 22 hm5C_associated_SNPs_110909 0 0 1 0 1 OXSM chr3:25833261 3'AG 25833261 Downstream 31bp
chr1 113232098 113232098 1 + C T UCEC 113232097 + 113232077 113232117 41 GTCCAGGGGCCCCATGAAGCCCGAGATGGGCAGCTCCTTAT GTCCAGGGGCCCCATGAAGCCTGAGATGGGCAGCTCCTTAT < 41bp 0.505811859362112 0.746944133684563 0.25849944 0.1590493 prediction 0.482264548644901 Functional Gain - MOV10 ENSG00000155363 CDS Human protein_coding chr1:113232097 chr1:113232098 stopgain 1.000 0 22 hm5C_associated_SNPs_110910 0 0 1 0 1 MOV10 chr1:113232037 3'AG 113232037 Downstream 62bp
chr1 160326468 160326468 1 + A G STAD 160326465 + 160326445 160326485 41 TGTTGTACAGTATGCCTTGGCAAATTTGACTGGCACAGTGG TGTTGTACAGTATGCCTTGGCAAGTTTGACTGGCACAGTGG < 41bp 0.511862860937681 0.752981935366845 0.27089673 0.36010087 prediction 0.482238148858328 Functional Gain - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160326465 chr1:160326468 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_110915 0 0 1 0 2 NCSTN chr1:160326390 3'AG 160326390 Downstream 79bp
chr1 160326468 160326468 1 + A G STAD 160326465 + 160326445 160326485 41 TGTTGTACAGTATGCCTTGGCAAATTTGACTGGCACAGTGG TGTTGTACAGTATGCCTTGGCAAGTTTGACTGGCACAGTGG < 41bp 0.511862860937681 0.752981935366845 0.27089673 0.36010087 prediction 0.482238148858328 Functional Gain - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160326465 chr1:160326468 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_110915 0 0 1 0 2 NCSTN chr1:160326544 5'GT 160326544 Upstream 77bp
chr19 5654419 5654419 1 + C T UCEC 5654418 + 5654398 5654438 41 GACTGTAGTAATGGATAAATCCAAAGGGGTGCCTGTGATTA GACTGTAGTAATGGATAAATCTAAAGGGGTGCCTGTGATTA < 41bp 0.549791465403888 0.790894302614318 0.22355014 0.052309513 prediction 0.48220567442086 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5654418 chr19:5654419 synonymous SNV . 0 22 hm5C_associated_SNPs_110917 0 0 1 0 1 SAFB chr19:5654379 3'AG 5654379 Downstream 41bp
chr7 66660264 66660264 1 + C T SKCM 66660263 + 66660243 66660283 41 CGAGTTGGTGGATCTGATCCCCGAATATGAAATTGCATGTG CGAGTTGGTGGATCTGATCCCTGAATATGAAATTGCATGTG < 41bp 0.521203161229389 0.76229773790546 0.16462138 0.117194176 prediction 0.482189153352142 Functional Gain - TYW1 ENSG00000198874 CDS Human protein_coding chr7:66660263 chr7:66660264 synonymous SNV . 0 22 hm5C_associated_SNPs_110920 0 0 0 0 1 TYW1 chr7:66660324 5'GT 66660324 Upstream 61bp
chr17 61620942 61620942 1 + C A rs183418801 61620938 + 61620918 61620958 41 CCCTCTTGCTTCCCATAAGGCAGCCGGGGGTCTCCACTCAT CCCTCTTGCTTCCCATAAGGCAGCAGGGGGTCTCCACTCAT < 41bp 0.323601745280742 0.741093101004442 0.09909561 0.17026097 prediction 0.482186202008883 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61620938 chr17:61620942 synonymous SNV . 0 25 hm5C_associated_SNPs_110921 0 0 0 0 2 KCNH6 chr17:61620937 3'AG 61620937 Downstream 6bp
chr17 61620942 61620942 1 + C A rs183418801 61620938 + 61620918 61620958 41 CCCTCTTGCTTCCCATAAGGCAGCCGGGGGTCTCCACTCAT CCCTCTTGCTTCCCATAAGGCAGCAGGGGGTCTCCACTCAT < 41bp 0.323601745280742 0.741093101004442 0.09909561 0.17026097 prediction 0.482186202008883 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61620938 chr17:61620942 synonymous SNV . 0 25 hm5C_associated_SNPs_110921 0 0 0 0 2 KCNH6 chr17:61621021 5'GT 61621021 Upstream 80bp
chr5 137765649 137765649 1 + C T CESC 137765648 + 137765628 137765668 41 GAGAAGATCCGGGAGCTGCTCCGAAAGGTACGCCCCTGGGT GAGAAGATCCGGGAGCTGCTCTGAAAGGTACGCCCCTGGGT < 41bp 0.492081127073755 0.741087782818685 0.20263311 0.12174708 prediction 0.482175565637371 Functional Gain - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137765648 chr5:137765649 stopgain 0.901 1 22 hm5C_associated_SNPs_110922 0 0 1 0 1 KDM3B chr5:137765654 5'GT 137765654 Upstream 6bp
chr19 55106389 55106389 1 + C A LUSC 55106388 + 55106368 55106408 41 CACTGCAGGCTGGTCAGAGCCCAGTGACCCCCTGGAGCTGG CACTGCAGGCTGGTCAGAGCCAAGTGACCCCCTGGAGCTGG < 41bp 0.55506673497956 0.796136418818716 0.14340496 0.3640483 prediction 0.482139367678312 Functional Gain - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55106388 chr19:55106389 synonymous SNV . 0 22 hm5C_associated_SNPs_110926 0 0 0 0 1 LILRA1 chr19:55106417 5'GT 55106417 Upstream 29bp
chr15 63594645 63594645 1 + C T UCEC 63594644 + 63594624 63594664 41 GGCATCCTCCTTATCGTTCTCCTGACCCACCTGCTGGTGTC GGCATCCTCCTTATCGTTCTCTTGACCCACCTGCTGGTGTC < 41bp 0.539533223389516 0.780597888984822 0.41363972 0.3401092 prediction 0.482129331190613 Functional Gain - APH1B ENSG00000138613 CDS Human protein_coding chr15:63594644 chr15:63594645 synonymous SNV . 0 22 hm5C_associated_SNPs_110927 0 0 0 0 1 APH1B chr15:63594671 5'GT 63594671 Upstream 27bp
chr14 24970795 24970795 1 + T G rs139902039 24970792 + 24970772 24970812 41 GTGGCTCTGGTGACAACTCACTCTGTTCTCATGGTCACAAA GTGGCTCTGGTGACAACTCACTCGGTTCTCATGGTCACAAA < 41bp 0.366388633745615 0.741056806505777 0.044786006 0.093104154 prediction 0.482113613011554 Functional Gain - LOC101927045 ENSG00000258744 upstream Human antisense chr14:24970792 chr14:24970795 . . 0 24 hm5C_associated_SNPs_110929 0 0 0 0 1 LOC101927045 chr14:24970766 3'AG 24970766 Downstream 30bp
chr7 141722133 141722133 1 + C A LUAD 141722129 + 141722109 141722149 41 TCTTGCAGCTCTCCACTCGACTGCCTAGCACTAACGTGTAT TCTTGCAGCTCTCCACTCGACTGCATAGCACTAACGTGTAT < 41bp 0.317258750556313 0.741048048372182 0.015366405 0.06711796 prediction 0.482096096744364 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141722129 chr7:141722133 nonsynonymous SNV 0.763 5 25 hm5C_associated_SNPs_110932 0 0 0 0 1 MGAM chr7:141722068 3'AG 141722068 Downstream 66bp
chr5 96078410 96078410 1 + C A THCA 96078406 + 96078386 96078426 41 GCTCTGTCGGCTTCACTGGGCACCCGGCAAGCAGAACCTGA GCTCTGTCGGCTTCACTGGGCACCAGGCAAGCAGAACCTGA < 41bp 0.376919412255552 0.741046289450542 0.079364896 0.16816801 prediction 0.482092578901084 Functional Gain - CAST ENSG00000153113 CDS Human protein_coding chr5:96078406 chr5:96078410 synonymous SNV . 0 25 hm5C_associated_SNPs_110933 0 0 1 0 1 CAST chr5:96078359 3'AG 96078359 Downstream 52bp
chr12 57920935 57920935 1 + C A rs76917839 57920931 + 57920911 57920951 41 CCTACTTTTCCCCCCACTTTCAGCCCCCCCTACCCTCATAG CCTACTTTTCCCCCCACTTTCAGCACCCCCTACCCTCATAG < 41bp 0.31856221659314 0.741043506623332 0.32734096 0.28619868 prediction 0.482087013246664 Functional Gain - MBD6 ENSG00000166987 CDS Human protein_coding chr12:57920931 chr12:57920935 synonymous SNV . 0 25 hm5C_associated_SNPs_110935 0 0 1 0 1 MBD6 chr12:57921010 5'GT 57921010 Upstream 76bp
chr10 1043184 1043184 1 + C T GBM 1043183 + 1043163 1043203 41 CCCGTTTGCCAACCATTGATCCGAATACCAGGACCCTGCTT CCCGTTTGCCAACCATTGATCTGAATACCAGGACCCTGCTT < 41bp 0.493435825808038 0.741036493311204 0.59719604 0.06076768 prediction 0.482072986622409 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1043183 chr10:1043184 nonsynonymous SNV 0.800 4 22 hm5C_associated_SNPs_110937 0 0 1 0 2 GTPBP4 chr10:1043148 3'AG 1043148 Downstream 37bp
chr10 1043184 1043184 1 + C T GBM 1043183 + 1043163 1043203 41 CCCGTTTGCCAACCATTGATCCGAATACCAGGACCCTGCTT CCCGTTTGCCAACCATTGATCTGAATACCAGGACCCTGCTT < 41bp 0.493435825808038 0.741036493311204 0.59719604 0.06076768 prediction 0.482072986622409 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1043183 chr10:1043184 nonsynonymous SNV 0.800 4 22 hm5C_associated_SNPs_110937 0 0 1 0 2 GTPBP4 chr10:1043248 5'GT 1043248 Upstream 65bp
chrX 48371045 48371045 1 + T G CESC 48371042 + 48371022 48371062 41 CTGCTGTGCCTTGTGCTGTCCACTTGCGTGGGCCCCTACCT CTGCTGTGCCTTGTGCTGTCCACGTGCGTGGGCCCCTACCT < 41bp 0.343437190298894 0.741035847493611 0.061764777 0.31155992 prediction 0.482071694987222 Functional Gain - PORCN ENSG00000102312 CDS Human protein_coding chrX:48371042 chrX:48371045 synonymous SNV . 0 24 hm5C_associated_SNPs_110938 0 0 1 0 2 PORCN chrX:48370977 3'AG 48370977 Downstream 69bp
chrX 48371045 48371045 1 + T G CESC 48371042 + 48371022 48371062 41 CTGCTGTGCCTTGTGCTGTCCACTTGCGTGGGCCCCTACCT CTGCTGTGCCTTGTGCTGTCCACGTGCGTGGGCCCCTACCT < 41bp 0.343437190298894 0.741035847493611 0.061764777 0.31155992 prediction 0.482071694987222 Functional Gain - PORCN ENSG00000102312 CDS Human protein_coding chrX:48371042 chrX:48371045 synonymous SNV . 0 24 hm5C_associated_SNPs_110938 0 0 1 0 2 PORCN chrX:48371107 5'GT 48371107 Upstream 63bp
chr16 31384678 31384678 1 + A G UCEC 31384675 + 31384655 31384695 41 ACCATCACCTTCTCCCACCCCGCAGGACTGTCCTACCGCTA ACCATCACCTTCTCCCACCCCGCGGGACTGTCCTACCGCTA < 41bp 0.523159237530616 0.764193955036816 0.055823 0.16295925 prediction 0.482069435012399 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31384675 chr16:31384678 synonymous SNV . 0 24 hm5C_associated_SNPs_110939 0 0 0 0 1 ITGAX chr16:31384711 5'GT 31384711 Upstream 34bp
chr1 11715921 11715921 1 + C A COAD 11715920 + 11715900 11715940 41 TGGGGAACATCAACGAGCTGCCCGAGAACATCCTGCTGGAG TGGGGAACATCAACGAGCTGCACGAGAACATCCTGCTGGAG < 41bp 0.544875958165456 0.785904428325384 0.121516675 0.25829327 prediction 0.482056940319856 Functional Gain - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11715920 chr1:11715921 nonsynonymous SNV 0.973 5 22 hm5C_associated_SNPs_110941 0 0 0 0 1 FBXO44 chr1:11715863 3'AG 11715863 Downstream 59bp
chr3 51680315 51680315 1 + T C rs150924278 51680313 + 51680293 51680333 41 GTCCCCAGGAGCCTTTCGAGCATGAGTCATTGCTCTTGAAC GTCCCCAGGAGCCTTTCGAGCACGAGTCATTGCTCTTGAAC < 41bp 0.451734805100035 0.741026630512505 0.547084 0.36419082 prediction 0.48205326102501 Functional Gain - RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51680313 chr3:51680315 synonymous SNV . 0 23 hm5C_associated_SNPs_110944 0 0 0 0 1 RAD54L2 chr3:51680301 3'AG 51680301 Downstream 15bp
chr12 109293201 109293201 1 + C G OV 109293200 + 109293180 109293220 41 GGCTTCCGGCCAGTACGCCCCCAGATTCGGCTAGAAAGAGA GGCTTCCGGCCAGTACGCCCCGAGATTCGGCTAGAAAGAGA < 41bp 0.413042447949315 0.741009368489053 0.15625468 0.90684116 prediction 0.482018736978105 Functional Gain - DAO ENSG00000110887 CDS Human protein_coding chr12:109293200 chr12:109293201 nonsynonymous SNV 0.450 1 22 hm5C_associated_SNPs_110949 0 0 0 0 2 DAO chr12:109293153 3'AG 109293153 Downstream 49bp
chr12 109293201 109293201 1 + C G OV 109293200 + 109293180 109293220 41 GGCTTCCGGCCAGTACGCCCCCAGATTCGGCTAGAAAGAGA GGCTTCCGGCCAGTACGCCCCGAGATTCGGCTAGAAAGAGA < 41bp 0.413042447949315 0.741009368489053 0.15625468 0.90684116 prediction 0.482018736978105 Functional Gain - DAO ENSG00000110887 CDS Human protein_coding chr12:109293200 chr12:109293201 nonsynonymous SNV 0.450 1 22 hm5C_associated_SNPs_110949 0 0 0 0 2 DAO chr12:109293251 5'GT 109293251 Upstream 51bp
chr10 71683590 71683590 1 + C T SKCM 71683589 + 71683569 71683609 41 TGTCGATGGCCAGGTTGGCCCCCCAGGGCAGCCAGGAGACA TGTCGATGGCCAGGTTGGCCCTCCAGGGCAGCCAGGAGACA < 41bp 0.479284276282855 0.741006994590173 0.17948326 0.93573165 prediction 0.482013989180345 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71683589 chr10:71683590 synonymous SNV . 0 22 hm5C_associated_SNPs_110950 0 0 0 0 2 COL13A1 chr10:71683558 3'AG 71683558 Downstream 33bp
chr10 71683590 71683590 1 + C T SKCM 71683589 + 71683569 71683609 41 TGTCGATGGCCAGGTTGGCCCCCCAGGGCAGCCAGGAGACA TGTCGATGGCCAGGTTGGCCCTCCAGGGCAGCCAGGAGACA < 41bp 0.479284276282855 0.741006994590173 0.17948326 0.93573165 prediction 0.482013989180345 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71683589 chr10:71683590 synonymous SNV . 0 22 hm5C_associated_SNPs_110950 0 0 0 0 2 COL13A1 chr10:71683611 5'GT 71683611 Upstream 22bp
chr4 166964484 166964484 1 + T G rs115164532 166964482 + 166964462 166964502 41 AGATTCAGTCTCCCAATTATCCTGATGACTATCGCCCGATG AGATTCAGTCTCCCAATTATCCGGATGACTATCGCCCGATG < 41bp 0.400016006238946 0.741006043634301 0.30958498 0.9084376 prediction 0.482012087268603 Functional Gain - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166964482 chr4:166964484 synonymous SNV . 0 23 hm5C_associated_SNPs_110951 0 0 0 0 2 TLL1 chr4:166964426 3'AG 166964426 Downstream 59bp
chr4 166964484 166964484 1 + T G rs115164532 166964482 + 166964462 166964502 41 AGATTCAGTCTCCCAATTATCCTGATGACTATCGCCCGATG AGATTCAGTCTCCCAATTATCCGGATGACTATCGCCCGATG < 41bp 0.400016006238946 0.741006043634301 0.30958498 0.9084376 prediction 0.482012087268603 Functional Gain - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166964482 chr4:166964484 synonymous SNV . 0 23 hm5C_associated_SNPs_110951 0 0 0 0 2 TLL1 chr4:166964571 5'GT 166964571 Upstream 88bp
chr5 38370555 38370555 1 + C A COAD 38370554 + 38370534 38370574 41 AGCTGGCCCAGTGACATCATCCGGACCCTCTGTGAGTACCA AGCTGGCCCAGTGACATCATCAGGACCCTCTGTGAGTACCA < 41bp 0.550882615740961 0.791888375779355 0.37664166 0.89306515 prediction 0.482011520076788 Functional Gain - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38370554 chr5:38370555 synonymous SNV . 0 22 hm5C_associated_SNPs_110952 0 0 0 0 1 EGFLAM chr5:38370564 5'GT 38370564 Upstream 10bp
chr2 66670141 66670141 1 + C A LIHC 66670137 + 66670117 66670157 41 TAGAGAAGGAGGATCAAAATCAGACAGTGAAGATATAACAA TAGAGAAGGAGGATCAAAATCAGAAAGTGAAGATATAACAA < 41bp 0.328506911287239 0.741002305669263 0.104540914 0.21631777 prediction 0.482004611338526 Functional Gain - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66670137 chr2:66670141 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_110955 0 0 0 0 1 MEIS1 chr2:66670180 5'GT 66670180 Upstream 40bp
chr15 31362263 31362263 1 - G A SKCM 31362264 - 31362244 31362284 41 TCCTATGGAGTTCTTGAATTCCAGGGTGGCGGATATTCCAA TCCTATGGAGTTCTTGAATTCTAGGGTGGCGGATATTCCAA < 41bp 0.501169457694285 0.742170997050453 0.91781753 0.83538854 prediction 0.482003078712337 Functional Gain - TRPM1 ENSG00000134160 CDS Human protein_coding chr15:31362264 chr15:31362263 stopgain 0.924 0 22 hm5C_associated_SNPs_110956 0 0 0 0 1 TRPM1 chr15:31362234 5'GT 31362234 Upstream 30bp
chr5 115428335 115428335 1 + T C UCEC 115428333 + 115428313 115428353 41 AGCTGAAGCATTTGTCAATACGTGGTCTTCTATGGGTCAAG AGCTGAAGCATTTGTCAATACGCGGTCTTCTATGGGTCAAG < 41bp 0.575224256358429 0.81622251942239 0.29510045 0.2812848 prediction 0.481996526127923 Functional Gain - COMMD10 ENSG00000145781 CDS Human protein_coding chr5:115428333 chr5:115428335 nonsynonymous SNV 0.945 4 23 hm5C_associated_SNPs_110957 0 0 0 0 2 COMMD10 chr5:115428242 3'AG 115428242 Downstream 94bp
chr5 115428335 115428335 1 + T C UCEC 115428333 + 115428313 115428353 41 AGCTGAAGCATTTGTCAATACGTGGTCTTCTATGGGTCAAG AGCTGAAGCATTTGTCAATACGCGGTCTTCTATGGGTCAAG < 41bp 0.575224256358429 0.81622251942239 0.29510045 0.2812848 prediction 0.481996526127923 Functional Gain - COMMD10 ENSG00000145781 CDS Human protein_coding chr5:115428333 chr5:115428335 nonsynonymous SNV 0.945 4 23 hm5C_associated_SNPs_110957 0 0 0 0 2 COMMD10 chr5:115428397 5'GT 115428397 Upstream 63bp
chr3 47361170 47361170 1 + C T PRAD 47361169 + 47361149 47361189 41 GACCACAAATTCAGTGCCCACCGGATTGTCTTAGCAGCCTC GACCACAAATTCAGTGCCCACTGGATTGTCTTAGCAGCCTC < 41bp 0.489059988046159 0.740995816993865 0.14415061 0.17316619 prediction 0.481991633987731 Functional Gain - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47361169 chr3:47361170 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_110958 0 0 1 0 1 KLHL18 chr3:47361143 3'AG 47361143 Downstream 28bp
chr1 27321038 27321038 1 + C G rs375877493 27321034 + 27321014 27321054 41 CGACCGACTGATCGCGGACGCCGGCTGGAAGGACTACGGAT CGACCGACTGATCGCGGACGCCGGGTGGAAGGACTACGGAT < 41bp 0.588587099474744 0.829579315893568 0.64069206 0.90440845 prediction 0.481984432837648 Functional Gain - TRNP1 ENSG00000253368 UTR3 Human protein_coding chr1:27321034 chr1:27321038 . . 0 25 hm5C_associated_SNPs_110960 0 0 1 0 1 TRNP1 chr1:27321103 5'GT 27321103 Upstream 66bp
chr17 56327935 56327935 1 + C G BLCA 56327934 + 56327914 56327954 41 AGTAGCGAGTACTCCAAAGCCCAGTGTGATGAGTACTGTAT AGTAGCGAGTACTCCAAAGCCGAGTGTGATGAGTACTGTAT < 41bp 0.428626341438378 0.740990638147159 0.6199304 0.9064084 prediction 0.481981276294319 Functional Gain - LPO ENSG00000167419 CDS Human protein_coding chr17:56327934 chr17:56327935 nonsynonymous SNV 0.996 0 22 hm5C_associated_SNPs_110961 0 0 0 0 1 LPO chr17:56327982 5'GT 56327982 Upstream 48bp
chr3 196731463 196731463 1 + C A rs2271825 196731459 + 196731439 196731479 41 TGGGCGTGTCTTCACTGACCCACCCGCCCAGGGATGCTGCA TGGGCGTGTCTTCACTGACCCACCAGCCCAGGGATGCTGCA < 41bp 0.335920467152286 0.74097831472168 0.2081325 0.36301816 prediction 0.481956629443359 Functional Gain - MELTF-AS1 ENSG00000228109 ncRNA_exonic Human antisense chr3:196731459 chr3:196731463 . . 0 25 hm5C_associated_SNPs_110963 0 0 0 0 1 MELTF-AS1 chr3:196731365 3'AG 196731365 Downstream 99bp
chr12 93100888 93100888 1 + C T SKCM 93100887 + 93100867 93100907 41 GAAGGCCACTTCCTGCCCAGCCCCACCCTACGACACCCTAG GAAGGCCACTTCCTGCCCAGCTCCACCCTACGACACCCTAG < 41bp 0.492978080831382 0.740953501383381 0.07598066 0.27777433 prediction 0.481907002766761 Functional Gain - C12orf74 ENSG00000214215 CDS Human protein_coding chr12:93100887 chr12:93100888 nonsynonymous SNV 0.047 0 22 hm5C_associated_SNPs_110966 0 0 0 0 1 C12orf74 chr12:93100914 5'GT 93100914 Upstream 27bp
chr14 102910131 102910131 1 + C T SKCM 102910130 + 102910110 102910150 41 AGGGCGTGAGCAGCTTCTGTCCGGAAGGCGAGCAGTGGAAG AGGGCGTGAGCAGCTTCTGTCTGGAAGGCGAGCAGTGGAAG < 41bp 0.55283890201183 0.793788016337145 0.88894963 0.8124757 prediction 0.481898228650631 Functional Gain - TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102910130 chr14:102910131 nonsynonymous SNV 0.915 3 22 hm5C_associated_SNPs_110967 0 0 1 0 1 TECPR2 chr14:102910164 5'GT 102910164 Upstream 34bp
chr15 75185092 75185092 1 + C T LAML 75185091 + 75185071 75185111 41 GCCATTGCCCTCACCCCCTTCCAGGGCTTGTGTGGCTTCCG GCCATTGCCCTCACCCCCTTCTAGGGCTTGTGTGGCTTCCG < 41bp 0.527968567521546 0.768906019374786 0.76695955 0.24035323 prediction 0.481874903706478 Functional Gain - MPI ENSG00000178802 CDS Human protein_coding chr15:75185091 chr15:75185092 stopgain 0.999 1 22 hm5C_associated_SNPs_110968 0 0 1 0 1 MPI chr15:75185002 3'AG 75185002 Downstream 91bp
chr19 4357958 4357958 1 + C A rs149311801 4357957 + 4357937 4357977 41 CCCACCACCAGGTGCCGATCCCGGTGCAGAGCTGAGCCGGG CCCACCACCAGGTGCCGATCCAGGTGCAGAGCTGAGCCGGG < 41bp 0.497582104363783 0.740936461616376 0.9140312 0.9358916 prediction 0.481872923232751 Functional Gain - MPND ENSG00000008382 CDS Human protein_coding chr19:4357957 chr19:4357958 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_110969 0 0 0 0 1 MPND chr19:4357948 3'AG 4357948 Downstream 11bp
chr6 44116100 44116100 1 + C T SKCM 44116099 + 44116079 44116119 41 GGCATGGCCTTTGTCACCTTCCACAATGAGACTATCACCGC GGCATGGCCTTTGTCACCTTCTACAATGAGACTATCACCGC < 41bp 0.465817025452912 0.740928074585737 0.16795787 0.9292184 prediction 0.481856149171475 Functional Gain - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116099 chr6:44116100 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_110972 0 0 1 0 1 TMEM63B chr6:44116122 5'GT 44116122 Upstream 23bp
chr19 5915281 5915281 1 + T C rs200316125 5915279 + 5915259 5915299 41 TACAGCGGCGTGAGTGCCTCCATGAACACGGATGAGGAGTT TACAGCGGCGTGAGTGCCTCCACGAACACGGATGAGGAGTT < 41bp 0.56748701329893 0.808413337754337 0.11439669 0.23223889 prediction 0.481852648910815 Functional Gain - CAPS ENSG00000105519 CDS Human protein_coding chr19:5915279 chr19:5915281 nonsynonymous SNV 0.364 1 23 hm5C_associated_SNPs_110973 0 0 1 0 1 CAPS chr19:5915232 3'AG 5915232 Downstream 50bp
chr7 70886084 70886084 1 + C T SKCM 70886083 + 70886063 70886103 41 GACGCCGGAGACCCTTCTCTCCCCATCAGGTCTGTGGCTGG GACGCCGGAGACCCTTCTCTCTCCATCAGGTCTGTGGCTGG < 41bp 0.52709151885095 0.768017670318504 0.119867146 0.958416 prediction 0.481852302935109 Functional Gain - GALNT17 ENSG00000185274 CDS Human protein_coding chr7:70886083 chr7:70886084 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_110974 0 0 0 0 1 GALNT17 chr7:70886091 5'GT 70886091 Upstream 8bp
chr17 41585879 41585879 1 + C A BLCA 41585875 + 41585855 41585895 41 AATCTTTGACCCAGCTCCACCAGGCAGCAGAAAGGTAACAT AATCTTTGACCCAGCTCCACCAGGAAGCAGAAAGGTAACAT < 41bp 0.325182126898763 0.740924580382279 0.43167454 0.58373064 prediction 0.481849160764558 Functional Gain - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41585875 chr17:41585879 synonymous SNV . 0 25 hm5C_associated_SNPs_110975 0 0 1 0 1 DHX8 chr17:41585888 5'GT 41585888 Upstream 10bp
chr17 26727647 26727647 1 - A T COAD 26727651 - 26727631 26727671 41 TCCTCCTGGGAGCTGGCCTCCTGCTCATCCCGGCTGTTCTG TCCTCCTGGGAGCTGGCCTCCTGCACATCCCGGCTGTTCTG < 41bp 0.393334747132213 0.740913050672171 0.084456 0.30467302 prediction 0.481826101344341 Functional Gain - SLC46A1 ENSG00000076351 CDS Human protein_coding chr17:26727651 chr17:26727647 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_110977 0 0 1 0 1 SLC46A1 chr17:26727626 5'GT 26727626 Upstream 22bp
chr3 184295181 184295181 1 + C A UCEC 184295177 + 184295157 184295197 41 CTGCACAGCAGCTCAGGCAGCAGCCTCACCCTATCCTGGGC CTGCACAGCAGCTCAGGCAGCAGCATCACCCTATCCTGGGC < 41bp 0.326752064369147 0.740912112935803 0.19022596 0.08424392 prediction 0.481824225871606 Functional Gain - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184295177 chr3:184295181 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_110978 0 0 0 0 2 EPHB3 chr3:184295131 3'AG 184295131 Downstream 51bp
chr3 184295181 184295181 1 + C A UCEC 184295177 + 184295157 184295197 41 CTGCACAGCAGCTCAGGCAGCAGCCTCACCCTATCCTGGGC CTGCACAGCAGCTCAGGCAGCAGCATCACCCTATCCTGGGC < 41bp 0.326752064369147 0.740912112935803 0.19022596 0.08424392 prediction 0.481824225871606 Functional Gain - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184295177 chr3:184295181 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_110978 0 0 0 0 2 EPHB3 chr3:184295255 5'GT 184295255 Upstream 75bp
chr16 839212 839212 1 + C T rs146538633 839211 + 839191 839231 41 CTGCATGTGTCTCCCCCAGCCCCCAGGATCAAACGGCCTAG CTGCATGTGTCTCCCCCAGCCTCCAGGATCAAACGGCCTAG < 41bp 0.499647785582351 0.740907677200999 0.05927238 0.9127065 prediction 0.481815354401999 Functional Gain - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:839211 chr16:839212 nonsynonymous SNV 0.089 3 22 hm5C_associated_SNPs_110979 0 0 0 0 1 CHTF18 chr16:839210 3'AG 839210 Downstream 3bp
chr9 34517412 34517412 1 + C T COAD 34517411 + 34517391 34517431 41 ATCATCATTGTGGGCGATGACCGTGGGCACATCATCAGCCT ATCATCATTGTGGGCGATGACTGTGGGCACATCATCAGCCT < 41bp 0.513834956299638 0.754734477724778 0.46669045 0.17858216 prediction 0.481799042850281 Functional Gain - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34517411 chr9:34517412 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_110980 1 0 0 0 1 DNAI1 chr9:34517465 5'GT 34517465 Upstream 54bp
chr16 68330394 68330394 1 + C A UCEC 68330393 + 68330373 68330413 41 TCTACCTCCGCTGGAAGGAGCCCAAGCGGCCCCGGCCTCTC TCTACCTCCGCTGGAAGGAGCACAAGCGGCCCCGGCCTCTC < 41bp 0.549244646013368 0.790140821909093 0.29938316 0.47056782 prediction 0.48179235179145 Functional Gain - SLC7A6 ENSG00000103064 CDS Human protein_coding chr16:68330393 chr16:68330394 nonsynonymous SNV 0.561 5 22 hm5C_associated_SNPs_110981 0 0 1 0 1 SLC7A6 chr16:68330416 5'GT 68330416 Upstream 23bp
chr11 126276065 126276065 1 + C T UCEC 126276064 + 126276044 126276084 41 GAGAAACATGGTCAGCAAGTCCCGTGAGTGTCATCCGAGGG GAGAAACATGGTCAGCAAGTCTCGTGAGTGTCATCCGAGGG < 41bp 0.497433346288189 0.740895224897132 0.4032234 0.37291315 prediction 0.481790449794265 Functional Gain - ST3GAL4 ENSG00000110080 CDS Human protein_coding chr11:126276064 chr11:126276065 synonymous SNV . 0 22 hm5C_associated_SNPs_110983 0 0 1 0 2 ST3GAL4 chr11:126275991 3'AG 126275991 Downstream 75bp
chr11 126276065 126276065 1 + C T UCEC 126276064 + 126276044 126276084 41 GAGAAACATGGTCAGCAAGTCCCGTGAGTGTCATCCGAGGG GAGAAACATGGTCAGCAAGTCTCGTGAGTGTCATCCGAGGG < 41bp 0.497433346288189 0.740895224897132 0.4032234 0.37291315 prediction 0.481790449794265 Functional Gain - ST3GAL4 ENSG00000110080 CDS Human protein_coding chr11:126276064 chr11:126276065 synonymous SNV . 0 22 hm5C_associated_SNPs_110983 0 0 1 0 2 ST3GAL4 chr11:126276066 5'GT 126276066 Upstream 2bp
chr2 139307804 139307804 1 + C T UCEC 139307803 + 139307783 139307823 41 GGTGATGTCTCGGGAACCCACCCCACCTCTACCTGGAGATA GGTGATGTCTCGGGAACCCACTCCACCTCTACCTGGAGATA < 41bp 0.567105305512074 0.807993694730529 0.11951402 0.9244723 prediction 0.481776778436911 Functional Gain - SPOPL ENSG00000144228 CDS Human protein_coding chr2:139307803 chr2:139307804 synonymous SNV . 0 22 hm5C_associated_SNPs_110984 0 0 1 0 2 SPOPL chr2:139307727 3'AG 139307727 Downstream 78bp
chr2 139307804 139307804 1 + C T UCEC 139307803 + 139307783 139307823 41 GGTGATGTCTCGGGAACCCACCCCACCTCTACCTGGAGATA GGTGATGTCTCGGGAACCCACTCCACCTCTACCTGGAGATA < 41bp 0.567105305512074 0.807993694730529 0.11951402 0.9244723 prediction 0.481776778436911 Functional Gain - SPOPL ENSG00000144228 CDS Human protein_coding chr2:139307803 chr2:139307804 synonymous SNV . 0 22 hm5C_associated_SNPs_110984 0 0 1 0 2 SPOPL chr2:139307864 5'GT 139307864 Upstream 61bp
chr14 52465255 52465255 1 + T A rs35006177 52465251 + 52465231 52465271 41 AGTACCTGATAATTCAAAAACTGCTGACAATGCAACTAAAA AGTACCTGATAATTCAAAAACTGCAGACAATGCAACTAAAA < 41bp 0.391780230103825 0.740884125802893 0.3565365 0.3107717 prediction 0.481768251605786 Functional Gain - C14orf166 ENSG00000087302 CDS Human protein_coding chr14:52465251 chr14:52465255 synonymous SNV . 0 25 hm5C_associated_SNPs_110985 0 0 1 0 2 C14orf166 chr14:52465212 3'AG 52465212 Downstream 44bp
chr14 52465255 52465255 1 + T A rs35006177 52465251 + 52465231 52465271 41 AGTACCTGATAATTCAAAAACTGCTGACAATGCAACTAAAA AGTACCTGATAATTCAAAAACTGCAGACAATGCAACTAAAA < 41bp 0.391780230103825 0.740884125802893 0.3565365 0.3107717 prediction 0.481768251605786 Functional Gain - C14orf166 ENSG00000087302 CDS Human protein_coding chr14:52465251 chr14:52465255 synonymous SNV . 0 25 hm5C_associated_SNPs_110985 0 0 1 0 2 C14orf166 chr14:52465298 5'GT 52465298 Upstream 44bp
chr16 23197555 23197555 1 + C A rs190977146 23197551 + 23197531 23197571 41 TCTTCTTTGCCCCTCCAGCACGCCCGTCCTCAGAGTCCCGT TCTTCTTTGCCCCTCCAGCACGCCAGTCCTCAGAGTCCCGT < 41bp 0.419572865793171 0.740872601759433 0.025095105 0.044255584 prediction 0.481745203518866 Functional Gain - SCNN1G ENSG00000166828 UTR5 Human protein_coding chr16:23197551 chr16:23197555 . . 0 25 hm5C_associated_SNPs_110986 0 0 0 0 1 SCNN1G chr16:23197549 3'AG 23197549 Downstream 7bp
chr14 23312971 23312971 1 + C T SKCM 23312970 + 23312950 23312990 41 CCCTCAACCCAGGACTACCTCCCGGCCTTCTGTTCCTGATA CCCTCAACCCAGGACTACCTCTCGGCCTTCTGTTCCTGATA < 41bp 0.478086332322089 0.740872384880188 0.11569089 0.106111884 prediction 0.481744769760376 Functional Gain - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23312970 chr14:23312971 synonymous SNV . 0 22 hm5C_associated_SNPs_110987 0 0 0 0 1 MMP14 chr14:23312919 3'AG 23312919 Downstream 53bp
chr17 61904786 61904786 1 + C G rs116192337 61904782 + 61904762 61904802 41 TCTGCCTGGTCTTCAGGTCCCAATCCTCCGCTTCCGCGCTT TCTGCCTGGTCTTCAGGTCCCAATGCTCCGCTTCCGCGCTT < 41bp 0.451387560977884 0.740868007618279 0.0458543 0.02520001 prediction 0.481736015236557 Functional Gain - FTSJ3;PSMC5 ENSG00000087191;ENSG00000108592 UTR5 Human protein_coding chr17:61904782 chr17:61904786 . . 0 25 hm5C_associated_SNPs_110988 0 0 1 0 1 PSMC5 chr17:61904874 5'GT 61904874 Upstream 89bp
chr2 202700373 202700373 1 + C A UCEC 202700372 + 202700352 202700392 41 TCCCTTTTGGACAGGTCTTGCCCGGGCCAAGTCCATTCCCA TCCCTTTTGGACAGGTCTTGCACGGGCCAAGTCCATTCCCA < 41bp 0.48628163151787 0.740866028909221 0.46835184 0.41006967 prediction 0.481732057818441 Functional Gain - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202700372 chr2:202700373 synonymous SNV . 0 22 hm5C_associated_SNPs_110989 0 0 0 0 1 CDK15 chr2:202700366 3'AG 202700366 Downstream 8bp
chr2 66795850 66795850 1 + T C COAD 66795848 + 66795828 66795868 41 GGACAGCCCATGGGAGGTTTCGTAATGGACGGTCAGCAACA GGACAGCCCATGGGAGGTTTCGCAATGGACGGTCAGCAACA < 41bp 0.462620726911896 0.740864992621973 0.29518294 0.39342153 prediction 0.481729985243947 Functional Gain - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66795848 chr2:66795850 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_110990 0 0 1 1 2 MEIS1 chr2:66795799 3'AG 66795799 Downstream 52bp
chr2 66795850 66795850 1 + T C COAD 66795848 + 66795828 66795868 41 GGACAGCCCATGGGAGGTTTCGTAATGGACGGTCAGCAACA GGACAGCCCATGGGAGGTTTCGCAATGGACGGTCAGCAACA < 41bp 0.462620726911896 0.740864992621973 0.29518294 0.39342153 prediction 0.481729985243947 Functional Gain - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66795848 chr2:66795850 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_110990 0 0 1 1 2 MEIS1 chr2:66795888 5'GT 66795888 Upstream 39bp
chr1 21887134 21887134 1 + C T SKCM 21887133 + 21887113 21887153 41 GTTTAGAGAAAGAGAAAGACCCCAAGTACTGGCGAGACCAA GTTTAGAGAAAGAGAAAGACCTCAAGTACTGGCGAGACCAA < 41bp 0.540607877551104 0.781470112852336 0.29831868 0.58819 prediction 0.481724470602465 Functional Gain - ALPL ENSG00000162551 CDS Human protein_coding chr1:21887133 chr1:21887134 nonsynonymous SNV 0.921 4 22 hm5C_associated_SNPs_110992 0 0 0 0 1 ALPL chr1:21887119 3'AG 21887119 Downstream 16bp
chr9 116116596 116116596 1 + C A HNSC 116116595 + 116116575 116116615 41 AGTATGTGGCGGACGTCCTGCCGGGGAAGAATCAAAGAGCA AGTATGTGGCGGACGTCCTGCAGGGGAAGAATCAAAGAGCA < 41bp 0.564340017733775 0.805196031683835 0.69150597 0.6761845 prediction 0.481712027900121 Functional Gain - BSPRY ENSG00000119411 CDS Human protein_coding chr9:116116595 chr9:116116596 nonsynonymous SNV 0.975 0 22 hm5C_associated_SNPs_110994 0 0 0 0 2 BSPRY chr9:116116520 3'AG 116116520 Downstream 77bp
chr9 116116596 116116596 1 + C A HNSC 116116595 + 116116575 116116615 41 AGTATGTGGCGGACGTCCTGCCGGGGAAGAATCAAAGAGCA AGTATGTGGCGGACGTCCTGCAGGGGAAGAATCAAAGAGCA < 41bp 0.564340017733775 0.805196031683835 0.69150597 0.6761845 prediction 0.481712027900121 Functional Gain - BSPRY ENSG00000119411 CDS Human protein_coding chr9:116116595 chr9:116116596 nonsynonymous SNV 0.975 0 22 hm5C_associated_SNPs_110994 0 0 0 0 2 BSPRY chr9:116116618 5'GT 116116618 Upstream 23bp
chrX 69424823 69424823 1 + C T SKCM 69424822 + 69424802 69424842 41 TTGGGGAACCCCTTCCAATTCCCAGGATTAAGAGGCCAAAC TTGGGGAACCCCTTCCAATTCTCAGGATTAAGAGGCCAAAC < 41bp 0.502306256557223 0.743160439737872 0.020299107 0.008986503 prediction 0.4817083663613 Functional Gain - DGAT2L6 ENSG00000184210 CDS Human protein_coding chrX:69424822 chrX:69424823 nonsynonymous SNV 0.958 5 22 hm5C_associated_SNPs_110995 0 0 0 0 1 DGAT2L6 chrX:69424802 3'AG 69424802 Downstream 22bp
chr17 61620942 61620942 1 + C A rs183418801 61620941 + 61620921 61620961 41 TCTTGCTTCCCATAAGGCAGCCGGGGGTCTCCACTCATCCC TCTTGCTTCCCATAAGGCAGCAGGGGGTCTCCACTCATCCC < 41bp 0.476508407040429 0.740832579812386 0.92697704 0.930018 prediction 0.481665159624772 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61620941 chr17:61620942 synonymous SNV . 0 22 hm5C_associated_SNPs_110998 0 0 0 0 2 KCNH6 chr17:61620937 3'AG 61620937 Downstream 6bp
chr17 61620942 61620942 1 + C A rs183418801 61620941 + 61620921 61620961 41 TCTTGCTTCCCATAAGGCAGCCGGGGGTCTCCACTCATCCC TCTTGCTTCCCATAAGGCAGCAGGGGGTCTCCACTCATCCC < 41bp 0.476508407040429 0.740832579812386 0.92697704 0.930018 prediction 0.481665159624772 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61620941 chr17:61620942 synonymous SNV . 0 22 hm5C_associated_SNPs_110998 0 0 0 0 2 KCNH6 chr17:61621021 5'GT 61621021 Upstream 80bp
chr1 22925427 22925427 1 + C A GBM 22925423 + 22925403 22925443 41 CTCTCAGACCTGGGCTATGTCCACCGAGACCTGGCCGCCCG CTCTCAGACCTGGGCTATGTCCACAGAGACCTGGCCGCCCG < 41bp 0.319675758282689 0.740827205399989 0.27171165 0.28640705 prediction 0.481654410799977 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22925423 chr1:22925427 synonymous SNV . 0 25 hm5C_associated_SNPs_111000 0 0 0 0 1 EPHA8 chr1:22925331 3'AG 22925331 Downstream 97bp
chr15 40268953 40268953 1 + C A rs188526490 40268952 + 40268932 40268972 41 CACTTCGGGCGAGCGCTCGGCCAGTGCCCGTTTCCCCGCCA CACTTCGGGCGAGCGCTCGGCAAGTGCCCGTTTCCCCGCCA < 41bp 0.502575990863808 0.74340093418816 0.09249669 0.5581997 prediction 0.481649886648704 Functional Gain - EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40268952 chr15:40268953 synonymous SNV . 0 22 hm5C_associated_SNPs_111001 0 0 1 0 1 EIF2AK4 chr15:40269045 5'GT 40269045 Upstream 93bp
chr16 4744991 4744991 1 + C A UCEC 4744990 + 4744970 4745010 41 CGTGCGGGTCCCGCTGTACACCCAGAAGGACCGAGTCGGAG CGTGCGGGTCCCGCTGTACACACAGAAGGACCGAGTCGGAG < 41bp 0.546163275791223 0.786987971997077 0.023104012 0.06329188 prediction 0.481649392411707 Functional Gain - NUDT16L1 ENSG00000168101 CDS Human protein_coding chr16:4744990 chr16:4744991 nonsynonymous SNV 0.990 0 22 hm5C_associated_SNPs_111002 0 0 1 0 1 NUDT16L1 chr16:4744959 3'AG 4744959 Downstream 33bp
chr20 39721132 39721132 1 + C T SKCM 39721131 + 39721111 39721151 41 GGTGGGAAGAAGAGCGCTATCCTGAAGGCATCAAGTGGAAA GGTGGGAAGAAGAGCGCTATCTTGAAGGCATCAAGTGGAAA < 41bp 0.534675640371312 0.775493751893876 0.18356302 0.19010818 prediction 0.481636223045129 Functional Gain - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721131 chr20:39721132 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_111005 0 0 1 0 2 TOP1 chr20:39721112 3'AG 39721112 Downstream 21bp
chr20 39721132 39721132 1 + C T SKCM 39721131 + 39721111 39721151 41 GGTGGGAAGAAGAGCGCTATCCTGAAGGCATCAAGTGGAAA GGTGGGAAGAAGAGCGCTATCTTGAAGGCATCAAGTGGAAA < 41bp 0.534675640371312 0.775493751893876 0.18356302 0.19010818 prediction 0.481636223045129 Functional Gain - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721131 chr20:39721132 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_111005 0 0 1 0 2 TOP1 chr20:39721227 5'GT 39721227 Upstream 96bp
chr15 27128500 27128500 1 + T C READ 27128498 + 27128478 27128518 41 CACTAGGAGTACACCATAGACGTGTTTTTCCGACAAAGCTG CACTAGGAGTACACCATAGACGCGTTTTTCCGACAAAGCTG < 41bp 0.474773273925306 0.74081579420217 0.30993077 0.25259882 prediction 0.481631588404339 Functional Gain - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27128498 chr15:27128500 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_111006 0 0 0 0 1 GABRA5 chr15:27128484 3'AG 27128484 Downstream 17bp
chr3 112997629 112997629 1 + C T rs75216600 112997628 + 112997608 112997648 41 GCCAGACCACGGCCGCCTCTCCCGTAAGCCGCTAGCAGCAG GCCAGACCACGGCCGCCTCTCTCGTAAGCCGCTAGCAGCAG < 41bp 0.484148471474632 0.740811523522029 0.16913062 0.106666386 prediction 0.481623047044058 Functional Gain - BOC ENSG00000144857 CDS Human protein_coding chr3:112997628 chr3:112997629 synonymous SNV . 0 22 hm5C_associated_SNPs_111009 0 0 0 0 1 BOC chr3:112997630 5'GT 112997630 Upstream 2bp
chr12 6943129 6943129 1 + C T SKCM 6943128 + 6943108 6943148 41 TGTGACCTTGACCCAGGATTCCAGGCAGCTGAATGGGTCGG TGTGACCTTGACCCAGGATTCTAGGCAGCTGAATGGGTCGG < 41bp 0.497089197803281 0.740811173910962 0.8468478 0.73868734 prediction 0.481622347821924 Functional Gain - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6943128 chr12:6943129 synonymous SNV . 0 22 hm5C_associated_SNPs_111011 0 0 1 0 2 P3H3 chr12:6943089 3'AG 6943089 Downstream 41bp
chr12 6943129 6943129 1 + C T SKCM 6943128 + 6943108 6943148 41 TGTGACCTTGACCCAGGATTCCAGGCAGCTGAATGGGTCGG TGTGACCTTGACCCAGGATTCTAGGCAGCTGAATGGGTCGG < 41bp 0.497089197803281 0.740811173910962 0.8468478 0.73868734 prediction 0.481622347821924 Functional Gain - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6943128 chr12:6943129 synonymous SNV . 0 22 hm5C_associated_SNPs_111011 0 0 1 0 2 P3H3 chr12:6943213 5'GT 6943213 Upstream 85bp
chr18 52265075 52265075 1 + T G SKCM 52265072 + 52265052 52265092 41 ATATTGCCGCAATGACTGGTCTATGTGGAAAGTCTTCCTGG ATATTGCCGCAATGACTGGTCTAGGTGGAAAGTCTTCCTGG < 41bp 0.358965446907871 0.740809302027086 0.1756917 0.5411855 prediction 0.481618604054171 Functional Gain - DYNAP ENSG00000178690 CDS Human protein_coding chr18:52265072 chr18:52265075 nonsynonymous SNV 0.945 1 24 hm5C_associated_SNPs_111012 0 0 0 0 1 DYNAP chr18:52265044 3'AG 52265044 Downstream 32bp
chr1 201287874 201287874 1 + C T UCEC 201287873 + 201287853 201287893 41 GATGGCAATAGCAACATGTCCCGGGAAGTGGTGGACCCTGA GATGGCAATAGCAACATGTCCTGGGAAGTGGTGGACCCTGA < 41bp 0.516002367008174 0.75680459011113 0.17827138 0.20243677 prediction 0.481604446205911 Functional Gain - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201287873 chr1:201287874 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_111014 0 0 0 0 1 PKP1 chr1:201287923 5'GT 201287923 Upstream 50bp
chr15 40557141 40557141 1 + C T SKCM 40557140 + 40557120 40557160 41 ACACACTGCGGCGCCCCAAGCCCGTGGTGGACCCTTCGCGA ACACACTGCGGCGCCCCAAGCTCGTGGTGGACCCTTCGCGA < 41bp 0.540735880656111 0.781531313969307 0.26481795 0.1991972 prediction 0.481590866626391 Functional Gain - BUB1B-PAK6;PAK6 ENSG00000137843;ENSG00000259288 CDS Human protein_coding chr15:40557140 chr15:40557141 nonsynonymous SNV 0.986 5 22 hm5C_associated_SNPs_111017 0 0 0 0 1 BUB1B-PAK6;PAK6 chr15:40557190 5'GT 40557190 Upstream 50bp
chr12 117274054 117274054 1 + C T UCEC 117274053 + 117274033 117274073 41 CATCTGCGCCATCTGTCAGGCCGAGTTCCGAGAGCCTCTGA CATCTGCGCCATCTGTCAGGCTGAGTTCCGAGAGCCTCTGA < 41bp 0.515346011541883 0.756135025108731 0.0740706 0.05574882 prediction 0.481578027133696 Functional Gain - RNFT2 ENSG00000135119 CDS Human protein_coding chr12:117274053 chr12:117274054 synonymous SNV . 0 22 hm5C_associated_SNPs_111019 0 0 0 0 2 RNFT2 chr12:117273986 3'AG 117273986 Downstream 69bp
chr12 117274054 117274054 1 + C T UCEC 117274053 + 117274033 117274073 41 CATCTGCGCCATCTGTCAGGCCGAGTTCCGAGAGCCTCTGA CATCTGCGCCATCTGTCAGGCTGAGTTCCGAGAGCCTCTGA < 41bp 0.515346011541883 0.756135025108731 0.0740706 0.05574882 prediction 0.481578027133696 Functional Gain - RNFT2 ENSG00000135119 CDS Human protein_coding chr12:117274053 chr12:117274054 synonymous SNV . 0 22 hm5C_associated_SNPs_111019 0 0 0 0 2 RNFT2 chr12:117274087 5'GT 117274087 Upstream 34bp
chr8 70476293 70476293 1 + C T ESCA 70476292 + 70476272 70476312 41 TCTGTTCGACTGTCAGATCCCCGAGGTTCAGAGGACGGATA TCTGTTCGACTGTCAGATCCCTGAGGTTCAGAGGACGGATA < 41bp 0.49950799040175 0.740784839553434 0.9069507 0.69343317 prediction 0.481569679106867 Functional Gain - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70476292 chr8:70476293 nonsynonymous SNV 0.649 0 22 hm5C_associated_SNPs_111020 0 0 0 0 1 SULF1 chr8:70476382 5'GT 70476382 Upstream 90bp
chr9 135919222 135919222 1 + C T SARC 135919221 + 135919201 135919241 41 CCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCCGCTCTA CCCGAGAAGGAGGCCTTTTTCTACCAGGAGCTGCCGCTCTA < 41bp 0.480046974348366 0.740782246284821 0.1984326 0.0641467 prediction 0.481564492569643 Functional Gain - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919221 chr9:135919222 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_111021 0 0 1 0 1 GTF3C5 chr9:135919313 5'GT 135919313 Upstream 92bp
chr2 190328454 190328454 1 + C T STAD 190328453 + 190328433 190328473 41 TCACCGAAACCTTGAAGCATCCGCAGTAATTCAAGGCCTAG TCACCGAAACCTTGAAGCATCTGCAGTAATTCAAGGCCTAG < 41bp 0.517459254835131 0.758229512196274 0.017233342 0.114200264 prediction 0.481540514722286 Functional Gain - WDR75 ENSG00000115368 CDS Human protein_coding chr2:190328453 chr2:190328454 synonymous SNV . 0 22 hm5C_associated_SNPs_111024 0 0 1 0 2 WDR75 chr2:190328420 3'AG 190328420 Downstream 35bp
chr2 190328454 190328454 1 + C T STAD 190328453 + 190328433 190328473 41 TCACCGAAACCTTGAAGCATCCGCAGTAATTCAAGGCCTAG TCACCGAAACCTTGAAGCATCTGCAGTAATTCAAGGCCTAG < 41bp 0.517459254835131 0.758229512196274 0.017233342 0.114200264 prediction 0.481540514722286 Functional Gain - WDR75 ENSG00000115368 CDS Human protein_coding chr2:190328453 chr2:190328454 synonymous SNV . 0 22 hm5C_associated_SNPs_111024 0 0 1 0 2 WDR75 chr2:190328479 5'GT 190328479 Upstream 26bp
chr2 33534585 33534585 1 + C T UCEC 33534584 + 33534564 33534604 41 GGTCCTATGATTGTACTTGTCCGGATGGATTTCAGCTAGAT GGTCCTATGATTGTACTTGTCTGGATGGATTTCAGCTAGAT < 41bp 0.490491915823278 0.740760363023571 0.4013701 0.41800267 prediction 0.481520726047142 Functional Gain - LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33534584 chr2:33534585 nonsynonymous SNV 0.465 1 22 hm5C_associated_SNPs_111025 0 0 1 0 2 LTBP1 chr2:33534501 3'AG 33534501 Downstream 85bp
chr2 33534585 33534585 1 + C T UCEC 33534584 + 33534564 33534604 41 GGTCCTATGATTGTACTTGTCCGGATGGATTTCAGCTAGAT GGTCCTATGATTGTACTTGTCTGGATGGATTTCAGCTAGAT < 41bp 0.490491915823278 0.740760363023571 0.4013701 0.41800267 prediction 0.481520726047142 Functional Gain - LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33534584 chr2:33534585 nonsynonymous SNV 0.465 1 22 hm5C_associated_SNPs_111025 0 0 1 0 2 LTBP1 chr2:33534623 5'GT 33534623 Upstream 39bp
chr1 54432012 54432012 1 + C A THYM 54432011 + 54431991 54432031 41 TGACTGCGGAAGCTGTGAAGCCACGGGAGACCTCGGAGCCT TGACTGCGGAAGCTGTGAAGCAACGGGAGACCTCGGAGCCT < 41bp 0.536819982075105 0.777579792396807 0.79797775 0.7216686 prediction 0.481519620643402 Functional Gain - LRRC42 ENSG00000116212 CDS Human protein_coding chr1:54432011 chr1:54432012 nonsynonymous SNV 0.006 0 22 hm5C_associated_SNPs_111026 0 0 1 0 2 LRRC42 chr1:54431969 3'AG 54431969 Downstream 44bp
chr1 54432012 54432012 1 + C A THYM 54432011 + 54431991 54432031 41 TGACTGCGGAAGCTGTGAAGCCACGGGAGACCTCGGAGCCT TGACTGCGGAAGCTGTGAAGCAACGGGAGACCTCGGAGCCT < 41bp 0.536819982075105 0.777579792396807 0.79797775 0.7216686 prediction 0.481519620643402 Functional Gain - LRRC42 ENSG00000116212 CDS Human protein_coding chr1:54432011 chr1:54432012 nonsynonymous SNV 0.006 0 22 hm5C_associated_SNPs_111026 0 0 1 0 2 LRRC42 chr1:54432053 5'GT 54432053 Upstream 42bp
chr12 53775974 53775974 1 + C G rs35550715 53775973 + 53775953 53775993 41 CAATGAGAACAGCAACAACTCCCAGGGCCCGAGTCAGTCAG CAATGAGAACAGCAACAACTCGCAGGGCCCGAGTCAGTCAG < 41bp 0.418307841072885 0.74075734437876 0.7306125 0.81867546 prediction 0.48151468875752 Functional Gain - SP1 ENSG00000185591 CDS Human protein_coding chr12:53775973 chr12:53775974 synonymous SNV . 0 22 hm5C_associated_SNPs_111028 0 0 1 0 1 SP1 chr12:53775894 3'AG 53775894 Downstream 81bp
chr2 182322980 182322980 1 + C T ESCA 182322979 + 182322959 182322999 41 CAACGCTTCAGTGATCAATCCCGGGGCGATTTACAGATGCA CAACGCTTCAGTGATCAATCCTGGGGCGATTTACAGATGCA < 41bp 0.510312536704872 0.751064333268979 0.91287684 0.9097551 prediction 0.481503593128215 Functional Gain - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182322979 chr2:182322980 synonymous SNV . 0 22 hm5C_associated_SNPs_111030 0 0 1 0 2 ITGA4 chr2:182322923 3'AG 182322923 Downstream 58bp
chr2 182322980 182322980 1 + C T ESCA 182322979 + 182322959 182322999 41 CAACGCTTCAGTGATCAATCCCGGGGCGATTTACAGATGCA CAACGCTTCAGTGATCAATCCTGGGGCGATTTACAGATGCA < 41bp 0.510312536704872 0.751064333268979 0.91287684 0.9097551 prediction 0.481503593128215 Functional Gain - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182322979 chr2:182322980 synonymous SNV . 0 22 hm5C_associated_SNPs_111030 0 0 1 0 2 ITGA4 chr2:182323044 5'GT 182323044 Upstream 65bp
chr11 1902793 1902793 1 + A G rs11545725 1902790 + 1902770 1902810 41 CTTGGACAGCGGAGAGCCCCCCCAGTGCAGGAGTCCTGAGG CTTGGACAGCGGAGAGCCCCCCCGGTGCAGGAGTCCTGAGG < 41bp 0.510312465419006 0.751031763836076 0.5273182 0.63651806 prediction 0.48143859683414 Functional Gain - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1902790 chr11:1902793 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_111033 0 0 0 0 1 LSP1 chr11:1902826 5'GT 1902826 Upstream 34bp
chr11 13736177 13736177 1 + C T SKCM 13736176 + 13736156 13736196 41 GATTGCTGTAAGCCATAAGGCCCCAGCATTCCTGTATGATA GATTGCTGTAAGCCATAAGGCTCCAGCATTCCTGTATGATA < 41bp 0.561826082071899 0.802539222244637 0.014091164 0.10409629 prediction 0.481426280345475 Functional Gain - FAR1 ENSG00000197601 CDS Human protein_coding chr11:13736176 chr11:13736177 synonymous SNV . 0 22 hm5C_associated_SNPs_111037 0 0 1 0 1 FAR1 chr11:13736227 5'GT 13736227 Upstream 51bp
chrX 151817757 151817757 1 + C T SKCM 151817756 + 151817736 151817776 41 TCCCTGGATCTGCATAAATTCCCTATGGACAAGCAGGCCTG TCCCTGGATCTGCATAAATTCTCTATGGACAAGCAGGCCTG < 41bp 0.565190793632451 0.805901849330218 0.16652694 0.93211734 prediction 0.481422111395535 Functional Gain - GABRQ ENSG00000147402 CDS Human other chrX:151817756 chrX:151817757 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_111038 0 0 0 0 2 GABRQ chrX:151817714 3'AG 151817714 Downstream 44bp
chrX 151817757 151817757 1 + C T SKCM 151817756 + 151817736 151817776 41 TCCCTGGATCTGCATAAATTCCCTATGGACAAGCAGGCCTG TCCCTGGATCTGCATAAATTCTCTATGGACAAGCAGGCCTG < 41bp 0.565190793632451 0.805901849330218 0.16652694 0.93211734 prediction 0.481422111395535 Functional Gain - GABRQ ENSG00000147402 CDS Human other chrX:151817756 chrX:151817757 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_111038 0 0 0 0 2 GABRQ chrX:151817796 5'GT 151817796 Upstream 40bp
chr7 37960746 37960746 1 + T A PRAD 37960742 + 37960722 37960762 41 CGCAACAGCCGCGCCCTGCTCTCCTACGACGGGCTCAACCA CGCAACAGCCGCGCCCTGCTCTCCAACGACGGGCTCAACCA < 41bp 0.656475273563064 0.897185201681037 0.23153976 0.9658289 prediction 0.481419856235945 Functional Gain - EPDR1 ENSG00000086289 CDS Human protein_coding chr7:37960742 chr7:37960746 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_111039 0 0 1 0 1 EPDR1 chr7:37960810 5'GT 37960810 Upstream 65bp
chr2 27558466 27558466 1 - T C ESCA 27558469 - 27558449 27558489 41 GCCCTGCTGGCTCAGCAACCCCCAGGTGAGTAGCACAGCAA GCCCTGCTGGCTCAGCAACCCCCGGGTGAGTAGCACAGCAA < 41bp 0.504127338654473 0.744826740984903 0.3024336 0.8356106 prediction 0.48139880466086 Functional Gain - GTF3C2 ENSG00000115207 CDS Human protein_coding chr2:27558469 chr2:27558466 synonymous SNV . 0 24 hm5C_associated_SNPs_111042 0 0 1 0 1 GTF3C2 chr2:27558465 5'GT 27558465 Upstream 2bp
chr2 86426622 86426622 1 + C G CESC 86426618 + 86426598 86426638 41 GTAGGCGAAGGTGAAGATGGCTGCCTCTGCCTTTGCTGGTG GTAGGCGAAGGTGAAGATGGCTGCGTCTGCCTTTGCTGGTG < 41bp 0.589947488707403 0.830646778930522 0.07962999 0.13512933 prediction 0.481398580446237 Functional Gain - MRPL35 ENSG00000132313 CDS Human protein_coding chr2:86426618 chr2:86426622 synonymous SNV . 0 25 hm5C_associated_SNPs_111043 0 0 1 0 1 MRPL35 chr2:86426656 5'GT 86426656 Upstream 35bp
chr22 29695301 29695301 1 + C A OV 29695297 + 29695277 29695317 41 CCCCAAAGCCTGAAGGCTTCCTCCCGCCACCCTTTCCGCCC CCCCAAAGCCTGAAGGCTTCCTCCAGCCACCCTTTCCGCCC < 41bp 0.699960879897194 0.940651723728119 0.035583824 0.9396987 prediction 0.48138168766185 Functional Gain - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695297 chr22:29695301 nonsynonymous SNV 0.993 3 25 hm5C_associated_SNPs_111044 0 0 1 0 2 EWSR1 chr22:29695224 3'AG 29695224 Downstream 78bp
chr22 29695301 29695301 1 + C A OV 29695297 + 29695277 29695317 41 CCCCAAAGCCTGAAGGCTTCCTCCCGCCACCCTTTCCGCCC CCCCAAAGCCTGAAGGCTTCCTCCAGCCACCCTTTCCGCCC < 41bp 0.699960879897194 0.940651723728119 0.035583824 0.9396987 prediction 0.48138168766185 Functional Gain - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695297 chr22:29695301 nonsynonymous SNV 0.993 3 25 hm5C_associated_SNPs_111044 0 0 1 0 2 EWSR1 chr22:29695321 5'GT 29695321 Upstream 21bp
chr10 75553915 75553915 1 + C G GBM 75553911 + 75553891 75553931 41 TCCTGTGCCCTCAGGTGAAGCTGGCATACCAGGAGTCTGAG TCCTGTGCCCTCAGGTGAAGCTGGGATACCAGGAGTCTGAG < 41bp 0.432558471725727 0.740678566088625 0.7928721 0.8994245 prediction 0.481357132177249 Functional Gain - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75553911 chr10:75553915 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_111050 0 0 1 0 1 ZSWIM8 chr10:75553905 3'AG 75553905 Downstream 11bp
chr15 42127411 42127411 1 + C T rs548174849 42127410 + 42127390 42127430 41 ATCCCATGTGCCCTGGGCCTCCGAAGCCCTGGGTGAGTGGA ATCCCATGTGCCCTGGGCCTCTGAAGCCCTGGGTGAGTGGA < 41bp 0.494100257476243 0.740674110528067 0.73817444 0.35992348 prediction 0.481348221056134 Functional Gain - JMJD7;JMJD7-PLA2G4B ENSG00000168970;ENSG00000243708;ENSG00000243789 CDS Human other chr15:42127410 chr15:42127411 synonymous SNV . 0 22 hm5C_associated_SNPs_111055 0 0 1 0 1 JMJD7;JMJD7-PLA2G4B chr15:42127421 5'GT 42127421 Upstream 11bp
chr17 79984867 79984867 1 + C A SKCM 79984866 + 79984846 79984886 41 AGCAAGGAGGTCCAGCACCTCCGGGAGGAGAAGTCCAAGCA AGCAAGGAGGTCCAGCACCTCAGGGAGGAGAAGTCCAAGCA < 41bp 0.562009203894146 0.802659301823541 0.9090221 0.9190533 prediction 0.48130019585879 Functional Gain - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79984866 chr17:79984867 synonymous SNV . 0 22 hm5C_associated_SNPs_111058 0 0 1 0 2 LRRC45 chr17:79984775 3'AG 79984775 Downstream 93bp
chr17 79984867 79984867 1 + C A SKCM 79984866 + 79984846 79984886 41 AGCAAGGAGGTCCAGCACCTCCGGGAGGAGAAGTCCAAGCA AGCAAGGAGGTCCAGCACCTCAGGGAGGAGAAGTCCAAGCA < 41bp 0.562009203894146 0.802659301823541 0.9090221 0.9190533 prediction 0.48130019585879 Functional Gain - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79984866 chr17:79984867 synonymous SNV . 0 22 hm5C_associated_SNPs_111058 0 0 1 0 2 LRRC45 chr17:79984887 5'GT 79984887 Upstream 21bp
chr9 66553512 66553512 1 + C G COAD 66553508 + 66553488 66553528 41 ACGCGCCAACACTTCAGCACCAGTCGCGGTGGCCACCACTG ACGCGCCAACACTTCAGCACCAGTGGCGGTGGCCACCACTG < 41bp 0.454015160821328 0.740649137867673 0.08953598 0.35713243 prediction 0.481298275735345 Functional Gain - LOC403323;LOC728673 ENSG00000170161;ENSG00000234665 ncRNA_exonic Human other chr9:66553508 chr9:66553512 . . 0 25 hm5C_associated_SNPs_111059 0 0 0 0 1 LOC403323;LOC728673 chr9:66553558 5'GT 66553558 Upstream 47bp
chr10 12191690 12191690 1 + C T HNSC 12191689 + 12191669 12191709 41 TCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTATTC TCATTGAAGTTGGAGATACACTGAAAGATAGAGCTTTATTC < 41bp 0.50634834889585 0.746997110574344 0.03663847 0.09137064 prediction 0.481297523356988 Functional Gain - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191689 chr10:12191690 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_111060 0 0 1 4 2 SEC61A2 chr10:12191594 3'AG 12191594 Downstream 97bp
chr10 12191690 12191690 1 + C T HNSC 12191689 + 12191669 12191709 41 TCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTATTC TCATTGAAGTTGGAGATACACTGAAAGATAGAGCTTTATTC < 41bp 0.50634834889585 0.746997110574344 0.03663847 0.09137064 prediction 0.481297523356988 Functional Gain - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191689 chr10:12191690 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_111060 0 0 1 4 2 SEC61A2 chr10:12191725 5'GT 12191725 Upstream 36bp
chr1 196953195 196953195 1 + C A LUAD 196953191 + 196953171 196953211 41 ATTATTTGCAACACAGGATACAGCCTTCAAAACAATGAGAA ATTATTTGCAACACAGGATACAGCATTCAAAACAATGAGAA < 41bp 0.329653755694945 0.740641187623969 0.022531003 0.046950936 prediction 0.481282375247938 Functional Gain - CFHR5 ENSG00000134389 CDS Human protein_coding chr1:196953191 chr1:196953195 nonsynonymous SNV 0.499 0 25 hm5C_associated_SNPs_111062 0 0 0 0 1 CFHR5 chr1:196953267 5'GT 196953267 Upstream 73bp
chr11 88242027 88242027 1 + C G rs569668690 88242026 + 88242006 88242046 41 TGCCGCGGGCTGCGCGCCTCCCGTGACTTCGATGGCCGGCA TGCCGCGGGCTGCGCGCCTCCGGTGACTTCGATGGCCGGCA < 41bp 0.608631436897615 0.849242252432407 0.5736715 0.85008967 prediction 0.481221631069584 Functional Gain - GRM5 ENSG00000168959 CDS Human protein_coding chr11:88242026 chr11:88242027 synonymous SNV . 0 22 hm5C_associated_SNPs_111068 0 0 0 0 1 GRM5 chr11:88242107 5'GT 88242107 Upstream 81bp
chr3 9516249 9516249 1 + T C UCEC 9516247 + 9516227 9516267 41 TCTCCCACATGGGAGAGTAACATCACAGAGAAAGACTCAGG TCTCCCACATGGGAGAGTAACACCACAGAGAAAGACTCAGG < 41bp 0.464065429317256 0.740609623047202 0.15569368 0.2304858 prediction 0.481219246094404 Functional Gain - SETD5 ENSG00000168137 CDS Human protein_coding chr3:9516247 chr3:9516249 nonsynonymous SNV 0.975 2 23 hm5C_associated_SNPs_111069 0 0 1 0 1 SETD5 chr3:9516266 5'GT 9516266 Upstream 18bp
chr11 75431110 75431110 1 + C A UCEC 75431106 + 75431086 75431126 41 GCTCCTCACTGTCCTGTATGCGGCCTGGTGGTATCTGGACC GCTCCTCACTGTCCTGTATGCGGCATGGTGGTATCTGGACC < 41bp 0.692526884630583 0.933133692432439 0.24026877 0.27510512 prediction 0.481213615603712 Functional Gain - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75431106 chr11:75431110 synonymous SNV . 0 25 hm5C_associated_SNPs_111071 0 0 0 0 1 MOGAT2 chr11:75431037 3'AG 75431037 Downstream 74bp
chr22 50649126 50649126 1 + C T rs150909406 50649125 + 50649105 50649145 41 CTACGCGTACAGCAAGCAGCCCGAGGTGTGCAGGTGGAACC CTACGCGTACAGCAAGCAGCCTGAGGTGTGCAGGTGGAACC < 41bp 0.501602688783557 0.742208123659008 0.24290878 0.2807784 prediction 0.481210869750901 Functional Gain - SELENOO ENSG00000073169 CDS Human protein_coding chr22:50649125 chr22:50649126 unknown . 0 22 hm5C_associated_SNPs_111072 0 0 1 0 1 SELENOO chr22:50649060 3'AG 50649060 Downstream 67bp
chr1 209786185 209786185 1 + C T HNSC 209786184 + 209786164 209786204 41 GCCAGTGGCAGCTCCCACTGCCGGGCAGGGCAGACTGGAGT GCCAGTGGCAGCTCCCACTGCTGGGCAGGGCAGACTGGAGT < 41bp 0.508745182230568 0.749349710756579 0.22443074 0.21180248 prediction 0.481209057052022 Functional Gain - CAMK1G ENSG00000008118 CDS Human protein_coding chr1:209786184 chr1:209786185 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_111073 0 0 0 0 2 CAMK1G chr1:209786130 3'AG 209786130 Downstream 56bp
chr1 209786185 209786185 1 + C T HNSC 209786184 + 209786164 209786204 41 GCCAGTGGCAGCTCCCACTGCCGGGCAGGGCAGACTGGAGT GCCAGTGGCAGCTCCCACTGCTGGGCAGGGCAGACTGGAGT < 41bp 0.508745182230568 0.749349710756579 0.22443074 0.21180248 prediction 0.481209057052022 Functional Gain - CAMK1G ENSG00000008118 CDS Human protein_coding chr1:209786184 chr1:209786185 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_111073 0 0 0 0 2 CAMK1G chr1:209786257 5'GT 209786257 Upstream 73bp
chr3 101572669 101572669 1 + C T LGG 101572668 + 101572648 101572688 41 AAGCAAATTGGCAAATATTTCCCAAGACCAGTTTCTTTCAA AAGCAAATTGGCAAATATTTCTCAAGACCAGTTTCTTTCAA < 41bp 0.561925060124297 0.802527335845439 0.22883552 0.34341154 prediction 0.481204551442284 Functional Gain - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101572668 chr3:101572669 synonymous SNV . 0 22 hm5C_associated_SNPs_111075 0 0 0 0 1 NFKBIZ chr3:101572707 5'GT 101572707 Upstream 39bp
chr11 66241241 66241241 1 + C T BLCA 66241240 + 66241220 66241260 41 AAATGGCGGACCCCAGATGGCCTGATGGATGGACTGACCAC AAATGGCGGACCCCAGATGGCTTGATGGATGGACTGACCAC < 41bp 0.526398698876273 0.766998291041657 0.41630244 0.30590653 prediction 0.481199184330768 Functional Gain - PELI3 ENSG00000174516 CDS Human protein_coding chr11:66241240 chr11:66241241 synonymous SNV . 0 22 hm5C_associated_SNPs_111077 0 0 1 0 1 PELI3 chr11:66241208 3'AG 66241208 Downstream 34bp
chr14 102606504 102606504 1 + C T SKCM 102606503 + 102606483 102606523 41 TTCTATATCTACAAGGGGGTCCGCAAGGTACCGACCCGGGC TTCTATATCTACAAGGGGGTCTGCAAGGTACCGACCCGGGC < 41bp 0.498036320703663 0.740598804356177 0.36637768 0.70526904 prediction 0.481197608712354 Functional Gain - WDR20 ENSG00000140153 CDS Human protein_coding chr14:102606503 chr14:102606504 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_111078 0 0 0 0 2 WDR20 chr14:102606509 5'GT 102606509 Upstream 6bp
chr14 102606504 102606504 1 + C T SKCM 102606503 + 102606483 102606523 41 TTCTATATCTACAAGGGGGTCCGCAAGGTACCGACCCGGGC TTCTATATCTACAAGGGGGTCTGCAAGGTACCGACCCGGGC < 41bp 0.498036320703663 0.740598804356177 0.36637768 0.70526904 prediction 0.481197608712354 Functional Gain - WDR20 ENSG00000140153 CDS Human protein_coding chr14:102606503 chr14:102606504 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_111078 0 0 0 0 2 WDR20 chr14:102606545 5'GT 102606545 Upstream 42bp
chr17 1649113 1649113 1 + C A STAD 1649109 + 1649089 1649129 41 GCCATGATGGCCTTCACTGCCGACCTGTTCTCCCTGGTGGC GCCATGATGGCCTTCACTGCCGACATGTTCTCCCTGGTGGC < 41bp 0.323512509953654 0.740597375735457 0.10959402 0.1346367 prediction 0.481194751470914 Functional Gain - SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1649109 chr17:1649113 nonsynonymous SNV 0.546 3 25 hm5C_associated_SNPs_111079 0 0 1 0 1 SERPINF2 chr17:1649203 5'GT 1649203 Upstream 91bp
chr19 39217717 39217717 1 + C T UCEC 39217716 + 39217696 39217736 41 CAGGAGCAGATGCAGGAGTTCCGGGCGTCCTTCAACCACTT CAGGAGCAGATGCAGGAGTTCTGGGCGTCCTTCAACCACTT < 41bp 0.508549689893752 0.749144529646724 0.9275979 0.9155383 prediction 0.481189679505943 Functional Gain - ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39217716 chr19:39217717 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_111080 0 0 1 0 1 ACTN4 chr19:39217743 5'GT 39217743 Upstream 27bp
chr17 56276408 56276408 1 + C T SKCM 56276407 + 56276387 56276427 41 TTGGGGTTTTCAAGGTGACACCCGATCAACGGAAACCCCCA TTGGGGTTTTCAAGGTGACACTCGATCAACGGAAACCCCCA < 41bp 0.513888754317606 0.754479964215868 0.106374145 0.85945094 prediction 0.481182419796524 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56276407 chr17:56276408 synonymous SNV . 0 22 hm5C_associated_SNPs_111081 0 0 0 0 1 EPX chr17:56276401 3'AG 56276401 Downstream 8bp
chr22 29885618 29885618 1 + T A BRCA 29885614 + 29885594 29885634 41 AGAGAAGGAAGAGGCCAAGTCCCCTGAGAAGGCCAAGTCCC AGAGAAGGAAGAGGCCAAGTCCCCAGAGAAGGCCAAGTCCC < 41bp 0.409387960945971 0.740589485886455 0.20753765 0.1620385 prediction 0.48117897177291 Functional Gain - NEFH ENSG00000100285 CDS Human protein_coding chr22:29885614 chr22:29885618 synonymous SNV . 0 25 hm5C_associated_SNPs_111082 0 0 0 0 1 NEFH chr22:29885571 3'AG 29885571 Downstream 48bp
chr19 7598493 7598493 1 + C T UCEC 7598492 + 7598472 7598512 41 AGCCCCACCTCCGGCAAGTTCCGCCGCGGGAGCGGCTCGGC AGCCCCACCTCCGGCAAGTTCTGCCGCGGGAGCGGCTCGGC < 41bp 0.534749451151869 0.775335734258077 0.29324034 0.2762547 prediction 0.481172566212417 Functional Gain - MCOLN1 ENSG00000090674;ENSG00000268614 CDS Human protein_coding chr19:7598492 chr19:7598493 nonsynonymous SNV 0.986 5 22 hm5C_associated_SNPs_111083 0 0 0 0 2 MCOLN1 chr19:7598409 3'AG 7598409 Downstream 85bp
chr19 7598493 7598493 1 + C T UCEC 7598492 + 7598472 7598512 41 AGCCCCACCTCCGGCAAGTTCCGCCGCGGGAGCGGCTCGGC AGCCCCACCTCCGGCAAGTTCTGCCGCGGGAGCGGCTCGGC < 41bp 0.534749451151869 0.775335734258077 0.29324034 0.2762547 prediction 0.481172566212417 Functional Gain - MCOLN1 ENSG00000090674;ENSG00000268614 CDS Human other chr19:7598492 chr19:7598493 nonsynonymous SNV 0.986 5 22 hm5C_associated_SNPs_111083 0 0 0 0 2 MCOLN1 chr19:7598539 5'GT 7598539 Upstream 47bp
chr13 52234780 52234780 1 + C A rs201069156 52234776 + 52234756 52234796 41 AGACAGTGGACAGTATTGGCCAAGCGTATACCATGCAATGC AGACAGTGGACAGTATTGGCCAAGAGTATACCATGCAATGC < 41bp 0.332444172324533 0.740582826105218 0.2037692 0.14413562 prediction 0.481165652210436 Functional Gain - WDFY2 ENSG00000139668 CDS Human protein_coding chr13:52234776 chr13:52234780 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_111085 0 0 1 3 2 WDFY2 chr13:52234732 3'AG 52234732 Downstream 49bp
chr13 52234780 52234780 1 + C A rs201069156 52234776 + 52234756 52234796 41 AGACAGTGGACAGTATTGGCCAAGCGTATACCATGCAATGC AGACAGTGGACAGTATTGGCCAAGAGTATACCATGCAATGC < 41bp 0.332444172324533 0.740582826105218 0.2037692 0.14413562 prediction 0.481165652210436 Functional Gain - WDFY2 ENSG00000139668 CDS Human protein_coding chr13:52234776 chr13:52234780 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_111085 0 0 1 3 2 WDFY2 chr13:52234799 5'GT 52234799 Upstream 20bp
chr8 134125752 134125752 1 + T A BLCA 134125748 + 134125728 134125768 41 TTCTCTGGGTGGCGAGGACTCAGATGCCCGCGTCGAGGCTG TTCTCTGGGTGGCGAGGACTCAGAAGCCCGCGTCGAGGCTG < 41bp 0.445952694810727 0.740580920528733 0.8690386 0.8857304 prediction 0.481161841057466 Functional Gain - TG ENSG00000042832 CDS Human protein_coding chr8:134125748 chr8:134125752 nonsynonymous SNV 0.024 1 25 hm5C_associated_SNPs_111086 0 0 0 0 2 TG chr8:134125666 3'AG 134125666 Downstream 87bp
chr8 134125752 134125752 1 + T A BLCA 134125748 + 134125728 134125768 41 TTCTCTGGGTGGCGAGGACTCAGATGCCCGCGTCGAGGCTG TTCTCTGGGTGGCGAGGACTCAGAAGCCCGCGTCGAGGCTG < 41bp 0.445952694810727 0.740580920528733 0.8690386 0.8857304 prediction 0.481161841057466 Functional Gain - TG ENSG00000042832 CDS Human protein_coding chr8:134125748 chr8:134125752 nonsynonymous SNV 0.024 1 25 hm5C_associated_SNPs_111086 0 0 0 0 2 TG chr8:134125847 5'GT 134125847 Upstream 96bp
chr5 147494020 147494020 1 + T C rs577616728 147494018 + 147493998 147494038 41 GTGGCCCAGATGGCAAGACCCATGGCAACAAGTGTGCCATG GTGGCCCAGATGGCAAGACCCACGGCAACAAGTGTGCCATG < 41bp 0.582839319065115 0.823416603717761 0.8794268 0.8765305 prediction 0.481154569305293 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147494018 chr5:147494020 synonymous SNV . 0 23 hm5C_associated_SNPs_111087 0 0 0 0 2 SPINK5 chr5:147493925 3'AG 147493925 Downstream 96bp
chr5 147494020 147494020 1 + T C rs577616728 147494018 + 147493998 147494038 41 GTGGCCCAGATGGCAAGACCCATGGCAACAAGTGTGCCATG GTGGCCCAGATGGCAAGACCCACGGCAACAAGTGTGCCATG < 41bp 0.582839319065115 0.823416603717761 0.8794268 0.8765305 prediction 0.481154569305293 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147494018 chr5:147494020 synonymous SNV . 0 23 hm5C_associated_SNPs_111087 0 0 0 0 2 SPINK5 chr5:147494052 5'GT 147494052 Upstream 33bp
chr16 67686214 67686214 1 + C A LIHC 67686213 + 67686193 67686233 41 AATTGGAAGGTCTTTTCTTCCCCGAGGAGAAGGAAGAGGAG AATTGGAAGGTCTTTTCTTCCACGAGGAGAAGGAAGAGGAG < 41bp 0.547089246167483 0.787662980972445 0.3835271 0.48910066 prediction 0.481147469609925 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67686213 chr16:67686214 nonsynonymous SNV 0.078 0 22 hm5C_associated_SNPs_111088 0 0 0 0 1 CARMIL2 chr16:67686242 5'GT 67686242 Upstream 29bp
chr12 54969363 54969363 1 + C A SKCM 54969359 + 54969339 54969379 41 ACAAGGAGGCAGAGTTGGGCCTGCCCTTTTCTCCACTCTGT ACAAGGAGGCAGAGTTGGGCCTGCACTTTTCTCCACTCTGT < 41bp 0.308807954938976 0.740562269306093 0.112376094 0.08898193 prediction 0.481124538612187 Functional Gain - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54969359 chr12:54969363 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_111092 0 0 0 0 1 PDE1B chr12:54969416 5'GT 54969416 Upstream 54bp
chr8 106801079 106801079 1 + C G LUAD 106801075 + 106801055 106801095 41 CACAGAAGGGATGTACCCTGCACGCCTGCTGGACTCAATTC CACAGAAGGGATGTACCCTGCACGGCTGCTGGACTCAATTC < 41bp 0.461328953971592 0.740554937898745 0.11107433 0.12006125 prediction 0.481109875797491 Functional Gain - ZFPM2 ENSG00000169946 CDS Human protein_coding chr8:106801075 chr8:106801079 synonymous SNV . 0 25 hm5C_associated_SNPs_111094 0 0 1 0 1 ZFPM2 chr8:106801152 5'GT 106801152 Upstream 74bp
chr4 89527148 89527148 1 + T A UCEC 89527144 + 89527124 89527164 41 GGAAGATGGGGAAGTTTACACATGTGGTTTGAACACCAAGG GGAAGATGGGGAAGTTTACACATGAGGTTTGAACACCAAGG < 41bp 0.433897318032591 0.740545871722246 0.39921567 0.41391507 prediction 0.481091743444493 Functional Gain - HERC3 ENSG00000138641 CDS Human protein_coding chr4:89527144 chr4:89527148 stopgain 0.998 1 25 hm5C_associated_SNPs_111097 0 0 1 0 1 HERC3 chr4:89527200 5'GT 89527200 Upstream 53bp
chr14 77929028 77929028 1 + T C rs61755658 77929026 + 77929006 77929046 41 GATGAGCCTGACACAAATCTCGTGGCCTTAATGAAGGAAGA GATGAGCCTGACACAAATCTCGCGGCCTTAATGAAGGAAGA < 41bp 0.57134396772236 0.811886525530546 0.87778556 0.86736226 prediction 0.481085115616373 Functional Gain - AHSA1 ENSG00000100591 CDS Human protein_coding chr14:77929026 chr14:77929028 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_111098 0 0 1 0 2 AHSA1 chr14:77928985 3'AG 77928985 Downstream 44bp
chr14 77929028 77929028 1 + T C rs61755658 77929026 + 77929006 77929046 41 GATGAGCCTGACACAAATCTCGTGGCCTTAATGAAGGAAGA GATGAGCCTGACACAAATCTCGCGGCCTTAATGAAGGAAGA < 41bp 0.57134396772236 0.811886525530546 0.87778556 0.86736226 prediction 0.481085115616373 Functional Gain - AHSA1 ENSG00000100591 CDS Human protein_coding chr14:77929026 chr14:77929028 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_111098 0 0 1 0 2 AHSA1 chr14:77929102 5'GT 77929102 Upstream 75bp
chr19 39591613 39591613 1 + C A LUAD 39591612 + 39591592 39591632 41 GCCAATAAGAACCGGGCAGCCCGGCCGTGGATCATCACTAT GCCAATAAGAACCGGGCAGCCAGGCCGTGGATCATCACTAT < 41bp 0.54385999195621 0.784396911851639 0.1239163 0.1359587 prediction 0.481073839790859 Functional Gain - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39591612 chr19:39591613 synonymous SNV . 0 22 hm5C_associated_SNPs_111100 0 0 0 0 2 ACP7 chr19:39591589 3'AG 39591589 Downstream 25bp
chr19 39591613 39591613 1 + C A LUAD 39591612 + 39591592 39591632 41 GCCAATAAGAACCGGGCAGCCCGGCCGTGGATCATCACTAT GCCAATAAGAACCGGGCAGCCAGGCCGTGGATCATCACTAT < 41bp 0.54385999195621 0.784396911851639 0.1239163 0.1359587 prediction 0.481073839790859 Functional Gain - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39591612 chr19:39591613 synonymous SNV . 0 22 hm5C_associated_SNPs_111100 0 0 0 0 2 ACP7 chr19:39591696 5'GT 39591696 Upstream 84bp
chr3 56651569 56651569 1 + C A LIHC 56651568 + 56651548 56651588 41 CTCAAAACAGAGGCATTTCACCAGAAATTTTTCATTCATCT CTCAAAACAGAGGCATTTCACAAGAAATTTTTCATTCATCT < 41bp 0.493381338111281 0.740532158865042 0.25983182 0.5003387 prediction 0.481064317730083 Functional Gain - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56651568 chr3:56651569 nonsynonymous SNV 0.941 3 22 hm5C_associated_SNPs_111101 0 0 1 0 1 CCDC66 chr3:56651633 5'GT 56651633 Upstream 65bp
chr2 27258858 27258858 1 + C T UCEC 27258857 + 27258837 27258877 41 GGGGAGTCACTACATGGTTACCGCATCTGTATCCAGGCCAT GGGGAGTCACTACATGGTTACTGCATCTGTATCCAGGCCAT < 41bp 0.484609102332195 0.740531162013277 0.2988639 0.28498757 prediction 0.481062324026554 Functional Gain - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27258857 chr2:27258858 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_111102 0 0 1 1 2 TMEM214 chr2:27258838 3'AG 27258838 Downstream 21bp
chr2 27258858 27258858 1 + C T UCEC 27258857 + 27258837 27258877 41 GGGGAGTCACTACATGGTTACCGCATCTGTATCCAGGCCAT GGGGAGTCACTACATGGTTACTGCATCTGTATCCAGGCCAT < 41bp 0.484609102332195 0.740531162013277 0.2988639 0.28498757 prediction 0.481062324026554 Functional Gain - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27258857 chr2:27258858 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_111102 0 0 1 1 2 TMEM214 chr2:27258920 5'GT 27258920 Upstream 63bp
chr18 71816287 71816287 1 + C G rs200022512 71816283 + 71816263 71816303 41 AAAGCAAAGGAGGATGGCAGCAAACAAGTGTCTGTGCACAG AAAGCAAAGGAGGATGGCAGCAAAGAAGTGTCTGTGCACAG < 41bp 0.584371250614756 0.82489753090269 0.12332833 0.19081014 prediction 0.481052560575866 Functional Gain - TIMM21 ENSG00000075336 CDS Human protein_coding chr18:71816283 chr18:71816287 nonsynonymous SNV 0.801 0 25 hm5C_associated_SNPs_111103 0 0 1 0 1 TIMM21 chr18:71816344 5'GT 71816344 Upstream 58bp
chr16 2042696 2042696 1 + A G UCEC 2042693 + 2042673 2042713 41 TCCTCACCAATCAGTGGCAGCGCACGGCGCCAGGGCCGGCC TCCTCACCAATCAGTGGCAGCGCGCGGCGCCAGGGCCGGCC < 41bp 0.499345356999551 0.740517190966763 0.28264526 0.339175 prediction 0.481034381933525 Functional Gain - SYNGR3 ENSG00000127561 CDS Human protein_coding chr16:2042693 chr16:2042696 nonsynonymous SNV 0.891 1 24 hm5C_associated_SNPs_111106 0 0 1 0 2 SYNGR3 chr16:2042637 3'AG 2042637 Downstream 60bp
chr16 2042696 2042696 1 + A G UCEC 2042693 + 2042673 2042713 41 TCCTCACCAATCAGTGGCAGCGCACGGCGCCAGGGCCGGCC TCCTCACCAATCAGTGGCAGCGCGCGGCGCCAGGGCCGGCC < 41bp 0.499345356999551 0.740517190966763 0.28264526 0.339175 prediction 0.481034381933525 Functional Gain - SYNGR3 ENSG00000127561 CDS Human protein_coding chr16:2042693 chr16:2042696 nonsynonymous SNV 0.891 1 24 hm5C_associated_SNPs_111106 0 0 1 0 2 SYNGR3 chr16:2042779 5'GT 2042779 Upstream 84bp
chr1 169818687 169818687 1 + C A LIHC 169818683 + 169818663 169818703 41 CCTGTATGTTTGCCTTACTGCTAGCTGACAGGAGTTGGCTG CCTGTATGTTTGCCTTACTGCTAGATGACAGGAGTTGGCTG < 41bp 0.339659940778245 0.740517136455635 0.20137876 0.28656572 prediction 0.481034272911271 Functional Gain - C1orf112 ENSG00000000460 CDS Human protein_coding chr1:169818683 chr1:169818687 nonsynonymous SNV 0.137 0 25 hm5C_associated_SNPs_111107 0 0 1 1 2 C1orf112 chr1:169818641 3'AG 169818641 Downstream 47bp
chr1 169818687 169818687 1 + C A LIHC 169818683 + 169818663 169818703 41 CCTGTATGTTTGCCTTACTGCTAGCTGACAGGAGTTGGCTG CCTGTATGTTTGCCTTACTGCTAGATGACAGGAGTTGGCTG < 41bp 0.339659940778245 0.740517136455635 0.20137876 0.28656572 prediction 0.481034272911271 Functional Gain - C1orf112 ENSG00000000460 CDS Human protein_coding chr1:169818683 chr1:169818687 nonsynonymous SNV 0.137 0 25 hm5C_associated_SNPs_111107 0 0 1 1 2 C1orf112 chr1:169818745 5'GT 169818745 Upstream 59bp
chr11 118403682 118403682 1 + C G rs148591515 118403681 + 118403661 118403701 41 AAGTACCAGGAAGCTCAGGGCCCAGGCCTCCTGGTTGTCCT AAGTACCAGGAAGCTCAGGGCGCAGGCCTCCTGGTTGTCCT < 41bp 0.424561451708312 0.740516596760191 0.21417186 0.34988633 prediction 0.481033193520382 Functional Gain - TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118403681 chr11:118403682 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_111108 0 0 0 0 1 TMEM25 chr11:118403632 3'AG 118403632 Downstream 51bp
chr7 150738005 150738005 1 + C A rs145594004 150738001 + 150737981 150738021 41 CGTGGCCCTCGTGGGCCAGTCTGGCGGAGGTAAGGGGAGCC CGTGGCCCTCGTGGGCCAGTCTGGAGGAGGTAAGGGGAGCC < 41bp 0.689454216008295 0.929963569502042 0.4554637 0.670601 prediction 0.481018706987493 Functional Gain - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150738001 chr7:150738005 synonymous SNV . 0 25 hm5C_associated_SNPs_111109 0 0 0 0 2 ABCB8 chr7:150737915 3'AG 150737915 Downstream 91bp
chr7 150738005 150738005 1 + C A rs145594004 150738001 + 150737981 150738021 41 CGTGGCCCTCGTGGGCCAGTCTGGCGGAGGTAAGGGGAGCC CGTGGCCCTCGTGGGCCAGTCTGGAGGAGGTAAGGGGAGCC < 41bp 0.689454216008295 0.929963569502042 0.4554637 0.670601 prediction 0.481018706987493 Functional Gain - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150738001 chr7:150738005 synonymous SNV . 0 25 hm5C_associated_SNPs_111109 0 0 0 0 2 ABCB8 chr7:150738009 5'GT 150738009 Upstream 5bp
chr14 37145452 37145452 1 + T C LIHC 37145450 + 37145430 37145470 41 AGTTTTGTGTCAGCATCCAGCATGGCTCCTTACCCTACCCC AGTTTTGTGTCAGCATCCAGCACGGCTCCTTACCCTACCCC < 41bp 0.525558933103334 0.766066995472977 0.33552998 0.2435225 prediction 0.481016124739286 Functional Gain - PAX9 ENSG00000198807 CDS Human protein_coding chr14:37145450 chr14:37145452 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_111110 0 0 0 0 1 PAX9 chr14:37145403 3'AG 37145403 Downstream 50bp
chr12 113401156 113401156 1 + T C COAD 113401154 + 113401134 113401174 41 CCCGCTGATCCCACCTGGAACGTGGGCCACGGTAGCTGGGA CCCGCTGATCCCACCTGGAACGCGGGCCACGGTAGCTGGGA < 41bp 0.480222462688172 0.740505750505015 0.4480968 0.39391646 prediction 0.481011501010031 Functional Gain - OAS3 ENSG00000111331 CDS Human protein_coding chr12:113401154 chr12:113401156 nonsynonymous SNV 0.992 2 23 hm5C_associated_SNPs_111111 0 0 1 0 1 OAS3 chr12:113401118 3'AG 113401118 Downstream 39bp
chr3 38317515 38317515 1 + C T rs201547069 38317514 + 38317494 38317534 41 TTCATGATGCAGAGGTTTGGCCGCAAGTGGAGCCAGTTGGG TTCATGATGCAGAGGTTTGGCTGCAAGTGGAGCCAGTTGGG < 41bp 0.531992792639968 0.772496005907056 0.2084313 0.25530344 prediction 0.481006426534175 Functional Gain - SLC22A13 ENSG00000172940 CDS Human protein_coding chr3:38317514 chr3:38317515 nonsynonymous SNV 0.548 5 22 hm5C_associated_SNPs_111113 0 0 0 1 1 SLC22A13 chr3:38317587 5'GT 38317587 Upstream 73bp
chr2 85872158 85872158 1 + T C UCEC 85872156 + 85872136 85872176 41 ACCTCATTGCCAACATCGTGCATGACGGCAAGCCCTCCGAG ACCTCATTGCCAACATCGTGCACGACGGCAAGCCCTCCGAG < 41bp 0.581511643926477 0.822010834840833 0.07980126 0.06584662 prediction 0.480998381828711 Functional Gain - USP39 ENSG00000168883 CDS Human protein_coding chr2:85872156 chr2:85872158 synonymous SNV . 0 23 hm5C_associated_SNPs_111115 0 0 1 0 2 USP39 chr2:85872071 3'AG 85872071 Downstream 88bp
chr2 85872158 85872158 1 + T C UCEC 85872156 + 85872136 85872176 41 ACCTCATTGCCAACATCGTGCATGACGGCAAGCCCTCCGAG ACCTCATTGCCAACATCGTGCACGACGGCAAGCCCTCCGAG < 41bp 0.581511643926477 0.822010834840833 0.07980126 0.06584662 prediction 0.480998381828711 Functional Gain - USP39 ENSG00000168883 CDS Human protein_coding chr2:85872156 chr2:85872158 synonymous SNV . 0 23 hm5C_associated_SNPs_111115 0 0 1 0 2 USP39 chr2:85872206 5'GT 85872206 Upstream 49bp
chr12 4430415 4430415 1 + C A rs116446249 4430411 + 4430391 4430431 41 AGGGGCAGCGCGGCGCGGGGCCACCGACGGGACGCGGCTCC AGGGGCAGCGCGGCGCGGGGCCACAGACGGGACGCGGCTCC < 41bp 0.436967761257142 0.740491416987618 0.21377525 0.5204059 prediction 0.480982833975235 Functional Gain - TIGAR ENSG00000078237 UTR5 Human protein_coding chr12:4430411 chr12:4430415 . . 0 25 hm5C_associated_SNPs_111118 0 0 0 0 1 TIGAR chr12:4430469 5'GT 4430469 Upstream 55bp
chr17 78172328 78172328 1 + C A rs73429414 78172324 + 78172304 78172344 41 AACCTCACGGGCATCTTCATCCACCGGGTCACCCCGGGCTC AACCTCACGGGCATCTTCATCCACAGGGTCACCCCGGGCTC < 41bp 0.328426165345254 0.740488099737414 0.31781846 0.32491967 prediction 0.480976199474829 Functional Gain - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172324 chr17:78172328 synonymous SNV . 0 25 hm5C_associated_SNPs_111119 0 0 0 0 1 CARD14 chr17:78172390 5'GT 78172390 Upstream 63bp
chr17 27064414 27064414 1 + A G STAD 27064411 + 27064391 27064431 41 CTGAGCTTCGCCAGCTGGTCCTGAGTCTACTCAGCCTGGAG CTGAGCTTCGCCAGCTGGTCCTGGGTCTACTCAGCCTGGAG < 41bp 0.532206930706191 0.772693011211652 0.21400893 0.39024872 prediction 0.480972161010922 Functional Gain - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27064411 chr17:27064414 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_111120 0 0 1 0 1 NEK8 chr17:27064324 3'AG 27064324 Downstream 91bp
chr19 12296973 12296973 1 + C A LIHC 12296972 + 12296952 12296992 41 ATTAAAGATCACTACAAACACCGAGGGAGAAATCTAAGGTA ATTAAAGATCACTACAAACACAGAGGGAGAAATCTAAGGTA < 41bp 0.535778152441475 0.776263342563137 0.34744498 0.8590664 prediction 0.480970380243323 Functional Gain - ZNF136 ENSG00000196646 CDS Human protein_coding chr19:12296972 chr19:12296973 synonymous SNV . 0 22 hm5C_associated_SNPs_111121 0 0 1 0 2 ZNF136 chr19:12296929 3'AG 12296929 Downstream 45bp
chr19 12296973 12296973 1 + C A LIHC 12296972 + 12296952 12296992 41 ATTAAAGATCACTACAAACACCGAGGGAGAAATCTAAGGTA ATTAAAGATCACTACAAACACAGAGGGAGAAATCTAAGGTA < 41bp 0.535778152441475 0.776263342563137 0.34744498 0.8590664 prediction 0.480970380243323 Functional Gain - ZNF136 ENSG00000196646 CDS Human protein_coding chr19:12296972 chr19:12296973 synonymous SNV . 0 22 hm5C_associated_SNPs_111121 0 0 1 0 2 ZNF136 chr19:12296989 5'GT 12296989 Upstream 17bp
chr1 161736217 161736217 1 + C G LUAD 161736213 + 161736193 161736233 41 TTTAGCCCGGGACTCTTTCACAGGCTGGATGAAGATTGGGG TTTAGCCCGGGACTCTTTCACAGGGTGGATGAAGATTGGGG < 41bp 0.574642375779491 0.815116076657335 0.6028626 0.9109612 prediction 0.480947401755688 Functional Gain - ATF6 ENSG00000118217 CDS Human protein_coding chr1:161736213 chr1:161736217 nonsynonymous SNV 0.018 0 25 hm5C_associated_SNPs_111125 0 0 1 0 1 ATF6 chr1:161736232 5'GT 161736232 Upstream 16bp
chr17 19281828 19281828 1 + T G rs2233072 19281825 + 19281805 19281845 41 ACGGACAGGGCAGCTCAAGACGCTGAGGTGGTGGCTGCGGC ACGGACAGGGCAGCTCAAGACGCGGAGGTGGTGGCTGCGGC < 41bp 0.355550858826523 0.74046910385714 0.4768055 0.7301762 prediction 0.480938207714279 Functional Gain - MAPK7 ENSG00000166484 UTR5 Human protein_coding chr17:19281825 chr17:19281828 . . 0 24 hm5C_associated_SNPs_111126 0 0 0 0 1 MAPK7 chr17:19281855 5'GT 19281855 Upstream 28bp
chr12 81112163 81112163 1 + C A LUAD 81112162 + 81112142 81112182 41 ATGTAACAGTCCTGTCTGGTCCAGAAAGAGCAGTACTTTTG ATGTAACAGTCCTGTCTGGTCAAGAAAGAGCAGTACTTTTG < 41bp 0.529742054063603 0.770206667684424 0.23920205 0.38123196 prediction 0.480929227241641 Functional Gain - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81112162 chr12:81112163 synonymous SNV . 0 22 hm5C_associated_SNPs_111128 0 0 0 0 2 MYF5 chr12:81112137 3'AG 81112137 Downstream 27bp
chr12 81112163 81112163 1 + C A LUAD 81112162 + 81112142 81112182 41 ATGTAACAGTCCTGTCTGGTCCAGAAAGAGCAGTACTTTTG ATGTAACAGTCCTGTCTGGTCAAGAAAGAGCAGTACTTTTG < 41bp 0.529742054063603 0.770206667684424 0.23920205 0.38123196 prediction 0.480929227241641 Functional Gain - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81112162 chr12:81112163 synonymous SNV . 0 22 hm5C_associated_SNPs_111128 0 0 0 0 2 MYF5 chr12:81112212 5'GT 81112212 Upstream 50bp
chr5 178339649 178339649 1 + C A rs540863033 178339645 + 178339625 178339665 41 TCTCTTGGGAAGAGTGGATTCAAGCAGATTCTGCTCAGAGG TCTCTTGGGAAGAGTGGATTCAAGAAGATTCTGCTCAGAGG < 41bp 0.392814590183807 0.740455438113814 0.031772792 0.11074373 prediction 0.480910876227628 Functional Gain - ZFP2 ENSG00000198939 UTR5 Human protein_coding chr5:178339645 chr5:178339649 . . 0 25 hm5C_associated_SNPs_111131 0 0 0 0 1 ZFP2 chr5:178339720 5'GT 178339720 Upstream 72bp
chr14 23311683 23311683 1 + C T COAD 23311682 + 23311662 23311702 41 GAGGCCATTCGCAAGGCGTTCCGCGTGTGGGAGAGTGCCAC GAGGCCATTCGCAAGGCGTTCTGCGTGTGGGAGAGTGCCAC < 41bp 0.488777370488631 0.740446669326219 0.8761784 0.79946274 prediction 0.480893338652438 Functional Gain - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23311682 chr14:23311683 nonsynonymous SNV 0.990 3 22 hm5C_associated_SNPs_111133 0 0 1 0 1 MMP14 chr14:23311619 3'AG 23311619 Downstream 65bp
chr20 35860734 35860734 1 + C T UCEC 35860733 + 35860713 35860753 41 GCCTGAGAAGAGGCCCCCCACCGTGGTGTCCAATACATTCA GCCTGAGAAGAGGCCCCCCACTGTGGTGTCCAATACATTCA < 41bp 0.528341966070316 0.768787446252225 0.15254489 0.06727263 prediction 0.48089096036382 Functional Gain - RPN2 ENSG00000118705 CDS Human protein_coding chr20:35860733 chr20:35860734 synonymous SNV . 0 22 hm5C_associated_SNPs_111134 0 0 1 0 2 RPN2 chr20:35860699 3'AG 35860699 Downstream 36bp
chr20 35860734 35860734 1 + C T UCEC 35860733 + 35860713 35860753 41 GCCTGAGAAGAGGCCCCCCACCGTGGTGTCCAATACATTCA GCCTGAGAAGAGGCCCCCCACTGTGGTGTCCAATACATTCA < 41bp 0.528341966070316 0.768787446252225 0.15254489 0.06727263 prediction 0.48089096036382 Functional Gain - RPN2 ENSG00000118705 CDS Human protein_coding chr20:35860733 chr20:35860734 synonymous SNV . 0 22 hm5C_associated_SNPs_111134 0 0 1 0 2 RPN2 chr20:35860794 5'GT 35860794 Upstream 61bp
chr6 125397960 125397960 1 + C T SKCM 125397959 + 125397939 125397979 41 GATGCAAATATCGCTACCTCCCAGAGAGACCTCATTTAAGG GATGCAAATATCGCTACCTCCTAGAGAGACCTCATTTAAGG < 41bp 0.56652921765452 0.806974101177805 0.045447618 0.082579345 prediction 0.48088976704657 Functional Gain - RNF217 ENSG00000146373 CDS Human protein_coding chr6:125397959 chr6:125397960 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111135 0 0 0 0 1 RNF217 chr6:125398004 5'GT 125398004 Upstream 45bp
chr11 8704754 8704754 1 + C T LUSC 8704753 + 8704733 8704773 41 AGCTTTTTCCACACAGCCATCCAGACTGAGGAAGACCCGGA AGCTTTTTCCACACAGCCATCTAGACTGAGGAAGACCCGGA < 41bp 0.5160790086476 0.756518317788633 0.4181788 0.21786031 prediction 0.480878618282067 Functional Gain - RPL27A ENSG00000166441 CDS Human protein_coding chr11:8704753 chr11:8704754 synonymous SNV . 0 22 hm5C_associated_SNPs_111137 0 0 1 0 2 RPL27A chr11:8704749 3'AG 8704749 Downstream 6bp
chr11 8704754 8704754 1 + C T LUSC 8704753 + 8704733 8704773 41 AGCTTTTTCCACACAGCCATCCAGACTGAGGAAGACCCGGA AGCTTTTTCCACACAGCCATCTAGACTGAGGAAGACCCGGA < 41bp 0.5160790086476 0.756518317788633 0.4181788 0.21786031 prediction 0.480878618282067 Functional Gain - RPL27A ENSG00000166441 CDS Human protein_coding chr11:8704753 chr11:8704754 synonymous SNV . 0 22 hm5C_associated_SNPs_111137 0 0 1 0 2 RPL27A chr11:8704812 5'GT 8704812 Upstream 59bp
chr1 228400296 228400296 1 - G A OV 228400297 - 228400277 228400317 41 ACCAGCTGGCCGTCCTTCTTCCACACCGTCTCGGGCTTGGG ACCAGCTGGCCGTCCTTCTTCTACACCGTCTCGGGCTTGGG < 41bp 0.516107567041794 0.756544240213308 0.28401542 0.6855939 prediction 0.480873346343029 Functional Gain - OBSCN ENSG00000154358 CDS Human protein_coding chr1:228400297 chr1:228400296 stopgain 0.999 0 22 hm5C_associated_SNPs_111138 0 0 1 0 1 OBSCN chr1:228400222 5'GT 228400222 Upstream 75bp
chr19 41094577 41094577 1 + C T GBM 41094576 + 41094556 41094596 41 ACATGGTCTGTGACTCGCTTCCGCGGCATGATTTCCACCCA ACATGGTCTGTGACTCGCTTCTGCGGCATGATTTCCACCCA < 41bp 0.485579960812382 0.740431648028454 0.88759 0.29383403 prediction 0.480863296056908 Functional Gain - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41094576 chr19:41094577 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_111140 0 0 1 0 1 SHKBP1 chr19:41094530 3'AG 41094530 Downstream 48bp
chr12 113357319 113357319 1 + C T SKCM 113357318 + 113357298 113357338 41 CACACTCCAGGCAGCATCCACCCCACAGGCAGAAGAGGACT CACACTCCAGGCAGCATCCACTCCACAGGCAGAAGAGGACT < 41bp 0.48049757975277 0.740419945607399 0.095259726 0.9476379 prediction 0.480839891214798 Functional Gain - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113357318 chr12:113357319 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_111141 0 0 0 0 1 OAS1 chr12:113357292 3'AG 113357292 Downstream 28bp
chr1 44134854 44134854 1 + C T SKCM 44134853 + 44134833 44134873 41 TGAGTCAGAGTGAGCTCTTCCCCAAGGAGGATCTGAGTTCT TGAGTCAGAGTGAGCTCTTCCTCAAGGAGGATCTGAGTTCT < 41bp 0.556630548629721 0.797050098564569 0.18722576 0.19673184 prediction 0.480839099869695 Functional Gain - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44134853 chr1:44134854 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_111142 0 0 1 0 1 KDM4A chr1:44134771 3'AG 44134771 Downstream 84bp
chr11 118942531 118942531 1 + C A COAD 118942527 + 118942507 118942547 41 AGAGGCTACCTTATCATTGTCTCCCGTGACCGGAAGGTTTC AGAGGCTACCTTATCATTGTCTCCAGTGACCGGAAGGTTTC < 41bp 0.306212391280906 0.740418515391585 0.11554536 0.9472364 prediction 0.480837030783171 Functional Gain - VPS11 ENSG00000160695 CDS Human protein_coding chr11:118942527 chr11:118942531 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_111143 0 0 1 0 1 VPS11 chr11:118942553 5'GT 118942553 Upstream 23bp
chr3 183860633 183860633 1 + C T rs148734067 183860632 + 183860612 183860652 41 AAAGTATGGATTCTGAGGAGCCGGACAGCCGGGGAGGCTCC AAAGTATGGATTCTGAGGAGCTGGACAGCCGGGGAGGCTCC < 41bp 0.541950332287392 0.782364506066804 0.6772346 0.23840004 prediction 0.480828347558824 Functional Gain - EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183860632 chr3:183860633 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_111144 0 0 1 0 2 EIF2B5 chr3:183860567 3'AG 183860567 Downstream 67bp
chr3 183860633 183860633 1 + C T rs148734067 183860632 + 183860612 183860652 41 AAAGTATGGATTCTGAGGAGCCGGACAGCCGGGGAGGCTCC AAAGTATGGATTCTGAGGAGCTGGACAGCCGGGGAGGCTCC < 41bp 0.541950332287392 0.782364506066804 0.6772346 0.23840004 prediction 0.480828347558824 Functional Gain - EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183860632 chr3:183860633 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_111144 0 0 1 0 2 EIF2B5 chr3:183860674 5'GT 183860674 Upstream 42bp
chr6 116600841 116600841 1 + C A UCEC 116600837 + 116600817 116600857 41 GAGCGCGACGGTCTCCGAGCCTCCCTCACCCGGCTCCGCCA GAGCGCGACGGTCTCCGAGCCTCCATCACCCGGCTCCGCCA < 41bp 0.349441817283626 0.740414071412937 0.38795486 0.965904 prediction 0.480828142825873 Functional Gain - TSPYL1 ENSG00000189241 CDS Human protein_coding chr6:116600837 chr6:116600841 nonsynonymous SNV 0.209 0 25 hm5C_associated_SNPs_111145 0 0 0 0 1 TSPYL1 chr6:116600894 5'GT 116600894 Upstream 54bp
chr5 180419848 180419848 1 + C A LUAD 180419847 + 180419827 180419867 41 ACTGGACCGGGCAAGTTTGTCCAGGCCTTGGTGGGGGAGGA ACTGGACCGGGCAAGTTTGTCAAGGCCTTGGTGGGGGAGGA < 41bp 0.555190802926358 0.795600074585544 0.5241394 0.8860557 prediction 0.480818543318374 Functional Gain - BTNL3 ENSG00000168903 CDS Human protein_coding chr5:180419847 chr5:180419848 nonsynonymous SNV 0.011 0 22 hm5C_associated_SNPs_111147 0 0 0 0 1 BTNL3 chr5:180419813 3'AG 180419813 Downstream 36bp
chr6 43038449 43038449 1 + C G ACC 43038448 + 43038428 43038468 41 AGGTCCTGGGCACGAATCATCCAGATGTGGCAAAACAGCTG AGGTCCTGGGCACGAATCATCGAGATGTGGCAAAACAGCTG < 41bp 0.623744795065388 0.864152382328837 0.4704051 0.81365 prediction 0.480815174526898 Functional Gain - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43038448 chr6:43038449 nonsynonymous SNV 0.988 4 22 hm5C_associated_SNPs_111148 0 0 1 0 1 KLC4 chr6:43038430 3'AG 43038430 Downstream 20bp
chr13 114507898 114507898 1 + C A UCEC 114507897 + 114507877 114507917 41 CCTATGGCCCAGCCGTCCCACCACAGACCCTCTACAACCCC CCTATGGCCCAGCCGTCCCACAACAGACCCTCTACAACCCC < 41bp 0.521351250607989 0.761758338197858 0.045805782 0.07289353 prediction 0.480814175179737 Functional Gain - TMEM255B ENSG00000184497 CDS Human protein_coding chr13:114507897 chr13:114507898 nonsynonymous SNV 0.009 3 22 hm5C_associated_SNPs_111149 0 0 0 0 1 TMEM255B chr13:114507858 3'AG 114507858 Downstream 41bp
chr22 24039419 24039419 1 + C T rs148688645 24039418 + 24039398 24039438 41 AGAGGCTGGATTCGGCCATCCCGGACGACCTGGATGTGAGT AGAGGCTGGATTCGGCCATCCTGGACGACCTGGATGTGAGT < 41bp 0.549683017677996 0.790087676290151 0.8174599 0.7607032 prediction 0.480809317224308 Functional Gain - RGL4 ENSG00000159496 CDS Human protein_coding chr22:24039418 chr22:24039419 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_111151 0 0 0 0 1 RGL4 chr22:24039432 5'GT 24039432 Upstream 14bp
chr3 121634526 121634526 1 + T C UCEC 121634524 + 121634504 121634544 41 TTTGGAGTTCCAGGACTGCTCATGGTAATTGCACTTGGTAA TTTGGAGTTCCAGGACTGCTCACGGTAATTGCACTTGGTAA < 41bp 0.47660615571321 0.740404362582986 0.61443084 0.47315454 prediction 0.480808725165971 Functional Gain - SLC15A2 ENSG00000163406 CDS Human protein_coding chr3:121634524 chr3:121634526 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_111152 0 0 0 0 2 SLC15A2 chr3:121634463 3'AG 121634463 Downstream 64bp
chr3 121634526 121634526 1 + T C UCEC 121634524 + 121634504 121634544 41 TTTGGAGTTCCAGGACTGCTCATGGTAATTGCACTTGGTAA TTTGGAGTTCCAGGACTGCTCACGGTAATTGCACTTGGTAA < 41bp 0.47660615571321 0.740404362582986 0.61443084 0.47315454 prediction 0.480808725165971 Functional Gain - SLC15A2 ENSG00000163406 CDS Human protein_coding chr3:121634524 chr3:121634526 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_111152 0 0 0 0 2 SLC15A2 chr3:121634540 5'GT 121634540 Upstream 15bp
chr9 35736234 35736234 1 + T A UCEC 35736230 + 35736210 35736250 41 TTCCTGTGCTCTAGGTCCTACTAGTCTCCTTCTGCCTCCTC TTCCTGTGCTCTAGGTCCTACTAGACTCCTTCTGCCTCCTC < 41bp 0.407131254716416 0.74040241036337 0.052770793 0.12707767 prediction 0.48080482072674 Functional Gain - CREB3 ENSG00000107175 CDS Human protein_coding chr9:35736230 chr9:35736234 nonsynonymous SNV 0.711 1 25 hm5C_associated_SNPs_111153 0 0 0 0 2 CREB3 chr9:35736224 3'AG 35736224 Downstream 11bp
chr9 35736234 35736234 1 + T A UCEC 35736230 + 35736210 35736250 41 TTCCTGTGCTCTAGGTCCTACTAGTCTCCTTCTGCCTCCTC TTCCTGTGCTCTAGGTCCTACTAGACTCCTTCTGCCTCCTC < 41bp 0.407131254716416 0.74040241036337 0.052770793 0.12707767 prediction 0.48080482072674 Functional Gain - CREB3 ENSG00000107175 CDS Human protein_coding chr9:35736230 chr9:35736234 nonsynonymous SNV 0.711 1 25 hm5C_associated_SNPs_111153 0 0 0 0 2 CREB3 chr9:35736308 5'GT 35736308 Upstream 75bp
chr3 50230803 50230803 1 + C T THCA 50230802 + 50230782 50230822 41 GGCCATCGTACGCGCCATGACCACACTCAACATCCAGTACG GGCCATCGTACGCGCCATGACTACACTCAACATCCAGTACG < 41bp 0.552200027557342 0.792602043140506 0.04123816 0.124732584 prediction 0.480804031166328 Functional Gain - GNAT1 ENSG00000114349 CDS Human protein_coding chr3:50230802 chr3:50230803 synonymous SNV . 0 22 hm5C_associated_SNPs_111154 0 0 0 0 1 GNAT1 chr3:50230839 5'GT 50230839 Upstream 37bp
chr1 111437624 111437624 1 + C A LUAD 111437620 + 111437600 111437640 41 AAGGGTCTGACCGACAGCATCCACCGTTACCACTCAGACAA AAGGGTCTGACCGACAGCATCCACAGTTACCACTCAGACAA < 41bp 0.324912028116141 0.740393840752833 0.0037146509 0.016286254 prediction 0.480787681505667 Functional Gain - CD53 ENSG00000143119 CDS Human protein_coding chr1:111437620 chr1:111437624 nonsynonymous SNV 0.013 1 25 hm5C_associated_SNPs_111157 0 0 1 0 2 CD53 chr1:111437582 3'AG 111437582 Downstream 43bp
chr1 111437624 111437624 1 + C A LUAD 111437620 + 111437600 111437640 41 AAGGGTCTGACCGACAGCATCCACCGTTACCACTCAGACAA AAGGGTCTGACCGACAGCATCCACAGTTACCACTCAGACAA < 41bp 0.324912028116141 0.740393840752833 0.0037146509 0.016286254 prediction 0.480787681505667 Functional Gain - CD53 ENSG00000143119 CDS Human protein_coding chr1:111437620 chr1:111437624 nonsynonymous SNV 0.013 1 25 hm5C_associated_SNPs_111157 0 0 1 0 2 CD53 chr1:111437677 5'GT 111437677 Upstream 54bp
chrX 8434278 8434278 1 + C G BRCA 8434277 + 8434257 8434297 41 GAACCACTGAGTCAGGAGAGCCAGGTGGAGGAACCACTGAG GAACCACTGAGTCAGGAGAGCGAGGTGGAGGAACCACTGAG < 41bp 0.623222917661838 0.863613519547824 0.9154395 0.9223804 prediction 0.480781203771971 Functional Gain - VCX3B ENSG00000205642 CDS Human protein_coding chrX:8434277 chrX:8434278 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_111159 0 0 0 0 1 VCX3B chrX:8434191 3'AG 8434191 Downstream 88bp
chr12 53448110 53448110 1 + T C UCEC 53448108 + 53448088 53448128 41 TGGGACTTAGACCTCACCTACGTGACGGAGCGCATCTTGGC TGGGACTTAGACCTCACCTACGCGACGGAGCGCATCTTGGC < 41bp 0.470317387041052 0.740390252313415 0.27369177 0.34091383 prediction 0.480780504626831 Functional Gain - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53448108 chr12:53448110 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_111160 0 0 1 0 1 TNS2 chr12:53448054 3'AG 53448054 Downstream 57bp
chr2 44066243 44066243 1 + C A rs72647316 44066242 + 44066222 44066262 41 GCTGCCGAAAGGGGCCACTCCCCAGGATACCTCGGTGAGTG GCTGCCGAAAGGGGCCACTCCACAGGATACCTCGGTGAGTG < 41bp 0.543062882070576 0.78343888994504 0.3434262 0.82761395 prediction 0.480752015748928 Functional Gain - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44066242 chr2:44066243 synonymous SNV . 0 22 hm5C_associated_SNPs_111166 1 0 1 0 1 ABCG8 chr2:44066255 5'GT 44066255 Upstream 13bp
chr10 3172020 3172020 1 + C T UCEC 3172019 + 3171999 3172039 41 CTCTGTGACCAGACCTGCGACCGCATCAAGCAGTCCGCCAG CTCTGTGACCAGACCTGCGACTGCATCAAGCAGTCCGCCAG < 41bp 0.556925901763167 0.797300821080019 0.34072536 0.16058546 prediction 0.480749838633705 Functional Gain - PFKP ENSG00000067057 CDS Human protein_coding chr10:3172019 chr10:3172020 nonsynonymous SNV 0.961 4 22 hm5C_associated_SNPs_111167 0 0 0 0 1 PFKP chr10:3172011 3'AG 3172011 Downstream 10bp
chr10 1043164 1043164 1 + C T SKCM 1043163 + 1043143 1043183 41 CCTAGTGCGTCAGCATTTATCCCGTTTGCCAACCATTGATC CCTAGTGCGTCAGCATTTATCTCGTTTGCCAACCATTGATC < 41bp 0.537952213616274 0.778322575717175 0.3308056 0.2562319 prediction 0.480740724201803 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1043163 chr10:1043164 synonymous SNV . 0 22 hm5C_associated_SNPs_111169 0 0 1 1 2 GTPBP4 chr10:1043148 3'AG 1043148 Downstream 17bp
chr10 1043164 1043164 1 + C T SKCM 1043163 + 1043143 1043183 41 CCTAGTGCGTCAGCATTTATCCCGTTTGCCAACCATTGATC CCTAGTGCGTCAGCATTTATCTCGTTTGCCAACCATTGATC < 41bp 0.537952213616274 0.778322575717175 0.3308056 0.2562319 prediction 0.480740724201803 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1043163 chr10:1043164 synonymous SNV . 0 22 hm5C_associated_SNPs_111169 0 0 1 1 2 GTPBP4 chr10:1043248 5'GT 1043248 Upstream 85bp
chr2 71789016 71789016 1 + C A LUSC 71789012 + 71788992 71789032 41 TGAAGCTCGGCCACAGTGAGCTCCCTGCAGCTCTGGAGCAG TGAAGCTCGGCCACAGTGAGCTCCATGCAGCTCTGGAGCAG < 41bp 0.370351707895214 0.740355006753064 0.12728274 0.50050414 prediction 0.480710013506128 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71789012 chr2:71789016 nonsynonymous SNV 0.056 2 25 hm5C_associated_SNPs_111172 0 0 0 0 1 DYSF chr2:71789074 5'GT 71789074 Upstream 59bp
chr16 30939204 30939204 1 + C G CESC 30939200 + 30939180 30939220 41 CGCAAGGGCCCCCTGCCTGCCGGGCCCCCCCCGGAGGACGT CGCAAGGGCCCCCTGCCTGCCGGGGCCCCCCCGGAGGACGT < 41bp 0.582031102145813 0.822378163951923 0.52631164 0.9158863 prediction 0.480694123612221 Functional Gain - FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30939200 chr16:30939204 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_111174 0 0 1 0 1 FBXL19 chr16:30939284 5'GT 30939284 Upstream 81bp
chr13 113814337 113814337 1 + C A THCA 113814336 + 113814316 113814356 41 TCTCGTCTGTAGTATTTCTCCCGGCCTCCAAAGCAAACGAC TCTCGTCTGTAGTATTTCTCCAGGCCTCCAAAGCAAACGAC < 41bp 0.476235633941616 0.740346425925227 0.16100416 0.28206354 prediction 0.480692851850454 Functional Gain - PROZ ENSG00000126231 CDS Human protein_coding chr13:113814336 chr13:113814337 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_111175 0 0 0 0 1 PROZ chr13:113814328 3'AG 113814328 Downstream 10bp
chr16 24366243 24366243 1 + C T BLCA 24366242 + 24366222 24366262 41 GTGGCAGCCAGTGAGTTCCACCGCAGCAGACACAACGTCAT GTGGCAGCCAGTGAGTTCCACTGCAGCAGACACAACGTCAT < 41bp 0.551778591976726 0.792124801080966 0.37819618 0.61622345 prediction 0.480692418208479 Functional Gain - CACNG3 ENSG00000006116 CDS Human protein_coding chr16:24366242 chr16:24366243 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111176 0 0 0 0 2 CACNG3 chr16:24366154 3'AG 24366154 Downstream 90bp
chr16 24366243 24366243 1 + C T BLCA 24366242 + 24366222 24366262 41 GTGGCAGCCAGTGAGTTCCACCGCAGCAGACACAACGTCAT GTGGCAGCCAGTGAGTTCCACTGCAGCAGACACAACGTCAT < 41bp 0.551778591976726 0.792124801080966 0.37819618 0.61622345 prediction 0.480692418208479 Functional Gain - CACNG3 ENSG00000006116 CDS Human protein_coding chr16:24366242 chr16:24366243 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111176 0 0 0 0 2 CACNG3 chr16:24366294 5'GT 24366294 Upstream 52bp
chr19 55175232 55175232 1 + C A UCEC 55175228 + 55175208 55175248 41 CCAGGGCCCCTCCCCAAACCCACCCTCTGGGCTGAGCCAGG CCAGGGCCCCTCCCCAAACCCACCATCTGGGCTGAGCCAGG < 41bp 0.308131060847674 0.740343936130259 0.03545171 0.110400766 prediction 0.480687872260518 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55175228 chr19:55175232 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_111178 0 0 0 0 1 LILRB4 chr19:55175212 3'AG 55175212 Downstream 21bp
chr1 150256910 150256910 1 + A G UCEC 150256907 + 150256887 150256927 41 TAGGTGTTTTGCAGAAGCCACAGATGGGGTAAGTCCCGCTG TAGGTGTTTTGCAGAAGCCACAGGTGGGGTAAGTCCCGCTG < 41bp 0.491468449673512 0.740335325097252 0.7108624 0.89128494 prediction 0.480670650194503 Functional Gain - CIART ENSG00000159208 CDS Human protein_coding chr1:150256907 chr1:150256910 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_111182 0 0 0 0 2 CIART chr1:150256836 3'AG 150256836 Downstream 75bp
chr1 150256910 150256910 1 + A G UCEC 150256907 + 150256887 150256927 41 TAGGTGTTTTGCAGAAGCCACAGATGGGGTAAGTCCCGCTG TAGGTGTTTTGCAGAAGCCACAGGTGGGGTAAGTCCCGCTG < 41bp 0.491468449673512 0.740335325097252 0.7108624 0.89128494 prediction 0.480670650194503 Functional Gain - CIART ENSG00000159208 CDS Human protein_coding chr1:150256907 chr1:150256910 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_111182 0 0 0 0 2 CIART chr1:150256914 5'GT 150256914 Upstream 5bp
chr19 36029295 36029295 1 + C A LUAD 36029294 + 36029274 36029314 41 TGAATGATCCATTCATTGACCCGGAATACATGGTCAGTAGC TGAATGATCCATTCATTGACCAGGAATACATGGTCAGTAGC < 41bp 0.569882535543628 0.81021541949028 0.63652015 0.89789045 prediction 0.480665767893303 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36029294 chr19:36029295 nonsynonymous SNV 0.992 2 22 hm5C_associated_SNPs_111184 0 0 0 0 2 GAPDHS chr19:36029209 3'AG 36029209 Downstream 87bp
chr19 36029295 36029295 1 + C A LUAD 36029294 + 36029274 36029314 41 TGAATGATCCATTCATTGACCCGGAATACATGGTCAGTAGC TGAATGATCCATTCATTGACCAGGAATACATGGTCAGTAGC < 41bp 0.569882535543628 0.81021541949028 0.63652015 0.89789045 prediction 0.480665767893303 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36029294 chr19:36029295 nonsynonymous SNV 0.992 2 22 hm5C_associated_SNPs_111184 0 0 0 0 2 GAPDHS chr19:36029305 5'GT 36029305 Upstream 11bp
chr11 120099614 120099614 1 + C A UCEC 120099613 + 120099593 120099633 41 GTTCGAGGCTCTGCCCAAGGCCTCAGAGCAGGCGGAGCTGC GTTCGAGGCTCTGCCCAAGGCATCAGAGCAGGCGGAGCTGC < 41bp 0.524616922021931 0.764949567884271 0.22264618 0.46651855 prediction 0.480665291724681 Functional Gain - OAF ENSG00000184232 CDS Human protein_coding chr11:120099613 chr11:120099614 synonymous SNV . 0 22 hm5C_associated_SNPs_111185 0 0 1 0 1 OAF chr11:120099577 3'AG 120099577 Downstream 38bp
chr19 55418085 55418085 1 + T C rs144737108 55418083 + 55418063 55418103 41 ATCCCGGACATGAACTCCCGCATGGCAGGGCAATACAGCTG ATCCCGGACATGAACTCCCGCACGGCAGGGCAATACAGCTG < 41bp 0.515407037736563 0.755736625673747 0.03625846 0.010217041 prediction 0.480659175874367 Functional Gain - NCR1 ENSG00000189430 CDS Human protein_coding chr19:55418083 chr19:55418085 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_111186 0 0 0 0 1 NCR1 chr19:55418165 5'GT 55418165 Upstream 81bp
chr9 135447854 135447854 1 + T C ACC 135447852 + 135447832 135447872 41 GCCCACCGGGAAGAGTGTGCCGTGCGCCAGGGGACCCTGCG GCCCACCGGGAAGAGTGTGCCGCGCGCCAGGGGACCCTGCG < 41bp 0.527678599367048 0.768007666043137 0.05012703 0.101124555 prediction 0.480658133352178 Functional Gain - CFAP77 ENSG00000188523 CDS Human protein_coding chr9:135447852 chr9:135447854 nonsynonymous SNV 0.809 0 23 hm5C_associated_SNPs_111187 0 0 0 0 1 CFAP77 chr9:135447775 3'AG 135447775 Downstream 80bp
chr1 32745230 32745230 1 + C T LUAD 32745229 + 32745209 32745249 41 AGAAAGGTCTGGGGGCCTCCCCCTGGGGCAACTTGGGCCAG AGAAAGGTCTGGGGGCCTCCCTCTGGGGCAACTTGGGCCAG < 41bp 0.536734989791818 0.77705657662786 0.27643192 0.2933423 prediction 0.480643173672083 Functional Gain - LCK ENSG00000182866 CDS Human protein_coding chr1:32745229 chr1:32745230 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_111189 0 0 0 0 1 LCK chr1:32745182 3'AG 32745182 Downstream 49bp
chr2 109421374 109421374 1 + C T SKCM 109421373 + 109421353 109421393 41 TGCAGAAGTTGAACACTTAACCGAAGTTCTTAAGGAAAAGA TGCAGAAGTTGAACACTTAACTGAAGTTCTTAAGGAAAAGA < 41bp 0.508318305487397 0.748636964761152 0.38889775 0.23438287 prediction 0.480637318547509 Functional Gain - CCDC138 ENSG00000163006 CDS Human protein_coding chr2:109421373 chr2:109421374 synonymous SNV . 0 22 hm5C_associated_SNPs_111191 0 0 1 0 2 CCDC138 chr2:109421345 3'AG 109421345 Downstream 30bp
chr2 109421374 109421374 1 + C T SKCM 109421373 + 109421353 109421393 41 TGCAGAAGTTGAACACTTAACCGAAGTTCTTAAGGAAAAGA TGCAGAAGTTGAACACTTAACTGAAGTTCTTAAGGAAAAGA < 41bp 0.508318305487397 0.748636964761152 0.38889775 0.23438287 prediction 0.480637318547509 Functional Gain - CCDC138 ENSG00000163006 CDS Human protein_coding chr2:109421373 chr2:109421374 synonymous SNV . 0 22 hm5C_associated_SNPs_111191 0 0 1 0 2 CCDC138 chr2:109421464 5'GT 109421464 Upstream 91bp
chr1 204091108 204091108 1 + C A UCEC 204091104 + 204091084 204091124 41 GGGGCCATGGCCACCCACCACCCCCTGCAGGTACCGCCCTC GGGGCCATGGCCACCCACCACCCCATGCAGGTACCGCCCTC < 41bp 0.311444097604287 0.740311651613284 0.1437822 0.19150957 prediction 0.480623303226567 Functional Gain - SOX13 ENSG00000143842 CDS Human protein_coding chr1:204091104 chr1:204091108 nonsynonymous SNV 0.971 1 25 hm5C_associated_SNPs_111193 0 0 1 0 2 SOX13 chr1:204091028 3'AG 204091028 Downstream 81bp
chr1 204091108 204091108 1 + C A UCEC 204091104 + 204091084 204091124 41 GGGGCCATGGCCACCCACCACCCCCTGCAGGTACCGCCCTC GGGGCCATGGCCACCCACCACCCCATGCAGGTACCGCCCTC < 41bp 0.311444097604287 0.740311651613284 0.1437822 0.19150957 prediction 0.480623303226567 Functional Gain - SOX13 ENSG00000143842 CDS Human protein_coding chr1:204091104 chr1:204091108 nonsynonymous SNV 0.971 1 25 hm5C_associated_SNPs_111193 0 0 1 0 2 SOX13 chr1:204091113 5'GT 204091113 Upstream 6bp
chr17 73818663 73818663 1 + C G SKCM 73818659 + 73818639 73818679 41 CAGGGCCAGGGGCTGCCGAGCTGGCCCGACTTCGGCAAGAG CAGGGCCAGGGGCTGCCGAGCTGGGCCGACTTCGGCAAGAG < 41bp 0.599957381987624 0.840255219363549 0.2670765 0.623201 prediction 0.48059567475185 Functional Gain - UNK ENSG00000132478 CDS Human protein_coding chr17:73818659 chr17:73818663 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_111195 0 0 1 0 1 UNK chr17:73818739 5'GT 73818739 Upstream 77bp
chr6 106547183 106547183 1 + C T SKCM 106547182 + 106547162 106547202 41 CTCTTTTGGACAGATCTATTCCAGAGGGGAGCTTCACCACT CTCTTTTGGACAGATCTATTCTAGAGGGGAGCTTCACCACT < 41bp 0.523384030463085 0.763669988543412 0.85922354 0.5237754 prediction 0.480571916160653 Functional Gain - PRDM1 ENSG00000057657 CDS Human protein_coding chr6:106547182 chr6:106547183 synonymous SNV . 0 22 hm5C_associated_SNPs_111201 0 0 0 0 1 PRDM1 chr6:106547175 3'AG 106547175 Downstream 9bp
chrX 152085712 152085712 1 + C A PCPG 152085711 + 152085691 152085731 41 GCTCCCACTGGCTACATCATCCGGTAAGTGACCGCAGGACT GCTCCCACTGGCTACATCATCAGGTAAGTGACCGCAGGACT < 41bp 0.554728559536936 0.79501262048174 0.6562047 0.9084543 prediction 0.480568121889608 Functional Gain - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152085711 chrX:152085712 synonymous SNV . 0 22 hm5C_associated_SNPs_111202 0 0 0 0 2 ZNF185 chrX:152085675 3'AG 152085675 Downstream 38bp
chrX 152085712 152085712 1 + C A PCPG 152085711 + 152085691 152085731 41 GCTCCCACTGGCTACATCATCCGGTAAGTGACCGCAGGACT GCTCCCACTGGCTACATCATCAGGTAAGTGACCGCAGGACT < 41bp 0.554728559536936 0.79501262048174 0.6562047 0.9084543 prediction 0.480568121889608 Functional Gain - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152085711 chrX:152085712 synonymous SNV . 0 22 hm5C_associated_SNPs_111202 0 0 0 0 2 ZNF185 chrX:152085713 5'GT 152085713 Upstream 2bp
chr19 58563904 58563904 1 + C A LUAD 58563900 + 58563880 58563920 41 CAGTGGCAGCAGCCCCAGCACTCCCCGAGGAAAGTGAGTGG CAGTGGCAGCAGCCCCAGCACTCCACGAGGAAAGTGAGTGG < 41bp 0.30537399956795 0.740260860716613 0.5253742 0.9170604 prediction 0.480521721433227 Functional Gain - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58563900 chr19:58563904 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_111204 0 0 0 0 2 ZSCAN1 chr19:58563858 3'AG 58563858 Downstream 47bp
chr19 58563904 58563904 1 + C A LUAD 58563900 + 58563880 58563920 41 CAGTGGCAGCAGCCCCAGCACTCCCCGAGGAAAGTGAGTGG CAGTGGCAGCAGCCCCAGCACTCCACGAGGAAAGTGAGTGG < 41bp 0.30537399956795 0.740260860716613 0.5253742 0.9170604 prediction 0.480521721433227 Functional Gain - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58563900 chr19:58563904 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_111204 0 0 0 0 2 ZSCAN1 chr19:58563996 5'GT 58563996 Upstream 93bp
chr10 119305282 119305282 1 + C A rs424112 119305281 + 119305261 119305301 41 GAATCACTACGTGGTGGGCGCCGAAAGGAAGCAGCTGGCAC GAATCACTACGTGGTGGGCGCAGAAAGGAAGCAGCTGGCAC < 41bp 0.543880206888094 0.78413931302774 0.2742333 0.3075716 prediction 0.480518212279292 Functional Gain - EMX2 ENSG00000170370 CDS Human protein_coding chr10:119305281 chr10:119305282 synonymous SNV . 0 22 hm5C_associated_SNPs_111205 0 0 0 0 1 EMX2 chr10:119305327 5'GT 119305327 Upstream 46bp
chr20 37274744 37274744 1 + C G rs116732775 37274740 + 37274720 37274760 41 AAACTGAACGACAGTAGCAGCAGGCGCCCCCAGCTCTGCGA AAACTGAACGACAGTAGCAGCAGGGGCCCCCAGCTCTGCGA < 41bp 0.597196064122796 0.837443495302242 0.72948235 0.89615536 prediction 0.480494862358893 Functional Gain - ARHGAP40 ENSG00000124143 CDS Human protein_coding chr20:37274740 chr20:37274744 nonsynonymous SNV 0.340 1 25 hm5C_associated_SNPs_111206 0 0 0 0 2 ARHGAP40 chr20:37274690 3'AG 37274690 Downstream 55bp
chr20 37274744 37274744 1 + C G rs116732775 37274740 + 37274720 37274760 41 AAACTGAACGACAGTAGCAGCAGGCGCCCCCAGCTCTGCGA AAACTGAACGACAGTAGCAGCAGGGGCCCCCAGCTCTGCGA < 41bp 0.597196064122796 0.837443495302242 0.72948235 0.89615536 prediction 0.480494862358893 Functional Gain - ARHGAP40 ENSG00000124143 CDS Human protein_coding chr20:37274740 chr20:37274744 nonsynonymous SNV 0.340 1 25 hm5C_associated_SNPs_111206 0 0 0 0 2 ARHGAP40 chr20:37274830 5'GT 37274830 Upstream 87bp
chr1 17597662 17597662 1 + C A LUAD 17597658 + 17597638 17597678 41 CCACAGGCCGAGAACCGCAACGACCGCTGGATCCAGGTAAC CCACAGGCCGAGAACCGCAACGACAGCTGGATCCAGGTAAC < 41bp 0.317812656551077 0.740246621072579 0.04062003 0.1705279 prediction 0.480493242145159 Functional Gain - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17597658 chr1:17597662 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_111208 0 0 0 0 1 PADI3 chr1:17597673 5'GT 17597673 Upstream 12bp
chr15 90258298 90258298 1 + C T SKCM 90258297 + 90258277 90258317 41 ACCCCCAACTCACTTCAAATCCAAAGAAAAAAGTCAGACAG ACCCCCAACTCACTTCAAATCTAAAGAAAAAAGTCAGACAG < 41bp 0.529383058138242 0.769616659971328 0.07983863 0.06949869 prediction 0.480467203666172 Functional Gain - WDR93 ENSG00000140527 CDS Human protein_coding chr15:90258297 chr15:90258298 nonsynonymous SNV 0.507 1 22 hm5C_associated_SNPs_111210 0 0 0 0 2 WDR93 chr15:90258211 3'AG 90258211 Downstream 88bp
chr15 90258298 90258298 1 + C T SKCM 90258297 + 90258277 90258317 41 ACCCCCAACTCACTTCAAATCCAAAGAAAAAAGTCAGACAG ACCCCCAACTCACTTCAAATCTAAAGAAAAAAGTCAGACAG < 41bp 0.529383058138242 0.769616659971328 0.07983863 0.06949869 prediction 0.480467203666172 Functional Gain - WDR93 ENSG00000140527 CDS Human protein_coding chr15:90258297 chr15:90258298 nonsynonymous SNV 0.507 1 22 hm5C_associated_SNPs_111210 0 0 0 0 2 WDR93 chr15:90258326 5'GT 90258326 Upstream 29bp
chr19 34832392 34832392 1 + C A BLCA 34832388 + 34832368 34832408 41 AGATCTGTGATTTTGGCAACCAGGCTGACCTGCCTTCTGGA AGATCTGTGATTTTGGCAACCAGGATGACCTGCCTTCTGGA < 41bp 0.330104703721221 0.740227761458157 0.89586914 0.90232265 prediction 0.480455522916313 Functional Gain - KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34832388 chr19:34832392 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_111211 0 0 1 0 1 KIAA0355 chr19:34832327 3'AG 34832327 Downstream 66bp
chr6 160212105 160212105 1 + C A SKCM 160212104 + 160212084 160212124 41 CCTGGAGCTTTTATCTGTAGCCAGGAAAGAGCGGGGCTGGC CCTGGAGCTTTTATCTGTAGCAAGGAAAGAGCGGGGCTGGC < 41bp 0.541310422857179 0.78153543065209 0.74667597 0.639313 prediction 0.480450015589821 Functional Gain - MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160212104 chr6:160212105 synonymous SNV . 0 22 hm5C_associated_SNPs_111212 0 0 1 0 1 MRPL18 chr6:160212158 5'GT 160212158 Upstream 54bp
chr1 17265457 17265457 1 + C A rs373070567 17265456 + 17265436 17265476 41 GCTGAGCGGCTCTGAGCGCACCGCGGATGCTTCCAACGGCA GCTGAGCGGCTCTGAGCGCACAGCGGATGCTTCCAACGGCA < 41bp 0.492679631602219 0.740216344255651 0.8917835 0.88888514 prediction 0.480432688511302 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17265456 chr1:17265457 synonymous SNV . 0 22 hm5C_associated_SNPs_111214 0 0 1 0 1 CROCC chr1:17265404 3'AG 17265404 Downstream 54bp
chr17 77681389 77681389 1 + C A UCEC 77681385 + 77681365 77681405 41 CAGCGATGGGAGGGCAGGGCCTGCCTGTGGGACCCATCATG CAGCGATGGGAGGGCAGGGCCTGCATGTGGGACCCATCATG < 41bp 0.384639799967719 0.740214703115804 0.17015183 0.5776298 prediction 0.480429406231607 Functional Gain - LINC02078 ENSG00000214105 ncRNA_exonic Human other chr17:77681385 chr17:77681389 . . 0 25 hm5C_associated_SNPs_111215 0 0 0 0 1 LINC02078 chr17:77681465 5'GT 77681465 Upstream 77bp
chr18 9944983 9944983 1 + T A LUSC 9944979 + 9944959 9944999 41 AATGAGCAGCATCAACAACACAGTTGCAACACCTGCCAGTT AATGAGCAGCATCAACAACACAGTAGCAACACCTGCCAGTT < 41bp 0.421778473238373 0.740205452401837 0.46007764 0.21430844 prediction 0.480410904803673 Functional Gain - VAPA ENSG00000101558 CDS Human protein_coding chr18:9944979 chr18:9944983 synonymous SNV . 0 25 hm5C_associated_SNPs_111218 0 0 0 0 1 VAPA chr18:9945055 5'GT 9945055 Upstream 73bp
chr1 55273670 55273670 1 + C A UCEC 55273669 + 55273649 55273689 41 AGCTCTGGGGAGGTTCGCTTCCGAGGACTCACTGGGGTAGG AGCTCTGGGGAGGTTCGCTTCAGAGGACTCACTGGGGTAGG < 41bp 0.573512677564566 0.813715625568935 0.8999778 0.8994628 prediction 0.480405896008739 Functional Gain - LEXM ENSG00000162398 CDS Human protein_coding chr1:55273669 chr1:55273670 synonymous SNV . 0 22 hm5C_associated_SNPs_111219 0 0 0 0 1 LEXM chr1:55273684 5'GT 55273684 Upstream 15bp
chr19 55107330 55107330 1 + A G LUSC 55107327 + 55107307 55107347 41 CGCTCCTACGGGGGCCAGTACAGATGCTCCGGTGCATACAA CGCTCCTACGGGGGCCAGTACAGGTGCTCCGGTGCATACAA < 41bp 0.546165749806861 0.786364179455079 0.49035725 0.89858246 prediction 0.480396859296437 Functional Gain - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55107327 chr19:55107330 synonymous SNV . 0 24 hm5C_associated_SNPs_111220 0 0 0 0 1 LILRA1 chr19:55107400 5'GT 55107400 Upstream 71bp
chr5 154183804 154183804 1 + T C UCEC 154183802 + 154183782 154183822 41 AGACACAGTTCAAACCCACCCTTGGAGAGCCATGTGGGCTG AGACACAGTTCAAACCCACCCTCGGAGAGCCATGTGGGCTG < 41bp 0.453304699351737 0.740197700103743 0.049637973 0.077216715 prediction 0.480395400207487 Functional Gain - LARP1 ENSG00000155506 CDS Human protein_coding chr5:154183802 chr5:154183804 nonsynonymous SNV 0.952 1 23 hm5C_associated_SNPs_111221 0 0 1 0 2 LARP1 chr5:154183761 3'AG 154183761 Downstream 44bp
chr5 154183804 154183804 1 + T C UCEC 154183802 + 154183782 154183822 41 AGACACAGTTCAAACCCACCCTTGGAGAGCCATGTGGGCTG AGACACAGTTCAAACCCACCCTCGGAGAGCCATGTGGGCTG < 41bp 0.453304699351737 0.740197700103743 0.049637973 0.077216715 prediction 0.480395400207487 Functional Gain - LARP1 ENSG00000155506 CDS Human protein_coding chr5:154183802 chr5:154183804 nonsynonymous SNV 0.952 1 23 hm5C_associated_SNPs_111221 0 0 1 0 2 LARP1 chr5:154183867 5'GT 154183867 Upstream 64bp
chr14 31358870 31358870 1 + T G HNSC 31358868 + 31358848 31358888 41 GCTTGGGCACCTCTGGATGACCTGAAAGATATGGCTTCTAA GCTTGGGCACCTCTGGATGACCGGAAAGATATGGCTTCTAA < 41bp 0.418613023023502 0.740191153612506 0.09665689 0.28128862 prediction 0.480382307225012 Functional Gain - COCH ENSG00000100473 CDS Human protein_coding chr14:31358868 chr14:31358870 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_111223 0 0 1 0 1 COCH chr14:31358822 3'AG 31358822 Downstream 49bp
chr17 33313129 33313129 1 + C T rs3744356 33313128 + 33313108 33313148 41 TTTGTCACCAGTACCAATCCCCGGAAATTTTCTGGCTTTTC TTTGTCACCAGTACCAATCCCTGGAAATTTTCTGGCTTTTC < 41bp 0.495496201699852 0.740184130402623 0.17089483 0.1239351 prediction 0.480368260805245 Functional Gain - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33313128 chr17:33313129 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_111225 0 0 1 0 1 LIG3 chr17:33313150 5'GT 33313150 Upstream 22bp
chrX 79279654 79279654 1 + A G UCEC 79279651 + 79279631 79279671 41 CGATGTGGTGCCGGTGGATTCCAAACGCTATAGGTAATGGG CGATGTGGTGCCGGTGGATTCCAGACGCTATAGGTAATGGG < 41bp 0.502224831592774 0.742407557169041 0.81455994 0.8943475 prediction 0.480365451152535 Functional Gain - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79279651 chrX:79279654 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_111226 0 0 0 0 2 TBX22 chrX:79279562 3'AG 79279562 Downstream 93bp
chrX 79279654 79279654 1 + A G UCEC 79279651 + 79279631 79279671 41 CGATGTGGTGCCGGTGGATTCCAAACGCTATAGGTAATGGG CGATGTGGTGCCGGTGGATTCCAGACGCTATAGGTAATGGG < 41bp 0.502224831592774 0.742407557169041 0.81455994 0.8943475 prediction 0.480365451152535 Functional Gain - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79279651 chrX:79279654 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_111226 0 0 0 0 2 TBX22 chrX:79279663 5'GT 79279663 Upstream 10bp
chrX 16170416 16170416 1 + T A LUAD 16170412 + 16170392 16170432 41 AGCGACTTGCCAAGACAGTGCTGGTGTTTGTGGGCCTGTTC AGCGACTTGCCAAGACAGTGCTGGAGTTTGTGGGCCTGTTC < 41bp 0.628020247945139 0.868201987660411 0.41932666 0.78469574 prediction 0.480363479430545 Functional Gain - GRPR ENSG00000126010 CDS Human protein_coding chrX:16170412 chrX:16170416 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_111227 0 0 0 0 1 GRPR chrX:16170379 3'AG 16170379 Downstream 38bp
chr11 75428949 75428949 1 + C A OV 75428945 + 75428925 75428965 41 CCCGCCAGCATGGTAGAGTTCGCGCCCTTGTTTATGCCGTG CCCGCCAGCATGGTAGAGTTCGCGACCTTGTTTATGCCGTG < 41bp 0.675281222414023 0.915458395896405 0.24136609 0.34574783 prediction 0.480354346964765 Functional Gain - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75428945 chr11:75428949 nonsynonymous SNV 0.044 4 25 hm5C_associated_SNPs_111228 0 0 0 0 1 MOGAT2 chr11:75429024 5'GT 75429024 Upstream 76bp
chr16 81727074 81727074 1 + C T UCEC 81727073 + 81727053 81727093 41 GTACGTGATTCAGAGGTTCGCCGAAGACCCCAGGCAAGAGG GTACGTGATTCAGAGGTTCGCTGAAGACCCCAGGCAAGAGG < 41bp 0.528826162167665 0.768998909815026 0.48245195 0.33206058 prediction 0.480345495294721 Functional Gain - CMIP ENSG00000153815 CDS Human protein_coding chr16:81727073 chr16:81727074 synonymous SNV . 0 22 hm5C_associated_SNPs_111230 0 0 1 0 2 CMIP chr16:81727044 3'AG 81727044 Downstream 31bp
chr16 81727074 81727074 1 + C T UCEC 81727073 + 81727053 81727093 41 GTACGTGATTCAGAGGTTCGCCGAAGACCCCAGGCAAGAGG GTACGTGATTCAGAGGTTCGCTGAAGACCCCAGGCAAGAGG < 41bp 0.528826162167665 0.768998909815026 0.48245195 0.33206058 prediction 0.480345495294721 Functional Gain - CMIP ENSG00000153815 CDS Human protein_coding chr16:81727073 chr16:81727074 synonymous SNV . 0 22 hm5C_associated_SNPs_111230 0 0 1 0 2 CMIP chr16:81727092 5'GT 81727092 Upstream 19bp
chrX 48661159 48661159 1 + C A COAD 48661158 + 48661138 48661178 41 GCGAAGAAGTAGGCAGAACCCCCAGTCGCCCCCTCAGGACT GCGAAGAAGTAGGCAGAACCCACAGTCGCCCCCTCAGGACT < 41bp 0.514682130610005 0.754834840052824 0.13126695 0.19298512 prediction 0.480305418885639 Functional Gain - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48661158 chrX:48661159 synonymous SNV . 0 22 hm5C_associated_SNPs_111236 0 0 1 0 2 HDAC6 chrX:48661070 3'AG 48661070 Downstream 90bp
chrX 48661159 48661159 1 + C A COAD 48661158 + 48661138 48661178 41 GCGAAGAAGTAGGCAGAACCCCCAGTCGCCCCCTCAGGACT GCGAAGAAGTAGGCAGAACCCACAGTCGCCCCCTCAGGACT < 41bp 0.514682130610005 0.754834840052824 0.13126695 0.19298512 prediction 0.480305418885639 Functional Gain - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48661158 chrX:48661159 synonymous SNV . 0 22 hm5C_associated_SNPs_111236 0 0 1 0 2 HDAC6 chrX:48661192 5'GT 48661192 Upstream 34bp
chr12 108604076 108604076 1 + C T UCEC 108604075 + 108604055 108604095 41 CAGCTGGCCCAGGAGTCGGCCCGCAGGTGTACGTGAGTCTG CAGCTGGCCCAGGAGTCGGCCTGCAGGTGTACGTGAGTCTG < 41bp 0.514832290912476 0.754974121210288 0.37219086 0.41881388 prediction 0.480283660595624 Functional Gain - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108604075 chr12:108604076 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_111238 0 0 0 0 1 WSCD2 chr12:108604082 5'GT 108604082 Upstream 7bp
chr1 217947760 217947760 1 + C T STAD 217947759 + 217947739 217947779 41 AAGGCAAAGCCTTTAACACACCGAAGACCTAAAGTTAAGCA AAGGCAAAGCCTTTAACACACTGAAGACCTAAAGTTAAGCA < 41bp 0.496490464676602 0.740139096473285 0.033194423 0.03673169 prediction 0.480278192946571 Functional Gain - SPATA17 ENSG00000162814 CDS Human protein_coding chr1:217947759 chr1:217947760 stopgain 0.003 0 22 hm5C_associated_SNPs_111239 0 0 0 0 1 SPATA17 chr1:217947676 3'AG 217947676 Downstream 85bp
chr12 69651683 69651683 1 + C T SKCM 69651682 + 69651662 69651702 41 GAGGGCCACCCCCACCTTTTCCAGGTAAAACTTTTCTTAAA GAGGGCCACCCCCACCTTTTCTAGGTAAAACTTTTCTTAAA < 41bp 0.504745293526805 0.744879183071313 0.91920924 0.88448685 prediction 0.480267779089015 Functional Gain - CPSF6 ENSG00000111605 CDS Human protein_coding chr12:69651682 chr12:69651683 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_111240 0 0 1 0 1 CPSF6 chr12:69651685 5'GT 69651685 Upstream 3bp
chrX 130220377 130220377 1 + A G SKCM 130220374 + 130220354 130220394 41 CCGGAAGCACTTGATTTTATCAGACGCAGGAACTTGAGGAA CCGGAAGCACTTGATTTTATCAGGCGCAGGAACTTGAGGAA < 41bp 0.512207515775846 0.752340656309883 0.90355223 0.9309461 prediction 0.480266281068073 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220374 chrX:130220377 synonymous SNV . 0 24 hm5C_associated_SNPs_111241 0 0 0 0 2 ARHGAP36 chrX:130220303 3'AG 130220303 Downstream 75bp
chrX 130220377 130220377 1 + A G SKCM 130220374 + 130220354 130220394 41 CCGGAAGCACTTGATTTTATCAGACGCAGGAACTTGAGGAA CCGGAAGCACTTGATTTTATCAGGCGCAGGAACTTGAGGAA < 41bp 0.512207515775846 0.752340656309883 0.90355223 0.9309461 prediction 0.480266281068073 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220374 chrX:130220377 synonymous SNV . 0 24 hm5C_associated_SNPs_111241 0 0 0 0 2 ARHGAP36 chrX:130220400 5'GT 130220400 Upstream 24bp
chr3 127785866 127785866 1 + C A UCEC 127785862 + 127785842 127785882 41 CAGTACAACACCTATCCCATCAAGCTCTTCTATACGTCCAA CAGTACAACACCTATCCCATCAAGATCTTCTATACGTCCAA < 41bp 0.330105682990643 0.74013307983245 0.118398905 0.238951 prediction 0.480266159664899 Functional Gain - SEC61A1 ENSG00000058262 CDS Human protein_coding chr3:127785862 chr3:127785866 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_111242 0 0 1 0 1 SEC61A1 chr3:127785797 3'AG 127785797 Downstream 70bp
chr16 2474652 2474652 1 + C G LUSC 2474651 + 2474631 2474671 41 AGTTCAAGTGCCTGGGCAGCCCCCAGCACCTCAAGAGCAAG AGTTCAAGTGCCTGGGCAGCCGCCAGCACCTCAAGAGCAAG < 41bp 0.602710867334127 0.842841626943172 0.25700954 0.58251435 prediction 0.480261519218089 Functional Gain - ABCA17P ENSG00000238098 ncRNA_exonic Human transcribed_unitary_pseudogene chr16:2474651 chr16:2474652 . . 0 22 hm5C_associated_SNPs_111245 0 0 0 0 1 ABCA17P chr16:2474579 3'AG 2474579 Downstream 74bp
chr1 201294897 201294897 1 + C T UCEC 201294896 + 201294876 201294916 41 GCCCAGTGCCTCACCCAAGGCCGCAGAAGCTGCCCGGCTTC GCCCAGTGCCTCACCCAAGGCTGCAGAAGCTGCCCGGCTTC < 41bp 0.550183526701816 0.790311061256992 0.31184077 0.38831818 prediction 0.480255069110352 Functional Gain - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201294896 chr1:201294897 synonymous SNV . 0 22 hm5C_associated_SNPs_111246 0 0 0 0 2 PKP1 chr1:201294882 3'AG 201294882 Downstream 16bp
chr1 201294897 201294897 1 + C T UCEC 201294896 + 201294876 201294916 41 GCCCAGTGCCTCACCCAAGGCCGCAGAAGCTGCCCGGCTTC GCCCAGTGCCTCACCCAAGGCTGCAGAAGCTGCCCGGCTTC < 41bp 0.550183526701816 0.790311061256992 0.31184077 0.38831818 prediction 0.480255069110352 Functional Gain - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201294896 chr1:201294897 synonymous SNV . 0 22 hm5C_associated_SNPs_111246 0 0 0 0 2 PKP1 chr1:201294966 5'GT 201294966 Upstream 70bp
chr7 45928591 45928591 1 + C G rs41258845 45928590 + 45928570 45928610 41 GAGTCTGACGCCTCCGCTCCCCATGCTGCAGGTACCACAGT GAGTCTGACGCCTCCGCTCCCGATGCTGCAGGTACCACAGT < 41bp 0.434273839512111 0.740121238584267 0.028024822 0.11407256 prediction 0.480242477168533 Functional Gain - IGFBP1 ENSG00000146678 CDS Human protein_coding chr7:45928590 chr7:45928591 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_111248 0 0 1 0 1 IGFBP1 chr7:45928600 5'GT 45928600 Upstream 10bp
chrX 47442890 47442890 1 + T A LGG 47442886 + 47442866 47442906 41 ATAGCCCCCAGCAGGGCCTGCACCTGTGTCCCACCCCACCC ATAGCCCCCAGCAGGGCCTGCACCAGTGTCCCACCCCACCC < 41bp 0.599215811405826 0.839334172840179 0.12193149 0.2638924 prediction 0.480236722868705 Functional Gain - TIMP1 ENSG00000102265 CDS Human protein_coding chrX:47442886 chrX:47442890 nonsynonymous SNV 0.993 5 25 hm5C_associated_SNPs_111249 0 0 1 0 2 TIMP1 chrX:47442807 3'AG 47442807 Downstream 84bp
chrX 47442890 47442890 1 + T A LGG 47442886 + 47442866 47442906 41 ATAGCCCCCAGCAGGGCCTGCACCTGTGTCCCACCCCACCC ATAGCCCCCAGCAGGGCCTGCACCAGTGTCCCACCCCACCC < 41bp 0.599215811405826 0.839334172840179 0.12193149 0.2638924 prediction 0.480236722868705 Functional Gain - TIMP1 ENSG00000102265 CDS Human protein_coding chrX:47442886 chrX:47442890 nonsynonymous SNV 0.993 5 25 hm5C_associated_SNPs_111249 0 0 1 0 2 TIMP1 chrX:47442935 5'GT 47442935 Upstream 46bp
chr3 128627081 128627081 1 + C T UCEC 128627080 + 128627060 128627100 41 CCTGACGGGTCTGCAGCATGCCGGCCGCATCCTGACTACCA CCTGACGGGTCTGCAGCATGCTGGCCGCATCCTGACTACCA < 41bp 0.51236540523806 0.752483326961841 0.30321527 0.13363928 prediction 0.480235843447563 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128627080 chr3:128627081 synonymous SNV . 0 22 hm5C_associated_SNPs_111250 0 0 1 0 2 ACAD9 chr3:128627028 3'AG 128627028 Downstream 54bp
chr3 128627081 128627081 1 + C T UCEC 128627080 + 128627060 128627100 41 CCTGACGGGTCTGCAGCATGCCGGCCGCATCCTGACTACCA CCTGACGGGTCTGCAGCATGCTGGCCGCATCCTGACTACCA < 41bp 0.51236540523806 0.752483326961841 0.30321527 0.13363928 prediction 0.480235843447563 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128627080 chr3:128627081 synonymous SNV . 0 22 hm5C_associated_SNPs_111250 0 0 1 0 2 ACAD9 chr3:128627107 5'GT 128627107 Upstream 27bp
chrX 153420174 153420174 1 + T C UCEC 153420172 + 153420152 153420192 41 TGCATCATCCCACTCGCTATCATCATGCTCTGCTACCTCCA TGCATCATCCCACTCGCTATCACCATGCTCTGCTACCTCCA < 41bp 0.587998325144158 0.828113920688418 0.5154787 0.40858835 prediction 0.480231191088519 Functional Gain - OPN1LW ENSG00000102076 CDS Human protein_coding chrX:153420172 chrX:153420174 nonsynonymous SNV 0.282 2 23 hm5C_associated_SNPs_111251 0 0 0 0 1 OPN1LW chrX:153420214 5'GT 153420214 Upstream 41bp
chr9 101594124 101594124 1 + C A UCEC 101594123 + 101594103 101594143 41 GACTGGAACACCTTCGAATACCTGGGGAACTCCGGGGAGCC GACTGGAACACCTTCGAATACATGGGGAACTCCGGGGAGCC < 41bp 0.551127894345802 0.791236351684021 0.40300632 0.30152535 prediction 0.480216914676439 Functional Gain - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101594123 chr9:101594124 nonsynonymous SNV 0.983 1 22 hm5C_associated_SNPs_111254 0 0 1 0 1 GALNT12 chr9:101594054 3'AG 101594054 Downstream 71bp
chr19 51631230 51631230 1 + A G STAD 51631227 + 51631207 51631247 41 CAAAGCCACATCAGGAGTGACTCAGGGGGTGGTCGGGGGAG CAAAGCCACATCAGGAGTGACTCGGGGGGTGGTCGGGGGAG < 41bp 0.513339199490828 0.753433354989755 0.20814574 0.41686288 prediction 0.480188310997854 Functional Gain - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51631227 chr19:51631230 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_111255 0 0 0 0 2 SIGLEC9 chr19:51631206 3'AG 51631206 Downstream 25bp
chr19 51631230 51631230 1 + A G STAD 51631227 + 51631207 51631247 41 CAAAGCCACATCAGGAGTGACTCAGGGGGTGGTCGGGGGAG CAAAGCCACATCAGGAGTGACTCGGGGGGTGGTCGGGGGAG < 41bp 0.513339199490828 0.753433354989755 0.20814574 0.41686288 prediction 0.480188310997854 Functional Gain - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51631227 chr19:51631230 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_111255 0 0 0 0 2 SIGLEC9 chr19:51631296 5'GT 51631296 Upstream 67bp
chr19 3207654 3207654 1 + C A UCEC 3207653 + 3207633 3207673 41 AGCCTCCTCTACAAGACCGTCCAGAGGCTGCTCGTGAAGGC AGCCTCCTCTACAAGACCGTCAAGAGGCTGCTCGTGAAGGC < 41bp 0.488376600868107 0.740093499020825 0.39304635 0.4792204 prediction 0.48018699804165 Functional Gain - NCLN ENSG00000125912 CDS Human protein_coding chr19:3207653 chr19:3207654 nonsynonymous SNV 0.682 0 22 hm5C_associated_SNPs_111256 0 0 1 0 2 NCLN chr19:3207627 3'AG 3207627 Downstream 28bp
chr19 3207654 3207654 1 + C A UCEC 3207653 + 3207633 3207673 41 AGCCTCCTCTACAAGACCGTCCAGAGGCTGCTCGTGAAGGC AGCCTCCTCTACAAGACCGTCAAGAGGCTGCTCGTGAAGGC < 41bp 0.488376600868107 0.740093499020825 0.39304635 0.4792204 prediction 0.48018699804165 Functional Gain - NCLN ENSG00000125912 CDS Human protein_coding chr19:3207653 chr19:3207654 nonsynonymous SNV 0.682 0 22 hm5C_associated_SNPs_111256 0 0 1 0 2 NCLN chr19:3207745 5'GT 3207745 Upstream 92bp
chr18 43224063 43224063 1 + C A LUAD 43224062 + 43224042 43224082 41 CACTCAGCAAAGTCACCTACCCCGAGGCCAACCGCATCTAC CACTCAGCAAAGTCACCTACCACGAGGCCAACCGCATCTAC < 41bp 0.538840306678921 0.778930542188548 0.06495461 0.06152302 prediction 0.480180471019255 Functional Gain - SLC14A2 ENSG00000132874 CDS Human protein_coding chr18:43224062 chr18:43224063 nonsynonymous SNV 0.988 4 22 hm5C_associated_SNPs_111257 0 0 0 0 1 SLC14A2 chr18:43224125 5'GT 43224125 Upstream 63bp
chr11 47605951 47605951 1 + C T SKCM 47605950 + 47605930 47605970 41 GCAAATTTGACCTGAACAGCCCCTGGGAGGCTTTCCCAGTC GCAAATTTGACCTGAACAGCCTCTGGGAGGCTTTCCCAGTC < 41bp 0.485946788366511 0.740078644944948 0.15001458 0.19481865 prediction 0.480157289889897 Functional Gain - NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47605950 chr11:47605951 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_111260 0 0 1 0 1 NDUFS3 chr11:47605866 3'AG 47605866 Downstream 86bp
chr6 158514091 158514091 1 + C A THCA 158514090 + 158514070 158514110 41 CCTTCCCCGTCGGCCCCCACCCAGAGTTCCTGCCATCAAGA CCTTCCCCGTCGGCCCCCACCAAGAGTTCCTGCCATCAAGA < 41bp 0.482803356138277 0.740075947461717 0.74045736 0.5165618 prediction 0.480151894923435 Functional Gain - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158514090 chr6:158514091 synonymous SNV . 0 22 hm5C_associated_SNPs_111261 0 0 1 0 1 SYNJ2 chr6:158514136 5'GT 158514136 Upstream 46bp
chr2 44100945 44100945 1 + T A SKCM 44100941 + 44100921 44100961 41 TTAAGTCGTCAGATTTCCAACGACTTCCGAGACCTGCCCAC TTAAGTCGTCAGATTTCCAACGACATCCGAGACCTGCCCAC < 41bp 0.405865393475004 0.740073609553855 0.24095601 0.27857655 prediction 0.48014721910771 Functional Gain - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44100941 chr2:44100945 nonsynonymous SNV 0.992 1 25 hm5C_associated_SNPs_111262 0 0 0 0 1 ABCG8 chr2:44100926 3'AG 44100926 Downstream 20bp
chr3 129238525 129238525 1 + C T UCEC 129238524 + 129238504 129238544 41 CCCCTGAGGTGGCAATACTTCCGCTCACTGCTGCCTGACGC CCCCTGAGGTGGCAATACTTCTGCTCACTGCTGCCTGACGC < 41bp 0.501922435453875 0.74198163785462 0.08107144 0.061943084 prediction 0.480118404801489 Functional Gain - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129238524 chr3:129238525 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_111268 0 0 0 0 1 IFT122 chr3:129238575 5'GT 129238575 Upstream 51bp
chr3 140979081 140979081 1 + C T UCEC 140979080 + 140979060 140979100 41 GCGCTGCTGGCCTTTGTGAGCCTCAGCCTGCAGTTCTGTGA GCGCTGCTGGCCTTTGTGAGCTTCAGCCTGCAGTTCTGTGA < 41bp 0.535537941888342 0.775586094031299 0.095133275 0.09182325 prediction 0.480096304285914 Functional Gain - PXYLP1 ENSG00000155893 CDS Human protein_coding chr3:140979080 chr3:140979081 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_111270 0 0 1 0 1 PXYLP1 chr3:140979096 5'GT 140979096 Upstream 16bp
chr10 16528558 16528558 1 + C T COAD 16528557 + 16528537 16528577 41 AGGGCACCATTTCAGATTATCCGAATATTGCAAGAAGCAGG AGGGCACCATTTCAGATTATCTGAATATTGCAAGAAGCAGG < 41bp 0.532688774722609 0.772726794220087 0.059458703 0.028570771 prediction 0.480076038994956 Functional Gain - PTER ENSG00000165983 CDS Human protein_coding chr10:16528557 chr10:16528558 stopgain 0.885 1 22 hm5C_associated_SNPs_111272 0 0 0 0 1 PTER chr10:16528616 5'GT 16528616 Upstream 59bp
chr5 150838456 150838456 1 + C T SKCM 150838455 + 150838435 150838475 41 GGCCTCAACAACCTCTCCTCCCCGGGCTCCTACCAGCGCTT GGCCTCAACAACCTCTCCTCCTCGGGCTCCTACCAGCGCTT < 41bp 0.487976370169915 0.740029223852159 0.4872517 0.25576338 prediction 0.480058447704318 Functional Gain - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150838455 chr5:150838456 nonsynonymous SNV 0.076 0 22 hm5C_associated_SNPs_111277 0 0 1 0 1 SLC36A1 chr5:150838496 5'GT 150838496 Upstream 41bp
chr3 19389422 19389422 1 + T C STAD 19389420 + 19389400 19389440 41 TCCACAACTCGGAGCACAACCGTCAGTGACATTGCAGTGGA TCCACAACTCGGAGCACAACCGCCAGTGACATTGCAGTGGA < 41bp 0.544785086914776 0.784811533634907 0.13669872 0.3606674 prediction 0.480052893440262 Functional Gain - KCNH8 ENSG00000183960 CDS Human protein_coding chr3:19389420 chr3:19389422 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_111278 0 0 0 0 1 KCNH8 chr3:19389457 5'GT 19389457 Upstream 36bp
chr9 139229108 139229108 1 + T C rs139175448 139229106 + 139229086 139229126 41 GGGCGCTGGAATACCACAAGCATGACCTCCTGCTGGCGCGG GGGCGCTGGAATACCACAAGCACGACCTCCTGCTGGCGCGG < 41bp 0.550680302840118 0.790706505993242 0.1557104 0.17738631 prediction 0.480052406306248 Functional Gain - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139229106 chr9:139229108 synonymous SNV . 0 23 hm5C_associated_SNPs_111279 0 0 0 0 1 GPSM1 chr9:139229125 5'GT 139229125 Upstream 18bp
chr17 79987052 79987052 1 + C T rs200279065 79987051 + 79987031 79987071 41 GCTGGAGGCGGCGCGGCTGTCCCTGGAGGAGGTGAGTGCCC GCTGGAGGCGGCGCGGCTGTCTCTGGAGGAGGTGAGTGCCC < 41bp 0.491163828403909 0.740021514627107 0.21682099 0.26630402 prediction 0.480043029254213 Functional Gain - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79987051 chr17:79987052 synonymous SNV . 0 22 hm5C_associated_SNPs_111281 0 0 1 0 2 LRRC45 chr17:79986969 3'AG 79986969 Downstream 84bp
chr17 79987052 79987052 1 + C T rs200279065 79987051 + 79987031 79987071 41 GCTGGAGGCGGCGCGGCTGTCCCTGGAGGAGGTGAGTGCCC GCTGGAGGCGGCGCGGCTGTCTCTGGAGGAGGTGAGTGCCC < 41bp 0.491163828403909 0.740021514627107 0.21682099 0.26630402 prediction 0.480043029254213 Functional Gain - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79987051 chr17:79987052 synonymous SNV . 0 22 hm5C_associated_SNPs_111281 0 0 1 0 2 LRRC45 chr17:79987061 5'GT 79987061 Upstream 10bp
chr5 139218355 139218355 1 + C A LUAD 139218354 + 139218334 139218374 41 TCCTGCACCACCCGCCTCTGCCAGGTACATGTTCCTGGGTC TCCTGCACCACCCGCCTCTGCAAGGTACATGTTCCTGGGTC < 41bp 0.538316121729185 0.778333897675758 0.88806635 0.8500657 prediction 0.480035551893147 Functional Gain - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139218354 chr5:139218355 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_111284 0 0 0 0 1 PSD2 chr5:139218357 5'GT 139218357 Upstream 3bp
chr11 126147394 126147394 1 + C G BRCA 126147393 + 126147373 126147413 41 ACCAGAATGGCGTGGTGGGCCCCCACCCGCTAGTTGTCAAC ACCAGAATGGCGTGGTGGGCCGCCACCCGCTAGTTGTCAAC < 41bp 0.616294181700787 0.856307137035733 0.034813136 0.31167924 prediction 0.480025910669894 Functional Gain - FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126147393 chr11:126147394 nonsynonymous SNV 0.991 2 22 hm5C_associated_SNPs_111287 0 0 0 0 1 FOXRED1 chr11:126147330 3'AG 126147330 Downstream 65bp
chr8 87568537 87568537 1 + C T SKCM 87568536 + 87568516 87568556 41 GTGGCCATCAGAGATATTGTCCAGTTTGTGCCTTTCAGACA GTGGCCATCAGAGATATTGTCTAGTTTGTGCCTTTCAGACA < 41bp 0.50924577190513 0.749242888379065 0.34306192 0.27993113 prediction 0.479994232947871 Functional Gain - CPNE3 ENSG00000085719 CDS Human protein_coding chr8:87568536 chr8:87568537 stopgain 1.000 1 22 hm5C_associated_SNPs_111291 0 0 1 0 1 CPNE3 chr8:87568566 5'GT 87568566 Upstream 30bp
chr1 158152735 158152735 1 + T C STAD 158152733 + 158152713 158152753 41 GCCGTCTGCTGCTGGTGTGCCATGTCTCAGGATTCTACCCA GCCGTCTGCTGCTGGTGTGCCACGTCTCAGGATTCTACCCA < 41bp 0.473404510780086 0.739996864682753 0.04354784 0.022909999 prediction 0.479993729365506 Functional Gain - CD1D ENSG00000158473 CDS Human protein_coding chr1:158152733 chr1:158152735 synonymous SNV . 0 23 hm5C_associated_SNPs_111292 0 0 0 0 1 CD1D chr1:158152668 3'AG 158152668 Downstream 68bp
chr8 109489022 109489022 1 + C T KIRP 109489021 + 109489001 109489041 41 TTTTTAACAGGTTAAGTATACCCAAGGTGGACTTGAAAACC TTTTTAACAGGTTAAGTATACTCAAGGTGGACTTGAAAACC < 41bp 0.508082578971313 0.748070975813544 0.022101164 0.0429613 prediction 0.479976793684463 Functional Gain - EMC2 ENSG00000104412 CDS Human protein_coding chr8:109489021 chr8:109489022 synonymous SNV . 0 22 hm5C_associated_SNPs_111294 0 0 1 0 2 EMC2 chr8:109489011 3'AG 109489011 Downstream 12bp
chr8 109489022 109489022 1 + C T KIRP 109489021 + 109489001 109489041 41 TTTTTAACAGGTTAAGTATACCCAAGGTGGACTTGAAAACC TTTTTAACAGGTTAAGTATACTCAAGGTGGACTTGAAAACC < 41bp 0.508082578971313 0.748070975813544 0.022101164 0.0429613 prediction 0.479976793684463 Functional Gain - EMC2 ENSG00000104412 CDS Human protein_coding chr8:109489021 chr8:109489022 synonymous SNV . 0 22 hm5C_associated_SNPs_111294 0 0 1 0 2 EMC2 chr8:109489121 5'GT 109489121 Upstream 100bp
chr21 45713771 45713771 1 + C T SKCM 45713770 + 45713750 45713790 41 TTCCACTGGCGCTGCCACTTCCCAGCCGGCACCTCCCGGCC TTCCACTGGCGCTGCCACTTCTCAGCCGGCACCTCCCGGCC < 41bp 0.52792730091911 0.767905024469238 0.20835182 0.21317688 prediction 0.479955447100256 Functional Gain - AIRE ENSG00000160224 CDS Human protein_coding chr21:45713770 chr21:45713771 nonsynonymous SNV 0.631 2 22 hm5C_associated_SNPs_111296 0 0 0 0 2 AIRE chr21:45713672 3'AG 45713672 Downstream 100bp
chr21 45713771 45713771 1 + C T SKCM 45713770 + 45713750 45713790 41 TTCCACTGGCGCTGCCACTTCCCAGCCGGCACCTCCCGGCC TTCCACTGGCGCTGCCACTTCTCAGCCGGCACCTCCCGGCC < 41bp 0.52792730091911 0.767905024469238 0.20835182 0.21317688 prediction 0.479955447100256 Functional Gain - AIRE ENSG00000160224 CDS Human protein_coding chr21:45713770 chr21:45713771 nonsynonymous SNV 0.631 2 22 hm5C_associated_SNPs_111296 0 0 0 0 2 AIRE chr21:45713793 5'GT 45713793 Upstream 23bp
chr3 65879553 65879553 1 + C A rs264671 65879549 + 65879529 65879569 41 ATCTTACACTGGGAAGACTGCAGGCAACTCAATGGCCCAGG ATCTTACACTGGGAAGACTGCAGGAAACTCAATGGCCCAGG < 41bp 0.649477483232889 0.889455107343248 0.9130466 0.9179992 prediction 0.479955248220717 Functional Gain - MAGI1-AS1 ENSG00000240175 ncRNA_exonic Human antisense chr3:65879549 chr3:65879553 . . 0 25 hm5C_associated_SNPs_111297 0 0 0 0 1 MAGI1-AS1 chr3:65879592 5'GT 65879592 Upstream 40bp
chr6 43267465 43267465 1 + C T UCEC 43267464 + 43267444 43267484 41 TATGTAATGTTTGCCATCACCCGCACCCTTACTGGCTCAGC TATGTAATGTTTGCCATCACCTGCACCCTTACTGGCTCAGC < 41bp 0.558174211429241 0.798151064732926 0.11328277 0.225936 prediction 0.479953706607372 Functional Gain - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43267464 chr6:43267465 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_111298 0 0 0 0 1 SLC22A7 chr6:43267519 5'GT 43267519 Upstream 55bp
chr20 17417358 17417358 1 + C A LUAD 17417357 + 17417337 17417377 41 CTCAACGTGTCCACAGGCATCCGGATGCTGGACCAGCCATT CTCAACGTGTCCACAGGCATCAGGATGCTGGACCAGCCATT < 41bp 0.549474848270636 0.789449832549252 0.88593805 0.9018835 prediction 0.479949968557232 Functional Gain - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17417357 chr20:17417358 synonymous SNV . 0 22 hm5C_associated_SNPs_111300 0 0 0 0 1 PCSK2 chr20:17417353 3'AG 17417353 Downstream 6bp
chr16 58312400 58312400 1 + C T rs150335788 58312399 + 58312379 58312419 41 AACCCAGGACCGGGCCAAAGCCGAGGCAGTGAATAAGAGGC AACCCAGGACCGGGCCAAAGCTGAGGCAGTGAATAAGAGGC < 41bp 0.498969804298092 0.739964094663847 0.58740705 0.29582778 prediction 0.479928189327695 Functional Gain - CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58312399 chr16:58312400 synonymous SNV . 0 22 hm5C_associated_SNPs_111305 0 0 0 0 1 CCDC113 chr16:58312386 3'AG 58312386 Downstream 15bp
chr2 23916217 23916217 1 + T A ESCA 23916213 + 23916193 23916233 41 TGCAGTGCAGCGAGCTCTACCACATGGCCAAGGCCTTCGCG TGCAGTGCAGCGAGCTCTACCACAAGGCCAAGGCCTTCGCG < 41bp 0.422278300709822 0.739961408426499 0.63249815 0.563529 prediction 0.479922816852999 Functional Gain - KLHL29 ENSG00000119771 CDS Human protein_coding chr2:23916213 chr2:23916217 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_111307 0 0 0 0 1 KLHL29 chr2:23916139 3'AG 23916139 Downstream 79bp
chr17 45668159 45668159 1 + C T SKCM 45668158 + 45668138 45668178 41 TGTGTGTAGACCACTGCTTCCCAGAGTATGATATTTGGACT TGTGTGTAGACCACTGCTTCCTAGAGTATGATATTTGGACT < 41bp 0.479468339738002 0.73995803013253 0.2080364 0.066073924 prediction 0.47991606026506 Functional Gain - NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45668158 chr17:45668159 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111308 0 0 0 0 2 NPEPPS chr17:45668083 3'AG 45668083 Downstream 77bp
chr17 45668159 45668159 1 + C T SKCM 45668158 + 45668138 45668178 41 TGTGTGTAGACCACTGCTTCCCAGAGTATGATATTTGGACT TGTGTGTAGACCACTGCTTCCTAGAGTATGATATTTGGACT < 41bp 0.479468339738002 0.73995803013253 0.2080364 0.066073924 prediction 0.47991606026506 Functional Gain - NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45668158 chr17:45668159 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111308 0 0 0 0 2 NPEPPS chr17:45668247 5'GT 45668247 Upstream 89bp
chr9 71094402 71094402 1 + C T HNSC 71094401 + 71094381 71094421 41 TGGCTCTCCATTATTGCTGCCCGGAAGCAGAGTGTGGAGGA TGGCTCTCCATTATTGCTGCCTGGAAGCAGAGTGTGGAGGA < 41bp 0.536988223065169 0.776923729813576 0.28985208 0.26528233 prediction 0.479871013496812 Functional Gain - PGM5 ENSG00000154330 CDS Human protein_coding chr9:71094401 chr9:71094402 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111314 0 0 1 0 2 PGM5 chr9:71094334 3'AG 71094334 Downstream 69bp
chr9 71094402 71094402 1 + C T HNSC 71094401 + 71094381 71094421 41 TGGCTCTCCATTATTGCTGCCCGGAAGCAGAGTGTGGAGGA TGGCTCTCCATTATTGCTGCCTGGAAGCAGAGTGTGGAGGA < 41bp 0.536988223065169 0.776923729813576 0.28985208 0.26528233 prediction 0.479871013496812 Functional Gain - PGM5 ENSG00000154330 CDS Human protein_coding chr9:71094401 chr9:71094402 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111314 0 0 1 0 2 PGM5 chr9:71094469 5'GT 71094469 Upstream 68bp
chr1 20672022 20672022 1 + C A UCEC 20672018 + 20671998 20672038 41 CAACATCATTAGCAAATACACAGCCTTCGTGCCTGTGGACG CAACATCATTAGCAAATACACAGCATTCGTGCCTGTGGACG < 41bp 0.316763455502944 0.739932173718627 0.061716557 0.089692414 prediction 0.479864347437255 Functional Gain - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20672018 chr1:20672022 synonymous SNV . 0 25 hm5C_associated_SNPs_111316 0 0 0 0 1 VWA5B1 chr1:20672086 5'GT 20672086 Upstream 65bp
chr18 12030360 12030360 1 + T A OV 12030356 + 12030336 12030376 41 CCCCAGGTGGACCCCTCGACCTCATGGCTTGCAGAGTGGTT CCCCAGGTGGACCCCTCGACCTCAAGGCTTGCAGAGTGGTT < 41bp 0.415112130233346 0.739925316050011 0.04749304 0.15266499 prediction 0.479850632100022 Functional Gain - IMPA2 ENSG00000141401 CDS Human protein_coding chr18:12030356 chr18:12030360 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_111319 0 0 0 0 1 IMPA2 chr18:12030342 3'AG 12030342 Downstream 19bp
chr5 175793504 175793504 1 + C T UCEC 175793503 + 175793483 175793523 41 GCGTGTTGTCGGGGAAGCCACCGCTGGAAGGCCACATCCCC GCGTGTTGTCGGGGAAGCCACTGCTGGAAGGCCACATCCCC < 41bp 0.527740311070178 0.767661155635457 0.281514 0.34835368 prediction 0.479841689130557 Functional Gain - ARL10 ENSG00000175414 CDS Human protein_coding chr5:175793503 chr5:175793504 nonsynonymous SNV 0.881 1 22 hm5C_associated_SNPs_111320 0 0 0 0 1 ARL10 chr5:175793584 5'GT 175793584 Upstream 81bp
chr13 100741416 100741416 1 + C A rs200714802 100741412 + 100741392 100741432 41 CGGGACAGCACCGCTGGTCGCTGCCGGACGGCGTGGGCGGT CGGGACAGCACCGCTGGTCGCTGCAGGACGGCGTGGGCGGT < 41bp 0.666941743884713 0.906858993390793 0.44012332 0.6604744 prediction 0.479834499012159 Functional Gain - PCCA ENSG00000175198 CDS Human protein_coding chr13:100741412 chr13:100741416 synonymous SNV . 0 25 hm5C_associated_SNPs_111321 0 0 1 0 1 PCCA chr13:100741479 5'GT 100741479 Upstream 64bp
chr2 132289306 132289306 1 + A G COAD 132289303 + 132289283 132289323 41 AGCTGACGTCTCCCAGAAGGCGGACCTGGAAGAGGAGCCCC AGCTGACGTCTCCCAGAAGGCGGGCCTGGAAGAGGAGCCCC < 41bp 0.52458868725293 0.764504815512324 0.30289248 0.40474597 prediction 0.479832256518788 Functional Gain - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132289303 chr2:132289306 nonsynonymous SNV 0.070 2 24 hm5C_associated_SNPs_111322 0 0 1 0 2 CCDC74A chr2:132289237 3'AG 132289237 Downstream 70bp
chr2 132289306 132289306 1 + A G COAD 132289303 + 132289283 132289323 41 AGCTGACGTCTCCCAGAAGGCGGACCTGGAAGAGGAGCCCC AGCTGACGTCTCCCAGAAGGCGGGCCTGGAAGAGGAGCCCC < 41bp 0.52458868725293 0.764504815512324 0.30289248 0.40474597 prediction 0.479832256518788 Functional Gain - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132289303 chr2:132289306 nonsynonymous SNV 0.070 2 24 hm5C_associated_SNPs_111322 0 0 1 0 2 CCDC74A chr2:132289375 5'GT 132289375 Upstream 70bp
chr12 15132130 15132130 1 + C A LUSC 15132129 + 15132109 15132149 41 ATAGATTTGGAGATGACATTCCAGGAATGGAGGGGCTAGGA ATAGATTTGGAGATGACATTCAAGGAATGGAGGGGCTAGGA < 41bp 0.545439974280287 0.785347946001298 0.83499074 0.9028479 prediction 0.479815943442022 Functional Gain - PDE6H ENSG00000139053 CDS Human protein_coding chr12:15132129 chr12:15132130 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_111326 0 0 0 0 2 PDE6H chr12:15132113 3'AG 15132113 Downstream 18bp
chr12 15132130 15132130 1 + C A LUSC 15132129 + 15132109 15132149 41 ATAGATTTGGAGATGACATTCCAGGAATGGAGGGGCTAGGA ATAGATTTGGAGATGACATTCAAGGAATGGAGGGGCTAGGA < 41bp 0.545439974280287 0.785347946001298 0.83499074 0.9028479 prediction 0.479815943442022 Functional Gain - PDE6H ENSG00000139053 CDS Human protein_coding chr12:15132129 chr12:15132130 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_111326 0 0 0 0 2 PDE6H chr12:15132153 5'GT 15132153 Upstream 24bp
chr12 85677592 85677592 1 + C T UCEC 85677591 + 85677571 85677611 41 GTCTTTCAGAAAACTCATTACCCGGATGTGTATGTCAGAGA GTCTTTCAGAAAACTCATTACTCGGATGTGTATGTCAGAGA < 41bp 0.555242373323188 0.795147943692016 0.13790372 0.1417923 prediction 0.479811140737656 Functional Gain - ALX1 ENSG00000180318 CDS Human protein_coding chr12:85677591 chr12:85677592 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_111327 0 0 1 0 1 ALX1 chr12:85677654 5'GT 85677654 Upstream 63bp
chr1 22333904 22333904 1 + C G ESCA 22333900 + 22333880 22333920 41 CCAGACAAGCTGCAGCAGGCCCGGCTGCCCGTGGTGGACTA CCAGACAAGCTGCAGCAGGCCCGGGTGCCCGTGGTGGACTA < 41bp 0.447872201737402 0.739905308390239 0.23652065 0.41336673 prediction 0.479810616780477 Functional Gain - CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333900 chr1:22333904 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_111328 0 0 0 0 1 CELA3A chr1:22333866 3'AG 22333866 Downstream 39bp
chr11 7324581 7324581 1 + C T SKCM 7324580 + 7324560 7324600 41 GAGAACTGTGCCCATGGCGTCCGCGTGCAGCGCCAAGTCAC GAGAACTGTGCCCATGGCGTCTGCGTGCAGCGCCAAGTCAC < 41bp 0.497806802996683 0.739904859850688 0.13628039 0.1234715 prediction 0.479809719701376 Functional Gain - SYT9 ENSG00000170743 CDS Human protein_coding chr11:7324580 chr11:7324581 nonsynonymous SNV 0.007 1 22 hm5C_associated_SNPs_111329 0 0 0 0 1 SYT9 chr11:7324621 5'GT 7324621 Upstream 41bp
chr8 42176801 42176801 1 + C T UCEC 42176800 + 42176780 42176820 41 CCCTGCAGGATGAATCTCCTCCGAAACAACAGCTGCCTCTC CCCTGCAGGATGAATCTCCTCTGAAACAACAGCTGCCTCTC < 41bp 0.529314127040448 0.769211355877504 0.47629964 0.30720806 prediction 0.479794457674111 Functional Gain - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42176800 chr8:42176801 stopgain 1.000 1 22 hm5C_associated_SNPs_111332 0 0 1 1 1 IKBKB chr8:42176788 3'AG 42176788 Downstream 14bp
chr1 43232997 43232997 1 + C A rs193038877 43232993 + 43232973 43233013 41 AGGCGCTGTCATGGAGGACGCCGCCGCGCCGGGGCGGACCG AGGCGCTGTCATGGAGGACGCCGCAGCGCCGGGGCGGACCG < 41bp 0.664865484180459 0.904754722301931 0.5704415 0.67416 prediction 0.479778476242944 Functional Gain - C1orf50 ENSG00000164008 CDS Human protein_coding chr1:43232993 chr1:43232997 synonymous SNV . 0 25 hm5C_associated_SNPs_111334 0 0 1 0 1 C1orf50 chr1:43233061 5'GT 43233061 Upstream 65bp
chr1 43779576 43779576 1 + C A ACC 43779575 + 43779555 43779595 41 CATCCTGGCTGCCCTTTTAACCCTGGTGTGCATCCGCAGAA CATCCTGGCTGCCCTTTTAACACTGGTGTGCATCCGCAGAA < 41bp 0.518760545250957 0.758648150758264 0.34554365 0.51776206 prediction 0.479775211014613 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43779575 chr1:43779576 synonymous SNV . 0 22 hm5C_associated_SNPs_111335 0 0 0 0 1 TIE1 chr1:43779639 5'GT 43779639 Upstream 64bp
chr16 1411761 1411761 1 + C A UCEC 1411757 + 1411737 1411777 41 CTTCCAGGACCCGTGCATCTCTTCCGACTCTCGGGCAAGTG CTTCCAGGACCCGTGCATCTCTTCAGACTCTCGGGCAAGTG < 41bp 0.309372502308327 0.739884066500593 0.09137896 0.4831116 prediction 0.479768133001186 Functional Gain - GNPTG ENSG00000090581 CDS Human protein_coding chr16:1411757 chr16:1411761 synonymous SNV . 0 25 hm5C_associated_SNPs_111336 0 0 1 0 2 GNPTG chr16:1411744 3'AG 1411744 Downstream 18bp
chr16 1411761 1411761 1 + C A UCEC 1411757 + 1411737 1411777 41 CTTCCAGGACCCGTGCATCTCTTCCGACTCTCGGGCAAGTG CTTCCAGGACCCGTGCATCTCTTCAGACTCTCGGGCAAGTG < 41bp 0.309372502308327 0.739884066500593 0.09137896 0.4831116 prediction 0.479768133001186 Functional Gain - GNPTG ENSG00000090581 CDS Human protein_coding chr16:1411757 chr16:1411761 synonymous SNV . 0 25 hm5C_associated_SNPs_111336 0 0 1 0 2 GNPTG chr16:1411798 5'GT 1411798 Upstream 38bp
chr19 17893830 17893830 1 + C A GBM 17893826 + 17893806 17893846 41 AGTCCCCTCATCCTCCCTAGCTGCCTGGCTCGAGTAACTGG AGTCCCCTCATCCTCCCTAGCTGCATGGCTCGAGTAACTGG < 41bp 0.314714801467215 0.739881015109056 0.03049925 0.15038282 prediction 0.479762030218112 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17893826 chr19:17893830 nonsynonymous SNV 0.943 0 25 hm5C_associated_SNPs_111339 0 0 0 0 1 FCHO1 chr19:17893826 3'AG 17893826 Downstream 5bp
chr1 21887702 21887702 1 + C T STAD 21887701 + 21887681 21887721 41 GTTCCCCTTCGTGGCCCTCTCCAAGGTGAGCCCCATCCCCA GTTCCCCTTCGTGGCCCTCTCTAAGGTGAGCCCCATCCCCA < 41bp 0.50398344977319 0.743857893663147 0.92604554 0.7495051 prediction 0.479748887779914 Functional Gain - ALPL ENSG00000162551 CDS Human protein_coding chr1:21887701 chr1:21887702 synonymous SNV . 0 22 hm5C_associated_SNPs_111341 0 0 0 0 2 ALPL chr1:21887631 3'AG 21887631 Downstream 72bp
chr1 21887702 21887702 1 + C T STAD 21887701 + 21887681 21887721 41 GTTCCCCTTCGTGGCCCTCTCCAAGGTGAGCCCCATCCCCA GTTCCCCTTCGTGGCCCTCTCTAAGGTGAGCCCCATCCCCA < 41bp 0.50398344977319 0.743857893663147 0.92604554 0.7495051 prediction 0.479748887779914 Functional Gain - ALPL ENSG00000162551 CDS Human protein_coding chr1:21887701 chr1:21887702 synonymous SNV . 0 22 hm5C_associated_SNPs_111341 0 0 0 0 2 ALPL chr1:21887705 5'GT 21887705 Upstream 4bp
chr1 54360014 54360014 1 + T C LUAD 54360012 + 54359992 54360032 41 GTCAAGCGGAACATCCTGGCCATGGGCGAGAAGACGGGTAT GTCAAGCGGAACATCCTGGCCACGGGCGAGAAGACGGGTAT < 41bp 0.537600632045794 0.777464305264311 0.860114 0.69356173 prediction 0.479727346437034 Functional Gain - DIO1 ENSG00000211452 CDS Human protein_coding chr1:54360012 chr1:54360014 nonsynonymous SNV 0.104 1 23 hm5C_associated_SNPs_111343 0 0 0 0 1 DIO1 chr1:54360028 5'GT 54360028 Upstream 15bp
chr12 670520 670520 1 + C A rs149363012 670516 + 670496 670536 41 TCTCCTCCTCCAGGATACTCCAAGCGGGCCTGGACGTGGAG TCTCCTCCTCCAGGATACTCCAAGAGGGCCTGGACGTGGAG < 41bp 0.348914595919814 0.739862415902037 0.91485965 0.87904775 prediction 0.479724831804074 Functional Gain - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:670516 chr12:670520 nonsynonymous SNV 0.922 3 25 hm5C_associated_SNPs_111344 0 0 0 0 1 B4GALNT3 chr12:670509 3'AG 670509 Downstream 12bp
chr12 108910962 108910962 1 + C T rs2303634 108910961 + 108910941 108910981 41 ACCGGACAGGGCGCAGCATGCCGCCACCAAGTGCACCAGCC ACCGGACAGGGCGCAGCATGCTGCCACCAAGTGCACCAGCC < 41bp 0.496783525333243 0.739861611407587 0.731341 0.6368317 prediction 0.479723222815173 Functional Gain - FICD ENSG00000198855 CDS Human protein_coding chr12:108910961 chr12:108910962 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_111345 0 0 0 0 1 FICD chr12:108911050 5'GT 108911050 Upstream 89bp
chr1 234041328 234041328 1 + C T SKCM 234041327 + 234041307 234041347 41 GGAGACTGTCCGACATCAGCCCCCAGCTCCGGCAGCTCAAG GGAGACTGTCCGACATCAGCCTCCAGCTCCGGCAGCTCAAG < 41bp 0.534407814227283 0.774263355857962 0.05389279 0.77084255 prediction 0.479711083261359 Functional Gain - SLC35F3 ENSG00000183780 CDS Human protein_coding chr1:234041327 chr1:234041328 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_111347 0 0 0 0 1 SLC35F3 chr1:234041275 3'AG 234041275 Downstream 54bp
chr15 40568177 40568177 1 + C T SKCM 40568176 + 40568156 40568196 41 AGCGGATGCTGGTGCGGGACCCCCAAGAGAGAGCCACAGCC AGCGGATGCTGGTGCGGGACCTCCAAGAGAGAGCCACAGCC < 41bp 0.570133927685214 0.809987046121978 0.1779243 0.9587488 prediction 0.479706236873529 Functional Gain - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40568176 chr15:40568177 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111348 0 0 0 0 1 BUB1B-PAK6;PAK6 chr15:40568128 3'AG 40568128 Downstream 50bp
chr7 149559525 149559525 1 + A G UCEC 149559522 + 149559502 149559542 41 CAGCACTGGTACCTGACCTCCTCAGGCCGGCGTTTCAGCCA CAGCACTGGTACCTGACCTCCTCGGGCCGGCGTTTCAGCCA < 41bp 0.500263776577698 0.740115380835112 0.6680646 0.6495784 prediction 0.479703208514828 Functional Gain - ZNF862 ENSG00000106479 CDS Human protein_coding chr7:149559522 chr7:149559525 synonymous SNV . 0 24 hm5C_associated_SNPs_111349 0 0 0 0 1 ZNF862 chr7:149559583 5'GT 149559583 Upstream 59bp
chr3 128621403 128621403 1 + T C STAD 128621401 + 128621381 128621421 41 CTGTTCTCCCTGCAGGTGGCCATGAACATCCTCAACAGCGG CTGTTCTCCCTGCAGGTGGCCACGAACATCCTCAACAGCGG < 41bp 0.579758095898293 0.819608556279652 0.08629045 0.06378248 prediction 0.479700920762718 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128621401 chr3:128621403 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_111350 0 0 1 0 3 ACAD9 chr3:128621396 3'AG 128621396 Downstream 8bp
chr3 128621403 128621403 1 + T C STAD 128621401 + 128621381 128621421 41 CTGTTCTCCCTGCAGGTGGCCATGAACATCCTCAACAGCGG CTGTTCTCCCTGCAGGTGGCCACGAACATCCTCAACAGCGG < 41bp 0.579758095898293 0.819608556279652 0.08629045 0.06378248 prediction 0.479700920762718 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128621401 chr3:128621403 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_111350 0 0 1 0 3 ACAD9 chr3:128621471 5'GT 128621471 Upstream 69bp
chr3 128621403 128621403 1 + T C STAD 128621401 + 128621381 128621421 41 CTGTTCTCCCTGCAGGTGGCCATGAACATCCTCAACAGCGG CTGTTCTCCCTGCAGGTGGCCACGAACATCCTCAACAGCGG < 41bp 0.579758095898293 0.819608556279652 0.08629045 0.06378248 prediction 0.479700920762718 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128621401 chr3:128621403 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_111350 0 0 1 0 3 ACAD9 chr3:128621475 5'GT 128621475 Upstream 73bp
chr1 4771973 4771973 1 + C T COAD 4771972 + 4771952 4771992 41 CCGCACAGCTCCATGTCCATCCGCTGGCCGGGCCGCCCCCT CCGCACAGCTCCATGTCCATCTGCTGGCCGGGCCGCCCCCT < 41bp 0.504845898530867 0.744677715209602 0.06360945 0.0633975 prediction 0.47966363335747 Functional Gain - AJAP1 ENSG00000196581 CDS Human protein_coding chr1:4771972 chr1:4771973 nonsynonymous SNV 0.995 0 22 hm5C_associated_SNPs_111352 0 0 0 0 1 AJAP1 chr1:4771960 3'AG 4771960 Downstream 14bp
chr16 68679634 68679634 1 + C G rs74619658 68679633 + 68679613 68679653 41 GGGAGGCGCGGAGCAGGAGCCCGGCCAGGCGCTGGGGAAAG GGGAGGCGCGGAGCAGGAGCCGGGCCAGGCGCTGGGGAAAG < 41bp 0.421054512437072 0.739826632691007 0.5887561 0.8615645 prediction 0.479653265382013 Functional Gain - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68679633 chr16:68679634 synonymous SNV . 0 22 hm5C_associated_SNPs_111355 0 0 0 0 2 CDH3 chr16:68679539 3'AG 68679539 Downstream 96bp
chr16 68679634 68679634 1 + C G rs74619658 68679633 + 68679613 68679653 41 GGGAGGCGCGGAGCAGGAGCCCGGCCAGGCGCTGGGGAAAG GGGAGGCGCGGAGCAGGAGCCGGGCCAGGCGCTGGGGAAAG < 41bp 0.421054512437072 0.739826632691007 0.5887561 0.8615645 prediction 0.479653265382013 Functional Gain - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68679633 chr16:68679634 synonymous SNV . 0 22 hm5C_associated_SNPs_111355 0 0 0 0 2 CDH3 chr16:68679653 5'GT 68679653 Upstream 20bp
chr3 195636766 195636766 1 + T A rs192744668 195636762 + 195636742 195636782 41 GGGCCCTACCCCGCTCTCCCCGACTCCCCCGGGCCCGGCCT GGGCCCTACCCCGCTCTCCCCGACACCCCCGGGCCCGGCCT < 41bp 0.562918038153535 0.802744651650371 0.31184787 0.3944903 prediction 0.479653226993672 Functional Gain - TNK2-AS1 ENSG00000224614 ncRNA_exonic Human antisense chr3:195636762 chr3:195636766 . . 0 25 hm5C_associated_SNPs_111356 0 0 0 0 1 TNK2-AS1 chr3:195636736 3'AG 195636736 Downstream 31bp
chr17 42978466 42978466 1 + T A BRCA 42978462 + 42978442 42978482 41 TACAAACGGGAGAATGCTGCCAAGTTACGGGCAGTGGAACA TACAAACGGGAGAATGCTGCCAAGATACGGGCAGTGGAACA < 41bp 0.629942250514443 0.869768658689021 0.25293708 0.3590744 prediction 0.479652816349157 Functional Gain - CCDC103 ENSG00000167131 CDS Human protein_coding chr17:42978462 chr17:42978466 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_111357 0 0 0 0 1 CCDC103 chr17:42978509 5'GT 42978509 Upstream 44bp
chr9 101822220 101822220 1 + C G rs4480177 101822219 + 101822199 101822239 41 TCCAGGACAGCCAGGGCTTCCCGGATCCAGAAACCTGGTCA TCCAGGACAGCCAGGGCTTCCGGGATCCAGAAACCTGGTCA < 41bp 0.6230517772391 0.862878025284535 0.3029158 0.6518818 prediction 0.47965249609087 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101822219 chr9:101822220 synonymous SNV . 0 22 hm5C_associated_SNPs_111358 0 0 0 0 2 COL15A1 chr9:101822171 3'AG 101822171 Downstream 50bp
chr9 101822220 101822220 1 + C G rs4480177 101822219 + 101822199 101822239 41 TCCAGGACAGCCAGGGCTTCCCGGATCCAGAAACCTGGTCA TCCAGGACAGCCAGGGCTTCCGGGATCCAGAAACCTGGTCA < 41bp 0.6230517772391 0.862878025284535 0.3029158 0.6518818 prediction 0.47965249609087 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101822219 chr9:101822220 synonymous SNV . 0 22 hm5C_associated_SNPs_111358 0 0 0 0 2 COL15A1 chr9:101822235 5'GT 101822235 Upstream 16bp
chr3 137742562 137742562 1 + C T LUAD 137742561 + 137742541 137742581 41 GTCCTGGGTGCCATTGGCCTCCTGGTATCCATCTTTGCCCT GTCCTGGGTGCCATTGGCCTCTTGGTATCCATCTTTGCCCT < 41bp 0.494823060347649 0.739819591804974 0.16368154 0.11038634 prediction 0.479639183609949 Functional Gain - CLDN18 ENSG00000066405 CDS Human protein_coding chr3:137742561 chr3:137742562 synonymous SNV . 0 22 hm5C_associated_SNPs_111360 0 0 0 0 1 CLDN18 chr3:137742500 3'AG 137742500 Downstream 63bp
chr8 86356285 86356285 1 + C T UCEC 86356284 + 86356264 86356304 41 TTCATTTGGTTCACTGGAACCCGAAGTATAACACTTTTAAA TTCATTTGGTTCACTGGAACCTGAAGTATAACACTTTTAAA < 41bp 0.513672957686305 0.753482280954925 0.31336665 0.11462951 prediction 0.47961864653724 Functional Gain - CA3 ENSG00000164879 CDS Human protein_coding chr8:86356284 chr8:86356285 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_111361 0 0 0 0 2 CA3 chr8:86356263 3'AG 86356263 Downstream 23bp
chr8 86356285 86356285 1 + C T UCEC 86356284 + 86356264 86356304 41 TTCATTTGGTTCACTGGAACCCGAAGTATAACACTTTTAAA TTCATTTGGTTCACTGGAACCTGAAGTATAACACTTTTAAA < 41bp 0.513672957686305 0.753482280954925 0.31336665 0.11462951 prediction 0.47961864653724 Functional Gain - CA3 ENSG00000164879 CDS Human protein_coding chr8:86356284 chr8:86356285 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_111361 0 0 0 0 2 CA3 chr8:86356355 5'GT 86356355 Upstream 71bp
chr19 36256009 36256009 1 + A G rs200193402 36256006 + 36255986 36256026 41 TTCCTCATTCCCCACCAGCTCTGATGGCCTCTCTCCCTTCT TTCCTCATTCCCCACCAGCTCTGGTGGCCTCTCTCCCTTCT < 41bp 0.543702880908126 0.783508881755238 0.21714708 0.5649653 prediction 0.479612001694224 Functional Gain - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36256006 chr19:36256009 nonsynonymous SNV 0.049 2 24 hm5C_associated_SNPs_111363 0 0 1 0 2 PROSER3 chr19:36255935 3'AG 36255935 Downstream 75bp
chr19 36256009 36256009 1 + A G rs200193402 36256006 + 36255986 36256026 41 TTCCTCATTCCCCACCAGCTCTGATGGCCTCTCTCCCTTCT TTCCTCATTCCCCACCAGCTCTGGTGGCCTCTCTCCCTTCT < 41bp 0.543702880908126 0.783508881755238 0.21714708 0.5649653 prediction 0.479612001694224 Functional Gain - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36256006 chr19:36256009 nonsynonymous SNV 0.049 2 24 hm5C_associated_SNPs_111363 0 0 1 0 2 PROSER3 chr19:36256077 5'GT 36256077 Upstream 69bp
chr2 74077640 74077640 1 + T C rs138161537 74077638 + 74077618 74077658 41 TCATCACACTGGGCTGGATTCATGTAAGCAATTCTGAGCTG TCATCACACTGGGCTGGATTCACGTAAGCAATTCTGAGCTG < 41bp 0.568870046345185 0.808675472896506 0.54655695 0.54561853 prediction 0.479610853102642 Functional Gain - STAMBP ENSG00000124356 CDS Human protein_coding chr2:74077638 chr2:74077640 synonymous SNV . 0 23 hm5C_associated_SNPs_111364 0 0 1 0 1 STAMBP chr2:74077640 5'GT 74077640 Upstream 1bp
chr6 117591781 117591781 1 + C A rs200640805 117591780 + 117591760 117591800 41 CGTACCAGGCGCCAGTGCCCCCGCCGCTGGGCAGCCCTCTG CGTACCAGGCGCCAGTGCCCCAGCCGCTGGGCAGCCCTCTG < 41bp 0.523233059617596 0.763013547461914 0.36118862 0.4414206 prediction 0.479560975688636 Functional Gain - VGLL2 ENSG00000170162 CDS Human protein_coding chr6:117591780 chr6:117591781 nonsynonymous SNV 0.894 1 22 hm5C_associated_SNPs_111367 0 0 0 0 1 VGLL2 chr6:117591706 3'AG 117591706 Downstream 76bp
chr22 17983998 17983998 1 + C G LUAD 17983994 + 17983974 17984014 41 CTTCGAGAACGGCAGCTCTACAAGCTCCTCAGTGAGGACTT CTTCGAGAACGGCAGCTCTACAAGGTCCTCAGTGAGGACTT < 41bp 0.445399869630232 0.739771133030449 0.08672848 0.21113059 prediction 0.479542266060898 Functional Gain - CECR2 ENSG00000099954 CDS Human protein_coding chr22:17983994 chr22:17983998 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_111368 0 0 1 0 1 CECR2 chr22:17984048 5'GT 17984048 Upstream 51bp
chr12 57892012 57892012 1 + T G rs569333899 57892010 + 57891990 57892030 41 ACGTCAACAATGTCCCCCACCTTGGGAACATCATTGGTTGT ACGTCAACAATGTCCCCCACCTGGGGAACATCATTGGTTGT < 41bp 0.392350085657592 0.739767027681953 0.010906011 0.13384572 prediction 0.479534055363906 Functional Gain - MARS ENSG00000166986 CDS Human protein_coding chr12:57892010 chr12:57892012 synonymous SNV . 0 23 hm5C_associated_SNPs_111369 0 0 1 0 2 MARS chr12:57891940 3'AG 57891940 Downstream 73bp
chr12 57892012 57892012 1 + T G rs569333899 57892010 + 57891990 57892030 41 ACGTCAACAATGTCCCCCACCTTGGGAACATCATTGGTTGT ACGTCAACAATGTCCCCCACCTGGGGAACATCATTGGTTGT < 41bp 0.392350085657592 0.739767027681953 0.010906011 0.13384572 prediction 0.479534055363906 Functional Gain - MARS ENSG00000166986 CDS Human protein_coding chr12:57892010 chr12:57892012 synonymous SNV . 0 23 hm5C_associated_SNPs_111369 0 0 1 0 2 MARS chr12:57892056 5'GT 57892056 Upstream 45bp
chr16 223546 223546 1 + C A HNSC 223545 + 223525 223565 41 ACCCCTGCGGTGCACGCCTCCCTGGACAAGTTCCTGGCTTC ACCCCTGCGGTGCACGCCTCCATGGACAAGTTCCTGGCTTC < 41bp 0.538441126013037 0.778202993796812 0.28678852 0.23424229 prediction 0.479523735567549 Functional Gain - HBA2 ENSG00000188536 CDS Human protein_coding chr16:223545 chr16:223546 nonsynonymous SNV 0.655 2 22 hm5C_associated_SNPs_111372 0 0 1 0 1 HBA2 chr16:223471 3'AG 223471 Downstream 76bp
chr14 94568224 94568224 1 + C G rs117094493 94568223 + 94568203 94568243 41 CTTCACCTCAGTAGGAATCGCCGCATCCTCCATAGCAGCCA CTTCACCTCAGTAGGAATCGCGGCATCCTCCATAGCAGCCA < 41bp 0.634768229716293 0.874528755222982 0.09007883 0.8970122 prediction 0.479521051013376 Functional Gain - IFI27L1 ENSG00000165948 CDS Human protein_coding chr14:94568223 chr14:94568224 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_111373 0 0 1 0 2 IFI27L1 chr14:94568160 3'AG 94568160 Downstream 65bp
chr14 94568224 94568224 1 + C G rs117094493 94568223 + 94568203 94568243 41 CTTCACCTCAGTAGGAATCGCCGCATCCTCCATAGCAGCCA CTTCACCTCAGTAGGAATCGCGGCATCCTCCATAGCAGCCA < 41bp 0.634768229716293 0.874528755222982 0.09007883 0.8970122 prediction 0.479521051013376 Functional Gain - IFI27L1 ENSG00000165948 CDS Human protein_coding chr14:94568223 chr14:94568224 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_111373 0 0 1 0 2 IFI27L1 chr14:94568321 5'GT 94568321 Upstream 98bp
chr7 90012362 90012362 1 + T C UCEC 90012360 + 90012340 90012380 41 CAGATGCCCAAGATAAGTTCCATGAATTGATGAGCCAGCTC CAGATGCCCAAGATAAGTTCCACGAATTGATGAGCCAGCTC < 41bp 0.459760809383848 0.73975196096614 0.16624245 0.1194295 prediction 0.47950392193228 Functional Gain - GTPBP10 ENSG00000105793 CDS Human protein_coding chr7:90012360 chr7:90012362 synonymous SNV . 0 23 hm5C_associated_SNPs_111375 0 0 1 0 2 GTPBP10 chr7:90012270 3'AG 90012270 Downstream 93bp
chr7 90012362 90012362 1 + T C UCEC 90012360 + 90012340 90012380 41 CAGATGCCCAAGATAAGTTCCATGAATTGATGAGCCAGCTC CAGATGCCCAAGATAAGTTCCACGAATTGATGAGCCAGCTC < 41bp 0.459760809383848 0.73975196096614 0.16624245 0.1194295 prediction 0.47950392193228 Functional Gain - GTPBP10 ENSG00000105793 CDS Human protein_coding chr7:90012360 chr7:90012362 synonymous SNV . 0 23 hm5C_associated_SNPs_111375 0 0 1 0 2 GTPBP10 chr7:90012393 5'GT 90012393 Upstream 32bp
chr11 44097105 44097105 1 + C G BLCA 44097101 + 44097081 44097121 41 TGTCCTGAATGGTGGTGCCTCGCTCTTCTCTGCTCTGGCCA TGTCCTGAATGGTGGTGCCTCGCTGTTCTCTGCTCTGGCCA < 41bp 0.448671797046987 0.739738783278739 0.39499614 0.30491626 prediction 0.479477566557479 Functional Gain - ACCS ENSG00000110455 CDS Human protein_coding chr11:44097101 chr11:44097105 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_111378 0 0 1 0 1 ACCS chr11:44097142 5'GT 44097142 Upstream 38bp
chr19 41727878 41727878 1 + C T LGG 41727877 + 41727857 41727897 41 AAGCTCAGGGACCCCCAGAGCCCGTGGACCTACTCTGGCTC AAGCTCAGGGACCCCCAGAGCTCGTGGACCTACTCTGGCTC < 41bp 0.481015935825794 0.739735143862595 0.25009727 0.42354885 prediction 0.479470287725191 Functional Gain - AXL ENSG00000167601 CDS Human protein_coding chr19:41727877 chr19:41727878 nonsynonymous SNV 0.973 5 22 hm5C_associated_SNPs_111381 0 0 0 0 2 AXL chr19:41727785 3'AG 41727785 Downstream 94bp
chr19 41727878 41727878 1 + C T LGG 41727877 + 41727857 41727897 41 AAGCTCAGGGACCCCCAGAGCCCGTGGACCTACTCTGGCTC AAGCTCAGGGACCCCCAGAGCTCGTGGACCTACTCTGGCTC < 41bp 0.481015935825794 0.739735143862595 0.25009727 0.42354885 prediction 0.479470287725191 Functional Gain - AXL ENSG00000167601 CDS Human protein_coding chr19:41727877 chr19:41727878 nonsynonymous SNV 0.973 5 22 hm5C_associated_SNPs_111381 0 0 0 0 2 AXL chr19:41727961 5'GT 41727961 Upstream 84bp
chr5 148563113 148563113 1 + C A GBM 148563109 + 148563089 148563129 41 TGCAAAGGGGAAGTGGTCCGCGTGCACAACAACCACTTCCA TGCAAAGGGGAAGTGGTCCGCGTGAACAACAACCACTTCCA < 41bp 0.332616791319712 0.739732480050655 0.27458608 0.19745803 prediction 0.479464960101309 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148563109 chr5:148563113 nonsynonymous SNV 0.976 3 25 hm5C_associated_SNPs_111382 0 0 0 0 2 ABLIM3 chr5:148563015 3'AG 148563015 Downstream 99bp
chr5 148563113 148563113 1 + C A GBM 148563109 + 148563089 148563129 41 TGCAAAGGGGAAGTGGTCCGCGTGCACAACAACCACTTCCA TGCAAAGGGGAAGTGGTCCGCGTGAACAACAACCACTTCCA < 41bp 0.332616791319712 0.739732480050655 0.27458608 0.19745803 prediction 0.479464960101309 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148563109 chr5:148563113 nonsynonymous SNV 0.976 3 25 hm5C_associated_SNPs_111382 0 0 0 0 2 ABLIM3 chr5:148563152 5'GT 148563152 Upstream 40bp
chr16 31422152 31422152 1 + C A SKCM 31422151 + 31422131 31422171 41 GGGAAGGCTGTCATCTTCACCCAGGTGTCCAGGCAATGGAG GGGAAGGCTGTCATCTTCACCAAGGTGTCCAGGCAATGGAG < 41bp 0.472102116693814 0.739732461500073 0.8112051 0.8004086 prediction 0.479464923000147 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422151 chr16:31422152 nonsynonymous SNV 0.422 0 22 hm5C_associated_SNPs_111383 0 0 0 0 2 ITGAD chr16:31422057 3'AG 31422057 Downstream 96bp
chr16 31422152 31422152 1 + C A SKCM 31422151 + 31422131 31422171 41 GGGAAGGCTGTCATCTTCACCCAGGTGTCCAGGCAATGGAG GGGAAGGCTGTCATCTTCACCAAGGTGTCCAGGCAATGGAG < 41bp 0.472102116693814 0.739732461500073 0.8112051 0.8004086 prediction 0.479464923000147 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422151 chr16:31422152 nonsynonymous SNV 0.422 0 22 hm5C_associated_SNPs_111383 0 0 0 0 2 ITGAD chr16:31422199 5'GT 31422199 Upstream 48bp
chr1 26527403 26527403 1 + T A UCEC 26527399 + 26527379 26527419 41 CCCGCTCGGAGAAATCTGGTCTCCTCCAGGAACCCCTTGCG CCCGCTCGGAGAAATCTGGTCTCCACCAGGAACCCCTTGCG < 41bp 0.389131954028396 0.739724583189959 0.18977952 0.88099873 prediction 0.479449166379918 Functional Gain - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26527399 chr1:26527403 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_111385 0 0 0 0 1 CATSPER4 chr1:26527321 3'AG 26527321 Downstream 83bp
chr1 109419841 109419841 1 + C A rs35520362 109419837 + 109419817 109419857 41 CACCGCGTACCCGGGACCCGCCCGCCCGCGGGAGGTGAGCG CACCGCGTACCCGGGACCCGCCCGACCGCGGGAGGTGAGCG < 41bp 0.38962058463858 0.739722239929977 0.3368084 0.2907265 prediction 0.479444479859953 Functional Gain - GPSM2 ENSG00000121957 UTR5 Human protein_coding chr1:109419837 chr1:109419841 . . 0 25 hm5C_associated_SNPs_111386 0 0 1 0 1 GPSM2 chr1:109419850 5'GT 109419850 Upstream 10bp
chr17 4804095 4804095 1 - G T STAD 4804096 - 4804076 4804116 41 ACTTCTCTGAGCGTGCCGCTCCTGGGCAGGTGAAGCCGGAG ACTTCTCTGAGCGTGCCGCTCATGGGCAGGTGAAGCCGGAG < 41bp 0.471107085415433 0.739721708356705 0.7401294 0.9015046 prediction 0.47944341671341 Functional Gain - CHRNE ENSG00000108556 CDS Human protein_coding chr17:4804096 chr17:4804095 nonsynonymous SNV 0.996 5 22 hm5C_associated_SNPs_111387 0 0 0 0 1 CHRNE chr17:4804088 5'GT 4804088 Upstream 8bp
chr10 114057903 114057903 1 + C T PAAD 114057902 + 114057882 114057922 41 ACCTTCCAATTCAATGCTTTCCGGTTCCAGAACATCCCCAA ACCTTCCAATTCAATGCTTTCTGGTTCCAGAACATCCCCAA < 41bp 0.51944753304718 0.759169011295251 0.4535082 0.4309975 prediction 0.479442956496141 Functional Gain - TECTB ENSG00000119913 CDS Human protein_coding chr10:114057902 chr10:114057903 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_111388 0 0 0 0 2 TECTB chr10:114057827 3'AG 114057827 Downstream 77bp
chr10 114057903 114057903 1 + C T PAAD 114057902 + 114057882 114057922 41 ACCTTCCAATTCAATGCTTTCCGGTTCCAGAACATCCCCAA ACCTTCCAATTCAATGCTTTCTGGTTCCAGAACATCCCCAA < 41bp 0.51944753304718 0.759169011295251 0.4535082 0.4309975 prediction 0.479442956496141 Functional Gain - TECTB ENSG00000119913 CDS Human protein_coding chr10:114057902 chr10:114057903 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_111388 0 0 0 0 2 TECTB chr10:114057989 5'GT 114057989 Upstream 87bp
chr5 145428665 145428665 1 + C A rs35937996 145428661 + 145428641 145428681 41 TGTAGCCCTGCACTCCTACTCAGCCCATGGACCCGATGAGC TGTAGCCCTGCACTCCTACTCAGCACATGGACCCGATGAGC < 41bp 0.33286932159822 0.739694623605442 0.29542285 0.5508192 prediction 0.479389247210883 Functional Gain - SH3RF2 ENSG00000156463 CDS Human protein_coding chr5:145428661 chr5:145428665 synonymous SNV . 0 25 hm5C_associated_SNPs_111393 0 0 0 0 1 SH3RF2 chr5:145428638 3'AG 145428638 Downstream 28bp
chr15 50475055 50475055 1 + T A rs540863847 50475051 + 50475031 50475071 41 ACAACATCCGCGCGAAGTCCCTGCTGCACTGCTTCCAGTGC ACAACATCCGCGCGAAGTCCCTGCAGCACTGCTTCCAGTGC < 41bp 0.638174559260569 0.877869068741601 0.13640901 0.2148326 prediction 0.479389018962065 Functional Gain - SLC27A2 ENSG00000140284 CDS Human protein_coding chr15:50475051 chr15:50475055 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_111394 0 0 1 0 1 SLC27A2 chr15:50475102 5'GT 50475102 Upstream 48bp
chr17 48540598 48540598 1 + A G UCEC 48540595 + 48540575 48540615 41 CCAACATTTTAGGAGAGCGCCTGAAACTGCATGAGAAGGTG CCAACATTTTAGGAGAGCGCCTGGAACTGCATGAGAAGGTG < 41bp 0.502913351337054 0.742604086244193 0.053596646 0.23991778 prediction 0.479381469814279 Functional Gain - ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48540595 chr17:48540598 nonsynonymous SNV 0.212 0 24 hm5C_associated_SNPs_111396 0 0 1 0 2 ACSF2 chr17:48540517 3'AG 48540517 Downstream 82bp
chr17 48540598 48540598 1 + A G UCEC 48540595 + 48540575 48540615 41 CCAACATTTTAGGAGAGCGCCTGAAACTGCATGAGAAGGTG CCAACATTTTAGGAGAGCGCCTGGAACTGCATGAGAAGGTG < 41bp 0.502913351337054 0.742604086244193 0.053596646 0.23991778 prediction 0.479381469814279 Functional Gain - ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48540595 chr17:48540598 nonsynonymous SNV 0.212 0 24 hm5C_associated_SNPs_111396 0 0 1 0 2 ACSF2 chr17:48540612 5'GT 48540612 Upstream 15bp
chr11 66287216 66287216 1 + C G KIRC 66287215 + 66287195 66287235 41 CGAGGCCTTCACCATTTTAGCCAAGGTCAGCGTCAGGTCTG CGAGGCCTTCACCATTTTAGCGAAGGTCAGCGTCAGGTCTG < 41bp 0.424218200903256 0.739689340488425 0.8742336 0.9105613 prediction 0.479378680976851 Functional Gain - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66287215 chr11:66287216 synonymous SNV . 0 22 hm5C_associated_SNPs_111397 0 0 1 0 1 BBS1 chr11:66287219 5'GT 66287219 Upstream 4bp
chr14 23847948 23847948 1 + C A LUAD 23847947 + 23847927 23847967 41 CCCACTCAGCAAAGGTCCAGCCCCAGCCCTGGCCTGGCTTG CCCACTCAGCAAAGGTCCAGCACCAGCCCTGGCCTGGCTTG < 41bp 0.542253359676016 0.781940076238645 0.06132841 0.09568086 prediction 0.479373433125257 Functional Gain - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23847947 chr14:23847948 nonsynonymous SNV 0.004 2 22 hm5C_associated_SNPs_111398 0 0 0 0 1 CMTM5 chr14:23847878 3'AG 23847878 Downstream 71bp
chr5 141305053 141305053 1 + C T UCEC 141305052 + 141305032 141305072 41 TGCCTTCCAATGGATGTCTTCCCGTGTCTCCCCGAACACCC TGCCTTCCAATGGATGTCTTCTCGTGTCTCCCCGAACACCC < 41bp 0.542767859067162 0.782451514437359 0.23485437 0.20665675 prediction 0.479367310740396 Functional Gain - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141305052 chr5:141305053 synonymous SNV . 0 22 hm5C_associated_SNPs_111399 0 0 1 0 2 KIAA0141 chr5:141304975 3'AG 141304975 Downstream 79bp
chr5 141305053 141305053 1 + C T UCEC 141305052 + 141305032 141305072 41 TGCCTTCCAATGGATGTCTTCCCGTGTCTCCCCGAACACCC TGCCTTCCAATGGATGTCTTCTCGTGTCTCCCCGAACACCC < 41bp 0.542767859067162 0.782451514437359 0.23485437 0.20665675 prediction 0.479367310740396 Functional Gain - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141305052 chr5:141305053 synonymous SNV . 0 22 hm5C_associated_SNPs_111399 0 0 1 0 2 KIAA0141 chr5:141305092 5'GT 141305092 Upstream 40bp
chr11 118960443 118960443 1 + C T SKCM 118960442 + 118960422 118960462 41 ACCTGCCCACTGTGCTTCCTCCTGGCTTCACCATCGGAGCC ACCTGCCCACTGTGCTTCCTCTTGGCTTCACCATCGGAGCC < 41bp 0.532773377683298 0.77245487519014 0.34434375 0.1313009 prediction 0.479362995013685 Functional Gain - HMBS ENSG00000256269 CDS Human protein_coding chr11:118960442 chr11:118960443 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_111400 0 0 1 0 1 HMBS chr11:118960470 5'GT 118960470 Upstream 28bp
chrX 44923000 44923000 1 + C T LAML 44922999 + 44922979 44923019 41 GCACTCACTCTACCTCATAACCGCACAAACCTGACCAGCAG GCACTCACTCTACCTCATAACTGCACAAACCTGACCAGCAG < 41bp 0.492773869855179 0.73968069607412 0.15211785 0.16836897 prediction 0.47936139214824 Functional Gain - KDM6A ENSG00000147050 CDS Human protein_coding chrX:44922999 chrX:44923000 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_111402 0 0 1 0 1 KDM6A chrX:44923062 5'GT 44923062 Upstream 63bp
chr3 37560809 37560809 1 + T C STAD 37560807 + 37560787 37560827 41 CAGGGGCGGTCTATATCTATCATGGTGATGCCGGTGGGATA CAGGGGCGGTCTATATCTATCACGGTGATGCCGGTGGGATA < 41bp 0.468407507001246 0.739675750178727 0.86851656 0.79553103 prediction 0.479351500357453 Functional Gain - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37560807 chr3:37560809 synonymous SNV . 0 23 hm5C_associated_SNPs_111403 0 0 0 0 2 ITGA9 chr3:37560751 3'AG 37560751 Downstream 59bp
chr3 37560809 37560809 1 + T C STAD 37560807 + 37560787 37560827 41 CAGGGGCGGTCTATATCTATCATGGTGATGCCGGTGGGATA CAGGGGCGGTCTATATCTATCACGGTGATGCCGGTGGGATA < 41bp 0.468407507001246 0.739675750178727 0.86851656 0.79553103 prediction 0.479351500357453 Functional Gain - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37560807 chr3:37560809 synonymous SNV . 0 23 hm5C_associated_SNPs_111403 0 0 0 0 2 ITGA9 chr3:37560845 5'GT 37560845 Upstream 37bp
chr16 55361589 55361589 1 + C T CESC 55361588 + 55361568 55361608 41 AAGGCCTGGCTCAACGAGCACCGCAAAAACCCCTACCCCAC AAGGCCTGGCTCAACGAGCACTGCAAAAACCCCTACCCCAC < 41bp 0.566296192817008 0.805970605028361 0.4021262 0.4436175 prediction 0.479348824422705 Functional Gain - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55361588 chr16:55361589 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_111405 0 0 0 1 1 IRX6 chr16:55361498 3'AG 55361498 Downstream 92bp
chr8 80549096 80549096 1 + C T UCEC 80549095 + 80549075 80549115 41 CTGATCTGCTCTTGCTTTTACCCGGAACCTCGCAACATCAA CTGATCTGCTCTTGCTTTTACTCGGAACCTCGCAACATCAA < 41bp 0.488088764038031 0.739674069161032 0.19372791 0.084194064 prediction 0.479348138322063 Functional Gain - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80549095 chr8:80549096 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_111406 0 0 0 1 2 STMN2 chr8:80549037 3'AG 80549037 Downstream 60bp
chr8 80549096 80549096 1 + C T UCEC 80549095 + 80549075 80549115 41 CTGATCTGCTCTTGCTTTTACCCGGAACCTCGCAACATCAA CTGATCTGCTCTTGCTTTTACTCGGAACCTCGCAACATCAA < 41bp 0.488088764038031 0.739674069161032 0.19372791 0.084194064 prediction 0.479348138322063 Functional Gain - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80549095 chr8:80549096 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_111406 0 0 0 1 2 STMN2 chr8:80549132 5'GT 80549132 Upstream 37bp
chr11 251895 251895 1 + C T SKCM 251894 + 251874 251914 41 GACGAGGTGGACAAACGAGTCCACATGACCTGGGTGCAGCC GACGAGGTGGACAAACGAGTCTACATGACCTGGGTGCAGCC < 41bp 0.55919649083178 0.798870290614298 0.19782552 0.867524 prediction 0.479347599565038 Functional Gain - PSMD13 ENSG00000185627 CDS Human protein_coding chr11:251894 chr11:251895 nonsynonymous SNV 0.861 2 22 hm5C_associated_SNPs_111407 0 0 1 0 2 PSMD13 chr11:251820 3'AG 251820 Downstream 76bp
chr11 251895 251895 1 + C T SKCM 251894 + 251874 251914 41 GACGAGGTGGACAAACGAGTCCACATGACCTGGGTGCAGCC GACGAGGTGGACAAACGAGTCTACATGACCTGGGTGCAGCC < 41bp 0.55919649083178 0.798870290614298 0.19782552 0.867524 prediction 0.479347599565038 Functional Gain - PSMD13 ENSG00000185627 CDS Human protein_coding chr11:251894 chr11:251895 nonsynonymous SNV 0.861 2 22 hm5C_associated_SNPs_111407 0 0 1 0 2 PSMD13 chr11:251936 5'GT 251936 Upstream 42bp
chr11 65745103 65745103 1 + T C GBM 65745101 + 65745081 65745121 41 AACAAGTCGCTGCCCTCAGCCGTGTACTGCATCGAGGATAA AACAAGTCGCTGCCCTCAGCCGCGTACTGCATCGAGGATAA < 41bp 0.475833062329988 0.739670163387191 0.14052898 0.17840987 prediction 0.479340326774382 Functional Gain - SART1 ENSG00000175467 CDS Human protein_coding chr11:65745101 chr11:65745103 nonsynonymous SNV 0.967 0 23 hm5C_associated_SNPs_111408 0 0 1 0 2 SART1 chr11:65745034 3'AG 65745034 Downstream 70bp
chr11 65745103 65745103 1 + T C GBM 65745101 + 65745081 65745121 41 AACAAGTCGCTGCCCTCAGCCGTGTACTGCATCGAGGATAA AACAAGTCGCTGCCCTCAGCCGCGTACTGCATCGAGGATAA < 41bp 0.475833062329988 0.739670163387191 0.14052898 0.17840987 prediction 0.479340326774382 Functional Gain - SART1 ENSG00000175467 CDS Human protein_coding chr11:65745101 chr11:65745103 nonsynonymous SNV 0.967 0 23 hm5C_associated_SNPs_111408 0 0 1 0 2 SART1 chr11:65745124 5'GT 65745124 Upstream 22bp
chr2 69015058 69015058 1 + C T SKCM 69015057 + 69015037 69015077 41 ATGGAGGAGTGGGTTAAATTCCTCAGGAGAGTTGCTGGCAC ATGGAGGAGTGGGTTAAATTCTTCAGGAGAGTTGCTGGCAC < 41bp 0.562997547259749 0.802661989006649 0.37651807 0.581146 prediction 0.479328883493801 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69015057 chr2:69015058 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_111409 0 0 0 0 2 ARHGAP25 chr2:69014972 3'AG 69014972 Downstream 87bp
chr2 69015058 69015058 1 + C T SKCM 69015057 + 69015037 69015077 41 ATGGAGGAGTGGGTTAAATTCCTCAGGAGAGTTGCTGGCAC ATGGAGGAGTGGGTTAAATTCTTCAGGAGAGTTGCTGGCAC < 41bp 0.562997547259749 0.802661989006649 0.37651807 0.581146 prediction 0.479328883493801 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69015057 chr2:69015058 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_111409 0 0 0 0 2 ARHGAP25 chr2:69015088 5'GT 69015088 Upstream 31bp
chr11 5011017 5011017 1 + C A LUSC 5011016 + 5010996 5011036 41 TGCATGCTCTGCTACACCAGCCCCACTGTGGGGTGCCTGAT TGCATGCTCTGCTACACCAGCACCACTGTGGGGTGCCTGAT < 41bp 0.4776074210487 0.739664205596287 0.01347667 0.035561115 prediction 0.479328411192574 Functional Gain - MMP26 ENSG00000167346 CDS Human protein_coding chr11:5011016 chr11:5011017 nonsynonymous SNV 0.006 1 22 hm5C_associated_SNPs_111410 0 0 0 0 1 MMP26 chr11:5011098 5'GT 5011098 Upstream 82bp
chr6 43269384 43269384 1 + C T UCEC 43269383 + 43269363 43269403 41 CCTTCATACCTAGACCTGTTCCGCACACCACGGCTCCGACA CCTTCATACCTAGACCTGTTCTGCACACCACGGCTCCGACA < 41bp 0.557538675250797 0.797195843922734 0.1299294 0.034250766 prediction 0.479314337343873 Functional Gain - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43269383 chr6:43269384 nonsynonymous SNV 0.849 4 22 hm5C_associated_SNPs_111412 0 0 0 0 2 SLC22A7 chr6:43269321 3'AG 43269321 Downstream 64bp
chr6 43269384 43269384 1 + C T UCEC 43269383 + 43269363 43269403 41 CCTTCATACCTAGACCTGTTCCGCACACCACGGCTCCGACA CCTTCATACCTAGACCTGTTCTGCACACCACGGCTCCGACA < 41bp 0.557538675250797 0.797195843922734 0.1299294 0.034250766 prediction 0.479314337343873 Functional Gain - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43269383 chr6:43269384 nonsynonymous SNV 0.849 4 22 hm5C_associated_SNPs_111412 0 0 0 0 2 SLC22A7 chr6:43269430 5'GT 43269430 Upstream 47bp
chr12 6495275 6495275 1 + C A rs2364480 6495274 + 6495254 6495294 41 CCACTGCGTCCCCTGCAAGGCCGGGCACTTCCAGAATACCT CCACTGCGTCCCCTGCAAGGCAGGGCACTTCCAGAATACCT < 41bp 0.475640364099157 0.739647239100756 0.08692554 0.22378492 prediction 0.479294478201512 Functional Gain - LTBR ENSG00000111321 CDS Human protein_coding chr12:6495274 chr12:6495275 synonymous SNV . 0 22 hm5C_associated_SNPs_111415 0 0 1 0 2 LTBR chr12:6495232 3'AG 6495232 Downstream 44bp
chr12 6495275 6495275 1 + C A rs2364480 6495274 + 6495254 6495294 41 CCACTGCGTCCCCTGCAAGGCCGGGCACTTCCAGAATACCT CCACTGCGTCCCCTGCAAGGCAGGGCACTTCCAGAATACCT < 41bp 0.475640364099157 0.739647239100756 0.08692554 0.22378492 prediction 0.479294478201512 Functional Gain - LTBR ENSG00000111321 CDS Human protein_coding chr12:6495274 chr12:6495275 synonymous SNV . 0 22 hm5C_associated_SNPs_111415 0 0 1 0 2 LTBR chr12:6495328 5'GT 6495328 Upstream 54bp
chr6 35253954 35253954 1 + C A rs142852591 35253953 + 35253933 35253973 41 CCAGCTCGAGGATGGGACCACCGCATACATTCACCAGGTGA CCAGCTCGAGGATGGGACCACAGCATACATTCACCAGGTGA < 41bp 0.480083116184015 0.739640597879008 0.54358643 0.7180829 prediction 0.479281195758015 Functional Gain - ZNF76 ENSG00000065029 CDS Human protein_coding chr6:35253953 chr6:35253954 synonymous SNV . 0 22 hm5C_associated_SNPs_111416 0 0 1 0 2 ZNF76 chr6:35253905 3'AG 35253905 Downstream 50bp
chr6 35253954 35253954 1 + C A rs142852591 35253953 + 35253933 35253973 41 CCAGCTCGAGGATGGGACCACCGCATACATTCACCAGGTGA CCAGCTCGAGGATGGGACCACAGCATACATTCACCAGGTGA < 41bp 0.480083116184015 0.739640597879008 0.54358643 0.7180829 prediction 0.479281195758015 Functional Gain - ZNF76 ENSG00000065029 CDS Human protein_coding chr6:35253953 chr6:35253954 synonymous SNV . 0 22 hm5C_associated_SNPs_111416 0 0 1 0 2 ZNF76 chr6:35253985 5'GT 35253985 Upstream 32bp
chr21 42694963 42694963 1 + C G rs528828387 42694962 + 42694942 42694982 41 TCCAGTGCTGCCTATAGCATCCGCAGCATCGGGGAGAGGCC TCCAGTGCTGCCTATAGCATCGGCAGCATCGGGGAGAGGCC < 41bp 0.620595028166398 0.86023286647758 0.0858174 0.4524321 prediction 0.479275676622364 Functional Gain - FAM3B ENSG00000183844 CDS Human protein_coding chr21:42694962 chr21:42694963 nonsynonymous SNV 0.013 0 22 hm5C_associated_SNPs_111417 0 0 1 0 1 FAM3B chr21:42694993 5'GT 42694993 Upstream 31bp
chr20 49196284 49196284 1 + C A rs2230604 49196283 + 49196263 49196303 41 CGAGGACCTGGAGCCCCCACCCGAGCATATCCCCCCACCTC CGAGGACCTGGAGCCCCCACCAGAGCATATCCCCCCACCTC < 41bp 0.4724883755049 0.739634218873068 0.3803151 0.87656534 prediction 0.479268437746136 Functional Gain - PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49196283 chr20:49196284 synonymous SNV . 0 22 hm5C_associated_SNPs_111418 0 0 1 0 1 PTPN1 chr20:49196240 3'AG 49196240 Downstream 45bp
chr10 12129553 12129553 1 + C G OV 12129549 + 12129529 12129569 41 TGCAGGAGTTTGACCACTTTCTGGCCACCAAGTTCTCGACA TGCAGGAGTTTGACCACTTTCTGGGCACCAAGTTCTCGACA < 41bp 0.617782146199601 0.857413395377807 0.20221439 0.52480453 prediction 0.479262498356411 Functional Gain - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12129549 chr10:12129553 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_111419 0 0 0 0 1 DHTKD1 chr10:12129534 3'AG 12129534 Downstream 20bp
chr17 5037254 5037254 1 + C A rs148208805 5037253 + 5037233 5037273 41 CTGGACGTGAGGACGACTCTCCGGAACCATGTCTTCTTTAG CTGGACGTGAGGACGACTCTCAGGAACCATGTCTTCTTTAG < 41bp 0.556636341831127 0.796266378614776 0.22903043 0.78470254 prediction 0.479260073567298 Functional Gain - USP6 ENSG00000129204 CDS Human protein_coding chr17:5037253 chr17:5037254 synonymous SNV . 0 22 hm5C_associated_SNPs_111420 0 0 0 0 2 USP6 chr17:5037182 3'AG 5037182 Downstream 73bp
chr17 5037254 5037254 1 + C A rs148208805 5037253 + 5037233 5037273 41 CTGGACGTGAGGACGACTCTCCGGAACCATGTCTTCTTTAG CTGGACGTGAGGACGACTCTCAGGAACCATGTCTTCTTTAG < 41bp 0.556636341831127 0.796266378614776 0.22903043 0.78470254 prediction 0.479260073567298 Functional Gain - USP6 ENSG00000129204 CDS Human protein_coding chr17:5037253 chr17:5037254 synonymous SNV . 0 22 hm5C_associated_SNPs_111420 0 0 0 0 2 USP6 chr17:5037291 5'GT 5037291 Upstream 38bp
chr21 47544624 47544624 1 + C A LUSC 47544623 + 47544603 47544643 41 GCCAAGAGGAGTCCCAGGACCCGAGGTAGGTTGGTGGCCAG GCCAAGAGGAGTCCCAGGACCAGAGGTAGGTTGGTGGCCAG < 41bp 0.547740606357017 0.787363368127038 0.78726524 0.8951339 prediction 0.479245523540042 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47544623 chr21:47544624 synonymous SNV . 0 22 hm5C_associated_SNPs_111423 0 0 0 0 2 COL6A2 chr21:47544565 3'AG 47544565 Downstream 60bp
chr21 47544624 47544624 1 + C A LUSC 47544623 + 47544603 47544643 41 GCCAAGAGGAGTCCCAGGACCCGAGGTAGGTTGGTGGCCAG GCCAAGAGGAGTCCCAGGACCAGAGGTAGGTTGGTGGCCAG < 41bp 0.547740606357017 0.787363368127038 0.78726524 0.8951339 prediction 0.479245523540042 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47544623 chr21:47544624 synonymous SNV . 0 22 hm5C_associated_SNPs_111423 0 0 0 0 2 COL6A2 chr21:47544627 5'GT 47544627 Upstream 4bp
chr16 10850599 10850599 1 + C A STAD 10850598 + 10850578 10850618 41 TGGGCTTCCTGCTCAGCAGTCCTGATGATGCTGTTATCTGG TGGGCTTCCTGCTCAGCAGTCATGATGATGCTGTTATCTGG < 41bp 0.477639218848957 0.739619206225143 0.20318401 0.18429023 prediction 0.479238412450286 Functional Gain - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10850598 chr16:10850599 nonsynonymous SNV 0.947 3 22 hm5C_associated_SNPs_111426 0 0 0 0 2 NUBP1 chr16:10850547 3'AG 10850547 Downstream 53bp
chr16 10850599 10850599 1 + C A STAD 10850598 + 10850578 10850618 41 TGGGCTTCCTGCTCAGCAGTCCTGATGATGCTGTTATCTGG TGGGCTTCCTGCTCAGCAGTCATGATGATGCTGTTATCTGG < 41bp 0.477639218848957 0.739619206225143 0.20318401 0.18429023 prediction 0.479238412450286 Functional Gain - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10850598 chr16:10850599 nonsynonymous SNV 0.947 3 22 hm5C_associated_SNPs_111426 0 0 0 0 2 NUBP1 chr16:10850637 5'GT 10850637 Upstream 39bp
chr6 167584201 167584201 1 + C A rs9366097 167584197 + 167584177 167584217 41 TCTGGTCCCAGCAGAAGTGACTGGCGGGGACCAGGTGAGGT TCTGGTCCCAGCAGAAGTGACTGGAGGGGACCAGGTGAGGT < 41bp 0.526376639479022 0.765977532181037 0.3292217 0.72777355 prediction 0.479201785404029 Functional Gain - TCP10L2 ENSG00000166984 UTR5 Human protein_coding chr6:167584197 chr6:167584201 . . 0 25 hm5C_associated_SNPs_111429 0 0 0 0 1 TCP10L2 chr6:167584210 5'GT 167584210 Upstream 10bp
chr10 134895377 134895377 1 + C G rs543198401 134895376 + 134895356 134895396 41 CCAGGGCTCCCTCGGCAGCACCGGGCGCTACAACCAGACCC CCAGGGCTCCCTCGGCAGCACGGGGCGCTACAACCAGACCC < 41bp 0.617031491023939 0.85662979555928 0.32091075 0.76393306 prediction 0.479196609070682 Functional Gain - LINC01168;ADGRA1-AS1 ENSG00000197177 CDS Human protein_coding chr10:134895376 chr10:134895377 synonymous SNV . 0 22 hm5C_associated_SNPs_111430 0 0 0 0 1 LINC01168;ADGRA1-AS1 chr10:134895462 5'GT 134895462 Upstream 86bp
chr19 10217248 10217248 1 + C G rs11559190 10217244 + 10217224 10217264 41 CGAGGCCTATGCCGCGAACCCGCACTCGTTCGTGTTCACGC CGAGGCCTATGCCGCGAACCCGCAGTCGTTCGTGTTCACGC < 41bp 0.591109590377913 0.830705992132834 0.17713547 0.36842072 prediction 0.479192803509842 Functional Gain - PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10217244 chr19:10217248 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_111432 0 0 1 0 2 PPAN;PPAN-P2RY11 chr19:10217177 3'AG 10217177 Downstream 72bp
chr19 10217248 10217248 1 + C G rs11559190 10217244 + 10217224 10217264 41 CGAGGCCTATGCCGCGAACCCGCACTCGTTCGTGTTCACGC CGAGGCCTATGCCGCGAACCCGCAGTCGTTCGTGTTCACGC < 41bp 0.591109590377913 0.830705992132834 0.17713547 0.36842072 prediction 0.479192803509842 Functional Gain - PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10217244 chr19:10217248 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_111432 0 0 1 0 2 PPAN;PPAN-P2RY11 chr19:10217347 5'GT 10217347 Upstream 100bp
chr6 39033490 39033490 1 + C T UCEC 39033489 + 39033469 39033509 41 CAGGTCTCCCCACCCCAGTGCCGCAGGGCCACGTGTACCGG CAGGTCTCCCCACCCCAGTGCTGCAGGGCCACGTGTACCGG < 41bp 0.484917878433855 0.739594687446502 0.08232829 0.15823999 prediction 0.479189374893003 Functional Gain - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39033489 chr6:39033490 nonsynonymous SNV 0.983 0 22 hm5C_associated_SNPs_111433 0 0 0 0 1 GLP1R chr6:39033487 3'AG 39033487 Downstream 4bp
chr16 28846988 28846988 1 + C A UCEC 28846987 + 28846967 28847007 41 CGGGACCTTCTGCCCAGTCCCCTCAGAGCAGCTTCCCCCAG CGGGACCTTCTGCCCAGTCCCATCAGAGCAGCTTCCCCCAG < 41bp 0.506470367720749 0.746062286824532 0.20822456 0.37687543 prediction 0.479183838207567 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28846987 chr16:28846988 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111434 0 0 1 0 1 ATXN2L chr16:28847079 5'GT 28847079 Upstream 92bp
chr1 2334561 2334561 1 + T A LUAD 2334557 + 2334537 2334577 41 GATGCCGGCAAGGCCTTCGCCAGCTAGAAGCGGGACTGAGG GATGCCGGCAAGGCCTTCGCCAGCAAGAAGCGGGACTGAGG < 41bp 0.636559584156831 0.876150402702224 0.34683558 0.13321564 prediction 0.479181637090786 Functional Gain - RER1 ENSG00000157916 CDS Human protein_coding chr1:2334557 chr1:2334561 stoploss 0.038 0 25 hm5C_associated_SNPs_111436 0 0 1 0 1 RER1 chr1:2334474 3'AG 2334474 Downstream 88bp
chr20 44642368 44642368 1 + C T STAD 44642367 + 44642347 44642387 41 CCTTATCGCCGACAAGTGGCCCGCGCTGCCCCGCAAGCTGG CCTTATCGCCGACAAGTGGCCTGCGCTGCCCCGCAAGCTGG < 41bp 0.502523688639987 0.742107875753735 0.045177937 0.029599458 prediction 0.479168374227497 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44642367 chr20:44642368 synonymous SNV . 0 22 hm5C_associated_SNPs_111439 0 0 0 0 2 MMP9 chr20:44642296 3'AG 44642296 Downstream 73bp
chr20 44642368 44642368 1 + C T STAD 44642367 + 44642347 44642387 41 CCTTATCGCCGACAAGTGGCCCGCGCTGCCCCGCAAGCTGG CCTTATCGCCGACAAGTGGCCTGCGCTGCCCCGCAAGCTGG < 41bp 0.502523688639987 0.742107875753735 0.045177937 0.029599458 prediction 0.479168374227497 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44642367 chr20:44642368 synonymous SNV . 0 22 hm5C_associated_SNPs_111439 0 0 0 0 2 MMP9 chr20:44642435 5'GT 44642435 Upstream 68bp
chr13 111371582 111371582 1 + T C UCEC 111371580 + 111371560 111371600 41 TCCTTCTTGCCCCCAGAGATCCTGAAGGAGCTAGACGAGTG TCCTTCTTGCCCCCAGAGATCCCGAAGGAGCTAGACGAGTG < 41bp 0.475558520034234 0.739576792515994 0.1889275 0.23419759 prediction 0.479153585031988 Functional Gain - ING1 ENSG00000153487 CDS Human protein_coding chr13:111371580 chr13:111371582 nonsynonymous SNV 0.747 4 23 hm5C_associated_SNPs_111441 0 0 1 0 1 ING1 chr13:111371576 3'AG 111371576 Downstream 7bp
chr1 151140731 151140731 1 + C T COAD 151140730 + 151140710 151140750 41 ACCTGCGGCTGGCCCACAGGCCGAGGAGTCAGCAACTGTCT ACCTGCGGCTGGCCCACAGGCTGAGGAGTCAGCAACTGTCT < 41bp 0.511421517808572 0.750998167487998 0.20445803 0.18382007 prediction 0.479153299358851 Functional Gain - SCNM1;TNFAIP8L2-SCNM1 ENSG00000163156 CDS Human protein_coding chr1:151140730 chr1:151140731 synonymous SNV . 0 22 hm5C_associated_SNPs_111442 0 0 1 0 2 SCNM1;TNFAIP8L2-SCNM1 chr1:151140670 3'AG 151140670 Downstream 62bp
chr1 151140731 151140731 1 + C T COAD 151140730 + 151140710 151140750 41 ACCTGCGGCTGGCCCACAGGCCGAGGAGTCAGCAACTGTCT ACCTGCGGCTGGCCCACAGGCTGAGGAGTCAGCAACTGTCT < 41bp 0.511421517808572 0.750998167487998 0.20445803 0.18382007 prediction 0.479153299358851 Functional Gain - SCNM1;TNFAIP8L2-SCNM1 ENSG00000163156 CDS Human protein_coding chr1:151140730 chr1:151140731 synonymous SNV . 0 22 hm5C_associated_SNPs_111442 0 0 1 0 2 SCNM1;TNFAIP8L2-SCNM1 chr1:151140814 5'GT 151140814 Upstream 84bp
chr9 132569553 132569553 1 + C A rs1043178 132569552 + 132569532 132569572 41 CGAGATGGATAAATTGCACCCCGGGATCATTGACGCAATCA CGAGATGGATAAATTGCACCCAGGGATCATTGACGCAATCA < 41bp 0.550929355558183 0.790501506748007 0.40046743 0.9044985 prediction 0.479144302379648 Functional Gain - TOR1B ENSG00000136816 CDS Human protein_coding chr9:132569552 chr9:132569553 synonymous SNV . 0 22 hm5C_associated_SNPs_111444 0 0 1 0 2 TOR1B chr9:132569467 3'AG 132569467 Downstream 87bp
chr9 132569553 132569553 1 + C A rs1043178 132569552 + 132569532 132569572 41 CGAGATGGATAAATTGCACCCCGGGATCATTGACGCAATCA CGAGATGGATAAATTGCACCCAGGGATCATTGACGCAATCA < 41bp 0.550929355558183 0.790501506748007 0.40046743 0.9044985 prediction 0.479144302379648 Functional Gain - TOR1B ENSG00000136816 CDS Human protein_coding chr9:132569552 chr9:132569553 synonymous SNV . 0 22 hm5C_associated_SNPs_111444 0 0 1 0 2 TOR1B chr9:132569642 5'GT 132569642 Upstream 90bp
chr2 166170174 166170174 1 + C T OV 166170173 + 166170153 166170193 41 GTGTGAAGGCTGGTAGAAACCCCAACTATGGCTACACGAGC GTGTGAAGGCTGGTAGAAACCTCAACTATGGCTACACGAGC < 41bp 0.52354750510132 0.763117848786699 0.07865852 0.1930975 prediction 0.479140687370758 Functional Gain - SCN2A ENSG00000136531 CDS Human protein_coding chr2:166170173 chr2:166170174 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111447 0 0 0 0 2 SCN2A chr2:166170130 3'AG 166170130 Downstream 45bp
chr2 166170174 166170174 1 + C T OV 166170173 + 166170153 166170193 41 GTGTGAAGGCTGGTAGAAACCCCAACTATGGCTACACGAGC GTGTGAAGGCTGGTAGAAACCTCAACTATGGCTACACGAGC < 41bp 0.52354750510132 0.763117848786699 0.07865852 0.1930975 prediction 0.479140687370758 Functional Gain - SCN2A ENSG00000136531 CDS Human protein_coding chr2:166170173 chr2:166170174 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111447 0 0 0 0 2 SCN2A chr2:166170271 5'GT 166170271 Upstream 98bp
chr11 124745978 124745978 1 + C A rs558695027 124745974 + 124745954 124745994 41 AACCCTGGTCGCGGCGGCCACCAGCGCAGGCGTGGGCGTGC AACCCTGGTCGCGGCGGCCACCAGAGCAGGCGTGGGCGTGC < 41bp 0.341156145687982 0.739569882235659 0.90553844 0.9235443 prediction 0.479139764471317 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124745974 chr11:124745978 nonsynonymous SNV 0.945 0 25 hm5C_associated_SNPs_111448 0 0 0 0 1 ROBO3 chr11:124746021 5'GT 124746021 Upstream 44bp
chr1 179638517 179638517 1 + C T SKCM 179638516 + 179638496 179638536 41 AACAACTGCAGTGGATGATTCCGCAGAAAAGCCCTCTGGTT AACAACTGCAGTGGATGATTCTGCAGAAAAGCCCTCTGGTT < 41bp 0.507884039224351 0.74745153493275 0.45647365 0.30803326 prediction 0.479134991416799 Functional Gain - TDRD5 ENSG00000162782 CDS Human protein_coding chr1:179638516 chr1:179638517 synonymous SNV . 0 22 hm5C_associated_SNPs_111449 0 0 0 0 1 TDRD5 chr1:179638539 5'GT 179638539 Upstream 23bp
chr20 3562803 3562803 1 + T G UCEC 3562801 + 3562781 3562821 41 GTCCAAGCTCACCTTAACCCCATGGGTCGGCCTTCGGAAGA GTCCAAGCTCACCTTAACCCCAGGGGTCGGCCTTCGGAAGA < 41bp 0.390047418049968 0.739560073563282 0.53928685 0.9285251 prediction 0.479120147126563 Functional Gain - ATRN ENSG00000088812 CDS Human protein_coding chr20:3562801 chr20:3562803 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_111451 0 0 1 0 1 ATRN chr20:3562782 3'AG 3562782 Downstream 22bp
chr11 57946939 57946939 1 + T C LUSC 57946937 + 57946917 57946957 41 ATGGCAGAGATGAACCTCACCTTGGTGACCGAGTTCCTCCT ATGGCAGAGATGAACCTCACCTCGGTGACCGAGTTCCTCCT < 41bp 0.554461560646527 0.794018228061914 0.06125343 0.10644823 prediction 0.479113334830774 Functional Gain - OR9Q1 ENSG00000186509 CDS Human protein_coding chr11:57946937 chr11:57946939 nonsynonymous SNV 0.467 0 23 hm5C_associated_SNPs_111452 0 0 0 0 1 OR9Q1 chr11:57946903 3'AG 57946903 Downstream 37bp
chr17 34431975 34431975 1 + C A rs200124119 34431971 + 34431951 34431991 41 TTTCTTACACTGCGAGGAAGCTTCCTCGCAACTTTGTGGTA TTTCTTACACTGCGAGGAAGCTTCATCGCAACTTTGTGGTA < 41bp 0.320491489280668 0.739553353148683 0.034058988 0.064053476 prediction 0.479106706297366 Functional Gain - CCL4 ENSG00000129277 CDS Human other chr17:34431971 chr17:34431975 nonsynonymous SNV 0.025 0 25 hm5C_associated_SNPs_111454 0 0 0 0 2 CCL4 chr17:34431921 3'AG 34431921 Downstream 55bp
chr17 34431975 34431975 1 + C A rs200124119 34431971 + 34431951 34431991 41 TTTCTTACACTGCGAGGAAGCTTCCTCGCAACTTTGTGGTA TTTCTTACACTGCGAGGAAGCTTCATCGCAACTTTGTGGTA < 41bp 0.320491489280668 0.739553353148683 0.034058988 0.064053476 prediction 0.479106706297366 Functional Gain - CCL4 ENSG00000129277 CDS Human other chr17:34431971 chr17:34431975 nonsynonymous SNV 0.025 0 25 hm5C_associated_SNPs_111454 0 0 0 0 2 CCL4 chr17:34432035 5'GT 34432035 Upstream 61bp
chr19 45452002 45452002 1 + C G LUAD 45452001 + 45451981 45452021 41 CAGCAAGATGAGATGCCTAGCCCGACCTTCCTCACCCAGGT CAGCAAGATGAGATGCCTAGCGCGACCTTCCTCACCCAGGT < 41bp 0.630405063880632 0.869955959921919 0.22940487 0.43763086 prediction 0.479101792082575 Functional Gain - APOC2 ENSG00000224916;ENSG00000234906 CDS Human other chr19:45452001 chr19:45452002 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_111455 0 0 1 0 1 APOC2 chr19:45451958 3'AG 45451958 Downstream 45bp
chr15 45444181 45444181 1 + C A UCEC 45444177 + 45444157 45444197 41 TTCAAGCGCTTCATTGAGAACTACCGGCGCCACATCGGCTG TTCAAGCGCTTCATTGAGAACTACAGGCGCCACATCGGCTG < 41bp 0.309321957810221 0.739537470646279 0.03183028 0.3197658 prediction 0.479074941292558 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45444177 chr15:45444181 synonymous SNV . 0 25 hm5C_associated_SNPs_111458 0 0 0 0 1 DUOX1 chr15:45444250 5'GT 45444250 Upstream 70bp
chrX 128927070 128927070 1 + C A PAAD 128927069 + 128927049 128927089 41 AACATCATGGATCCACAGCACCGGGCCAAGCTGCTCACGGC AACATCATGGATCCACAGCACAGGGCCAAGCTGCTCACGGC < 41bp 0.562840925444205 0.802376230704239 0.47570682 0.7429328 prediction 0.479070610520069 Functional Gain - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128927069 chrX:128927070 synonymous SNV . 0 22 hm5C_associated_SNPs_111459 0 0 0 0 1 SASH3 chrX:128927115 5'GT 128927115 Upstream 46bp
chr17 40452767 40452767 1 + C T CESC 40452766 + 40452746 40452786 41 GCCGAGATCATCTGGCAGAACCGGCAGCAGATCCGCAGGGC GCCGAGATCATCTGGCAGAACTGGCAGCAGATCCGCAGGGC < 41bp 0.51186316058872 0.751396410609753 0.8781282 0.8687423 prediction 0.479066500042066 Functional Gain - STAT5A ENSG00000126561 CDS Human protein_coding chr17:40452766 chr17:40452767 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111460 0 0 0 0 1 STAT5A chr17:40452733 3'AG 40452733 Downstream 35bp
chr15 55632978 55632978 1 + C T UCEC 55632977 + 55632957 55632997 41 TATCTAGCACCAAAGAGATACCGGATACTTTTGGTGACTGT TATCTAGCACCAAAGAGATACTGGATACTTTTGGTGACTGT < 41bp 0.526668696984342 0.766199452434109 0.25055796 0.5963415 prediction 0.479061510899534 Functional Gain - PIGB ENSG00000069943 CDS Human protein_coding chr15:55632977 chr15:55632978 nonsynonymous SNV 0.303 1 22 hm5C_associated_SNPs_111461 0 0 1 0 1 PIGB chr15:55633021 5'GT 55633021 Upstream 44bp
chrX 48759276 48759276 1 + C A OV 48759275 + 48759255 48759295 41 CTCCCCACATGACCCCAACTCCGTGGTTACCAAATCGGCCA CTCCCCACATGACCCCAACTCAGTGGTTACCAAATCGGCCA < 41bp 0.503363877808855 0.742884771506944 0.209463 0.43862435 prediction 0.479041787396178 Functional Gain - PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759275 chrX:48759276 synonymous SNV . 0 22 hm5C_associated_SNPs_111466 0 0 1 0 2 PQBP1 chrX:48759207 3'AG 48759207 Downstream 70bp
chrX 48759276 48759276 1 + C A OV 48759275 + 48759255 48759295 41 CTCCCCACATGACCCCAACTCCGTGGTTACCAAATCGGCCA CTCCCCACATGACCCCAACTCAGTGGTTACCAAATCGGCCA < 41bp 0.503363877808855 0.742884771506944 0.209463 0.43862435 prediction 0.479041787396178 Functional Gain - PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759275 chrX:48759276 synonymous SNV . 0 22 hm5C_associated_SNPs_111466 0 0 1 0 2 PQBP1 chrX:48759319 5'GT 48759319 Upstream 44bp
chr16 30199713 30199713 1 + C A rs150857828 30199709 + 30199689 30199729 41 TGTTCCAGGAGGACCTGTACCCACCCACCGCAGGGCCCGAC TGTTCCAGGAGGACCTGTACCCACACACCGCAGGGCCCGAC < 41bp 0.332405922691218 0.739516537333386 0.088338345 0.38268852 prediction 0.479033074666773 Functional Gain - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30199709 chr16:30199713 nonsynonymous SNV 0.760 2 25 hm5C_associated_SNPs_111468 0 0 0 0 1 CORO1A chr16:30199682 3'AG 30199682 Downstream 32bp
chr11 10796810 10796810 1 + C G rs75206030 10796809 + 10796789 10796829 41 AAACAGAAAATGGCCCCAAACCAAAAAAACGACGTCCACCA AAACAGAAAATGGCCCCAAACGAAAAAAACGACGTCCACCA < 41bp 0.426779793098544 0.739510438661979 0.8822833 0.6213133 prediction 0.479020877323958 Functional Gain - CTR9 ENSG00000198730 CDS Human protein_coding chr11:10796809 chr11:10796810 nonsynonymous SNV 0.786 0 22 hm5C_associated_SNPs_111469 0 0 1 0 2 CTR9 chr11:10796754 3'AG 10796754 Downstream 57bp
chr11 10796810 10796810 1 + C G rs75206030 10796809 + 10796789 10796829 41 AAACAGAAAATGGCCCCAAACCAAAAAAACGACGTCCACCA AAACAGAAAATGGCCCCAAACGAAAAAAACGACGTCCACCA < 41bp 0.426779793098544 0.739510438661979 0.8822833 0.6213133 prediction 0.479020877323958 Functional Gain - CTR9 ENSG00000198730 CDS Human protein_coding chr11:10796809 chr11:10796810 nonsynonymous SNV 0.786 0 22 hm5C_associated_SNPs_111469 0 0 1 0 2 CTR9 chr11:10796850 5'GT 10796850 Upstream 41bp
chr2 3718768 3718768 1 + C A rs373415935 3718767 + 3718747 3718787 41 GATGGACATGGCATCTGAATCCGTAGGAGGAAAAGTAAGTG GATGGACATGGCATCTGAATCAGTAGGAGGAAAAGTAAGTG < 41bp 0.518427574243299 0.757936241026645 0.6256332 0.87432015 prediction 0.479017333566691 Functional Gain - ALLC ENSG00000151360 CDS Human protein_coding chr2:3718767 chr2:3718768 synonymous SNV . 0 22 hm5C_associated_SNPs_111470 0 0 0 0 2 ALLC chr2:3718686 3'AG 3718686 Downstream 83bp
chr2 3718768 3718768 1 + C A rs373415935 3718767 + 3718747 3718787 41 GATGGACATGGCATCTGAATCCGTAGGAGGAAAAGTAAGTG GATGGACATGGCATCTGAATCAGTAGGAGGAAAAGTAAGTG < 41bp 0.518427574243299 0.757936241026645 0.6256332 0.87432015 prediction 0.479017333566691 Functional Gain - ALLC ENSG00000151360 CDS Human protein_coding chr2:3718767 chr2:3718768 synonymous SNV . 0 22 hm5C_associated_SNPs_111470 0 0 0 0 2 ALLC chr2:3718780 5'GT 3718780 Upstream 13bp
chr1 202276493 202276493 1 + C A LUSC 202276489 + 202276469 202276509 41 GGAACGCCATCCGGTCCATCCACCCCGAGGCCTTCTCCACC GGAACGCCATCCGGTCCATCCACCACGAGGCCTTCTCCACC < 41bp 0.296091659540456 0.739503102313571 0.22453916 0.11033416 prediction 0.479006204627142 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202276489 chr1:202276493 nonsynonymous SNV 0.955 4 25 hm5C_associated_SNPs_111471 0 0 0 0 2 LGR6 chr1:202276458 3'AG 202276458 Downstream 36bp
chr1 202276493 202276493 1 + C A LUSC 202276489 + 202276469 202276509 41 GGAACGCCATCCGGTCCATCCACCCCGAGGCCTTCTCCACC GGAACGCCATCCGGTCCATCCACCACGAGGCCTTCTCCACC < 41bp 0.296091659540456 0.739503102313571 0.22453916 0.11033416 prediction 0.479006204627142 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202276489 chr1:202276493 nonsynonymous SNV 0.955 4 25 hm5C_associated_SNPs_111471 0 0 0 0 2 LGR6 chr1:202276529 5'GT 202276529 Upstream 37bp
chr18 61379924 61379924 1 + T C LUAD 61379922 + 61379902 61379942 41 GGACAAAGACGATGGCATTTCATCAGGTAAGTCCATTTGGA GGACAAAGACGATGGCATTTCACCAGGTAAGTCCATTTGGA < 41bp 0.488297314965391 0.739500680909569 0.29146677 0.48189265 prediction 0.479001361819139 Functional Gain - SERPINB11 ENSG00000206072 CDS Human protein_coding chr18:61379922 chr18:61379924 unknown . 0 23 hm5C_associated_SNPs_111472 0 0 0 0 1 SERPINB11 chr18:61379927 5'GT 61379927 Upstream 4bp
chr7 2695756 2695756 1 + A G COAD 2695753 + 2695733 2695773 41 TCCTCCGCGTCCAGGAGGTGCTGAATGGCACGGAGGTGAAC TCCTCCGCGTCCAGGAGGTGCTGGATGGCACGGAGGTGAAC < 41bp 0.503201875595283 0.742695018935765 0.8507268 0.89677924 prediction 0.478986286680965 Functional Gain - TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2695753 chr7:2695756 nonsynonymous SNV 0.901 3 24 hm5C_associated_SNPs_111475 0 0 1 0 2 TTYH3 chr7:2695726 3'AG 2695726 Downstream 31bp
chr7 2695756 2695756 1 + A G COAD 2695753 + 2695733 2695773 41 TCCTCCGCGTCCAGGAGGTGCTGAATGGCACGGAGGTGAAC TCCTCCGCGTCCAGGAGGTGCTGGATGGCACGGAGGTGAAC < 41bp 0.503201875595283 0.742695018935765 0.8507268 0.89677924 prediction 0.478986286680965 Functional Gain - TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2695753 chr7:2695756 nonsynonymous SNV 0.901 3 24 hm5C_associated_SNPs_111475 0 0 1 0 2 TTYH3 chr7:2695818 5'GT 2695818 Upstream 63bp
chr1 41232309 41232309 1 + C G rs145113974 41232308 + 41232288 41232328 41 GCTGCAGTATATCCGCTTAGCCCAGCCTGTATCAGGCACTC GCTGCAGTATATCCGCTTAGCGCAGCCTGTATCAGGCACTC < 41bp 0.43362910535641 0.739492322984605 0.1580793 0.43569458 prediction 0.47898464596921 Functional Gain - NFYC ENSG00000066136 CDS Human protein_coding chr1:41232308 chr1:41232309 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_111476 0 0 1 0 2 NFYC chr1:41232268 3'AG 41232268 Downstream 42bp
chr1 41232309 41232309 1 + C G rs145113974 41232308 + 41232288 41232328 41 GCTGCAGTATATCCGCTTAGCCCAGCCTGTATCAGGCACTC GCTGCAGTATATCCGCTTAGCGCAGCCTGTATCAGGCACTC < 41bp 0.43362910535641 0.739492322984605 0.1580793 0.43569458 prediction 0.47898464596921 Functional Gain - NFYC ENSG00000066136 CDS Human protein_coding chr1:41232308 chr1:41232309 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_111476 0 0 1 0 2 NFYC chr1:41232375 5'GT 41232375 Upstream 67bp
chr3 119534274 119534274 1 + C A STAD 119534270 + 119534250 119534290 41 TATGTGCTGATGCAGGCCATCTCCCTCTTCTCCCCAGGTGA TATGTGCTGATGCAGGCCATCTCCATCTTCTCCCCAGGTGA < 41bp 0.30257796782685 0.739490302422671 0.22428 0.94443834 prediction 0.478980604845342 Functional Gain - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119534270 chr3:119534274 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_111477 0 0 0 0 1 NR1I2 chr3:119534286 5'GT 119534286 Upstream 13bp
chr18 8819226 8819226 1 + C T SKCM 8819225 + 8819205 8819245 41 AAGAGCCACCAGCCCACAGGCCCGAGAGGGAGTTCAGGAAC AAGAGCCACCAGCCCACAGGCTCGAGAGGGAGTTCAGGAAC < 41bp 0.582032526858733 0.821517534243473 0.10787186 0.12718505 prediction 0.47897001476948 Functional Gain - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8819225 chr18:8819226 nonsynonymous SNV 0.194 0 22 hm5C_associated_SNPs_111479 0 0 0 0 1 MTCL1 chr18:8819257 5'GT 8819257 Upstream 32bp
chr12 27107157 27107157 1 + T C UCEC 27107155 + 27107135 27107175 41 TTGTTGAAAGATTAAGAGATCATGACGATGCAGCAGAATCT TTGTTGAAAGATTAAGAGATCACGACGATGCAGCAGAATCT < 41bp 0.581239853066467 0.820724514373153 0.028739959 0.026488453 prediction 0.478969322613371 Functional Gain - FGFR1OP2 ENSG00000111790 CDS Human protein_coding chr12:27107155 chr12:27107157 synonymous SNV . 0 23 hm5C_associated_SNPs_111481 0 0 1 0 2 FGFR1OP2 chr12:27107078 3'AG 27107078 Downstream 80bp
chr12 27107157 27107157 1 + T C UCEC 27107155 + 27107135 27107175 41 TTGTTGAAAGATTAAGAGATCATGACGATGCAGCAGAATCT TTGTTGAAAGATTAAGAGATCACGACGATGCAGCAGAATCT < 41bp 0.581239853066467 0.820724514373153 0.028739959 0.026488453 prediction 0.478969322613371 Functional Gain - FGFR1OP2 ENSG00000111790 CDS Human protein_coding chr12:27107155 chr12:27107157 synonymous SNV . 0 23 hm5C_associated_SNPs_111481 0 0 1 0 2 FGFR1OP2 chr12:27107226 5'GT 27107226 Upstream 70bp
chr8 57358377 57358377 1 - G A SKCM 57358378 - 57358358 57358398 41 CGCCCGGCCGACATCAACTTCCTGGTGAGTGTTGCGCGCGG CGCCCGGCCGACATCAACTTCTTGGTGAGTGTTGCGCGCGG < 41bp 0.504871858539838 0.74434870284462 0.1605986 0.16217905 prediction 0.478953688609564 Functional Gain - PENK ENSG00000181195 CDS Human protein_coding chr8:57358378 chr8:57358377 synonymous SNV . 0 22 hm5C_associated_SNPs_111485 0 0 0 0 1 PENK chr8:57358375 5'GT 57358375 Upstream 3bp
chr6 71567878 71567878 1 + C T LUSC 71567877 + 71567857 71567897 41 GGTGGGACAAATGGGTGCACCCCAGAGTAAGTTTGGCCTGC GGTGGGACAAATGGGTGCACCTCAGAGTAAGTTTGGCCTGC < 41bp 0.489169077912 0.739473782874241 0.617954 0.7974952 prediction 0.478947565748482 Functional Gain - SMAP1 ENSG00000112305 CDS Human protein_coding chr6:71567877 chr6:71567878 synonymous SNV . 0 22 hm5C_associated_SNPs_111486 0 0 0 0 1 SMAP1 chr6:71567932 5'GT 71567932 Upstream 55bp
chr2 219674417 219674417 1 + C T BLCA 219674416 + 219674396 219674436 41 ATGCGGCAAGAGGGCAAGTACCCAGTACGGAACGACATGGA ATGCGGCAAGAGGGCAAGTACTCAGTACGGAACGACATGGA < 41bp 0.471209170064855 0.73947025263037 0.30122638 0.5090622 prediction 0.478940505260739 Functional Gain - CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219674416 chr2:219674417 nonsynonymous SNV 0.944 4 22 hm5C_associated_SNPs_111488 0 0 1 0 1 CYP27A1 chr2:219674490 5'GT 219674490 Upstream 74bp
chr7 12680120 12680120 1 + C A GBM 12680116 + 12680096 12680136 41 TCTTTCAAGTCCGGAGAAACCTGGCATCTATCACCAGAATT TCTTTCAAGTCCGGAGAAACCTGGAATCTATCACCAGAATT < 41bp 0.688263236522465 0.927730897125277 0.56811893 0.5454028 prediction 0.478935321205622 Functional Gain - SCIN ENSG00000006747 CDS Human protein_coding chr7:12680116 chr7:12680120 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_111490 0 0 0 0 1 SCIN chr7:12680142 5'GT 12680142 Upstream 23bp
chr2 239353021 239353021 1 + C A READ 239353020 + 239353000 239353040 41 ACGTCAACCACCACCTGACTCCTGATGTCCAGCCTCGATTC ACGTCAACCACCACCTGACTCATGATGTCCAGCCTCGATTC < 41bp 0.553714865858282 0.79318174176417 0.21766955 0.34079427 prediction 0.478933751811777 Functional Gain - ASB1 ENSG00000065802 CDS Human protein_coding chr2:239353020 chr2:239353021 nonsynonymous SNV 0.959 1 22 hm5C_associated_SNPs_111491 0 0 1 0 1 ASB1 chr2:239352983 3'AG 239352983 Downstream 39bp
chr2 219290476 219290476 1 + C T UCEC 219290475 + 219290455 219290495 41 AAGGGCCGGGCTGTGCAGCACCGCGAGGTCCAGGGCAACGA AAGGGCCGGGCTGTGCAGCACTGCGAGGTCCAGGGCAACGA < 41bp 0.479235838573409 0.739458468359055 0.16397244 0.1575009 prediction 0.478916936718109 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219290475 chr2:219290476 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_111495 0 0 1 0 1 VIL1 chr2:219290534 5'GT 219290534 Upstream 59bp
chr2 238973090 238973090 1 + C T SKCM 238973089 + 238973069 238973109 41 TGTGGGAAGCCTGGGGAAATCCCAGCAGCCCGTATTCAGCA TGTGGGAAGCCTGGGGAAATCTCAGCAGCCCGTATTCAGCA < 41bp 0.487533202014168 0.739458420153858 0.2834717 0.19493547 prediction 0.478916840307716 Functional Gain - SCLY ENSG00000132330 CDS Human protein_coding chr2:238973089 chr2:238973090 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_111496 0 0 1 0 2 SCLY chr2:238972998 3'AG 238972998 Downstream 93bp
chr2 238973090 238973090 1 + C T SKCM 238973089 + 238973069 238973109 41 TGTGGGAAGCCTGGGGAAATCCCAGCAGCCCGTATTCAGCA TGTGGGAAGCCTGGGGAAATCTCAGCAGCCCGTATTCAGCA < 41bp 0.487533202014168 0.739458420153858 0.2834717 0.19493547 prediction 0.478916840307716 Functional Gain - SCLY ENSG00000132330 CDS Human protein_coding chr2:238973089 chr2:238973090 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_111496 0 0 1 0 2 SCLY chr2:238973110 5'GT 238973110 Upstream 21bp
chr13 53608550 53608550 1 + A G THYM 53608547 + 53608527 53608567 41 CCAGTGCTCTGTTTCCCTGCCAGACACCACCTTTCCCGTGG CCAGTGCTCTGTTTCCCTGCCAGGCACCACCTTTCCCGTGG < 41bp 0.518857580910879 0.758307679180751 0.24371836 0.40260357 prediction 0.478900196539743 Functional Gain - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53608547 chr13:53608550 nonsynonymous SNV 0.951 2 24 hm5C_associated_SNPs_111499 0 0 0 0 2 OLFM4 chr13:53608483 3'AG 53608483 Downstream 68bp
chr13 53608550 53608550 1 + A G THYM 53608547 + 53608527 53608567 41 CCAGTGCTCTGTTTCCCTGCCAGACACCACCTTTCCCGTGG CCAGTGCTCTGTTTCCCTGCCAGGCACCACCTTTCCCGTGG < 41bp 0.518857580910879 0.758307679180751 0.24371836 0.40260357 prediction 0.478900196539743 Functional Gain - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53608547 chr13:53608550 nonsynonymous SNV 0.951 2 24 hm5C_associated_SNPs_111499 0 0 0 0 2 OLFM4 chr13:53608635 5'GT 53608635 Upstream 86bp
chr11 20385887 20385887 1 + T C UCEC 20385885 + 20385865 20385905 41 GGAGAAACCGGCAGAGTGCTCTTAAAGGAAATCCTGGAGCA GGAGAAACCGGCAGAGTGCTCTCAAAGGAAATCCTGGAGCA < 41bp 0.57101827406162 0.810453898121553 0.13413069 0.35823077 prediction 0.478871248119867 Functional Gain - HTATIP2 ENSG00000109854 CDS Human protein_coding chr11:20385885 chr11:20385887 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_111502 0 0 1 0 1 HTATIP2 chr11:20385978 5'GT 20385978 Upstream 92bp
chr4 53728768 53728768 1 + C G LUSC 53728764 + 53728744 53728784 41 TGCTGTGTGGGCGCCGCCGGCCGCCGCCTGGTCAAGATCGC TGCTGTGTGGGCGCCGCCGGCCGCGGCCTGGTCAAGATCGC < 41bp 0.557673840309101 0.79709852687093 0.09610167 0.3713444 prediction 0.478849373123658 Functional Gain - RASL11B ENSG00000128045 CDS Human protein_coding chr4:53728764 chr4:53728768 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_111505 0 0 0 0 1 RASL11B chr4:53728816 5'GT 53728816 Upstream 49bp
chr19 39591793 39591793 1 + C T UCEC 39591792 + 39591772 39591812 41 CTCATTCACCCTGCCCAGGTCCGCAAAGGCCTCCAAGGCAA CTCATTCACCCTGCCCAGGTCTGCAAAGGCCTCCAAGGCAA < 41bp 0.557747797851166 0.797167361239985 0.02883026 0.2140995 prediction 0.478839126777637 Functional Gain - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39591792 chr19:39591793 nonsynonymous SNV 0.981 4 22 hm5C_associated_SNPs_111506 0 0 0 0 2 ACP7 chr19:39591790 3'AG 39591790 Downstream 4bp
chr19 39591793 39591793 1 + C T UCEC 39591792 + 39591772 39591812 41 CTCATTCACCCTGCCCAGGTCCGCAAAGGCCTCCAAGGCAA CTCATTCACCCTGCCCAGGTCTGCAAAGGCCTCCAAGGCAA < 41bp 0.557747797851166 0.797167361239985 0.02883026 0.2140995 prediction 0.478839126777637 Functional Gain - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39591792 chr19:39591793 nonsynonymous SNV 0.981 4 22 hm5C_associated_SNPs_111506 0 0 0 0 2 ACP7 chr19:39591847 5'GT 39591847 Upstream 55bp
chr6 24418700 24418700 1 + T C UCEC 24418698 + 24418678 24418718 41 CTCCTCTCCAGCCACCGAAACGTGATGATGAGGTTGAATCT CTCCTCTCCAGCCACCGAAACGCGATGATGAGGTTGAATCT < 41bp 0.60596343796125 0.845370419154859 0.3030916 0.7992221 prediction 0.478813962387219 Functional Gain - MRS2 ENSG00000124532 CDS Human protein_coding chr6:24418698 chr6:24418700 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_111508 0 0 1 0 1 MRS2 chr6:24418689 3'AG 24418689 Downstream 12bp
chr17 1634494 1634494 1 + C T STAD 1634493 + 1634473 1634513 41 ACACTCATGGACATCCTGCCCCGGATCAGCCATGAGGTCCT ACACTCATGGACATCCTGCCCTGGATCAGCCATGAGGTCCT < 41bp 0.526226702982285 0.765629058178899 0.15833199 0.12608913 prediction 0.478804710393227 Functional Gain - WDR81 ENSG00000167716 CDS Human protein_coding chr17:1634493 chr17:1634494 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_111509 0 0 0 0 1 WDR81 chr17:1634552 5'GT 1634552 Upstream 59bp
chr7 128356957 128356957 1 + C T SKCM 128356956 + 128356936 128356976 41 TCGGTACCCTGCCTGCCCCTCCCCAACATCCTACTCATGGC TCGGTACCCTGCCTGCCCCTCTCCAACATCCTACTCATGGC < 41bp 0.58814795280935 0.827546993466053 0.07237521 0.97632384 prediction 0.478798081313406 Functional Gain - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128356956 chr7:128356957 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_111510 0 0 0 0 2 FAM71F1 chr7:128356867 3'AG 128356867 Downstream 91bp
chr7 128356957 128356957 1 + C T SKCM 128356956 + 128356936 128356976 41 TCGGTACCCTGCCTGCCCCTCCCCAACATCCTACTCATGGC TCGGTACCCTGCCTGCCCCTCTCCAACATCCTACTCATGGC < 41bp 0.58814795280935 0.827546993466053 0.07237521 0.97632384 prediction 0.478798081313406 Functional Gain - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128356956 chr7:128356957 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_111510 0 0 0 0 2 FAM71F1 chr7:128357051 5'GT 128357051 Upstream 95bp
chr17 9596508 9596508 1 + C T UCEC 9596507 + 9596487 9596527 41 TGGCCTGCAGCTATTTGTCTCCGAAGGACAGTCGGCCCCTC TGGCCTGCAGCTATTTGTCTCTGAAGGACAGTCGGCCCCTC < 41bp 0.548538431618354 0.78792155523921 0.34611273 0.05952376 prediction 0.47876624724171 Functional Gain - USP43 ENSG00000154914 CDS Human protein_coding chr17:9596507 chr17:9596508 nonsynonymous SNV 0.037 3 22 hm5C_associated_SNPs_111513 0 0 0 0 2 USP43 chr17:9596444 3'AG 9596444 Downstream 65bp
chr17 9596508 9596508 1 + C T UCEC 9596507 + 9596487 9596527 41 TGGCCTGCAGCTATTTGTCTCCGAAGGACAGTCGGCCCCTC TGGCCTGCAGCTATTTGTCTCTGAAGGACAGTCGGCCCCTC < 41bp 0.548538431618354 0.78792155523921 0.34611273 0.05952376 prediction 0.47876624724171 Functional Gain - USP43 ENSG00000154914 CDS Human protein_coding chr17:9596507 chr17:9596508 nonsynonymous SNV 0.037 3 22 hm5C_associated_SNPs_111513 0 0 0 0 2 USP43 chr17:9596547 5'GT 9596547 Upstream 40bp
chr1 110168320 110168320 1 + C T SKCM 110168319 + 110168299 110168339 41 TCACTGGCTGAGAGCGAGCTCCGTAGTGCCCCGTATGAGTT TCACTGGCTGAGAGCGAGCTCTGTAGTGCCCCGTATGAGTT < 41bp 0.526545768590853 0.765925541306787 0.22648492 0.16036731 prediction 0.478759545431869 Functional Gain - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110168319 chr1:110168320 nonsynonymous SNV 0.982 3 22 hm5C_associated_SNPs_111515 0 0 1 0 2 AMPD2 chr1:110168284 3'AG 110168284 Downstream 37bp
chr1 110168320 110168320 1 + C T SKCM 110168319 + 110168299 110168339 41 TCACTGGCTGAGAGCGAGCTCCGTAGTGCCCCGTATGAGTT TCACTGGCTGAGAGCGAGCTCTGTAGTGCCCCGTATGAGTT < 41bp 0.526545768590853 0.765925541306787 0.22648492 0.16036731 prediction 0.478759545431869 Functional Gain - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110168319 chr1:110168320 nonsynonymous SNV 0.982 3 22 hm5C_associated_SNPs_111515 0 0 1 0 2 AMPD2 chr1:110168414 5'GT 110168414 Upstream 95bp
chr22 38355452 38355452 1 + C T COAD 38355451 + 38355431 38355471 41 ATGACCAAGTACGAGCGAGCCCGCGTGCTGGGCACCCGAGC ATGACCAAGTACGAGCGAGCCTGCGTGCTGGGCACCCGAGC < 41bp 0.537667473240759 0.777038033004328 0.5920265 0.6121198 prediction 0.478741119527137 Functional Gain - POLR2F ENSG00000100142 CDS Human protein_coding chr22:38355451 chr22:38355452 nonsynonymous SNV 0.988 4 22 hm5C_associated_SNPs_111517 0 0 1 0 2 POLR2F chr22:38355353 3'AG 38355353 Downstream 100bp
chr22 38355452 38355452 1 + C T COAD 38355451 + 38355431 38355471 41 ATGACCAAGTACGAGCGAGCCCGCGTGCTGGGCACCCGAGC ATGACCAAGTACGAGCGAGCCTGCGTGCTGGGCACCCGAGC < 41bp 0.537667473240759 0.777038033004328 0.5920265 0.6121198 prediction 0.478741119527137 Functional Gain - POLR2F ENSG00000100142 CDS Human protein_coding chr22:38355451 chr22:38355452 nonsynonymous SNV 0.988 4 22 hm5C_associated_SNPs_111517 0 0 1 0 2 POLR2F chr22:38355483 5'GT 38355483 Upstream 32bp
chr11 57575738 57575738 1 + C T ESCA 57575737 + 57575717 57575757 41 GAAGCCTCAGCTGGAGCTATCCAGAACTTGTGTGCTGGGCG GAAGCCTCAGCTGGAGCTATCTAGAACTTGTGTGCTGGGCG < 41bp 0.519306489625143 0.758671594982078 0.4842214 0.35377526 prediction 0.478730210713871 Functional Gain - CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57575737 chr11:57575738 stopgain 1.000 1 22 hm5C_associated_SNPs_111518 0 0 1 0 1 CTNND1 chr11:57575764 5'GT 57575764 Upstream 27bp
chr2 235943705 235943705 1 + A G UCEC 235943702 + 235943682 235943722 41 TGGCCTCCCTCGCTGCAAGTCAGAGGGGACCCTGATTGACC TGGCCTCCCTCGCTGCAAGTCAGGGGGGACCCTGATTGACC < 41bp 0.511816981031457 0.75118151133425 0.908143 0.9319946 prediction 0.478729060605586 Functional Gain - SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235943702 chr2:235943705 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_111519 0 0 1 0 1 SH3BP4 chr2:235943764 5'GT 235943764 Upstream 60bp
chr19 15770125 15770125 1 + C T SKCM 15770124 + 15770104 15770144 41 TCCTGCCTGACCACACCGAGCCCCGCAGGAAGCCGGAGCTG TCCTGCCTGACCACACCGAGCTCCGCAGGAAGCCGGAGCTG < 41bp 0.523231134173217 0.762582304783745 0.22125971 0.19968742 prediction 0.478702341221057 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15770124 chr19:15770125 nonsynonymous SNV 0.051 1 22 hm5C_associated_SNPs_111522 0 0 0 0 1 CYP4F3 chr19:15770030 3'AG 15770030 Downstream 96bp
chr15 81571979 81571979 1 + C A LUAD 81571978 + 81571958 81571998 41 CCTGTGCAGCCACCTGTCTCCCCCACTGTGCCGCTCCCTGA CCTGTGCAGCCACCTGTCTCCACCACTGTGCCGCTCCCTGA < 41bp 0.504022337159466 0.743368474945289 0.037065655 0.061926007 prediction 0.478692275571647 Functional Gain - IL16 ENSG00000172349 CDS Human protein_coding chr15:81571978 chr15:81571979 synonymous SNV . 0 22 hm5C_associated_SNPs_111523 0 0 0 0 1 IL16 chr15:81571899 3'AG 81571899 Downstream 81bp
chr5 169535115 169535115 1 + C T GBM 169535114 + 169535094 169535134 41 ATGTTCGACAATGGAAATTTCCGCAGGAAAAGGAAGAGAAA ATGTTCGACAATGGAAATTTCTGCAGGAAAAGGAAGAGAAA < 41bp 0.529943027050565 0.769289102697957 0.5560931 0.37340683 prediction 0.478692151294784 Functional Gain - FOXI1 ENSG00000168269 CDS Human protein_coding chr5:169535114 chr5:169535115 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_111524 0 0 0 0 1 FOXI1 chr5:169535053 3'AG 169535053 Downstream 63bp
chr1 22986096 22986096 1 + C A LUAD 22986095 + 22986075 22986115 41 TATCCCTGGGACACCTGGCCCCGATGGCCAACCTGGGACCC TATCCCTGGGACACCTGGCCCAGATGGCCAACCTGGGACCC < 41bp 0.474028680226936 0.739336703265846 0.2652968 0.8886841 prediction 0.478673406531691 Functional Gain - C1QB ENSG00000173369 CDS Human protein_coding chr1:22986095 chr1:22986096 synonymous SNV . 0 22 hm5C_associated_SNPs_111526 0 0 0 0 1 C1QB chr1:22986136 5'GT 22986136 Upstream 41bp
chr6 46632580 46632580 1 + C A UCEC 46632576 + 46632556 46632596 41 AGGAATACGAGGGCTTTGGGCAGGCTGGGTACCCAATATAC AGGAATACGAGGGCTTTGGGCAGGATGGGTACCCAATATAC < 41bp 0.683983387025585 0.923313121882288 0.7189622 0.81944317 prediction 0.478659469713406 Functional Gain - SLC25A27 ENSG00000153291 CDS Human protein_coding chr6:46632576 chr6:46632580 synonymous SNV . 0 25 hm5C_associated_SNPs_111529 0 0 1 0 2 SLC25A27 chr6:46632511 3'AG 46632511 Downstream 70bp
chr6 46632580 46632580 1 + C A UCEC 46632576 + 46632556 46632596 41 AGGAATACGAGGGCTTTGGGCAGGCTGGGTACCCAATATAC AGGAATACGAGGGCTTTGGGCAGGATGGGTACCCAATATAC < 41bp 0.683983387025585 0.923313121882288 0.7189622 0.81944317 prediction 0.478659469713406 Functional Gain - SLC25A27 ENSG00000153291 CDS Human protein_coding chr6:46632576 chr6:46632580 synonymous SNV . 0 25 hm5C_associated_SNPs_111529 0 0 1 0 2 SLC25A27 chr6:46632623 5'GT 46632623 Upstream 44bp
chr19 16631002 16631002 1 - G A HNSC 16631003 - 16630983 16631023 41 CCCGGTCCAAGTCGTACTCCCCAGGAAGAAGACGCCGGTCA CCCGGTCCAAGTCGTACTCCCTAGGAAGAAGACGCCGGTCA < 41bp 0.517805865608324 0.757124030210384 0.2906431 0.282632 prediction 0.47863632920412 Functional Gain - CHERP ENSG00000085872 CDS Human protein_coding chr19:16631003 chr19:16631002 nonsynonymous SNV 0.545 0 22 hm5C_associated_SNPs_111537 0 0 1 0 2 CHERP chr19:16630960 5'GT 16630960 Upstream 43bp
chr19 16631002 16631002 1 - G A HNSC 16631003 - 16630983 16631023 41 CCCGGTCCAAGTCGTACTCCCCAGGAAGAAGACGCCGGTCA CCCGGTCCAAGTCGTACTCCCTAGGAAGAAGACGCCGGTCA < 41bp 0.517805865608324 0.757124030210384 0.2906431 0.282632 prediction 0.47863632920412 Functional Gain - CHERP ENSG00000085872 CDS Human protein_coding chr19:16631003 chr19:16631002 nonsynonymous SNV 0.545 0 22 hm5C_associated_SNPs_111537 0 0 1 0 2 CHERP chr19:16631076 3'AG 16631076 Downstream 75bp
chr19 8429466 8429466 1 + C A LUSC 8429465 + 8429445 8429485 41 TCAGGGAACCGAGGGGTCCACCGACCTCCCGTTAGCCCCTG TCAGGGAACCGAGGGGTCCACAGACCTCCCGTTAGCCCCTG < 41bp 0.539943636523413 0.779252668895874 0.7859764 0.86255515 prediction 0.478618064744923 Functional Gain - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8429465 chr19:8429466 synonymous SNV . 0 22 hm5C_associated_SNPs_111539 0 0 0 0 1 ANGPTL4 chr19:8429523 5'GT 8429523 Upstream 58bp
chr5 133895560 133895560 1 + C T SKCM 133895559 + 133895539 133895579 41 GGCCCCCCTGCCCAGGCATCCCCGAGCAGCACCATGCTTGG GGCCCCCCTGCCCAGGCATCCTCGAGCAGCACCATGCTTGG < 41bp 0.561357416727617 0.800659331230038 0.3564598 0.4354924 prediction 0.478603829004842 Functional Gain - JADE2 ENSG00000043143 CDS Human protein_coding chr5:133895559 chr5:133895560 nonsynonymous SNV 0.019 2 22 hm5C_associated_SNPs_111543 0 0 0 0 1 JADE2 chr5:133895520 3'AG 133895520 Downstream 41bp
chrX 129063396 129063396 1 + C T LUSC 129063395 + 129063375 129063415 41 ATAGGATCCACATGGAACACCCAGAGGGCTTTCCAAAAGCT ATAGGATCCACATGGAACACCTAGAGGGCTTTCCAAAAGCT < 41bp 0.529901888825791 0.769202498710353 0.021945477 0.033903867 prediction 0.478601219769123 Functional Gain - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129063395 chrX:129063396 stopgain 0.999 1 22 hm5C_associated_SNPs_111544 0 0 0 0 1 UTP14A chrX:129063312 3'AG 129063312 Downstream 85bp
chr11 6261374 6261374 1 + T G PRAD 6261372 + 6261352 6261392 41 GTTCGCACCTGGAGTTTCTTCTTGGACCTGGCTTCCCTGAT GTTCGCACCTGGAGTTTCTTCTGGGACCTGGCTTCCCTGAT < 41bp 0.664892114829886 0.90419125464976 0.18161908 0.8980628 prediction 0.478598279639748 Functional Gain - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6261372 chr11:6261374 nonsynonymous SNV 0.981 1 23 hm5C_associated_SNPs_111545 0 0 0 0 1 CNGA4 chr11:6261296 3'AG 6261296 Downstream 79bp
chr17 26851602 26851602 1 + C T rs2071587 26851601 + 26851581 26851621 41 TCACTGCCCCCACACAGCCCCCGCATTGCGTCACCAGGGCC TCACTGCCCCCACACAGCCCCTGCATTGCGTCACCAGGGCC < 41bp 0.530075748293257 0.76936795693498 0.002649933 0.018254757 prediction 0.478584417283446 Functional Gain - FOXN1 ENSG00000109101 CDS Human protein_coding chr17:26851601 chr17:26851602 nonsynonymous SNV 0.873 2 22 hm5C_associated_SNPs_111547 2 0 0 0 1 FOXN1 chr17:26851521 3'AG 26851521 Downstream 82bp
chr4 2696768 2696768 1 + A G COAD 2696765 + 2696745 2696785 41 TGCAGATGAGGACAGCTGCTCTGAGCACAGCTCCAGCACCT TGCAGATGAGGACAGCTGCTCTGGGCACAGCTCCAGCACCT < 41bp 0.5179479004331 0.757235022517156 0.034650415 0.27988744 prediction 0.47857424416811 Functional Gain - FAM193A ENSG00000125386 CDS Human protein_coding chr4:2696765 chr4:2696768 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_111550 0 0 1 0 2 FAM193A chr4:2696673 3'AG 2696673 Downstream 96bp
chr4 2696768 2696768 1 + A G COAD 2696765 + 2696745 2696785 41 TGCAGATGAGGACAGCTGCTCTGAGCACAGCTCCAGCACCT TGCAGATGAGGACAGCTGCTCTGGGCACAGCTCCAGCACCT < 41bp 0.5179479004331 0.757235022517156 0.034650415 0.27988744 prediction 0.47857424416811 Functional Gain - FAM193A ENSG00000125386 CDS Human protein_coding chr4:2696765 chr4:2696768 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_111550 0 0 1 0 2 FAM193A chr4:2696856 5'GT 2696856 Upstream 89bp
chr3 46622629 46622629 1 + T C rs112928637 46622627 + 46622607 46622647 41 ATCCCTACCTTCCAGATGGCCTTGTGATGGATGAGCACCTC ATCCCTACCTTCCAGATGGCCTCGTGATGGATGAGCACCTC < 41bp 0.475300759262247 0.739286493173925 0.025506735 0.022980183 prediction 0.478572986347849 Functional Gain - TDGF1 ENSG00000241186 CDS Human protein_coding chr3:46622627 chr3:46622629 synonymous SNV . 0 23 hm5C_associated_SNPs_111551 0 0 0 0 1 TDGF1 chr3:46622622 3'AG 46622622 Downstream 8bp
chr17 73221452 73221452 1 + A G GBM 73221449 + 73221429 73221469 41 TCCCTTAGCCCGGGAACACCCAGACACTGACAGAGCTGGAG TCCCTTAGCCCGGGAACACCCAGGCACTGACAGAGCTGGAG < 41bp 0.510359399748147 0.749644054452533 0.47279426 0.8975477 prediction 0.478569309408771 Functional Gain - NUP85 ENSG00000125450 CDS Human protein_coding chr17:73221449 chr17:73221452 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_111552 0 0 1 0 1 NUP85 chr17:73221437 3'AG 73221437 Downstream 16bp
chrX 3028281 3028281 1 + C T SKCM 3028280 + 3028260 3028300 41 CTGCACGCCGTGCGGTGGATCCCCAAGGACGACAGTGAGTG CTGCACGCCGTGCGGTGGATCTCCAAGGACGACAGTGAGTG < 41bp 0.571903369174665 0.811187060601452 0.025863051 0.96885127 prediction 0.478567382853575 Functional Gain - ARSF ENSG00000062096 CDS Human protein_coding chrX:3028280 chrX:3028281 nonsynonymous SNV 0.060 3 22 hm5C_associated_SNPs_111553 0 0 0 0 1 ARSF chrX:3028293 5'GT 3028293 Upstream 13bp
chr19 46178071 46178071 1 + C A rs1800436 46178067 + 46178047 46178087 41 CCTACCTTGGGGACCAGGCCCTTGCGCTGTGGAACCAGGTG CCTACCTTGGGGACCAGGCCCTTGAGCTGTGGAACCAGGTG < 41bp 0.3191325775827 0.73927435790599 0.15863281 0.27175832 prediction 0.47854871581198 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46178067 chr19:46178071 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_111555 0 0 1 0 1 GIPR chr19:46178084 5'GT 46178084 Upstream 14bp
chr10 119305202 119305202 1 + C A rs8192642 119305198 + 119305178 119305218 41 AACGCGCTGGCCCGAAAGCCCAAGCGGATCCGAACCGCCTT AACGCGCTGGCCCGAAAGCCCAAGAGGATCCGAACCGCCTT < 41bp 0.686023850962751 0.925294228920621 0.8656895 0.8659864 prediction 0.47854075591574 Functional Gain - EMX2 ENSG00000170370 CDS Human protein_coding chr10:119305198 chr10:119305202 synonymous SNV . 0 25 hm5C_associated_SNPs_111557 0 0 0 0 1 EMX2 chr10:119305143 3'AG 119305143 Downstream 60bp
chr7 99956323 99956323 1 + A G LIHC 99956320 + 99956300 99956340 41 CTCCTTCCTCTAGGTGGCTCCACAGGATCTGGTCCAAGCTA CTCCTTCCTCTAGGTGGCTCCACGGGATCTGGTCCAAGCTA < 41bp 0.492595215265476 0.739268313574765 0.38214752 0.88370764 prediction 0.47853662714953 Functional Gain - PILRB ENSG00000121716 CDS Human protein_coding chr7:99956320 chr7:99956323 synonymous SNV . 0 24 hm5C_associated_SNPs_111558 0 0 0 0 1 PILRB chr7:99956313 3'AG 99956313 Downstream 11bp
chr3 99513128 99513128 1 + C T SKCM 99513127 + 99513107 99513147 41 GTCCCCGTGGAGAGCCTGGCCCAAGAGGACCACCTGGGCCC GTCCCCGTGGAGAGCCTGGCCTAAGAGGACCACCTGGGCCC < 41bp 0.503138036924736 0.742402359384571 0.1740402 0.1083183 prediction 0.478528644919669 Functional Gain - COL8A1 ENSG00000144810 CDS Human protein_coding chr3:99513127 chr3:99513128 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_111559 0 0 0 0 2 MIR548G chr3:99513071 3'AG 99513071 Downstream 58bp
chr3 99513128 99513128 1 + C T SKCM 99513127 + 99513107 99513147 41 GTCCCCGTGGAGAGCCTGGCCCAAGAGGACCACCTGGGCCC GTCCCCGTGGAGAGCCTGGCCTAAGAGGACCACCTGGGCCC < 41bp 0.503138036924736 0.742402359384571 0.1740402 0.1083183 prediction 0.478528644919669 Functional Gain - COL8A1 ENSG00000144810 CDS Human protein_coding chr3:99513127 chr3:99513128 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_111559 0 0 0 0 2 COL8A1 chr3:99513074 3'AG 99513074 Downstream 55bp
chr10 115451827 115451827 1 + C A UCEC 115451826 + 115451806 115451846 41 ATTTGTGCTTCTTATGTTACCCAGGTGAGGTACTCTGGTGT ATTTGTGCTTCTTATGTTACCAAGGTGAGGTACTCTGGTGT < 41bp 0.535543440679986 0.774787447384845 0.68518156 0.8969434 prediction 0.478488013409717 Functional Gain - CASP7 ENSG00000165806 CDS Human protein_coding chr10:115451826 chr10:115451827 nonsynonymous SNV 0.115 0 22 hm5C_associated_SNPs_111569 0 0 1 0 2 CASP7 chr10:115451756 3'AG 115451756 Downstream 72bp
chr10 115451827 115451827 1 + C A UCEC 115451826 + 115451806 115451846 41 ATTTGTGCTTCTTATGTTACCCAGGTGAGGTACTCTGGTGT ATTTGTGCTTCTTATGTTACCAAGGTGAGGTACTCTGGTGT < 41bp 0.535543440679986 0.774787447384845 0.68518156 0.8969434 prediction 0.478488013409717 Functional Gain - CASP7 ENSG00000165806 CDS Human protein_coding chr10:115451826 chr10:115451827 nonsynonymous SNV 0.115 0 22 hm5C_associated_SNPs_111569 0 0 1 0 2 CASP7 chr10:115451829 5'GT 115451829 Upstream 3bp
chr1 236918364 236918364 1 + C T COAD 236918363 + 236918343 236918383 41 ATCACAGGAGCCCTGGAAGACCAGATGAACCAGCTGAAGCA ATCACAGGAGCCCTGGAAGACTAGATGAACCAGCTGAAGCA < 41bp 0.563428510531124 0.802669277073512 0.89992255 0.2608743 prediction 0.478481533084775 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236918363 chr1:236918364 stopgain 1.000 1 22 hm5C_associated_SNPs_111572 0 0 0 0 1 ACTN2 chr1:236918319 3'AG 236918319 Downstream 46bp
chr17 63173899 63173899 1 + C T SKCM 63173898 + 63173878 63173918 41 GCCTGGACCGAGTGACCAATCCGAATGAAGTCAAGGTAAAC GCCTGGACCGAGTGACCAATCTGAATGAAGTCAAGGTAAAC < 41bp 0.542998306792289 0.782237292139046 0.24583831 0.088341594 prediction 0.478477970693513 Functional Gain - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63173898 chr17:63173899 nonsynonymous SNV 0.971 3 22 hm5C_associated_SNPs_111573 0 0 0 0 3 RGS9 chr17:63173850 3'AG 63173850 Downstream 50bp
chr17 63173899 63173899 1 + C T SKCM 63173898 + 63173878 63173918 41 GCCTGGACCGAGTGACCAATCCGAATGAAGTCAAGGTAAAC GCCTGGACCGAGTGACCAATCTGAATGAAGTCAAGGTAAAC < 41bp 0.542998306792289 0.782237292139046 0.24583831 0.088341594 prediction 0.478477970693513 Functional Gain - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63173898 chr17:63173899 nonsynonymous SNV 0.971 3 22 hm5C_associated_SNPs_111573 0 0 0 0 3 RGS9 chr17:63173912 5'GT 63173912 Upstream 14bp
chr17 63173899 63173899 1 + C T SKCM 63173898 + 63173878 63173918 41 GCCTGGACCGAGTGACCAATCCGAATGAAGTCAAGGTAAAC GCCTGGACCGAGTGACCAATCTGAATGAAGTCAAGGTAAAC < 41bp 0.542998306792289 0.782237292139046 0.24583831 0.088341594 prediction 0.478477970693513 Functional Gain - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63173898 chr17:63173899 nonsynonymous SNV 0.971 3 22 hm5C_associated_SNPs_111573 0 0 0 0 3 RGS9 chr17:63173921 5'GT 63173921 Upstream 23bp
chr19 18304781 18304781 1 + C T SKCM 18304780 + 18304760 18304800 41 CTCCGAGGCTTCCCAAATGTCCTCAAGAAGGTCCTCGTGGA CTCCGAGGCTTCCCAAATGTCTTCAAGAAGGTCCTCGTGGA < 41bp 0.504960601684975 0.744198193763659 0.0422222 0.101148665 prediction 0.478475184157369 Functional Gain - MPV17L2 ENSG00000254858 CDS Human protein_coding chr19:18304780 chr19:18304781 nonsynonymous SNV 0.226 1 22 hm5C_associated_SNPs_111574 0 0 0 0 1 MPV17L2 chr19:18304844 5'GT 18304844 Upstream 64bp
chr7 2565185 2565185 1 + T A LIHC 2565181 + 2565161 2565201 41 GGCCCATCCAGGCCATGGAGCGGGTCAGCGAGAACAAGGTG GGCCCATCCAGGCCATGGAGCGGGACAGCGAGAACAAGGTG < 41bp 0.635259825972241 0.874491066188989 0.8450376 0.8868216 prediction 0.478462480433495 Functional Gain - LFNG ENSG00000106003 CDS Human protein_coding chr7:2565181 chr7:2565185 nonsynonymous SNV 0.898 0 25 hm5C_associated_SNPs_111575 0 0 0 0 1 LFNG chr7:2565201 5'GT 2565201 Upstream 17bp
chr22 25007132 25007132 1 + A G rs4049897 25007129 + 25007109 25007149 41 GGCCTCTGTCTCTGGCTGCCCTCAGCCTCCAAGGAACCTGA GGCCTCTGTCTCTGGCTGCCCTCGGCCTCCAAGGAACCTGA < 41bp 0.517850094589081 0.757081313010968 0.06992823 0.3107515 prediction 0.478462436843774 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25007129 chr22:25007132 synonymous SNV . 0 24 hm5C_associated_SNPs_111576 0 0 1 0 3 GGT1 chr22:25007042 3'AG 25007042 Downstream 91bp
chr22 25007132 25007132 1 + A G rs4049897 25007129 + 25007109 25007149 41 GGCCTCTGTCTCTGGCTGCCCTCAGCCTCCAAGGAACCTGA GGCCTCTGTCTCTGGCTGCCCTCGGCCTCCAAGGAACCTGA < 41bp 0.517850094589081 0.757081313010968 0.06992823 0.3107515 prediction 0.478462436843774 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25007129 chr22:25007132 synonymous SNV . 0 24 hm5C_associated_SNPs_111576 0 0 1 0 3 GGT1 chr22:25007045 3'AG 25007045 Downstream 88bp
chr22 25007132 25007132 1 + A G rs4049897 25007129 + 25007109 25007149 41 GGCCTCTGTCTCTGGCTGCCCTCAGCCTCCAAGGAACCTGA GGCCTCTGTCTCTGGCTGCCCTCGGCCTCCAAGGAACCTGA < 41bp 0.517850094589081 0.757081313010968 0.06992823 0.3107515 prediction 0.478462436843774 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25007129 chr22:25007132 synonymous SNV . 0 24 hm5C_associated_SNPs_111576 0 0 1 0 3 GGT1 chr22:25007212 5'GT 25007212 Upstream 81bp
chr1 214803928 214803928 1 + C A BRCA 214803927 + 214803907 214803947 41 ACACTGGACCAGGAGTGCATCCAGATGAAGGCCAGACTCAC ACACTGGACCAGGAGTGCATCAAGATGAAGGCCAGACTCAC < 41bp 0.489095891496386 0.739220881425885 0.91503143 0.88415086 prediction 0.47844176285177 Functional Gain - CENPF ENSG00000117724 CDS Human protein_coding chr1:214803927 chr1:214803928 nonsynonymous SNV 0.057 2 22 hm5C_associated_SNPs_111578 0 0 1 0 2 CENPF chr1:214803877 3'AG 214803877 Downstream 52bp
chr1 214803928 214803928 1 + C A BRCA 214803927 + 214803907 214803947 41 ACACTGGACCAGGAGTGCATCCAGATGAAGGCCAGACTCAC ACACTGGACCAGGAGTGCATCAAGATGAAGGCCAGACTCAC < 41bp 0.489095891496386 0.739220881425885 0.91503143 0.88415086 prediction 0.47844176285177 Functional Gain - CENPF ENSG00000117724 CDS Human protein_coding chr1:214803927 chr1:214803928 nonsynonymous SNV 0.057 2 22 hm5C_associated_SNPs_111578 0 0 1 0 2 CENPF chr1:214804005 5'GT 214804005 Upstream 78bp
chr2 3718723 3718723 1 + C G rs146521098 3718722 + 3718702 3718742 41 TCCGAAGGAGGGAAGACTGACCCGGTTTCTGGACTTCACCC TCCGAAGGAGGGAAGACTGACGCGGTTTCTGGACTTCACCC < 41bp 0.607346689596629 0.846564633454103 0.17840996 0.5618574 prediction 0.478435887714947 Functional Gain - ALLC ENSG00000151360 UTR5 Human protein_coding chr2:3718722 chr2:3718723 . . 0 22 hm5C_associated_SNPs_111580 0 0 0 0 2 ALLC chr2:3718686 3'AG 3718686 Downstream 38bp
chr2 3718723 3718723 1 + C G rs146521098 3718722 + 3718702 3718742 41 TCCGAAGGAGGGAAGACTGACCCGGTTTCTGGACTTCACCC TCCGAAGGAGGGAAGACTGACGCGGTTTCTGGACTTCACCC < 41bp 0.607346689596629 0.846564633454103 0.17840996 0.5618574 prediction 0.478435887714947 Functional Gain - ALLC ENSG00000151360 UTR5 Human protein_coding chr2:3718722 chr2:3718723 . . 0 22 hm5C_associated_SNPs_111580 0 0 0 0 2 ALLC chr2:3718780 5'GT 3718780 Upstream 58bp
chr1 110560140 110560140 1 + T A LIHC 110560136 + 110560116 110560156 41 GGTAGGCAAGGGCTGCTGTGCTGCTCTCAAAGCTCTTGGAG GGTAGGCAAGGGCTGCTGTGCTGCACTCAAAGCTCTTGGAG < 41bp 0.39582755936736 0.73921740715026 0.07427266 0.068041086 prediction 0.478434814300519 Functional Gain - AHCYL1 ENSG00000168710 CDS Human protein_coding chr1:110560136 chr1:110560140 synonymous SNV . 0 25 hm5C_associated_SNPs_111581 0 0 1 0 2 AHCYL1 chr1:110560117 3'AG 110560117 Downstream 24bp
chr1 110560140 110560140 1 + T A LIHC 110560136 + 110560116 110560156 41 GGTAGGCAAGGGCTGCTGTGCTGCTCTCAAAGCTCTTGGAG GGTAGGCAAGGGCTGCTGTGCTGCACTCAAAGCTCTTGGAG < 41bp 0.39582755936736 0.73921740715026 0.07427266 0.068041086 prediction 0.478434814300519 Functional Gain - AHCYL1 ENSG00000168710 CDS Human protein_coding chr1:110560136 chr1:110560140 synonymous SNV . 0 25 hm5C_associated_SNPs_111581 0 0 1 0 2 AHCYL1 chr1:110560205 5'GT 110560205 Upstream 66bp
chr19 855966 855966 1 + C A rs17216649 855965 + 855945 855985 41 TCTGCCTCCACAGGGGGACTCCGGCAGCCCCTTGGTCTGCA TCTGCCTCCACAGGGGGACTCAGGCAGCCCCTTGGTCTGCA < 41bp 0.481167823622478 0.739212695951239 0.87225693 0.9159117 prediction 0.478425391902478 Functional Gain - ELANE ENSG00000197561 CDS Human protein_coding chr19:855965 chr19:855966 synonymous SNV . 0 22 hm5C_associated_SNPs_111586 1 0 0 0 1 ELANE chr19:855958 3'AG 855958 Downstream 9bp
chr9 124521255 124521255 1 + C A rs114266755 124521251 + 124521231 124521271 41 GATAAGTGGATGGAGAACCTCCGGCGAGCGGTGCATCCCAA GATAAGTGGATGGAGAACCTCCGGAGAGCGGTGCATCCCAA < 41bp 0.324495010178621 0.73919957633028 0.8823794 0.8346809 prediction 0.47839915266056 Functional Gain - DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124521251 chr9:124521255 synonymous SNV . 0 25 hm5C_associated_SNPs_111590 0 0 1 0 2 DAB2IP chr9:124521177 3'AG 124521177 Downstream 79bp
chr9 124521255 124521255 1 + C A rs114266755 124521251 + 124521231 124521271 41 GATAAGTGGATGGAGAACCTCCGGCGAGCGGTGCATCCCAA GATAAGTGGATGGAGAACCTCCGGAGAGCGGTGCATCCCAA < 41bp 0.324495010178621 0.73919957633028 0.8823794 0.8346809 prediction 0.47839915266056 Functional Gain - DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124521251 chr9:124521255 synonymous SNV . 0 25 hm5C_associated_SNPs_111590 0 0 1 0 2 DAB2IP chr9:124521275 5'GT 124521275 Upstream 21bp
chr2 20867314 20867314 1 + C A LUAD 20867310 + 20867290 20867330 41 GAGCCTGGCCGGGAGGGCTCCGGCCGGGGCAGCCGCTGTCT GAGCCTGGCCGGGAGGGCTCCGGCAGGGGCAGCCGCTGTCT < 41bp 0.676264787484815 0.915458425768249 0.8914381 0.89821774 prediction 0.478387276566868 Functional Gain - GDF7 ENSG00000143869 CDS Human protein_coding chr2:20867310 chr2:20867314 synonymous SNV . 0 25 hm5C_associated_SNPs_111591 0 0 1 0 1 GDF7 chr2:20867390 5'GT 20867390 Upstream 77bp
chr20 34287582 34287582 1 + C G OV 34287578 + 34287558 34287598 41 CCGGTGGCCGTGGGTCCCTACGGACAGTCCCAGCCAAGCTG CCGGTGGCCGTGGGTCCCTACGGAGAGTCCCAGCCAAGCTG < 41bp 0.602968818899943 0.842159376733055 0.22365797 0.8873677 prediction 0.478381115666225 Functional Gain - ROMO1 ENSG00000125995 CDS Human protein_coding chr20:34287578 chr20:34287582 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_111593 0 0 1 0 1 ROMO1 chr20:34287555 3'AG 34287555 Downstream 28bp
chr6 50683291 50683291 1 + C A HNSC 50683290 + 50683270 50683310 41 AGACTCCTGCCAGGGCCCAGCCTGGGGCTGGCCGCCGCGGG AGACTCCTGCCAGGGCCCAGCATGGGGCTGGCCGCCGCGGG < 41bp 0.480706746098755 0.739189911739297 0.7881377 0.8689325 prediction 0.478379823478595 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50683290 chr6:50683291 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111594 0 0 0 0 1 TFAP2D chr6:50683326 5'GT 50683326 Upstream 36bp
chr9 37735666 37735666 1 + C A LUAD 37735662 + 37735642 37735682 41 TTGGCAGAGTTTGCAAACATCAGCCGTGTAGAGCTAACGGA TTGGCAGAGTTTGCAAACATCAGCAGTGTAGAGCTAACGGA < 41bp 0.314062336190044 0.739189511784488 0.19292513 0.20849833 prediction 0.478379023568976 Functional Gain - FRMPD1 ENSG00000070601 CDS Human protein_coding chr9:37735662 chr9:37735666 nonsynonymous SNV 0.980 2 25 hm5C_associated_SNPs_111595 0 0 0 0 1 FRMPD1 chr9:37735731 5'GT 37735731 Upstream 66bp
chr19 50212049 50212049 1 + C A PRAD 50212048 + 50212028 50212068 41 CACTGCAAGGGGCACCCGGACCCCACACTACCCCAGCCCCA CACTGCAAGGGGCACCCGGACACCACACTACCCCAGCCCCA < 41bp 0.521920320539057 0.761104445227062 0.15290111 0.18085521 prediction 0.47836824937601 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50212048 chr19:50212049 nonsynonymous SNV 0.006 3 22 hm5C_associated_SNPs_111597 0 0 0 0 2 CPT1C chr19:50211980 3'AG 50211980 Downstream 70bp
chr19 50212049 50212049 1 + C A PRAD 50212048 + 50212028 50212068 41 CACTGCAAGGGGCACCCGGACCCCACACTACCCCAGCCCCA CACTGCAAGGGGCACCCGGACACCACACTACCCCAGCCCCA < 41bp 0.521920320539057 0.761104445227062 0.15290111 0.18085521 prediction 0.47836824937601 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50212048 chr19:50212049 nonsynonymous SNV 0.006 3 22 hm5C_associated_SNPs_111597 0 0 0 0 2 CPT1C chr19:50212096 5'GT 50212096 Upstream 48bp
chr15 23444079 23444079 1 + T C rs201795491 23444077 + 23444057 23444097 41 ATGCCGAGTGTCCCAGAGGACCTGGAGAGCAGGGAGGCCAT ATGCCGAGTGTCCCAGAGGACCCGGAGAGCAGGGAGGCCAT < 41bp 0.49287684919053 0.739180810249435 0.68317664 0.8163674 prediction 0.47836162049887 Functional Gain - GOLGA8EP ENSG00000175676 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:23444077 chr15:23444079 . . 0 23 hm5C_associated_SNPs_111600 0 0 0 0 2 GOLGA8EP chr15:23444007 3'AG 23444007 Downstream 73bp
chr15 23444079 23444079 1 + T C rs201795491 23444077 + 23444057 23444097 41 ATGCCGAGTGTCCCAGAGGACCTGGAGAGCAGGGAGGCCAT ATGCCGAGTGTCCCAGAGGACCCGGAGAGCAGGGAGGCCAT < 41bp 0.49287684919053 0.739180810249435 0.68317664 0.8163674 prediction 0.47836162049887 Functional Gain - GOLGA8EP ENSG00000175676 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:23444077 chr15:23444079 . . 0 23 hm5C_associated_SNPs_111600 0 0 0 0 2 GOLGA8EP chr15:23444098 5'GT 23444098 Upstream 20bp
chr1 32740399 32740399 1 + C T SKCM 32740398 + 32740378 32740418 41 TTACCTACGAAGGCTCCAATCCGCCGGCTTCCCCACTGCAA TTACCTACGAAGGCTCCAATCTGCCGGCTTCCCCACTGCAA < 41bp 0.485594731684793 0.739174705219713 0.9104423 0.49549568 prediction 0.478349410439425 Functional Gain - LCK ENSG00000182866 CDS Human protein_coding chr1:32740398 chr1:32740399 nonsynonymous SNV 0.016 2 22 hm5C_associated_SNPs_111601 0 0 0 0 2 LCK chr1:32740338 3'AG 32740338 Downstream 62bp
chr1 32740399 32740399 1 + C T SKCM 32740398 + 32740378 32740418 41 TTACCTACGAAGGCTCCAATCCGCCGGCTTCCCCACTGCAA TTACCTACGAAGGCTCCAATCTGCCGGCTTCCCCACTGCAA < 41bp 0.485594731684793 0.739174705219713 0.9104423 0.49549568 prediction 0.478349410439425 Functional Gain - LCK ENSG00000182866 CDS Human protein_coding chr1:32740398 chr1:32740399 nonsynonymous SNV 0.016 2 22 hm5C_associated_SNPs_111601 0 0 0 0 2 LCK chr1:32740419 5'GT 32740419 Upstream 21bp
chr3 52239990 52239990 1 + C A PRAD 52239986 + 52239966 52240006 41 TGCCGCACTCTTGTTTTCCTCGTGCTTTGTGGCCAATGACT TGCCGCACTCTTGTTTTCCTCGTGATTTGTGGCCAATGACT < 41bp 0.322504193737543 0.739173416962195 0.11363849 0.16217268 prediction 0.478346833924391 Functional Gain - ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52239986 chr3:52239990 stopgain 0.990 1 25 hm5C_associated_SNPs_111602 0 0 1 0 1 ALAS1 chr3:52240039 5'GT 52240039 Upstream 50bp
chr3 113673215 113673215 1 + T A SKCM 113673211 + 113673191 113673231 41 CAGCCCGGGCATGGCACTGCCGGATATGTGGCATCTGTGTG CAGCCCGGGCATGGCACTGCCGGAAATGTGGCATCTGTGTG < 41bp 0.434728337905988 0.739162768342437 0.8203193 0.739287 prediction 0.478325536684873 Functional Gain - ZDHHC23 ENSG00000184307 CDS Human protein_coding chr3:113673211 chr3:113673215 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_111609 0 0 1 0 1 ZDHHC23 chr3:113673257 5'GT 113673257 Upstream 43bp
chr5 88185225 88185225 1 + C A rs532519604 88185221 + 88185201 88185241 41 CCCCTTCCCCCCCCCCTTTTCTCCCGGCCGACGGAGCTGAA CCCCTTCCCCCCCCCCTTTTCTCCAGGCCGACGGAGCTGAA < 41bp 0.359874702173784 0.739162657452715 0.31827348 0.9382431 prediction 0.47832531490543 Functional Gain - MEF2C-AS1 ENSG00000248309 ncRNA_exonic Human antisense chr5:88185221 chr5:88185225 . . 0 25 hm5C_associated_SNPs_111610 0 0 0 0 1 MEF2C-AS1 chr5:88185297 5'GT 88185297 Upstream 73bp
chr10 131959215 131959215 1 + C A STAD 131959211 + 131959191 131959231 41 CTTGAAGAAATTGACTCATGCTGCCCCCTGCATGCTGTTTA CTTGAAGAAATTGACTCATGCTGCACCCTGCATGCTGTTTA < 41bp 0.316573950295255 0.739159527898028 0.018506676 0.017433286 prediction 0.478319055796056 Functional Gain - GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131959211 chr10:131959215 synonymous SNV . 0 25 hm5C_associated_SNPs_111611 0 0 0 2 1 GLRX3 chr10:131959261 5'GT 131959261 Upstream 47bp
chr16 20477011 20477011 1 + C A LUSC 20477010 + 20476990 20477030 41 CAGTGGTGCTGCCCCGAGTGCCTGAGTGGTGGCTGGTGATC CAGTGGTGCTGCCCCGAGTGCATGAGTGGTGGCTGGTGATC < 41bp 0.553999023679216 0.793147525820894 0.16351205 0.25535786 prediction 0.478297004283356 Functional Gain - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20477010 chr16:20477011 nonsynonymous SNV 0.886 4 22 hm5C_associated_SNPs_111613 0 0 0 1 1 ACSM2A chr16:20477049 5'GT 20477049 Upstream 39bp
chr20 9382161 9382161 1 + C T SKCM 9382160 + 9382140 9382180 41 ACCAAGAGGAGGAAGCTCACCCCGAATTCAAATTTGGAAAT ACCAAGAGGAGGAAGCTCACCTCGAATTCAAATTTGGAAAT < 41bp 0.544931423017705 0.784079699688416 0.10918537 0.82212836 prediction 0.478296553341422 Functional Gain - PLCB4 ENSG00000101333 CDS Human protein_coding chr20:9382160 chr20:9382161 nonsynonymous SNV 0.912 0 22 hm5C_associated_SNPs_111614 0 0 0 0 2 PLCB4 chr20:9382137 3'AG 9382137 Downstream 25bp
chr20 9382161 9382161 1 + C T SKCM 9382160 + 9382140 9382180 41 ACCAAGAGGAGGAAGCTCACCCCGAATTCAAATTTGGAAAT ACCAAGAGGAGGAAGCTCACCTCGAATTCAAATTTGGAAAT < 41bp 0.544931423017705 0.784079699688416 0.10918537 0.82212836 prediction 0.478296553341422 Functional Gain - PLCB4 ENSG00000101333 CDS Human protein_coding chr20:9382160 chr20:9382161 nonsynonymous SNV 0.912 0 22 hm5C_associated_SNPs_111614 0 0 0 0 2 PLCB4 chr20:9382237 5'GT 9382237 Upstream 77bp
chr8 23106783 23106783 1 + C T SKCM 23106782 + 23106762 23106802 41 TGTAGACAGCAGCTGGATCTCCTGGGGGGTTGGGGTCTTCC TGTAGACAGCAGCTGGATCTCTTGGGGGGTTGGGGTCTTCC < 41bp 0.489064511546216 0.739130208991243 0.90186286 0.13004428 prediction 0.478260417982486 Functional Gain - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23106782 chr8:23106783 synonymous SNV . 0 22 hm5C_associated_SNPs_111615 0 0 1 0 1 CHMP7 chr8:23106723 3'AG 23106723 Downstream 61bp
chr7 74197909 74197909 1 + C T SKCM 74197908 + 74197888 74197928 41 AAAGCAAAGCGAGGCTGGATCCCAGCGTCCTTCCTCGAGCC AAAGCAAAGCGAGGCTGGATCTCAGCGTCCTTCCTCGAGCC < 41bp 0.54628344212306 0.78540730812887 0.6166316 0.66303664 prediction 0.478247732011621 Functional Gain - NCF1 ENSG00000158517 CDS Human protein_coding chr7:74197908 chr7:74197909 nonsynonymous SNV 0.821 5 22 hm5C_associated_SNPs_111617 0 0 0 0 1 NCF1 chr7:74197868 3'AG 74197868 Downstream 42bp
chr1 1565702 1565702 1 + C G rs527303383 1565698 + 1565678 1565718 41 CTGAGGTGGCGAGCGCCGCCCCCGCCCCCGGCCCGCCGCGC CTGAGGTGGCGAGCGCCGCCCCCGGCCCCGGCCCGCCGCGC < 41bp 0.549556742626094 0.788677554947006 0.24251848 0.5940047 prediction 0.478241624641824 Functional Gain - MIB2 ENSG00000197530 CDS Human protein_coding chr1:1565698 chr1:1565702 nonsynonymous SNV 0.108 0 25 hm5C_associated_SNPs_111618 0 0 1 0 1 MIB2 chr1:1565672 3'AG 1565672 Downstream 31bp
chr3 50103767 50103767 1 + C T LUAD 50103766 + 50103746 50103786 41 AGAGGAGGAACAGACCCCTCCCCCACAGCCCCGCACAGCAC AGAGGAGGAACAGACCCCTCCTCCACAGCCCCGCACAGCAC < 41bp 0.4611599002996 0.739117049407625 0.056889743 0.9540434 prediction 0.47823409881525 Functional Gain - RBM6 ENSG00000004534 CDS Human protein_coding chr3:50103766 chr3:50103767 synonymous SNV . 0 22 hm5C_associated_SNPs_111620 0 0 1 0 1 RBM6 chr3:50103675 3'AG 50103675 Downstream 93bp
chr1 153615717 153615717 1 + C A LUAD 153615716 + 153615696 153615736 41 CTCTAAGGTCAAAACCTGCTCCGAGGTGGACGAGCCGTAGC CTCTAAGGTCAAAACCTGCTCAGAGGTGGACGAGCCGTAGC < 41bp 0.536624100396433 0.775740741290313 0.2716987 0.90932506 prediction 0.47823328178776 Functional Gain - CHTOP ENSG00000160679 CDS Human protein_coding chr1:153615716 chr1:153615717 synonymous SNV . 0 22 hm5C_associated_SNPs_111621 0 0 1 0 1 CHTOP chr1:153615703 3'AG 153615703 Downstream 15bp
chr4 113571723 113571723 1 + C A COAD 113571719 + 113571699 113571739 41 CATTAGCACAGAGCCTCTACCTGGCAGGAAACAAGTCCGGG CATTAGCACAGAGCCTCTACCTGGAAGGAAACAAGTCCGGG < 41bp 0.692209157153782 0.931313482718892 0.059709072 0.105268866 prediction 0.47820865113022 Functional Gain - LARP7 ENSG00000174720 CDS Human protein_coding chr4:113571719 chr4:113571723 synonymous SNV . 0 25 hm5C_associated_SNPs_111624 0 0 1 0 1 LARP7 chr4:113571738 5'GT 113571738 Upstream 16bp
chr16 31435274 31435274 1 + C T SKCM 31435273 + 31435253 31435293 41 AATCTCAGTTTCGGCTGGGTCCGCGAGGTGTGTGGGGGCAG AATCTCAGTTTCGGCTGGGTCTGCGAGGTGTGTGGGGGCAG < 41bp 0.495521832672139 0.739096931973284 0.29499865 0.32324955 prediction 0.478193863946568 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31435273 chr16:31435274 nonsynonymous SNV 0.541 2 22 hm5C_associated_SNPs_111628 0 0 0 0 1 ITGAD chr16:31435279 5'GT 31435279 Upstream 6bp
chr12 113624560 113624560 1 + C T CESC 113624559 + 113624539 113624579 41 GACCACAGGCAGCATGAAGACCCCCGTGGAGCTGGCCGTCA GACCACAGGCAGCATGAAGACTCCCGTGGAGCTGGCCGTCA < 41bp 0.503868347454471 0.742963112934753 0.29326046 0.24627423 prediction 0.478189530960563 Functional Gain - RITA1 ENSG00000139405 CDS Human protein_coding chr12:113624559 chr12:113624560 synonymous SNV . 0 22 hm5C_associated_SNPs_111629 0 0 1 0 1 RITA1 chr12:113624488 3'AG 113624488 Downstream 73bp
chr2 241992588 241992588 1 + C T COAD 241992587 + 241992567 241992607 41 CAGAGGTGGACTGCGGCCCCCCGGAGGAGGTGAAGCACGCC CAGAGGTGGACTGCGGCCCCCTGGAGGAGGTGAAGCACGCC < 41bp 0.517965583964181 0.757051542758903 0.8741033 0.88976127 prediction 0.478171917589445 Functional Gain - SNED1 ENSG00000162804 CDS Human protein_coding chr2:241992587 chr2:241992588 nonsynonymous SNV 0.899 4 22 hm5C_associated_SNPs_111630 0 0 0 0 1 SNED1 chr2:241992570 3'AG 241992570 Downstream 19bp
chr2 10863031 10863031 1 + T G SKCM 10863028 + 10863008 10863048 41 CGATAAGGAAAATTTGCAAGCTCTGGAGAGGATGAATACTG CGATAAGGAAAATTTGCAAGCTCGGGAGAGGATGAATACTG < 41bp 0.352885749277227 0.73908240311075 0.04661855 0.072055906 prediction 0.4781648062215 Functional Gain - ATP6V1C2 ENSG00000143882 CDS Human protein_coding chr2:10863028 chr2:10863031 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_111631 0 0 1 0 2 ATP6V1C2 chr2:10862950 3'AG 10862950 Downstream 82bp
chr2 10863031 10863031 1 + T G SKCM 10863028 + 10863008 10863048 41 CGATAAGGAAAATTTGCAAGCTCTGGAGAGGATGAATACTG CGATAAGGAAAATTTGCAAGCTCGGGAGAGGATGAATACTG < 41bp 0.352885749277227 0.73908240311075 0.04661855 0.072055906 prediction 0.4781648062215 Functional Gain - ATP6V1C2 ENSG00000143882 CDS Human protein_coding chr2:10863028 chr2:10863031 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_111631 0 0 1 0 2 ATP6V1C2 chr2:10863104 5'GT 10863104 Upstream 74bp
chr16 67201791 67201791 1 + C T CESC 67201790 + 67201770 67201810 41 AGGGAAAGGGAGCTTCAGCCCCGAGGGGCCCAGGAATGCCC AGGGAAAGGGAGCTTCAGCCCTGAGGGGCCCAGGAATGCCC < 41bp 0.519217282181906 0.758295431720325 0.28800324 0.16350222 prediction 0.478156299076839 Functional Gain - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67201790 chr16:67201791 stopgain . 0 22 hm5C_associated_SNPs_111632 0 0 1 0 2 HSF4 chr16:67201727 3'AG 67201727 Downstream 65bp
chr16 67201791 67201791 1 + C T CESC 67201790 + 67201770 67201810 41 AGGGAAAGGGAGCTTCAGCCCCGAGGGGCCCAGGAATGCCC AGGGAAAGGGAGCTTCAGCCCTGAGGGGCCCAGGAATGCCC < 41bp 0.519217282181906 0.758295431720325 0.28800324 0.16350222 prediction 0.478156299076839 Functional Gain - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67201790 chr16:67201791 stopgain . 0 22 hm5C_associated_SNPs_111632 0 0 1 0 2 HSF4 chr16:67201850 5'GT 67201850 Upstream 60bp
chr4 37455641 37455641 1 + C G rs182678062 37455637 + 37455617 37455657 41 GCGCCGGGACCCCGCCGCCGCCGCCGCCGCCGCCGTCTGGC GCGCCGGGACCCCGCCGCCGCCGCGGCCGCCGCCGTCTGGC < 41bp 0.551924442872286 0.7910011323208 0.23403898 0.43692422 prediction 0.478153378897029 Functional Gain - C4orf19 ENSG00000154274 UTR5 Human protein_coding chr4:37455637 chr4:37455641 . . 0 25 hm5C_associated_SNPs_111633 0 0 0 0 1 C4orf19 chr4:37455662 5'GT 37455662 Upstream 22bp
chr19 6743800 6743800 1 + C T UCEC 6743799 + 6743779 6743819 41 GCTCAACTGCAGCGCTTCAACCGAGACCAAGCCCACTTCTA GCTCAACTGCAGCGCTTCAACTGAGACCAAGCCCACTTCTA < 41bp 0.494101035232395 0.739066801516979 0.26253924 0.11554822 prediction 0.478133603033958 Functional Gain - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6743799 chr19:6743800 stopgain 0.997 1 22 hm5C_associated_SNPs_111636 0 0 1 0 2 TRIP10 chr19:6743719 3'AG 6743719 Downstream 82bp
chr19 6743800 6743800 1 + C T UCEC 6743799 + 6743779 6743819 41 GCTCAACTGCAGCGCTTCAACCGAGACCAAGCCCACTTCTA GCTCAACTGCAGCGCTTCAACTGAGACCAAGCCCACTTCTA < 41bp 0.494101035232395 0.739066801516979 0.26253924 0.11554822 prediction 0.478133603033958 Functional Gain - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6743799 chr19:6743800 stopgain 0.997 1 22 hm5C_associated_SNPs_111636 0 0 1 0 2 TRIP10 chr19:6743847 5'GT 6743847 Upstream 48bp
chrX 26158123 26158123 1 + C A HNSC 26158119 + 26158099 26158139 41 AGAACCACGTCTAGCAGCTTCTCCCATGCTAAGTGAAATCT AGAACCACGTCTAGCAGCTTCTCCAATGCTAAGTGAAATCT < 41bp 0.309534344860484 0.739059475460342 0.43469113 0.95883787 prediction 0.478118950920684 Functional Gain - MAGEB18 ENSG00000176774 CDS Human protein_coding chrX:26158119 chrX:26158123 nonsynonymous SNV 0.659 0 25 hm5C_associated_SNPs_111638 0 0 0 0 1 MAGEB18 chrX:26158170 5'GT 26158170 Upstream 48bp
chr17 61574280 61574280 1 + C T LUSC 61574279 + 61574259 61574299 41 AAGCCGCTGCTGGACTGGCTCCGCACGGAGAACGAGCTGCA AAGCCGCTGCTGGACTGGCTCTGCACGGAGAACGAGCTGCA < 41bp 0.526730541729667 0.765787705898832 0.25802857 0.3665535 prediction 0.478114328338331 Functional Gain - ACE ENSG00000159640;ENSG00000264813 CDS Human other chr17:61574279 chr17:61574280 nonsynonymous SNV 0.009 1 22 hm5C_associated_SNPs_111639 0 0 0 0 1 ACE chr17:61574346 5'GT 61574346 Upstream 67bp
chr1 247588870 247588870 1 + C T SKCM 247588869 + 247588849 247588889 41 GATATGGTGCAGTGTGTCCTCCCAAGCTCCTCTCATGCTGC GATATGGTGCAGTGTGTCCTCTCAAGCTCCTCTCATGCTGC < 41bp 0.50323667440493 0.742287456818196 0.37926465 0.54814386 prediction 0.478101564826531 Functional Gain - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247588869 chr1:247588870 nonsynonymous SNV 0.010 0 22 hm5C_associated_SNPs_111640 0 0 0 0 1 NLRP3 chr1:247588901 5'GT 247588901 Upstream 32bp
chr20 33508432 33508432 1 + T A STAD 33508428 + 33508408 33508448 41 TTCCATGCAGAGGATGTGTTCTGGTGCACGGCAGACATTGG TTCCATGCAGAGGATGTGTTCTGGAGCACGGCAGACATTGG < 41bp 0.639994142289002 0.879038176719692 0.26357055 0.21784377 prediction 0.47808806886138 Functional Gain - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33508428 chr20:33508432 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_111642 0 0 1 0 1 ACSS2 chr20:33508512 5'GT 33508512 Upstream 81bp
chr17 7490569 7490569 1 + C T UCEC 7490568 + 7490548 7490588 41 CTGTTTGGGGGCTCCCTGGCCCGAATCTTCACTTCCATTCA CTGTTTGGGGGCTCCCTGGCCTGAATCTTCACTTCCATTCA < 41bp 0.529610463779941 0.768653360278525 0.07609102 0.10781485 prediction 0.478085792997168 Functional Gain - MPDU1 ENSG00000129255 CDS Human protein_coding chr17:7490568 chr17:7490569 stopgain 0.998 3 22 hm5C_associated_SNPs_111643 0 0 1 0 2 MPDU1 chr17:7490479 3'AG 7490479 Downstream 91bp
chr17 7490569 7490569 1 + C T UCEC 7490568 + 7490548 7490588 41 CTGTTTGGGGGCTCCCTGGCCCGAATCTTCACTTCCATTCA CTGTTTGGGGGCTCCCTGGCCTGAATCTTCACTTCCATTCA < 41bp 0.529610463779941 0.768653360278525 0.07609102 0.10781485 prediction 0.478085792997168 Functional Gain - MPDU1 ENSG00000129255 CDS Human protein_coding chr17:7490568 chr17:7490569 stopgain 0.998 3 22 hm5C_associated_SNPs_111643 0 0 1 0 2 MPDU1 chr17:7490589 5'GT 7490589 Upstream 21bp
chrX 10106947 10106947 1 + C A LUAD 10106946 + 10106926 10106966 41 GTGCTTCGGGACGAGCGGCTCCGTGGCCTGCTGCGGGAGGC GTGCTTCGGGACGAGCGGCTCAGTGGCCTGCTGCGGGAGGC < 41bp 0.484145958779461 0.739028452612698 0.2744609 0.48148388 prediction 0.478056905225395 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10106946 chrX:10106947 nonsynonymous SNV 0.659 3 22 hm5C_associated_SNPs_111647 0 0 0 0 1 WWC3 chrX:10106976 5'GT 10106976 Upstream 30bp
chr15 72873126 72873126 1 + C A UCEC 72873125 + 72873105 72873145 41 TACTGTAATCGCTATATGAACCACATGCAGAGCCTGCGCTT TACTGTAATCGCTATATGAACAACATGCAGAGCCTGCGCTT < 41bp 0.531644595365605 0.770662223322746 0.0401963 0.059164613 prediction 0.478035255914282 Functional Gain - ARIH1 ENSG00000166233 CDS Human protein_coding chr15:72873125 chr15:72873126 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111649 0 0 1 0 1 ARIH1 chr15:72873072 3'AG 72873072 Downstream 55bp
chr16 3707971 3707971 1 + C G rs8176937 3707967 + 3707947 3707987 41 TGAAGTGAGCAGCCCCTCCCCACACCAGTTGAACTGCAGGA TGAAGTGAGCAGCCCCTCCCCACAGCAGTTGAACTGCAGGA < 41bp 0.448070097655977 0.739010032292868 0.14996132 0.14575326 prediction 0.478020064585735 Functional Gain - DNASE1 ENSG00000213918 UTR3 Human protein_coding chr16:3707967 chr16:3707971 . . 0 25 hm5C_associated_SNPs_111651 0 0 0 0 1 DNASE1 chr16:3707907 3'AG 3707907 Downstream 65bp
chr7 128845088 128845088 1 + A G rs56334250 128845085 + 128845065 128845105 41 TTCAACAGTTCAGGCCAGTGCGAAGTGCCCTTGGTTCGGAC TTCAACAGTTCAGGCCAGTGCGAGGTGCCCTTGGTTCGGAC < 41bp 0.49225157563286 0.739007577968293 0.32520187 0.84921515 prediction 0.478015155936586 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128845085 chr7:128845088 synonymous SNV . 0 24 hm5C_associated_SNPs_111653 0 0 1 0 1 SMO chr7:128845044 3'AG 128845044 Downstream 45bp
chr11 126276430 126276430 1 + C T KIRC 126276429 + 126276409 126276449 41 ATGGTGTGGTATTCCATCTCCCGGGAAGACAGGTACATCGA ATGGTGTGGTATTCCATCTCCTGGGAAGACAGGTACATCGA < 41bp 0.521442253872105 0.760444790584371 0.74742734 0.5134596 prediction 0.478005073424532 Functional Gain - ST3GAL4 ENSG00000110080 CDS Human protein_coding chr11:126276429 chr11:126276430 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_111654 0 0 1 0 2 ST3GAL4 chr11:126276440 5'GT 126276440 Upstream 11bp
chr11 126276430 126276430 1 + C T KIRC 126276429 + 126276409 126276449 41 ATGGTGTGGTATTCCATCTCCCGGGAAGACAGGTACATCGA ATGGTGTGGTATTCCATCTCCTGGGAAGACAGGTACATCGA < 41bp 0.521442253872105 0.760444790584371 0.74742734 0.5134596 prediction 0.478005073424532 Functional Gain - ST3GAL4 ENSG00000110080 CDS Human protein_coding chr11:126276429 chr11:126276430 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_111654 0 0 1 0 2 ST3GAL4 chr11:126276452 5'GT 126276452 Upstream 23bp
chrX 99854065 99854065 1 + C G LUAD 99854061 + 99854041 99854081 41 GGGAGAAGATCTTCACTTTCCTGCCAACGAAAAAAAAGGGA GGGAGAAGATCTTCACTTTCCTGCGAACGAAAAAAAAGGGA < 41bp 0.553604840128099 0.792592553744102 0.073596895 0.13590991 prediction 0.477975427232008 Functional Gain - TNMD ENSG00000000005 CDS Human protein_coding chrX:99854061 chrX:99854065 synonymous SNV . 0 25 hm5C_associated_SNPs_111657 0 0 0 0 1 TNMD chrX:99854013 3'AG 99854013 Downstream 53bp
chr12 32369208 32369208 1 + C T HNSC 32369207 + 32369187 32369227 41 GGGCAGTCCTTCTCCATCCACCGGAAGGTTGCTGAAGATGG GGGCAGTCCTTCTCCATCCACTGGAAGGTTGCTGAAGATGG < 41bp 0.540871312979682 0.77985835812504 0.12342882 0.13120219 prediction 0.477974090290715 Functional Gain - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32369207 chr12:32369208 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111659 0 0 1 0 1 BICD1 chr12:32369181 3'AG 32369181 Downstream 28bp
chr10 103919250 103919250 1 + C T OV 103919249 + 103919229 103919269 41 AAAGCAGCTACCACCCCTACCCGGAAGAGTTCTAGCAGTGA AAAGCAGCTACCACCCCTACCTGGAAGAGTTCTAGCAGTGA < 41bp 0.546436526552007 0.785410524981783 0.25741136 0.07955378 prediction 0.477947996859553 Functional Gain - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919249 chr10:103919250 nonsynonymous SNV 0.261 2 22 hm5C_associated_SNPs_111660 0 0 1 0 2 NOLC1 chr10:103919190 3'AG 103919190 Downstream 61bp
chr10 103919250 103919250 1 + C T OV 103919249 + 103919229 103919269 41 AAAGCAGCTACCACCCCTACCCGGAAGAGTTCTAGCAGTGA AAAGCAGCTACCACCCCTACCTGGAAGAGTTCTAGCAGTGA < 41bp 0.546436526552007 0.785410524981783 0.25741136 0.07955378 prediction 0.477947996859553 Functional Gain - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919249 chr10:103919250 nonsynonymous SNV 0.261 2 22 hm5C_associated_SNPs_111660 0 0 1 0 2 NOLC1 chr10:103919325 5'GT 103919325 Upstream 76bp
chr17 77705136 77705136 1 + C A LUSC 77705132 + 77705112 77705152 41 TTTGTCACCATGACCAGCCCCTGCCACTTCACCCTGGTCAC TTTGTCACCATGACCAGCCCCTGCAACTTCACCCTGGTCAC < 41bp 0.325607965526937 0.738961627371953 0.040030897 0.07771319 prediction 0.477923254743907 Functional Gain - ENPP7 ENSG00000182156 CDS Human protein_coding chr17:77705132 chr17:77705136 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_111665 0 0 0 0 1 ENPP7 chr17:77705154 5'GT 77705154 Upstream 19bp
chr1 116932304 116932304 1 + C T STAD 116932303 + 116932283 116932323 41 GTATCATCGTAGCCAATGTGCCGGAAGGTTTGCTGGCCACT GTATCATCGTAGCCAATGTGCTGGAAGGTTTGCTGGCCACT < 41bp 0.528769622088808 0.767727552532529 0.37535554 0.3149608 prediction 0.477915860887442 Functional Gain - ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116932303 chr1:116932304 nonsynonymous SNV 0.882 5 22 hm5C_associated_SNPs_111667 0 0 1 0 1 ATP1A1 chr1:116932329 5'GT 116932329 Upstream 26bp
chr19 42794462 42794462 1 + C A BRCA 42794461 + 42794441 42794481 41 CCCCCCACTGGACCCTGAGCCCCCAGGGCCCCCGGATCCTC CCCCCCACTGGACCCTGAGCCACCAGGGCCCCCGGATCCTC < 41bp 0.47970602241759 0.738947761301399 0.8748832 0.79915905 prediction 0.477895522602799 Functional Gain - CIC ENSG00000079432 CDS Human protein_coding chr19:42794461 chr19:42794462 synonymous SNV . 0 22 hm5C_associated_SNPs_111670 0 0 1 0 1 CIC chr19:42794385 3'AG 42794385 Downstream 78bp
chr12 50348034 50348034 1 + C T STAD 50348033 + 50348013 50348053 41 TTCGCCTCCACCGATGAGCGCCGCGGAGAGAACCCGGGCAC TTCGCCTCCACCGATGAGCGCTGCGGAGAGAACCCGGGCAC < 41bp 0.515019377120063 0.753958689179639 0.27544165 0.22240287 prediction 0.477878624119152 Functional Gain - AQP2 ENSG00000167580 CDS Human protein_coding chr12:50348033 chr12:50348034 nonsynonymous SNV 0.874 5 22 hm5C_associated_SNPs_111671 0 0 0 0 2 AQP2 chr12:50347938 3'AG 50347938 Downstream 97bp
chr12 50348034 50348034 1 + C T STAD 50348033 + 50348013 50348053 41 TTCGCCTCCACCGATGAGCGCCGCGGAGAGAACCCGGGCAC TTCGCCTCCACCGATGAGCGCTGCGGAGAGAACCCGGGCAC < 41bp 0.515019377120063 0.753958689179639 0.27544165 0.22240287 prediction 0.477878624119152 Functional Gain - AQP2 ENSG00000167580 CDS Human protein_coding chr12:50348033 chr12:50348034 nonsynonymous SNV 0.874 5 22 hm5C_associated_SNPs_111671 0 0 0 0 2 AQP2 chr12:50348102 5'GT 50348102 Upstream 69bp
chr12 109948241 109948241 1 + C G BRCA 109948240 + 109948220 109948260 41 GACTGCCGGCGGCGCTTCACCCCCGAGGACCACTGGCTGCG GACTGCCGGCGGCGCTTCACCGCCGAGGACCACTGGCTGCG < 41bp 0.626752874660777 0.865677907676534 0.17542529 0.40826458 prediction 0.477850066031515 Functional Gain - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109948240 chr12:109948241 nonsynonymous SNV 0.254 3 22 hm5C_associated_SNPs_111676 0 0 1 0 2 UBE3B chr12:109948149 3'AG 109948149 Downstream 93bp
chr12 109948241 109948241 1 + C G BRCA 109948240 + 109948220 109948260 41 GACTGCCGGCGGCGCTTCACCCCCGAGGACCACTGGCTGCG GACTGCCGGCGGCGCTTCACCGCCGAGGACCACTGGCTGCG < 41bp 0.626752874660777 0.865677907676534 0.17542529 0.40826458 prediction 0.477850066031515 Functional Gain - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109948240 chr12:109948241 nonsynonymous SNV 0.254 3 22 hm5C_associated_SNPs_111676 0 0 1 0 2 UBE3B chr12:109948263 5'GT 109948263 Upstream 23bp
chr1 116577822 116577822 1 + T C SKCM 116577820 + 116577800 116577840 41 AATTGCAGGTTTGTGTGCAGCTTGGTGTATTATGGCCTAAC AATTGCAGGTTTGTGTGCAGCTCGGTGTATTATGGCCTAAC < 41bp 0.461157550676769 0.738921607016048 0.27838075 0.3355608 prediction 0.477843214032096 Functional Gain - SLC22A15 ENSG00000163393 CDS Human protein_coding chr1:116577820 chr1:116577822 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_111677 0 0 1 0 1 SLC22A15 chr1:116577808 3'AG 116577808 Downstream 15bp
chr10 29578084 29578084 1 + A G rs2532753 29578081 + 29578061 29578101 41 CCTGAGCTGCCTGTCACCGACTAAGTGGAGCAGTGTTTCTT CCTGAGCTGCCTGTCACCGACTAGGTGGAGCAGTGTTTCTT < 41bp 0.501510418038374 0.740426474764088 0.17519996 0.28790164 prediction 0.477832113451428 Functional Gain - LYZL1 ENSG00000120563 CDS Human protein_coding chr10:29578081 chr10:29578084 nonsynonymous SNV 0.049 0 24 hm5C_associated_SNPs_111679 0 0 0 0 1 LYZL1 chr10:29578159 5'GT 29578159 Upstream 76bp
chr7 102036929 102036929 1 + C T SKCM 102036928 + 102036908 102036948 41 AGCCGCAGACGCTCGTCATCCCCAAGAATGCGGCGGAGGAG AGCCGCAGACGCTCGTCATCCTCAAGAATGCGGCGGAGGAG < 41bp 0.485199128349217 0.738916052488861 0.027673095 0.06284568 prediction 0.477832104977722 Functional Gain - PRKRIP1 ENSG00000128563 CDS Human protein_coding chr7:102036928 chr7:102036929 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_111680 0 0 1 0 1 PRKRIP1 chr7:102036984 5'GT 102036984 Upstream 56bp
chr2 98779410 98779410 1 + C T SKCM 98779409 + 98779389 98779429 41 AGAGGCTGGTGGCCGAGCCTCCCAAGCCCGACGTGGCCACT AGAGGCTGGTGGCCGAGCCTCTCAAGCCCGACGTGGCCACT < 41bp 0.508853892844735 0.747767214665627 0.088069886 0.20086181 prediction 0.477826643641784 Functional Gain - VWA3B ENSG00000168658 CDS Human protein_coding chr2:98779409 chr2:98779410 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_111681 0 0 0 0 2 VWA3B chr2:98779314 3'AG 98779314 Downstream 97bp
chr2 98779410 98779410 1 + C T SKCM 98779409 + 98779389 98779429 41 AGAGGCTGGTGGCCGAGCCTCCCAAGCCCGACGTGGCCACT AGAGGCTGGTGGCCGAGCCTCTCAAGCCCGACGTGGCCACT < 41bp 0.508853892844735 0.747767214665627 0.088069886 0.20086181 prediction 0.477826643641784 Functional Gain - VWA3B ENSG00000168658 CDS Human protein_coding chr2:98779409 chr2:98779410 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_111681 0 0 0 0 2 VWA3B chr2:98779439 5'GT 98779439 Upstream 30bp
chr1 197890699 197890699 1 + T G HNSC 197890697 + 197890677 197890717 41 GAGCGGCGGCCTGGCCCTGCCTTACTTCAACGGTACGGGCA GAGCGGCGGCCTGGCCCTGCCTGACTTCAACGGTACGGGCA < 41bp 0.388433856890707 0.738906958815764 0.053969026 0.121671796 prediction 0.477813917631527 Functional Gain - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197890697 chr1:197890699 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_111682 0 0 0 0 1 LHX9 chr1:197890789 5'GT 197890789 Upstream 91bp
chr9 18775810 18775810 1 + C A rs934472 18775806 + 18775786 18775826 41 TGCCGAAAGATGCTGAAAACCGGCCTCTCAACGGTTGTCAA TGCCGAAAGATGCTGAAAACCGGCATCTCAACGGTTGTCAA < 41bp 0.341412635724708 0.738906818303362 0.27621287 0.49219984 prediction 0.477813636606724 Functional Gain - ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18775806 chr9:18775810 nonsynonymous SNV 0.027 0 25 hm5C_associated_SNPs_111684 0 0 0 0 1 ADAMTSL1 chr9:18775894 5'GT 18775894 Upstream 85bp
chr20 43547656 43547656 1 + C G LUSC 43547652 + 43547632 43547672 41 AACCTCCCGGTGGATGTGGACGAGCAAGGCCTGCAGGACCT AACCTCCCGGTGGATGTGGACGAGGAAGGCCTGCAGGACCT < 41bp 0.609497197253431 0.84839649899497 0.5232564 0.86486363 prediction 0.477798603483077 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43547652 chr20:43547656 nonsynonymous SNV 0.637 1 25 hm5C_associated_SNPs_111685 0 0 1 0 1 PABPC1L chr20:43547686 5'GT 43547686 Upstream 31bp
chr12 58150727 58150727 1 + C A UCEC 58150726 + 58150706 58150746 41 CTCCAGGGGGAGCTCTTAAGCCCCTGCCGCTGCGACGGCTC CTCCAGGGGGAGCTCTTAAGCACCTGCCGCTGCGACGGCTC < 41bp 0.544994422524921 0.783892070635742 0.12739184 0.1422486 prediction 0.477795296221642 Functional Gain - MARCH9 ENSG00000139266 CDS Human protein_coding chr12:58150726 chr12:58150727 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111687 0 0 1 0 1 MARCH9 chr12:58150712 3'AG 58150712 Downstream 16bp
chr14 55243152 55243152 1 + C T rs1951437 55243151 + 55243131 55243171 41 GAACCTGTGGTTTGCCAACCCCGGGGGCAGCAATAGCATGC GAACCTGTGGTTTGCCAACCCTGGGGGCAGCAATAGCATGC < 41bp 0.515181135495833 0.7540751923786 0.91887546 0.41101974 prediction 0.477788113765533 Functional Gain - SAMD4A ENSG00000020577 CDS Human protein_coding chr14:55243151 chr14:55243152 synonymous SNV . 0 22 hm5C_associated_SNPs_111688 0 0 1 0 1 SAMD4A chr14:55243132 3'AG 55243132 Downstream 21bp
chr3 127327252 127327252 1 + C T UCEC 127327251 + 127327231 127327271 41 TATCAGAACTACCAGCGTATCCGAATCCAGGAGAGTCCAGG TATCAGAACTACCAGCGTATCTGAATCCAGGAGAGTCCAGG < 41bp 0.482810079644655 0.738891116955358 0.41254097 0.45466173 prediction 0.477782233910715 Functional Gain - MCM2 ENSG00000073111 CDS Human protein_coding chr3:127327251 chr3:127327252 stopgain 0.997 0 22 hm5C_associated_SNPs_111689 0 0 1 0 1 MCM2 chr3:127327225 3'AG 127327225 Downstream 28bp
chr17 40705294 40705294 1 + C T UCEC 40705293 + 40705273 40705313 41 CGGGAACGCGTGACTGAGGGCCGCGTGGACGTGCTGGGTGA CGGGAACGCGTGACTGAGGGCTGCGTGGACGTGCTGGGTGA < 41bp 0.512309888897321 0.751200913121384 0.44134793 0.36841422 prediction 0.477782048448127 Functional Gain - HSD17B1 ENSG00000108786 CDS Human protein_coding chr17:40705293 chr17:40705294 nonsynonymous SNV 0.026 5 22 hm5C_associated_SNPs_111690 0 0 0 2 1 HSD17B1 chr17:40705309 5'GT 40705309 Upstream 16bp
chr3 52819192 52819192 1 + C G OV 52819188 + 52819168 52819208 41 GGCTCAGAGATTGTGGTGGCCGGGCGCATTGCTGACAACAA GGCTCAGAGATTGTGGTGGCCGGGGGCATTGCTGACAACAA < 41bp 0.616217963648947 0.855105300676853 0.9003746 0.92310476 prediction 0.477774674055812 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52819188 chr3:52819192 nonsynonymous SNV 0.702 4 25 hm5C_associated_SNPs_111691 0 0 0 0 1 ITIH1 chr3:52819245 5'GT 52819245 Upstream 54bp
chr7 143085653 143085653 1 + C T COAD 143085652 + 143085632 143085672 41 CGCGCTCTAGGGCAGCTGTTCCACATCGCCTGCTTCACCTG CGCGCTCTAGGGCAGCTGTTCTACATCGCCTGCTTCACCTG < 41bp 0.475641827267296 0.738879822158237 0.24944857 0.8755176 prediction 0.477759644316474 Functional Gain - ZYX ENSG00000159840 CDS Human protein_coding chr7:143085652 chr7:143085653 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_111694 0 0 1 0 2 ZYX chr7:143085582 3'AG 143085582 Downstream 72bp
chr7 143085653 143085653 1 + C T COAD 143085652 + 143085632 143085672 41 CGCGCTCTAGGGCAGCTGTTCCACATCGCCTGCTTCACCTG CGCGCTCTAGGGCAGCTGTTCTACATCGCCTGCTTCACCTG < 41bp 0.475641827267296 0.738879822158237 0.24944857 0.8755176 prediction 0.477759644316474 Functional Gain - ZYX ENSG00000159840 CDS Human protein_coding chr7:143085652 chr7:143085653 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_111694 0 0 1 0 2 ZYX chr7:143085751 5'GT 143085751 Upstream 99bp
chr8 22161612 22161612 1 + C T SKCM 22161611 + 22161591 22161631 41 GGTTGGCAATATTGTTATCACCCGATATAACAATCGTACCT GGTTGGCAATATTGTTATCACTCGATATAACAATCGTACCT < 41bp 0.555225964077225 0.794096856395053 0.3016364 0.3698631 prediction 0.477741784635657 Functional Gain - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22161611 chr8:22161612 synonymous SNV . 0 22 hm5C_associated_SNPs_111695 0 0 0 0 1 PIWIL2 chr8:22161534 3'AG 22161534 Downstream 79bp
chr3 50608709 50608709 1 + T C rs143565256 50608707 + 50608687 50608727 41 TCTTTGAGAAGAGGGGTATCCCTGAGGCCCGGGAATCCAGT TCTTTGAGAAGAGGGGTATCCCCGAGGCCCGGGAATCCAGT < 41bp 0.453319545885222 0.738869204365119 0.83822477 0.89514303 prediction 0.477738408730238 Functional Gain - HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50608707 chr3:50608709 synonymous SNV . 0 23 hm5C_associated_SNPs_111697 0 0 0 0 1 HEMK1 chr3:50608763 5'GT 50608763 Upstream 55bp
chr2 27302011 27302011 1 + T A UCEC 27302007 + 27301987 27302027 41 TGCAGGGGCCGCCAGCTACCCTCCTCGAGGTTTCAGCCTCT TGCAGGGGCCGCCAGCTACCCTCCACGAGGTTTCAGCCTCT < 41bp 0.405088152481245 0.738868891143904 0.0709357 0.94128275 prediction 0.477737782287807 Functional Gain - EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302007 chr2:27302011 synonymous SNV . 0 25 hm5C_associated_SNPs_111698 0 0 0 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 93bp
chr12 113533150 113533150 1 + C G rs61758446 113533149 + 113533129 113533169 41 GGGCCCTGAGCACCCCAACCCCGGGAAGAAGTTCACCGCAA GGGCCCTGAGCACCCCAACCCGGGGAAGAAGTTCACCGCAA < 41bp 0.632467513596337 0.871334421469787 0.86918944 0.9425523 prediction 0.477733815746902 Functional Gain - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113533149 chr12:113533150 synonymous SNV . 0 22 hm5C_associated_SNPs_111700 0 0 0 0 2 DTX1 chr12:113533130 3'AG 113533130 Downstream 21bp
chr12 113533150 113533150 1 + C G rs61758446 113533149 + 113533129 113533169 41 GGGCCCTGAGCACCCCAACCCCGGGAAGAAGTTCACCGCAA GGGCCCTGAGCACCCCAACCCGGGGAAGAAGTTCACCGCAA < 41bp 0.632467513596337 0.871334421469787 0.86918944 0.9425523 prediction 0.477733815746902 Functional Gain - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113533149 chr12:113533150 synonymous SNV . 0 22 hm5C_associated_SNPs_111700 0 0 0 0 2 DTX1 chr12:113533219 5'GT 113533219 Upstream 70bp
chr16 30387185 30387185 1 + C T SKCM 30387184 + 30387164 30387204 41 GACAGTAGAGGGCGGAAGCTCCAGCGTCTTCTCCATGTTCG GACAGTAGAGGGCGGAAGCTCTAGCGTCTTCTCCATGTTCG < 41bp 0.505475707330341 0.744342140708899 0.34752458 0.05246064 prediction 0.477732866757115 Functional Gain - MYLPF ENSG00000180209 CDS Human protein_coding chr16:30387184 chr16:30387185 synonymous SNV . 0 22 hm5C_associated_SNPs_111701 0 0 0 0 2 MYLPF chr16:30387141 3'AG 30387141 Downstream 45bp
chr16 30387185 30387185 1 + C T SKCM 30387184 + 30387164 30387204 41 GACAGTAGAGGGCGGAAGCTCCAGCGTCTTCTCCATGTTCG GACAGTAGAGGGCGGAAGCTCTAGCGTCTTCTCCATGTTCG < 41bp 0.505475707330341 0.744342140708899 0.34752458 0.05246064 prediction 0.477732866757115 Functional Gain - MYLPF ENSG00000180209 CDS Human protein_coding chr16:30387184 chr16:30387185 synonymous SNV . 0 22 hm5C_associated_SNPs_111701 0 0 0 0 2 MYLPF chr16:30387233 5'GT 30387233 Upstream 49bp
chr5 154183836 154183836 1 + C T UCEC 154183835 + 154183815 154183855 41 GTGGGCTGGGTGATGGATTCCCGTGAGCACAGGCCCCGTAC GTGGGCTGGGTGATGGATTCCTGTGAGCACAGGCCCCGTAC < 41bp 0.491281183017248 0.738863851400788 0.3023276 0.109241515 prediction 0.477727702801576 Functional Gain - LARP1 ENSG00000155506 CDS Human protein_coding chr5:154183835 chr5:154183836 nonsynonymous SNV 0.896 4 22 hm5C_associated_SNPs_111702 0 0 1 0 2 LARP1 chr5:154183761 3'AG 154183761 Downstream 76bp
chr5 154183836 154183836 1 + C T UCEC 154183835 + 154183815 154183855 41 GTGGGCTGGGTGATGGATTCCCGTGAGCACAGGCCCCGTAC GTGGGCTGGGTGATGGATTCCTGTGAGCACAGGCCCCGTAC < 41bp 0.491281183017248 0.738863851400788 0.3023276 0.109241515 prediction 0.477727702801576 Functional Gain - LARP1 ENSG00000155506 CDS Human protein_coding chr5:154183835 chr5:154183836 nonsynonymous SNV 0.896 4 22 hm5C_associated_SNPs_111702 0 0 1 0 2 LARP1 chr5:154183867 5'GT 154183867 Upstream 32bp
chr20 31885338 31885338 1 + C T COAD 31885337 + 31885317 31885357 41 TTATGCTGTTGCAGCTGTGTCCCGTGATCGAGGCTTCCTTC TTATGCTGTTGCAGCTGTGTCTCGTGATCGAGGCTTCCTTC < 41bp 0.498841990519161 0.738857441501213 0.017833412 0.07336652 prediction 0.477714883002426 Functional Gain - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31885337 chr20:31885338 nonsynonymous SNV 0.520 3 22 hm5C_associated_SNPs_111703 0 0 0 0 1 BPIFB1 chr20:31885331 3'AG 31885331 Downstream 8bp
chr3 186505357 186505357 1 + T A OV 186505353 + 186505333 186505373 41 GGTCAGGGTCAAGTCGTGTTCTGATCACTACTGACTTGTTG GGTCAGGGTCAAGTCGTGTTCTGAACACTACTGACTTGTTG < 41bp 0.426824162479651 0.738850271245941 0.124138 0.14048806 prediction 0.477700542491882 Functional Gain - EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186505353 chr3:186505357 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_111704 0 0 1 1 2 EIF4A2 chr3:186505284 3'AG 186505284 Downstream 74bp
chr3 186505357 186505357 1 + T A OV 186505353 + 186505333 186505373 41 GGTCAGGGTCAAGTCGTGTTCTGATCACTACTGACTTGTTG GGTCAGGGTCAAGTCGTGTTCTGAACACTACTGACTTGTTG < 41bp 0.426824162479651 0.738850271245941 0.124138 0.14048806 prediction 0.477700542491882 Functional Gain - EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186505353 chr3:186505357 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_111704 0 0 1 1 2 EIF4A2 chr3:186505373 5'GT 186505373 Upstream 17bp
chr13 114292142 114292142 1 + A G STAD 114292139 + 114292119 114292159 41 CTTTCCCTTTTCAGAAATGGCTCAGGGAACTGTTGGAGGCG CTTTCCCTTTTCAGAAATGGCTCGGGGAACTGTTGGAGGCG < 41bp 0.496505662816936 0.738847129863074 0.13035989 0.24702284 prediction 0.477694259726149 Functional Gain - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114292139 chr13:114292142 nonsynonymous SNV 0.983 0 24 hm5C_associated_SNPs_111705 0 0 1 0 3 TFDP1 chr13:114292133 3'AG 114292133 Downstream 10bp
chr13 114292142 114292142 1 + A G STAD 114292139 + 114292119 114292159 41 CTTTCCCTTTTCAGAAATGGCTCAGGGAACTGTTGGAGGCG CTTTCCCTTTTCAGAAATGGCTCGGGGAACTGTTGGAGGCG < 41bp 0.496505662816936 0.738847129863074 0.13035989 0.24702284 prediction 0.477694259726149 Functional Gain - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114292139 chr13:114292142 nonsynonymous SNV 0.983 0 24 hm5C_associated_SNPs_111705 0 0 1 0 3 TFDP1 chr13:114292199 5'GT 114292199 Upstream 58bp
chr13 114292142 114292142 1 + A G STAD 114292139 + 114292119 114292159 41 CTTTCCCTTTTCAGAAATGGCTCAGGGAACTGTTGGAGGCG CTTTCCCTTTTCAGAAATGGCTCGGGGAACTGTTGGAGGCG < 41bp 0.496505662816936 0.738847129863074 0.13035989 0.24702284 prediction 0.477694259726149 Functional Gain - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114292139 chr13:114292142 nonsynonymous SNV 0.983 0 24 hm5C_associated_SNPs_111705 0 0 1 0 3 TFDP1 chr13:114292211 5'GT 114292211 Upstream 70bp
chr14 74009815 74009815 1 + T C STAD 74009813 + 74009793 74009833 41 GGGGGTGAGCTCTGCCTTTCCATGGCCTCTTTCCTGAAGGG GGGGGTGAGCTCTGCCTTTCCACGGCCTCTTTCCTGAAGGG < 41bp 0.517120087641528 0.755959563846639 0.44749945 0.5574327 prediction 0.477678952410221 Functional Gain - ACOT1 ENSG00000184227 CDS Human protein_coding chr14:74009813 chr14:74009815 nonsynonymous SNV 0.851 4 23 hm5C_associated_SNPs_111707 0 0 0 0 1 ACOT1 chr14:74009754 3'AG 74009754 Downstream 62bp
chr1 43166637 43166637 1 + C T SKCM 43166636 + 43166616 43166656 41 AGACAAAAGCAGCCGATCCACCAGCTGAGAATTCGTCCGCT AGACAAAAGCAGCCGATCCACTAGCTGAGAATTCGTCCGCT < 41bp 0.513355548114299 0.75218488586273 0.8458581 0.35802454 prediction 0.477658675496862 Functional Gain - YBX1 ENSG00000065978 CDS Human protein_coding chr1:43166636 chr1:43166637 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111710 0 0 1 0 1 YBX1 chr1:43166717 5'GT 43166717 Upstream 81bp
chr8 75927101 75927101 1 + C A BLCA 75927097 + 75927077 75927117 41 ACATGGGCGGCCCTGTTCTGCTTGCCCACCTAGTTTTGGAG ACATGGGCGGCCCTGTTCTGCTTGACCACCTAGTTTTGGAG < 41bp 0.319682635811421 0.738823480546654 0.020536453 0.020172 prediction 0.477646961093308 Functional Gain - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75927097 chr8:75927101 stopgain 1.000 1 25 hm5C_associated_SNPs_111711 0 0 0 0 2 CRISPLD1 chr8:75927047 3'AG 75927047 Downstream 55bp
chr8 75927101 75927101 1 + C A BLCA 75927097 + 75927077 75927117 41 ACATGGGCGGCCCTGTTCTGCTTGCCCACCTAGTTTTGGAG ACATGGGCGGCCCTGTTCTGCTTGACCACCTAGTTTTGGAG < 41bp 0.319682635811421 0.738823480546654 0.020536453 0.020172 prediction 0.477646961093308 Functional Gain - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75927097 chr8:75927101 stopgain 1.000 1 25 hm5C_associated_SNPs_111711 0 0 0 0 2 CRISPLD1 chr8:75927147 5'GT 75927147 Upstream 47bp
chr8 23112844 23112844 1 + C A STAD 23112840 + 23112820 23112860 41 GTGGCCCTGTCAGAGCTCAGCACCCTCTGTGCTAACTCCTG GTGGCCCTGTCAGAGCTCAGCACCATCTGTGCTAACTCCTG < 41bp 0.300251826130439 0.73881607928144 0.13576391 0.2658199 prediction 0.477632158562879 Functional Gain - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23112840 chr8:23112844 nonsynonymous SNV 0.575 1 25 hm5C_associated_SNPs_111713 0 0 1 0 1 CHMP7 chr8:23112760 3'AG 23112760 Downstream 85bp
chr19 4159722 4159722 1 + C T rs144868958 4159721 + 4159701 4159741 41 GGCTGATCCGGTGGACCTGTCCCCACGATGCAATCTCACCG GGCTGATCCGGTGGACCTGTCTCCACGATGCAATCTCACCG < 41bp 0.471437273999677 0.738815336151115 0.27044147 0.9393996 prediction 0.47763067230223 Functional Gain - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4159721 chr19:4159722 synonymous SNV . 0 22 hm5C_associated_SNPs_111714 0 0 0 0 2 CREB3L3 chr19:4159661 3'AG 4159661 Downstream 62bp
chr19 4159722 4159722 1 + C T rs144868958 4159721 + 4159701 4159741 41 GGCTGATCCGGTGGACCTGTCCCCACGATGCAATCTCACCG GGCTGATCCGGTGGACCTGTCTCCACGATGCAATCTCACCG < 41bp 0.471437273999677 0.738815336151115 0.27044147 0.9393996 prediction 0.47763067230223 Functional Gain - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4159721 chr19:4159722 synonymous SNV . 0 22 hm5C_associated_SNPs_111714 0 0 0 0 2 CREB3L3 chr19:4159779 5'GT 4159779 Upstream 58bp
chr5 176081963 176081963 1 + T C UCEC 176081961 + 176081941 176081981 41 ATCTACTTCAACTGCACTGACTTGAACCCCAGCCGGGAGCG ATCTACTTCAACTGCACTGACTCGAACCCCAGCCGGGAGCG < 41bp 0.568077206521321 0.806892494649593 0.20540923 0.455086 prediction 0.477630576256543 Functional Gain - TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176081961 chr5:176081963 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_111715 0 0 1 0 2 TSPAN17 chr5:176081896 3'AG 176081896 Downstream 68bp
chr5 176081963 176081963 1 + T C UCEC 176081961 + 176081941 176081981 41 ATCTACTTCAACTGCACTGACTTGAACCCCAGCCGGGAGCG ATCTACTTCAACTGCACTGACTCGAACCCCAGCCGGGAGCG < 41bp 0.568077206521321 0.806892494649593 0.20540923 0.455086 prediction 0.477630576256543 Functional Gain - TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176081961 chr5:176081963 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_111715 0 0 1 0 2 TSPAN17 chr5:176082021 5'GT 176082021 Upstream 59bp
chr10 73082809 73082809 1 + C T SKCM 73082808 + 73082788 73082828 41 GACCCTGAGGGCTCAGACATCCTGGTAAGGGCATGTTTCTC GACCCTGAGGGCTCAGACATCTTGGTAAGGGCATGTTTCTC < 41bp 0.50996903189272 0.748784282031629 0.34967735 0.14575344 prediction 0.477630500277816 Functional Gain - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73082808 chr10:73082809 synonymous SNV . 0 22 hm5C_associated_SNPs_111716 0 0 0 0 1 SLC29A3 chr10:73082811 5'GT 73082811 Upstream 3bp
chr9 130980992 130980992 1 + C T ESCA 130980991 + 130980971 130981011 41 TCGCCGGTGCCTATCAACCTCCGCGTCTACTCGCCGCACGG TCGCCGGTGCCTATCAACCTCTGCGTCTACTCGCCGCACGG < 41bp 0.487940965088539 0.738810647155013 0.3229645 0.17207497 prediction 0.477621294310026 Functional Gain - DNM1 ENSG00000106976 CDS Human protein_coding chr9:130980991 chr9:130980992 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_111717 0 0 1 0 1 DNM1 chr9:130981010 5'GT 130981010 Upstream 19bp
chr12 96354317 96354317 1 + C A rs138567370 96354316 + 96354296 96354336 41 TGTCTTTGATCTCGATTCCACCAGAAGGATTCTTCAACGTG TGTCTTTGATCTCGATTCCACAAGAAGGATTCTTCAACGTG < 41bp 0.485209276070646 0.738809724229955 0.0755547 0.26313815 prediction 0.47761944845991 Functional Gain - AMDHD1 ENSG00000139344 CDS Human protein_coding chr12:96354316 chr12:96354317 synonymous SNV . 0 22 hm5C_associated_SNPs_111719 0 0 0 0 1 AMDHD1 chr12:96354401 5'GT 96354401 Upstream 85bp
chr4 71889351 71889351 1 + T C UCEC 71889349 + 71889329 71889369 41 GGACAATTTATCAAGACTGGCATGACTGGATGAATAACCAA GGACAATTTATCAAGACTGGCACGACTGGATGAATAACCAA < 41bp 0.452685609541484 0.738809329196243 0.015292019 0.0077394545 prediction 0.477618658392486 Functional Gain - DCK ENSG00000156136 CDS Human protein_coding chr4:71889349 chr4:71889351 synonymous SNV . 0 23 hm5C_associated_SNPs_111720 0 0 1 0 2 DCK chr4:71889276 3'AG 71889276 Downstream 76bp
chr4 71889351 71889351 1 + T C UCEC 71889349 + 71889329 71889369 41 GGACAATTTATCAAGACTGGCATGACTGGATGAATAACCAA GGACAATTTATCAAGACTGGCACGACTGGATGAATAACCAA < 41bp 0.452685609541484 0.738809329196243 0.015292019 0.0077394545 prediction 0.477618658392486 Functional Gain - DCK ENSG00000156136 CDS Human protein_coding chr4:71889349 chr4:71889351 synonymous SNV . 0 23 hm5C_associated_SNPs_111720 0 0 1 0 2 DCK chr4:71889423 5'GT 71889423 Upstream 73bp
chr19 15164633 15164633 1 + C A KIRC 15164629 + 15164609 15164649 41 TGCCTTCGTGGTACTCATGGCTCACGGGAGGGAAGGCTTCC TGCCTTCGTGGTACTCATGGCTCAAGGGAGGGAAGGCTTCC < 41bp 0.307450443443721 0.738806191667744 0.08067024 0.3708648 prediction 0.477612383335488 Functional Gain - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15164629 chr19:15164633 nonsynonymous SNV 0.573 4 25 hm5C_associated_SNPs_111721 0 0 0 0 1 CASP14 chr19:15164544 3'AG 15164544 Downstream 90bp
chr12 123335396 123335396 1 + C T rs61739358 123335395 + 123335375 123335415 41 TCCACAGCATCCCCAGTTTCCCGCGGGCCTGGAGGTGACAG TCCACAGCATCCCCAGTTTCCTGCGGGCCTGGAGGTGACAG < 41bp 0.50975375186936 0.748558616957093 0.84302783 0.1931518 prediction 0.477609730175466 Functional Gain - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123335395 chr12:123335396 synonymous SNV . 0 22 hm5C_associated_SNPs_111723 0 0 1 0 2 HIP1R chr12:123335382 3'AG 123335382 Downstream 15bp
chr12 123335396 123335396 1 + C T rs61739358 123335395 + 123335375 123335415 41 TCCACAGCATCCCCAGTTTCCCGCGGGCCTGGAGGTGACAG TCCACAGCATCCCCAGTTTCCTGCGGGCCTGGAGGTGACAG < 41bp 0.50975375186936 0.748558616957093 0.84302783 0.1931518 prediction 0.477609730175466 Functional Gain - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123335395 chr12:123335396 synonymous SNV . 0 22 hm5C_associated_SNPs_111723 0 0 1 0 2 HIP1R chr12:123335458 5'GT 123335458 Upstream 63bp
chr2 219294122 219294122 1 + C T SKCM 219294121 + 219294101 219294141 41 AAGCTGATGGAGGTGATGAACCACGTGCTGGGCAAGCGCAG AAGCTGATGGAGGTGATGAACTACGTGCTGGGCAAGCGCAG < 41bp 0.488337207588928 0.73879890278528 0.2831543 0.27313393 prediction 0.477597805570561 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219294121 chr2:219294122 nonsynonymous SNV 0.938 1 22 hm5C_associated_SNPs_111726 0 0 1 0 1 VIL1 chr2:219294210 5'GT 219294210 Upstream 89bp
chr6 27806814 27806814 1 + C A ESCA 27806813 + 27806793 27806833 41 CGTCACCAAGTACACCAGTTCCAAGTGAGCCCGCCCACCGC CGTCACCAAGTACACCAGTTCAAAGTGAGCCCGCCCACCGC < 41bp 0.520223521440272 0.759021618173304 0.47267154 0.85239565 prediction 0.477596193466064 Functional Gain - HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806813 chr6:27806814 synonymous SNV . 0 22 hm5C_associated_SNPs_111727 0 0 1 0 2 HIST1H2BN chr6:27806816 5'GT 27806816 Upstream 3bp
chr6 27806814 27806814 1 + C A ESCA 27806813 + 27806793 27806833 41 CGTCACCAAGTACACCAGTTCCAAGTGAGCCCGCCCACCGC CGTCACCAAGTACACCAGTTCAAAGTGAGCCCGCCCACCGC < 41bp 0.520223521440272 0.759021618173304 0.47267154 0.85239565 prediction 0.477596193466064 Functional Gain - HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806813 chr6:27806814 synonymous SNV . 0 22 hm5C_associated_SNPs_111727 0 0 1 0 2 HIST1H2BN chr6:27806843 5'GT 27806843 Upstream 30bp
chr10 133930994 133930994 1 + C T COAD 133930993 + 133930973 133931013 41 CCAAGCGGACAAGATCAAGGCCGCAGAGATCCGCAGCGTGT CCAAGCGGACAAGATCAAGGCTGCAGAGATCCGCAGCGTGT < 41bp 0.489484219586948 0.738798035389954 0.42352644 0.43015796 prediction 0.477596070779909 Functional Gain - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133930993 chr10:133930994 synonymous SNV . 0 22 hm5C_associated_SNPs_111728 0 0 0 0 1 JAKMIP3 chr10:133931078 5'GT 133931078 Upstream 85bp
chr14 59112179 59112179 1 + A G KICH 59112176 + 59112156 59112196 41 CACTTCATGCTGTGGCTGTGCAGAGCCCAATGTTTCTCCTT CACTTCATGCTGTGGCTGTGCAGGGCCCAATGTTTCTCCTT < 41bp 0.512791599087274 0.751583472839338 0.3884068 0.70905566 prediction 0.477583747504128 Functional Gain - DACT1 ENSG00000165617 CDS Human protein_coding chr14:59112176 chr14:59112179 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_111729 0 0 0 0 1 DACT1 chr14:59112087 3'AG 59112087 Downstream 93bp
chr11 1955174 1955174 1 + C A PRAD 1955170 + 1955150 1955190 41 TCTGGCTGCAGGAGAAGCGCCGTGCAGAGAGAGCGGAGCAG TCTGGCTGCAGGAGAAGCGCCGTGAAGAGAGAGCGGAGCAG < 41bp 0.345924905147615 0.738788503391523 0.06923786 0.11357206 prediction 0.477577006783045 Functional Gain - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1955170 chr11:1955174 nonsynonymous SNV 0.499 5 25 hm5C_associated_SNPs_111731 0 0 0 0 2 TNNT3 chr11:1955161 3'AG 1955161 Downstream 14bp
chr11 1955174 1955174 1 + C A PRAD 1955170 + 1955150 1955190 41 TCTGGCTGCAGGAGAAGCGCCGTGCAGAGAGAGCGGAGCAG TCTGGCTGCAGGAGAAGCGCCGTGAAGAGAGAGCGGAGCAG < 41bp 0.345924905147615 0.738788503391523 0.06923786 0.11357206 prediction 0.477577006783045 Functional Gain - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1955170 chr11:1955174 nonsynonymous SNV 0.499 5 25 hm5C_associated_SNPs_111731 0 0 0 0 2 TNNT3 chr11:1955238 5'GT 1955238 Upstream 65bp
chr1 205028742 205028742 1 + C A KIRP 205028741 + 205028721 205028761 41 CTTTGCACCCAGCATCAAGGCCCGGTTCCCAGCAGAGACCT CTTTGCACCCAGCATCAAGGCACGGTTCCCAGCAGAGACCT < 41bp 0.472634245334886 0.738761463083978 0.060821682 0.072689295 prediction 0.477522926167956 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205028741 chr1:205028742 synonymous SNV . 0 22 hm5C_associated_SNPs_111736 0 0 0 0 2 CNTN2 chr1:205028711 3'AG 205028711 Downstream 32bp
chr1 205028742 205028742 1 + C A KIRP 205028741 + 205028721 205028761 41 CTTTGCACCCAGCATCAAGGCCCGGTTCCCAGCAGAGACCT CTTTGCACCCAGCATCAAGGCACGGTTCCCAGCAGAGACCT < 41bp 0.472634245334886 0.738761463083978 0.060821682 0.072689295 prediction 0.477522926167956 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205028741 chr1:205028742 synonymous SNV . 0 22 hm5C_associated_SNPs_111736 0 0 0 0 2 CNTN2 chr1:205028810 5'GT 205028810 Upstream 69bp
chr12 52312898 52312898 1 + C T PRAD 52312897 + 52312877 52312917 41 CTAACCGGCTGGCTGCAGACCCGGTGAGGCCTCTGCTGGGA CTAACCGGCTGGCTGCAGACCTGGTGAGGCCTCTGCTGGGA < 41bp 0.495790577433318 0.738760938682956 0.918553 0.69767416 prediction 0.477521877365913 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52312897 chr12:52312898 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_111737 0 0 0 0 1 ACVRL1 chr12:52312899 5'GT 52312899 Upstream 2bp
chr12 51207805 51207805 1 + C T SKCM 51207804 + 51207784 51207824 41 TGATTAAAGTTGCCATTGCCCCAAATGGAGCCTTACAGTTG TGATTAAAGTTGCCATTGCCCTAAATGGAGCCTTACAGTTG < 41bp 0.52522937870238 0.763989947551077 0.098841965 0.08168933 prediction 0.477521137697394 Functional Gain - ATF1 ENSG00000123268 CDS Human protein_coding chr12:51207804 chr12:51207805 stopgain 0.999 1 22 hm5C_associated_SNPs_111738 0 0 1 0 1 ATF1 chr12:51207793 3'AG 51207793 Downstream 13bp
chr21 42807913 42807913 1 + C T COAD 42807912 + 42807892 42807932 41 CCAGAGCTCGGGCAAGAGCTCCGTGTTGGAGGCACTGTCAG CCAGAGCTCGGGCAAGAGCTCTGTGTTGGAGGCACTGTCAG < 41bp 0.513301792233968 0.752059692764747 0.5355187 0.3022844 prediction 0.477515801061557 Functional Gain - MX1 ENSG00000157601 CDS Human protein_coding chr21:42807912 chr21:42807913 synonymous SNV . 0 22 hm5C_associated_SNPs_111739 0 0 0 0 1 MX1 chr21:42807956 5'GT 42807956 Upstream 44bp
chr19 57716786 57716786 1 + A G COAD 57716783 + 57716763 57716803 41 AGGGTGTCCTGTTCCCAAAGCTGAGCTGATCTGCCACCTAG AGGGTGTCCTGTTCCCAAAGCTGGGCTGATCTGCCACCTAG < 41bp 0.493099325434763 0.738754248194681 0.60110676 0.9320619 prediction 0.477508496389363 Functional Gain - ZNF264 ENSG00000083844 CDS Human protein_coding chr19:57716783 chr19:57716786 nonsynonymous SNV 0.008 3 24 hm5C_associated_SNPs_111740 0 0 1 0 1 ZNF264 chr19:57716860 5'GT 57716860 Upstream 75bp
chr6 42883813 42883813 1 + C A LUAD 42883812 + 42883792 42883832 41 TCCTTCCGAGTGGGCCATGGCCGGTACATGGCTGCTACTTC TCCTTCCGAGTGGGCCATGGCAGGTACATGGCTGCTACTTC < 41bp 0.528249089732829 0.767002482311303 0.87863326 0.9080384 prediction 0.477506785156949 Functional Gain - PTCRA ENSG00000171611 CDS Human protein_coding chr6:42883812 chr6:42883813 synonymous SNV . 0 22 hm5C_associated_SNPs_111741 0 0 0 0 1 PTCRA chr6:42883865 5'GT 42883865 Upstream 53bp
chr22 39357599 39357599 1 + C T COAD 39357598 + 39357578 39357618 41 AGACTGCGTATCTTCGCTGCCCGCATCTATGATTACGACCC AGACTGCGTATCTTCGCTGCCTGCATCTATGATTACGACCC < 41bp 0.556207960556194 0.794960211153214 0.02620107 0.044297874 prediction 0.477504501194039 Functional Gain - APOBEC3A;APOBEC3A_B ENSG00000128383 CDS Human protein_coding chr22:39357598 chr22:39357599 nonsynonymous SNV 0.787 1 22 hm5C_associated_SNPs_111742 0 0 0 0 1 APOBEC3A;APOBEC3A_B chr22:39357686 5'GT 39357686 Upstream 88bp
chr10 104356986 104356986 1 + C T STAD 104356985 + 104356965 104357005 41 GGATGACCTGAGCCGGCCCCCCGAGGATGACGAGGACAGCC GGATGACCTGAGCCGGCCCCCTGAGGATGACGAGGACAGCC < 41bp 0.526338991279771 0.765088842248255 0.78647053 0.3213725 prediction 0.477499701936968 Functional Gain - SUFU ENSG00000107882 CDS Human protein_coding chr10:104356985 chr10:104356986 synonymous SNV . 0 22 hm5C_associated_SNPs_111743 0 0 1 0 3 SUFU chr10:104356894 3'AG 104356894 Downstream 93bp
chr10 104356986 104356986 1 + C T STAD 104356985 + 104356965 104357005 41 GGATGACCTGAGCCGGCCCCCCGAGGATGACGAGGACAGCC GGATGACCTGAGCCGGCCCCCTGAGGATGACGAGGACAGCC < 41bp 0.526338991279771 0.765088842248255 0.78647053 0.3213725 prediction 0.477499701936968 Functional Gain - SUFU ENSG00000107882 CDS Human protein_coding chr10:104356985 chr10:104356986 synonymous SNV . 0 22 hm5C_associated_SNPs_111743 0 0 1 0 3 SUFU chr10:104356897 3'AG 104356897 Downstream 90bp
chr10 104356986 104356986 1 + C T STAD 104356985 + 104356965 104357005 41 GGATGACCTGAGCCGGCCCCCCGAGGATGACGAGGACAGCC GGATGACCTGAGCCGGCCCCCTGAGGATGACGAGGACAGCC < 41bp 0.526338991279771 0.765088842248255 0.78647053 0.3213725 prediction 0.477499701936968 Functional Gain - SUFU ENSG00000107882 CDS Human protein_coding chr10:104356985 chr10:104356986 synonymous SNV . 0 22 hm5C_associated_SNPs_111743 0 0 1 0 3 SUFU chr10:104357050 5'GT 104357050 Upstream 65bp
chr6 42821404 42821404 1 + C A LIHC 42821403 + 42821383 42821423 41 TTCTGGAAGCAAAGTTATATCCGCATCCTTAGGAACCGCAC TTCTGGAAGCAAAGTTATATCAGCATCCTTAGGAACCGCAC < 41bp 0.557039486166941 0.795781260443853 0.24936193 0.37448972 prediction 0.477483548553824 Functional Gain - BICRAL ENSG00000112624 CDS Human protein_coding chr6:42821403 chr6:42821404 synonymous SNV . 0 22 hm5C_associated_SNPs_111746 0 0 0 0 2 BICRAL chr6:42821376 3'AG 42821376 Downstream 29bp
chr6 42821404 42821404 1 + C A LIHC 42821403 + 42821383 42821423 41 TTCTGGAAGCAAAGTTATATCCGCATCCTTAGGAACCGCAC TTCTGGAAGCAAAGTTATATCAGCATCCTTAGGAACCGCAC < 41bp 0.557039486166941 0.795781260443853 0.24936193 0.37448972 prediction 0.477483548553824 Functional Gain - BICRAL ENSG00000112624 CDS Human protein_coding chr6:42821403 chr6:42821404 synonymous SNV . 0 22 hm5C_associated_SNPs_111746 0 0 0 0 2 BICRAL chr6:42821476 5'GT 42821476 Upstream 73bp
chr15 90794047 90794047 1 + C T SKCM 90794046 + 90794026 90794066 41 CCATTATGGCCACAAAAATTCCGAAGAAAGTCATAGCCCCA CCATTATGGCCACAAAAATTCTGAAGAAAGTCATAGCCCCA < 41bp 0.503350964461921 0.742087852797028 0.15743625 0.11906502 prediction 0.477473776670215 Functional Gain - TTLL13P ENSG00000213471;ENSG00000261147 CDS Human other chr15:90794046 chr15:90794047 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_111747 0 0 0 0 1 TTLL13P chr15:90794119 5'GT 90794119 Upstream 73bp
chr2 71299785 71299785 1 + A G KIRC 71299782 + 71299762 71299802 41 TTTCCCCAGGTGGAGTTGTGCTCATATCTGGAACAGGCTCC TTTCCCCAGGTGGAGTTGTGCTCGTATCTGGAACAGGCTCC < 41bp 0.501043924863613 0.73977717503045 0.23053357 0.29613137 prediction 0.477466500333674 Functional Gain - NAGK ENSG00000124357 CDS Human protein_coding chr2:71299782 chr2:71299785 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_111748 0 0 1 1 3 NAGK chr2:71299771 3'AG 71299771 Downstream 15bp
chr2 71299785 71299785 1 + A G KIRC 71299782 + 71299762 71299802 41 TTTCCCCAGGTGGAGTTGTGCTCATATCTGGAACAGGCTCC TTTCCCCAGGTGGAGTTGTGCTCGTATCTGGAACAGGCTCC < 41bp 0.501043924863613 0.73977717503045 0.23053357 0.29613137 prediction 0.477466500333674 Functional Gain - NAGK ENSG00000124357 CDS Human protein_coding chr2:71299782 chr2:71299785 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_111748 0 0 1 1 3 NAGK chr2:71299777 3'AG 71299777 Downstream 9bp
chr2 71299785 71299785 1 + A G KIRC 71299782 + 71299762 71299802 41 TTTCCCCAGGTGGAGTTGTGCTCATATCTGGAACAGGCTCC TTTCCCCAGGTGGAGTTGTGCTCGTATCTGGAACAGGCTCC < 41bp 0.501043924863613 0.73977717503045 0.23053357 0.29613137 prediction 0.477466500333674 Functional Gain - NAGK ENSG00000124357 CDS Human protein_coding chr2:71299782 chr2:71299785 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_111748 0 0 1 1 3 NAGK chr2:71299881 5'GT 71299881 Upstream 97bp
chr1 48699342 48699342 1 + T C UCEC 48699340 + 48699320 48699360 41 TCCACAGACGAGGTGGGCTGCGTGGACCCTGATGTCTGCCA TCCACAGACGAGGTGGGCTGCGCGGACCCTGATGTCTGCCA < 41bp 0.548591771233885 0.787320219286122 0.42346564 0.5512727 prediction 0.477456896104474 Functional Gain - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48699340 chr1:48699342 nonsynonymous SNV 0.833 4 23 hm5C_associated_SNPs_111749 0 0 1 1 2 SLC5A9 chr1:48699327 3'AG 48699327 Downstream 16bp
chr1 48699342 48699342 1 + T C UCEC 48699340 + 48699320 48699360 41 TCCACAGACGAGGTGGGCTGCGTGGACCCTGATGTCTGCCA TCCACAGACGAGGTGGGCTGCGCGGACCCTGATGTCTGCCA < 41bp 0.548591771233885 0.787320219286122 0.42346564 0.5512727 prediction 0.477456896104474 Functional Gain - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48699340 chr1:48699342 nonsynonymous SNV 0.833 4 23 hm5C_associated_SNPs_111749 0 0 1 1 2 SLC5A9 chr1:48699434 5'GT 48699434 Upstream 93bp
chr11 61252184 61252184 1 + C T COAD 61252183 + 61252163 61252203 41 CGGAAGGTCCATTTCGACACCCAGGAGCACGGGCCTCAGGC CGGAAGGTCCATTTCGACACCTAGGAGCACGGGCCTCAGGC < 41bp 0.521377713172352 0.760103075395773 0.4384399 0.14120007 prediction 0.477450724446843 Functional Gain - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61252183 chr11:61252184 stopgain 0.995 0 22 hm5C_associated_SNPs_111750 0 0 0 0 1 PPP1R32 chr11:61252160 3'AG 61252160 Downstream 25bp
chr6 36262065 36262065 1 + C A LGG 36262064 + 36262044 36262084 41 TGGGCAGCAGGACATCTGTCCCCGGGACTGCCCGGCCATCT TGGGCAGCAGGACATCTGTCCACGGGACTGCCCGGCCATCT < 41bp 0.56999855677767 0.808713425118465 0.7583705 0.83597016 prediction 0.477429736681591 Functional Gain - PNPLA1 ENSG00000180316 CDS Human protein_coding chr6:36262064 chr6:36262065 synonymous SNV . 0 22 hm5C_associated_SNPs_111753 0 0 0 0 1 PNPLA1 chr6:36261967 3'AG 36261967 Downstream 99bp
chr5 120021723 120021723 1 + C A LIHC 120021719 + 120021699 120021739 41 GATGACTGACAGCTCCAAAACGGACACGCTGAATAGTAGCT GATGACTGACAGCTCCAAAACGGAAACGCTGAATAGTAGCT < 41bp 0.338021969064988 0.738706135148928 0.19882846 0.3761971 prediction 0.477412270297856 Functional Gain - PRR16 ENSG00000184838 CDS Human protein_coding chr5:120021719 chr5:120021723 nonsynonymous SNV 0.967 4 25 hm5C_associated_SNPs_111754 0 0 0 0 1 PRR16 chr5:120021649 3'AG 120021649 Downstream 75bp
chr19 4288336 4288336 1 + C A UCEC 4288335 + 4288315 4288355 41 GCGGCTCAGTGAGACCAACCCCCAGGACTGCTCCTTGTCTC GCGGCTCAGTGAGACCAACCCACAGGACTGCTCCTTGTCTC < 41bp 0.569229756422866 0.807932064863995 0.31304458 0.21197578 prediction 0.477404616882258 Functional Gain - SHD ENSG00000105251 CDS Human protein_coding chr19:4288335 chr19:4288336 synonymous SNV . 0 22 hm5C_associated_SNPs_111755 0 0 0 0 2 SHD chr19:4288240 3'AG 4288240 Downstream 97bp
chr19 4288336 4288336 1 + C A UCEC 4288335 + 4288315 4288355 41 GCGGCTCAGTGAGACCAACCCCCAGGACTGCTCCTTGTCTC GCGGCTCAGTGAGACCAACCCACAGGACTGCTCCTTGTCTC < 41bp 0.569229756422866 0.807932064863995 0.31304458 0.21197578 prediction 0.477404616882258 Functional Gain - SHD ENSG00000105251 CDS Human protein_coding chr19:4288335 chr19:4288336 synonymous SNV . 0 22 hm5C_associated_SNPs_111755 0 0 0 0 2 SHD chr19:4288359 5'GT 4288359 Upstream 24bp
chr18 29038475 29038475 1 + C A LUAD 29038471 + 29038451 29038491 41 TCTCTGGAGTGGGAATCGATCAGCCGCCTTTTGGAATCTTT TCTCTGGAGTGGGAATCGATCAGCAGCCTTTTGGAATCTTT < 41bp 0.323994073259107 0.738697959376539 0.35617888 0.52396274 prediction 0.477395918753077 Functional Gain - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29038471 chr18:29038475 nonsynonymous SNV 0.897 3 25 hm5C_associated_SNPs_111757 0 0 0 0 2 DSG3 chr18:29038408 3'AG 29038408 Downstream 68bp
chr18 29038475 29038475 1 + C A LUAD 29038471 + 29038451 29038491 41 TCTCTGGAGTGGGAATCGATCAGCCGCCTTTTGGAATCTTT TCTCTGGAGTGGGAATCGATCAGCAGCCTTTTGGAATCTTT < 41bp 0.323994073259107 0.738697959376539 0.35617888 0.52396274 prediction 0.477395918753077 Functional Gain - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29038471 chr18:29038475 nonsynonymous SNV 0.897 3 25 hm5C_associated_SNPs_111757 0 0 0 0 2 DSG3 chr18:29038563 5'GT 29038563 Upstream 89bp
chr1 89990482 89990482 1 + C G rs546365414 89990478 + 89990458 89990498 41 TCCCGCTGAGCCCGCAGCCTCCGGCAGCCGGGAAAGTGCGG TCCCGCTGAGCCCGCAGCCTCCGGGAGCCGGGAAAGTGCGG < 41bp 0.569838626902137 0.808523907068334 0.86579704 0.9076203 prediction 0.477370560332395 Functional Gain - LRRC8B ENSG00000197147 UTR5 Human protein_coding chr1:89990478 chr1:89990482 . . 0 25 hm5C_associated_SNPs_111759 0 0 1 0 1 LRRC8B chr1:89990581 5'GT 89990581 Upstream 100bp
chr22 29695287 29695287 1 + T G LUSC 29695285 + 29695265 29695305 41 ACCAGTGTAAGGCCCCAAAGCCTGAAGGCTTCCTCCCGCCA ACCAGTGTAAGGCCCCAAAGCCGGAAGGCTTCCTCCCGCCA < 41bp 0.657656626553903 0.896335934570344 0.23404565 0.91513443 prediction 0.477358616032882 Functional Gain - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695285 chr22:29695287 synonymous SNV . 0 23 hm5C_associated_SNPs_111761 0 0 1 0 2 EWSR1 chr22:29695224 3'AG 29695224 Downstream 64bp
chr22 29695287 29695287 1 + T G LUSC 29695285 + 29695265 29695305 41 ACCAGTGTAAGGCCCCAAAGCCTGAAGGCTTCCTCCCGCCA ACCAGTGTAAGGCCCCAAAGCCGGAAGGCTTCCTCCCGCCA < 41bp 0.657656626553903 0.896335934570344 0.23404565 0.91513443 prediction 0.477358616032882 Functional Gain - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695285 chr22:29695287 synonymous SNV . 0 23 hm5C_associated_SNPs_111761 0 0 1 0 2 EWSR1 chr22:29695321 5'GT 29695321 Upstream 35bp
chr5 147693711 147693711 1 + C T LGG 147693710 + 147693690 147693730 41 CCAGTGGTGGCCATCCCCTGCCCCATCACATACCTACCAGT CCAGTGGTGGCCATCCCCTGCTCCATCACATACCTACCAGT < 41bp 0.462450924711313 0.738669225327958 0.13852441 0.91814923 prediction 0.477338450655915 Functional Gain - SPINK7 ENSG00000145879 CDS Human protein_coding chr5:147693710 chr5:147693711 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_111764 0 0 0 0 2 SPINK7 chr5:147693663 3'AG 147693663 Downstream 49bp
chr5 147693711 147693711 1 + C T LGG 147693710 + 147693690 147693730 41 CCAGTGGTGGCCATCCCCTGCCCCATCACATACCTACCAGT CCAGTGGTGGCCATCCCCTGCTCCATCACATACCTACCAGT < 41bp 0.462450924711313 0.738669225327958 0.13852441 0.91814923 prediction 0.477338450655915 Functional Gain - SPINK7 ENSG00000145879 CDS Human protein_coding chr5:147693710 chr5:147693711 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_111764 0 0 0 0 2 SPINK7 chr5:147693787 5'GT 147693787 Upstream 77bp
chr6 37250080 37250080 1 + C T COAD 37250079 + 37250059 37250099 41 GGGGCCCCCCCAATGACTGTCCGGGAGAAAACCCGCCTAGA GGGGCCCCCCCAATGACTGTCTGGGAGAAAACCCGCCTAGA < 41bp 0.519544376698594 0.758206825764014 0.91275036 0.9069902 prediction 0.477324898130839 Functional Gain - TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37250079 chr6:37250080 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111766 0 0 1 0 1 TBC1D22B chr6:37250140 5'GT 37250140 Upstream 61bp
chr3 183885712 183885712 1 + C T LUSC 183885711 + 183885691 183885731 41 GATGTGGTGGACTGGCTGTACCACAATGTGGAAGGCTTCAC GATGTGGTGGACTGGCTGTACTACAATGTGGAAGGCTTCAC < 41bp 0.562590105031555 0.801245349178799 0.07400727 0.9195281 prediction 0.477310488294487 Functional Gain - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183885711 chr3:183885712 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_111769 0 0 1 0 1 DVL3 chr3:183885686 3'AG 183885686 Downstream 27bp
chr5 137721783 137721783 1 + C T COAD 137721782 + 137721762 137721802 41 AGCATAGAGGGGAAAGATGGCCGGAGGAGGAAAAGTGCTTC AGCATAGAGGGGAAAGATGGCTGGAGGAGGAAAAGTGCTTC < 41bp 0.514892353980841 0.753545508263303 0.79813004 0.390692 prediction 0.477306308564924 Functional Gain - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137721782 chr5:137721783 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111771 0 0 1 0 2 KDM3B chr5:137721711 3'AG 137721711 Downstream 73bp
chr5 137721783 137721783 1 + C T COAD 137721782 + 137721762 137721802 41 AGCATAGAGGGGAAAGATGGCCGGAGGAGGAAAAGTGCTTC AGCATAGAGGGGAAAGATGGCTGGAGGAGGAAAAGTGCTTC < 41bp 0.514892353980841 0.753545508263303 0.79813004 0.390692 prediction 0.477306308564924 Functional Gain - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137721782 chr5:137721783 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111771 0 0 1 0 2 KDM3B chr5:137721879 5'GT 137721879 Upstream 97bp
chr10 119015131 119015131 1 + C G LUAD 119015130 + 119015110 119015150 41 TCAGAAGGGGACACCCCTAACCACGCTGCTGAAGGACCCGT TCAGAAGGGGACACCCCTAACGACGCTGCTGAAGGACCCGT < 41bp 0.419722755001249 0.738647750761219 0.19810769 0.42440253 prediction 0.477295501522438 Functional Gain - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119015130 chr10:119015131 synonymous SNV . 0 22 hm5C_associated_SNPs_111772 0 0 0 0 1 SLC18A2 chr10:119015168 5'GT 119015168 Upstream 38bp
chr1 156126240 156126240 1 + A G LUAD 156126237 + 156126217 156126257 41 GGGCACTTAGCTTCTTCCACCAGAAGGGCCTCCAGGATTTT GGGCACTTAGCTTCTTCCACCAGGAGGGCCTCCAGGATTTT < 41bp 0.523152530622925 0.761797309331588 0.5923019 0.9342375 prediction 0.477289557417326 Functional Gain - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156126237 chr1:156126240 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_111774 0 0 0 0 1 SEMA4A chr1:156126205 3'AG 156126205 Downstream 36bp
chrX 53454987 53454987 1 + C T UCEC 53454986 + 53454966 53455006 41 CTGAACAACCAGGTGGGAGACCGAAAGCGTCGGGAAGCAGC CTGAACAACCAGGTGGGAGACTGAAAGCGTCGGGAAGCAGC < 41bp 0.539690830526481 0.778323821668215 0.6461835 0.8739019 prediction 0.477265982283467 Functional Gain - RIBC1 ENSG00000158423 CDS Human protein_coding chrX:53454986 chrX:53454987 stopgain 0.483 0 22 hm5C_associated_SNPs_111776 0 0 0 0 2 RIBC1 chrX:53454951 3'AG 53454951 Downstream 37bp
chrX 53454987 53454987 1 + C T UCEC 53454986 + 53454966 53455006 41 CTGAACAACCAGGTGGGAGACCGAAAGCGTCGGGAAGCAGC CTGAACAACCAGGTGGGAGACTGAAAGCGTCGGGAAGCAGC < 41bp 0.539690830526481 0.778323821668215 0.6461835 0.8739019 prediction 0.477265982283467 Functional Gain - RIBC1 ENSG00000158423 CDS Human protein_coding chrX:53454986 chrX:53454987 stopgain 0.483 0 22 hm5C_associated_SNPs_111776 0 0 0 0 2 RIBC1 chrX:53455032 5'GT 53455032 Upstream 46bp
chr20 44639599 44639599 1 + C A rs55789927 44639595 + 44639575 44639615 41 TATCCCTTCGACGGGAAGGACGGGCTCCTGGCACACGCCTT TATCCCTTCGACGGGAAGGACGGGATCCTGGCACACGCCTT < 41bp 0.686556201368174 0.925185944000202 0.53082246 0.8637832 prediction 0.477259485264055 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44639595 chr20:44639599 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_111778 0 0 0 0 2 MMP9 chr20:44639561 3'AG 44639561 Downstream 39bp
chr20 44639599 44639599 1 + C A rs55789927 44639595 + 44639575 44639615 41 TATCCCTTCGACGGGAAGGACGGGCTCCTGGCACACGCCTT TATCCCTTCGACGGGAAGGACGGGATCCTGGCACACGCCTT < 41bp 0.686556201368174 0.925185944000202 0.53082246 0.8637832 prediction 0.477259485264055 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44639595 chr20:44639599 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_111778 0 0 0 0 2 MMP9 chr20:44639689 5'GT 44639689 Upstream 91bp
chr4 190873420 190873420 1 + C T rs148718668 190873419 + 190873399 190873439 41 ACTCGACAATGGTCTTTTTACCCTGGGAGCTCCACACAAAG ACTCGACAATGGTCTTTTTACTCTGGGAGCTCCACACAAAG < 41bp 0.481084193793902 0.738629076264058 0.06959811 0.05647537 prediction 0.477258152528117 Functional Gain - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190873419 chr4:190873420 nonsynonymous SNV 0.919 0 22 hm5C_associated_SNPs_111779 0 0 1 0 1 FRG1 chr4:190873442 5'GT 190873442 Upstream 23bp
chr6 43223505 43223505 1 + C T UCEC 43223504 + 43223484 43223524 41 ATCAAGGAGAAGTATGAGCACCGGATGCTGCTGAAGCACAT ATCAAGGAGAAGTATGAGCACTGGATGCTGCTGAAGCACAT < 41bp 0.533323171605585 0.771951894292154 0.21070272 0.1284324 prediction 0.47725744537314 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43223504 chr6:43223505 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111780 0 0 0 0 2 TTBK1 chr6:43223469 3'AG 43223469 Downstream 37bp
chr6 43223505 43223505 1 + C T UCEC 43223504 + 43223484 43223524 41 ATCAAGGAGAAGTATGAGCACCGGATGCTGCTGAAGCACAT ATCAAGGAGAAGTATGAGCACTGGATGCTGCTGAAGCACAT < 41bp 0.533323171605585 0.771951894292154 0.21070272 0.1284324 prediction 0.47725744537314 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43223504 chr6:43223505 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111780 0 0 0 0 2 TTBK1 chr6:43223594 5'GT 43223594 Upstream 90bp
chr3 195944785 195944785 1 + C T STAD 195944784 + 195944764 195944804 41 CGCCTGCTTCTCTCAGCCTCCCACAGCAGCCCAACTCCTGA CGCCTGCTTCTCTCAGCCTCCTACAGCAGCCCAACTCCTGA < 41bp 0.470424620258588 0.738623772529969 0.049115658 0.27665466 prediction 0.477247545059937 Functional Gain - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195944784 chr3:195944785 synonymous SNV . 0 22 hm5C_associated_SNPs_111781 0 0 1 0 2 SLC51A chr3:195944713 3'AG 195944713 Downstream 73bp
chr3 195944785 195944785 1 + C T STAD 195944784 + 195944764 195944804 41 CGCCTGCTTCTCTCAGCCTCCCACAGCAGCCCAACTCCTGA CGCCTGCTTCTCTCAGCCTCCTACAGCAGCCCAACTCCTGA < 41bp 0.470424620258588 0.738623772529969 0.049115658 0.27665466 prediction 0.477247545059937 Functional Gain - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195944784 chr3:195944785 synonymous SNV . 0 22 hm5C_associated_SNPs_111781 0 0 1 0 2 SLC51A chr3:195944807 5'GT 195944807 Upstream 23bp
chrX 144337222 144337222 1 + C A LUSC 144337221 + 144337201 144337241 41 CACCAAACAGGGACTTAGCCCCCGAACCGAGTTTGAAAAAG CACCAAACAGGGACTTAGCCCACGAACCGAGTTTGAAAAAG < 41bp 0.536475081412063 0.775094113011797 0.057475835 0.080792874 prediction 0.477238063199469 Functional Gain - SPANXN1 ENSG00000203923 CDS Human protein_coding chrX:144337221 chrX:144337222 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_111783 0 0 0 0 1 SPANXN1 chrX:144337191 3'AG 144337191 Downstream 32bp
chr7 139655321 139655321 1 + C T COAD 139655320 + 139655300 139655340 41 CTTTGGCACCCCGGTGGACTCCTGGCAGGCCCCTGAGGATC CTTTGGCACCCCGGTGGACTCTTGGCAGGCCCCTGAGGATC < 41bp 0.539949073968414 0.778561216695821 0.12621751 0.13105887 prediction 0.477224285454815 Functional Gain - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139655320 chr7:139655321 synonymous SNV . 0 22 hm5C_associated_SNPs_111784 0 0 0 0 2 TBXAS1 chr7:139655258 3'AG 139655258 Downstream 64bp
chr7 139655321 139655321 1 + C T COAD 139655320 + 139655300 139655340 41 CTTTGGCACCCCGGTGGACTCCTGGCAGGCCCCTGAGGATC CTTTGGCACCCCGGTGGACTCTTGGCAGGCCCCTGAGGATC < 41bp 0.539949073968414 0.778561216695821 0.12621751 0.13105887 prediction 0.477224285454815 Functional Gain - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139655320 chr7:139655321 synonymous SNV . 0 22 hm5C_associated_SNPs_111784 0 0 0 0 2 TBXAS1 chr7:139655406 5'GT 139655406 Upstream 86bp
chr2 14774126 14774126 1 + T C UCEC 14774124 + 14774104 14774144 41 ATGGGCAACCAACTGGACCGCATCACCCACCTCAACTACAG ATGGGCAACCAACTGGACCGCACCACCCACCTCAACTACAG < 41bp 0.564086772383441 0.802690261888428 0.042090386 0.055285245 prediction 0.477206979009975 Functional Gain - FAM84A ENSG00000162981 CDS Human protein_coding chr2:14774124 chr2:14774126 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_111786 0 0 0 0 1 FAM84A chr2:14774068 3'AG 14774068 Downstream 59bp
chr13 24823894 24823894 1 + C G rs7330736 24823893 + 24823873 24823913 41 GTGGGCTGCCCCAAAGGAGCCCGGAGAAGGCGCCCCATTTC GTGGGCTGCCCCAAAGGAGCCGGGAGAAGGCGCCCCATTTC < 41bp 0.583544165425462 0.822139551286584 0.4205153 0.88857394 prediction 0.477190771722243 Functional Gain - SPATA13 ENSG00000182957 CDS Human protein_coding chr13:24823893 chr13:24823894 nonsynonymous SNV 0.153 2 22 hm5C_associated_SNPs_111787 0 0 1 0 1 SPATA13 chr13:24823980 5'GT 24823980 Upstream 87bp
chr21 47532474 47532474 1 + C T UCEC 47532473 + 47532453 47532493 41 ATCGACCAGGACACCATCAACCGCATCATCAAGGTCATGGT ATCGACCAGGACACCATCAACTGCATCATCAAGGTCATGGT < 41bp 0.479631198653197 0.738593158705901 0.036798447 0.054703772 prediction 0.477186317411801 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47532473 chr21:47532474 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_111788 0 0 0 0 1 COL6A2 chr21:47532491 5'GT 47532491 Upstream 18bp
chr2 242148929 242148929 1 + A G COAD 242148926 + 242148906 242148946 41 CTTCCAGGAGAGGCCTCGGCCCCAGTTTGCCGCCTCAGCCC CTTCCAGGAGAGGCCTCGGCCCCGGTTTGCCGCCTCAGCCC < 41bp 0.526282828673977 0.764874271100189 0.1067777 0.11634916 prediction 0.477182884852425 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242148926 chr2:242148929 nonsynonymous SNV 0.959 0 24 hm5C_associated_SNPs_111790 0 0 0 0 1 ANO7 chr2:242148913 3'AG 242148913 Downstream 17bp
chr13 51921293 51921293 1 + A G LIHC 51921290 + 51921270 51921310 41 GAGATTCTCCTCCACAGACACACAGATCCTGCCTTTCACCT GAGATTCTCCTCCACAGACACACGGATCCTGCCTTTCACCT < 41bp 0.516534593469762 0.755122011669406 0.19333565 0.8767936 prediction 0.477174836399288 Functional Gain - SERPINE3 ENSG00000253309 CDS Human protein_coding chr13:51921290 chr13:51921293 nonsynonymous SNV 0.372 3 24 hm5C_associated_SNPs_111791 0 0 0 0 1 SERPINE3 chr13:51921370 5'GT 51921370 Upstream 78bp
chrX 128926807 128926807 1 + C A LUSC 128926803 + 128926783 128926823 41 CATGAGCTGCTGGAGCGCATCGGCCTGGAGGTTTGAGCTTG CATGAGCTGCTGGAGCGCATCGGCATGGAGGTTTGAGCTTG < 41bp 0.693176275763791 0.931762529292377 0.10045731 0.1712214 prediction 0.47717250705717 Functional Gain - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128926803 chrX:128926807 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_111792 0 0 0 0 1 SASH3 chrX:128926812 5'GT 128926812 Upstream 6bp
chr12 113346531 113346531 1 + C T SKCM 113346530 + 113346510 113346550 41 TGAAGTTTGAGGTCCAGGCTCCACGCTGGGGCAACCCCCGT TGAAGTTTGAGGTCCAGGCTCTACGCTGGGGCAACCCCCGT < 41bp 0.517145248213264 0.755728459463025 0.04353264 0.06613001 prediction 0.477166422499522 Functional Gain - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113346530 chr12:113346531 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_111793 0 0 0 0 1 OAS1 chr12:113346629 5'GT 113346629 Upstream 99bp
chr19 50384689 50384689 1 + C T rs570272653 50384688 + 50384668 50384708 41 CACTTCCACCGCGGGGGCACCCGCGCCCTGCTCCGCGTCCT CACTTCCACCGCGGGGGCACCTGCGCCCTGCTCCGCGTCCT < 41bp 0.531778548703863 0.770359519178299 0.59833145 0.6041424 prediction 0.477161940948871 Functional Gain - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50384688 chr19:50384689 nonsynonymous SNV 0.987 4 22 hm5C_associated_SNPs_111794 0 0 0 0 1 TBC1D17 chr19:50384732 5'GT 50384732 Upstream 44bp
chr13 100637337 100637337 1 + C A BLCA 100637336 + 100637316 100637356 41 TGCGACAAGTCCTACACGCACCCCAGCTCGCTGCGGAAGCA TGCGACAAGTCCTACACGCACACCAGCTCGCTGCGGAAGCA < 41bp 0.541585973051871 0.780158337649761 0.031505823 0.043532193 prediction 0.477144729195779 Functional Gain - ZIC2 ENSG00000043355 CDS Human protein_coding chr13:100637336 chr13:100637337 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111796 0 0 1 0 1 ZIC2 chr13:100637363 5'GT 100637363 Upstream 27bp
chr11 560977 560977 1 + T G rs542208050 560974 + 560954 560994 41 GGGGCCCGGGTGCGCCGCGGCGCTGGGGGCGGCAGGTTGCG GGGGCCCGGGTGCGCCGCGGCGCGGGGGGCGGCAGGTTGCG < 41bp 0.6570602431185 0.895626284705605 0.70125014 0.87959874 prediction 0.477132083174209 Functional Gain - RASSF7 ENSG00000099849 UTR5 Human protein_coding chr11:560974 chr11:560977 . . 0 24 hm5C_associated_SNPs_111798 0 0 0 0 1 RASSF7 chr11:561033 5'GT 561033 Upstream 57bp
chr20 60511884 60511884 1 + C G rs145794407 60511880 + 60511860 60511900 41 CGAGGGGAGCGGCTCCACCGCAGGCTCCGTCAGCTCCCTGA CGAGGGGAGCGGCTCCACCGCAGGGTCCGTCAGCTCCCTGA < 41bp 0.48222997525571 0.738565013602925 0.92015016 0.9403603 prediction 0.47713002720585 Functional Gain - CDH4 ENSG00000179242 CDS Human protein_coding chr20:60511880 chr20:60511884 synonymous SNV . 0 25 hm5C_associated_SNPs_111799 0 0 0 0 1 CDH4 chr20:60511795 3'AG 60511795 Downstream 90bp
chr2 44079961 44079961 1 + C A LUAD 44079957 + 44079937 44079977 41 GCACATGGTCCAGTATTTCACAGCCATCGGCTACCCCTGTC GCACATGGTCCAGTATTTCACAGCAATCGGCTACCCCTGTC < 41bp 0.695072101319432 0.933621391006641 0.26266885 0.38866723 prediction 0.477098579374417 Functional Gain - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44079957 chr2:44079961 synonymous SNV . 0 25 hm5C_associated_SNPs_111804 0 0 0 0 1 ABCG8 chr2:44080007 5'GT 44080007 Upstream 47bp
chr16 778024 778024 1 + T C rs1406814 778022 + 778002 778042 41 CCGCTGTGCTGACCACCCACCATCACTGGTGAGCGCCGGCG CCGCTGTGCTGACCACCCACCACCACTGGTGAGCGCCGGCG < 41bp 0.534843279389705 0.773383401348367 0.11614272 0.111840785 prediction 0.477080243917324 Functional Gain - HAGHL ENSG00000103253 CDS Human protein_coding chr16:778022 chr16:778024 synonymous SNV . 0 23 hm5C_associated_SNPs_111807 0 0 1 0 2 HAGHL chr16:777965 3'AG 777965 Downstream 60bp
chr16 778024 778024 1 + T C rs1406814 778022 + 778002 778042 41 CCGCTGTGCTGACCACCCACCATCACTGGTGAGCGCCGGCG CCGCTGTGCTGACCACCCACCACCACTGGTGAGCGCCGGCG < 41bp 0.534843279389705 0.773383401348367 0.11614272 0.111840785 prediction 0.477080243917324 Functional Gain - HAGHL ENSG00000103253 CDS Human protein_coding chr16:778022 chr16:778024 synonymous SNV . 0 23 hm5C_associated_SNPs_111807 0 0 1 0 2 HAGHL chr16:778029 5'GT 778029 Upstream 6bp
chr17 26822760 26822760 1 + C T UCEC 26822759 + 26822739 26822779 41 ATTGCCATCATCCTCTCCCTCCTGGTGGCCACCTTCACCGA ATTGCCATCATCCTCTCCCTCTTGGTGGCCACCTTCACCGA < 41bp 0.55450337947046 0.793043180905118 0.18986335 0.33546275 prediction 0.477079602869317 Functional Gain - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26822759 chr17:26822760 synonymous SNV . 0 22 hm5C_associated_SNPs_111808 0 0 0 0 2 SLC13A2 chr17:26822673 3'AG 26822673 Downstream 88bp
chr17 26822760 26822760 1 + C T UCEC 26822759 + 26822739 26822779 41 ATTGCCATCATCCTCTCCCTCCTGGTGGCCACCTTCACCGA ATTGCCATCATCCTCTCCCTCTTGGTGGCCACCTTCACCGA < 41bp 0.55450337947046 0.793043180905118 0.18986335 0.33546275 prediction 0.477079602869317 Functional Gain - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26822759 chr17:26822760 synonymous SNV . 0 22 hm5C_associated_SNPs_111808 0 0 0 0 2 SLC13A2 chr17:26822834 5'GT 26822834 Upstream 75bp
chr18 19761461 19761461 1 + A G rs61731977 19761458 + 19761438 19761478 41 TCCTGTGCCAACTGTCACACCACAACTACCACCTTATGGCG TCCTGTGCCAACTGTCACACCACGACTACCACCTTATGGCG < 41bp 0.531948971205477 0.770481594033082 0.09495041 0.1591129 prediction 0.47706524565521 Functional Gain - GATA6 ENSG00000141448 CDS Human protein_coding chr18:19761458 chr18:19761461 synonymous SNV . 0 24 hm5C_associated_SNPs_111813 0 0 1 0 2 GATA6 chr18:19761414 3'AG 19761414 Downstream 48bp
chr18 19761461 19761461 1 + A G rs61731977 19761458 + 19761438 19761478 41 TCCTGTGCCAACTGTCACACCACAACTACCACCTTATGGCG TCCTGTGCCAACTGTCACACCACGACTACCACCTTATGGCG < 41bp 0.531948971205477 0.770481594033082 0.09495041 0.1591129 prediction 0.47706524565521 Functional Gain - GATA6 ENSG00000141448 CDS Human protein_coding chr18:19761458 chr18:19761461 synonymous SNV . 0 24 hm5C_associated_SNPs_111813 0 0 1 0 2 GATA6 chr18:19761539 5'GT 19761539 Upstream 79bp
chr11 61252200 61252200 1 + A G rs146231065 61252197 + 61252177 61252217 41 CGACACCCAGGAGCACGGGCCTCAGGCCATCACGGGGCTGG CGACACCCAGGAGCACGGGCCTCGGGCCATCACGGGGCTGG < 41bp 0.52971981499651 0.768247241757375 0.3105284 0.44361758 prediction 0.47705485352173 Functional Gain - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61252197 chr11:61252200 nonsynonymous SNV 0.761 0 24 hm5C_associated_SNPs_111815 0 0 0 0 2 PPP1R32 chr11:61252160 3'AG 61252160 Downstream 41bp
chr11 61252200 61252200 1 + A G rs146231065 61252197 + 61252177 61252217 41 CGACACCCAGGAGCACGGGCCTCAGGCCATCACGGGGCTGG CGACACCCAGGAGCACGGGCCTCGGGCCATCACGGGGCTGG < 41bp 0.52971981499651 0.768247241757375 0.3105284 0.44361758 prediction 0.47705485352173 Functional Gain - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61252197 chr11:61252200 nonsynonymous SNV 0.761 0 24 hm5C_associated_SNPs_111815 0 0 0 0 2 PPP1R32 chr11:61252288 5'GT 61252288 Upstream 89bp
chr2 88482557 88482557 1 + C A UCEC 88482556 + 88482536 88482576 41 ATGGAGCAGTTTGAAAGGACCCAAAGTGTGAATCTGCCCAA ATGGAGCAGTTTGAAAGGACCAAAAGTGTGAATCTGCCCAA < 41bp 0.552866424139291 0.79137959439513 0.14895427 0.33451077 prediction 0.477026340511678 Functional Gain - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88482556 chr2:88482557 nonsynonymous SNV 0.985 0 22 hm5C_associated_SNPs_111817 0 0 0 0 2 THNSL2 chr2:88482467 3'AG 88482467 Downstream 91bp
chr2 88482557 88482557 1 + C A UCEC 88482556 + 88482536 88482576 41 ATGGAGCAGTTTGAAAGGACCCAAAGTGTGAATCTGCCCAA ATGGAGCAGTTTGAAAGGACCAAAAGTGTGAATCTGCCCAA < 41bp 0.552866424139291 0.79137959439513 0.14895427 0.33451077 prediction 0.477026340511678 Functional Gain - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88482556 chr2:88482557 nonsynonymous SNV 0.985 0 22 hm5C_associated_SNPs_111817 0 0 0 0 2 THNSL2 chr2:88482592 5'GT 88482592 Upstream 36bp
chr8 26441385 26441385 1 + C T SKCM 26441384 + 26441364 26441404 41 GCCCACTCCCGGATGGTGATCCCCGGAGGAATTGACGTCCA GCCCACTCCCGGATGGTGATCTCCGGAGGAATTGACGTCCA < 41bp 0.575714285259727 0.814224533518699 0.48052382 0.9029639 prediction 0.477020496517944 Functional Gain - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26441384 chr8:26441385 nonsynonymous SNV 0.549 5 22 hm5C_associated_SNPs_111818 0 0 1 0 1 DPYSL2 chr8:26441315 3'AG 26441315 Downstream 71bp
chr2 27282176 27282176 1 + C T SKCM 27282175 + 27282155 27282195 41 TCTCCACAGATGAAGAATTCCCCCAGCTTTCCTTTTCATGG TCTCCACAGATGAAGAATTCCTCCAGCTTTCCTTTTCATGG < 41bp 0.56881415476412 0.807323247772491 0.03717208 0.9239821 prediction 0.477018186016743 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27282175 chr2:27282176 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111821 0 0 1 4 1 AGBL5 chr2:27282272 5'GT 27282272 Upstream 97bp
chr1 27267969 27267969 1 + C A UCEC 27267965 + 27267945 27267985 41 CAGCTTATCACACAGACTTTCAGCCACCACAATCAGCTGGC CAGCTTATCACACAGACTTTCAGCAACCACAATCAGCTGGC < 41bp 0.321399226677424 0.738506770238708 0.20144415 0.2655141 prediction 0.477013540477416 Functional Gain - NUDC ENSG00000090273 CDS Human protein_coding chr1:27267965 chr1:27267969 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_111822 0 0 1 0 1 NUDC chr1:27267948 3'AG 27267948 Downstream 22bp
chr20 2845253 2845253 1 + C G COAD 2845252 + 2845232 2845272 41 TACAATCAGGATGACAATCACCAGGAATTGGGCAGCTTCCA TACAATCAGGATGACAATCACGAGGAATTGGGCAGCTTCCA < 41bp 0.417394630565421 0.738503680807413 0.41075593 0.8931821 prediction 0.477007361614827 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2845252 chr20:2845253 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_111823 0 0 0 1 2 VPS16 chr20:2845193 3'AG 2845193 Downstream 61bp
chr20 2845253 2845253 1 + C G COAD 2845252 + 2845232 2845272 41 TACAATCAGGATGACAATCACCAGGAATTGGGCAGCTTCCA TACAATCAGGATGACAATCACGAGGAATTGGGCAGCTTCCA < 41bp 0.417394630565421 0.738503680807413 0.41075593 0.8931821 prediction 0.477007361614827 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2845252 chr20:2845253 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_111823 0 0 0 1 2 VPS16 chr20:2845300 5'GT 2845300 Upstream 48bp
chr1 158913661 158913661 1 + C G LUAD 158913660 + 158913640 158913680 41 GTAGTAGGAAAAGGAGAATGCCACAATATCCCCTGTGAAAA GTAGTAGGAAAAGGAGAATGCGACAATATCCCCTGTGAAAA < 41bp 0.434778386671803 0.738501673905857 0.04328358 0.050940484 prediction 0.477003347811714 Functional Gain - PYHIN1 ENSG00000163564 CDS Human protein_coding chr1:158913660 chr1:158913661 nonsynonymous SNV 0.004 2 22 hm5C_associated_SNPs_111825 0 0 0 0 1 PYHIN1 chr1:158913580 3'AG 158913580 Downstream 82bp
chr6 43623341 43623341 1 + C G LIHC 43623340 + 43623320 43623360 41 CGCTTGGTGTCTGTCATTGACCAGATTGACAAGGCTGTGGC CGCTTGGTGTCTGTCATTGACGAGATTGACAAGGCTGTGGC < 41bp 0.629133618435382 0.867608618282292 0.357818 0.84488547 prediction 0.47694999969382 Functional Gain - RSPH9 ENSG00000172426 CDS Human protein_coding chr6:43623340 chr6:43623341 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_111836 0 0 0 0 2 RSPH9 chr6:43623299 3'AG 43623299 Downstream 43bp
chr6 43623341 43623341 1 + C G LIHC 43623340 + 43623320 43623360 41 CGCTTGGTGTCTGTCATTGACCAGATTGACAAGGCTGTGGC CGCTTGGTGTCTGTCATTGACGAGATTGACAAGGCTGTGGC < 41bp 0.629133618435382 0.867608618282292 0.357818 0.84488547 prediction 0.47694999969382 Functional Gain - RSPH9 ENSG00000172426 CDS Human protein_coding chr6:43623340 chr6:43623341 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_111836 0 0 0 0 2 RSPH9 chr6:43623428 5'GT 43623428 Upstream 88bp
chr14 24769329 24769329 1 + C A COAD 24769328 + 24769308 24769348 41 GCTCCAGATTCGCACCCGCACCTGAGCCCGGAAGCTCTGGG GCTCCAGATTCGCACCCGCACATGAGCCCGGAAGCTCTGGG < 41bp 0.546663652782233 0.785131125387433 0.24044904 0.31023282 prediction 0.4769349452104 Functional Gain - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24769328 chr14:24769329 nonsynonymous SNV 0.496 3 22 hm5C_associated_SNPs_111840 0 0 1 0 1 NOP9 chr14:24769407 5'GT 24769407 Upstream 79bp
chr12 51207804 51207804 1 + C T SKCM 51207803 + 51207783 51207823 41 TTGATTAAAGTTGCCATTGCCCCAAATGGAGCCTTACAGTT TTGATTAAAGTTGCCATTGCCTCAAATGGAGCCTTACAGTT < 41bp 0.550825409004192 0.789278557275973 0.18470865 0.8166809 prediction 0.476906296543563 Functional Gain - ATF1 ENSG00000123268 CDS Human protein_coding chr12:51207803 chr12:51207804 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_111843 0 0 1 0 1 ATF1 chr12:51207793 3'AG 51207793 Downstream 12bp
chr11 3418363 3418363 1 + C A rs186449668 3418362 + 3418342 3418382 41 TATAGTCACAGGTGCCCAGGCCGGAGTGCAGTGGCGTGATC TATAGTCACAGGTGCCCAGGCAGGAGTGCAGTGGCGTGATC < 41bp 0.528651035575155 0.767103103986048 0.6855201 0.8530335 prediction 0.476904136821786 Functional Gain - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3418362 chr11:3418363 . . 0 22 hm5C_associated_SNPs_111844 0 0 0 0 1 TSSC2 chr11:3418347 3'AG 3418347 Downstream 17bp
chr19 55420643 55420643 1 + C T SKCM 55420642 + 55420622 55420662 41 CCCTCTCGGTTCATCCTGGACCCGAAGTGATCTCGGGAGAG CCCTCTCGGTTCATCCTGGACTCGAAGTGATCTCGGGAGAG < 41bp 0.548363338075601 0.786812249582728 0.08208805 0.68912196 prediction 0.476897823014255 Functional Gain - NCR1 ENSG00000189430 CDS Human protein_coding chr19:55420642 chr19:55420643 nonsynonymous SNV 0.000 3 22 hm5C_associated_SNPs_111845 0 0 0 0 1 NCR1 chr19:55420604 3'AG 55420604 Downstream 40bp
chr19 36037642 36037642 1 + C T rs571165424 36037641 + 36037621 36037661 41 CCTTGTCATGTCCCGGAATGCCGGCAAGGGAGAGTACAAGA CCTTGTCATGTCCCGGAATGCTGGCAAGGGAGAGTACAAGA < 41bp 0.50208208097958 0.740515828358724 0.3479849 0.34810206 prediction 0.476867494758289 Functional Gain - TMEM147 ENSG00000105677 CDS Human protein_coding chr19:36037641 chr19:36037642 synonymous SNV . 0 22 hm5C_associated_SNPs_111850 0 0 1 0 2 TMEM147 chr19:36037574 3'AG 36037574 Downstream 69bp
chr19 36037642 36037642 1 + C T rs571165424 36037641 + 36037621 36037661 41 CCTTGTCATGTCCCGGAATGCCGGCAAGGGAGAGTACAAGA CCTTGTCATGTCCCGGAATGCTGGCAAGGGAGAGTACAAGA < 41bp 0.50208208097958 0.740515828358724 0.3479849 0.34810206 prediction 0.476867494758289 Functional Gain - TMEM147 ENSG00000105677 CDS Human protein_coding chr19:36037641 chr19:36037642 synonymous SNV . 0 22 hm5C_associated_SNPs_111850 0 0 1 0 2 TMEM147 chr19:36037710 5'GT 36037710 Upstream 69bp
chr17 7186847 7186847 1 + C T STAD 7186846 + 7186826 7186866 41 GGAGGCAGGGGCCTGAGGGACCCAGCTCCATCCCTCCAGGC GGAGGCAGGGGCCTGAGGGACTCAGCTCCATCCCTCCAGGC < 41bp 0.49598340027013 0.738428096966488 0.3431971 0.43489888 prediction 0.476856193932977 Functional Gain - SLC2A4 ENSG00000181856 CDS Human protein_coding chr17:7186846 chr17:7186847 nonsynonymous SNV 0.907 2 22 hm5C_associated_SNPs_111851 0 0 0 0 1 SLC2A4 chr17:7186792 3'AG 7186792 Downstream 56bp
chr19 51227325 51227325 1 + C G rs2303688 51227324 + 51227304 51227344 41 GCCCCAGCCCCTCTCCCACCCCTGAGGACATCGTCACTTAC GCCCCAGCCCCTCTCCCACCCGTGAGGACATCGTCACTTAC < 41bp 0.419477549332765 0.738427211992702 0.13025999 0.3819546 prediction 0.476854423985404 Functional Gain - CLEC11A ENSG00000105472 CDS Human protein_coding chr19:51227324 chr19:51227325 nonsynonymous SNV 0.838 1 22 hm5C_associated_SNPs_111852 0 0 0 0 1 CLEC11A chr19:51227348 5'GT 51227348 Upstream 24bp
chr19 4944160 4944160 1 + C A ESCA 4944159 + 4944139 4944179 41 CGCAGGTACTGCCCTGAGTGCCGGAATGATGCCAGCGAGGT CGCAGGTACTGCCCTGAGTGCAGGAATGATGCCAGCGAGGT < 41bp 0.545695248840469 0.784121382177998 0.23797071 0.2608538 prediction 0.476852266675057 Functional Gain - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4944159 chr19:4944160 . . 0 22 hm5C_associated_SNPs_111854 0 0 0 0 1 UHRF1 chr19:4944144 3'AG 4944144 Downstream 17bp
chr6 160468876 160468876 1 + C A UCEC 160468875 + 160468855 160468895 41 GGTACACCAGCTATGCCTGCCCGGAGGAGCCCCTGGAATGC GGTACACCAGCTATGCCTGCCAGGAGGAGCCCCTGGAATGC < 41bp 0.482433686075521 0.738419656895285 0.81788516 0.9013721 prediction 0.47683931379057 Functional Gain - IGF2R ENSG00000197081 CDS Human protein_coding chr6:160468875 chr6:160468876 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_111856 0 0 1 0 2 IGF2R chr6:160468824 3'AG 160468824 Downstream 53bp
chr6 160468876 160468876 1 + C A UCEC 160468875 + 160468855 160468895 41 GGTACACCAGCTATGCCTGCCCGGAGGAGCCCCTGGAATGC GGTACACCAGCTATGCCTGCCAGGAGGAGCCCCTGGAATGC < 41bp 0.482433686075521 0.738419656895285 0.81788516 0.9013721 prediction 0.47683931379057 Functional Gain - IGF2R ENSG00000197081 CDS Human protein_coding chr6:160468875 chr6:160468876 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_111856 0 0 1 0 2 IGF2R chr6:160468939 5'GT 160468939 Upstream 64bp
chr5 131411489 131411489 1 + C A CESC 131411488 + 131411468 131411508 41 TTTGAAAGTTTCAAAGAGAACCTGAAGGACTTTCTGCTTGT TTTGAAAGTTTCAAAGAGAACATGAAGGACTTTCTGCTTGT < 41bp 0.534134334860917 0.77255395764743 0.037617654 0.121138304 prediction 0.476839245573025 Functional Gain - CSF2 ENSG00000164400 CDS Human protein_coding chr5:131411488 chr5:131411489 nonsynonymous SNV 0.751 3 22 hm5C_associated_SNPs_111857 0 0 0 0 1 CSF2 chr5:131411438 3'AG 131411438 Downstream 52bp
chr1 16069582 16069582 1 + C A UCEC 16069581 + 16069561 16069601 41 GCCTCCCTGGAAACGGTGCACCTGGCAGGGCTGGCCCTGTT GCCTCCCTGGAAACGGTGCACATGGCAGGGCTGGCCCTGTT < 41bp 0.479829340135879 0.73841889854264 0.27005556 0.4305941 prediction 0.47683779708528 Functional Gain - TMEM82 ENSG00000162460 CDS Human protein_coding chr1:16069581 chr1:16069582 nonsynonymous SNV 0.293 2 22 hm5C_associated_SNPs_111858 0 0 0 0 1 TMEM82 chr1:16069515 3'AG 16069515 Downstream 68bp
chr1 3395002 3395002 1 + T C rs74050529 3395000 + 3394980 3395020 41 CTCCACAGCGAGGAGAGCTACATGGTCCAGGACTACGCCCA CTCCACAGCGAGGAGAGCTACACGGTCCAGGACTACGCCCA < 41bp 0.558698506160007 0.797116803726715 0.8847897 0.9064126 prediction 0.476836595133416 Functional Gain - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3395000 chr1:3395002 nonsynonymous SNV 0.170 0 23 hm5C_associated_SNPs_111860 0 0 1 0 1 ARHGEF16 chr1:3394988 3'AG 3394988 Downstream 15bp
chr7 37916529 37916529 1 + C T UCEC 37916528 + 37916508 37916548 41 AGTTCATGGATGCTTTCTTCCCCGATTTTAAAAAAATGAAA AGTTCATGGATGCTTTCTTCCTCGATTTTAAAAAAATGAAA < 41bp 0.547974877001151 0.786392580083838 0.068762004 0.36796784 prediction 0.476835406165375 Functional Gain - NME8 ENSG00000086288 CDS Human protein_coding chr7:37916528 chr7:37916529 nonsynonymous SNV 0.555 3 22 hm5C_associated_SNPs_111861 0 0 0 0 2 NME8 chr7:37916434 3'AG 37916434 Downstream 96bp
chr7 37916529 37916529 1 + C T UCEC 37916528 + 37916508 37916548 41 AGTTCATGGATGCTTTCTTCCCCGATTTTAAAAAAATGAAA AGTTCATGGATGCTTTCTTCCTCGATTTTAAAAAAATGAAA < 41bp 0.547974877001151 0.786392580083838 0.068762004 0.36796784 prediction 0.476835406165375 Functional Gain - NME8 ENSG00000086288 CDS Human protein_coding chr7:37916528 chr7:37916529 nonsynonymous SNV 0.555 3 22 hm5C_associated_SNPs_111861 0 0 0 0 2 NME8 chr7:37916609 5'GT 37916609 Upstream 81bp
chr3 37081737 37081737 1 + T C LIHC 37081735 + 37081715 37081755 41 TGTGTGAATCCTCAGTGGGCCTTGGCACAGCATCAAACCAA TGTGTGAATCCTCAGTGGGCCTCGGCACAGCATCAAACCAA < 41bp 0.509297289529297 0.747711996251596 0.14670339 0.14385957 prediction 0.476829413444599 Functional Gain - MLH1 ENSG00000076242 CDS Human protein_coding chr3:37081735 chr3:37081737 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_111862 0 0 1 0 1 MLH1 chr3:37081677 3'AG 37081677 Downstream 61bp
chr16 21716604 21716604 1 + C G rs115543159 21716600 + 21716580 21716620 41 CCACCTGAGGGGCTTCCAGGCTGGCGTCCAGAAGGTACAGC CCACCTGAGGGGCTTCCAGGCTGGGGTCCAGAAGGTACAGC < 41bp 0.607159439804199 0.845568219255557 0.57470644 0.8424054 prediction 0.476817558902717 Functional Gain - OTOA ENSG00000155719 CDS Human protein_coding chr16:21716600 chr16:21716604 synonymous SNV . 0 25 hm5C_associated_SNPs_111863 0 0 0 0 1 OTOA chr16:21716613 5'GT 21716613 Upstream 10bp
chr19 39397948 39397948 1 + C G rs528161401 39397947 + 39397927 39397967 41 CTGGAGCTGACCTTGACAAACCGGTGAGCCCCAACCTCGGG CTGGAGCTGACCTTGACAAACGGGTGAGCCCCAACCTCGGG < 41bp 0.637172306004323 0.875578138497859 0.89403635 0.92027843 prediction 0.476811664987072 Functional Gain - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39397947 chr19:39397948 nonsynonymous SNV 0.917 2 22 hm5C_associated_SNPs_111864 0 0 0 0 2 NFKBIB chr19:39397861 3'AG 39397861 Downstream 88bp
chr19 39397948 39397948 1 + C G rs528161401 39397947 + 39397927 39397967 41 CTGGAGCTGACCTTGACAAACCGGTGAGCCCCAACCTCGGG CTGGAGCTGACCTTGACAAACGGGTGAGCCCCAACCTCGGG < 41bp 0.637172306004323 0.875578138497859 0.89403635 0.92027843 prediction 0.476811664987072 Functional Gain - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39397947 chr19:39397948 nonsynonymous SNV 0.917 2 22 hm5C_associated_SNPs_111864 0 0 0 0 2 NFKBIB chr19:39397949 5'GT 39397949 Upstream 2bp
chr6 160198422 160198422 1 + C G LUSC 160198421 + 160198401 160198441 41 ACCTTTAGCACGGATAGTTTCCTGGTCCCAAGTGGGTGTGG ACCTTTAGCACGGATAGTTTCGTGGTCCCAAGTGGGTGTGG < 41bp 0.41356315977984 0.738393972031698 0.07309055 0.8816428 prediction 0.476787944063397 Functional Gain - ACAT2 ENSG00000120437 CDS Human protein_coding chr6:160198421 chr6:160198422 synonymous SNV . 0 22 hm5C_associated_SNPs_111868 0 0 1 0 2 ACAT2 chr6:160198334 3'AG 160198334 Downstream 89bp
chr6 160198422 160198422 1 + C G LUSC 160198421 + 160198401 160198441 41 ACCTTTAGCACGGATAGTTTCCTGGTCCCAAGTGGGTGTGG ACCTTTAGCACGGATAGTTTCGTGGTCCCAAGTGGGTGTGG < 41bp 0.41356315977984 0.738393972031698 0.07309055 0.8816428 prediction 0.476787944063397 Functional Gain - ACAT2 ENSG00000120437 CDS Human protein_coding chr6:160198421 chr6:160198422 synonymous SNV . 0 22 hm5C_associated_SNPs_111868 0 0 1 0 2 ACAT2 chr6:160198488 5'GT 160198488 Upstream 67bp
chr7 48146548 48146548 1 + T C UCEC 48146546 + 48146526 48146566 41 GCAGAGTTTGAGCAGATTGTCCTGGGGAAGCGGGTCATCCG GCAGAGTTTGAGCAGATTGTCCCGGGGAAGCGGGTCATCCG < 41bp 0.5665081889468 0.804877071370238 0.3159062 0.5169057 prediction 0.476737764846876 Functional Gain - UPP1 ENSG00000183696 CDS Human protein_coding chr7:48146546 chr7:48146548 nonsynonymous SNV 0.937 5 23 hm5C_associated_SNPs_111870 0 0 1 0 1 UPP1 chr7:48146470 3'AG 48146470 Downstream 79bp
chrX 68058526 68058526 1 + C T UCEC 68058525 + 68058505 68058545 41 CAAGCTGGACATCATCTGCCCCCGAGCAGAAGCAGGGCGGC CAAGCTGGACATCATCTGCCCTCGAGCAGAAGCAGGGCGGC < 41bp 0.55492397102668 0.79329215372062 0.16415128 0.55546206 prediction 0.47673636538788 Functional Gain - EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68058525 chrX:68058526 synonymous SNV . 0 22 hm5C_associated_SNPs_111871 0 0 0 0 1 EFNB1 chrX:68058460 3'AG 68058460 Downstream 67bp
chr2 211473198 211473198 1 + T C LUSC 211473196 + 211473176 211473216 41 TTTGAACCTAGCCTGGATTACATGGTCACCAAGATTCCCCG TTTGAACCTAGCCTGGATTACACGGTCACCAAGATTCCCCG < 41bp 0.459300172332969 0.738368142819518 0.05798474 0.08900106 prediction 0.476736285639036 Functional Gain - CPS1 ENSG00000021826 CDS Human protein_coding chr2:211473196 chr2:211473198 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_111872 0 0 1 0 1 CPS1 chr2:211473283 5'GT 211473283 Upstream 86bp
chr15 42137072 42137072 1 + C A COAD 42137071 + 42137051 42137091 41 TGGCCAACCTTTATGAGGACCCAGAGTGGTCTCAGAAGGAC TGGCCAACCTTTATGAGGACCAAGAGTGGTCTCAGAAGGAC < 41bp 0.477514421960095 0.738367632633214 0.65247333 0.63097847 prediction 0.476735265266428 Functional Gain - JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42137071 chr15:42137072 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_111873 0 0 1 0 1 JMJD7-PLA2G4B;PLA2G4B chr15:42137046 3'AG 42137046 Downstream 27bp
chrX 47030517 47030517 1 + C A BLCA 47030516 + 47030496 47030536 41 ACCGGCCCGCCAGGCTTCCCCCGAGACGGCGACTATCGGGA ACCGGCCCGCCAGGCTTCCCCAGAGACGGCGACTATCGGGA < 41bp 0.538992260841941 0.777354403230192 0.2491312 0.90781605 prediction 0.476724284776502 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030516 chrX:47030517 synonymous SNV . 0 22 hm5C_associated_SNPs_111874 0 0 0 0 2 RBM10 chrX:47030427 3'AG 47030427 Downstream 91bp
chrX 47030517 47030517 1 + C A BLCA 47030516 + 47030496 47030536 41 ACCGGCCCGCCAGGCTTCCCCCGAGACGGCGACTATCGGGA ACCGGCCCGCCAGGCTTCCCCAGAGACGGCGACTATCGGGA < 41bp 0.538992260841941 0.777354403230192 0.2491312 0.90781605 prediction 0.476724284776502 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030516 chrX:47030517 synonymous SNV . 0 22 hm5C_associated_SNPs_111874 0 0 0 0 2 RBM10 chrX:47030509 3'AG 47030509 Downstream 9bp
chr5 148626049 148626049 1 + C A STAD 148626048 + 148626028 148626068 41 TTTCTGTCTTTTGACAGTGCCCCGAGCCAGAAGGTTCTCGT TTTCTGTCTTTTGACAGTGCCACGAGCCAGAAGGTTCTCGT < 41bp 0.545996327683245 0.784347656502808 0.21276751 0.15242013 prediction 0.476702657639126 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148626048 chr5:148626049 synonymous SNV . 0 22 hm5C_associated_SNPs_111877 0 0 1 0 2 ABLIM3 chr5:148626045 3'AG 148626045 Downstream 5bp
chr5 148626049 148626049 1 + C A STAD 148626048 + 148626028 148626068 41 TTTCTGTCTTTTGACAGTGCCCCGAGCCAGAAGGTTCTCGT TTTCTGTCTTTTGACAGTGCCACGAGCCAGAAGGTTCTCGT < 41bp 0.545996327683245 0.784347656502808 0.21276751 0.15242013 prediction 0.476702657639126 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148626048 chr5:148626049 synonymous SNV . 0 22 hm5C_associated_SNPs_111877 0 0 1 0 2 ABLIM3 chr5:148626109 5'GT 148626109 Upstream 61bp
chr11 118184576 118184576 1 + C A rs2231447 118184572 + 118184552 118184592 41 TGTGACACGAGGAGCGGGTGCTGGCGGCAGGCAAAGGGGTA TGTGACACGAGGAGCGGGTGCTGGAGGCAGGCAAAGGGGTA < 41bp 0.688806782005976 0.927154016423996 0.87381095 0.9065088 prediction 0.47669446883604 Functional Gain - CD3E ENSG00000198851 CDS Human protein_coding chr11:118184572 chr11:118184576 synonymous SNV . 0 25 hm5C_associated_SNPs_111878 0 0 0 0 1 CD3E chr11:118184589 5'GT 118184589 Upstream 14bp
chr1 12061527 12061527 1 + C T LUAD 12061526 + 12061506 12061546 41 CTGGGCGTGGTGGATCGATCCCAGGCCGGGGACCGCATCTT CTGGGCGTGGTGGATCGATCCTAGGCCGGGGACCGCATCTT < 41bp 0.526598731349044 0.764939269219993 0.47898984 0.4215323 prediction 0.476681075741897 Functional Gain - MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061526 chr1:12061527 stopgain 0.943 1 22 hm5C_associated_SNPs_111880 0 0 1 0 2 MFN2 chr1:12061458 3'AG 12061458 Downstream 70bp
chr1 12061527 12061527 1 + C T LUAD 12061526 + 12061506 12061546 41 CTGGGCGTGGTGGATCGATCCCAGGCCGGGGACCGCATCTT CTGGGCGTGGTGGATCGATCCTAGGCCGGGGACCGCATCTT < 41bp 0.526598731349044 0.764939269219993 0.47898984 0.4215323 prediction 0.476681075741897 Functional Gain - MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061526 chr1:12061527 stopgain 0.943 1 22 hm5C_associated_SNPs_111880 0 0 1 0 2 MFN2 chr1:12061611 5'GT 12061611 Upstream 85bp
chr1 23235527 23235527 1 + C T SKCM 23235526 + 23235506 23235546 41 GTCTCCCAGGGCGGAAAGATCCCCATCCGCTGGACAGCCCC GTCTCCCAGGGCGGAAAGATCTCCATCCGCTGGACAGCCCC < 41bp 0.585921052051468 0.824248149306705 0.29601648 0.96872354 prediction 0.476654194510473 Functional Gain - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23235526 chr1:23235527 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_111883 0 0 0 0 1 EPHB2 chr1:23235515 3'AG 23235515 Downstream 13bp
chr3 69151015 69151015 1 + C A UCEC 69151014 + 69150994 69151034 41 CTGAGTCCCTTCAACATGATCCTGGGAGGAATCGTGGTGGT CTGAGTCCCTTCAACATGATCATGGGAGGAATCGTGGTGGT < 41bp 0.540857209019871 0.779184029689869 0.33671296 0.76619464 prediction 0.476653641339997 Functional Gain - ARL6IP5 ENSG00000144746 CDS Human protein_coding chr3:69151014 chr3:69151015 nonsynonymous SNV 0.980 2 22 hm5C_associated_SNPs_111884 0 0 1 0 1 ARL6IP5 chr3:69150990 3'AG 69150990 Downstream 26bp
chr8 11606565 11606565 1 + C A LUSC 11606561 + 11606541 11606581 41 TACCACAAGATGAACGGCATCAACCGGCCGCTCATCAAGCC TACCACAAGATGAACGGCATCAACAGGCCGCTCATCAAGCC < 41bp 0.315477732550143 0.738326441415268 0.30339855 0.23472214 prediction 0.476652882830536 Functional Gain - GATA4 ENSG00000136574 CDS Human protein_coding chr8:11606561 chr8:11606565 synonymous SNV . 0 25 hm5C_associated_SNPs_111885 0 0 0 0 1 GATA4 chr8:11606594 5'GT 11606594 Upstream 30bp
chr11 75439155 75439155 1 + C T COAD 75439154 + 75439134 75439174 41 TTCACGCTGTTACTGCGGAACCGAAAGGGCTTCGTCAGGCT TTCACGCTGTTACTGCGGAACTGAAAGGGCTTCGTCAGGCT < 41bp 0.530590471704954 0.768912878854659 0.12907627 0.15565658 prediction 0.476644814299411 Functional Gain - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75439154 chr11:75439155 stopgain 0.941 1 22 hm5C_associated_SNPs_111887 0 0 0 0 1 MOGAT2 chr11:75439189 5'GT 75439189 Upstream 35bp
chr1 230810845 230810845 1 + C A UCEC 230810844 + 230810824 230810864 41 AGTTACCCTCGCTTTTTAATCCTGGGAATCCCGATGCATTT AGTTACCCTCGCTTTTTAATCATGGGAATCCCGATGCATTT < 41bp 0.473551765535176 0.738311936111047 0.894768 0.90695727 prediction 0.476623872222093 Functional Gain - COG2 ENSG00000135775 CDS Human protein_coding chr1:230810844 chr1:230810845 nonsynonymous SNV 0.325 4 22 hm5C_associated_SNPs_111890 0 0 1 0 1 COG2 chr1:230810870 5'GT 230810870 Upstream 26bp
chr18 77797460 77797460 1 + C T SKCM 77797459 + 77797439 77797479 41 TGACAGACCTGCTGTGTACCCCTGAAGTGAGTCAGGAGCTG TGACAGACCTGCTGTGTACCCTTGAAGTGAGTCAGGAGCTG < 41bp 0.537909532817607 0.776217892672682 0.19735533 0.12020686 prediction 0.476616719710151 Functional Gain - RBFA ENSG00000101546;ENSG00000267127 CDS Human other chr18:77797459 chr18:77797460 nonsynonymous SNV 0.861 0 22 hm5C_associated_SNPs_111891 0 0 1 0 1 RBFA chr18:77797506 5'GT 77797506 Upstream 47bp
chr15 74560789 74560789 1 + T C LIHC 74560787 + 74560767 74560807 41 CGCTACATCGGCTGCAACCACATGGCTCTGGAGGTACCAGG CGCTACATCGGCTGCAACCACACGGCTCTGGAGGTACCAGG < 41bp 0.539443082346105 0.777744717310952 0.44197765 0.34280002 prediction 0.476603269929695 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74560787 chr15:74560789 nonsynonymous SNV 0.725 0 23 hm5C_associated_SNPs_111894 0 0 0 0 1 CCDC33 chr15:74560799 5'GT 74560799 Upstream 11bp
chr4 17625374 17625374 1 + C T LGG 17625373 + 17625353 17625393 41 CCTCAGGGCTCCTTGGCCTACCTGGAGCAGGCATCTGCCAA CCTCAGGGCTCCTTGGCCTACTTGGAGCAGGCATCTGCCAA < 41bp 0.498232479310036 0.738298998741981 0.36192644 0.37206036 prediction 0.476597997483963 Functional Gain - MED28 ENSG00000118579 CDS Human protein_coding chr4:17625373 chr4:17625374 synonymous SNV . 0 22 hm5C_associated_SNPs_111895 0 0 1 1 1 MED28 chr4:17625417 5'GT 17625417 Upstream 44bp
chr19 43860192 43860192 1 + T G rs12981714 43860189 + 43860169 43860209 41 CCAGGGATGCATGCCCCAGCCAGTTTGCAACCTGCTCAATG CCAGGGATGCATGCCCCAGCCAGGTTGCAACCTGCTCAATG < 41bp 0.331186653475832 0.738296727125947 0.37919423 0.9273617 prediction 0.476593454251894 Functional Gain - CD177 ENSG00000204936 CDS Human protein_coding chr19:43860189 chr19:43860192 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_111896 0 0 0 0 2 CD177 chr19:43860144 3'AG 43860144 Downstream 49bp
chr19 43860192 43860192 1 + T G rs12981714 43860189 + 43860169 43860209 41 CCAGGGATGCATGCCCCAGCCAGTTTGCAACCTGCTCAATG CCAGGGATGCATGCCCCAGCCAGGTTGCAACCTGCTCAATG < 41bp 0.331186653475832 0.738296727125947 0.37919423 0.9273617 prediction 0.476593454251894 Functional Gain - CD177 ENSG00000204936 CDS Human protein_coding chr19:43860189 chr19:43860192 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_111896 0 0 0 0 2 CD177 chr19:43860260 5'GT 43860260 Upstream 69bp
chr11 48149502 48149502 1 + C T SKCM 48149501 + 48149481 48149521 41 AGTGAGCCTCGCGCTGTCATCCCCGGACTCCGCTCCAGCAC AGTGAGCCTCGCGCTGTCATCTCCGGACTCCGCTCCAGCAC < 41bp 0.558730596100696 0.797013299752044 0.48841223 0.89811957 prediction 0.476565407302697 Functional Gain - PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48149501 chr11:48149502 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_111897 0 0 1 0 1 PTPRJ chr11:48149595 5'GT 48149595 Upstream 94bp
chr3 171965375 171965375 1 + C T SKCM 171965374 + 171965354 171965394 41 TGGTGGTCACACCCCAGTCTCCTGAGTGTTATCCCCCAAGC TGGTGGTCACACCCCAGTCTCTTGAGTGTTATCCCCCAAGC < 41bp 0.53889327565234 0.777166768091689 0.25687778 0.25893652 prediction 0.476546984878697 Functional Gain - FNDC3B ENSG00000075420 CDS Human protein_coding chr3:171965374 chr3:171965375 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_111900 0 0 1 0 1 FNDC3B chr3:171965323 3'AG 171965323 Downstream 53bp
chr1 15420702 15420702 1 + C G LUAD 15420698 + 15420678 15420718 41 TCGGACAGCCAGTGCAGCCCCACGCGGCAGAGCCTCAGCCT TCGGACAGCCAGTGCAGCCCCACGGGGCAGAGCCTCAGCCT < 41bp 0.457391136715151 0.738269599384462 0.3213388 0.774196 prediction 0.476539198768924 Functional Gain - KAZN ENSG00000189337 CDS Human protein_coding chr1:15420698 chr1:15420702 nonsynonymous SNV 0.622 0 25 hm5C_associated_SNPs_111901 0 0 0 0 1 KAZN chr1:15420676 3'AG 15420676 Downstream 27bp
chr7 142494265 142494265 1 - T C HNSC 142494268 - 142494248 142494288 41 CGGTCAGCCTAGAGCCTTCTCCAAAAAACAGCTCCCCGGTG CGGTCAGCCTAGAGCCTTCTCCAGAAAACAGCTCCCCGGTG < 41bp 0.50861067434786 0.746878671325081 0.07846984 0.4130206 prediction 0.476535993954443 Functional Gain - PRSS3P2;EPHB6 ENSG00000211765 CDS Human TR_J_gene chr7:142494268 chr7:142494265 unknown . 0 24 hm5C_associated_SNPs_111902 0 0 0 0 1 PRSS3P2;EPHB6 chr7:142494249 5'GT 142494249 Upstream 17bp
chr19 5772918 5772918 1 + C T HNSC 5772917 + 5772897 5772937 41 CGGCCATGTGTACCTCCCAGCCGCAGAACTGGACCACCATG CGGCCATGTGTACCTCCCAGCTGCAGAACTGGACCACCATG < 41bp 0.480949144726816 0.738256059347139 0.24579665 0.25710917 prediction 0.476512118694278 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5772917 chr19:5772918 nonsynonymous SNV 0.343 3 22 hm5C_associated_SNPs_111905 0 0 0 0 1 CATSPERD chr19:5772976 5'GT 5772976 Upstream 59bp
chr1 33945211 33945211 1 + C A UCEC 33945210 + 33945190 33945230 41 ACTATCTTGCCTAGGGAGGTCCAGACCTGGGTGCAGGCACG ACTATCTTGCCTAGGGAGGTCAAGACCTGGGTGCAGGCACG < 41bp 0.550882572643161 0.789127690310105 0.4555696 0.86618084 prediction 0.476490235333888 Functional Gain - ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33945210 chr1:33945211 nonsynonymous SNV 0.955 3 22 hm5C_associated_SNPs_111908 0 0 1 0 1 ZSCAN20 chr1:33945306 5'GT 33945306 Upstream 96bp
chr1 170695497 170695497 1 + C T STAD 170695496 + 170695476 170695516 41 CCATCGTACCTCGTCCTGCTCCGAGACCCACCGATTATCTC CCATCGTACCTCGTCCTGCTCTGAGACCCACCGATTATCTC < 41bp 0.492241898716776 0.7382446151024 0.7526363 0.29968747 prediction 0.476489230204799 Functional Gain - PRRX1 ENSG00000116132 CDS Human protein_coding chr1:170695496 chr1:170695497 nonsynonymous SNV 0.887 5 22 hm5C_associated_SNPs_111909 0 0 0 0 1 PRRX1 chr1:170695542 5'GT 170695542 Upstream 46bp
chr3 12856856 12856856 1 + A G rs2305398 12856853 + 12856833 12856873 41 CATCGTGCTGCTGCGGCAAACACAGCCCCCGAAGGGATGGC CATCGTGCTGCTGCGGCAAACACGGCCCCCGAAGGGATGGC < 41bp 0.525919435237077 0.764154848333134 0.10343933 0.37268388 prediction 0.476470826192116 Functional Gain - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12856853 chr3:12856856 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_111911 0 0 0 0 1 CAND2 chr3:12856932 5'GT 12856932 Upstream 77bp
chr8 38065274 38065274 1 + C T UCEC 38065273 + 38065253 38065293 41 GGGGGCAGGTTCCAGGATATCCGCCTTCACAGGTGAGTTGT GGGGGCAGGTTCCAGGATATCTGCCTTCACAGGTGAGTTGT < 41bp 0.509036552776834 0.747267871594026 0.100498736 0.15645424 prediction 0.476462637634384 Functional Gain - BAG4 ENSG00000156735 CDS Human protein_coding chr8:38065273 chr8:38065274 nonsynonymous SNV 0.955 2 22 hm5C_associated_SNPs_111912 0 0 1 0 1 BAG4 chr8:38065284 5'GT 38065284 Upstream 11bp
chr19 55420801 55420801 1 + C A rs3765013 55420800 + 55420780 55420820 41 GGCCCTGTGACCACAGCCCACCGAGGGACATACCGATGTTT GGCCCTGTGACCACAGCCCACAGAGGGACATACCGATGTTT < 41bp 0.462984670249403 0.738230087207047 0.3139543 0.8331559 prediction 0.476460174414095 Functional Gain - NCR1 ENSG00000189430 CDS Human protein_coding chr19:55420800 chr19:55420801 synonymous SNV . 0 22 hm5C_associated_SNPs_111913 0 0 0 0 1 NCR1 chr19:55420882 5'GT 55420882 Upstream 82bp
chr5 79355632 79355632 1 + A G COAD 79355629 + 79355609 79355649 41 TGTGACTCCAACCCATGTTTCCGAGGTGTCCAATGTACCGA TGTGACTCCAACCCATGTTTCCGGGGTGTCCAATGTACCGA < 41bp 0.544292649280204 0.782522607397374 0.9198433 0.9399187 prediction 0.47645991623434 Functional Gain - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79355629 chr5:79355632 synonymous SNV . 0 24 hm5C_associated_SNPs_111914 0 0 0 0 1 THBS4 chr5:79355728 5'GT 79355728 Upstream 97bp
chr22 26114346 26114346 1 + C A LUAD 26114345 + 26114325 26114365 41 TGGAGAGGAGAGGGAGAGTCCCGGGTAAGTCTAAGGCAGCC TGGAGAGGAGAGGGAGAGTCCAGGGTAAGTCTAAGGCAGCC < 41bp 0.526033826560367 0.764238414802233 0.8854053 0.8805258 prediction 0.476409176483732 Functional Gain - GRK3 ENSG00000100077 CDS Human protein_coding chr22:26114345 chr22:26114346 synonymous SNV . 0 22 hm5C_associated_SNPs_111918 0 0 1 0 1 GRK3 chr22:26114348 5'GT 26114348 Upstream 3bp
chr4 166300638 166300638 1 + C A COAD 166300637 + 166300617 166300657 41 AGCTTCGAGGGCCGGGAGCTCCTGGTCATCGAGCTGTCCGA AGCTTCGAGGGCCGGGAGCTCATGGTCATCGAGCTGTCCGA < 41bp 0.529499558499717 0.767696961823084 0.17431033 0.25249022 prediction 0.476394806646733 Functional Gain - CPE ENSG00000109472 CDS Human protein_coding chr4:166300637 chr4:166300638 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_111921 0 0 1 0 1 CPE chr4:166300680 5'GT 166300680 Upstream 43bp
chrX 49099406 49099406 1 + C A PRAD 49099402 + 49099382 49099422 41 GGAGCCAAATTCGGGACCAGCTGGCACTGCCTTGGGTCCCG GGAGCCAAATTCGGGACCAGCTGGAACTGCCTTGGGTCCCG < 41bp 0.69625328615009 0.934445721747162 0.48219553 0.93006474 prediction 0.476384871194144 Functional Gain - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49099402 chrX:49099406 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_111924 0 0 0 0 2 CCDC22 chrX:49099352 3'AG 49099352 Downstream 55bp
chrX 49099406 49099406 1 + C A PRAD 49099402 + 49099382 49099422 41 GGAGCCAAATTCGGGACCAGCTGGCACTGCCTTGGGTCCCG GGAGCCAAATTCGGGACCAGCTGGAACTGCCTTGGGTCCCG < 41bp 0.69625328615009 0.934445721747162 0.48219553 0.93006474 prediction 0.476384871194144 Functional Gain - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49099402 chrX:49099406 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_111924 0 0 0 0 2 CCDC22 chrX:49099458 5'GT 49099458 Upstream 53bp
chr15 48548078 48548078 1 + C A LUSC 48548077 + 48548057 48548097 41 AGACAATGCTCTGGAATTAACCACAGTGGAAGACCACGTAA AGACAATGCTCTGGAATTAACAACAGTGGAAGACCACGTAA < 41bp 0.52891961728784 0.767110846529737 0.2509656 0.36373663 prediction 0.476382458483793 Functional Gain - SLC12A1 ENSG00000074803 CDS Human protein_coding chr15:48548077 chr15:48548078 synonymous SNV . 0 22 hm5C_associated_SNPs_111925 0 0 0 0 2 SLC12A1 chr15:48548008 3'AG 48548008 Downstream 71bp
chr15 48548078 48548078 1 + C A LUSC 48548077 + 48548057 48548097 41 AGACAATGCTCTGGAATTAACCACAGTGGAAGACCACGTAA AGACAATGCTCTGGAATTAACAACAGTGGAAGACCACGTAA < 41bp 0.52891961728784 0.767110846529737 0.2509656 0.36373663 prediction 0.476382458483793 Functional Gain - SLC12A1 ENSG00000074803 CDS Human protein_coding chr15:48548077 chr15:48548078 synonymous SNV . 0 22 hm5C_associated_SNPs_111925 0 0 0 0 2 SLC12A1 chr15:48548107 5'GT 48548107 Upstream 30bp
chr5 147550524 147550524 1 + T C rs187681871 147550522 + 147550502 147550542 41 CTAGACACTGGTGGCCACCACGTGGAATTATTAAGGTAATG CTAGACACTGGTGGCCACCACGCGGAATTATTAAGGTAATG < 41bp 0.482777230810234 0.73818688630903 0.071819514 0.18307048 prediction 0.476373772618061 Functional Gain - SPINK14 ENSG00000196800 CDS Human protein_coding chr5:147550522 chr5:147550524 synonymous SNV . 0 23 hm5C_associated_SNPs_111926 0 0 0 0 2 SPINK14 chr5:147550493 3'AG 147550493 Downstream 32bp
chr5 147550524 147550524 1 + T C rs187681871 147550522 + 147550502 147550542 41 CTAGACACTGGTGGCCACCACGTGGAATTATTAAGGTAATG CTAGACACTGGTGGCCACCACGCGGAATTATTAAGGTAATG < 41bp 0.482777230810234 0.73818688630903 0.071819514 0.18307048 prediction 0.476373772618061 Functional Gain - SPINK14 ENSG00000196800 CDS Human protein_coding chr5:147550522 chr5:147550524 synonymous SNV . 0 23 hm5C_associated_SNPs_111926 0 0 0 0 2 SPINK14 chr5:147550536 5'GT 147550536 Upstream 13bp
chr2 162227718 162227718 1 + C G LIHC 162227714 + 162227694 162227734 41 TTGTTGGTTGGTATCACAGTCACCCTGGCTTTGGTTGTTGG TTGTTGGTTGGTATCACAGTCACCGTGGCTTTGGTTGTTGG < 41bp 0.469511815925476 0.738175037811404 0.042914867 0.118591815 prediction 0.476350075622809 Functional Gain - PSMD14 ENSG00000115233 CDS Human protein_coding chr2:162227714 chr2:162227718 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_111929 0 0 1 0 1 PSMD14 chr2:162227683 3'AG 162227683 Downstream 36bp
chr18 61232760 61232760 1 + T C LUSC 61232758 + 61232738 61232778 41 GAGGAGGTGAAGGCACAGATCCTGGAAATGAGGTACACCAA GAGGAGGTGAAGGCACAGATCCCGGAAATGAGGTACACCAA < 41bp 0.577845712939638 0.816007864081772 0.29918164 0.77561116 prediction 0.476324302284267 Functional Gain - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61232758 chr18:61232760 nonsynonymous SNV 0.988 5 23 hm5C_associated_SNPs_111933 0 0 0 0 2 SERPINB12 chr18:61232678 3'AG 61232678 Downstream 83bp
chr18 61232760 61232760 1 + T C LUSC 61232758 + 61232738 61232778 41 GAGGAGGTGAAGGCACAGATCCTGGAAATGAGGTACACCAA GAGGAGGTGAAGGCACAGATCCCGGAAATGAGGTACACCAA < 41bp 0.577845712939638 0.816007864081772 0.29918164 0.77561116 prediction 0.476324302284267 Functional Gain - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61232758 chr18:61232760 nonsynonymous SNV 0.988 5 23 hm5C_associated_SNPs_111933 0 0 0 0 2 SERPINB12 chr18:61232845 5'GT 61232845 Upstream 86bp
chr1 10683172 10683172 1 + C T SKCM 10683171 + 10683151 10683191 41 GAGCTGAGTGGCAGCGTGGCCCAGACAGGTAAAGATTAATG GAGCTGAGTGGCAGCGTGGCCTAGACAGGTAAAGATTAATG < 41bp 0.487029195978265 0.738153259801883 0.019635588 0.042792827 prediction 0.476306519603767 Functional Gain - PEX14 ENSG00000142655 CDS Human protein_coding chr1:10683171 chr1:10683172 stopgain 1.000 1 22 hm5C_associated_SNPs_111936 0 0 1 0 2 PEX14 chr1:10683076 3'AG 10683076 Downstream 97bp
chr1 10683172 10683172 1 + C T SKCM 10683171 + 10683151 10683191 41 GAGCTGAGTGGCAGCGTGGCCCAGACAGGTAAAGATTAATG GAGCTGAGTGGCAGCGTGGCCTAGACAGGTAAAGATTAATG < 41bp 0.487029195978265 0.738153259801883 0.019635588 0.042792827 prediction 0.476306519603767 Functional Gain - PEX14 ENSG00000142655 CDS Human protein_coding chr1:10683171 chr1:10683172 stopgain 1.000 1 22 hm5C_associated_SNPs_111936 0 0 1 0 2 PEX14 chr1:10683178 5'GT 10683178 Upstream 7bp
chr1 197889131 197889131 1 + C T HNSC 197889130 + 197889110 197889150 41 CCCGCTCAGCCCGGAGAAGCCCGCCCTGTGCGCCGGCTGCG CCCGCTCAGCCCGGAGAAGCCTGCCCTGTGCGCCGGCTGCG < 41bp 0.523773127199438 0.76192034914896 0.22258404 0.19761875 prediction 0.476294443899043 Functional Gain - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197889130 chr1:197889131 synonymous SNV . 0 22 hm5C_associated_SNPs_111937 0 0 0 0 1 LHX9 chr1:197889102 3'AG 197889102 Downstream 30bp
chr17 7214700 7214700 1 + T G COAD 7214697 + 7214677 7214717 41 CATCCAGGATGGGTACCTATCACTGCTCCAGGACAGCGGGG CATCCAGGATGGGTACCTATCACGGCTCCAGGACAGCGGGG < 41bp 0.688340914967471 0.926485402883648 0.24108067 0.8581458 prediction 0.476288975832354 Functional Gain - EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214697 chr17:7214700 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_111938 0 0 1 0 1 EIF5A chr17:7214669 3'AG 7214669 Downstream 32bp
chr10 71662562 71662562 1 + C T UCEC 71662561 + 71662541 71662581 41 GGCCCCCAGGCCCCCCTGGACCAAGTGGACCTCTGGGGCAC GGCCCCCAGGCCCCCCTGGACTAAGTGGACCTCTGGGGCAC < 41bp 0.497365746186653 0.738122162908319 0.57906663 0.15666434 prediction 0.476244325816639 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71662561 chr10:71662562 nonsynonymous SNV 0.984 4 22 hm5C_associated_SNPs_111950 0 0 0 0 2 COL13A1 chr10:71662504 3'AG 71662504 Downstream 59bp
chr10 71662562 71662562 1 + C T UCEC 71662561 + 71662541 71662581 41 GGCCCCCAGGCCCCCCTGGACCAAGTGGACCTCTGGGGCAC GGCCCCCAGGCCCCCCTGGACTAAGTGGACCTCTGGGGCAC < 41bp 0.497365746186653 0.738122162908319 0.57906663 0.15666434 prediction 0.476244325816639 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71662561 chr10:71662562 nonsynonymous SNV 0.984 4 22 hm5C_associated_SNPs_111950 0 0 0 0 2 COL13A1 chr10:71662611 5'GT 71662611 Upstream 50bp
chr2 242122122 242122122 1 + C A PAAD 242122121 + 242122101 242122141 41 GAGCTGAAGGGAGCCAGGAGCCTGGAGACAGTGTACCTGGA GAGCTGAAGGGAGCCAGGAGCATGGAGACAGTGTACCTGGA < 41bp 0.537303907354283 0.775417428119342 0.84628814 0.8892759 prediction 0.476227041530117 Functional Gain - PPP1R7 ENSG00000115685 CDS Human protein_coding chr2:242122121 chr2:242122122 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_111954 0 0 0 0 1 PPP1R7 chr2:242122062 3'AG 242122062 Downstream 61bp
chr17 48614425 48614425 1 + C T rs146173668 48614424 + 48614404 48614444 41 AGTGGGCAGCTGGGCTTCAGCCGCCGCTACGGCGAGGACTA AGTGGGCAGCTGGGCTTCAGCTGCCGCTACGGCGAGGACTA < 41bp 0.506743031011092 0.744844306979398 0.3034864 0.28191394 prediction 0.476202551936612 Functional Gain - EPN3 ENSG00000049283 CDS Human protein_coding chr17:48614424 chr17:48614425 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_111957 0 0 0 0 1 EPN3 chr17:48614479 5'GT 48614479 Upstream 55bp
chr13 111995219 111995219 1 + C G rs147238221 111995215 + 111995195 111995235 41 GCAGCAAGTTAGGGCTGAAGCCTGCGAGTCCTGGGCCTCCA GCAGCAAGTTAGGGCTGAAGCCTGGGAGTCCTGGGCCTCCA < 41bp 0.598871887602529 0.836972942970466 0.09607163 0.68858373 prediction 0.476202110735874 Functional Gain - TEX29 ENSG00000153495 CDS Human protein_coding chr13:111995215 chr13:111995219 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_111958 0 0 0 0 1 TEX29 chr13:111995278 5'GT 111995278 Upstream 60bp
chr7 6617262 6617262 1 + C G rs182391055 6617258 + 6617238 6617278 41 CACCTCGCCCGAGTCCGGGGCGGCCCCGGTGTCCCCTCCGA CACCTCGCCCGAGTCCGGGGCGGCGCCGGTGTCCCCTCCGA < 41bp 0.471836949013569 0.738096559948881 0.35480344 0.7981026 prediction 0.476193119897761 Functional Gain - ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617258 chr7:6617262 . . 0 25 hm5C_associated_SNPs_111959 0 0 1 0 2 ZDHHC4 chr7:6617221 3'AG 6617221 Downstream 42bp
chr7 6617262 6617262 1 + C G rs182391055 6617258 + 6617238 6617278 41 CACCTCGCCCGAGTCCGGGGCGGCCCCGGTGTCCCCTCCGA CACCTCGCCCGAGTCCGGGGCGGCGCCGGTGTCCCCTCCGA < 41bp 0.471836949013569 0.738096559948881 0.35480344 0.7981026 prediction 0.476193119897761 Functional Gain - ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617258 chr7:6617262 . . 0 25 hm5C_associated_SNPs_111959 0 0 1 0 2 ZDHHC4 chr7:6617351 5'GT 6617351 Upstream 90bp
chr3 124449412 124449412 1 + C G UCEC 124449408 + 124449388 124449428 41 GGGGACTTCGTGCTGAAGAGCGGGCTTTCCTCCCCCATCTA GGGGACTTCGTGCTGAAGAGCGGGGTTTCCTCCCCCATCTA < 41bp 0.608672497435782 0.846761220395806 0.92917395 0.9517188 prediction 0.476177445920049 Functional Gain - UMPS ENSG00000114491 CDS Human protein_coding chr3:124449408 chr3:124449412 nonsynonymous SNV 0.927 2 25 hm5C_associated_SNPs_111962 0 0 1 0 1 UMPS chr3:124449474 5'GT 124449474 Upstream 63bp
chr15 76633580 76633580 1 + T C HNSC 76633578 + 76633558 76633598 41 GGTGCAGACGTACCAGCCGCCGTGGAAGGCGCTCAGCGAGT GGTGCAGACGTACCAGCCGCCGCGGAAGGCGCTCAGCGAGT < 41bp 0.552661448396122 0.790749655920087 0.82918704 0.90963864 prediction 0.476176415047928 Functional Gain - ISL2 ENSG00000159556 CDS Human protein_coding chr15:76633578 chr15:76633580 nonsynonymous SNV 0.987 4 23 hm5C_associated_SNPs_111963 0 0 1 0 1 ISL2 chr15:76633642 5'GT 76633642 Upstream 63bp
chr12 64798543 64798543 1 + T G rs372201368 64798541 + 64798521 64798561 41 GCTCCGCTCCGCTGGCTGACCATCTGGAGTGCAGGCTGGGA GCTCCGCTCCGCTGGCTGACCAGCTGGAGTGCAGGCTGGGA < 41bp 0.46009267008554 0.73808438371474 0.27711266 0.6659602 prediction 0.476168767429479 Functional Gain - XPOT ENSG00000184575 UTR5 Human protein_coding chr12:64798541 chr12:64798543 . . 0 23 hm5C_associated_SNPs_111965 0 0 1 0 1 XPOT chr12:64798584 5'GT 64798584 Upstream 42bp
chr10 71025525 71025525 1 + C A UCEC 71025524 + 71025504 71025544 41 GAAGACCAGGGGCTAGAGCACCTGAGGATCACTGTGGGTGT GAAGACCAGGGGCTAGAGCACATGAGGATCACTGTGGGTGT < 41bp 0.562606048460469 0.800686231846982 0.3996144 0.73684466 prediction 0.476160366773025 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71025524 chr10:71025525 nonsynonymous SNV 0.639 1 22 hm5C_associated_SNPs_111968 0 0 0 0 1 HKDC1 chr10:71025574 5'GT 71025574 Upstream 50bp
chr3 38182337 38182337 1 + C T DLBC 38182336 + 38182316 38182356 41 AATTTGCACTCAGCCTCTCTCCAGGTAAGCTCAACCCTGCT AATTTGCACTCAGCCTCTCTCTAGGTAAGCTCAACCCTGCT < 41bp 0.487844918598164 0.738075355165646 0.93223983 0.8861698 prediction 0.476150710331292 Functional Gain - MYD88 ENSG00000172936 CDS Human protein_coding chr3:38182336 chr3:38182337 stopgain 1.000 4 22 hm5C_associated_SNPs_111969 0 0 0 0 2 MYD88 chr3:38182248 3'AG 38182248 Downstream 90bp
chr3 38182337 38182337 1 + C T DLBC 38182336 + 38182316 38182356 41 AATTTGCACTCAGCCTCTCTCCAGGTAAGCTCAACCCTGCT AATTTGCACTCAGCCTCTCTCTAGGTAAGCTCAACCCTGCT < 41bp 0.487844918598164 0.738075355165646 0.93223983 0.8861698 prediction 0.476150710331292 Functional Gain - MYD88 ENSG00000172936 CDS Human protein_coding chr3:38182336 chr3:38182337 stopgain 1.000 4 22 hm5C_associated_SNPs_111969 0 0 0 0 2 MYD88 chr3:38182339 5'GT 38182339 Upstream 3bp
chr4 78792967 78792967 1 + T G SKCM 78792964 + 78792944 78792984 41 GACATCACTTTGTTCTTGTTCTGTAAACATCCGAGTGCCCA GACATCACTTTGTTCTTGTTCTGGAAACATCCGAGTGCCCA < 41bp 0.674944183064893 0.91301337669514 0.12930158 0.20759451 prediction 0.476138387260494 Functional Gain - MRPL1 ENSG00000169288 CDS Human protein_coding chr4:78792964 chr4:78792967 nonsynonymous SNV 0.605 1 24 hm5C_associated_SNPs_111970 0 0 1 0 2 MRPL1 chr4:78792898 3'AG 78792898 Downstream 70bp
chr4 78792967 78792967 1 + T G SKCM 78792964 + 78792944 78792984 41 GACATCACTTTGTTCTTGTTCTGTAAACATCCGAGTGCCCA GACATCACTTTGTTCTTGTTCTGGAAACATCCGAGTGCCCA < 41bp 0.674944183064893 0.91301337669514 0.12930158 0.20759451 prediction 0.476138387260494 Functional Gain - MRPL1 ENSG00000169288 CDS Human protein_coding chr4:78792964 chr4:78792967 nonsynonymous SNV 0.605 1 24 hm5C_associated_SNPs_111970 0 0 1 0 2 MRPL1 chr4:78793009 5'GT 78793009 Upstream 43bp
chr16 67691379 67691379 1 + C A UCEC 67691375 + 67691355 67691395 41 CTCCAGCCCTGAGCGGAGCCCACCCTCCCCAGCCACAGACC CTCCAGCCCTGAGCGGAGCCCACCATCCCCAGCCACAGACC < 41bp 0.32255624471014 0.738062867615287 0.031490922 0.055977076 prediction 0.476125735230575 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67691375 chr16:67691379 synonymous SNV . 0 25 hm5C_associated_SNPs_111973 0 0 0 0 1 CARMIL2 chr16:67691309 3'AG 67691309 Downstream 71bp
chr7 131012753 131012753 1 + C G PRAD 131012752 + 131012732 131012772 41 CCTTTTCCTCCACCTACCTTCCCGAGTAAGTGCCGGGCCTT CCTTTTCCTCCACCTACCTTCGCGAGTAAGTGCCGGGCCTT < 41bp 0.440829241426975 0.738062737394734 0.12097868 0.30505273 prediction 0.476125474789469 Functional Gain - MKLN1 ENSG00000128585 CDS Human protein_coding chr7:131012752 chr7:131012753 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_111974 0 0 1 0 1 MKLN1 chr7:131012756 5'GT 131012756 Upstream 4bp
chr1 196749048 196749048 1 + C T LUSC 196749047 + 196749027 196749067 41 CGGTCTTCCAAAAGCGCAGACCACAGTTACATGTACGGAGA CGGTCTTCCAAAAGCGCAGACTACAGTTACATGTACGGAGA < 41bp 0.527257808920228 0.765318870013786 0.14999732 0.71877265 prediction 0.476122122187117 Functional Gain - CFHR3 ENSG00000116785 CDS Human protein_coding chr1:196749047 chr1:196749048 synonymous SNV . 0 22 hm5C_associated_SNPs_111975 0 0 0 0 1 CFHR3 chr1:196749103 5'GT 196749103 Upstream 56bp
chr11 76804838 76804838 1 + C T SKCM 76804837 + 76804817 76804857 41 AGCCTGCTCGTCACTTGCCTCCCGGGAGTCGCTGTGGCAAA AGCCTGCTCGTCACTTGCCTCTCGGGAGTCGCTGTGGCAAA < 41bp 0.562404092519747 0.800461776165012 0.17203644 0.15748069 prediction 0.476115367290531 Functional Gain - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76804837 chr11:76804838 synonymous SNV . 0 22 hm5C_associated_SNPs_111976 0 0 0 0 1 CAPN5 chr11:76804859 5'GT 76804859 Upstream 22bp
chr1 160321592 160321592 1 + C T SKCM 160321591 + 160321571 160321611 41 CAGGGTTGTGGTTGCTGCCACCCGGGTGAGTGTTGGCTTCT CAGGGTTGTGGTTGCTGCCACTCGGGTGAGTGTTGGCTTCT < 41bp 0.519462093567778 0.757517934808105 0.23013416 0.22717077 prediction 0.476111682480654 Functional Gain - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160321591 chr1:160321592 synonymous SNV . 0 22 hm5C_associated_SNPs_111978 0 0 1 0 1 NCSTN chr1:160321595 5'GT 160321595 Upstream 4bp
chr1 77987587 77987587 1 + T A ACC 77987583 + 77987563 77987603 41 ACCAGGGGCTTCCTGATTGACGGCTATCCTCGGGAGGTGAA ACCAGGGGCTTCCTGATTGACGGCAATCCTCGGGAGGTGAA < 41bp 0.644492507769255 0.882546355180253 0.5686802 0.4950142 prediction 0.476107694821996 Functional Gain - AK5 ENSG00000154027 CDS Human protein_coding chr1:77987583 chr1:77987587 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_111979 0 0 0 0 1 AK5 chr1:77987512 3'AG 77987512 Downstream 76bp
chr11 130340819 130340819 1 + C T UCEC 130340818 + 130340798 130340838 41 TGCTTCTCCCTCCCTAGCCTCCGGAAAGAGCTTCCGGGAGG TGCTTCTCCCTCCCTAGCCTCTGGAAAGAGCTTCCGGGAGG < 41bp 0.513832674401128 0.751886163921827 0.5968985 0.70558614 prediction 0.476106979041399 Functional Gain - ADAMTS15 ENSG00000166106 CDS Human protein_coding chr11:130340818 chr11:130340819 synonymous SNV . 0 22 hm5C_associated_SNPs_111980 0 0 0 0 1 ADAMTS15 chr11:130340815 3'AG 130340815 Downstream 5bp
chr19 51981946 51981946 1 + T A rs75588884 51981942 + 51981922 51981962 41 GCCTGTGGAGGAGGGTCTTCCTCATGGGTAAGAGATGCTGG GCCTGTGGAGGAGGGTCTTCCTCAAGGGTAAGAGATGCTGG < 41bp 0.63535636343055 0.873408886117217 0.18658268 0.34332237 prediction 0.476105045373334 Functional Gain - CEACAM18 ENSG00000213822 CDS Human protein_coding chr19:51981942 chr19:51981946 nonsynonymous SNV 0.311 1 25 hm5C_associated_SNPs_111981 0 0 0 0 1 CEACAM18 chr19:51981948 5'GT 51981948 Upstream 3bp
chr17 54431402 54431402 1 + C T COAD 54431401 + 54431381 54431421 41 GGACAGGGGCCCGAGAAAGTCCACACTGTAAGTAACCTGAG GGACAGGGGCCCGAGAAAGTCTACACTGTAAGTAACCTGAG < 41bp 0.512547413019505 0.750594986532646 0.039495498 0.16364127 prediction 0.476095147026282 Functional Gain - ANKFN1 ENSG00000153930 CDS Human protein_coding chr17:54431401 chr17:54431402 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111982 0 0 0 0 1 ANKFN1 chr17:54431407 5'GT 54431407 Upstream 6bp
chr3 3170829 3170829 1 + C T rs368274081 3170828 + 3170808 3170848 41 CACAATGAAGTTGCAGTCTCCCGAATTCCAGTCACTTTTCA CACAATGAAGTTGCAGTCTCCTGAATTCCAGTCACTTTTCA < 41bp 0.530769108457117 0.768812368705486 0.09446427 0.06270677 prediction 0.476086520496737 Functional Gain - TRNT1 ENSG00000072756 CDS Human protein_coding chr3:3170828 chr3:3170829 synonymous SNV . 0 22 hm5C_associated_SNPs_111984 1 0 1 3 1 TRNT1 chr3:3170872 5'GT 3170872 Upstream 44bp
chr19 48922980 48922980 1 + T C LUSC 48922978 + 48922958 48922998 41 CTGGTGTGGGCCTTCTTCGCCGTCATCTTCCTCGCCAGCTA CTGGTGTGGGCCTTCTTCGCCGCCATCTTCCTCGCCAGCTA < 41bp 0.456315586224843 0.738039171295932 0.24572077 0.36548626 prediction 0.476078342591864 Functional Gain - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48922978 chr19:48922980 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_111985 0 0 0 0 1 GRIN2D chr19:48923071 5'GT 48923071 Upstream 92bp
chr2 204245035 204245035 1 + T C COAD 204245033 + 204245013 204245053 41 AGATTATTGCTCCAGCCAACCTTGAACGACCAGTTCGTTAT AGATTATTGCTCCAGCCAACCTCGAACGACCAGTTCGTTAT < 41bp 0.451308787611777 0.738033202898208 0.061095297 0.50310355 prediction 0.476066405796417 Functional Gain - ABI2 ENSG00000138443 CDS Human protein_coding chr2:204245033 chr2:204245035 synonymous SNV . 0 23 hm5C_associated_SNPs_111987 0 0 1 0 1 ABI2 chr2:204245107 5'GT 204245107 Upstream 73bp
chr5 139201570 139201570 1 + C A COAD 139201569 + 139201549 139201589 41 GCCGGTACTGCCAGTGCAACCCTGATGACAGCACTTCGGAA GCCGGTACTGCCAGTGCAACCATGATGACAGCACTTCGGAA < 41bp 0.570786537753525 0.808819192715969 0.12279025 0.29825145 prediction 0.476065309924888 Functional Gain - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139201569 chr5:139201570 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_111988 0 0 0 0 2 PSD2 chr5:139201478 3'AG 139201478 Downstream 93bp
chr5 139201570 139201570 1 + C A COAD 139201569 + 139201549 139201589 41 GCCGGTACTGCCAGTGCAACCCTGATGACAGCACTTCGGAA GCCGGTACTGCCAGTGCAACCATGATGACAGCACTTCGGAA < 41bp 0.570786537753525 0.808819192715969 0.12279025 0.29825145 prediction 0.476065309924888 Functional Gain - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139201569 chr5:139201570 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_111988 0 0 0 0 2 PSD2 chr5:139201590 5'GT 139201590 Upstream 21bp
chr12 49745187 49745187 1 + C A BLCA 49745183 + 49745163 49745203 41 AAGGTCTGGCACCCAGACCACAACCTGGACCAGACAGAGGA AAGGTCTGGCACCCAGACCACAACATGGACCAGACAGAGGA < 41bp 0.329401517757511 0.738025580691386 0.06843811 0.09288451 prediction 0.476051161382771 Functional Gain - DNAJC22 ENSG00000178401 CDS Human protein_coding chr12:49745183 chr12:49745187 nonsynonymous SNV 0.993 1 25 hm5C_associated_SNPs_111989 0 0 0 0 1 DNAJC22 chr12:49745100 3'AG 49745100 Downstream 88bp
chr2 182346368 182346368 1 + C T READ 182346367 + 182346347 182346387 41 TTTTCGGAGCCAGCATACTACCGAAGTAGTCGGAGGAGCTC TTTTCGGAGCCAGCATACTACTGAAGTAGTCGGAGGAGCTC < 41bp 0.52628149345539 0.76430610662665 0.21121842 0.08615103 prediction 0.47604922634252 Functional Gain - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182346367 chr2:182346368 synonymous SNV . 0 22 hm5C_associated_SNPs_111990 0 0 0 0 2 ITGA4 chr2:182346325 3'AG 182346325 Downstream 44bp
chr2 182346368 182346368 1 + C T READ 182346367 + 182346347 182346387 41 TTTTCGGAGCCAGCATACTACCGAAGTAGTCGGAGGAGCTC TTTTCGGAGCCAGCATACTACTGAAGTAGTCGGAGGAGCTC < 41bp 0.52628149345539 0.76430610662665 0.21121842 0.08615103 prediction 0.47604922634252 Functional Gain - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182346367 chr2:182346368 synonymous SNV . 0 22 hm5C_associated_SNPs_111990 0 0 0 0 2 ITGA4 chr2:182346410 5'GT 182346410 Upstream 43bp
chr19 19166667 19166667 1 + T C CESC 19166665 + 19166645 19166685 41 AAGCCCGACAACAGCCGCATCATCGTGGAGGGTGGCGGGGC AAGCCCGACAACAGCCGCATCACCGTGGAGGGTGGCGGGGC < 41bp 0.471139994955653 0.738022595726544 0.49854353 0.5270397 prediction 0.476045191453088 Functional Gain - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19166665 chr19:19166667 nonsynonymous SNV 0.810 4 23 hm5C_associated_SNPs_111991 0 0 0 0 2 ARMC6 chr19:19166600 3'AG 19166600 Downstream 68bp
chr19 19166667 19166667 1 + T C CESC 19166665 + 19166645 19166685 41 AAGCCCGACAACAGCCGCATCATCGTGGAGGGTGGCGGGGC AAGCCCGACAACAGCCGCATCACCGTGGAGGGTGGCGGGGC < 41bp 0.471139994955653 0.738022595726544 0.49854353 0.5270397 prediction 0.476045191453088 Functional Gain - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19166665 chr19:19166667 nonsynonymous SNV 0.810 4 23 hm5C_associated_SNPs_111991 0 0 0 0 2 ARMC6 chr19:19166737 5'GT 19166737 Upstream 71bp
chr20 3016568 3016568 1 + C T UCEC 3016567 + 3016547 3016587 41 CAGCAGCAGTCAGGGAACCACCCCATCACCGTGCACTGCAG CAGCAGCAGTCAGGGAACCACTCCATCACCGTGCACTGCAG < 41bp 0.595719500279156 0.833740833113802 0.10699949 0.971599 prediction 0.476042665669293 Functional Gain - PTPRA ENSG00000132670 CDS Human protein_coding chr20:3016567 chr20:3016568 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_111992 0 0 1 0 1 PTPRA chr20:3016587 5'GT 3016587 Upstream 20bp
chr22 31019043 31019043 1 + C T ESCA 31019042 + 31019022 31019062 41 AGGGAGTTCTGGCAGCTTCTCCGAGACCCCAACACCCCACT AGGGAGTTCTGGCAGCTTCTCTGAGACCCCAACACCCCACT < 41bp 0.495634117857118 0.738015727205658 0.88607466 0.7686198 prediction 0.476031454411316 Functional Gain - TCN2 ENSG00000185339 CDS Human protein_coding chr22:31019042 chr22:31019043 stopgain 0.629 0 22 hm5C_associated_SNPs_111993 0 0 0 0 2 TCN2 chr22:31018955 3'AG 31018955 Downstream 89bp
chr22 31019043 31019043 1 + C T ESCA 31019042 + 31019022 31019062 41 AGGGAGTTCTGGCAGCTTCTCCGAGACCCCAACACCCCACT AGGGAGTTCTGGCAGCTTCTCTGAGACCCCAACACCCCACT < 41bp 0.495634117857118 0.738015727205658 0.88607466 0.7686198 prediction 0.476031454411316 Functional Gain - TCN2 ENSG00000185339 CDS Human protein_coding chr22:31019042 chr22:31019043 stopgain 0.629 0 22 hm5C_associated_SNPs_111993 0 0 0 0 2 TCN2 chr22:31019070 5'GT 31019070 Upstream 28bp
chr15 50494774 50494774 1 + T G UCEC 50494772 + 50494752 50494792 41 GGATTGAAGGCAGATGATGTCATCTATATCACTCTGCCCTT GGATTGAAGGCAGATGATGTCAGCTATATCACTCTGCCCTT < 41bp 0.386434140764837 0.738014826614092 0.063030094 0.34765404 prediction 0.476029653228183 Functional Gain - SLC27A2 ENSG00000140284 CDS Human protein_coding chr15:50494772 chr15:50494774 nonsynonymous SNV 0.975 1 23 hm5C_associated_SNPs_111994 0 0 1 0 2 SLC27A2 chr15:50494684 3'AG 50494684 Downstream 91bp
chr15 50494774 50494774 1 + T G UCEC 50494772 + 50494752 50494792 41 GGATTGAAGGCAGATGATGTCATCTATATCACTCTGCCCTT GGATTGAAGGCAGATGATGTCAGCTATATCACTCTGCCCTT < 41bp 0.386434140764837 0.738014826614092 0.063030094 0.34765404 prediction 0.476029653228183 Functional Gain - SLC27A2 ENSG00000140284 CDS Human protein_coding chr15:50494772 chr15:50494774 nonsynonymous SNV 0.975 1 23 hm5C_associated_SNPs_111994 0 0 1 0 2 SLC27A2 chr15:50494842 5'GT 50494842 Upstream 69bp
chr16 90089058 90089058 1 + C G rs372451257 90089057 + 90089037 90089077 41 GCGGCATCGCCCAGCGGTTGCCGGGAAACGGCGTGGCTTCC GCGGCATCGCCCAGCGGTTGCGGGGAAACGGCGTGGCTTCC < 41bp 0.611689365548439 0.849703831030659 0.90895164 0.930096 prediction 0.47602893096444 Functional Gain - GAS8 ENSG00000141013 UTR5 Human protein_coding chr16:90089057 chr16:90089058 . . 0 22 hm5C_associated_SNPs_111995 0 0 0 0 1 GAS8 chr16:90089132 5'GT 90089132 Upstream 75bp
chr17 53014490 53014490 1 + C T UCEC 53014489 + 53014469 53014509 41 GACTACCAGTGAGCCTTCTGCCCCATCTCAAGATCTCCTCG GACTACCAGTGAGCCTTCTGCTCCATCTCAAGATCTCCTCG < 41bp 0.497807175795714 0.738011831233176 0.049135774 0.73585397 prediction 0.476023662466352 Functional Gain - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014489 chr17:53014490 synonymous SNV . 0 22 hm5C_associated_SNPs_111998 0 0 1 0 2 TOM1L1 chr17:53014470 3'AG 53014470 Downstream 21bp
chr17 53014490 53014490 1 + C T UCEC 53014489 + 53014469 53014509 41 GACTACCAGTGAGCCTTCTGCCCCATCTCAAGATCTCCTCG GACTACCAGTGAGCCTTCTGCTCCATCTCAAGATCTCCTCG < 41bp 0.497807175795714 0.738011831233176 0.049135774 0.73585397 prediction 0.476023662466352 Functional Gain - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014489 chr17:53014490 synonymous SNV . 0 22 hm5C_associated_SNPs_111998 0 0 1 0 2 TOM1L1 chr17:53014587 5'GT 53014587 Upstream 98bp
chr15 102292757 102292757 1 + C A rs572230338 102292753 + 102292733 102292773 41 TCCTGGAGGAGTCGGCAGAGCAGGCACAGCGGCGCGACGAG TCCTGGAGGAGTCGGCAGAGCAGGAACAGCGGCGCGACGAG < 41bp 0.661646168811011 0.899651303946259 0.89049995 0.91334957 prediction 0.476010270270496 Functional Gain - LOC100128108;OR4F6 ENSG00000259660 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102292753 chr15:102292757 . . 0 25 hm5C_associated_SNPs_112002 0 0 0 0 1 LOC100128108;OR4F6 chr15:102292669 3'AG 102292669 Downstream 89bp
chr4 146461204 146461204 1 + C T SKCM 146461203 + 146461183 146461223 41 TCAGACCCAGGAAGCCCTTTCCAGATGCCAGGTAGGTTGGA TCAGACCCAGGAAGCCCTTTCTAGATGCCAGGTAGGTTGGA < 41bp 0.556551090655839 0.794549441510392 0.8929457 0.47098732 prediction 0.475996701709105 Functional Gain - SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146461203 chr4:146461204 stopgain 1.000 1 22 hm5C_associated_SNPs_112005 0 0 0 0 1 SMAD1 chr4:146461213 5'GT 146461213 Upstream 10bp
chr7 92027138 92027138 1 + C A OV 92027134 + 92027114 92027154 41 AGCTCTTCCCTGCGTGACTACACCCCTGCCAGTCGCTCTGA AGCTCTTCCCTGCGTGACTACACCACTGCCAGTCGCTCTGA < 41bp 0.301189554206374 0.737993345760537 0.25942364 0.3062404 prediction 0.475986691521074 Functional Gain - ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:92027134 chr7:92027138 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_112007 0 0 1 0 1 ANKIB1 chr7:92027173 5'GT 92027173 Upstream 36bp
chr1 210016835 210016835 1 + T C UCEC 210016833 + 210016813 210016853 41 ACAAGATTTTGCCACAGTATCGTGATGCAGTCATGTCTCAC ACAAGATTTTGCCACAGTATCGCGATGCAGTCATGTCTCAC < 41bp 0.599437676773458 0.837430028177516 0.3473533 0.25730893 prediction 0.475984702808116 Functional Gain - DIEXF ENSG00000117597 CDS Human protein_coding chr1:210016833 chr1:210016835 synonymous SNV . 0 23 hm5C_associated_SNPs_112009 0 0 0 0 1 DIEXF chr1:210016796 3'AG 210016796 Downstream 40bp
chr2 128386002 128386002 1 + T A UCEC 128385998 + 128385978 128386018 41 TCCACGATGCATGAGGAGTACGAGTTTGTGTCACCCAGCAG TCCACGATGCATGAGGAGTACGAGATTGTGTCACCCAGCAG < 41bp 0.626384866963457 0.864371933835768 0.34607238 0.78995174 prediction 0.475974133744622 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128385998 chr2:128386002 nonsynonymous SNV 0.036 2 25 hm5C_associated_SNPs_112010 0 0 0 0 1 MYO7B chr2:128385947 3'AG 128385947 Downstream 56bp
chr16 19310137 19310137 1 + C T rs181126361 19310136 + 19310116 19310156 41 GTTCTCTGTGGGCAGGAAGTCCGCCAAGCTGGCCTCCATCC GTTCTCTGTGGGCAGGAAGTCTGCCAAGCTGGCCTCCATCC < 41bp 0.510837569232027 0.748821138662242 0.46591824 0.10128811 prediction 0.47596713886043 Functional Gain - CLEC19A ENSG00000261210 CDS Human protein_coding chr16:19310136 chr16:19310137 synonymous SNV . 0 22 hm5C_associated_SNPs_112012 0 0 0 0 1 CLEC19A chr16:19310160 5'GT 19310160 Upstream 24bp
chr19 36257798 36257798 1 + A G rs550616208 36257795 + 36257775 36257815 41 GCGGCGGAAGCTTGAACAGGCTCAGGGAAGCAAGGGTGACA GCGGCGGAAGCTTGAACAGGCTCGGGGAAGCAAGGGTGACA < 41bp 0.500220072302644 0.738202799770922 0.34603864 0.33351094 prediction 0.475965454936557 Functional Gain - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36257795 chr19:36257798 nonsynonymous SNV 0.044 0 24 hm5C_associated_SNPs_112013 0 0 1 0 1 PROSER3 chr19:36257856 5'GT 36257856 Upstream 59bp
chr19 16338999 16338999 1 + C T UCEC 16338998 + 16338978 16339018 41 ATCGAGAAGCACTCCCACAGCCGCATCGAGTACATGATCAA ATCGAGAAGCACTCCCACAGCTGCATCGAGTACATGATCAA < 41bp 0.569111284293948 0.807087229073967 0.116523564 0.11275786 prediction 0.47595188956004 Functional Gain - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16338998 chr19:16338999 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_112016 0 0 1 0 2 AP1M1 chr19:16338948 3'AG 16338948 Downstream 52bp
chr19 16338999 16338999 1 + C T UCEC 16338998 + 16338978 16339018 41 ATCGAGAAGCACTCCCACAGCCGCATCGAGTACATGATCAA ATCGAGAAGCACTCCCACAGCTGCATCGAGTACATGATCAA < 41bp 0.569111284293948 0.807087229073967 0.116523564 0.11275786 prediction 0.47595188956004 Functional Gain - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16338998 chr19:16338999 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_112016 0 0 1 0 2 AP1M1 chr19:16339019 5'GT 16339019 Upstream 21bp
chr1 24859664 24859664 1 + C T SKCM 24859663 + 24859643 24859683 41 TCTCCCCTCCAGCCTCTCCCCCGGTGGGGTGGAAGCAGAGC TCTCCCCTCCAGCCTCTCCCCTGGTGGGGTGGAAGCAGAGC < 41bp 0.487494254640633 0.737975675504483 0.26991454 0.16176355 prediction 0.475951351008967 Functional Gain - RCAN3 ENSG00000117602 CDS Human protein_coding chr1:24859663 chr1:24859664 nonsynonymous SNV 0.026 5 22 hm5C_associated_SNPs_112017 0 0 1 0 3 RCAN3 chr1:24859573 3'AG 24859573 Downstream 92bp
chr1 24859664 24859664 1 + C T SKCM 24859663 + 24859643 24859683 41 TCTCCCCTCCAGCCTCTCCCCCGGTGGGGTGGAAGCAGAGC TCTCCCCTCCAGCCTCTCCCCTGGTGGGGTGGAAGCAGAGC < 41bp 0.487494254640633 0.737975675504483 0.26991454 0.16176355 prediction 0.475951351008967 Functional Gain - RCAN3 ENSG00000117602 CDS Human protein_coding chr1:24859663 chr1:24859664 nonsynonymous SNV 0.026 5 22 hm5C_associated_SNPs_112017 0 0 1 0 3 RCAN3 chr1:24859603 3'AG 24859603 Downstream 62bp
chr1 24859664 24859664 1 + C T SKCM 24859663 + 24859643 24859683 41 TCTCCCCTCCAGCCTCTCCCCCGGTGGGGTGGAAGCAGAGC TCTCCCCTCCAGCCTCTCCCCTGGTGGGGTGGAAGCAGAGC < 41bp 0.487494254640633 0.737975675504483 0.26991454 0.16176355 prediction 0.475951351008967 Functional Gain - RCAN3 ENSG00000117602 CDS Human protein_coding chr1:24859663 chr1:24859664 nonsynonymous SNV 0.026 5 22 hm5C_associated_SNPs_112017 0 0 1 0 3 RCAN3 chr1:24859744 5'GT 24859744 Upstream 81bp
chr22 40800308 40800308 1 + C T LAML 40800307 + 40800287 40800327 41 CCCCTCTGATGGAGGATGCTCCACAGAGGCTGCGGTGGCAG CCCCTCTGATGGAGGATGCTCTACAGAGGCTGCGGTGGCAG < 41bp 0.563321538668635 0.801292477669669 0.27485716 0.8958573 prediction 0.475941878002068 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40800307 chr22:40800308 nonsynonymous SNV 0.181 0 22 hm5C_associated_SNPs_112018 0 0 1 0 1 SGSM3 chr22:40800251 3'AG 40800251 Downstream 58bp
chr16 70503181 70503181 1 + C G SKCM 70503177 + 70503157 70503197 41 GTAGCGGGTTATCTGCAGAGCGCCCGGGCCCAGCTGTGGAG GTAGCGGGTTATCTGCAGAGCGCCGGGGCCCAGCTGTGGAG < 41bp 0.444687844806349 0.737968768150284 0.030622214 0.11202049 prediction 0.475937536300568 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70503177 chr16:70503181 nonsynonymous SNV 0.974 4 25 hm5C_associated_SNPs_112019 0 0 1 0 1 FUK chr16:70503226 5'GT 70503226 Upstream 46bp
chr10 95552607 95552607 1 + C G OV 95552606 + 95552586 95552626 41 ACATCTACTGCGAAGGCCCCCCAGAATACAAGAAGCGCAAA ACATCTACTGCGAAGGCCCCCGAGAATACAAGAAGCGCAAA < 41bp 0.632269814559714 0.870232468865786 0.09815085 0.2869904 prediction 0.475925308612144 Functional Gain - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95552606 chr10:95552607 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_112020 0 0 0 1 1 LGI1 chr10:95552669 5'GT 95552669 Upstream 63bp
chr8 20067930 20067930 1 + C T LUAD 20067929 + 20067909 20067949 41 CTGGGGATATTCTCCGAACACCGGTGTCTGAGGATATGCTT CTGGGGATATTCTCCGAACACTGGTGTCTGAGGATATGCTT < 41bp 0.508227406403213 0.746181496712553 0.28950667 0.06595734 prediction 0.47590818061868 Functional Gain - ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20067929 chr8:20067930 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112022 0 0 1 0 2 ATP6V1B2 chr8:20067857 3'AG 20067857 Downstream 74bp
chr8 20067930 20067930 1 + C T LUAD 20067929 + 20067909 20067949 41 CTGGGGATATTCTCCGAACACCGGTGTCTGAGGATATGCTT CTGGGGATATTCTCCGAACACTGGTGTCTGAGGATATGCTT < 41bp 0.508227406403213 0.746181496712553 0.28950667 0.06595734 prediction 0.47590818061868 Functional Gain - ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20067929 chr8:20067930 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112022 0 0 1 0 2 ATP6V1B2 chr8:20067950 5'GT 20067950 Upstream 21bp
chr1 55452034 55452034 1 + C A UCEC 55452033 + 55452013 55452053 41 TGGTCCGTCAAGGCCAGCATCCCAGGGCCACCTCGATGGGA TGGTCCGTCAAGGCCAGCATCACAGGGCCACCTCGATGGGA < 41bp 0.473557285771266 0.737953215517157 0.51273483 0.90178347 prediction 0.475906431034314 Functional Gain - TMEM61 ENSG00000143001 CDS Human protein_coding chr1:55452033 chr1:55452034 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_112023 0 0 0 0 1 TMEM61 chr1:55452119 5'GT 55452119 Upstream 86bp
chr2 234737632 234737632 1 + A G rs28900694 234737629 + 234737609 234737649 41 CTGCCGAGGGCATGGAGGCCCTGACCAAGATCCTGGCTGAG CTGCCGAGGGCATGGAGGCCCTGGCCAAGATCCTGGCTGAG < 41bp 0.5042156384921 0.74216661926919 0.6042224 0.67062426 prediction 0.47590196155418 Functional Gain - MROH2A ENSG00000185038 CDS Human protein_coding chr2:234737629 chr2:234737632 nonsynonymous SNV 0.232 0 24 hm5C_associated_SNPs_112024 0 0 0 0 2 MROH2A chr2:234737536 3'AG 234737536 Downstream 97bp
chr2 234737632 234737632 1 + A G rs28900694 234737629 + 234737609 234737649 41 CTGCCGAGGGCATGGAGGCCCTGACCAAGATCCTGGCTGAG CTGCCGAGGGCATGGAGGCCCTGGCCAAGATCCTGGCTGAG < 41bp 0.5042156384921 0.74216661926919 0.6042224 0.67062426 prediction 0.47590196155418 Functional Gain - MROH2A ENSG00000185038 CDS Human protein_coding chr2:234737629 chr2:234737632 nonsynonymous SNV 0.232 0 24 hm5C_associated_SNPs_112024 0 0 0 0 2 MROH2A chr2:234737718 5'GT 234737718 Upstream 87bp
chr16 30388991 30388991 1 + A G UCEC 30388988 + 30388968 30389008 41 TCTCCAGCCTGGAGGAGCTGCTGACCACGCAGTGTGACCGC TCTCCAGCCTGGAGGAGCTGCTGGCCACGCAGTGTGACCGC < 41bp 0.508366390965107 0.746298705436103 0.26695728 0.5250492 prediction 0.475864628941993 Functional Gain - MYLPF ENSG00000180209 CDS Human protein_coding chr16:30388988 chr16:30388991 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_112033 0 0 0 0 2 MYLPF chr16:30388975 3'AG 30388975 Downstream 17bp
chr16 30388991 30388991 1 + A G UCEC 30388988 + 30388968 30389008 41 TCTCCAGCCTGGAGGAGCTGCTGACCACGCAGTGTGACCGC TCTCCAGCCTGGAGGAGCTGCTGGCCACGCAGTGTGACCGC < 41bp 0.508366390965107 0.746298705436103 0.26695728 0.5250492 prediction 0.475864628941993 Functional Gain - MYLPF ENSG00000180209 CDS Human protein_coding chr16:30388988 chr16:30388991 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_112033 0 0 0 0 2 MYLPF chr16:30389023 5'GT 30389023 Upstream 33bp
chr18 67345064 67345064 1 + C T COAD 67345063 + 67345043 67345083 41 TGGGGAGCCCGACCTTCTGGCCGCAGGAGTGCAGCGGGAAC TGGGGAGCCCGACCTTCTGGCTGCAGGAGTGCAGCGGGAAC < 41bp 0.498393980842543 0.737924289933431 0.26540023 0.26882014 prediction 0.475848579866862 Functional Gain - DOK6 ENSG00000206052 CDS Human protein_coding chr18:67345063 chr18:67345064 synonymous SNV . 0 22 hm5C_associated_SNPs_112034 0 0 1 0 2 DOK6 chr18:67344970 3'AG 67344970 Downstream 95bp
chr18 67345064 67345064 1 + C T COAD 67345063 + 67345043 67345083 41 TGGGGAGCCCGACCTTCTGGCCGCAGGAGTGCAGCGGGAAC TGGGGAGCCCGACCTTCTGGCTGCAGGAGTGCAGCGGGAAC < 41bp 0.498393980842543 0.737924289933431 0.26540023 0.26882014 prediction 0.475848579866862 Functional Gain - DOK6 ENSG00000206052 CDS Human protein_coding chr18:67345063 chr18:67345064 synonymous SNV . 0 22 hm5C_associated_SNPs_112034 0 0 1 0 2 DOK6 chr18:67345089 5'GT 67345089 Upstream 26bp
chr22 23503161 23503161 1 + C A LUSC 23503160 + 23503140 23503180 41 AGGCAGAGCAGTGCCCGGCTCCAGGTCGGCAATGGAGACCT AGGCAGAGCAGTGCCCGGCTCAAGGTCGGCAATGGAGACCT < 41bp 0.475570929876708 0.737910809968539 0.77842283 0.7792082 prediction 0.475821619937078 Functional Gain - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23503160 chr22:23503161 nonsynonymous SNV 0.647 1 22 hm5C_associated_SNPs_112037 0 0 0 0 2 RAB36 chr22:23503066 3'AG 23503066 Downstream 96bp
chr22 23503161 23503161 1 + C A LUSC 23503160 + 23503140 23503180 41 AGGCAGAGCAGTGCCCGGCTCCAGGTCGGCAATGGAGACCT AGGCAGAGCAGTGCCCGGCTCAAGGTCGGCAATGGAGACCT < 41bp 0.475570929876708 0.737910809968539 0.77842283 0.7792082 prediction 0.475821619937078 Functional Gain - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23503160 chr22:23503161 nonsynonymous SNV 0.647 1 22 hm5C_associated_SNPs_112037 0 0 0 0 2 RAB36 chr22:23503185 5'GT 23503185 Upstream 25bp
chr9 129377811 129377811 1 + C T STAD 129377810 + 129377790 129377830 41 CTCACCACCAGCTGCTACTTCCGGGATCGGAAACTGTACTG CTCACCACCAGCTGCTACTTCTGGGATCGGAAACTGTACTG < 41bp 0.516724011624451 0.75463104221831 0.9150174 0.8063264 prediction 0.475814061187719 Functional Gain - LMX1B ENSG00000136944 CDS Human protein_coding chr9:129377810 chr9:129377811 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_112039 0 0 0 0 1 LMX1B chr9:129377848 5'GT 129377848 Upstream 38bp
chr2 234858699 234858699 1 + C G STAD 234858695 + 234858675 234858715 41 TGGTGGAGGTGGAGGATGCCCTGACATCTTCTGCCGTCAAG TGGTGGAGGTGGAGGATGCCCTGAGATCTTCTGCCGTCAAG < 41bp 0.624100995577961 0.862007656811208 0.15581608 0.25625604 prediction 0.475813322466493 Functional Gain - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234858695 chr2:234858699 nonsynonymous SNV 0.011 0 25 hm5C_associated_SNPs_112040 0 0 0 0 1 TRPM8 chr2:234858790 5'GT 234858790 Upstream 92bp
chr19 8503369 8503369 1 + C T SKCM 8503368 + 8503348 8503388 41 AGGCGGACAGCCCCGAGGGCCCCCAGCATTCTCCACTGGCA AGGCGGACAGCCCCGAGGGCCTCCAGCATTCTCCACTGGCA < 41bp 0.54912092415115 0.787020839938209 0.03963104 0.9316486 prediction 0.475799831574118 Functional Gain - MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8503368 chr19:8503369 nonsynonymous SNV 0.007 0 22 hm5C_associated_SNPs_112041 0 0 0 0 1 MARCH2 chr19:8503272 3'AG 8503272 Downstream 98bp
chr9 120470905 120470905 1 + C A HNSC 120470901 + 120470881 120470921 41 TCTACAAAATCCCCGACAACCTCCCCTTCTCAACCAAGAAC TCTACAAAATCCCCGACAACCTCCACTTCTCAACCAAGAAC < 41bp 0.300555745927787 0.737897727865897 0.0096588135 0.8651438 prediction 0.475795455731793 Functional Gain - TLR4 ENSG00000136869 CDS Human protein_coding chr9:120470901 chr9:120470905 nonsynonymous SNV 0.583 4 25 hm5C_associated_SNPs_112042 0 0 0 0 1 TLR4 chr9:120470841 3'AG 120470841 Downstream 65bp
chr10 102824351 102824351 1 + C T COAD 102824350 + 102824330 102824370 41 GGCACTTACCGCTGCCTTGGCCGCAATGCCCTGGGTCAAGT GGCACTTACCGCTGCCTTGGCTGCAATGCCCTGGGTCAAGT < 41bp 0.478249594677616 0.73789529476094 0.21490216 0.19574025 prediction 0.475790589521881 Functional Gain - KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824350 chr10:102824351 nonsynonymous SNV 0.730 4 22 hm5C_associated_SNPs_112043 0 0 0 0 2 KAZALD1 chr10:102824258 3'AG 102824258 Downstream 94bp
chr10 102824351 102824351 1 + C T COAD 102824350 + 102824330 102824370 41 GGCACTTACCGCTGCCTTGGCCGCAATGCCCTGGGTCAAGT GGCACTTACCGCTGCCTTGGCTGCAATGCCCTGGGTCAAGT < 41bp 0.478249594677616 0.73789529476094 0.21490216 0.19574025 prediction 0.475790589521881 Functional Gain - KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824350 chr10:102824351 nonsynonymous SNV 0.730 4 22 hm5C_associated_SNPs_112043 0 0 0 0 2 KAZALD1 chr10:102824405 5'GT 102824405 Upstream 55bp
chr4 3478174 3478174 1 + C G COAD 3478173 + 3478153 3478193 41 TCTTGGCCAGGGACATCCCCCCGGCTGTCACGGGGCAGTGG TCTTGGCCAGGGACATCCCCCGGGCTGTCACGGGGCAGTGG < 41bp 0.406301084370775 0.73789065381294 0.52160853 0.91610444 prediction 0.47578130762588 Functional Gain - DOK7 ENSG00000175920 CDS Human protein_coding chr4:3478173 chr4:3478174 nonsynonymous SNV 0.051 3 22 hm5C_associated_SNPs_112044 0 0 0 0 2 DOK7 chr4:3478258 5'GT 3478258 Upstream 85bp
chr4 3478174 3478174 1 + C G COAD 3478173 + 3478153 3478193 41 TCTTGGCCAGGGACATCCCCCCGGCTGTCACGGGGCAGTGG TCTTGGCCAGGGACATCCCCCGGGCTGTCACGGGGCAGTGG < 41bp 0.406301084370775 0.73789065381294 0.52160853 0.91610444 prediction 0.47578130762588 Functional Gain - DOK7 ENSG00000175920 CDS Human protein_coding chr4:3478173 chr4:3478174 nonsynonymous SNV 0.051 3 22 hm5C_associated_SNPs_112044 0 0 0 0 2 DOK7 chr4:3478269 5'GT 3478269 Upstream 96bp
chr4 88047467 88047467 1 + C T SKCM 88047466 + 88047446 88047486 41 AAGAGTAGAGGGGAAGGGCTCCAGAAGCTCCTCGGAGCACA AAGAGTAGAGGGGAAGGGCTCTAGAAGCTCCTCGGAGCACA < 41bp 0.544716338471455 0.78260671678618 0.7477391 0.6765556 prediction 0.475780756629451 Functional Gain - AFF1 ENSG00000172493 CDS Human protein_coding chr4:88047466 chr4:88047467 synonymous SNV . 0 22 hm5C_associated_SNPs_112045 0 0 0 0 1 AFF1 chr4:88047488 5'GT 88047488 Upstream 22bp
chr22 42264749 42264749 1 + C T SKCM 42264748 + 42264728 42264768 41 GGCACGCTGCAGACCCTTGCCCCGGCTACGGTGCAGACAGT GGCACGCTGCAGACCCTTGCCTCGGCTACGGTGCAGACAGT < 41bp 0.480956617084912 0.737887866340969 0.4004027 0.5506272 prediction 0.475775732681939 Functional Gain - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42264748 chr22:42264749 nonsynonymous SNV 0.924 3 22 hm5C_associated_SNPs_112046 0 0 1 0 1 SREBF2 chr22:42264796 5'GT 42264796 Upstream 48bp
chr18 29704751 29704751 1 + C A LIHC 29704750 + 29704730 29704770 41 GTGTCAAGAATCAAATTTTACCAGACAGCGTTTACTGGATC GTGTCAAGAATCAAATTTTACAAGACAGCGTTTACTGGATC < 41bp 0.489730451013098 0.737887784859251 0.02076289 0.043604493 prediction 0.475775569718501 Functional Gain - RNF138 ENSG00000134758 CDS Human protein_coding chr18:29704750 chr18:29704751 synonymous SNV . 0 22 hm5C_associated_SNPs_112047 0 0 1 0 2 RNF138 chr18:29704697 3'AG 29704697 Downstream 55bp
chr18 29704751 29704751 1 + C A LIHC 29704750 + 29704730 29704770 41 GTGTCAAGAATCAAATTTTACCAGACAGCGTTTACTGGATC GTGTCAAGAATCAAATTTTACAAGACAGCGTTTACTGGATC < 41bp 0.489730451013098 0.737887784859251 0.02076289 0.043604493 prediction 0.475775569718501 Functional Gain - RNF138 ENSG00000134758 CDS Human protein_coding chr18:29704750 chr18:29704751 synonymous SNV . 0 22 hm5C_associated_SNPs_112047 0 0 1 0 2 RNF138 chr18:29704808 5'GT 29704808 Upstream 58bp
chr15 67813876 67813876 1 - G T UCEC 67813877 - 67813857 67813897 41 TTCTGCCGGGCCAGGTCCTGCCAGGGAGCCTTGGAGCAGTG TTCTGCCGGGCCAGGTCCTGCAAGGGAGCCTTGGAGCAGTG < 41bp 0.517914807224749 0.755797904645177 0.7281364 0.8301834 prediction 0.475766194840856 Functional Gain - C15orf61 ENSG00000189227 CDS Human protein_coding chr15:67813877 chr15:67813876 nonsynonymous SNV 0.948 0 22 hm5C_associated_SNPs_112050 0 0 1 0 2 C15orf61 chr15:67813832 5'GT 67813832 Upstream 45bp
chr15 67813876 67813876 1 - G T UCEC 67813877 - 67813857 67813897 41 TTCTGCCGGGCCAGGTCCTGCCAGGGAGCCTTGGAGCAGTG TTCTGCCGGGCCAGGTCCTGCAAGGGAGCCTTGGAGCAGTG < 41bp 0.517914807224749 0.755797904645177 0.7281364 0.8301834 prediction 0.475766194840856 Functional Gain - C15orf61 ENSG00000189227 CDS Human protein_coding chr15:67813877 chr15:67813876 nonsynonymous SNV 0.948 0 22 hm5C_associated_SNPs_112050 0 0 1 0 2 C15orf61 chr15:67813857 5'GT 67813857 Upstream 20bp
chr2 121743921 121743921 1 + C T SKCM 121743920 + 121743900 121743940 41 CCTCTCCTCTGGGCAGTGCCCCCAACAATGACAGTGGCGTG CCTCTCCTCTGGGCAGTGCCCTCAACAATGACAGTGGCGTG < 41bp 0.484194959356792 0.737866301676372 0.04554048 0.037160963 prediction 0.475732603352744 Functional Gain - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121743920 chr2:121743921 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_112057 0 0 0 0 1 GLI2 chr2:121743854 3'AG 121743854 Downstream 68bp
chr12 56428444 56428444 1 + C T SKCM 56428443 + 56428423 56428463 41 GATGTGGAGTTGGTGGCACACCACAGCCTAGAGCCTGGCTT GATGTGGAGTTGGTGGCACACTACAGCCTAGAGCCTGGCTT < 41bp 0.528039668581515 0.765905313524376 0.10309249 0.2945133 prediction 0.475731289885722 Functional Gain - IKZF4 ENSG00000123411 CDS Human protein_coding chr12:56428443 chr12:56428444 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_112058 0 0 1 0 1 IKZF4 chr12:56428355 3'AG 56428355 Downstream 90bp
chr17 79887875 79887875 1 + A G rs181779588 79887872 + 79887852 79887892 41 AGGCTGCACCTTCTGTGGGACTGAGCCCCGCAGGCACTTCC AGGCTGCACCTTCTGTGGGACTGGGCCCCGCAGGCACTTCC < 41bp 0.505366830636562 0.743216590897621 0.40279776 0.61423194 prediction 0.475699520522119 Functional Gain - MAFG-AS1 ENSG00000265688 ncRNA_exonic Human antisense chr17:79887872 chr17:79887875 . . 0 24 hm5C_associated_SNPs_112061 0 0 0 0 1 MAFG-AS1 chr17:79887854 3'AG 79887854 Downstream 22bp
chr3 119347670 119347670 1 + T C LUAD 119347668 + 119347648 119347688 41 TGGAAAAAAGACCGGACTACCATTATTGGGAAGTTCTGCAC TGGAAAAAAGACCGGACTACCACTATTGGGAAGTTCTGCAC < 41bp 0.582435303721776 0.820282459315752 0.16352409 0.15950093 prediction 0.475694311187952 Functional Gain - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119347668 chr3:119347670 nonsynonymous SNV 0.035 2 23 hm5C_associated_SNPs_112064 0 0 0 1 1 PLA1A chr3:119347712 5'GT 119347712 Upstream 43bp
chr5 177309375 177309375 1 + C G LIHC 177309374 + 177309354 177309394 41 CTGTCTTTTTTCTCAGCTACCCAGAACTGAAGCCTGTGCAG CTGTCTTTTTTCTCAGCTACCGAGAACTGAAGCCTGTGCAG < 41bp 0.627375175574903 0.865221629282122 0.24513355 0.48166424 prediction 0.47569290741444 Functional Gain - LOC728554 ENSG00000170089 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:177309374 chr5:177309375 . . 0 22 hm5C_associated_SNPs_112065 0 0 0 0 1 LOC728554 chr5:177309370 3'AG 177309370 Downstream 6bp
chr2 113950132 113950132 1 + C T SKCM 113950131 + 113950111 113950151 41 CTCTATCGCCTGGAGGGCTTCCGGAAGTCTGAAGTGGCTGC CTCTATCGCCTGGAGGGCTTCTGGAAGTCTGAAGTGGCTGC < 41bp 0.555598871395407 0.793443451294916 0.855995 0.8239559 prediction 0.475689159799016 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950131 chr2:113950132 nonsynonymous SNV 0.402 3 22 hm5C_associated_SNPs_112066 0 0 1 0 1 PSD4 chr2:113950166 5'GT 113950166 Upstream 35bp
chr19 42402678 42402678 1 + C T COAD 42402677 + 42402657 42402697 41 CGGCTGGCGGGAACTCGTCCCCCCAGACACCCTGCACAGCC CGGCTGGCGGGAACTCGTCCCTCCAGACACCCTGCACAGCC < 41bp 0.535298981476681 0.773139075279735 0.3880045 0.9665426 prediction 0.475680187606107 Functional Gain - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42402677 chr19:42402678 synonymous SNV . 0 22 hm5C_associated_SNPs_112067 0 0 1 0 2 ARHGEF1 chr19:42402591 3'AG 42402591 Downstream 88bp
chr19 42402678 42402678 1 + C T COAD 42402677 + 42402657 42402697 41 CGGCTGGCGGGAACTCGTCCCCCCAGACACCCTGCACAGCC CGGCTGGCGGGAACTCGTCCCTCCAGACACCCTGCACAGCC < 41bp 0.535298981476681 0.773139075279735 0.3880045 0.9665426 prediction 0.475680187606107 Functional Gain - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42402677 chr19:42402678 synonymous SNV . 0 22 hm5C_associated_SNPs_112067 0 0 1 0 2 ARHGEF1 chr19:42402736 5'GT 42402736 Upstream 59bp
chr16 29853106 29853106 1 + C A LUSC 29853105 + 29853085 29853125 41 AAGACCCGTGTGGTCAGCTACCGCGTGCCCCACAACGCTGC AAGACCCGTGTGGTCAGCTACAGCGTGCCCCACAACGCTGC < 41bp 0.478470550607797 0.737837632122758 0.3246135 0.7235795 prediction 0.475675264245515 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29853105 chr16:29853106 nonsynonymous SNV 0.837 3 22 hm5C_associated_SNPs_112068 0 0 1 0 1 MVP chr16:29853161 5'GT 29853161 Upstream 56bp
chr15 63597864 63597864 1 + C T SKCM 63597863 + 63597843 63597883 41 CTGGCGTCAGCATTTATAATCCTGGTGCTCATGGGCACCTG CTGGCGTCAGCATTTATAATCTTGGTGCTCATGGGCACCTG < 41bp 0.505218374987964 0.74304636044667 0.45146376 0.19192383 prediction 0.475655970917412 Functional Gain - APH1B ENSG00000138613 CDS Human protein_coding chr15:63597863 chr15:63597864 nonsynonymous SNV 0.937 0 22 hm5C_associated_SNPs_112070 0 0 1 0 1 APH1B chr15:63597813 3'AG 63597813 Downstream 52bp
chr16 67859635 67859635 1 + C A THCA 67859634 + 67859614 67859654 41 ATGACCCGGCAAGACCTGACCCGCACGCAGATGGAACTCAA ATGACCCGGCAAGACCTGACCAGCACGCAGATGGAACTCAA < 41bp 0.517208632823982 0.755035767589006 0.03428912 0.0471825 prediction 0.475654269530047 Functional Gain - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67859634 chr16:67859635 nonsynonymous SNV 0.990 0 22 hm5C_associated_SNPs_112072 0 0 1 0 1 TSNAXIP1 chr16:67859570 3'AG 67859570 Downstream 66bp
chr6 148854022 148854022 1 + C T UCEC 148854021 + 148854001 148854041 41 GATGACGAAGAGCCGCCTTACCGAGGCCCGTTCTGCGGGCG GATGACGAAGAGCCGCCTTACTGAGGCCCGTTCTGCGGGCG < 41bp 0.489328390454592 0.737822885470912 0.93171614 0.8855126 prediction 0.475645770941823 Functional Gain - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148854021 chr6:148854022 stopgain 0.432 1 22 hm5C_associated_SNPs_112073 0 0 1 0 2 SASH1 chr6:148853933 3'AG 148853933 Downstream 90bp
chr6 148854022 148854022 1 + C T UCEC 148854021 + 148854001 148854041 41 GATGACGAAGAGCCGCCTTACCGAGGCCCGTTCTGCGGGCG GATGACGAAGAGCCGCCTTACTGAGGCCCGTTCTGCGGGCG < 41bp 0.489328390454592 0.737822885470912 0.93171614 0.8855126 prediction 0.475645770941823 Functional Gain - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148854021 chr6:148854022 stopgain 0.432 1 22 hm5C_associated_SNPs_112073 0 0 1 0 2 SASH1 chr6:148854102 5'GT 148854102 Upstream 81bp
chr7 141756717 141756717 1 + A G SARC 141756714 + 141756694 141756734 41 TGTGTTCTTGGGGCCGACTCCAGAGCTTGTCACCCAGCAGT TGTGTTCTTGGGGCCGACTCCAGGGCTTGTCACCCAGCAGT < 41bp 0.519497667729492 0.757319815740545 0.8984006 0.9256445 prediction 0.475644296022105 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141756714 chr7:141756717 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_112074 0 0 0 0 2 MGAM chr7:141756630 3'AG 141756630 Downstream 88bp
chr7 141756717 141756717 1 + A G SARC 141756714 + 141756694 141756734 41 TGTGTTCTTGGGGCCGACTCCAGAGCTTGTCACCCAGCAGT TGTGTTCTTGGGGCCGACTCCAGGGCTTGTCACCCAGCAGT < 41bp 0.519497667729492 0.757319815740545 0.8984006 0.9256445 prediction 0.475644296022105 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141756714 chr7:141756717 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_112074 0 0 0 0 2 MGAM chr7:141756742 5'GT 141756742 Upstream 26bp
chr19 50965201 50965201 1 + A G LIHC 50965198 + 50965178 50965218 41 AGTATAAGGAGCATGACTTCCGGATGGCTCCCAAGTTCCTG AGTATAAGGAGCATGACTTCCGGGTGGCTCCCAAGTTCCTG < 41bp 0.505267381519049 0.743075119908495 0.7239122 0.88470775 prediction 0.475615476778893 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50965198 chr19:50965201 nonsynonymous SNV 0.943 1 24 hm5C_associated_SNPs_112077 0 0 0 0 2 MYBPC2 chr19:50965157 3'AG 50965157 Downstream 45bp
chr19 50965201 50965201 1 + A G LIHC 50965198 + 50965178 50965218 41 AGTATAAGGAGCATGACTTCCGGATGGCTCCCAAGTTCCTG AGTATAAGGAGCATGACTTCCGGGTGGCTCCCAAGTTCCTG < 41bp 0.505267381519049 0.743075119908495 0.7239122 0.88470775 prediction 0.475615476778893 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50965198 chr19:50965201 nonsynonymous SNV 0.943 1 24 hm5C_associated_SNPs_112077 0 0 0 0 2 MYBPC2 chr19:50965293 5'GT 50965293 Upstream 93bp
chr1 179041129 179041129 1 + T C rs556474499 179041127 + 179041107 179041147 41 CCTTAAAATCTGCCATGGCCCATGACCCCATCTCCCCAGTG CCTTAAAATCTGCCATGGCCCACGACCCCATCTCCCCAGTG < 41bp 0.57488270177377 0.812674160621167 0.050417542 0.038427085 prediction 0.475582917694793 Functional Gain - FAM20B ENSG00000116199 CDS Human protein_coding chr1:179041127 chr1:179041129 synonymous SNV . 0 23 hm5C_associated_SNPs_112082 0 0 1 0 1 FAM20B chr1:179041048 3'AG 179041048 Downstream 82bp
chr21 43829575 43829575 1 + C A STAD 43829574 + 43829554 43829594 41 CTTCCCTAGACGACCCCATCCCCCAGGAGTATGCCCTTTTC CTTCCCTAGACGACCCCATCCACCAGGAGTATGCCCTTTTC < 41bp 0.558603637452234 0.796394870535429 0.06427199 0.08703303 prediction 0.47558246616639 Functional Gain - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43829574 chr21:43829575 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112083 0 0 0 0 1 UBASH3A chr21:43829531 3'AG 43829531 Downstream 45bp
chr7 130025175 130025175 1 + C A LUAD 130025174 + 130025154 130025194 41 AAAACAGAACCAGTCCCTGACCAGGATGAGCTGGTAGGCAC AAAACAGAACCAGTCCCTGACAAGGATGAGCTGGTAGGCAC < 41bp 0.549902506889188 0.787693095015227 0.069195986 0.41780812 prediction 0.475581176252079 Functional Gain - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130025174 chr7:130025175 nonsynonymous SNV 0.013 0 22 hm5C_associated_SNPs_112084 0 0 0 0 1 CPA1 chr7:130025186 5'GT 130025186 Upstream 12bp
chr1 156552135 156552135 1 + C T LIHC 156552134 + 156552114 156552154 41 CTGGGTGCCAGGAGAGCAGGCCACAGTGCTAAGAAACCTCG CTGGGTGCCAGGAGAGCAGGCTACAGTGCTAAGAAACCTCG < 41bp 0.48152622758276 0.737781387525862 0.40388718 0.21932018 prediction 0.475562775051724 Functional Gain - TTC24 ENSG00000187862 CDS Human protein_coding chr1:156552134 chr1:156552135 synonymous SNV . 0 22 hm5C_associated_SNPs_112090 0 0 0 0 1 TTC24 chr1:156552226 5'GT 156552226 Upstream 92bp
chr2 233321902 233321902 1 + C G SKCM 233321898 + 233321878 233321918 41 TGACCACCACACGGGTGCAGCACGCCTCGCCAGCCGGCACC TGACCACCACACGGGTGCAGCACGGCTCGCCAGCCGGCACC < 41bp 0.437919518021771 0.737780119686781 0.058445603 0.29286844 prediction 0.475560239373563 Functional Gain - ALPI ENSG00000163295 CDS Human protein_coding chr2:233321898 chr2:233321902 nonsynonymous SNV 0.635 5 25 hm5C_associated_SNPs_112091 0 0 0 0 1 ALPI chr2:233321860 3'AG 233321860 Downstream 43bp
chr1 110740774 110740774 1 + C A COAD 110740770 + 110740750 110740790 41 CCCTCATCGTCGTGGCGACGCTGCCCATCCCTGTGGTGTTC CCCTCATCGTCGTGGCGACGCTGCACATCCCTGTGGTGTTC < 41bp 0.327466365900556 0.737764668670906 0.024635315 0.15828747 prediction 0.475529337341811 Functional Gain - SLC6A17 ENSG00000197106 CDS Human protein_coding chr1:110740770 chr1:110740774 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_112095 0 0 0 0 1 SLC6A17 chr1:110740698 3'AG 110740698 Downstream 77bp
chr16 27709797 27709797 1 + C G rs61740297 27709796 + 27709776 27709816 41 GGCGCTCCTCAGCAGAAAGGCCGAGCAGCCAGCCAGCCCAC GGCGCTCCTCAGCAGAAAGGCGGAGCAGCCAGCCAGCCCAC < 41bp 0.421435114251064 0.737753329350379 0.21997634 0.8806966 prediction 0.475506658700759 Functional Gain - KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27709796 chr16:27709797 synonymous SNV . 0 22 hm5C_associated_SNPs_112097 0 0 1 0 1 KIAA0556 chr16:27709821 5'GT 27709821 Upstream 25bp
chr12 111291279 111291279 1 + C A rs145388107 111291275 + 111291255 111291295 41 CGGAGAAGGCCAAAGAGCAGCAGGCGGAGGCAGAGCTCCGG CGGAGAAGGCCAAAGAGCAGCAGGAGGAGGCAGAGCTCCGG < 41bp 0.689858735601475 0.927598305350315 0.8847699 0.8843485 prediction 0.475479139497681 Functional Gain - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111291275 chr12:111291279 nonsynonymous SNV 0.144 1 25 hm5C_associated_SNPs_112098 0 0 0 0 2 CCDC63 chr12:111291209 3'AG 111291209 Downstream 71bp
chr12 111291279 111291279 1 + C A rs145388107 111291275 + 111291255 111291295 41 CGGAGAAGGCCAAAGAGCAGCAGGCGGAGGCAGAGCTCCGG CGGAGAAGGCCAAAGAGCAGCAGGAGGAGGCAGAGCTCCGG < 41bp 0.689858735601475 0.927598305350315 0.8847699 0.8843485 prediction 0.475479139497681 Functional Gain - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111291275 chr12:111291279 nonsynonymous SNV 0.144 1 25 hm5C_associated_SNPs_112098 0 0 0 0 2 CCDC63 chr12:111291378 5'GT 111291378 Upstream 100bp
chr3 35833988 35833988 1 + T C STAD 35833986 + 35833966 35834006 41 CAAGGAACTCCGGTGCAAAGCGTGATGGTTTCCTACCCAAC CAAGGAACTCCGGTGCAAAGCGCGATGGTTTCCTACCCAAC < 41bp 0.486595383258425 0.737739219484045 0.24930733 0.5821919 prediction 0.47547843896809 Functional Gain - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35833986 chr3:35833988 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_112100 0 0 0 0 1 ARPP21 chr3:35834022 5'GT 35834022 Upstream 35bp
chr16 81965174 81965174 1 + C T LUSC 81965173 + 81965153 81965193 41 CCAAGCAGCAGGGCGATCCTCCGGTGGAGTTTGCCACAGAC CCAAGCAGCAGGGCGATCCTCTGGTGGAGTTTGCCACAGAC < 41bp 0.534141262233527 0.771880049683564 0.8912443 0.81219316 prediction 0.475477574900073 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81965173 chr16:81965174 nonsynonymous SNV 0.951 2 22 hm5C_associated_SNPs_112101 0 0 0 0 2 PLCG2 chr16:81965102 3'AG 81965102 Downstream 73bp
chr16 81965174 81965174 1 + C T LUSC 81965173 + 81965153 81965193 41 CCAAGCAGCAGGGCGATCCTCCGGTGGAGTTTGCCACAGAC CCAAGCAGCAGGGCGATCCTCTGGTGGAGTTTGCCACAGAC < 41bp 0.534141262233527 0.771880049683564 0.8912443 0.81219316 prediction 0.475477574900073 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81965173 chr16:81965174 nonsynonymous SNV 0.951 2 22 hm5C_associated_SNPs_112101 0 0 0 0 2 PLCG2 chr16:81965259 5'GT 81965259 Upstream 86bp
chr1 205238102 205238102 1 + C A LAML 205238101 + 205238081 205238121 41 GATAAGGGAGACCTGGTGGCCCTGAGCCTCCCCGCCGGCCA GATAAGGGAGACCTGGTGGCCATGAGCCTCCCCGCCGGCCA < 41bp 0.542354905581788 0.780083609664194 0.27752283 0.55565697 prediction 0.475457408164812 Functional Gain - TMCC2 ENSG00000133069 CDS Human protein_coding chr1:205238101 chr1:205238102 nonsynonymous SNV 0.965 1 22 hm5C_associated_SNPs_112104 0 0 0 0 1 TMCC2 chr1:205238078 3'AG 205238078 Downstream 25bp
chr7 129348937 129348937 1 + C A LUAD 129348936 + 129348916 129348956 41 CCCAGCTTCGGGCATTTATCCCAGAGATGCTCAAGTACTCT CCCAGCTTCGGGCATTTATCCAAGAGATGCTCAAGTACTCT < 41bp 0.563298971608985 0.801026306632385 0.8588435 0.8882165 prediction 0.475454670046799 Functional Gain - NRF1 ENSG00000106459 CDS Human protein_coding chr7:129348936 chr7:129348937 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_112105 0 0 1 0 1 NRF1 chr7:129348915 3'AG 129348915 Downstream 23bp
chr5 1217003 1217003 1 + C T SKCM 1217002 + 1216982 1217022 41 GCGGTGCAACGCCTCCGACCCCGCGGCCTACGCGCAGCTGG GCGGTGCAACGCCTCCGACCCTGCGGCCTACGCGCAGCTGG < 41bp 0.526842471656213 0.764561456234082 0.7406745 0.28267252 prediction 0.475437969155738 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1217002 chr5:1217003 synonymous SNV . 0 22 hm5C_associated_SNPs_112106 0 0 0 0 2 SLC6A19 chr5:1216904 3'AG 1216904 Downstream 100bp
chr5 1217003 1217003 1 + C T SKCM 1217002 + 1216982 1217022 41 GCGGTGCAACGCCTCCGACCCCGCGGCCTACGCGCAGCTGG GCGGTGCAACGCCTCCGACCCTGCGGCCTACGCGCAGCTGG < 41bp 0.526842471656213 0.764561456234082 0.7406745 0.28267252 prediction 0.475437969155738 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1217002 chr5:1217003 synonymous SNV . 0 22 hm5C_associated_SNPs_112106 0 0 0 0 2 SLC6A19 chr5:1217060 5'GT 1217060 Upstream 58bp
chr15 80743312 80743312 1 + C T SKCM 80743311 + 80743291 80743331 41 GATGGCGGGGGCCATGCCTGCCCGTGGAGGAAAGCGGCGTT GATGGCGGGGGCCATGCCTGCTCGTGGAGGAAAGCGGCGTT < 41bp 0.540036731102495 0.777738854764611 0.4142878 0.6939086 prediction 0.475404247324233 Functional Gain - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80743311 chr15:80743312 synonymous SNV . 0 22 hm5C_associated_SNPs_112114 0 0 0 0 2 ARNT2 chr15:80743221 3'AG 80743221 Downstream 92bp
chr15 80743312 80743312 1 + C T SKCM 80743311 + 80743291 80743331 41 GATGGCGGGGGCCATGCCTGCCCGTGGAGGAAAGCGGCGTT GATGGCGGGGGCCATGCCTGCTCGTGGAGGAAAGCGGCGTT < 41bp 0.540036731102495 0.777738854764611 0.4142878 0.6939086 prediction 0.475404247324233 Functional Gain - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80743311 chr15:80743312 synonymous SNV . 0 22 hm5C_associated_SNPs_112114 0 0 0 0 2 ARNT2 chr15:80743335 5'GT 80743335 Upstream 24bp
chr19 36256067 36256067 1 + C T SKCM 36256066 + 36256046 36256086 41 CTCCAGCAAGGGCCTTGGCCCCAGGGCACCCGGTAAGGGCT CTCCAGCAAGGGCCTTGGCCCTAGGGCACCCGGTAAGGGCT < 41bp 0.505706860970683 0.743406491710916 0.368808 0.23019657 prediction 0.475399261480465 Functional Gain - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36256066 chr19:36256067 synonymous SNV . 0 22 hm5C_associated_SNPs_112116 0 0 1 0 1 PROSER3 chr19:36256077 5'GT 36256077 Upstream 11bp
chr17 79673976 79673976 1 + A G GBM 79673973 + 79673953 79673993 41 CCCCATAGCGAAAGAACGGACACATTTCACCGTCCGCCTGA CCCCATAGCGAAAGAACGGACACGTTTCACCGTCCGCCTGA < 41bp 0.521037509003051 0.758727657734773 0.054025352 0.26326802 prediction 0.475380297463445 Functional Gain - MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79673973 chr17:79673976 nonsynonymous SNV 0.898 1 24 hm5C_associated_SNPs_112120 0 0 1 0 2 MRPL12 chr17:79673936 3'AG 79673936 Downstream 41bp
chr17 79673976 79673976 1 + A G GBM 79673973 + 79673953 79673993 41 CCCCATAGCGAAAGAACGGACACATTTCACCGTCCGCCTGA CCCCATAGCGAAAGAACGGACACGTTTCACCGTCCGCCTGA < 41bp 0.521037509003051 0.758727657734773 0.054025352 0.26326802 prediction 0.475380297463445 Functional Gain - MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79673973 chr17:79673976 nonsynonymous SNV 0.898 1 24 hm5C_associated_SNPs_112120 0 0 1 0 2 MRPL12 chr17:79674070 5'GT 79674070 Upstream 95bp
chr6 41309776 41309776 1 + C T LAML 41309775 + 41309755 41309795 41 CTGTCCCTCTGCCTTCCAGGCCACAGAACTCCACGCTCCGC CTGTCCCTCTGCCTTCCAGGCTACAGAACTCCACGCTCCGC < 41bp 0.535137896603971 0.77281777890286 0.18541774 0.28207833 prediction 0.475359764597777 Functional Gain - NCR2 ENSG00000096264 CDS Human protein_coding chr6:41309775 chr6:41309776 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_112122 0 0 0 0 2 NCR2 chr6:41309738 3'AG 41309738 Downstream 39bp
chr6 41309776 41309776 1 + C T LAML 41309775 + 41309755 41309795 41 CTGTCCCTCTGCCTTCCAGGCCACAGAACTCCACGCTCCGC CTGTCCCTCTGCCTTCCAGGCTACAGAACTCCACGCTCCGC < 41bp 0.535137896603971 0.77281777890286 0.18541774 0.28207833 prediction 0.475359764597777 Functional Gain - NCR2 ENSG00000096264 CDS Human protein_coding chr6:41309775 chr6:41309776 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_112122 0 0 0 0 2 NCR2 chr6:41309774 3'AG 41309774 Downstream 3bp
chr16 28845928 28845928 1 + C G OV 28845924 + 28845904 28845944 41 GGCCCGCCTCTGGTGGCTGCCACGCCCTATTCTTCCTACAT GGCCCGCCTCTGGTGGCTGCCACGGCCTATTCTTCCTACAT < 41bp 0.455036955594212 0.737679617966379 0.07987404 0.27898037 prediction 0.475359235932759 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28845924 chr16:28845928 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_112123 0 0 1 0 1 ATXN2L chr16:28846014 5'GT 28846014 Upstream 87bp
chr2 44066243 44066243 1 + C A rs72647316 44066239 + 44066219 44066259 41 AGGGCTGCCGAAAGGGGCCACTCCCCAGGATACCTCGGTGA AGGGCTGCCGAAAGGGGCCACTCCACAGGATACCTCGGTGA < 41bp 0.324740963049219 0.737673273072035 0.036462724 0.9475246 prediction 0.47534654614407 Functional Gain - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44066239 chr2:44066243 synonymous SNV . 0 25 hm5C_associated_SNPs_112126 1 0 1 0 1 ABCG8 chr2:44066255 5'GT 44066255 Upstream 13bp
chr11 63962046 63962046 1 + C T UCEC 63962045 + 63962025 63962065 41 CTACTCAGTGATCCTACCTACCGGGAGCTGATAGAGCAGCT CTACTCAGTGATCCTACCTACTGGGAGCTGATAGAGCAGCT < 41bp 0.488284488333274 0.737670903909498 0.8536627 0.6354687 prediction 0.475341807818997 Functional Gain - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63962045 chr11:63962046 nonsynonymous SNV 0.991 1 22 hm5C_associated_SNPs_112127 0 0 1 0 2 STIP1 chr11:63961951 3'AG 63961951 Downstream 96bp
chr11 63962046 63962046 1 + C T UCEC 63962045 + 63962025 63962065 41 CTACTCAGTGATCCTACCTACCGGGAGCTGATAGAGCAGCT CTACTCAGTGATCCTACCTACTGGGAGCTGATAGAGCAGCT < 41bp 0.488284488333274 0.737670903909498 0.8536627 0.6354687 prediction 0.475341807818997 Functional Gain - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63962045 chr11:63962046 nonsynonymous SNV 0.991 1 22 hm5C_associated_SNPs_112127 0 0 1 0 2 STIP1 chr11:63962092 5'GT 63962092 Upstream 47bp
chr12 124221681 124221681 1 + C T SKCM 124221680 + 124221660 124221700 41 TCTGTCTACAGCCGTGTGATCCAGGTGAAGAAAATGAAGGC TCTGTCTACAGCCGTGTGATCTAGGTGAAGAAAATGAAGGC < 41bp 0.527086158713784 0.764749197603483 0.924407 0.68683255 prediction 0.475326077779399 Functional Gain - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124221680 chr12:124221681 stopgain 0.904 1 22 hm5C_associated_SNPs_112132 0 0 1 0 1 ATP6V0A2 chr12:124221606 3'AG 124221606 Downstream 76bp
chr1 45101831 45101831 1 + C T LUSC 45101830 + 45101810 45101850 41 ACTCTCCTGGAAGGTGGCTTCCGAGGTACAAGCAGCTGACA ACTCTCCTGGAAGGTGGCTTCTGAGGTACAAGCAGCTGACA < 41bp 0.519285338036124 0.756946949400801 0.89242816 0.47094917 prediction 0.475323222729353 Functional Gain - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45101830 chr1:45101831 stopgain 1.000 1 22 hm5C_associated_SNPs_112133 0 0 1 0 1 RNF220 chr1:45101834 5'GT 45101834 Upstream 4bp
chr15 89414673 89414673 1 + C T SKCM 89414672 + 89414652 89414692 41 GCCACTGTTACCGCCACTTCCCGGACCGCGAGACCTGGGTG GCCACTGTTACCGCCACTTCCTGGACCGCGAGACCTGGGTG < 41bp 0.534206174303287 0.771865424899528 0.37846118 0.27678022 prediction 0.475318501192481 Functional Gain - ACAN ENSG00000157766 CDS Human protein_coding chr15:89414672 chr15:89414673 nonsynonymous SNV 0.906 2 22 hm5C_associated_SNPs_112134 0 0 0 0 2 ACAN chr15:89414613 3'AG 89414613 Downstream 61bp
chr15 89414673 89414673 1 + C T SKCM 89414672 + 89414652 89414692 41 GCCACTGTTACCGCCACTTCCCGGACCGCGAGACCTGGGTG GCCACTGTTACCGCCACTTCCTGGACCGCGAGACCTGGGTG < 41bp 0.534206174303287 0.771865424899528 0.37846118 0.27678022 prediction 0.475318501192481 Functional Gain - ACAN ENSG00000157766 CDS Human protein_coding chr15:89414672 chr15:89414673 nonsynonymous SNV 0.906 2 22 hm5C_associated_SNPs_112134 0 0 0 0 2 ACAN chr15:89414771 5'GT 89414771 Upstream 99bp
chrY 15028313 15028313 1 + C A HNSC 15028312 + 15028292 15028332 41 GATCGAGAGGAGGCCCTTCACCAGTTTCGCTCAGGAAAAAG GATCGAGAGGAGGCCCTTCACAAGTTTCGCTCAGGAAAAAG < 41bp 0.543349918430516 0.780991522535533 0.07404259 0.153586 prediction 0.475283208210035 Functional Gain - DDX3Y ENSG00000067048 CDS Human protein_coding chrY:15028312 chrY:15028313 nonsynonymous SNV 0.922 0 22 hm5C_associated_SNPs_112137 0 0 1 0 1 DDX3Y chrY:15028354 5'GT 15028354 Upstream 42bp
chr16 2870998 2870998 1 + T C LIHC 2870996 + 2870976 2871016 41 CTCCAGGAAGTTCAGGTCGCCATCATAAACAACTCTATGTG CTCCAGGAAGTTCAGGTCGCCACCATAAACAACTCTATGTG < 41bp 0.462221799771491 0.737632365990918 0.05859363 0.14923322 prediction 0.475264731981835 Functional Gain - PRSS21 ENSG00000007038 CDS Human protein_coding chr16:2870996 chr16:2870998 nonsynonymous SNV 0.095 3 23 hm5C_associated_SNPs_112139 0 0 1 0 3 PRSS21 chr16:2870956 3'AG 2870956 Downstream 43bp
chr16 2870998 2870998 1 + T C LIHC 2870996 + 2870976 2871016 41 CTCCAGGAAGTTCAGGTCGCCATCATAAACAACTCTATGTG CTCCAGGAAGTTCAGGTCGCCACCATAAACAACTCTATGTG < 41bp 0.462221799771491 0.737632365990918 0.05859363 0.14923322 prediction 0.475264731981835 Functional Gain - PRSS21 ENSG00000007038 CDS Human protein_coding chr16:2870996 chr16:2870998 nonsynonymous SNV 0.095 3 23 hm5C_associated_SNPs_112139 0 0 1 0 3 PRSS21 chr16:2870982 3'AG 2870982 Downstream 17bp
chr16 2870998 2870998 1 + T C LIHC 2870996 + 2870976 2871016 41 CTCCAGGAAGTTCAGGTCGCCATCATAAACAACTCTATGTG CTCCAGGAAGTTCAGGTCGCCACCATAAACAACTCTATGTG < 41bp 0.462221799771491 0.737632365990918 0.05859363 0.14923322 prediction 0.475264731981835 Functional Gain - PRSS21 ENSG00000007038 CDS Human protein_coding chr16:2870996 chr16:2870998 nonsynonymous SNV 0.095 3 23 hm5C_associated_SNPs_112139 0 0 1 0 3 PRSS21 chr16:2871068 5'GT 2871068 Upstream 71bp
chr17 40940793 40940793 1 + C A LUSC 40940792 + 40940772 40940812 41 TTGATCTGGATGGGGACAGCCCGGAAGAGATTGCAGCTGCC TTGATCTGGATGGGGACAGCCAGGAAGAGATTGCAGCTGCC < 41bp 0.482030132265435 0.737630653220528 0.45217365 0.88098943 prediction 0.475261306441057 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40940792 chr17:40940793 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_112142 0 0 1 0 2 WNK4 chr17:40940699 3'AG 40940699 Downstream 95bp
chr17 40940793 40940793 1 + C A LUSC 40940792 + 40940772 40940812 41 TTGATCTGGATGGGGACAGCCCGGAAGAGATTGCAGCTGCC TTGATCTGGATGGGGACAGCCAGGAAGAGATTGCAGCTGCC < 41bp 0.482030132265435 0.737630653220528 0.45217365 0.88098943 prediction 0.475261306441057 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40940792 chr17:40940793 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_112142 0 0 1 0 2 WNK4 chr17:40940815 5'GT 40940815 Upstream 23bp
chr5 176793263 176793263 1 + C A COAD 176793259 + 176793239 176793279 41 CCACAGCCTCCCCAGTGGTCCCAGCAGCCCCTTCCCAACCG CCACAGCCTCCCCAGTGGTCCCAGAAGCCCCTTCCCAACCG < 41bp 0.334283255840345 0.737624378837314 0.14005381 0.2524939 prediction 0.475248757674627 Functional Gain - RGS14 ENSG00000169220 CDS Human protein_coding chr5:176793259 chr5:176793263 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_112143 0 0 0 0 2 RGS14 chr5:176793178 3'AG 176793178 Downstream 86bp
chr5 176793263 176793263 1 + C A COAD 176793259 + 176793239 176793279 41 CCACAGCCTCCCCAGTGGTCCCAGCAGCCCCTTCCCAACCG CCACAGCCTCCCCAGTGGTCCCAGAAGCCCCTTCCCAACCG < 41bp 0.334283255840345 0.737624378837314 0.14005381 0.2524939 prediction 0.475248757674627 Functional Gain - RGS14 ENSG00000169220 CDS Human protein_coding chr5:176793259 chr5:176793263 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_112143 0 0 0 0 2 RGS14 chr5:176793356 5'GT 176793356 Upstream 94bp
chr20 45702822 45702822 1 + C A LUSC 45702821 + 45702801 45702841 41 ATCCTTCCTACCCCGGCTTCCCCCAGAGCCAGTACCCCCAG ATCCTTCCTACCCCGGCTTCCACCAGAGCCAGTACCCCCAG < 41bp 0.556293843170154 0.793910669636833 0.13987598 0.3299182 prediction 0.475233652933359 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45702821 chr20:45702822 nonsynonymous SNV 0.979 2 22 hm5C_associated_SNPs_112146 0 0 0 0 1 EYA2 chr20:45702797 3'AG 45702797 Downstream 26bp
chr9 35800407 35800407 1 + T C UCEC 35800405 + 35800385 35800425 41 GGTGTAACTGGGCTGGTTGTCATGGACAAGAACAATGACCG GGTGTAACTGGGCTGGTTGTCACGGACAAGAACAATGACCG < 41bp 0.566367577290254 0.80397107787969 0.84221274 0.84764665 prediction 0.475207001178871 Functional Gain - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35800405 chr9:35800407 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_112148 0 0 1 0 2 NPR2 chr9:35800386 3'AG 35800386 Downstream 22bp
chr9 35800407 35800407 1 + T C UCEC 35800405 + 35800385 35800425 41 GGTGTAACTGGGCTGGTTGTCATGGACAAGAACAATGACCG GGTGTAACTGGGCTGGTTGTCACGGACAAGAACAATGACCG < 41bp 0.566367577290254 0.80397107787969 0.84221274 0.84764665 prediction 0.475207001178871 Functional Gain - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35800405 chr9:35800407 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_112148 0 0 1 0 2 NPR2 chr9:35800480 5'GT 35800480 Upstream 74bp
chr19 54137925 54137925 1 + C A LUSC 54137924 + 54137904 54137944 41 GCCTCGAAAATAGACATACACCCAACAGTACTGCAGGTTGG GCCTCGAAAATAGACATACACACAACAGTACTGCAGGTTGG < 41bp 0.560866823041531 0.798469980934789 0.027676284 0.04465106 prediction 0.475206315786515 Functional Gain - DPRX ENSG00000204595 CDS Human protein_coding chr19:54137924 chr19:54137925 nonsynonymous SNV 0.006 2 22 hm5C_associated_SNPs_112149 0 0 0 0 1 DPRX chr19:54137939 5'GT 54137939 Upstream 15bp
chr2 144008151 144008151 1 + C A COAD 144008147 + 144008127 144008167 41 TGAATGGGCCAAGGAAAAATCGAGCAGAAAGAATGTCTTTC TGAATGGGCCAAGGAAAAATCGAGAAGAAAGAATGTCTTTC < 41bp 0.360845113621792 0.737600452033275 0.42856205 0.75503933 prediction 0.475200904066551 Functional Gain - ARHGAP15 ENSG00000075884 CDS Human protein_coding chr2:144008147 chr2:144008151 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_112151 0 0 0 0 2 ARHGAP15 chr2:144008080 3'AG 144008080 Downstream 72bp
chr2 144008151 144008151 1 + C A COAD 144008147 + 144008127 144008167 41 TGAATGGGCCAAGGAAAAATCGAGCAGAAAGAATGTCTTTC TGAATGGGCCAAGGAAAAATCGAGAAGAAAGAATGTCTTTC < 41bp 0.360845113621792 0.737600452033275 0.42856205 0.75503933 prediction 0.475200904066551 Functional Gain - ARHGAP15 ENSG00000075884 CDS Human protein_coding chr2:144008147 chr2:144008151 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_112151 0 0 0 0 2 ARHGAP15 chr2:144008169 5'GT 144008169 Upstream 19bp
chr17 46925443 46925443 1 + C T SKCM 46925442 + 46925422 46925462 41 GCAGGTGGGGTGGAAGACAACCCGTGAGTATTACACCTTCA GCAGGTGGGGTGGAAGACAACTCGTGAGTATTACACCTTCA < 41bp 0.533273801439921 0.77086702590174 0.12543535 0.17215377 prediction 0.475186448923637 Functional Gain - CALCOCO2 ENSG00000136436 CDS Human protein_coding chr17:46925442 chr17:46925443 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_112152 0 0 1 0 2 CALCOCO2 chr17:46925426 3'AG 46925426 Downstream 18bp
chr17 46925443 46925443 1 + C T SKCM 46925442 + 46925422 46925462 41 GCAGGTGGGGTGGAAGACAACCCGTGAGTATTACACCTTCA GCAGGTGGGGTGGAAGACAACTCGTGAGTATTACACCTTCA < 41bp 0.533273801439921 0.77086702590174 0.12543535 0.17215377 prediction 0.475186448923637 Functional Gain - CALCOCO2 ENSG00000136436 CDS Human protein_coding chr17:46925442 chr17:46925443 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_112152 0 0 1 0 2 CALCOCO2 chr17:46925528 5'GT 46925528 Upstream 86bp
chr19 18976574 18976574 1 + C T LUSC 18976573 + 18976553 18976593 41 GCCAGCCCGGCCTCTCCCAGCCGGAGCTGTCCCAGGTGAGC GCCAGCCCGGCCTCTCCCAGCTGGAGCTGTCCCAGGTGAGC < 41bp 0.529780667557628 0.767356329385559 0.40808013 0.2610228 prediction 0.47515132365586 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18976573 chr19:18976574 nonsynonymous SNV 0.952 2 22 hm5C_associated_SNPs_112153 0 0 1 0 1 UPF1 chr19:18976587 5'GT 18976587 Upstream 14bp
chr11 67173091 67173091 1 + C T SARC 67173090 + 67173070 67173110 41 TGGCAGAGGCCCCTGGAGACCCACAGTGGATGGAGACCATT TGGCAGAGGCCCCTGGAGACCTACAGTGGATGGAGACCATT < 41bp 0.48219590500009 0.737566452615869 0.26145852 0.8998391 prediction 0.475132905231738 Functional Gain - TBC1D10C ENSG00000175463 CDS Human protein_coding chr11:67173090 chr11:67173091 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_112157 0 0 0 0 2 TBC1D10C chr11:67173066 3'AG 67173066 Downstream 26bp
chr11 67173091 67173091 1 + C T SARC 67173090 + 67173070 67173110 41 TGGCAGAGGCCCCTGGAGACCCACAGTGGATGGAGACCATT TGGCAGAGGCCCCTGGAGACCTACAGTGGATGGAGACCATT < 41bp 0.48219590500009 0.737566452615869 0.26145852 0.8998391 prediction 0.475132905231738 Functional Gain - TBC1D10C ENSG00000175463 CDS Human protein_coding chr11:67173090 chr11:67173091 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_112157 0 0 0 0 2 TBC1D10C chr11:67173172 5'GT 67173172 Upstream 82bp
chr1 11716013 11716013 1 + A G STAD 11716010 + 11715990 11716030 41 TCTGCAGCCTCTGGCGGGACCTCATCGACCTCGTGACCCTC TCTGCAGCCTCTGGCGGGACCTCGTCGACCTCGTGACCCTC < 41bp 0.498096799051525 0.737566436775185 0.021763563 0.015700012 prediction 0.475132873550369 Functional Gain - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11716010 chr1:11716013 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_112158 0 0 0 0 1 FBXO44 chr1:11715997 3'AG 11715997 Downstream 17bp
chr17 38241000 38241000 1 + A G rs118191745 38240997 + 38240977 38241017 41 CTGAAGAGTGGGATCTGATCCACATTGCCACAGAGGCCCAT CTGAAGAGTGGGATCTGATCCACGTTGCCACAGAGGCCCAT < 41bp 0.493765814922667 0.737566041336436 0.32239294 0.79789543 prediction 0.475132082672872 Functional Gain - THRA ENSG00000126351 CDS Human protein_coding chr17:38240997 chr17:38241000 nonsynonymous SNV 0.983 1 24 hm5C_associated_SNPs_112159 0 0 1 0 1 THRA chr17:38241068 5'GT 38241068 Upstream 69bp
chr17 74465781 74465781 1 + T C rs141360557 74465779 + 74465759 74465799 41 CTGCACAGGTCTGGGGGCCACATAGCCCACCTGCATGTGCT CTGCACAGGTCTGGGGGCCACACAGCCCACCTGCATGTGCT < 41bp 0.499582756997299 0.737561300613145 0.24785161 0.22134963 prediction 0.47512260122629 Functional Gain - AANAT ENSG00000129673 CDS Human protein_coding chr17:74465779 chr17:74465781 nonsynonymous SNV 0.864 0 23 hm5C_associated_SNPs_112161 0 0 0 1 1 AANAT chr17:74465747 3'AG 74465747 Downstream 35bp
chr19 42383213 42383213 1 + C T SKCM 42383212 + 42383192 42383232 41 ATGGCAACTACACGTGGCCCCCTGAGTTCTTGGGCCCGGGC ATGGCAACTACACGTGGCCCCTTGAGTTCTTGGGCCCGGGC < 41bp 0.498543742828978 0.737560539411839 0.04750535 0.065727144 prediction 0.475121078823677 Functional Gain - CD79A ENSG00000105369 CDS Human protein_coding chr19:42383212 chr19:42383213 nonsynonymous SNV 0.005 0 22 hm5C_associated_SNPs_112162 0 0 0 0 1 CD79A chr19:42383245 5'GT 42383245 Upstream 33bp
chr11 17388832 17388832 1 + C A rs11024269 17388828 + 17388808 17388848 41 TCTACCAGTGTGTGGTACGGCATGCGTCCTTGCATACCCCC TCTACCAGTGTGTGGTACGGCATGAGTCCTTGCATACCCCC < 41bp 0.329468504016661 0.737557755763375 0.5659859 0.4952037 prediction 0.47511551152675 Functional Gain - NCR3LG1 ENSG00000188211 CDS Human protein_coding chr11:17388828 chr11:17388832 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_112164 0 0 1 0 1 NCR3LG1 chr11:17388894 5'GT 17388894 Upstream 63bp
chr4 169099089 169099089 1 + C A rs114585401 169099085 + 169099065 169099105 41 AAGACGGGGGAGCACAAAACCATGCTGCAAATGATCCTGTG AAGACGGGGGAGCACAAAACCATGATGCAAATGATCCTGTG < 41bp 0.689752770816133 0.927304321430388 0.2365225 0.38673085 prediction 0.47510310122851 Functional Gain - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169099085 chr4:169099089 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_112168 0 0 0 0 2 ANXA10 chr4:169099041 3'AG 169099041 Downstream 49bp
chr4 169099089 169099089 1 + C A rs114585401 169099085 + 169099065 169099105 41 AAGACGGGGGAGCACAAAACCATGCTGCAAATGATCCTGTG AAGACGGGGGAGCACAAAACCATGATGCAAATGATCCTGTG < 41bp 0.689752770816133 0.927304321430388 0.2365225 0.38673085 prediction 0.47510310122851 Functional Gain - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169099085 chr4:169099089 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_112168 0 0 0 0 2 ANXA10 chr4:169099134 5'GT 169099134 Upstream 46bp
chr10 126662852 126662852 1 + C A UCEC 126662851 + 126662831 126662871 41 CGACTGTATGCACTTTGGAACCGGACTGCAGGAGACTGCCT CGACTGTATGCACTTTGGAACAGGACTGCAGGAGACTGCCT < 41bp 0.543985655340755 0.781535080867512 0.2652328 0.3990156 prediction 0.475098851053514 Functional Gain - ZRANB1 ENSG00000019995 CDS Human protein_coding chr10:126662851 chr10:126662852 synonymous SNV . 0 22 hm5C_associated_SNPs_112169 0 0 1 0 1 ZRANB1 chr10:126662769 3'AG 126662769 Downstream 84bp
chr15 75094676 75094676 1 + T C STAD 75094674 + 75094654 75094694 41 GCCTCCCCCTGGCCACAGCCCCTGAAGGACGTCGTCCCTCG GCCTCCCCCTGGCCACAGCCCCCGAAGGACGTCGTCCCTCG < 41bp 0.477028883374731 0.737541785336573 0.27329373 0.29841325 prediction 0.475083570673146 Functional Gain - CSK ENSG00000103653 CDS Human protein_coding chr15:75094674 chr15:75094676 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_112172 0 0 1 0 1 CSK chr15:75094672 3'AG 75094672 Downstream 5bp
chr3 158364696 158364696 1 + C A LIHC 158364695 + 158364675 158364715 41 ACTTTTATTAACAAATTGGACCGAATGGGCTCCAACCCAGC ACTTTTATTAACAAATTGGACAGAATGGGCTCCAACCCAGC < 41bp 0.491811045871544 0.737541126891943 0.08685237 0.121771604 prediction 0.475082253783886 Functional Gain - GFM1 ENSG00000168827 CDS Human protein_coding chr3:158364695 chr3:158364696 synonymous SNV . 0 22 hm5C_associated_SNPs_112173 0 0 1 0 1 GFM1 chr3:158364736 5'GT 158364736 Upstream 41bp
chr11 111839270 111839270 1 + C T SKCM 111839269 + 111839249 111839289 41 TGAGTGGGGTACAGCTGAGTCCCGGTAACCAACAGGAGATG TGAGTGGGGTACAGCTGAGTCTCGGTAACCAACAGGAGATG < 41bp 0.483158695715706 0.737538911486999 0.38903594 0.22506002 prediction 0.475077822973997 Functional Gain - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111839269 chr11:111839270 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_112174 0 0 1 0 2 DIXDC1 chr11:111839237 3'AG 111839237 Downstream 34bp
chr11 111839270 111839270 1 + C T SKCM 111839269 + 111839249 111839289 41 TGAGTGGGGTACAGCTGAGTCCCGGTAACCAACAGGAGATG TGAGTGGGGTACAGCTGAGTCTCGGTAACCAACAGGAGATG < 41bp 0.483158695715706 0.737538911486999 0.38903594 0.22506002 prediction 0.475077822973997 Functional Gain - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111839269 chr11:111839270 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_112174 0 0 1 0 2 DIXDC1 chr11:111839362 5'GT 111839362 Upstream 93bp
chr9 127975692 127975692 1 + C T SKCM 127975691 + 127975671 127975711 41 TACCTGCAAGGGCCTCTTGCCCCGGTATGAACATGCTAGCT TACCTGCAAGGGCCTCTTGCCTCGGTATGAACATGCTAGCT < 41bp 0.556246280451762 0.793783545189123 0.19153017 0.19780695 prediction 0.475074529474723 Functional Gain - RABEPK ENSG00000136933 CDS Human protein_coding chr9:127975691 chr9:127975692 synonymous SNV . 0 22 hm5C_associated_SNPs_112176 0 0 1 0 1 RABEPK chr9:127975649 3'AG 127975649 Downstream 44bp
chr16 20435364 20435364 1 + C A LUSC 20435363 + 20435343 20435383 41 CATTTTTGTGCATGAGCTGCCCCGAGTTGATGCCAAAGTTA CATTTTTGTGCATGAGCTGCCACGAGTTGATGCCAAAGTTA < 41bp 0.563545015437241 0.801082048057133 0.06346536 0.21215364 prediction 0.475074065239784 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20435363 chr16:20435364 synonymous SNV . 0 22 hm5C_associated_SNPs_112177 0 0 1 0 1 ACSM5 chr16:20435391 5'GT 20435391 Upstream 28bp
chr14 100404167 100404167 1 + C A COAD 100404163 + 100404143 100404183 41 GCTTTTTGCAGGGGTTCCCTCTGCCTGTAAGCAAGTCGTAA GCTTTTTGCAGGGGTTCCCTCTGCATGTAAGCAAGTCGTAA < 41bp 0.31115136738263 0.73753560200969 0.4522095 0.8847819 prediction 0.475071204019381 Functional Gain - EML1 ENSG00000066629 CDS Human protein_coding chr14:100404163 chr14:100404167 synonymous SNV . 0 25 hm5C_associated_SNPs_112178 0 0 1 0 2 EML1 chr14:100404154 3'AG 100404154 Downstream 14bp
chr14 100404167 100404167 1 + C A COAD 100404163 + 100404143 100404183 41 GCTTTTTGCAGGGGTTCCCTCTGCCTGTAAGCAAGTCGTAA GCTTTTTGCAGGGGTTCCCTCTGCATGTAAGCAAGTCGTAA < 41bp 0.31115136738263 0.73753560200969 0.4522095 0.8847819 prediction 0.475071204019381 Functional Gain - EML1 ENSG00000066629 CDS Human protein_coding chr14:100404163 chr14:100404167 synonymous SNV . 0 25 hm5C_associated_SNPs_112178 0 0 1 0 2 EML1 chr14:100404249 5'GT 100404249 Upstream 83bp
chr19 14674655 14674655 1 + C T UCEC 14674654 + 14674634 14674674 41 GGATGTTCTGCAGAAGCTGCCCGTGGGCACCACGGCCACAC GGATGTTCTGCAGAAGCTGCCTGTGGGCACCACGGCCACAC < 41bp 0.516031914191422 0.753567474126722 0.426778 0.2547564 prediction 0.4750711198706 Functional Gain - TECR ENSG00000099797 CDS Human protein_coding chr19:14674654 chr19:14674655 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_112179 0 0 1 0 2 TECR chr19:14674612 3'AG 14674612 Downstream 44bp
chr19 14674655 14674655 1 + C T UCEC 14674654 + 14674634 14674674 41 GGATGTTCTGCAGAAGCTGCCCGTGGGCACCACGGCCACAC GGATGTTCTGCAGAAGCTGCCTGTGGGCACCACGGCCACAC < 41bp 0.516031914191422 0.753567474126722 0.426778 0.2547564 prediction 0.4750711198706 Functional Gain - TECR ENSG00000099797 CDS Human protein_coding chr19:14674654 chr19:14674655 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_112179 0 0 1 0 2 TECR chr19:14674715 5'GT 14674715 Upstream 61bp
chr19 39398083 39398083 1 + C A HNSC 39398082 + 39398062 39398102 41 CCTTCATTTGGCAGTGGAGGCCCAGGCAGCCGATGTGCTGG CCTTCATTTGGCAGTGGAGGCACAGGCAGCCGATGTGCTGG < 41bp 0.549545954078616 0.787074295343276 0.3317784 0.46377784 prediction 0.47505668252932 Functional Gain - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39398082 chr19:39398083 synonymous SNV . 0 22 hm5C_associated_SNPs_112182 0 0 1 0 1 NFKBIB chr19:39398039 3'AG 39398039 Downstream 45bp
chr8 54852180 54852180 1 + C T COAD 54852179 + 54852159 54852199 41 GATGCGGAAGCGGCAGATGCCCGCCGCCCAGGACACACCAG GATGCGGAAGCGGCAGATGCCTGCCGCCCAGGACACACCAG < 41bp 0.499101618173362 0.737503904049526 0.12624523 0.100508034 prediction 0.475007808099052 Functional Gain - RGS20 ENSG00000147509 CDS Human protein_coding chr8:54852179 chr8:54852180 synonymous SNV . 0 22 hm5C_associated_SNPs_112188 0 0 0 0 1 RGS20 chr8:54852136 3'AG 54852136 Downstream 45bp
chr11 122720874 122720874 1 + C A LUAD 122720873 + 122720853 122720893 41 CTGAGGAAGAACTCCTCCCTCCAGTGGCTGACCCCCTCAGG CTGAGGAAGAACTCCTCCCTCAAGTGGCTGACCCCCTCAGG < 41bp 0.569575553255305 0.80706688187061 0.77737004 0.6152385 prediction 0.47498265723061 Functional Gain - CRTAM ENSG00000109943 CDS Human protein_coding chr11:122720873 chr11:122720874 nonsynonymous SNV 0.534 4 22 hm5C_associated_SNPs_112195 0 0 0 0 2 CRTAM chr11:122720776 3'AG 122720776 Downstream 99bp
chr11 122720874 122720874 1 + C A LUAD 122720873 + 122720853 122720893 41 CTGAGGAAGAACTCCTCCCTCCAGTGGCTGACCCCCTCAGG CTGAGGAAGAACTCCTCCCTCAAGTGGCTGACCCCCTCAGG < 41bp 0.569575553255305 0.80706688187061 0.77737004 0.6152385 prediction 0.47498265723061 Functional Gain - CRTAM ENSG00000109943 CDS Human protein_coding chr11:122720873 chr11:122720874 nonsynonymous SNV 0.534 4 22 hm5C_associated_SNPs_112195 0 0 0 0 2 CRTAM chr11:122720922 5'GT 122720922 Upstream 49bp
chr1 182845222 182845222 1 + C T SKCM 182845221 + 182845201 182845241 41 TCTGTGGTGATGAATATGGTCCAGAAACAAGGTTGAGCATG TCTGTGGTGATGAATATGGTCTAGAAACAAGGTTGAGCATG < 41bp 0.512449397998226 0.749932587128442 0.015833467 0.08696255 prediction 0.474966378260431 Functional Gain - DHX9 ENSG00000135829 CDS Human protein_coding chr1:182845221 chr1:182845222 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_112199 0 0 1 0 1 DHX9 chr1:182845185 3'AG 182845185 Downstream 38bp
chr9 133943614 133943614 1 + C T COAD 133943613 + 133943593 133943633 41 CTCCAGCCTGGGAGGGGCTGCCGGAGGTAGGTAGGGTGAGA CTCCAGCCTGGGAGGGGCTGCTGGAGGTAGGTAGGGTGAGA < 41bp 0.497685429273386 0.737470381920023 0.9159337 0.8293744 prediction 0.474940763840046 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133943613 chr9:133943614 nonsynonymous SNV 0.970 2 22 hm5C_associated_SNPs_112201 0 0 0 0 1 LAMC3 chr9:133943618 5'GT 133943618 Upstream 5bp
chr3 100071332 100071332 1 + C A rs112096266 100071331 + 100071311 100071351 41 TGTTGCCTGGGGACACAGCACCGTGGTGAACCCTTGGTGAG TGTTGCCTGGGGACACAGCACAGTGGTGAACCCTTGGTGAG < 41bp 0.545370354324367 0.782830083664875 0.18395442 0.23979917 prediction 0.474919458681015 Functional Gain - NIT2 ENSG00000114021 CDS Human protein_coding chr3:100071331 chr3:100071332 synonymous SNV . 0 22 hm5C_associated_SNPs_112205 0 0 1 0 2 NIT2 chr3:100071248 3'AG 100071248 Downstream 85bp
chr3 100071332 100071332 1 + C A rs112096266 100071331 + 100071311 100071351 41 TGTTGCCTGGGGACACAGCACCGTGGTGAACCCTTGGTGAG TGTTGCCTGGGGACACAGCACAGTGGTGAACCCTTGGTGAG < 41bp 0.545370354324367 0.782830083664875 0.18395442 0.23979917 prediction 0.474919458681015 Functional Gain - NIT2 ENSG00000114021 CDS Human protein_coding chr3:100071331 chr3:100071332 synonymous SNV . 0 22 hm5C_associated_SNPs_112205 0 0 1 0 2 NIT2 chr3:100071346 5'GT 100071346 Upstream 15bp
chr9 12694344 12694344 1 + C A UCEC 12694340 + 12694320 12694360 41 CAACTGTGGGACGTGCCGTCCTGGCTGGAGAGGAGCTGCCT CAACTGTGGGACGTGCCGTCCTGGATGGAGAGGAGCTGCCT < 41bp 0.694058298850306 0.931507734473679 0.35021785 0.7112893 prediction 0.474898871246745 Functional Gain - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12694340 chr9:12694344 synonymous SNV . 0 25 hm5C_associated_SNPs_112207 0 0 0 0 1 TYRP1 chr9:12694381 5'GT 12694381 Upstream 38bp
chr12 113314465 113314465 1 + C A UCEC 113314464 + 113314444 113314484 41 CAGAGGTGGCTCCGAGCGACCCTGGGACCACTGCCCCACCC CAGAGGTGGCTCCGAGCGACCATGGGACCACTGCCCCACCC < 41bp 0.481100780734083 0.737441722716194 0.52333355 0.46831098 prediction 0.474883445432389 Functional Gain - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113314464 chr12:113314465 nonsynonymous SNV 0.013 1 22 hm5C_associated_SNPs_112211 0 0 0 0 1 RPH3A chr12:113314447 3'AG 113314447 Downstream 19bp
chr10 116603678 116603678 1 + T C STAD 116603676 + 116603656 116603696 41 GATCCGTTAGATATTGAAACCGTGGAAGCAATTAACTGGGG GATCCGTTAGATATTGAAACCGCGGAAGCAATTAACTGGGG < 41bp 0.569887685520589 0.807320091482812 0.36987925 0.3841753 prediction 0.474864811924447 Functional Gain - FAM160B1 ENSG00000151553 CDS Human protein_coding chr10:116603676 chr10:116603678 nonsynonymous SNV 0.976 1 23 hm5C_associated_SNPs_112214 0 0 1 0 1 FAM160B1 chr10:116603696 5'GT 116603696 Upstream 19bp
chr14 105905056 105905056 1 + A G UCEC 105905053 + 105905033 105905073 41 CCAGCAACCCATACCTGATCCGGAGAATCGAGGAGCTCAAC CCAGCAACCCATACCTGATCCGGGGAATCGAGGAGCTCAAC < 41bp 0.505923478944014 0.743351808887147 0.9369503 0.95531285 prediction 0.474856659886265 Functional Gain - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105905053 chr14:105905056 nonsynonymous SNV 0.856 5 24 hm5C_associated_SNPs_112215 0 0 1 0 1 MTA1 chr14:105905076 5'GT 105905076 Upstream 21bp
chr11 86048462 86048462 1 + C T UCEC 86048461 + 86048441 86048481 41 TTTGGAGCCATGAATATTGTCCGAACTCCATCTGTTGCTCA TTTGGAGCCATGAATATTGTCTGAACTCCATCTGTTGCTCA < 41bp 0.492425503257676 0.737423639990291 0.12911743 0.07199508 prediction 0.474847279980581 Functional Gain - HIKESHI ENSG00000149196 CDS Human protein_coding chr11:86048461 chr11:86048462 stopgain 1.000 0 22 hm5C_associated_SNPs_112218 0 0 0 0 1 HIKESHI chr11:86048421 3'AG 86048421 Downstream 42bp
chr19 16192750 16192750 1 + C T UCEC 16192749 + 16192729 16192769 41 GGTGATGTGGCCGCCCTCAACCGACGCATCCAGCTCGTTGA GGTGATGTGGCCGCCCTCAACTGACGCATCCAGCTCGTTGA < 41bp 0.522764747906416 0.760184906158226 0.43740305 0.19019327 prediction 0.47484031650362 Functional Gain - TPM4 ENSG00000167460 CDS Human protein_coding chr19:16192749 chr19:16192750 stopgain 0.993 0 22 hm5C_associated_SNPs_112219 0 0 1 0 1 TPM4 chr19:16192723 3'AG 16192723 Downstream 28bp
chr5 54701366 54701366 1 + T A KIRC 54701362 + 54701342 54701382 41 TTTAAGAAGGTTGGGATTTGCTACTTCTTCTGATGTAATAG TTTAAGAAGGTTGGGATTTGCTACATCTTCTGATGTAATAG < 41bp 0.397489100541406 0.737412194772997 0.15473932 0.514654 prediction 0.474824389545994 Functional Gain - SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54701362 chr5:54701366 synonymous SNV . 0 25 hm5C_associated_SNPs_112222 0 0 1 0 1 SKIV2L2 chr5:54701416 5'GT 54701416 Upstream 51bp
chr12 56625337 56625337 1 + C T SKCM 56625336 + 56625316 56625356 41 ATCCCCAGCTGCAGACAATTCCACACACAGGTACTGACCCC ATCCCCAGCTGCAGACAATTCTACACACAGGTACTGACCCC < 41bp 0.525075184206489 0.762486784871198 0.22028643 0.8644484 prediction 0.474823201329417 Functional Gain - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56625336 chr12:56625337 synonymous SNV . 0 22 hm5C_associated_SNPs_112223 0 0 0 0 2 SLC39A5 chr12:56625250 3'AG 56625250 Downstream 88bp
chr12 56625337 56625337 1 + C T SKCM 56625336 + 56625316 56625356 41 ATCCCCAGCTGCAGACAATTCCACACACAGGTACTGACCCC ATCCCCAGCTGCAGACAATTCTACACACAGGTACTGACCCC < 41bp 0.525075184206489 0.762486784871198 0.22028643 0.8644484 prediction 0.474823201329417 Functional Gain - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56625336 chr12:56625337 synonymous SNV . 0 22 hm5C_associated_SNPs_112223 0 0 0 0 2 SLC39A5 chr12:56625345 5'GT 56625345 Upstream 9bp
chr5 137520577 137520577 1 + C T GBM 137520576 + 137520556 137520596 41 CTACAGCTGGAGATGCATCTCCGAGATGAAATTTGCAATGA CTACAGCTGGAGATGCATCTCTGAGATGAAATTTGCAATGA < 41bp 0.543690414512146 0.781100358217461 0.6165129 0.4098617 prediction 0.474819887410631 Functional Gain - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137520576 chr5:137520577 stopgain 0.999 1 22 hm5C_associated_SNPs_112224 0 0 1 0 2 KIF20A chr5:137520496 3'AG 137520496 Downstream 82bp
chr5 137520577 137520577 1 + C T GBM 137520576 + 137520556 137520596 41 CTACAGCTGGAGATGCATCTCCGAGATGAAATTTGCAATGA CTACAGCTGGAGATGCATCTCTGAGATGAAATTTGCAATGA < 41bp 0.543690414512146 0.781100358217461 0.6165129 0.4098617 prediction 0.474819887410631 Functional Gain - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137520576 chr5:137520577 stopgain 0.999 1 22 hm5C_associated_SNPs_112224 0 0 1 0 2 KIF20A chr5:137520635 5'GT 137520635 Upstream 59bp
chrX 52844134 52844134 1 + A G UCEC 52844131 + 52844111 52844151 41 TTCAGTGCCTAACCTGGAAGCTGATCTCCAGGAGCTGTCTC TTCAGTGCCTAACCTGGAAGCTGGTCTCCAGGAGCTGTCTC < 41bp 0.498131047309328 0.737399798519033 0.045554966 0.038281113 prediction 0.474799597038065 Functional Gain - XAGE5 ENSG00000171405 CDS Human protein_coding chrX:52844131 chrX:52844134 nonsynonymous SNV 0.018 3 24 hm5C_associated_SNPs_112229 0 0 0 0 1 XAGE5 chrX:52844116 3'AG 52844116 Downstream 19bp
chr19 47879248 47879248 1 + T C COAD 47879246 + 47879226 47879266 41 GCTGCCAGCTCAGCCCAGGACCTGAGCCGCGAGCAGCTGGC GCTGCCAGCTCAGCCCAGGACCCGAGCCGCGAGCAGCTGGC < 41bp 0.456704646641302 0.737395271220522 0.2196478 0.409523 prediction 0.474790542441044 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47879246 chr19:47879248 nonsynonymous SNV 0.898 1 23 hm5C_associated_SNPs_112231 0 0 1 0 1 DHX34 chr19:47879181 3'AG 47879181 Downstream 68bp
chr8 19171494 19171494 1 + C A rs549936185 19171490 + 19171470 19171510 41 CCGCCTCCACCCCTTCGCGGCGCCCGGGGCGGGCTCAGGTG CCGCCTCCACCCCTTCGCGGCGCCAGGGGCGGGCTCAGGTG < 41bp 0.387308395940661 0.737383231850065 0.31341857 0.4221887 prediction 0.47476646370013 Functional Gain - SH2D4A ENSG00000104611 UTR5 Human protein_coding chr8:19171490 chr8:19171494 . . 0 25 hm5C_associated_SNPs_112234 0 0 1 0 1 SH2D4A chr8:19171590 5'GT 19171590 Upstream 97bp
chr14 60977843 60977843 1 + T G rs45549246 60977840 + 60977820 60977860 41 GTCACAGGGTTCCGGGCGGGCACTACGGGCGGAGGGCGACG GTCACAGGGTTCCGGGCGGGCACGACGGGCGGAGGGCGACG < 41bp 0.681238591584485 0.918618979239841 0.84811175 0.88070524 prediction 0.474760775310713 Functional Gain - SIX6 ENSG00000184302 CDS Human protein_coding chr14:60977840 chr14:60977843 nonsynonymous SNV 0.525 2 24 hm5C_associated_SNPs_112235 0 0 0 0 1 SIX6 chr14:60977802 3'AG 60977802 Downstream 42bp
chr22 46202860 46202860 1 + C T UCEC 46202859 + 46202839 46202879 41 GTAAATGAGCTGGATGGTATCCCGTTGATCCTGGACAACTG GTAAATGAGCTGGATGGTATCTCGTTGATCCTGGACAACTG < 41bp 0.533555683706769 0.770931072436644 0.16886973 0.212183 prediction 0.474750777459751 Functional Gain - ATXN10 ENSG00000130638 CDS Human protein_coding chr22:46202859 chr22:46202860 nonsynonymous SNV 0.900 1 22 hm5C_associated_SNPs_112239 0 0 1 0 2 ATXN10 chr22:46202839 3'AG 46202839 Downstream 22bp
chr22 46202860 46202860 1 + C T UCEC 46202859 + 46202839 46202879 41 GTAAATGAGCTGGATGGTATCCCGTTGATCCTGGACAACTG GTAAATGAGCTGGATGGTATCTCGTTGATCCTGGACAACTG < 41bp 0.533555683706769 0.770931072436644 0.16886973 0.212183 prediction 0.474750777459751 Functional Gain - ATXN10 ENSG00000130638 CDS Human protein_coding chr22:46202859 chr22:46202860 nonsynonymous SNV 0.900 1 22 hm5C_associated_SNPs_112239 0 0 1 0 2 ATXN10 chr22:46202902 5'GT 46202902 Upstream 43bp
chr11 64217403 64217403 1 + A G SARC 64217400 + 64217380 64217420 41 CAGGGAACAGCAGGAGGGGCCCCAGGAAGCTGGCCCCAAGG CAGGGAACAGCAGGAGGGGCCCCGGGAAGCTGGCCCCAAGG < 41bp 0.495254482053044 0.737374995390694 0.7827079 0.84798735 prediction 0.474749990781387 Functional Gain - LOC100996455 ENSG00000181908 CDS Human lincRNA chr11:64217400 chr11:64217403 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_112240 0 0 0 0 1 LOC100996455 chr11:64217369 3'AG 64217369 Downstream 35bp
chr9 136268918 136268918 1 + C G rs150582106 136268917 + 136268897 136268937 41 GGATGGGGAAATGGCAGAAGCCAGCTGCGGAGTCTTCTGGC GGATGGGGAAATGGCAGAAGCGAGCTGCGGAGTCTTCTGGC < 41bp 0.423181298295739 0.737371577246686 0.28187227 0.6554727 prediction 0.474743154493372 Functional Gain - STKLD1 ENSG00000198870 CDS Human protein_coding chr9:136268917 chr9:136268918 synonymous SNV . 0 22 hm5C_associated_SNPs_112241 0 0 0 0 2 STKLD1 chr9:136268824 3'AG 136268824 Downstream 95bp
chr9 136268918 136268918 1 + C G rs150582106 136268917 + 136268897 136268937 41 GGATGGGGAAATGGCAGAAGCCAGCTGCGGAGTCTTCTGGC GGATGGGGAAATGGCAGAAGCGAGCTGCGGAGTCTTCTGGC < 41bp 0.423181298295739 0.737371577246686 0.28187227 0.6554727 prediction 0.474743154493372 Functional Gain - STKLD1 ENSG00000198870 CDS Human protein_coding chr9:136268917 chr9:136268918 synonymous SNV . 0 22 hm5C_associated_SNPs_112241 0 0 0 0 2 STKLD1 chr9:136268952 5'GT 136268952 Upstream 35bp
chr4 57860953 57860953 1 + T C COAD 57860951 + 57860931 57860971 41 ACTTACTGCCTTTTGAATGGCTTGACAGATCGTGATCTTTG ACTTACTGCCTTTTGAATGGCTCGACAGATCGTGATCTTTG < 41bp 0.440866158842053 0.737368709169236 0.12195012 0.08871168 prediction 0.474737418338472 Functional Gain - POLR2B ENSG00000047315 CDS Human protein_coding chr4:57860951 chr4:57860953 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_112242 0 0 1 0 1 POLR2B chr4:57861032 5'GT 57861032 Upstream 80bp
chr3 12611711 12611711 1 + C T STAD 12611710 + 12611690 12611730 41 GAAAACTAACTCACATGAACCCGGAAAGCGTGAAAAGAGAA GAAAACTAACTCACATGAACCTGGAAAGCGTGAAAAGAGAA < 41bp 0.549736451423338 0.78709548404292 0.054167658 0.041561693 prediction 0.474718065239164 Functional Gain - MKRN2 ENSG00000075975 CDS Human protein_coding chr3:12611710 chr3:12611711 synonymous SNV . 0 22 hm5C_associated_SNPs_112244 0 0 1 0 1 MKRN2 chr3:12611751 5'GT 12611751 Upstream 41bp
chr7 1026794 1026794 1 + C A LIHC 1026790 + 1026770 1026810 41 GAGGCCAACGCGGTGGCCTGCACCCTGGACATGGTCATGGC GAGGCCAACGCGGTGGCCTGCACCATGGACATGGTCATGGC < 41bp 0.316077879025051 0.737358679744823 0.2505894 0.24385652 prediction 0.474717359489645 Functional Gain - CYP2W1 ENSG00000073067 CDS Human protein_coding chr7:1026790 chr7:1026794 nonsynonymous SNV 0.695 0 25 hm5C_associated_SNPs_112245 0 0 1 0 1 CYP2W1 chr7:1026743 3'AG 1026743 Downstream 52bp
chr7 150741246 150741246 1 + C T SKCM 150741245 + 150741225 150741265 41 ACGGTGCTGGTAATTGCCCACCGGCTCAGCACTGTCCGTGG ACGGTGCTGGTAATTGCCCACTGGCTCAGCACTGTCCGTGG < 41bp 0.501049755728672 0.738407390732104 0.14298204 0.11992502 prediction 0.474715270006864 Functional Gain - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150741245 chr7:150741246 nonsynonymous SNV 0.993 5 22 hm5C_associated_SNPs_112246 0 0 1 0 1 ABCB8 chr7:150741308 5'GT 150741308 Upstream 63bp
chr2 98354277 98354277 1 + C T COAD 98354276 + 98354256 98354296 41 GCACCCGAATGCATCAACTTCCGCAAGTTCTCCAGCCGCAG GCACCCGAATGCATCAACTTCTGCAAGTTCTCCAGCCGCAG < 41bp 0.475885665398225 0.737346108179568 0.04683891 0.11322886 prediction 0.474692216359136 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98354276 chr2:98354277 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_112248 0 0 0 0 1 ZAP70 chr2:98354220 3'AG 98354220 Downstream 58bp
chr3 128077166 128077166 1 + T C STAD 128077164 + 128077144 128077184 41 TTGTCCACTGGGGAACTGGGCATCATCGACAGTGCCTTCGG TTGTCCACTGGGGAACTGGGCACCATCGACAGTGCCTTCGG < 41bp 0.468707054510596 0.737327627167511 0.4239887 0.36477077 prediction 0.474655254335022 Functional Gain - EEFSEC ENSG00000132394 CDS Human protein_coding chr3:128077164 chr3:128077166 nonsynonymous SNV 0.510 0 23 hm5C_associated_SNPs_112252 0 0 1 0 1 EEFSEC chr3:128077216 5'GT 128077216 Upstream 51bp
chr5 40691977 40691977 1 + C A SKCM 40691976 + 40691956 40691996 41 ATCCGAATTGCTTCTGTGAACCCCATCCTAGACCCCTGGAT ATCCGAATTGCTTCTGTGAACACCATCCTAGACCCCTGGAT < 41bp 0.490202117059668 0.737327334648554 0.077623725 0.09012288 prediction 0.474654669297107 Functional Gain - PTGER4 ENSG00000171522 CDS Human protein_coding chr5:40691976 chr5:40691977 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112253 0 0 0 0 1 PTGER4 chr5:40691881 3'AG 40691881 Downstream 97bp
chr22 45923763 45923763 1 + C T SKCM 45923762 + 45923742 45923782 41 TGTCTGCTGGGGAGGGCGGCCCAGGCCCAGGGCCAGAGCTG TGTCTGCTGGGGAGGGCGGCCTAGGCCCAGGGCCAGAGCTG < 41bp 0.491448151672341 0.737321513583044 0.85348403 0.73112965 prediction 0.474643027166088 Functional Gain - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45923762 chr22:45923763 stopgain 0.976 0 22 hm5C_associated_SNPs_112256 0 0 1 0 1 FBLN1 chr22:45923727 3'AG 45923727 Downstream 37bp
chr17 6021433 6021433 1 + T A SKCM 6021429 + 6021409 6021449 41 CTGCTAATCCGGAACCCATACAGGTCCCTGGTGGCAGAATT CTGCTAATCCGGAACCCATACAGGACCCTGGTGGCAGAATT < 41bp 0.402164110437986 0.737318080851458 0.36967248 0.30813318 prediction 0.474636161702917 Functional Gain - WSCD1 ENSG00000179314 CDS Human protein_coding chr17:6021429 chr17:6021433 nonsynonymous SNV 0.935 4 25 hm5C_associated_SNPs_112257 0 0 0 0 1 WSCD1 chr17:6021508 5'GT 6021508 Upstream 76bp
chr19 58193542 58193542 1 + C G rs61734069 58193541 + 58193521 58193561 41 GTTGTGTTCGAATGCCCGCCCCGGTCGGCCGCCGCTCCCCG GTTGTGTTCGAATGCCCGCCCGGGTCGGCCGCCGCTCCCCG < 41bp 0.628626081135131 0.865942483756587 0.307284 0.8656974 prediction 0.474632805242912 Functional Gain - ZNF551 ENSG00000204519 CDS Human other chr19:58193541 chr19:58193542 nonsynonymous SNV 0.005 0 22 hm5C_associated_SNPs_112258 0 0 1 0 1 ZNF551 chr19:58193612 5'GT 58193612 Upstream 71bp
chr1 207868041 207868041 1 + T C LUAD 207868039 + 207868019 207868059 41 TTGGCATGAAAGGGCCCTCCCATGTGAAGTGCCAGGCCCTG TTGGCATGAAAGGGCCCTCCCACGTGAAGTGCCAGGCCCTG < 41bp 0.554039348242547 0.791351336918716 0.1391772 0.12821943 prediction 0.474623977352338 Functional Gain - CR1L ENSG00000197721 CDS Human protein_coding chr1:207868039 chr1:207868041 synonymous SNV . 0 23 hm5C_associated_SNPs_112259 0 0 1 0 1 CR1L chr1:207868096 5'GT 207868096 Upstream 56bp
chr1 44134855 44134855 1 + C T SKCM 44134854 + 44134834 44134874 41 GAGTCAGAGTGAGCTCTTCCCCAAGGAGGATCTGAGTTCTG GAGTCAGAGTGAGCTCTTCCCTAAGGAGGATCTGAGTTCTG < 41bp 0.508979229669513 0.746290687405575 0.4713606 0.19307396 prediction 0.474622915472125 Functional Gain - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44134854 chr1:44134855 synonymous SNV . 0 22 hm5C_associated_SNPs_112260 0 0 1 0 1 KDM4A chr1:44134771 3'AG 44134771 Downstream 85bp
chr2 120012355 120012355 1 + C T LUSC 120012354 + 120012334 120012374 41 GCTGGCCCTCGGCACGTTGTCCCTGCTGGCCGTGACCTCAC GCTGGCCCTCGGCACGTTGTCTCTGCTGGCCGTGACCTCAC < 41bp 0.473005077129399 0.737301416778935 0.19387949 0.20731008 prediction 0.47460283355787 Functional Gain - STEAP3 ENSG00000115107 CDS Human protein_coding chr2:120012354 chr2:120012355 synonymous SNV . 0 22 hm5C_associated_SNPs_112264 0 0 1 0 2 STEAP3 chr2:120012260 3'AG 120012260 Downstream 96bp
chr2 120012355 120012355 1 + C T LUSC 120012354 + 120012334 120012374 41 GCTGGCCCTCGGCACGTTGTCCCTGCTGGCCGTGACCTCAC GCTGGCCCTCGGCACGTTGTCTCTGCTGGCCGTGACCTCAC < 41bp 0.473005077129399 0.737301416778935 0.19387949 0.20731008 prediction 0.47460283355787 Functional Gain - STEAP3 ENSG00000115107 CDS Human protein_coding chr2:120012354 chr2:120012355 synonymous SNV . 0 22 hm5C_associated_SNPs_112264 0 0 1 0 2 STEAP3 chr2:120012424 5'GT 120012424 Upstream 70bp
chr17 76235186 76235186 1 + C A COAD 76235185 + 76235165 76235205 41 AGACGGTGCAGCAGTATGGCCCGCAGCACATGCAGGGCGTC AGACGGTGCAGCAGTATGGCCAGCAGCACATGCAGGGCGTC < 41bp 0.564572396727511 0.801873806346514 0.20937696 0.5302784 prediction 0.474602819238005 Functional Gain - TMEM235 ENSG00000204278 CDS Human protein_coding chr17:76235185 chr17:76235186 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_112265 0 0 0 0 1 TMEM235 chr17:76235105 3'AG 76235105 Downstream 82bp
chr16 57597802 57597802 1 + C T SKCM 57597801 + 57597781 57597821 41 GGTCAGCACGCCATGCAGTTCCCCGCCGAGCTGACCCGGGA GGTCAGCACGCCATGCAGTTCTCCGCCGAGCTGACCCGGGA < 41bp 0.473894922576999 0.737298618683587 0.06399989 0.24875453 prediction 0.474597237367173 Functional Gain - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57597801 chr16:57597802 nonsynonymous SNV 0.736 3 22 hm5C_associated_SNPs_112267 0 0 0 0 2 ADGRG5 chr16:57597760 3'AG 57597760 Downstream 43bp
chr16 57597802 57597802 1 + C T SKCM 57597801 + 57597781 57597821 41 GGTCAGCACGCCATGCAGTTCCCCGCCGAGCTGACCCGGGA GGTCAGCACGCCATGCAGTTCTCCGCCGAGCTGACCCGGGA < 41bp 0.473894922576999 0.737298618683587 0.06399989 0.24875453 prediction 0.474597237367173 Functional Gain - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57597801 chr16:57597802 nonsynonymous SNV 0.736 3 22 hm5C_associated_SNPs_112267 0 0 0 0 2 ADGRG5 chr16:57597891 5'GT 57597891 Upstream 90bp
chr7 142494719 142494719 1 + C A UCEC 142494715 + 142494695 142494735 41 CAGTACTTCGGCGCCGGGACCCGGCTCTCAGTGCTGGGTAA CAGTACTTCGGCGCCGGGACCCGGATCTCAGTGCTGGGTAA < 41bp 0.365313413456994 0.737282323096793 0.3309504 0.6738435 prediction 0.474564646193585 Functional Gain - PRSS3P2;EPHB6 ENSG00000211768 CDS Human TR_J_gene chr7:142494715 chr7:142494719 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_112271 0 0 0 0 1 PRSS3P2;EPHB6 chr7:142494731 5'GT 142494731 Upstream 13bp
chr17 7358653 7358653 1 + C T COAD 7358652 + 7358632 7358672 41 GCGTCTAAAAAGGCCCAAACCCGAGAGAGACCTGATGCCGG GCGTCTAAAAAGGCCCAAACCTGAGAGAGACCTGATGCCGG < 41bp 0.486931531318896 0.737278455521744 0.18162999 0.20160237 prediction 0.474556911043488 Functional Gain - CHRNB1 ENSG00000170175 CDS Human protein_coding chr17:7358652 chr17:7358653 synonymous SNV . 0 22 hm5C_associated_SNPs_112272 0 0 1 0 1 CHRNB1 chr17:7358603 3'AG 7358603 Downstream 51bp
chr1 173446609 173446609 1 + T G UCEC 173446606 + 173446586 173446626 41 ATACCACCGTCGGCCGCATCCGTTTCCACGACTTTCTGGGA ATACCACCGTCGGCCGCATCCGTGTCCACGACTTTCTGGGA < 41bp 0.355739339333814 0.737276353175485 0.11710581 0.25657982 prediction 0.474552706350969 Functional Gain - PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173446606 chr1:173446609 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_112273 0 0 1 0 1 PRDX6 chr1:173446631 5'GT 173446631 Upstream 23bp
chr11 65631361 65631361 1 + C G rs34891773 65631360 + 65631340 65631380 41 AGCATCATCGACGGCCGCTTCCGGGAGCAGAAGGTAATTTT AGCATCATCGACGGCCGCTTCGGGGAGCAGAAGGTAATTTT < 41bp 0.635180114915506 0.872456208948757 0.94419396 0.9374281 prediction 0.474552188066501 Functional Gain - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65631360 chr11:65631361 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_112274 0 0 1 0 2 MUS81 chr11:65631275 3'AG 65631275 Downstream 87bp
chr11 65631361 65631361 1 + C G rs34891773 65631360 + 65631340 65631380 41 AGCATCATCGACGGCCGCTTCCGGGAGCAGAAGGTAATTTT AGCATCATCGACGGCCGCTTCGGGGAGCAGAAGGTAATTTT < 41bp 0.635180114915506 0.872456208948757 0.94419396 0.9374281 prediction 0.474552188066501 Functional Gain - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65631360 chr11:65631361 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_112274 0 0 1 0 2 MUS81 chr11:65631372 5'GT 65631372 Upstream 12bp
chr6 53660182 53660182 1 + T A ESCA 53660178 + 53660158 53660198 41 CCCGGAGCCTGGAGGAGCTGCTGCTGGACGCCAACCAGCTC CCCGGAGCCTGGAGGAGCTGCTGCAGGACGCCAACCAGCTC < 41bp 0.644508203595111 0.881773642383081 0.24471888 0.5421315 prediction 0.474530877575941 Functional Gain - LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53660178 chr6:53660182 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_112275 0 0 0 0 1 LRRC1 chr6:53660213 5'GT 53660213 Upstream 32bp
chr2 162227688 162227688 1 + A G UCEC 162227685 + 162227665 162227705 41 ATGCCCTCTTTGTTTCAGGCCGGAGATGGTTGTTGGTTGGT ATGCCCTCTTTGTTTCAGGCCGGGGATGGTTGTTGGTTGGT < 41bp 0.50178552599884 0.739046869519307 0.6037053 0.7766826 prediction 0.474522687040933 Functional Gain - PSMD14 ENSG00000115233 CDS Human protein_coding chr2:162227685 chr2:162227688 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_112277 0 0 1 0 1 PSMD14 chr2:162227683 3'AG 162227683 Downstream 6bp
chr16 72132924 72132924 1 + C T LGG 72132923 + 72132903 72132943 41 GAAGACACTTGGGGTCCACCCCGCGTCTGTCCAGGGGCCGA GAAGACACTTGGGGTCCACCCTGCGTCTGTCCAGGGGCCGA < 41bp 0.520678035303373 0.757924833633937 0.635343 0.34426475 prediction 0.474493596661128 Functional Gain - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72132923 chr16:72132924 nonsynonymous SNV 0.604 2 22 hm5C_associated_SNPs_112281 0 0 1 0 2 DHX38 chr16:72132826 3'AG 72132826 Downstream 99bp
chr16 72132924 72132924 1 + C T LGG 72132923 + 72132903 72132943 41 GAAGACACTTGGGGTCCACCCCGCGTCTGTCCAGGGGCCGA GAAGACACTTGGGGTCCACCCTGCGTCTGTCCAGGGGCCGA < 41bp 0.520678035303373 0.757924833633937 0.635343 0.34426475 prediction 0.474493596661128 Functional Gain - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72132923 chr16:72132924 nonsynonymous SNV 0.604 2 22 hm5C_associated_SNPs_112281 0 0 1 0 2 DHX38 chr16:72132944 5'GT 72132944 Upstream 21bp
chr2 150327244 150327244 1 + C T SKCM 150327243 + 150327223 150327263 41 TATCTGTAACTTGCCACTGCCCCGAAATGAAACTGATGCCA TATCTGTAACTTGCCACTGCCTCGAAATGAAACTGATGCCA < 41bp 0.542772458712725 0.780010644157103 0.16558367 0.8811226 prediction 0.474476370888756 Functional Gain - LYPD6 ENSG00000187123 CDS Human protein_coding chr2:150327243 chr2:150327244 synonymous SNV . 0 22 hm5C_associated_SNPs_112284 0 0 0 4 1 LYPD6 chr2:150327197 3'AG 150327197 Downstream 48bp
chr12 124798801 124798801 1 + C G rs12318072 124798797 + 124798777 124798817 41 CCAGGACAAGGTCTTCTATGCGCCCGTACCCACCGTCACGG CCAGGACAAGGTCTTCTATGCGCCGGTACCCACCGTCACGG < 41bp 0.601973753700779 0.83921114588396 0.030878603 0.07543847 prediction 0.47447478436636 Functional Gain - RFLNA ENSG00000178882 CDS Human protein_coding chr12:124798797 chr12:124798801 synonymous SNV . 0 25 hm5C_associated_SNPs_112285 0 0 0 0 1 RFLNA chr12:124798738 3'AG 124798738 Downstream 64bp
chr17 7917309 7917309 1 + C T HNSC 7917308 + 7917288 7917328 41 AGCAGTGCTGGGCAGAGCAGCCGGAACTTCGGCCCTCCATG AGCAGTGCTGGGCAGAGCAGCTGGAACTTCGGCCCTCCATG < 41bp 0.495083625562008 0.73723630330485 0.91051126 0.8930087 prediction 0.4744726066097 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7917308 chr17:7917309 nonsynonymous SNV 0.978 4 22 hm5C_associated_SNPs_112286 0 0 0 0 1 GUCY2D chr17:7917346 5'GT 7917346 Upstream 38bp
chr12 106977137 106977137 1 + C A BLCA 106977136 + 106977116 106977156 41 GGAGGAACCCGACATGGATTCCACAGGTTAGTCCTACTGGC GGAGGAACCCGACATGGATTCAACAGGTTAGTCCTACTGGC < 41bp 0.528505495078824 0.76573773424591 0.24255028 0.19717935 prediction 0.474464478334173 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:106977136 chr12:106977137 synonymous SNV . 0 22 hm5C_associated_SNPs_112287 0 0 0 0 1 RFX4 chr12:106977141 5'GT 106977141 Upstream 5bp
chr2 108999931 108999931 1 + C T CESC 108999930 + 108999910 108999950 41 TGGGAAGCCAAAGACAAACACCGTATTCTCTATCTCTTCTA TGGGAAGCCAAAGACAAACACTGTATTCTCTATCTCTTCTA < 41bp 0.498530063092524 0.737230183460975 0.046078444 0.10917878 prediction 0.474460366921951 Functional Gain - SULT1C4 ENSG00000198075 CDS Human protein_coding chr2:108999930 chr2:108999931 nonsynonymous SNV 0.629 3 22 hm5C_associated_SNPs_112288 0 0 1 0 1 SULT1C4 chr2:108999966 5'GT 108999966 Upstream 36bp
chr5 5303842 5303842 1 + C T SKCM 5303841 + 5303821 5303861 41 TGCTTCAGCGCTGCCACAAGCCCAAGAAGCTGCAGTGGCTG TGCTTCAGCGCTGCCACAAGCTCAAGAAGCTGCAGTGGCTG < 41bp 0.471143716459419 0.737225815545024 0.1421741 0.2604012 prediction 0.474451631090047 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5303841 chr5:5303842 nonsynonymous SNV 0.955 0 22 hm5C_associated_SNPs_112290 0 0 0 0 1 ADAMTS16 chr5:5303879 5'GT 5303879 Upstream 38bp
chr9 72471575 72471575 1 + C G rs7851894 72471574 + 72471554 72471594 41 GAATGAGGAAACAGTGAGCTCCGGGATTATCGAAAGGTATT GAATGAGGAAACAGTGAGCTCGGGGATTATCGAAAGGTATT < 41bp 0.445730775320023 0.737223111183017 0.46369013 0.8796356 prediction 0.474446222366034 Functional Gain - C9orf135 ENSG00000204711 CDS Human protein_coding chr9:72471574 chr9:72471575 synonymous SNV . 0 22 hm5C_associated_SNPs_112292 0 0 0 0 1 C9orf135 chr9:72471589 5'GT 72471589 Upstream 15bp
chr17 30815055 30815055 1 + C A CESC 30815054 + 30815034 30815074 41 CGTCACCTCCGCAGGGACGCCCAAACGGGTCATCGTCCAGG CGTCACCTCCGCAGGGACGCCAAAACGGGTCATCGTCCAGG < 41bp 0.47476917228636 0.737218301132783 0.103375256 0.41154143 prediction 0.474436602265566 Functional Gain - CDK5R1 ENSG00000176749 CDS Human protein_coding chr17:30815054 chr17:30815055 synonymous SNV . 0 22 hm5C_associated_SNPs_112294 0 0 0 0 1 CDK5R1 chr17:30815104 5'GT 30815104 Upstream 50bp
chr22 44422227 44422227 1 + C G rs539332240 44422226 + 44422206 44422246 41 GCAGGAGGAGGAGCAGGACGCCGGGCACTGCTGATGCTGCT GCAGGAGGAGGAGCAGGACGCGGGGCACTGCTGATGCTGCT < 41bp 0.607434801206324 0.844651601546644 0.87925184 0.9158301 prediction 0.47443360068064 Functional Gain - PARVB ENSG00000188677 intronic Human protein_coding chr22:44422226 chr22:44422227 . . 0 22 hm5C_associated_SNPs_112295 0 0 0 0 1 PARVB chr22:44422256 5'GT 44422256 Upstream 30bp
chr15 40557099 40557099 1 + C A rs142256590 40557098 + 40557078 40557118 41 GCAAGTTTGTGGGCCTCCCCCCACAATGGCAGAACATCCTG GCAAGTTTGTGGGCCTCCCCCAACAATGGCAGAACATCCTG < 41bp 0.560319629654205 0.797528666381836 0.057541788 0.10567176 prediction 0.474418073455262 Functional Gain - BUB1B-PAK6;PAK6 ENSG00000137843;ENSG00000259288 CDS Human protein_coding chr15:40557098 chr15:40557099 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112298 0 0 0 0 1 BUB1B-PAK6;PAK6 chr15:40557190 5'GT 40557190 Upstream 92bp
chr5 85583642 85583642 1 + C A rs71641946 85583638 + 85583618 85583658 41 TGTCCTCATTGGAGGATCAGCTTGCCTGCTCTGCTCTGGAT TGTCCTCATTGGAGGATCAGCTTGACTGCTCTGCTCTGGAT < 41bp 0.36255649480688 0.737207519413552 0.25139046 0.32916912 prediction 0.474415038827104 Functional Gain - NBPF22P ENSG00000205449 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:85583638 chr5:85583642 . . 0 25 hm5C_associated_SNPs_112299 0 0 0 0 1 NBPF22P chr5:85583665 5'GT 85583665 Upstream 24bp
chr2 106690448 106690448 1 + C G LGG 106690447 + 106690427 106690467 41 GCTGTGGGACCGGACTCGGCCCGAGGTGCAGCAGTGGTACC GCTGTGGGACCGGACTCGGCCGGAGGTGCAGCAGTGGTACC < 41bp 0.633454083729442 0.870629713701317 0.30894047 0.918514 prediction 0.47435125994375 Functional Gain - C2orf40 ENSG00000119147 CDS Human protein_coding chr2:106690447 chr2:106690448 synonymous SNV . 0 22 hm5C_associated_SNPs_112306 0 0 0 0 1 C2orf40 chr2:106690499 5'GT 106690499 Upstream 52bp
chr7 100771831 100771831 1 + C A LUAD 100771830 + 100771810 100771850 41 GTGGCGCAGGCCTCCAAGGACCGCAACGTGGTTTTCTCACC GTGGCGCAGGCCTCCAAGGACAGCAACGTGGTTTTCTCACC < 41bp 0.537585938897004 0.774760221316362 0.21899891 0.6994966 prediction 0.474348564838715 Functional Gain - SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100771830 chr7:100771831 nonsynonymous SNV 0.979 1 22 hm5C_associated_SNPs_112307 0 0 1 0 1 SERPINE1 chr7:100771810 3'AG 100771810 Downstream 22bp
chr19 10527570 10527570 1 + C G rs550679018 10527566 + 10527546 10527586 41 GCTTGGTCTTGTAGGAGGCCCTGGCCCTGCCGACATGGCCA GCTTGGTCTTGTAGGAGGCCCTGGGCCTGCCGACATGGCCA < 41bp 0.443431805333831 0.737173533621807 0.5943781 0.7906788 prediction 0.474347067243615 Functional Gain - PDE4A ENSG00000065989 UTR5 Human protein_coding chr19:10527566 chr19:10527570 . . 0 25 hm5C_associated_SNPs_112308 0 0 0 0 2 PDE4A chr19:10527560 3'AG 10527560 Downstream 11bp
chr19 10527570 10527570 1 + C G rs550679018 10527566 + 10527546 10527586 41 GCTTGGTCTTGTAGGAGGCCCTGGCCCTGCCGACATGGCCA GCTTGGTCTTGTAGGAGGCCCTGGGCCTGCCGACATGGCCA < 41bp 0.443431805333831 0.737173533621807 0.5943781 0.7906788 prediction 0.474347067243615 Functional Gain - PDE4A ENSG00000065989 UTR5 Human protein_coding chr19:10527566 chr19:10527570 . . 0 25 hm5C_associated_SNPs_112308 0 0 0 0 2 PDE4A chr19:10527666 5'GT 10527666 Upstream 97bp
chr1 11907659 11907659 1 - A G rs142116829 11907661 - 11907641 11907681 41 GGTCAGACCAGAGCTAATCCCATGTACAATGCCGTGTCCAA GGTCAGACCAGAGCTAATCCCACGTACAATGCCGTGTCCAA < 41bp 0.519983128276954 0.757151493825745 0.3461423 0.3321792 prediction 0.474336731097583 Functional Gain - NPPA ENSG00000175206 CDS Human protein_coding chr1:11907661 chr1:11907659 nonsynonymous SNV 0.026 1 23 hm5C_associated_SNPs_112311 1 0 0 0 1 NPPA chr1:11907619 5'GT 11907619 Upstream 41bp
chr10 102753040 102753040 1 + T G UCEC 102753037 + 102753017 102753057 41 ATCTGCAGGTGTCCAAGAACCGCTTTGATGGAGATGTAGGT ATCTGCAGGTGTCCAAGAACCGCGTTGATGGAGATGTAGGT < 41bp 0.361993451846393 0.737162551939987 0.27623177 0.43613786 prediction 0.474325103879974 Functional Gain - TWNK ENSG00000107815 CDS Human protein_coding chr10:102753037 chr10:102753040 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_112313 0 0 1 0 1 TWNK chr10:102752947 3'AG 102752947 Downstream 94bp
chr6 36262099 36262099 1 + A G COAD 36262096 + 36262076 36262116 41 CGGCCATCTTCCACGACTTCCGCATGTTCAACTGCTCCTTC CGGCCATCTTCCACGACTTCCGCGTGTTCAACTGCTCCTTC < 41bp 0.494355535192588 0.737160993169143 0.3104859 0.5783139 prediction 0.474321986338286 Functional Gain - PNPLA1 ENSG00000180316 CDS Human protein_coding chr6:36262096 chr6:36262099 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_112314 0 0 0 0 1 PNPLA1 chr6:36262176 5'GT 36262176 Upstream 78bp
chr19 4288335 4288335 1 + C T SKCM 4288334 + 4288314 4288354 41 TGCGGCTCAGTGAGACCAACCCCCAGGACTGCTCCTTGTCT TGCGGCTCAGTGAGACCAACCTCCAGGACTGCTCCTTGTCT < 41bp 0.464928358359301 0.737160591664062 0.106000125 0.92961025 prediction 0.474321183328123 Functional Gain - SHD ENSG00000105251 CDS Human protein_coding chr19:4288334 chr19:4288335 nonsynonymous SNV 0.802 2 22 hm5C_associated_SNPs_112315 0 0 0 0 2 SHD chr19:4288240 3'AG 4288240 Downstream 96bp
chr19 4288335 4288335 1 + C T SKCM 4288334 + 4288314 4288354 41 TGCGGCTCAGTGAGACCAACCCCCAGGACTGCTCCTTGTCT TGCGGCTCAGTGAGACCAACCTCCAGGACTGCTCCTTGTCT < 41bp 0.464928358359301 0.737160591664062 0.106000125 0.92961025 prediction 0.474321183328123 Functional Gain - SHD ENSG00000105251 CDS Human protein_coding chr19:4288334 chr19:4288335 nonsynonymous SNV 0.802 2 22 hm5C_associated_SNPs_112315 0 0 0 0 2 SHD chr19:4288359 5'GT 4288359 Upstream 25bp
chr4 123542083 123542083 1 - G T LUSC 123542087 - 123542067 123542107 41 GGGGACACTGGTCCACAAATCAAGCTCCCAAGGTCAAGATC GGGGACACTGGTCCACAAATCAAGATCCCAAGGTCAAGATC < 41bp 0.684519858526543 0.921669491022381 0.31602836 0.5846622 prediction 0.474299264991676 Functional Gain - IL21 ENSG00000138684 CDS Human protein_coding chr4:123542087 chr4:123542083 nonsynonymous SNV 0.287 1 25 hm5C_associated_SNPs_112318 0 0 0 0 1 IL21 chr4:123541999 5'GT 123541999 Upstream 85bp
chr19 12848425 12848425 1 + A G STAD 12848422 + 12848402 12848442 41 TTAGCAACATCATCGAGCAGCGCAGCCTGAAGTGGATCTTC TTAGCAACATCATCGAGCAGCGCGGCCTGAAGTGGATCTTC < 41bp 0.507196850390023 0.744346327119586 0.19332728 0.2973897 prediction 0.474298953459127 Functional Gain - ASNA1 ENSG00000198356 CDS Human protein_coding chr19:12848422 chr19:12848425 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_112319 0 0 1 0 1 ASNA1 chr19:12848480 5'GT 12848480 Upstream 56bp
chr5 102530724 102530724 1 + C A rs17155138 102530723 + 102530703 102530743 41 GCACTAAAGCAAGCAGCAAACCAGGTAAGGGGTGTGTGTGT GCACTAAAGCAAGCAGCAAACAAGGTAAGGGGTGTGTGTGT < 41bp 0.545388201304066 0.782533008111697 0.88201505 0.8801627 prediction 0.474289613615263 Functional Gain - PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102530723 chr5:102530724 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_112322 0 0 0 0 1 PPIP5K2 chr5:102530726 5'GT 102530726 Upstream 3bp
chr20 33509186 33509186 1 + C A UCEC 33509185 + 33509165 33509205 41 CAGTGGGTGAACCCATCAACCCTGAGGCCTGGCTATGGTAC CAGTGGGTGAACCCATCAACCATGAGGCCTGGCTATGGTAC < 41bp 0.556778018666227 0.793920426955399 0.34030336 0.50181836 prediction 0.474284816578343 Functional Gain - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33509185 chr20:33509186 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_112323 0 0 1 0 2 ACSS2 chr20:33509133 3'AG 33509133 Downstream 54bp
chr20 33509186 33509186 1 + C A UCEC 33509185 + 33509165 33509205 41 CAGTGGGTGAACCCATCAACCCTGAGGCCTGGCTATGGTAC CAGTGGGTGAACCCATCAACCATGAGGCCTGGCTATGGTAC < 41bp 0.556778018666227 0.793920426955399 0.34030336 0.50181836 prediction 0.474284816578343 Functional Gain - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33509185 chr20:33509186 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_112323 0 0 1 0 2 ACSS2 chr20:33509265 5'GT 33509265 Upstream 80bp
chr22 41605873 41605873 1 + C G COAD 41605869 + 41605849 41605889 41 TCGGGAAGCAGGGGAACTGCCGACCTCCCCGCTGCATTTGC TCGGGAAGCAGGGGAACTGCCGACGTCCCCGCTGCATTTGC < 41bp 0.449713353875454 0.737138005053504 0.27235943 0.77952635 prediction 0.474276010107008 Functional Gain - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41605869 chr22:41605873 synonymous SNV . 0 25 hm5C_associated_SNPs_112324 0 0 1 0 1 L3MBTL2 chr22:41605937 5'GT 41605937 Upstream 65bp
chr17 72470793 72470793 1 + C A ACC 72470792 + 72470772 72470812 41 GCCACCCACAGTGCCAGCATCCAGGAGGAAACTGAGGAGGT GCCACCCACAGTGCCAGCATCAAGGAGGAAACTGAGGAGGT < 41bp 0.48032495737769 0.737136326877428 0.6026393 0.86856115 prediction 0.474272653754855 Functional Gain - CD300A ENSG00000167851 CDS Human protein_coding chr17:72470792 chr17:72470793 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_112325 0 0 0 0 1 CD300A chr17:72470824 5'GT 72470824 Upstream 32bp
chr19 4231212 4231212 1 + C T SKCM 4231211 + 4231191 4231231 41 CCCCAGCAGCTCTGACACTGCCCCGGGTGCAATGCCGAGCC CCCCAGCAGCTCTGACACTGCTCCGGGTGCAATGCCGAGCC < 41bp 0.549217332934048 0.786340192318443 0.76964545 0.8400409 prediction 0.474245718768791 Functional Gain - EBI3 ENSG00000105246 CDS Human protein_coding chr19:4231211 chr19:4231212 nonsynonymous SNV 0.007 1 22 hm5C_associated_SNPs_112327 0 0 0 0 1 EBI3 chr19:4231188 3'AG 4231188 Downstream 25bp
chr16 20435256 20435256 1 + C T LUAD 20435255 + 20435235 20435275 41 CAGACGGTGGGTGGCCTTGACCGAATCTGACATCTTCTGGA CAGACGGTGGGTGGCCTTGACTGAATCTGACATCTTCTGGA < 41bp 0.516018037998728 0.753131367166464 0.2759625 0.34238398 prediction 0.474226658335472 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20435255 chr16:20435256 synonymous SNV . 0 22 hm5C_associated_SNPs_112328 0 0 0 0 1 ACSM5 chr16:20435238 3'AG 20435238 Downstream 19bp
chr16 10837880 10837880 1 + C T COAD 10837879 + 10837859 10837899 41 TCATGTCAGGGATGCCCCAACCAGCGGCTGTGCGCTTCTGG TCATGTCAGGGATGCCCCAACTAGCGGCTGTGCGCTTCTGG < 41bp 0.506441193747568 0.743551739365244 0.7589054 0.2462351 prediction 0.474221091235353 Functional Gain - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10837879 chr16:10837880 stopgain 0.997 1 22 hm5C_associated_SNPs_112329 0 0 1 0 2 NUBP1 chr16:10837818 3'AG 10837818 Downstream 63bp
chr16 10837880 10837880 1 + C T COAD 10837879 + 10837859 10837899 41 TCATGTCAGGGATGCCCCAACCAGCGGCTGTGCGCTTCTGG TCATGTCAGGGATGCCCCAACTAGCGGCTGTGCGCTTCTGG < 41bp 0.506441193747568 0.743551739365244 0.7589054 0.2462351 prediction 0.474221091235353 Functional Gain - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10837879 chr16:10837880 stopgain 0.997 1 22 hm5C_associated_SNPs_112329 0 0 1 0 2 NUBP1 chr16:10837922 5'GT 10837922 Upstream 43bp
chrX 125954709 125954709 1 + C A UCEC 125954708 + 125954688 125954728 41 AATGGGAACCAGGAGCTGCACCACGACATGCCCCTGCAATG AATGGGAACCAGGAGCTGCACAACGACATGCCCCTGCAATG < 41bp 0.549914796294361 0.7870141761757 0.019576788 0.024041474 prediction 0.474198759762678 Functional Gain - PRR32 ENSG00000183631 CDS Human protein_coding chrX:125954708 chrX:125954709 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_112331 0 0 0 0 1 PRR32 chrX:125954642 3'AG 125954642 Downstream 68bp
chr19 17973010 17973010 1 + C A STAD 17973006 + 17972986 17973026 41 CCGGGAATACCGGGACCTGACCACCGCAGGCGCTGTCACCC CCGGGAATACCGGGACCTGACCACAGCAGGCGCTGTCACCC < 41bp 0.313571983148731 0.737093892203706 0.20160621 0.17048818 prediction 0.474187784407411 Functional Gain - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17973006 chr19:17973010 synonymous SNV . 0 25 hm5C_associated_SNPs_112335 0 0 1 0 1 RPL18A chr19:17973032 5'GT 17973032 Upstream 23bp
chr9 133267464 133267464 1 + C A rs142086565 133267460 + 133267440 133267480 41 CAAGGACGGCCTGCCCCTCCCGCTCTCCCAGCGCACCCTCC CAAGGACGGCCTGCCCCTCCCGCTATCCCAGCGCACCCTCC < 41bp 0.354489811358279 0.737092555475729 0.117013276 0.24051166 prediction 0.474185110951457 Functional Gain - HMCN2 ENSG00000148357;ENSG00000215428 intergenic Human other chr9:133267460 chr9:133267464 . . 0 25 hm5C_associated_SNPs_112336 0 0 0 0 1 HMCN2 chr9:133267505 5'GT 133267505 Upstream 42bp
chr2 99193584 99193584 1 + C T LUAD 99193583 + 99193563 99193603 41 ATGGCCCCGCAGGTCTTCACCCAGGCCCTGGAGTGCATGCG ATGGCCCCGCAGGTCTTCACCTAGGCCCTGGAGTGCATGCG < 41bp 0.50288940133153 0.739971884864538 0.66207004 0.42436612 prediction 0.474164967066015 Functional Gain - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99193583 chr2:99193584 stopgain 0.998 1 22 hm5C_associated_SNPs_112338 0 0 1 0 1 INPP4A chr2:99193606 5'GT 99193606 Upstream 23bp
chr19 57922713 57922713 1 + C G rs12974211 57922712 + 57922692 57922732 41 TGTCAGCGTCCAGGTCACTGCCGCTCCCGCCCCGCTCTTCC TGTCAGCGTCCAGGTCACTGCGGCTCCCGCCCCGCTCTTCC < 41bp 0.48413444473567 0.737075650519675 0.25403944 0.873937 prediction 0.47415130103935 Functional Gain - ZNF17 ENSG00000186272 UTR5 Human protein_coding chr19:57922712 chr19:57922713 . . 0 22 hm5C_associated_SNPs_112340 0 0 0 0 1 ZNF17 chr19:57922774 5'GT 57922774 Upstream 62bp
chr14 96157164 96157164 1 + C G LUSC 96157160 + 96157140 96157180 41 GCCAGATGCCCTTCTCCCAGCTGCCCGCCGTGTGGCAGCTC GCCAGATGCCCTTCTCCCAGCTGCGCGCCGTGTGGCAGCTC < 41bp 0.429069081772012 0.737067425361668 0.17477009 0.18765152 prediction 0.474134850723336 Functional Gain - TCL1B ENSG00000213231 CDS Human protein_coding chr14:96157160 chr14:96157164 nonsynonymous SNV 0.002 3 25 hm5C_associated_SNPs_112343 0 0 0 0 1 TCL1B chr14:96157073 3'AG 96157073 Downstream 92bp
chr11 34162049 34162049 1 + T C UCEC 34162047 + 34162027 34162067 41 GACTATCACCTCATCATGGACATGATCCCGGCCATCTCTCG GACTATCACCTCATCATGGACACGATCCCGGCCATCTCTCG < 41bp 0.44628054432396 0.737067303312089 0.059640944 0.021296233 prediction 0.474134606624177 Functional Gain - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34162047 chr11:34162049 nonsynonymous SNV 0.539 2 23 hm5C_associated_SNPs_112344 0 0 1 0 1 NAT10 chr11:34162119 5'GT 34162119 Upstream 71bp
chr1 236918340 236918340 1 + C T SKCM 236918339 + 236918319 236918359 41 GAGATTGCCCGGAGCTCCATCCAGATCACAGGAGCCCTGGA GAGATTGCCCGGAGCTCCATCTAGATCACAGGAGCCCTGGA < 41bp 0.560454588960428 0.797497743044435 0.7433398 0.49232048 prediction 0.474086308168013 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236918339 chr1:236918340 stopgain 1.000 0 22 hm5C_associated_SNPs_112351 0 0 0 0 1 ACTN2 chr1:236918319 3'AG 236918319 Downstream 22bp
chr19 1270972 1270972 1 + A G UCEC 1270969 + 1270949 1270989 41 GCAAACTTTTTGTTGGAGGGCTGAGTTTTGACACCAATGAG GCAAACTTTTTGTTGGAGGGCTGGGTTTTGACACCAATGAG < 41bp 0.515575924680789 0.752613770797704 0.26301053 0.35702258 prediction 0.474075692233831 Functional Gain - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1270969 chr19:1270972 nonsynonymous SNV 0.887 3 24 hm5C_associated_SNPs_112353 0 0 1 0 2 CIRBP chr19:1270927 3'AG 1270927 Downstream 46bp
chr19 1270972 1270972 1 + A G UCEC 1270969 + 1270949 1270989 41 GCAAACTTTTTGTTGGAGGGCTGAGTTTTGACACCAATGAG GCAAACTTTTTGTTGGAGGGCTGGGTTTTGACACCAATGAG < 41bp 0.515575924680789 0.752613770797704 0.26301053 0.35702258 prediction 0.474075692233831 Functional Gain - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1270969 chr19:1270972 nonsynonymous SNV 0.887 3 24 hm5C_associated_SNPs_112353 0 0 1 0 2 CIRBP chr19:1271035 5'GT 1271035 Upstream 64bp
chr1 156843466 156843466 1 + C G LUAD 156843465 + 156843445 156843485 41 CACACGGCGGTGGAGATGCACCACTGGTGCATCCCCTTCTC CACACGGCGGTGGAGATGCACGACTGGTGCATCCCCTTCTC < 41bp 0.40496923768191 0.737036831759512 0.06438261 0.05623123 prediction 0.474073663519023 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156843465 chr1:156843466 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_112355 0 0 0 0 1 NTRK1 chr1:156843425 3'AG 156843425 Downstream 42bp
chr16 28602162 28602162 1 + C T SKCM 28602161 + 28602141 28602181 41 AGGCCAACCCGGAGACGGACCCTGAGGCCTTGTTCCAGAAG AGGCCAACCCGGAGACGGACCTTGAGGCCTTGTTCCAGAAG < 41bp 0.561680100788442 0.798715124327582 0.17419854 0.1540393 prediction 0.47407004707828 Functional Gain - SGF29 ENSG00000176476 CDS Human protein_coding chr16:28602161 chr16:28602162 nonsynonymous SNV 0.108 2 22 hm5C_associated_SNPs_112356 0 0 1 0 2 SGF29 chr16:28602094 3'AG 28602094 Downstream 69bp
chr16 28602162 28602162 1 + C T SKCM 28602161 + 28602141 28602181 41 AGGCCAACCCGGAGACGGACCCTGAGGCCTTGTTCCAGAAG AGGCCAACCCGGAGACGGACCTTGAGGCCTTGTTCCAGAAG < 41bp 0.561680100788442 0.798715124327582 0.17419854 0.1540393 prediction 0.47407004707828 Functional Gain - SGF29 ENSG00000176476 CDS Human protein_coding chr16:28602161 chr16:28602162 nonsynonymous SNV 0.108 2 22 hm5C_associated_SNPs_112356 0 0 1 0 2 SGF29 chr16:28602256 5'GT 28602256 Upstream 95bp
chr20 37168446 37168446 1 + C T UCEC 37168445 + 37168425 37168465 41 GTGATGGTTGACTCAGGAGACCGGAAGCGAGCCATCAGTTC GTGATGGTTGACTCAGGAGACTGGAAGCGAGCCATCAGTTC < 41bp 0.520592555287423 0.757622470103378 0.17700207 0.18171465 prediction 0.474059829631909 Functional Gain - RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37168445 chr20:37168446 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_112357 0 0 1 0 1 RALGAPB chr20:37168419 3'AG 37168419 Downstream 28bp
chr9 43861010 43861010 1 + C A rs576126435 43861009 + 43860989 43861029 41 CCGTTTCTGCTCAGCAGACTCCGCGTGGACGGTGGTGCGGC CCGTTTCTGCTCAGCAGACTCAGCGTGGACGGTGGTGCGGC < 41bp 0.546859272033516 0.78388462050544 0.50584733 0.74894416 prediction 0.474050696943848 Functional Gain - CNTNAP3B ENSG00000154529 CDS Human protein_coding chr9:43861009 chr9:43861010 synonymous SNV . 0 22 hm5C_associated_SNPs_112359 0 0 0 0 2 CNTNAP3B chr9:43861003 3'AG 43861003 Downstream 8bp
chr9 43861010 43861010 1 + C A rs576126435 43861009 + 43860989 43861029 41 CCGTTTCTGCTCAGCAGACTCCGCGTGGACGGTGGTGCGGC CCGTTTCTGCTCAGCAGACTCAGCGTGGACGGTGGTGCGGC < 41bp 0.546859272033516 0.78388462050544 0.50584733 0.74894416 prediction 0.474050696943848 Functional Gain - CNTNAP3B ENSG00000154529 CDS Human protein_coding chr9:43861009 chr9:43861010 synonymous SNV . 0 22 hm5C_associated_SNPs_112359 0 0 0 0 2 CNTNAP3B chr9:43861006 3'AG 43861006 Downstream 5bp
chr10 12277056 12277056 1 + C T HNSC 12277055 + 12277035 12277075 41 TTTTGTTTACAGCTCGTTCTCCGAAAATGGTGTGAATTGAT TTTTGTTTACAGCTCGTTCTCTGAAAATGGTGTGAATTGAT < 41bp 0.496885660094085 0.737005350325413 0.37068233 0.074046016 prediction 0.474010700650826 Functional Gain - CDC123 ENSG00000151465 CDS Human protein_coding chr10:12277055 chr10:12277056 stopgain 0.964 1 22 hm5C_associated_SNPs_112364 0 0 1 0 2 CDC123 chr10:12277047 3'AG 12277047 Downstream 10bp
chr10 12277056 12277056 1 + C T HNSC 12277055 + 12277035 12277075 41 TTTTGTTTACAGCTCGTTCTCCGAAAATGGTGTGAATTGAT TTTTGTTTACAGCTCGTTCTCTGAAAATGGTGTGAATTGAT < 41bp 0.496885660094085 0.737005350325413 0.37068233 0.074046016 prediction 0.474010700650826 Functional Gain - CDC123 ENSG00000151465 CDS Human protein_coding chr10:12277055 chr10:12277056 stopgain 0.964 1 22 hm5C_associated_SNPs_112364 0 0 1 0 2 CDC123 chr10:12277122 5'GT 12277122 Upstream 67bp
chr22 44342112 44342112 1 + C T SKCM 44342111 + 44342091 44342131 41 GCCCTGCTGGACTCCCTGCTCCCCCAAGGGCTGTCCAGCAG GCCCTGCTGGACTCCCTGCTCTCCCAAGGGCTGTCCAGCAG < 41bp 0.493769667947364 0.737001127982574 0.06775305 0.10877198 prediction 0.474002255965148 Functional Gain - PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44342111 chr22:44342112 synonymous SNV . 0 22 hm5C_associated_SNPs_112366 0 0 0 0 1 PNPLA3 chr22:44342034 3'AG 44342034 Downstream 79bp
chr1 192335068 192335068 1 + T G UCEC 192335065 + 192335045 192335085 41 CCACAGATTAACATTGACTTCGGTACCAGAGACCTCATCTC CCACAGATTAACATTGACTTCGGGACCAGAGACCTCATCTC < 41bp 0.669668369850202 0.906665519901267 0.045250535 0.1733383 prediction 0.47399430010213 Functional Gain - RGS21 ENSG00000253148 CDS Human protein_coding chr1:192335065 chr1:192335068 synonymous SNV . 0 24 hm5C_associated_SNPs_112367 0 0 0 0 1 RGS21 chr1:192335051 3'AG 192335051 Downstream 18bp
chr9 124521213 124521213 1 + C A rs147323804 124521209 + 124521189 124521229 41 TCAGGAAGCAAGTGCTTTTCCTGCCGGTCTGCAGCTGAGCG TCAGGAAGCAAGTGCTTTTCCTGCAGGTCTGCAGCTGAGCG < 41bp 0.308848580419586 0.736992800809586 0.12694004 0.17374605 prediction 0.473985601619171 Functional Gain - DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124521209 chr9:124521213 synonymous SNV . 0 25 hm5C_associated_SNPs_112368 0 0 1 0 2 DAB2IP chr9:124521177 3'AG 124521177 Downstream 37bp
chr9 124521213 124521213 1 + C A rs147323804 124521209 + 124521189 124521229 41 TCAGGAAGCAAGTGCTTTTCCTGCCGGTCTGCAGCTGAGCG TCAGGAAGCAAGTGCTTTTCCTGCAGGTCTGCAGCTGAGCG < 41bp 0.308848580419586 0.736992800809586 0.12694004 0.17374605 prediction 0.473985601619171 Functional Gain - DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124521209 chr9:124521213 synonymous SNV . 0 25 hm5C_associated_SNPs_112368 0 0 1 0 2 DAB2IP chr9:124521275 5'GT 124521275 Upstream 63bp
chr1 43233242 43233242 1 + C T rs144607714 43233241 + 43233221 43233261 41 CTGGTGAGCCCCTACCACACCCACCGGGCCGGGGACCCCTT CTGGTGAGCCCCTACCACACCTACCGGGCCGGGGACCCCTT < 41bp 0.509611033590946 0.746599912126288 0.025548726 0.060395658 prediction 0.473977757070683 Functional Gain - C1orf50 ENSG00000164008 CDS Human protein_coding chr1:43233241 chr1:43233242 nonsynonymous SNV 0.994 0 22 hm5C_associated_SNPs_112369 0 0 0 0 2 C1orf50 chr1:43233180 3'AG 43233180 Downstream 63bp
chr1 43233242 43233242 1 + C T rs144607714 43233241 + 43233221 43233261 41 CTGGTGAGCCCCTACCACACCCACCGGGCCGGGGACCCCTT CTGGTGAGCCCCTACCACACCTACCGGGCCGGGGACCCCTT < 41bp 0.509611033590946 0.746599912126288 0.025548726 0.060395658 prediction 0.473977757070683 Functional Gain - C1orf50 ENSG00000164008 CDS Human protein_coding chr1:43233241 chr1:43233242 nonsynonymous SNV 0.994 0 22 hm5C_associated_SNPs_112369 0 0 0 0 2 C1orf50 chr1:43233295 5'GT 43233295 Upstream 54bp
chrX 47444706 47444706 1 + C T LUSC 47444705 + 47444685 47444725 41 TACTTCCACAGGTCCCACAACCGCAGCGAGGAGTTTCTCAT TACTTCCACAGGTCCCACAACTGCAGCGAGGAGTTTCTCAT < 41bp 0.539812174433496 0.776798258090468 0.059969723 0.043869287 prediction 0.473972167313943 Functional Gain - TIMP1 ENSG00000102265 CDS Human protein_coding chrX:47444705 chrX:47444706 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_112371 0 0 1 0 1 TIMP1 chrX:47444730 5'GT 47444730 Upstream 25bp
chr7 129756485 129756485 1 + C T PRAD 129756484 + 129756464 129756504 41 GGCACAGATGGCTACATGCCCCGGGAATTGGCATCTATGTC GGCACAGATGGCTACATGCCCTGGGAATTGGCATCTATGTC < 41bp 0.505935479785707 0.742917454141424 0.3748842 0.04165569 prediction 0.473963948711434 Functional Gain - KLHDC10 ENSG00000128607 CDS Human protein_coding chr7:129756484 chr7:129756485 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_112372 0 0 1 0 1 KLHDC10 chr7:129756506 5'GT 129756506 Upstream 22bp
chr21 45706475 45706475 1 + C T SKCM 45706474 + 45706454 45706494 41 GAAGGAAAAGGAGGGCTGCCCCCAGGCCTTCCACGCCCTCC GAAGGAAAAGGAGGGCTGCCCTCAGGCCTTCCACGCCCTCC < 41bp 0.520318675358704 0.757293273118789 0.28038436 0.23670438 prediction 0.47394919552017 Functional Gain - AIRE ENSG00000160224 CDS Human protein_coding chr21:45706474 chr21:45706475 synonymous SNV . 0 22 hm5C_associated_SNPs_112376 0 0 0 0 1 AIRE chr21:45706440 3'AG 45706440 Downstream 36bp
chr15 25415777 25415777 1 + C A rs546932505 25415773 + 25415753 25415793 41 GCCCCCGGTGCGCTGAAGCTCAGGCCATTCCTGATGCCCTG GCCCCCGGTGCGCTGAAGCTCAGGACATTCCTGATGCCCTG < 41bp 0.648807020012371 0.885759247708323 0.87886953 0.879268 prediction 0.473904455391905 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25415773 chr15:25415777 . . 0 25 hm5C_associated_SNPs_112380 0 0 0 0 2 SNHG14 chr15:25415683 3'AG 25415683 Downstream 95bp
chr15 25415777 25415777 1 + C A rs546932505 25415773 + 25415753 25415793 41 GCCCCCGGTGCGCTGAAGCTCAGGCCATTCCTGATGCCCTG GCCCCCGGTGCGCTGAAGCTCAGGACATTCCTGATGCCCTG < 41bp 0.648807020012371 0.885759247708323 0.87886953 0.879268 prediction 0.473904455391905 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25415773 chr15:25415777 . . 0 25 hm5C_associated_SNPs_112380 0 0 0 0 2 SNHG14 chr15:25415813 5'GT 25415813 Upstream 37bp
chr1 206667311 206667311 1 + C T LUAD 206667310 + 206667290 206667330 41 TCTGACCTCCTGGACAACAACCGCATCATCGAACGGTAAGG TCTGACCTCCTGGACAACAACTGCATCATCGAACGGTAAGG < 41bp 0.47556143314018 0.736950553007149 0.12088391 0.20548466 prediction 0.473901106014299 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206667310 chr1:206667311 nonsynonymous SNV 0.825 0 22 hm5C_associated_SNPs_112382 0 0 0 0 2 IKBKE chr1:206667253 3'AG 206667253 Downstream 59bp
chr1 206667311 206667311 1 + C T LUAD 206667310 + 206667290 206667330 41 TCTGACCTCCTGGACAACAACCGCATCATCGAACGGTAAGG TCTGACCTCCTGGACAACAACTGCATCATCGAACGGTAAGG < 41bp 0.47556143314018 0.736950553007149 0.12088391 0.20548466 prediction 0.473901106014299 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206667310 chr1:206667311 nonsynonymous SNV 0.825 0 22 hm5C_associated_SNPs_112382 0 0 0 0 2 IKBKE chr1:206667324 5'GT 206667324 Upstream 14bp
chr15 90799479 90799479 1 + C A THCA 90799478 + 90799458 90799498 41 ATCTTCATTACCCGAAATCCCCGGGAGATCAAGCCAGGAGA ATCTTCATTACCCGAAATCCCAGGGAGATCAAGCCAGGAGA < 41bp 0.555392883910887 0.792336729872311 0.8836261 0.9162718 prediction 0.473887691922848 Functional Gain - TTLL13P ENSG00000213471 CDS Human protein_coding chr15:90799478 chr15:90799479 synonymous SNV . 0 22 hm5C_associated_SNPs_112383 0 0 0 0 1 TTLL13P chr15:90799529 5'GT 90799529 Upstream 51bp
chr7 138936723 138936723 1 + C T PAAD 138936722 + 138936702 138936742 41 GGTGGGAAACCCCGTAAACACCGGAAGGATCGGCTACAAGA GGTGGGAAACCCCGTAAACACTGGAAGGATCGGCTACAAGA < 41bp 0.501530678271403 0.738471847304837 0.25262392 0.17376003 prediction 0.473882338066868 Functional Gain - UBN2 ENSG00000157741 CDS Human protein_coding chr7:138936722 chr7:138936723 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112384 0 0 1 0 1 UBN2 chr7:138936803 5'GT 138936803 Upstream 81bp
chr16 78056572 78056572 1 + C A LIHC 78056571 + 78056551 78056591 41 ATCCTGGTGATCACCTTACTCCTGGACCAGACCACCAGCCA ATCCTGGTGATCACCTTACTCATGGACCAGACCACCAGCCA < 41bp 0.544124773411031 0.781063906961128 0.3628983 0.6600203 prediction 0.473878267100194 Functional Gain - CLEC3A ENSG00000166509 CDS Human protein_coding chr16:78056571 chr16:78056572 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_112385 0 0 0 0 1 CLEC3A chr16:78056638 5'GT 78056638 Upstream 67bp
chr11 76804839 76804839 1 + C T SKCM 76804838 + 76804818 76804858 41 GCCTGCTCGTCACTTGCCTCCCGGGAGTCGCTGTGGCAAAA GCCTGCTCGTCACTTGCCTCCTGGGAGTCGCTGTGGCAAAA < 41bp 0.534844493005166 0.771782636924928 0.88224745 0.83890724 prediction 0.473876287839522 Functional Gain - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76804838 chr11:76804839 nonsynonymous SNV 0.961 5 22 hm5C_associated_SNPs_112386 0 0 0 0 1 CAPN5 chr11:76804859 5'GT 76804859 Upstream 21bp
chr1 1226312 1226312 1 + C T rs150282282 1226311 + 1226291 1226331 41 CGCTAGGTGAACAGGGGCTGCCGCATCAGAGCCACAGACAG CGCTAGGTGAACAGGGGCTGCTGCATCAGAGCCACAGACAG < 41bp 0.501347058212606 0.738283827287783 0.18500197 0.11916384 prediction 0.473873538150355 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1226311 chr1:1226312 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_112387 0 0 0 0 2 SCNN1D chr1:1226275 3'AG 1226275 Downstream 38bp
chr1 1226312 1226312 1 + C T rs150282282 1226311 + 1226291 1226331 41 CGCTAGGTGAACAGGGGCTGCCGCATCAGAGCCACAGACAG CGCTAGGTGAACAGGGGCTGCTGCATCAGAGCCACAGACAG < 41bp 0.501347058212606 0.738283827287783 0.18500197 0.11916384 prediction 0.473873538150355 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1226311 chr1:1226312 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_112387 0 0 0 0 2 SCNN1D chr1:1226333 5'GT 1226333 Upstream 22bp
chr17 18138556 18138556 1 + C G GBM 18138555 + 18138535 18138575 41 CGGCCCACGTGGCCAGTGTCCCCGCCAAGCTGTGGGCCCGC CGGCCCACGTGGCCAGTGTCCGCGCCAAGCTGTGGGCCCGC < 41bp 0.417426686114547 0.736934045656615 0.4145727 0.5871328 prediction 0.47386809131323 Functional Gain - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18138555 chr17:18138556 nonsynonymous SNV 0.037 3 22 hm5C_associated_SNPs_112389 0 0 0 0 1 LLGL1 chr17:18138626 5'GT 18138626 Upstream 71bp
chr3 152150596 152150596 1 + C T SKCM 152150595 + 152150575 152150615 41 CCTGTTTCTCCAAGCCTGGTCCCGGCAGAGATCTTGCCGAC CCTGTTTCTCCAAGCCTGGTCTCGGCAGAGATCTTGCCGAC < 41bp 0.536672395456881 0.773602440723682 0.34136143 0.26874042 prediction 0.473860090533602 Functional Gain - MBNL1 ENSG00000152601 CDS Human protein_coding chr3:152150595 chr3:152150596 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_112392 0 0 1 0 1 MBNL1 chr3:152150506 3'AG 152150506 Downstream 91bp
chrX 69715265 69715265 1 + C A BLCA 69715264 + 69715244 69715284 41 GTCTGTGAAATCAGGACTTCCCGGGGTTAAGTGACGATTAT GTCTGTGAAATCAGGACTTCCAGGGGTTAAGTGACGATTAT < 41bp 0.481142094345588 0.736919562124168 0.92241883 0.9157003 prediction 0.473839124248335 Functional Gain - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69715264 chrX:69715265 nonsynonymous SNV 0.985 1 22 hm5C_associated_SNPs_112395 0 0 0 0 2 DLG3 chrX:69715258 3'AG 69715258 Downstream 8bp
chrX 69715265 69715265 1 + C A BLCA 69715264 + 69715244 69715284 41 GTCTGTGAAATCAGGACTTCCCGGGGTTAAGTGACGATTAT GTCTGTGAAATCAGGACTTCCAGGGGTTAAGTGACGATTAT < 41bp 0.481142094345588 0.736919562124168 0.92241883 0.9157003 prediction 0.473839124248335 Functional Gain - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69715264 chrX:69715265 nonsynonymous SNV 0.985 1 22 hm5C_associated_SNPs_112395 0 0 0 0 2 DLG3 chrX:69715303 5'GT 69715303 Upstream 39bp
chr10 129864438 129864438 1 + C T UCEC 129864437 + 129864417 129864457 41 GTTTTGGTCGACTACACCATCCGGAAGTTCTGCATACAGCC GTTTTGGTCGACTACACCATCTGGAAGTTCTGCATACAGCC < 41bp 0.552031122600001 0.788947343391196 0.7100884 0.7864517 prediction 0.473832441582389 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129864437 chr10:129864438 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_112397 0 0 0 1 2 PTPRE chr10:129864339 3'AG 129864339 Downstream 100bp
chr10 129864438 129864438 1 + C T UCEC 129864437 + 129864417 129864457 41 GTTTTGGTCGACTACACCATCCGGAAGTTCTGCATACAGCC GTTTTGGTCGACTACACCATCTGGAAGTTCTGCATACAGCC < 41bp 0.552031122600001 0.788947343391196 0.7100884 0.7864517 prediction 0.473832441582389 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129864437 chr10:129864438 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_112397 0 0 0 1 2 PTPRE chr10:129864458 5'GT 129864458 Upstream 21bp
chr2 172822974 172822974 1 + T C rs554545680 172822972 + 172822952 172822992 41 GGAGCTACGCTCTTTGCGACCGTAGGCTACATGACAGTCTA GGAGCTACGCTCTTTGCGACCGCAGGCTACATGACAGTCTA < 41bp 0.45723395464332 0.736911564442659 0.3080582 0.24647048 prediction 0.473823128885317 Functional Gain - HAT1 ENSG00000128708 CDS Human protein_coding chr2:172822972 chr2:172822974 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_112400 0 0 1 0 2 HAT1 chr2:172822930 3'AG 172822930 Downstream 45bp
chr2 172822974 172822974 1 + T C rs554545680 172822972 + 172822952 172822992 41 GGAGCTACGCTCTTTGCGACCGTAGGCTACATGACAGTCTA GGAGCTACGCTCTTTGCGACCGCAGGCTACATGACAGTCTA < 41bp 0.45723395464332 0.736911564442659 0.3080582 0.24647048 prediction 0.473823128885317 Functional Gain - HAT1 ENSG00000128708 CDS Human protein_coding chr2:172822972 chr2:172822974 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_112400 0 0 1 0 2 HAT1 chr2:172823034 5'GT 172823034 Upstream 61bp
chr16 66885582 66885582 1 + C T UCEC 66885581 + 66885561 66885601 41 TGACAGACAGGAGACGAGCACCCCAGCATGAATCGTCTGAC TGACAGACAGGAGACGAGCACTCCAGCATGAATCGTCTGAC < 41bp 0.579756011995788 0.816663303102188 0.12730345 0.86465645 prediction 0.473814582212799 Functional Gain - CA7 ENSG00000168748 CDS Human protein_coding chr16:66885581 chr16:66885582 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_112402 0 0 0 0 2 CA7 chr16:66885567 3'AG 66885567 Downstream 16bp
chr16 66885582 66885582 1 + C T UCEC 66885581 + 66885561 66885601 41 TGACAGACAGGAGACGAGCACCCCAGCATGAATCGTCTGAC TGACAGACAGGAGACGAGCACTCCAGCATGAATCGTCTGAC < 41bp 0.579756011995788 0.816663303102188 0.12730345 0.86465645 prediction 0.473814582212799 Functional Gain - CA7 ENSG00000168748 CDS Human protein_coding chr16:66885581 chr16:66885582 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_112402 0 0 0 0 2 CA7 chr16:66885629 5'GT 66885629 Upstream 48bp
chr2 103321035 103321035 1 + C A rs202139053 103321031 + 103321011 103321051 41 CTACAACAGACACAGTCTGACAGCCGACACAAGTGAGAGAC CTACAACAGACACAGTCTGACAGCAGACACAAGTGAGAGAC < 41bp 0.31776577767177 0.736903570436903 0.20094943 0.15459004 prediction 0.473807140873806 Functional Gain - SLC9A2 ENSG00000115616 CDS Human protein_coding chr2:103321031 chr2:103321035 synonymous SNV . 0 25 hm5C_associated_SNPs_112403 0 0 0 0 1 SLC9A2 chr2:103321003 3'AG 103321003 Downstream 33bp
chr12 108620789 108620789 1 + C A OV 108620785 + 108620765 108620805 41 AGGAGTACCCGCTGGCAGCTCTTGCAGGCACCGCCTGCCAC AGGAGTACCCGCTGGCAGCTCTTGAAGGCACCGCCTGCCAC < 41bp 0.317104916694648 0.736890213383458 0.5592833 0.7911544 prediction 0.473780426766915 Functional Gain - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108620785 chr12:108620789 nonsynonymous SNV 0.943 0 25 hm5C_associated_SNPs_112405 0 0 0 0 1 WSCD2 chr12:108620767 3'AG 108620767 Downstream 23bp
chr22 43525274 43525274 1 + C G BLCA 43525273 + 43525253 43525293 41 TGCTGCTGGCGCTGCTGCTGCCGCTGCTCAGCGGGGGCCTG TGCTGCTGGCGCTGCTGCTGCGGCTGCTCAGCGGGGGCCTG < 41bp 0.621493497898719 0.858382680786618 0.42813143 0.8827894 prediction 0.473778365775799 Functional Gain - BIK ENSG00000100290 CDS Human protein_coding chr22:43525273 chr22:43525274 nonsynonymous SNV 0.005 1 22 hm5C_associated_SNPs_112406 0 0 0 0 1 BIK chr22:43525219 3'AG 43525219 Downstream 56bp
chr11 47317095 47317095 1 + C T UCEC 47317094 + 47317074 47317114 41 GTGAGTCCAGCTGTTATGATCCGCAGCTCAAGTCAGGATTC GTGAGTCCAGCTGTTATGATCTGCAGCTCAAGTCAGGATTC < 41bp 0.553374321431107 0.790257010507699 0.13257328 0.18789062 prediction 0.473765378153185 Functional Gain - MADD ENSG00000110514 CDS Human protein_coding chr11:47317094 chr11:47317095 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_112408 0 0 1 0 4 MADD chr11:47317047 3'AG 47317047 Downstream 49bp
chr11 47317095 47317095 1 + C T UCEC 47317094 + 47317074 47317114 41 GTGAGTCCAGCTGTTATGATCCGCAGCTCAAGTCAGGATTC GTGAGTCCAGCTGTTATGATCTGCAGCTCAAGTCAGGATTC < 41bp 0.553374321431107 0.790257010507699 0.13257328 0.18789062 prediction 0.473765378153185 Functional Gain - MADD ENSG00000110514 CDS Human protein_coding chr11:47317094 chr11:47317095 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_112408 0 0 1 0 4 MADD chr11:47317118 5'GT 47317118 Upstream 24bp
chr11 47317095 47317095 1 + C T UCEC 47317094 + 47317074 47317114 41 GTGAGTCCAGCTGTTATGATCCGCAGCTCAAGTCAGGATTC GTGAGTCCAGCTGTTATGATCTGCAGCTCAAGTCAGGATTC < 41bp 0.553374321431107 0.790257010507699 0.13257328 0.18789062 prediction 0.473765378153185 Functional Gain - MADD ENSG00000110514 CDS Human protein_coding chr11:47317094 chr11:47317095 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_112408 0 0 1 0 4 MADD chr11:47317127 5'GT 47317127 Upstream 33bp
chr11 47317095 47317095 1 + C T UCEC 47317094 + 47317074 47317114 41 GTGAGTCCAGCTGTTATGATCCGCAGCTCAAGTCAGGATTC GTGAGTCCAGCTGTTATGATCTGCAGCTCAAGTCAGGATTC < 41bp 0.553374321431107 0.790257010507699 0.13257328 0.18789062 prediction 0.473765378153185 Functional Gain - MADD ENSG00000110514 CDS Human protein_coding chr11:47317094 chr11:47317095 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_112408 0 0 1 0 4 MADD chr11:47317130 5'GT 47317130 Upstream 36bp
chr1 111889598 111889598 1 + C A LIHC 111889597 + 111889577 111889617 41 TTTTTCCTCACTTCCATCCCCCGAATTTGATTGGGAACAAG TTTTTCCTCACTTCCATCCCCAGAATTTGATTGGGAACAAG < 41bp 0.48407818620255 0.736878526589867 0.14179757 0.505316 prediction 0.473757053179735 Functional Gain - PIFO ENSG00000173947 CDS Human protein_coding chr1:111889597 chr1:111889598 nonsynonymous SNV 0.155 2 22 hm5C_associated_SNPs_112413 0 0 0 0 2 PIFO chr1:111889532 3'AG 111889532 Downstream 67bp
chr1 111889598 111889598 1 + C A LIHC 111889597 + 111889577 111889617 41 TTTTTCCTCACTTCCATCCCCCGAATTTGATTGGGAACAAG TTTTTCCTCACTTCCATCCCCAGAATTTGATTGGGAACAAG < 41bp 0.48407818620255 0.736878526589867 0.14179757 0.505316 prediction 0.473757053179735 Functional Gain - PIFO ENSG00000173947 CDS Human protein_coding chr1:111889597 chr1:111889598 nonsynonymous SNV 0.155 2 22 hm5C_associated_SNPs_112413 0 0 0 0 2 PIFO chr1:111889671 5'GT 111889671 Upstream 74bp
chr8 28908604 28908604 1 + C A LIHC 28908600 + 28908580 28908620 41 GCTGTGGAAATGGCAGCAGTCAACCACACTATCTTGGCATT GCTGTGGAAATGGCAGCAGTCAACAACACTATCTTGGCATT < 41bp 0.339852315563695 0.736877297095664 0.09449875 0.10464573 prediction 0.473754594191329 Functional Gain - HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28908600 chr8:28908604 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_112414 0 0 1 0 1 HMBOX1 chr8:28908535 3'AG 28908535 Downstream 70bp
chr6 167709567 167709567 1 + C T GBM 167709566 + 167709546 167709586 41 TGCTGGGACTCGGGGCCGCCCCGCTGTGGTCTGCACAGTGC TGCTGGGACTCGGGGCCGCCCTGCTGTGGTCTGCACAGTGC < 41bp 0.481788313335544 0.736874732680402 0.8384676 0.890725 prediction 0.473749465360804 Functional Gain - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167709566 chr6:167709567 nonsynonymous SNV 0.266 2 22 hm5C_associated_SNPs_112415 0 0 1 0 1 UNC93A chr6:167709520 3'AG 167709520 Downstream 48bp
chr8 43211925 43211925 1 + C A LUSC 43211924 + 43211904 43211944 41 TCTGCTAGCCTATCAAAAATCCAGGATGCAGTTATTTCAGA TCTGCTAGCCTATCAAAAATCAAGGATGCAGTTATTTCAGA < 41bp 0.504556186215172 0.741430467664117 0.3004341 0.57223743 prediction 0.473748562897889 Functional Gain - POTEA ENSG00000188877 ncRNA_exonic Human polymorphic_pseudogene chr8:43211924 chr8:43211925 . . 0 22 hm5C_associated_SNPs_112416 0 0 0 0 1 POTEA chr8:43211902 3'AG 43211902 Downstream 24bp
chr10 89311913 89311913 1 + T C UCEC 89311911 + 89311891 89311931 41 CTTCTTCCACTGCTTTCTCTCATGGGCTACTTCAAAGACAA CTTCTTCCACTGCTTTCTCTCACGGGCTACTTCAAAGACAA < 41bp 0.469240971779391 0.736864631005343 0.9168966 0.82775533 prediction 0.473729262010685 Functional Gain - MINPP1 ENSG00000107789 CDS Human protein_coding chr10:89311911 chr10:89311913 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_112417 0 0 1 0 1 MINPP1 chr10:89311839 3'AG 89311839 Downstream 75bp
chr7 30830853 30830853 1 + C G rs61739692 30830852 + 30830832 30830872 41 ACCCAACCCCAAGAAGAGAGCCGGAAGGTCCCTGAGCTCTT ACCCAACCCCAAGAAGAGAGCGGGAAGGTCCCTGAGCTCTT < 41bp 0.641359907816225 0.878221983725403 0.2641827 0.43822902 prediction 0.473724151818357 Functional Gain - MINDY4 ENSG00000106125 CDS Human protein_coding chr7:30830852 chr7:30830853 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_112420 0 0 0 0 1 MINDY4 chr7:30830781 3'AG 30830781 Downstream 73bp
chr4 37831699 37831699 1 + T A BLCA 37831695 + 37831675 37831715 41 TGGGACAGCTGGCCTCCGAGCTGCTATGGGACCTGGAATTT TGGGACAGCTGGCCTCCGAGCTGCAATGGGACCTGGAATTT < 41bp 0.654341087947948 0.891198426440665 0.11654824 0.1650883 prediction 0.473714676985435 Functional Gain - PGM2 ENSG00000169299 CDS Human protein_coding chr4:37831695 chr4:37831699 synonymous SNV . 0 25 hm5C_associated_SNPs_112421 0 0 1 0 1 PGM2 chr4:37831753 5'GT 37831753 Upstream 55bp
chr8 48878827 48878827 1 + C T SKCM 48878826 + 48878806 48878846 41 GAGATGCAGGAGGCCTTCTTCCAGTGCCAAGTGTGTGCCCA GAGATGCAGGAGGCCTTCTTCTAGTGCCAAGTGTGTGCCCA < 41bp 0.545752085273027 0.782597635075481 0.42946938 0.43732283 prediction 0.473691099604908 Functional Gain - MCM4 ENSG00000104738 CDS Human protein_coding chr8:48878826 chr8:48878827 stopgain 0.999 1 22 hm5C_associated_SNPs_112427 0 0 1 0 1 MCM4 chr8:48878747 3'AG 48878747 Downstream 81bp
chr19 15763689 15763689 1 + C A COAD 15763688 + 15763668 15763708 41 CTGTACCACCTTGCAAAGCACCCGGAATACCAGGAGCGCTG CTGTACCACCTTGCAAAGCACACGGAATACCAGGAGCGCTG < 41bp 0.57562500761871 0.812468959957484 0.26417536 0.19328716 prediction 0.473687904677548 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15763688 chr19:15763689 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_112428 0 0 1 0 2 CYP4F3 chr19:15763633 3'AG 15763633 Downstream 57bp
chr19 15763689 15763689 1 + C A COAD 15763688 + 15763668 15763708 41 CTGTACCACCTTGCAAAGCACCCGGAATACCAGGAGCGCTG CTGTACCACCTTGCAAAGCACACGGAATACCAGGAGCGCTG < 41bp 0.57562500761871 0.812468959957484 0.26417536 0.19328716 prediction 0.473687904677548 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15763688 chr19:15763689 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_112428 0 0 1 0 2 CYP4F3 chr19:15763762 5'GT 15763762 Upstream 74bp
chr3 3168626 3168626 1 + C A rs116700990 3168622 + 3168602 3168642 41 TGGTGACGTCACCGCGTTCACCAGCCCGGAAGTGCGCGTGG TGGTGACGTCACCGCGTTCACCAGACCGGAAGTGCGCGTGG < 41bp 0.659768988570598 0.896596810431017 0.2512622 0.3479876 prediction 0.473655643720838 Functional Gain - TRNT1 ENSG00000072756 UTR5 Human protein_coding chr3:3168622 chr3:3168626 . . 0 25 hm5C_associated_SNPs_112430 0 0 0 0 1 TRNT1 chr3:3168674 5'GT 3168674 Upstream 49bp
chr19 36207454 36207454 1 + A G STAD 36207451 + 36207431 36207471 41 CGGCCATGACCAAGCACCTGCGGACACACGGGGCCGCTCCG CGGCCATGACCAAGCACCTGCGGGCACACGGGGCCGCTCCG < 41bp 0.517073851804811 0.753901666895081 0.88840353 0.93762404 prediction 0.473655630180539 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36207451 chr19:36207454 nonsynonymous SNV 0.978 4 24 hm5C_associated_SNPs_112431 0 0 0 0 1 ZBTB32 chr19:36207380 3'AG 36207380 Downstream 75bp
chr4 187173239 187173239 1 + C A GBM 187173235 + 187173215 187173255 41 TCTTCTTGGGGAGAGTGGCCCTGGCAGGTGAGCCTGCAGGT TCTTCTTGGGGAGAGTGGCCCTGGAAGGTGAGCCTGCAGGT < 41bp 0.695121997461009 0.931947298544075 0.44468397 0.75107133 prediction 0.473650602166131 Functional Gain - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187173235 chr4:187173239 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_112432 0 0 0 0 1 KLKB1 chr4:187173171 3'AG 187173171 Downstream 69bp
chr11 65727326 65727326 1 + C A COAD 65727325 + 65727305 65727345 41 GGGTGAGAATGGAGCACTCTCCTCAGAGGCCCCCAAGGACA GGGTGAGAATGGAGCACTCTCATCAGAGGCCCCCAAGGACA < 41bp 0.52300953449534 0.759827355044178 0.06850004 0.1837346 prediction 0.473635641097675 Functional Gain - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65727325 chr11:65727326 unknown 0.079 1 22 hm5C_associated_SNPs_112434 0 0 0 0 1 TSGA10IP chr11:65727288 3'AG 65727288 Downstream 39bp
chr6 35260699 35260699 1 + C T STAD 35260698 + 35260678 35260718 41 AGTCCGCCACCCAAACGACCCCGGATAGCTTACCTTTCGGA AGTCCGCCACCCAAACGACCCTGGATAGCTTACCTTTCGGA < 41bp 0.532845016670264 0.769660467257127 0.46795648 0.58643615 prediction 0.473630901173726 Functional Gain - ZNF76 ENSG00000065029 CDS Human protein_coding chr6:35260698 chr6:35260699 nonsynonymous SNV 0.474 1 22 hm5C_associated_SNPs_112435 0 0 1 0 1 ZNF76 chr6:35260658 3'AG 35260658 Downstream 42bp
chr2 183595807 183595807 1 + C G rs566811915 183595803 + 183595783 183595823 41 GCTTTTGCTGCTGGTATTGGCTGGCTGATCACTTTTTGTTC GCTTTTGCTGCTGGTATTGGCTGGGTGATCACTTTTTGTTC < 41bp 0.464227169310156 0.736814877128133 0.39835465 0.7417437 prediction 0.473629754256266 Functional Gain - DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183595803 chr2:183595807 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_112436 0 0 1 0 2 DNAJC10 chr2:183595757 3'AG 183595757 Downstream 51bp
chr2 183595807 183595807 1 + C G rs566811915 183595803 + 183595783 183595823 41 GCTTTTGCTGCTGGTATTGGCTGGCTGATCACTTTTTGTTC GCTTTTGCTGCTGGTATTGGCTGGGTGATCACTTTTTGTTC < 41bp 0.464227169310156 0.736814877128133 0.39835465 0.7417437 prediction 0.473629754256266 Functional Gain - DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183595803 chr2:183595807 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_112436 0 0 1 0 2 DNAJC10 chr2:183595834 5'GT 183595834 Upstream 28bp
chr20 61869826 61869826 1 + C G rs2273487 61869825 + 61869805 61869845 41 TCACTCCCAGCTGCTGGGCTCCTGGGTGAGCGCCACCTCTC TCACTCCCAGCTGCTGGGCTCGTGGGTGAGCGCCACCTCTC < 41bp 0.413348836971499 0.736811439476862 0.9102024 0.9363011 prediction 0.473622878953724 Functional Gain - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61869825 chr20:61869826 synonymous SNV . 0 22 hm5C_associated_SNPs_112438 0 0 0 0 2 BIRC7 chr20:61869748 3'AG 61869748 Downstream 79bp
chr20 61869826 61869826 1 + C G rs2273487 61869825 + 61869805 61869845 41 TCACTCCCAGCTGCTGGGCTCCTGGGTGAGCGCCACCTCTC TCACTCCCAGCTGCTGGGCTCGTGGGTGAGCGCCACCTCTC < 41bp 0.413348836971499 0.736811439476862 0.9102024 0.9363011 prediction 0.473622878953724 Functional Gain - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61869825 chr20:61869826 synonymous SNV . 0 22 hm5C_associated_SNPs_112438 0 0 0 0 2 BIRC7 chr20:61869829 5'GT 61869829 Upstream 4bp
chr14 65499349 65499349 1 + C G COAD 65499348 + 65499328 65499368 41 AAGCGCATACTGTGCTGCCTCCGTAGCCTCGCTGACCAACA AAGCGCATACTGTGCTGCCTCGGTAGCCTCGCTGACCAACA < 41bp 0.411483057777446 0.736809224617489 0.08159077 0.1436128 prediction 0.473618449234979 Functional Gain - CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65499348 chr14:65499349 synonymous SNV . 0 22 hm5C_associated_SNPs_112439 0 0 1 0 2 CHURC1-FNTB;FNTB chr14:65499328 3'AG 65499328 Downstream 22bp
chr14 65499349 65499349 1 + C G COAD 65499348 + 65499328 65499368 41 AAGCGCATACTGTGCTGCCTCCGTAGCCTCGCTGACCAACA AAGCGCATACTGTGCTGCCTCGGTAGCCTCGCTGACCAACA < 41bp 0.411483057777446 0.736809224617489 0.08159077 0.1436128 prediction 0.473618449234979 Functional Gain - CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65499348 chr14:65499349 synonymous SNV . 0 22 hm5C_associated_SNPs_112439 0 0 1 0 2 CHURC1-FNTB;FNTB chr14:65499414 5'GT 65499414 Upstream 66bp
chr2 11300636 11300636 1 + C T GBM 11300635 + 11300615 11300655 41 AGTGTTACTATGGGTATCCGCCGCTGACCTACCTGGAGTAC AGTGTTACTATGGGTATCCGCTGCTGACCTACCTGGAGTAC < 41bp 0.531490955499758 0.768288932358398 0.40372357 0.34320843 prediction 0.473595953717281 Functional Gain - PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11300635 chr2:11300636 nonsynonymous SNV 0.753 1 22 hm5C_associated_SNPs_112443 0 0 1 0 2 PQLC3 chr2:11300592 3'AG 11300592 Downstream 45bp
chr2 11300636 11300636 1 + C T GBM 11300635 + 11300615 11300655 41 AGTGTTACTATGGGTATCCGCCGCTGACCTACCTGGAGTAC AGTGTTACTATGGGTATCCGCTGCTGACCTACCTGGAGTAC < 41bp 0.531490955499758 0.768288932358398 0.40372357 0.34320843 prediction 0.473595953717281 Functional Gain - PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11300635 chr2:11300636 nonsynonymous SNV 0.753 1 22 hm5C_associated_SNPs_112443 0 0 1 0 2 PQLC3 chr2:11300674 5'GT 11300674 Upstream 39bp
chr16 20787326 20787326 1 + A G PAAD 20787323 + 20787303 20787343 41 ATCGGGTAATTCTGATTCTGCCCAGGGTCCCAGAGTGGTGG ATCGGGTAATTCTGATTCTGCCCGGGGTCCCAGAGTGGTGG < 41bp 0.489843829325373 0.736794404854265 0.0722858 0.33368915 prediction 0.473588809708529 Functional Gain - ACSM3 ENSG00000005187 CDS Human protein_coding chr16:20787323 chr16:20787326 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_112444 0 0 1 0 1 ACSM3 chr16:20787371 5'GT 20787371 Upstream 46bp
chr2 219614783 219614783 1 + T C STAD 219614781 + 219614761 219614801 41 GCATCAAAGGCCAGATGATTCGTGACCTTCTGAATCTGGCA GCATCAAAGGCCAGATGATTCGCGACCTTCTGAATCTGGCA < 41bp 0.599171794898899 0.835962292656009 0.059530526 0.17421418 prediction 0.473580995514219 Functional Gain - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219614781 chr2:219614783 synonymous SNV . 0 23 hm5C_associated_SNPs_112446 0 0 1 0 2 TTLL4 chr2:219614732 3'AG 219614732 Downstream 52bp
chr2 219614783 219614783 1 + T C STAD 219614781 + 219614761 219614801 41 GCATCAAAGGCCAGATGATTCGTGACCTTCTGAATCTGGCA GCATCAAAGGCCAGATGATTCGCGACCTTCTGAATCTGGCA < 41bp 0.599171794898899 0.835962292656009 0.059530526 0.17421418 prediction 0.473580995514219 Functional Gain - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219614781 chr2:219614783 synonymous SNV . 0 23 hm5C_associated_SNPs_112446 0 0 1 0 2 TTLL4 chr2:219614869 5'GT 219614869 Upstream 87bp
chr2 113671393 113671393 1 + C A OV 113671392 + 113671372 113671412 41 CGGCTGGAAGCCCCCTGGAACCAGGCCCAAGCCTCCCCACC CGGCTGGAAGCCCCCTGGAACAAGGCCCAAGCCTCCCCACC < 41bp 0.549221973572367 0.786011954828651 0.79315996 0.86026776 prediction 0.473579962512567 Functional Gain - IL37 ENSG00000125571 CDS Human protein_coding chr2:113671392 chr2:113671393 nonsynonymous SNV 0.001 3 22 hm5C_associated_SNPs_112447 0 0 0 0 2 IL37 chr2:113671369 3'AG 113671369 Downstream 25bp
chr2 113671393 113671393 1 + C A OV 113671392 + 113671372 113671412 41 CGGCTGGAAGCCCCCTGGAACCAGGCCCAAGCCTCCCCACC CGGCTGGAAGCCCCCTGGAACAAGGCCCAAGCCTCCCCACC < 41bp 0.549221973572367 0.786011954828651 0.79315996 0.86026776 prediction 0.473579962512567 Functional Gain - IL37 ENSG00000125571 CDS Human protein_coding chr2:113671392 chr2:113671393 nonsynonymous SNV 0.001 3 22 hm5C_associated_SNPs_112447 0 0 0 0 2 IL37 chr2:113671431 5'GT 113671431 Upstream 39bp
chr13 51826252 51826252 1 + T C UCEC 51826250 + 51826230 51826270 41 GTGAGGGACATAGGCGAGCTCGTGCCTCTCCTGCCCAACCC GTGAGGGACATAGGCGAGCTCGCGCCTCTCCTGCCCAACCC < 41bp 0.56964251285972 0.806430081312918 0.671033 0.64840573 prediction 0.473575136906396 Functional Gain - FAM124A ENSG00000150510 CDS Human protein_coding chr13:51826250 chr13:51826252 nonsynonymous SNV 0.945 3 23 hm5C_associated_SNPs_112449 0 0 1 0 1 FAM124A chr13:51826337 5'GT 51826337 Upstream 86bp
chr2 231742238 231742238 1 + C T LUAD 231742237 + 231742217 231742257 41 TGCAACGGGAAAGACACCTACCGGCTCCGGCGCCGGGCAAC TGCAACGGGAAAGACACCTACTGGCTCCGGCGCCGGGCAAC < 41bp 0.515152376631973 0.751938671823746 0.63601637 0.6363332 prediction 0.473572590383548 Functional Gain - ITM2C ENSG00000135916 CDS Human protein_coding chr2:231742237 chr2:231742238 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_112450 0 0 1 0 1 ITM2C chr2:231742265 5'GT 231742265 Upstream 28bp
chr13 37580078 37580078 1 + C A rs117135638 37580077 + 37580057 37580097 41 TTCCTAATGTGGATCTACCACCCCTGTGTTCATCGAGATTC TTCCTAATGTGGATCTACCACACCTGTGTTCATCGAGATTC < 41bp 0.549907114833033 0.786692109619508 0.0793179 0.097616315 prediction 0.47356998957295 Functional Gain - EXOSC8 ENSG00000120699 CDS Human protein_coding chr13:37580077 chr13:37580078 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_112451 0 0 1 0 2 EXOSC8 chr13:37580057 3'AG 37580057 Downstream 22bp
chr13 37580078 37580078 1 + C A rs117135638 37580077 + 37580057 37580097 41 TTCCTAATGTGGATCTACCACCCCTGTGTTCATCGAGATTC TTCCTAATGTGGATCTACCACACCTGTGTTCATCGAGATTC < 41bp 0.549907114833033 0.786692109619508 0.0793179 0.097616315 prediction 0.47356998957295 Functional Gain - EXOSC8 ENSG00000120699 CDS Human protein_coding chr13:37580077 chr13:37580078 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_112451 0 0 1 0 2 EXOSC8 chr13:37580162 5'GT 37580162 Upstream 85bp
chr1 156894779 156894779 1 + C A UCEC 156894775 + 156894755 156894795 41 AAGACCCTGACCACCTTCATCGAGCTCCTGCCTCTCTGTTC AAGACCCTGACCACCTTCATCGAGATCCTGCCTCTCTGTTC < 41bp 0.616283216615521 0.853064033503331 0.51694053 0.50689137 prediction 0.473561633775619 Functional Gain - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156894775 chr1:156894779 nonsynonymous SNV 0.860 1 25 hm5C_associated_SNPs_112453 0 0 0 0 2 LRRC71 chr1:156894730 3'AG 156894730 Downstream 50bp
chr1 156894779 156894779 1 + C A UCEC 156894775 + 156894755 156894795 41 AAGACCCTGACCACCTTCATCGAGCTCCTGCCTCTCTGTTC AAGACCCTGACCACCTTCATCGAGATCCTGCCTCTCTGTTC < 41bp 0.616283216615521 0.853064033503331 0.51694053 0.50689137 prediction 0.473561633775619 Functional Gain - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156894775 chr1:156894779 nonsynonymous SNV 0.860 1 25 hm5C_associated_SNPs_112453 0 0 0 0 2 LRRC71 chr1:156894807 5'GT 156894807 Upstream 29bp
chr2 79348713 79348713 1 + C A LUSC 79348712 + 79348692 79348732 41 AGAGGCCCAGACAGAGTTGCCCCAGGCCCGGATCAGCTGCC AGAGGCCCAGACAGAGTTGCCACAGGCCCGGATCAGCTGCC < 41bp 0.47364480665557 0.736776333856261 0.9114138 0.9414112 prediction 0.473552667712522 Functional Gain - REG1A ENSG00000115386 CDS Human protein_coding chr2:79348712 chr2:79348713 synonymous SNV . 0 22 hm5C_associated_SNPs_112454 0 0 0 0 2 REG1A chr2:79348688 3'AG 79348688 Downstream 26bp
chr2 79348713 79348713 1 + C A LUSC 79348712 + 79348692 79348732 41 AGAGGCCCAGACAGAGTTGCCCCAGGCCCGGATCAGCTGCC AGAGGCCCAGACAGAGTTGCCACAGGCCCGGATCAGCTGCC < 41bp 0.47364480665557 0.736776333856261 0.9114138 0.9414112 prediction 0.473552667712522 Functional Gain - REG1A ENSG00000115386 CDS Human protein_coding chr2:79348712 chr2:79348713 synonymous SNV . 0 22 hm5C_associated_SNPs_112454 0 0 0 0 2 REG1A chr2:79348806 5'GT 79348806 Upstream 94bp
chr1 150255916 150255916 1 + C T UCEC 150255915 + 150255895 150255935 41 ACCAGCATACACCATCTCATCCGAAACAGCGGGGTTCGGCT ACCAGCATACACCATCTCATCTGAAACAGCGGGGTTCGGCT < 41bp 0.507602081378059 0.744375427551246 0.028175533 0.039871097 prediction 0.473546692346375 Functional Gain - CIART ENSG00000159208 CDS Human protein_coding chr1:150255915 chr1:150255916 nonsynonymous SNV 0.983 0 22 hm5C_associated_SNPs_112455 0 0 0 0 1 CIART chr1:150255872 3'AG 150255872 Downstream 45bp
chr16 71954702 71954702 1 + C T UCEC 71954701 + 71954681 71954721 41 GGCAAGCTATGTAGGACCAACCAGATTGGAACTGTGAATGA GGCAAGCTATGTAGGACCAACTAGATTGGAACTGTGAATGA < 41bp 0.555206513369003 0.791979279983929 0.32315218 0.47811055 prediction 0.473545533229853 Functional Gain - IST1 ENSG00000182149 CDS Human protein_coding chr16:71954701 chr16:71954702 stopgain 0.998 1 22 hm5C_associated_SNPs_112456 0 0 1 0 1 IST1 chr16:71954642 3'AG 71954642 Downstream 61bp
chr2 131130764 131130764 1 + C T KIRP 131130763 + 131130743 131130783 41 CATTGGGAGGCCGAAGGGTCCCCGGGACCCGCCTGCTGAGT CATTGGGAGGCCGAAGGGTCCTCGGGACCCGCCTGCTGAGT < 41bp 0.503428890682659 0.740201377004094 0.35478166 0.22316667 prediction 0.473544972642869 Functional Gain - PTPN18 ENSG00000072135 CDS Human protein_coding chr2:131130763 chr2:131130764 synonymous SNV . 0 22 hm5C_associated_SNPs_112457 0 0 1 0 1 PTPN18 chr2:131130730 3'AG 131130730 Downstream 35bp
chrX 153059982 153059982 1 + C G rs782171979 153059978 + 153059958 153059998 41 GACCGCGACCAGCTGGGCCCCTGGCTCAGGGAGGGGCCACG GACCGCGACCAGCTGGGCCCCTGGGTCAGGGAGGGGCCACG < 41bp 0.607097192481466 0.84386929312423 0.35608423 0.64806306 prediction 0.473544201285527 Functional Gain - SSR4 ENSG00000180879 UTR5 Human protein_coding chrX:153059978 chrX:153059982 . . 0 25 hm5C_associated_SNPs_112458 0 0 0 0 1 SSR4 chrX:153060040 5'GT 153060040 Upstream 59bp
chr3 125643926 125643926 1 + C A HNSC 125643925 + 125643905 125643945 41 TGGCCTTTACTGTCCGCAACCCAGAGACATGCCAGCTGTTC TGGCCTTTACTGTCCGCAACCAAGAGACATGCCAGCTGTTC < 41bp 0.550806223650871 0.787567666558668 0.8406817 0.8939543 prediction 0.473522885815595 Functional Gain - FAM86JP ENSG00000171084 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:125643925 chr3:125643926 . . 0 22 hm5C_associated_SNPs_112463 0 0 0 2 1 FAM86JP chr3:125643958 5'GT 125643958 Upstream 33bp
chr2 54587378 54587378 1 + C A rs2280717 54587374 + 54587354 54587394 41 TGTACAGAGAGAGATAAAACCAGGCAGTAGGCCAACAGTTC TGTACAGAGAGAGATAAAACCAGGAAGTAGGCCAACAGTTC < 41bp 0.683357254344654 0.920108153644831 0.9080292 0.9162608 prediction 0.473501798600353 Functional Gain - C2orf73 ENSG00000177994 CDS Human protein_coding chr2:54587374 chr2:54587378 synonymous SNV . 0 25 hm5C_associated_SNPs_112465 0 0 0 0 1 C2orf73 chr2:54587340 3'AG 54587340 Downstream 39bp
chr8 25232157 25232157 1 + C A UCEC 25232153 + 25232133 25232173 41 CTGCCTACACGCTTCTCTTGCACGCTGAGCTTCTGCAGGTG CTGCCTACACGCTTCTCTTGCACGATGAGCTTCTGCAGGTG < 41bp 0.350822387173417 0.73674328131376 0.2170263 0.21405599 prediction 0.473486562627521 Functional Gain - DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25232153 chr8:25232157 nonsynonymous SNV 0.515 4 25 hm5C_associated_SNPs_112467 0 0 1 0 2 DOCK5 chr8:25232080 3'AG 25232080 Downstream 78bp
chr8 25232157 25232157 1 + C A UCEC 25232153 + 25232133 25232173 41 CTGCCTACACGCTTCTCTTGCACGCTGAGCTTCTGCAGGTG CTGCCTACACGCTTCTCTTGCACGATGAGCTTCTGCAGGTG < 41bp 0.350822387173417 0.73674328131376 0.2170263 0.21405599 prediction 0.473486562627521 Functional Gain - DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25232153 chr8:25232157 nonsynonymous SNV 0.515 4 25 hm5C_associated_SNPs_112467 0 0 1 0 2 DOCK5 chr8:25232170 5'GT 25232170 Upstream 14bp
chr10 99211925 99211925 1 + C T OV 99211924 + 99211904 99211944 41 TGTGTCCTGCCTCTCATCCTCCGAACCTACTCAGTGCCACG TGTGTCCTGCCTCTCATCCTCTGAACCTACTCAGTGCCACG < 41bp 0.49304620729136 0.736741557137398 0.27321094 0.38337556 prediction 0.473483114274795 Functional Gain - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99211924 chr10:99211925 stopgain 1.000 0 22 hm5C_associated_SNPs_112468 0 0 1 0 1 ZDHHC16 chr10:99211847 3'AG 99211847 Downstream 79bp
chr8 82670443 82670443 1 + C T BRCA 82670442 + 82670422 82670462 41 AATAAGAAGATGACAAATATCCGCCTTCCAAATGTGCCTTC AATAAGAAGATGACAAATATCTGCCTTCCAAATGTGCCTTC < 41bp 0.518195670504708 0.754933526383967 0.21130952 0.1861425 prediction 0.473475711758518 Functional Gain - CHMP4C ENSG00000164695 CDS Human protein_coding chr8:82670442 chr8:82670443 nonsynonymous SNV 0.005 1 22 hm5C_associated_SNPs_112471 0 0 0 0 2 CHMP4C chr8:82670377 3'AG 82670377 Downstream 67bp
chr8 82670443 82670443 1 + C T BRCA 82670442 + 82670422 82670462 41 AATAAGAAGATGACAAATATCCGCCTTCCAAATGTGCCTTC AATAAGAAGATGACAAATATCTGCCTTCCAAATGTGCCTTC < 41bp 0.518195670504708 0.754933526383967 0.21130952 0.1861425 prediction 0.473475711758518 Functional Gain - CHMP4C ENSG00000164695 CDS Human protein_coding chr8:82670442 chr8:82670443 nonsynonymous SNV 0.005 1 22 hm5C_associated_SNPs_112471 0 0 0 0 2 CHMP4C chr8:82670530 5'GT 82670530 Upstream 88bp
chr6 3015827 3015827 1 + C T SKCM 3015826 + 3015806 3015846 41 TGGATGGATAGGGTGCTGTGCCAGGGCTTTGCCTTTGACAT TGGATGGATAGGGTGCTGTGCTAGGGCTTTGCCTTTGACAT < 41bp 0.497096250215588 0.736737647039429 0.84938604 0.4344467 prediction 0.473475294078858 Functional Gain - NQO2 ENSG00000124588 CDS Human protein_coding chr6:3015826 chr6:3015827 stopgain 0.513 0 22 hm5C_associated_SNPs_112472 0 0 1 0 2 NQO2 chr6:3015764 3'AG 3015764 Downstream 64bp
chr6 3015827 3015827 1 + C T SKCM 3015826 + 3015806 3015846 41 TGGATGGATAGGGTGCTGTGCCAGGGCTTTGCCTTTGACAT TGGATGGATAGGGTGCTGTGCTAGGGCTTTGCCTTTGACAT < 41bp 0.497096250215588 0.736737647039429 0.84938604 0.4344467 prediction 0.473475294078858 Functional Gain - NQO2 ENSG00000124588 CDS Human protein_coding chr6:3015826 chr6:3015827 stopgain 0.513 0 22 hm5C_associated_SNPs_112472 0 0 1 0 2 NQO2 chr6:3015877 5'GT 3015877 Upstream 51bp
chr19 3282180 3282180 1 + C G COAD 3282176 + 3282156 3282196 41 CTCGGGCAGCTACCTGAGTCCCGGCGTGGCCTTCTCACCCT CTCGGGCAGCTACCTGAGTCCCGGGGTGGCCTTCTCACCCT < 41bp 0.621952025984386 0.858682235739652 0.73091096 0.9105284 prediction 0.473460419510532 Functional Gain - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3282176 chr19:3282180 synonymous SNV . 0 25 hm5C_associated_SNPs_112474 0 0 0 0 2 CELF5 chr19:3282124 3'AG 3282124 Downstream 57bp
chr19 3282180 3282180 1 + C G COAD 3282176 + 3282156 3282196 41 CTCGGGCAGCTACCTGAGTCCCGGCGTGGCCTTCTCACCCT CTCGGGCAGCTACCTGAGTCCCGGGGTGGCCTTCTCACCCT < 41bp 0.621952025984386 0.858682235739652 0.73091096 0.9105284 prediction 0.473460419510532 Functional Gain - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3282176 chr19:3282180 synonymous SNV . 0 25 hm5C_associated_SNPs_112474 0 0 0 0 2 CELF5 chr19:3282265 5'GT 3282265 Upstream 86bp
chr11 111845669 111845669 1 + A G COAD 111845666 + 111845646 111845686 41 CGGGCCCTAGTGCAGCAGTACGAAGGGCAACAAAGGTCCCC CGGGCCCTAGTGCAGCAGTACGAGGGGCAACAAAGGTCCCC < 41bp 0.51238812361578 0.749117926133458 0.576103 0.89560515 prediction 0.473459605035356 Functional Gain - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111845666 chr11:111845669 synonymous SNV . 0 24 hm5C_associated_SNPs_112475 0 0 1 0 2 DIXDC1 chr11:111845600 3'AG 111845600 Downstream 70bp
chr11 111845669 111845669 1 + A G COAD 111845666 + 111845646 111845686 41 CGGGCCCTAGTGCAGCAGTACGAAGGGCAACAAAGGTCCCC CGGGCCCTAGTGCAGCAGTACGAGGGGCAACAAAGGTCCCC < 41bp 0.51238812361578 0.749117926133458 0.576103 0.89560515 prediction 0.473459605035356 Functional Gain - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111845666 chr11:111845669 synonymous SNV . 0 24 hm5C_associated_SNPs_112475 0 0 1 0 2 DIXDC1 chr11:111845707 5'GT 111845707 Upstream 39bp
chr3 49060342 49060342 1 + A G COAD 49060339 + 49060319 49060359 41 GGTGGGGACTGGAGACCGGACCGAGAGGCTGCAGTCCCAGG GGTGGGGACTGGAGACCGGACCGGGAGGCTGCAGTCCCAGG < 41bp 0.514454635313946 0.75117696229448 0.3718546 0.8785991 prediction 0.473444653961068 Functional Gain - NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060339 chr3:49060342 nonsynonymous SNV 0.754 1 24 hm5C_associated_SNPs_112478 0 0 1 0 2 NDUFAF3 chr3:49060309 3'AG 49060309 Downstream 34bp
chr3 49060342 49060342 1 + A G COAD 49060339 + 49060319 49060359 41 GGTGGGGACTGGAGACCGGACCGAGAGGCTGCAGTCCCAGG GGTGGGGACTGGAGACCGGACCGGGAGGCTGCAGTCCCAGG < 41bp 0.514454635313946 0.75117696229448 0.3718546 0.8785991 prediction 0.473444653961068 Functional Gain - NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060339 chr3:49060342 nonsynonymous SNV 0.754 1 24 hm5C_associated_SNPs_112478 0 0 1 0 2 NDUFAF3 chr3:49060409 5'GT 49060409 Upstream 68bp
chr22 35943043 35943043 1 + C T UCEC 35943042 + 35943022 35943062 41 CACCGTAAGGTATACAACATCCGCGGCGACATGTACCAGCT CACCGTAAGGTATACAACATCTGCGGCGACATGTACCAGCT < 41bp 0.559917813038723 0.796632701465361 0.22994426 0.29868573 prediction 0.473429776853277 Functional Gain - RASD2 ENSG00000100302 CDS Human protein_coding chr22:35943042 chr22:35943043 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_112482 0 0 0 0 1 RASD2 chr22:35943127 5'GT 35943127 Upstream 85bp
chr20 13098238 13098238 1 + A G UCEC 13098235 + 13098215 13098255 41 ACCTCTACATAGATGAAGCTCACAGTATTGGGGCCGTGGGC ACCTCTACATAGATGAAGCTCACGGTATTGGGGCCGTGGGC < 41bp 0.490629093225242 0.736713638303941 0.24423489 0.43219364 prediction 0.473427276607882 Functional Gain - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13098235 chr20:13098238 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_112483 0 0 1 0 1 SPTLC3 chr20:13098153 3'AG 13098153 Downstream 86bp
chr1 41303409 41303409 1 + C A rs139835231 41303405 + 41303385 41303425 41 GAAGGGCGACAAGGGGCCCTCCGACGCGGAGGTGGTGGATG GAAGGGCGACAAGGGGCCCTCCGAAGCGGAGGTGGTGGATG < 41bp 0.337537882741132 0.736708002282969 0.16170314 0.3670985 prediction 0.473416004565937 Functional Gain - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41303405 chr1:41303409 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_112484 0 0 0 0 1 KCNQ4 chr1:41303466 5'GT 41303466 Upstream 58bp
chr22 38270460 38270460 1 + C T HNSC 38270459 + 38270439 38270479 41 TTCAGCCTGGTCGGGCTTCTCCGCCTGCACTCCCTGTTAGG TTCAGCCTGGTCGGGCTTCTCTGCCTGCACTCCCTGTTAGG < 41bp 0.477314315002217 0.736689255452145 0.1686464 0.11166769 prediction 0.47337851090429 Functional Gain - EIF3L ENSG00000100129 CDS Human protein_coding chr22:38270459 chr22:38270460 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_112491 0 0 1 0 2 EIF3L chr22:38270377 3'AG 38270377 Downstream 84bp
chr22 38270460 38270460 1 + C T HNSC 38270459 + 38270439 38270479 41 TTCAGCCTGGTCGGGCTTCTCCGCCTGCACTCCCTGTTAGG TTCAGCCTGGTCGGGCTTCTCTGCCTGCACTCCCTGTTAGG < 41bp 0.477314315002217 0.736689255452145 0.1686464 0.11166769 prediction 0.47337851090429 Functional Gain - EIF3L ENSG00000100129 CDS Human protein_coding chr22:38270459 chr22:38270460 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_112491 0 0 1 0 2 EIF3L chr22:38270531 5'GT 38270531 Upstream 72bp
chr3 9804662 9804662 1 - A T PRAD 9804666 - 9804646 9804686 41 CGGAGCGGGACGCCAGCCGCCTCATCTTCCAGGTGCTGGAT CGGAGCGGGACGCCAGCCGCCTCAACTTCCAGGTGCTGGAT < 41bp 0.381973711138487 0.736673305096462 0.07781607 0.15109366 prediction 0.473346610192924 Functional Gain - CAMK1 ENSG00000134072 CDS Human protein_coding chr3:9804666 chr3:9804662 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_112495 0 0 1 0 1 CAMK1 chr3:9804598 5'GT 9804598 Upstream 65bp
chr10 102584476 102584476 1 + C A UCEC 102584475 + 102584455 102584495 41 CCCACTGGCCAGGGAAGCTACCCCACCTCCACCCTGGCAGG CCCACTGGCCAGGGAAGCTACACCACCTCCACCCTGGCAGG < 41bp 0.482079205654766 0.736671534234476 0.19027609 0.191832 prediction 0.473343068468953 Functional Gain - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102584475 chr10:102584476 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_112496 0 0 0 0 1 PAX2 chr10:102584405 3'AG 102584405 Downstream 72bp
chrX 144903965 144903965 1 + C A BRCA 144903964 + 144903944 144903984 41 ATGCTGAGCGGCGTTTGGTTCCTCAGTGTGTTAACCGTGGC ATGCTGAGCGGCGTTTGGTTCATCAGTGTGTTAACCGTGGC < 41bp 0.514401428310257 0.751071556199166 0.13705829 0.14539304 prediction 0.473340255777817 Functional Gain - SLITRK2 ENSG00000185985 CDS Human protein_coding chrX:144903964 chrX:144903965 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_112498 0 0 0 0 2 SLITRK2 chrX:144903901 3'AG 144903901 Downstream 65bp
chrX 144903965 144903965 1 + C A BRCA 144903964 + 144903944 144903984 41 ATGCTGAGCGGCGTTTGGTTCCTCAGTGTGTTAACCGTGGC ATGCTGAGCGGCGTTTGGTTCATCAGTGTGTTAACCGTGGC < 41bp 0.514401428310257 0.751071556199166 0.13705829 0.14539304 prediction 0.473340255777817 Functional Gain - SLITRK2 ENSG00000185985 CDS Human protein_coding chrX:144903964 chrX:144903965 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_112498 0 0 0 0 2 SLITRK2 chrX:144903913 3'AG 144903913 Downstream 53bp
chr1 107937907 107937907 1 + C G LUSC 107937906 + 107937886 107937926 41 ATCAGGGCCGACCTTGGAGTCCAGGCTCCTATCTCCCCATC ATCAGGGCCGACCTTGGAGTCGAGGCTCCTATCTCCCCATC < 41bp 0.617968537841148 0.854632830465799 0.24454978 0.8053845 prediction 0.473328585249302 Functional Gain - NTNG1 ENSG00000162631 CDS Human protein_coding chr1:107937906 chr1:107937907 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_112500 0 0 0 2 1 NTNG1 chr1:107937948 5'GT 107937948 Upstream 42bp
chr4 1332318 1332318 1 + C T SKCM 1332317 + 1332297 1332337 41 CATGGCCCACTGTGCCAACTCCCGCCTGGTCTGCAAGATTT CATGGCCCACTGTGCCAACTCTCGCCTGGTCTGCAAGATTT < 41bp 0.47130797239215 0.736662862682015 0.08047509 0.12613615 prediction 0.473325725364031 Functional Gain - MAEA ENSG00000090316 CDS Human protein_coding chr4:1332317 chr4:1332318 synonymous SNV . 0 22 hm5C_associated_SNPs_112501 0 0 1 0 1 MAEA chr4:1332405 5'GT 1332405 Upstream 88bp
chr16 57597817 57597817 1 + C T GBM 57597816 + 57597796 57597836 41 CAGTTCCCCGCCGAGCTGACCCGGGACGCCTGCAAGACCCG CAGTTCCCCGCCGAGCTGACCTGGGACGCCTGCAAGACCCG < 41bp 0.503885137412444 0.740544463278671 0.76701355 0.8060156 prediction 0.473318651732455 Functional Gain - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57597816 chr16:57597817 nonsynonymous SNV 0.017 2 22 hm5C_associated_SNPs_112502 0 0 0 0 2 ADGRG5 chr16:57597760 3'AG 57597760 Downstream 58bp
chr16 57597817 57597817 1 + C T GBM 57597816 + 57597796 57597836 41 CAGTTCCCCGCCGAGCTGACCCGGGACGCCTGCAAGACCCG CAGTTCCCCGCCGAGCTGACCTGGGACGCCTGCAAGACCCG < 41bp 0.503885137412444 0.740544463278671 0.76701355 0.8060156 prediction 0.473318651732455 Functional Gain - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57597816 chr16:57597817 nonsynonymous SNV 0.017 2 22 hm5C_associated_SNPs_112502 0 0 0 0 2 ADGRG5 chr16:57597891 5'GT 57597891 Upstream 75bp
chr7 23313745 23313745 1 + C T rs78340800 23313744 + 23313724 23313764 41 AATGTGGTCAGAAGCAAAGGCCTGAGTGTCTTTCTCAACCG AATGTGGTCAGAAGCAAAGGCTTGAGTGTCTTTCTCAACCG < 41bp 0.512281938716027 0.748922872816623 0.04325244 0.05758688 prediction 0.473281868201191 Functional Gain - GPNMB ENSG00000136235 CDS Human protein_coding chr7:23313744 chr7:23313745 synonymous SNV . 0 22 hm5C_associated_SNPs_112504 0 0 0 0 1 GPNMB chr7:23313684 3'AG 23313684 Downstream 62bp
chr9 128728190 128728190 1 + T A ESCA 128728186 + 128728166 128728206 41 AGGCCCAGGAAGTGTGCACTCGGATACCTCTAACTAATCTC AGGCCCAGGAAGTGTGCACTCGGAAACCTCTAACTAATCTC < 41bp 0.626355771461115 0.862994476601119 0.081369966 0.050340652 prediction 0.473277410280007 Functional Gain - PBX3 ENSG00000167081 CDS Human protein_coding chr9:128728186 chr9:128728190 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_112506 0 0 1 1 1 PBX3 chr9:128728110 3'AG 128728110 Downstream 81bp
chr1 50659501 50659501 1 + C T CESC 50659500 + 50659480 50659520 41 ACCTCTATGTTAGCGGCCTTCCCAAAACCATGACCCAGAAG ACCTCTATGTTAGCGGCCTTCTCAAAACCATGACCCAGAAG < 41bp 0.58036901204543 0.817005106827837 0.22384572 0.4026102 prediction 0.473272189564812 Functional Gain - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50659500 chr1:50659501 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112507 0 0 0 0 2 ELAVL4 chr1:50659437 3'AG 50659437 Downstream 65bp
chr1 50659501 50659501 1 + C T CESC 50659500 + 50659480 50659520 41 ACCTCTATGTTAGCGGCCTTCCCAAAACCATGACCCAGAAG ACCTCTATGTTAGCGGCCTTCTCAAAACCATGACCCAGAAG < 41bp 0.58036901204543 0.817005106827837 0.22384572 0.4026102 prediction 0.473272189564812 Functional Gain - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50659500 chr1:50659501 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112507 0 0 0 0 2 ELAVL4 chr1:50659590 5'GT 50659590 Upstream 90bp
chr9 127975693 127975693 1 + C G rs139098107 127975692 + 127975672 127975712 41 ACCTGCAAGGGCCTCTTGCCCCGGTATGAACATGCTAGCTT ACCTGCAAGGGCCTCTTGCCCGGGTATGAACATGCTAGCTT < 41bp 0.636348505767785 0.872963201584293 0.22635311 0.8307462 prediction 0.473229391633015 Functional Gain - RABEPK ENSG00000136933 CDS Human protein_coding chr9:127975692 chr9:127975693 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_112515 0 0 1 0 1 RABEPK chr9:127975649 3'AG 127975649 Downstream 45bp
chr10 12257743 12257743 1 + C G ESCA 12257742 + 12257722 12257762 41 TTCTTCTCTCTCTGTAGGCACCAGAATTTCCTGAGTTTGCC TTCTTCTCTCTCTGTAGGCACGAGAATTTCCTGAGTTTGCC < 41bp 0.418221795604461 0.736610694990881 0.08291471 0.19732887 prediction 0.473221389981763 Functional Gain - CDC123 ENSG00000151465 CDS Human protein_coding chr10:12257742 chr10:12257743 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_112516 0 0 1 0 1 CDC123 chr10:12257739 3'AG 12257739 Downstream 5bp
chr1 214501057 214501057 1 + C G rs140909791 214501056 + 214501036 214501076 41 GAGCTGTACAGGAAATCAAGCCGGGAGAGGAGGTGAGTTCA GAGCTGTACAGGAAATCAAGCGGGGAGAGGAGGTGAGTTCA < 41bp 0.623676270097803 0.860279384149092 0.8171715 0.8948659 prediction 0.473206228102579 Functional Gain - SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214501056 chr1:214501057 nonsynonymous SNV 0.083 3 22 hm5C_associated_SNPs_112517 0 0 1 0 1 SMYD2 chr1:214501067 5'GT 214501067 Upstream 11bp
chr11 66241314 66241314 1 + C T BLCA 66241313 + 66241293 66241333 41 GCTTCTCCGAGGACTCAGCCCCGGGTGTCTGGCGGGAGATC GCTTCTCCGAGGACTCAGCCCTGGGTGTCTGGCGGGAGATC < 41bp 0.535523863301514 0.772124746796815 0.8859745 0.6767005 prediction 0.473201766990601 Functional Gain - PELI3 ENSG00000174516 CDS Human protein_coding chr11:66241313 chr11:66241314 nonsynonymous SNV 0.909 3 22 hm5C_associated_SNPs_112519 0 0 1 0 1 PELI3 chr11:66241396 5'GT 66241396 Upstream 83bp
chr10 70509403 70509403 1 + C T STAD 70509402 + 70509382 70509422 41 GGAGAGTTCGACGTGTTGTTCCACGTTACACAGTTCAGTTT GGAGAGTTCGACGTGTTGTTCTACGTTACACAGTTCAGTTT < 41bp 0.492495439218863 0.736587452349384 0.073806494 0.033256084 prediction 0.473174904698768 Functional Gain - CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70509402 chr10:70509403 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_112524 0 0 1 0 1 CCAR1 chr10:70509442 5'GT 70509442 Upstream 40bp
chr19 50386061 50386061 1 + C T COAD 50386060 + 50386040 50386080 41 CAACCGTGGAGCGGGGCCCTCCAGTTACAGAGGAGGAGTGG CAACCGTGGAGCGGGGCCCTCTAGTTACAGAGGAGGAGTGG < 41bp 0.531070640655697 0.767654142325875 0.23791105 0.32565564 prediction 0.473167003340357 Functional Gain - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50386060 chr19:50386061 nonsynonymous SNV 0.791 4 22 hm5C_associated_SNPs_112525 0 0 1 0 2 TBC1D17 chr19:50386021 3'AG 50386021 Downstream 41bp
chr19 50386061 50386061 1 + C T COAD 50386060 + 50386040 50386080 41 CAACCGTGGAGCGGGGCCCTCCAGTTACAGAGGAGGAGTGG CAACCGTGGAGCGGGGCCCTCTAGTTACAGAGGAGGAGTGG < 41bp 0.531070640655697 0.767654142325875 0.23791105 0.32565564 prediction 0.473167003340357 Functional Gain - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50386060 chr19:50386061 nonsynonymous SNV 0.791 4 22 hm5C_associated_SNPs_112525 0 0 1 0 2 TBC1D17 chr19:50386149 5'GT 50386149 Upstream 89bp
chr20 2375147 2375147 1 + C A LUSC 2375143 + 2375123 2375163 41 GCAGCGGTCGAGGAATGGCGCTGCCCACCACACCCAGGAGT GCAGCGGTCGAGGAATGGCGCTGCACACCACACCCAGGAGT < 41bp 0.320828150480513 0.736581181533039 0.36656058 0.33091295 prediction 0.473162363066077 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2375143 chr20:2375147 synonymous SNV . 0 25 hm5C_associated_SNPs_112526 0 0 0 0 1 TGM6 chr20:2375098 3'AG 2375098 Downstream 50bp
chr16 57503193 57503193 1 + C T COAD 57503192 + 57503172 57503212 41 AGACCTCATCTCCAACAGCCCCCGGGTCATTCCGGTCAGTG AGACCTCATCTCCAACAGCCCTCGGGTCATTCCGGTCAGTG < 41bp 0.557786902904493 0.794364857697617 0.16087356 0.07682723 prediction 0.47315590958625 Functional Gain - POLR2C ENSG00000102978 CDS Human protein_coding chr16:57503192 chr16:57503193 synonymous SNV . 0 22 hm5C_associated_SNPs_112527 0 0 1 0 1 POLR2C chr16:57503205 5'GT 57503205 Upstream 13bp
chr21 43999910 43999910 1 + C T SKCM 43999909 + 43999889 43999929 41 CAGCTACGGGGGACCAAGTTCCGTAAGTCCCACTCGGGCCC CAGCTACGGGGGACCAAGTTCTGTAAGTCCCACTCGGGCCC < 41bp 0.481479693028284 0.736565082828432 0.44096398 0.24443918 prediction 0.473130165656865 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43999909 chr21:43999910 nonsynonymous SNV 0.989 0 22 hm5C_associated_SNPs_112533 0 0 0 0 2 SLC37A1 chr21:43999846 3'AG 43999846 Downstream 65bp
chr21 43999910 43999910 1 + C T SKCM 43999909 + 43999889 43999929 41 CAGCTACGGGGGACCAAGTTCCGTAAGTCCCACTCGGGCCC CAGCTACGGGGGACCAAGTTCTGTAAGTCCCACTCGGGCCC < 41bp 0.481479693028284 0.736565082828432 0.44096398 0.24443918 prediction 0.473130165656865 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43999909 chr21:43999910 nonsynonymous SNV 0.989 0 22 hm5C_associated_SNPs_112533 0 0 0 0 2 SLC37A1 chr21:43999910 5'GT 43999910 Upstream 1bp
chr17 79078373 79078373 1 + C T UCEC 79078372 + 79078352 79078392 41 GCCGGCCTGGAGCGCAATGGCCGTATGCGGGTGAAGGCCAT GCCGGCCTGGAGCGCAATGGCTGTATGCGGGTGAAGGCCAT < 41bp 0.527877595759244 0.764437488301637 0.45241514 0.17951244 prediction 0.473119785084787 Functional Gain - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79078372 chr17:79078373 nonsynonymous SNV 0.582 4 22 hm5C_associated_SNPs_112535 0 0 1 0 2 BAIAP2 chr17:79078311 3'AG 79078311 Downstream 63bp
chr17 79078373 79078373 1 + C T UCEC 79078372 + 79078352 79078392 41 GCCGGCCTGGAGCGCAATGGCCGTATGCGGGTGAAGGCCAT GCCGGCCTGGAGCGCAATGGCTGTATGCGGGTGAAGGCCAT < 41bp 0.527877595759244 0.764437488301637 0.45241514 0.17951244 prediction 0.473119785084787 Functional Gain - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79078372 chr17:79078373 nonsynonymous SNV 0.582 4 22 hm5C_associated_SNPs_112535 0 0 1 0 2 BAIAP2 chr17:79078314 3'AG 79078314 Downstream 60bp
chr11 63963172 63963172 1 + C A UCEC 63963168 + 63963148 63963188 41 CTCAGCGTCCTCCTTGGGGTCGATCTGGGCAGTATGGATGA CTCAGCGTCCTCCTTGGGGTCGATATGGGCAGTATGGATGA < 41bp 0.316364520922845 0.736556410668844 0.3400554 0.2571993 prediction 0.473112821337689 Functional Gain - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63963168 chr11:63963172 nonsynonymous SNV 0.985 1 25 hm5C_associated_SNPs_112536 0 0 1 0 1 STIP1 chr11:63963117 3'AG 63963117 Downstream 56bp
chr1 111825931 111825931 1 + T C UCEC 111825929 + 111825909 111825949 41 TACCCGGACTACATCCATGTCATGACCTATGACCTCCATGG TACCCGGACTACATCCATGTCACGACCTATGACCTCCATGG < 41bp 0.529085018474255 0.765633848938968 0.13047808 0.066964686 prediction 0.473097660929428 Functional Gain - CHIAP2 ENSG00000203878 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:111825929 chr1:111825931 . . 0 23 hm5C_associated_SNPs_112537 0 0 0 1 1 CHIAP2 chr1:111825908 3'AG 111825908 Downstream 24bp
chr1 85564232 85564232 1 + C T GBM 85564231 + 85564211 85564251 41 AGCCTATGTTTCTCCTTGAACCGGAGAGTAATAAAGAAGCA AGCCTATGTTTCTCCTTGAACTGGAGAGTAATAAAGAAGCA < 41bp 0.510866658899825 0.747413244581993 0.7578951 0.21077615 prediction 0.473093171364336 Functional Gain - WDR63 ENSG00000162643 CDS Human protein_coding chr1:85564231 chr1:85564232 nonsynonymous SNV 0.969 2 22 hm5C_associated_SNPs_112538 0 0 0 0 1 WDR63 chr1:85564213 3'AG 85564213 Downstream 20bp
chr11 34668171 34668171 1 + C A THCA 34668167 + 34668147 34668187 41 AGCATGAGTTTGCAGGAGTTCACCCGGGCGGCAGGGACGGC AGCATGAGTTTGCAGGAGTTCACCAGGGCGGCAGGGACGGC < 41bp 0.701358451792412 0.937890027499558 0.34854499 0.39271393 prediction 0.473063151414292 Functional Gain - EHF ENSG00000135373 CDS Human protein_coding chr11:34668167 chr11:34668171 synonymous SNV . 0 25 hm5C_associated_SNPs_112540 0 0 0 0 1 EHF chr11:34668231 5'GT 34668231 Upstream 61bp
chr6 55113547 55113547 1 + C A HNSC 55113543 + 55113523 55113563 41 ACCATCACCTGCCTTCCAGCCACACTGGTCGTGGATATCAC ACCATCACCTGCCTTCCAGCCACAATGGTCGTGGATATCAC < 41bp 0.305171469206322 0.736529322237522 0.15160891 0.1537267 prediction 0.473058644475044 Functional Gain - HCRTR2 ENSG00000137252 CDS Human protein_coding chr6:55113543 chr6:55113547 nonsynonymous SNV 0.679 2 25 hm5C_associated_SNPs_112541 0 0 0 0 1 HCRTR2 chr6:55113615 5'GT 55113615 Upstream 69bp
chrX 48676757 48676757 1 + C T UCEC 48676756 + 48676736 48676776 41 AACGTGGCATGGAACGGGCCCCGCATGGGTGATGCTGACTA AACGTGGCATGGAACGGGCCCTGCATGGGTGATGCTGACTA < 41bp 0.551248361037538 0.787766786961231 0.06196922 0.13094744 prediction 0.473036851847386 Functional Gain - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48676756 chrX:48676757 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_112543 0 0 1 0 1 HDAC6 chrX:48676819 5'GT 48676819 Upstream 63bp
chr2 231281034 231281034 1 + T C STAD 231281032 + 231281012 231281052 41 ATGGCAGGTGGGGGCGGCGACCTGAGCACCAGGTGAGTCTT ATGGCAGGTGGGGGCGGCGACCCGAGCACCAGGTGAGTCTT < 41bp 0.498566040203268 0.736506467492201 0.69693154 0.87542987 prediction 0.473012934984401 Functional Gain - SP100 ENSG00000067066 CDS Human protein_coding chr2:231281032 chr2:231281034 nonsynonymous SNV 0.038 3 23 hm5C_associated_SNPs_112545 0 0 1 0 1 SP100 chr2:231281043 5'GT 231281043 Upstream 10bp
chr3 128749572 128749572 1 + C G rs201241847 128749571 + 128749551 128749591 41 AGGATTCCCAGCTCCCAACCCCGCAGCTAGCCAACCCAGAG AGGATTCCCAGCTCCCAACCCGGCAGCTAGCCAACCCAGAG < 41bp 0.419202266546871 0.736500263721076 0.11805129 0.4119164 prediction 0.473000527442152 Functional Gain - EFCC1 ENSG00000114654 CDS Human protein_coding chr3:128749571 chr3:128749572 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_112546 0 0 0 0 1 EFCC1 chr3:128749546 3'AG 128749546 Downstream 27bp
chr1 228033263 228033263 1 + C A LUAD 228033259 + 228033239 228033279 41 TACGGACACATGTCCTACATCATGCCCGACATGCTGTGTGC TACGGACACATGTCCTACATCATGACCGACATGCTGTGTGC < 41bp 0.328002737033736 0.736485180180753 0.20578596 0.1872065 prediction 0.472970360361507 Functional Gain - PRSS38 ENSG00000185888 CDS Human protein_coding chr1:228033259 chr1:228033263 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_112547 0 0 0 0 2 PRSS38 chr1:228033171 3'AG 228033171 Downstream 93bp
chr1 228033263 228033263 1 + C A LUAD 228033259 + 228033239 228033279 41 TACGGACACATGTCCTACATCATGCCCGACATGCTGTGTGC TACGGACACATGTCCTACATCATGACCGACATGCTGTGTGC < 41bp 0.328002737033736 0.736485180180753 0.20578596 0.1872065 prediction 0.472970360361507 Functional Gain - PRSS38 ENSG00000185888 CDS Human protein_coding chr1:228033259 chr1:228033263 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_112547 0 0 0 0 2 PRSS38 chr1:228033313 5'GT 228033313 Upstream 51bp
chr3 239772 239772 1 + C G rs574525732 239771 + 239751 239791 41 AGGAGCAGCAGCCGCGCGGGCCCAGGTACCCCCGCCCCAGA AGGAGCAGCAGCCGCGCGGGCGCAGGTACCCCCGCCCCAGA < 41bp 0.447663667750081 0.736465462560672 0.6488863 0.81715906 prediction 0.472930925121345 Functional Gain - CHL1 ENSG00000134121;ENSG00000134121 UTR5;UTR3 Human other chr3:239771 chr3:239772 . . 0 22 hm5C_associated_SNPs_112555 0 0 0 0 1 CHL1 chr3:239775 5'GT 239775 Upstream 4bp
chr1 32044836 32044836 1 + C G rs139742782 32044832 + 32044812 32044852 41 GCATGGAGGTCGTATCTATCCAGTCTTGGGAACGTACTGGG GCATGGAGGTCGTATCTATCCAGTGTTGGGAACGTACTGGG < 41bp 0.438585306974993 0.736452655080975 0.8743288 0.8417318 prediction 0.472905310161951 Functional Gain - TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32044832 chr1:32044836 synonymous SNV . 0 25 hm5C_associated_SNPs_112558 0 0 1 0 2 TINAGL1 chr1:32044805 3'AG 32044805 Downstream 32bp
chr1 32044836 32044836 1 + C G rs139742782 32044832 + 32044812 32044852 41 GCATGGAGGTCGTATCTATCCAGTCTTGGGAACGTACTGGG GCATGGAGGTCGTATCTATCCAGTGTTGGGAACGTACTGGG < 41bp 0.438585306974993 0.736452655080975 0.8743288 0.8417318 prediction 0.472905310161951 Functional Gain - TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32044832 chr1:32044836 synonymous SNV . 0 25 hm5C_associated_SNPs_112558 0 0 1 0 2 TINAGL1 chr1:32044868 5'GT 32044868 Upstream 33bp
chrX 48678568 48678568 1 + C T SARC 48678567 + 48678547 48678587 41 TTGATGCTGCACGGGGGGATCCGCTGGGGGGCTGCCAGGTG TTGATGCTGCACGGGGGGATCTGCTGGGGGGCTGCCAGGTG < 41bp 0.524770884485851 0.761220792811339 0.88532054 0.8903073 prediction 0.472899816650976 Functional Gain - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48678567 chrX:48678568 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_112560 0 0 1 0 2 HDAC6 chrX:48678513 3'AG 48678513 Downstream 56bp
chrX 48678568 48678568 1 + C T SARC 48678567 + 48678547 48678587 41 TTGATGCTGCACGGGGGGATCCGCTGGGGGGCTGCCAGGTG TTGATGCTGCACGGGGGGATCTGCTGGGGGGCTGCCAGGTG < 41bp 0.524770884485851 0.761220792811339 0.88532054 0.8903073 prediction 0.472899816650976 Functional Gain - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48678567 chrX:48678568 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_112560 0 0 1 0 2 HDAC6 chrX:48678662 5'GT 48678662 Upstream 95bp
chr11 118272373 118272373 1 + C A UCEC 118272369 + 118272349 118272389 41 GTTCGGGGCGACGGACTCTCCATTCCAGAACCATGGCCCAA GTTCGGGGCGACGGACTCTCCATTACAGAACCATGGCCCAA < 41bp 0.348929950857329 0.736449727962102 0.41253716 0.012251079 prediction 0.472899455924205 Functional Gain - LOC100131626 ENSG00000254873 CDS Human protein_coding chr11:118272369 chr11:118272373 stopgain . 0 25 hm5C_associated_SNPs_112561 0 0 1 0 1 ATP5L chr11:118272432 5'GT 118272432 Upstream 60bp
chr12 52451313 52451313 1 + C T UCEC 52451312 + 52451292 52451332 41 CTCTGCCCTTGTCCTCATCACCGGTGAGTGACCAGCACCAC CTCTGCCCTTGTCCTCATCACTGGTGAGTGACCAGCACCAC < 41bp 0.528625168233071 0.765072665359092 0.45705214 0.41075614 prediction 0.472894994252042 Functional Gain - NR4A1 ENSG00000123358 CDS Human protein_coding chr12:52451312 chr12:52451313 nonsynonymous SNV 0.958 0 22 hm5C_associated_SNPs_112563 0 0 0 0 1 NR4A1 chr12:52451314 5'GT 52451314 Upstream 2bp
chr11 129722454 129722454 1 + C T SKCM 129722453 + 129722433 129722473 41 TGTGTTGGTCAGTGAAGTACCCGCTGAAGTACTTTAGCCAC TGTGTTGGTCAGTGAAGTACCTGCTGAAGTACTTTAGCCAC < 41bp 0.512951873264771 0.749399341236988 0.28097397 0.3909757 prediction 0.472894935944433 Functional Gain - TMEM45B ENSG00000151715 CDS Human protein_coding chr11:129722453 chr11:129722454 nonsynonymous SNV 0.741 1 22 hm5C_associated_SNPs_112564 0 0 1 0 1 TMEM45B chr11:129722370 3'AG 129722370 Downstream 85bp
chr19 39907036 39907036 1 + C T rs2277743 39907035 + 39907015 39907055 41 CAGCAGCGCCGGGGGTATTGCCGAGTGCTTCGTGCAGAGGG CAGCAGCGCCGGGGGTATTGCTGAGTGCTTCGTGCAGAGGG < 41bp 0.516870725881048 0.753316100559129 0.8878073 0.48141143 prediction 0.472890749356163 Functional Gain - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39907035 chr19:39907036 synonymous SNV . 0 22 hm5C_associated_SNPs_112565 0 0 1 0 1 PLEKHG2 chr19:39906988 3'AG 39906988 Downstream 49bp
chr11 57243663 57243663 1 + T C PRAD 57243661 + 57243641 57243681 41 TTGTTCGCGGACCTGGCCAACCTGAGCCACCTCTTCCTCCA TTGTTCGCGGACCTGGCCAACCCGAGCCACCTCTTCCTCCA < 41bp 0.474228678986494 0.736442988023489 0.25459188 0.27155054 prediction 0.472885976046978 Functional Gain - RTN4RL2 ENSG00000186907 CDS Human protein_coding chr11:57243661 chr11:57243663 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_112566 0 0 1 0 1 RTN4RL2 chr11:57243635 3'AG 57243635 Downstream 29bp
chr22 29628260 29628260 1 + C G rs76367973 29628259 + 29628239 29628279 41 TTGCAGGTCCACAGGGCCCCCCAGGGAGCCCTGGCCGGGCT TTGCAGGTCCACAGGGCCCCCGAGGGAGCCCTGGCCGGGCT < 41bp 0.645195095456751 0.881634263201905 0.6293588 0.90420467 prediction 0.472878335490308 Functional Gain - EMID1 ENSG00000186998 CDS Human protein_coding chr22:29628259 chr22:29628260 nonsynonymous SNV 0.988 4 22 hm5C_associated_SNPs_112569 0 0 0 0 1 EMID1 chr22:29628245 3'AG 29628245 Downstream 16bp
chr16 69317969 69317969 1 + C T COAD 69317968 + 69317948 69317988 41 TAGGTTGGTTCATTCTGGCTCCGGATGTCGATCCCCCTCCC TAGGTTGGTTCATTCTGGCTCTGGATGTCGATCCCCCTCCC < 41bp 0.534553515609741 0.770990748055427 0.750822 0.4952725 prediction 0.472874464891372 Functional Gain - SNTB2 ENSG00000168807 CDS Human protein_coding chr16:69317968 chr16:69317969 synonymous SNV . 0 22 hm5C_associated_SNPs_112571 0 0 1 0 1 SNTB2 chr16:69317951 3'AG 69317951 Downstream 19bp
chr9 139699244 139699244 1 + C G rs200940788 139699243 + 139699223 139699263 41 GACTTGGACTTCCCCTCGAACCTGATGAGCACGGAGACCCT GACTTGGACTTCCCCTCGAACGTGATGAGCACGGAGACCCT < 41bp 0.411630359618342 0.736436330012416 0.1423282 0.3157369 prediction 0.472872660024833 Functional Gain - CCDC183 ENSG00000213213 CDS Human protein_coding chr9:139699243 chr9:139699244 nonsynonymous SNV 0.385 0 22 hm5C_associated_SNPs_112572 0 0 1 0 2 CCDC183 chr9:139699214 3'AG 139699214 Downstream 31bp
chr9 139699244 139699244 1 + C G rs200940788 139699243 + 139699223 139699263 41 GACTTGGACTTCCCCTCGAACCTGATGAGCACGGAGACCCT GACTTGGACTTCCCCTCGAACGTGATGAGCACGGAGACCCT < 41bp 0.411630359618342 0.736436330012416 0.1423282 0.3157369 prediction 0.472872660024833 Functional Gain - CCDC183 ENSG00000213213 CDS Human protein_coding chr9:139699243 chr9:139699244 nonsynonymous SNV 0.385 0 22 hm5C_associated_SNPs_112572 0 0 1 0 2 CCDC183 chr9:139699268 5'GT 139699268 Upstream 25bp
chr3 38416727 38416727 1 + C A BLCA 38416726 + 38416706 38416746 41 CTTCTGCAACCCGGTTGACTCCCAGCACTACATGGCACTCC CTTCTGCAACCCGGTTGACTCACAGCACTACATGGCACTCC < 41bp 0.471865758197812 0.736432491715238 0.064525425 0.11539811 prediction 0.472864983430476 Functional Gain - XYLB ENSG00000093217 CDS Human protein_coding chr3:38416726 chr3:38416727 synonymous SNV . 0 22 hm5C_associated_SNPs_112574 0 0 1 0 2 XYLB chr3:38416635 3'AG 38416635 Downstream 93bp
chr3 38416727 38416727 1 + C A BLCA 38416726 + 38416706 38416746 41 CTTCTGCAACCCGGTTGACTCCCAGCACTACATGGCACTCC CTTCTGCAACCCGGTTGACTCACAGCACTACATGGCACTCC < 41bp 0.471865758197812 0.736432491715238 0.064525425 0.11539811 prediction 0.472864983430476 Functional Gain - XYLB ENSG00000093217 CDS Human protein_coding chr3:38416726 chr3:38416727 synonymous SNV . 0 22 hm5C_associated_SNPs_112574 0 0 1 0 2 XYLB chr3:38416750 5'GT 38416750 Upstream 24bp
chr3 50388901 50388901 1 + C A COAD 50388900 + 50388880 50388920 41 GAGACCGAGTCACACATCTACCGAGCTCTGCGTACTGCTTC GAGACCGAGTCACACATCTACAGAGCTCTGCGTACTGCTTC < 41bp 0.546787389470043 0.78321834636823 0.24223217 0.44941148 prediction 0.472861913796375 Functional Gain - CYB561D2 ENSG00000114395;ENSG00000272104 CDS Human other chr3:50388900 chr3:50388901 synonymous SNV . 0 22 hm5C_associated_SNPs_112575 0 0 1 0 2 CYB561D2 chr3:50388840 3'AG 50388840 Downstream 62bp
chr3 50388901 50388901 1 + C A COAD 50388900 + 50388880 50388920 41 GAGACCGAGTCACACATCTACCGAGCTCTGCGTACTGCTTC GAGACCGAGTCACACATCTACAGAGCTCTGCGTACTGCTTC < 41bp 0.546787389470043 0.78321834636823 0.24223217 0.44941148 prediction 0.472861913796375 Functional Gain - CYB561D2 ENSG00000114395;ENSG00000272104 CDS Human other chr3:50388900 chr3:50388901 synonymous SNV . 0 22 hm5C_associated_SNPs_112575 0 0 1 0 2 CYB561D2 chr3:50388991 5'GT 50388991 Upstream 91bp
chr3 40503481 40503481 1 + C A UCEC 40503480 + 40503460 40503500 41 AAGCTTCAAAAGGCAGCTCTCCTGAAAGCTTCTCCCAAAAA AAGCTTCAAAAGGCAGCTCTCATGAAAGCTTCTCCCAAAAA < 41bp 0.537738006899922 0.774168774613421 0.12487391 0.3260548 prediction 0.472861535426998 Functional Gain - RPL14 ENSG00000188846 CDS Human other chr3:40503480 chr3:40503481 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_112576 0 0 0 0 1 RPL14 chr3:40503430 3'AG 40503430 Downstream 52bp
chr8 28906493 28906493 1 + T C UCEC 28906491 + 28906471 28906511 41 AAGCAGCAATCCTGGAGAGTCATGGGATAGATGTGCAGAGT AAGCAGCAATCCTGGAGAGTCACGGGATAGATGTGCAGAGT < 41bp 0.467094269971621 0.736430539825329 0.8028351 0.85915256 prediction 0.472861079650658 Functional Gain - HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906491 chr8:28906493 synonymous SNV . 0 23 hm5C_associated_SNPs_112577 0 0 1 0 4 HMBOX1 chr8:28906471 3'AG 28906471 Downstream 23bp
chr8 28906493 28906493 1 + T C UCEC 28906491 + 28906471 28906511 41 AAGCAGCAATCCTGGAGAGTCATGGGATAGATGTGCAGAGT AAGCAGCAATCCTGGAGAGTCACGGGATAGATGTGCAGAGT < 41bp 0.467094269971621 0.736430539825329 0.8028351 0.85915256 prediction 0.472861079650658 Functional Gain - HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906491 chr8:28906493 synonymous SNV . 0 23 hm5C_associated_SNPs_112577 0 0 1 0 4 HMBOX1 chr8:28906474 3'AG 28906474 Downstream 20bp
chr8 28906493 28906493 1 + T C UCEC 28906491 + 28906471 28906511 41 AAGCAGCAATCCTGGAGAGTCATGGGATAGATGTGCAGAGT AAGCAGCAATCCTGGAGAGTCACGGGATAGATGTGCAGAGT < 41bp 0.467094269971621 0.736430539825329 0.8028351 0.85915256 prediction 0.472861079650658 Functional Gain - HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906491 chr8:28906493 synonymous SNV . 0 23 hm5C_associated_SNPs_112577 0 0 1 0 4 HMBOX1 chr8:28906477 3'AG 28906477 Downstream 17bp
chr8 28906493 28906493 1 + T C UCEC 28906491 + 28906471 28906511 41 AAGCAGCAATCCTGGAGAGTCATGGGATAGATGTGCAGAGT AAGCAGCAATCCTGGAGAGTCACGGGATAGATGTGCAGAGT < 41bp 0.467094269971621 0.736430539825329 0.8028351 0.85915256 prediction 0.472861079650658 Functional Gain - HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906491 chr8:28906493 synonymous SNV . 0 23 hm5C_associated_SNPs_112577 0 0 1 0 4 HMBOX1 chr8:28906565 5'GT 28906565 Upstream 73bp
chr18 72228167 72228167 1 + T C CESC 72228165 + 72228145 72228185 41 AGCGATCCCACGAAAGGCACCGTGTGCTTCTACGGCCACTT AGCGATCCCACGAAAGGCACCGCGTGCTTCTACGGCCACTT < 41bp 0.472488499202175 0.736427029687484 0.3677166 0.32550785 prediction 0.472854059374968 Functional Gain - CNDP1 ENSG00000150656 CDS Human protein_coding chr18:72228165 chr18:72228167 nonsynonymous SNV 0.805 4 23 hm5C_associated_SNPs_112579 0 0 0 0 2 CNDP1 chr18:72228091 3'AG 72228091 Downstream 77bp
chr18 72228167 72228167 1 + T C CESC 72228165 + 72228145 72228185 41 AGCGATCCCACGAAAGGCACCGTGTGCTTCTACGGCCACTT AGCGATCCCACGAAAGGCACCGCGTGCTTCTACGGCCACTT < 41bp 0.472488499202175 0.736427029687484 0.3677166 0.32550785 prediction 0.472854059374968 Functional Gain - CNDP1 ENSG00000150656 CDS Human protein_coding chr18:72228165 chr18:72228167 nonsynonymous SNV 0.805 4 23 hm5C_associated_SNPs_112579 0 0 0 0 2 CNDP1 chr18:72228253 5'GT 72228253 Upstream 87bp
chr18 56816839 56816839 1 + T C UCEC 56816837 + 56816817 56816857 41 CTCACAGGCAGTGAGAGCCCCATCGTGGTGGTGCTGAGGTA CTCACAGGCAGTGAGAGCCCCACCGTGGTGGTGCTGAGGTA < 41bp 0.576440343482956 0.812866642017949 0.05628547 0.047565162 prediction 0.472852597069987 Functional Gain - SEC11C ENSG00000166562 CDS Human protein_coding chr18:56816837 chr18:56816839 nonsynonymous SNV 0.555 2 23 hm5C_associated_SNPs_112580 0 0 1 0 2 SEC11C chr18:56816745 3'AG 56816745 Downstream 95bp
chr18 56816839 56816839 1 + T C UCEC 56816837 + 56816817 56816857 41 CTCACAGGCAGTGAGAGCCCCATCGTGGTGGTGCTGAGGTA CTCACAGGCAGTGAGAGCCCCACCGTGGTGGTGCTGAGGTA < 41bp 0.576440343482956 0.812866642017949 0.05628547 0.047565162 prediction 0.472852597069987 Functional Gain - SEC11C ENSG00000166562 CDS Human protein_coding chr18:56816837 chr18:56816839 nonsynonymous SNV 0.555 2 23 hm5C_associated_SNPs_112580 0 0 1 0 2 SEC11C chr18:56816854 5'GT 56816854 Upstream 16bp
chr20 44259522 44259522 1 + C T SKCM 44259521 + 44259501 44259541 41 CTTGTCAGAAACACAGCTATCCCCAGAAATCAAAGTCTGCC CTTGTCAGAAACACAGCTATCTCCAGAAATCAAAGTCTGCC < 41bp 0.513550206570472 0.749974938608432 0.18845257 0.88992363 prediction 0.47284946407592 Functional Gain - WFDC10A ENSG00000180305 CDS Human protein_coding chr20:44259521 chr20:44259522 synonymous SNV . 0 22 hm5C_associated_SNPs_112582 0 0 0 0 1 WFDC10A chr20:44259509 3'AG 44259509 Downstream 14bp
chr17 78399410 78399410 1 + C T SKCM 78399409 + 78399389 78399429 41 GCAGGTTCCGGATCCCAGAGCCCGTGCGCCAGGTGGGTGTG GCAGGTTCCGGATCCCAGAGCTCGTGCGCCAGGTGGGTGTG < 41bp 0.534919031497557 0.771324071426016 0.36714548 0.44224888 prediction 0.472810079856917 Functional Gain - ENDOV ENSG00000173818 CDS Human protein_coding chr17:78399409 chr17:78399410 nonsynonymous SNV 0.257 4 22 hm5C_associated_SNPs_112586 0 0 0 0 1 ENDOV chr17:78399420 5'GT 78399420 Upstream 11bp
chr10 72489928 72489928 1 + A G STAD 72489925 + 72489905 72489945 41 GGTGTGTCGCTGGGCACACTCCCAGCAGCGCCAGGACCCCA GGTGTGTCGCTGGGCACACTCCCGGCAGCGCCAGGACCCCA < 41bp 0.534802234640485 0.771203371805182 0.0273014 0.09950185 prediction 0.472802274329395 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72489925 chr10:72489928 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_112587 0 0 0 0 3 ADAMTS14 chr10:72489858 3'AG 72489858 Downstream 71bp
chr10 72489928 72489928 1 + A G STAD 72489925 + 72489905 72489945 41 GGTGTGTCGCTGGGCACACTCCCAGCAGCGCCAGGACCCCA GGTGTGTCGCTGGGCACACTCCCGGCAGCGCCAGGACCCCA < 41bp 0.534802234640485 0.771203371805182 0.0273014 0.09950185 prediction 0.472802274329395 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72489925 chr10:72489928 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_112587 0 0 0 0 3 ADAMTS14 chr10:72490005 5'GT 72490005 Upstream 78bp
chr10 72489928 72489928 1 + A G STAD 72489925 + 72489905 72489945 41 GGTGTGTCGCTGGGCACACTCCCAGCAGCGCCAGGACCCCA GGTGTGTCGCTGGGCACACTCCCGGCAGCGCCAGGACCCCA < 41bp 0.534802234640485 0.771203371805182 0.0273014 0.09950185 prediction 0.472802274329395 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72489925 chr10:72489928 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_112587 0 0 0 0 3 ADAMTS14 chr10:72490014 5'GT 72490014 Upstream 87bp
chr8 11841998 11841998 1 + C A rs371844029 11841997 + 11841977 11842017 41 TGGCGACTGCAAGGTACTTGCCGGCCAAAATGTCTAAAAAA TGGCGACTGCAAGGTACTTGCAGGCCAAAATGTCTAAAAAA < 41bp 0.482528725595494 0.736387849598633 0.15339777 0.72712934 prediction 0.472775699197267 Functional Gain - DEFB135 ENSG00000205883 CDS Human protein_coding chr8:11841997 chr8:11841998 synonymous SNV . 0 22 hm5C_associated_SNPs_112591 0 0 1 0 1 DEFB135 chr8:11841930 3'AG 11841930 Downstream 69bp
chr4 155665935 155665935 1 + C T LUSC 155665934 + 155665914 155665954 41 GAAAAGCTGCTGGGCTTTACCCCCTACAGCCTGCTGTGGAA GAAAAGCTGCTGGGCTTTACCTCCTACAGCCTGCTGTGGAA < 41bp 0.531372113274321 0.767756580650748 0.19652295 0.25550836 prediction 0.472768934752854 Functional Gain - LRAT ENSG00000121207 CDS Human protein_coding chr4:155665934 chr4:155665935 nonsynonymous SNV 0.066 0 22 hm5C_associated_SNPs_112593 0 0 0 0 1 LRAT chr4:155666018 5'GT 155666018 Upstream 84bp
chr6 124979424 124979424 1 + T A GBM 124979420 + 124979400 124979440 41 ATGTACGGTGACGTCAGTGACACCTGCCCCAGACTGGGCCC ATGTACGGTGACGTCAGTGACACCAGCCCCAGACTGGGCCC < 41bp 0.490254936746338 0.73638054140835 0.08511123 0.17824122 prediction 0.472761082816699 Functional Gain - NKAIN2 ENSG00000188580 CDS Human protein_coding chr6:124979420 chr6:124979424 synonymous SNV . 0 25 hm5C_associated_SNPs_112596 0 0 0 0 1 NKAIN2 chr6:124979332 3'AG 124979332 Downstream 93bp
chr5 167855772 167855772 1 + C T SKCM 167855771 + 167855751 167855791 41 ATCGGAAGCAGTGGGTGCGACCCGAATTCAGATTGCCCTGA ATCGGAAGCAGTGGGTGCGACTCGAATTCAGATTGCCCTGA < 41bp 0.569681104580667 0.806053950902716 0.14166614 0.8907852 prediction 0.472745692644099 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167855771 chr5:167855772 synonymous SNV . 0 22 hm5C_associated_SNPs_112597 0 0 0 0 2 WWC1 chr5:167855712 3'AG 167855712 Downstream 61bp
chr5 167855772 167855772 1 + C T SKCM 167855771 + 167855751 167855791 41 ATCGGAAGCAGTGGGTGCGACCCGAATTCAGATTGCCCTGA ATCGGAAGCAGTGGGTGCGACTCGAATTCAGATTGCCCTGA < 41bp 0.569681104580667 0.806053950902716 0.14166614 0.8907852 prediction 0.472745692644099 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167855771 chr5:167855772 synonymous SNV . 0 22 hm5C_associated_SNPs_112597 0 0 0 0 2 WWC1 chr5:167855792 5'GT 167855792 Upstream 21bp
chr5 150844159 150844159 1 + C T READ 150844158 + 150844138 150844178 41 AAATGTGCTCACCACTTCTGCCGCAGGTGAGAGCCCTCTGA AAATGTGCTCACCACTTCTGCTGCAGGTGAGAGCCCTCTGA < 41bp 0.545757121707559 0.782129241145888 0.45807496 0.30299735 prediction 0.472744238876657 Functional Gain - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150844158 chr5:150844159 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_112598 0 0 0 0 2 SLC36A1 chr5:150844075 3'AG 150844075 Downstream 85bp
chr5 150844159 150844159 1 + C T READ 150844158 + 150844138 150844178 41 AAATGTGCTCACCACTTCTGCCGCAGGTGAGAGCCCTCTGA AAATGTGCTCACCACTTCTGCTGCAGGTGAGAGCCCTCTGA < 41bp 0.545757121707559 0.782129241145888 0.45807496 0.30299735 prediction 0.472744238876657 Functional Gain - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150844158 chr5:150844159 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_112598 0 0 0 0 2 SLC36A1 chr5:150844163 5'GT 150844163 Upstream 5bp
chrX 18646677 18646677 1 + C G LAML 18646673 + 18646653 18646693 41 AGCAACATCCGGCAGGAACCCGCACCGAAGGGCAGGCCAGC AGCAACATCCGGCAGGAACCCGCAGCGAAGGGCAGGCCAGC < 41bp 0.455381721562981 0.7363628683914 0.4873929 0.7626173 prediction 0.472725736782799 Functional Gain - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18646673 chrX:18646677 nonsynonymous SNV 0.539 2 25 hm5C_associated_SNPs_112604 0 0 0 0 1 CDKL5 chrX:18646707 5'GT 18646707 Upstream 31bp
chr13 96361587 96361587 1 + C A KIRC 96361583 + 96361563 96361603 41 TGCTTTATCTCAGTTTCATGCTGCCGTAGGTTTGTATCATG TGCTTTATCTCAGTTTCATGCTGCAGTAGGTTTGTATCATG < 41bp 0.319512587299654 0.736361217796745 0.05427444 0.16362754 prediction 0.47272243559349 Functional Gain - DNAJC3 ENSG00000102580 CDS Human protein_coding chr13:96361583 chr13:96361587 synonymous SNV . 0 25 hm5C_associated_SNPs_112606 0 0 1 0 1 DNAJC3 chr13:96361591 5'GT 96361591 Upstream 5bp
chr20 55049793 55049793 1 + T G UCEC 55049790 + 55049770 55049810 41 GGACAAATCTGCAGAAAAGGCTCTTGGGAAGGCAGCATCTC GGACAAATCTGCAGAAAAGGCTCGTGGGAAGGCAGCATCTC < 41bp 0.346126437703431 0.736354741603718 0.07697767 0.060549885 prediction 0.472709483207435 Functional Gain - RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55049790 chr20:55049793 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_112607 0 0 1 0 2 RTFDC1 chr20:55049734 3'AG 55049734 Downstream 60bp
chr20 55049793 55049793 1 + T G UCEC 55049790 + 55049770 55049810 41 GGACAAATCTGCAGAAAAGGCTCTTGGGAAGGCAGCATCTC GGACAAATCTGCAGAAAAGGCTCGTGGGAAGGCAGCATCTC < 41bp 0.346126437703431 0.736354741603718 0.07697767 0.060549885 prediction 0.472709483207435 Functional Gain - RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55049790 chr20:55049793 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_112607 0 0 1 0 2 RTFDC1 chr20:55049827 5'GT 55049827 Upstream 35bp
chr14 59797948 59797948 1 + C T CESC 59797947 + 59797927 59797967 41 AGGGCCGTCTGTGCTTCAATCCCAGGTGGACCCTCGCCTGG AGGGCCGTCTGTGCTTCAATCTCAGGTGGACCCTCGCCTGG < 41bp 0.539107297249069 0.775455606019919 0.37887883 0.07272893 prediction 0.4726966175417 Functional Gain - DAAM1 ENSG00000100592 CDS Human protein_coding chr14:59797947 chr14:59797948 nonsynonymous SNV 0.907 2 22 hm5C_associated_SNPs_112609 0 0 0 0 1 DAAM1 chr14:59797927 3'AG 59797927 Downstream 22bp
chr2 219222808 219222808 1 + T C STAD 219222806 + 219222786 219222826 41 ATGGAACAGCACAGCCAAGACTTCATCAAGGTACTTCCCAG ATGGAACAGCACAGCCAAGACTCCATCAAGGTACTTCCCAG < 41bp 0.600037757291261 0.8363840927546 0.07222915 0.9658954 prediction 0.472692670926679 Functional Gain - CATIP ENSG00000158428 CDS Human protein_coding chr2:219222806 chr2:219222808 nonsynonymous SNV 0.978 3 23 hm5C_associated_SNPs_112610 0 0 0 0 2 CATIP chr2:219222760 3'AG 219222760 Downstream 49bp
chr2 219222808 219222808 1 + T C STAD 219222806 + 219222786 219222826 41 ATGGAACAGCACAGCCAAGACTTCATCAAGGTACTTCCCAG ATGGAACAGCACAGCCAAGACTCCATCAAGGTACTTCCCAG < 41bp 0.600037757291261 0.8363840927546 0.07222915 0.9658954 prediction 0.472692670926679 Functional Gain - CATIP ENSG00000158428 CDS Human protein_coding chr2:219222806 chr2:219222808 nonsynonymous SNV 0.978 3 23 hm5C_associated_SNPs_112610 0 0 0 0 2 CATIP chr2:219222815 5'GT 219222815 Upstream 8bp
chr1 203044757 203044757 1 + C T UCEC 203044756 + 203044736 203044776 41 CCTGGAGGAAGCGCTTCCGGCCGCGGGAGCACCACGGTCGC CCTGGAGGAAGCGCTTCCGGCTGCGGGAGCACCACGGTCGC < 41bp 0.533742464543348 0.770083013249426 0.7589921 0.8383081 prediction 0.472681097412156 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203044756 chr1:203044757 nonsynonymous SNV 0.967 2 22 hm5C_associated_SNPs_112613 0 0 0 0 1 PPFIA4 chr1:203044705 3'AG 203044705 Downstream 53bp
chr16 23701189 23701189 1 + C A SKCM 23701188 + 23701168 23701208 41 TCTTCTCTTGCAGGATCACACCAAGCTCATCTTGTGCCCAC TCTTCTCTTGCAGGATCACACAAAGCTCATCTTGTGCCCAC < 41bp 0.559572785250554 0.795912581037757 0.4073999 0.51594853 prediction 0.472679591574406 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23701188 chr16:23701189 synonymous SNV . 0 22 hm5C_associated_SNPs_112614 0 0 1 0 1 PLK1 chr16:23701181 3'AG 23701181 Downstream 9bp
chrX 130219571 130219571 1 + C T UCEC 130219570 + 130219550 130219590 41 TCCTTCTTCTAGCTTTAAAGCCCCAGGATCAGCTTTCTGCC TCCTTCTTCTAGCTTTAAAGCTCCAGGATCAGCTTTCTGCC < 41bp 0.571335554724062 0.807674245039258 0.07637861 0.5170604 prediction 0.472677380630392 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130219570 chrX:130219571 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_112615 0 0 0 0 1 ARHGAP36 chrX:130219562 3'AG 130219562 Downstream 10bp
chr4 52753359 52753359 1 + C G rs191384028 52753358 + 52753338 52753378 41 CTCACTGCAACCTCTGCCTCCCGGGTTGAAGCGATTTCCCC CTCACTGCAACCTCTGCCTCCGGGGTTGAAGCGATTTCCCC < 41bp 0.622971558100666 0.859305012594638 0.203498 0.87835175 prediction 0.472666908987943 Functional Gain - DCUN1D4 ENSG00000109184 CDS Human protein_coding chr4:52753358 chr4:52753359 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_112619 0 0 0 0 1 DCUN1D4 chr4:52753410 5'GT 52753410 Upstream 52bp
chr12 113733830 113733830 1 + C G rs61943642 113733829 + 113733809 113733849 41 ACTCAGCAGCAGTGCAGCCCCCGCCGCCCAGCAGCCCCCAG ACTCAGCAGCAGTGCAGCCCCGGCCGCCCAGCAGCCCCCAG < 41bp 0.430904197701869 0.736325750251768 0.053018034 0.3249604 prediction 0.472651500503536 Functional Gain - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113733829 chr12:113733830 synonymous SNV . 0 22 hm5C_associated_SNPs_112621 0 0 1 0 1 TPCN1 chr12:113733765 3'AG 113733765 Downstream 66bp
chr9 132565599 132565599 1 + C A UCEC 132565598 + 132565578 132565618 41 CGTGGGCCTAGCCATCGGGGCCGCGTCGGCCATCACCGGCT CGTGGGCCTAGCCATCGGGGCAGCGTCGGCCATCACCGGCT < 41bp 0.52711095933659 0.76341204629128 0.13105506 0.40019748 prediction 0.472602173909381 Functional Gain - TOR1B ENSG00000136816 CDS Human protein_coding chr9:132565598 chr9:132565599 synonymous SNV . 0 22 hm5C_associated_SNPs_112626 0 0 1 0 1 TOR1B chr9:132565690 5'GT 132565690 Upstream 92bp
chr3 13663337 13663337 1 + C A UCEC 13663333 + 13663313 13663353 41 CGGCGACAGTTCTGTGTGAACACCCTGGGATCCTTCTACTG CGGCGACAGTTCTGTGTGAACACCATGGGATCCTTCTACTG < 41bp 0.308275103909586 0.736301068409498 0.10734418 0.16676947 prediction 0.472602136818996 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13663333 chr3:13663337 nonsynonymous SNV 0.799 3 25 hm5C_associated_SNPs_112627 0 0 0 0 2 FBLN2 chr3:13663275 3'AG 13663275 Downstream 63bp
chr3 13663337 13663337 1 + C A UCEC 13663333 + 13663313 13663353 41 CGGCGACAGTTCTGTGTGAACACCCTGGGATCCTTCTACTG CGGCGACAGTTCTGTGTGAACACCATGGGATCCTTCTACTG < 41bp 0.308275103909586 0.736301068409498 0.10734418 0.16676947 prediction 0.472602136818996 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13663333 chr3:13663337 nonsynonymous SNV 0.799 3 25 hm5C_associated_SNPs_112627 0 0 0 0 2 FBLN2 chr3:13663415 5'GT 13663415 Upstream 79bp
chr3 108572526 108572526 1 + T C UCEC 108572524 + 108572504 108572544 41 ATCACAGCGTTAAGGGGAAGCGTAGAAAGCCCAGGAAACAG ATCACAGCGTTAAGGGGAAGCGCAGAAAGCCCAGGAAACAG < 41bp 0.535600946125724 0.771901036021304 0.32141215 0.24512723 prediction 0.47260017979116 Functional Gain - TRAT1 ENSG00000163519 CDS Human protein_coding chr3:108572524 chr3:108572526 synonymous SNV . 0 23 hm5C_associated_SNPs_112628 0 0 0 0 1 TRAT1 chr3:108572467 3'AG 108572467 Downstream 60bp
chr5 640669 640669 1 + C G rs138955347 640665 + 640645 640685 41 GCTGAGCAGCAGCAGCAGCACGCCCGGGAGATGAGCGAGGT GCTGAGCAGCAGCAGCAGCACGCCGGGGAGATGAGCGAGGT < 41bp 0.570810621017101 0.807105594983516 0.12068987 0.4933297 prediction 0.47258994793283 Functional Gain - CEP72 ENSG00000112877 CDS Human protein_coding chr5:640665 chr5:640669 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_112631 0 0 1 0 1 CEP72 chr5:640719 5'GT 640719 Upstream 51bp
chr11 65108975 65108975 1 + C T SARC 65108974 + 65108954 65108994 41 AGAAGCGAGGTGCCCCGGATCCCCGAGTTGATGATGACAGC AGAAGCGAGGTGCCCCGGATCTCCGAGTTGATGATGACAGC < 41bp 0.460437378654358 0.736286851465644 0.421109 0.63316846 prediction 0.472573702931288 Functional Gain - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65108974 chr11:65108975 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_112636 0 0 1 0 1 DPF2 chr11:65109033 5'GT 65109033 Upstream 59bp
chr12 123459895 123459895 1 + C A UCEC 123459894 + 123459874 123459914 41 TATGGGCTGCACGTGCGCTTCCGAGGCGAGCAGCAGCTGCG TATGGGCTGCACGTGCGCTTCAGAGGCGAGCAGCAGCTGCG < 41bp 0.497389479674958 0.736275383131753 0.89061904 0.88697803 prediction 0.472550766263506 Functional Gain - OGFOD2 ENSG00000111325 CDS Human protein_coding chr12:123459894 chr12:123459895 synonymous SNV . 0 22 hm5C_associated_SNPs_112641 0 0 0 0 1 OGFOD2 chr12:123459930 5'GT 123459930 Upstream 36bp
chr17 18918478 18918478 1 + C T COAD 18918477 + 18918457 18918497 41 ATCTGGAGGCGGCTGCGTCCCCGCTCCGGCGAGCGGGAGCT ATCTGGAGGCGGCTGCGTCCCTGCTCCGGCGAGCGGGAGCT < 41bp 0.518329331267982 0.754602424455841 0.08548245 0.088127434 prediction 0.47254618637572 Functional Gain - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18918477 chr17:18918478 nonsynonymous SNV 0.416 1 22 hm5C_associated_SNPs_112642 0 0 0 0 1 SLC5A10 chr17:18918512 5'GT 18918512 Upstream 35bp
chr1 109241807 109241807 1 + C A UCEC 109241806 + 109241786 109241826 41 CTCCAAGGAGATCTCTGAGTCCACGGAGGTCCCCAAGAAGG CTCCAAGGAGATCTCTGAGTCAACGGAGGTCCCCAAGAAGG < 41bp 0.488249483785618 0.736272529518559 0.17769498 0.33484387 prediction 0.472545059037118 Functional Gain - PRPF38B ENSG00000134186 CDS Human protein_coding chr1:109241806 chr1:109241807 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_112643 0 0 1 0 1 PRPF38B chr1:109241784 3'AG 109241784 Downstream 24bp
chr1 111825303 111825303 1 + C A LUSC 111825302 + 111825282 111825322 41 TGGACTTTGACTGGGAGTACCCCGGCTCTCGTGTGAGCCCT TGGACTTTGACTGGGAGTACCACGGCTCTCGTGTGAGCCCT < 41bp 0.508422431329744 0.744693465730371 0.35913098 0.3938756 prediction 0.472542068801253 Functional Gain - CHIAP2 ENSG00000203878 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:111825302 chr1:111825303 . . 0 22 hm5C_associated_SNPs_112644 0 0 0 0 1 CHIAP2 chr1:111825358 5'GT 111825358 Upstream 56bp
chr20 55092031 55092031 1 + C A BLCA 55092030 + 55092010 55092050 41 CAGCAGAGTCTGTTTCAAAACCAGATGTCAGTGAAGGTAAG CAGCAGAGTCTGTTTCAAAACAAGATGTCAGTGAAGGTAAG < 41bp 0.481708792782445 0.736264481378633 0.10808879 0.028774709 prediction 0.472528962757266 Functional Gain - RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55092030 chr20:55092031 nonsynonymous SNV 0.051 0 22 hm5C_associated_SNPs_112646 0 0 1 0 2 RTFDC1 chr20:55091991 3'AG 55091991 Downstream 41bp
chr20 55092031 55092031 1 + C A BLCA 55092030 + 55092010 55092050 41 CAGCAGAGTCTGTTTCAAAACCAGATGTCAGTGAAGGTAAG CAGCAGAGTCTGTTTCAAAACAAGATGTCAGTGAAGGTAAG < 41bp 0.481708792782445 0.736264481378633 0.10808879 0.028774709 prediction 0.472528962757266 Functional Gain - RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55092030 chr20:55092031 nonsynonymous SNV 0.051 0 22 hm5C_associated_SNPs_112646 0 0 1 0 2 RTFDC1 chr20:55092045 5'GT 55092045 Upstream 15bp
chr20 36012616 36012616 1 + C T SKCM 36012615 + 36012595 36012635 41 GCGGCGCCGCAGCCTGGAGCCCGCCGAGAACGTGCACGGCG GCGGCGCCGCAGCCTGGAGCCTGCCGAGAACGTGCACGGCG < 41bp 0.502888907181169 0.739144618062881 0.47064507 0.47770396 prediction 0.472511421763424 Functional Gain - SRC ENSG00000197122 CDS Human protein_coding chr20:36012615 chr20:36012616 synonymous SNV . 0 22 hm5C_associated_SNPs_112647 0 0 1 0 1 SRC chr20:36012553 3'AG 36012553 Downstream 64bp
chr21 43531632 43531632 1 + T C rs220129 43531630 + 43531610 43531650 41 GGACAGCTACAGGGAAACTCCATCATGGAGCCACCCTCCTG GGACAGCTACAGGGAAACTCCACCATGGAGCCACCCTCCTG < 41bp 0.548717562762627 0.784967620805321 0.07434815 0.30075923 prediction 0.472500116085388 Functional Gain - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43531630 chr21:43531632 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_112649 0 0 0 0 1 UMODL1 chr21:43531616 3'AG 43531616 Downstream 17bp
chr20 37396158 37396158 1 + C G rs367992039 37396154 + 37396134 37396174 41 GGTTCAGAACGTTTTCCTCACTGGCGGCAACACGATGTATC GGTTCAGAACGTTTTCCTCACTGGGGGCAACACGATGTATC < 41bp 0.591845536321269 0.828089955744904 0.2420766 0.7734828 prediction 0.472488838847271 Functional Gain - ACTR5 ENSG00000101442 CDS Human protein_coding chr20:37396154 chr20:37396158 synonymous SNV . 0 25 hm5C_associated_SNPs_112654 0 0 0 0 2 ACTR5 chr20:37396107 3'AG 37396107 Downstream 52bp
chr20 37396158 37396158 1 + C G rs367992039 37396154 + 37396134 37396174 41 GGTTCAGAACGTTTTCCTCACTGGCGGCAACACGATGTATC GGTTCAGAACGTTTTCCTCACTGGGGGCAACACGATGTATC < 41bp 0.591845536321269 0.828089955744904 0.2420766 0.7734828 prediction 0.472488838847271 Functional Gain - ACTR5 ENSG00000101442 CDS Human protein_coding chr20:37396154 chr20:37396158 synonymous SNV . 0 25 hm5C_associated_SNPs_112654 0 0 0 0 2 ACTR5 chr20:37396239 5'GT 37396239 Upstream 82bp
chr8 22865620 22865620 1 - G T KIRC 22865621 - 22865601 22865641 41 TGTGTCCTCAGCCTTACCTCCCGGGTGGAGCTCTCCACAAA TGTGTCCTCAGCCTTACCTCCAGGGTGGAGCTCTCCACAAA < 41bp 0.546562536205092 0.782804935184154 0.7239723 0.86956346 prediction 0.472484797958124 Functional Gain - RHOBTB2 ENSG00000008853 CDS Human antisense chr8:22865621 chr8:22865620 nonsynonymous SNV 0.995 0 22 hm5C_associated_SNPs_112656 0 0 1 0 1 RHOBTB2 chr8:22865630 3'AG 22865630 Downstream 11bp
chr15 90766867 90766867 1 + C T SKCM 90766866 + 90766846 90766886 41 CCCAGCTGCTGTGCTCACGGCCCGACGATGGCTTCCCCTTC CCCAGCTGCTGTGCTCACGGCTCGACGATGGCTTCCCCTTC < 41bp 0.583631775491473 0.819866213034646 0.06666872 0.19174424 prediction 0.472468875086347 Functional Gain - SEMA4B ENSG00000185033 CDS Human protein_coding chr15:90766866 chr15:90766867 nonsynonymous SNV 0.288 2 22 hm5C_associated_SNPs_112660 0 0 0 0 1 SEMA4B chr15:90766791 3'AG 90766791 Downstream 77bp
chr10 18276482 18276482 1 + C A KIRC 18276481 + 18276461 18276501 41 GGGACAGCGCTGGTCCTTTTCCATAGCTGTGAGGAGAACTA GGGACAGCGCTGGTCCTTTTCAATAGCTGTGAGGAGAACTA < 41bp 0.480933064967851 0.736228364887642 0.41261017 0.20398417 prediction 0.472456729775284 Functional Gain - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18276481 chr10:18276482 nonsynonymous SNV 0.996 0 22 hm5C_associated_SNPs_112662 0 0 0 0 2 SLC39A12 chr10:18276408 3'AG 18276408 Downstream 75bp
chr10 18276482 18276482 1 + C A KIRC 18276481 + 18276461 18276501 41 GGGACAGCGCTGGTCCTTTTCCATAGCTGTGAGGAGAACTA GGGACAGCGCTGGTCCTTTTCAATAGCTGTGAGGAGAACTA < 41bp 0.480933064967851 0.736228364887642 0.41261017 0.20398417 prediction 0.472456729775284 Functional Gain - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18276481 chr10:18276482 nonsynonymous SNV 0.996 0 22 hm5C_associated_SNPs_112662 0 0 0 0 2 SLC39A12 chr10:18276580 5'GT 18276580 Upstream 99bp
chr19 19349097 19349097 1 + C A LUAD 19349096 + 19349076 19349116 41 GACCGCGGCTGGCATAAGTTCCAGGGCCACTGTTACCGCTA GACCGCGGCTGGCATAAGTTCAAGGGCCACTGTTACCGCTA < 41bp 0.573520123043671 0.809745998288202 0.9146521 0.92442584 prediction 0.472451750489062 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19349096 chr19:19349097 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_112663 0 0 0 0 1 NCAN chr19:19349062 3'AG 19349062 Downstream 36bp
chr9 101570311 101570311 1 + A G BLCA 101570308 + 101570288 101570328 41 TTAACATCTACCTCAGCGACCGCATCTCACTGCACCGCCGC TTAACATCTACCTCAGCGACCGCGTCTCACTGCACCGCCGC < 41bp 0.495790091001988 0.736208975383317 0.12103528 0.28384078 prediction 0.472417950766635 Functional Gain - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101570308 chr9:101570311 nonsynonymous SNV 0.478 2 24 hm5C_associated_SNPs_112666 0 0 1 0 1 GALNT12 chr9:101570351 5'GT 101570351 Upstream 41bp
chr20 36030849 36030849 1 + C A rs149269541 36030845 + 36030825 36030865 41 GTTCCGCCTGCAGATCGCCTCAGGCATGGCGTACGTGGAGC GTTCCGCCTGCAGATCGCCTCAGGAATGGCGTACGTGGAGC < 41bp 0.691678780922933 0.927883088139275 0.7037483 0.9015484 prediction 0.472408614432684 Functional Gain - SRC ENSG00000197122 CDS Human protein_coding chr20:36030845 chr20:36030849 synonymous SNV . 0 25 hm5C_associated_SNPs_112668 0 0 1 0 1 SRC chr20:36030838 3'AG 36030838 Downstream 12bp
chr1 222892282 222892282 1 + C A rs73124895 222892281 + 222892261 222892301 41 TATAAGTGACTTGAGGTCATCCAGGGCACGACTCCTTGAAC TATAAGTGACTTGAGGTCATCAAGGGCACGACTCCTTGAAC < 41bp 0.555031342568123 0.791229045990759 0.8474839 0.9093545 prediction 0.472395406845273 Functional Gain - BROX ENSG00000162819 CDS Human protein_coding chr1:222892281 chr1:222892282 synonymous SNV . 0 22 hm5C_associated_SNPs_112671 0 0 1 0 2 BROX chr1:222892267 3'AG 222892267 Downstream 16bp
chr1 222892282 222892282 1 + C A rs73124895 222892281 + 222892261 222892301 41 TATAAGTGACTTGAGGTCATCCAGGGCACGACTCCTTGAAC TATAAGTGACTTGAGGTCATCAAGGGCACGACTCCTTGAAC < 41bp 0.555031342568123 0.791229045990759 0.8474839 0.9093545 prediction 0.472395406845273 Functional Gain - BROX ENSG00000162819 CDS Human protein_coding chr1:222892281 chr1:222892282 synonymous SNV . 0 22 hm5C_associated_SNPs_112671 0 0 1 0 2 BROX chr1:222892373 5'GT 222892373 Upstream 92bp
chr10 134258769 134258769 1 + C A UCEC 134258768 + 134258748 134258788 41 GCTGAAATGTGGAGTTTCCTCCCAGGAGCTGAGAGGTAGCT GCTGAAATGTGGAGTTTCCTCACAGGAGCTGAGAGGTAGCT < 41bp 0.5207063322914 0.756893028810046 0.8036585 0.89695585 prediction 0.472373393037292 Functional Gain - C10orf91 ENSG00000180066 CDS Human lincRNA chr10:134258768 chr10:134258769 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_112675 0 0 0 0 1 C10orf91 chr10:134258782 5'GT 134258782 Upstream 14bp
chr11 61541455 61541455 1 + C A LUAD 61541451 + 61541431 61541471 41 CCCCCCAGGCCCATGCTCACCTACCGCGTGGATGCGGACAA CCCCCCAGGCCCATGCTCACCTACAGCGTGGATGCGGACAA < 41bp 0.306438817970335 0.736186024500983 0.039274752 0.13417518 prediction 0.472372049001966 Functional Gain - MYRF ENSG00000124920 CDS Human protein_coding chr11:61541451 chr11:61541455 nonsynonymous SNV 0.923 2 25 hm5C_associated_SNPs_112676 0 0 1 0 1 MYRF chr11:61541439 3'AG 61541439 Downstream 17bp
chr12 1748941 1748941 1 + C T SKCM 1748940 + 1748920 1748960 41 CCGCGAGGGCGAGCTCTCCACCTGCGGCTGCAGCCGGACGG CCGCGAGGGCGAGCTCTCCACTTGCGGCTGCAGCCGGACGG < 41bp 0.522714894075133 0.758900498025787 0.19354483 0.16604427 prediction 0.472371207901308 Functional Gain - WNT5B ENSG00000111186 CDS Human protein_coding chr12:1748940 chr12:1748941 synonymous SNV . 0 22 hm5C_associated_SNPs_112677 0 0 0 0 1 WNT5B chr12:1748850 3'AG 1748850 Downstream 92bp
chr1 248028163 248028163 1 + C A LUSC 248028159 + 248028139 248028179 41 GAGAGCAAGAGCCGGCTGGTCCAGCAGAGCAAGGCCCTGAA GAGAGCAAGAGCCGGCTGGTCCAGAAGAGCAAGGCCCTGAA < 41bp 0.328818062363615 0.736173117786777 0.3932396 0.4445549 prediction 0.472346235573553 Functional Gain - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248028159 chr1:248028163 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_112680 0 0 1 0 1 TRIM58 chr1:248028237 5'GT 248028237 Upstream 75bp
chr15 45436395 45436395 1 + C T UCEC 45436394 + 45436374 45436414 41 CTGTCCAGCAACCGTGGACGCCGCACTCTGCTGCTCAAGAT CTGTCCAGCAACCGTGGACGCTGCACTCTGCTGCTCAAGAT < 41bp 0.544745058623392 0.78091533536532 0.37062544 0.38586342 prediction 0.472340553483856 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45436394 chr15:45436395 nonsynonymous SNV 0.896 4 22 hm5C_associated_SNPs_112681 0 0 0 0 1 DUOX1 chr15:45436433 5'GT 45436433 Upstream 39bp
chr22 30762187 30762187 1 + C T rs113058207 30762186 + 30762166 30762206 41 TGACCATGTTCCGGGTGACCCCGAGTTCACGCAGCTGTCCC TGACCATGTTCCGGGTGACCCTGAGTTCACGCAGCTGTCCC < 41bp 0.498542274108194 0.736166785866137 0.27977017 0.15190285 prediction 0.472333571732274 Functional Gain - CCDC157 ENSG00000187860 CDS Human protein_coding chr22:30762186 chr22:30762187 synonymous SNV . 0 22 hm5C_associated_SNPs_112682 0 0 0 0 1 CCDC157 chr22:30762237 5'GT 30762237 Upstream 51bp
chr9 139815643 139815643 1 + C T CESC 139815642 + 139815622 139815662 41 CGCCAGGAAGCTGTGGCTGGCCGCATACCCGCCATCTTCTC CGCCAGGAAGCTGTGGCTGGCTGCATACCCGCCATCTTCTC < 41bp 0.565052828892574 0.801206813871103 0.33192044 0.73603857 prediction 0.472307969957058 Functional Gain - TRAF2 ENSG00000127191 CDS Human protein_coding chr9:139815642 chr9:139815643 nonsynonymous SNV 0.463 4 22 hm5C_associated_SNPs_112685 0 0 1 0 1 TRAF2 chr9:139815667 5'GT 139815667 Upstream 25bp
chr15 58838038 58838038 1 + C A rs6084 58838037 + 58838017 58838057 41 GGATGCCATTCATACCTTTACCCGGGAGCACATGGGCCTGA GGATGCCATTCATACCTTTACACGGGAGCACATGGGCCTGA < 41bp 0.571003040957676 0.807148057104619 0.1969814 0.17525965 prediction 0.472290032293886 Functional Gain - LIPC ENSG00000166035 CDS Human protein_coding chr15:58838037 chr15:58838038 synonymous SNV . 0 22 hm5C_associated_SNPs_112690 0 0 1 0 1 LIPC chr15:58837941 3'AG 58837941 Downstream 98bp
chr16 15123857 15123857 1 + T C rs149809548 15123855 + 15123835 15123875 41 CCTGCAAGCGGCCTCACAGTCATGGATCTGGAAGCTGAGGG CCTGCAAGCGGCCTCACAGTCACGGATCTGGAAGCTGAGGG < 41bp 0.586625779002278 0.822769247299774 0.6691832 0.27181715 prediction 0.472286936594992 Functional Gain - PDXDC1 ENSG00000179889 CDS Human protein_coding chr16:15123855 chr16:15123857 nonsynonymous SNV 0.966 1 23 hm5C_associated_SNPs_112691 0 0 1 0 2 PDXDC1 chr16:15123808 3'AG 15123808 Downstream 50bp
chr16 15123857 15123857 1 + T C rs149809548 15123855 + 15123835 15123875 41 CCTGCAAGCGGCCTCACAGTCATGGATCTGGAAGCTGAGGG CCTGCAAGCGGCCTCACAGTCACGGATCTGGAAGCTGAGGG < 41bp 0.586625779002278 0.822769247299774 0.6691832 0.27181715 prediction 0.472286936594992 Functional Gain - PDXDC1 ENSG00000179889 CDS Human protein_coding chr16:15123855 chr16:15123857 nonsynonymous SNV 0.966 1 23 hm5C_associated_SNPs_112691 0 0 1 0 2 PDXDC1 chr16:15123913 5'GT 15123913 Upstream 57bp
chr15 89850730 89850730 1 + C A COAD 89850729 + 89850709 89850749 41 TCTCCAGGTGTGTCAGAGCTCCGGAGGAATTCCAAAAAATA TCTCCAGGTGTGTCAGAGCTCAGGAGGAATTCCAAAAAATA < 41bp 0.48700650770285 0.736129777476034 0.88665456 0.9021013 prediction 0.472259554952069 Functional Gain - FANCI ENSG00000140525 CDS Human protein_coding chr15:89850729 chr15:89850730 synonymous SNV . 0 22 hm5C_associated_SNPs_112694 0 0 1 0 2 FANCI chr15:89850707 3'AG 89850707 Downstream 24bp
chr15 89850730 89850730 1 + C A COAD 89850729 + 89850709 89850749 41 TCTCCAGGTGTGTCAGAGCTCCGGAGGAATTCCAAAAAATA TCTCCAGGTGTGTCAGAGCTCAGGAGGAATTCCAAAAAATA < 41bp 0.48700650770285 0.736129777476034 0.88665456 0.9021013 prediction 0.472259554952069 Functional Gain - FANCI ENSG00000140525 CDS Human protein_coding chr15:89850729 chr15:89850730 synonymous SNV . 0 22 hm5C_associated_SNPs_112694 0 0 1 0 2 FANCI chr15:89850760 5'GT 89850760 Upstream 31bp
chr9 71555572 71555572 1 + C T SKCM 71555571 + 71555551 71555591 41 TTCGTTCCTAGCCCTGGGATCCCGACACAGGCCAGACCTGG TTCGTTCCTAGCCCTGGGATCTCGACACAGGCCAGACCTGG < 41bp 0.487375729997408 0.736125094012389 0.061017662 0.27344203 prediction 0.472250188024778 Functional Gain - PIP5K1B ENSG00000107242 CDS Human protein_coding chr9:71555571 chr9:71555572 synonymous SNV . 0 22 hm5C_associated_SNPs_112696 0 0 0 0 1 PIP5K1B chr9:71555562 3'AG 71555562 Downstream 11bp
chr11 129722527 129722527 1 + C T rs139011868 129722526 + 129722506 129722546 41 GCGTCTCGAGATCGTCGAAGCCGCAATTAGGACTTTGTTTT GCGTCTCGAGATCGTCGAAGCTGCAATTAGGACTTTGTTTT < 41bp 0.531992667864593 0.768117734102292 0.21376649 0.0939537 prediction 0.472250132475399 Functional Gain - TMEM45B ENSG00000151715 CDS Human protein_coding chr11:129722526 chr11:129722527 synonymous SNV . 0 22 hm5C_associated_SNPs_112697 0 0 1 0 1 TMEM45B chr11:129722555 5'GT 129722555 Upstream 29bp
chr19 44103077 44103077 1 + C G BRCA 44103073 + 44103053 44103093 41 CATGAAGCGGGAGCACCCAGCGGACTTCGTGGCCCAGAAGC CATGAAGCGGGAGCACCCAGCGGAGTTCGTGGCCCAGAAGC < 41bp 0.439357162097696 0.736122572417521 0.8819649 0.9162792 prediction 0.472245144835042 Functional Gain - ZNF576 ENSG00000124444 CDS Human protein_coding chr19:44103073 chr19:44103077 nonsynonymous SNV 0.963 1 25 hm5C_associated_SNPs_112698 0 0 1 0 1 ZNF576 chr19:44102983 3'AG 44102983 Downstream 95bp
chr6 158504489 158504489 1 + C T rs138094772 158504488 + 158504468 158504508 41 GCAGAGCAGTGAAGATTAGACCGAAGACCAAGGACTGGCTG GCAGAGCAGTGAAGATTAGACTGAAGACCAAGGACTGGCTG < 41bp 0.53547548772974 0.771588163883954 0.19183671 0.12521994 prediction 0.472225352308428 Functional Gain - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158504488 chr6:158504489 nonsynonymous SNV 0.171 3 22 hm5C_associated_SNPs_112699 0 0 1 0 1 SYNJ2 chr6:158504461 3'AG 158504461 Downstream 29bp
chr4 71895099 71895099 1 + T C UCEC 71895097 + 71895077 71895117 41 GTTTTTGAGTACTTTGTGATCTTGCTGAAGACTACAGGCAG GTTTTTGAGTACTTTGTGATCTCGCTGAAGACTACAGGCAG < 41bp 0.476326601851982 0.736111218530712 0.18674201 0.16491133 prediction 0.472222437061425 Functional Gain - DCK ENSG00000156136 CDS Human protein_coding chr4:71895097 chr4:71895099 nonsynonymous SNV 0.128 2 23 hm5C_associated_SNPs_112700 0 0 1 0 1 DCK chr4:71895069 3'AG 71895069 Downstream 31bp
chr17 7577130 7577130 1 - A T BRCA 7577134 - 7577114 7577154 41 GGTAATCTACTGGGACGGAACAGCTTTGAGGTGCGTGTTTG GGTAATCTACTGGGACGGAACAGCATTGAGGTGCGTGTTTG < 41bp 0.607100435334681 0.843211307617165 0.18253559 0.16391274 prediction 0.472221744564967 Functional Gain - TP53 ENSG00000141510 CDS Human protein_coding chr17:7577134 chr17:7577130 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_112701 9 0 1 0 1 TP53 chr17:7577155 3'AG 7577155 Downstream 26bp
chr16 28509438 28509438 1 + C T SKCM 28509437 + 28509417 28509457 41 TCCCTCCTAGACGTCTCTGTCCCAAGGAGTCGCGTGCACCT TCCCTCCTAGACGTCTCTGTCTCAAGGAGTCGCGTGCACCT < 41bp 0.555151254508115 0.791258617135914 0.21522757 0.16893467 prediction 0.472214725255598 Functional Gain - APOBR ENSG00000184730 CDS Human protein_coding chr16:28509437 chr16:28509438 nonsynonymous SNV 0.821 1 22 hm5C_associated_SNPs_112702 0 0 0 0 1 APOBR chr16:28509402 3'AG 28509402 Downstream 37bp
chr10 89717691 89717691 1 + T G GBM 89717689 + 89717669 89717709 41 ACACGACGGGAAGACAAGTTCATGTACTTTGAGTTCCCTCA ACACGACGGGAAGACAAGTTCAGGTACTTTGAGTTCCCTCA < 41bp 0.390012488415355 0.736106545775737 0.12745366 0.63060904 prediction 0.472213091551473 Functional Gain - PTEN ENSG00000171862 CDS Human protein_coding chr10:89717689 chr10:89717691 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_112703 0 0 1 0 2 PTEN chr10:89717610 3'AG 89717610 Downstream 82bp
chr10 89717691 89717691 1 + T G GBM 89717689 + 89717669 89717709 41 ACACGACGGGAAGACAAGTTCATGTACTTTGAGTTCCCTCA ACACGACGGGAAGACAAGTTCAGGTACTTTGAGTTCCCTCA < 41bp 0.390012488415355 0.736106545775737 0.12745366 0.63060904 prediction 0.472213091551473 Functional Gain - PTEN ENSG00000171862 CDS Human protein_coding chr10:89717689 chr10:89717691 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_112703 0 0 1 0 2 PTEN chr10:89717776 5'GT 89717776 Upstream 86bp
chr2 183621060 183621060 1 + T G SKCM 183621057 + 183621037 183621077 41 TCAGGATCTTATGAATCCTTCAGTGGTCTCCCTTACACCCA TCAGGATCTTATGAATCCTTCAGGGGTCTCCCTTACACCCA < 41bp 0.35384859518812 0.736096954455271 0.598381 0.93993485 prediction 0.472193908910543 Functional Gain - DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183621057 chr2:183621060 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_112705 0 0 1 0 1 DNAJC10 chr2:183621041 3'AG 183621041 Downstream 20bp
chr12 133291604 133291604 1 + C T ESCA 133291603 + 133291583 133291623 41 GATGGCTCCCTGGAGAAGGACCGCACTCTGACCCCGCTGGG GATGGCTCCCTGGAGAAGGACTGCACTCTGACCCCGCTGGG < 41bp 0.550743109210113 0.786824925025671 0.048166573 0.21159413 prediction 0.472163631631116 Functional Gain - PGAM5 ENSG00000176894;ENSG00000247077 CDS Human other chr12:133291603 chr12:133291604 nonsynonymous SNV 0.992 0 22 hm5C_associated_SNPs_112708 0 0 1 0 1 PGAM5 chr12:133291622 5'GT 133291622 Upstream 19bp
chr10 135051581 135051581 1 + C A LUAD 135051577 + 135051557 135051597 41 GGCCCAGGCCAGACATCCGGCGCCCGGGAGCCCCCTCAGGC GGCCCAGGCCAGACATCCGGCGCCAGGGAGCCCCCTCAGGC < 41bp 0.687487646101317 0.923563014345142 0.19337738 0.3763898 prediction 0.47215073648765 Functional Gain - VENTX ENSG00000151650 CDS Human protein_coding chr10:135051577 chr10:135051581 synonymous SNV . 0 25 hm5C_associated_SNPs_112711 0 0 0 0 1 VENTX chr10:135051659 5'GT 135051659 Upstream 79bp
chr11 6261913 6261913 1 + C T UCEC 6261912 + 6261892 6261932 41 ATGAAGCTGCAGCACGTCAACCGCAAGCTGGAGCGGCGAGT ATGAAGCTGCAGCACGTCAACTGCAAGCTGGAGCGGCGAGT < 41bp 0.5515350300254 0.787608459678101 0.131073 0.13337505 prediction 0.472146859305403 Functional Gain - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6261912 chr11:6261913 nonsynonymous SNV 0.674 3 22 hm5C_associated_SNPs_112713 0 0 0 0 2 CNGA4 chr11:6261869 3'AG 6261869 Downstream 45bp
chr11 6261913 6261913 1 + C T UCEC 6261912 + 6261892 6261932 41 ATGAAGCTGCAGCACGTCAACCGCAAGCTGGAGCGGCGAGT ATGAAGCTGCAGCACGTCAACTGCAAGCTGGAGCGGCGAGT < 41bp 0.5515350300254 0.787608459678101 0.131073 0.13337505 prediction 0.472146859305403 Functional Gain - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6261912 chr11:6261913 nonsynonymous SNV 0.674 3 22 hm5C_associated_SNPs_112713 0 0 0 0 2 CNGA4 chr11:6261941 5'GT 6261941 Upstream 29bp
chr16 5061218 5061218 1 + C A rs148186772 5061217 + 5061197 5061237 41 CCTGACGGCTCTGCACAGCCCCGGGCCCAAGTGCAAACTTC CCTGACGGCTCTGCACAGCCCAGGGCCCAAGTGCAAACTTC < 41bp 0.471227412682873 0.736071556126516 0.3706885 0.73293865 prediction 0.472143112253032 Functional Gain - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5061217 chr16:5061218 synonymous SNV . 0 22 hm5C_associated_SNPs_112715 0 0 0 0 1 SEC14L5 chr16:5061274 5'GT 5061274 Upstream 57bp
chr5 170863172 170863172 1 + C T STAD 170863171 + 170863151 170863191 41 CGGGCTCGGGACGATGTGAGCCGTAAGCAGCTGCGGCTGTA CGGGCTCGGGACGATGTGAGCTGTAAGCAGCTGCGGCTGTA < 41bp 0.506445406197868 0.742514264178354 0.7662184 0.4696161 prediction 0.472137715960973 Functional Gain - FGF18 ENSG00000156427 CDS Human protein_coding chr5:170863171 chr5:170863172 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_112719 0 0 1 0 1 FGF18 chr5:170863097 3'AG 170863097 Downstream 76bp
chr13 48832368 48832368 1 + T C LIHC 48832366 + 48832346 48832386 41 CTACTGGAGTTACTTATTAACATCAAGGTATAAGAATGTTG CTACTGGAGTTACTTATTAACACCAAGGTATAAGAATGTTG < 41bp 0.454674720973587 0.736067736490357 0.04850778 0.043183357 prediction 0.472135472980713 Functional Gain - ITM2B ENSG00000136156 CDS Human protein_coding chr13:48832366 chr13:48832368 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_112720 0 0 1 0 1 ITM2B chr13:48832372 5'GT 48832372 Upstream 5bp
chr10 104486489 104486489 1 + C A rs35153373 104486485 + 104486465 104486505 41 GAAGCACTTCCTAAACATCACGGACCCCCGCACTGTCTTTG GAAGCACTTCCTAAACATCACGGAACCCCGCACTGTCTTTG < 41bp 0.319146016009606 0.73606313408146 0.0660961 0.27058944 prediction 0.472126268162919 Functional Gain - SFXN2 ENSG00000156398 CDS Human protein_coding chr10:104486485 chr10:104486489 nonsynonymous SNV 0.847 4 25 hm5C_associated_SNPs_112721 0 0 1 0 1 SFXN2 chr10:104486554 5'GT 104486554 Upstream 66bp
chr6 345903 345903 1 + C T UCEC 345902 + 345882 345922 41 TTCATTCACGAGTGCCGGCTCCGCGGTGAGAGCTGCCTTGT TTCATTCACGAGTGCCGGCTCTGCGGTGAGAGCTGCCTTGT < 41bp 0.484455320837136 0.736059236786617 0.2604453 0.15701485 prediction 0.472118473573233 Functional Gain - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:345902 chr6:345903 nonsynonymous SNV 0.458 2 22 hm5C_associated_SNPs_112722 0 0 1 0 2 DUSP22 chr6:345854 3'AG 345854 Downstream 50bp
chr6 345903 345903 1 + C T UCEC 345902 + 345882 345922 41 TTCATTCACGAGTGCCGGCTCCGCGGTGAGAGCTGCCTTGT TTCATTCACGAGTGCCGGCTCTGCGGTGAGAGCTGCCTTGT < 41bp 0.484455320837136 0.736059236786617 0.2604453 0.15701485 prediction 0.472118473573233 Functional Gain - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:345902 chr6:345903 nonsynonymous SNV 0.458 2 22 hm5C_associated_SNPs_112722 0 0 1 0 2 DUSP22 chr6:345928 5'GT 345928 Upstream 26bp
chr1 197890459 197890459 1 + C T UCEC 197890458 + 197890438 197890478 41 TTCTCTGTGCAGAGATGTGCCCGCTGCCACCTTGGCATTTC TTCTCTGTGCAGAGATGTGCCTGCTGCCACCTTGGCATTTC < 41bp 0.518064871415796 0.754120678251321 0.02160576 0.05817157 prediction 0.472111613671051 Functional Gain - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197890458 chr1:197890459 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112724 0 0 0 0 1 LHX9 chr1:197890434 3'AG 197890434 Downstream 26bp
chr11 61505223 61505223 1 + C T SKCM 61505222 + 61505202 61505242 41 GTTCTGGGCAAAGACCTCGTCCCCAGGTGAGTCCTTGGCCC GTTCTGGGCAAAGACCTCGTCTCCAGGTGAGTCCTTGGCCC < 41bp 0.568333369488571 0.804388843806349 0.2566597 0.9554477 prediction 0.472110948635558 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61505222 chr11:61505223 nonsynonymous SNV 0.938 3 22 hm5C_associated_SNPs_112725 0 0 0 0 2 DAGLA chr11:61505159 3'AG 61505159 Downstream 65bp
chr11 61505223 61505223 1 + C T SKCM 61505222 + 61505202 61505242 41 GTTCTGGGCAAAGACCTCGTCCCCAGGTGAGTCCTTGGCCC GTTCTGGGCAAAGACCTCGTCTCCAGGTGAGTCCTTGGCCC < 41bp 0.568333369488571 0.804388843806349 0.2566597 0.9554477 prediction 0.472110948635558 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61505222 chr11:61505223 nonsynonymous SNV 0.938 3 22 hm5C_associated_SNPs_112725 0 0 0 0 2 DAGLA chr11:61505227 5'GT 61505227 Upstream 5bp
chr9 21854770 21854770 1 + C A COAD 21854769 + 21854749 21854789 41 GGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTC GGCGGATGTTATCAACATGACAACAGTTCCAGAGGTGGTTC < 41bp 0.502822741347258 0.738875654019471 0.03824976 0.04273498 prediction 0.472105825344427 Functional Gain - MTAP ENSG00000099810 CDS Human protein_coding chr9:21854769 chr9:21854770 synonymous SNV . 0 22 hm5C_associated_SNPs_112726 0 0 0 1 1 MTAP chr9:21854869 5'GT 21854869 Upstream 100bp
chr1 17690059 17690059 1 + C A LIHC 17690055 + 17690035 17690075 41 GGGAAGCACCTGGGCATCCCCAAGCCCTTCGGGCCCGTCAT GGGAAGCACCTGGGCATCCCCAAGACCTTCGGGCCCGTCAT < 41bp 0.687064233012764 0.923115355692543 0.8106514 0.76625776 prediction 0.472102245359558 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17690055 chr1:17690059 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_112727 0 0 0 0 1 PADI4 chr1:17690017 3'AG 17690017 Downstream 43bp
chr1 177225132 177225132 1 + C T LUSC 177225131 + 177225111 177225151 41 GTTTGCCATTGCCTCTTGCCCCAGAGTTTATCCGGAACATT GTTTGCCATTGCCTCTTGCCCTAGAGTTTATCCGGAACATT < 41bp 0.551908057116763 0.787950327016381 0.17248431 0.037260056 prediction 0.472084539799237 Functional Gain - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177225131 chr1:177225132 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_112730 0 0 0 0 1 BRINP2 chr1:177225055 3'AG 177225055 Downstream 78bp
chr16 10851831 10851831 1 + C T SKCM 10851830 + 10851810 10851850 41 GATGAACACCTCTCGGTCGTCCGGTACCTGGCCACAGCACA GATGAACACCTCTCGGTCGTCTGGTACCTGGCCACAGCACA < 41bp 0.49022496718724 0.736039442475642 0.59872097 0.54403794 prediction 0.472078884951284 Functional Gain - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10851830 chr16:10851831 nonsynonymous SNV 0.698 2 22 hm5C_associated_SNPs_112732 0 0 1 0 1 NUBP1 chr16:10851884 5'GT 10851884 Upstream 54bp
chr6 397186 397186 1 + C T SKCM 397185 + 397165 397205 41 GATCAGCCACACCCGGAAATCCCGTACCAATGTCCCATGAC GATCAGCCACACCCGGAAATCTCGTACCAATGTCCCATGAC < 41bp 0.539221918795605 0.775260872863051 0.16720128 0.24450618 prediction 0.472077908134893 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:397185 chr6:397186 nonsynonymous SNV 0.874 2 22 hm5C_associated_SNPs_112733 0 0 0 0 3 IRF4 chr6:397108 3'AG 397108 Downstream 79bp
chr6 397186 397186 1 + C T SKCM 397185 + 397165 397205 41 GATCAGCCACACCCGGAAATCCCGTACCAATGTCCCATGAC GATCAGCCACACCCGGAAATCTCGTACCAATGTCCCATGAC < 41bp 0.539221918795605 0.775260872863051 0.16720128 0.24450618 prediction 0.472077908134893 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:397185 chr6:397186 nonsynonymous SNV 0.874 2 22 hm5C_associated_SNPs_112733 0 0 0 0 3 IRF4 chr6:397111 3'AG 397111 Downstream 76bp
chr6 397186 397186 1 + C T SKCM 397185 + 397165 397205 41 GATCAGCCACACCCGGAAATCCCGTACCAATGTCCCATGAC GATCAGCCACACCCGGAAATCTCGTACCAATGTCCCATGAC < 41bp 0.539221918795605 0.775260872863051 0.16720128 0.24450618 prediction 0.472077908134893 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:397185 chr6:397186 nonsynonymous SNV 0.874 2 22 hm5C_associated_SNPs_112733 0 0 0 0 3 IRF4 chr6:397252 5'GT 397252 Upstream 67bp
chr19 53989943 53989943 1 + C A UCEC 53989942 + 53989922 53989962 41 TCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGAC TCTCAGGAGGAGTGGAAATGCATGGACCCTGCTCAGAGGAC < 41bp 0.547003285628204 0.78303522566621 0.0856466 0.13523835 prediction 0.472063880076011 Functional Gain - ZNF813 ENSG00000198346 CDS Human protein_coding chr19:53989942 chr19:53989943 nonsynonymous SNV 0.074 3 22 hm5C_associated_SNPs_112735 0 0 0 0 1 ZNF813 chr19:53990012 5'GT 53990012 Upstream 70bp
chr1 26603636 26603636 1 + C A SARC 26603635 + 26603615 26603655 41 TCTCCCCAGCAGCACAGCACCCAGAGACTCAGCTAGATTTG TCTCCCCAGCAGCACAGCACCAAGAGACTCAGCTAGATTTG < 41bp 0.549191527669364 0.785214315454492 0.22837004 0.49407768 prediction 0.472045575570256 Functional Gain - CEP85 ENSG00000130695 CDS Human protein_coding chr1:26603635 chr1:26603636 nonsynonymous SNV 0.963 2 22 hm5C_associated_SNPs_112737 0 0 1 0 2 CEP85 chr1:26603624 3'AG 26603624 Downstream 13bp
chr1 26603636 26603636 1 + C A SARC 26603635 + 26603615 26603655 41 TCTCCCCAGCAGCACAGCACCCAGAGACTCAGCTAGATTTG TCTCCCCAGCAGCACAGCACCAAGAGACTCAGCTAGATTTG < 41bp 0.549191527669364 0.785214315454492 0.22837004 0.49407768 prediction 0.472045575570256 Functional Gain - CEP85 ENSG00000130695 CDS Human protein_coding chr1:26603635 chr1:26603636 nonsynonymous SNV 0.963 2 22 hm5C_associated_SNPs_112737 0 0 1 0 2 CEP85 chr1:26603627 3'AG 26603627 Downstream 10bp
chr3 20161213 20161213 1 + C A COAD 20161212 + 20161192 20161232 41 CTTCTGGACTTGAGGCAAACCCAGGTAAGCTCTTAAGAGGG CTTCTGGACTTGAGGCAAACCAAGGTAAGCTCTTAAGAGGG < 41bp 0.574756288913604 0.810777953007712 0.53995353 0.6311595 prediction 0.472043328188215 Functional Gain - KAT2B ENSG00000114166 CDS Human protein_coding chr3:20161212 chr3:20161213 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_112738 0 0 0 0 1 KAT2B chr3:20161215 5'GT 20161215 Upstream 3bp
chr1 153004854 153004854 1 + C G GBM 153004853 + 153004833 153004873 41 GCAGCAGAAGCAGCCTTGCACCCCACCCCCTCAGCTTCAGC GCAGCAGAAGCAGCCTTGCACGCCACCCCCTCAGCTTCAGC < 41bp 0.633713556260384 0.869734474258361 0.14991337 0.18182394 prediction 0.472041835995954 Functional Gain - SPRR1B ENSG00000169469 CDS Human protein_coding chr1:153004853 chr1:153004854 synonymous SNV . 0 22 hm5C_associated_SNPs_112739 0 0 0 0 1 SPRR1B chr1:153004803 3'AG 153004803 Downstream 52bp
chr19 5131539 5131539 1 + C G rs201365136 5131538 + 5131518 5131558 41 GGTCGCATGGAGACCAAAGCCCGGGCCGGAGAGGGGCAGGT GGTCGCATGGAGACCAAAGCCGGGGCCGGAGAGGGGCAGGT < 41bp 0.620719327438891 0.856737417821296 0.447806 0.8901935 prediction 0.472036180764809 Functional Gain - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5131538 chr19:5131539 nonsynonymous SNV 0.011 0 22 hm5C_associated_SNPs_112740 0 0 1 0 1 KDM4B chr19:5131556 5'GT 5131556 Upstream 18bp
chr4 88902856 88902856 1 + T A COAD 88902852 + 88902832 88902872 41 CAGCAACCGAAGTTTTCACTCCAGTTGTCCCCACAGTAGAC CAGCAACCGAAGTTTTCACTCCAGATGTCCCCACAGTAGAC < 41bp 0.416568086871733 0.736017779996175 0.32896638 0.61364025 prediction 0.472035559992351 Functional Gain - SPP1 ENSG00000118785 CDS Human protein_coding chr4:88902852 chr4:88902856 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_112741 0 0 1 0 1 SPP1 chr4:88902950 5'GT 88902950 Upstream 95bp
chr6 39846031 39846031 1 + C T STAD 39846030 + 39846010 39846050 41 CGAGACCAGGCAGAGAAGTTCCGGAAAGGTGAGGGGCTCTG CGAGACCAGGCAGAGAAGTTCTGGAAAGGTGAGGGGCTCTG < 41bp 0.485939863096597 0.73601079990143 0.834926 0.7388019 prediction 0.47202159980286 Functional Gain - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39846030 chr6:39846031 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_112743 0 0 0 0 2 DAAM2 chr6:39845979 3'AG 39845979 Downstream 53bp
chr6 39846031 39846031 1 + C T STAD 39846030 + 39846010 39846050 41 CGAGACCAGGCAGAGAAGTTCCGGAAAGGTGAGGGGCTCTG CGAGACCAGGCAGAGAAGTTCTGGAAAGGTGAGGGGCTCTG < 41bp 0.485939863096597 0.73601079990143 0.834926 0.7388019 prediction 0.47202159980286 Functional Gain - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39846030 chr6:39846031 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_112743 0 0 0 0 2 DAAM2 chr6:39846037 5'GT 39846037 Upstream 7bp
chr2 75874015 75874015 1 + C A rs11552948 75874014 + 75873994 75874034 41 GCCGCCAGGACTCTGCTCCCCCCGCCGGCCTCTATCGCCTG GCCGCCAGGACTCTGCTCCCCACGCCGGCCTCTATCGCCTG < 41bp 0.50519711306644 0.741203797923789 0.019164294 0.07452378 prediction 0.472013369714699 Functional Gain - MRPL19 ENSG00000115364 CDS Human protein_coding chr2:75874014 chr2:75874015 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_112748 0 0 1 0 1 MRPL19 chr2:75874036 5'GT 75874036 Upstream 22bp
chr15 67813876 67813876 1 - G T UCEC 67813880 - 67813860 67813900 41 CGGTTCTGCCGGGCCAGGTCCTGCCAGGGAGCCTTGGAGCA CGGTTCTGCCGGGCCAGGTCCTGCAAGGGAGCCTTGGAGCA < 41bp 0.329405640906561 0.735998082491743 0.38108867 0.7927594 prediction 0.471996164983485 Functional Gain - C15orf61 ENSG00000189227 CDS Human protein_coding chr15:67813880 chr15:67813876 nonsynonymous SNV 0.948 0 25 hm5C_associated_SNPs_112753 0 0 1 0 2 C15orf61 chr15:67813832 5'GT 67813832 Upstream 45bp
chr15 67813876 67813876 1 - G T UCEC 67813880 - 67813860 67813900 41 CGGTTCTGCCGGGCCAGGTCCTGCCAGGGAGCCTTGGAGCA CGGTTCTGCCGGGCCAGGTCCTGCAAGGGAGCCTTGGAGCA < 41bp 0.329405640906561 0.735998082491743 0.38108867 0.7927594 prediction 0.471996164983485 Functional Gain - C15orf61 ENSG00000189227 CDS Human protein_coding chr15:67813880 chr15:67813876 nonsynonymous SNV 0.948 0 25 hm5C_associated_SNPs_112753 0 0 1 0 2 C15orf61 chr15:67813857 5'GT 67813857 Upstream 20bp
chr18 8819054 8819054 1 + C T LUAD 8819053 + 8819033 8819073 41 TTTCCCCACCAGGGAAGCCTCCGCATGCCCCGTCCAGTGGC TTTCCCCACCAGGGAAGCCTCTGCATGCCCCGTCCAGTGGC < 41bp 0.57918324630146 0.815178775780387 0.27841356 0.8111678 prediction 0.471991058957855 Functional Gain - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8819053 chr18:8819054 nonsynonymous SNV 0.002 2 22 hm5C_associated_SNPs_112754 0 0 0 0 2 MTCL1 chr18:8818961 3'AG 8818961 Downstream 94bp
chr18 8819054 8819054 1 + C T LUAD 8819053 + 8819033 8819073 41 TTTCCCCACCAGGGAAGCCTCCGCATGCCCCGTCCAGTGGC TTTCCCCACCAGGGAAGCCTCTGCATGCCCCGTCCAGTGGC < 41bp 0.57918324630146 0.815178775780387 0.27841356 0.8111678 prediction 0.471991058957855 Functional Gain - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8819053 chr18:8819054 nonsynonymous SNV 0.002 2 22 hm5C_associated_SNPs_112754 0 0 0 0 2 MTCL1 chr18:8819045 3'AG 8819045 Downstream 10bp
chr22 18069942 18069942 1 + C T SKCM 18069941 + 18069921 18069961 41 GGCCTCAGCACCCTCCACCTCCAGGTCCTACACAACTGGTT GGCCTCAGCACCCTCCACCTCTAGGTCCTACACAACTGGTT < 41bp 0.509443140532542 0.74542577698667 0.95180595 0.9364444 prediction 0.471965272908257 Functional Gain - SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18069941 chr22:18069942 synonymous SNV . 0 22 hm5C_associated_SNPs_112756 0 0 0 0 1 SLC25A18 chr22:18069902 3'AG 18069902 Downstream 41bp
chr19 41826329 41826329 1 + A G LGG 41826326 + 41826306 41826346 41 TGCGAGAGGAGTTCACCAGCCGCATGCACCAGCGCTTCCTA TGCGAGAGGAGTTCACCAGCCGCGTGCACCAGCGCTTCCTA < 41bp 0.50742548178106 0.743394921452665 0.21890616 0.3567463 prediction 0.47193887934321 Functional Gain - CCDC97 ENSG00000142039 CDS Human protein_coding chr19:41826326 chr19:41826329 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_112762 0 0 1 0 2 CCDC97 chr19:41826246 3'AG 41826246 Downstream 84bp
chr19 41826329 41826329 1 + A G LGG 41826326 + 41826306 41826346 41 TGCGAGAGGAGTTCACCAGCCGCATGCACCAGCGCTTCCTA TGCGAGAGGAGTTCACCAGCCGCGTGCACCAGCGCTTCCTA < 41bp 0.50742548178106 0.743394921452665 0.21890616 0.3567463 prediction 0.47193887934321 Functional Gain - CCDC97 ENSG00000142039 CDS Human protein_coding chr19:41826326 chr19:41826329 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_112762 0 0 1 0 2 CCDC97 chr19:41826375 5'GT 41826375 Upstream 47bp
chr6 41204266 41204266 1 + A G LUSC 41204263 + 41204243 41204283 41 TGCCTTGGCTCAGGTGGCCCCAGATTCCTGGTCTTGGTGCT TGCCTTGGCTCAGGTGGCCCCAGGTTCCTGGTCTTGGTGCT < 41bp 0.529347830782568 0.765315318789032 0.8615329 0.92995906 prediction 0.471934976012929 Functional Gain - TREML4 ENSG00000188056 CDS Human protein_coding chr6:41204263 chr6:41204266 synonymous SNV . 0 24 hm5C_associated_SNPs_112763 0 0 0 0 2 TREML4 chr6:41204224 3'AG 41204224 Downstream 43bp
chr6 41204266 41204266 1 + A G LUSC 41204263 + 41204243 41204283 41 TGCCTTGGCTCAGGTGGCCCCAGATTCCTGGTCTTGGTGCT TGCCTTGGCTCAGGTGGCCCCAGGTTCCTGGTCTTGGTGCT < 41bp 0.529347830782568 0.765315318789032 0.8615329 0.92995906 prediction 0.471934976012929 Functional Gain - TREML4 ENSG00000188056 CDS Human protein_coding chr6:41204263 chr6:41204266 synonymous SNV . 0 24 hm5C_associated_SNPs_112763 0 0 0 0 2 TREML4 chr6:41204355 5'GT 41204355 Upstream 90bp
chr2 231235641 231235641 1 + C T PAAD 231235640 + 231235620 231235660 41 CAGGAGAAGTGCCAGAAAGCCCGGAAGCAAGGAAGGAAAGT CAGGAGAAGTGCCAGAAAGCCTGGAAGCAAGGAAGGAAAGT < 41bp 0.51432699514438 0.750284954968701 0.47034064 0.3784703 prediction 0.471915919648642 Functional Gain - SP140L ENSG00000185404 CDS Human protein_coding chr2:231235640 chr2:231235641 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_112765 0 0 0 0 1 SP140L chr2:231235682 5'GT 231235682 Upstream 42bp
chr16 68849604 68849604 1 + C T BLCA 68849603 + 68849583 68849623 41 TCCGAGGACTTTGGCGTGGGCCAGGAAATCACATCCTACAC TCCGAGGACTTTGGCGTGGGCTAGGAAATCACATCCTACAC < 41bp 0.512839742281402 0.748797105051933 0.20216629 0.06658581 prediction 0.471914725541062 Functional Gain - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68849603 chr16:68849604 stopgain 0.485 0 22 hm5C_associated_SNPs_112766 0 0 1 0 1 CDH1 chr16:68849662 5'GT 68849662 Upstream 59bp
chr20 19496146 19496146 1 + C T SKCM 19496145 + 19496125 19496165 41 TCTTTAGCCCTGCATGAATTCCCCAATGACATCTTCACAAA TCTTTAGCCCTGCATGAATTCTCCAATGACATCTTCACAAA < 41bp 0.552880368170659 0.788836254554428 0.26179838 0.9635219 prediction 0.471911772767538 Functional Gain - SLC24A3 ENSG00000185052 CDS Human protein_coding chr20:19496145 chr20:19496146 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_112767 0 0 0 0 2 SLC24A3 chr20:19496132 3'AG 19496132 Downstream 15bp
chr20 19496146 19496146 1 + C T SKCM 19496145 + 19496125 19496165 41 TCTTTAGCCCTGCATGAATTCCCCAATGACATCTTCACAAA TCTTTAGCCCTGCATGAATTCTCCAATGACATCTTCACAAA < 41bp 0.552880368170659 0.788836254554428 0.26179838 0.9635219 prediction 0.471911772767538 Functional Gain - SLC24A3 ENSG00000185052 CDS Human protein_coding chr20:19496145 chr20:19496146 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_112767 0 0 0 0 2 SLC24A3 chr20:19496208 5'GT 19496208 Upstream 63bp
chr19 35832673 35832673 1 + C T SKCM 35832672 + 35832652 35832692 41 ATGGAGGGGAAGAGTGCAACCCTGACCTGTGAGAGCGACGC ATGGAGGGGAAGAGTGCAACCTTGACCTGTGAGAGCGACGC < 41bp 0.545669728211979 0.781624180655344 0.053713053 0.121053904 prediction 0.47190890488673 Functional Gain - CD22 ENSG00000012124 CDS Human protein_coding chr19:35832672 chr19:35832673 synonymous SNV . 0 22 hm5C_associated_SNPs_112768 0 0 0 0 1 CD22 chr19:35832605 3'AG 35832605 Downstream 69bp
chr3 45533060 45533060 1 + C T UCEC 45533059 + 45533039 45533079 41 CTAGCCCTGACTCAGAAAGCCCGGGGGAAGAGAGTGGGTGG CTAGCCCTGACTCAGAAAGCCTGGGGGAAGAGAGTGGGTGG < 41bp 0.527319974590444 0.76327394014035 0.68958545 0.5797084 prediction 0.471907931099811 Functional Gain - LARS2 ENSG00000011376 CDS Human protein_coding chr3:45533059 chr3:45533060 nonsynonymous SNV 0.968 4 22 hm5C_associated_SNPs_112769 0 0 1 0 1 LARS2 chr3:45533009 3'AG 45533009 Downstream 52bp
chr1 163325197 163325197 1 + T A COAD 163325193 + 163325173 163325213 41 ATTGAAAAGGCAGCAGAGGACTCCTATGCTAAGATAGATGA ATTGAAAAGGCAGCAGAGGACTCCAATGCTAAGATAGATGA < 41bp 0.651326777035747 0.887280474962043 0.13255903 0.91925275 prediction 0.471907395852592 Functional Gain - NUF2 ENSG00000143228 CDS Human protein_coding chr1:163325193 chr1:163325197 nonsynonymous SNV 0.066 0 25 hm5C_associated_SNPs_112770 0 0 1 0 1 NUF2 chr1:163325125 3'AG 163325125 Downstream 73bp
chr11 2338593 2338593 1 + C A SKCM 2338592 + 2338572 2338612 41 AGAGCATGTGGCCGCCAGCCCCAGGAGCCCAGCCTCTTGAG AGAGCATGTGGCCGCCAGCCCAAGGAGCCCAGCCTCTTGAG < 41bp 0.541396317708376 0.777334149975087 0.91728795 0.9264841 prediction 0.471875664533421 Functional Gain - TSPAN32 ENSG00000064201 CDS Human other chr11:2338592 chr11:2338593 nonsynonymous SNV 0.610 2 22 hm5C_associated_SNPs_112773 0 0 0 1 1 TSPAN32 chr11:2338574 3'AG 2338574 Downstream 20bp
chr17 7942824 7942824 1 + C A rs368311556 7942823 + 7942803 7942843 41 GCCCCGGATGCCTGGTTCTGCCGCTGGTTCCAGCTGACACC GCCCCGGATGCCTGGTTCTGCAGCTGGTTCCAGCTGACACC < 41bp 0.493259570067683 0.735931387917294 0.39270365 0.7482345 prediction 0.471862775834588 Functional Gain - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7942823 chr17:7942824 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_112777 0 0 0 0 1 ALOX15B chr17:7942923 5'GT 7942923 Upstream 100bp
chr17 27064895 27064895 1 + C A STAD 27064894 + 27064874 27064914 41 ACCACTGTCGTCAGTGTATGCCTGGGGTGGTGGGCTGGGCA ACCACTGTCGTCAGTGTATGCATGGGGTGGTGGGCTGGGCA < 41bp 0.562822867117272 0.798752761242631 0.4875035 0.41393328 prediction 0.471859788250718 Functional Gain - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27064894 chr17:27064895 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_112778 0 0 1 0 1 NEK8 chr17:27064837 3'AG 27064837 Downstream 59bp
chr20 30689189 30689189 1 + C T UCEC 30689188 + 30689168 30689208 41 TGCCTCGCCCAGAGAACTGCCCAGAGGAGCTCTACAACATC TGCCTCGCCCAGAGAACTGCCTAGAGGAGCTCTACAACATC < 41bp 0.557877122731395 0.793805842028297 0.09847775 0.02367884 prediction 0.471857438593804 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30689188 chr20:30689189 nonsynonymous SNV 0.826 4 22 hm5C_associated_SNPs_112779 0 0 0 0 1 HCK chr20:30689120 3'AG 30689120 Downstream 70bp
chr2 28631707 28631707 1 + C T STAD 28631706 + 28631686 28631726 41 GCCAAGTGCCGGAACCGACGCCGGGAGCTGACAGAGAAGCT GCCAAGTGCCGGAACCGACGCTGGGAGCTGACAGAGAAGCT < 41bp 0.525114360019498 0.761031190473682 0.8556969 0.5511321 prediction 0.471833660908367 Functional Gain - FOSL2 ENSG00000075426 CDS Human protein_coding chr2:28631706 chr2:28631707 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_112783 0 0 1 0 2 FOSL2 chr2:28631626 3'AG 28631626 Downstream 82bp
chr2 28631707 28631707 1 + C T STAD 28631706 + 28631686 28631726 41 GCCAAGTGCCGGAACCGACGCCGGGAGCTGACAGAGAAGCT GCCAAGTGCCGGAACCGACGCTGGGAGCTGACAGAGAAGCT < 41bp 0.525114360019498 0.761031190473682 0.8556969 0.5511321 prediction 0.471833660908367 Functional Gain - FOSL2 ENSG00000075426 CDS Human protein_coding chr2:28631706 chr2:28631707 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_112783 0 0 1 0 2 FOSL2 chr2:28631733 5'GT 28631733 Upstream 27bp
chr1 32049126 32049126 1 + C T ESCA 32049125 + 32049105 32049145 41 GATGAGGGCATTCGCTACCGCCTGGGCACCATCCGCCCATC GATGAGGGCATTCGCTACCGCTTGGGCACCATCCGCCCATC < 41bp 0.487683563906317 0.73591402653099 0.14774898 0.078311 prediction 0.47182805306198 Functional Gain - TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32049125 chr1:32049126 synonymous SNV . 0 22 hm5C_associated_SNPs_112784 0 0 1 0 2 TINAGL1 chr1:32049062 3'AG 32049062 Downstream 65bp
chr1 32049126 32049126 1 + C T ESCA 32049125 + 32049105 32049145 41 GATGAGGGCATTCGCTACCGCCTGGGCACCATCCGCCCATC GATGAGGGCATTCGCTACCGCTTGGGCACCATCCGCCCATC < 41bp 0.487683563906317 0.73591402653099 0.14774898 0.078311 prediction 0.47182805306198 Functional Gain - TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32049125 chr1:32049126 synonymous SNV . 0 22 hm5C_associated_SNPs_112784 0 0 1 0 2 TINAGL1 chr1:32049176 5'GT 32049176 Upstream 51bp
chr19 39589259 39589259 1 + C T COAD 39589258 + 39589238 39589278 41 CGGCGGAAGCTCTACATACACCGAGTCACGCTTCGCAAGCT CGGCGGAAGCTCTACATACACTGAGTCACGCTTCGCAAGCT < 41bp 0.523218891584321 0.75913173883353 0.64971936 0.4061219 prediction 0.471825694498418 Functional Gain - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39589258 chr19:39589259 stopgain 0.880 1 22 hm5C_associated_SNPs_112785 0 0 0 0 1 ACP7 chr19:39589298 5'GT 39589298 Upstream 40bp
chr11 13721892 13721892 1 + C T SKCM 13721891 + 13721871 13721911 41 ACAGATTGAGAGATGAAAATCCAGATTTTAGAGAGAAAATT ACAGATTGAGAGATGAAAATCTAGATTTTAGAGAGAAAATT < 41bp 0.515043193098265 0.750942707234281 0.12128723 0.07726222 prediction 0.471799028272031 Functional Gain - FAR1 ENSG00000197601 CDS Human protein_coding chr11:13721891 chr11:13721892 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112786 0 0 1 0 1 FAR1 chr11:13721864 3'AG 13721864 Downstream 29bp
chr17 73739838 73739838 1 + C T COAD 73739837 + 73739817 73739857 41 CAGCCTGAGTTCTCGGTCAGCCGCGGGGACCAGGTGGCCCG CAGCCTGAGTTCTCGGTCAGCTGCGGGGACCAGGTGGCCCG < 41bp 0.53241737972307 0.768311095969 0.27767476 0.30844638 prediction 0.471787432491859 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73739837 chr17:73739838 nonsynonymous SNV 0.007 2 22 hm5C_associated_SNPs_112787 0 0 0 0 1 ITGB4 chr17:73739794 3'AG 73739794 Downstream 45bp
chr5 1244767 1244767 1 + C A HNSC 1244766 + 1244746 1244786 41 TGACCGGGAGGCGGCCCAGCCCCTACTGGCGGCTGACCTGG TGACCGGGAGGCGGCCCAGCCACTACTGGCGGCTGACCTGG < 41bp 0.482214621735343 0.735892921160937 0.093839675 0.60411096 prediction 0.471785842321873 Functional Gain - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1244766 chr5:1244767 nonsynonymous SNV 0.326 1 22 hm5C_associated_SNPs_112788 0 0 0 0 1 SLC6A18 chr5:1244723 3'AG 1244723 Downstream 45bp
chr15 27126103 27126103 1 + C T READ 27126102 + 27126082 27126122 41 GCTACGACAACAGACTTCGGCCCGGGCTGGGAGGTGAGTGT GCTACGACAACAGACTTCGGCTCGGGCTGGGAGGTGAGTGT < 41bp 0.486920206799215 0.735885952431556 0.35106778 0.3768756 prediction 0.471771904863113 Functional Gain - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27126102 chr15:27126103 nonsynonymous SNV 0.765 5 22 hm5C_associated_SNPs_112791 0 0 0 0 1 GABRA5 chr15:27126114 5'GT 27126114 Upstream 12bp
chr11 59834493 59834493 1 + C G LUAD 59834489 + 59834469 59834509 41 CTAGTGGGGACTGCTTTTCTCTCACTAAATATAGCAGTTAA CTAGTGGGGACTGCTTTTCTCTCAGTAAATATAGCAGTTAA < 41bp 0.452253999618619 0.735885887052786 0.014855266 0.0799655 prediction 0.471771774105571 Functional Gain - MS4A3 ENSG00000149516 CDS Human protein_coding chr11:59834489 chr11:59834493 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_112792 0 0 1 0 2 MS4A3 chr11:59834424 3'AG 59834424 Downstream 70bp
chr11 59834493 59834493 1 + C G LUAD 59834489 + 59834469 59834509 41 CTAGTGGGGACTGCTTTTCTCTCACTAAATATAGCAGTTAA CTAGTGGGGACTGCTTTTCTCTCAGTAAATATAGCAGTTAA < 41bp 0.452253999618619 0.735885887052786 0.014855266 0.0799655 prediction 0.471771774105571 Functional Gain - MS4A3 ENSG00000149516 CDS Human protein_coding chr11:59834489 chr11:59834493 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_112792 0 0 1 0 2 MS4A3 chr11:59834585 5'GT 59834585 Upstream 93bp
chr22 36123236 36123236 1 + C G KIRC 36123235 + 36123215 36123255 41 GAGGATCCCGTGTGGTTAAACCAGAAGGTAGGAAGGCAGCG GAGGATCCCGTGTGGTTAAACGAGAAGGTAGGAAGGCAGCG < 41bp 0.624344035838662 0.860222500129352 0.17059776 0.2969945 prediction 0.471756928581381 Functional Gain - APOL5 ENSG00000128313 CDS Human protein_coding chr22:36123235 chr22:36123236 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_112794 0 0 0 0 1 APOL5 chr22:36123241 5'GT 36123241 Upstream 6bp
chr1 28282220 28282220 1 + C T BLCA 28282219 + 28282199 28282239 41 ACATTGTCGGCCACGTGCCCCCGGGGTTCTTTGAGAAGACG ACATTGTCGGCCACGTGCCCCTGGGGTTCTTTGAGAAGACG < 41bp 0.498175515650645 0.735875215294011 0.38516927 0.31733182 prediction 0.471750430588022 Functional Gain - SMPDL3B ENSG00000130768 CDS Human protein_coding chr1:28282219 chr1:28282220 nonsynonymous SNV 0.486 4 22 hm5C_associated_SNPs_112795 0 0 0 0 1 SMPDL3B chr1:28282195 3'AG 28282195 Downstream 26bp
chr17 33498478 33498478 1 + C T GBM 33498477 + 33498457 33498497 41 GCATGTGCCCGAGGAACACCCCAAGGTAGGGTCAGGCGCGA GCATGTGCCCGAGGAACACCCTAAGGTAGGGTCAGGCGCGA < 41bp 0.51334152953021 0.749205615641193 0.5540944 0.4286115 prediction 0.471728172221967 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33498477 chr17:33498478 synonymous SNV . 0 22 hm5C_associated_SNPs_112798 0 0 0 0 1 UNC45B chr17:33498481 5'GT 33498481 Upstream 4bp
chr1 206566186 206566186 1 + C T BLCA 206566185 + 206566165 206566205 41 GACCCCACGCTCCCCTGACTCCACGGCCAACGTTCGCATTG GACCCCACGCTCCCCTGACTCTACGGCCAACGTTCGCATTG < 41bp 0.563315191011417 0.799173497317354 0.9015777 0.90456486 prediction 0.471716612611875 Functional Gain - SRGAP2 ENSG00000163486 CDS Human other chr1:206566185 chr1:206566186 synonymous SNV . 0 22 hm5C_associated_SNPs_112799 0 0 1 0 1 SRGAP2 chr1:206566261 5'GT 206566261 Upstream 76bp
chr6 159642680 159642680 1 + C T GBM 159642679 + 159642659 159642699 41 CAGTCCATGAACTCTCAGGGCCGGAGCCAACCAGTCTACAG CAGTCCATGAACTCTCAGGGCTGGAGCCAACCAGTCTACAG < 41bp 0.517151831447341 0.752998520948208 0.17636022 0.13337412 prediction 0.471693379001733 Functional Gain - FNDC1 ENSG00000164694 CDS Human protein_coding chr6:159642679 chr6:159642680 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_112801 0 0 0 0 2 FNDC1 chr6:159642630 3'AG 159642630 Downstream 51bp
chr6 159642680 159642680 1 + C T GBM 159642679 + 159642659 159642699 41 CAGTCCATGAACTCTCAGGGCCGGAGCCAACCAGTCTACAG CAGTCCATGAACTCTCAGGGCTGGAGCCAACCAGTCTACAG < 41bp 0.517151831447341 0.752998520948208 0.17636022 0.13337412 prediction 0.471693379001733 Functional Gain - FNDC1 ENSG00000164694 CDS Human protein_coding chr6:159642679 chr6:159642680 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_112801 0 0 0 0 2 FNDC1 chr6:159642728 5'GT 159642728 Upstream 49bp
chrX 118123451 118123451 1 + T A LUAD 118123447 + 118123427 118123467 41 TGGCAGCAGTCTGATGGACCCAGCTAAAGTGAAGGGGGATG TGGCAGCAGTCTGATGGACCCAGCAAAAGTGAAGGGGGATG < 41bp 0.419644523946993 0.735829631550786 0.33311802 0.6513387 prediction 0.471659263101572 Functional Gain - LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118123447 chrX:118123451 synonymous SNV . 0 25 hm5C_associated_SNPs_112806 0 0 1 0 1 LONRF3 chrX:118123371 3'AG 118123371 Downstream 81bp
chr17 78178916 78178916 1 + C G rs61757652 78178915 + 78178895 78178935 41 GCCCCATCGACCCGCCCGGCCCCGGCCTGTGCTCCTCGTGC GCCCCATCGACCCGCCCGGCCGCGGCCTGTGCTCCTCGTGC < 41bp 0.419602613560994 0.735823327086052 0.14815614 0.39888868 prediction 0.471646654172103 Functional Gain - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78178915 chr17:78178916 synonymous SNV . 0 22 hm5C_associated_SNPs_112808 0 0 0 0 2 CARD14 chr17:78178834 3'AG 78178834 Downstream 83bp
chr17 78178916 78178916 1 + C G rs61757652 78178915 + 78178895 78178935 41 GCCCCATCGACCCGCCCGGCCCCGGCCTGTGCTCCTCGTGC GCCCCATCGACCCGCCCGGCCGCGGCCTGTGCTCCTCGTGC < 41bp 0.419602613560994 0.735823327086052 0.14815614 0.39888868 prediction 0.471646654172103 Functional Gain - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78178915 chr17:78178916 synonymous SNV . 0 22 hm5C_associated_SNPs_112808 0 0 0 0 2 CARD14 chr17:78179004 5'GT 78179004 Upstream 89bp
chr19 44721973 44721973 1 + C T COAD 44721972 + 44721952 44721992 41 TCTCAGAACTATGACCTTCCCCAGAAGAAGCAGGAGAAAAT TCTCAGAACTATGACCTTCCCTAGAAGAAGCAGGAGAAAAT < 41bp 0.535940663858941 0.771758312194008 0.3260256 0.21187505 prediction 0.471635296670134 Functional Gain - ZNF227 ENSG00000131115 CDS Human protein_coding chr19:44721972 chr19:44721973 stopgain 0.445 0 22 hm5C_associated_SNPs_112813 0 0 1 0 1 ZNF227 chr19:44722005 5'GT 44722005 Upstream 33bp
chr19 50157674 50157674 1 + C G ACC 50157673 + 50157653 50157693 41 GCGAAGGCCCAGGAGCTGATCCAGGCCACCAACCAGGTGGG GCGAAGGCCCAGGAGCTGATCGAGGCCACCAACCAGGTGGG < 41bp 0.42243279219408 0.73581588608091 0.90628386 0.9272727 prediction 0.471631772161821 Functional Gain - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50157673 chr19:50157674 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112814 0 0 1 0 2 SCAF1 chr19:50157606 3'AG 50157606 Downstream 69bp
chr19 50157674 50157674 1 + C G ACC 50157673 + 50157653 50157693 41 GCGAAGGCCCAGGAGCTGATCCAGGCCACCAACCAGGTGGG GCGAAGGCCCAGGAGCTGATCGAGGCCACCAACCAGGTGGG < 41bp 0.42243279219408 0.73581588608091 0.90628386 0.9272727 prediction 0.471631772161821 Functional Gain - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50157673 chr19:50157674 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112814 0 0 1 0 2 SCAF1 chr19:50157688 5'GT 50157688 Upstream 15bp
chr17 35783653 35783653 1 + C A SKCM 35783649 + 35783629 35783669 41 CCTTGCCGAGGCTGCTCCTCCTACCTCATGGAGCCTTATAT CCTTGCCGAGGCTGCTCCTCCTACATCATGGAGCCTTATAT < 41bp 0.299574690815897 0.735803074452517 0.074640304 0.3906431 prediction 0.471606148905034 Functional Gain - TADA2A ENSG00000108264 CDS Human other chr17:35783649 chr17:35783653 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_112816 0 0 1 0 1 TADA2A chr17:35783715 5'GT 35783715 Upstream 63bp
chr20 42264576 42264576 1 + C G LGG 42264572 + 42264552 42264592 41 GATTATGAACACAGGGCTCACGAGCAGCTAAATGTGAAACA GATTATGAACACAGGGCTCACGAGGAGCTAAATGTGAAACA < 41bp 0.449953156495133 0.735800889900386 0.19781232 0.7196778 prediction 0.471601779800771 Functional Gain - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42264572 chr20:42264576 nonsynonymous SNV 0.964 0 25 hm5C_associated_SNPs_112818 0 0 1 2 2 IFT52 chr20:42264566 3'AG 42264566 Downstream 11bp
chr20 42264576 42264576 1 + C G LGG 42264572 + 42264552 42264592 41 GATTATGAACACAGGGCTCACGAGCAGCTAAATGTGAAACA GATTATGAACACAGGGCTCACGAGGAGCTAAATGTGAAACA < 41bp 0.449953156495133 0.735800889900386 0.19781232 0.7196778 prediction 0.471601779800771 Functional Gain - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42264572 chr20:42264576 nonsynonymous SNV 0.964 0 25 hm5C_associated_SNPs_112818 0 0 1 2 2 IFT52 chr20:42264653 5'GT 42264653 Upstream 78bp
chr17 60472523 60472523 1 + C T LUSC 60472522 + 60472502 60472542 41 TCTAGAGACTTCAGCCCTACCCAGAAAGTCTATAATAGAAA TCTAGAGACTTCAGCCCTACCTAGAAAGTCTATAATAGAAA < 41bp 0.548932985529054 0.784733443670778 0.021845728 0.011329412 prediction 0.471600916283448 Functional Gain - EFCAB3 ENSG00000172421 CDS Human protein_coding chr17:60472522 chr17:60472523 synonymous SNV . 0 22 hm5C_associated_SNPs_112819 0 0 0 0 2 EFCAB3 chr17:60472429 3'AG 60472429 Downstream 95bp
chr17 60472523 60472523 1 + C T LUSC 60472522 + 60472502 60472542 41 TCTAGAGACTTCAGCCCTACCCAGAAAGTCTATAATAGAAA TCTAGAGACTTCAGCCCTACCTAGAAAGTCTATAATAGAAA < 41bp 0.548932985529054 0.784733443670778 0.021845728 0.011329412 prediction 0.471600916283448 Functional Gain - EFCAB3 ENSG00000172421 CDS Human protein_coding chr17:60472522 chr17:60472523 synonymous SNV . 0 22 hm5C_associated_SNPs_112819 0 0 0 0 2 EFCAB3 chr17:60472549 5'GT 60472549 Upstream 27bp
chr8 95690597 95690597 1 + C A SKCM 95690596 + 95690576 95690616 41 GAATTACACAGCGTACTATCCCAGGTAAGGCTCTGACAGAG GAATTACACAGCGTACTATCCAAGGTAAGGCTCTGACAGAG < 41bp 0.554864882399131 0.790663678578525 0.85601103 0.85406435 prediction 0.471597592358789 Functional Gain - ESRP1 ENSG00000104413 CDS Human protein_coding chr8:95690596 chr8:95690597 synonymous SNV . 0 22 hm5C_associated_SNPs_112820 0 0 0 0 1 ESRP1 chr8:95690599 5'GT 95690599 Upstream 3bp
chr1 161187791 161187791 1 + C A LUSC 161187790 + 161187770 161187810 41 CCTCAGCGGCCCTGGGAGAGCCTCAGCTCTGCTATATCCTG CCTCAGCGGCCCTGGGAGAGCATCAGCTCTGCTATATCCTG < 41bp 0.555954302511486 0.791748556425595 0.27208328 0.40402153 prediction 0.471588507828216 Functional Gain - FCER1G ENSG00000158869 CDS Human protein_coding chr1:161187790 chr1:161187791 nonsynonymous SNV 0.884 4 22 hm5C_associated_SNPs_112821 0 0 0 0 2 FCER1G chr1:161187776 3'AG 161187776 Downstream 16bp
chr1 161187791 161187791 1 + C A LUSC 161187790 + 161187770 161187810 41 CCTCAGCGGCCCTGGGAGAGCCTCAGCTCTGCTATATCCTG CCTCAGCGGCCCTGGGAGAGCATCAGCTCTGCTATATCCTG < 41bp 0.555954302511486 0.791748556425595 0.27208328 0.40402153 prediction 0.471588507828216 Functional Gain - FCER1G ENSG00000158869 CDS Human protein_coding chr1:161187790 chr1:161187791 nonsynonymous SNV 0.884 4 22 hm5C_associated_SNPs_112821 0 0 0 0 2 FCER1G chr1:161187867 5'GT 161187867 Upstream 77bp
chr6 35254164 35254164 1 + C T UCEC 35254163 + 35254143 35254183 41 GGCAGCATGGCTTACATACACCGCACACCCAGAGGTAGGGT GGCAGCATGGCTTACATACACTGCACACCCAGAGGTAGGGT < 41bp 0.551796730367897 0.787583436871217 0.079841554 0.08945447 prediction 0.47157341300664 Functional Gain - ZNF76 ENSG00000065029 CDS Human protein_coding chr6:35254163 chr6:35254164 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_112824 0 0 1 0 2 ZNF76 chr6:35254099 3'AG 35254099 Downstream 66bp
chr6 35254164 35254164 1 + C T UCEC 35254163 + 35254143 35254183 41 GGCAGCATGGCTTACATACACCGCACACCCAGAGGTAGGGT GGCAGCATGGCTTACATACACTGCACACCCAGAGGTAGGGT < 41bp 0.551796730367897 0.787583436871217 0.079841554 0.08945447 prediction 0.47157341300664 Functional Gain - ZNF76 ENSG00000065029 CDS Human protein_coding chr6:35254163 chr6:35254164 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_112824 0 0 1 0 2 ZNF76 chr6:35254176 5'GT 35254176 Upstream 13bp
chrX 9912900 9912900 1 + C T UCEC 9912899 + 9912879 9912919 41 TCGCTGTCAGGCCGCCTGGCCCGGGTGGAGAATGCCCTCAA TCGCTGTCAGGCCGCCTGGCCTGGGTGGAGAATGCCCTCAA < 41bp 0.489326603203813 0.735785857678089 0.7929641 0.6255451 prediction 0.471571715356178 Functional Gain - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9912899 chrX:9912900 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112825 0 0 0 0 1 SHROOM2 chrX:9912953 5'GT 9912953 Upstream 54bp
chr19 39214837 39214837 1 + C T STAD 39214836 + 39214816 39214856 41 ACCAGTTCAAGTCCACCCTGCCGGACGCCGATAGGGAGCGC ACCAGTTCAAGTCCACCCTGCTGGACGCCGATAGGGAGCGC < 41bp 0.556501794796379 0.792283706677496 0.068210125 0.15622684 prediction 0.471563823762233 Functional Gain - ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39214836 chr19:39214837 nonsynonymous SNV 0.092 1 22 hm5C_associated_SNPs_112826 0 0 1 0 1 ACTN4 chr19:39214797 3'AG 39214797 Downstream 41bp
chr1 110032729 110032729 1 + C T SKCM 110032728 + 110032708 110032748 41 CCCTGACTGCCATTATGCAACCCGGCCCCCACGGCCACAGG CCCTGACTGCCATTATGCAACTCGGCCCCCACGGCCACAGG < 41bp 0.500276349384682 0.73605089904172 0.09472692 0.040377557 prediction 0.471549099314076 Functional Gain - ATXN7L2 ENSG00000162650 CDS Human protein_coding chr1:110032728 chr1:110032729 synonymous SNV . 0 22 hm5C_associated_SNPs_112829 0 0 1 0 1 ATXN7L2 chr1:110032750 5'GT 110032750 Upstream 22bp
chr17 10608272 10608272 1 + T G rs549050775 10608269 + 10608249 10608289 41 TGATAAACCCAATCCTGAAGCCCTAAGTGACAGTTCAGAGC TGATAAACCCAATCCTGAAGCCCGAAGTGACAGTTCAGAGC < 41bp 0.353377408118408 0.735770049629456 0.10338071 0.056290537 prediction 0.471540099258913 Functional Gain - ADPRM ENSG00000170222 CDS Human protein_coding chr17:10608269 chr17:10608272 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_112831 0 0 1 0 1 ADPRM chr17:10608227 3'AG 10608227 Downstream 46bp
chr16 55361546 55361546 1 + C T SKCM 55361545 + 55361525 55361565 41 CGGTCGCCGAAAGAACGCGACCCGGGAGACCACCAGTACAC CGGTCGCCGAAAGAACGCGACTCGGGAGACCACCAGTACAC < 41bp 0.56178381432117 0.79755249496542 0.40718362 0.29207915 prediction 0.4715373612885 Functional Gain - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55361545 chr16:55361546 synonymous SNV . 0 22 hm5C_associated_SNPs_112832 0 0 0 0 1 IRX6 chr16:55361498 3'AG 55361498 Downstream 49bp
chr17 7359930 7359930 1 + T C rs201776800 7359928 + 7359908 7359948 41 GAGGACTGGCAGTTTGTGGCCATGGTAGTGGACCGCCTCTT GAGGACTGGCAGTTTGTGGCCACGGTAGTGGACCGCCTCTT < 41bp 0.467488768492716 0.735767757874443 0.44322795 0.42513013 prediction 0.471535515748886 Functional Gain - CHRNB1 ENSG00000170175 CDS Human protein_coding chr17:7359928 chr17:7359930 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_112833 0 0 0 0 1 CHRNB1 chr17:7359902 3'AG 7359902 Downstream 29bp
chr6 84772654 84772654 1 + T C LUSC 84772652 + 84772632 84772672 41 TGGGTTGGTCTTGCAGTCTTCGTGATTTTTATGTTTTTTGT TGGGTTGGTCTTGCAGTCTTCGCGATTTTTATGTTTTTTGT < 41bp 0.609135462808677 0.844899064314284 0.2412104 0.16229185 prediction 0.471527203011215 Functional Gain - MRAP2 ENSG00000135324 CDS Human protein_coding chr6:84772652 chr6:84772654 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_112837 0 0 0 0 1 MRAP2 chr6:84772612 3'AG 84772612 Downstream 43bp
chr22 32498214 32498214 1 + C T BLCA 32498213 + 32498193 32498233 41 CCCTCCTCACCAAACCCATTCCGGATGTGCATGTGAGTATC CCCTCCTCACCAAACCCATTCTGGATGTGCATGTGAGTATC < 41bp 0.483335168167508 0.735761432531296 0.3001097 0.34995082 prediction 0.471522865062591 Functional Gain - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32498213 chr22:32498214 nonsynonymous SNV 0.990 2 22 hm5C_associated_SNPs_112839 0 0 0 0 1 SLC5A1 chr22:32498224 5'GT 32498224 Upstream 11bp
chr10 98092351 98092351 1 + C A SKCM 98092350 + 98092330 98092370 41 CTGTTGGGATGGACTGGCTCCCGGGTAAGTGCTACATGGAC CTGTTGGGATGGACTGGCTCCAGGGTAAGTGCTACATGGAC < 41bp 0.569554924850004 0.805307262479275 0.89604914 0.87294567 prediction 0.471504675258542 Functional Gain - DNTT ENSG00000107447 CDS Human protein_coding chr10:98092350 chr10:98092351 synonymous SNV . 0 22 hm5C_associated_SNPs_112842 0 0 0 0 1 DNTT chr10:98092353 5'GT 98092353 Upstream 3bp
chrX 147084778 147084778 1 + A G COAD 147084775 + 147084755 147084795 41 CCTGCCCAACAGTGAAAATGCTCATGGCCAATCTCTGGAAG CCTGCCCAACAGTGAAAATGCTCGTGGCCAATCTCTGGAAG < 41bp 0.52538209244061 0.761126387469954 0.08583093 0.10250926 prediction 0.471488590058688 Functional Gain - FMR1NB ENSG00000176988 CDS Human protein_coding chrX:147084775 chrX:147084778 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_112844 0 0 0 0 1 FMR1NB chrX:147084840 5'GT 147084840 Upstream 63bp
chr10 82187109 82187109 1 + A G UCEC 82187106 + 82187086 82187126 41 AGAAAAAGTTCTATGGTCCACAAAGGCGGAAGATGATGTTT AGAAAAAGTTCTATGGTCCACAAGGGCGGAAGATGATGTTT < 41bp 0.503042013006501 0.738775297748358 0.25127783 0.45266777 prediction 0.471466569483714 Functional Gain - FAM213A ENSG00000122378 CDS Human protein_coding chr10:82187106 chr10:82187109 nonsynonymous SNV 0.988 1 24 hm5C_associated_SNPs_112846 0 0 1 0 1 FAM213A chr10:82187088 3'AG 82187088 Downstream 22bp
chr14 23945564 23945564 1 + C T COAD 23945563 + 23945543 23945583 41 TCAGATGCTCCAGAGGAAATCCGTGATGCTCGGCATCCCCA TCAGATGCTCCAGAGGAAATCTGTGATGCTCGGCATCCCCA < 41bp 0.49014571012383 0.735733043737764 0.38179642 0.3381354 prediction 0.471466087475528 Functional Gain - NGDN ENSG00000129460 CDS Human protein_coding chr14:23945563 chr14:23945564 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112847 0 0 1 1 1 NGDN chr14:23945616 5'GT 23945616 Upstream 53bp
chr1 36788037 36788037 1 + C A LGG 36788036 + 36788016 36788056 41 CTCCAGCCGCTGCGCCCGCTCCAGCTCCTCCGCCGACGTGA CTCCAGCCGCTGCGCCCGCTCAAGCTCCTCCGCCGACGTGA < 41bp 0.485196848227384 0.735731392754402 0.5164141 0.51402175 prediction 0.471462785508804 Functional Gain - EVA1B ENSG00000142694 CDS Human protein_coding chr1:36788036 chr1:36788037 synonymous SNV . 0 22 hm5C_associated_SNPs_112848 0 0 1 0 1 EVA1B chr1:36787968 3'AG 36787968 Downstream 70bp
chr16 14940535 14940535 1 + C A rs142422425 14940531 + 14940511 14940551 41 CCAGTCCACAGTTACACAGCCTGGCGGAAAGTGAGTAGCGT CCAGTCCACAGTTACACAGCCTGGAGGAAAGTGAGTAGCGT < 41bp 0.31317774530276 0.735724042800225 0.09521076 0.101097226 prediction 0.47144808560045 Functional Gain - NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14940531 chr16:14940535 synonymous SNV . 0 25 hm5C_associated_SNPs_112851 0 0 0 0 1 NOMO1 chr16:14940540 5'GT 14940540 Upstream 6bp
chr7 99704334 99704334 1 + C G LUAD 99704330 + 99704310 99704350 41 CAGCCATGGGCTCTCCACCTCGGCCTCTCCTCTGGGGCTGG CAGCCATGGGCTCTCCACCTCGGCGTCTCCTCTGGGGCTGG < 41bp 0.595452116714316 0.831175936539074 0.82428956 0.9168867 prediction 0.471447639649515 Functional Gain - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99704330 chr7:99704334 synonymous SNV . 0 25 hm5C_associated_SNPs_112852 0 0 0 0 1 AP4M1 chr7:99704281 3'AG 99704281 Downstream 54bp
chr20 25257371 25257371 1 + C G LUSC 25257367 + 25257347 25257387 41 GCGGCTGTGGTCCGCCAAGGCTCCCAACGACTTCAAGCTGC GCGGCTGTGGTCCGCCAAGGCTCCGAACGACTTCAAGCTGC < 41bp 0.437489783710993 0.735712220350418 0.038571388 0.04796645 prediction 0.471424440700837 Functional Gain - PYGB ENSG00000100994 CDS Human protein_coding chr20:25257367 chr20:25257371 synonymous SNV . 0 25 hm5C_associated_SNPs_112854 0 0 1 0 2 PYGB chr20:25257282 3'AG 25257282 Downstream 90bp
chr20 25257371 25257371 1 + C G LUSC 25257367 + 25257347 25257387 41 GCGGCTGTGGTCCGCCAAGGCTCCCAACGACTTCAAGCTGC GCGGCTGTGGTCCGCCAAGGCTCCGAACGACTTCAAGCTGC < 41bp 0.437489783710993 0.735712220350418 0.038571388 0.04796645 prediction 0.471424440700837 Functional Gain - PYGB ENSG00000100994 CDS Human protein_coding chr20:25257367 chr20:25257371 synonymous SNV . 0 25 hm5C_associated_SNPs_112854 0 0 1 0 2 PYGB chr20:25257393 5'GT 25257393 Upstream 23bp
chr7 55223633 55223633 1 + C T GBM 55223632 + 55223612 55223652 41 AAGAAGTGCGAAGGGCCTTGCCGCAAAGGTAGGAAGCCCGC AAGAAGTGCGAAGGGCCTTGCTGCAAAGGTAGGAAGCCCGC < 41bp 0.538296119228026 0.774005576058196 0.2590157 0.29223537 prediction 0.47141891366034 Functional Gain - EGFR ENSG00000146648 CDS Human protein_coding chr7:55223632 chr7:55223633 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_112855 0 0 0 0 1 EGFR chr7:55223639 5'GT 55223639 Upstream 7bp
chr19 3198864 3198864 1 + T C UCEC 3198862 + 3198842 3198882 41 GACCTTCCCACCATCGTCATCGTGGCCCACTACGACGCCTT GACCTTCCCACCATCGTCATCGCGGCCCACTACGACGCCTT < 41bp 0.544930544031084 0.780627822815732 0.90584654 0.90590376 prediction 0.471394557569295 Functional Gain - NCLN ENSG00000125912 CDS Human protein_coding chr19:3198862 chr19:3198864 nonsynonymous SNV 0.082 2 23 hm5C_associated_SNPs_112858 0 0 1 0 1 NCLN chr19:3198895 5'GT 3198895 Upstream 32bp
chr17 7907173 7907173 1 + T G LUAD 7907170 + 7907150 7907190 41 AGCCAAGCCTCTGTCCGCAGCAGTGATCATGGTGATGCACT AGCCAAGCCTCTGTCCGCAGCAGGGATCATGGTGATGCACT < 41bp 0.329012206038609 0.735692778544679 0.89021 0.8863255 prediction 0.471385557089358 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7907170 chr17:7907173 nonsynonymous SNV 0.967 4 24 hm5C_associated_SNPs_112863 0 0 0 0 1 GUCY2D chr17:7907170 3'AG 7907170 Downstream 4bp
chr16 68389763 68389763 1 + C G rs140260314 68389762 + 68389742 68389782 41 GCCCCTGCAGCCCCTGTGTGCCGAGGGCACCGTGGAGCTCA GCCCCTGCAGCCCCTGTGTGCGGAGGGCACCGTGGAGCTCA < 41bp 0.63829267250431 0.873978871004076 0.8640574 0.90766776 prediction 0.471372396999531 Functional Gain - PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68389762 chr16:68389763 synonymous SNV . 0 22 hm5C_associated_SNPs_112865 0 0 1 0 1 PRMT7 chr16:68389786 5'GT 68389786 Upstream 24bp
chr7 102575051 102575051 1 + C T SKCM 102575050 + 102575030 102575070 41 CCCCAAGTGTCAGGGAGACCCCCAGTCATCAAGCCTGAGGT CCCCAAGTGTCAGGGAGACCCTCAGTCATCAAGCCTGAGGT < 41bp 0.522192757919144 0.757876878216105 0.12667695 0.14144278 prediction 0.471368240593922 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102575050 chr7:102575051 nonsynonymous SNV 0.976 0 22 hm5C_associated_SNPs_112866 0 0 0 0 1 LRRC17 chr7:102575132 5'GT 102575132 Upstream 82bp
chr20 39983347 39983347 1 + C T SKCM 39983346 + 39983326 39983366 41 GGGTGGGCGATGGTGGTTTTCCTGGCGACGCAGGGACTTCC GGGTGGGCGATGGTGGTTTTCTTGGCGACGCAGGGACTTCC < 41bp 0.484298469107585 0.73567428501664 0.8102652 0.32299086 prediction 0.471348570033281 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39983346 chr20:39983347 synonymous SNV . 0 22 hm5C_associated_SNPs_112869 0 0 1 0 2 LPIN3 chr20:39983285 3'AG 39983285 Downstream 63bp
chr20 39983347 39983347 1 + C T SKCM 39983346 + 39983326 39983366 41 GGGTGGGCGATGGTGGTTTTCCTGGCGACGCAGGGACTTCC GGGTGGGCGATGGTGGTTTTCTTGGCGACGCAGGGACTTCC < 41bp 0.484298469107585 0.73567428501664 0.8102652 0.32299086 prediction 0.471348570033281 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39983346 chr20:39983347 synonymous SNV . 0 22 hm5C_associated_SNPs_112869 0 0 1 0 2 LPIN3 chr20:39983377 5'GT 39983377 Upstream 31bp
chr20 2633563 2633563 1 + C G rs116445545 2633559 + 2633539 2633579 41 CTGAAGGAAGTGGAGGAGATCAGTCTGCTGCAGCCGCAGGT CTGAAGGAAGTGGAGGAGATCAGTGTGCTGCAGCCGCAGGT < 41bp 0.60071184942954 0.836385963072025 0.7707553 0.82846344 prediction 0.471348227284971 Functional Gain - NOP56 ENSG00000101361 CDS Human protein_coding chr20:2633559 chr20:2633563 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_112871 0 0 1 0 1 NOP56 chr20:2633577 5'GT 2633577 Upstream 15bp
chr7 5269346 5269346 1 + T C COAD 5269344 + 5269324 5269364 41 GCTGCAGGAAAAGGTACTTACGTGCCTTCATCCCCAACGAG GCTGCAGGAAAAGGTACTTACGCGCCTTCATCCCCAACGAG < 41bp 0.476225260563865 0.735671935118782 0.4390595 0.21207148 prediction 0.471343870237565 Functional Gain - WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5269344 chr7:5269346 nonsynonymous SNV 0.689 0 23 hm5C_associated_SNPs_112873 0 0 0 0 1 WIPI2 chr7:5269369 5'GT 5269369 Upstream 24bp
chr9 36199092 36199092 1 + T C LGG 36199090 + 36199070 36199110 41 AAATGGAACGCTTGGAAGCCCTTGGTAAGGAATCCCTTCTG AAATGGAACGCTTGGAAGCCCTCGGTAAGGAATCCCTTCTG < 41bp 0.580862920176951 0.816531850109898 0.26744866 0.2586398 prediction 0.471337859865893 Functional Gain - CLTA ENSG00000122705 CDS Human protein_coding chr9:36199090 chr9:36199092 synonymous SNV . 0 23 hm5C_associated_SNPs_112875 0 0 1 0 1 CLTA chr9:36199093 5'GT 36199093 Upstream 2bp
chr1 160326852 160326852 1 + C T SKCM 160326851 + 160326831 160326871 41 CTGTATGAGTACTCATGGGTCCAGGGCCCTTTGCATTCTAA CTGTATGAGTACTCATGGGTCTAGGGCCCTTTGCATTCTAA < 41bp 0.51095918327013 0.746615615606811 0.19832274 0.18075824 prediction 0.471312864673362 Functional Gain - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160326851 chr1:160326852 stopgain 0.954 1 22 hm5C_associated_SNPs_112879 0 0 1 0 1 NCSTN chr1:160326831 3'AG 160326831 Downstream 22bp
chr19 45848858 45848858 1 + C A UCEC 45848857 + 45848837 45848877 41 TGGGCCCAGAGCGCCTGAGCCCTGAGGAGCTGGTGCGGCAG TGGGCCCAGAGCGCCTGAGCCATGAGGAGCTGGTGCGGCAG < 41bp 0.552201309566639 0.787852460878366 0.26529276 0.475773 prediction 0.471302302623456 Functional Gain - KLC3 ENSG00000104892 CDS Human protein_coding chr19:45848857 chr19:45848858 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_112883 0 0 1 0 1 KLC3 chr19:45848792 3'AG 45848792 Downstream 67bp
chr8 22175705 22175705 1 + C T SKCM 22175704 + 22175684 22175724 41 ACCCTCACAAAATGGTATTCCCGGGTGGTGTTCCAGATGCC ACCCTCACAAAATGGTATTCCTGGGTGGTGTTCCAGATGCC < 41bp 0.488021283804123 0.735650893581333 0.82404804 0.4663397 prediction 0.471301787162666 Functional Gain - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22175704 chr8:22175705 nonsynonymous SNV 0.975 3 22 hm5C_associated_SNPs_112884 0 0 0 0 2 PIWIL2 chr8:22175683 3'AG 22175683 Downstream 23bp
chr8 22175705 22175705 1 + C T SKCM 22175704 + 22175684 22175724 41 ACCCTCACAAAATGGTATTCCCGGGTGGTGTTCCAGATGCC ACCCTCACAAAATGGTATTCCTGGGTGGTGTTCCAGATGCC < 41bp 0.488021283804123 0.735650893581333 0.82404804 0.4663397 prediction 0.471301787162666 Functional Gain - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22175704 chr8:22175705 nonsynonymous SNV 0.975 3 22 hm5C_associated_SNPs_112884 0 0 0 0 2 PIWIL2 chr8:22175788 5'GT 22175788 Upstream 84bp
chr3 182631701 182631701 1 + C T COAD 182631700 + 182631680 182631720 41 TGGACTCCATGTGCTGTTTCCCGGAAGGAGAAGCAGCGTGT TGGACTCCATGTGCTGTTTCCTGGAAGGAGAAGCAGCGTGT < 41bp 0.550737443711446 0.786380999019479 0.7976246 0.49493393 prediction 0.471287110616066 Functional Gain - ATP11B ENSG00000058063 CDS Human protein_coding chr3:182631700 chr3:182631701 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_112885 0 0 1 0 1 ATP11B chr3:182631649 3'AG 182631649 Downstream 53bp
chr3 113321989 113321989 1 + C T BLCA 113321988 + 113321968 113322008 41 GAGAGTGATAAAAACATCATCCGGACCAAGGTACCCACTCT GAGAGTGATAAAAACATCATCTGGACCAAGGTACCCACTCT < 41bp 0.534628471399229 0.770272018095177 0.19620037 0.066538066 prediction 0.471287093391896 Functional Gain - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113321988 chr3:113321989 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112886 0 0 0 2 1 SIDT1 chr3:113321997 5'GT 113321997 Upstream 9bp
chr1 165624685 165624685 1 + C A HNSC 165624684 + 165624664 165624704 41 ACAACTGTGTGCTCTGCTTTCCAGCATCTTGGTTGGGTTAA ACAACTGTGTGCTCTGCTTTCAAGCATCTTGGTTGGGTTAA < 41bp 0.547264529003866 0.782903163580646 0.5510859 0.7735482 prediction 0.47127726915356 Functional Gain - MGST3 ENSG00000143198 CDS Human protein_coding chr1:165624684 chr1:165624685 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_112888 0 0 1 0 1 MGST3 chr1:165624605 3'AG 165624605 Downstream 81bp
chr10 101515451 101515451 1 + C A LUAD 101515450 + 101515430 101515470 41 CCTAAAGGTAACAGATGTGACCAAAGTAAGGACTTTGAATG CCTAAAGGTAACAGATGTGACAAAAGTAAGGACTTTGAATG < 41bp 0.533934488348373 0.769564389631066 0.106695 0.28401488 prediction 0.471259802565387 Functional Gain - CUTC ENSG00000119929 CDS Human protein_coding chr10:101515450 chr10:101515451 synonymous SNV . 0 22 hm5C_associated_SNPs_112889 0 0 1 1 1 CUTC chr10:101515382 3'AG 101515382 Downstream 70bp
chr5 161576278 161576278 1 + C A SKCM 161576277 + 161576257 161576297 41 TTGCATTATTTTGTCAGCAACCGGAAACCAAGCAAGGACAA TTGCATTATTTTGTCAGCAACAGGAAACCAAGCAAGGACAA < 41bp 0.547788710174402 0.783417891759051 0.24082851 0.38209194 prediction 0.471258363169298 Functional Gain - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161576277 chr5:161576278 synonymous SNV . 0 22 hm5C_associated_SNPs_112890 0 0 0 0 1 GABRG2 chr5:161576319 5'GT 161576319 Upstream 42bp
chr7 141833949 141833949 1 + C T UCEC 141833948 + 141833928 141833968 41 CACCCGGGACGCTACCCCCACCGAGGTGAGGTGGCTTTCCT CACCCGGGACGCTACCCCCACTGAGGTGAGGTGGCTTTCCT < 41bp 0.49793718276004 0.735627910546798 0.5108236 0.35425436 prediction 0.471255821093595 Functional Gain - MGAM2 ENSG00000257743 CDS Human protein_coding chr7:141833948 chr7:141833949 synonymous SNV . 0 22 hm5C_associated_SNPs_112892 0 0 0 0 1 MGAM2 chr7:141833952 5'GT 141833952 Upstream 4bp
chr16 57220340 57220340 1 + C G rs74471685 57220339 + 57220319 57220359 41 GCCGCCGCCGCCCCCTCCCTCCGGTGGGCCCGGGAGGTAGA GCCGCCGCCGCCCCCTCCCTCGGGTGGGCCCGGGAGGTAGA < 41bp 0.622731169825968 0.858340148745675 0.47044846 0.920725 prediction 0.471217957839414 Functional Gain - RSPRY1 ENSG00000159579 UTR5 Human protein_coding chr16:57220339 chr16:57220340 . . 0 22 hm5C_associated_SNPs_112896 0 0 1 0 2 RSPRY1 chr16:57220341 5'GT 57220341 Upstream 2bp
chr16 57220340 57220340 1 + C G rs74471685 57220339 + 57220319 57220359 41 GCCGCCGCCGCCCCCTCCCTCCGGTGGGCCCGGGAGGTAGA GCCGCCGCCGCCCCCTCCCTCGGGTGGGCCCGGGAGGTAGA < 41bp 0.622731169825968 0.858340148745675 0.47044846 0.920725 prediction 0.471217957839414 Functional Gain - RSPRY1 ENSG00000159579 UTR5 Human protein_coding chr16:57220339 chr16:57220340 . . 0 22 hm5C_associated_SNPs_112896 0 0 1 0 2 RSPRY1 chr16:57220363 5'GT 57220363 Upstream 24bp
chr8 11607632 11607632 1 + C T GBM 11607631 + 11607611 11607651 41 GTCTTGCAGTCCGCCTCCCGCCGAGTGGGCCTCTCCTGTGC GTCTTGCAGTCCGCCTCCCGCTGAGTGGGCCTCTCCTGTGC < 41bp 0.534039495624424 0.769642492321302 0.49211466 0.40188333 prediction 0.471205993393758 Functional Gain - GATA4 ENSG00000136574 CDS Human protein_coding chr8:11607631 chr8:11607632 stopgain 1.000 1 22 hm5C_associated_SNPs_112897 0 0 1 0 1 GATA4 chr8:11607620 3'AG 11607620 Downstream 13bp
chr8 24251659 24251659 1 + T C rs7007084 24251657 + 24251637 24251677 41 ATTACCACGAAACCTGAGAACATGGTAGGGTCCGAATACTT ATTACCACGAAACCTGAGAACACGGTAGGGTCCGAATACTT < 41bp 0.551472124042216 0.787071408836297 0.16723505 0.18343672 prediction 0.471198569588162 Functional Gain - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24251657 chr8:24251659 nonsynonymous SNV 0.046 0 23 hm5C_associated_SNPs_112898 0 0 0 0 2 ADAMDEC1 chr8:24251582 3'AG 24251582 Downstream 78bp
chr8 24251659 24251659 1 + T C rs7007084 24251657 + 24251637 24251677 41 ATTACCACGAAACCTGAGAACATGGTAGGGTCCGAATACTT ATTACCACGAAACCTGAGAACACGGTAGGGTCCGAATACTT < 41bp 0.551472124042216 0.787071408836297 0.16723505 0.18343672 prediction 0.471198569588162 Functional Gain - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24251657 chr8:24251659 nonsynonymous SNV 0.046 0 23 hm5C_associated_SNPs_112898 0 0 0 0 2 ADAMDEC1 chr8:24251660 5'GT 24251660 Upstream 2bp
chr2 74425805 74425805 1 + C A rs544541606 74425804 + 74425784 74425824 41 CTAATGTCTGCTTTGGCTGCCCGGCTGCTGCAGCCCGCGCA CTAATGTCTGCTTTGGCTGCCAGGCTGCTGCAGCCCGCGCA < 41bp 0.52168962270936 0.757288442063564 0.2632274 0.7501621 prediction 0.471197638708407 Functional Gain - MTHFD2 ENSG00000065911 CDS Human protein_coding chr2:74425804 chr2:74425805 synonymous SNV . 0 22 hm5C_associated_SNPs_112899 0 0 1 0 1 MTHFD2 chr2:74425869 5'GT 74425869 Upstream 65bp
chrX 54953521 54953521 1 + C A COAD 54953517 + 54953497 54953537 41 GGAAGTGAGGAAGCTCATCACAGACGAGTTTGTGAAGCAGA GGAAGTGAGGAAGCTCATCACAGAAGAGTTTGTGAAGCAGA < 41bp 0.33092075262548 0.735598369468892 0.38882083 0.47986242 prediction 0.471196738937783 Functional Gain - TRO ENSG00000067445 CDS Human protein_coding chrX:54953517 chrX:54953521 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_112900 0 0 1 0 2 TRO chrX:54953476 3'AG 54953476 Downstream 46bp
chrX 54953521 54953521 1 + C A COAD 54953517 + 54953497 54953537 41 GGAAGTGAGGAAGCTCATCACAGACGAGTTTGTGAAGCAGA GGAAGTGAGGAAGCTCATCACAGAAGAGTTTGTGAAGCAGA < 41bp 0.33092075262548 0.735598369468892 0.38882083 0.47986242 prediction 0.471196738937783 Functional Gain - TRO ENSG00000067445 CDS Human protein_coding chrX:54953517 chrX:54953521 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_112900 0 0 1 0 2 TRO chrX:54953538 5'GT 54953538 Upstream 18bp
chr15 40702973 40702973 1 + C A LUSC 40702972 + 40702952 40702992 41 GTACGCAATGGGAATGAGGCCCAGAAAGAGAAGTATCTCCC GTACGCAATGGGAATGAGGCCAAGAAAGAGAAGTATCTCCC < 41bp 0.470728507406479 0.735598059208508 0.17424044 0.41131935 prediction 0.471196118417015 Functional Gain - IVD ENSG00000128928 CDS Human protein_coding chr15:40702972 chr15:40702973 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_112901 0 0 1 0 1 IVD chr15:40702996 5'GT 40702996 Upstream 24bp
chr4 1808329 1808329 1 + C T SKCM 1808328 + 1808308 1808348 41 CGCTGGGGGGCTCCCCGTACCCCGGCATCCCTGTGGAGGAG CGCTGGGGGGCTCCCCGTACCTCGGCATCCCTGTGGAGGAG < 41bp 0.556956670524008 0.792552823320429 0.19553465 0.09518027 prediction 0.471192305592842 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1808328 chr4:1808329 nonsynonymous SNV 0.556 4 22 hm5C_associated_SNPs_112904 0 0 1 0 2 FGFR3 chr4:1808273 3'AG 1808273 Downstream 57bp
chr4 1808329 1808329 1 + C T SKCM 1808328 + 1808308 1808348 41 CGCTGGGGGGCTCCCCGTACCCCGGCATCCCTGTGGAGGAG CGCTGGGGGGCTCCCCGTACCTCGGCATCCCTGTGGAGGAG < 41bp 0.556956670524008 0.792552823320429 0.19553465 0.09518027 prediction 0.471192305592842 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1808328 chr4:1808329 nonsynonymous SNV 0.556 4 22 hm5C_associated_SNPs_112904 0 0 1 0 2 FGFR3 chr4:1808410 5'GT 1808410 Upstream 82bp
chr17 9615367 9615367 1 + C A COAD 9615366 + 9615346 9615386 41 CACAAGGGGAAGCCTGCTGTCCTGGAGCTCTGCCCCCTGCC CACAAGGGGAAGCCTGCTGTCATGGAGCTCTGCCCCCTGCC < 41bp 0.471641399144401 0.735585396398661 0.38981366 0.88676655 prediction 0.471170792797323 Functional Gain - USP43 ENSG00000154914 CDS Human protein_coding chr17:9615366 chr17:9615367 synonymous SNV . 0 22 hm5C_associated_SNPs_112906 0 0 0 0 1 USP43 chr17:9615285 3'AG 9615285 Downstream 83bp
chr11 117062612 117062612 1 + T C COAD 117062610 + 117062590 117062630 41 CTAGACACATCGTTCATGTACATGATCGCCGGACTCTGCAT CTAGACACATCGTTCATGTACACGATCGCCGGACTCTGCAT < 41bp 0.603406906955256 0.838990189576064 0.031125665 0.0151260495 prediction 0.471166565241616 Functional Gain - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117062610 chr11:117062612 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_112907 0 0 1 0 1 SIDT2 chr11:117062594 3'AG 117062594 Downstream 19bp
chr17 77042735 77042735 1 + C T OV 77042734 + 77042714 77042754 41 ACCCCGGTACCTCCATGTACCCGGCGACCGCCGTGCCCCAG ACCCCGGTACCTCCATGTACCTGGCGACCGCCGTGCCCCAG < 41bp 0.523508202332524 0.759090253425397 0.9104073 0.40747434 prediction 0.471164102185748 Functional Gain - C1QTNF1 ENSG00000173918 CDS Human protein_coding chr17:77042734 chr17:77042735 nonsynonymous SNV 0.066 0 22 hm5C_associated_SNPs_112909 0 0 0 0 2 C1QTNF1 chr17:77042637 3'AG 77042637 Downstream 99bp
chr17 77042735 77042735 1 + C T OV 77042734 + 77042714 77042754 41 ACCCCGGTACCTCCATGTACCCGGCGACCGCCGTGCCCCAG ACCCCGGTACCTCCATGTACCTGGCGACCGCCGTGCCCCAG < 41bp 0.523508202332524 0.759090253425397 0.9104073 0.40747434 prediction 0.471164102185748 Functional Gain - C1QTNF1 ENSG00000173918 CDS Human protein_coding chr17:77042734 chr17:77042735 nonsynonymous SNV 0.066 0 22 hm5C_associated_SNPs_112909 0 0 0 0 2 C1QTNF1 chr17:77042776 5'GT 77042776 Upstream 42bp
chr19 16631001 16631001 1 + T C UCEC 16630999 + 16630979 16631019 41 ACCGTGACCGGCGTCTTCTTCCTGGGGAGTACGACTTGGAC ACCGTGACCGGCGTCTTCTTCCCGGGGAGTACGACTTGGAC < 41bp 0.555612642517831 0.791189210655959 0.8370199 0.93412834 prediction 0.471153136276257 Functional Gain - CHERP ENSG00000085872 CDS Human protein_coding chr19:16630999 chr19:16631001 synonymous SNV . 0 23 hm5C_associated_SNPs_112910 0 0 0 0 1 C19orf44 chr19:16630905 3'AG 16630905 Downstream 97bp
chr17 37825998 37825998 1 + C T UCEC 37825997 + 37825977 37826017 41 ACAGATTTCCTGGAGGTCAACCGCCAGGAGCTGGGGCGCTG ACAGATTTCCTGGAGGTCAACTGCCAGGAGCTGGGGCGCTG < 41bp 0.489118696582562 0.73557534012401 0.4925427 0.3143583 prediction 0.47115068024802 Functional Gain - PNMT ENSG00000141744 CDS Human protein_coding chr17:37825997 chr17:37825998 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_112911 0 0 1 0 1 PNMT chr17:37826089 5'GT 37826089 Upstream 92bp
chr19 12924217 12924217 1 + C T SKCM 12924216 + 12924196 12924236 41 CCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTTCCCACC CCTCAATGAAGGGTCCCAAGCTCGTCCCCGTTCTTCCCACC < 41bp 0.520783313463353 0.756354911733175 0.097868234 0.15129384 prediction 0.471143196539644 Functional Gain - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924216 chr19:12924217 synonymous SNV . 0 22 hm5C_associated_SNPs_112913 0 0 1 0 1 RNASEH2A chr19:12924142 3'AG 12924142 Downstream 76bp
chr12 22211514 22211514 1 + C T UCEC 22211513 + 22211493 22211533 41 GCTTTTAGTTCGTGAAGTGACCGAACCTCTGAATTTAAATC GCTTTTAGTTCGTGAAGTGACTGAACCTCTGAATTTAAATC < 41bp 0.513539069126609 0.749105785242206 0.07037264 0.12508437 prediction 0.471133432231194 Functional Gain - CMAS ENSG00000111726 CDS Human protein_coding chr12:22211513 chr12:22211514 synonymous SNV . 0 22 hm5C_associated_SNPs_112916 0 0 1 0 1 CMAS chr12:22211501 3'AG 22211501 Downstream 14bp
chr3 169500335 169500335 1 + C T LUAD 169500334 + 169500314 169500354 41 AGCACACTGACCTATCATGTCCGTAGGCATACTGGAGAAAA AGCACACTGACCTATCATGTCTGTAGGCATACTGGAGAAAA < 41bp 0.469576629072529 0.735566382090219 0.16321522 0.16991428 prediction 0.471132764180437 Functional Gain - MYNN ENSG00000085274 CDS Human protein_coding chr3:169500334 chr3:169500335 nonsynonymous SNV 0.947 4 22 hm5C_associated_SNPs_112917 0 0 0 0 2 MYNN chr3:169500253 3'AG 169500253 Downstream 83bp
chr3 169500335 169500335 1 + C T LUAD 169500334 + 169500314 169500354 41 AGCACACTGACCTATCATGTCCGTAGGCATACTGGAGAAAA AGCACACTGACCTATCATGTCTGTAGGCATACTGGAGAAAA < 41bp 0.469576629072529 0.735566382090219 0.16321522 0.16991428 prediction 0.471132764180437 Functional Gain - MYNN ENSG00000085274 CDS Human protein_coding chr3:169500334 chr3:169500335 nonsynonymous SNV 0.947 4 22 hm5C_associated_SNPs_112917 0 0 0 0 2 MYNN chr3:169500431 5'GT 169500431 Upstream 97bp
chr4 189065197 189065197 1 + C G UCEC 189065193 + 189065173 189065213 41 TCTCTGCTCTCTTGCAGGAGCGAGCCACTCTTGCTTCAGTG TCTCTGCTCTCTTGCAGGAGCGAGGCACTCTTGCTTCAGTG < 41bp 0.428230772470168 0.735565513887899 0.814017 0.9290379 prediction 0.471131027775799 Functional Gain - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189065193 chr4:189065197 nonsynonymous SNV 0.060 0 25 hm5C_associated_SNPs_112918 0 0 0 0 2 TRIML1 chr4:189065190 3'AG 189065190 Downstream 8bp
chr4 189065197 189065197 1 + C G UCEC 189065193 + 189065173 189065213 41 TCTCTGCTCTCTTGCAGGAGCGAGCCACTCTTGCTTCAGTG TCTCTGCTCTCTTGCAGGAGCGAGGCACTCTTGCTTCAGTG < 41bp 0.428230772470168 0.735565513887899 0.814017 0.9290379 prediction 0.471131027775799 Functional Gain - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189065193 chr4:189065197 nonsynonymous SNV 0.060 0 25 hm5C_associated_SNPs_112918 0 0 0 0 2 TRIML1 chr4:189065287 5'GT 189065287 Upstream 91bp
chr19 39961030 39961030 1 + C T LUSC 39961029 + 39961009 39961049 41 CCTGGCAGCTGAAGGTGCTCCCCCGGGACCTGCAGCTCTGC CCTGGCAGCTGAAGGTGCTCCTCCGGGACCTGCAGCTCTGC < 41bp 0.467469823593567 0.735555799926833 0.13836285 0.22617191 prediction 0.471111599853666 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39961029 chr19:39961030 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_112919 0 0 1 0 1 SUPT5H chr19:39961017 3'AG 39961017 Downstream 14bp
chr1 230907775 230907775 1 + C T COAD 230907774 + 230907754 230907794 41 TTCTAGGTAAGCTTCCGAGGCCAGAGAATCGAGCTCATCCG TTCTAGGTAAGCTTCCGAGGCTAGAGAATCGAGCTCATCCG < 41bp 0.514449322135492 0.750004349595735 0.91064596 0.26369268 prediction 0.471110054920486 Functional Gain - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230907774 chr1:230907775 stopgain 0.372 0 22 hm5C_associated_SNPs_112920 0 0 0 0 2 CAPN9 chr1:230907760 3'AG 230907760 Downstream 16bp
chr1 230907775 230907775 1 + C T COAD 230907774 + 230907754 230907794 41 TTCTAGGTAAGCTTCCGAGGCCAGAGAATCGAGCTCATCCG TTCTAGGTAAGCTTCCGAGGCTAGAGAATCGAGCTCATCCG < 41bp 0.514449322135492 0.750004349595735 0.91064596 0.26369268 prediction 0.471110054920486 Functional Gain - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230907774 chr1:230907775 stopgain 0.372 0 22 hm5C_associated_SNPs_112920 0 0 0 0 2 CAPN9 chr1:230907845 5'GT 230907845 Upstream 71bp
chr1 177226500 177226500 1 + A G UCEC 177226497 + 177226477 177226517 41 TGCGACGGCTGCACCATATCCAGATAGCCACGGGGGCCATC TGCGACGGCTGCACCATATCCAGGTAGCCACGGGGGCCATC < 41bp 0.533492385949713 0.769047029586034 0.8176668 0.90884453 prediction 0.471109287272643 Functional Gain - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177226497 chr1:177226500 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_112921 0 0 0 0 1 BRINP2 chr1:177226520 5'GT 177226520 Upstream 21bp
chr11 64974002 64974002 1 + A G rs540577957 64973999 + 64973979 64974019 41 GCCAATGCGTCTCGGGCGCGCTCAGAGCAGTTCATCAACCT GCCAATGCGTCTCGGGCGCGCTCGGAGCAGTTCATCAACCT < 41bp 0.519489910549953 0.755040065626719 0.7389688 0.7057703 prediction 0.471100310153532 Functional Gain - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64973999 chr11:64974002 synonymous SNV . 0 24 hm5C_associated_SNPs_112922 0 0 1 0 1 CAPN1 chr11:64973934 3'AG 64973934 Downstream 69bp
chr5 68665752 68665752 1 + T A rs183631076 68665748 + 68665728 68665768 41 TCTTCGCCTAAAAGGGGATGCAGCTCCGGGAAAGTAAGGCC TCTTCGCCTAAAAGGGGATGCAGCACCGGGAAAGTAAGGCC < 41bp 0.573027912020651 0.808577782986689 0.48039103 0.3212492 prediction 0.471099741932077 Functional Gain - AK6;RAD17;TAF9 ENSG00000085231;ENSG00000152942 UTR5 Human other chr5:68665748 chr5:68665752 . . 0 25 hm5C_associated_SNPs_112923 0 0 1 0 1 AK6;RAD17;TAF9 chr5:68665760 5'GT 68665760 Upstream 9bp
chr4 1807859 1807859 1 + C T UCEC 1807858 + 1807838 1807878 41 ATCGCAGACTTCGGGCTGGCCCGGGACGTGCACAACCTCGA ATCGCAGACTTCGGGCTGGCCTGGGACGTGCACAACCTCGA < 41bp 0.490435967300956 0.735545982236413 0.43151927 0.8158636 prediction 0.471091964472827 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1807858 chr4:1807859 nonsynonymous SNV 0.057 5 22 hm5C_associated_SNPs_112925 0 0 1 0 2 FGFR3 chr4:1807778 3'AG 1807778 Downstream 82bp
chr4 1807859 1807859 1 + C T UCEC 1807858 + 1807838 1807878 41 ATCGCAGACTTCGGGCTGGCCCGGGACGTGCACAACCTCGA ATCGCAGACTTCGGGCTGGCCTGGGACGTGCACAACCTCGA < 41bp 0.490435967300956 0.735545982236413 0.43151927 0.8158636 prediction 0.471091964472827 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1807858 chr4:1807859 nonsynonymous SNV 0.057 5 22 hm5C_associated_SNPs_112925 0 0 1 0 2 FGFR3 chr4:1807900 5'GT 1807900 Upstream 42bp
chr1 110032947 110032947 1 + C T COAD 110032946 + 110032926 110032966 41 GGATGCTATGTGTTTAGCCGCCGGCTGGACCGGTTCTGCTC GGATGCTATGTGTTTAGCCGCTGGCTGGACCGGTTCTGCTC < 41bp 0.498647042231942 0.735541709878466 0.3606871 0.164576 prediction 0.471083419756932 Functional Gain - ATXN7L2 ENSG00000162650 CDS Human protein_coding chr1:110032946 chr1:110032947 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112928 0 0 1 0 2 ATXN7L2 chr1:110032893 3'AG 110032893 Downstream 55bp
chr1 110032947 110032947 1 + C T COAD 110032946 + 110032926 110032966 41 GGATGCTATGTGTTTAGCCGCCGGCTGGACCGGTTCTGCTC GGATGCTATGTGTTTAGCCGCTGGCTGGACCGGTTCTGCTC < 41bp 0.498647042231942 0.735541709878466 0.3606871 0.164576 prediction 0.471083419756932 Functional Gain - ATXN7L2 ENSG00000162650 CDS Human protein_coding chr1:110032946 chr1:110032947 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112928 0 0 1 0 2 ATXN7L2 chr1:110033014 5'GT 110033014 Upstream 68bp
chr1 196645149 196645149 1 + T C LUAD 196645147 + 196645127 196645167 41 TGCTAGGTGAGATTAATTACCGTGAATGTGACACAGATGGA TGCTAGGTGAGATTAATTACCGCGAATGTGACACAGATGGA < 41bp 0.600684462910034 0.836223962650615 0.16111284 0.1628598 prediction 0.471078999481161 Functional Gain - CFH ENSG00000000971 CDS Human protein_coding chr1:196645147 chr1:196645149 synonymous SNV . 0 23 hm5C_associated_SNPs_112930 0 0 1 0 2 CFH chr1:196645119 3'AG 196645119 Downstream 31bp
chr1 196645149 196645149 1 + T C LUAD 196645147 + 196645127 196645167 41 TGCTAGGTGAGATTAATTACCGTGAATGTGACACAGATGGA TGCTAGGTGAGATTAATTACCGCGAATGTGACACAGATGGA < 41bp 0.600684462910034 0.836223962650615 0.16111284 0.1628598 prediction 0.471078999481161 Functional Gain - CFH ENSG00000000971 CDS Human protein_coding chr1:196645147 chr1:196645149 synonymous SNV . 0 23 hm5C_associated_SNPs_112930 0 0 1 0 2 CFH chr1:196645195 5'GT 196645195 Upstream 47bp
chr3 140997196 140997196 1 + C T LUAD 140997195 + 140997175 140997215 41 TCGTTTCAGTCCACCTGATCCCGGTGTCGACTCCTAAGAAT TCGTTTCAGTCCACCTGATCCTGGTGTCGACTCCTAAGAAT < 41bp 0.51108546502227 0.746623330046662 0.4607571 0.40246603 prediction 0.471075730048784 Functional Gain - PXYLP1 ENSG00000155893 CDS Human protein_coding chr3:140997195 chr3:140997196 nonsynonymous SNV 0.891 4 22 hm5C_associated_SNPs_112931 0 0 1 0 1 PXYLP1 chr3:140997184 3'AG 140997184 Downstream 13bp
chr22 27024260 27024260 1 + T C LUSC 27024258 + 27024238 27024278 41 CCCTGTTCCTGTAGAACCACCGTGACTCGAGGCTGACAATC CCCTGTTCCTGTAGAACCACCGCGACTCGAGGCTGACAATC < 41bp 0.593287918914129 0.828822004199392 0.22463125 0.81468666 prediction 0.471068170570527 Functional Gain - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27024258 chr22:27024260 synonymous SNV . 0 23 hm5C_associated_SNPs_112932 0 0 0 0 1 CRYBA4 chr22:27024252 3'AG 27024252 Downstream 9bp
chr19 5144082 5144082 1 + C T COAD 5144081 + 5144061 5144101 41 CCACGTGACCTGCGCCCACGCCGCAGGCGTGCTCATGGAGC CCACGTGACCTGCGCCCACGCTGCAGGCGTGCTCATGGAGC < 41bp 0.567247457249413 0.802775314219859 0.2877383 0.1838705 prediction 0.471055713940891 Functional Gain - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5144081 chr19:5144082 synonymous SNV . 0 22 hm5C_associated_SNPs_112933 0 0 1 0 1 KDM4B chr19:5144163 5'GT 5144163 Upstream 82bp
chr4 1222104 1222104 1 - T C BLCA 1222107 - 1222087 1222127 41 TGAACGAGGCTGTGGGGGCCCTGATGTACCACACCATCACT TGAACGAGGCTGTGGGGGCCCTGGTGTACCACACCATCACT < 41bp 0.49213488032133 0.735502842551399 0.4456988 0.7915499 prediction 0.471005685102798 Functional Gain - CTBP1 ENSG00000159692 CDS Human protein_coding chr4:1222107 chr4:1222104 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_112934 0 0 1 0 1 CTBP1 chr4:1222131 3'AG 1222131 Downstream 28bp
chr1 99470168 99470168 1 + C G BLCA 99470164 + 99470144 99470184 41 GTACGCCAGCATCACCGTCCCTGCCATGATCACCATCTGGA GTACGCCAGCATCACCGTCCCTGCGATGATCACCATCTGGA < 41bp 0.473641570303999 0.735501775730067 0.015266925 0.10684943 prediction 0.471003551460133 Functional Gain - PLPPR5 ENSG00000117598 CDS Human protein_coding chr1:99470164 chr1:99470168 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_112935 0 0 0 0 1 PLPPR5 chr1:99470201 5'GT 99470201 Upstream 34bp
chr12 118582456 118582456 1 + C T SKCM 118582455 + 118582435 118582475 41 CTAAAGTGTGACGAGCCCATCCTCAGCAACCGATCTGGAGA CTAAAGTGTGACGAGCCCATCTTCAGCAACCGATCTGGAGA < 41bp 0.481095541812865 0.735496008093894 0.05829853 0.13940465 prediction 0.470992016187788 Functional Gain - PEBP1 ENSG00000089220 CDS Human protein_coding chr12:118582455 chr12:118582456 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_112937 0 0 0 0 2 PEBP1 chr12:118582391 3'AG 118582391 Downstream 66bp
chr12 118582456 118582456 1 + C T SKCM 118582455 + 118582435 118582475 41 CTAAAGTGTGACGAGCCCATCCTCAGCAACCGATCTGGAGA CTAAAGTGTGACGAGCCCATCTTCAGCAACCGATCTGGAGA < 41bp 0.481095541812865 0.735496008093894 0.05829853 0.13940465 prediction 0.470992016187788 Functional Gain - PEBP1 ENSG00000089220 CDS Human protein_coding chr12:118582455 chr12:118582456 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_112937 0 0 0 0 2 PEBP1 chr12:118582441 3'AG 118582441 Downstream 16bp
chr7 150710887 150710887 1 - A G rs550098275 150710889 - 150710869 150710909 41 GTAACATCGCCGCAGACAAACATGTGGCCCCGCTCGAGGCA GTAACATCGCCGCAGACAAACACGTGGCCCCGCTCGAGGCA < 41bp 0.560425969187983 0.795913738653755 0.1020239 0.102218956 prediction 0.470975538931543 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150710889 chr7:150710887 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_112938 0 0 0 0 1 NOS3 chr7:150710818 5'GT 150710818 Upstream 70bp
chr12 56384490 56384490 1 + T C STAD 56384488 + 56384468 56384508 41 AACCTTTGCCCGAGCAAAGACATGGGTGAAGGAACTACAGC AACCTTTGCCCGAGCAAAGACACGGGTGAAGGAACTACAGC < 41bp 0.454991301777421 0.735468216698952 0.37901384 0.36754632 prediction 0.470936433397904 Functional Gain - RAB5B ENSG00000111540 CDS Human protein_coding chr12:56384488 chr12:56384490 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_112941 0 0 1 0 2 RAB5B chr12:56384466 3'AG 56384466 Downstream 25bp
chr12 56384490 56384490 1 + T C STAD 56384488 + 56384468 56384508 41 AACCTTTGCCCGAGCAAAGACATGGGTGAAGGAACTACAGC AACCTTTGCCCGAGCAAAGACACGGGTGAAGGAACTACAGC < 41bp 0.454991301777421 0.735468216698952 0.37901384 0.36754632 prediction 0.470936433397904 Functional Gain - RAB5B ENSG00000111540 CDS Human protein_coding chr12:56384488 chr12:56384490 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_112941 0 0 1 0 2 RAB5B chr12:56384588 5'GT 56384588 Upstream 99bp
chr16 24909415 24909415 1 + C T UCEC 24909414 + 24909394 24909434 41 GTGTTCCCTGGGATGGTCAGCCGCATCCTCTTCCCAGGTGA GTGTTCCCTGGGATGGTCAGCTGCATCCTCTTCCCAGGTGA < 41bp 0.481672455984872 0.735464810627325 0.2088545 0.26130104 prediction 0.470929621254651 Functional Gain - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24909414 chr16:24909415 nonsynonymous SNV 0.646 5 22 hm5C_associated_SNPs_112943 0 0 0 0 1 SLC5A11 chr16:24909430 5'GT 24909430 Upstream 16bp
chr4 71346542 71346542 1 + T C rs41382646 71346540 + 71346520 71346560 41 GTGAAGGTCGAGAAAGGGATCATGAACTACGTCACAGAAGG GTGAAGGTCGAGAAAGGGATCACGAACTACGTCACAGAAGG < 41bp 0.550428833601532 0.785887182540364 0.4203519 0.22927961 prediction 0.470916697877664 Functional Gain - MUC7 ENSG00000171195 CDS Human protein_coding chr4:71346540 chr4:71346542 synonymous SNV . 0 23 hm5C_associated_SNPs_112944 0 0 0 0 1 MUC7 chr4:71346516 3'AG 71346516 Downstream 27bp
chrX 69460009 69460009 1 + C T LUSC 69460008 + 69459988 69460028 41 GGGGAGCCTCTGCCACTGCCCCAAATTGAAAAGCCAAGCCA GGGGAGCCTCTGCCACTGCCCTAAATTGAAAAGCCAAGCCA < 41bp 0.51857240184181 0.754027121797546 0.7865445 0.37125617 prediction 0.470909439911471 Functional Gain - AWAT1 ENSG00000204195 CDS Human protein_coding chrX:69460008 chrX:69460009 stopgain 0.830 0 22 hm5C_associated_SNPs_112946 0 0 0 0 1 AWAT1 chrX:69459986 3'AG 69459986 Downstream 24bp
chr1 32740425 32740425 1 + C T GBM 32740424 + 32740404 32740444 41 GCTTCCCCACTGCAAGGTGACCCCAGGCAGCAGGGCCTGAA GCTTCCCCACTGCAAGGTGACTCCAGGCAGCAGGGCCTGAA < 41bp 0.480072637080906 0.735451590672293 0.6378834 0.9367997 prediction 0.470903181344587 Functional Gain - LCK ENSG00000182866 CDS Human protein_coding chr1:32740424 chr1:32740425 nonsynonymous SNV 0.260 0 22 hm5C_associated_SNPs_112947 0 0 0 0 1 LCK chr1:32740338 3'AG 32740338 Downstream 88bp
chr18 905487 905487 1 + C T SKCM 905486 + 905466 905506 41 GCCGCCGCCGGACTCCGGTTCCCCGGGATCAGGTAGGTGCT GCCGCCGCCGGACTCCGGTTCTCCGGGATCAGGTAGGTGCT < 41bp 0.49318713466224 0.73545097455092 0.064073175 0.07650927 prediction 0.47090194910184 Functional Gain - ADCYAP1 ENSG00000141433 CDS Human protein_coding chr18:905486 chr18:905487 nonsynonymous SNV 0.985 2 22 hm5C_associated_SNPs_112948 0 0 0 0 1 ADCYAP1 chr18:905497 5'GT 905497 Upstream 11bp
chr12 44176189 44176189 1 + C A THCA 44176188 + 44176168 44176208 41 CGGGCTTCTGAGAAGTTTGCCCAGACAGTCATGACTAGCAG CGGGCTTCTGAGAAGTTTGCCAAGACAGTCATGACTAGCAG < 41bp 0.542792985107281 0.778240678782505 0.13233572 0.41219464 prediction 0.470895387350448 Functional Gain - IRAK4 ENSG00000198001 CDS Human protein_coding chr12:44176188 chr12:44176189 nonsynonymous SNV 0.991 1 22 hm5C_associated_SNPs_112949 0 0 1 0 1 IRAK4 chr12:44176110 3'AG 44176110 Downstream 80bp
chr3 127981028 127981028 1 + C T GBM 127981027 + 127981007 127981047 41 GCCGGGGGGACCAGAGGCCCCCGAAACTGAAGCTCCACAGG GCCGGGGGGACCAGAGGCCCCTGAAACTGAAGCTCCACAGG < 41bp 0.501865506770713 0.737312821256952 0.46983406 0.58648753 prediction 0.470894628972478 Functional Gain - EEFSEC ENSG00000132394 CDS Human protein_coding chr3:127981027 chr3:127981028 synonymous SNV . 0 22 hm5C_associated_SNPs_112950 0 0 1 0 2 EEFSEC chr3:127980971 3'AG 127980971 Downstream 58bp
chr3 127981028 127981028 1 + C T GBM 127981027 + 127981007 127981047 41 GCCGGGGGGACCAGAGGCCCCCGAAACTGAAGCTCCACAGG GCCGGGGGGACCAGAGGCCCCTGAAACTGAAGCTCCACAGG < 41bp 0.501865506770713 0.737312821256952 0.46983406 0.58648753 prediction 0.470894628972478 Functional Gain - EEFSEC ENSG00000132394 CDS Human protein_coding chr3:127981027 chr3:127981028 synonymous SNV . 0 22 hm5C_associated_SNPs_112950 0 0 1 0 2 EEFSEC chr3:127981067 5'GT 127981067 Upstream 40bp
chr5 175793526 175793526 1 + C A UCEC 175793522 + 175793502 175793542 41 ACCGCTGGAAGGCCACATCCCCACCTGGGGCTTCAACTCCG ACCGCTGGAAGGCCACATCCCCACATGGGGCTTCAACTCCG < 41bp 0.302390194929719 0.735442845021939 0.34791207 0.8463634 prediction 0.470885690043878 Functional Gain - ARL10 ENSG00000175414 CDS Human protein_coding chr5:175793522 chr5:175793526 synonymous SNV . 0 25 hm5C_associated_SNPs_112954 0 0 0 0 1 ARL10 chr5:175793584 5'GT 175793584 Upstream 59bp
chr11 65004316 65004316 1 + C A rs185236993 65004315 + 65004295 65004335 41 GTCTGCGTCCTGACCGAGACCCGCAACATGCCCCTGGTGGA GTCTGCGTCCTGACCGAGACCAGCAACATGCCCCTGGTGGA < 41bp 0.539177942350795 0.774611779302836 0.1188674 0.10031089 prediction 0.470867673904082 Functional Gain - SLC22A20;POLA2 ENSG00000197847 ncRNA_exonic Human transcribed_unitary_pseudogene chr11:65004315 chr11:65004316 . . 0 22 hm5C_associated_SNPs_112956 0 0 0 0 1 SLC22A20;POLA2 chr11:65004359 5'GT 65004359 Upstream 44bp
chr1 226788371 226788371 1 + C T SKCM 226788370 + 226788350 226788390 41 ACTCTGTGCTGCTGCAGTTTCCCAAGGTGAGTCTGCGGATG ACTCTGTGCTGCTGCAGTTTCTCAAGGTGAGTCTGCGGATG < 41bp 0.52906255843813 0.764494955770449 0.3965351 0.6144861 prediction 0.470864794664639 Functional Gain - STUM ENSG00000203685 CDS Human protein_coding chr1:226788370 chr1:226788371 synonymous SNV . 0 22 hm5C_associated_SNPs_112957 0 0 0 0 2 STUM chr1:226788367 3'AG 226788367 Downstream 5bp
chr1 226788371 226788371 1 + C T SKCM 226788370 + 226788350 226788390 41 ACTCTGTGCTGCTGCAGTTTCCCAAGGTGAGTCTGCGGATG ACTCTGTGCTGCTGCAGTTTCTCAAGGTGAGTCTGCGGATG < 41bp 0.52906255843813 0.764494955770449 0.3965351 0.6144861 prediction 0.470864794664639 Functional Gain - STUM ENSG00000203685 CDS Human protein_coding chr1:226788370 chr1:226788371 synonymous SNV . 0 22 hm5C_associated_SNPs_112957 0 0 0 0 2 STUM chr1:226788375 5'GT 226788375 Upstream 5bp
chr12 64878240 64878240 1 + C T COAD 64878239 + 64878219 64878259 41 AACCCTATATTTGTAGTAAGCCGGGAACCTCTGAATACCAT AACCCTATATTTGTAGTAAGCTGGGAACCTCTGAATACCAT < 41bp 0.505681532939856 0.741111844913126 0.37527022 0.18712753 prediction 0.470860623946541 Functional Gain - TBK1 ENSG00000183735 CDS Human protein_coding chr12:64878239 chr12:64878240 nonsynonymous SNV 0.987 4 22 hm5C_associated_SNPs_112960 0 0 1 0 1 TBK1 chr12:64878279 5'GT 64878279 Upstream 40bp
chr20 61929348 61929348 1 + C A rs144861412 61929344 + 61929324 61929364 41 TCGGAGGGGAGCGGCCTCGGCTACCTGGTGCAGGTGAAGCC TCGGAGGGGAGCGGCCTCGGCTACATGGTGCAGGTGAAGCC < 41bp 0.316560721072203 0.735416786452574 0.323193 0.87582767 prediction 0.470833572905149 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61929344 chr20:61929348 nonsynonymous SNV 0.046 2 25 hm5C_associated_SNPs_112964 0 0 0 0 2 COL20A1 chr20:61929262 3'AG 61929262 Downstream 87bp
chr20 61929348 61929348 1 + C A rs144861412 61929344 + 61929324 61929364 41 TCGGAGGGGAGCGGCCTCGGCTACCTGGTGCAGGTGAAGCC TCGGAGGGGAGCGGCCTCGGCTACATGGTGCAGGTGAAGCC < 41bp 0.316560721072203 0.735416786452574 0.323193 0.87582767 prediction 0.470833572905149 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61929344 chr20:61929348 nonsynonymous SNV 0.046 2 25 hm5C_associated_SNPs_112964 0 0 0 0 2 COL20A1 chr20:61929372 5'GT 61929372 Upstream 25bp
chr17 27017169 27017169 1 + C T GBM 27017168 + 27017148 27017188 41 AGCTGTCGATATAAGGACCTCCGGACAGCCTACCGCTCTCC AGCTGTCGATATAAGGACCTCTGGACAGCCTACCGCTCTCC < 41bp 0.476363960639224 0.735412011652303 0.63846654 0.37096062 prediction 0.470824023304607 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27017168 chr17:27017169 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112965 0 0 1 0 2 SUPT6H chr17:27017100 3'AG 27017100 Downstream 70bp
chr17 27017169 27017169 1 + C T GBM 27017168 + 27017148 27017188 41 AGCTGTCGATATAAGGACCTCCGGACAGCCTACCGCTCTCC AGCTGTCGATATAAGGACCTCTGGACAGCCTACCGCTCTCC < 41bp 0.476363960639224 0.735412011652303 0.63846654 0.37096062 prediction 0.470824023304607 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27017168 chr17:27017169 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112965 0 0 1 0 2 SUPT6H chr17:27017247 5'GT 27017247 Upstream 79bp
chr6 13574807 13574807 1 + C A rs561015899 13574803 + 13574783 13574823 41 ACAGAGAGCTGGGAGGGAGGCACCCCGGGGGGCGGGGCGTG ACAGAGAGCTGGGAGGGAGGCACCACGGGGGGCGGGGCGTG < 41bp 0.681575761378318 0.916985126015812 0.6910994 0.86293983 prediction 0.470818729274987 Functional Gain - SIRT5 ENSG00000124523 upstream Human protein_coding chr6:13574803 chr6:13574807 . . 0 25 hm5C_associated_SNPs_112967 0 0 1 0 1 SIRT5 chr6:13574856 5'GT 13574856 Upstream 50bp
chr20 43034856 43034856 1 + C A LUAD 43034855 + 43034835 43034875 41 CGGAGGAGCGTGCGGAAGAACCACATGTACTCCTGCAGGTG CGGAGGAGCGTGCGGAAGAACAACATGTACTCCTGCAGGTG < 41bp 0.476949747902848 0.73539523159069 0.42498806 0.3346498 prediction 0.47079046318138 Functional Gain - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43034855 chr20:43034856 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112969 0 0 1 0 1 HNF4A chr20:43034872 5'GT 43034872 Upstream 17bp
chr12 58014231 58014231 1 + C A LUAD 58014230 + 58014210 58014250 41 AGGTACTGGGAGACACCTGTCCACAGGTGAGTGACCAGGGA AGGTACTGGGAGACACCTGTCAACAGGTGAGTGACCAGGGA < 41bp 0.481770414159123 0.735380664794079 0.6254723 0.4665838 prediction 0.470761329588158 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58014230 chr12:58014231 synonymous SNV . 0 22 hm5C_associated_SNPs_112972 0 0 0 0 1 SLC26A10 chr12:58014235 5'GT 58014235 Upstream 5bp
chr5 82789520 82789520 1 + C A LUSC 82789516 + 82789496 82789536 41 TTTGAGCAGTGTGACGCAGGCTGGCTGGCTGATCAGACTGT TTTGAGCAGTGTGACGCAGGCTGGATGGCTGATCAGACTGT < 41bp 0.341768503718838 0.735374686161807 0.06830114 0.3963818 prediction 0.470749372323614 Functional Gain - VCAN ENSG00000038427 CDS Human protein_coding chr5:82789516 chr5:82789520 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_112976 0 0 1 0 1 VCAN chr5:82789539 5'GT 82789539 Upstream 20bp
chr9 129154437 129154437 1 + C T STAD 129154436 + 129154416 129154456 41 TGTGACATTCGGATCATGGGCCGGACCAAGCAGGCCCCGCC TGTGACATTCGGATCATGGGCTGGACCAAGCAGGCCCCGCC < 41bp 0.480801907877434 0.735373004283264 0.87117934 0.7183741 prediction 0.470746008566527 Functional Gain - MVB12B ENSG00000196814 CDS Human protein_coding chr9:129154436 chr9:129154437 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112977 0 0 1 0 2 MVB12B chr9:129154345 3'AG 129154345 Downstream 93bp
chr9 129154437 129154437 1 + C T STAD 129154436 + 129154416 129154456 41 TGTGACATTCGGATCATGGGCCGGACCAAGCAGGCCCCGCC TGTGACATTCGGATCATGGGCTGGACCAAGCAGGCCCCGCC < 41bp 0.480801907877434 0.735373004283264 0.87117934 0.7183741 prediction 0.470746008566527 Functional Gain - MVB12B ENSG00000196814 CDS Human protein_coding chr9:129154436 chr9:129154437 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112977 0 0 1 0 2 MVB12B chr9:129154474 5'GT 129154474 Upstream 38bp
chr5 128302295 128302295 1 + C T SKCM 128302294 + 128302274 128302314 41 CCGCGCCTGTGGGCCCAGAGCCCTAGTGGTGGGCGCAGGTA CCGCGCCTGTGGGCCCAGAGCTCTAGTGGTGGGCGCAGGTA < 41bp 0.534545986353635 0.769914581360677 0.074527144 0.57157356 prediction 0.470737190014084 Functional Gain - SLC27A6 ENSG00000113396 CDS Human protein_coding chr5:128302294 chr5:128302295 synonymous SNV . 0 22 hm5C_associated_SNPs_112978 0 0 0 0 1 SLC27A6 chr5:128302311 5'GT 128302311 Upstream 17bp
chr19 41725377 41725377 1 + C A UCEC 41725376 + 41725356 41725396 41 GCGGCTGGGCGTGCATGGCCCCCAGGGGTGAGTGATGGGGG GCGGCTGGGCGTGCATGGCCCACAGGGGTGAGTGATGGGGG < 41bp 0.537693214111429 0.773054376874892 0.011133432 0.049827248 prediction 0.470722325526926 Functional Gain - AXL ENSG00000167601 CDS Human protein_coding chr19:41725376 chr19:41725377 nonsynonymous SNV 0.024 0 22 hm5C_associated_SNPs_112983 0 0 1 0 1 AXL chr19:41725382 5'GT 41725382 Upstream 6bp
chr6 33173243 33173243 1 + A G UCEC 33173240 + 33173220 33173260 41 CCAGGGCACCTTCCTAGTCACTCAGGCTGCAGCACAAGCCC CCAGGGCACCTTCCTAGTCACTCGGGCTGCAGCACAAGCCC < 41bp 0.531676054264557 0.767036520267318 0.01981908 0.05867678 prediction 0.470720932005523 Functional Gain - HSD17B8 ENSG00000204228 CDS Human protein_coding chr6:33173240 chr6:33173243 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_112984 0 0 1 0 2 HSD17B8 chr6:33173224 3'AG 33173224 Downstream 20bp
chr6 33173243 33173243 1 + A G UCEC 33173240 + 33173220 33173260 41 CCAGGGCACCTTCCTAGTCACTCAGGCTGCAGCACAAGCCC CCAGGGCACCTTCCTAGTCACTCGGGCTGCAGCACAAGCCC < 41bp 0.531676054264557 0.767036520267318 0.01981908 0.05867678 prediction 0.470720932005523 Functional Gain - HSD17B8 ENSG00000204228 CDS Human protein_coding chr6:33173240 chr6:33173243 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_112984 0 0 1 0 2 HSD17B8 chr6:33173316 5'GT 33173316 Upstream 74bp
chr19 41597771 41597771 1 + C T SKCM 41597770 + 41597750 41597790 41 GCGCACGCTGGATCCCAATTCCCCACGGGACTTCATCGACT GCGCACGCTGGATCCCAATTCTCCACGGGACTTCATCGACT < 41bp 0.586240398599463 0.821600285607622 0.101670384 0.9552274 prediction 0.47071977401632 Functional Gain - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41597770 chr19:41597771 synonymous SNV . 0 22 hm5C_associated_SNPs_112985 0 0 0 0 1 CYP2A13 chr19:41597813 5'GT 41597813 Upstream 43bp
chr11 62496307 62496307 1 + C A rs144860482 62496306 + 62496286 62496326 41 ACTTCCCAGTTCCGCAAGAACCGTGGGCGACAGTTATGGAG ACTTCCCAGTTCCGCAAGAACAGTGGGCGACAGTTATGGAG < 41bp 0.569075432422121 0.804430955557735 0.78630674 0.60478884 prediction 0.470711046271228 Functional Gain - TTC9C ENSG00000162222 CDS Human protein_coding chr11:62496306 chr11:62496307 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_112988 0 0 0 0 2 TTC9C chr11:62496208 3'AG 62496208 Downstream 100bp
chr11 62496307 62496307 1 + C A rs144860482 62496306 + 62496286 62496326 41 ACTTCCCAGTTCCGCAAGAACCGTGGGCGACAGTTATGGAG ACTTCCCAGTTCCGCAAGAACAGTGGGCGACAGTTATGGAG < 41bp 0.569075432422121 0.804430955557735 0.78630674 0.60478884 prediction 0.470711046271228 Functional Gain - TTC9C ENSG00000162222 CDS Human protein_coding chr11:62496306 chr11:62496307 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_112988 0 0 0 0 2 TTC9C chr11:62496295 3'AG 62496295 Downstream 13bp
chr16 81641248 81641248 1 + C T STAD 81641247 + 81641227 81641267 41 TGCTGTCCTGGGAGAATGCCCCGAAGTACTGTTTACAGCTC TGCTGTCCTGGGAGAATGCCCTGAAGTACTGTTTACAGCTC < 41bp 0.477470371104554 0.735354725427999 0.2652822 0.12087867 prediction 0.470709450855998 Functional Gain - CMIP ENSG00000153815 CDS Human protein_coding chr16:81641247 chr16:81641248 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_112989 0 0 1 0 2 CMIP chr16:81641172 3'AG 81641172 Downstream 77bp
chr16 81641248 81641248 1 + C T STAD 81641247 + 81641227 81641267 41 TGCTGTCCTGGGAGAATGCCCCGAAGTACTGTTTACAGCTC TGCTGTCCTGGGAGAATGCCCTGAAGTACTGTTTACAGCTC < 41bp 0.477470371104554 0.735354725427999 0.2652822 0.12087867 prediction 0.470709450855998 Functional Gain - CMIP ENSG00000153815 CDS Human protein_coding chr16:81641247 chr16:81641248 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_112989 0 0 1 0 2 CMIP chr16:81641297 5'GT 81641297 Upstream 50bp
chr1 74905226 74905226 1 + T G KIRP 74905224 + 74905204 74905244 41 ACGCAGTGCACTCGGTACACCATCAAAGCAGATGTCTTCAG ACGCAGTGCACTCGGTACACCAGCAAAGCAGATGTCTTCAG < 41bp 0.400219748484676 0.735352259118483 0.10034874 0.2221888 prediction 0.470704518236966 Functional Gain - FPGT-TNNI3K;TNNI3K ENSG00000116783;ENSG00000259030 CDS Human other chr1:74905224 chr1:74905226 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_112990 0 0 0 0 2 FPGT-TNNI3K;TNNI3K chr1:74905174 3'AG 74905174 Downstream 53bp
chr1 74905226 74905226 1 + T G KIRP 74905224 + 74905204 74905244 41 ACGCAGTGCACTCGGTACACCATCAAAGCAGATGTCTTCAG ACGCAGTGCACTCGGTACACCAGCAAAGCAGATGTCTTCAG < 41bp 0.400219748484676 0.735352259118483 0.10034874 0.2221888 prediction 0.470704518236966 Functional Gain - FPGT-TNNI3K;TNNI3K ENSG00000116783;ENSG00000259030 CDS Human other chr1:74905224 chr1:74905226 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_112990 0 0 0 0 2 FPGT-TNNI3K;TNNI3K chr1:74905306 5'GT 74905306 Upstream 81bp
chr1 152671415 152671415 1 + C A LUAD 152671411 + 152671391 152671431 41 AAAACCAGCAGCAGTGCCAGCCCCCTCCCAAGTGCCCCCCA AAAACCAGCAGCAGTGCCAGCCCCATCCCAAGTGCCCCCCA < 41bp 0.331116488719447 0.735348363709083 0.062185824 0.11644074 prediction 0.470696727418167 Functional Gain - LCE2A ENSG00000187173 CDS Human protein_coding chr1:152671411 chr1:152671415 nonsynonymous SNV 0.363 2 25 hm5C_associated_SNPs_112992 0 0 0 0 1 LCE2A chr1:152671358 3'AG 152671358 Downstream 58bp
chr6 44122171 44122171 1 + C A LAML 44122170 + 44122150 44122190 41 CCCCCCACTGCTGCTGCTGTCCCCAAATCTGCGGTGAGTGC CCCCCCACTGCTGCTGCTGTCACCAAATCTGCGGTGAGTGC < 41bp 0.475235524316189 0.735344684939064 0.5465164 0.42594582 prediction 0.470689369878129 Functional Gain - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44122170 chr6:44122171 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_112995 0 0 0 0 2 TMEM63B chr6:44122102 3'AG 44122102 Downstream 70bp
chr6 44122171 44122171 1 + C A LAML 44122170 + 44122150 44122190 41 CCCCCCACTGCTGCTGCTGTCCCCAAATCTGCGGTGAGTGC CCCCCCACTGCTGCTGCTGTCACCAAATCTGCGGTGAGTGC < 41bp 0.475235524316189 0.735344684939064 0.5465164 0.42594582 prediction 0.470689369878129 Functional Gain - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44122170 chr6:44122171 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_112995 0 0 0 0 2 TMEM63B chr6:44122182 5'GT 44122182 Upstream 12bp
chr2 242135233 242135233 1 + T C UCEC 242135231 + 242135211 242135251 41 GGGAGACTTTTCTGGATAATCTTCGTGCGGCTGGGCTGTGT GGGAGACTTTTCTGGATAATCTCCGTGCGGCTGGGCTGTGT < 41bp 0.581698100986271 0.817041230110045 0.20972365 0.65055096 prediction 0.470686258247548 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242135231 chr2:242135233 synonymous SNV . 0 23 hm5C_associated_SNPs_112996 0 0 0 0 1 ANO7 chr2:242135260 5'GT 242135260 Upstream 28bp
chr1 154492834 154492834 1 + C T ESCA 154492833 + 154492813 154492853 41 CCTCTTGATGTCCACAAAATCCAGAATGGCTGCAAATGGTA CCTCTTGATGTCCACAAAATCTAGAATGGCTGCAAATGGTA < 41bp 0.53783590604803 0.773174954262011 0.07932946 0.12705937 prediction 0.470678096427963 Functional Gain - TDRD10 ENSG00000163239 CDS Human protein_coding chr1:154492833 chr1:154492834 stopgain 0.002 0 22 hm5C_associated_SNPs_112998 0 0 0 0 2 TDRD10 chr1:154492780 3'AG 154492780 Downstream 55bp
chr1 154492834 154492834 1 + C T ESCA 154492833 + 154492813 154492853 41 CCTCTTGATGTCCACAAAATCCAGAATGGCTGCAAATGGTA CCTCTTGATGTCCACAAAATCTAGAATGGCTGCAAATGGTA < 41bp 0.53783590604803 0.773174954262011 0.07932946 0.12705937 prediction 0.470678096427963 Functional Gain - TDRD10 ENSG00000163239 CDS Human protein_coding chr1:154492833 chr1:154492834 stopgain 0.002 0 22 hm5C_associated_SNPs_112998 0 0 0 0 2 TDRD10 chr1:154492850 5'GT 154492850 Upstream 17bp
chr7 20689757 20689757 1 + C T UCEC 20689756 + 20689736 20689776 41 TTCTGCAGAGGTTATATGATCCGGATGATGGCTTTGTAAGT TTCTGCAGAGGTTATATGATCTGGATGATGGCTTTGTAAGT < 41bp 0.49853660881947 0.735337605954288 0.75216115 0.3718773 prediction 0.470675211908576 Functional Gain - ABCB5 ENSG00000004846 CDS Human protein_coding chr7:20689756 chr7:20689757 nonsynonymous SNV 0.515 4 22 hm5C_associated_SNPs_112999 0 0 0 0 1 ABCB5 chr7:20689770 5'GT 20689770 Upstream 14bp
chr8 86127171 86127171 1 - A C BLCA 86127173 - 86127153 86127193 41 ATTTCGCAAAAAGCATTTCACTTGAACCTCTGCAGAAAGAA ATTTCGCAAAAAGCATTTCACTGGAACCTCTGCAGAAAGAA < 41bp 0.623833961345589 0.85916640720861 0.08494067 0.16790292 prediction 0.470664891726042 Functional Gain - C8orf59 ENSG00000176731 CDS Human protein_coding chr8:86127173 chr8:86127171 synonymous SNV . 0 23 hm5C_associated_SNPs_113001 0 0 1 0 2 C8orf59 chr8:86127150 5'GT 86127150 Upstream 22bp
chr8 86127171 86127171 1 - A C BLCA 86127173 - 86127153 86127193 41 ATTTCGCAAAAAGCATTTCACTTGAACCTCTGCAGAAAGAA ATTTCGCAAAAAGCATTTCACTGGAACCTCTGCAGAAAGAA < 41bp 0.623833961345589 0.85916640720861 0.08494067 0.16790292 prediction 0.470664891726042 Functional Gain - C8orf59 ENSG00000176731 CDS Human protein_coding chr8:86127173 chr8:86127171 synonymous SNV . 0 23 hm5C_associated_SNPs_113001 0 0 1 0 2 C8orf59 chr8:86127266 3'AG 86127266 Downstream 96bp
chr17 2583573 2583573 1 + T C STAD 2583571 + 2583551 2583591 41 GATTACAAGAACAAGCGATGCATGAAGACCCTCAATGCGCA GATTACAAGAACAAGCGATGCACGAAGACCCTCAATGCGCA < 41bp 0.448775879810958 0.73532155949854 0.0610604 0.08762717 prediction 0.47064311899708 Functional Gain - PAFAH1B1 ENSG00000007168 CDS Human protein_coding chr17:2583571 chr17:2583573 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_113006 0 0 1 0 1 PAFAH1B1 chr17:2583614 5'GT 2583614 Upstream 42bp
chr3 38022247 38022247 1 + C A UCEC 38022246 + 38022226 38022266 41 CTTCCAGGTGCCTGTGCAGTCCTGGTTCGATGACATGACGG CTTCCAGGTGCCTGTGCAGTCATGGTTCGATGACATGACGG < 41bp 0.547182236529003 0.782501991207289 0.2856112 0.3009243 prediction 0.470639509356572 Functional Gain - CTDSPL ENSG00000144677 CDS Human protein_coding chr3:38022246 chr3:38022247 synonymous SNV . 0 22 hm5C_associated_SNPs_113007 0 0 1 0 1 CTDSPL chr3:38022233 3'AG 38022233 Downstream 15bp
chr1 156616667 156616667 1 + C A LUAD 156616663 + 156616643 156616683 41 GTGCTCGGCGGCGCCCTCACCATCCCTTGCCACGTCCACTA GTGCTCGGCGGCGCCCTCACCATCACTTGCCACGTCCACTA < 41bp 0.323135100432296 0.735310667325483 0.27100858 0.37074196 prediction 0.470621334650966 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156616663 chr1:156616667 nonsynonymous SNV 0.879 4 25 hm5C_associated_SNPs_113009 0 0 0 0 1 BCAN chr1:156616593 3'AG 156616593 Downstream 75bp
chr17 37872089 37872089 1 + T G BRCA 37872087 + 37872067 37872107 41 GTGGACTGGCCCTCATCCACCATAACACCCACCTCTGCTTC GTGGACTGGCCCTCATCCACCAGAACACCCACCTCTGCTTC < 41bp 0.378556029311759 0.735308854994564 0.12029934 0.27487794 prediction 0.470617709989128 Functional Gain - ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37872087 chr17:37872089 nonsynonymous SNV 0.549 0 23 hm5C_associated_SNPs_113011 0 0 1 0 1 ERBB2 chr17:37871993 3'AG 37871993 Downstream 97bp
chr22 50644857 50644857 1 + C T MESO 50644856 + 50644836 50644876 41 GGCCGGCGCCTGCGTCACGTCCGAGTCCACGGTGGTGCGCG GGCCGGCGCCTGCGTCACGTCTGAGTCCACGGTGGTGCGCG < 41bp 0.530219260060313 0.765527797290042 0.1829417 0.059275597 prediction 0.47061707445946 Functional Gain - SELENOO ENSG00000073169 CDS Human protein_coding chr22:50644856 chr22:50644857 unknown . 0 22 hm5C_associated_SNPs_113012 0 0 1 0 1 SELENOO chr22:50644949 5'GT 50644949 Upstream 93bp
chr9 136891420 136891420 1 + C A rs190723999 136891419 + 136891399 136891439 41 CCGTTGCCCTGAAAGCTGGCCCGGACAGATGCGTGCGGGGC CCGTTGCCCTGAAAGCTGGCCAGGACAGATGCGTGCGGGGC < 41bp 0.568512263829127 0.803809723024168 0.19341844 0.33082438 prediction 0.470594918390082 Functional Gain - LINC00094 ENSG00000235106 ncRNA_exonic Human protein_coding chr9:136891419 chr9:136891420 . . 0 22 hm5C_associated_SNPs_113014 0 0 0 0 1 LINC00094 chr9:136891330 3'AG 136891330 Downstream 91bp
chr11 66260376 66260376 1 + C T SKCM 66260375 + 66260355 66260395 41 TCCCTGCCGGCATCAACATCCCCAACTGTGAGTGTCTCAGG TCCCTGCCGGCATCAACATCCTCAACTGTGAGTGTCTCAGG < 41bp 0.460718688758332 0.735289900490033 0.22530857 0.14202139 prediction 0.470579800980066 Functional Gain - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66260375 chr11:66260376 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_113015 0 0 1 0 1 DPP3 chr11:66260381 5'GT 66260381 Upstream 6bp
chr5 162939023 162939023 1 + C T SKCM 162939022 + 162939002 162939042 41 TTTTAGGAGGAAGTTAACATCCCTAATAGGAGGGTTCTGGT TTTTAGGAGGAAGTTAACATCTCTAATAGGAGGGTTCTGGT < 41bp 0.566971967161772 0.802257976864853 0.15804291 0.93940806 prediction 0.470572019406164 Functional Gain - MAT2B ENSG00000038274 CDS Human protein_coding chr5:162939022 chr5:162939023 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_113018 0 0 1 0 1 MAT2B chr5:162939008 3'AG 162939008 Downstream 16bp
chr14 52782049 52782049 1 + C A LUAD 52782045 + 52782025 52782065 41 GGTGTCCATGGCGGAGGAGACGGACCACCTCATTCTCCTGG GGTGTCCATGGCGGAGGAGACGGAACACCTCATTCTCCTGG < 41bp 0.688272514784033 0.92355273297821 0.7153701 0.65967643 prediction 0.470560436388354 Functional Gain - PTGER2 ENSG00000125384 CDS Human protein_coding chr14:52782045 chr14:52782049 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_113023 0 0 0 0 1 PTGER2 chr14:52782109 5'GT 52782109 Upstream 61bp
chr11 63964802 63964802 1 + C A UCEC 63964798 + 63964778 63964818 41 CAAGAAGAAAGACTTTGACACAGCCTTGAAGCATTACGACA CAAGAAGAAAGACTTTGACACAGCATTGAAGCATTACGACA < 41bp 0.31618583992596 0.735273587487212 0.123654366 0.21166292 prediction 0.470547174974423 Functional Gain - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63964798 chr11:63964802 synonymous SNV . 0 25 hm5C_associated_SNPs_113025 0 0 1 0 2 STIP1 chr11:63964743 3'AG 63964743 Downstream 60bp
chr11 63964802 63964802 1 + C A UCEC 63964798 + 63964778 63964818 41 CAAGAAGAAAGACTTTGACACAGCCTTGAAGCATTACGACA CAAGAAGAAAGACTTTGACACAGCATTGAAGCATTACGACA < 41bp 0.31618583992596 0.735273587487212 0.123654366 0.21166292 prediction 0.470547174974423 Functional Gain - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63964798 chr11:63964802 synonymous SNV . 0 25 hm5C_associated_SNPs_113025 0 0 1 0 2 STIP1 chr11:63964869 5'GT 63964869 Upstream 68bp
chr1 45973097 45973097 1 + C A UCEC 45973096 + 45973076 45973116 41 CCAGGACCTACCCTGGCCTTCCTGGTACTCAGCACGCCTGC CCAGGACCTACCCTGGCCTTCATGGTACTCAGCACGCCTGC < 41bp 0.472495717174156 0.735272895750948 0.20873013 0.3286085 prediction 0.470545791501897 Functional Gain - MMACHC ENSG00000132763 CDS Human protein_coding chr1:45973096 chr1:45973097 nonsynonymous SNV 0.973 3 22 hm5C_associated_SNPs_113027 0 0 0 0 1 MMACHC chr1:45973028 3'AG 45973028 Downstream 70bp
chrX 155235133 155235133 1 + C T SKCM 155235132 + 155235112 155235152 41 AGCCTGTGTGCTTCCAGGCTCCCCAGAGACAAGGTGGGCAC AGCCTGTGTGCTTCCAGGCTCTCCAGAGACAAGGTGGGCAC < 41bp 0.574162131216887 0.80943385640682 0.2764507 0.9370725 prediction 0.470543450379865 Functional Gain - IL9R ENSG00000124334 CDS Human protein_coding chrX:155235132 chrX:155235133 nonsynonymous SNV 0.041 3 22 hm5C_associated_SNPs_113028 0 0 0 0 1 IL9R chrX:155235144 5'GT 155235144 Upstream 12bp
chr1 179317997 179317997 1 + T C UCEC 179317995 + 179317975 179318015 41 TCAGGATTGGTGGAACTCCACGTCATACTCCAACTATTATA TCAGGATTGGTGGAACTCCACGCCATACTCCAACTATTATA < 41bp 0.435873670526259 0.735269075904767 0.011697054 0.07509002 prediction 0.470538151809534 Functional Gain - SOAT1 ENSG00000057252 CDS Human protein_coding chr1:179317995 chr1:179317997 nonsynonymous SNV 0.981 4 23 hm5C_associated_SNPs_113029 0 0 1 0 2 SOAT1 chr1:179317979 3'AG 179317979 Downstream 19bp
chr1 179317997 179317997 1 + T C UCEC 179317995 + 179317975 179318015 41 TCAGGATTGGTGGAACTCCACGTCATACTCCAACTATTATA TCAGGATTGGTGGAACTCCACGCCATACTCCAACTATTATA < 41bp 0.435873670526259 0.735269075904767 0.011697054 0.07509002 prediction 0.470538151809534 Functional Gain - SOAT1 ENSG00000057252 CDS Human protein_coding chr1:179317995 chr1:179317997 nonsynonymous SNV 0.981 4 23 hm5C_associated_SNPs_113029 0 0 1 0 2 SOAT1 chr1:179318077 5'GT 179318077 Upstream 81bp
chr16 28913549 28913549 1 + C T COAD 28913548 + 28913528 28913568 41 GGCTGCCTGAGGCCCTGATCCCGGTGCAGCTGCTATGGGTG GGCTGCCTGAGGCCCTGATCCTGGTGCAGCTGCTATGGGTG < 41bp 0.527472681835456 0.762741357332517 0.8413301 0.8826592 prediction 0.470537350994122 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28913548 chr16:28913549 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_113030 1 0 0 0 1 ATP2A1 chr16:28913505 3'AG 28913505 Downstream 45bp
chr16 72045977 72045977 1 + T C COAD 72045975 + 72045955 72045995 41 GCCCAGGATGCTGTGATCATCCTGGGGGGAGGAGGACTTCT GCCCAGGATGCTGTGATCATCCCGGGGGGAGGAGGACTTCT < 41bp 0.579839087960424 0.815104917567941 0.8677125 0.8732571 prediction 0.470531659215035 Functional Gain - DHODH ENSG00000102967 CDS Human protein_coding chr16:72045975 chr16:72045977 nonsynonymous SNV 0.960 4 23 hm5C_associated_SNPs_113031 0 0 0 0 1 DHODH chr16:72045949 3'AG 72045949 Downstream 29bp
chr1 155110754 155110754 1 + C A LGG 155110753 + 155110733 155110773 41 GAACTACTGGCTCCTGCAAACCTGAGGCTGCTCATCTGACC GAACTACTGGCTCCTGCAAACATGAGGCTGCTCATCTGACC < 41bp 0.554382408735967 0.789646630862611 0.4819858 0.5733403 prediction 0.470528444253288 Functional Gain - SLC50A1 ENSG00000169241 CDS Human protein_coding chr1:155110753 chr1:155110754 synonymous SNV . 0 22 hm5C_associated_SNPs_113032 0 0 1 0 1 SLC50A1 chr1:155110656 3'AG 155110656 Downstream 99bp
chr9 80923441 80923441 1 + C T UCEC 80923440 + 80923420 80923460 41 CTCCGAGAGTGCCCCTCGGTCCTGGAATACAAGGTGCAGGC CTCCGAGAGTGCCCCTCGGTCTTGGAATACAAGGTGCAGGC < 41bp 0.554519549995995 0.789783117314001 0.08641276 0.057329923 prediction 0.470527134636011 Functional Gain - PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80923440 chr9:80923441 synonymous SNV . 0 22 hm5C_associated_SNPs_113033 0 0 1 0 1 PSAT1 chr9:80923499 5'GT 80923499 Upstream 59bp
chr5 81600655 81600655 1 + T G rs539869294 81600652 + 81600632 81600672 41 GACCCTGACAACTCAAATTGCAGTGAAGAAAGTGCTAGGTA GACCCTGACAACTCAAATTGCAGGGAAGAAAGTGCTAGGTA < 41bp 0.466775939129589 0.735263306139918 0.17162922 0.8365644 prediction 0.470526612279837 Functional Gain - ATP6AP1L ENSG00000205464 UTR5 Human protein_coding chr5:81600652 chr5:81600655 . . 0 24 hm5C_associated_SNPs_113034 0 0 1 0 1 ATP6AP1L chr5:81600669 5'GT 81600669 Upstream 15bp
chr2 69015017 69015017 1 + T C UCEC 69015015 + 69014995 69015035 41 GGACAGGACTCCTATGTCCTCATGGCCAGCTCTCAGGCGGA GGACAGGACTCCTATGTCCTCACGGCCAGCTCTCAGGCGGA < 41bp 0.464244881199747 0.735246075191133 0.16544127 0.30977008 prediction 0.470492150382265 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69015015 chr2:69015017 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_113038 0 0 0 1 2 ARHGAP25 chr2:69014972 3'AG 69014972 Downstream 46bp
chr2 69015017 69015017 1 + T C UCEC 69015015 + 69014995 69015035 41 GGACAGGACTCCTATGTCCTCATGGCCAGCTCTCAGGCGGA GGACAGGACTCCTATGTCCTCACGGCCAGCTCTCAGGCGGA < 41bp 0.464244881199747 0.735246075191133 0.16544127 0.30977008 prediction 0.470492150382265 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69015015 chr2:69015017 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_113038 0 0 0 1 2 ARHGAP25 chr2:69015088 5'GT 69015088 Upstream 72bp
chr15 101464887 101464887 1 + C T rs180759486 101464886 + 101464866 101464906 41 GCATGTACTGGTGTGTGGGGCCGGAGGAGTCAGCTGTGTGT GCATGTACTGGTGTGTGGGGCTGGAGGAGTCAGCTGTGTGT < 41bp 0.501192856212715 0.736437883146922 0.9035948 0.84259945 prediction 0.470490053868414 Functional Gain - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101464886 chr15:101464887 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_113039 0 0 0 0 1 LRRK1 chr15:101464934 5'GT 101464934 Upstream 48bp
chr5 42718610 42718610 1 + C T LUSC 42718609 + 42718589 42718629 41 CCATTCATGATAGCTATAAACCCGAATTCCACAGTGATGAC CCATTCATGATAGCTATAAACTCGAATTCCACAGTGATGAC < 41bp 0.499923863001987 0.735233957749836 0.09992677 0.83237255 prediction 0.470467915499672 Functional Gain - GHR ENSG00000112964 CDS Human protein_coding chr5:42718609 chr5:42718610 nonsynonymous SNV 0.962 2 22 hm5C_associated_SNPs_113044 0 0 0 0 1 GHR chr5:42718555 3'AG 42718555 Downstream 56bp
chr6 28053579 28053579 1 + C A PAAD 28053578 + 28053558 28053598 41 CCTGCCAGGAGATTTGCAGGCCTGGGTACATGAACATTACC CCTGCCAGGAGATTTGCAGGCATGGGTACATGAACATTACC < 41bp 0.466887338435435 0.735228269515338 0.31564203 0.4364891 prediction 0.470456539030676 Functional Gain - ZNF165 ENSG00000197279 CDS Human protein_coding chr6:28053578 chr6:28053579 synonymous SNV . 0 22 hm5C_associated_SNPs_113046 0 0 1 0 1 ZNF165 chr6:28053669 5'GT 28053669 Upstream 91bp
chr18 28913591 28913591 1 + C T GBM 28913590 + 28913570 28913610 41 CTTGCTGTAAGAGGCTCTGACCGAGATGGCGGGGCAGATGG CTTGCTGTAAGAGGCTCTGACTGAGATGGCGGGGCAGATGG < 41bp 0.505679838190884 0.740902093983234 0.476264 0.31660897 prediction 0.4704445115847 Functional Gain - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28913590 chr18:28913591 stopgain 0.775 0 22 hm5C_associated_SNPs_113049 1 0 0 0 2 DSG1 chr18:28913552 3'AG 28913552 Downstream 40bp
chr18 28913591 28913591 1 + C T GBM 28913590 + 28913570 28913610 41 CTTGCTGTAAGAGGCTCTGACCGAGATGGCGGGGCAGATGG CTTGCTGTAAGAGGCTCTGACTGAGATGGCGGGGCAGATGG < 41bp 0.505679838190884 0.740902093983234 0.476264 0.31660897 prediction 0.4704445115847 Functional Gain - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28913590 chr18:28913591 stopgain 0.775 0 22 hm5C_associated_SNPs_113049 1 0 0 0 2 DSG1 chr18:28913686 5'GT 28913686 Upstream 96bp
chr22 43523767 43523767 1 + C G rs138352717 43523763 + 43523743 43523783 41 ATGGACGTGAGCCTCAGGGCCCCGCGCCTGGCCCAGCTCTC ATGGACGTGAGCCTCAGGGCCCCGGGCCTGGCCCAGCTCTC < 41bp 0.448952407398512 0.735219315376397 0.34298992 0.5617362 prediction 0.470438630752794 Functional Gain - BIK ENSG00000100290 CDS Human protein_coding chr22:43523763 chr22:43523767 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_113052 0 0 0 0 2 BIK chr22:43523703 3'AG 43523703 Downstream 65bp
chr22 43523767 43523767 1 + C G rs138352717 43523763 + 43523743 43523783 41 ATGGACGTGAGCCTCAGGGCCCCGCGCCTGGCCCAGCTCTC ATGGACGTGAGCCTCAGGGCCCCGGGCCTGGCCCAGCTCTC < 41bp 0.448952407398512 0.735219315376397 0.34298992 0.5617362 prediction 0.470438630752794 Functional Gain - BIK ENSG00000100290 CDS Human protein_coding chr22:43523763 chr22:43523767 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_113052 0 0 0 0 2 BIK chr22:43523801 5'GT 43523801 Upstream 35bp
chrX 133547639 133547639 1 + C T COAD 133547638 + 133547618 133547658 41 TAAAGGGCTGTCAGAAGATACCAGGTCCACATCCTCCCATG TAAAGGGCTGTCAGAAGATACTAGGTCCACATCCTCCCATG < 41bp 0.506018292060121 0.741236599262449 0.880314 0.88250697 prediction 0.470436614404656 Functional Gain - PHF6 ENSG00000156531 CDS Human protein_coding chrX:133547638 chrX:133547639 synonymous SNV . 0 22 hm5C_associated_SNPs_113053 0 0 1 0 1 PHF6 chrX:133547687 5'GT 133547687 Upstream 49bp
chr10 102510501 102510501 1 + C A BLCA 102510500 + 102510480 102510520 41 GTGTGATCGGTGGCTCCAAGCCCAAAGTGGCGACGCCCAAA GTGTGATCGGTGGCTCCAAGCACAAAGTGGCGACGCCCAAA < 41bp 0.474864741695377 0.735214883957538 0.5414134 0.44416994 prediction 0.470429767915077 Functional Gain - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102510500 chr10:102510501 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_113054 0 0 0 0 1 PAX2 chr10:102510451 3'AG 102510451 Downstream 51bp
chr11 120096395 120096395 1 + T A LAML 120096391 + 120096371 120096411 41 ATGTGAAGGTCTTCCGGGCCCTGATCCTGGGGGAGCTGGAG ATGTGAAGGTCTTCCGGGCCCTGAACCTGGGGGAGCTGGAG < 41bp 0.411385199554979 0.735213993854695 0.238428 0.44183046 prediction 0.47042798770939 Functional Gain - OAF ENSG00000184232 CDS Human protein_coding chr11:120096391 chr11:120096395 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_113055 0 0 1 0 1 OAF chr11:120096370 3'AG 120096370 Downstream 26bp
chr5 79372803 79372803 1 + C T SKCM 79372802 + 79372782 79372822 41 ATGATGACAATGATGGTATCCCAGACCTGGTGCCCCCTGGA ATGATGACAATGATGGTATCCTAGACCTGGTGCCCCCTGGA < 41bp 0.478347396931565 0.735209400970738 0.33930457 0.35588658 prediction 0.470418801941476 Functional Gain - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79372802 chr5:79372803 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_113058 0 0 0 0 1 THBS4 chr5:79372871 5'GT 79372871 Upstream 69bp
chr15 45408805 45408805 1 + C G CESC 45408801 + 45408781 45408821 41 GAATTACGCCGCGGAGTACGCGAACGCACTGGAGAAGGGGC GAATTACGCCGCGGAGTACGCGAAGGCACTGGAGAAGGGGC < 41bp 0.43495899798216 0.735208243588787 0.71603394 0.81569993 prediction 0.470416487177574 Functional Gain - DUOXA2 ENSG00000140274 CDS Human protein_coding chr15:45408801 chr15:45408805 nonsynonymous SNV 0.031 0 25 hm5C_associated_SNPs_113060 0 0 0 0 1 DUOXA2 chr15:45408714 3'AG 45408714 Downstream 92bp
chrX 49093692 49093692 1 + C T LGG 49093691 + 49093671 49093711 41 CTGCCTCTTGCCATGTCTGCCCGGTTCCGCCTGGCCATGAG CTGCCTCTTGCCATGTCTGCCTGGTTCCGCCTGGCCATGAG < 41bp 0.503848039894641 0.739053333210278 0.28338522 0.35788953 prediction 0.470410586631273 Functional Gain - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49093691 chrX:49093692 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_113061 0 0 1 0 1 CCDC22 chrX:49093730 5'GT 49093730 Upstream 39bp
chr1 55282743 55282743 1 + C T SKCM 55282742 + 55282722 55282762 41 CAGCGATATCGATCCCTATTCCTGAGTGGATCCAAACGCTA CAGCGATATCGATCCCTATTCTTGAGTGGATCCAAACGCTA < 41bp 0.552440506592002 0.787642425586126 0.17781046 0.12638232 prediction 0.470403837988248 Functional Gain - LEXM ENSG00000162398 CDS Human protein_coding chr1:55282742 chr1:55282743 synonymous SNV . 0 22 hm5C_associated_SNPs_113062 0 0 0 0 2 LEXM chr1:55282662 3'AG 55282662 Downstream 82bp
chr1 55282743 55282743 1 + C T SKCM 55282742 + 55282722 55282762 41 CAGCGATATCGATCCCTATTCCTGAGTGGATCCAAACGCTA CAGCGATATCGATCCCTATTCTTGAGTGGATCCAAACGCTA < 41bp 0.552440506592002 0.787642425586126 0.17781046 0.12638232 prediction 0.470403837988248 Functional Gain - LEXM ENSG00000162398 CDS Human protein_coding chr1:55282742 chr1:55282743 synonymous SNV . 0 22 hm5C_associated_SNPs_113062 0 0 0 0 2 LEXM chr1:55282795 5'GT 55282795 Upstream 53bp
chr15 25475879 25475879 1 + C A HNSC 25475875 + 25475855 25475895 41 GTGTCCATCAGCCAGGTGCTCAGCCCCAGTGCACTGAAGCT GTGTCCATCAGCCAGGTGCTCAGCACCAGTGCACTGAAGCT < 41bp 0.384691177830635 0.735199391853437 0.76649153 0.81313777 prediction 0.470398783706873 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25475875 chr15:25475879 . . 0 25 hm5C_associated_SNPs_113063 0 0 0 0 2 SNHG14 chr15:25475817 3'AG 25475817 Downstream 63bp
chr15 25475879 25475879 1 + C A HNSC 25475875 + 25475855 25475895 41 GTGTCCATCAGCCAGGTGCTCAGCCCCAGTGCACTGAAGCT GTGTCCATCAGCCAGGTGCTCAGCACCAGTGCACTGAAGCT < 41bp 0.384691177830635 0.735199391853437 0.76649153 0.81313777 prediction 0.470398783706873 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25475875 chr15:25475879 . . 0 25 hm5C_associated_SNPs_113063 0 0 0 0 2 SNHG14 chr15:25475928 5'GT 25475928 Upstream 50bp
chr19 17988671 17988671 1 + C A CESC 17988667 + 17988647 17988687 41 TGCCGCACAGAGAAGCAGGCCAAGCTGTGAGTGTTTCGGGG TGCCGCACAGAGAAGCAGGCCAAGATGTGAGTGTTTCGGGG < 41bp 0.319305815715364 0.73519765168451 0.21186623 0.38459337 prediction 0.470395303369019 Functional Gain - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17988667 chr19:17988671 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_113064 0 0 0 0 1 SLC5A5 chr19:17988672 5'GT 17988672 Upstream 2bp
chr7 138946438 138946438 1 + C A UCEC 138946434 + 138946414 138946454 41 TGCCCAAAGTGGTACCTACACTCCCAGAGGGTCTACCTGTA TGCCCAAAGTGGTACCTACACTCCAAGAGGGTCTACCTGTA < 41bp 0.302299227893705 0.735195765521232 0.066471756 0.9571989 prediction 0.470391531042464 Functional Gain - UBN2 ENSG00000157741 CDS Human protein_coding chr7:138946434 chr7:138946438 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_113065 0 0 1 0 1 UBN2 chr7:138946487 5'GT 138946487 Upstream 50bp
chr1 1216664 1216664 1 + A G UCEC 1216661 + 1216641 1216681 41 GTTACCTGTGGCCCGGCCACCTCAGCGGCCCAAGGAGGTGA GTTACCTGTGGCCCGGCCACCTCGGCGGCCCAAGGAGGTGA < 41bp 0.531916008645738 0.767109725201825 0.13741261 0.30137205 prediction 0.470387433112174 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1216661 chr1:1216664 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_113066 0 0 0 0 2 SCNN1D chr1:1216606 3'AG 1216606 Downstream 59bp
chr1 1216664 1216664 1 + A G UCEC 1216661 + 1216641 1216681 41 GTTACCTGTGGCCCGGCCACCTCAGCGGCCCAAGGAGGTGA GTTACCTGTGGCCCGGCCACCTCGGCGGCCCAAGGAGGTGA < 41bp 0.531916008645738 0.767109725201825 0.13741261 0.30137205 prediction 0.470387433112174 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1216661 chr1:1216664 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_113066 0 0 0 0 2 SCNN1D chr1:1216677 5'GT 1216677 Upstream 14bp
chrX 47038822 47038822 1 + C T BLCA 47038821 + 47038801 47038841 41 CTTCCCCTGCCGCAGCCCTACCAGGCCCAGGGAGTCCTGGC CTTCCCCTGCCGCAGCCCTACTAGGCCCAGGGAGTCCTGGC < 41bp 0.526932401481883 0.762107479544972 0.2603628 0.24860558 prediction 0.470350156126178 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47038821 chrX:47038822 stopgain 1.000 1 22 hm5C_associated_SNPs_113070 0 0 1 0 1 RBM10 chrX:47038894 5'GT 47038894 Upstream 73bp
chr19 13058999 13058999 1 + C A BLCA 13058998 + 13058978 13059018 41 CTTGCTGTTGCAGACCAAAGCCGGCCAGGGTACCTCAGCAC CTTGCTGTTGCAGACCAAAGCAGGCCAGGGTACCTCAGCAC < 41bp 0.563149846036595 0.798322254730271 0.8475419 0.9184632 prediction 0.470344817387351 Functional Gain - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13058998 chr19:13058999 synonymous SNV . 0 22 hm5C_associated_SNPs_113072 0 0 1 0 1 RAD23A chr19:13058991 3'AG 13058991 Downstream 9bp
chr8 134225204 134225204 1 + C T STAD 134225203 + 134225183 134225223 41 GCAAGTGGCCATGTGAGTGCCCGCCATCCCCACCCCGCTGC GCAAGTGGCCATGTGAGTGCCTGCCATCCCCACCCCGCTGC < 41bp 0.513240277854433 0.7484048518823 0.1462076 0.08773884 prediction 0.470329148055735 Functional Gain - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134225203 chr8:134225204 nonsynonymous SNV 0.534 3 22 hm5C_associated_SNPs_113073 0 0 0 0 1 WISP1 chr8:134225107 3'AG 134225107 Downstream 98bp
chr19 57746710 57746710 1 + C T SKCM 57746709 + 57746689 57746729 41 CTTGGAGAGACTGCCCCTGGCCCAGATCCTGAAGCACCCCT CTTGGAGAGACTGCCCCTGGCTCAGATCCTGAAGCACCCCT < 41bp 0.520782749043396 0.75594470356469 0.19301361 0.19669592 prediction 0.470323909042588 Functional Gain - AURKC ENSG00000105146 CDS Human protein_coding chr19:57746709 chr19:57746710 synonymous SNV . 0 22 hm5C_associated_SNPs_113075 0 0 0 0 1 AURKC chr19:57746615 3'AG 57746615 Downstream 96bp
chr17 19445740 19445740 1 + T C UCEC 19445738 + 19445718 19445758 41 CTGATGGTGTTCCTGATCAGCTTCATAAGCTCCGTGTTCTG CTGATGGTGTTCCTGATCAGCTCCATAAGCTCCGTGTTCTG < 41bp 0.455060282835813 0.735159319300891 0.16304597 0.9273521 prediction 0.470318638601782 Functional Gain - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19445738 chr17:19445740 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_113076 0 0 1 2 2 SLC47A1 chr17:19445706 3'AG 19445706 Downstream 35bp
chr17 19445740 19445740 1 + T C UCEC 19445738 + 19445718 19445758 41 CTGATGGTGTTCCTGATCAGCTTCATAAGCTCCGTGTTCTG CTGATGGTGTTCCTGATCAGCTCCATAAGCTCCGTGTTCTG < 41bp 0.455060282835813 0.735159319300891 0.16304597 0.9273521 prediction 0.470318638601782 Functional Gain - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19445738 chr17:19445740 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_113076 0 0 1 2 2 SLC47A1 chr17:19445807 5'GT 19445807 Upstream 68bp
chr12 58114630 58114630 1 + C T STAD 58114629 + 58114609 58114649 41 AAAGAGCTGGAGAGCAATTACCGCCGGGTGTGGGGCTCTCC AAAGAGCTGGAGAGCAATTACTGCCGGGTGTGGGGCTCTCC < 41bp 0.492575099036761 0.735141841175004 0.8677652 0.84624445 prediction 0.470283682350008 Functional Gain - OS9 ENSG00000135506 CDS Human protein_coding chr12:58114629 chr12:58114630 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_113079 0 0 1 0 1 OS9 chr12:58114567 3'AG 58114567 Downstream 64bp
chr2 231174740 231174740 1 + T A LUAD 231174736 + 231174716 231174756 41 CCATGAGGACTGTCACATCCCGCCTGTGGAAGCTGAGAGGT CCATGAGGACTGTCACATCCCGCCAGTGGAAGCTGAGAGGT < 41bp 0.653157143856821 0.888284612314209 0.064829886 0.25623572 prediction 0.470254936914777 Functional Gain - SP140 ENSG00000079263 CDS Human protein_coding chr2:231174736 chr2:231174740 synonymous SNV . 0 25 hm5C_associated_SNPs_113083 0 0 0 0 1 SP140 chr2:231174754 5'GT 231174754 Upstream 15bp
chr13 28840917 28840917 1 + C A LIHC 28840916 + 28840896 28840936 41 GAACCACTGCCACCTCCCAACCGGATACAGAAATCAAGTAA GAACCACTGCCACCTCCCAACAGGATACAGAAATCAAGTAA < 41bp 0.559497290721243 0.794624641513843 0.18352339 0.1500949 prediction 0.4702547015852 Functional Gain - PAN3 ENSG00000152520 CDS Human protein_coding chr13:28840916 chr13:28840917 synonymous SNV . 0 22 hm5C_associated_SNPs_113084 0 0 1 0 2 PAN3 chr13:28840852 3'AG 28840852 Downstream 66bp
chr13 28840917 28840917 1 + C A LIHC 28840916 + 28840896 28840936 41 GAACCACTGCCACCTCCCAACCGGATACAGAAATCAAGTAA GAACCACTGCCACCTCCCAACAGGATACAGAAATCAAGTAA < 41bp 0.559497290721243 0.794624641513843 0.18352339 0.1500949 prediction 0.4702547015852 Functional Gain - PAN3 ENSG00000152520 CDS Human protein_coding chr13:28840916 chr13:28840917 synonymous SNV . 0 22 hm5C_associated_SNPs_113084 0 0 1 0 2 PAN3 chr13:28841013 5'GT 28841013 Upstream 97bp
chr20 18523754 18523754 1 + C T SKCM 18523753 + 18523733 18523773 41 ATGGCACGGCTTGGGGTGTTCCGAGCGGAGTCAGAGGAGGG ATGGCACGGCTTGGGGTGTTCTGAGCGGAGTCAGAGGAGGG < 41bp 0.541401081622519 0.776520231465839 0.7587556 0.7781075 prediction 0.470238299686639 Functional Gain - SEC23B ENSG00000101310 CDS Human protein_coding chr20:18523753 chr20:18523754 stopgain 0.917 1 22 hm5C_associated_SNPs_113086 0 0 1 0 2 SEC23B chr20:18523663 3'AG 18523663 Downstream 92bp
chr20 18523754 18523754 1 + C T SKCM 18523753 + 18523733 18523773 41 ATGGCACGGCTTGGGGTGTTCCGAGCGGAGTCAGAGGAGGG ATGGCACGGCTTGGGGTGTTCTGAGCGGAGTCAGAGGAGGG < 41bp 0.541401081622519 0.776520231465839 0.7587556 0.7781075 prediction 0.470238299686639 Functional Gain - SEC23B ENSG00000101310 CDS Human protein_coding chr20:18523753 chr20:18523754 stopgain 0.917 1 22 hm5C_associated_SNPs_113086 0 0 1 0 2 SEC23B chr20:18523816 5'GT 18523816 Upstream 63bp
chr13 114202624 114202624 1 + C T SKCM 114202623 + 114202603 114202643 41 GAACCGCTCTTGCAGTTTCTCCTGGCGGCGCTGGTCCTGTC GAACCGCTCTTGCAGTTTCTCTTGGCGGCGCTGGTCCTGTC < 41bp 0.530048628176924 0.765158255420658 0.34710014 0.09779802 prediction 0.470219254487467 Functional Gain - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114202623 chr13:114202624 synonymous SNV . 0 22 hm5C_associated_SNPs_113090 0 0 0 0 1 TMCO3 chr13:114202618 3'AG 114202618 Downstream 7bp
chr1 156845314 156845314 1 + C A LUSC 156845313 + 156845293 156845333 41 GGCTGTGTCTCCTCTCTAGGCCCGGCTGTGCTGGCTCCAGA GGCTGTGTCTCCTCTCTAGGCACGGCTGTGCTGGCTCCAGA < 41bp 0.55662071394089 0.791719964822081 0.8865416 0.9337543 prediction 0.470198501762383 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845313 chr1:156845314 nonsynonymous SNV 0.419 1 22 hm5C_associated_SNPs_113094 0 0 1 0 1 NTRK1 chr1:156845312 3'AG 156845312 Downstream 3bp
chr19 49641534 49641534 1 + C A rs45503497 49641530 + 49641510 49641550 41 GGAGAGTCGGGTGTCCAGCTCTGGCTTGGACTCGTTGGGCC GGAGAGTCGGGTGTCCAGCTCTGGATTGGACTCGTTGGGCC < 41bp 0.694766767600177 0.929865835233529 0.79320896 0.87709963 prediction 0.470198135266705 Functional Gain - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49641530 chr19:49641534 synonymous SNV . 0 25 hm5C_associated_SNPs_113095 0 0 0 0 1 PPFIA3 chr19:49641462 3'AG 49641462 Downstream 73bp
chr12 120741790 120741790 1 + C T LUAD 120741789 + 120741769 120741809 41 AAAGCTGTACTGGTTGGTGACCCAAAATGTGGATGCTTTGC AAAGCTGTACTGGTTGGTGACTCAAAATGTGGATGCTTTGC < 41bp 0.472245273821335 0.735096855935869 0.24155825 0.89003 prediction 0.470193711871738 Functional Gain - SIRT4 ENSG00000089163 CDS Human protein_coding chr12:120741789 chr12:120741790 synonymous SNV . 0 22 hm5C_associated_SNPs_113099 0 0 0 0 1 SIRT4 chr12:120741861 5'GT 120741861 Upstream 72bp
chrX 48687553 48687553 1 + C A UCEC 48687552 + 48687532 48687572 41 TCATGGAGCTGCCAACAAAGCCTGGCACCTTCGACCTGGGC TCATGGAGCTGCCAACAAAGCATGGCACCTTCGACCTGGGC < 41bp 0.478612082185458 0.735091894588216 0.23555318 0.32834986 prediction 0.470183789176431 Functional Gain - ERAS ENSG00000187682 CDS Human protein_coding chrX:48687552 chrX:48687553 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_113100 0 0 0 0 1 ERAS chrX:48687491 3'AG 48687491 Downstream 63bp
chr17 34432656 34432656 1 + C A UCEC 34432655 + 34432635 34432675 41 GCAAGCAAGTCTGTGCTGATCCCAGTGAATCCTGGGTCCAG GCAAGCAAGTCTGTGCTGATCACAGTGAATCCTGGGTCCAG < 41bp 0.549720156688218 0.784809839686754 0.3325649 0.40608835 prediction 0.470179365997073 Functional Gain - CCL4 ENSG00000129277 CDS Human other chr17:34432655 chr17:34432656 nonsynonymous SNV 0.282 2 22 hm5C_associated_SNPs_113101 0 0 0 0 1 CCL4 chr17:34432618 3'AG 34432618 Downstream 39bp
chr2 218999541 218999541 1 + T C COAD 218999539 + 218999519 218999559 41 TCAAAAATGGAAGATTTTAACATGGAGAGTGACAGCTTTGA TCAAAAATGGAAGATTTTAACACGGAGAGTGACAGCTTTGA < 41bp 0.508764051855784 0.743843309448806 0.19879055 0.37288618 prediction 0.470158515186045 Functional Gain - CXCR2 ENSG00000180871 CDS Human protein_coding chr2:218999539 chr2:218999541 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_113102 0 0 0 0 1 CXCR2 chr2:218999500 3'AG 218999500 Downstream 42bp
chr7 141351345 141351345 1 + C T UCEC 141351344 + 141351324 141351364 41 GAAGTCGAAAGGTGAGAAACCCCAAGCTGCACGTGGAGGGC GAAGTCGAAAGGTGAGAAACCTCAAGCTGCACGTGGAGGGC < 41bp 0.566991784250025 0.802059804418539 0.31860137 0.21043107 prediction 0.470136040337027 Functional Gain - AGK ENSG00000006530 CDS Human protein_coding chr7:141351344 chr7:141351345 nonsynonymous SNV 0.547 1 22 hm5C_associated_SNPs_113106 0 0 1 0 1 AGK chr7:141351325 3'AG 141351325 Downstream 21bp
chr10 23248457 23248457 1 + C A rs150310367 23248456 + 23248436 23248476 41 GACTACTGAGTAGCCCTGACCCGGATGTAAAGAAGAACTCT GACTACTGAGTAGCCCTGACCAGGATGTAAAGAAGAACTCT < 41bp 0.547102500778753 0.78216273214033 0.4009118 0.7506858 prediction 0.470120462723154 Functional Gain - ARMC3 ENSG00000165309 CDS Human protein_coding chr10:23248456 chr10:23248457 nonsynonymous SNV 0.385 4 22 hm5C_associated_SNPs_113110 0 0 1 0 1 ARMC3 chr10:23248503 5'GT 23248503 Upstream 47bp
chr12 8994020 8994020 1 + T A LIHC 8994016 + 8993996 8994036 41 TCAAGAACCATCTAGTGTTTCTGGTGATTTATGGCACAAAT TCAAGAACCATCTAGTGTTTCTGGAGATTTATGGCACAAAT < 41bp 0.411285149811207 0.735042170516487 0.23374015 0.07746151 prediction 0.470084341032974 Functional Gain - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:8994016 chr12:8994020 nonsynonymous SNV 0.975 1 25 hm5C_associated_SNPs_113113 0 0 0 0 1 A2ML1 chr12:8993965 3'AG 8993965 Downstream 56bp
chr1 246929405 246929405 1 + T C COAD 246929403 + 246929383 246929423 41 ATAGCTATGGTTCAGGCAGCCATGACTCTTCTAAGTGATGC ATAGCTATGGTTCAGGCAGCCACGACTCTTCTAAGTGATGC < 41bp 0.592551178088756 0.827586840629157 0.070902914 0.056219727 prediction 0.470071325080802 Functional Gain - SCCPDH ENSG00000143653 CDS Human protein_coding chr1:246929403 chr1:246929405 nonsynonymous SNV 0.948 0 23 hm5C_associated_SNPs_113118 0 0 1 0 2 SCCPDH chr1:246929360 3'AG 246929360 Downstream 46bp
chr1 246929405 246929405 1 + T C COAD 246929403 + 246929383 246929423 41 ATAGCTATGGTTCAGGCAGCCATGACTCTTCTAAGTGATGC ATAGCTATGGTTCAGGCAGCCACGACTCTTCTAAGTGATGC < 41bp 0.592551178088756 0.827586840629157 0.070902914 0.056219727 prediction 0.470071325080802 Functional Gain - SCCPDH ENSG00000143653 CDS Human protein_coding chr1:246929403 chr1:246929405 nonsynonymous SNV 0.948 0 23 hm5C_associated_SNPs_113118 0 0 1 0 2 SCCPDH chr1:246929441 5'GT 246929441 Upstream 37bp
chr11 124748513 124748513 1 + T C LUSC 124748511 + 124748491 124748531 41 AGGAGTGGTGCCCGCCAATGCCTGAGAGAAGTCACCTGACG AGGAGTGGTGCCCGCCAATGCCCGAGAGAAGTCACCTGACG < 41bp 0.467041493777689 0.735030804075399 0.1603401 0.19113424 prediction 0.470061608150799 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124748511 chr11:124748513 synonymous SNV . 0 23 hm5C_associated_SNPs_113119 0 0 0 0 1 ROBO3 chr11:124748480 3'AG 124748480 Downstream 34bp
chr1 156900379 156900379 1 + A G rs112139912 156900376 + 156900356 156900396 41 AAAGGGATCAAGATCGGGAGCAGAGAGAAGCGCAGCATCCT AAAGGGATCAAGATCGGGAGCAGGGAGAAGCGCAGCATCCT < 41bp 0.529742905958083 0.764768574771865 0.72301936 0.9203005 prediction 0.470051337627565 Functional Gain - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156900376 chr1:156900379 synonymous SNV . 0 24 hm5C_associated_SNPs_113120 0 0 0 0 2 LRRC71 chr1:156900321 3'AG 156900321 Downstream 59bp
chr1 156900379 156900379 1 + A G rs112139912 156900376 + 156900356 156900396 41 AAAGGGATCAAGATCGGGAGCAGAGAGAAGCGCAGCATCCT AAAGGGATCAAGATCGGGAGCAGGGAGAAGCGCAGCATCCT < 41bp 0.529742905958083 0.764768574771865 0.72301936 0.9203005 prediction 0.470051337627565 Functional Gain - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156900376 chr1:156900379 synonymous SNV . 0 24 hm5C_associated_SNPs_113120 0 0 0 0 2 LRRC71 chr1:156900409 5'GT 156900409 Upstream 31bp
chr19 7591755 7591755 1 + C T BLCA 7591754 + 7591734 7591774 41 CTCTGCCAGCGGTACTACCACCGAGGCCACGTGGACCCGGC CTCTGCCAGCGGTACTACCACTGAGGCCACGTGGACCCGGC < 41bp 0.537594828749002 0.772615947247118 0.38723063 0.20034385 prediction 0.470042236996231 Functional Gain - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7591754 chr19:7591755 stopgain 0.430 0 22 hm5C_associated_SNPs_113123 1 0 1 0 1 MCOLN1 chr19:7591812 5'GT 7591812 Upstream 58bp
chr8 39525680 39525680 1 + C A rs553132086 39525676 + 39525656 39525696 41 ATTGCTATAACGGACAATGTCAAACTACTGATAACCAGTGT ATTGCTATAACGGACAATGTCAAAATACTGATAACCAGTGT < 41bp 0.32495936723903 0.735011965306286 0.33661532 0.24829623 prediction 0.470023930612572 Functional Gain - ADAM18 ENSG00000168619 CDS Human protein_coding chr8:39525676 chr8:39525680 nonsynonymous SNV 0.790 0 25 hm5C_associated_SNPs_113124 0 0 0 2 1 ADAM18 chr8:39525715 5'GT 39525715 Upstream 36bp
chr17 38497847 38497847 1 + C A rs542057035 38497843 + 38497823 38497863 41 GAGCCCCGCGGGCGGGCTGGCGAGCGGGTGATGTCACGGGC GAGCCCCGCGGGCGGGCTGGCGAGAGGGTGATGTCACGGGC < 41bp 0.663880484519189 0.898889867172915 0.86615765 0.905365 prediction 0.470018765307453 Functional Gain - RARA-AS1 ENSG00000131759 CDS Human protein_coding chr17:38497843 chr17:38497847 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_113127 0 0 1 0 1 RARA-AS1 chr17:38497867 5'GT 38497867 Upstream 21bp
chr11 57457548 57457548 1 + C T UCEC 57457547 + 57457527 57457567 41 GTGAATAACTGTATTGGTCGCCGGAACTACCGTTATTTTTT GTGAATAACTGTATTGGTCGCTGGAACTACCGTTATTTTTT < 41bp 0.489012398250459 0.735001107167127 0.60596603 0.4688841 prediction 0.470002214334254 Functional Gain - ZDHHC5 ENSG00000156599 CDS Human protein_coding chr11:57457547 chr11:57457548 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_113129 0 0 1 0 1 ZDHHC5 chr11:57457503 3'AG 57457503 Downstream 46bp
chr16 5008386 5008386 1 + C A rs535626612 5008382 + 5008362 5008402 41 TCCGGCCTTCCACAGCTGTCCTGGCCGCAGGGTGTTCAAGG TCCGGCCTTCCACAGCTGTCCTGGACGCAGGGTGTTCAAGG < 41bp 0.392040391255071 0.734996604142069 0.43830302 0.5700716 prediction 0.469993208284137 Functional Gain - SEC14L5 ENSG00000103184 UTR5 Human protein_coding chr16:5008382 chr16:5008386 . . 0 25 hm5C_associated_SNPs_113130 0 0 0 0 1 SEC14L5 chr16:5008446 5'GT 5008446 Upstream 61bp
chr9 137704486 137704486 1 + C T LGG 137704485 + 137704465 137704505 41 CCCTGGCCCCCGAGGACCCTCCGGAGCTCCAGGTGCTGATG CCCTGGCCCCCGAGGACCCTCTGGAGCTCCAGGTGCTGATG < 41bp 0.526080313455306 0.761074196082284 0.9096161 0.85635 prediction 0.469987765253956 Functional Gain - COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137704485 chr9:137704486 synonymous SNV . 0 22 hm5C_associated_SNPs_113131 0 0 0 0 2 COL5A1 chr9:137704451 3'AG 137704451 Downstream 36bp
chr9 137704486 137704486 1 + C T LGG 137704485 + 137704465 137704505 41 CCCTGGCCCCCGAGGACCCTCCGGAGCTCCAGGTGCTGATG CCCTGGCCCCCGAGGACCCTCTGGAGCTCCAGGTGCTGATG < 41bp 0.526080313455306 0.761074196082284 0.9096161 0.85635 prediction 0.469987765253956 Functional Gain - COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137704485 chr9:137704486 synonymous SNV . 0 22 hm5C_associated_SNPs_113131 0 0 0 0 2 COL5A1 chr9:137704558 5'GT 137704558 Upstream 73bp
chr15 83316633 83316633 1 - G C rs587625528 83316634 - 83316614 83316654 41 AGCCCGTCAGCCCCGCAGGGCCACACCGGCCCCATGGCGTT AGCCCGTCAGCCCCGCAGGGCGACACCGGCCCCATGGCGTT < 41bp 0.448659204011713 0.734992025880711 0.12337458 0.26225895 prediction 0.469984051761423 Functional Gain - CPEB1-AS1 ENSG00000259462 ncRNA_exonic Human protein_coding chr15:83316634 chr15:83316633 . . 0 22 hm5C_associated_SNPs_113132 0 0 0 0 1 CPEB1 chr15:83316607 5'GT 83316607 Upstream 27bp
chr1 91967324 91967324 1 + C G LUAD 91967320 + 91967300 91967340 41 GGATGAGCCAATGGCTTTTTCTCCCCAGCGTGACCGGTTTC GGATGAGCCAATGGCTTTTTCTCCGCAGCGTGACCGGTTTC < 41bp 0.613846223000322 0.848837278050724 0.13536099 0.2596345 prediction 0.469982110100804 Functional Gain - CDC7 ENSG00000097046 CDS Human protein_coding chr1:91967320 chr1:91967324 synonymous SNV . 0 25 hm5C_associated_SNPs_113134 0 0 1 0 2 CDC7 chr1:91967245 3'AG 91967245 Downstream 80bp
chr1 91967324 91967324 1 + C G LUAD 91967320 + 91967300 91967340 41 GGATGAGCCAATGGCTTTTTCTCCCCAGCGTGACCGGTTTC GGATGAGCCAATGGCTTTTTCTCCGCAGCGTGACCGGTTTC < 41bp 0.613846223000322 0.848837278050724 0.13536099 0.2596345 prediction 0.469982110100804 Functional Gain - CDC7 ENSG00000097046 CDS Human protein_coding chr1:91967320 chr1:91967324 synonymous SNV . 0 25 hm5C_associated_SNPs_113134 0 0 1 0 2 CDC7 chr1:91967388 5'GT 91967388 Upstream 65bp
chr1 11718626 11718626 1 + C T UCEC 11718625 + 11718605 11718645 41 CCAGGTGGTGGACCTCAAGGCCGAAGGGTATTGGGAGGAGC CCAGGTGGTGGACCTCAAGGCTGAAGGGTATTGGGAGGAGC < 41bp 0.540404273881512 0.775389850241401 0.3087405 0.39344925 prediction 0.469971152719777 Functional Gain - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718625 chr1:11718626 stopgain 0.984 0 22 hm5C_associated_SNPs_113135 0 0 1 1 2 FBXO44 chr1:11718590 3'AG 11718590 Downstream 37bp
chr1 11718626 11718626 1 + C T UCEC 11718625 + 11718605 11718645 41 CCAGGTGGTGGACCTCAAGGCCGAAGGGTATTGGGAGGAGC CCAGGTGGTGGACCTCAAGGCTGAAGGGTATTGGGAGGAGC < 41bp 0.540404273881512 0.775389850241401 0.3087405 0.39344925 prediction 0.469971152719777 Functional Gain - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718625 chr1:11718626 stopgain 0.984 0 22 hm5C_associated_SNPs_113135 0 0 1 1 2 FBXO44 chr1:11718685 5'GT 11718685 Upstream 60bp
chr15 64444007 64444007 1 + C A rs368005220 64444006 + 64443986 64444026 41 TCACATCCCGTCGGTGGGGCCCGAGGCCGAGGGGCCCAGGC TCACATCCCGTCGGTGGGGCCAGAGGCCGAGGGGCCCAGGC < 41bp 0.545687990902687 0.780670167123955 0.8110044 0.89888906 prediction 0.469964352442534 Functional Gain - SNX22 ENSG00000157734 CDS Human protein_coding chr15:64444006 chr15:64444007 synonymous SNV . 0 22 hm5C_associated_SNPs_113137 0 0 1 0 1 SNX22 chr15:64444049 5'GT 64444049 Upstream 43bp
chr11 134131676 134131676 1 + C T STAD 134131675 + 134131655 134131695 41 TATGGCAACAAGGCTGGTGGCCGCGCGGCTGATGGTCCGCA TATGGCAACAAGGCTGGTGGCTGCGCGGCTGATGGTCCGCA < 41bp 0.487399860889882 0.734966523492622 0.3226592 0.23110366 prediction 0.469933046985245 Functional Gain - ACAD8 ENSG00000151498 CDS Human protein_coding chr11:134131675 chr11:134131676 synonymous SNV . 0 22 hm5C_associated_SNPs_113139 0 0 1 0 1 ACAD8 chr11:134131632 3'AG 134131632 Downstream 45bp
chr11 65392945 65392945 1 + C T SKCM 65392944 + 65392924 65392964 41 GGAGACAGCCCGGGCCGAGCCCCCGGACCCCTTGCCGGACA GGAGACAGCCCGGGCCGAGCCTCCGGACCCCTTGCCGGACA < 41bp 0.555899610384869 0.790859247816289 0.34260625 0.78845894 prediction 0.46991927486284 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65392944 chr11:65392945 synonymous SNV . 0 22 hm5C_associated_SNPs_113140 0 0 1 0 2 PCNX3 chr11:65392876 3'AG 65392876 Downstream 70bp
chr11 65392945 65392945 1 + C T SKCM 65392944 + 65392924 65392964 41 GGAGACAGCCCGGGCCGAGCCCCCGGACCCCTTGCCGGACA GGAGACAGCCCGGGCCGAGCCTCCGGACCCCTTGCCGGACA < 41bp 0.555899610384869 0.790859247816289 0.34260625 0.78845894 prediction 0.46991927486284 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65392944 chr11:65392945 synonymous SNV . 0 22 hm5C_associated_SNPs_113140 0 0 1 0 2 PCNX3 chr11:65392981 5'GT 65392981 Upstream 37bp
chr2 211457661 211457661 1 + C T STAD 211457660 + 211457640 211457680 41 AGTTCCACCCAGAGGTCACCCCGGGGCCAATAGACACTGAG AGTTCCACCCAGAGGTCACCCTGGGGCCAATAGACACTGAG < 41bp 0.510400693708088 0.745354411094401 0.8096806 0.18161237 prediction 0.469907434772625 Functional Gain - CPS1 ENSG00000021826 CDS Human protein_coding chr2:211457660 chr2:211457661 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_113141 0 0 0 0 2 CPS1 chr2:211457603 3'AG 211457603 Downstream 59bp
chr2 211457661 211457661 1 + C T STAD 211457660 + 211457640 211457680 41 AGTTCCACCCAGAGGTCACCCCGGGGCCAATAGACACTGAG AGTTCCACCCAGAGGTCACCCTGGGGCCAATAGACACTGAG < 41bp 0.510400693708088 0.745354411094401 0.8096806 0.18161237 prediction 0.469907434772625 Functional Gain - CPS1 ENSG00000021826 CDS Human protein_coding chr2:211457660 chr2:211457661 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_113141 0 0 0 0 2 CPS1 chr2:211457680 5'GT 211457680 Upstream 20bp
chr1 202276494 202276494 1 + C T rs896551 202276493 + 202276473 202276513 41 CGCCATCCGGTCCATCCACCCCGAGGCCTTCTCCACCCTGC CGCCATCCGGTCCATCCACCCTGAGGCCTTCTCCACCCTGC < 41bp 0.484296441454505 0.734947890728446 0.30999672 0.3056163 prediction 0.469895781456893 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202276493 chr1:202276494 synonymous SNV . 0 22 hm5C_associated_SNPs_113143 0 0 0 0 2 LGR6 chr1:202276458 3'AG 202276458 Downstream 37bp
chr1 202276494 202276494 1 + C T rs896551 202276493 + 202276473 202276513 41 CGCCATCCGGTCCATCCACCCCGAGGCCTTCTCCACCCTGC CGCCATCCGGTCCATCCACCCTGAGGCCTTCTCCACCCTGC < 41bp 0.484296441454505 0.734947890728446 0.30999672 0.3056163 prediction 0.469895781456893 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202276493 chr1:202276494 synonymous SNV . 0 22 hm5C_associated_SNPs_113143 0 0 0 0 2 LGR6 chr1:202276529 5'GT 202276529 Upstream 36bp
chr1 244747235 244747235 1 + C T UCEC 244747234 + 244747214 244747254 41 TTCAAAAGCATGTCCAATAGCCCAAAAGGTAAGCGACATGG TTCAAAAGCATGTCCAATAGCTCAAAAGGTAAGCGACATGG < 41bp 0.488495309752214 0.734943995305787 0.060456127 0.06272259 prediction 0.469887990611574 Functional Gain - CATSPERE ENSG00000179397 CDS Human protein_coding chr1:244747234 chr1:244747235 synonymous SNV . 0 22 hm5C_associated_SNPs_113144 0 0 0 0 2 CATSPERE chr1:244747166 3'AG 244747166 Downstream 70bp
chr1 244747235 244747235 1 + C T UCEC 244747234 + 244747214 244747254 41 TTCAAAAGCATGTCCAATAGCCCAAAAGGTAAGCGACATGG TTCAAAAGCATGTCCAATAGCTCAAAAGGTAAGCGACATGG < 41bp 0.488495309752214 0.734943995305787 0.060456127 0.06272259 prediction 0.469887990611574 Functional Gain - CATSPERE ENSG00000179397 CDS Human protein_coding chr1:244747234 chr1:244747235 synonymous SNV . 0 22 hm5C_associated_SNPs_113144 0 0 0 0 2 CATSPERE chr1:244747241 5'GT 244747241 Upstream 7bp
chr2 200826597 200826597 1 + T A LUSC 200826593 + 200826573 200826613 41 TAAGAGGAGCCAGTGTATTCCAGGTTAAGTTGGGGAATCAG TAAGAGGAGCCAGTGTATTCCAGGATAAGTTGGGGAATCAG < 41bp 0.644501708580014 0.879434229972279 0.4610764 0.6122866 prediction 0.469865042784529 Functional Gain - MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200826593 chr2:200826597 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_113145 0 0 1 0 2 MAIP1 chr2:200826504 3'AG 200826504 Downstream 94bp
chr2 200826597 200826597 1 + T A LUSC 200826593 + 200826573 200826613 41 TAAGAGGAGCCAGTGTATTCCAGGTTAAGTTGGGGAATCAG TAAGAGGAGCCAGTGTATTCCAGGATAAGTTGGGGAATCAG < 41bp 0.644501708580014 0.879434229972279 0.4610764 0.6122866 prediction 0.469865042784529 Functional Gain - MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200826593 chr2:200826597 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_113145 0 0 1 0 2 MAIP1 chr2:200826651 5'GT 200826651 Upstream 55bp
chr11 65412462 65412462 1 + C T COAD 65412461 + 65412441 65412481 41 AAGGTGGGCATCCTGTACTGCCGGGCGGGCCAGGGCTCGGA AAGGTGGGCATCCTGTACTGCTGGGCGGGCCAGGGCTCGGA < 41bp 0.525506571902731 0.760436983433114 0.23375246 0.20953527 prediction 0.469860823060766 Functional Gain - SIPA1 ENSG00000213445 CDS Human protein_coding chr11:65412461 chr11:65412462 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_113147 0 0 1 0 1 SIPA1 chr11:65412426 3'AG 65412426 Downstream 37bp
chrX 100240811 100240811 1 + C A UCEC 100240807 + 100240787 100240827 41 CAGGCCCATGGGCTTGTTTTCGTCCTGGATTCCAGTGACAT CAGGCCCATGGGCTTGTTTTCGTCATGGATTCCAGTGACAT < 41bp 0.321587965623277 0.734929382145455 0.5224399 0.437269 prediction 0.46985876429091 Functional Gain - ARL13A ENSG00000174225 CDS Human protein_coding chrX:100240807 chrX:100240811 nonsynonymous SNV 0.967 3 25 hm5C_associated_SNPs_113148 0 0 0 0 1 ARL13A chrX:100240905 5'GT 100240905 Upstream 95bp
chr2 207454216 207454216 1 + C T UCEC 207454215 + 207454195 207454235 41 AACTGCGGGAAGGATGGAGACCGGTGGATTCAGTGCAGCAA AACTGCGGGAAGGATGGAGACTGGTGGATTCAGTGCAGCAA < 41bp 0.491310704243665 0.734925376112676 0.5836453 0.5026091 prediction 0.469850752225352 Functional Gain - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207454215 chr2:207454216 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_113149 0 0 0 0 2 ADAM23 chr2:207454133 3'AG 207454133 Downstream 84bp
chr2 207454216 207454216 1 + C T UCEC 207454215 + 207454195 207454235 41 AACTGCGGGAAGGATGGAGACCGGTGGATTCAGTGCAGCAA AACTGCGGGAAGGATGGAGACTGGTGGATTCAGTGCAGCAA < 41bp 0.491310704243665 0.734925376112676 0.5836453 0.5026091 prediction 0.469850752225352 Functional Gain - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207454215 chr2:207454216 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_113149 0 0 0 0 2 ADAM23 chr2:207454238 5'GT 207454238 Upstream 23bp
chr11 65392946 65392946 1 + C T SKCM 65392945 + 65392925 65392965 41 GAGACAGCCCGGGCCGAGCCCCCGGACCCCTTGCCGGACAA GAGACAGCCCGGGCCGAGCCCTCGGACCCCTTGCCGGACAA < 41bp 0.547166543476304 0.782090770619495 0.33647662 0.28267524 prediction 0.469848454286381 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65392945 chr11:65392946 nonsynonymous SNV 0.938 0 22 hm5C_associated_SNPs_113150 0 0 1 0 2 PCNX3 chr11:65392876 3'AG 65392876 Downstream 71bp
chr11 65392946 65392946 1 + C T SKCM 65392945 + 65392925 65392965 41 GAGACAGCCCGGGCCGAGCCCCCGGACCCCTTGCCGGACAA GAGACAGCCCGGGCCGAGCCCTCGGACCCCTTGCCGGACAA < 41bp 0.547166543476304 0.782090770619495 0.33647662 0.28267524 prediction 0.469848454286381 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65392945 chr11:65392946 nonsynonymous SNV 0.938 0 22 hm5C_associated_SNPs_113150 0 0 1 0 2 PCNX3 chr11:65392981 5'GT 65392981 Upstream 36bp
chr10 71695138 71695138 1 + C T COAD 71695137 + 71695117 71695157 41 GCCAGGGCCAGAGGGGCCTCCCGGACCTCCGGTAAGTTTGG GCCAGGGCCAGAGGGGCCTCCTGGACCTCCGGTAAGTTTGG < 41bp 0.512230395304178 0.747149793131757 0.8126583 0.5842486 prediction 0.469838795655157 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71695137 chr10:71695138 synonymous SNV . 0 22 hm5C_associated_SNPs_113151 0 0 0 0 2 COL13A1 chr10:71695106 3'AG 71695106 Downstream 33bp
chr10 71695138 71695138 1 + C T COAD 71695137 + 71695117 71695157 41 GCCAGGGCCAGAGGGGCCTCCCGGACCTCCGGTAAGTTTGG GCCAGGGCCAGAGGGGCCTCCTGGACCTCCGGTAAGTTTGG < 41bp 0.512230395304178 0.747149793131757 0.8126583 0.5842486 prediction 0.469838795655157 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71695137 chr10:71695138 synonymous SNV . 0 22 hm5C_associated_SNPs_113151 0 0 0 0 2 COL13A1 chr10:71695147 5'GT 71695147 Upstream 10bp
chr17 19316902 19316902 1 + C A UCEC 19316901 + 19316881 19316921 41 CCTGCATAGGTGGCGGTGTTCCTGGTGGACACAGGGGATGC CCTGCATAGGTGGCGGTGTTCATGGTGGACACAGGGGATGC < 41bp 0.572240225826558 0.807156251347113 0.43529114 0.427831 prediction 0.469832051041109 Functional Gain - RNF112 ENSG00000128482 CDS Human protein_coding chr17:19316901 chr17:19316902 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_113153 0 0 0 0 2 RNF112 chr17:19316890 3'AG 19316890 Downstream 13bp
chr17 19316902 19316902 1 + C A UCEC 19316901 + 19316881 19316921 41 CCTGCATAGGTGGCGGTGTTCCTGGTGGACACAGGGGATGC CCTGCATAGGTGGCGGTGTTCATGGTGGACACAGGGGATGC < 41bp 0.572240225826558 0.807156251347113 0.43529114 0.427831 prediction 0.469832051041109 Functional Gain - RNF112 ENSG00000128482 CDS Human protein_coding chr17:19316901 chr17:19316902 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_113153 0 0 0 0 2 RNF112 chr17:19316994 5'GT 19316994 Upstream 93bp
chr11 124747423 124747423 1 + T C COAD 124747421 + 124747401 124747441 41 CTGCTCTCCCTCAGGCCACCCATGGGCCTTGGCCCCGCCCC CTGCTCTCCCTCAGGCCACCCACGGGCCTTGGCCCCGCCCC < 41bp 0.555697590251483 0.790605469113043 0.27347794 0.2250548 prediction 0.469815757723119 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747421 chr11:124747423 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_113156 0 0 0 0 1 ROBO3 chr11:124747415 3'AG 124747415 Downstream 9bp
chr1 22913046 22913046 1 + C T STAD 22913045 + 22913025 22913065 41 CTGCCCTCCCCACAGCCACTCCGCAGCTCCAGCCGCCCAAG CTGCCCTCCCCACAGCCACTCTGCAGCTCCAGCCGCCCAAG < 41bp 0.563021745616927 0.797925160467991 0.055181026 0.08405855 prediction 0.469806829702128 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22913045 chr1:22913046 synonymous SNV . 0 22 hm5C_associated_SNPs_113157 0 0 0 0 2 EPHA8 chr1:22912973 3'AG 22912973 Downstream 74bp
chr1 22913046 22913046 1 + C T STAD 22913045 + 22913025 22913065 41 CTGCCCTCCCCACAGCCACTCCGCAGCTCCAGCCGCCCAAG CTGCCCTCCCCACAGCCACTCTGCAGCTCCAGCCGCCCAAG < 41bp 0.563021745616927 0.797925160467991 0.055181026 0.08405855 prediction 0.469806829702128 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22913045 chr1:22913046 synonymous SNV . 0 22 hm5C_associated_SNPs_113157 0 0 0 0 2 EPHA8 chr1:22913128 5'GT 22913128 Upstream 83bp
chr7 44796724 44796724 1 + C T SKCM 44796723 + 44796703 44796743 41 TGTACAGCCGCGGGGGCTACCCTGGGGCCCCCGGCTTCACC TGTACAGCCGCGGGGGCTACCTTGGGGCCCCCGGCTTCACC < 41bp 0.54182200737039 0.776723724307157 0.90847194 0.39171392 prediction 0.469803433873534 Functional Gain - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44796723 chr7:44796724 nonsynonymous SNV 0.942 4 22 hm5C_associated_SNPs_113159 0 0 1 0 2 ZMIZ2 chr7:44796642 3'AG 44796642 Downstream 83bp
chr7 44796724 44796724 1 + C T SKCM 44796723 + 44796703 44796743 41 TGTACAGCCGCGGGGGCTACCCTGGGGCCCCCGGCTTCACC TGTACAGCCGCGGGGGCTACCTTGGGGCCCCCGGCTTCACC < 41bp 0.54182200737039 0.776723724307157 0.90847194 0.39171392 prediction 0.469803433873534 Functional Gain - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44796723 chr7:44796724 nonsynonymous SNV 0.942 4 22 hm5C_associated_SNPs_113159 0 0 1 0 2 ZMIZ2 chr7:44796748 5'GT 44796748 Upstream 25bp
chr19 54695428 54695428 1 + C A LGG 54695427 + 54695407 54695447 41 CGCCGTGACTCTGGTCAGCGCCCCGCGTCCAGACTCTCGGC CGCCGTGACTCTGGTCAGCGCACCGCGTCCAGACTCTCGGC < 41bp 0.47345076788479 0.734898900667502 0.3226041 0.4060981 prediction 0.469797801335004 Functional Gain - TSEN34 ENSG00000170892 CDS Human protein_coding chr19:54695427 chr19:54695428 synonymous SNV . 0 22 hm5C_associated_SNPs_113160 0 0 1 0 1 TSEN34 chr19:54695458 5'GT 54695458 Upstream 31bp
chr11 117062657 117062657 1 + C A LUAD 117062656 + 117062636 117062676 41 AGCTCTACCAGAAGCGGCACCCGGACATCAACGCCAGCGCC AGCTCTACCAGAAGCGGCACCAGGACATCAACGCCAGCGCC < 41bp 0.573056386742608 0.807951624213224 0.49566868 0.73491174 prediction 0.469790474941232 Functional Gain - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117062656 chr11:117062657 nonsynonymous SNV 0.826 4 22 hm5C_associated_SNPs_113162 0 0 1 0 2 SIDT2 chr11:117062594 3'AG 117062594 Downstream 64bp
chr11 117062657 117062657 1 + C A LUAD 117062656 + 117062636 117062676 41 AGCTCTACCAGAAGCGGCACCCGGACATCAACGCCAGCGCC AGCTCTACCAGAAGCGGCACCAGGACATCAACGCCAGCGCC < 41bp 0.573056386742608 0.807951624213224 0.49566868 0.73491174 prediction 0.469790474941232 Functional Gain - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117062656 chr11:117062657 nonsynonymous SNV 0.826 4 22 hm5C_associated_SNPs_113162 0 0 1 0 2 SIDT2 chr11:117062730 5'GT 117062730 Upstream 74bp
chr2 233272657 233272657 1 + T G COAD 233272655 + 233272635 233272675 41 AACTGGTACTCGGATGCCGACGTGCCTGCCTCGGCCCGCCA AACTGGTACTCGGATGCCGACGGGCCTGCCTCGGCCCGCCA < 41bp 0.373919703456429 0.734890599383846 0.90515226 0.9303057 prediction 0.469781198767691 Functional Gain - ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233272655 chr2:233272657 nonsynonymous SNV 0.004 4 23 hm5C_associated_SNPs_113164 0 0 0 0 1 ALPPL2 chr2:233272727 5'GT 233272727 Upstream 71bp
chr8 28908624 28908624 1 + C T SKCM 28908623 + 28908603 28908643 41 CCACACTATCTTGGCATTGGCCCGACAAGGAGCCAACGAAA CCACACTATCTTGGCATTGGCTCGACAAGGAGCCAACGAAA < 41bp 0.523770048220877 0.758656505735923 0.1012229 0.27613604 prediction 0.469772915030093 Functional Gain - HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28908623 chr8:28908624 synonymous SNV . 0 22 hm5C_associated_SNPs_113166 0 0 1 0 1 HMBOX1 chr8:28908535 3'AG 28908535 Downstream 90bp
chr1 1115954 1115954 1 + C G rs191284590 1115953 + 1115933 1115973 41 AAGTGGTGTGAGGTCAAGAGCCGAGACAGCTACGGCAGCTT AAGTGGTGTGAGGTCAAGAGCGGAGACAGCTACGGCAGCTT < 41bp 0.415914792855602 0.734884113624198 0.4330774 0.85270953 prediction 0.469768227248396 Functional Gain - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1115953 chr1:1115954 nonsynonymous SNV 0.208 0 22 hm5C_associated_SNPs_113167 0 0 0 0 2 TTLL10 chr1:1115863 3'AG 1115863 Downstream 92bp
chr1 1115954 1115954 1 + C G rs191284590 1115953 + 1115933 1115973 41 AAGTGGTGTGAGGTCAAGAGCCGAGACAGCTACGGCAGCTT AAGTGGTGTGAGGTCAAGAGCGGAGACAGCTACGGCAGCTT < 41bp 0.415914792855602 0.734884113624198 0.4330774 0.85270953 prediction 0.469768227248396 Functional Gain - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1115953 chr1:1115954 nonsynonymous SNV 0.208 0 22 hm5C_associated_SNPs_113167 0 0 0 0 2 TTLL10 chr1:1115981 5'GT 1115981 Upstream 28bp
chr17 47218740 47218740 1 + C A LUSC 47218739 + 47218719 47218759 41 CAGAACTCCCAAGTCCTGCCCCGGGTGTCCAGAAGCTGAAG CAGAACTCCCAAGTCCTGCCCAGGGTGTCCAGAAGCTGAAG < 41bp 0.585708825645995 0.820589765970295 0.88492584 0.89837945 prediction 0.469761880648599 Functional Gain - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47218739 chr17:47218740 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_113170 0 0 0 0 1 B4GALNT2 chr17:47218809 5'GT 47218809 Upstream 70bp
chr5 148682070 148682070 1 + T C LIHC 148682068 + 148682048 148682088 41 CTCTGGGACCCGGCAAGTCGCCTGAGTACATCAGCTCCCAC CTCTGGGACCCGGCAAGTCGCCCGAGTACATCAGCTCCCAC < 41bp 0.592272757445673 0.827148910214167 0.26334894 0.37474483 prediction 0.469752305536988 Functional Gain - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148682068 chr5:148682070 synonymous SNV . 0 23 hm5C_associated_SNPs_113171 0 0 1 0 2 AFAP1L1 chr5:148681981 3'AG 148681981 Downstream 90bp
chr5 148682070 148682070 1 + T C LIHC 148682068 + 148682048 148682088 41 CTCTGGGACCCGGCAAGTCGCCTGAGTACATCAGCTCCCAC CTCTGGGACCCGGCAAGTCGCCCGAGTACATCAGCTCCCAC < 41bp 0.592272757445673 0.827148910214167 0.26334894 0.37474483 prediction 0.469752305536988 Functional Gain - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148682068 chr5:148682070 synonymous SNV . 0 23 hm5C_associated_SNPs_113171 0 0 1 0 2 AFAP1L1 chr5:148682089 5'GT 148682089 Upstream 20bp
chr14 105055043 105055043 1 + C A rs181202218 105055039 + 105055019 105055059 41 GTGGCAACGGCACTGGAGGACCTGCGGGCCCGGCTCCTCGG GTGGCAACGGCACTGGAGGACCTGAGGGCCCGGCTCCTCGG < 41bp 0.361805198502228 0.734870611325686 0.5765387 0.58301306 prediction 0.469741222651373 Functional Gain - C14orf180 ENSG00000184601 CDS Human protein_coding chr14:105055039 chr14:105055043 nonsynonymous SNV 0.053 1 25 hm5C_associated_SNPs_113177 0 0 0 0 1 C14orf180 chr14:105054959 3'AG 105054959 Downstream 85bp
chr16 81295770 81295770 1 + C T SARC 81295769 + 81295749 81295789 41 CCTACTTGTCTCACACCATCCCCGATTTCACCGACAACTGC CCTACTTGTCTCACACCATCCTCGATTTCACCGACAACTGC < 41bp 0.580139801166943 0.814999959845425 0.04711595 0.3597424 prediction 0.469720317356964 Functional Gain - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81295769 chr16:81295770 nonsynonymous SNV 0.985 5 22 hm5C_associated_SNPs_113179 0 0 0 0 1 BCO1 chr16:81295741 3'AG 81295741 Downstream 30bp
chr14 37132701 37132701 1 + C A COAD 37132700 + 37132680 37132720 41 TCGCACTCCGTCACCGACATCCTGGGCATCCGCTCCATCAC TCGCACTCCGTCACCGACATCATGGGCATCCGCTCCATCAC < 41bp 0.471506379402428 0.734855840136594 0.21004057 0.41421735 prediction 0.469711680273187 Functional Gain - PAX9 ENSG00000198807 CDS Human protein_coding chr14:37132700 chr14:37132701 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_113182 0 0 1 0 1 PAX9 chr14:37132728 5'GT 37132728 Upstream 28bp
chr3 121295729 121295729 1 + C G rs140537962 121295725 + 121295705 121295745 41 ACTGATCCTCCCACCTCAGCCTCCCGAGTAGCTGCGACTAC ACTGATCCTCCCACCTCAGCCTCCGGAGTAGCTGCGACTAC < 41bp 0.443865588090443 0.734852161319507 0.3453267 0.7193421 prediction 0.469704322639015 Functional Gain - ARGFX ENSG00000186103 CDS Human protein_coding chr3:121295725 chr3:121295729 nonsynonymous SNV 0.056 0 25 hm5C_associated_SNPs_113183 0 0 0 0 2 ARGFX chr3:121295631 3'AG 121295631 Downstream 99bp
chr3 121295729 121295729 1 + C G rs140537962 121295725 + 121295705 121295745 41 ACTGATCCTCCCACCTCAGCCTCCCGAGTAGCTGCGACTAC ACTGATCCTCCCACCTCAGCCTCCGGAGTAGCTGCGACTAC < 41bp 0.443865588090443 0.734852161319507 0.3453267 0.7193421 prediction 0.469704322639015 Functional Gain - ARGFX ENSG00000186103 CDS Human protein_coding chr3:121295725 chr3:121295729 nonsynonymous SNV 0.056 0 25 hm5C_associated_SNPs_113183 0 0 0 0 2 ARGFX chr3:121295747 5'GT 121295747 Upstream 19bp
chr1 15370623 15370623 1 + C T GBM 15370622 + 15370602 15370642 41 CAGCTGGACCTCAAGGACAACCGGATGAAGGAGCTGGAGGC CAGCTGGACCTCAAGGACAACTGGATGAAGGAGCTGGAGGC < 41bp 0.532950636746149 0.767801487190435 0.8861742 0.409948 prediction 0.469701700888572 Functional Gain - KAZN ENSG00000189337 CDS Human protein_coding chr1:15370622 chr1:15370623 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_113184 0 0 1 0 1 KAZN chr1:15370655 5'GT 15370655 Upstream 33bp
chr1 161645092 161645092 1 + C A LUAD 161645091 + 161645071 161645111 41 GGGAAATGGGAGAGACCCTCCCTGAGAAACCAGGTGAGTAC GGGAAATGGGAGAGACCCTCCATGAGAAACCAGGTGAGTAC < 41bp 0.55513942332935 0.78998449545195 0.06753206 0.14799786 prediction 0.4696901442452 Functional Gain - FCGR2B ENSG00000072694 CDS Human protein_coding chr1:161645091 chr1:161645092 nonsynonymous SNV 0.025 3 22 hm5C_associated_SNPs_113185 0 0 1 0 2 FCGR2B chr1:161645047 3'AG 161645047 Downstream 46bp
chr1 161645092 161645092 1 + C A LUAD 161645091 + 161645071 161645111 41 GGGAAATGGGAGAGACCCTCCCTGAGAAACCAGGTGAGTAC GGGAAATGGGAGAGACCCTCCATGAGAAACCAGGTGAGTAC < 41bp 0.55513942332935 0.78998449545195 0.06753206 0.14799786 prediction 0.4696901442452 Functional Gain - FCGR2B ENSG00000072694 CDS Human protein_coding chr1:161645091 chr1:161645092 nonsynonymous SNV 0.025 3 22 hm5C_associated_SNPs_113185 0 0 1 0 2 FCGR2B chr1:161645103 5'GT 161645103 Upstream 12bp
chr1 32636331 32636331 1 + C T SKCM 32636330 + 32636310 32636350 41 TTGGATAAAATTGAGTTTCTCCAGAGCCACGAGAACCAGGA TTGGATAAAATTGAGTTTCTCTAGAGCCACGAGAACCAGGA < 41bp 0.497913076474158 0.734820353188229 0.8790605 0.69864434 prediction 0.469640706376458 Functional Gain - KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32636330 chr1:32636331 stopgain 1.000 1 22 hm5C_associated_SNPs_113187 0 0 1 0 1 KPNA6 chr1:32636308 3'AG 32636308 Downstream 24bp
chr6 160240367 160240367 1 + C G rs145371225 160240363 + 160240343 160240383 41 CCGCTACTGGAGGCACTCCCCAAACGTCAACTGCCTGCTCC CCGCTACTGGAGGCACTCCCCAAAGGTCAACTGCCTGCTCC < 41bp 0.60703041463899 0.841849474676198 0.40760702 0.52882075 prediction 0.469638120074416 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160240363 chr6:160240367 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_113188 0 0 0 0 2 PNLDC1 chr6:160240286 3'AG 160240286 Downstream 82bp
chr6 160240367 160240367 1 + C G rs145371225 160240363 + 160240343 160240383 41 CCGCTACTGGAGGCACTCCCCAAACGTCAACTGCCTGCTCC CCGCTACTGGAGGCACTCCCCAAAGGTCAACTGCCTGCTCC < 41bp 0.60703041463899 0.841849474676198 0.40760702 0.52882075 prediction 0.469638120074416 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160240363 chr6:160240367 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_113188 0 0 0 0 2 PNLDC1 chr6:160240384 5'GT 160240384 Upstream 18bp
chr18 77193653 77193653 1 + C T SKCM 77193652 + 77193632 77193672 41 AGCTTCGGATTGAGGTGCAGCCCAAGTCCCACCACCGAGCC AGCTTCGGATTGAGGTGCAGCTCAAGTCCCACCACCGAGCC < 41bp 0.560065675678758 0.794876018630523 0.04475993 0.056142986 prediction 0.469620685903531 Functional Gain - NFATC1 ENSG00000131196 CDS Human protein_coding chr18:77193652 chr18:77193653 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_113190 0 0 0 0 2 NFATC1 chr18:77193579 3'AG 77193579 Downstream 75bp
chr18 77193653 77193653 1 + C T SKCM 77193652 + 77193632 77193672 41 AGCTTCGGATTGAGGTGCAGCCCAAGTCCCACCACCGAGCC AGCTTCGGATTGAGGTGCAGCTCAAGTCCCACCACCGAGCC < 41bp 0.560065675678758 0.794876018630523 0.04475993 0.056142986 prediction 0.469620685903531 Functional Gain - NFATC1 ENSG00000131196 CDS Human protein_coding chr18:77193652 chr18:77193653 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_113190 0 0 0 0 2 NFATC1 chr18:77193738 5'GT 77193738 Upstream 86bp
chr19 3115012 3115012 1 + C T LUAD 3115011 + 3114991 3115031 41 CAGCAGGACGTGCTGCGGGTCCGCGTGCCCACCACCGGCAT CAGCAGGACGTGCTGCGGGTCTGCGTGCCCACCACCGGCAT < 41bp 0.543952003393255 0.778761718406645 0.19954947 0.109330714 prediction 0.46961943002678 Functional Gain - GNA11 ENSG00000088256 CDS Human protein_coding chr19:3115011 chr19:3115012 nonsynonymous SNV 0.991 5 22 hm5C_associated_SNPs_113191 0 0 1 0 2 GNA11 chr19:3114942 3'AG 3114942 Downstream 71bp
chr19 3115012 3115012 1 + C T LUAD 3115011 + 3114991 3115031 41 CAGCAGGACGTGCTGCGGGTCCGCGTGCCCACCACCGGCAT CAGCAGGACGTGCTGCGGGTCTGCGTGCCCACCACCGGCAT < 41bp 0.543952003393255 0.778761718406645 0.19954947 0.109330714 prediction 0.46961943002678 Functional Gain - GNA11 ENSG00000088256 CDS Human protein_coding chr19:3115011 chr19:3115012 nonsynonymous SNV 0.991 5 22 hm5C_associated_SNPs_113191 0 0 1 0 2 GNA11 chr19:3115070 5'GT 3115070 Upstream 59bp
chr6 41309564 41309564 1 + C T STAD 41309563 + 41309543 41309583 41 ACACAGACCTCCTGGACTCCCCGCGACCTGGTCTCTTCACA ACACAGACCTCCTGGACTCCCTGCGACCTGGTCTCTTCACA < 41bp 0.516021840259509 0.750831128216036 0.36036333 0.12606463 prediction 0.469618575913056 Functional Gain - NCR2 ENSG00000096264 CDS Human protein_coding chr6:41309563 chr6:41309564 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_113192 0 0 0 0 1 NCR2 chr6:41309532 3'AG 41309532 Downstream 33bp
chr16 85948108 85948108 1 + T A LUSC 85948104 + 85948084 85948124 41 CCGCTGGTGACGGGGTACACCACCTACGACGCGCACCATTC CCGCTGGTGACGGGGTACACCACCAACGACGCGCACCATTC < 41bp 0.65899974027494 0.893807965166286 0.08781472 0.30960807 prediction 0.469616449782693 Functional Gain - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85948104 chr16:85948108 nonsynonymous SNV 0.059 1 25 hm5C_associated_SNPs_113193 0 0 0 0 2 IRF8 chr16:85948079 3'AG 85948079 Downstream 30bp
chr16 85948108 85948108 1 + T A LUSC 85948104 + 85948084 85948124 41 CCGCTGGTGACGGGGTACACCACCTACGACGCGCACCATTC CCGCTGGTGACGGGGTACACCACCAACGACGCGCACCATTC < 41bp 0.65899974027494 0.893807965166286 0.08781472 0.30960807 prediction 0.469616449782693 Functional Gain - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85948104 chr16:85948108 nonsynonymous SNV 0.059 1 25 hm5C_associated_SNPs_113193 0 0 0 0 2 IRF8 chr16:85948126 5'GT 85948126 Upstream 19bp
chr5 76342465 76342465 1 + T G SKCM 76342462 + 76342442 76342482 41 AGTTATGACGAAGCCATTACCAGTGAAGGCAATGTAACTGC AGTTATGACGAAGCCATTACCAGGGAAGGCAATGTAACTGC < 41bp 0.685825246457406 0.920632108501812 0.14270863 0.92560387 prediction 0.469613724088812 Functional Gain - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76342462 chr5:76342465 nonsynonymous SNV 0.280 3 24 hm5C_associated_SNPs_113194 0 0 1 0 1 AGGF1 chr5:76342502 5'GT 76342502 Upstream 38bp
chr2 220113242 220113242 1 + T G rs7601549 220113240 + 220113220 220113260 41 TCCTCAGTCAGCTGGAGGCGCTTCAGCCCCCAGCTCCTGGC TCCTCAGTCAGCTGGAGGCGCTGCAGCCCCCAGCTCCTGGC < 41bp 0.655449609669914 0.890242095657764 0.25716072 0.2703749 prediction 0.469584971975699 Functional Gain - STK16 ENSG00000115661 CDS Human protein_coding chr2:220113240 chr2:220113242 synonymous SNV . 0 23 hm5C_associated_SNPs_113198 0 0 1 0 1 STK16 chr2:220113143 3'AG 220113143 Downstream 100bp
chr2 132235914 132235914 1 + C A LUAD 132235910 + 132235890 132235930 41 TTCAGTGAGACTGGAGCTGGCAAGCACGTGCCCAGAGCAGT TTCAGTGAGACTGGAGCTGGCAAGAACGTGCCCAGAGCAGT < 41bp 0.521420350278158 0.756211006041939 0.2099269 0.2681616 prediction 0.469581311527563 Functional Gain - TUBA3D ENSG00000075886 CDS Human protein_coding chr2:132235910 chr2:132235914 nonsynonymous SNV 0.982 0 25 hm5C_associated_SNPs_113199 0 0 0 0 1 TUBA3D chr2:132235959 5'GT 132235959 Upstream 46bp
chr8 124141340 124141340 1 + C A rs55959319 124141336 + 124141316 124141356 41 GAAGATATGCAAGCTAAAGTCGACCAGCAAAGAGTTGAAGA GAAGATATGCAAGCTAAAGTCGACAAGCAAAGAGTTGAAGA < 41bp 0.319817523936063 0.734769092507683 0.16401666 0.18487445 prediction 0.469538185015365 Functional Gain - TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124141336 chr8:124141340 nonsynonymous SNV 0.520 0 25 hm5C_associated_SNPs_113205 0 0 1 0 2 TBC1D31 chr8:124141306 3'AG 124141306 Downstream 35bp
chr8 124141340 124141340 1 + C A rs55959319 124141336 + 124141316 124141356 41 GAAGATATGCAAGCTAAAGTCGACCAGCAAAGAGTTGAAGA GAAGATATGCAAGCTAAAGTCGACAAGCAAAGAGTTGAAGA < 41bp 0.319817523936063 0.734769092507683 0.16401666 0.18487445 prediction 0.469538185015365 Functional Gain - TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124141336 chr8:124141340 nonsynonymous SNV 0.520 0 25 hm5C_associated_SNPs_113205 0 0 1 0 2 TBC1D31 chr8:124141310 3'AG 124141310 Downstream 31bp
chr16 31499366 31499366 1 + T C OV 31499364 + 31499344 31499384 41 ACGCCCCTCCCGTAGGTCATCGTGCAGCGCTGCCTGGCCGG ACGCCCCTCCCGTAGGTCATCGCGCAGCGCTGCCTGGCCGG < 41bp 0.497122525960488 0.734765937790799 0.23458213 0.60266113 prediction 0.469531875581598 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31499364 chr16:31499366 nonsynonymous SNV 0.981 3 23 hm5C_associated_SNPs_113206 0 0 0 0 1 SLC5A2 chr16:31499359 3'AG 31499359 Downstream 8bp
chr6 158349734 158349734 1 + C T PAAD 158349733 + 158349713 158349753 41 CACTGGAAGCGCTGCACGGGCCGTAAGTCCACTCCTCACAG CACTGGAAGCGCTGCACGGGCTGTAAGTCCACTCCTCACAG < 41bp 0.544532561999356 0.779295902643815 0.09172946 0.06414434 prediction 0.46952668128892 Functional Gain - SNX9 ENSG00000130340 CDS Human protein_coding chr6:158349733 chr6:158349734 nonsynonymous SNV 0.342 3 22 hm5C_associated_SNPs_113207 0 0 1 0 1 SNX9 chr6:158349734 5'GT 158349734 Upstream 1bp
chr8 96044275 96044275 1 + C T STAD 96044274 + 96044254 96044294 41 CTGCTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCACT CTGCTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCACT < 41bp 0.481482208684555 0.734761892304681 0.38824707 0.44514576 prediction 0.469523784609362 Functional Gain - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044274 chr8:96044275 stopgain 0.994 0 22 hm5C_associated_SNPs_113208 0 0 1 8 2 NDUFAF6 chr8:96044223 3'AG 96044223 Downstream 53bp
chr8 96044275 96044275 1 + C T STAD 96044274 + 96044254 96044294 41 CTGCTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCACT CTGCTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCACT < 41bp 0.481482208684555 0.734761892304681 0.38824707 0.44514576 prediction 0.469523784609362 Functional Gain - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044274 chr8:96044275 stopgain 0.994 0 22 hm5C_associated_SNPs_113208 0 0 1 8 2 NDUFAF6 chr8:96044326 5'GT 96044326 Upstream 52bp
chr17 77042718 77042718 1 + C A rs11077409 77042717 + 77042697 77042737 41 GTGCTTGCGCTGCTGTGACCCCGGTACCTCCATGTACCCGG GTGCTTGCGCTGCTGTGACCCAGGTACCTCCATGTACCCGG < 41bp 0.581788323530369 0.816548529650476 0.009452224 0.6379945 prediction 0.469520412240212 Functional Gain - C1QTNF1 ENSG00000173918 CDS Human protein_coding chr17:77042717 chr17:77042718 synonymous SNV . 0 22 hm5C_associated_SNPs_113209 0 0 0 0 2 C1QTNF1 chr17:77042637 3'AG 77042637 Downstream 82bp
chr17 77042718 77042718 1 + C A rs11077409 77042717 + 77042697 77042737 41 GTGCTTGCGCTGCTGTGACCCCGGTACCTCCATGTACCCGG GTGCTTGCGCTGCTGTGACCCAGGTACCTCCATGTACCCGG < 41bp 0.581788323530369 0.816548529650476 0.009452224 0.6379945 prediction 0.469520412240212 Functional Gain - C1QTNF1 ENSG00000173918 CDS Human protein_coding chr17:77042717 chr17:77042718 synonymous SNV . 0 22 hm5C_associated_SNPs_113209 0 0 0 0 2 C1QTNF1 chr17:77042776 5'GT 77042776 Upstream 59bp
chr4 88902885 88902885 1 + C A LUAD 88902884 + 88902864 88902904 41 ACAGTAGACACATATGATGGCCGAGGTGATAGTGTGGTTTA ACAGTAGACACATATGATGGCAGAGGTGATAGTGTGGTTTA < 41bp 0.478274710236002 0.734760198365609 0.23565766 0.77886885 prediction 0.469520396731218 Functional Gain - SPP1 ENSG00000118785 CDS Human protein_coding chr4:88902884 chr4:88902885 synonymous SNV . 0 22 hm5C_associated_SNPs_113210 0 0 1 0 1 SPP1 chr4:88902950 5'GT 88902950 Upstream 66bp
chr2 233410280 233410280 1 + C A LUSC 233410279 + 233410259 233410299 41 GAGGAGTGGTTCCTGGTGGGCCGAGTGCTGGACCGCGTCTG GAGGAGTGGTTCCTGGTGGGCAGAGTGCTGGACCGCGTCTG < 41bp 0.556459069214356 0.791215560170687 0.553107 0.82300603 prediction 0.469512981912661 Functional Gain - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233410279 chr2:233410280 synonymous SNV . 0 22 hm5C_associated_SNPs_113211 0 0 0 0 1 CHRNG chr2:233410253 3'AG 233410253 Downstream 28bp
chr1 155719801 155719801 1 + A G rs560293852 155719798 + 155719778 155719818 41 AGCCTTGGCCAGAGACCTCACCAAACTCGACTTGCGGCGCT AGCCTTGGCCAGAGACCTCACCAGACTCGACTTGCGGCGCT < 41bp 0.504756280302032 0.739510200077988 0.29510057 0.6106676 prediction 0.469507839551912 Functional Gain - MSTO2P ENSG00000203761 ncRNA_exonic Human unprocessed_pseudogene chr1:155719798 chr1:155719801 . . 0 24 hm5C_associated_SNPs_113213 0 0 0 0 2 MSTO2P chr1:155719714 3'AG 155719714 Downstream 88bp
chr1 155719801 155719801 1 + A G rs560293852 155719798 + 155719778 155719818 41 AGCCTTGGCCAGAGACCTCACCAAACTCGACTTGCGGCGCT AGCCTTGGCCAGAGACCTCACCAGACTCGACTTGCGGCGCT < 41bp 0.504756280302032 0.739510200077988 0.29510057 0.6106676 prediction 0.469507839551912 Functional Gain - MSTO2P ENSG00000203761 ncRNA_exonic Human unprocessed_pseudogene chr1:155719798 chr1:155719801 . . 0 24 hm5C_associated_SNPs_113213 0 0 0 0 2 MSTO2P chr1:155719717 3'AG 155719717 Downstream 85bp
chr8 69030858 69030858 1 + C A SARC 69030857 + 69030837 69030877 41 AGCCAGTGCAGCTCGTATTTCCACAGTGATGAAATGGACTC AGCCAGTGCAGCTCGTATTTCAACAGTGATGAAATGGACTC < 41bp 0.537840050453143 0.77258143615065 0.5500027 0.48657322 prediction 0.469482771395014 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69030857 chr8:69030858 nonsynonymous SNV 0.983 2 22 hm5C_associated_SNPs_113215 0 0 0 0 2 PREX2 chr8:69030785 3'AG 69030785 Downstream 74bp
chr8 69030858 69030858 1 + C A SARC 69030857 + 69030837 69030877 41 AGCCAGTGCAGCTCGTATTTCCACAGTGATGAAATGGACTC AGCCAGTGCAGCTCGTATTTCAACAGTGATGAAATGGACTC < 41bp 0.537840050453143 0.77258143615065 0.5500027 0.48657322 prediction 0.469482771395014 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69030857 chr8:69030858 nonsynonymous SNV 0.983 2 22 hm5C_associated_SNPs_113215 0 0 0 0 2 PREX2 chr8:69030879 5'GT 69030879 Upstream 22bp
chr1 84543970 84543970 1 + C A rs199581787 84543966 + 84543946 84543986 41 AGTGGCGGGCACGGCCCCAGCCCCCCTTCCCTTCCCTGACC AGTGGCGGGCACGGCCCCAGCCCCACTTCCCTTCCCTGACC < 41bp 0.44605966598699 0.734740940868142 0.03273213 0.08255333 prediction 0.469481881736284 Functional Gain - PRKACB ENSG00000142875 UTR5 Human protein_coding chr1:84543966 chr1:84543970 . . 0 25 hm5C_associated_SNPs_113216 0 0 1 0 1 PRKACB chr1:84544054 5'GT 84544054 Upstream 85bp
chr9 133914304 133914304 1 + C T UCEC 133914303 + 133914283 133914323 41 ACGTTTGATCGGGAGCTCTTCCGCAGCACAGGCCACGGCGG ACGTTTGATCGGGAGCTCTTCTGCAGCACAGGCCACGGCGG < 41bp 0.557754277960142 0.792494766974265 0.8656565 0.4082559 prediction 0.469480978028248 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133914303 chr9:133914304 nonsynonymous SNV 0.984 4 22 hm5C_associated_SNPs_113217 0 0 0 0 1 LAMC3 chr9:133914251 3'AG 133914251 Downstream 54bp
chr11 118243308 118243308 1 + C T SKCM 118243307 + 118243287 118243327 41 TACCCGAACAGTTCTTCTCACCCCAGAGATCTATGTTGACC TACCCGAACAGTTCTTCTCACTCCAGAGATCTATGTTGACC < 41bp 0.454187521075896 0.734736170917047 0.04244247 0.9060279 prediction 0.469472341834093 Functional Gain - UBE4A ENSG00000110344 CDS Human protein_coding chr11:118243307 chr11:118243308 synonymous SNV . 0 22 hm5C_associated_SNPs_113218 0 0 1 0 3 UBE4A chr11:118243222 3'AG 118243222 Downstream 87bp
chr11 118243308 118243308 1 + C T SKCM 118243307 + 118243287 118243327 41 TACCCGAACAGTTCTTCTCACCCCAGAGATCTATGTTGACC TACCCGAACAGTTCTTCTCACTCCAGAGATCTATGTTGACC < 41bp 0.454187521075896 0.734736170917047 0.04244247 0.9060279 prediction 0.469472341834093 Functional Gain - UBE4A ENSG00000110344 CDS Human protein_coding chr11:118243307 chr11:118243308 synonymous SNV . 0 22 hm5C_associated_SNPs_113218 0 0 1 0 3 UBE4A chr11:118243381 5'GT 118243381 Upstream 74bp
chr11 118243308 118243308 1 + C T SKCM 118243307 + 118243287 118243327 41 TACCCGAACAGTTCTTCTCACCCCAGAGATCTATGTTGACC TACCCGAACAGTTCTTCTCACTCCAGAGATCTATGTTGACC < 41bp 0.454187521075896 0.734736170917047 0.04244247 0.9060279 prediction 0.469472341834093 Functional Gain - UBE4A ENSG00000110344 CDS Human protein_coding chr11:118243307 chr11:118243308 synonymous SNV . 0 22 hm5C_associated_SNPs_113218 0 0 1 0 3 UBE4A chr11:118243402 5'GT 118243402 Upstream 95bp
chr19 42396676 42396676 1 + C G OV 42396675 + 42396655 42396695 41 CCCATGTGTGTCCCTGCAGACCGCACTAGGGCTGACCTCAT CCCATGTGTGTCCCTGCAGACGGCACTAGGGCTGACCTCAT < 41bp 0.422156667946078 0.734735627702529 0.15603188 0.36133128 prediction 0.469471255405058 Functional Gain - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42396675 chr19:42396676 nonsynonymous SNV 0.026 5 22 hm5C_associated_SNPs_113219 0 0 1 0 1 ARHGEF1 chr19:42396674 3'AG 42396674 Downstream 3bp
chr5 78417094 78417094 1 + C T COAD 78417093 + 78417073 78417113 41 AGTTGAAACCTTGATAGCATCCGGTAAACCTGTGGCAGCAA AGTTGAAACCTTGATAGCATCTGGTAAACCTGTGGCAGCAA < 41bp 0.53482499857146 0.769558637193333 0.13557333 0.103802145 prediction 0.469467277243746 Functional Gain - BHMT ENSG00000145692 CDS Human protein_coding chr5:78417093 chr5:78417094 synonymous SNV . 0 22 hm5C_associated_SNPs_113220 0 0 0 0 2 BHMT chr5:78417041 3'AG 78417041 Downstream 54bp
chr5 78417094 78417094 1 + C T COAD 78417093 + 78417073 78417113 41 AGTTGAAACCTTGATAGCATCCGGTAAACCTGTGGCAGCAA AGTTGAAACCTTGATAGCATCTGGTAAACCTGTGGCAGCAA < 41bp 0.53482499857146 0.769558637193333 0.13557333 0.103802145 prediction 0.469467277243746 Functional Gain - BHMT ENSG00000145692 CDS Human protein_coding chr5:78417093 chr5:78417094 synonymous SNV . 0 22 hm5C_associated_SNPs_113220 0 0 0 0 2 BHMT chr5:78417188 5'GT 78417188 Upstream 95bp
chr15 41859592 41859592 1 + C G OV 41859588 + 41859568 41859608 41 CCCCAGGAGGCTGGGAAGTCCTGGCTGTTGTGGTCCCTGTG CCCCAGGAGGCTGGGAAGTCCTGGGTGTTGTGGTCCCTGTG < 41bp 0.622362375988612 0.857089733736933 0.73219156 0.90132284 prediction 0.469454715496641 Functional Gain - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41859588 chr15:41859592 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_113223 0 0 0 0 1 TYRO3 chr15:41859558 3'AG 41859558 Downstream 35bp
chr2 132290612 132290612 1 + A G rs533306063 132290609 + 132290589 132290629 41 CCAAGAAGCCACGCATTTCCCCAAGGTCTCCACCAAGAGCC CCAAGAAGCCACGCATTTCCCCAGGGTCTCCACCAAGAGCC < 41bp 0.485990773412318 0.734718352868307 0.052446038 0.5284064 prediction 0.469436705736614 Functional Gain - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132290609 chr2:132290612 nonsynonymous SNV 0.534 2 24 hm5C_associated_SNPs_113227 0 0 0 0 2 CCDC74A chr2:132290586 3'AG 132290586 Downstream 27bp
chr2 132290612 132290612 1 + A G rs533306063 132290609 + 132290589 132290629 41 CCAAGAAGCCACGCATTTCCCCAAGGTCTCCACCAAGAGCC CCAAGAAGCCACGCATTTCCCCAGGGTCTCCACCAAGAGCC < 41bp 0.485990773412318 0.734718352868307 0.052446038 0.5284064 prediction 0.469436705736614 Functional Gain - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132290609 chr2:132290612 nonsynonymous SNV 0.534 2 24 hm5C_associated_SNPs_113227 0 0 0 0 2 CCDC74A chr2:132290642 5'GT 132290642 Upstream 31bp
chr9 101749611 101749611 1 + C A ACC 101749610 + 101749590 101749630 41 GCTCACCGTGCACCCCGACCCCAGGACTCCCGAGGAGCTGT GCTCACCGTGCACCCCGACCCAAGGACTCCCGAGGAGCTGT < 41bp 0.467964132570704 0.734716614096653 0.83922803 0.9100441 prediction 0.469433228193307 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101749610 chr9:101749611 synonymous SNV . 0 22 hm5C_associated_SNPs_113228 0 0 0 0 2 COL15A1 chr9:101749576 3'AG 101749576 Downstream 36bp
chr9 101749611 101749611 1 + C A ACC 101749610 + 101749590 101749630 41 GCTCACCGTGCACCCCGACCCCAGGACTCCCGAGGAGCTGT GCTCACCGTGCACCCCGACCCAAGGACTCCCGAGGAGCTGT < 41bp 0.467964132570704 0.734716614096653 0.83922803 0.9100441 prediction 0.469433228193307 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101749610 chr9:101749611 synonymous SNV . 0 22 hm5C_associated_SNPs_113228 0 0 0 0 2 COL15A1 chr9:101749650 5'GT 101749650 Upstream 40bp
chr4 166248829 166248829 1 + C A rs143324153 166248828 + 166248808 166248848 41 GCCTGGCCCACCCGGCTCCACCCCCAAGCCAGGCGAGGCAG GCCTGGCCCACCCGGCTCCACACCCAAGCCAGGCGAGGCAG < 41bp 0.498356875432084 0.734714128834621 0.05539897 0.039827436 prediction 0.469428257669242 Functional Gain - MSMO1 ENSG00000052802 UTR5 Human protein_coding chr4:166248828 chr4:166248829 . . 0 22 hm5C_associated_SNPs_113229 0 0 0 0 1 MSMO1 chr4:166248916 5'GT 166248916 Upstream 88bp
chr1 36767165 36767165 1 + C T UCEC 36767164 + 36767144 36767184 41 ATTGCAATAGCAGTTTCGAGCCAGAGGAAGAGGCTGGGGCA ATTGCAATAGCAGTTTCGAGCTAGAGGAAGAGGCTGGGGCA < 41bp 0.552863382779838 0.787577415401703 0.902232 0.42033774 prediction 0.469428065243728 Functional Gain - THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36767164 chr1:36767165 synonymous SNV . 0 22 hm5C_associated_SNPs_113230 0 0 1 0 1 THRAP3 chr1:36767154 3'AG 36767154 Downstream 12bp
chr12 132404096 132404096 1 + C A rs543744479 132404095 + 132404075 132404115 41 CAAAGTGCCATCGACCAGATCCGGGCCGGCAAGCTCTGCCT CAAAGTGCCATCGACCAGATCAGGGCCGGCAAGCTCTGCCT < 41bp 0.557777933345567 0.792478346740438 0.88316417 0.92153543 prediction 0.469400826789742 Functional Gain - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132404095 chr12:132404096 synonymous SNV . 0 22 hm5C_associated_SNPs_113231 0 0 1 0 1 ULK1 chr12:132404017 3'AG 132404017 Downstream 80bp
chr19 30303617 30303617 1 + C A rs139551337 30303616 + 30303596 30303636 41 GGATGCGAAGGAGCGGGACACCATGAAGGAGGACGGCGGCG GGATGCGAAGGAGCGGGACACAATGAAGGAGGACGGCGGCG < 41bp 0.477315562546838 0.734695976456763 0.35098073 0.7497772 prediction 0.469391952913526 Functional Gain - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30303616 chr19:30303617 synonymous SNV . 0 22 hm5C_associated_SNPs_113233 0 0 1 0 2 CCNE1 chr19:30303596 3'AG 30303596 Downstream 22bp
chr19 30303617 30303617 1 + C A rs139551337 30303616 + 30303596 30303636 41 GGATGCGAAGGAGCGGGACACCATGAAGGAGGACGGCGGCG GGATGCGAAGGAGCGGGACACAATGAAGGAGGACGGCGGCG < 41bp 0.477315562546838 0.734695976456763 0.35098073 0.7497772 prediction 0.469391952913526 Functional Gain - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30303616 chr19:30303617 synonymous SNV . 0 22 hm5C_associated_SNPs_113233 0 0 1 0 2 CCNE1 chr19:30303683 5'GT 30303683 Upstream 67bp
chr17 691271 691271 1 + C A COAD 691267 + 691247 691287 41 AGACTCAGCTTCAGCATTCACTGCCTTTATTATTGATTTGT AGACTCAGCTTCAGCATTCACTGCATTTATTATTGATTTGT < 41bp 0.302678576162976 0.734695064160368 0.020448178 0.05693835 prediction 0.469390128320735 Functional Gain - MRM3 ENSG00000171861 CDS Human protein_coding chr17:691267 chr17:691271 nonsynonymous SNV 0.963 4 25 hm5C_associated_SNPs_113235 0 0 1 0 1 MRM3 chr17:691205 3'AG 691205 Downstream 67bp
chr13 100637663 100637663 1 + C T rs182192729 100637662 + 100637642 100637682 41 CACGCCCCCGGGGCTGGTGTCCCCCAGCGCCGAGCCCCAGA CACGCCCCCGGGGCTGGTGTCTCCCAGCGCCGAGCCCCAGA < 41bp 0.492288121093749 0.734692408571898 0.101257 0.21068686 prediction 0.469384817143797 Functional Gain - ZIC2 ENSG00000043355 CDS Human protein_coding chr13:100637662 chr13:100637663 synonymous SNV . 0 22 hm5C_associated_SNPs_113236 1 0 0 0 1 ZIC2 chr13:100637577 3'AG 100637577 Downstream 87bp
chr11 117152949 117152949 1 + C A COAD 117152948 + 117152928 117152968 41 GTAGACAAACTGGAGAAGATCCTGGAGAAGCTGCTGACCCG GTAGACAAACTGGAGAAGATCATGGAGAAGCTGCTGACCCG < 41bp 0.476140681105366 0.734686350740608 0.8672222 0.8901856 prediction 0.469372701481215 Functional Gain - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152948 chr11:117152949 nonsynonymous SNV 0.994 2 22 hm5C_associated_SNPs_113239 0 0 1 0 1 RNF214 chr11:117152986 5'GT 117152986 Upstream 38bp
chr1 87805252 87805252 1 + C A LUAD 87805248 + 87805228 87805268 41 AAATAGCGGTGCTTGCAGCGCTTGCGGACAGTCGATTCCTG AAATAGCGGTGCTTGCAGCGCTTGAGGACAGTCGATTCCTG < 41bp 0.316195905250266 0.734679849024068 0.31854573 0.29221568 prediction 0.469359698048137 Functional Gain - LMO4 ENSG00000143013 CDS Human protein_coding chr1:87805248 chr1:87805252 stopgain 0.469 1 25 hm5C_associated_SNPs_113241 0 0 1 0 2 LMO4 chr1:87805219 3'AG 87805219 Downstream 34bp
chr1 87805252 87805252 1 + C A LUAD 87805248 + 87805228 87805268 41 AAATAGCGGTGCTTGCAGCGCTTGCGGACAGTCGATTCCTG AAATAGCGGTGCTTGCAGCGCTTGAGGACAGTCGATTCCTG < 41bp 0.316195905250266 0.734679849024068 0.31854573 0.29221568 prediction 0.469359698048137 Functional Gain - LMO4 ENSG00000143013 CDS Human protein_coding chr1:87805248 chr1:87805252 stopgain 0.469 1 25 hm5C_associated_SNPs_113241 0 0 1 0 2 LMO4 chr1:87805315 5'GT 87805315 Upstream 64bp
chr7 75933167 75933167 1 + T G LUSC 75933165 + 75933145 75933185 41 CATGGCTACATCTCCCGGTGCTTCACGCGGAAATACACGTG CATGGCTACATCTCCCGGTGCTGCACGCGGAAATACACGTG < 41bp 0.397977220034269 0.734675040192044 0.761675 0.5952515 prediction 0.469350080384087 Functional Gain - HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933165 chr7:75933167 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_113243 0 0 1 0 2 HSPB1 chr7:75933119 3'AG 75933119 Downstream 49bp
chr7 75933167 75933167 1 + T G LUSC 75933165 + 75933145 75933185 41 CATGGCTACATCTCCCGGTGCTTCACGCGGAAATACACGTG CATGGCTACATCTCCCGGTGCTGCACGCGGAAATACACGTG < 41bp 0.397977220034269 0.734675040192044 0.761675 0.5952515 prediction 0.469350080384087 Functional Gain - HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933165 chr7:75933167 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_113243 0 0 1 0 2 HSPB1 chr7:75933182 5'GT 75933182 Upstream 16bp
chr19 17895672 17895672 1 + C T SKCM 17895671 + 17895651 17895691 41 CCCACACCACTCACGAACGTCCAGATCCTGCTGCCTGTGGG CCCACACCACTCACGAACGTCTAGATCCTGCTGCCTGTGGG < 41bp 0.468099770843216 0.734670482668656 0.134725 0.10050529 prediction 0.469340965337313 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17895671 chr19:17895672 stopgain 0.592 0 22 hm5C_associated_SNPs_113244 0 0 0 0 1 FCHO1 chr19:17895733 5'GT 17895733 Upstream 62bp
chr6 26459791 26459791 1 + C G rs72500817 26459790 + 26459770 26459810 41 GTTACGCTGCCATCTGTCACCCGAGAAAAATGCTGAGGACA GTTACGCTGCCATCTGTCACCGGAGAAAAATGCTGAGGACA < 41bp 0.408238258540175 0.734670441399311 0.8361067 0.8958328 prediction 0.469340882798623 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26459790 chr6:26459791 synonymous SNV . 0 22 hm5C_associated_SNPs_113245 0 0 1 0 1 BTN2A1 chr6:26459709 3'AG 26459709 Downstream 83bp
chr6 88210933 88210933 1 + C T GBM 88210932 + 88210912 88210952 41 TGCACTGTTTTAATGTTAAACCGGACACTCAGCAAATTACA TGCACTGTTTTAATGTTAAACTGGACACTCAGCAAATTACA < 41bp 0.51633386969251 0.750996666848152 0.036772907 0.030099541 prediction 0.469325594311284 Functional Gain - SLC35A1 ENSG00000164414 CDS Human protein_coding chr6:88210932 chr6:88210933 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_113246 0 0 1 1 2 SLC35A1 chr6:88210876 3'AG 88210876 Downstream 58bp
chr6 88210933 88210933 1 + C T GBM 88210932 + 88210912 88210952 41 TGCACTGTTTTAATGTTAAACCGGACACTCAGCAAATTACA TGCACTGTTTTAATGTTAAACTGGACACTCAGCAAATTACA < 41bp 0.51633386969251 0.750996666848152 0.036772907 0.030099541 prediction 0.469325594311284 Functional Gain - SLC35A1 ENSG00000164414 CDS Human protein_coding chr6:88210932 chr6:88210933 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_113246 0 0 1 1 2 SLC35A1 chr6:88211028 5'GT 88211028 Upstream 96bp
chr20 56138123 56138123 1 + C A BRCA 56138119 + 56138099 56138139 41 ACTGGCCCTGCAACCCGGAGCTGACGCTCATCGCCCACCTG ACTGGCCCTGCAACCCGGAGCTGAAGCTCATCGCCCACCTG < 41bp 0.316686566568377 0.73464833451721 0.13408378 0.39871043 prediction 0.469296669034419 Functional Gain - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56138119 chr20:56138123 nonsynonymous SNV 0.808 1 25 hm5C_associated_SNPs_113250 0 0 0 0 1 PCK1 chr20:56138084 3'AG 56138084 Downstream 40bp
chr22 29628258 29628258 1 + C T SKCM 29628257 + 29628237 29628277 41 CATTGCAGGTCCACAGGGCCCCCCAGGGAGCCCTGGCCGGG CATTGCAGGTCCACAGGGCCCTCCAGGGAGCCCTGGCCGGG < 41bp 0.564238451246408 0.798877565278816 0.093042165 0.918811 prediction 0.469278228064816 Functional Gain - EMID1 ENSG00000186998 CDS Human protein_coding chr22:29628257 chr22:29628258 synonymous SNV . 0 22 hm5C_associated_SNPs_113254 0 0 0 0 1 EMID1 chr22:29628245 3'AG 29628245 Downstream 14bp
chr18 9360030 9360030 1 + T G SKCM 9360027 + 9360007 9360047 41 CCTGCTGTAAGGAGTGCATGCTGTGTCTTGGGGCCCTTTGG CCTGCTGTAAGGAGTGCATGCTGGGTCTTGGGGCCCTTTGG < 41bp 0.654288044348691 0.888923764859263 0.42475197 0.8773917 prediction 0.469271441021145 Functional Gain - TWSG1 ENSG00000128791 CDS Human protein_coding chr18:9360027 chr18:9360030 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_113255 0 0 1 0 2 TWSG1 chr18:9359970 3'AG 9359970 Downstream 61bp
chr18 9360030 9360030 1 + T G SKCM 9360027 + 9360007 9360047 41 CCTGCTGTAAGGAGTGCATGCTGTGTCTTGGGGCCCTTTGG CCTGCTGTAAGGAGTGCATGCTGGGTCTTGGGGCCCTTTGG < 41bp 0.654288044348691 0.888923764859263 0.42475197 0.8773917 prediction 0.469271441021145 Functional Gain - TWSG1 ENSG00000128791 CDS Human protein_coding chr18:9360027 chr18:9360030 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_113255 0 0 1 0 2 TWSG1 chr18:9360069 5'GT 9360069 Upstream 40bp
chr17 66033600 66033600 1 + C T COAD 66033599 + 66033579 66033619 41 ACTTCTCCGCTGCAGGAAAACCGCAACAACCAGGTAAAAAA ACTTCTCCGCTGCAGGAAAACTGCAACAACCAGGTAAAAAA < 41bp 0.558483156563162 0.79311839615945 0.3701681 0.903246 prediction 0.469270479192576 Functional Gain - KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033599 chr17:66033600 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_113256 0 0 1 0 1 KPNA2 chr17:66033611 5'GT 66033611 Upstream 12bp
chr19 40480501 40480501 1 + C T rs11542840 40480500 + 40480480 40480520 41 GAAGCAGGAGGTGCGGGAGGCCGTGGAGCTCCCGCTCACGC GAAGCAGGAGGTGCGGGAGGCTGTGGAGCTCCCGCTCACGC < 41bp 0.489971917355805 0.734630869008795 0.30419147 0.38527733 prediction 0.46926173801759 Functional Gain - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40480500 chr19:40480501 synonymous SNV . 0 22 hm5C_associated_SNPs_113257 0 0 1 0 2 PSMC4 chr19:40480431 3'AG 40480431 Downstream 71bp
chr19 40480501 40480501 1 + C T rs11542840 40480500 + 40480480 40480520 41 GAAGCAGGAGGTGCGGGAGGCCGTGGAGCTCCCGCTCACGC GAAGCAGGAGGTGCGGGAGGCTGTGGAGCTCCCGCTCACGC < 41bp 0.489971917355805 0.734630869008795 0.30419147 0.38527733 prediction 0.46926173801759 Functional Gain - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40480500 chr19:40480501 synonymous SNV . 0 22 hm5C_associated_SNPs_113257 0 0 1 0 2 PSMC4 chr19:40480540 5'GT 40480540 Upstream 40bp
chr2 219301894 219301894 1 + C T rs34509505 219301893 + 219301873 219301913 41 CAACGAGGAGGAGAAGAAGGCCGCAGCAACCACTGCACAGG CAACGAGGAGGAGAAGAAGGCTGCAGCAACCACTGCACAGG < 41bp 0.570512381709382 0.805141219037006 0.13432363 0.1341562 prediction 0.469257674655248 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219301893 chr2:219301894 synonymous SNV . 0 22 hm5C_associated_SNPs_113259 0 0 1 0 1 VIL1 chr2:219301847 3'AG 219301847 Downstream 48bp
chr22 45821903 45821903 1 + C A UCEC 45821899 + 45821879 45821919 41 GACAACTTGGCCGAGATCACCAACCTCCTGCGTGGGGACCT GACAACTTGGCCGAGATCACCAACATCCTGCGTGGGGACCT < 41bp 0.309129072146178 0.734627616576155 0.2090151 0.121263266 prediction 0.46925523315231 Functional Gain - RIBC2 ENSG00000128408 CDS Human protein_coding chr22:45821899 chr22:45821903 nonsynonymous SNV 0.727 0 25 hm5C_associated_SNPs_113261 0 0 0 0 1 RIBC2 chr22:45821828 3'AG 45821828 Downstream 76bp
chr9 138440520 138440520 1 + C T SKCM 138440519 + 138440499 138440539 41 CTGCAGGGCCGTGCCGCTGTCCCCACCTTGGCTCACCTGGC CTGCAGGGCCGTGCCGCTGTCTCCACCTTGGCTCACCTGGC < 41bp 0.541553158308941 0.776163652328216 0.04092467 0.90596646 prediction 0.469220988038551 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138440519 chr9:138440520 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_113265 0 0 0 0 2 OBP2A chr9:138440489 3'AG 138440489 Downstream 32bp
chr9 138440520 138440520 1 + C T SKCM 138440519 + 138440499 138440539 41 CTGCAGGGCCGTGCCGCTGTCCCCACCTTGGCTCACCTGGC CTGCAGGGCCGTGCCGCTGTCTCCACCTTGGCTCACCTGGC < 41bp 0.541553158308941 0.776163652328216 0.04092467 0.90596646 prediction 0.469220988038551 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138440519 chr9:138440520 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_113265 0 0 0 0 2 OBP2A chr9:138440505 3'AG 138440505 Downstream 16bp
chr1 32680449 32680449 1 + C T UCEC 32680448 + 32680428 32680468 41 CCCTCTCCAAAGGAACCAGACCGAATTAAGCCATCTGCTTT CCCTCTCCAAAGGAACCAGACTGAATTAAGCCATCTGCTTT < 41bp 0.535445582608277 0.770055912664208 0.11386809 0.0643906 prediction 0.469220660111863 Functional Gain - DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32680448 chr1:32680449 stopgain 0.000 0 22 hm5C_associated_SNPs_113266 0 0 0 0 2 DCDC2B chr1:32680398 3'AG 32680398 Downstream 52bp
chr1 32680449 32680449 1 + C T UCEC 32680448 + 32680428 32680468 41 CCCTCTCCAAAGGAACCAGACCGAATTAAGCCATCTGCTTT CCCTCTCCAAAGGAACCAGACTGAATTAAGCCATCTGCTTT < 41bp 0.535445582608277 0.770055912664208 0.11386809 0.0643906 prediction 0.469220660111863 Functional Gain - DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32680448 chr1:32680449 stopgain 0.000 0 22 hm5C_associated_SNPs_113266 0 0 0 0 2 DCDC2B chr1:32680533 5'GT 32680533 Upstream 85bp
chr5 96322292 96322292 1 + A G HNSC 96322289 + 96322269 96322309 41 ACTTGTTCAGGATGAGTTTTCTGAGAGTGTGAAGATGAGCA ACTTGTTCAGGATGAGTTTTCTGGGAGTGTGAAGATGAGCA < 41bp 0.505824738522733 0.740414312030292 0.2611807 0.54418933 prediction 0.469179147015117 Functional Gain - LNPEP ENSG00000113441 CDS Human protein_coding chr5:96322289 chr5:96322292 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_113271 0 0 1 0 2 LNPEP chr5:96322243 3'AG 96322243 Downstream 50bp
chr5 96322292 96322292 1 + A G HNSC 96322289 + 96322269 96322309 41 ACTTGTTCAGGATGAGTTTTCTGAGAGTGTGAAGATGAGCA ACTTGTTCAGGATGAGTTTTCTGGGAGTGTGAAGATGAGCA < 41bp 0.505824738522733 0.740414312030292 0.2611807 0.54418933 prediction 0.469179147015117 Functional Gain - LNPEP ENSG00000113441 CDS Human protein_coding chr5:96322289 chr5:96322292 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_113271 0 0 1 0 2 LNPEP chr5:96322374 5'GT 96322374 Upstream 83bp
chr21 42821113 42821113 1 + T C rs2070229 42821111 + 42821091 42821131 41 AGAAATTTGAAAATCAGTATCGTGGTAGAGAGCTGCCAGGC AGAAATTTGAAAATCAGTATCGCGGTAGAGAGCTGCCAGGC < 41bp 0.45917706693203 0.734586611565203 0.92416644 0.91812885 prediction 0.469173223130406 Functional Gain - MX1 ENSG00000157601 CDS Human protein_coding chr21:42821111 chr21:42821113 synonymous SNV . 0 23 hm5C_associated_SNPs_113273 0 0 0 0 1 MX1 chr21:42821064 3'AG 42821064 Downstream 50bp
chr4 48027157 48027157 1 + T A PRAD 48027153 + 48027133 48027173 41 AGATCACAAATGTGTCACAGCTGCTGGCTTCTCCTGTGCTC AGATCACAAATGTGTCACAGCTGCAGGCTTCTCCTGTGCTC < 41bp 0.652530770407132 0.887116480439096 0.34001556 0.30020452 prediction 0.469171420063928 Functional Gain - NIPAL1 ENSG00000163293 CDS Human protein_coding chr4:48027153 chr4:48027157 nonsynonymous SNV 0.503 0 25 hm5C_associated_SNPs_113274 0 0 1 0 1 NIPAL1 chr4:48027085 3'AG 48027085 Downstream 73bp
chr19 4157245 4157245 1 + C T READ 4157244 + 4157224 4157264 41 ACTCTTGCTCCACCACAACCCCAGGGCCAGTGATCCAAGTA ACTCTTGCTCCACCACAACCCTAGGGCCAGTGATCCAAGTA < 41bp 0.50107061289531 0.7356553822055 0.5316274 0.546079 prediction 0.469169538620381 Functional Gain - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4157244 chr19:4157245 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_113275 0 0 0 0 1 CREB3L3 chr19:4157292 5'GT 4157292 Upstream 48bp
chr20 30414453 30414453 1 + C T LUSC 30414452 + 30414432 30414472 41 GTCATGAACCAGCTGAACCACCGCAATCTGATCCAGCTGTA GTCATGAACCAGCTGAACCACTGCAATCTGATCCAGCTGTA < 41bp 0.579827005230215 0.814400809347766 0.1600014 0.3103053 prediction 0.469147608235102 Functional Gain - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30414452 chr20:30414453 nonsynonymous SNV 0.990 2 22 hm5C_associated_SNPs_113277 1 0 1 0 2 MYLK2 chr20:30414408 3'AG 30414408 Downstream 46bp
chr20 30414453 30414453 1 + C T LUSC 30414452 + 30414432 30414472 41 GTCATGAACCAGCTGAACCACCGCAATCTGATCCAGCTGTA GTCATGAACCAGCTGAACCACTGCAATCTGATCCAGCTGTA < 41bp 0.579827005230215 0.814400809347766 0.1600014 0.3103053 prediction 0.469147608235102 Functional Gain - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30414452 chr20:30414453 nonsynonymous SNV 0.990 2 22 hm5C_associated_SNPs_113277 1 0 1 0 2 MYLK2 chr20:30414517 5'GT 30414517 Upstream 65bp
chr21 45500005 45500005 1 + C A UCEC 45500001 + 45499981 45500021 41 TTTGCCAGCCAGCCGTCAGACAGCCCAGGTAAGACCAGTTC TTTGCCAGCCAGCCGTCAGACAGCACAGGTAAGACCAGTTC < 41bp 0.31243773764137 0.734568007840228 0.2777087 0.24964708 prediction 0.469136015680456 Functional Gain - TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45500001 chr21:45500005 nonsynonymous SNV 0.107 0 25 hm5C_associated_SNPs_113280 0 0 1 0 1 TRAPPC10 chr21:45500008 5'GT 45500008 Upstream 4bp
chr2 37316823 37316823 1 + C T UCEC 37316822 + 37316802 37316842 41 TTGCCAATGCTAAGGCAAATCCGAGAAGCCCGTCGAAAAGA TTGCCAATGCTAAGGCAAATCTGAGAAGCCCGTCGAAAAGA < 41bp 0.497711410213992 0.734558297191111 0.2518193 0.17914921 prediction 0.469116594382221 Functional Gain - GPATCH11 ENSG00000152133 CDS Human protein_coding chr2:37316822 chr2:37316823 stopgain 1.000 1 22 hm5C_associated_SNPs_113281 0 0 1 0 1 GPATCH11 chr2:37316783 3'AG 37316783 Downstream 41bp
chr17 79769191 79769191 1 + C T rs61729093 79769190 + 79769170 79769210 41 CTGCTCCTCGCCTTGGCCATCCTGGGGGGCCTCAGGTAGGA CTGCTCCTCGCCTTGGCCATCTTGGGGGGCCTCAGGTAGGA < 41bp 0.510756794957745 0.745310222892537 0.8821924 0.8997623 prediction 0.469106855869585 Functional Gain - GCGR ENSG00000215644 CDS Human protein_coding chr17:79769190 chr17:79769191 synonymous SNV . 0 22 hm5C_associated_SNPs_113285 0 0 0 0 2 GCGR chr17:79769098 3'AG 79769098 Downstream 94bp
chr17 79769191 79769191 1 + C T rs61729093 79769190 + 79769170 79769210 41 CTGCTCCTCGCCTTGGCCATCCTGGGGGGCCTCAGGTAGGA CTGCTCCTCGCCTTGGCCATCTTGGGGGGCCTCAGGTAGGA < 41bp 0.510756794957745 0.745310222892537 0.8821924 0.8997623 prediction 0.469106855869585 Functional Gain - GCGR ENSG00000215644 CDS Human protein_coding chr17:79769190 chr17:79769191 synonymous SNV . 0 22 hm5C_associated_SNPs_113285 0 0 0 0 2 GCGR chr17:79769204 5'GT 79769204 Upstream 14bp
chr11 128638132 128638132 1 + T G UCEC 128638130 + 128638110 128638150 41 AATGGCCCCCCTCCTCCCAACATGACCACCAACGAGAGGAG AATGGCCCCCCTCCTCCCAACAGGACCACCAACGAGAGGAG < 41bp 0.375111829716359 0.734535453360087 0.05569446 0.3278423 prediction 0.469070906720173 Functional Gain - FLI1 ENSG00000151702 CDS Human protein_coding chr11:128638130 chr11:128638132 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_113286 0 0 0 0 1 FLI1 chr11:128638167 5'GT 128638167 Upstream 36bp
chr17 7186838 7186838 1 + C T UCEC 7186837 + 7186817 7186857 41 CGTGGCTGGGGAGGCAGGGGCCTGAGGGACCCAGCTCCATC CGTGGCTGGGGAGGCAGGGGCTTGAGGGACCCAGCTCCATC < 41bp 0.529060010957421 0.763592624325673 0.643803 0.4669719 prediction 0.469065226736505 Functional Gain - SLC2A4 ENSG00000181856 CDS Human protein_coding chr17:7186837 chr17:7186838 nonsynonymous SNV 0.925 2 22 hm5C_associated_SNPs_113287 0 0 0 0 1 SLC2A4 chr17:7186792 3'AG 7186792 Downstream 47bp
chr3 50251714 50251714 1 + C T UCEC 50251713 + 50251693 50251733 41 GGGCTGCTCCCGGTCATCACCCCCATGGCAGGCAACCAGAG GGGCTGCTCCCGGTCATCACCTCCATGGCAGGCAACCAGAG < 41bp 0.521012051298676 0.755543543019195 0.04586941 0.9670514 prediction 0.469062983441037 Functional Gain - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50251713 chr3:50251714 . 0.003 0 22 hm5C_associated_SNPs_113288 0 0 1 0 1 SLC38A3 chr3:50251733 5'GT 50251733 Upstream 20bp
chr6 161413046 161413046 1 + C A UCEC 161413045 + 161413025 161413065 41 CCATGGAGGAGCCGCCGCCACCGCCGCCGCCGCCACCACCG CCATGGAGGAGCCGCCGCCACAGCCGCCGCCGCCACCACCG < 41bp 0.515610491907016 0.750125094668921 0.35157585 0.41999716 prediction 0.469029205523809 Functional Gain - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161413045 chr6:161413046 nonsynonymous SNV 0.086 3 22 hm5C_associated_SNPs_113292 0 0 1 0 1 MAP3K4 chr6:161413115 5'GT 161413115 Upstream 70bp
chr15 40756083 40756083 1 + A G HNSC 40756080 + 40756060 40756100 41 GATGAGCCGGAGCCAGCCATCCGAAAGAGCTACCAGGCGGT GATGAGCCGGAGCCAGCCATCCGGAAGAGCTACCAGGCGGT < 41bp 0.530570447476502 0.765072667277057 0.4344024 0.8545444 prediction 0.469004439601109 Functional Gain - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40756080 chr15:40756083 synonymous SNV . 0 24 hm5C_associated_SNPs_113295 0 0 1 0 1 BAHD1 chr15:40756060 3'AG 40756060 Downstream 24bp
chr11 6281267 6281267 1 + C T rs1805000 6281266 + 6281246 6281286 41 AACAGCAGCAGTGTGGGCAACCTCAGCTGCGAGCCCCCTCG AACAGCAGCAGTGTGGGCAACTTCAGCTGCGAGCCCCCTCG < 41bp 0.490475526424052 0.734489772319828 0.2805081 0.7694752 prediction 0.468979544639656 Functional Gain - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6281266 chr11:6281267 nonsynonymous SNV 0.999 0 22 hm5C_associated_SNPs_113298 0 0 0 0 1 CCKBR chr11:6281309 5'GT 6281309 Upstream 43bp
chr2 3464042 3464042 1 + C T ESCA 3464041 + 3464021 3464061 41 TCTTACCTTGTAGCCTCTATCCGGCTGTGGAGGTCACGTCT TCTTACCTTGTAGCCTCTATCTGGCTGTGGAGGTCACGTCT < 41bp 0.494470077414765 0.73448870613744 0.94946074 0.93443334 prediction 0.468977412274879 Functional Gain - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3464041 chr2:3464042 nonsynonymous SNV 0.273 2 22 hm5C_associated_SNPs_113299 0 0 1 0 3 TRAPPC12 chr2:3464016 3'AG 3464016 Downstream 27bp
chr2 3464042 3464042 1 + C T ESCA 3464041 + 3464021 3464061 41 TCTTACCTTGTAGCCTCTATCCGGCTGTGGAGGTCACGTCT TCTTACCTTGTAGCCTCTATCTGGCTGTGGAGGTCACGTCT < 41bp 0.494470077414765 0.73448870613744 0.94946074 0.93443334 prediction 0.468977412274879 Functional Gain - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3464041 chr2:3464042 nonsynonymous SNV 0.273 2 22 hm5C_associated_SNPs_113299 0 0 1 0 3 TRAPPC12 chr2:3464034 3'AG 3464034 Downstream 9bp
chr2 3464042 3464042 1 + C T ESCA 3464041 + 3464021 3464061 41 TCTTACCTTGTAGCCTCTATCCGGCTGTGGAGGTCACGTCT TCTTACCTTGTAGCCTCTATCTGGCTGTGGAGGTCACGTCT < 41bp 0.494470077414765 0.73448870613744 0.94946074 0.93443334 prediction 0.468977412274879 Functional Gain - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3464041 chr2:3464042 nonsynonymous SNV 0.273 2 22 hm5C_associated_SNPs_113299 0 0 1 0 3 TRAPPC12 chr2:3464107 5'GT 3464107 Upstream 66bp
chr11 61727438 61727438 1 + C G rs1801390 61727437 + 61727417 61727457 41 GGACATGTACTGGAATAAGCCCGAGCCACAGCCCCCCTACA GGACATGTACTGGAATAAGCCGGAGCCACAGCCCCCCTACA < 41bp 0.427757570673504 0.734486205743746 0.4193384 0.8360801 prediction 0.468972411487491 Functional Gain - BEST1 ENSG00000167995 CDS Human other chr11:61727437 chr11:61727438 nonsynonymous SNV 0.031 2 22 hm5C_associated_SNPs_113302 0 0 0 0 2 BEST1 chr11:61727364 3'AG 61727364 Downstream 75bp
chr11 61727438 61727438 1 + C G rs1801390 61727437 + 61727417 61727457 41 GGACATGTACTGGAATAAGCCCGAGCCACAGCCCCCCTACA GGACATGTACTGGAATAAGCCGGAGCCACAGCCCCCCTACA < 41bp 0.427757570673504 0.734486205743746 0.4193384 0.8360801 prediction 0.468972411487491 Functional Gain - BEST1 ENSG00000167995 CDS Human protein_coding chr11:61727437 chr11:61727438 nonsynonymous SNV 0.031 2 22 hm5C_associated_SNPs_113302 0 0 0 0 2 BEST1 chr11:61727515 5'GT 61727515 Upstream 78bp
chr3 140997283 140997283 1 + C T SKCM 140997282 + 140997262 140997302 41 CGGAGCCCCCTGTGACAGACCCCGTTTATGAAGCTCTTTTG CGGAGCCCCCTGTGACAGACCTCGTTTATGAAGCTCTTTTG < 41bp 0.569554261346943 0.804033171586104 0.010323077 0.029819667 prediction 0.468957820478323 Functional Gain - PXYLP1 ENSG00000155893 CDS Human protein_coding chr3:140997282 chr3:140997283 nonsynonymous SNV 0.625 4 22 hm5C_associated_SNPs_113304 0 0 1 0 2 PXYLP1 chr3:140997184 3'AG 140997184 Downstream 100bp
chr3 140997283 140997283 1 + C T SKCM 140997282 + 140997262 140997302 41 CGGAGCCCCCTGTGACAGACCCCGTTTATGAAGCTCTTTTG CGGAGCCCCCTGTGACAGACCTCGTTTATGAAGCTCTTTTG < 41bp 0.569554261346943 0.804033171586104 0.010323077 0.029819667 prediction 0.468957820478323 Functional Gain - PXYLP1 ENSG00000155893 CDS Human protein_coding chr3:140997282 chr3:140997283 nonsynonymous SNV 0.625 4 22 hm5C_associated_SNPs_113304 0 0 1 0 2 PXYLP1 chr3:140997342 5'GT 140997342 Upstream 60bp
chr4 5731079 5731079 1 + A G STAD 5731076 + 5731056 5731096 41 GCAATATCACAGCATTCGCCCTGAAGGCCAAAGTCATCTAC GCAATATCACAGCATTCGCCCTGGAGGCCAAAGTCATCTAC < 41bp 0.489623934446166 0.734470695009881 0.0654383 0.25132972 prediction 0.468941390019763 Functional Gain - EVC ENSG00000072840 CDS Human protein_coding chr4:5731076 chr4:5731079 nonsynonymous SNV 0.781 3 24 hm5C_associated_SNPs_113309 0 0 0 0 2 EVC chr4:5731034 3'AG 5731034 Downstream 46bp
chr4 5731079 5731079 1 + A G STAD 5731076 + 5731056 5731096 41 GCAATATCACAGCATTCGCCCTGAAGGCCAAAGTCATCTAC GCAATATCACAGCATTCGCCCTGGAGGCCAAAGTCATCTAC < 41bp 0.489623934446166 0.734470695009881 0.0654383 0.25132972 prediction 0.468941390019763 Functional Gain - EVC ENSG00000072840 CDS Human protein_coding chr4:5731076 chr4:5731079 nonsynonymous SNV 0.781 3 24 hm5C_associated_SNPs_113309 0 0 0 0 2 EVC chr4:5731117 5'GT 5731117 Upstream 39bp
chr6 25450209 25450209 1 + A G UCEC 25450206 + 25450186 25450226 41 GTGGGACAGCCAGACCGTGGCTGAGCAGGGCCCCTGTGGTG GTGGGACAGCCAGACCGTGGCTGGGCAGGGCCCCTGTGGTG < 41bp 0.490161527923635 0.734467499374177 0.15590054 0.41106167 prediction 0.468934998748354 Functional Gain - CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25450206 chr6:25450209 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_113310 0 0 0 0 2 CARMIL1 chr6:25450126 3'AG 25450126 Downstream 84bp
chr6 25450209 25450209 1 + A G UCEC 25450206 + 25450186 25450226 41 GTGGGACAGCCAGACCGTGGCTGAGCAGGGCCCCTGTGGTG GTGGGACAGCCAGACCGTGGCTGGGCAGGGCCCCTGTGGTG < 41bp 0.490161527923635 0.734467499374177 0.15590054 0.41106167 prediction 0.468934998748354 Functional Gain - CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25450206 chr6:25450209 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_113310 0 0 0 0 2 CARMIL1 chr6:25450223 5'GT 25450223 Upstream 15bp
chr11 62546422 62546422 1 + C T LUSC 62546421 + 62546401 62546441 41 GTGCTGTGCTAGGGGATGATCCGCAACTGATGAAGGTGAGC GTGCTGTGCTAGGGGATGATCTGCAACTGATGAAGGTGAGC < 41bp 0.479639803298337 0.734463453859803 0.4765359 0.5368307 prediction 0.468926907719606 Functional Gain - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62546421 chr11:62546422 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_113313 0 0 1 0 2 TAF6L chr11:62546341 3'AG 62546341 Downstream 82bp
chr11 62546422 62546422 1 + C T LUSC 62546421 + 62546401 62546441 41 GTGCTGTGCTAGGGGATGATCCGCAACTGATGAAGGTGAGC GTGCTGTGCTAGGGGATGATCTGCAACTGATGAAGGTGAGC < 41bp 0.479639803298337 0.734463453859803 0.4765359 0.5368307 prediction 0.468926907719606 Functional Gain - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62546421 chr11:62546422 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_113313 0 0 1 0 2 TAF6L chr11:62546435 5'GT 62546435 Upstream 14bp
chr5 14582058 14582058 1 + C G rs116803888 14582054 + 14582034 14582074 41 AGGGAGCGGGAGCGGTCTGGCGCTCCCGCCGCAGGTGAGCC AGGGAGCGGGAGCGGTCTGGCGCTGCCGCCGCAGGTGAGCC < 41bp 0.57506838321264 0.809528124818013 0.16585824 0.15828314 prediction 0.468919483210745 Functional Gain - FAM105A ENSG00000145569 CDS Human protein_coding chr5:14582054 chr5:14582058 nonsynonymous SNV 0.055 0 25 hm5C_associated_SNPs_113315 0 0 0 0 1 FAM105A chr5:14582067 5'GT 14582067 Upstream 10bp
chr5 637890 637890 1 + A G LIHC 637887 + 637867 637907 41 CTTGTCTCAGCCTGAGGCCTCGGAGACTGAGGAGCAGAGGT CTTGTCTCAGCCTGAGGCCTCGGGGACTGAGGAGCAGAGGT < 41bp 0.521716181171169 0.756167987107457 0.91720337 0.9300532 prediction 0.468903611872577 Functional Gain - CEP72 ENSG00000112877 CDS Human protein_coding chr5:637887 chr5:637890 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_113318 0 0 1 0 1 CEP72 chr5:637933 5'GT 637933 Upstream 44bp
chr12 130847606 130847606 1 + A G GBM 130847603 + 130847583 130847623 41 ATCATCGTGTACCGCGATGGCGTAGGAGACGGCCAGCTGAA ATCATCGTGTACCGCGATGGCGTGGGAGACGGCCAGCTGAA < 41bp 0.529205222997228 0.76365553941566 0.43508774 0.8385837 prediction 0.468900632836865 Functional Gain - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130847603 chr12:130847606 synonymous SNV . 0 24 hm5C_associated_SNPs_113319 0 0 0 0 2 PIWIL1 chr12:130847536 3'AG 130847536 Downstream 71bp
chr12 130847606 130847606 1 + A G GBM 130847603 + 130847583 130847623 41 ATCATCGTGTACCGCGATGGCGTAGGAGACGGCCAGCTGAA ATCATCGTGTACCGCGATGGCGTGGGAGACGGCCAGCTGAA < 41bp 0.529205222997228 0.76365553941566 0.43508774 0.8385837 prediction 0.468900632836865 Functional Gain - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130847603 chr12:130847606 synonymous SNV . 0 24 hm5C_associated_SNPs_113319 0 0 0 0 2 PIWIL1 chr12:130847689 5'GT 130847689 Upstream 84bp
chr3 14905750 14905750 1 + C A LUAD 14905749 + 14905729 14905769 41 GAGGACAGTGCTTCAAGAGACCCCAGTGTCACCCACAAGGT GAGGACAGTGCTTCAAGAGACACCAGTGTCACCCACAAGGT < 41bp 0.477444865719122 0.734446376406543 0.29045478 0.32195044 prediction 0.468892752813086 Functional Gain - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14905749 chr3:14905750 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_113321 0 0 0 0 1 FGD5 chr3:14905767 5'GT 14905767 Upstream 18bp
chr2 219293043 219293043 1 + C A LUAD 219293039 + 219293019 219293059 41 CAGTGGAATGGACCGGAAAGCACCCGTATGGAGAGACTCAG CAGTGGAATGGACCGGAAAGCACCAGTATGGAGAGACTCAG < 41bp 0.308475536109321 0.734440515871946 0.103499204 0.17675385 prediction 0.468881031743893 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219293039 chr2:219293043 nonsynonymous SNV 0.910 0 25 hm5C_associated_SNPs_113324 0 0 1 0 1 VIL1 chr2:219292950 3'AG 219292950 Downstream 94bp
chr11 65480859 65480859 1 + C T UCEC 65480858 + 65480838 65480878 41 GCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGC GCGGGAAGACCTTGCCAATCCTGGTCCAGATCACACTCCGC < 41bp 0.503442643220615 0.737877479113048 0.48367116 0.68823874 prediction 0.468869671784865 Functional Gain - KAT5 ENSG00000172977 CDS Human protein_coding chr11:65480858 chr11:65480859 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_113326 0 0 1 0 1 KAT5 chr11:65480819 3'AG 65480819 Downstream 41bp
chr11 61254513 61254513 1 + C T STAD 61254512 + 61254492 61254532 41 ACAAACGTTGCCCTGCTTGGCCGGGAGACTGTGGGGAAAAA ACAAACGTTGCCCTGCTTGGCTGGGAGACTGTGGGGAAAAA < 41bp 0.518609154803584 0.753040711664089 0.537942 0.3920097 prediction 0.468863113721009 Functional Gain - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61254512 chr11:61254513 nonsynonymous SNV 0.928 3 22 hm5C_associated_SNPs_113329 0 0 0 0 2 PPP1R32 chr11:61254420 3'AG 61254420 Downstream 94bp
chr11 61254513 61254513 1 + C T STAD 61254512 + 61254492 61254532 41 ACAAACGTTGCCCTGCTTGGCCGGGAGACTGTGGGGAAAAA ACAAACGTTGCCCTGCTTGGCTGGGAGACTGTGGGGAAAAA < 41bp 0.518609154803584 0.753040711664089 0.537942 0.3920097 prediction 0.468863113721009 Functional Gain - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61254512 chr11:61254513 nonsynonymous SNV 0.928 3 22 hm5C_associated_SNPs_113329 0 0 0 0 2 PPP1R32 chr11:61254533 5'GT 61254533 Upstream 21bp
chr2 74435842 74435842 1 + C A OV 74435838 + 74435818 74435858 41 TGGGGTGTGTGGGAAATAATCAAGCGAACTGGTAGGTATAT TGGGGTGTGTGGGAAATAATCAAGAGAACTGGTAGGTATAT < 41bp 0.693593403775161 0.928021278196169 0.9348633 0.9383862 prediction 0.468855748842016 Functional Gain - MTHFD2 ENSG00000065911 CDS Human protein_coding chr2:74435838 chr2:74435842 synonymous SNV . 0 25 hm5C_associated_SNPs_113330 0 0 1 0 1 MTHFD2 chr2:74435848 5'GT 74435848 Upstream 7bp
chr17 42249669 42249669 1 + C A LUAD 42249668 + 42249648 42249688 41 CTTTGCACCTCTGCACGATCCCCGAGTCCTTGCAGTAGGTG CTTTGCACCTCTGCACGATCCACGAGTCCTTGCAGTAGGTG < 41bp 0.579320395430426 0.813743782087725 0.27550632 0.1905891 prediction 0.468846773314597 Functional Gain - ASB16 ENSG00000161664 CDS Human protein_coding chr17:42249668 chr17:42249669 nonsynonymous SNV 0.058 3 22 hm5C_associated_SNPs_113331 0 0 0 0 1 ASB16 chr17:42249681 5'GT 42249681 Upstream 13bp
chr14 55034829 55034829 1 + C G rs200235203 55034828 + 55034808 55034848 41 CGAACGCGAGGCCAACAGCCCCGGTAAGTGTGCGGCGGCCG CGAACGCGAGGCCAACAGCCCGGGTAAGTGTGCGGCGGCCG < 41bp 0.433578437621979 0.734420879192353 0.5216329 0.88583934 prediction 0.468841758384707 Functional Gain - SAMD4A ENSG00000020577 CDS Human protein_coding chr14:55034828 chr14:55034829 synonymous SNV . 0 22 hm5C_associated_SNPs_113332 0 0 0 0 1 SAMD4A chr14:55034830 5'GT 55034830 Upstream 2bp
chr20 60348120 60348120 1 + T A LUAD 60348116 + 60348096 60348136 41 CTCCGCCTCCGAAGGACACCCTGCTGCCGTGGCCCCAGCAC CTCCGCCTCCGAAGGACACCCTGCAGCCGTGGCCCCAGCAC < 41bp 0.422532464002896 0.734416732344011 0.22378513 0.317065 prediction 0.468833464688022 Functional Gain - CDH4 ENSG00000179242 CDS Human protein_coding chr20:60348116 chr20:60348120 nonsynonymous SNV 0.100 1 25 hm5C_associated_SNPs_113335 0 0 0 0 1 CDH4 chr20:60348059 3'AG 60348059 Downstream 62bp
chr2 69969280 69969280 1 + C G rs544984620 69969276 + 69969256 69969296 41 TGAGTAGGGTGTGACCTCCGCAGCCGCAGAGGAGGAGCGCA TGAGTAGGGTGTGACCTCCGCAGCGGCAGAGGAGGAGCGCA < 41bp 0.605165657035599 0.839573987026426 0.37715834 0.4360806 prediction 0.468816659981654 Functional Gain - ANXA4 ENSG00000196975 UTR5 Human protein_coding chr2:69969276 chr2:69969280 . . 0 25 hm5C_associated_SNPs_113337 0 0 1 0 1 ANXA4 chr2:69969307 5'GT 69969307 Upstream 28bp
chr1 161641190 161641190 1 + C T UCEC 161641189 + 161641169 161641209 41 CTCTGCCCCTCAGCAGCTCCCCCAAAGGCTGTGCTGAAACT CTCTGCCCCTCAGCAGCTCCCTCAAAGGCTGTGCTGAAACT < 41bp 0.467690499612859 0.7344043130927 0.21040088 0.24639487 prediction 0.4688086261854 Functional Gain - FCGR2B ENSG00000072694 CDS Human protein_coding chr1:161641189 chr1:161641190 nonsynonymous SNV 0.019 2 22 hm5C_associated_SNPs_113338 0 0 0 0 2 FCGR2B chr1:161641182 3'AG 161641182 Downstream 9bp
chr1 161641190 161641190 1 + C T UCEC 161641189 + 161641169 161641209 41 CTCTGCCCCTCAGCAGCTCCCCCAAAGGCTGTGCTGAAACT CTCTGCCCCTCAGCAGCTCCCTCAAAGGCTGTGCTGAAACT < 41bp 0.467690499612859 0.7344043130927 0.21040088 0.24639487 prediction 0.4688086261854 Functional Gain - FCGR2B ENSG00000072694 CDS Human protein_coding chr1:161641189 chr1:161641190 nonsynonymous SNV 0.019 2 22 hm5C_associated_SNPs_113338 0 0 0 0 2 FCGR2B chr1:161641185 3'AG 161641185 Downstream 6bp
chr5 3600372 3600372 1 + C A LIHC 3600371 + 3600351 3600391 41 TCCGCAGCAGCCCCACGCTCCCAGGTACAGCTCCAGGCCGC TCCGCAGCAGCCCCACGCTCCAAGGTACAGCTCCAGGCCGC < 41bp 0.556749987238914 0.791149121219725 0.83893716 0.8726437 prediction 0.468798267961623 Functional Gain - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3600371 chr5:3600372 nonsynonymous SNV 0.033 0 22 hm5C_associated_SNPs_113341 0 0 0 0 1 IRX1 chr5:3600374 5'GT 3600374 Upstream 3bp
chr1 158063224 158063224 1 + C A PRAD 158063220 + 158063200 158063240 41 GCCTTGGTATTCTTCCTCTACCGGCGCCGCAAAGGCAGTGA GCCTTGGTATTCTTCCTCTACCGGAGCCGCAAAGGCAGTGA < 41bp 0.320942870549449 0.734392642134747 0.27740508 0.60781175 prediction 0.468785284269494 Functional Gain - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063220 chr1:158063224 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_113343 0 0 0 0 2 KIRREL chr1:158063129 3'AG 158063129 Downstream 96bp
chr1 158063224 158063224 1 + C A PRAD 158063220 + 158063200 158063240 41 GCCTTGGTATTCTTCCTCTACCGGCGCCGCAAAGGCAGTGA GCCTTGGTATTCTTCCTCTACCGGAGCCGCAAAGGCAGTGA < 41bp 0.320942870549449 0.734392642134747 0.27740508 0.60781175 prediction 0.468785284269494 Functional Gain - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063220 chr1:158063224 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_113343 0 0 0 0 2 KIRREL chr1:158063236 5'GT 158063236 Upstream 13bp
chrX 69460011 69460011 1 + A G UCEC 69460008 + 69459988 69460028 41 GGGGAGCCTCTGCCACTGCCCCAAATTGAAAAGCCAAGCCA GGGGAGCCTCTGCCACTGCCCCAGATTGAAAAGCCAAGCCA < 41bp 0.51857240184181 0.752947850368992 0.7865445 0.63354206 prediction 0.468750897054364 Functional Gain - AWAT1 ENSG00000204195 CDS Human protein_coding chrX:69460008 chrX:69460011 synonymous SNV . 0 24 hm5C_associated_SNPs_113347 0 0 0 0 1 AWAT1 chrX:69459986 3'AG 69459986 Downstream 26bp
chr7 5232794 5232794 1 + T G UCEC 5232791 + 5232771 5232811 41 GCAGCTGGTCTTGGCCGTCGCGCTGTTGTCTGGTTAGTTCC GCAGCTGGTCTTGGCCGTCGCGCGGTTGTCTGGTTAGTTCC < 41bp 0.359836639294252 0.734367241329997 0.1650655 0.7528136 prediction 0.468734482659993 Functional Gain - WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5232791 chr7:5232794 synonymous SNV . 0 24 hm5C_associated_SNPs_113350 0 0 0 0 2 WIPI2 chr7:5232749 3'AG 5232749 Downstream 46bp
chr7 5232794 5232794 1 + T G UCEC 5232791 + 5232771 5232811 41 GCAGCTGGTCTTGGCCGTCGCGCTGTTGTCTGGTTAGTTCC GCAGCTGGTCTTGGCCGTCGCGCGGTTGTCTGGTTAGTTCC < 41bp 0.359836639294252 0.734367241329997 0.1650655 0.7528136 prediction 0.468734482659993 Functional Gain - WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5232791 chr7:5232794 synonymous SNV . 0 24 hm5C_associated_SNPs_113350 0 0 0 0 2 WIPI2 chr7:5232802 5'GT 5232802 Upstream 9bp
chr12 101876625 101876625 1 + T G LUAD 101876623 + 101876603 101876643 41 ATTCATCAATCTCTGCAGAACATAACTGAAAACCAGCTGGT ATTCATCAATCTCTGCAGAACAGAACTGAAAACCAGCTGGT < 41bp 0.39772954778702 0.734362453396664 0.0767135 0.19029588 prediction 0.468724906793328 Functional Gain - SPIC ENSG00000166211 CDS Human protein_coding chr12:101876623 chr12:101876625 nonsynonymous SNV 0.176 0 23 hm5C_associated_SNPs_113352 0 0 0 0 2 SPIC chr12:101876570 3'AG 101876570 Downstream 56bp
chr12 101876625 101876625 1 + T G LUAD 101876623 + 101876603 101876643 41 ATTCATCAATCTCTGCAGAACATAACTGAAAACCAGCTGGT ATTCATCAATCTCTGCAGAACAGAACTGAAAACCAGCTGGT < 41bp 0.39772954778702 0.734362453396664 0.0767135 0.19029588 prediction 0.468724906793328 Functional Gain - SPIC ENSG00000166211 CDS Human protein_coding chr12:101876623 chr12:101876625 nonsynonymous SNV 0.176 0 23 hm5C_associated_SNPs_113352 0 0 0 0 2 SPIC chr12:101876678 5'GT 101876678 Upstream 54bp
chr2 32865416 32865416 1 + T G HNSC 32865413 + 32865393 32865433 41 CTACAGCCTGACCTCGAAGCCTATACTACTGTTATTAGCAC CTACAGCCTGACCTCGAAGCCTAGACTACTGTTATTAGCAC < 41bp 0.358057186532725 0.734352980395758 0.015356213 0.007990152 prediction 0.468705960791516 Functional Gain - TTC27 ENSG00000018699 CDS Human protein_coding chr2:32865413 chr2:32865416 nonsynonymous SNV 0.020 1 24 hm5C_associated_SNPs_113354 0 0 1 0 2 TTC27 chr2:32865337 3'AG 32865337 Downstream 80bp
chr2 32865416 32865416 1 + T G HNSC 32865413 + 32865393 32865433 41 CTACAGCCTGACCTCGAAGCCTATACTACTGTTATTAGCAC CTACAGCCTGACCTCGAAGCCTAGACTACTGTTATTAGCAC < 41bp 0.358057186532725 0.734352980395758 0.015356213 0.007990152 prediction 0.468705960791516 Functional Gain - TTC27 ENSG00000018699 CDS Human protein_coding chr2:32865413 chr2:32865416 nonsynonymous SNV 0.020 1 24 hm5C_associated_SNPs_113354 0 0 1 0 2 TTC27 chr2:32865477 5'GT 32865477 Upstream 62bp
chr17 28889931 28889931 1 + C T HNSC 28889930 + 28889910 28889950 41 GAAACATGGGGACCTGCCACCCCCAGGTGGGCTCCAGTACC GAAACATGGGGACCTGCCACCTCCAGGTGGGCTCCAGTACC < 41bp 0.561118774259781 0.795471477354 0.08776 0.93713236 prediction 0.468705406188438 Functional Gain - TBC1D29 ENSG00000266733 CDS Human protein_coding chr17:28889930 chr17:28889931 nonsynonymous SNV 0.024 0 22 hm5C_associated_SNPs_113355 0 0 0 0 2 TBC1D29 chr17:28889887 3'AG 28889887 Downstream 45bp
chr17 28889931 28889931 1 + C T HNSC 28889930 + 28889910 28889950 41 GAAACATGGGGACCTGCCACCCCCAGGTGGGCTCCAGTACC GAAACATGGGGACCTGCCACCTCCAGGTGGGCTCCAGTACC < 41bp 0.561118774259781 0.795471477354 0.08776 0.93713236 prediction 0.468705406188438 Functional Gain - TBC1D29 ENSG00000266733 CDS Human protein_coding chr17:28889930 chr17:28889931 nonsynonymous SNV 0.024 0 22 hm5C_associated_SNPs_113355 0 0 0 0 2 TBC1D29 chr17:28889935 5'GT 28889935 Upstream 5bp
chr19 55106590 55106590 1 + A G rs36056143 55106587 + 55106567 55106607 41 GCCTACATCAAACCCACCCTCTCAGCTCTACCCAGCCCTGT GCCTACATCAAACCCACCCTCTCGGCTCTACCCAGCCCTGT < 41bp 0.531102865160654 0.765442209485678 0.04594326 0.08329883 prediction 0.468678688650048 Functional Gain - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55106587 chr19:55106590 synonymous SNV . 0 24 hm5C_associated_SNPs_113356 0 0 0 0 1 LILRA1 chr19:55106565 3'AG 55106565 Downstream 26bp
chr19 5757877 5757877 1 + C T SKCM 5757876 + 5757856 5757896 41 GATGGTGAGCAACCCCCACTCCCTGGGGTTCCAGGCCACCT GATGGTGAGCAACCCCCACTCTCTGGGGTTCCAGGCCACCT < 41bp 0.474804295028953 0.734338478627955 0.33655727 0.34329343 prediction 0.468676957255909 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5757876 chr19:5757877 synonymous SNV . 0 22 hm5C_associated_SNPs_113358 0 0 0 0 2 CATSPERD chr19:5757854 3'AG 5757854 Downstream 24bp
chr19 5757877 5757877 1 + C T SKCM 5757876 + 5757856 5757896 41 GATGGTGAGCAACCCCCACTCCCTGGGGTTCCAGGCCACCT GATGGTGAGCAACCCCCACTCTCTGGGGTTCCAGGCCACCT < 41bp 0.474804295028953 0.734338478627955 0.33655727 0.34329343 prediction 0.468676957255909 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5757876 chr19:5757877 synonymous SNV . 0 22 hm5C_associated_SNPs_113358 0 0 0 0 2 CATSPERD chr19:5757943 5'GT 5757943 Upstream 67bp
chr1 45220441 45220441 1 + C T SKCM 45220440 + 45220420 45220460 41 AGGAGTATGACAGTAGTTTTCCAAACTGGGAATTTGCCCGA AGGAGTATGACAGTAGTTTTCTAAACTGGGAATTTGCCCGA < 41bp 0.54510494235852 0.77943206292476 0.39848143 0.04423088 prediction 0.468654241132481 Functional Gain - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45220440 chr1:45220441 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_113361 0 0 1 0 2 KIF2C chr1:45220422 3'AG 45220422 Downstream 20bp
chr1 45220441 45220441 1 + C T SKCM 45220440 + 45220420 45220460 41 AGGAGTATGACAGTAGTTTTCCAAACTGGGAATTTGCCCGA AGGAGTATGACAGTAGTTTTCTAAACTGGGAATTTGCCCGA < 41bp 0.54510494235852 0.77943206292476 0.39848143 0.04423088 prediction 0.468654241132481 Functional Gain - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45220440 chr1:45220441 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_113361 0 0 1 0 2 KIF2C chr1:45220517 5'GT 45220517 Upstream 77bp
chr19 7671256 7671256 1 + A G UCEC 7671253 + 7671233 7671273 41 TGGCCCTGACCAGCTTGGAGCACAAGCTGCTTTTCTGGGTG TGGCCCTGACCAGCTTGGAGCACGAGCTGCTTTTCTGGGTG < 41bp 0.487054949016903 0.73432639791913 0.11081967 0.28410238 prediction 0.468652795838259 Functional Gain - CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7671253 chr19:7671256 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_113362 0 0 1 0 2 CAMSAP3 chr19:7671157 3'AG 7671157 Downstream 100bp
chr19 7671256 7671256 1 + A G UCEC 7671253 + 7671233 7671273 41 TGGCCCTGACCAGCTTGGAGCACAAGCTGCTTTTCTGGGTG TGGCCCTGACCAGCTTGGAGCACGAGCTGCTTTTCTGGGTG < 41bp 0.487054949016903 0.73432639791913 0.11081967 0.28410238 prediction 0.468652795838259 Functional Gain - CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7671253 chr19:7671256 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_113362 0 0 1 0 2 CAMSAP3 chr19:7671279 5'GT 7671279 Upstream 24bp
chr8 145583306 145583306 1 + T A rs566814350 145583302 + 145583282 145583322 41 GGTTGGAGCCTCCCCTCTTACGTCTCTGTGCTTGTGGCTCT GGTTGGAGCCTCCCCTCTTACGTCACTGTGCTTGTGGCTCT < 41bp 0.523796910107459 0.758116106142022 0.31208682 0.34030586 prediction 0.468638392069125 Functional Gain - SLC52A2 ENSG00000185803 CDS Human protein_coding chr8:145583302 chr8:145583306 nonsynonymous SNV 0.584 0 25 hm5C_associated_SNPs_113363 0 0 1 0 1 SLC52A2 chr8:145583283 3'AG 145583283 Downstream 24bp
chr12 106704917 106704917 1 + C T UCEC 106704916 + 106704896 106704936 41 CCAAGCGATTCTGATTCTTCCCGGTTTTCCGAAAGCATGGC CCAAGCGATTCTGATTCTTCCTGGTTTTCCGAAAGCATGGC < 41bp 0.4953993549274 0.734316339952495 0.24839482 0.20433015 prediction 0.46863267990499 Functional Gain - TCP11L2 ENSG00000166046 CDS Human protein_coding chr12:106704916 chr12:106704917 nonsynonymous SNV 0.922 2 22 hm5C_associated_SNPs_113364 0 0 1 0 1 TCP11L2 chr12:106704819 3'AG 106704819 Downstream 99bp
chr4 4766060 4766060 1 + C G rs181685257 4766059 + 4766039 4766079 41 TACCCAGGCCTAACTTACGTCCGGACTGACCAGCACGCCTT TACCCAGGCCTAACTTACGTCGGGACTGACCAGCACGCCTT < 41bp 0.621056927898228 0.855363327490486 0.5767121 0.8862107 prediction 0.468612799184517 Functional Gain - LOC101928279 ENSG00000247708;ENSG00000273396 intergenic Human other chr4:4766059 chr4:4766060 . . 0 22 hm5C_associated_SNPs_113366 0 0 0 0 1 LOC101928279 chr4:4765968 3'AG 4765968 Downstream 93bp
chr1 43649275 43649275 1 + C T SKCM 43649274 + 43649254 43649294 41 TTTTACAGGTGAGCTTCAGTCCACAGGATAACACTCAGGTG TTTTACAGGTGAGCTTCAGTCTACAGGATAACACTCAGGTG < 41bp 0.488038329874817 0.734298481898403 0.1999844 0.79378295 prediction 0.468596963796806 Functional Gain - CFAP57 ENSG00000243710 CDS Human protein_coding chr1:43649274 chr1:43649275 nonsynonymous SNV 0.976 4 22 hm5C_associated_SNPs_113367 0 0 0 0 1 CFAP57 chr1:43649262 3'AG 43649262 Downstream 14bp
chr5 133478495 133478495 1 + T C STAD 133478493 + 133478473 133478513 41 CTCAATGCCTTCATGCTGTACATGAAGGAGATGAGAGCCAA CTCAATGCCTTCATGCTGTACACGAAGGAGATGAGAGCCAA < 41bp 0.602404022718434 0.836699122444028 0.06198007 0.049482644 prediction 0.468590199451188 Functional Gain - TCF7 ENSG00000081059 CDS Human protein_coding chr5:133478493 chr5:133478495 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_113369 0 0 0 0 1 TCF7 chr5:133478412 3'AG 133478412 Downstream 84bp
chr16 30198233 30198233 1 + C A COAD 30198229 + 30198209 30198249 41 AAGCGTGTGGGCATTGTGGCCTGGCACACCACAGCCCAGAA AAGCGTGTGGGCATTGTGGCCTGGAACACCACAGCCCAGAA < 41bp 0.655044435430871 0.889336235670417 0.38833597 0.3575978 prediction 0.468583600479091 Functional Gain - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30198229 chr16:30198233 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_113370 0 0 0 0 2 CORO1A chr16:30198137 3'AG 30198137 Downstream 97bp
chr16 30198233 30198233 1 + C A COAD 30198229 + 30198209 30198249 41 AAGCGTGTGGGCATTGTGGCCTGGCACACCACAGCCCAGAA AAGCGTGTGGGCATTGTGGCCTGGAACACCACAGCCCAGAA < 41bp 0.655044435430871 0.889336235670417 0.38833597 0.3575978 prediction 0.468583600479091 Functional Gain - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30198229 chr16:30198233 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_113370 0 0 0 0 2 CORO1A chr16:30198266 5'GT 30198266 Upstream 34bp
chr21 44437070 44437070 1 + C T GBM 44437069 + 44437049 44437089 41 GCCCTCAGGGAATTGTGGTGCCGGCGTCCGCGCTGCAGCAG GCCCTCAGGGAATTGTGGTGCTGGCGTCCGCGCTGCAGCAG < 41bp 0.523112058149934 0.757392036821225 0.70743126 0.40585634 prediction 0.468559957342582 Functional Gain - PKNOX1 ENSG00000160199 CDS Human protein_coding chr21:44437069 chr21:44437070 nonsynonymous SNV 0.113 5 22 hm5C_associated_SNPs_113373 0 0 1 0 2 PKNOX1 chr21:44437018 3'AG 44437018 Downstream 53bp
chr21 44437070 44437070 1 + C T GBM 44437069 + 44437049 44437089 41 GCCCTCAGGGAATTGTGGTGCCGGCGTCCGCGCTGCAGCAG GCCCTCAGGGAATTGTGGTGCTGGCGTCCGCGCTGCAGCAG < 41bp 0.523112058149934 0.757392036821225 0.70743126 0.40585634 prediction 0.468559957342582 Functional Gain - PKNOX1 ENSG00000160199 CDS Human protein_coding chr21:44437069 chr21:44437070 nonsynonymous SNV 0.113 5 22 hm5C_associated_SNPs_113373 0 0 1 0 2 PKNOX1 chr21:44437117 5'GT 44437117 Upstream 48bp
chr19 9949309 9949309 1 + C A CESC 9949308 + 9949288 9949328 41 ACCCGGACCAAGGAGGAGGCCCTGGAGCTGATCAACGGTGA ACCCGGACCAAGGAGGAGGCCATGGAGCTGATCAACGGTGA < 41bp 0.477640646336055 0.734269302828516 0.20172462 0.3366847 prediction 0.468538605657031 Functional Gain - PIN1 ENSG00000127445 CDS Human protein_coding chr19:9949308 chr19:9949309 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_113377 0 0 1 0 1 PIN1 chr19:9949324 5'GT 9949324 Upstream 16bp
chr11 111753245 111753245 1 + C T rs201320359 111753244 + 111753224 111753264 41 AATGAGAATACCTATTCAAACCGTACCCTGATGGGCAACTG AATGAGAATACCTATTCAAACTGTACCCTGATGGGCAACTG < 41bp 0.486914153964435 0.734267080897113 0.08271775 0.07514387 prediction 0.468534161794226 Functional Gain - C11orf1 ENSG00000137720 CDS Human protein_coding chr11:111753244 chr11:111753245 nonsynonymous SNV 0.799 2 22 hm5C_associated_SNPs_113379 0 0 1 0 1 C11orf1 chr11:111753322 5'GT 111753322 Upstream 78bp
chr9 135929828 135929828 1 + A G KICH 135929825 + 135929805 135929845 41 CAGTGACTTGCCGGTCAAAGCAAAGCGCAGCACCTACAACT CAGTGACTTGCCGGTCAAAGCAAGGCGCAGCACCTACAACT < 41bp 0.554751891398707 0.789015379768924 0.2707459 0.9033859 prediction 0.468526976740433 Functional Gain - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135929825 chr9:135929828 nonsynonymous SNV 0.974 3 24 hm5C_associated_SNPs_113380 0 0 1 0 2 GTF3C5 chr9:135929795 3'AG 135929795 Downstream 34bp
chr9 135929828 135929828 1 + A G KICH 135929825 + 135929805 135929845 41 CAGTGACTTGCCGGTCAAAGCAAAGCGCAGCACCTACAACT CAGTGACTTGCCGGTCAAAGCAAGGCGCAGCACCTACAACT < 41bp 0.554751891398707 0.789015379768924 0.2707459 0.9033859 prediction 0.468526976740433 Functional Gain - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135929825 chr9:135929828 nonsynonymous SNV 0.974 3 24 hm5C_associated_SNPs_113380 0 0 1 0 2 GTF3C5 chr9:135929875 5'GT 135929875 Upstream 48bp
chr11 837528 837528 1 + C T GBM 837527 + 837507 837547 41 GTGGATCCGCTCACAGGAGGCCGGTGGCCGTGTGGTCCCAG GTGGATCCGCTCACAGGAGGCTGGTGGCCGTGTGGTCCCAG < 41bp 0.495377620680451 0.734256119271746 0.3731556 0.3384086 prediction 0.468512238543493 Functional Gain - CD151 ENSG00000177697 CDS Human protein_coding chr11:837527 chr11:837528 synonymous SNV . 0 22 hm5C_associated_SNPs_113382 0 0 1 0 2 CD151 chr11:837460 3'AG 837460 Downstream 69bp
chr11 837528 837528 1 + C T GBM 837527 + 837507 837547 41 GTGGATCCGCTCACAGGAGGCCGGTGGCCGTGTGGTCCCAG GTGGATCCGCTCACAGGAGGCTGGTGGCCGTGTGGTCCCAG < 41bp 0.495377620680451 0.734256119271746 0.3731556 0.3384086 prediction 0.468512238543493 Functional Gain - CD151 ENSG00000177697 CDS Human protein_coding chr11:837527 chr11:837528 synonymous SNV . 0 22 hm5C_associated_SNPs_113382 0 0 1 0 2 CD151 chr11:837618 5'GT 837618 Upstream 91bp
chr1 101198073 101198073 1 + C T READ 101198072 + 101198052 101198092 41 TGAGCCAGGGCTTTCCTGCTCCGAAAATCCTGTGGAGCAGG TGAGCCAGGGCTTTCCTGCTCTGAAAATCCTGTGGAGCAGG < 41bp 0.497476003459356 0.734254289580377 0.27543086 0.19819087 prediction 0.468508579160754 Functional Gain - VCAM1 ENSG00000162692 CDS Human protein_coding chr1:101198072 chr1:101198073 nonsynonymous SNV 0.915 1 22 hm5C_associated_SNPs_113384 0 0 0 0 1 VCAM1 chr1:101197974 3'AG 101197974 Downstream 100bp
chr1 32742001 32742001 1 + C T COAD 32742000 + 32741980 32742020 41 AGACCCAGAAGCCCCAGAAGCCGTGGTGGGAGGACGAGTGG AGACCCAGAAGCCCCAGAAGCTGTGGTGGGAGGACGAGTGG < 41bp 0.517495290119862 0.751745484185921 0.72053695 0.50237125 prediction 0.468500388132117 Functional Gain - LCK ENSG00000182866 CDS Human protein_coding chr1:32742000 chr1:32742001 nonsynonymous SNV 0.949 2 22 hm5C_associated_SNPs_113386 0 0 0 0 2 LCK chr1:32741938 3'AG 32741938 Downstream 64bp
chr1 32742001 32742001 1 + C T COAD 32742000 + 32741980 32742020 41 AGACCCAGAAGCCCCAGAAGCCGTGGTGGGAGGACGAGTGG AGACCCAGAAGCCCCAGAAGCTGTGGTGGGAGGACGAGTGG < 41bp 0.517495290119862 0.751745484185921 0.72053695 0.50237125 prediction 0.468500388132117 Functional Gain - LCK ENSG00000182866 CDS Human protein_coding chr1:32742000 chr1:32742001 nonsynonymous SNV 0.949 2 22 hm5C_associated_SNPs_113386 0 0 0 0 2 LCK chr1:32742090 5'GT 32742090 Upstream 90bp
chr7 150741261 150741261 1 + C A OV 150741260 + 150741240 150741280 41 GCCCACCGGCTCAGCACTGTCCGTGGGGCCCACTGCATTGT GCCCACCGGCTCAGCACTGTCAGTGGGGCCCACTGCATTGT < 41bp 0.562935975214946 0.797182699476239 0.4347164 0.7660786 prediction 0.468493448522586 Functional Gain - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150741260 chr7:150741261 nonsynonymous SNV 0.682 1 22 hm5C_associated_SNPs_113387 0 0 0 0 1 ABCB8 chr7:150741308 5'GT 150741308 Upstream 48bp
chr1 201972553 201972553 1 + C T PRAD 201972552 + 201972532 201972572 41 ACCTACCAGCTGGTCTACTTCCTGGATAAGATCCTCCAGAA ACCTACCAGCTGGTCTACTTCTTGGATAAGATCCTCCAGAA < 41bp 0.567600629221842 0.801846068239038 0.29615086 0.182634 prediction 0.468490878034391 Functional Gain - RNPEP ENSG00000176393 CDS Human protein_coding chr1:201972552 chr1:201972553 synonymous SNV . 0 22 hm5C_associated_SNPs_113388 0 0 1 0 1 RNPEP chr1:201972589 5'GT 201972589 Upstream 37bp
chr9 130570932 130570932 1 + C T CESC 130570931 + 130570911 130570951 41 GGAGCACCAGCGGTCCAACGCCGCCTTGGCCTTGCAGCTGG GGAGCACCAGCGGTCCAACGCTGCCTTGGCCTTGCAGCTGG < 41bp 0.525913084655062 0.760158179101382 0.27600324 0.20258176 prediction 0.46849018889264 Functional Gain - FPGS ENSG00000136877 CDS Human protein_coding chr9:130570931 chr9:130570932 synonymous SNV . 0 22 hm5C_associated_SNPs_113389 0 0 1 0 1 FPGS chr9:130570984 5'GT 130570984 Upstream 53bp
chr16 19483505 19483505 1 + T C UCEC 19483502 + 19483482 19483522 41 TACATGGTAGCCTGGGTTGTCTCTACAGGAGTGGCCATAGC TACATGGTAGCCTGGGTTGTCTCCACAGGAGTGGCCATAGC < 41bp 0.498662119186996 0.734239942087317 0.9296121 0.97137153 prediction 0.468479884174633 Functional Gain - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19483502 chr16:19483505 synonymous SNV . 0 24 hm5C_associated_SNPs_113391 0 0 0 0 2 TMC5 chr16:19483410 3'AG 19483410 Downstream 96bp
chr16 19483505 19483505 1 + T C UCEC 19483502 + 19483482 19483522 41 TACATGGTAGCCTGGGTTGTCTCTACAGGAGTGGCCATAGC TACATGGTAGCCTGGGTTGTCTCCACAGGAGTGGCCATAGC < 41bp 0.498662119186996 0.734239942087317 0.9296121 0.97137153 prediction 0.468479884174633 Functional Gain - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19483502 chr16:19483505 synonymous SNV . 0 24 hm5C_associated_SNPs_113391 0 0 0 0 2 TMC5 chr16:19483565 5'GT 19483565 Upstream 61bp
chr12 58019086 58019086 1 + C T GBM 58019085 + 58019065 58019105 41 CTTTGCAGATGCTGCTGGGGCCAGAGAAGTGGTGCAGGTGA CTTTGCAGATGCTGCTGGGGCTAGAGAAGTGGTGCAGGTGA < 41bp 0.547652866187703 0.781889811551179 0.594368 0.27077162 prediction 0.468473890726953 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58019085 chr12:58019086 synonymous SNV . 0 22 hm5C_associated_SNPs_113392 0 0 0 0 2 SLC26A10 chr12:58019019 3'AG 58019019 Downstream 68bp
chr12 58019086 58019086 1 + C T GBM 58019085 + 58019065 58019105 41 CTTTGCAGATGCTGCTGGGGCCAGAGAAGTGGTGCAGGTGA CTTTGCAGATGCTGCTGGGGCTAGAGAAGTGGTGCAGGTGA < 41bp 0.547652866187703 0.781889811551179 0.594368 0.27077162 prediction 0.468473890726953 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58019085 chr12:58019086 synonymous SNV . 0 22 hm5C_associated_SNPs_113392 0 0 0 0 2 SLC26A10 chr12:58019101 5'GT 58019101 Upstream 16bp
chr17 40717957 40717957 1 + A G rs140982382 40717954 + 40717934 40717974 41 CCTGGGCCCTCTTGCAGAAGCGCATTCCCAAGACTCATCAG CCTGGGCCCTCTTGCAGAAGCGCGTTCCCAAGACTCATCAG < 41bp 0.5343643549564 0.768596867821579 0.084466696 0.1537959 prediction 0.468465025730357 Functional Gain - COASY ENSG00000068120 CDS Human protein_coding chr17:40717954 chr17:40717957 nonsynonymous SNV 0.308 2 24 hm5C_associated_SNPs_113393 0 0 1 0 1 COASY chr17:40717924 3'AG 40717924 Downstream 34bp
chr10 70646332 70646332 1 + A G UCEC 70646329 + 70646309 70646349 41 ACACAGTCACTTGGAAGGGACAGAAAATCACAGCATGGCAG ACACAGTCACTTGGAAGGGACAGGAAATCACAGCATGGCAG < 41bp 0.497217978460283 0.734231640228874 0.052365094 0.20224157 prediction 0.468463280457748 Functional Gain - STOX1 ENSG00000165730 CDS Human protein_coding chr10:70646329 chr10:70646332 nonsynonymous SNV 0.987 3 24 hm5C_associated_SNPs_113394 0 0 0 0 1 STOX1 chr10:70646374 5'GT 70646374 Upstream 43bp
chr16 1389222 1389222 1 + C T rs61742684 1389221 + 1389201 1389241 41 CCTGTGGATCCCAGCCTCGGCCTGAGAGCCCTGGCCCCAGA CCTGTGGATCCCAGCCTCGGCTTGAGAGCCCTGGCCCCAGA < 41bp 0.503464409418604 0.737691959639247 0.06589824 0.17748156 prediction 0.468455100441285 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1389221 chr16:1389222 synonymous SNV . 0 22 hm5C_associated_SNPs_113396 0 0 1 0 2 BAIAP3 chr16:1389165 3'AG 1389165 Downstream 58bp
chr16 1389222 1389222 1 + C T rs61742684 1389221 + 1389201 1389241 41 CCTGTGGATCCCAGCCTCGGCCTGAGAGCCCTGGCCCCAGA CCTGTGGATCCCAGCCTCGGCTTGAGAGCCCTGGCCCCAGA < 41bp 0.503464409418604 0.737691959639247 0.06589824 0.17748156 prediction 0.468455100441285 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1389221 chr16:1389222 synonymous SNV . 0 22 hm5C_associated_SNPs_113396 0 0 1 0 2 BAIAP3 chr16:1389245 5'GT 1389245 Upstream 24bp
chr3 158322934 158322934 1 + T A rs141302132 158322930 + 158322910 158322950 41 CATTGAACATGGAAGGAGATCAAATGTTTTGGGGGACAAAC CATTGAACATGGAAGGAGATCAAAAGTTTTGGGGGACAAAC < 41bp 0.441356166202576 0.734227509923779 0.57202053 0.5624229 prediction 0.468455019847558 Functional Gain - MLF1 ENSG00000178053 CDS Human protein_coding chr3:158322930 chr3:158322934 nonsynonymous SNV 0.830 0 25 hm5C_associated_SNPs_113397 0 0 1 0 1 MLF1 chr3:158322886 3'AG 158322886 Downstream 49bp
chr16 1291636 1291636 1 + C A COAD 1291635 + 1291615 1291655 41 CACGGTCACCCTGCCCCCTGCCTCAGAGACCTTCCCCCCGG CACGGTCACCCTGCCCCCTGCATCAGAGACCTTCCCCCCGG < 41bp 0.474995752487913 0.734219182284747 0.04123971 0.08472738 prediction 0.468438364569494 Functional Gain - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291635 chr16:1291636 synonymous SNV . 0 22 hm5C_associated_SNPs_113399 0 0 0 0 1 TPSAB1 chr16:1291700 5'GT 1291700 Upstream 65bp
chr10 13151269 13151269 1 + C T rs187734249 13151268 + 13151248 13151288 41 GCAGATGAAAGAGCTCCTGACCGAGAACCACCAGCTGAAAG GCAGATGAAAGAGCTCCTGACTGAGAACCACCAGCTGAAAG < 41bp 0.507250646492789 0.741469821886619 0.26047188 0.12567931 prediction 0.46843835078766 Functional Gain - OPTN ENSG00000123240 CDS Human protein_coding chr10:13151268 chr10:13151269 synonymous SNV . 0 22 hm5C_associated_SNPs_113400 0 0 1 0 1 OPTN chr10:13151288 5'GT 13151288 Upstream 20bp
chr3 183952099 183952099 1 + A G COAD 183952096 + 183952076 183952116 41 TCTGCGGGCAGATGCCCCCCCTCATGCCAGCTCTGCAGCCA TCTGCGGGCAGATGCCCCCCCTCGTGCCAGCTCTGCAGCCA < 41bp 0.490990465605632 0.73421784674908 0.11697897 0.15258592 prediction 0.468435693498159 Functional Gain - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183952096 chr3:183952099 nonsynonymous SNV 0.991 1 24 hm5C_associated_SNPs_113401 0 0 0 0 2 VWA5B2 chr3:183952054 3'AG 183952054 Downstream 46bp
chr3 183952099 183952099 1 + A G COAD 183952096 + 183952076 183952116 41 TCTGCGGGCAGATGCCCCCCCTCATGCCAGCTCTGCAGCCA TCTGCGGGCAGATGCCCCCCCTCGTGCCAGCTCTGCAGCCA < 41bp 0.490990465605632 0.73421784674908 0.11697897 0.15258592 prediction 0.468435693498159 Functional Gain - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183952096 chr3:183952099 nonsynonymous SNV 0.991 1 24 hm5C_associated_SNPs_113401 0 0 0 0 2 VWA5B2 chr3:183952185 5'GT 183952185 Upstream 87bp
chr1 160146346 160146346 1 + T A LUAD 160146342 + 160146322 160146362 41 GCTTCCAAGGAACCCAAAGACGGATAATCTGGTGAACCACC GCTTCCAAGGAACCCAAAGACGGAAAATCTGGTGAACCACC < 41bp 0.409090488122621 0.734202723710126 0.284468 0.39184585 prediction 0.468405447420251 Functional Gain - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160146342 chr1:160146346 nonsynonymous SNV 0.194 2 25 hm5C_associated_SNPs_113405 0 0 0 0 3 ATP1A4 chr1:160146269 3'AG 160146269 Downstream 78bp
chr1 160146346 160146346 1 + T A LUAD 160146342 + 160146322 160146362 41 GCTTCCAAGGAACCCAAAGACGGATAATCTGGTGAACCACC GCTTCCAAGGAACCCAAAGACGGAAAATCTGGTGAACCACC < 41bp 0.409090488122621 0.734202723710126 0.284468 0.39184585 prediction 0.468405447420251 Functional Gain - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160146342 chr1:160146346 nonsynonymous SNV 0.194 2 25 hm5C_associated_SNPs_113405 0 0 0 0 3 ATP1A4 chr1:160146352 5'GT 160146352 Upstream 7bp
chr1 160146346 160146346 1 + T A LUAD 160146342 + 160146322 160146362 41 GCTTCCAAGGAACCCAAAGACGGATAATCTGGTGAACCACC GCTTCCAAGGAACCCAAAGACGGAAAATCTGGTGAACCACC < 41bp 0.409090488122621 0.734202723710126 0.284468 0.39184585 prediction 0.468405447420251 Functional Gain - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160146342 chr1:160146346 nonsynonymous SNV 0.194 2 25 hm5C_associated_SNPs_113405 0 0 0 0 3 ATP1A4 chr1:160146392 5'GT 160146392 Upstream 47bp
chr3 47449402 47449402 1 + C T SKCM 47449401 + 47449381 47449421 41 GAGGAGAAGGCCAAGCTGCTCCGGGAGATGATGGCCAAGAT GAGGAGAAGGCCAAGCTGCTCTGGGAGATGATGGCCAAGAT < 41bp 0.523301549519461 0.757497527734661 0.8789148 0.5597227 prediction 0.468391956430399 Functional Gain - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47449401 chr3:47449402 nonsynonymous SNV 0.987 4 22 hm5C_associated_SNPs_113406 0 0 1 0 2 PTPN23 chr3:47449380 3'AG 47449380 Downstream 23bp
chr3 47449402 47449402 1 + C T SKCM 47449401 + 47449381 47449421 41 GAGGAGAAGGCCAAGCTGCTCCGGGAGATGATGGCCAAGAT GAGGAGAAGGCCAAGCTGCTCTGGGAGATGATGGCCAAGAT < 41bp 0.523301549519461 0.757497527734661 0.8789148 0.5597227 prediction 0.468391956430399 Functional Gain - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47449401 chr3:47449402 nonsynonymous SNV 0.987 4 22 hm5C_associated_SNPs_113406 0 0 1 0 2 PTPN23 chr3:47449445 5'GT 47449445 Upstream 44bp
chr9 138235953 138235953 1 + A G COAD 138235950 + 138235930 138235970 41 CGCCAGGCCTTCCTGGGTTCCAGACAGGCCCGCCACGGGCA CGCCAGGCCTTCCTGGGTTCCAGGCAGGCCCGCCACGGGCA < 41bp 0.482279304104977 0.734195244882515 0.15325415 0.3520829 prediction 0.468390489765031 Functional Gain - C9orf62 ENSG00000178243 CDS Human lincRNA chr9:138235950 chr9:138235953 synonymous SNV . 0 24 hm5C_associated_SNPs_113407 0 0 0 0 1 C9orf62 chr9:138235868 3'AG 138235868 Downstream 86bp
chr3 40457359 40457359 1 + C T UCEC 40457358 + 40457338 40457378 41 TGTGGCACATGTGGGTGCACCCGCATGGAGTGGAAACCACG TGTGGCACATGTGGGTGCACCTGCATGGAGTGGAAACCACG < 41bp 0.474332440518115 0.734189902674388 0.34982973 0.53553706 prediction 0.468379805348775 Functional Gain - ENTPD3 ENSG00000168032 CDS Human protein_coding chr3:40457358 chr3:40457359 nonsynonymous SNV 0.392 4 22 hm5C_associated_SNPs_113409 0 0 0 0 1 ENTPD3 chr3:40457331 3'AG 40457331 Downstream 29bp
chr3 195447901 195447901 1 + C G HNSC 195447897 + 195447877 195447917 41 GGATGGGCTGTCTCTGGGGTCTGGCTCTGCCCCTTTTCTTC GGATGGGCTGTCTCTGGGGTCTGGGTCTGCCCCTTTTCTTC < 41bp 0.622384898581187 0.856573168926385 0.05628693 0.34079415 prediction 0.468376540690396 Functional Gain - MUC20 ENSG00000176945 CDS Human protein_coding chr3:195447897 chr3:195447901 nonsynonymous SNV 0.402 2 25 hm5C_associated_SNPs_113411 0 0 1 0 1 MUC20 chr3:195447954 5'GT 195447954 Upstream 54bp
chr5 176795190 176795190 1 + C T DLBC 176795189 + 176795169 176795209 41 ACTGCAAACGCCGCCTTGCGCCGAGAGTCTCAGGGCTCCCT ACTGCAAACGCCGCCTTGCGCTGAGAGTCTCAGGGCTCCCT < 41bp 0.524896434830856 0.759083095508266 0.5122952 0.20066866 prediction 0.468373321354819 Functional Gain - RGS14 ENSG00000169220 CDS Human protein_coding chr5:176795189 chr5:176795190 stopgain 0.912 1 22 hm5C_associated_SNPs_113412 0 0 1 0 2 RGS14 chr5:176795158 3'AG 176795158 Downstream 33bp
chr5 176795190 176795190 1 + C T DLBC 176795189 + 176795169 176795209 41 ACTGCAAACGCCGCCTTGCGCCGAGAGTCTCAGGGCTCCCT ACTGCAAACGCCGCCTTGCGCTGAGAGTCTCAGGGCTCCCT < 41bp 0.524896434830856 0.759083095508266 0.5122952 0.20066866 prediction 0.468373321354819 Functional Gain - RGS14 ENSG00000169220 CDS Human protein_coding chr5:176795189 chr5:176795190 stopgain 0.912 1 22 hm5C_associated_SNPs_113412 0 0 1 0 2 RGS14 chr5:176795267 5'GT 176795267 Upstream 78bp
chr1 50610782 50610782 1 + C A LUAD 50610781 + 50610761 50610801 41 CTCATCGTCAACTATTTACCCCAGAATATGACCCAAGAAGA CTCATCGTCAACTATTTACCCAAGAATATGACCCAAGAAGA < 41bp 0.545916407141702 0.780096936836164 0.018622011 0.061460555 prediction 0.468361059388926 Functional Gain - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50610781 chr1:50610782 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_113415 0 0 0 0 1 ELAVL4 chr1:50610869 5'GT 50610869 Upstream 88bp
chr20 44044884 44044884 1 + C A UCEC 44044880 + 44044860 44044900 41 CTTGCAGAACCCCCACGCGACAGCCTGCGGGAGGAACTTGT CTTGCAGAACCCCCACGCGACAGCATGCGGGAGGAACTTGT < 41bp 0.389216426414427 0.734178614048356 0.014752001 0.01443705 prediction 0.468357228096712 Functional Gain - PIGT ENSG00000124155 CDS Human protein_coding chr20:44044880 chr20:44044884 nonsynonymous SNV 0.915 3 25 hm5C_associated_SNPs_113417 0 0 1 0 1 PIGT chr20:44044983 5'GT 44044983 Upstream 100bp
chr20 33586647 33586647 1 + C T rs17092206 33586646 + 33586626 33586666 41 GCTGCTGTCCAAGGCCAATGCCGAGGTGGCCCAGTGGAGGA GCTGCTGTCCAAGGCCAATGCTGAGGTGGCCCAGTGGAGGA < 41bp 0.495513620657672 0.734177202385109 0.5861489 0.53121537 prediction 0.468354404770217 Functional Gain - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33586646 chr20:33586647 synonymous SNV . 0 22 hm5C_associated_SNPs_113418 0 0 0 0 1 MYH7B chr20:33586718 5'GT 33586718 Upstream 72bp
chr7 100187902 100187902 1 + A G STAD 100187899 + 100187879 100187919 41 ATGGGGAAGGCGTGTGGAGACGCATCTGTCGCAGACTCAGT ATGGGGAAGGCGTGTGGAGACGCGTCTGTCGCAGACTCAGT < 41bp 0.513100117646364 0.747267818305045 0.08292884 0.21073824 prediction 0.468335401317363 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100187899 chr7:100187902 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_113421 0 0 0 0 1 FBXO24 chr7:100187980 5'GT 100187980 Upstream 79bp
chr8 23114093 23114093 1 + C A LIHC 23114092 + 23114072 23114112 41 CGCAAAGTGGAGTCCTTATCCCAGGAAGCAGAGAGGTAACT CGCAAAGTGGAGTCCTTATCCAAGGAAGCAGAGAGGTAACT < 41bp 0.46596700446647 0.734166324395959 0.3777249 0.8877232 prediction 0.468332648791919 Functional Gain - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23114092 chr8:23114093 nonsynonymous SNV 0.970 0 22 hm5C_associated_SNPs_113423 0 0 1 0 1 CHMP7 chr8:23114106 5'GT 23114106 Upstream 14bp
chr15 90274678 90274678 1 + C A COAD 90274677 + 90274657 90274697 41 ATTGTCCTTCCCCCTAGACCCCGAGGGTGTGTGGCCCTGTG ATTGTCCTTCCCCCTAGACCCAGAGGGTGTGTGGCCCTGTG < 41bp 0.469255557870866 0.734163913941645 0.3169359 0.90053284 prediction 0.468327827883289 Functional Gain - WDR93 ENSG00000140527 CDS Human protein_coding chr15:90274677 chr15:90274678 synonymous SNV . 0 22 hm5C_associated_SNPs_113424 0 0 0 0 1 WDR93 chr15:90274674 3'AG 90274674 Downstream 5bp
chr1 158914718 158914718 1 + C A GBM 158914717 + 158914697 158914737 41 CTCCAGGAGCATGGCACTACCCCAGGAACAGAGTCAGCATC CTCCAGGAGCATGGCACTACCACAGGAACAGAGTCAGCATC < 41bp 0.564912143824797 0.799072216124099 0.29367322 0.34906352 prediction 0.468320144598603 Functional Gain - PYHIN1 ENSG00000163564 CDS Human protein_coding chr1:158914717 chr1:158914718 synonymous SNV . 0 22 hm5C_associated_SNPs_113425 0 0 0 0 1 PYHIN1 chr1:158914665 3'AG 158914665 Downstream 54bp
chr6 17463242 17463242 1 + A G UCEC 17463239 + 17463219 17463259 41 GTTCCCAGGCAGAAATGGTGCACAGTGCTTTCCAGGCCCAG GTTCCCAGGCAGAAATGGTGCACGGTGCTTTCCAGGCCCAG < 41bp 0.508518212587147 0.742663981799375 0.24972779 0.593587 prediction 0.468291538424455 Functional Gain - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17463239 chr6:17463242 nonsynonymous SNV 0.923 0 24 hm5C_associated_SNPs_113426 0 0 1 0 2 CAP2 chr6:17463227 3'AG 17463227 Downstream 16bp
chr6 17463242 17463242 1 + A G UCEC 17463239 + 17463219 17463259 41 GTTCCCAGGCAGAAATGGTGCACAGTGCTTTCCAGGCCCAG GTTCCCAGGCAGAAATGGTGCACGGTGCTTTCCAGGCCCAG < 41bp 0.508518212587147 0.742663981799375 0.24972779 0.593587 prediction 0.468291538424455 Functional Gain - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17463239 chr6:17463242 nonsynonymous SNV 0.923 0 24 hm5C_associated_SNPs_113426 0 0 1 0 2 CAP2 chr6:17463304 5'GT 17463304 Upstream 63bp
chr16 5046919 5046919 1 + C T STAD 5046918 + 5046898 5046938 41 GACTTCCACCTGGACAAGGCCCGGGAAATGCTGCGCCAGTC GACTTCCACCTGGACAAGGCCTGGGAAATGCTGCGCCAGTC < 41bp 0.544778853476421 0.778919925144923 0.7610991 0.34033847 prediction 0.468282143337005 Functional Gain - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5046918 chr16:5046919 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_113427 0 0 0 0 1 SEC14L5 chr16:5046856 3'AG 5046856 Downstream 64bp
chr4 647889 647889 1 - T C rs142597807 647892 - 647872 647912 41 GGCTGGGACTCTCCCATCAGCACAGACCACACGTCAAAAAA GGCTGGGACTCTCCCATCAGCACGGACCACACGTCAAAAAA < 41bp 0.520310638097371 0.754451628148246 0.3820145 0.39255837 prediction 0.46828198010175 Functional Gain - PDE6B ENSG00000133256 CDS Human antisense chr4:647892 chr4:647889 synonymous SNV . 0 24 hm5C_associated_SNPs_113428 3 0 0 0 1 PDE6B chr4:647854 5'GT 647854 Upstream 36bp
chr12 7028903 7028903 1 + C T SKCM 7028902 + 7028882 7028922 41 GACCAGCTGGGGGCACTCTACCAGGACTTTGTCAGGGACTA GACCAGCTGGGGGCACTCTACTAGGACTTTGTCAGGGACTA < 41bp 0.553716154119173 0.787849185016282 0.842282 0.6893152 prediction 0.468266061794219 Functional Gain - ENO2 ENSG00000111674 CDS Human protein_coding chr12:7028902 chr12:7028903 stopgain 0.997 1 22 hm5C_associated_SNPs_113429 0 0 1 0 1 ENO2 chr12:7028927 5'GT 7028927 Upstream 25bp
chr1 151239683 151239683 1 + A G COAD 151239680 + 151239660 151239700 41 TTACGACGTGATGCAGGACCCCGAGTTCCTTCAGAGTGTCC TTACGACGTGATGCAGGACCCCGGGTTCCTTCAGAGTGTCC < 41bp 0.507684160310697 0.741816063736605 0.17240477 0.67598826 prediction 0.468263806851816 Functional Gain - PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151239680 chr1:151239683 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_113430 0 0 1 0 1 PSMD4 chr1:151239649 3'AG 151239649 Downstream 35bp
chr6 398916 398916 1 + C T STAD 398915 + 398895 398935 41 AGAGCCAAGCATAAGGTCTGCCGAAGCCTTGGCGTTCTCAG AGAGCCAAGCATAAGGTCTGCTGAAGCCTTGGCGTTCTCAG < 41bp 0.512946312753187 0.747072312619846 0.30081725 0.16606084 prediction 0.468251999733317 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:398915 chr6:398916 synonymous SNV . 0 22 hm5C_associated_SNPs_113433 0 0 0 0 2 IRF4 chr6:398828 3'AG 398828 Downstream 89bp
chr6 398916 398916 1 + C T STAD 398915 + 398895 398935 41 AGAGCCAAGCATAAGGTCTGCCGAAGCCTTGGCGTTCTCAG AGAGCCAAGCATAAGGTCTGCTGAAGCCTTGGCGTTCTCAG < 41bp 0.512946312753187 0.747072312619846 0.30081725 0.16606084 prediction 0.468251999733317 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:398915 chr6:398916 synonymous SNV . 0 22 hm5C_associated_SNPs_113433 0 0 0 0 2 IRF4 chr6:398935 5'GT 398935 Upstream 20bp
chr2 42119704 42119704 1 + T G rs571363949 42119702 + 42119682 42119722 41 GTCACCACAAACCCGGGAGACATGAGGCCAGGCCTGAGAGG GTCACCACAAACCCGGGAGACAGGAGGCCAGGCCTGAGAGG < 41bp 0.651818007899017 0.885942142340162 0.51784307 0.8901118 prediction 0.46824826888229 Functional Gain - LINC01913 ENSG00000214691 ncRNA_exonic Human lincRNA chr2:42119702 chr2:42119704 . . 0 23 hm5C_associated_SNPs_113434 0 0 0 0 1 LINC01913 chr2:42119669 3'AG 42119669 Downstream 36bp
chr15 74536339 74536339 1 + C T SKCM 74536338 + 74536318 74536358 41 CCCCACAGAACACTGAAGACCCAGAGGAGCCCCTGATCGCC CCCCACAGAACACTGAAGACCTAGAGGAGCCCCTGATCGCC < 41bp 0.491970023755601 0.734115501212703 0.7218447 0.27354544 prediction 0.468231002425407 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74536338 chr15:74536339 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_113435 0 0 0 0 1 CCDC33 chr15:74536326 3'AG 74536326 Downstream 14bp
chr11 61205246 61205246 1 + C T ESCA 61205245 + 61205225 61205265 41 GCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCC GCAGGAGAGAACTGATGAATCTATAGAAACCAAAAGAGCCC < 41bp 0.550430128122254 0.78453776120119 0.1943261 0.32541466 prediction 0.468215266157872 Functional Gain - SDHAF2 ENSG00000167985;ENSG00000256591 CDS Human other chr11:61205245 chr11:61205246 synonymous SNV . 0 22 hm5C_associated_SNPs_113440 0 0 1 0 1 SDHAF2 chr11:61205320 5'GT 61205320 Upstream 75bp
chr5 137219202 137219202 1 + T C LUSC 137219200 + 137219180 137219220 41 CATCTTTGAAGTAGTCAGAGCTTCAGATGCAGGGGCTTATG CATCTTTGAAGTAGTCAGAGCTCCAGATGCAGGGGCTTATG < 41bp 0.434853470015659 0.734106616844847 0.26357934 0.3965479 prediction 0.468213233689694 Functional Gain - MYOT ENSG00000120729 CDS Human protein_coding chr5:137219200 chr5:137219202 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_113441 0 0 0 0 1 MYOT chr5:137219280 5'GT 137219280 Upstream 79bp
chr2 114356220 114356220 1 + C A COAD 114356219 + 114356199 114356239 41 GACCTGGGGCTGGTGAGGGGCCCGGAGGAGCCTTTGCCCGT GACCTGGGGCTGGTGAGGGGCACGGAGGAGCCTTTGCCCGT < 41bp 0.539485489099337 0.773591523406878 0.41753575 0.66730225 prediction 0.468212068615083 Functional Gain - WASH2P ENSG00000146556 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:114356219 chr2:114356220 . . 0 22 hm5C_associated_SNPs_113442 0 0 1 0 1 WASH2P chr2:114356184 3'AG 114356184 Downstream 37bp
chr20 37383692 37383692 1 + A G SKCM 37383689 + 37383669 37383709 41 GCAAGCTCCTGGGCAGCACTCTGACCTCTGAGGAGAAACAA GCAAGCTCCTGGGCAGCACTCTGGCCTCTGAGGAGAAACAA < 41bp 0.526487228377021 0.760583063856094 0.19411013 0.54197997 prediction 0.468191670958146 Functional Gain - ACTR5 ENSG00000101442 CDS Human protein_coding chr20:37383689 chr20:37383692 nonsynonymous SNV 0.943 2 24 hm5C_associated_SNPs_113444 0 0 0 0 1 ACTR5 chr20:37383600 3'AG 37383600 Downstream 93bp
chr12 132400462 132400462 1 + C T STAD 132400461 + 132400441 132400481 41 TCTGCACCCGAGCACTCTCCCCGCACTTCCGGGCTGGGCTG TCTGCACCCGAGCACTCTCCCTGCACTTCCGGGCTGGGCTG < 41bp 0.5487997417099 0.782887336436425 0.47631067 0.5795238 prediction 0.468175189453048 Functional Gain - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132400461 chr12:132400462 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_113447 0 0 1 0 1 ULK1 chr12:132400436 3'AG 132400436 Downstream 27bp
chr3 49006033 49006033 1 + C T LUSC 49006032 + 49006012 49006052 41 ACTTTGTGTTTCCATTGCTTCCCAATGAAGAATTGAGAGAG ACTTTGTGTTTCCATTGCTTCTCAATGAAGAATTGAGAGAG < 41bp 0.461591474306392 0.734082537434727 0.17382422 0.1841422 prediction 0.468165074869454 Functional Gain - ARIH2 ENSG00000177479 CDS Human protein_coding chr3:49006032 chr3:49006033 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_113450 0 0 1 0 2 ARIH2 chr3:49005967 3'AG 49005967 Downstream 67bp
chr3 49006033 49006033 1 + C T LUSC 49006032 + 49006012 49006052 41 ACTTTGTGTTTCCATTGCTTCCCAATGAAGAATTGAGAGAG ACTTTGTGTTTCCATTGCTTCTCAATGAAGAATTGAGAGAG < 41bp 0.461591474306392 0.734082537434727 0.17382422 0.1841422 prediction 0.468165074869454 Functional Gain - ARIH2 ENSG00000177479 CDS Human protein_coding chr3:49006032 chr3:49006033 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_113450 0 0 1 0 2 ARIH2 chr3:49006088 5'GT 49006088 Upstream 56bp
chr17 27380079 27380079 1 + C A SARC 27380078 + 27380058 27380098 41 TTTCCCAAATATTCGGTTGCCCAGGGGAGAAGTGGGGCTCT TTTCCCAAATATTCGGTTGCCAAGGGGAGAAGTGGGGCTCT < 41bp 0.580360781966528 0.814440917086142 0.90312946 0.911749 prediction 0.468160270239227 Functional Gain - PIPOX ENSG00000179761 CDS Human protein_coding chr17:27380078 chr17:27380079 synonymous SNV . 0 22 hm5C_associated_SNPs_113452 0 0 1 0 1 PIPOX chr17:27380151 5'GT 27380151 Upstream 73bp
chr19 36604360 36604360 1 + C A rs61736267 36604359 + 36604339 36604379 41 GCGCCCATCTGTGCAGGGATCCGGCCCTTCCGCTGCAGTGC GCGCCCATCTGTGCAGGGATCAGGCCCTTCCGCTGCAGTGC < 41bp 0.566197418770691 0.800273058940476 0.9033983 0.9239985 prediction 0.468151280339571 Functional Gain - OVOL3 ENSG00000105261 CDS Human protein_coding chr19:36604359 chr19:36604360 synonymous SNV . 0 22 hm5C_associated_SNPs_113454 0 0 0 0 1 OVOL3 chr19:36604355 3'AG 36604355 Downstream 6bp
chr16 67201793 67201793 1 + A G UCEC 67201790 + 67201770 67201810 41 AGGGAAAGGGAGCTTCAGCCCCGAGGGGCCCAGGAATGCCC AGGGAAAGGGAGCTTCAGCCCCGGGGGGCCCAGGAATGCCC < 41bp 0.519217282181906 0.753292491249933 0.28800324 0.8814818 prediction 0.468150418136054 Functional Gain - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67201790 chr16:67201793 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_113455 0 0 1 0 2 HSF4 chr16:67201727 3'AG 67201727 Downstream 67bp
chr16 67201793 67201793 1 + A G UCEC 67201790 + 67201770 67201810 41 AGGGAAAGGGAGCTTCAGCCCCGAGGGGCCCAGGAATGCCC AGGGAAAGGGAGCTTCAGCCCCGGGGGGCCCAGGAATGCCC < 41bp 0.519217282181906 0.753292491249933 0.28800324 0.8814818 prediction 0.468150418136054 Functional Gain - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67201790 chr16:67201793 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_113455 0 0 1 0 2 HSF4 chr16:67201850 5'GT 67201850 Upstream 58bp
chr21 45746602 45746602 1 + C T COAD 45746601 + 45746581 45746621 41 ATCCCCGTCCTGCACAGGCACCGCATGCCACGGGAGCAGTG ATCCCCGTCCTGCACAGGCACTGCATGCCACGGGAGCAGTG < 41bp 0.547900746485022 0.781973113732327 0.03317955 0.085672826 prediction 0.46814473449461 Functional Gain - PFKL ENSG00000141959 CDS Human protein_coding chr21:45746601 chr21:45746602 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_113456 0 0 1 0 1 PFKL chr21:45746598 3'AG 45746598 Downstream 5bp
chr5 52779399 52779399 1 + C T SKCM 52779398 + 52779378 52779418 41 ATGAACAAGAAGAACAAACCCCGCTGCGTCTGCGCCCCGGA ATGAACAAGAAGAACAAACCCTGCTGCGTCTGCGCCCCGGA < 41bp 0.526074337601264 0.760143380619715 0.15455887 0.19506156 prediction 0.468138086036901 Functional Gain - FST ENSG00000134363 CDS Human protein_coding chr5:52779398 chr5:52779399 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_113457 0 0 1 0 1 FST chr5:52779334 3'AG 52779334 Downstream 66bp
chr4 71471985 71471985 1 + C A rs113506649 71471981 + 71471961 71472001 41 GCCCGGCTTTGAGGGAATGCCCCACAACCCAGCTATGGGCG GCCCGGCTTTGAGGGAATGCCCCAAAACCCAGCTATGGGCG < 41bp 0.314933966534645 0.734062035507591 0.022526026 0.06575039 prediction 0.468124071015181 Functional Gain - AMBN ENSG00000178522 CDS Human protein_coding chr4:71471981 chr4:71471985 nonsynonymous SNV 0.031 0 25 hm5C_associated_SNPs_113459 0 0 0 0 1 AMBN chr4:71471902 3'AG 71471902 Downstream 84bp
chr6 44116545 44116545 1 + C T UCEC 44116544 + 44116524 44116564 41 GCCAGGGAGCACCTCTCCATCCGAGGCTTCATCTGGTGGCT GCCAGGGAGCACCTCTCCATCTGAGGCTTCATCTGGTGGCT < 41bp 0.530610698304418 0.764672063397952 0.96330583 0.92978704 prediction 0.468122730187067 Functional Gain - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116544 chr6:44116545 stopgain 1.000 1 22 hm5C_associated_SNPs_113460 0 0 1 3 1 TMEM63B chr6:44116529 3'AG 44116529 Downstream 17bp
chr12 234890 234890 1 + C A LUAD 234889 + 234869 234909 41 GGCAGACCCAGTGCCCATGCCCCGAAGGCTCAAGCCCAGGA GGCAGACCCAGTGCCCATGCCACGAAGGCTCAAGCCCAGGA < 41bp 0.546683117469772 0.780743756707424 0.21663284 0.38081715 prediction 0.468121278475304 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:234889 chr12:234890 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_113461 0 0 0 0 1 IQSEC3 chr12:234799 3'AG 234799 Downstream 92bp
chr17 8215926 8215926 1 + C A LUSC 8215922 + 8215902 8215942 41 ATGGGGAGAGAGAAGCTCCCCTCACCGGGAGTGGGTCCCAG ATGGGGAGAGAGAAGCTCCCCTCAACGGGAGTGGGTCCCAG < 41bp 0.30593737624862 0.734058531930034 0.026747197 0.056257248 prediction 0.468117063860067 Functional Gain - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8215922 chr17:8215926 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_113462 0 0 0 0 1 ARHGEF15 chr17:8215958 5'GT 8215958 Upstream 33bp
chr1 175086153 175086153 1 + C A rs116663940 175086149 + 175086129 175086169 41 CTGTCTCCTGGGACCCGGTGCGGGCCACCATTGACAGGTAT CTGTCTCCTGGGACCCGGTGCGGGACACCATTGACAGGTAT < 41bp 0.329898050571708 0.734050831963901 0.5066267 0.75291014 prediction 0.468101663927803 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175086149 chr1:175086153 nonsynonymous SNV 0.006 4 25 hm5C_associated_SNPs_113465 0 0 0 0 1 TNN chr1:175086075 3'AG 175086075 Downstream 79bp
chr21 35514738 35514738 1 + C A THCA 35514737 + 35514717 35514757 41 GGTGGATTTTTATGCACCCACCGCAGCTGTTGAAAGCATGG GGTGGATTTTTATGCACCCACAGCAGCTGTTGAAAGCATGG < 41bp 0.538438798258831 0.772482425095299 0.03920287 0.28282145 prediction 0.468087253672934 Functional Gain - MRPS6 ENSG00000243927 CDS Human protein_coding chr21:35514737 chr21:35514738 synonymous SNV . 0 22 hm5C_associated_SNPs_113467 0 0 1 0 1 MRPS6 chr21:35514708 3'AG 35514708 Downstream 31bp
chr19 30934525 30934525 1 + C T SKCM 30934524 + 30934504 30934544 41 CGGCGGAGCCGGAAGCTGAGCCCCACCTGAGTGGCCCCGTC CGGCGGAGCCGGAAGCTGAGCTCCACCTGAGTGGCCCCGTC < 41bp 0.545798108230031 0.779841253785568 0.32636133 0.74555063 prediction 0.468086291111072 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30934524 chr19:30934525 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_113468 0 0 0 0 1 ZNF536 chr19:30934468 3'AG 30934468 Downstream 58bp
chr18 28711575 28711575 1 - G T ESCA 28711576 - 28711556 28711596 41 CACGGACTGGCAGAGTTTCACCCAACCTCGGCTTGGCGAAG CACGGACTGGCAGAGTTTCACACAACCTCGGCTTGGCGAAG < 41bp 0.468868641120173 0.734043075695971 0.087129354 0.12792683 prediction 0.468086151391942 Functional Gain - DSC1 ENSG00000134765 CDS Human protein_coding chr18:28711576 chr18:28711575 synonymous SNV . 0 22 hm5C_associated_SNPs_113469 0 0 0 0 1 DSC1 chr18:28711557 5'GT 28711557 Upstream 19bp
chr3 129020948 129020948 1 + C A UCEC 129020947 + 129020927 129020967 41 ACAACTCGCGAAACAACACTCCTGAGTGTCTGGCTCCTGTC ACAACTCGCGAAACAACACTCATGAGTGTCTGGCTCCTGTC < 41bp 0.584570071560844 0.818611270775296 0.2966833 0.8875968 prediction 0.468082398428905 Functional Gain - HMCES ENSG00000183624 CDS Human protein_coding chr3:129020947 chr3:129020948 nonsynonymous SNV 0.965 4 22 hm5C_associated_SNPs_113470 0 0 0 0 1 HMCES chr3:129020985 5'GT 129020985 Upstream 38bp
chr16 66997138 66997138 1 + C A COAD 66997134 + 66997114 66997154 41 ACCCTGGGTCGTGTGCGAGGCCGGCAGGTGGGCGTGAAGGG ACCCTGGGTCGTGTGCGAGGCCGGAAGGTGGGCGTGAAGGG < 41bp 0.322885955396308 0.734035856949208 0.31425387 0.34794563 prediction 0.468071713898416 Functional Gain - CES3 ENSG00000172828 CDS Human protein_coding chr16:66997134 chr16:66997138 nonsynonymous SNV 0.521 0 25 hm5C_associated_SNPs_113471 0 0 1 0 1 CES3 chr16:66997082 3'AG 66997082 Downstream 57bp
chr12 121437158 121437158 1 + T C KIRP 121437156 + 121437136 121437176 41 CTCATCACCGACACCACCAACCTGAGCGCCCTGGCCAGCCT CTCATCACCGACACCACCAACCCGAGCGCCCTGGCCAGCCT < 41bp 0.462718487696533 0.734030520749221 0.22574848 0.56812644 prediction 0.468061041498443 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121437156 chr12:121437158 nonsynonymous SNV 0.990 5 23 hm5C_associated_SNPs_113472 0 0 0 0 2 HNF1A chr12:121437071 3'AG 121437071 Downstream 88bp
chr12 121437158 121437158 1 + T C KIRP 121437156 + 121437136 121437176 41 CTCATCACCGACACCACCAACCTGAGCGCCCTGGCCAGCCT CTCATCACCGACACCACCAACCCGAGCGCCCTGGCCAGCCT < 41bp 0.462718487696533 0.734030520749221 0.22574848 0.56812644 prediction 0.468061041498443 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121437156 chr12:121437158 nonsynonymous SNV 0.990 5 23 hm5C_associated_SNPs_113472 0 0 0 0 2 HNF1A chr12:121437192 5'GT 121437192 Upstream 35bp
chr1 26603096 26603096 1 + C T LUAD 26603095 + 26603075 26603115 41 AACACCTGCGCCAGGCCCAACCAGGGTCTCCACCTTCACCA AACACCTGCGCCAGGCCCAACTAGGGTCTCCACCTTCACCA < 41bp 0.476971425033999 0.734026677040511 0.895038 0.29793113 prediction 0.468053354081021 Functional Gain - CEP85 ENSG00000130695 CDS Human protein_coding chr1:26603095 chr1:26603096 nonsynonymous SNV 0.953 0 22 hm5C_associated_SNPs_113474 0 0 1 0 1 CEP85 chr1:26603026 3'AG 26603026 Downstream 71bp
chr9 130149584 130149584 1 + C T SKCM 130149583 + 130149563 130149603 41 CACCCCCGGGCCGAGATACTCCAGTATTTCCTTCTTCCCTG CACCCCCGGGCCGAGATACTCTAGTATTTCCTTCTTCCCTG < 41bp 0.489368115705324 0.734021762495628 0.37489438 0.3965598 prediction 0.468043524991256 Functional Gain - GARNL3 ENSG00000136895 CDS Human protein_coding chr9:130149583 chr9:130149584 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_113476 0 0 0 0 1 GARNL3 chr9:130149610 5'GT 130149610 Upstream 27bp
chr16 8839954 8839954 1 + A G rs1731017 8839951 + 8839931 8839971 41 GGAAGTCCCAGGGCCTAGATCTCAGGTGAGTTGAGCACACC GGAAGTCCCAGGGCCTAGATCTCGGGTGAGTTGAGCACACC < 41bp 0.529037720866357 0.76305821390071 0.36920252 0.87954205 prediction 0.468040986068706 Functional Gain - ABAT ENSG00000183044 CDS Human protein_coding chr16:8839951 chr16:8839954 nonsynonymous SNV 0.759 0 24 hm5C_associated_SNPs_113477 1 0 1 0 2 ABAT chr16:8839858 3'AG 8839858 Downstream 97bp
chr16 8839954 8839954 1 + A G rs1731017 8839951 + 8839931 8839971 41 GGAAGTCCCAGGGCCTAGATCTCAGGTGAGTTGAGCACACC GGAAGTCCCAGGGCCTAGATCTCGGGTGAGTTGAGCACACC < 41bp 0.529037720866357 0.76305821390071 0.36920252 0.87954205 prediction 0.468040986068706 Functional Gain - ABAT ENSG00000183044 CDS Human protein_coding chr16:8839951 chr16:8839954 nonsynonymous SNV 0.759 0 24 hm5C_associated_SNPs_113477 1 0 1 0 2 ABAT chr16:8839955 5'GT 8839955 Upstream 2bp
chr12 7289700 7289700 1 + C G SKCM 7289699 + 7289679 7289719 41 ACCATCGTATGTAACACTGTCCAGAATGGTGAGCCTCCCCT ACCATCGTATGTAACACTGTCGAGAATGGTGAGCCTCCCCT < 41bp 0.420611157259799 0.734017017622814 0.13240439 0.56256783 prediction 0.468034035245628 Functional Gain - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7289699 chr12:7289700 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_113478 0 0 1 0 1 CLSTN3 chr12:7289706 5'GT 7289706 Upstream 7bp
chr8 57358407 57358407 1 - G A COAD 57358408 - 57358388 57358428 41 GATTGCGCGACGTGCAGCTACCGCCTAGTGCGCCCGGCCGA GATTGCGCGACGTGCAGCTACTGCCTAGTGCGCCCGGCCGA < 41bp 0.540887615194623 0.774893597902189 0.37567428 0.26614177 prediction 0.468011965415132 Functional Gain - PENK ENSG00000181195 CDS Human protein_coding chr8:57358408 chr8:57358407 nonsynonymous SNV 0.984 3 22 hm5C_associated_SNPs_113481 0 0 0 0 1 PENK chr8:57358375 5'GT 57358375 Upstream 33bp
chr10 12149981 12149981 1 + C A rs35046964 12149977 + 12149957 12149997 41 TGGCTACGATGGGGCTGGGCCAGACCACTCATCCTGTCGAA TGGCTACGATGGGGCTGGGCCAGAACACTCATCCTGTCGAA < 41bp 0.322313967267832 0.734003159160224 0.21842802 0.16405123 prediction 0.468006318320448 Functional Gain - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12149977 chr10:12149981 nonsynonymous SNV 0.026 1 25 hm5C_associated_SNPs_113482 0 0 0 0 2 DHTKD1 chr10:12149908 3'AG 12149908 Downstream 74bp
chr10 12149981 12149981 1 + C A rs35046964 12149977 + 12149957 12149997 41 TGGCTACGATGGGGCTGGGCCAGACCACTCATCCTGTCGAA TGGCTACGATGGGGCTGGGCCAGAACACTCATCCTGTCGAA < 41bp 0.322313967267832 0.734003159160224 0.21842802 0.16405123 prediction 0.468006318320448 Functional Gain - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12149977 chr10:12149981 nonsynonymous SNV 0.026 1 25 hm5C_associated_SNPs_113482 0 0 0 0 2 DHTKD1 chr10:12150014 5'GT 12150014 Upstream 34bp
chr15 85188990 85188990 1 - G A rs373323041 85188991 - 85188971 85189011 41 GCCTTCTGCTGTGCTTCAGGCCGGCTGGGGCTTGTTGACAC GCCTTCTGCTGTGCTTCAGGCTGGCTGGGGCTTGTTGACAC < 41bp 0.514608731668434 0.74861078001332 0.14444515 0.16760325 prediction 0.46800409668977 Functional Gain - WDR73 ENSG00000177082 CDS Human protein_coding chr15:85188991 chr15:85188990 nonsynonymous SNV 0.410 2 22 hm5C_associated_SNPs_113483 0 0 1 1 1 WDR73 chr15:85189067 3'AG 85189067 Downstream 78bp
chrX 48382388 48382388 1 + C A UCEC 48382387 + 48382367 48382407 41 GCAGTGTGTGGGTTCATTCACCTGGTGATCGAGGGCTGGTT GCAGTGTGTGGGTTCATTCACATGGTGATCGAGGGCTGGTT < 41bp 0.465177643843633 0.734001397955945 0.3309723 0.46058118 prediction 0.46800279591189 Functional Gain - EBP ENSG00000147155 CDS Human protein_coding chrX:48382387 chrX:48382388 nonsynonymous SNV 0.984 1 22 hm5C_associated_SNPs_113484 0 0 1 0 1 EBP chrX:48382460 5'GT 48382460 Upstream 73bp
chr11 114272469 114272469 1 + C T BLCA 114272468 + 114272448 114272488 41 CAAAAGATAAGGATGGTAAACCAAAGCAGTTTGCGTTTGTG CAAAAGATAAGGATGGTAAACTAAAGCAGTTTGCGTTTGTG < 41bp 0.495386798037797 0.733999464870854 0.16727147 0.20606044 prediction 0.467998929741708 Functional Gain - RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114272468 chr11:114272469 nonsynonymous SNV 0.999 0 22 hm5C_associated_SNPs_113485 0 0 1 0 1 RBM7 chr11:114272420 3'AG 114272420 Downstream 50bp
chr3 111768813 111768813 1 + C T SKCM 111768812 + 111768792 111768832 41 GGGCATATTTTGAGGTCATTCCAGAACAAAGTAAGTCTTCC GGGCATATTTTGAGGTCATTCTAGAACAAAGTAAGTCTTCC < 41bp 0.518153682556616 0.752152248733297 0.20118323 0.5456597 prediction 0.467997132353362 Functional Gain - TMPRSS7 ENSG00000176040 CDS Human protein_coding chr3:111768812 chr3:111768813 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_113486 0 0 0 0 1 TMPRSS7 chr3:111768821 5'GT 111768821 Upstream 9bp
chr2 97462842 97462842 1 + T C COAD 97462840 + 97462820 97462860 41 GGCCTGGTCACCCTGGAGGACGTGATCGAGGAGATCATCAA GGCCTGGTCACCCTGGAGGACGCGATCGAGGAGATCATCAA < 41bp 0.605013350439432 0.838988048800294 0.17688328 0.32761705 prediction 0.467949396721724 Functional Gain - CNNM4 ENSG00000158158 CDS Human protein_coding chr2:97462840 chr2:97462842 nonsynonymous SNV 0.991 5 23 hm5C_associated_SNPs_113492 0 0 1 0 2 CNNM4 chr2:97462749 3'AG 97462749 Downstream 94bp
chr2 97462842 97462842 1 + T C COAD 97462840 + 97462820 97462860 41 GGCCTGGTCACCCTGGAGGACGTGATCGAGGAGATCATCAA GGCCTGGTCACCCTGGAGGACGCGATCGAGGAGATCATCAA < 41bp 0.605013350439432 0.838988048800294 0.17688328 0.32761705 prediction 0.467949396721724 Functional Gain - CNNM4 ENSG00000158158 CDS Human protein_coding chr2:97462840 chr2:97462842 nonsynonymous SNV 0.991 5 23 hm5C_associated_SNPs_113492 0 0 1 0 2 CNNM4 chr2:97462892 5'GT 97462892 Upstream 51bp
chr19 11097628 11097628 1 + C T SKCM 11097627 + 11097607 11097647 41 CCAGGACCCTCGGGCGTGCCCCCCGGGATGCCAGGCCAGCC CCAGGACCCTCGGGCGTGCCCTCCGGGATGCCAGGCCAGCC < 41bp 0.543712869889659 0.777686688093793 0.39721042 0.6652622 prediction 0.467947636408268 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11097627 chr19:11097628 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_113493 0 0 1 0 2 SMARCA4 chr19:11097581 3'AG 11097581 Downstream 48bp
chr19 11097628 11097628 1 + C T SKCM 11097627 + 11097607 11097647 41 CCAGGACCCTCGGGCGTGCCCCCCGGGATGCCAGGCCAGCC CCAGGACCCTCGGGCGTGCCCTCCGGGATGCCAGGCCAGCC < 41bp 0.543712869889659 0.777686688093793 0.39721042 0.6652622 prediction 0.467947636408268 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11097627 chr19:11097628 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_113493 0 0 1 0 2 SMARCA4 chr19:11097679 5'GT 11097679 Upstream 52bp
chr11 61505635 61505635 1 + C T UCEC 61505634 + 61505614 61505654 41 CTCTCTCAGCTGGAAGGCTTCCGCAGACAGCTCCTGGATGT CTCTCTCAGCTGGAAGGCTTCTGCAGACAGCTCCTGGATGT < 41bp 0.579465851495806 0.813424395458712 0.55527323 0.56156856 prediction 0.467917087925813 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61505634 chr11:61505635 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_113496 0 0 1 0 2 DAGLA chr11:61505607 3'AG 61505607 Downstream 29bp
chr11 61505635 61505635 1 + C T UCEC 61505634 + 61505614 61505654 41 CTCTCTCAGCTGGAAGGCTTCCGCAGACAGCTCCTGGATGT CTCTCTCAGCTGGAAGGCTTCTGCAGACAGCTCCTGGATGT < 41bp 0.579465851495806 0.813424395458712 0.55527323 0.56156856 prediction 0.467917087925813 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61505634 chr11:61505635 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_113496 0 0 1 0 2 DAGLA chr11:61505679 5'GT 61505679 Upstream 45bp
chr12 113355404 113355404 1 + C T LUSC 113355403 + 113355383 113355423 41 GGAAACTTGGGTGGTGGAGACCCAAAGGGTTGGAGGCAGCT GGAAACTTGGGTGGTGGAGACTCAAAGGGTTGGAGGCAGCT < 41bp 0.470467137971473 0.733951870474646 0.19856659 0.81879765 prediction 0.467903740949293 Functional Gain - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113355403 chr12:113355404 nonsynonymous SNV 0.060 0 22 hm5C_associated_SNPs_113497 0 0 0 0 1 OAS1 chr12:113355352 3'AG 113355352 Downstream 53bp
chr2 173429292 173429292 1 + C A THCA 173429291 + 173429271 173429311 41 GATGTCATTCCCACAATGGCCCAGGGTGTGATTGAATACAA GATGTCATTCCCACAATGGCCAAGGGTGTGATTGAATACAA < 41bp 0.554308580772608 0.788259407050915 0.11994371 0.48723546 prediction 0.467901652556614 Functional Gain - PDK1 ENSG00000152256 CDS Human protein_coding chr2:173429291 chr2:173429292 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_113498 0 0 1 0 1 PDK1 chr2:173429231 3'AG 173429231 Downstream 62bp
chr19 17322800 17322800 1 + T C rs117297085 17322798 + 17322778 17322818 41 CGACGAAGGCCGTCGTCCTTCGTAACGGTCAGAGTGAAGAC CGACGAAGGCCGTCGTCCTTCGCAACGGTCAGAGTGAAGAC < 41bp 0.557652612637633 0.791602643579501 0.17141402 0.24302366 prediction 0.467900061883737 Functional Gain - MYO9B ENSG00000099331 CDS Human protein_coding chr19:17322798 chr19:17322800 nonsynonymous SNV 0.924 1 23 hm5C_associated_SNPs_113499 0 0 1 0 1 MYO9B chr19:17322704 3'AG 17322704 Downstream 97bp
chr17 26370294 26370294 1 + C T LUSC 26370293 + 26370273 26370313 41 ATCATCAGCACTCGCATCATCCACAGCAGCAGCTGGATATT ATCATCAGCACTCGCATCATCTACAGCAGCAGCTGGATATT < 41bp 0.482160818455837 0.733933186349918 0.11329204 0.8861108 prediction 0.467866372699837 Functional Gain - NLK ENSG00000087095 CDS Human protein_coding chr17:26370293 chr17:26370294 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_113504 0 0 1 0 1 NLK chr17:26370357 5'GT 26370357 Upstream 64bp
chr4 184626154 184626154 1 + C A BLCA 184626153 + 184626133 184626173 41 ACCTCAGCAATGGAGAATATCCCCATCATCACAACTGTCAT ACCTCAGCAATGGAGAATATCACCATCATCACAACTGTCAT < 41bp 0.548105861846696 0.782036606664963 0.09838733 0.09358543 prediction 0.467861489636535 Functional Gain - TRAPPC11 ENSG00000168538 CDS Human protein_coding chr4:184626153 chr4:184626154 nonsynonymous SNV 0.047 1 22 hm5C_associated_SNPs_113505 0 0 1 0 2 TRAPPC11 chr4:184626132 3'AG 184626132 Downstream 23bp
chr4 184626154 184626154 1 + C A BLCA 184626153 + 184626133 184626173 41 ACCTCAGCAATGGAGAATATCCCCATCATCACAACTGTCAT ACCTCAGCAATGGAGAATATCACCATCATCACAACTGTCAT < 41bp 0.548105861846696 0.782036606664963 0.09838733 0.09358543 prediction 0.467861489636535 Functional Gain - TRAPPC11 ENSG00000168538 CDS Human protein_coding chr4:184626153 chr4:184626154 nonsynonymous SNV 0.047 1 22 hm5C_associated_SNPs_113505 0 0 1 0 2 TRAPPC11 chr4:184626223 5'GT 184626223 Upstream 70bp
chr19 919955 919955 1 + C A rs572007403 919954 + 919934 919974 41 CCTACTGCAGTGAGGCCTTCCCCAGCCGCGCCCTGGAGCGC CCTACTGCAGTGAGGCCTTCCACAGCCGCGCCCTGGAGCGC < 41bp 0.554733009505642 0.788651388788059 0.07770243 0.15678379 prediction 0.467836758564834 Functional Gain - KISS1R ENSG00000116014 CDS Human protein_coding chr19:919954 chr19:919955 nonsynonymous SNV 0.910 4 22 hm5C_associated_SNPs_113510 0 0 0 0 1 KISS1R chr19:919874 3'AG 919874 Downstream 82bp
chr20 2635458 2635458 1 + A G LIHC 2635455 + 2635435 2635475 41 CGATCTGTCAGCTTGTAAAGCACAGCTGGGGCTGGGACACA CGATCTGTCAGCTTGTAAAGCACGGCTGGGGCTGGGACACA < 41bp 0.520559884667859 0.75447333081162 0.13733506 0.2964983 prediction 0.467826892287521 Functional Gain - NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635455 chr20:2635458 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_113511 0 0 1 1 1 NOP56 chr20:2635395 3'AG 2635395 Downstream 64bp
chr11 60538787 60538787 1 + A G UCEC 60538784 + 60538764 60538804 41 TTCATCATCTCCGGATCCCTCTCAGTGGCAGCCGAGAAGAA TTCATCATCTCCGGATCCCTCTCGGTGGCAGCCGAGAAGAA < 41bp 0.535236708982127 0.769145583706798 0.039103508 0.07887274 prediction 0.46781774944934 Functional Gain - MS4A15 ENSG00000166961 CDS Human protein_coding chr11:60538784 chr11:60538787 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_113512 0 0 0 0 2 MS4A15 chr11:60538764 3'AG 60538764 Downstream 24bp
chr11 60538787 60538787 1 + A G UCEC 60538784 + 60538764 60538804 41 TTCATCATCTCCGGATCCCTCTCAGTGGCAGCCGAGAAGAA TTCATCATCTCCGGATCCCTCTCGGTGGCAGCCGAGAAGAA < 41bp 0.535236708982127 0.769145583706798 0.039103508 0.07887274 prediction 0.46781774944934 Functional Gain - MS4A15 ENSG00000166961 CDS Human protein_coding chr11:60538784 chr11:60538787 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_113512 0 0 0 0 2 MS4A15 chr11:60538820 5'GT 60538820 Upstream 34bp
chr3 52522557 52522557 1 + C T SKCM 52522556 + 52522536 52522576 41 ACTGTGGTCATCGCCAAGACCCCCGGGACGGGAGGCAGCCC ACTGTGGTCATCGCCAAGACCTCCGGGACGGGAGGCAGCCC < 41bp 0.539933879496687 0.773841607602866 0.6521668 0.79290515 prediction 0.467815456212358 Functional Gain - NISCH ENSG00000010322 CDS Human protein_coding chr3:52522556 chr3:52522557 nonsynonymous SNV 0.454 0 22 hm5C_associated_SNPs_113513 0 0 1 0 1 NISCH chr3:52522621 5'GT 52522621 Upstream 65bp
chr3 43732440 43732440 1 + T A rs375436268 43732436 + 43732416 43732456 41 GCCCGGGGCGGCCCAGTCGGCCTGTCAGCCGGCTTCGAGAT GCCCGGGGCGGCCCAGTCGGCCTGACAGCCGGCTTCGAGAT < 41bp 0.550898370920927 0.784805323772846 0.095210254 0.08026147 prediction 0.467813905703839 Functional Gain - ABHD5 ENSG00000011198 UTR5 Human protein_coding chr3:43732436 chr3:43732440 . . 0 25 hm5C_associated_SNPs_113515 0 0 1 0 1 ABHD5 chr3:43732531 5'GT 43732531 Upstream 92bp
chr2 182360122 182360122 1 + C A CESC 182360118 + 182360098 182360138 41 ATGTAGCAGTTGGTGCTTTTCGGTCTGATTCTGCTGTCTTG ATGTAGCAGTTGGTGCTTTTCGGTATGATTCTGCTGTCTTG < 41bp 0.330730098879194 0.733903566175738 0.45219654 0.44674778 prediction 0.467807132351476 Functional Gain - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182360118 chr2:182360122 nonsynonymous SNV 0.897 4 25 hm5C_associated_SNPs_113516 0 0 1 0 2 ITGA4 chr2:182360098 3'AG 182360098 Downstream 25bp
chr2 182360122 182360122 1 + C A CESC 182360118 + 182360098 182360138 41 ATGTAGCAGTTGGTGCTTTTCGGTCTGATTCTGCTGTCTTG ATGTAGCAGTTGGTGCTTTTCGGTATGATTCTGCTGTCTTG < 41bp 0.330730098879194 0.733903566175738 0.45219654 0.44674778 prediction 0.467807132351476 Functional Gain - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182360118 chr2:182360122 nonsynonymous SNV 0.897 4 25 hm5C_associated_SNPs_113516 0 0 1 0 2 ITGA4 chr2:182360143 5'GT 182360143 Upstream 22bp
chr2 219494327 219494327 1 + C A STAD 219494323 + 219494303 219494343 41 CCTGTCGTTTACCACGGACACACCCTGACCTCCCGCATCCT CCTGTCGTTTACCACGGACACACCATGACCTCCCGCATCCT < 41bp 0.290315138497705 0.733903509821785 0.019129336 0.08799225 prediction 0.46780701964357 Functional Gain - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219494323 chr2:219494327 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_113517 0 0 0 0 1 PLCD4 chr2:219494242 3'AG 219494242 Downstream 86bp
chr14 22192103 22192103 1 + C A LUAD 22192102 + 22192082 22192122 41 GGTGGGCTGGAAAGGACCCCCCCAATCCCGCCCGCCGTGAG GGTGGGCTGGAAAGGACCCCCACAATCCCGCCCGCCGTGAG < 41bp 0.521283922994583 0.755186697529057 0.30735105 0.2371017 prediction 0.467805549068949 Functional Gain - OR4E1;LINC02332 ENSG00000211777 UTR5 Human TR_V_gene chr14:22192102 chr14:22192103 . . 0 22 hm5C_associated_SNPs_113519 0 0 0 0 1 OR4E1;LINC02332 chr14:22192181 5'GT 22192181 Upstream 79bp
chr22 50632045 50632045 1 + C A rs6010154 50632044 + 50632024 50632064 41 TGCCGTCAGAGGCTTCAGAGCCGGTGCCCAGGGTGCTTTCT TGCCGTCAGAGGCTTCAGAGCAGGTGCCCAGGGTGCTTTCT < 41bp 0.463144923460187 0.733901989482274 0.5159724 0.8605863 prediction 0.467803978964548 Functional Gain - TRABD ENSG00000170638 CDS Human protein_coding chr22:50632044 chr22:50632045 nonsynonymous SNV 0.027 0 22 hm5C_associated_SNPs_113520 0 0 1 0 2 TRABD chr22:50632005 3'AG 50632005 Downstream 41bp
chr22 50632045 50632045 1 + C A rs6010154 50632044 + 50632024 50632064 41 TGCCGTCAGAGGCTTCAGAGCCGGTGCCCAGGGTGCTTTCT TGCCGTCAGAGGCTTCAGAGCAGGTGCCCAGGGTGCTTTCT < 41bp 0.463144923460187 0.733901989482274 0.5159724 0.8605863 prediction 0.467803978964548 Functional Gain - TRABD ENSG00000170638 CDS Human protein_coding chr22:50632044 chr22:50632045 nonsynonymous SNV 0.027 0 22 hm5C_associated_SNPs_113520 0 0 1 0 2 TRABD chr22:50632083 5'GT 50632083 Upstream 39bp
chr19 49867855 49867855 1 + C T GBM 49867854 + 49867834 49867874 41 CACAGCCTCCCCACCTGCCCCCGCAAGGCGGCATCTGCTGG CACAGCCTCCCCACCTGCCCCTGCAAGGCGGCATCTGCTGG < 41bp 0.542092573421428 0.77598353591687 0.1371103 0.334959 prediction 0.467781924990883 Functional Gain - DKKL1 ENSG00000104901 CDS Human protein_coding chr19:49867854 chr19:49867855 synonymous SNV . 0 22 hm5C_associated_SNPs_113522 0 0 0 0 1 DKKL1 chr19:49867839 3'AG 49867839 Downstream 17bp
chr5 138260294 138260294 1 + C T UCEC 138260293 + 138260273 138260313 41 ACAGCTGGTGCAATTCGAGGCCGGGCAGCCCGGGTCATTCA ACAGCTGGTGCAATTCGAGGCTGGGCAGCCCGGGTCATTCA < 41bp 0.528878704702324 0.762767972432149 0.7744796 0.77985454 prediction 0.46777853545965 Functional Gain - CTNNA1 ENSG00000044115 CDS Human protein_coding chr5:138260293 chr5:138260294 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_113523 0 0 1 0 1 CTNNA1 chr5:138260199 3'AG 138260199 Downstream 96bp
chr14 100380990 100380990 1 + T C BLCA 100380987 + 100380967 100381007 41 GGCATGACAAGCATGCCACTCTCTGGGACGCTGTGGGTCAC GGCATGACAAGCATGCCACTCTCCGGGACGCTGTGGGTCAC < 41bp 0.512188620681641 0.74607143816174 0.113218546 0.08840731 prediction 0.467765634960199 Functional Gain - EML1 ENSG00000066629 CDS Human protein_coding chr14:100380987 chr14:100380990 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_113525 0 0 0 0 1 EML1 chr14:100381034 5'GT 100381034 Upstream 45bp
chr12 31253967 31253967 1 + T C COAD 31253965 + 31253945 31253985 41 CCCTGGCTCTTACCAGGTCACGTGATCCCTCCAGACAACAT CCCTGGCTCTTACCAGGTCACGCGATCCCTCCAGACAACAT < 41bp 0.547357570516779 0.781236129584152 0.038269818 0.06362948 prediction 0.467757118134746 Functional Gain - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31253965 chr12:31253967 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_113526 0 0 1 0 2 DDX11 chr12:31253961 3'AG 31253961 Downstream 7bp
chr12 31253967 31253967 1 + T C COAD 31253965 + 31253945 31253985 41 CCCTGGCTCTTACCAGGTCACGTGATCCCTCCAGACAACAT CCCTGGCTCTTACCAGGTCACGCGATCCCTCCAGACAACAT < 41bp 0.547357570516779 0.781236129584152 0.038269818 0.06362948 prediction 0.467757118134746 Functional Gain - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31253965 chr12:31253967 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_113526 0 0 1 0 2 DDX11 chr12:31254064 5'GT 31254064 Upstream 98bp
chr5 98109712 98109712 1 + A G rs10078777 98109709 + 98109689 98109729 41 GCCCATGCCGCAGCCACGGGCCCAGACCCGCCACGGCGCCC GCCCATGCCGCAGCCACGGGCCCGGACCCGCCACGGCGCCC < 41bp 0.530167738848145 0.764042050975474 0.25829014 0.6525675 prediction 0.467748624254657 Functional Gain - RGMB ENSG00000174136 CDS Human protein_coding chr5:98109709 chr5:98109712 nonsynonymous SNV 0.097 1 24 hm5C_associated_SNPs_113528 0 0 0 0 1 RGMB chr5:98109657 3'AG 98109657 Downstream 56bp
chr9 117033022 117033022 1 + T C rs4143245 117033020 + 117033000 117033040 41 TTTTCCAGGGAGAGCCAGGCCTTGAGGGTGACAGTGGCCCC TTTTCCAGGGAGAGCCAGGCCTCGAGGGTGACAGTGGCCCC < 41bp 0.446364172165751 0.733871793122004 0.3892237 0.4877777 prediction 0.467743586244009 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117033020 chr9:117033022 synonymous SNV . 0 23 hm5C_associated_SNPs_113529 0 0 1 0 2 COL27A1 chr9:117033008 3'AG 117033008 Downstream 15bp
chr9 117033022 117033022 1 + T C rs4143245 117033020 + 117033000 117033040 41 TTTTCCAGGGAGAGCCAGGCCTTGAGGGTGACAGTGGCCCC TTTTCCAGGGAGAGCCAGGCCTCGAGGGTGACAGTGGCCCC < 41bp 0.446364172165751 0.733871793122004 0.3892237 0.4877777 prediction 0.467743586244009 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117033020 chr9:117033022 synonymous SNV . 0 23 hm5C_associated_SNPs_113529 0 0 1 0 2 COL27A1 chr9:117033061 5'GT 117033061 Upstream 40bp
chrX 37526580 37526580 1 + C T PAAD 37526579 + 37526559 37526599 41 CTTATCTGGTTTCCAAGAAACCGCAGTACCTGGACACATGT CTTATCTGGTTTCCAAGAAACTGCAGTACCTGGACACATGT < 41bp 0.472906946865533 0.73387143061664 0.1111809 0.22463468 prediction 0.46774286123328 Functional Gain - LANCL3 ENSG00000147036 CDS Human protein_coding chrX:37526579 chrX:37526580 nonsynonymous SNV 0.986 3 22 hm5C_associated_SNPs_113531 0 0 0 0 1 LANCL3 chrX:37526535 3'AG 37526535 Downstream 46bp
chr19 16989156 16989156 1 + C T UCEC 16989155 + 16989135 16989175 41 GATGGTGTTCATCGTGAACTCCGAGGACTACATGTACCGTC GATGGTGTTCATCGTGAACTCTGAGGACTACATGTACCGTC < 41bp 0.521983459077791 0.755852968177897 0.7385545 0.21120104 prediction 0.467739018200212 Functional Gain - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16989155 chr19:16989156 synonymous SNV . 0 22 hm5C_associated_SNPs_113532 0 0 1 0 1 SIN3B chr19:16989201 5'GT 16989201 Upstream 46bp
chr9 135447838 135447838 1 + C A LUSC 135447837 + 135447817 135447857 41 CAGAGAGCATTAAAAGCCCACCGGGAAGAGTGTGCCGTGCG CAGAGAGCATTAAAAGCCCACAGGGAAGAGTGTGCCGTGCG < 41bp 0.47457250576967 0.733868099528394 0.8766703 0.9178599 prediction 0.467736199056787 Functional Gain - CFAP77 ENSG00000188523 CDS Human protein_coding chr9:135447837 chr9:135447838 synonymous SNV . 0 22 hm5C_associated_SNPs_113533 0 0 0 0 1 CFAP77 chr9:135447775 3'AG 135447775 Downstream 64bp
chr7 44805845 44805845 1 + C T SKCM 44805844 + 44805824 44805864 41 CCCAACCCTTGCTGAGTTCACCCCGGGACCACCCCCCATCT CCCAACCCTTGCTGAGTTCACTCCGGGACCACCCCCCATCT < 41bp 0.460065244452804 0.733867220672541 0.24920624 0.30428973 prediction 0.467734441345083 Functional Gain - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44805844 chr7:44805845 synonymous SNV . 0 22 hm5C_associated_SNPs_113535 0 0 1 0 2 ZMIZ2 chr7:44805763 3'AG 44805763 Downstream 83bp
chr7 44805845 44805845 1 + C T SKCM 44805844 + 44805824 44805864 41 CCCAACCCTTGCTGAGTTCACCCCGGGACCACCCCCCATCT CCCAACCCTTGCTGAGTTCACTCCGGGACCACCCCCCATCT < 41bp 0.460065244452804 0.733867220672541 0.24920624 0.30428973 prediction 0.467734441345083 Functional Gain - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44805844 chr7:44805845 synonymous SNV . 0 22 hm5C_associated_SNPs_113535 0 0 1 0 2 ZMIZ2 chr7:44805932 5'GT 44805932 Upstream 88bp
chr6 26458895 26458895 1 + C A ESCA 26458894 + 26458874 26458914 41 GCTGCTGCCCTGCACTTCTCCCGGCCAGCCTCCCTCCTCCT GCTGCTGCCCTGCACTTCTCCAGGCCAGCCTCCCTCCTCCT < 41bp 0.476828389124478 0.733864223569892 0.2999943 0.8653066 prediction 0.467728447139784 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26458894 chr6:26458895 synonymous SNV . 0 22 hm5C_associated_SNPs_113537 0 0 1 0 2 BTN2A1 chr6:26458835 3'AG 26458835 Downstream 61bp
chr6 26458895 26458895 1 + C A ESCA 26458894 + 26458874 26458914 41 GCTGCTGCCCTGCACTTCTCCCGGCCAGCCTCCCTCCTCCT GCTGCTGCCCTGCACTTCTCCAGGCCAGCCTCCCTCCTCCT < 41bp 0.476828389124478 0.733864223569892 0.2999943 0.8653066 prediction 0.467728447139784 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26458894 chr6:26458895 synonymous SNV . 0 22 hm5C_associated_SNPs_113537 0 0 1 0 2 BTN2A1 chr6:26458946 5'GT 26458946 Upstream 52bp
chr5 424017 424017 1 + C T PRAD 424016 + 423996 424036 41 GTGGGGCACAGGCACGCCCACCGAGTACTCGGCCTTCCTGA GTGGGGCACAGGCACGCCCACTGAGTACTCGGCCTTCCTGA < 41bp 0.528526063581765 0.762386843364799 0.51758116 0.09100515 prediction 0.467721559566067 Functional Gain - AHRR ENSG00000063438 CDS Human protein_coding chr5:424016 chr5:424017 synonymous SNV . 0 22 hm5C_associated_SNPs_113538 0 0 1 0 2 AHRR chr5:423956 3'AG 423956 Downstream 62bp
chr5 424017 424017 1 + C T PRAD 424016 + 423996 424036 41 GTGGGGCACAGGCACGCCCACCGAGTACTCGGCCTTCCTGA GTGGGGCACAGGCACGCCCACTGAGTACTCGGCCTTCCTGA < 41bp 0.528526063581765 0.762386843364799 0.51758116 0.09100515 prediction 0.467721559566067 Functional Gain - AHRR ENSG00000063438 CDS Human protein_coding chr5:424016 chr5:424017 synonymous SNV . 0 22 hm5C_associated_SNPs_113538 0 0 1 0 2 AHRR chr5:424092 5'GT 424092 Upstream 76bp
chr1 78024306 78024306 1 + C A LUAD 78024305 + 78024285 78024325 41 AGATAAATGCAGAGGGAACACCAGAGGACGTTTTTCTTCAA AGATAAATGCAGAGGGAACACAAGAGGACGTTTTTCTTCAA < 41bp 0.513843752149976 0.747700769272033 0.48433214 0.4359157 prediction 0.467714034244115 Functional Gain - AK5 ENSG00000154027 CDS Human protein_coding chr1:78024305 chr1:78024306 nonsynonymous SNV 0.992 1 22 hm5C_associated_SNPs_113540 0 0 0 0 1 AK5 chr1:78024287 3'AG 78024287 Downstream 20bp
chr11 65403915 65403915 1 + C A COAD 65403914 + 65403894 65403934 41 GGCTGGGGGCCGCGGTCCTCCCTGAGTGGCTCTGGTGATGG GGCTGGGGGCCGCGGTCCTCCATGAGTGGCTCTGGTGATGG < 41bp 0.540438355261784 0.774286835570884 0.15087023 0.35017008 prediction 0.4676969606182 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403914 chr11:65403915 nonsynonymous SNV 0.918 0 22 hm5C_associated_SNPs_113543 0 0 1 0 1 PCNX3 chr11:65403862 3'AG 65403862 Downstream 54bp
chr20 44444315 44444315 1 + C T SKCM 44444314 + 44444294 44444334 41 GGTAACATATGCCTGGACATCCTGAAGGAAAAGTGGTCTGC GGTAACATATGCCTGGACATCTTGAAGGAAAAGTGGTCTGC < 41bp 0.57374737039948 0.807586100299753 0.23675263 0.31224883 prediction 0.467677459800546 Functional Gain - UBE2C ENSG00000175063 CDS Human protein_coding chr20:44444314 chr20:44444315 synonymous SNV . 0 22 hm5C_associated_SNPs_113547 0 0 1 0 1 UBE2C chr20:44444384 5'GT 44444384 Upstream 70bp
chr1 44134853 44134853 1 + C T SKCM 44134852 + 44134832 44134872 41 GTGAGTCAGAGTGAGCTCTTCCCCAAGGAGGATCTGAGTTC GTGAGTCAGAGTGAGCTCTTCTCCAAGGAGGATCTGAGTTC < 41bp 0.589455845776877 0.823294110407953 0.19246432 0.95179677 prediction 0.467676529262151 Functional Gain - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44134852 chr1:44134853 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_113548 0 0 1 0 1 KDM4A chr1:44134771 3'AG 44134771 Downstream 83bp
chr1 206646649 206646649 1 + C T HNSC 206646648 + 206646628 206646668 41 ACTGCCAGTGTGTACAAGGCCCGCAACAAGGTAGGAAGCAA ACTGCCAGTGTGTACAAGGCCTGCAACAAGGTAGGAAGCAA < 41bp 0.52959114339566 0.763418626623046 0.17525697 0.3875153 prediction 0.467654966454772 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206646648 chr1:206646649 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_113553 0 0 0 0 1 IKBKE chr1:206646657 5'GT 206646657 Upstream 9bp
chr14 74327274 74327274 1 + C T HNSC 74327273 + 74327253 74327293 41 AATCCAGTGGCAGAGAATTTCCGAATGGAAGAAGTCTATTT AATCCAGTGGCAGAGAATTTCTGAATGGAAGAAGTCTATTT < 41bp 0.488690777194567 0.733823091182704 0.49700823 0.40812343 prediction 0.467646182365409 Functional Gain - PTGR2 ENSG00000140043;ENSG00000258653 CDS Human other chr14:74327273 chr14:74327274 stopgain 0.991 1 22 hm5C_associated_SNPs_113554 0 0 1 0 2 PTGR2 chr14:74327242 3'AG 74327242 Downstream 33bp
chr14 74327274 74327274 1 + C T HNSC 74327273 + 74327253 74327293 41 AATCCAGTGGCAGAGAATTTCCGAATGGAAGAAGTCTATTT AATCCAGTGGCAGAGAATTTCTGAATGGAAGAAGTCTATTT < 41bp 0.488690777194567 0.733823091182704 0.49700823 0.40812343 prediction 0.467646182365409 Functional Gain - PTGR2 ENSG00000140043;ENSG00000258653 CDS Human other chr14:74327273 chr14:74327274 stopgain 0.991 1 22 hm5C_associated_SNPs_113554 0 0 1 0 2 PTGR2 chr14:74327360 5'GT 74327360 Upstream 87bp
chr1 173743452 173743452 1 + C T UCEC 173743451 + 173743431 173743471 41 TCCCTCACTGCAGGTATGATCCGAAGGAGAACAAGTGGACT TCCCTCACTGCAGGTATGATCTGAAGGAGAACAAGTGGACT < 41bp 0.487336677803834 0.733822855375473 0.42397425 0.28032392 prediction 0.467645710750945 Functional Gain - KLHL20 ENSG00000076321 CDS Human protein_coding chr1:173743451 chr1:173743452 nonsynonymous SNV 0.988 4 22 hm5C_associated_SNPs_113555 0 0 1 0 1 KLHL20 chr1:173743444 3'AG 173743444 Downstream 9bp
chr17 65529043 65529043 1 + C T rs529862745 65529042 + 65529022 65529062 41 CCATGGCAATGGGCAGTTCACCGAGAAGCGGGTGTATCTCA CCATGGCAATGGGCAGTTCACTGAGAAGCGGGTGTATCTCA < 41bp 0.519205591466322 0.753028078752969 0.89234513 0.6724188 prediction 0.467644974573292 Functional Gain - PITPNC1 ENSG00000154217 CDS Human protein_coding chr17:65529042 chr17:65529043 synonymous SNV . 0 22 hm5C_associated_SNPs_113557 0 0 0 0 1 PITPNC1 chr17:65529066 5'GT 65529066 Upstream 24bp
chr16 846798 846798 1 + C A rs742317 846794 + 846774 846814 41 CCAGACGAAGCAGCTCATCGCCCGCGAGATCGAGGTGGAGA CCAGACGAAGCAGCTCATCGCCCGAGAGATCGAGGTGGAGA < 41bp 0.324242245032108 0.733812587420734 0.13464388 0.416257 prediction 0.467625174841467 Functional Gain - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:846794 chr16:846798 synonymous SNV . 0 25 hm5C_associated_SNPs_113560 0 0 1 0 2 CHTF18 chr16:846717 3'AG 846717 Downstream 82bp
chr16 846798 846798 1 + C A rs742317 846794 + 846774 846814 41 CCAGACGAAGCAGCTCATCGCCCGCGAGATCGAGGTGGAGA CCAGACGAAGCAGCTCATCGCCCGAGAGATCGAGGTGGAGA < 41bp 0.324242245032108 0.733812587420734 0.13464388 0.416257 prediction 0.467625174841467 Functional Gain - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:846794 chr16:846798 synonymous SNV . 0 25 hm5C_associated_SNPs_113560 0 0 1 0 2 CHTF18 chr16:846861 5'GT 846861 Upstream 64bp
chr17 42428482 42428482 1 + C T LIHC 42428481 + 42428461 42428501 41 GATCCAGAGTAAGTGCCTCTCCAAGGAGAACGCTACCACGG GATCCAGAGTAAGTGCCTCTCTAAGGAGAACGCTACCACGG < 41bp 0.542138419662938 0.775949782066363 0.466605 0.23756582 prediction 0.467622724806852 Functional Gain - GRN ENSG00000030582 CDS Human protein_coding chr17:42428481 chr17:42428482 synonymous SNV . 0 22 hm5C_associated_SNPs_113561 0 0 1 0 2 GRN chr17:42428405 3'AG 42428405 Downstream 78bp
chr17 42428482 42428482 1 + C T LIHC 42428481 + 42428461 42428501 41 GATCCAGAGTAAGTGCCTCTCCAAGGAGAACGCTACCACGG GATCCAGAGTAAGTGCCTCTCTAAGGAGAACGCTACCACGG < 41bp 0.542138419662938 0.775949782066363 0.466605 0.23756582 prediction 0.467622724806852 Functional Gain - GRN ENSG00000030582 CDS Human protein_coding chr17:42428481 chr17:42428482 synonymous SNV . 0 22 hm5C_associated_SNPs_113561 0 0 1 0 2 GRN chr17:42428531 5'GT 42428531 Upstream 50bp
chr8 11219308 11219308 1 + A G rs2572373 11219305 + 11219285 11219325 41 TGTCCAAGGTCCACGCGGAGCTCATGGGAGAAGTAAGCATC TGTCCAAGGTCCACGCGGAGCTCGTGGGAGAAGTAAGCATC < 41bp 0.508900290774551 0.742708579785635 0.3881209 0.34787267 prediction 0.467616578022168 Functional Gain - TDH ENSG00000154316 ncRNA_exonic Human transcribed_unitary_pseudogene chr8:11219305 chr8:11219308 . . 0 24 hm5C_associated_SNPs_113562 0 0 0 2 1 TDH chr8:11219316 5'GT 11219316 Upstream 9bp
chr20 57876694 57876694 1 + C T SKCM 57876693 + 57876673 57876713 41 GGCCCCTGAGCACCACCGATCCAGGCGCTGCACGTGCTTCA GGCCCCTGAGCACCACCGATCTAGGCGCTGCACGTGCTTCA < 41bp 0.527238055080489 0.761044128922101 0.9114286 0.73450875 prediction 0.467612147683222 Functional Gain - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57876693 chr20:57876694 synonymous SNV . 0 22 hm5C_associated_SNPs_113563 0 0 0 0 1 EDN3 chr20:57876777 5'GT 57876777 Upstream 84bp
chr9 72929701 72929701 1 + C T LUSC 72929700 + 72929680 72929720 41 GAGTAAATGCTGTTATTGCTCCCAAGAGTTCATATGCAGAC GAGTAAATGCTGTTATTGCTCTCAAGAGTTCATATGCAGAC < 41bp 0.475961135403138 0.733803894422055 0.036691755 0.0109806955 prediction 0.467607788844111 Functional Gain - SMC5 ENSG00000198887 CDS Human protein_coding chr9:72929700 chr9:72929701 nonsynonymous SNV 0.955 4 22 hm5C_associated_SNPs_113564 0 0 1 0 2 SMC5 chr9:72929658 3'AG 72929658 Downstream 44bp
chr9 72929701 72929701 1 + C T LUSC 72929700 + 72929680 72929720 41 GAGTAAATGCTGTTATTGCTCCCAAGAGTTCATATGCAGAC GAGTAAATGCTGTTATTGCTCTCAAGAGTTCATATGCAGAC < 41bp 0.475961135403138 0.733803894422055 0.036691755 0.0109806955 prediction 0.467607788844111 Functional Gain - SMC5 ENSG00000198887 CDS Human protein_coding chr9:72929700 chr9:72929701 nonsynonymous SNV 0.955 4 22 hm5C_associated_SNPs_113564 0 0 1 0 2 SMC5 chr9:72929752 5'GT 72929752 Upstream 52bp
chr18 11881066 11881066 1 + C A LIHC 11881065 + 11881045 11881085 41 GCCGTGGACACAGAGAACATCCGCAGGGTGTTCAACGACTG GCCGTGGACACAGAGAACATCAGCAGGGTGTTCAACGACTG < 41bp 0.539846670768212 0.773650086200048 0.09392303 0.2611755 prediction 0.467606830863671 Functional Gain - GNAL ENSG00000141404 CDS Human protein_coding chr18:11881065 chr18:11881066 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_113565 0 0 0 0 1 GNAL chr18:11880988 3'AG 11880988 Downstream 79bp
chr15 91500068 91500068 1 + T A BLCA 91500064 + 91500044 91500084 41 GCCAGGTGCACAGCCCCAGTCCGCTGCGGGCGGGCGTCGAC GCCAGGTGCACAGCCCCAGTCCGCAGCGGGCGGGCGTCGAC < 41bp 0.644558103167127 0.878360608083753 0.22485727 0.22782901 prediction 0.467605009833252 Functional Gain - RCCD1 ENSG00000166965 CDS Human protein_coding chr15:91500064 chr15:91500068 nonsynonymous SNV 0.020 4 25 hm5C_associated_SNPs_113566 0 0 1 0 1 RCCD1 chr15:91500130 5'GT 91500130 Upstream 63bp
chr12 121655066 121655066 1 + T A UCEC 121655062 + 121655042 121655082 41 ATTCCGGATCTGGGATGTGGCGGATTATGTGATACCAGCTC ATTCCGGATCTGGGATGTGGCGGAATATGTGATACCAGCTC < 41bp 0.630713527209251 0.864513537759596 0.41194093 0.63595206 prediction 0.46760002110069 Functional Gain - P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121655062 chr12:121655066 nonsynonymous SNV 0.984 1 25 hm5C_associated_SNPs_113567 0 0 1 0 1 P2RX4 chr12:121655084 5'GT 121655084 Upstream 19bp
chr12 15742501 15742501 1 + C T UCEC 15742500 + 15742480 15742520 41 GTGTCAGAAATGAGGTCATACCGGATGTCTATGGTACAGAC GTGTCAGAAATGAGGTCATACTGGATGTCTATGGTACAGAC < 41bp 0.485914131865037 0.73379932710209 0.75362706 0.38820967 prediction 0.467598654204179 Functional Gain - PTPRO ENSG00000151490 CDS Human protein_coding chr12:15742500 chr12:15742501 nonsynonymous SNV 0.429 5 22 hm5C_associated_SNPs_113568 0 0 0 0 1 PTPRO chr12:15742524 5'GT 15742524 Upstream 24bp
chr5 170863205 170863205 1 + C T STAD 170863204 + 170863184 170863224 41 CGGCTGTACCAGCTCTACAGCCGGACCAGTGGGAAACACAT CGGCTGTACCAGCTCTACAGCTGGACCAGTGGGAAACACAT < 41bp 0.495490636758604 0.733790504746194 0.6396464 0.31809866 prediction 0.467581009492388 Functional Gain - FGF18 ENSG00000156427 CDS Human protein_coding chr5:170863204 chr5:170863205 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_113570 0 0 1 0 1 FGF18 chr5:170863277 5'GT 170863277 Upstream 73bp
chr1 116563415 116563415 1 + C G UCEC 116563411 + 116563391 116563431 41 ATATGAGTTCTTTGCAGTAACTCGCTTCCTGGTGGGCATGA ATATGAGTTCTTTGCAGTAACTCGGTTCCTGGTGGGCATGA < 41bp 0.601080849343339 0.834858408091551 0.027900219 0.1348306 prediction 0.467555117496423 Functional Gain - SLC22A15 ENSG00000163393 CDS Human protein_coding chr1:116563411 chr1:116563415 synonymous SNV . 0 25 hm5C_associated_SNPs_113573 0 0 1 0 2 SLC22A15 chr1:116563342 3'AG 116563342 Downstream 74bp
chr1 116563415 116563415 1 + C G UCEC 116563411 + 116563391 116563431 41 ATATGAGTTCTTTGCAGTAACTCGCTTCCTGGTGGGCATGA ATATGAGTTCTTTGCAGTAACTCGGTTCCTGGTGGGCATGA < 41bp 0.601080849343339 0.834858408091551 0.027900219 0.1348306 prediction 0.467555117496423 Functional Gain - SLC22A15 ENSG00000163393 CDS Human protein_coding chr1:116563411 chr1:116563415 synonymous SNV . 0 25 hm5C_associated_SNPs_113573 0 0 1 0 2 SLC22A15 chr1:116563506 5'GT 116563506 Upstream 92bp
chr5 137756576 137756576 1 + C T UCEC 137756575 + 137756555 137756595 41 CCTTCGAGACCTCCTTCACTCCGGGCCGGGAAAACTTCCTC CCTTCGAGACCTCCTTCACTCTGGGCCGGGAAAACTTCCTC < 41bp 0.542347235780316 0.776123687622303 0.40191296 0.21845645 prediction 0.467552903683974 Functional Gain - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137756575 chr5:137756576 synonymous SNV . 0 22 hm5C_associated_SNPs_113574 0 0 1 0 1 KDM3B chr5:137756651 5'GT 137756651 Upstream 76bp
chr1 22923859 22923859 1 + C A rs144329757 22923858 + 22923838 22923878 41 CCCCGGGAAAGCTCCCAGAGCCCCAGTTCTATGCGGAACCC CCCCGGGAAAGCTCCCAGAGCACCAGTTCTATGCGGAACCC < 41bp 0.481014936549369 0.733768002101342 0.03612876 0.077385336 prediction 0.467536004202683 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22923858 chr1:22923859 nonsynonymous SNV 0.648 0 22 hm5C_associated_SNPs_113576 0 0 0 0 1 EPHA8 chr1:22923805 3'AG 22923805 Downstream 55bp
chr20 49197898 49197898 1 + C T UCEC 49197897 + 49197877 49197917 41 CAAAGGGGAGCCGTCACTGCCCGAGAAGGACGAGGACCATG CAAAGGGGAGCCGTCACTGCCTGAGAAGGACGAGGACCATG < 41bp 0.516606595702142 0.750371633315261 0.19877067 0.16109258 prediction 0.467530075226237 Functional Gain - PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49197897 chr20:49197898 synonymous SNV . 0 22 hm5C_associated_SNPs_113578 0 0 1 0 1 PTPN1 chr20:49197802 3'AG 49197802 Downstream 97bp
chr3 52281727 52281727 1 + C T rs146546146 52281726 + 52281706 52281746 41 GATCGGGCGGGAGCTGGAGGCCTCAGGCCAGATGGGCGGCT GATCGGGCGGGAGCTGGAGGCTTCAGGCCAGATGGGCGGCT < 41bp 0.479285598941454 0.733744186678307 0.814643 0.87729645 prediction 0.467488373356614 Functional Gain - PPM1M ENSG00000164088 CDS Human protein_coding chr3:52281726 chr3:52281727 synonymous SNV . 0 22 hm5C_associated_SNPs_113583 0 0 0 0 2 PPM1M chr3:52281698 3'AG 52281698 Downstream 30bp
chr3 52281727 52281727 1 + C T rs146546146 52281726 + 52281706 52281746 41 GATCGGGCGGGAGCTGGAGGCCTCAGGCCAGATGGGCGGCT GATCGGGCGGGAGCTGGAGGCTTCAGGCCAGATGGGCGGCT < 41bp 0.479285598941454 0.733744186678307 0.814643 0.87729645 prediction 0.467488373356614 Functional Gain - PPM1M ENSG00000164088 CDS Human protein_coding chr3:52281726 chr3:52281727 synonymous SNV . 0 22 hm5C_associated_SNPs_113583 0 0 0 0 2 PPM1M chr3:52281810 5'GT 52281810 Upstream 84bp
chr6 44243156 44243156 1 + T A UCEC 44243152 + 44243132 44243172 41 CGCCGCAGGTCTACCACGAACGCGTCAACACGCACGTGGCG CGCCGCAGGTCTACCACGAACGCGACAACACGCACGTGGCG < 41bp 0.632052948988081 0.86578845207314 0.35677296 0.34723535 prediction 0.467471006170118 Functional Gain - TMEM151B ENSG00000178233 CDS Human protein_coding chr6:44243152 chr6:44243156 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_113585 0 0 0 0 1 TMEM151B chr6:44243140 3'AG 44243140 Downstream 17bp
chr7 94054966 94054966 1 + C T STAD 94054965 + 94054945 94054985 41 CCCAGGTCGCGATGGTCAACCCGGACACAAGGTCAGTACAC CCCAGGTCGCGATGGTCAACCTGGACACAAGGTCAGTACAC < 41bp 0.524348438227222 0.758079463308184 0.60822064 0.35143793 prediction 0.467462050161926 Functional Gain - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94054965 chr7:94054966 synonymous SNV . 0 22 hm5C_associated_SNPs_113587 0 0 0 0 2 COL1A2 chr7:94054922 3'AG 94054922 Downstream 45bp
chr7 94054966 94054966 1 + C T STAD 94054965 + 94054945 94054985 41 CCCAGGTCGCGATGGTCAACCCGGACACAAGGTCAGTACAC CCCAGGTCGCGATGGTCAACCTGGACACAAGGTCAGTACAC < 41bp 0.524348438227222 0.758079463308184 0.60822064 0.35143793 prediction 0.467462050161926 Functional Gain - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94054965 chr7:94054966 synonymous SNV . 0 22 hm5C_associated_SNPs_113587 0 0 0 0 2 COL1A2 chr7:94054975 5'GT 94054975 Upstream 10bp
chr19 42796253 42796253 1 + C G TGCT 42796252 + 42796232 42796272 41 CCACAGATCATCCAGCTGACCCCGGTGCCTGTGAGCACACC CCACAGATCATCCAGCTGACCGCGGTGCCTGTGAGCACACC < 41bp 0.411105480775012 0.733729663131547 0.048332155 0.1138871 prediction 0.467459326263093 Functional Gain - CIC ENSG00000079432 CDS Human protein_coding chr19:42796252 chr19:42796253 nonsynonymous SNV 0.921 3 22 hm5C_associated_SNPs_113589 0 0 1 0 1 CIC chr19:42796238 3'AG 42796238 Downstream 16bp
chr16 50759419 50759419 1 + C T LUSC 50759418 + 50759398 50759438 41 AGCCTGGAGGAGAACCATCTCCAGGATGAAGGTGTATGTTC AGCCTGGAGGAGAACCATCTCTAGGATGAAGGTGTATGTTC < 41bp 0.522187525946501 0.755914917478553 0.3252883 0.26853877 prediction 0.467454783064105 Functional Gain - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50759418 chr16:50759419 stopgain 0.988 0 22 hm5C_associated_SNPs_113590 0 0 0 0 2 NOD2 chr16:50759400 3'AG 50759400 Downstream 20bp
chr16 50759419 50759419 1 + C T LUSC 50759418 + 50759398 50759438 41 AGCCTGGAGGAGAACCATCTCCAGGATGAAGGTGTATGTTC AGCCTGGAGGAGAACCATCTCTAGGATGAAGGTGTATGTTC < 41bp 0.522187525946501 0.755914917478553 0.3252883 0.26853877 prediction 0.467454783064105 Functional Gain - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50759418 chr16:50759419 stopgain 0.988 0 22 hm5C_associated_SNPs_113590 0 0 0 0 2 NOD2 chr16:50759483 5'GT 50759483 Upstream 65bp
chr3 140401341 140401341 1 + C A LUAD 140401340 + 140401320 140401360 41 CGCACTGGGAGCAGCGATACCCAGGTGGATGAAGTAAAGTC CGCACTGGGAGCAGCGATACCAAGGTGGATGAAGTAAAGTC < 41bp 0.579962895607435 0.813679268026289 0.7414851 0.7390238 prediction 0.467432744837708 Functional Gain - TRIM42 ENSG00000155890 CDS Human protein_coding chr3:140401340 chr3:140401341 nonsynonymous SNV 0.020 0 22 hm5C_associated_SNPs_113593 0 0 0 0 1 TRIM42 chr3:140401304 3'AG 140401304 Downstream 38bp
chr12 123344323 123344323 1 + T C CESC 123344321 + 123344301 123344341 41 CTCTGTTCTTGGGTGCAGGACATGATGAACCAGGCACGCCA CTCTGTTCTTGGGTGCAGGACACGATGAACCAGGCACGCCA < 41bp 0.588110391798432 0.821826414969395 0.08761117 0.12962562 prediction 0.467432046341926 Functional Gain - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123344321 chr12:123344323 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_113594 0 0 1 0 2 HIP1R chr12:123344319 3'AG 123344319 Downstream 5bp
chr12 123344323 123344323 1 + T C CESC 123344321 + 123344301 123344341 41 CTCTGTTCTTGGGTGCAGGACATGATGAACCAGGCACGCCA CTCTGTTCTTGGGTGCAGGACACGATGAACCAGGCACGCCA < 41bp 0.588110391798432 0.821826414969395 0.08761117 0.12962562 prediction 0.467432046341926 Functional Gain - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123344321 chr12:123344323 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_113594 0 0 1 0 2 HIP1R chr12:123344377 5'GT 123344377 Upstream 55bp
chrX 74520748 74520748 1 + T C UCEC 74520746 + 74520726 74520766 41 CTGTAAAGGTTCTTATAGAACATGGAGTTCAACCCAGTGTT CTGTAAAGGTTCTTATAGAACACGGAGTTCAACCCAGTGTT < 41bp 0.577487326196666 0.811194678222694 0.3082065 0.33238184 prediction 0.467414704052057 Functional Gain - UPRT ENSG00000094841 CDS Human protein_coding chrX:74520746 chrX:74520748 synonymous SNV . 0 23 hm5C_associated_SNPs_113596 0 0 1 4 2 UPRT chrX:74520702 3'AG 74520702 Downstream 47bp
chrX 74520748 74520748 1 + T C UCEC 74520746 + 74520726 74520766 41 CTGTAAAGGTTCTTATAGAACATGGAGTTCAACCCAGTGTT CTGTAAAGGTTCTTATAGAACACGGAGTTCAACCCAGTGTT < 41bp 0.577487326196666 0.811194678222694 0.3082065 0.33238184 prediction 0.467414704052057 Functional Gain - UPRT ENSG00000094841 CDS Human protein_coding chrX:74520746 chrX:74520748 synonymous SNV . 0 23 hm5C_associated_SNPs_113596 0 0 1 4 2 UPRT chrX:74520800 5'GT 74520800 Upstream 53bp
chr16 88874591 88874591 1 + C T rs144721725 88874590 + 88874570 88874610 41 TGGCTCAGCCTCCACCGCATCCGCACCGACACCTACGTCAA TGGCTCAGCCTCCACCGCATCTGCACCGACACCTACGTCAA < 41bp 0.549572296643726 0.783277027918759 0.05671391 0.13599807 prediction 0.467409462550065 Functional Gain - CDT1 ENSG00000167513 CDS Human protein_coding chr16:88874590 chr16:88874591 nonsynonymous SNV 0.010 4 22 hm5C_associated_SNPs_113597 1 0 1 0 1 CDT1 chr16:88874523 3'AG 88874523 Downstream 69bp
chr4 154217121 154217121 1 + C T COAD 154217120 + 154217100 154217140 41 GCAGAAAGCTGTGAAAAGACCCGCAAGCATGTACAGCACTG GCAGAAAGCTGTGAAAAGACCTGCAAGCATGTACAGCACTG < 41bp 0.483475702434696 0.733704393898665 0.11133769 0.3956856 prediction 0.467408787797331 Functional Gain - TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154217120 chr4:154217121 synonymous SNV . 0 22 hm5C_associated_SNPs_113598 0 0 1 0 1 TRIM2 chr4:154217188 5'GT 154217188 Upstream 68bp
chr10 129875961 129875961 1 + C T UCEC 129875960 + 129875940 129875980 41 GCCTGAGATCGGGATTCCCGCCGAGGGCAAAGGCATGATTG GCCTGAGATCGGGATTCCCGCTGAGGGCAAAGGCATGATTG < 41bp 0.48924655045597 0.733700488388856 0.44138408 0.44299835 prediction 0.467400976777712 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129875960 chr10:129875961 synonymous SNV . 0 22 hm5C_associated_SNPs_113599 0 0 0 0 2 PTPRE chr10:129875881 3'AG 129875881 Downstream 81bp
chr10 129875961 129875961 1 + C T UCEC 129875960 + 129875940 129875980 41 GCCTGAGATCGGGATTCCCGCCGAGGGCAAAGGCATGATTG GCCTGAGATCGGGATTCCCGCTGAGGGCAAAGGCATGATTG < 41bp 0.48924655045597 0.733700488388856 0.44138408 0.44299835 prediction 0.467400976777712 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129875960 chr10:129875961 synonymous SNV . 0 22 hm5C_associated_SNPs_113599 0 0 0 0 2 PTPRE chr10:129876047 5'GT 129876047 Upstream 87bp
chr22 32754386 32754386 1 + C A rs9621427 32754382 + 32754362 32754402 41 CACATCAAGGAACTGGAGCCCAAGCTGAAGAAGATTCTACA CACATCAAGGAACTGGAGCCCAAGATGAAGAAGATTCTACA < 41bp 0.328631380695821 0.733684342218382 0.27266586 0.4594089 prediction 0.467368684436764 Functional Gain - RFPL3 ENSG00000128276 CDS Human protein_coding chr22:32754382 chr22:32754386 nonsynonymous SNV 0.003 1 25 hm5C_associated_SNPs_113603 0 0 0 0 1 RFPL3 chr22:32754431 5'GT 32754431 Upstream 46bp
chr15 74573083 74573083 1 + C T BLCA 74573082 + 74573062 74573102 41 CCGCTAAAGAGCCGTTTGTACCAGAAGATGCTGACAGGGAA CCGCTAAAGAGCCGTTTGTACTAGAAGATGCTGACAGGGAA < 41bp 0.569660638009305 0.803339089557329 0.41411 0.1325978 prediction 0.467356903096048 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74573082 chr15:74573083 stopgain 0.040 0 22 hm5C_associated_SNPs_113605 0 0 0 0 2 CCDC33 chr15:74573009 3'AG 74573009 Downstream 75bp
chr15 74573083 74573083 1 + C T BLCA 74573082 + 74573062 74573102 41 CCGCTAAAGAGCCGTTTGTACCAGAAGATGCTGACAGGGAA CCGCTAAAGAGCCGTTTGTACTAGAAGATGCTGACAGGGAA < 41bp 0.569660638009305 0.803339089557329 0.41411 0.1325978 prediction 0.467356903096048 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74573082 chr15:74573083 stopgain 0.040 0 22 hm5C_associated_SNPs_113605 0 0 0 0 2 CCDC33 chr15:74573142 5'GT 74573142 Upstream 60bp
chr1 11896141 11896141 1 + A G rs41275498 11896138 + 11896118 11896158 41 CACCATGCCTTCCCGGTGGTCACAGAGAACCGCGGTAACGA CACCATGCCTTCCCGGTGGTCACGGAGAACCGCGGTAACGA < 41bp 0.494357593458237 0.733667204096114 0.57212436 0.90383613 prediction 0.467334408192229 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11896138 chr1:11896141 synonymous SNV . 0 24 hm5C_associated_SNPs_113607 0 0 0 0 1 CLCN6 chr1:11896210 5'GT 11896210 Upstream 70bp
chr19 3151719 3151719 1 + T G UCEC 3151717 + 3151697 3151737 41 CTCTGCAGCTACCTGTCCCACCTGGAGCGCATCACCGAGGA CTCTGCAGCTACCTGTCCCACCGGGAGCGCATCACCGAGGA < 41bp 0.380768271351972 0.73366560762154 0.1344274 0.46926615 prediction 0.46733121524308 Functional Gain - GNA15 ENSG00000060558 CDS Human protein_coding chr19:3151717 chr19:3151719 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_113608 0 0 0 0 1 GNA15 chr19:3151705 3'AG 3151705 Downstream 15bp
chr17 37815729 37815729 1 + C T COAD 37815728 + 37815708 37815748 41 GTCCAGGAGCGGGAGTACATCCGCCAGGGGAAGGAGGCCAC GTCCAGGAGCGGGAGTACATCTGCCAGGGGAAGGAGGCCAC < 41bp 0.550854018227112 0.78451776003565 0.32076293 0.14466387 prediction 0.467327483617076 Functional Gain - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37815728 chr17:37815729 nonsynonymous SNV 0.980 4 22 hm5C_associated_SNPs_113610 0 0 1 0 2 STARD3 chr17:37815714 3'AG 37815714 Downstream 16bp
chr17 37815729 37815729 1 + C T COAD 37815728 + 37815708 37815748 41 GTCCAGGAGCGGGAGTACATCCGCCAGGGGAAGGAGGCCAC GTCCAGGAGCGGGAGTACATCTGCCAGGGGAAGGAGGCCAC < 41bp 0.550854018227112 0.78451776003565 0.32076293 0.14466387 prediction 0.467327483617076 Functional Gain - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37815728 chr17:37815729 nonsynonymous SNV 0.980 4 22 hm5C_associated_SNPs_113610 0 0 1 0 2 STARD3 chr17:37815806 5'GT 37815806 Upstream 78bp
chr3 195944788 195944788 1 + A G LIHC 195944785 + 195944765 195944805 41 GCCTGCTTCTCTCAGCCTCCCACAGCAGCCCAACTCCTGAG GCCTGCTTCTCTCAGCCTCCCACGGCAGCCCAACTCCTGAG < 41bp 0.550469078532579 0.784128019925583 0.063848615 0.098474115 prediction 0.467317882786008 Functional Gain - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195944785 chr3:195944788 synonymous SNV . 0 24 hm5C_associated_SNPs_113611 0 0 1 0 2 SLC51A chr3:195944713 3'AG 195944713 Downstream 76bp
chr3 195944788 195944788 1 + A G LIHC 195944785 + 195944765 195944805 41 GCCTGCTTCTCTCAGCCTCCCACAGCAGCCCAACTCCTGAG GCCTGCTTCTCTCAGCCTCCCACGGCAGCCCAACTCCTGAG < 41bp 0.550469078532579 0.784128019925583 0.063848615 0.098474115 prediction 0.467317882786008 Functional Gain - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195944785 chr3:195944788 synonymous SNV . 0 24 hm5C_associated_SNPs_113611 0 0 1 0 2 SLC51A chr3:195944807 5'GT 195944807 Upstream 20bp
chrX 65408293 65408293 1 + C A LUSC 65408289 + 65408269 65408309 41 GTGGTAGATGAGAACCTCAGCTGGCATCTCAATGAGAACAT GTGGTAGATGAGAACCTCAGCTGGAATCTCAATGAGAACAT < 41bp 0.312567155564915 0.733655699518071 0.25411254 0.21776327 prediction 0.467311399036141 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65408289 chrX:65408293 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_113612 0 0 1 0 2 HEPH chrX:65408201 3'AG 65408201 Downstream 93bp
chrX 65408293 65408293 1 + C A LUSC 65408289 + 65408269 65408309 41 GTGGTAGATGAGAACCTCAGCTGGCATCTCAATGAGAACAT GTGGTAGATGAGAACCTCAGCTGGAATCTCAATGAGAACAT < 41bp 0.312567155564915 0.733655699518071 0.25411254 0.21776327 prediction 0.467311399036141 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65408289 chrX:65408293 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_113612 0 0 1 0 2 HEPH chrX:65408383 5'GT 65408383 Upstream 91bp
chr1 43166659 43166659 1 + C T LUSC 43166658 + 43166638 43166678 41 AGCTGAGAATTCGTCCGCTCCCGAGGCTGAGCAGGGCGGGG AGCTGAGAATTCGTCCGCTCCTGAGGCTGAGCAGGGCGGGG < 41bp 0.518648331954226 0.752275551503449 0.8900871 0.52756304 prediction 0.467254439098446 Functional Gain - YBX1 ENSG00000065978 CDS Human protein_coding chr1:43166658 chr1:43166659 synonymous SNV . 0 22 hm5C_associated_SNPs_113624 0 0 1 0 1 YBX1 chr1:43166717 5'GT 43166717 Upstream 59bp
chr6 39836620 39836620 1 + C T COAD 39836619 + 39836599 39836639 41 ACCCTGCTGAACGAGCTAGACCGAAGTCTGGGCCGGTACCG ACCCTGCTGAACGAGCTAGACTGAAGTCTGGGCCGGTACCG < 41bp 0.479867100595375 0.733620657960603 0.22511187 0.23313451 prediction 0.467241315921206 Functional Gain - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39836619 chr6:39836620 stopgain 0.514 1 22 hm5C_associated_SNPs_113626 0 0 0 0 2 DAAM2 chr6:39836599 3'AG 39836599 Downstream 22bp
chr6 39836620 39836620 1 + C T COAD 39836619 + 39836599 39836639 41 ACCCTGCTGAACGAGCTAGACCGAAGTCTGGGCCGGTACCG ACCCTGCTGAACGAGCTAGACTGAAGTCTGGGCCGGTACCG < 41bp 0.479867100595375 0.733620657960603 0.22511187 0.23313451 prediction 0.467241315921206 Functional Gain - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39836619 chr6:39836620 stopgain 0.514 1 22 hm5C_associated_SNPs_113626 0 0 0 0 2 DAAM2 chr6:39836709 5'GT 39836709 Upstream 90bp
chr19 49448105 49448105 1 + C T SKCM 49448104 + 49448084 49448124 41 TGAAGGAAAGTCCTGTGATTCCCCTGTCGGAAAGTGAGCTC TGAAGGAAAGTCCTGTGATTCTCCTGTCGGAAAGTGAGCTC < 41bp 0.54738355209538 0.780998516107951 0.09090376 0.13666469 prediction 0.467229928025142 Functional Gain - DHDH ENSG00000104808 CDS Human protein_coding chr19:49448104 chr19:49448105 nonsynonymous SNV 0.953 1 22 hm5C_associated_SNPs_113630 0 0 1 0 1 DHDH chr19:49448081 3'AG 49448081 Downstream 25bp
chr8 74891077 74891077 1 + T G LGG 74891074 + 74891054 74891094 41 GGAAGGCTAATTTATACTGGCAATATGGCCCGAGCAGTGTT GGAAGGCTAATTTATACTGGCAAGATGGCCCGAGCAGTGTT < 41bp 0.353083462752434 0.73361174897164 0.34024352 0.33976442 prediction 0.46722349794328 Functional Gain - TMEM70 ENSG00000175606 CDS Human protein_coding chr8:74891074 chr8:74891077 nonsynonymous SNV 0.966 2 24 hm5C_associated_SNPs_113631 0 0 1 0 3 TMEM70 chr8:74890991 3'AG 74890991 Downstream 87bp
chr8 74891077 74891077 1 + T G LGG 74891074 + 74891054 74891094 41 GGAAGGCTAATTTATACTGGCAATATGGCCCGAGCAGTGTT GGAAGGCTAATTTATACTGGCAAGATGGCCCGAGCAGTGTT < 41bp 0.353083462752434 0.73361174897164 0.34024352 0.33976442 prediction 0.46722349794328 Functional Gain - TMEM70 ENSG00000175606 CDS Human protein_coding chr8:74891074 chr8:74891077 nonsynonymous SNV 0.966 2 24 hm5C_associated_SNPs_113631 0 0 1 0 3 TMEM70 chr8:74891096 5'GT 74891096 Upstream 20bp
chr8 74891077 74891077 1 + T G LGG 74891074 + 74891054 74891094 41 GGAAGGCTAATTTATACTGGCAATATGGCCCGAGCAGTGTT GGAAGGCTAATTTATACTGGCAAGATGGCCCGAGCAGTGTT < 41bp 0.353083462752434 0.73361174897164 0.34024352 0.33976442 prediction 0.46722349794328 Functional Gain - TMEM70 ENSG00000175606 CDS Human protein_coding chr8:74891074 chr8:74891077 nonsynonymous SNV 0.966 2 24 hm5C_associated_SNPs_113631 0 0 1 0 3 TMEM70 chr8:74891110 5'GT 74891110 Upstream 34bp
chr4 40337945 40337945 1 + C A UCEC 40337944 + 40337924 40337964 41 GTGGAAGATACAGATAAAGTCCTGAATGTGACCCTGCAGAT GTGGAAGATACAGATAAAGTCATGAATGTGACCCTGCAGAT < 41bp 0.548188171065094 0.781794442427778 0.12956986 0.26860824 prediction 0.467212542725369 Functional Gain - CHRNA9 ENSG00000174343 CDS Human protein_coding chr4:40337944 chr4:40337945 nonsynonymous SNV 0.887 3 22 hm5C_associated_SNPs_113633 0 0 0 0 1 CHRNA9 chr4:40337989 5'GT 40337989 Upstream 45bp
chr7 116544378 116544378 1 + T C SKCM 116544376 + 116544356 116544396 41 TGCAGTTGAATCATGGAGAACTTCAGTAGAAACTGCTCTGA TGCAGTTGAATCATGGAGAACTCCAGTAGAAACTGCTCTGA < 41bp 0.626537080907303 0.860135727328278 0.29249364 0.92979515 prediction 0.467197292841949 Functional Gain - CAPZA2 ENSG00000198898 CDS Human protein_coding chr7:116544376 chr7:116544378 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_113635 0 0 1 0 1 CAPZA2 chr7:116544437 5'GT 116544437 Upstream 60bp
chr11 113815433 113815433 1 + A G STAD 113815430 + 113815410 113815450 41 CCTTCGAGGGGACACCGATGCTGACAGGCCTAGAGTGGAAC CCTTCGAGGGGACACCGATGCTGGCAGGCCTAGAGTGGAAC < 41bp 0.488047027505641 0.733583545505034 0.1938788 0.57889456 prediction 0.467167091010067 Functional Gain - HTR3B ENSG00000149305 CDS Human protein_coding chr11:113815430 chr11:113815433 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_113640 0 0 0 0 1 HTR3B chr11:113815477 5'GT 113815477 Upstream 45bp
chr2 150069629 150069629 1 + A G LIHC 150069626 + 150069606 150069646 41 TTGCCACCACAGCCGAGATTCTGAACATACGGTAAGGATCG TTGCCACCACAGCCGAGATTCTGGACATACGGTAAGGATCG < 41bp 0.512428158739448 0.746010597492761 0.026738733 0.10463625 prediction 0.467164877506625 Functional Gain - LYPD6B ENSG00000150556 CDS Human protein_coding chr2:150069626 chr2:150069629 nonsynonymous SNV 0.858 0 24 hm5C_associated_SNPs_113641 0 0 0 0 1 LYPD6B chr2:150069636 5'GT 150069636 Upstream 8bp
chr19 50905493 50905493 1 + C T UCEC 50905492 + 50905472 50905512 41 GTACCACGGGCACGGCCCCTCCCCGTTCCTGCGCATCACCG GTACCACGGGCACGGCCCCTCTCCGTTCCTGCGCATCACCG < 41bp 0.547637403207541 0.781211030925824 0.10918617 0.28267428 prediction 0.467147255436565 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905492 chr19:50905493 synonymous SNV . 0 22 hm5C_associated_SNPs_113644 0 0 1 0 1 POLD1 chr19:50905462 3'AG 50905462 Downstream 32bp
chr15 48056059 48056059 1 + C T LIHC 48056058 + 48056038 48056078 41 GTTGGGCAGGCTGTGTATTCCCGCGTGGCCCGCATATGTAA GTTGGGCAGGCTGTGTATTCCTGCGTGGCCCGCATATGTAA < 41bp 0.530366160409133 0.763936589311763 0.20568201 0.12376246 prediction 0.46714085780526 Functional Gain - SEMA6D ENSG00000137872 CDS Human protein_coding chr15:48056058 chr15:48056059 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_113645 0 0 0 0 1 SEMA6D chr15:48056047 3'AG 48056047 Downstream 13bp
chr19 3937280 3937280 1 + T G UCEC 3937277 + 3937257 3937297 41 TTGGGGAAGACGGCTTCAAACAGTGGGACGGTAAGGACAAG TTGGGGAAGACGGCTTCAAACAGGGGGACGGTAAGGACAAG < 41bp 0.691772151277489 0.925338953157847 0.1696049 0.9393729 prediction 0.467133603760715 Functional Gain - NMRK2 ENSG00000077009 CDS Human protein_coding chr19:3937277 chr19:3937280 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_113647 0 0 0 0 3 NMRK2 chr19:3937223 3'AG 3937223 Downstream 58bp
chr19 3937280 3937280 1 + T G UCEC 3937277 + 3937257 3937297 41 TTGGGGAAGACGGCTTCAAACAGTGGGACGGTAAGGACAAG TTGGGGAAGACGGCTTCAAACAGGGGGACGGTAAGGACAAG < 41bp 0.691772151277489 0.925338953157847 0.1696049 0.9393729 prediction 0.467133603760715 Functional Gain - NMRK2 ENSG00000077009 CDS Human protein_coding chr19:3937277 chr19:3937280 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_113647 0 0 0 0 3 NMRK2 chr19:3937238 3'AG 3937238 Downstream 43bp
chr19 3937280 3937280 1 + T G UCEC 3937277 + 3937257 3937297 41 TTGGGGAAGACGGCTTCAAACAGTGGGACGGTAAGGACAAG TTGGGGAAGACGGCTTCAAACAGGGGGACGGTAAGGACAAG < 41bp 0.691772151277489 0.925338953157847 0.1696049 0.9393729 prediction 0.467133603760715 Functional Gain - NMRK2 ENSG00000077009 CDS Human protein_coding chr19:3937277 chr19:3937280 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_113647 0 0 0 0 3 NMRK2 chr19:3937286 5'GT 3937286 Upstream 7bp
chr7 107302103 107302103 1 - G T rs111033423 107302107 - 107302087 107302127 41 GGGAGCTGCGGCGGCTCCGACCTGCCGCCTGGCGCTGCCAT GGGAGCTGCGGCGGCTCCGACCTGACGCCTGGCGCTGCCAT < 41bp 0.352432586578294 0.73355785615201 0.093118906 0.111240625 prediction 0.467115712304021 Functional Gain - SLC26A4 ENSG00000091137 CDS Human antisense chr7:107302107 chr7:107302103 nonsynonymous SNV 0.782 1 25 hm5C_associated_SNPs_113649 2 0 0 0 1 SLC26A4-AS1 chr7:107302047 5'GT 107302047 Upstream 57bp
chr3 69987130 69987130 1 + C T UCEC 69987129 + 69987109 69987149 41 CTGGCGATCATGTCATGCCACCGGTGCCGGGGAGCAGCGCA CTGGCGATCATGTCATGCCACTGGTGCCGGGGAGCAGCGCA < 41bp 0.491156139691481 0.733551497925432 0.14163774 0.18582904 prediction 0.467102995850864 Functional Gain - MITF ENSG00000187098 CDS Human protein_coding chr3:69987129 chr3:69987130 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_113652 0 0 1 0 1 MITF chr3:69987200 5'GT 69987200 Upstream 71bp
chr19 50544992 50544992 1 + C T SKCM 50544991 + 50544971 50545011 41 TTTTCTCTCCCTGCAGACCCCCCAAGACCCAACCTGACCTC TTTTCTCTCCCTGCAGACCCCTCAAGACCCAACCTGACCTC < 41bp 0.558982003225205 0.792527393465799 0.059038818 0.055627972 prediction 0.467090780481187 Functional Gain - ZNF473 ENSG00000142528 CDS Human protein_coding chr19:50544991 chr19:50544992 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_113658 0 0 1 0 2 ZNF473 chr19:50544987 3'AG 50544987 Downstream 6bp
chr19 50544992 50544992 1 + C T SKCM 50544991 + 50544971 50545011 41 TTTTCTCTCCCTGCAGACCCCCCAAGACCCAACCTGACCTC TTTTCTCTCCCTGCAGACCCCTCAAGACCCAACCTGACCTC < 41bp 0.558982003225205 0.792527393465799 0.059038818 0.055627972 prediction 0.467090780481187 Functional Gain - ZNF473 ENSG00000142528 CDS Human protein_coding chr19:50544991 chr19:50544992 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_113658 0 0 1 0 2 ZNF473 chr19:50545076 5'GT 50545076 Upstream 85bp
chr3 197703538 197703538 1 + C A STAD 197703537 + 197703517 197703557 41 GTACTGCACCGGGGAGTGTGCCGCACACACAAAGTGCGGCC GTACTGCACCGGGGAGTGTGCAGCACACACAAAGTGCGGCC < 41bp 0.572956124020812 0.806498713565668 0.04075274 0.083532214 prediction 0.467085179089712 Functional Gain - LMLN ENSG00000185621 CDS Human protein_coding chr3:197703537 chr3:197703538 synonymous SNV . 0 22 hm5C_associated_SNPs_113659 0 0 0 0 2 LMLN chr3:197703469 3'AG 197703469 Downstream 70bp
chr3 197703538 197703538 1 + C A STAD 197703537 + 197703517 197703557 41 GTACTGCACCGGGGAGTGTGCCGCACACACAAAGTGCGGCC GTACTGCACCGGGGAGTGTGCAGCACACACAAAGTGCGGCC < 41bp 0.572956124020812 0.806498713565668 0.04075274 0.083532214 prediction 0.467085179089712 Functional Gain - LMLN ENSG00000185621 CDS Human protein_coding chr3:197703537 chr3:197703538 synonymous SNV . 0 22 hm5C_associated_SNPs_113659 0 0 0 0 2 LMLN chr3:197703586 5'GT 197703586 Upstream 49bp
chr12 27113474 27113474 1 + C T SKCM 27113473 + 27113453 27113493 41 CATGGTACATCGTAACAAGTCCGAAGGATTCTTCCTTGATG CATGGTACATCGTAACAAGTCTGAAGGATTCTTCCTTGATG < 41bp 0.520048394324432 0.75358839264675 0.037914157 0.02395925 prediction 0.467079996644638 Functional Gain - FGFR1OP2 ENSG00000111790 CDS Human protein_coding chr12:27113473 chr12:27113474 synonymous SNV . 0 22 hm5C_associated_SNPs_113662 0 0 1 0 2 FGFR1OP2 chr12:27113448 3'AG 27113448 Downstream 27bp
chr12 27113474 27113474 1 + C T SKCM 27113473 + 27113453 27113493 41 CATGGTACATCGTAACAAGTCCGAAGGATTCTTCCTTGATG CATGGTACATCGTAACAAGTCTGAAGGATTCTTCCTTGATG < 41bp 0.520048394324432 0.75358839264675 0.037914157 0.02395925 prediction 0.467079996644638 Functional Gain - FGFR1OP2 ENSG00000111790 CDS Human protein_coding chr12:27113473 chr12:27113474 synonymous SNV . 0 22 hm5C_associated_SNPs_113662 0 0 1 0 2 FGFR1OP2 chr12:27113561 5'GT 27113561 Upstream 88bp
chr1 38260316 38260316 1 + C G LUAD 38260315 + 38260295 38260335 41 CCCCCCAGACGACTTGGGCTCCAGCTTCTACCCGGAGCTGG CCCCCCAGACGACTTGGGCTCGAGCTTCTACCCGGAGCTGG < 41bp 0.42290767721387 0.73353634019132 0.3517545 0.8750329 prediction 0.467072680382641 Functional Gain - MANEAL ENSG00000185090 CDS Human protein_coding chr1:38260315 chr1:38260316 synonymous SNV . 0 22 hm5C_associated_SNPs_113663 0 0 1 0 1 MANEAL chr1:38260404 5'GT 38260404 Upstream 89bp
chr17 47246220 47246220 1 + A G SKCM 47246217 + 47246197 47246237 41 TGGCCCACACGGAGCGACTCCAAAGAGTTGGCTTTGATCCC TGGCCCACACGGAGCGACTCCAAGGAGTTGGCTTTGATCCC < 41bp 0.481944804443892 0.733534340607723 0.05101773 0.41770267 prediction 0.467068681215447 Functional Gain - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47246217 chr17:47246220 nonsynonymous SNV 0.987 3 24 hm5C_associated_SNPs_113665 0 0 0 0 1 B4GALNT2 chr17:47246262 5'GT 47246262 Upstream 43bp
chr14 93277967 93277967 1 + C T UCEC 93277966 + 93277946 93277986 41 AGCAGAAGCAATTACACTGGCCGAAAGAAAATACTCAGATG AGCAGAAGCAATTACACTGGCTGAAAGAAAATACTCAGATG < 41bp 0.483530605016735 0.733524622943333 0.23721415 0.23892915 prediction 0.467049245886665 Functional Gain - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93277966 chr14:93277967 synonymous SNV . 0 22 hm5C_associated_SNPs_113669 0 0 1 0 1 GOLGA5 chr14:93277896 3'AG 93277896 Downstream 72bp
chr3 38139300 38139300 1 + C T rs187581481 38139299 + 38139279 38139319 41 GCTCCGCCTGGGGCAGAAAGCCACAAACTCCATCCAGATCC GCTCCGCCTGGGGCAGAAAGCTACAAACTCCATCCAGATCC < 41bp 0.55715577009234 0.790668469807166 0.09363097 0.30634433 prediction 0.467025399429651 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38139299 chr3:38139300 synonymous SNV . 0 22 hm5C_associated_SNPs_113675 0 0 0 0 3 DLEC1 chr3:38139235 3'AG 38139235 Downstream 66bp
chr3 38139300 38139300 1 + C T rs187581481 38139299 + 38139279 38139319 41 GCTCCGCCTGGGGCAGAAAGCCACAAACTCCATCCAGATCC GCTCCGCCTGGGGCAGAAAGCTACAAACTCCATCCAGATCC < 41bp 0.55715577009234 0.790668469807166 0.09363097 0.30634433 prediction 0.467025399429651 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38139299 chr3:38139300 synonymous SNV . 0 22 hm5C_associated_SNPs_113675 0 0 0 0 3 DLEC1 chr3:38139263 3'AG 38139263 Downstream 38bp
chr3 38139300 38139300 1 + C T rs187581481 38139299 + 38139279 38139319 41 GCTCCGCCTGGGGCAGAAAGCCACAAACTCCATCCAGATCC GCTCCGCCTGGGGCAGAAAGCTACAAACTCCATCCAGATCC < 41bp 0.55715577009234 0.790668469807166 0.09363097 0.30634433 prediction 0.467025399429651 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38139299 chr3:38139300 synonymous SNV . 0 22 hm5C_associated_SNPs_113675 0 0 0 0 3 DLEC1 chr3:38139393 5'GT 38139393 Upstream 94bp
chr9 35793951 35793951 1 + A G UCEC 35793948 + 35793928 35793968 41 ATGAGATCCTGCTTCAGGCCCAGAGGGAGAATCTGACCAAT ATGAGATCCTGCTTCAGGCCCAGGGGGAGAATCTGACCAAT < 41bp 0.546813739761437 0.780324187525582 0.52339077 0.89050967 prediction 0.467020895528289 Functional Gain - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35793948 chr9:35793951 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_113676 0 0 0 0 1 NPR2 chr9:35793895 3'AG 35793895 Downstream 57bp
chr2 102955439 102955439 1 + A G STAD 102955436 + 102955416 102955456 41 GAAAGAAATCGTGTGTTTGCCTCAGGCCAACTTCTGAAGTT GAAAGAAATCGTGTGTTTGCCTCGGGCCAACTTCTGAAGTT < 41bp 0.509643447388859 0.743138748381172 0.24641207 0.39342177 prediction 0.466990601984626 Functional Gain - IL1RL1;IL1RL1 ENSG00000115602;ENSG00000115602 exonic;splicing Human protein_coding chr2:102955436 chr2:102955439 synonymous SNV . 0 24 hm5C_associated_SNPs_113683 0 0 0 0 1 IL1RL1 chr2:102955507 5'GT 102955507 Upstream 69bp
chr4 95539223 95539223 1 + T C COAD 95539221 + 95539201 95539241 41 ACACGGAGCATGCCCGAGAGCCTGGACAGCCCAACCTCTGG ACACGGAGCATGCCCGAGAGCCCGGACAGCCCAACCTCTGG < 41bp 0.489683911732734 0.733482418263682 0.3599968 0.29030323 prediction 0.466964836527364 Functional Gain - PDLIM5 ENSG00000163110 CDS Human protein_coding chr4:95539221 chr4:95539223 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_113687 0 0 1 0 1 PDLIM5 chr4:95539155 3'AG 95539155 Downstream 69bp
chr2 38224627 38224627 1 + T A rs533376271 38224623 + 38224603 38224643 41 GTTTGGAAAAATACCATCTTCAACTGTACAAGAAGCTTTAC GTTTGGAAAAATACCATCTTCAACAGTACAAGAAGCTTTAC < 41bp 0.41580011604256 0.733480736715459 0.1299802 0.08610204 prediction 0.466961473430918 Functional Gain - RMDN2 ENSG00000115841 CDS Human protein_coding chr2:38224623 chr2:38224627 synonymous SNV . 0 25 hm5C_associated_SNPs_113689 0 0 0 0 2 RMDN2 chr2:38224559 3'AG 38224559 Downstream 69bp
chr2 38224627 38224627 1 + T A rs533376271 38224623 + 38224603 38224643 41 GTTTGGAAAAATACCATCTTCAACTGTACAAGAAGCTTTAC GTTTGGAAAAATACCATCTTCAACAGTACAAGAAGCTTTAC < 41bp 0.41580011604256 0.733480736715459 0.1299802 0.08610204 prediction 0.466961473430918 Functional Gain - RMDN2 ENSG00000115841 CDS Human protein_coding chr2:38224623 chr2:38224627 synonymous SNV . 0 25 hm5C_associated_SNPs_113689 0 0 0 0 2 RMDN2 chr2:38224657 5'GT 38224657 Upstream 31bp
chrX 69424217 69424217 1 + C A LUAD 69424216 + 69424196 69424236 41 TTTTCAATCAGGAGACCTTCCCTGAGGGCACGTGGTTAAGG TTTTCAATCAGGAGACCTTCCATGAGGGCACGTGGTTAAGG < 41bp 0.46102169200359 0.733477792905167 0.054708302 0.4867749 prediction 0.466955585810334 Functional Gain - DGAT2L6 ENSG00000184210 CDS Human protein_coding chrX:69424216 chrX:69424217 nonsynonymous SNV 0.585 0 22 hm5C_associated_SNPs_113690 0 0 0 0 1 DGAT2L6 chrX:69424155 3'AG 69424155 Downstream 63bp
chr7 128480671 128480671 1 + T A COAD 128480667 + 128480647 128480687 41 TGTTCGAGTGCGAGTACTACCCGGTGGTGCCTGGGAAGTAT TGTTCGAGTGCGAGTACTACCCGGAGGTGCCTGGGAAGTAT < 41bp 0.432368934101466 0.733474804817608 0.6781175 0.89971197 prediction 0.466949609635216 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128480667 chr7:128480671 nonsynonymous SNV 0.870 1 25 hm5C_associated_SNPs_113692 0 0 1 0 2 FLNC chr7:128480602 3'AG 128480602 Downstream 70bp
chr7 128480671 128480671 1 + T A COAD 128480667 + 128480647 128480687 41 TGTTCGAGTGCGAGTACTACCCGGTGGTGCCTGGGAAGTAT TGTTCGAGTGCGAGTACTACCCGGAGGTGCCTGGGAAGTAT < 41bp 0.432368934101466 0.733474804817608 0.6781175 0.89971197 prediction 0.466949609635216 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128480667 chr7:128480671 nonsynonymous SNV 0.870 1 25 hm5C_associated_SNPs_113692 0 0 1 0 2 FLNC chr7:128480728 5'GT 128480728 Upstream 58bp
chr1 161132821 161132821 1 + C A rs1127525 161132817 + 161132797 161132837 41 CTTGCCAATGGTCCAGTTCCCTCTCCACCCCGCCGAGGAGG CTTGCCAATGGTCCAGTTCCCTCTACACCCCGCCGAGGAGG < 41bp 0.305289413527187 0.733459469261499 0.7208506 0.90766203 prediction 0.466918938522997 Functional Gain - USP21 ENSG00000143258 CDS Human protein_coding chr1:161132817 chr1:161132821 nonsynonymous SNV 0.166 0 25 hm5C_associated_SNPs_113695 0 0 1 0 1 USP21 chr1:161132864 5'GT 161132864 Upstream 44bp
chr19 41263268 41263268 1 + C T STAD 41263267 + 41263247 41263287 41 GTCCCTGTACGCCATCTTCTCCCAGTTTGGCCAGATCCTGG GTCCCTGTACGCCATCTTCTCTCAGTTTGGCCAGATCCTGG < 41bp 0.531902553875107 0.765359312746938 0.034348905 0.030560642 prediction 0.466913517743662 Functional Gain - SNRPA ENSG00000077312 CDS Human protein_coding chr19:41263267 chr19:41263268 synonymous SNV . 0 22 hm5C_associated_SNPs_113696 0 0 1 0 1 SNRPA chr19:41263237 3'AG 41263237 Downstream 32bp
chr8 143561143 143561143 1 + C T UCEC 143561142 + 143561122 143561162 41 GTGGCTGCTGTCCGGTGTCCCCGCAACGCCACAGGTGAGGG GTGGCTGCTGTCCGGTGTCCCTGCAACGCCACAGGTGAGGG < 41bp 0.522252469600312 0.755708854161926 0.13235804 0.7884719 prediction 0.466912769123227 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143561142 chr8:143561143 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_113697 0 0 0 0 2 ADGRB1 chr8:143561054 3'AG 143561054 Downstream 90bp
chr8 143561143 143561143 1 + C T UCEC 143561142 + 143561122 143561162 41 GTGGCTGCTGTCCGGTGTCCCCGCAACGCCACAGGTGAGGG GTGGCTGCTGTCCGGTGTCCCTGCAACGCCACAGGTGAGGG < 41bp 0.522252469600312 0.755708854161926 0.13235804 0.7884719 prediction 0.466912769123227 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143561142 chr8:143561143 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_113697 0 0 0 0 2 ADGRB1 chr8:143561155 5'GT 143561155 Upstream 13bp
chr8 104145549 104145549 1 + A G rs73701743 104145546 + 104145526 104145566 41 CCCACTCTTTTTGTCTTGCTCTGAGGATGCCAGGACTTTAA CCCACTCTTTTTGTCTTGCTCTGGGGATGCCAGGACTTTAA < 41bp 0.52349511389413 0.756946513208632 0.09619483 0.4237175 prediction 0.466902798629004 Functional Gain - BAALC-AS2;LINC01181 ENSG00000236939 CDS Human antisense chr8:104145546 chr8:104145549 synonymous SNV . 0 24 hm5C_associated_SNPs_113699 0 0 0 0 1 BAALC-AS2;LINC01181 chr8:104145585 5'GT 104145585 Upstream 37bp
chr20 56138725 56138725 1 + C G SKCM 56138724 + 56138704 56138744 41 CATGATGAACCCCAGCCTCCCCGGGTGGAAGGTTGAGTGCG CATGATGAACCCCAGCCTCCCGGGGTGGAAGGTTGAGTGCG < 41bp 0.642650434715439 0.876098088155651 0.86338776 0.92199546 prediction 0.466895306880422 Functional Gain - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56138724 chr20:56138725 synonymous SNV . 0 22 hm5C_associated_SNPs_113702 0 0 1 0 1 PCK1 chr20:56138783 5'GT 56138783 Upstream 59bp
chr15 45545493 45545493 1 + T C STAD 45545491 + 45545471 45545511 41 GTGAACCCGGGGCTGGAGCTCATGGTAATCACCAGTTTAGT GTGAACCCGGGGCTGGAGCTCACGGTAATCACCAGTTTAGT < 41bp 0.553570800644636 0.787016046807184 0.3663572 0.4938494 prediction 0.466890492325096 Functional Gain - SLC28A2 ENSG00000137860 CDS Human antisense chr15:45545491 chr15:45545493 nonsynonymous SNV 0.979 0 23 hm5C_associated_SNPs_113704 0 0 0 0 2 LOC101928414 chr15:45545398 3'AG 45545398 Downstream 96bp
chr15 45545493 45545493 1 + T C STAD 45545491 + 45545471 45545511 41 GTGAACCCGGGGCTGGAGCTCATGGTAATCACCAGTTTAGT GTGAACCCGGGGCTGGAGCTCACGGTAATCACCAGTTTAGT < 41bp 0.553570800644636 0.787016046807184 0.3663572 0.4938494 prediction 0.466890492325096 Functional Gain - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45545491 chr15:45545493 nonsynonymous SNV 0.979 0 23 hm5C_associated_SNPs_113704 0 0 0 0 2 SLC28A2 chr15:45545494 5'GT 45545494 Upstream 2bp
chr12 57861128 57861128 1 + C T MESO 57861127 + 57861107 57861147 41 GTCCCCCAGTTTGAAGGGTGCCGGAAGTCATACTCACGCCT GTCCCCCAGTTTGAAGGGTGCTGGAAGTCATACTCACGCCT < 41bp 0.484087670048761 0.733440476271348 0.58833236 0.30841774 prediction 0.466880952542697 Functional Gain - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57861127 chr12:57861128 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_113707 0 0 1 0 1 GLI1 chr12:57861116 3'AG 57861116 Downstream 13bp
chr16 57760001 57760001 1 + C T SARC 57760000 + 57759980 57760020 41 AAAATCACAGAGCGGTTCTTCCGCAACCCAGCGAAGCCCGC AAAATCACAGAGCGGTTCTTCTGCAACCCAGCGAAGCCCGC < 41bp 0.543387420120634 0.776824565911374 0.16771954 0.1292741 prediction 0.466874291581481 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57760000 chr16:57760001 nonsynonymous SNV 0.921 4 22 hm5C_associated_SNPs_113709 0 0 0 0 1 DRC7 chr16:57759980 3'AG 57759980 Downstream 22bp
chr2 128366303 128366303 1 + C A LUSC 128366299 + 128366279 128366319 41 GCAGGCGCCGCTGGTCATCCCGGCCGAGGGGCAGAAAAGCC GCAGGCGCCGCTGGTCATCCCGGCAGAGGGGCAGAAAAGCC < 41bp 0.33372601510059 0.733436924616865 0.58103096 0.7822538 prediction 0.466873849233729 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128366299 chr2:128366303 synonymous SNV . 0 25 hm5C_associated_SNPs_113710 0 0 0 0 1 MYO7B chr2:128366283 3'AG 128366283 Downstream 21bp
chr9 101589211 101589211 1 + C T rs59362219 101589210 + 101589190 101589230 41 GCCACGAAGGGTGGCTGGAGCCGCTGCTGCAGAGGTACGTG GCCACGAAGGGTGGCTGGAGCTGCTGCTGCAGAGGTACGTG < 41bp 0.48921364200798 0.733435530411581 0.8473746 0.6218546 prediction 0.466871060823163 Functional Gain - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101589210 chr9:101589211 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_113711 1 0 1 0 1 GALNT12 chr9:101589223 5'GT 101589223 Upstream 13bp
chr8 99142281 99142281 1 + C T UCEC 99142280 + 99142260 99142300 41 GCTCGAAGATGTCACATGAACCGGACGCTAGAATTTAACCG GCTCGAAGATGTCACATGAACTGGACGCTAGAATTTAACCG < 41bp 0.526205589417609 0.75963837513403 0.048013538 0.021898508 prediction 0.466865571432842 Functional Gain - POP1 ENSG00000104356 CDS Human protein_coding chr8:99142280 chr8:99142281 nonsynonymous SNV 0.535 2 22 hm5C_associated_SNPs_113712 0 0 1 0 1 POP1 chr8:99142206 3'AG 99142206 Downstream 76bp
chr1 10460570 10460570 1 + C T COAD 10460569 + 10460549 10460589 41 GTCTCCAAGCTGAAGAAGCCCCGGCGGATCATCCTCCTGGT GTCTCCAAGCTGAAGAAGCCCTGGCGGATCATCCTCCTGGT < 41bp 0.499028395080108 0.733430875909169 0.8202124 0.64232737 prediction 0.466861751818338 Functional Gain - PGD ENSG00000142657 CDS Human protein_coding chr1:10460569 chr1:10460570 nonsynonymous SNV 0.685 4 22 hm5C_associated_SNPs_113714 0 0 1 0 1 PGD chr1:10460629 5'GT 10460629 Upstream 60bp
chr1 158063493 158063493 1 + C T ESCA 158063492 + 158063472 158063512 41 CCACTTACGATGCATTCTGACCGGGAGGATGACACCGCCAG CCACTTACGATGCATTCTGACTGGGAGGATGACACCGCCAG < 41bp 0.555853672759863 0.789283019735983 0.6307336 0.82219565 prediction 0.46685869395224 Functional Gain - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063492 chr1:158063493 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_113715 0 0 0 0 2 KIRREL chr1:158063413 3'AG 158063413 Downstream 81bp
chr1 158063493 158063493 1 + C T ESCA 158063492 + 158063472 158063512 41 CCACTTACGATGCATTCTGACCGGGAGGATGACACCGCCAG CCACTTACGATGCATTCTGACTGGGAGGATGACACCGCCAG < 41bp 0.555853672759863 0.789283019735983 0.6307336 0.82219565 prediction 0.46685869395224 Functional Gain - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063492 chr1:158063493 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_113715 0 0 0 0 2 KIRREL chr1:158063552 5'GT 158063552 Upstream 60bp
chr20 3091053 3091053 1 + T A rs80086747 3091049 + 3091029 3091069 41 GGCAGAGCCTTCCCACCGTGCTGCTGCAGCATCTGGCTTCA GGCAGAGCCTTCCCACCGTGCTGCAGCAGCATCTGGCTTCA < 41bp 0.429294181237523 0.733417791022209 0.09902406 0.14833707 prediction 0.466835582044419 Functional Gain - UBOX5-AS1 ENSG00000235958 ncRNA_exonic Human antisense chr20:3091049 chr20:3091053 . . 0 25 hm5C_associated_SNPs_113720 0 0 0 0 1 UBOX5-AS1 chr20:3091099 5'GT 3091099 Upstream 47bp
chr9 2648271 2648271 1 + T C HNSC 2648269 + 2648249 2648289 41 CACATGTTATCCAGCGTGGACTTGAATGGCCAAGATCGTAG CACATGTTATCCAGCGTGGACTCGAATGGCCAAGATCGTAG < 41bp 0.423801515488914 0.733416977902364 0.10872209 0.58963406 prediction 0.466833955804729 Functional Gain - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2648269 chr9:2648271 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_113721 0 0 0 0 2 VLDLR chr9:2648208 3'AG 2648208 Downstream 64bp
chr9 2648271 2648271 1 + T C HNSC 2648269 + 2648249 2648289 41 CACATGTTATCCAGCGTGGACTTGAATGGCCAAGATCGTAG CACATGTTATCCAGCGTGGACTCGAATGGCCAAGATCGTAG < 41bp 0.423801515488914 0.733416977902364 0.10872209 0.58963406 prediction 0.466833955804729 Functional Gain - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2648269 chr9:2648271 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_113721 0 0 0 0 2 VLDLR chr9:2648347 5'GT 2648347 Upstream 77bp
chr19 14508949 14508949 1 + C T SKCM 14508948 + 14508928 14508968 41 AGCTCAGCCGAGGTCACCATCCAGGTAAGGGCAGGATGCTG AGCTCAGCCGAGGTCACCATCTAGGTAAGGGCAGGATGCTG < 41bp 0.515430278046889 0.748834174482063 0.9188552 0.35558474 prediction 0.466807792870349 Functional Gain - ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14508948 chr19:14508949 stopgain 0.141 0 22 hm5C_associated_SNPs_113722 0 0 1 0 2 ADGRE5 chr19:14508874 3'AG 14508874 Downstream 76bp
chr19 14508949 14508949 1 + C T SKCM 14508948 + 14508928 14508968 41 AGCTCAGCCGAGGTCACCATCCAGGTAAGGGCAGGATGCTG AGCTCAGCCGAGGTCACCATCTAGGTAAGGGCAGGATGCTG < 41bp 0.515430278046889 0.748834174482063 0.9188552 0.35558474 prediction 0.466807792870349 Functional Gain - ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14508948 chr19:14508949 stopgain 0.141 0 22 hm5C_associated_SNPs_113722 0 0 1 0 2 ADGRE5 chr19:14508951 5'GT 14508951 Upstream 3bp
chr11 66291263 66291263 1 + C G rs35209408 66291262 + 66291242 66291282 41 GAACCTCCTGGAGCAGCATTCCCGGGGCCTGCAGGCCGTCA GAACCTCCTGGAGCAGCATTCGCGGGGCCTGCAGGCCGTCA < 41bp 0.648199957048184 0.881589933683865 0.8947326 0.9265505 prediction 0.466779953271362 Functional Gain - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66291262 chr11:66291263 synonymous SNV . 0 22 hm5C_associated_SNPs_113726 0 0 1 0 2 BBS1 chr11:66291195 3'AG 66291195 Downstream 69bp
chr11 66291263 66291263 1 + C G rs35209408 66291262 + 66291242 66291282 41 GAACCTCCTGGAGCAGCATTCCCGGGGCCTGCAGGCCGTCA GAACCTCCTGGAGCAGCATTCGCGGGGCCTGCAGGCCGTCA < 41bp 0.648199957048184 0.881589933683865 0.8947326 0.9265505 prediction 0.466779953271362 Functional Gain - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66291262 chr11:66291263 synonymous SNV . 0 22 hm5C_associated_SNPs_113726 0 0 1 0 2 BBS1 chr11:66291353 5'GT 66291353 Upstream 91bp
chr11 67183193 67183193 1 + C G rs35899279 67183192 + 67183172 67183212 41 GCCGCTGCATCCCGCCCGGTCCGAGTCCGCCCGCCACGCCC GCCGCTGCATCCCGCCCGGTCGGAGTCCGCCCGCCACGCCC < 41bp 0.611207651719525 0.844593680115544 0.15692255 0.9034809 prediction 0.466772056792038 Functional Gain - CARNS1 ENSG00000172508 UTR5 Human protein_coding chr11:67183192 chr11:67183193 . . 0 22 hm5C_associated_SNPs_113727 0 0 0 0 1 CARNS1 chr11:67183234 5'GT 67183234 Upstream 42bp
chr7 99818408 99818408 1 + C A UCEC 99818407 + 99818387 99818427 41 GCCCCTAGGCTCCAGCCGTCCCGCACCAGCCCCCAGGCACC GCCCCTAGGCTCCAGCCGTCCAGCACCAGCCCCCAGGCACC < 41bp 0.564280736548757 0.797666193607313 0.033552617 0.113349766 prediction 0.466770914117113 Functional Gain - PVRIG ENSG00000213413 CDS Human protein_coding chr7:99818407 chr7:99818408 nonsynonymous SNV 0.005 0 22 hm5C_associated_SNPs_113728 0 0 0 0 2 PVRIG chr7:99818383 3'AG 99818383 Downstream 26bp
chr7 99818408 99818408 1 + C A UCEC 99818407 + 99818387 99818427 41 GCCCCTAGGCTCCAGCCGTCCCGCACCAGCCCCCAGGCACC GCCCCTAGGCTCCAGCCGTCCAGCACCAGCCCCCAGGCACC < 41bp 0.564280736548757 0.797666193607313 0.033552617 0.113349766 prediction 0.466770914117113 Functional Gain - PVRIG ENSG00000213413 CDS Human protein_coding chr7:99818407 chr7:99818408 nonsynonymous SNV 0.005 0 22 hm5C_associated_SNPs_113728 0 0 0 0 2 PVRIG chr7:99818443 5'GT 99818443 Upstream 36bp
chr5 7709399 7709399 1 + C T COAD 7709398 + 7709378 7709418 41 GCCAAAATGAGGGCCTCGGTCCGCATGACCCGGTACTTGGA GCCAAAATGAGGGCCTCGGTCTGCATGACCCGGTACTTGGA < 41bp 0.577828688702702 0.811214023944294 0.39393 0.23514408 prediction 0.466770670483183 Functional Gain - ADCY2 ENSG00000078295 CDS Human protein_coding chr5:7709398 chr5:7709399 nonsynonymous SNV 0.965 4 22 hm5C_associated_SNPs_113729 0 0 0 0 1 ADCY2 chr5:7709324 3'AG 7709324 Downstream 76bp
chr17 28750024 28750024 1 + C T UCEC 28750023 + 28750003 28750043 41 TGATGGAGATATCTGATAATCCGGGTGTCCATGAACCAGGT TGATGGAGATATCTGATAATCTGGGTGTCCATGAACCAGGT < 41bp 0.503458299935533 0.736840737998869 0.87887716 0.7461221 prediction 0.466764876126671 Functional Gain - CPD ENSG00000108582 CDS Human protein_coding chr17:28750023 chr17:28750024 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_113730 0 0 1 0 1 CPD chr17:28750041 5'GT 28750041 Upstream 18bp
chr19 35500854 35500854 1 + C T UCEC 35500853 + 35500833 35500873 41 GAAACTGTTCAGCAAACTCCCCGAAGCAGAACGCCTCATTG GAAACTGTTCAGCAAACTCCCTGAAGCAGAACGCCTCATTG < 41bp 0.482704912628133 0.733381279623865 0.30080467 0.2826383 prediction 0.46676255924773 Functional Gain - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35500853 chr19:35500854 synonymous SNV . 0 22 hm5C_associated_SNPs_113731 0 0 1 0 2 GRAMD1A chr19:35500792 3'AG 35500792 Downstream 63bp
chr19 35500854 35500854 1 + C T UCEC 35500853 + 35500833 35500873 41 GAAACTGTTCAGCAAACTCCCCGAAGCAGAACGCCTCATTG GAAACTGTTCAGCAAACTCCCTGAAGCAGAACGCCTCATTG < 41bp 0.482704912628133 0.733381279623865 0.30080467 0.2826383 prediction 0.46676255924773 Functional Gain - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35500853 chr19:35500854 synonymous SNV . 0 22 hm5C_associated_SNPs_113731 0 0 1 0 2 GRAMD1A chr19:35500876 5'GT 35500876 Upstream 23bp
chr10 71692333 71692333 1 + C A LUAD 71692332 + 71692312 71692352 41 ACAGGGAGAGAAAGGAGAAGCCGGGGAGAAGGGCAATCCAG ACAGGGAGAGAAAGGAGAAGCAGGGGAGAAGGGCAATCCAG < 41bp 0.535644622285226 0.769025167393253 0.84962773 0.9021437 prediction 0.466761090216053 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71692332 chr10:71692333 synonymous SNV . 0 22 hm5C_associated_SNPs_113732 0 0 0 0 2 COL13A1 chr10:71692316 3'AG 71692316 Downstream 18bp
chr10 71692333 71692333 1 + C A LUAD 71692332 + 71692312 71692352 41 ACAGGGAGAGAAAGGAGAAGCCGGGGAGAAGGGCAATCCAG ACAGGGAGAGAAAGGAGAAGCAGGGGAGAAGGGCAATCCAG < 41bp 0.535644622285226 0.769025167393253 0.84962773 0.9021437 prediction 0.466761090216053 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71692332 chr10:71692333 synonymous SNV . 0 22 hm5C_associated_SNPs_113732 0 0 0 0 2 COL13A1 chr10:71692360 5'GT 71692360 Upstream 28bp
chr8 97274405 97274405 1 + T A UCEC 97274401 + 97274381 97274421 41 ACCGGCCGCATACCATCACCCTGCTCAGCTTCACCATCGTC ACCGGCCGCATACCATCACCCTGCACAGCTTCACCATCGTC < 41bp 0.392789347586862 0.733379047235547 0.003693074 0.003167063 prediction 0.466758094471094 Functional Gain - PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97274401 chr8:97274405 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_113733 0 0 1 0 1 PTDSS1 chr8:97274447 5'GT 97274447 Upstream 43bp
chr2 47250579 47250579 1 + C T rs144064667 47250578 + 47250558 47250598 41 TCCAAGCAAGATGAATTGCACCGGAAGGCACTGCAGACGCT TCCAAGCAAGATGAATTGCACTGGAAGGCACTGCAGACGCT < 41bp 0.549325377143597 0.782695988065905 0.18476757 0.25761795 prediction 0.466741221844617 Functional Gain - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47250578 chr2:47250579 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_113736 0 0 1 0 2 TTC7A chr2:47250547 3'AG 47250547 Downstream 33bp
chr2 47250579 47250579 1 + C T rs144064667 47250578 + 47250558 47250598 41 TCCAAGCAAGATGAATTGCACCGGAAGGCACTGCAGACGCT TCCAAGCAAGATGAATTGCACTGGAAGGCACTGCAGACGCT < 41bp 0.549325377143597 0.782695988065905 0.18476757 0.25761795 prediction 0.466741221844617 Functional Gain - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47250578 chr2:47250579 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_113736 0 0 1 0 2 TTC7A chr2:47250604 5'GT 47250604 Upstream 26bp
chr19 50361890 50361890 1 + C T COAD 50361889 + 50361869 50361909 41 GAGACACTGAAGAGCCTGTGCCGGATCATGGACAATGGCTT GAGACACTGAAGAGCCTGTGCTGGATCATGGACAATGGCTT < 41bp 0.541356130015775 0.774717751210201 0.44159544 0.13483807 prediction 0.466723242388851 Functional Gain - PTOV1 ENSG00000104960 CDS Human protein_coding chr19:50361889 chr19:50361890 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_113743 0 0 1 0 2 PTOV1 chr19:50361806 3'AG 50361806 Downstream 85bp
chr19 50361890 50361890 1 + C T COAD 50361889 + 50361869 50361909 41 GAGACACTGAAGAGCCTGTGCCGGATCATGGACAATGGCTT GAGACACTGAAGAGCCTGTGCTGGATCATGGACAATGGCTT < 41bp 0.541356130015775 0.774717751210201 0.44159544 0.13483807 prediction 0.466723242388851 Functional Gain - PTOV1 ENSG00000104960 CDS Human protein_coding chr19:50361889 chr19:50361890 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_113743 0 0 1 0 2 PTOV1 chr19:50361910 5'GT 50361910 Upstream 21bp
chr3 39178807 39178807 1 + C T STAD 39178806 + 39178786 39178826 41 CGGCTGCTGCAGGGCCTCTGCCGGCTGGCCACCAGGGAGAA CGGCTGCTGCAGGGCCTCTGCTGGCTGGCCACCAGGGAGAA < 41bp 0.480055989851448 0.733358496020431 0.76533383 0.34644192 prediction 0.466716992040862 Functional Gain - TTC21A ENSG00000168026 CDS Human protein_coding chr3:39178806 chr3:39178807 nonsynonymous SNV 0.943 2 22 hm5C_associated_SNPs_113744 0 0 0 0 1 TTC21A chr3:39178878 5'GT 39178878 Upstream 72bp
chr15 57976648 57976648 1 + C T UCEC 57976647 + 57976627 57976667 41 GATGCCTTCTAGGAACTACACCCCATACACAAGAGTCCTGG GATGCCTTCTAGGAACTACACTCCATACACAAGAGTCCTGG < 41bp 0.47668036156563 0.733355027572426 0.03939125 0.9351777 prediction 0.466710055144852 Functional Gain - MYZAP ENSG00000137878;ENSG00000263155 CDS Human other chr15:57976647 chr15:57976648 synonymous SNV . 0 22 hm5C_associated_SNPs_113745 0 0 0 0 1 MYZAP chr15:57976600 3'AG 57976600 Downstream 49bp
chr2 97465384 97465384 1 + C T rs41286594 97465383 + 97465363 97465403 41 GGCCCTGACCTCGGTCCCCTCCGGTGAGTTGTTGGGCATGG GGCCCTGACCTCGGTCCCCTCTGGTGAGTTGTTGGGCATGG < 41bp 0.500722950181199 0.734068764974621 0.4431156 0.41948006 prediction 0.466691629586844 Functional Gain - CNNM4 ENSG00000158158 CDS Human protein_coding chr2:97465383 chr2:97465384 synonymous SNV . 0 22 hm5C_associated_SNPs_113746 2 0 0 0 2 CNNM4 chr2:97465289 3'AG 97465289 Downstream 96bp
chr2 97465384 97465384 1 + C T rs41286594 97465383 + 97465363 97465403 41 GGCCCTGACCTCGGTCCCCTCCGGTGAGTTGTTGGGCATGG GGCCCTGACCTCGGTCCCCTCTGGTGAGTTGTTGGGCATGG < 41bp 0.500722950181199 0.734068764974621 0.4431156 0.41948006 prediction 0.466691629586844 Functional Gain - CNNM4 ENSG00000158158 CDS Human protein_coding chr2:97465383 chr2:97465384 synonymous SNV . 0 22 hm5C_associated_SNPs_113746 2 0 0 0 2 CNNM4 chr2:97465385 5'GT 97465385 Upstream 2bp
chr7 150771283 150771283 1 + C A LUAD 150771279 + 150771259 150771299 41 GGCAGGGGAAGCCCCGGGGCCAGCCCAACACGGCCCTGCTG GGCAGGGGAAGCCCCGGGGCCAGCACAACACGGCCCTGCTG < 41bp 0.309233538002198 0.733345795342926 0.48174044 0.46073392 prediction 0.466691590685852 Functional Gain - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150771279 chr7:150771283 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_113747 0 0 1 0 1 SLC4A2 chr7:150771380 5'GT 150771380 Upstream 98bp
chr10 15103830 15103830 1 + C T SKCM 15103829 + 15103809 15103849 41 TGTGCTCTGCAGCCAGTCATCCAGGATAAACCATTTGCATT TGTGCTCTGCAGCCAGTCATCTAGGATAAACCATTTGCATT < 41bp 0.520165686624593 0.753508286325499 0.8063762 0.36814064 prediction 0.466685199401812 Functional Gain - OLAH ENSG00000152463 CDS Human protein_coding chr10:15103829 chr10:15103830 stopgain 0.053 0 22 hm5C_associated_SNPs_113749 0 0 0 0 1 OLAH chr10:15103861 5'GT 15103861 Upstream 32bp
chr19 55508845 55508845 1 + C T LGG 55508844 + 55508824 55508864 41 ACATGTTCCAGTGGCACCCTCCGGACACTCAGGTATGATCC ACATGTTCCAGTGGCACCCTCTGGACACTCAGGTATGATCC < 41bp 0.541059661136147 0.774400352767979 0.3311186 0.21023017 prediction 0.466681383263665 Functional Gain - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55508844 chr19:55508845 nonsynonymous SNV 0.005 2 22 hm5C_associated_SNPs_113751 0 0 0 0 1 NLRP2 chr19:55508855 5'GT 55508855 Upstream 11bp
chr7 29915483 29915483 1 + C A HNSC 29915482 + 29915462 29915502 41 CCAGCTTGCGAAGGGCAGATCCGAAAGGCCGGAGTGCGCTG CCAGCTTGCGAAGGGCAGATCAGAAAGGCCGGAGTGCGCTG < 41bp 0.58384898403785 0.817185347613369 0.16889876 0.388668 prediction 0.466672727151038 Functional Gain - WIPF3 ENSG00000122574 CDS Human protein_coding chr7:29915482 chr7:29915483 nonsynonymous SNV 0.109 0 22 hm5C_associated_SNPs_113753 0 0 0 0 1 WIPF3 chr7:29915446 3'AG 29915446 Downstream 38bp
chr6 142689014 142689014 1 + C A LUAD 142689013 + 142688993 142689033 41 TTTTCAAGTGACTTTAGCATCCAGAAGAAAGGTTTCAATGC TTTTCAAGTGACTTTAGCATCAAGAAGAAAGGTTTCAATGC < 41bp 0.523555699321795 0.756889482724824 0.32181376 0.48830795 prediction 0.466667566806058 Functional Gain - ADGRG6 ENSG00000112414 CDS Human protein_coding chr6:142689013 chr6:142689014 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_113756 0 0 1 0 1 ADGRG6 chr6:142689047 5'GT 142689047 Upstream 34bp
chr12 7293961 7293961 1 + C T STAD 7293960 + 7293940 7293980 41 AATGGCCTCATCCACCCACCCCGAAGGGAGCCTGCTCTCAT AATGGCCTCATCCACCCACCCTGAAGGGAGCCTGCTCTCAT < 41bp 0.460843850654931 0.733331724673994 0.30894434 0.19755122 prediction 0.466663449347988 Functional Gain - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7293960 chr12:7293961 stopgain 0.907 1 22 hm5C_associated_SNPs_113758 0 0 1 0 1 CLSTN3 chr12:7294000 5'GT 7294000 Upstream 40bp
chr20 39750787 39750787 1 + A G SKCM 39750784 + 39750764 39750804 41 AATTATCTGGACCCTAGGATCACAGTGGCTTGGTAAGTGTT AATTATCTGGACCCTAGGATCACGGTGGCTTGGTAAGTGTT < 41bp 0.501941877913065 0.735272872750284 0.94050336 0.95447016 prediction 0.466661989674437 Functional Gain - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39750784 chr20:39750787 synonymous SNV . 0 24 hm5C_associated_SNPs_113759 0 0 1 0 1 TOP1 chr20:39750795 5'GT 39750795 Upstream 9bp
chrX 129173184 129173184 1 + C T SKCM 129173183 + 129173163 129173203 41 GCTGTCCTATGGGGCCGATCCCACACTGGCTACCTACTCGG GCTGTCCTATGGGGCCGATCCTACACTGGCTACCTACTCGG < 41bp 0.462969176934281 0.733328219647903 0.3882529 0.93975776 prediction 0.466656439295805 Functional Gain - BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129173183 chrX:129173184 synonymous SNV . 0 22 hm5C_associated_SNPs_113760 0 0 1 0 2 BCORL1 chrX:129173112 3'AG 129173112 Downstream 73bp
chrX 129173184 129173184 1 + C T SKCM 129173183 + 129173163 129173203 41 GCTGTCCTATGGGGCCGATCCCACACTGGCTACCTACTCGG GCTGTCCTATGGGGCCGATCCTACACTGGCTACCTACTCGG < 41bp 0.462969176934281 0.733328219647903 0.3882529 0.93975776 prediction 0.466656439295805 Functional Gain - BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129173183 chrX:129173184 synonymous SNV . 0 22 hm5C_associated_SNPs_113760 0 0 1 0 2 BCORL1 chrX:129173257 5'GT 129173257 Upstream 74bp
chr19 35769969 35769969 1 + A G UCEC 35769966 + 35769946 35769986 41 TGCAGATGGACAACGAGCTCCTGAGGCAGCAGGTGGGTGCG TGCAGATGGACAACGAGCTCCTGGGGCAGCAGGTGGGTGCG < 41bp 0.516947584232908 0.750270530558369 0.7967194 0.89220405 prediction 0.466645892650922 Functional Gain - USF2 ENSG00000105698 CDS Human protein_coding chr19:35769966 chr19:35769969 nonsynonymous SNV 0.982 5 24 hm5C_associated_SNPs_113763 0 0 1 0 2 USF2 chr19:35769873 3'AG 35769873 Downstream 97bp
chr19 35769969 35769969 1 + A G UCEC 35769966 + 35769946 35769986 41 TGCAGATGGACAACGAGCTCCTGAGGCAGCAGGTGGGTGCG TGCAGATGGACAACGAGCTCCTGGGGCAGCAGGTGGGTGCG < 41bp 0.516947584232908 0.750270530558369 0.7967194 0.89220405 prediction 0.466645892650922 Functional Gain - USF2 ENSG00000105698 CDS Human protein_coding chr19:35769966 chr19:35769969 nonsynonymous SNV 0.982 5 24 hm5C_associated_SNPs_113763 0 0 1 0 2 USF2 chr19:35769977 5'GT 35769977 Upstream 9bp
chr11 62502996 62502996 1 + C T SKCM 62502995 + 62502975 62503015 41 TCTGCAGGACTATGACCAGGCCCGCCACTACCTCCTGGCTG TCTGCAGGACTATGACCAGGCTCGCCACTACCTCCTGGCTG < 41bp 0.485506533286394 0.733309165067531 0.07004833 0.07990271 prediction 0.466618330135062 Functional Gain - TTC9C ENSG00000162222 CDS Human protein_coding chr11:62502995 chr11:62502996 synonymous SNV . 0 22 hm5C_associated_SNPs_113769 0 0 1 0 1 TTC9C chr11:62503036 5'GT 62503036 Upstream 41bp
chr3 110831177 110831177 1 + C T SARC 110831176 + 110831156 110831196 41 TCTGCAAAGCTGTTACATTCCCGCTTGGAAATGCCCAGTCC TCTGCAAAGCTGTTACATTCCTGCTTGGAAATGCCCAGTCC < 41bp 0.548088556413077 0.781376412755699 0.03609374 0.039952517 prediction 0.466575712685244 Functional Gain - NECTIN3 ENSG00000177707 CDS Human protein_coding chr3:110831176 chr3:110831177 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_113774 0 0 1 0 1 NECTIN3 chr3:110831218 5'GT 110831218 Upstream 42bp
chr2 192255112 192255112 1 + C T UCEC 192255111 + 192255091 192255131 41 CTGGGGCTTTTGGAGAACGTCCGAGTGCGGAGGGCAGGCTA CTGGGGCTTTTGGAGAACGTCTGAGTGCGGAGGGCAGGCTA < 41bp 0.48401955687555 0.733285395048363 0.1174584 0.119186014 prediction 0.466570790096726 Functional Gain - MYO1B ENSG00000128641 CDS Human protein_coding chr2:192255111 chr2:192255112 stopgain 0.973 1 22 hm5C_associated_SNPs_113775 0 0 1 0 1 MYO1B chr2:192255018 3'AG 192255018 Downstream 95bp
chr19 34297838 34297838 1 + C T BLCA 34297837 + 34297817 34297857 41 AAGCAACATTATTTCATTGACCGGGATGGGGAGATTTTCCG AAGCAACATTATTTCATTGACTGGGATGGGGAGATTTTCCG < 41bp 0.547614581796088 0.780893635046881 0.41284552 0.36729822 prediction 0.466558106501586 Functional Gain - KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34297837 chr19:34297838 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_113777 0 0 1 0 2 KCTD15 chr19:34297768 3'AG 34297768 Downstream 71bp
chr19 34297838 34297838 1 + C T BLCA 34297837 + 34297817 34297857 41 AAGCAACATTATTTCATTGACCGGGATGGGGAGATTTTCCG AAGCAACATTATTTCATTGACTGGGATGGGGAGATTTTCCG < 41bp 0.547614581796088 0.780893635046881 0.41284552 0.36729822 prediction 0.466558106501586 Functional Gain - KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34297837 chr19:34297838 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_113777 0 0 1 0 2 KCTD15 chr19:34297912 5'GT 34297912 Upstream 75bp
chr3 135974781 135974781 1 + A G ESCA 135974778 + 135974758 135974798 41 AGCGACATGTTTGTGGAACACAGATGTGCAGATTTTGGAAT AGCGACATGTTTGTGGAACACAGGTGTGCAGATTTTGGAAT < 41bp 0.506748375843632 0.740024938596495 0.3888139 0.6003063 prediction 0.466553125505725 Functional Gain - PCCB ENSG00000114054 CDS Human protein_coding chr3:135974778 chr3:135974781 synonymous SNV . 0 24 hm5C_associated_SNPs_113779 0 0 1 0 2 PCCB chr3:135974698 3'AG 135974698 Downstream 84bp
chr3 135974781 135974781 1 + A G ESCA 135974778 + 135974758 135974798 41 AGCGACATGTTTGTGGAACACAGATGTGCAGATTTTGGAAT AGCGACATGTTTGTGGAACACAGGTGTGCAGATTTTGGAAT < 41bp 0.506748375843632 0.740024938596495 0.3888139 0.6003063 prediction 0.466553125505725 Functional Gain - PCCB ENSG00000114054 CDS Human protein_coding chr3:135974778 chr3:135974781 synonymous SNV . 0 24 hm5C_associated_SNPs_113779 0 0 1 0 2 PCCB chr3:135974817 5'GT 135974817 Upstream 37bp
chr12 4791444 4791444 1 + C T SKCM 4791443 + 4791423 4791463 41 CACAGATTGTTCCTCCCATTCCCCTTGCCGCTTTTTGCCTA CACAGATTGTTCCTCCCATTCTCCTTGCCGCTTTTTGCCTA < 41bp 0.453926446190418 0.733274606501639 0.01861599 0.051209778 prediction 0.466549213003278 Functional Gain - NDUFA9 ENSG00000139180;ENSG00000255639 CDS Human other chr12:4791443 chr12:4791444 nonsynonymous SNV 0.192 1 22 hm5C_associated_SNPs_113780 0 0 1 0 2 NDUFA9 chr12:4791371 3'AG 4791371 Downstream 74bp
chr12 4791444 4791444 1 + C T SKCM 4791443 + 4791423 4791463 41 CACAGATTGTTCCTCCCATTCCCCTTGCCGCTTTTTGCCTA CACAGATTGTTCCTCCCATTCTCCTTGCCGCTTTTTGCCTA < 41bp 0.453926446190418 0.733274606501639 0.01861599 0.051209778 prediction 0.466549213003278 Functional Gain - NDUFA9 ENSG00000139180;ENSG00000255639 CDS Human other chr12:4791443 chr12:4791444 nonsynonymous SNV 0.192 1 22 hm5C_associated_SNPs_113780 0 0 1 0 2 NDUFA9 chr12:4791466 5'GT 4791466 Upstream 23bp
chr11 128638163 128638163 1 + C T COAD 128638162 + 128638142 128638182 41 CGAGAGGAGAGTCATCGTCCCCGCAGGTAATTCGAGAACCA CGAGAGGAGAGTCATCGTCCCTGCAGGTAATTCGAGAACCA < 41bp 0.555078560484142 0.78835233929284 0.1579226 0.15561515 prediction 0.466547557617398 Functional Gain - FLI1 ENSG00000151702 CDS Human protein_coding chr11:128638162 chr11:128638163 synonymous SNV . 0 22 hm5C_associated_SNPs_113781 0 0 0 0 1 FLI1 chr11:128638167 5'GT 128638167 Upstream 5bp
chr16 89999963 89999963 1 + T C OV 89999961 + 89999941 89999981 41 TCAGGGGCCTTTGGACATCTCTTCAGGCCTGACAATTTCAT TCAGGGGCCTTTGGACATCTCTCCAGGCCTGACAATTTCAT < 41bp 0.437169546540079 0.733269357976371 0.15723112 0.9460292 prediction 0.466538715952743 Functional Gain - TUBB3 ENSG00000198211;ENSG00000258947 CDS Human other chr16:89999961 chr16:89999963 nonsynonymous SNV 0.928 4 23 hm5C_associated_SNPs_113784 0 0 1 0 2 TUBB3 chr16:89999876 3'AG 89999876 Downstream 88bp
chr16 89999963 89999963 1 + T C OV 89999961 + 89999941 89999981 41 TCAGGGGCCTTTGGACATCTCTTCAGGCCTGACAATTTCAT TCAGGGGCCTTTGGACATCTCTCCAGGCCTGACAATTTCAT < 41bp 0.437169546540079 0.733269357976371 0.15723112 0.9460292 prediction 0.466538715952743 Functional Gain - TUBB3 ENSG00000198211;ENSG00000258947 CDS Human other chr16:89999961 chr16:89999963 nonsynonymous SNV 0.928 4 23 hm5C_associated_SNPs_113784 0 0 1 0 2 TUBB3 chr16:89999986 5'GT 89999986 Upstream 24bp
chr1 11579431 11579431 1 + C T STAD 11579430 + 11579410 11579450 41 AGCTGCCACCAGAATTGCAGCCGGAAGACCTCCCTGCACTT AGCTGCCACCAGAATTGCAGCTGGAAGACCTCCCTGCACTT < 41bp 0.525783454644223 0.759048813705308 0.9243874 0.9042478 prediction 0.46653071812217 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11579430 chr1:11579431 nonsynonymous SNV 0.470 3 22 hm5C_associated_SNPs_113786 0 0 0 0 1 DISP3 chr1:11579412 3'AG 11579412 Downstream 20bp
chr6 33373995 33373995 1 + C G COAD 33373991 + 33373971 33374011 41 AGGTGGACGCCCTGCTTCATCTGGCCCGCCAGAATCGGGCT AGGTGGACGCCCTGCTTCATCTGGGCCGCCAGAATCGGGCT < 41bp 0.633312516089186 0.866575707145711 0.1768071 0.44112968 prediction 0.466526382113049 Functional Gain - KIFC1 ENSG00000237649 CDS Human protein_coding chr6:33373991 chr6:33373995 nonsynonymous SNV 0.003 4 25 hm5C_associated_SNPs_113788 0 0 1 0 1 KIFC1 chr6:33373973 3'AG 33373973 Downstream 23bp
chr9 140100317 140100317 1 + C G rs113809617 140100313 + 140100293 140100333 41 GAGAGACTGGGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTG GAGAGACTGGGTCGCGAGGCCCGGGGCCGGCGGCTTGGCTG < 41bp 0.613565829018884 0.846827069489436 0.92363256 0.93629885 prediction 0.466522480941104 Functional Gain - NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100313 chr9:140100317 nonsynonymous SNV 0.977 1 25 hm5C_associated_SNPs_113790 0 1 0 0 1 NDOR1 chr9:140100364 5'GT 140100364 Upstream 48bp
chr3 23244879 23244879 1 + C G rs549843777 23244875 + 23244855 23244895 41 GTCCCTGGGGCCTCCCCAGTCTCCCTCCCCCTCGCGCCTGG GTCCCTGGGGCCTCCCCAGTCTCCGTCCCCCTCGCGCCTGG < 41bp 0.553773797530334 0.787029551578406 0.29993188 0.47382194 prediction 0.466511508096144 Functional Gain - UBE2E2 ENSG00000182247 UTR5 Human protein_coding chr3:23244875 chr3:23244879 . . 0 25 hm5C_associated_SNPs_113793 0 0 0 0 1 UBE2E2 chr3:23244955 5'GT 23244955 Upstream 77bp
chr6 117890850 117890850 1 + C T UCS 117890849 + 117890829 117890869 41 CCGCATCTATCAGCAGGTTGCCCCGGATGGATCTCAGAGAT CCGCATCTATCAGCAGGTTGCTCCGGATGGATCTCAGAGAT < 41bp 0.493286407062085 0.733233049672997 0.117799014 0.2612095 prediction 0.466466099345994 Functional Gain - GOPC ENSG00000047932 CDS Human other chr6:117890849 chr6:117890850 nonsynonymous SNV 0.615 3 22 hm5C_associated_SNPs_113801 0 0 0 0 1 DCBLD1;GOPC chr6:117890783 3'AG 117890783 Downstream 68bp
chr6 43412593 43412593 1 + C T SKCM 43412592 + 43412572 43412612 41 GCTGAAGGCTGAGAATAGCTCCCAGGAGGCGCAACCCTCCA GCTGAAGGCTGAGAATAGCTCTCAGGAGGCGCAACCCTCCA < 41bp 0.477014141865253 0.7332300326401 0.117069215 0.07696307 prediction 0.4664600652802 Functional Gain - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43412592 chr6:43412593 synonymous SNV . 0 22 hm5C_associated_SNPs_113802 0 0 0 0 2 ABCC10 chr6:43412526 3'AG 43412526 Downstream 68bp
chr6 43412593 43412593 1 + C T SKCM 43412592 + 43412572 43412612 41 GCTGAAGGCTGAGAATAGCTCCCAGGAGGCGCAACCCTCCA GCTGAAGGCTGAGAATAGCTCTCAGGAGGCGCAACCCTCCA < 41bp 0.477014141865253 0.7332300326401 0.117069215 0.07696307 prediction 0.4664600652802 Functional Gain - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43412592 chr6:43412593 synonymous SNV . 0 22 hm5C_associated_SNPs_113802 0 0 0 0 2 ABCC10 chr6:43412676 5'GT 43412676 Upstream 84bp
chr5 619187 619187 1 + T A UCEC 619183 + 619163 619203 41 ACATTCTCTGATGAGTTTAACAGGTCTGAAATCTTTGGATC ACATTCTCTGATGAGTTTAACAGGACTGAAATCTTTGGATC < 41bp 0.637852760660916 0.871062615024028 0.8985482 0.90374744 prediction 0.466419708726224 Functional Gain - CEP72 ENSG00000112877 CDS Human protein_coding chr5:619183 chr5:619187 synonymous SNV . 0 25 hm5C_associated_SNPs_113806 0 0 1 0 2 CEP72 chr5:619105 3'AG 619105 Downstream 83bp
chr5 619187 619187 1 + T A UCEC 619183 + 619163 619203 41 ACATTCTCTGATGAGTTTAACAGGTCTGAAATCTTTGGATC ACATTCTCTGATGAGTTTAACAGGACTGAAATCTTTGGATC < 41bp 0.637852760660916 0.871062615024028 0.8985482 0.90374744 prediction 0.466419708726224 Functional Gain - CEP72 ENSG00000112877 CDS Human protein_coding chr5:619183 chr5:619187 synonymous SNV . 0 25 hm5C_associated_SNPs_113806 0 0 1 0 2 CEP72 chr5:619232 5'GT 619232 Upstream 46bp
chr9 130570896 130570896 1 + C T COAD 130570895 + 130570875 130570915 41 GGAAGGGGGGCCGCCGCTGACCCTGGGCCTGGAGGGGGAGC GGAAGGGGGGCCGCCGCTGACTCTGGGCCTGGAGGGGGAGC < 41bp 0.553847586872564 0.787052445362757 0.32549343 0.3784093 prediction 0.466409716980385 Functional Gain - FPGS ENSG00000136877 CDS Human protein_coding chr9:130570895 chr9:130570896 synonymous SNV . 0 22 hm5C_associated_SNPs_113808 0 0 1 0 1 FPGS chr9:130570984 5'GT 130570984 Upstream 89bp
chr3 52812491 52812491 1 + C T SKCM 52812490 + 52812470 52812510 41 GTGGCCTTCGACCTGGAAATCCCCAAGACAGCATTCATCAG GTGGCCTTCGACCTGGAAATCTCCAAGACAGCATTCATCAG < 41bp 0.590718374998026 0.823922598902814 0.22182775 0.97088265 prediction 0.466408447809574 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52812490 chr3:52812491 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_113809 0 0 0 1 1 ITIH1 chr3:52812522 5'GT 52812522 Upstream 32bp
chr20 61957496 61957496 1 + C T SKCM 61957495 + 61957475 61957515 41 GGCCTGCCTGGACCCCCTGGCCCCAGGGTAGGCACCGACCT GGCCTGCCTGGACCCCCTGGCTCCAGGGTAGGCACCGACCT < 41bp 0.468935416219989 0.733196957752198 0.086036354 0.5658065 prediction 0.466393915504395 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61957495 chr20:61957496 nonsynonymous SNV 0.243 4 22 hm5C_associated_SNPs_113810 0 0 0 0 1 COL20A1 chr20:61957448 3'AG 61957448 Downstream 49bp
chr15 101098995 101098995 1 + C A LUAD 101098994 + 101098974 101099014 41 CCGCCCGAACGTCCCAGTGCCCACGGTGGCCAGTGTGTCGA CCGCCCGAACGTCCCAGTGCCAACGGTGGCCAGTGTGTCGA < 41bp 0.505811912708846 0.739002913128602 0.15021941 0.3840949 prediction 0.466382000839511 Functional Gain - LOC102723335;PRKXP1 ENSG00000259205;ENSG00000259540 ncRNA_exonic Human other chr15:101098994 chr15:101098995 . . 0 22 hm5C_associated_SNPs_113814 0 0 0 0 1 LOC102723335;PRKXP1 chr15:101099027 5'GT 101099027 Upstream 33bp
chr21 41137499 41137499 1 + A G rs12626544 41137496 + 41137476 41137516 41 AATGAAGTCATAGAAGGCCCCCAAAATGCAAGAGTCCTGAA AATGAAGTCATAGAAGGCCCCCAGAATGCAAGAGTCCTGAA < 41bp 0.506876545128321 0.740062328514367 0.10454354 0.033610225 prediction 0.466371566772093 Functional Gain - IGSF5 ENSG00000183067 CDS Human protein_coding chr21:41137496 chr21:41137499 synonymous SNV . 0 24 hm5C_associated_SNPs_113816 0 0 0 0 1 IGSF5 chr21:41137462 3'AG 41137462 Downstream 38bp
chr16 14970346 14970346 1 + A G UCEC 14970343 + 14970323 14970363 41 GGGGCAAGTTCACCGCTGATCACAGTCTTTACTGATGACAA GGGGCAAGTTCACCGCTGATCACGGTCTTTACTGATGACAA < 41bp 0.488562038101165 0.7331788450392 0.38449997 0.72846687 prediction 0.4663576900784 Functional Gain - NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14970343 chr16:14970346 synonymous SNV . 0 24 hm5C_associated_SNPs_113819 0 0 0 0 1 NOMO1 chr16:14970375 5'GT 14970375 Upstream 30bp
chr11 119059486 119059486 1 + C A LUSC 119059485 + 119059465 119059505 41 GCCTTCTGTCCCTCTTGGCTCCCGACAGTGCTTCCTGTACC GCCTTCTGTCCCTCTTGGCTCACGACAGTGCTTCCTGTACC < 41bp 0.569357833110917 0.802534516777569 0.04583016 0.11624959 prediction 0.466353367333303 Functional Gain - PDZD3 ENSG00000172367 CDS Human protein_coding chr11:119059485 chr11:119059486 synonymous SNV . 0 22 hm5C_associated_SNPs_113823 0 0 0 0 1 PDZD3 chr11:119059576 5'GT 119059576 Upstream 91bp
chr2 202343226 202343226 1 + A G HNSC 202343223 + 202343203 202343243 41 CTTGTCTCCAGTGGAACTCACACAGTAAATAGTGACCGATT CTTGTCTCCAGTGGAACTCACACGGTAAATAGTGACCGATT < 41bp 0.499360406448306 0.733176227482023 0.33693078 0.37527794 prediction 0.466352454964047 Functional Gain - STRADB ENSG00000082146 CDS Human protein_coding chr2:202343223 chr2:202343226 synonymous SNV . 0 24 hm5C_associated_SNPs_113824 0 0 0 0 1 STRADB chr2:202343324 5'GT 202343324 Upstream 99bp
chr2 71206870 71206870 1 + C T THYM 71206869 + 71206849 71206889 41 TGGTAGAGGAGTACAAGTTTCCCGTGGACCTGCTGACCAAC TGGTAGAGGAGTACAAGTTTCTCGTGGACCTGCTGACCAAC < 41bp 0.47585386845921 0.733171907650416 0.35089636 0.30808404 prediction 0.466343815300832 Functional Gain - ANKRD53 ENSG00000144031 CDS Human protein_coding chr2:71206869 chr2:71206870 nonsynonymous SNV 0.983 2 22 hm5C_associated_SNPs_113826 0 0 0 0 1 ANKRD53 chr2:71206791 3'AG 71206791 Downstream 80bp
chr3 183474360 183474360 1 + C T SKCM 183474359 + 183474339 183474379 41 CCATCACCATTGCCTCGAACCCCGACTTCCACTCCAGTCCA CCATCACCATTGCCTCGAACCTCGACTTCCACTCCAGTCCA < 41bp 0.585204276461698 0.8183741340418 0.089741796 0.7739625 prediction 0.466339715160205 Functional Gain - YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183474359 chr3:183474360 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_113827 0 0 1 0 1 YEATS2 chr3:183474316 3'AG 183474316 Downstream 45bp
chr17 40934919 40934919 1 + C T STAD 40934918 + 40934898 40934938 41 GGTTTGCATCGTGCTGGTCACCGAACTCATGACCTCGGGCA GGTTTGCATCGTGCTGGTCACTGAACTCATGACCTCGGGCA < 41bp 0.542441505661497 0.775611014032513 0.3117085 0.2760427 prediction 0.466339016742033 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40934918 chr17:40934919 synonymous SNV . 0 22 hm5C_associated_SNPs_113828 0 0 1 0 1 WNK4 chr17:40934948 5'GT 40934948 Upstream 30bp
chr5 178369707 178369707 1 + C A rs569224561 178369703 + 178369683 178369723 41 TAGCAGGTGTGTGGACCCTTCTAGCCTGAGGAGTCCTGCAG TAGCAGGTGTGTGGACCCTTCTAGACTGAGGAGTCCTGCAG < 41bp 0.426771918224038 0.733163402289366 0.35325825 0.46090826 prediction 0.466326804578732 Functional Gain - ZNF454 ENSG00000178187 UTR5 Human protein_coding chr5:178369703 chr5:178369707 . . 0 25 hm5C_associated_SNPs_113829 0 0 0 0 2 ZNF454 chr5:178369686 3'AG 178369686 Downstream 22bp
chr5 178369707 178369707 1 + C A rs569224561 178369703 + 178369683 178369723 41 TAGCAGGTGTGTGGACCCTTCTAGCCTGAGGAGTCCTGCAG TAGCAGGTGTGTGGACCCTTCTAGACTGAGGAGTCCTGCAG < 41bp 0.426771918224038 0.733163402289366 0.35325825 0.46090826 prediction 0.466326804578732 Functional Gain - ZNF454 ENSG00000178187 UTR5 Human protein_coding chr5:178369703 chr5:178369707 . . 0 25 hm5C_associated_SNPs_113829 0 0 0 0 2 ZNF454 chr5:178369689 3'AG 178369689 Downstream 19bp
chr3 38155849 38155849 1 + C T COAD 38155848 + 38155828 38155868 41 TGCAGGTGGGAGACCTGCTGCCGGAAGTCATCCCAGTGCAC TGCAGGTGGGAGACCTGCTGCTGGAAGTCATCCCAGTGCAC < 41bp 0.518221725904649 0.751380533852934 0.85015905 0.2868694 prediction 0.46631761589657 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38155848 chr3:38155849 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_113831 0 0 0 0 1 DLEC1 chr3:38155833 3'AG 38155833 Downstream 17bp
chr16 81348861 81348861 1 + T C COAD 81348859 + 81348839 81348879 41 ATCCCGGTGCAGAAGAACATCCTGGCGGCGGCCAGCCCGTA ATCCCGGTGCAGAAGAACATCCCGGCGGCGGCCAGCCCGTA < 41bp 0.526053757589138 0.759209036343351 0.3339677 0.45367858 prediction 0.466310557508426 Functional Gain - GAN ENSG00000261609 CDS Human protein_coding chr16:81348859 chr16:81348861 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_113833 0 0 1 0 1 GAN chr16:81348885 5'GT 81348885 Upstream 25bp
chr1 158151918 158151918 1 + T C UCEC 158151916 + 158151896 158151936 41 GCATTTCAAGGAAAAGATATCCTGAGTTTCCAAGGAACTTC GCATTTCAAGGAAAAGATATCCCGAGTTTCCAAGGAACTTC < 41bp 0.460098644261534 0.733155242059972 0.21274951 0.13850525 prediction 0.466310484119944 Functional Gain - CD1D ENSG00000158473 CDS Human protein_coding chr1:158151916 chr1:158151918 nonsynonymous SNV 0.203 3 23 hm5C_associated_SNPs_113834 0 0 0 0 1 CD1D chr1:158151822 3'AG 158151822 Downstream 97bp
chr1 158813815 158813815 1 + C A LUAD 158813814 + 158813794 158813834 41 TGTCCCAAGAGCAGAGTAAGCCCCCAGGTCCCTCAGGAGCC TGTCCCAAGAGCAGAGTAAGCACCCAGGTCCCTCAGGAGCC < 41bp 0.544995748478062 0.77813917546875 0.17794362 0.15023053 prediction 0.466286853981376 Functional Gain - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813814 chr1:158813815 nonsynonymous SNV 0.002 2 22 hm5C_associated_SNPs_113840 0 0 0 0 2 MNDA chr1:158813745 3'AG 158813745 Downstream 71bp
chr1 158813815 158813815 1 + C A LUAD 158813814 + 158813794 158813834 41 TGTCCCAAGAGCAGAGTAAGCCCCCAGGTCCCTCAGGAGCC TGTCCCAAGAGCAGAGTAAGCACCCAGGTCCCTCAGGAGCC < 41bp 0.544995748478062 0.77813917546875 0.17794362 0.15023053 prediction 0.466286853981376 Functional Gain - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813814 chr1:158813815 nonsynonymous SNV 0.002 2 22 hm5C_associated_SNPs_113840 0 0 0 0 2 MNDA chr1:158813912 5'GT 158813912 Upstream 98bp
chrX 10180635 10180635 1 + C T UCEC 10180634 + 10180614 10180654 41 CTTCAGGAACTGGTGCAGACCCGGTGCAGACTGTGTCACGC CTTCAGGAACTGGTGCAGACCTGGTGCAGACTGTGTCACGC < 41bp 0.543765823455254 0.776907078401401 0.78968394 0.2922144 prediction 0.466282509892294 Functional Gain - CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10180634 chrX:10180635 synonymous SNV . 0 22 hm5C_associated_SNPs_113841 0 0 0 0 1 CLCN4 chrX:10180693 5'GT 10180693 Upstream 59bp
chr10 5415736 5415736 1 + C A LUSC 5415735 + 5415715 5415755 41 TGCTGCTGCTCCTGGGGGGCCCCAGGACAGGCCTCCCCCAC TGCTGCTGCTCCTGGGGGGCCACAGGACAGGCCTCCCCCAC < 41bp 0.562263552881782 0.795399679315456 0.82730913 0.8772367 prediction 0.466272252867348 Functional Gain - UCN3 ENSG00000178473 CDS Human protein_coding chr10:5415735 chr10:5415736 nonsynonymous SNV 0.013 3 22 hm5C_associated_SNPs_113843 0 0 0 0 1 UCN3 chr10:5415678 3'AG 5415678 Downstream 59bp
chr1 907488 907488 1 + C A UCEC 907484 + 907464 907504 41 CCACTCCGTGCCGTCCACATCAACCTGGAGGAGAAGGAGAA CCACTCCGTGCCGTCCACATCAACATGGAGGAGAAGGAGAA < 41bp 0.31203490861483 0.733133721076849 0.13859335 0.1583286 prediction 0.466267442153698 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:907484 chr1:907488 nonsynonymous SNV 0.024 2 25 hm5C_associated_SNPs_113844 0 0 0 0 2 PLEKHN1 chr1:907455 3'AG 907455 Downstream 34bp
chr1 907488 907488 1 + C A UCEC 907484 + 907464 907504 41 CCACTCCGTGCCGTCCACATCAACCTGGAGGAGAAGGAGAA CCACTCCGTGCCGTCCACATCAACATGGAGGAGAAGGAGAA < 41bp 0.31203490861483 0.733133721076849 0.13859335 0.1583286 prediction 0.466267442153698 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:907484 chr1:907488 nonsynonymous SNV 0.024 2 25 hm5C_associated_SNPs_113844 0 0 0 0 2 PLEKHN1 chr1:907530 5'GT 907530 Upstream 43bp
chr2 220147591 220147591 1 + C T STAD 220147590 + 220147570 220147610 41 CCCTTCTCAGAGCTTCAGAACCGGGGTTCCCGACACTCAGG CCCTTCTCAGAGCTTCAGAACTGGGGTTCCCGACACTCAGG < 41bp 0.536072755607226 0.769202217918179 0.95595604 0.89228165 prediction 0.466258924621906 Functional Gain - DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220147590 chr2:220147591 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_113845 0 0 0 0 2 DNAJB2 chr2:220147559 3'AG 220147559 Downstream 33bp
chr2 220147591 220147591 1 + C T STAD 220147590 + 220147570 220147610 41 CCCTTCTCAGAGCTTCAGAACCGGGGTTCCCGACACTCAGG CCCTTCTCAGAGCTTCAGAACTGGGGTTCCCGACACTCAGG < 41bp 0.536072755607226 0.769202217918179 0.95595604 0.89228165 prediction 0.466258924621906 Functional Gain - DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220147590 chr2:220147591 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_113845 0 0 0 0 2 DNAJB2 chr2:220147651 5'GT 220147651 Upstream 61bp
chr17 40936445 40936445 1 + C T SKCM 40936444 + 40936424 40936464 41 GCTGTGGACCCTACAGGGACCCCGGAATTCATGGCCCCCGA GCTGTGGACCCTACAGGGACCTCGGAATTCATGGCCCCCGA < 41bp 0.493101929939716 0.733119517755656 0.3834886 0.8644893 prediction 0.466239035511311 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40936444 chr17:40936445 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_113848 0 0 1 0 1 WNK4 chr17:40936440 3'AG 40936440 Downstream 6bp
chr22 37325453 37325453 1 + C A UCEC 37325452 + 37325432 37325472 41 CCTCCCCTCCAGTCCAGCCTCCTGAGCCCAGGGACCTGCAG CCTCCCCTCCAGTCCAGCCTCATGAGCCCAGGGACCTGCAG < 41bp 0.461074157701467 0.7331121379963 0.18905613 0.18596944 prediction 0.4662242759926 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37325452 chr22:37325453 nonsynonymous SNV 0.004 2 22 hm5C_associated_SNPs_113851 0 0 0 0 1 CSF2RB chr22:37325444 3'AG 37325444 Downstream 10bp
chr1 36056305 36056305 1 + C T UCEC 36056304 + 36056284 36056324 41 GTTCCCAGCCAAGGCAGCTGCCGAGTACCTGTGCCGACAGC GTTCCCAGCCAAGGCAGCTGCTGAGTACCTGTGCCGACAGC < 41bp 0.51667371577463 0.749775746512058 0.39522618 0.37100595 prediction 0.466204061474857 Functional Gain - TFAP2E ENSG00000116819 CDS Human protein_coding chr1:36056304 chr1:36056305 synonymous SNV . 0 22 hm5C_associated_SNPs_113853 0 0 0 0 2 TFAP2E chr1:36056235 3'AG 36056235 Downstream 71bp
chr1 36056305 36056305 1 + C T UCEC 36056304 + 36056284 36056324 41 GTTCCCAGCCAAGGCAGCTGCCGAGTACCTGTGCCGACAGC GTTCCCAGCCAAGGCAGCTGCTGAGTACCTGTGCCGACAGC < 41bp 0.51667371577463 0.749775746512058 0.39522618 0.37100595 prediction 0.466204061474857 Functional Gain - TFAP2E ENSG00000116819 CDS Human protein_coding chr1:36056304 chr1:36056305 synonymous SNV . 0 22 hm5C_associated_SNPs_113853 0 0 0 0 2 TFAP2E chr1:36056376 5'GT 36056376 Upstream 72bp
chr5 156890164 156890164 1 + A G UCEC 156890161 + 156890141 156890181 41 TGTGCCAGATTGTCAATGACCTCAGCCCTGAGGTGCCCAGC TGTGCCAGATTGTCAATGACCTCGGCCCTGAGGTGCCCAGC < 41bp 0.546680686382184 0.779780232116615 0.13240752 0.2636924 prediction 0.466199091468861 Functional Gain - NIPAL4 ENSG00000172548 CDS Human protein_coding chr5:156890161 chr5:156890164 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_113855 0 0 0 0 1 NIPAL4 chr5:156890102 3'AG 156890102 Downstream 63bp
chr7 56062600 56062600 1 + C T SKCM 56062599 + 56062579 56062619 41 TCTTACAGGGCTCGTGCAATCCGCTTCAGACAGGATGGTAA TCTTACAGGGCTCGTGCAATCTGCTTCAGACAGGATGGTAA < 41bp 0.538590080744868 0.771684688933919 0.22315356 0.1883024 prediction 0.466189216378103 Functional Gain - NIPSNAP2 ENSG00000146729 CDS Human protein_coding chr7:56062599 chr7:56062600 nonsynonymous SNV 0.866 4 22 hm5C_associated_SNPs_113857 0 0 1 0 2 NIPSNAP2 chr7:56062587 3'AG 56062587 Downstream 14bp
chr7 56062600 56062600 1 + C T SKCM 56062599 + 56062579 56062619 41 TCTTACAGGGCTCGTGCAATCCGCTTCAGACAGGATGGTAA TCTTACAGGGCTCGTGCAATCTGCTTCAGACAGGATGGTAA < 41bp 0.538590080744868 0.771684688933919 0.22315356 0.1883024 prediction 0.466189216378103 Functional Gain - NIPSNAP2 ENSG00000146729 CDS Human protein_coding chr7:56062599 chr7:56062600 nonsynonymous SNV 0.866 4 22 hm5C_associated_SNPs_113857 0 0 1 0 2 NIPSNAP2 chr7:56062681 5'GT 56062681 Upstream 82bp
chr16 28994525 28994525 1 + C T SKCM 28994524 + 28994504 28994544 41 CCTCCACAGTACGTGGTGATCCCTACCCGACGCTCCACCGC CCTCCACAGTACGTGGTGATCTCTACCCGACGCTCCACCGC < 41bp 0.567309991038918 0.800403943793563 0.11184454 0.8954621 prediction 0.46618790550929 Functional Gain - SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28994524 chr16:28994525 nonsynonymous SNV 0.876 4 22 hm5C_associated_SNPs_113858 0 0 0 0 2 SPNS1 chr16:28994513 3'AG 28994513 Downstream 13bp
chr16 28994525 28994525 1 + C T SKCM 28994524 + 28994504 28994544 41 CCTCCACAGTACGTGGTGATCCCTACCCGACGCTCCACCGC CCTCCACAGTACGTGGTGATCTCTACCCGACGCTCCACCGC < 41bp 0.567309991038918 0.800403943793563 0.11184454 0.8954621 prediction 0.46618790550929 Functional Gain - SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28994524 chr16:28994525 nonsynonymous SNV 0.876 4 22 hm5C_associated_SNPs_113858 0 0 0 0 2 SPNS1 chr16:28994611 5'GT 28994611 Upstream 87bp
chr14 75359558 75359558 1 + C T SKCM 75359557 + 75359537 75359577 41 CTGCTCCTGCTAAGGCCAAGCCGGCTGAAGCTCCTGCTGCT CTGCTCCTGCTAAGGCCAAGCTGGCTGAAGCTCCTGCTGCT < 41bp 0.489838300663151 0.733085744107968 0.8801733 0.7530316 prediction 0.466171488215935 Functional Gain - DLST ENSG00000119689 CDS Human protein_coding chr14:75359557 chr14:75359558 nonsynonymous SNV 0.971 2 22 hm5C_associated_SNPs_113860 0 0 1 3 1 DLST chr14:75359537 3'AG 75359537 Downstream 22bp
chr11 66743038 66743038 1 + C A COAD 66743037 + 66743017 66743057 41 CAGGAGCGGGTGCCGGGGAGCCTGGGGGACACAGAGCAGCT CAGGAGCGGGTGCCGGGGAGCATGGGGGACACAGAGCAGCT < 41bp 0.482219342219941 0.733078578929183 0.91804624 0.91234034 prediction 0.466157157858367 Functional Gain - C11orf86 ENSG00000173237 CDS Human protein_coding chr11:66743037 chr11:66743038 nonsynonymous SNV 0.700 3 22 hm5C_associated_SNPs_113864 0 0 0 0 1 C11orf86 chr11:66743109 5'GT 66743109 Upstream 72bp
chr16 28993316 28993316 1 + C A THCA 28993315 + 28993295 28993335 41 CCGGCATTCCTGCTGCGTTCCCGCGTGGTCCTTGGGGAGAC CCGGCATTCCTGCTGCGTTCCAGCGTGGTCCTTGGGGAGAC < 41bp 0.558491371540954 0.791560003290013 0.39662772 0.74759513 prediction 0.466137263498118 Functional Gain - SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28993315 chr16:28993316 nonsynonymous SNV 0.847 1 22 hm5C_associated_SNPs_113867 0 0 1 0 2 SPNS1 chr16:28993222 3'AG 28993222 Downstream 95bp
chr16 28993316 28993316 1 + C A THCA 28993315 + 28993295 28993335 41 CCGGCATTCCTGCTGCGTTCCCGCGTGGTCCTTGGGGAGAC CCGGCATTCCTGCTGCGTTCCAGCGTGGTCCTTGGGGAGAC < 41bp 0.558491371540954 0.791560003290013 0.39662772 0.74759513 prediction 0.466137263498118 Functional Gain - SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28993315 chr16:28993316 nonsynonymous SNV 0.847 1 22 hm5C_associated_SNPs_113867 0 0 1 0 2 SPNS1 chr16:28993377 5'GT 28993377 Upstream 62bp
chr6 105406114 105406114 1 + C A LUSC 105406113 + 105406093 105406133 41 GGATTCATCTCCATGATAAACCGAGAGGGAAGCCCCTTGGA GGATTCATCTCCATGATAAACAGAGAGGGAAGCCCCTTGGA < 41bp 0.474954206093555 0.733067748757393 0.27344733 0.84301865 prediction 0.466135497514785 Functional Gain - LIN28B ENSG00000187772 CDS Human protein_coding chr6:105406113 chr6:105406114 synonymous SNV . 0 22 hm5C_associated_SNPs_113868 0 0 1 0 1 LIN28B chr6:105406161 5'GT 105406161 Upstream 48bp
chr17 41006589 41006589 1 + C T STAD 41006588 + 41006568 41006608 41 GCTGGAGATGGAGGAGCAGGCCGCCTTCCTCGTGGGAAGCG GCTGGAGATGGAGGAGCAGGCTGCCTTCCTCGTGGGAAGCG < 41bp 0.520323421401075 0.753383925865001 0.30530357 0.25129992 prediction 0.466121008927851 Functional Gain - AOC3 ENSG00000131471 CDS Human protein_coding chr17:41006588 chr17:41006589 synonymous SNV . 0 22 hm5C_associated_SNPs_113870 0 0 1 0 1 AOC3 chr17:41006554 3'AG 41006554 Downstream 36bp
chr7 138819480 138819480 1 + C T SKCM 138819479 + 138819459 138819499 41 AGAAGAAAGGTAGGAAGATTCCAAAACTAGAGGAGCTACTT AGAAGAAAGGTAGGAAGATTCTAAAACTAGAGGAGCTACTT < 41bp 0.494513111274506 0.733058406882955 0.12728724 0.19577855 prediction 0.46611681376591 Functional Gain - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138819479 chr7:138819480 nonsynonymous SNV 0.909 4 22 hm5C_associated_SNPs_113871 0 0 1 0 2 TTC26 chr7:138819401 3'AG 138819401 Downstream 80bp
chr7 138819480 138819480 1 + C T SKCM 138819479 + 138819459 138819499 41 AGAAGAAAGGTAGGAAGATTCCAAAACTAGAGGAGCTACTT AGAAGAAAGGTAGGAAGATTCTAAAACTAGAGGAGCTACTT < 41bp 0.494513111274506 0.733058406882955 0.12728724 0.19577855 prediction 0.46611681376591 Functional Gain - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138819479 chr7:138819480 nonsynonymous SNV 0.909 4 22 hm5C_associated_SNPs_113871 0 0 1 0 2 TTC26 chr7:138819538 5'GT 138819538 Upstream 59bp
chr11 64811762 64811762 1 + C T UCEC 64811761 + 64811741 64811781 41 CTGCGCGCCTGCCCGCCCCTCCGCAAGGCCTTGGCGGTAGA CTGCGCGCCTGCCCGCCCCTCTGCAAGGCCTTGGCGGTAGA < 41bp 0.55095443088751 0.784011520902788 0.31007627 0.84405184 prediction 0.466114180030556 Functional Gain - SAC3D1 ENSG00000168061 CDS Human protein_coding chr11:64811761 chr11:64811762 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_113873 0 0 1 0 1 SAC3D1 chr11:64811697 3'AG 64811697 Downstream 66bp
chr7 420458 420458 1 + T A rs144026034 420454 + 420434 420474 41 AAACTGATCCCCAGCAAAGCCTCCTGCTGAGTGACGTCTTC AAACTGATCCCCAGCAAAGCCTCCAGCTGAGTGACGTCTTC < 41bp 0.414356853634296 0.73305706659682 0.090186894 0.9307953 prediction 0.466114133193641 Functional Gain - LOC442497 ENSG00000249574 ncRNA_exonic Human lincRNA chr7:420454 chr7:420458 . . 0 25 hm5C_associated_SNPs_113874 0 0 0 1 2 LOC442497 chr7:420384 3'AG 420384 Downstream 75bp
chr7 420458 420458 1 + T A rs144026034 420454 + 420434 420474 41 AAACTGATCCCCAGCAAAGCCTCCTGCTGAGTGACGTCTTC AAACTGATCCCCAGCAAAGCCTCCAGCTGAGTGACGTCTTC < 41bp 0.414356853634296 0.73305706659682 0.090186894 0.9307953 prediction 0.466114133193641 Functional Gain - LOC442497 ENSG00000249574 ncRNA_exonic Human lincRNA chr7:420454 chr7:420458 . . 0 25 hm5C_associated_SNPs_113874 0 0 0 1 2 LOC442497 chr7:420480 5'GT 420480 Upstream 23bp
chr1 152648545 152648545 1 + C A HNSC 152648541 + 152648521 152648561 41 CCAGCCCCCTCCCAAGTGTCCTCCCAAGTGTACCCCAAAAT CCAGCCCCCTCCCAAGTGTCCTCCAAAGTGTACCCCAAAAT < 41bp 0.30766626641227 0.733052161420739 0.13589871 0.93419564 prediction 0.466104322841479 Functional Gain - LCE2C ENSG00000187180 CDS Human protein_coding chr1:152648541 chr1:152648545 synonymous SNV . 0 25 hm5C_associated_SNPs_113876 0 0 0 0 1 LCE2C chr1:152648471 3'AG 152648471 Downstream 75bp
chrX 69500109 69500109 1 + C A UCEC 69500105 + 69500085 69500125 41 GTGTCCTACAAAGTCAGAGTCAACCTGATGGTGTCCTGTGG GTGTCCTACAAAGTCAGAGTCAACATGATGGTGTCCTGTGG < 41bp 0.304152965625472 0.733049308381939 0.1807203 0.11762187 prediction 0.466098616763878 Functional Gain - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69500105 chrX:69500109 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_113877 0 0 0 0 2 ARR3 chrX:69500045 3'AG 69500045 Downstream 65bp
chrX 69500109 69500109 1 + C A UCEC 69500105 + 69500085 69500125 41 GTGTCCTACAAAGTCAGAGTCAACCTGATGGTGTCCTGTGG GTGTCCTACAAAGTCAGAGTCAACATGATGGTGTCCTGTGG < 41bp 0.304152965625472 0.733049308381939 0.1807203 0.11762187 prediction 0.466098616763878 Functional Gain - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69500105 chrX:69500109 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_113877 0 0 0 0 2 ARR3 chrX:69500128 5'GT 69500128 Upstream 20bp
chr19 41596460 41596460 1 + C T SKCM 41596459 + 41596439 41596479 41 CTTCCAGTTCACGGCAACCTCCACGGGGCAGGTAACTGGCT CTTCCAGTTCACGGCAACCTCTACGGGGCAGGTAACTGGCT < 41bp 0.488312702045498 0.73304804515208 0.7001014 0.46508133 prediction 0.46609609030416 Functional Gain - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41596459 chr19:41596460 synonymous SNV . 0 22 hm5C_associated_SNPs_113879 0 0 0 0 1 CYP2A13 chr19:41596469 5'GT 41596469 Upstream 10bp
chr19 14574771 14574771 1 + C T SKCM 14574770 + 14574750 14574790 41 GCTTCTCCAGGATCCGAGGCCCGGACCACGGGGTAAGGAAG GCTTCTCCAGGATCCGAGGCCTGGACCACGGGGTAAGGAAG < 41bp 0.540662738541907 0.773707914816271 0.38177162 0.36909056 prediction 0.466090352548728 Functional Gain - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574770 chr19:14574771 nonsynonymous SNV 0.041 2 22 hm5C_associated_SNPs_113882 0 0 1 0 1 PKN1 chr19:14574781 5'GT 14574781 Upstream 11bp
chr1 213147353 213147353 1 + C T SKCM 213147352 + 213147332 213147372 41 AGTGAGAAGCCGGGGAAAATCCCTGTCCCCCAGAAGGAGAC AGTGAGAAGCCGGGGAAAATCTCTGTCCCCCAGAAGGAGAC < 41bp 0.586077604178851 0.819120383800023 0.40004498 0.38433957 prediction 0.466085559242345 Functional Gain - VASH2 ENSG00000143494 CDS Human protein_coding chr1:213147352 chr1:213147353 synonymous SNV . 0 22 hm5C_associated_SNPs_113884 0 0 1 0 2 VASH2 chr1:213147297 3'AG 213147297 Downstream 57bp
chr1 213147353 213147353 1 + C T SKCM 213147352 + 213147332 213147372 41 AGTGAGAAGCCGGGGAAAATCCCTGTCCCCCAGAAGGAGAC AGTGAGAAGCCGGGGAAAATCTCTGTCCCCCAGAAGGAGAC < 41bp 0.586077604178851 0.819120383800023 0.40004498 0.38433957 prediction 0.466085559242345 Functional Gain - VASH2 ENSG00000143494 CDS Human protein_coding chr1:213147352 chr1:213147353 synonymous SNV . 0 22 hm5C_associated_SNPs_113884 0 0 1 0 2 VASH2 chr1:213147412 5'GT 213147412 Upstream 60bp
chr7 89982177 89982177 1 + C T ACC 89982176 + 89982156 89982196 41 ACTCTTCACCAGGGGAGGATCCGGTGGAATGGGTTATCCTC ACTCTTCACCAGGGGAGGATCTGGTGGAATGGGTTATCCTC < 41bp 0.522498210473798 0.755535908371175 0.88711 0.6484641 prediction 0.466075395794754 Functional Gain - GTPBP10 ENSG00000105793 CDS Human protein_coding chr7:89982176 chr7:89982177 synonymous SNV . 0 22 hm5C_associated_SNPs_113886 0 0 1 0 1 GTPBP10 chr7:89982130 3'AG 89982130 Downstream 48bp
chr16 57088685 57088685 1 + C T LAML 57088684 + 57088664 57088704 41 CTGAGCCAGACGGGACTGTCCCCGAAAAGCCCCTTCCTGCT CTGAGCCAGACGGGACTGTCCTCGAAAAGCCCCTTCCTGCT < 41bp 0.551910244647279 0.784947233418614 0.04842958 0.8150815 prediction 0.466073977542671 Functional Gain - NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57088684 chr16:57088685 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_113887 0 0 0 1 2 NLRC5 chr16:57088663 3'AG 57088663 Downstream 23bp
chr16 57088685 57088685 1 + C T LAML 57088684 + 57088664 57088704 41 CTGAGCCAGACGGGACTGTCCCCGAAAAGCCCCTTCCTGCT CTGAGCCAGACGGGACTGTCCTCGAAAAGCCCCTTCCTGCT < 41bp 0.551910244647279 0.784947233418614 0.04842958 0.8150815 prediction 0.466073977542671 Functional Gain - NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57088684 chr16:57088685 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_113887 0 0 0 1 2 NLRC5 chr16:57088752 5'GT 57088752 Upstream 68bp
chr19 41086819 41086819 1 + C A rs114925319 41086815 + 41086795 41086835 41 AGATCCTGCTATGGGCTCTGCAGGCGGAAGGCGGTGGCTCC AGATCCTGCTATGGGCTCTGCAGGAGGAAGGCGGTGGCTCC < 41bp 0.697607995216194 0.930639635768232 0.8372062 0.8590625 prediction 0.466063281104078 Functional Gain - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41086815 chr19:41086819 nonsynonymous SNV 0.981 0 25 hm5C_associated_SNPs_113892 0 0 1 0 1 SHKBP1 chr19:41086842 5'GT 41086842 Upstream 24bp
chr19 14507908 14507908 1 + C T UCEC 14507907 + 14507887 14507927 41 AGATGTGAATGAATGCACCTCCGGACAAAACCCGTGCCACA AGATGTGAATGAATGCACCTCTGGACAAAACCCGTGCCACA < 41bp 0.510252655608112 0.743273921729952 0.5093402 0.27944693 prediction 0.466042532243679 Functional Gain - ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14507907 chr19:14507908 synonymous SNV . 0 22 hm5C_associated_SNPs_113895 0 0 1 0 1 ADGRE5 chr19:14507889 3'AG 14507889 Downstream 20bp
chr19 38899466 38899466 1 + C T SKCM 38899465 + 38899445 38899485 41 CCCATGCCCACCTGGAGGAGCCGAAGAGAGGATGGAGGCCC CCCATGCCCACCTGGAGGAGCTGAAGAGAGGATGGAGGCCC < 41bp 0.521541430754233 0.754562608454896 0.6088317 0.46899316 prediction 0.466042355401327 Functional Gain - FAM98C ENSG00000130244 CDS Human protein_coding chr19:38899465 chr19:38899466 stopgain 0.318 0 22 hm5C_associated_SNPs_113896 0 0 1 0 1 FAM98C chr19:38899391 3'AG 38899391 Downstream 76bp
chr6 74183325 74183325 1 + C T LIHC 74183324 + 74183304 74183344 41 GTATTCTAAACAAGCATATACCGGACAATCCATCCATACCA GTATTCTAAACAAGCATATACTGGACAATCCATCCATACCA < 41bp 0.522812479901833 0.755830850299861 0.10224086 0.01823607 prediction 0.466036740796054 Functional Gain - MTO1 ENSG00000135297 CDS Human protein_coding chr6:74183324 chr6:74183325 nonsynonymous SNV 0.058 3 22 hm5C_associated_SNPs_113897 0 0 1 0 1 MTO1 chr6:74183377 5'GT 74183377 Upstream 53bp
chr12 123889608 123889608 1 + A G COAD 123889605 + 123889585 123889625 41 ACATGTACTATTTTCAGTATCTGAGCAAAACCTACTGGTGA ACATGTACTATTTTCAGTATCTGGGCAAAACCTACTGGTGA < 41bp 0.520189030145508 0.753198386198111 0.9030236 0.92669934 prediction 0.466018712105206 Functional Gain - KMT5A ENSG00000183955 CDS Human protein_coding chr12:123889605 chr12:123889608 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_113899 0 0 1 0 1 KMT5A chr12:123889621 5'GT 123889621 Upstream 14bp
chr19 49261257 49261257 1 + C G SKCM 49261253 + 49261233 49261273 41 AGGACGGATACAATGTTTACCAGTCCGAAGCCCACGGCCTC AGGACGGATACAATGTTTACCAGTGCGAAGCCCACGGCCTC < 41bp 0.429534820312855 0.73300555302257 0.3125519 0.54617655 prediction 0.46601110604514 Functional Gain - FGF21 ENSG00000105550 CDS Human protein_coding chr19:49261253 chr19:49261257 nonsynonymous SNV 0.011 5 25 hm5C_associated_SNPs_113901 0 0 0 0 1 FGF21 chr19:49261187 3'AG 49261187 Downstream 71bp
chr3 169998045 169998045 1 + T G UCEC 169998043 + 169998023 169998063 41 CACCAGGGAAAGTGGCAAAGCTTCATCCAGTCTAGGTCTTC CACCAGGGAAAGTGGCAAAGCTGCATCCAGTCTAGGTCTTC < 41bp 0.416842921162104 0.732997291794781 0.07417336 0.10533199 prediction 0.465994583589563 Functional Gain - PRKCI ENSG00000163558 CDS Human protein_coding chr3:169998043 chr3:169998045 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_113905 0 0 0 0 1 PRKCI chr3:169998015 3'AG 169998015 Downstream 31bp
chr10 44101908 44101908 1 + C A rs56333360 44101904 + 44101884 44101924 41 GCGTGGTGCGAGCGCTGCACCAGCCCCTGGCTGGTGGTTAC GCGTGGTGCGAGCGCTGCACCAGCACCTGGCTGGTGGTTAC < 41bp 0.676948181207146 0.909942560974469 0.19041058 0.19045901 prediction 0.465988759534646 Functional Gain - ZNF485 ENSG00000198298 UTR5 Human protein_coding chr10:44101904 chr10:44101908 . . 0 25 hm5C_associated_SNPs_113906 0 0 1 0 1 ZNF485 chr10:44101994 5'GT 44101994 Upstream 87bp
chr4 89414248 89414248 1 + C T STAD 89414247 + 89414227 89414267 41 TGTTTGCAGAGATGATCCAGCCGGAATATGGGATGTTCATG TGTTTGCAGAGATGATCCAGCTGGAATATGGGATGTTCATG < 41bp 0.5447972884395 0.777791465629878 0.26218897 0.07148725 prediction 0.465988354380756 Functional Gain - HERC5 ENSG00000138646 CDS Human protein_coding chr4:89414247 chr4:89414248 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_113907 0 0 1 0 2 HERC5 chr4:89414163 3'AG 89414163 Downstream 86bp
chr4 89414248 89414248 1 + C T STAD 89414247 + 89414227 89414267 41 TGTTTGCAGAGATGATCCAGCCGGAATATGGGATGTTCATG TGTTTGCAGAGATGATCCAGCTGGAATATGGGATGTTCATG < 41bp 0.5447972884395 0.777791465629878 0.26218897 0.07148725 prediction 0.465988354380756 Functional Gain - HERC5 ENSG00000138646 CDS Human protein_coding chr4:89414247 chr4:89414248 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_113907 0 0 1 0 2 HERC5 chr4:89414306 5'GT 89414306 Upstream 59bp
chr18 60036692 60036692 1 + C T SKCM 60036691 + 60036671 60036711 41 AGGTGCCGGGTCTGGAAGCTCCCCTGGTGGCCAGTCCCCTG AGGTGCCGGGTCTGGAAGCTCTCCTGGTGGCCAGTCCCCTG < 41bp 0.479999850083885 0.732987357879923 0.14545527 0.46660376 prediction 0.465974715759847 Functional Gain - TNFRSF11A ENSG00000141655 CDS Human protein_coding chr18:60036691 chr18:60036692 synonymous SNV . 0 22 hm5C_associated_SNPs_113909 0 0 0 0 1 TNFRSF11A chr18:60036717 5'GT 60036717 Upstream 26bp
chr1 209880471 209880471 1 + C A UCEC 209880467 + 209880447 209880487 41 GCATTGTTGTCGTCTCCTCTCTGGCTGGTAAGTGGGACAGG GCATTGTTGTCGTCTCCTCTCTGGATGGTAAGTGGGACAGG < 41bp 0.697058803105177 0.930041898595447 0.21911702 0.34226897 prediction 0.465966190980539 Functional Gain - HSD11B1 ENSG00000117594 CDS Human protein_coding chr1:209880467 chr1:209880471 nonsynonymous SNV 0.826 3 25 hm5C_associated_SNPs_113911 0 0 0 0 1 HSD11B1 chr1:209880473 5'GT 209880473 Upstream 3bp
chr5 633964 633964 1 + T C UCEC 633962 + 633942 633982 41 GATGCGGATGACGAGGCAGTCCTGAACCTCATTGCAGAGTG GATGCGGATGACGAGGCAGTCCCGAACCTCATTGCAGAGTG < 41bp 0.593445799950595 0.826428077798886 0.35918874 0.54208523 prediction 0.465964555696582 Functional Gain - CEP72 ENSG00000112877 CDS Human protein_coding chr5:633962 chr5:633964 nonsynonymous SNV 0.983 3 23 hm5C_associated_SNPs_113912 0 0 1 0 2 CEP72 chr5:633884 3'AG 633884 Downstream 81bp
chr5 633964 633964 1 + T C UCEC 633962 + 633942 633982 41 GATGCGGATGACGAGGCAGTCCTGAACCTCATTGCAGAGTG GATGCGGATGACGAGGCAGTCCCGAACCTCATTGCAGAGTG < 41bp 0.593445799950595 0.826428077798886 0.35918874 0.54208523 prediction 0.465964555696582 Functional Gain - CEP72 ENSG00000112877 CDS Human protein_coding chr5:633962 chr5:633964 nonsynonymous SNV 0.983 3 23 hm5C_associated_SNPs_113912 0 0 1 0 2 CEP72 chr5:634062 5'GT 634062 Upstream 99bp
chr20 44641964 44641964 1 + C G LUAD 44641960 + 44641940 44641980 41 GCAGCCCACGGCTCCCCCGACGGTCTGCCCCACCGGACCCC GCAGCCCACGGCTCCCCCGACGGTGTGCCCCACCGGACCCC < 41bp 0.437355474926129 0.732982086871452 0.21230659 0.45345682 prediction 0.465964173742905 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44641960 chr20:44641964 synonymous SNV . 0 25 hm5C_associated_SNPs_113913 0 0 0 0 1 MMP9 chr20:44641894 3'AG 44641894 Downstream 71bp
chrX 24746001 24746001 1 + T C UCEC 24745999 + 24745979 24746019 41 GTCAGTCCACCACCGCTTGTCGTGATGGCTTTCAGCATGAA GTCAGTCCACCACCGCTTGTCGCGATGGCTTTCAGCATGAA < 41bp 0.437447040115116 0.732979150895664 0.24162468 0.22700003 prediction 0.465958301791328 Functional Gain - POLA1 ENSG00000101868 CDS Human protein_coding chrX:24745999 chrX:24746001 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_113914 0 0 1 0 1 POLA1 chrX:24746053 5'GT 24746053 Upstream 53bp
chr8 120940800 120940800 1 + C A STAD 120940799 + 120940779 120940819 41 CTCATGCAGAAATTAGCAGACCGGGGCATTATTCACCATGG CTCATGCAGAAATTAGCAGACAGGGGCATTATTCACCATGG < 41bp 0.558798305485667 0.791769073194107 0.54139155 0.61626756 prediction 0.465941535416879 Functional Gain - DEPTOR ENSG00000155792 CDS Human protein_coding chr8:120940799 chr8:120940800 synonymous SNV . 0 22 hm5C_associated_SNPs_113919 0 0 0 0 1 DEPTOR chr8:120940818 5'GT 120940818 Upstream 19bp
chr14 24771230 24771230 1 + C T COAD 24771229 + 24771209 24771249 41 GTGGCTTTACAGGTTTTACACCGCAAACTTCCCCAGTTTTG GTGGCTTTACAGGTTTTACACTGCAAACTTCCCCAGTTTTG < 41bp 0.551540281762711 0.784505021515332 0.27379847 0.32943356 prediction 0.465929479505243 Functional Gain - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24771229 chr14:24771230 nonsynonymous SNV 0.003 3 22 hm5C_associated_SNPs_113921 0 0 1 0 1 NOP9 chr14:24771312 5'GT 24771312 Upstream 83bp
chr19 7711153 7711153 1 + C G rs142105943 7711149 + 7711129 7711169 41 CTGTAGGGCTCGGGGACCTCCAGCCGGCTGGAGCCGAGAGA CTGTAGGGCTCGGGGACCTCCAGCGGGCTGGAGCCGAGAGA < 41bp 0.61319195459438 0.846151066482542 0.88851905 0.93147564 prediction 0.465918223776324 Functional Gain - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7711149 chr19:7711153 nonsynonymous SNV 0.213 0 25 hm5C_associated_SNPs_113922 0 0 1 0 2 STXBP2 chr19:7711135 3'AG 7711135 Downstream 19bp
chr19 7711153 7711153 1 + C G rs142105943 7711149 + 7711129 7711169 41 CTGTAGGGCTCGGGGACCTCCAGCCGGCTGGAGCCGAGAGA CTGTAGGGCTCGGGGACCTCCAGCGGGCTGGAGCCGAGAGA < 41bp 0.61319195459438 0.846151066482542 0.88851905 0.93147564 prediction 0.465918223776324 Functional Gain - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7711149 chr19:7711153 nonsynonymous SNV 0.213 0 25 hm5C_associated_SNPs_113922 0 0 1 0 2 STXBP2 chr19:7711230 5'GT 7711230 Upstream 78bp
chrX 21627282 21627282 1 + C A LUSC 21627281 + 21627261 21627301 41 TCTTCTCATGAGGAGTTTCGCCAGGAAGTAACTGGGAGCAG TCTTCTCATGAGGAGTTTCGCAAGGAAGTAACTGGGAGCAG < 41bp 0.55981554296043 0.792773966564802 0.72653466 0.9028517 prediction 0.465916847208744 Functional Gain - CNKSR2 ENSG00000149970 CDS Human protein_coding chrX:21627281 chrX:21627282 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_113923 0 0 0 0 1 CNKSR2 chrX:21627189 3'AG 21627189 Downstream 94bp
chr5 64920902 64920902 1 + C A UCEC 64920901 + 64920881 64920921 41 GGTCAAAATGGAAGTGAATCCCCCTAAACAGGAGCACCTGC GGTCAAAATGGAAGTGAATCCACCTAAACAGGAGCACCTGC < 41bp 0.484441298681874 0.732951736004043 0.07648954 0.08039421 prediction 0.465903472008086 Functional Gain - TRAPPC13 ENSG00000113597 CDS Human protein_coding chr5:64920901 chr5:64920902 synonymous SNV . 0 22 hm5C_associated_SNPs_113924 0 0 1 0 1 TRAPPC13 chr5:64920933 5'GT 64920933 Upstream 32bp
chr11 114168708 114168708 1 + T A LUSC 114168704 + 114168684 114168724 41 GGAGACCTGCTGATTGACATCGGCTCTGGCCCCACTATCTA GGAGACCTGCTGATTGACATCGGCACTGGCCCCACTATCTA < 41bp 0.656999339468671 0.889949130332539 0.21788612 0.18442404 prediction 0.465899581727736 Functional Gain - NNMT ENSG00000166741 CDS Human protein_coding chr11:114168704 chr11:114168708 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_113925 0 0 1 0 1 NNMT chr11:114168673 3'AG 114168673 Downstream 36bp
chr4 88731865 88731865 1 + C T COAD 88731864 + 88731844 88731884 41 ACTGGGCTATGGAGAGGACGCCACGCCTGGCACAGGGTATA ACTGGGCTATGGAGAGGACGCTACGCCTGGCACAGGGTATA < 41bp 0.491519781601816 0.732948739902937 0.21924326 0.14669195 prediction 0.465897479805874 Functional Gain - IBSP ENSG00000029559 CDS Human protein_coding chr4:88731864 chr4:88731865 synonymous SNV . 0 22 hm5C_associated_SNPs_113927 0 0 0 0 1 IBSP chr4:88731916 5'GT 88731916 Upstream 52bp
chr6 36442821 36442821 1 + C T STAD 36442820 + 36442800 36442840 41 CACAGATTTTCACTGCTCATCCGGATACCATGCTGGGAAGG CACAGATTTTCACTGCTCATCTGGATACCATGCTGGGAAGG < 41bp 0.490214390842462 0.732946912848923 0.45978644 0.37718138 prediction 0.465893825697847 Functional Gain - KCTD20 ENSG00000112078 CDS Human protein_coding chr6:36442820 chr6:36442821 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_113929 0 0 1 0 1 KCTD20 chr6:36442839 5'GT 36442839 Upstream 19bp
chr3 148601543 148601543 1 + C A LUSC 148601542 + 148601522 148601562 41 ATCACCTTCCATTCCTACTCCCAGATGCTATTGTTTCCCTA ATCACCTTCCATTCCTACTCCAAGATGCTATTGTTTCCCTA < 41bp 0.476708744511164 0.732941992249976 0.06203854 0.07553056 prediction 0.465883984499952 Functional Gain - CPA3 ENSG00000163751 CDS Human protein_coding chr3:148601542 chr3:148601543 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_113933 0 0 0 0 1 CPA3 chr3:148601602 5'GT 148601602 Upstream 60bp
chr2 175268982 175268982 1 + C A STAD 175268978 + 175268958 175268998 41 AGCATATTCCTATCTTGACACAGCCAAGATGATGACTTCAT AGCATATTCCTATCTTGACACAGCAAAGATGATGACTTCAT < 41bp 0.31041315964275 0.732936083034758 0.10600111 0.1420863 prediction 0.465872166069516 Functional Gain - SCRN3 ENSG00000144306 CDS Human protein_coding chr2:175268978 chr2:175268982 synonymous SNV . 0 25 hm5C_associated_SNPs_113936 0 0 0 0 1 SCRN3 chr2:175269043 5'GT 175269043 Upstream 62bp
chr10 13222497 13222497 1 + A G UCEC 13222494 + 13222474 13222514 41 AGAAAATGACCGGCCGAAAACTGATCAGACTGTCTCAGATC AGAAAATGACCGGCCGAAAACTGGTCAGACTGTCTCAGATC < 41bp 0.515696468249949 0.74863031161594 0.181649 0.20369819 prediction 0.465867686731983 Functional Gain - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13222494 chr10:13222497 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_113938 0 0 1 0 1 MCM10 chr10:13222442 3'AG 13222442 Downstream 56bp
chr3 56591237 56591237 1 + T C rs537934050 56591235 + 56591215 56591255 41 CAACCGACGTACACAAGGGGCTTGAGCGTTCTGTGGAGAGA CAACCGACGTACACAAGGGGCTCGAGCGTTCTGTGGAGAGA < 41bp 0.51235789723738 0.745287122181844 0.16644767 0.29012096 prediction 0.465858449888929 Functional Gain - CCDC66 ENSG00000180376 UTR5 Human protein_coding chr3:56591235 chr3:56591237 . . 0 23 hm5C_associated_SNPs_113939 0 0 1 0 2 CCDC66 chr3:56591262 5'GT 56591262 Upstream 26bp
chr3 56591237 56591237 1 + T C rs537934050 56591235 + 56591215 56591255 41 CAACCGACGTACACAAGGGGCTTGAGCGTTCTGTGGAGAGA CAACCGACGTACACAAGGGGCTCGAGCGTTCTGTGGAGAGA < 41bp 0.51235789723738 0.745287122181844 0.16644767 0.29012096 prediction 0.465858449888929 Functional Gain - CCDC66 ENSG00000180376 UTR5 Human protein_coding chr3:56591235 chr3:56591237 . . 0 23 hm5C_associated_SNPs_113939 0 0 1 0 2 CCDC66 chr3:56591281 5'GT 56591281 Upstream 45bp
chr9 71862951 71862951 1 + C T UCEC 71862950 + 71862930 71862970 41 GGAAGGGATGGATGATGACCCCGAAGACCGCATGTCCTACT GGAAGGGATGGATGATGACCCTGAAGACCGCATGTCCTACT < 41bp 0.492676726964895 0.732924238422835 0.04267937 0.039031357 prediction 0.465848476845671 Functional Gain - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71862950 chr9:71862951 synonymous SNV . 0 22 hm5C_associated_SNPs_113941 2 0 1 0 1 TJP2 chr9:71862928 3'AG 71862928 Downstream 24bp
chr1 55473986 55473986 1 + T C UCEC 55473984 + 55473964 55474004 41 GCAGCCCCAATGCATCTCCACATGACAGGGAGGAAGCTTGT GCAGCCCCAATGCATCTCCACACGACAGGGAGGAAGCTTGT < 41bp 0.578217587071497 0.81113881738395 0.008924514 0.0029347837 prediction 0.465842460624905 Functional Gain - BSND ENSG00000162399 CDS Human protein_coding chr1:55473984 chr1:55473986 synonymous SNV . 0 23 hm5C_associated_SNPs_113943 0 0 0 0 1 BSND chr1:55473887 3'AG 55473887 Downstream 100bp
chr11 65619959 65619959 1 + C T COAD 65619958 + 65619938 65619978 41 GCTGGAGGGCCGGGTGGCTTCCGATGAGGACCTGAAGCTGT GCTGGAGGGCCGGGTGGCTTCTGATGAGGACCTGAAGCTGT < 41bp 0.487900011059488 0.732912465198232 0.4951436 0.3690415 prediction 0.465824930396465 Functional Gain - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65619958 chr11:65619959 synonymous SNV . 0 22 hm5C_associated_SNPs_113946 0 0 1 0 2 SNX32 chr11:65619936 3'AG 65619936 Downstream 24bp
chr11 65619959 65619959 1 + C T COAD 65619958 + 65619938 65619978 41 GCTGGAGGGCCGGGTGGCTTCCGATGAGGACCTGAAGCTGT GCTGGAGGGCCGGGTGGCTTCTGATGAGGACCTGAAGCTGT < 41bp 0.487900011059488 0.732912465198232 0.4951436 0.3690415 prediction 0.465824930396465 Functional Gain - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65619958 chr11:65619959 synonymous SNV . 0 22 hm5C_associated_SNPs_113946 0 0 1 0 2 SNX32 chr11:65620022 5'GT 65620022 Upstream 64bp
chr17 63221551 63221551 1 + C A LUAD 63221550 + 63221530 63221570 41 GTCCCACGGGAGGGTGCAGCCCCTGGGGGACGTGGGCCAGC GTCCCACGGGAGGGTGCAGCCACTGGGGGACGTGGGCCAGC < 41bp 0.570273860972054 0.803184150212971 0.69707644 0.8658011 prediction 0.465820578481834 Functional Gain - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63221550 chr17:63221551 synonymous SNV . 0 22 hm5C_associated_SNPs_113948 0 0 0 0 1 RGS9 chr17:63221604 5'GT 63221604 Upstream 54bp
chr11 69063100 69063100 1 + C A UCEC 69063099 + 69063079 69063119 41 GGACTCGTTGCTCATGTTCACCCGGCAGGCTGGACACTTCG GGACTCGTTGCTCATGTTCACACGGCAGGCTGGACACTTCG < 41bp 0.478702450951996 0.732906559394816 0.13870385 0.25612158 prediction 0.465813118789632 Functional Gain - MYEOV ENSG00000172927 CDS Human protein_coding chr11:69063099 chr11:69063100 synonymous SNV . 0 22 hm5C_associated_SNPs_113949 0 0 0 0 1 MYEOV chr11:69063059 3'AG 69063059 Downstream 42bp
chrX 2998966 2998966 1 + A G UCEC 2998963 + 2998943 2998983 41 AGTGGTAATAGACGTGTCATCCAAAATCTTGCAGTCCCCGC AGTGGTAATAGACGTGTCATCCAGAATCTTGCAGTCCCCGC < 41bp 0.538236513100137 0.771139143608447 0.11221117 0.3893753 prediction 0.465805261016619 Functional Gain - ARSF ENSG00000062096 CDS Human protein_coding chrX:2998963 chrX:2998966 synonymous SNV . 0 24 hm5C_associated_SNPs_113950 0 0 0 0 2 ARSF chrX:2998932 3'AG 2998932 Downstream 35bp
chrX 2998966 2998966 1 + A G UCEC 2998963 + 2998943 2998983 41 AGTGGTAATAGACGTGTCATCCAAAATCTTGCAGTCCCCGC AGTGGTAATAGACGTGTCATCCAGAATCTTGCAGTCCCCGC < 41bp 0.538236513100137 0.771139143608447 0.11221117 0.3893753 prediction 0.465805261016619 Functional Gain - ARSF ENSG00000062096 CDS Human protein_coding chrX:2998963 chrX:2998966 synonymous SNV . 0 24 hm5C_associated_SNPs_113950 0 0 0 0 2 ARSF chrX:2999054 5'GT 2999054 Upstream 89bp
chr3 122001057 122001057 1 + C T SKCM 122001056 + 122001036 122001076 41 GCTTTGAGTGTGTGGAGTGTCCTGATGGGGAGTATAGTGAT GCTTTGAGTGTGTGGAGTGTCTTGATGGGGAGTATAGTGAT < 41bp 0.561371952430534 0.794267907791129 0.047426373 0.11823851 prediction 0.465791910721192 Functional Gain - CASR ENSG00000036828 CDS Human protein_coding chr3:122001056 chr3:122001057 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_113953 0 0 0 0 2 CASR chr3:122000960 3'AG 122000960 Downstream 98bp
chr3 122001057 122001057 1 + C T SKCM 122001056 + 122001036 122001076 41 GCTTTGAGTGTGTGGAGTGTCCTGATGGGGAGTATAGTGAT GCTTTGAGTGTGTGGAGTGTCTTGATGGGGAGTATAGTGAT < 41bp 0.561371952430534 0.794267907791129 0.047426373 0.11823851 prediction 0.465791910721192 Functional Gain - CASR ENSG00000036828 CDS Human protein_coding chr3:122001056 chr3:122001057 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_113953 0 0 0 0 2 CASR chr3:122001083 5'GT 122001083 Upstream 27bp
chr9 140777293 140777293 1 - G A STAD 140777294 - 140777274 140777314 41 TCCATGACGTTCCAGCCGTTCCGCAGGTAAGAGCCCTTGTG TCCATGACGTTCCAGCCGTTCTGCAGGTAAGAGCCCTTGTG < 41bp 0.523429132926929 0.756324547223704 0.29533806 0.23290163 prediction 0.46579082859355 Functional Gain - CACNA1B ENSG00000148408 CDS Human protein_coding chr9:140777294 chr9:140777293 nonsynonymous SNV 0.837 5 22 hm5C_associated_SNPs_113954 0 0 0 0 1 CACNA1B chr9:140777289 5'GT 140777289 Upstream 5bp
chr14 97009224 97009224 1 + C T UCEC 97009223 + 97009203 97009243 41 TTCCAGCACCCAAAGAAAATCCCGACAAGTAAGCCCTTTTC TTCCAGCACCCAAAGAAAATCTCGACAAGTAAGCCCTTTTC < 41bp 0.50011176878805 0.733004450748634 0.038393945 0.24320206 prediction 0.465785363921167 Functional Gain - PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97009223 chr14:97009224 nonsynonymous SNV 0.999 0 22 hm5C_associated_SNPs_113957 0 0 1 0 1 PAPOLA chr14:97009230 5'GT 97009230 Upstream 7bp
chr19 55020273 55020273 1 + C A HNSC 55020269 + 55020249 55020289 41 CTCTGGAGGCCCGGACTCCCCGGACACAGAGCCCGGCTCCT CTCTGGAGGCCCGGACTCCCCGGAAACAGAGCCCGGCTCCT < 41bp 0.682749415443528 0.915638019397118 0.49269995 0.8057244 prediction 0.46577720790718 Functional Gain - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55020269 chr19:55020273 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_113958 0 0 0 0 2 LAIR2 chr19:55020245 3'AG 55020245 Downstream 29bp
chr19 55020273 55020273 1 + C A HNSC 55020269 + 55020249 55020289 41 CTCTGGAGGCCCGGACTCCCCGGACACAGAGCCCGGCTCCT CTCTGGAGGCCCGGACTCCCCGGAAACAGAGCCCGGCTCCT < 41bp 0.682749415443528 0.915638019397118 0.49269995 0.8057244 prediction 0.46577720790718 Functional Gain - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55020269 chr19:55020273 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_113958 0 0 0 0 2 LAIR2 chr19:55020295 5'GT 55020295 Upstream 23bp
chr5 43246100 43246100 1 + C A LUSC 43246099 + 43246079 43246119 41 GGGAAACGGATAGGCTTCTACCGAATTCGAGGGGAAATCGG GGGAAACGGATAGGCTTCTACAGAATTCGAGGGGAAATCGG < 41bp 0.569709583529145 0.802596946291608 0.5349602 0.18688259 prediction 0.465774725524927 Functional Gain - NIM1K ENSG00000177453 CDS Human protein_coding chr5:43246099 chr5:43246100 synonymous SNV . 0 22 hm5C_associated_SNPs_113959 0 0 0 0 1 NIM1K chr5:43246169 5'GT 43246169 Upstream 70bp
chr16 58538305 58538305 1 + C G BLCA 58538304 + 58538284 58538324 41 GCAGCTGGCTGCCATGCTCCCCAGCGTGGTGCAGCATTTCG GCAGCTGGCTGCCATGCTCCCGAGCGTGGTGCAGCATTTCG < 41bp 0.416361125841086 0.732887278330041 0.23918584 0.51991063 prediction 0.465774556660083 Functional Gain - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58538304 chr16:58538305 synonymous SNV . 0 22 hm5C_associated_SNPs_113960 0 0 0 0 2 NDRG4 chr16:58538263 3'AG 58538263 Downstream 43bp
chr16 58538305 58538305 1 + C G BLCA 58538304 + 58538284 58538324 41 GCAGCTGGCTGCCATGCTCCCCAGCGTGGTGCAGCATTTCG GCAGCTGGCTGCCATGCTCCCGAGCGTGGTGCAGCATTTCG < 41bp 0.416361125841086 0.732887278330041 0.23918584 0.51991063 prediction 0.465774556660083 Functional Gain - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58538304 chr16:58538305 synonymous SNV . 0 22 hm5C_associated_SNPs_113960 0 0 0 0 2 NDRG4 chr16:58538325 5'GT 58538325 Upstream 21bp
chr12 4791454 4791454 1 + T G UCEC 4791451 + 4791431 4791471 41 GTTCCTCCCATTCCCCTTGCCGCTTTTTGCCTATCGGTAAG GTTCCTCCCATTCCCCTTGCCGCGTTTTGCCTATCGGTAAG < 41bp 0.337861902194722 0.732881595523777 0.011735231 0.19724736 prediction 0.465763191047554 Functional Gain - NDUFA9 ENSG00000139180;ENSG00000255639 CDS Human other chr12:4791451 chr12:4791454 nonsynonymous SNV 0.328 0 24 hm5C_associated_SNPs_113962 0 0 1 0 2 NDUFA9 chr12:4791371 3'AG 4791371 Downstream 84bp
chr12 4791454 4791454 1 + T G UCEC 4791451 + 4791431 4791471 41 GTTCCTCCCATTCCCCTTGCCGCTTTTTGCCTATCGGTAAG GTTCCTCCCATTCCCCTTGCCGCGTTTTGCCTATCGGTAAG < 41bp 0.337861902194722 0.732881595523777 0.011735231 0.19724736 prediction 0.465763191047554 Functional Gain - NDUFA9 ENSG00000139180;ENSG00000255639 CDS Human other chr12:4791451 chr12:4791454 nonsynonymous SNV 0.328 0 24 hm5C_associated_SNPs_113962 0 0 1 0 2 NDUFA9 chr12:4791466 5'GT 4791466 Upstream 13bp
chr17 27075299 27075299 1 + C T LUSC 27075298 + 27075278 27075318 41 AGAGCCATGAGGGTATGTGCCCCCAGGAGAGTGTCTACTGT AGAGCCATGAGGGTATGTGCCTCCAGGAGAGTGTCTACTGT < 41bp 0.588211908268082 0.821092162679156 0.09736067 0.9435415 prediction 0.465760508822147 Functional Gain - TRAF4 ENSG00000076604 CDS Human protein_coding chr17:27075298 chr17:27075299 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_113963 0 0 1 0 1 TRAF4 chr17:27075280 3'AG 27075280 Downstream 20bp
chr12 109510129 109510129 1 + C G LUSC 109510128 + 109510108 109510148 41 AGCAGCAGTCAGAAATAACTCCCAAACAAATTACCTGCCGC AGCAGCAGTCAGAAATAACTCGCAAACAAATTACCTGCCGC < 41bp 0.416964580090948 0.732879181270162 0.3411675 0.19417557 prediction 0.465758362540324 Functional Gain - USP30 ENSG00000135093 CDS Human protein_coding chr12:109510128 chr12:109510129 nonsynonymous SNV 0.993 0 22 hm5C_associated_SNPs_113964 0 0 1 0 2 USP30 chr12:109510110 3'AG 109510110 Downstream 20bp
chr12 109510129 109510129 1 + C G LUSC 109510128 + 109510108 109510148 41 AGCAGCAGTCAGAAATAACTCCCAAACAAATTACCTGCCGC AGCAGCAGTCAGAAATAACTCGCAAACAAATTACCTGCCGC < 41bp 0.416964580090948 0.732879181270162 0.3411675 0.19417557 prediction 0.465758362540324 Functional Gain - USP30 ENSG00000135093 CDS Human protein_coding chr12:109510128 chr12:109510129 nonsynonymous SNV 0.993 0 22 hm5C_associated_SNPs_113964 0 0 1 0 2 USP30 chr12:109510155 5'GT 109510155 Upstream 27bp
chr3 52281754 52281754 1 + C A STAD 52281753 + 52281733 52281773 41 CCAGATGGGCGGCTGCACAGCCCTGGTGGCTGTGTCCCTGC CCAGATGGGCGGCTGCACAGCACTGGTGGCTGTGTCCCTGC < 41bp 0.556096907144034 0.788970497452719 0.079049736 0.19507873 prediction 0.46574718061737 Functional Gain - PPM1M ENSG00000164088 CDS Human protein_coding chr3:52281753 chr3:52281754 synonymous SNV . 0 22 hm5C_associated_SNPs_113968 0 0 0 0 2 PPM1M chr3:52281698 3'AG 52281698 Downstream 57bp
chr3 52281754 52281754 1 + C A STAD 52281753 + 52281733 52281773 41 CCAGATGGGCGGCTGCACAGCCCTGGTGGCTGTGTCCCTGC CCAGATGGGCGGCTGCACAGCACTGGTGGCTGTGTCCCTGC < 41bp 0.556096907144034 0.788970497452719 0.079049736 0.19507873 prediction 0.46574718061737 Functional Gain - PPM1M ENSG00000164088 CDS Human protein_coding chr3:52281753 chr3:52281754 synonymous SNV . 0 22 hm5C_associated_SNPs_113968 0 0 0 0 2 PPM1M chr3:52281810 5'GT 52281810 Upstream 57bp
chr7 73474367 73474367 1 + T A rs61734584 73474363 + 73474343 73474383 41 CGTGGCTCCCGGCATTGGCCCTGGTGGAGTTGCAGGTGAGT CGTGGCTCCCGGCATTGGCCCTGGAGGAGTTGCAGGTGAGT < 41bp 0.457031598123993 0.732873214420632 0.4054451 0.3669749 prediction 0.465746428841264 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73474363 chr7:73474367 synonymous SNV . 0 25 hm5C_associated_SNPs_113969 4 0 0 0 2 ELN chr7:73474321 3'AG 73474321 Downstream 47bp
chr7 73474367 73474367 1 + T A rs61734584 73474363 + 73474343 73474383 41 CGTGGCTCCCGGCATTGGCCCTGGTGGAGTTGCAGGTGAGT CGTGGCTCCCGGCATTGGCCCTGGAGGAGTTGCAGGTGAGT < 41bp 0.457031598123993 0.732873214420632 0.4054451 0.3669749 prediction 0.465746428841264 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73474363 chr7:73474367 synonymous SNV . 0 25 hm5C_associated_SNPs_113969 4 0 0 0 2 ELN chr7:73474377 5'GT 73474377 Upstream 11bp
chr6 43226909 43226909 1 + C T SKCM 43226908 + 43226888 43226928 41 AGGCCCTCTGAGGGGCTGGGCCCCAGTCCCCACCTTGTCCC AGGCCCTCTGAGGGGCTGGGCTCCAGTCCCCACCTTGTCCC < 41bp 0.467460078375151 0.732872148334815 0.22447532 0.91596305 prediction 0.465744296669629 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43226908 chr6:43226909 nonsynonymous SNV 0.917 0 22 hm5C_associated_SNPs_113970 0 0 0 0 1 TTBK1 chr6:43227007 5'GT 43227007 Upstream 99bp
chr10 94450100 94450100 1 + C A SKCM 94450099 + 94450079 94450119 41 CGCCCTGCTCCGCCACGACCCCCTGGGTAAGGCGGCCGGGC CGCCCTGCTCCGCCACGACCCACTGGGTAAGGCGGCCGGGC < 41bp 0.486036894850302 0.732867333204758 0.18273577 0.17878494 prediction 0.465734666409515 Functional Gain - HHEX ENSG00000152804 CDS Human protein_coding chr10:94450099 chr10:94450100 synonymous SNV . 0 22 hm5C_associated_SNPs_113971 0 0 1 0 1 HHEX chr10:94450104 5'GT 94450104 Upstream 5bp
chrX 153001826 153001826 1 + C A STAD 153001825 + 153001805 153001845 41 GAGCTGGCTGGCTACACAGCCCGGGTGCACGAGATGTTCCA GAGCTGGCTGGCTACACAGCCAGGGTGCACGAGATGTTCCA < 41bp 0.468366956479827 0.732863300582014 0.6394048 0.8987752 prediction 0.465726601164028 Functional Gain - ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153001825 chrX:153001826 synonymous SNV . 0 22 hm5C_associated_SNPs_113974 0 0 1 0 1 ABCD1 chrX:153001799 3'AG 153001799 Downstream 28bp
chr11 60699312 60699312 1 + C T HNSC 60699311 + 60699291 60699331 41 GACAAAATGGTGTGGGAAATCCTGGTGTCTGAGCGGGACAT GACAAAATGGTGTGGGAAATCTTGGTGTCTGAGCGGGACAT < 41bp 0.516871803591721 0.749735030945246 0.831572 0.7787577 prediction 0.465726454707049 Functional Gain - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60699311 chr11:60699312 synonymous SNV . 0 22 hm5C_associated_SNPs_113975 0 0 1 0 1 TMEM132A chr11:60699356 5'GT 60699356 Upstream 45bp
chr17 18702239 18702239 1 + T A CHOL 18702235 + 18702215 18702255 41 TTTGCTTTTAGTGCACTCTTCTCCTTCAGAGTAAAGTGGTT TTTGCTTTTAGTGCACTCTTCTCCATCAGAGTAAAGTGGTT < 41bp 0.379095977833188 0.732861457222409 0.23127592 0.9766594 prediction 0.465722914444818 Functional Gain - TVP23B ENSG00000171928 CDS Human protein_coding chr17:18702235 chr17:18702239 nonsynonymous SNV 0.994 3 25 hm5C_associated_SNPs_113977 0 0 1 0 1 TVP23B chr17:18702256 5'GT 18702256 Upstream 18bp
chr1 36557328 36557328 1 + C T KIRP 36557327 + 36557307 36557347 41 CGCGATGTCTTTGAGCCTGCCCGGGCCCAGTTTAACGGGAA CGCGATGTCTTTGAGCCTGCCTGGGCCCAGTTTAACGGGAA < 41bp 0.51182939190433 0.744687151011451 0.32359236 0.43965927 prediction 0.465715518214241 Functional Gain - ADPRHL2 ENSG00000116863 CDS Human protein_coding chr1:36557327 chr1:36557328 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_113978 0 0 0 0 1 ADPRHL2 chr1:36557426 5'GT 36557426 Upstream 99bp
chr12 132414487 132414487 1 + C G rs561744467 132414486 + 132414466 132414506 41 CCGGGAACGCGGAGCCGCCGCCCGCCGGAGCCGCATGCCCC CCGGGAACGCGGAGCCGCCGCGCGCCGGAGCCGCATGCCCC < 41bp 0.627075815627446 0.859924604227811 0.08667478 0.21191067 prediction 0.465697577200731 Functional Gain - PUS1 ENSG00000177192 CDS Human protein_coding chr12:132414486 chr12:132414487 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_113981 0 0 1 0 1 PUS1 chr12:132414452 3'AG 132414452 Downstream 36bp
chr1 78392497 78392497 1 + C A LUAD 78392496 + 78392476 78392516 41 GAGCGACAAAGACAAGAAAACCGAAAGAAGCAAGCTGAAGA GAGCGACAAAGACAAGAAAACAGAAAGAAGCAAGCTGAAGA < 41bp 0.480536381268893 0.732835550806183 0.26003736 0.3424014 prediction 0.465671101612366 Functional Gain - NEXN ENSG00000162614 CDS Human protein_coding chr1:78392496 chr1:78392497 synonymous SNV . 0 22 hm5C_associated_SNPs_113987 0 0 0 0 2 NEXN chr1:78392401 3'AG 78392401 Downstream 97bp
chr1 78392497 78392497 1 + C A LUAD 78392496 + 78392476 78392516 41 GAGCGACAAAGACAAGAAAACCGAAAGAAGCAAGCTGAAGA GAGCGACAAAGACAAGAAAACAGAAAGAAGCAAGCTGAAGA < 41bp 0.480536381268893 0.732835550806183 0.26003736 0.3424014 prediction 0.465671101612366 Functional Gain - NEXN ENSG00000162614 CDS Human protein_coding chr1:78392496 chr1:78392497 synonymous SNV . 0 22 hm5C_associated_SNPs_113987 0 0 0 0 2 NEXN chr1:78392577 5'GT 78392577 Upstream 81bp
chr7 100187638 100187638 1 - G C rs115302684 100187639 - 100187619 100187659 41 TTTCCCCCTCTTCTCTTCAACCCCAAGCTCCGAGCCACAAG TTTCCCCCTCTTCTCTTCAACGCCAAGCTCCGAGCCACAAG < 41bp 0.406076066251065 0.732834214394692 0.068953514 0.54268205 prediction 0.465668428789383 Functional Gain - FBXO24 ENSG00000106336 CDS Human antisense chr7:100187639 chr7:100187638 synonymous SNV . 0 22 hm5C_associated_SNPs_113989 0 0 1 0 1 PCOLCE-AS1 chr7:100187705 3'AG 100187705 Downstream 68bp
chr2 119727764 119727764 1 + C A LUAD 119727760 + 119727740 119727780 41 GACACTCTGGCGGCTGAGGACAGCCCGTCCTTCTCCTTGCT GACACTCTGGCGGCTGAGGACAGCACGTCCTTCTCCTTGCT < 41bp 0.319623888072741 0.732829216975108 0.1500723 0.23083901 prediction 0.465658433950217 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119727760 chr2:119727764 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_113992 0 0 0 0 1 MARCO chr2:119727690 3'AG 119727690 Downstream 75bp
chr10 94834751 94834751 1 + T C UCEC 94834749 + 94834729 94834769 41 ACGGGGACTCCGAGCAGCAGCTTGTGGAGGCCTTCGAGGAA ACGGGGACTCCGAGCAGCAGCTCGTGGAGGCCTTCGAGGAA < 41bp 0.602975065093634 0.835803806024239 0.23740232 0.6317336 prediction 0.465657481861211 Functional Gain - CYP26A1 ENSG00000095596 CDS Human protein_coding chr10:94834749 chr10:94834751 synonymous SNV . 0 23 hm5C_associated_SNPs_113993 0 0 0 0 1 CYP26A1 chr10:94834826 5'GT 94834826 Upstream 76bp
chr9 132396539 132396539 1 + C T SKCM 132396538 + 132396518 132396558 41 TTGTGGGCTCCAGGACTTCACCCCGGAGCCGGACTCTTACG TTGTGGGCTCCAGGACTTCACTCCGGAGCCGGACTCTTACG < 41bp 0.567828986156482 0.800648590944241 0.1669746 0.18254948 prediction 0.465639209575517 Functional Gain - NTMT1 ENSG00000148335 CDS Human protein_coding chr9:132396538 chr9:132396539 synonymous SNV . 0 22 hm5C_associated_SNPs_113995 0 0 1 0 2 NTMT1 chr9:132396500 3'AG 132396500 Downstream 40bp
chr9 132396539 132396539 1 + C T SKCM 132396538 + 132396518 132396558 41 TTGTGGGCTCCAGGACTTCACCCCGGAGCCGGACTCTTACG TTGTGGGCTCCAGGACTTCACTCCGGAGCCGGACTCTTACG < 41bp 0.567828986156482 0.800648590944241 0.1669746 0.18254948 prediction 0.465639209575517 Functional Gain - NTMT1 ENSG00000148335 CDS Human protein_coding chr9:132396538 chr9:132396539 synonymous SNV . 0 22 hm5C_associated_SNPs_113995 0 0 1 0 2 NTMT1 chr9:132396585 5'GT 132396585 Upstream 47bp
chr1 55452036 55452036 1 + A G rs56889206 55452033 + 55452013 55452053 41 TGGTCCGTCAAGGCCAGCATCCCAGGGCCACCTCGATGGGA TGGTCCGTCAAGGCCAGCATCCCGGGGCCACCTCGATGGGA < 41bp 0.473557285771266 0.732818710868999 0.51273483 0.93477666 prediction 0.465637421737999 Functional Gain - TMEM61 ENSG00000143001 CDS Human protein_coding chr1:55452033 chr1:55452036 synonymous SNV . 0 24 hm5C_associated_SNPs_113996 0 0 0 0 1 TMEM61 chr1:55452119 5'GT 55452119 Upstream 84bp
chr1 24859587 24859587 1 + C A rs34116411 24859583 + 24859563 24859603 41 CTCCCTGCAGGTGCAGATGTCCGGCGAAGTGCGGGACAAGT CTCCCTGCAGGTGCAGATGTCCGGAGAAGTGCGGGACAAGT < 41bp 0.341330367767279 0.73281491672006 0.91035384 0.9133271 prediction 0.465629833440119 Functional Gain - RCAN3 ENSG00000117602 CDS Human protein_coding chr1:24859583 chr1:24859587 synonymous SNV . 0 25 hm5C_associated_SNPs_113997 0 0 0 0 1 RCAN3 chr1:24859573 3'AG 24859573 Downstream 15bp
chr19 17534351 17534351 1 + C G rs113697726 17534350 + 17534330 17534370 41 GGTGCAAGAAGGCCAAGGCCCCGAGGCCAGTGCCCAAGCCC GGTGCAAGAAGGCCAAGGCCCGGAGGCCAGTGCCCAAGCCC < 41bp 0.644218007025757 0.87703117751894 0.34237027 0.9013258 prediction 0.465626340986364 Functional Gain - MVB12A ENSG00000141971 CDS Human protein_coding chr19:17534350 chr19:17534351 nonsynonymous SNV 0.172 4 22 hm5C_associated_SNPs_113998 0 0 0 0 2 MVB12A chr19:17534307 3'AG 17534307 Downstream 45bp
chr19 17534351 17534351 1 + C G rs113697726 17534350 + 17534330 17534370 41 GGTGCAAGAAGGCCAAGGCCCCGAGGCCAGTGCCCAAGCCC GGTGCAAGAAGGCCAAGGCCCGGAGGCCAGTGCCCAAGCCC < 41bp 0.644218007025757 0.87703117751894 0.34237027 0.9013258 prediction 0.465626340986364 Functional Gain - MVB12A ENSG00000141971 CDS Human protein_coding chr19:17534350 chr19:17534351 nonsynonymous SNV 0.172 4 22 hm5C_associated_SNPs_113998 0 0 0 0 2 MVB12A chr19:17534426 5'GT 17534426 Upstream 76bp
chr5 5190120 5190120 1 + T A LUSC 5190116 + 5190096 5190136 41 ATAAGTCACCACGCAGACCACACCTTAAGTAGCTTCTGCCA ATAAGTCACCACGCAGACCACACCATAAGTAGCTTCTGCCA < 41bp 0.380812826896578 0.732808496549479 0.022054493 0.06192711 prediction 0.465616993098957 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5190116 chr5:5190120 nonsynonymous SNV 0.688 4 25 hm5C_associated_SNPs_113999 0 0 0 0 1 ADAMTS16 chr5:5190084 3'AG 5190084 Downstream 37bp
chr5 139739974 139739974 1 + C G rs80326836 139739973 + 139739953 139739993 41 GAGCAAGGAACTGGGAGTACCCAAAGACCCTCTGCTCTTCA GAGCAAGGAACTGGGAGTACCGAAAGACCCTCTGCTCTTCA < 41bp 0.416394801847844 0.73280714170155 0.41875023 0.4085505 prediction 0.465614283403101 Functional Gain - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139739973 chr5:139739974 synonymous SNV . 0 22 hm5C_associated_SNPs_114000 0 0 0 0 1 SLC4A9 chr5:139740051 5'GT 139740051 Upstream 78bp
chr11 34152954 34152954 1 + C T SKCM 34152953 + 34152933 34152973 41 ACACTGTATGAGGTTTCCCTCCAGGAGTCAATCCGATACGC ACACTGTATGAGGTTTCCCTCTAGGAGTCAATCCGATACGC < 41bp 0.556718894620592 0.789525364685486 0.57865953 0.4259013 prediction 0.465612940129788 Functional Gain - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34152953 chr11:34152954 stopgain 0.979 1 22 hm5C_associated_SNPs_114001 0 0 1 0 1 NAT10 chr11:34152928 3'AG 34152928 Downstream 27bp
chr6 50682897 50682897 1 + C T SKCM 50682896 + 50682876 50682916 41 TCTGGAGTCAGTAGCCAATTCCACTGTCGCCTATTCCTCCT TCTGGAGTCAGTAGCCAATTCTACTGTCGCCTATTCCTCCT < 41bp 0.486669259496474 0.732795043970984 0.38356563 0.22513202 prediction 0.465590087941969 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50682896 chr6:50682897 synonymous SNV . 0 22 hm5C_associated_SNPs_114007 0 0 0 0 1 TFAP2D chr6:50682829 3'AG 50682829 Downstream 69bp
chr2 29165216 29165216 1 + T C UCEC 29165214 + 29165194 29165234 41 AGACAAAGGGAGCAACTTCCCCTGGACAGAAGGCAAAGTTG AGACAAAGGGAGCAACTTCCCCCGGACAGAAGGCAAAGTTG < 41bp 0.459633817927751 0.732788869808373 0.044115603 0.046497494 prediction 0.465577739616747 Functional Gain - WDR43 ENSG00000163811 CDS Human protein_coding chr2:29165214 chr2:29165216 synonymous SNV . 0 23 hm5C_associated_SNPs_114008 0 0 1 0 2 WDR43 chr2:29165178 3'AG 29165178 Downstream 39bp
chr2 29165216 29165216 1 + T C UCEC 29165214 + 29165194 29165234 41 AGACAAAGGGAGCAACTTCCCCTGGACAGAAGGCAAAGTTG AGACAAAGGGAGCAACTTCCCCCGGACAGAAGGCAAAGTTG < 41bp 0.459633817927751 0.732788869808373 0.044115603 0.046497494 prediction 0.465577739616747 Functional Gain - WDR43 ENSG00000163811 CDS Human protein_coding chr2:29165214 chr2:29165216 synonymous SNV . 0 23 hm5C_associated_SNPs_114008 0 0 1 0 2 WDR43 chr2:29165247 5'GT 29165247 Upstream 32bp
chr5 6751226 6751226 1 + C T UCEC 6751225 + 6751205 6751245 41 AGCGCCAGCTCCTCTCATGGCCGGCTTACCCACCGCCTTGC AGCGCCAGCTCCTCTCATGGCTGGCTTACCCACCGCCTTGC < 41bp 0.553330833652061 0.78611804978938 0.42157587 0.3857935 prediction 0.465574432274639 Functional Gain - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6751225 chr5:6751226 synonymous SNV . 0 22 hm5C_associated_SNPs_114010 0 0 1 0 2 PAPD7 chr5:6751152 3'AG 6751152 Downstream 75bp
chr5 6751226 6751226 1 + C T UCEC 6751225 + 6751205 6751245 41 AGCGCCAGCTCCTCTCATGGCCGGCTTACCCACCGCCTTGC AGCGCCAGCTCCTCTCATGGCTGGCTTACCCACCGCCTTGC < 41bp 0.553330833652061 0.78611804978938 0.42157587 0.3857935 prediction 0.465574432274639 Functional Gain - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6751225 chr5:6751226 synonymous SNV . 0 22 hm5C_associated_SNPs_114010 0 0 1 0 2 PAPD7 chr5:6751310 5'GT 6751310 Upstream 85bp
chr16 67913012 67913012 1 + C A BRCA 67913011 + 67912991 67913031 41 GCACACTGAGGTGCTGCCTGCCGAAGAGGAAAATGACAGCC GCACACTGAGGTGCTGCCTGCAGAAGAGGAAAATGACAGCC < 41bp 0.469807350962158 0.732780242821157 0.17859909 0.29976144 prediction 0.465560485642313 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67913011 chr16:67913012 synonymous SNV . 0 22 hm5C_associated_SNPs_114014 0 0 1 0 1 EDC4 chr16:67913040 5'GT 67913040 Upstream 29bp
chr19 49079245 49079245 1 + C T SKCM 49079244 + 49079224 49079264 41 GGTACAAGGGCGTCCCCTTCCCCGTCGGCCTGTACTCGCTC GGTACAAGGGCGTCCCCTTCCTCGTCGGCCTGTACTCGCTC < 41bp 0.52565690042233 0.758428321550431 0.14701214 0.25555503 prediction 0.465542842256202 Functional Gain - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49079244 chr19:49079245 nonsynonymous SNV 0.836 4 22 hm5C_associated_SNPs_114016 0 0 0 0 2 SULT2B1 chr19:49079198 3'AG 49079198 Downstream 48bp
chr19 49079245 49079245 1 + C T SKCM 49079244 + 49079224 49079264 41 GGTACAAGGGCGTCCCCTTCCCCGTCGGCCTGTACTCGCTC GGTACAAGGGCGTCCCCTTCCTCGTCGGCCTGTACTCGCTC < 41bp 0.52565690042233 0.758428321550431 0.14701214 0.25555503 prediction 0.465542842256202 Functional Gain - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49079244 chr19:49079245 nonsynonymous SNV 0.836 4 22 hm5C_associated_SNPs_114016 0 0 0 0 2 SULT2B1 chr19:49079340 5'GT 49079340 Upstream 96bp
chr11 94040371 94040371 1 + C T CESC 94040370 + 94040350 94040390 41 GAGAGCGAGTTGTGAATGTGCCGCTGTGCCAGGAGGACTGT GAGAGCGAGTTGTGAATGTGCTGCTGTGCCAGGAGGACTGT < 41bp 0.494420513702142 0.732759968535892 0.09839484 0.094507694 prediction 0.465519937071784 Functional Gain - IZUMO1R ENSG00000183560 CDS Human protein_coding chr11:94040370 chr11:94040371 nonsynonymous SNV 0.136 4 22 hm5C_associated_SNPs_114017 0 0 0 0 1 IZUMO1R chr11:94040331 3'AG 94040331 Downstream 41bp
chr22 42271656 42271656 1 + A G SKCM 42271653 + 42271633 42271673 41 ATGTCCCCCCCAGCCTCTGACTCAGGGTCCCAGGCTGGCTT ATGTCCCCCCCAGCCTCTGACTCGGGGTCCCAGGCTGGCTT < 41bp 0.4894235834098 0.732758611210281 0.08766729 0.46079838 prediction 0.465517222420562 Functional Gain - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42271653 chr22:42271656 synonymous SNV . 0 24 hm5C_associated_SNPs_114018 0 0 1 0 1 SREBF2 chr22:42271728 5'GT 42271728 Upstream 73bp
chr5 133451720 133451720 1 + C T UCEC 133451719 + 133451699 133451739 41 AGCACCCCCAGCCGCAGCCCCCGCTGGTAAGTGGACCCCGC AGCACCCCCAGCCGCAGCCCCTGCTGGTAAGTGGACCCCGC < 41bp 0.486891213764345 0.732755093532019 0.15295422 0.21756297 prediction 0.465510187064039 Functional Gain - TCF7 ENSG00000081059 CDS Human protein_coding chr5:133451719 chr5:133451720 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_114021 0 0 0 0 2 TCF7 chr5:133451724 5'GT 133451724 Upstream 5bp
chr5 133451720 133451720 1 + C T UCEC 133451719 + 133451699 133451739 41 AGCACCCCCAGCCGCAGCCCCCGCTGGTAAGTGGACCCCGC AGCACCCCCAGCCGCAGCCCCTGCTGGTAAGTGGACCCCGC < 41bp 0.486891213764345 0.732755093532019 0.15295422 0.21756297 prediction 0.465510187064039 Functional Gain - TCF7 ENSG00000081059 CDS Human protein_coding chr5:133451719 chr5:133451720 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_114021 0 0 0 0 2 TCF7 chr5:133451777 5'GT 133451777 Upstream 58bp
chr5 167841384 167841384 1 + C A SARC 167841380 + 167841360 167841400 41 AACCTGAAGATCCAGCTGGCCAAGCTTGACAGTGAGGCCTG AACCTGAAGATCCAGCTGGCCAAGATTGACAGTGAGGCCTG < 41bp 0.322670029825814 0.732750954009373 0.25336182 0.24761486 prediction 0.465501908018747 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167841380 chr5:167841384 nonsynonymous SNV 0.990 1 25 hm5C_associated_SNPs_114023 0 0 0 0 1 WWC1 chr5:167841353 3'AG 167841353 Downstream 32bp
chr17 61615533 61615533 1 + C G HNSC 61615532 + 61615512 61615552 41 CTGCGTGTCAAGGAGTTCATCCGCTTCCACCAGATCCCCAA CTGCGTGTCAAGGAGTTCATCGGCTTCCACCAGATCCCCAA < 41bp 0.404512928597457 0.732747456430201 0.013306975 0.1631372 prediction 0.465494912860402 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61615532 chr17:61615533 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_114024 0 0 0 0 1 KCNH6 chr17:61615625 5'GT 61615625 Upstream 93bp
chr17 1639458 1639458 1 + A G rs11549259 1639455 + 1639435 1639475 41 ATGGTGCTCCTGGACACCCGCACAGGCCTGGTTCTGCGAGG ATGGTGCTCCTGGACACCCGCACGGGCCTGGTTCTGCGAGG < 41bp 0.53232284226081 0.765056930850444 0.2273095 0.6867219 prediction 0.465468177179267 Functional Gain - WDR81 ENSG00000167716 CDS Human protein_coding chr17:1639455 chr17:1639458 synonymous SNV . 0 24 hm5C_associated_SNPs_114027 1 0 0 0 1 WDR81 chr17:1639512 5'GT 1639512 Upstream 55bp
chr14 64916293 64916293 1 + A G LIHC 64916290 + 64916270 64916310 41 TAGCCCTGGCTCAGGCCGTCCAGAGAGCAGCACAAGCACCC TAGCCCTGGCTCAGGCCGTCCAGGGAGCAGCACAAGCACCC < 41bp 0.527087859313765 0.759820013457359 0.3204342 0.6536444 prediction 0.465464308287188 Functional Gain - MTHFD1;ZBTB25 ENSG00000089775;ENSG00000100714 CDS Human other chr14:64916290 chr14:64916293 nonsynonymous SNV 0.955 2 24 hm5C_associated_SNPs_114028 0 0 1 0 1 MTHFD1;ZBTB25 chr14:64916340 5'GT 64916340 Upstream 48bp
chrX 129505549 129505549 1 + T C UCEC 129505547 + 129505527 129505567 41 CTTTCCTGCAGATGTGGAAACATGAGGGCTTTTTTGCACTC CTTTCCTGCAGATGTGGAAACACGAGGGCTTTTTTGCACTC < 41bp 0.587093891864759 0.819821195834731 0.34470955 0.36070243 prediction 0.465454607939943 Functional Gain - SLC25A14 ENSG00000102078 CDS Human protein_coding chrX:129505547 chrX:129505549 synonymous SNV . 0 23 hm5C_associated_SNPs_114029 0 0 1 0 2 SLC25A14 chrX:129505538 3'AG 129505538 Downstream 12bp
chrX 129505549 129505549 1 + T C UCEC 129505547 + 129505527 129505567 41 CTTTCCTGCAGATGTGGAAACATGAGGGCTTTTTTGCACTC CTTTCCTGCAGATGTGGAAACACGAGGGCTTTTTTGCACTC < 41bp 0.587093891864759 0.819821195834731 0.34470955 0.36070243 prediction 0.465454607939943 Functional Gain - SLC25A14 ENSG00000102078 CDS Human protein_coding chrX:129505547 chrX:129505549 synonymous SNV . 0 23 hm5C_associated_SNPs_114029 0 0 1 0 2 SLC25A14 chrX:129505618 5'GT 129505618 Upstream 70bp
chr3 111849344 111849344 1 - G T GBM 111849348 - 111849328 111849368 41 AGTTTCAGGCGGCAGCAGAACACTCAAGAGATGCCTTGGAA AGTTTCAGGCGGCAGCAGAACACTAAAGAGATGCCTTGGAA < 41bp 0.310146917749977 0.73272678794853 0.18503883 0.08559632 prediction 0.46545357589706 Functional Gain - GCSAM ENSG00000174500 CDS Human protein_coding chr3:111849348 chr3:111849344 nonsynonymous SNV 0.076 1 25 hm5C_associated_SNPs_114030 0 0 0 0 3 GCSAM chr3:111849292 5'GT 111849292 Upstream 53bp
chr3 111849344 111849344 1 - G T GBM 111849348 - 111849328 111849368 41 AGTTTCAGGCGGCAGCAGAACACTCAAGAGATGCCTTGGAA AGTTTCAGGCGGCAGCAGAACACTAAAGAGATGCCTTGGAA < 41bp 0.310146917749977 0.73272678794853 0.18503883 0.08559632 prediction 0.46545357589706 Functional Gain - GCSAM ENSG00000174500 CDS Human protein_coding chr3:111849348 chr3:111849344 nonsynonymous SNV 0.076 1 25 hm5C_associated_SNPs_114030 0 0 0 0 3 GCSAM chr3:111849360 3'AG 111849360 Downstream 17bp
chr3 111849344 111849344 1 - G T GBM 111849348 - 111849328 111849368 41 AGTTTCAGGCGGCAGCAGAACACTCAAGAGATGCCTTGGAA AGTTTCAGGCGGCAGCAGAACACTAAAGAGATGCCTTGGAA < 41bp 0.310146917749977 0.73272678794853 0.18503883 0.08559632 prediction 0.46545357589706 Functional Gain - GCSAM ENSG00000174500 CDS Human protein_coding chr3:111849348 chr3:111849344 nonsynonymous SNV 0.076 1 25 hm5C_associated_SNPs_114030 0 0 0 0 3 GCSAM chr3:111849366 3'AG 111849366 Downstream 23bp
chr3 196296170 196296170 1 + C A UCEC 196296169 + 196296149 196296189 41 CAACCTGCCCAGCTACAAGGCCAAGGTGAGAGAGCCCCGGG CAACCTGCCCAGCTACAAGGCAAAGGTGAGAGAGCCCCGGG < 41bp 0.558182738696671 0.790906890472661 0.3124144 0.25283796 prediction 0.465448303551981 Functional Gain - FBXO45 ENSG00000174013 CDS Human protein_coding chr3:196296169 chr3:196296170 synonymous SNV . 0 22 hm5C_associated_SNPs_114031 0 0 0 0 1 FBXO45 chr3:196296173 5'GT 196296173 Upstream 4bp
chr1 160322763 160322763 1 + A G rs2296270 160322760 + 160322740 160322780 41 GTGCAGTTAGAGAATGTTGACTCATTTGTGGAGCTGGGACA GTGCAGTTAGAGAATGTTGACTCGTTTGTGGAGCTGGGACA < 41bp 0.508827596137842 0.741551115230839 0.10645059 0.1472789 prediction 0.465447038185994 Functional Gain - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160322760 chr1:160322763 synonymous SNV . 0 24 hm5C_associated_SNPs_114034 0 0 1 0 2 NCSTN chr1:160322677 3'AG 160322677 Downstream 87bp
chr1 160322763 160322763 1 + A G rs2296270 160322760 + 160322740 160322780 41 GTGCAGTTAGAGAATGTTGACTCATTTGTGGAGCTGGGACA GTGCAGTTAGAGAATGTTGACTCGTTTGTGGAGCTGGGACA < 41bp 0.508827596137842 0.741551115230839 0.10645059 0.1472789 prediction 0.465447038185994 Functional Gain - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160322760 chr1:160322763 synonymous SNV . 0 24 hm5C_associated_SNPs_114034 0 0 1 0 2 NCSTN chr1:160322781 5'GT 160322781 Upstream 19bp
chr7 5330456 5330456 1 + T C BLCA 5330454 + 5330434 5330474 41 TTCCTGCTGCCATACAACAGCTTCATCACGGACGTGGACTA TTCCTGCTGCCATACAACAGCTCCATCACGGACGTGGACTA < 41bp 0.437476247830578 0.732720339995477 0.02496308 0.5684006 prediction 0.465440679990955 Functional Gain - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5330454 chr7:5330456 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_114037 0 0 0 0 2 SLC29A4 chr7:5330363 3'AG 5330363 Downstream 94bp
chr7 5330456 5330456 1 + T C BLCA 5330454 + 5330434 5330474 41 TTCCTGCTGCCATACAACAGCTTCATCACGGACGTGGACTA TTCCTGCTGCCATACAACAGCTCCATCACGGACGTGGACTA < 41bp 0.437476247830578 0.732720339995477 0.02496308 0.5684006 prediction 0.465440679990955 Functional Gain - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5330454 chr7:5330456 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_114037 0 0 0 0 2 SLC29A4 chr7:5330494 5'GT 5330494 Upstream 39bp
chr6 44413592 44413592 1 + C T SKCM 44413591 + 44413571 44413611 41 ACATGAAGATTCTGCTATTCCCCGGAGGCTAGAGGTAACGT ACATGAAGATTCTGCTATTCCTCGGAGGCTAGAGGTAACGT < 41bp 0.481663681398253 0.732717793115488 0.026281953 0.05056694 prediction 0.465435586230977 Functional Gain - CDC5L ENSG00000096401 CDS Human protein_coding chr6:44413591 chr6:44413592 synonymous SNV . 0 22 hm5C_associated_SNPs_114039 0 0 1 0 1 CDC5L chr6:44413604 5'GT 44413604 Upstream 13bp
chr1 1132563 1132563 1 + C A UCEC 1132562 + 1132542 1132582 41 CCAGGTGTGGTCATCGAGACCCTGGGTGAGCCTCCAAGCCC CCAGGTGTGGTCATCGAGACCATGGGTGAGCCTCCAAGCCC < 41bp 0.565158698049627 0.797873213076892 0.14718294 0.23870838 prediction 0.46542903005453 Functional Gain - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1132562 chr1:1132563 nonsynonymous SNV 0.961 3 22 hm5C_associated_SNPs_114040 0 0 0 0 2 TTLL10 chr1:1132473 3'AG 1132473 Downstream 91bp
chr1 1132563 1132563 1 + C A UCEC 1132562 + 1132542 1132582 41 CCAGGTGTGGTCATCGAGACCCTGGGTGAGCCTCCAAGCCC CCAGGTGTGGTCATCGAGACCATGGGTGAGCCTCCAAGCCC < 41bp 0.565158698049627 0.797873213076892 0.14718294 0.23870838 prediction 0.46542903005453 Functional Gain - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1132562 chr1:1132563 nonsynonymous SNV 0.961 3 22 hm5C_associated_SNPs_114040 0 0 0 0 2 TTLL10 chr1:1132566 5'GT 1132566 Upstream 4bp
chr17 16701644 16701644 1 + T G rs114148226 16701642 + 16701622 16701662 41 TTTCCTCGGGAAAGTTTTGACCTGAGTGCTTTTTTGGTACC TTTCCTCGGGAAAGTTTTGACCGGAGTGCTTTTTTGGTACC < 41bp 0.391017467814529 0.73271396677227 0.25842524 0.890452 prediction 0.465427933544539 Functional Gain - USP32P1 ENSG00000188933;ENSG00000272815 ncRNA_exonic Human other chr17:16701642 chr17:16701644 . . 0 23 hm5C_associated_SNPs_114043 0 0 0 0 1 USP32P1 chr17:16701556 3'AG 16701556 Downstream 89bp
chr8 75928886 75928886 1 + C T OV 75928885 + 75928865 75928905 41 CAAGTCCATGACACCCATGTCCGGACAAGATCAGATGATAG CAAGTCCATGACACCCATGTCTGGACAAGATCAGATGATAG < 41bp 0.55339729550861 0.786106440918863 0.2931292 0.21737915 prediction 0.465418290820506 Functional Gain - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75928885 chr8:75928886 nonsynonymous SNV 0.169 1 22 hm5C_associated_SNPs_114046 0 0 1 0 2 CRISPLD1 chr8:75928800 3'AG 75928800 Downstream 87bp
chr8 75928886 75928886 1 + C T OV 75928885 + 75928865 75928905 41 CAAGTCCATGACACCCATGTCCGGACAAGATCAGATGATAG CAAGTCCATGACACCCATGTCTGGACAAGATCAGATGATAG < 41bp 0.55339729550861 0.786106440918863 0.2931292 0.21737915 prediction 0.465418290820506 Functional Gain - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75928885 chr8:75928886 nonsynonymous SNV 0.169 1 22 hm5C_associated_SNPs_114046 0 0 1 0 2 CRISPLD1 chr8:75928940 5'GT 75928940 Upstream 55bp
chr19 50358105 50358105 1 + C T LUSC 50358104 + 50358084 50358124 41 ATAGGGAGACCGACCAGTGGCCGCAGAAGCTGATCATGCAG ATAGGGAGACCGACCAGTGGCTGCAGAAGCTGATCATGCAG < 41bp 0.548992019274394 0.781699783794183 0.24850264 0.7163134 prediction 0.465415529039577 Functional Gain - PTOV1 ENSG00000104960 CDS Human protein_coding chr19:50358104 chr19:50358105 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_114047 0 0 1 0 2 PTOV1 chr19:50358088 3'AG 50358088 Downstream 18bp
chr19 50358105 50358105 1 + C T LUSC 50358104 + 50358084 50358124 41 ATAGGGAGACCGACCAGTGGCCGCAGAAGCTGATCATGCAG ATAGGGAGACCGACCAGTGGCTGCAGAAGCTGATCATGCAG < 41bp 0.548992019274394 0.781699783794183 0.24850264 0.7163134 prediction 0.465415529039577 Functional Gain - PTOV1 ENSG00000104960 CDS Human protein_coding chr19:50358104 chr19:50358105 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_114047 0 0 1 0 2 PTOV1 chr19:50358145 5'GT 50358145 Upstream 41bp
chr3 129268139 129268139 1 + T C UCEC 129268137 + 129268117 129268157 41 CCCCCCAAGCCAGACAAGGCCATGCGGGCACCTTCCAGTGC CCCCCCAAGCCAGACAAGGCCACGCGGGCACCTTCCAGTGC < 41bp 0.540128168355688 0.772830739985262 0.3061831 0.42456555 prediction 0.465405143259148 Functional Gain - H1FOO ENSG00000178804 CDS Human protein_coding chr3:129268137 chr3:129268139 nonsynonymous SNV 0.017 0 23 hm5C_associated_SNPs_114048 0 0 0 0 1 H1FOO chr3:129268207 5'GT 129268207 Upstream 69bp
chr19 7528777 7528777 1 + C T rs79442325 7528776 + 7528756 7528796 41 GGCGGAAGACGGAGGCAGCTCCACAGGCCCGCCCAGGAGGG GGCGGAAGACGGAGGCAGCTCTACAGGCCCGCCCAGGAGGG < 41bp 0.569192570548427 0.801894604468208 0.8984234 0.9245806 prediction 0.465404067839562 Functional Gain - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7528776 chr19:7528777 synonymous SNV . 0 22 hm5C_associated_SNPs_114050 0 0 0 0 1 ARHGEF18 chr19:7528704 3'AG 7528704 Downstream 74bp
chr1 24859642 24859642 1 + A G SKCM 24859639 + 24859619 24859659 41 CCCAGCCTGTCAAGCAGTTCCTCATCTCCCCTCCAGCCTCT CCCAGCCTGTCAAGCAGTTCCTCGTCTCCCCTCCAGCCTCT < 41bp 0.521762697532394 0.754462054176729 0.013006449 0.005721867 prediction 0.465398713288669 Functional Gain - RCAN3 ENSG00000117602 CDS Human protein_coding chr1:24859639 chr1:24859642 nonsynonymous SNV 0.990 2 24 hm5C_associated_SNPs_114051 0 0 1 0 2 RCAN3 chr1:24859573 3'AG 24859573 Downstream 70bp
chr1 24859642 24859642 1 + A G SKCM 24859639 + 24859619 24859659 41 CCCAGCCTGTCAAGCAGTTCCTCATCTCCCCTCCAGCCTCT CCCAGCCTGTCAAGCAGTTCCTCGTCTCCCCTCCAGCCTCT < 41bp 0.521762697532394 0.754462054176729 0.013006449 0.005721867 prediction 0.465398713288669 Functional Gain - RCAN3 ENSG00000117602 CDS Human protein_coding chr1:24859639 chr1:24859642 nonsynonymous SNV 0.990 2 24 hm5C_associated_SNPs_114051 0 0 1 0 2 RCAN3 chr1:24859603 3'AG 24859603 Downstream 40bp
chr7 99947441 99947441 1 + A G rs60920305 99947438 + 99947418 99947458 41 GCAGAGGCGGATTTCCCTGACTGAAGACCATGTTGCAGGCC GCAGAGGCGGATTTCCCTGACTGGAGACCATGTTGCAGGCC < 41bp 0.506336903471939 0.739027388012759 0.22729799 0.28449014 prediction 0.465380969081639 Functional Gain - STAG3L5P-PVRIG2P-PILRB ENSG00000242294;ENSG00000272752 ncRNA_exonic Human other chr7:99947438 chr7:99947441 . . 0 24 hm5C_associated_SNPs_114052 0 0 1 0 2 STAG3L5P-PVRIG2P-PILRB chr7:99947354 3'AG 99947354 Downstream 88bp
chr7 99947441 99947441 1 + A G rs60920305 99947438 + 99947418 99947458 41 GCAGAGGCGGATTTCCCTGACTGAAGACCATGTTGCAGGCC GCAGAGGCGGATTTCCCTGACTGGAGACCATGTTGCAGGCC < 41bp 0.506336903471939 0.739027388012759 0.22729799 0.28449014 prediction 0.465380969081639 Functional Gain - STAG3L5P-PVRIG2P-PILRB ENSG00000242294;ENSG00000272752 ncRNA_exonic Human other chr7:99947438 chr7:99947441 . . 0 24 hm5C_associated_SNPs_114052 0 0 1 0 2 STAG3L5P-PVRIG2P-PILRB chr7:99947510 5'GT 99947510 Upstream 70bp
chr9 133491847 133491847 1 + C A UCEC 133491846 + 133491826 133491866 41 AATCCAGGAGATTCTCATTCCCGCATCTAAAGTGGGTCTGG AATCCAGGAGATTCTCATTCCAGCATCTAAAGTGGGTCTGG < 41bp 0.567114467455928 0.799803679441608 0.11593783 0.16636208 prediction 0.46537842397136 Functional Gain - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133491846 chr9:133491847 synonymous SNV . 0 22 hm5C_associated_SNPs_114053 0 0 1 0 1 FUBP3 chr9:133491904 5'GT 133491904 Upstream 58bp
chr1 205030382 205030382 1 + C A LUAD 205030381 + 205030361 205030401 41 CTCTCCTGCCAGCCCTGTCCCCCGGATCAAGTGGCGCAAAG CTCTCCTGCCAGCCCTGTCCCACGGATCAAGTGGCGCAAAG < 41bp 0.473925596941302 0.732687114897605 0.5854911 0.6859865 prediction 0.465374229795211 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205030381 chr1:205030382 synonymous SNV . 0 22 hm5C_associated_SNPs_114055 0 0 0 0 1 CNTN2 chr1:205030373 3'AG 205030373 Downstream 10bp
chr1 1222332 1222332 1 + C G rs139397015 1222331 + 1222311 1222351 41 AGGCTGAGCCACTCGGGCAGCCGGGTCAGAGTGGGGTTCAG AGGCTGAGCCACTCGGGCAGCGGGGTCAGAGTGGGGTTCAG < 41bp 0.635886522947972 0.8685711875892 0.87164766 0.89910483 prediction 0.465369329282457 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1222331 chr1:1222332 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_114057 0 0 0 0 1 SCNN1D chr1:1222355 5'GT 1222355 Upstream 24bp
chr2 99193585 99193585 1 + A G LAML 99193582 + 99193562 99193602 41 CATGGCCCCGCAGGTCTTCACCCAGGCCCTGGAGTGCATGC CATGGCCCCGCAGGTCTTCACCCGGGCCCTGGAGTGCATGC < 41bp 0.517979374631734 0.750660231064612 0.5565166 0.90617764 prediction 0.465361712865756 Functional Gain - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99193582 chr2:99193585 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_114059 0 0 1 0 1 INPP4A chr2:99193606 5'GT 99193606 Upstream 22bp
chr6 35209007 35209007 1 + C T UCEC 35209006 + 35208986 35209026 41 CAGTGTACCTGCCCAGCAGGCCAGGGTCGGCTGCACTGGAA CAGTGTACCTGCCCAGCAGGCTAGGGTCGGCTGCACTGGAA < 41bp 0.536616375519183 0.769294389780003 0.89750826 0.8645959 prediction 0.46535602852164 Functional Gain - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35209006 chr6:35209007 stopgain 0.997 0 22 hm5C_associated_SNPs_114060 0 0 0 0 2 SCUBE3 chr6:35208918 3'AG 35208918 Downstream 90bp
chr6 35209007 35209007 1 + C T UCEC 35209006 + 35208986 35209026 41 CAGTGTACCTGCCCAGCAGGCCAGGGTCGGCTGCACTGGAA CAGTGTACCTGCCCAGCAGGCTAGGGTCGGCTGCACTGGAA < 41bp 0.536616375519183 0.769294389780003 0.89750826 0.8645959 prediction 0.46535602852164 Functional Gain - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35209006 chr6:35209007 stopgain 0.997 0 22 hm5C_associated_SNPs_114060 0 0 0 0 2 SCUBE3 chr6:35209043 5'GT 35209043 Upstream 37bp
chr12 85677430 85677430 1 + C A LUAD 85677429 + 85677409 85677449 41 ATGGACAACTGTAACAGTCTCCGAATGTCTCCCGTGAAAGG ATGGACAACTGTAACAGTCTCAGAATGTCTCCCGTGAAAGG < 41bp 0.571561723135523 0.804238334254757 0.43991202 0.8004968 prediction 0.465353222238469 Functional Gain - ALX1 ENSG00000180318 CDS Human protein_coding chr12:85677429 chr12:85677430 synonymous SNV . 0 22 hm5C_associated_SNPs_114061 0 0 1 0 1 ALX1 chr12:85677350 3'AG 85677350 Downstream 81bp
chr19 8486897 8486897 1 + C T LGG 8486896 + 8486876 8486916 41 TCATCCGTGCCTTGGACACACCGAGGTGAGTGGTGACTGCG TCATCCGTGCCTTGGACACACTGAGGTGAGTGGTGACTGCG < 41bp 0.496151612904803 0.732673835779534 0.37617013 0.2610129 prediction 0.465347671559067 Functional Gain - MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8486896 chr19:8486897 nonsynonymous SNV 0.123 0 22 hm5C_associated_SNPs_114062 0 0 0 0 1 MARCH2 chr19:8486900 5'GT 8486900 Upstream 4bp
chr7 142962100 142962100 1 + T C SKCM 142962098 + 142962078 142962118 41 CCCACAGGAAGTTTGTCTGCCATGCGTTTCCTCACCGCCGT CCCACAGGAAGTTTGTCTGCCACGCGTTTCCTCACCGCCGT < 41bp 0.470011444771453 0.732665833833725 0.26888192 0.24771339 prediction 0.46533166766745 Functional Gain - GSTK1 ENSG00000197448 CDS Human protein_coding chr7:142962098 chr7:142962100 nonsynonymous SNV 0.960 3 23 hm5C_associated_SNPs_114065 0 0 1 0 1 GSTK1 chr7:142962085 3'AG 142962085 Downstream 16bp
chr17 4058013 4058013 1 + C T UCEC 4058012 + 4057992 4058032 41 GAGAGGATGGGCTGCCCACCCCGGCACTGACCCAGGTAGAA GAGAGGATGGGCTGCCCACCCTGGCACTGACCCAGGTAGAA < 41bp 0.521720900172667 0.754381604727037 0.4710014 0.35107487 prediction 0.46532140910874 Functional Gain - CYB5D2 ENSG00000167740 CDS Human protein_coding chr17:4058012 chr17:4058013 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_114066 0 0 1 0 1 CYB5D2 chr17:4057968 3'AG 4057968 Downstream 46bp
chr19 5047517 5047517 1 + C T TGCT 5047516 + 5047496 5047536 41 CAGTGGAACATCGGGAGCCTCCGGACCATCCTGGACATGGT CAGTGGAACATCGGGAGCCTCTGGACCATCCTGGACATGGT < 41bp 0.560674898996679 0.793330709559135 0.4614764 0.40908834 prediction 0.465311621124911 Functional Gain - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5047516 chr19:5047517 nonsynonymous SNV 0.358 2 22 hm5C_associated_SNPs_114070 0 0 1 0 1 KDM4B chr19:5047487 3'AG 5047487 Downstream 31bp
chr11 66611449 66611449 1 + T C STAD 66611447 + 66611427 66611467 41 CCAGGCACATCCCTGCTCACCCTGATGGGCTTCAGGCTGGA CCAGGCACATCCCTGCTCACCCCGATGGGCTTCAGGCTGGA < 41bp 0.454289163585882 0.732650292829638 0.06173587 0.06069529 prediction 0.465300585659277 Functional Gain - RCE1 ENSG00000173653 CDS Human protein_coding chr11:66611447 chr11:66611449 stoploss 1.000 4 23 hm5C_associated_SNPs_114071 0 0 1 0 3 RCE1 chr11:66611427 3'AG 66611427 Downstream 23bp
chr11 66611449 66611449 1 + T C STAD 66611447 + 66611427 66611467 41 CCAGGCACATCCCTGCTCACCCTGATGGGCTTCAGGCTGGA CCAGGCACATCCCTGCTCACCCCGATGGGCTTCAGGCTGGA < 41bp 0.454289163585882 0.732650292829638 0.06173587 0.06069529 prediction 0.465300585659277 Functional Gain - RCE1 ENSG00000173653 CDS Human protein_coding chr11:66611447 chr11:66611449 stoploss 1.000 4 23 hm5C_associated_SNPs_114071 0 0 1 0 3 RCE1 chr11:66611431 3'AG 66611431 Downstream 19bp
chr11 66611449 66611449 1 + T C STAD 66611447 + 66611427 66611467 41 CCAGGCACATCCCTGCTCACCCTGATGGGCTTCAGGCTGGA CCAGGCACATCCCTGCTCACCCCGATGGGCTTCAGGCTGGA < 41bp 0.454289163585882 0.732650292829638 0.06173587 0.06069529 prediction 0.465300585659277 Functional Gain - RCE1 ENSG00000173653 CDS Human protein_coding chr11:66611447 chr11:66611449 stoploss 1.000 4 23 hm5C_associated_SNPs_114071 0 0 1 0 3 RCE1 chr11:66611510 5'GT 66611510 Upstream 62bp
chr5 153783767 153783767 1 + C G LUAD 153783763 + 153783743 153783783 41 AGGTCCCGGCCGGAGTCAGCCTGGCCCGGGTAAGGTGGTGG AGGTCCCGGCCGGAGTCAGCCTGGGCCGGGTAAGGTGGTGG < 41bp 0.439001487911829 0.732637134004961 0.22848669 0.44238696 prediction 0.465274268009922 Functional Gain - GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153783763 chr5:153783767 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_114076 0 0 0 0 1 GALNT10 chr5:153783771 5'GT 153783771 Upstream 5bp
chr3 51743354 51743354 1 + C T SKCM 51743353 + 51743333 51743373 41 CGTGGTGCTGATGGCTCACGCCACATCTGCCCCGACGGCTC CGTGGTGCTGATGGCTCACGCTACATCTGCCCCGACGGCTC < 41bp 0.54555798566488 0.778188427410609 0.07871029 0.2792402 prediction 0.465260883491459 Functional Gain - GRM2 ENSG00000164082 CDS Human protein_coding chr3:51743353 chr3:51743354 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_114078 0 0 0 0 1 GRM2 chr3:51743449 5'GT 51743449 Upstream 96bp
chr13 51921357 51921357 1 + C T UCEC 51921356 + 51921336 51921376 41 CCCCATGATGCACCAAACGACCGAGGTCAACTACGGTGAGC CCCCATGATGCACCAAACGACTGAGGTCAACTACGGTGAGC < 41bp 0.498922038252765 0.732616390890767 0.10028151 0.09065151 prediction 0.465232781781534 Functional Gain - SERPINE3 ENSG00000253309 CDS Human protein_coding chr13:51921356 chr13:51921357 synonymous SNV . 0 22 hm5C_associated_SNPs_114083 0 0 0 0 1 SERPINE3 chr13:51921370 5'GT 51921370 Upstream 14bp
chr18 43217106 43217106 1 + T G COAD 43217104 + 43217084 43217124 41 AACACTGGTAGAGCCTGTGTCTTCAGTGCCCAATATCACCT AACACTGGTAGAGCCTGTGTCTGCAGTGCCCAATATCACCT < 41bp 0.397278744733574 0.732614052361502 0.11963239 0.1935569 prediction 0.465228104723004 Functional Gain - SLC14A2 ENSG00000132874 CDS Human protein_coding chr18:43217104 chr18:43217106 nonsynonymous SNV 0.720 0 23 hm5C_associated_SNPs_114084 0 0 0 0 1 SLC14A2 chr18:43217147 5'GT 43217147 Upstream 42bp
chr20 34596371 34596371 1 + C T rs6060750 34596370 + 34596350 34596390 41 AGAACCTCAGGAGACACTCTCCCCAAGATGCTGGGCCCGAA AGAACCTCAGGAGACACTCTCTCCAAGATGCTGGGCCCGAA < 41bp 0.478491713594074 0.73261166821886 0.30723774 0.94548154 prediction 0.465223336437721 Functional Gain - CNBD2 ENSG00000149646 CDS Human protein_coding chr20:34596370 chr20:34596371 nonsynonymous SNV 0.040 0 22 hm5C_associated_SNPs_114086 0 0 0 0 1 CNBD2 chr20:34596396 5'GT 34596396 Upstream 26bp
chr14 50199444 50199444 1 + C A UCEC 50199443 + 50199423 50199463 41 ATTACTATTAATGGAGAAAGCCCAAAACATCGGTCATGGCA ATTACTATTAATGGAGAAAGCACAAAACATCGGTCATGGCA < 41bp 0.484796988739772 0.732607959977304 0.06615132 0.10457897 prediction 0.465215919954609 Functional Gain - KLHDC1 ENSG00000197776 CDS Human protein_coding chr14:50199443 chr14:50199444 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_114088 0 0 0 0 2 KLHDC1 chr14:50199422 3'AG 50199422 Downstream 23bp
chr14 50199444 50199444 1 + C A UCEC 50199443 + 50199423 50199463 41 ATTACTATTAATGGAGAAAGCCCAAAACATCGGTCATGGCA ATTACTATTAATGGAGAAAGCACAAAACATCGGTCATGGCA < 41bp 0.484796988739772 0.732607959977304 0.06615132 0.10457897 prediction 0.465215919954609 Functional Gain - KLHDC1 ENSG00000197776 CDS Human protein_coding chr14:50199443 chr14:50199444 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_114088 0 0 0 0 2 KLHDC1 chr14:50199534 5'GT 50199534 Upstream 91bp
chr5 81606007 81606007 1 + C T SKCM 81606006 + 81605986 81606026 41 AAGCTTGGTGATGCTGGAAACCCCAGAAGTCTTGCTATAAG AAGCTTGGTGATGCTGGAAACTCCAGAAGTCTTGCTATAAG < 41bp 0.583639106983677 0.816243877398763 0.20214194 0.9563415 prediction 0.465209540830172 Functional Gain - ATP6AP1L ENSG00000205464 CDS Human protein_coding chr5:81606006 chr5:81606007 nonsynonymous SNV 0.940 0 22 hm5C_associated_SNPs_114089 0 0 1 0 2 ATP6AP1L chr5:81605976 3'AG 81605976 Downstream 32bp
chr5 81606007 81606007 1 + C T SKCM 81606006 + 81605986 81606026 41 AAGCTTGGTGATGCTGGAAACCCCAGAAGTCTTGCTATAAG AAGCTTGGTGATGCTGGAAACTCCAGAAGTCTTGCTATAAG < 41bp 0.583639106983677 0.816243877398763 0.20214194 0.9563415 prediction 0.465209540830172 Functional Gain - ATP6AP1L ENSG00000205464 CDS Human protein_coding chr5:81606006 chr5:81606007 nonsynonymous SNV 0.940 0 22 hm5C_associated_SNPs_114089 0 0 1 0 2 ATP6AP1L chr5:81606026 5'GT 81606026 Upstream 20bp
chr10 134165236 134165236 1 + C A LGG 134165232 + 134165212 134165252 41 TCCGAGAGCTCCAGGAGAAGCAGGCTCTGATGGAGCAGCAG TCCGAGAGCTCCAGGAGAAGCAGGATCTGATGGAGCAGCAG < 41bp 0.689238358494683 0.92184244007099 0.84332013 0.77102304 prediction 0.465208163152615 Functional Gain - LRRC27 ENSG00000148814 CDS Human protein_coding chr10:134165232 chr10:134165236 nonsynonymous SNV 0.007 2 25 hm5C_associated_SNPs_114090 0 0 0 0 1 LRRC27 chr10:134165257 5'GT 134165257 Upstream 22bp
chr5 135391458 135391458 1 + C T SKCM 135391457 + 135391437 135391477 41 GATGGACCGGGTGCTGACCCCCCCAATGGGGACTGTCATGG GATGGACCGGGTGCTGACCCCTCCAATGGGGACTGTCATGG < 41bp 0.61126249794434 0.843864173964502 0.032322586 0.96592367 prediction 0.465203352040325 Functional Gain - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135391457 chr5:135391458 synonymous SNV . 0 22 hm5C_associated_SNPs_114091 0 0 1 0 2 TGFBI chr5:135391369 3'AG 135391369 Downstream 90bp
chr5 135391458 135391458 1 + C T SKCM 135391457 + 135391437 135391477 41 GATGGACCGGGTGCTGACCCCCCCAATGGGGACTGTCATGG GATGGACCGGGTGCTGACCCCTCCAATGGGGACTGTCATGG < 41bp 0.61126249794434 0.843864173964502 0.032322586 0.96592367 prediction 0.465203352040325 Functional Gain - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135391457 chr5:135391458 synonymous SNV . 0 22 hm5C_associated_SNPs_114091 0 0 1 0 2 TGFBI chr5:135391505 5'GT 135391505 Upstream 48bp
chr2 220366242 220366242 1 + T C STAD 220366240 + 220366220 220366260 41 TGCTCATTGGCTTCTACCAACCTGATGAGCCCCTCACCCAG TGCTCATTGGCTTCTACCAACCCGATGAGCCCCTCACCCAG < 41bp 0.593007815281772 0.825599057805019 0.26323158 0.3449505 prediction 0.465182485046494 Functional Gain - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220366240 chr2:220366242 synonymous SNV . 0 23 hm5C_associated_SNPs_114097 0 0 0 0 2 GMPPA chr2:220366198 3'AG 220366198 Downstream 45bp
chr2 220366242 220366242 1 + T C STAD 220366240 + 220366220 220366260 41 TGCTCATTGGCTTCTACCAACCTGATGAGCCCCTCACCCAG TGCTCATTGGCTTCTACCAACCCGATGAGCCCCTCACCCAG < 41bp 0.593007815281772 0.825599057805019 0.26323158 0.3449505 prediction 0.465182485046494 Functional Gain - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220366240 chr2:220366242 synonymous SNV . 0 23 hm5C_associated_SNPs_114097 0 0 0 0 2 GMPPA chr2:220366301 5'GT 220366301 Upstream 60bp
chr19 19335230 19335230 1 + C T GBM 19335229 + 19335209 19335249 41 TACGATGTGTATTGCTTTGCCCGGGAGCTGGGGGGTAAGTC TACGATGTGTATTGCTTTGCCTGGGAGCTGGGGGGTAAGTC < 41bp 0.506960255082336 0.739543783048356 0.91357845 0.8052889 prediction 0.465167055932039 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19335229 chr19:19335230 nonsynonymous SNV 0.987 3 22 hm5C_associated_SNPs_114100 0 0 0 0 1 NCAN chr19:19335242 5'GT 19335242 Upstream 13bp
chr5 149915370 149915370 1 + C T PRAD 149915369 + 149915349 149915389 41 TGGAAGCAGGTGTGGAGCATCCGCGTGACCAGCACGGAGGA TGGAAGCAGGTGTGGAGCATCTGCGTGACCAGCACGGAGGA < 41bp 0.567073500416137 0.799648706899512 0.5502982 0.36639848 prediction 0.465150412966751 Functional Gain - NDST1 ENSG00000070614 CDS Human protein_coding chr5:149915369 chr5:149915370 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_114102 0 0 1 0 1 NDST1 chr5:149915447 5'GT 149915447 Upstream 78bp
chr9 33246717 33246717 1 + T C COAD 33246715 + 33246695 33246735 41 ACGAATGAATGCCAGCTCTGCTTGGCCCGGATGTAAGTCTG ACGAATGAATGCCAGCTCTGCTCGGCCCGGATGTAAGTCTG < 41bp 0.572678017327562 0.805251027258871 0.04770848 0.113770485 prediction 0.465146019862617 Functional Gain - SPINK4 ENSG00000122711 CDS Human protein_coding chr9:33246715 chr9:33246717 nonsynonymous SNV 0.086 1 23 hm5C_associated_SNPs_114104 0 0 0 0 1 SPINK4 chr9:33246726 5'GT 33246726 Upstream 10bp
chr16 720920 720920 1 + C T COAD 720919 + 720899 720939 41 GCTTTGGGCACCCCCTGGCCCCGCAGGCCCTGGAGGACGTG GCTTTGGGCACCCCCTGGCCCTGCAGGCCCTGGAGGACGTG < 41bp 0.565250842257433 0.79782226631164 0.045164734 0.0653747 prediction 0.465142848108415 Functional Gain - RHOT2 ENSG00000140983 CDS Human protein_coding chr16:720919 chr16:720920 nonsynonymous SNV 0.724 3 22 hm5C_associated_SNPs_114105 0 0 1 0 1 RHOT2 chr16:721000 5'GT 721000 Upstream 81bp
chr7 141803165 141803165 1 + C T LUAD 141803164 + 141803144 141803184 41 ATCTGGGGAGTGGGCAGTGTCCCCGTTACCAGTGTCAGCAT ATCTGGGGAGTGGGCAGTGTCTCCGTTACCAGTGTCAGCAT < 41bp 0.554468084427275 0.787036773833862 0.19618487 0.33811355 prediction 0.465137378813175 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141803164 chr7:141803165 nonsynonymous SNV 0.046 1 22 hm5C_associated_SNPs_114106 0 0 0 0 2 MGAM chr7:141803069 3'AG 141803069 Downstream 97bp
chr7 141803165 141803165 1 + C T LUAD 141803164 + 141803144 141803184 41 ATCTGGGGAGTGGGCAGTGTCCCCGTTACCAGTGTCAGCAT ATCTGGGGAGTGGGCAGTGTCTCCGTTACCAGTGTCAGCAT < 41bp 0.554468084427275 0.787036773833862 0.19618487 0.33811355 prediction 0.465137378813175 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141803164 chr7:141803165 nonsynonymous SNV 0.046 1 22 hm5C_associated_SNPs_114106 0 0 0 0 2 MGAM chr7:141803239 5'GT 141803239 Upstream 75bp
chr7 100190473 100190473 1 + C T LUAD 100190472 + 100190452 100190492 41 ACGTCTTGGCCACTCGGGAGCCGCAGGAAGTGGTGGGTACC ACGTCTTGGCCACTCGGGAGCTGCAGGAAGTGGTGGGTACC < 41bp 0.466395019276166 0.732567281738874 0.59117496 0.46469468 prediction 0.465134563477748 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100190472 chr7:100190473 nonsynonymous SNV 0.186 0 22 hm5C_associated_SNPs_114107 0 0 0 0 2 FBXO24 chr7:100190406 3'AG 100190406 Downstream 68bp
chr7 100190473 100190473 1 + C T LUAD 100190472 + 100190452 100190492 41 ACGTCTTGGCCACTCGGGAGCCGCAGGAAGTGGTGGGTACC ACGTCTTGGCCACTCGGGAGCTGCAGGAAGTGGTGGGTACC < 41bp 0.466395019276166 0.732567281738874 0.59117496 0.46469468 prediction 0.465134563477748 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100190472 chr7:100190473 nonsynonymous SNV 0.186 0 22 hm5C_associated_SNPs_114107 0 0 0 0 2 FBXO24 chr7:100190483 5'GT 100190483 Upstream 11bp
chr10 124214457 124214457 1 + C T SKCM 124214456 + 124214436 124214476 41 ATGATCCCAGCTGCTAAAATCCACACTGAGCTCTGCTTACC ATGATCCCAGCTGCTAAAATCTACACTGAGCTCTGCTTACC < 41bp 0.49121983090263 0.732566819839836 0.09817004 0.48947316 prediction 0.465133639679672 Functional Gain - ARMS2 ENSG00000254636 CDS Human protein_coding chr10:124214456 chr10:124214457 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_114108 0 0 0 0 1 ARMS2 chr10:124214540 5'GT 124214540 Upstream 84bp
chr22 23487701 23487701 1 + C A rs9624036 23487700 + 23487680 23487720 41 CCGCCGCTGGCTCAGGCGGACCAGGCCGCGCGGAGCCCCAG CCGCCGCTGGCTCAGGCGGACAAGGCCGCGCGGAGCCCCAG < 41bp 0.57575205686925 0.808308900941535 0.7249689 0.8957379 prediction 0.46511368814457 Functional Gain - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23487700 chr22:23487701 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_114111 0 0 0 0 1 RAB36 chr22:23487738 5'GT 23487738 Upstream 38bp
chr22 46719100 46719100 1 + C G rs6008684 46719096 + 46719076 46719116 41 CTTGGACTTAGGTGACTCCCCGGACAGCTCAACACCAAAGC CTTGGACTTAGGTGACTCCCCGGAGAGCTCAACACCAAAGC < 41bp 0.423063695874494 0.732556140963365 0.46347958 0.8872117 prediction 0.46511228192673 Functional Gain - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46719096 chr22:46719100 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_114113 0 0 1 0 2 GTSE1 chr22:46719087 3'AG 46719087 Downstream 14bp
chr22 46719100 46719100 1 + C G rs6008684 46719096 + 46719076 46719116 41 CTTGGACTTAGGTGACTCCCCGGACAGCTCAACACCAAAGC CTTGGACTTAGGTGACTCCCCGGAGAGCTCAACACCAAAGC < 41bp 0.423063695874494 0.732556140963365 0.46347958 0.8872117 prediction 0.46511228192673 Functional Gain - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46719096 chr22:46719100 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_114113 0 0 1 0 2 GTSE1 chr22:46719159 5'GT 46719159 Upstream 60bp
chr1 44437123 44437123 1 + C T SKCM 44437122 + 44437102 44437142 41 AGTCTCCAGCCCAGCTTTTCCCCAACCAGTGGGTTCCCTGA AGTCTCCAGCCCAGCTTTTCCTCAACCAGTGGGTTCCCTGA < 41bp 0.566624100031318 0.799176698826662 0.028038591 0.1309138 prediction 0.465105197590688 Functional Gain - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44437122 chr1:44437123 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_114115 0 0 1 0 1 DPH2 chr1:44437059 3'AG 44437059 Downstream 65bp
chr3 142416829 142416829 1 + T C UCEC 142416826 + 142416806 142416846 41 ATGCTTTAGTGATCTTTCAGCTCTATGAGATGATCCGAGTG ATGCTTTAGTGATCTTTCAGCTCCATGAGATGATCCGAGTG < 41bp 0.502416640383262 0.734961874166781 0.7217866 0.80003244 prediction 0.465090467567037 Functional Gain - PLS1 ENSG00000120756 CDS Human protein_coding chr3:142416826 chr3:142416829 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_114120 0 0 0 0 2 PLS1 chr3:142416795 3'AG 142416795 Downstream 35bp
chr3 142416829 142416829 1 + T C UCEC 142416826 + 142416806 142416846 41 ATGCTTTAGTGATCTTTCAGCTCTATGAGATGATCCGAGTG ATGCTTTAGTGATCTTTCAGCTCCATGAGATGATCCGAGTG < 41bp 0.502416640383262 0.734961874166781 0.7217866 0.80003244 prediction 0.465090467567037 Functional Gain - PLS1 ENSG00000120756 CDS Human protein_coding chr3:142416826 chr3:142416829 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_114120 0 0 0 0 2 PLS1 chr3:142416909 5'GT 142416909 Upstream 81bp
chr19 41263270 41263270 1 + A G STAD 41263267 + 41263247 41263287 41 GTCCCTGTACGCCATCTTCTCCCAGTTTGGCCAGATCCTGG GTCCCTGTACGCCATCTTCTCCCGGTTTGGCCAGATCCTGG < 41bp 0.531902553875107 0.764445543266246 0.034348905 0.23748818 prediction 0.465085978782277 Functional Gain - SNRPA ENSG00000077312 CDS Human protein_coding chr19:41263267 chr19:41263270 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_114122 0 0 1 0 1 SNRPA chr19:41263237 3'AG 41263237 Downstream 34bp
chr5 141309600 141309600 1 + C T UCEC 141309599 + 141309579 141309619 41 TGCCAGTAGTAGCATCGAGTCCGAGGCAAAACCAGCCCAGC TGCCAGTAGTAGCATCGAGTCTGAGGCAAAACCAGCCCAGC < 41bp 0.51612182601697 0.748661358287152 0.36485428 0.29185832 prediction 0.465079064540364 Functional Gain - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141309599 chr5:141309600 synonymous SNV . 0 22 hm5C_associated_SNPs_114124 0 0 1 0 2 KIAA0141 chr5:141309554 3'AG 141309554 Downstream 47bp
chr5 141309600 141309600 1 + C T UCEC 141309599 + 141309579 141309619 41 TGCCAGTAGTAGCATCGAGTCCGAGGCAAAACCAGCCCAGC TGCCAGTAGTAGCATCGAGTCTGAGGCAAAACCAGCCCAGC < 41bp 0.51612182601697 0.748661358287152 0.36485428 0.29185832 prediction 0.465079064540364 Functional Gain - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141309599 chr5:141309600 synonymous SNV . 0 22 hm5C_associated_SNPs_114124 0 0 1 0 2 KIAA0141 chr5:141309639 5'GT 141309639 Upstream 40bp
chr16 85667566 85667566 1 + C T rs375816658 85667565 + 85667545 85667585 41 TTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCA TTCGCTAGGGATGCTTTCCACTGCGACCAGGACCACCGCCA < 41bp 0.488594235149043 0.732538130710429 0.17563376 0.18559575 prediction 0.465076261420857 Functional Gain - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85667565 chr16:85667566 synonymous SNV . 0 22 hm5C_associated_SNPs_114125 0 0 1 0 1 GSE1 chr16:85667520 3'AG 85667520 Downstream 47bp
chr6 86201863 86201863 1 + T A LUSC 86201859 + 86201839 86201879 41 CCAATGGTGGAGATGGGTTCCAGATGATAAAAGATGAATTA CCAATGGTGGAGATGGGTTCCAGAAGATAAAAGATGAATTA < 41bp 0.415354977335737 0.732534197431648 0.48050064 0.82396555 prediction 0.465068394863295 Functional Gain - NT5E ENSG00000135318 CDS Human protein_coding chr6:86201859 chr6:86201863 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_114126 0 0 1 0 1 NT5E chr6:86201895 5'GT 86201895 Upstream 33bp
chr17 7479876 7479876 1 + T C UCEC 7479874 + 7479854 7479894 41 GTCATGGCACTAGGAGACTACATGGGCGCCTCCTGTCACGC GTCATGGCACTAGGAGACTACACGGGCGCCTCCTGTCACGC < 41bp 0.599606300343266 0.832138857648383 0.8238634 0.9161122 prediction 0.465065114610233 Functional Gain - EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479874 chr17:7479876 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_114127 0 0 1 0 1 EIF4A1 chr17:7479842 3'AG 7479842 Downstream 35bp
chr20 54972519 54972519 1 + C T SKCM 54972518 + 54972498 54972538 41 TGACACAGAGAGGATGTTGGCCAAAAGTGCCATGCCAATAG TGACACAGAGAGGATGTTGGCTAAAAGTGCCATGCCAATAG < 41bp 0.547830060828537 0.780361422192208 0.2284382 0.31541634 prediction 0.465062722727343 Functional Gain - CSTF1 ENSG00000101138 CDS Human protein_coding chr20:54972518 chr20:54972519 synonymous SNV . 0 22 hm5C_associated_SNPs_114128 0 0 1 0 1 CSTF1 chr20:54972540 5'GT 54972540 Upstream 22bp
chr12 121435337 121435337 1 + C G KIRC 121435333 + 121435313 121435353 41 TCAACAGCATGGGCAGCAGCCTGACCACCCTGCAGCCCGTC TCAACAGCATGGGCAGCAGCCTGAGCACCCTGCAGCCCGTC < 41bp 0.42560276697977 0.732524698320979 0.059392035 0.20098165 prediction 0.465049396641958 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121435333 chr12:121435337 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_114130 0 0 1 0 2 HNF1A chr12:121435277 3'AG 121435277 Downstream 61bp
chr12 121435337 121435337 1 + C G KIRC 121435333 + 121435313 121435353 41 TCAACAGCATGGGCAGCAGCCTGACCACCCTGCAGCCCGTC TCAACAGCATGGGCAGCAGCCTGAGCACCCTGCAGCCCGTC < 41bp 0.42560276697977 0.732524698320979 0.059392035 0.20098165 prediction 0.465049396641958 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121435333 chr12:121435337 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_114130 0 0 1 0 2 HNF1A chr12:121435294 3'AG 121435294 Downstream 44bp
chr20 44424050 44424050 1 + A G KIRP 44424047 + 44424027 44424067 41 AGGAGGTGGACGCAGAGCAGCTGATCCAGGAAGCCTGTCGG AGGAGGTGGACGCAGAGCAGCTGGTCCAGGAAGCCTGTCGG < 41bp 0.489029448175469 0.732516413203755 0.9029998 0.8064501 prediction 0.465032826407511 Functional Gain - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44424047 chr20:44424050 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_114132 0 0 1 0 2 DNTTIP1 chr20:44423984 3'AG 44423984 Downstream 67bp
chr20 44424050 44424050 1 + A G KIRP 44424047 + 44424027 44424067 41 AGGAGGTGGACGCAGAGCAGCTGATCCAGGAAGCCTGTCGG AGGAGGTGGACGCAGAGCAGCTGGTCCAGGAAGCCTGTCGG < 41bp 0.489029448175469 0.732516413203755 0.9029998 0.8064501 prediction 0.465032826407511 Functional Gain - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44424047 chr20:44424050 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_114132 0 0 1 0 2 DNTTIP1 chr20:44424082 5'GT 44424082 Upstream 33bp
chr17 41006663 41006663 1 + C G LUAD 41006662 + 41006642 41006682 41 ACAGCAACAAGTGGGGTCACCCCCGGGGCTACCGCATCCAG ACAGCAACAAGTGGGGTCACCGCCGGGGCTACCGCATCCAG < 41bp 0.645689469946286 0.878201405607617 0.2811907 0.30738208 prediction 0.465023871322663 Functional Gain - AOC3 ENSG00000131471 CDS Human protein_coding chr17:41006662 chr17:41006663 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_114133 0 0 1 0 1 AOC3 chr17:41006750 5'GT 41006750 Upstream 88bp
chr12 52699928 52699928 1 + C G LUSC 52699924 + 52699904 52699944 41 GATGCCCGCTGCAAGTTGGCCGAGCTGGAGGGTGCCCTGCA GATGCCCGCTGCAAGTTGGCCGAGGTGGAGGGTGCCCTGCA < 41bp 0.624657471513321 0.85715906609206 0.7471571 0.90892994 prediction 0.465003189157477 Functional Gain - KRT86 ENSG00000170442 CDS Human protein_coding chr12:52699924 chr12:52699928 nonsynonymous SNV 0.443 3 25 hm5C_associated_SNPs_114136 0 0 0 0 1 KRT86 chr12:52699844 3'AG 52699844 Downstream 85bp
chr16 1815985 1815985 1 + C T SKCM 1815984 + 1815964 1816004 41 CCAGCGACAGCGACTACCCTCCCGGGGAGATGTTCCTGGAC CCAGCGACAGCGACTACCCTCTCGGGGAGATGTTCCTGGAC < 41bp 0.476828230952196 0.732500412963802 0.42681026 0.20862952 prediction 0.465000825927604 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1815984 chr16:1815985 nonsynonymous SNV 0.562 1 22 hm5C_associated_SNPs_114138 0 0 0 0 1 MAPK8IP3 chr16:1815961 3'AG 1815961 Downstream 25bp
chr11 1087946 1087946 1 + A G UCEC 1087943 + 1087923 1087963 41 ACTATGAGCCATGTGGGAACCGGAGCTTCGAGACCTGCAGG ACTATGAGCCATGTGGGAACCGGGGCTTCGAGACCTGCAGG < 41bp 0.498173710245912 0.73250003282313 0.92565763 0.95172614 prediction 0.46500006564626 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1087943 chr11:1087946 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_114139 0 0 0 0 1 MUC2 chr11:1087878 3'AG 1087878 Downstream 69bp
chr19 41630767 41630767 1 + C T UCEC 41630766 + 41630746 41630786 41 ATCCCCATGAACTTGCCGCACCGCGTCACTAGGGACACGGC ATCCCCATGAACTTGCCGCACTGCGTCACTAGGGACACGGC < 41bp 0.493138572857275 0.732498840856406 0.12659144 0.119261116 prediction 0.464997681712813 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41630766 chr19:41630767 nonsynonymous SNV 0.056 3 22 hm5C_associated_SNPs_114140 0 0 0 0 1 CYP2F1 chr19:41630811 5'GT 41630811 Upstream 45bp
chr11 124742917 124742917 1 + T G HNSC 124742914 + 124742894 124742934 41 TCCGATGGAAGAAGGATGGGCAGTGGCTGCAGGGGGATGAC TCCGATGGAAGAAGGATGGGCAGGGGCTGCAGGGGGATGAC < 41bp 0.312872273447544 0.732497829828265 0.35765567 0.89815414 prediction 0.464995659656531 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124742914 chr11:124742917 nonsynonymous SNV 0.993 0 24 hm5C_associated_SNPs_114141 0 0 0 0 1 ROBO3 chr11:124742985 5'GT 124742985 Upstream 69bp
chr1 50666530 50666530 1 + C A LUAD 50666529 + 50666509 50666549 41 GCTTGTCCCCCCAGGTTCTCCCCAATTACCATTGATGGAAT GCTTGTCCCCCCAGGTTCTCCACAATTACCATTGATGGAAT < 41bp 0.538460822277213 0.770955842619772 0.11422017 0.12160486 prediction 0.46499004068512 Functional Gain - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50666529 chr1:50666530 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_114143 0 0 0 0 2 ELAVL4 chr1:50666481 3'AG 50666481 Downstream 50bp
chr1 50666530 50666530 1 + C A LUAD 50666529 + 50666509 50666549 41 GCTTGTCCCCCCAGGTTCTCCCCAATTACCATTGATGGAAT GCTTGTCCCCCCAGGTTCTCCACAATTACCATTGATGGAAT < 41bp 0.538460822277213 0.770955842619772 0.11422017 0.12160486 prediction 0.46499004068512 Functional Gain - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50666529 chr1:50666530 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_114143 0 0 0 0 2 ELAVL4 chr1:50666523 3'AG 50666523 Downstream 8bp
chr12 122492863 122492863 1 + C T GBM 122492862 + 122492842 122492882 41 TCGAGGTCTCAGAGGGGCAGCCAGATCGGCCGGGAGCCCAT TCGAGGTCTCAGAGGGGCAGCTAGATCGGCCGGGAGCCCAT < 41bp 0.547311416558152 0.779804567029769 0.4664117 0.37784997 prediction 0.464986300943234 Functional Gain - BCL7A ENSG00000110987 CDS Human protein_coding chr12:122492862 chr12:122492863 stopgain 0.017 0 22 hm5C_associated_SNPs_114144 0 0 1 0 1 BCL7A chr12:122492895 5'GT 122492895 Upstream 33bp
chr2 232262515 232262515 1 + C A UCEC 232262511 + 232262491 232262531 41 GCCGTGACGGTGTTCCAACGCAGTCTCACCCCTGGTCAGTT GCCGTGACGGTGTTCCAACGCAGTATCACCCCTGGTCAGTT < 41bp 0.333456818695766 0.732489273381274 0.3988008 0.37558374 prediction 0.464978546762547 Functional Gain - B3GNT7 ENSG00000156966 CDS Human protein_coding chr2:232262511 chr2:232262515 nonsynonymous SNV 0.146 0 25 hm5C_associated_SNPs_114146 0 0 0 0 1 B3GNT7 chr2:232262442 3'AG 232262442 Downstream 74bp
chr19 15760797 15760797 1 + T A LUAD 15760793 + 15760773 15760813 41 CAAAAAGACACCAGCAGATCCTCCTGTACATAGACTTCCTG CAAAAAGACACCAGCAGATCCTCCAGTACATAGACTTCCTG < 41bp 0.379922752789882 0.732480098116759 0.05300653 0.94543433 prediction 0.464960196233517 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15760793 chr19:15760797 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_114149 0 0 1 0 1 CYP4F3 chr19:15760723 3'AG 15760723 Downstream 75bp
chr14 65511143 65511143 1 + C T UCEC 65511142 + 65511122 65511162 41 GGGCTCCTGCCCCTGCTCCACCGCGCACTGCACGCCCAAGG GGGCTCCTGCCCCTGCTCCACTGCGCACTGCACGCCCAAGG < 41bp 0.484408807532705 0.732479344706606 0.11546007 0.16919404 prediction 0.464958689413211 Functional Gain - CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65511142 chr14:65511143 nonsynonymous SNV 0.883 1 22 hm5C_associated_SNPs_114150 0 0 1 0 1 CHURC1-FNTB;FNTB chr14:65511161 5'GT 65511161 Upstream 19bp
chr11 76829369 76829369 1 + C A UCEC 76829368 + 76829348 76829388 41 CGCGGTGGCGGCTGCATCAACCACAAGGACACCTTCTTCCA CGCGGTGGCGGCTGCATCAACAACAAGGACACCTTCTTCCA < 41bp 0.576793227689145 0.809270441985113 0.039833814 0.10703039 prediction 0.464954428591936 Functional Gain - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76829368 chr11:76829369 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_114151 0 0 0 0 1 CAPN5 chr11:76829398 5'GT 76829398 Upstream 30bp
chr20 29956498 29956498 1 + C A LUAD 29956497 + 29956477 29956517 41 TCCTATGCTTGTGCTCCTACCCCAAGTGATCCCAGGTAATC TCCTATGCTTGTGCTCCTACCACAAGTGATCCCAGGTAATC < 41bp 0.481811068453458 0.732477009724859 0.54873127 0.7161981 prediction 0.464954019449718 Functional Gain - DEFB118 ENSG00000131068 CDS Human protein_coding chr20:29956497 chr20:29956498 synonymous SNV . 0 22 hm5C_associated_SNPs_114152 0 0 0 0 1 DEFB118 chr20:29956511 5'GT 29956511 Upstream 14bp
chr20 5897539 5897539 1 + C T SKCM 5897538 + 5897518 5897558 41 CCAGCGCTCCACCCATCACCCCTGAGTGCCGCCAAGTCCTG CCAGCGCTCCACCCATCACCCTTGAGTGCCGCCAAGTCCTG < 41bp 0.573270667025989 0.805742674200085 0.008767605 0.0048781335 prediction 0.464944014348193 Functional Gain - CHGB ENSG00000089199 CDS Human protein_coding chr20:5897538 chr20:5897539 nonsynonymous SNV 0.990 2 22 hm5C_associated_SNPs_114153 0 0 0 0 3 CHGB chr20:5897472 3'AG 5897472 Downstream 68bp
chr20 5897539 5897539 1 + C T SKCM 5897538 + 5897518 5897558 41 CCAGCGCTCCACCCATCACCCCTGAGTGCCGCCAAGTCCTG CCAGCGCTCCACCCATCACCCTTGAGTGCCGCCAAGTCCTG < 41bp 0.573270667025989 0.805742674200085 0.008767605 0.0048781335 prediction 0.464944014348193 Functional Gain - CHGB ENSG00000089199 CDS Human protein_coding chr20:5897538 chr20:5897539 nonsynonymous SNV 0.990 2 22 hm5C_associated_SNPs_114153 0 0 0 0 3 CHGB chr20:5897552 5'GT 5897552 Upstream 14bp
chr20 5897539 5897539 1 + C T SKCM 5897538 + 5897518 5897558 41 CCAGCGCTCCACCCATCACCCCTGAGTGCCGCCAAGTCCTG CCAGCGCTCCACCCATCACCCTTGAGTGCCGCCAAGTCCTG < 41bp 0.573270667025989 0.805742674200085 0.008767605 0.0048781335 prediction 0.464944014348193 Functional Gain - CHGB ENSG00000089199 CDS Human protein_coding chr20:5897538 chr20:5897539 nonsynonymous SNV 0.990 2 22 hm5C_associated_SNPs_114153 0 0 0 0 3 CHGB chr20:5897565 5'GT 5897565 Upstream 27bp
chr19 15163079 15163079 1 + C A COAD 15163075 + 15163055 15163095 41 AAGGAGAAATGAGCAATCCGCGGTCTTTGGAAGAGGTAGGC AAGGAGAAATGAGCAATCCGCGGTATTTGGAAGAGGTAGGC < 41bp 0.339839383009196 0.732471158450626 0.7632744 0.8054002 prediction 0.464942316901251 Functional Gain - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15163075 chr19:15163079 nonsynonymous SNV 0.024 1 25 hm5C_associated_SNPs_114154 0 0 0 0 2 CASP14 chr19:15163017 3'AG 15163017 Downstream 63bp
chr19 15163079 15163079 1 + C A COAD 15163075 + 15163055 15163095 41 AAGGAGAAATGAGCAATCCGCGGTCTTTGGAAGAGGTAGGC AAGGAGAAATGAGCAATCCGCGGTATTTGGAAGAGGTAGGC < 41bp 0.339839383009196 0.732471158450626 0.7632744 0.8054002 prediction 0.464942316901251 Functional Gain - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15163075 chr19:15163079 nonsynonymous SNV 0.024 1 25 hm5C_associated_SNPs_114154 0 0 0 0 2 CASP14 chr19:15163089 5'GT 15163089 Upstream 11bp
chr5 54640370 54640370 1 + A G BLCA 54640367 + 54640347 54640387 41 CAGCCTTGTCATGTTATTTACACAGATTATCGGCCCACTCC CAGCCTTGTCATGTTATTTACACGGATTATCGGCCCACTCC < 41bp 0.502358725668898 0.734827526560353 0.011371821 0.044802547 prediction 0.464937601782909 Functional Gain - SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54640367 chr5:54640370 synonymous SNV . 0 24 hm5C_associated_SNPs_114156 0 0 1 0 2 SKIV2L2 chr5:54640350 3'AG 54640350 Downstream 21bp
chr5 54640370 54640370 1 + A G BLCA 54640367 + 54640347 54640387 41 CAGCCTTGTCATGTTATTTACACAGATTATCGGCCCACTCC CAGCCTTGTCATGTTATTTACACGGATTATCGGCCCACTCC < 41bp 0.502358725668898 0.734827526560353 0.011371821 0.044802547 prediction 0.464937601782909 Functional Gain - SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54640367 chr5:54640370 synonymous SNV . 0 24 hm5C_associated_SNPs_114156 0 0 1 0 2 SKIV2L2 chr5:54640448 5'GT 54640448 Upstream 79bp
chr1 160136447 160136447 1 + C T rs148126609 160136446 + 160136426 160136466 41 ACGGGCACCCTCACCCAGAACCGCATGACCGTCGCCCACAT ACGGGCACCCTCACCCAGAACTGCATGACCGTCGCCCACAT < 41bp 0.531689366998938 0.764140675204361 0.15805122 0.10699424 prediction 0.464902616410845 Functional Gain - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160136446 chr1:160136447 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_114159 0 0 0 0 1 ATP1A4 chr1:160136516 5'GT 160136516 Upstream 70bp
chr11 65164451 65164451 1 + C T UCEC 65164450 + 65164430 65164470 41 GCCGCCCTGGGCACCCACTACCGCGCCTATCTCCTCAAGTG GCCGCCCTGGGCACCCACTACTGCGCCTATCTCCTCAAGTG < 41bp 0.480952892903285 0.732449915387734 0.8004798 0.49747938 prediction 0.464899830775467 Functional Gain - FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65164450 chr11:65164451 nonsynonymous SNV 0.451 4 22 hm5C_associated_SNPs_114161 0 0 1 0 1 FRMD8 chr11:65164491 5'GT 65164491 Upstream 41bp
chr5 139218355 139218355 1 + C A LUAD 139218351 + 139218331 139218371 41 CCCTCCTGCACCACCCGCCTCTGCCAGGTACATGTTCCTGG CCCTCCTGCACCACCCGCCTCTGCAAGGTACATGTTCCTGG < 41bp 0.311392410836209 0.732429635507518 0.025187671 0.12755817 prediction 0.464859271015035 Functional Gain - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139218351 chr5:139218355 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_114168 0 0 0 0 1 PSD2 chr5:139218357 5'GT 139218357 Upstream 3bp
chr20 20232324 20232324 1 + C T SKCM 20232323 + 20232303 20232343 41 GGTAGAATGACCGGCATAGACCGAGCAGCCAAGCACGTTGT GGTAGAATGACCGGCATAGACTGAGCAGCCAAGCACGTTGT < 41bp 0.539663810237334 0.772083629729599 0.7387938 0.52915317 prediction 0.46483963898453 Functional Gain - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20232323 chr20:20232324 stopgain 0.997 1 22 hm5C_associated_SNPs_114175 0 0 0 0 2 CFAP61 chr20:20232239 3'AG 20232239 Downstream 86bp
chr20 20232324 20232324 1 + C T SKCM 20232323 + 20232303 20232343 41 GGTAGAATGACCGGCATAGACCGAGCAGCCAAGCACGTTGT GGTAGAATGACCGGCATAGACTGAGCAGCCAAGCACGTTGT < 41bp 0.539663810237334 0.772083629729599 0.7387938 0.52915317 prediction 0.46483963898453 Functional Gain - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20232323 chr20:20232324 stopgain 0.997 1 22 hm5C_associated_SNPs_114175 0 0 0 0 2 CFAP61 chr20:20232407 5'GT 20232407 Upstream 84bp
chr2 219496868 219496868 1 + A G COAD 219496865 + 219496845 219496885 41 TTTTTGTCCCCTAGGAGCTTCGGAGGAAGATCCTGGTGAAG TTTTTGTCCCCTAGGAGCTTCGGGGGAAGATCCTGGTGAAG < 41bp 0.511948685743347 0.744368376699793 0.69717795 0.8913566 prediction 0.464839381912892 Functional Gain - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219496865 chr2:219496868 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_114176 0 0 0 0 1 PLCD4 chr2:219496859 3'AG 219496859 Downstream 10bp
chr11 554007 554007 1 + A G UCEC 554004 + 553984 554024 41 AGCACCTGGTCCCTTCACCTCCCAAGCACCCAAGGCCACGA AGCACCTGGTCCCTTCACCTCCCGAGCACCCAAGGCCACGA < 41bp 0.527441603860574 0.759845407690193 0.5083809 0.53786135 prediction 0.464807607659237 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:554004 chr11:554007 nonsynonymous SNV 0.007 2 24 hm5C_associated_SNPs_114178 0 0 0 0 1 LRRC56 chr11:553963 3'AG 553963 Downstream 45bp
chr1 28891217 28891217 1 + C A UCEC 28891216 + 28891196 28891236 41 TCTTGTTCTCTCTCCTCAGCCCTGAGTATTCCCTCTTTGTG TCTTGTTCTCTCTCCTCAGCCATGAGTATTCCCTCTTTGTG < 41bp 0.472366938774699 0.73239909910285 0.21634743 0.404135 prediction 0.464798198205699 Functional Gain - TRNAU1AP ENSG00000180098 CDS Human protein_coding chr1:28891216 chr1:28891217 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_114180 0 0 1 0 1 TRNAU1AP chr1:28891215 3'AG 28891215 Downstream 3bp
chr20 13269323 13269323 1 + C A LUSC 13269319 + 13269299 13269339 41 ATCGAGGACCTGTGACCGTCCAAACTGCCCAGGTGCGTTTA ATCGAGGACCTGTGACCGTCCAAAATGCCCAGGTGCGTTTA < 41bp 0.30989700858076 0.732392663339123 0.1563969 0.17869425 prediction 0.464785326678247 Functional Gain - ISM1 ENSG00000101230 CDS Human protein_coding chr20:13269319 chr20:13269323 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_114181 0 0 0 0 1 ISM1 chr20:13269330 5'GT 13269330 Upstream 8bp
chr19 3543260 3543260 1 + C A UCEC 3543259 + 3543239 3543279 41 CTACCTGTCCCTGGAGGGTTCCCGCTGGCCACCAGCCATCA CTACCTGTCCCTGGAGGGTTCACGCTGGCCACCAGCCATCA < 41bp 0.475407394861653 0.732392522745774 0.6338867 0.55995744 prediction 0.464785045491549 Functional Gain - C19orf71 ENSG00000183397 CDS Human protein_coding chr19:3543259 chr19:3543260 synonymous SNV . 0 22 hm5C_associated_SNPs_114182 0 0 0 0 1 C19orf71 chr19:3543233 3'AG 3543233 Downstream 28bp
chr2 202050825 202050825 1 + C A THCA 202050821 + 202050801 202050841 41 GAAGTGGAGCGACTGCTGCCCACCCGACAAAGGGTTTCTCT GAAGTGGAGCGACTGCTGCCCACCAGACAAAGGGTTTCTCT < 41bp 0.312914518140003 0.732383619423954 0.04705718 0.04927072 prediction 0.464767238847908 Functional Gain - CASP10 ENSG00000003400 CDS Human protein_coding chr2:202050821 chr2:202050825 synonymous SNV . 0 25 hm5C_associated_SNPs_114184 0 0 1 0 1 CASP10 chr2:202050847 5'GT 202050847 Upstream 23bp
chr14 65198157 65198157 1 + C T rs145013864 65198156 + 65198136 65198176 41 CTTGTCCTGGAGGGCACATTCCGCGTGCATCGCGTGCGCAA CTTGTCCTGGAGGGCACATTCTGCGTGCATCGCGTGCGCAA < 41bp 0.568836739036329 0.801213229352087 0.8994745 0.61449444 prediction 0.464752980631517 Functional Gain - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65198156 chr14:65198157 nonsynonymous SNV 0.965 4 22 hm5C_associated_SNPs_114186 0 0 0 0 1 PLEKHG3 chr14:65198079 3'AG 65198079 Downstream 79bp
chr15 41793920 41793920 1 + A G LUSC 41793917 + 41793897 41793937 41 CTGCCTGGCGCGGCTGATGGCTGACGCGCTGCGCGGCTGCG CTGCCTGGCGCGGCTGATGGCTGGCGCGCTGCGCGGCTGCG < 41bp 0.549093480488795 0.781456166363021 0.6192591 0.8091283 prediction 0.46472537174845 Functional Gain - ITPKA ENSG00000137825 CDS Human protein_coding chr15:41793917 chr15:41793920 nonsynonymous SNV 0.969 4 24 hm5C_associated_SNPs_114187 0 0 1 0 1 ITPKA chr15:41793833 3'AG 41793833 Downstream 88bp
chr17 9538770 9538770 1 + C T rs140517505 9538769 + 9538749 9538789 41 ACCCAGAAGCTGGAGGAGGCCCTGAAGGAACACAAGTCATC ACCCAGAAGCTGGAGGAGGCCTTGAAGGAACACAAGTCATC < 41bp 0.469810262291344 0.732357675479355 0.21265647 0.20735335 prediction 0.46471535095871 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9538769 chr17:9538770 synonymous SNV . 0 22 hm5C_associated_SNPs_114189 0 0 0 0 1 CFAP52 chr17:9538722 3'AG 9538722 Downstream 49bp
chr5 131409603 131409603 1 + C A LUAD 131409602 + 131409582 131409622 41 GCCCAGCCCCAGCACGCAGCCCTGGGAGCATGTGAATGCCA GCCCAGCCCCAGCACGCAGCCATGGGAGCATGTGAATGCCA < 41bp 0.567677929962746 0.800024461042277 0.0776259 0.58982855 prediction 0.464693062159063 Functional Gain - CSF2 ENSG00000164400 CDS Human protein_coding chr5:131409602 chr5:131409603 synonymous SNV . 0 22 hm5C_associated_SNPs_114194 0 0 0 0 1 CSF2 chr5:131409675 5'GT 131409675 Upstream 73bp
chr11 66190407 66190407 1 + C T UCEC 66190406 + 66190386 66190426 41 CCTGGCTCTACTGGACATCTCCGAGAGGTAAGCCTGGAGTG CCTGGCTCTACTGGACATCTCTGAGAGGTAAGCCTGGAGTG < 41bp 0.497175248248544 0.73234588644194 0.43166608 0.094672024 prediction 0.464691772883881 Functional Gain - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66190406 chr11:66190407 synonymous SNV . 0 22 hm5C_associated_SNPs_114195 0 0 0 0 1 NPAS4 chr11:66190412 5'GT 66190412 Upstream 6bp
chr1 233086394 233086394 1 + C G rs79910465 233086390 + 233086370 233086410 41 GTCGCGACCCTGGTCCGGACCTGACCTGAATTGCGACCCCA GTCGCGACCCTGGTCCGGACCTGAGCTGAATTGCGACCCCA < 41bp 0.607742866060116 0.840085817710032 0.20721477 0.5823624 prediction 0.464685903299832 Functional Gain - NTPCR ENSG00000135778 UTR5 Human protein_coding chr1:233086390 chr1:233086394 . . 0 25 hm5C_associated_SNPs_114196 0 0 1 0 1 NTPCR chr1:233086490 5'GT 233086490 Upstream 97bp
chr18 29784212 29784212 1 + C T COAD 29784211 + 29784191 29784231 41 TCCATCGGGGCAAACTGTGACCGAATAGCAACAGTTCAACA TCCATCGGGGCAAACTGTGACTGAATAGCAACAGTTCAACA < 41bp 0.548918562856199 0.781259443359207 0.018759996 0.18311542 prediction 0.464681761006015 Functional Gain - MEP1B ENSG00000141434 CDS Human protein_coding chr18:29784211 chr18:29784212 stopgain 0.998 1 22 hm5C_associated_SNPs_114198 0 0 0 0 1 MEP1B chr18:29784145 3'AG 29784145 Downstream 68bp
chr19 17892591 17892591 1 + A G rs2042298 17892588 + 17892568 17892608 41 CTGCCCATAGCCACAGCCTTCACAGAGTATGTCCACGCCTA CTGCCCATAGCCACAGCCTTCACGGAGTATGTCCACGCCTA < 41bp 0.541431554018265 0.773770589870144 0.37248236 0.8777977 prediction 0.464678071703757 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17892588 chr19:17892591 synonymous SNV . 0 24 hm5C_associated_SNPs_114199 0 0 0 0 2 FCHO1 chr19:17892521 3'AG 17892521 Downstream 71bp
chr19 17892591 17892591 1 + A G rs2042298 17892588 + 17892568 17892608 41 CTGCCCATAGCCACAGCCTTCACAGAGTATGTCCACGCCTA CTGCCCATAGCCACAGCCTTCACGGAGTATGTCCACGCCTA < 41bp 0.541431554018265 0.773770589870144 0.37248236 0.8777977 prediction 0.464678071703757 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17892588 chr19:17892591 synonymous SNV . 0 24 hm5C_associated_SNPs_114199 0 0 0 0 2 FCHO1 chr19:17892629 5'GT 17892629 Upstream 39bp
chr6 33169579 33169579 1 + C T SKCM 33169578 + 33169558 33169598 41 TTTTTTGTCCTCTTCCTTATCCCCGTGGAGTCGAACTCTCC TTTTTTGTCCTCTTCCTTATCTCCGTGGAGTCGAACTCTCC < 41bp 0.519189867794712 0.751519358736597 0.34085613 0.29703367 prediction 0.464658981883771 Functional Gain - SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33169578 chr6:33169579 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_114204 0 0 1 0 2 SLC39A7 chr6:33169522 3'AG 33169522 Downstream 58bp
chr6 33169579 33169579 1 + C T SKCM 33169578 + 33169558 33169598 41 TTTTTTGTCCTCTTCCTTATCCCCGTGGAGTCGAACTCTCC TTTTTTGTCCTCTTCCTTATCTCCGTGGAGTCGAACTCTCC < 41bp 0.519189867794712 0.751519358736597 0.34085613 0.29703367 prediction 0.464658981883771 Functional Gain - SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33169578 chr6:33169579 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_114204 0 0 1 0 2 SLC39A7 chr6:33169538 3'AG 33169538 Downstream 42bp
chr1 241729888 241729888 1 + C T rs531693759 241729887 + 241729867 241729907 41 ATTTCTTCCAGAAATACTTTCCGGATGCCATCCCTCTAATT ATTTCTTCCAGAAATACTTTCTGGATGCCATCCCTCTAATT < 41bp 0.475750972918106 0.732323168468611 0.833056 0.62745196 prediction 0.464646336937222 Functional Gain - KMO ENSG00000117009 CDS Human protein_coding chr1:241729887 chr1:241729888 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_114205 0 0 0 0 1 KMO chr1:241729791 3'AG 241729791 Downstream 98bp
chr15 58837998 58837998 1 + C T SARC 58837997 + 58837977 58838017 41 CCCCCAGCAATCGTCTTTCTCCAGATGATGCCAATTTTGTG CCCCCAGCAATCGTCTTTCTCTAGATGATGCCAATTTTGTG < 41bp 0.566641878913815 0.79896469445537 0.806926 0.2878372 prediction 0.46464563108311 Functional Gain - LIPC ENSG00000166035 CDS Human protein_coding chr15:58837997 chr15:58837998 nonsynonymous SNV 0.908 5 22 hm5C_associated_SNPs_114206 0 0 0 0 1 LIPC chr15:58837941 3'AG 58837941 Downstream 58bp
chr7 100197715 100197715 1 - G T GBM 100197719 - 100197699 100197739 41 TCCTTGCTGAACTCTGAGCTCTGGCTCAGCACCAGGGAGTG TCCTTGCTGAACTCTGAGCTCTGGATCAGCACCAGGGAGTG < 41bp 0.697458696480496 0.929779128534057 0.054705292 0.09245491 prediction 0.464640864107122 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100197719 chr7:100197715 nonsynonymous SNV 0.977 1 25 hm5C_associated_SNPs_114207 0 0 0 0 2 FBXO24 chr7:100197663 5'GT 100197663 Upstream 53bp
chr7 100197715 100197715 1 - G T GBM 100197719 - 100197699 100197739 41 TCCTTGCTGAACTCTGAGCTCTGGCTCAGCACCAGGGAGTG TCCTTGCTGAACTCTGAGCTCTGGATCAGCACCAGGGAGTG < 41bp 0.697458696480496 0.929779128534057 0.054705292 0.09245491 prediction 0.464640864107122 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100197719 chr7:100197715 nonsynonymous SNV 0.977 1 25 hm5C_associated_SNPs_114207 0 0 0 0 2 FBXO24 chr7:100197812 3'AG 100197812 Downstream 98bp
chr11 8009241 8009241 1 + C T rs12421289 8009240 + 8009220 8009260 41 GAGACGCAACGAGGGTGCTGCCCGAGTTATCGGGACCCTGT GAGACGCAACGAGGGTGCTGCTCGAGTTATCGGGACCCTGT < 41bp 0.543772779286103 0.776092945761806 0.37330285 0.29792053 prediction 0.464640332951407 Functional Gain - EIF3F ENSG00000175390 CDS Human protein_coding chr11:8009240 chr11:8009241 synonymous SNV . 0 22 hm5C_associated_SNPs_114208 0 0 1 0 1 EIF3F chr11:8009263 5'GT 8009263 Upstream 23bp
chr21 43524017 43524017 1 + C T GBM 43524016 + 43523996 43524036 41 CCAGTGGTGTCTGACTTGTACCGAAGTGGGAAGCTGAGAAT CCAGTGGTGTCTGACTTGTACTGAAGTGGGAAGCTGAGAAT < 41bp 0.511723889574657 0.744043874709985 0.570094 0.49792245 prediction 0.464639970270657 Functional Gain - UMODL1 ENSG00000177398;ENSG00000184385 CDS Human other chr21:43524016 chr21:43524017 stopgain 0.008 0 22 hm5C_associated_SNPs_114209 0 0 0 0 1 UMODL1 chr21:43523978 3'AG 43523978 Downstream 40bp
chr1 117639996 117639996 1 + C T rs35053456 117639995 + 117639975 117640015 41 AATGCTAATCTCTCTCTTGGCCGGAGGTGTTGGTCTAAACC AATGCTAATCTCTCTCTTGGCTGGAGGTGTTGGTCTAAACC < 41bp 0.485028462304707 0.732311286009579 0.56905925 0.1676991 prediction 0.464622572019157 Functional Gain - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117639995 chr1:117639996 synonymous SNV . 0 22 hm5C_associated_SNPs_114213 0 0 1 0 2 TTF2 chr1:117639973 3'AG 117639973 Downstream 24bp
chr1 117639996 117639996 1 + C T rs35053456 117639995 + 117639975 117640015 41 AATGCTAATCTCTCTCTTGGCCGGAGGTGTTGGTCTAAACC AATGCTAATCTCTCTCTTGGCTGGAGGTGTTGGTCTAAACC < 41bp 0.485028462304707 0.732311286009579 0.56905925 0.1676991 prediction 0.464622572019157 Functional Gain - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117639995 chr1:117639996 synonymous SNV . 0 22 hm5C_associated_SNPs_114213 0 0 1 0 2 TTF2 chr1:117640055 5'GT 117640055 Upstream 60bp
chr1 67205172 67205172 1 + T C LUAD 67205170 + 67205150 67205190 41 AATGTGCAGTTCCTGGTCCCCATCGACGGAGGAGTCACCAA AATGTGCAGTTCCTGGTCCCCACCGACGGAGGAGTCACCAA < 41bp 0.452393656427311 0.732307901662099 0.358955 0.2260257 prediction 0.464615803324198 Functional Gain - SGIP1 ENSG00000118473 CDS Human protein_coding chr1:67205170 chr1:67205172 nonsynonymous SNV 0.959 2 23 hm5C_associated_SNPs_114214 0 0 0 0 1 SGIP1 chr1:67205220 5'GT 67205220 Upstream 49bp
chr6 28117325 28117325 1 + C A LIHC 28117324 + 28117304 28117344 41 TAGTACATTCAGCATCTGCACCAGAGCCTCCAAATACTCAG TAGTACATTCAGCATCTGCACAAGAGCCTCCAAATACTCAG < 41bp 0.555035366936207 0.7873300169544 0.006057352 0.002978146 prediction 0.464589300036385 Functional Gain - ZKSCAN8 ENSG00000198315 CDS Human protein_coding chr6:28117324 chr6:28117325 nonsynonymous SNV 0.776 0 22 hm5C_associated_SNPs_114216 0 0 1 0 2 ZKSCAN8 chr6:28117261 3'AG 28117261 Downstream 65bp
chr6 28117325 28117325 1 + C A LIHC 28117324 + 28117304 28117344 41 TAGTACATTCAGCATCTGCACCAGAGCCTCCAAATACTCAG TAGTACATTCAGCATCTGCACAAGAGCCTCCAAATACTCAG < 41bp 0.555035366936207 0.7873300169544 0.006057352 0.002978146 prediction 0.464589300036385 Functional Gain - ZKSCAN8 ENSG00000198315 CDS Human protein_coding chr6:28117324 chr6:28117325 nonsynonymous SNV 0.776 0 22 hm5C_associated_SNPs_114216 0 0 1 0 2 ZKSCAN8 chr6:28117402 5'GT 28117402 Upstream 78bp
chr1 26510755 26510755 1 + C T SKCM 26510754 + 26510734 26510774 41 ACCTGTCTTCAAACCCCAGTCCCGGACCCAGCCCTGCCTGG ACCTGTCTTCAAACCCCAGTCTCGGACCCAGCCCTGCCTGG < 41bp 0.547484745644 0.779778932366493 0.3092823 0.15031019 prediction 0.464588373444986 Functional Gain - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26510754 chr1:26510755 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_114217 0 0 1 0 2 CNKSR1 chr1:26510705 3'AG 26510705 Downstream 51bp
chr1 26510755 26510755 1 + C T SKCM 26510754 + 26510734 26510774 41 ACCTGTCTTCAAACCCCAGTCCCGGACCCAGCCCTGCCTGG ACCTGTCTTCAAACCCCAGTCTCGGACCCAGCCCTGCCTGG < 41bp 0.547484745644 0.779778932366493 0.3092823 0.15031019 prediction 0.464588373444986 Functional Gain - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26510754 chr1:26510755 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_114217 0 0 1 0 2 CNKSR1 chr1:26510778 5'GT 26510778 Upstream 24bp
chr17 263022 263022 1 + C T SKCM 263021 + 263001 263041 41 AGTCCTTGCAAAGAGCGTGGCCCGAAACCAGAGCACAGACA AGTCCTTGCAAAGAGCGTGGCTCGAAACCAGAGCACAGACA < 41bp 0.488613576236094 0.73229388625501 0.018366724 0.07876128 prediction 0.464587772510019 Functional Gain - C17orf97 ENSG00000187624 CDS Human protein_coding chr17:263021 chr17:263022 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_114218 0 0 0 0 1 C17orf97 chr17:262939 3'AG 262939 Downstream 84bp
chr1 10459136 10459136 1 + C G rs189369210 10459135 + 10459115 10459155 41 GTCTTTCCCTCACTCGTCCTCCGCGCGTCGCCGCTCTTCGG GTCTTTCCCTCACTCGTCCTCGGCGCGTCGCCGCTCTTCGG < 41bp 0.59030115928128 0.822594978834078 0.54090995 0.9348502 prediction 0.464587639105596 Functional Gain - PGD ENSG00000142657 UTR5 Human protein_coding chr1:10459135 chr1:10459136 . . 0 22 hm5C_associated_SNPs_114219 0 0 1 0 1 PGD chr1:10459182 5'GT 10459182 Upstream 47bp
chr9 140508832 140508832 1 + C A LUSC 140508828 + 140508808 140508848 41 GAGGGTGCGGGCGTCAAGGCCTGGCGGCGGGCGCAGTGGCA GAGGGTGCGGGCGTCAAGGCCTGGAGGCGGGCGCAGTGGCA < 41bp 0.698725145478713 0.931017618286254 0.7371547 0.8053595 prediction 0.464584945615081 Functional Gain - ARRDC1 ENSG00000197070 CDS Human protein_coding chr9:140508828 chr9:140508832 synonymous SNV . 0 25 hm5C_associated_SNPs_114220 0 0 1 0 2 ARRDC1 chr9:140508751 3'AG 140508751 Downstream 82bp
chr9 140508832 140508832 1 + C A LUSC 140508828 + 140508808 140508848 41 GAGGGTGCGGGCGTCAAGGCCTGGCGGCGGGCGCAGTGGCA GAGGGTGCGGGCGTCAAGGCCTGGAGGCGGGCGCAGTGGCA < 41bp 0.698725145478713 0.931017618286254 0.7371547 0.8053595 prediction 0.464584945615081 Functional Gain - ARRDC1 ENSG00000197070 CDS Human protein_coding chr9:140508828 chr9:140508832 synonymous SNV . 0 25 hm5C_associated_SNPs_114220 0 0 1 0 2 ARRDC1 chr9:140508927 5'GT 140508927 Upstream 96bp
chr1 1396282 1396282 1 + C A LGG 1396278 + 1396258 1396298 41 TTAACGAGTATGTTCTTAAGCCGGCCACAGAAGGAAAGCGG TTAACGAGTATGTTCTTAAGCCGGACACAGAAGGAAAGCGG < 41bp 0.328751369245626 0.732292360055032 0.50901777 0.36718333 prediction 0.464584720110064 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1396278 chr1:1396282 nonsynonymous SNV 0.593 3 25 hm5C_associated_SNPs_114221 0 0 0 0 1 ATAD3C chr1:1396297 5'GT 1396297 Upstream 16bp
chr8 56912010 56912010 1 + A G HNSC 56912007 + 56911987 56912027 41 CCCTATTAAGTGGACGGCTCCAGAAGCAATCAACTTTGGAT CCCTATTAAGTGGACGGCTCCAGGAGCAATCAACTTTGGAT < 41bp 0.499194484390898 0.732289319407957 0.29070914 0.39604828 prediction 0.464578638815915 Functional Gain - LYN ENSG00000254087 CDS Human protein_coding chr8:56912007 chr8:56912010 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_114222 0 0 1 0 2 LYN chr8:56911977 3'AG 56911977 Downstream 34bp
chr8 56912010 56912010 1 + A G HNSC 56912007 + 56911987 56912027 41 CCCTATTAAGTGGACGGCTCCAGAAGCAATCAACTTTGGAT CCCTATTAAGTGGACGGCTCCAGGAGCAATCAACTTTGGAT < 41bp 0.499194484390898 0.732289319407957 0.29070914 0.39604828 prediction 0.464578638815915 Functional Gain - LYN ENSG00000254087 CDS Human protein_coding chr8:56912007 chr8:56912010 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_114222 0 0 1 0 2 LYN chr8:56912108 5'GT 56912108 Upstream 99bp
chr19 38780811 38780811 1 + C A UCEC 38780807 + 38780787 38780827 41 GCCTTGCCGTGCATCCTTCCCACGCTGGTACTTTGACGTGG GCCTTGCCGTGCATCCTTCCCACGATGGTACTTTGACGTGG < 41bp 0.70457143327557 0.936860459371197 0.067380965 0.08747214 prediction 0.464578052191253 Functional Gain - SPINT2 ENSG00000167642;ENSG00000267748 CDS Human other chr19:38780807 chr19:38780811 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_114223 0 0 1 0 1 SPINT2 chr19:38780759 3'AG 38780759 Downstream 53bp
chr1 47564910 47564910 1 + C T rs202100105 47564909 + 47564889 47564929 41 CCTGAGCATCAGCAGAGATGCCGAGATGAAATCAGGGAACT CCTGAGCATCAGCAGAGATGCTGAGATGAAATCAGGGAACT < 41bp 0.496971410594641 0.7322837643984 0.41573387 0.4434723 prediction 0.464567528796799 Functional Gain - CYP4Z1 ENSG00000186160 CDS Human protein_coding chr1:47564909 chr1:47564910 stopgain 0.172 0 22 hm5C_associated_SNPs_114224 0 0 0 0 1 CYP4Z1 chr1:47564956 5'GT 47564956 Upstream 47bp
chr5 167882523 167882523 1 + C T SKCM 167882522 + 167882502 167882542 41 CCCCAGAGCCAGTACGTGTGCCGGGTAAGTGAGCGTGCGGC CCCCAGAGCCAGTACGTGTGCTGGGTAAGTGAGCGTGCGGC < 41bp 0.527471185317694 0.759750688184165 0.66330856 0.3919555 prediction 0.464559005732942 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167882522 chr5:167882523 nonsynonymous SNV 0.947 4 22 hm5C_associated_SNPs_114226 0 0 0 0 1 WWC1 chr5:167882525 5'GT 167882525 Upstream 3bp
chr10 75520488 75520488 1 + C T UCEC 75520487 + 75520467 75520507 41 TCAGGTTCCTTCGGACCAGCCCGGGGCCCTCAGTCTAATTA TCAGGTTCCTTCGGACCAGCCTGGGGCCCTCAGTCTAATTA < 41bp 0.518684849285948 0.750959617168553 0.8634439 0.38805145 prediction 0.464549535765211 Functional Gain - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75520487 chr10:75520488 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_114229 0 0 1 0 1 SEC24C chr10:75520471 3'AG 75520471 Downstream 18bp
chr4 77940386 77940386 1 + C A HNSC 77940385 + 77940365 77940405 41 TGGCAACAAGATGGCAAAGGCCAGGCAGTACCCCTGGGGTG TGGCAACAAGATGGCAAAGGCAAGGCAGTACCCCTGGGGTG < 41bp 0.569998140593063 0.802264230402709 0.24610797 0.37243116 prediction 0.464532179619292 Functional Gain - SEPT11 ENSG00000138758 CDS Human protein_coding chr4:77940385 chr4:77940386 synonymous SNV . 0 22 hm5C_associated_SNPs_114232 0 0 1 0 1 SEPT11 chr4:77940318 3'AG 77940318 Downstream 69bp
chr15 101169707 101169707 1 + C T UCEC 101169706 + 101169686 101169726 41 CACTATGCAGCCATGCATGGCCGGGCCCGCATTGCACGCTT CACTATGCAGCCATGCATGGCTGGGCCCGCATTGCACGCTT < 41bp 0.516035296502754 0.748300077712622 0.28270248 0.25123423 prediction 0.464529562419737 Functional Gain - ASB7 ENSG00000183475 CDS Human protein_coding chr15:101169706 chr15:101169707 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_114234 0 0 1 0 1 ASB7 chr15:101169642 3'AG 101169642 Downstream 66bp
chr8 23117743 23117743 1 + C A STAD 23117742 + 23117722 23117762 41 TTGGATCTGCCTGACAACCCCCGCAATAGGCATTTTACCAA TTGGATCTGCCTGACAACCCCAGCAATAGGCATTTTACCAA < 41bp 0.547237767514081 0.779497871097349 0.14031297 0.4014585 prediction 0.464520207166534 Functional Gain - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23117742 chr8:23117743 nonsynonymous SNV 0.024 0 22 hm5C_associated_SNPs_114235 0 0 1 0 2 CHMP7 chr8:23117657 3'AG 23117657 Downstream 87bp
chr8 23117743 23117743 1 + C A STAD 23117742 + 23117722 23117762 41 TTGGATCTGCCTGACAACCCCCGCAATAGGCATTTTACCAA TTGGATCTGCCTGACAACCCCAGCAATAGGCATTTTACCAA < 41bp 0.547237767514081 0.779497871097349 0.14031297 0.4014585 prediction 0.464520207166534 Functional Gain - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23117742 chr8:23117743 nonsynonymous SNV 0.024 0 22 hm5C_associated_SNPs_114235 0 0 1 0 2 CHMP7 chr8:23117836 5'GT 23117836 Upstream 94bp
chr15 45249164 45249164 1 + A G rs530116165 45249161 + 45249141 45249181 41 TTCAGCTGTGATGCCTCGCACCCAGACACGCTGAGGTACTG TTCAGCTGTGATGCCTCGCACCCGGACACGCTGAGGTACTG < 41bp 0.511037418855378 0.743296524702036 0.046173483 0.23677263 prediction 0.464518211693316 Functional Gain - TERB2 ENSG00000167014 CDS Human protein_coding chr15:45249161 chr15:45249164 synonymous SNV . 0 24 hm5C_associated_SNPs_114236 0 0 0 0 2 TERB2 chr15:45249094 3'AG 45249094 Downstream 71bp
chr15 45249164 45249164 1 + A G rs530116165 45249161 + 45249141 45249181 41 TTCAGCTGTGATGCCTCGCACCCAGACACGCTGAGGTACTG TTCAGCTGTGATGCCTCGCACCCGGACACGCTGAGGTACTG < 41bp 0.511037418855378 0.743296524702036 0.046173483 0.23677263 prediction 0.464518211693316 Functional Gain - TERB2 ENSG00000167014 CDS Human protein_coding chr15:45249161 chr15:45249164 synonymous SNV . 0 24 hm5C_associated_SNPs_114236 0 0 0 0 2 TERB2 chr15:45249175 5'GT 45249175 Upstream 12bp
chr19 52800469 52800469 1 + C G rs560421543 52800468 + 52800448 52800488 41 CGCGTGGAGTGAAGGTCACGCCGCGGCGCGTGAGTTTCCCT CGCGTGGAGTGAAGGTCACGCGGCGGCGCGTGAGTTTCCCT < 41bp 0.556371730741782 0.788625582121097 0.25697738 0.7739432 prediction 0.46450770275863 Functional Gain - ZNF480 ENSG00000269102 ncRNA_intronic Human antisense chr19:52800468 chr19:52800469 . . 0 22 hm5C_associated_SNPs_114237 0 0 1 0 1 ZNF480 chr19:52800476 5'GT 52800476 Upstream 8bp
chr1 165619140 165619140 1 + T C SKCM 165619138 + 165619118 165619158 41 CTTCTAACTGGTGCTGCCAGCTTTATAATGGTGGCCCACCT CTTCTAACTGGTGCTGCCAGCTCTATAATGGTGGCCCACCT < 41bp 0.441724663106604 0.732246872752376 0.045708954 0.33071524 prediction 0.464493745504753 Functional Gain - MGST3 ENSG00000143198 CDS Human protein_coding chr1:165619138 chr1:165619140 nonsynonymous SNV 0.839 1 23 hm5C_associated_SNPs_114239 0 0 1 0 2 MGST3 chr1:165619078 3'AG 165619078 Downstream 63bp
chr1 165619140 165619140 1 + T C SKCM 165619138 + 165619118 165619158 41 CTTCTAACTGGTGCTGCCAGCTTTATAATGGTGGCCCACCT CTTCTAACTGGTGCTGCCAGCTCTATAATGGTGGCCCACCT < 41bp 0.441724663106604 0.732246872752376 0.045708954 0.33071524 prediction 0.464493745504753 Functional Gain - MGST3 ENSG00000143198 CDS Human protein_coding chr1:165619138 chr1:165619140 nonsynonymous SNV 0.839 1 23 hm5C_associated_SNPs_114239 0 0 1 0 2 MGST3 chr1:165619201 5'GT 165619201 Upstream 62bp
chr15 75042851 75042851 1 + C A LUAD 75042847 + 75042827 75042867 41 CTGCAGAGGTTCAAGGCCTTCAACCAGAGGTTCCTGTGGTT CTGCAGAGGTTCAAGGCCTTCAACAAGAGGTTCCTGTGGTT < 41bp 0.305592403123451 0.732231617227283 0.07180229 0.106558144 prediction 0.464463234454567 Functional Gain - CYP1A2 ENSG00000140505 CDS Human protein_coding chr15:75042847 chr15:75042851 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_114244 0 0 0 0 1 CYP1A2 chr15:75042910 5'GT 75042910 Upstream 60bp
chr4 42072563 42072563 1 + C A UCEC 42072559 + 42072539 42072579 41 TTAGGCAATCCACTGTATGACAGCCTAGGTTCTTTGGGTGT TTAGGCAATCCACTGTATGACAGCATAGGTTCTTTGGGTGT < 41bp 0.319375972290624 0.732230829401756 0.22341117 0.21215695 prediction 0.464461658803512 Functional Gain - SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42072559 chr4:42072563 nonsynonymous SNV 0.986 1 25 hm5C_associated_SNPs_114245 0 0 1 0 1 SLC30A9 chr4:42072543 3'AG 42072543 Downstream 21bp
chr1 156563293 156563293 1 + C T STAD 156563292 + 156563272 156563312 41 CGGGAACCGTTCCACAGCATCCTGAGTGTCCTGAAGGGACT CGGGAACCGTTCCACAGCATCTTGAGTGTCCTGAAGGGACT < 41bp 0.459687514535156 0.732230392302072 0.1957345 0.3357914 prediction 0.464460784604144 Functional Gain - NAXE ENSG00000163382 CDS Human protein_coding chr1:156563292 chr1:156563293 nonsynonymous SNV 0.977 1 22 hm5C_associated_SNPs_114246 0 0 1 0 3 NAXE chr1:156563200 3'AG 156563200 Downstream 94bp
chr1 156563293 156563293 1 + C T STAD 156563292 + 156563272 156563312 41 CGGGAACCGTTCCACAGCATCCTGAGTGTCCTGAAGGGACT CGGGAACCGTTCCACAGCATCTTGAGTGTCCTGAAGGGACT < 41bp 0.459687514535156 0.732230392302072 0.1957345 0.3357914 prediction 0.464460784604144 Functional Gain - NAXE ENSG00000163382 CDS Human protein_coding chr1:156563292 chr1:156563293 nonsynonymous SNV 0.977 1 22 hm5C_associated_SNPs_114246 0 0 1 0 3 NAXE chr1:156563256 3'AG 156563256 Downstream 38bp
chr1 156563293 156563293 1 + C T STAD 156563292 + 156563272 156563312 41 CGGGAACCGTTCCACAGCATCCTGAGTGTCCTGAAGGGACT CGGGAACCGTTCCACAGCATCTTGAGTGTCCTGAAGGGACT < 41bp 0.459687514535156 0.732230392302072 0.1957345 0.3357914 prediction 0.464460784604144 Functional Gain - NAXE ENSG00000163382 CDS Human protein_coding chr1:156563292 chr1:156563293 nonsynonymous SNV 0.977 1 22 hm5C_associated_SNPs_114246 0 0 1 0 3 NAXE chr1:156563347 5'GT 156563347 Upstream 55bp
chr20 2688624 2688624 1 + C T SKCM 2688623 + 2688603 2688643 41 ATGAGGGGCAGGACAAGAACCCCGAAATGTGCCGAGTGCTG ATGAGGGGCAGGACAAGAACCTCGAAATGTGCCGAGTGCTG < 41bp 0.569372174166818 0.801596859010897 0.19195089 0.9019204 prediction 0.464449369688158 Functional Gain - EBF4 ENSG00000088881 CDS Human protein_coding chr20:2688623 chr20:2688624 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_114247 0 0 0 0 2 EBF4 chr20:2688593 3'AG 2688593 Downstream 32bp
chr20 2688624 2688624 1 + C T SKCM 2688623 + 2688603 2688643 41 ATGAGGGGCAGGACAAGAACCCCGAAATGTGCCGAGTGCTG ATGAGGGGCAGGACAAGAACCTCGAAATGTGCCGAGTGCTG < 41bp 0.569372174166818 0.801596859010897 0.19195089 0.9019204 prediction 0.464449369688158 Functional Gain - EBF4 ENSG00000088881 CDS Human protein_coding chr20:2688623 chr20:2688624 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_114247 0 0 0 0 2 EBF4 chr20:2688666 5'GT 2688666 Upstream 43bp
chr7 156759022 156759022 1 + C A UCEC 156759018 + 156758998 156759038 41 ATTCACGTTCTCATGGATTGCTGCCTTCAAGAGAAAACTTA ATTCACGTTCTCATGGATTGCTGCATTCAAGAGAAAACTTA < 41bp 0.30332260184634 0.732224523493329 0.04286307 0.1078465 prediction 0.464449046986658 Functional Gain - NOM1 ENSG00000146909 CDS Human protein_coding chr7:156759018 chr7:156759022 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_114248 0 0 1 0 2 NOM1 chr7:156758964 3'AG 156758964 Downstream 59bp
chr7 156759022 156759022 1 + C A UCEC 156759018 + 156758998 156759038 41 ATTCACGTTCTCATGGATTGCTGCCTTCAAGAGAAAACTTA ATTCACGTTCTCATGGATTGCTGCATTCAAGAGAAAACTTA < 41bp 0.30332260184634 0.732224523493329 0.04286307 0.1078465 prediction 0.464449046986658 Functional Gain - NOM1 ENSG00000146909 CDS Human protein_coding chr7:156759018 chr7:156759022 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_114248 0 0 1 0 2 NOM1 chr7:156759096 5'GT 156759096 Upstream 75bp
chr20 3025156 3025156 1 + T C rs201761723 3025154 + 3025134 3025174 41 ACTGGTCCCATGGCTGGTACCCTGGAGGAAAGCGAGCCCTC ACTGGTCCCATGGCTGGTACCCCGGAGGAAAGCGAGCCCTC < 41bp 0.563500788578893 0.795724706719316 0.2263236 0.4280058 prediction 0.464447836280845 Functional Gain - GNRH2 ENSG00000125787 CDS Human protein_coding chr20:3025154 chr20:3025156 synonymous SNV . 0 23 hm5C_associated_SNPs_114249 0 0 0 0 2 GNRH2 chr20:3025059 3'AG 3025059 Downstream 98bp
chr20 3025156 3025156 1 + T C rs201761723 3025154 + 3025134 3025174 41 ACTGGTCCCATGGCTGGTACCCTGGAGGAAAGCGAGCCCTC ACTGGTCCCATGGCTGGTACCCCGGAGGAAAGCGAGCCCTC < 41bp 0.563500788578893 0.795724706719316 0.2263236 0.4280058 prediction 0.464447836280845 Functional Gain - GNRH2 ENSG00000125787 CDS Human protein_coding chr20:3025154 chr20:3025156 synonymous SNV . 0 23 hm5C_associated_SNPs_114249 0 0 0 0 2 GNRH2 chr20:3025214 5'GT 3025214 Upstream 59bp
chr19 55333103 55333103 1 + C A CESC 55333102 + 55333082 55333122 41 GTGACCTTGTCCTGTAGCTCCCGGAGCTCCTATGACATGTA GTGACCTTGTCCTGTAGCTCCAGGAGCTCCTATGACATGTA < 41bp 0.565109860487891 0.797330718315114 0.87821066 0.90864027 prediction 0.464441715654447 Functional Gain - KIR3DL1 ENSG00000167633 CDS Human protein_coding chr19:55333102 chr19:55333103 synonymous SNV . 0 22 hm5C_associated_SNPs_114251 0 0 0 0 1 KIR3DL1 chr19:55333020 3'AG 55333020 Downstream 84bp
chrX 3002316 3002316 1 + C T STAD 3002315 + 3002295 3002335 41 CAAGGCTTGAACTGCGACTCCCGAAGTGACCAGTGCCACCA CAAGGCTTGAACTGCGACTCCTGAAGTGACCAGTGCCACCA < 41bp 0.543795262954408 0.776004329704516 0.32075137 0.21006492 prediction 0.464418133500217 Functional Gain - ARSF ENSG00000062096 CDS Human protein_coding chrX:3002315 chrX:3002316 stopgain 0.055 0 22 hm5C_associated_SNPs_114254 0 0 0 0 1 ARSF chrX:3002284 3'AG 3002284 Downstream 33bp
chr12 132281756 132281756 1 + C T UCEC 132281755 + 132281735 132281775 41 GAAGAAGAAGAAGAGGCGGTCCCGGTCGCGGACCAAGTCCA GAAGAAGAAGAAGAGGCGGTCTCGGTCGCGGACCAAGTCCA < 41bp 0.505678911818196 0.737885637370869 0.37286764 0.3396787 prediction 0.464413451105346 Functional Gain - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132281755 chr12:132281756 synonymous SNV . 0 22 hm5C_associated_SNPs_114256 0 0 1 0 1 SFSWAP chr12:132281723 3'AG 132281723 Downstream 34bp
chr19 51295389 51295389 1 + C A rs146503450 51295388 + 51295368 51295408 41 CGAGCTGCTGCGGGAGGCCACCGAGGCCGCCGAGTACCAGG CGAGCTGCTGCGGGAGGCCACAGAGGCCGCCGAGTACCAGG < 41bp 0.579380876462123 0.811585825452416 0.9078159 0.9087707 prediction 0.464409897980586 Functional Gain - ACPT ENSG00000142513 CDS Human protein_coding chr19:51295388 chr19:51295389 synonymous SNV . 0 22 hm5C_associated_SNPs_114258 0 0 0 0 2 ACPT chr19:51295330 3'AG 51295330 Downstream 60bp
chr19 51295389 51295389 1 + C A rs146503450 51295388 + 51295368 51295408 41 CGAGCTGCTGCGGGAGGCCACCGAGGCCGCCGAGTACCAGG CGAGCTGCTGCGGGAGGCCACAGAGGCCGCCGAGTACCAGG < 41bp 0.579380876462123 0.811585825452416 0.9078159 0.9087707 prediction 0.464409897980586 Functional Gain - ACPT ENSG00000142513 CDS Human protein_coding chr19:51295388 chr19:51295389 synonymous SNV . 0 22 hm5C_associated_SNPs_114258 0 0 0 0 2 ACPT chr19:51295428 5'GT 51295428 Upstream 40bp
chr12 109839033 109839033 1 + C T UCEC 109839032 + 109839012 109839052 41 GAAGAGGAGCGCCTGTCTTACCTGGGACTCGAGCGAGACCC GAAGAGGAGCGCCTGTCTTACTTGGGACTCGAGCGAGACCC < 41bp 0.485070699156786 0.732198256353187 0.36835843 0.2899233 prediction 0.464396512706374 Functional Gain - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109839032 chr12:109839033 synonymous SNV . 0 22 hm5C_associated_SNPs_114262 0 0 0 0 1 MYO1H chr12:109839077 5'GT 109839077 Upstream 45bp
chr12 44693453 44693453 1 + C A UCEC 44693452 + 44693432 44693472 41 GCTGAATCGGGGATTTTTGCCCAGTGATGAAGTTTCCAGAG GCTGAATCGGGGATTTTTGCCAAGTGATGAAGTTTCCAGAG < 41bp 0.505624160762534 0.737818093893037 0.43567726 0.911955 prediction 0.464387866261006 Functional Gain - TMEM117 ENSG00000139173 CDS Human protein_coding chr12:44693452 chr12:44693453 synonymous SNV . 0 22 hm5C_associated_SNPs_114263 0 0 0 0 2 TMEM117 chr12:44693363 3'AG 44693363 Downstream 91bp
chr12 44693453 44693453 1 + C A UCEC 44693452 + 44693432 44693472 41 GCTGAATCGGGGATTTTTGCCCAGTGATGAAGTTTCCAGAG GCTGAATCGGGGATTTTTGCCAAGTGATGAAGTTTCCAGAG < 41bp 0.505624160762534 0.737818093893037 0.43567726 0.911955 prediction 0.464387866261006 Functional Gain - TMEM117 ENSG00000139173 CDS Human protein_coding chr12:44693452 chr12:44693453 synonymous SNV . 0 22 hm5C_associated_SNPs_114263 0 0 0 0 2 TMEM117 chr12:44693522 5'GT 44693522 Upstream 70bp
chr17 4060250 4060250 1 + C T LUSC 4060249 + 4060229 4060269 41 CTGCGTGTGTGTGAGAACCACCGGCCCCCCTAGTGGCCAGA CTGCGTGTGTGTGAGAACCACTGGCCCCCCTAGTGGCCAGA < 41bp 0.498967600426098 0.732190595693876 0.14604628 0.08703536 prediction 0.464381191387751 Functional Gain - CYB5D2 ENSG00000167740 CDS Human protein_coding chr17:4060249 chr17:4060250 synonymous SNV . 0 22 hm5C_associated_SNPs_114265 0 0 1 0 1 CYB5D2 chr17:4060160 3'AG 4060160 Downstream 91bp
chr6 43227352 43227352 1 + C T SKCM 43227351 + 43227331 43227371 41 CCCCCCAGACTCCCCCACAACCCCAGTCCGTTCTCTGCGCT CCCCCCAGACTCCCCCACAACTCCAGTCCGTTCTCTGCGCT < 41bp 0.44463826451984 0.732183885097634 0.62133616 0.9307474 prediction 0.464367770195269 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43227351 chr6:43227352 synonymous SNV . 0 22 hm5C_associated_SNPs_114267 0 0 0 0 2 TTBK1 chr6:43227269 3'AG 43227269 Downstream 84bp
chr6 43227352 43227352 1 + C T SKCM 43227351 + 43227331 43227371 41 CCCCCCAGACTCCCCCACAACCCCAGTCCGTTCTCTGCGCT CCCCCCAGACTCCCCCACAACTCCAGTCCGTTCTCTGCGCT < 41bp 0.44463826451984 0.732183885097634 0.62133616 0.9307474 prediction 0.464367770195269 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43227351 chr6:43227352 synonymous SNV . 0 22 hm5C_associated_SNPs_114267 0 0 0 0 2 TTBK1 chr6:43227444 5'GT 43227444 Upstream 93bp
chr19 5661818 5661818 1 + C T UCEC 5661817 + 5661797 5661837 41 CGGCGGCCCTACGACCTGGACCGGTAAGCAGATCCATGCTG CGGCGGCCCTACGACCTGGACTGGTAAGCAGATCCATGCTG < 41bp 0.503248956689929 0.735431822317692 0.08304849 0.11626598 prediction 0.464365731255527 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5661817 chr19:5661818 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_114268 0 0 1 0 1 SAFB chr19:5661819 5'GT 5661819 Upstream 2bp
chr8 143623372 143623372 1 + C A rs61755064 143623371 + 143623351 143623391 41 ACTGAAGCGGCCGTCTCTGCCCGAGGAGGAGAAGCTGAAGC ACTGAAGCGGCCGTCTCTGCCAGAGGAGGAGAAGCTGAAGC < 41bp 0.472611639915135 0.732181929142277 0.5310919 0.92184705 prediction 0.464363858284553 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143623371 chr8:143623372 synonymous SNV . 0 22 hm5C_associated_SNPs_114269 0 0 0 0 1 ADGRB1 chr8:143623302 3'AG 143623302 Downstream 71bp
chr2 95713755 95713755 1 + C G COAD 95713751 + 95713731 95713771 41 GTGGCCTCCTCCCTGGTGCCCTGGCCCCTGGTCCAGGGCTG GTGGCCTCCTCCCTGGTGCCCTGGGCCCTGGTCCAGGGCTG < 41bp 0.630758099322019 0.862926398871707 0.24122465 0.29523855 prediction 0.464336599099374 Functional Gain - MAL ENSG00000172005 CDS Human protein_coding chr2:95713751 chr2:95713755 nonsynonymous SNV 0.115 0 25 hm5C_associated_SNPs_114272 0 0 0 0 1 MAL chr2:95713704 3'AG 95713704 Downstream 52bp
chr5 132086601 132086601 1 + C T UCEC 132086600 + 132086580 132086620 41 ACTATGGCTCTGACTATTCCCCGAATGAGCTGCTGAGGATG ACTATGGCTCTGACTATTCCCTGAATGAGCTGCTGAGGATG < 41bp 0.560964346081237 0.793127598111081 0.06851578 0.06645486 prediction 0.464326504059688 Functional Gain - CCNI2 ENSG00000205089 CDS Human protein_coding chr5:132086600 chr5:132086601 nonsynonymous SNV 0.669 3 22 hm5C_associated_SNPs_114273 0 0 0 0 2 CCNI2 chr5:132086549 3'AG 132086549 Downstream 53bp
chr5 132086601 132086601 1 + C T UCEC 132086600 + 132086580 132086620 41 ACTATGGCTCTGACTATTCCCCGAATGAGCTGCTGAGGATG ACTATGGCTCTGACTATTCCCTGAATGAGCTGCTGAGGATG < 41bp 0.560964346081237 0.793127598111081 0.06851578 0.06645486 prediction 0.464326504059688 Functional Gain - CCNI2 ENSG00000205089 CDS Human protein_coding chr5:132086600 chr5:132086601 nonsynonymous SNV 0.669 3 22 hm5C_associated_SNPs_114273 0 0 0 0 2 CCNI2 chr5:132086689 5'GT 132086689 Upstream 89bp
chr1 7889967 7889967 1 + C T SKCM 7889966 + 7889946 7889986 41 CACTGTCCACGGGGTCACCTCCCAGGGAGAATCCATCCCAT CACTGTCCACGGGGTCACCTCTCAGGGAGAATCCATCCCAT < 41bp 0.47904128825253 0.732159433002877 0.32894433 0.20989066 prediction 0.464318866005754 Functional Gain - PER3 ENSG00000049246 CDS Human protein_coding chr1:7889966 chr1:7889967 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_114275 0 0 0 0 2 PER3 chr1:7889894 3'AG 7889894 Downstream 74bp
chr1 7889967 7889967 1 + C T SKCM 7889966 + 7889946 7889986 41 CACTGTCCACGGGGTCACCTCCCAGGGAGAATCCATCCCAT CACTGTCCACGGGGTCACCTCTCAGGGAGAATCCATCCCAT < 41bp 0.47904128825253 0.732159433002877 0.32894433 0.20989066 prediction 0.464318866005754 Functional Gain - PER3 ENSG00000049246 CDS Human protein_coding chr1:7889966 chr1:7889967 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_114275 0 0 0 0 2 PER3 chr1:7889897 3'AG 7889897 Downstream 71bp
chr1 55172186 55172186 1 + C T OV 55172185 + 55172165 55172205 41 AAGAACTCACGGGCCTCCCTCCGGAAGTGCTCAGTCATGTT AAGAACTCACGGGCCTCCCTCTGGAAGTGCTCAGTCATGTT < 41bp 0.562806713004289 0.794963644597245 0.8570535 0.8173033 prediction 0.464313863185913 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55172185 chr1:55172186 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_114276 0 0 0 0 2 MROH7 chr1:55172108 3'AG 55172108 Downstream 79bp
chr1 55172186 55172186 1 + C T OV 55172185 + 55172165 55172205 41 AAGAACTCACGGGCCTCCCTCCGGAAGTGCTCAGTCATGTT AAGAACTCACGGGCCTCCCTCTGGAAGTGCTCAGTCATGTT < 41bp 0.562806713004289 0.794963644597245 0.8570535 0.8173033 prediction 0.464313863185913 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55172185 chr1:55172186 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_114276 0 0 0 0 2 MROH7 chr1:55172210 5'GT 55172210 Upstream 25bp
chr1 207236057 207236057 1 + C A STAD 207236056 + 207236036 207236076 41 AATGAGGAGGCCATGAAGATCCGCAAGTGAGTCTTGTTTAA AATGAGGAGGCCATGAAGATCAGCAAGTGAGTCTTGTTTAA < 41bp 0.558400113974114 0.790554377305211 0.20944396 0.25571036 prediction 0.464308526662194 Functional Gain - PFKFB2 ENSG00000123836 CDS Human protein_coding chr1:207236056 chr1:207236057 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_114277 0 0 0 0 2 PFKFB2 chr1:207235965 3'AG 207235965 Downstream 93bp
chr1 207236057 207236057 1 + C A STAD 207236056 + 207236036 207236076 41 AATGAGGAGGCCATGAAGATCCGCAAGTGAGTCTTGTTTAA AATGAGGAGGCCATGAAGATCAGCAAGTGAGTCTTGTTTAA < 41bp 0.558400113974114 0.790554377305211 0.20944396 0.25571036 prediction 0.464308526662194 Functional Gain - PFKFB2 ENSG00000123836 CDS Human protein_coding chr1:207236056 chr1:207236057 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_114277 0 0 0 0 2 PFKFB2 chr1:207236061 5'GT 207236061 Upstream 5bp
chr1 16377497 16377497 1 + C T STAD 16377496 + 16377476 16377516 41 TGTGGTGGGAATGGTACCACCCGCGGTTCACCATCTTTGGG TGTGGTGGGAATGGTACCACCTGCGGTTCACCATCTTTGGG < 41bp 0.544321572652967 0.776465251979355 0.4228796 0.28050393 prediction 0.464287358652776 Functional Gain - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16377496 chr1:16377497 nonsynonymous SNV 0.468 5 22 hm5C_associated_SNPs_114279 0 0 0 0 1 CLCNKB chr1:16377543 5'GT 16377543 Upstream 47bp
chr16 84779244 84779244 1 + C T UCEC 84779243 + 84779223 84779263 41 AAGTCAAAGAAGGGCTTGTTCCGGTTTCAGAGGATCCTGTA AAGTCAAAGAAGGGCTTGTTCTGGTTTCAGAGGATCCTGTA < 41bp 0.497434532438515 0.732143083909378 0.41218302 0.123639226 prediction 0.464286167818755 Functional Gain - USP10 ENSG00000103194 CDS Human protein_coding chr16:84779243 chr16:84779244 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_114280 0 0 1 0 1 USP10 chr16:84779279 5'GT 84779279 Upstream 36bp
chr7 128457827 128457827 1 + A G UCEC 128457824 + 128457804 128457844 41 TGTTGCAGTCATCCCCTACCCCCAATCCCCCCATCTTCTCC TGTTGCAGTCATCCCCTACCCCCGATCCCCCCATCTTCTCC < 41bp 0.516892823780079 0.749029785390787 0.049931496 0.035746276 prediction 0.464273923221417 Functional Gain - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128457824 chr7:128457827 nonsynonymous SNV 0.882 0 24 hm5C_associated_SNPs_114284 0 0 1 0 2 CCDC136 chr7:128457812 3'AG 128457812 Downstream 16bp
chr7 128457827 128457827 1 + A G UCEC 128457824 + 128457804 128457844 41 TGTTGCAGTCATCCCCTACCCCCAATCCCCCCATCTTCTCC TGTTGCAGTCATCCCCTACCCCCGATCCCCCCATCTTCTCC < 41bp 0.516892823780079 0.749029785390787 0.049931496 0.035746276 prediction 0.464273923221417 Functional Gain - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128457824 chr7:128457827 nonsynonymous SNV 0.882 0 24 hm5C_associated_SNPs_114284 0 0 1 0 2 CCDC136 chr7:128457918 5'GT 128457918 Upstream 92bp
chr17 34956424 34956424 1 + C T UCEC 34956423 + 34956403 34956443 41 TCTCAAACCCGAGGATGTGGCCGAGGCTGTTATCTACGTCC TCTCAAACCCGAGGATGTGGCTGAGGCTGTTATCTACGTCC < 41bp 0.502536278466009 0.73467303818955 0.29121912 0.25183028 prediction 0.464273519447082 Functional Gain - DHRS11 ENSG00000108272 CDS Human other chr17:34956423 chr17:34956424 synonymous SNV . 0 22 hm5C_associated_SNPs_114285 0 0 1 0 1 DHRS11 chr17:34956466 5'GT 34956466 Upstream 43bp
chr1 210334142 210334142 1 + C T ESCA 210334141 + 210334121 210334161 41 TCCAAATGCAAGACATCCATCCGCAGAGGGCAGCCAAATCC TCCAAATGCAAGACATCCATCTGCAGAGGGCAGCCAAATCC < 41bp 0.559481143736094 0.79161347873631 0.13479805 0.16027758 prediction 0.464264670000431 Functional Gain - SYT14 ENSG00000143469 CDS Human protein_coding chr1:210334141 chr1:210334142 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_114289 0 0 0 0 1 SYT14 chr1:210334074 3'AG 210334074 Downstream 69bp
chr3 10967745 10967745 1 + C T SKCM 10967744 + 10967724 10967764 41 GGTCACCATGATGCCTCTCTCCCCGCTGTGGGCCACCTTGT GGTCACCATGATGCCTCTCTCTCCGCTGTGGGCCACCTTGT < 41bp 0.524694072259158 0.756825048995653 0.24836358 0.24622273 prediction 0.46426195347299 Functional Gain - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10967744 chr3:10967745 synonymous SNV . 0 22 hm5C_associated_SNPs_114293 0 0 0 0 2 SLC6A11 chr3:10967690 3'AG 10967690 Downstream 56bp
chr3 10967745 10967745 1 + C T SKCM 10967744 + 10967724 10967764 41 GGTCACCATGATGCCTCTCTCCCCGCTGTGGGCCACCTTGT GGTCACCATGATGCCTCTCTCTCCGCTGTGGGCCACCTTGT < 41bp 0.524694072259158 0.756825048995653 0.24836358 0.24622273 prediction 0.46426195347299 Functional Gain - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10967744 chr3:10967745 synonymous SNV . 0 22 hm5C_associated_SNPs_114293 0 0 0 0 2 SLC6A11 chr3:10967802 5'GT 10967802 Upstream 58bp
chr19 49261265 49261265 1 + C A KIRP 49261264 + 49261244 49261284 41 AATGTTTACCAGTCCGAAGCCCACGGCCTCCCGCTGCACCT AATGTTTACCAGTCCGAAGCCAACGGCCTCCCGCTGCACCT < 41bp 0.567150918543348 0.799275592468709 0.100768745 0.107102156 prediction 0.464249347850721 Functional Gain - FGF21 ENSG00000105550 CDS Human protein_coding chr19:49261264 chr19:49261265 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_114298 0 0 0 0 1 FGF21 chr19:49261187 3'AG 49261187 Downstream 79bp
chr22 45243898 45243898 1 + C A UCEC 45243894 + 45243874 45243914 41 TCCGGAGATCCGCCAGCGTGCAGACCGTCCGCGAGATCCAG TCCGGAGATCCGCCAGCGTGCAGAACGTCCGCGAGATCCAG < 41bp 0.319255246662502 0.732119937203493 0.43071687 0.5648287 prediction 0.464239874406987 Functional Gain - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45243894 chr22:45243898 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_114299 0 0 1 0 2 ARHGAP8;PRR5-ARHGAP8 chr22:45243853 3'AG 45243853 Downstream 46bp
chr22 45243898 45243898 1 + C A UCEC 45243894 + 45243874 45243914 41 TCCGGAGATCCGCCAGCGTGCAGACCGTCCGCGAGATCCAG TCCGGAGATCCGCCAGCGTGCAGAACGTCCGCGAGATCCAG < 41bp 0.319255246662502 0.732119937203493 0.43071687 0.5648287 prediction 0.464239874406987 Functional Gain - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45243894 chr22:45243898 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_114299 0 0 1 0 2 ARHGAP8;PRR5-ARHGAP8 chr22:45243930 5'GT 45243930 Upstream 33bp
chr19 47876048 47876048 1 + C T rs562906654 47876047 + 47876027 47876067 41 GCCTGTGCTCACCATCGCAGCCGCACTTAGCGTCCAGTCGC GCCTGTGCTCACCATCGCAGCTGCACTTAGCGTCCAGTCGC < 41bp 0.564387058456532 0.796505007878849 0.17127901 0.2183533 prediction 0.464235898844633 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47876047 chr19:47876048 synonymous SNV . 0 22 hm5C_associated_SNPs_114301 0 0 1 0 1 DHX34 chr19:47875987 3'AG 47875987 Downstream 62bp
chrX 148796188 148796188 1 + C A LUAD 148796187 + 148796167 148796207 41 CTTCCAGTCAACAGAAAGAGCCCCATATGGTCCACAACTAC CTTCCAGTCAACAGAAAGAGCACCATATGGTCCACAACTAC < 41bp 0.558726758064668 0.790842729790566 0.41148263 0.58679545 prediction 0.464231943451798 Functional Gain - MAGEA11 ENSG00000185247 CDS Human protein_coding chrX:148796187 chrX:148796188 synonymous SNV . 0 22 hm5C_associated_SNPs_114303 0 0 0 0 2 MAGEA11 chrX:148796141 3'AG 148796141 Downstream 48bp
chrX 148796188 148796188 1 + C A LUAD 148796187 + 148796167 148796207 41 CTTCCAGTCAACAGAAAGAGCCCCATATGGTCCACAACTAC CTTCCAGTCAACAGAAAGAGCACCATATGGTCCACAACTAC < 41bp 0.558726758064668 0.790842729790566 0.41148263 0.58679545 prediction 0.464231943451798 Functional Gain - MAGEA11 ENSG00000185247 CDS Human protein_coding chrX:148796187 chrX:148796188 synonymous SNV . 0 22 hm5C_associated_SNPs_114303 0 0 0 0 2 MAGEA11 chrX:148796236 5'GT 148796236 Upstream 49bp
chr3 14964650 14964650 1 - A C SKCM 14964653 - 14964633 14964673 41 GGCCCGGGACAGCCCTGCCCCGCTTCTTCAGCTCCCCGAAG GGCCCGGGACAGCCCTGCCCCGCGTCTTCAGCTCCCCGAAG < 41bp 0.337072895251853 0.732115850718416 0.036135167 0.22235551 prediction 0.464231701436832 Functional Gain - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14964653 chr3:14964650 nonsynonymous SNV 0.821 3 24 hm5C_associated_SNPs_114304 0 0 0 0 1 FGD5 chr3:14964598 5'GT 14964598 Upstream 53bp
chr1 898782 898782 1 + C G BLCA 898781 + 898761 898801 41 CCGTGACTAACACGTGGCAGCCGGAGGTGTCCATGGGCACA CCGTGACTAACACGTGGCAGCGGGAGGTGTCCATGGGCACA < 41bp 0.636730875022715 0.868846693164892 0.90948784 0.9226307 prediction 0.464231636284353 Functional Gain - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:898781 chr1:898782 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_114305 0 0 0 0 1 KLHL17 chr1:898717 3'AG 898717 Downstream 66bp
chr16 66420781 66420781 1 + C T UCEC 66420780 + 66420760 66420800 41 GAATATGTGGGCAAGGTCTTCCGGGTCGATGCAGAGACAGG GAATATGTGGGCAAGGTCTTCTGGGTCGATGCAGAGACAGG < 41bp 0.53036270600481 0.762473385530953 0.45862195 0.531624 prediction 0.464221359052287 Functional Gain - CDH5 ENSG00000179776 CDS Human protein_coding chr16:66420780 chr16:66420781 nonsynonymous SNV 0.208 2 22 hm5C_associated_SNPs_114307 0 0 0 0 1 CDH5 chr16:66420712 3'AG 66420712 Downstream 70bp
chr1 156883891 156883891 1 + T C rs74116911 156883889 + 156883869 156883909 41 AGCAGCCCAGCCCCCTGATCCATGGTGAGCCCTCCCTCTCC AGCAGCCCAGCCCCCTGATCCACGGTGAGCCCTCCCTCTCC < 41bp 0.553558153374422 0.785666593251224 0.76923585 0.8893648 prediction 0.464216879753605 Functional Gain - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156883889 chr1:156883891 synonymous SNV . 0 23 hm5C_associated_SNPs_114309 0 0 0 0 1 PEAR1 chr1:156883892 5'GT 156883892 Upstream 2bp
chr17 17997252 17997252 1 + C T STAD 17997251 + 17997231 17997271 41 GTCATGAAGTCGGGTGATGCCCGTGTGGCGCTGATTGGATT GTCATGAAGTCGGGTGATGCCTGTGTGGCGCTGATTGGATT < 41bp 0.480954404363147 0.732106347645362 0.101017356 0.07704055 prediction 0.464212695290724 Functional Gain - DRG2 ENSG00000108591 CDS Human protein_coding chr17:17997251 chr17:17997252 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_114311 0 0 1 0 1 DRG2 chr17:17997287 5'GT 17997287 Upstream 36bp
chr17 78059989 78059989 1 + T C UCEC 78059987 + 78059967 78060007 41 TCCAAGAAGGAGCTCCACATCATGGAGCAGAAGAAACTACG TCCAAGAAGGAGCTCCACATCACGGAGCAGAAGAAACTACG < 41bp 0.47652890882146 0.73210150918122 0.45566866 0.79926413 prediction 0.464203018362441 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78059987 chr17:78059989 nonsynonymous SNV 0.641 1 23 hm5C_associated_SNPs_114315 0 0 0 0 1 CCDC40 chr17:78060015 5'GT 78060015 Upstream 27bp
chr5 41934342 41934342 1 + C A UCEC 41934341 + 41934321 41934361 41 GAAGCCGGTACAGTGTGATTCCACAGATTCAAAAAGTGTGT GAAGCCGGTACAGTGTGATTCAACAGATTCAAAAAGTGTGT < 41bp 0.500709675380255 0.732810860472352 0.05377361 0.057826728 prediction 0.464202370184195 Functional Gain - FBXO4 ENSG00000151876 CDS Human protein_coding chr5:41934341 chr5:41934342 nonsynonymous SNV 0.991 4 22 hm5C_associated_SNPs_114316 0 0 1 0 1 FBXO4 chr5:41934410 5'GT 41934410 Upstream 69bp
chr15 63571483 63571483 1 + T G UCEC 63571480 + 63571460 63571500 41 CTGATCTTTGGAGCGTTTGTCTCTGTCTATATCCAAGAAAT CTGATCTTTGGAGCGTTTGTCTCGGTCTATATCCAAGAAAT < 41bp 0.353169800965772 0.732101116484537 0.22024274 0.43577302 prediction 0.464202232969075 Functional Gain - APH1B ENSG00000138613 CDS Human protein_coding chr15:63571480 chr15:63571483 synonymous SNV . 0 24 hm5C_associated_SNPs_114317 0 0 0 0 1 APH1B chr15:63571530 5'GT 63571530 Upstream 48bp
chr1 19062163 19062163 1 + C T STAD 19062162 + 19062142 19062182 41 GCAACCCCAGTGCGGTGCCCCCGCAGCCACAGGCTGACTTC GCAACCCCAGTGCGGTGCCCCTGCAGCCACAGGCTGACTTC < 41bp 0.568595163403321 0.800684211860459 0.03912601 0.13324302 prediction 0.464178096914276 Functional Gain - PAX7 ENSG00000009709 CDS Human protein_coding chr1:19062162 chr1:19062163 nonsynonymous SNV 0.723 1 22 hm5C_associated_SNPs_114320 0 0 0 0 1 PAX7 chr1:19062126 3'AG 19062126 Downstream 38bp
chr16 84494274 84494274 1 + C A COAD 84494273 + 84494253 84494293 41 GGAGCAGCTTGGGGGTAGAGCCCGTTGACAAAGACGCCTTC GGAGCAGCTTGGGGGTAGAGCACGTTGACAAAGACGCCTTC < 41bp 0.469874008416373 0.732084648487179 0.32226205 0.37278932 prediction 0.464169296974358 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84494273 chr16:84494274 nonsynonymous SNV 0.020 5 22 hm5C_associated_SNPs_114321 0 0 0 0 1 ATP2C2 chr16:84494260 3'AG 84494260 Downstream 15bp
chr9 140083669 140083669 1 + C A SKCM 140083665 + 140083645 140083685 41 CCTGGCACGCAAGATTGCCTCTCGCAACGAGTTCGACCGGA CCTGGCACGCAAGATTGCCTCTCGAAACGAGTTCGACCGGA < 41bp 0.705128921660292 0.9372019905415 0.3594744 0.94425577 prediction 0.464146137762417 Functional Gain - SSNA1 ENSG00000176101 CDS Human protein_coding chr9:140083665 chr9:140083669 synonymous SNV . 0 25 hm5C_associated_SNPs_114323 0 0 1 0 1 SSNA1 chr9:140083717 5'GT 140083717 Upstream 49bp
chr2 183621144 183621144 1 + C T UCEC 183621143 + 183621123 183621163 41 GGATGGTTGATTTCTATTCTCCGTGGTGTCATCCTTGCCAA GGATGGTTGATTTCTATTCTCTGTGGTGTCATCCTTGCCAA < 41bp 0.505329309366972 0.737402207166636 0.12663928 0.13771394 prediction 0.464145795599328 Functional Gain - DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183621143 chr2:183621144 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_114325 0 0 1 3 1 DNAJC10 chr2:183621196 5'GT 183621196 Upstream 53bp
chr4 110901176 110901176 1 + A G ESCA 110901173 + 110901153 110901193 41 TGAGGATTATGTGTGGTTCTCAGATTGGGCTATGCCATCAG TGAGGATTATGTGTGGTTCTCAGGTTGGGCTATGCCATCAG < 41bp 0.488877837404699 0.732071781049218 0.89337474 0.8975546 prediction 0.464143562098436 Functional Gain - EGF ENSG00000138798 CDS Human protein_coding chr4:110901173 chr4:110901176 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_114326 0 0 0 0 1 EGF chr4:110901128 3'AG 110901128 Downstream 49bp
chr6 41617366 41617366 1 + A G STAD 41617363 + 41617343 41617383 41 CTTCATCTCTCCAGGCCAGCCTCAGGGGAACCCCTTGGGCT CTTCATCTCTCCAGGCCAGCCTCGGGGGAACCCCTTGGGCT < 41bp 0.538037262734964 0.770106147021828 0.153768 0.20810458 prediction 0.464137768573728 Functional Gain - MDFI ENSG00000112559 CDS Human protein_coding chr6:41617363 chr6:41617366 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_114328 0 0 0 0 1 MDFI chr6:41617357 3'AG 41617357 Downstream 10bp
chr6 44200593 44200593 1 + T A CESC 44200589 + 44200569 44200609 41 CAAGCCTGGTGCTGGCCCGGCTGGTGTTTGTGCCACTGCTG CAAGCCTGGTGCTGGCCCGGCTGGAGTTTGTGCCACTGCTG < 41bp 0.637066006114171 0.869133990859648 0.3766551 0.6087151 prediction 0.464135969490955 Functional Gain - SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44200589 chr6:44200593 nonsynonymous SNV 0.295 2 25 hm5C_associated_SNPs_114330 0 0 1 0 1 SLC29A1 chr6:44200544 3'AG 44200544 Downstream 50bp
chr16 30910772 30910772 1 + C T SKCM 30910771 + 30910751 30910791 41 ATTCCTCAGTCTCACTTCTTCCCCACTTGGAGGCCAAGATC ATTCCTCAGTCTCACTTCTTCTCCACTTGGAGGCCAAGATC < 41bp 0.597790533529289 0.829858205806428 0.011373043 0.44713667 prediction 0.464135344554278 Functional Gain - CTF1 ENSG00000150281 CDS Human protein_coding chr16:30910771 chr16:30910772 nonsynonymous SNV 0.992 2 22 hm5C_associated_SNPs_114331 0 0 0 0 3 CTF1 chr16:30910736 3'AG 30910736 Downstream 37bp
chr16 30910772 30910772 1 + C T SKCM 30910771 + 30910751 30910791 41 ATTCCTCAGTCTCACTTCTTCCCCACTTGGAGGCCAAGATC ATTCCTCAGTCTCACTTCTTCTCCACTTGGAGGCCAAGATC < 41bp 0.597790533529289 0.829858205806428 0.011373043 0.44713667 prediction 0.464135344554278 Functional Gain - CTF1 ENSG00000150281 CDS Human protein_coding chr16:30910771 chr16:30910772 nonsynonymous SNV 0.992 2 22 hm5C_associated_SNPs_114331 0 0 0 0 3 CTF1 chr16:30910739 3'AG 30910739 Downstream 34bp
chr16 30910772 30910772 1 + C T SKCM 30910771 + 30910751 30910791 41 ATTCCTCAGTCTCACTTCTTCCCCACTTGGAGGCCAAGATC ATTCCTCAGTCTCACTTCTTCTCCACTTGGAGGCCAAGATC < 41bp 0.597790533529289 0.829858205806428 0.011373043 0.44713667 prediction 0.464135344554278 Functional Gain - CTF1 ENSG00000150281 CDS Human protein_coding chr16:30910771 chr16:30910772 nonsynonymous SNV 0.992 2 22 hm5C_associated_SNPs_114331 0 0 0 0 3 CTF1 chr16:30910854 5'GT 30910854 Upstream 83bp
chr19 35657168 35657168 1 + C T COAD 35657167 + 35657147 35657187 41 TCTGCAGATGAACACACCCTCCGGAAACGGGGGCTGTTGGT TCTGCAGATGAACACACCCTCTGGAAACGGGGGCTGTTGGT < 41bp 0.559877799818245 0.79194144883799 0.26720253 0.8508709 prediction 0.464127298039489 Functional Gain - FXYD5 ENSG00000089327 CDS Human protein_coding chr19:35657167 chr19:35657168 nonsynonymous SNV 0.964 4 22 hm5C_associated_SNPs_114333 0 0 1 0 2 FXYD5 chr19:35657154 3'AG 35657154 Downstream 15bp
chr19 35657168 35657168 1 + C T COAD 35657167 + 35657147 35657187 41 TCTGCAGATGAACACACCCTCCGGAAACGGGGGCTGTTGGT TCTGCAGATGAACACACCCTCTGGAAACGGGGGCTGTTGGT < 41bp 0.559877799818245 0.79194144883799 0.26720253 0.8508709 prediction 0.464127298039489 Functional Gain - FXYD5 ENSG00000089327 CDS Human protein_coding chr19:35657167 chr19:35657168 nonsynonymous SNV 0.964 4 22 hm5C_associated_SNPs_114333 0 0 1 0 2 FXYD5 chr19:35657228 5'GT 35657228 Upstream 61bp
chr6 33374066 33374066 1 + C A PRAD 33374062 + 33374042 33374082 41 TCACGCAGCCACAGTGTATTCCAGCTACAGATTTCTGGGGA TCACGCAGCCACAGTGTATTCCAGATACAGATTTCTGGGGA < 41bp 0.31804714587277 0.732062428749542 0.48325357 0.48660573 prediction 0.464124857499083 Functional Gain - KIFC1 ENSG00000237649 CDS Human protein_coding chr6:33374062 chr6:33374066 nonsynonymous SNV 0.987 4 25 hm5C_associated_SNPs_114335 0 0 1 0 1 KIFC1 chr6:33373973 3'AG 33373973 Downstream 94bp
chr15 75562493 75562493 1 + C A BLCA 75562492 + 75562472 75562512 41 GGTTCTCCCCATGACAACCCCCCGGTACAGCAGATCGTGCA GGTTCTCCCCATGACAACCCCACGGTACAGCAGATCGTGCA < 41bp 0.553020199355162 0.785078998902335 0.061317146 0.08263233 prediction 0.464117599094346 Functional Gain - GOLGA6C ENSG00000167195 CDS Human protein_coding chr15:75562492 chr15:75562493 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_114336 0 0 0 0 1 GOLGA6C chr15:75562413 3'AG 75562413 Downstream 81bp
chr20 44433800 44433800 1 + C T UCEC 44433799 + 44433779 44433819 41 GCACAGTGGGACCCAGCTCGCCTGAATGAATCTACCACCTT GCACAGTGGGACCCAGCTCGCTTGAATGAATCTACCACCTT < 41bp 0.559485545583522 0.791543466619815 0.032458246 0.05450681 prediction 0.464115842072585 Functional Gain - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44433799 chr20:44433800 synonymous SNV . 0 22 hm5C_associated_SNPs_114337 0 0 1 0 2 DNTTIP1 chr20:44433785 3'AG 44433785 Downstream 16bp
chr20 44433800 44433800 1 + C T UCEC 44433799 + 44433779 44433819 41 GCACAGTGGGACCCAGCTCGCCTGAATGAATCTACCACCTT GCACAGTGGGACCCAGCTCGCTTGAATGAATCTACCACCTT < 41bp 0.559485545583522 0.791543466619815 0.032458246 0.05450681 prediction 0.464115842072585 Functional Gain - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44433799 chr20:44433800 synonymous SNV . 0 22 hm5C_associated_SNPs_114337 0 0 1 0 2 DNTTIP1 chr20:44433843 5'GT 44433843 Upstream 44bp
chr19 41763503 41763503 1 + C T UCEC 41763502 + 41763482 41763522 41 TATCTGCGCCAGGGAAATCGCCTGAAGCAGCCTGCGGACTG TATCTGCGCCAGGGAAATCGCTTGAAGCAGCCTGCGGACTG < 41bp 0.558961545574269 0.791015735816534 0.51556444 0.29601943 prediction 0.464108380484529 Functional Gain - AXL ENSG00000167601 CDS Human protein_coding chr19:41763502 chr19:41763503 synonymous SNV . 0 22 hm5C_associated_SNPs_114338 0 0 0 0 1 AXL chr19:41763534 5'GT 41763534 Upstream 32bp
chr7 142961653 142961653 1 + C T SKCM 142961652 + 142961632 142961672 41 TCCTGGCAGGAAACAAGCCTCCAGGTCTGCTTCCCCGCAAA TCCTGGCAGGAAACAAGCCTCTAGGTCTGCTTCCCCGCAAA < 41bp 0.495029286045673 0.732053633416275 0.77737665 0.44251472 prediction 0.464107266832551 Functional Gain - GSTK1 ENSG00000197448 CDS Human protein_coding chr7:142961652 chr7:142961653 nonsynonymous SNV 0.088 4 22 hm5C_associated_SNPs_114340 0 0 1 0 1 GSTK1 chr7:142961641 3'AG 142961641 Downstream 13bp
chr2 131890543 131890543 1 + C G BLCA 131890539 + 131890519 131890559 41 TTCCTCACCTCCACCATACACGGCCTATGCTGCACCGGCCC TTCCTCACCTCCACCATACACGGCGTATGCTGCACCGGCCC < 41bp 0.607933911695298 0.839986201562778 0.37651074 0.85700834 prediction 0.46410457973496 Functional Gain - PLEKHB2 ENSG00000115762 CDS Human protein_coding chr2:131890539 chr2:131890543 synonymous SNV . 0 25 hm5C_associated_SNPs_114342 0 0 1 0 3 PLEKHB2 chr2:131890475 3'AG 131890475 Downstream 69bp
chr2 131890543 131890543 1 + C G BLCA 131890539 + 131890519 131890559 41 TTCCTCACCTCCACCATACACGGCCTATGCTGCACCGGCCC TTCCTCACCTCCACCATACACGGCGTATGCTGCACCGGCCC < 41bp 0.607933911695298 0.839986201562778 0.37651074 0.85700834 prediction 0.46410457973496 Functional Gain - PLEKHB2 ENSG00000115762 CDS Human protein_coding chr2:131890539 chr2:131890543 synonymous SNV . 0 25 hm5C_associated_SNPs_114342 0 0 1 0 3 PLEKHB2 chr2:131890564 5'GT 131890564 Upstream 22bp
chr2 131890543 131890543 1 + C G BLCA 131890539 + 131890519 131890559 41 TTCCTCACCTCCACCATACACGGCCTATGCTGCACCGGCCC TTCCTCACCTCCACCATACACGGCGTATGCTGCACCGGCCC < 41bp 0.607933911695298 0.839986201562778 0.37651074 0.85700834 prediction 0.46410457973496 Functional Gain - PLEKHB2 ENSG00000115762 CDS Human protein_coding chr2:131890539 chr2:131890543 synonymous SNV . 0 25 hm5C_associated_SNPs_114342 0 0 1 0 3 PLEKHB2 chr2:131890588 5'GT 131890588 Upstream 46bp
chr3 52513791 52513791 1 + A G LIHC 52513788 + 52513768 52513808 41 TGTCTGGATGACACAGTGACCACAGAGAAGGAGCTGGACAC TGTCTGGATGACACAGTGACCACGGAGAAGGAGCTGGACAC < 41bp 0.498162780614613 0.732050048028397 0.2993572 0.600425 prediction 0.464100096056793 Functional Gain - NISCH ENSG00000010322 CDS Human protein_coding chr3:52513788 chr3:52513791 synonymous SNV . 0 24 hm5C_associated_SNPs_114344 0 0 1 0 2 NISCH chr3:52513765 3'AG 52513765 Downstream 27bp
chr3 52513791 52513791 1 + A G LIHC 52513788 + 52513768 52513808 41 TGTCTGGATGACACAGTGACCACAGAGAAGGAGCTGGACAC TGTCTGGATGACACAGTGACCACGGAGAAGGAGCTGGACAC < 41bp 0.498162780614613 0.732050048028397 0.2993572 0.600425 prediction 0.464100096056793 Functional Gain - NISCH ENSG00000010322 CDS Human protein_coding chr3:52513788 chr3:52513791 synonymous SNV . 0 24 hm5C_associated_SNPs_114344 0 0 1 0 2 NISCH chr3:52513878 5'GT 52513878 Upstream 88bp
chrX 69720387 69720387 1 + C T rs553913083 69720386 + 69720366 69720406 41 CTGCAGCAAGCACAACTTTACCCCATTGCCATTTTCATCAA CTGCAGCAAGCACAACTTTACTCCATTGCCATTTTCATCAA < 41bp 0.446393084903998 0.732049347810084 0.018788815 0.9472972 prediction 0.464098695620167 Functional Gain - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69720386 chrX:69720387 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_114345 0 0 0 0 2 DLG3 chrX:69720321 3'AG 69720321 Downstream 67bp
chrX 69720387 69720387 1 + C T rs553913083 69720386 + 69720366 69720406 41 CTGCAGCAAGCACAACTTTACCCCATTGCCATTTTCATCAA CTGCAGCAAGCACAACTTTACTCCATTGCCATTTTCATCAA < 41bp 0.446393084903998 0.732049347810084 0.018788815 0.9472972 prediction 0.464098695620167 Functional Gain - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69720386 chrX:69720387 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_114345 0 0 0 0 2 DLG3 chrX:69720430 5'GT 69720430 Upstream 44bp
chr22 32480551 32480551 1 + C T SKCM 32480550 + 32480530 32480570 41 ACTCCAAGGGCCGACTCCTTCCACATCTTCCGAGATCCCCT ACTCCAAGGGCCGACTCCTTCTACATCTTCCGAGATCCCCT < 41bp 0.587576349981977 0.819622403286018 0.17644173 0.42434093 prediction 0.464092106608082 Functional Gain - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32480550 chr22:32480551 nonsynonymous SNV 0.867 5 22 hm5C_associated_SNPs_114346 0 0 0 0 1 SLC5A1 chr22:32480646 5'GT 32480646 Upstream 96bp
chr16 23677033 23677033 1 + C A SKCM 23677029 + 23677009 23677049 41 AACTGTGGTTCCACCATTCACTGTCTTCTCAGGCTGCCCAG AACTGTGGTTCCACCATTCACTGTATTCTCAGGCTGCCCAG < 41bp 0.310937238734376 0.732043431330237 0.09841734 0.18447581 prediction 0.464086862660475 Functional Gain - DCTN5 ENSG00000166847 CDS Human protein_coding chr16:23677029 chr16:23677033 synonymous SNV . 0 25 hm5C_associated_SNPs_114348 0 0 1 0 2 DCTN5 chr16:23676947 3'AG 23676947 Downstream 87bp
chr16 23677033 23677033 1 + C A SKCM 23677029 + 23677009 23677049 41 AACTGTGGTTCCACCATTCACTGTCTTCTCAGGCTGCCCAG AACTGTGGTTCCACCATTCACTGTATTCTCAGGCTGCCCAG < 41bp 0.310937238734376 0.732043431330237 0.09841734 0.18447581 prediction 0.464086862660475 Functional Gain - DCTN5 ENSG00000166847 CDS Human protein_coding chr16:23677029 chr16:23677033 synonymous SNV . 0 25 hm5C_associated_SNPs_114348 0 0 1 0 2 DCTN5 chr16:23677049 5'GT 23677049 Upstream 17bp
chr19 16146783 16146783 1 + C G rs115283491 16146782 + 16146762 16146802 41 GAGGTTGCGGCTCACAGTGACCGAGCTCCTGCCCACGTGGG GAGGTTGCGGCTCACAGTGACGGAGCTCCTGCCCACGTGGG < 41bp 0.426400563118494 0.732041997466089 0.18160307 0.87728494 prediction 0.464083994932178 Functional Gain - LINC00905 ENSG00000167459;ENSG00000267609 ncRNA_exonic Human other chr19:16146782 chr19:16146783 . . 0 22 hm5C_associated_SNPs_114349 0 0 0 0 2 LINC00905 chr19:16146698 3'AG 16146698 Downstream 86bp
chr19 16146783 16146783 1 + C G rs115283491 16146782 + 16146762 16146802 41 GAGGTTGCGGCTCACAGTGACCGAGCTCCTGCCCACGTGGG GAGGTTGCGGCTCACAGTGACGGAGCTCCTGCCCACGTGGG < 41bp 0.426400563118494 0.732041997466089 0.18160307 0.87728494 prediction 0.464083994932178 Functional Gain - LINC00905 ENSG00000167459;ENSG00000267609 ncRNA_exonic Human other chr19:16146782 chr19:16146783 . . 0 22 hm5C_associated_SNPs_114349 0 0 0 0 2 LINC00905 chr19:16146827 5'GT 16146827 Upstream 45bp
chr1 152636634 152636634 1 + C T LUSC 152636633 + 152636613 152636653 41 AGCCCCCTCCCAAATGTCCTCCCAAGTGTACCCCAAAATGT AGCCCCCTCCCAAATGTCCTCTCAAGTGTACCCCAAAATGT < 41bp 0.538709338466836 0.770735749040372 0.16344416 0.17970893 prediction 0.464052821147072 Functional Gain - LCE2D ENSG00000187223 CDS Human protein_coding chr1:152636633 chr1:152636634 nonsynonymous SNV 0.012 1 22 hm5C_associated_SNPs_114352 0 0 0 0 1 LCE2D chr1:152636561 3'AG 152636561 Downstream 74bp
chr1 11732055 11732055 1 + C T ESCA 11732054 + 11732034 11732074 41 GAGGAGCTACTAGACACATTCCGGCCGGACATCGTGGTTAA GAGGAGCTACTAGACACATTCTGGCCGGACATCGTGGTTAA < 41bp 0.5111693007016 0.743194560955224 0.3843369 0.80559206 prediction 0.464050520507246 Functional Gain - FBXO6 ENSG00000116663 CDS Human protein_coding chr1:11732054 chr1:11732055 nonsynonymous SNV 0.064 4 22 hm5C_associated_SNPs_114353 0 0 0 0 2 FBXO6 chr1:11731985 3'AG 11731985 Downstream 71bp
chr1 11732055 11732055 1 + C T ESCA 11732054 + 11732034 11732074 41 GAGGAGCTACTAGACACATTCCGGCCGGACATCGTGGTTAA GAGGAGCTACTAGACACATTCTGGCCGGACATCGTGGTTAA < 41bp 0.5111693007016 0.743194560955224 0.3843369 0.80559206 prediction 0.464050520507246 Functional Gain - FBXO6 ENSG00000116663 CDS Human protein_coding chr1:11732054 chr1:11732055 nonsynonymous SNV 0.064 4 22 hm5C_associated_SNPs_114353 0 0 0 0 2 FBXO6 chr1:11732080 5'GT 11732080 Upstream 26bp
chrX 153061146 153061146 1 + A G rs190881075 153061143 + 153061123 153061163 41 TGCCTCCTGTGGTCCAGACCCAGAGCCTTCTCTGACGTCCT TGCCTCCTGTGGTCCAGACCCAGGGCCTTCTCTGACGTCCT < 41bp 0.48702239233474 0.732023225225053 0.68279636 0.9110514 prediction 0.464046450450107 Functional Gain - SSR4 ENSG00000180879 intronic Human protein_coding chrX:153061143 chrX:153061146 . . 0 24 hm5C_associated_SNPs_114354 0 0 0 0 1 SSR4 chrX:153061118 3'AG 153061118 Downstream 29bp
chr18 61569049 61569049 1 + T G STAD 61569047 + 61569027 61569067 41 GTCCTGGTGAATGCTGTCTACTTCAAAGGAAAGTGGAAAAC GTCCTGGTGAATGCTGTCTACTGCAAAGGAAAGTGGAAAAC < 41bp 0.64220748789203 0.874225391622042 0.439084 0.7760643 prediction 0.464035807460023 Functional Gain - SERPINB2 ENSG00000197632;ENSG00000242550 CDS Human other chr18:61569047 chr18:61569049 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_114356 0 0 0 0 2 SERPINB2 chr18:61568974 3'AG 61568974 Downstream 76bp
chr18 61569049 61569049 1 + T G STAD 61569047 + 61569027 61569067 41 GTCCTGGTGAATGCTGTCTACTTCAAAGGAAAGTGGAAAAC GTCCTGGTGAATGCTGTCTACTGCAAAGGAAAGTGGAAAAC < 41bp 0.64220748789203 0.874225391622042 0.439084 0.7760643 prediction 0.464035807460023 Functional Gain - SERPINB2 ENSG00000197632;ENSG00000242550 CDS Human other chr18:61569047 chr18:61569049 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_114356 0 0 0 0 2 SERPINB2 chr18:61569116 5'GT 61569116 Upstream 68bp
chr18 28906885 28906885 1 + C A THCA 28906884 + 28906864 28906904 41 ACCATCAAATGGCATTCAATCCGAAGGCAGAAACGTGAATG ACCATCAAATGGCATTCAATCAGAAGGCAGAAACGTGAATG < 41bp 0.581456568485592 0.813473227390913 0.19635195 0.7581143 prediction 0.464033317810642 Functional Gain - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28906884 chr18:28906885 synonymous SNV . 0 22 hm5C_associated_SNPs_114358 0 0 0 0 2 DSG1 chr18:28906837 3'AG 28906837 Downstream 49bp
chr18 28906885 28906885 1 + C A THCA 28906884 + 28906864 28906904 41 ACCATCAAATGGCATTCAATCCGAAGGCAGAAACGTGAATG ACCATCAAATGGCATTCAATCAGAAGGCAGAAACGTGAATG < 41bp 0.581456568485592 0.813473227390913 0.19635195 0.7581143 prediction 0.464033317810642 Functional Gain - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28906884 chr18:28906885 synonymous SNV . 0 22 hm5C_associated_SNPs_114358 0 0 0 0 2 DSG1 chr18:28906968 5'GT 28906968 Upstream 84bp
chr13 114286001 114286001 1 + C A GBM 114286000 + 114285980 114286020 41 GTGGTAGGAAGCCCACACACCCCCAGCACTCACTTTGCCTC GTGGTAGGAAGCCCACACACCACCAGCACTCACTTTGCCTC < 41bp 0.527962288260881 0.759972949790413 0.060059637 0.108685315 prediction 0.464021323059064 Functional Gain - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114286000 chr13:114286001 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_114361 0 0 1 0 2 TFDP1 chr13:114285938 3'AG 114285938 Downstream 64bp
chr13 114286001 114286001 1 + C A GBM 114286000 + 114285980 114286020 41 GTGGTAGGAAGCCCACACACCCCCAGCACTCACTTTGCCTC GTGGTAGGAAGCCCACACACCACCAGCACTCACTTTGCCTC < 41bp 0.527962288260881 0.759972949790413 0.060059637 0.108685315 prediction 0.464021323059064 Functional Gain - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114286000 chr13:114286001 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_114361 0 0 1 0 2 TFDP1 chr13:114286059 5'GT 114286059 Upstream 59bp
chr12 50498517 50498517 1 + A G STAD 50498514 + 50498494 50498534 41 ATGTCAAATACCTGCCAGGGCACAAGTTGCCCCCAAATGTG ATGTCAAATACCTGCCAGGGCACGAGTTGCCCCCAAATGTG < 41bp 0.534870597008359 0.766880499482074 0.029560536 0.06249255 prediction 0.464019804947431 Functional Gain - GPD1 ENSG00000167588 CDS Human protein_coding chr12:50498514 chr12:50498517 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_114362 0 0 0 0 1 GPD1 chr12:50498534 5'GT 50498534 Upstream 18bp
chr2 88828634 88828634 1 + C A LUAD 88828633 + 88828613 88828653 41 GGCCCATCCCTAACCCCAACCCCAAGCTAACAGATGGGTAC GGCCCATCCCTAACCCCAACCACAAGCTAACAGATGGGTAC < 41bp 0.467961598437333 0.732009172036672 0.08299494 0.14159063 prediction 0.464018344073343 Functional Gain - TEX37 ENSG00000172073 CDS Human protein_coding chr2:88828633 chr2:88828634 nonsynonymous SNV 0.784 4 22 hm5C_associated_SNPs_114363 0 0 0 0 1 TEX37 chr2:88828570 3'AG 88828570 Downstream 65bp
chr5 176304608 176304608 1 + C T HNSC 176304607 + 176304587 176304627 41 ACCCCCTGGCGTCCTGCTCACCCGGCCAGTCATCCTGGCTA ACCCCCTGGCGTCCTGCTCACTCGGCCAGTCATCCTGGCTA < 41bp 0.572647105680752 0.804651946297866 0.28692192 0.40448743 prediction 0.464009681234227 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176304607 chr5:176304608 synonymous SNV . 0 22 hm5C_associated_SNPs_114367 0 0 0 0 2 UNC5A chr5:176304536 3'AG 176304536 Downstream 73bp
chr5 176304608 176304608 1 + C T HNSC 176304607 + 176304587 176304627 41 ACCCCCTGGCGTCCTGCTCACCCGGCCAGTCATCCTGGCTA ACCCCCTGGCGTCCTGCTCACTCGGCCAGTCATCCTGGCTA < 41bp 0.572647105680752 0.804651946297866 0.28692192 0.40448743 prediction 0.464009681234227 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176304607 chr5:176304608 synonymous SNV . 0 22 hm5C_associated_SNPs_114367 0 0 0 0 2 UNC5A chr5:176304704 5'GT 176304704 Upstream 97bp
chr2 98340559 98340559 1 + C A UCEC 98340558 + 98340538 98340578 41 CAGCATCTCGCGTGCCGAGGCCGAGGAGCACCTGAAGCTGG CAGCATCTCGCGTGCCGAGGCAGAGGAGCACCTGAAGCTGG < 41bp 0.565225002486982 0.797221049942938 0.42324638 0.8148123 prediction 0.463992094911912 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98340558 chr2:98340559 synonymous SNV . 0 22 hm5C_associated_SNPs_114368 0 0 0 0 1 ZAP70 chr2:98340479 3'AG 98340479 Downstream 81bp
chr11 57456012 57456012 1 + C T COAD 57456011 + 57455991 57456031 41 GAGGACAAGGAAGATGATTTCCGAGCTCCCCTTTACAAAAC GAGGACAAGGAAGATGATTTCTGAGCTCCCCTTTACAAAAC < 41bp 0.545341775587826 0.777334433350341 0.5371565 0.20243236 prediction 0.46398531552503 Functional Gain - ZDHHC5 ENSG00000156599 CDS Human protein_coding chr11:57456011 chr11:57456012 stopgain 1.000 1 22 hm5C_associated_SNPs_114372 0 0 1 0 1 ZDHHC5 chr11:57455980 3'AG 57455980 Downstream 33bp
chr12 119916944 119916944 1 + A G LUSC 119916941 + 119916921 119916961 41 AAGACACTGGGAGCTAGAGTCACACGTCGCCCATTCACTCC AAGACACTGGGAGCTAGAGTCACGCGTCGCCCATTCACTCC < 41bp 0.548190156708773 0.780163285591778 0.097735554 0.21147832 prediction 0.463946257766011 Functional Gain - CCDC60 ENSG00000183273 CDS Human protein_coding chr12:119916941 chr12:119916944 synonymous SNV . 0 24 hm5C_associated_SNPs_114377 0 0 0 0 2 CCDC60 chr12:119916899 3'AG 119916899 Downstream 46bp
chr12 119916944 119916944 1 + A G LUSC 119916941 + 119916921 119916961 41 AAGACACTGGGAGCTAGAGTCACACGTCGCCCATTCACTCC AAGACACTGGGAGCTAGAGTCACGCGTCGCCCATTCACTCC < 41bp 0.548190156708773 0.780163285591778 0.097735554 0.21147832 prediction 0.463946257766011 Functional Gain - CCDC60 ENSG00000183273 CDS Human protein_coding chr12:119916941 chr12:119916944 synonymous SNV . 0 24 hm5C_associated_SNPs_114377 0 0 0 0 2 CCDC60 chr12:119917006 5'GT 119917006 Upstream 63bp
chr20 2843995 2843995 1 + C A LIHC 2843994 + 2843974 2844014 41 TATGCGAGTACTTGCGCCTTCCTGAAGTACAGGGCGTCAGC TATGCGAGTACTTGCGCCTTCATGAAGTACAGGGCGTCAGC < 41bp 0.474205897695676 0.731964578068806 0.6189493 0.58913213 prediction 0.463929156137611 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2843994 chr20:2843995 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_114379 0 0 1 1 1 VPS16 chr20:2843936 3'AG 2843936 Downstream 60bp
chr11 47176775 47176775 1 + T A SKCM 47176771 + 47176751 47176791 41 GGACTGCTTGATGTCTTTTTCAGATTTCCTCTTTGCCTTCC GGACTGCTTGATGTCTTTTTCAGAATTCCTCTTTGCCTTCC < 41bp 0.433368183469046 0.731962911168565 0.90873843 0.9282305 prediction 0.463925822337129 Functional Gain - C11orf49 ENSG00000149179 CDS Human protein_coding chr11:47176771 chr11:47176775 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_114381 0 0 1 0 2 C11orf49 chr11:47176727 3'AG 47176727 Downstream 49bp
chr11 47176775 47176775 1 + T A SKCM 47176771 + 47176751 47176791 41 GGACTGCTTGATGTCTTTTTCAGATTTCCTCTTTGCCTTCC GGACTGCTTGATGTCTTTTTCAGAATTCCTCTTTGCCTTCC < 41bp 0.433368183469046 0.731962911168565 0.90873843 0.9282305 prediction 0.463925822337129 Functional Gain - C11orf49 ENSG00000149179 CDS Human protein_coding chr11:47176771 chr11:47176775 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_114381 0 0 1 0 2 C11orf49 chr11:47176812 5'GT 47176812 Upstream 38bp
chr8 32621319 32621319 1 + C A LUAD 32621315 + 32621295 32621335 41 GTATGTCACCTGTAGATTTCCACACGCCAAGCTCCCCCAAA GTATGTCACCTGTAGATTTCCACAAGCCAAGCTCCCCCAAA < 41bp 0.44194125263736 0.731958112382553 0.31385618 0.17497456 prediction 0.463916224765106 Functional Gain - NRG1 ENSG00000157168 CDS Human protein_coding chr8:32621315 chr8:32621319 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_114382 0 0 0 0 1 NRG1 chr8:32621266 3'AG 32621266 Downstream 54bp
chr19 56693556 56693556 1 + A G UCEC 56693553 + 56693533 56693573 41 CTACCCAGTCCTCCACCTTCCCCAAATGGGTGACCAAGACG CTACCCAGTCCTCCACCTTCCCCGAATGGGTGACCAAGACG < 41bp 0.48675598621931 0.7319558945209 0.1694017 0.06385717 prediction 0.4639117890418 Functional Gain - GALP ENSG00000197487 CDS Human protein_coding chr19:56693553 chr19:56693556 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_114383 0 0 0 0 2 GALP chr19:56693541 3'AG 56693541 Downstream 16bp
chr19 56693556 56693556 1 + A G UCEC 56693553 + 56693533 56693573 41 CTACCCAGTCCTCCACCTTCCCCAAATGGGTGACCAAGACG CTACCCAGTCCTCCACCTTCCCCGAATGGGTGACCAAGACG < 41bp 0.48675598621931 0.7319558945209 0.1694017 0.06385717 prediction 0.4639117890418 Functional Gain - GALP ENSG00000197487 CDS Human protein_coding chr19:56693553 chr19:56693556 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_114383 0 0 0 0 2 GALP chr19:56693621 5'GT 56693621 Upstream 66bp
chr3 114012912 114012912 1 + C A READ 114012908 + 114012888 114012928 41 GTAGGCCCTCTGGGCAGAAGCATGCGCTGGTGTCTCCTCCT GTAGGCCCTCTGGGCAGAAGCATGAGCTGGTGTCTCCTCCT < 41bp 0.572846393060987 0.804791194738335 0.3260855 0.57216394 prediction 0.463889603354696 Functional Gain - TIGIT ENSG00000181847 CDS Human protein_coding chr3:114012908 chr3:114012912 nonsynonymous SNV 0.904 0 25 hm5C_associated_SNPs_114386 0 0 0 0 1 TIGIT chr3:114012969 5'GT 114012969 Upstream 58bp
chr16 68943298 68943298 1 + T C UCEC 68943296 + 68943276 68943316 41 TCTGAGCAGATATTCACAAACGTCACTCAGGTCAGTAGTTG TCTGAGCAGATATTCACAAACGCCACTCAGGTCAGTAGTTG < 41bp 0.447626819939511 0.731942505142637 0.19959167 0.07746294 prediction 0.463885010285274 Functional Gain - TANGO6 ENSG00000103047 CDS Human protein_coding chr16:68943296 chr16:68943298 nonsynonymous SNV 0.982 0 23 hm5C_associated_SNPs_114387 0 0 1 0 1 TANGO6 chr16:68943305 5'GT 68943305 Upstream 8bp
chr16 29690494 29690494 1 + C A LUAD 29690490 + 29690470 29690510 41 CCTTGGTCCTGAGCAGCCAACACACCAGCCCAGACAGCTGC CCTTGGTCCTGAGCAGCCAACACAACAGCCCAGACAGCTGC < 41bp 0.397154257255016 0.731940673725844 0.12409592 0.15530363 prediction 0.463881347451689 Functional Gain - QPRT ENSG00000103485 UTR5 Human protein_coding chr16:29690490 chr16:29690494 . . 0 25 hm5C_associated_SNPs_114389 0 0 1 1 1 QPRT chr16:29690531 5'GT 29690531 Upstream 38bp
chr14 72196961 72196961 1 + C T SKCM 72196960 + 72196940 72196980 41 AGTAGCACGTACCCTTCTCTCCCCAAGTCGCTCCCGTTGAG AGTAGCACGTACCCTTCTCTCTCCAAGTCGCTCCCGTTGAG < 41bp 0.5963459061707 0.828285071506895 0.26950365 0.95307505 prediction 0.463878330672391 Functional Gain - SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72196960 chr14:72196961 nonsynonymous SNV 0.987 2 22 hm5C_associated_SNPs_114390 0 0 0 0 1 SIPA1L1 chr14:72197018 5'GT 72197018 Upstream 58bp
chr2 113676219 113676219 1 + T C rs2708947 113676217 + 113676197 113676237 41 TTATAGGGCTCAGGTGGGCTCCTGGAACATGCTGGAGTCGG TTATAGGGCTCAGGTGGGCTCCCGGAACATGCTGGAGTCGG < 41bp 0.547093887440738 0.779030979268877 0.29282653 0.30377525 prediction 0.463874183656277 Functional Gain - IL37 ENSG00000125571 CDS Human protein_coding chr2:113676217 chr2:113676219 nonsynonymous SNV 0.009 0 23 hm5C_associated_SNPs_114391 0 0 0 0 1 IL37 chr2:113676138 3'AG 113676138 Downstream 82bp
chr3 38357961 38357961 1 + C A rs240033 38357960 + 38357940 38357980 41 TTTCCCTCTCCTCCCTGCTGCCGGAAACGCGAGATCAGCCC TTTCCCTCTCCTCCCTGCTGCAGGAAACGCGAGATCAGCCC < 41bp 0.573461056565806 0.805396347077875 0.9032116 0.9077686 prediction 0.463870581024139 Functional Gain - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38357960 chr3:38357961 nonsynonymous SNV 0.001 4 22 hm5C_associated_SNPs_114392 0 0 0 0 1 SLC22A14 chr3:38358015 5'GT 38358015 Upstream 55bp
chr5 148679089 148679089 1 + C T SKCM 148679088 + 148679068 148679108 41 GCAGTGCTGGAGCAGCTGCTCCCAGAGCTCACCGGGCTGCT GCAGTGCTGGAGCAGCTGCTCTCAGAGCTCACCGGGCTGCT < 41bp 0.481281102863297 0.731934830486248 0.4423957 0.05806893 prediction 0.463869660972497 Functional Gain - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148679088 chr5:148679089 nonsynonymous SNV 0.989 1 22 hm5C_associated_SNPs_114393 0 0 0 0 1 AFAP1L1 chr5:148679072 3'AG 148679072 Downstream 18bp
chr9 131117771 131117771 1 + C T STAD 131117770 + 131117750 131117790 41 AGGTGAGAACGTGTCCACCACCGAGGTGGAAGGCACACTCA AGGTGAGAACGTGTCCACCACTGAGGTGGAAGGCACACTCA < 41bp 0.482166976231263 0.731931422801538 0.45003533 0.23457861 prediction 0.463862845603075 Functional Gain - SLC27A4 ENSG00000167114 CDS Human protein_coding chr9:131117770 chr9:131117771 synonymous SNV . 0 22 hm5C_associated_SNPs_114395 0 0 0 0 2 SLC27A4 chr9:131117677 3'AG 131117677 Downstream 95bp
chr9 131117771 131117771 1 + C T STAD 131117770 + 131117750 131117790 41 AGGTGAGAACGTGTCCACCACCGAGGTGGAAGGCACACTCA AGGTGAGAACGTGTCCACCACTGAGGTGGAAGGCACACTCA < 41bp 0.482166976231263 0.731931422801538 0.45003533 0.23457861 prediction 0.463862845603075 Functional Gain - SLC27A4 ENSG00000167114 CDS Human protein_coding chr9:131117770 chr9:131117771 synonymous SNV . 0 22 hm5C_associated_SNPs_114395 0 0 0 0 2 SLC27A4 chr9:131117841 5'GT 131117841 Upstream 71bp
chr1 156351931 156351931 1 + C T SKCM 156351930 + 156351910 156351950 41 CTCCATGGGATGCCGGGGGTCCTGGGGGCCCTCCTGGGGGT CTCCATGGGATGCCGGGGGTCTTGGGGGCCCTCCTGGGGGT < 41bp 0.548328993627168 0.780259225663679 0.9377376 0.94554543 prediction 0.463860464073023 Functional Gain - RHBG ENSG00000132677 CDS Human protein_coding chr1:156351930 chr1:156351931 synonymous SNV . 0 22 hm5C_associated_SNPs_114396 0 0 0 0 2 RHBG chr1:156351859 3'AG 156351859 Downstream 73bp
chr1 156351931 156351931 1 + C T SKCM 156351930 + 156351910 156351950 41 CTCCATGGGATGCCGGGGGTCCTGGGGGCCCTCCTGGGGGT CTCCATGGGATGCCGGGGGTCTTGGGGGCCCTCCTGGGGGT < 41bp 0.548328993627168 0.780259225663679 0.9377376 0.94554543 prediction 0.463860464073023 Functional Gain - RHBG ENSG00000132677 CDS Human protein_coding chr1:156351930 chr1:156351931 synonymous SNV . 0 22 hm5C_associated_SNPs_114396 0 0 0 0 2 RHBG chr1:156351992 5'GT 156351992 Upstream 62bp
chrX 54838071 54838071 1 + C G OV 54838067 + 54838047 54838087 41 CCCCGAAATCATTGAACGAGCAGGCTATTCCTTGGAGAAGG CCCCGAAATCATTGAACGAGCAGGGTATTCCTTGGAGAAGG < 41bp 0.620844003019228 0.852766065507506 0.44332415 0.8577146 prediction 0.463844124976556 Functional Gain - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54838067 chrX:54838071 synonymous SNV . 0 25 hm5C_associated_SNPs_114399 0 0 1 0 2 MAGED2 chrX:54838007 3'AG 54838007 Downstream 65bp
chrX 54838071 54838071 1 + C G OV 54838067 + 54838047 54838087 41 CCCCGAAATCATTGAACGAGCAGGCTATTCCTTGGAGAAGG CCCCGAAATCATTGAACGAGCAGGGTATTCCTTGGAGAAGG < 41bp 0.620844003019228 0.852766065507506 0.44332415 0.8577146 prediction 0.463844124976556 Functional Gain - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54838067 chrX:54838071 synonymous SNV . 0 25 hm5C_associated_SNPs_114399 0 0 1 0 2 MAGED2 chrX:54838086 5'GT 54838086 Upstream 16bp
chr19 3209483 3209483 1 + T G rs4594 3209481 + 3209461 3209501 41 TTCCTTCCTGGACAGGTCGTCATGATGGATGCACTGACTGA TTCCTTCCTGGACAGGTCGTCAGGATGGATGCACTGACTGA < 41bp 0.469130046625925 0.731919701847092 0.40069497 0.86310387 prediction 0.463839403694184 Functional Gain - NCLN ENSG00000125912 UTR3 Human protein_coding chr19:3209481 chr19:3209483 . . 0 23 hm5C_associated_SNPs_114402 0 0 1 5 1 NCLN chr19:3209476 3'AG 3209476 Downstream 8bp
chr15 39874092 39874092 1 + C T rs35248254 39874091 + 39874071 39874111 41 TGGGGACTAGGCGTCCTGTTCCTGATGCATGTGTGTGGCAC TGGGGACTAGGCGTCCTGTTCTTGATGCATGTGTGTGGCAC < 41bp 0.576918565241003 0.808836113850486 0.20677003 0.1892496 prediction 0.463835097218967 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39874091 chr15:39874092 synonymous SNV . 0 22 hm5C_associated_SNPs_114404 0 0 0 0 2 THBS1 chr15:39874030 3'AG 39874030 Downstream 63bp
chr15 39874092 39874092 1 + C T rs35248254 39874091 + 39874071 39874111 41 TGGGGACTAGGCGTCCTGTTCCTGATGCATGTGTGTGGCAC TGGGGACTAGGCGTCCTGTTCTTGATGCATGTGTGTGGCAC < 41bp 0.576918565241003 0.808836113850486 0.20677003 0.1892496 prediction 0.463835097218967 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39874091 chr15:39874092 synonymous SNV . 0 22 hm5C_associated_SNPs_114404 0 0 0 0 2 THBS1 chr15:39874125 5'GT 39874125 Upstream 34bp
chr1 153941105 153941105 1 + C T rs148526275 153941104 + 153941084 153941124 41 TGGGACTCCACTGCCCCCCTCCAGAGGTTCCGGTAACTAGG TGGGACTCCACTGCCCCCCTCTAGAGGTTCCGGTAACTAGG < 41bp 0.558823821583168 0.790736413638935 0.8815209 0.36919188 prediction 0.463825184111534 Functional Gain - CREB3L4 ENSG00000143578 CDS Human protein_coding chr1:153941104 chr1:153941105 nonsynonymous SNV 0.006 0 22 hm5C_associated_SNPs_114405 0 0 0 0 2 CREB3L4 chr1:153941115 5'GT 153941115 Upstream 11bp
chr1 153941105 153941105 1 + C T rs148526275 153941104 + 153941084 153941124 41 TGGGACTCCACTGCCCCCCTCCAGAGGTTCCGGTAACTAGG TGGGACTCCACTGCCCCCCTCTAGAGGTTCCGGTAACTAGG < 41bp 0.558823821583168 0.790736413638935 0.8815209 0.36919188 prediction 0.463825184111534 Functional Gain - CREB3L4 ENSG00000143578 CDS Human protein_coding chr1:153941104 chr1:153941105 nonsynonymous SNV 0.006 0 22 hm5C_associated_SNPs_114405 0 0 0 0 2 CREB3L4 chr1:153941175 5'GT 153941175 Upstream 71bp
chr7 150739135 150739135 1 + C T STAD 150739134 + 150739114 150739154 41 GAAGAGGTGTACACAGCCGCCCGGGAAGCGAATGCTCACGA GAAGAGGTGTACACAGCCGCCTGGGAAGCGAATGCTCACGA < 41bp 0.545330205882859 0.777240430118482 0.39572653 0.29047206 prediction 0.463820448471248 Functional Gain - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150739134 chr7:150739135 nonsynonymous SNV 0.306 4 22 hm5C_associated_SNPs_114406 0 0 0 0 1 ABCB8 chr7:150739048 3'AG 150739048 Downstream 88bp
chr6 160234645 160234645 1 + C T SKCM 160234644 + 160234624 160234664 41 TGATTGTAGGAGATGAATTTCCCGAGGGTGTCGAATCTTTC TGATTGTAGGAGATGAATTTCTCGAGGGTGTCGAATCTTTC < 41bp 0.56522435655466 0.797130872852049 0.42003584 0.28260884 prediction 0.463813032594776 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160234644 chr6:160234645 nonsynonymous SNV 0.632 0 22 hm5C_associated_SNPs_114407 0 0 1 0 2 PNLDC1 chr6:160234633 3'AG 160234633 Downstream 13bp
chr6 160234645 160234645 1 + C T SKCM 160234644 + 160234624 160234664 41 TGATTGTAGGAGATGAATTTCCCGAGGGTGTCGAATCTTTC TGATTGTAGGAGATGAATTTCTCGAGGGTGTCGAATCTTTC < 41bp 0.56522435655466 0.797130872852049 0.42003584 0.28260884 prediction 0.463813032594776 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160234644 chr6:160234645 nonsynonymous SNV 0.632 0 22 hm5C_associated_SNPs_114407 0 0 1 0 2 PNLDC1 chr6:160234688 5'GT 160234688 Upstream 44bp
chr6 10959066 10959066 1 + C A LUAD 10959065 + 10959045 10959085 41 CAGAAAATGCAAAGAAAGCACCGGATTGCCTAATAAAACTT CAGAAAATGCAAAGAAAGCACAGGATTGCCTAATAAAACTT < 41bp 0.474558323318589 0.731905311056083 0.062331587 0.19758579 prediction 0.463810622112166 Functional Gain - SYCP2L ENSG00000153157 CDS Human protein_coding chr6:10959065 chr6:10959066 nonsynonymous SNV 0.370 1 22 hm5C_associated_SNPs_114408 0 0 1 0 2 SYCP2L chr6:10959017 3'AG 10959017 Downstream 50bp
chr6 10959066 10959066 1 + C A LUAD 10959065 + 10959045 10959085 41 CAGAAAATGCAAAGAAAGCACCGGATTGCCTAATAAAACTT CAGAAAATGCAAAGAAAGCACAGGATTGCCTAATAAAACTT < 41bp 0.474558323318589 0.731905311056083 0.062331587 0.19758579 prediction 0.463810622112166 Functional Gain - SYCP2L ENSG00000153157 CDS Human protein_coding chr6:10959065 chr6:10959066 nonsynonymous SNV 0.370 1 22 hm5C_associated_SNPs_114408 0 0 1 0 2 SYCP2L chr6:10959108 5'GT 10959108 Upstream 43bp
chr6 36983627 36983627 1 + C T COAD 36983626 + 36983606 36983646 41 GAGGACCCGCATCGATGTGGCCGGGATGAAGGTAAGAGGCC GAGGACCCGCATCGATGTGGCTGGGATGAAGGTAAGAGGCC < 41bp 0.499907028413231 0.7318992566948 0.34315622 0.29484588 prediction 0.4637985133896 Functional Gain - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36983626 chr6:36983627 synonymous SNV . 0 22 hm5C_associated_SNPs_114412 0 0 0 0 3 FGD2 chr6:36983544 3'AG 36983544 Downstream 84bp
chr6 36983627 36983627 1 + C T COAD 36983626 + 36983606 36983646 41 GAGGACCCGCATCGATGTGGCCGGGATGAAGGTAAGAGGCC GAGGACCCGCATCGATGTGGCTGGGATGAAGGTAAGAGGCC < 41bp 0.499907028413231 0.7318992566948 0.34315622 0.29484588 prediction 0.4637985133896 Functional Gain - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36983626 chr6:36983627 synonymous SNV . 0 22 hm5C_associated_SNPs_114412 0 0 0 0 3 FGD2 chr6:36983576 3'AG 36983576 Downstream 52bp
chr6 36983627 36983627 1 + C T COAD 36983626 + 36983606 36983646 41 GAGGACCCGCATCGATGTGGCCGGGATGAAGGTAAGAGGCC GAGGACCCGCATCGATGTGGCTGGGATGAAGGTAAGAGGCC < 41bp 0.499907028413231 0.7318992566948 0.34315622 0.29484588 prediction 0.4637985133896 Functional Gain - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36983626 chr6:36983627 synonymous SNV . 0 22 hm5C_associated_SNPs_114412 0 0 0 0 3 FGD2 chr6:36983636 5'GT 36983636 Upstream 10bp
chr6 153078257 153078257 1 + C A LUAD 153078256 + 153078236 153078276 41 AGGGAGAATCTCCCGACTTTCCAGAAGAGTTAGAAAAATGA AGGGAGAATCTCCCGACTTTCAAGAAGAGTTAGAAAAATGA < 41bp 0.532798558449233 0.764692400808931 0.41058636 0.29295254 prediction 0.463787684719396 Functional Gain - VIP ENSG00000146469 CDS Human protein_coding chr6:153078256 chr6:153078257 nonsynonymous SNV 0.990 0 22 hm5C_associated_SNPs_114414 0 0 0 0 3 VIP chr6:153078231 3'AG 153078231 Downstream 27bp
chr6 153078257 153078257 1 + C A LUAD 153078256 + 153078236 153078276 41 AGGGAGAATCTCCCGACTTTCCAGAAGAGTTAGAAAAATGA AGGGAGAATCTCCCGACTTTCAAGAAGAGTTAGAAAAATGA < 41bp 0.532798558449233 0.764692400808931 0.41058636 0.29295254 prediction 0.463787684719396 Functional Gain - VIP ENSG00000146469 CDS Human protein_coding chr6:153078256 chr6:153078257 nonsynonymous SNV 0.990 0 22 hm5C_associated_SNPs_114414 0 0 0 0 3 VIP chr6:153078234 3'AG 153078234 Downstream 24bp
chr6 153078257 153078257 1 + C A LUAD 153078256 + 153078236 153078276 41 AGGGAGAATCTCCCGACTTTCCAGAAGAGTTAGAAAAATGA AGGGAGAATCTCCCGACTTTCAAGAAGAGTTAGAAAAATGA < 41bp 0.532798558449233 0.764692400808931 0.41058636 0.29295254 prediction 0.463787684719396 Functional Gain - VIP ENSG00000146469 CDS Human protein_coding chr6:153078256 chr6:153078257 nonsynonymous SNV 0.990 0 22 hm5C_associated_SNPs_114414 0 0 0 0 3 VIP chr6:153078319 5'GT 153078319 Upstream 63bp
chr17 79077502 79077502 1 + C T STAD 79077501 + 79077481 79077521 41 CAAGCCCCTGCCGGTGCCCCCCGAGCTGGCACCGTTCGTGG CAAGCCCCTGCCGGTGCCCCCTGAGCTGGCACCGTTCGTGG < 41bp 0.500496308951849 0.732381012952475 0.3717317 0.3406788 prediction 0.463769408001253 Functional Gain - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79077501 chr17:79077502 synonymous SNV . 0 22 hm5C_associated_SNPs_114419 0 0 0 0 1 BAIAP2 chr17:79077523 5'GT 79077523 Upstream 22bp
chr15 74178467 74178467 1 + C A LUAD 74178463 + 74178443 74178483 41 GGCGTGGCCAAGAACCTAGACATGCTCAGCACCCTGATCAC GGCGTGGCCAAGAACCTAGACATGATCAGCACCCTGATCAC < 41bp 0.305209902853185 0.731884101710068 0.011564672 0.036142856 prediction 0.463768203420136 Functional Gain - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74178463 chr15:74178467 nonsynonymous SNV 0.191 3 25 hm5C_associated_SNPs_114420 0 0 0 0 2 TBC1D21 chr15:74178419 3'AG 74178419 Downstream 49bp
chr15 74178467 74178467 1 + C A LUAD 74178463 + 74178443 74178483 41 GGCGTGGCCAAGAACCTAGACATGCTCAGCACCCTGATCAC GGCGTGGCCAAGAACCTAGACATGATCAGCACCCTGATCAC < 41bp 0.305209902853185 0.731884101710068 0.011564672 0.036142856 prediction 0.463768203420136 Functional Gain - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74178463 chr15:74178467 nonsynonymous SNV 0.191 3 25 hm5C_associated_SNPs_114420 0 0 0 0 2 TBC1D21 chr15:74178515 5'GT 74178515 Upstream 49bp
chr1 71532583 71532583 1 - G C BLCA 71532584 - 71532564 71532604 41 TCCCACAGGGGCTCTTCTTCCCCACGAAAAAGATCTTATTC TCCCACAGGGGCTCTTCTTCCGCACGAAAAAGATCTTATTC < 41bp 0.421763327198749 0.731877264285982 0.043350726 0.08548227 prediction 0.463754528571965 Functional Gain - ZRANB2 ENSG00000132485 CDS Human protein_coding chr1:71532584 chr1:71532583 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_114422 0 0 1 0 1 ZRANB2 chr1:71532617 3'AG 71532617 Downstream 35bp
chr1 29391656 29391656 1 + C T SKCM 29391655 + 29391635 29391675 41 CTTAACATCAATGGGCAAATCCCCACAGGAGAAGGAGTGAG CTTAACATCAATGGGCAAATCTCCACAGGAGAAGGAGTGAG < 41bp 0.465630702610832 0.731877210299328 0.13612157 0.96463525 prediction 0.463754420598656 Functional Gain - EPB41 ENSG00000159023 CDS Human protein_coding chr1:29391655 chr1:29391656 nonsynonymous SNV 0.958 3 22 hm5C_associated_SNPs_114423 0 0 1 0 1 EPB41 chr1:29391670 5'GT 29391670 Upstream 15bp
chr10 103987414 103987414 1 + C A COAD 103987413 + 103987393 103987433 41 TTCCCCATAGCCCTGATCTACCTGGTTCTCATCGCTGTGGG TTCCCCATAGCCCTGATCTACATGGTTCTCATCGCTGTGGG < 41bp 0.579763830721889 0.811639856883903 0.18554178 0.25006834 prediction 0.463752052324028 Functional Gain - ELOVL3 ENSG00000119915 CDS Human protein_coding chr10:103987413 chr10:103987414 nonsynonymous SNV 0.803 2 22 hm5C_associated_SNPs_114424 0 0 0 0 1 ELOVL3 chr10:103987383 3'AG 103987383 Downstream 32bp
chr6 43127577 43127577 1 + C A rs55921533 43127576 + 43127556 43127596 41 GCCGCTGCGCTGGATGTCCCCCGAGGCCATCCTGGAGGGTG GCCGCTGCGCTGGATGTCCCCAGAGGCCATCCTGGAGGGTG < 41bp 0.565046328399019 0.796921661714259 0.66233593 0.9141768 prediction 0.463750666630481 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43127576 chr6:43127577 synonymous SNV . 0 22 hm5C_associated_SNPs_114425 0 0 1 0 1 PTK7 chr6:43127526 3'AG 43127526 Downstream 52bp
chr2 27666025 27666025 1 + A G rs116380288 27666022 + 27666002 27666042 41 GCCTCCTTCTTGCTGTGTCACTCACTGTGGCCAACGGTGGC GCCTCCTTCTTGCTGTGTCACTCGCTGTGGCCAACGGTGGC < 41bp 0.482703695347443 0.731873864411504 0.050488383 0.04195386 prediction 0.463747728823008 Functional Gain - KRTCAP3 ENSG00000157992 CDS Human protein_coding chr2:27666022 chr2:27666025 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_114427 0 0 0 0 1 KRTCAP3 chr2:27665941 3'AG 27665941 Downstream 85bp
chr5 143853311 143853311 1 + C A LUSC 143853307 + 143853287 143853327 41 AGAAGGGGAGAGCGGCACGTCTTGCAATGACCTCTCCACAT AGAAGGGGAGAGCGGCACGTCTTGAAATGACCTCTCCACAT < 41bp 0.326905290557452 0.731871753247462 0.03318423 0.36004424 prediction 0.463743506494923 Functional Gain - KCTD16 ENSG00000183775 CDS Human protein_coding chr5:143853307 chr5:143853311 stopgain 0.997 0 25 hm5C_associated_SNPs_114429 0 0 0 0 1 KCTD16 chr5:143853223 3'AG 143853223 Downstream 89bp
chr1 113238173 113238173 1 + C T UCEC 113238172 + 113238152 113238192 41 CTGGCCCCCAGCAGGGACATCCGCATGGTACCTGAGGACAT CTGGCCCCCAGCAGGGACATCTGCATGGTACCTGAGGACAT < 41bp 0.465687876225058 0.731862147561944 0.0716317 0.77093554 prediction 0.463724295123888 Functional Gain - MOV10 ENSG00000155363 CDS Human protein_coding chr1:113238172 chr1:113238173 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_114431 0 0 1 0 1 MOV10 chr1:113238196 5'GT 113238196 Upstream 24bp
chr6 138202265 138202265 1 + C T UCEC 138202264 + 138202244 138202284 41 TGCAAGAACATCCTGGCCTGCCGCAGCGAGGAGCTCTGCAT TGCAAGAACATCCTGGCCTGCTGCAGCGAGGAGCTCTGCAT < 41bp 0.561771822022138 0.793629123691466 0.2184721 0.22003552 prediction 0.463714603338655 Functional Gain - TNFAIP3 ENSG00000118503 CDS Human protein_coding chr6:138202264 chr6:138202265 nonsynonymous SNV 0.976 0 22 hm5C_associated_SNPs_114433 0 0 0 0 1 TNFAIP3 chr6:138202172 3'AG 138202172 Downstream 94bp
chr7 100466486 100466486 1 + C T SKCM 100466485 + 100466465 100466505 41 AGAGGAGGCGAGCACGGGCCCCAGGTGAGCCCTGGGGAACT AGAGGAGGCGAGCACGGGCCCTAGGTGAGCCCTGGGGAACT < 41bp 0.510501314885583 0.742358220878544 0.7485709 0.49046612 prediction 0.463713811985922 Functional Gain - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100466485 chr7:100466486 stopgain 0.312 0 22 hm5C_associated_SNPs_114434 0 0 1 0 1 TRIP6 chr7:100466488 5'GT 100466488 Upstream 3bp
chr19 41630762 41630762 1 + C T COAD 41630761 + 41630741 41630781 41 ACATCATCCCCATGAACTTGCCGCACCGCGTCACTAGGGAC ACATCATCCCCATGAACTTGCTGCACCGCGTCACTAGGGAC < 41bp 0.535985071554799 0.767841881354733 0.013150603 0.056473255 prediction 0.463713619599869 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41630761 chr19:41630762 nonsynonymous SNV 0.044 2 22 hm5C_associated_SNPs_114435 0 0 0 0 1 CYP2F1 chr19:41630811 5'GT 41630811 Upstream 50bp
chr17 18781016 18781016 1 + T C STAD 18781014 + 18780994 18781034 41 CTGTGTCTTTGTTACAGGGACGTGAACACCACCATCATGGA CTGTGTCTTTGTTACAGGGACGCGAACACCACCATCATGGA < 41bp 0.443945979485457 0.731853639707651 0.061345577 0.076042205 prediction 0.463707279415303 Functional Gain - PRPSAP2 ENSG00000141127 CDS Human protein_coding chr17:18781014 chr17:18781016 nonsynonymous SNV 0.988 2 23 hm5C_associated_SNPs_114437 0 0 1 0 1 PRPSAP2 chr17:18781011 3'AG 18781011 Downstream 6bp
chr3 48423210 48423210 1 + C T SKCM 48423209 + 48423189 48423229 41 GCATATGAGATCGCAAGTTTCCAGGTGGCAGCTCATCTGAA GCATATGAGATCGCAAGTTTCTAGGTGGCAGCTCATCTGAA < 41bp 0.507861406210831 0.739708094439228 0.8841089 0.8392452 prediction 0.463693376456794 Functional Gain - FBXW12 ENSG00000164049 CDS Human protein_coding chr3:48423209 chr3:48423210 stopgain 0.001 0 22 hm5C_associated_SNPs_114440 0 0 0 0 1 FBXW12 chr3:48423190 3'AG 48423190 Downstream 21bp
chr3 127325137 127325137 1 + C T PAAD 127325136 + 127325116 127325156 41 ATCACCAACCACATCCATGTCCGCATCTCCCACCTGCCTCT ATCACCAACCACATCCATGTCTGCATCTCCCACCTGCCTCT < 41bp 0.582997698206788 0.814842434663589 0.09623185 0.1426701 prediction 0.463689472913601 Functional Gain - MCM2 ENSG00000073111 CDS Human protein_coding chr3:127325136 chr3:127325137 nonsynonymous SNV 0.959 4 22 hm5C_associated_SNPs_114442 0 0 1 0 1 MCM2 chr3:127325180 5'GT 127325180 Upstream 44bp
chr21 45786686 45786686 1 + T C PRAD 45786684 + 45786664 45786704 41 TCCAGCGTGATCTACCACCTCATGACCCAGCACTGGGGGCT TCCAGCGTGATCTACCACCTCACGACCCAGCACTGGGGGCT < 41bp 0.450097540008501 0.731842243604181 0.11269888 0.099828154 prediction 0.463684487208363 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45786684 chr21:45786686 nonsynonymous SNV 0.963 1 23 hm5C_associated_SNPs_114444 0 0 0 0 1 TRPM2 chr21:45786637 3'AG 45786637 Downstream 50bp
chr1 906291 906291 1 + C T rs538928859 906290 + 906270 906310 41 GCACCCCTCCTGGTGCTCTGCCCCAGCCGGGCCGAGCTGGA GCACCCCTCCTGGTGCTCTGCTCCAGCCGGGCCGAGCTGGA < 41bp 0.576472825450078 0.808295183632869 0.31002596 0.8994421 prediction 0.463644716365581 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:906290 chr1:906291 nonsynonymous SNV 0.043 0 22 hm5C_associated_SNPs_114447 0 0 0 0 2 PLEKHN1 chr1:906259 3'AG 906259 Downstream 33bp
chr1 906291 906291 1 + C T rs538928859 906290 + 906270 906310 41 GCACCCCTCCTGGTGCTCTGCCCCAGCCGGGCCGAGCTGGA GCACCCCTCCTGGTGCTCTGCTCCAGCCGGGCCGAGCTGGA < 41bp 0.576472825450078 0.808295183632869 0.31002596 0.8994421 prediction 0.463644716365581 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:906290 chr1:906291 nonsynonymous SNV 0.043 0 22 hm5C_associated_SNPs_114447 0 0 0 0 2 PLEKHN1 chr1:906386 5'GT 906386 Upstream 96bp
chr19 45303666 45303666 1 + C G LUAD 45303662 + 45303642 45303682 41 TCCTAAAGGGGAACTCCCCTCCAGCTGCGCTGGGACCCCAG TCCTAAAGGGGAACTCCCCTCCAGGTGCGCTGGGACCCCAG < 41bp 0.443908550290663 0.731822145517892 0.8046019 0.94314146 prediction 0.463644291035785 Functional Gain - CBLC ENSG00000142273 CDS Human protein_coding chr19:45303662 chr19:45303666 nonsynonymous SNV 0.038 2 25 hm5C_associated_SNPs_114448 0 0 0 0 2 CBLC chr19:45303638 3'AG 45303638 Downstream 29bp
chr19 45303666 45303666 1 + C G LUAD 45303662 + 45303642 45303682 41 TCCTAAAGGGGAACTCCCCTCCAGCTGCGCTGGGACCCCAG TCCTAAAGGGGAACTCCCCTCCAGGTGCGCTGGGACCCCAG < 41bp 0.443908550290663 0.731822145517892 0.8046019 0.94314146 prediction 0.463644291035785 Functional Gain - CBLC ENSG00000142273 CDS Human protein_coding chr19:45303662 chr19:45303666 nonsynonymous SNV 0.038 2 25 hm5C_associated_SNPs_114448 0 0 0 0 2 CBLC chr19:45303707 5'GT 45303707 Upstream 42bp
chr15 34520687 34520687 1 + T C rs116858574 34520685 + 34520665 34520705 41 CTTCAGGGTTTGGTCTATCTCATTGGGAACCTGATGGGTTT CTTCAGGGTTTGGTCTATCTCACTGGGAACCTGATGGGTTT < 41bp 0.560134439151355 0.791952366187594 0.37702715 0.40482867 prediction 0.463635854072478 Functional Gain - EMC4 ENSG00000128463 CDS Human protein_coding chr15:34520685 chr15:34520687 nonsynonymous SNV 0.990 2 23 hm5C_associated_SNPs_114451 0 0 1 0 1 EMC4 chr15:34520630 3'AG 34520630 Downstream 58bp
chr7 2409186 2409186 1 + C A HNSC 2409185 + 2409165 2409205 41 GATATTCCAGCCAGGGTAACCCTGATGCAGCTCCCTACCAG GATATTCCAGCCAGGGTAACCATGATGCAGCTCCCTACCAG < 41bp 0.478839830514603 0.73180466843345 0.21383533 0.24008384 prediction 0.463609336866899 Functional Gain - EIF3B ENSG00000106263 CDS Human protein_coding chr7:2409185 chr7:2409186 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_114454 0 0 1 0 1 EIF3B chr7:2409107 3'AG 2409107 Downstream 80bp
chr6 80383448 80383448 1 + C A LUSC 80383447 + 80383427 80383467 41 TGGATGTACAAAAACGTCCCCCCGGAAAAGAAACCCACTCA TGGATGTACAAAAACGTCCCCACGGAAAAGAAACCCACTCA < 41bp 0.476845778804003 0.731799944542672 0.03129223 0.08106652 prediction 0.463599889085344 Functional Gain - SH3BGRL2 ENSG00000198478 CDS Human protein_coding chr6:80383447 chr6:80383448 nonsynonymous SNV 0.928 0 22 hm5C_associated_SNPs_114455 0 0 1 0 1 SH3BGRL2 chr6:80383516 5'GT 80383516 Upstream 69bp
chr1 205561289 205561289 1 + C A UCEC 205561288 + 205561268 205561308 41 GTTGGCGTGGTGGTGACGTTCCTGGTGCTGCTTATTTTCTC GTTGGCGTGGTGGTGACGTTCATGGTGCTGCTTATTTTCTC < 41bp 0.569323680833726 0.801113405551316 0.069316834 0.24152389 prediction 0.463579449435179 Functional Gain - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561288 chr1:205561289 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_114458 0 0 0 10 1 MFSD4A chr1:205561268 3'AG 205561268 Downstream 22bp
chr15 29346097 29346097 1 + C T STAD 29346096 + 29346076 29346116 41 TGAACGACTGCCATGGCCCACCGGAAGCTTGAGAGCGTGGG TGAACGACTGCCATGGCCCACTGGAAGCTTGAGAGCGTGGG < 41bp 0.542486841455137 0.774271320971549 0.13916823 0.110222906 prediction 0.463568959032824 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29346096 chr15:29346097 nonsynonymous SNV 0.977 4 22 hm5C_associated_SNPs_114459 0 0 1 0 1 APBA2 chr15:29346048 3'AG 29346048 Downstream 50bp
chr1 60073487 60073487 1 + C T SKCM 60073486 + 60073466 60073506 41 TCTTTCCAGATCAGCAAAGACCCGATTTTTGTACCAGGCGT TCTTTCCAGATCAGCAAAGACTCGATTTTTGTACCAGGCGT < 41bp 0.520687588380067 0.752463410857287 0.33973354 0.9245822 prediction 0.46355164495444 Functional Gain - FGGY ENSG00000172456 CDS Human protein_coding chr1:60073486 chr1:60073487 nonsynonymous SNV 0.982 2 22 hm5C_associated_SNPs_114463 0 0 0 0 2 FGGY chr1:60073475 3'AG 60073475 Downstream 13bp
chr1 60073487 60073487 1 + C T SKCM 60073486 + 60073466 60073506 41 TCTTTCCAGATCAGCAAAGACCCGATTTTTGTACCAGGCGT TCTTTCCAGATCAGCAAAGACTCGATTTTTGTACCAGGCGT < 41bp 0.520687588380067 0.752463410857287 0.33973354 0.9245822 prediction 0.46355164495444 Functional Gain - FGGY ENSG00000172456 CDS Human protein_coding chr1:60073486 chr1:60073487 nonsynonymous SNV 0.982 2 22 hm5C_associated_SNPs_114463 0 0 0 0 2 FGGY chr1:60073582 5'GT 60073582 Upstream 96bp
chr19 58141823 58141823 1 + C T rs140201783 58141822 + 58141802 58141842 41 CGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAG CGATTCTCCTGCCTCAGCCTCTCAAGTAGCTGGGACTACAG < 41bp 0.472184386133795 0.731770799121079 0.11200175 0.37527505 prediction 0.463541598242159 Functional Gain - ZNF134;ZNF211 ENSG00000121417 CDS Human protein_coding chr19:58141822 chr19:58141823 synonymous SNV . 0 22 hm5C_associated_SNPs_114464 0 0 0 0 1 ZNF134;ZNF211 chr19:58141862 5'GT 58141862 Upstream 40bp
chr22 44559805 44559805 1 + C T COAD 44559804 + 44559784 44559824 41 TCAAGAAACCCAAGGCTCGTCCTGAAGGTAATGCCCCTGGC TCAAGAAACCCAAGGCTCGTCTTGAAGGTAATGCCCCTGGC < 41bp 0.471363458047063 0.731769549427874 0.38196918 0.31955972 prediction 0.463539098855747 Functional Gain - PARVB ENSG00000188677 CDS Human protein_coding chr22:44559804 chr22:44559805 nonsynonymous SNV 0.918 4 22 hm5C_associated_SNPs_114466 0 0 0 0 2 PARVB chr22:44559738 3'AG 44559738 Downstream 68bp
chr22 44559805 44559805 1 + C T COAD 44559804 + 44559784 44559824 41 TCAAGAAACCCAAGGCTCGTCCTGAAGGTAATGCCCCTGGC TCAAGAAACCCAAGGCTCGTCTTGAAGGTAATGCCCCTGGC < 41bp 0.471363458047063 0.731769549427874 0.38196918 0.31955972 prediction 0.463539098855747 Functional Gain - PARVB ENSG00000188677 CDS Human protein_coding chr22:44559804 chr22:44559805 nonsynonymous SNV 0.918 4 22 hm5C_associated_SNPs_114466 0 0 0 0 2 PARVB chr22:44559810 5'GT 44559810 Upstream 6bp
chr11 46341881 46341881 1 + T G rs544539212 46341878 + 46341858 46341898 41 ATGGGAAGATGGCCGCAGCACCCTGCTGCCCATGGAGCCCC ATGGGAAGATGGCCGCAGCACCCGGCTGCCCATGGAGCCCC < 41bp 0.326811558253494 0.731762944874135 0.041681886 0.19033477 prediction 0.463525889748269 Functional Gain - CREB3L1 ENSG00000157613 CDS Human protein_coding chr11:46341878 chr11:46341881 nonsynonymous SNV 0.849 2 24 hm5C_associated_SNPs_114467 0 0 0 0 1 CREB3L1 chr11:46341815 3'AG 46341815 Downstream 67bp
chr9 131046910 131046910 1 + A G KICH 131046907 + 131046887 131046927 41 GGAGATCTCCCAGTTCGTATCTGAGTAAGTTTCATTGGGTT GGAGATCTCCCAGTTCGTATCTGGGTAAGTTTCATTGGGTT < 41bp 0.520413014968612 0.752174647617915 0.61338204 0.8936168 prediction 0.463523265298606 Functional Gain - SWI5 ENSG00000175854 CDS Human protein_coding chr9:131046907 chr9:131046910 nonsynonymous SNV 0.975 4 24 hm5C_associated_SNPs_114468 0 0 1 0 1 SWI5 chr9:131046910 5'GT 131046910 Upstream 1bp
chr20 47570302 47570302 1 + C T SKCM 47570301 + 47570281 47570321 41 CACAGAAAATGGAGACGCACCCAGAGAAAGAGGCTCATCAC CACAGAAAATGGAGACGCACCTAGAGAAAGAGGCTCATCAC < 41bp 0.545652132814282 0.777406607577434 0.40678936 0.32687196 prediction 0.463508949526303 Functional Gain - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47570301 chr20:47570302 synonymous SNV . 0 22 hm5C_associated_SNPs_114471 0 0 1 0 1 ARFGEF2 chr20:47570327 5'GT 47570327 Upstream 26bp
chr5 916041 916041 1 + C T BLCA 916040 + 916020 916060 41 AAGAGCGAGGGCCTCAGCGGCCGGGTCCTGAGAAAACTCCC AAGAGCGAGGGCCTCAGCGGCTGGGTCCTGAGAAAACTCCC < 41bp 0.533633967702798 0.765387335923396 0.25488055 0.24944258 prediction 0.463506736441196 Functional Gain - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:916040 chr5:916041 nonsynonymous SNV 0.995 5 22 hm5C_associated_SNPs_114472 0 0 1 0 2 TRIP13 chr5:916019 3'AG 916019 Downstream 23bp
chr5 916041 916041 1 + C T BLCA 916040 + 916020 916060 41 AAGAGCGAGGGCCTCAGCGGCCGGGTCCTGAGAAAACTCCC AAGAGCGAGGGCCTCAGCGGCTGGGTCCTGAGAAAACTCCC < 41bp 0.533633967702798 0.765387335923396 0.25488055 0.24944258 prediction 0.463506736441196 Functional Gain - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:916040 chr5:916041 nonsynonymous SNV 0.995 5 22 hm5C_associated_SNPs_114472 0 0 1 0 2 TRIP13 chr5:916088 5'GT 916088 Upstream 48bp
chr4 71467367 71467367 1 + C T SKCM 71467366 + 71467346 71467386 41 CATCAGATAAGCCACCAAAGCCTGAGGTACTTCCTTTCTCT CATCAGATAAGCCACCAAAGCTTGAGGTACTTCCTTTCTCT < 41bp 0.522914589000703 0.754656261725591 0.4483882 0.20101589 prediction 0.463483345449776 Functional Gain - AMBN ENSG00000178522 CDS Human protein_coding chr4:71467366 chr4:71467367 nonsynonymous SNV 0.243 1 22 hm5C_associated_SNPs_114474 0 0 0 0 1 AMBN chr4:71467371 5'GT 71467371 Upstream 5bp
chr5 137235266 137235266 1 + C T GBM 137235265 + 137235245 137235285 41 TGGGGATTTCTTGGTGTTTACCGAAATGGGGGATACATTTT TGGGGATTTCTTGGTGTTTACTGAAATGGGGGATACATTTT < 41bp 0.491306393087614 0.731741298859223 0.8478073 0.61559224 prediction 0.463482597718446 Functional Gain - PKD2L2 ENSG00000078795 CDS Human protein_coding chr5:137235265 chr5:137235266 stopgain 0.991 0 22 hm5C_associated_SNPs_114475 0 0 0 0 1 PKD2L2 chr5:137235205 3'AG 137235205 Downstream 62bp
chr4 146463782 146463782 1 + A G BLCA 146463779 + 146463759 146463799 41 GCCTCCTGAAGACCCCATGACCCAGGATGGCTCTCAGCCGA GCCTCCTGAAGACCCCATGACCCGGGATGGCTCTCAGCCGA < 41bp 0.495972333917255 0.73173897749691 0.090705454 0.32424802 prediction 0.46347795499382 Functional Gain - SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146463779 chr4:146463782 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_114476 0 0 0 0 2 SMAD1 chr4:146463734 3'AG 146463734 Downstream 49bp
chr4 146463782 146463782 1 + A G BLCA 146463779 + 146463759 146463799 41 GCCTCCTGAAGACCCCATGACCCAGGATGGCTCTCAGCCGA GCCTCCTGAAGACCCCATGACCCGGGATGGCTCTCAGCCGA < 41bp 0.495972333917255 0.73173897749691 0.090705454 0.32424802 prediction 0.46347795499382 Functional Gain - SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146463779 chr4:146463782 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_114476 0 0 0 0 2 SMAD1 chr4:146463850 5'GT 146463850 Upstream 69bp
chr3 193854764 193854764 1 + C T ESCA 193854763 + 193854743 193854783 41 TATGCAGAGCTCGCGGCATTCCAAGCTGGAGAAGGCGGACA TATGCAGAGCTCGCGGCATTCTAAGCTGGAGAAGGCGGACA < 41bp 0.480447731758423 0.731725412613721 0.44842595 0.47621647 prediction 0.463450825227441 Functional Gain - HES1 ENSG00000114315 CDS Human protein_coding chr3:193854763 chr3:193854764 synonymous SNV . 0 22 hm5C_associated_SNPs_114477 0 0 1 0 2 HES1 chr3:193854750 3'AG 193854750 Downstream 15bp
chr3 193854764 193854764 1 + C T ESCA 193854763 + 193854743 193854783 41 TATGCAGAGCTCGCGGCATTCCAAGCTGGAGAAGGCGGACA TATGCAGAGCTCGCGGCATTCTAAGCTGGAGAAGGCGGACA < 41bp 0.480447731758423 0.731725412613721 0.44842595 0.47621647 prediction 0.463450825227441 Functional Gain - HES1 ENSG00000114315 CDS Human protein_coding chr3:193854763 chr3:193854764 synonymous SNV . 0 22 hm5C_associated_SNPs_114477 0 0 1 0 2 HES1 chr3:193854837 5'GT 193854837 Upstream 74bp
chr13 46093222 46093222 1 + T C STAD 46093220 + 46093200 46093240 41 GTAGAACAGCTGGAGGAGTTCATGACAAAGGTATAGACCTT GTAGAACAGCTGGAGGAGTTCACGACAAAGGTATAGACCTT < 41bp 0.556729427659403 0.788453596739637 0.30400655 0.33600402 prediction 0.463448338160468 Functional Gain - COG3 ENSG00000136152 CDS Human protein_coding chr13:46093220 chr13:46093222 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_114478 0 0 0 0 1 COG3 chr13:46093229 5'GT 46093229 Upstream 8bp
chr1 203012543 203012543 1 + C A HNSC 203012542 + 203012522 203012562 41 CAGGAATTTGCCACCTTAACCCGGGAGCTGAGCATGTGTCG CAGGAATTTGCCACCTTAACCAGGGAGCTGAGCATGTGTCG < 41bp 0.468325717101103 0.731716634643087 0.9234437 0.9299805 prediction 0.463433269286175 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203012542 chr1:203012543 synonymous SNV . 0 22 hm5C_associated_SNPs_114481 0 0 1 0 2 PPFIA4 chr1:203012525 3'AG 203012525 Downstream 19bp
chr1 203012543 203012543 1 + C A HNSC 203012542 + 203012522 203012562 41 CAGGAATTTGCCACCTTAACCCGGGAGCTGAGCATGTGTCG CAGGAATTTGCCACCTTAACCAGGGAGCTGAGCATGTGTCG < 41bp 0.468325717101103 0.731716634643087 0.9234437 0.9299805 prediction 0.463433269286175 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203012542 chr1:203012543 synonymous SNV . 0 22 hm5C_associated_SNPs_114481 0 0 1 0 2 PPFIA4 chr1:203012626 5'GT 203012626 Upstream 84bp
chr19 10527645 10527645 1 + C G rs117320342 10527644 + 10527624 10527664 41 GAGGAGTCGCAGTGCCCTGTCCGTGGCAGGGACCGGGGACG GAGGAGTCGCAGTGCCCTGTCGGTGGCAGGGACCGGGGACG < 41bp 0.417460699875579 0.731712919436871 0.5389775 0.866892 prediction 0.463425838873743 Functional Gain - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10527644 chr19:10527645 synonymous SNV . 0 22 hm5C_associated_SNPs_114483 0 0 0 0 2 PDE4A chr19:10527560 3'AG 10527560 Downstream 86bp
chr19 10527645 10527645 1 + C G rs117320342 10527644 + 10527624 10527664 41 GAGGAGTCGCAGTGCCCTGTCCGTGGCAGGGACCGGGGACG GAGGAGTCGCAGTGCCCTGTCGGTGGCAGGGACCGGGGACG < 41bp 0.417460699875579 0.731712919436871 0.5389775 0.866892 prediction 0.463425838873743 Functional Gain - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10527644 chr19:10527645 synonymous SNV . 0 22 hm5C_associated_SNPs_114483 0 0 0 0 2 PDE4A chr19:10527666 5'GT 10527666 Upstream 22bp
chr14 74531573 74531573 1 - G A rs147004133 74531574 - 74531554 74531594 41 TTTGCCAATGTTCTCATTCACCGGCTCTCGATCCTCCTTCA TTTGCCAATGTTCTCATTCACTGGCTCTCGATCCTCCTTCA < 41bp 0.541252618479982 0.772965416813965 0.24978378 0.25084245 prediction 0.463425596667967 Functional Gain - ALDH6A1 ENSG00000119711 CDS Human protein_coding chr14:74531574 chr14:74531573 synonymous SNV . 0 22 hm5C_associated_SNPs_114484 0 0 1 0 2 ALDH6A1 chr14:74531525 5'GT 74531525 Upstream 49bp
chr14 74531573 74531573 1 - G A rs147004133 74531574 - 74531554 74531594 41 TTTGCCAATGTTCTCATTCACCGGCTCTCGATCCTCCTTCA TTTGCCAATGTTCTCATTCACTGGCTCTCGATCCTCCTTCA < 41bp 0.541252618479982 0.772965416813965 0.24978378 0.25084245 prediction 0.463425596667967 Functional Gain - ALDH6A1 ENSG00000119711 CDS Human protein_coding chr14:74531574 chr14:74531573 synonymous SNV . 0 22 hm5C_associated_SNPs_114484 0 0 1 0 2 ALDH6A1 chr14:74531623 3'AG 74531623 Downstream 51bp
chr13 114507915 114507915 1 + C G OV 114507914 + 114507894 114507934 41 CCACCACAGACCCTCTACAACCCCGCCCAGCAGATCCTGGC CCACCACAGACCCTCTACAACGCCGCCCAGCAGATCCTGGC < 41bp 0.415685783812619 0.731704092388319 0.1196385 0.46444148 prediction 0.463408184776638 Functional Gain - TMEM255B ENSG00000184497 CDS Human protein_coding chr13:114507914 chr13:114507915 nonsynonymous SNV 0.239 0 22 hm5C_associated_SNPs_114485 0 0 0 0 2 TMEM255B chr13:114507858 3'AG 114507858 Downstream 58bp
chr13 114507915 114507915 1 + C G OV 114507914 + 114507894 114507934 41 CCACCACAGACCCTCTACAACCCCGCCCAGCAGATCCTGGC CCACCACAGACCCTCTACAACGCCGCCCAGCAGATCCTGGC < 41bp 0.415685783812619 0.731704092388319 0.1196385 0.46444148 prediction 0.463408184776638 Functional Gain - TMEM255B ENSG00000184497 CDS Human protein_coding chr13:114507914 chr13:114507915 nonsynonymous SNV 0.239 0 22 hm5C_associated_SNPs_114485 0 0 0 0 2 TMEM255B chr13:114508001 5'GT 114508001 Upstream 87bp
chr3 63976502 63976502 1 + T C CESC 63976500 + 63976480 63976520 41 CTTCGCTGCGCCCTCAACCTCATGGTGGAGAAGCATCTGAA CTTCGCTGCGCCCTCAACCTCACGGTGGAGAAGCATCTGAA < 41bp 0.445877572338304 0.731701180324911 0.42762154 0.4327959 prediction 0.463402360649821 Functional Gain - ATXN7 ENSG00000163635 CDS Human protein_coding chr3:63976500 chr3:63976502 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_114487 0 0 1 0 2 ATXN7 chr3:63976414 3'AG 63976414 Downstream 89bp
chr3 63976502 63976502 1 + T C CESC 63976500 + 63976480 63976520 41 CTTCGCTGCGCCCTCAACCTCATGGTGGAGAAGCATCTGAA CTTCGCTGCGCCCTCAACCTCACGGTGGAGAAGCATCTGAA < 41bp 0.445877572338304 0.731701180324911 0.42762154 0.4327959 prediction 0.463402360649821 Functional Gain - ATXN7 ENSG00000163635 CDS Human protein_coding chr3:63976500 chr3:63976502 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_114487 0 0 1 0 2 ATXN7 chr3:63976535 5'GT 63976535 Upstream 34bp
chr1 246810500 246810500 1 + C T SKCM 246810499 + 246810479 246810519 41 AGCCAACATACAGTGGAGCCCCTGGGGAGCAGTCCCTGCTG AGCCAACATACAGTGGAGCCCTTGGGGAGCAGTCCCTGCTG < 41bp 0.522376332783644 0.754073642974608 0.6618217 0.40862596 prediction 0.463394620381929 Functional Gain - CNST ENSG00000162852 CDS Human protein_coding chr1:246810499 chr1:246810500 synonymous SNV . 0 22 hm5C_associated_SNPs_114488 0 0 1 0 1 CNST chr1:246810441 3'AG 246810441 Downstream 60bp
chr19 12867040 12867040 1 + C A LUAD 12867036 + 12867016 12867056 41 ACTGGGATGCAGCCGAGGCTCGCGCCCCATACACAGCGGCT ACTGGGATGCAGCCGAGGCTCGCGACCCATACACAGCGGCT < 41bp 0.705686549754349 0.937383850954309 0.1438353 0.14672703 prediction 0.463394602399919 Functional Gain - BEST2 ENSG00000039987 CDS Human protein_coding chr19:12867036 chr19:12867040 nonsynonymous SNV 0.047 2 25 hm5C_associated_SNPs_114489 0 0 0 0 2 BEST2 chr19:12866955 3'AG 12866955 Downstream 86bp
chr19 12867040 12867040 1 + C A LUAD 12867036 + 12867016 12867056 41 ACTGGGATGCAGCCGAGGCTCGCGCCCCATACACAGCGGCT ACTGGGATGCAGCCGAGGCTCGCGACCCATACACAGCGGCT < 41bp 0.705686549754349 0.937383850954309 0.1438353 0.14672703 prediction 0.463394602399919 Functional Gain - BEST2 ENSG00000039987 CDS Human protein_coding chr19:12867036 chr19:12867040 nonsynonymous SNV 0.047 2 25 hm5C_associated_SNPs_114489 0 0 0 0 2 BEST2 chr19:12867109 5'GT 12867109 Upstream 70bp
chr20 11899206 11899206 1 + C A UCEC 11899205 + 11899185 11899225 41 CTCAGTAACAACAACCTTATCCCGGCCCCAAACTGGCAGGG CTCAGTAACAACAACCTTATCACGGCCCCAAACTGGCAGGG < 41bp 0.556180823067749 0.787876472212247 0.3189494 0.38757774 prediction 0.463391298288997 Functional Gain - BTBD3 ENSG00000132640 CDS Human protein_coding chr20:11899205 chr20:11899206 nonsynonymous SNV 0.975 1 22 hm5C_associated_SNPs_114491 0 0 1 0 1 BTBD3 chr20:11899249 5'GT 11899249 Upstream 44bp
chr12 113698217 113698217 1 + A G UCEC 113698214 + 113698194 113698234 41 ACGACTCCCAGGCCCCCAGTCTCAGCTCTGGGGGTGAGAGT ACGACTCCCAGGCCCCCAGTCTCGGCTCTGGGGGTGAGAGT < 41bp 0.544198351321573 0.775893924844679 0.06922543 0.23647073 prediction 0.463391147046213 Functional Gain - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113698214 chr12:113698217 nonsynonymous SNV 0.020 0 24 hm5C_associated_SNPs_114492 0 0 1 0 2 TPCN1 chr12:113698173 3'AG 113698173 Downstream 45bp
chr12 113698217 113698217 1 + A G UCEC 113698214 + 113698194 113698234 41 ACGACTCCCAGGCCCCCAGTCTCAGCTCTGGGGGTGAGAGT ACGACTCCCAGGCCCCCAGTCTCGGCTCTGGGGGTGAGAGT < 41bp 0.544198351321573 0.775893924844679 0.06922543 0.23647073 prediction 0.463391147046213 Functional Gain - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113698214 chr12:113698217 nonsynonymous SNV 0.020 0 24 hm5C_associated_SNPs_114492 0 0 1 0 2 TPCN1 chr12:113698297 5'GT 113698297 Upstream 81bp
chr20 1108135 1108135 1 + C A LIHC 1108134 + 1108114 1108154 41 GATTATATCGATGCAGAACACCTGGGTGACTTCCACAGGTA GATTATATCGATGCAGAACACATGGGTGACTTCCACAGGTA < 41bp 0.469246975922754 0.731689982407254 0.8397337 0.83224046 prediction 0.463379964814509 Functional Gain - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1108134 chr20:1108135 nonsynonymous SNV 0.991 4 22 hm5C_associated_SNPs_114494 0 0 1 0 2 PSMF1 chr20:1108069 3'AG 1108069 Downstream 67bp
chr20 1108135 1108135 1 + C A LIHC 1108134 + 1108114 1108154 41 GATTATATCGATGCAGAACACCTGGGTGACTTCCACAGGTA GATTATATCGATGCAGAACACATGGGTGACTTCCACAGGTA < 41bp 0.469246975922754 0.731689982407254 0.8397337 0.83224046 prediction 0.463379964814509 Functional Gain - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1108134 chr20:1108135 nonsynonymous SNV 0.991 4 22 hm5C_associated_SNPs_114494 0 0 1 0 2 PSMF1 chr20:1108151 5'GT 1108151 Upstream 17bp
chr13 28494600 28494600 1 + C A LUSC 28494599 + 28494579 28494619 41 GAGGGAGCCGAGCCGGGCGTCCTGGAGGAGCCCAACCGCGT GAGGGAGCCGAGCCGGGCGTCATGGAGGAGCCCAACCGCGT < 41bp 0.540044284138902 0.771732476096467 0.8856659 0.90295887 prediction 0.46337638391513 Functional Gain - PDX1 ENSG00000139515 CDS Human protein_coding chr13:28494599 chr13:28494600 nonsynonymous SNV 0.133 1 22 hm5C_associated_SNPs_114496 0 0 1 0 1 PDX1 chr13:28494681 5'GT 28494681 Upstream 82bp
chr1 15616138 15616138 1 + C T KICH 15616137 + 15616117 15616157 41 TCGTTCGTGGTGGACGACGCCCGCAAGCCACCCGTCATCAA TCGTTCGTGGTGGACGACGCCTGCAAGCCACCCGTCATCAA < 41bp 0.560472957185061 0.792160714953456 0.043902785 0.07289025 prediction 0.46337551553679 Functional Gain - FHAD1 ENSG00000142621 CDS Human protein_coding chr1:15616137 chr1:15616138 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_114497 0 0 0 0 1 FHAD1 chr1:15616162 5'GT 15616162 Upstream 25bp
chr2 210880706 210880706 1 + T C UCEC 210880704 + 210880684 210880724 41 CTTTTCTTTCTAGACATGCACATGATGGTGTCCAAGCCAGA CTTTTCTTTCTAGACATGCACACGATGGTGTCCAAGCCAGA < 41bp 0.452567392176991 0.73168509373701 0.16410473 0.10192767 prediction 0.463370187474019 Functional Gain - RPE ENSG00000197713 CDS Human protein_coding chr2:210880704 chr2:210880706 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_114498 0 0 0 0 1 RPE chr2:210880697 3'AG 210880697 Downstream 10bp
chr17 78069227 78069227 1 + C A KIRC 78069226 + 78069206 78069246 41 CACAAGCAGCTTGAGCTGCGCCGGAAAATCAGGGACGTTCG CACAAGCAGCTTGAGCTGCGCAGGAAAATCAGGGACGTTCG < 41bp 0.588607715659068 0.820291776209801 0.35001367 0.61287266 prediction 0.463368121101466 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78069226 chr17:78069227 synonymous SNV . 0 22 hm5C_associated_SNPs_114499 0 0 0 0 1 CCDC40 chr17:78069250 5'GT 78069250 Upstream 24bp
chr19 13875777 13875777 1 + C G rs558173579 13875773 + 13875753 13875793 41 CGGGGGACCGGGACTCGCCGCGCTCGTGGCCTTCGTGCGCG CGGGGGACCGGGACTCGCCGCGCTGGTGGCCTTCGTGCGCG < 41bp 0.609172088359203 0.840839455514586 0.28280932 0.40583917 prediction 0.463334734310765 Functional Gain - MRI1 ENSG00000037757 CDS Human protein_coding chr19:13875773 chr19:13875777 synonymous SNV . 0 25 hm5C_associated_SNPs_114502 0 0 0 0 1 MRI1 chr19:13875685 3'AG 13875685 Downstream 93bp
chr10 27462145 27462145 1 + C T rs147776224 27462144 + 27462124 27462164 41 TGATGGGCGAATTCTAGGAACCCCAGACTACCTTGCACCTG TGATGGGCGAATTCTAGGAACTCCAGACTACCTTGCACCTG < 41bp 0.594365159695137 0.826024199990244 0.37275124 0.9280391 prediction 0.463318080590214 Functional Gain - MASTL ENSG00000120539 CDS Human protein_coding chr10:27462144 chr10:27462145 synonymous SNV . 0 22 hm5C_associated_SNPs_114504 0 0 1 0 3 MASTL chr10:27462047 3'AG 27462047 Downstream 99bp
chr10 27462145 27462145 1 + C T rs147776224 27462144 + 27462124 27462164 41 TGATGGGCGAATTCTAGGAACCCCAGACTACCTTGCACCTG TGATGGGCGAATTCTAGGAACTCCAGACTACCTTGCACCTG < 41bp 0.594365159695137 0.826024199990244 0.37275124 0.9280391 prediction 0.463318080590214 Functional Gain - MASTL ENSG00000120539 CDS Human protein_coding chr10:27462144 chr10:27462145 synonymous SNV . 0 22 hm5C_associated_SNPs_114504 0 0 1 0 3 MASTL chr10:27462050 3'AG 27462050 Downstream 96bp
chr10 27462145 27462145 1 + C T rs147776224 27462144 + 27462124 27462164 41 TGATGGGCGAATTCTAGGAACCCCAGACTACCTTGCACCTG TGATGGGCGAATTCTAGGAACTCCAGACTACCTTGCACCTG < 41bp 0.594365159695137 0.826024199990244 0.37275124 0.9280391 prediction 0.463318080590214 Functional Gain - MASTL ENSG00000120539 CDS Human protein_coding chr10:27462144 chr10:27462145 synonymous SNV . 0 22 hm5C_associated_SNPs_114504 0 0 1 0 3 MASTL chr10:27462188 5'GT 27462188 Upstream 44bp
chr1 227921725 227921725 1 - G A UCEC 227921726 - 227921706 227921746 41 GCCCTCCTCACAGGGACTTTCCGGTGGAGGACGTTTTCACC GCCCTCCTCACAGGGACTTTCTGGTGGAGGACGTTTTCACC < 41bp 0.520861934043049 0.752518566866159 0.72806144 0.27685803 prediction 0.46331326564622 Functional Gain - JMJD4 ENSG00000081692 CDS Human protein_coding chr1:227921726 chr1:227921725 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_114506 0 0 0 0 1 JMJD4 chr1:227921733 3'AG 227921733 Downstream 9bp
chr16 2647748 2647748 1 + C G BLCA 2647747 + 2647727 2647767 41 AGGCAGCGATACCAGAGCCACCCGGACGCCGCTGTGCAGTG AGGCAGCGATACCAGAGCCACGCGGACGCCGCTGTGCAGTG < 41bp 0.419093217464288 0.731646514007072 0.48759258 0.8721851 prediction 0.463293028014144 Functional Gain - PDPK1 ENSG00000140992 CDS Human protein_coding chr16:2647747 chr16:2647748 nonsynonymous SNV 0.463 0 22 hm5C_associated_SNPs_114509 0 0 1 0 1 PDPK1 chr16:2647652 3'AG 2647652 Downstream 97bp
chr19 50208370 50208370 1 + C T UCEC 50208369 + 50208349 50208389 41 TGAACCGCCAGGAGATACCCCCGGTGAGAGGGCCCCAGTGG TGAACCGCCAGGAGATACCCCTGGTGAGAGGGCCCCAGTGG < 41bp 0.495465901812531 0.731646437985135 0.80864084 0.4711052 prediction 0.463292875970271 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50208369 chr19:50208370 nonsynonymous SNV 0.047 4 22 hm5C_associated_SNPs_114510 0 0 0 0 2 CPT1C chr19:50208297 3'AG 50208297 Downstream 74bp
chr19 50208370 50208370 1 + C T UCEC 50208369 + 50208349 50208389 41 TGAACCGCCAGGAGATACCCCCGGTGAGAGGGCCCCAGTGG TGAACCGCCAGGAGATACCCCTGGTGAGAGGGCCCCAGTGG < 41bp 0.495465901812531 0.731646437985135 0.80864084 0.4711052 prediction 0.463292875970271 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50208369 chr19:50208370 nonsynonymous SNV 0.047 4 22 hm5C_associated_SNPs_114510 0 0 0 0 2 CPT1C chr19:50208371 5'GT 50208371 Upstream 2bp
chr7 87329802 87329802 1 + C T UCEC 87329801 + 87329781 87329821 41 GACTATATCAGAGTGGCTTGCCGGAAAGTTTCACAGAATTG GACTATATCAGAGTGGCTTGCTGGAAAGTTTCACAGAATTG < 41bp 0.485901451830133 0.731642804331272 0.4871862 0.26161987 prediction 0.463285608662545 Functional Gain - RUNDC3B ENSG00000105784 CDS Human protein_coding chr7:87329801 chr7:87329802 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_114513 0 0 0 0 2 RUNDC3B chr7:87329737 3'AG 87329737 Downstream 66bp
chr7 87329802 87329802 1 + C T UCEC 87329801 + 87329781 87329821 41 GACTATATCAGAGTGGCTTGCCGGAAAGTTTCACAGAATTG GACTATATCAGAGTGGCTTGCTGGAAAGTTTCACAGAATTG < 41bp 0.485901451830133 0.731642804331272 0.4871862 0.26161987 prediction 0.463285608662545 Functional Gain - RUNDC3B ENSG00000105784 CDS Human protein_coding chr7:87329801 chr7:87329802 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_114513 0 0 0 0 2 RUNDC3B chr7:87329870 5'GT 87329870 Upstream 69bp
chr11 93800692 93800692 1 + C T rs141998596 93800691 + 93800671 93800711 41 GATACCTCTTCGGAAACTTCCCGGAGCCTGATATGTGTGTT GATACCTCTTCGGAAACTTCCTGGAGCCTGATATGTGTGTT < 41bp 0.553450673173164 0.785089113497199 0.38760203 0.258523 prediction 0.46327688064807 Functional Gain - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93800691 chr11:93800692 nonsynonymous SNV 0.984 5 22 hm5C_associated_SNPs_114516 0 0 0 0 1 HEPHL1 chr11:93800662 3'AG 93800662 Downstream 31bp
chr11 7535343 7535343 1 + C A rs558309980 7535342 + 7535322 7535362 41 GCCCGGAGAGGAGCCTCGGCCCCGTACCCAGGTCAGTGGGC GCCCGGAGAGGAGCCTCGGCCACGTACCCAGGTCAGTGGGC < 41bp 0.516216994049124 0.747852219580356 0.18743932 0.20497999 prediction 0.463270451062465 Functional Gain - PPFIBP2 ENSG00000166387 UTR5 Human protein_coding chr11:7535342 chr11:7535343 . . 0 22 hm5C_associated_SNPs_114518 0 0 0 0 1 PPFIBP2 chr11:7535352 5'GT 7535352 Upstream 10bp
chr12 56364837 56364837 1 + C T UCEC 56364836 + 56364816 56364856 41 CCCCATTTTCAGGTGACTCGCCGGGCCCTATTCCCTGGAGA CCCCATTTTCAGGTGACTCGCTGGGCCCTATTCCCTGGAGA < 41bp 0.506337420488414 0.73797082968155 0.9078654 0.8882526 prediction 0.463266818386273 Functional Gain - CDK2 ENSG00000123374 CDS Human protein_coding chr12:56364836 chr12:56364837 nonsynonymous SNV 0.986 4 22 hm5C_associated_SNPs_114519 0 0 1 0 1 CDK2 chr12:56364828 3'AG 56364828 Downstream 10bp
chr12 6952813 6952813 1 + C A LUAD 6952809 + 6952789 6952829 41 CCTCCAGGTTATCTCTCCTGCTGCCGCTTCCTGGATGACAA CCTCCAGGTTATCTCTCCTGCTGCAGCTTCCTGGATGACAA < 41bp 0.301045618860025 0.731628310248769 0.120630085 0.16137213 prediction 0.463256620497537 Functional Gain - GNB3 ENSG00000111664 CDS Human protein_coding chr12:6952809 chr12:6952813 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_114520 0 0 0 0 3 GNB3 chr12:6952796 3'AG 6952796 Downstream 18bp
chr12 6952813 6952813 1 + C A LUAD 6952809 + 6952789 6952829 41 CCTCCAGGTTATCTCTCCTGCTGCCGCTTCCTGGATGACAA CCTCCAGGTTATCTCTCCTGCTGCAGCTTCCTGGATGACAA < 41bp 0.301045618860025 0.731628310248769 0.120630085 0.16137213 prediction 0.463256620497537 Functional Gain - GNB3 ENSG00000111664 CDS Human protein_coding chr12:6952809 chr12:6952813 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_114520 0 0 0 0 3 GNB3 chr12:6952859 5'GT 6952859 Upstream 47bp
chr12 6952813 6952813 1 + C A LUAD 6952809 + 6952789 6952829 41 CCTCCAGGTTATCTCTCCTGCTGCCGCTTCCTGGATGACAA CCTCCAGGTTATCTCTCCTGCTGCAGCTTCCTGGATGACAA < 41bp 0.301045618860025 0.731628310248769 0.120630085 0.16137213 prediction 0.463256620497537 Functional Gain - GNB3 ENSG00000111664 CDS Human protein_coding chr12:6952809 chr12:6952813 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_114520 0 0 0 0 3 GNB3 chr12:6952862 5'GT 6952862 Upstream 50bp
chr14 31348086 31348086 1 + A G UCEC 31348083 + 31348063 31348103 41 CCTGGTCGAGAAAACTATTCCTCAGTAGATGCCAATGGCAT CCTGGTCGAGAAAACTATTCCTCGGTAGATGCCAATGGCAT < 41bp 0.512165694790307 0.743789797418741 0.18582588 0.14204961 prediction 0.463248205256869 Functional Gain - COCH ENSG00000100473 CDS Human protein_coding chr14:31348083 chr14:31348086 synonymous SNV . 0 24 hm5C_associated_SNPs_114523 0 0 1 0 2 COCH chr14:31348017 3'AG 31348017 Downstream 70bp
chr14 31348086 31348086 1 + A G UCEC 31348083 + 31348063 31348103 41 CCTGGTCGAGAAAACTATTCCTCAGTAGATGCCAATGGCAT CCTGGTCGAGAAAACTATTCCTCGGTAGATGCCAATGGCAT < 41bp 0.512165694790307 0.743789797418741 0.18582588 0.14204961 prediction 0.463248205256869 Functional Gain - COCH ENSG00000100473 CDS Human protein_coding chr14:31348083 chr14:31348086 synonymous SNV . 0 24 hm5C_associated_SNPs_114523 0 0 1 0 2 COCH chr14:31348150 5'GT 31348150 Upstream 65bp
chr7 134222989 134222989 1 + C A LUAD 134222988 + 134222968 134223008 41 AGAGGAATGTGATTGTCATCCCCAAGTCTGTGACACCAGCA AGAGGAATGTGATTGTCATCCACAAGTCTGTGACACCAGCA < 41bp 0.573452747509449 0.805074968602341 0.08379501 0.044644624 prediction 0.463244442185782 Functional Gain - AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134222988 chr7:134222989 nonsynonymous SNV 0.940 4 22 hm5C_associated_SNPs_114524 0 0 0 0 2 AKR1B10 chr7:134222946 3'AG 134222946 Downstream 44bp
chr7 134222989 134222989 1 + C A LUAD 134222988 + 134222968 134223008 41 AGAGGAATGTGATTGTCATCCCCAAGTCTGTGACACCAGCA AGAGGAATGTGATTGTCATCCACAAGTCTGTGACACCAGCA < 41bp 0.573452747509449 0.805074968602341 0.08379501 0.044644624 prediction 0.463244442185782 Functional Gain - AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134222988 chr7:134222989 nonsynonymous SNV 0.940 4 22 hm5C_associated_SNPs_114524 0 0 0 0 2 AKR1B10 chr7:134223029 5'GT 134223029 Upstream 41bp
chr5 128320946 128320946 1 + C T SKCM 128320945 + 128320925 128320965 41 AAGAAAAACTGAGCACCTCACCTGATGAGCCCGTGCCACGC AAGAAAAACTGAGCACCTCACTTGATGAGCCCGTGCCACGC < 41bp 0.579870147485798 0.811486845107601 0.32121807 0.28700417 prediction 0.463233395243605 Functional Gain - SLC27A6 ENSG00000113396 CDS Human protein_coding chr5:128320945 chr5:128320946 nonsynonymous SNV 0.004 2 22 hm5C_associated_SNPs_114527 0 0 0 0 1 SLC27A6 chr5:128321029 5'GT 128321029 Upstream 84bp
chr3 33840375 33840375 1 + C G rs550876351 33840371 + 33840351 33840391 41 AGGAGCTCAGCAAGCTGCGCCGCGCCGCAGTCGGTCGTCCG AGGAGCTCAGCAAGCTGCGCCGCGGCGCAGTCGGTCGTCCG < 41bp 0.461358356491898 0.731613368825434 0.2311795 0.3365443 prediction 0.463226737650867 Functional Gain - PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33840371 chr3:33840375 nonsynonymous SNV 0.984 1 25 hm5C_associated_SNPs_114528 0 0 1 0 1 PDCD6IP chr3:33840429 5'GT 33840429 Upstream 55bp
chr10 88419212 88419212 1 + C T UCEC 88419211 + 88419191 88419231 41 ATCTTCATCTTCAGGGCCATCCGGGAGACAGGACGGTAAGA ATCTTCATCTTCAGGGCCATCTGGGAGACAGGACGGTAAGA < 41bp 0.529086653365188 0.760687032117875 0.8302584 0.5412029 prediction 0.463200757505375 Functional Gain - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88419211 chr10:88419212 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_114530 0 0 0 0 1 OPN4 chr10:88419225 5'GT 88419225 Upstream 14bp
chr1 111860311 111860311 1 + T C UCEC 111860309 + 111860289 111860329 41 TTATTATTCTGTAGGAAATGCGTGAAGCTTTTGAGCAGGAG TTATTATTCTGTAGGAAATGCGCGAAGCTTTTGAGCAGGAG < 41bp 0.472039778391974 0.731596461451559 0.08597496 0.14150375 prediction 0.463192922903118 Functional Gain - CHIA ENSG00000134216 CDS Human protein_coding chr1:111860309 chr1:111860311 stoploss . 0 23 hm5C_associated_SNPs_114535 0 0 0 0 1 CHIA chr1:111860303 3'AG 111860303 Downstream 9bp
chr1 11836682 11836682 1 + C G rs7538516 11836678 + 11836658 11836698 41 CTGTGGAAGATGCGGCTTTTCCAGCGCCAGTGGGCCAAGTA CTGTGGAAGATGCGGCTTTTCCAGGGCCAGTGGGCCAAGTA < 41bp 0.434477778859366 0.731594976083325 0.88912106 0.9169586 prediction 0.46318995216665 Functional Gain - C1orf167 ENSG00000215910 CDS Human protein_coding chr1:11836678 chr1:11836682 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_114537 0 0 0 0 1 C1orf167 chr1:11836695 5'GT 11836695 Upstream 14bp
chr22 48972369 48972369 1 + A G rs202010234 48972366 + 48972346 48972386 41 CCTCGTCCTAGTGATCCACGCGCAGTTCCTCAAAGAAGGTA CCTCGTCCTAGTGATCCACGCGCGGTTCCTCAAAGAAGGTA < 41bp 0.517793333829871 0.749386079362063 0.024573922 0.11415759 prediction 0.463185491064384 Functional Gain - FAM19A5 ENSG00000219438 CDS Human protein_coding chr22:48972366 chr22:48972369 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_114539 0 0 0 0 1 FAM19A5 chr22:48972383 5'GT 48972383 Upstream 15bp
chr1 154951243 154951243 1 + C T UCEC 154951242 + 154951222 154951262 41 GGCGCCCACTACCCAAGAAACCAAAGAAATGAAGCTGGCAA GGCGCCCACTACCCAAGAAACTAAAGAAATGAAGCTGGCAA < 41bp 0.488297655277615 0.731592209031612 0.38600412 0.36467674 prediction 0.463184418063225 Functional Gain - CKS1B ENSG00000173207 CDS Human protein_coding chr1:154951242 chr1:154951243 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_114540 0 0 0 1 1 CKS1B chr1:154951201 3'AG 154951201 Downstream 43bp
chr12 124229490 124229490 1 + C T UCEC 124229489 + 124229469 124229509 41 CCAAGCATTCCTGGAGTGTTCCGAGGCCCTTATCCCCTTGG CCAAGCATTCCTGGAGTGTTCTGAGGCCCTTATCCCCTTGG < 41bp 0.519160175763189 0.75074446618274 0.860257 0.6603928 prediction 0.463168580839102 Functional Gain - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124229489 chr12:124229490 stopgain 0.106 0 22 hm5C_associated_SNPs_114546 0 0 1 0 2 ATP6V0A2 chr12:124229429 3'AG 124229429 Downstream 62bp
chr12 124229490 124229490 1 + C T UCEC 124229489 + 124229469 124229509 41 CCAAGCATTCCTGGAGTGTTCCGAGGCCCTTATCCCCTTGG CCAAGCATTCCTGGAGTGTTCTGAGGCCCTTATCCCCTTGG < 41bp 0.519160175763189 0.75074446618274 0.860257 0.6603928 prediction 0.463168580839102 Functional Gain - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124229489 chr12:124229490 stopgain 0.106 0 22 hm5C_associated_SNPs_114546 0 0 1 0 2 ATP6V0A2 chr12:124229519 5'GT 124229519 Upstream 30bp
chr22 50636529 50636529 1 + C T rs562603797 50636528 + 50636508 50636548 41 GCCCAGGAAGTGCGTCCCCTCCGTGGTCGTGGGCGTCGTGG GCCCAGGAAGTGCGTCCCCTCTGTGGTCGTGGGCGTCGTGG < 41bp 0.509806559275829 0.741386376693736 0.22794232 0.08022502 prediction 0.463159634835814 Functional Gain - TRABD ENSG00000170638 CDS Human protein_coding chr22:50636528 chr22:50636529 synonymous SNV . 0 22 hm5C_associated_SNPs_114547 0 0 1 0 2 TRABD chr22:50636504 3'AG 50636504 Downstream 26bp
chr22 50636529 50636529 1 + C T rs562603797 50636528 + 50636508 50636548 41 GCCCAGGAAGTGCGTCCCCTCCGTGGTCGTGGGCGTCGTGG GCCCAGGAAGTGCGTCCCCTCTGTGGTCGTGGGCGTCGTGG < 41bp 0.509806559275829 0.741386376693736 0.22794232 0.08022502 prediction 0.463159634835814 Functional Gain - TRABD ENSG00000170638 CDS Human protein_coding chr22:50636528 chr22:50636529 synonymous SNV . 0 22 hm5C_associated_SNPs_114547 0 0 1 0 2 TRABD chr22:50636615 5'GT 50636615 Upstream 87bp
chr1 10493961 10493961 1 + A G COAD 10493958 + 10493938 10493978 41 TGCGAGGAAGTTGCATTGGACAAAGAGATGCAGTTCAGCAA TGCGAGGAAGTTGCATTGGACAAGGAGATGCAGTTCAGCAA < 41bp 0.523909956865606 0.755484624439225 0.10619122 0.20759663 prediction 0.463149335147237 Functional Gain - CENPS;CENPS-CORT ENSG00000175279;ENSG00000251503 CDS Human other chr1:10493958 chr1:10493961 synonymous SNV . 0 24 hm5C_associated_SNPs_114549 0 0 1 0 2 CENPS;CENPS-CORT chr1:10493899 3'AG 10493899 Downstream 63bp
chr1 10493961 10493961 1 + A G COAD 10493958 + 10493938 10493978 41 TGCGAGGAAGTTGCATTGGACAAAGAGATGCAGTTCAGCAA TGCGAGGAAGTTGCATTGGACAAGGAGATGCAGTTCAGCAA < 41bp 0.523909956865606 0.755484624439225 0.10619122 0.20759663 prediction 0.463149335147237 Functional Gain - CENPS;CENPS-CORT ENSG00000175279;ENSG00000251503 CDS Human other chr1:10493958 chr1:10493961 synonymous SNV . 0 24 hm5C_associated_SNPs_114549 0 0 1 0 2 CENPS;CENPS-CORT chr1:10494022 5'GT 10494022 Upstream 62bp
chr7 150749532 150749532 1 + C T BLCA 150749531 + 150749511 150749551 41 AGGGCTGGGCAGCCATCGAACCCAAGTTCCCCACCTCAGCC AGGGCTGGGCAGCCATCGAACTCAAGTTCCCCACCTCAGCC < 41bp 0.554314645552783 0.78588753545746 0.0627574 0.051099986 prediction 0.463145779809354 Functional Gain - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150749531 chr7:150749532 synonymous SNV . 0 22 hm5C_associated_SNPs_114551 0 0 0 0 2 ASIC3 chr7:150749503 3'AG 150749503 Downstream 30bp
chr7 150749532 150749532 1 + C T BLCA 150749531 + 150749511 150749551 41 AGGGCTGGGCAGCCATCGAACCCAAGTTCCCCACCTCAGCC AGGGCTGGGCAGCCATCGAACTCAAGTTCCCCACCTCAGCC < 41bp 0.554314645552783 0.78588753545746 0.0627574 0.051099986 prediction 0.463145779809354 Functional Gain - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150749531 chr7:150749532 synonymous SNV . 0 22 hm5C_associated_SNPs_114551 0 0 0 0 2 ASIC3 chr7:150749561 5'GT 150749561 Upstream 30bp
chr1 24680958 24680958 1 + A G rs573032504 24680955 + 24680935 24680975 41 GGGAGCTGGACGGCAAAATTCAGATCATCCTTAAGGAGCTG GGGAGCTGGACGGCAAAATTCAGGTCATCCTTAAGGAGCTG < 41bp 0.51047482706808 0.742042782589669 0.43561864 0.8500376 prediction 0.463135911043179 Functional Gain - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24680955 chr1:24680958 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_114552 0 0 0 0 1 GRHL3 chr1:24680864 3'AG 24680864 Downstream 95bp
chr17 74075580 74075580 1 + C T rs148270220 74075579 + 74075559 74075599 41 TTCAGGAAAGCATCCAGATCCCGAACAATGGGAGTGCGCCC TTCAGGAAAGCATCCAGATCCTGAACAATGGGAGTGCGCCC < 41bp 0.517368552439344 0.748922329350924 0.06435695 0.11296725 prediction 0.463107553823159 Functional Gain - ZACN ENSG00000186919 CDS Human protein_coding chr17:74075579 chr17:74075580 nonsynonymous SNV 0.094 1 22 hm5C_associated_SNPs_114558 0 0 0 0 2 ZACN chr17:74075520 3'AG 74075520 Downstream 61bp
chr17 74075580 74075580 1 + C T rs148270220 74075579 + 74075559 74075599 41 TTCAGGAAAGCATCCAGATCCCGAACAATGGGAGTGCGCCC TTCAGGAAAGCATCCAGATCCTGAACAATGGGAGTGCGCCC < 41bp 0.517368552439344 0.748922329350924 0.06435695 0.11296725 prediction 0.463107553823159 Functional Gain - ZACN ENSG00000186919 CDS Human protein_coding chr17:74075579 chr17:74075580 nonsynonymous SNV 0.094 1 22 hm5C_associated_SNPs_114558 0 0 0 0 2 ZACN chr17:74075644 5'GT 74075644 Upstream 65bp
chr1 26510929 26510929 1 + C T HNSC 26510928 + 26510908 26510948 41 CCCTGAGCCCCTGCCCATCCCCCCGGAACCCCCAGCCATAC CCCTGAGCCCCTGCCCATCCCTCCGGAACCCCCAGCCATAC < 41bp 0.568395209978751 0.799946555067597 0.04916203 0.0746434 prediction 0.463102690177691 Functional Gain - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26510928 chr1:26510929 synonymous SNV . 0 22 hm5C_associated_SNPs_114559 0 0 0 0 2 CNKSR1 chr1:26510892 3'AG 26510892 Downstream 38bp
chr1 26510929 26510929 1 + C T HNSC 26510928 + 26510908 26510948 41 CCCTGAGCCCCTGCCCATCCCCCCGGAACCCCCAGCCATAC CCCTGAGCCCCTGCCCATCCCTCCGGAACCCCCAGCCATAC < 41bp 0.568395209978751 0.799946555067597 0.04916203 0.0746434 prediction 0.463102690177691 Functional Gain - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26510928 chr1:26510929 synonymous SNV . 0 22 hm5C_associated_SNPs_114559 0 0 0 0 2 CNKSR1 chr1:26510998 5'GT 26510998 Upstream 70bp
chrX 135572573 135572573 1 + T G TGCT 135572571 + 135572551 135572591 41 ATTATCTCTGTCTACTATTCCTTGATTGCTAGGACCCTTTA ATTATCTCTGTCTACTATTCCTGGATTGCTAGGACCCTTTA < 41bp 0.654117946410648 0.885659287744593 0.035986543 0.29070085 prediction 0.46308268266789 Functional Gain - BRS3 ENSG00000102239 CDS Human protein_coding chrX:135572571 chrX:135572573 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_114563 0 0 0 0 1 BRS3 chrX:135572643 5'GT 135572643 Upstream 71bp
chr19 55221620 55221620 1 + A G OV 55221617 + 55221597 55221637 41 GGTCGGCCCCCAGTGACCCCCTGAGCATCCTGATCGCAGGT GGTCGGCCCCCAGTGACCCCCTGGGCATCCTGATCGCAGGT < 41bp 0.498697474874998 0.73153800100163 0.018994391 0.08843675 prediction 0.46307600200326 Functional Gain - LILRP2 ENSG00000170858 ncRNA_exonic Human transcribed_processed_pseudogene chr19:55221617 chr19:55221620 . . 0 24 hm5C_associated_SNPs_114565 0 0 0 0 1 LILRP2 chr19:55221635 5'GT 55221635 Upstream 16bp
chr2 224822353 224822353 1 + C G LUAD 224822352 + 224822332 224822372 41 AGCGCCTTCTGCGGTGCCCGCCGCCGCCCGTGCGCCGGTAG AGCGCCTTCTGCGGTGCCCGCGGCCGCCCGTGCGCCGGTAG < 41bp 0.633712328890903 0.86524906257991 0.38007358 0.8486513 prediction 0.463073467378014 Functional Gain - MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224822352 chr2:224822353 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_114566 0 0 1 0 1 MRPL44 chr2:224822368 5'GT 224822368 Upstream 16bp
chr15 38756345 38756345 1 + T G UCEC 38756343 + 38756323 38756363 41 GTTAGGCTCTCAAATAAAATCATTATGCAACTTGGAAGAAA GTTAGGCTCTCAAATAAAATCAGTATGCAACTTGGAAGAAA < 41bp 0.408939864212429 0.73153286971187 0.21975699 0.42509115 prediction 0.463065739423741 Functional Gain - FAM98B ENSG00000171262 CDS Human protein_coding chr15:38756343 chr15:38756345 nonsynonymous SNV 0.992 3 23 hm5C_associated_SNPs_114567 0 0 1 0 1 FAM98B chr15:38756378 5'GT 38756378 Upstream 34bp
chr17 38325653 38325653 1 + C T SKCM 38325652 + 38325632 38325672 41 TGCAGCCAAAGCCCTCCCCACCCCGGAGGACTCCCCAGCCA TGCAGCCAAAGCCCTCCCCACTCCGGAGGACTCCCCAGCCA < 41bp 0.603189450615028 0.834722290639864 0.07047266 0.10193172 prediction 0.463065680049672 Functional Gain - CASC3 ENSG00000108349 CDS Human protein_coding chr17:38325652 chr17:38325653 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_114568 0 0 1 0 2 CASC3 chr17:38325577 3'AG 38325577 Downstream 77bp
chr17 38325653 38325653 1 + C T SKCM 38325652 + 38325632 38325672 41 TGCAGCCAAAGCCCTCCCCACCCCGGAGGACTCCCCAGCCA TGCAGCCAAAGCCCTCCCCACTCCGGAGGACTCCCCAGCCA < 41bp 0.603189450615028 0.834722290639864 0.07047266 0.10193172 prediction 0.463065680049672 Functional Gain - CASC3 ENSG00000108349 CDS Human protein_coding chr17:38325652 chr17:38325653 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_114568 0 0 1 0 2 CASC3 chr17:38325699 5'GT 38325699 Upstream 47bp
chr17 47237930 47237930 1 + C T rs148383545 47237929 + 47237909 47237949 41 CCCTCCAGTGAGTCTGGAGTCCAGGTCCTCAGTGGCCAAGT CCCTCCAGTGAGTCTGGAGTCTAGGTCCTCAGTGGCCAAGT < 41bp 0.499525428971434 0.731530694660808 0.23206705 0.20248505 prediction 0.463061389321615 Functional Gain - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47237929 chr17:47237930 synonymous SNV . 0 22 hm5C_associated_SNPs_114569 0 0 0 0 2 B4GALNT2 chr17:47237917 3'AG 47237917 Downstream 14bp
chr17 47237930 47237930 1 + C T rs148383545 47237929 + 47237909 47237949 41 CCCTCCAGTGAGTCTGGAGTCCAGGTCCTCAGTGGCCAAGT CCCTCCAGTGAGTCTGGAGTCTAGGTCCTCAGTGGCCAAGT < 41bp 0.499525428971434 0.731530694660808 0.23206705 0.20248505 prediction 0.463061389321615 Functional Gain - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47237929 chr17:47237930 synonymous SNV . 0 22 hm5C_associated_SNPs_114569 0 0 0 0 2 B4GALNT2 chr17:47238003 5'GT 47238003 Upstream 74bp
chr1 159803114 159803114 1 + A G rs114443420 159803111 + 159803091 159803131 41 TGGTGCCTGTCTCGCTGCTCCTGATGCTGGTTACTCTCTTC TGGTGCCTGTCTCGCTGCTCCTGGTGCTGGTTACTCTCTTC < 41bp 0.552482609816632 0.784011285854802 0.20008546 0.40946507 prediction 0.46305735207634 Functional Gain - SLAMF8 ENSG00000158714 CDS Human protein_coding chr1:159803111 chr1:159803114 nonsynonymous SNV 0.528 0 24 hm5C_associated_SNPs_114570 0 0 0 0 2 SLAMF8 chr1:159803052 3'AG 159803052 Downstream 63bp
chr1 159803114 159803114 1 + A G rs114443420 159803111 + 159803091 159803131 41 TGGTGCCTGTCTCGCTGCTCCTGATGCTGGTTACTCTCTTC TGGTGCCTGTCTCGCTGCTCCTGGTGCTGGTTACTCTCTTC < 41bp 0.552482609816632 0.784011285854802 0.20008546 0.40946507 prediction 0.46305735207634 Functional Gain - SLAMF8 ENSG00000158714 CDS Human protein_coding chr1:159803111 chr1:159803114 nonsynonymous SNV 0.528 0 24 hm5C_associated_SNPs_114570 0 0 0 0 2 SLAMF8 chr1:159803159 5'GT 159803159 Upstream 46bp
chr9 92220055 92220055 1 + C A LUSC 92220054 + 92220034 92220074 41 ACTATGACTCTGGAAGAAGTCCGCGGCCAGGACACAGTTCC ACTATGACTCTGGAAGAAGTCAGCGGCCAGGACACAGTTCC < 41bp 0.560870909312041 0.792393838963533 0.155337 0.33485705 prediction 0.463045859302984 Functional Gain - GADD45G ENSG00000130222 CDS Human protein_coding chr9:92220054 chr9:92220055 nonsynonymous SNV 0.970 0 22 hm5C_associated_SNPs_114572 0 0 0 0 1 GADD45G chr9:92220089 5'GT 92220089 Upstream 35bp
chrX 54836447 54836447 1 + C T STAD 54836446 + 54836426 54836466 41 CCAAGAAACAGAATGCTGACCCGCAGGCTGTGACAATGCCT CCAAGAAACAGAATGCTGACCTGCAGGCTGTGACAATGCCT < 41bp 0.478585915645424 0.731521391467373 0.024235606 0.0868018 prediction 0.463042782934746 Functional Gain - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54836446 chrX:54836447 nonsynonymous SNV 0.323 0 22 hm5C_associated_SNPs_114573 0 0 1 0 1 MAGED2 chrX:54836356 3'AG 54836356 Downstream 92bp
chr1 43803529 43803529 1 + T C UCEC 43803527 + 43803507 43803547 41 AGTGGCGGAGAAGATGCCCTCCTGGGCCCTCTTCATGGTCA AGTGGCGGAGAAGATGCCCTCCCGGGCCCTCTTCATGGTCA < 41bp 0.514729948074585 0.746250803085076 0.10355714 0.161674 prediction 0.463041710020982 Functional Gain - MPL ENSG00000117400 CDS Human protein_coding chr1:43803527 chr1:43803529 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_114574 0 0 0 0 1 MPL chr1:43803598 5'GT 43803598 Upstream 70bp
chr21 47660787 47660787 1 + A G LIHC 47660784 + 47660764 47660804 41 AAACACTGCGCCAAGAGCTCCTCAGCAGAAGCTCCTCGCAT AAACACTGCGCCAAGAGCTCCTCGGCAGAAGCTCCTCGCAT < 41bp 0.540484176723374 0.77200241701779 0.055668473 0.0616875 prediction 0.463036480588832 Functional Gain - MCM3AP ENSG00000160294 CDS Human protein_coding chr21:47660784 chr21:47660787 synonymous SNV . 0 24 hm5C_associated_SNPs_114575 0 0 1 2 1 MCM3AP chr21:47660748 3'AG 47660748 Downstream 40bp
chr15 42139859 42139859 1 + C A DLBC 42139855 + 42139835 42139875 41 CTCTCTCCACAGGGGTCCGGCGGACACCCGAGGAGGCGGCA CTCTCTCCACAGGGGTCCGGCGGAAACCCGAGGAGGCGGCA < 41bp 0.334542380821423 0.73151778014352 0.52114683 0.7258336 prediction 0.46303556028704 Functional Gain - JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42139855 chr15:42139859 nonsynonymous SNV 0.022 1 25 hm5C_associated_SNPs_114576 0 0 0 0 1 JMJD7-PLA2G4B;PLA2G4B chr15:42139847 3'AG 42139847 Downstream 13bp
chr12 53666549 53666549 1 + C A UCEC 53666545 + 53666525 53666565 41 GCCTACAGCTTCTATAGTCACAAGCTCTATGCCGAGGCCTG GCCTACAGCTTCTATAGTCACAAGATCTATGCCGAGGCCTG < 41bp 0.328830671006186 0.731513592686127 0.24598098 0.7331991 prediction 0.463027185372254 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53666545 chr12:53666549 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_114579 0 0 1 0 2 ESPL1 chr12:53666505 3'AG 53666505 Downstream 45bp
chr12 53666549 53666549 1 + C A UCEC 53666545 + 53666525 53666565 41 GCCTACAGCTTCTATAGTCACAAGCTCTATGCCGAGGCCTG GCCTACAGCTTCTATAGTCACAAGATCTATGCCGAGGCCTG < 41bp 0.328830671006186 0.731513592686127 0.24598098 0.7331991 prediction 0.463027185372254 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53666545 chr12:53666549 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_114579 0 0 1 0 2 ESPL1 chr12:53666641 5'GT 53666641 Upstream 93bp
chr17 30696705 30696705 1 + C A UCEC 30696701 + 30696681 30696721 41 GGCAGGGACCGCCAATGGTGCCCCCTTACCAGGGTGGGCCT GGCAGGGACCGCCAATGGTGCCCCATTACCAGGGTGGGCCT < 41bp 0.307410019714192 0.731510654159453 0.032099307 0.017487288 prediction 0.463021308318906 Functional Gain - ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30696701 chr17:30696705 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_114580 0 0 1 0 3 ZNF207 chr17:30696618 3'AG 30696618 Downstream 88bp
chr17 30696705 30696705 1 + C A UCEC 30696701 + 30696681 30696721 41 GGCAGGGACCGCCAATGGTGCCCCCTTACCAGGGTGGGCCT GGCAGGGACCGCCAATGGTGCCCCATTACCAGGGTGGGCCT < 41bp 0.307410019714192 0.731510654159453 0.032099307 0.017487288 prediction 0.463021308318906 Functional Gain - ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30696701 chr17:30696705 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_114580 0 0 1 0 3 ZNF207 chr17:30696764 5'GT 30696764 Upstream 60bp
chr17 30696705 30696705 1 + C A UCEC 30696701 + 30696681 30696721 41 GGCAGGGACCGCCAATGGTGCCCCCTTACCAGGGTGGGCCT GGCAGGGACCGCCAATGGTGCCCCATTACCAGGGTGGGCCT < 41bp 0.307410019714192 0.731510654159453 0.032099307 0.017487288 prediction 0.463021308318906 Functional Gain - ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30696701 chr17:30696705 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_114580 0 0 1 0 3 ZNF207 chr17:30696801 5'GT 30696801 Upstream 97bp
chr1 22923840 22923840 1 + C A OV 22923839 + 22923819 22923859 41 TTCCTGCCTCTGCATCACCCCCCGGGAAAGCTCCCAGAGCC TTCCTGCCTCTGCATCACCCCACGGGAAAGCTCCCAGAGCC < 41bp 0.467449424218348 0.731510317984527 0.20176214 0.31554925 prediction 0.463020635969054 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22923839 chr1:22923840 nonsynonymous SNV 0.926 0 22 hm5C_associated_SNPs_114581 0 0 0 0 1 EPHA8 chr1:22923805 3'AG 22923805 Downstream 36bp
chr19 2987898 2987898 1 + C T rs45508491 2987897 + 2987877 2987917 41 CCTCTTGTCTCCCCACTAGCCCCCAGGCCACCTGAGGCCTC CCTCTTGTCTCCCCACTAGCCTCCAGGCCACCTGAGGCCTC < 41bp 0.566920438971873 0.798430574740629 0.15177757 0.9342504 prediction 0.46302027153751 Functional Gain - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2987897 chr19:2987898 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_114582 0 0 0 0 2 TLE6 chr19:2987896 3'AG 2987896 Downstream 3bp
chr19 2987898 2987898 1 + C T rs45508491 2987897 + 2987877 2987917 41 CCTCTTGTCTCCCCACTAGCCCCCAGGCCACCTGAGGCCTC CCTCTTGTCTCCCCACTAGCCTCCAGGCCACCTGAGGCCTC < 41bp 0.566920438971873 0.798430574740629 0.15177757 0.9342504 prediction 0.46302027153751 Functional Gain - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2987897 chr19:2987898 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_114582 0 0 0 0 2 TLE6 chr19:2987972 5'GT 2987972 Upstream 75bp
chr16 847080 847080 1 + C T SKCM 847079 + 847059 847099 41 GCACATCATGAGGCGAGCGGCCCGGGAGGAACAGGTGTGGA GCACATCATGAGGCGAGCGGCTCGGGAGGAACAGGTGTGGA < 41bp 0.530272947178946 0.761779420753893 0.29189387 0.27348804 prediction 0.463012947149893 Functional Gain - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:847079 chr16:847080 synonymous SNV . 0 22 hm5C_associated_SNPs_114584 0 0 1 0 1 CHTF18 chr16:847092 5'GT 847092 Upstream 13bp
chr1 167095086 167095086 1 + C T SKCM 167095085 + 167095065 167095105 41 GCAGTGCTGGTGGTCGCCTACCTGATGATCTTCCACAACAT GCAGTGCTGGTGGTCGCCTACTTGATGATCTTCCACAACAT < 41bp 0.479668644625724 0.731503095420694 0.29579145 0.1363678 prediction 0.463006190841389 Functional Gain - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167095085 chr1:167095086 synonymous SNV . 0 22 hm5C_associated_SNPs_114586 0 0 0 0 1 DUSP27 chr1:167095024 3'AG 167095024 Downstream 63bp
chr3 107435518 107435518 1 + C T STAD 107435517 + 107435497 107435537 41 AAACTGAAGATGATGAATCACCAGAGCAGCGAGCCCGGAGA AAACTGAAGATGATGAATCACTAGAGCAGCGAGCCCGGAGA < 41bp 0.564107189402676 0.795603939444017 0.176135 0.102994174 prediction 0.462993500082682 Functional Gain - BBX ENSG00000114439 CDS Human protein_coding chr3:107435517 chr3:107435518 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_114587 0 0 1 0 1 BBX chr3:107435454 3'AG 107435454 Downstream 65bp
chr14 100795362 100795362 1 + C G rs142537072 100795361 + 100795341 100795381 41 CCTCTGCGAGTGGCTCAGCCCCGCTGGCCACAGCCGGCCAG CCTCTGCGAGTGGCTCAGCCCGGCTGGCCACAGCCGGCCAG < 41bp 0.646478658416862 0.877973435695561 0.2546181 0.3635255 prediction 0.462989554557398 Functional Gain - SLC25A47 ENSG00000140107 CDS Human protein_coding chr14:100795361 chr14:100795362 synonymous SNV . 0 22 hm5C_associated_SNPs_114588 0 0 0 0 1 SLC25A47 chr14:100795381 5'GT 100795381 Upstream 20bp
chr18 29121270 29121270 1 + A G LGG 29121267 + 29121247 29121287 41 GAATAATGAAGGAGCACCACCTGAAGACAAGGTCAGTGGAT GAATAATGAAGGAGCACCACCTGGAGACAAGGTCAGTGGAT < 41bp 0.528176143513015 0.759667593620516 0.2665903 0.43038422 prediction 0.462982900215002 Functional Gain - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29121267 chr18:29121270 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_114590 0 0 1 0 1 DSG2 chr18:29121277 5'GT 29121277 Upstream 8bp
chr4 52752797 52752797 1 + C T LUAD 52752796 + 52752776 52752816 41 GTGAAGACATTGGTGTTGAACCAGAAAACGTGAGTCAAACT GTGAAGACATTGGTGTTGAACTAGAAAACGTGAGTCAAACT < 41bp 0.525714030261105 0.757201313033066 0.20834261 0.07167509 prediction 0.462974565543922 Functional Gain - DCUN1D4 ENSG00000109184 CDS Human protein_coding chr4:52752796 chr4:52752797 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_114592 0 0 1 0 2 DCUN1D4 chr4:52752734 3'AG 52752734 Downstream 64bp
chr4 52752797 52752797 1 + C T LUAD 52752796 + 52752776 52752816 41 GTGAAGACATTGGTGTTGAACCAGAAAACGTGAGTCAAACT GTGAAGACATTGGTGTTGAACTAGAAAACGTGAGTCAAACT < 41bp 0.525714030261105 0.757201313033066 0.20834261 0.07167509 prediction 0.462974565543922 Functional Gain - DCUN1D4 ENSG00000109184 CDS Human protein_coding chr4:52752796 chr4:52752797 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_114592 0 0 1 0 2 DCUN1D4 chr4:52752804 5'GT 52752804 Upstream 8bp
chr1 25633115 25633115 1 + C A rs200415166 25633114 + 25633094 25633134 41 GTAACCGAGTGCTGGGGATTCCCCACAGCTCCATCATGGGC GTAACCGAGTGCTGGGGATTCACCACAGCTCCATCATGGGC < 41bp 0.539624681090514 0.771111128234891 0.18931031 0.37196457 prediction 0.462972894288755 Functional Gain - RHD ENSG00000187010 CDS Human protein_coding chr1:25633114 chr1:25633115 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_114593 0 0 1 0 1 RHD chr1:25633087 3'AG 25633087 Downstream 29bp
chr20 3782665 3782665 1 + C T COAD 3782664 + 3782644 3782684 41 TCCTCAAGAGGCTGGAGCGGCCCCAGGACAGGGACACGCCC TCCTCAAGAGGCTGGAGCGGCTCCAGGACAGGGACACGCCC < 41bp 0.595708795462192 0.827194308429423 0.21365738 0.89752614 prediction 0.462971025934461 Functional Gain - CDC25B ENSG00000101224 CDS Human protein_coding chr20:3782664 chr20:3782665 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_114594 0 0 1 0 2 CDC25B chr20:3782571 3'AG 3782571 Downstream 95bp
chr20 3782665 3782665 1 + C T COAD 3782664 + 3782644 3782684 41 TCCTCAAGAGGCTGGAGCGGCCCCAGGACAGGGACACGCCC TCCTCAAGAGGCTGGAGCGGCTCCAGGACAGGGACACGCCC < 41bp 0.595708795462192 0.827194308429423 0.21365738 0.89752614 prediction 0.462971025934461 Functional Gain - CDC25B ENSG00000101224 CDS Human protein_coding chr20:3782664 chr20:3782665 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_114594 0 0 1 0 2 CDC25B chr20:3782747 5'GT 3782747 Upstream 83bp
chr12 72278745 72278745 1 + T C UCEC 72278743 + 72278723 72278763 41 TTCTCCCTGCTCTACACTTTCATCAAGGAGATAGCAAACTA TTCTCCCTGCTCTACACTTTCACCAAGGAGATAGCAAACTA < 41bp 0.431411566706871 0.731485043929572 0.04935068 0.123288184 prediction 0.462970087859144 Functional Gain - TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72278743 chr12:72278745 synonymous SNV . 0 23 hm5C_associated_SNPs_114595 0 0 1 0 1 TBC1D15 chr12:72278801 5'GT 72278801 Upstream 57bp
chr1 46714224 46714224 1 + C A KIRC 46714223 + 46714203 46714243 41 GCCAGCTGGCCAAGAGAAAACCTGAAGGCAGGTCCTGTGAT GCCAGCTGGCCAAGAGAAAACATGAAGGCAGGTCCTGTGAT < 41bp 0.584016982135011 0.815501861181863 0.16649085 0.2455293 prediction 0.462969758093702 Functional Gain - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46714223 chr1:46714224 nonsynonymous SNV 0.178 1 22 hm5C_associated_SNPs_114596 0 0 1 0 2 RAD54L chr1:46714184 3'AG 46714184 Downstream 41bp
chr1 46714224 46714224 1 + C A KIRC 46714223 + 46714203 46714243 41 GCCAGCTGGCCAAGAGAAAACCTGAAGGCAGGTCCTGTGAT GCCAGCTGGCCAAGAGAAAACATGAAGGCAGGTCCTGTGAT < 41bp 0.584016982135011 0.815501861181863 0.16649085 0.2455293 prediction 0.462969758093702 Functional Gain - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46714223 chr1:46714224 nonsynonymous SNV 0.178 1 22 hm5C_associated_SNPs_114596 0 0 1 0 2 RAD54L chr1:46714270 5'GT 46714270 Upstream 47bp
chr15 77759508 77759508 1 + C A KIRP 77759504 + 77759484 77759524 41 ACCTCTTCGAGACAGCAATGCACCCAAATCCCCCCTTACAG ACCTCTTCGAGACAGCAATGCACCAAAATCCCCCCTTACAG < 41bp 0.293135190012359 0.731475686158249 0.005794853 0.015551597 prediction 0.462951372316498 Functional Gain - HMG20A ENSG00000140382 CDS Human protein_coding chr15:77759504 chr15:77759508 synonymous SNV . 0 25 hm5C_associated_SNPs_114599 0 0 1 0 1 HMG20A chr15:77759437 3'AG 77759437 Downstream 72bp
chr20 58330261 58330261 1 + C A LUAD 58330260 + 58330240 58330280 41 CTGAAAGCAAAACTTGCAACCCCGATGGAGGACCCCGATCT CTGAAAGCAAAACTTGCAACCACGATGGAGGACCCCGATCT < 41bp 0.558450520707617 0.78992289041023 0.09559825 0.22706342 prediction 0.462944739405226 Functional Gain - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58330260 chr20:58330261 nonsynonymous SNV 0.008 1 22 hm5C_associated_SNPs_114600 0 0 0 0 1 PHACTR3 chr20:58330237 3'AG 58330237 Downstream 25bp
chr19 17894972 17894972 1 + C T UCEC 17894971 + 17894951 17894991 41 GCTCAACATGGCAGCTCTGACCGAAGCCCTGCAGCGCCAGG GCTCAACATGGCAGCTCTGACTGAAGCCCTGCAGCGCCAGG < 41bp 0.56696356813747 0.798424240432152 0.70015275 0.15049699 prediction 0.462921344589363 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17894971 chr19:17894972 synonymous SNV . 0 22 hm5C_associated_SNPs_114602 0 0 0 0 2 FCHO1 chr19:17894912 3'AG 17894912 Downstream 61bp
chr19 17894972 17894972 1 + C T UCEC 17894971 + 17894951 17894991 41 GCTCAACATGGCAGCTCTGACCGAAGCCCTGCAGCGCCAGG GCTCAACATGGCAGCTCTGACTGAAGCCCTGCAGCGCCAGG < 41bp 0.56696356813747 0.798424240432152 0.70015275 0.15049699 prediction 0.462921344589363 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17894971 chr19:17894972 synonymous SNV . 0 22 hm5C_associated_SNPs_114602 0 0 0 0 2 FCHO1 chr19:17895044 5'GT 17895044 Upstream 73bp
chr17 40837368 40837368 1 + C T BLCA 40837367 + 40837347 40837387 41 GGACGGTCTTCTGCTGCACGCCGAGGGCGCCCAGGGCGACT GGACGGTCTTCTGCTGCACGCTGAGGGCGCCCAGGGCGACT < 41bp 0.518167664384735 0.749625977402476 0.49561793 0.30109087 prediction 0.462916626035482 Functional Gain - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40837367 chr17:40837368 synonymous SNV . 0 22 hm5C_associated_SNPs_114603 0 0 0 0 1 CNTNAP1 chr17:40837438 5'GT 40837438 Upstream 71bp
chr2 65217234 65217234 1 + C A UCEC 65217230 + 65217210 65217250 41 GCGCAGACCCTTCAGTCCAGCGACCTGGGGCTGGAGGACTC GCGCAGACCCTTCAGTCCAGCGACATGGGGCTGGAGGACTC < 41bp 0.343518919981862 0.731457866958431 0.68591547 0.6512232 prediction 0.462915733916863 Functional Gain - SLC1A4 ENSG00000115902 CDS Human protein_coding chr2:65217230 chr2:65217234 nonsynonymous SNV 0.952 0 25 hm5C_associated_SNPs_114604 0 0 1 0 1 SLC1A4 chr2:65217304 5'GT 65217304 Upstream 71bp
chr17 21215489 21215489 1 + C T SKCM 21215488 + 21215468 21215508 41 CCTGCGGTTCCCTTACGAGTCCTGGGGGACCCCGTTCCAGC CCTGCGGTTCCCTTACGAGTCTTGGGGGACCCCGTTCCAGC < 41bp 0.477331854763436 0.731455717087855 0.28901514 0.27835593 prediction 0.46291143417571 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21215488 chr17:21215489 synonymous SNV . 0 22 hm5C_associated_SNPs_114605 0 0 1 0 1 MAP2K3 chr17:21215454 3'AG 21215454 Downstream 36bp
chr16 15122812 15122812 1 + C G rs112323280 15122808 + 15122788 15122828 41 CGGGAGAGGCACTCGTGTGACGCGCTGAATCGCTGGGTGAG CGGGAGAGGCACTCGTGTGACGCGGTGAATCGCTGGGTGAG < 41bp 0.620817692725549 0.852264683805611 0.15941712 0.6235385 prediction 0.462893982160125 Functional Gain - PDXDC1 ENSG00000179889 CDS Human protein_coding chr16:15122808 chr16:15122812 nonsynonymous SNV 0.279 0 25 hm5C_associated_SNPs_114610 0 0 1 0 2 PDXDC1 chr16:15122735 3'AG 15122735 Downstream 78bp
chr16 15122812 15122812 1 + C G rs112323280 15122808 + 15122788 15122828 41 CGGGAGAGGCACTCGTGTGACGCGCTGAATCGCTGGGTGAG CGGGAGAGGCACTCGTGTGACGCGGTGAATCGCTGGGTGAG < 41bp 0.620817692725549 0.852264683805611 0.15941712 0.6235385 prediction 0.462893982160125 Functional Gain - PDXDC1 ENSG00000179889 CDS Human protein_coding chr16:15122808 chr16:15122812 nonsynonymous SNV 0.279 0 25 hm5C_associated_SNPs_114610 0 0 1 0 2 PDXDC1 chr16:15122823 5'GT 15122823 Upstream 12bp
chr8 21890671 21890671 1 + C T LUAD 21890670 + 21890650 21890690 41 GTAGGAGTGCAGCTTTCTCCCCCAGTTACTTTCCAGCTCCG GTAGGAGTGCAGCTTTCTCCCTCAGTTACTTTCCAGCTCCG < 41bp 0.489158685524735 0.73144421173271 0.12605938 0.0691973 prediction 0.462888423465419 Functional Gain - NPM2 ENSG00000158806 CDS Human protein_coding chr8:21890670 chr8:21890671 nonsynonymous SNV 0.977 2 22 hm5C_associated_SNPs_114612 0 0 1 0 2 NPM2 chr8:21890641 3'AG 21890641 Downstream 31bp
chr8 21890671 21890671 1 + C T LUAD 21890670 + 21890650 21890690 41 GTAGGAGTGCAGCTTTCTCCCCCAGTTACTTTCCAGCTCCG GTAGGAGTGCAGCTTTCTCCCTCAGTTACTTTCCAGCTCCG < 41bp 0.489158685524735 0.73144421173271 0.12605938 0.0691973 prediction 0.462888423465419 Functional Gain - NPM2 ENSG00000158806 CDS Human protein_coding chr8:21890670 chr8:21890671 nonsynonymous SNV 0.977 2 22 hm5C_associated_SNPs_114612 0 0 1 0 2 NPM2 chr8:21890734 5'GT 21890734 Upstream 64bp
chr9 96421820 96421820 1 + C T GBM 96421819 + 96421799 96421839 41 GCAGAGCATGAGGACGAGCTCCCGGAGCACTTCAAACCTTC GCAGAGCATGAGGACGAGCTCTCGGAGCACTTCAAACCTTC < 41bp 0.580760267788126 0.812193185467281 0.4138394 0.38158047 prediction 0.462865835358309 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96421819 chr9:96421820 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_114614 0 0 1 0 2 PHF2 chr9:96421793 3'AG 96421793 Downstream 28bp
chr9 96421820 96421820 1 + C T GBM 96421819 + 96421799 96421839 41 GCAGAGCATGAGGACGAGCTCCCGGAGCACTTCAAACCTTC GCAGAGCATGAGGACGAGCTCTCGGAGCACTTCAAACCTTC < 41bp 0.580760267788126 0.812193185467281 0.4138394 0.38158047 prediction 0.462865835358309 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96421819 chr9:96421820 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_114614 0 0 1 0 2 PHF2 chr9:96421882 5'GT 96421882 Upstream 63bp
chr15 65856658 65856658 1 + C T SKCM 65856657 + 65856637 65856677 41 CAATTGGAGTCACTACGTCACCGGTGCTGCCTTCTCTGATC CAATTGGAGTCACTACGTCACTGGTGCTGCCTTCTCTGATC < 41bp 0.523653878770662 0.755083986424351 0.104685575 0.31571063 prediction 0.462860215307378 Functional Gain - HACD3 ENSG00000074696 CDS Human protein_coding chr15:65856657 chr15:65856658 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_114615 0 0 1 2 1 HACD3 chr15:65856680 5'GT 65856680 Upstream 23bp
chr15 43692279 43692279 1 + C T SKCM 43692278 + 43692258 43692298 41 AAGTACTTACTGAGTGTGCGCCGGGTGCAAGCTGAGCTGCA AAGTACTTACTGAGTGTGCGCTGGGTGCAAGCTGAGCTGCA < 41bp 0.512503737289555 0.743930383219619 0.90701604 0.4601186 prediction 0.462853291860128 Functional Gain - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43692278 chr15:43692279 nonsynonymous SNV 0.755 4 22 hm5C_associated_SNPs_114617 0 0 1 0 1 TUBGCP4 chr15:43692242 3'AG 43692242 Downstream 38bp
chr20 62655955 62655955 1 + A G BRCA 62655952 + 62655932 62655972 41 GAGGGCTGTGGCCCACTGCCCCAAAGCAGAGGTGCTGTGGC GAGGGCTGTGGCCCACTGCCCCAGAGCAGAGGTGCTGTGGC < 41bp 0.483085603526523 0.731414845536901 0.09524259 0.33768404 prediction 0.462829691073802 Functional Gain - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62655952 chr20:62655955 nonsynonymous SNV 0.974 1 24 hm5C_associated_SNPs_114622 0 0 1 0 2 PRPF6 chr20:62655908 3'AG 62655908 Downstream 48bp
chr20 62655955 62655955 1 + A G BRCA 62655952 + 62655932 62655972 41 GAGGGCTGTGGCCCACTGCCCCAAAGCAGAGGTGCTGTGGC GAGGGCTGTGGCCCACTGCCCCAGAGCAGAGGTGCTGTGGC < 41bp 0.483085603526523 0.731414845536901 0.09524259 0.33768404 prediction 0.462829691073802 Functional Gain - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62655952 chr20:62655955 nonsynonymous SNV 0.974 1 24 hm5C_associated_SNPs_114622 0 0 1 0 2 PRPF6 chr20:62656046 5'GT 62656046 Upstream 92bp
chr9 108467964 108467964 1 + C G BLCA 108467960 + 108467940 108467980 41 TTTGGTGGAGGAATTTTATCCTGTCTACTGCTTGCAGAGCC TTTGGTGGAGGAATTTTATCCTGTGTACTGCTTGCAGAGCC < 41bp 0.453080620795213 0.731412633988467 0.26625812 0.35834157 prediction 0.462825267976934 Functional Gain - TMEM38B ENSG00000095209 CDS Human protein_coding chr9:108467960 chr9:108467964 nonsynonymous SNV 0.928 0 25 hm5C_associated_SNPs_114623 0 0 1 0 2 TMEM38B chr9:108467878 3'AG 108467878 Downstream 87bp
chr9 108467964 108467964 1 + C G BLCA 108467960 + 108467940 108467980 41 TTTGGTGGAGGAATTTTATCCTGTCTACTGCTTGCAGAGCC TTTGGTGGAGGAATTTTATCCTGTGTACTGCTTGCAGAGCC < 41bp 0.453080620795213 0.731412633988467 0.26625812 0.35834157 prediction 0.462825267976934 Functional Gain - TMEM38B ENSG00000095209 CDS Human protein_coding chr9:108467960 chr9:108467964 nonsynonymous SNV 0.928 0 25 hm5C_associated_SNPs_114623 0 0 1 0 2 TMEM38B chr9:108468034 5'GT 108468034 Upstream 71bp
chr4 89385121 89385121 1 + A G UCEC 89385118 + 89385098 89385138 41 GCTTGTTGGGTATAGAGTGACTCAGATAGCATGTGGAAGGT GCTTGTTGGGTATAGAGTGACTCGGATAGCATGTGGAAGGT < 41bp 0.503043977928508 0.734455850129652 0.22413635 0.337896 prediction 0.462823744402286 Functional Gain - HERC5 ENSG00000138646 CDS Human protein_coding chr4:89385118 chr4:89385121 nonsynonymous SNV 0.992 5 24 hm5C_associated_SNPs_114625 0 0 0 0 1 HERC5 chr4:89385136 5'GT 89385136 Upstream 16bp
chr12 113873352 113873352 1 + A G LUAD 113873349 + 113873329 113873369 41 CGGCAAGCTGGTCACACTTCCAGACATCACCAGGTGGGTAA CGGCAAGCTGGTCACACTTCCAGGCATCACCAGGTGGGTAA < 41bp 0.543699169953429 0.775102814278734 0.42847088 0.8310206 prediction 0.462807288650611 Functional Gain - SDSL ENSG00000139410 CDS Human protein_coding chr12:113873349 chr12:113873352 nonsynonymous SNV 0.141 1 24 hm5C_associated_SNPs_114628 0 0 0 0 1 SDSL chr12:113873361 5'GT 113873361 Upstream 10bp
chr6 44122487 44122487 1 + C T SKCM 44122486 + 44122466 44122506 41 ACGGGGATGGGGATGGGGCTCCTGGGAGCTCAGGGGATGAG ACGGGGATGGGGATGGGGCTCTTGGGAGCTCAGGGGATGAG < 41bp 0.493743644086691 0.731391131705604 0.59080315 0.37878639 prediction 0.462782263411208 Functional Gain - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44122486 chr6:44122487 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_114635 0 0 1 0 1 TMEM63B chr6:44122429 3'AG 44122429 Downstream 59bp
chr1 15430618 15430618 1 + C T SKCM 15430617 + 15430597 15430637 41 ATGGCCACTGCCCTGGGCATCCCCAGTGGGAAGCACATCCT ATGGCCACTGCCCTGGGCATCTCCAGTGGGAAGCACATCCT < 41bp 0.462636085504514 0.731381162436389 0.08929595 0.9449912 prediction 0.462762324872778 Functional Gain - KAZN ENSG00000189337 CDS Human protein_coding chr1:15430617 chr1:15430618 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_114638 0 0 0 0 2 KAZN chr1:15430519 3'AG 15430519 Downstream 100bp
chr1 15430618 15430618 1 + C T SKCM 15430617 + 15430597 15430637 41 ATGGCCACTGCCCTGGGCATCCCCAGTGGGAAGCACATCCT ATGGCCACTGCCCTGGGCATCTCCAGTGGGAAGCACATCCT < 41bp 0.462636085504514 0.731381162436389 0.08929595 0.9449912 prediction 0.462762324872778 Functional Gain - KAZN ENSG00000189337 CDS Human protein_coding chr1:15430617 chr1:15430618 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_114638 0 0 0 0 2 KAZN chr1:15430685 5'GT 15430685 Upstream 68bp
chr22 40802592 40802592 1 + C T UCEC 40802591 + 40802571 40802611 41 GTGGCCGTGGAGACTCAGCGCCGCAAGCACCTGGCCTATCT GTGGCCGTGGAGACTCAGCGCTGCAAGCACCTGGCCTATCT < 41bp 0.565153085375853 0.796510531456844 0.31648988 0.1830656 prediction 0.462714892161983 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40802591 chr22:40802592 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_114643 0 0 1 0 1 SGSM3 chr22:40802666 5'GT 40802666 Upstream 75bp
chr11 55655666 55655666 1 + C T SKCM 55655665 + 55655645 55655685 41 CAAAGCCAGAATGGAACATTCCAGGGAGCTTTTAAGAGGAA CAAAGCCAGAATGGAACATTCTAGGGAGCTTTTAAGAGGAA < 41bp 0.519896038219266 0.751251839016383 0.7104561 0.2706901 prediction 0.462711601594235 Functional Gain - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55655665 chr11:55655666 synonymous SNV . 0 22 hm5C_associated_SNPs_114644 0 0 0 0 1 TRIM51 chr11:55655738 5'GT 55655738 Upstream 73bp
chr9 135863589 135863589 1 + C T KIRC 135863588 + 135863568 135863608 41 GTCGTTATCTCCACAGAGGGCCCCATTGTGCTGTCCCGACC GTCGTTATCTCCACAGAGGGCTCCATTGTGCTGTCCCGACC < 41bp 0.474994245530842 0.731349706278487 0.0144687 0.3681643 prediction 0.462699412556974 Functional Gain - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135863588 chr9:135863589 nonsynonymous SNV 0.007 0 22 hm5C_associated_SNPs_114646 0 0 0 0 1 GFI1B chr9:135863584 3'AG 135863584 Downstream 6bp
chr14 20924986 20924986 1 + C T HNSC 20924985 + 20924965 20925005 41 AGTGGCGTGGGCCTGCTTTCCCGCCAGTGCCCACTCAAAGT AGTGGCGTGGGCCTGCTTTCCTGCCAGTGCCCACTCAAAGT < 41bp 0.478241258026613 0.73133445569839 0.10186681 0.15440086 prediction 0.46266891139678 Functional Gain - APEX1 ENSG00000100823 CDS Human protein_coding chr14:20924985 chr14:20924986 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_114651 0 0 1 0 1 APEX1 chr14:20925019 5'GT 20925019 Upstream 34bp
chr11 10794110 10794110 1 + C T HNSC 10794109 + 10794089 10794129 41 CAGGCCCAGTACCATGTGGCCCGGGCACGCAAACAAGATGA CAGGCCCAGTACCATGTGGCCTGGGCACGCAAACAAGATGA < 41bp 0.541439826853584 0.77276947141247 0.40424174 0.16365725 prediction 0.46265928911777 Functional Gain - CTR9 ENSG00000198730 CDS Human protein_coding chr11:10794109 chr11:10794110 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_114652 0 0 1 0 2 CTR9 chr11:10794067 3'AG 10794067 Downstream 44bp
chr11 10794110 10794110 1 + C T HNSC 10794109 + 10794089 10794129 41 CAGGCCCAGTACCATGTGGCCCGGGCACGCAAACAAGATGA CAGGCCCAGTACCATGTGGCCTGGGCACGCAAACAAGATGA < 41bp 0.541439826853584 0.77276947141247 0.40424174 0.16365725 prediction 0.46265928911777 Functional Gain - CTR9 ENSG00000198730 CDS Human protein_coding chr11:10794109 chr11:10794110 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_114652 0 0 1 0 2 CTR9 chr11:10794202 5'GT 10794202 Upstream 93bp
chr2 179320767 179320767 1 + T C STAD 179320765 + 179320745 179320785 41 ACTTTGACCACAGCTTGATACGTCAGTCAAGGAGCAGCAGA ACTTTGACCACAGCTTGATACGCCAGTCAAGGAGCAGCAGA < 41bp 0.437030196240817 0.731329481191592 0.048158824 0.039609373 prediction 0.462658962383183 Functional Gain - DFNB59 ENSG00000204311 CDS Human protein_coding chr2:179320765 chr2:179320767 synonymous SNV . 0 23 hm5C_associated_SNPs_114653 0 0 0 0 1 DFNB59 chr2:179320737 3'AG 179320737 Downstream 31bp
chr1 1957140 1957140 1 + C T BLCA 1957139 + 1957119 1957159 41 ACGGTGGAGAACAAGCTCATCCGGCTGCAGCCCGACGGCGT ACGGTGGAGAACAAGCTCATCTGGCTGCAGCCCGACGGCGT < 41bp 0.494068025040638 0.731329160340408 0.4540263 0.22931984 prediction 0.462658320680816 Functional Gain - GABRD ENSG00000187730 CDS Human protein_coding chr1:1957139 chr1:1957140 nonsynonymous SNV 0.991 4 22 hm5C_associated_SNPs_114654 0 0 0 0 1 GABRD chr1:1957177 5'GT 1957177 Upstream 38bp
chr11 120099669 120099669 1 + T G COAD 120099667 + 120099647 120099687 41 GGTGGGGGACCACGGGAAGCCCTGCGTCTGCCGCTATGGCC GGTGGGGGACCACGGGAAGCCCGGCGTCTGCCGCTATGGCC < 41bp 0.389143655040916 0.731323929187495 0.4717997 0.90304315 prediction 0.462647858374991 Functional Gain - OAF ENSG00000184232 CDS Human protein_coding chr11:120099667 chr11:120099669 nonsynonymous SNV 0.104 4 23 hm5C_associated_SNPs_114656 0 0 0 0 1 OAF chr11:120099577 3'AG 120099577 Downstream 93bp
chr20 31688258 31688258 1 + C A STAD 31688257 + 31688237 31688277 41 AGAATTCTTGGCCTCATTTTCCACAGAAGGAGATAAGCTCA AGAATTCTTGGCCTCATTTTCAACAGAAGGAGATAAGCTCA < 41bp 0.469003021231674 0.731323339892821 0.13539085 0.35613564 prediction 0.462646679785641 Functional Gain - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31688257 chr20:31688258 synonymous SNV . 0 22 hm5C_associated_SNPs_114657 0 0 0 0 2 BPIFB4 chr20:31688232 3'AG 31688232 Downstream 27bp
chr20 31688258 31688258 1 + C A STAD 31688257 + 31688237 31688277 41 AGAATTCTTGGCCTCATTTTCCACAGAAGGAGATAAGCTCA AGAATTCTTGGCCTCATTTTCAACAGAAGGAGATAAGCTCA < 41bp 0.469003021231674 0.731323339892821 0.13539085 0.35613564 prediction 0.462646679785641 Functional Gain - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31688257 chr20:31688258 synonymous SNV . 0 22 hm5C_associated_SNPs_114657 0 0 0 0 2 BPIFB4 chr20:31688299 5'GT 31688299 Upstream 42bp
chr8 11418856 11418856 1 + C T rs146505280 11418855 + 11418835 11418875 41 GAGCGCATGAATTCCATCCACCGCGACCTGCGGGCGGCCAA GAGCGCATGAATTCCATCCACTGCGACCTGCGGGCGGCCAA < 41bp 0.475271698513555 0.73132189665307 0.13601929 0.09968856 prediction 0.46264379330614 Functional Gain - BLK ENSG00000136573 CDS Human protein_coding chr8:11418855 chr8:11418856 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_114658 0 0 0 0 1 BLK chr8:11418811 3'AG 11418811 Downstream 46bp
chr1 230923323 230923323 1 + C A rs142552467 230923319 + 230923299 230923339 41 CAGAGGAGGAGCAGCGGTTTCGGGCTCTGTTTGAACAAGTC CAGAGGAGGAGCAGCGGTTTCGGGATCTGTTTGAACAAGTC < 41bp 0.703033129225968 0.934340886942006 0.84978426 0.9048757 prediction 0.462615515432077 Functional Gain - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230923319 chr1:230923323 nonsynonymous SNV 0.600 1 25 hm5C_associated_SNPs_114660 0 0 0 0 2 CAPN9 chr1:230923268 3'AG 230923268 Downstream 56bp
chr1 230923323 230923323 1 + C A rs142552467 230923319 + 230923299 230923339 41 CAGAGGAGGAGCAGCGGTTTCGGGCTCTGTTTGAACAAGTC CAGAGGAGGAGCAGCGGTTTCGGGATCTGTTTGAACAAGTC < 41bp 0.703033129225968 0.934340886942006 0.84978426 0.9048757 prediction 0.462615515432077 Functional Gain - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230923319 chr1:230923323 nonsynonymous SNV 0.600 1 25 hm5C_associated_SNPs_114660 0 0 0 0 2 CAPN9 chr1:230923348 5'GT 230923348 Upstream 26bp
chr17 61908717 61908717 1 + C A UCEC 61908716 + 61908696 61908736 41 GCTACTAATAGGATTGATATCCTGGACTCGGCACTGCTTCG GCTACTAATAGGATTGATATCATGGACTCGGCACTGCTTCG < 41bp 0.469961387593522 0.73129504696373 0.4195808 0.64836776 prediction 0.462590093927459 Functional Gain - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61908716 chr17:61908717 nonsynonymous SNV 0.991 5 22 hm5C_associated_SNPs_114663 0 0 1 0 2 PSMC5 chr17:61908687 3'AG 61908687 Downstream 31bp
chr17 61908717 61908717 1 + C A UCEC 61908716 + 61908696 61908736 41 GCTACTAATAGGATTGATATCCTGGACTCGGCACTGCTTCG GCTACTAATAGGATTGATATCATGGACTCGGCACTGCTTCG < 41bp 0.469961387593522 0.73129504696373 0.4195808 0.64836776 prediction 0.462590093927459 Functional Gain - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61908716 chr17:61908717 nonsynonymous SNV 0.991 5 22 hm5C_associated_SNPs_114663 0 0 1 0 2 PSMC5 chr17:61908785 5'GT 61908785 Upstream 69bp
chr11 60886392 60886392 1 + C T BLCA 60886391 + 60886371 60886411 41 GAGTGTCTCATTGCAGAACCCCAGAAGACAACACCTCCAAC GAGTGTCTCATTGCAGAACCCTAGAAGACAACACCTCCAAC < 41bp 0.529065384218785 0.760357622208989 0.121584624 0.1494084 prediction 0.462584475980407 Functional Gain - CD5 ENSG00000110448 CDS Human protein_coding chr11:60886391 chr11:60886392 stopgain 0.111 0 22 hm5C_associated_SNPs_114665 0 0 0 0 2 CD5 chr11:60886387 3'AG 60886387 Downstream 6bp
chr11 60886392 60886392 1 + C T BLCA 60886391 + 60886371 60886411 41 GAGTGTCTCATTGCAGAACCCCAGAAGACAACACCTCCAAC GAGTGTCTCATTGCAGAACCCTAGAAGACAACACCTCCAAC < 41bp 0.529065384218785 0.760357622208989 0.121584624 0.1494084 prediction 0.462584475980407 Functional Gain - CD5 ENSG00000110448 CDS Human protein_coding chr11:60886391 chr11:60886392 stopgain 0.111 0 22 hm5C_associated_SNPs_114665 0 0 0 0 2 CD5 chr11:60886449 5'GT 60886449 Upstream 58bp
chr17 41345151 41345151 1 + A G UCEC 41345148 + 41345128 41345168 41 GTACCTCCGTTATGCCAATGCTCAGTGCAGCATTTGTGGAT GTACCTCCGTTATGCCAATGCTCGGTGCAGCATTTGTGGAT < 41bp 0.530897289712811 0.762180903840169 0.26179022 0.220904 prediction 0.462567228254716 Functional Gain - NBR1 ENSG00000188554 CDS Human protein_coding chr17:41345148 chr17:41345151 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_114669 0 0 1 0 1 NBR1 chr17:41345111 3'AG 41345111 Downstream 41bp
chr7 130027736 130027736 1 + C T UCEC 130027735 + 130027715 130027755 41 TACTCCTTCACCTTCGAGCTCCGGGACACTGGGCGCTATGG TACTCCTTCACCTTCGAGCTCTGGGACACTGGGCGCTATGG < 41bp 0.492374379381647 0.731276104660469 0.92257977 0.3265595 prediction 0.462552209320937 Functional Gain - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130027735 chr7:130027736 nonsynonymous SNV 0.987 4 22 hm5C_associated_SNPs_114671 0 0 0 0 1 CPA1 chr7:130027665 3'AG 130027665 Downstream 72bp
chr15 76484318 76484318 1 + C T COAD 76484317 + 76484297 76484337 41 CTCCCTCCGCAGTTTGAGATCCGGCAGCTGCGCGCGCACCT CTCCCTCCGCAGTTTGAGATCTGGCAGCTGCGCGCGCACCT < 41bp 0.52619524426666 0.757468966877765 0.9125016 0.5926334 prediction 0.462547445222211 Functional Gain - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76484317 chr15:76484318 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_114672 0 0 0 0 1 TMEM266 chr15:76484309 3'AG 76484309 Downstream 10bp
chr1 156593366 156593366 1 + A G LIHC 156593363 + 156593343 156593383 41 TTCCACAAAGCCCAAGGAGACCCAGGTAAGACCCCAGCCCA TTCCACAAAGCCCAAGGAGACCCGGGTAAGACCCCAGCCCA < 41bp 0.518083527480883 0.749356854057753 0.17491087 0.41091207 prediction 0.46254665315374 Functional Gain - HAPLN2 ENSG00000132702 CDS Human protein_coding chr1:156593363 chr1:156593366 synonymous SNV . 0 24 hm5C_associated_SNPs_114673 0 0 0 0 1 HAPLN2 chr1:156593367 5'GT 156593367 Upstream 2bp
chr16 27231984 27231984 1 + C T HNSC 27231983 + 27231963 27232003 41 CTGGAGAGATCCTGTTCATCCCGGTGAAATACTGGCATTAC CTGGAGAGATCCTGTTCATCCTGGTGAAATACTGGCATTAC < 41bp 0.51604018032499 0.747294815487952 0.8822281 0.6003384 prediction 0.462509270325924 Functional Gain - KDM8 ENSG00000155666 CDS Human protein_coding chr16:27231983 chr16:27231984 nonsynonymous SNV 0.005 5 22 hm5C_associated_SNPs_114681 0 0 0 0 1 KDM8 chr16:27231887 3'AG 27231887 Downstream 98bp
chr5 178454513 178454513 1 + C A STAD 178454509 + 178454489 178454529 41 AGGGATGTGGCCGTGTTCTTCAGCCAGGACGAGTGGTTGCA AGGGATGTGGCCGTGTTCTTCAGCAAGGACGAGTGGTTGCA < 41bp 0.703778314950918 0.935029243748379 0.47486544 0.6489788 prediction 0.462501857594922 Functional Gain - ZNF879 ENSG00000234284 CDS Human protein_coding chr5:178454509 chr5:178454513 nonsynonymous SNV 0.963 0 25 hm5C_associated_SNPs_114683 0 0 0 0 2 ZNF879 chr5:178454474 3'AG 178454474 Downstream 40bp
chr5 178454513 178454513 1 + C A STAD 178454509 + 178454489 178454529 41 AGGGATGTGGCCGTGTTCTTCAGCCAGGACGAGTGGTTGCA AGGGATGTGGCCGTGTTCTTCAGCAAGGACGAGTGGTTGCA < 41bp 0.703778314950918 0.935029243748379 0.47486544 0.6489788 prediction 0.462501857594922 Functional Gain - ZNF879 ENSG00000234284 CDS Human protein_coding chr5:178454509 chr5:178454513 nonsynonymous SNV 0.963 0 25 hm5C_associated_SNPs_114683 0 0 0 0 2 ZNF879 chr5:178454600 5'GT 178454600 Upstream 88bp
chr3 23997604 23997604 1 + C A rs61732085 23997600 + 23997580 23997620 41 ATTCCACTATGGAGTTCATGCTTGCGAAGGCTGTAAGGTAA ATTCCACTATGGAGTTCATGCTTGAGAAGGCTGTAAGGTAA < 41bp 0.330822405804819 0.731244501874001 0.02982226 0.072508186 prediction 0.462489003748003 Functional Gain - NR1D2 ENSG00000174738 CDS Human protein_coding chr3:23997600 chr3:23997604 stopgain 0.988 1 25 hm5C_associated_SNPs_114685 0 0 1 0 2 NR1D2 chr3:23997528 3'AG 23997528 Downstream 77bp
chr3 23997604 23997604 1 + C A rs61732085 23997600 + 23997580 23997620 41 ATTCCACTATGGAGTTCATGCTTGCGAAGGCTGTAAGGTAA ATTCCACTATGGAGTTCATGCTTGAGAAGGCTGTAAGGTAA < 41bp 0.330822405804819 0.731244501874001 0.02982226 0.072508186 prediction 0.462489003748003 Functional Gain - NR1D2 ENSG00000174738 CDS Human protein_coding chr3:23997600 chr3:23997604 stopgain 0.988 1 25 hm5C_associated_SNPs_114685 0 0 1 0 2 NR1D2 chr3:23997616 5'GT 23997616 Upstream 13bp
chr22 42962330 42962330 1 + C A BRCA 42962329 + 42962309 42962349 41 GGTCTGGTTCTGAACAGAGACCAGAGGCTCGCCTGGGTGAG GGTCTGGTTCTGAACAGAGACAAGAGGCTCGCCTGGGTGAG < 41bp 0.557756418670126 0.789000690338016 0.17902163 0.37744778 prediction 0.462488543335779 Functional Gain - SERHL2 ENSG00000183569 CDS Human protein_coding chr22:42962329 chr22:42962330 nonsynonymous SNV 0.928 0 22 hm5C_associated_SNPs_114686 0 0 0 0 2 SERHL2 chr22:42962310 3'AG 42962310 Downstream 21bp
chr22 42962330 42962330 1 + C A BRCA 42962329 + 42962309 42962349 41 GGTCTGGTTCTGAACAGAGACCAGAGGCTCGCCTGGGTGAG GGTCTGGTTCTGAACAGAGACAAGAGGCTCGCCTGGGTGAG < 41bp 0.557756418670126 0.789000690338016 0.17902163 0.37744778 prediction 0.462488543335779 Functional Gain - SERHL2 ENSG00000183569 CDS Human protein_coding chr22:42962329 chr22:42962330 nonsynonymous SNV 0.928 0 22 hm5C_associated_SNPs_114686 0 0 0 0 2 SERHL2 chr22:42962344 5'GT 42962344 Upstream 15bp
chr1 182791305 182791305 1 + A G LUAD 182791302 + 182791282 182791322 41 AGATGTTGGAGGCTTTTGAACAAAAGGACTTCTCTTTAGCC AGATGTTGGAGGCTTTTGAACAAGAGGACTTCTCTTTAGCC < 41bp 0.507014503876371 0.738251036616791 0.33500803 0.8675862 prediction 0.46247306548084 Functional Gain - NPL ENSG00000135838 CDS Human protein_coding chr1:182791302 chr1:182791305 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_114691 0 0 0 1 1 NPL chr1:182791250 3'AG 182791250 Downstream 56bp
chr11 125447457 125447457 1 + C T UCEC 125447456 + 125447436 125447476 41 GTGCTTCAGTCGGTAACAGCCCGAATTATCGGTAAGTGTAT GTGCTTCAGTCGGTAACAGCCTGAATTATCGGTAAGTGTAT < 41bp 0.484426417308965 0.731229312890345 0.06947774 0.07629049 prediction 0.462458625780689 Functional Gain - EI24 ENSG00000149547 CDS Human protein_coding chr11:125447456 chr11:125447457 stopgain 0.681 1 22 hm5C_associated_SNPs_114695 0 0 1 0 2 EI24 chr11:125447400 3'AG 125447400 Downstream 58bp
chr11 125447457 125447457 1 + C T UCEC 125447456 + 125447436 125447476 41 GTGCTTCAGTCGGTAACAGCCCGAATTATCGGTAAGTGTAT GTGCTTCAGTCGGTAACAGCCTGAATTATCGGTAAGTGTAT < 41bp 0.484426417308965 0.731229312890345 0.06947774 0.07629049 prediction 0.462458625780689 Functional Gain - EI24 ENSG00000149547 CDS Human protein_coding chr11:125447456 chr11:125447457 stopgain 0.681 1 22 hm5C_associated_SNPs_114695 0 0 1 0 2 EI24 chr11:125447466 5'GT 125447466 Upstream 10bp
chr4 88903651 88903651 1 + A G UCEC 88903648 + 88903628 88903668 41 TTGTGCCGTGATTCAGTACCCTGATGCTACAGACGAGGACA TTGTGCCGTGATTCAGTACCCTGGTGCTACAGACGAGGACA < 41bp 0.510887108391768 0.742112453935766 0.30849996 0.2725578 prediction 0.462450691087997 Functional Gain - SPP1 ENSG00000118785 CDS Human protein_coding chr4:88903648 chr4:88903651 nonsynonymous SNV 0.601 0 24 hm5C_associated_SNPs_114697 0 0 1 0 1 SPP1 chr4:88903644 3'AG 88903644 Downstream 8bp
chr3 16264174 16264174 1 + T A LIHC 16264170 + 16264150 16264190 41 TTCACTTTGGCAGCCCACAGCACCTGTGCTTTGCTGTCAGG TTCACTTTGGCAGCCCACAGCACCAGTGCTTTGCTGTCAGG < 41bp 0.391855192512808 0.731225027650575 0.21306384 0.30086273 prediction 0.462450055301149 Functional Gain - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16264170 chr3:16264174 nonsynonymous SNV 0.738 4 25 hm5C_associated_SNPs_114698 0 0 0 0 2 GALNT15 chr3:16264122 3'AG 16264122 Downstream 53bp
chr3 16264174 16264174 1 + T A LIHC 16264170 + 16264150 16264190 41 TTCACTTTGGCAGCCCACAGCACCTGTGCTTTGCTGTCAGG TTCACTTTGGCAGCCCACAGCACCAGTGCTTTGCTGTCAGG < 41bp 0.391855192512808 0.731225027650575 0.21306384 0.30086273 prediction 0.462450055301149 Functional Gain - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16264170 chr3:16264174 nonsynonymous SNV 0.738 4 25 hm5C_associated_SNPs_114698 0 0 0 0 2 GALNT15 chr3:16264265 5'GT 16264265 Upstream 92bp
chr19 45974166 45974166 1 + C T COAD 45974165 + 45974145 45974185 41 ACCAGTGGGCCTGGGCCTGCCCGCCCAGCCCGAGCCCGGCC ACCAGTGGGCCTGGGCCTGCCTGCCCAGCCCGAGCCCGGCC < 41bp 0.487756610622425 0.731222276107643 0.11035064 0.09609103 prediction 0.462444552215286 Functional Gain - FOSB ENSG00000125740 CDS Human protein_coding chr19:45974165 chr19:45974166 nonsynonymous SNV 0.950 3 22 hm5C_associated_SNPs_114700 0 0 0 0 1 FOSB chr19:45974207 5'GT 45974207 Upstream 42bp
chr12 81568637 81568637 1 + T G HNSC 81568635 + 81568615 81568655 41 GCAGAGCATGGAGTAGCTGCCTTGTTTACAGCACCAACTGC GCAGAGCATGGAGTAGCTGCCTGGTTTACAGCACCAACTGC < 41bp 0.388007477374738 0.731216220899657 0.0662736 0.41454232 prediction 0.462432441799313 Functional Gain - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81568635 chr12:81568637 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_114702 0 0 0 0 2 ACSS3 chr12:81568567 3'AG 81568567 Downstream 71bp
chr12 81568637 81568637 1 + T G HNSC 81568635 + 81568615 81568655 41 GCAGAGCATGGAGTAGCTGCCTTGTTTACAGCACCAACTGC GCAGAGCATGGAGTAGCTGCCTGGTTTACAGCACCAACTGC < 41bp 0.388007477374738 0.731216220899657 0.0662736 0.41454232 prediction 0.462432441799313 Functional Gain - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81568635 chr12:81568637 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_114702 0 0 0 0 2 ACSS3 chr12:81568718 5'GT 81568718 Upstream 82bp
chr13 32798488 32798488 1 + C T SKCM 32798487 + 32798467 32798507 41 GCCCCCCTGGTTGACTATCTCCCGGAGACCATCACTCCCCG GCCCCCCTGGTTGACTATCTCTCGGAGACCATCACTCCCCG < 41bp 0.487969930643626 0.731213392061186 0.2889897 0.3907064 prediction 0.462426784122372 Functional Gain - FRY ENSG00000073910 CDS Human protein_coding chr13:32798487 chr13:32798488 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_114704 0 0 0 0 1 FRY chr13:32798522 5'GT 32798522 Upstream 35bp
chr1 165532816 165532816 1 + C T LGG 165532815 + 165532795 165532835 41 ACCCGGGTGGGGAACCCACTCCGATACATGTGCATCACGCA ACCCGGGTGGGGAACCCACTCTGATACATGTGCATCACGCA < 41bp 0.519354088956261 0.750560975739357 0.3328323 0.24308789 prediction 0.462413773566193 Functional Gain - LRRC52 ENSG00000162763 CDS Human protein_coding chr1:165532815 chr1:165532816 stopgain 0.945 0 22 hm5C_associated_SNPs_114706 0 0 0 0 1 LRRC52 chr1:165532742 3'AG 165532742 Downstream 75bp
chr19 1049343 1049343 1 + C T LUSC 1049342 + 1049322 1049362 41 AGAAGCGCTTTCCTGGAAGCCCGCAGCCAGCCCTGCGGGGG AGAAGCGCTTTCCTGGAAGCCTGCAGCCAGCCCTGCGGGGG < 41bp 0.542594150351557 0.773800982678595 0.67311484 0.747877 prediction 0.462413664654076 Functional Gain - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1049342 chr19:1049343 nonsynonymous SNV 0.010 1 22 hm5C_associated_SNPs_114707 0 0 1 0 2 ABCA7 chr19:1049265 3'AG 1049265 Downstream 79bp
chr19 1049343 1049343 1 + C T LUSC 1049342 + 1049322 1049362 41 AGAAGCGCTTTCCTGGAAGCCCGCAGCCAGCCCTGCGGGGG AGAAGCGCTTTCCTGGAAGCCTGCAGCCAGCCCTGCGGGGG < 41bp 0.542594150351557 0.773800982678595 0.67311484 0.747877 prediction 0.462413664654076 Functional Gain - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1049342 chr19:1049343 nonsynonymous SNV 0.010 1 22 hm5C_associated_SNPs_114707 0 0 1 0 2 ABCA7 chr19:1049436 5'GT 1049436 Upstream 94bp
chr19 50905494 50905494 1 + C T SKCM 50905493 + 50905473 50905513 41 TACCACGGGCACGGCCCCTCCCCGTTCCTGCGCATCACCGT TACCACGGGCACGGCCCCTCCTCGTTCCTGCGCATCACCGT < 41bp 0.482755954352891 0.731202752174113 0.13517985 0.23289847 prediction 0.462405504348227 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905493 chr19:50905494 nonsynonymous SNV 0.104 0 22 hm5C_associated_SNPs_114708 0 0 1 0 1 POLD1 chr19:50905462 3'AG 50905462 Downstream 33bp
chrX 48386663 48386663 1 + C T COAD 48386662 + 48386642 48386682 41 CTCTACTTCCTGACAGAGCACCGCGACGGATTCCAGCACGG CTCTACTTCCTGACAGAGCACTGCGACGGATTCCAGCACGG < 41bp 0.497664728206053 0.731202515667238 0.2892651 0.17913675 prediction 0.462405031334477 Functional Gain - EBP ENSG00000147155 CDS Human protein_coding chrX:48386662 chrX:48386663 nonsynonymous SNV 0.004 4 22 hm5C_associated_SNPs_114709 3 0 1 0 1 EBP chrX:48386622 3'AG 48386622 Downstream 42bp
chr18 29125751 29125751 1 + A G UCEC 29125748 + 29125728 29125768 41 AGATTGCCTTCTGGTTTATTCTCAGGAAGAAACTGAATCGC AGATTGCCTTCTGGTTTATTCTCGGGAAGAAACTGAATCGC < 41bp 0.51498015834274 0.746179833271918 0.031189322 0.1584621 prediction 0.462399349858356 Functional Gain - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29125748 chr18:29125751 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_114712 0 0 1 0 1 DSG2 chr18:29125684 3'AG 29125684 Downstream 68bp
chr6 31675308 31675308 1 + T C rs186360063 31675306 + 31675286 31675326 41 GTCCCTCACCACCTACTCTACATGGGGACGAACACCTGTCA GTCCCTCACCACCTACTCTACACGGGGACGAACACCTGTCA < 41bp 0.521793952736075 0.75298841756283 0.19660151 0.15459672 prediction 0.46238892965351 Functional Gain - LY6G6F ENSG00000204424;ENSG00000250641 CDS Human other chr6:31675306 chr6:31675308 synonymous SNV . 0 23 hm5C_associated_SNPs_114713 0 0 0 0 1 LY6G6F chr6:31675235 3'AG 31675235 Downstream 74bp
chr19 58864756 58864756 1 + C G rs200176996 58864755 + 58864735 58864775 41 CCCGCCCCAGGGACCCAGACCCCAGGAGGCCTCACCCCACA CCCGCCCCAGGGACCCAGACCGCAGGAGGCCTCACCCCACA < 41bp 0.415297515434223 0.731192370162138 0.5098131 0.71291316 prediction 0.462384740324276 Functional Gain - A1BG-AS1 ENSG00000268895 ncRNA_exonic Human protein_coding chr19:58864755 chr19:58864756 . . 0 22 hm5C_associated_SNPs_114714 0 0 0 0 3 A1BG chr19:58864687 3'AG 58864687 Downstream 70bp
chr19 58864756 58864756 1 + C G rs200176996 58864755 + 58864735 58864775 41 CCCGCCCCAGGGACCCAGACCCCAGGAGGCCTCACCCCACA CCCGCCCCAGGGACCCAGACCGCAGGAGGCCTCACCCCACA < 41bp 0.415297515434223 0.731192370162138 0.5098131 0.71291316 prediction 0.462384740324276 Functional Gain - A1BG-AS1 ENSG00000268895 ncRNA_exonic Human antisense chr19:58864755 chr19:58864756 . . 0 22 hm5C_associated_SNPs_114714 0 0 0 0 3 A1BG-AS1 chr19:58864745 3'AG 58864745 Downstream 12bp
chr19 58864756 58864756 1 + C G rs200176996 58864755 + 58864735 58864775 41 CCCGCCCCAGGGACCCAGACCCCAGGAGGCCTCACCCCACA CCCGCCCCAGGGACCCAGACCGCAGGAGGCCTCACCCCACA < 41bp 0.415297515434223 0.731192370162138 0.5098131 0.71291316 prediction 0.462384740324276 Functional Gain - A1BG-AS1 ENSG00000268895 ncRNA_exonic Human antisense chr19:58864755 chr19:58864756 . . 0 22 hm5C_associated_SNPs_114714 0 0 0 0 3 A1BG-AS1 chr19:58864840 5'GT 58864840 Upstream 85bp
chr19 14029358 14029358 1 + C T SKCM 14029357 + 14029337 14029377 41 GGCCCTGAGCCGGGGTGAGCCCGTGGACCTCTCCTGCCTGC GGCCCTGAGCCGGGGTGAGCCTGTGGACCTCTCCTGCCTGC < 41bp 0.515960625443688 0.747147540610342 0.8173877 0.5321798 prediction 0.462373830333308 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14029357 chr19:14029358 synonymous SNV . 0 22 hm5C_associated_SNPs_114717 0 0 1 0 1 CC2D1A chr19:14029389 5'GT 14029389 Upstream 32bp
chr3 46944031 46944031 1 + C T SKCM 46944030 + 46944010 46944050 41 GCCCAGGAAGCTGCTCAAATCCACGCTGGTGCTCATGCCCC GCCCAGGAAGCTGCTCAAATCTACGCTGGTGCTCATGCCCC < 41bp 0.482431779327298 0.73118601868503 0.7159164 0.53610003 prediction 0.462372037370059 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46944030 chr3:46944031 synonymous SNV . 0 22 hm5C_associated_SNPs_114719 0 0 0 0 1 PTH1R chr3:46944016 3'AG 46944016 Downstream 16bp
chr11 60637025 60637025 1 + C T UCEC 60637024 + 60637004 60637044 41 CTGCAGGATGGGCGTTTCCACCTGAGGGTGTTCATGGAGGC CTGCAGGATGGGCGTTTCCACTTGAGGGTGTTCATGGAGGC < 41bp 0.538093368481081 0.769278501567725 0.1472919 0.21028742 prediction 0.462370266173289 Functional Gain - ZP1 ENSG00000149506 CDS Human protein_coding chr11:60637024 chr11:60637025 synonymous SNV . 0 22 hm5C_associated_SNPs_114720 0 0 0 0 1 ZP1 chr11:60637010 3'AG 60637010 Downstream 16bp
chr6 35259397 35259397 1 + C T rs33959228 35259396 + 35259376 35259416 41 TCCTTCACCACATCTAACATCCGCAAGGTACATGTGCGCAC TCCTTCACCACATCTAACATCTGCAAGGTACATGTGCGCAC < 41bp 0.57590050713517 0.807082536356539 0.20084089 0.2900923 prediction 0.46236405844274 Functional Gain - ZNF76 ENSG00000065029 CDS Human protein_coding chr6:35259396 chr6:35259397 nonsynonymous SNV 0.982 3 22 hm5C_associated_SNPs_114721 0 1 1 0 1 ZNF76 chr6:35259335 3'AG 35259335 Downstream 63bp
chr15 99473511 99473511 1 + C T SKCM 99473510 + 99473490 99473530 41 TGCTGTATGCCTCTGTGAACCCGGAGTACTTCAGCGCTGCT TGCTGTATGCCTCTGTGAACCTGGAGTACTTCAGCGCTGCT < 41bp 0.55701333116509 0.788194700950887 0.89411974 0.86573213 prediction 0.462362739571594 Functional Gain - IGF1R ENSG00000140443 CDS Human protein_coding chr15:99473510 chr15:99473511 nonsynonymous SNV 0.983 5 22 hm5C_associated_SNPs_114722 0 0 1 1 2 IGF1R chr15:99473464 3'AG 99473464 Downstream 48bp
chr15 99473511 99473511 1 + C T SKCM 99473510 + 99473490 99473530 41 TGCTGTATGCCTCTGTGAACCCGGAGTACTTCAGCGCTGCT TGCTGTATGCCTCTGTGAACCTGGAGTACTTCAGCGCTGCT < 41bp 0.55701333116509 0.788194700950887 0.89411974 0.86573213 prediction 0.462362739571594 Functional Gain - IGF1R ENSG00000140443 CDS Human protein_coding chr15:99473510 chr15:99473511 nonsynonymous SNV 0.983 5 22 hm5C_associated_SNPs_114722 0 0 1 1 2 IGF1R chr15:99473534 5'GT 99473534 Upstream 24bp
chr7 142561931 142561931 1 + C A LUAD 142561927 + 142561907 142561947 41 CTGGGTGTGAGCGGCGGCACCTGCCGGGAGACCTTCACCCT CTGGGTGTGAGCGGCGGCACCTGCAGGGAGACCTTCACCCT < 41bp 0.707869892993935 0.939049288047114 0.3929553 0.8586104 prediction 0.462358790106358 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142561927 chr7:142561931 synonymous SNV . 0 25 hm5C_associated_SNPs_114723 0 0 0 0 1 EPHB6 chr7:142562020 5'GT 142562020 Upstream 90bp
chr16 77233338 77233338 1 + C G rs8398 77233337 + 77233317 77233357 41 GCGAGGCTCGCGCGCAGGCCCCGCGTTGGAAAATGGCGGGG GCGAGGCTCGCGCGCAGGCCCGGCGTTGGAAAATGGCGGGG < 41bp 0.582284168845936 0.813460271225073 0.05005768 0.24445134 prediction 0.462352204758273 Functional Gain - SYCE1L;MON1B ENSG00000205078;ENSG00000103111 UTR5;UTR3 Human protein_coding chr16:77233337 chr16:77233338 . . 0 22 hm5C_associated_SNPs_114724 0 0 1 0 1 SYCE1L chr16:77233409 5'GT 77233409 Upstream 72bp
chr10 75675024 75675024 1 + C T UCEC 75675023 + 75675003 75675043 41 ACCTAGCCGACTATCTCTATCCGGAGCAGCTGAAAATGACT ACCTAGCCGACTATCTCTATCTGGAGCAGCTGAAAATGACT < 41bp 0.479883011214919 0.731173911624846 0.92020917 0.554419 prediction 0.462347823249691 Functional Gain - PLAU ENSG00000122861 CDS Human protein_coding chr10:75675023 chr10:75675024 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_114725 0 0 0 2 1 PLAU chr10:75675009 3'AG 75675009 Downstream 16bp
chr2 233393680 233393680 1 + A G SARC 233393677 + 233393657 233393697 41 ATCATTGATCCTGAAGGCTTCACAGGTGCTGGGAACAGCCG ATCATTGATCCTGAAGGCTTCACGGGTGCTGGGAACAGCCG < 41bp 0.51911262055778 0.750280396158118 0.26774675 0.42551628 prediction 0.462335551200677 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233393677 chr2:233393680 synonymous SNV . 0 24 hm5C_associated_SNPs_114726 0 0 0 0 1 CHRND chr2:233393681 5'GT 233393681 Upstream 2bp
chr8 22969277 22969277 1 + C T SKCM 22969276 + 22969256 22969296 41 TGCCCGGCAGGAGGAAGTTCCCCAGCAGACAGTGGCCCCAC TGCCCGGCAGGAGGAAGTTCCTCAGCAGACAGTGGCCCCAC < 41bp 0.529195645605572 0.760359180046747 0.37028712 0.35036153 prediction 0.462327068882349 Functional Gain - TNFRSF10C ENSG00000173535 CDS Human protein_coding chr8:22969276 chr8:22969277 synonymous SNV . 0 22 hm5C_associated_SNPs_114727 0 0 0 0 2 TNFRSF10C chr8:22969233 3'AG 22969233 Downstream 45bp
chr8 22969277 22969277 1 + C T SKCM 22969276 + 22969256 22969296 41 TGCCCGGCAGGAGGAAGTTCCCCAGCAGACAGTGGCCCCAC TGCCCGGCAGGAGGAAGTTCCTCAGCAGACAGTGGCCCCAC < 41bp 0.529195645605572 0.760359180046747 0.37028712 0.35036153 prediction 0.462327068882349 Functional Gain - TNFRSF10C ENSG00000173535 CDS Human protein_coding chr8:22969276 chr8:22969277 synonymous SNV . 0 22 hm5C_associated_SNPs_114727 0 0 0 0 2 TNFRSF10C chr8:22969338 5'GT 22969338 Upstream 62bp
chr6 168439371 168439371 1 + C A LUSC 168439367 + 168439347 168439387 41 GGTCAAGCGTGAGGTGGTGACAGCCAAGGATGGACGGACAG GGTCAAGCGTGAGGTGGTGACAGCAAAGGATGGACGGACAG < 41bp 0.706700551165105 0.937856001392717 0.39315426 0.500473 prediction 0.462310900455223 Functional Gain - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168439367 chr6:168439371 synonymous SNV . 0 25 hm5C_associated_SNPs_114730 0 0 0 0 1 KIF25 chr6:168439409 5'GT 168439409 Upstream 39bp
chr19 33463214 33463214 1 + C G rs79371948 33463210 + 33463190 33463230 41 AGACTGGGACGGTGGGGTTCCTGCCGGCTGTATTCGGGCCT AGACTGGGACGGTGGGGTTCCTGCGGGCTGTATTCGGGCCT < 41bp 0.574107223877618 0.805255884495765 0.70589405 0.9105252 prediction 0.462297321236293 Functional Gain - FAAP24 ENSG00000131944 UTR5 Human protein_coding chr19:33463210 chr19:33463214 . . 0 25 hm5C_associated_SNPs_114732 0 0 1 0 1 FAAP24 chr19:33463252 5'GT 33463252 Upstream 39bp
chr2 36994395 36994395 1 + C A rs190742214 36994391 + 36994371 36994411 41 GCTTCTACCACCAGCATCCCCAGACCACAATCAGTGGGCCA GCTTCTACCACCAGCATCCCCAGAACACAATCAGTGGGCCA < 41bp 0.323423797755491 0.731122961979295 0.35208863 0.24045014 prediction 0.462245923958591 Functional Gain - VIT ENSG00000205221 CDS Human protein_coding chr2:36994391 chr2:36994395 nonsynonymous SNV 0.525 0 25 hm5C_associated_SNPs_114737 0 0 0 0 1 VIT chr2:36994428 5'GT 36994428 Upstream 34bp
chr1 24674016 24674016 1 + C A GBM 24674015 + 24673995 24674035 41 TGACGCGCTCATGTTGAAGACCCCAGACCTGAAGGGGCTGA TGACGCGCTCATGTTGAAGACACCAGACCTGAAGGGGCTGA < 41bp 0.572075026892531 0.803196989389412 0.3879353 0.3955138 prediction 0.462243924993763 Functional Gain - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24674015 chr1:24674016 synonymous SNV . 0 22 hm5C_associated_SNPs_114738 0 0 0 0 2 GRHL3 chr1:24673958 3'AG 24673958 Downstream 59bp
chr1 24674016 24674016 1 + C A GBM 24674015 + 24673995 24674035 41 TGACGCGCTCATGTTGAAGACCCCAGACCTGAAGGGGCTGA TGACGCGCTCATGTTGAAGACACCAGACCTGAAGGGGCTGA < 41bp 0.572075026892531 0.803196989389412 0.3879353 0.3955138 prediction 0.462243924993763 Functional Gain - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24674015 chr1:24674016 synonymous SNV . 0 22 hm5C_associated_SNPs_114738 0 0 0 0 2 GRHL3 chr1:24674043 5'GT 24674043 Upstream 28bp
chr12 109826620 109826620 1 + C T UCEC 109826619 + 109826599 109826639 41 TCTGCCTTTGTCGACAACCTCCGCAAGCGTTTCAGCGAGAA TCTGCCTTTGTCGACAACCTCTGCAAGCGTTTCAGCGAGAA < 41bp 0.492931548425245 0.73111869805562 0.38743365 0.50237566 prediction 0.462237396111241 Functional Gain - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109826619 chr12:109826620 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_114741 0 0 0 0 1 MYO1H chr12:109826649 5'GT 109826649 Upstream 30bp
chrX 150348694 150348694 1 + C A HNSC 150348693 + 150348673 150348713 41 CTGCTACGTGAGGATCTGGACCAAAGTGCTGGCGGCCCGTG CTGCTACGTGAGGATCTGGACAAAAGTGCTGGCGGCCCGTG < 41bp 0.593001453016267 0.824094201847081 0.04546991 0.2676159 prediction 0.462185497661628 Functional Gain - GPR50 ENSG00000102195 CDS Human protein_coding chrX:150348693 chrX:150348694 synonymous SNV . 0 22 hm5C_associated_SNPs_114749 0 0 0 0 1 GPR50 chrX:150348751 5'GT 150348751 Upstream 58bp
chr1 150484952 150484952 1 + C T LUAD 150484951 + 150484931 150484971 41 TTGCCCGTCGGGCTCCTTACCCCAACTATGACCGGGACATC TTGCCCGTCGGGCTCCTTACCTCAACTATGACCGGGACATC < 41bp 0.597790679084028 0.828875928543688 0.2326093 0.16890419 prediction 0.462170498919319 Functional Gain - ECM1 ENSG00000143369 CDS Human protein_coding chr1:150484951 chr1:150484952 nonsynonymous SNV 0.854 5 22 hm5C_associated_SNPs_114751 0 0 1 0 1 ECM1 chr1:150485048 5'GT 150485048 Upstream 97bp
chr6 35287768 35287768 1 + C T CESC 35287767 + 35287747 35287787 41 CTGGAGGAGGTGCGGCAGAACCGGCAGAGGGCTGACGAGGA CTGGAGGAGGTGCGGCAGAACTGGCAGAGGGCTGACGAGGA < 41bp 0.518967242614466 0.750052255856923 0.79233575 0.57443935 prediction 0.462170026484913 Functional Gain - DEF6 ENSG00000023892 CDS Human protein_coding chr6:35287767 chr6:35287768 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_114753 0 0 0 0 1 DEF6 chr6:35287794 5'GT 35287794 Upstream 27bp
chr12 27842099 27842099 1 + C T COAD 27842098 + 27842078 27842118 41 AGCGAGATGCCATGGAGCTGCCGGATTATGTACTTCTAACA AGCGAGATGCCATGGAGCTGCTGGATTATGTACTTCTAACA < 41bp 0.56555198143732 0.796635650208772 0.35834926 0.35094404 prediction 0.462167337542904 Functional Gain - PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27842098 chr12:27842099 nonsynonymous SNV 0.304 2 22 hm5C_associated_SNPs_114755 0 0 0 0 1 PPFIBP1 chr12:27842136 5'GT 27842136 Upstream 38bp
chr1 6680349 6680349 1 + C T SKCM 6680348 + 6680328 6680368 41 CAGGGAAAGCAGGTGGTGTTCCGAGATGAGGACAGCACTGG CAGGGAAAGCAGGTGGTGTTCTGAGATGAGGACAGCACTGG < 41bp 0.530745469379389 0.761826996395671 0.80470407 0.40859303 prediction 0.462163054032563 Functional Gain - PHF13 ENSG00000116273 CDS Human protein_coding chr1:6680348 chr1:6680349 stopgain 0.997 1 22 hm5C_associated_SNPs_114756 0 0 1 0 1 PHF13 chr1:6680397 5'GT 6680397 Upstream 49bp
chr12 113379390 113379390 1 + C T rs12819767 113379389 + 113379369 113379409 41 GCCCAGGGAGGCTCCTCGGGCCGGGGCACAGCTCTCAAGGG GCCCAGGGAGGCTCCTCGGGCTGGGGCACAGCTCTCAAGGG < 41bp 0.515706178198518 0.74678671212169 0.89670026 0.7299533 prediction 0.462161067846344 Functional Gain - OAS3 ENSG00000111331 CDS Human protein_coding chr12:113379389 chr12:113379390 nonsynonymous SNV 0.905 3 22 hm5C_associated_SNPs_114758 0 0 0 0 1 OAS3 chr12:113379375 3'AG 113379375 Downstream 16bp
chr7 2748803 2748803 1 + C A rs58726146 2748799 + 2748779 2748819 41 GGCCCTGGTAGAGGCAGCAGCAGACGGCCCCGAGGCCCCCC GGCCCTGGTAGAGGCAGCAGCAGAAGGCCCCGAGGCCCCCC < 41bp 0.690662206550506 0.92174152438046 0.6005462 0.7218182 prediction 0.462158635659908 Functional Gain - AMZ1 ENSG00000174945 CDS Human protein_coding chr7:2748799 chr7:2748803 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_114759 0 0 0 0 2 AMZ1 chr7:2748709 3'AG 2748709 Downstream 95bp
chr7 2748803 2748803 1 + C A rs58726146 2748799 + 2748779 2748819 41 GGCCCTGGTAGAGGCAGCAGCAGACGGCCCCGAGGCCCCCC GGCCCTGGTAGAGGCAGCAGCAGAAGGCCCCGAGGCCCCCC < 41bp 0.690662206550506 0.92174152438046 0.6005462 0.7218182 prediction 0.462158635659908 Functional Gain - AMZ1 ENSG00000174945 CDS Human protein_coding chr7:2748799 chr7:2748803 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_114759 0 0 0 0 2 AMZ1 chr7:2748878 5'GT 2748878 Upstream 76bp
chr16 88871951 88871951 1 + C T rs140700251 88871950 + 88871930 88871970 41 CAGGTGCTGGCGGAGATGTTCCGCAGCATGGACACCATCGT CAGGTGCTGGCGGAGATGTTCTGCAGCATGGACACCATCGT < 41bp 0.57300030198364 0.804068030417113 0.29293263 0.23509273 prediction 0.462135456866947 Functional Gain - CDT1 ENSG00000167513 CDS Human protein_coding chr16:88871950 chr16:88871951 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_114763 0 0 1 0 1 CDT1 chr16:88872045 5'GT 88872045 Upstream 95bp
chr1 160091024 160091024 1 + C T SKCM 160091023 + 160091003 160091043 41 GATGAGCTGGGCCGCAAATACCAAGTGGACCTGTCCAAGGT GATGAGCTGGGCCGCAAATACTAAGTGGACCTGTCCAAGGT < 41bp 0.471925505672045 0.73106417171441 0.87942094 0.55077845 prediction 0.462128343428819 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160091023 chr1:160091024 stopgain 1.000 0 22 hm5C_associated_SNPs_114764 0 0 0 0 2 ATP1A2 chr1:160090982 3'AG 160090982 Downstream 43bp
chr1 160091024 160091024 1 + C T SKCM 160091023 + 160091003 160091043 41 GATGAGCTGGGCCGCAAATACCAAGTGGACCTGTCCAAGGT GATGAGCTGGGCCGCAAATACTAAGTGGACCTGTCCAAGGT < 41bp 0.471925505672045 0.73106417171441 0.87942094 0.55077845 prediction 0.462128343428819 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160091023 chr1:160091024 stopgain 1.000 0 22 hm5C_associated_SNPs_114764 0 0 0 0 2 ATP1A2 chr1:160091041 5'GT 160091041 Upstream 18bp
chr14 23313910 23313910 1 + C T UCEC 23313909 + 23313889 23313929 41 AAGCACATTAAGGAGCTGGGCCGAGGGCTGCCTACCGACAA AAGCACATTAAGGAGCTGGGCTGAGGGCTGCCTACCGACAA < 41bp 0.491180637101164 0.731058267026626 0.7631054 0.5018844 prediction 0.462116534053252 Functional Gain - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23313909 chr14:23313910 stopgain 0.990 0 22 hm5C_associated_SNPs_114767 0 0 0 0 2 MMP14 chr14:23313839 3'AG 23313839 Downstream 72bp
chr14 23313910 23313910 1 + C T UCEC 23313909 + 23313889 23313929 41 AAGCACATTAAGGAGCTGGGCCGAGGGCTGCCTACCGACAA AAGCACATTAAGGAGCTGGGCTGAGGGCTGCCTACCGACAA < 41bp 0.491180637101164 0.731058267026626 0.7631054 0.5018844 prediction 0.462116534053252 Functional Gain - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23313909 chr14:23313910 stopgain 0.990 0 22 hm5C_associated_SNPs_114767 0 0 0 0 2 MMP14 chr14:23313989 5'GT 23313989 Upstream 80bp
chr19 5131955 5131955 1 + C T rs45459493 5131954 + 5131934 5131974 41 AAGAAGAGCCGGCGCCATCCCCTGGGCCGGCCGCCCACCCG AAGAAGAGCCGGCGCCATCCCTTGGGCCGGCCGCCCACCCG < 41bp 0.533110966173909 0.764168868541117 0.62702286 0.33850372 prediction 0.462115804734416 Functional Gain - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5131954 chr19:5131955 synonymous SNV . 0 22 hm5C_associated_SNPs_114768 0 0 1 0 1 KDM4B chr19:5131898 3'AG 5131898 Downstream 58bp
chr2 234243696 234243696 1 + C T SKCM 234243695 + 234243675 234243715 41 CGAGAAAGGAGAGGCATTGCCCTGGATGGGAAAATCAAGCA CGAGAAAGGAGAGGCATTGCCTTGGATGGGAAAATCAAGCA < 41bp 0.544774582511178 0.775828789037884 0.110926 0.14357775 prediction 0.462108413053413 Functional Gain - SAG ENSG00000130561 CDS Human protein_coding chr2:234243695 chr2:234243696 synonymous SNV . 0 22 hm5C_associated_SNPs_114769 0 0 0 0 2 SAG chr2:234243608 3'AG 234243608 Downstream 89bp
chr2 234243696 234243696 1 + C T SKCM 234243695 + 234243675 234243715 41 CGAGAAAGGAGAGGCATTGCCCTGGATGGGAAAATCAAGCA CGAGAAAGGAGAGGCATTGCCTTGGATGGGAAAATCAAGCA < 41bp 0.544774582511178 0.775828789037884 0.110926 0.14357775 prediction 0.462108413053413 Functional Gain - SAG ENSG00000130561 CDS Human protein_coding chr2:234243695 chr2:234243696 synonymous SNV . 0 22 hm5C_associated_SNPs_114769 0 0 0 0 2 SAG chr2:234243745 5'GT 234243745 Upstream 50bp
chr1 158325684 158325684 1 + T C LUAD 158325682 + 158325662 158325702 41 GCCGTCTGCAGCTTGTGTGCCATGTCTCAGGATTCTACCCA GCCGTCTGCAGCTTGTGTGCCACGTCTCAGGATTCTACCCA < 41bp 0.504920874566582 0.735969039776036 0.031028152 0.014048427 prediction 0.462096330418909 Functional Gain - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325682 chr1:158325684 synonymous SNV . 0 23 hm5C_associated_SNPs_114772 0 0 0 1 1 CD1E chr1:158325730 5'GT 158325730 Upstream 47bp
chr1 109268385 109268385 1 + C G rs141658801 109268384 + 109268364 109268404 41 TTTCCTAGTTGCTTGTGCACCCGGAAGAGTGACGATCCAAG TTTCCTAGTTGCTTGTGCACCGGGAAGAGTGACGATCCAAG < 41bp 0.644488836657482 0.875535427747396 0.12573436 0.3366387 prediction 0.462093182179829 Functional Gain - FNDC7 ENSG00000143107 CDS Human protein_coding chr1:109268384 chr1:109268385 synonymous SNV . 0 22 hm5C_associated_SNPs_114775 0 0 0 0 1 FNDC7 chr1:109268372 3'AG 109268372 Downstream 14bp
chr16 2138096 2138096 1 + C T rs45517391 2138095 + 2138075 2138115 41 GTGGCCAAGATCGTGTCTGACCGCAACCTGCCCTTCGTGGC GTGGCCAAGATCGTGTCTGACTGCAACCTGCCCTTCGTGGC < 41bp 0.567471290689668 0.798516040236815 0.4268992 0.32429484 prediction 0.462089499094294 Functional Gain - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2138095 chr16:2138096 nonsynonymous SNV 0.879 3 22 hm5C_associated_SNPs_114777 3 0 1 0 2 TSC2 chr16:2138049 3'AG 2138049 Downstream 48bp
chr16 2138096 2138096 1 + C T rs45517391 2138095 + 2138075 2138115 41 GTGGCCAAGATCGTGTCTGACCGCAACCTGCCCTTCGTGGC GTGGCCAAGATCGTGTCTGACTGCAACCTGCCCTTCGTGGC < 41bp 0.567471290689668 0.798516040236815 0.4268992 0.32429484 prediction 0.462089499094294 Functional Gain - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2138095 chr16:2138096 nonsynonymous SNV 0.879 3 22 hm5C_associated_SNPs_114777 3 0 1 0 2 TSC2 chr16:2138140 5'GT 2138140 Upstream 45bp
chr6 43010844 43010844 1 + T C STAD 43010842 + 43010822 43010862 41 ACCACGGCCCGCCAACAGCGCGTCAGGTTTCTCATGATGCT ACCACGGCCCGCCAACAGCGCGCCAGGTTTCTCATGATGCT < 41bp 0.468915769390216 0.731034044815037 0.15702838 0.23045868 prediction 0.462068089630075 Functional Gain - CUL7 ENSG00000044090 CDS Human protein_coding chr6:43010842 chr6:43010844 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_114779 0 0 0 0 1 CUL7 chr6:43010796 3'AG 43010796 Downstream 49bp
chr20 56138761 56138761 1 + C T SKCM 56138760 + 56138740 56138780 41 GTGCGTCGGGGATGACATTGCCTGGATGAAGTTTGACGCAC GTGCGTCGGGGATGACATTGCTTGGATGAAGTTTGACGCAC < 41bp 0.522058260353885 0.753091611829145 0.697449 0.615475 prediction 0.46206670295052 Functional Gain - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56138760 chr20:56138761 synonymous SNV . 0 22 hm5C_associated_SNPs_114780 0 0 1 0 1 PCK1 chr20:56138783 5'GT 56138783 Upstream 23bp
chr20 21321450 21321450 1 + C T UCEC 21321449 + 21321429 21321469 41 GTTCTCAAGTAGCCAGTAATCCGAGACAAGCAGCCTATGAA GTTCTCAAGTAGCCAGTAATCTGAGACAAGCAGCCTATGAA < 41bp 0.546993218130454 0.778025427427918 0.9328929 0.788484 prediction 0.462064418594929 Functional Gain - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21321449 chr20:21321450 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_114781 0 0 1 0 2 XRN2 chr20:21321359 3'AG 21321359 Downstream 92bp
chr20 21321450 21321450 1 + C T UCEC 21321449 + 21321429 21321469 41 GTTCTCAAGTAGCCAGTAATCCGAGACAAGCAGCCTATGAA GTTCTCAAGTAGCCAGTAATCTGAGACAAGCAGCCTATGAA < 41bp 0.546993218130454 0.778025427427918 0.9328929 0.788484 prediction 0.462064418594929 Functional Gain - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21321449 chr20:21321450 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_114781 0 0 1 0 2 XRN2 chr20:21321490 5'GT 21321490 Upstream 41bp
chr9 35675784 35675784 1 + C T UCEC 35675783 + 35675763 35675803 41 CCGCCCTGGCCCCGGGTGTCCCCAGCCTGCGCGGGCCGCTT CCGCCCTGGCCCCGGGTGTCCTCAGCCTGCGCGGGCCGCTT < 41bp 0.542851287338592 0.773879689160869 0.3613811 0.33275104 prediction 0.462056803644554 Functional Gain - CA9 ENSG00000107159 CDS Human protein_coding chr9:35675783 chr9:35675784 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_114784 0 0 1 0 1 CA9 chr9:35675758 3'AG 35675758 Downstream 27bp
chr11 61544331 61544331 1 + A G UCEC 61544328 + 61544308 61544348 41 TACACGCTGGCCGCCCAGATCTCAGAGCGCATCATTGTGCG TACACGCTGGCCGCCCAGATCTCGGAGCGCATCATTGTGCG < 41bp 0.543399154513694 0.774424915899906 0.26519668 0.909961 prediction 0.462051522772424 Functional Gain - MYRF ENSG00000124920 CDS Human protein_coding chr11:61544328 chr11:61544331 synonymous SNV . 0 24 hm5C_associated_SNPs_114785 0 0 0 0 2 MYRF chr11:61544259 3'AG 61544259 Downstream 73bp
chr11 61544331 61544331 1 + A G UCEC 61544328 + 61544308 61544348 41 TACACGCTGGCCGCCCAGATCTCAGAGCGCATCATTGTGCG TACACGCTGGCCGCCCAGATCTCGGAGCGCATCATTGTGCG < 41bp 0.543399154513694 0.774424915899906 0.26519668 0.909961 prediction 0.462051522772424 Functional Gain - MYRF ENSG00000124920 CDS Human protein_coding chr11:61544328 chr11:61544331 synonymous SNV . 0 24 hm5C_associated_SNPs_114785 0 0 0 0 2 MYRF chr11:61544349 5'GT 61544349 Upstream 19bp
chr3 12623672 12623672 1 + C A SKCM 12623671 + 12623651 12623691 41 AACCGAGAAAGCCGGCATGTCCCCAACAATGAAGATGTCGA AACCGAGAAAGCCGGCATGTCACCAACAATGAAGATGTCGA < 41bp 0.551804497389434 0.782825113726924 0.020456374 0.109288305 prediction 0.46204123267498 Functional Gain - MKRN2 ENSG00000075975 CDS Human protein_coding chr3:12623671 chr3:12623672 nonsynonymous SNV 0.403 0 22 hm5C_associated_SNPs_114788 0 0 1 0 1 MKRN2 chr3:12623615 3'AG 12623615 Downstream 58bp
chr17 37817337 37817337 1 + C A COAD 37817336 + 37817316 37817356 41 CCCCCGACGCACAAATATGTCCGGTGAGCCTCACTTTGCCT CCCCCGACGCACAAATATGTCAGGTGAGCCTCACTTTGCCT < 41bp 0.591025302610743 0.822042498124251 0.39866194 0.9076661 prediction 0.462034391027015 Functional Gain - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37817336 chr17:37817337 synonymous SNV . 0 22 hm5C_associated_SNPs_114790 0 0 0 0 1 STARD3 chr17:37817338 5'GT 37817338 Upstream 2bp
chr3 148601559 148601559 1 + C T SKCM 148601558 + 148601538 148601578 41 ACTCCCAGATGCTATTGTTTCCCTATGGATATACATCAAAA ACTCCCAGATGCTATTGTTTCTCTATGGATATACATCAAAA < 41bp 0.458533766975462 0.731009633571641 0.05204937 0.9453319 prediction 0.462019267143282 Functional Gain - CPA3 ENSG00000163751 CDS Human protein_coding chr3:148601558 chr3:148601559 nonsynonymous SNV 0.987 4 22 hm5C_associated_SNPs_114794 0 0 0 0 1 CPA3 chr3:148601602 5'GT 148601602 Upstream 44bp
chr11 32611144 32611144 1 + C A UCEC 32611140 + 32611120 32611160 41 CTCACCACTGAAAAAAAGCACACCCTTTTAAGACTACTTTA CTCACCACTGAAAAAAAGCACACCATTTTAAGACTACTTTA < 41bp 0.30462993475707 0.731009017129228 0.012978822 0.098259 prediction 0.462018034258455 Functional Gain - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32611140 chr11:32611144 nonsynonymous SNV 0.712 0 25 hm5C_associated_SNPs_114795 0 0 1 0 2 EIF3M chr11:32611093 3'AG 32611093 Downstream 52bp
chr11 32611144 32611144 1 + C A UCEC 32611140 + 32611120 32611160 41 CTCACCACTGAAAAAAAGCACACCCTTTTAAGACTACTTTA CTCACCACTGAAAAAAAGCACACCATTTTAAGACTACTTTA < 41bp 0.30462993475707 0.731009017129228 0.012978822 0.098259 prediction 0.462018034258455 Functional Gain - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32611140 chr11:32611144 nonsynonymous SNV 0.712 0 25 hm5C_associated_SNPs_114795 0 0 1 0 2 EIF3M chr11:32611187 5'GT 32611187 Upstream 44bp
chr2 106690470 106690470 1 + C A rs141624732 106690466 + 106690446 106690486 41 CCCGAGGTGCAGCAGTGGTACCAGCAGTTTCTCTACATGGG CCCGAGGTGCAGCAGTGGTACCAGAAGTTTCTCTACATGGG < 41bp 0.31655239152057 0.731001655226081 0.04182604 0.12476781 prediction 0.462003310452161 Functional Gain - C2orf40 ENSG00000119147 CDS Human protein_coding chr2:106690466 chr2:106690470 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_114797 0 0 0 0 1 C2orf40 chr2:106690499 5'GT 106690499 Upstream 30bp
chr1 70896052 70896052 1 + T C UCEC 70896050 + 70896030 70896070 41 CTGTTAATTGTGAAAGCCTTCATAATAGACTTCGTTTCTTG CTGTTAATTGTGAAAGCCTTCACAATAGACTTCGTTTCTTG < 41bp 0.43862632008813 0.730995771872176 0.08415848 0.10140291 prediction 0.461991543744353 Functional Gain - CTH ENSG00000116761 CDS Human protein_coding chr1:70896050 chr1:70896052 synonymous SNV . 0 23 hm5C_associated_SNPs_114798 0 0 1 0 2 CTH chr1:70896000 3'AG 70896000 Downstream 53bp
chr1 70896052 70896052 1 + T C UCEC 70896050 + 70896030 70896070 41 CTGTTAATTGTGAAAGCCTTCATAATAGACTTCGTTTCTTG CTGTTAATTGTGAAAGCCTTCACAATAGACTTCGTTTCTTG < 41bp 0.43862632008813 0.730995771872176 0.08415848 0.10140291 prediction 0.461991543744353 Functional Gain - CTH ENSG00000116761 CDS Human protein_coding chr1:70896050 chr1:70896052 synonymous SNV . 0 23 hm5C_associated_SNPs_114798 0 0 1 0 2 CTH chr1:70896077 5'GT 70896077 Upstream 26bp
chr7 141443746 141443746 1 + C T UCEC 141443745 + 141443725 141443765 41 TGGCACAGAATATCAGTATTCCGGCCAGGCCTCAGAGACGT TGGCACAGAATATCAGTATTCTGGCCAGGCCTCAGAGACGT < 41bp 0.487234020784736 0.730984633341971 0.1538913 0.06962234 prediction 0.461969266683942 Functional Gain - SSBP1 ENSG00000106028 CDS Human protein_coding chr7:141443745 chr7:141443746 nonsynonymous SNV 0.963 3 22 hm5C_associated_SNPs_114805 0 0 1 0 2 SSBP1 chr7:141443702 3'AG 141443702 Downstream 45bp
chr7 141443746 141443746 1 + C T UCEC 141443745 + 141443725 141443765 41 TGGCACAGAATATCAGTATTCCGGCCAGGCCTCAGAGACGT TGGCACAGAATATCAGTATTCTGGCCAGGCCTCAGAGACGT < 41bp 0.487234020784736 0.730984633341971 0.1538913 0.06962234 prediction 0.461969266683942 Functional Gain - SSBP1 ENSG00000106028 CDS Human protein_coding chr7:141443745 chr7:141443746 nonsynonymous SNV 0.963 3 22 hm5C_associated_SNPs_114805 0 0 1 0 2 SSBP1 chr7:141443789 5'GT 141443789 Upstream 44bp
chr8 11637454 11637454 1 + C A KIRC 11637453 + 11637433 11637473 41 GGGGGACTGGAGGGACCCTTCCCCGAGGTAATGGTGTGGCC GGGGGACTGGAGGGACCCTTCACCGAGGTAATGGTGTGGCC < 41bp 0.567434973162164 0.798419148885656 0.20086908 0.3337332 prediction 0.461968351446985 Functional Gain - NEIL2 ENSG00000154328 CDS Human protein_coding chr8:11637453 chr8:11637454 synonymous SNV . 0 22 hm5C_associated_SNPs_114806 0 0 0 0 1 NEIL2 chr8:11637459 5'GT 11637459 Upstream 6bp
chr11 18154223 18154223 1 + T G rs1975777 18154221 + 18154201 18154241 41 CCTCTGAAGTCACTGAATCCCATAAAGGCTCTCTACCTTTA CCTCTGAAGTCACTGAATCCCAGAAAGGCTCTCTACCTTTA < 41bp 0.455582585573735 0.73098361742916 0.06966436 0.20918268 prediction 0.461967234858319 Functional Gain - MRGPRX3 ENSG00000179826 UTR5 Human protein_coding chr11:18154221 chr11:18154223 . . 0 23 hm5C_associated_SNPs_114807 0 0 0 0 1 MRGPRX3 chr11:18154161 3'AG 18154161 Downstream 63bp
chr1 170695536 170695536 1 + C G HNSC 170695535 + 170695515 170695555 41 TCTCCTGGGGGACAGCGTCTCCGTACAGGTGAATGACTGGC TCTCCTGGGGGACAGCGTCTCGGTACAGGTGAATGACTGGC < 41bp 0.418913982203774 0.730971606555262 0.24279788 0.71218157 prediction 0.461943213110525 Functional Gain - PRRX1 ENSG00000116132 CDS Human protein_coding chr1:170695535 chr1:170695536 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_114809 0 0 0 0 1 PRRX1 chr1:170695542 5'GT 170695542 Upstream 7bp
chr8 11640782 11640782 1 + C T SKCM 11640781 + 11640761 11640801 41 CAGTTGTCTTGGAGCTCTTCCCCAGTGGTCACACCCACCTG CAGTTGTCTTGGAGCTCTTCCTCAGTGGTCACACCCACCTG < 41bp 0.469739311837263 0.730969844609976 0.25771388 0.117824286 prediction 0.461939689219953 Functional Gain - NEIL2 ENSG00000154328 CDS Human protein_coding chr8:11640781 chr8:11640782 nonsynonymous SNV 0.068 1 22 hm5C_associated_SNPs_114810 0 0 1 0 1 NEIL2 chr8:11640712 3'AG 11640712 Downstream 71bp
chr5 138266183 138266183 1 + C T GBM 138266182 + 138266162 138266202 41 GCGATCATGGCTCAGCTTCCCCAGGAGCAAAAAGCGAAGAT GCGATCATGGCTCAGCTTCCCTAGGAGCAAAAAGCGAAGAT < 41bp 0.540820785053184 0.771788854148458 0.21121696 0.12023467 prediction 0.461936138190548 Functional Gain - CTNNA1 ENSG00000044115 CDS Human protein_coding chr5:138266182 chr5:138266183 stopgain 1.000 1 22 hm5C_associated_SNPs_114813 0 0 1 0 1 CTNNA1 chr5:138266162 3'AG 138266162 Downstream 22bp
chr4 100543870 100543870 1 + C A SARC 100543866 + 100543846 100543886 41 AAAGTACGAAAGGCTGTCCACAGGCAGAGGTTATGTCTCTC AAAGTACGAAAGGCTGTCCACAGGAAGAGGTTATGTCTCTC < 41bp 0.33665437678024 0.730950489759548 0.27833098 0.6137096 prediction 0.461900979519095 Functional Gain - MTTP ENSG00000138823 CDS Human protein_coding chr4:100543866 chr4:100543870 synonymous SNV . 0 25 hm5C_associated_SNPs_114815 0 0 1 0 1 MTTP chr4:100543834 3'AG 100543834 Downstream 37bp
chr22 37319379 37319379 1 + T C HNSC 37319377 + 37319357 37319397 41 ACCCAGGATGCCCAGCGGCTCGTCAACGTGACCCTCATTCG ACCCAGGATGCCCAGCGGCTCGCCAACGTGACCCTCATTCG < 41bp 0.590571284469741 0.821513759491586 0.059282392 0.07384825 prediction 0.461884950043689 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37319377 chr22:37319379 nonsynonymous SNV 0.050 1 23 hm5C_associated_SNPs_114819 0 0 0 0 2 CSF2RB chr22:37319286 3'AG 37319286 Downstream 94bp
chr22 37319379 37319379 1 + T C HNSC 37319377 + 37319357 37319397 41 ACCCAGGATGCCCAGCGGCTCGTCAACGTGACCCTCATTCG ACCCAGGATGCCCAGCGGCTCGCCAACGTGACCCTCATTCG < 41bp 0.590571284469741 0.821513759491586 0.059282392 0.07384825 prediction 0.461884950043689 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37319377 chr22:37319379 nonsynonymous SNV 0.050 1 23 hm5C_associated_SNPs_114819 0 0 0 0 2 CSF2RB chr22:37319409 5'GT 37319409 Upstream 31bp
chr19 44610560 44610560 1 + C A SKCM 44610559 + 44610539 44610579 41 ATTCTGATAGGAGACAAGATCCAAACTGAGATGGAGACTGT ATTCTGATAGGAGACAAGATCAAAACTGAGATGGAGACTGT < 41bp 0.551885638923773 0.782827008143074 0.13629872 0.3331715 prediction 0.461882738438602 Functional Gain - ZNF224 ENSG00000267680 CDS Human protein_coding chr19:44610559 chr19:44610560 nonsynonymous SNV 0.007 0 22 hm5C_associated_SNPs_114820 0 0 1 0 1 ZNF224 chr19:44610549 3'AG 44610549 Downstream 12bp
chr17 41323275 41323275 1 + C G rs115515064 41323271 + 41323251 41323291 41 GCGGCAGAGCCGGTAGCGGACGGTCCTTGCATTGGCCTCCG GCGGCAGAGCCGGTAGCGGACGGTGCTTGCATTGGCCTCCG < 41bp 0.424390755542199 0.730940241897007 0.26848567 0.6525743 prediction 0.461880483794014 Functional Gain - NBR1 ENSG00000188554 UTR5 Human protein_coding chr17:41323271 chr17:41323275 . . 0 25 hm5C_associated_SNPs_114821 0 0 1 0 1 NBR1 chr17:41323319 5'GT 41323319 Upstream 45bp
chr17 34913008 34913008 1 + T A UCEC 34913004 + 34912984 34913024 41 TCCTGAGTGCACTTTCTCAGCTTGTCCCATGTGTTGGTTGT TCCTGAGTGCACTTTCTCAGCTTGACCCATGTGTTGGTTGT < 41bp 0.392743373399851 0.730934477074252 0.1693151 0.08256936 prediction 0.461868954148504 Functional Gain - GGNBP2 ENSG00000005955 CDS Human other chr17:34913004 chr17:34913008 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_114822 0 0 1 0 1 GGNBP2 chr17:34912923 3'AG 34912923 Downstream 86bp
chr2 233394759 233394759 1 + C T LUSC 233394758 + 233394738 233394778 41 ACCTTCTACCTCATCATCCGCCGCAAGCCCCTCTTCTACAT ACCTTCTACCTCATCATCCGCTGCAAGCCCCTCTTCTACAT < 41bp 0.459198961125332 0.730929716008323 0.01697293 0.010247022 prediction 0.461859432016645 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233394758 chr2:233394759 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_114824 0 0 0 0 1 CHRND chr2:233394849 5'GT 233394849 Upstream 91bp
chr19 16910772 16910772 1 + C A COAD 16910771 + 16910751 16910791 41 GCCCCCGTGAGCCTGCTGGCCCGCGGCGGGGCTTTGGTGGC GCCCCCGTGAGCCTGCTGGCCAGCGGCGGGGCTTTGGTGGC < 41bp 0.466378102171617 0.730928107121541 0.29300642 0.85883665 prediction 0.461856214243081 Functional Gain - NWD1 ENSG00000188039 CDS Human protein_coding chr19:16910771 chr19:16910772 nonsynonymous SNV 0.012 0 22 hm5C_associated_SNPs_114825 0 0 0 0 1 NWD1 chr19:16910697 3'AG 16910697 Downstream 76bp
chr1 3638665 3638665 1 + C T SKCM 3638664 + 3638644 3638684 41 CAAGGTGTCCACCCCGCCACCCCCAGGCACCGCCATCCGGG CAAGGTGTCCACCCCGCCACCTCCAGGCACCGCCATCCGGG < 41bp 0.579141686027047 0.810049034026499 0.024193287 0.9604361 prediction 0.461814695998905 Functional Gain - TP73 ENSG00000078900 CDS Human protein_coding chr1:3638664 chr1:3638665 synonymous SNV . 0 22 hm5C_associated_SNPs_114829 0 0 0 0 1 TP73 chr1:3638585 3'AG 3638585 Downstream 81bp
chr19 51363282 51363282 1 + T C HNSC 51363280 + 51363260 51363300 41 TGTGCTTCAAGGTATCACGTCATGGGGCAGTGAACCATGTG TGTGCTTCAAGGTATCACGTCACGGGGCAGTGAACCATGTG < 41bp 0.553526232456023 0.784429486303907 0.5232824 0.48152187 prediction 0.461806507695768 Functional Gain - KLK3 ENSG00000142515 CDS Human protein_coding chr19:51363280 chr19:51363282 nonsynonymous SNV 0.041 2 23 hm5C_associated_SNPs_114831 0 0 0 0 1 KLK3 chr19:51363228 3'AG 51363228 Downstream 55bp
chr5 52360928 52360928 1 + C T COAD 52360927 + 52360907 52360947 41 AATGGTCATCAGGGCACTATCCGCACAAAGTATTCCCAGGT AATGGTCATCAGGGCACTATCTGCACAAAGTATTCCCAGGT < 41bp 0.554735603936577 0.785638795498769 0.35407388 0.22049308 prediction 0.461806383124385 Functional Gain - ITGA2 ENSG00000164171 CDS Human protein_coding chr5:52360927 chr5:52360928 nonsynonymous SNV 0.841 3 22 hm5C_associated_SNPs_114832 1 0 1 0 1 ITGA2 chr5:52360945 5'GT 52360945 Upstream 18bp
chr12 57859007 57859007 1 + C G rs542007910 57859006 + 57858986 57859026 41 GGGGTGGGATGATCCCACATCCTCAGTCCCGGGGACCCTTC GGGGTGGGATGATCCCACATCGTCAGTCCCGGGGACCCTTC < 41bp 0.407049939324566 0.730902105789602 0.08675301 0.41765773 prediction 0.461804211579204 Functional Gain - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57859006 chr12:57859007 nonsynonymous SNV 0.892 1 22 hm5C_associated_SNPs_114833 0 0 0 0 1 GLI1 chr12:57859038 5'GT 57859038 Upstream 32bp
chr2 234079218 234079218 1 + A G LUSC 234079215 + 234079195 234079235 41 GTCCCACGACCAGCTGCTCACAGAGAGGAGGGAGCAGAAGG GTCCCACGACCAGCTGCTCACAGGGAGGAGGGAGCAGAAGG < 41bp 0.542664127598078 0.773563831357138 0.92219585 0.9314307 prediction 0.46179940751812 Functional Gain - INPP5D ENSG00000168918 CDS Human protein_coding chr2:234079215 chr2:234079218 nonsynonymous SNV 0.516 3 24 hm5C_associated_SNPs_114834 0 0 1 0 2 INPP5D chr2:234079142 3'AG 234079142 Downstream 77bp
chr2 234079218 234079218 1 + A G LUSC 234079215 + 234079195 234079235 41 GTCCCACGACCAGCTGCTCACAGAGAGGAGGGAGCAGAAGG GTCCCACGACCAGCTGCTCACAGGGAGGAGGGAGCAGAAGG < 41bp 0.542664127598078 0.773563831357138 0.92219585 0.9314307 prediction 0.46179940751812 Functional Gain - INPP5D ENSG00000168918 CDS Human protein_coding chr2:234079215 chr2:234079218 nonsynonymous SNV 0.516 3 24 hm5C_associated_SNPs_114834 0 0 1 0 2 INPP5D chr2:234079250 5'GT 234079250 Upstream 33bp
chr19 44605324 44605324 1 + A G rs118149610 44605321 + 44605301 44605341 41 ACAGGGATACTTTCCACTTCCTAAGGGAAGAAAAGATTTGG ACAGGGATACTTTCCACTTCCTAGGGGAAGAAAAGATTTGG < 41bp 0.495622025666467 0.730898769497555 0.09094617 0.22142094 prediction 0.46179753899511 Functional Gain - ZNF224 ENSG00000267680 CDS Human protein_coding chr19:44605321 chr19:44605324 nonsynonymous SNV 0.040 1 24 hm5C_associated_SNPs_114835 0 0 1 0 2 ZNF224 chr19:44605286 3'AG 44605286 Downstream 39bp
chr19 44605324 44605324 1 + A G rs118149610 44605321 + 44605301 44605341 41 ACAGGGATACTTTCCACTTCCTAAGGGAAGAAAAGATTTGG ACAGGGATACTTTCCACTTCCTAGGGGAAGAAAAGATTTGG < 41bp 0.495622025666467 0.730898769497555 0.09094617 0.22142094 prediction 0.46179753899511 Functional Gain - ZNF224 ENSG00000267680 CDS Human protein_coding chr19:44605321 chr19:44605324 nonsynonymous SNV 0.040 1 24 hm5C_associated_SNPs_114835 0 0 1 0 2 ZNF224 chr19:44605378 5'GT 44605378 Upstream 55bp
chr17 42825784 42825784 1 + C T LUAD 42825783 + 42825763 42825803 41 CCCCCATCAGCCCTCCCATCCCAGGGCAGCATCTCCCAGGA CCCCCATCAGCCCTCCCATCCTAGGGCAGCATCTCCCAGGA < 41bp 0.533163102369408 0.76405441489526 0.8549292 0.353469 prediction 0.461782625051703 Functional Gain - DBF4B ENSG00000161692 CDS Human protein_coding chr17:42825783 chr17:42825784 synonymous SNV . 0 22 hm5C_associated_SNPs_114838 0 0 1 0 2 DBF4B chr17:42825709 3'AG 42825709 Downstream 76bp
chr17 42825784 42825784 1 + C T LUAD 42825783 + 42825763 42825803 41 CCCCCATCAGCCCTCCCATCCCAGGGCAGCATCTCCCAGGA CCCCCATCAGCCCTCCCATCCTAGGGCAGCATCTCCCAGGA < 41bp 0.533163102369408 0.76405441489526 0.8549292 0.353469 prediction 0.461782625051703 Functional Gain - DBF4B ENSG00000161692 CDS Human protein_coding chr17:42825783 chr17:42825784 synonymous SNV . 0 22 hm5C_associated_SNPs_114838 0 0 1 0 2 DBF4B chr17:42825833 5'GT 42825833 Upstream 50bp
chr6 72943496 72943496 1 + T A COAD 72943492 + 72943472 72943512 41 ACAGGTGATTTGGATTATTACTGGTTGGATCCTGCCACGTG ACAGGTGATTTGGATTATTACTGGATGGATCCTGCCACGTG < 41bp 0.461939686536147 0.73088337106132 0.36894578 0.7791335 prediction 0.46176674212264 Functional Gain - RIMS1 ENSG00000079841 CDS Human protein_coding chr6:72943492 chr6:72943496 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_114840 0 0 0 0 2 RIMS1 chr6:72943476 3'AG 72943476 Downstream 21bp
chr6 72943496 72943496 1 + T A COAD 72943492 + 72943472 72943512 41 ACAGGTGATTTGGATTATTACTGGTTGGATCCTGCCACGTG ACAGGTGATTTGGATTATTACTGGATGGATCCTGCCACGTG < 41bp 0.461939686536147 0.73088337106132 0.36894578 0.7791335 prediction 0.46176674212264 Functional Gain - RIMS1 ENSG00000079841 CDS Human protein_coding chr6:72943492 chr6:72943496 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_114840 0 0 0 0 2 RIMS1 chr6:72943543 5'GT 72943543 Upstream 48bp
chr1 170689027 170689027 1 + C T UCEC 170689026 + 170689006 170689046 41 TGCCCGCCGGGTGAACCTCACCGAGGCGAGAGTGCAGGTAA TGCCCGCCGGGTGAACCTCACTGAGGCGAGAGTGCAGGTAA < 41bp 0.541200850200565 0.772073640619937 0.40663692 0.42317754 prediction 0.461745580838745 Functional Gain - PRRX1 ENSG00000116132 CDS Human protein_coding chr1:170689026 chr1:170689027 synonymous SNV . 0 22 hm5C_associated_SNPs_114842 0 0 0 0 1 PRRX1 chr1:170689042 5'GT 170689042 Upstream 16bp
chr9 91606110 91606110 1 + C G rs201570852 91606109 + 91606089 91606129 41 ATGAGGACAAGGTCTGGAGGCCGGCCTGGGAACAGGGGCCG ATGAGGACAAGGTCTGGAGGCGGGCCTGGGAACAGGGGCCG < 41bp 0.632817882892068 0.863689015132401 0.35046244 0.4460221 prediction 0.461742264480667 Functional Gain - C9orf47 ENSG00000186354 CDS Human protein_coding chr9:91606109 chr9:91606110 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_114843 0 0 0 0 1 C9orf47 chr9:91606156 5'GT 91606156 Upstream 47bp
chr11 64360351 64360351 1 + A G LIHC 64360348 + 64360328 64360368 41 TGCTGCGTGCGGCCCTGCCTCAGACAGGTGAGTACCCCCAG TGCTGCGTGCGGCCCTGCCTCAGGCAGGTGAGTACCCCCAG < 41bp 0.547121399699388 0.777989349877368 0.21404555 0.62820065 prediction 0.46173590035596 Functional Gain - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64360348 chr11:64360351 nonsynonymous SNV 0.586 3 24 hm5C_associated_SNPs_114844 0 0 0 0 1 SLC22A12 chr11:64360354 5'GT 64360354 Upstream 4bp
chr13 31495733 31495733 1 + C T rs6563571 31495732 + 31495712 31495752 41 GGCAGTGAAGAATTTCTTCCCCCCAGGAAATGAAGTGGTTA GGCAGTGAAGAATTTCTTCCCTCCAGGAAATGAAGTGGTTA < 41bp 0.469134643791369 0.730867589420697 0.081707686 0.9030435 prediction 0.461735178841394 Functional Gain - MEDAG ENSG00000102802 CDS Human protein_coding chr13:31495732 chr13:31495733 synonymous SNV . 0 22 hm5C_associated_SNPs_114845 0 0 0 0 1 MEDAG chr13:31495698 3'AG 31495698 Downstream 36bp
chr19 36268752 36268752 1 + C T STAD 36268751 + 36268731 36268771 41 CAGCTCCTCGAGGCCCCTTCCCGCGGCTGGCTGACTGCGCC CAGCTCCTCGAGGCCCCTTCCTGCGGCTGGCTGACTGCGCC < 41bp 0.521334914263433 0.75219126046607 0.93883413 0.9199915 prediction 0.461712692405274 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36268751 chr19:36268752 nonsynonymous SNV 0.987 3 22 hm5C_associated_SNPs_114848 0 0 1 0 2 ARHGAP33 chr19:36268726 3'AG 36268726 Downstream 27bp
chr19 36268752 36268752 1 + C T STAD 36268751 + 36268731 36268771 41 CAGCTCCTCGAGGCCCCTTCCCGCGGCTGGCTGACTGCGCC CAGCTCCTCGAGGCCCCTTCCTGCGGCTGGCTGACTGCGCC < 41bp 0.521334914263433 0.75219126046607 0.93883413 0.9199915 prediction 0.461712692405274 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36268751 chr19:36268752 nonsynonymous SNV 0.987 3 22 hm5C_associated_SNPs_114848 0 0 1 0 2 ARHGAP33 chr19:36268810 5'GT 36268810 Upstream 59bp
chr7 128587098 128587098 1 + C A UCEC 128587097 + 128587077 128587117 41 CTGCAGAGGATGTTGCCAAGCCTGAGCCTCACAGGTGGGGC CTGCAGAGGATGTTGCCAAGCATGAGCCTCACAGGTGGGGC < 41bp 0.541226024990629 0.772080354828181 0.027968377 0.06516862 prediction 0.461708659675104 Functional Gain - IRF5 ENSG00000128604 CDS Human protein_coding chr7:128587097 chr7:128587098 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_114849 0 0 1 0 2 IRF5 chr7:128587077 3'AG 128587077 Downstream 22bp
chr7 128587098 128587098 1 + C A UCEC 128587097 + 128587077 128587117 41 CTGCAGAGGATGTTGCCAAGCCTGAGCCTCACAGGTGGGGC CTGCAGAGGATGTTGCCAAGCATGAGCCTCACAGGTGGGGC < 41bp 0.541226024990629 0.772080354828181 0.027968377 0.06516862 prediction 0.461708659675104 Functional Gain - IRF5 ENSG00000128604 CDS Human protein_coding chr7:128587097 chr7:128587098 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_114849 0 0 1 0 2 IRF5 chr7:128587110 5'GT 128587110 Upstream 13bp
chr14 65054966 65054966 1 + C T rs116953714 65054965 + 65054945 65054985 41 AGTAGACGTCAGATTCCCAGCCGAGATGCAAAAGCATGTGG AGTAGACGTCAGATTCCCAGCTGAGATGCAAAAGCATGTGG < 41bp 0.506419472383274 0.737264298030089 0.20031631 0.12686267 prediction 0.461689651293628 Functional Gain - PPP1R36 ENSG00000165807 CDS Human protein_coding chr14:65054965 chr14:65054966 synonymous SNV . 0 22 hm5C_associated_SNPs_114854 0 0 0 0 1 PPP1R36 chr14:65055013 5'GT 65055013 Upstream 48bp
chr11 89891357 89891357 1 + C T LUAD 89891356 + 89891336 89891376 41 GAAGAAGGAGTGGGAATCCCCCGAATACCTGTACATCCCAT GAAGAAGGAGTGGGAATCCCCTGAATACCTGTACATCCCAT < 41bp 0.511268115392308 0.742105772223713 0.08671835 0.05886987 prediction 0.46167531366281 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89891356 chr11:89891357 stopgain 0.977 0 22 hm5C_associated_SNPs_114856 0 0 0 0 2 NAALAD2 chr11:89891313 3'AG 89891313 Downstream 45bp
chr11 89891357 89891357 1 + C T LUAD 89891356 + 89891336 89891376 41 GAAGAAGGAGTGGGAATCCCCCGAATACCTGTACATCCCAT GAAGAAGGAGTGGGAATCCCCTGAATACCTGTACATCCCAT < 41bp 0.511268115392308 0.742105772223713 0.08671835 0.05886987 prediction 0.46167531366281 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89891356 chr11:89891357 stopgain 0.977 0 22 hm5C_associated_SNPs_114856 0 0 0 0 2 NAALAD2 chr11:89891406 5'GT 89891406 Upstream 50bp
chrX 47086801 47086801 1 + C T UCEC 47086800 + 47086780 47086820 41 TGAGGGTCGAAATCGGATCTCCGCAGAGGATGCCATGAAAC TGAGGGTCGAAATCGGATCTCTGCAGAGGATGCCATGAAAC < 41bp 0.580014867379569 0.810850625967126 0.25805867 0.1780048 prediction 0.461671517175112 Functional Gain - CDK16 ENSG00000102225 CDS Human protein_coding chrX:47086800 chrX:47086801 synonymous SNV . 0 22 hm5C_associated_SNPs_114858 0 0 1 0 2 CDK16 chrX:47086778 3'AG 47086778 Downstream 24bp
chrX 47086801 47086801 1 + C T UCEC 47086800 + 47086780 47086820 41 TGAGGGTCGAAATCGGATCTCCGCAGAGGATGCCATGAAAC TGAGGGTCGAAATCGGATCTCTGCAGAGGATGCCATGAAAC < 41bp 0.580014867379569 0.810850625967126 0.25805867 0.1780048 prediction 0.461671517175112 Functional Gain - CDK16 ENSG00000102225 CDS Human protein_coding chrX:47086800 chrX:47086801 synonymous SNV . 0 22 hm5C_associated_SNPs_114858 0 0 1 0 2 CDK16 chrX:47086868 5'GT 47086868 Upstream 68bp
chr9 26956433 26956433 1 + C A rs368296180 26956432 + 26956412 26956452 41 TTAGTGGGTAGGCCTGAGAGCCGAGGAAAACTGAGCGTGGG TTAGTGGGTAGGCCTGAGAGCAGAGGAAAACTGAGCGTGGG < 41bp 0.554668414879203 0.785498522817551 0.912778 0.9225167 prediction 0.461660215876695 Functional Gain - IFT74 ENSG00000096872 UTR5 Human protein_coding chr9:26956432 chr9:26956433 . . 0 22 hm5C_associated_SNPs_114861 0 0 1 0 1 IFT74 chr9:26956514 5'GT 26956514 Upstream 82bp
chr4 128608907 128608907 1 + C A rs35354253 128608903 + 128608883 128608923 41 TGTTCTTTCAAAGAGCACTTCAGCCTGCGAAACTGCATTCC TGTTCTTTCAAAGAGCACTTCAGCATGCGAAACTGCATTCC < 41bp 0.309022650800266 0.730827129300271 0.24895746 0.23312208 prediction 0.461654258600542 Functional Gain - INTU ENSG00000164066 CDS Human protein_coding chr4:128608903 chr4:128608907 nonsynonymous SNV 0.677 4 25 hm5C_associated_SNPs_114863 0 0 0 1 2 INTU chr4:128608833 3'AG 128608833 Downstream 75bp
chr4 128608907 128608907 1 + C A rs35354253 128608903 + 128608883 128608923 41 TGTTCTTTCAAAGAGCACTTCAGCCTGCGAAACTGCATTCC TGTTCTTTCAAAGAGCACTTCAGCATGCGAAACTGCATTCC < 41bp 0.309022650800266 0.730827129300271 0.24895746 0.23312208 prediction 0.461654258600542 Functional Gain - INTU ENSG00000164066 CDS Human protein_coding chr4:128608903 chr4:128608907 nonsynonymous SNV 0.677 4 25 hm5C_associated_SNPs_114863 0 0 0 1 2 INTU chr4:128608896 3'AG 128608896 Downstream 12bp
chr8 27358525 27358525 1 + C A LUSC 27358524 + 27358504 27358544 41 AAAGGAGAGATCACACTTTCCCAGGTGAGGGGACATCACCA AAAGGAGAGATCACACTTTCCAAGGTGAGGGGACATCACCA < 41bp 0.469506689327174 0.730817634760638 0.9053279 0.9048005 prediction 0.461635269521275 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27358524 chr8:27358525 nonsynonymous SNV 0.974 1 22 hm5C_associated_SNPs_114865 0 0 1 0 4 EPHX2;EPHX2 chr8:27358443 3'AG 27358443 Downstream 83bp
chr8 27358525 27358525 1 + C A LUSC 27358524 + 27358504 27358544 41 AAAGGAGAGATCACACTTTCCCAGGTGAGGGGACATCACCA AAAGGAGAGATCACACTTTCCAAGGTGAGGGGACATCACCA < 41bp 0.469506689327174 0.730817634760638 0.9053279 0.9048005 prediction 0.461635269521275 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27358524 chr8:27358525 nonsynonymous SNV 0.974 1 22 hm5C_associated_SNPs_114865 0 0 1 0 4 EPHX2 chr8:27358445 3'AG 27358445 Downstream 81bp
chr8 27358525 27358525 1 + C A LUSC 27358524 + 27358504 27358544 41 AAAGGAGAGATCACACTTTCCCAGGTGAGGGGACATCACCA AAAGGAGAGATCACACTTTCCAAGGTGAGGGGACATCACCA < 41bp 0.469506689327174 0.730817634760638 0.9053279 0.9048005 prediction 0.461635269521275 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27358524 chr8:27358525 nonsynonymous SNV 0.974 1 22 hm5C_associated_SNPs_114865 0 0 1 0 4 EPHX2 chr8:27358481 3'AG 27358481 Downstream 45bp
chr8 27358525 27358525 1 + C A LUSC 27358524 + 27358504 27358544 41 AAAGGAGAGATCACACTTTCCCAGGTGAGGGGACATCACCA AAAGGAGAGATCACACTTTCCAAGGTGAGGGGACATCACCA < 41bp 0.469506689327174 0.730817634760638 0.9053279 0.9048005 prediction 0.461635269521275 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27358524 chr8:27358525 nonsynonymous SNV 0.974 1 22 hm5C_associated_SNPs_114865 0 0 1 0 4 EPHX2 chr8:27358527 5'GT 27358527 Upstream 3bp
chr3 183774812 183774812 1 + T G UCEC 183774810 + 183774790 183774830 41 CAACAGAACTGTACCTTCACCTTCAGTTCTTTCCTCTACAC CAACAGAACTGTACCTTCACCTGCAGTTCTTTCCTCTACAC < 41bp 0.413642464674866 0.730817592977801 0.012407839 0.010759383 prediction 0.461635185955602 Functional Gain - HTR3C ENSG00000178084 CDS Human protein_coding chr3:183774810 chr3:183774812 nonsynonymous SNV 0.953 5 23 hm5C_associated_SNPs_114866 0 0 0 0 1 HTR3C chr3:183774832 5'GT 183774832 Upstream 21bp
chr1 28863279 28863279 1 + C T COAD 28863278 + 28863258 28863298 41 GGAAAAGCATACAGCCTGGGCCGGGCTGAGTATGGGCGGCT GGAAAAGCATACAGCCTGGGCTGGGCTGAGTATGGGCGGCT < 41bp 0.515142283269378 0.745946956371025 0.50807244 0.260943 prediction 0.461609346203294 Functional Gain - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28863278 chr1:28863279 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_114869 0 0 1 0 1 RCC1 chr1:28863259 3'AG 28863259 Downstream 21bp
chr17 76135285 76135285 1 + C T LUAD 76135284 + 76135264 76135304 41 CTCCCAGACCCAGGCCAATGCCAGGGCCATCCACAGGCTCC CTCCCAGACCCAGGCCAATGCTAGGGCCATCCACAGGCTCC < 41bp 0.538618069528461 0.769418923211896 0.8966485 0.81893426 prediction 0.461601707366871 Functional Gain - TMC8 ENSG00000167895 CDS Human protein_coding chr17:76135284 chr17:76135285 synonymous SNV . 0 22 hm5C_associated_SNPs_114872 0 0 1 0 2 TMC8 chr17:76135243 3'AG 76135243 Downstream 43bp
chr17 76135285 76135285 1 + C T LUAD 76135284 + 76135264 76135304 41 CTCCCAGACCCAGGCCAATGCCAGGGCCATCCACAGGCTCC CTCCCAGACCCAGGCCAATGCTAGGGCCATCCACAGGCTCC < 41bp 0.538618069528461 0.769418923211896 0.8966485 0.81893426 prediction 0.461601707366871 Functional Gain - TMC8 ENSG00000167895 CDS Human protein_coding chr17:76135284 chr17:76135285 synonymous SNV . 0 22 hm5C_associated_SNPs_114872 0 0 1 0 2 TMC8 chr17:76135321 5'GT 76135321 Upstream 37bp
chr11 134244581 134244581 1 + C A SKCM 134244577 + 134244557 134244597 41 GACCCCAGAAGACGCTTTACCTCCCAGGTCCCTGGTTGAGC GACCCCAGAAGACGCTTTACCTCCAAGGTCCCTGGTTGAGC < 41bp 0.288007514008643 0.730791109353761 0.14846489 0.9580556 prediction 0.461582218707522 Functional Gain - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134244577 chr11:134244581 nonsynonymous SNV 0.921 5 25 hm5C_associated_SNPs_114876 0 0 0 0 2 GLB1L2 chr11:134244496 3'AG 134244496 Downstream 86bp
chr11 134244581 134244581 1 + C A SKCM 134244577 + 134244557 134244597 41 GACCCCAGAAGACGCTTTACCTCCCAGGTCCCTGGTTGAGC GACCCCAGAAGACGCTTTACCTCCAAGGTCCCTGGTTGAGC < 41bp 0.288007514008643 0.730791109353761 0.14846489 0.9580556 prediction 0.461582218707522 Functional Gain - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134244577 chr11:134244581 nonsynonymous SNV 0.921 5 25 hm5C_associated_SNPs_114876 0 0 0 0 2 GLB1L2 chr11:134244612 5'GT 134244612 Upstream 32bp
chr12 129028531 129028531 1 + T C BRCA 129028529 + 129028509 129028549 41 GTGAAGAAGGGGGTGAACATCCTGAGTGCTCAGACCCGTGA GTGAAGAAGGGGGTGAACATCCCGAGTGCTCAGACCCGTGA < 41bp 0.597493354012838 0.828276088790193 0.3886619 0.7421751 prediction 0.461565469554709 Functional Gain - TMEM132C ENSG00000181234 CDS Human protein_coding chr12:129028529 chr12:129028531 nonsynonymous SNV 0.952 2 23 hm5C_associated_SNPs_114877 0 0 0 0 1 TMEM132C chr12:129028502 3'AG 129028502 Downstream 30bp
chr1 43803899 43803899 1 + C T rs61754776 43803898 + 43803878 43803918 41 ACCAGCTGCTGTATGCCTACCCGCGGTAGGTGCTGGACTGT ACCAGCTGCTGTATGCCTACCTGCGGTAGGTGCTGGACTGT < 41bp 0.523274762589969 0.754052751703012 0.37425476 0.30673042 prediction 0.461555978226086 Functional Gain - MPL ENSG00000117400 CDS Human protein_coding chr1:43803898 chr1:43803899 nonsynonymous SNV 0.956 0 22 hm5C_associated_SNPs_114879 1 0 0 0 1 MPL chr1:43803902 5'GT 43803902 Upstream 4bp
chr19 52085121 52085121 1 + A G UCEC 52085118 + 52085098 52085138 41 TGTGGAGGAGGCTGAAGTCTCACATCAGAGGTGTCAAGGTG TGTGGAGGAGGCTGAAGTCTCACGTCAGAGGTGTCAAGGTG < 41bp 0.543632425357475 0.774406748756988 0.08439684 0.19844458 prediction 0.461548646799025 Functional Gain - ZNF175 ENSG00000105497 CDS Human protein_coding chr19:52085118 chr19:52085121 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_114882 0 0 1 0 1 ZNF175 chr19:52085135 5'GT 52085135 Upstream 15bp
chr20 62373567 62373567 1 + C T LUSC 62373566 + 62373546 62373586 41 TCGGCGATGCAGAGACACATCCGCCTGGTGCACCTGGGGTG TCGGCGATGCAGAGACACATCTGCCTGGTGCACCTGGGGTG < 41bp 0.490154205296807 0.730772075711788 0.24036148 0.2675224 prediction 0.461544151423576 Functional Gain - SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62373566 chr20:62373567 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_114883 0 0 1 0 2 SLC2A4RG chr20:62373483 3'AG 62373483 Downstream 85bp
chr20 62373567 62373567 1 + C T LUSC 62373566 + 62373546 62373586 41 TCGGCGATGCAGAGACACATCCGCCTGGTGCACCTGGGGTG TCGGCGATGCAGAGACACATCTGCCTGGTGCACCTGGGGTG < 41bp 0.490154205296807 0.730772075711788 0.24036148 0.2675224 prediction 0.461544151423576 Functional Gain - SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62373566 chr20:62373567 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_114883 0 0 1 0 2 SLC2A4RG chr20:62373583 5'GT 62373583 Upstream 17bp
chr4 4864487 4864487 1 + A G LUSC 4864484 + 4864464 4864504 41 ACAAGACGAACCGTAAGCCGCGGACGCCCTTCACCACCGCG ACAAGACGAACCGTAAGCCGCGGGCGCCCTTCACCACCGCG < 41bp 0.485034896178723 0.730768839861513 0.89012885 0.90578604 prediction 0.461537679723026 Functional Gain - MSX1 ENSG00000163132 CDS Human protein_coding chr4:4864484 chr4:4864487 nonsynonymous SNV 0.984 5 24 hm5C_associated_SNPs_114886 0 0 0 0 1 MSX1 chr4:4864428 3'AG 4864428 Downstream 60bp
chr11 61252285 61252285 1 + A G UCEC 61252282 + 61252262 61252302 41 CCGCTGGAGCGGGAGAACTTCCGACATGTGAGTGGCAGCCC CCGCTGGAGCGGGAGAACTTCCGGCATGTGAGTGGCAGCCC < 41bp 0.481913890919767 0.730768123430902 0.32845914 0.8834312 prediction 0.461536246861803 Functional Gain - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61252282 chr11:61252285 synonymous SNV . 0 24 hm5C_associated_SNPs_114888 0 0 0 0 1 PPP1R32 chr11:61252288 5'GT 61252288 Upstream 4bp
chr6 158066823 158066823 1 + A G STAD 158066820 + 158066800 158066840 41 GTCTGGTCCATCGTTGGCCTCTCAGGATTCCACACCTACTT GTCTGGTCCATCGTTGGCCTCTCGGGATTCCACACCTACTT < 41bp 0.536124599146661 0.766890457613616 0.022186339 0.08754206 prediction 0.46153171693391 Functional Gain - ZDHHC14 ENSG00000175048 CDS Human protein_coding chr6:158066820 chr6:158066823 synonymous SNV . 0 24 hm5C_associated_SNPs_114889 0 0 1 0 1 ZDHHC14 chr6:158066871 5'GT 158066871 Upstream 49bp
chr15 58837951 58837951 1 + C T KICH 58837950 + 58837930 58837970 41 TTTCCCATTAGGGCTGGATGCCGCGGGACCTTTGTTTGAGG TTTCCCATTAGGGCTGGATGCTGCGGGACCTTTGTTTGAGG < 41bp 0.523272025344629 0.754033526577262 0.31891364 0.27899855 prediction 0.461523002465267 Functional Gain - LIPC ENSG00000166035 CDS Human protein_coding chr15:58837950 chr15:58837951 synonymous SNV . 0 22 hm5C_associated_SNPs_114891 0 0 1 0 1 LIPC chr15:58837941 3'AG 58837941 Downstream 11bp
chr21 15011855 15011855 1 + C A SARC 15011854 + 15011834 15011874 41 AGTGATGAACAAAATGATACCCGGAAACAACTTTCTGAAGA AGTGATGAACAAAATGATACCAGGAAACAACTTTCTGAAGA < 41bp 0.541500487611295 0.772252321346065 0.17728445 0.33034462 prediction 0.46150366746954 Functional Gain - POTED ENSG00000166351 CDS Human protein_coding chr21:15011854 chr21:15011855 synonymous SNV . 0 22 hm5C_associated_SNPs_114894 0 0 0 0 1 POTED chr21:15011836 3'AG 15011836 Downstream 20bp
chr6 10726154 10726154 1 + C T rs143847760 10726153 + 10726133 10726173 41 CCTCTAGGCAGCGTGCCGTCCCTGGCTGCAGGGCTGCTCTT CCTCTAGGCAGCGTGCCGTCCTTGGCTGCAGGGCTGCTCTT < 41bp 0.539949156041851 0.770699871707094 0.12750584 0.15798968 prediction 0.461501431330487 Functional Gain - TMEM14C ENSG00000111843 CDS Human protein_coding chr6:10726153 chr6:10726154 synonymous SNV . 0 22 hm5C_associated_SNPs_114895 0 0 1 0 2 TMEM14C chr6:10726140 3'AG 10726140 Downstream 15bp
chr6 10726154 10726154 1 + C T rs143847760 10726153 + 10726133 10726173 41 CCTCTAGGCAGCGTGCCGTCCCTGGCTGCAGGGCTGCTCTT CCTCTAGGCAGCGTGCCGTCCTTGGCTGCAGGGCTGCTCTT < 41bp 0.539949156041851 0.770699871707094 0.12750584 0.15798968 prediction 0.461501431330487 Functional Gain - TMEM14C ENSG00000111843 CDS Human protein_coding chr6:10726153 chr6:10726154 synonymous SNV . 0 22 hm5C_associated_SNPs_114895 0 0 1 0 2 TMEM14C chr6:10726241 5'GT 10726241 Upstream 88bp
chr21 45732045 45732045 1 + C A COAD 45732044 + 45732024 45732064 41 TTTACCACCAGGGAGGGGCGCCGGGCAGCGGCCTACAACCT TTTACCACCAGGGAGGGGCGCAGGGCAGCGGCCTACAACCT < 41bp 0.544613328143205 0.775357374256737 0.74199826 0.88723874 prediction 0.461488092227064 Functional Gain - PFKL ENSG00000141959 CDS Human protein_coding chr21:45732044 chr21:45732045 synonymous SNV . 0 22 hm5C_associated_SNPs_114897 0 0 1 0 1 PFKL chr21:45731988 3'AG 45731988 Downstream 58bp
chr3 32201112 32201112 1 + C T UCEC 32201111 + 32201091 32201131 41 ATGGGCAAAAGCTCCAAGGACCGCAGACTTCTGCTGAAGTG ATGGGCAAAAGCTCCAAGGACTGCAGACTTCTGCTGAAGTG < 41bp 0.576535247161315 0.807278988342794 0.27288142 0.3286753 prediction 0.461487482362958 Functional Gain - GPD1L ENSG00000152642 CDS Human protein_coding chr3:32201111 chr3:32201112 nonsynonymous SNV 0.895 3 22 hm5C_associated_SNPs_114898 0 0 1 0 2 GPD1L chr3:32201060 3'AG 32201060 Downstream 53bp
chr3 32201112 32201112 1 + C T UCEC 32201111 + 32201091 32201131 41 ATGGGCAAAAGCTCCAAGGACCGCAGACTTCTGCTGAAGTG ATGGGCAAAAGCTCCAAGGACTGCAGACTTCTGCTGAAGTG < 41bp 0.576535247161315 0.807278988342794 0.27288142 0.3286753 prediction 0.461487482362958 Functional Gain - GPD1L ENSG00000152642 CDS Human protein_coding chr3:32201111 chr3:32201112 nonsynonymous SNV 0.895 3 22 hm5C_associated_SNPs_114898 0 0 1 0 2 GPD1L chr3:32201166 5'GT 32201166 Upstream 55bp
chr12 56117725 56117725 1 + C T UCEC 56117724 + 56117704 56117744 41 ATCGTGGAGCCTGGCTTCTTCCGAACCCCTGTGACCAACCT ATCGTGGAGCCTGGCTTCTTCTGAACCCCTGTGACCAACCT < 41bp 0.506065822670477 0.736806783017108 0.3239987 0.19955832 prediction 0.461481920693263 Functional Gain - RDH5 ENSG00000135437 CDS Human protein_coding chr12:56117724 chr12:56117725 stopgain 0.998 0 22 hm5C_associated_SNPs_114900 0 0 1 0 1 RDH5 chr12:56117670 3'AG 56117670 Downstream 56bp
chr2 128350435 128350435 1 + C T UCEC 128350434 + 128350414 128350454 41 ATGATGGAGACCGTGCACATCCGCAAGTCGGGCTTCCCCAT ATGATGGAGACCGTGCACATCTGCAAGTCGGGCTTCCCCAT < 41bp 0.472501973523344 0.730740650792213 0.33722758 0.42386815 prediction 0.461481301584426 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128350434 chr2:128350435 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_114901 0 0 0 0 2 MYO7B chr2:128350369 3'AG 128350369 Downstream 67bp
chr2 128350435 128350435 1 + C T UCEC 128350434 + 128350414 128350454 41 ATGATGGAGACCGTGCACATCCGCAAGTCGGGCTTCCCCAT ATGATGGAGACCGTGCACATCTGCAAGTCGGGCTTCCCCAT < 41bp 0.472501973523344 0.730740650792213 0.33722758 0.42386815 prediction 0.461481301584426 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128350434 chr2:128350435 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_114901 0 0 0 0 2 MYO7B chr2:128350521 5'GT 128350521 Upstream 87bp
chr12 52699525 52699525 1 + C T rs139895699 52699524 + 52699504 52699544 41 GAGGAGATCAACGAGCTGAACCGCATGATCCAGAGGCTGAC GAGGAGATCAACGAGCTGAACTGCATGATCCAGAGGCTGAC < 41bp 0.585555862376151 0.816296022495836 0.30309862 0.23092043 prediction 0.461480320239371 Functional Gain - KRT86 ENSG00000170442 CDS Human protein_coding chr12:52699524 chr12:52699525 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_114902 0 0 0 0 1 KRT86 chr12:52699572 5'GT 52699572 Upstream 48bp
chr4 25677814 25677814 1 + C T SKCM 25677813 + 25677793 25677833 41 ATCTTGCTGTGGTACCCGATCCCGTTCACTCGCCTGCCCAT ATCTTGCTGTGGTACCCGATCTCGTTCACTCGCCTGCCCAT < 41bp 0.478308425819021 0.730731995335306 0.3670401 0.29527485 prediction 0.461463990670611 Functional Gain - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25677813 chr4:25677814 nonsynonymous SNV 0.971 4 22 hm5C_associated_SNPs_114907 0 0 0 0 1 SLC34A2 chr4:25677757 3'AG 25677757 Downstream 58bp
chr3 179304403 179304403 1 + T A COAD 179304399 + 179304379 179304419 41 AGGTTTAGCTCATGGATTGGCGGCTCCATTCTAGCCTCTTT AGGTTTAGCTCATGGATTGGCGGCACCATTCTAGCCTCTTT < 41bp 0.407697888909112 0.730719028242392 0.20292854 0.041852087 prediction 0.461438056484783 Functional Gain - ACTL6A ENSG00000136518 CDS Human protein_coding chr3:179304399 chr3:179304403 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_114912 0 0 1 0 1 ACTL6A chr3:179304420 5'GT 179304420 Upstream 18bp
chr1 156874635 156874635 1 + C A LUAD 156874634 + 156874614 156874654 41 GGGAGGGCCCCCATACTTGCCCCCAGCCCACGTGAGTGCTC GGGAGGGCCCCCATACTTGCCACCAGCCCACGTGAGTGCTC < 41bp 0.480988937033153 0.730709979744162 0.037977993 0.050649643 prediction 0.461419959488324 Functional Gain - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156874634 chr1:156874635 nonsynonymous SNV 0.376 1 22 hm5C_associated_SNPs_114914 0 0 0 0 2 PEAR1 chr1:156874540 3'AG 156874540 Downstream 96bp
chr1 156874635 156874635 1 + C A LUAD 156874634 + 156874614 156874654 41 GGGAGGGCCCCCATACTTGCCCCCAGCCCACGTGAGTGCTC GGGAGGGCCCCCATACTTGCCACCAGCCCACGTGAGTGCTC < 41bp 0.480988937033153 0.730709979744162 0.037977993 0.050649643 prediction 0.461419959488324 Functional Gain - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156874634 chr1:156874635 nonsynonymous SNV 0.376 1 22 hm5C_associated_SNPs_114914 0 0 0 0 2 PEAR1 chr1:156874644 5'GT 156874644 Upstream 10bp
chr11 66373037 66373037 1 + C T SKCM 66373036 + 66373016 66373056 41 CCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAACTCCG CCGGGGAGGCCATCCCTTATCTAAGATCACAGGGAACTCCG < 41bp 0.548481888268212 0.779181799407372 0.85749435 0.27265978 prediction 0.461399822278319 Functional Gain - CCS ENSG00000173992 CDS Human protein_coding chr11:66373036 chr11:66373037 synonymous SNV . 0 22 hm5C_associated_SNPs_114917 0 0 1 1 2 CCS chr11:66372960 3'AG 66372960 Downstream 78bp
chr11 66373037 66373037 1 + C T SKCM 66373036 + 66373016 66373056 41 CCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAACTCCG CCGGGGAGGCCATCCCTTATCTAAGATCACAGGGAACTCCG < 41bp 0.548481888268212 0.779181799407372 0.85749435 0.27265978 prediction 0.461399822278319 Functional Gain - CCS ENSG00000173992 CDS Human protein_coding chr11:66373036 chr11:66373037 synonymous SNV . 0 22 hm5C_associated_SNPs_114917 0 0 1 1 2 CCS chr11:66373063 5'GT 66373063 Upstream 27bp
chr22 39120355 39120355 1 + C T SKCM 39120354 + 39120334 39120374 41 TCACCAGGCTGCCGGAAGATCCCCGTGCTGGTGCAGAGCAA TCACCAGGCTGCCGGAAGATCTCCGTGCTGGTGCAGAGCAA < 41bp 0.454208349518545 0.730698376707235 0.3532066 0.7737945 prediction 0.46139675341447 Functional Gain - GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39120354 chr22:39120355 nonsynonymous SNV 0.736 4 22 hm5C_associated_SNPs_114918 0 0 1 0 2 GTPBP1 chr22:39120302 3'AG 39120302 Downstream 54bp
chr22 39120355 39120355 1 + C T SKCM 39120354 + 39120334 39120374 41 TCACCAGGCTGCCGGAAGATCCCCGTGCTGGTGCAGAGCAA TCACCAGGCTGCCGGAAGATCTCCGTGCTGGTGCAGAGCAA < 41bp 0.454208349518545 0.730698376707235 0.3532066 0.7737945 prediction 0.46139675341447 Functional Gain - GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39120354 chr22:39120355 nonsynonymous SNV 0.736 4 22 hm5C_associated_SNPs_114918 0 0 1 0 2 GTPBP1 chr22:39120416 5'GT 39120416 Upstream 62bp
chr16 24135243 24135243 1 + C T UCEC 24135242 + 24135222 24135262 41 GACAACAATGGCAACAGAGACCGGATGAAACTGACCGATTT GACAACAATGGCAACAGAGACTGGATGAAACTGACCGATTT < 41bp 0.481958292490969 0.730689509982868 0.8002846 0.29708314 prediction 0.461379019965736 Functional Gain - PRKCB ENSG00000166501 CDS Human protein_coding chr16:24135242 chr16:24135243 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_114920 0 0 1 0 2 PRKCB chr16:24135156 3'AG 24135156 Downstream 88bp
chr16 24135243 24135243 1 + C T UCEC 24135242 + 24135222 24135262 41 GACAACAATGGCAACAGAGACCGGATGAAACTGACCGATTT GACAACAATGGCAACAGAGACTGGATGAAACTGACCGATTT < 41bp 0.481958292490969 0.730689509982868 0.8002846 0.29708314 prediction 0.461379019965736 Functional Gain - PRKCB ENSG00000166501 CDS Human protein_coding chr16:24135242 chr16:24135243 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_114920 0 0 1 0 2 PRKCB chr16:24135302 5'GT 24135302 Upstream 60bp
chr22 18070064 18070064 1 + T C UCEC 18070062 + 18070042 18070082 41 AGGGGCCTGGGTGCCACTCTCCTCAGGTGAGCCTTTCTTCC AGGGGCCTGGGTGCCACTCTCCCCAGGTGAGCCTTTCTTCC < 41bp 0.590065457999431 0.820751238185575 0.08825794 0.24789122 prediction 0.461371560372287 Functional Gain - SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18070062 chr22:18070064 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_114923 0 0 0 0 1 SLC25A18 chr22:18070067 5'GT 18070067 Upstream 4bp
chr5 147593499 147593499 1 + C T SKCM 147593498 + 147593478 147593518 41 CTGTGGTGAGTTCCAGGACCCCAAGGTCTACTGCACTCGGG CTGTGGTGAGTTCCAGGACCCTAAGGTCTACTGCACTCGGG < 41bp 0.506718590722507 0.737395223050626 0.28854364 0.3671748 prediction 0.461353264656239 Functional Gain - SPINK6 ENSG00000178172 CDS Human protein_coding chr5:147593498 chr5:147593499 synonymous SNV . 0 22 hm5C_associated_SNPs_114930 0 0 1 0 1 SPINK6 chr5:147593473 3'AG 147593473 Downstream 27bp
chr9 35807341 35807341 1 + T G UCEC 35807339 + 35807319 35807359 41 CCTTTTAGGTAGTGACACTTCTTAATGACCTGTATACCTGC CCTTTTAGGTAGTGACACTTCTGAATGACCTGTATACCTGC < 41bp 0.397470460204126 0.730650009540635 0.022054762 0.06882325 prediction 0.46130001908127 Functional Gain - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35807339 chr9:35807341 synonymous SNV . 0 23 hm5C_associated_SNPs_114937 0 0 0 0 2 NPR2 chr9:35807327 3'AG 35807327 Downstream 15bp
chr9 35807341 35807341 1 + T G UCEC 35807339 + 35807319 35807359 41 CCTTTTAGGTAGTGACACTTCTTAATGACCTGTATACCTGC CCTTTTAGGTAGTGACACTTCTGAATGACCTGTATACCTGC < 41bp 0.397470460204126 0.730650009540635 0.022054762 0.06882325 prediction 0.46130001908127 Functional Gain - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35807339 chr9:35807341 synonymous SNV . 0 23 hm5C_associated_SNPs_114937 0 0 0 0 2 NPR2 chr9:35807395 5'GT 35807395 Upstream 55bp
chr16 49412420 49412420 1 + C T rs145444097 49412419 + 49412399 49412439 41 AGGAAGGACGCCGCCTCCTACCGAAGCCTCTATGGAGTGGA AGGAAGGACGCCGCCTCCTACTGAAGCCTCTATGGAGTGGA < 41bp 0.542163625975902 0.772808153439443 0.69884473 0.23388386 prediction 0.461289054927083 Functional Gain - C16orf78 ENSG00000166152 CDS Human protein_coding chr16:49412419 chr16:49412420 stopgain 0.004 0 22 hm5C_associated_SNPs_114938 0 0 0 0 2 C16orf78 chr16:49412381 3'AG 49412381 Downstream 40bp
chr16 49412420 49412420 1 + C T rs145444097 49412419 + 49412399 49412439 41 AGGAAGGACGCCGCCTCCTACCGAAGCCTCTATGGAGTGGA AGGAAGGACGCCGCCTCCTACTGAAGCCTCTATGGAGTGGA < 41bp 0.542163625975902 0.772808153439443 0.69884473 0.23388386 prediction 0.461289054927083 Functional Gain - C16orf78 ENSG00000166152 CDS Human protein_coding chr16:49412419 chr16:49412420 stopgain 0.004 0 22 hm5C_associated_SNPs_114938 0 0 0 0 2 C16orf78 chr16:49412504 5'GT 49412504 Upstream 85bp
chr22 41623137 41623137 1 + C T UCEC 41623136 + 41623116 41623156 41 GGTGGGCATGAAGCTGGAGGCCGTGGACCTGATGGAGCCCC GGTGGGCATGAAGCTGGAGGCTGTGGACCTGATGGAGCCCC < 41bp 0.506093694289812 0.736734309971993 0.38748813 0.26221165 prediction 0.461281231364362 Functional Gain - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41623136 chr22:41623137 synonymous SNV . 0 22 hm5C_associated_SNPs_114940 0 0 1 0 1 L3MBTL2 chr22:41623093 3'AG 41623093 Downstream 45bp
chr20 9498787 9498787 1 + T C HNSC 9498784 + 9498764 9498804 41 CAACAAACCATTTCACTGGCCTCTAGTGATCCGCAGAAGAC CAACAAACCATTTCACTGGCCTCCAGTGATCCGCAGAAGAC < 41bp 0.505305448707463 0.735940577118459 0.3339988 0.88014865 prediction 0.461270256821992 Functional Gain - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9498784 chr20:9498787 synonymous SNV . 0 24 hm5C_associated_SNPs_114942 0 0 0 0 1 LAMP5 chr20:9498875 5'GT 9498875 Upstream 89bp
chr11 64878064 64878064 1 + C A UCEC 64878060 + 64878040 64878080 41 GCAGCAGGGCCGCTACGCCCCCAGCTATACCCCCAGGTCTG GCAGCAGGGCCGCTACGCCCCCAGATATACCCCCAGGTCTG < 41bp 0.328859719139104 0.730629022598751 0.08661443 0.23541477 prediction 0.461258045197502 Functional Gain - VPS51 ENSG00000149823 CDS Human protein_coding chr11:64878060 chr11:64878064 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_114944 0 0 1 0 1 VPS51 chr11:64878075 5'GT 64878075 Upstream 12bp
chr11 46725939 46725939 1 + A G rs147850078 46725936 + 46725916 46725956 41 GTCACCCTCTGGCATCCAGGCAGAGAATATGGTGAGCCCTG GTCACCCTCTGGCATCCAGGCAGGGAATATGGTGAGCCCTG < 41bp 0.497017891199406 0.730615066789115 0.24619386 0.8579738 prediction 0.461230133578229 Functional Gain - ZNF408 ENSG00000175213 CDS Human protein_coding chr11:46725936 chr11:46725939 nonsynonymous SNV 0.028 1 24 hm5C_associated_SNPs_114949 0 0 0 0 1 ZNF408 chr11:46725903 3'AG 46725903 Downstream 37bp
chr8 9182866 9182866 1 + C A rs115006868 9182865 + 9182845 9182885 41 CTTAGTGAGCAAAAACTGATCCGGAAGACTTGTTGGAGGCA CTTAGTGAGCAAAAACTGATCAGGAAGACTTGTTGGAGGCA < 41bp 0.541930429367038 0.772540379209219 0.6164592 0.8219793 prediction 0.461219899684361 Functional Gain - LOC157273 ENSG00000254235 ncRNA_exonic Human lincRNA chr8:9182865 chr8:9182866 . . 0 22 hm5C_associated_SNPs_114950 0 0 0 0 1 LOC157273 chr8:9182923 5'GT 9182923 Upstream 58bp
chr12 111336918 111336918 1 + C T rs114266945 111336917 + 111336897 111336937 41 AAGTCACTGACATCAACCTTCCGCAGTATTTTGGTGAGTCA AAGTCACTGACATCAACCTTCTGCAGTATTTTGGTGAGTCA < 41bp 0.476276661186785 0.730609043708586 0.18404952 0.23823678 prediction 0.461218087417172 Functional Gain - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111336917 chr12:111336918 nonsynonymous SNV 0.054 0 22 hm5C_associated_SNPs_114951 0 0 0 0 1 CCDC63 chr12:111336929 5'GT 111336929 Upstream 12bp
chr1 8390352 8390352 1 + C T SKCM 8390351 + 8390331 8390371 41 AGGGCCCTGGGGGGACAGCTCCGAGTCATTTACCTCTTCAC AGGGCCCTGGGGGGACAGCTCTGAGTCATTTACCTCTTCAC < 41bp 0.535417254372048 0.766020966664919 0.9098271 0.8483253 prediction 0.461207424585742 Functional Gain - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8390351 chr1:8390352 stopgain 0.598 1 22 hm5C_associated_SNPs_114952 0 0 0 0 1 SLC45A1 chr1:8390269 3'AG 8390269 Downstream 84bp
chr10 85964332 85964332 1 + C A rs543254581 85964331 + 85964311 85964351 41 TGGATGGAGACCGGGGCAAACCCAATCGAATTCTCTACAGC TGGATGGAGACCGGGGCAAACACAATCGAATTCTCTACAGC < 41bp 0.461038485551715 0.730602774396468 0.283184 0.24750778 prediction 0.461205548792937 Functional Gain - CDHR1 ENSG00000148600 CDS Human protein_coding chr10:85964331 chr10:85964332 nonsynonymous SNV 0.897 4 22 hm5C_associated_SNPs_114954 0 0 0 0 2 CDHR1 chr10:85964283 3'AG 85964283 Downstream 50bp
chr10 85964332 85964332 1 + C A rs543254581 85964331 + 85964311 85964351 41 TGGATGGAGACCGGGGCAAACCCAATCGAATTCTCTACAGC TGGATGGAGACCGGGGCAAACACAATCGAATTCTCTACAGC < 41bp 0.461038485551715 0.730602774396468 0.283184 0.24750778 prediction 0.461205548792937 Functional Gain - CDHR1 ENSG00000148600 CDS Human protein_coding chr10:85964331 chr10:85964332 nonsynonymous SNV 0.897 4 22 hm5C_associated_SNPs_114954 0 0 0 0 2 CDHR1 chr10:85964361 5'GT 85964361 Upstream 30bp
chr19 41000860 41000860 1 + T G LUAD 41000858 + 41000838 41000878 41 AGCTGGCGGGATGGCTTGGCCTTCAATGCCCTCATTCACCG AGCTGGCGGGATGGCTTGGCCTGCAATGCCCTCATTCACCG < 41bp 0.400156463969661 0.730596765124892 0.076703906 0.111712635 prediction 0.461193530249785 Functional Gain - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41000858 chr19:41000860 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_114958 0 0 0 0 2 SPTBN4 chr19:41000804 3'AG 41000804 Downstream 57bp
chr19 41000860 41000860 1 + T G LUAD 41000858 + 41000838 41000878 41 AGCTGGCGGGATGGCTTGGCCTTCAATGCCCTCATTCACCG AGCTGGCGGGATGGCTTGGCCTGCAATGCCCTCATTCACCG < 41bp 0.400156463969661 0.730596765124892 0.076703906 0.111712635 prediction 0.461193530249785 Functional Gain - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41000858 chr19:41000860 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_114958 0 0 0 0 2 SPTBN4 chr19:41000884 5'GT 41000884 Upstream 25bp
chr11 34664214 34664214 1 + C G BRCA 34664213 + 34664193 34664233 41 GGTGGTGTAATGAATCTCAACCCCGGCAACAACCTCCTTCA GGTGGTGTAATGAATCTCAACGCCGGCAACAACCTCCTTCA < 41bp 0.63785583722427 0.868440645903033 0.12476683 0.18324089 prediction 0.461169617357525 Functional Gain - EHF ENSG00000135373 CDS Human protein_coding chr11:34664213 chr11:34664214 nonsynonymous SNV 0.939 0 22 hm5C_associated_SNPs_114961 0 0 0 0 2 EHF chr11:34664175 3'AG 34664175 Downstream 40bp
chr11 34664214 34664214 1 + C G BRCA 34664213 + 34664193 34664233 41 GGTGGTGTAATGAATCTCAACCCCGGCAACAACCTCCTTCA GGTGGTGTAATGAATCTCAACGCCGGCAACAACCTCCTTCA < 41bp 0.63785583722427 0.868440645903033 0.12476683 0.18324089 prediction 0.461169617357525 Functional Gain - EHF ENSG00000135373 CDS Human protein_coding chr11:34664213 chr11:34664214 nonsynonymous SNV 0.939 0 22 hm5C_associated_SNPs_114961 0 0 0 0 2 EHF chr11:34664274 5'GT 34664274 Upstream 61bp
chr1 15793896 15793896 1 + C A OV 15793892 + 15793872 15793912 41 CTTCCTCAGGGAGACTCTGGCGGGCCACTGAACTGTCAGGC CTTCCTCAGGGAGACTCTGGCGGGACACTGAACTGTCAGGC < 41bp 0.693717307283985 0.924297189480006 0.938059 0.9484347 prediction 0.46115976439204 Functional Gain - CELA2A ENSG00000142615 CDS Human protein_coding chr1:15793892 chr1:15793896 nonsynonymous SNV 0.013 4 25 hm5C_associated_SNPs_114963 0 0 0 0 1 CELA2A chr1:15793881 3'AG 15793881 Downstream 16bp
chrX 122561838 122561838 1 + C A UCEC 122561834 + 122561814 122561854 41 GGAGGGGTTTGGTGGTTCTTCACCCTGATCATAATTTCTTC GGAGGGGTTTGGTGGTTCTTCACCATGATCATAATTTCTTC < 41bp 0.316393249216938 0.730574315143772 0.11930603 0.1167455 prediction 0.461148630287544 Functional Gain - GRIA3 ENSG00000125675 CDS Human protein_coding chrX:122561834 chrX:122561838 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_114964 0 0 0 0 1 GRIA3 chrX:122561792 3'AG 122561792 Downstream 47bp
chr20 3782683 3782683 1 + C T SKCM 3782682 + 3782662 3782702 41 GGCCCCAGGACAGGGACACGCCCGTGCAGAATAAGCGGAGG GGCCCCAGGACAGGGACACGCTCGTGCAGAATAAGCGGAGG < 41bp 0.561593089351228 0.792160056538836 0.07265088 0.21128365 prediction 0.461133934375216 Functional Gain - CDC25B ENSG00000101224 CDS Human protein_coding chr20:3782682 chr20:3782683 nonsynonymous SNV 0.002 4 22 hm5C_associated_SNPs_114966 0 0 1 0 1 CDC25B chr20:3782747 5'GT 3782747 Upstream 65bp
chr20 3784183 3784183 1 + A G COAD 3784180 + 3784160 3784200 41 TCTCATCTGAGCGTGGGCCCCGCATGTGAGTCCCAGCTCCG TCTCATCTGAGCGTGGGCCCCGCGTGTGAGTCCCAGCTCCG < 41bp 0.521265654431204 0.751832394733432 0.23582539 0.4890633 prediction 0.461133480604456 Functional Gain - CDC25B ENSG00000101224 CDS Human protein_coding chr20:3784180 chr20:3784183 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_114967 0 0 1 0 1 CDC25B chr20:3784184 5'GT 3784184 Upstream 2bp
chrX 46884169 46884169 1 + C T OV 46884168 + 46884148 46884188 41 GACGTTCTGTTTATCCGACCCCGGAAGTATATTCACTGCTC GACGTTCTGTTTATCCGACCCTGGAAGTATATTCACTGCTC < 41bp 0.561480855079297 0.792045667584792 0.38265678 0.3504104 prediction 0.46112962501099 Functional Gain - JADE3 ENSG00000102221 CDS Human protein_coding chrX:46884168 chrX:46884169 nonsynonymous SNV 0.754 0 22 hm5C_associated_SNPs_114968 0 0 1 0 1 JADE3 chrX:46884126 3'AG 46884126 Downstream 44bp
chr21 30693737 30693737 1 + C A COAD 30693736 + 30693716 30693756 41 TTTGTGGAGGGACAGCGGTTCCGCGCTCACCGGTCCGTGCT TTTGTGGAGGGACAGCGGTTCAGCGCTCACCGGTCCGTGCT < 41bp 0.573852099700072 0.804416394782429 0.4286596 0.52596724 prediction 0.461128590164714 Functional Gain - BACH1 ENSG00000156273 CDS Human protein_coding chr21:30693736 chr21:30693737 nonsynonymous SNV 0.953 2 22 hm5C_associated_SNPs_114969 0 0 1 0 1 BACH1 chr21:30693835 5'GT 30693835 Upstream 99bp
chrX 54841116 54841116 1 + C A OV 54841115 + 54841095 54841135 41 TACCTGGACTATGCCAGAGTCCCCAATAGCAATCCCCCTGA TACCTGGACTATGCCAGAGTCACCAATAGCAATCCCCCTGA < 41bp 0.566502151942015 0.797064719819118 0.12533092 0.22066048 prediction 0.461125135754206 Functional Gain - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54841115 chrX:54841116 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_114971 0 0 1 0 2 MAGED2 chrX:54841094 3'AG 54841094 Downstream 23bp
chrX 54841116 54841116 1 + C A OV 54841115 + 54841095 54841135 41 TACCTGGACTATGCCAGAGTCCCCAATAGCAATCCCCCTGA TACCTGGACTATGCCAGAGTCACCAATAGCAATCCCCCTGA < 41bp 0.566502151942015 0.797064719819118 0.12533092 0.22066048 prediction 0.461125135754206 Functional Gain - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54841115 chrX:54841116 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_114971 0 0 1 0 2 MAGED2 chrX:54841208 5'GT 54841208 Upstream 93bp
chr19 37748241 37748241 1 + T C rs146849820 37748239 + 37748219 37748259 41 TGGGGATGGAAGTGTGATTGCTTCATTCAAATGCACGCCCC TGGGGATGGAAGTGTGATTGCTCCATTCAAATGCACGCCCC < 41bp 0.510973060959485 0.741533910226576 0.20133647 0.6634837 prediction 0.461121698534182 Functional Gain - LINC01535 ENSG00000226686 ncRNA_exonic Human lincRNA chr19:37748239 chr19:37748241 . . 0 23 hm5C_associated_SNPs_114972 0 0 1 0 1 LINC01535 chr19:37748296 5'GT 37748296 Upstream 56bp
chr15 91478587 91478587 1 + C A rs200876300 91478586 + 91478566 91478606 41 TGGTCCAGGGACCCCCGAGCCCCGGCCGGCCACCCCCGGGG TGGTCCAGGGACCCCCGAGCCACGGCCGGCCACCCCCGGGG < 41bp 0.533645964117391 0.764202474966287 0.19920984 0.32007134 prediction 0.461113021697791 Functional Gain - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91478586 chr15:91478587 synonymous SNV . 0 22 hm5C_associated_SNPs_114973 0 0 1 0 1 UNC45A chr15:91478605 5'GT 91478605 Upstream 19bp
chr11 36594898 36594898 1 + C T LUAD 36594897 + 36594877 36594917 41 CCTTGGGACTCAGTTCTGCCCCAGATGAAATTCAGCACCCA CCTTGGGACTCAGTTCTGCCCTAGATGAAATTCAGCACCCA < 41bp 0.528799284076415 0.759353506547653 0.28624985 0.29061222 prediction 0.461108444942475 Functional Gain - RAG1 ENSG00000166349 CDS Human protein_coding chr11:36594897 chr11:36594898 nonsynonymous SNV 0.983 2 22 hm5C_associated_SNPs_114974 0 0 0 0 1 RAG1 chr11:36594841 3'AG 36594841 Downstream 58bp
chr2 162279909 162279909 1 + T A LUAD 162279905 + 162279885 162279925 41 ACACCGGCTGTGACATGGACCGCCTGACCCCCTCGCCCAAC ACACCGGCTGTGACATGGACCGCCAGACCCCCTCGCCCAAC < 41bp 0.658783109049667 0.889333731549604 0.14306667 0.88135 prediction 0.461101244999875 Functional Gain - TBR1 ENSG00000136535 CDS Human protein_coding chr2:162279905 chr2:162279909 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_114976 0 0 1 0 1 TBR1 chr2:162279880 3'AG 162279880 Downstream 30bp
chr1 160105045 160105045 1 + C T SKCM 160105044 + 160105024 160105064 41 TCGTCTTTGCTCGAACGTCTCCCCAGCAGAAGCTCATCATT TCGTCTTTGCTCGAACGTCTCTCCAGCAGAAGCTCATCATT < 41bp 0.444281107149594 0.730538745048633 0.056607425 0.9344568 prediction 0.461077490097267 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160105044 chr1:160105045 nonsynonymous SNV 0.785 5 22 hm5C_associated_SNPs_114982 0 0 0 0 1 ATP1A2 chr1:160105085 5'GT 160105085 Upstream 41bp
chr10 45939225 45939225 1 + C A SARC 45939224 + 45939204 45939244 41 GCAGCTGTCGGAGTACCTGACCGTGGTGATCTTCACCGCCT GCAGCTGTCGGAGTACCTGACAGTGGTGATCTTCACCGCCT < 41bp 0.467119348969145 0.730532812978217 0.67171425 0.8114282 prediction 0.461065625956435 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45939224 chr10:45939225 synonymous SNV . 0 22 hm5C_associated_SNPs_114985 0 0 0 0 2 ALOX5 chr10:45939176 3'AG 45939176 Downstream 50bp
chr10 45939225 45939225 1 + C A SARC 45939224 + 45939204 45939244 41 GCAGCTGTCGGAGTACCTGACCGTGGTGATCTTCACCGCCT GCAGCTGTCGGAGTACCTGACAGTGGTGATCTTCACCGCCT < 41bp 0.467119348969145 0.730532812978217 0.67171425 0.8114282 prediction 0.461065625956435 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45939224 chr10:45939225 synonymous SNV . 0 22 hm5C_associated_SNPs_114985 0 0 0 0 2 ALOX5 chr10:45939276 5'GT 45939276 Upstream 52bp
chr17 61613356 61613356 1 + C A rs140145269 61613352 + 61613332 61613372 41 CTTCACCTTCAGCAGCCTCACCAGCGTGGGCTTCGGCAATG CTTCACCTTCAGCAGCCTCACCAGAGTGGGCTTCGGCAATG < 41bp 0.312692927652973 0.730529709894896 0.16953728 0.41832337 prediction 0.461059419789792 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61613352 chr17:61613356 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_114986 0 0 0 0 2 KCNH6 chr17:61613344 3'AG 61613344 Downstream 13bp
chr17 61613356 61613356 1 + C A rs140145269 61613352 + 61613332 61613372 41 CTTCACCTTCAGCAGCCTCACCAGCGTGGGCTTCGGCAATG CTTCACCTTCAGCAGCCTCACCAGAGTGGGCTTCGGCAATG < 41bp 0.312692927652973 0.730529709894896 0.16953728 0.41832337 prediction 0.461059419789792 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61613352 chr17:61613356 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_114986 0 0 0 0 2 KCNH6 chr17:61613429 5'GT 61613429 Upstream 74bp
chr11 372947 372947 1 + T A LUAD 372943 + 372923 372963 41 CCTGCACTTCCCGCTGTTCCCTCATGTGAGTGCCGGGGTTG CCTGCACTTCCCGCTGTTCCCTCAAGTGAGTGCCGGGGTTG < 41bp 0.656424007848601 0.886953538523855 0.47402605 0.8574361 prediction 0.461059061350507 Functional Gain - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:372943 chr11:372947 nonsynonymous SNV 0.790 3 25 hm5C_associated_SNPs_114987 0 0 1 0 2 B4GALNT4 chr11:372852 3'AG 372852 Downstream 96bp
chr11 372947 372947 1 + T A LUAD 372943 + 372923 372963 41 CCTGCACTTCCCGCTGTTCCCTCATGTGAGTGCCGGGGTTG CCTGCACTTCCCGCTGTTCCCTCAAGTGAGTGCCGGGGTTG < 41bp 0.656424007848601 0.886953538523855 0.47402605 0.8574361 prediction 0.461059061350507 Functional Gain - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:372943 chr11:372947 nonsynonymous SNV 0.790 3 25 hm5C_associated_SNPs_114987 0 0 1 0 2 B4GALNT4 chr11:372947 5'GT 372947 Upstream 1bp
chrX 70386886 70386886 1 + A G LGG 70386883 + 70386863 70386903 41 CTTTTCCAGAGAGCCATCATCCAAAGTGGCTCTGCTCTGTC CTTTTCCAGAGAGCCATCATCCAGAGTGGCTCTGCTCTGTC < 41bp 0.501688856306406 0.732217800070976 0.48648512 0.80974835 prediction 0.461057887529139 Functional Gain - NLGN3 ENSG00000196338 CDS Human protein_coding chrX:70386883 chrX:70386886 synonymous SNV . 0 24 hm5C_associated_SNPs_114988 0 0 0 0 1 NLGN3 chrX:70386861 3'AG 70386861 Downstream 26bp
chr8 25266373 25266373 1 + T A CESC 25266369 + 25266349 25266389 41 GTCTCCAGTTGATGGATAATCGGCTATCACCATTTCACGGT GTCTCCAGTTGATGGATAATCGGCAATCACCATTTCACGGT < 41bp 0.43439925598279 0.730523843152284 0.37832132 0.30292645 prediction 0.461047686304569 Functional Gain - DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25266369 chr8:25266373 nonsynonymous SNV 0.592 2 25 hm5C_associated_SNPs_114991 0 0 0 0 2 DOCK5 chr8:25266318 3'AG 25266318 Downstream 56bp
chr8 25266373 25266373 1 + T A CESC 25266369 + 25266349 25266389 41 GTCTCCAGTTGATGGATAATCGGCTATCACCATTTCACGGT GTCTCCAGTTGATGGATAATCGGCAATCACCATTTCACGGT < 41bp 0.43439925598279 0.730523843152284 0.37832132 0.30292645 prediction 0.461047686304569 Functional Gain - DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25266369 chr8:25266373 nonsynonymous SNV 0.592 2 25 hm5C_associated_SNPs_114991 0 0 0 0 2 DOCK5 chr8:25266456 5'GT 25266456 Upstream 84bp
chr11 118851366 118851366 1 + C T HNSC 118851365 + 118851345 118851385 41 TTGACCGAGGAGGGACACCGCCGCTTTGCGGAGGAGGCCCG TTGACCGAGGAGGGACACCGCTGCTTTGCGGAGGAGGCCCG < 41bp 0.48069470824535 0.730522194795707 0.08899808 0.15605932 prediction 0.461044389591414 Functional Gain - FOXR1 ENSG00000176302 CDS Human protein_coding chr11:118851365 chr11:118851366 nonsynonymous SNV 0.991 5 22 hm5C_associated_SNPs_114992 0 0 0 0 2 FOXR1 chr11:118851278 3'AG 118851278 Downstream 89bp
chr11 118851366 118851366 1 + C T HNSC 118851365 + 118851345 118851385 41 TTGACCGAGGAGGGACACCGCCGCTTTGCGGAGGAGGCCCG TTGACCGAGGAGGGACACCGCTGCTTTGCGGAGGAGGCCCG < 41bp 0.48069470824535 0.730522194795707 0.08899808 0.15605932 prediction 0.461044389591414 Functional Gain - FOXR1 ENSG00000176302 CDS Human protein_coding chr11:118851365 chr11:118851366 nonsynonymous SNV 0.991 5 22 hm5C_associated_SNPs_114992 0 0 0 0 2 FOXR1 chr11:118851438 5'GT 118851438 Upstream 73bp
chr20 42695467 42695467 1 + C T SKCM 42695466 + 42695446 42695486 41 GGGACTGGGACAGCAGCTACCCCAGTGGGGAGTGTGGCATC GGGACTGGGACAGCAGCTACCTCAGTGGGGAGTGTGGCATC < 41bp 0.578654567350573 0.809175723733002 0.20673802 0.22382796 prediction 0.461042312764858 Functional Gain - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695466 chr20:42695467 nonsynonymous SNV 0.979 1 22 hm5C_associated_SNPs_114994 0 0 1 0 2 TOX2 chr20:42695370 3'AG 42695370 Downstream 98bp
chr20 42695467 42695467 1 + C T SKCM 42695466 + 42695446 42695486 41 GGGACTGGGACAGCAGCTACCCCAGTGGGGAGTGTGGCATC GGGACTGGGACAGCAGCTACCTCAGTGGGGAGTGTGGCATC < 41bp 0.578654567350573 0.809175723733002 0.20673802 0.22382796 prediction 0.461042312764858 Functional Gain - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695466 chr20:42695467 nonsynonymous SNV 0.979 1 22 hm5C_associated_SNPs_114994 0 0 1 0 2 TOX2 chr20:42695497 5'GT 42695497 Upstream 31bp
chr19 15221490 15221490 1 + C A LUAD 15221486 + 15221466 15221506 41 GTGGAGCGGGAGCGGCCCCCCGGCCAGGTGCCCCTCATCAT GTGGAGCGGGAGCGGCCCCCCGGCAAGGTGCCCCTCATCAT < 41bp 0.695776145720521 0.926297064481065 0.25601977 0.35706082 prediction 0.461041837521088 Functional Gain - SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15221486 chr19:15221490 nonsynonymous SNV 0.831 0 25 hm5C_associated_SNPs_114995 0 0 0 0 1 SYDE1 chr19:15221546 5'GT 15221546 Upstream 57bp
chrX 12828219 12828219 1 + T A CESC 12828215 + 12828195 12828235 41 TGGATTCGGGAAAACATTGCCGAGTGGAAGAACTGTATCAT TGGATTCGGGAAAACATTGCCGAGAGGAAGAACTGTATCAT < 41bp 0.64772684585524 0.878244968814896 0.46492398 0.6612977 prediction 0.461036245919312 Functional Gain - PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12828215 chrX:12828219 nonsynonymous SNV 0.933 4 25 hm5C_associated_SNPs_114996 0 0 1 0 2 PRPS2 chrX:12828141 3'AG 12828141 Downstream 79bp
chrX 12828219 12828219 1 + T A CESC 12828215 + 12828195 12828235 41 TGGATTCGGGAAAACATTGCCGAGTGGAAGAACTGTATCAT TGGATTCGGGAAAACATTGCCGAGAGGAAGAACTGTATCAT < 41bp 0.64772684585524 0.878244968814896 0.46492398 0.6612977 prediction 0.461036245919312 Functional Gain - PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12828215 chrX:12828219 nonsynonymous SNV 0.933 4 25 hm5C_associated_SNPs_114996 0 0 1 0 2 PRPS2 chrX:12828265 5'GT 12828265 Upstream 47bp
chr4 154191516 154191516 1 + C A COAD 154191512 + 154191492 154191532 41 GCGTGCAGGGTCAAAGACAGCCGGCCCCCCATGTCAGTGGT GCGTGCAGGGTCAAAGACAGCCGGACCCCCATGTCAGTGGT < 41bp 0.436970597912716 0.730515926705466 0.23992035 0.4071182 prediction 0.461031853410932 Functional Gain - TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154191512 chr4:154191516 synonymous SNV . 0 25 hm5C_associated_SNPs_114997 0 0 1 0 2 TRIM2 chr4:154191487 3'AG 154191487 Downstream 30bp
chr4 154191516 154191516 1 + C A COAD 154191512 + 154191492 154191532 41 GCGTGCAGGGTCAAAGACAGCCGGCCCCCCATGTCAGTGGT GCGTGCAGGGTCAAAGACAGCCGGACCCCCATGTCAGTGGT < 41bp 0.436970597912716 0.730515926705466 0.23992035 0.4071182 prediction 0.461031853410932 Functional Gain - TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154191512 chr4:154191516 synonymous SNV . 0 25 hm5C_associated_SNPs_114997 0 0 1 0 2 TRIM2 chr4:154191490 3'AG 154191490 Downstream 27bp
chr12 109862602 109862602 1 + C A LUAD 109862598 + 109862578 109862618 41 TCCTGAGGGAATGCTTCCTGCTGGCCGAGTTAGAAAACCGG TCCTGAGGGAATGCTTCCTGCTGGACGAGTTAGAAAACCGG < 41bp 0.31106866467756 0.730514636636945 0.06889516 0.063759595 prediction 0.461029273273891 Functional Gain - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109862598 chr12:109862602 nonsynonymous SNV 0.929 1 25 hm5C_associated_SNPs_115000 0 0 0 0 2 MYO1H chr12:109862553 3'AG 109862553 Downstream 50bp
chr12 109862602 109862602 1 + C A LUAD 109862598 + 109862578 109862618 41 TCCTGAGGGAATGCTTCCTGCTGGCCGAGTTAGAAAACCGG TCCTGAGGGAATGCTTCCTGCTGGACGAGTTAGAAAACCGG < 41bp 0.31106866467756 0.730514636636945 0.06889516 0.063759595 prediction 0.461029273273891 Functional Gain - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109862598 chr12:109862602 nonsynonymous SNV 0.929 1 25 hm5C_associated_SNPs_115000 0 0 0 0 2 MYO1H chr12:109862633 5'GT 109862633 Upstream 32bp
chr19 41239252 41239252 1 + C T UCEC 41239251 + 41239231 41239271 41 TCCACCTCTACCCTGGGCTTCCGGATCGAGGGCATCAAGGT TCCACCTCTACCCTGGGCTTCTGGATCGAGGGCATCAAGGT < 41bp 0.565730873977412 0.796239254660269 0.07125446 0.042307556 prediction 0.461016761365715 Functional Gain - ITPKC ENSG00000086544 CDS Human protein_coding chr19:41239251 chr19:41239252 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_115003 0 0 1 0 1 ITPKC chr19:41239269 5'GT 41239269 Upstream 18bp
chr14 69969563 69969563 1 + C G BRCA 69969562 + 69969542 69969582 41 AGACAAACTGATGGAAGAGACCGAAGAACTCTGCCTTCAGA AGACAAACTGATGGAAGAGACGGAAGAACTCTGCCTTCAGA < 41bp 0.605169367489367 0.835666920746761 0.45517835 0.6264725 prediction 0.460995106514787 Functional Gain - PLEKHD1 ENSG00000175985 CDS Human protein_coding chr14:69969562 chr14:69969563 synonymous SNV . 0 22 hm5C_associated_SNPs_115004 0 0 0 0 2 PLEKHD1 chr14:69969544 3'AG 69969544 Downstream 20bp
chr14 69969563 69969563 1 + C G BRCA 69969562 + 69969542 69969582 41 AGACAAACTGATGGAAGAGACCGAAGAACTCTGCCTTCAGA AGACAAACTGATGGAAGAGACGGAAGAACTCTGCCTTCAGA < 41bp 0.605169367489367 0.835666920746761 0.45517835 0.6264725 prediction 0.460995106514787 Functional Gain - PLEKHD1 ENSG00000175985 CDS Human protein_coding chr14:69969562 chr14:69969563 synonymous SNV . 0 22 hm5C_associated_SNPs_115004 0 0 0 0 2 PLEKHD1 chr14:69969596 5'GT 69969596 Upstream 34bp
chr1 1219401 1219401 1 + C T rs201680784 1219400 + 1219380 1219420 41 TTCAGAGCTGCCAGCTGCCCCCGCAATGGCTGAGCACCGAA TTCAGAGCTGCCAGCTGCCCCTGCAATGGCTGAGCACCGAA < 41bp 0.537348813301979 0.767821683319076 0.16264954 0.8110445 prediction 0.460945740034193 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1219400 chr1:1219401 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_115012 0 0 0 0 2 SCNN1D chr1:1219358 3'AG 1219358 Downstream 44bp
chr1 1219401 1219401 1 + C T rs201680784 1219400 + 1219380 1219420 41 TTCAGAGCTGCCAGCTGCCCCCGCAATGGCTGAGCACCGAA TTCAGAGCTGCCAGCTGCCCCTGCAATGGCTGAGCACCGAA < 41bp 0.537348813301979 0.767821683319076 0.16264954 0.8110445 prediction 0.460945740034193 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1219400 chr1:1219401 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_115012 0 0 0 0 2 SCNN1D chr1:1219470 5'GT 1219470 Upstream 70bp
chr19 53013843 53013843 1 + T G HNSC 53013841 + 53013821 53013861 41 GTAGATATCTCTTCCAAACGCATGATGAAGGAGGTCTTGTC GTAGATATCTCTTCCAAACGCAGGATGAAGGAGGTCTTGTC < 41bp 0.396303788381098 0.730471624321563 0.34480318 0.8914648 prediction 0.460943248643126 Functional Gain - ZNF578 ENSG00000258405 CDS Human protein_coding chr19:53013841 chr19:53013843 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_115014 0 0 0 0 1 ZNF578 chr19:53013825 3'AG 53013825 Downstream 19bp
chr19 3586569 3586569 1 + T C LIHC 3586567 + 3586547 3586587 41 GGTCAGATAGGCCTGGAGGACTTCATCTTTGCCCACGTGCG GGTCAGATAGGCCTGGAGGACTCCATCTTTGCCCACGTGCG < 41bp 0.4313361612147 0.730471022258461 0.2713454 0.93225765 prediction 0.460942044516923 Functional Gain - GIPC3 ENSG00000179855 CDS Human protein_coding chr19:3586567 chr19:3586569 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_115015 0 0 0 0 1 GIPC3 chr19:3586493 3'AG 3586493 Downstream 77bp
chr12 72091239 72091239 1 + T C SKCM 72091237 + 72091217 72091257 41 GGCCTGCTCTGCTGGAGACACATGGGCTTCAGAAGTTGGCC GGCCTGCTCTGCTGGAGACACACGGGCTTCAGAAGTTGGCC < 41bp 0.603917722884834 0.834388722068914 0.39526057 0.34679323 prediction 0.46094199836816 Functional Gain - TMEM19 ENSG00000139291 CDS Human protein_coding chr12:72091237 chr12:72091239 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_115016 0 0 1 0 1 TMEM19 chr12:72091314 5'GT 72091314 Upstream 76bp
chr8 11640784 11640784 1 + A G rs8191642 11640781 + 11640761 11640801 41 CAGTTGTCTTGGAGCTCTTCCCCAGTGGTCACACCCACCTG CAGTTGTCTTGGAGCTCTTCCCCGGTGGTCACACCCACCTG < 41bp 0.469739311837263 0.730470623024068 0.25771388 0.41208038 prediction 0.460941246048136 Functional Gain - NEIL2 ENSG00000154328 CDS Human protein_coding chr8:11640781 chr8:11640784 synonymous SNV . 0 24 hm5C_associated_SNPs_115017 0 0 1 0 1 NEIL2 chr8:11640712 3'AG 11640712 Downstream 73bp
chr16 66881124 66881124 1 + C T STAD 66881123 + 66881103 66881143 41 GACTTCAATGACAGCGATGACCGAACCGGTAAGTGGCCCCT GACTTCAATGACAGCGATGACTGAACCGGTAAGTGGCCCCT < 41bp 0.529383044491602 0.759850948529773 0.263093 0.21876532 prediction 0.460935808076344 Functional Gain - CA7 ENSG00000168748 CDS Human protein_coding chr16:66881123 chr16:66881124 stopgain 0.995 1 22 hm5C_associated_SNPs_115020 0 0 0 0 1 CA7 chr16:66881130 5'GT 66881130 Upstream 7bp
chr10 7751045 7751045 1 + A G LUAD 7751042 + 7751022 7751062 41 TCCAGTCTACTATTACTTCTCGGATGGCCACCACCATGATC TCCAGTCTACTATTACTTCTCGGGTGGCCACCACCATGATC < 41bp 0.538998251474502 0.769457709355941 0.884928 0.92483556 prediction 0.460918915762878 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7751042 chr10:7751045 nonsynonymous SNV 0.747 0 24 hm5C_associated_SNPs_115025 0 0 1 0 1 ITIH2 chr10:7750985 3'AG 7750985 Downstream 61bp
chr9 130149557 130149557 1 + C T SKCM 130149556 + 130149536 130149576 41 GGGCCAGTGCCCGAAATTCTCCTCAGACACCCCCGGGCCGA GGGCCAGTGCCCGAAATTCTCTTCAGACACCCCCGGGCCGA < 41bp 0.586712123037547 0.817164204084729 0.32819736 0.54354537 prediction 0.460904162094363 Functional Gain - GARNL3 ENSG00000136895 CDS Human protein_coding chr9:130149556 chr9:130149557 nonsynonymous SNV 0.977 2 22 hm5C_associated_SNPs_115028 0 0 0 0 2 GARNL3 chr9:130149472 3'AG 130149472 Downstream 86bp
chr9 130149557 130149557 1 + C T SKCM 130149556 + 130149536 130149576 41 GGGCCAGTGCCCGAAATTCTCCTCAGACACCCCCGGGCCGA GGGCCAGTGCCCGAAATTCTCTTCAGACACCCCCGGGCCGA < 41bp 0.586712123037547 0.817164204084729 0.32819736 0.54354537 prediction 0.460904162094363 Functional Gain - GARNL3 ENSG00000136895 CDS Human protein_coding chr9:130149556 chr9:130149557 nonsynonymous SNV 0.977 2 22 hm5C_associated_SNPs_115028 0 0 0 0 2 GARNL3 chr9:130149610 5'GT 130149610 Upstream 54bp
chr6 151869573 151869573 1 + A G BRCA 151869570 + 151869550 151869590 41 AGGCTGGCTTCAGAAGTCAACAGAGAGCAGAAAAAAGCTGC AGGCTGGCTTCAGAAGTCAACAGGGAGCAGAAAAAAGCTGC < 41bp 0.503572911553983 0.734020417443584 0.42338115 0.786816 prediction 0.460895011779203 Functional Gain - CCDC170 ENSG00000120262 CDS Human protein_coding chr6:151869570 chr6:151869573 synonymous SNV . 0 24 hm5C_associated_SNPs_115029 0 0 0 0 1 CCDC170 chr6:151869624 5'GT 151869624 Upstream 52bp
chr10 105204417 105204417 1 + C A ESCA 105204413 + 105204393 105204433 41 GTCTATATCGACATGACCATCAAGCACGGCAGCCAGAAGGA GTCTATATCGACATGACCATCAAGAACGGCAGCCAGAAGGA < 41bp 0.315791578209212 0.730443889848377 0.18646371 0.42085832 prediction 0.460887779696753 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105204413 chr10:105204417 nonsynonymous SNV 0.990 3 25 hm5C_associated_SNPs_115030 0 0 0 0 1 PDCD11 chr10:105204439 5'GT 105204439 Upstream 23bp
chr10 71390027 71390027 1 + C A rs115566752 71390026 + 71390006 71390046 41 TGGGAGGAAACCGCCTGGAGCCGCCGGGAGTGGACGCCGCC TGGGAGGAAACCGCCTGGAGCAGCCGGGAGTGGACGCCGCC < 41bp 0.498770410615166 0.730440875884351 0.488931 0.68188703 prediction 0.460881751768702 Functional Gain - C10orf35 ENSG00000171224 UTR5 Human protein_coding chr10:71390026 chr10:71390027 . . 0 22 hm5C_associated_SNPs_115031 0 0 0 0 1 C10orf35 chr10:71390069 5'GT 71390069 Upstream 43bp
chr16 24919397 24919397 1 + C A LUAD 24919393 + 24919373 24919413 41 AGTCCATCAGCTCCTACCTGCAGCCGCCTGTGGCGGTGGTC AGTCCATCAGCTCCTACCTGCAGCAGCCTGTGGCGGTGGTC < 41bp 0.31115926429468 0.730434213542376 0.08093956 0.12359068 prediction 0.460868427084751 Functional Gain - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24919393 chr16:24919397 nonsynonymous SNV 0.979 5 25 hm5C_associated_SNPs_115033 0 0 0 0 1 SLC5A11 chr16:24919452 5'GT 24919452 Upstream 56bp
chr20 49195120 49195120 1 + T C UCEC 49195118 + 49195098 49195138 41 GTGGTGCACTGCAGTGCAGGCATCGGCAGGTCTGGAACCTT GTGGTGCACTGCAGTGCAGGCACCGGCAGGTCTGGAACCTT < 41bp 0.456400819816072 0.730433694435509 0.5935179 0.27323303 prediction 0.460867388871018 Functional Gain - PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49195118 chr20:49195120 nonsynonymous SNV 0.981 5 23 hm5C_associated_SNPs_115034 0 0 1 0 1 PTPN1 chr20:49195166 5'GT 49195166 Upstream 47bp
chr3 49840843 49840843 1 + T C rs115355405 49840841 + 49840821 49840861 41 TGGACATGCACAGCGCTCGGCTTGACAGCTTCCTTAGCCAG TGGACATGCACAGCGCTCGGCTCGACAGCTTCCTTAGCCAG < 41bp 0.572314531103771 0.802736725294754 0.20241925 0.3775724 prediction 0.460844388381967 Functional Gain - FAM212A ENSG00000185614 CDS Human protein_coding chr3:49840841 chr3:49840843 synonymous SNV . 0 23 hm5C_associated_SNPs_115036 0 0 0 0 1 FAM212A chr3:49840876 5'GT 49840876 Upstream 34bp
chr1 220970101 220970101 1 + C G rs150126154 220970100 + 220970080 220970120 41 ACTTCGAGCCTCACATGCGACCGAGACGTCCTCATCAAATA ACTTCGAGCCTCACATGCGACGGAGACGTCCTCATCAAATA < 41bp 0.40627496242511 0.730403845722249 0.12419912 0.31326848 prediction 0.460807691444498 Functional Gain - MARC1 ENSG00000186205 CDS Human protein_coding chr1:220970100 chr1:220970101 nonsynonymous SNV 0.068 2 22 hm5C_associated_SNPs_115041 0 0 1 0 1 MARC1 chr1:220970147 5'GT 220970147 Upstream 47bp
chr14 105222083 105222083 1 + C T LGG 105222082 + 105222062 105222102 41 AAGCCTGGCCCTACAGGGGCCCCGAGGGCTGCACGTGGGCA AAGCCTGGCCCTACAGGGGCCTCGAGGGCTGCACGTGGGCA < 41bp 0.549373335712305 0.779774952528104 0.39625388 0.67090946 prediction 0.460803233631599 Functional Gain - SIVA1 ENSG00000184990 CDS Human protein_coding chr14:105222082 chr14:105222083 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_115042 0 0 1 0 1 SIVA1 chr14:105222161 5'GT 105222161 Upstream 79bp
chr9 95797678 95797678 1 + C T THCA 95797677 + 95797657 95797697 41 GCAAACTGAGTGTGCCGGACCCTGAGGAGAGGCTGGACTCG GCAAACTGAGTGTGCCGGACCTTGAGGAGAGGCTGGACTCG < 41bp 0.510783499376049 0.741174547621269 0.70995724 0.69193876 prediction 0.46078209649044 Functional Gain - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95797677 chr9:95797678 nonsynonymous SNV 0.004 1 22 hm5C_associated_SNPs_115046 0 0 0 0 1 FGD3 chr9:95797620 3'AG 95797620 Downstream 59bp
chrX 129171431 129171431 1 + C T HNSC 129171430 + 129171410 129171450 41 AGCCCTGCATGAGGCTTGTTCCCGGGGCTGGACCGACATCC AGCCCTGCATGAGGCTTGTTCTCGGGGCTGGACCGACATCC < 41bp 0.579836892543789 0.810227055926216 0.9157995 0.3256927 prediction 0.460780326764854 Functional Gain - BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129171430 chrX:129171431 synonymous SNV . 0 22 hm5C_associated_SNPs_115047 0 0 1 0 1 BCORL1 chrX:129171342 3'AG 129171342 Downstream 90bp
chrX 56592033 56592033 1 + C T UCEC 56592032 + 56592012 56592052 41 GAGCAAATGCTCCACAGCTGCCGAATCCAGAAGTCAGATTT GAGCAAATGCTCCACAGCTGCTGAATCCAGAAGTCAGATTT < 41bp 0.513406394704543 0.74379477891201 0.38516054 0.40649757 prediction 0.460776768414934 Functional Gain - UBQLN2 ENSG00000188021 CDS Human protein_coding chrX:56592032 chrX:56592033 nonsynonymous SNV 0.999 0 22 hm5C_associated_SNPs_115048 0 0 1 0 1 UBQLN2 chrX:56592002 3'AG 56592002 Downstream 32bp
chr14 24529224 24529224 1 + C T SKCM 24529223 + 24529203 24529243 41 CTTCCCCGTGAGCGACATCTCCCAAGCCTATCGCAGCGCGC CTTCCCCGTGAGCGACATCTCTCAAGCCTATCGCAGCGCGC < 41bp 0.579786473698372 0.81016378988207 0.17126963 0.19361532 prediction 0.460754632367397 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24529223 chr14:24529224 synonymous SNV . 0 22 hm5C_associated_SNPs_115054 0 0 0 0 2 CARMIL3 chr14:24529179 3'AG 24529179 Downstream 46bp
chr14 24529224 24529224 1 + C T SKCM 24529223 + 24529203 24529243 41 CTTCCCCGTGAGCGACATCTCCCAAGCCTATCGCAGCGCGC CTTCCCCGTGAGCGACATCTCTCAAGCCTATCGCAGCGCGC < 41bp 0.579786473698372 0.81016378988207 0.17126963 0.19361532 prediction 0.460754632367397 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24529223 chr14:24529224 synonymous SNV . 0 22 hm5C_associated_SNPs_115054 0 0 0 0 2 CARMIL3 chr14:24529272 5'GT 24529272 Upstream 49bp
chr17 59482065 59482065 1 + C A rs182290035 59482064 + 59482044 59482084 41 CCTCGTCGTGCGACCCTCCCCCCGCGCGGGAACCACCCACC CCTCGTCGTGCGACCCTCCCCACGCGCGGGAACCACCCACC < 41bp 0.476385005980747 0.730356804932345 0.13050124 0.45925838 prediction 0.460713609864689 Functional Gain - TBX2 ENSG00000121068 CDS Human protein_coding chr17:59482064 chr17:59482065 nonsynonymous SNV 0.455 4 22 hm5C_associated_SNPs_115060 0 0 0 0 2 TBX2 chr17:59481967 3'AG 59481967 Downstream 99bp
chr17 59482065 59482065 1 + C A rs182290035 59482064 + 59482044 59482084 41 CCTCGTCGTGCGACCCTCCCCCCGCGCGGGAACCACCCACC CCTCGTCGTGCGACCCTCCCCACGCGCGGGAACCACCCACC < 41bp 0.476385005980747 0.730356804932345 0.13050124 0.45925838 prediction 0.460713609864689 Functional Gain - TBX2 ENSG00000121068 CDS Human protein_coding chr17:59482064 chr17:59482065 nonsynonymous SNV 0.455 4 22 hm5C_associated_SNPs_115060 0 0 0 0 2 TBX2 chr17:59482130 5'GT 59482130 Upstream 66bp
chr2 191524715 191524715 1 + T G LUSC 191524713 + 191524693 191524733 41 AGGATGGGAAACATCTCACACTTCATGAGGTACAAAGCCCG AGGATGGGAAACATCTCACACTGCATGAGGTACAAAGCCCG < 41bp 0.404824263438587 0.730353868275771 0.036902845 0.097762644 prediction 0.460707736551541 Functional Gain - NAB1 ENSG00000138386 CDS Human protein_coding chr2:191524713 chr2:191524715 synonymous SNV . 0 23 hm5C_associated_SNPs_115064 0 0 0 0 1 NAB1 chr2:191524721 5'GT 191524721 Upstream 7bp
chr2 218941190 218941190 1 + A G COAD 218941187 + 218941167 218941207 41 CCGGAAGGCTGAGGAGCAGGCCCAGCGCCAGGAGCAGCTGC CCGGAAGGCTGAGGAGCAGGCCCGGCGCCAGGAGCAGCTGC < 41bp 0.557652211241733 0.788003242284997 0.13306981 0.36500853 prediction 0.460702062086526 Functional Gain - RUFY4 ENSG00000188282 CDS Human protein_coding chr2:218941187 chr2:218941190 nonsynonymous SNV 0.090 0 24 hm5C_associated_SNPs_115067 0 0 0 0 2 RUFY4 chr2:218941150 3'AG 218941150 Downstream 41bp
chr2 218941190 218941190 1 + A G COAD 218941187 + 218941167 218941207 41 CCGGAAGGCTGAGGAGCAGGCCCAGCGCCAGGAGCAGCTGC CCGGAAGGCTGAGGAGCAGGCCCGGCGCCAGGAGCAGCTGC < 41bp 0.557652211241733 0.788003242284997 0.13306981 0.36500853 prediction 0.460702062086526 Functional Gain - RUFY4 ENSG00000188282 CDS Human protein_coding chr2:218941187 chr2:218941190 nonsynonymous SNV 0.090 0 24 hm5C_associated_SNPs_115067 0 0 0 0 2 RUFY4 chr2:218941256 5'GT 218941256 Upstream 67bp
chr10 119013947 119013947 1 + T A ESCA 119013943 + 119013923 119013963 41 CATGCTTGCCAGTGTCTACACAGATGATGAAGAGAGAGGCA CATGCTTGCCAGTGTCTACACAGAAGATGAAGAGAGAGGCA < 41bp 0.648464117510425 0.87881186983321 0.2895272 0.16939735 prediction 0.460695504645572 Functional Gain - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119013943 chr10:119013947 nonsynonymous SNV 0.992 3 25 hm5C_associated_SNPs_115069 0 0 0 0 2 SLC18A2 chr10:119013916 3'AG 119013916 Downstream 32bp
chr10 119013947 119013947 1 + T A ESCA 119013943 + 119013923 119013963 41 CATGCTTGCCAGTGTCTACACAGATGATGAAGAGAGAGGCA CATGCTTGCCAGTGTCTACACAGAAGATGAAGAGAGAGGCA < 41bp 0.648464117510425 0.87881186983321 0.2895272 0.16939735 prediction 0.460695504645572 Functional Gain - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119013943 chr10:119013947 nonsynonymous SNV 0.992 3 25 hm5C_associated_SNPs_115069 0 0 0 0 2 SLC18A2 chr10:119014008 5'GT 119014008 Upstream 62bp
chr20 30414612 30414612 1 + A G UCEC 30414609 + 30414589 30414629 41 TGTGCACACAGCATCGAGGGCGGAGAGCTCTTCGAGAGGAT TGTGCACACAGCATCGAGGGCGGGGAGCTCTTCGAGAGGAT < 41bp 0.481754153959643 0.730328131972155 0.29430157 0.493045 prediction 0.46065626394431 Functional Gain - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30414609 chr20:30414612 synonymous SNV . 0 24 hm5C_associated_SNPs_115075 0 0 1 0 1 MYLK2 chr20:30414600 3'AG 30414600 Downstream 13bp
chr2 58373520 58373520 1 + C T SKCM 58373519 + 58373499 58373539 41 AGGTTAATCGAAAAAAAAGTCCACAGTGAGAGAAGCGCTGA AGGTTAATCGAAAAAAAAGTCTACAGTGAGAGAAGCGCTGA < 41bp 0.547926521819234 0.778245565356819 0.08263531 0.29357177 prediction 0.460638087075169 Functional Gain - VRK2 ENSG00000028116 CDS Human protein_coding chr2:58373519 chr2:58373520 nonsynonymous SNV 0.309 0 22 hm5C_associated_SNPs_115079 0 0 1 0 2 VRK2 chr2:58373451 3'AG 58373451 Downstream 70bp
chr2 58373520 58373520 1 + C T SKCM 58373519 + 58373499 58373539 41 AGGTTAATCGAAAAAAAAGTCCACAGTGAGAGAAGCGCTGA AGGTTAATCGAAAAAAAAGTCTACAGTGAGAGAAGCGCTGA < 41bp 0.547926521819234 0.778245565356819 0.08263531 0.29357177 prediction 0.460638087075169 Functional Gain - VRK2 ENSG00000028116 CDS Human protein_coding chr2:58373519 chr2:58373520 nonsynonymous SNV 0.309 0 22 hm5C_associated_SNPs_115079 0 0 1 0 2 VRK2 chr2:58373609 5'GT 58373609 Upstream 90bp
chr17 53851150 53851150 1 + C T SKCM 53851149 + 53851129 53851169 41 GAAGATCCATGTGATCCTGGCCCGGAGCACCTCCATGCCTC GAAGATCCATGTGATCCTGGCTCGGAGCACCTCCATGCCTC < 41bp 0.560063042400896 0.790358509598815 0.051158458 0.10544789 prediction 0.460590934395837 Functional Gain - PCTP ENSG00000141179 CDS Human protein_coding chr17:53851149 chr17:53851150 synonymous SNV . 0 22 hm5C_associated_SNPs_115082 0 0 1 0 1 PCTP chr17:53851085 3'AG 53851085 Downstream 66bp
chr12 125550167 125550167 1 + C A UCEC 125550166 + 125550146 125550186 41 CGCCCCGGTCGGGAGGAGATCCTGGAGTGCCAGGTGATGTG CGCCCCGGTCGGGAGGAGATCATGGAGTGCCAGGTGATGTG < 41bp 0.472186222429264 0.730292050023021 0.4830699 0.5452586 prediction 0.460584100046042 Functional Gain - AACS ENSG00000081760 CDS Human protein_coding chr12:125550166 chr12:125550167 nonsynonymous SNV 0.931 0 22 hm5C_associated_SNPs_115084 0 0 1 3 1 AACS chr12:125550263 5'GT 125550263 Upstream 97bp
chr7 134722237 134722237 1 + T C COAD 134722235 + 134722215 134722255 41 CATAGTAGGAAAGAGAACATCTTCATGTATGGCTGTGATGG CATAGTAGGAAAGAGAACATCTCCATGTATGGCTGTGATGG < 41bp 0.418415120302029 0.730287797202279 0.16666499 0.9452506 prediction 0.460575594404558 Functional Gain - AGBL3 ENSG00000146856 CDS Human protein_coding chr7:134722235 chr7:134722237 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_115085 0 0 0 0 2 AGBL3 chr7:134722169 3'AG 134722169 Downstream 69bp
chr7 134722237 134722237 1 + T C COAD 134722235 + 134722215 134722255 41 CATAGTAGGAAAGAGAACATCTTCATGTATGGCTGTGATGG CATAGTAGGAAAGAGAACATCTCCATGTATGGCTGTGATGG < 41bp 0.418415120302029 0.730287797202279 0.16666499 0.9452506 prediction 0.460575594404558 Functional Gain - AGBL3 ENSG00000146856 CDS Human protein_coding chr7:134722235 chr7:134722237 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_115085 0 0 0 0 2 AGBL3 chr7:134722331 5'GT 134722331 Upstream 95bp
chr18 77105512 77105512 1 + C T SKCM 77105511 + 77105491 77105531 41 TGCTGCCGCTGCTCACCCACCCAGAAGGCCCGCATTGTGAC TGCTGCCGCTGCTCACCCACCTAGAAGGCCCGCATTGTGAC < 41bp 0.574508234414022 0.804792408623554 0.3683337 0.37463987 prediction 0.460568348419064 Functional Gain - ATP9B ENSG00000166377 CDS Human protein_coding chr18:77105511 chr18:77105512 stopgain 0.610 1 22 hm5C_associated_SNPs_115087 0 0 1 0 1 ATP9B chr18:77105572 5'GT 77105572 Upstream 61bp
chr6 28093561 28093561 1 - A G UCEC 28093563 - 28093543 28093583 41 CTCTCCAGATCCTCCAGTACCGTCACTGCCTCCTCTCCAGT CTCTCCAGATCCTCCAGTACCGCCACTGCCTCCTCTCCAGT < 41bp 0.601645711056137 0.831923520823965 0.03885284 0.08776128 prediction 0.460555619535656 Functional Gain - ZSCAN16 ENSG00000196812 CDS Human protein_coding chr6:28093563 chr6:28093561 nonsynonymous SNV 0.789 0 23 hm5C_associated_SNPs_115089 0 0 1 0 1 ZSCAN16 chr6:28093597 3'AG 28093597 Downstream 37bp
chr1 109271482 109271482 1 + C A LUAD 109271481 + 109271461 109271501 41 CACAGGCAGGACGGAGCCTGCCCAGCTACAGTGTGCCCCTG CACAGGCAGGACGGAGCCTGCACAGCTACAGTGTGCCCCTG < 41bp 0.5881394467548 0.818410881765939 0.035845876 0.16237831 prediction 0.460542870022278 Functional Gain - FNDC7 ENSG00000143107 CDS Human protein_coding chr1:109271481 chr1:109271482 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_115091 0 0 0 0 1 FNDC7 chr1:109271508 5'GT 109271508 Upstream 27bp
chr3 8590280 8590280 1 + C T SKCM 8590279 + 8590259 8590299 41 GCAGTACATGGAGCTCATCCCCAAGGAGAAGCAGCCAGTGA GCAGTACATGGAGCTCATCCCTAAGGAGAAGCAGCCAGTGA < 41bp 0.558555181844879 0.788825466658002 0.11928725 0.04069051 prediction 0.460540569626246 Functional Gain - LMCD1 ENSG00000071282 CDS Human protein_coding chr3:8590279 chr3:8590280 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_115092 0 0 0 0 1 LMCD1 chr3:8590254 3'AG 8590254 Downstream 27bp
chr15 49611947 49611947 1 + C T COAD 49611946 + 49611926 49611966 41 AACCAGAGCCACATGAGCTGCCGGGACATGTATGAGTGCAG AACCAGAGCCACATGAGCTGCTGGGACATGTATGAGTGCAG < 41bp 0.533718895683801 0.763977485825333 0.3287784 0.2849089 prediction 0.460517180283063 Functional Gain - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49611946 chr15:49611947 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_115100 0 0 1 0 1 GALK2 chr15:49612002 5'GT 49612002 Upstream 56bp
chr5 76621397 76621397 1 + A G COAD 76621394 + 76621374 76621414 41 TCTTTGCAAAGGAAGATAGTCAGAGCGATGGCTTCTGGTGG TCTTTGCAAAGGAAGATAGTCAGGGCGATGGCTTCTGGTGG < 41bp 0.523437089690461 0.753686104660741 0.91053647 0.9348062 prediction 0.460498029940561 Functional Gain - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76621394 chr5:76621397 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_115104 0 0 0 0 1 PDE8B chr5:76621364 3'AG 76621364 Downstream 34bp
chr19 54967417 54967417 1 + C T LUAD 54967416 + 54967396 54967436 41 AGGTCCCCGACGCGCCACTTCCGCAGAAGGTACTGAGGCTC AGGTCCCCGACGCGCCACTTCTGCAGAAGGTACTGAGGCTC < 41bp 0.580092080561024 0.810336684605914 0.33025026 0.29868245 prediction 0.460489208089779 Functional Gain - LENG8 ENSG00000167615 CDS Human protein_coding chr19:54967416 chr19:54967417 nonsynonymous SNV 0.863 4 22 hm5C_associated_SNPs_115107 0 0 0 0 1 LENG8 chr19:54967424 5'GT 54967424 Upstream 8bp
chr2 29136984 29136984 1 + T C STAD 29136982 + 29136962 29137002 41 TCGTCACTGATGTTCACTACCATCAGACCTCCTAATGAGAG TCGTCACTGATGTTCACTACCACCAGACCTCCTAATGAGAG < 41bp 0.62959843879695 0.859837936559427 0.10947013 0.06651083 prediction 0.460478995524955 Functional Gain - WDR43 ENSG00000163811 CDS Human protein_coding chr2:29136982 chr2:29136984 nonsynonymous SNV 0.967 1 23 hm5C_associated_SNPs_115108 0 0 1 0 2 WDR43 chr2:29136935 3'AG 29136935 Downstream 50bp
chr2 29136984 29136984 1 + T C STAD 29136982 + 29136962 29137002 41 TCGTCACTGATGTTCACTACCATCAGACCTCCTAATGAGAG TCGTCACTGATGTTCACTACCACCAGACCTCCTAATGAGAG < 41bp 0.62959843879695 0.859837936559427 0.10947013 0.06651083 prediction 0.460478995524955 Functional Gain - WDR43 ENSG00000163811 CDS Human protein_coding chr2:29136982 chr2:29136984 nonsynonymous SNV 0.967 1 23 hm5C_associated_SNPs_115108 0 0 1 0 2 WDR43 chr2:29137074 5'GT 29137074 Upstream 91bp
chr11 89891355 89891355 1 + C T SKCM 89891354 + 89891334 89891374 41 TTGAAGAAGGAGTGGGAATCCCCCGAATACCTGTACATCCC TTGAAGAAGGAGTGGGAATCCTCCGAATACCTGTACATCCC < 41bp 0.476833639389851 0.730239183261607 0.066064 0.060465783 prediction 0.460478366523215 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89891354 chr11:89891355 nonsynonymous SNV 0.984 3 22 hm5C_associated_SNPs_115110 0 0 0 0 2 NAALAD2 chr11:89891313 3'AG 89891313 Downstream 43bp
chr11 89891355 89891355 1 + C T SKCM 89891354 + 89891334 89891374 41 TTGAAGAAGGAGTGGGAATCCCCCGAATACCTGTACATCCC TTGAAGAAGGAGTGGGAATCCTCCGAATACCTGTACATCCC < 41bp 0.476833639389851 0.730239183261607 0.066064 0.060465783 prediction 0.460478366523215 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89891354 chr11:89891355 nonsynonymous SNV 0.984 3 22 hm5C_associated_SNPs_115110 0 0 0 0 2 NAALAD2 chr11:89891406 5'GT 89891406 Upstream 52bp
chr19 58988882 58988882 1 + C G rs553623828 58988878 + 58988858 58988898 41 AGGCAGTCCTGAGGAGGCCGCTGCCCTAGTCGAAGGACTGC AGGCAGTCCTGAGGAGGCCGCTGCGCTAGTCGAAGGACTGC < 41bp 0.430693682106103 0.730237367088861 0.18317214 0.27454162 prediction 0.460474734177721 Functional Gain - ZNF446 ENSG00000083838 CDS Human protein_coding chr19:58988878 chr19:58988882 synonymous SNV . 0 25 hm5C_associated_SNPs_115111 0 0 1 0 1 ZNF446 chr19:58988927 5'GT 58988927 Upstream 46bp
chrX 118151505 118151505 1 + C T UCEC 118151504 + 118151484 118151524 41 TTTCTCTGTTGCAGATGAACCCGAATGGCCCAGCCTGGTGC TTTCTCTGTTGCAGATGAACCTGAATGGCCCAGCCTGGTGC < 41bp 0.490217204953505 0.730232133916336 0.3441814 0.84916383 prediction 0.460464267832671 Functional Gain - LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118151504 chrX:118151505 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_115113 0 0 0 0 1 LONRF3 chrX:118151498 3'AG 118151498 Downstream 8bp
chr19 16797160 16797160 1 + C T SKCM 16797159 + 16797139 16797179 41 CTCCAGCAGACCCGCTGGCTCCCAGTGTCCAAAGCCAGCCT CTCCAGCAGACCCGCTGGCTCTCAGTGTCCAAAGCCAGCCT < 41bp 0.461274866013156 0.730228292421341 0.011862457 0.008133829 prediction 0.460456584842683 Functional Gain - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16797159 chr19:16797160 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_115114 0 0 0 0 2 TMEM38A chr19:16797099 3'AG 16797099 Downstream 62bp
chr19 16797160 16797160 1 + C T SKCM 16797159 + 16797139 16797179 41 CTCCAGCAGACCCGCTGGCTCCCAGTGTCCAAAGCCAGCCT CTCCAGCAGACCCGCTGGCTCTCAGTGTCCAAAGCCAGCCT < 41bp 0.461274866013156 0.730228292421341 0.011862457 0.008133829 prediction 0.460456584842683 Functional Gain - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16797159 chr19:16797160 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_115114 0 0 0 0 2 TMEM38A chr19:16797216 5'GT 16797216 Upstream 57bp
chr6 34838841 34838841 1 + C T rs200662691 34838840 + 34838820 34838860 41 TCTTGGAGGATGAGGAGATCCCGGTGGTAGTCCCCATGCAG TCTTGGAGGATGAGGAGATCCTGGTGGTAGTCCCCATGCAG < 41bp 0.485631515307043 0.73022825616527 0.89144844 0.85960686 prediction 0.46045651233054 Functional Gain - UHRF1BP1 ENSG00000065060 CDS Human protein_coding chr6:34838840 chr6:34838841 nonsynonymous SNV 0.957 3 22 hm5C_associated_SNPs_115115 0 0 1 0 1 UHRF1BP1 chr6:34838893 5'GT 34838893 Upstream 53bp
chr10 12191933 12191933 1 + C T rs10466280 12191932 + 12191912 12191952 41 GGACCCTGCAGAAATGGGTGCCGGAATCTGTCTCCTGATCA GGACCCTGCAGAAATGGGTGCTGGAATCTGTCTCCTGATCA < 41bp 0.545126353272822 0.775348121967598 0.43958992 0.26290584 prediction 0.460443537389552 Functional Gain - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191932 chr10:12191933 synonymous SNV . 0 22 hm5C_associated_SNPs_115117 0 0 1 0 1 SEC61A2 chr10:12191960 5'GT 12191960 Upstream 28bp
chr7 73969778 73969778 1 + C T UCEC 73969777 + 73969757 73969797 41 CCTGCCCCCAGAGAGGGATTCCGGGGACCCTCTGGTGGACG CCTGCCCCCAGAGAGGGATTCTGGGGACCCTCTGGTGGACG < 41bp 0.553945860668625 0.784161821731894 0.91184556 0.9016098 prediction 0.460431922126537 Functional Gain - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73969777 chr7:73969778 synonymous SNV . 0 22 hm5C_associated_SNPs_115120 0 0 1 0 3 GTF2IRD1 chr7:73969723 3'AG 73969723 Downstream 56bp
chr7 73969778 73969778 1 + C T UCEC 73969777 + 73969757 73969797 41 CCTGCCCCCAGAGAGGGATTCCGGGGACCCTCTGGTGGACG CCTGCCCCCAGAGAGGGATTCTGGGGACCCTCTGGTGGACG < 41bp 0.553945860668625 0.784161821731894 0.91184556 0.9016098 prediction 0.460431922126537 Functional Gain - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73969777 chr7:73969778 synonymous SNV . 0 22 hm5C_associated_SNPs_115120 0 0 1 0 3 GTF2IRD1 chr7:73969768 3'AG 73969768 Downstream 11bp
chr7 73969778 73969778 1 + C T UCEC 73969777 + 73969757 73969797 41 CCTGCCCCCAGAGAGGGATTCCGGGGACCCTCTGGTGGACG CCTGCCCCCAGAGAGGGATTCTGGGGACCCTCTGGTGGACG < 41bp 0.553945860668625 0.784161821731894 0.91184556 0.9016098 prediction 0.460431922126537 Functional Gain - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73969777 chr7:73969778 synonymous SNV . 0 22 hm5C_associated_SNPs_115120 0 0 1 0 3 GTF2IRD1 chr7:73969824 5'GT 73969824 Upstream 47bp
chrX 47058240 47058240 1 + C T HNSC 47058239 + 47058219 47058259 41 GTCCAAGAAACGTCGCGTGTCCGGGCCTGATCCAAAGCCGG GTCCAAGAAACGTCGCGTGTCTGGGCCTGATCCAAAGCCGG < 41bp 0.506308662194403 0.73651802726999 0.3329241 0.27150112 prediction 0.460418730151174 Functional Gain - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47058239 chrX:47058240 synonymous SNV . 0 22 hm5C_associated_SNPs_115122 0 0 1 0 2 UBA1 chrX:47058202 3'AG 47058202 Downstream 39bp
chrX 47058240 47058240 1 + C T HNSC 47058239 + 47058219 47058259 41 GTCCAAGAAACGTCGCGTGTCCGGGCCTGATCCAAAGCCGG GTCCAAGAAACGTCGCGTGTCTGGGCCTGATCCAAAGCCGG < 41bp 0.506308662194403 0.73651802726999 0.3329241 0.27150112 prediction 0.460418730151174 Functional Gain - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47058239 chrX:47058240 synonymous SNV . 0 22 hm5C_associated_SNPs_115122 0 0 1 0 2 UBA1 chrX:47058318 5'GT 47058318 Upstream 79bp
chr9 133284220 133284220 1 + C A rs145759105 133284219 + 133284199 133284239 41 ACTGTGTGGTGCGTGGAGACCCAGTGCCGGACATCCACTGG ACTGTGTGGTGCGTGGAGACCAAGTGCCGGACATCCACTGG < 41bp 0.561916245999802 0.792123800037352 0.28363863 0.3316679 prediction 0.460415108075101 Functional Gain - HMCN2 ENSG00000215428;ENSG00000148357 intergenic Human other chr9:133284219 chr9:133284220 . 0.462 2 22 hm5C_associated_SNPs_115124 0 0 0 0 1 HMCN2 chr9:133284130 3'AG 133284130 Downstream 91bp
chr3 8578959 8578959 1 + A G STAD 8578956 + 8578936 8578976 41 ATCGGAAAATTGGCCGCTTGCTGATGGACTCCAAGTATTCC ATCGGAAAATTGGCCGCTTGCTGGTGGACTCCAAGTATTCC < 41bp 0.513225502051546 0.743432802761063 0.0023972392 0.006063193 prediction 0.460414601419035 Functional Gain - LMCD1 ENSG00000071282 CDS Human protein_coding chr3:8578956 chr3:8578959 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_115125 0 0 0 0 1 LMCD1 chr3:8578871 3'AG 8578871 Downstream 89bp
chr7 6062975 6062975 1 + C T UCEC 6062974 + 6062954 6062994 41 TTCAGCATCCAGACGATGTGCCCCATCGAAGGCGAAGGGAA TTCAGCATCCAGACGATGTGCTCCATCGAAGGCGAAGGGAA < 41bp 0.579782598596136 0.809979524688581 0.012142569 0.87615657 prediction 0.46039385218489 Functional Gain - AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6062974 chr7:6062975 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_115127 0 0 1 0 1 AIMP2 chr7:6062934 3'AG 6062934 Downstream 42bp
chr7 73474352 73474352 1 + C G LUSC 73474351 + 73474331 73474371 41 TCCTGGCGTTGGCGTGGCTCCCGGCATTGGCCCTGGTGGAG TCCTGGCGTTGGCGTGGCTCCGGGCATTGGCCCTGGTGGAG < 41bp 0.446135358334611 0.730193492769105 0.8865599 0.89251494 prediction 0.460386985538211 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73474351 chr7:73474352 synonymous SNV . 0 22 hm5C_associated_SNPs_115129 0 0 0 0 2 ELN chr7:73474321 3'AG 73474321 Downstream 32bp
chr7 73474352 73474352 1 + C G LUSC 73474351 + 73474331 73474371 41 TCCTGGCGTTGGCGTGGCTCCCGGCATTGGCCCTGGTGGAG TCCTGGCGTTGGCGTGGCTCCGGGCATTGGCCCTGGTGGAG < 41bp 0.446135358334611 0.730193492769105 0.8865599 0.89251494 prediction 0.460386985538211 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73474351 chr7:73474352 synonymous SNV . 0 22 hm5C_associated_SNPs_115129 0 0 0 0 2 ELN chr7:73474377 5'GT 73474377 Upstream 26bp
chr11 70189923 70189923 1 + C T SKCM 70189922 + 70189902 70189942 41 GCTCAGTTGACCTGCTATCGCCCAGCGGGCAGGCCGACGCG GCTCAGTTGACCTGCTATCGCTCAGCGGGCAGGCCGACGCG < 41bp 0.559784532813007 0.789975816437483 0.21996024 0.06514487 prediction 0.460382567248952 Functional Gain - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70189922 chr11:70189923 nonsynonymous SNV 0.112 3 22 hm5C_associated_SNPs_115131 0 0 1 0 1 PPFIA1 chr11:70189998 5'GT 70189998 Upstream 76bp
chr22 25855404 25855404 1 + T C STAD 25855402 + 25855382 25855422 41 GGTGGGTTGGCTACTAGTACCCTGGCTACCGTGGGCTGCAG GGTGGGTTGGCTACTAGTACCCCGGCTACCGTGGGCTGCAG < 41bp 0.555833193312914 0.786010632697087 0.34003088 0.51459515 prediction 0.460354878768346 Functional Gain - CRYBB2P1 ENSG00000100058 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:25855402 chr22:25855404 . . 0 23 hm5C_associated_SNPs_115138 0 0 1 0 2 CRYBB2P1 chr22:25855383 3'AG 25855383 Downstream 22bp
chr22 25855404 25855404 1 + T C STAD 25855402 + 25855382 25855422 41 GGTGGGTTGGCTACTAGTACCCTGGCTACCGTGGGCTGCAG GGTGGGTTGGCTACTAGTACCCCGGCTACCGTGGGCTGCAG < 41bp 0.555833193312914 0.786010632697087 0.34003088 0.51459515 prediction 0.460354878768346 Functional Gain - CRYBB2P1 ENSG00000100058 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:25855402 chr22:25855404 . . 0 23 hm5C_associated_SNPs_115138 0 0 1 0 2 CRYBB2P1 chr22:25855482 5'GT 25855482 Upstream 79bp
chr11 64022382 64022382 1 + C T SKCM 64022381 + 64022361 64022401 41 CCTACTCAGGACCCCAAGATCCGGGAAGTTCTGGGCTTTGG CCTACTCAGGACCCCAAGATCTGGGAAGTTCTGGGCTTTGG < 41bp 0.534834518315457 0.765008486361436 0.92512935 0.80141664 prediction 0.460347936091957 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022381 chr11:64022382 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_115139 0 0 0 0 1 PLCB3 chr11:64022370 3'AG 64022370 Downstream 13bp
chr12 106715424 106715424 1 + C G LUAD 106715423 + 106715403 106715443 41 CGATGGGAAAGCTGTGTGCTCCCGTGCGAGATAATGATATC CGATGGGAAAGCTGTGTGCTCGCGTGCGAGATAATGATATC < 41bp 0.410086430519256 0.730171430687998 0.082526386 0.34542722 prediction 0.460342861375995 Functional Gain - TCP11L2 ENSG00000166046 CDS Human protein_coding chr12:106715423 chr12:106715424 nonsynonymous SNV 0.963 4 22 hm5C_associated_SNPs_115141 0 0 0 0 1 TCP11L2 chr12:106715484 5'GT 106715484 Upstream 61bp
chr7 140379030 140379030 1 + C T SKCM 140379029 + 140379009 140379049 41 AATGTGAAAGCCGTCAAGTTCCCCACCCCTCTGCGCCCCTT AATGTGAAAGCCGTCAAGTTCTCCACCCCTCTGCGCCCCTT < 41bp 0.61188633386722 0.842057658325548 0.02016595 0.8235871 prediction 0.460342648916656 Functional Gain - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140379029 chr7:140379030 nonsynonymous SNV 0.908 4 22 hm5C_associated_SNPs_115142 0 0 1 0 2 ADCK2 chr7:140378955 3'AG 140378955 Downstream 76bp
chr7 140379030 140379030 1 + C T SKCM 140379029 + 140379009 140379049 41 AATGTGAAAGCCGTCAAGTTCCCCACCCCTCTGCGCCCCTT AATGTGAAAGCCGTCAAGTTCTCCACCCCTCTGCGCCCCTT < 41bp 0.61188633386722 0.842057658325548 0.02016595 0.8235871 prediction 0.460342648916656 Functional Gain - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140379029 chr7:140379030 nonsynonymous SNV 0.908 4 22 hm5C_associated_SNPs_115142 0 0 1 0 2 ADCK2 chr7:140379083 5'GT 140379083 Upstream 54bp
chr9 103035265 103035265 1 + C A GBM 103035261 + 103035241 103035281 41 ACATCGCCGCCTTCAAAATCCAAGCTGTCTACAAAGGGTAC ACATCGCCGCCTTCAAAATCCAAGATGTCTACAAAGGGTAC < 41bp 0.313426438454603 0.730166380510004 0.25249362 0.22741696 prediction 0.460332761020009 Functional Gain - INVS ENSG00000119509 CDS Human protein_coding chr9:103035261 chr9:103035265 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_115143 0 0 1 0 1 INVS chr9:103035358 5'GT 103035358 Upstream 94bp
chr19 42352590 42352590 1 + C A HNSC 42352586 + 42352566 42352606 41 AGTCCTGCTGGCACCGACACCCCCCGGGAAGGTAAGGAGAG AGTCCTGCTGGCACCGACACCCCCAGGGAAGGTAAGGAGAG < 41bp 0.307279687697414 0.730163809073396 0.07891253 0.2289846 prediction 0.460327618146791 Functional Gain - DMRTC2 ENSG00000142025 CDS Human protein_coding chr19:42352586 chr19:42352590 synonymous SNV . 0 25 hm5C_associated_SNPs_115144 0 0 0 0 2 DMRTC2 chr19:42352520 3'AG 42352520 Downstream 71bp
chr19 42352590 42352590 1 + C A HNSC 42352586 + 42352566 42352606 41 AGTCCTGCTGGCACCGACACCCCCCGGGAAGGTAAGGAGAG AGTCCTGCTGGCACCGACACCCCCAGGGAAGGTAAGGAGAG < 41bp 0.307279687697414 0.730163809073396 0.07891253 0.2289846 prediction 0.460327618146791 Functional Gain - DMRTC2 ENSG00000142025 CDS Human protein_coding chr19:42352586 chr19:42352590 synonymous SNV . 0 25 hm5C_associated_SNPs_115144 0 0 0 0 2 DMRTC2 chr19:42352596 5'GT 42352596 Upstream 7bp
chr6 36020527 36020527 1 + C T BLCA 36020526 + 36020506 36020546 41 TGTGGCAGTGAAGAAGCTCTCCAGACCATTTCAGTCCATCA TGTGGCAGTGAAGAAGCTCTCTAGACCATTTCAGTCCATCA < 41bp 0.564486760624834 0.79465033684832 0.71637654 0.4450447 prediction 0.460327152446971 Functional Gain - MAPK14 ENSG00000112062 CDS Human protein_coding chr6:36020526 chr6:36020527 synonymous SNV . 0 22 hm5C_associated_SNPs_115145 0 0 1 0 2 MAPK14 chr6:36020476 3'AG 36020476 Downstream 52bp
chr6 36020527 36020527 1 + C T BLCA 36020526 + 36020506 36020546 41 TGTGGCAGTGAAGAAGCTCTCCAGACCATTTCAGTCCATCA TGTGGCAGTGAAGAAGCTCTCTAGACCATTTCAGTCCATCA < 41bp 0.564486760624834 0.79465033684832 0.71637654 0.4450447 prediction 0.460327152446971 Functional Gain - MAPK14 ENSG00000112062 CDS Human protein_coding chr6:36020526 chr6:36020527 synonymous SNV . 0 22 hm5C_associated_SNPs_115145 0 0 1 0 2 MAPK14 chr6:36020605 5'GT 36020605 Upstream 79bp
chr19 7518523 7518523 1 + C T COAD 7518522 + 7518502 7518542 41 CTCAAGAACGGGCTCACCTTCCGCAAGGAAGACATGCTTCA CTCAAGAACGGGCTCACCTTCTGCAAGGAAGACATGCTTCA < 41bp 0.454777423773688 0.730156587381176 0.18726042 0.3736053 prediction 0.460313174762352 Functional Gain - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7518522 chr19:7518523 nonsynonymous SNV 0.990 0 22 hm5C_associated_SNPs_115147 0 0 0 0 1 ARHGEF18 chr19:7518601 5'GT 7518601 Upstream 79bp
chr9 36121578 36121578 1 + C T STAD 36121577 + 36121557 36121597 41 CTGGAAATACTTCAGAAAATCCGCATGCACGTGTCTGTCCC CTGGAAATACTTCAGAAAATCTGCATGCACGTGTCTGTCCC < 41bp 0.567407823354229 0.797559084985113 0.29622233 0.88654757 prediction 0.460302523261769 Functional Gain - RECK ENSG00000122707 CDS Human protein_coding chr9:36121577 chr9:36121578 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_115148 0 0 0 1 1 RECK chr9:36121530 3'AG 36121530 Downstream 49bp
chr3 129247931 129247931 1 + C A LUAD 129247930 + 129247910 129247950 41 TTGGAGGGCTTCTTTGCCACCCTGGGCGGTATGAGCCGGGT TTGGAGGGCTTCTTTGCCACCATGGGCGGTATGAGCCGGGT < 41bp 0.48186239338974 0.730148571306506 0.22054577 0.4800689 prediction 0.460297142613013 Functional Gain - RHO ENSG00000163914 CDS Human protein_coding chr3:129247930 chr3:129247931 nonsynonymous SNV 0.983 2 22 hm5C_associated_SNPs_115150 0 0 0 0 1 RHO chr3:129247937 5'GT 129247937 Upstream 7bp
chr12 123342726 123342726 1 + C A UCEC 123342725 + 123342705 123342745 41 GCGGGGCGCTGCTGCCGAGGCCGCGGGCATCCTGCAGGATG GCGGGGCGCTGCTGCCGAGGCAGCGGGCATCCTGCAGGATG < 41bp 0.473816509132753 0.730135717471108 0.72306156 0.67644835 prediction 0.460271434942217 Functional Gain - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123342725 chr12:123342726 synonymous SNV . 0 22 hm5C_associated_SNPs_115156 0 0 1 0 2 HIP1R chr12:123342649 3'AG 123342649 Downstream 78bp
chr12 123342726 123342726 1 + C A UCEC 123342725 + 123342705 123342745 41 GCGGGGCGCTGCTGCCGAGGCCGCGGGCATCCTGCAGGATG GCGGGGCGCTGCTGCCGAGGCAGCGGGCATCCTGCAGGATG < 41bp 0.473816509132753 0.730135717471108 0.72306156 0.67644835 prediction 0.460271434942217 Functional Gain - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123342725 chr12:123342726 synonymous SNV . 0 22 hm5C_associated_SNPs_115156 0 0 1 0 2 HIP1R chr12:123342796 5'GT 123342796 Upstream 71bp
chr18 12012173 12012173 1 + C T SKCM 12012172 + 12012152 12012192 41 TCTATTTTCCTTTGCAGATTCCCGACTGTGGCGGTTAGCAT TCTATTTTCCTTTGCAGATTCTCGACTGTGGCGGTTAGCAT < 41bp 0.585222379266524 0.815346204053087 0.11862156 0.317206 prediction 0.460247649573126 Functional Gain - IMPA2 ENSG00000141401 CDS Human protein_coding chr18:12012172 chr18:12012173 nonsynonymous SNV 0.435 4 22 hm5C_associated_SNPs_115162 0 0 1 0 2 IMPA2 chr18:12012169 3'AG 12012169 Downstream 5bp
chr18 12012173 12012173 1 + C T SKCM 12012172 + 12012152 12012192 41 TCTATTTTCCTTTGCAGATTCCCGACTGTGGCGGTTAGCAT TCTATTTTCCTTTGCAGATTCTCGACTGTGGCGGTTAGCAT < 41bp 0.585222379266524 0.815346204053087 0.11862156 0.317206 prediction 0.460247649573126 Functional Gain - IMPA2 ENSG00000141401 CDS Human protein_coding chr18:12012172 chr18:12012173 nonsynonymous SNV 0.435 4 22 hm5C_associated_SNPs_115162 0 0 1 0 2 IMPA2 chr18:12012214 5'GT 12012214 Upstream 42bp
chr7 134849203 134849203 1 + C T SKCM 134849202 + 134849182 134849222 41 AGGGCAGTAGAGATGGCCGGCCCAAGGCCTCGGTGGCGCGA AGGGCAGTAGAGATGGCCGGCTCAAGGCCTCGGTGGCGCGA < 41bp 0.514659571465758 0.74476575016354 0.3847464 0.48188162 prediction 0.460212357395563 Functional Gain - TMEM140 ENSG00000146859 CDS Human protein_coding chr7:134849202 chr7:134849203 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_115167 0 0 1 0 1 TMEM140 chr7:134849170 3'AG 134849170 Downstream 34bp
chr6 158353276 158353276 1 + C T SKCM 158353275 + 158353255 158353295 41 AAAGGCCTTGCAGAGTTTGGCCACAGTGTTCAGTTCCAGTG AAAGGCCTTGCAGAGTTTGGCTACAGTGTTCAGTTCCAGTG < 41bp 0.466342864369562 0.730103795916425 0.3001009 0.36916292 prediction 0.460207591832851 Functional Gain - SNX9 ENSG00000130340 CDS Human protein_coding chr6:158353275 chr6:158353276 synonymous SNV . 0 22 hm5C_associated_SNPs_115168 0 0 1 0 2 SNX9 chr6:158353227 3'AG 158353227 Downstream 50bp
chr6 158353276 158353276 1 + C T SKCM 158353275 + 158353255 158353295 41 AAAGGCCTTGCAGAGTTTGGCCACAGTGTTCAGTTCCAGTG AAAGGCCTTGCAGAGTTTGGCTACAGTGTTCAGTTCCAGTG < 41bp 0.466342864369562 0.730103795916425 0.3001009 0.36916292 prediction 0.460207591832851 Functional Gain - SNX9 ENSG00000130340 CDS Human protein_coding chr6:158353275 chr6:158353276 synonymous SNV . 0 22 hm5C_associated_SNPs_115168 0 0 1 0 2 SNX9 chr6:158353304 5'GT 158353304 Upstream 29bp
chrX 209836 209836 1 + C G rs150920187 209835 + 209815 209855 41 GTGGGGAAACAGGGTGAAGACCGAGGCCCTCATCCGATACC GTGGGGAAACAGGGTGAAGACGGAGGCCCTCATCCGATACC < 41bp 0.406036196835333 0.730101537598988 0.9118173 0.91800785 prediction 0.460203075197976 Functional Gain - PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:209835 chrX:209836 synonymous SNV . 0 22 hm5C_associated_SNPs_115170 0 0 1 0 1 PLCXD1 chrX:209885 5'GT 209885 Upstream 50bp
chr7 86794313 86794313 1 + T G SKCM 86794310 + 86794290 86794330 41 AACAGTAGAAACTGTGAACTCTGTGACTTTGACTCAGGACA AACAGTAGAAACTGTGAACTCTGGGACTTTGACTCAGGACA < 41bp 0.40092813084279 0.730085553750376 0.16065148 0.322104 prediction 0.460171107500753 Functional Gain - DMTF1 ENSG00000135164 CDS Human protein_coding chr7:86794310 chr7:86794313 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_115175 0 0 1 1 2 DMTF1 chr7:86794250 3'AG 86794250 Downstream 64bp
chr7 86794313 86794313 1 + T G SKCM 86794310 + 86794290 86794330 41 AACAGTAGAAACTGTGAACTCTGTGACTTTGACTCAGGACA AACAGTAGAAACTGTGAACTCTGGGACTTTGACTCAGGACA < 41bp 0.40092813084279 0.730085553750376 0.16065148 0.322104 prediction 0.460171107500753 Functional Gain - DMTF1 ENSG00000135164 CDS Human protein_coding chr7:86794310 chr7:86794313 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_115175 0 0 1 1 2 DMTF1 chr7:86794366 5'GT 86794366 Upstream 54bp
chrX 17072998 17072998 1 + A G UCEC 17072995 + 17072975 17073015 41 AGTTCTGTGCTGCGTTTCATCTCATTGTGGCTCGGAAGAAC AGTTCTGTGCTGCGTTTCATCTCGTTGTGGCTCGGAAGAAC < 41bp 0.543405701480083 0.77348285279724 0.04621479 0.038383693 prediction 0.460154302634313 Functional Gain - REPS2 ENSG00000169891 CDS Human protein_coding chrX:17072995 chrX:17072998 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_115178 0 0 0 0 2 REPS2 chrX:17072931 3'AG 17072931 Downstream 68bp
chrX 17072998 17072998 1 + A G UCEC 17072995 + 17072975 17073015 41 AGTTCTGTGCTGCGTTTCATCTCATTGTGGCTCGGAAGAAC AGTTCTGTGCTGCGTTTCATCTCGTTGTGGCTCGGAAGAAC < 41bp 0.543405701480083 0.77348285279724 0.04621479 0.038383693 prediction 0.460154302634313 Functional Gain - REPS2 ENSG00000169891 CDS Human protein_coding chrX:17072995 chrX:17072998 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_115178 0 0 0 0 2 REPS2 chrX:17073073 5'GT 17073073 Upstream 76bp
chr5 79355630 79355630 1 + C T LUAD 79355629 + 79355609 79355649 41 TGTGACTCCAACCCATGTTTCCGAGGTGTCCAATGTACCGA TGTGACTCCAACCCATGTTTCTGAGGTGTCCAATGTACCGA < 41bp 0.544292649280204 0.774362380314795 0.9198433 0.7700691 prediction 0.460139462069182 Functional Gain - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79355629 chr5:79355630 stopgain 0.585 1 22 hm5C_associated_SNPs_115180 0 0 0 0 1 THBS4 chr5:79355728 5'GT 79355728 Upstream 99bp
chr1 158151917 158151917 1 + C A LUSC 158151916 + 158151896 158151936 41 GCATTTCAAGGAAAAGATATCCTGAGTTTCCAAGGAACTTC GCATTTCAAGGAAAAGATATCATGAGTTTCCAAGGAACTTC < 41bp 0.460098644261534 0.730066770223047 0.21274951 0.32597655 prediction 0.460133540446095 Functional Gain - CD1D ENSG00000158473 CDS Human protein_coding chr1:158151916 chr1:158151917 nonsynonymous SNV 0.035 0 22 hm5C_associated_SNPs_115183 0 0 0 0 1 CD1D chr1:158151822 3'AG 158151822 Downstream 96bp
chr1 165624646 165624646 1 + C A UCEC 165624642 + 165624622 165624662 41 CGAGGAGCCCTGGGGTCCATCGCCCTCCTGGGCTTGGTGGG CGAGGAGCCCTGGGGTCCATCGCCATCCTGGGCTTGGTGGG < 41bp 0.704304883526334 0.934366565936083 0.26457208 0.86664206 prediction 0.460123364819498 Functional Gain - MGST3 ENSG00000143198 CDS Human protein_coding chr1:165624642 chr1:165624646 nonsynonymous SNV 0.829 1 25 hm5C_associated_SNPs_115186 0 0 1 0 1 MGST3 chr1:165624605 3'AG 165624605 Downstream 42bp
chr22 25623911 25623911 1 + C T BLCA 25623910 + 25623890 25623930 41 TGGGACTCATGGACCAGCAGCCGAAGGACGGACTCCCTCAG TGGGACTCATGGACCAGCAGCTGAAGGACGGACTCCCTCAG < 41bp 0.563082654042566 0.793143375796154 0.53201646 0.8792532 prediction 0.460121443507177 Functional Gain - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25623910 chr22:25623911 stopgain 0.997 1 22 hm5C_associated_SNPs_115187 0 0 0 0 2 CRYBB2 chr22:25623820 3'AG 25623820 Downstream 92bp
chr22 25623911 25623911 1 + C T BLCA 25623910 + 25623890 25623930 41 TGGGACTCATGGACCAGCAGCCGAAGGACGGACTCCCTCAG TGGGACTCATGGACCAGCAGCTGAAGGACGGACTCCCTCAG < 41bp 0.563082654042566 0.793143375796154 0.53201646 0.8792532 prediction 0.460121443507177 Functional Gain - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25623910 chr22:25623911 stopgain 0.997 1 22 hm5C_associated_SNPs_115187 0 0 0 0 2 CRYBB2 chr22:25623952 5'GT 25623952 Upstream 42bp
chr17 7345999 7345999 1 + T C HNSC 7345997 + 7345977 7346017 41 CCTCTGCTCTCTACCGCCAGCGTCGTTCTGGCCGGGCCTGG CCTCTGCTCTCTACCGCCAGCGCCGTTCTGGCCGGGCCTGG < 41bp 0.451878394324786 0.730058541219045 0.33331442 0.29640323 prediction 0.460117082438091 Functional Gain - FGF11 ENSG00000161958 CDS Human protein_coding chr17:7345997 chr17:7345999 synonymous SNV . 0 23 hm5C_associated_SNPs_115188 0 0 0 0 1 FGF11 chr17:7345913 3'AG 7345913 Downstream 87bp
chr17 56271378 56271378 1 + C T COAD 56271377 + 56271357 56271397 41 TCTGGCTCGCTGGCTGCCCGCCGAGTATGAGGATGGGCTGT TCTGGCTCGCTGGCTGCCCGCTGAGTATGAGGATGGGCTGT < 41bp 0.505183277380065 0.735240598589193 0.6670143 0.33088732 prediction 0.460114642418255 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56271377 chr17:56271378 synonymous SNV . 0 22 hm5C_associated_SNPs_115189 0 0 0 0 2 EPX chr17:56271324 3'AG 56271324 Downstream 55bp
chr17 56271378 56271378 1 + C T COAD 56271377 + 56271357 56271397 41 TCTGGCTCGCTGGCTGCCCGCCGAGTATGAGGATGGGCTGT TCTGGCTCGCTGGCTGCCCGCTGAGTATGAGGATGGGCTGT < 41bp 0.505183277380065 0.735240598589193 0.6670143 0.33088732 prediction 0.460114642418255 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56271377 chr17:56271378 synonymous SNV . 0 22 hm5C_associated_SNPs_115189 0 0 0 0 2 EPX chr17:56271453 5'GT 56271453 Upstream 76bp
chr2 71909676 71909676 1 + T A KIRC 71909672 + 71909652 71909692 41 GCTTCCAGGCGCCCCGACACCTCCTTCCTGTGGTTTACCTC GCTTCCAGGCGCCCCGACACCTCCATCCTGTGGTTTACCTC < 41bp 0.427811874413728 0.730054388478026 0.03184998 0.9545475 prediction 0.460108776956051 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71909672 chr2:71909676 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_115190 0 0 0 0 1 DYSF chr2:71909660 3'AG 71909660 Downstream 17bp
chr16 68330381 68330381 1 + C T rs193099058 68330380 + 68330360 68330400 41 GTTGTTGGACAGCTCTACCTCCGCTGGAAGGAGCCCAAGCG GTTGTTGGACAGCTCTACCTCTGCTGGAAGGAGCCCAAGCG < 41bp 0.476659487239061 0.730052090387684 0.3691427 0.30244887 prediction 0.460104180775367 Functional Gain - SLC7A6 ENSG00000103064 CDS Human protein_coding chr16:68330380 chr16:68330381 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_115191 0 0 1 0 1 SLC7A6 chr16:68330416 5'GT 68330416 Upstream 36bp
chr1 201282447 201282447 1 + C T COAD 201282446 + 201282426 201282466 41 ATGCAGAAAATCAAGGCGAGCCGCAGTGAGCCCGACCTCTA ATGCAGAAAATCAAGGCGAGCTGCAGTGAGCCCGACCTCTA < 41bp 0.573660759500017 0.803708426057659 0.45336163 0.3741958 prediction 0.460095333115284 Functional Gain - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201282446 chr1:201282447 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_115193 0 0 0 0 1 PKP1 chr1:201282450 5'GT 201282450 Upstream 4bp
chr19 17337659 17337659 1 + C A rs200297320 17337658 + 17337638 17337678 41 GGGGGCACCTGCATACTCACCCGCCTGGGCCTGGGCCCCCG GGGGGCACCTGCATACTCACCAGCCTGGGCCTGGGCCCCCG < 41bp 0.559657737322071 0.789700648201609 0.19923407 0.54243594 prediction 0.460085821759075 Functional Gain - OCEL1 ENSG00000099330 CDS Human protein_coding chr19:17337658 chr19:17337659 nonsynonymous SNV 0.201 2 22 hm5C_associated_SNPs_115195 0 0 1 0 1 OCEL1 chr19:17337678 5'GT 17337678 Upstream 20bp
chr7 134222404 134222404 1 + C T UCEC 134222403 + 134222383 134222423 41 TGCTGCAAAGCACAAAAAAACCGCAGCCCAGGTGCCATATT TGCTGCAAAGCACAAAAAAACTGCAGCCCAGGTGCCATATT < 41bp 0.55965428628517 0.789688695357036 0.14819938 0.22436187 prediction 0.460068818143733 Functional Gain - AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134222403 chr7:134222404 synonymous SNV . 0 22 hm5C_associated_SNPs_115197 0 0 0 0 2 AKR1B10 chr7:134222332 3'AG 134222332 Downstream 73bp
chr7 134222404 134222404 1 + C T UCEC 134222403 + 134222383 134222423 41 TGCTGCAAAGCACAAAAAAACCGCAGCCCAGGTGCCATATT TGCTGCAAAGCACAAAAAAACTGCAGCCCAGGTGCCATATT < 41bp 0.55965428628517 0.789688695357036 0.14819938 0.22436187 prediction 0.460068818143733 Functional Gain - AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134222403 chr7:134222404 synonymous SNV . 0 22 hm5C_associated_SNPs_115197 0 0 0 0 2 AKR1B10 chr7:134222413 5'GT 134222413 Upstream 10bp
chr10 5951235 5951235 1 + C T COAD 5951234 + 5951214 5951254 41 CGTGTGTGCGGCAACACCTCCCCGACCTCTACGCTGCTGCC CGTGTGTGCGGCAACACCTCCTCGACCTCTACGCTGCTGCC < 41bp 0.58313760715284 0.813166409678353 0.38022462 0.7750406 prediction 0.460057605051027 Functional Gain - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5951234 chr10:5951235 nonsynonymous SNV 0.051 1 22 hm5C_associated_SNPs_115198 0 0 1 0 1 FBXO18 chr10:5951257 5'GT 5951257 Upstream 23bp
chr4 184233578 184233578 1 + C T SKCM 184233577 + 184233557 184233597 41 TCCAAGGACGTGTGTCGGCTCCGGGAGCAGAGCCAGAAGGT TCCAAGGACGTGTGTCGGCTCTGGGAGCAGAGCCAGAAGGT < 41bp 0.490540736928952 0.730028561172082 0.92793 0.91234034 prediction 0.460057122344165 Functional Gain - WWC2 ENSG00000151718 CDS Human protein_coding chr4:184233577 chr4:184233578 nonsynonymous SNV 0.905 4 22 hm5C_associated_SNPs_115199 0 0 1 0 2 WWC2 chr4:184233494 3'AG 184233494 Downstream 85bp
chr4 184233578 184233578 1 + C T SKCM 184233577 + 184233557 184233597 41 TCCAAGGACGTGTGTCGGCTCCGGGAGCAGAGCCAGAAGGT TCCAAGGACGTGTGTCGGCTCTGGGAGCAGAGCCAGAAGGT < 41bp 0.490540736928952 0.730028561172082 0.92793 0.91234034 prediction 0.460057122344165 Functional Gain - WWC2 ENSG00000151718 CDS Human protein_coding chr4:184233577 chr4:184233578 nonsynonymous SNV 0.905 4 22 hm5C_associated_SNPs_115199 0 0 1 0 2 WWC2 chr4:184233621 5'GT 184233621 Upstream 44bp
chrX 152770114 152770114 1 + T A LUAD 152770110 + 152770090 152770130 41 ATGTGGCCCCTGTGGCGCCTCGTGTCTCTGCTGGCCCTGAG ATGTGGCCCCTGTGGCGCCTCGTGACTCTGCTGGCCCTGAG < 41bp 0.638952706859881 0.868978624508882 0.13737446 0.17894259 prediction 0.460051835298001 Functional Gain - BGN ENSG00000182492 CDS Human protein_coding chrX:152770110 chrX:152770114 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_115200 0 0 0 0 1 BGN chrX:152770079 3'AG 152770079 Downstream 36bp
chr15 75044494 75044494 1 + C T PAAD 75044493 + 75044473 75044513 41 ATTGGCAGGGAGCGGCGGCCCCGGCTCTCTGACAGACCCCA ATTGGCAGGGAGCGGCGGCCCTGGCTCTCTGACAGACCCCA < 41bp 0.500159799799099 0.73018471647153 0.29910874 0.16496426 prediction 0.460049833344863 Functional Gain - CYP1A2 ENSG00000140505 CDS Human protein_coding chr15:75044493 chr15:75044494 nonsynonymous SNV 0.061 1 22 hm5C_associated_SNPs_115201 0 0 0 0 2 CYP1A2 chr15:75044465 3'AG 75044465 Downstream 30bp
chr15 75044494 75044494 1 + C T PAAD 75044493 + 75044473 75044513 41 ATTGGCAGGGAGCGGCGGCCCCGGCTCTCTGACAGACCCCA ATTGGCAGGGAGCGGCGGCCCTGGCTCTCTGACAGACCCCA < 41bp 0.500159799799099 0.73018471647153 0.29910874 0.16496426 prediction 0.460049833344863 Functional Gain - CYP1A2 ENSG00000140505 CDS Human protein_coding chr15:75044493 chr15:75044494 nonsynonymous SNV 0.061 1 22 hm5C_associated_SNPs_115201 0 0 0 0 2 CYP1A2 chr15:75044588 5'GT 75044588 Upstream 95bp
chr8 145247303 145247303 1 + A G UCEC 145247300 + 145247280 145247320 41 CCTCTTGGCTGCACTGCACTCCCAGGTAGGAGGCGGGCGTC CCTCTTGGCTGCACTGCACTCCCGGGTAGGAGGCGGGCGTC < 41bp 0.48511656892039 0.730012374774054 0.3185114 0.63083315 prediction 0.460024749548108 Functional Gain - MROH1 ENSG00000179832 CDS Human protein_coding chr8:145247300 chr8:145247303 nonsynonymous SNV 0.859 3 24 hm5C_associated_SNPs_115203 0 0 1 0 2 MROH1 chr8:145247212 3'AG 145247212 Downstream 92bp
chr8 145247303 145247303 1 + A G UCEC 145247300 + 145247280 145247320 41 CCTCTTGGCTGCACTGCACTCCCAGGTAGGAGGCGGGCGTC CCTCTTGGCTGCACTGCACTCCCGGGTAGGAGGCGGGCGTC < 41bp 0.48511656892039 0.730012374774054 0.3185114 0.63083315 prediction 0.460024749548108 Functional Gain - MROH1 ENSG00000179832 CDS Human protein_coding chr8:145247300 chr8:145247303 nonsynonymous SNV 0.859 3 24 hm5C_associated_SNPs_115203 0 0 1 0 2 MROH1 chr8:145247304 5'GT 145247304 Upstream 2bp
chr19 15726480 15726480 1 + C G rs141696823 15726479 + 15726459 15726499 41 TCAGGCCGGTGGCAGCATCCCCGTGGCTGCTCCTGCTGGTG TCAGGCCGGTGGCAGCATCCCGGTGGCTGCTCCTGCTGGTG < 41bp 0.628813912411403 0.858815352887915 0.890285 0.89804083 prediction 0.460002880953025 Functional Gain - CYP4F8 ENSG00000186526 ncRNA_exonic Human protein_coding chr19:15726479 chr19:15726480 . 0.002 2 22 hm5C_associated_SNPs_115206 0 0 0 0 1 CYP4F8 chr19:15726427 3'AG 15726427 Downstream 54bp
chr16 31422071 31422071 1 + C G rs142278416 31422067 + 31422047 31422087 41 GGCCCCTCAGGTTACTCCACCGAGCTAGCCCTGTGGAAGGG GGCCCCTCAGGTTACTCCACCGAGGTAGCCCTGTGGAAGGG < 41bp 0.429313910678093 0.72999978973787 0.4555272 0.9241921 prediction 0.45999957947574 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422067 chr16:31422071 nonsynonymous SNV 0.054 0 25 hm5C_associated_SNPs_115207 0 0 0 0 1 ITGAD chr16:31422057 3'AG 31422057 Downstream 15bp
chr17 6930341 6930341 1 + C T SKCM 6930340 + 6930320 6930360 41 CCTTGCCCTACCTGCGGAACCCGCTTCCGCCACCTGCAGAC CCTTGCCCTACCTGCGGAACCTGCTTCCGCCACCTGCAGAC < 41bp 0.556144331470592 0.786137616052016 0.11349714 0.12114224 prediction 0.459986569162849 Functional Gain - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6930340 chr17:6930341 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_115212 0 0 0 0 2 BCL6B chr17:6930269 3'AG 6930269 Downstream 73bp
chr17 6930341 6930341 1 + C T SKCM 6930340 + 6930320 6930360 41 CCTTGCCCTACCTGCGGAACCCGCTTCCGCCACCTGCAGAC CCTTGCCCTACCTGCGGAACCTGCTTCCGCCACCTGCAGAC < 41bp 0.556144331470592 0.786137616052016 0.11349714 0.12114224 prediction 0.459986569162849 Functional Gain - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6930340 chr17:6930341 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_115212 0 0 0 0 2 BCL6B chr17:6930406 5'GT 6930406 Upstream 66bp
chr1 111854859 111854859 1 + C T rs61752461 111854858 + 111854838 111854878 41 TTCACCAACTGGGCCCAGTACCGGCCAGGCCTGGGGCGCTT TTCACCAACTGGGCCCAGTACTGGCCAGGCCTGGGGCGCTT < 41bp 0.502276969025413 0.73226199833261 0.41448638 0.54642737 prediction 0.459970058614395 Functional Gain - CHIA ENSG00000134216 CDS Human protein_coding chr1:111854858 chr1:111854859 nonsynonymous SNV 0.131 1 22 hm5C_associated_SNPs_115216 0 0 0 0 1 CHIA chr1:111854812 3'AG 111854812 Downstream 48bp
chrX 100364548 100364548 1 + C A UCEC 100364544 + 100364524 100364564 41 TCTGTGGTTAAGGCAGTCTCCTGGCTTTGTGTTGGCAAGTG TCTGTGGTTAAGGCAGTCTCCTGGATTTGTGTTGGCAAGTG < 41bp 0.704458496373069 0.934436494368221 0.26352918 0.51217246 prediction 0.459955995990305 Functional Gain - CENPI ENSG00000102384 CDS Human protein_coding chrX:100364544 chrX:100364548 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_115219 0 0 1 0 2 CENPI chrX:100364462 3'AG 100364462 Downstream 87bp
chrX 100364548 100364548 1 + C A UCEC 100364544 + 100364524 100364564 41 TCTGTGGTTAAGGCAGTCTCCTGGCTTTGTGTTGGCAAGTG TCTGTGGTTAAGGCAGTCTCCTGGATTTGTGTTGGCAAGTG < 41bp 0.704458496373069 0.934436494368221 0.26352918 0.51217246 prediction 0.459955995990305 Functional Gain - CENPI ENSG00000102384 CDS Human protein_coding chrX:100364544 chrX:100364548 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_115219 0 0 1 0 2 CENPI chrX:100364580 5'GT 100364580 Upstream 33bp
chr19 56477724 56477724 1 + C G rs183661608 56477723 + 56477703 56477743 41 TGCAGGGTGCTGAGATCCCCCCGGTGCCGTCTGCAGTGTCT TGCAGGGTGCTGAGATCCCCCGGGTGCCGTCTGCAGTGTCT < 41bp 0.410148860175213 0.729972735495195 0.26530626 0.83720356 prediction 0.459945470990391 Functional Gain - NLRP8 ENSG00000179709 CDS Human protein_coding chr19:56477723 chr19:56477724 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_115221 0 0 0 0 1 NLRP8 chr19:56477746 5'GT 56477746 Upstream 23bp
chr19 35501096 35501096 1 + C G LIHC 35501095 + 35501075 35501115 41 CAACATCTTCCGCTGGGAGACCACGGTGAGCCCGCAGCGGG CAACATCTTCCGCTGGGAGACGACGGTGAGCCCGCAGCGGG < 41bp 0.406234817515325 0.729971046627409 0.356162 0.3975929 prediction 0.459942093254818 Functional Gain - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35501095 chr19:35501096 synonymous SNV . 0 22 hm5C_associated_SNPs_115224 0 0 1 0 1 GRAMD1A chr19:35501099 5'GT 35501099 Upstream 4bp
chr16 68877538 68877538 1 + C A STAD 68877537 + 68877517 68877557 41 AGTCATGGCGGCCCGACAGGCCGTGGGCAGCGGGGCTCAGG AGTCATGGCGGCCCGACAGGCAGTGGGCAGCGGGGCTCAGG < 41bp 0.475147123123109 0.729966294808263 0.19752616 0.32066423 prediction 0.459932589616526 Functional Gain - TANGO6 ENSG00000103047 CDS Human protein_coding chr16:68877537 chr16:68877538 synonymous SNV . 0 22 hm5C_associated_SNPs_115225 0 0 1 0 1 TANGO6 chr16:68877614 5'GT 68877614 Upstream 77bp
chr4 6826344 6826344 1 + T C COAD 6826342 + 6826322 6826362 41 GAGAAATGTGGCATTGATGCCATGATTTACACTCGGTATGT GAGAAATGTGGCATTGATGCCACGATTTACACTCGGTATGT < 41bp 0.609846945316229 0.839804291112496 0.3549013 0.10197139 prediction 0.459914691592534 Functional Gain - KIAA0232 ENSG00000170871 CDS Human protein_coding chr4:6826342 chr4:6826344 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_115228 0 0 1 0 1 KIAA0232 chr4:6826411 5'GT 6826411 Upstream 68bp
chr9 75784009 75784009 1 + T C STAD 75784007 + 75783987 75784027 41 GTTTCCCGTTCTGAAATTGACATGAATGATATCAAAGCATT GTTTCCCGTTCTGAAATTGACACGAATGATATCAAAGCATT < 41bp 0.616266188185306 0.846213649953748 0.21159747 0.13733855 prediction 0.459894923536884 Functional Gain - ANXA1 ENSG00000135046 CDS Human protein_coding chr9:75784007 chr9:75784009 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_115231 0 0 1 0 1 ANXA1 chr9:75784070 5'GT 75784070 Upstream 62bp
chr15 75044539 75044539 1 + C A STAD 75044538 + 75044518 75044558 41 CCCTACTTGGAGGCCTTCATCCTGGAGACCTTCCGACACTC CCCTACTTGGAGGCCTTCATCATGGAGACCTTCCGACACTC < 41bp 0.597603237671948 0.827546890956061 0.8709328 0.93946695 prediction 0.459887306568227 Functional Gain - CYP1A2 ENSG00000140505 CDS Human protein_coding chr15:75044538 chr15:75044539 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_115232 0 0 0 0 2 CYP1A2 chr15:75044465 3'AG 75044465 Downstream 75bp
chr15 75044539 75044539 1 + C A STAD 75044538 + 75044518 75044558 41 CCCTACTTGGAGGCCTTCATCCTGGAGACCTTCCGACACTC CCCTACTTGGAGGCCTTCATCATGGAGACCTTCCGACACTC < 41bp 0.597603237671948 0.827546890956061 0.8709328 0.93946695 prediction 0.459887306568227 Functional Gain - CYP1A2 ENSG00000140505 CDS Human protein_coding chr15:75044538 chr15:75044539 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_115232 0 0 0 0 2 CYP1A2 chr15:75044588 5'GT 75044588 Upstream 50bp
chr12 123339903 123339903 1 + C T UCEC 123339902 + 123339882 123339922 41 AGGCCCCGGAAGATGAGGAGCCGGAGAATCTCATTGAGATC AGGCCCCGGAAGATGAGGAGCTGGAGAATCTCATTGAGATC < 41bp 0.480813197076127 0.729943206911561 0.8535681 0.6524812 prediction 0.459886413823121 Functional Gain - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123339902 chr12:123339903 nonsynonymous SNV 0.954 2 22 hm5C_associated_SNPs_115233 0 0 1 0 2 HIP1R chr12:123339812 3'AG 123339812 Downstream 92bp
chr12 123339903 123339903 1 + C T UCEC 123339902 + 123339882 123339922 41 AGGCCCCGGAAGATGAGGAGCCGGAGAATCTCATTGAGATC AGGCCCCGGAAGATGAGGAGCTGGAGAATCTCATTGAGATC < 41bp 0.480813197076127 0.729943206911561 0.8535681 0.6524812 prediction 0.459886413823121 Functional Gain - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123339902 chr12:123339903 nonsynonymous SNV 0.954 2 22 hm5C_associated_SNPs_115233 0 0 1 0 2 HIP1R chr12:123339952 5'GT 123339952 Upstream 50bp
chr2 190327291 190327291 1 + C T SKCM 190327290 + 190327270 190327310 41 AGAAGAATAAGGAGTTTCTCCCGCGTTTAGGAGCTACTATT AGAAGAATAAGGAGTTTCTCCTGCGTTTAGGAGCTACTATT < 41bp 0.541362859206291 0.771303044472189 0.20000198 0.15648699 prediction 0.459880370531796 Functional Gain - WDR75 ENSG00000115368 CDS Human protein_coding chr2:190327290 chr2:190327291 nonsynonymous SNV 0.868 4 22 hm5C_associated_SNPs_115234 0 0 1 0 2 WDR75 chr2:190327210 3'AG 190327210 Downstream 82bp
chr2 190327291 190327291 1 + C T SKCM 190327290 + 190327270 190327310 41 AGAAGAATAAGGAGTTTCTCCCGCGTTTAGGAGCTACTATT AGAAGAATAAGGAGTTTCTCCTGCGTTTAGGAGCTACTATT < 41bp 0.541362859206291 0.771303044472189 0.20000198 0.15648699 prediction 0.459880370531796 Functional Gain - WDR75 ENSG00000115368 CDS Human protein_coding chr2:190327290 chr2:190327291 nonsynonymous SNV 0.868 4 22 hm5C_associated_SNPs_115234 0 0 1 0 2 WDR75 chr2:190327368 5'GT 190327368 Upstream 78bp
chr2 226378142 226378142 1 + C T UCEC 226378141 + 226378121 226378161 41 AGTTACGTGGGCAAACATTTCCGCATGGGATTCATGACAAT AGTTACGTGGGCAAACATTTCTGCATGGGATTCATGACAAT < 41bp 0.558265866928825 0.788205199224866 0.3812129 0.68684375 prediction 0.459878664592083 Functional Gain - NYAP2 ENSG00000144460 CDS Human protein_coding chr2:226378141 chr2:226378142 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_115235 0 0 0 0 1 NYAP2 chr2:226378087 3'AG 226378087 Downstream 56bp
chr2 112686742 112686742 1 + C T rs150870104 112686741 + 112686721 112686761 41 CCAAGCCTTACCCGCTATTCCCGGGACCTTTTCCAGGGAGC CCAAGCCTTACCCGCTATTCCTGGGACCTTTTCCAGGGAGC < 41bp 0.4987330225005 0.729929411850267 0.9012378 0.75990206 prediction 0.459858823700534 Functional Gain - MERTK ENSG00000153208 CDS Human protein_coding chr2:112686741 chr2:112686742 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_115239 0 0 1 0 1 MERTK chr2:112686697 3'AG 112686697 Downstream 46bp
chr4 39472863 39472863 1 + T C KIRC 39472861 + 39472841 39472881 41 CTTTTCTTCCTACAGCACTTCGTGAGGCAGATGTAGACTGC CTTTTCTTCCTACAGCACTTCGCGAGGCAGATGTAGACTGC < 41bp 0.621108894839938 0.851034474027866 0.20758834 0.43643093 prediction 0.459851158375855 Functional Gain - LIAS ENSG00000121897 CDS Human protein_coding chr4:39472861 chr4:39472863 synonymous SNV . 0 23 hm5C_associated_SNPs_115241 0 0 1 0 2 LIAS chr4:39472856 3'AG 39472856 Downstream 8bp
chr4 39472863 39472863 1 + T C KIRC 39472861 + 39472841 39472881 41 CTTTTCTTCCTACAGCACTTCGTGAGGCAGATGTAGACTGC CTTTTCTTCCTACAGCACTTCGCGAGGCAGATGTAGACTGC < 41bp 0.621108894839938 0.851034474027866 0.20758834 0.43643093 prediction 0.459851158375855 Functional Gain - LIAS ENSG00000121897 CDS Human protein_coding chr4:39472861 chr4:39472863 synonymous SNV . 0 23 hm5C_associated_SNPs_115241 0 0 1 0 2 LIAS chr4:39472926 5'GT 39472926 Upstream 64bp
chrX 13618119 13618119 1 + C T UCEC 13618118 + 13618098 13618138 41 GAATGAGTGTGGAATGAAACCCCGGCCATGCCAACACAGAT GAATGAGTGTGGAATGAAACCTCGGCCATGCCAACACAGAT < 41bp 0.553818250844798 0.783741881836783 0.1126512 0.06127891 prediction 0.459847261983969 Functional Gain - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13618118 chrX:13618119 synonymous SNV . 0 22 hm5C_associated_SNPs_115243 0 0 0 0 2 EGFL6 chrX:13618094 3'AG 13618094 Downstream 26bp
chrX 13618119 13618119 1 + C T UCEC 13618118 + 13618098 13618138 41 GAATGAGTGTGGAATGAAACCCCGGCCATGCCAACACAGAT GAATGAGTGTGGAATGAAACCTCGGCCATGCCAACACAGAT < 41bp 0.553818250844798 0.783741881836783 0.1126512 0.06127891 prediction 0.459847261983969 Functional Gain - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13618118 chrX:13618119 synonymous SNV . 0 22 hm5C_associated_SNPs_115243 0 0 0 0 2 EGFL6 chrX:13618213 5'GT 13618213 Upstream 95bp
chr13 111368263 111368263 1 + A G PAAD 111368260 + 111368240 111368280 41 TCGGGGCCGGGGCTGCAGTTCGGACCGCCTCCCGCGACCCG TCGGGGCCGGGGCTGCAGTTCGGGCCGCCTCCCGCGACCCG < 41bp 0.535965643622417 0.765884816869488 0.8896644 0.9270921 prediction 0.459838346494143 Functional Gain - ING1 ENSG00000153487 CDS Human protein_coding chr13:111368260 chr13:111368263 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_115244 0 0 1 0 1 ING1 chr13:111368355 5'GT 111368355 Upstream 93bp
chrX 47106619 47106619 1 + C T UCEC 47106618 + 47106598 47106638 41 ACCCTCGTGGAGTTTCCTATCCGGTCAGGGGCCAGGGAGAG ACCCTCGTGGAGTTTCCTATCTGGTCAGGGGCCAGGGAGAG < 41bp 0.546848770239266 0.776765797465353 0.71528137 0.25753242 prediction 0.459834054452175 Functional Gain - USP11 ENSG00000102226 CDS Human protein_coding chrX:47106618 chrX:47106619 nonsynonymous SNV 0.982 3 22 hm5C_associated_SNPs_115245 0 0 1 0 1 USP11 chrX:47106620 5'GT 47106620 Upstream 2bp
chr9 139929107 139929107 1 + C A LUAD 139929103 + 139929083 139929123 41 TCTCTTCTCCTTGAAACAGACACCCGGCGGCAGTTCCTGCA TCTCTTCTCCTTGAAACAGACACCAGGCGGCAGTTCCTGCA < 41bp 0.3206127771872 0.729912663257738 0.10797116 0.21177956 prediction 0.459825326515476 Functional Gain - C9orf139 ENSG00000180539 CDS Human antisense chr9:139929103 chr9:139929107 synonymous SNV . 0 25 hm5C_associated_SNPs_115248 0 0 0 0 1 C9orf139 chr9:139929102 3'AG 139929102 Downstream 6bp
chr1 9657064 9657064 1 + C A LIHC 9657063 + 9657043 9657083 41 TGCAAGAGGTGCAACCACCACCAGACCACCAAGATCAAGCA TGCAAGAGGTGCAACCACCACAAGACCACCAAGATCAAGCA < 41bp 0.465206618545545 0.729904562204674 0.13591778 0.19784483 prediction 0.459809124409347 Functional Gain - TMEM201 ENSG00000188807 CDS Human protein_coding chr1:9657063 chr1:9657064 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_115250 0 0 1 0 1 TMEM201 chr1:9657111 5'GT 9657111 Upstream 48bp
chr1 45268739 45268739 1 + C T COAD 45268738 + 45268718 45268758 41 GCCAGCCTCTCACTGCCTGCCCGGCAGCTCCTGGCCGCCAT GCCAGCCTCTCACTGCCTGCCTGGCAGCTCCTGGCCGCCAT < 41bp 0.479621055126055 0.729896271325962 0.2166703 0.2089799 prediction 0.459792542651924 Functional Gain - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45268738 chr1:45268739 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_115253 0 0 0 0 1 PLK3 chr1:45268825 5'GT 45268825 Upstream 87bp
chr20 61594944 61594944 1 + T C SKCM 61594942 + 61594922 61594962 41 ATTGGGCCCCGCAGGGCAGCCGTCGTCTCCCAGCTCTCTGC ATTGGGCCCCGCAGGGCAGCCGCCGTCTCCCAGCTCTCTGC < 41bp 0.580823737977082 0.810716861184504 0.09750554 0.16797441 prediction 0.459786246414843 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61594942 chr20:61594944 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_115256 0 0 0 0 2 SLC17A9 chr20:61594936 3'AG 61594936 Downstream 9bp
chr20 61594944 61594944 1 + T C SKCM 61594942 + 61594922 61594962 41 ATTGGGCCCCGCAGGGCAGCCGTCGTCTCCCAGCTCTCTGC ATTGGGCCCCGCAGGGCAGCCGCCGTCTCCCAGCTCTCTGC < 41bp 0.580823737977082 0.810716861184504 0.09750554 0.16797441 prediction 0.459786246414843 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61594942 chr20:61594944 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_115256 0 0 0 0 2 SLC17A9 chr20:61595032 5'GT 61595032 Upstream 89bp
chr2 97464925 97464925 1 + C T SKCM 97464924 + 97464904 97464944 41 GCCCGCCATTACCTGTACACCCGAAATAAGCCGGCCGACTA GCCCGCCATTACCTGTACACCTGAAATAAGCCGGCCGACTA < 41bp 0.567211819023429 0.797103165095531 0.3260417 0.27285463 prediction 0.459782692144203 Functional Gain - CNNM4 ENSG00000158158 CDS Human protein_coding chr2:97464924 chr2:97464925 stopgain 0.997 1 22 hm5C_associated_SNPs_115259 0 0 0 0 1 CNNM4 chr2:97464963 5'GT 97464963 Upstream 39bp
chr19 55178198 55178198 1 + C G rs73933939 55178194 + 55178174 55178214 41 GAGGACGGGGTGGAAATGGACACTCGGGTGAGAACCCGCCC GAGGACGGGGTGGAAATGGACACTGGGGTGAGAACCCGCCC < 41bp 0.437189985421203 0.729890887298614 0.10360536 0.22908315 prediction 0.459781774597228 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55178194 chr19:55178198 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_115260 0 0 0 0 3 LILRB4 chr19:55178145 3'AG 55178145 Downstream 54bp
chr19 55178198 55178198 1 + C G rs73933939 55178194 + 55178174 55178214 41 GAGGACGGGGTGGAAATGGACACTCGGGTGAGAACCCGCCC GAGGACGGGGTGGAAATGGACACTGGGGTGAGAACCCGCCC < 41bp 0.437189985421203 0.729890887298614 0.10360536 0.22908315 prediction 0.459781774597228 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55178194 chr19:55178198 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_115260 0 0 0 0 3 LILRB4 chr19:55178148 3'AG 55178148 Downstream 51bp
chr19 55178198 55178198 1 + C G rs73933939 55178194 + 55178174 55178214 41 GAGGACGGGGTGGAAATGGACACTCGGGTGAGAACCCGCCC GAGGACGGGGTGGAAATGGACACTGGGGTGAGAACCCGCCC < 41bp 0.437189985421203 0.729890887298614 0.10360536 0.22908315 prediction 0.459781774597228 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55178194 chr19:55178198 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_115260 0 0 0 0 3 LILRB4 chr19:55178200 5'GT 55178200 Upstream 3bp
chr15 25479266 25479266 1 + C A LUSC 25479265 + 25479245 25479285 41 CCCAGGCCAGTGTACGTCAGCCAGGTGCTCAGCCCATGGTG CCCAGGCCAGTGTACGTCAGCAAGGTGCTCAGCCCATGGTG < 41bp 0.488432297723245 0.729890175199394 0.92465234 0.9091049 prediction 0.459780350398788 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25479265 chr15:25479266 . . 0 22 hm5C_associated_SNPs_115261 0 0 0 0 2 SNHG14 chr15:25479205 3'AG 25479205 Downstream 62bp
chr15 25479266 25479266 1 + C A LUSC 25479265 + 25479245 25479285 41 CCCAGGCCAGTGTACGTCAGCCAGGTGCTCAGCCCATGGTG CCCAGGCCAGTGTACGTCAGCAAGGTGCTCAGCCCATGGTG < 41bp 0.488432297723245 0.729890175199394 0.92465234 0.9091049 prediction 0.459780350398788 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25479265 chr15:25479266 . . 0 22 hm5C_associated_SNPs_115261 0 0 0 0 2 SNHG14 chr15:25479350 5'GT 25479350 Upstream 85bp
chr5 140033627 140033627 1 + T G COAD 140033624 + 140033604 140033644 41 GGTGAAAGGCTTGGATTTTGCTCTGCTTCAAAAGGTGAGTC GGTGAAAGGCTTGGATTTTGCTCGGCTTCAAAAGGTGAGTC < 41bp 0.694986469366273 0.924872995314693 0.07291594 0.11412457 prediction 0.459773051896839 Functional Gain - IK ENSG00000113141 CDS Human protein_coding chr5:140033624 chr5:140033627 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_115262 0 0 1 0 1 IK chr5:140033637 5'GT 140033637 Upstream 11bp
chr10 45938873 45938873 1 + C A UCEC 45938872 + 45938852 45938892 41 CCCCTGAGCCAGGTTCACGGCCGAGGTGGTAGACATCTACT CCCCTGAGCCAGGTTCACGGCAGAGGTGGTAGACATCTACT < 41bp 0.46535258906005 0.729886389058958 0.6384177 0.80806893 prediction 0.459772778117915 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45938872 chr10:45938873 synonymous SNV . 0 22 hm5C_associated_SNPs_115264 0 0 1 0 1 ALOX5 chr10:45938864 3'AG 45938864 Downstream 10bp
chr17 75199695 75199695 1 + C G HNSC 75199694 + 75199674 75199714 41 CAGGCTGGGGCAGATGGACACCAAAGGCTTGGTGAGAGCGC CAGGCTGGGGCAGATGGACACGAAAGGCTTGGTGAGAGCGC < 41bp 0.409632721449741 0.729886222633218 0.14938238 0.6874377 prediction 0.459772445266437 Functional Gain - SEC14L1 ENSG00000129657 CDS Human protein_coding chr17:75199694 chr17:75199695 synonymous SNV . 0 22 hm5C_associated_SNPs_115265 0 0 1 0 2 SEC14L1 chr17:75199652 3'AG 75199652 Downstream 44bp
chr17 75199695 75199695 1 + C G HNSC 75199694 + 75199674 75199714 41 CAGGCTGGGGCAGATGGACACCAAAGGCTTGGTGAGAGCGC CAGGCTGGGGCAGATGGACACGAAAGGCTTGGTGAGAGCGC < 41bp 0.409632721449741 0.729886222633218 0.14938238 0.6874377 prediction 0.459772445266437 Functional Gain - SEC14L1 ENSG00000129657 CDS Human protein_coding chr17:75199694 chr17:75199695 synonymous SNV . 0 22 hm5C_associated_SNPs_115265 0 0 1 0 2 SEC14L1 chr17:75199740 5'GT 75199740 Upstream 46bp
chr3 38039054 38039054 1 + C T UCEC 38039053 + 38039033 38039073 41 TGGTGTGGTGGATGATGAGGCCAAAGCCCCGGACCTCATGC TGGTGTGGTGGATGATGAGGCTAAAGCCCCGGACCTCATGC < 41bp 0.483058258558391 0.729883285541135 0.11671919 0.21622556 prediction 0.45976657108227 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38039053 chr3:38039054 synonymous SNV . 0 22 hm5C_associated_SNPs_115267 0 0 0 0 1 VILL chr3:38038974 3'AG 38038974 Downstream 81bp
chr2 143913190 143913190 1 + T C STAD 143913188 + 143913168 143913208 41 AGGCTCAGCCAAAGTAAATCCATGATCCTCACCGATGTCGG AGGCTCAGCCAAAGTAAATCCACGATCCTCACCGATGTCGG < 41bp 0.594110882041043 0.823993331529744 0.08989227 0.09133157 prediction 0.459764898977401 Functional Gain - ARHGAP15 ENSG00000075884 CDS Human protein_coding chr2:143913188 chr2:143913190 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_115268 0 0 0 0 1 ARHGAP15 chr2:143913224 5'GT 143913224 Upstream 35bp
chr12 26221695 26221695 1 + C T UCEC 26221694 + 26221674 26221714 41 CGGCAGCTCCCCAGTAATCTCCGCATTCTGCAGAATCCTAT CGGCAGCTCCCCAGTAATCTCTGCATTCTGCAGAATCCTAT < 41bp 0.555839004711017 0.785721388683184 0.3131587 0.26953626 prediction 0.459764767944334 Functional Gain - RASSF8 ENSG00000123094 CDS Human protein_coding chr12:26221694 chr12:26221695 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_115269 0 0 0 0 1 RASSF8 chr12:26221630 3'AG 26221630 Downstream 66bp
chr4 110448535 110448535 1 + A G LIHC 110448532 + 110448512 110448552 41 GCCAGTGGTAAGTTCACTAGCAGATGTATATGCGGGAGTGG GCCAGTGGTAAGTTCACTAGCAGGTGTATATGCGGGAGTGG < 41bp 0.486176796360918 0.729869646863479 0.7899789 0.89563847 prediction 0.459739293726958 Functional Gain - SEC24B ENSG00000138802 CDS Human protein_coding chr4:110448532 chr4:110448535 nonsynonymous SNV 0.280 2 24 hm5C_associated_SNPs_115270 0 0 0 0 2 SEC24B chr4:110448478 3'AG 110448478 Downstream 58bp
chr4 110448535 110448535 1 + A G LIHC 110448532 + 110448512 110448552 41 GCCAGTGGTAAGTTCACTAGCAGATGTATATGCGGGAGTGG GCCAGTGGTAAGTTCACTAGCAGGTGTATATGCGGGAGTGG < 41bp 0.486176796360918 0.729869646863479 0.7899789 0.89563847 prediction 0.459739293726958 Functional Gain - SEC24B ENSG00000138802 CDS Human protein_coding chr4:110448532 chr4:110448535 nonsynonymous SNV 0.280 2 24 hm5C_associated_SNPs_115270 0 0 0 0 2 SEC24B chr4:110448588 5'GT 110448588 Upstream 54bp
chr17 78409975 78409975 1 + A G BLCA 78409972 + 78409952 78409992 41 GTGAGAGCACACGTCCTCGTCTCATTCCTGATCGAACGCGG GTGAGAGCACACGTCCTCGTCTCGTTCCTGATCGAACGCGG < 41bp 0.52296129818984 0.752824136880217 0.12421796 0.11454889 prediction 0.459725677380754 Functional Gain - ENDOV ENSG00000173818 CDS Human protein_coding chr17:78409972 chr17:78409975 nonsynonymous SNV 0.036 0 24 hm5C_associated_SNPs_115271 0 0 1 1 1 ENDOV chr17:78409933 3'AG 78409933 Downstream 43bp
chr7 23309592 23309592 1 + C T rs563808672 23309591 + 23309571 23309611 41 CCTCCCCTGTCGCAGCATTCCCACGGAGGTCTGTACCATCA CCTCCCCTGTCGCAGCATTCCTACGGAGGTCTGTACCATCA < 41bp 0.571491967127299 0.801335920775221 0.12789154 0.056703776 prediction 0.459687907295846 Functional Gain - GPNMB ENSG00000136235 CDS Human protein_coding chr7:23309591 chr7:23309592 synonymous SNV . 0 22 hm5C_associated_SNPs_115275 0 0 0 0 1 GPNMB chr7:23309586 3'AG 23309586 Downstream 7bp
chrX 129499521 129499521 1 + C A UCEC 129499517 + 129499497 129499537 41 TTAAACTTTTCCTCTTAGTTCCAGCTTTACATGTGGTTTGG TTAAACTTTTCCTCTTAGTTCCAGATTTACATGTGGTTTGG < 41bp 0.374767378034943 0.72983943005566 0.39362115 0.5996765 prediction 0.459678860111321 Functional Gain - SLC25A14 ENSG00000102078 CDS Human protein_coding chrX:129499517 chrX:129499521 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_115277 0 0 1 6 1 SLC25A14 chrX:129499515 3'AG 129499515 Downstream 7bp
chr13 40229983 40229983 1 + T C COAD 40229981 + 40229961 40230001 41 ACCCGCTGTCGCGCAAGCTGCATAAGATCCTGGAGACGCGG ACCCGCTGTCGCGCAAGCTGCACAAGATCCTGGAGACGCGG < 41bp 0.565948445973861 0.795776267700683 0.14630821 0.13457203 prediction 0.459655643453645 Functional Gain - COG6 ENSG00000133103 CDS Human protein_coding chr13:40229981 chr13:40229983 synonymous SNV . 0 23 hm5C_associated_SNPs_115280 0 0 1 0 1 COG6 chr13:40230016 5'GT 40230016 Upstream 34bp
chr1 160104970 160104970 1 + T C COAD 160104968 + 160104948 160104988 41 TGCGTGGTGCACGGCTCTGACCTGAAGGACATGACATCGGA TGCGTGGTGCACGGCTCTGACCCGAAGGACATGACATCGGA < 41bp 0.432982596871838 0.729813872860835 0.11918956 0.113613695 prediction 0.459627745721669 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160104968 chr1:160104970 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_115281 0 0 0 0 1 ATP1A2 chr1:160104935 3'AG 160104935 Downstream 36bp
chr19 804119 804119 1 + C T COAD 804118 + 804098 804138 41 GTGATCCACATCCGGAAGCTCCCCATCGACGTCACGGAGGG GTGATCCACATCCGGAAGCTCTCCATCGACGTCACGGAGGG < 41bp 0.602887260853856 0.83269842570203 0.026122719 0.9628184 prediction 0.459622329696348 Functional Gain - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804118 chr19:804119 nonsynonymous SNV 0.150 4 22 hm5C_associated_SNPs_115282 0 0 1 0 2 PTBP1 chr19:804036 3'AG 804036 Downstream 84bp
chr19 804119 804119 1 + C T COAD 804118 + 804098 804138 41 GTGATCCACATCCGGAAGCTCCCCATCGACGTCACGGAGGG GTGATCCACATCCGGAAGCTCTCCATCGACGTCACGGAGGG < 41bp 0.602887260853856 0.83269842570203 0.026122719 0.9628184 prediction 0.459622329696348 Functional Gain - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804118 chr19:804119 nonsynonymous SNV 0.150 4 22 hm5C_associated_SNPs_115282 0 0 1 0 2 PTBP1 chr19:804208 5'GT 804208 Upstream 90bp
chr11 119020882 119020882 1 + C T SKCM 119020881 + 119020861 119020901 41 GTTCGTGGAGCTGTCCTATTCCGTGCGGGAGGGGCCCTGCT GTTCGTGGAGCTGTCCTATTCTGTGCGGGAGGGGCCCTGCT < 41bp 0.488698301625901 0.729804907593556 0.18193167 0.18938205 prediction 0.459609815187113 Functional Gain - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119020881 chr11:119020882 synonymous SNV . 0 22 hm5C_associated_SNPs_115288 0 0 1 0 1 ABCG4 chr11:119020913 5'GT 119020913 Upstream 32bp
chr5 141318258 141318258 1 + C T LUAD 141318257 + 141318237 141318277 41 CGGAGCCAGCCTGGAAGCCTCCAGCAGGGCTATTCCCCCAC CGGAGCCAGCCTGGAAGCCTCTAGCAGGGCTATTCCCCCAC < 41bp 0.523530514535471 0.753328997531371 0.24403346 0.07430577 prediction 0.459596965991801 Functional Gain - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141318257 chr5:141318258 synonymous SNV . 0 22 hm5C_associated_SNPs_115290 0 0 1 0 1 KIAA0141 chr5:141318325 5'GT 141318325 Upstream 68bp
chr22 30163526 30163526 1 + A G rs76013375 30163523 + 30163503 30163543 41 GCGCGGACGCTATCTACGACCACATCAACGAGGGGGTGAGG GCGCGGACGCTATCTACGACCACGTCAACGAGGGGGTGAGG < 41bp 0.496257452518873 0.729797688161843 0.06681141 0.13224903 prediction 0.459595376323685 Functional Gain - UQCR10 ENSG00000184076 CDS Human protein_coding chr22:30163523 chr22:30163526 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_115291 0 0 1 0 2 UQCR10 chr22:30163537 5'GT 30163537 Upstream 12bp
chr22 30163526 30163526 1 + A G rs76013375 30163523 + 30163503 30163543 41 GCGCGGACGCTATCTACGACCACATCAACGAGGGGGTGAGG GCGCGGACGCTATCTACGACCACGTCAACGAGGGGGTGAGG < 41bp 0.496257452518873 0.729797688161843 0.06681141 0.13224903 prediction 0.459595376323685 Functional Gain - UQCR10 ENSG00000184076 CDS Human protein_coding chr22:30163523 chr22:30163526 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_115291 0 0 1 0 2 UQCR10 chr22:30163596 5'GT 30163596 Upstream 71bp
chr11 34664214 34664214 1 + C G BRCA 34664210 + 34664190 34664230 41 GGAGGTGGTGTAATGAATCTCAACCCCGGCAACAACCTCCT GGAGGTGGTGTAATGAATCTCAACGCCGGCAACAACCTCCT < 41bp 0.430986468614875 0.729795394809414 0.06637555 0.18706712 prediction 0.459590789618828 Functional Gain - EHF ENSG00000135373 CDS Human protein_coding chr11:34664210 chr11:34664214 nonsynonymous SNV 0.939 0 25 hm5C_associated_SNPs_115292 0 0 0 0 2 EHF chr11:34664175 3'AG 34664175 Downstream 40bp
chr11 34664214 34664214 1 + C G BRCA 34664210 + 34664190 34664230 41 GGAGGTGGTGTAATGAATCTCAACCCCGGCAACAACCTCCT GGAGGTGGTGTAATGAATCTCAACGCCGGCAACAACCTCCT < 41bp 0.430986468614875 0.729795394809414 0.06637555 0.18706712 prediction 0.459590789618828 Functional Gain - EHF ENSG00000135373 CDS Human protein_coding chr11:34664210 chr11:34664214 nonsynonymous SNV 0.939 0 25 hm5C_associated_SNPs_115292 0 0 0 0 2 EHF chr11:34664274 5'GT 34664274 Upstream 61bp
chr16 71957234 71957234 1 + C T SKCM 71957233 + 71957213 71957253 41 TGGGGACTTATCAGGCCTTTCCCAATATTCATCCACCTCAG TGGGGACTTATCAGGCCTTTCTCAATATTCATCCACCTCAG < 41bp 0.592226116200372 0.822018116897227 0.30568755 0.89529455 prediction 0.45958400139371 Functional Gain - IST1 ENSG00000182149 CDS Human protein_coding chr16:71957233 chr16:71957234 nonsynonymous SNV 0.996 0 22 hm5C_associated_SNPs_115294 0 0 1 0 2 IST1 chr16:71957191 3'AG 71957191 Downstream 44bp
chr16 71957234 71957234 1 + C T SKCM 71957233 + 71957213 71957253 41 TGGGGACTTATCAGGCCTTTCCCAATATTCATCCACCTCAG TGGGGACTTATCAGGCCTTTCTCAATATTCATCCACCTCAG < 41bp 0.592226116200372 0.822018116897227 0.30568755 0.89529455 prediction 0.45958400139371 Functional Gain - IST1 ENSG00000182149 CDS Human protein_coding chr16:71957233 chr16:71957234 nonsynonymous SNV 0.996 0 22 hm5C_associated_SNPs_115294 0 0 1 0 2 IST1 chr16:71957283 5'GT 71957283 Upstream 50bp
chr11 2415336 2415336 1 + C G LUSC 2415335 + 2415315 2415355 41 TCCCCGCAAGGCATCTACATCCTCATCGCTGTGGGCGCTGT TCCCCGCAAGGCATCTACATCGTCATCGCTGTGGGCGCTGT < 41bp 0.409567900101136 0.729786327724004 0.0693582 0.1981282 prediction 0.459572655448008 Functional Gain - CD81 ENSG00000110651 CDS Human protein_coding chr11:2415335 chr11:2415336 nonsynonymous SNV 0.974 4 22 hm5C_associated_SNPs_115296 0 0 1 0 2 CD81 chr11:2415325 3'AG 2415325 Downstream 12bp
chr11 2415336 2415336 1 + C G LUSC 2415335 + 2415315 2415355 41 TCCCCGCAAGGCATCTACATCCTCATCGCTGTGGGCGCTGT TCCCCGCAAGGCATCTACATCGTCATCGCTGTGGGCGCTGT < 41bp 0.409567900101136 0.729786327724004 0.0693582 0.1981282 prediction 0.459572655448008 Functional Gain - CD81 ENSG00000110651 CDS Human protein_coding chr11:2415335 chr11:2415336 nonsynonymous SNV 0.974 4 22 hm5C_associated_SNPs_115296 0 0 1 0 2 CD81 chr11:2415422 5'GT 2415422 Upstream 87bp
chr11 6291535 6291535 1 + T C rs1805003 6291533 + 6291513 6291553 41 CTCGTGTGCTGCAGTGCGTGCATCGCTGGCCCAGTGCGCGG CTCGTGTGCTGCAGTGCGTGCACCGCTGGCCCAGTGCGCGG < 41bp 0.463792542438779 0.729786027569619 0.16058353 0.09746811 prediction 0.459572055139237 Functional Gain - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6291533 chr11:6291535 synonymous SNV . 0 23 hm5C_associated_SNPs_115297 0 0 0 0 1 CCKBR chr11:6291567 5'GT 6291567 Upstream 33bp
chr16 57153179 57153179 1 + C T SKCM 57153178 + 57153158 57153198 41 GATGGCAAGTGGATGCTGGTCCACAGGACTGAGGTGGGTAC GATGGCAAGTGGATGCTGGTCTACAGGACTGAGGTGGGTAC < 41bp 0.582031387155145 0.81181739028774 0.45064843 0.8593807 prediction 0.45957200626519 Functional Gain - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57153178 chr16:57153179 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_115298 0 0 1 0 2 CPNE2 chr16:57153107 3'AG 57153107 Downstream 73bp
chr16 57153179 57153179 1 + C T SKCM 57153178 + 57153158 57153198 41 GATGGCAAGTGGATGCTGGTCCACAGGACTGAGGTGGGTAC GATGGCAAGTGGATGCTGGTCTACAGGACTGAGGTGGGTAC < 41bp 0.582031387155145 0.81181739028774 0.45064843 0.8593807 prediction 0.45957200626519 Functional Gain - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57153178 chr16:57153179 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_115298 0 0 1 0 2 CPNE2 chr16:57153190 5'GT 57153190 Upstream 12bp
chr20 19955331 19955331 1 + C A rs371812021 19955327 + 19955307 19955347 41 GCTCCCCAGCTGACAGCAAACCCCCGAACCTTCCACCTCCC GCTCCCCAGCTGACAGCAAACCCCAGAACCTTCCACCTCCC < 41bp 0.297206833943573 0.729784946607188 0.21020484 0.095519364 prediction 0.459569893214377 Functional Gain - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19955327 chr20:19955331 nonsynonymous SNV 0.937 1 25 hm5C_associated_SNPs_115299 0 0 1 0 1 RIN2 chr20:19955298 3'AG 19955298 Downstream 34bp
chr1 150297544 150297544 1 + C T COAD 150297543 + 150297523 150297563 41 CATGGACAAGAAGAAGGCAGCCGGTATGTACCTTTCTGCAT CATGGACAAGAAGAAGGCAGCTGGTATGTACCTTTCTGCAT < 41bp 0.502770088080303 0.732554591146522 0.14844552 0.1798034 prediction 0.459569006132438 Functional Gain - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150297543 chr1:150297544 synonymous SNV . 0 22 hm5C_associated_SNPs_115300 0 0 1 0 1 PRPF3 chr1:150297545 5'GT 150297545 Upstream 2bp
chr17 29283406 29283406 1 + C A LGG 29283405 + 29283385 29283425 41 CGGAGATTTGTCCTCACTTGCCCCAGTGAGAAGGAACAGCA CGGAGATTTGTCCTCACTTGCACCAGTGAGAAGGAACAGCA < 41bp 0.578607852882365 0.808384606634553 0.19615942 0.3856284 prediction 0.459553507504376 Functional Gain - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29283405 chr17:29283406 nonsynonymous SNV 0.905 4 22 hm5C_associated_SNPs_115303 0 0 0 0 1 ADAP2 chr17:29283487 5'GT 29283487 Upstream 82bp
chrX 73745656 73745656 1 + C A UCEC 73745652 + 73745632 73745672 41 GCTCTTGGTGTGTATTGGGGCTACCTCAGGCCTTGGGCGTC GCTCTTGGTGTGTATTGGGGCTACATCAGGCCTTGGGCGTC < 41bp 0.296886098300602 0.729775451991124 0.56395555 0.9179453 prediction 0.459550903982249 Functional Gain - SLC16A2 ENSG00000147100 CDS Human protein_coding chrX:73745652 chrX:73745656 synonymous SNV . 0 25 hm5C_associated_SNPs_115304 0 0 0 0 2 SLC16A2 chrX:73745585 3'AG 73745585 Downstream 72bp
chrX 73745656 73745656 1 + C A UCEC 73745652 + 73745632 73745672 41 GCTCTTGGTGTGTATTGGGGCTACCTCAGGCCTTGGGCGTC GCTCTTGGTGTGTATTGGGGCTACATCAGGCCTTGGGCGTC < 41bp 0.296886098300602 0.729775451991124 0.56395555 0.9179453 prediction 0.459550903982249 Functional Gain - SLC16A2 ENSG00000147100 CDS Human protein_coding chrX:73745652 chrX:73745656 synonymous SNV . 0 25 hm5C_associated_SNPs_115304 0 0 0 0 2 SLC16A2 chrX:73745728 5'GT 73745728 Upstream 73bp
chr2 24283794 24283794 1 + C A HNSC 24283793 + 24283773 24283813 41 GGTTTTGAAGAGGGTGCAGCCCAGGTAGGATGAGGATTCGC GGTTTTGAAGAGGGTGCAGCCAAGGTAGGATGAGGATTCGC < 41bp 0.582796393344514 0.812558515033944 0.09586701 0.16151467 prediction 0.459524243378861 Functional Gain - FKBP1B ENSG00000119782 CDS Human protein_coding chr2:24283793 chr2:24283794 nonsynonymous SNV 0.976 1 22 hm5C_associated_SNPs_115307 0 0 0 0 1 FKBP1B chr2:24283796 5'GT 24283796 Upstream 3bp
chr17 19318855 19318855 1 + A G THCA 19318852 + 19318832 19318872 41 TGGCTGCTCAGCTGCACGACCTGAGGAAGGTGGAAGCTGCC TGGCTGCTCAGCTGCACGACCTGGGGAAGGTGGAAGCTGCC < 41bp 0.483683269105306 0.72975733652973 0.42908075 0.8845692 prediction 0.45951467305946 Functional Gain - RNF112 ENSG00000128482 CDS Human protein_coding chr17:19318852 chr17:19318855 nonsynonymous SNV 0.986 3 24 hm5C_associated_SNPs_115308 0 0 0 0 2 RNF112 chr17:19318831 3'AG 19318831 Downstream 25bp
chr17 19318855 19318855 1 + A G THCA 19318852 + 19318832 19318872 41 TGGCTGCTCAGCTGCACGACCTGAGGAAGGTGGAAGCTGCC TGGCTGCTCAGCTGCACGACCTGGGGAAGGTGGAAGCTGCC < 41bp 0.483683269105306 0.72975733652973 0.42908075 0.8845692 prediction 0.45951467305946 Functional Gain - RNF112 ENSG00000128482 CDS Human protein_coding chr17:19318852 chr17:19318855 nonsynonymous SNV 0.986 3 24 hm5C_associated_SNPs_115308 0 0 0 0 2 RNF112 chr17:19318905 5'GT 19318905 Upstream 51bp
chr16 25123281 25123281 1 + T C STAD 25123279 + 25123259 25123299 41 TGCGACGCAGACGACGAGGGCGTGCGCGGCACCTGCGAAGA TGCGACGCAGACGACGAGGGCGCGCGCGGCACCTGCGAAGA < 41bp 0.533526177300744 0.763278033056278 0.38218743 0.45882675 prediction 0.459503711511069 Functional Gain - LCMT1 ENSG00000205629 CDS Human protein_coding chr16:25123279 chr16:25123281 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_115310 0 0 1 0 1 LCMT1 chr16:25123317 5'GT 25123317 Upstream 37bp
chr16 57394397 57394397 1 + T C STAD 57394395 + 57394375 57394415 41 AGCGTCTGCTGCCGTGATTACGTCCGTTACCGTCTGCCCCT AGCGTCTGCTGCCGTGATTACGCCCGTTACCGTCTGCCCCT < 41bp 0.449925850110709 0.729750470003027 0.3682946 0.29103047 prediction 0.459500940006055 Functional Gain - CCL22 ENSG00000102962 CDS Human protein_coding chr16:57394395 chr16:57394397 nonsynonymous SNV 0.023 0 23 hm5C_associated_SNPs_115312 0 0 0 0 2 CCL22 chr16:57394349 3'AG 57394349 Downstream 49bp
chr16 57394397 57394397 1 + T C STAD 57394395 + 57394375 57394415 41 AGCGTCTGCTGCCGTGATTACGTCCGTTACCGTCTGCCCCT AGCGTCTGCTGCCGTGATTACGCCCGTTACCGTCTGCCCCT < 41bp 0.449925850110709 0.729750470003027 0.3682946 0.29103047 prediction 0.459500940006055 Functional Gain - CCL22 ENSG00000102962 CDS Human protein_coding chr16:57394395 chr16:57394397 nonsynonymous SNV 0.023 0 23 hm5C_associated_SNPs_115312 0 0 0 0 2 CCL22 chr16:57394472 5'GT 57394472 Upstream 76bp
chr17 42232730 42232730 1 + C T COAD 42232729 + 42232709 42232749 41 ACCTGGTCCATATTTACAGCCCGGATTCTGGGGATGGGAGC ACCTGGTCCATATTTACAGCCTGGATTCTGGGGATGGGAGC < 41bp 0.572815307319021 0.802561135573011 0.15090874 0.100551546 prediction 0.45949165650798 Functional Gain - C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42232729 chr17:42232730 nonsynonymous SNV 0.935 0 22 hm5C_associated_SNPs_115314 0 0 0 0 2 C17orf53 chr17:42232654 3'AG 42232654 Downstream 77bp
chr17 42232730 42232730 1 + C T COAD 42232729 + 42232709 42232749 41 ACCTGGTCCATATTTACAGCCCGGATTCTGGGGATGGGAGC ACCTGGTCCATATTTACAGCCTGGATTCTGGGGATGGGAGC < 41bp 0.572815307319021 0.802561135573011 0.15090874 0.100551546 prediction 0.45949165650798 Functional Gain - C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42232729 chr17:42232730 nonsynonymous SNV 0.935 0 22 hm5C_associated_SNPs_115314 0 0 0 0 2 C17orf53 chr17:42232779 5'GT 42232779 Upstream 50bp
chr14 24530834 24530834 1 + A G UCEC 24530831 + 24530811 24530851 41 ACTGTGCCCCGGAACTTCATCCGAGGGGCACTGCTGGAGCA ACTGTGCCCCGGAACTTCATCCGGGGGGCACTGCTGGAGCA < 41bp 0.487628454666384 0.729744393122608 0.89228374 0.92500865 prediction 0.459488786245215 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24530831 chr14:24530834 synonymous SNV . 0 24 hm5C_associated_SNPs_115315 0 0 0 0 1 CARMIL3 chr14:24530881 5'GT 24530881 Upstream 48bp
chr22 24121539 24121539 1 + C T UCEC 24121538 + 24121518 24121558 41 CCATCTGATGGGCTGAGTGCCCGCAACCGACAGAAGAGGTT CCATCTGATGGGCTGAGTGCCTGCAACCGACAGAAGAGGTT < 41bp 0.474305624609125 0.729742403740483 0.11267659 0.15760627 prediction 0.459484807480966 Functional Gain - MMP11 ENSG00000099953 CDS Human protein_coding chr22:24121538 chr22:24121539 nonsynonymous SNV 0.929 3 22 hm5C_associated_SNPs_115316 0 0 0 0 2 MMP11 chr22:24121555 5'GT 24121555 Upstream 17bp
chr22 24121539 24121539 1 + C T UCEC 24121538 + 24121518 24121558 41 CCATCTGATGGGCTGAGTGCCCGCAACCGACAGAAGAGGTT CCATCTGATGGGCTGAGTGCCTGCAACCGACAGAAGAGGTT < 41bp 0.474305624609125 0.729742403740483 0.11267659 0.15760627 prediction 0.459484807480966 Functional Gain - MMP11 ENSG00000099953 CDS Human protein_coding chr22:24121538 chr22:24121539 nonsynonymous SNV 0.929 3 22 hm5C_associated_SNPs_115316 0 0 0 0 2 MMP11 chr22:24121603 5'GT 24121603 Upstream 65bp
chr8 92261935 92261935 1 + C T SARC 92261934 + 92261914 92261954 41 TTTGGAGCAAGATGCATACCCCCCAGTGTGAAGACATTATA TTTGGAGCAAGATGCATACCCTCCAGTGTGAAGACATTATA < 41bp 0.584503655119979 0.814241123187161 0.06625849 0.9166237 prediction 0.459474936134364 Functional Gain - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92261934 chr8:92261935 nonsynonymous SNV 0.175 1 22 hm5C_associated_SNPs_115319 0 0 0 0 1 SLC26A7 chr8:92261847 3'AG 92261847 Downstream 89bp
chr1 4476445 4476445 1 + T G rs114068602 4476443 + 4476423 4476463 41 AAGTCTGCCTGGGCCTCCTGCATGAGGTCATGAGTCTTAAT AAGTCTGCCTGGGCCTCCTGCAGGAGGTCATGAGTCTTAAT < 41bp 0.393869672840687 0.729733310470059 0.35387558 0.8331578 prediction 0.459466620940117 Functional Gain - LINC01777 ENSG00000235054 ncRNA_exonic Human lincRNA chr1:4476443 chr1:4476445 . . 0 23 hm5C_associated_SNPs_115320 0 0 0 1 1 LINC01777 chr1:4476372 3'AG 4476372 Downstream 74bp
chr10 5951203 5951203 1 + C T UCEC 5951202 + 5951182 5951222 41 GAGGGACCACCCCCTCCTCCCCGAGGCTGAGGCGTGTGTGC GAGGGACCACCCCCTCCTCCCTGAGGCTGAGGCGTGTGTGC < 41bp 0.530940311608087 0.76066206966712 0.5517242 0.14719808 prediction 0.459443516118066 Functional Gain - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5951202 chr10:5951203 synonymous SNV . 0 22 hm5C_associated_SNPs_115324 0 0 1 0 2 FBXO18 chr10:5951122 3'AG 5951122 Downstream 82bp
chr10 5951203 5951203 1 + C T UCEC 5951202 + 5951182 5951222 41 GAGGGACCACCCCCTCCTCCCCGAGGCTGAGGCGTGTGTGC GAGGGACCACCCCCTCCTCCCTGAGGCTGAGGCGTGTGTGC < 41bp 0.530940311608087 0.76066206966712 0.5517242 0.14719808 prediction 0.459443516118066 Functional Gain - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5951202 chr10:5951203 synonymous SNV . 0 22 hm5C_associated_SNPs_115324 0 0 1 0 2 FBXO18 chr10:5951257 5'GT 5951257 Upstream 55bp
chr16 20441052 20441052 1 + C A rs139695729 20441048 + 20441028 20441068 41 CTGACCGGAGGAGAGGCCCTCAACCCTGACGTGAGGGAGAA CTGACCGGAGGAGAGGCCCTCAACACTGACGTGAGGGAGAA < 41bp 0.295406044055277 0.729713041913546 0.4573093 0.42306548 prediction 0.459426083827092 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20441048 chr16:20441052 nonsynonymous SNV 0.941 1 25 hm5C_associated_SNPs_115329 0 0 0 0 2 ACSM5 chr16:20441000 3'AG 20441000 Downstream 53bp
chr16 20441052 20441052 1 + C A rs139695729 20441048 + 20441028 20441068 41 CTGACCGGAGGAGAGGCCCTCAACCCTGACGTGAGGGAGAA CTGACCGGAGGAGAGGCCCTCAACACTGACGTGAGGGAGAA < 41bp 0.295406044055277 0.729713041913546 0.4573093 0.42306548 prediction 0.459426083827092 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20441048 chr16:20441052 nonsynonymous SNV 0.941 1 25 hm5C_associated_SNPs_115329 0 0 0 0 2 ACSM5 chr16:20441123 5'GT 20441123 Upstream 72bp
chr1 11716011 11716011 1 + T C GBM 11716009 + 11715989 11716029 41 GTCTGCAGCCTCTGGCGGGACCTCATCGACCTCGTGACCCT GTCTGCAGCCTCTGGCGGGACCCCATCGACCTCGTGACCCT < 41bp 0.439086548039098 0.729712724329389 0.0300757 0.013600558 prediction 0.459425448658779 Functional Gain - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11716009 chr1:11716011 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_115330 0 0 0 0 1 FBXO44 chr1:11715997 3'AG 11715997 Downstream 15bp
chr14 24538045 24538045 1 + C T SKCM 24538044 + 24538024 24538064 41 TCCCAAGCCAGTGGCTGTGCCCAGGGGCCGCCAGCCTCCCC TCCCAAGCCAGTGGCTGTGCCTAGGGGCCGCCAGCCTCCCC < 41bp 0.549832030512239 0.779532526594458 0.9403192 0.8250784 prediction 0.459400992164439 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24538044 chr14:24538045 synonymous SNV . 0 22 hm5C_associated_SNPs_115333 0 0 0 0 1 CARMIL3 chr14:24537995 3'AG 24537995 Downstream 51bp
chr11 50376791 50376791 1 + C A rs148558417 50376790 + 50376770 50376810 41 CCAGAACAAAGCATAGGGTACCGGATTATACTCAAAGAGAT CCAGAACAAAGCATAGGGTACAGGATTATACTCAAAGAGAT < 41bp 0.528126506726093 0.757822512360768 0.1394819 0.118867874 prediction 0.45939201126935 Functional Gain - LOC646813 ENSG00000214883 ncRNA_intronic Human unprocessed_pseudogene chr11:50376790 chr11:50376791 . . 0 22 hm5C_associated_SNPs_115335 0 0 0 0 1 LOC646813 chr11:50376850 5'GT 50376850 Upstream 60bp
chr6 168443352 168443352 1 + C T GBM 168443351 + 168443331 168443371 41 TGGAGCACCGTGGCCATGCCCCGTACCGGAACAGCAGGCTC TGGAGCACCGTGGCCATGCCCTGTACCGGAACAGCAGGCTC < 41bp 0.559941338047807 0.789635700808682 0.113713056 0.20915073 prediction 0.459388725521749 Functional Gain - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168443351 chr6:168443352 nonsynonymous SNV 0.002 4 22 hm5C_associated_SNPs_115337 0 0 0 0 1 KIF25 chr6:168443396 5'GT 168443396 Upstream 45bp
chr17 73094203 73094203 1 + C T SKCM 73094202 + 73094182 73094222 41 GATGCTGGGGGGCGTGCTGGCCAGCCTGGGCATGGTGGCCA GATGCTGGGGGGCGTGCTGGCTAGCCTGGGCATGGTGGCCA < 41bp 0.523353441420367 0.753047747814063 0.1310893 0.123689145 prediction 0.459388612787392 Functional Gain - SLC16A5 ENSG00000170190 CDS Human protein_coding chr17:73094202 chr17:73094203 synonymous SNV . 0 22 hm5C_associated_SNPs_115338 0 0 0 0 2 SLC16A5 chr17:73094133 3'AG 73094133 Downstream 71bp
chr17 73094203 73094203 1 + C T SKCM 73094202 + 73094182 73094222 41 GATGCTGGGGGGCGTGCTGGCCAGCCTGGGCATGGTGGCCA GATGCTGGGGGGCGTGCTGGCTAGCCTGGGCATGGTGGCCA < 41bp 0.523353441420367 0.753047747814063 0.1310893 0.123689145 prediction 0.459388612787392 Functional Gain - SLC16A5 ENSG00000170190 CDS Human protein_coding chr17:73094202 chr17:73094203 synonymous SNV . 0 22 hm5C_associated_SNPs_115338 0 0 0 0 2 SLC16A5 chr17:73094276 5'GT 73094276 Upstream 74bp
chr3 10255002 10255002 1 + C G rs35060588 10255001 + 10254981 10255021 41 ACCGATGACTTCAATCAAAACCGCAAAATCAGCCAGGGGAC ACCGATGACTTCAATCAAAACGGCAAAATCAGCCAGGGGAC < 41bp 0.649599512522139 0.879289034526492 0.13014448 0.18472207 prediction 0.459379044008706 Functional Gain - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10255001 chr3:10255002 nonsynonymous SNV 0.133 0 22 hm5C_associated_SNPs_115339 0 0 0 0 1 IRAK2 chr3:10255085 5'GT 10255085 Upstream 84bp
chr10 134013974 134013974 1 + C A rs114312744 134013973 + 134013953 134013993 41 TCACATCACCCCCTGTCAACCCAGACCCCACCACGGCGGAC TCACATCACCCCCTGTCAACCAAGACCCCACCACGGCGGAC < 41bp 0.591953944920698 0.821639765922823 0.058852732 0.17288464 prediction 0.459371642004251 Functional Gain - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134013973 chr10:134013974 nonsynonymous SNV 0.036 5 22 hm5C_associated_SNPs_115340 0 0 0 0 1 DPYSL4 chr10:134014016 5'GT 134014016 Upstream 43bp
chr15 39874870 39874870 1 + C T SKCM 39874869 + 39874849 39874889 41 GAGAATGCTGAGTTGGACGTCCCCATCCAAAGCGTCTTCAC GAGAATGCTGAGTTGGACGTCTCCATCCAAAGCGTCTTCAC < 41bp 0.452283839676969 0.729680344944155 0.07104835 0.9482032 prediction 0.45936068988831 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39874869 chr15:39874870 nonsynonymous SNV 0.982 1 22 hm5C_associated_SNPs_115341 0 0 1 0 1 THBS1 chr15:39874953 5'GT 39874953 Upstream 84bp
chr18 46287965 46287965 1 + A G LIHC 46287962 + 46287942 46287982 41 ACCAGAAGGCTGTGTCCGACCGCAGCTTCGCCTTCACCGCT ACCAGAAGGCTGTGTCCGACCGCGGCTTCGCCTTCACCGCT < 41bp 0.553051681975062 0.782723343959853 0.4038973 0.8875412 prediction 0.459343323969581 Functional Gain - CTIF ENSG00000134030 CDS Human protein_coding chr18:46287962 chr18:46287965 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_115342 0 0 0 0 1 CTIF chr18:46288060 5'GT 46288060 Upstream 96bp
chr10 135053248 135053248 1 + C T UCEC 135053247 + 135053227 135053267 41 GCCTTCACCATGGAGCAGGTCCGCACCTTGGAGGGCGTCTT GCCTTCACCATGGAGCAGGTCTGCACCTTGGAGGGCGTCTT < 41bp 0.475989769277603 0.729670269263207 0.2215724 0.1792289 prediction 0.459340538526414 Functional Gain - VENTX ENSG00000151650 CDS Human protein_coding chr10:135053247 chr10:135053248 nonsynonymous SNV 0.008 1 22 hm5C_associated_SNPs_115343 0 0 0 0 1 VENTX chr10:135053340 5'GT 135053340 Upstream 93bp
chr9 124094767 124094767 1 + C A COAD 124094766 + 124094746 124094786 41 GGATCGGCGGACGCCCATCACCGTGGTGAAGCAAGGCTTTG GGATCGGCGGACGCCCATCACAGTGGTGAAGCAAGGCTTTG < 41bp 0.520358118352347 0.7500199948373 0.88463366 0.90669835 prediction 0.459323752969907 Functional Gain - GSN ENSG00000148180 CDS Human protein_coding chr9:124094766 chr9:124094767 synonymous SNV . 0 22 hm5C_associated_SNPs_115349 0 0 1 0 1 GSN chr9:124094712 3'AG 124094712 Downstream 56bp
chr9 127619095 127619095 1 + T A LUAD 127619091 + 127619071 127619111 41 ATCCAACTGAAGGGCCATGTCACCTGGGTGAAGAGCATAGC ATCCAACTGAAGGGCCATGTCACCAGGGTGAAGAGCATAGC < 41bp 0.668438694458242 0.898092860877521 0.12775514 0.17088303 prediction 0.459308332838558 Functional Gain - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127619091 chr9:127619095 nonsynonymous SNV 0.813 3 25 hm5C_associated_SNPs_115351 0 0 0 0 2 WDR38 chr9:127619011 3'AG 127619011 Downstream 85bp
chr9 127619095 127619095 1 + T A LUAD 127619091 + 127619071 127619111 41 ATCCAACTGAAGGGCCATGTCACCTGGGTGAAGAGCATAGC ATCCAACTGAAGGGCCATGTCACCAGGGTGAAGAGCATAGC < 41bp 0.668438694458242 0.898092860877521 0.12775514 0.17088303 prediction 0.459308332838558 Functional Gain - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127619091 chr9:127619095 nonsynonymous SNV 0.813 3 25 hm5C_associated_SNPs_115351 0 0 0 0 2 WDR38 chr9:127619160 5'GT 127619160 Upstream 66bp
chr12 85677587 85677587 1 + A G UCEC 85677584 + 85677564 85677604 41 GGAGAAAGTCTTTCAGAAAACTCATTACCCGGATGTGTATG GGAGAAAGTCTTTCAGAAAACTCGTTACCCGGATGTGTATG < 41bp 0.517940132973271 0.747593296474914 0.21450135 0.18444881 prediction 0.459306327003286 Functional Gain - ALX1 ENSG00000180318 CDS Human protein_coding chr12:85677584 chr12:85677587 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_115352 0 0 1 0 1 ALX1 chr12:85677654 5'GT 85677654 Upstream 68bp
chr19 51742799 51742799 1 + T C SKCM 51742797 + 51742777 51742817 41 ACCAGAAGAAGTCCAAGTTACATGGCCCCACTGAAACCTCA ACCAGAAGAAGTCCAAGTTACACGGCCCCACTGAAACCTCA < 41bp 0.512605633613203 0.742258100868102 0.15523037 0.118266076 prediction 0.459304934509799 Functional Gain - CD33 ENSG00000105383 CDS Human protein_coding chr19:51742797 chr19:51742799 synonymous SNV . 0 23 hm5C_associated_SNPs_115353 0 0 0 0 1 CD33 chr19:51742773 3'AG 51742773 Downstream 27bp
chr6 26428150 26428150 1 + T C UCEC 26428148 + 26428128 26428168 41 GTGGTGATCCTGCCTGTTATCATGATTATTCTGATGATACC GTGGTGATCCTGCCTGTTATCACGATTATTCTGATGATACC < 41bp 0.555132256452624 0.78478425151725 0.9272324 0.91776145 prediction 0.459303990129251 Functional Gain - BTN2A3P ENSG00000124549 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:26428148 chr6:26428150 . . 0 23 hm5C_associated_SNPs_115354 0 0 0 2 2 BTN2A3P chr6:26428099 3'AG 26428099 Downstream 52bp
chr6 26428150 26428150 1 + T C UCEC 26428148 + 26428128 26428168 41 GTGGTGATCCTGCCTGTTATCATGATTATTCTGATGATACC GTGGTGATCCTGCCTGTTATCACGATTATTCTGATGATACC < 41bp 0.555132256452624 0.78478425151725 0.9272324 0.91776145 prediction 0.459303990129251 Functional Gain - BTN2A3P ENSG00000124549 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:26428148 chr6:26428150 . . 0 23 hm5C_associated_SNPs_115354 0 0 0 2 2 BTN2A3P chr6:26428223 5'GT 26428223 Upstream 74bp
chr6 35211468 35211468 1 + C A LUAD 35211464 + 35211444 35211484 41 GGAGAGAGAAGGGCAGCTCTCCTGCGACCTTTGCCCTGGGA GGAGAGAGAAGGGCAGCTCTCCTGAGACCTTTGCCCTGGGA < 41bp 0.325175397875246 0.729647913890275 0.29330504 0.5219424 prediction 0.45929582778055 Functional Gain - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35211464 chr6:35211468 stopgain 1.000 1 25 hm5C_associated_SNPs_115358 0 0 0 0 2 SCUBE3 chr6:35211371 3'AG 35211371 Downstream 98bp
chr6 35211468 35211468 1 + C A LUAD 35211464 + 35211444 35211484 41 GGAGAGAGAAGGGCAGCTCTCCTGCGACCTTTGCCCTGGGA GGAGAGAGAAGGGCAGCTCTCCTGAGACCTTTGCCCTGGGA < 41bp 0.325175397875246 0.729647913890275 0.29330504 0.5219424 prediction 0.45929582778055 Functional Gain - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35211464 chr6:35211468 stopgain 1.000 1 25 hm5C_associated_SNPs_115358 0 0 0 0 2 SCUBE3 chr6:35211532 5'GT 35211532 Upstream 65bp
chr2 71780265 71780265 1 + T C rs141867897 71780263 + 71780243 71780283 41 AACTACGGGAACAAGTTCGACATGACCTGCCTGCCGCTGGC AACTACGGGAACAAGTTCGACACGACCTGCCTGCCGCTGGC < 41bp 0.490205890970442 0.72964317355985 0.1519664 0.0760842 prediction 0.459286347119701 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71780263 chr2:71780265 nonsynonymous SNV 0.954 0 23 hm5C_associated_SNPs_115363 1 0 0 0 1 DYSF chr2:71780318 5'GT 71780318 Upstream 54bp
chr2 28827625 28827625 1 + C A rs34289907 28827621 + 28827601 28827641 41 AGAACATCCAGCTCCCTGTCCTGGCGGTATGTCCCCTGCCC AGAACATCCAGCTCCCTGTCCTGGAGGTATGTCCCCTGCCC < 41bp 0.33610711694318 0.729635118369339 0.7394591 0.6493249 prediction 0.459270236738677 Functional Gain - PLB1 ENSG00000163803 CDS Human protein_coding chr2:28827621 chr2:28827625 nonsynonymous SNV 0.388 0 25 hm5C_associated_SNPs_115364 0 0 0 0 1 PLB1 chr2:28827626 5'GT 28827626 Upstream 2bp
chr1 52879650 52879650 1 + C T UCEC 52879649 + 52879629 52879669 41 CGCTACAGGAGGAGTAGGAGCCGGTCTCCCAGAAGGTAAAG CGCTACAGGAGGAGTAGGAGCTGGTCTCCCAGAAGGTAAAG < 41bp 0.492802141695863 0.72963156306228 0.49015534 0.32328153 prediction 0.45926312612456 Functional Gain - PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52879649 chr1:52879650 nonsynonymous SNV 0.141 4 22 hm5C_associated_SNPs_115365 0 0 1 0 2 PRPF38A chr1:52879551 3'AG 52879551 Downstream 100bp
chr1 52879650 52879650 1 + C T UCEC 52879649 + 52879629 52879669 41 CGCTACAGGAGGAGTAGGAGCCGGTCTCCCAGAAGGTAAAG CGCTACAGGAGGAGTAGGAGCTGGTCTCCCAGAAGGTAAAG < 41bp 0.492802141695863 0.72963156306228 0.49015534 0.32328153 prediction 0.45926312612456 Functional Gain - PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52879649 chr1:52879650 nonsynonymous SNV 0.141 4 22 hm5C_associated_SNPs_115365 0 0 1 0 2 PRPF38A chr1:52879663 5'GT 52879663 Upstream 14bp
chr18 9815160 9815160 1 + T C COAD 9815158 + 9815138 9815178 41 GGGTCAAGGAGCTGAAAGAACATGGTCCAGAAAACATTGTA GGGTCAAGGAGCTGAAAGAACACGGTCCAGAAAACATTGTA < 41bp 0.452457454397333 0.7296295975572 0.0853793 0.10176325 prediction 0.4592591951144 Functional Gain - RAB31 ENSG00000168461 CDS Human protein_coding chr18:9815158 chr18:9815160 synonymous SNV . 0 23 hm5C_associated_SNPs_115366 0 0 1 0 2 RAB31 chr18:9815113 3'AG 9815113 Downstream 48bp
chr18 9815160 9815160 1 + T C COAD 9815158 + 9815138 9815178 41 GGGTCAAGGAGCTGAAAGAACATGGTCCAGAAAACATTGTA GGGTCAAGGAGCTGAAAGAACACGGTCCAGAAAACATTGTA < 41bp 0.452457454397333 0.7296295975572 0.0853793 0.10176325 prediction 0.4592591951144 Functional Gain - RAB31 ENSG00000168461 CDS Human protein_coding chr18:9815158 chr18:9815160 synonymous SNV . 0 23 hm5C_associated_SNPs_115366 0 0 1 0 2 RAB31 chr18:9815219 5'GT 9815219 Upstream 60bp
chr19 17631780 17631780 1 + C T UCEC 17631779 + 17631759 17631799 41 TTGGAGGACCAGGAGGAAAACCCGCTGCCCGCCGCCCTGGT TTGGAGGACCAGGAGGAAAACTCGCTGCCCGCCGCCCTGGT < 41bp 0.529284523519256 0.758913521336383 0.6304451 0.38064504 prediction 0.459257995634254 Functional Gain - PGLS ENSG00000130313 CDS Human protein_coding chr19:17631779 chr19:17631780 nonsynonymous SNV 0.081 1 22 hm5C_associated_SNPs_115367 0 0 0 0 1 PGLS chr19:17631753 3'AG 17631753 Downstream 28bp
chr1 47276531 47276531 1 + C T SKCM 47276530 + 47276510 47276550 41 GTGTCCTGGGCCCACCAGTTCCCGTATGCCCACCCACTCTG GTGTCCTGGGCCCACCAGTTCTCGTATGCCCACCCACTCTG < 41bp 0.54540576854461 0.775033946408201 0.25164413 0.30379617 prediction 0.459256355727181 Functional Gain - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47276530 chr1:47276531 nonsynonymous SNV 0.001 4 22 hm5C_associated_SNPs_115368 0 0 0 0 2 CYP4B1 chr1:47276480 3'AG 47276480 Downstream 52bp
chr1 47276531 47276531 1 + C T SKCM 47276530 + 47276510 47276550 41 GTGTCCTGGGCCCACCAGTTCCCGTATGCCCACCCACTCTG GTGTCCTGGGCCCACCAGTTCTCGTATGCCCACCCACTCTG < 41bp 0.54540576854461 0.775033946408201 0.25164413 0.30379617 prediction 0.459256355727181 Functional Gain - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47276530 chr1:47276531 nonsynonymous SNV 0.001 4 22 hm5C_associated_SNPs_115368 0 0 0 0 2 CYP4B1 chr1:47276621 5'GT 47276621 Upstream 91bp
chr19 56694509 56694509 1 + C A rs141705754 56694505 + 56694485 56694525 41 GTTGTATTTTTGTTTCTAGACGGGCTCCCCTACTCCCACCC GTTGTATTTTTGTTTCTAGACGGGATCCCCTACTCCCACCC < 41bp 0.692775874692107 0.922403283576654 0.36337298 0.43165523 prediction 0.459254817769096 Functional Gain - GALP ENSG00000197487 CDS Human protein_coding chr19:56694505 chr19:56694509 nonsynonymous SNV 0.019 3 25 hm5C_associated_SNPs_115369 0 0 0 1 2 GALP chr19:56694504 3'AG 56694504 Downstream 6bp
chr19 56694509 56694509 1 + C A rs141705754 56694505 + 56694485 56694525 41 GTTGTATTTTTGTTTCTAGACGGGCTCCCCTACTCCCACCC GTTGTATTTTTGTTTCTAGACGGGATCCCCTACTCCCACCC < 41bp 0.692775874692107 0.922403283576654 0.36337298 0.43165523 prediction 0.459254817769096 Functional Gain - GALP ENSG00000197487 CDS Human protein_coding chr19:56694505 chr19:56694509 nonsynonymous SNV 0.019 3 25 hm5C_associated_SNPs_115369 0 0 0 1 2 GALP chr19:56694581 5'GT 56694581 Upstream 73bp
chr7 142013025 142013025 1 + C A LUAD 142013024 + 142013004 142013044 41 GTCAGAGGCCCCATCTCAGACCCGAGGCTAGCATGGGCTGC GTCAGAGGCCCCATCTCAGACACGAGGCTAGCATGGGCTGC < 41bp 0.524064825289523 0.753684678678934 0.27132007 0.2888154 prediction 0.459239706778823 Functional Gain - TRY2P;MTRNR2L6 ENSG00000211710 UTR5 Human TR_V_gene chr7:142013024 chr7:142013025 . . 0 22 hm5C_associated_SNPs_115371 0 0 0 0 1 TRY2P;MTRNR2L6 chr7:142013084 5'GT 142013084 Upstream 60bp
chr7 6630082 6630082 1 + C A CESC 6630081 + 6630061 6630101 41 GGAGTTCGTGTTCCAGGTGCCCAAGGAGCGCAGCGCGCAGC GGAGTTCGTGTTCCAGGTGCCAAAGGAGCGCAGCGCGCAGC < 41bp 0.471789068480882 0.729616416038491 0.44262826 0.89414144 prediction 0.459232832076981 Functional Gain - C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6630081 chr7:6630082 synonymous SNV . 0 22 hm5C_associated_SNPs_115372 0 0 1 0 1 C7orf26 chr7:6630106 5'GT 6630106 Upstream 25bp
chr19 39868390 39868390 1 + A G UCEC 39868387 + 39868367 39868407 41 TCCACCAGCTCCAGCTCCCACTGATGGCAGTGAGCCTGCCC TCCACCAGCTCCAGCTCCCACTGGTGGCAGTGAGCCTGCCC < 41bp 0.540326462984301 0.769936810603399 0.26657307 0.37844226 prediction 0.459220695238197 Functional Gain - SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39868387 chr19:39868390 nonsynonymous SNV 0.976 1 24 hm5C_associated_SNPs_115375 0 0 1 0 1 SAMD4B chr19:39868464 5'GT 39868464 Upstream 75bp
chr12 7303566 7303566 1 + C G LUSC 7303562 + 7303542 7303582 41 ATGAACCGGGTTGCCCACCCCAGCCACGTGCTCAGCTCCCA ATGAACCGGGTTGCCCACCCCAGCGACGTGCTCAGCTCCCA < 41bp 0.432052964496164 0.729603507349779 0.21146432 0.75921094 prediction 0.459207014699559 Functional Gain - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7303562 chr12:7303566 nonsynonymous SNV 0.988 3 25 hm5C_associated_SNPs_115377 0 0 1 0 2 CLSTN3 chr12:7303524 3'AG 7303524 Downstream 43bp
chr12 7303566 7303566 1 + C G LUSC 7303562 + 7303542 7303582 41 ATGAACCGGGTTGCCCACCCCAGCCACGTGCTCAGCTCCCA ATGAACCGGGTTGCCCACCCCAGCGACGTGCTCAGCTCCCA < 41bp 0.432052964496164 0.729603507349779 0.21146432 0.75921094 prediction 0.459207014699559 Functional Gain - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7303562 chr12:7303566 nonsynonymous SNV 0.988 3 25 hm5C_associated_SNPs_115377 0 0 1 0 2 CLSTN3 chr12:7303659 5'GT 7303659 Upstream 94bp
chr3 186383932 186383932 1 + A G LIHC 186383929 + 186383909 186383949 41 AGGCTGAGAAAGCTCTAGACCTGATCAATAAAAGGCGACGG AGGCTGAGAAAGCTCTAGACCTGGTCAATAAAAGGCGACGG < 41bp 0.540890737739147 0.770490771476217 0.16865876 0.18959737 prediction 0.459200067474141 Functional Gain - HRG ENSG00000113905 CDS Human protein_coding chr3:186383929 chr3:186383932 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_115378 0 0 0 0 1 HRG chr3:186384003 5'GT 186384003 Upstream 72bp
chr20 31626729 31626729 1 + C T LAML 31626728 + 31626708 31626748 41 TCTGTAGATTGGTGAGCTGCCCCCACAAACCACCAAGACCC TCTGTAGATTGGTGAGCTGCCTCCACAAACCACCAAGACCC < 41bp 0.584922430392168 0.814517198728466 0.030563265 0.9270872 prediction 0.459189536672595 Functional Gain - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31626728 chr20:31626729 synonymous SNV . 0 22 hm5C_associated_SNPs_115379 0 0 0 0 2 BPIFB6 chr20:31626715 3'AG 31626715 Downstream 15bp
chr20 31626729 31626729 1 + C T LAML 31626728 + 31626708 31626748 41 TCTGTAGATTGGTGAGCTGCCCCCACAAACCACCAAGACCC TCTGTAGATTGGTGAGCTGCCTCCACAAACCACCAAGACCC < 41bp 0.584922430392168 0.814517198728466 0.030563265 0.9270872 prediction 0.459189536672595 Functional Gain - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31626728 chr20:31626729 synonymous SNV . 0 22 hm5C_associated_SNPs_115379 0 0 0 0 2 BPIFB6 chr20:31626768 5'GT 31626768 Upstream 40bp
chr3 44754177 44754177 1 + C G rs6771160 44754176 + 44754156 44754196 41 GTTAAGGCTGGTGTCCTGGCCCCAGTCCACCTCTGGGAGCG GTTAAGGCTGGTGTCCTGGCCGCAGTCCACCTCTGGGAGCG < 41bp 0.43709321788907 0.72958557951399 0.25055778 0.40988356 prediction 0.459171159027981 Functional Gain - ZNF502 ENSG00000196653 UTR5 Human protein_coding chr3:44754176 chr3:44754177 . . 0 22 hm5C_associated_SNPs_115383 0 0 0 0 1 ZNF502 chr3:44754232 5'GT 44754232 Upstream 56bp
chr7 73638999 73638999 1 + C T HNSC 73638998 + 73638978 73639018 41 AGAGAGAAGCATCCCCTGGCCCGGTGGGAAGCCCAGACGAG AGAGAGAAGCATCCCCTGGCCTGGTGGGAAGCCCAGACGAG < 41bp 0.498412147426063 0.72957835919405 0.4159954 0.34496865 prediction 0.4591567183881 Functional Gain - LAT2 ENSG00000086730 CDS Human protein_coding chr7:73638998 chr7:73638999 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_115385 0 0 0 0 2 LAT2 chr7:73638969 3'AG 73638969 Downstream 31bp
chr7 73638999 73638999 1 + C T HNSC 73638998 + 73638978 73639018 41 AGAGAGAAGCATCCCCTGGCCCGGTGGGAAGCCCAGACGAG AGAGAGAAGCATCCCCTGGCCTGGTGGGAAGCCCAGACGAG < 41bp 0.498412147426063 0.72957835919405 0.4159954 0.34496865 prediction 0.4591567183881 Functional Gain - LAT2 ENSG00000086730 CDS Human protein_coding chr7:73638998 chr7:73638999 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_115385 0 0 0 0 2 LAT2 chr7:73639090 5'GT 73639090 Upstream 92bp
chr19 51363308 51363308 1 + C T LUSC 51363307 + 51363287 51363327 41 CAGTGAACCATGTGCCCTGCCCGAAAGGCCTTCCCTGTACA CAGTGAACCATGTGCCCTGCCTGAAAGGCCTTCCCTGTACA < 41bp 0.518005716023727 0.74757572360951 0.1550993 0.20868379 prediction 0.459140015171566 Functional Gain - KLK3 ENSG00000142515 CDS Human protein_coding chr19:51363307 chr19:51363308 synonymous SNV . 0 22 hm5C_associated_SNPs_115390 0 0 0 0 1 KLK3 chr19:51363228 3'AG 51363228 Downstream 81bp
chr4 88903719 88903719 1 + C T SKCM 88903718 + 88903698 88903738 41 AATGGTGCATACAAGGCCATCCCCGTTGCCCAGGACCTGAA AATGGTGCATACAAGGCCATCTCCGTTGCCCAGGACCTGAA < 41bp 0.577441636076424 0.807010427570182 0.15220258 0.55255735 prediction 0.459137582987517 Functional Gain - SPP1 ENSG00000118785 CDS Human protein_coding chr4:88903718 chr4:88903719 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_115391 0 0 1 0 1 SPP1 chr4:88903644 3'AG 88903644 Downstream 76bp
chr20 18295778 18295778 1 + C T SKCM 18295777 + 18295757 18295797 41 GGTTTCTCCAGTCAGAAATTCCCCATGCAGCATGTGCTGTG GGTTTCTCCAGTCAGAAATTCTCCATGCAGCATGTGCTGTG < 41bp 0.554908643715904 0.784473860697108 0.10888213 0.9702295 prediction 0.459130433962407 Functional Gain - ZNF133 ENSG00000125846 CDS Human protein_coding chr20:18295777 chr20:18295778 nonsynonymous SNV 0.233 0 22 hm5C_associated_SNPs_115393 0 0 1 0 2 ZNF133 chr20:18295713 3'AG 18295713 Downstream 66bp
chr20 18295778 18295778 1 + C T SKCM 18295777 + 18295757 18295797 41 GGTTTCTCCAGTCAGAAATTCCCCATGCAGCATGTGCTGTG GGTTTCTCCAGTCAGAAATTCTCCATGCAGCATGTGCTGTG < 41bp 0.554908643715904 0.784473860697108 0.10888213 0.9702295 prediction 0.459130433962407 Functional Gain - ZNF133 ENSG00000125846 CDS Human protein_coding chr20:18295777 chr20:18295778 nonsynonymous SNV 0.233 0 22 hm5C_associated_SNPs_115393 0 0 1 0 2 ZNF133 chr20:18295716 3'AG 18295716 Downstream 63bp
chr12 100612275 100612275 1 + C T LUSC 100612274 + 100612254 100612294 41 CCAATGAGAGATTTGCTGTTCCGGAAATACTCTTTAATCCT CCAATGAGAGATTTGCTGTTCTGGAAATACTCTTTAATCCT < 41bp 0.545125096263309 0.774689471039945 0.09802553 0.053810924 prediction 0.459128749553271 Functional Gain - ACTR6 ENSG00000075089 CDS Human protein_coding chr12:100612274 chr12:100612275 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_115395 0 0 1 0 2 ACTR6 chr12:100612193 3'AG 100612193 Downstream 83bp
chr12 100612275 100612275 1 + C T LUSC 100612274 + 100612254 100612294 41 CCAATGAGAGATTTGCTGTTCCGGAAATACTCTTTAATCCT CCAATGAGAGATTTGCTGTTCTGGAAATACTCTTTAATCCT < 41bp 0.545125096263309 0.774689471039945 0.09802553 0.053810924 prediction 0.459128749553271 Functional Gain - ACTR6 ENSG00000075089 CDS Human protein_coding chr12:100612274 chr12:100612275 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_115395 0 0 1 0 2 ACTR6 chr12:100612364 5'GT 100612364 Upstream 90bp
chr1 32086654 32086654 1 + C A rs61749523 32086650 + 32086630 32086670 41 CTGCCTGAGCTAGCCAACCGCACACGGCTCTTCTCAGTCTG CTGCCTGAGCTAGCCAACCGCACAAGGCTCTTCTCAGTCTG < 41bp 0.311823093422923 0.729562928359061 0.06884694 0.25908995 prediction 0.459125856718121 Functional Gain - HCRTR1 ENSG00000121764 CDS Human protein_coding chr1:32086650 chr1:32086654 synonymous SNV . 0 25 hm5C_associated_SNPs_115396 0 0 0 0 1 HCRTR1 chr1:32086687 5'GT 32086687 Upstream 34bp
chr8 27528492 27528492 1 + C T STAD 27528491 + 27528471 27528511 41 GGCCTGTTGGCGGCAGAGGCCCGAAAGGAGACCCCGGCAGC GGCCTGTTGGCGGCAGAGGCCTGAAAGGAGACCCCGGCAGC < 41bp 0.486251960791388 0.729562405053875 0.37910697 0.3281048 prediction 0.459124810107751 Functional Gain - SCARA3 ENSG00000168077 CDS Human protein_coding chr8:27528491 chr8:27528492 nonsynonymous SNV 0.182 3 22 hm5C_associated_SNPs_115397 0 0 0 0 1 SCARA3 chr8:27528417 3'AG 27528417 Downstream 76bp
chr7 5922228 5922228 1 + A G UCEC 5922225 + 5922205 5922245 41 TCCGGTTCATAGACAACGACCAGAGCGGGTACCTGGATGAA TCCGGTTCATAGACAACGACCAGGGCGGGTACCTGGATGAA < 41bp 0.542947161490791 0.772497092591343 0.52825814 0.85016894 prediction 0.459099862201103 Functional Gain - OCM ENSG00000122543 CDS Human protein_coding chr7:5922225 chr7:5922228 nonsynonymous SNV 0.981 4 24 hm5C_associated_SNPs_115400 0 0 0 0 1 OCM chr7:5922256 5'GT 5922256 Upstream 29bp
chr3 148804245 148804245 1 + T A rs150540969 148804241 + 148804221 148804261 41 CGGGGACAAATTCCGAGCGCCGGATCAGGAGCGCACGACTG CGGGGACAAATTCCGAGCGCCGGAACAGGAGCGCACGACTG < 41bp 0.59583001483827 0.825379346309132 0.90454423 0.8954716 prediction 0.459098662941723 Functional Gain - HLTF-AS1 ENSG00000239718 ncRNA_exonic Human antisense chr3:148804241 chr3:148804245 . . 0 25 hm5C_associated_SNPs_115402 0 0 0 0 1 HLTF-AS1 chr3:148804265 5'GT 148804265 Upstream 21bp
chr11 7663602 7663602 1 + C T UCEC 7663601 + 7663581 7663621 41 GAGTTTCGACGAGGTGGGCTCCGGGCAACCGCAGGGCCAAG GAGTTTCGACGAGGTGGGCTCTGGGCAACCGCAGGGCCAAG < 41bp 0.489782040922174 0.729544774933587 0.8822714 0.7269511 prediction 0.459089549867174 Functional Gain - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7663601 chr11:7663602 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_115405 0 0 0 0 1 PPFIBP2 chr11:7663529 3'AG 7663529 Downstream 74bp
chr1 150463976 150463976 1 + C T SKCM 150463975 + 150463955 150463995 41 GCTTCACGGGATCAGCTTCGCCAGTTGTTCAAGGTGGGGTG GCTTCACGGGATCAGCTTCGCTAGTTGTTCAAGGTGGGGTG < 41bp 0.495572638500053 0.729542411313008 0.16753042 0.18380147 prediction 0.459084822626015 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150463975 chr1:150463976 stopgain 0.966 0 22 hm5C_associated_SNPs_115406 0 0 1 0 1 TARS2 chr1:150463987 5'GT 150463987 Upstream 12bp
chr15 80872883 80872883 1 + C T STAD 80872882 + 80872862 80872902 41 CAGGGAGTCGTCCGCCCTTTCCGGGACAGGTATGGGCATCT CAGGGAGTCGTCCGCCCTTTCTGGGACAGGTATGGGCATCT < 41bp 0.556453482927299 0.785979073063994 0.9189147 0.88874507 prediction 0.459051180273391 Functional Gain - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80872882 chr15:80872883 nonsynonymous SNV 0.469 0 22 hm5C_associated_SNPs_115411 0 0 0 0 1 ARNT2 chr15:80872890 5'GT 80872890 Upstream 8bp
chr19 45448036 45448036 1 + T C rs1132899 45448034 + 45448014 45448054 41 CCAGAGGCCCAGGAAGGAACCCTGAGCCCCCCACCAAAGCT CCAGAGGCCCAGGAAGGAACCCCGAGCCCCCCACCAAAGCT < 41bp 0.570382593107169 0.799907951603201 0.2674923 0.34950686 prediction 0.459050716992064 Functional Gain - APOC4 ENSG00000224916;ENSG00000267467 CDS Human other chr19:45448034 chr19:45448036 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_115412 0 0 0 0 1 APOC4 chr19:45448006 3'AG 45448006 Downstream 31bp
chr19 36257685 36257685 1 + C T COAD 36257684 + 36257664 36257704 41 TACAGCATCCCCGGCACCAGCCCAGGCCCAGACCCCCACCC TACAGCATCCCCGGCACCAGCTCAGGCCCAGACCCCCACCC < 41bp 0.548219551191091 0.777744315886793 0.25539467 0.24802989 prediction 0.459049529391403 Functional Gain - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36257684 chr19:36257685 synonymous SNV . 0 22 hm5C_associated_SNPs_115413 0 0 1 0 1 PROSER3 chr19:36257669 3'AG 36257669 Downstream 17bp
chr3 36524562 36524562 1 + C T SKCM 36524561 + 36524541 36524581 41 AGTGCACAGATGGCCTGGCACCCCAGCGGTGCATGGGCAAG AGTGCACAGATGGCCTGGCACTCCAGCGGTGCATGGGCAAG < 41bp 0.607152106368669 0.836666632213144 0.09996036 0.93532 prediction 0.45902905168895 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36524561 chr3:36524562 nonsynonymous SNV 0.988 0 22 hm5C_associated_SNPs_115416 0 0 0 0 2 STAC chr3:36524484 3'AG 36524484 Downstream 79bp
chr3 36524562 36524562 1 + C T SKCM 36524561 + 36524541 36524581 41 AGTGCACAGATGGCCTGGCACCCCAGCGGTGCATGGGCAAG AGTGCACAGATGGCCTGGCACTCCAGCGGTGCATGGGCAAG < 41bp 0.607152106368669 0.836666632213144 0.09996036 0.93532 prediction 0.45902905168895 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36524561 chr3:36524562 nonsynonymous SNV 0.988 0 22 hm5C_associated_SNPs_115416 0 0 0 0 2 STAC chr3:36524584 5'GT 36524584 Upstream 23bp
chr4 113568387 113568387 1 + C T UCEC 113568386 + 113568366 113568406 41 AAGAAAAAGAAGAAGAAAGGCCGAATGAAAAAGGAAGACAA AAGAAAAAGAAGAAGAAAGGCTGAATGAAAAAGGAAGACAA < 41bp 0.534053397765649 0.763566527895851 0.70533967 0.6779802 prediction 0.459026260260404 Functional Gain - LARP7 ENSG00000174720 CDS Human protein_coding chr4:113568386 chr4:113568387 stopgain 0.962 1 22 hm5C_associated_SNPs_115417 0 0 1 0 1 LARP7 chr4:113568355 3'AG 113568355 Downstream 33bp
chr19 42091845 42091845 1 + C A LAML 42091844 + 42091824 42091864 41 CAGCAGCCCCCAGCCTCCACCCCCGGTGAGTGTCCCTTCAG CAGCAGCCCCCAGCCTCCACCACCGGTGAGTGTCCCTTCAG < 41bp 0.472053858713704 0.729509186655046 0.2386375 0.6665399 prediction 0.459018373310091 Functional Gain - CEACAM21 ENSG00000007129 CDS Human protein_coding chr19:42091844 chr19:42091845 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_115420 0 0 0 0 2 CEACAM21 chr19:42091796 3'AG 42091796 Downstream 50bp
chr19 42091845 42091845 1 + C A LAML 42091844 + 42091824 42091864 41 CAGCAGCCCCCAGCCTCCACCCCCGGTGAGTGTCCCTTCAG CAGCAGCCCCCAGCCTCCACCACCGGTGAGTGTCCCTTCAG < 41bp 0.472053858713704 0.729509186655046 0.2386375 0.6665399 prediction 0.459018373310091 Functional Gain - CEACAM21 ENSG00000007129 CDS Human protein_coding chr19:42091844 chr19:42091845 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_115420 0 0 0 0 2 CEACAM21 chr19:42091848 5'GT 42091848 Upstream 4bp
chr15 25436471 25436471 1 + C A UCEC 25436467 + 25436447 25436487 41 AGCTGAAGCTCAGGCCCTTCCTGGCACCCTGGTCTGCTGCA AGCTGAAGCTCAGGCCCTTCCTGGAACCCTGGTCTGCTGCA < 41bp 0.672977202826901 0.902483106560592 0.05523017 0.16263148 prediction 0.459011807467381 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25436467 chr15:25436471 . . 0 25 hm5C_associated_SNPs_115421 0 0 0 1 1 SNHG14 chr15:25436497 5'GT 25436497 Upstream 27bp
chr7 150769158 150769158 1 + C A KIRP 150769154 + 150769134 150769174 41 GTCCGCTTCGTCTCCCGCTTCACCCAGGAGATCTTCGCCTT GTCCGCTTCGTCTCCCGCTTCACCAAGGAGATCTTCGCCTT < 41bp 0.290839156350242 0.729504992352194 0.016013116 0.11888477 prediction 0.459009984704387 Functional Gain - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150769154 chr7:150769158 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_115422 0 0 1 0 1 SLC4A2 chr7:150769223 5'GT 150769223 Upstream 66bp
chr15 76632802 76632802 1 + C A PRAD 76632798 + 76632778 76632818 41 GTGGAGATGACCGGCCTGAGCCCGCGGGTCATCCGCGTCTG GTGGAGATGACCGGCCTGAGCCCGAGGGTCATCCGCGTCTG < 41bp 0.702639159003394 0.932140760457655 0.4993947 0.5140094 prediction 0.459003202908523 Functional Gain - ISL2 ENSG00000159556 CDS Human protein_coding chr15:76632798 chr15:76632802 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_115424 0 0 1 0 1 ISL2 chr15:76632900 5'GT 76632900 Upstream 99bp
chrX 2990116 2990116 1 + C A PRAD 2990115 + 2990095 2990135 41 TGTGCACTCTTGAACACATGCCAGGCACACAGGGTGCATGA TGTGCACTCTTGAACACATGCAAGGCACACAGGGTGCATGA < 41bp 0.458861480540071 0.729501355269564 0.036956996 0.15809897 prediction 0.459002710539129 Functional Gain - ARSF ENSG00000062096 CDS Human protein_coding chrX:2990115 chrX:2990116 nonsynonymous SNV 0.008 1 22 hm5C_associated_SNPs_115425 0 0 0 0 1 ARSF chrX:2990067 3'AG 2990067 Downstream 50bp
chr2 71189914 71189914 1 + C G HNSC 71189910 + 71189890 71189930 41 CCTGGCTACACCTCCAGGATCGAGCGGATCATCACCCCGCG CCTGGCTACACCTCCAGGATCGAGGGGATCATCACCCCGCG < 41bp 0.646083270511257 0.875579791433772 0.9354591 0.9587405 prediction 0.45899304184503 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71189910 chr2:71189914 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_115426 0 0 0 0 1 ATP6V1B1 chr2:71189907 3'AG 71189907 Downstream 8bp
chr15 25427354 25427354 1 + C A LUAD 25427353 + 25427333 25427373 41 TGTTTCCCCAGATGTTGAGCCCAGAGGAAGACTTGCACTGG TGTTTCCCCAGATGTTGAGCCAAGAGGAAGACTTGCACTGG < 41bp 0.490893757370712 0.729495604311169 0.27568734 0.70553654 prediction 0.458991208622337 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25427353 chr15:25427354 . . 0 22 hm5C_associated_SNPs_115428 0 0 0 3 1 SNHG14 chr15:25427344 3'AG 25427344 Downstream 11bp
chr2 71299832 71299832 1 + C T LUAD 71299831 + 71299811 71299851 41 GCTCATCAACCCTGATGGCTCCGAGAGTGGCTGCGGCGGCT GCTCATCAACCCTGATGGCTCTGAGAGTGGCTGCGGCGGCT < 41bp 0.553875814916692 0.783368302976472 0.3004552 0.16657466 prediction 0.45898497611956 Functional Gain - NAGK ENSG00000124357 CDS Human protein_coding chr2:71299831 chr2:71299832 synonymous SNV . 0 22 hm5C_associated_SNPs_115429 0 0 1 0 3 NAGK chr2:71299771 3'AG 71299771 Downstream 62bp
chr2 71299832 71299832 1 + C T LUAD 71299831 + 71299811 71299851 41 GCTCATCAACCCTGATGGCTCCGAGAGTGGCTGCGGCGGCT GCTCATCAACCCTGATGGCTCTGAGAGTGGCTGCGGCGGCT < 41bp 0.553875814916692 0.783368302976472 0.3004552 0.16657466 prediction 0.45898497611956 Functional Gain - NAGK ENSG00000124357 CDS Human protein_coding chr2:71299831 chr2:71299832 synonymous SNV . 0 22 hm5C_associated_SNPs_115429 0 0 1 0 3 NAGK chr2:71299777 3'AG 71299777 Downstream 56bp
chr2 71299832 71299832 1 + C T LUAD 71299831 + 71299811 71299851 41 GCTCATCAACCCTGATGGCTCCGAGAGTGGCTGCGGCGGCT GCTCATCAACCCTGATGGCTCTGAGAGTGGCTGCGGCGGCT < 41bp 0.553875814916692 0.783368302976472 0.3004552 0.16657466 prediction 0.45898497611956 Functional Gain - NAGK ENSG00000124357 CDS Human protein_coding chr2:71299831 chr2:71299832 synonymous SNV . 0 22 hm5C_associated_SNPs_115429 0 0 1 0 3 NAGK chr2:71299881 5'GT 71299881 Upstream 50bp
chr7 99818295 99818295 1 + C T rs140026168 99818294 + 99818274 99818314 41 CTGCTGCGCCGACATAAGCACCGGTGAGACCTGGTCCCTGT CTGCTGCGCCGACATAAGCACTGGTGAGACCTGGTCCCTGT < 41bp 0.508213023828811 0.737676099289521 0.395584 0.22027147 prediction 0.45892615092142 Functional Gain - PVRIG ENSG00000213413 CDS Human protein_coding chr7:99818294 chr7:99818295 nonsynonymous SNV 0.018 0 22 hm5C_associated_SNPs_115436 0 0 0 0 1 PVRIG chr7:99818296 5'GT 99818296 Upstream 2bp
chr16 21181780 21181780 1 + C T SKCM 21181779 + 21181759 21181799 41 TGGTGGCCTTTATGAAGTCTCCAGTGGGTCAGTACTTGGAC TGGTGGCCTTTATGAAGTCTCTAGTGGGTCAGTACTTGGAC < 41bp 0.527365657854481 0.756828606541754 0.10263392 0.26836628 prediction 0.458925897374545 Functional Gain - TMEM159 ENSG00000011638 CDS Human protein_coding chr16:21181779 chr16:21181780 nonsynonymous SNV 0.979 0 22 hm5C_associated_SNPs_115437 0 0 1 0 1 TMEM159 chr16:21181758 3'AG 21181758 Downstream 23bp
chr9 97823033 97823033 1 + A G COAD 97823030 + 97823010 97823050 41 ATCTCTTGGAGCAGAAGACTCTGAGCCCCCGAACTCTGCAA ATCTCTTGGAGCAGAAGACTCTGGGCCCCCGAACTCTGCAA < 41bp 0.510677073984141 0.74013088528726 0.9475294 0.9578942 prediction 0.458907622606239 Functional Gain - C9orf3 ENSG00000148120 CDS Human protein_coding chr9:97823030 chr9:97823033 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_115440 0 0 1 0 2 C9orf3 chr9:97822976 3'AG 97822976 Downstream 58bp
chr9 97823033 97823033 1 + A G COAD 97823030 + 97823010 97823050 41 ATCTCTTGGAGCAGAAGACTCTGAGCCCCCGAACTCTGCAA ATCTCTTGGAGCAGAAGACTCTGGGCCCCCGAACTCTGCAA < 41bp 0.510677073984141 0.74013088528726 0.9475294 0.9578942 prediction 0.458907622606239 Functional Gain - C9orf3 ENSG00000148120 CDS Human protein_coding chr9:97823030 chr9:97823033 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_115440 0 0 1 0 2 C9orf3 chr9:97823092 5'GT 97823092 Upstream 60bp
chr19 41060521 41060521 1 + C T UCEC 41060520 + 41060500 41060540 41 GCGCAGCTGTCGCGCCAGTGCCGGGCGCTGCTGGAGATGGG GCGCAGCTGTCGCGCCAGTGCTGGGCGCTGCTGGAGATGGG < 41bp 0.507848387763208 0.737300037697233 0.8731979 0.5958738 prediction 0.45890329986805 Functional Gain - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41060520 chr19:41060521 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_115441 0 0 0 0 2 SPTBN4 chr19:41060422 3'AG 41060422 Downstream 100bp
chr19 41060521 41060521 1 + C T UCEC 41060520 + 41060500 41060540 41 GCGCAGCTGTCGCGCCAGTGCCGGGCGCTGCTGGAGATGGG GCGCAGCTGTCGCGCCAGTGCTGGGCGCTGCTGGAGATGGG < 41bp 0.507848387763208 0.737300037697233 0.8731979 0.5958738 prediction 0.45890329986805 Functional Gain - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41060520 chr19:41060521 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_115441 0 0 0 0 2 SPTBN4 chr19:41060552 5'GT 41060552 Upstream 32bp
chr4 76489417 76489417 1 + C T STAD 76489416 + 76489396 76489436 41 CACTCACCCCTCCACCTGCCCCGAGGAGTCCGGTCACAAGG CACTCACCCCTCCACCTGCCCTGAGGAGTCCGGTCACAAGG < 41bp 0.510683535244872 0.740132134102275 0.16094124 0.05418834 prediction 0.458897197714806 Functional Gain - C4orf26 ENSG00000174792 CDS Human protein_coding chr4:76489416 chr4:76489417 stopgain 0.000 0 22 hm5C_associated_SNPs_115443 0 0 0 0 2 C4orf26 chr4:76489324 3'AG 76489324 Downstream 94bp
chr4 76489417 76489417 1 + C T STAD 76489416 + 76489396 76489436 41 CACTCACCCCTCCACCTGCCCCGAGGAGTCCGGTCACAAGG CACTCACCCCTCCACCTGCCCTGAGGAGTCCGGTCACAAGG < 41bp 0.510683535244872 0.740132134102275 0.16094124 0.05418834 prediction 0.458897197714806 Functional Gain - C4orf26 ENSG00000174792 CDS Human protein_coding chr4:76489416 chr4:76489417 stopgain 0.000 0 22 hm5C_associated_SNPs_115443 0 0 0 0 2 C4orf26 chr4:76489462 5'GT 76489462 Upstream 46bp
chr8 101199371 101199371 1 + T C LUSC 101199368 + 101199348 101199388 41 GAGCATATCAGCGCTTCCCACTGTAGTTGCCTATAACAATC GAGCATATCAGCGCTTCCCACTGCAGTTGCCTATAACAATC < 41bp 0.502269368522058 0.731710205020393 0.08609441 0.11190781 prediction 0.458881672996671 Functional Gain - SPAG1 ENSG00000104450 CDS Human protein_coding chr8:101199368 chr8:101199371 nonsynonymous SNV 0.028 0 24 hm5C_associated_SNPs_115447 0 0 0 0 1 SPAG1 chr8:101199348 3'AG 101199348 Downstream 24bp
chr15 75641271 75641271 1 + C T ESCA 75641270 + 75641250 75641290 41 CCTGAGGGCCCCGAGCTGCACCTGGCCAGCCAGTTTGTGAA CCTGAGGGCCCCGAGCTGCACTTGGCCAGCCAGTTTGTGAA < 41bp 0.493139492437893 0.729436368430132 0.20576525 0.46735477 prediction 0.458872736860264 Functional Gain - NEIL1 ENSG00000140398 CDS Human protein_coding chr15:75641270 chr15:75641271 synonymous SNV . 0 22 hm5C_associated_SNPs_115448 0 0 0 0 1 NEIL1 chr15:75641225 3'AG 75641225 Downstream 47bp
chr4 71115137 71115137 1 + T C LAML 71115135 + 71115115 71115155 41 AGTCCATCATCACGAGCACCCCTGAGACAACCACAGTTGCA AGTCCATCATCACGAGCACCCCCGAGACAACCACAGTTGCA < 41bp 0.467066670137607 0.729435800453323 0.13234499 0.12554312 prediction 0.458871600906645 Functional Gain - CSN3 ENSG00000171209 CDS Human protein_coding chr4:71115135 chr4:71115137 synonymous SNV . 0 23 hm5C_associated_SNPs_115449 0 0 0 0 1 CSN3 chr4:71115210 5'GT 71115210 Upstream 74bp
chr17 20239367 20239367 1 + T A LAML 20239363 + 20239343 20239383 41 TCCATGACCTGTGCCAATCACAGCTACCAGAAAACAAAGAG TCCATGACCTGTGCCAATCACAGCAACCAGAAAACAAAGAG < 41bp 0.443435556515621 0.729434991033011 0.3840705 0.33552036 prediction 0.458869982066023 Functional Gain - CCDC144CP ENSG00000154898 ncRNA_exonic Human transcribed_processed_pseudogene chr17:20239363 chr17:20239367 . . 0 25 hm5C_associated_SNPs_115450 0 0 0 0 1 CCDC144CP chr17:20239393 5'GT 20239393 Upstream 27bp
chr22 21377631 21377631 1 + C A STAD 21377627 + 21377607 21377647 41 TGCCGCTATGAACCACAATTCAGCCCCTACTGTCCCGTGTT TGCCGCTATGAACCACAATTCAGCACCTACTGTCCCGTGTT < 41bp 0.301400247994262 0.729430812670637 0.16104653 0.15149617 prediction 0.458861625341275 Functional Gain - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21377627 chr22:21377631 nonsynonymous SNV 0.464 4 25 hm5C_associated_SNPs_115451 0 0 0 0 2 P2RX6 chr22:21377564 3'AG 21377564 Downstream 68bp
chr22 21377631 21377631 1 + C A STAD 21377627 + 21377607 21377647 41 TGCCGCTATGAACCACAATTCAGCCCCTACTGTCCCGTGTT TGCCGCTATGAACCACAATTCAGCACCTACTGTCCCGTGTT < 41bp 0.301400247994262 0.729430812670637 0.16104653 0.15149617 prediction 0.458861625341275 Functional Gain - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21377627 chr22:21377631 nonsynonymous SNV 0.464 4 25 hm5C_associated_SNPs_115451 0 0 0 0 2 P2RX6 chr22:21377705 5'GT 21377705 Upstream 75bp
chr4 60044 60044 1 + C T READ 60043 + 60023 60063 41 ATGAGACAGCAGCCAAACCCCCAGGTAGGTGAGACTGAATG ATGAGACAGCAGCCAAACCCCTAGGTAGGTGAGACTGAATG < 41bp 0.49473545743397 0.729428067027952 0.12150085 0.12744471 prediction 0.458856134055905 Functional Gain - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:60043 chr4:60044 nonsynonymous SNV 0.289 3 22 hm5C_associated_SNPs_115453 0 0 1 12 2 ZNF595;ZNF718 chr4:59951 3'AG 59951 Downstream 94bp
chr4 60044 60044 1 + C T READ 60043 + 60023 60063 41 ATGAGACAGCAGCCAAACCCCCAGGTAGGTGAGACTGAATG ATGAGACAGCAGCCAAACCCCTAGGTAGGTGAGACTGAATG < 41bp 0.49473545743397 0.729428067027952 0.12150085 0.12744471 prediction 0.458856134055905 Functional Gain - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:60043 chr4:60044 nonsynonymous SNV 0.289 3 22 hm5C_associated_SNPs_115453 0 0 1 12 2 ZNF595;ZNF718 chr4:60046 5'GT 60046 Upstream 3bp
chr14 105054196 105054196 1 + C A rs113768792 105054195 + 105054175 105054215 41 GCGCGTGTGGTTCCGAGAACCCCCAGCGGTGACCGTCCACT GCGCGTGTGGTTCCGAGAACCACCAGCGGTGACCGTCCACT < 41bp 0.57484589422913 0.804268699327202 0.19527039 0.47244194 prediction 0.458845610196144 Functional Gain - C14orf180 ENSG00000184601 CDS Human protein_coding chr14:105054195 chr14:105054196 synonymous SNV . 0 22 hm5C_associated_SNPs_115455 0 0 0 0 1 C14orf180 chr14:105054215 5'GT 105054215 Upstream 20bp
chr4 89607914 89607914 1 + C A rs61738481 89607913 + 89607893 89607933 41 CCAAGAGCTTTTAGATTACCCCGGGGAGGATGTGGAGGAGA CCAAGAGCTTTTAGATTACCCAGGGGAGGATGTGGAGGAGA < 41bp 0.460742777977965 0.729422380988674 0.82475173 0.9202419 prediction 0.458844761977349 Functional Gain - HERC3 ENSG00000138641 CDS Human protein_coding chr4:89607913 chr4:89607914 synonymous SNV . 0 22 hm5C_associated_SNPs_115456 0 0 1 0 2 HERC3 chr4:89607887 3'AG 89607887 Downstream 28bp
chr4 89607914 89607914 1 + C A rs61738481 89607913 + 89607893 89607933 41 CCAAGAGCTTTTAGATTACCCCGGGGAGGATGTGGAGGAGA CCAAGAGCTTTTAGATTACCCAGGGGAGGATGTGGAGGAGA < 41bp 0.460742777977965 0.729422380988674 0.82475173 0.9202419 prediction 0.458844761977349 Functional Gain - HERC3 ENSG00000138641 CDS Human protein_coding chr4:89607913 chr4:89607914 synonymous SNV . 0 22 hm5C_associated_SNPs_115456 0 0 1 0 2 HERC3 chr4:89607953 5'GT 89607953 Upstream 40bp
chr3 159713243 159713243 1 + C T UCEC 159713242 + 159713222 159713262 41 AAAAATCCTCCCTTGAAGAACCGGATTTTTATAAAACTAAA AAAAATCCTCCCTTGAAGAACTGGATTTTTATAAAACTAAA < 41bp 0.496301058575155 0.729418525258395 0.18865076 0.13306639 prediction 0.45883705051679 Functional Gain - IL12A ENSG00000168811 CDS Human protein_coding chr3:159713242 chr3:159713243 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_115462 0 0 0 0 1 IL12A chr3:159713191 3'AG 159713191 Downstream 53bp
chr19 18304774 18304774 1 + A G LUSC 18304771 + 18304751 18304791 41 GCGTCTGGCCTCCGAGGCTTCCCAAATGTCCTCAAGAAGGT GCGTCTGGCCTCCGAGGCTTCCCGAATGTCCTCAAGAAGGT < 41bp 0.533327030406082 0.762736184444346 0.033543974 0.0505732 prediction 0.458818308076529 Functional Gain - MPV17L2 ENSG00000254858 CDS Human protein_coding chr19:18304771 chr19:18304774 synonymous SNV . 0 24 hm5C_associated_SNPs_115464 0 0 1 0 1 MPV17L2 chr19:18304844 5'GT 18304844 Upstream 71bp
chr1 11254710 11254710 1 + C T KIRC 11254709 + 11254689 11254729 41 TTGGACAAGTGTGCACAGCTCCGCAAAGGTGAGATTTGGGG TTGGACAAGTGTGCACAGCTCTGCAAAGGTGAGATTTGGGG < 41bp 0.544527656259245 0.773916960521276 0.36027074 0.866 prediction 0.458778608524064 Functional Gain - ANGPTL7 ENSG00000171819 CDS Human protein_coding chr1:11254709 chr1:11254710 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_115467 0 0 0 0 1 ANGPTL7 chr1:11254716 5'GT 11254716 Upstream 7bp
chr7 76112377 76112377 1 + T G GBM 76112375 + 76112355 76112395 41 TGGGGCGCAGCTCCTCCTTCCCTGGGGAGCCAGCCCCTCTA TGGGGCGCAGCTCCTCCTTCCCGGGGGAGCCAGCCCCTCTA < 41bp 0.374840551888623 0.729385302567276 0.7964788 0.9596256 prediction 0.458770605134551 Functional Gain - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76112375 chr7:76112377 nonsynonymous SNV 0.008 0 23 hm5C_associated_SNPs_115468 0 0 0 0 1 DTX2 chr7:76112464 5'GT 76112464 Upstream 88bp
chrX 100505911 100505911 1 + C A LUAD 100505910 + 100505890 100505930 41 CTTCTTGTTTCCGTAGAGCACCGGGAAGCCAGTCATTGAAG CTTCTTGTTTCCGTAGAGCACAGGGAAGCCAGTCATTGAAG < 41bp 0.455008429954792 0.72938165336461 0.81389904 0.90893054 prediction 0.458763306729219 Functional Gain - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100505910 chrX:100505911 synonymous SNV . 0 22 hm5C_associated_SNPs_115470 0 0 0 0 1 DRP2 chrX:100505906 3'AG 100505906 Downstream 6bp
chr19 5654186 5654186 1 + A G HNSC 5654183 + 5654163 5654203 41 GATGATCAGAAACCTGGCCCCTCAGAGCGATCTCGAGCCAC GATGATCAGAAACCTGGCCCCTCGGAGCGATCTCGAGCCAC < 41bp 0.546493870212824 0.775863665011023 0.65825415 0.8313745 prediction 0.458739589596397 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5654183 chr19:5654186 synonymous SNV . 0 24 hm5C_associated_SNPs_115472 0 0 1 0 1 SAFB chr19:5654211 5'GT 5654211 Upstream 26bp
chr12 40689408 40689408 1 + C A KIRC 40689407 + 40689387 40689427 41 CTTGAAAAGCTGGAGCTTCACCAGAATGCACTCACGAGCTT CTTGAAAAGCTGGAGCTTCACAAGAATGCACTCACGAGCTT < 41bp 0.525573672290071 0.75493080476881 0.23242551 0.24849299 prediction 0.458714264957478 Functional Gain - LRRK2 ENSG00000188906 CDS Human protein_coding chr12:40689407 chr12:40689408 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_115476 0 0 0 0 1 LRRK2 chr12:40689446 5'GT 40689446 Upstream 39bp
chr11 107506466 107506466 1 + C T SKCM 107506465 + 107506445 107506485 41 AGGCCTATGATTCTGATAATCCCCAACATGAAGAAATGCTT AGGCCTATGATTCTGATAATCTCCAACATGAAGAAATGCTT < 41bp 0.44951279483104 0.729348197459127 0.10186002 0.9577811 prediction 0.458696394918255 Functional Gain - ELMOD1 ENSG00000110675 CDS Human protein_coding chr11:107506465 chr11:107506466 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_115478 0 0 0 0 1 ELMOD1 chr11:107506491 5'GT 107506491 Upstream 26bp
chr17 73702489 73702489 1 + T G LUSC 73702487 + 73702467 73702507 41 ACGATAGCCCAGCCCACCATCCTCACCACCACAGCCACCCT ACGATAGCCCAGCCCACCATCCGCACCACCACAGCCACCCT < 41bp 0.387604020258944 0.729343336084636 0.028484017 0.07878134 prediction 0.458686672169271 Functional Gain - SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73702487 chr17:73702489 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_115479 0 0 1 0 1 SAP30BP chr17:73702420 3'AG 73702420 Downstream 70bp
chr1 151015463 151015463 1 + C A LIHC 151015462 + 151015442 151015482 41 CCGGGCAGAGGGTCTGGGCACCAGTGAGACAGCTGAAAGGC CCGGGCAGAGGGTCTGGGCACAAGTGAGACAGCTGAAAGGC < 41bp 0.456989810584712 0.729335545714752 0.32292944 0.73137265 prediction 0.458671091429504 Functional Gain - BNIPL ENSG00000163141 CDS Human protein_coding chr1:151015462 chr1:151015463 synonymous SNV . 0 22 hm5C_associated_SNPs_115481 0 0 0 0 1 BNIPL chr1:151015432 3'AG 151015432 Downstream 32bp
chr9 105765478 105765478 1 + C T SKCM 105765477 + 105765457 105765497 41 AACACTTTGCCCTGTTATTTCCCAAACCACAACGGCCAGGA AACACTTTGCCCTGTTATTTCTCAAACCACAACGGCCAGGA < 41bp 0.585082628006538 0.814412213403975 0.05134037 0.14756793 prediction 0.458659170794874 Functional Gain - CYLC2 ENSG00000155833 CDS Human protein_coding chr9:105765477 chr9:105765478 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_115485 0 0 0 0 2 CYLC2 chr9:105765424 3'AG 105765424 Downstream 55bp
chr9 105765478 105765478 1 + C T SKCM 105765477 + 105765457 105765497 41 AACACTTTGCCCTGTTATTTCCCAAACCACAACGGCCAGGA AACACTTTGCCCTGTTATTTCTCAAACCACAACGGCCAGGA < 41bp 0.585082628006538 0.814412213403975 0.05134037 0.14756793 prediction 0.458659170794874 Functional Gain - CYLC2 ENSG00000155833 CDS Human protein_coding chr9:105765477 chr9:105765478 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_115485 0 0 0 0 2 CYLC2 chr9:105765545 5'GT 105765545 Upstream 68bp
chr17 41001312 41001312 1 + C T UCEC 41001311 + 41001291 41001331 41 TGGGGTCACCAGCGCGGGTACCGAATCCAGATCCACAGCCC TGGGGTCACCAGCGCGGGTACTGAATCCAGATCCACAGCCC < 41bp 0.580966407996557 0.810292597826481 0.9162337 0.9214744 prediction 0.458652379659848 Functional Gain - AOC2 ENSG00000131480 CDS Human protein_coding chr17:41001311 chr17:41001312 stopgain 0.997 1 22 hm5C_associated_SNPs_115488 0 0 0 0 1 AOC2 chr17:41001388 5'GT 41001388 Upstream 77bp
chr7 73953017 73953017 1 + C T rs55634982 73953016 + 73952996 73953036 41 TTTCCTCCTTGCAGGAACCTCCGGGGAGCTGGGCGGGCTGA TTTCCTCCTTGCAGGAACCTCTGGGGAGCTGGGCGGGCTGA < 41bp 0.550745664067145 0.780071005124277 0.903306 0.64012843 prediction 0.458650682114263 Functional Gain - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73953016 chr7:73953017 synonymous SNV . 0 22 hm5C_associated_SNPs_115489 0 0 1 0 2 GTF2IRD1 chr7:73953010 3'AG 73953010 Downstream 8bp
chr7 73953017 73953017 1 + C T rs55634982 73953016 + 73952996 73953036 41 TTTCCTCCTTGCAGGAACCTCCGGGGAGCTGGGCGGGCTGA TTTCCTCCTTGCAGGAACCTCTGGGGAGCTGGGCGGGCTGA < 41bp 0.550745664067145 0.780071005124277 0.903306 0.64012843 prediction 0.458650682114263 Functional Gain - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73953016 chr7:73953017 synonymous SNV . 0 22 hm5C_associated_SNPs_115489 0 0 1 0 2 GTF2IRD1 chr7:73953090 5'GT 73953090 Upstream 74bp
chr1 46976622 46976622 1 + C T LGG 46976621 + 46976601 46976641 41 CCCCAGGTGTGGTTCAAGAACCGCCGGGCCAAGTTCCGGAA CCCCAGGTGTGGTTCAAGAACTGCCGGGCCAAGTTCCGGAA < 41bp 0.478525172114125 0.729324142712878 0.21502778 0.13852385 prediction 0.458648285425756 Functional Gain - DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46976621 chr1:46976622 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_115491 0 0 0 0 1 DMBX1 chr1:46976607 3'AG 46976607 Downstream 16bp
chr1 32672662 32672662 1 + C T COAD 32672661 + 32672641 32672681 41 CTTCAAGAGCTTCAGTACCACCGCAGCCACTTGGCCATGGA CTTCAAGAGCTTCAGTACCACTGCAGCCACTTGGCCATGGA < 41bp 0.583894889351735 0.813207051437472 0.10039112 0.204094 prediction 0.458624324171475 Functional Gain - IQCC ENSG00000160051 CDS Human protein_coding chr1:32672661 chr1:32672662 nonsynonymous SNV 0.960 0 22 hm5C_associated_SNPs_115495 0 0 1 0 2 IQCC chr1:32672603 3'AG 32672603 Downstream 60bp
chr1 32672662 32672662 1 + C T COAD 32672661 + 32672641 32672681 41 CTTCAAGAGCTTCAGTACCACCGCAGCCACTTGGCCATGGA CTTCAAGAGCTTCAGTACCACTGCAGCCACTTGGCCATGGA < 41bp 0.583894889351735 0.813207051437472 0.10039112 0.204094 prediction 0.458624324171475 Functional Gain - IQCC ENSG00000160051 CDS Human protein_coding chr1:32672661 chr1:32672662 nonsynonymous SNV 0.960 0 22 hm5C_associated_SNPs_115495 0 0 1 0 2 IQCC chr1:32672721 5'GT 32672721 Upstream 60bp
chr4 123333900 123333900 1 + T C ESCA 123333898 + 123333878 123333918 41 AATTGACCAGATGGGAAGTGCTTGGTGTACAGGGAGCATTG AATTGACCAGATGGGAAGTGCTCGGTGTACAGGGAGCATTG < 41bp 0.442532793797399 0.729308931838889 0.4147104 0.48778993 prediction 0.458617863677778 Functional Gain - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123333898 chr4:123333900 synonymous SNV . 0 23 hm5C_associated_SNPs_115496 0 0 0 0 1 ADAD1 chr4:123333964 5'GT 123333964 Upstream 65bp
chr16 29708353 29708353 1 + C G READ 29708349 + 29708329 29708369 41 GCCAGACAGGCGGCTGACTTCACTCTGAAGGTGGAAGTGGA GCCAGACAGGCGGCTGACTTCACTGTGAAGGTGGAAGTGGA < 41bp 0.446458971159192 0.729305482630153 0.4003298 0.786129 prediction 0.458610965260305 Functional Gain - QPRT ENSG00000103485 CDS Human protein_coding chr16:29708349 chr16:29708353 nonsynonymous SNV 0.618 2 25 hm5C_associated_SNPs_115497 0 0 1 0 2 QPRT chr16:29708317 3'AG 29708317 Downstream 37bp
chr16 29708353 29708353 1 + C G READ 29708349 + 29708329 29708369 41 GCCAGACAGGCGGCTGACTTCACTCTGAAGGTGGAAGTGGA GCCAGACAGGCGGCTGACTTCACTGTGAAGGTGGAAGTGGA < 41bp 0.446458971159192 0.729305482630153 0.4003298 0.786129 prediction 0.458610965260305 Functional Gain - QPRT ENSG00000103485 CDS Human protein_coding chr16:29708349 chr16:29708353 nonsynonymous SNV 0.618 2 25 hm5C_associated_SNPs_115497 0 0 1 0 2 QPRT chr16:29708448 5'GT 29708448 Upstream 96bp
chr1 19062147 19062147 1 + C A LUSC 19062146 + 19062126 19062166 41 GTGATGAGCATCTTGGGCAACCCCAGTGCGGTGCCCCCGCA GTGATGAGCATCTTGGGCAACACCAGTGCGGTGCCCCCGCA < 41bp 0.560644466098418 0.789946894151635 0.53574836 0.5976081 prediction 0.458604856106433 Functional Gain - PAX7 ENSG00000009709 CDS Human protein_coding chr1:19062146 chr1:19062147 nonsynonymous SNV 0.930 1 22 hm5C_associated_SNPs_115499 0 0 0 0 1 PAX7 chr1:19062126 3'AG 19062126 Downstream 22bp
chr15 45879699 45879699 1 + C A UCEC 45879698 + 45879678 45879718 41 CTGACACGGCCACCCTACTGCCTGGAGGCCGGGGAGCCGAC CTGACACGGCCACCCTACTGCATGGAGGCCGGGGAGCCGAC < 41bp 0.539626145284514 0.768925527030743 0.2888657 0.81387687 prediction 0.458598763492457 Functional Gain - BLOC1S6 ENSG00000104164 CDS Human protein_coding chr15:45879698 chr15:45879699 nonsynonymous SNV 0.053 1 22 hm5C_associated_SNPs_115500 0 0 1 0 1 BLOC1S6 chr15:45879723 5'GT 45879723 Upstream 25bp
chr2 233388813 233388813 1 + T G rs2741299 233388811 + 233388791 233388831 41 ACGCGCAGGAGCTGCTCGGGCCTCGTCCGGGACTGCGGCGC ACGCGCAGGAGCTGCTCGGGCCGCGTCCGGGACTGCGGCGC < 41bp 0.379953354190949 0.72929633266239 0.41487318 0.68785954 prediction 0.458592665324781 Functional Gain - PRSS56 ENSG00000237412 CDS Human protein_coding chr2:233388811 chr2:233388813 synonymous SNV . 0 23 hm5C_associated_SNPs_115501 0 0 1 0 1 PRSS56 chr2:233388749 3'AG 233388749 Downstream 65bp
chr5 147653926 147653926 1 + T C UCEC 147653924 + 147653904 147653944 41 TAGCAGGAATTTTCAATAAACGTGACTTCACTAGGTGGCCT TAGCAGGAATTTTCAATAAACGCGACTTCACTAGGTGGCCT < 41bp 0.56307193467846 0.792344987410259 0.2150755 0.0993489 prediction 0.458546105463598 Functional Gain - SPINK13 ENSG00000214510 CDS Human antisense chr5:147653924 chr5:147653926 synonymous SNV . 0 23 hm5C_associated_SNPs_115506 0 0 1 2 3 LOC102546294 chr5:147653907 3'AG 147653907 Downstream 20bp
chr5 147653926 147653926 1 + T C UCEC 147653924 + 147653904 147653944 41 TAGCAGGAATTTTCAATAAACGTGACTTCACTAGGTGGCCT TAGCAGGAATTTTCAATAAACGCGACTTCACTAGGTGGCCT < 41bp 0.56307193467846 0.792344987410259 0.2150755 0.0993489 prediction 0.458546105463598 Functional Gain - SPINK13 ENSG00000214510 CDS Human protein_coding chr5:147653924 chr5:147653926 synonymous SNV . 0 23 hm5C_associated_SNPs_115506 0 0 1 2 3 SPINK13 chr5:147653910 3'AG 147653910 Downstream 17bp
chr5 147653926 147653926 1 + T C UCEC 147653924 + 147653904 147653944 41 TAGCAGGAATTTTCAATAAACGTGACTTCACTAGGTGGCCT TAGCAGGAATTTTCAATAAACGCGACTTCACTAGGTGGCCT < 41bp 0.56307193467846 0.792344987410259 0.2150755 0.0993489 prediction 0.458546105463598 Functional Gain - SPINK13 ENSG00000214510 CDS Human protein_coding chr5:147653924 chr5:147653926 synonymous SNV . 0 23 hm5C_associated_SNPs_115506 0 0 1 2 3 SPINK13 chr5:147653947 5'GT 147653947 Upstream 22bp
chr19 39787231 39787231 1 + T C LUSC 39787229 + 39787209 39787249 41 TTCAAGAAGGCCAGGGACGCCTTGGTGAGTTCCTGTTGCTG TTCAAGAAGGCCAGGGACGCCTCGGTGAGTTCCTGTTGCTG < 41bp 0.537745717755883 0.767007470010347 0.18926257 0.15076822 prediction 0.458523504508927 Functional Gain - IFNL1 ENSG00000182393 CDS Human protein_coding chr19:39787229 chr19:39787231 nonsynonymous SNV 0.943 3 23 hm5C_associated_SNPs_115509 0 0 0 0 1 IFNL1 chr19:39787232 5'GT 39787232 Upstream 2bp
chr1 210006589 210006589 1 + T C COAD 210006587 + 210006567 210006607 41 TGGGGAAGAGCCACCGGGCACATCACAAACATCCCCCGAAG TGGGGAAGAGCCACCGGGCACACCACAAACATCCCCCGAAG < 41bp 0.544063435215074 0.773318907267014 0.12372592 0.06906545 prediction 0.458510944103879 Functional Gain - DIEXF ENSG00000117597 CDS Human protein_coding chr1:210006587 chr1:210006589 nonsynonymous SNV 0.043 0 23 hm5C_associated_SNPs_115512 0 0 1 0 1 DIEXF chr1:210006530 3'AG 210006530 Downstream 60bp
chr5 176305058 176305058 1 + C T COAD 176305057 + 176305037 176305077 41 TCAAGCTGCTTCTGTTTGCGCCGGTGGCCTGCACCTCCCTC TCAAGCTGCTTCTGTTTGCGCTGGTGGCCTGCACCTCCCTC < 41bp 0.519458206533298 0.748713610053125 0.71873325 0.2689758 prediction 0.458510807039654 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176305057 chr5:176305058 nonsynonymous SNV 0.637 2 22 hm5C_associated_SNPs_115513 0 0 0 0 1 UNC5A chr5:176305128 5'GT 176305128 Upstream 71bp
chr15 41862463 41862463 1 + C A COAD 41862462 + 41862442 41862482 41 GCCTTTGACAGTGTCATGGCCCGGGGAGAGCCAGCCGTTCA GCCTTTGACAGTGTCATGGCCAGGGGAGAGCCAGCCGTTCA < 41bp 0.596566274071492 0.825815283347614 0.8987555 0.9224695 prediction 0.458498018552242 Functional Gain - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41862462 chr15:41862463 synonymous SNV . 0 22 hm5C_associated_SNPs_115514 0 0 1 0 2 TYRO3 chr15:41862438 3'AG 41862438 Downstream 26bp
chr15 41862463 41862463 1 + C A COAD 41862462 + 41862442 41862482 41 GCCTTTGACAGTGTCATGGCCCGGGGAGAGCCAGCCGTTCA GCCTTTGACAGTGTCATGGCCAGGGGAGAGCCAGCCGTTCA < 41bp 0.596566274071492 0.825815283347614 0.8987555 0.9224695 prediction 0.458498018552242 Functional Gain - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41862462 chr15:41862463 synonymous SNV . 0 22 hm5C_associated_SNPs_115514 0 0 1 0 2 TYRO3 chr15:41862538 5'GT 41862538 Upstream 76bp
chr6 52541908 52541908 1 + T C HNSC 52541906 + 52541886 52541926 41 ATTGCAACCTTGCCAATGGACCTGATCGGTTTTGGTTATGC ATTGCAACCTTGCCAATGGACCCGATCGGTTTTGGTTATGC < 41bp 0.438778522131708 0.729248173212153 0.031048477 0.012445837 prediction 0.458496346424307 Functional Gain - TMEM14A ENSG00000096092 CDS Human protein_coding chr6:52541906 chr6:52541908 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_115516 0 0 1 0 2 TMEM14A chr6:52541885 3'AG 52541885 Downstream 24bp
chr6 52541908 52541908 1 + T C HNSC 52541906 + 52541886 52541926 41 ATTGCAACCTTGCCAATGGACCTGATCGGTTTTGGTTATGC ATTGCAACCTTGCCAATGGACCCGATCGGTTTTGGTTATGC < 41bp 0.438778522131708 0.729248173212153 0.031048477 0.012445837 prediction 0.458496346424307 Functional Gain - TMEM14A ENSG00000096092 CDS Human protein_coding chr6:52541906 chr6:52541908 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_115516 0 0 1 0 2 TMEM14A chr6:52541970 5'GT 52541970 Upstream 63bp
chr9 34972400 34972400 1 + C T SKCM 34972399 + 34972379 34972419 41 TGGACAGCTGAGAGCCTCTTCCCGTGCAGGGTCTGCACCAG TGGACAGCTGAGAGCCTCTTCTCGTGCAGGGTCTGCACCAG < 41bp 0.46834855530089 0.729244333614268 0.08209485 0.17079103 prediction 0.458488667228536 Functional Gain - PHF24 ENSG00000122733 CDS Human protein_coding chr9:34972399 chr9:34972400 nonsynonymous SNV 0.876 2 22 hm5C_associated_SNPs_115517 0 0 0 0 1 PHF24 chr9:34972343 3'AG 34972343 Downstream 58bp
chrX 130215862 130215862 1 + C G rs200726448 130215858 + 130215838 130215878 41 GCTTACCACGAACTCGTGGCCAGACATTTCCTCTCCGAATT GCTTACCACGAACTCGTGGCCAGAGATTTCCTCTCCGAATT < 41bp 0.430339682275835 0.729243522655628 0.28672898 0.84176326 prediction 0.458487045311256 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130215858 chrX:130215862 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_115518 0 0 0 0 1 ARHGAP36 chrX:130215892 5'GT 130215892 Upstream 31bp
chr1 155294665 155294665 1 + C T BLCA 155294664 + 155294644 155294684 41 TCGTGGTCCTTCGCCGGTGTCCCCGGAGCCCAGCGGCTGTG TCGTGGTCCTTCGCCGGTGTCTCCGGAGCCCAGCGGCTGTG < 41bp 0.485786971486244 0.729230345398971 0.2559334 0.5888558 prediction 0.458460690797943 Functional Gain - RUSC1 ENSG00000160753 CDS Human protein_coding chr1:155294664 chr1:155294665 nonsynonymous SNV 0.960 0 22 hm5C_associated_SNPs_115523 0 0 1 0 2 RUSC1 chr1:155294636 3'AG 155294636 Downstream 30bp
chr1 155294665 155294665 1 + C T BLCA 155294664 + 155294644 155294684 41 TCGTGGTCCTTCGCCGGTGTCCCCGGAGCCCAGCGGCTGTG TCGTGGTCCTTCGCCGGTGTCTCCGGAGCCCAGCGGCTGTG < 41bp 0.485786971486244 0.729230345398971 0.2559334 0.5888558 prediction 0.458460690797943 Functional Gain - RUSC1 ENSG00000160753 CDS Human protein_coding chr1:155294664 chr1:155294665 nonsynonymous SNV 0.960 0 22 hm5C_associated_SNPs_115523 0 0 1 0 2 RUSC1 chr1:155294734 5'GT 155294734 Upstream 70bp
chrX 136649852 136649852 1 + C A ESCA 136649848 + 136649828 136649868 41 GCCCTTCCCATGCCCCTTCCCGGGCTGCGGGAAGATCTTTG GCCCTTCCCATGCCCCTTCCCGGGATGCGGGAAGATCTTTG < 41bp 0.699845436928532 0.929072607599549 0.89676774 0.91053474 prediction 0.458454341342034 Functional Gain - ZIC3 ENSG00000156925 CDS Human protein_coding chrX:136649848 chrX:136649852 synonymous SNV . 0 25 hm5C_associated_SNPs_115524 0 0 1 0 1 ZIC3 chrX:136649910 5'GT 136649910 Upstream 59bp
chr1 159799751 159799751 1 + C T SKCM 159799750 + 159799730 159799770 41 CGTCCCCCTGGCTTCCAAGTCCGTGAGGCTATCTGGCGATC CGTCCCCCTGGCTTCCAAGTCTGTGAGGCTATCTGGCGATC < 41bp 0.481812188357446 0.729220842884045 0.37170085 0.33945572 prediction 0.458441685768091 Functional Gain - SLAMF8 ENSG00000158714 CDS Human protein_coding chr1:159799750 chr1:159799751 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_115528 0 0 0 0 1 SLAMF8 chr1:159799656 3'AG 159799656 Downstream 96bp
chr11 128782012 128782012 1 + C A rs7102584 128782011 + 128781991 128782031 41 ATCATCTCCCATGAGATCAACCAGAAGAGCCCTTTCTGGGA ATCATCTCCCATGAGATCAACAAGAAGAGCCCTTTCTGGGA < 41bp 0.581015876568646 0.810232636932582 0.11731291 0.1671674 prediction 0.458433520727871 Functional Gain - KCNJ5 ENSG00000120457 CDS Human protein_coding chr11:128782011 chr11:128782012 nonsynonymous SNV 0.990 2 22 hm5C_associated_SNPs_115529 0 0 0 0 1 KCNJ5 chr11:128782105 5'GT 128782105 Upstream 94bp
chr19 48832635 48832635 1 + A G COAD 48832632 + 48832612 48832652 41 GGCTGAAGGCGGTGCAGGTCCTCATGGTGCTCTCCCTCATT GGCTGAAGGCGGTGCAGGTCCTCGTGGTGCTCTCCCTCATT < 41bp 0.56150961966925 0.790726302242678 0.19809979 0.27492923 prediction 0.458433365146857 Functional Gain - EMP3 ENSG00000142227 CDS Human protein_coding chr19:48832632 chr19:48832635 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_115530 0 0 1 0 1 EMP3 chr19:48832609 3'AG 48832609 Downstream 27bp
chr14 59792754 59792754 1 + C T UCS 59792753 + 59792733 59792773 41 TGACACATAGTGAAGCTTACCCGCATTTCATGTCCATCCTG TGACACATAGTGAAGCTTACCTGCATTTCATGTCCATCCTG < 41bp 0.578121634320798 0.807332271397065 0.059224337 0.085394025 prediction 0.458421274152535 Functional Gain - DAAM1 ENSG00000100592 CDS Human protein_coding chr14:59792753 chr14:59792754 nonsynonymous SNV 0.965 4 22 hm5C_associated_SNPs_115531 0 0 0 0 2 DAAM1 chr14:59792678 3'AG 59792678 Downstream 77bp
chr14 59792754 59792754 1 + C T UCS 59792753 + 59792733 59792773 41 TGACACATAGTGAAGCTTACCCGCATTTCATGTCCATCCTG TGACACATAGTGAAGCTTACCTGCATTTCATGTCCATCCTG < 41bp 0.578121634320798 0.807332271397065 0.059224337 0.085394025 prediction 0.458421274152535 Functional Gain - DAAM1 ENSG00000100592 CDS Human protein_coding chr14:59792753 chr14:59792754 nonsynonymous SNV 0.965 4 22 hm5C_associated_SNPs_115531 0 0 0 0 2 DAAM1 chr14:59792795 5'GT 59792795 Upstream 42bp
chr19 6833629 6833629 1 + T C rs34307869 6833627 + 6833607 6833647 41 GGGTCCCTCCATGTGGCCGACATGGGCAAGGTACGAGTGGG GGGTCCCTCCATGTGGCCGACACGGGCAAGGTACGAGTGGG < 41bp 0.478684146927148 0.729207904544221 0.91218215 0.8977554 prediction 0.458415809088443 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6833627 chr19:6833629 synonymous SNV . 0 23 hm5C_associated_SNPs_115534 0 0 0 0 2 VAV1 chr19:6833539 3'AG 6833539 Downstream 91bp
chr19 6833629 6833629 1 + T C rs34307869 6833627 + 6833607 6833647 41 GGGTCCCTCCATGTGGCCGACATGGGCAAGGTACGAGTGGG GGGTCCCTCCATGTGGCCGACACGGGCAAGGTACGAGTGGG < 41bp 0.478684146927148 0.729207904544221 0.91218215 0.8977554 prediction 0.458415809088443 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6833627 chr19:6833629 synonymous SNV . 0 23 hm5C_associated_SNPs_115534 0 0 0 0 2 VAV1 chr19:6833636 5'GT 6833636 Upstream 8bp
chr15 63353074 63353074 1 + C G BRCA 63353073 + 63353053 63353093 41 GTCTTCCTGCTGCAGGTGGCCCGTAAGCTGGTCATCATTGA GTCTTCCTGCTGCAGGTGGCCGGTAAGCTGGTCATCATTGA < 41bp 0.423309000339633 0.729204119793989 0.15236554 0.45748773 prediction 0.458408239587979 Functional Gain - TPM1 ENSG00000140416 CDS Human protein_coding chr15:63353073 chr15:63353074 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_115535 0 0 1 0 1 TPM1 chr15:63353068 3'AG 63353068 Downstream 7bp
chr11 123485488 123485488 1 + C T LAML 123485487 + 123485467 123485507 41 CGGCATATCCCGGAGGACACCCCCAACGGTTTCCACCTGCA CGGCATATCCCGGAGGACACCTCCAACGGTTTCCACCTGCA < 41bp 0.441343651438192 0.729203773918446 0.096532375 0.9675636 prediction 0.458407547836892 Functional Gain - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123485487 chr11:123485488 nonsynonymous SNV 0.244 0 22 hm5C_associated_SNPs_115536 0 0 0 0 2 GRAMD1B chr11:123485453 3'AG 123485453 Downstream 36bp
chr11 123485488 123485488 1 + C T LAML 123485487 + 123485467 123485507 41 CGGCATATCCCGGAGGACACCCCCAACGGTTTCCACCTGCA CGGCATATCCCGGAGGACACCTCCAACGGTTTCCACCTGCA < 41bp 0.441343651438192 0.729203773918446 0.096532375 0.9675636 prediction 0.458407547836892 Functional Gain - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123485487 chr11:123485488 nonsynonymous SNV 0.244 0 22 hm5C_associated_SNPs_115536 0 0 0 0 2 GRAMD1B chr11:123485543 5'GT 123485543 Upstream 56bp
chr19 17305440 17305440 1 + T A rs1064305 17305436 + 17305416 17305456 41 AGCCCTGGAAGCCGCAAGAGCAGGTGCTGAGGAGGGCGGAC AGCCCTGGAAGCCGCAAGAGCAGGAGCTGAGGAGGGCGGAC < 41bp 0.428036749323417 0.729202719337334 0.91036415 0.90582836 prediction 0.458405438674667 Functional Gain - MYO9B ENSG00000099331 CDS Human protein_coding chr19:17305436 chr19:17305440 synonymous SNV . 0 25 hm5C_associated_SNPs_115537 0 0 1 0 1 MYO9B chr19:17305365 3'AG 17305365 Downstream 76bp
chr8 126015654 126015654 1 + A G COAD 126015651 + 126015631 126015671 41 CCGGGTGGTTATCATGTTCTCAAAGACCTTGGTCTTGGAGG CCGGGTGGTTATCATGTTCTCAAGGACCTTGGTCTTGGAGG < 41bp 0.541177114153028 0.770368740823037 0.32173967 0.7809665 prediction 0.458383253340019 Functional Gain - SQLE ENSG00000104549 CDS Human protein_coding chr8:126015651 chr8:126015654 synonymous SNV . 0 24 hm5C_associated_SNPs_115540 0 0 1 0 1 SQLE chr8:126015670 5'GT 126015670 Upstream 17bp
chr7 143018928 143018928 1 + C T SKCM 143018927 + 143018907 143018947 41 CGGGCCTGGGCAGTGGCATCCCCGTGGGGAAAGAGGTAGGC CGGGCCTGGGCAGTGGCATCCTCGTGGGGAAAGAGGTAGGC < 41bp 0.469307608491136 0.729178849453891 0.36767682 0.31525153 prediction 0.458357698907783 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143018927 chr7:143018928 nonsynonymous SNV 0.967 5 22 hm5C_associated_SNPs_115547 0 0 0 0 1 CLCN1 chr7:143018941 5'GT 143018941 Upstream 14bp
chr22 38470346 38470346 1 + C T PAAD 38470345 + 38470325 38470365 41 GCCCCTTTACCGGGTGAGCACCGGCAACTATGAGTACCGCC GCCCCTTTACCGGGTGAGCACTGGCAACTATGAGTACCGCC < 41bp 0.511194022206966 0.740370147251255 0.81514215 0.3172943 prediction 0.458352250088578 Functional Gain - PICK1 ENSG00000100151 CDS Human protein_coding chr22:38470345 chr22:38470346 synonymous SNV . 0 22 hm5C_associated_SNPs_115548 0 0 1 0 1 PICK1 chr22:38470314 3'AG 38470314 Downstream 33bp
chr16 2511175 2511175 1 + C T SKCM 2511174 + 2511154 2511194 41 CCTCAGGGACCAGCAAATGGCCCCATCCGCTGCTCCTCAGG CCTCAGGGACCAGCAAATGGCTCCATCCGCTGCTCCTCAGG < 41bp 0.510916148836919 0.740087494940233 0.14694655 0.9453248 prediction 0.458342692206627 Functional Gain - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2511174 chr16:2511175 synonymous SNV . 0 22 hm5C_associated_SNPs_115550 0 0 1 0 1 C16orf59 chr16:2511225 5'GT 2511225 Upstream 51bp
chr1 40228239 40228239 1 + A G UCEC 40228236 + 40228216 40228256 41 GCCAGGGGATCCAGAAAAAACAAAGATGGCCAAGAGAGAAA GCCAGGGGATCCAGAAAAAACAAGGATGGCCAAGAGAGAAA < 41bp 0.506034938936399 0.735202642661153 0.89654464 0.90322936 prediction 0.458335407449508 Functional Gain - PPIE ENSG00000084072 CDS Human protein_coding chr1:40228236 chr1:40228239 synonymous SNV . 0 24 hm5C_associated_SNPs_115551 0 0 0 0 2 PPIE chr1:40228189 3'AG 40228189 Downstream 51bp
chr1 40228239 40228239 1 + A G UCEC 40228236 + 40228216 40228256 41 GCCAGGGGATCCAGAAAAAACAAAGATGGCCAAGAGAGAAA GCCAGGGGATCCAGAAAAAACAAGGATGGCCAAGAGAGAAA < 41bp 0.506034938936399 0.735202642661153 0.89654464 0.90322936 prediction 0.458335407449508 Functional Gain - PPIE ENSG00000084072 CDS Human protein_coding chr1:40228236 chr1:40228239 synonymous SNV . 0 24 hm5C_associated_SNPs_115551 0 0 0 0 2 PPIE chr1:40228323 5'GT 40228323 Upstream 85bp
chr7 112124979 112124979 1 + C G BRCA 112124978 + 112124958 112124998 41 CAAACTAAACCTCTGTCCAGCCGGATCGCAGCATCTGTTCC CAAACTAAACCTCTGTCCAGCGGGATCGCAGCATCTGTTCC < 41bp 0.641021320955943 0.870188787159539 0.16655335 0.8486306 prediction 0.458334932407192 Functional Gain - LSMEM1 ENSG00000181016 CDS Human protein_coding chr7:112124978 chr7:112124979 synonymous SNV . 0 22 hm5C_associated_SNPs_115552 0 0 1 0 1 LSMEM1 chr7:112124998 5'GT 112124998 Upstream 20bp
chr12 98995169 98995169 1 + C T HNSC 98995168 + 98995148 98995188 41 GTATGGAAGGGACTGTTTGCCCGTATCATCATGATTGGTAC GTATGGAAGGGACTGTTTGCCTGTATCATCATGATTGGTAC < 41bp 0.533883190542659 0.763049878960004 0.020942032 0.052545935 prediction 0.45833337683469 Functional Gain - SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98995168 chr12:98995169 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_115553 0 0 1 0 1 SLC25A3 chr12:98995146 3'AG 98995146 Downstream 24bp
chr7 133943141 133943141 1 + C T GBM 133943140 + 133943120 133943160 41 AGGAGCCAGTGACAGTGAGACCGAAGAGACCCGGAAAGGTA AGGAGCCAGTGACAGTGAGACTGAAGAGACCCGGAAAGGTA < 41bp 0.538919424927395 0.768085996534323 0.03295654 0.047092706 prediction 0.458333143213855 Functional Gain - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133943140 chr7:133943141 synonymous SNV . 0 22 hm5C_associated_SNPs_115554 0 0 0 0 1 LRGUK chr7:133943157 5'GT 133943157 Upstream 17bp
chr6 142468512 142468512 1 + C A LIHC 142468508 + 142468488 142468528 41 AGGACGGCTCAGGAGCATGACAAGCGAGACCCTGTGGTGGC AGGACGGCTCAGGAGCATGACAAGAGAGACCCTGTGGTGGC < 41bp 0.693340269811766 0.922503361596145 0.060538262 0.19911993 prediction 0.458326183568758 Functional Gain - VTA1 ENSG00000009844 CDS Human protein_coding chr6:142468508 chr6:142468512 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_115557 0 0 1 0 1 VTA1 chr6:142468536 5'GT 142468536 Upstream 25bp
chr10 71662551 71662551 1 + C G UCEC 71662547 + 71662527 71662567 41 CCAAGGTCCACCAGGGCCCCCAGGCCCCCCTGGACCAAGTG CCAAGGTCCACCAGGGCCCCCAGGGCCCCCTGGACCAAGTG < 41bp 0.443873941081603 0.729156072336589 0.5796986 0.8842305 prediction 0.458312144673179 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71662547 chr10:71662551 synonymous SNV . 0 25 hm5C_associated_SNPs_115559 0 0 0 0 2 COL13A1 chr10:71662504 3'AG 71662504 Downstream 48bp
chr10 71662551 71662551 1 + C G UCEC 71662547 + 71662527 71662567 41 CCAAGGTCCACCAGGGCCCCCAGGCCCCCCTGGACCAAGTG CCAAGGTCCACCAGGGCCCCCAGGGCCCCCTGGACCAAGTG < 41bp 0.443873941081603 0.729156072336589 0.5796986 0.8842305 prediction 0.458312144673179 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71662547 chr10:71662551 synonymous SNV . 0 25 hm5C_associated_SNPs_115559 0 0 0 0 2 COL13A1 chr10:71662611 5'GT 71662611 Upstream 61bp
chr5 916059 916059 1 + C T SKCM 916058 + 916038 916078 41 GGCCGGGTCCTGAGAAAACTCCCCTTTCTGGCTCATGCGCT GGCCGGGTCCTGAGAAAACTCTCCTTTCTGGCTCATGCGCT < 41bp 0.462368456309977 0.729154148371432 0.3349822 0.3675226 prediction 0.458308296742864 Functional Gain - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:916058 chr5:916059 nonsynonymous SNV 0.720 5 22 hm5C_associated_SNPs_115562 0 0 1 0 2 TRIP13 chr5:916019 3'AG 916019 Downstream 41bp
chr5 916059 916059 1 + C T SKCM 916058 + 916038 916078 41 GGCCGGGTCCTGAGAAAACTCCCCTTTCTGGCTCATGCGCT GGCCGGGTCCTGAGAAAACTCTCCTTTCTGGCTCATGCGCT < 41bp 0.462368456309977 0.729154148371432 0.3349822 0.3675226 prediction 0.458308296742864 Functional Gain - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:916058 chr5:916059 nonsynonymous SNV 0.720 5 22 hm5C_associated_SNPs_115562 0 0 1 0 2 TRIP13 chr5:916088 5'GT 916088 Upstream 30bp
chr19 10570295 10570295 1 + C T HNSC 10570294 + 10570274 10570314 41 CGGGACCTGCTGAAGAAATTCCGCATCCCTGTGGACACGAT CGGGACCTGCTGAAGAAATTCTGCATCCCTGTGGACACGAT < 41bp 0.453634756266276 0.729153120107242 0.38626665 0.45293272 prediction 0.458306240214483 Functional Gain - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10570294 chr19:10570295 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_115564 0 0 1 0 1 PDE4A chr19:10570271 3'AG 10570271 Downstream 25bp
chr17 61611655 61611655 1 + C A LUSC 61611654 + 61611634 61611674 41 CCTTTCGACCTCCTGATCTTCCGCACTGGCTCCGATGAGGT CCTTTCGACCTCCTGATCTTCAGCACTGGCTCCGATGAGGT < 41bp 0.466604912915873 0.729151122164882 0.07728979 0.1194188 prediction 0.458302244329764 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61611654 chr17:61611655 nonsynonymous SNV 0.981 2 22 hm5C_associated_SNPs_115565 0 0 0 0 1 KCNH6 chr17:61611672 5'GT 61611672 Upstream 18bp
chr9 6486894 6486894 1 + T G COAD 6486891 + 6486871 6486911 41 AAGTAATGATGGGGCTTATTCTCTTGTACTGGCTGGTGGAT AAGTAATGATGGGGCTTATTCTCGTGTACTGGCTGGTGGAT < 41bp 0.347599032695545 0.72914726991778 0.20229882 0.5561088 prediction 0.45829453983556 Functional Gain - UHRF2 ENSG00000147854 CDS Human protein_coding chr9:6486891 chr9:6486894 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_115567 0 0 1 0 1 UHRF2 chr9:6486925 5'GT 6486925 Upstream 32bp
chr10 65359025 65359025 1 + T A ESCA 65359021 + 65359001 65359041 41 TTTAAACCTTGCAGCTACTGCTGCTGTTACTGCAGCAGTAA TTTAAACCTTGCAGCTACTGCTGCAGTTACTGCAGCAGTAA < 41bp 0.380848998369724 0.729141286228291 0.22910771 0.15803713 prediction 0.458282572456581 Functional Gain - REEP3 ENSG00000165476 CDS Human protein_coding chr10:65359021 chr10:65359025 synonymous SNV . 0 25 hm5C_associated_SNPs_115570 0 0 1 0 2 REEP3 chr10:65358930 3'AG 65358930 Downstream 96bp
chr10 65359025 65359025 1 + T A ESCA 65359021 + 65359001 65359041 41 TTTAAACCTTGCAGCTACTGCTGCTGTTACTGCAGCAGTAA TTTAAACCTTGCAGCTACTGCTGCAGTTACTGCAGCAGTAA < 41bp 0.380848998369724 0.729141286228291 0.22910771 0.15803713 prediction 0.458282572456581 Functional Gain - REEP3 ENSG00000165476 CDS Human protein_coding chr10:65359021 chr10:65359025 synonymous SNV . 0 25 hm5C_associated_SNPs_115570 0 0 1 0 2 REEP3 chr10:65359043 5'GT 65359043 Upstream 19bp
chr14 104431746 104431746 1 + C T COAD 104431745 + 104431725 104431765 41 GCGGTAAAAGCACTCAGCTCCCGCAGTATATCTTGGACCAC GCGGTAAAAGCACTCAGCTCCTGCAGTATATCTTGGACCAC < 41bp 0.56763963164541 0.79677785811431 0.22723463 0.26858976 prediction 0.458276452937799 Functional Gain - TDRD9 ENSG00000156414 CDS Human protein_coding chr14:104431745 chr14:104431746 nonsynonymous SNV 0.232 3 22 hm5C_associated_SNPs_115573 0 0 0 0 1 TDRD9 chr14:104431670 3'AG 104431670 Downstream 77bp
chr10 51751483 51751483 1 + C T SKCM 51751482 + 51751462 51751502 41 CCAGAGGCAAGCACAATATTCCAGAGGAACTCTCAAACAGA CCAGAGGCAAGCACAATATTCTAGAGGAACTCTCAAACAGA < 41bp 0.576749243899033 0.805877999825296 0.8050758 0.28917348 prediction 0.458257511852525 Functional Gain - AGAP6 ENSG00000204149 CDS Human protein_coding chr10:51751482 chr10:51751483 stopgain 0.018 1 22 hm5C_associated_SNPs_115575 0 0 1 0 2 AGAP6 chr10:51751436 3'AG 51751436 Downstream 48bp
chr10 51751483 51751483 1 + C T SKCM 51751482 + 51751462 51751502 41 CCAGAGGCAAGCACAATATTCCAGAGGAACTCTCAAACAGA CCAGAGGCAAGCACAATATTCTAGAGGAACTCTCAAACAGA < 41bp 0.576749243899033 0.805877999825296 0.8050758 0.28917348 prediction 0.458257511852525 Functional Gain - AGAP6 ENSG00000204149 CDS Human protein_coding chr10:51751482 chr10:51751483 stopgain 0.018 1 22 hm5C_associated_SNPs_115575 0 0 1 0 2 AGAP6 chr10:51751504 5'GT 51751504 Upstream 22bp
chr7 129948173 129948173 1 + C A rs149127901 129948172 + 129948152 129948192 41 ATTATGGAGGAAGACGCGGTCCCGAAATCCTGGAAGCTCCT ATTATGGAGGAAGACGCGGTCACGAAATCCTGGAAGCTCCT < 41bp 0.591919537795995 0.821047329953966 0.31180412 0.3256574 prediction 0.458255584315943 Functional Gain - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129948172 chr7:129948173 synonymous SNV . 0 22 hm5C_associated_SNPs_115577 0 0 0 0 2 CPA4 chr7:129948147 3'AG 129948147 Downstream 27bp
chr7 129948173 129948173 1 + C A rs149127901 129948172 + 129948152 129948192 41 ATTATGGAGGAAGACGCGGTCCCGAAATCCTGGAAGCTCCT ATTATGGAGGAAGACGCGGTCACGAAATCCTGGAAGCTCCT < 41bp 0.591919537795995 0.821047329953966 0.31180412 0.3256574 prediction 0.458255584315943 Functional Gain - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129948172 chr7:129948173 synonymous SNV . 0 22 hm5C_associated_SNPs_115577 0 0 0 0 2 CPA4 chr7:129948237 5'GT 129948237 Upstream 65bp
chr11 14276232 14276232 1 + T C PRAD 14276230 + 14276210 14276250 41 GTCCAGAAGGTGGTGCAAGACCTGATTCCCTGGGACGCTGG GTCCAGAAGGTGGTGCAAGACCCGATTCCCTGGGACGCTGG < 41bp 0.619919298781669 0.849046315560894 0.42907292 0.23332906 prediction 0.458254033558451 Functional Gain - SPON1 ENSG00000152268 ncRNA_exonic Human other chr11:14276230 chr11:14276232 . 1.000 3 23 hm5C_associated_SNPs_115578 0 0 0 0 1 SPON1 chr11:14276275 5'GT 14276275 Upstream 44bp
chr19 10818183 10818183 1 + C T KIRC 10818182 + 10818162 10818202 41 GGGCCCTGTTGCAGGTCAATCCGCTGGCTGGACCGGTGCAT GGGCCCTGTTGCAGGTCAATCTGCTGGCTGGACCGGTGCAT < 41bp 0.53956654523703 0.768691778577486 0.72543186 0.37213135 prediction 0.458250466680913 Functional Gain - QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10818182 chr19:10818183 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_115579 0 0 1 0 1 QTRT1 chr19:10818176 3'AG 10818176 Downstream 8bp
chr3 38454487 38454487 1 + C A UCEC 38454486 + 38454466 38454506 41 CAGAGAATCTTGTCTCAGACCCGGGGGCCTCCGGAGTGAAC CAGAGAATCTTGTCTCAGACCAGGGGGCCTCCGGAGTGAAC < 41bp 0.574460448764281 0.803582875978429 0.9059862 0.8949355 prediction 0.458244854428296 Functional Gain - XYLB ENSG00000093217 CDS Human protein_coding chr3:38454486 chr3:38454487 synonymous SNV . 0 22 hm5C_associated_SNPs_115580 0 0 1 0 1 XYLB chr3:38454427 3'AG 38454427 Downstream 61bp
chr2 96072701 96072701 1 + C T SKCM 96072700 + 96072680 96072720 41 TCTCTACAGAGCCCTGGCTGCCCAGTTGCCAGTCCTACCAC TCTCTACAGAGCCCTGGCTGCTCAGTTGCCAGTCCTACCAC < 41bp 0.56251653986429 0.791638428774901 0.611629 0.81787884 prediction 0.458243777821223 Functional Gain - FAHD2A ENSG00000115042 CDS Human protein_coding chr2:96072700 chr2:96072701 synonymous SNV . 0 22 hm5C_associated_SNPs_115581 0 0 1 0 1 FAHD2A chr2:96072689 3'AG 96072689 Downstream 13bp
chr1 160105689 160105689 1 + C A LUSC 160105688 + 160105668 160105708 41 ACACCCTGACCAGCAACATCCCCGAGATCACCCCCTTCCTG ACACCCTGACCAGCAACATCCACGAGATCACCCCCTTCCTG < 41bp 0.591703009785542 0.820819322685528 0.17127103 0.52455646 prediction 0.458232625799972 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160105688 chr1:160105689 nonsynonymous SNV 0.939 5 22 hm5C_associated_SNPs_115583 0 0 0 0 2 ATP1A2 chr1:160105629 3'AG 160105629 Downstream 61bp
chr1 160105689 160105689 1 + C A LUSC 160105688 + 160105668 160105708 41 ACACCCTGACCAGCAACATCCCCGAGATCACCCCCTTCCTG ACACCCTGACCAGCAACATCCACGAGATCACCCCCTTCCTG < 41bp 0.591703009785542 0.820819322685528 0.17127103 0.52455646 prediction 0.458232625799972 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160105688 chr1:160105689 nonsynonymous SNV 0.939 5 22 hm5C_associated_SNPs_115583 0 0 0 0 2 ATP1A2 chr1:160105783 5'GT 160105783 Upstream 95bp
chr2 27015103 27015103 1 + C T LUAD 27015102 + 27015082 27015122 41 ATAAGGAAGCTGCCCTTCAGCCGCCTGGTAAGCTCCGGGAG ATAAGGAAGCTGCCCTTCAGCTGCCTGGTAAGCTCCGGGAG < 41bp 0.555496211019607 0.784605975137106 0.14621568 0.1688276 prediction 0.458219528234998 Functional Gain - CENPA ENSG00000115163 CDS Human protein_coding chr2:27015102 chr2:27015103 nonsynonymous SNV 0.213 4 22 hm5C_associated_SNPs_115586 0 0 1 0 1 CENPA chr2:27015108 5'GT 27015108 Upstream 6bp
chr22 50648639 50648639 1 + C T STAD 50648638 + 50648618 50648658 41 GCGCACGGCGCGGATGGTGGCCGAGTGGCAGTGTGTGGGCT GCGCACGGCGCGGATGGTGGCTGAGTGGCAGTGTGTGGGCT < 41bp 0.519908278121148 0.749015886963982 0.24079412 0.17980522 prediction 0.458215217685669 Functional Gain - SELENOO ENSG00000073169 CDS Human protein_coding chr22:50648638 chr22:50648639 unknown . 0 22 hm5C_associated_SNPs_115588 0 0 1 0 1 SELENOO chr22:50648610 3'AG 50648610 Downstream 30bp
chr20 35509146 35509146 1 + A G LIHC 35509143 + 35509123 35509163 41 ATTCCTCTTCTCCTTCTCCCCACAGCTGAAGGTGATGTTCC ATTCCTCTTCTCCTTCTCCCCACGGCTGAAGGTGATGTTCC < 41bp 0.540647579013344 0.76974758913894 0.14583424 0.15113643 prediction 0.458200020251191 Functional Gain - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35509143 chr20:35509146 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_115590 0 0 0 0 2 TLDC2 chr20:35509058 3'AG 35509058 Downstream 89bp
chr20 35509146 35509146 1 + A G LIHC 35509143 + 35509123 35509163 41 ATTCCTCTTCTCCTTCTCCCCACAGCTGAAGGTGATGTTCC ATTCCTCTTCTCCTTCTCCCCACGGCTGAAGGTGATGTTCC < 41bp 0.540647579013344 0.76974758913894 0.14583424 0.15113643 prediction 0.458200020251191 Functional Gain - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35509143 chr20:35509146 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_115590 0 0 0 0 2 TLDC2 chr20:35509153 5'GT 35509153 Upstream 8bp
chr5 137521736 137521736 1 + C A GBM 137521735 + 137521715 137521755 41 GACAAGAAGTTAGAAGAGGGCCAGAAGGTAATTACCACCAT GACAAGAAGTTAGAAGAGGGCAAGAAGGTAATTACCACCAT < 41bp 0.57968436031066 0.808770126697878 0.20882022 0.3443942 prediction 0.458171532774435 Functional Gain - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137521735 chr5:137521736 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_115593 0 0 1 0 1 KIF20A chr5:137521741 5'GT 137521741 Upstream 6bp
chr6 123039098 123039098 1 + C T UCEC 123039097 + 123039077 123039117 41 CCTCAAACTGGAGGCTCTCTCCGTGAAGGAAGGTAATACTC CCTCAAACTGGAGGCTCTCTCTGTGAAGGAAGGTAATACTC < 41bp 0.52805371767369 0.757126206086076 0.44592842 0.6339454 prediction 0.458144976824772 Functional Gain - PKIB ENSG00000135549 CDS Human protein_coding chr6:123039097 chr6:123039098 synonymous SNV . 0 22 hm5C_associated_SNPs_115595 0 0 1 0 1 PKIB chr6:123039108 5'GT 123039108 Upstream 11bp
chr17 8172143 8172143 1 + C T HNSC 8172142 + 8172122 8172162 41 GCTGCGAGGGATGGAGGGCGCCGTGCTGCCCGTGTGGAGTG GCTGCGAGGGATGGAGGGCGCTGTGCTGCCCGTGTGGAGTG < 41bp 0.501291225254515 0.730358520884253 0.15372518 0.18875936 prediction 0.458134591259477 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8172142 chr17:8172143 synonymous SNV . 0 22 hm5C_associated_SNPs_115597 0 0 1 0 1 PFAS chr17:8172174 5'GT 8172174 Upstream 32bp
chr19 58048653 58048653 1 + C T SKCM 58048652 + 58048632 58048672 41 GAGTGTCACAGGCCAGGACTCCAAAGCTAGGTCCTTCCATC GAGTGTCACAGGCCAGGACTCTAAAGCTAGGTCCTTCCATC < 41bp 0.511740120751286 0.740805567975817 0.5146428 0.73833835 prediction 0.458130894449061 Functional Gain - ZNF549 ENSG00000121406 CDS Human protein_coding chr19:58048652 chr19:58048653 nonsynonymous SNV 0.026 0 22 hm5C_associated_SNPs_115600 0 0 1 0 1 ZNF549 chr19:58048572 3'AG 58048572 Downstream 82bp
chr4 56230294 56230294 1 + A G rs541054119 56230291 + 56230271 56230311 41 TGCTAGTATTTCTGTGGCTGCACAGCTTACGAAGACTCTTC TGCTAGTATTTCTGTGGCTGCACGGCTTACGAAGACTCTTC < 41bp 0.529499471415773 0.758556247838788 0.012492955 0.05122152 prediction 0.458113552846032 Functional Gain - SRD5A3 ENSG00000128039 CDS Human protein_coding chr4:56230291 chr4:56230294 nonsynonymous SNV 0.538 3 24 hm5C_associated_SNPs_115605 0 0 0 0 1 SRD5A3 chr4:56230241 3'AG 56230241 Downstream 54bp
chr1 22925442 22925442 1 + C A LUAD 22925441 + 22925421 22925461 41 GTCCACCGAGACCTGGCCGCCCGCAACGTCCTGGTTGACAG GTCCACCGAGACCTGGCCGCCAGCAACGTCCTGGTTGACAG < 41bp 0.468061477297869 0.729055411740536 0.09320834 0.53021854 prediction 0.458110823481072 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22925441 chr1:22925442 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_115606 0 0 0 0 1 EPHA8 chr1:22925540 5'GT 22925540 Upstream 99bp
chr19 36255969 36255969 1 + C T SKCM 36255968 + 36255948 36255988 41 TCCTCCTCCTCCTCCCTCAGCCCCAGCGATGCCAGCACTTC TCCTCCTCCTCCTCCCTCAGCTCCAGCGATGCCAGCACTTC < 41bp 0.445749259709573 0.729055233448319 0.19373885 0.61609375 prediction 0.458110466896637 Functional Gain - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36255968 chr19:36255969 nonsynonymous SNV 0.794 1 22 hm5C_associated_SNPs_115607 0 0 0 0 1 PROSER3 chr19:36255935 3'AG 36255935 Downstream 35bp
chr2 31483756 31483756 1 + A G GBM 31483753 + 31483733 31483773 41 GAAATGCTGCCCTGCGCAAGCTCAACGACCTCATCAAAAGG GAAATGCTGCCCTGCGCAAGCTCGACGACCTCATCAAAAGG < 41bp 0.544795490899039 0.773841407674471 0.4203722 0.38828096 prediction 0.458091833550863 Functional Gain - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31483753 chr2:31483756 nonsynonymous SNV 0.991 3 24 hm5C_associated_SNPs_115609 0 0 0 0 1 EHD3 chr2:31483788 5'GT 31483788 Upstream 33bp
chr20 43246949 43246949 1 + C G BLCA 43246945 + 43246925 43246965 41 GAAGGACAGGTGGAGGGAAGCGCCCCAGACAAGGAAGCTGG GAAGGACAGGTGGAGGGAAGCGCCGCAGACAAGGAAGCTGG < 41bp 0.61674363676463 0.845782551920654 0.36781973 0.4175443 prediction 0.458077830312049 Functional Gain - PKIG ENSG00000168734 CDS Human protein_coding chr20:43246945 chr20:43246949 nonsynonymous SNV 0.252 0 25 hm5C_associated_SNPs_115610 0 0 0 0 1 PKIG chr20:43246926 3'AG 43246926 Downstream 24bp
chr17 37070713 37070713 1 + C T SKCM 37070712 + 37070692 37070732 41 CAGCAGCAGCCTCACCACATCCCGACCAGTGCCCCGGGTGA CAGCAGCAGCCTCACCACATCTCGACCAGTGCCCCGGGTGA < 41bp 0.591070675187841 0.820106544854622 0.2941737 0.7423039 prediction 0.458071739333562 Functional Gain - LASP1 ENSG00000002834 CDS Human protein_coding chr17:37070712 chr17:37070713 nonsynonymous SNV 0.972 0 22 hm5C_associated_SNPs_115611 0 0 1 0 1 LASP1 chr17:37070728 5'GT 37070728 Upstream 16bp
chr4 187209681 187209681 1 + A G STAD 187209678 + 187209658 187209698 41 GTAGGCATCACGAGCTGGGGCGAAGGCTGTGCTCAAAGGGA GTAGGCATCACGAGCTGGGGCGAGGGCTGTGCTCAAAGGGA < 41bp 0.554396775925812 0.783432407878251 0.08366683 0.5372931 prediction 0.458071263904878 Functional Gain - F11 ENSG00000088926 CDS Human protein_coding chr4:187209678 chr4:187209681 synonymous SNV . 0 24 hm5C_associated_SNPs_115612 0 0 1 0 1 F11 chr4:187209607 3'AG 187209607 Downstream 75bp
chr9 96435920 96435920 1 + T C STAD 96435918 + 96435898 96435938 41 GCCATTCAGGGAATGCTGTCCATGGCCAACCTGCAGGCCTC GCCATTCAGGGAATGCTGTCCACGGCCAACCTGCAGGCCTC < 41bp 0.584276146092529 0.813311187687019 0.23240268 0.33432668 prediction 0.458070083188979 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96435918 chr9:96435920 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_115613 0 0 0 0 1 PHF2 chr9:96435867 3'AG 96435867 Downstream 54bp
chr11 65734964 65734964 1 + C T SKCM 65734963 + 65734943 65734983 41 CTGCGGGGACGGGGTCGCCGCCGAGTGTCCGAAGTGGAGGA CTGCGGGGACGGGGTCGCCGCTGAGTGTCCGAAGTGGAGGA < 41bp 0.491879318437608 0.729033957520478 0.3658469 0.20666656 prediction 0.458067915040957 Functional Gain - SART1 ENSG00000175467 CDS Human protein_coding chr11:65734963 chr11:65734964 stopgain 0.008 0 22 hm5C_associated_SNPs_115614 0 0 1 0 1 SART1 chr11:65734942 3'AG 65734942 Downstream 23bp
chr19 15770110 15770110 1 + C T SKCM 15770109 + 15770089 15770129 41 TGCTGCGCTTCCGCGTCCTGCCTGACCACACCGAGCCCCGC TGCTGCGCTTCCGCGTCCTGCTTGACCACACCGAGCCCCGC < 41bp 0.542553084800538 0.7715863516443 0.1255514 0.24338317 prediction 0.458066533687523 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15770109 chr19:15770110 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_115615 0 0 0 0 1 CYP4F3 chr19:15770030 3'AG 15770030 Downstream 81bp
chr12 12788821 12788821 1 + C T SKCM 12788820 + 12788800 12788840 41 GAGTGCAAGAGAATGCCGAGCCCGAAAAAAGCTGAGATATC GAGTGCAAGAGAATGCCGAGCTCGAAAAAAGCTGAGATATC < 41bp 0.589228703008595 0.818254366813787 0.22204629 0.123102516 prediction 0.458051327610386 Functional Gain - CREBL2 ENSG00000111269 CDS Human protein_coding chr12:12788820 chr12:12788821 synonymous SNV . 0 22 hm5C_associated_SNPs_115617 0 0 1 0 1 CREBL2 chr12:12788908 5'GT 12788908 Upstream 88bp
chr8 11606487 11606487 1 + C A LUAD 11606483 + 11606463 11606503 41 GTCAACTGTGGGGCTATGTCCACCCCGCTCTGGAGGCGAGA GTCAACTGTGGGGCTATGTCCACCACGCTCTGGAGGCGAGA < 41bp 0.303102748700921 0.729021538634476 0.20806724 0.1557248 prediction 0.458043077268952 Functional Gain - GATA4 ENSG00000136574 CDS Human protein_coding chr8:11606483 chr8:11606487 nonsynonymous SNV 0.979 5 25 hm5C_associated_SNPs_115618 0 0 1 0 2 GATA4 chr8:11606425 3'AG 11606425 Downstream 63bp
chr8 11606487 11606487 1 + C A LUAD 11606483 + 11606463 11606503 41 GTCAACTGTGGGGCTATGTCCACCCCGCTCTGGAGGCGAGA GTCAACTGTGGGGCTATGTCCACCACGCTCTGGAGGCGAGA < 41bp 0.303102748700921 0.729021538634476 0.20806724 0.1557248 prediction 0.458043077268952 Functional Gain - GATA4 ENSG00000136574 CDS Human protein_coding chr8:11606483 chr8:11606487 nonsynonymous SNV 0.979 5 25 hm5C_associated_SNPs_115618 0 0 1 0 2 GATA4 chr8:11606428 3'AG 11606428 Downstream 60bp
chr5 79355683 79355683 1 + C T UCEC 79355682 + 79355662 79355702 41 CTTCCAGTGTGGGCCCTGCCCCGAGGGCTACACAGGAAACG CTTCCAGTGTGGGCCCTGCCCTGAGGGCTACACAGGAAACG < 41bp 0.563483277637713 0.792503423610547 0.4216277 0.094383955 prediction 0.458040291945668 Functional Gain - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79355682 chr5:79355683 synonymous SNV . 0 22 hm5C_associated_SNPs_115619 0 0 0 0 1 THBS4 chr5:79355728 5'GT 79355728 Upstream 46bp
chr2 189854839 189854839 1 + C T UCEC 189854838 + 189854818 189854858 41 CTAGGGAGAATCAGGTAGACCCGGACGACCTGGAGAGCGAG CTAGGGAGAATCAGGTAGACCTGGACGACCTGGAGAGCGAG < 41bp 0.542003415043849 0.77102336319215 0.91029465 0.90410745 prediction 0.458039896296601 Functional Gain - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189854838 chr2:189854839 synonymous SNV . 0 22 hm5C_associated_SNPs_115620 0 0 0 0 2 COL3A1 chr2:189854822 3'AG 189854822 Downstream 18bp
chr2 189854839 189854839 1 + C T UCEC 189854838 + 189854818 189854858 41 CTAGGGAGAATCAGGTAGACCCGGACGACCTGGAGAGCGAG CTAGGGAGAATCAGGTAGACCTGGACGACCTGGAGAGCGAG < 41bp 0.542003415043849 0.77102336319215 0.91029465 0.90410745 prediction 0.458039896296601 Functional Gain - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189854838 chr2:189854839 synonymous SNV . 0 22 hm5C_associated_SNPs_115620 0 0 0 0 2 COL3A1 chr2:189854875 5'GT 189854875 Upstream 37bp
chr9 135919225 135919225 1 + C A rs150056568 135919224 + 135919204 135919244 41 GAGAAGGAGGCCTTTTTCCACCAGGAGCTGCCGCTCTACAT GAGAAGGAGGCCTTTTTCCACAAGGAGCTGCCGCTCTACAT < 41bp 0.585079920685633 0.814095371171339 0.72922 0.5215293 prediction 0.458030900971412 Functional Gain - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919224 chr9:135919225 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_115623 0 0 1 0 1 GTF3C5 chr9:135919313 5'GT 135919313 Upstream 89bp
chr10 114711350 114711350 1 + C A ACC 114711346 + 114711326 114711366 41 CCTACCTCCCCAACGGATCGCTCTCGCCCACCGCCCGAACC CCTACCTCCCCAACGGATCGCTCTAGCCCACCGCCCGAACC < 41bp 0.415725481056125 0.729005168123318 0.09373587 0.6662482 prediction 0.458010336246635 Functional Gain - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114711346 chr10:114711350 stopgain 0.976 0 25 hm5C_associated_SNPs_115624 0 0 0 0 1 TCF7L2 chr10:114711366 5'GT 114711366 Upstream 17bp
chr6 32411144 32411144 1 + C T SKCM 32411143 + 32411123 32411163 41 CCCAGGGAAGACCACCTTTTCCGCAAGTTCCACTATCTCCC CCCAGGGAAGACCACCTTTTCTGCAAGTTCCACTATCTCCC < 41bp 0.502684250241489 0.731686690162725 0.13468003 0.12183982 prediction 0.458004879842474 Functional Gain - HLA-DRA ENSG00000204287 CDS Human protein_coding chr6:32411143 chr6:32411144 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_115625 0 0 0 0 1 HLA-DRA chr6:32411243 5'GT 32411243 Upstream 100bp
chr2 114356239 114356239 1 + T A rs11490622 114356235 + 114356215 114356255 41 GGGGCCCGGAGGAGCCTTTGCCCGTGTGTCAGACTCCATCC GGGGCCCGGAGGAGCCTTTGCCCGAGTGTCAGACTCCATCC < 41bp 0.633734521473569 0.862734606195124 0.23140755 0.49598122 prediction 0.458000169443111 Functional Gain - WASH2P ENSG00000146556 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:114356235 chr2:114356239 . . 0 25 hm5C_associated_SNPs_115626 0 0 1 0 1 WASH2P chr2:114356184 3'AG 114356184 Downstream 56bp
chr7 143029922 143029922 1 + C T BRCA 143029921 + 143029901 143029941 41 TCAGCTGTGTGGATTCACCCCCGGGTCAACGTTGTCATCAT TCAGCTGTGTGGATTCACCCCTGGGTCAACGTTGTCATCAT < 41bp 0.543640619602252 0.772640427633111 0.43563595 0.32259566 prediction 0.457999616061718 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143029921 chr7:143029922 nonsynonymous SNV 0.703 2 22 hm5C_associated_SNPs_115628 1 0 0 0 1 CLCN1 chr7:143029966 5'GT 143029966 Upstream 45bp
chr15 75044163 75044163 1 + C T SKCM 75044162 + 75044142 75044182 41 TCATGTACCTTGTGACCAAGCCTGAGATACAGAGGAAGATC TCATGTACCTTGTGACCAAGCTTGAGATACAGAGGAAGATC < 41bp 0.473881730772595 0.728992367782131 0.09512094 0.03576061 prediction 0.457984735564263 Functional Gain - CYP1A2 ENSG00000140505 CDS Human protein_coding chr15:75044162 chr15:75044163 nonsynonymous SNV 0.002 4 22 hm5C_associated_SNPs_115635 0 0 0 0 2 CYP1A2 chr15:75044106 3'AG 75044106 Downstream 58bp
chr15 75044163 75044163 1 + C T SKCM 75044162 + 75044142 75044182 41 TCATGTACCTTGTGACCAAGCCTGAGATACAGAGGAAGATC TCATGTACCTTGTGACCAAGCTTGAGATACAGAGGAAGATC < 41bp 0.473881730772595 0.728992367782131 0.09512094 0.03576061 prediction 0.457984735564263 Functional Gain - CYP1A2 ENSG00000140505 CDS Human protein_coding chr15:75044162 chr15:75044163 nonsynonymous SNV 0.002 4 22 hm5C_associated_SNPs_115635 0 0 0 0 2 CYP1A2 chr15:75044195 5'GT 75044195 Upstream 33bp
chr2 30457350 30457350 1 + C T BLCA 30457349 + 30457329 30457369 41 GAGGAGATCGGCCTCAGCCCCCGCAAGGATGGCCTTTCCTA GAGGAGATCGGCCTCAGCCCCTGCAAGGATGGCCTTTCCTA < 41bp 0.582972311516721 0.811961156816931 0.43067032 0.8265557 prediction 0.457977690600421 Functional Gain - LBH ENSG00000213626 CDS Human protein_coding chr2:30457349 chr2:30457350 nonsynonymous SNV 0.988 4 22 hm5C_associated_SNPs_115638 0 0 1 0 2 LBH chr2:30457271 3'AG 30457271 Downstream 80bp
chr2 30457350 30457350 1 + C T BLCA 30457349 + 30457329 30457369 41 GAGGAGATCGGCCTCAGCCCCCGCAAGGATGGCCTTTCCTA GAGGAGATCGGCCTCAGCCCCTGCAAGGATGGCCTTTCCTA < 41bp 0.582972311516721 0.811961156816931 0.43067032 0.8265557 prediction 0.457977690600421 Functional Gain - LBH ENSG00000213626 CDS Human protein_coding chr2:30457349 chr2:30457350 nonsynonymous SNV 0.988 4 22 hm5C_associated_SNPs_115638 0 0 1 0 2 LBH chr2:30457373 5'GT 30457373 Upstream 24bp
chr3 186358445 186358445 1 + C T COAD 186358444 + 186358424 186358464 41 GGCTATGTGCTGAGACTCAACCGAGTGAACGACGCCCAGGA GGCTATGTGCTGAGACTCAACTGAGTGAACGACGCCCAGGA < 41bp 0.526048491568167 0.755035860761026 0.8932271 0.4397333 prediction 0.457974738385718 Functional Gain - FETUB ENSG00000090512 CDS Human protein_coding chr3:186358444 chr3:186358445 stopgain 0.977 0 22 hm5C_associated_SNPs_115639 0 0 0 0 1 FETUB chr3:186358478 5'GT 186358478 Upstream 34bp
chr15 45047534 45047534 1 + A G LUAD 45047531 + 45047511 45047551 41 TCGGTTGTCTGTGGGGCAGTCTAAGGAGTTCCTGCAAATCT TCGGTTGTCTGTGGGGCAGTCTAGGGAGTTCCTGCAAATCT < 41bp 0.520970773368392 0.749951079426007 0.30264133 0.55822104 prediction 0.457960612115231 Functional Gain - TRIM69 ENSG00000185880 CDS Human protein_coding chr15:45047531 chr15:45047534 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_115641 0 0 0 0 1 TRIM69 chr15:45047574 5'GT 45047574 Upstream 41bp
chr1 206650147 206650147 1 + C T SKCM 206650146 + 206650126 206650166 41 ACTGGCAGCCTGCCCTTCATCCCCTTTGGTGGGCCACGGCG ACTGGCAGCCTGCCCTTCATCTCCTTTGGTGGGCCACGGCG < 41bp 0.461450017948159 0.728979664648978 0.1355617 0.41535562 prediction 0.457959329297957 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206650146 chr1:206650147 nonsynonymous SNV 0.408 3 22 hm5C_associated_SNPs_115642 0 0 0 0 1 IKBKE chr1:206650181 5'GT 206650181 Upstream 35bp
chr1 25775335 25775335 1 + T C UCEC 25775333 + 25775313 25775353 41 TTTTGTTTGTGTAGCATTCACGTCAAATATAATATGCCTGC TTTTGTTTGTGTAGCATTCACGCCAAATATAATATGCCTGC < 41bp 0.442349863980303 0.728966062059603 0.054416627 0.2114892 prediction 0.457932124119206 Functional Gain - TMEM57 ENSG00000204178 CDS Human protein_coding chr1:25775333 chr1:25775335 nonsynonymous SNV 0.887 4 23 hm5C_associated_SNPs_115644 0 0 1 1 2 TMEM57 chr1:25775299 3'AG 25775299 Downstream 37bp
chr1 25775335 25775335 1 + T C UCEC 25775333 + 25775313 25775353 41 TTTTGTTTGTGTAGCATTCACGTCAAATATAATATGCCTGC TTTTGTTTGTGTAGCATTCACGCCAAATATAATATGCCTGC < 41bp 0.442349863980303 0.728966062059603 0.054416627 0.2114892 prediction 0.457932124119206 Functional Gain - TMEM57 ENSG00000204178 CDS Human protein_coding chr1:25775333 chr1:25775335 nonsynonymous SNV 0.887 4 23 hm5C_associated_SNPs_115644 0 0 1 1 2 TMEM57 chr1:25775425 5'GT 25775425 Upstream 91bp
chr7 73106938 73106938 1 + C T LUSC 73106937 + 73106917 73106957 41 TTCTTTCAGGTCCGGGGATCCCGAGCTGTCCTGCAGCTGTA TTCTTTCAGGTCCGGGGATCCTGAGCTGTCCTGCAGCTGTA < 41bp 0.484255520181155 0.728961448697531 0.5093463 0.7619661 prediction 0.457922897395062 Functional Gain - BUD23 ENSG00000071462 CDS Human protein_coding chr7:73106937 chr7:73106938 stopgain 0.833 1 22 hm5C_associated_SNPs_115648 0 0 1 0 2 BUD23 chr7:73106926 3'AG 73106926 Downstream 13bp
chr7 73106938 73106938 1 + C T LUSC 73106937 + 73106917 73106957 41 TTCTTTCAGGTCCGGGGATCCCGAGCTGTCCTGCAGCTGTA TTCTTTCAGGTCCGGGGATCCTGAGCTGTCCTGCAGCTGTA < 41bp 0.484255520181155 0.728961448697531 0.5093463 0.7619661 prediction 0.457922897395062 Functional Gain - BUD23 ENSG00000071462 CDS Human protein_coding chr7:73106937 chr7:73106938 stopgain 0.833 1 22 hm5C_associated_SNPs_115648 0 0 1 0 2 BUD23 chr7:73106976 5'GT 73106976 Upstream 39bp
chrX 154003527 154003527 1 + C T COAD 154003526 + 154003506 154003546 41 AAAAGCCCCGCAGGTAGTTGCCGAAGCAGCAAAAACTGCGA AAAAGCCCCGCAGGTAGTTGCTGAAGCAGCAAAAACTGCGA < 41bp 0.538589338326947 0.767535465468617 0.63745457 0.4367516 prediction 0.45789225428334 Functional Gain - DKC1 ENSG00000130826 CDS Human protein_coding chrX:154003526 chrX:154003527 synonymous SNV . 0 22 hm5C_associated_SNPs_115651 1 0 1 0 2 DKC1 chrX:154003470 3'AG 154003470 Downstream 58bp
chrX 154003527 154003527 1 + C T COAD 154003526 + 154003506 154003546 41 AAAAGCCCCGCAGGTAGTTGCCGAAGCAGCAAAAACTGCGA AAAAGCCCCGCAGGTAGTTGCTGAAGCAGCAAAAACTGCGA < 41bp 0.538589338326947 0.767535465468617 0.63745457 0.4367516 prediction 0.45789225428334 Functional Gain - DKC1 ENSG00000130826 CDS Human protein_coding chrX:154003526 chrX:154003527 synonymous SNV . 0 22 hm5C_associated_SNPs_115651 1 0 1 0 2 DKC1 chrX:154003548 5'GT 154003548 Upstream 22bp
chr17 77040120 77040120 1 + C A STAD 77040119 + 77040099 77040139 41 GCCTTTGCCTCTGGCCTGGTCCTGAGTCGTGTGCCCCATGT GCCTTTGCCTCTGGCCTGGTCATGAGTCGTGTGCCCCATGT < 41bp 0.567381608282433 0.796324341384287 0.23053733 0.28446436 prediction 0.457885466203708 Functional Gain - C1QTNF1 ENSG00000173918 CDS Human protein_coding chr17:77040119 chr17:77040120 nonsynonymous SNV 0.470 3 22 hm5C_associated_SNPs_115654 0 0 0 0 2 C1QTNF1 chr17:77040037 3'AG 77040037 Downstream 84bp
chr17 77040120 77040120 1 + C A STAD 77040119 + 77040099 77040139 41 GCCTTTGCCTCTGGCCTGGTCCTGAGTCGTGTGCCCCATGT GCCTTTGCCTCTGGCCTGGTCATGAGTCGTGTGCCCCATGT < 41bp 0.567381608282433 0.796324341384287 0.23053733 0.28446436 prediction 0.457885466203708 Functional Gain - C1QTNF1 ENSG00000173918 CDS Human protein_coding chr17:77040119 chr17:77040120 nonsynonymous SNV 0.470 3 22 hm5C_associated_SNPs_115654 0 0 0 0 2 C1QTNF1 chr17:77040205 5'GT 77040205 Upstream 86bp
chr6 44148730 44148730 1 + T A LUSC 44148726 + 44148706 44148746 41 CTTGCCGCTGCATGATCAACCTCATGGATGTATCCTCCTGT CTTGCCGCTGCATGATCAACCTCAAGGATGTATCCTCCTGT < 41bp 0.395572279465129 0.72893916162472 0.047455788 0.04685545 prediction 0.45787832324944 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44148726 chr6:44148730 nonsynonymous SNV 0.981 2 25 hm5C_associated_SNPs_115656 0 0 0 0 2 CAPN11 chr6:44148670 3'AG 44148670 Downstream 61bp
chr6 44148730 44148730 1 + T A LUSC 44148726 + 44148706 44148746 41 CTTGCCGCTGCATGATCAACCTCATGGATGTATCCTCCTGT CTTGCCGCTGCATGATCAACCTCAAGGATGTATCCTCCTGT < 41bp 0.395572279465129 0.72893916162472 0.047455788 0.04685545 prediction 0.45787832324944 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44148726 chr6:44148730 nonsynonymous SNV 0.981 2 25 hm5C_associated_SNPs_115656 0 0 0 0 2 CAPN11 chr6:44148734 5'GT 44148734 Upstream 5bp
chr1 205031571 205031571 1 + C T COAD 205031570 + 205031550 205031590 41 CTGGGCTCTTCTGCACAGAACCGGGTGGAGGTGTTGGCTGG CTGGGCTCTTCTGCACAGAACTGGGTGGAGGTGTTGGCTGG < 41bp 0.519475564851828 0.748403675518925 0.89559895 0.83476996 prediction 0.457856221334194 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205031570 chr1:205031571 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_115659 0 0 0 0 1 CNTN2 chr1:205031568 3'AG 205031568 Downstream 4bp
chr12 58017834 58017834 1 + C A LUSC 58017833 + 58017813 58017853 41 AGCATGCGCCAGGTGTTCTGCCAGATGCAGGAACTTCCACA AGCATGCGCCAGGTGTTCTGCAAGATGCAGGAACTTCCACA < 41bp 0.580149453574709 0.809073983254499 0.63473153 0.2136991 prediction 0.45784905935958 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58017833 chr12:58017834 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_115660 0 0 0 0 2 SLC26A10 chr12:58017786 3'AG 58017786 Downstream 49bp
chr12 58017834 58017834 1 + C A LUSC 58017833 + 58017813 58017853 41 AGCATGCGCCAGGTGTTCTGCCAGATGCAGGAACTTCCACA AGCATGCGCCAGGTGTTCTGCAAGATGCAGGAACTTCCACA < 41bp 0.580149453574709 0.809073983254499 0.63473153 0.2136991 prediction 0.45784905935958 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58017833 chr12:58017834 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_115660 0 0 0 0 2 SLC26A10 chr12:58017881 5'GT 58017881 Upstream 48bp
chr18 33848543 33848543 1 + C T SKCM 33848542 + 33848522 33848562 41 TGCATCATTGGATTTATCCTCCCCATGTTTCCTGTCTGTAG TGCATCATTGGATTTATCCTCTCCATGTTTCCTGTCTGTAG < 41bp 0.459654436001086 0.728924213271495 0.031962544 0.9461632 prediction 0.45784842654299 Functional Gain - MOCOS ENSG00000075643 CDS Human protein_coding chr18:33848542 chr18:33848543 synonymous SNV . 0 22 hm5C_associated_SNPs_115661 0 0 1 0 1 MOCOS chr18:33848496 3'AG 33848496 Downstream 48bp
chr4 75938298 75938298 1 + T C UCEC 75938296 + 75938276 75938316 41 GTGATGTGTGAGCTCATAGACATGGAGACCACCACCACCTT GTGATGTGTGAGCTCATAGACACGGAGACCACCACCACCTT < 41bp 0.593007453192058 0.821925163702704 0.7593293 0.783326 prediction 0.457835421021292 Functional Gain - PARM1 ENSG00000169116 CDS Human protein_coding chr4:75938296 chr4:75938298 nonsynonymous SNV 0.016 0 23 hm5C_associated_SNPs_115663 0 0 0 0 1 PARM1 chr4:75938360 5'GT 75938360 Upstream 63bp
chr22 42300878 42300878 1 + T C rs80119854 42300876 + 42300856 42300896 41 CACCTCCCCAGGTGTTCCTGCATGAAGCCACCGTGCGCCTG CACCTCCCCAGGTGTTCCTGCACGAAGCCACCGTGCGCCTG < 41bp 0.469414024663934 0.728910129446239 0.6529985 0.6221651 prediction 0.457820258892478 Functional Gain - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42300876 chr22:42300878 synonymous SNV . 0 23 hm5C_associated_SNPs_115666 0 0 1 0 1 SREBF2 chr22:42300867 3'AG 42300867 Downstream 12bp
chr19 33463214 33463214 1 + C G rs79371948 33463213 + 33463193 33463233 41 CTGGGACGGTGGGGTTCCTGCCGGCTGTATTCGGGCCTTGG CTGGGACGGTGGGGTTCCTGCGGGCTGTATTCGGGCCTTGG < 41bp 0.455989639835907 0.728909650963659 0.8965707 0.9085916 prediction 0.457819301927318 Functional Gain - FAAP24 ENSG00000131944 UTR5 Human protein_coding chr19:33463213 chr19:33463214 . . 0 22 hm5C_associated_SNPs_115667 0 0 1 0 1 FAAP24 chr19:33463252 5'GT 33463252 Upstream 39bp
chr20 30154072 30154072 1 + C G HNSC 30154071 + 30154051 30154091 41 TCCTGTCCTGGTGGCGCTGGCCAAGGGAGAAGTGACAGAGA TCCTGTCCTGGTGGCGCTGGCGAAGGGAGAAGTGACAGAGA < 41bp 0.405350753896575 0.728908323369557 0.38200557 0.75140357 prediction 0.457816646739115 Functional Gain - HM13 ENSG00000101294 CDS Human protein_coding chr20:30154071 chr20:30154072 synonymous SNV . 0 22 hm5C_associated_SNPs_115669 0 0 1 0 2 HM13 chr20:30154013 3'AG 30154013 Downstream 60bp
chr20 30154072 30154072 1 + C G HNSC 30154071 + 30154051 30154091 41 TCCTGTCCTGGTGGCGCTGGCCAAGGGAGAAGTGACAGAGA TCCTGTCCTGGTGGCGCTGGCGAAGGGAGAAGTGACAGAGA < 41bp 0.405350753896575 0.728908323369557 0.38200557 0.75140357 prediction 0.457816646739115 Functional Gain - HM13 ENSG00000101294 CDS Human protein_coding chr20:30154071 chr20:30154072 synonymous SNV . 0 22 hm5C_associated_SNPs_115669 0 0 1 0 2 HM13 chr20:30154098 5'GT 30154098 Upstream 27bp
chr15 63893515 63893515 1 + C A LUSC 63893514 + 63893494 63893534 41 GGCTTTCTGCTGTGCGCTCCCCACGGAGGCGGGAGGCGCCT GGCTTTCTGCTGTGCGCTCCCAACGGAGGCGGGAGGCGCCT < 41bp 0.557243736383648 0.786146953916831 0.31096023 0.61075324 prediction 0.457806435066365 Functional Gain - FBXL22 ENSG00000197361 CDS Human protein_coding chr15:63893514 chr15:63893515 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_115672 0 0 0 0 1 FBXL22 chr15:63893495 3'AG 63893495 Downstream 21bp
chr2 11767109 11767109 1 + C T HNSC 11767108 + 11767088 11767128 41 ACAGAGGGATGTCCCGGAAGCCGGAGGACCTTTATGTGCGG ACAGAGGGATGTCCCGGAAGCTGGAGGACCTTTATGTGCGG < 41bp 0.534277524864025 0.763175670894207 0.64884186 0.40592152 prediction 0.457796292060364 Functional Gain - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11767108 chr2:11767109 nonsynonymous SNV 0.917 0 22 hm5C_associated_SNPs_115674 0 0 1 0 1 GREB1 chr2:11767088 3'AG 11767088 Downstream 22bp
chr8 22863569 22863569 1 + C A UCEC 22863568 + 22863548 22863588 41 AGAAATCAAGCACTTCTGCCCCCGAGCACCTGTCATCTTGG AGAAATCAAGCACTTCTGCCCACGAGCACCTGTCATCTTGG < 41bp 0.462074216228704 0.728880675156107 0.097887695 0.19368944 prediction 0.457761350312214 Functional Gain - RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22863568 chr8:22863569 synonymous SNV . 0 22 hm5C_associated_SNPs_115679 0 0 0 0 2 RHOBTB2 chr8:22863473 3'AG 22863473 Downstream 97bp
chr8 22863569 22863569 1 + C A UCEC 22863568 + 22863548 22863588 41 AGAAATCAAGCACTTCTGCCCCCGAGCACCTGTCATCTTGG AGAAATCAAGCACTTCTGCCCACGAGCACCTGTCATCTTGG < 41bp 0.462074216228704 0.728880675156107 0.097887695 0.19368944 prediction 0.457761350312214 Functional Gain - RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22863568 chr8:22863569 synonymous SNV . 0 22 hm5C_associated_SNPs_115679 0 0 0 0 2 RHOBTB2 chr8:22863658 5'GT 22863658 Upstream 90bp
chr1 1389841 1389841 1 + C T SKCM 1389840 + 1389820 1389860 41 GTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTTGAGG GTCCCTAGTGAGGGAGACGTCTCGCATCACGGTGCTTGAGG < 41bp 0.548966099806272 0.777839493281843 0.1931737 0.23729241 prediction 0.457746786951142 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1389840 chr1:1389841 synonymous SNV . 0 22 hm5C_associated_SNPs_115681 0 0 0 0 1 ATAD3C chr1:1389880 5'GT 1389880 Upstream 40bp
chr12 100904652 100904652 1 + C A OV 100904648 + 100904628 100904668 41 ATGTTCAGTTTCCCCAAGTTCAACCACAGATTTCCTCGTCA ATGTTCAGTTTCCCCAAGTTCAACAACAGATTTCCTCGTCA < 41bp 0.30348245766808 0.728871807680104 0.06702173 0.064368665 prediction 0.457743615360209 Functional Gain - NR1H4 ENSG00000012504 CDS Human protein_coding chr12:100904648 chr12:100904652 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_115683 0 0 1 0 1 NR1H4 chr12:100904556 3'AG 100904556 Downstream 97bp
chr17 45608784 45608784 1 + C T rs200065879 45608783 + 45608763 45608803 41 TCTCGCCGCCGCCTCCACAGCCTGGGCCTCGCCGCGATGCC TCTCGCCGCCGCCTCCACAGCTTGGGCCTCGCCGCGATGCC < 41bp 0.510352654289078 0.73922234413869 0.5659838 0.23316184 prediction 0.457739379699224 Functional Gain - NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45608783 chr17:45608784 synonymous SNV . 0 22 hm5C_associated_SNPs_115685 0 0 0 0 1 NPEPPS chr17:45608756 3'AG 45608756 Downstream 29bp
chr1 171173087 171173087 1 + C T UCEC 171173086 + 171173066 171173106 41 TTGGGACTCAGTGTTCCACACCCGGTTTCGTTCTATGCTCC TTGGGACTCAGTGTTCCACACTCGGTTTCGTTCTATGCTCC < 41bp 0.564769508754026 0.793638255220916 0.1937896 0.28619006 prediction 0.45773749293378 Functional Gain - FMO2 ENSG00000094963 CDS Human protein_coding chr1:171173086 chr1:171173087 synonymous SNV . 0 22 hm5C_associated_SNPs_115686 0 0 0 0 1 FMO2 chr1:171173004 3'AG 171173004 Downstream 84bp
chrX 68836453 68836453 1 + C T rs182251004 68836452 + 68836432 68836472 41 GGTGGCCTCGACCCTGACAGCCCCATCACCAGTCACCTTGG GGTGGCCTCGACCCTGACAGCTCCATCACCAGTCACCTTGG < 41bp 0.55672158989493 0.785588639758562 0.08633894 0.8742738 prediction 0.457734099727264 Functional Gain - EDA ENSG00000158813 CDS Human protein_coding chrX:68836452 chrX:68836453 nonsynonymous SNV 0.953 2 22 hm5C_associated_SNPs_115687 0 0 1 0 1 EDA chrX:68836548 5'GT 68836548 Upstream 96bp
chr7 99917393 99917393 1 + C A CESC 99917389 + 99917369 99917409 41 CGGTTCCAGTTCTTCTGTTCCATGCGCTGCAGGGCTTGGGT CGGTTCCAGTTCTTCTGTTCCATGAGCTGCAGGGCTTGGGT < 41bp 0.31869666321947 0.728866671246922 0.34023643 0.5361626 prediction 0.457733342493843 Functional Gain - SPDYE3 ENSG00000214300 CDS Human protein_coding chr7:99917389 chr7:99917393 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_115688 0 0 0 0 1 SPDYE3 chr7:99917431 5'GT 99917431 Upstream 39bp
chr10 96602719 96602719 1 + C T SKCM 96602718 + 96602698 96602738 41 CAGAGATACATCGACCTCATCCCCACCAGCCTGCCCCATGC CAGAGATACATCGACCTCATCTCCACCAGCCTGCCCCATGC < 41bp 0.60507154182525 0.833930219570684 0.05811867 0.9379189 prediction 0.457717355490867 Functional Gain - CYP2C19 ENSG00000165841 CDS Human protein_coding chr10:96602718 chr10:96602719 nonsynonymous SNV 0.055 3 22 hm5C_associated_SNPs_115689 0 0 0 0 1 CYP2C19 chr10:96602781 5'GT 96602781 Upstream 63bp
chr17 41142437 41142437 1 + T A SKCM 41142433 + 41142413 41142453 41 CAGAACAGGCAGCAGCAGAACGCCTCCAGGAAACAGCAAAA CAGAACAGGCAGCAGCAGAACGCCACCAGGAAACAGCAAAA < 41bp 0.379297988321576 0.728849143412375 0.07008085 0.046931565 prediction 0.457698286824751 Functional Gain - RUNDC1 ENSG00000198863 CDS Human protein_coding chr17:41142433 chr17:41142437 synonymous SNV . 0 25 hm5C_associated_SNPs_115692 0 0 0 0 1 RUNDC1 chr17:41142453 5'GT 41142453 Upstream 17bp
chr6 34738119 34738119 1 + C T SKCM 34738118 + 34738098 34738138 41 CACCCCATATGGGGGGCCCTCCCATGATGCCAATGATGGGC CACCCCATATGGGGGGCCCTCTCATGATGCCAATGATGGGC < 41bp 0.585513380472626 0.814362380419882 0.37368664 0.18784022 prediction 0.457697999894511 Functional Gain - SNRPC ENSG00000124562 CDS Human protein_coding chr6:34738118 chr6:34738119 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_115693 0 0 1 0 2 SNRPC chr6:34738068 3'AG 34738068 Downstream 52bp
chr6 34738119 34738119 1 + C T SKCM 34738118 + 34738098 34738138 41 CACCCCATATGGGGGGCCCTCCCATGATGCCAATGATGGGC CACCCCATATGGGGGGCCCTCTCATGATGCCAATGATGGGC < 41bp 0.585513380472626 0.814362380419882 0.37368664 0.18784022 prediction 0.457697999894511 Functional Gain - SNRPC ENSG00000124562 CDS Human protein_coding chr6:34738118 chr6:34738119 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_115693 0 0 1 0 2 SNRPC chr6:34738172 5'GT 34738172 Upstream 54bp
chr17 29036734 29036734 1 + C A rs540642135 29036733 + 29036713 29036753 41 CACCTCCTACCAGCTTCCCCCCAGCCCCGGCTCCGGGAGAT CACCTCCTACCAGCTTCCCCCAAGCCCCGGCTCCGGGAGAT < 41bp 0.514584185104744 0.743430334314581 0.18213403 0.41862938 prediction 0.457692298419675 Functional Gain - SUZ12P1 ENSG00000264538 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:29036733 chr17:29036734 . . 0 22 hm5C_associated_SNPs_115694 0 0 1 0 1 SUZ12P1 chr17:29036829 5'GT 29036829 Upstream 96bp
chr6 139363897 139363897 1 + C T COAD 139363896 + 139363876 139363916 41 GTGAAATTTGGGGTCCTCTTCCGTGATGATAAATGTGCCAA GTGAAATTTGGGGTCCTCTTCTGTGATGATAAATGTGCCAA < 41bp 0.495911025364703 0.728844775553311 0.18557227 0.08180705 prediction 0.457689551106622 Functional Gain - ABRACL ENSG00000146386 CDS Human protein_coding chr6:139363896 chr6:139363897 nonsynonymous SNV 0.992 0 22 hm5C_associated_SNPs_115695 0 0 1 0 1 ABRACL chr6:139363856 3'AG 139363856 Downstream 42bp
chrX 37526709 37526709 1 + C A LUAD 37526705 + 37526685 37526725 41 TCTTCCTGCTGCTGTACCGGCTCACGGGAAACTCTAAATAC TCTTCCTGCTGCTGTACCGGCTCAAGGGAAACTCTAAATAC < 41bp 0.295237996083375 0.728837971040644 0.030772418 0.06616506 prediction 0.457675942081288 Functional Gain - LANCL3 ENSG00000147036 CDS Human protein_coding chrX:37526705 chrX:37526709 nonsynonymous SNV 0.949 4 25 hm5C_associated_SNPs_115699 0 0 0 0 1 LANCL3 chrX:37526742 5'GT 37526742 Upstream 34bp
chr20 58322835 58322835 1 + C A LUSC 58322831 + 58322811 58322851 41 AGCGCTGGAGAAGAAGATGGCCGGCAGGCAAGGCCGAGAGG AGCGCTGGAGAAGAAGATGGCCGGAAGGCAAGGCCGAGAGG < 41bp 0.32379717667318 0.728828541526011 0.28121603 0.39037943 prediction 0.457657083052023 Functional Gain - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58322831 chr20:58322835 synonymous SNV . 0 25 hm5C_associated_SNPs_115701 0 0 0 0 1 PHACTR3 chr20:58322813 3'AG 58322813 Downstream 23bp
chrX 153060182 153060182 1 + C G COAD 153060181 + 153060161 153060201 41 CTCGGCGCCCTGGCGCTGCTCCTGCTGTCCAGCCTCTCCCG CTCGGCGCCCTGGCGCTGCTCGTGCTGTCCAGCCTCTCCCG < 41bp 0.406966857803009 0.72882690630478 0.4483471 0.7812207 prediction 0.457653812609561 Functional Gain - SSR4 ENSG00000180879 CDS Human protein_coding chrX:153060181 chrX:153060182 nonsynonymous SNV 0.953 0 22 hm5C_associated_SNPs_115703 0 0 1 0 2 SSR4 chrX:153060129 3'AG 153060129 Downstream 54bp
chrX 153060182 153060182 1 + C G COAD 153060181 + 153060161 153060201 41 CTCGGCGCCCTGGCGCTGCTCCTGCTGTCCAGCCTCTCCCG CTCGGCGCCCTGGCGCTGCTCGTGCTGTCCAGCCTCTCCCG < 41bp 0.406966857803009 0.72882690630478 0.4483471 0.7812207 prediction 0.457653812609561 Functional Gain - SSR4 ENSG00000180879 CDS Human protein_coding chrX:153060181 chrX:153060182 nonsynonymous SNV 0.953 0 22 hm5C_associated_SNPs_115703 0 0 1 0 2 SSR4 chrX:153060209 5'GT 153060209 Upstream 28bp
chrX 144903985 144903985 1 + C A LIHC 144903984 + 144903964 144904004 41 CCTCAGTGTGTTAACCGTGGCCGGGATCTTACAGACAGAGA CCTCAGTGTGTTAACCGTGGCAGGGATCTTACAGACAGAGA < 41bp 0.558542244126988 0.787367887905161 0.33188078 0.6076733 prediction 0.457651287556345 Functional Gain - SLITRK2 ENSG00000185985 CDS Human protein_coding chrX:144903984 chrX:144903985 synonymous SNV . 0 22 hm5C_associated_SNPs_115707 0 0 0 0 2 SLITRK2 chrX:144903901 3'AG 144903901 Downstream 85bp
chrX 144903985 144903985 1 + C A LIHC 144903984 + 144903964 144904004 41 CCTCAGTGTGTTAACCGTGGCCGGGATCTTACAGACAGAGA CCTCAGTGTGTTAACCGTGGCAGGGATCTTACAGACAGAGA < 41bp 0.558542244126988 0.787367887905161 0.33188078 0.6076733 prediction 0.457651287556345 Functional Gain - SLITRK2 ENSG00000185985 CDS Human protein_coding chrX:144903984 chrX:144903985 synonymous SNV . 0 22 hm5C_associated_SNPs_115707 0 0 0 0 2 SLITRK2 chrX:144903913 3'AG 144903913 Downstream 73bp
chr9 74526699 74526699 1 + C T LUAD 74526698 + 74526678 74526718 41 CGTTCCAGACCTCAGAAGCACCAGAATACGTTTAGCTTCAA CGTTCCAGACCTCAGAAGCACTAGAATACGTTTAGCTTCAA < 41bp 0.519391499227097 0.748213306684469 0.21389124 0.21899039 prediction 0.457643614914743 Functional Gain - C9orf85 ENSG00000155621 CDS Human protein_coding chr9:74526698 chr9:74526699 stopgain 1.000 1 22 hm5C_associated_SNPs_115711 0 0 1 0 1 C9orf85 chr9:74526752 5'GT 74526752 Upstream 54bp
chr22 35719874 35719874 1 + C T LUSC 35719873 + 35719853 35719893 41 GCCCGCCCCGCCCATACTCTCCGGTGACACGCCCATAGCAC GCCCGCCCCGCCCATACTCTCTGGTGACACGCCCATAGCAC < 41bp 0.508904294526368 0.73772465197898 0.9208557 0.75813687 prediction 0.457640714905225 Functional Gain - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35719873 chr22:35719874 synonymous SNV 0.002 0 22 hm5C_associated_SNPs_115712 0 0 1 0 1 TOM1 chr22:35719907 5'GT 35719907 Upstream 34bp
chr16 20448675 20448675 1 + C T SKCM 20448674 + 20448654 20448694 41 GCTGTGGTCAGCAGCCCAGACCCCATCAGGGGAGAGGTAAC GCTGTGGTCAGCAGCCCAGACTCCATCAGGGGAGAGGTAAC < 41bp 0.602270245005815 0.831089628230645 0.027256608 0.9562254 prediction 0.457638766449661 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20448674 chr16:20448675 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_115713 0 0 0 0 2 ACSM5 chr16:20448590 3'AG 20448590 Downstream 86bp
chr16 20448675 20448675 1 + C T SKCM 20448674 + 20448654 20448694 41 GCTGTGGTCAGCAGCCCAGACCCCATCAGGGGAGAGGTAAC GCTGTGGTCAGCAGCCCAGACTCCATCAGGGGAGAGGTAAC < 41bp 0.602270245005815 0.831089628230645 0.027256608 0.9562254 prediction 0.457638766449661 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20448674 chr16:20448675 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_115713 0 0 0 0 2 ACSM5 chr16:20448689 5'GT 20448689 Upstream 15bp
chr17 21826177 21826177 1 + C A LUAD 21826173 + 21826153 21826193 41 GCAGGAGAGGAGCAGGCCCACGTCCAAGAAGATGGCTGTAT GCAGGAGAGGAGCAGGCCCACGTCAAAGAAGATGGCTGTAT < 41bp 0.365379930892409 0.728814542936891 0.37580138 0.27837417 prediction 0.457629085873782 Functional Gain - FAM27E5 ENSG00000178130 ncRNA_exonic Human lincRNA chr17:21826173 chr17:21826177 . . 0 25 hm5C_associated_SNPs_115715 0 0 0 0 1 FAM27E5 chr17:21826096 3'AG 21826096 Downstream 82bp
chr1 36748260 36748260 1 + C T SKCM 36748259 + 36748239 36748279 41 TTCATTTTCGAAGTCTCGGTCCCGAAGCCGATCTCTCTCTC TTCATTTTCGAAGTCTCGGTCTCGAAGCCGATCTCTCTCTC < 41bp 0.599679821304833 0.82848262919346 0.3669923 0.8967084 prediction 0.457605615777254 Functional Gain - THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36748259 chr1:36748260 synonymous SNV . 0 22 hm5C_associated_SNPs_115718 0 0 1 0 1 THRAP3 chr1:36748301 5'GT 36748301 Upstream 42bp
chr10 121203154 121203154 1 + C T OV 121203153 + 121203133 121203173 41 ATCGAGGGCCAGTCGCCGTTCCGCGGCCGCAAGGAGAAGGT ATCGAGGGCCAGTCGCCGTTCTGCGGCCGCAAGGAGAAGGT < 41bp 0.578222563853724 0.807019667222954 0.4127524 0.2945143 prediction 0.457594206738461 Functional Gain - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121203153 chr10:121203154 nonsynonymous SNV 0.333 4 22 hm5C_associated_SNPs_115720 0 0 1 0 1 GRK5 chr10:121203056 3'AG 121203056 Downstream 99bp
chr1 206658600 206658600 1 + C T COAD 206658599 + 206658579 206658619 41 GAGAGCCTGAGCAGCCTGAACCGGGAGCTGGTGAAGAGCCG GAGAGCCTGAGCAGCCTGAACTGGGAGCTGGTGAAGAGCCG < 41bp 0.553075738124005 0.781869456051924 0.8976724 0.8040468 prediction 0.457587435855838 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206658599 chr1:206658600 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_115721 0 0 0 0 2 IKBKE chr1:206658531 3'AG 206658531 Downstream 70bp
chr1 206658600 206658600 1 + C T COAD 206658599 + 206658579 206658619 41 GAGAGCCTGAGCAGCCTGAACCGGGAGCTGGTGAAGAGCCG GAGAGCCTGAGCAGCCTGAACTGGGAGCTGGTGAAGAGCCG < 41bp 0.553075738124005 0.781869456051924 0.8976724 0.8040468 prediction 0.457587435855838 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206658599 chr1:206658600 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_115721 0 0 0 0 2 IKBKE chr1:206658643 5'GT 206658643 Upstream 44bp
chr7 142637441 142637441 1 + C A LUAD 142637440 + 142637420 142637460 41 TCCTTTTCCCCTGTTCCAGACCAGAATCAAGAACAGTTCGA TCCTTTTCCCCTGTTCCAGACAAGAATCAAGAACAGTTCGA < 41bp 0.469789117198169 0.728786093437186 0.20261121 0.4203732 prediction 0.457572186874372 Functional Gain - C7orf34 ENSG00000165131 CDS Human protein_coding chr7:142637440 chr7:142637441 nonsynonymous SNV 0.492 2 22 hm5C_associated_SNPs_115723 0 0 0 0 1 C7orf34 chr7:142637439 3'AG 142637439 Downstream 3bp
chr4 88901214 88901214 1 + C T CESC 88901213 + 88901193 88901233 41 TGTAGCTTTACAACAAATACCCAGATGCTGTGGCCACATGG TGTAGCTTTACAACAAATACCTAGATGCTGTGGCCACATGG < 41bp 0.485968808492013 0.728784376300242 0.6264204 0.33322233 prediction 0.457568752600484 Functional Gain - SPP1 ENSG00000118785 CDS Human protein_coding chr4:88901213 chr4:88901214 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_115724 0 0 1 0 2 SPP1 chr4:88901198 3'AG 88901198 Downstream 17bp
chr4 88901214 88901214 1 + C T CESC 88901213 + 88901193 88901233 41 TGTAGCTTTACAACAAATACCCAGATGCTGTGGCCACATGG TGTAGCTTTACAACAAATACCTAGATGCTGTGGCCACATGG < 41bp 0.485968808492013 0.728784376300242 0.6264204 0.33322233 prediction 0.457568752600484 Functional Gain - SPP1 ENSG00000118785 CDS Human protein_coding chr4:88901213 chr4:88901214 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_115724 0 0 1 0 2 SPP1 chr4:88901278 5'GT 88901278 Upstream 65bp
chr16 29828601 29828601 1 + A G COAD 29828598 + 29828578 29828618 41 CAAAGGACTCCCTGATTGACCGGAGACGCACCCCAGGTACA CAAAGGACTCCCTGATTGACCGGGGACGCACCCCAGGTACA < 41bp 0.550033337180504 0.778813044635315 0.6469625 0.92500806 prediction 0.457559414909623 Functional Gain - PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828598 chr16:29828601 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_115725 0 0 1 0 2 PAGR1 chr16:29828531 3'AG 29828531 Downstream 71bp
chr16 29828601 29828601 1 + A G COAD 29828598 + 29828578 29828618 41 CAAAGGACTCCCTGATTGACCGGAGACGCACCCCAGGTACA CAAAGGACTCCCTGATTGACCGGGGACGCACCCCAGGTACA < 41bp 0.550033337180504 0.778813044635315 0.6469625 0.92500806 prediction 0.457559414909623 Functional Gain - PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828598 chr16:29828601 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_115725 0 0 1 0 2 PAGR1 chr16:29828613 5'GT 29828613 Upstream 13bp
chrX 79277847 79277847 1 + C A COAD 79277846 + 79277826 79277866 41 AGCAAAAGAAAACTCCAAGACCCAATACAGGCGGAGCAGCC AGCAAAAGAAAACTCCAAGACACAATACAGGCGGAGCAGCC < 41bp 0.572176982790668 0.800956230232282 0.53969955 0.33402735 prediction 0.457558494883227 Functional Gain - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79277846 chrX:79277847 nonsynonymous SNV 0.091 1 22 hm5C_associated_SNPs_115726 0 0 0 0 2 TBX22 chrX:79277767 3'AG 79277767 Downstream 81bp
chrX 79277847 79277847 1 + C A COAD 79277846 + 79277826 79277866 41 AGCAAAAGAAAACTCCAAGACCCAATACAGGCGGAGCAGCC AGCAAAAGAAAACTCCAAGACACAATACAGGCGGAGCAGCC < 41bp 0.572176982790668 0.800956230232282 0.53969955 0.33402735 prediction 0.457558494883227 Functional Gain - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79277846 chrX:79277847 nonsynonymous SNV 0.091 1 22 hm5C_associated_SNPs_115726 0 0 0 0 2 TBX22 chrX:79277943 5'GT 79277943 Upstream 97bp
chr21 47349908 47349908 1 + C A GBM 47349907 + 47349887 47349927 41 ACAGACCAACCCCGCTTTCCCCGGTACGTACCCAGCCCTTT ACAGACCAACCCCGCTTTCCCAGGTACGTACCCAGCCCTTT < 41bp 0.46803757498927 0.728775691591695 0.2775132 0.916691 prediction 0.45755138318339 Functional Gain - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47349907 chr21:47349908 synonymous SNV . 0 22 hm5C_associated_SNPs_115729 0 0 0 0 3 PCBP3 chr21:47349831 3'AG 47349831 Downstream 78bp
chr21 47349908 47349908 1 + C A GBM 47349907 + 47349887 47349927 41 ACAGACCAACCCCGCTTTCCCCGGTACGTACCCAGCCCTTT ACAGACCAACCCCGCTTTCCCAGGTACGTACCCAGCCCTTT < 41bp 0.46803757498927 0.728775691591695 0.2775132 0.916691 prediction 0.45755138318339 Functional Gain - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47349907 chr21:47349908 synonymous SNV . 0 22 hm5C_associated_SNPs_115729 0 0 0 0 3 PCBP3 chr21:47349834 3'AG 47349834 Downstream 75bp
chr21 47349908 47349908 1 + C A GBM 47349907 + 47349887 47349927 41 ACAGACCAACCCCGCTTTCCCCGGTACGTACCCAGCCCTTT ACAGACCAACCCCGCTTTCCCAGGTACGTACCCAGCCCTTT < 41bp 0.46803757498927 0.728775691591695 0.2775132 0.916691 prediction 0.45755138318339 Functional Gain - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47349907 chr21:47349908 synonymous SNV . 0 22 hm5C_associated_SNPs_115729 0 0 0 0 3 PCBP3 chr21:47349909 5'GT 47349909 Upstream 2bp
chr22 29445263 29445263 1 + C A UCEC 29445259 + 29445239 29445279 41 GTCGGCAGCAGAGGGTGACCCTGCCGGTGCATTACCCCGGC GTCGGCAGCAGAGGGTGACCCTGCAGGTGCATTACCCCGGC < 41bp 0.7068309469123 0.935602092564856 0.5196567 0.5225903 prediction 0.457542291305112 Functional Gain - ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29445259 chr22:29445263 nonsynonymous SNV 0.983 4 25 hm5C_associated_SNPs_115730 0 0 1 0 1 ZNRF3 chr22:29445185 3'AG 29445185 Downstream 79bp
chr9 33351709 33351709 1 + C A rs75231196 33351708 + 33351688 33351728 41 GCAAGCAGCCCTGCACCACCCCCAGAGCTGACTGTGGTCAC GCAAGCAGCCCTGCACCACCCACAGAGCTGACTGTGGTCAC < 41bp 0.46789580530614 0.728768506275333 0.1563721 0.16049916 prediction 0.457537012550665 Functional Gain - NFX1 ENSG00000086102 CDS Human protein_coding chr9:33351708 chr9:33351709 nonsynonymous SNV 0.800 1 22 hm5C_associated_SNPs_115731 0 0 1 0 1 NFX1 chr9:33351788 5'GT 33351788 Upstream 80bp
chr17 72739298 72739298 1 + C T UCEC 72739297 + 72739277 72739317 41 ACCGCTGGGCAGGAACGGTTCCGAAGCGTCACCCATGCTTA ACCGCTGGGCAGGAACGGTTCTGAAGCGTCACCCATGCTTA < 41bp 0.576263586048889 0.805031446044249 0.31921476 0.37147874 prediction 0.457535719990718 Functional Gain - RAB37 ENSG00000172794 CDS Human protein_coding chr17:72739297 chr17:72739298 stopgain 0.991 1 22 hm5C_associated_SNPs_115732 0 0 0 0 1 RAB37 chr17:72739268 3'AG 72739268 Downstream 31bp
chr9 99699601 99699601 1 + C T UCEC 99699600 + 99699580 99699620 41 AAAAGGGCAAAGTGGAGCAGCCGCAGGAAGAGGACGGGATG AAAAGGGCAAAGTGGAGCAGCTGCAGGAAGAGGACGGGATG < 41bp 0.483338124051274 0.728760701649842 0.41178364 0.7009331 prediction 0.457521403299684 Functional Gain - NUTM2G ENSG00000188152 CDS Human protein_coding chr9:99699600 chr9:99699601 nonsynonymous SNV 0.008 1 22 hm5C_associated_SNPs_115735 0 0 0 0 1 NUTM2G chr9:99699686 5'GT 99699686 Upstream 86bp
chr1 149376722 149376722 1 + T A HNSC 149376718 + 149376698 149376738 41 ATGCATCTGTGACATCCCCACTCCTGGGGGGAATCTGGTCA ATGCATCTGTGACATCCCCACTCCAGGGGGGAATCTGGTCA < 41bp 0.412300840957798 0.72875822774148 0.08507788 0.9227507 prediction 0.457516455482959 Functional Gain - FCGR1CP ENSG00000253193 ncRNA_exonic Human other chr1:149376718 chr1:149376722 . . 0 25 hm5C_associated_SNPs_115737 0 0 0 0 1 FCGR1CP chr1:149376674 3'AG 149376674 Downstream 49bp
chr12 124086796 124086796 1 + C A COAD 124086795 + 124086775 124086815 41 TGGGCTTCCCGTACATGACGCCGGTGCAGGTATCGGTTCCC TGGGCTTCCCGTACATGACGCAGGTGCAGGTATCGGTTCCC < 41bp 0.47851354738572 0.728751032574644 0.580308 0.81841046 prediction 0.457502065149288 Functional Gain - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124086795 chr12:124086796 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_115738 0 0 1 0 1 DDX55 chr12:124086803 5'GT 124086803 Upstream 8bp
chr14 100166376 100166376 1 + C T rs139245529 100166375 + 100166355 100166395 41 CTTCGGCCAAGGCTTGGTGTCCGAATGCAACTATGAGCGCT CTTCGGCCAAGGCTTGGTGTCTGAATGCAACTATGAGCGCT < 41bp 0.565327746411417 0.794076756043496 0.20950165 0.12796727 prediction 0.457498019264157 Functional Gain - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100166375 chr14:100166376 synonymous SNV . 0 22 hm5C_associated_SNPs_115739 0 0 0 0 2 CYP46A1 chr14:100166352 3'AG 100166352 Downstream 25bp
chr14 100166376 100166376 1 + C T rs139245529 100166375 + 100166355 100166395 41 CTTCGGCCAAGGCTTGGTGTCCGAATGCAACTATGAGCGCT CTTCGGCCAAGGCTTGGTGTCTGAATGCAACTATGAGCGCT < 41bp 0.565327746411417 0.794076756043496 0.20950165 0.12796727 prediction 0.457498019264157 Functional Gain - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100166375 chr14:100166376 synonymous SNV . 0 22 hm5C_associated_SNPs_115739 0 0 0 0 2 CYP46A1 chr14:100166438 5'GT 100166438 Upstream 63bp
chr5 72794525 72794525 1 + C G rs375502008 72794521 + 72794501 72794541 41 GACAGGCGCACCCGCTCAGGCTGACTCTCGGGGGCGAGGTC GACAGGCGCACCCGCTCAGGCTGAGTCTCGGGGGCGAGGTC < 41bp 0.61459675405148 0.843344113430479 0.07627389 0.083298445 prediction 0.457494718757999 Functional Gain - BTF3 ENSG00000145741 CDS Human protein_coding chr5:72794521 chr5:72794525 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_115740 0 0 1 0 1 BTF3 chr5:72794624 5'GT 72794624 Upstream 100bp
chrX 153663807 153663807 1 + C T UCEC 153663806 + 153663786 153663826 41 AAGGGTAGTCTCCTCGTGGCCCGCACGCAGCCCTCTCCCTG AAGGGTAGTCTCCTCGTGGCCTGCACGCAGCCCTCTCCCTG < 41bp 0.531757255787021 0.760502572612894 0.077174336 0.091478616 prediction 0.457490633651746 Functional Gain - ATP6AP1 ENSG00000071553 CDS Human protein_coding chrX:153663806 chrX:153663807 nonsynonymous SNV 0.004 1 22 hm5C_associated_SNPs_115741 0 0 1 0 1 ATP6AP1 chrX:153663851 5'GT 153663851 Upstream 45bp
chr5 170236616 170236616 1 + C T rs79997355 170236615 + 170236595 170236635 41 ACCACACTGATGATCGGGTCCCGCACTTCTCTTCCCAACAC ACCACACTGATGATCGGGTCCTGCACTTCTCTTCCCAACAC < 41bp 0.583282426079011 0.812027064190305 0.023334503 0.018084079 prediction 0.457489276222588 Functional Gain - GABRP ENSG00000094755 CDS Human protein_coding chr5:170236615 chr5:170236616 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_115742 0 0 0 0 1 GABRP chr5:170236572 3'AG 170236572 Downstream 45bp
chr19 40009417 40009417 1 + C T THYM 40009416 + 40009396 40009436 41 AGAGCCTGGAGCAGCAATTTCCGAATCACCTACTCTTTGTA AGAGCCTGGAGCAGCAATTTCTGAATCACCTACTCTTTGTA < 41bp 0.470236740912426 0.728741430474402 0.26345223 0.17848974 prediction 0.457482860948804 Functional Gain - SELENOV ENSG00000186838 CDS Human protein_coding chr19:40009416 chr19:40009417 nonsynonymous SNV 0.247 3 22 hm5C_associated_SNPs_115746 0 0 0 0 2 SELENOV chr19:40009380 3'AG 40009380 Downstream 38bp
chr19 40009417 40009417 1 + C T THYM 40009416 + 40009396 40009436 41 AGAGCCTGGAGCAGCAATTTCCGAATCACCTACTCTTTGTA AGAGCCTGGAGCAGCAATTTCTGAATCACCTACTCTTTGTA < 41bp 0.470236740912426 0.728741430474402 0.26345223 0.17848974 prediction 0.457482860948804 Functional Gain - SELENOV ENSG00000186838 CDS Human protein_coding chr19:40009416 chr19:40009417 nonsynonymous SNV 0.247 3 22 hm5C_associated_SNPs_115746 0 0 0 0 2 SELENOV chr19:40009433 5'GT 40009433 Upstream 17bp
chr11 125778309 125778309 1 + A G LUAD 125778306 + 125778286 125778326 41 TTTTCTACAGACCCCAGAACCTCATAGCACAGAGCCAGTCT TTTTCTACAGACCCCAGAACCTCGTAGCACAGAGCCAGTCT < 41bp 0.490407145050093 0.728737013738164 0.03990242 0.12622157 prediction 0.457474027476328 Functional Gain - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125778306 chr11:125778309 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_115748 0 0 0 0 2 DDX25 chr11:125778296 3'AG 125778296 Downstream 14bp
chr11 125778309 125778309 1 + A G LUAD 125778306 + 125778286 125778326 41 TTTTCTACAGACCCCAGAACCTCATAGCACAGAGCCAGTCT TTTTCTACAGACCCCAGAACCTCGTAGCACAGAGCCAGTCT < 41bp 0.490407145050093 0.728737013738164 0.03990242 0.12622157 prediction 0.457474027476328 Functional Gain - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125778306 chr11:125778309 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_115748 0 0 0 0 2 DDX25 chr11:125778398 5'GT 125778398 Upstream 90bp
chr17 9541999 9541999 1 + C T BLCA 9541998 + 9541978 9542018 41 TGCTATCACCCTGAGGAGTTCCAGATCATCACCAGCGGAAC TGCTATCACCCTGAGGAGTTCTAGATCATCACCAGCGGAAC < 41bp 0.589525089935362 0.818261544211908 0.091426075 0.049330622 prediction 0.457472908553092 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9541998 chr17:9541999 stopgain 1.000 1 22 hm5C_associated_SNPs_115749 0 0 0 0 2 CFAP52 chr17:9541926 3'AG 9541926 Downstream 74bp
chr17 9541999 9541999 1 + C T BLCA 9541998 + 9541978 9542018 41 TGCTATCACCCTGAGGAGTTCCAGATCATCACCAGCGGAAC TGCTATCACCCTGAGGAGTTCTAGATCATCACCAGCGGAAC < 41bp 0.589525089935362 0.818261544211908 0.091426075 0.049330622 prediction 0.457472908553092 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9541998 chr17:9541999 stopgain 1.000 1 22 hm5C_associated_SNPs_115749 0 0 0 0 2 CFAP52 chr17:9542028 5'GT 9542028 Upstream 30bp
chr16 88772907 88772907 1 + C G rs533608663 88772906 + 88772886 88772926 41 GGCGCGCCCTCGCGCTGTCGCCGCCACAGTCTGCGACGGGA GGCGCGCCCTCGCGCTGTCGCGGCCACAGTCTGCGACGGGA < 41bp 0.433828157566237 0.728728042655076 0.80065066 0.9264526 prediction 0.457456085310151 Functional Gain - CTU2 ENSG00000174177 UTR5 Human protein_coding chr16:88772906 chr16:88772907 . . 0 22 hm5C_associated_SNPs_115752 0 0 1 0 1 CTU2 chr16:88773006 5'GT 88773006 Upstream 100bp
chr5 32780843 32780843 1 + T A LUAD 32780839 + 32780819 32780859 41 GTCCTGTAGGTATCGCCGGGCAGGTGTCCATAGATGCCAAC GTCCTGTAGGTATCGCCGGGCAGGAGTCCATAGATGCCAAC < 41bp 0.41809337478817 0.728717966489636 0.47546685 0.48211944 prediction 0.457435932979272 Functional Gain - NPR3 ENSG00000113389 CDS Human protein_coding chr5:32780839 chr5:32780843 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_115758 0 0 1 0 2 NPR3 chr5:32780828 3'AG 32780828 Downstream 16bp
chr5 32780843 32780843 1 + T A LUAD 32780839 + 32780819 32780859 41 GTCCTGTAGGTATCGCCGGGCAGGTGTCCATAGATGCCAAC GTCCTGTAGGTATCGCCGGGCAGGAGTCCATAGATGCCAAC < 41bp 0.41809337478817 0.728717966489636 0.47546685 0.48211944 prediction 0.457435932979272 Functional Gain - NPR3 ENSG00000113389 CDS Human protein_coding chr5:32780839 chr5:32780843 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_115758 0 0 1 0 2 NPR3 chr5:32780922 5'GT 32780922 Upstream 80bp
chr3 195456586 195456586 1 + A G BLCA 195456583 + 195456563 195456603 41 CCGGAAGACCTCACTGACCCCAGAGTGGCAGAAAGGCTGAT CCGGAAGACCTCACTGACCCCAGGGTGGCAGAAAGGCTGAT < 41bp 0.544489733855821 0.773205724706926 0.25439805 0.6209251 prediction 0.457431981702209 Functional Gain - MUC20 ENSG00000176945 CDS Human protein_coding chr3:195456583 chr3:195456586 synonymous SNV . 0 24 hm5C_associated_SNPs_115759 0 0 0 0 2 MUC20 chr3:195456519 3'AG 195456519 Downstream 68bp
chr3 195456586 195456586 1 + A G BLCA 195456583 + 195456563 195456603 41 CCGGAAGACCTCACTGACCCCAGAGTGGCAGAAAGGCTGAT CCGGAAGACCTCACTGACCCCAGGGTGGCAGAAAGGCTGAT < 41bp 0.544489733855821 0.773205724706926 0.25439805 0.6209251 prediction 0.457431981702209 Functional Gain - MUC20 ENSG00000176945 CDS Human protein_coding chr3:195456583 chr3:195456586 synonymous SNV . 0 24 hm5C_associated_SNPs_115759 0 0 0 0 2 MUC20 chr3:195456610 5'GT 195456610 Upstream 25bp
chr19 13186433 13186433 1 + C G BRCA 13186432 + 13186412 13186452 41 CTATCCCGGGACAGGCCGTTCCCCAGCAGCTGGCAGCAGCC CTATCCCGGGACAGGCCGTTCGCCAGCAGCTGGCAGCAGCC < 41bp 0.401161477571391 0.728713753513304 0.22965324 0.53276336 prediction 0.457427507026607 Functional Gain - NFIX ENSG00000008441 CDS Human protein_coding chr19:13186432 chr19:13186433 synonymous SNV . 0 22 hm5C_associated_SNPs_115760 0 0 0 0 2 NFIX chr19:13186349 3'AG 13186349 Downstream 85bp
chr19 13186433 13186433 1 + C G BRCA 13186432 + 13186412 13186452 41 CTATCCCGGGACAGGCCGTTCCCCAGCAGCTGGCAGCAGCC CTATCCCGGGACAGGCCGTTCGCCAGCAGCTGGCAGCAGCC < 41bp 0.401161477571391 0.728713753513304 0.22965324 0.53276336 prediction 0.457427507026607 Functional Gain - NFIX ENSG00000008441 CDS Human protein_coding chr19:13186432 chr19:13186433 synonymous SNV . 0 22 hm5C_associated_SNPs_115760 0 0 0 0 2 NFIX chr19:13186485 5'GT 13186485 Upstream 53bp
chr17 12044530 12044530 1 + C G BRCA 12044529 + 12044509 12044549 41 GCATGCTATGTTTGTAAAATCCTGGATCAAATGCCAGCTAC GCATGCTATGTTTGTAAAATCGTGGATCAAATGCCAGCTAC < 41bp 0.420795632973691 0.728705257885003 0.25402376 0.5967789 prediction 0.457410515770006 Functional Gain - MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12044529 chr17:12044530 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_115763 0 0 1 0 1 MAP2K4 chr17:12044464 3'AG 12044464 Downstream 67bp
chr2 132290881 132290881 1 + A G LUAD 132290878 + 132290858 132290898 41 GCGGAGCGTGCCATCCTGCCCGCACTGAAGCAGACCCCGAA GCGGAGCGTGCCATCCTGCCCGCGCTGAAGCAGACCCCGAA < 41bp 0.537548236390864 0.766253045649382 0.056668013 0.2270121 prediction 0.457409618517035 Functional Gain - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132290878 chr2:132290881 synonymous SNV . 0 24 hm5C_associated_SNPs_115764 0 0 0 0 1 CCDC74A chr2:132290842 3'AG 132290842 Downstream 40bp
chr4 160268040 160268040 1 + C T UCEC 160268039 + 160268019 160268059 41 AAGCTCAGTCCCTGCCACAGCCCCAGCAGCAGCCACCACCA AAGCTCAGTCCCTGCCACAGCTCCAGCAGCAGCCACCACCA < 41bp 0.603005449774124 0.831710172000511 0.06030637 0.62377775 prediction 0.457409444452775 Functional Gain - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160268039 chr4:160268040 nonsynonymous SNV 0.205 0 22 hm5C_associated_SNPs_115765 0 0 0 0 1 RAPGEF2 chr4:160267941 3'AG 160267941 Downstream 100bp
chr1 32502560 32502560 1 + T G SKCM 32502558 + 32502538 32502578 41 CAATTTCTAGAGCTGTCCTACTTGAATGGAGTACCTGAACC CAATTTCTAGAGCTGTCCTACTGGAATGGAGTACCTGAACC < 41bp 0.65972849155825 0.888429853389468 0.30150044 0.3325547 prediction 0.457402723662435 Functional Gain - KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502558 chr1:32502560 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_115766 0 0 1 0 2 KHDRBS1 chr1:32502511 3'AG 32502511 Downstream 50bp
chr1 32502560 32502560 1 + T G SKCM 32502558 + 32502538 32502578 41 CAATTTCTAGAGCTGTCCTACTTGAATGGAGTACCTGAACC CAATTTCTAGAGCTGTCCTACTGGAATGGAGTACCTGAACC < 41bp 0.65972849155825 0.888429853389468 0.30150044 0.3325547 prediction 0.457402723662435 Functional Gain - KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502558 chr1:32502560 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_115766 0 0 1 0 2 KHDRBS1 chr1:32502644 5'GT 32502644 Upstream 85bp
chr19 35510304 35510304 1 + C T rs73038384 35510303 + 35510283 35510323 41 CTGTCCCTGCAGACGCTGTTCCGGCGCGGCCCCCAGGCCGG CTGTCCCTGCAGACGCTGTTCTGGCGCGGCCCCCAGGCCGG < 41bp 0.53061993816557 0.759321291224079 0.91213334 0.7805879 prediction 0.457402706117017 Functional Gain - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35510303 chr19:35510304 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_115767 0 0 1 0 1 GRAMD1A chr19:35510295 3'AG 35510295 Downstream 10bp
chr12 113867083 113867083 1 + C T LUSC 113867082 + 113867062 113867102 41 GAGGCTGCAGGGGGAGGGGGCCGAGGTTCAGCTGACTGGAA GAGGCTGCAGGGGGAGGGGGCTGAGGTTCAGCTGACTGGAA < 41bp 0.498747642970643 0.728700666404252 0.891732 0.88679457 prediction 0.457401332808504 Functional Gain - SDSL ENSG00000139410 CDS Human protein_coding chr12:113867082 chr12:113867083 synonymous SNV . 0 22 hm5C_associated_SNPs_115768 0 0 1 0 1 SDSL chr12:113867104 5'GT 113867104 Upstream 22bp
chr5 128797410 128797410 1 + C A BRCA 128797409 + 128797389 128797429 41 CCGGAGCTGTGCTGCGGCACCCTGGCTCGCTGGCTTCTTTC CCGGAGCTGTGCTGCGGCACCATGGCTCGCTGGCTTCTTTC < 41bp 0.473351974477466 0.728700101172108 0.38395786 0.3862961 prediction 0.457400202344216 Functional Gain - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:128797409 chr5:128797410 nonsynonymous SNV 0.582 2 22 hm5C_associated_SNPs_115769 0 0 0 1 1 ADAMTS19 chr5:128797450 5'GT 128797450 Upstream 41bp
chr5 145638073 145638073 1 + C A UCEC 145638072 + 145638052 145638092 41 TTCGATTAATAGCAACATAACCAGAGTAGTTCTTGAACCAG TTCGATTAATAGCAACATAACAAGAGTAGTTCTTGAACCAG < 41bp 0.553500062192471 0.782199599085235 0.4123364 0.4722108 prediction 0.457399073785526 Functional Gain - RBM27 ENSG00000091009 CDS Human protein_coding chr5:145638072 chr5:145638073 synonymous SNV . 0 22 hm5C_associated_SNPs_115770 0 0 1 0 2 RBM27 chr5:145638012 3'AG 145638012 Downstream 62bp
chr5 145638073 145638073 1 + C A UCEC 145638072 + 145638052 145638092 41 TTCGATTAATAGCAACATAACCAGAGTAGTTCTTGAACCAG TTCGATTAATAGCAACATAACAAGAGTAGTTCTTGAACCAG < 41bp 0.553500062192471 0.782199599085235 0.4123364 0.4722108 prediction 0.457399073785526 Functional Gain - RBM27 ENSG00000091009 CDS Human protein_coding chr5:145638072 chr5:145638073 synonymous SNV . 0 22 hm5C_associated_SNPs_115770 0 0 1 0 2 RBM27 chr5:145638156 5'GT 145638156 Upstream 84bp
chr15 68119422 68119422 1 + C T LUSC 68119421 + 68119401 68119441 41 CGGTTTTAGGCGCGGGCGAGCCAAAGGGCGGTCCTGGCACT CGGTTTTAGGCGCGGGCGAGCTAAAGGGCGGTCCTGGCACT < 41bp 0.543650554599463 0.772335658919357 0.8552235 0.79932564 prediction 0.457370208639788 Functional Gain - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68119421 chr15:68119422 nonsynonymous SNV 0.438 2 22 hm5C_associated_SNPs_115774 0 0 0 0 1 SKOR1 chr15:68119430 5'GT 68119430 Upstream 9bp
chr6 116752177 116752177 1 + T C UCEC 116752174 + 116752154 116752194 41 TCTGACCATCATGGAGAAATCTCTGGTCTTGCTCAGGGAGG TCTGACCATCATGGAGAAATCTCCGGTCTTGCTCAGGGAGG < 41bp 0.500560295160517 0.729244865088932 0.21276113 0.475004 prediction 0.45736913985683 Functional Gain - DSE ENSG00000111817 CDS Human protein_coding chr6:116752174 chr6:116752177 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_115775 0 0 1 0 1 DSE chr6:116752117 3'AG 116752117 Downstream 61bp
chr4 951626 951626 1 + C A MESO 951625 + 951605 951645 41 TTCTCAGCGAAGACAACGTCCCGGACCCCAAGGATGTGAAG TTCTCAGCGAAGACAACGTCCAGGACCCCAAGGATGTGAAG < 41bp 0.462442349820365 0.728676548826487 0.18090987 0.30672836 prediction 0.457353097652974 Functional Gain - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:951625 chr4:951626 nonsynonymous SNV 0.366 4 22 hm5C_associated_SNPs_115777 0 0 1 0 1 TMEM175 chr4:951612 3'AG 951612 Downstream 15bp
chr3 37536030 37536030 1 + C T LUAD 37536029 + 37536009 37536049 41 GGAGAGGAACACGGCTCCTGCCAGGCTGGGATAGCGGGCTT GGAGAGGAACACGGCTCCTGCTAGGCTGGGATAGCGGGCTT < 41bp 0.515489383109165 0.744163809508981 0.2953285 0.32596874 prediction 0.457348852799631 Functional Gain - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37536029 chr3:37536030 stopgain 1.000 1 22 hm5C_associated_SNPs_115778 0 0 0 0 1 ITGA9 chr3:37536059 5'GT 37536059 Upstream 30bp
chr19 52817449 52817449 1 + C A rs201346974 52817445 + 52817425 52817465 41 ACGTGGCCATAGAATTCTCTCAGGCGGAGTGGAAATGCCTG ACGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTG < 41bp 0.696106476006791 0.924780787475235 0.71821827 0.90708095 prediction 0.457348622936888 Functional Gain - ZNF480 ENSG00000198464 CDS Human protein_coding chr19:52817445 chr19:52817449 nonsynonymous SNV 0.386 0 25 hm5C_associated_SNPs_115779 0 0 1 0 2 ZNF480 chr19:52817406 3'AG 52817406 Downstream 44bp
chr19 52817449 52817449 1 + C A rs201346974 52817445 + 52817425 52817465 41 ACGTGGCCATAGAATTCTCTCAGGCGGAGTGGAAATGCCTG ACGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTG < 41bp 0.696106476006791 0.924780787475235 0.71821827 0.90708095 prediction 0.457348622936888 Functional Gain - ZNF480 ENSG00000198464 CDS Human protein_coding chr19:52817445 chr19:52817449 nonsynonymous SNV 0.386 0 25 hm5C_associated_SNPs_115779 0 0 1 0 2 ZNF480 chr19:52817532 5'GT 52817532 Upstream 84bp
chrX 106888486 106888486 1 + C T STAD 106888485 + 106888465 106888505 41 AAGAAGGCCAATGAAGTGGACCGCATGGTGCTTGTGGGAGA AAGAAGGCCAATGAAGTGGACTGCATGGTGCTTGTGGGAGA < 41bp 0.574054778684685 0.802726001311496 0.087979734 0.27082264 prediction 0.457342445253623 Functional Gain - PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106888485 chrX:106888486 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_115781 0 0 1 0 1 PRPS1 chrX:106888580 5'GT 106888580 Upstream 95bp
chr1 173455410 173455410 1 + C T SKCM 173455409 + 173455389 173455429 41 TACAGGTGTTTGTTTTTGGTCCTGATAAGAAGCTGAAGCTG TACAGGTGTTTGTTTTTGGTCTTGATAAGAAGCTGAAGCTG < 41bp 0.554986234772602 0.783652846892733 0.14448759 0.1945354 prediction 0.457333224240263 Functional Gain - PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173455409 chr1:173455410 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_115782 0 0 1 0 1 PRDX6 chr1:173455394 3'AG 173455394 Downstream 17bp
chr15 58476258 58476258 1 + C T UCEC 58476257 + 58476237 58476277 41 TTGTCATTGAAATCCACCATCCAGAGCCTGACTCAGTCTTT TTGTCATTGAAATCCACCATCTAGAGCCTGACTCAGTCTTT < 41bp 0.49236726217587 0.728656996631366 0.24437737 0.14089957 prediction 0.457313993262731 Functional Gain - AQP9 ENSG00000103569 CDS Human protein_coding chr15:58476257 chr15:58476258 nonsynonymous SNV 0.449 2 22 hm5C_associated_SNPs_115788 0 0 0 0 1 AQP9 chr15:58476160 3'AG 58476160 Downstream 99bp
chr13 114164666 114164666 1 + C T SKCM 114164665 + 114164645 114164685 41 CACGCAGAGCGTCTTCATTTCCACGTGTCTGTCCTTGTCAA CACGCAGAGCGTCTTCATTTCTACGTGTCTGTCCTTGTCAA < 41bp 0.461405239882244 0.728643974399916 0.38684124 0.09165758 prediction 0.457287948799833 Functional Gain - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114164665 chr13:114164666 synonymous SNV . 0 22 hm5C_associated_SNPs_115790 0 0 1 0 1 TMCO3 chr13:114164739 5'GT 114164739 Upstream 74bp
chr3 129267248 129267248 1 + C G rs142251271 129267244 + 129267224 129267264 41 GACTTGCGTCACAGCAGGACCAGGCGGCTAAGCAGGGAGAA GACTTGCGTCACAGCAGGACCAGGGGGCTAAGCAGGGAGAA < 41bp 0.436024252689405 0.728620964537203 0.8382576 0.88826036 prediction 0.457241929074406 Functional Gain - H1FOO ENSG00000178804 UTR5 Human protein_coding chr3:129267244 chr3:129267248 . . 0 25 hm5C_associated_SNPs_115795 0 0 0 0 1 H1FOO chr3:129267319 5'GT 129267319 Upstream 72bp
chr5 176860999 176860999 1 + A G LUSC 176860996 + 176860976 176861016 41 ACGGGGGCGACCTCAAGTTCCACATCTACCACATGGGCCAG ACGGGGGCGACCTCAAGTTCCACGTCTACCACATGGGCCAG < 41bp 0.480329112194101 0.728609718399676 0.028795838 0.093604654 prediction 0.457219436799351 Functional Gain - GRK6 ENSG00000198055 CDS Human protein_coding chr5:176860996 chr5:176860999 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_115796 0 0 1 0 1 GRK6 chr5:176860915 3'AG 176860915 Downstream 85bp
chr2 44457626 44457626 1 + T C OV 44457624 + 44457604 44457644 41 TCAGGCAAATGAGAATTAATCATAGGGGAAACTACCGACAA TCAGGCAAATGAGAATTAATCACAGGGGAAACTACCGACAA < 41bp 0.554721619811561 0.783326029886316 0.92084265 0.91955173 prediction 0.457208820149511 Functional Gain - PPM1B ENSG00000138032 CDS Human protein_coding chr2:44457624 chr2:44457626 synonymous SNV . 0 23 hm5C_associated_SNPs_115801 0 0 1 0 1 PPM1B chr2:44457552 3'AG 44457552 Downstream 75bp
chr20 2840447 2840447 1 + C T rs201176727 2840446 + 2840426 2840466 41 GCTGCTGCACCCTATGGGGGCCCCATTGGTATGTTGCCCCT GCTGCTGCACCCTATGGGGGCTCCATTGGTATGTTGCCCCT < 41bp 0.579511929769137 0.808115653518377 0.16211462 0.8376785 prediction 0.457207447498481 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2840446 chr20:2840447 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_115802 0 0 1 3 2 VPS16 chr20:2840365 3'AG 2840365 Downstream 83bp
chr20 2840447 2840447 1 + C T rs201176727 2840446 + 2840426 2840466 41 GCTGCTGCACCCTATGGGGGCCCCATTGGTATGTTGCCCCT GCTGCTGCACCCTATGGGGGCTCCATTGGTATGTTGCCCCT < 41bp 0.579511929769137 0.808115653518377 0.16211462 0.8376785 prediction 0.457207447498481 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2840446 chr20:2840447 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_115802 0 0 1 3 2 VPS16 chr20:2840453 5'GT 2840453 Upstream 7bp
chr20 2729205 2729205 1 + A G UCEC 2729202 + 2729182 2729222 41 CACACTGTTTCAGGTTCTTCCTCAAGTTCTTCCTCAAATGC CACACTGTTTCAGGTTCTTCCTCGAGTTCTTCCTCAAATGC < 41bp 0.546151337524415 0.774751700737896 0.042143494 0.1874747 prediction 0.457200726426962 Functional Gain - EBF4 ENSG00000088881 CDS Human protein_coding chr20:2729202 chr20:2729205 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_115803 0 0 0 0 2 EBF4 chr20:2729195 3'AG 2729195 Downstream 11bp
chr20 2729205 2729205 1 + A G UCEC 2729202 + 2729182 2729222 41 CACACTGTTTCAGGTTCTTCCTCAAGTTCTTCCTCAAATGC CACACTGTTTCAGGTTCTTCCTCGAGTTCTTCCTCAAATGC < 41bp 0.546151337524415 0.774751700737896 0.042143494 0.1874747 prediction 0.457200726426962 Functional Gain - EBF4 ENSG00000088881 CDS Human protein_coding chr20:2729202 chr20:2729205 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_115803 0 0 0 0 2 EBF4 chr20:2729276 5'GT 2729276 Upstream 72bp
chr14 105878077 105878077 1 + C A UCEC 105878076 + 105878056 105878096 41 TCCCCACCCGCTGAGGTCCACCGAGTCCACCAACGCCTTCC TCCCCACCCGCTGAGGTCCACAGAGTCCACCAACGCCTTCC < 41bp 0.583972251102888 0.812572556185529 0.47074333 0.85603607 prediction 0.457200610165281 Functional Gain - TEX22 ENSG00000226174 CDS Human protein_coding chr14:105878076 chr14:105878077 synonymous SNV . 0 22 hm5C_associated_SNPs_115804 0 0 0 0 1 TEX22 chr14:105877997 3'AG 105877997 Downstream 81bp
chr16 5041989 5041989 1 + C T SKCM 5041988 + 5041968 5042008 41 TCCCTGGAGGCCCACGGGCCCCGTAGCACCCTGGGGCCCGC TCCCTGGAGGCCCACGGGCCCTGTAGCACCCTGGGGCCCGC < 41bp 0.48660057073683 0.72859735197119 0.07316396 0.09326932 prediction 0.457194703942381 Functional Gain - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5041988 chr16:5041989 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_115805 0 0 0 0 1 SEC14L5 chr16:5042031 5'GT 5042031 Upstream 43bp
chr1 18691813 18691813 1 + C T UCEC 18691812 + 18691792 18691832 41 CTACAGGACAGCAGGCCCTTCCGCAGCCTTCTGCACCGTGA CTACAGGACAGCAGGCCCTTCTGCAGCCTTCTGCACCGTGA < 41bp 0.591369405274266 0.819966007560817 0.62634635 0.34486097 prediction 0.457193204573103 Functional Gain - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18691812 chr1:18691813 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_115806 0 0 0 0 1 IGSF21 chr1:18691717 3'AG 18691717 Downstream 97bp
chr10 6266162 6266162 1 + C T STAD 6266161 + 6266141 6266181 41 GTGGAGTCCGTCTGCACACACCGGGAGAGGTCAGAGGTGAG GTGGAGTCCGTCTGCACACACTGGGAGAGGTCAGAGGTGAG < 41bp 0.538097364700269 0.766691995613218 0.8190012 0.3996917 prediction 0.457189261825896 Functional Gain - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6266161 chr10:6266162 nonsynonymous SNV 0.746 4 22 hm5C_associated_SNPs_115807 0 0 1 0 1 PFKFB3 chr10:6266176 5'GT 6266176 Upstream 15bp
chr12 113532976 113532976 1 + C T UCEC 113532975 + 113532955 113532995 41 TTCCCTGATACCCAGACCATCCGCATCGTCTATGACATCCC TTCCCTGATACCCAGACCATCTGCATCGTCTATGACATCCC < 41bp 0.459155458420792 0.728594414673275 0.00477916 0.016749352 prediction 0.45718882934655 Functional Gain - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113532975 chr12:113532976 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_115809 0 0 0 0 1 DTX1 chr12:113533008 5'GT 113533008 Upstream 33bp
chr1 44437122 44437122 1 + C T SKCM 44437121 + 44437101 44437141 41 TAGTCTCCAGCCCAGCTTTTCCCCAACCAGTGGGTTCCCTG TAGTCTCCAGCCCAGCTTTTCTCCAACCAGTGGGTTCCCTG < 41bp 0.461509616901475 0.728589144404255 0.08510071 0.95194286 prediction 0.45717828880851 Functional Gain - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44437121 chr1:44437122 nonsynonymous SNV 0.595 1 22 hm5C_associated_SNPs_115810 0 0 0 0 1 DPH2 chr1:44437059 3'AG 44437059 Downstream 64bp
chr19 37428067 37428067 1 + C T SKCM 37428066 + 37428046 37428086 41 TAGGCTGTCAAGTCACCAAACCGGATGTGATATTCAAGTTG TAGGCTGTCAAGTCACCAAACTGGATGTGATATTCAAGTTG < 41bp 0.533189033586183 0.761776578965055 0.63580716 0.33368295 prediction 0.457175090757743 Functional Gain - ZNF568 ENSG00000198453 CDS Human protein_coding chr19:37428066 chr19:37428067 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_115811 0 0 1 0 2 ZNF568 chr19:37428049 3'AG 37428049 Downstream 19bp
chr19 37428067 37428067 1 + C T SKCM 37428066 + 37428046 37428086 41 TAGGCTGTCAAGTCACCAAACCGGATGTGATATTCAAGTTG TAGGCTGTCAAGTCACCAAACTGGATGTGATATTCAAGTTG < 41bp 0.533189033586183 0.761776578965055 0.63580716 0.33368295 prediction 0.457175090757743 Functional Gain - ZNF568 ENSG00000198453 CDS Human protein_coding chr19:37428066 chr19:37428067 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_115811 0 0 1 0 2 ZNF568 chr19:37428144 5'GT 37428144 Upstream 78bp
chr1 17531718 17531718 1 + C T SKCM 17531717 + 17531697 17531737 41 GGAGCCAGGTGACAGGATGGCCCCAAAGAGAGTTGTGCAGC GGAGCCAGGTGACAGGATGGCTCCAAAGAGAGTTGTGCAGC < 41bp 0.540568506859412 0.769155321891789 0.08878714 0.89850307 prediction 0.457173630064754 Functional Gain - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17531717 chr1:17531718 synonymous SNV . 0 22 hm5C_associated_SNPs_115812 0 0 0 0 1 PADI1 chr1:17531804 5'GT 17531804 Upstream 87bp
chr22 26701995 26701995 1 + C A LUAD 26701991 + 26701971 26702011 41 GCCACCATCGGCCGCGTCCTCTCCCCAAGTTACCCTGAAAA GCCACCATCGGCCGCGTCCTCTCCACAAGTTACCCTGAAAA < 41bp 0.286951614818003 0.728584800546301 0.09194693 0.9461439 prediction 0.457169601092603 Functional Gain - SEZ6L ENSG00000100095 CDS Human protein_coding chr22:26701991 chr22:26701995 nonsynonymous SNV 0.865 4 25 hm5C_associated_SNPs_115813 0 0 0 0 1 SEZ6L chr22:26701945 3'AG 26701945 Downstream 51bp
chr5 109026191 109026191 1 + A G LIHC 109026188 + 109026168 109026208 41 TGGTGATTTTCTCGCTCTACCTGATGCTGGACCGGGGTCAC TGGTGATTTTCTCGCTCTACCTGGTGCTGGACCGGGGTCAC < 41bp 0.544530569599324 0.773104351384629 0.100274295 0.18399888 prediction 0.45714756357061 Functional Gain - MAN2A1 ENSG00000112893 CDS Human protein_coding chr5:109026188 chr5:109026191 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_115816 0 0 1 0 1 MAN2A1 chr5:109026253 5'GT 109026253 Upstream 63bp
chr5 176794003 176794003 1 + C G rs550386385 176794002 + 176793982 176794022 41 GAGGAGGTGCTGGCCGAGCCCCGGCCGGACATGTTTCGGGC GAGGAGGTGCTGGCCGAGCCCGGGCCGGACATGTTTCGGGC < 41bp 0.650834363503366 0.879401151520157 0.24701309 0.79247606 prediction 0.457133576033582 Functional Gain - RGS14 ENSG00000169220 CDS Human protein_coding chr5:176794002 chr5:176794003 nonsynonymous SNV 0.827 0 22 hm5C_associated_SNPs_115819 0 0 0 0 1 RGS14 chr5:176794035 5'GT 176794035 Upstream 33bp
chrX 7177444 7177444 1 + C A STAD 7177440 + 7177420 7177460 41 GCAAGACTGACTTCTGTCACCACCCTTTACATCACGGCTTC GCAAGACTGACTTCTGTCACCACCATTTACATCACGGCTTC < 41bp 0.299297472768798 0.728560347453694 0.06284112 0.16386762 prediction 0.457120694907387 Functional Gain - STS ENSG00000101846 CDS Human protein_coding chrX:7177440 chrX:7177444 nonsynonymous SNV 0.456 5 25 hm5C_associated_SNPs_115823 0 0 0 0 1 STS chrX:7177390 3'AG 7177390 Downstream 55bp
chr10 74886544 74886544 1 + A G rs17658872 74886541 + 74886521 74886561 41 GGCCCTTCCCTAGTGGCTCACTCATGATTGCTTGCCATGCA GGCCCTTCCCTAGTGGCTCACTCGTGATTGCTTGCCATGCA < 41bp 0.492934834314362 0.728552863946078 0.26758093 0.3575561 prediction 0.457105727892155 Functional Gain - NUDT13 ENSG00000166321 CDS Human protein_coding chr10:74886541 chr10:74886544 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_115825 0 0 1 1 1 NUDT13 chr10:74886585 5'GT 74886585 Upstream 42bp
chr17 58013617 58013617 1 + T G GBM 58013615 + 58013595 58013635 41 CTTCTCGTCTGGGAGCTGGTCCTGGGGACGCTGGAGAAGTT CTTCTCGTCTGGGAGCTGGTCCGGGGGACGCTGGAGAAGTT < 41bp 0.374098741553449 0.728548185074774 0.3966274 0.88896203 prediction 0.457096370149547 Functional Gain - RPS6KB1 ENSG00000108443 CDS Human protein_coding chr17:58013615 chr17:58013617 synonymous SNV . 0 23 hm5C_associated_SNPs_115827 0 0 1 0 2 RPS6KB1 chr17:58013576 3'AG 58013576 Downstream 42bp
chr17 58013617 58013617 1 + T G GBM 58013615 + 58013595 58013635 41 CTTCTCGTCTGGGAGCTGGTCCTGGGGACGCTGGAGAAGTT CTTCTCGTCTGGGAGCTGGTCCGGGGGACGCTGGAGAAGTT < 41bp 0.374098741553449 0.728548185074774 0.3966274 0.88896203 prediction 0.457096370149547 Functional Gain - RPS6KB1 ENSG00000108443 CDS Human protein_coding chr17:58013615 chr17:58013617 synonymous SNV . 0 23 hm5C_associated_SNPs_115827 0 0 1 0 2 RPS6KB1 chr17:58013638 5'GT 58013638 Upstream 22bp
chr17 53345418 53345418 1 + C T COAD 53345417 + 53345397 53345437 41 TTCACCCTGGCATCCCATCTCCGAACTGTATGCAGAGCCCC TTCACCCTGGCATCCCATCTCTGAACTGTATGCAGAGCCCC < 41bp 0.580356692852308 0.808901148793839 0.49146885 0.09151605 prediction 0.457088911883063 Functional Gain - HLF ENSG00000108924 CDS Human protein_coding chr17:53345417 chr17:53345418 nonsynonymous SNV 0.993 0 22 hm5C_associated_SNPs_115831 0 0 0 0 1 HLF chr17:53345447 5'GT 53345447 Upstream 30bp
chr17 41570095 41570095 1 + C T STAD 41570094 + 41570074 41570114 41 AGTCGAAGCCGAGATCGAAACCGAGATCGAGACAGAGATAG AGTCGAAGCCGAGATCGAAACTGAGATCGAGACAGAGATAG < 41bp 0.518039851325098 0.746583372735465 0.15610924 0.23589921 prediction 0.457087042820734 Functional Gain - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41570094 chr17:41570095 stopgain 0.634 1 22 hm5C_associated_SNPs_115832 0 0 1 0 1 DHX8 chr17:41570049 3'AG 41570049 Downstream 47bp
chr7 142563272 142563272 1 + C T SKCM 142563271 + 142563251 142563291 41 AGTCTTCTGCTGGGAATGCTCCCTGCTCACCATGCCCTGCC AGTCTTCTGCTGGGAATGCTCTCTGCTCACCATGCCCTGCC < 41bp 0.553573851721006 0.782117347146506 0.26083064 0.25779557 prediction 0.457086990851001 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142563271 chr7:142563272 nonsynonymous SNV 0.024 0 22 hm5C_associated_SNPs_115833 0 0 0 0 1 EPHB6 chr7:142563230 3'AG 142563230 Downstream 43bp
chr2 102804317 102804317 1 + C G BRCA 102804316 + 102804296 102804336 41 CTCTTCTCCCTTCCTTGCAGCCCGGTTTGGGGATGTGGTCC CTCTTCTCCCTTCCTTGCAGCGCGGTTTGGGGATGTGGTCC < 41bp 0.498621130562599 0.728535910477113 0.027762711 0.15470138 prediction 0.457071820954225 Functional Gain - IL1RL2 ENSG00000115598 CDS Human protein_coding chr2:102804316 chr2:102804317 nonsynonymous SNV 0.402 1 22 hm5C_associated_SNPs_115836 0 0 0 0 2 IL1RL2 chr2:102804316 3'AG 102804316 Downstream 2bp
chr2 102804317 102804317 1 + C G BRCA 102804316 + 102804296 102804336 41 CTCTTCTCCCTTCCTTGCAGCCCGGTTTGGGGATGTGGTCC CTCTTCTCCCTTCCTTGCAGCGCGGTTTGGGGATGTGGTCC < 41bp 0.498621130562599 0.728535910477113 0.027762711 0.15470138 prediction 0.457071820954225 Functional Gain - IL1RL2 ENSG00000115598 CDS Human protein_coding chr2:102804316 chr2:102804317 nonsynonymous SNV 0.402 1 22 hm5C_associated_SNPs_115836 0 0 0 0 2 IL1RL2 chr2:102804385 5'GT 102804385 Upstream 69bp
chr8 72755854 72755854 1 + C G rs534132944 72755853 + 72755833 72755873 41 GGTATCTCCTGGCTGCTCTCCCGAATCCTTGCGCGCCGCGC GGTATCTCCTGGCTGCTCTCCGGAATCCTTGCGCGCCGCGC < 41bp 0.635343028974432 0.863877548353936 0.9041552 0.9375372 prediction 0.457069038759008 Functional Gain - MSC-AS1 ENSG00000235531 CDS Human other chr8:72755853 chr8:72755854 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_115837 0 0 0 0 1 MSC chr8:72755939 5'GT 72755939 Upstream 86bp
chr16 57850192 57850192 1 + T C rs918743 57850190 + 57850170 57850210 41 CCTTGCCCCAAACCCAGAAGCCTGAGGAAGTAAGGAAGTGC CCTTGCCCCAAACCCAGAAGCCCGAGGAAGTAAGGAAGTGC < 41bp 0.548841063868589 0.77736038735189 0.33401144 0.46964762 prediction 0.457038646966602 Functional Gain - LOC388282 ENSG00000187185 CDS Human lincRNA chr16:57850190 chr16:57850192 synonymous SNV . 0 23 hm5C_associated_SNPs_115841 0 0 0 0 1 LOC388282 chr16:57850124 3'AG 57850124 Downstream 69bp
chr7 1027134 1027134 1 + C G HNSC 1027130 + 1027110 1027150 41 GCACGTGCCCCGCTGCACCGCGGCCGACACACAGCTGGGCG GCACGTGCCCCGCTGCACCGCGGCGGACACACAGCTGGGCG < 41bp 0.621788287451993 0.850302036364383 0.72473335 0.8371898 prediction 0.45702749782478 Functional Gain - CYP2W1 ENSG00000073067 CDS Human protein_coding chr7:1027130 chr7:1027134 synonymous SNV . 0 25 hm5C_associated_SNPs_115843 0 0 1 0 1 CYP2W1 chr7:1027167 5'GT 1027167 Upstream 34bp
chr1 196967340 196967340 1 + T G STAD 196967338 + 196967318 196967358 41 TATCTGGGAAAGAATTTAATCATAATTCTAGAATACGTTAC TATCTGGGAAAGAATTTAATCAGAATTCTAGAATACGTTAC < 41bp 0.403685769001287 0.728511825552373 0.20849544 0.79926276 prediction 0.457023651104746 Functional Gain - CFHR5 ENSG00000134389 CDS Human protein_coding chr1:196967338 chr1:196967340 nonsynonymous SNV 0.006 1 23 hm5C_associated_SNPs_115845 0 0 0 0 2 CFHR5 chr1:196967258 3'AG 196967258 Downstream 83bp
chr1 196967340 196967340 1 + T G STAD 196967338 + 196967318 196967358 41 TATCTGGGAAAGAATTTAATCATAATTCTAGAATACGTTAC TATCTGGGAAAGAATTTAATCAGAATTCTAGAATACGTTAC < 41bp 0.403685769001287 0.728511825552373 0.20849544 0.79926276 prediction 0.457023651104746 Functional Gain - CFHR5 ENSG00000134389 CDS Human protein_coding chr1:196967338 chr1:196967340 nonsynonymous SNV 0.006 1 23 hm5C_associated_SNPs_115845 0 0 0 0 2 CFHR5 chr1:196967434 5'GT 196967434 Upstream 95bp
chr19 8495694 8495694 1 + C T UCEC 8495693 + 8495673 8495713 41 GCTCCACAGCCAGCTGGAGGCCGTGGGTCTCATTGCCCTCA GCTCCACAGCCAGCTGGAGGCTGTGGGTCTCATTGCCCTCA < 41bp 0.529006346008894 0.757514851044432 0.34976238 0.20070821 prediction 0.457017010071076 Functional Gain - MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8495693 chr19:8495694 synonymous SNV . 0 22 hm5C_associated_SNPs_115847 0 0 0 0 1 MARCH2 chr19:8495751 5'GT 8495751 Upstream 58bp
chr10 75549793 75549793 1 + C T COAD 75549792 + 75549772 75549812 41 TCAATACAGTGTGTGGAGCTCCGGGTGAGTGTGGTGAGAAA TCAATACAGTGTGTGGAGCTCTGGGTGAGTGTGGTGAGAAA < 41bp 0.49221260161975 0.728506203066048 0.86381143 0.69636977 prediction 0.457012406132097 Functional Gain - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75549792 chr10:75549793 nonsynonymous SNV 0.900 3 22 hm5C_associated_SNPs_115849 0 0 1 0 2 ZSWIM8 chr10:75549714 3'AG 75549714 Downstream 80bp
chr10 75549793 75549793 1 + C T COAD 75549792 + 75549772 75549812 41 TCAATACAGTGTGTGGAGCTCCGGGTGAGTGTGGTGAGAAA TCAATACAGTGTGTGGAGCTCTGGGTGAGTGTGGTGAGAAA < 41bp 0.49221260161975 0.728506203066048 0.86381143 0.69636977 prediction 0.457012406132097 Functional Gain - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75549792 chr10:75549793 nonsynonymous SNV 0.900 3 22 hm5C_associated_SNPs_115849 0 0 1 0 2 ZSWIM8 chr10:75549795 5'GT 75549795 Upstream 3bp
chr1 15789234 15789234 1 + C T SKCM 15789233 + 15789213 15789253 41 CCCCCTTTCTCCCAGCTCCTCCAGGACCTACCGCGTGGGGC CCCCCTTTCTCCCAGCTCCTCTAGGACCTACCGCGTGGGGC < 41bp 0.509759552167401 0.738264429592466 0.37376165 0.16148522 prediction 0.457009754850131 Functional Gain - CELA2A ENSG00000142615 CDS Human protein_coding chr1:15789233 chr1:15789234 synonymous SNV . 0 22 hm5C_associated_SNPs_115850 0 0 0 0 1 CELA2A chr1:15789228 3'AG 15789228 Downstream 7bp
chr19 15784427 15784427 1 + C A rs76142062 15784423 + 15784403 15784443 41 CTGCTGCTGGTTGTGGGCTCCTGGCTACTCGCCCGCATCCT CTGCTGCTGGTTGTGGGCTCCTGGATACTCGCCCGCATCCT < 41bp 0.703283980533681 0.931787366619177 0.5305486 0.86165965 prediction 0.457006772170993 Functional Gain - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15784423 chr19:15784427 nonsynonymous SNV 0.009 1 25 hm5C_associated_SNPs_115852 0 0 1 0 1 CYP4F12 chr19:15784339 3'AG 15784339 Downstream 89bp
chr2 233244551 233244551 1 + C T COAD 233244550 + 233244530 233244570 41 ACCTACGCCCACACGGTGAACCGCAACTGGTACTCGGACGC ACCTACGCCCACACGGTGAACTGCAACTGGTACTCGGACGC < 41bp 0.564008811237034 0.792508078325387 0.89462614 0.5288056 prediction 0.456998534176707 Functional Gain - ALPP ENSG00000163283 CDS Human protein_coding chr2:233244550 chr2:233244551 nonsynonymous SNV 0.228 4 22 hm5C_associated_SNPs_115854 0 0 0 0 2 ALPP chr2:233244474 3'AG 233244474 Downstream 78bp
chr2 233244551 233244551 1 + C T COAD 233244550 + 233244530 233244570 41 ACCTACGCCCACACGGTGAACCGCAACTGGTACTCGGACGC ACCTACGCCCACACGGTGAACTGCAACTGGTACTCGGACGC < 41bp 0.564008811237034 0.792508078325387 0.89462614 0.5288056 prediction 0.456998534176707 Functional Gain - ALPP ENSG00000163283 CDS Human protein_coding chr2:233244550 chr2:233244551 nonsynonymous SNV 0.228 4 22 hm5C_associated_SNPs_115854 0 0 0 0 2 ALPP chr2:233244646 5'GT 233244646 Upstream 96bp
chr17 16321163 16321163 1 + C T LGG 16321162 + 16321142 16321182 41 ATAAGAGTCAACCTCAACTACCGAAAGGGAACAGGTGCCAG ATAAGAGTCAACCTCAACTACTGAAAGGGAACAGGTGCCAG < 41bp 0.561824334416102 0.790319937842067 0.10789585 0.07717574 prediction 0.456991206851928 Functional Gain - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16321162 chr17:16321163 stopgain 0.003 0 22 hm5C_associated_SNPs_115856 0 0 1 0 1 TRPV2 chr17:16321182 5'GT 16321182 Upstream 20bp
chr17 18638289 18638289 1 + C T SKCM 18638288 + 18638268 18638308 41 ACACCACGCCCTGGGAGCATCCCTACCCGGACCTCCCCAGC ACACCACGCCCTGGGAGCATCTCTACCCGGACCTCCCCAGC < 41bp 0.585733300295088 0.814220901500209 0.11533454 0.8387475 prediction 0.456975202410243 Functional Gain - TRIM16L ENSG00000108448 CDS Human protein_coding chr17:18638288 chr17:18638289 nonsynonymous SNV 0.961 3 22 hm5C_associated_SNPs_115858 0 0 0 0 1 TRIM16L chr17:18638190 3'AG 18638190 Downstream 100bp
chr10 75672723 75672723 1 + C A UCEC 75672722 + 75672702 75672742 41 GAGGGGAATGGTCACTTTTACCGAGGAAAGGCCAGCACTGA GAGGGGAATGGTCACTTTTACAGAGGAAAGGCCAGCACTGA < 41bp 0.595522732597228 0.824005406603567 0.9230015 0.93922913 prediction 0.456965348012679 Functional Gain - PLAU ENSG00000122861 CDS Human protein_coding chr10:75672722 chr10:75672723 synonymous SNV . 0 22 hm5C_associated_SNPs_115860 0 0 0 0 1 PLAU chr10:75672682 3'AG 75672682 Downstream 42bp
chr17 78078437 78078437 1 + C A SKCM 78078433 + 78078413 78078453 41 CACCGGCTCCTGGCCGTCTGCGCCCTCGTGTCCTTGGCAAC CACCGGCTCCTGGCCGTCTGCGCCATCGTGTCCTTGGCAAC < 41bp 0.32610225549166 0.728474290844 0.14424103 0.3183087 prediction 0.456948581688001 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78078433 chr17:78078437 nonsynonymous SNV 0.005 1 25 hm5C_associated_SNPs_115862 0 0 1 0 1 GAA chr17:78078354 3'AG 78078354 Downstream 84bp
chr6 26375821 26375821 1 + T C rs138643110 26375819 + 26375799 26375839 41 CTGTCCATAGAGGACAGATTCCTGGGGTCCAGAAGAGGGTG CTGTCCATAGAGGACAGATTCCCGGGGTCCAGAAGAGGGTG < 41bp 0.509304593816884 0.737774459614797 0.12714109 0.36986217 prediction 0.456939731595828 Functional Gain - BTN3A2 ENSG00000186470 UTR3 Human protein_coding chr6:26375819 chr6:26375821 . . 0 23 hm5C_associated_SNPs_115863 0 0 0 0 1 BTN3A2 chr6:26375743 3'AG 26375743 Downstream 79bp
chr22 23653977 23653977 1 + C T SKCM 23653976 + 23653956 23653996 41 GGTGGGCATCTACCGCGTGTCCGGTGTGGCCACGGACATCC GGTGGGCATCTACCGCGTGTCTGGTGTGGCCACGGACATCC < 41bp 0.55257735590096 0.7810453937577 0.313817 0.41479945 prediction 0.45693607571348 Functional Gain - BCR ENSG00000186716 CDS Human protein_coding chr22:23653976 chr22:23653977 synonymous SNV . 0 22 hm5C_associated_SNPs_115864 0 0 1 0 2 BCR chr22:23653884 3'AG 23653884 Downstream 94bp
chr22 23653977 23653977 1 + C T SKCM 23653976 + 23653956 23653996 41 GGTGGGCATCTACCGCGTGTCCGGTGTGGCCACGGACATCC GGTGGGCATCTACCGCGTGTCTGGTGTGGCCACGGACATCC < 41bp 0.55257735590096 0.7810453937577 0.313817 0.41479945 prediction 0.45693607571348 Functional Gain - BCR ENSG00000186716 CDS Human protein_coding chr22:23653976 chr22:23653977 synonymous SNV . 0 22 hm5C_associated_SNPs_115864 0 0 1 0 2 BCR chr22:23654023 5'GT 23654023 Upstream 47bp
chr9 133370306 133370306 1 + C T SKCM 133370305 + 133370285 133370325 41 CCGCCACTGCATCGCCAAGTCCCAGGAGCGAGTGGAAGGGA CCGCCACTGCATCGCCAAGTCTCAGGAGCGAGTGGAAGGGA < 41bp 0.461115177533723 0.728465921805532 0.08633354 0.04486358 prediction 0.456931843611063 Functional Gain - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133370305 chr9:133370306 synonymous SNV . 0 22 hm5C_associated_SNPs_115866 0 0 1 0 1 ASS1 chr9:133370254 3'AG 133370254 Downstream 53bp
chr5 176301357 176301357 1 + C T SARC 176301356 + 176301336 176301376 41 CCCCGGCAGGATGGGCCCAGCCCCAAGTTCCAGCTCACCAA CCCCGGCAGGATGGGCCCAGCTCCAAGTTCCAGCTCACCAA < 41bp 0.614762209825979 0.843227505971472 0.36892945 0.9319175 prediction 0.456930592290984 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176301356 chr5:176301357 nonsynonymous SNV 0.994 0 22 hm5C_associated_SNPs_115867 0 0 0 0 1 UNC5A chr5:176301265 3'AG 176301265 Downstream 93bp
chr20 42876070 42876070 1 + C G KIRC 42876066 + 42876046 42876086 41 GGCCAAGCCAGCGGAGGCCCCCGACGCTCCCGAGGCGGCCA GGCCAAGCCAGCGGAGGCCCCCGAGGCTCCCGAGGCGGCCA < 41bp 0.447362635959045 0.728453157803222 0.20234555 0.7422001 prediction 0.456906315606444 Functional Gain - GDAP1L1 ENSG00000124194 CDS Human protein_coding chr20:42876066 chr20:42876070 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_115871 0 0 1 0 1 GDAP1L1 chr20:42876154 5'GT 42876154 Upstream 85bp
chr1 95303364 95303364 1 + C T UCEC 95303363 + 95303343 95303383 41 AATGATGTTGACACCCTCCACCGAATTCTAAGTGGAATCAT AATGATGTTGACACCCTCCACTGAATTCTAAGTGGAATCAT < 41bp 0.565214902494932 0.793662344280248 0.017419994 0.02691558 prediction 0.45689488357063 Functional Gain - SLC44A3 ENSG00000143036 CDS Human protein_coding chr1:95303363 chr1:95303364 stopgain 0.939 0 22 hm5C_associated_SNPs_115872 0 0 0 0 2 SLC44A3 chr1:95303267 3'AG 95303267 Downstream 98bp
chr1 95303364 95303364 1 + C T UCEC 95303363 + 95303343 95303383 41 AATGATGTTGACACCCTCCACCGAATTCTAAGTGGAATCAT AATGATGTTGACACCCTCCACTGAATTCTAAGTGGAATCAT < 41bp 0.565214902494932 0.793662344280248 0.017419994 0.02691558 prediction 0.45689488357063 Functional Gain - SLC44A3 ENSG00000143036 CDS Human protein_coding chr1:95303363 chr1:95303364 stopgain 0.939 0 22 hm5C_associated_SNPs_115872 0 0 0 0 2 SLC44A3 chr1:95303427 5'GT 95303427 Upstream 64bp
chr19 51919975 51919975 1 + C T SKCM 51919974 + 51919954 51919994 41 CACACCCTTTCTGGAGAAGTCCACATGGCAGGTGAGGTCGG CACACCCTTTCTGGAGAAGTCTACATGGCAGGTGAGGTCGG < 41bp 0.550289860323246 0.778735472786504 0.15649042 0.91270125 prediction 0.456891224926517 Functional Gain - LOC100129083;SIGLEC10 ENSG00000142512 CDS Human protein_coding chr19:51919974 chr19:51919975 synonymous SNV . 0 22 hm5C_associated_SNPs_115874 0 0 0 0 1 LOC100129083;SIGLEC10 chr19:51919984 5'GT 51919984 Upstream 10bp
chr19 42260848 42260848 1 + C T rs61736637 42260847 + 42260827 42260867 41 TCTTGTGAATGAAGAAGCAACCGGACAGTTCCATGTATACC TCTTGTGAATGAAGAAGCAACTGGACAGTTCCATGTATACC < 41bp 0.509106279478844 0.737551312314068 0.08356324 0.10825908 prediction 0.456890065670448 Functional Gain - CEACAM6 ENSG00000086548 CDS Human protein_coding chr19:42260847 chr19:42260848 synonymous SNV . 0 22 hm5C_associated_SNPs_115875 0 0 0 0 1 CEACAM6 chr19:42260867 5'GT 42260867 Upstream 20bp
chr19 16884091 16884091 1 + C T rs571705748 16884090 + 16884070 16884110 41 CCTCGGAGGATTCCTCCAGCCCCCGGGAGGACCCCTCCGGG CCTCGGAGGATTCCTCCAGCCTCCGGGAGGACCCCTCCGGG < 41bp 0.585839468048989 0.814284364981232 0.2860316 0.49213213 prediction 0.456889793864485 Functional Gain - NWD1 ENSG00000188039 CDS Human protein_coding chr19:16884090 chr19:16884091 synonymous SNV . 0 22 hm5C_associated_SNPs_115876 0 0 0 0 1 NWD1 chr19:16884134 5'GT 16884134 Upstream 44bp
chr10 96954360 96954360 1 + T A rs11188225 96954356 + 96954336 96954376 41 ACCATCAGACCCCCTGACTCCAGGTGCCTAGTCCAAGCAGT ACCATCAGACCCCCTGACTCCAGGAGCCTAGTCCAAGCAGT < 41bp 0.647963621082472 0.876405098833163 0.9492783 0.9239094 prediction 0.456882955501383 Functional Gain - ACSM6 ENSG00000173124 CDS Human protein_coding chr10:96954356 chr10:96954360 nonsynonymous SNV 0.011 0 25 hm5C_associated_SNPs_115880 0 0 0 0 1 ACSM6 chr10:96954434 5'GT 96954434 Upstream 75bp
chr19 37618097 37618097 1 + C T UCEC 37618096 + 37618076 37618116 41 CACTTATGAAACAGAATTATCCCAATGGGAAATGAGTGACA CACTTATGAAACAGAATTATCTCAATGGGAAATGAGTGACA < 41bp 0.494196962981 0.728440117852056 0.043430984 0.124106824 prediction 0.456880235704111 Functional Gain - ZNF420 ENSG00000197050 CDS Human protein_coding chr19:37618096 chr19:37618097 synonymous SNV . 0 22 hm5C_associated_SNPs_115882 0 0 1 0 1 ZNF420 chr19:37618030 3'AG 37618030 Downstream 68bp
chr8 121514792 121514792 1 + C A KIRC 121514791 + 121514771 121514811 41 AAACCAATCCTCTGGAATGGCCAGAAAGGCATGTTCTTCAA AAACCAATCCTCTGGAATGGCAAGAAAGGCATGTTCTTCAA < 41bp 0.565848784821971 0.794288555349409 0.13806364 0.17832217 prediction 0.456879541054877 Functional Gain - MTBP ENSG00000172167 CDS Human protein_coding chr8:121514791 chr8:121514792 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_115884 0 0 1 0 2 MTBP chr8:121514732 3'AG 121514732 Downstream 61bp
chr8 121514792 121514792 1 + C A KIRC 121514791 + 121514771 121514811 41 AAACCAATCCTCTGGAATGGCCAGAAAGGCATGTTCTTCAA AAACCAATCCTCTGGAATGGCAAGAAAGGCATGTTCTTCAA < 41bp 0.565848784821971 0.794288555349409 0.13806364 0.17832217 prediction 0.456879541054877 Functional Gain - MTBP ENSG00000172167 CDS Human protein_coding chr8:121514791 chr8:121514792 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_115884 0 0 1 0 2 MTBP chr8:121514849 5'GT 121514849 Upstream 58bp
chr9 132982024 132982024 1 + C T COAD 132982023 + 132982003 132982043 41 GGACGGGCGAATTGAGTTCTCCGAGTTCATCCAGGCGCTGT GGACGGGCGAATTGAGTTCTCTGAGTTCATCCAGGCGCTGT < 41bp 0.528144736491656 0.756574161823957 0.7269932 0.4012696 prediction 0.456858850664603 Functional Gain - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132982023 chr9:132982024 synonymous SNV . 0 22 hm5C_associated_SNPs_115887 0 0 0 0 2 NCS1 chr9:132982004 3'AG 132982004 Downstream 21bp
chr9 132982024 132982024 1 + C T COAD 132982023 + 132982003 132982043 41 GGACGGGCGAATTGAGTTCTCCGAGTTCATCCAGGCGCTGT GGACGGGCGAATTGAGTTCTCTGAGTTCATCCAGGCGCTGT < 41bp 0.528144736491656 0.756574161823957 0.7269932 0.4012696 prediction 0.456858850664603 Functional Gain - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132982023 chr9:132982024 synonymous SNV . 0 22 hm5C_associated_SNPs_115887 0 0 0 0 2 NCS1 chr9:132982082 5'GT 132982082 Upstream 59bp
chr17 2274703 2274703 1 + C T SKCM 2274702 + 2274682 2274722 41 CCAGCCACTGTAGCTGCATCCCCGACCGGTGAGTGGGCAGC CCAGCCACTGTAGCTGCATCCTCGACCGGTGAGTGGGCAGC < 41bp 0.57739149783899 0.805819836892349 0.07742494 0.32753947 prediction 0.456856678106718 Functional Gain - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2274702 chr17:2274703 nonsynonymous SNV 0.071 0 22 hm5C_associated_SNPs_115888 0 0 0 0 1 SGSM2 chr17:2274709 5'GT 2274709 Upstream 7bp
chr5 161569232 161569232 1 + C A LUAD 161569228 + 161569208 161569248 41 AGAAGAATGGGATACTTTACCATCCAGACCTATATCCCCTG AGAAGAATGGGATACTTTACCATCAAGACCTATATCCCCTG < 41bp 0.304856060299862 0.728423007011398 0.06774926 0.05477178 prediction 0.456846014022796 Functional Gain - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161569228 chr5:161569232 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_115892 0 0 0 0 2 GABRG2 chr5:161569170 3'AG 161569170 Downstream 63bp
chr5 161569232 161569232 1 + C A LUAD 161569228 + 161569208 161569248 41 AGAAGAATGGGATACTTTACCATCCAGACCTATATCCCCTG AGAAGAATGGGATACTTTACCATCAAGACCTATATCCCCTG < 41bp 0.304856060299862 0.728423007011398 0.06774926 0.05477178 prediction 0.456846014022796 Functional Gain - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161569228 chr5:161569232 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_115892 0 0 0 0 2 GABRG2 chr5:161569322 5'GT 161569322 Upstream 91bp
chr4 41621405 41621405 1 + C T UCEC 41621404 + 41621384 41621424 41 AAAGCAGAGAGAGAGGAATACCGCAAGAGCTGGAGTACCGC AAAGCAGAGAGAGAGGAATACTGCAAGAGCTGGAGTACCGC < 41bp 0.534919986013894 0.763342053040494 0.20033461 0.5230978 prediction 0.4568441340532 Functional Gain - LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41621404 chr4:41621405 nonsynonymous SNV 0.525 4 22 hm5C_associated_SNPs_115893 0 0 0 0 1 LIMCH1 chr4:41621457 5'GT 41621457 Upstream 53bp
chr14 93282745 93282745 1 + T C HNSC 93282743 + 93282723 93282763 41 AGAAGCTGATGGGCCAGATACATCAGCTCAGATCCGAATTA AGAAGCTGATGGGCCAGATACACCAGCTCAGATCCGAATTA < 41bp 0.630220959258181 0.858641351704692 0.28079024 0.3462233 prediction 0.456840784893023 Functional Gain - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93282743 chr14:93282745 synonymous SNV . 0 23 hm5C_associated_SNPs_115894 0 0 1 0 1 GOLGA5 chr14:93282766 5'GT 93282766 Upstream 22bp
chrX 2998964 2998964 1 + C T HNSC 2998963 + 2998943 2998983 41 AGTGGTAATAGACGTGTCATCCAAAATCTTGCAGTCCCCGC AGTGGTAATAGACGTGTCATCTAAAATCTTGCAGTCCCCGC < 41bp 0.538236513100137 0.76665647170442 0.11221117 0.19463453 prediction 0.456839917208565 Functional Gain - ARSF ENSG00000062096 CDS Human protein_coding chrX:2998963 chrX:2998964 stopgain 0.000 0 22 hm5C_associated_SNPs_115895 0 0 0 0 2 ARSF chrX:2998932 3'AG 2998932 Downstream 33bp
chrX 2998964 2998964 1 + C T HNSC 2998963 + 2998943 2998983 41 AGTGGTAATAGACGTGTCATCCAAAATCTTGCAGTCCCCGC AGTGGTAATAGACGTGTCATCTAAAATCTTGCAGTCCCCGC < 41bp 0.538236513100137 0.76665647170442 0.11221117 0.19463453 prediction 0.456839917208565 Functional Gain - ARSF ENSG00000062096 CDS Human protein_coding chrX:2998963 chrX:2998964 stopgain 0.000 0 22 hm5C_associated_SNPs_115895 0 0 0 0 2 ARSF chrX:2999054 5'GT 2999054 Upstream 91bp
chrX 117480540 117480540 1 + T G STAD 117480537 + 117480517 117480557 41 GCACCTAGGGGGCGGCTACCCCGTGGGGTAAGTGACTGCAG GCACCTAGGGGGCGGCTACCCCGGGGGGTAAGTGACTGCAG < 41bp 0.695200140146703 0.923619848667183 0.6187315 0.9323549 prediction 0.45683941704096 Functional Gain - WDR44 ENSG00000131725 CDS Human protein_coding chrX:117480537 chrX:117480540 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_115896 0 0 0 0 1 WDR44 chrX:117480543 5'GT 117480543 Upstream 4bp
chr11 85345229 85345229 1 + T C STAD 85345227 + 85345207 85345247 41 GACGCTGCTTCAAGGTTAAACATGATGCTTTGAAGACATAT GACGCTGCTTCAAGGTTAAACACGATGCTTTGAAGACATAT < 41bp 0.596877137281918 0.82529426657985 0.07559341 0.061986923 prediction 0.456834258595864 Functional Gain - TMEM126B ENSG00000171204 CDS Human protein_coding chr11:85345227 chr11:85345229 synonymous SNV . 0 23 hm5C_associated_SNPs_115898 0 0 1 0 2 TMEM126B chr11:85345130 3'AG 85345130 Downstream 100bp
chr11 85345229 85345229 1 + T C STAD 85345227 + 85345207 85345247 41 GACGCTGCTTCAAGGTTAAACATGATGCTTTGAAGACATAT GACGCTGCTTCAAGGTTAAACACGATGCTTTGAAGACATAT < 41bp 0.596877137281918 0.82529426657985 0.07559341 0.061986923 prediction 0.456834258595864 Functional Gain - TMEM126B ENSG00000171204 CDS Human protein_coding chr11:85345227 chr11:85345229 synonymous SNV . 0 23 hm5C_associated_SNPs_115898 0 0 1 0 2 TMEM126B chr11:85345323 5'GT 85345323 Upstream 95bp
chr8 22969284 22969284 1 + A G UCEC 22969281 + 22969261 22969301 41 GGCAGGAGGAAGTTCCCCAGCAGACAGTGGCCCCACAGCAA GGCAGGAGGAAGTTCCCCAGCAGGCAGTGGCCCCACAGCAA < 41bp 0.575827045509084 0.804238993090018 0.41523215 0.8599727 prediction 0.456823895161869 Functional Gain - TNFRSF10C ENSG00000173535 CDS Human protein_coding chr8:22969281 chr8:22969284 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_115900 0 0 0 0 2 TNFRSF10C chr8:22969233 3'AG 22969233 Downstream 52bp
chr8 22969284 22969284 1 + A G UCEC 22969281 + 22969261 22969301 41 GGCAGGAGGAAGTTCCCCAGCAGACAGTGGCCCCACAGCAA GGCAGGAGGAAGTTCCCCAGCAGGCAGTGGCCCCACAGCAA < 41bp 0.575827045509084 0.804238993090018 0.41523215 0.8599727 prediction 0.456823895161869 Functional Gain - TNFRSF10C ENSG00000173535 CDS Human protein_coding chr8:22969281 chr8:22969284 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_115900 0 0 0 0 2 TNFRSF10C chr8:22969338 5'GT 22969338 Upstream 55bp
chr20 18576790 18576790 1 + A G UCEC 18576787 + 18576767 18576807 41 TGTCCTGAAGGGAAACAAGCCTGATTTCCACCTAGCAATGC TGTCCTGAAGGGAAACAAGCCTGGTTTCCACCTAGCAATGC < 41bp 0.531033466407115 0.75944124106735 0.072466075 0.26129097 prediction 0.456815549320469 Functional Gain - DTD1 ENSG00000125821 CDS Human protein_coding chr20:18576787 chr20:18576790 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_115906 0 0 1 0 1 DTD1 chr20:18576885 5'GT 18576885 Upstream 96bp
chrX 153678615 153678615 1 + C T SKCM 153678614 + 153678594 153678634 41 AGAAGAACAAGCACATCTTTCCCGCCAGCCGCTGGGAACCC AGAAGAACAAGCACATCTTTCTCGCCAGCCGCTGGGAACCC < 41bp 0.47426913657859 0.728405324503518 0.2793628 0.17872703 prediction 0.456810649007037 Functional Gain - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153678614 chrX:153678615 nonsynonymous SNV 0.982 4 22 hm5C_associated_SNPs_115907 0 0 1 0 2 FAM50A chrX:153678557 3'AG 153678557 Downstream 59bp
chrX 153678615 153678615 1 + C T SKCM 153678614 + 153678594 153678634 41 AGAAGAACAAGCACATCTTTCCCGCCAGCCGCTGGGAACCC AGAAGAACAAGCACATCTTTCTCGCCAGCCGCTGGGAACCC < 41bp 0.47426913657859 0.728405324503518 0.2793628 0.17872703 prediction 0.456810649007037 Functional Gain - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153678614 chrX:153678615 nonsynonymous SNV 0.982 4 22 hm5C_associated_SNPs_115907 0 0 1 0 2 FAM50A chrX:153678667 5'GT 153678667 Upstream 53bp
chr20 47682942 47682942 1 + C A KIRC 47682941 + 47682921 47682961 41 TTATTGGCAGAGAAGATTTTCCACAGAAATGGCCTGACTTG TTATTGGCAGAGAAGATTTTCAACAGAAATGGCCTGACTTG < 41bp 0.480870381830382 0.728402631148531 0.07521874 0.16715744 prediction 0.456805262297063 Functional Gain - CSE1L ENSG00000124207 CDS Human protein_coding chr20:47682941 chr20:47682942 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_115909 0 0 1 0 1 CSE1L chr20:47682902 3'AG 47682902 Downstream 41bp
chr11 27077102 27077102 1 + A G ESCA 27077099 + 27077079 27077119 41 GAGAGACAACTGTCCGTGCTCTGATTGCTACCTGGATTCCG GAGAGACAACTGTCCGTGCTCTGGTTGCTACCTGGATTCCG < 41bp 0.53827001418613 0.766665434253139 0.09994462 0.11739662 prediction 0.456790840134019 Functional Gain - BBOX1 ENSG00000129151 CDS Human protein_coding chr11:27077099 chr11:27077102 nonsynonymous SNV 0.298 1 24 hm5C_associated_SNPs_115910 0 0 0 0 1 BBOX1 chr11:27077196 5'GT 27077196 Upstream 95bp
chr11 70189925 70189925 1 + A G SKCM 70189922 + 70189902 70189942 41 GCTCAGTTGACCTGCTATCGCCCAGCGGGCAGGCCGACGCG GCTCAGTTGACCTGCTATCGCCCGGCGGGCAGGCCGACGCG < 41bp 0.559784532813007 0.7881791669356 0.21996024 0.6725104 prediction 0.456789268245185 Functional Gain - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70189922 chr11:70189925 nonsynonymous SNV 0.118 0 24 hm5C_associated_SNPs_115911 0 0 1 0 1 PPFIA1 chr11:70189998 5'GT 70189998 Upstream 74bp
chr16 56938371 56938371 1 + T C BLCA 56938369 + 56938349 56938389 41 TCCCGAGACGCTGCTCTCATCGTCATGTAAGTAGTGCCCGG TCCCGAGACGCTGCTCTCATCGCCATGTAAGTAGTGCCCGG < 41bp 0.602513826895061 0.830888324118319 0.32784507 0.86422765 prediction 0.456748994446514 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56938369 chr16:56938371 nonsynonymous SNV 0.456 2 23 hm5C_associated_SNPs_115916 0 0 1 0 2 SLC12A3 chr16:56938307 3'AG 56938307 Downstream 65bp
chr16 56938371 56938371 1 + T C BLCA 56938369 + 56938349 56938389 41 TCCCGAGACGCTGCTCTCATCGTCATGTAAGTAGTGCCCGG TCCCGAGACGCTGCTCTCATCGCCATGTAAGTAGTGCCCGG < 41bp 0.602513826895061 0.830888324118319 0.32784507 0.86422765 prediction 0.456748994446514 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56938369 chr16:56938371 nonsynonymous SNV 0.456 2 23 hm5C_associated_SNPs_115916 0 0 1 0 2 SLC12A3 chr16:56938374 5'GT 56938374 Upstream 4bp
chr3 10319986 10319986 1 + C T UCEC 10319985 + 10319965 10320005 41 ATTGCTTCACCGGCAGCTACCCGGTCATTGAGCCCCTGCTG ATTGCTTCACCGGCAGCTACCTGGTCATTGAGCCCCTGCTG < 41bp 0.490428458018292 0.728363075513479 0.8908431 0.3955649 prediction 0.456726151026958 Functional Gain - TATDN2 ENSG00000157014;ENSG00000272410 CDS Human other chr3:10319985 chr3:10319986 nonsynonymous SNV 0.995 0 22 hm5C_associated_SNPs_115921 0 0 1 0 1 TATDN2 chr3:10319963 3'AG 10319963 Downstream 24bp
chr19 38795504 38795504 1 + A G rs575882929 38795501 + 38795481 38795521 41 ACAGTCCCACGCTGCTGGCTCCAAGCAGCACGAGAGCATCC ACAGTCCCACGCTGCTGGCTCCAGGCAGCACGAGAGCATCC < 41bp 0.480977392663367 0.728355322610496 0.1297819 0.50905734 prediction 0.456710645220992 Functional Gain - C19orf33 ENSG00000167644;ENSG00000267748 CDS Human other chr19:38795501 chr19:38795504 nonsynonymous SNV 0.061 1 24 hm5C_associated_SNPs_115924 0 0 0 0 1 C19orf33 chr19:38795485 3'AG 38795485 Downstream 20bp
chr22 50319191 50319191 1 + C T UCEC 50319190 + 50319170 50319210 41 AAACGGAAGATGCCTGTGTGCCGCCGGCAGAGGCTGGTGAG AAACGGAAGATGCCTGTGTGCTGCCGGCAGAGGCTGGTGAG < 41bp 0.503729296643803 0.732080489262949 0.35283142 0.30949777 prediction 0.456702385238293 Functional Gain - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50319190 chr22:50319191 nonsynonymous SNV 0.002 3 22 hm5C_associated_SNPs_115926 0 0 1 0 1 CRELD2 chr22:50319205 5'GT 50319205 Upstream 15bp
chr18 670720 670720 1 + C A OV 670716 + 670696 670736 41 TCCTCTGATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGT TCCTCTGATGGCGCTGCCTCCATGACATGCCCTCTGCCAGT < 41bp 0.310669517155686 0.728349166782112 0.29031366 0.08318424 prediction 0.456698333564224 Functional Gain - TYMS ENSG00000176890 CDS Human protein_coding chr18:670716 chr18:670720 stopgain 0.989 1 25 hm5C_associated_SNPs_115927 0 0 1 0 1 TYMS chr18:670692 3'AG 670692 Downstream 29bp
chr3 50222238 50222238 1 + C T SKCM 50222237 + 50222217 50222257 41 GGGCGCTATGAGGTGCTTTTCCTGGGCACAGGTACCCACTG GGGCGCTATGAGGTGCTTTTCTTGGGCACAGGTACCCACTG < 41bp 0.535179610239751 0.76352219529821 0.8587775 0.30128258 prediction 0.456685170116919 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50222237 chr3:50222238 synonymous SNV . 0 22 hm5C_associated_SNPs_115930 0 0 1 0 1 SEMA3F chr3:50222247 5'GT 50222247 Upstream 10bp
chr10 72513721 72513721 1 + A G COAD 72513718 + 72513698 72513738 41 GAGGCCCGACGGCCCTGTCTCCGAGTGCCCTGCCCAGCCCA GAGGCCCGACGGCCCTGTCTCCGGGTGCCCTGCCCAGCCCA < 41bp 0.578595905464479 0.806934031552141 0.9446043 0.96353483 prediction 0.456676252175323 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72513718 chr10:72513721 synonymous SNV . 0 24 hm5C_associated_SNPs_115933 0 0 0 0 1 ADAMTS14 chr10:72513763 5'GT 72513763 Upstream 43bp
chr2 106690357 106690357 1 + A G UCEC 106690354 + 106690334 106690374 41 GATTTCAGCACCTGTTCCAACTAAGACTAAAGTGGCCGTTG GATTTCAGCACCTGTTCCAACTAGGACTAAAGTGGCCGTTG < 41bp 0.488316560662372 0.72830817873228 0.18034235 0.2262367 prediction 0.456616357464561 Functional Gain - C2orf40 ENSG00000119147 CDS Human protein_coding chr2:106690354 chr2:106690357 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_115939 0 0 0 0 1 C2orf40 chr2:106690342 3'AG 106690342 Downstream 16bp
chr11 57464290 57464290 1 + C T rs183544157 57464289 + 57464269 57464309 41 CTACCATGTACAAGTATCGGCCGGGTTACAGTAGCAGCAGT CTACCATGTACAAGTATCGGCTGGGTTACAGTAGCAGCAGT < 41bp 0.482295352623507 0.728303137141259 0.27513605 0.2173402 prediction 0.456606274282518 Functional Gain - ZDHHC5 ENSG00000156599 CDS Human protein_coding chr11:57464289 chr11:57464290 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_115941 0 0 1 0 2 ZDHHC5 chr11:57464233 3'AG 57464233 Downstream 58bp
chr11 57464290 57464290 1 + C T rs183544157 57464289 + 57464269 57464309 41 CTACCATGTACAAGTATCGGCCGGGTTACAGTAGCAGCAGT CTACCATGTACAAGTATCGGCTGGGTTACAGTAGCAGCAGT < 41bp 0.482295352623507 0.728303137141259 0.27513605 0.2173402 prediction 0.456606274282518 Functional Gain - ZDHHC5 ENSG00000156599 CDS Human protein_coding chr11:57464289 chr11:57464290 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_115941 0 0 1 0 2 ZDHHC5 chr11:57464345 5'GT 57464345 Upstream 56bp
chr10 75561146 75561146 1 + C T CESC 75561145 + 75561125 75561165 41 GTGAATGCGATCCGGAGTGCCCGCAGCGCCTTCTGCCTGAC GTGAATGCGATCCGGAGTGCCTGCAGCGCCTTCTGCCTGAC < 41bp 0.563246728860118 0.791547654479249 0.18256393 0.4421919 prediction 0.456601851238263 Functional Gain - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75561145 chr10:75561146 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_115942 0 0 1 0 1 ZSWIM8 chr10:75561074 3'AG 75561074 Downstream 73bp
chr22 42273401 42273401 1 + C T UCEC 42273400 + 42273380 42273420 41 CACCCACACTCAGGCTCTGGCCGCAGTGTCCTGTCATTCGA CACCCACACTCAGGCTCTGGCTGCAGTGTCCTGTCATTCGA < 41bp 0.58960866885677 0.817908578508056 0.25336447 0.274505 prediction 0.456599819302572 Functional Gain - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42273400 chr22:42273401 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_115943 0 0 1 0 1 SREBF2 chr22:42273425 5'GT 42273425 Upstream 25bp
chr17 1657459 1657459 1 + C G rs148395057 1657458 + 1657438 1657478 41 CCCAGACCTGCGTGGGATCTCCGAGCAGAGCCTGGTGGTGT CCCAGACCTGCGTGGGATCTCGGAGCAGAGCCTGGTGGTGT < 41bp 0.658639234337647 0.886937609267976 0.8875967 0.9279406 prediction 0.456596749860659 Functional Gain - SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1657458 chr17:1657459 synonymous SNV . 0 22 hm5C_associated_SNPs_115944 0 0 1 0 1 SERPINF2 chr17:1657416 3'AG 1657416 Downstream 44bp
chr4 1346896 1346896 1 + C A UCEC 1346895 + 1346875 1346915 41 TGGTGCCTTTTGACTTTGACCCGAACCCGGAGACGGAATCC TGGTGCCTTTTGACTTTGACCAGAACCCGGAGACGGAATCC < 41bp 0.461954146212955 0.728288638647371 0.29125425 0.58137375 prediction 0.456577277294741 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1346895 chr4:1346896 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_115946 0 0 1 0 1 UVSSA chr4:1346818 3'AG 1346818 Downstream 79bp
chr14 23313912 23313912 1 + A G STAD 23313909 + 23313889 23313929 41 AAGCACATTAAGGAGCTGGGCCGAGGGCTGCCTACCGACAA AAGCACATTAAGGAGCTGGGCCGGGGGCTGCCTACCGACAA < 41bp 0.491180637101164 0.728283433152385 0.7631054 0.9144264 prediction 0.45656686630477 Functional Gain - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23313909 chr14:23313912 synonymous SNV . 0 24 hm5C_associated_SNPs_115947 0 0 0 0 2 MMP14 chr14:23313839 3'AG 23313839 Downstream 74bp
chr14 23313912 23313912 1 + A G STAD 23313909 + 23313889 23313929 41 AAGCACATTAAGGAGCTGGGCCGAGGGCTGCCTACCGACAA AAGCACATTAAGGAGCTGGGCCGGGGGCTGCCTACCGACAA < 41bp 0.491180637101164 0.728283433152385 0.7631054 0.9144264 prediction 0.45656686630477 Functional Gain - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23313909 chr14:23313912 synonymous SNV . 0 24 hm5C_associated_SNPs_115947 0 0 0 0 2 MMP14 chr14:23313989 5'GT 23313989 Upstream 78bp
chr8 21955034 21955034 1 + C G rs190462850 21955033 + 21955013 21955053 41 GTCCCTGGCCTCAGTACCCCCCAGGCATGCGGCAGCAGGTG GTCCCTGGCCTCAGTACCCCCGAGGCATGCGGCAGCAGGTG < 41bp 0.396682704862331 0.728283237353708 0.45754156 0.8976953 prediction 0.456566474707417 Functional Gain - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21955033 chr8:21955034 nonsynonymous SNV 0.596 4 22 hm5C_associated_SNPs_115948 0 0 1 1 2 FAM160B2 chr8:21955027 3'AG 21955027 Downstream 8bp
chr8 21955034 21955034 1 + C G rs190462850 21955033 + 21955013 21955053 41 GTCCCTGGCCTCAGTACCCCCCAGGCATGCGGCAGCAGGTG GTCCCTGGCCTCAGTACCCCCGAGGCATGCGGCAGCAGGTG < 41bp 0.396682704862331 0.728283237353708 0.45754156 0.8976953 prediction 0.456566474707417 Functional Gain - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21955033 chr8:21955034 nonsynonymous SNV 0.596 4 22 hm5C_associated_SNPs_115948 0 0 1 1 2 FAM160B2 chr8:21955131 5'GT 21955131 Upstream 98bp
chr16 68328627 68328627 1 + C T CESC 68328626 + 68328606 68328646 41 AGGTTGTTCTTCGTGGGCTCCCGGGAGGGCCACCTACCGGA AGGTTGTTCTTCGTGGGCTCCTGGGAGGGCCACCTACCGGA < 41bp 0.551936881103889 0.780216652096885 0.9296606 0.92359364 prediction 0.456559541985993 Functional Gain - SLC7A6 ENSG00000103064 CDS Human protein_coding chr16:68328626 chr16:68328627 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_115950 0 0 1 0 2 SLC7A6 chr16:68328608 3'AG 68328608 Downstream 20bp
chr16 68328627 68328627 1 + C T CESC 68328626 + 68328606 68328646 41 AGGTTGTTCTTCGTGGGCTCCCGGGAGGGCCACCTACCGGA AGGTTGTTCTTCGTGGGCTCCTGGGAGGGCCACCTACCGGA < 41bp 0.551936881103889 0.780216652096885 0.9296606 0.92359364 prediction 0.456559541985993 Functional Gain - SLC7A6 ENSG00000103064 CDS Human protein_coding chr16:68328626 chr16:68328627 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_115950 0 0 1 0 2 SLC7A6 chr16:68328704 5'GT 68328704 Upstream 78bp
chr7 44079240 44079240 1 - A G rs559240810 44079242 - 44079222 44079262 41 GCAGTCCAGAACGTGGGCAACATGGACACGCCGGCTTCCAG GCAGTCCAGAACGTGGGCAACACGGACACGCCGGCTTCCAG < 41bp 0.530758533090818 0.759037862244349 0.49999443 0.6460847 prediction 0.456558658307062 Functional Gain - RASA4CP ENSG00000228903;ENSG00000235314 ncRNA_exonic Human other chr7:44079242 chr7:44079240 . . 0 23 hm5C_associated_SNPs_115951 0 0 0 0 1 RASA4CP chr7:44079262 3'AG 44079262 Downstream 23bp
chr19 46663936 46663936 1 + C G SKCM 46663935 + 46663915 46663955 41 TGTGGAGACAAGATCTACAACCCCTTGGAGCAGTGCTGTTA TGTGGAGACAAGATCTACAACGCCTTGGAGCAGTGCTGTTA < 41bp 0.405322261345503 0.728277563938174 0.015963614 0.037623882 prediction 0.456555127876348 Functional Gain - IGFL2 ENSG00000204866 CDS Human protein_coding chr19:46663935 chr19:46663936 nonsynonymous SNV 0.006 3 22 hm5C_associated_SNPs_115952 0 0 0 0 1 IGFL2 chr19:46663871 3'AG 46663871 Downstream 66bp
chr12 48888604 48888604 1 + T G rs144168660 48888602 + 48888582 48888622 41 AGCATAAGGCCTCCAGATTCCTTGATGACCCCAAAGTTGAG AGCATAAGGCCTCCAGATTCCTGGATGACCCCAAAGTTGAG < 41bp 0.667213319975402 0.895488498766236 0.03428945 0.23910561 prediction 0.456550357581669 Functional Gain - C12orf54 ENSG00000177627 CDS Human protein_coding chr12:48888602 chr12:48888604 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_115953 0 0 0 0 1 C12orf54 chr12:48888581 3'AG 48888581 Downstream 24bp
chr15 76484365 76484365 1 + C A rs202140844 76484361 + 76484341 76484381 41 GCAGCAGGACCTGGACCTGGCTGCCGAGCGCGAAGCGGCGC GCAGCAGGACCTGGACCTGGCTGCAGAGCGCGAAGCGGCGC < 41bp 0.707797491890405 0.936069618167644 0.44209164 0.78200215 prediction 0.45654425255448 Functional Gain - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76484361 chr15:76484365 synonymous SNV . 0 25 hm5C_associated_SNPs_115955 0 0 0 0 1 TMEM266 chr15:76484309 3'AG 76484309 Downstream 57bp
chr11 120169019 120169019 1 + C A THCA 120169015 + 120168995 120169035 41 GACTCCCTGCAGCAGACCCTCTCCCATCGGCCATGCCACCT GACTCCCTGCAGCAGACCCTCTCCAATCGGCCATGCCACCT < 41bp 0.406791144738903 0.728272026038314 0.10446191 0.9572482 prediction 0.456544052076629 Functional Gain - POU2F3 ENSG00000137709 CDS Human protein_coding chr11:120169015 chr11:120169019 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_115956 0 0 0 0 2 POU2F3 chr11:120168974 3'AG 120168974 Downstream 46bp
chr11 120169019 120169019 1 + C A THCA 120169015 + 120168995 120169035 41 GACTCCCTGCAGCAGACCCTCTCCCATCGGCCATGCCACCT GACTCCCTGCAGCAGACCCTCTCCAATCGGCCATGCCACCT < 41bp 0.406791144738903 0.728272026038314 0.10446191 0.9572482 prediction 0.456544052076629 Functional Gain - POU2F3 ENSG00000137709 CDS Human protein_coding chr11:120169015 chr11:120169019 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_115956 0 0 0 0 2 POU2F3 chr11:120169099 5'GT 120169099 Upstream 81bp
chr1 114515703 114515703 1 + C A THCA 114515702 + 114515682 114515722 41 AGAAGCAGCAACCCAGCCCCCCGCAGGCAGCAGGCGTTTGT AGAAGCAGCAACCCAGCCCCCAGCAGGCAGCAGGCGTTTGT < 41bp 0.482713058217138 0.728259076407685 0.19545275 0.3019477 prediction 0.456518152815371 Functional Gain - HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114515702 chr1:114515703 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_115959 0 0 1 0 1 HIPK1 chr1:114515646 3'AG 114515646 Downstream 58bp
chr11 88924517 88924517 1 + A G GBM 88924514 + 88924494 88924534 41 CAGCTGATGTAGAATTTTGCCTGAGTTTGACCCAATATGAA CAGCTGATGTAGAATTTTGCCTGGGTTTGACCCAATATGAA < 41bp 0.520828180100991 0.749086521259175 0.11551818 0.32037076 prediction 0.456516682316369 Functional Gain - TYR ENSG00000077498 CDS Human protein_coding chr11:88924514 chr11:88924517 nonsynonymous SNV 0.888 1 24 hm5C_associated_SNPs_115961 0 0 0 0 1 TYR chr11:88924586 5'GT 88924586 Upstream 70bp
chr1 10659404 10659404 1 + C A UCEC 10659400 + 10659380 10659420 41 GGTGGTTCCTGTCCAGCCCCCTCACCTCATATCTCAGCCAT GGTGGTTCCTGTCCAGCCCCCTCAACTCATATCTCAGCCAT < 41bp 0.301938638109755 0.728253468982866 0.16467774 0.22952497 prediction 0.456506937965732 Functional Gain - PEX14 ENSG00000142655 CDS Human protein_coding chr1:10659400 chr1:10659404 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_115962 0 0 1 0 1 PEX14 chr1:10659423 5'GT 10659423 Upstream 20bp
chr7 99720504 99720504 1 + T C UCEC 99720502 + 99720482 99720522 41 GAGCTTTGGGATGAGCCCAGCGTGGAGGTCACATACCTCAA GAGCTTTGGGATGAGCCCAGCGCGGAGGTCACATACCTCAA < 41bp 0.578021966584492 0.806271924972036 0.3732112 0.5831327 prediction 0.456499916775087 Functional Gain - CNPY4 ENSG00000166997 CDS Human protein_coding chr7:99720502 chr7:99720504 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_115963 0 0 0 0 1 CNPY4 chr7:99720529 5'GT 99720529 Upstream 26bp
chr18 77659086 77659086 1 + T C BRCA 77659084 + 77659064 77659104 41 AGCCTGTTCGTGCTGGAGACCGTGTGCGTGGCCTGGTTCTC AGCCTGTTCGTGCTGGAGACCGCGTGCGTGGCCTGGTTCTC < 41bp 0.493491210096837 0.728247117446587 0.3351788 0.49646357 prediction 0.456494234893174 Functional Gain - KCNG2 ENSG00000178342 CDS Human protein_coding chr18:77659084 chr18:77659086 nonsynonymous SNV 0.978 4 23 hm5C_associated_SNPs_115967 0 0 0 0 1 KCNG2 chr18:77659040 3'AG 77659040 Downstream 47bp
chr10 102738746 102738746 1 + C A SARC 102738745 + 102738725 102738765 41 ACTCAGAGCCGCAGCAGTCACCGTGTGGCCCGTGTGGCTCG ACTCAGAGCCGCAGCAGTCACAGTGTGGCCCGTGTGGCTCG < 41bp 0.592650900422247 0.820896288978512 0.4780957 0.8221796 prediction 0.45649077711253 Functional Gain - SEMA4G ENSG00000055950;ENSG00000095539 CDS Human protein_coding chr10:102738745 chr10:102738746 nonsynonymous SNV 0.980 3 22 hm5C_associated_SNPs_115968 0 0 1 0 1 SEMA4G chr10:102738775 5'GT 102738775 Upstream 30bp
chr19 10394744 10394744 1 + C T STAD 10394743 + 10394723 10394763 41 CCCCCACAACTTGTCAGCCCCCGGGTCCTAGAGGTGGACAC CCCCCACAACTTGTCAGCCCCTGGGTCCTAGAGGTGGACAC < 41bp 0.538954504207764 0.767188387537736 0.3671779 0.5050127 prediction 0.456467766659944 Functional Gain - ICAM1 ENSG00000090339 CDS Human protein_coding chr19:10394743 chr19:10394744 nonsynonymous SNV 0.000 3 22 hm5C_associated_SNPs_115971 0 0 1 0 1 ICAM1 chr19:10394709 3'AG 10394709 Downstream 36bp
chr17 47583706 47583706 1 + C T SKCM 47583705 + 47583685 47583725 41 GCGCGACCGAGCCGTGCAAGCCGTGCACCGAGTGCGTGGGG GCGCGACCGAGCCGTGCAAGCTGTGCACCGAGTGCGTGGGG < 41bp 0.507108254197905 0.735341393779907 0.3683862 0.2462647 prediction 0.456466279164003 Functional Gain - NGFR ENSG00000064300 CDS Human protein_coding chr17:47583705 chr17:47583706 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_115972 0 0 0 0 1 NGFR chr17:47583661 3'AG 47583661 Downstream 46bp
chr20 31649630 31649630 1 + C T UCEC 31649629 + 31649609 31649649 41 AGATGCTCTTCAAGGTGCTTCCGGGACTGGTGAGTGTGCGG AGATGCTCTTCAAGGTGCTTCTGGGACTGGTGAGTGTGCGG < 41bp 0.499966947886426 0.728232957572646 0.6215062 0.2558928 prediction 0.456465915145292 Functional Gain - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31649629 chr20:31649630 nonsynonymous SNV 0.797 4 22 hm5C_associated_SNPs_115973 0 0 0 0 2 BPIFB3 chr20:31649574 3'AG 31649574 Downstream 57bp
chr20 31649630 31649630 1 + C T UCEC 31649629 + 31649609 31649649 41 AGATGCTCTTCAAGGTGCTTCCGGGACTGGTGAGTGTGCGG AGATGCTCTTCAAGGTGCTTCTGGGACTGGTGAGTGTGCGG < 41bp 0.499966947886426 0.728232957572646 0.6215062 0.2558928 prediction 0.456465915145292 Functional Gain - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31649629 chr20:31649630 nonsynonymous SNV 0.797 4 22 hm5C_associated_SNPs_115973 0 0 0 0 2 BPIFB3 chr20:31649637 5'GT 31649637 Upstream 8bp
chr13 50087244 50087244 1 + C A LGG 50087243 + 50087223 50087263 41 AGGATCAGGATCCACTTAATCCTGATAGAAGTTTTGATGTG AGGATCAGGATCCACTTAATCATGATAGAAGTTTTGATGTG < 41bp 0.555735487252912 0.78396285029496 0.07607508 0.48265254 prediction 0.456454726084096 Functional Gain - PHF11;SETDB2-PHF11 ENSG00000136147 CDS Human protein_coding chr13:50087243 chr13:50087244 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_115974 0 0 1 0 2 PHF11;SETDB2-PHF11 chr13:50087195 3'AG 50087195 Downstream 50bp
chr13 50087244 50087244 1 + C A LGG 50087243 + 50087223 50087263 41 AGGATCAGGATCCACTTAATCCTGATAGAAGTTTTGATGTG AGGATCAGGATCCACTTAATCATGATAGAAGTTTTGATGTG < 41bp 0.555735487252912 0.78396285029496 0.07607508 0.48265254 prediction 0.456454726084096 Functional Gain - PHF11;SETDB2-PHF11 ENSG00000136147 CDS Human protein_coding chr13:50087243 chr13:50087244 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_115974 0 0 1 0 2 PHF11;SETDB2-PHF11 chr13:50087302 5'GT 50087302 Upstream 59bp
chr16 20430677 20430677 1 + C T rs186088988 20430676 + 20430656 20430696 41 AAGGGTGGATGCCATCAGTGCCGAATGCCCCTCCCTCCAGA AAGGGTGGATGCCATCAGTGCTGAATGCCCCTCCCTCCAGA < 41bp 0.551527565590101 0.779750435784332 0.0851953 0.09444451 prediction 0.456445740388463 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20430676 chr16:20430677 synonymous SNV . 0 22 hm5C_associated_SNPs_115976 0 0 1 0 1 ACSM5 chr16:20430757 5'GT 20430757 Upstream 81bp
chr19 10798340 10798340 1 + C T SKCM 10798339 + 10798319 10798359 41 ACTCGAACTCCTACAACTCTCCCGGGGGCGGGGGCGGATCC ACTCGAACTCCTACAACTCTCTCGGGGGCGGGGGCGGATCC < 41bp 0.585616560489256 0.813833875998492 0.7860376 0.5581867 prediction 0.456434631018472 Functional Gain - ILF3 ENSG00000129351 CDS Human protein_coding chr19:10798339 chr19:10798340 nonsynonymous SNV 0.037 1 22 hm5C_associated_SNPs_115978 0 0 1 0 1 ILF3 chr19:10798384 5'GT 10798384 Upstream 45bp
chr5 14681702 14681702 1 + C T SKCM 14681701 + 14681681 14681721 41 CTGCCGCCCTGGCTGCAGGACCCGGAGCTCATGCTGGTACG CTGCCGCCCTGGCTGCAGGACTCGGAGCTCATGCTGGTACG < 41bp 0.471691677489341 0.728213455386982 0.34071898 0.16828439 prediction 0.456426910773964 Functional Gain - OTULIN ENSG00000154124 CDS Human protein_coding chr5:14681701 chr5:14681702 nonsynonymous SNV 0.687 0 22 hm5C_associated_SNPs_115979 0 0 1 0 1 OTULIN chr5:14681716 5'GT 14681716 Upstream 15bp
chr19 8117959 8117959 1 + T C CESC 8117957 + 8117937 8117977 41 AACCTGTGGCTCCTGGCCTGCCTGGTGGCCGGCTTCCTGGG AACCTGTGGCTCCTGGCCTGCCCGGTGGCCGGCTTCCTGGG < 41bp 0.558561691689685 0.786773748732351 0.39790857 0.43983555 prediction 0.456424114085331 Functional Gain - CCL25 ENSG00000131142 CDS Human protein_coding chr19:8117957 chr19:8117959 nonsynonymous SNV 0.312 3 23 hm5C_associated_SNPs_115981 0 0 0 0 1 CCL25 chr19:8118006 5'GT 8118006 Upstream 48bp
chr6 43226934 43226934 1 + C A LUSC 43226933 + 43226913 43226953 41 GTCCCCACCTTGTCCCCCACCCCGGGGGTCCTGAGGCTGAA GTCCCCACCTTGTCCCCCACCACGGGGGTCCTGAGGCTGAA < 41bp 0.46045846254495 0.728201350537205 0.1526292 0.274746 prediction 0.456402701074411 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43226933 chr6:43226934 nonsynonymous SNV 0.950 1 22 hm5C_associated_SNPs_115982 0 0 0 0 1 TTBK1 chr6:43227007 5'GT 43227007 Upstream 74bp
chr3 40442420 40442420 1 + C T SKCM 40442419 + 40442399 40442439 41 GGATGCCGGGTCTTCAAGAACCACAGTCTACGTGTATCAAT GGATGCCGGGTCTTCAAGAACTACAGTCTACGTGTATCAAT < 41bp 0.461168192223705 0.728198077176342 0.22453856 0.37817174 prediction 0.456396154352684 Functional Gain - ENTPD3 ENSG00000168032 CDS Human protein_coding chr3:40442419 chr3:40442420 synonymous SNV . 0 22 hm5C_associated_SNPs_115983 0 0 0 0 2 ENTPD3 chr3:40442385 3'AG 40442385 Downstream 36bp
chr3 40442420 40442420 1 + C T SKCM 40442419 + 40442399 40442439 41 GGATGCCGGGTCTTCAAGAACCACAGTCTACGTGTATCAAT GGATGCCGGGTCTTCAAGAACTACAGTCTACGTGTATCAAT < 41bp 0.461168192223705 0.728198077176342 0.22453856 0.37817174 prediction 0.456396154352684 Functional Gain - ENTPD3 ENSG00000168032 CDS Human protein_coding chr3:40442419 chr3:40442420 synonymous SNV . 0 22 hm5C_associated_SNPs_115983 0 0 0 0 2 ENTPD3 chr3:40442502 5'GT 40442502 Upstream 83bp
chr8 99158878 99158878 1 + T C UCEC 99158875 + 99158855 99158895 41 TTTATCTGGAACCAAGATATCTGTAAGAGTGTCACAGAGAA TTTATCTGGAACCAAGATATCTGCAAGAGTGTCACAGAGAA < 41bp 0.509132287657617 0.737329752715884 0.100919336 0.15135619 prediction 0.456394930116534 Functional Gain - POP1 ENSG00000104356 CDS Human protein_coding chr8:99158875 chr8:99158878 synonymous SNV . 0 24 hm5C_associated_SNPs_115984 0 0 1 0 2 POP1 chr8:99158796 3'AG 99158796 Downstream 83bp
chr8 99158878 99158878 1 + T C UCEC 99158875 + 99158855 99158895 41 TTTATCTGGAACCAAGATATCTGTAAGAGTGTCACAGAGAA TTTATCTGGAACCAAGATATCTGCAAGAGTGTCACAGAGAA < 41bp 0.509132287657617 0.737329752715884 0.100919336 0.15135619 prediction 0.456394930116534 Functional Gain - POP1 ENSG00000104356 CDS Human protein_coding chr8:99158875 chr8:99158878 synonymous SNV . 0 24 hm5C_associated_SNPs_115984 0 0 1 0 2 POP1 chr8:99158911 5'GT 99158911 Upstream 34bp
chr8 104225196 104225196 1 + C A ESCA 104225192 + 104225172 104225212 41 CAATGGTGTGCCCCGATCTACAGCCCCAGGTGGAATACCCA CAATGGTGTGCCCCGATCTACAGCACCAGGTGGAATACCCA < 41bp 0.304318792314933 0.728189092106581 0.11068705 0.15648875 prediction 0.456378184213162 Functional Gain - BAALC ENSG00000164929 CDS Human protein_coding chr8:104225192 chr8:104225196 synonymous SNV . 0 25 hm5C_associated_SNPs_115987 0 0 0 0 1 BAALC chr8:104225147 3'AG 104225147 Downstream 50bp
chr20 3025437 3025437 1 + C T SKCM 3025436 + 3025416 3025456 41 CTGGGAGGGCAGGACCACGGCCCAGTGGTCCCTTCACAGGA CTGGGAGGGCAGGACCACGGCTCAGTGGTCCCTTCACAGGA < 41bp 0.553820835412466 0.78200219932181 0.14442068 0.1196664 prediction 0.456362727818689 Functional Gain - GNRH2 ENSG00000125787 CDS Human protein_coding chr20:3025436 chr20:3025437 synonymous SNV . 0 22 hm5C_associated_SNPs_115991 0 0 0 0 3 GNRH2 chr20:3025346 3'AG 3025346 Downstream 92bp
chr20 3025437 3025437 1 + C T SKCM 3025436 + 3025416 3025456 41 CTGGGAGGGCAGGACCACGGCCCAGTGGTCCCTTCACAGGA CTGGGAGGGCAGGACCACGGCTCAGTGGTCCCTTCACAGGA < 41bp 0.553820835412466 0.78200219932181 0.14442068 0.1196664 prediction 0.456362727818689 Functional Gain - GNRH2 ENSG00000125787 CDS Human protein_coding chr20:3025436 chr20:3025437 synonymous SNV . 0 22 hm5C_associated_SNPs_115991 0 0 0 0 3 GNRH2 chr20:3025349 3'AG 3025349 Downstream 89bp
chr20 3025437 3025437 1 + C T SKCM 3025436 + 3025416 3025456 41 CTGGGAGGGCAGGACCACGGCCCAGTGGTCCCTTCACAGGA CTGGGAGGGCAGGACCACGGCTCAGTGGTCCCTTCACAGGA < 41bp 0.553820835412466 0.78200219932181 0.14442068 0.1196664 prediction 0.456362727818689 Functional Gain - GNRH2 ENSG00000125787 CDS Human protein_coding chr20:3025436 chr20:3025437 synonymous SNV . 0 22 hm5C_associated_SNPs_115991 0 0 0 0 3 GNRH2 chr20:3025482 5'GT 3025482 Upstream 46bp
chr20 37623522 37623522 1 + A G COAD 37623519 + 37623499 37623539 41 AGCTTCAGCCACTCTGGATGCAGACGTAAGAGCCTTGCCTC AGCTTCAGCCACTCTGGATGCAGGCGTAAGAGCCTTGCCTC < 41bp 0.553917052316024 0.782091162545518 0.55424774 0.887324 prediction 0.456348220458988 Functional Gain - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37623519 chr20:37623522 nonsynonymous SNV 0.815 1 24 hm5C_associated_SNPs_115993 0 0 1 0 2 DHX35 chr20:37623464 3'AG 37623464 Downstream 59bp
chr20 37623522 37623522 1 + A G COAD 37623519 + 37623499 37623539 41 AGCTTCAGCCACTCTGGATGCAGACGTAAGAGCCTTGCCTC AGCTTCAGCCACTCTGGATGCAGGCGTAAGAGCCTTGCCTC < 41bp 0.553917052316024 0.782091162545518 0.55424774 0.887324 prediction 0.456348220458988 Functional Gain - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37623519 chr20:37623522 nonsynonymous SNV 0.815 1 24 hm5C_associated_SNPs_115993 0 0 1 0 2 DHX35 chr20:37623523 5'GT 37623523 Upstream 2bp
chr16 30770347 30770347 1 - G C GBM 30770348 - 30770328 30770368 41 AACTAGAGACAGTGGCCCCACCAGAGCCAGAGCCAAGTGAG AACTAGAGACAGTGGCCCCACGAGAGCCAGAGCCAAGTGAG < 41bp 0.648625137569604 0.876796279815474 0.21977693 0.651354 prediction 0.456342284491741 Functional Gain - CCDC189 ENSG00000196118 CDS Human protein_coding chr16:30770348 chr16:30770347 nonsynonymous SNV 0.435 0 22 hm5C_associated_SNPs_115994 0 0 0 0 2 CCDC189 chr16:30770333 5'GT 30770333 Upstream 15bp
chr16 30770347 30770347 1 - G C GBM 30770348 - 30770328 30770368 41 AACTAGAGACAGTGGCCCCACCAGAGCCAGAGCCAAGTGAG AACTAGAGACAGTGGCCCCACGAGAGCCAGAGCCAAGTGAG < 41bp 0.648625137569604 0.876796279815474 0.21977693 0.651354 prediction 0.456342284491741 Functional Gain - CCDC189 ENSG00000196118 CDS Human protein_coding chr16:30770348 chr16:30770347 nonsynonymous SNV 0.435 0 22 hm5C_associated_SNPs_115994 0 0 0 0 2 CCDC189 chr16:30770422 3'AG 30770422 Downstream 76bp
chr8 144126193 144126193 1 + C A COAD 144126189 + 144126169 144126209 41 GAGGCCCCTTCCAAGACCGCCAAGCATCTGTAGCAGCGCAG GAGGCCCCTTCCAAGACCGCCAAGAATCTGTAGCAGCGCAG < 41bp 0.330208332948967 0.72816125923628 0.22738236 0.100693196 prediction 0.456322518472559 Functional Gain - C8orf31 ENSG00000177335 CDS Human processed_transcript chr8:144126189 chr8:144126193 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_115998 0 0 0 0 1 C8orf31 chr8:144126234 5'GT 144126234 Upstream 42bp
chr16 30997082 30997082 1 + C A rs150464212 30997081 + 30997061 30997101 41 ATGCTGCTGCAGCGGGAGCCCCGGCTCGGGGAGCTGCGGGT ATGCTGCTGCAGCGGGAGCCCAGGCTCGGGGAGCTGCGGGT < 41bp 0.571375419804373 0.799531990115386 0.65851325 0.8617467 prediction 0.456313140622026 Functional Gain - HSD3B7 ENSG00000099377;ENSG00000268863 CDS Human other chr16:30997081 chr16:30997082 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_116001 0 0 1 0 1 HSD3B7 chr16:30997145 5'GT 30997145 Upstream 64bp
chr15 80767490 80767490 1 + T G LIHC 80767487 + 80767467 80767507 41 GTCAGAGTGGTTTGGGAGCACACTGTATGAACAGGTGCATC GTCAGAGTGGTTTGGGAGCACACGGTATGAACAGGTGCATC < 41bp 0.32982984496277 0.72815319479352 0.08887434 0.08148828 prediction 0.45630638958704 Functional Gain - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80767487 chr15:80767490 nonsynonymous SNV 0.848 4 24 hm5C_associated_SNPs_116004 0 0 1 0 1 ARNT2 chr15:80767564 5'GT 80767564 Upstream 75bp
chr18 72238471 72238471 1 + T C SARC 72238469 + 72238449 72238489 41 CAGGAACCTTTGGTGGCATCCTTCATGAACCAATGGCTGAT CAGGAACCTTTGGTGGCATCCTCCATGAACCAATGGCTGAT < 41bp 0.406711930544864 0.728150912210771 0.30056542 0.9742535 prediction 0.456301824421541 Functional Gain - CNDP1 ENSG00000150656 CDS Human protein_coding chr18:72238469 chr18:72238471 synonymous SNV . 0 23 hm5C_associated_SNPs_116005 0 0 0 0 2 CNDP1 chr18:72238421 3'AG 72238421 Downstream 51bp
chr18 72238471 72238471 1 + T C SARC 72238469 + 72238449 72238489 41 CAGGAACCTTTGGTGGCATCCTTCATGAACCAATGGCTGAT CAGGAACCTTTGGTGGCATCCTCCATGAACCAATGGCTGAT < 41bp 0.406711930544864 0.728150912210771 0.30056542 0.9742535 prediction 0.456301824421541 Functional Gain - CNDP1 ENSG00000150656 CDS Human protein_coding chr18:72238469 chr18:72238471 synonymous SNV . 0 23 hm5C_associated_SNPs_116005 0 0 0 0 2 CNDP1 chr18:72238505 5'GT 72238505 Upstream 35bp
chr19 41596335 41596335 1 + C T BRCA 41596334 + 41596314 41596354 41 AATATCGATCCCACCTTCTTCCTGAGCCGCACAGTCTCCAA AATATCGATCCCACCTTCTTCTTGAGCCGCACAGTCTCCAA < 41bp 0.554897958002579 0.783046563700614 0.047983825 0.07122195 prediction 0.456297211396071 Functional Gain - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41596334 chr19:41596335 synonymous SNV . 0 22 hm5C_associated_SNPs_116009 0 0 0 0 1 CYP2A13 chr19:41596309 3'AG 41596309 Downstream 27bp
chr12 119588985 119588985 1 + C T LGG 119588984 + 119588964 119589004 41 TCCCCAAATCCCAGGGCTTCCCCCAGGTACACCCAAAGCCG TCCCCAAATCCCAGGGCTTCCTCCAGGTACACCCAAAGCCG < 41bp 0.451865442086561 0.728134779430145 0.32056046 0.9585372 prediction 0.456269558860289 Functional Gain - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119588984 chr12:119588985 nonsynonymous SNV 0.953 1 22 hm5C_associated_SNPs_116010 0 0 1 0 1 SRRM4 chr12:119589025 5'GT 119589025 Upstream 41bp
chr3 111637979 111637979 1 + C T BLCA 111637978 + 111637958 111637998 41 TTGGCTGCAATGGAAGAAACCCGGATAGTCATTCTGAACAA TTGGCTGCAATGGAAGAAACCTGGATAGTCATTCTGAACAA < 41bp 0.556039475253467 0.78417144533283 0.29590186 0.18664202 prediction 0.456263940158726 Functional Gain - PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111637978 chr3:111637979 nonsynonymous SNV 0.494 4 22 hm5C_associated_SNPs_116014 0 0 1 0 2 PHLDB2 chr3:111637919 3'AG 111637919 Downstream 61bp
chr3 111637979 111637979 1 + C T BLCA 111637978 + 111637958 111637998 41 TTGGCTGCAATGGAAGAAACCCGGATAGTCATTCTGAACAA TTGGCTGCAATGGAAGAAACCTGGATAGTCATTCTGAACAA < 41bp 0.556039475253467 0.78417144533283 0.29590186 0.18664202 prediction 0.456263940158726 Functional Gain - PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111637978 chr3:111637979 nonsynonymous SNV 0.494 4 22 hm5C_associated_SNPs_116014 0 0 1 0 2 PHLDB2 chr3:111638062 5'GT 111638062 Upstream 84bp
chr5 71015228 71015228 1 + A G rs61730984 71015225 + 71015205 71015245 41 GAGGACGCCGAGCTCCAGCCCCGAGCCCTGGACATCTACTC GAGGACGCCGAGCTCCAGCCCCGGGCCCTGGACATCTACTC < 41bp 0.546449978652167 0.774581304656421 0.3052175 0.48196015 prediction 0.456262652008508 Functional Gain - CARTPT ENSG00000164326 CDS Human protein_coding chr5:71015225 chr5:71015228 synonymous SNV . 0 24 hm5C_associated_SNPs_116015 0 0 0 0 1 CARTPT chr5:71015279 5'GT 71015279 Upstream 52bp
chr5 43192421 43192421 1 + C A rs17243515 43192420 + 43192400 43192440 41 GCGCCCTCACCTCGGGACATCCACACACCGACCGCTCCTGC GCGCCCTCACCTCGGGACATCAACACACCGACCGCTCCTGC < 41bp 0.48704033565991 0.728120473771569 0.2571844 0.2780435 prediction 0.456240947543139 Functional Gain - NIM1K ENSG00000177453 UTR5 Human protein_coding chr5:43192420 chr5:43192421 . . 0 22 hm5C_associated_SNPs_116019 0 0 0 0 1 NIM1K chr5:43192513 5'GT 43192513 Upstream 93bp
chr1 215759936 215759936 1 + C T BRCA 215759935 + 215759915 215759955 41 ATGCAAAGGTGGTTGGAGGGCCACATGGAGACAAAGACAAA ATGCAAAGGTGGTTGGAGGGCTACATGGAGACAAAGACAAA < 41bp 0.458230424196084 0.728114369975632 0.22995576 0.4970875 prediction 0.456228739951264 Functional Gain - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215759935 chr1:215759936 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_116021 0 0 1 0 2 KCTD3 chr1:215759838 3'AG 215759838 Downstream 99bp
chr1 215759936 215759936 1 + C T BRCA 215759935 + 215759915 215759955 41 ATGCAAAGGTGGTTGGAGGGCCACATGGAGACAAAGACAAA ATGCAAAGGTGGTTGGAGGGCTACATGGAGACAAAGACAAA < 41bp 0.458230424196084 0.728114369975632 0.22995576 0.4970875 prediction 0.456228739951264 Functional Gain - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215759935 chr1:215759936 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_116021 0 0 1 0 2 KCTD3 chr1:215760028 5'GT 215760028 Upstream 93bp
chr5 161116278 161116278 1 + C A LUAD 161116274 + 161116254 161116294 41 TTCTAGGCTTACCATCAATGCTGACTGTCCCATGAGGCTGG TTCTAGGCTTACCATCAATGCTGAATGTCCCATGAGGCTGG < 41bp 0.311438356534357 0.728113297197557 0.036289573 0.37593728 prediction 0.456226594395115 Functional Gain - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161116274 chr5:161116278 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_116022 0 0 0 0 2 GABRA6 chr5:161116260 3'AG 161116260 Downstream 19bp
chr5 161116278 161116278 1 + C A LUAD 161116274 + 161116254 161116294 41 TTCTAGGCTTACCATCAATGCTGACTGTCCCATGAGGCTGG TTCTAGGCTTACCATCAATGCTGAATGTCCCATGAGGCTGG < 41bp 0.311438356534357 0.728113297197557 0.036289573 0.37593728 prediction 0.456226594395115 Functional Gain - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161116274 chr5:161116278 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_116022 0 0 0 0 2 GABRA6 chr5:161116342 5'GT 161116342 Upstream 65bp
chr7 31125006 31125006 1 + A G LIHC 31125003 + 31124983 31125023 41 AGGGCGATCTCCGTCTTCATCAAAGACTGGATTCTGTATGC AGGGCGATCTCCGTCTTCATCAAGGACTGGATTCTGTATGC < 41bp 0.561358846456959 0.789461286774873 0.8627567 0.9070131 prediction 0.456204880635827 Functional Gain - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31125003 chr7:31125006 synonymous SNV . 0 24 hm5C_associated_SNPs_116026 0 0 0 0 2 ADCYAP1R1 chr7:31124925 3'AG 31124925 Downstream 82bp
chr7 31125006 31125006 1 + A G LIHC 31125003 + 31124983 31125023 41 AGGGCGATCTCCGTCTTCATCAAAGACTGGATTCTGTATGC AGGGCGATCTCCGTCTTCATCAAGGACTGGATTCTGTATGC < 41bp 0.561358846456959 0.789461286774873 0.8627567 0.9070131 prediction 0.456204880635827 Functional Gain - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31125003 chr7:31125006 synonymous SNV . 0 24 hm5C_associated_SNPs_116026 0 0 0 0 2 ADCYAP1R1 chr7:31125057 5'GT 31125057 Upstream 52bp
chr19 47712468 47712468 1 + T C STAD 47712466 + 47712446 47712486 41 AACTTCTTCTTCTTCGATGGCATGAAGGGGAATGGGATTGT AACTTCTTCTTCTTCGATGGCACGAAGGGGAATGGGATTGT < 41bp 0.601958845381462 0.83005367305501 0.20901328 0.1477274 prediction 0.456189655347097 Functional Gain - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47712466 chr19:47712468 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_116029 0 0 1 1 1 SAE1 chr19:47712416 3'AG 47712416 Downstream 53bp
chr17 79966960 79966960 1 + C T LUSC 79966959 + 79966939 79966979 41 GGAGCCGGTGGTGTGCCACCCCGACCTGGAGGAGCGGCTGC GGAGCCGGTGGTGTGCCACCCTGACCTGGAGGAGCGGCTGC < 41bp 0.512518531250708 0.740605895021636 0.24047038 0.2067754 prediction 0.456174727541856 Functional Gain - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79966959 chr17:79966960 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_116030 0 0 1 0 1 ASPSCR1 chr17:79966913 3'AG 79966913 Downstream 48bp
chr11 64368345 64368345 1 + C T ACC 64368344 + 64368324 64368364 41 GCCAGTGCTGAGTGGCCTGGCCGCACTGCTTCTGCCCGAGA GCCAGTGCTGAGTGGCCTGGCTGCACTGCTTCTGCCCGAGA < 41bp 0.54820931448097 0.776293649119479 0.13816425 0.1757853 prediction 0.456168669277017 Functional Gain - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64368344 chr11:64368345 synonymous SNV . 0 22 hm5C_associated_SNPs_116031 0 0 0 0 1 SLC22A12 chr11:64368410 5'GT 64368410 Upstream 66bp
chr19 30936589 30936589 1 + C A LUSC 30936585 + 30936565 30936605 41 GGGTCGGAGGCGGCCTCTCCCAGACCGGGAGTGCCCAGGAG GGGTCGGAGGCGGCCTCTCCCAGAACGGGAGTGCCCAGGAG < 41bp 0.700042338084611 0.928117954183064 0.77218866 0.8067552 prediction 0.456151232196907 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30936585 chr19:30936589 nonsynonymous SNV 0.962 1 25 hm5C_associated_SNPs_116035 0 0 0 0 1 ZNF536 chr19:30936639 5'GT 30936639 Upstream 51bp
chr3 28304843 28304843 1 + C A COAD 28304842 + 28304822 28304862 41 TAAAATAATGAGAGAAAAGGCCAAAGAGAGGTGTTCTGAAC TAAAATAATGAGAGAAAAGGCAAAAGAGAGGTGTTCTGAAC < 41bp 0.562799246626065 0.790868712218144 0.09042671 0.5242386 prediction 0.456138931184157 Functional Gain - CMC1 ENSG00000187118 CDS Human protein_coding chr3:28304842 chr3:28304843 synonymous SNV . 0 22 hm5C_associated_SNPs_116037 0 0 1 0 2 CMC1 chr3:28304782 3'AG 28304782 Downstream 62bp
chr3 28304843 28304843 1 + C A COAD 28304842 + 28304822 28304862 41 TAAAATAATGAGAGAAAAGGCCAAAGAGAGGTGTTCTGAAC TAAAATAATGAGAGAAAAGGCAAAAGAGAGGTGTTCTGAAC < 41bp 0.562799246626065 0.790868712218144 0.09042671 0.5242386 prediction 0.456138931184157 Functional Gain - CMC1 ENSG00000187118 CDS Human protein_coding chr3:28304842 chr3:28304843 synonymous SNV . 0 22 hm5C_associated_SNPs_116037 0 0 1 0 2 CMC1 chr3:28304871 5'GT 28304871 Upstream 29bp
chr1 196977644 196977644 1 + T C COAD 196977642 + 196977622 196977662 41 TGTGTGGTATCTGAAGAAAACATGAACAAAAATAACATACA TGTGTGGTATCTGAAGAAAACACGAACAAAAATAACATACA < 41bp 0.473745535065332 0.728068194805233 0.058193654 0.0884397 prediction 0.456136389610466 Functional Gain - CFHR5 ENSG00000134389 CDS Human protein_coding chr1:196977642 chr1:196977644 nonsynonymous SNV 0.001 4 23 hm5C_associated_SNPs_116039 0 0 0 0 1 CFHR5 chr1:196977617 3'AG 196977617 Downstream 28bp
chr17 48614082 48614082 1 + A G rs146691139 48614079 + 48614059 48614099 41 TTCAACACAGTGGCCTTCACCGAAGTCATGGGCATGCTGTG TTCAACACAGTGGCCTTCACCGAGGTCATGGGCATGCTGTG < 41bp 0.552914034048519 0.780982156638554 0.78575027 0.8973861 prediction 0.456136245180069 Functional Gain - EPN3 ENSG00000049283 CDS Human protein_coding chr17:48614079 chr17:48614082 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_116040 0 0 0 0 1 EPN3 chr17:48614069 3'AG 48614069 Downstream 14bp
chr20 25277072 25277072 1 + C A UCEC 25277071 + 25277051 25277091 41 TCGGGCAAGTTCTCCAGTGACCGGACCATCACGGAGTATGC TCGGGCAAGTTCTCCAGTGACAGGACCATCACGGAGTATGC < 41bp 0.570729756989943 0.798792818662897 0.8897991 0.90120363 prediction 0.456126123345908 Functional Gain - PYGB ENSG00000100994 CDS Human protein_coding chr20:25277071 chr20:25277072 synonymous SNV . 0 22 hm5C_associated_SNPs_116041 0 0 1 0 1 PYGB chr20:25277006 3'AG 25277006 Downstream 67bp
chr12 113532931 113532931 1 + C A LUAD 113532930 + 113532910 113532950 41 CCTGGGAAGATGGAGTTCCACCTCATCCCCCACTCGCTGCC CCTGGGAAGATGGAGTTCCACATCATCCCCCACTCGCTGCC < 41bp 0.469842927955476 0.728060004168397 0.01843533 0.025665432 prediction 0.456120008336795 Functional Gain - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113532930 chr12:113532931 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_116043 0 0 0 0 2 DTX1 chr12:113532847 3'AG 113532847 Downstream 85bp
chr12 113532931 113532931 1 + C A LUAD 113532930 + 113532910 113532950 41 CCTGGGAAGATGGAGTTCCACCTCATCCCCCACTCGCTGCC CCTGGGAAGATGGAGTTCCACATCATCCCCCACTCGCTGCC < 41bp 0.469842927955476 0.728060004168397 0.01843533 0.025665432 prediction 0.456120008336795 Functional Gain - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113532930 chr12:113532931 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_116043 0 0 0 0 2 DTX1 chr12:113533008 5'GT 113533008 Upstream 78bp
chr1 33235514 33235514 1 + C A LUAD 33235513 + 33235493 33235533 41 AGCGTGAGGCACCAGGCACGCCCCGGGCTCCTGGTGCACGG AGCGTGAGGCACCAGGCACGCACCGGGCTCCTGGTGCACGG < 41bp 0.553633371750329 0.781683165885672 0.19574788 0.20935711 prediction 0.456099588270686 Functional Gain - KIAA1522 ENSG00000162522 CDS Human protein_coding chr1:33235513 chr1:33235514 nonsynonymous SNV 0.003 4 22 hm5C_associated_SNPs_116045 0 0 1 0 1 KIAA1522 chr1:33235481 3'AG 33235481 Downstream 34bp
chr1 47610317 47610317 1 + C T STAD 47610316 + 47610296 47610336 41 CACCACAGCCAGTGGGATCTCCTGGATCCTCTATGCTCTGG CACCACAGCCAGTGGGATCTCTTGGATCCTCTATGCTCTGG < 41bp 0.556083773477754 0.784129998854617 0.11764395 0.07260543 prediction 0.456092450753727 Functional Gain - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47610316 chr1:47610317 synonymous SNV . 0 22 hm5C_associated_SNPs_116047 0 0 0 0 2 CYP4A22 chr1:47610222 3'AG 47610222 Downstream 96bp
chr1 47610317 47610317 1 + C T STAD 47610316 + 47610296 47610336 41 CACCACAGCCAGTGGGATCTCCTGGATCCTCTATGCTCTGG CACCACAGCCAGTGGGATCTCTTGGATCCTCTATGCTCTGG < 41bp 0.556083773477754 0.784129998854617 0.11764395 0.07260543 prediction 0.456092450753727 Functional Gain - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47610316 chr1:47610317 synonymous SNV . 0 22 hm5C_associated_SNPs_116047 0 0 0 0 2 CYP4A22 chr1:47610412 5'GT 47610412 Upstream 96bp
chr3 14941958 14941958 1 + A G TGCT 14941955 + 14941935 14941975 41 CTCCGCCGAGTACGACAACACACAGGGTGAGTCCAGCGTGA CTCCGCCGAGTACGACAACACACGGGGTGAGTCCAGCGTGA < 41bp 0.553805712555808 0.781850049720362 0.08883485 0.3188268 prediction 0.456088674329107 Functional Gain - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14941955 chr3:14941958 nonsynonymous SNV 0.348 2 24 hm5C_associated_SNPs_116048 0 0 0 0 1 FGD5 chr3:14941910 3'AG 14941910 Downstream 49bp
chr1 1390849 1390849 1 + C T STAD 1390848 + 1390828 1390868 41 CTTCCCCTCCAGCAGGTCAGCCGGCGGCTCCTCAGTCGACC CTTCCCCTCCAGCAGGTCAGCTGGCGGCTCCTCAGTCGACC < 41bp 0.489078870851068 0.728032696028256 0.9150123 0.83085907 prediction 0.456065392056512 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1390848 chr1:1390849 nonsynonymous SNV 0.004 2 22 hm5C_associated_SNPs_116052 0 0 0 0 1 ATAD3C chr1:1390840 3'AG 1390840 Downstream 10bp
chr2 24276784 24276784 1 + C T SKCM 24276783 + 24276763 24276803 41 TCCCTGCAGGAAGGACATTCCCCAAGAAGGGCCAAACGTGT TCCCTGCAGGAAGGACATTCCTCAAGAAGGGCCAAACGTGT < 41bp 0.580715163137839 0.808744672831049 0.021376163 0.07780278 prediction 0.456059019386419 Functional Gain - FKBP1B ENSG00000119782 CDS Human protein_coding chr2:24276783 chr2:24276784 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_116053 0 0 1 5 2 FKBP1B chr2:24276772 3'AG 24276772 Downstream 13bp
chr2 24276784 24276784 1 + C T SKCM 24276783 + 24276763 24276803 41 TCCCTGCAGGAAGGACATTCCCCAAGAAGGGCCAAACGTGT TCCCTGCAGGAAGGACATTCCTCAAGAAGGGCCAAACGTGT < 41bp 0.580715163137839 0.808744672831049 0.021376163 0.07780278 prediction 0.456059019386419 Functional Gain - FKBP1B ENSG00000119782 CDS Human protein_coding chr2:24276783 chr2:24276784 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_116053 0 0 1 5 2 FKBP1B chr2:24276819 5'GT 24276819 Upstream 36bp
chr16 23224034 23224034 1 + C T SKCM 23224033 + 23224013 23224053 41 CAACTGCATCGAGCCTTTGTCCAGGAAGAGCTGGGCTGCCA CAACTGCATCGAGCCTTTGTCTAGGAAGAGCTGGGCTGCCA < 41bp 0.566441925958259 0.794466670104968 0.52352846 0.20923996 prediction 0.456049488293417 Functional Gain - SCNN1G ENSG00000166828 CDS Human protein_coding chr16:23224033 chr16:23224034 stopgain 0.985 0 22 hm5C_associated_SNPs_116054 0 0 0 0 1 SCNN1G chr16:23224077 5'GT 23224077 Upstream 44bp
chr17 41931409 41931409 1 + C T GBM 41931408 + 41931388 41931428 41 TCAGCAGTGGCAGCTCTAAGCCCAGGTGAGCCCCAGGTGAC TCAGCAGTGGCAGCTCTAAGCTCAGGTGAGCCCCAGGTGAC < 41bp 0.532522791486904 0.76054440412337 0.82960784 0.4308788 prediction 0.456043225272931 Functional Gain - CD300LG ENSG00000161649 CDS Human protein_coding chr17:41931408 chr17:41931409 nonsynonymous SNV 0.672 0 22 hm5C_associated_SNPs_116056 0 0 0 0 2 CD300LG chr17:41931328 3'AG 41931328 Downstream 82bp
chr17 41931409 41931409 1 + C T GBM 41931408 + 41931388 41931428 41 TCAGCAGTGGCAGCTCTAAGCCCAGGTGAGCCCCAGGTGAC TCAGCAGTGGCAGCTCTAAGCTCAGGTGAGCCCCAGGTGAC < 41bp 0.532522791486904 0.76054440412337 0.82960784 0.4308788 prediction 0.456043225272931 Functional Gain - CD300LG ENSG00000161649 CDS Human protein_coding chr17:41931408 chr17:41931409 nonsynonymous SNV 0.672 0 22 hm5C_associated_SNPs_116056 0 0 0 0 2 CD300LG chr17:41931412 5'GT 41931412 Upstream 4bp
chr2 31483732 31483732 1 + C T STAD 31483731 + 31483711 31483751 41 AGGGACATCCAGAGTCTGCCCCGAAATGCTGCCCTGCGCAA AGGGACATCCAGAGTCTGCCCTGAAATGCTGCCCTGCGCAA < 41bp 0.479100048410705 0.728020007890771 0.36654323 0.2194162 prediction 0.456040015781543 Functional Gain - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31483731 chr2:31483732 stopgain 0.986 1 22 hm5C_associated_SNPs_116057 0 0 0 0 1 EHD3 chr2:31483788 5'GT 31483788 Upstream 57bp
chr16 1733556 1733556 1 + C A rs117348044 1733552 + 1733532 1733572 41 AGTTTGGCATCCACCTCCCCCAGCCTCCTGAGTGGACAGGG AGTTTGGCATCCACCTCCCCCAGCATCCTGAGTGGACAGGG < 41bp 0.315398989966445 0.728016076131432 0.3540304 0.41973317 prediction 0.456032152262863 Functional Gain - JPT2 ENSG00000206053 CDS Human protein_coding chr16:1733552 chr16:1733556 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_116058 0 0 1 0 2 JPT2 chr16:1733510 3'AG 1733510 Downstream 47bp
chr16 1733556 1733556 1 + C A rs117348044 1733552 + 1733532 1733572 41 AGTTTGGCATCCACCTCCCCCAGCCTCCTGAGTGGACAGGG AGTTTGGCATCCACCTCCCCCAGCATCCTGAGTGGACAGGG < 41bp 0.315398989966445 0.728016076131432 0.3540304 0.41973317 prediction 0.456032152262863 Functional Gain - JPT2 ENSG00000206053 CDS Human protein_coding chr16:1733552 chr16:1733556 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_116058 0 0 1 0 2 JPT2 chr16:1733593 5'GT 1733593 Upstream 38bp
chr19 11135092 11135092 1 + A G KIRP 11135089 + 11135069 11135109 41 GGCCAAGGGCGTGCTGCTGACTGATGGCTCCGAGAAGGACA GGCCAAGGGCGTGCTGCTGACTGGTGGCTCCGAGAAGGACA < 41bp 0.498418486096683 0.728014222551043 0.37139434 0.7475248 prediction 0.456028445102085 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11135089 chr19:11135092 nonsynonymous SNV 0.207 3 24 hm5C_associated_SNPs_116059 0 0 1 0 2 SMARCA4 chr19:11135007 3'AG 11135007 Downstream 86bp
chr19 11135092 11135092 1 + A G KIRP 11135089 + 11135069 11135109 41 GGCCAAGGGCGTGCTGCTGACTGATGGCTCCGAGAAGGACA GGCCAAGGGCGTGCTGCTGACTGGTGGCTCCGAGAAGGACA < 41bp 0.498418486096683 0.728014222551043 0.37139434 0.7475248 prediction 0.456028445102085 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11135089 chr19:11135092 nonsynonymous SNV 0.207 3 24 hm5C_associated_SNPs_116059 0 0 1 0 2 SMARCA4 chr19:11135114 5'GT 11135114 Upstream 23bp
chr16 69820935 69820935 1 + C T ESCA 69820934 + 69820914 69820954 41 ATGGCATCTGCCAGCTCTAGCCGGGCAGGAGTGGCCCTGCC ATGGCATCTGCCAGCTCTAGCTGGGCAGGAGTGGCCCTGCC < 41bp 0.530866183335977 0.758880307429317 0.9067081 0.6245156 prediction 0.45602824818668 Functional Gain - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69820934 chr16:69820935 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_116060 0 0 1 0 2 WWP2 chr16:69820899 3'AG 69820899 Downstream 37bp
chr16 69820935 69820935 1 + C T ESCA 69820934 + 69820914 69820954 41 ATGGCATCTGCCAGCTCTAGCCGGGCAGGAGTGGCCCTGCC ATGGCATCTGCCAGCTCTAGCTGGGCAGGAGTGGCCCTGCC < 41bp 0.530866183335977 0.758880307429317 0.9067081 0.6245156 prediction 0.45602824818668 Functional Gain - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69820934 chr16:69820935 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_116060 0 0 1 0 2 WWP2 chr16:69820983 5'GT 69820983 Upstream 49bp
chr17 43138747 43138747 1 + C T LIHC 43138746 + 43138726 43138766 41 AGCCGCCGGCACCTCCGCTGCCGCAGATGATGGAAGGGAAC AGCCGCCGGCACCTCCGCTGCTGCAGATGATGGAAGGGAAC < 41bp 0.530897085724508 0.758909213646905 0.45298 0.42227358 prediction 0.456024255844792 Functional Gain - NMT1 ENSG00000136448 CDS Human protein_coding chr17:43138746 chr17:43138747 nonsynonymous SNV 0.993 0 22 hm5C_associated_SNPs_116061 0 0 1 0 1 NMT1 chr17:43138828 5'GT 43138828 Upstream 82bp
chr20 47858706 47858706 1 + C T SKCM 47858705 + 47858685 47858725 41 GAATCGCAGAGCCAAGCGGGCCCGAGCAATGCCCGAGGAGG GAATCGCAGAGCCAAGCGGGCTCGAGCAATGCCCGAGGAGG < 41bp 0.583040287945689 0.811050208466331 0.14905837 0.1935496 prediction 0.456019841041285 Functional Gain - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47858705 chr20:47858706 synonymous SNV . 0 22 hm5C_associated_SNPs_116063 0 0 1 0 2 DDX27 chr20:47858620 3'AG 47858620 Downstream 87bp
chr20 47858706 47858706 1 + C T SKCM 47858705 + 47858685 47858725 41 GAATCGCAGAGCCAAGCGGGCCCGAGCAATGCCCGAGGAGG GAATCGCAGAGCCAAGCGGGCTCGAGCAATGCCCGAGGAGG < 41bp 0.583040287945689 0.811050208466331 0.14905837 0.1935496 prediction 0.456019841041285 Functional Gain - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47858705 chr20:47858706 synonymous SNV . 0 22 hm5C_associated_SNPs_116063 0 0 1 0 2 DDX27 chr20:47858743 5'GT 47858743 Upstream 38bp
chr5 354005 354005 1 + C T UCEC 354004 + 353984 354024 41 CGCCTCAGTGTCAGTTACCTCCGGGTGAAGAGCTTCTTCCA CGCCTCAGTGTCAGTTACCTCTGGGTGAAGAGCTTCTTCCA < 41bp 0.522801556255852 0.750807064212461 0.9461834 0.9254194 prediction 0.456011015913219 Functional Gain - AHRR ENSG00000063438 CDS Human protein_coding chr5:354004 chr5:354005 nonsynonymous SNV 0.973 5 22 hm5C_associated_SNPs_116064 0 0 1 0 1 AHRR chr5:354026 5'GT 354026 Upstream 22bp
chr19 48244164 48244164 1 + C T rs548453450 48244163 + 48244143 48244183 41 GCTGATGGCGCACGACTTCACCAAGTTTCACTCGCTGAAGC GCTGATGGCGCACGACTTCACTAAGTTTCACTCGCTGAAGC < 41bp 0.513281270055378 0.741285192278843 0.40629223 0.3831054 prediction 0.456007844446931 Functional Gain - EHD2 ENSG00000024422 CDS Human protein_coding chr19:48244163 chr19:48244164 synonymous SNV . 0 22 hm5C_associated_SNPs_116066 0 0 0 0 1 EHD2 chr19:48244138 3'AG 48244138 Downstream 27bp
chr19 49869085 49869085 1 + C T rs35186396 49869084 + 49869064 49869104 41 GACAGGAGAGGTGCTGATCTCCGAGAATGTGGTGGCATCCA GACAGGAGAGGTGCTGATCTCTGAGAATGTGGTGGCATCCA < 41bp 0.489751284792052 0.727999279336755 0.38354778 0.107984275 prediction 0.45599855867351 Functional Gain - DKKL1 ENSG00000104901 CDS Human protein_coding chr19:49869084 chr19:49869085 synonymous SNV . 0 22 hm5C_associated_SNPs_116068 0 0 0 0 2 DKKL1 chr19:49869050 3'AG 49869050 Downstream 36bp
chr19 49869085 49869085 1 + C T rs35186396 49869084 + 49869064 49869104 41 GACAGGAGAGGTGCTGATCTCCGAGAATGTGGTGGCATCCA GACAGGAGAGGTGCTGATCTCTGAGAATGTGGTGGCATCCA < 41bp 0.489751284792052 0.727999279336755 0.38354778 0.107984275 prediction 0.45599855867351 Functional Gain - DKKL1 ENSG00000104901 CDS Human protein_coding chr19:49869084 chr19:49869085 synonymous SNV . 0 22 hm5C_associated_SNPs_116068 0 0 0 0 2 DKKL1 chr19:49869142 5'GT 49869142 Upstream 58bp
chr4 159782811 159782811 1 + C G LUSC 159782810 + 159782790 159782830 41 ACCTACCACCTGGCCTGGGTCCCAACTGTCATGCCTGTGGA ACCTACCACCTGGCCTGGGTCGCAACTGTCATGCCTGTGGA < 41bp 0.404470912355736 0.727990494694505 0.074552655 0.15042266 prediction 0.455980989389011 Functional Gain - FNIP2 ENSG00000052795 CDS Human protein_coding chr4:159782810 chr4:159782811 nonsynonymous SNV 0.703 2 22 hm5C_associated_SNPs_116071 0 0 0 0 1 FNIP2 chr4:159782759 3'AG 159782759 Downstream 53bp
chr10 69955261 69955261 1 + C A UCEC 69955257 + 69955237 69955277 41 GTACAAAGTTTGCCCATTCGCAGTCGGCTAACCTCTGCTGG GTACAAAGTTTGCCCATTCGCAGTAGGCTAACCTCTGCTGG < 41bp 0.323129419089334 0.7279863736626 0.26494476 0.6419628 prediction 0.455972747325199 Functional Gain - MYPN ENSG00000138347 CDS Human protein_coding chr10:69955257 chr10:69955261 synonymous SNV . 0 25 hm5C_associated_SNPs_116073 0 0 0 0 2 MYPN chr10:69955207 3'AG 69955207 Downstream 55bp
chr10 69955261 69955261 1 + C A UCEC 69955257 + 69955237 69955277 41 GTACAAAGTTTGCCCATTCGCAGTCGGCTAACCTCTGCTGG GTACAAAGTTTGCCCATTCGCAGTAGGCTAACCTCTGCTGG < 41bp 0.323129419089334 0.7279863736626 0.26494476 0.6419628 prediction 0.455972747325199 Functional Gain - MYPN ENSG00000138347 CDS Human protein_coding chr10:69955257 chr10:69955261 synonymous SNV . 0 25 hm5C_associated_SNPs_116073 0 0 0 0 2 MYPN chr10:69955289 5'GT 69955289 Upstream 29bp
chr3 183954187 183954187 1 + C T BRCA 183954186 + 183954166 183954206 41 CCTGCAGGTTCCGAGTGGGCCCCCAGACGTGCTGGCTGCTC CCTGCAGGTTCCGAGTGGGCCTCCAGACGTGCTGGCTGCTC < 41bp 0.56898803284883 0.796969788931501 0.4672622 0.9489597 prediction 0.455963512165342 Functional Gain - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183954186 chr3:183954187 synonymous SNV . 0 22 hm5C_associated_SNPs_116074 0 0 0 0 1 VWA5B2 chr3:183954131 3'AG 183954131 Downstream 57bp
chr11 73680366 73680366 1 + C T SKCM 73680365 + 73680345 73680385 41 ATCCCCATCAATGACATCATCCAGTGAGTCCATCTGCCTTG ATCCCCATCAATGACATCATCTAGTGAGTCCATCTGCCTTG < 41bp 0.529084235133266 0.75706546859246 0.13063315 0.04799384 prediction 0.45596246691839 Functional Gain - DNAJB13 ENSG00000187726 CDS Human protein_coding chr11:73680365 chr11:73680366 nonsynonymous SNV 0.541 1 22 hm5C_associated_SNPs_116075 0 0 0 0 2 DNAJB13 chr11:73680291 3'AG 73680291 Downstream 76bp
chr11 73680366 73680366 1 + C T SKCM 73680365 + 73680345 73680385 41 ATCCCCATCAATGACATCATCCAGTGAGTCCATCTGCCTTG ATCCCCATCAATGACATCATCTAGTGAGTCCATCTGCCTTG < 41bp 0.529084235133266 0.75706546859246 0.13063315 0.04799384 prediction 0.45596246691839 Functional Gain - DNAJB13 ENSG00000187726 CDS Human protein_coding chr11:73680365 chr11:73680366 nonsynonymous SNV 0.541 1 22 hm5C_associated_SNPs_116075 0 0 0 0 2 DNAJB13 chr11:73680367 5'GT 73680367 Upstream 2bp
chr1 175049373 175049373 1 + C T LUSC 175049372 + 175049352 175049392 41 GTGAGCTGGGAGCCCTCCAGCCAGGTGGATCACTACCTCCT GTGAGCTGGGAGCCCTCCAGCTAGGTGGATCACTACCTCCT < 41bp 0.546692619380549 0.7746671539029 0.9376972 0.91457117 prediction 0.455949069044701 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175049372 chr1:175049373 stopgain 0.996 0 22 hm5C_associated_SNPs_116078 0 0 0 0 1 TNN chr1:175049299 3'AG 175049299 Downstream 75bp
chr1 3599704 3599704 1 + T C KIRC 3599702 + 3599682 3599722 41 GTGGGCGGAACGGATTCCAGCATGGACGTCTTCCACCTGGA GTGGGCGGAACGGATTCCAGCACGGACGTCTTCCACCTGGA < 41bp 0.545408763256659 0.773382294407539 0.5784827 0.5187977 prediction 0.455947062301761 Functional Gain - TP73 ENSG00000078900 CDS Human protein_coding chr1:3599702 chr1:3599704 nonsynonymous SNV 0.972 3 23 hm5C_associated_SNPs_116080 0 0 1 0 2 TP73 chr1:3599624 3'AG 3599624 Downstream 81bp
chr1 3599704 3599704 1 + T C KIRC 3599702 + 3599682 3599722 41 GTGGGCGGAACGGATTCCAGCATGGACGTCTTCCACCTGGA GTGGGCGGAACGGATTCCAGCACGGACGTCTTCCACCTGGA < 41bp 0.545408763256659 0.773382294407539 0.5784827 0.5187977 prediction 0.455947062301761 Functional Gain - TP73 ENSG00000078900 CDS Human protein_coding chr1:3599702 chr1:3599704 nonsynonymous SNV 0.972 3 23 hm5C_associated_SNPs_116080 0 0 1 0 2 TP73 chr1:3599744 5'GT 3599744 Upstream 41bp
chr22 44395451 44395451 1 + T A rs1007863 44395447 + 44395427 44395467 41 CTGAGACGTGGGTGTTCCTGCAGCTGGGGCCTGTGCTCCCA CTGAGACGTGGGTGTTCCTGCAGCAGGGGCCTGTGCTCCCA < 41bp 0.649613966632914 0.877576174236569 0.29608458 0.34374806 prediction 0.45592441520731 Functional Gain - PARVB ENSG00000188677 CDS Human protein_coding chr22:44395447 chr22:44395451 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_116082 0 0 0 0 1 PARVB chr22:44395414 3'AG 44395414 Downstream 38bp
chr1 76259773 76259773 1 + C T LIHC 76259772 + 76259752 76259792 41 ACTTTTTTCCCTCCTAGTTACCAGATGTATGCTACTCATGG ACTTTTTTCCCTCCTAGTTACTAGATGTATGCTACTCATGG < 41bp 0.492962806778588 0.727957650295835 0.24572152 0.23383567 prediction 0.45591530059167 Functional Gain - RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76259772 chr1:76259773 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_116084 0 0 1 1 1 RABGGTB chr1:76259769 3'AG 76259769 Downstream 5bp
chr12 7021927 7021927 1 + C T SKCM 7021926 + 7021906 7021946 41 GGCCAACCTGGGGGAGCTGGCCAAGCTTCGAGACCTGCCCA GGCCAACCTGGGGGAGCTGGCTAAGCTTCGAGACCTGCCCA < 41bp 0.486166134313755 0.727954334460873 0.52876776 0.41254574 prediction 0.455908668921746 Functional Gain - LRRC23 ENSG00000010626 CDS Human protein_coding chr12:7021926 chr12:7021927 synonymous SNV . 0 22 hm5C_associated_SNPs_116086 0 0 0 0 1 LRRC23 chr12:7021894 3'AG 7021894 Downstream 34bp
chr1 27657221 27657221 1 + C T SKCM 27657220 + 27657200 27657240 41 TTTCCTCACAGGTGGTTTTTCCCCATCATCGGCCACATGGG TTTCCTCACAGGTGGTTTTTCTCCATCATCGGCCACATGGG < 41bp 0.585388375395223 0.813341638231947 0.034959495 0.9440018 prediction 0.455906525673447 Functional Gain - TMEM222 ENSG00000186501 CDS Human protein_coding chr1:27657220 chr1:27657221 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_116087 0 0 1 1 2 TMEM222 chr1:27657211 3'AG 27657211 Downstream 11bp
chr1 27657221 27657221 1 + C T SKCM 27657220 + 27657200 27657240 41 TTTCCTCACAGGTGGTTTTTCCCCATCATCGGCCACATGGG TTTCCTCACAGGTGGTTTTTCTCCATCATCGGCCACATGGG < 41bp 0.585388375395223 0.813341638231947 0.034959495 0.9440018 prediction 0.455906525673447 Functional Gain - TMEM222 ENSG00000186501 CDS Human protein_coding chr1:27657220 chr1:27657221 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_116087 0 0 1 1 2 TMEM222 chr1:27657295 5'GT 27657295 Upstream 75bp
chr11 61533528 61533528 1 + C T SKCM 61533527 + 61533507 61533547 41 GGGTCCACCACCTGAGCCCCCCTGGGGGTGGACCCTCCCCG GGGTCCACCACCTGAGCCCCCTTGGGGGTGGACCCTCCCCG < 41bp 0.495980880611966 0.727946362203373 0.3496526 0.32052377 prediction 0.455892724406746 Functional Gain - MYRF ENSG00000124920 CDS Human protein_coding chr11:61533527 chr11:61533528 nonsynonymous SNV 0.990 1 22 hm5C_associated_SNPs_116090 0 0 0 0 1 MYRF chr11:61533430 3'AG 61533430 Downstream 99bp
chr17 80011903 80011903 1 + C T UCEC 80011902 + 80011882 80011922 41 GACATGTACGAGGAGATCCACCGCAAGCTCTCAGAGGCCAC GACATGTACGAGGAGATCCACTGCAAGCTCTCAGAGGCCAC < 41bp 0.584392889314512 0.81233752803238 0.05573225 0.4116819 prediction 0.455889277435735 Functional Gain - GPS1 ENSG00000169727 CDS Human protein_coding chr17:80011902 chr17:80011903 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_116092 0 0 1 0 1 GPS1 chr17:80011925 5'GT 80011925 Upstream 23bp
chr5 131409633 131409633 1 + C A HNSC 131409632 + 131409612 131409652 41 TGTGAATGCCATCCAGGAGGCCCGGCGTCTCCTGAACCTGA TGTGAATGCCATCCAGGAGGCACGGCGTCTCCTGAACCTGA < 41bp 0.575157045959171 0.803100697816082 0.7805787 0.65600795 prediction 0.455887303713823 Functional Gain - CSF2 ENSG00000164400 CDS Human protein_coding chr5:131409632 chr5:131409633 synonymous SNV . 0 22 hm5C_associated_SNPs_116093 0 0 0 0 1 CSF2 chr5:131409675 5'GT 131409675 Upstream 43bp
chr2 169713225 169713225 1 + C A LUSC 169713221 + 169713201 169713241 41 CCTGGAACGAATGCTTAAAACGTACTCCAGCACCTCCTCCT CCTGGAACGAATGCTTAAAACGTAATCCAGCACCTCCTCCT < 41bp 0.31564943895396 0.727937391898092 0.04886198 0.07414612 prediction 0.455874783796184 Functional Gain - NOSTRIN ENSG00000163072 CDS Human protein_coding chr2:169713221 chr2:169713225 stopgain 0.057 1 25 hm5C_associated_SNPs_116094 0 0 1 0 2 NOSTRIN chr2:169713200 3'AG 169713200 Downstream 26bp
chr2 169713225 169713225 1 + C A LUSC 169713221 + 169713201 169713241 41 CCTGGAACGAATGCTTAAAACGTACTCCAGCACCTCCTCCT CCTGGAACGAATGCTTAAAACGTAATCCAGCACCTCCTCCT < 41bp 0.31564943895396 0.727937391898092 0.04886198 0.07414612 prediction 0.455874783796184 Functional Gain - NOSTRIN ENSG00000163072 CDS Human protein_coding chr2:169713221 chr2:169713225 stopgain 0.057 1 25 hm5C_associated_SNPs_116094 0 0 1 0 2 NOSTRIN chr2:169713288 5'GT 169713288 Upstream 64bp
chr2 209138325 209138325 1 + C A UCEC 209138324 + 209138304 209138344 41 ACAGAGAGAGCAGAAGGAGGCCAGGGAGAACAGCAGCCTTT ACAGAGAGAGCAGAAGGAGGCAAGGGAGAACAGCAGCCTTT < 41bp 0.476507602589697 0.727933215180227 0.8469196 0.84322095 prediction 0.455866430360455 Functional Gain - PIKFYVE ENSG00000115020 CDS Human protein_coding chr2:209138324 chr2:209138325 nonsynonymous SNV 0.965 1 22 hm5C_associated_SNPs_116097 0 0 1 0 1 PIKFYVE chr2:209138308 3'AG 209138308 Downstream 18bp
chr8 51569532 51569532 1 + C A LUAD 51569528 + 51569508 51569548 41 CCCCTCCAGGACAGAGTGTACTCCCCGACCTTCCTGGCCCT CCCCTCCAGGACAGAGTGTACTCCACGACCTTCCTGGCCCT < 41bp 0.376882107481577 0.727932456252923 0.14142752 0.90830624 prediction 0.455864912505846 Functional Gain - SNTG1 ENSG00000147481 CDS Human protein_coding chr8:51569528 chr8:51569532 nonsynonymous SNV 0.004 4 25 hm5C_associated_SNPs_116098 0 0 0 0 2 SNTG1 chr8:51569469 3'AG 51569469 Downstream 64bp
chr8 51569532 51569532 1 + C A LUAD 51569528 + 51569508 51569548 41 CCCCTCCAGGACAGAGTGTACTCCCCGACCTTCCTGGCCCT CCCCTCCAGGACAGAGTGTACTCCACGACCTTCCTGGCCCT < 41bp 0.376882107481577 0.727932456252923 0.14142752 0.90830624 prediction 0.455864912505846 Functional Gain - SNTG1 ENSG00000147481 CDS Human protein_coding chr8:51569528 chr8:51569532 nonsynonymous SNV 0.004 4 25 hm5C_associated_SNPs_116098 0 0 0 0 2 SNTG1 chr8:51569585 5'GT 51569585 Upstream 54bp
chr20 32344993 32344993 1 + C A SKCM 32344989 + 32344969 32345009 41 GTGGAGCCTCCAGTATATCCCACCCCCACAGTGTACAGCCC GTGGAGCCTCCAGTATATCCCACCACCACAGTGTACAGCCC < 41bp 0.291846383849689 0.727929809498975 0.014883667 0.038265735 prediction 0.45585961899795 Functional Gain - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32344989 chr20:32344993 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_116100 0 0 0 0 1 ZNF341 chr20:32344954 3'AG 32344954 Downstream 40bp
chr1 222835412 222835412 1 + C A LUSC 222835408 + 222835388 222835428 41 CTTTCTCAAGGATCAGTGGACGGGCCTCTACCTCATCCTCG CTTTCTCAAGGATCAGTGGACGGGACTCTACCTCATCCTCG < 41bp 0.337756178862515 0.727921914871531 0.3712507 0.5074234 prediction 0.455843829743062 Functional Gain - MIA3 ENSG00000154305 CDS Human protein_coding chr1:222835408 chr1:222835412 nonsynonymous SNV 0.757 1 25 hm5C_associated_SNPs_116102 0 0 1 0 2 MIA3 chr1:222835398 3'AG 222835398 Downstream 15bp
chr1 222835412 222835412 1 + C A LUSC 222835408 + 222835388 222835428 41 CTTTCTCAAGGATCAGTGGACGGGCCTCTACCTCATCCTCG CTTTCTCAAGGATCAGTGGACGGGACTCTACCTCATCCTCG < 41bp 0.337756178862515 0.727921914871531 0.3712507 0.5074234 prediction 0.455843829743062 Functional Gain - MIA3 ENSG00000154305 CDS Human protein_coding chr1:222835408 chr1:222835412 nonsynonymous SNV 0.757 1 25 hm5C_associated_SNPs_116102 0 0 1 0 2 MIA3 chr1:222835466 5'GT 222835466 Upstream 55bp
chr17 78211385 78211385 1 + A G rs147201172 78211382 + 78211362 78211402 41 CCTGGAGAGCATTGCGGTGGCCAAAGCCTTCGGTAAGACGC CCTGGAGAGCATTGCGGTGGCCAGAGCCTTCGGTAAGACGC < 41bp 0.485606925126341 0.727910330380706 0.19179347 0.7962483 prediction 0.455820660761411 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78211382 chr17:78211385 nonsynonymous SNV 0.951 4 24 hm5C_associated_SNPs_116105 0 0 1 0 2 SLC26A11 chr17:78211321 3'AG 78211321 Downstream 65bp
chr17 78211385 78211385 1 + A G rs147201172 78211382 + 78211362 78211402 41 CCTGGAGAGCATTGCGGTGGCCAAAGCCTTCGGTAAGACGC CCTGGAGAGCATTGCGGTGGCCAGAGCCTTCGGTAAGACGC < 41bp 0.485606925126341 0.727910330380706 0.19179347 0.7962483 prediction 0.455820660761411 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78211382 chr17:78211385 nonsynonymous SNV 0.951 4 24 hm5C_associated_SNPs_116105 0 0 1 0 2 SLC26A11 chr17:78211393 5'GT 78211393 Upstream 9bp
chr19 41518370 41518370 1 + C T OV 41518369 + 41518349 41518389 41 GTCACCCAACACACCAGCTTCCGAGGGTACATCATCCCCAA GTCACCCAACACACCAGCTTCTGAGGGTACATCATCCCCAA < 41bp 0.550615124472299 0.778519890033638 0.81997585 0.34408012 prediction 0.455809531122678 Functional Gain - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41518369 chr19:41518370 stopgain 0.434 1 22 hm5C_associated_SNPs_116106 1 0 0 0 1 CYP2B6 chr19:41518390 5'GT 41518390 Upstream 21bp
chr7 150417449 150417449 1 + C T SKCM 150417448 + 150417428 150417468 41 CCACGCGCTGCTCCTGGTGACCCAGTTGGGTCGGTTCACCG CCACGCGCTGCTCCTGGTGACTCAGTTGGGTCGGTTCACCG < 41bp 0.48361737955744 0.727902274409045 0.2451173 0.20603108 prediction 0.45580454881809 Functional Gain - GIMAP1;GIMAP1-GIMAP5 ENSG00000213203 CDS Human protein_coding chr7:150417448 chr7:150417449 synonymous SNV . 0 22 hm5C_associated_SNPs_116107 0 0 0 0 1 GIMAP1;GIMAP1-GIMAP5 chr7:150417494 5'GT 150417494 Upstream 46bp
chr1 152975721 152975721 1 + C A LUAD 152975720 + 152975700 152975740 41 GGTCCCTGAGCCAGGCTGTACCAAGGTCCCTGAGCCAGGTT GGTCCCTGAGCCAGGCTGTACAAAGGTCCCTGAGCCAGGTT < 41bp 0.578555455375847 0.80645430459801 0.78783506 0.52840066 prediction 0.455797698444326 Functional Gain - SPRR3 ENSG00000163209 CDS Human protein_coding chr1:152975720 chr1:152975721 synonymous SNV . 0 22 hm5C_associated_SNPs_116109 0 0 0 0 1 SPRR3 chr1:152975701 3'AG 152975701 Downstream 21bp
chr17 78064032 78064032 1 + A G rs371158080 78064029 + 78064009 78064049 41 CACGAAGAACACGGGACGCGCGCAGGCACGTGCACGAACAA CACGAAGAACACGGGACGCGCGCGGGCACGTGCACGAACAA < 41bp 0.486934503158411 0.727897109125591 0.27546507 0.7535818 prediction 0.455794218251182 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78064029 chr17:78064032 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_116110 1 0 0 0 1 CCDC40 chr17:78063938 3'AG 78063938 Downstream 95bp
chr1 222919938 222919938 1 + C A LIHC 222919937 + 222919917 222919957 41 CCTAGAGAAGAGTGTACCTTCCAAAAAGACTACTCCTAAAA CCTAGAGAAGAGTGTACCTTCAAAAAAGACTACTCCTAAAA < 41bp 0.468537316274509 0.727888527348649 0.045196503 0.080384135 prediction 0.455777054697298 Functional Gain - FAM177B ENSG00000197520 CDS Human protein_coding chr1:222919937 chr1:222919938 synonymous SNV . 0 22 hm5C_associated_SNPs_116114 0 0 0 0 1 FAM177B chr1:222919873 3'AG 222919873 Downstream 66bp
chrX 152914704 152914704 1 + C A TGCT 152914703 + 152914683 152914723 41 ACAGGAGGCTTCAGCAGATTCCAGGCCGAGTGCCCTCACCT ACAGGAGGCTTCAGCAGATTCAAGGCCGAGTGCCCTCACCT < 41bp 0.581004164728421 0.808885015548847 0.7168923 0.7972699 prediction 0.45576170164085 Functional Gain - DUSP9 ENSG00000130829 CDS Human protein_coding chrX:152914703 chrX:152914704 nonsynonymous SNV 0.994 0 22 hm5C_associated_SNPs_116118 0 0 1 0 1 DUSP9 chrX:152914687 3'AG 152914687 Downstream 18bp
chr20 33862135 33862135 1 + T C STAD 33862133 + 33862113 33862153 41 TTTGACAACCAGAAACTGAGCGTGGAGCCAGGCTACCCGCG TTTGACAACCAGAAACTGAGCGCGGAGCCAGGCTACCCGCG < 41bp 0.568065244162202 0.795931954801347 0.8562864 0.8896773 prediction 0.45573342127829 Functional Gain - MMP24 ENSG00000125966 CDS Human protein_coding chr20:33862133 chr20:33862135 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_116120 0 0 0 0 1 MMP24 chr20:33862075 3'AG 33862075 Downstream 61bp
chr12 122614650 122614650 1 + C T COAD 122614649 + 122614629 122614669 41 CCGGTGGCCTGGCCCAATCCCCGGGAAATAGGTAACCCAAA CCGGTGGCCTGGCCCAATCCCTGGGAAATAGGTAACCCAAA < 41bp 0.542573005111701 0.770430251517499 0.85688174 0.42124563 prediction 0.455714492811595 Functional Gain - MLXIP ENSG00000175727 CDS Human protein_coding chr12:122614649 chr12:122614650 nonsynonymous SNV 0.978 4 22 hm5C_associated_SNPs_116126 0 0 1 0 1 MLXIP chr12:122614659 5'GT 122614659 Upstream 10bp
chr7 134678273 134678273 1 + C T rs186048202 134678272 + 134678252 134678292 41 TTTGGTGATCCCTTCTTCCCCCGGACTACACAGATACTATT TTTGGTGATCCCTTCTTCCCCTGGACTACACAGATACTATT < 41bp 0.538446564117979 0.766303442121071 0.18795714 0.15249518 prediction 0.455713756006184 Functional Gain - AGBL3 ENSG00000146856 CDS Human protein_coding chr7:134678272 chr7:134678273 nonsynonymous SNV 0.965 4 22 hm5C_associated_SNPs_116127 0 0 1 0 1 AGBL3 chr7:134678244 3'AG 134678244 Downstream 30bp
chr11 120097687 120097687 1 + C T rs200189572 120097686 + 120097666 120097706 41 TACACCCGCCAGGAGGATGTCCGGTTCTGGCTGGAGCAAGG TACACCCGCCAGGAGGATGTCTGGTTCTGGCTGGAGCAAGG < 41bp 0.491572704047524 0.727855782499875 0.264278 0.4150069 prediction 0.455711564999751 Functional Gain - OAF ENSG00000184232 CDS Human protein_coding chr11:120097686 chr11:120097687 nonsynonymous SNV 0.969 2 22 hm5C_associated_SNPs_116128 0 0 1 0 1 OAF chr11:120097705 5'GT 120097705 Upstream 19bp
chr10 98064423 98064423 1 + C T rs564971723 98064422 + 98064402 98064442 41 GCGTTCCTCATGGAGCTGGCCCGCAGGAAAGGGTTCAGGGT GCGTTCCTCATGGAGCTGGCCTGCAGGAAAGGGTTCAGGGT < 41bp 0.554202510876417 0.78205312597974 0.081077814 0.1062901 prediction 0.455701230206645 Functional Gain - DNTT ENSG00000107447 CDS Human protein_coding chr10:98064422 chr10:98064423 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_116131 0 0 0 0 1 DNTT chr10:98064457 5'GT 98064457 Upstream 35bp
chr1 45973088 45973088 1 + C T SKCM 45973087 + 45973067 45973107 41 CTACCGCTGCCAGGACCTACCCTGGCCTTCCTGGTACTCAG CTACCGCTGCCAGGACCTACCTTGGCCTTCCTGGTACTCAG < 41bp 0.538951571985382 0.766797487262094 0.3575713 0.2234551 prediction 0.455691830553424 Functional Gain - MMACHC ENSG00000132763 CDS Human protein_coding chr1:45973087 chr1:45973088 synonymous SNV . 0 22 hm5C_associated_SNPs_116133 0 0 0 0 1 MMACHC chr1:45973028 3'AG 45973028 Downstream 61bp
chr1 117619347 117619347 1 + C T LUAD 117619346 + 117619326 117619366 41 GCCCTCCCCACCTGGTGCCTCCCCAACCCCTTCCTCGTCGT GCCCTCCCCACCTGGTGCCTCTCCAACCCCTTCCTCGTCGT < 41bp 0.445608324314072 0.727837152602171 0.0237993 0.95739394 prediction 0.455674305204342 Functional Gain - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117619346 chr1:117619347 nonsynonymous SNV 0.778 4 22 hm5C_associated_SNPs_116140 0 0 1 0 2 TTF2 chr1:117619263 3'AG 117619263 Downstream 85bp
chr1 117619347 117619347 1 + C T LUAD 117619346 + 117619326 117619366 41 GCCCTCCCCACCTGGTGCCTCCCCAACCCCTTCCTCGTCGT GCCCTCCCCACCTGGTGCCTCTCCAACCCCTTCCTCGTCGT < 41bp 0.445608324314072 0.727837152602171 0.0237993 0.95739394 prediction 0.455674305204342 Functional Gain - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117619346 chr1:117619347 nonsynonymous SNV 0.778 4 22 hm5C_associated_SNPs_116140 0 0 1 0 2 TTF2 chr1:117619445 5'GT 117619445 Upstream 99bp
chr17 18874459 18874459 1 + A G UCEC 18874456 + 18874436 18874476 41 CACATGTTTCGAGACCCCCACACAGGGGACCTGCCGTGGAC CACATGTTTCGAGACCCCCACACGGGGGACCTGCCGTGGAC < 41bp 0.564542694796239 0.792377843811189 0.018046439 0.3116374 prediction 0.455670298029899 Functional Gain - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18874456 chr17:18874459 synonymous SNV . 0 24 hm5C_associated_SNPs_116141 0 0 0 0 1 SLC5A10 chr17:18874531 5'GT 18874531 Upstream 73bp
chr1 158152850 158152850 1 + C T BRCA 158152849 + 158152829 158152869 41 GCTGACGAGACATGGTATCTCCGAGCAACCCTGGATGTGGT GCTGACGAGACATGGTATCTCTGAGCAACCCTGGATGTGGT < 41bp 0.539924305142727 0.767756755842626 0.5068679 0.13039699 prediction 0.455664901399797 Functional Gain - CD1D ENSG00000158473 CDS Human protein_coding chr1:158152849 chr1:158152850 stopgain 0.438 0 22 hm5C_associated_SNPs_116142 0 0 0 0 1 CD1D chr1:158152946 5'GT 158152946 Upstream 97bp
chr17 7385379 7385379 1 + C T rs368028075 7385378 + 7385358 7385398 41 CCCTCCGCTCCACCCAGCCTCCGCTGGCACCAGTGCTGCCA CCCTCCGCTCCACCCAGCCTCTGCTGGCACCAGTGCTGCCA < 41bp 0.531001814166677 0.758834133864734 0.03155765 0.056544542 prediction 0.455664639396114 Functional Gain - SLC35G6 ENSG00000259224 CDS Human protein_coding chr17:7385378 chr17:7385379 nonsynonymous SNV 0.889 0 22 hm5C_associated_SNPs_116143 0 0 0 0 1 SLC35G6 chr17:7385307 3'AG 7385307 Downstream 73bp
chr17 79671404 79671404 1 + C T SKCM 79671403 + 79671383 79671423 41 CCCAAGATACAGCAGCTGGTCCAGGACATCGCCAGCCTCAC CCCAAGATACAGCAGCTGGTCTAGGACATCGCCAGCCTCAC < 41bp 0.544903945276742 0.772732361823708 0.21079955 0.032357752 prediction 0.455656833093931 Functional Gain - MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79671403 chr17:79671404 stopgain 1.000 0 22 hm5C_associated_SNPs_116145 0 0 1 0 1 MRPL12 chr17:79671460 5'GT 79671460 Upstream 57bp
chr1 207286380 207286380 1 + C A rs12072216 207286376 + 207286356 207286396 41 GCGAAGCAGCAGGCCATGCACCCCCCAAAAACTCCATCTGG GCGAAGCAGCAGGCCATGCACCCCACAAAAACTCCATCTGG < 41bp 0.315515026928725 0.727824390423276 0.12335932 0.080869466 prediction 0.455648780846551 Functional Gain - C4BPA ENSG00000123838 CDS Human protein_coding chr1:207286376 chr1:207286380 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_116146 0 0 0 0 1 C4BPA chr1:207286346 3'AG 207286346 Downstream 35bp
chr3 51978533 51978533 1 + C A COAD 51978532 + 51978512 51978552 41 GGGACCACTTTGTGTCTCACCCGGGCAAGTACACACTTATC GGGACCACTTTGTGTCTCACCAGGGCAAGTACACACTTATC < 41bp 0.587027156806643 0.81485075861285 0.85173166 0.9211068 prediction 0.455647203612414 Functional Gain - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51978532 chr3:51978533 nonsynonymous SNV 0.374 2 22 hm5C_associated_SNPs_116147 0 0 1 0 1 PARP3 chr3:51978594 5'GT 51978594 Upstream 62bp
chr2 119729107 119729107 1 + C A LUSC 119729103 + 119729083 119729123 41 AGAATCAAAGGTGAACAAGGCGCCCCAGGTAGGTTCATTTC AGAATCAAAGGTGAACAAGGCGCCACAGGTAGGTTCATTTC < 41bp 0.300895047478961 0.727801452499428 0.22066045 0.36816633 prediction 0.455602904998856 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119729103 chr2:119729107 nonsynonymous SNV 0.027 1 25 hm5C_associated_SNPs_116152 0 0 0 0 2 MARCO chr2:119729075 3'AG 119729075 Downstream 33bp
chr2 119729107 119729107 1 + C A LUSC 119729103 + 119729083 119729123 41 AGAATCAAAGGTGAACAAGGCGCCCCAGGTAGGTTCATTTC AGAATCAAAGGTGAACAAGGCGCCACAGGTAGGTTCATTTC < 41bp 0.300895047478961 0.727801452499428 0.22066045 0.36816633 prediction 0.455602904998856 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119729103 chr2:119729107 nonsynonymous SNV 0.027 1 25 hm5C_associated_SNPs_116152 0 0 0 0 2 MARCO chr2:119729110 5'GT 119729110 Upstream 4bp
chr5 236581 236581 1 + C T LUAD 236580 + 236560 236600 41 TGGCCAGGATCAGATTGTGCCCGGCCTGTACGCCTGTGGGG TGGCCAGGATCAGATTGTGCCTGGCCTGTACGCCTGTGGGG < 41bp 0.486309874282922 0.727797644743256 0.18597597 0.12637031 prediction 0.455595289486513 Functional Gain - SDHA ENSG00000073578 CDS Human protein_coding chr5:236580 chr5:236581 synonymous SNV . 0 22 hm5C_associated_SNPs_116153 2 0 0 0 1 SDHA chr5:236543 3'AG 236543 Downstream 39bp
chr20 23350336 23350336 1 + A G UCEC 23350333 + 23350313 23350353 41 CCATTCATGTGCAATGCGTGCGGACGGACATTCACCGACAA CCATTCATGTGCAATGCGTGCGGGCGGACATTCACCGACAA < 41bp 0.537619589186243 0.765410518804573 0.82437783 0.92572564 prediction 0.455581859236659 Functional Gain - GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350333 chr20:23350336 synonymous SNV . 0 24 hm5C_associated_SNPs_116155 0 0 1 0 1 GZF1 chr20:23350378 5'GT 23350378 Upstream 43bp
chr1 1267065 1267065 1 + T C COAD 1267063 + 1267043 1267083 41 GCACTGGCCATGAAAATGGCCGTGGAGGAGATCAACAACAA GCACTGGCCATGAAAATGGCCGCGGAGGAGATCAACAACAA < 41bp 0.526431068565044 0.754216724896449 0.13054922 0.33057493 prediction 0.45557131266281 Functional Gain - TAS1R3 ENSG00000169962 CDS Human protein_coding chr1:1267063 chr1:1267065 nonsynonymous SNV 0.828 4 23 hm5C_associated_SNPs_116156 0 0 0 0 1 TAS1R3 chr1:1267018 3'AG 1267018 Downstream 48bp
chr1 110586383 110586383 1 + C T READ 110586382 + 110586362 110586402 41 TCTGGAGGGGGAGACGTTTCCCCTGGAACGGGATGAAGTGA TCTGGAGGGGGAGACGTTTCCTCTGGAACGGGATGAAGTGA < 41bp 0.468161426780835 0.727782507790566 0.19273862 0.29441196 prediction 0.455565015581133 Functional Gain - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110586382 chr1:110586383 synonymous SNV . 0 22 hm5C_associated_SNPs_116157 0 0 1 0 1 STRIP1 chr1:110586478 5'GT 110586478 Upstream 96bp
chr12 113515277 113515277 1 + C A BRCA 113515276 + 113515256 113515296 41 TCTACGACCCGTCGTCGGCGCCGGGCAAGGGCATCGTGTGG TCTACGACCCGTCGTCGGCGCAGGGCAAGGGCATCGTGTGG < 41bp 0.579410520937604 0.807192285716324 0.8054824 0.78459144 prediction 0.455563529557439 Functional Gain - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113515276 chr12:113515277 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_116158 0 0 0 0 1 DTX1 chr12:113515229 3'AG 113515229 Downstream 49bp
chr10 88423523 88423523 1 + C A rs33936589 88423522 + 88423502 88423542 41 CTTGGAAGCCAAGGCACCCCCCAGACCCCAGGGACACGAAG CTTGGAAGCCAAGGCACCCCCAAGACCCCAGGGACACGAAG < 41bp 0.583166141816015 0.81094592896231 0.050016314 0.20411351 prediction 0.45555957429259 Functional Gain - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88423522 chr10:88423523 synonymous SNV . 0 22 hm5C_associated_SNPs_116159 0 0 0 0 1 OPN4 chr10:88423559 5'GT 88423559 Upstream 37bp
chr17 76136994 76136994 1 + C T rs139972217 76136993 + 76136973 76137013 41 GCCCGAGCGACTCTCCGGGCCCCAAGTACCCTGCCTCCCAA GCCCGAGCGACTCTCCGGGCCTCAAGTACCCTGCCTCCCAA < 41bp 0.557606061243601 0.785380376926867 0.19010377 0.5185678 prediction 0.455548631366531 Functional Gain - TMC8 ENSG00000167895 CDS Human protein_coding chr17:76136993 chr17:76136994 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_116162 0 0 0 0 1 TMC8 chr17:76136915 3'AG 76136915 Downstream 80bp
chr1 175116116 175116116 1 + T C HNSC 175116114 + 175116094 175116134 41 CATGAATTCTCCATTCCTTACGTGGAGTTGAAAATCCGCCC CATGAATTCTCCATTCCTTACGCGGAGTTGAAAATCCGCCC < 41bp 0.475206781651262 0.727770039840479 0.8221898 0.46906444 prediction 0.455540079680958 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175116114 chr1:175116116 nonsynonymous SNV 0.953 2 23 hm5C_associated_SNPs_116165 0 0 0 0 1 TNN chr1:175116067 3'AG 175116067 Downstream 50bp
chr16 66612849 66612849 1 + C T STAD 66612848 + 66612828 66612868 41 AAGTTGAAAGGAAGCTTTCCCCCGCCAAGGACGCCTACCCC AAGTTGAAAGGAAGCTTTCCCTCGCCAAGGACGCCTACCCC < 41bp 0.515634157767155 0.743399175461331 0.4171999 0.6538724 prediction 0.455530035388352 Functional Gain - CKLF-CMTM1;CMTM1 ENSG00000089505;ENSG00000254788 CDS Human other chr16:66612848 chr16:66612849 nonsynonymous SNV 0.004 2 22 hm5C_associated_SNPs_116166 0 0 1 0 1 CKLF-CMTM1;CMTM1 chr16:66612750 3'AG 66612750 Downstream 100bp
chr2 150325271 150325271 1 + C T GBM 150325270 + 150325250 150325290 41 ATCCACTGGCTGCAGAGACTCCGAGCATGAAGGCCACAAGG ATCCACTGGCTGCAGAGACTCTGAGCATGAAGGCCACAAGG < 41bp 0.495403804873698 0.72775966173963 0.10885367 0.075537324 prediction 0.45551932347926 Functional Gain - LYPD6 ENSG00000187123 CDS Human protein_coding chr2:150325270 chr2:150325271 synonymous SNV . 0 22 hm5C_associated_SNPs_116167 0 0 0 0 1 LYPD6 chr2:150325289 5'GT 150325289 Upstream 19bp
chr6 3017138 3017138 1 + C T rs1130428 3017137 + 3017117 3017157 41 GGGTAAACTAGCGCTCCTTTCCGTAACCACGGGAGGCACGG GGGTAAACTAGCGCTCCTTTCTGTAACCACGGGAGGCACGG < 41bp 0.471652992123907 0.727755432234741 0.21072689 0.13834655 prediction 0.455510864469482 Functional Gain - NQO2 ENSG00000124588 CDS Human protein_coding chr6:3017137 chr6:3017138 synonymous SNV . 0 22 hm5C_associated_SNPs_116168 0 0 1 0 1 NQO2 chr6:3017219 5'GT 3017219 Upstream 82bp
chr12 1893206 1893206 1 + C T rs185048932 1893205 + 1893185 1893225 41 CCTGTATGCTGCCCGGATCCCCGAACGCTTTTTCCCTGGCA CCTGTATGCTGCCCGGATCCCTGAACGCTTTTTCCCTGGCA < 41bp 0.580712910375442 0.808464907848781 0.051686257 0.044592917 prediction 0.455503994946679 Functional Gain - ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1893205 chr12:1893206 synonymous SNV . 0 22 hm5C_associated_SNPs_116170 0 0 1 0 1 ADIPOR2 chr12:1893239 5'GT 1893239 Upstream 34bp
chr9 139699828 139699828 1 + C T UCEC 139699827 + 139699807 139699847 41 AGTGAGGAGAAAAGAGACCTCCACAGCAGAAATGGAATACC AGTGAGGAGAAAAGAGACCTCTACAGCAGAAATGGAATACC < 41bp 0.474038495602827 0.727748879215594 0.30218744 0.79735976 prediction 0.455497758431188 Functional Gain - CCDC183 ENSG00000213213 CDS Human protein_coding chr9:139699827 chr9:139699828 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_116172 0 0 1 0 2 CCDC183 chr9:139699809 3'AG 139699809 Downstream 20bp
chr9 139699828 139699828 1 + C T UCEC 139699827 + 139699807 139699847 41 AGTGAGGAGAAAAGAGACCTCCACAGCAGAAATGGAATACC AGTGAGGAGAAAAGAGACCTCTACAGCAGAAATGGAATACC < 41bp 0.474038495602827 0.727748879215594 0.30218744 0.79735976 prediction 0.455497758431188 Functional Gain - CCDC183 ENSG00000213213 CDS Human protein_coding chr9:139699827 chr9:139699828 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_116172 0 0 1 0 2 CCDC183 chr9:139699909 5'GT 139699909 Upstream 82bp
chr1 156703827 156703827 1 + C T OV 156703826 + 156703806 156703846 41 CCAAACCAGCCCTCGTCACTCCCCACACCACGTGGTTAGGT CCAAACCAGCCCTCGTCACTCTCCACACCACGTGGTTAGGT < 41bp 0.460225984378517 0.72774827960902 0.048608214 0.87361413 prediction 0.455496559218039 Functional Gain - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156703826 chr1:156703827 synonymous SNV . 0 22 hm5C_associated_SNPs_116173 0 0 1 0 1 RRNAD1 chr1:156703801 3'AG 156703801 Downstream 27bp
chr1 171168585 171168585 1 + A G rs2020861 171168582 + 171168562 171168602 41 CTGGTGATTGGAATGGGAAACTCAGGCTCAGATATTGCTGT CTGGTGATTGGAATGGGAAACTCGGGCTCAGATATTGCTGT < 41bp 0.52201986805182 0.749766110210021 0.65377855 0.82432187 prediction 0.455492484316403 Functional Gain - FMO2 ENSG00000094963 CDS Human protein_coding chr1:171168582 chr1:171168585 synonymous SNV . 0 24 hm5C_associated_SNPs_116174 0 0 0 0 1 FMO2 chr1:171168627 5'GT 171168627 Upstream 43bp
chr19 4249263 4249263 1 + C T LIHC 4249262 + 4249242 4249282 41 CTTTGACCCATCAAAGATCCCCAAACTCAAGCTCCCCAAAG CTTTGACCCATCAAAGATCCCTAAACTCAAGCTCCCCAAAG < 41bp 0.472983886775939 0.727745927120532 0.16967127 0.05363983 prediction 0.455491854241064 Functional Gain - CCDC94 ENSG00000105248 CDS Human protein_coding chr19:4249262 chr19:4249263 synonymous SNV . 0 22 hm5C_associated_SNPs_116175 0 0 0 0 2 CCDC94 chr19:4249225 3'AG 4249225 Downstream 39bp
chr19 4249263 4249263 1 + C T LIHC 4249262 + 4249242 4249282 41 CTTTGACCCATCAAAGATCCCCAAACTCAAGCTCCCCAAAG CTTTGACCCATCAAAGATCCCTAAACTCAAGCTCCCCAAAG < 41bp 0.472983886775939 0.727745927120532 0.16967127 0.05363983 prediction 0.455491854241064 Functional Gain - CCDC94 ENSG00000105248 CDS Human protein_coding chr19:4249262 chr19:4249263 synonymous SNV . 0 22 hm5C_associated_SNPs_116175 0 0 0 0 2 CCDC94 chr19:4249325 5'GT 4249325 Upstream 63bp
chr20 44048200 44048200 1 + C T SKCM 44048199 + 44048179 44048219 41 GTTCCACACCAGCTACCACTCCCAGGCAGTGCATATCCGCC GTTCCACACCAGCTACCACTCTCAGGCAGTGCATATCCGCC < 41bp 0.517390696119734 0.745132843794644 0.06782189 0.030755848 prediction 0.455484295349821 Functional Gain - PIGT ENSG00000124155 CDS Human protein_coding chr20:44048199 chr20:44048200 synonymous SNV . 0 22 hm5C_associated_SNPs_116177 0 0 1 2 2 PIGT chr20:44048113 3'AG 44048113 Downstream 88bp
chr20 44048200 44048200 1 + C T SKCM 44048199 + 44048179 44048219 41 GTTCCACACCAGCTACCACTCCCAGGCAGTGCATATCCGCC GTTCCACACCAGCTACCACTCTCAGGCAGTGCATATCCGCC < 41bp 0.517390696119734 0.745132843794644 0.06782189 0.030755848 prediction 0.455484295349821 Functional Gain - PIGT ENSG00000124155 CDS Human protein_coding chr20:44048199 chr20:44048200 synonymous SNV . 0 22 hm5C_associated_SNPs_116177 0 0 1 2 2 PIGT chr20:44048144 3'AG 44048144 Downstream 57bp
chr19 50387558 50387558 1 + C T SKCM 50387557 + 50387537 50387577 41 CCAACAAGTTCTACGAGGGTCCCGAGAACCCGGGGCTGGGC CCAACAAGTTCTACGAGGGTCTCGAGAACCCGGGGCTGGGC < 41bp 0.59773267997196 0.825474803994828 0.2504277 0.36495748 prediction 0.455484248045736 Functional Gain - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50387557 chr19:50387558 nonsynonymous SNV 0.934 1 22 hm5C_associated_SNPs_116178 0 0 0 0 2 TBC1D17 chr19:50387510 3'AG 50387510 Downstream 49bp
chr19 50387558 50387558 1 + C T SKCM 50387557 + 50387537 50387577 41 CCAACAAGTTCTACGAGGGTCCCGAGAACCCGGGGCTGGGC CCAACAAGTTCTACGAGGGTCTCGAGAACCCGGGGCTGGGC < 41bp 0.59773267997196 0.825474803994828 0.2504277 0.36495748 prediction 0.455484248045736 Functional Gain - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50387557 chr19:50387558 nonsynonymous SNV 0.934 1 22 hm5C_associated_SNPs_116178 0 0 0 0 2 TBC1D17 chr19:50387626 5'GT 50387626 Upstream 69bp
chrX 49837186 49837186 1 + A G STAD 49837183 + 49837163 49837203 41 AGTCAACATGGGCCTTAATTCACAGTGTGAGTGATGCTTTT AGTCAACATGGGCCTTAATTCACGGTGTGAGTGATGCTTTT < 41bp 0.509035326122331 0.736774946522744 0.37918243 0.8974194 prediction 0.455479240800827 Functional Gain - CLCN5 ENSG00000171365 CDS Human protein_coding chrX:49837183 chrX:49837186 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_116179 0 0 0 0 2 CLCN5 chrX:49837144 3'AG 49837144 Downstream 43bp
chrX 49837186 49837186 1 + A G STAD 49837183 + 49837163 49837203 41 AGTCAACATGGGCCTTAATTCACAGTGTGAGTGATGCTTTT AGTCAACATGGGCCTTAATTCACGGTGTGAGTGATGCTTTT < 41bp 0.509035326122331 0.736774946522744 0.37918243 0.8974194 prediction 0.455479240800827 Functional Gain - CLCN5 ENSG00000171365 CDS Human protein_coding chrX:49837183 chrX:49837186 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_116179 0 0 0 0 2 CLCN5 chrX:49837243 5'GT 49837243 Upstream 58bp
chr8 67066314 67066314 1 + C A LIHC 67066313 + 67066293 67066333 41 ACCCACTGGCTCTGAGCAGACCACAGAGTCTGAAACTCCAG ACCCACTGGCTCTGAGCAGACAACAGAGTCTGAAACTCCAG < 41bp 0.567432951579726 0.795171370428283 0.16710186 0.38780645 prediction 0.455476837697114 Functional Gain - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67066313 chr8:67066314 synonymous SNV . 0 22 hm5C_associated_SNPs_116180 0 0 0 0 1 TRIM55 chr8:67066282 3'AG 67066282 Downstream 33bp
chr3 39170626 39170626 1 + C T UCEC 39170625 + 39170605 39170645 41 GGTGGCACACCAGAAGAGAACCGCATCACCATTGCCAACGT GGTGGCACACCAGAAGAGAACTGCATCACCATTGCCAACGT < 41bp 0.596158489256738 0.823888763380281 0.23734441 0.26761448 prediction 0.455460548247085 Functional Gain - TTC21A ENSG00000168026 CDS Human protein_coding chr3:39170625 chr3:39170626 nonsynonymous SNV 0.545 4 22 hm5C_associated_SNPs_116181 0 0 0 0 1 TTC21A chr3:39170563 3'AG 39170563 Downstream 64bp
chr5 141318089 141318089 1 + C T UCEC 141318088 + 141318068 141318108 41 TCTCACCTCTTCTTGTAGCCCCGGGGCCCAGCGACCTGACA TCTCACCTCTTCTTGTAGCCCTGGGGCCCAGCGACCTGACA < 41bp 0.516199611048933 0.743922862935346 0.86495686 0.48634574 prediction 0.455446503772826 Functional Gain - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141318088 chr5:141318089 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_116183 0 0 1 0 1 KIAA0141 chr5:141318086 3'AG 141318086 Downstream 4bp
chr19 11470604 11470604 1 + C T LUSC 11470603 + 11470583 11470623 41 GGCCTGCTGCCGCTTCAGCCCCCCAGTGCGGAGGCTGGTCC GGCCTGCTGCCGCTTCAGCCCTCCAGTGCGGAGGCTGGTCC < 41bp 0.577454799501855 0.805177430260596 0.06524441 0.94485474 prediction 0.455445261517481 Functional Gain - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11470603 chr19:11470604 synonymous SNV . 0 22 hm5C_associated_SNPs_116184 0 0 0 0 1 PLPPR2 chr19:11470632 5'GT 11470632 Upstream 29bp
chr3 52829632 52829632 1 + C G LUSC 52829631 + 52829611 52829651 41 TTTTTCAGAAACGGAGCCTCCCGGAAGGGGTAAGAACTTTC TTTTTCAGAAACGGAGCCTCCGGGAAGGGGTAAGAACTTTC < 41bp 0.650053621305444 0.877774639592098 0.37633553 0.5416916 prediction 0.455442036573308 Functional Gain - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52829631 chr3:52829632 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_116185 0 0 1 0 2 ITIH3 chr3:52829619 3'AG 52829619 Downstream 14bp
chr3 52829632 52829632 1 + C G LUSC 52829631 + 52829611 52829651 41 TTTTTCAGAAACGGAGCCTCCCGGAAGGGGTAAGAACTTTC TTTTTCAGAAACGGAGCCTCCGGGAAGGGGTAAGAACTTTC < 41bp 0.650053621305444 0.877774639592098 0.37633553 0.5416916 prediction 0.455442036573308 Functional Gain - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52829631 chr3:52829632 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_116185 0 0 1 0 2 ITIH3 chr3:52829639 5'GT 52829639 Upstream 8bp
chr16 58287928 58287928 1 + C T SKCM 58287927 + 58287907 58287947 41 AGGCAGGCGTAGATCCAAATCCCGGACAGGTATGGACCGTG AGGCAGGCGTAGATCCAAATCTCGGACAGGTATGGACCGTG < 41bp 0.561311274108257 0.789025172901988 0.29676837 0.37727407 prediction 0.455427797587463 Functional Gain - CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58287927 chr16:58287928 synonymous SNV . 0 22 hm5C_associated_SNPs_116187 0 0 1 0 1 CCDC113 chr16:58287902 3'AG 58287902 Downstream 27bp
chr16 2514544 2514544 1 + C T COAD 2514543 + 2514523 2514563 41 GTCCTGATGGCTGAACTCCTCCCCCTGGTAAGCGCTGCACA GTCCTGATGGCTGAACTCCTCTCCCTGGTAAGCGCTGCACA < 41bp 0.498261469630472 0.727711412015826 0.31466183 0.87187946 prediction 0.455422824031653 Functional Gain - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2514543 chr16:2514544 nonsynonymous SNV 0.434 4 22 hm5C_associated_SNPs_116188 0 0 1 0 1 C16orf59 chr16:2514523 3'AG 2514523 Downstream 22bp
chr2 106690408 106690408 1 + T C UCEC 106690406 + 106690386 106690426 41 GCCAAAGAATTCCTTGGCAGCCTGAAGCGCCAGAAGCGGCA GCCAAAGAATTCCTTGGCAGCCCGAAGCGCCAGAAGCGGCA < 41bp 0.44252347083325 0.727701492226519 0.09402269 0.064712465 prediction 0.455402984453038 Functional Gain - C2orf40 ENSG00000119147 CDS Human protein_coding chr2:106690406 chr2:106690408 nonsynonymous SNV 0.858 0 23 hm5C_associated_SNPs_116191 0 0 0 0 2 C2orf40 chr2:106690342 3'AG 106690342 Downstream 67bp
chr2 106690408 106690408 1 + T C UCEC 106690406 + 106690386 106690426 41 GCCAAAGAATTCCTTGGCAGCCTGAAGCGCCAGAAGCGGCA GCCAAAGAATTCCTTGGCAGCCCGAAGCGCCAGAAGCGGCA < 41bp 0.44252347083325 0.727701492226519 0.09402269 0.064712465 prediction 0.455402984453038 Functional Gain - C2orf40 ENSG00000119147 CDS Human protein_coding chr2:106690406 chr2:106690408 nonsynonymous SNV 0.858 0 23 hm5C_associated_SNPs_116191 0 0 0 0 2 C2orf40 chr2:106690499 5'GT 106690499 Upstream 92bp
chr1 28211920 28211920 1 + A G rs200906638 28211917 + 28211897 28211937 41 CGTACAGCAAGATTCCTGCCCACAGGAAGGGCCACAGGCCC CGTACAGCAAGATTCCTGCCCACGGGAAGGGCCACAGGCCC < 41bp 0.554515893304848 0.782215210128892 0.27331072 0.7751037 prediction 0.455398633648089 Functional Gain - THEMIS2 ENSG00000130775 CDS Human protein_coding chr1:28211917 chr1:28211920 nonsynonymous SNV 0.007 1 24 hm5C_associated_SNPs_116192 0 0 0 0 1 THEMIS2 chr1:28211962 5'GT 28211962 Upstream 43bp
chr3 9944618 9944618 1 + T C STAD 9944616 + 9944596 9944636 41 GCCCTAATTGCACAGAAGCCCATGGGGAGCTCCAGACTGGC GCCCTAATTGCACAGAAGCCCACGGGGAGCTCCAGACTGGC < 41bp 0.525339683622159 0.753033562472965 0.3951731 0.54831636 prediction 0.455387757701612 Functional Gain - IL17RE ENSG00000163701 CDS Human protein_coding chr3:9944616 chr3:9944618 nonsynonymous SNV 0.900 4 23 hm5C_associated_SNPs_116194 0 0 0 0 1 IL17RE chr3:9944574 3'AG 9944574 Downstream 45bp
chr11 120107371 120107371 1 + A G rs144396126 120107368 + 120107348 120107388 41 TCTCACTCCAGCCCAGAGCTCAAAAAACCGGTTTCATGGAG TCTCACTCCAGCCCAGAGCTCAAGAAACCGGTTTCATGGAG < 41bp 0.519411371741846 0.747099961618138 0.212769 0.59355366 prediction 0.455377179752585 Functional Gain - POU2F3 ENSG00000137709 UTR5 Human protein_coding chr11:120107368 chr11:120107371 . . 0 24 hm5C_associated_SNPs_116199 0 0 0 0 1 POU2F3 chr11:120107416 5'GT 120107416 Upstream 46bp
chr11 46332654 46332654 1 + C A SKCM 46332653 + 46332633 46332673 41 AGCGACGGCTCCCAGAGTCCCCGCTCTCTGCCCCCCTCCAG AGCGACGGCTCCCAGAGTCCCAGCTCTCTGCCCCCCTCCAG < 41bp 0.467841695228337 0.72768804063633 0.014590889 0.030065835 prediction 0.455376081272661 Functional Gain - CREB3L1 ENSG00000157613 CDS Human protein_coding chr11:46332653 chr11:46332654 nonsynonymous SNV 0.999 0 22 hm5C_associated_SNPs_116200 0 0 0 0 2 CREB3L1 chr11:46332583 3'AG 46332583 Downstream 72bp
chr11 46332654 46332654 1 + C A SKCM 46332653 + 46332633 46332673 41 AGCGACGGCTCCCAGAGTCCCCGCTCTCTGCCCCCCTCCAG AGCGACGGCTCCCAGAGTCCCAGCTCTCTGCCCCCCTCCAG < 41bp 0.467841695228337 0.72768804063633 0.014590889 0.030065835 prediction 0.455376081272661 Functional Gain - CREB3L1 ENSG00000157613 CDS Human protein_coding chr11:46332653 chr11:46332654 nonsynonymous SNV 0.999 0 22 hm5C_associated_SNPs_116200 0 0 0 0 2 CREB3L1 chr11:46332740 5'GT 46332740 Upstream 87bp
chr11 113140986 113140986 1 - G A SKCM 113140987 - 113140967 113141007 41 GCAGGTGATGTCCACAACCACCAGGAGCAGGACGAAGATGA GCAGGTGATGTCCACAACCACTAGGAGCAGGACGAAGATGA < 41bp 0.549156591139892 0.776830899189719 0.23630217 0.17605889 prediction 0.455348616099655 Functional Gain - NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113140987 chr11:113140986 synonymous SNV . 0 22 hm5C_associated_SNPs_116206 0 0 0 0 1 NCAM1 chr11:113140926 5'GT 113140926 Upstream 61bp
chr3 9952706 9952706 1 + A G rs279572 9952703 + 9952683 9952723 41 TGCAAAGACCTCCCGAATGCCACAGCTCGAGAGTCAGATGG TGCAAAGACCTCCCGAATGCCACGGCTCGAGAGTCAGATGG < 41bp 0.528746069222736 0.756417038824836 0.055238098 0.07683945 prediction 0.4553419392042 Functional Gain - IL17RE ENSG00000163701 CDS Human protein_coding chr3:9952703 chr3:9952706 synonymous SNV . 0 24 hm5C_associated_SNPs_116208 0 0 1 0 1 IL17RE chr3:9952724 5'GT 9952724 Upstream 19bp
chr7 133886296 133886296 1 + A G LGG 133886293 + 133886273 133886313 41 TAGAGAATACCTTGGATTGACTGAGGAACCTGCCAAGAGTT TAGAGAATACCTTGGATTGACTGGGGAACCTGCCAAGAGTT < 41bp 0.553300698842253 0.780968647426028 0.5604371 0.8128439 prediction 0.455335897167549 Functional Gain - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133886293 chr7:133886296 nonsynonymous SNV 0.014 1 24 hm5C_associated_SNPs_116209 0 0 0 0 2 LRGUK chr7:133886233 3'AG 133886233 Downstream 64bp
chr7 133886296 133886296 1 + A G LGG 133886293 + 133886273 133886313 41 TAGAGAATACCTTGGATTGACTGAGGAACCTGCCAAGAGTT TAGAGAATACCTTGGATTGACTGGGGAACCTGCCAAGAGTT < 41bp 0.553300698842253 0.780968647426028 0.5604371 0.8128439 prediction 0.455335897167549 Functional Gain - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133886293 chr7:133886296 nonsynonymous SNV 0.014 1 24 hm5C_associated_SNPs_116209 0 0 0 0 2 LRGUK chr7:133886328 5'GT 133886328 Upstream 33bp
chr18 61652476 61652476 1 + C T rs575388514 61652475 + 61652455 61652495 41 CGATGACAACACGGACCTCGCCGTGGTAAGCTCCAGGCAAT CGATGACAACACGGACCTCGCTGTGGTAAGCTCCAGGCAAT < 41bp 0.535106389286875 0.762770806504973 0.64945066 0.27838153 prediction 0.455328834436196 Functional Gain - SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61652475 chr18:61652476 synonymous SNV . 0 22 hm5C_associated_SNPs_116210 0 0 0 0 1 SERPINB8 chr18:61652479 5'GT 61652479 Upstream 4bp
chr19 5751803 5751803 1 + T C rs139062634 5751801 + 5751781 5751821 41 GTGAATATCCAGGCGCTTCTCATGGACCCTGAACTCCACGT GTGAATATCCAGGCGCTTCTCACGGACCCTGAACTCCACGT < 41bp 0.604605181506644 0.832269193269752 0.8228943 0.8726317 prediction 0.455328023526217 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5751801 chr19:5751803 nonsynonymous SNV 0.368 3 23 hm5C_associated_SNPs_116211 0 0 0 0 1 CATSPERD chr19:5751834 5'GT 5751834 Upstream 32bp
chr1 43774659 43774659 1 + C T PAAD 43774658 + 43774638 43774678 41 GAGTGTCCTTTCTCCCCAGACCGGATCCCCCAGATCCTCAA GAGTGTCCTTTCTCCCCAGACTGGATCCCCCAGATCCTCAA < 41bp 0.566819075895519 0.794480566854748 0.34136006 0.4036482 prediction 0.455322981918456 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43774658 chr1:43774659 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_116212 0 0 0 0 1 TIE1 chr1:43774657 3'AG 43774657 Downstream 3bp
chr9 130475418 130475418 1 + C T OV 130475417 + 130475397 130475437 41 AGGTCCACATCCCACCCAACCCCCAGGACCTCAGGCTGCTG AGGTCCACATCCCACCCAACCTCCAGGACCTCAGGCTGCTG < 41bp 0.597973720886553 0.825633647119576 0.093667805 0.93365145 prediction 0.455319852466045 Functional Gain - CFAP157 ENSG00000160401 CDS Human protein_coding chr9:130475417 chr9:130475418 nonsynonymous SNV 0.982 0 22 hm5C_associated_SNPs_116214 0 0 0 0 1 CFAP157 chr9:130475485 5'GT 130475485 Upstream 68bp
chr11 126276855 126276855 1 + C T SKCM 126276854 + 126276834 126276874 41 CCAGTTTTTATTTTCCCATCCCAGAGAAGAAGGAGCCGTGC CCAGTTTTTATTTTCCCATCCTAGAGAAGAAGGAGCCGTGC < 41bp 0.471390038849936 0.727653124615691 0.9048695 0.3891052 prediction 0.455306249231382 Functional Gain - ST3GAL4 ENSG00000110080 CDS Human protein_coding chr11:126276854 chr11:126276855 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_116215 0 0 1 0 2 ST3GAL4 chr11:126276838 3'AG 126276838 Downstream 18bp
chr11 126276855 126276855 1 + C T SKCM 126276854 + 126276834 126276874 41 CCAGTTTTTATTTTCCCATCCCAGAGAAGAAGGAGCCGTGC CCAGTTTTTATTTTCCCATCCTAGAGAAGAAGGAGCCGTGC < 41bp 0.471390038849936 0.727653124615691 0.9048695 0.3891052 prediction 0.455306249231382 Functional Gain - ST3GAL4 ENSG00000110080 CDS Human protein_coding chr11:126276854 chr11:126276855 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_116215 0 0 1 0 2 ST3GAL4 chr11:126276918 5'GT 126276918 Upstream 64bp
chr14 24770858 24770858 1 + T A UCEC 24770854 + 24770834 24770874 41 AGCTCAGGAATGTAAGCCAGCTGATTTTGAAGTCCCTGAAA AGCTCAGGAATGTAAGCCAGCTGAATTTGAAGTCCCTGAAA < 41bp 0.395997339700029 0.727649791690174 0.11807528 0.2888325 prediction 0.455299583380348 Functional Gain - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24770854 chr14:24770858 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_116217 0 0 1 0 2 NOP9 chr14:24770818 3'AG 24770818 Downstream 41bp
chr14 24770858 24770858 1 + T A UCEC 24770854 + 24770834 24770874 41 AGCTCAGGAATGTAAGCCAGCTGATTTTGAAGTCCCTGAAA AGCTCAGGAATGTAAGCCAGCTGAATTTGAAGTCCCTGAAA < 41bp 0.395997339700029 0.727649791690174 0.11807528 0.2888325 prediction 0.455299583380348 Functional Gain - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24770854 chr14:24770858 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_116217 0 0 1 0 2 NOP9 chr14:24770928 5'GT 24770928 Upstream 71bp
chr22 40343171 40343171 1 + A G UCEC 40343168 + 40343148 40343188 41 GTGAGGATGAACTGAGCTTTCACACTGGAGATGTTTTGAAG GTGAGGATGAACTGAGCTTTCACGCTGGAGATGTTTTGAAG < 41bp 0.491388447217859 0.727645871377726 0.2552907 0.32695773 prediction 0.455291742755452 Functional Gain - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40343168 chr22:40343171 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_116219 0 0 1 2 2 GRAP2 chr22:40343097 3'AG 40343097 Downstream 75bp
chr22 40343171 40343171 1 + A G UCEC 40343168 + 40343148 40343188 41 GTGAGGATGAACTGAGCTTTCACACTGGAGATGTTTTGAAG GTGAGGATGAACTGAGCTTTCACGCTGGAGATGTTTTGAAG < 41bp 0.491388447217859 0.727645871377726 0.2552907 0.32695773 prediction 0.455291742755452 Functional Gain - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40343168 chr22:40343171 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_116219 0 0 1 2 2 GRAP2 chr22:40343188 5'GT 40343188 Upstream 18bp
chr1 46733194 46733194 1 + C T COAD 46733193 + 46733173 46733213 41 CTGGACAGCTTGAACACCAGCCGGCGGGTGCTCATCTCCGG CTGGACAGCTTGAACACCAGCTGGCGGGTGCTCATCTCCGG < 41bp 0.478315083058853 0.727634646447676 0.15751114 0.16917804 prediction 0.455269292895351 Functional Gain - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46733193 chr1:46733194 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_116222 0 0 1 0 2 RAD54L chr1:46733131 3'AG 46733131 Downstream 64bp
chr1 46733194 46733194 1 + C T COAD 46733193 + 46733173 46733213 41 CTGGACAGCTTGAACACCAGCCGGCGGGTGCTCATCTCCGG CTGGACAGCTTGAACACCAGCTGGCGGGTGCTCATCTCCGG < 41bp 0.478315083058853 0.727634646447676 0.15751114 0.16917804 prediction 0.455269292895351 Functional Gain - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46733193 chr1:46733194 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_116222 0 0 1 0 2 RAD54L chr1:46733281 5'GT 46733281 Upstream 88bp
chr19 1254983 1254983 1 + C A LIHC 1254982 + 1254962 1255002 41 CCCCAGGGGCCAGCCCTGCCCCCCGCTCCCGAAAACCCGGC CCCCAGGGGCCAGCCCTGCCCACCGCTCCCGAAAACCCGGC < 41bp 0.466692436156893 0.727634617422297 0.12670332 0.11935264 prediction 0.455269234844595 Functional Gain - MIDN ENSG00000167470 CDS Human protein_coding chr19:1254982 chr19:1254983 nonsynonymous SNV 0.431 1 22 hm5C_associated_SNPs_116223 0 0 1 0 2 MIDN chr19:1254901 3'AG 1254901 Downstream 83bp
chr19 1254983 1254983 1 + C A LIHC 1254982 + 1254962 1255002 41 CCCCAGGGGCCAGCCCTGCCCCCCGCTCCCGAAAACCCGGC CCCCAGGGGCCAGCCCTGCCCACCGCTCCCGAAAACCCGGC < 41bp 0.466692436156893 0.727634617422297 0.12670332 0.11935264 prediction 0.455269234844595 Functional Gain - MIDN ENSG00000167470 CDS Human protein_coding chr19:1254982 chr19:1254983 nonsynonymous SNV 0.431 1 22 hm5C_associated_SNPs_116223 0 0 1 0 2 MIDN chr19:1255060 5'GT 1255060 Upstream 78bp
chr6 27677951 27677951 1 + A G rs568053251 27677948 + 27677928 27677968 41 CTAGAGTGCAGTGGCGCGATCTCAGCTCACTGAAACCTCTG CTAGAGTGCAGTGGCGCGATCTCGGCTCACTGAAACCTCTG < 41bp 0.494658107594883 0.727633973807687 0.4358796 0.78788984 prediction 0.455267947615373 Functional Gain - LINC01012 ENSG00000216676;ENSG00000216915 intergenic Human other chr6:27677948 chr6:27677951 . . 0 24 hm5C_associated_SNPs_116225 0 0 0 0 1 LINC01012 chr6:27677903 3'AG 27677903 Downstream 49bp
chr3 186390628 186390628 1 + C T SKCM 186390627 + 186390607 186390647 41 ACTTCTCTGTGCGGAACTGCCCCAGACACCATTTCCCCAGA ACTTCTCTGTGCGGAACTGCCTCAGACACCATTTCCCCAGA < 41bp 0.584667293472829 0.812296147758758 0.081867725 0.07807401 prediction 0.455257708571858 Functional Gain - HRG ENSG00000113905 CDS Human protein_coding chr3:186390627 chr3:186390628 nonsynonymous SNV 0.205 1 22 hm5C_associated_SNPs_116230 0 0 0 0 2 HRG chr3:186390576 3'AG 186390576 Downstream 53bp
chr3 186390628 186390628 1 + C T SKCM 186390627 + 186390607 186390647 41 ACTTCTCTGTGCGGAACTGCCCCAGACACCATTTCCCCAGA ACTTCTCTGTGCGGAACTGCCTCAGACACCATTTCCCCAGA < 41bp 0.584667293472829 0.812296147758758 0.081867725 0.07807401 prediction 0.455257708571858 Functional Gain - HRG ENSG00000113905 CDS Human protein_coding chr3:186390627 chr3:186390628 nonsynonymous SNV 0.205 1 22 hm5C_associated_SNPs_116230 0 0 0 0 2 HRG chr3:186390656 5'GT 186390656 Upstream 29bp
chr2 241987826 241987826 1 + C T HNSC 241987825 + 241987805 241987845 41 GGGCTACGTGTGCGAGTGCCCCGAAGGCTTCATGGGCCTGG GGGCTACGTGTGCGAGTGCCCTGAAGGCTTCATGGGCCTGG < 41bp 0.484567511244908 0.727611475636321 0.57700545 0.40944222 prediction 0.455222951272642 Functional Gain - SNED1 ENSG00000162804 CDS Human protein_coding chr2:241987825 chr2:241987826 synonymous SNV . 0 22 hm5C_associated_SNPs_116236 0 0 1 0 1 SNED1 chr2:241987732 3'AG 241987732 Downstream 95bp
chr4 79525461 79525461 1 + C T SKCM 79525460 + 79525440 79525480 41 ACTGATGAGTTTACTCTGAACCGAATAATGGTGTCCAGATC ACTGATGAGTTTACTCTGAACTGAATAATGGTGTCCAGATC < 41bp 0.481843234973571 0.72760549774951 0.24939606 0.14360207 prediction 0.455210995499021 Functional Gain - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79525460 chr4:79525461 stopgain 0.996 1 22 hm5C_associated_SNPs_116238 0 0 0 0 1 ANXA3 chr4:79525553 5'GT 79525553 Upstream 93bp
chr10 37430667 37430667 1 + C A HNSC 37430666 + 37430646 37430686 41 AAGGAACATCTGCAGGAACACCTGATGAGGCTGCACCCTTG AAGGAACATCTGCAGGAACACATGATGAGGCTGCACCCTTG < 41bp 0.475301935839008 0.727600452123485 0.15610889 0.16988355 prediction 0.455200904246969 Functional Gain - ANKRD30A ENSG00000148513 CDS Human protein_coding chr10:37430666 chr10:37430667 nonsynonymous SNV 0.001 3 22 hm5C_associated_SNPs_116241 0 0 0 0 1 ANKRD30A chr10:37430646 3'AG 37430646 Downstream 22bp
chr1 6648369 6648369 1 + C G rs143591275 6648368 + 6648348 6648388 41 CAAGCACAACCGCACCCACACCGGGGAAAGGCCCTTCAGTT CAAGCACAACCGCACCCACACGGGGGAAAGGCCCTTCAGTT < 41bp 0.660840293528055 0.888440597959329 0.8641044 0.9094565 prediction 0.455200608862549 Functional Gain - ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6648368 chr1:6648369 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_116242 0 0 1 0 1 ZBTB48 chr1:6648338 3'AG 6648338 Downstream 32bp
chr4 74274465 74274465 1 + C T SKCM 74274464 + 74274444 74274484 41 ACCTCCCCCGATTGGTGAGACCAGAGGTTGATGTGATGTGC ACCTCCCCCGATTGGTGAGACTAGAGGTTGATGTGATGTGC < 41bp 0.544445250787884 0.772038232647554 0.18564308 0.051477432 prediction 0.455185963719341 Functional Gain - ALB ENSG00000163631 CDS Human protein_coding chr4:74274464 chr4:74274465 nonsynonymous SNV 0.060 3 22 hm5C_associated_SNPs_116243 0 0 1 4 1 ALB chr4:74274522 5'GT 74274522 Upstream 58bp
chr7 137776536 137776536 1 + C A LUAD 137776535 + 137776515 137776555 41 TATGGGCTACAAATCATGTCCCAGAGATGGTCCGCCCAACC TATGGGCTACAAATCATGTCCAAGAGATGGTCCGCCCAACC < 41bp 0.477357786299705 0.72758331663774 0.22964996 0.22018942 prediction 0.45516663327548 Functional Gain - AKR1D1 ENSG00000122787 CDS Human protein_coding chr7:137776535 chr7:137776536 nonsynonymous SNV 0.012 4 22 hm5C_associated_SNPs_116251 0 0 1 2 1 AKR1D1 chr7:137776630 5'GT 137776630 Upstream 95bp
chr18 59992591 59992591 1 + C G rs35589394 59992590 + 59992570 59992610 41 CAGCCTGTCCCGCGCCATGGCCCCGCGCGCCCGGCGGCGCC CAGCCTGTCCCGCGCCATGGCGCCGCGCGCCCGGCGGCGCC < 41bp 0.640937885166404 0.868516907361041 0.22240275 0.5295951 prediction 0.455158044389274 Functional Gain - TNFRSF11A ENSG00000141655 CDS Human protein_coding chr18:59992590 chr18:59992591 synonymous SNV . 0 22 hm5C_associated_SNPs_116252 3 0 1 0 1 TNFRSF11A chr18:59992660 5'GT 59992660 Upstream 70bp
chr17 32614213 32614213 1 + C T SKCM 32614212 + 32614192 32614232 41 ATCACCAGTGGCAAATGTCCCCAGAAAGCTGTGATGTAAGT ATCACCAGTGGCAAATGTCCCTAGAAAGCTGTGATGTAAGT < 41bp 0.551951715066304 0.779525575728068 0.12443 0.17416063 prediction 0.455147721323528 Functional Gain - CCL11 ENSG00000172156 CDS Human protein_coding chr17:32614212 chr17:32614213 stopgain 0.016 0 22 hm5C_associated_SNPs_116255 0 0 0 0 2 CCL11 chr17:32614115 3'AG 32614115 Downstream 99bp
chr17 32614213 32614213 1 + C T SKCM 32614212 + 32614192 32614232 41 ATCACCAGTGGCAAATGTCCCCAGAAAGCTGTGATGTAAGT ATCACCAGTGGCAAATGTCCCTAGAAAGCTGTGATGTAAGT < 41bp 0.551951715066304 0.779525575728068 0.12443 0.17416063 prediction 0.455147721323528 Functional Gain - CCL11 ENSG00000172156 CDS Human protein_coding chr17:32614212 chr17:32614213 stopgain 0.016 0 22 hm5C_associated_SNPs_116255 0 0 0 0 2 CCL11 chr17:32614226 5'GT 32614226 Upstream 14bp
chr17 53828793 53828793 1 + C G rs56851766 53828789 + 53828769 53828809 41 GGGGCGGTGCCTCCAAGTGACTGCCGTGCAGATCCAGGGGA GGGGCGGTGCCTCCAAGTGACTGCGGTGCAGATCCAGGGGA < 41bp 0.435793562677975 0.727572014999193 0.12114611 0.38515627 prediction 0.455144029998386 Functional Gain - PCTP ENSG00000141179 UTR5 Human protein_coding chr17:53828789 chr17:53828793 . . 0 25 hm5C_associated_SNPs_116257 0 0 1 0 1 PCTP chr17:53828838 5'GT 53828838 Upstream 46bp
chr20 39721181 39721181 1 + C A COAD 39721180 + 39721160 39721200 41 ACATAAAGGTCCAGTATTTGCCCCACCATATGAGCCTCTTC ACATAAAGGTCCAGTATTTGCACCACCATATGAGCCTCTTC < 41bp 0.557036079107055 0.78459242185672 0.017587036 0.020753145 prediction 0.455112685499331 Functional Gain - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721180 chr20:39721181 synonymous SNV . 0 22 hm5C_associated_SNPs_116263 0 0 1 3 2 TOP1 chr20:39721112 3'AG 39721112 Downstream 70bp
chr20 39721181 39721181 1 + C A COAD 39721180 + 39721160 39721200 41 ACATAAAGGTCCAGTATTTGCCCCACCATATGAGCCTCTTC ACATAAAGGTCCAGTATTTGCACCACCATATGAGCCTCTTC < 41bp 0.557036079107055 0.78459242185672 0.017587036 0.020753145 prediction 0.455112685499331 Functional Gain - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721180 chr20:39721181 synonymous SNV . 0 22 hm5C_associated_SNPs_116263 0 0 1 3 2 TOP1 chr20:39721227 5'GT 39721227 Upstream 47bp
chr17 4798486 4798486 1 + C T UCEC 4798485 + 4798465 4798505 41 CACAGTGAGACCCCTGAGATCCGGAAGTACAAGAAGCGATT CACAGTGAGACCCCTGAGATCTGGAAGTACAAGAAGCGATT < 41bp 0.467231100534362 0.727550495303205 0.8898864 0.4887197 prediction 0.45510099060641 Functional Gain - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4798485 chr17:4798486 nonsynonymous SNV 0.869 4 22 hm5C_associated_SNPs_116265 0 0 1 0 1 MINK1 chr17:4798537 5'GT 4798537 Upstream 52bp
chrX 155231146 155231146 1 + C G LUAD 155231145 + 155231125 155231165 41 TCATGCTGTGGCTGGTGGTTCCAGGCTGCACGCTCCATTCT TCATGCTGTGGCTGGTGGTTCGAGGCTGCACGCTCCATTCT < 41bp 0.414237529818103 0.727549673294676 0.47350353 0.7835556 prediction 0.455099346589352 Functional Gain - IL9R ENSG00000124334 CDS Human protein_coding chrX:155231145 chrX:155231146 nonsynonymous SNV 0.005 1 22 hm5C_associated_SNPs_116266 0 0 0 0 1 IL9R chrX:155231073 3'AG 155231073 Downstream 74bp
chr14 71109182 71109182 1 + C G rs564967773 71109181 + 71109161 71109201 41 CCCGGCTGGGGCCCTGAAGCCCGGCCGCCTCTCGGAGGAGC CCCGGCTGGGGCCCTGAAGCCGGGCCGCCTCTCGGAGGAGC < 41bp 0.646268999004772 0.873818654150157 0.2898414 0.8848103 prediction 0.45509931029077 Functional Gain - TTC9 ENSG00000133985 CDS Human protein_coding chr14:71109181 chr14:71109182 synonymous SNV . 0 22 hm5C_associated_SNPs_116267 0 0 0 0 1 TTC9 chr14:71109252 5'GT 71109252 Upstream 71bp
chr12 122252738 122252738 1 + A G UCEC 122252735 + 122252715 122252755 41 TGCTGGTGGTCCTCAAAGAACTCAAGGCCATCATGAAGCGT TGCTGGTGGTCCTCAAAGAACTCGAGGCCATCATGAAGCGT < 41bp 0.484099451007383 0.727540265113578 0.0750885 0.17323637 prediction 0.455080530227155 Functional Gain - SETD1B ENSG00000139718 CDS Human protein_coding chr12:122252735 chr12:122252738 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_116268 0 0 0 0 1 SETD1B chr12:122252836 5'GT 122252836 Upstream 99bp
chr17 34165489 34165489 1 + C A LIHC 34165488 + 34165468 34165508 41 CAGACAAGGACACAGGAAAGCCAAAGGGGGAGGCAACAGTG CAGACAAGGACACAGGAAAGCAAAAGGGGGAGGCAACAGTG < 41bp 0.468836758845805 0.727538101341521 0.17863056 0.16144493 prediction 0.455076202683043 Functional Gain - TAF15 ENSG00000172660 CDS Human other chr17:34165488 chr17:34165489 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_116269 0 0 1 0 2 TAF15 chr17:34165428 3'AG 34165428 Downstream 62bp
chr17 34165489 34165489 1 + C A LIHC 34165488 + 34165468 34165508 41 CAGACAAGGACACAGGAAAGCCAAAGGGGGAGGCAACAGTG CAGACAAGGACACAGGAAAGCAAAAGGGGGAGGCAACAGTG < 41bp 0.468836758845805 0.727538101341521 0.17863056 0.16144493 prediction 0.455076202683043 Functional Gain - TAF15 ENSG00000172660 CDS Human other chr17:34165488 chr17:34165489 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_116269 0 0 1 0 2 TAF15 chr17:34165557 5'GT 34165557 Upstream 69bp
chr3 111432914 111432914 1 + C T SKCM 111432913 + 111432893 111432933 41 GTCTCCCAAGCGATCCTCACCCCCAGAGTGAAGACCATTGC GTCTCCCAAGCGATCCTCACCTCCAGAGTGAAGACCATTGC < 41bp 0.612073093043602 0.839606588276308 0.20390546 0.92180586 prediction 0.455066990465412 Functional Gain - PLCXD2 ENSG00000240891 CDS Human protein_coding chr3:111432913 chr3:111432914 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_116272 0 0 0 0 1 PLCXD2 chr3:111432975 5'GT 111432975 Upstream 62bp
chr1 45079884 45079884 1 + C T SKCM 45079883 + 45079863 45079903 41 GACAGCCAGGCCCCAATTTGCCCCATCTGCCAGGTCCTGCT GACAGCCAGGCCCCAATTTGCTCCATCTGCCAGGTCCTGCT < 41bp 0.608804151095516 0.836330169936063 0.2789505 0.90538275 prediction 0.455052037681094 Functional Gain - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45079883 chr1:45079884 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_116274 0 0 1 0 2 RNF220 chr1:45079837 3'AG 45079837 Downstream 48bp
chr1 45079884 45079884 1 + C T SKCM 45079883 + 45079863 45079903 41 GACAGCCAGGCCCCAATTTGCCCCATCTGCCAGGTCCTGCT GACAGCCAGGCCCCAATTTGCTCCATCTGCCAGGTCCTGCT < 41bp 0.608804151095516 0.836330169936063 0.2789505 0.90538275 prediction 0.455052037681094 Functional Gain - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45079883 chr1:45079884 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_116274 0 0 1 0 2 RNF220 chr1:45079969 5'GT 45079969 Upstream 86bp
chr11 134188628 134188628 1 + C T SKCM 134188627 + 134188607 134188647 41 TTCCTGGAGTTTGGCTTCATCCAGAAGACAATGAGGTATGT TTCCTGGAGTTTGGCTTCATCTAGAAGACAATGAGGTATGT < 41bp 0.574807534456382 0.802331722527529 0.36723542 0.24762753 prediction 0.455048376142293 Functional Gain - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134188627 chr11:134188628 nonsynonymous SNV 0.595 2 22 hm5C_associated_SNPs_116275 0 0 0 1 1 GLB1L3 chr11:134188641 5'GT 134188641 Upstream 14bp
chr7 44151145 44151145 1 + C T PRAD 44151144 + 44151124 44151164 41 GAGGAGTGCCCCACCATCACCCGCACTTACAGCCTGGGCAA GAGGAGTGCCCCACCATCACCTGCACTTACAGCCTGGGCAA < 41bp 0.586546695394414 0.814070492248504 0.048876643 0.15466335 prediction 0.45504759370818 Functional Gain - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44151144 chr7:44151145 nonsynonymous SNV 0.979 3 22 hm5C_associated_SNPs_116276 0 0 0 0 2 AEBP1 chr7:44151106 3'AG 44151106 Downstream 40bp
chr7 44151145 44151145 1 + C T PRAD 44151144 + 44151124 44151164 41 GAGGAGTGCCCCACCATCACCCGCACTTACAGCCTGGGCAA GAGGAGTGCCCCACCATCACCTGCACTTACAGCCTGGGCAA < 41bp 0.586546695394414 0.814070492248504 0.048876643 0.15466335 prediction 0.45504759370818 Functional Gain - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44151144 chr7:44151145 nonsynonymous SNV 0.979 3 22 hm5C_associated_SNPs_116276 0 0 0 0 2 AEBP1 chr7:44151229 5'GT 44151229 Upstream 85bp
chr17 12666448 12666448 1 + C A ESCA 12666447 + 12666427 12666467 41 TCAAAAAGTCCCAAAGATACCCAGATCTTCCCGAAGTCCAA TCAAAAAGTCCCAAAGATACCAAGATCTTCCCGAAGTCCAA < 41bp 0.46694214539884 0.727521560391224 0.20483267 0.080638856 prediction 0.455043120782449 Functional Gain - MYOCD ENSG00000141052 CDS Human protein_coding chr17:12666447 chr17:12666448 synonymous SNV . 0 22 hm5C_associated_SNPs_116277 0 0 0 0 1 MYOCD chr17:12666390 3'AG 12666390 Downstream 59bp
chr1 95616939 95616939 1 + T C LIHC 95616937 + 95616917 95616957 41 GTGACAAATTTTTTATAATGCATCATTGTGCGTCCCTGTAT GTGACAAATTTTTTATAATGCACCATTGTGCGTCCCTGTAT < 41bp 0.435954356285951 0.727520124109522 0.020910501 0.007486582 prediction 0.455040248219045 Functional Gain - TMEM56;TMEM56-RWDD3 ENSG00000152078;ENSG00000271092 CDS Human other chr1:95616937 chr1:95616939 synonymous SNV . 0 23 hm5C_associated_SNPs_116278 0 0 1 0 2 TMEM56;TMEM56-RWDD3 chr1:95616881 3'AG 95616881 Downstream 59bp
chr1 95616939 95616939 1 + T C LIHC 95616937 + 95616917 95616957 41 GTGACAAATTTTTTATAATGCATCATTGTGCGTCCCTGTAT GTGACAAATTTTTTATAATGCACCATTGTGCGTCCCTGTAT < 41bp 0.435954356285951 0.727520124109522 0.020910501 0.007486582 prediction 0.455040248219045 Functional Gain - TMEM56;TMEM56-RWDD3 ENSG00000152078;ENSG00000271092 CDS Human other chr1:95616937 chr1:95616939 synonymous SNV . 0 23 hm5C_associated_SNPs_116278 0 0 1 0 2 TMEM56;TMEM56-RWDD3 chr1:95616975 5'GT 95616975 Upstream 37bp
chr22 45826822 45826822 1 + C T rs151218145 45826821 + 45826801 45826841 41 CAGCGAGACCTGGACTGGGACCGGCGGAGGATTCAGGGGGC CAGCGAGACCTGGACTGGGACTGGCGGAGGATTCAGGGGGC < 41bp 0.551072700813269 0.778586641375215 0.78101486 0.5862538 prediction 0.455027881123892 Functional Gain - RIBC2 ENSG00000128408 CDS Human protein_coding chr22:45826821 chr22:45826822 nonsynonymous SNV 0.135 2 22 hm5C_associated_SNPs_116280 0 0 0 0 1 RIBC2 chr22:45826780 3'AG 45826780 Downstream 43bp
chr11 74545757 74545757 1 + T C STAD 74545754 + 74545734 74545774 41 AAGGTGGAAAGGAGTCAGAGCTGTAGTGACACAGCCCAGGA AAGGTGGAAAGGAGTCAGAGCTGCAGTGACACAGCCCAGGA < 41bp 0.521926499314022 0.749439142959208 0.122449726 0.11967474 prediction 0.455025287290372 Functional Gain - RNF169 ENSG00000166439 CDS Human protein_coding chr11:74545754 chr11:74545757 synonymous SNV . 0 24 hm5C_associated_SNPs_116281 0 0 1 0 2 RNF169 chr11:74545721 3'AG 74545721 Downstream 37bp
chr11 74545757 74545757 1 + T C STAD 74545754 + 74545734 74545774 41 AAGGTGGAAAGGAGTCAGAGCTGTAGTGACACAGCCCAGGA AAGGTGGAAAGGAGTCAGAGCTGCAGTGACACAGCCCAGGA < 41bp 0.521926499314022 0.749439142959208 0.122449726 0.11967474 prediction 0.455025287290372 Functional Gain - RNF169 ENSG00000166439 CDS Human protein_coding chr11:74545754 chr11:74545757 synonymous SNV . 0 24 hm5C_associated_SNPs_116281 0 0 1 0 2 RNF169 chr11:74545820 5'GT 74545820 Upstream 64bp
chr12 6955994 6955994 1 - G T COAD 6955995 - 6955975 6956015 41 CCATCCCGTCAGCTGTGACTCCCAGGCAGCTCACCCTGTTA CCATCCCGTCAGCTGTGACTCACAGGCAGCTCACCCTGTTA < 41bp 0.571440779378398 0.798952407042288 0.06837258 0.09674075 prediction 0.45502325532778 Functional Gain - CDCA3;GNB3 ENSG00000111664;ENSG00000111665 CDS Human protein_coding chr12:6955995 chr12:6955994 stopgain 0.989 1 22 hm5C_associated_SNPs_116284 0 0 1 0 1 CDCA3 chr12:6956067 3'AG 6956067 Downstream 74bp
chr4 5500733 5500733 1 + C A rs61729661 5500732 + 5500712 5500752 41 ACCGACAGCCGAGGGGGAGGCCAGGCCCAAAGCAAGCTCCA ACCGACAGCCGAGGGGGAGGCAAGGCCCAAAGCAAGCTCCA < 41bp 0.511218507152508 0.738729793185827 0.88163596 0.83219385 prediction 0.455022572066637 Functional Gain - STK32B ENSG00000152953 CDS Human protein_coding chr4:5500732 chr4:5500733 nonsynonymous SNV 0.181 0 22 hm5C_associated_SNPs_116285 0 0 0 0 1 STK32B chr4:5500672 3'AG 5500672 Downstream 62bp
chr9 102590362 102590362 1 + C T UCEC 102590361 + 102590341 102590381 41 CCCAATATAGCCCTTCCCCTCCAGGTTCCAGTTATGCGGCG CCCAATATAGCCCTTCCCCTCTAGGTTCCAGTTATGCGGCG < 41bp 0.53541074421802 0.762915087993143 0.40253994 0.20225123 prediction 0.455008687550246 Functional Gain - NR4A3 ENSG00000119508 CDS Human protein_coding chr9:102590361 chr9:102590362 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_116286 0 0 0 0 1 NR4A3 chr9:102590323 3'AG 102590323 Downstream 40bp
chr3 50252140 50252140 1 + T C STAD 50252138 + 50252118 50252158 41 TTCAACCTCAGCAATGCCATCATGGGCAGCGGCATCCTGGG TTCAACCTCAGCAATGCCATCACGGGCAGCGGCATCCTGGG < 41bp 0.461715091876832 0.72750076285394 0.8620161 0.8537998 prediction 0.45500152570788 Functional Gain - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50252138 chr3:50252140 . 1.000 2 23 hm5C_associated_SNPs_116287 0 0 1 0 1 SLC38A3 chr3:50252200 5'GT 50252200 Upstream 61bp
chr2 1204899 1204899 1 + C T COAD 1204898 + 1204878 1204918 41 TCGCATCTCAAGGTACAAAGCCGGAACGGAAAAATTAAGGT TCGCATCTCAAGGTACAAAGCTGGAACGGAAAAATTAAGGT < 41bp 0.481182802940913 0.727499822193513 0.22742388 0.25967297 prediction 0.454999644387026 Functional Gain - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1204898 chr2:1204899 synonymous SNV . 0 22 hm5C_associated_SNPs_116289 0 0 0 0 1 SNTG2 chr2:1204916 5'GT 1204916 Upstream 18bp
chr14 24617532 24617532 1 + C T COAD 24617531 + 24617511 24617551 41 ACCAGATGGGTTGAGCTTCCCCGAAGGGCAGGAGGAGCCAG ACCAGATGGGTTGAGCTTCCCTGAAGGGCAGGAGGAGCCAG < 41bp 0.566549251951144 0.794040222684634 0.13760799 0.08500469 prediction 0.454981941466981 Functional Gain - RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617531 chr14:24617532 synonymous SNV . 0 22 hm5C_associated_SNPs_116292 0 0 1 0 2 RNF31 chr14:24617467 3'AG 24617467 Downstream 66bp
chr14 24617532 24617532 1 + C T COAD 24617531 + 24617511 24617551 41 ACCAGATGGGTTGAGCTTCCCCGAAGGGCAGGAGGAGCCAG ACCAGATGGGTTGAGCTTCCCTGAAGGGCAGGAGGAGCCAG < 41bp 0.566549251951144 0.794040222684634 0.13760799 0.08500469 prediction 0.454981941466981 Functional Gain - RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617531 chr14:24617532 synonymous SNV . 0 22 hm5C_associated_SNPs_116292 0 0 1 0 2 RNF31 chr14:24617622 5'GT 24617622 Upstream 91bp
chr17 7162177 7162177 1 + T C UCEC 7162175 + 7162155 7162195 41 CAACTCATTTGACCTTTAACCTTCACCTGTCCAAGAAAGAG CAACTCATTTGACCTTTAACCTCCACCTGTCCAAGAAAGAG < 41bp 0.444406216648805 0.727487918968408 0.020629227 0.75343585 prediction 0.454975837936815 Functional Gain - ELP5 ENSG00000170291 CDS Human protein_coding chr17:7162175 chr17:7162177 synonymous SNV . 0 23 hm5C_associated_SNPs_116293 0 0 1 1 2 ELP5 chr17:7162145 3'AG 7162145 Downstream 33bp
chr17 7162177 7162177 1 + T C UCEC 7162175 + 7162155 7162195 41 CAACTCATTTGACCTTTAACCTTCACCTGTCCAAGAAAGAG CAACTCATTTGACCTTTAACCTCCACCTGTCCAAGAAAGAG < 41bp 0.444406216648805 0.727487918968408 0.020629227 0.75343585 prediction 0.454975837936815 Functional Gain - ELP5 ENSG00000170291 CDS Human protein_coding chr17:7162175 chr17:7162177 synonymous SNV . 0 23 hm5C_associated_SNPs_116293 0 0 1 1 2 ELP5 chr17:7162245 5'GT 7162245 Upstream 69bp
chr2 86709196 86709196 1 + C A UCEC 86709195 + 86709175 86709215 41 AACAACAATTCTGGTTTCCTCCGGAATCTCTTGAATTCTTC AACAACAATTCTGGTTTCCTCAGGAATCTCTTGAATTCTTC < 41bp 0.466682291782837 0.727486580312791 0.2228213 0.7803255 prediction 0.454973160625583 Functional Gain - KDM3A ENSG00000115548 CDS Human protein_coding chr2:86709195 chr2:86709196 synonymous SNV . 0 22 hm5C_associated_SNPs_116295 0 0 1 0 1 KDM3A chr2:86709225 5'GT 86709225 Upstream 30bp
chr1 34663476 34663476 1 + C T PAAD 34663475 + 34663455 34663495 41 TTGCCAAGATCTGTTCCAAGCCCAAGGCTGACCCTGCTGTG TTGCCAAGATCTGTTCCAAGCTCAAGGCTGACCCTGCTGTG < 41bp 0.581901497921401 0.80938390853039 0.16376197 0.24210528 prediction 0.454964821217977 Functional Gain - C1orf94 ENSG00000142698 CDS Human protein_coding chr1:34663475 chr1:34663476 nonsynonymous SNV 0.551 1 22 hm5C_associated_SNPs_116299 0 0 0 0 1 C1orf94 chr1:34663514 5'GT 34663514 Upstream 39bp
chr2 105687792 105687792 1 + C T SKCM 105687791 + 105687771 105687811 41 AGAGCTATTGCTTACCTTTTCCCAAGTGGTTTGTTTGAGAA AGAGCTATTGCTTACCTTTTCTCAAGTGGTTTGTTTGAGAA < 41bp 0.583940638209115 0.811409904112442 0.11832687 0.28932866 prediction 0.454938531806654 Functional Gain - MRPS9 ENSG00000135972 CDS Human protein_coding chr2:105687791 chr2:105687792 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_116301 0 0 1 0 2 MRPS9 chr2:105687771 3'AG 105687771 Downstream 22bp
chr2 105687792 105687792 1 + C T SKCM 105687791 + 105687771 105687811 41 AGAGCTATTGCTTACCTTTTCCCAAGTGGTTTGTTTGAGAA AGAGCTATTGCTTACCTTTTCTCAAGTGGTTTGTTTGAGAA < 41bp 0.583940638209115 0.811409904112442 0.11832687 0.28932866 prediction 0.454938531806654 Functional Gain - MRPS9 ENSG00000135972 CDS Human protein_coding chr2:105687791 chr2:105687792 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_116301 0 0 1 0 2 MRPS9 chr2:105687833 5'GT 105687833 Upstream 42bp
chr3 119459488 119459488 1 + C T rs141278377 119459487 + 119459467 119459507 41 TGAAAAGCTGGTGAAAAAAGCCGAGAAGCAAGTGACCCTGG TGAAAAGCTGGTGAAAAAAGCTGAGAAGCAAGTGACCCTGG < 41bp 0.490378161133191 0.727467445792064 0.70833635 0.8753142 prediction 0.454934891584128 Functional Gain - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119459487 chr3:119459488 synonymous SNV . 0 22 hm5C_associated_SNPs_116302 0 0 0 0 2 MAATS1 chr3:119459396 3'AG 119459396 Downstream 93bp
chr3 119459488 119459488 1 + C T rs141278377 119459487 + 119459467 119459507 41 TGAAAAGCTGGTGAAAAAAGCCGAGAAGCAAGTGACCCTGG TGAAAAGCTGGTGAAAAAAGCTGAGAAGCAAGTGACCCTGG < 41bp 0.490378161133191 0.727467445792064 0.70833635 0.8753142 prediction 0.454934891584128 Functional Gain - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119459487 chr3:119459488 synonymous SNV . 0 22 hm5C_associated_SNPs_116302 0 0 0 0 2 MAATS1 chr3:119459542 5'GT 119459542 Upstream 55bp
chr3 35780985 35780985 1 + A G COAD 35780982 + 35780962 35781002 41 CAGCTTCCTACAGGAGGATTCTCAGGCTCTGGCCCTCCCAT CAGCTTCCTACAGGAGGATTCTCGGGCTCTGGCCCTCCCAT < 41bp 0.523987203206551 0.751453799137283 0.7002772 0.78349507 prediction 0.454933191861463 Functional Gain - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35780982 chr3:35780985 synonymous SNV . 0 24 hm5C_associated_SNPs_116303 0 0 0 0 1 ARPP21 chr3:35781069 5'GT 35781069 Upstream 85bp
chr3 16336431 16336431 1 + T A UCEC 16336427 + 16336407 16336447 41 CAATATGCTCCAGTCCCAGACTGCTAGAACAAGAGAGAGTG CAATATGCTCCAGTCCCAGACTGCAAGAACAAGAGAGAGTG < 41bp 0.371232507668868 0.727465605711099 0.05416119 0.11887315 prediction 0.454931211422199 Functional Gain - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16336427 chr3:16336431 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_116304 0 0 1 0 1 OXNAD1 chr3:16336504 5'GT 16336504 Upstream 74bp
chr15 41794329 41794329 1 + C T UCEC 41794328 + 41794308 41794348 41 CGCAGCGCGCCGTCACCAAGCCGCGCTACATGCAGTGGCGG CGCAGCGCGCCGTCACCAAGCTGCGCTACATGCAGTGGCGG < 41bp 0.486225034941832 0.727462287754451 0.49320227 0.29800677 prediction 0.454924575508903 Functional Gain - ITPKA ENSG00000137825 CDS Human protein_coding chr15:41794328 chr15:41794329 nonsynonymous SNV 0.915 3 22 hm5C_associated_SNPs_116305 0 0 1 0 1 ITPKA chr15:41794399 5'GT 41794399 Upstream 71bp
chr5 3600316 3600316 1 + T A rs150332848 3600312 + 3600292 3600332 41 ACCACCGCAGCCGCCGGTCGCTATTGCCCCGGGGGCACTCA ACCACCGCAGCCGCCGGTCGCTATAGCCCCGGGGGCACTCA < 41bp 0.405132103401971 0.727456364360677 0.12078044 0.8350193 prediction 0.454912728721354 Functional Gain - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3600312 chr5:3600316 synonymous SNV . 0 25 hm5C_associated_SNPs_116306 0 0 0 0 1 IRX1 chr5:3600374 5'GT 3600374 Upstream 59bp
chr3 97167454 97167454 1 + C T UCEC 97167453 + 97167433 97167473 41 TCTTCCACAAGGTCCAAAGCCCCCAGTGTCATCATCACAGG TCTTCCACAAGGTCCAAAGCCTCCAGTGTCATCATCACAGG < 41bp 0.556023546098113 0.783478703709905 0.13460746 0.9473982 prediction 0.454910315223586 Functional Gain - EPHA6 ENSG00000080224 CDS Human protein_coding chr3:97167453 chr3:97167454 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_116307 0 0 0 1 1 EPHA6 chr3:97167412 3'AG 97167412 Downstream 43bp
chr5 162898382 162898382 1 + A G SKCM 162898379 + 162898359 162898399 41 TGTTGTGTAGGGTATGATGGCTAAGCAAGAAGGCATGGAGA TGTTGTGTAGGGTATGATGGCTAGGCAAGAAGGCATGGAGA < 41bp 0.535018407862252 0.762472329886319 0.06993833 0.15824622 prediction 0.454907844048135 Functional Gain - HMMR ENSG00000072571 CDS Human protein_coding chr5:162898379 chr5:162898382 nonsynonymous SNV 0.926 3 24 hm5C_associated_SNPs_116309 0 0 1 0 1 HMMR chr5:162898469 5'GT 162898469 Upstream 88bp
chr2 120385345 120385345 1 + C T LAML 120385344 + 120385324 120385364 41 TTCCCAGACTGCAGCCCACCCCAGGACTCCAACGAGTTGGT TTCCCAGACTGCAGCCCACCCTAGGACTCCAACGAGTTGGT < 41bp 0.546939669541701 0.774391634723707 0.23361737 0.1008797 prediction 0.454903930364012 Functional Gain - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120385344 chr2:120385345 stopgain 0.005 0 22 hm5C_associated_SNPs_116311 0 0 0 0 1 CFAP221 chr2:120385362 5'GT 120385362 Upstream 18bp
chr11 66297387 66297387 1 + C A LUAD 66297386 + 66297366 66297406 41 GTCCAGCCTGAGCCCCCTGTCCACGACAGCCCGAGAGCCAC GTCCAGCCTGAGCCCCCTGTCAACGACAGCCCGAGAGCCAC < 41bp 0.464965603019141 0.727443532973322 0.2187913 0.33383018 prediction 0.454887065946644 Functional Gain - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66297386 chr11:66297387 synonymous SNV . 0 22 hm5C_associated_SNPs_116315 0 0 0 0 2 BBS1 chr11:66297290 3'AG 66297290 Downstream 98bp
chr11 66297387 66297387 1 + C A LUAD 66297386 + 66297366 66297406 41 GTCCAGCCTGAGCCCCCTGTCCACGACAGCCCGAGAGCCAC GTCCAGCCTGAGCCCCCTGTCAACGACAGCCCGAGAGCCAC < 41bp 0.464965603019141 0.727443532973322 0.2187913 0.33383018 prediction 0.454887065946644 Functional Gain - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66297386 chr11:66297387 synonymous SNV . 0 22 hm5C_associated_SNPs_116315 0 0 0 0 2 BBS1 chr11:66297423 5'GT 66297423 Upstream 37bp
chr20 2384077 2384077 1 + C T UCEC 2384076 + 2384056 2384096 41 TGGAATGAGAGCTGGTTTGCCCGGCAGGACCTAGGCCCCTC TGGAATGAGAGCTGGTTTGCCTGGCAGGACCTAGGCCCCTC < 41bp 0.512746804954427 0.740186865009932 0.6303349 0.8056871 prediction 0.454880120111011 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2384076 chr20:2384077 nonsynonymous SNV 0.894 5 22 hm5C_associated_SNPs_116318 0 0 0 0 2 TGM6 chr20:2384043 3'AG 2384043 Downstream 35bp
chr20 2384077 2384077 1 + C T UCEC 2384076 + 2384056 2384096 41 TGGAATGAGAGCTGGTTTGCCCGGCAGGACCTAGGCCCCTC TGGAATGAGAGCTGGTTTGCCTGGCAGGACCTAGGCCCCTC < 41bp 0.512746804954427 0.740186865009932 0.6303349 0.8056871 prediction 0.454880120111011 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2384076 chr20:2384077 nonsynonymous SNV 0.894 5 22 hm5C_associated_SNPs_116318 0 0 0 0 2 TGM6 chr20:2384146 5'GT 2384146 Upstream 70bp
chr8 10285736 10285736 1 + C A UCEC 10285732 + 10285712 10285752 41 ACTTTCTACTATGCGGAAGACTACCACCAGCAGTACCTGAG ACTTTCTACTATGCGGAAGACTACAACCAGCAGTACCTGAG < 41bp 0.312637065199078 0.727428400779835 0.3003832 0.8893863 prediction 0.454856801559669 Functional Gain - MSRA ENSG00000175806 CDS Human protein_coding chr8:10285732 chr8:10285736 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_116322 0 0 0 0 1 MSRA chr8:10285658 3'AG 10285658 Downstream 79bp
chr15 78556657 78556657 1 + T G rs542532667 78556654 + 78556634 78556674 41 GCCGCCTTCTCCGGCCCCCGCCATGGCCCGGGGCGGCAGTC GCCGCCTTCTCCGGCCCCCGCCAGGGCCCGGGGCGGCAGTC < 41bp 0.460964651918811 0.727425292490077 0.28900766 0.87566704 prediction 0.454850584980154 Functional Gain - DNAJA4 ENSG00000140403 CDS Human protein_coding chr15:78556654 chr15:78556657 nonsynonymous SNV 0.742 1 24 hm5C_associated_SNPs_116323 0 0 0 0 1 DNAJA4 chr15:78556735 5'GT 78556735 Upstream 79bp
chr8 91031161 91031161 1 + C T COAD 91031160 + 91031140 91031180 41 GATGGATGTTTTGAAAGCTACCGCAGAACAAATTTCTTCTC GATGGATGTTTTGAAAGCTACTGCAGAACAAATTTCTTCTC < 41bp 0.471630167044561 0.727421928528615 0.08280483 0.13687491 prediction 0.454843857057229 Functional Gain - DECR1 ENSG00000104325 CDS Human protein_coding chr8:91031160 chr8:91031161 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_116324 0 0 1 1 2 DECR1 chr8:91031137 3'AG 91031137 Downstream 25bp
chr8 91031161 91031161 1 + C T COAD 91031160 + 91031140 91031180 41 GATGGATGTTTTGAAAGCTACCGCAGAACAAATTTCTTCTC GATGGATGTTTTGAAAGCTACTGCAGAACAAATTTCTTCTC < 41bp 0.471630167044561 0.727421928528615 0.08280483 0.13687491 prediction 0.454843857057229 Functional Gain - DECR1 ENSG00000104325 CDS Human protein_coding chr8:91031160 chr8:91031161 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_116324 0 0 1 1 2 DECR1 chr8:91031194 5'GT 91031194 Upstream 34bp
chr12 31244703 31244703 1 + C T LIHC 31244702 + 31244682 31244722 41 GCATGCGGCCACTCGGCAGGCCGCGGGCATCCGGCTGCAGG GCATGCGGCCACTCGGCAGGCTGCGGGCATCCGGCTGCAGG < 41bp 0.542363273931741 0.769766946264289 0.82897234 0.84506977 prediction 0.454807344665097 Functional Gain - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244702 chr12:31244703 synonymous SNV . 0 22 hm5C_associated_SNPs_116332 0 0 1 0 1 DDX11 chr12:31244653 3'AG 31244653 Downstream 51bp
chr1 244852603 244852603 1 + C T SKCM 244852602 + 244852582 244852622 41 TTCTGGAATATTTGAAATTTCCCCAGGAAATGCTTCTGAAC TTCTGGAATATTTGAAATTTCTCCAGGAAATGCTTCTGAAC < 41bp 0.594571850951689 0.821975358879598 0.13644546 0.9280301 prediction 0.454807015855818 Functional Gain - DESI2 ENSG00000121644 CDS Human protein_coding chr1:244852602 chr1:244852603 synonymous SNV . 0 22 hm5C_associated_SNPs_116333 0 0 1 0 2 DESI2 chr1:244852551 3'AG 244852551 Downstream 53bp
chr1 244852603 244852603 1 + C T SKCM 244852602 + 244852582 244852622 41 TTCTGGAATATTTGAAATTTCCCCAGGAAATGCTTCTGAAC TTCTGGAATATTTGAAATTTCTCCAGGAAATGCTTCTGAAC < 41bp 0.594571850951689 0.821975358879598 0.13644546 0.9280301 prediction 0.454807015855818 Functional Gain - DESI2 ENSG00000121644 CDS Human protein_coding chr1:244852602 chr1:244852603 synonymous SNV . 0 22 hm5C_associated_SNPs_116333 0 0 1 0 2 DESI2 chr1:244852644 5'GT 244852644 Upstream 42bp
chr2 113831925 113831925 1 + A G UCEC 113831922 + 113831902 113831942 41 TCAGAATTAAATATGCAGACCAGAAGGCTCTATACACAAGA TCAGAATTAAATATGCAGACCAGGAGGCTCTATACACAAGA < 41bp 0.488787927913649 0.727399031342031 0.088166654 0.07786393 prediction 0.454798062684063 Functional Gain - IL1F10 ENSG00000136697 CDS Human protein_coding chr2:113831922 chr2:113831925 nonsynonymous SNV 0.953 1 24 hm5C_associated_SNPs_116334 0 0 0 0 2 IL1F10 chr2:113831906 3'AG 113831906 Downstream 20bp
chr2 113831925 113831925 1 + A G UCEC 113831922 + 113831902 113831942 41 TCAGAATTAAATATGCAGACCAGAAGGCTCTATACACAAGA TCAGAATTAAATATGCAGACCAGGAGGCTCTATACACAAGA < 41bp 0.488787927913649 0.727399031342031 0.088166654 0.07786393 prediction 0.454798062684063 Functional Gain - IL1F10 ENSG00000136697 CDS Human protein_coding chr2:113831922 chr2:113831925 nonsynonymous SNV 0.953 1 24 hm5C_associated_SNPs_116334 0 0 0 0 2 IL1F10 chr2:113831991 5'GT 113831991 Upstream 67bp
chr1 50661409 50661409 1 + C T SKCM 50661408 + 50661388 50661428 41 CTCTCCCAGCTCTACCAGTCCCCCAACCGGCGCTACCCAGG CTCTCCCAGCTCTACCAGTCCTCCAACCGGCGCTACCCAGG < 41bp 0.613896547464075 0.841293684958161 0.13437733 0.9470383 prediction 0.454794274988173 Functional Gain - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50661408 chr1:50661409 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_116335 0 0 0 0 1 ELAVL4 chr1:50661458 5'GT 50661458 Upstream 50bp
chr22 25264420 25264420 1 + C A HNSC 25264416 + 25264396 25264436 41 CCCTTCCGCTTCCCCAAGGGCGGGCACCTCCTGCAGTTCCT CCCTTCCGCTTCCCCAAGGGCGGGAACCTCCTGCAGTTCCT < 41bp 0.313155843272653 0.72739605606787 0.87030816 0.8822509 prediction 0.45479211213574 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25264416 chr22:25264420 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_116336 0 0 0 0 2 SGSM1 chr22:25264343 3'AG 25264343 Downstream 78bp
chr22 25264420 25264420 1 + C A HNSC 25264416 + 25264396 25264436 41 CCCTTCCGCTTCCCCAAGGGCGGGCACCTCCTGCAGTTCCT CCCTTCCGCTTCCCCAAGGGCGGGAACCTCCTGCAGTTCCT < 41bp 0.313155843272653 0.72739605606787 0.87030816 0.8822509 prediction 0.45479211213574 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25264416 chr22:25264420 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_116336 0 0 0 0 2 SGSM1 chr22:25264506 5'GT 25264506 Upstream 87bp
chr3 52824844 52824844 1 + C T rs200827836 52824843 + 52824823 52824863 41 ACCTTTGAGGTTGTTTTGCACCGAGTGTGGAAGGGGAGCTC ACCTTTGAGGTTGTTTTGCACTGAGTGTGGAAGGGGAGCTC < 41bp 0.554367315797884 0.781750837204028 0.17039385 0.11707464 prediction 0.454767042812289 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52824843 chr3:52824844 stopgain 0.623 1 22 hm5C_associated_SNPs_116339 0 0 1 0 1 ITIH1 chr3:52824937 5'GT 52824937 Upstream 94bp
chr20 29845557 29845557 1 + C A LUAD 29845556 + 29845536 29845576 41 GTGGTCCTGGCTCAGACTGCCCCAGGTAAACAGAACCATGG GTGGTCCTGGCTCAGACTGCCACAGGTAAACAGAACCATGG < 41bp 0.477725148689065 0.727382979315009 0.09638134 0.34899697 prediction 0.454765958630018 Functional Gain - DEFB115 ENSG00000215547 CDS Human protein_coding chr20:29845556 chr20:29845557 nonsynonymous SNV 0.018 2 22 hm5C_associated_SNPs_116340 0 0 0 0 1 DEFB115 chr20:29845560 5'GT 29845560 Upstream 4bp
chr19 4236963 4236963 1 + C A UCEC 4236962 + 4236942 4236982 41 ATTGAAGCCACGTCCTTCATCCTCAGGGCTGTGCGGCCCCG ATTGAAGCCACGTCCTTCATCATCAGGGCTGTGCGGCCCCG < 41bp 0.576357245442368 0.803734661241401 0.2780336 0.47234353 prediction 0.454754831598066 Functional Gain - EBI3 ENSG00000105246 CDS Human protein_coding chr19:4236962 chr19:4236963 nonsynonymous SNV 0.665 2 22 hm5C_associated_SNPs_116343 0 0 0 0 1 EBI3 chr19:4236933 3'AG 4236933 Downstream 31bp
chr1 11586795 11586795 1 + C T COAD 11586794 + 11586774 11586814 41 CTCCAGGCGGCGAGCCCCTCCCGCAAGTGGATGCTGACGAC CTCCAGGCGGCGAGCCCCTCCTGCAAGTGGATGCTGACGAC < 41bp 0.608574900573563 0.835947941307419 0.5853142 0.6072937 prediction 0.454746081467711 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11586794 chr1:11586795 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_116345 0 0 0 0 2 DISP3 chr1:11586708 3'AG 11586708 Downstream 88bp
chr1 11586795 11586795 1 + C T COAD 11586794 + 11586774 11586814 41 CTCCAGGCGGCGAGCCCCTCCCGCAAGTGGATGCTGACGAC CTCCAGGCGGCGAGCCCCTCCTGCAAGTGGATGCTGACGAC < 41bp 0.608574900573563 0.835947941307419 0.5853142 0.6072937 prediction 0.454746081467711 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11586794 chr1:11586795 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_116345 0 0 0 0 2 DISP3 chr1:11586892 5'GT 11586892 Upstream 98bp
chr1 38023344 38023344 1 + C T BRCA 38023343 + 38023323 38023363 41 AATCTTGAATGCCATACTACCCCCAAGGTAAGAAAGTAGGA AATCTTGAATGCCATACTACCTCCAAGGTAAGAAAGTAGGA < 41bp 0.44940589723073 0.72736661182972 0.1244331 0.9503841 prediction 0.45473322365944 Functional Gain - DNALI1 ENSG00000163879 CDS Human protein_coding chr1:38023343 chr1:38023344 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_116346 0 0 0 0 1 DNALI1 chr1:38023349 5'GT 38023349 Upstream 6bp
chr19 10166381 10166381 1 + C A LUSC 10166377 + 10166357 10166397 41 GCCAACTGGATCATCATCGACAGGCAGGCAGAGGATGGGCA GCCAACTGGATCATCATCGACAGGAAGGCAGAGGATGGGCA < 41bp 0.344877284314102 0.727363493418193 0.39516938 0.34848565 prediction 0.454726986836385 Functional Gain - C3P1 ENSG00000167798 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:10166377 chr19:10166381 . . 0 25 hm5C_associated_SNPs_116348 0 0 0 0 1 C3P1 chr19:10166437 5'GT 10166437 Upstream 57bp
chr2 135620972 135620972 1 + C A LUSC 135620971 + 135620951 135620991 41 CCTGTCTCCACCAGGCCAAACCTGAGGACACTTTAAACCTG CCTGTCTCCACCAGGCCAAACATGAGGACACTTTAAACCTG < 41bp 0.463638862241102 0.727358007580756 0.25220484 0.327254 prediction 0.454716015161513 Functional Gain - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135620971 chr2:135620972 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_116349 0 0 0 0 1 ACMSD chr2:135620965 3'AG 135620965 Downstream 8bp
chr17 73809956 73809956 1 + C T UCEC 73809955 + 73809935 73809975 41 CACCGAGCAGCAGTTCCACCCCGAGGTGGGCCCCACAGCAG CACCGAGCAGCAGTTCCACCCTGAGGTGGGCCCCACAGCAG < 41bp 0.554064611362732 0.781420675295343 0.7794707 0.33417508 prediction 0.454712127865221 Functional Gain - UNK ENSG00000132478 CDS Human protein_coding chr17:73809955 chr17:73809956 synonymous SNV . 0 22 hm5C_associated_SNPs_116350 0 0 1 0 1 UNK chr17:73809959 5'GT 73809959 Upstream 4bp
chr1 160323960 160323960 1 + T G LIHC 160323957 + 160323937 160323977 41 GAGTGGTGCTGGTGTCCCTGCTGTCATCCTCAGGAGGCCAA GAGTGGTGCTGGTGTCCCTGCTGGCATCCTCAGGAGGCCAA < 41bp 0.326790360927644 0.727353777327577 0.089092195 0.27291396 prediction 0.454707554655154 Functional Gain - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160323957 chr1:160323960 nonsynonymous SNV 0.380 4 24 hm5C_associated_SNPs_116352 0 0 1 0 1 NCSTN chr1:160323908 3'AG 160323908 Downstream 53bp
chr1 167659354 167659354 1 + T C UCEC 167659352 + 167659332 167659372 41 GCTCGCCTCTGATTGAGAAGCTTCAGGTAAGTGCAGAATTC GCTCGCCTCTGATTGAGAAGCTCCAGGTAAGTGCAGAATTC < 41bp 0.433998934113993 0.727349983430875 0.21706441 0.4765278 prediction 0.45469996686175 Functional Gain - RCSD1 ENSG00000198771 CDS Human protein_coding chr1:167659352 chr1:167659354 synonymous SNV . 0 23 hm5C_associated_SNPs_116355 0 0 0 0 2 RCSD1 chr1:167659286 3'AG 167659286 Downstream 69bp
chr1 167659354 167659354 1 + T C UCEC 167659352 + 167659332 167659372 41 GCTCGCCTCTGATTGAGAAGCTTCAGGTAAGTGCAGAATTC GCTCGCCTCTGATTGAGAAGCTCCAGGTAAGTGCAGAATTC < 41bp 0.433998934113993 0.727349983430875 0.21706441 0.4765278 prediction 0.45469996686175 Functional Gain - RCSD1 ENSG00000198771 CDS Human protein_coding chr1:167659352 chr1:167659354 synonymous SNV . 0 23 hm5C_associated_SNPs_116355 0 0 0 0 2 RCSD1 chr1:167659357 5'GT 167659357 Upstream 4bp
chr2 11284102 11284102 1 + A G UCEC 11284099 + 11284079 11284119 41 CATGTGCCTCTCTTTTCGGACACAGTTCCCAGTTCCACGAA CATGTGCCTCTCTTTTCGGACACGGTTCCCAGTTCCACGAA < 41bp 0.53077233532608 0.758117948118757 0.19156727 0.35997045 prediction 0.454691225585354 Functional Gain - C2orf50 ENSG00000150873 CDS Human protein_coding chr2:11284099 chr2:11284102 synonymous SNV . 0 24 hm5C_associated_SNPs_116358 0 0 0 0 1 C2orf50 chr2:11284046 3'AG 11284046 Downstream 57bp
chr2 1457561 1457561 1 + C T SKCM 1457560 + 1457540 1457580 41 GTCAGCCCCGAGGCTGGAACCCCGGCTTCTTGTACAACGGG GTCAGCCCCGAGGCTGGAACCTCGGCTTCTTGTACAACGGG < 41bp 0.479681985737684 0.727344104945959 0.23248208 0.24876115 prediction 0.454688209891918 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1457560 chr2:1457561 nonsynonymous SNV 0.224 2 22 hm5C_associated_SNPs_116359 0 0 0 0 2 TPO chr2:1457466 3'AG 1457466 Downstream 96bp
chr2 1457561 1457561 1 + C T SKCM 1457560 + 1457540 1457580 41 GTCAGCCCCGAGGCTGGAACCCCGGCTTCTTGTACAACGGG GTCAGCCCCGAGGCTGGAACCTCGGCTTCTTGTACAACGGG < 41bp 0.479681985737684 0.727344104945959 0.23248208 0.24876115 prediction 0.454688209891918 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1457560 chr2:1457561 nonsynonymous SNV 0.224 2 22 hm5C_associated_SNPs_116359 0 0 0 0 2 TPO chr2:1457595 5'GT 1457595 Upstream 35bp
chr21 47971611 47971611 1 + C T SKCM 47971610 + 47971590 47971630 41 GAAGAGAATCGCTCAGGCTTCCGGGAGAGAGCTCGCCCACC GAAGAGAATCGCTCAGGCTTCTGGGAGAGAGCTCGCCCACC < 41bp 0.525765827419355 0.75310472597259 0.90774244 0.76948786 prediction 0.45467779710647 Functional Gain - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47971610 chr21:47971611 synonymous SNV . 0 22 hm5C_associated_SNPs_116361 0 0 1 0 2 DIP2A chr21:47971547 3'AG 47971547 Downstream 65bp
chr21 47971611 47971611 1 + C T SKCM 47971610 + 47971590 47971630 41 GAAGAGAATCGCTCAGGCTTCCGGGAGAGAGCTCGCCCACC GAAGAGAATCGCTCAGGCTTCTGGGAGAGAGCTCGCCCACC < 41bp 0.525765827419355 0.75310472597259 0.90774244 0.76948786 prediction 0.45467779710647 Functional Gain - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47971610 chr21:47971611 synonymous SNV . 0 22 hm5C_associated_SNPs_116361 0 0 1 0 2 DIP2A chr21:47971656 5'GT 47971656 Upstream 46bp
chr2 111850516 111850516 1 + C A LUAD 111850512 + 111850492 111850532 41 TTTAGAACATAAATACTTGACTCCCATGGCCAGCACGAGGA TTTAGAACATAAATACTTGACTCCAATGGCCAGCACGAGGA < 41bp 0.289735686471885 0.727336537573029 0.042838544 0.95366395 prediction 0.454673075146058 Functional Gain - ACOXL ENSG00000153093 CDS Human protein_coding chr2:111850512 chr2:111850516 synonymous SNV . 0 25 hm5C_associated_SNPs_116363 0 0 0 0 2 ACOXL chr2:111850442 3'AG 111850442 Downstream 75bp
chr2 111850516 111850516 1 + C A LUAD 111850512 + 111850492 111850532 41 TTTAGAACATAAATACTTGACTCCCATGGCCAGCACGAGGA TTTAGAACATAAATACTTGACTCCAATGGCCAGCACGAGGA < 41bp 0.289735686471885 0.727336537573029 0.042838544 0.95366395 prediction 0.454673075146058 Functional Gain - ACOXL ENSG00000153093 CDS Human protein_coding chr2:111850512 chr2:111850516 synonymous SNV . 0 25 hm5C_associated_SNPs_116363 0 0 0 0 2 ACOXL chr2:111850543 5'GT 111850543 Upstream 28bp
chr10 86007367 86007367 1 + A G UCEC 86007364 + 86007344 86007384 41 CAGCTCTCTCCGGTCTCAGCCTCAATACCCTGACCATCTTC CAGCTCTCTCCGGTCTCAGCCTCGATACCCTGACCATCTTC < 41bp 0.541021491151895 0.768353960215139 0.568984 0.9280908 prediction 0.454664938126489 Functional Gain - RGR ENSG00000148604 CDS Human protein_coding chr10:86007364 chr10:86007367 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_116367 0 0 0 0 1 RGR chr10:86007347 3'AG 86007347 Downstream 21bp
chr7 6630046 6630046 1 + C G rs146606811 6630045 + 6630025 6630065 41 GCCCATCGTGGACAAGGGCCCCGTGGAGCTGCTGGAGGAGT GCCCATCGTGGACAAGGGCCCGGTGGAGCTGCTGGAGGAGT < 41bp 0.41061489348638 0.727329012299436 0.1132884 0.42650393 prediction 0.454658024598872 Functional Gain - C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6630045 chr7:6630046 synonymous SNV . 0 22 hm5C_associated_SNPs_116369 0 0 1 0 1 C7orf26 chr7:6630106 5'GT 6630106 Upstream 61bp
chr7 2409304 2409304 1 + C T SKCM 2409303 + 2409283 2409323 41 GTGTGAAAGTAGATAGGACTCCGAAAGGCACCCAGGTATGT GTGTGAAAGTAGATAGGACTCTGAAAGGCACCCAGGTATGT < 41bp 0.471185473672511 0.727327642135613 0.20110938 0.15030852 prediction 0.454655284271226 Functional Gain - EIF3B ENSG00000106263 CDS Human protein_coding chr7:2409303 chr7:2409304 nonsynonymous SNV 0.782 2 22 hm5C_associated_SNPs_116370 0 0 1 0 1 EIF3B chr7:2409317 5'GT 2409317 Upstream 14bp
chr11 64071270 64071270 1 + T C rs202192649 64071268 + 64071248 64071288 41 CCACTGCCCCTGATGGAACTCATGGAGAATGAAGCTCTGGA CCACTGCCCCTGATGGAACTCACGGAGAATGAAGCTCTGGA < 41bp 0.461637545178199 0.727324979354882 0.07405168 0.06621963 prediction 0.454649958709764 Functional Gain - CATSPERZ ENSG00000219435 CDS Human protein_coding chr11:64071268 chr11:64071270 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_116372 0 0 0 0 2 CATSPERZ chr11:64071245 3'AG 64071245 Downstream 26bp
chr11 64071270 64071270 1 + T C rs202192649 64071268 + 64071248 64071288 41 CCACTGCCCCTGATGGAACTCATGGAGAATGAAGCTCTGGA CCACTGCCCCTGATGGAACTCACGGAGAATGAAGCTCTGGA < 41bp 0.461637545178199 0.727324979354882 0.07405168 0.06621963 prediction 0.454649958709764 Functional Gain - CATSPERZ ENSG00000219435 CDS Human protein_coding chr11:64071268 chr11:64071270 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_116372 0 0 0 0 2 CATSPERZ chr11:64071311 5'GT 64071311 Upstream 42bp
chr19 16613940 16613940 1 + A G UCEC 16613937 + 16613917 16613957 41 ACTCTCCAGCGCAAAGCCTTCTCAGACATCACACCTGCCAA ACTCTCCAGCGCAAAGCCTTCTCGGACATCACACCTGCCAA < 41bp 0.542754047391686 0.770076639227395 0.02976939 0.06006208 prediction 0.454645183671419 Functional Gain - C19orf44 ENSG00000105072 CDS Human protein_coding chr19:16613937 chr19:16613940 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_116373 0 0 0 3 1 C19orf44 chr19:16613876 3'AG 16613876 Downstream 65bp
chr3 147131182 147131182 1 + C A LUSC 147131178 + 147131158 147131198 41 GCAGGGCTCGCAGCCTTCGCCGGCCGCCAGCTCTGGCTACG GCAGGGCTCGCAGCCTTCGCCGGCAGCCAGCTCTGGCTACG < 41bp 0.702467929627681 0.929790152636924 0.70034516 0.86131144 prediction 0.454644446018487 Functional Gain - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147131178 chr3:147131182 synonymous SNV . 0 25 hm5C_associated_SNPs_116374 0 0 1 0 1 ZIC1 chr3:147131141 3'AG 147131141 Downstream 42bp
chr1 203740550 203740550 1 + C A rs78993747 203740549 + 203740529 203740569 41 CTTGCTGACTTTGCCACAAACCAGACAAAGAGCCAAAAATA CTTGCTGACTTTGCCACAAACAAGACAAAGAGCCAAAAATA < 41bp 0.581883113573099 0.809199307787583 0.024490565 0.13387203 prediction 0.454632388428968 Functional Gain - LAX1 ENSG00000122188 CDS Human protein_coding chr1:203740549 chr1:203740550 synonymous SNV . 0 22 hm5C_associated_SNPs_116377 0 0 0 0 2 LAX1 chr1:203740495 3'AG 203740495 Downstream 56bp
chr1 203740550 203740550 1 + C A rs78993747 203740549 + 203740529 203740569 41 CTTGCTGACTTTGCCACAAACCAGACAAAGAGCCAAAAATA CTTGCTGACTTTGCCACAAACAAGACAAAGAGCCAAAAATA < 41bp 0.581883113573099 0.809199307787583 0.024490565 0.13387203 prediction 0.454632388428968 Functional Gain - LAX1 ENSG00000122188 CDS Human protein_coding chr1:203740549 chr1:203740550 synonymous SNV . 0 22 hm5C_associated_SNPs_116377 0 0 0 0 2 LAX1 chr1:203740605 5'GT 203740605 Upstream 56bp
chr17 18001661 18001661 1 + T G UCEC 18001659 + 18001639 18001679 41 TCACCACTCTGACGTGTATTCCTGGGGTCATTGAAGTAAGT TCACCACTCTGACGTGTATTCCGGGGGTCATTGAAGTAAGT < 41bp 0.362421128687563 0.727305380123398 0.4149091 0.9082334 prediction 0.454610760246797 Functional Gain - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18001659 chr17:18001661 synonymous SNV . 0 23 hm5C_associated_SNPs_116379 0 0 1 0 2 DRG2 chr17:18001584 3'AG 18001584 Downstream 78bp
chr17 18001661 18001661 1 + T G UCEC 18001659 + 18001639 18001679 41 TCACCACTCTGACGTGTATTCCTGGGGTCATTGAAGTAAGT TCACCACTCTGACGTGTATTCCGGGGGTCATTGAAGTAAGT < 41bp 0.362421128687563 0.727305380123398 0.4149091 0.9082334 prediction 0.454610760246797 Functional Gain - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18001659 chr17:18001661 synonymous SNV . 0 23 hm5C_associated_SNPs_116379 0 0 1 0 2 DRG2 chr17:18001673 5'GT 18001673 Upstream 13bp
chr3 41266982 41266982 1 + T C UCEC 41266980 + 41266960 41267000 41 GCTCGTTGTACCGCTGGGACCTTGCATAACCTTTCCCATCA GCTCGTTGTACCGCTGGGACCTCGCATAACCTTTCCCATCA < 41bp 0.440890357371513 0.727301489812699 0.19258928 0.18826678 prediction 0.454602979625399 Functional Gain - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41266980 chr3:41266982 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_116380 0 0 1 0 1 CTNNB1 chr3:41267063 5'GT 41267063 Upstream 82bp
chr19 35557191 35557191 1 + A G UCEC 35557188 + 35557168 35557208 41 AGCGGCATGGTGACCCAGCTCTGACCGGTGGCTTCTCGCTG AGCGGCATGGTGACCCAGCTCTGGCCGGTGGCTTCTCGCTG < 41bp 0.556429749511011 0.783728842468586 0.04234627 0.12648427 prediction 0.454598185915151 Functional Gain - HPN ENSG00000105707 CDS Human protein_coding chr19:35557188 chr19:35557191 stoploss 0.635 0 24 hm5C_associated_SNPs_116381 0 0 1 0 1 HPN chr19:35557153 3'AG 35557153 Downstream 39bp
chr19 34884917 34884917 1 + C A UCEC 34884913 + 34884893 34884933 41 CAACTGCTTTGGGTGTGAGACACACGCCATGCTGCCCTATG CAACTGCTTTGGGTGTGAGACACAAGCCATGCTGCCCTATG < 41bp 0.308165882114386 0.727294082962113 0.070267916 0.16825429 prediction 0.454588165924227 Functional Gain - GPI ENSG00000105220 CDS Human protein_coding chr19:34884913 chr19:34884917 nonsynonymous SNV 0.126 1 25 hm5C_associated_SNPs_116383 0 0 1 0 2 GPI chr19:34884819 3'AG 34884819 Downstream 99bp
chr19 34884917 34884917 1 + C A UCEC 34884913 + 34884893 34884933 41 CAACTGCTTTGGGTGTGAGACACACGCCATGCTGCCCTATG CAACTGCTTTGGGTGTGAGACACAAGCCATGCTGCCCTATG < 41bp 0.308165882114386 0.727294082962113 0.070267916 0.16825429 prediction 0.454588165924227 Functional Gain - GPI ENSG00000105220 CDS Human protein_coding chr19:34884913 chr19:34884917 nonsynonymous SNV 0.126 1 25 hm5C_associated_SNPs_116383 0 0 1 0 2 GPI chr19:34884971 5'GT 34884971 Upstream 55bp
chr11 124951794 124951794 1 + C T STAD 124951793 + 124951773 124951813 41 ATCAGCTTCTTTGGGGCGCTCCGGATCCCAGTAAGAAGTTT ATCAGCTTCTTTGGGGCGCTCTGGATCCCAGTAAGAAGTTT < 41bp 0.555029709181148 0.782311592796538 0.5101076 0.3471582 prediction 0.454563767230779 Functional Gain - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124951793 chr11:124951794 nonsynonymous SNV 0.964 1 22 hm5C_associated_SNPs_116386 0 0 0 0 1 SLC37A2 chr11:124951802 5'GT 124951802 Upstream 9bp
chr17 76133812 76133812 1 + C T KIRP 76133811 + 76133791 76133831 41 ACCCCAGTGCTGGGAGAACTCCGTGGGGGAGGAGCTGTACA ACCCCAGTGCTGGGAGAACTCTGTGGGGGAGGAGCTGTACA < 41bp 0.547391849919883 0.774668527333151 0.91237164 0.7415916 prediction 0.454553354826535 Functional Gain - TMC8 ENSG00000167895 CDS Human protein_coding chr17:76133811 chr17:76133812 synonymous SNV . 0 22 hm5C_associated_SNPs_116387 0 0 0 0 2 TMC8 chr17:76133798 3'AG 76133798 Downstream 15bp
chr17 76133812 76133812 1 + C T KIRP 76133811 + 76133791 76133831 41 ACCCCAGTGCTGGGAGAACTCCGTGGGGGAGGAGCTGTACA ACCCCAGTGCTGGGAGAACTCTGTGGGGGAGGAGCTGTACA < 41bp 0.547391849919883 0.774668527333151 0.91237164 0.7415916 prediction 0.454553354826535 Functional Gain - TMC8 ENSG00000167895 CDS Human protein_coding chr17:76133811 chr17:76133812 synonymous SNV . 0 22 hm5C_associated_SNPs_116387 0 0 0 0 2 TMC8 chr17:76133895 5'GT 76133895 Upstream 84bp
chr19 3731993 3731993 1 + C A SARC 3731989 + 3731969 3732009 41 AGCACATTACAGATTCGGGCCTGGCTGCCCGGCACCGTGGG AGCACATTACAGATTCGGGCCTGGATGCCCGGCACCGTGGG < 41bp 0.304632163795953 0.727276658978745 0.05777967 0.0931724 prediction 0.45455331795749 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3731989 chr19:3731993 nonsynonymous SNV 0.135 4 25 hm5C_associated_SNPs_116388 0 0 0 0 1 TJP3 chr19:3732036 5'GT 3732036 Upstream 44bp
chr10 118364912 118364912 1 + C T LAML 118364911 + 118364891 118364931 41 TTTCAAGGGGGATTCTCAAACCAGGCTCAACCCATTCCTAT TTTCAAGGGGGATTCTCAAACTAGGCTCAACCCATTCCTAT < 41bp 0.530183272993288 0.757458004879397 0.658099 0.4764377 prediction 0.454549463772219 Functional Gain - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118364911 chr10:118364912 nonsynonymous SNV 0.881 3 22 hm5C_associated_SNPs_116389 0 0 0 0 1 PNLIPRP1 chr10:118364898 3'AG 118364898 Downstream 15bp
chr6 88125473 88125473 1 + A G rs35978098 88125470 + 88125450 88125490 41 CTCTGTTACCCGAGAAATTACAGATAACAGAGCATGTGCTA CTCTGTTACCCGAGAAATTACAGGTAACAGAGCATGTGCTA < 41bp 0.524716818822803 0.751991153149306 0.5157394 0.77927685 prediction 0.454548668653006 Functional Gain - CFAP206 ENSG00000213204;ENSG00000272514 CDS Human other chr6:88125470 chr6:88125473 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_116390 0 0 0 0 1 CFAP206 chr6:88125404 3'AG 88125404 Downstream 70bp
chr16 29001267 29001267 1 + C A LIHC 29001266 + 29001246 29001286 41 CCTTACAGCCGCCCTGAGTTCCCAGGAGGCAGAGGAAGTGG CCTTACAGCCGCCCTGAGTTCACAGGAGGCAGAGGAAGTGG < 41bp 0.584593444926325 0.811866976880509 0.17409265 0.4010412 prediction 0.454547063908368 Functional Gain - LAT ENSG00000213658 CDS Human protein_coding chr16:29001266 chr16:29001267 synonymous SNV . 0 22 hm5C_associated_SNPs_116391 0 0 0 0 1 LAT chr16:29001254 3'AG 29001254 Downstream 14bp
chr16 77225452 77225452 1 + C T SKCM 77225451 + 77225431 77225471 41 GACTTGGAGGACACGCAGTTCCCCAGTGAGGAAGCTAGAGA GACTTGGAGGACACGCAGTTCTCCAGTGAGGAAGCTAGAGA < 41bp 0.570288398874666 0.797560549048085 0.2506142 0.9336639 prediction 0.454544300346838 Functional Gain - MON1B ENSG00000103111 CDS Human protein_coding chr16:77225451 chr16:77225452 nonsynonymous SNV 0.832 0 22 hm5C_associated_SNPs_116392 0 0 1 0 2 MON1B chr16:77225373 3'AG 77225373 Downstream 80bp
chr16 77225452 77225452 1 + C T SKCM 77225451 + 77225431 77225471 41 GACTTGGAGGACACGCAGTTCCCCAGTGAGGAAGCTAGAGA GACTTGGAGGACACGCAGTTCTCCAGTGAGGAAGCTAGAGA < 41bp 0.570288398874666 0.797560549048085 0.2506142 0.9336639 prediction 0.454544300346838 Functional Gain - MON1B ENSG00000103111 CDS Human protein_coding chr16:77225451 chr16:77225452 nonsynonymous SNV 0.832 0 22 hm5C_associated_SNPs_116392 0 0 1 0 2 MON1B chr16:77225530 5'GT 77225530 Upstream 79bp
chr1 231344959 231344959 1 + C T UCEC 231344958 + 231344938 231344978 41 GCCATGTATGTGGACAACAACCGCAGCTGGTTCATGCACTG GCCATGTATGTGGACAACAACTGCAGCTGGTTCATGCACTG < 41bp 0.47333615937644 0.72726938901288 0.32733542 0.8382877 prediction 0.45453877802576 Functional Gain - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231344958 chr1:231344959 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_116394 0 0 0 0 1 TRIM67 chr1:231344996 5'GT 231344996 Upstream 38bp
chr6 163149356 163149356 1 + C A THCA 163149352 + 163149332 163149372 41 AGCTGCTGGCACAACAGCCGCTCCCGGTGCACCAGCCTCAC AGCTGCTGGCACAACAGCCGCTCCAGGTGCACCAGCCTCAC < 41bp 0.328881460484693 0.72726824760157 0.17581725 0.8986825 prediction 0.454536495203141 Functional Gain - PACRG ENSG00000112530 CDS Human protein_coding chr6:163149352 chr6:163149356 nonsynonymous SNV 0.973 0 25 hm5C_associated_SNPs_116395 0 0 0 0 1 PACRG chr6:163149423 5'GT 163149423 Upstream 68bp
chr7 138862969 138862969 1 + C T LUSC 138862968 + 138862948 138862988 41 CCTCCGTTTCAGATACAATACCAGGGAGGCAGTGCATGGCT CCTCCGTTTCAGATACAATACTAGGGAGGCAGTGCATGGCT < 41bp 0.544085066179836 0.771351565801321 0.6031558 0.44720352 prediction 0.45453299924297 Functional Gain - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138862968 chr7:138862969 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_116396 0 0 0 0 2 TTC26 chr7:138862960 3'AG 138862960 Downstream 10bp
chr7 138862969 138862969 1 + C T LUSC 138862968 + 138862948 138862988 41 CCTCCGTTTCAGATACAATACCAGGGAGGCAGTGCATGGCT CCTCCGTTTCAGATACAATACTAGGGAGGCAGTGCATGGCT < 41bp 0.544085066179836 0.771351565801321 0.6031558 0.44720352 prediction 0.45453299924297 Functional Gain - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138862968 chr7:138862969 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_116396 0 0 0 0 2 TTC26 chr7:138863048 5'GT 138863048 Upstream 80bp
chr9 131733151 131733151 1 + C A OV 131733150 + 131733130 131733170 41 GAAGAGACAAGCAGTGTGGTCCGGAAGATAGGTGGCACAGC GAAGAGACAAGCAGTGTGGTCAGGAAGATAGGTGGCACAGC < 41bp 0.585599083419391 0.812864906047994 0.609189 0.8834025 prediction 0.454531645257207 Functional Gain - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131733150 chr9:131733151 synonymous SNV . 0 22 hm5C_associated_SNPs_116397 0 0 1 0 1 NUP188 chr9:131733237 5'GT 131733237 Upstream 87bp
chr1 203740522 203740522 1 + T C LUAD 203740520 + 203740500 203740540 41 GTTCCTTACCTCCGAGTTACCGTCATGCCCTTGCTGACTTT GTTCCTTACCTCCGAGTTACCGCCATGCCCTTGCTGACTTT < 41bp 0.625995199482046 0.853261014678692 0.020881593 0.21483988 prediction 0.45453163039329 Functional Gain - LAX1 ENSG00000122188 CDS Human protein_coding chr1:203740520 chr1:203740522 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_116398 0 0 0 0 2 LAX1 chr1:203740495 3'AG 203740495 Downstream 28bp
chr1 203740522 203740522 1 + T C LUAD 203740520 + 203740500 203740540 41 GTTCCTTACCTCCGAGTTACCGTCATGCCCTTGCTGACTTT GTTCCTTACCTCCGAGTTACCGCCATGCCCTTGCTGACTTT < 41bp 0.625995199482046 0.853261014678692 0.020881593 0.21483988 prediction 0.45453163039329 Functional Gain - LAX1 ENSG00000122188 CDS Human protein_coding chr1:203740520 chr1:203740522 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_116398 0 0 0 0 2 LAX1 chr1:203740605 5'GT 203740605 Upstream 84bp
chr1 156617836 156617836 1 + C T HNSC 156617835 + 156617815 156617855 41 ATGGATGGCTTCCCCGGGGTCCGGAACTATGGTGTGGTGGA ATGGATGGCTTCCCCGGGGTCTGGAACTATGGTGTGGTGGA < 41bp 0.55265870172995 0.779918970174288 0.697478 0.58802086 prediction 0.454520536888677 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156617835 chr1:156617836 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_116400 0 0 0 0 2 BCAN chr1:156617775 3'AG 156617775 Downstream 62bp
chr1 156617836 156617836 1 + C T HNSC 156617835 + 156617815 156617855 41 ATGGATGGCTTCCCCGGGGTCCGGAACTATGGTGTGGTGGA ATGGATGGCTTCCCCGGGGTCTGGAACTATGGTGTGGTGGA < 41bp 0.55265870172995 0.779918970174288 0.697478 0.58802086 prediction 0.454520536888677 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156617835 chr1:156617836 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_116400 0 0 0 0 2 BCAN chr1:156617902 5'GT 156617902 Upstream 67bp
chr4 1800986 1800986 1 + C A LGG 1800985 + 1800965 1801005 41 CCCATCTTCCCCACAGAAGTCCCGGGCCCAGAGCCCGGCCA CCCATCTTCCCCACAGAAGTCACGGGCCCAGAGCCCGGCCA < 41bp 0.578286495473283 0.805545007019646 0.83408844 0.8566741 prediction 0.454517023092726 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1800985 chr4:1800986 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_116402 0 0 1 0 1 FGFR3 chr4:1800981 3'AG 1800981 Downstream 6bp
chr9 95766406 95766406 1 + A G UCEC 95766403 + 95766383 95766423 41 TGCTGCCGGAGCTGAAGACGCGGATCACGGAGGAGTGGTGA TGCTGCCGGAGCTGAAGACGCGGGTCACGGAGGAGTGGTGA < 41bp 0.559560486505593 0.786811888342648 0.8482036 0.8858072 prediction 0.454502803674109 Functional Gain - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95766403 chr9:95766406 nonsynonymous SNV 0.943 2 24 hm5C_associated_SNPs_116404 0 0 0 0 1 FGD3 chr9:95766419 5'GT 95766419 Upstream 14bp
chr8 125052164 125052164 1 + C A LUAD 125052163 + 125052143 125052183 41 AGGGCTCACATGTACCAAGCCCGGGGCCTCATCGCAGCTGA AGGGCTCACATGTACCAAGCCAGGGGCCTCATCGCAGCTGA < 41bp 0.470459795127011 0.727241102422687 0.54400647 0.87832904 prediction 0.454482204845375 Functional Gain - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:125052163 chr8:125052164 synonymous SNV . 0 22 hm5C_associated_SNPs_116406 0 0 0 0 2 FER1L6 chr8:125052123 3'AG 125052123 Downstream 42bp
chr8 125052164 125052164 1 + C A LUAD 125052163 + 125052143 125052183 41 AGGGCTCACATGTACCAAGCCCGGGGCCTCATCGCAGCTGA AGGGCTCACATGTACCAAGCCAGGGGCCTCATCGCAGCTGA < 41bp 0.470459795127011 0.727241102422687 0.54400647 0.87832904 prediction 0.454482204845375 Functional Gain - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:125052163 chr8:125052164 synonymous SNV . 0 22 hm5C_associated_SNPs_116406 0 0 0 0 2 FER1L6 chr8:125052247 5'GT 125052247 Upstream 84bp
chr20 47853046 47853046 1 + A G rs144893277 47853043 + 47853023 47853063 41 GTGAAGGCCAGGATACTTCCCCAAGGTGAGCAGGCACCCCT GTGAAGGCCAGGATACTTCCCCAGGGTGAGCAGGCACCCCT < 41bp 0.552291385805936 0.779532158840691 0.8744915 0.9107816 prediction 0.45448154606951 Functional Gain - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47853043 chr20:47853046 synonymous SNV . 0 24 hm5C_associated_SNPs_116407 0 0 1 0 1 DDX27 chr20:47853047 5'GT 47853047 Upstream 2bp
chr6 4937824 4937824 1 + T C SKCM 4937821 + 4937801 4937841 41 AATGAGAGAAGTCCAGAGTGCTCTGAGCACGGCCGCTGCCG AATGAGAGAAGTCCAGAGTGCTCCGAGCACGGCCGCTGCCG < 41bp 0.503123203644469 0.730357216956121 0.300228 0.29120326 prediction 0.454468026623305 Functional Gain - CDYL ENSG00000153046 CDS Human protein_coding chr6:4937821 chr6:4937824 nonsynonymous SNV 0.938 4 24 hm5C_associated_SNPs_116411 0 0 1 0 1 CDYL chr6:4937799 3'AG 4937799 Downstream 26bp
chr16 56704830 56704830 1 + C G rs115168050 56704829 + 56704809 56704849 41 GGCTGCTGCTCCTGTTGCCCCCTGGGCTGTGCCAAGTGTGC GGCTGCTGCTCCTGTTGCCCCGTGGGCTGTGCCAAGTGTGC < 41bp 0.407105888296843 0.727233580792612 0.06762195 0.3430996 prediction 0.454467161585224 Functional Gain - MT1H ENSG00000205358 CDS Human protein_coding chr16:56704829 chr16:56704830 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_116412 0 0 0 0 1 MT1H chr16:56704810 3'AG 56704810 Downstream 21bp
chr7 140404670 140404670 1 + C T rs557664551 140404669 + 140404649 140404689 41 GTTGTCACCAGGGTCACTTTCCGTATCCTGATCCTTCCCAG GTTGTCACCAGGGTCACTTTCTGTATCCTGATCCTTCCCAG < 41bp 0.486851963535194 0.727228953656707 0.20535678 0.25947928 prediction 0.454457907313414 Functional Gain - NDUFB2 ENSG00000090266 CDS Human protein_coding chr7:140404669 chr7:140404670 nonsynonymous SNV 0.894 1 22 hm5C_associated_SNPs_116415 0 0 1 0 1 NDUFB2 chr7:140404763 5'GT 140404763 Upstream 94bp
chr11 13399889 13399889 1 + C A ESCA 13399888 + 13399868 13399908 41 GATTCCTTTGTTGTAGGTGGCCCAAAGAGGACCCACCCCAC GATTCCTTTGTTGTAGGTGGCACAAAGAGGACCCACCCCAC < 41bp 0.483284299807165 0.727222212268142 0.16739866 0.14005104 prediction 0.454444424536284 Functional Gain - ARNTL ENSG00000133794 CDS Human protein_coding chr11:13399888 chr11:13399889 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_116416 0 0 0 0 1 ARNTL chr11:13399884 3'AG 13399884 Downstream 6bp
chr12 132633437 132633437 1 + C A LUSC 132633433 + 132633413 132633453 41 GACTTCCTCACCCGCGCCTGCGACCTCGGTGAGTGCCGCCG GACTTCCTCACCCGCGCCTGCGACATCGGTGAGTGCCGCCG < 41bp 0.321231526830364 0.727221773232549 0.15631467 0.28638667 prediction 0.454443546465099 Functional Gain - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132633433 chr12:132633437 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_116417 0 0 0 0 1 NOC4L chr12:132633440 5'GT 132633440 Upstream 4bp
chr17 39994312 39994312 1 + T C UCEC 39994310 + 39994290 39994330 41 GGCAAGCTCTGCGACGTGGTCATCAAGGTCAATGGCTTTGA GGCAAGCTCTGCGACGTGGTCACCAAGGTCAATGGCTTTGA < 41bp 0.610995584524446 0.838192953409109 0.14793172 0.20659313 prediction 0.454394737769326 Functional Gain - KLHL10 ENSG00000161594 CDS Human protein_coding chr17:39994310 chr17:39994312 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_116422 0 0 0 0 2 KLHL10 chr17:39994316 5'GT 39994316 Upstream 5bp
chr17 39994312 39994312 1 + T C UCEC 39994310 + 39994290 39994330 41 GGCAAGCTCTGCGACGTGGTCATCAAGGTCAATGGCTTTGA GGCAAGCTCTGCGACGTGGTCACCAAGGTCAATGGCTTTGA < 41bp 0.610995584524446 0.838192953409109 0.14793172 0.20659313 prediction 0.454394737769326 Functional Gain - KLHL10 ENSG00000161594 CDS Human protein_coding chr17:39994310 chr17:39994312 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_116422 0 0 0 0 2 KLHL10 chr17:39994378 5'GT 39994378 Upstream 67bp
chr14 105958575 105958575 1 + C G BRCA 105958574 + 105958554 105958594 41 GCTCTGTCCTGGCTCTTGGCCCGAGGACCTGTGCCCGAGCA GCTCTGTCCTGGCTCTTGGCCGGAGGACCTGTGCCCGAGCA < 41bp 0.646739089554258 0.873921638544404 0.7514291 0.9091364 prediction 0.454365097980292 Functional Gain - C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105958574 chr14:105958575 nonsynonymous SNV 0.961 1 22 hm5C_associated_SNPs_116427 0 0 1 0 1 C14orf80 chr14:105958646 5'GT 105958646 Upstream 72bp
chr9 99697710 99697710 1 + C T COAD 99697709 + 99697689 99697729 41 CAGCACACGAGCAACTTTGACCGGATGATTTTCTACGAGAT CAGCACACGAGCAACTTTGACTGGATGATTTTCTACGAGAT < 41bp 0.570775895866942 0.797951853561183 0.68978196 0.49650097 prediction 0.454351915388483 Functional Gain - NUTM2G ENSG00000188152 CDS Human protein_coding chr9:99697709 chr9:99697710 nonsynonymous SNV 0.105 1 22 hm5C_associated_SNPs_116432 0 0 0 0 1 NUTM2G chr9:99697738 5'GT 99697738 Upstream 29bp
chr1 1219446 1219446 1 + C A COAD 1219445 + 1219425 1219465 41 GGACGGGAGAATGGAAGCAGCCACACGGGGGGGCTCTCACC GGACGGGAGAATGGAAGCAGCAACACGGGGGGGCTCTCACC < 41bp 0.558074230972596 0.785245529920583 0.85365963 0.5110451 prediction 0.454342597895975 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1219445 chr1:1219446 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_116434 0 0 0 0 2 SCNN1D chr1:1219358 3'AG 1219358 Downstream 89bp
chr1 1219446 1219446 1 + C A COAD 1219445 + 1219425 1219465 41 GGACGGGAGAATGGAAGCAGCCACACGGGGGGGCTCTCACC GGACGGGAGAATGGAAGCAGCAACACGGGGGGGCTCTCACC < 41bp 0.558074230972596 0.785245529920583 0.85365963 0.5110451 prediction 0.454342597895975 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1219445 chr1:1219446 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_116434 0 0 0 0 2 SCNN1D chr1:1219470 5'GT 1219470 Upstream 25bp
chr1 193117044 193117044 1 + A G BLCA 193117041 + 193117021 193117061 41 ATTCTTCAATCTGTAAAAGCCAGAGAAGAAGGGCGTGCACC ATTCTTCAATCTGTAAAAGCCAGGGAAGAAGGGCGTGCACC < 41bp 0.504637871602387 0.731794127232254 0.67403233 0.7924236 prediction 0.454312511259734 Functional Gain - CDC73 ENSG00000134371 CDS Human protein_coding chr1:193117041 chr1:193117044 synonymous SNV . 0 24 hm5C_associated_SNPs_116438 0 0 1 0 2 CDC73 chr1:193116997 3'AG 193116997 Downstream 48bp
chr1 193117044 193117044 1 + A G BLCA 193117041 + 193117021 193117061 41 ATTCTTCAATCTGTAAAAGCCAGAGAAGAAGGGCGTGCACC ATTCTTCAATCTGTAAAAGCCAGGGAAGAAGGGCGTGCACC < 41bp 0.504637871602387 0.731794127232254 0.67403233 0.7924236 prediction 0.454312511259734 Functional Gain - CDC73 ENSG00000134371 CDS Human protein_coding chr1:193117041 chr1:193117044 synonymous SNV . 0 24 hm5C_associated_SNPs_116438 0 0 1 0 2 CDC73 chr1:193117095 5'GT 193117095 Upstream 52bp
chr11 64854476 64854476 1 + C T UCEC 64854475 + 64854455 64854495 41 CTACAGCCAGGCCCCCCGGCCCCCAGCTTCCCCAGGCCGGC CTACAGCCAGGCCCCCCGGCCTCCAGCTTCCCCAGGCCGGC < 41bp 0.608577997009338 0.835732440786992 0.3647372 0.90622616 prediction 0.454308887555308 Functional Gain - ZFPL1 ENSG00000162300 CDS Human protein_coding chr11:64854475 chr11:64854476 synonymous SNV . 0 22 hm5C_associated_SNPs_116441 0 0 1 0 2 ZFPL1 chr11:64854400 3'AG 64854400 Downstream 77bp
chr11 64854476 64854476 1 + C T UCEC 64854475 + 64854455 64854495 41 CTACAGCCAGGCCCCCCGGCCCCCAGCTTCCCCAGGCCGGC CTACAGCCAGGCCCCCCGGCCTCCAGCTTCCCCAGGCCGGC < 41bp 0.608577997009338 0.835732440786992 0.3647372 0.90622616 prediction 0.454308887555308 Functional Gain - ZFPL1 ENSG00000162300 CDS Human protein_coding chr11:64854475 chr11:64854476 synonymous SNV . 0 22 hm5C_associated_SNPs_116441 0 0 1 0 2 ZFPL1 chr11:64854546 5'GT 64854546 Upstream 71bp
chr14 100795748 100795748 1 + C A UCEC 100795747 + 100795727 100795767 41 GGGCTGTGCAGGAGTCCTGGCCTGGGCTGTGGCCACCCCCA GGGCTGTGCAGGAGTCCTGGCATGGGCTGTGGCCACCCCCA < 41bp 0.473639255472966 0.727143626434879 0.27795777 0.53607905 prediction 0.454287252869757 Functional Gain - SLC25A47 ENSG00000140107 CDS Human protein_coding chr14:100795747 chr14:100795748 synonymous SNV . 0 22 hm5C_associated_SNPs_116444 0 0 0 0 1 SLC25A47 chr14:100795702 3'AG 100795702 Downstream 47bp
chr9 138440641 138440641 1 + T C rs2853652 138440639 + 138440619 138440659 41 CTCTCGGAGGAGGACATTTTCATGCCCCTGCAGACGGGTGA CTCTCGGAGGAGGACATTTTCACGCCCCTGCAGACGGGTGA < 41bp 0.552746920292145 0.779887160644627 0.35869128 0.26899362 prediction 0.454280480704965 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138440639 chr9:138440641 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_116446 0 0 0 0 2 OBP2A chr9:138440554 3'AG 138440554 Downstream 88bp
chr9 138440641 138440641 1 + T C rs2853652 138440639 + 138440619 138440659 41 CTCTCGGAGGAGGACATTTTCATGCCCCTGCAGACGGGTGA CTCTCGGAGGAGGACATTTTCACGCCCCTGCAGACGGGTGA < 41bp 0.552746920292145 0.779887160644627 0.35869128 0.26899362 prediction 0.454280480704965 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138440639 chr9:138440641 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_116446 0 0 0 0 2 OBP2A chr9:138440655 5'GT 138440655 Upstream 15bp
chr11 94300761 94300761 1 + C A rs550779043 94300757 + 94300737 94300777 41 CCACAGAAGTGGGGCGCATCCAAGCCTCGCCATTGGTGTGT CCACAGAAGTGGGGCGCATCCAAGACTCGCCATTGGTGTGT < 41bp 0.692727930974904 0.91985543956297 0.31905323 0.42284417 prediction 0.454255017176134 Functional Gain - PIWIL4 ENSG00000134627 CDS Human protein_coding chr11:94300757 chr11:94300761 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_116449 0 0 0 0 1 PIWIL4 chr11:94300771 5'GT 94300771 Upstream 11bp
chr5 43246136 43246136 1 + C A LUAD 43246132 + 43246112 43246152 41 GAAATCGGAAGTGGAAACTTCTCCCAAGTGAAGCTTGGGAT GAAATCGGAAGTGGAAACTTCTCCAAAGTGAAGCTTGGGAT < 41bp 0.279305407126959 0.727122406063371 0.7740123 0.9629669 prediction 0.454244812126743 Functional Gain - NIM1K ENSG00000177453 CDS Human protein_coding chr5:43246132 chr5:43246136 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_116451 0 0 0 0 1 NIM1K chr5:43246169 5'GT 43246169 Upstream 34bp
chr8 19809402 19809402 1 + C T OV 19809401 + 19809381 19809421 41 TCAGGAGCATTACCCAGTGTCCGCGGGCTACACCAAACTGG TCAGGAGCATTACCCAGTGTCTGCGGGCTACACCAAACTGG < 41bp 0.556174111657746 0.783292123967861 0.5437313 0.3793584 prediction 0.45423602462023 Functional Gain - LPL ENSG00000175445 CDS Human protein_coding chr8:19809401 chr8:19809402 synonymous SNV . 0 22 hm5C_associated_SNPs_116453 0 0 0 0 1 LPL chr8:19809459 5'GT 19809459 Upstream 58bp
chr20 44576249 44576249 1 + C G rs200149076 44576248 + 44576228 44576268 41 TTGCCAAGTGGGCGCCGACGCCTGAACGGCTGCAGGAGCTG TTGCCAAGTGGGCGCCGACGCGTGAACGGCTGCAGGAGCTG < 41bp 0.648268766366788 0.875384662791802 0.14173973 0.33864158 prediction 0.454231792850028 Functional Gain - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44576248 chr20:44576249 nonsynonymous SNV 0.862 1 22 hm5C_associated_SNPs_116454 0 0 1 0 1 PCIF1 chr20:44576163 3'AG 44576163 Downstream 87bp
chr5 161324208 161324208 1 + C T GBM 161324207 + 161324187 161324227 41 CTAATTTGGCCAGGGGCGACCCGGGCTTAGCCACCATTGCT CTAATTTGGCCAGGGGCGACCTGGGCTTAGCCACCATTGCT < 41bp 0.498037134858785 0.727115686269462 0.91638196 0.907959 prediction 0.454231372538925 Functional Gain - GABRA1 ENSG00000022355 CDS Human protein_coding chr5:161324207 chr5:161324208 nonsynonymous SNV 0.861 2 22 hm5C_associated_SNPs_116455 0 0 0 0 1 GABRA1 chr5:161324117 3'AG 161324117 Downstream 92bp
chr17 47295174 47295174 1 + C T SKCM 47295173 + 47295153 47295193 41 CCACTGTCCAGCGGCTGCCCCCCGGCCAGAAGGTCATCGCC CCACTGTCCAGCGGCTGCCCCTCGGCCAGAAGGTCATCGCC < 41bp 0.473088019247985 0.727109794786948 0.17351416 0.47297037 prediction 0.454219589573896 Functional Gain - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47295173 chr17:47295174 nonsynonymous SNV 0.351 1 22 hm5C_associated_SNPs_116458 0 0 0 0 1 ABI3 chr17:47295101 3'AG 47295101 Downstream 74bp
chr12 131356638 131356638 1 + C T rs147215193 131356637 + 131356617 131356657 41 CGCTTCCGCCATCTTTCCAGCCTCAGTCGGACGGGCGCGGA CGCTTCCGCCATCTTTCCAGCTTCAGTCGGACGGGCGCGGA < 41bp 0.504186570559883 0.731291073977306 0.18119001 0.24226907 prediction 0.454209006834847 Functional Gain - RAN ENSG00000132341 CDS Human protein_coding chr12:131356637 chr12:131356638 synonymous SNV . 0 22 hm5C_associated_SNPs_116460 0 0 1 0 1 RAN chr12:131356671 5'GT 131356671 Upstream 34bp
chr22 39418965 39418965 1 + A G UCEC 39418962 + 39418942 39418982 41 CGCTCAAATCTCCTTTGGGACACAGGGGTCTTTCGAGGCCC CGCTCAAATCTCCTTTGGGACACGGGGGTCTTTCGAGGCCC < 41bp 0.578380256876327 0.805481962774939 0.41026673 0.63800555 prediction 0.454203411797223 Functional Gain - APOBEC3D ENSG00000243811 CDS Human protein_coding chr22:39418962 chr22:39418965 synonymous SNV . 0 24 hm5C_associated_SNPs_116462 0 0 0 0 1 APOBEC3D chr22:39419019 5'GT 39419019 Upstream 55bp
chr3 186570959 186570959 1 - G T READ 186570963 - 186570943 186570983 41 GCCCTGGGATGCCCGCCATCCAACCTGTGCAGGCCCCCTTG GCCCTGGGATGCCCGCCATCCAACATGTGCAGGCCCCCTTG < 41bp 0.703082587591581 0.930181192913711 0.046642333 0.01353699 prediction 0.454197210644259 Functional Gain - ADIPOQ ENSG00000181092 CDS Human protein_coding chr3:186570963 chr3:186570959 nonsynonymous SNV 0.993 3 25 hm5C_associated_SNPs_116464 0 0 0 0 1 ADIPOQ chr3:186571031 3'AG 186571031 Downstream 73bp
chr19 35510163 35510163 1 + C A STAD 35510162 + 35510142 35510182 41 CGGGTGCTGACGTACACCATCCCCATCAGCAACCCACTGGG CGGGTGCTGACGTACACCATCACCATCAGCAACCCACTGGG < 41bp 0.580960025573573 0.808056442877464 0.0478653 0.06274283 prediction 0.454192834607783 Functional Gain - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35510162 chr19:35510163 nonsynonymous SNV 0.978 3 22 hm5C_associated_SNPs_116466 0 0 1 0 2 GRAMD1A chr19:35510095 3'AG 35510095 Downstream 69bp
chr19 35510163 35510163 1 + C A STAD 35510162 + 35510142 35510182 41 CGGGTGCTGACGTACACCATCCCCATCAGCAACCCACTGGG CGGGTGCTGACGTACACCATCACCATCAGCAACCCACTGGG < 41bp 0.580960025573573 0.808056442877464 0.0478653 0.06274283 prediction 0.454192834607783 Functional Gain - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35510162 chr19:35510163 nonsynonymous SNV 0.978 3 22 hm5C_associated_SNPs_116466 0 0 1 0 2 GRAMD1A chr19:35510213 5'GT 35510213 Upstream 51bp
chr20 36993333 36993333 1 + A G rs2232607 36993330 + 36993310 36993350 41 AATGGTCTACTTTGCCATCTCGGATTATGTCTTCAACACGG AATGGTCTACTTTGCCATCTCGGGTTATGTCTTCAACACGG < 41bp 0.564629418459627 0.791722479560722 0.29013866 0.79171145 prediction 0.454186122202191 Functional Gain - LBP ENSG00000129988 CDS Human protein_coding chr20:36993330 chr20:36993333 nonsynonymous SNV 0.155 2 24 hm5C_associated_SNPs_116467 0 0 0 0 1 LBP chr20:36993406 5'GT 36993406 Upstream 74bp
chr19 47763622 47763622 1 + A G rs141618668 47763619 + 47763599 47763639 41 AAAGCTGAACTTGAGGGAGTCGCAGTCACAGCTCCCCGAAA AAAGCTGAACTTGAGGGAGTCGCGGTCACAGCTCCCCGAAA < 41bp 0.563185795294794 0.790260849320182 0.49751106 0.8724385 prediction 0.454150108050777 Functional Gain - CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763619 chr19:47763622 synonymous SNV . 0 24 hm5C_associated_SNPs_116472 0 0 1 0 2 CCDC9 chr19:47763578 3'AG 47763578 Downstream 45bp
chr19 47763622 47763622 1 + A G rs141618668 47763619 + 47763599 47763639 41 AAAGCTGAACTTGAGGGAGTCGCAGTCACAGCTCCCCGAAA AAAGCTGAACTTGAGGGAGTCGCGGTCACAGCTCCCCGAAA < 41bp 0.563185795294794 0.790260849320182 0.49751106 0.8724385 prediction 0.454150108050777 Functional Gain - CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763619 chr19:47763622 synonymous SNV . 0 24 hm5C_associated_SNPs_116472 0 0 1 0 2 CCDC9 chr19:47763679 5'GT 47763679 Upstream 58bp
chr19 48954339 48954339 1 + C T COAD 48954338 + 48954318 48954358 41 TCCATCCGCATCTGGGACATCCGGGCAGCCCCCAGCAAGGC TCCATCCGCATCTGGGACATCTGGGCAGCCCCCAGCAAGGC < 41bp 0.568809152049555 0.795879152526232 0.92144334 0.48556513 prediction 0.454140000953354 Functional Gain - GRWD1 ENSG00000105447 CDS Human protein_coding chr19:48954338 chr19:48954339 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_116474 0 0 1 0 1 GRWD1 chr19:48954291 3'AG 48954291 Downstream 49bp
chr4 129100644 129100644 1 + T C rs571725869 129100642 + 129100622 129100662 41 GGGTAATGGATTCCAGAGACCGTGGGCCAGGAACATCCTCT GGGTAATGGATTCCAGAGACCGCGGGCCAGGAACATCCTCT < 41bp 0.457857407650499 0.727060620102722 0.34513038 0.363517 prediction 0.454121240205445 Functional Gain - LARP1B ENSG00000138709 CDS Human protein_coding chr4:129100642 chr4:129100644 synonymous SNV . 0 23 hm5C_associated_SNPs_116476 0 0 0 0 2 LARP1B chr4:129100561 3'AG 129100561 Downstream 84bp
chr4 129100644 129100644 1 + T C rs571725869 129100642 + 129100622 129100662 41 GGGTAATGGATTCCAGAGACCGTGGGCCAGGAACATCCTCT GGGTAATGGATTCCAGAGACCGCGGGCCAGGAACATCCTCT < 41bp 0.457857407650499 0.727060620102722 0.34513038 0.363517 prediction 0.454121240205445 Functional Gain - LARP1B ENSG00000138709 CDS Human protein_coding chr4:129100642 chr4:129100644 synonymous SNV . 0 23 hm5C_associated_SNPs_116476 0 0 0 0 2 LARP1B chr4:129100667 5'GT 129100667 Upstream 24bp
chr2 131883457 131883457 1 + C T COAD 131883456 + 131883436 131883476 41 CCAATGGACTGCATCAACATCCGCACGGGGCAGGAATGTCG CCAATGGACTGCATCAACATCTGCACGGGGCAGGAATGTCG < 41bp 0.471049313148012 0.72705582028632 0.056955874 0.09034231 prediction 0.45411164057264 Functional Gain - PLEKHB2 ENSG00000115762 CDS Human protein_coding chr2:131883456 chr2:131883457 nonsynonymous SNV 0.955 3 22 hm5C_associated_SNPs_116477 0 0 1 0 1 PLEKHB2 chr2:131883478 5'GT 131883478 Upstream 22bp
chr21 45094916 45094916 1 + C T UCEC 45094915 + 45094895 45094935 41 GCATGCGTTTGGTTCTTTAGCCGAATCAAGGTTTTCTTGGA GCATGCGTTTGGTTCTTTAGCTGAATCAAGGTTTTCTTGGA < 41bp 0.513129632660161 0.740181504887683 0.56026196 0.28251964 prediction 0.454103744455043 Functional Gain - RRP1B ENSG00000160208 CDS Human protein_coding chr21:45094915 chr21:45094916 stopgain 0.888 0 22 hm5C_associated_SNPs_116480 0 0 1 0 1 RRP1B chr21:45094915 3'AG 45094915 Downstream 2bp
chr19 13059625 13059625 1 + A G BLCA 13059622 + 13059602 13059642 41 ACCGAGCCGTGGAGTATCTGCTCACGGTGAGGTGGGGCTTC ACCGAGCCGTGGAGTATCTGCTCGCGGTGAGGTGGGGCTTC < 41bp 0.564813883001194 0.791861981716409 0.08636987 0.1901586 prediction 0.45409619743043 Functional Gain - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13059622 chr19:13059625 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_116483 0 0 1 0 1 RAD23A chr19:13059627 5'GT 13059627 Upstream 3bp
chr12 121416877 121416877 1 + C A LUSC 121416876 + 121416856 121416896 41 GGAGGCGGCCCACCAGAAAGCCGTGGTGGAGACCCTTCTGC GGAGGCGGCCCACCAGAAAGCAGTGGTGGAGACCCTTCTGC < 41bp 0.556121892728868 0.783165847102548 0.68666446 0.5841876 prediction 0.45408790874736 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121416876 chr12:121416877 synonymous SNV . 0 22 hm5C_associated_SNPs_116484 0 0 1 0 1 HNF1A chr12:121416897 5'GT 121416897 Upstream 21bp
chr12 122265902 122265902 1 + C T UCEC 122265901 + 122265881 122265921 41 ATCGGGAGCAGCTACATGTTCCGGGTGGACCATGACACCAT ATCGGGAGCAGCTACATGTTCTGGGTGGACCATGACACCAT < 41bp 0.573650822948342 0.800694363275439 0.8404684 0.49126014 prediction 0.454087080654193 Functional Gain - SETD1B ENSG00000139718 CDS Human protein_coding chr12:122265901 chr12:122265902 nonsynonymous SNV 0.986 5 22 hm5C_associated_SNPs_116485 0 0 1 0 2 SETD1B chr12:122265839 3'AG 122265839 Downstream 64bp
chr12 122265902 122265902 1 + C T UCEC 122265901 + 122265881 122265921 41 ATCGGGAGCAGCTACATGTTCCGGGTGGACCATGACACCAT ATCGGGAGCAGCTACATGTTCTGGGTGGACCATGACACCAT < 41bp 0.573650822948342 0.800694363275439 0.8404684 0.49126014 prediction 0.454087080654193 Functional Gain - SETD1B ENSG00000139718 CDS Human protein_coding chr12:122265901 chr12:122265902 nonsynonymous SNV 0.986 5 22 hm5C_associated_SNPs_116485 0 0 1 0 2 SETD1B chr12:122265976 5'GT 122265976 Upstream 75bp
chr3 183996305 183996305 1 + C A LUSC 183996301 + 183996281 183996321 41 TGGACCAGTCTGGGCTCTTTCTGCCCTCTCGGGATTACTAC TGGACCAGTCTGGGCTCTTTCTGCACTCTCGGGATTACTAC < 41bp 0.304047241141194 0.727039303312656 0.13896397 0.12647352 prediction 0.454078606625313 Functional Gain - ECE2 ENSG00000145194 CDS Human protein_coding chr3:183996301 chr3:183996305 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_116487 0 0 0 0 2 ECE2 chr3:183996280 3'AG 183996280 Downstream 26bp
chr3 183996305 183996305 1 + C A LUSC 183996301 + 183996281 183996321 41 TGGACCAGTCTGGGCTCTTTCTGCCCTCTCGGGATTACTAC TGGACCAGTCTGGGCTCTTTCTGCACTCTCGGGATTACTAC < 41bp 0.304047241141194 0.727039303312656 0.13896397 0.12647352 prediction 0.454078606625313 Functional Gain - ECE2 ENSG00000145194 CDS Human protein_coding chr3:183996301 chr3:183996305 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_116487 0 0 0 0 2 ECE2 chr3:183996345 5'GT 183996345 Upstream 41bp
chr1 11584091 11584091 1 + C T COAD 11584090 + 11584070 11584110 41 TCAGGGGTCCCCTGGGCTAGCCGGCCTGAGGCCACCCTGCA TCAGGGGTCCCCTGGGCTAGCTGGCCTGAGGCCACCCTGCA < 41bp 0.506792636333522 0.733830857118783 0.8448011 0.5235052 prediction 0.454076441570521 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11584090 chr1:11584091 nonsynonymous SNV 0.012 3 22 hm5C_associated_SNPs_116488 0 0 0 0 1 DISP3 chr1:11583999 3'AG 11583999 Downstream 93bp
chr19 1105487 1105487 1 + C T HNSC 1105486 + 1105466 1105506 41 GTTTGCGGATCCTGGCCTTCCCGTGTAACCAGTTCGGGAAG GTTTGCGGATCCTGGCCTTCCTGTGTAACCAGTTCGGGAAG < 41bp 0.535465365488223 0.762501871260021 0.22056586 0.094522506 prediction 0.454073011543595 Functional Gain - GPX4 ENSG00000167468 CDS Human protein_coding chr19:1105486 chr19:1105487 nonsynonymous SNV 0.969 3 22 hm5C_associated_SNPs_116490 0 0 1 0 1 GPX4 chr19:1105509 5'GT 1105509 Upstream 23bp
chr1 201860964 201860964 1 + C T COAD 201860963 + 201860943 201860983 41 TGCCACCACAGCCCTCTTACCCGGGAGCCTGAGGAACCAGC TGCCACCACAGCCCTCTTACCTGGGAGCCTGAGGAACCAGC < 41bp 0.509293703238053 0.73632879336737 0.91711336 0.7183101 prediction 0.454070180258635 Functional Gain - SHISA4 ENSG00000198892 CDS Human protein_coding chr1:201860963 chr1:201860964 nonsynonymous SNV 0.853 3 22 hm5C_associated_SNPs_116491 0 0 0 0 1 SHISA4 chr1:201860928 3'AG 201860928 Downstream 37bp
chr2 101087006 101087006 1 + T C PRAD 101087004 + 101086984 101087024 41 TTGGCCATCTACTGCTTCTGCATGCTACAGATTCCCTCCTC TTGGCCATCTACTGCTTCTGCACGCTACAGATTCCCTCCTC < 41bp 0.480897886814447 0.727034717526049 0.022150904 0.032869905 prediction 0.454069435052098 Functional Gain - NMS ENSG00000204640 CDS Human protein_coding chr2:101087004 chr2:101087006 nonsynonymous SNV 0.818 0 23 hm5C_associated_SNPs_116493 0 0 0 0 1 NMS chr2:101087026 5'GT 101087026 Upstream 21bp
chr9 71835835 71835835 1 + C T rs181450555 71835834 + 71835814 71835854 41 GCCCCGGAAGGTCCAGGTGGCCGCACTTCAGGCCAGCCCTC GCCCCGGAAGGTCCAGGTGGCTGCACTTCAGGCCAGCCCTC < 41bp 0.484894755573099 0.727027594071474 0.614181 0.8711412 prediction 0.454055188142948 Functional Gain - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71835834 chr9:71835835 synonymous SNV . 0 22 hm5C_associated_SNPs_116497 1 0 1 0 1 TJP2 chr9:71835803 3'AG 71835803 Downstream 33bp
chr11 76829311 76829311 1 + T C rs536151747 76829309 + 76829289 76829329 41 CGTGGGAGGAGGCCCGGCTGCATGGCGCCTGGACGCTGCAT CGTGGGAGGAGGCCCGGCTGCACGGCGCCTGGACGCTGCAT < 41bp 0.595296507262462 0.822322981432418 0.33651316 0.33856422 prediction 0.454052948339912 Functional Gain - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76829309 chr11:76829311 synonymous SNV . 0 23 hm5C_associated_SNPs_116500 0 0 0 0 1 CAPN5 chr11:76829398 5'GT 76829398 Upstream 88bp
chr11 71693935 71693935 1 + A G UCEC 71693932 + 71693912 71693952 41 TTTGTTACCTTCCGAGCCACCCGAAAACCTCTAGTACAGAC TTTGTTACCTTCCGAGCCACCCGGAAACCTCTAGTACAGAC < 41bp 0.49013044688181 0.72702486426747 0.0067727566 0.0036872625 prediction 0.454049728534941 Functional Gain - RNF121 ENSG00000137522 CDS Human protein_coding chr11:71693932 chr11:71693935 synonymous SNV . 0 24 hm5C_associated_SNPs_116502 0 0 1 0 1 RNF121 chr11:71693961 5'GT 71693961 Upstream 27bp
chr19 55086405 55086405 1 + C T LGG 55086404 + 55086384 55086424 41 TCTCCGTGGGCCCCGTGAGCCCGAGTCGCAGGTGGTCGTAC TCTCCGTGGGCCCCGTGAGCCTGAGTCGCAGGTGGTCGTAC < 41bp 0.517659297524547 0.744674593501657 0.27673173 0.27435037 prediction 0.454030591954218 Functional Gain - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55086404 chr19:55086405 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_116506 0 0 0 0 1 LILRA2 chr19:55086500 5'GT 55086500 Upstream 96bp
chr19 34912478 34912478 1 + C A THCA 34912477 + 34912457 34912497 41 CTGCCCTACATCAGAAGTCACCGAGCTCCCAGCCTGCAGCC CTGCCCTACATCAGAAGTCACAGAGCTCCCAGCCTGCAGCC < 41bp 0.459989881910811 0.727006934920658 0.18561903 0.662311 prediction 0.454013869841317 Functional Gain - PDCD2L ENSG00000126249 CDS Human protein_coding chr19:34912477 chr19:34912478 synonymous SNV . 0 22 hm5C_associated_SNPs_116509 0 0 1 0 2 PDCD2L chr19:34912424 3'AG 34912424 Downstream 55bp
chr19 34912478 34912478 1 + C A THCA 34912477 + 34912457 34912497 41 CTGCCCTACATCAGAAGTCACCGAGCTCCCAGCCTGCAGCC CTGCCCTACATCAGAAGTCACAGAGCTCCCAGCCTGCAGCC < 41bp 0.459989881910811 0.727006934920658 0.18561903 0.662311 prediction 0.454013869841317 Functional Gain - PDCD2L ENSG00000126249 CDS Human protein_coding chr19:34912477 chr19:34912478 synonymous SNV . 0 22 hm5C_associated_SNPs_116509 0 0 1 0 2 PDCD2L chr19:34912572 5'GT 34912572 Upstream 95bp
chr10 12209798 12209798 1 + T G UCEC 12209796 + 12209776 12209816 41 GGCGTCCACTGTGAGATGTTCTTCAGCTACCAGAGCTGTGG GGCGTCCACTGTGAGATGTTCTGCAGCTACCAGAGCTGTGG < 41bp 0.387489758415869 0.727003466353529 0.09414533 0.14310852 prediction 0.454006932707057 Functional Gain - NUDT5 ENSG00000165609 CDS Human other chr10:12209796 chr10:12209798 nonsynonymous SNV 0.957 1 23 hm5C_associated_SNPs_116511 0 0 0 0 2 NUDT5 chr10:12209752 3'AG 12209752 Downstream 47bp
chr10 12209798 12209798 1 + T G UCEC 12209796 + 12209776 12209816 41 GGCGTCCACTGTGAGATGTTCTTCAGCTACCAGAGCTGTGG GGCGTCCACTGTGAGATGTTCTGCAGCTACCAGAGCTGTGG < 41bp 0.387489758415869 0.727003466353529 0.09414533 0.14310852 prediction 0.454006932707057 Functional Gain - NUDT5 ENSG00000165609 CDS Human protein_coding chr10:12209796 chr10:12209798 nonsynonymous SNV 0.957 1 23 hm5C_associated_SNPs_116511 0 0 0 0 2 NUDT5;SEC61A2 chr10:12209892 5'GT 12209892 Upstream 95bp
chr17 73106605 73106605 1 + C A HNSC 73106604 + 73106584 73106624 41 CTCGCCAACTTCGCTTATGACCCCAGCAACTACGAGTATCT CTCGCCAACTTCGCTTATGACACCAGCAACTACGAGTATCT < 41bp 0.580484319619698 0.807487591635482 0.12016329 0.20413199 prediction 0.454006544031567 Functional Gain - ARMC7 ENSG00000125449 CDS Human protein_coding chr17:73106604 chr17:73106605 nonsynonymous SNV 0.910 4 22 hm5C_associated_SNPs_116512 0 0 1 0 3 ARMC7 chr17:73106558 3'AG 73106558 Downstream 48bp
chr17 73106605 73106605 1 + C A HNSC 73106604 + 73106584 73106624 41 CTCGCCAACTTCGCTTATGACCCCAGCAACTACGAGTATCT CTCGCCAACTTCGCTTATGACACCAGCAACTACGAGTATCT < 41bp 0.580484319619698 0.807487591635482 0.12016329 0.20413199 prediction 0.454006544031567 Functional Gain - ARMC7 ENSG00000125449 CDS Human protein_coding chr17:73106604 chr17:73106605 nonsynonymous SNV 0.910 4 22 hm5C_associated_SNPs_116512 0 0 1 0 3 ARMC7 chr17:73106637 5'GT 73106637 Upstream 33bp
chr17 73106605 73106605 1 + C A HNSC 73106604 + 73106584 73106624 41 CTCGCCAACTTCGCTTATGACCCCAGCAACTACGAGTATCT CTCGCCAACTTCGCTTATGACACCAGCAACTACGAGTATCT < 41bp 0.580484319619698 0.807487591635482 0.12016329 0.20413199 prediction 0.454006544031567 Functional Gain - ARMC7 ENSG00000125449 CDS Human protein_coding chr17:73106604 chr17:73106605 nonsynonymous SNV 0.910 4 22 hm5C_associated_SNPs_116512 0 0 1 0 3 ARMC7 chr17:73106701 5'GT 73106701 Upstream 97bp
chr19 43858418 43858418 1 + C T DLBC 43858417 + 43858397 43858437 41 GAGGCCAAGGACCAGGAGCCCCGCGTCACTGAGCACCGGAT GAGGCCAAGGACCAGGAGCCCTGCGTCACTGAGCACCGGAT < 41bp 0.533637228783863 0.760629440602071 0.120862424 0.10930145 prediction 0.453984423636416 Functional Gain - CD177 ENSG00000204936 CDS Human protein_coding chr19:43858417 chr19:43858418 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_116514 0 0 0 0 1 CD177 chr19:43858359 3'AG 43858359 Downstream 60bp
chr13 114290349 114290349 1 + C T UCEC 114290348 + 114290328 114290368 41 CATGCGGAGCAGCAGGCCAGCCGGCCACCGCCACCCAACTC CATGCGGAGCAGCAGGCCAGCTGGCCACCGCCACCCAACTC < 41bp 0.556537492820452 0.783528200929542 0.3488803 0.20208293 prediction 0.453981416218179 Functional Gain - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114290348 chr13:114290349 nonsynonymous SNV 0.988 1 22 hm5C_associated_SNPs_116515 0 0 1 0 2 TFDP1 chr13:114290292 3'AG 114290292 Downstream 58bp
chr13 114290349 114290349 1 + C T UCEC 114290348 + 114290328 114290368 41 CATGCGGAGCAGCAGGCCAGCCGGCCACCGCCACCCAACTC CATGCGGAGCAGCAGGCCAGCTGGCCACCGCCACCCAACTC < 41bp 0.556537492820452 0.783528200929542 0.3488803 0.20208293 prediction 0.453981416218179 Functional Gain - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114290348 chr13:114290349 nonsynonymous SNV 0.988 1 22 hm5C_associated_SNPs_116515 0 0 1 0 2 TFDP1 chr13:114290443 5'GT 114290443 Upstream 95bp
chr8 24207459 24207459 1 + C A SKCM 24207458 + 24207438 24207478 41 GGTAATCCGGCACCAGAGCTCCAGAGAAAAGCAGAAGAAAG GGTAATCCGGCACCAGAGCTCAAGAGAAAAGCAGAAGAAAG < 41bp 0.589226605178726 0.816214491244084 0.90005684 0.9040118 prediction 0.453975772130716 Functional Gain - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24207458 chr8:24207459 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_116516 0 0 0 2 2 ADAM28 chr8:24207377 3'AG 24207377 Downstream 83bp
chr8 24207459 24207459 1 + C A SKCM 24207458 + 24207438 24207478 41 GGTAATCCGGCACCAGAGCTCCAGAGAAAAGCAGAAGAAAG GGTAATCCGGCACCAGAGCTCAAGAGAAAAGCAGAAGAAAG < 41bp 0.589226605178726 0.816214491244084 0.90005684 0.9040118 prediction 0.453975772130716 Functional Gain - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24207458 chr8:24207459 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_116516 0 0 0 2 2 ADAM28 chr8:24207485 5'GT 24207485 Upstream 27bp
chr7 2418817 2418817 1 + C T LUAD 2418816 + 2418796 2418836 41 ATGGAAGATTTCCGGAAGTACCGGAAAATGGCCCAGGAGCT ATGGAAGATTTCCGGAAGTACTGGAAAATGGCCCAGGAGCT < 41bp 0.568985037178208 0.795971202196842 0.88803077 0.75291955 prediction 0.453972330037267 Functional Gain - EIF3B ENSG00000106263 CDS Human protein_coding chr7:2418816 chr7:2418817 nonsynonymous SNV 0.945 4 22 hm5C_associated_SNPs_116517 0 0 1 0 2 EIF3B chr7:2418769 3'AG 2418769 Downstream 49bp
chr7 2418817 2418817 1 + C T LUAD 2418816 + 2418796 2418836 41 ATGGAAGATTTCCGGAAGTACCGGAAAATGGCCCAGGAGCT ATGGAAGATTTCCGGAAGTACTGGAAAATGGCCCAGGAGCT < 41bp 0.568985037178208 0.795971202196842 0.88803077 0.75291955 prediction 0.453972330037267 Functional Gain - EIF3B ENSG00000106263 CDS Human protein_coding chr7:2418816 chr7:2418817 nonsynonymous SNV 0.945 4 22 hm5C_associated_SNPs_116517 0 0 1 0 2 EIF3B chr7:2418877 5'GT 2418877 Upstream 61bp
chr8 19809442 19809442 1 + T A LIHC 19809438 + 19809418 19809458 41 CTGGTGGGACAGGATGTGGCCCGGTTTATCAACTGGATGGA CTGGTGGGACAGGATGTGGCCCGGATTATCAACTGGATGGA < 41bp 0.424432564539563 0.726978310767415 0.2564285 0.41869786 prediction 0.45395662153483 Functional Gain - LPL ENSG00000175445 CDS Human protein_coding chr8:19809438 chr8:19809442 nonsynonymous SNV 0.995 5 25 hm5C_associated_SNPs_116520 0 0 0 0 1 LPL chr8:19809459 5'GT 19809459 Upstream 18bp
chr16 88779068 88779068 1 + C A UCEC 88779067 + 88779047 88779087 41 GTCGGTGCTTTGGTGCTCTGCCCAGGAGCTGGTGGGATCCG GTCGGTGCTTTGGTGCTCTGCACAGGAGCTGGTGGGATCCG < 41bp 0.470047486199504 0.726978252951583 0.14568791 0.26521823 prediction 0.453956505903166 Functional Gain - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88779067 chr16:88779068 synonymous SNV . 0 22 hm5C_associated_SNPs_116521 0 0 1 0 1 CTU2 chr16:88779030 3'AG 88779030 Downstream 39bp
chr20 2384129 2384129 1 + C T SKCM 2384128 + 2384108 2384148 41 GGCAGGTTCTGGATGCCACCCCCCAGGAGGAGAGTGAAGGT GGCAGGTTCTGGATGCCACCCTCCAGGAGGAGAGTGAAGGT < 41bp 0.609781603636871 0.836757715305443 0.057876557 0.93109876 prediction 0.453952223337143 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2384128 chr20:2384129 nonsynonymous SNV 0.974 5 22 hm5C_associated_SNPs_116522 0 0 0 0 2 TGM6 chr20:2384043 3'AG 2384043 Downstream 87bp
chr20 2384129 2384129 1 + C T SKCM 2384128 + 2384108 2384148 41 GGCAGGTTCTGGATGCCACCCCCCAGGAGGAGAGTGAAGGT GGCAGGTTCTGGATGCCACCCTCCAGGAGGAGAGTGAAGGT < 41bp 0.609781603636871 0.836757715305443 0.057876557 0.93109876 prediction 0.453952223337143 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2384128 chr20:2384129 nonsynonymous SNV 0.974 5 22 hm5C_associated_SNPs_116522 0 0 0 0 2 TGM6 chr20:2384146 5'GT 2384146 Upstream 18bp
chr3 56591221 56591221 1 + A G rs150427964 56591218 + 56591198 56591238 41 TTGCTGAGCGGCGGCGGCAACCGACGTACACAAGGGGCTTG TTGCTGAGCGGCGGCGGCAACCGGCGTACACAAGGGGCTTG < 41bp 0.535047872486256 0.762021478148506 0.3886024 0.8937442 prediction 0.4539472113245 Functional Gain - CCDC66 ENSG00000180376 UTR5 Human protein_coding chr3:56591218 chr3:56591221 . . 0 24 hm5C_associated_SNPs_116525 0 0 0 0 2 CCDC66 chr3:56591262 5'GT 56591262 Upstream 42bp
chr3 56591221 56591221 1 + A G rs150427964 56591218 + 56591198 56591238 41 TTGCTGAGCGGCGGCGGCAACCGACGTACACAAGGGGCTTG TTGCTGAGCGGCGGCGGCAACCGGCGTACACAAGGGGCTTG < 41bp 0.535047872486256 0.762021478148506 0.3886024 0.8937442 prediction 0.4539472113245 Functional Gain - CCDC66 ENSG00000180376 UTR5 Human protein_coding chr3:56591218 chr3:56591221 . . 0 24 hm5C_associated_SNPs_116525 0 0 0 0 2 CCDC66 chr3:56591281 5'GT 56591281 Upstream 61bp
chr2 121742247 121742247 1 + C A UCEC 121742246 + 121742226 121742266 41 GCCTGGCGGCCCAGAGAGCACCGAGGCCAGCAGCACCAGCC GCCTGGCGGCCCAGAGAGCACAGAGGCCAGCAGCACCAGCC < 41bp 0.568517400352487 0.795485142103355 0.8722273 0.88506377 prediction 0.453935483501736 Functional Gain - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121742246 chr2:121742247 synonymous SNV . 0 22 hm5C_associated_SNPs_116528 0 0 0 0 1 GLI2 chr2:121742319 5'GT 121742319 Upstream 73bp
chr15 22955225 22955225 1 + A G LUAD 22955222 + 22955202 22955242 41 CTTGCGGGGCGAGAAGGACCCCAAGAGCGGCTTCGACATAA CTTGCGGGGCGAGAAGGACCCCAGGAGCGGCTTCGACATAA < 41bp 0.53209122836101 0.759050560501595 0.058149338 0.35445708 prediction 0.45391866428117 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:22955222 chr15:22955225 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_116532 0 0 1 0 1 CYFIP1 chr15:22955280 5'GT 22955280 Upstream 56bp
chr17 27075138 27075138 1 + C T UCEC 27075137 + 27075117 27075157 41 CACACTTGCAGCATGACTGCCCCAAGCGGCGCCTCAAGTGC CACACTTGCAGCATGACTGCCTCAAGCGGCGCCTCAAGTGC < 41bp 0.444509684448858 0.726957181345365 0.012981147 0.06425622 prediction 0.45391436269073 Functional Gain - TRAF4 ENSG00000076604 CDS Human protein_coding chr17:27075137 chr17:27075138 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_116534 0 0 1 0 1 TRAF4 chr17:27075196 5'GT 27075196 Upstream 59bp
chr6 26390341 26390341 1 + T C STAD 26390339 + 26390319 26390359 41 ATCCTGGCTGTTTTCATCATCTTCATGGCTGTCAGCATCTG ATCCTGGCTGTTTTCATCATCTCCATGGCTGTCAGCATCTG < 41bp 0.432323103399966 0.726953314909163 0.15563509 0.94741106 prediction 0.453906629818325 Functional Gain - BTN2A2 ENSG00000124508 CDS Human protein_coding chr6:26390339 chr6:26390341 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_116536 0 0 1 0 1 BTN2A2 chr6:26390439 5'GT 26390439 Upstream 99bp
chr1 17297200 17297200 1 + C T rs147926226 17297199 + 17297179 17297219 41 GCAGAGAAGGGCCGCCTGGACCGCACCCTCACGGGGGCTGA GCAGAGAAGGGCCGCCTGGACTGCACCCTCACGGGGGCTGA < 41bp 0.474650327674582 0.726952997570742 0.07821992 0.09388542 prediction 0.453905995141483 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17297199 chr1:17297200 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_116537 0 0 1 0 2 CROCC chr1:17297131 3'AG 17297131 Downstream 70bp
chr1 17297200 17297200 1 + C T rs147926226 17297199 + 17297179 17297219 41 GCAGAGAAGGGCCGCCTGGACCGCACCCTCACGGGGGCTGA GCAGAGAAGGGCCGCCTGGACTGCACCCTCACGGGGGCTGA < 41bp 0.474650327674582 0.726952997570742 0.07821992 0.09388542 prediction 0.453905995141483 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17297199 chr1:17297200 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_116537 0 0 1 0 2 CROCC chr1:17297262 5'GT 17297262 Upstream 63bp
chr10 101552068 101552068 1 + A G KIRC 101552065 + 101552045 101552085 41 ACAGAAGACTCTGGACAAGCCACAGTCCCTGCTGTTCGATA ACAGAAGACTCTGGACAAGCCACGGTCCCTGCTGTTCGATA < 41bp 0.484010295146469 0.726950331973695 0.08067471 0.2844141 prediction 0.453900663947389 Functional Gain - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101552065 chr10:101552068 synonymous SNV . 0 24 hm5C_associated_SNPs_116539 0 0 0 0 2 ABCC2 chr10:101551991 3'AG 101551991 Downstream 78bp
chr10 101552068 101552068 1 + A G KIRC 101552065 + 101552045 101552085 41 ACAGAAGACTCTGGACAAGCCACAGTCCCTGCTGTTCGATA ACAGAAGACTCTGGACAAGCCACGGTCCCTGCTGTTCGATA < 41bp 0.484010295146469 0.726950331973695 0.08067471 0.2844141 prediction 0.453900663947389 Functional Gain - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101552065 chr10:101552068 synonymous SNV . 0 24 hm5C_associated_SNPs_116539 0 0 0 0 2 ABCC2 chr10:101552116 5'GT 101552116 Upstream 49bp
chr17 42255640 42255640 1 + C G KIRP 42255636 + 42255616 42255656 41 AGCCAAGGCAGCTGCAGCACCTGGCCCGACTAGCTGTGCGC AGCCAAGGCAGCTGCAGCACCTGGGCCGACTAGCTGTGCGC < 41bp 0.620110595594425 0.847058851173054 0.15267843 0.8266459 prediction 0.453896511157258 Functional Gain - ASB16 ENSG00000161664 CDS Human protein_coding chr17:42255636 chr17:42255640 nonsynonymous SNV 0.794 3 25 hm5C_associated_SNPs_116540 0 0 0 0 1 ASB16 chr17:42255573 3'AG 42255573 Downstream 68bp
chr10 50824106 50824106 1 + C A rs41306415 50824105 + 50824085 50824125 41 ACTCCACACCAGAGATGTGGCCGGAATGCAGAGATGAAGCA ACTCCACACCAGAGATGTGGCAGGAATGCAGAGATGAAGCA < 41bp 0.570581614575235 0.797529087379216 0.21925616 0.35860372 prediction 0.453894945607961 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50824105 chr10:50824106 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_116541 0 0 0 0 2 CHAT chr10:50824069 3'AG 50824069 Downstream 38bp
chr10 50824106 50824106 1 + C A rs41306415 50824105 + 50824085 50824125 41 ACTCCACACCAGAGATGTGGCCGGAATGCAGAGATGAAGCA ACTCCACACCAGAGATGTGGCAGGAATGCAGAGATGAAGCA < 41bp 0.570581614575235 0.797529087379216 0.21925616 0.35860372 prediction 0.453894945607961 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50824105 chr10:50824106 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_116541 0 0 0 0 2 CHAT chr10:50824138 5'GT 50824138 Upstream 33bp
chr2 55746995 55746995 1 + C A STAD 55746994 + 55746974 55747014 41 GTGGAGAGCATCGCGGGGTTCCTGCGAGGCCCAGACTGGTC GTGGAGAGCATCGCGGGGTTCATGCGAGGCCCAGACTGGTC < 41bp 0.477688158199541 0.726945562242244 0.36090505 0.6563482 prediction 0.453891124484487 Functional Gain - CFAP36 ENSG00000163001 CDS Human protein_coding chr2:55746994 chr2:55746995 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_116542 0 0 1 0 1 CFAP36 chr2:55747052 5'GT 55747052 Upstream 58bp
chr2 231740407 231740407 1 + A G rs113416613 231740404 + 231740384 231740424 41 TGTCCTCCCAGGTCCGGACTCAGATGGAGCTGGAAGAGGAT TGTCCTCCCAGGTCCGGACTCAGGTGGAGCTGGAAGAGGAT < 41bp 0.536262723764769 0.763206077248025 0.7832894 0.8717275 prediction 0.45388670696651 Functional Gain - ITM2C ENSG00000135916 CDS Human protein_coding chr2:231740404 chr2:231740407 nonsynonymous SNV 0.851 0 24 hm5C_associated_SNPs_116543 0 0 1 0 1 ITM2C chr2:231740335 3'AG 231740335 Downstream 73bp
chr11 61723330 61723330 1 + C T DLBC 61723329 + 61723309 61723349 41 CTGCTGCGGCGCACGCTCATCCGCTACGCCAACCTGGGCAA CTGCTGCGGCGCACGCTCATCTGCTACGCCAACCTGGGCAA < 41bp 0.551866687815608 0.778804594372388 0.1749708 0.34927112 prediction 0.45387581311356 Functional Gain - BEST1 ENSG00000167995 CDS Human protein_coding chr11:61723329 chr11:61723330 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_116546 0 0 0 0 1 BEST1 chr11:61723423 5'GT 61723423 Upstream 94bp
chr14 23311892 23311892 1 + C G rs371769574 23311888 + 23311868 23311908 41 AGGAGACACCCACTTTGACTCTGCCGAGCCTTGGACTGTCA AGGAGACACCCACTTTGACTCTGCGGAGCCTTGGACTGTCA < 41bp 0.431210886907906 0.726937564976841 0.058312356 0.13738698 prediction 0.453875129953682 Functional Gain - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23311888 chr14:23311892 synonymous SNV . 0 25 hm5C_associated_SNPs_116547 0 0 0 0 1 MMP14 chr14:23311926 5'GT 23311926 Upstream 35bp
chr1 50659497 50659497 1 + C A LUAD 50659493 + 50659473 50659513 41 GATGCTAACCTCTATGTTAGCGGCCTTCCCAAAACCATGAC GATGCTAACCTCTATGTTAGCGGCATTCCCAAAACCATGAC < 41bp 0.707793369674244 0.934729158161195 0.41594064 0.4562362 prediction 0.453871576973901 Functional Gain - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50659493 chr1:50659497 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_116548 0 0 0 0 2 ELAVL4 chr1:50659437 3'AG 50659437 Downstream 61bp
chr1 50659497 50659497 1 + C A LUAD 50659493 + 50659473 50659513 41 GATGCTAACCTCTATGTTAGCGGCCTTCCCAAAACCATGAC GATGCTAACCTCTATGTTAGCGGCATTCCCAAAACCATGAC < 41bp 0.707793369674244 0.934729158161195 0.41594064 0.4562362 prediction 0.453871576973901 Functional Gain - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50659493 chr1:50659497 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_116548 0 0 0 0 2 ELAVL4 chr1:50659590 5'GT 50659590 Upstream 94bp
chr10 85970780 85970780 1 + C T rs542195636 85970779 + 85970759 85970799 41 CCTGGCTGTTGAAGTGAACACCCCAGAGAAGTTCAGTTCCA CCTGGCTGTTGAAGTGAACACTCCAGAGAAGTTCAGTTCCA < 41bp 0.603019794540353 0.829953705718406 0.24980718 0.9479021 prediction 0.453867822356105 Functional Gain - CDHR1 ENSG00000148600 CDS Human protein_coding chr10:85970779 chr10:85970780 synonymous SNV . 0 22 hm5C_associated_SNPs_116549 1 0 0 0 1 CDHR1 chr10:85970757 3'AG 85970757 Downstream 24bp
chr3 44607084 44607084 1 + C A COAD 44607083 + 44607063 44607103 41 CCCCTCAGTGGGGGCTCAGCCCCTGGAGCCCACCTGGAGCC CCCCTCAGTGGGGGCTCAGCCACTGGAGCCCACCTGGAGCC < 41bp 0.58674628709228 0.813676917232998 0.109713554 0.28127226 prediction 0.453861260281437 Functional Gain - ZKSCAN7 ENSG00000196345;ENSG00000273303 CDS Human other chr3:44607083 chr3:44607084 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_116550 0 0 0 0 1 ZKSCAN7 chr3:44607147 5'GT 44607147 Upstream 64bp
chr16 75256698 75256698 1 + A G UCEC 75256695 + 75256675 75256715 41 TCCCCGCCATCCACCCTGTGCTCAGCGGCCTGTCCAGGATC TCCCCGCCATCCACCCTGTGCTCGGCGGCCTGTCCAGGATC < 41bp 0.573937186282034 0.800865729380771 0.05304289 0.15991616 prediction 0.453857086197473 Functional Gain - CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256695 chr16:75256698 nonsynonymous SNV 0.015 1 24 hm5C_associated_SNPs_116551 0 0 0 0 2 CTRB1 chr16:75256666 3'AG 75256666 Downstream 33bp
chr16 75256698 75256698 1 + A G UCEC 75256695 + 75256675 75256715 41 TCCCCGCCATCCACCCTGTGCTCAGCGGCCTGTCCAGGATC TCCCCGCCATCCACCCTGTGCTCGGCGGCCTGTCCAGGATC < 41bp 0.573937186282034 0.800865729380771 0.05304289 0.15991616 prediction 0.453857086197473 Functional Gain - CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256695 chr16:75256698 nonsynonymous SNV 0.015 1 24 hm5C_associated_SNPs_116551 0 0 0 0 2 CTRB1 chr16:75256769 5'GT 75256769 Upstream 72bp
chr2 120776730 120776730 1 + C T STAD 120776729 + 120776709 120776749 41 CATGCAGAGAAGGAACGACTCCGAGAAGCACAACGCGCCGC CATGCAGAGAAGGAACGACTCTGAGAAGCACAACGCGCCGC < 41bp 0.538636185955573 0.76556233787832 0.23618925 0.21446976 prediction 0.453852303845494 Functional Gain - EPB41L5 ENSG00000115109 CDS Human protein_coding chr2:120776729 chr2:120776730 stopgain 0.997 1 22 hm5C_associated_SNPs_116552 0 0 0 0 1 EPB41L5 chr2:120776653 3'AG 120776653 Downstream 78bp
chr15 32915738 32915738 1 + C T COAD 32915737 + 32915717 32915757 41 TTTAGAAGACCATATTCATACCGAAGGGCTTTTTCGGAAAT TTTAGAAGACCATATTCATACTGAAGGGCTTTTTCGGAAAT < 41bp 0.470934829269582 0.726914476303685 0.0831804 0.11004627 prediction 0.45382895260737 Functional Gain - ARHGAP11A ENSG00000198826 CDS Human protein_coding chr15:32915737 chr15:32915738 synonymous SNV . 0 22 hm5C_associated_SNPs_116555 0 0 1 0 2 ARHGAP11A chr15:32915693 3'AG 32915693 Downstream 46bp
chr15 32915738 32915738 1 + C T COAD 32915737 + 32915717 32915757 41 TTTAGAAGACCATATTCATACCGAAGGGCTTTTTCGGAAAT TTTAGAAGACCATATTCATACTGAAGGGCTTTTTCGGAAAT < 41bp 0.470934829269582 0.726914476303685 0.0831804 0.11004627 prediction 0.45382895260737 Functional Gain - ARHGAP11A ENSG00000198826 CDS Human protein_coding chr15:32915737 chr15:32915738 synonymous SNV . 0 22 hm5C_associated_SNPs_116555 0 0 1 0 2 ARHGAP11A chr15:32915789 5'GT 32915789 Upstream 52bp
chr11 606519 606519 1 + C G HNSC 606515 + 606495 606535 41 CTGACCTGCTGGGCAGCATCCTGTCGGGCCAGAGCCTCCTG CTGACCTGCTGGGCAGCATCCTGTGGGGCCAGAGCCTCCTG < 41bp 0.426081392384391 0.726905777505742 0.10794172 0.26337603 prediction 0.453811555011483 Functional Gain - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:606515 chr11:606519 nonsynonymous SNV 0.961 4 25 hm5C_associated_SNPs_116556 0 0 1 0 2 PHRF1 chr11:606442 3'AG 606442 Downstream 78bp
chr11 606519 606519 1 + C G HNSC 606515 + 606495 606535 41 CTGACCTGCTGGGCAGCATCCTGTCGGGCCAGAGCCTCCTG CTGACCTGCTGGGCAGCATCCTGTGGGGCCAGAGCCTCCTG < 41bp 0.426081392384391 0.726905777505742 0.10794172 0.26337603 prediction 0.453811555011483 Functional Gain - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:606515 chr11:606519 nonsynonymous SNV 0.961 4 25 hm5C_associated_SNPs_116556 0 0 1 0 2 PHRF1 chr11:606596 5'GT 606596 Upstream 78bp
chr19 8320541 8320541 1 + C G GBM 8320540 + 8320520 8320560 41 TGGCCTCACGCTGCAGCAGACCCAGCGATGGTTCCGGAGAC TGGCCTCACGCTGCAGCAGACGCAGCGATGGTTCCGGAGAC < 41bp 0.472635535360506 0.726898950947254 0.8932586 0.7936846 prediction 0.453797901894507 Functional Gain - CERS4 ENSG00000090661 CDS Human protein_coding chr19:8320540 chr19:8320541 synonymous SNV . 0 22 hm5C_associated_SNPs_116559 0 0 0 0 2 CERS4 chr19:8320491 3'AG 8320491 Downstream 51bp
chr19 8320541 8320541 1 + C G GBM 8320540 + 8320520 8320560 41 TGGCCTCACGCTGCAGCAGACCCAGCGATGGTTCCGGAGAC TGGCCTCACGCTGCAGCAGACGCAGCGATGGTTCCGGAGAC < 41bp 0.472635535360506 0.726898950947254 0.8932586 0.7936846 prediction 0.453797901894507 Functional Gain - CERS4 ENSG00000090661 CDS Human protein_coding chr19:8320540 chr19:8320541 synonymous SNV . 0 22 hm5C_associated_SNPs_116559 0 0 0 0 2 CERS4 chr19:8320609 5'GT 8320609 Upstream 69bp
chr4 115597177 115597177 1 + T C STAD 115597175 + 115597155 115597195 41 ATTGGATAGATTATATTATTCGTCACAATGGAGCCCATCAC ATTGGATAGATTATATTATTCGCCACAATGGAGCCCATCAC < 41bp 0.611034832321788 0.837927518798609 0.04275918 0.07107562 prediction 0.453785372953642 Functional Gain - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115597175 chr4:115597177 synonymous SNV . 0 23 hm5C_associated_SNPs_116560 0 0 0 2 1 UGT8 chr4:115597081 3'AG 115597081 Downstream 97bp
chr1 205549020 205549020 1 + C T COAD 205549019 + 205548999 205549039 41 GGCCATGGGCTGCATCGACACCGTGGCCAACATGCAGCTGG GGCCATGGGCTGCATCGACACTGTGGCCAACATGCAGCTGG < 41bp 0.492221719258096 0.726889558968459 0.2807256 0.11363563 prediction 0.453779117936919 Functional Gain - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205549019 chr1:205549020 synonymous SNV . 0 22 hm5C_associated_SNPs_116562 0 0 0 0 1 MFSD4A chr1:205549077 5'GT 205549077 Upstream 58bp
chr12 126137038 126137038 1 + C T SKCM 126137037 + 126137017 126137057 41 GCTGAGAAGACGGTGATTGTCCTGGATGACCGAGTCACCAT GCTGAGAAGACGGTGATTGTCTTGGATGACCGAGTCACCAT < 41bp 0.556854465245957 0.783743870318595 0.2256827 0.29567513 prediction 0.453778810145276 Functional Gain - TMEM132B ENSG00000139364 CDS Human protein_coding chr12:126137037 chr12:126137038 synonymous SNV . 0 22 hm5C_associated_SNPs_116563 0 0 0 0 1 TMEM132B chr12:126136987 3'AG 126136987 Downstream 52bp
chr13 106124976 106124976 1 + A G COAD 106124973 + 106124953 106124993 41 ACGGCTATTTGGAAATGGCACAGAGGCATTTACAGAGATCA ACGGCTATTTGGAAATGGCACAGGGGCATTTACAGAGATCA < 41bp 0.53873710762809 0.76562603478289 0.41601765 0.7883092 prediction 0.4537778543096 Functional Gain - DAOA ENSG00000182346 CDS Human protein_coding chr13:106124973 chr13:106124976 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_116564 0 0 0 0 2 DAOA chr13:106124887 3'AG 106124887 Downstream 90bp
chr13 106124976 106124976 1 + A G COAD 106124973 + 106124953 106124993 41 ACGGCTATTTGGAAATGGCACAGAGGCATTTACAGAGATCA ACGGCTATTTGGAAATGGCACAGGGGCATTTACAGAGATCA < 41bp 0.53873710762809 0.76562603478289 0.41601765 0.7883092 prediction 0.4537778543096 Functional Gain - DAOA ENSG00000182346 CDS Human protein_coding chr13:106124973 chr13:106124976 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_116564 0 0 0 0 2 DAOA chr13:106124892 3'AG 106124892 Downstream 85bp
chr2 113890293 113890293 1 + C T ESCA 113890292 + 113890272 113890312 41 GACAAGCGCTTCGCCTTCATCCGCTCAGACAGTGGCCCCAC GACAAGCGCTTCGCCTTCATCTGCTCAGACAGTGGCCCCAC < 41bp 0.559955612609608 0.786831453835506 0.1897695 0.1885638 prediction 0.453751682451796 Functional Gain - IL1RN ENSG00000136689 CDS Human protein_coding chr2:113890292 chr2:113890293 nonsynonymous SNV 0.183 3 22 hm5C_associated_SNPs_116569 0 0 0 0 1 IL1RN chr2:113890233 3'AG 113890233 Downstream 61bp
chr1 116519322 116519322 1 + C A PRAD 116519318 + 116519298 116519338 41 AGATGTACTTGTGCTTCCTGCTGGCCGTGCTGCTGCAGGTA AGATGTACTTGTGCTTCCTGCTGGACGTGCTGCTGCAGGTA < 41bp 0.697527518195446 0.924403290067193 0.5042522 0.6761172 prediction 0.453751543743495 Functional Gain - SLC22A15 ENSG00000163393 CDS Human protein_coding chr1:116519318 chr1:116519322 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_116570 0 0 0 0 1 SLC22A15 chr1:116519335 5'GT 116519335 Upstream 14bp
chr2 119750718 119750718 1 + T C LUAD 119750716 + 119750696 119750736 41 CCAGGTGAAAACTCAGTGTCCGTCAGGATTGTCGGCAGTAG CCAGGTGAAAACTCAGTGTCCGCCAGGATTGTCGGCAGTAG < 41bp 0.450564999555941 0.726875459468119 0.3771059 0.3941933 prediction 0.453750918936238 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119750716 chr2:119750718 nonsynonymous SNV 0.047 3 23 hm5C_associated_SNPs_116571 0 0 0 0 1 MARCO chr2:119750700 3'AG 119750700 Downstream 19bp
chr3 30732960 30732960 1 + C T SKCM 30732959 + 30732939 30732979 41 ACTGAGTGCTGGGACCACGACCCAGAGGCCCGTCTCACAGC ACTGAGTGCTGGGACCACGACTCAGAGGCCCGTCTCACAGC < 41bp 0.463916032897495 0.726871995278436 0.05339223 0.03441924 prediction 0.453743990556873 Functional Gain - TGFBR2 ENSG00000163513 CDS Human protein_coding chr3:30732959 chr3:30732960 nonsynonymous SNV 0.894 5 22 hm5C_associated_SNPs_116573 0 0 1 0 1 TGFBR2 chr3:30732912 3'AG 30732912 Downstream 49bp
chr17 12032541 12032541 1 + C T COAD 12032540 + 12032520 12032560 41 AAGTCGTGAAAGGAGATCCTCCGCAGCTGAGTAATTCTGAG AAGTCGTGAAAGGAGATCCTCTGCAGCTGAGTAATTCTGAG < 41bp 0.463836320423806 0.726866164143238 0.042340785 0.13752335 prediction 0.453732328286476 Functional Gain - MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12032540 chr17:12032541 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_116575 0 0 0 0 2 MAP2K4 chr17:12032456 3'AG 12032456 Downstream 86bp
chr17 12032541 12032541 1 + C T COAD 12032540 + 12032520 12032560 41 AAGTCGTGAAAGGAGATCCTCCGCAGCTGAGTAATTCTGAG AAGTCGTGAAAGGAGATCCTCTGCAGCTGAGTAATTCTGAG < 41bp 0.463836320423806 0.726866164143238 0.042340785 0.13752335 prediction 0.453732328286476 Functional Gain - MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12032540 chr17:12032541 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_116575 0 0 0 0 2 MAP2K4 chr17:12032604 5'GT 12032604 Upstream 64bp
chr20 36954747 36954747 1 + C A LUAD 36954746 + 36954726 36954766 41 ACACCTGTCTGTGCAGCCCACCGGCCTTACCTTCTACCCTG ACACCTGTCTGTGCAGCCCACAGGCCTTACCTTCTACCCTG < 41bp 0.595887669486339 0.822745412657136 0.3790811 0.75427675 prediction 0.453715486341595 Functional Gain - BPI ENSG00000101425 CDS Human protein_coding chr20:36954746 chr20:36954747 synonymous SNV . 0 22 hm5C_associated_SNPs_116577 0 0 0 0 2 BPI chr20:36954667 3'AG 36954667 Downstream 81bp
chr20 36954747 36954747 1 + C A LUAD 36954746 + 36954726 36954766 41 ACACCTGTCTGTGCAGCCCACCGGCCTTACCTTCTACCCTG ACACCTGTCTGTGCAGCCCACAGGCCTTACCTTCTACCCTG < 41bp 0.595887669486339 0.822745412657136 0.3790811 0.75427675 prediction 0.453715486341595 Functional Gain - BPI ENSG00000101425 CDS Human protein_coding chr20:36954746 chr20:36954747 synonymous SNV . 0 22 hm5C_associated_SNPs_116577 0 0 0 0 2 BPI chr20:36954834 5'GT 36954834 Upstream 88bp
chr5 176079867 176079867 1 + C T COAD 176079866 + 176079846 176079886 41 AACAACAACGTCAAGGCCTACCGGGACGACATTGACCTCCA AACAACAACGTCAAGGCCTACTGGGACGACATTGACCTCCA < 41bp 0.573538261455069 0.800393580121877 0.20239595 0.32843438 prediction 0.453710637333616 Functional Gain - TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176079866 chr5:176079867 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_116578 0 0 1 0 1 TSPAN17 chr5:176079914 5'GT 176079914 Upstream 48bp
chr12 110012659 110012659 1 + C T SKCM 110012658 + 110012638 110012678 41 AAGTCCTACTGGTGTCTGCTCCGGGGAAAGTCATCCTTCAT AAGTCCTACTGGTGTCTGCTCTGGGGAAAGTCATCCTTCAT < 41bp 0.539559797914908 0.766405729560223 0.9402496 0.8878556 prediction 0.453691863290629 Functional Gain - MVK ENSG00000110921 CDS Human protein_coding chr12:110012658 chr12:110012659 nonsynonymous SNV 0.985 5 22 hm5C_associated_SNPs_116582 1 0 1 0 2 MVK chr12:110012614 3'AG 110012614 Downstream 46bp
chr12 110012659 110012659 1 + C T SKCM 110012658 + 110012638 110012678 41 AAGTCCTACTGGTGTCTGCTCCGGGGAAAGTCATCCTTCAT AAGTCCTACTGGTGTCTGCTCTGGGGAAAGTCATCCTTCAT < 41bp 0.539559797914908 0.766405729560223 0.9402496 0.8878556 prediction 0.453691863290629 Functional Gain - MVK ENSG00000110921 CDS Human protein_coding chr12:110012658 chr12:110012659 nonsynonymous SNV 0.985 5 22 hm5C_associated_SNPs_116582 1 0 1 0 2 MVK chr12:110012705 5'GT 110012705 Upstream 47bp
chr2 131332053 131332053 1 + C T COAD 131332052 + 131332032 131332072 41 ACATCCTCCCCGCCTGCCTTCCGGAACCAACCACGTGGCTG ACATCCTCCCCGCCTGCCTTCTGGAACCAACCACGTGGCTG < 41bp 0.503758605764438 0.730604252758792 0.38187304 0.21613142 prediction 0.453691293988709 Functional Gain - LOC646743;TISP43 ENSG00000183292 CDS Human protein_coding chr2:131332052 chr2:131332053 nonsynonymous SNV 0.000 4 22 hm5C_associated_SNPs_116583 0 0 0 0 1 LOC646743;TISP43 chr2:131332124 5'GT 131332124 Upstream 72bp
chr22 43435856 43435856 1 - G T KIRC 43435860 - 43435840 43435880 41 GCTGACCGGGAGCTGAGAAGCCGTCAGGGTCAGTCTCTGGG GCTGACCGGGAGCTGAGAAGCCGTAAGGGTCAGTCTCTGGG < 41bp 0.321903506051475 0.726844687667813 0.09434864 0.2039645 prediction 0.453689375335626 Functional Gain - TTLL1 ENSG00000100271 CDS Human protein_coding chr22:43435860 chr22:43435856 nonsynonymous SNV 0.011 0 25 hm5C_associated_SNPs_116584 0 0 0 0 1 TTLL1 chr22:43435911 3'AG 43435911 Downstream 56bp
chr6 3225993 3225993 1 - G A rs141251993 3225994 - 3225974 3226014 41 GGGCCACTACACAGAGGGAGCCGAGCTGGTCGACTCGGTCC GGGCCACTACACAGAGGGAGCTGAGCTGGTCGACTCGGTCC < 41bp 0.498261712356959 0.726837117967481 0.83449936 0.67409575 prediction 0.453674235934962 Functional Gain - TUBB2B ENSG00000137285 CDS Human protein_coding chr6:3225994 chr6:3225993 synonymous SNV . 0 22 hm5C_associated_SNPs_116587 1 0 0 0 1 TUBB2B chr6:3226045 3'AG 3226045 Downstream 53bp
chr10 103919720 103919720 1 + C A LIHC 103919716 + 103919696 103919736 41 GAAGTCTCTGGGAACCCAGCCTCCCAAGAAGGCTGTGGAGA GAAGTCTCTGGGAACCCAGCCTCCAAAGAAGGCTGTGGAGA < 41bp 0.271713553739517 0.726822602011847 0.26116523 0.9571516 prediction 0.453645204023694 Functional Gain - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919716 chr10:103919720 synonymous SNV . 0 25 hm5C_associated_SNPs_116591 0 0 1 0 2 NOLC1 chr10:103919653 3'AG 103919653 Downstream 68bp
chr10 103919720 103919720 1 + C A LIHC 103919716 + 103919696 103919736 41 GAAGTCTCTGGGAACCCAGCCTCCCAAGAAGGCTGTGGAGA GAAGTCTCTGGGAACCCAGCCTCCAAAGAAGGCTGTGGAGA < 41bp 0.271713553739517 0.726822602011847 0.26116523 0.9571516 prediction 0.453645204023694 Functional Gain - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919716 chr10:103919720 synonymous SNV . 0 25 hm5C_associated_SNPs_116591 0 0 1 0 2 NOLC1 chr10:103919781 5'GT 103919781 Upstream 62bp
chr11 55652971 55652971 1 + C A rs2063277 55652967 + 55652947 55652987 41 TGTCCCATCTGCATGAACTACTTCCTAGACCCAGTCACCAT TGTCCCATCTGCATGAACTACTTCATAGACCCAGTCACCAT < 41bp 0.297012028011591 0.726821771409861 0.033329934 0.14981133 prediction 0.453643542819723 Functional Gain - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55652967 chr11:55652971 nonsynonymous SNV 0.123 0 25 hm5C_associated_SNPs_116592 0 0 0 0 1 TRIM51 chr11:55652901 3'AG 55652901 Downstream 71bp
chr17 33495162 33495162 1 + C G LIHC 33495161 + 33495141 33495181 41 ATCCTGCAGGGCCCCTTTGACCTGGGCAACCAGCTGCTGGG ATCCTGCAGGGCCCCTTTGACGTGGGCAACCAGCTGCTGGG < 41bp 0.403099106159043 0.726819531576679 0.8975791 0.9336017 prediction 0.453639063153358 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33495161 chr17:33495162 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_116595 0 0 0 0 1 UNC45B chr17:33495080 3'AG 33495080 Downstream 83bp
chr5 1214090 1214090 1 + A G ACC 1214087 + 1214067 1214107 41 GGTCACGGAGCTGGCCCAGCCGGACACCTGGCTGGACGCGG GGTCACGGAGCTGGCCCAGCCGGGCACCTGGCTGGACGCGG < 41bp 0.553739523085574 0.780556111297933 0.45669955 0.8648132 prediction 0.453633176424718 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1214087 chr5:1214090 nonsynonymous SNV 0.920 0 24 hm5C_associated_SNPs_116596 0 0 0 0 2 SLC6A19 chr5:1214068 3'AG 1214068 Downstream 23bp
chr5 1214090 1214090 1 + A G ACC 1214087 + 1214067 1214107 41 GGTCACGGAGCTGGCCCAGCCGGACACCTGGCTGGACGCGG GGTCACGGAGCTGGCCCAGCCGGGCACCTGGCTGGACGCGG < 41bp 0.553739523085574 0.780556111297933 0.45669955 0.8648132 prediction 0.453633176424718 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1214087 chr5:1214090 nonsynonymous SNV 0.920 0 24 hm5C_associated_SNPs_116596 0 0 0 0 2 SLC6A19 chr5:1214180 5'GT 1214180 Upstream 91bp
chr1 162557312 162557312 1 + A G HNSC 162557309 + 162557289 162557329 41 GAACCAGTTGGAGTGGTTTGCCGAGTGGATGGAGTTTACCA GAACCAGTTGGAGTGGTTTGCCGGGTGGATGGAGTTTACCA < 41bp 0.514335473456881 0.741146347235555 0.8821968 0.90737426 prediction 0.453621747557349 Functional Gain - UAP1 ENSG00000117143 CDS Human protein_coding chr1:162557309 chr1:162557312 synonymous SNV . 0 24 hm5C_associated_SNPs_116597 0 0 1 0 1 UAP1 chr1:162557265 3'AG 162557265 Downstream 48bp
chr16 67575651 67575651 1 + C T COAD 67575650 + 67575630 67575670 41 CCACCTATAGCCAGAGCCCACCGGACACACCCTCACTTCGG CCACCTATAGCCAGAGCCCACTGGACACACCCTCACTTCGG < 41bp 0.582574814966142 0.80936022503496 0.88787395 0.8103118 prediction 0.453570820137636 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67575650 chr16:67575651 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_116604 0 0 1 0 2 RIPOR1 chr16:67575556 3'AG 67575556 Downstream 96bp
chr16 67575651 67575651 1 + C T COAD 67575650 + 67575630 67575670 41 CCACCTATAGCCAGAGCCCACCGGACACACCCTCACTTCGG CCACCTATAGCCAGAGCCCACTGGACACACCCTCACTTCGG < 41bp 0.582574814966142 0.80936022503496 0.88787395 0.8103118 prediction 0.453570820137636 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67575650 chr16:67575651 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_116604 0 0 1 0 2 RIPOR1 chr16:67575685 5'GT 67575685 Upstream 35bp
chrX 49030736 49030736 1 + C T BLCA 49030735 + 49030715 49030755 41 TATGATGCCTATGTCACCTTCCCCGTTCGGCAGCCAAGACA TATGATGCCTATGTCACCTTCTCCGTTCGGCAGCCAAGACA < 41bp 0.452721300068451 0.726762767266786 0.07226804 0.28513703 prediction 0.453525534533572 Functional Gain - PLP2 ENSG00000102007 CDS Human protein_coding chrX:49030735 chrX:49030736 nonsynonymous SNV 0.314 3 22 hm5C_associated_SNPs_116610 0 0 1 0 2 PLP2 chrX:49030682 3'AG 49030682 Downstream 55bp
chrX 49030736 49030736 1 + C T BLCA 49030735 + 49030715 49030755 41 TATGATGCCTATGTCACCTTCCCCGTTCGGCAGCCAAGACA TATGATGCCTATGTCACCTTCTCCGTTCGGCAGCCAAGACA < 41bp 0.452721300068451 0.726762767266786 0.07226804 0.28513703 prediction 0.453525534533572 Functional Gain - PLP2 ENSG00000102007 CDS Human protein_coding chrX:49030735 chrX:49030736 nonsynonymous SNV 0.314 3 22 hm5C_associated_SNPs_116610 0 0 1 0 2 PLP2 chrX:49030772 5'GT 49030772 Upstream 37bp
chr19 49261200 49261200 1 + C A UCEC 49261199 + 49261179 49261219 41 TCCCCTAGCTCCACTTTGACCCTGAGGCCTGCAGCTTCCGG TCCCCTAGCTCCACTTTGACCATGAGGCCTGCAGCTTCCGG < 41bp 0.455907617440305 0.726759426947491 0.15303537 0.27582112 prediction 0.453518853894981 Functional Gain - FGF21 ENSG00000105550 CDS Human protein_coding chr19:49261199 chr19:49261200 nonsynonymous SNV 0.636 3 22 hm5C_associated_SNPs_116612 0 0 0 0 1 FGF21 chr19:49261187 3'AG 49261187 Downstream 14bp
chr2 220366687 220366687 1 + C T COAD 220366686 + 220366666 220366706 41 GCTCAATGCTGATGTCTGCTCCGACTTCCCCTTGAGTGCTA GCTCAATGCTGATGTCTGCTCTGACTTCCCCTTGAGTGCTA < 41bp 0.542420962278922 0.769178288968739 0.06307006 0.067040265 prediction 0.453514653379634 Functional Gain - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220366686 chr2:220366687 synonymous SNV . 0 22 hm5C_associated_SNPs_116613 0 0 1 0 1 GMPPA chr2:220366759 5'GT 220366759 Upstream 73bp
chr1 38489261 38489261 1 + C T SKCM 38489260 + 38489240 38489280 41 GAAGAAAGAAACGGTGAACTCCCCAGCTATTTATAAATTTC GAAGAAAGAAACGGTGAACTCTCCAGCTATTTATAAATTTC < 41bp 0.576221906836778 0.802977577611614 0.39497626 0.9491817 prediction 0.453511341549671 Functional Gain - UTP11 ENSG00000183520 CDS Human protein_coding chr1:38489260 chr1:38489261 synonymous SNV . 0 22 hm5C_associated_SNPs_116614 0 0 1 0 1 UTP11 chr1:38489217 3'AG 38489217 Downstream 45bp
chr4 7026910 7026910 1 + C T SKCM 7026909 + 7026889 7026929 41 CCCAGTTCCTGACCCGGCTGCCCGAGGACCTGCCCGCCGAG CCCAGTTCCTGACCCGGCTGCTCGAGGACCTGCCCGCCGAG < 41bp 0.605612258632222 0.832367824930347 0.3963006 0.4232684 prediction 0.45351113259625 Functional Gain - TBC1D14 ENSG00000132405 CDS Human protein_coding chr4:7026909 chr4:7026910 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_116615 0 0 1 0 1 TBC1D14 chr4:7026989 5'GT 7026989 Upstream 80bp
chr10 104486433 104486433 1 + C A LIHC 104486429 + 104486409 104486449 41 TCTGGCTTTAACATCGATGCCCCCCGTTGGGACCAGCGCAC TCTGGCTTTAACATCGATGCCCCCAGTTGGGACCAGCGCAC < 41bp 0.292204610742444 0.72675397251888 0.02958408 0.07568264 prediction 0.45350794503776 Functional Gain - SFXN2 ENSG00000156398 CDS Human protein_coding chr10:104486429 chr10:104486433 nonsynonymous SNV 0.923 2 25 hm5C_associated_SNPs_116616 0 0 0 0 1 SFXN2 chr10:104486369 3'AG 104486369 Downstream 65bp
chr9 75431120 75431120 1 + T C ESCA 75431118 + 75431098 75431138 41 GCTCTGATCTTCAACCAAGGCATGATCTGGTAGGCCAGCTG GCTCTGATCTTCAACCAAGGCACGATCTGGTAGGCCAGCTG < 41bp 0.618748914965841 0.845500377084931 0.15246254 0.15614921 prediction 0.453502924238181 Functional Gain - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75431118 chr9:75431120 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_116617 0 0 0 1 2 TMC1 chr9:75431059 3'AG 75431059 Downstream 62bp
chr9 75431120 75431120 1 + T C ESCA 75431118 + 75431098 75431138 41 GCTCTGATCTTCAACCAAGGCATGATCTGGTAGGCCAGCTG GCTCTGATCTTCAACCAAGGCACGATCTGGTAGGCCAGCTG < 41bp 0.618748914965841 0.845500377084931 0.15246254 0.15614921 prediction 0.453502924238181 Functional Gain - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75431118 chr9:75431120 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_116617 0 0 0 1 2 TMC1 chr9:75431126 5'GT 75431126 Upstream 7bp
chr12 113533149 113533149 1 + C A LUAD 113533148 + 113533128 113533168 41 AGGGCCCTGAGCACCCCAACCCCGGGAAGAAGTTCACCGCA AGGGCCCTGAGCACCCCAACCACGGGAAGAAGTTCACCGCA < 41bp 0.589023985892781 0.815771147172261 0.42664093 0.7656091 prediction 0.453494322558961 Functional Gain - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113533148 chr12:113533149 nonsynonymous SNV 0.960 4 22 hm5C_associated_SNPs_116621 0 0 0 0 2 DTX1 chr12:113533130 3'AG 113533130 Downstream 20bp
chr12 113533149 113533149 1 + C A LUAD 113533148 + 113533128 113533168 41 AGGGCCCTGAGCACCCCAACCCCGGGAAGAAGTTCACCGCA AGGGCCCTGAGCACCCCAACCACGGGAAGAAGTTCACCGCA < 41bp 0.589023985892781 0.815771147172261 0.42664093 0.7656091 prediction 0.453494322558961 Functional Gain - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113533148 chr12:113533149 nonsynonymous SNV 0.960 4 22 hm5C_associated_SNPs_116621 0 0 0 0 2 DTX1 chr12:113533219 5'GT 113533219 Upstream 71bp
chr6 55216344 55216344 1 + A G rs146300118 55216341 + 55216321 55216361 41 TGGTTCCACCCCCTACTTGCCTCAGTGTAATTCGCAGCTGC TGGTTCCACCCCCTACTTGCCTCGGTGTAATTCGCAGCTGC < 41bp 0.530536971369848 0.757279727733795 0.1147182 0.17656326 prediction 0.453485512727895 Functional Gain - GFRAL ENSG00000187871 CDS Human protein_coding chr6:55216341 chr6:55216344 nonsynonymous SNV 0.893 0 24 hm5C_associated_SNPs_116623 0 0 0 0 1 GFRAL chr6:55216381 5'GT 55216381 Upstream 38bp
chr20 36936026 36936026 1 + A G LUAD 36936023 + 36936003 36936043 41 GCTGAAGAGGATCAAGATTCCTGACTACTCAGACAGCTTTA GCTGAAGAGGATCAAGATTCCTGGCTACTCAGACAGCTTTA < 41bp 0.560276913658256 0.787012738367738 0.120470285 0.41787001 prediction 0.453471649418964 Functional Gain - BPI ENSG00000101425 CDS Human protein_coding chr20:36936023 chr20:36936026 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_116626 0 0 0 0 2 BPI chr20:36935969 3'AG 36935969 Downstream 58bp
chr20 36936026 36936026 1 + A G LUAD 36936023 + 36936003 36936043 41 GCTGAAGAGGATCAAGATTCCTGACTACTCAGACAGCTTTA GCTGAAGAGGATCAAGATTCCTGGCTACTCAGACAGCTTTA < 41bp 0.560276913658256 0.787012738367738 0.120470285 0.41787001 prediction 0.453471649418964 Functional Gain - BPI ENSG00000101425 CDS Human protein_coding chr20:36936023 chr20:36936026 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_116626 0 0 0 0 2 BPI chr20:36936083 5'GT 36936083 Upstream 58bp
chr6 43623368 43623368 1 + C A THYM 43623367 + 43623347 43623387 41 GACAAGGCTGTGGCCATCATCCCCCGAGGCGCCCTCTTCAA GACAAGGCTGTGGCCATCATCACCCGAGGCGCCCTCTTCAA < 41bp 0.464581941619066 0.726734934513866 0.12588122 0.24244294 prediction 0.453469869027732 Functional Gain - RSPH9 ENSG00000172426 CDS Human protein_coding chr6:43623367 chr6:43623368 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_116627 0 0 0 0 3 RSPH9 chr6:43623299 3'AG 43623299 Downstream 70bp
chr6 43623368 43623368 1 + C A THYM 43623367 + 43623347 43623387 41 GACAAGGCTGTGGCCATCATCCCCCGAGGCGCCCTCTTCAA GACAAGGCTGTGGCCATCATCACCCGAGGCGCCCTCTTCAA < 41bp 0.464581941619066 0.726734934513866 0.12588122 0.24244294 prediction 0.453469869027732 Functional Gain - RSPH9 ENSG00000172426 CDS Human protein_coding chr6:43623367 chr6:43623368 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_116627 0 0 0 0 3 RSPH9 chr6:43623344 3'AG 43623344 Downstream 25bp
chr6 43623368 43623368 1 + C A THYM 43623367 + 43623347 43623387 41 GACAAGGCTGTGGCCATCATCCCCCGAGGCGCCCTCTTCAA GACAAGGCTGTGGCCATCATCACCCGAGGCGCCCTCTTCAA < 41bp 0.464581941619066 0.726734934513866 0.12588122 0.24244294 prediction 0.453469869027732 Functional Gain - RSPH9 ENSG00000172426 CDS Human protein_coding chr6:43623367 chr6:43623368 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_116627 0 0 0 0 3 RSPH9 chr6:43623428 5'GT 43623428 Upstream 61bp
chr9 131369952 131369952 1 + C T STAD 131369951 + 131369931 131369971 41 TGAGCTAGCCAAGGATGTCACCGGAGCTGAGGCATTGCTGG TGAGCTAGCCAAGGATGTCACTGGAGCTGAGGCATTGCTGG < 41bp 0.493167607423491 0.726733283330529 0.8715929 0.4497191 prediction 0.453466566661058 Functional Gain - SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131369951 chr9:131369952 synonymous SNV . 0 22 hm5C_associated_SNPs_116628 2 0 1 0 2 SPTAN1 chr9:131369883 3'AG 131369883 Downstream 70bp
chr9 131369952 131369952 1 + C T STAD 131369951 + 131369931 131369971 41 TGAGCTAGCCAAGGATGTCACCGGAGCTGAGGCATTGCTGG TGAGCTAGCCAAGGATGTCACTGGAGCTGAGGCATTGCTGG < 41bp 0.493167607423491 0.726733283330529 0.8715929 0.4497191 prediction 0.453466566661058 Functional Gain - SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131369951 chr9:131369952 synonymous SNV . 0 22 hm5C_associated_SNPs_116628 2 0 1 0 2 SPTAN1 chr9:131369982 5'GT 131369982 Upstream 31bp
chr3 50222878 50222878 1 + C T UCEC 50222877 + 50222857 50222897 41 CCTGCCCGGCCCGTTCCAGACCGCGGGACAGTGCAGAAGGT CCTGCCCGGCCCGTTCCAGACTGCGGGACAGTGCAGAAGGT < 41bp 0.466859869307089 0.726729533647657 0.8148823 0.55124223 prediction 0.453459067295314 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50222877 chr3:50222878 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_116630 0 0 0 0 2 SEMA3F chr3:50222876 3'AG 50222876 Downstream 3bp
chr3 50222878 50222878 1 + C T UCEC 50222877 + 50222857 50222897 41 CCTGCCCGGCCCGTTCCAGACCGCGGGACAGTGCAGAAGGT CCTGCCCGGCCCGTTCCAGACTGCGGGACAGTGCAGAAGGT < 41bp 0.466859869307089 0.726729533647657 0.8148823 0.55124223 prediction 0.453459067295314 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50222877 chr3:50222878 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_116630 0 0 0 0 2 SEMA3F chr3:50222964 5'GT 50222964 Upstream 87bp
chr21 43711754 43711754 1 + C T rs139750767 43711753 + 43711733 43711773 41 CCTGCTGATCGGAGCCGCCTCCACGTCCCTGCAGGTGCCAG CCTGCTGATCGGAGCCGCCTCTACGTCCCTGCAGGTGCCAG < 41bp 0.475198468861715 0.726716745211222 0.8973382 0.6166903 prediction 0.453433490422444 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43711753 chr21:43711754 synonymous SNV . 0 22 hm5C_associated_SNPs_116634 0 0 0 0 1 ABCG1 chr21:43711766 5'GT 43711766 Upstream 13bp
chr1 11771915 11771915 1 + A G LIHC 11771912 + 11771892 11771932 41 TCTCCACGGTCTCCAGCAGGCACAGCCCAGGTCTGACGGGG TCTCCACGGTCTCCAGCAGGCACGGCCCAGGTCTGACGGGG < 41bp 0.538598149827475 0.765313548384657 0.19032666 0.18129703 prediction 0.453430797114364 Functional Gain - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11771912 chr1:11771915 nonsynonymous SNV 0.965 0 24 hm5C_associated_SNPs_116635 0 0 0 0 1 DRAXIN chr1:11771908 3'AG 11771908 Downstream 8bp
chr9 139818418 139818418 1 + A G UCEC 139818415 + 139818395 139818435 41 CTTTGTGGTGATGAAGGGCCCGAATGACGCCCTGCTGCGGT CTTTGTGGTGATGAAGGGCCCGAGTGACGCCCTGCTGCGGT < 41bp 0.553671230938674 0.780384380949141 0.096841365 0.47617847 prediction 0.453426300020934 Functional Gain - TRAF2 ENSG00000127191 CDS Human protein_coding chr9:139818415 chr9:139818418 nonsynonymous SNV 0.371 1 24 hm5C_associated_SNPs_116636 0 0 1 0 1 TRAF2 chr9:139818452 5'GT 139818452 Upstream 35bp
chrX 41554971 41554971 1 + C G LUAD 41554967 + 41554947 41554987 41 CACAGAATGCGCTTTATAACCAATCATAGCGACCAACCGCC CACAGAATGCGCTTTATAACCAATGATAGCGACCAACCGCC < 41bp 0.430005286302854 0.726697747676484 0.122378916 0.50788593 prediction 0.453395495352968 Functional Gain - GPR34 ENSG00000171659 CDS Human protein_coding chrX:41554967 chrX:41554971 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_116642 0 0 0 0 1 GPR34 chrX:41554881 3'AG 41554881 Downstream 91bp
chr6 161139848 161139848 1 + C T SKCM 161139847 + 161139827 161139867 41 CTGTGACTCCTCCCCAGTATCCACGGAACAATTGGCTCCCA CTGTGACTCCTCCCCAGTATCTACGGAACAATTGGCTCCCA < 41bp 0.56863143659597 0.795325102088407 0.8429861 0.72803926 prediction 0.453387330984875 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161139847 chr6:161139848 synonymous SNV . 0 22 hm5C_associated_SNPs_116644 0 0 0 0 1 PLG chr6:161139870 5'GT 161139870 Upstream 23bp
chr1 17668802 17668802 1 + C T UCEC 17668801 + 17668781 17668821 41 CCCTCCCCTGCAGGAGCTCCCCGAGGCTGTGGTGTTCCAAG CCCTCCCCTGCAGGAGCTCCCTGAGGCTGTGGTGTTCCAAG < 41bp 0.512241548106442 0.738934920281945 0.70702815 0.20009539 prediction 0.453386744351005 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17668801 chr1:17668802 synonymous SNV . 0 22 hm5C_associated_SNPs_116645 0 0 0 0 2 PADI4 chr1:17668794 3'AG 17668794 Downstream 9bp
chr1 17668802 17668802 1 + C T UCEC 17668801 + 17668781 17668821 41 CCCTCCCCTGCAGGAGCTCCCCGAGGCTGTGGTGTTCCAAG CCCTCCCCTGCAGGAGCTCCCTGAGGCTGTGGTGTTCCAAG < 41bp 0.512241548106442 0.738934920281945 0.70702815 0.20009539 prediction 0.453386744351005 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17668801 chr1:17668802 synonymous SNV . 0 22 hm5C_associated_SNPs_116645 0 0 0 0 2 PADI4 chr1:17668897 5'GT 17668897 Upstream 96bp
chr1 116929941 116929941 1 + T C UCEC 116929939 + 116929919 116929959 41 TCTGCTCGTGCAGCTGAGATCCTGGCGCGAGATGGTCCCAA TCTGCTCGTGCAGCTGAGATCCCGGCGCGAGATGGTCCCAA < 41bp 0.456778081266256 0.726680639774015 0.65169543 0.8538655 prediction 0.453361279548031 Functional Gain - ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116929939 chr1:116929941 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_116649 0 0 1 0 1 ATP1A1 chr1:116929910 3'AG 116929910 Downstream 32bp
chr7 6057485 6057485 1 + C T COAD 6057484 + 6057464 6057504 41 ACATCGTGATCAACGCAAACCCGGCCTCCCCTCCCCTCTCC ACATCGTGATCAACGCAAACCTGGCCTCCCCTCCCCTCTCC < 41bp 0.559423713389431 0.786102363045326 0.07978922 0.08221927 prediction 0.45335729931179 Functional Gain - AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6057484 chr7:6057485 nonsynonymous SNV 0.948 4 22 hm5C_associated_SNPs_116650 0 0 1 0 1 AIMP2 chr7:6057445 3'AG 6057445 Downstream 41bp
chr6 118635280 118635280 1 + C A LUAD 118635279 + 118635259 118635299 41 CACCTACATAGCCCAGGACCCCCGAGTGTATAAGCAGTTCC CACCTACATAGCCCAGGACCCACGAGTGTATAAGCAGTTCC < 41bp 0.54373159664198 0.770400627770373 0.085989386 0.08159554 prediction 0.453338062256786 Functional Gain - SLC35F1 ENSG00000196376 CDS Human protein_coding chr6:118635279 chr6:118635280 synonymous SNV . 0 22 hm5C_associated_SNPs_116651 0 0 1 0 1 SLC35F1 chr6:118635191 3'AG 118635191 Downstream 90bp
chr10 45480374 45480374 1 + C T CESC 45480373 + 45480353 45480393 41 CCCGGTGAGGCCCAGCGCATCCGGCGACACCGGTTCTCTAT CCCGGTGAGGCCCAGCGCATCTGGCGACACCGGTTCTCTAT < 41bp 0.567404738275468 0.794071183468932 0.9087516 0.58914953 prediction 0.453332890386927 Functional Gain - RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45480373 chr10:45480374 nonsynonymous SNV 0.892 3 22 hm5C_associated_SNPs_116652 0 0 1 0 1 RASSF4 chr10:45480418 5'GT 45480418 Upstream 45bp
chr1 22970532 22970532 1 + A G UCEC 22970529 + 22970509 22970549 41 TCTCCGGGATGGACGTGGGGCCCAGCTCCCTGCCCCACCTT TCTCCGGGATGGACGTGGGGCCCGGCTCCCTGCCCCACCTT < 41bp 0.554614394252079 0.781280496455601 0.25744885 0.3605503 prediction 0.453332204407045 Functional Gain - C1QC ENSG00000159189 CDS Human protein_coding chr1:22970529 chr1:22970532 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_116653 0 0 0 0 1 C1QC chr1:22970504 3'AG 22970504 Downstream 29bp
chr1 168014205 168014205 1 + T C COAD 168014203 + 168014183 168014223 41 GAGAAAGAAATGACCTCAATCTTGATCGCTCTTGTGGGGTT GAGAAAGAAATGACCTCAATCTCGATCGCTCTTGTGGGGTT < 41bp 0.646837384166147 0.873502729120486 0.12174696 0.31239927 prediction 0.453330689908677 Functional Gain - DCAF6 ENSG00000143164 CDS Human protein_coding chr1:168014203 chr1:168014205 synonymous SNV . 0 23 hm5C_associated_SNPs_116654 0 0 1 0 1 DCAF6 chr1:168014138 3'AG 168014138 Downstream 68bp
chr19 51986344 51986344 1 + C T SKCM 51986343 + 51986323 51986363 41 TGTGACAGCTGAGATCGGCTCCCAAGTGGAAATGGAGTGTA TGTGACAGCTGAGATCGGCTCTCAAGTGGAAATGGAGTGTA < 41bp 0.558331995568469 0.784996094237524 0.14044431 0.12036571 prediction 0.453328197338111 Functional Gain - CEACAM18 ENSG00000213822 CDS Human protein_coding chr19:51986343 chr19:51986344 synonymous SNV . 0 22 hm5C_associated_SNPs_116656 0 0 0 0 1 CEACAM18 chr19:51986271 3'AG 51986271 Downstream 74bp
chr22 50961504 50961504 1 + C T LUAD 50961503 + 50961483 50961523 41 ACCAGCTGGTCTCACGGTTCCCCCAGCTCAATGAGTGGTGT ACCAGCTGGTCTCACGGTTCCTCCAGCTCAATGAGTGGTGT < 41bp 0.452946564513661 0.726661607272068 0.08159155 0.91493523 prediction 0.453323214544135 Functional Gain - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50961503 chr22:50961504 nonsynonymous SNV 0.167 0 22 hm5C_associated_SNPs_116657 0 0 1 0 2 NCAPH2 chr22:50961446 3'AG 50961446 Downstream 59bp
chr22 50961504 50961504 1 + C T LUAD 50961503 + 50961483 50961523 41 ACCAGCTGGTCTCACGGTTCCCCCAGCTCAATGAGTGGTGT ACCAGCTGGTCTCACGGTTCCTCCAGCTCAATGAGTGGTGT < 41bp 0.452946564513661 0.726661607272068 0.08159155 0.91493523 prediction 0.453323214544135 Functional Gain - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50961503 chr22:50961504 nonsynonymous SNV 0.167 0 22 hm5C_associated_SNPs_116657 0 0 1 0 2 NCAPH2 chr22:50961595 5'GT 50961595 Upstream 92bp
chr12 71974201 71974201 1 + A G STAD 71974198 + 71974178 71974218 41 AGATGCTGGAATGTTTCAGGCTCAAGGTAGGACTTGCTATG AGATGCTGGAATGTTTCAGGCTCGAGGTAGGACTTGCTATG < 41bp 0.490387760963832 0.72666116594731 0.21651462 0.19653398 prediction 0.453322331894619 Functional Gain - LGR5 ENSG00000139292 CDS Human protein_coding chr12:71974198 chr12:71974201 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_116658 0 0 1 0 1 LGR5 chr12:71974203 5'GT 71974203 Upstream 3bp
chr2 47637443 47637443 1 + C T LUAD 47637442 + 47637422 47637462 41 AATCTTGAGGCTCTCCTCATCCAGATTGGACCAAAGGAATG AATCTTGAGGCTCTCCTCATCTAGATTGGACCAAAGGAATG < 41bp 0.566891539713012 0.793549002498714 0.28355566 0.26504588 prediction 0.453314925571405 Functional Gain - MSH2 ENSG00000095002 CDS Human protein_coding chr2:47637442 chr2:47637443 stopgain 1.000 1 22 hm5C_associated_SNPs_116661 2 0 1 0 1 MSH2 chr2:47637511 5'GT 47637511 Upstream 69bp
chr9 71094429 71094429 1 + C T COAD 71094428 + 71094408 71094448 41 CAGAGTGTGGAGGAAATTGTCCGAGATCACTGGGCCAAATT CAGAGTGTGGAGGAAATTGTCTGAGATCACTGGGCCAAATT < 41bp 0.5562500811233 0.782897163143884 0.48234043 0.3063612 prediction 0.453294164041168 Functional Gain - PGM5 ENSG00000154330 CDS Human protein_coding chr9:71094428 chr9:71094429 stopgain 0.989 1 22 hm5C_associated_SNPs_116664 0 0 0 0 2 PGM5 chr9:71094334 3'AG 71094334 Downstream 96bp
chr9 71094429 71094429 1 + C T COAD 71094428 + 71094408 71094448 41 CAGAGTGTGGAGGAAATTGTCCGAGATCACTGGGCCAAATT CAGAGTGTGGAGGAAATTGTCTGAGATCACTGGGCCAAATT < 41bp 0.5562500811233 0.782897163143884 0.48234043 0.3063612 prediction 0.453294164041168 Functional Gain - PGM5 ENSG00000154330 CDS Human protein_coding chr9:71094428 chr9:71094429 stopgain 0.989 1 22 hm5C_associated_SNPs_116664 0 0 0 0 2 PGM5 chr9:71094469 5'GT 71094469 Upstream 41bp
chr17 4348402 4348402 1 + T C COAD 4348400 + 4348380 4348420 41 CGACATAGCCGCAAGGCTACCATGAGCTTCGGTATCTTGCT CGACATAGCCGCAAGGCTACCACGAGCTTCGGTATCTTGCT < 41bp 0.588610327831237 0.815256553338533 0.41950718 0.6743893 prediction 0.453292451014593 Functional Gain - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4348400 chr17:4348402 nonsynonymous SNV 0.358 2 23 hm5C_associated_SNPs_116666 0 0 0 0 2 SPNS3 chr17:4348327 3'AG 4348327 Downstream 76bp
chr17 4348402 4348402 1 + T C COAD 4348400 + 4348380 4348420 41 CGACATAGCCGCAAGGCTACCATGAGCTTCGGTATCTTGCT CGACATAGCCGCAAGGCTACCACGAGCTTCGGTATCTTGCT < 41bp 0.588610327831237 0.815256553338533 0.41950718 0.6743893 prediction 0.453292451014593 Functional Gain - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4348400 chr17:4348402 nonsynonymous SNV 0.358 2 23 hm5C_associated_SNPs_116666 0 0 0 0 2 SPNS3 chr17:4348463 5'GT 4348463 Upstream 62bp
chr16 72055148 72055148 1 + C T SKCM 72055147 + 72055127 72055167 41 CTGGTGGTGAATGTGTCCAGCCCCAACACTGCCGGGCTGCG CTGGTGGTGAATGTGTCCAGCTCCAACACTGCCGGGCTGCG < 41bp 0.45030927528173 0.726644700630879 0.19449443 0.8958659 prediction 0.453289401261758 Functional Gain - DHODH ENSG00000102967 CDS Human protein_coding chr16:72055147 chr16:72055148 nonsynonymous SNV 0.995 5 22 hm5C_associated_SNPs_116667 0 0 0 0 1 DHODH chr16:72055210 5'GT 72055210 Upstream 63bp
chr10 99211511 99211511 1 + C T LUAD 99211510 + 99211490 99211530 41 CTGCTGCTGGGTTACAGGCGCCGCTGTCCACCTCTACTCCG CTGCTGCTGGGTTACAGGCGCTGCTGTCCACCTCTACTCCG < 41bp 0.535086280935567 0.76172731219591 0.23251733 0.16534904 prediction 0.453282062520686 Functional Gain - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99211510 chr10:99211511 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_116669 0 0 1 0 1 ZDHHC16 chr10:99211428 3'AG 99211428 Downstream 84bp
chrX 152100265 152100265 1 + C T SKCM 152100264 + 152100244 152100284 41 GCCCCCTGCTCCAGAGAGCTCCAGAGGGACTTGGCTGGTGA GCCCCCTGCTCCAGAGAGCTCTAGAGGGACTTGGCTGGTGA < 41bp 0.555136101777242 0.781774061118281 0.9023185 0.5762559 prediction 0.453275918682078 Functional Gain - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152100264 chrX:152100265 stopgain 0.001 0 22 hm5C_associated_SNPs_116674 0 0 0 0 2 ZNF185 chrX:152100216 3'AG 152100216 Downstream 50bp
chrX 152100265 152100265 1 + C T SKCM 152100264 + 152100244 152100284 41 GCCCCCTGCTCCAGAGAGCTCCAGAGGGACTTGGCTGGTGA GCCCCCTGCTCCAGAGAGCTCTAGAGGGACTTGGCTGGTGA < 41bp 0.555136101777242 0.781774061118281 0.9023185 0.5762559 prediction 0.453275918682078 Functional Gain - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152100264 chrX:152100265 stopgain 0.001 0 22 hm5C_associated_SNPs_116674 0 0 0 0 2 ZNF185 chrX:152100320 5'GT 152100320 Upstream 56bp
chr1 42865086 42865086 1 + A G SKCM 42865083 + 42865063 42865103 41 CTTGAATTGCAGGCCTCCAGCTAAACCAGAAGGCCCTCACC CTTGAATTGCAGGCCTCCAGCTAGACCAGAAGGCCCTCACC < 41bp 0.541805334805526 0.768441948978603 0.52293015 0.40219533 prediction 0.453273228346154 Functional Gain - RIMKLA ENSG00000177181 CDS Human protein_coding chr1:42865083 chr1:42865086 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_116675 0 0 1 0 1 RIMKLA chr1:42865075 3'AG 42865075 Downstream 12bp
chr15 40565079 40565079 1 + C A rs201655600 40565075 + 40565055 40565095 41 GCCTGCCCCCAGGTGGTGATCATGCGGGACTACCAGCACTT GCCTGCCCCCAGGTGGTGATCATGAGGGACTACCAGCACTT < 41bp 0.326542041380624 0.726635053782299 0.8920475 0.9091149 prediction 0.453270107564597 Functional Gain - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40565075 chr15:40565079 synonymous SNV . 0 25 hm5C_associated_SNPs_116676 0 0 0 0 1 BUB1B-PAK6;PAK6 chr15:40565067 3'AG 40565067 Downstream 13bp
chr20 36031660 36031660 1 + C A COAD 36031656 + 36031636 36031676 41 GAGTGTCCCGAGTCCCTGCACGACCTCATGTGCCAGTGCTG GAGTGTCCCGAGTCCCTGCACGACATCATGTGCCAGTGCTG < 41bp 0.326844916120592 0.726617893780455 0.058363885 0.05419612 prediction 0.453235787560911 Functional Gain - SRC ENSG00000197122 CDS Human protein_coding chr20:36031656 chr20:36031660 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_116682 0 0 1 0 1 SRC chr20:36031574 3'AG 36031574 Downstream 87bp
chr1 48697711 48697711 1 + C A LUAD 48697707 + 48697687 48697727 41 TCCCCAACACCACCTGTCACCTCCCACGGCCCGATGCTTTC TCCCCAACACCACCTGTCACCTCCAACGGCCCGATGCTTTC < 41bp 0.393860275947446 0.726597262752502 0.004352838 0.9653044 prediction 0.453194525505005 Functional Gain - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48697707 chr1:48697711 nonsynonymous SNV 0.948 5 25 hm5C_associated_SNPs_116686 0 0 0 0 1 SLC5A9 chr1:48697618 3'AG 48697618 Downstream 94bp
chr19 13051444 13051444 1 + A G UCEC 13051441 + 13051421 13051461 41 ATGGACGGAGAGTGGGAACCCCCAGTGATTCAGAACCCTGA ATGGACGGAGAGTGGGAACCCCCGGTGATTCAGAACCCTGA < 41bp 0.536991871924494 0.763583452448135 0.58060884 0.5701711 prediction 0.453183161047281 Functional Gain - CALR ENSG00000179218 CDS Human protein_coding chr19:13051441 chr19:13051444 synonymous SNV . 0 24 hm5C_associated_SNPs_116690 0 0 1 0 2 CALR chr19:13051355 3'AG 13051355 Downstream 90bp
chr19 13051444 13051444 1 + A G UCEC 13051441 + 13051421 13051461 41 ATGGACGGAGAGTGGGAACCCCCAGTGATTCAGAACCCTGA ATGGACGGAGAGTGGGAACCCCCGGTGATTCAGAACCCTGA < 41bp 0.536991871924494 0.763583452448135 0.58060884 0.5701711 prediction 0.453183161047281 Functional Gain - CALR ENSG00000179218 CDS Human protein_coding chr19:13051441 chr19:13051444 synonymous SNV . 0 24 hm5C_associated_SNPs_116690 0 0 1 0 2 CALR chr19:13051468 5'GT 13051468 Upstream 25bp
chr14 21961323 21961323 1 + T C UCEC 21961321 + 21961301 21961341 41 CACCAACTGTGGAAAGTAGTCCTGAGCGGCCTATGAACAAC CACCAACTGTGGAAAGTAGTCCCGAGCGGCCTATGAACAAC < 41bp 0.623652867249584 0.850240520980329 0.09561005 0.07227239 prediction 0.453175307461491 Functional Gain - TOX4 ENSG00000092203 CDS Human protein_coding chr14:21961321 chr14:21961323 synonymous SNV . 0 23 hm5C_associated_SNPs_116692 0 0 1 0 1 TOX4 chr14:21961416 5'GT 21961416 Upstream 94bp
chr15 81585185 81585185 1 + C T CESC 81585184 + 81585164 81585204 41 CCCAGGAGAGCCCACCCCTCCCAGAGAGCCGGGACAGCCAC CCCAGGAGAGCCCACCCCTCCTAGAGAGCCGGGACAGCCAC < 41bp 0.548869237987818 0.775453710598569 0.22628236 0.122181416 prediction 0.453168945221503 Functional Gain - IL16 ENSG00000172349 CDS Human protein_coding chr15:81585184 chr15:81585185 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_116693 0 0 0 0 1 IL16 chr15:81585240 5'GT 81585240 Upstream 56bp
chr20 55033439 55033439 1 + C A UCEC 55033438 + 55033418 55033458 41 AGCCTTCGAGTCAACAGACTCCTGAGAGGAAACCCCGCTTA AGCCTTCGAGTCAACAGACTCATGAGAGGAAACCCCGCTTA < 41bp 0.589631899700377 0.81620244944584 0.20186293 0.3936369 prediction 0.453141099490927 Functional Gain - CASS4 ENSG00000087589 CDS Human protein_coding chr20:55033438 chr20:55033439 nonsynonymous SNV 0.003 2 22 hm5C_associated_SNPs_116698 0 0 0 0 1 CASS4 chr20:55033396 3'AG 55033396 Downstream 44bp
chr22 31523491 31523491 1 + C T UCEC 31523490 + 31523470 31523510 41 GCCTCCAGCAGTTCCAAGGGCCGGGCGCACAGGGCATCCTG GCCTCCAGCAGTTCCAAGGGCTGGGCGCACAGGGCATCCTG < 41bp 0.533076303655556 0.7596315605629 0.5173599 0.18560344 prediction 0.453110513814688 Functional Gain - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31523490 chr22:31523491 nonsynonymous SNV 0.479 2 22 hm5C_associated_SNPs_116701 0 0 0 0 1 INPP5J chr22:31523518 5'GT 31523518 Upstream 28bp
chrX 48371067 48371067 1 + C A COAD 48371066 + 48371046 48371086 41 TGCGTGGGCCCCTACCTCTTCCCGTACTTCATCCCCCTCAA TGCGTGGGCCCCTACCTCTTCACGTACTTCATCCCCCTCAA < 41bp 0.581239969269139 0.807794636046779 0.27044803 0.32595205 prediction 0.453109333555281 Functional Gain - PORCN ENSG00000102312 CDS Human protein_coding chrX:48371066 chrX:48371067 nonsynonymous SNV 0.989 1 22 hm5C_associated_SNPs_116702 0 0 0 0 2 PORCN chrX:48370977 3'AG 48370977 Downstream 91bp
chrX 48371067 48371067 1 + C A COAD 48371066 + 48371046 48371086 41 TGCGTGGGCCCCTACCTCTTCCCGTACTTCATCCCCCTCAA TGCGTGGGCCCCTACCTCTTCACGTACTTCATCCCCCTCAA < 41bp 0.581239969269139 0.807794636046779 0.27044803 0.32595205 prediction 0.453109333555281 Functional Gain - PORCN ENSG00000102312 CDS Human protein_coding chrX:48371066 chrX:48371067 nonsynonymous SNV 0.989 1 22 hm5C_associated_SNPs_116702 0 0 0 0 2 PORCN chrX:48371107 5'GT 48371107 Upstream 41bp
chr15 41137177 41137177 1 + C G rs12323939 41137173 + 41137153 41137193 41 GGGAGGGCTTCATCAACTACCTCACGAGGGAAGTGTACCGC GGGAGGGCTTCATCAACTACCTCAGGAGGGAAGTGTACCGC < 41bp 0.434957542127982 0.726552545316364 0.033385336 0.067800194 prediction 0.453105090632728 Functional Gain - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41137173 chr15:41137177 nonsynonymous SNV 0.062 0 25 hm5C_associated_SNPs_116703 0 0 0 0 1 SPINT1 chr15:41137227 5'GT 41137227 Upstream 51bp
chr16 28944282 28944282 1 + C T rs117769220 28944281 + 28944261 28944301 41 CTAGGTGGCCTGGGCTGTGGCCTGAAGAACAGGTCCTCAGA CTAGGTGGCCTGGGCTGTGGCTTGAAGAACAGGTCCTCAGA < 41bp 0.480938070585456 0.726549895700387 0.40134922 0.19304809 prediction 0.453099791400774 Functional Gain - CD19 ENSG00000177455 CDS Human protein_coding chr16:28944281 chr16:28944282 synonymous SNV . 0 22 hm5C_associated_SNPs_116704 1 0 0 0 1 CD19 chr16:28944232 3'AG 28944232 Downstream 51bp
chr17 9541945 9541945 1 + A G THYM 9541942 + 9541922 9541962 41 CCAGGCGTCTCAGGAGGAATCAGATGATACTAGCCAACACC CCAGGCGTCTCAGGAGGAATCAGGTGATACTAGCCAACACC < 41bp 0.550889015996981 0.777430801634113 0.79452527 0.91093636 prediction 0.453083571274264 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9541942 chr17:9541945 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_116706 0 0 0 0 2 CFAP52 chr17:9541926 3'AG 9541926 Downstream 20bp
chr17 9541945 9541945 1 + A G THYM 9541942 + 9541922 9541962 41 CCAGGCGTCTCAGGAGGAATCAGATGATACTAGCCAACACC CCAGGCGTCTCAGGAGGAATCAGGTGATACTAGCCAACACC < 41bp 0.550889015996981 0.777430801634113 0.79452527 0.91093636 prediction 0.453083571274264 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9541942 chr17:9541945 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_116706 0 0 0 0 2 CFAP52 chr17:9542028 5'GT 9542028 Upstream 84bp
chr8 28186778 28186778 1 + C A PRAD 28186774 + 28186754 28186794 41 CATGCCAGGAGAAGCTCCACCCAGCCCTGGACAGCTTCGAC CATGCCAGGAGAAGCTCCACCCAGACCTGGACAGCTTCGAC < 41bp 0.311922370273095 0.726537966333131 0.36719304 0.46217003 prediction 0.453075932666263 Functional Gain - PNOC ENSG00000168081 CDS Human protein_coding chr8:28186774 chr8:28186778 nonsynonymous SNV 0.981 0 25 hm5C_associated_SNPs_116707 0 0 0 0 1 PNOC chr8:28186800 5'GT 28186800 Upstream 23bp
chr19 3193402 3193402 1 + C T CESC 3193401 + 3193381 3193421 41 ACCCAGGCTGCCTCCGCCTCCCAGGGCTCCGCCTCTGCTGC ACCCAGGCTGCCTCCGCCTCCTAGGGCTCCGCCTCTGCTGC < 41bp 0.56532404900131 0.79185905912573 0.89488405 0.38407087 prediction 0.45307002024884 Functional Gain - NCLN ENSG00000125912 CDS Human protein_coding chr19:3193401 chr19:3193402 stopgain 0.948 0 22 hm5C_associated_SNPs_116708 1 0 1 0 1 NCLN chr19:3193426 5'GT 3193426 Upstream 25bp
chr17 4619471 4619471 1 + C A LGG 4619467 + 4619447 4619487 41 GTGGTGCTTGTGGACCCTGACTACCTGAAGGACCGCAAAGG GTGGTGCTTGTGGACCCTGACTACATGAAGGACCGCAAAGG < 41bp 0.301266179670736 0.72653274407818 0.09365776 0.9051974 prediction 0.453065488156361 Functional Gain - ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4619467 chr17:4619471 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_116709 0 0 1 0 2 ARRB2 chr17:4619442 3'AG 4619442 Downstream 30bp
chr17 4619471 4619471 1 + C A LGG 4619467 + 4619447 4619487 41 GTGGTGCTTGTGGACCCTGACTACCTGAAGGACCGCAAAGG GTGGTGCTTGTGGACCCTGACTACATGAAGGACCGCAAAGG < 41bp 0.301266179670736 0.72653274407818 0.09365776 0.9051974 prediction 0.453065488156361 Functional Gain - ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4619467 chr17:4619471 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_116709 0 0 1 0 2 ARRB2 chr17:4619486 5'GT 4619486 Upstream 16bp
chr16 28602126 28602126 1 + C A SKCM 28602125 + 28602105 28602145 41 TGAGCCGGCGCCGTGTCATCCCGCTGCCCCAGTGGAAGGCC TGAGCCGGCGCCGTGTCATCCAGCTGCCCCAGTGGAAGGCC < 41bp 0.462241752781736 0.726529838483396 0.41388842 0.8397776 prediction 0.453059676966792 Functional Gain - SGF29 ENSG00000176476 CDS Human protein_coding chr16:28602125 chr16:28602126 nonsynonymous SNV 0.954 4 22 hm5C_associated_SNPs_116714 0 0 1 0 1 SGF29 chr16:28602094 3'AG 28602094 Downstream 33bp
chr3 114014405 114014405 1 + C G LGG 114014401 + 114014381 114014421 41 CTCTTCCCTAGGAATGATGACAGGCACAATAGAAACAACGG CTCTTCCCTAGGAATGATGACAGGGACAATAGAAACAACGG < 41bp 0.429443461020433 0.726527932875044 0.1988774 0.26790053 prediction 0.453055865750088 Functional Gain - TIGIT ENSG00000181847 CDS Human protein_coding chr3:114014401 chr3:114014405 synonymous SNV . 0 25 hm5C_associated_SNPs_116715 0 0 0 0 1 TIGIT chr3:114014392 3'AG 114014392 Downstream 14bp
chr2 108875201 108875201 1 + T A LUAD 108875197 + 108875177 108875217 41 TGACTTCTTCCAGTTGTTGGCGGGTCCTGGTTTGACCATGT TGACTTCTTCCAGTTGTTGGCGGGACCTGGTTTGACCATGT < 41bp 0.632533595766587 0.859055133279313 0.88812494 0.8998648 prediction 0.453043075025453 Functional Gain - SULT1C3 ENSG00000196228 CDS Human protein_coding chr2:108875197 chr2:108875201 nonsynonymous SNV 0.182 2 25 hm5C_associated_SNPs_116717 0 0 0 0 2 SULT1C3 chr2:108875190 3'AG 108875190 Downstream 12bp
chr2 108875201 108875201 1 + T A LUAD 108875197 + 108875177 108875217 41 TGACTTCTTCCAGTTGTTGGCGGGTCCTGGTTTGACCATGT TGACTTCTTCCAGTTGTTGGCGGGACCTGGTTTGACCATGT < 41bp 0.632533595766587 0.859055133279313 0.88812494 0.8998648 prediction 0.453043075025453 Functional Gain - SULT1C3 ENSG00000196228 CDS Human protein_coding chr2:108875197 chr2:108875201 nonsynonymous SNV 0.182 2 25 hm5C_associated_SNPs_116717 0 0 0 0 2 SULT1C3 chr2:108875284 5'GT 108875284 Upstream 84bp
chr5 140858064 140858064 1 + C T UCEC 140858063 + 140858043 140858083 41 ACACGCTGCGGAGCTGTGATCCGGTGTTCTATAGGCAGGTG ACACGCTGCGGAGCTGTGATCTGGTGTTCTATAGGCAGGTG < 41bp 0.500043625701321 0.72654551511666 0.87931204 0.7414134 prediction 0.453003778830678 Functional Gain - PCDHGC3 ENSG00000240184 CDS Human protein_coding chr5:140858063 chr5:140858064 nonsynonymous SNV 0.625 2 22 hm5C_associated_SNPs_116722 0 0 0 0 1 PCDHGC3 chr5:140858113 5'GT 140858113 Upstream 50bp
chr11 34680082 34680082 1 + C T SKCM 34680081 + 34680061 34680101 41 CCTTTCTGCTTTTCATCAGACCCGAGAGGGACTCACTTATG CCTTTCTGCTTTTCATCAGACTCGAGAGGGACTCACTTATG < 41bp 0.554760688532155 0.781252264264418 0.14472786 0.23903564 prediction 0.452983151464526 Functional Gain - EHF ENSG00000135373 CDS Human protein_coding chr11:34680081 chr11:34680082 nonsynonymous SNV 0.618 2 22 hm5C_associated_SNPs_116725 0 0 0 0 1 EHF chr11:34680080 3'AG 34680080 Downstream 3bp
chr16 2035892 2035892 1 + C A SKCM 2035891 + 2035871 2035911 41 TGCAGGAACCACCCAGACACCCGCACCCGGGCATGCTTCAC TGCAGGAACCACCCAGACACCAGCACCCGGGCATGCTTCAC < 41bp 0.57195888209478 0.798449935399427 0.10694009 0.09201276 prediction 0.452982106609293 Functional Gain - GFER ENSG00000127554 CDS Human protein_coding chr16:2035891 chr16:2035892 nonsynonymous SNV 0.622 0 22 hm5C_associated_SNPs_116726 0 0 1 0 1 GFER chr16:2035867 3'AG 2035867 Downstream 26bp
chr19 49633717 49633717 1 + C G GBM 49633713 + 49633693 49633733 41 AGGAGGCCCTGGAGCGGCAGCGCGCCGAGGTGTGCCAGCTG AGGAGGCCCTGGAGCGGCAGCGCGGCGAGGTGTGCCAGCTG < 41bp 0.630347831997123 0.856834637096113 0.60457337 0.89828444 prediction 0.452973610197981 Functional Gain - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49633713 chr19:49633717 nonsynonymous SNV 0.755 0 25 hm5C_associated_SNPs_116729 0 0 1 0 1 PPFIA3 chr19:49633635 3'AG 49633635 Downstream 83bp
chr20 4680070 4680070 1 + T C rs532493114 4680068 + 4680048 4680088 41 ATGGTGGTGGCTGGGGGCAGCCTCATGGTGGTGGCTGGGGG ATGGTGGTGGCTGGGGGCAGCCCCATGGTGGTGGCTGGGGG < 41bp 0.598795574883041 0.825276900475224 0.5182059 0.8765784 prediction 0.452962651184367 Functional Gain - PRNP ENSG00000171867 CDS Human protein_coding chr20:4680068 chr20:4680070 synonymous SNV . 0 23 hm5C_associated_SNPs_116731 1 0 1 0 1 PRNP chr20:4680125 5'GT 4680125 Upstream 56bp
chr19 48229404 48229404 1 + C A rs150300804 48229403 + 48229383 48229423 41 CTGGAGGAGCAGGACCTCTTCCGCGACATCCAGGGCCTGCC CTGGAGGAGCAGGACCTCTTCAGCGACATCCAGGGCCTGCC < 41bp 0.583202508959925 0.809681666628419 0.51874 0.6081091 prediction 0.452958315336988 Functional Gain - EHD2 ENSG00000024422 CDS Human protein_coding chr19:48229403 chr19:48229404 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_116733 0 0 1 0 1 EHD2 chr19:48229481 5'GT 48229481 Upstream 78bp
chrX 77264661 77264661 1 + A G rs184136556 77264658 + 77264638 77264678 41 GAGTCTAGTCTCACAAAACACAGAGGGATCCTATACTGCTC GAGTCTAGTCTCACAAAACACAGGGGGATCCTATACTGCTC < 41bp 0.499096280215317 0.726461222951919 0.91413903 0.936662 prediction 0.452922445903837 Functional Gain - ATP7A ENSG00000165240 CDS Human protein_coding chrX:77264658 chrX:77264661 synonymous SNV . 0 24 hm5C_associated_SNPs_116735 0 0 0 0 2 ATP7A chrX:77264599 3'AG 77264599 Downstream 63bp
chrX 77264661 77264661 1 + A G rs184136556 77264658 + 77264638 77264678 41 GAGTCTAGTCTCACAAAACACAGAGGGATCCTATACTGCTC GAGTCTAGTCTCACAAAACACAGGGGGATCCTATACTGCTC < 41bp 0.499096280215317 0.726461222951919 0.91413903 0.936662 prediction 0.452922445903837 Functional Gain - ATP7A ENSG00000165240 CDS Human protein_coding chrX:77264658 chrX:77264661 synonymous SNV . 0 24 hm5C_associated_SNPs_116735 0 0 0 0 2 ATP7A chrX:77264760 5'GT 77264760 Upstream 100bp
chr11 117864047 117864047 1 + A G rs2256111 117864044 + 117864024 117864064 41 CCCAGGCCCAAGATGGCCCCCGCAAATGACACATATGAAAG CCCAGGCCCAAGATGGCCCCCGCGAATGACACATATGAAAG < 41bp 0.534154425317917 0.760610145956489 0.113378406 0.15947655 prediction 0.452911441277143 Functional Gain - IL10RA ENSG00000110324 CDS Human protein_coding chr11:117864044 chr11:117864047 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_116737 2 0 0 0 2 IL10RA chr11:117863956 3'AG 117863956 Downstream 92bp
chr11 117864047 117864047 1 + A G rs2256111 117864044 + 117864024 117864064 41 CCCAGGCCCAAGATGGCCCCCGCAAATGACACATATGAAAG CCCAGGCCCAAGATGGCCCCCGCGAATGACACATATGAAAG < 41bp 0.534154425317917 0.760610145956489 0.113378406 0.15947655 prediction 0.452911441277143 Functional Gain - IL10RA ENSG00000110324 CDS Human protein_coding chr11:117864044 chr11:117864047 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_116737 2 0 0 0 2 IL10RA chr11:117864125 5'GT 117864125 Upstream 79bp
chr1 40422852 40422852 1 + C T OV 40422851 + 40422831 40422871 41 TACCAGGTGACGGGCTGTGCCCTGGGTTTCTTCCTTCAGAT TACCAGGTGACGGGCTGTGCCTTGGGTTTCTTCCTTCAGAT < 41bp 0.487328060316946 0.726455487593746 0.18610474 0.18869227 prediction 0.452910975187493 Functional Gain - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40422851 chr1:40422852 synonymous SNV . 0 22 hm5C_associated_SNPs_116738 0 0 0 0 2 MFSD2A chr1:40422759 3'AG 40422759 Downstream 94bp
chr1 40422852 40422852 1 + C T OV 40422851 + 40422831 40422871 41 TACCAGGTGACGGGCTGTGCCCTGGGTTTCTTCCTTCAGAT TACCAGGTGACGGGCTGTGCCTTGGGTTTCTTCCTTCAGAT < 41bp 0.487328060316946 0.726455487593746 0.18610474 0.18869227 prediction 0.452910975187493 Functional Gain - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40422851 chr1:40422852 synonymous SNV . 0 22 hm5C_associated_SNPs_116738 0 0 0 0 2 MFSD2A chr1:40422893 5'GT 40422893 Upstream 42bp
chr3 129267902 129267902 1 + C T SKCM 129267901 + 129267881 129267921 41 AGATGGCCCCCGCGACGGCTCCCAGGAGAGCGGGTGAGGCC AGATGGCCCCCGCGACGGCTCTCAGGAGAGCGGGTGAGGCC < 41bp 0.482083953173579 0.726454904896755 0.05916992 0.038330227 prediction 0.452909809793509 Functional Gain - H1FOO ENSG00000178804 CDS Human protein_coding chr3:129267901 chr3:129267902 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_116740 0 0 0 0 1 H1FOO chr3:129267844 3'AG 129267844 Downstream 59bp
chr10 82369196 82369196 1 + C A LAML 82369195 + 82369175 82369215 41 TTCAGCAGGACCTGGGAGCGCCCGCTGCGCCCAGTCTCCAG TTCAGCAGGACCTGGGAGCGCACGCTGCGCCCAGTCTCCAG < 41bp 0.572547188230344 0.798995831709555 0.022663057 0.049927205 prediction 0.452897286958423 Functional Gain - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82369195 chr10:82369196 nonsynonymous SNV 0.778 1 22 hm5C_associated_SNPs_116743 0 0 0 0 2 SH2D4B chr10:82369180 3'AG 82369180 Downstream 17bp
chr10 82369196 82369196 1 + C A LAML 82369195 + 82369175 82369215 41 TTCAGCAGGACCTGGGAGCGCCCGCTGCGCCCAGTCTCCAG TTCAGCAGGACCTGGGAGCGCACGCTGCGCCCAGTCTCCAG < 41bp 0.572547188230344 0.798995831709555 0.022663057 0.049927205 prediction 0.452897286958423 Functional Gain - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82369195 chr10:82369196 nonsynonymous SNV 0.778 1 22 hm5C_associated_SNPs_116743 0 0 0 0 2 SH2D4B chr10:82369183 3'AG 82369183 Downstream 14bp
chr3 141626037 141626037 1 + C T rs72988221 141626036 + 141626016 141626056 41 GGTTTTTCCAAAACCAGTGACCGCATTGGAATATACATTCA GGTTTTTCCAAAACCAGTGACTGCATTGGAATATACATTCA < 41bp 0.477898170625924 0.726448248380111 0.037528902 0.3099482 prediction 0.452896496760222 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141626036 chr3:141626037 synonymous SNV . 0 22 hm5C_associated_SNPs_116744 0 0 1 0 2 ATP1B3 chr3:141626009 3'AG 141626009 Downstream 29bp
chr3 141626037 141626037 1 + C T rs72988221 141626036 + 141626016 141626056 41 GGTTTTTCCAAAACCAGTGACCGCATTGGAATATACATTCA GGTTTTTCCAAAACCAGTGACTGCATTGGAATATACATTCA < 41bp 0.477898170625924 0.726448248380111 0.037528902 0.3099482 prediction 0.452896496760222 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141626036 chr3:141626037 synonymous SNV . 0 22 hm5C_associated_SNPs_116744 0 0 1 0 2 ATP1B3 chr3:141626116 5'GT 141626116 Upstream 80bp
chr9 35608465 35608465 1 + A G UCEC 35608462 + 35608442 35608482 41 ATGGATCCTGGAGCAGCTGCCTGAGCCAGCCCCACTCACCA ATGGATCCTGGAGCAGCTGCCTGGGCCAGCCCCACTCACCA < 41bp 0.481140641435442 0.726447088035882 0.36430967 0.7204957 prediction 0.452894176071764 Functional Gain - TESK1 ENSG00000107140 CDS Human protein_coding chr9:35608462 chr9:35608465 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_116745 0 0 1 0 1 TESK1 chr9:35608392 3'AG 35608392 Downstream 74bp
chr15 65239703 65239703 1 + T C rs571389209 65239700 + 65239680 65239720 41 GGAAACACAGCAGCTCCGTTCTGTGCTGTGGCGGCTGGCCT GGAAACACAGCAGCTCCGTTCTGCGCTGTGGCGGCTGGCCT < 41bp 0.51740718832624 0.743853606110668 0.30558836 0.31289035 prediction 0.452892835568854 Functional Gain - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65239700 chr15:65239703 nonsynonymous SNV 0.964 1 24 hm5C_associated_SNPs_116746 0 0 0 0 1 ANKDD1A chr15:65239624 3'AG 65239624 Downstream 80bp
chrX 73749267 73749267 1 + C T BLCA 73749266 + 73749246 73749286 41 CTGCCAATGATTGCTGGGCCCCCCATTGCAGGTGAGGCTGA CTGCCAATGATTGCTGGGCCCTCCATTGCAGGTGAGGCTGA < 41bp 0.592405612483531 0.818849571357819 0.021258593 0.9515891 prediction 0.452887917748577 Functional Gain - SLC16A2 ENSG00000147100 CDS Human protein_coding chrX:73749266 chrX:73749267 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_116747 0 0 1 0 1 SLC16A2 chrX:73749276 5'GT 73749276 Upstream 10bp
chr7 73811452 73811452 1 + C T SKCM 73811451 + 73811431 73811471 41 GCTGGAGGCCAATCGTCACTCCCCAGGGCCGGAGAGGGACC GCTGGAGGCCAATCGTCACTCTCCAGGGCCGGAGAGGGACC < 41bp 0.622165987169646 0.848605029601778 0.1664103 0.916088 prediction 0.452878084864265 Functional Gain - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73811451 chr7:73811452 synonymous SNV . 0 22 hm5C_associated_SNPs_116749 0 0 1 0 1 CLIP2 chr7:73811404 3'AG 73811404 Downstream 49bp
chr19 2987015 2987015 1 + C T SKCM 2987014 + 2986994 2987034 41 AACCAGCCAGCCCTGGGACGCCCCAGCAGGTGAAGGACAAG AACCAGCCAGCCCTGGGACGCTCCAGCAGGTGAAGGACAAG < 41bp 0.467230373726499 0.72643362469135 0.12910399 0.91450274 prediction 0.4528672493827 Functional Gain - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2987014 chr19:2987015 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_116751 0 0 0 0 1 TLE6 chr19:2986981 3'AG 2986981 Downstream 35bp
chr1 203743058 203743058 1 + A G CHOL 203743055 + 203743035 203743075 41 TACAGCCCACATCCATGCCACAGAGTACGCGGTGGGTATCT TACAGCCCACATCCATGCCACAGGGTACGCGGTGGGTATCT < 41bp 0.559097714726264 0.785530881033944 0.06642875 0.5561158 prediction 0.45286633261536 Functional Gain - LAX1 ENSG00000122188 CDS Human protein_coding chr1:203743055 chr1:203743058 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_116752 0 0 0 0 1 LAX1 chr1:203743003 3'AG 203743003 Downstream 56bp
chr1 197887088 197887088 1 + C T GBM 197887087 + 197887067 197887107 41 GCGCAGATCCAAGACTGAGGCCCGTCTGGCCAAAGGCGCCC GCGCAGATCCAAGACTGAGGCTCGTCTGGCCAAAGGCGCCC < 41bp 0.521886492883511 0.74831573803092 0.061903626 0.17467153 prediction 0.452858490294819 Functional Gain - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197887087 chr1:197887088 synonymous SNV . 0 22 hm5C_associated_SNPs_116754 0 0 0 0 1 LHX9 chr1:197887009 3'AG 197887009 Downstream 80bp
chr11 1858034 1858034 1 + T A LIHC 1858030 + 1858010 1858050 41 TTCTCTCTCCGGTACGTGCCCAGCTCAGGCCGGCTGACCGT TTCTCTCTCCGGTACGTGCCCAGCACAGGCCGGCTGACCGT < 41bp 0.655807437137409 0.882234626915097 0.13662946 0.12045804 prediction 0.452854379555376 Functional Gain - SYT8 ENSG00000149043 CDS Human protein_coding chr11:1858030 chr11:1858034 nonsynonymous SNV 0.377 0 25 hm5C_associated_SNPs_116756 0 0 1 0 2 SYT8 chr11:1857986 3'AG 1857986 Downstream 49bp
chr11 1858034 1858034 1 + T A LIHC 1858030 + 1858010 1858050 41 TTCTCTCTCCGGTACGTGCCCAGCTCAGGCCGGCTGACCGT TTCTCTCTCCGGTACGTGCCCAGCACAGGCCGGCTGACCGT < 41bp 0.655807437137409 0.882234626915097 0.13662946 0.12045804 prediction 0.452854379555376 Functional Gain - SYT8 ENSG00000149043 CDS Human protein_coding chr11:1858030 chr11:1858034 nonsynonymous SNV 0.377 0 25 hm5C_associated_SNPs_116756 0 0 1 0 2 SYT8 chr11:1858091 5'GT 1858091 Upstream 58bp
chr1 156038218 156038218 1 + C T SKCM 156038217 + 156038197 156038237 41 AAAAGTGACCTCAGCCAGGCCCGGGAAGTGCCCACTGAGGA AAAAGTGACCTCAGCCAGGCCTGGGAAGTGCCCACTGAGGA < 41bp 0.568305890405963 0.79472952223967 0.3694606 0.236476 prediction 0.452847263667412 Functional Gain - RAB25 ENSG00000132698 CDS Human protein_coding chr1:156038217 chr1:156038218 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_116758 0 0 0 0 1 RAB25 chr1:156038254 5'GT 156038254 Upstream 37bp
chr12 57971825 57971825 1 + A G LUSC 57971822 + 57971802 57971842 41 TCCAGACCCTCCACAACCTTCGCAAGCTGTTCGTTCAAGAC TCCAGACCCTCCACAACCTTCGCGAGCTGTTCGTTCAAGAC < 41bp 0.546195318708762 0.772612309764894 0.23336351 0.20413506 prediction 0.452833982112265 Functional Gain - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57971822 chr12:57971825 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_116761 0 0 1 0 2 KIF5A chr12:57971792 3'AG 57971792 Downstream 34bp
chr12 57971825 57971825 1 + A G LUSC 57971822 + 57971802 57971842 41 TCCAGACCCTCCACAACCTTCGCAAGCTGTTCGTTCAAGAC TCCAGACCCTCCACAACCTTCGCGAGCTGTTCGTTCAAGAC < 41bp 0.546195318708762 0.772612309764894 0.23336351 0.20413506 prediction 0.452833982112265 Functional Gain - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57971822 chr12:57971825 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_116761 0 0 1 0 2 KIF5A chr12:57971863 5'GT 57971863 Upstream 39bp
chr14 70234911 70234911 1 + C G CESC 70234910 + 70234890 70234930 41 TATTCATCGGGAGACTAAATCCAGCGGCCAGGGAGAAGGAC TATTCATCGGGAGACTAAATCGAGCGGCCAGGGAGAAGGAC < 41bp 0.398715331431714 0.726415799413247 0.9095626 0.9348837 prediction 0.452831598826494 Functional Gain - SRSF5 ENSG00000100650 CDS Human protein_coding chr14:70234910 chr14:70234911 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_116762 0 0 1 0 2 SRSF5 chr14:70234855 3'AG 70234855 Downstream 57bp
chr14 70234911 70234911 1 + C G CESC 70234910 + 70234890 70234930 41 TATTCATCGGGAGACTAAATCCAGCGGCCAGGGAGAAGGAC TATTCATCGGGAGACTAAATCGAGCGGCCAGGGAGAAGGAC < 41bp 0.398715331431714 0.726415799413247 0.9095626 0.9348837 prediction 0.452831598826494 Functional Gain - SRSF5 ENSG00000100650 CDS Human protein_coding chr14:70234910 chr14:70234911 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_116762 0 0 1 0 2 SRSF5 chr14:70234999 5'GT 70234999 Upstream 89bp
chr10 75520112 75520112 1 + C T LUSC 75520111 + 75520091 75520131 41 CACTGCCACCTATGCACTCCCCGCAGCAGCCAGGCTATCAG CACTGCCACCTATGCACTCCCTGCAGCAGCCAGGCTATCAG < 41bp 0.599131293336412 0.825546329067186 0.022362053 0.061915904 prediction 0.452830071461548 Functional Gain - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75520111 chr10:75520112 nonsynonymous SNV 0.121 0 22 hm5C_associated_SNPs_116763 0 0 1 0 1 SEC24C chr10:75520144 5'GT 75520144 Upstream 33bp
chr20 2575516 2575516 1 + C A STAD 2575515 + 2575495 2575535 41 TTCTATGGCTACTACAACAACCAGAGGACCATCGGGTGGCT TTCTATGGCTACTACAACAACAAGAGGACCATCGGGTGGCT < 41bp 0.595358923406792 0.821760430149541 0.40578732 0.2004515 prediction 0.452803013485498 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2575515 chr20:2575516 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_116769 0 0 0 0 2 TMC2 chr20:2575471 3'AG 2575471 Downstream 46bp
chr20 2575516 2575516 1 + C A STAD 2575515 + 2575495 2575535 41 TTCTATGGCTACTACAACAACCAGAGGACCATCGGGTGGCT TTCTATGGCTACTACAACAACAAGAGGACCATCGGGTGGCT < 41bp 0.595358923406792 0.821760430149541 0.40578732 0.2004515 prediction 0.452803013485498 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2575515 chr20:2575516 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_116769 0 0 0 0 2 TMC2 chr20:2575613 5'GT 2575613 Upstream 98bp
chr10 94452258 94452258 1 + C T CESC 94452257 + 94452237 94452277 41 GCAGAAATATCTCTCTCCGCCCGAGAGGAAGCGTCTGGCCA GCAGAAATATCTCTCTCCGCCTGAGAGGAAGCGTCTGGCCA < 41bp 0.477786893986531 0.726398487231581 0.08385643 0.065821946 prediction 0.452796974463161 Functional Gain - HHEX ENSG00000152804 CDS Human protein_coding chr10:94452257 chr10:94452258 synonymous SNV . 0 22 hm5C_associated_SNPs_116770 0 0 1 0 1 HHEX chr10:94452303 5'GT 94452303 Upstream 46bp
chr2 29258369 29258369 1 + C T COAD 29258368 + 29258348 29258388 41 AAGGCTGGTGGGGCTGCGCTCCACACTGCAGGGCCGCGGGG AAGGCTGGTGGGGCTGCGCTCTACACTGCAGGGCCGCGGGG < 41bp 0.583708637293851 0.810106448687134 0.041067034 0.24687281 prediction 0.452795622786565 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29258368 chr2:29258369 synonymous SNV . 0 22 hm5C_associated_SNPs_116771 0 0 0 0 1 TOGARAM2 chr2:29258330 3'AG 29258330 Downstream 40bp
chr9 129974446 129974446 1 + C G rs113969504 129974445 + 129974425 129974465 41 CATCTGTTCTCTGGGGAACTCCGCAGCTGTGCCCACCATGG CATCTGTTCTCTGGGGAACTCGGCAGCTGTGCCCACCATGG < 41bp 0.648979013663222 0.875373679531026 0.76900566 0.9194478 prediction 0.452789331735608 Functional Gain - RALGPS1 ENSG00000136828 CDS Human protein_coding chr9:129974445 chr9:129974446 synonymous SNV . 0 22 hm5C_associated_SNPs_116773 0 0 1 0 2 RALGPS1 chr9:129974410 3'AG 129974410 Downstream 37bp
chr9 129974446 129974446 1 + C G rs113969504 129974445 + 129974425 129974465 41 CATCTGTTCTCTGGGGAACTCCGCAGCTGTGCCCACCATGG CATCTGTTCTCTGGGGAACTCGGCAGCTGTGCCCACCATGG < 41bp 0.648979013663222 0.875373679531026 0.76900566 0.9194478 prediction 0.452789331735608 Functional Gain - RALGPS1 ENSG00000136828 CDS Human protein_coding chr9:129974445 chr9:129974446 synonymous SNV . 0 22 hm5C_associated_SNPs_116773 0 0 1 0 2 RALGPS1 chr9:129974515 5'GT 129974515 Upstream 70bp
chr20 30486295 30486295 1 + C T COAD 30486294 + 30486274 30486314 41 AGAGAGCAGAGAGCATCGATCCGGTTCAAGACCACCCTCAT AGAGAGCAGAGAGCATCGATCTGGTTCAAGACCACCCTCAT < 41bp 0.488108325398171 0.726392044687787 0.85051155 0.33723155 prediction 0.452784089375574 Functional Gain - TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30486294 chr20:30486295 nonsynonymous SNV 0.923 4 22 hm5C_associated_SNPs_116774 0 0 0 0 2 TTLL9 chr20:30486276 3'AG 30486276 Downstream 20bp
chr20 30486295 30486295 1 + C T COAD 30486294 + 30486274 30486314 41 AGAGAGCAGAGAGCATCGATCCGGTTCAAGACCACCCTCAT AGAGAGCAGAGAGCATCGATCTGGTTCAAGACCACCCTCAT < 41bp 0.488108325398171 0.726392044687787 0.85051155 0.33723155 prediction 0.452784089375574 Functional Gain - TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30486294 chr20:30486295 nonsynonymous SNV 0.923 4 22 hm5C_associated_SNPs_116774 0 0 0 0 2 TTLL9 chr20:30486368 5'GT 30486368 Upstream 74bp
chr8 8093621 8093621 1 + C A rs531356250 8093620 + 8093600 8093640 41 ATCTGCAAGATATGCCGCCCCCGGGCATACATCTTCAGCGA ATCTGCAAGATATGCCGCCCCAGGGCATACATCTTCAGCGA < 41bp 0.557055111802706 0.783437297151236 0.38714358 0.5524156 prediction 0.452764370697061 Functional Gain - FAM86B3P ENSG00000173295;ENSG00000253981 ncRNA_exonic Human other chr8:8093620 chr8:8093621 . . 0 22 hm5C_associated_SNPs_116776 0 0 0 0 1 FAM86B3P chr8:8093554 3'AG 8093554 Downstream 68bp
chr3 37512598 37512598 1 + A G STAD 37512595 + 37512575 37512615 41 GTGTTCACACCAACCCTGACCGGAGATGCACCGAACTGGAC GTGTTCACACCAACCCTGACCGGGGATGCACCGAACTGGAC < 41bp 0.485558632694795 0.726378883087147 0.80364597 0.915857 prediction 0.452757766174294 Functional Gain - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37512595 chr3:37512598 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_116778 0 0 0 0 1 ITGA9 chr3:37512625 5'GT 37512625 Upstream 28bp
chr16 843200 843200 1 + C A rs115699849 843196 + 843176 843216 41 CGTGCGGGACGTGCAGGCCACACGCGTGGGCCTCAAGGACC CGTGCGGGACGTGCAGGCCACACGAGTGGGCCTCAAGGACC < 41bp 0.705120451618379 0.931499179580531 0.27400106 0.78912425 prediction 0.452757455924304 Functional Gain - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:843196 chr16:843200 synonymous SNV . 0 25 hm5C_associated_SNPs_116779 0 0 1 0 1 CHTF18 chr16:843144 3'AG 843144 Downstream 57bp
chr11 111864443 111864443 1 + T C rs189128197 111864440 + 111864420 111864460 41 AAAGATGTCCTCTTGGCTCACTGTATGAAAAGAGAGGCAGA AAAGATGTCCTCTTGGCTCACTGCATGAAAAGAGAGGCAGA < 41bp 0.491483269431249 0.726378588725372 0.08354649 0.13451895 prediction 0.452757177450744 Functional Gain - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111864440 chr11:111864443 synonymous SNV . 0 24 hm5C_associated_SNPs_116780 0 0 0 0 2 DIXDC1 chr11:111864393 3'AG 111864393 Downstream 51bp
chr11 111864443 111864443 1 + T C rs189128197 111864440 + 111864420 111864460 41 AAAGATGTCCTCTTGGCTCACTGTATGAAAAGAGAGGCAGA AAAGATGTCCTCTTGGCTCACTGCATGAAAAGAGAGGCAGA < 41bp 0.491483269431249 0.726378588725372 0.08354649 0.13451895 prediction 0.452757177450744 Functional Gain - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111864440 chr11:111864443 synonymous SNV . 0 24 hm5C_associated_SNPs_116780 0 0 0 0 2 DIXDC1 chr11:111864464 5'GT 111864464 Upstream 22bp
chr11 67190927 67190927 1 + C T UCEC 67190926 + 67190906 67190946 41 CACTTTGACATGACAGAGCACCGGAGGGATGAGGAGAACGC CACTTTGACATGACAGAGCACTGGAGGGATGAGGAGAACGC < 41bp 0.5668313676547 0.793199423859912 0.61837524 0.19935736 prediction 0.452736112410423 Functional Gain - CARNS1 ENSG00000172508 CDS Human protein_coding chr11:67190926 chr11:67190927 nonsynonymous SNV 0.958 2 22 hm5C_associated_SNPs_116786 0 0 0 0 1 CARNS1 chr11:67190846 3'AG 67190846 Downstream 82bp
chr7 142961667 142961667 1 + C A THCA 142961666 + 142961646 142961686 41 AAGCCTCCAGGTCTGCTTCCCCGCAAAGGACTATACATGGC AAGCCTCCAGGTCTGCTTCCCAGCAAAGGACTATACATGGC < 41bp 0.469171944573625 0.726354530352275 0.04463482 0.2621008 prediction 0.45270906070455 Functional Gain - GSTK1 ENSG00000197448 CDS Human protein_coding chr7:142961666 chr7:142961667 nonsynonymous SNV 0.090 0 22 hm5C_associated_SNPs_116793 0 0 1 0 1 GSTK1 chr7:142961641 3'AG 142961641 Downstream 27bp
chr20 33764014 33764014 1 + C T SKCM 33764013 + 33763993 33764033 41 CCTGGGCTGTGAGCTGCCTCCCGAGGGCTCTAGAGCCCATG CCTGGGCTGTGAGCTGCCTCCTGAGGGCTCTAGAGCCCATG < 41bp 0.560259600710437 0.786609968257702 0.78245807 0.25731152 prediction 0.45270073509453 Functional Gain - PROCR ENSG00000101000 CDS Human protein_coding chr20:33764013 chr20:33764014 synonymous SNV . 0 22 hm5C_associated_SNPs_116795 0 0 0 0 1 PROCR chr20:33763971 3'AG 33763971 Downstream 44bp
chr10 129536846 129536846 1 + C T STAD 129536845 + 129536825 129536865 41 ATGTTTGACAACGGGAACTTCCGAAGGAAGAGGAAGAGGAG ATGTTTGACAACGGGAACTTCTGAAGGAAGAGGAAGAGGAG < 41bp 0.563049901371281 0.78939230097283 0.78013825 0.34351528 prediction 0.452684799203098 Functional Gain - FOXI2 ENSG00000186766 CDS Human protein_coding chr10:129536845 chr10:129536846 stopgain 1.000 1 22 hm5C_associated_SNPs_116796 0 0 0 0 1 FOXI2 chr10:129536784 3'AG 129536784 Downstream 63bp
chr19 50209501 50209501 1 + C A LIHC 50209500 + 50209480 50209520 41 CCCTCCAGGGGCACGTGGGCCCAGGTGCGGACATCCCTGAA CCCTCCAGGGGCACGTGGGCCAAGGTGCGGACATCCCTGAA < 41bp 0.57217982432338 0.798515819050019 0.38817754 0.4536067 prediction 0.452671989453277 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50209500 chr19:50209501 nonsynonymous SNV 0.796 1 22 hm5C_associated_SNPs_116799 0 0 0 0 1 CPT1C chr19:50209488 3'AG 50209488 Downstream 14bp
chr9 101602387 101602387 1 + C T HNSC 101602386 + 101602366 101602406 41 TGTATCCAGAACTGCATGTGCCTGAGGACAGGCCTGGCTTC TGTATCCAGAACTGCATGTGCTTGAGGACAGGCCTGGCTTC < 41bp 0.579863063886035 0.806198154748077 0.26420593 0.19180843 prediction 0.452670181724084 Functional Gain - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101602386 chr9:101602387 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_116801 0 0 1 0 1 GALNT12 chr9:101602415 5'GT 101602415 Upstream 29bp
chr17 34964720 34964720 1 + C T UCEC 34964719 + 34964699 34964739 41 TGCAGCCAGAGGAAGGGTTTCCCCACAGAGGGGGAGAGAAG TGCAGCCAGAGGAAGGGTTTCTCCACAGAGGGGGAGAGAAG < 41bp 0.469056394616044 0.726331944077593 0.088573545 0.9635972 prediction 0.452663888155186 Functional Gain - MRM1 ENSG00000129282 CDS Human other chr17:34964719 chr17:34964720 nonsynonymous SNV 0.578 0 22 hm5C_associated_SNPs_116802 0 0 0 0 1 MRM1 chr17:34964679 3'AG 34964679 Downstream 42bp
chr2 7137104 7137104 1 + C T LUAD 7137103 + 7137083 7137123 41 CCTGGGACCTGGCCCTCGACCCGCTGGTGTCTTGCAAGCTC CCTGGGACCTGGCCCTCGACCTGCTGGTGTCTTGCAAGCTC < 41bp 0.571892287125789 0.7982215786802 0.23591319 0.1471512 prediction 0.452658583108822 Functional Gain - RNF144A ENSG00000151692 CDS Human protein_coding chr2:7137103 chr2:7137104 nonsynonymous SNV 0.962 4 22 hm5C_associated_SNPs_116804 0 0 1 0 2 RNF144A chr2:7137047 3'AG 7137047 Downstream 58bp
chr2 7137104 7137104 1 + C T LUAD 7137103 + 7137083 7137123 41 CCTGGGACCTGGCCCTCGACCCGCTGGTGTCTTGCAAGCTC CCTGGGACCTGGCCCTCGACCTGCTGGTGTCTTGCAAGCTC < 41bp 0.571892287125789 0.7982215786802 0.23591319 0.1471512 prediction 0.452658583108822 Functional Gain - RNF144A ENSG00000151692 CDS Human protein_coding chr2:7137103 chr2:7137104 nonsynonymous SNV 0.962 4 22 hm5C_associated_SNPs_116804 0 0 1 0 2 RNF144A chr2:7137192 5'GT 7137192 Upstream 89bp
chr4 178281803 178281803 1 + C A GBM 178281799 + 178281779 178281819 41 GGCAGTTTTATGCCTGTCCTCTACCTAGAGAAGCACAATGT GGCAGTTTTATGCCTGTCCTCTACATAGAGAAGCACAATGT < 41bp 0.293996102314941 0.726320381316806 0.11588195 0.89581347 prediction 0.452640762633613 Functional Gain - NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178281799 chr4:178281803 nonsynonymous SNV 0.842 2 25 hm5C_associated_SNPs_116809 0 0 1 0 1 NEIL3 chr4:178281831 5'GT 178281831 Upstream 29bp
chr11 86013504 86013504 1 + T C UCEC 86013502 + 86013482 86013522 41 GCCGTCGCCATGTTTGGCTGCTTGGTGGCGGGGAGGCTGGT GCCGTCGCCATGTTTGGCTGCTCGGTGGCGGGGAGGCTGGT < 41bp 0.577829358654509 0.804145771205769 0.2614746 0.25630626 prediction 0.45263282510252 Functional Gain - HIKESHI ENSG00000149196 CDS Human protein_coding chr11:86013502 chr11:86013504 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_116812 0 0 1 0 1 HIKESHI chr11:86013520 5'GT 86013520 Upstream 17bp
chr4 48385767 48385767 1 + A G SARC 48385764 + 48385744 48385784 41 TCAAATTTTCAAGTGCCAAACGGAGGAATACCTCGTATGCA TCAAATTTTCAAGTGCCAAACGGGGGAATACCTCGTATGCA < 41bp 0.525363670817959 0.75167568226836 0.90017354 0.93670404 prediction 0.452624022900802 Functional Gain - SLAIN2 ENSG00000109171 CDS Human protein_coding chr4:48385764 chr4:48385767 synonymous SNV . 0 24 hm5C_associated_SNPs_116815 0 0 1 0 1 SLAIN2 chr4:48385801 5'GT 48385801 Upstream 35bp
chr7 135312732 135312732 1 + T C COAD 135312730 + 135312710 135312750 41 GTTGAAATAAGCATGTTTGGCATGAGAGACCCTCCAATGTT GTTGAAATAAGCATGTTTGGCACGAGAGACCCTCCAATGTT < 41bp 0.452229413147312 0.726308098665493 0.18179709 0.25816834 prediction 0.452616197330986 Functional Gain - NUP205 ENSG00000155561 CDS Human protein_coding chr7:135312730 chr7:135312732 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_116817 0 0 1 0 1 NUP205 chr7:135312721 3'AG 135312721 Downstream 12bp
chr12 124155867 124155867 1 + T C UCEC 124155865 + 124155845 124155885 41 CTGAGGCTTCTGTGGGGGGACCTGGGTGTGTACGGCGCGGC CTGAGGCTTCTGTGGGGGGACCCGGGTGTGTACGGCGCGGC < 41bp 0.47686673008741 0.726305394741946 0.87575954 0.8972041 prediction 0.452610789483892 Functional Gain - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124155865 chr12:124155867 nonsynonymous SNV 0.848 1 23 hm5C_associated_SNPs_116818 0 0 1 0 1 TCTN2 chr12:124155869 5'GT 124155869 Upstream 3bp
chr22 20106642 20106642 1 + T G LUSC 20106639 + 20106619 20106659 41 TCCTGAGCAAGAAATTAAAACACTGGAAGAAGATGAAGAGG TCCTGAGCAAGAAATTAAAACACGGGAAGAAGATGAAGAGG < 41bp 0.335429023799958 0.726302676415856 0.61950856 0.685502 prediction 0.452605352831713 Functional Gain - RANBP1 ENSG00000099901 CDS Human protein_coding chr22:20106639 chr22:20106642 nonsynonymous SNV 0.950 3 24 hm5C_associated_SNPs_116821 0 0 1 0 1 RANBP1 chr22:20106672 5'GT 20106672 Upstream 31bp
chr11 88924452 88924452 1 + C T SKCM 88924451 + 88924431 88924471 41 AGGGACCTTTACGGCGTAATCCTGGAAACCATGACAAATCC AGGGACCTTTACGGCGTAATCTTGGAAACCATGACAAATCC < 41bp 0.56951706214546 0.795811727546542 0.3950979 0.15253717 prediction 0.452589330802162 Functional Gain - TYR ENSG00000077498 CDS Human protein_coding chr11:88924451 chr11:88924452 nonsynonymous SNV 0.989 5 22 hm5C_associated_SNPs_116826 1 0 0 0 1 TYR chr11:88924370 3'AG 88924370 Downstream 83bp
chr19 17337555 17337555 1 + C A rs3745163 17337554 + 17337534 17337574 41 ACACGACGCCCCCCGCAGGACCCGCCCATCAGCCCGGAAAC ACACGACGCCCCCCGCAGGACACGCCCATCAGCCCGGAAAC < 41bp 0.471548308686847 0.726293255903784 0.08801833 0.068541646 prediction 0.452586511807568 Functional Gain - OCEL1 ENSG00000099330 CDS Human protein_coding chr19:17337554 chr19:17337555 synonymous SNV . 0 22 hm5C_associated_SNPs_116827 0 0 0 0 1 OCEL1 chr19:17337502 3'AG 17337502 Downstream 54bp
chr6 10726173 10726173 1 + T C UCEC 10726171 + 10726151 10726191 41 TCCCTGGCTGCAGGGCTGCTCTTTGGCAGTCTAGCCGGCCT TCCCTGGCTGCAGGGCTGCTCTCTGGCAGTCTAGCCGGCCT < 41bp 0.606090050196544 0.832379590581892 0.2630747 0.19993213 prediction 0.452579080770695 Functional Gain - TMEM14C ENSG00000111843 CDS Human protein_coding chr6:10726171 chr6:10726173 nonsynonymous SNV 0.139 3 23 hm5C_associated_SNPs_116828 0 0 1 0 2 TMEM14C chr6:10726140 3'AG 10726140 Downstream 34bp
chr6 10726173 10726173 1 + T C UCEC 10726171 + 10726151 10726191 41 TCCCTGGCTGCAGGGCTGCTCTTTGGCAGTCTAGCCGGCCT TCCCTGGCTGCAGGGCTGCTCTCTGGCAGTCTAGCCGGCCT < 41bp 0.606090050196544 0.832379590581892 0.2630747 0.19993213 prediction 0.452579080770695 Functional Gain - TMEM14C ENSG00000111843 CDS Human protein_coding chr6:10726171 chr6:10726173 nonsynonymous SNV 0.139 3 23 hm5C_associated_SNPs_116828 0 0 1 0 2 TMEM14C chr6:10726241 5'GT 10726241 Upstream 69bp
chr12 113312973 113312973 1 + C A rs375690047 113312969 + 113312949 113312989 41 CAGCGCCACCTCAGCCTGGGCAGCCAGGTACCTGCCACTCA CAGCGCCACCTCAGCCTGGGCAGCAAGGTACCTGCCACTCA < 41bp 0.316898207396228 0.726285368564793 0.25271899 0.24976075 prediction 0.452570737129587 Functional Gain - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113312969 chr12:113312973 nonsynonymous SNV 0.961 0 25 hm5C_associated_SNPs_116829 0 0 0 0 2 RPH3A chr12:113312889 3'AG 113312889 Downstream 85bp
chr12 113312973 113312973 1 + C A rs375690047 113312969 + 113312949 113312989 41 CAGCGCCACCTCAGCCTGGGCAGCCAGGTACCTGCCACTCA CAGCGCCACCTCAGCCTGGGCAGCAAGGTACCTGCCACTCA < 41bp 0.316898207396228 0.726285368564793 0.25271899 0.24976075 prediction 0.452570737129587 Functional Gain - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113312969 chr12:113312973 nonsynonymous SNV 0.961 0 25 hm5C_associated_SNPs_116829 0 0 0 0 2 RPH3A chr12:113312975 5'GT 113312975 Upstream 3bp
chr12 120117748 120117748 1 + C A COAD 120117744 + 120117724 120117764 41 TTGTTCCCTCACAGTGTGATCCAGCTTTGCTTCCTGAGCCC TTGTTCCCTCACAGTGTGATCCAGATTTGCTTCCTGAGCCC < 41bp 0.323923508976913 0.726284491094234 0.25126463 0.36120212 prediction 0.452568982188467 Functional Gain - PRKAB1 ENSG00000111725 CDS Human protein_coding chr12:120117744 chr12:120117748 nonsynonymous SNV 0.937 1 25 hm5C_associated_SNPs_116830 0 0 1 0 1 PRKAB1 chr12:120117806 5'GT 120117806 Upstream 59bp
chr12 21331589 21331589 1 + C A LUAD 21331588 + 21331568 21331608 41 TCGTGGAATAGGGGAGACTCCCATAGTACCATTGGGGCTTT TCGTGGAATAGGGGAGACTCCAATAGTACCATTGGGGCTTT < 41bp 0.583616233150859 0.809899804870353 0.036419988 0.118445605 prediction 0.452567143438988 Functional Gain - SLCO1B1 ENSG00000134538 CDS Human protein_coding chr12:21331588 chr12:21331589 synonymous SNV . 0 22 hm5C_associated_SNPs_116832 0 0 0 0 2 SLCO1B1 chr12:21331510 3'AG 21331510 Downstream 80bp
chr12 21331589 21331589 1 + C A LUAD 21331588 + 21331568 21331608 41 TCGTGGAATAGGGGAGACTCCCATAGTACCATTGGGGCTTT TCGTGGAATAGGGGAGACTCCAATAGTACCATTGGGGCTTT < 41bp 0.583616233150859 0.809899804870353 0.036419988 0.118445605 prediction 0.452567143438988 Functional Gain - SLCO1B1 ENSG00000134538 CDS Human protein_coding chr12:21331588 chr12:21331589 synonymous SNV . 0 22 hm5C_associated_SNPs_116832 0 0 0 0 2 SLCO1B1 chr12:21331656 5'GT 21331656 Upstream 68bp
chr2 166229828 166229828 1 + A G COAD 166229825 + 166229805 166229845 41 CACTAAGAGCTCTGAGGCCACTGAGAGCTTTGTCCCGGTTT CACTAAGAGCTCTGAGGCCACTGGGAGCTTTGTCCCGGTTT < 41bp 0.494043034204325 0.726272232924155 0.2036632 0.47725758 prediction 0.452544465848311 Functional Gain - SCN2A ENSG00000136531 CDS Human protein_coding chr2:166229825 chr2:166229828 nonsynonymous SNV 0.990 5 24 hm5C_associated_SNPs_116834 0 0 0 0 1 SCN2A chr2:166229735 3'AG 166229735 Downstream 94bp
chr16 27353578 27353578 1 + C T CESC 27353577 + 27353557 27353597 41 CCAGCTGGTTTTTCTGCTCTCCGAGTAAGCCTGCGCTGGAG CCAGCTGGTTTTTCTGCTCTCTGAGTAAGCCTGCGCTGGAG < 41bp 0.499173768776666 0.726268845123929 0.90652764 0.70347536 prediction 0.452537690247858 Functional Gain - IL4R ENSG00000077238 CDS Human protein_coding chr16:27353577 chr16:27353578 synonymous SNV . 0 22 hm5C_associated_SNPs_116836 0 0 1 0 1 IL4R chr16:27353580 5'GT 27353580 Upstream 3bp
chr1 898117 898117 1 + C T UCEC 898116 + 898096 898136 41 GTGCGGCTGCCCTTGCTGAGCCGCGACTTCCTGCTGGGCCA GTGCGGCTGCCCTTGCTGAGCTGCGACTTCCTGCTGGGCCA < 41bp 0.54974846453568 0.776012125767775 0.21939221 0.1422073 prediction 0.452527322464191 Functional Gain - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:898116 chr1:898117 nonsynonymous SNV 0.986 4 22 hm5C_associated_SNPs_116839 0 0 1 0 1 KLHL17 chr1:898084 3'AG 898084 Downstream 34bp
chr16 8829651 8829651 1 + C A rs77696190 8829647 + 8829627 8829667 41 GCCTGCAGCTTCCAGCACAGCTACCGCCTGCTGGTGCCTGG GCCTGCAGCTTCCAGCACAGCTACAGCCTGCTGGTGCCTGG < 41bp 0.30203512619939 0.726260237717014 0.08074692 0.12096244 prediction 0.452520475434027 Functional Gain - ABAT ENSG00000183044 CDS Human protein_coding chr16:8829647 chr16:8829651 nonsynonymous SNV 0.010 0 25 hm5C_associated_SNPs_116840 0 0 1 0 1 ABAT chr16:8829666 5'GT 8829666 Upstream 16bp
chr1 201289462 201289462 1 + A G STAD 201289459 + 201289439 201289479 41 ACTCAGGGCTCATTGATTCCCTCATGGCCTATGTCCAGAAC ACTCAGGGCTCATTGATTCCCTCGTGGCCTATGTCCAGAAC < 41bp 0.544952710414598 0.771212698003523 0.031373113 0.053061277 prediction 0.452519975177849 Functional Gain - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201289459 chr1:201289462 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_116841 0 0 0 0 2 PKP1 chr1:201289395 3'AG 201289395 Downstream 68bp
chr1 201289462 201289462 1 + A G STAD 201289459 + 201289439 201289479 41 ACTCAGGGCTCATTGATTCCCTCATGGCCTATGTCCAGAAC ACTCAGGGCTCATTGATTCCCTCGTGGCCTATGTCCAGAAC < 41bp 0.544952710414598 0.771212698003523 0.031373113 0.053061277 prediction 0.452519975177849 Functional Gain - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201289459 chr1:201289462 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_116841 0 0 0 0 2 PKP1 chr1:201289509 5'GT 201289509 Upstream 48bp
chr20 60503472 60503472 1 + C A LUAD 60503468 + 60503448 60503488 41 GTGCGGAAGAACTGGACCATCACCCGCCTGAACGGTGAGCC GTGCGGAAGAACTGGACCATCACCAGCCTGAACGGTGAGCC < 41bp 0.331922846425719 0.72625712432117 0.19392708 0.38931173 prediction 0.452514248642339 Functional Gain - CDH4 ENSG00000179242 CDS Human protein_coding chr20:60503468 chr20:60503472 nonsynonymous SNV 0.958 3 25 hm5C_associated_SNPs_116843 0 0 0 0 1 CDH4 chr20:60503481 5'GT 60503481 Upstream 10bp
chr1 205197876 205197876 1 + C T UCEC 205197875 + 205197855 205197895 41 GCGGCGCCCAACCCAGGTCCCCGAAGCAAGCCTCCTGATTT GCGGCGCCCAACCCAGGTCCCTGAAGCAAGCCTCCTGATTT < 41bp 0.510819456666 0.737071639674304 0.3156078 0.16173214 prediction 0.452504366016607 Functional Gain - TMCC2 ENSG00000133069 CDS Human protein_coding chr1:205197875 chr1:205197876 stopgain 1.000 0 22 hm5C_associated_SNPs_116844 0 0 0 0 1 TMCC2 chr1:205197899 5'GT 205197899 Upstream 24bp
chr11 114121088 114121088 1 + C A HNSC 114121087 + 114121067 114121107 41 TAAGCTCTGCCACCAGCGCTCCCGGGACTACTCGGCCATGA TAAGCTCTGCCACCAGCGCTCACGGGACTACTCGGCCATGA < 41bp 0.570112545955362 0.796357315830286 0.35917062 0.82333183 prediction 0.452489539749847 Functional Gain - ZBTB16 ENSG00000109906 CDS Human protein_coding chr11:114121087 chr11:114121088 synonymous SNV . 0 22 hm5C_associated_SNPs_116847 0 0 0 0 1 ZBTB16 chr11:114121048 3'AG 114121048 Downstream 41bp
chr10 104160707 104160707 1 + C T SKCM 104160706 + 104160686 104160726 41 CGCTGCTCGCACCCCCAGCTCCGGGCCAACGTGAACGCTCG CGCTGCTCGCACCCCCAGCTCTGGGCCAACGTGAACGCTCG < 41bp 0.557865206138033 0.784096680419675 0.8081565 0.55423766 prediction 0.452462948563284 Functional Gain - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160706 chr10:104160707 nonsynonymous SNV 0.862 2 22 hm5C_associated_SNPs_116850 0 0 0 0 2 NFKB2 chr10:104160704 3'AG 104160704 Downstream 4bp
chr10 104160707 104160707 1 + C T SKCM 104160706 + 104160686 104160726 41 CGCTGCTCGCACCCCCAGCTCCGGGCCAACGTGAACGCTCG CGCTGCTCGCACCCCCAGCTCTGGGCCAACGTGAACGCTCG < 41bp 0.557865206138033 0.784096680419675 0.8081565 0.55423766 prediction 0.452462948563284 Functional Gain - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160706 chr10:104160707 nonsynonymous SNV 0.862 2 22 hm5C_associated_SNPs_116850 0 0 0 0 2 NFKB2 chr10:104160806 5'GT 104160806 Upstream 100bp
chr3 32180188 32180188 1 + C T LUAD 32180187 + 32180167 32180207 41 ATGAGATCACTGGGAGAGTGCCCAAGAAAGCGCTGGGAATC ATGAGATCACTGGGAGAGTGCTCAAGAAAGCGCTGGGAATC < 41bp 0.584209993560434 0.810441227701443 0.14295813 0.14752296 prediction 0.452462468282018 Functional Gain - GPD1L ENSG00000152642 CDS Human protein_coding chr3:32180187 chr3:32180188 nonsynonymous SNV 0.796 0 22 hm5C_associated_SNPs_116851 0 0 0 0 1 GPD1L chr3:32180219 5'GT 32180219 Upstream 32bp
chr1 18661482 18661482 1 + C A rs35793095 18661478 + 18661458 18661498 41 GGAGAAGGTGGTCCTGGCATCAGGCAACATCTTCCTCAACG GGAGAAGGTGGTCCTGGCATCAGGAAACATCTTCCTCAACG < 41bp 0.701236165106484 0.927462416354913 0.6600258 0.89083076 prediction 0.452452502496858 Functional Gain - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18661478 chr1:18661482 synonymous SNV . 0 25 hm5C_associated_SNPs_116852 0 0 0 0 2 IGSF21 chr1:18661386 3'AG 18661386 Downstream 97bp
chr1 18661482 18661482 1 + C A rs35793095 18661478 + 18661458 18661498 41 GGAGAAGGTGGTCCTGGCATCAGGCAACATCTTCCTCAACG GGAGAAGGTGGTCCTGGCATCAGGAAACATCTTCCTCAACG < 41bp 0.701236165106484 0.927462416354913 0.6600258 0.89083076 prediction 0.452452502496858 Functional Gain - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18661478 chr1:18661482 synonymous SNV . 0 25 hm5C_associated_SNPs_116852 0 0 0 0 2 IGSF21 chr1:18661504 5'GT 18661504 Upstream 23bp
chr1 27268257 27268257 1 + A G LIHC 27268254 + 27268234 27268274 41 TTTGCCCCAGAAAAAGGATGCAGAGAATCATGAGGCCCAGC TTTGCCCCAGAAAAAGGATGCAGGGAATCATGAGGCCCAGC < 41bp 0.485785272048845 0.726224631745251 0.3119141 0.81027484 prediction 0.452449263490502 Functional Gain - NUDC ENSG00000090273 CDS Human protein_coding chr1:27268254 chr1:27268257 nonsynonymous SNV 0.992 0 24 hm5C_associated_SNPs_116853 0 0 1 0 2 NUDC chr1:27268244 3'AG 27268244 Downstream 14bp
chr1 27268257 27268257 1 + A G LIHC 27268254 + 27268234 27268274 41 TTTGCCCCAGAAAAAGGATGCAGAGAATCATGAGGCCCAGC TTTGCCCCAGAAAAAGGATGCAGGGAATCATGAGGCCCAGC < 41bp 0.485785272048845 0.726224631745251 0.3119141 0.81027484 prediction 0.452449263490502 Functional Gain - NUDC ENSG00000090273 CDS Human protein_coding chr1:27268254 chr1:27268257 nonsynonymous SNV 0.992 0 24 hm5C_associated_SNPs_116853 0 0 1 0 2 NUDC chr1:27268309 5'GT 27268309 Upstream 53bp
chr18 46237999 46237999 1 + C T SKCM 46237998 + 46237978 46238018 41 CCCATGACACAGGGCTACCACCCGATGCCCCATGAAGTGGA CCCATGACACAGGGCTACCACTCGATGCCCCATGAAGTGGA < 41bp 0.45436249605537 0.726224615996095 0.08308461 0.9139582 prediction 0.452449231992191 Functional Gain - CTIF ENSG00000134030 CDS Human protein_coding chr18:46237998 chr18:46237999 nonsynonymous SNV 0.972 4 22 hm5C_associated_SNPs_116854 0 0 1 0 2 CTIF chr18:46237990 3'AG 46237990 Downstream 10bp
chr18 46237999 46237999 1 + C T SKCM 46237998 + 46237978 46238018 41 CCCATGACACAGGGCTACCACCCGATGCCCCATGAAGTGGA CCCATGACACAGGGCTACCACTCGATGCCCCATGAAGTGGA < 41bp 0.45436249605537 0.726224615996095 0.08308461 0.9139582 prediction 0.452449231992191 Functional Gain - CTIF ENSG00000134030 CDS Human protein_coding chr18:46237998 chr18:46237999 nonsynonymous SNV 0.972 4 22 hm5C_associated_SNPs_116854 0 0 1 0 2 CTIF chr18:46238066 5'GT 46238066 Upstream 68bp
chr10 30984952 30984952 1 + A G UCEC 30984949 + 30984929 30984969 41 GGAGCGTCAACCTGACGGAACAGAACTCTAACAACAGCGCC GGAGCGTCAACCTGACGGAACAGGACTCTAACAACAGCGCC < 41bp 0.486404568122712 0.726219000716019 0.0412167 0.047616154 prediction 0.452438001432039 Functional Gain - SVILP1 ENSG00000234814 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:30984949 chr10:30984952 . . 0 24 hm5C_associated_SNPs_116857 0 0 0 0 1 SVILP1 chr10:30985006 5'GT 30985006 Upstream 55bp
chr5 55088539 55088539 1 + C T STAD 55088538 + 55088518 55088558 41 TGTTGGATATGGGTTTTGGTCCAGAAATGAAGAAGTTAATT TGTTGGATATGGGTTTTGGTCTAGAAATGAAGAAGTTAATT < 41bp 0.48138169776327 0.726214084350024 0.10384318 0.13178807 prediction 0.452428168700048 Functional Gain - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55088538 chr5:55088539 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_116860 0 0 0 0 2 DDX4 chr5:55088469 3'AG 55088469 Downstream 71bp
chr5 55088539 55088539 1 + C T STAD 55088538 + 55088518 55088558 41 TGTTGGATATGGGTTTTGGTCCAGAAATGAAGAAGTTAATT TGTTGGATATGGGTTTTGGTCTAGAAATGAAGAAGTTAATT < 41bp 0.48138169776327 0.726214084350024 0.10384318 0.13178807 prediction 0.452428168700048 Functional Gain - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55088538 chr5:55088539 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_116860 0 0 0 0 2 DDX4 chr5:55088635 5'GT 55088635 Upstream 97bp
chr1 109780429 109780429 1 + T C CESC 109780427 + 109780407 109780447 41 CAAAGAAGCAGAAGAAGCAACATGAGGGCAGCAAAAAGAAA CAAAGAAGCAGAAGAAGCAACACGAGGGCAGCAAAAAGAAA < 41bp 0.477274887144562 0.726212681635584 0.21757615 0.13396674 prediction 0.452425363271168 Functional Gain - SARS ENSG00000031698 CDS Human protein_coding chr1:109780427 chr1:109780429 synonymous SNV . 0 23 hm5C_associated_SNPs_116861 0 0 1 0 1 SARS chr1:109780353 3'AG 109780353 Downstream 77bp
chr13 111973280 111973280 1 + C T PRAD 111973279 + 111973259 111973299 41 AAGAACTCTCCGCGGCACCTCCTGAAGCAATTCACAGGTAT AAGAACTCTCCGCGGCACCTCTTGAAGCAATTCACAGGTAT < 41bp 0.480139368435827 0.726211199605156 0.17663157 0.2788579 prediction 0.452422399210312 Functional Gain - TEX29 ENSG00000153495 CDS Human protein_coding chr13:111973279 chr13:111973280 synonymous SNV . 0 22 hm5C_associated_SNPs_116864 0 0 0 0 2 TEX29 chr13:111973204 3'AG 111973204 Downstream 77bp
chr13 111973280 111973280 1 + C T PRAD 111973279 + 111973259 111973299 41 AAGAACTCTCCGCGGCACCTCCTGAAGCAATTCACAGGTAT AAGAACTCTCCGCGGCACCTCTTGAAGCAATTCACAGGTAT < 41bp 0.480139368435827 0.726211199605156 0.17663157 0.2788579 prediction 0.452422399210312 Functional Gain - TEX29 ENSG00000153495 CDS Human protein_coding chr13:111973279 chr13:111973280 synonymous SNV . 0 22 hm5C_associated_SNPs_116864 0 0 0 0 2 TEX29 chr13:111973295 5'GT 111973295 Upstream 16bp
chr16 31234251 31234251 1 + C T STAD 31234250 + 31234230 31234270 41 CAGGTGTGGAGGAAGATGTTCCGGGCTCTGATGCCAGGTAC CAGGTGTGGAGGAAGATGTTCTGGGCTCTGATGCCAGGTAC < 41bp 0.53184595355013 0.758056832726486 0.899542 0.8654602 prediction 0.452421758352713 Functional Gain - TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31234250 chr16:31234251 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_116865 0 0 1 0 1 TRIM72 chr16:31234266 5'GT 31234266 Upstream 16bp
chr10 101716912 101716912 1 - G A KICH 101716913 - 101716893 101716933 41 ACTGCAGGCTGGCTGCAGGGCCGAAGCTGCTGGGGCGCACG ACTGCAGGCTGGCTGCAGGGCTGAAGCTGCTGGGGCGCACG < 41bp 0.483033308067701 0.726207753964848 0.24534288 0.32934242 prediction 0.452415507929697 Functional Gain - DNMBP ENSG00000107554 CDS Human protein_coding chr10:101716913 chr10:101716912 stopgain 1.000 1 22 hm5C_associated_SNPs_116867 0 0 1 0 1 DNMBP chr10:101716962 3'AG 101716962 Downstream 51bp
chr3 37061951 37061951 1 + C G OV 37061950 + 37061930 37061970 41 TTCCTCCAGGATGTACTTCACCCAGGTCAGGGCGCTTCTCA TTCCTCCAGGATGTACTTCACGCAGGTCAGGGCGCTTCTCA < 41bp 0.608738014533766 0.834943933700228 0.04911059 0.47297034 prediction 0.452411838332925 Functional Gain - MLH1 ENSG00000076242 CDS Human protein_coding chr3:37061950 chr3:37061951 synonymous SNV . 0 22 hm5C_associated_SNPs_116868 0 0 0 0 1 MLH1 chr3:37061954 5'GT 37061954 Upstream 4bp
chr2 74742838 74742838 1 + C T COAD 74742837 + 74742817 74742857 41 CCCCTCCGAAGCGGAAGAAGCCGCGCACGTCCTTCTCCCGC CCCCTCCGAAGCGGAAGAAGCTGCGCACGTCCTTCTCCCGC < 41bp 0.55366457785727 0.779868625787142 0.4449064 0.30531028 prediction 0.452408095859744 Functional Gain - TLX2 ENSG00000115297 CDS Human protein_coding chr2:74742837 chr2:74742838 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_116869 0 0 0 0 1 TLX2 chr2:74742760 3'AG 74742760 Downstream 79bp
chr4 1373906 1373906 1 + A G STAD 1373903 + 1373883 1373923 41 AGTGGTCAATGCCGACATCTCCGAGATGCTCCGGAGCCGCC AGTGGTCAATGCCGACATCTCCGGGATGCTCCGGAGCCGCC < 41bp 0.576802356744687 0.803001627292994 0.88892275 0.9211648 prediction 0.452398541096613 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1373903 chr4:1373906 nonsynonymous SNV 0.476 1 24 hm5C_associated_SNPs_116870 0 0 0 0 1 UVSSA chr4:1373835 3'AG 1373835 Downstream 72bp
chr15 91354520 91354520 1 + C T rs56009845 91354519 + 91354499 91354539 41 GGAGCTCGACGAGGAAATACCCGTATCTTCCCACTACTTTG GGAGCTCGACGAGGAAATACCTGTATCTTCCCACTACTTTG < 41bp 0.47425316044286 0.726193020642695 0.2178807 0.42412233 prediction 0.452386041285389 Functional Gain - BLM ENSG00000197299 CDS Human protein_coding chr15:91354519 chr15:91354520 synonymous SNV . 0 22 hm5C_associated_SNPs_116871 2 0 1 0 1 BLM chr15:91354435 3'AG 91354435 Downstream 86bp
chr15 69328113 69328113 1 + C G LUAD 69328109 + 69328089 69328129 41 TGTTTCCAGTACTCCAGGCTCAGGCGGAGGCCAGCCCTTTC TGTTTCCAGTACTCCAGGCTCAGGGGGAGGCCAGCCCTTTC < 41bp 0.642971238480792 0.869158697789274 0.8184487 0.9268167 prediction 0.452374918616964 Functional Gain - NOX5 ENSG00000255346 CDS Human protein_coding chr15:69328109 chr15:69328113 nonsynonymous SNV 0.012 1 25 hm5C_associated_SNPs_116872 0 0 0 0 1 NOX5 chr15:69328098 3'AG 69328098 Downstream 16bp
chr3 119331874 119331874 1 + C T rs2272270 119331873 + 119331853 119331893 41 TCTTCTCACAGGCCTGGACCCCGCTGGACCTGAGTACACCA TCTTCTCACAGGCCTGGACCCTGCTGGACCTGAGTACACCA < 41bp 0.476239956503136 0.726185809962531 0.25151843 0.42653853 prediction 0.452371619925061 Functional Gain - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119331873 chr3:119331874 synonymous SNV . 0 22 hm5C_associated_SNPs_116873 0 0 0 0 2 PLA1A chr3:119331864 3'AG 119331864 Downstream 11bp
chr3 119331874 119331874 1 + C T rs2272270 119331873 + 119331853 119331893 41 TCTTCTCACAGGCCTGGACCCCGCTGGACCTGAGTACACCA TCTTCTCACAGGCCTGGACCCTGCTGGACCTGAGTACACCA < 41bp 0.476239956503136 0.726185809962531 0.25151843 0.42653853 prediction 0.452371619925061 Functional Gain - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119331873 chr3:119331874 synonymous SNV . 0 22 hm5C_associated_SNPs_116873 0 0 0 0 2 PLA1A chr3:119331965 5'GT 119331965 Upstream 92bp
chr2 169417810 169417810 1 + C G HNSC 169417806 + 169417786 169417826 41 CGCAATCAGGAGAAGCCAAGCACGCTGACGAGGTTCTGTGA CGCAATCAGGAGAAGCCAAGCACGGTGACGAGGTTCTGTGA < 41bp 0.449215347888029 0.726184343820413 0.46213144 0.8711194 prediction 0.452368687640826 Functional Gain - CERS6 ENSG00000172292 CDS Human protein_coding chr2:169417806 chr2:169417810 nonsynonymous SNV 0.977 2 25 hm5C_associated_SNPs_116874 0 0 1 0 1 CERS6 chr2:169417832 5'GT 169417832 Upstream 23bp
chr11 62189789 62189789 1 + C A LGG 62189788 + 62189768 62189808 41 CTGCCATGGAACTTTTCAGCCCTGATCAAGACATGAGGGAG CTGCCATGGAACTTTTCAGCCATGATCAAGACATGAGGGAG < 41bp 0.458169228064642 0.726182036459352 0.10874599 0.16067001 prediction 0.452364072918703 Functional Gain - SCGB1A1 ENSG00000149021;ENSG00000255446 exonic;splicing Human protein_coding chr11:62189788 chr11:62189789 nonsynonymous SNV 0.060 4 22 hm5C_associated_SNPs_116875 0 0 0 0 2 SCGB1A1 chr11:62189693 3'AG 62189693 Downstream 97bp
chr11 62189789 62189789 1 + C A LGG 62189788 + 62189768 62189808 41 CTGCCATGGAACTTTTCAGCCCTGATCAAGACATGAGGGAG CTGCCATGGAACTTTTCAGCCATGATCAAGACATGAGGGAG < 41bp 0.458169228064642 0.726182036459352 0.10874599 0.16067001 prediction 0.452364072918703 Functional Gain - SCGB1A1 ENSG00000149021;ENSG00000255446 exonic;splicing Human protein_coding chr11:62189788 chr11:62189789 nonsynonymous SNV 0.060 4 22 hm5C_associated_SNPs_116875 0 0 0 0 2 SCGB1A1 chr11:62189880 5'GT 62189880 Upstream 92bp
chr6 28119655 28119655 1 + C T SKCM 28119654 + 28119634 28119674 41 TCCCAGAGTCCTACTCGTTCCCAGAAAGGAAGTTCTGGAGA TCCCAGAGTCCTACTCGTTCCTAGAAAGGAAGTTCTGGAGA < 41bp 0.584533871422216 0.810711403841223 0.23474348 0.36142892 prediction 0.452355064838015 Functional Gain - ZKSCAN8 ENSG00000198315 CDS Human protein_coding chr6:28119654 chr6:28119655 stopgain 0.999 1 22 hm5C_associated_SNPs_116876 0 0 1 0 2 ZKSCAN8 chr6:28119623 3'AG 28119623 Downstream 33bp
chr6 28119655 28119655 1 + C T SKCM 28119654 + 28119634 28119674 41 TCCCAGAGTCCTACTCGTTCCCAGAAAGGAAGTTCTGGAGA TCCCAGAGTCCTACTCGTTCCTAGAAAGGAAGTTCTGGAGA < 41bp 0.584533871422216 0.810711403841223 0.23474348 0.36142892 prediction 0.452355064838015 Functional Gain - ZKSCAN8 ENSG00000198315 CDS Human protein_coding chr6:28119654 chr6:28119655 stopgain 0.999 1 22 hm5C_associated_SNPs_116876 0 0 1 0 2 ZKSCAN8 chr6:28119714 5'GT 28119714 Upstream 60bp
chr22 37325762 37325762 1 + C T BRCA 37325761 + 37325741 37325781 41 CCCAGCAGCACCTACGTGGCCCGAGTACGGACCCGCCTGGC CCCAGCAGCACCTACGTGGCCTGAGTACGGACCCGCCTGGC < 41bp 0.546734602763104 0.772912043523567 0.45788965 0.18033883 prediction 0.452354881520925 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37325761 chr22:37325762 stopgain 0.087 0 22 hm5C_associated_SNPs_116877 0 0 0 0 2 CSF2RB chr22:37325681 3'AG 37325681 Downstream 82bp
chr22 37325762 37325762 1 + C T BRCA 37325761 + 37325741 37325781 41 CCCAGCAGCACCTACGTGGCCCGAGTACGGACCCGCCTGGC CCCAGCAGCACCTACGTGGCCTGAGTACGGACCCGCCTGGC < 41bp 0.546734602763104 0.772912043523567 0.45788965 0.18033883 prediction 0.452354881520925 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37325761 chr22:37325762 stopgain 0.087 0 22 hm5C_associated_SNPs_116877 0 0 0 0 2 CSF2RB chr22:37325849 5'GT 37325849 Upstream 88bp
chr12 111057747 111057747 1 + A G rs140230455 111057744 + 111057724 111057764 41 TTCAGTGTCTTTTCTGCCTGCTCAGTTCCAGTTGTCACGTA TTCAGTGTCTTTTCTGCCTGCTCGGTTCCAGTTGTCACGTA < 41bp 0.528501120842118 0.754677414068175 0.12141526 0.21939138 prediction 0.452352586452114 Functional Gain - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111057744 chr12:111057747 synonymous SNV . 0 24 hm5C_associated_SNPs_116878 3 0 1 2 1 TCTN1 chr12:111057761 5'GT 111057761 Upstream 15bp
chr1 150235454 150235454 1 + A G UCEC 150235451 + 150235431 150235471 41 TTCTCCCCAGATCAGAAGACCTCAGTGCCTCCCTTCAACCT TTCTCCCCAGATCAGAAGACCTCGGTGCCTCCCTTCAACCT < 41bp 0.473587375265021 0.726170465090764 0.090432554 0.13023871 prediction 0.452340930181528 Functional Gain - CA14 ENSG00000118298 CDS Human protein_coding chr1:150235451 chr1:150235454 synonymous SNV . 0 24 hm5C_associated_SNPs_116880 0 0 0 0 1 CA14 chr1:150235441 3'AG 150235441 Downstream 14bp
chr22 41489065 41489065 1 + A G LIHC 41489062 + 41489042 41489082 41 TCAGCCAAGCGGCCTAAACTCTCATCTCCGGCCCTCTCGGC TCAGCCAAGCGGCCTAAACTCTCGTCTCCGGCCCTCTCGGC < 41bp 0.48982171434085 0.726167373894904 0.36725384 0.63272834 prediction 0.452334747789809 Functional Gain - EP300 ENSG00000100393 CDS Human protein_coding chr22:41489062 chr22:41489065 synonymous SNV . 0 24 hm5C_associated_SNPs_116881 0 0 1 0 1 EP300 chr22:41489102 5'GT 41489102 Upstream 38bp
chrX 38226613 38226613 1 + C A LIHC 38226612 + 38226592 38226632 41 TCTCACTCTAAAAAACTTTACCGGAGAAGAAATTAAATATA TCTCACTCTAAAAAACTTTACAGGAGAAGAAATTAAATATA < 41bp 0.586935327031042 0.813100280214404 0.48166323 0.32047153 prediction 0.452329906366723 Functional Gain - OTC ENSG00000036473 CDS Human protein_coding chrX:38226612 chrX:38226613 synonymous SNV . 0 22 hm5C_associated_SNPs_116883 0 0 0 0 2 OTC chrX:38226544 3'AG 38226544 Downstream 70bp
chrX 38226613 38226613 1 + C A LIHC 38226612 + 38226592 38226632 41 TCTCACTCTAAAAAACTTTACCGGAGAAGAAATTAAATATA TCTCACTCTAAAAAACTTTACAGGAGAAGAAATTAAATATA < 41bp 0.586935327031042 0.813100280214404 0.48166323 0.32047153 prediction 0.452329906366723 Functional Gain - OTC ENSG00000036473 CDS Human protein_coding chrX:38226612 chrX:38226613 synonymous SNV . 0 22 hm5C_associated_SNPs_116883 0 0 0 0 2 OTC chrX:38226682 5'GT 38226682 Upstream 70bp
chr16 81929430 81929430 1 + C A SKCM 81929429 + 81929409 81929449 41 TAGTGGACTGCTGGGACGGGCCCGATGGGAAGCCGGTCATC TAGTGGACTGCTGGGACGGGCACGATGGGAAGCCGGTCATC < 41bp 0.587146992194276 0.813308958026199 0.51473844 0.7763567 prediction 0.452323931663845 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81929429 chr16:81929430 nonsynonymous SNV 0.896 4 22 hm5C_associated_SNPs_116884 0 0 0 0 1 PLCG2 chr16:81929412 3'AG 81929412 Downstream 19bp
chrX 114883835 114883835 1 + T C STAD 114883833 + 114883813 114883853 41 GAAGTAAAGCCCAAGATGGTCATGACTGTGTTTGCATGTTT GAAGTAAAGCCCAAGATGGTCACGACTGTGTTTGCATGTTT < 41bp 0.454234704373706 0.726161382280876 0.17955229 0.11034641 prediction 0.452322764561752 Functional Gain - PLS3 ENSG00000102024 CDS Human protein_coding chrX:114883833 chrX:114883835 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_116886 0 0 1 0 1 PLS3 chrX:114883749 3'AG 114883749 Downstream 87bp
chr19 13084239 13084239 1 + C T GBM 13084238 + 13084218 13084258 41 GGCTGCTCAGCCATACGCCTCCGAAATCATCTGTGCTTTGG GGCTGCTCAGCCATACGCCTCTGAAATCATCTGTGCTTTGG < 41bp 0.522519546441412 0.748680719808833 0.30198404 0.20297298 prediction 0.452322346734841 Functional Gain - DAND5 ENSG00000179284 CDS Human protein_coding chr19:13084238 chr19:13084239 stopgain 0.009 0 22 hm5C_associated_SNPs_116887 0 0 0 0 1 DAND5 chr19:13084203 3'AG 13084203 Downstream 37bp
chr9 382646 382646 1 + C A rs116523732 382645 + 382625 382665 41 AGACCTCGCGGGGACACACTCCGCAGCAGACGAGGAAGTGA AGACCTCGCGGGGACACACTCAGCAGCAGACGAGGAAGTGA < 41bp 0.548082487172094 0.774240494108955 0.71101 0.91826665 prediction 0.452316013873722 Functional Gain - DOCK8 ENSG00000107099 CDS Human protein_coding chr9:382645 chr9:382646 synonymous SNV . 0 22 hm5C_associated_SNPs_116890 0 0 0 0 1 DOCK8 chr9:382685 5'GT 382685 Upstream 40bp
chr6 4952583 4952583 1 + C T rs150165899 4952582 + 4952562 4952602 41 GGTCTCCCAGGTGTTTTGGCCCGGGACGTTCACTCAGGAAG GGTCTCCCAGGTGTTTTGGCCTGGGACGTTCACTCAGGAAG < 41bp 0.550316805027097 0.776464914432336 0.9009753 0.87180305 prediction 0.45229621881048 Functional Gain - CDYL ENSG00000153046 CDS Human protein_coding chr6:4952582 chr6:4952583 synonymous SNV . 0 22 hm5C_associated_SNPs_116895 0 0 1 0 2 CDYL chr6:4952500 3'AG 4952500 Downstream 84bp
chr6 4952583 4952583 1 + C T rs150165899 4952582 + 4952562 4952602 41 GGTCTCCCAGGTGTTTTGGCCCGGGACGTTCACTCAGGAAG GGTCTCCCAGGTGTTTTGGCCTGGGACGTTCACTCAGGAAG < 41bp 0.550316805027097 0.776464914432336 0.9009753 0.87180305 prediction 0.45229621881048 Functional Gain - CDYL ENSG00000153046 CDS Human protein_coding chr6:4952582 chr6:4952583 synonymous SNV . 0 22 hm5C_associated_SNPs_116895 0 0 1 0 2 CDYL chr6:4952643 5'GT 4952643 Upstream 61bp
chrX 22094543 22094543 1 + C T LGG 22094542 + 22094522 22094562 41 AATCAGTAGAAGGCGGGACACCGAAGCCATACAGAAAGCCA AATCAGTAGAAGGCGGGACACTGAAGCCATACAGAAAGCCA < 41bp 0.483124819280721 0.72614543942657 0.13885584 0.3532881 prediction 0.45229087885314 Functional Gain - PHEX ENSG00000102174 CDS Human protein_coding chrX:22094542 chrX:22094543 synonymous SNV . 0 22 hm5C_associated_SNPs_116896 0 0 0 0 1 PHEX chrX:22094506 3'AG 22094506 Downstream 38bp
chr7 142568117 142568117 1 + C T COAD 142568116 + 142568096 142568136 41 GCTGCATTTGACAAGATGATCCGCAAGCCAGATACCCTGCA GCTGCATTTGACAAGATGATCTGCAAGCCAGATACCCTGCA < 41bp 0.582832716135659 0.808974906109092 0.3643995 0.5929754 prediction 0.452284379946867 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142568116 chr7:142568117 nonsynonymous SNV 0.940 5 22 hm5C_associated_SNPs_116897 0 0 0 0 1 EPHB6 chr7:142568160 5'GT 142568160 Upstream 44bp
chr8 145582294 145582294 1 + C A rs115940535 145582290 + 145582270 145582310 41 GGTGAGTCGGGTCGTGGCTGCTGCCGGGTCCTGCGCGCTCC GGTGAGTCGGGTCGTGGCTGCTGCAGGGTCCTGCGCGCTCC < 41bp 0.676508538044354 0.902650278706777 0.25536138 0.69296896 prediction 0.452283481324846 Functional Gain - SLC52A2 ENSG00000185803 UTR5 Human protein_coding chr8:145582290 chr8:145582294 . . 0 25 hm5C_associated_SNPs_116898 0 0 1 0 1 SLC52A2 chr8:145582318 5'GT 145582318 Upstream 25bp
chr12 6636077 6636077 1 + C T SKCM 6636076 + 6636056 6636096 41 GAGGAGTCCCCCGCAATGCTCCCCACTTTCCTGTTGATGAA GAGGAGTCCCCCGCAATGCTCTCCACTTTCCTGTTGATGAA < 41bp 0.446826230618338 0.72614019512015 0.032207042 0.9331156 prediction 0.452280390240301 Functional Gain - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6636076 chr12:6636077 nonsynonymous SNV 0.987 1 22 hm5C_associated_SNPs_116899 0 0 1 0 1 NCAPD2 chr12:6636057 3'AG 6636057 Downstream 21bp
chr10 43597792 43597792 1 + C A LUSC 43597791 + 43597771 43597811 41 ACCTGACTTCTCTCTGCAGACCGCGGCTTTCCCCTGCTCAC ACCTGACTTCTCTCTGCAGACAGCGGCTTTCCCCTGCTCAC < 41bp 0.45428098109494 0.726137712417729 0.62911665 0.84246135 prediction 0.452275424835457 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43597791 chr10:43597792 nonsynonymous SNV 0.054 0 22 hm5C_associated_SNPs_116901 0 0 0 0 1 RET chr10:43597790 3'AG 43597790 Downstream 3bp
chr1 202273709 202273709 1 + C T PAAD 202273708 + 202273688 202273728 41 ACCCTGACCCGCGCAGGCATCCGGCTGCTCCCATCGGGGAT ACCCTGACCCGCGCAGGCATCTGGCTGCTCCCATCGGGGAT < 41bp 0.55468091953475 0.780815362765767 0.78945297 0.45392692 prediction 0.452268886462033 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202273708 chr1:202273709 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_116902 0 0 0 0 2 LGR6 chr1:202273687 3'AG 202273687 Downstream 23bp
chr1 202273709 202273709 1 + C T PAAD 202273708 + 202273688 202273728 41 ACCCTGACCCGCGCAGGCATCCGGCTGCTCCCATCGGGGAT ACCCTGACCCGCGCAGGCATCTGGCTGCTCCCATCGGGGAT < 41bp 0.55468091953475 0.780815362765767 0.78945297 0.45392692 prediction 0.452268886462033 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202273708 chr1:202273709 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_116902 0 0 0 0 2 LGR6 chr1:202273758 5'GT 202273758 Upstream 50bp
chr21 47349907 47349907 1 + C A BLCA 47349906 + 47349886 47349926 41 GACAGACCAACCCCGCTTTCCCCGGTACGTACCCAGCCCTT GACAGACCAACCCCGCTTTCCACGGTACGTACCCAGCCCTT < 41bp 0.576471396272569 0.802599583983855 0.267742 0.5262531 prediction 0.452256375422572 Functional Gain - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47349906 chr21:47349907 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_116906 0 0 0 0 3 PCBP3 chr21:47349831 3'AG 47349831 Downstream 77bp
chr21 47349907 47349907 1 + C A BLCA 47349906 + 47349886 47349926 41 GACAGACCAACCCCGCTTTCCCCGGTACGTACCCAGCCCTT GACAGACCAACCCCGCTTTCCACGGTACGTACCCAGCCCTT < 41bp 0.576471396272569 0.802599583983855 0.267742 0.5262531 prediction 0.452256375422572 Functional Gain - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47349906 chr21:47349907 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_116906 0 0 0 0 3 PCBP3 chr21:47349834 3'AG 47349834 Downstream 74bp
chr21 47349907 47349907 1 + C A BLCA 47349906 + 47349886 47349926 41 GACAGACCAACCCCGCTTTCCCCGGTACGTACCCAGCCCTT GACAGACCAACCCCGCTTTCCACGGTACGTACCCAGCCCTT < 41bp 0.576471396272569 0.802599583983855 0.267742 0.5262531 prediction 0.452256375422572 Functional Gain - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47349906 chr21:47349907 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_116906 0 0 0 0 3 PCBP3 chr21:47349909 5'GT 47349909 Upstream 3bp
chr1 180832984 180832984 1 + C T COAD 180832983 + 180832963 180833003 41 GCTGGAGAGAACACTTTCCTCCGGGAAGAGATTGTATACCC GCTGGAGAGAACACTTTCCTCTGGGAAGAGATTGTATACCC < 41bp 0.535059349591974 0.761177886770567 0.33826673 0.23430139 prediction 0.452237074357186 Functional Gain - XPR1 ENSG00000143324 CDS Human protein_coding chr1:180832983 chr1:180832984 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_116909 0 0 1 0 1 XPR1 chr1:180833010 5'GT 180833010 Upstream 27bp
chrX 152914786 152914786 1 + C T SKCM 152914785 + 152914765 152914805 41 CGCCGGTGCCCGGTCCAGTGCCCGTGGTGGGGTTGGGCAGC CGCCGGTGCCCGGTCCAGTGCTCGTGGTGGGGTTGGGCAGC < 41bp 0.531065599111796 0.757175613760836 0.24178997 0.26578337 prediction 0.452220029298081 Functional Gain - DUSP9 ENSG00000130829 CDS Human protein_coding chrX:152914785 chrX:152914786 nonsynonymous SNV 0.224 0 22 hm5C_associated_SNPs_116911 0 0 1 0 1 DUSP9 chrX:152914687 3'AG 152914687 Downstream 100bp
chr4 15063859 15063859 1 + T A HNSC 15063855 + 15063835 15063875 41 CCATTAGTGCTCGGTTTGTTCAGCTTCAGCATGGTGATATT CCATTAGTGCTCGGTTTGTTCAGCATCAGCATGGTGATATT < 41bp 0.398433904596816 0.72610882856099 0.10397062 0.114399135 prediction 0.452217657121981 Functional Gain - CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15063855 chr4:15063859 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_116913 0 0 1 0 1 CPEB2 chr4:15063884 5'GT 15063884 Upstream 26bp
chr19 50905094 50905094 1 + C T SKCM 50905093 + 50905073 50905113 41 CGCGGCTCCGTGCCTGTGCTCCGCGCCTTCGGGGTCACCGA CGCGGCTCCGTGCCTGTGCTCTGCGCCTTCGGGGTCACCGA < 41bp 0.550780287547874 0.776879317976761 0.38982072 0.19505742 prediction 0.452198060857774 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905093 chr19:50905094 nonsynonymous SNV 0.007 3 22 hm5C_associated_SNPs_116914 1 0 1 0 2 POLD1 chr19:50905035 3'AG 50905035 Downstream 60bp
chr19 50905094 50905094 1 + C T SKCM 50905093 + 50905073 50905113 41 CGCGGCTCCGTGCCTGTGCTCCGCGCCTTCGGGGTCACCGA CGCGGCTCCGTGCCTGTGCTCTGCGCCTTCGGGGTCACCGA < 41bp 0.550780287547874 0.776879317976761 0.38982072 0.19505742 prediction 0.452198060857774 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905093 chr19:50905094 nonsynonymous SNV 0.007 3 22 hm5C_associated_SNPs_116914 1 0 1 0 2 POLD1 chr19:50905181 5'GT 50905181 Upstream 88bp
chr19 51294984 51294984 1 + C T rs74407135 51294983 + 51294963 51295003 41 CAACCTTGCCGGGCTGTTTCCCGAGGCTGCTCCAGGGAGCC CAACCTTGCCGGGCTGTTTCCTGAGGCTGCTCCAGGGAGCC < 41bp 0.516165790299841 0.74226319790088 0.92922056 0.90883374 prediction 0.452194815202079 Functional Gain - ACPT ENSG00000142513 CDS Human protein_coding chr19:51294983 chr19:51294984 synonymous SNV . 0 22 hm5C_associated_SNPs_116915 0 0 0 0 2 ACPT chr19:51294913 3'AG 51294913 Downstream 72bp
chr19 51294984 51294984 1 + C T rs74407135 51294983 + 51294963 51295003 41 CAACCTTGCCGGGCTGTTTCCCGAGGCTGCTCCAGGGAGCC CAACCTTGCCGGGCTGTTTCCTGAGGCTGCTCCAGGGAGCC < 41bp 0.516165790299841 0.74226319790088 0.92922056 0.90883374 prediction 0.452194815202079 Functional Gain - ACPT ENSG00000142513 CDS Human protein_coding chr19:51294983 chr19:51294984 synonymous SNV . 0 22 hm5C_associated_SNPs_116915 0 0 0 0 2 ACPT chr19:51295059 5'GT 51295059 Upstream 76bp
chr19 13084298 13084298 1 + C T SKCM 13084297 + 13084277 13084317 41 CATCCCTGGCTCGGACCCCACCCCACTAGTCCTGTGCAACA CATCCCTGGCTCGGACCCCACTCCACTAGTCCTGTGCAACA < 41bp 0.580598550155591 0.806693899536916 0.26092196 0.95498383 prediction 0.452190698762649 Functional Gain - DAND5 ENSG00000179284 CDS Human protein_coding chr19:13084297 chr19:13084298 synonymous SNV . 0 22 hm5C_associated_SNPs_116916 0 0 0 0 1 DAND5 chr19:13084203 3'AG 13084203 Downstream 96bp
chr10 96443664 96443664 1 + C T SKCM 96443663 + 96443643 96443683 41 AGCTCTGGAAGAGGGAGGCTCCCGTCTGGCCCCACTCCTCT AGCTCTGGAAGAGGGAGGCTCTCGTCTGGCCCCACTCCTCT < 41bp 0.502069331025417 0.728158675201767 0.17055464 0.3690466 prediction 0.452178688352699 Functional Gain - CYP2C18 ENSG00000108242 CDS Human protein_coding chr10:96443663 chr10:96443664 nonsynonymous SNV 0.002 4 22 hm5C_associated_SNPs_116918 0 0 0 0 1 CYP2C18 chr10:96443744 5'GT 96443744 Upstream 81bp
chrX 13779284 13779284 1 + A G LIHC 13779281 + 13779261 13779301 41 CATCACCCACTGAGTCTAGGCACAGCCTCTCCATCCCTCCT CATCACCCACTGAGTCTAGGCACGGCCTCTCCATCCCTCCT < 41bp 0.551576330302639 0.777662868249005 0.0013362169 0.0068359077 prediction 0.452173075892732 Functional Gain - OFD1 ENSG00000046651 CDS Human protein_coding chrX:13779281 chrX:13779284 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_116919 0 0 1 0 2 OFD1 chrX:13779204 3'AG 13779204 Downstream 81bp
chrX 13779284 13779284 1 + A G LIHC 13779281 + 13779261 13779301 41 CATCACCCACTGAGTCTAGGCACAGCCTCTCCATCCCTCCT CATCACCCACTGAGTCTAGGCACGGCCTCTCCATCCCTCCT < 41bp 0.551576330302639 0.777662868249005 0.0013362169 0.0068359077 prediction 0.452173075892732 Functional Gain - OFD1 ENSG00000046651 CDS Human protein_coding chrX:13779281 chrX:13779284 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_116919 0 0 1 0 2 OFD1 chrX:13779330 5'GT 13779330 Upstream 47bp
chr10 134165223 134165223 1 + C A LIHC 134165222 + 134165202 134165242 41 GCGGCGGCGCTCCGAGAGCTCCAGGAGAAGCAGGCTCTGAT GCGGCGGCGCTCCGAGAGCTCAAGGAGAAGCAGGCTCTGAT < 41bp 0.585904504770301 0.811987295245857 0.8765756 0.8883871 prediction 0.452165580951113 Functional Gain - LRRC27 ENSG00000148814 CDS Human protein_coding chr10:134165222 chr10:134165223 nonsynonymous SNV 0.232 0 22 hm5C_associated_SNPs_116920 0 0 0 0 1 LRRC27 chr10:134165257 5'GT 134165257 Upstream 35bp
chr19 49867985 49867985 1 + C T SKCM 49867984 + 49867964 49868004 41 ACAGGCCTCCAGAGCCTACTCCAAGGCTTCAGCCGACTTTT ACAGGCCTCCAGAGCCTACTCTAAGGCTTCAGCCGACTTTT < 41bp 0.488454043148806 0.726080387671297 0.21170712 0.15723571 prediction 0.452160775342594 Functional Gain - DKKL1 ENSG00000104901 CDS Human protein_coding chr19:49867984 chr19:49867985 stopgain 0.438 1 22 hm5C_associated_SNPs_116921 0 0 0 0 1 DKKL1 chr19:49868011 5'GT 49868011 Upstream 27bp
chr19 35512877 35512877 1 + C A rs180984713 35512876 + 35512856 35512896 41 CTCCCTCAGCTCCCGCTTCTCCGAACCATCTGTGGACCAGG CTCCCTCAGCTCCCGCTTCTCAGAACCATCTGTGGACCAGG < 41bp 0.600738421366802 0.82681484980765 0.206377 0.64347726 prediction 0.452152856881695 Functional Gain - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35512876 chr19:35512877 synonymous SNV . 0 22 hm5C_associated_SNPs_116922 0 0 1 0 2 GRAMD1A chr19:35512855 3'AG 35512855 Downstream 23bp
chr19 35512877 35512877 1 + C A rs180984713 35512876 + 35512856 35512896 41 CTCCCTCAGCTCCCGCTTCTCCGAACCATCTGTGGACCAGG CTCCCTCAGCTCCCGCTTCTCAGAACCATCTGTGGACCAGG < 41bp 0.600738421366802 0.82681484980765 0.206377 0.64347726 prediction 0.452152856881695 Functional Gain - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35512876 chr19:35512877 synonymous SNV . 0 22 hm5C_associated_SNPs_116922 0 0 1 0 2 GRAMD1A chr19:35512942 5'GT 35512942 Upstream 66bp
chr1 15807668 15807668 1 + C G BLCA 15807667 + 15807647 15807687 41 CTGATAGCCAACAGCTGGGTCCTGACGGCTGCCCACTGCAT CTGATAGCCAACAGCTGGGTCGTGACGGCTGCCCACTGCAT < 41bp 0.408515952030808 0.726076423635992 0.3039663 0.6164383 prediction 0.452152847271985 Functional Gain - CELA2B ENSG00000215704 CDS Human protein_coding chr1:15807667 chr1:15807668 nonsynonymous SNV 0.835 1 22 hm5C_associated_SNPs_116923 0 0 0 0 2 CELA2B chr1:15807593 3'AG 15807593 Downstream 76bp
chr1 15807668 15807668 1 + C G BLCA 15807667 + 15807647 15807687 41 CTGATAGCCAACAGCTGGGTCCTGACGGCTGCCCACTGCAT CTGATAGCCAACAGCTGGGTCGTGACGGCTGCCCACTGCAT < 41bp 0.408515952030808 0.726076423635992 0.3039663 0.6164383 prediction 0.452152847271985 Functional Gain - CELA2B ENSG00000215704 CDS Human protein_coding chr1:15807667 chr1:15807668 nonsynonymous SNV 0.835 1 22 hm5C_associated_SNPs_116923 0 0 0 0 2 CELA2B chr1:15807690 5'GT 15807690 Upstream 23bp
chr2 27257108 27257108 1 + C T UCEC 27257107 + 27257087 27257127 41 AACCAGAAGCAGGGCCGCTTCCGCAGCCTGGAGGAAGCACT AACCAGAAGCAGGGCCGCTTCTGCAGCCTGGAGGAAGCACT < 41bp 0.60228251448463 0.82835641979611 0.9027727 0.52614063 prediction 0.452147810622961 Functional Gain - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27257107 chr2:27257108 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_116924 0 0 1 0 1 TMEM214 chr2:27257134 5'GT 27257134 Upstream 27bp
chr2 152293375 152293375 1 + C T READ 152293374 + 152293354 152293394 41 GTACGGAGCCCCGGGAACTCCCCGAATGAACCTGAGTTCGA GTACGGAGCCCCGGGAACTCCTCGAATGAACCTGAGTTCGA < 41bp 0.593500364032761 0.819572657321276 0.31586635 0.9273029 prediction 0.45214458657703 Functional Gain - RIF1 ENSG00000080345 CDS Human protein_coding chr2:152293374 chr2:152293375 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_116926 0 0 1 0 1 RIF1 chr2:152293341 3'AG 152293341 Downstream 35bp
chr1 32680480 32680480 1 + C A UCEC 32680479 + 32680459 32680499 41 CATCTGCTTTCTATGCCAGACCCCAGCAGACCATTCAGCCA CATCTGCTTTCTATGCCAGACACCAGCAGACCATTCAGCCA < 41bp 0.469828367994617 0.726062202852035 0.03872648 0.026997954 prediction 0.452124405704069 Functional Gain - DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32680479 chr1:32680480 nonsynonymous SNV 0.862 1 22 hm5C_associated_SNPs_116930 0 0 0 0 2 DCDC2B chr1:32680398 3'AG 32680398 Downstream 83bp
chr1 32680480 32680480 1 + C A UCEC 32680479 + 32680459 32680499 41 CATCTGCTTTCTATGCCAGACCCCAGCAGACCATTCAGCCA CATCTGCTTTCTATGCCAGACACCAGCAGACCATTCAGCCA < 41bp 0.469828367994617 0.726062202852035 0.03872648 0.026997954 prediction 0.452124405704069 Functional Gain - DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32680479 chr1:32680480 nonsynonymous SNV 0.862 1 22 hm5C_associated_SNPs_116930 0 0 0 0 2 DCDC2B chr1:32680533 5'GT 32680533 Upstream 54bp
chr19 55592649 55592649 1 + C T STAD 55592648 + 55592628 55592668 41 GCTCGCCCGCCGCTGAGACCCCGCCCCTGCAGCGCCGCCCG GCTCGCCCGCCGCTGAGACCCTGCCCCTGCAGCGCCGCCCG < 41bp 0.535471307394383 0.761527513891487 0.19715524 0.32485142 prediction 0.452112412994208 Functional Gain - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55592648 chr19:55592649 nonsynonymous SNV 0.979 0 22 hm5C_associated_SNPs_116931 0 0 0 0 1 EPS8L1 chr19:55592599 3'AG 55592599 Downstream 51bp
chr11 69924755 69924755 1 + C T GBM 69924754 + 69924734 69924774 41 TCGACGCTCCCGGCCGAGGACCGCAGCGTCCACATCATCAA TCGACGCTCCCGGCCGAGGACTGCAGCGTCCACATCATCAA < 41bp 0.560932502114155 0.786983501866935 0.053019613 0.07959953 prediction 0.45210199950556 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:69924754 chr11:69924755 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_116932 0 0 0 0 1 ANO1 chr11:69924820 5'GT 69924820 Upstream 66bp
chr12 56417501 56417501 1 + A G STAD 56417498 + 56417478 56417518 41 GTGTGTTCCGGATTTCTTGCCTCAGGCCCAAGACTCCAACC GTGTGTTCCGGATTTCTTGCCTCGGGCCCAAGACTCCAACC < 41bp 0.483652378932684 0.726050618411392 0.080562234 0.1032134 prediction 0.452101236822785 Functional Gain - IKZF4 ENSG00000123411 CDS Human protein_coding chr12:56417498 chr12:56417501 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_116933 0 0 0 0 2 IKZF4 chr12:56417455 3'AG 56417455 Downstream 47bp
chr12 56417501 56417501 1 + A G STAD 56417498 + 56417478 56417518 41 GTGTGTTCCGGATTTCTTGCCTCAGGCCCAAGACTCCAACC GTGTGTTCCGGATTTCTTGCCTCGGGCCCAAGACTCCAACC < 41bp 0.483652378932684 0.726050618411392 0.080562234 0.1032134 prediction 0.452101236822785 Functional Gain - IKZF4 ENSG00000123411 CDS Human protein_coding chr12:56417498 chr12:56417501 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_116933 0 0 0 0 2 IKZF4 chr12:56417548 5'GT 56417548 Upstream 48bp
chr12 4716513 4716513 1 + C A rs2255588 4716509 + 4716489 4716529 41 TAAGGTGCTGGGTCTGCCGCCAGCCGGCTTCATTCAGACAG TAAGGTGCTGGGTCTGCCGCCAGCAGGCTTCATTCAGACAG < 41bp 0.309272196644119 0.726050134650603 0.1913606 0.34905463 prediction 0.452100269301207 Functional Gain - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4716509 chr12:4716513 synonymous SNV . 0 25 hm5C_associated_SNPs_116934 0 0 0 0 2 DYRK4 chr12:4716493 3'AG 4716493 Downstream 21bp
chr12 4716513 4716513 1 + C A rs2255588 4716509 + 4716489 4716529 41 TAAGGTGCTGGGTCTGCCGCCAGCCGGCTTCATTCAGACAG TAAGGTGCTGGGTCTGCCGCCAGCAGGCTTCATTCAGACAG < 41bp 0.309272196644119 0.726050134650603 0.1913606 0.34905463 prediction 0.452100269301207 Functional Gain - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4716509 chr12:4716513 synonymous SNV . 0 25 hm5C_associated_SNPs_116934 0 0 0 0 2 DYRK4 chr12:4716553 5'GT 4716553 Upstream 41bp
chr12 122674852 122674852 1 + C A OV 122674848 + 122674828 122674868 41 GACAGCCTGGCCCAGCTCTGCGTGCTGGACGACATCACCGT GACAGCCTGGCCCAGCTCTGCGTGATGGACGACATCACCGT < 41bp 0.306858238696003 0.726047737441255 0.18875825 0.24711728 prediction 0.452095474882509 Functional Gain - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122674848 chr12:122674852 nonsynonymous SNV 0.915 4 25 hm5C_associated_SNPs_116935 0 0 0 0 1 LRRC43 chr12:122674915 5'GT 122674915 Upstream 64bp
chr12 56733728 56733728 1 + C T SKCM 56733727 + 56733707 56733747 41 TGTGTCCTATGTCCTTTCAGCCTGAGGGTCACCACTGGGAG TGTGTCCTATGTCCTTTCAGCTTGAGGGTCACCACTGGGAG < 41bp 0.551084572795563 0.777127377883835 0.04346916 0.08069375 prediction 0.452085610176544 Functional Gain - IL23A ENSG00000110944 CDS Human protein_coding chr12:56733727 chr12:56733728 nonsynonymous SNV 0.970 1 22 hm5C_associated_SNPs_116937 0 0 1 0 1 IL23A chr12:56733727 3'AG 56733727 Downstream 2bp
chr19 33865476 33865476 1 + A G rs115719755 33865473 + 33865453 33865493 41 AGAGAAGAAATGAAGCACTTCGCAGGCATAGTTGGAGGGAG AGAGAAGAAATGAAGCACTTCGCGGGCATAGTTGGAGGGAG < 41bp 0.53329614767908 0.75933695745251 0.5440255 0.8464978 prediction 0.452081619546861 Functional Gain - CEBPG ENSG00000153879 UTR5 Human protein_coding chr19:33865473 chr19:33865476 . . 0 24 hm5C_associated_SNPs_116938 0 0 1 0 1 CEBPG chr19:33865519 5'GT 33865519 Upstream 44bp
chr12 50232422 50232422 1 + C T UCEC 50232421 + 50232401 50232441 41 CGGAGACGCCTTGCAGCTGCCCGGTAACACTTCCAGGGTTG CGGAGACGCCTTGCAGCTGCCTGGTAACACTTCCAGGGTTG < 41bp 0.496644142149289 0.72601347654199 0.2807147 0.24165156 prediction 0.45202695308398 Functional Gain - BCDIN3D ENSG00000186666 CDS Human protein_coding chr12:50232421 chr12:50232422 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_116948 0 0 0 0 1 BCDIN3D chr12:50232423 5'GT 50232423 Upstream 2bp
chr19 41265485 41265485 1 + C G rs77290177 41265481 + 41265461 41265501 41 TGTGCAAGGCGGGGGAGCCACCCCCGTGGTGGGGGCTGTCC TGTGCAAGGCGGGGGAGCCACCCCGGTGGTGGGGGCTGTCC < 41bp 0.617711998934501 0.843718817790591 0.64315444 0.64429444 prediction 0.452013637712178 Functional Gain - SNRPA ENSG00000077312 CDS Human protein_coding chr19:41265481 chr19:41265485 synonymous SNV . 0 25 hm5C_associated_SNPs_116951 0 0 1 0 1 SNRPA chr19:41265515 5'GT 41265515 Upstream 31bp
chr17 41939193 41939193 1 + C T BRCA 41939192 + 41939172 41939212 41 GAGGAAAAGGAAGCCCCTTCCCAGGCCCCTGAGGGGGACGT GAGGAAAAGGAAGCCCCTTCCTAGGCCCCTGAGGGGGACGT < 41bp 0.502116752565133 0.728119487127911 0.6426288 0.4028669 prediction 0.452005469125556 Functional Gain - CD300LG ENSG00000161649 CDS Human protein_coding chr17:41939192 chr17:41939193 stopgain 0.005 0 22 hm5C_associated_SNPs_116952 0 0 0 0 1 CD300LG chr17:41939166 3'AG 41939166 Downstream 28bp
chr2 231865090 231865090 1 + T A rs2271376 231865086 + 231865066 231865106 41 CTTCTGTCCCCACAGGGCCTCTGATTCGCGCCGGCCCGCAT CTTCTGTCCCCACAGGGCCTCTGAATCGCGCCGGCCCGCAT < 41bp 0.655862696552413 0.881854968470466 0.18513724 0.37597573 prediction 0.451984543836106 Functional Gain - SPATA3 ENSG00000173699 CDS Human protein_coding chr2:231865086 chr2:231865090 nonsynonymous SNV 0.013 1 25 hm5C_associated_SNPs_116957 0 0 0 0 1 SPATA3 chr2:231865081 3'AG 231865081 Downstream 10bp
chr11 125221274 125221274 1 + C A SARC 125221270 + 125221250 125221290 41 CAGAATGTCCCGCCCCCACCCTACCAGGACAGCCCACAGGT CAGAATGTCCCGCCCCCACCCTACAAGGACAGCCCACAGGT < 41bp 0.301935912583125 0.725991273994985 0.0572699 0.9195243 prediction 0.45198254798997 Functional Gain - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125221270 chr11:125221274 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_116958 0 0 0 0 2 PKNOX2 chr11:125221180 3'AG 125221180 Downstream 95bp
chr11 125221274 125221274 1 + C A SARC 125221270 + 125221250 125221290 41 CAGAATGTCCCGCCCCCACCCTACCAGGACAGCCCACAGGT CAGAATGTCCCGCCCCCACCCTACAAGGACAGCCCACAGGT < 41bp 0.301935912583125 0.725991273994985 0.0572699 0.9195243 prediction 0.45198254798997 Functional Gain - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125221270 chr11:125221274 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_116958 0 0 0 0 2 PKNOX2 chr11:125221288 5'GT 125221288 Upstream 15bp
chr12 50367324 50367324 1 + C T OV 50367323 + 50367303 50367343 41 CTCTGCTTTATGGGGTCATGCCGGGAGACATCCGAGAGACC CTCTGCTTTATGGGGTCATGCTGGGAGACATCCGAGAGACC < 41bp 0.50149238568308 0.727475052937965 0.9146286 0.84847105 prediction 0.45196533450977 Functional Gain - AQP6 ENSG00000086159 CDS Human protein_coding chr12:50367323 chr12:50367324 nonsynonymous SNV 0.003 5 22 hm5C_associated_SNPs_116959 0 0 0 0 1 AQP6 chr12:50367358 5'GT 50367358 Upstream 35bp
chr5 40681893 40681893 1 + C G BLCA 40681892 + 40681872 40681912 41 CTTCCGCCGCATCGCGGGCGCCGAGATCCAGATGGTCATCT CTTCCGCCGCATCGCGGGCGCGGAGATCCAGATGGTCATCT < 41bp 0.408341388360674 0.725982180188463 0.5225399 0.89775836 prediction 0.451964360376926 Functional Gain - PTGER4 ENSG00000171522 CDS Human protein_coding chr5:40681892 chr5:40681893 synonymous SNV . 0 22 hm5C_associated_SNPs_116960 0 0 0 0 1 PTGER4 chr5:40681962 5'GT 40681962 Upstream 70bp
chr12 52282044 52282044 1 + C A UCEC 52282043 + 52282023 52282063 41 ACCTGGAGGCATTCGGAGACCCAGTGATTGTGCTCCGCGGA ACCTGGAGGCATTCGGAGACCAAGTGATTGTGCTCCGCGGA < 41bp 0.577497508580997 0.803478570963354 0.7799914 0.9032704 prediction 0.451962124764714 Functional Gain - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52282043 chr12:52282044 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_116961 0 0 0 0 1 ANKRD33 chr12:52282115 5'GT 52282115 Upstream 72bp
chr19 45296806 45296806 1 + C T rs3208856 45296805 + 45296785 45296825 41 GCCGTGAGTATCTACCAGTTCCACGGTCAGGCTACTGCTGA GCCGTGAGTATCTACCAGTTCTACGGTCAGGCTACTGCTGA < 41bp 0.476409503899829 0.725975989111866 0.075303465 0.075884074 prediction 0.451951978223732 Functional Gain - CBLC ENSG00000142273 CDS Human protein_coding chr19:45296805 chr19:45296806 nonsynonymous SNV 0.005 1 22 hm5C_associated_SNPs_116962 0 1 0 0 2 CBLC chr19:45296731 3'AG 45296731 Downstream 76bp
chr19 45296806 45296806 1 + C T rs3208856 45296805 + 45296785 45296825 41 GCCGTGAGTATCTACCAGTTCCACGGTCAGGCTACTGCTGA GCCGTGAGTATCTACCAGTTCTACGGTCAGGCTACTGCTGA < 41bp 0.476409503899829 0.725975989111866 0.075303465 0.075884074 prediction 0.451951978223732 Functional Gain - CBLC ENSG00000142273 CDS Human protein_coding chr19:45296805 chr19:45296806 nonsynonymous SNV 0.005 1 22 hm5C_associated_SNPs_116962 0 1 0 0 2 CBLC chr19:45296877 5'GT 45296877 Upstream 72bp
chr6 45399744 45399744 1 + C T UCEC 45399743 + 45399723 45399763 41 AACGATCTGAGATTTGTGGGCCGGAGTGGACGAGGTAGGTC AACGATCTGAGATTTGTGGGCTGGAGTGGACGAGGTAGGTC < 41bp 0.481009006362126 0.725974838446394 0.7664541 0.6672953 prediction 0.451949676892787 Functional Gain - RUNX2 ENSG00000124813 CDS Human protein_coding chr6:45399743 chr6:45399744 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_116963 0 0 0 0 1 RUNX2 chr6:45399756 5'GT 45399756 Upstream 13bp
chr1 150469060 150469060 1 + T C LGG 150469058 + 150469038 150469078 41 ATTGCTGAGGGTCTGGGAAGCATGGAGGGAGGAAGCAGAAT ATTGCTGAGGGTCTGGGAAGCACGGAGGGAGGAAGCAGAAT < 41bp 0.5856032171227 0.811571784482967 0.79054075 0.77497315 prediction 0.451937134720534 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150469058 chr1:150469060 nonsynonymous SNV 0.144 0 23 hm5C_associated_SNPs_116968 0 0 1 0 1 TARS2 chr1:150469104 5'GT 150469104 Upstream 45bp
chr3 19295238 19295238 1 + C T COAD 19295237 + 19295217 19295257 41 TGCGAGCTTGCTGGATTTGCCCGAACTGAAGTCATGCAGAA TGCGAGCTTGCTGGATTTGCCTGAACTGAAGTCATGCAGAA < 41bp 0.504407018927877 0.730368183249299 0.3509605 0.38861978 prediction 0.451922328642843 Functional Gain - KCNH8 ENSG00000183960 CDS Human protein_coding chr3:19295237 chr3:19295238 stopgain 0.997 0 22 hm5C_associated_SNPs_116970 0 0 0 0 1 KCNH8 chr3:19295146 3'AG 19295146 Downstream 93bp
chr8 24242021 24242021 1 + C A LUAD 24242017 + 24241997 24242037 41 CACTGGGGAGACCACAACTTCATGCTGCGTGGGATCTCCCA CACTGGGGAGACCACAACTTCATGATGCGTGGGATCTCCCA < 41bp 0.365205311696843 0.725957566800717 0.1469194 0.13037133 prediction 0.451915133601435 Functional Gain - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24242017 chr8:24242021 nonsynonymous SNV 0.018 1 25 hm5C_associated_SNPs_116972 0 0 0 0 1 ADAMDEC1 chr8:24242105 5'GT 24242105 Upstream 85bp
chr1 180199735 180199735 1 + T G LUSC 180199732 + 180199712 180199752 41 CCCGGAGATGCTAGGTGTGCCGATGCAACGTAAGACACCCC CCCGGAGATGCTAGGTGTGCCGAGGCAACGTAAGACACCCC < 41bp 0.340877647729284 0.725955635591258 0.5844943 0.7834522 prediction 0.451911271182516 Functional Gain - LHX4 ENSG00000121454 CDS Human protein_coding chr1:180199732 chr1:180199735 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_116973 0 0 0 0 1 LHX4 chr1:180199740 5'GT 180199740 Upstream 6bp
chr7 100465777 100465777 1 + C A rs145233601 100465776 + 100465756 100465796 41 TCGCCCTGGAAGCCTGGACGCCGAGATAGACTTGCTGAGCA TCGCCCTGGAAGCCTGGACGCAGAGATAGACTTGCTGAGCA < 41bp 0.587187142608834 0.813139056007306 0.37586504 0.9262505 prediction 0.451903826796945 Functional Gain - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100465776 chr7:100465777 synonymous SNV . 0 22 hm5C_associated_SNPs_116974 0 0 1 0 3 TRIP6 chr7:100465730 3'AG 100465730 Downstream 48bp
chr7 100465777 100465777 1 + C A rs145233601 100465776 + 100465756 100465796 41 TCGCCCTGGAAGCCTGGACGCCGAGATAGACTTGCTGAGCA TCGCCCTGGAAGCCTGGACGCAGAGATAGACTTGCTGAGCA < 41bp 0.587187142608834 0.813139056007306 0.37586504 0.9262505 prediction 0.451903826796945 Functional Gain - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100465776 chr7:100465777 synonymous SNV . 0 22 hm5C_associated_SNPs_116974 0 0 1 0 3 TRIP6 chr7:100465743 3'AG 100465743 Downstream 35bp
chr7 100465777 100465777 1 + C A rs145233601 100465776 + 100465756 100465796 41 TCGCCCTGGAAGCCTGGACGCCGAGATAGACTTGCTGAGCA TCGCCCTGGAAGCCTGGACGCAGAGATAGACTTGCTGAGCA < 41bp 0.587187142608834 0.813139056007306 0.37586504 0.9262505 prediction 0.451903826796945 Functional Gain - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100465776 chr7:100465777 synonymous SNV . 0 22 hm5C_associated_SNPs_116974 0 0 1 0 3 TRIP6 chr7:100465855 5'GT 100465855 Upstream 79bp
chr17 41571142 41571142 1 + C T SKCM 41571141 + 41571121 41571161 41 AGGAGACCTCAATGCGGAATCCTGATAGACCCACTCACTTG AGGAGACCTCAATGCGGAATCTTGATAGACCCACTCACTTG < 41bp 0.591490179966081 0.81743751186361 0.30012822 0.33749127 prediction 0.451894663795057 Functional Gain - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41571141 chr17:41571142 nonsynonymous SNV 0.883 1 22 hm5C_associated_SNPs_116975 0 0 1 0 1 DHX8 chr17:41571051 3'AG 41571051 Downstream 92bp
chr15 81436036 81436036 1 + A G READ 81436033 + 81436013 81436053 41 CAAGTGACCACAGGACCCTCCTGAAATCGTCTAAGAGGTCT CAAGTGACCACAGGACCCTCCTGGAATCGTCTAAGAGGTCT < 41bp 0.504796439718352 0.73074348588206 0.16603887 0.2869833 prediction 0.451894092327415 Functional Gain - CFAP161 ENSG00000156206 CDS Human protein_coding chr15:81436033 chr15:81436036 nonsynonymous SNV 0.579 2 24 hm5C_associated_SNPs_116976 0 0 0 0 1 CFAP161 chr15:81436003 3'AG 81436003 Downstream 34bp
chr11 60565921 60565921 1 + C T rs12419635 60565920 + 60565900 60565940 41 CATTGCATCTCAAAGGCCTGCCGGTGGAGCCCCCGCCATCC CATTGCATCTCAAAGGCCTGCTGGTGGAGCCCCCGCCATCC < 41bp 0.51719990657012 0.743139526000493 0.8759011 0.65953916 prediction 0.451879238860746 Functional Gain - MS4A10 ENSG00000172689 CDS Human protein_coding chr11:60565920 chr11:60565921 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_116979 0 0 0 0 2 MS4A10 chr11:60565869 3'AG 60565869 Downstream 53bp
chr11 60565921 60565921 1 + C T rs12419635 60565920 + 60565900 60565940 41 CATTGCATCTCAAAGGCCTGCCGGTGGAGCCCCCGCCATCC CATTGCATCTCAAAGGCCTGCTGGTGGAGCCCCCGCCATCC < 41bp 0.51719990657012 0.743139526000493 0.8759011 0.65953916 prediction 0.451879238860746 Functional Gain - MS4A10 ENSG00000172689 CDS Human protein_coding chr11:60565920 chr11:60565921 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_116979 0 0 0 0 2 MS4A10 chr11:60565987 5'GT 60565987 Upstream 67bp
chr15 22929856 22929856 1 + T C PRAD 22929854 + 22929834 22929874 41 GTGCTGGACGAGCTGAAGAACATGAAGTGCAGTGTGAAGAA GTGCTGGACGAGCTGAAGAACACGAAGTGCAGTGTGAAGAA < 41bp 0.62224706511175 0.848186299261655 0.10847807 0.06556776 prediction 0.451878468299811 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:22929854 chr15:22929856 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_116980 0 0 1 0 1 CYFIP1 chr15:22929895 5'GT 22929895 Upstream 40bp
chr14 77294698 77294698 1 + C T BLCA 77294697 + 77294677 77294717 41 GCTCTACTGTGAGGCCGAATCCCCGCCGACTGTTGAAAAAG GCTCTACTGTGAGGCCGAATCTCCGCCGACTGTTGAAAAAG < 41bp 0.466837119238631 0.725930277541876 0.20891002 0.4140441 prediction 0.451860555083751 Functional Gain - LRRC74A ENSG00000100565 CDS Human protein_coding chr14:77294697 chr14:77294698 synonymous SNV . 0 22 hm5C_associated_SNPs_116986 0 0 0 3 1 LRRC74A chr14:77294634 3'AG 77294634 Downstream 65bp
chr5 148746993 148746993 1 + C T UCEC 148746992 + 148746972 148747012 41 AGGCAATAAGCTGGTTTGTTCCGGTTTGCTGAAGCTCACCA AGGCAATAAGCTGGTTTGTTCTGGTTTGCTGAAGCTCACCA < 41bp 0.567348853619086 0.793266870245747 0.37495387 0.30207178 prediction 0.451836033253322 Functional Gain - PCYOX1L ENSG00000145882 CDS Human protein_coding chr5:148746992 chr5:148746993 synonymous SNV . 0 22 hm5C_associated_SNPs_116988 0 0 0 0 2 PCYOX1L chr5:148746923 3'AG 148746923 Downstream 71bp
chr5 148746993 148746993 1 + C T UCEC 148746992 + 148746972 148747012 41 AGGCAATAAGCTGGTTTGTTCCGGTTTGCTGAAGCTCACCA AGGCAATAAGCTGGTTTGTTCTGGTTTGCTGAAGCTCACCA < 41bp 0.567348853619086 0.793266870245747 0.37495387 0.30207178 prediction 0.451836033253322 Functional Gain - PCYOX1L ENSG00000145882 CDS Human protein_coding chr5:148746992 chr5:148746993 synonymous SNV . 0 22 hm5C_associated_SNPs_116988 0 0 0 0 2 PCYOX1L chr5:148747063 5'GT 148747063 Upstream 71bp
chr8 79627512 79627512 1 + C T PAAD 79627511 + 79627491 79627531 41 GTTTGGCAAGAAATCCTGCCCCAGGTGTGCTTACAAACAAA GTTTGGCAAGAAATCCTGCCCTAGGTGTGCTTACAAACAAA < 41bp 0.481457207410506 0.725906082684195 0.48639375 0.16352227 prediction 0.451812165368391 Functional Gain - ZC2HC1A ENSG00000104427 CDS Human protein_coding chr8:79627511 chr8:79627512 nonsynonymous SNV 0.417 1 22 hm5C_associated_SNPs_116993 0 0 1 0 2 ZC2HC1A chr8:79627456 3'AG 79627456 Downstream 57bp
chr8 79627512 79627512 1 + C T PAAD 79627511 + 79627491 79627531 41 GTTTGGCAAGAAATCCTGCCCCAGGTGTGCTTACAAACAAA GTTTGGCAAGAAATCCTGCCCTAGGTGTGCTTACAAACAAA < 41bp 0.481457207410506 0.725906082684195 0.48639375 0.16352227 prediction 0.451812165368391 Functional Gain - ZC2HC1A ENSG00000104427 CDS Human protein_coding chr8:79627511 chr8:79627512 nonsynonymous SNV 0.417 1 22 hm5C_associated_SNPs_116993 0 0 1 0 2 ZC2HC1A chr8:79627563 5'GT 79627563 Upstream 52bp
chr1 150316934 150316934 1 + C T SKCM 150316933 + 150316913 150316953 41 GCATGAAGAGGCCAACGCTGCCCGAAAACTCACAGCAGAAC GCATGAAGAGGCCAACGCTGCTCGAAAACTCACAGCAGAAC < 41bp 0.606994209840484 0.832898201569144 0.114705145 0.30105853 prediction 0.451807983457321 Functional Gain - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150316933 chr1:150316934 synonymous SNV . 0 22 hm5C_associated_SNPs_116995 0 0 1 0 3 PRPF3 chr1:150316852 3'AG 150316852 Downstream 83bp
chr1 150316934 150316934 1 + C T SKCM 150316933 + 150316913 150316953 41 GCATGAAGAGGCCAACGCTGCCCGAAAACTCACAGCAGAAC GCATGAAGAGGCCAACGCTGCTCGAAAACTCACAGCAGAAC < 41bp 0.606994209840484 0.832898201569144 0.114705145 0.30105853 prediction 0.451807983457321 Functional Gain - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150316933 chr1:150316934 synonymous SNV . 0 22 hm5C_associated_SNPs_116995 0 0 1 0 3 PRPF3 chr1:150316910 3'AG 150316910 Downstream 25bp
chr1 150316934 150316934 1 + C T SKCM 150316933 + 150316913 150316953 41 GCATGAAGAGGCCAACGCTGCCCGAAAACTCACAGCAGAAC GCATGAAGAGGCCAACGCTGCTCGAAAACTCACAGCAGAAC < 41bp 0.606994209840484 0.832898201569144 0.114705145 0.30105853 prediction 0.451807983457321 Functional Gain - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150316933 chr1:150316934 synonymous SNV . 0 22 hm5C_associated_SNPs_116995 0 0 1 0 3 PRPF3 chr1:150317023 5'GT 150317023 Upstream 90bp
chr6 108798097 108798097 1 + T C rs139391153 108798095 + 108798075 108798115 41 GAAGCTGATGTGGAGGCTGTCATGGATAAGTTGTTTGATGA GAAGCTGATGTGGAGGCTGTCACGGATAAGTTGTTTGATGA < 41bp 0.446935267807638 0.725903806299123 0.8489065 0.81114256 prediction 0.451807612598246 Functional Gain - AFG1L ENSG00000135537 CDS Human protein_coding chr6:108798095 chr6:108798097 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_116996 0 0 0 0 2 AFG1L chr6:108798068 3'AG 108798068 Downstream 30bp
chr6 108798097 108798097 1 + T C rs139391153 108798095 + 108798075 108798115 41 GAAGCTGATGTGGAGGCTGTCATGGATAAGTTGTTTGATGA GAAGCTGATGTGGAGGCTGTCACGGATAAGTTGTTTGATGA < 41bp 0.446935267807638 0.725903806299123 0.8489065 0.81114256 prediction 0.451807612598246 Functional Gain - AFG1L ENSG00000135537 CDS Human protein_coding chr6:108798095 chr6:108798097 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_116996 0 0 0 0 2 AFG1L chr6:108798138 5'GT 108798138 Upstream 42bp
chr6 7845477 7845477 1 + C T UCEC 7845476 + 7845456 7845496 41 GTGGTGACGGCTGCAGAATTCCGCATCTACAAGGACTGTGT GTGGTGACGGCTGCAGAATTCTGCATCTACAAGGACTGTGT < 41bp 0.593258698494408 0.819160315239173 0.41661346 0.44170272 prediction 0.451803233489529 Functional Gain - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7845476 chr6:7845477 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_116997 0 0 1 0 1 BMP6 chr6:7845565 5'GT 7845565 Upstream 89bp
chr17 1638901 1638901 1 + C T COAD 1638900 + 1638880 1638920 41 ACAGTGGAGCCGCTGGACAGCCGGGTGCCCCTGACTGCGGT ACAGTGGAGCCGCTGGACAGCTGGGTGCCCCTGACTGCGGT < 41bp 0.542410327739515 0.768306535603018 0.5353192 0.17519096 prediction 0.451792415727005 Functional Gain - WDR81 ENSG00000167716 CDS Human protein_coding chr17:1638900 chr17:1638901 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_117002 0 0 0 0 1 WDR81 chr17:1638866 3'AG 1638866 Downstream 36bp
chr1 205033536 205033536 1 + C T COAD 205033535 + 205033515 205033555 41 ATCCTTATCCCCTGCCAGCCCCGGGCAGCTCCAAAGGCCGT ATCCTTATCCCCTGCCAGCCCTGGGCAGCTCCAAAGGCCGT < 41bp 0.481508077264147 0.725894012601075 0.87640166 0.3654337 prediction 0.45178802520215 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205033535 chr1:205033536 nonsynonymous SNV 0.642 4 22 hm5C_associated_SNPs_117003 0 0 0 0 2 CNTN2 chr1:205033450 3'AG 205033450 Downstream 87bp
chr1 205033536 205033536 1 + C T COAD 205033535 + 205033515 205033555 41 ATCCTTATCCCCTGCCAGCCCCGGGCAGCTCCAAAGGCCGT ATCCTTATCCCCTGCCAGCCCTGGGCAGCTCCAAAGGCCGT < 41bp 0.481508077264147 0.725894012601075 0.87640166 0.3654337 prediction 0.45178802520215 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205033535 chr1:205033536 nonsynonymous SNV 0.642 4 22 hm5C_associated_SNPs_117003 0 0 0 0 2 CNTN2 chr1:205033600 5'GT 205033600 Upstream 65bp
chr19 49686045 49686045 1 + A G OV 49686042 + 49686022 49686062 41 CAGGCACCAAAGCCCCAGCCCTAAAAGGGGGAGCTGCGGAG CAGGCACCAAAGCCCCAGCCCTAGAAGGGGGAGCTGCGGAG < 41bp 0.573326470249219 0.79921990649106 0.35821903 0.4282293 prediction 0.451786872483683 Functional Gain - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49686042 chr19:49686045 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_117004 0 0 0 0 1 TRPM4 chr19:49686124 5'GT 49686124 Upstream 80bp
chr9 120474721 120474721 1 + T C rs5030710 120474718 + 120474698 120474738 41 TATCAGAGCCTAAGCCACCTCTCTACCTTAATATTGACAGG TATCAGAGCCTAAGCCACCTCTCCACCTTAATATTGACAGG < 41bp 0.521514827883451 0.747407469247312 0.66618603 0.913446 prediction 0.451785282727722 Functional Gain - TLR4 ENSG00000136869 CDS Human protein_coding chr9:120474718 chr9:120474721 synonymous SNV . 0 24 hm5C_associated_SNPs_117006 0 0 0 0 1 TLR4 chr9:120474667 3'AG 120474667 Downstream 55bp
chr19 19309965 19309965 1 + C T UCEC 19309964 + 19309944 19309984 41 CCTCCCCTCTCCTTTGCAGCCCGAGGCGCTGACCTCACCAC CCTCCCCTCTCCTTTGCAGCCTGAGGCGCTGACCTCACCAC < 41bp 0.555221603245192 0.781112286209261 0.5455327 0.41594112 prediction 0.451781365928137 Functional Gain - RFXANK ENSG00000064490 CDS Human protein_coding chr19:19309964 chr19:19309965 stopgain 0.791 0 22 hm5C_associated_SNPs_117009 0 0 1 0 2 RFXANK chr19:19309963 3'AG 19309963 Downstream 3bp
chr19 19309965 19309965 1 + C T UCEC 19309964 + 19309944 19309984 41 CCTCCCCTCTCCTTTGCAGCCCGAGGCGCTGACCTCACCAC CCTCCCCTCTCCTTTGCAGCCTGAGGCGCTGACCTCACCAC < 41bp 0.555221603245192 0.781112286209261 0.5455327 0.41594112 prediction 0.451781365928137 Functional Gain - RFXANK ENSG00000064490 CDS Human protein_coding chr19:19309964 chr19:19309965 stopgain 0.791 0 22 hm5C_associated_SNPs_117009 0 0 1 0 2 RFXANK chr19:19310043 5'GT 19310043 Upstream 79bp
chr15 42107464 42107464 1 + C T LUSC 42107463 + 42107443 42107483 41 CTCGGCCTCTTCAGGTCTACCCCGAGGTGAAGGATAGTAAC CTCGGCCTCTTCAGGTCTACCTCGAGGTGAAGGATAGTAAC < 41bp 0.498578075905301 0.725884625548389 0.22464734 0.67861867 prediction 0.451769251096777 Functional Gain - MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42107463 chr15:42107464 nonsynonymous SNV 0.950 4 22 hm5C_associated_SNPs_117012 0 0 0 0 1 MAPKBP1 chr15:42107457 3'AG 42107457 Downstream 8bp
chr8 38250102 38250102 1 + C T SKCM 38250101 + 38250081 38250121 41 TCCTACCTGCTCTTCTTATTCCCCATCATGTGCATTTCTTC TCCTACCTGCTCTTCTTATTCTCCATCATGTGCATTTCTTC < 41bp 0.466873425515311 0.72587266159037 0.077049226 0.9427228 prediction 0.451745323180739 Functional Gain - LETM2 ENSG00000165046 CDS Human protein_coding chr8:38250101 chr8:38250102 synonymous SNV . 0 22 hm5C_associated_SNPs_117016 0 0 0 0 1 LETM2 chr8:38250060 3'AG 38250060 Downstream 43bp
chrX 130222677 130222677 1 + C T SKCM 130222676 + 130222656 130222696 41 AGGAAGGAGCGGGTAACCCTCCCATTCCGGAGCAAGACCGC AGGAAGGAGCGGGTAACCCTCTCATTCCGGAGCAAGACCGC < 41bp 0.471746065652065 0.725870177544046 0.13564473 0.16496214 prediction 0.451740355088093 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130222676 chrX:130222677 nonsynonymous SNV 0.013 0 22 hm5C_associated_SNPs_117017 0 0 0 0 1 ARHGAP36 chrX:130222602 3'AG 130222602 Downstream 76bp
chr16 81946260 81946260 1 + C A UCEC 81946259 + 81946239 81946279 41 GACATGCTGATGAGGATTCCCCGGGACGGGGCCTTCCTGAT GACATGCTGATGAGGATTCCCAGGGACGGGGCCTTCCTGAT < 41bp 0.596275236247462 0.822144361002913 0.76406884 0.9122726 prediction 0.451738249510901 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81946259 chr16:81946260 synonymous SNV . 0 22 hm5C_associated_SNPs_117018 0 0 0 0 2 PLCG2 chr16:81946202 3'AG 81946202 Downstream 59bp
chr16 81946260 81946260 1 + C A UCEC 81946259 + 81946239 81946279 41 GACATGCTGATGAGGATTCCCCGGGACGGGGCCTTCCTGAT GACATGCTGATGAGGATTCCCAGGGACGGGGCCTTCCTGAT < 41bp 0.596275236247462 0.822144361002913 0.76406884 0.9122726 prediction 0.451738249510901 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81946259 chr16:81946260 synonymous SNV . 0 22 hm5C_associated_SNPs_117018 0 0 0 0 2 PLCG2 chr16:81946321 5'GT 81946321 Upstream 62bp
chr11 118506209 118506209 1 + C T rs140448240 118506208 + 118506188 118506228 41 GGAGGAGGAGCGCGAGCTGGCCGGCCAGGGGCTGCTCCGGA GGAGGAGGAGCGCGAGCTGGCTGGCCAGGGGCTGCTCCGGA < 41bp 0.511760957669565 0.737627816013719 0.4444147 0.29701215 prediction 0.451733716688308 Functional Gain - PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118506208 chr11:118506209 synonymous SNV . 0 22 hm5C_associated_SNPs_117019 0 0 1 0 2 PHLDB1 chr11:118506111 3'AG 118506111 Downstream 99bp
chr11 118506209 118506209 1 + C T rs140448240 118506208 + 118506188 118506228 41 GGAGGAGGAGCGCGAGCTGGCCGGCCAGGGGCTGCTCCGGA GGAGGAGGAGCGCGAGCTGGCTGGCCAGGGGCTGCTCCGGA < 41bp 0.511760957669565 0.737627816013719 0.4444147 0.29701215 prediction 0.451733716688308 Functional Gain - PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118506208 chr11:118506209 synonymous SNV . 0 22 hm5C_associated_SNPs_117019 0 0 1 0 2 PHLDB1 chr11:118506266 5'GT 118506266 Upstream 58bp
chr21 43136639 43136639 1 + C A rs4919933 43136635 + 43136615 43136655 41 GCAGATGTGATTCGAGTCTTCCAGCAACACCACCTCACTCT GCAGATGTGATTCGAGTCTTCCAGAAACACCACCTCACTCT < 41bp 0.367825299947023 0.725866144017153 0.18814254 0.56538963 prediction 0.451732288034306 Functional Gain - LINC00112 ENSG00000232401 ncRNA_exonic Human antisense chr21:43136635 chr21:43136639 . . 0 25 hm5C_associated_SNPs_117020 0 0 0 1 1 LINC00112 chr21:43136704 5'GT 43136704 Upstream 66bp
chr12 20766609 20766609 1 + A G UCEC 20766606 + 20766586 20766626 41 TTCTGACTCTGAAGAGAGCTCTGAAAAAGACAAGCTTGCTA TTCTGACTCTGAAGAGAGCTCTGGAAAAGACAAGCTTGCTA < 41bp 0.519020470375804 0.74488508848924 0.16582963 0.3107217 prediction 0.451729236226873 Functional Gain - PDE3A ENSG00000172572 CDS Human protein_coding chr12:20766606 chr12:20766609 nonsynonymous SNV 0.991 1 24 hm5C_associated_SNPs_117021 0 0 0 0 1 PDE3A chr12:20766634 5'GT 20766634 Upstream 26bp
chr17 4058094 4058094 1 + C T rs144989131 4058093 + 4058073 4058113 41 TGCAAGAGAAGCAGACATTCCCGCCGTGCAACGCGGAGTGG TGCAAGAGAAGCAGACATTCCTGCCGTGCAACGCGGAGTGG < 41bp 0.470490806125484 0.725858981014909 0.39608282 0.42584604 prediction 0.451717962029819 Functional Gain - CYB5D2 ENSG00000167740 CDS Human protein_coding chr17:4058093 chr17:4058094 nonsynonymous SNV 0.487 5 22 hm5C_associated_SNPs_117023 0 0 1 0 1 CYB5D2 chr17:4058154 5'GT 4058154 Upstream 61bp
chr9 101802807 101802807 1 + C T UCEC 101802806 + 101802786 101802826 41 TCTTTGGTGTGTCACAGGGGCCGGACGGGTTGCCTGGGCTG TCTTTGGTGTGTCACAGGGGCTGGACGGGTTGCCTGGGCTG < 41bp 0.497114200275668 0.725854465735327 0.78830093 0.73640895 prediction 0.451708931470654 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101802806 chr9:101802807 nonsynonymous SNV 0.436 3 22 hm5C_associated_SNPs_117024 0 0 0 0 2 COL15A1 chr9:101802803 3'AG 101802803 Downstream 5bp
chr9 101802807 101802807 1 + C T UCEC 101802806 + 101802786 101802826 41 TCTTTGGTGTGTCACAGGGGCCGGACGGGTTGCCTGGGCTG TCTTTGGTGTGTCACAGGGGCTGGACGGGTTGCCTGGGCTG < 41bp 0.497114200275668 0.725854465735327 0.78830093 0.73640895 prediction 0.451708931470654 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101802806 chr9:101802807 nonsynonymous SNV 0.436 3 22 hm5C_associated_SNPs_117024 0 0 0 0 2 COL15A1 chr9:101802838 5'GT 101802838 Upstream 32bp
chr16 29816292 29816292 1 + C T STAD 29816291 + 29816271 29816311 41 GCAGTCTTCAGCGCATTGGCCCGAAGAAGGCCCAGCTAATC GCAGTCTTCAGCGCATTGGCCTGAAGAAGGCCCAGCTAATC < 41bp 0.57780918076356 0.80365948836794 0.30484638 0.2543096 prediction 0.451700615208759 Functional Gain - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29816291 chr16:29816292 nonsynonymous SNV 0.960 1 22 hm5C_associated_SNPs_117025 0 0 1 0 1 KIF22 chr16:29816347 5'GT 29816347 Upstream 56bp
chr4 41362914 41362914 1 + C A COAD 41362910 + 41362890 41362930 41 TCAGCCCCTGCAGCCCGAGCCGCCCCCCGAGCCCGCCTTCT TCAGCCCCTGCAGCCCGAGCCGCCACCCGAGCCCGCCTTCT < 41bp 0.39301725551991 0.725843591015297 0.23936501 0.88424194 prediction 0.451687182030594 Functional Gain - LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41362910 chr4:41362914 synonymous SNV . 0 25 hm5C_associated_SNPs_117027 0 0 0 0 1 LIMCH1 chr4:41362953 5'GT 41362953 Upstream 40bp
chr11 129980502 129980502 1 + C T STAD 129980501 + 129980481 129980521 41 GTTAGTATTGACAACTGGTGCCGGAGGGACAAAAAGCAATG GTTAGTATTGACAACTGGTGCTGGAGGGACAAAAAGCAATG < 41bp 0.477582696003337 0.725841567865477 0.7928664 0.46779937 prediction 0.451683135730955 Functional Gain - APLP2 ENSG00000084234 CDS Human protein_coding chr11:129980501 chr11:129980502 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_117029 0 0 1 0 2 APLP2 chr11:129980433 3'AG 129980433 Downstream 70bp
chr11 129980502 129980502 1 + C T STAD 129980501 + 129980481 129980521 41 GTTAGTATTGACAACTGGTGCCGGAGGGACAAAAAGCAATG GTTAGTATTGACAACTGGTGCTGGAGGGACAAAAAGCAATG < 41bp 0.477582696003337 0.725841567865477 0.7928664 0.46779937 prediction 0.451683135730955 Functional Gain - APLP2 ENSG00000084234 CDS Human protein_coding chr11:129980501 chr11:129980502 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_117029 0 0 1 0 2 APLP2 chr11:129980556 5'GT 129980556 Upstream 55bp
chr3 185332506 185332506 1 + A G UCEC 185332503 + 185332483 185332523 41 CAAAGAGAGGGACAGAAGAACGGACGATCTCCTTGAACTTA CAAAGAGAGGGACAGAAGAACGGGCGATCTCCTTGAACTTA < 41bp 0.487308991250924 0.725838864251943 0.29291958 0.84857696 prediction 0.451677728503887 Functional Gain - SENP2 ENSG00000163904 CDS Human protein_coding chr3:185332503 chr3:185332506 nonsynonymous SNV 0.928 2 24 hm5C_associated_SNPs_117030 0 0 1 0 1 SENP2 chr3:185332528 5'GT 185332528 Upstream 23bp
chr16 67578667 67578667 1 + C T PAAD 67578666 + 67578646 67578686 41 GAGCGGCTGCTGCGGGAAGCCCGAGTACTGGAGGCAGTATG GAGCGGCTGCTGCGGGAAGCCTGAGTACTGGAGGCAGTATG < 41bp 0.534436577650429 0.760272331805346 0.84636605 0.20820224 prediction 0.451671508309834 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578666 chr16:67578667 stopgain 0.480 0 22 hm5C_associated_SNPs_117031 0 0 1 0 2 RIPOR1 chr16:67578598 3'AG 67578598 Downstream 70bp
chr16 67578667 67578667 1 + C T PAAD 67578666 + 67578646 67578686 41 GAGCGGCTGCTGCGGGAAGCCCGAGTACTGGAGGCAGTATG GAGCGGCTGCTGCGGGAAGCCTGAGTACTGGAGGCAGTATG < 41bp 0.534436577650429 0.760272331805346 0.84636605 0.20820224 prediction 0.451671508309834 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578666 chr16:67578667 stopgain 0.480 0 22 hm5C_associated_SNPs_117031 0 0 1 0 2 RIPOR1 chr16:67578733 5'GT 67578733 Upstream 67bp
chrX 2942109 2942109 1 + T A rs5939407 2942105 + 2942085 2942125 41 CAGGAGCGCCTGGCCAACCACACCTTGGTGTACTTCACCTC CAGGAGCGCCTGGCCAACCACACCATGGTGTACTTCACCTC < 41bp 0.680751926393426 0.906586895178711 0.3880213 0.52217525 prediction 0.451669937570571 Functional Gain - ARSH ENSG00000205667 CDS Human protein_coding chrX:2942105 chrX:2942109 nonsynonymous SNV 0.120 4 25 hm5C_associated_SNPs_117032 0 0 0 0 2 ARSH chrX:2942062 3'AG 2942062 Downstream 48bp
chrX 2942109 2942109 1 + T A rs5939407 2942105 + 2942085 2942125 41 CAGGAGCGCCTGGCCAACCACACCTTGGTGTACTTCACCTC CAGGAGCGCCTGGCCAACCACACCATGGTGTACTTCACCTC < 41bp 0.680751926393426 0.906586895178711 0.3880213 0.52217525 prediction 0.451669937570571 Functional Gain - ARSH ENSG00000205667 CDS Human protein_coding chrX:2942105 chrX:2942109 nonsynonymous SNV 0.120 4 25 hm5C_associated_SNPs_117032 0 0 0 0 2 ARSH chrX:2942196 5'GT 2942196 Upstream 88bp
chr20 21329051 21329051 1 + A G READ 21329048 + 21329028 21329068 41 ATTTTCTACCTCCATCATGGCGGAAGCTCATGAGTGATCCT ATTTTCTACCTCCATCATGGCGGGAGCTCATGAGTGATCCT < 41bp 0.539430581372551 0.765258289226604 0.24407789 0.7989943 prediction 0.451655415708106 Functional Gain - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21329048 chr20:21329051 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_117034 0 0 1 0 2 XRN2 chr20:21328979 3'AG 21328979 Downstream 73bp
chr20 21329051 21329051 1 + A G READ 21329048 + 21329028 21329068 41 ATTTTCTACCTCCATCATGGCGGAAGCTCATGAGTGATCCT ATTTTCTACCTCCATCATGGCGGGAGCTCATGAGTGATCCT < 41bp 0.539430581372551 0.765258289226604 0.24407789 0.7989943 prediction 0.451655415708106 Functional Gain - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21329048 chr20:21329051 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_117034 0 0 1 0 2 XRN2 chr20:21329068 5'GT 21329068 Upstream 18bp
chr22 29885659 29885659 1 + C T SKCM 29885658 + 29885638 29885678 41 TGAAGGCAGAAGCAAAGTCCCCTGAGAAGGCCAAGTCCCCA TGAAGGCAGAAGCAAAGTCCCTTGAGAAGGCCAAGTCCCCA < 41bp 0.533871895870184 0.759695621114206 0.08350068 0.086290866 prediction 0.451647450488044 Functional Gain - NEFH ENSG00000100285 CDS Human protein_coding chr22:29885658 chr22:29885659 nonsynonymous SNV 0.003 5 22 hm5C_associated_SNPs_117037 0 0 0 0 1 NEFH chr22:29885571 3'AG 29885571 Downstream 89bp
chr17 16329464 16329464 1 + C T UCEC 16329463 + 16329443 16329483 41 TCAGGACTGAGCCACCTTTCCCGAAAGTTCACCGAGTGGTG TCAGGACTGAGCCACCTTTCCTGAAAGTTCACCGAGTGGTG < 41bp 0.463354227108544 0.725818394089131 0.396764 0.26567945 prediction 0.451636788178261 Functional Gain - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16329463 chr17:16329464 stopgain 0.981 1 22 hm5C_associated_SNPs_117039 0 0 0 0 1 TRPV2 chr17:16329413 3'AG 16329413 Downstream 52bp
chr10 71392586 71392586 1 + C T SKCM 71392585 + 71392565 71392605 41 ATGGTGCTCCCCCAGGGGGTCCTGGCCCCCGCCAGCAGCAG ATGGTGCTCCCCCAGGGGGTCTTGGCCCCCGCCAGCAGCAG < 41bp 0.509711145446093 0.735525747980484 0.4766465 0.46947533 prediction 0.451629205068781 Functional Gain - C10orf35 ENSG00000171224 CDS Human protein_coding chr10:71392585 chr10:71392586 nonsynonymous SNV 0.007 0 22 hm5C_associated_SNPs_117042 0 0 0 0 1 C10orf35 chr10:71392546 3'AG 71392546 Downstream 41bp
chr12 49938091 49938091 1 + A G OV 49938088 + 49938068 49938108 41 GGCCGTGTTCGCCCTGCTCGCGCACTGGGTCGCCTGCGTCT GGCCGTGTTCGCCCTGCTCGCGCGCTGGGTCGCCTGCGTCT < 41bp 0.46296342338625 0.725809357111074 0.17629981 0.41388822 prediction 0.451618714222147 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49938088 chr12:49938091 nonsynonymous SNV 0.994 5 24 hm5C_associated_SNPs_117046 0 0 0 0 1 KCNH3 chr12:49938165 5'GT 49938165 Upstream 75bp
chr2 63826370 63826370 1 + C T UCEC 63826369 + 63826349 63826389 41 TCCAAGTCAGCTCCATCCATCCCCAAGGAGAACTTCAGTTG TCCAAGTCAGCTCCATCCATCTCCAAGGAGAACTTCAGTTG < 41bp 0.626420338382414 0.852228679976625 0.09316471 0.93951166 prediction 0.451616683188422 Functional Gain - MDH1 ENSG00000014641 CDS Human protein_coding chr2:63826369 chr2:63826370 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_117047 0 0 1 0 2 MDH1 chr2:63826304 3'AG 63826304 Downstream 67bp
chr2 63826370 63826370 1 + C T UCEC 63826369 + 63826349 63826389 41 TCCAAGTCAGCTCCATCCATCCCCAAGGAGAACTTCAGTTG TCCAAGTCAGCTCCATCCATCTCCAAGGAGAACTTCAGTTG < 41bp 0.626420338382414 0.852228679976625 0.09316471 0.93951166 prediction 0.451616683188422 Functional Gain - MDH1 ENSG00000014641 CDS Human protein_coding chr2:63826369 chr2:63826370 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_117047 0 0 1 0 2 MDH1 chr2:63826426 5'GT 63826426 Upstream 57bp
chr12 111746135 111746135 1 + C G OV 111746134 + 111746114 111746154 41 TCCAGCACCTGCAGCCTCCCCCAGGTAAGTGTCCCTGCCAC TCCAGCACCTGCAGCCTCCCCGAGGTAAGTGTCCCTGCCAC < 41bp 0.410766707291823 0.725805642607032 0.8942497 0.90080094 prediction 0.451611285214064 Functional Gain - CUX2 ENSG00000111249 CDS Human protein_coding chr12:111746134 chr12:111746135 nonsynonymous SNV 0.954 4 22 hm5C_associated_SNPs_117049 0 0 0 0 2 CUX2 chr12:111746089 3'AG 111746089 Downstream 47bp
chr12 111746135 111746135 1 + C G OV 111746134 + 111746114 111746154 41 TCCAGCACCTGCAGCCTCCCCCAGGTAAGTGTCCCTGCCAC TCCAGCACCTGCAGCCTCCCCGAGGTAAGTGTCCCTGCCAC < 41bp 0.410766707291823 0.725805642607032 0.8942497 0.90080094 prediction 0.451611285214064 Functional Gain - CUX2 ENSG00000111249 CDS Human protein_coding chr12:111746134 chr12:111746135 nonsynonymous SNV 0.954 4 22 hm5C_associated_SNPs_117049 0 0 0 0 2 CUX2 chr12:111746137 5'GT 111746137 Upstream 3bp
chr3 9971731 9971731 1 + A G COAD 9971728 + 9971708 9971748 41 CCAGACTCCCTGGGGCCTCTCAAAGACGATGTGCTACTGTT CCAGACTCCCTGGGGCCTCTCAAGGACGATGTGCTACTGTT < 41bp 0.489934232027248 0.725804754748715 0.839619 0.92651033 prediction 0.45160950949743 Functional Gain - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9971728 chr3:9971731 synonymous SNV . 0 24 hm5C_associated_SNPs_117050 0 0 0 0 1 IL17RC chr3:9971712 3'AG 9971712 Downstream 20bp
chr16 8866684 8866684 1 + C T rs149855547 8866683 + 8866663 8866703 41 GAAAAAGAAGAAGACGGTGGCCGGGATCATCGTGGAGCCCA GAAAAAGAAGAAGACGGTGGCTGGGATCATCGTGGAGCCCA < 41bp 0.553055609605619 0.778855052649274 0.8678793 0.6250292 prediction 0.45159888608731 Functional Gain - ABAT ENSG00000183044 CDS Human protein_coding chr16:8866683 chr16:8866684 synonymous SNV . 0 22 hm5C_associated_SNPs_117051 1 0 1 0 2 ABAT chr16:8866637 3'AG 8866637 Downstream 48bp
chr16 8866684 8866684 1 + C T rs149855547 8866683 + 8866663 8866703 41 GAAAAAGAAGAAGACGGTGGCCGGGATCATCGTGGAGCCCA GAAAAAGAAGAAGACGGTGGCTGGGATCATCGTGGAGCCCA < 41bp 0.553055609605619 0.778855052649274 0.8678793 0.6250292 prediction 0.45159888608731 Functional Gain - ABAT ENSG00000183044 CDS Human protein_coding chr16:8866683 chr16:8866684 synonymous SNV . 0 22 hm5C_associated_SNPs_117051 1 0 1 0 2 ABAT chr16:8866774 5'GT 8866774 Upstream 91bp
chr2 28766087 28766087 1 + C T SKCM 28766086 + 28766066 28766106 41 GGTTCTCTTTTAGGAGGACCCCCGACTCCAGGATTCTACCA GGTTCTCTTTTAGGAGGACCCTCGACTCCAGGATTCTACCA < 41bp 0.487326495298497 0.725783532138746 0.25519007 0.65957594 prediction 0.451567064277493 Functional Gain - PLB1 ENSG00000163803 CDS Human protein_coding chr2:28766086 chr2:28766087 synonymous SNV . 0 22 hm5C_associated_SNPs_117057 0 0 0 0 2 PLB1 chr2:28766079 3'AG 28766079 Downstream 9bp
chr2 28766087 28766087 1 + C T SKCM 28766086 + 28766066 28766106 41 GGTTCTCTTTTAGGAGGACCCCCGACTCCAGGATTCTACCA GGTTCTCTTTTAGGAGGACCCTCGACTCCAGGATTCTACCA < 41bp 0.487326495298497 0.725783532138746 0.25519007 0.65957594 prediction 0.451567064277493 Functional Gain - PLB1 ENSG00000163803 CDS Human protein_coding chr2:28766086 chr2:28766087 synonymous SNV . 0 22 hm5C_associated_SNPs_117057 0 0 0 0 2 PLB1 chr2:28766135 5'GT 28766135 Upstream 49bp
chr4 123302156 123302156 1 + C T SARC 123302155 + 123302135 123302175 41 ATTTGTTTTTAGGTAATTTTCCAGAGCCGTTGCTTTCCAAG ATTTGTTTTTAGGTAATTTTCTAGAGCCGTTGCTTTCCAAG < 41bp 0.518798426626774 0.744580736650534 0.88074243 0.40771246 prediction 0.45156462004752 Functional Gain - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123302155 chr4:123302156 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_117058 0 0 0 0 1 ADAD1 chr4:123302147 3'AG 123302147 Downstream 10bp
chr22 50956587 50956587 1 + C T LUAD 50956586 + 50956566 50956606 41 CAGGGTGAGGTCCTGGCCAGCCGGAAGGATTTCAGGATGAA CAGGGTGAGGTCCTGGCCAGCTGGAAGGATTTCAGGATGAA < 41bp 0.576217978232451 0.801990146638417 0.41000536 0.4122927 prediction 0.451544336811932 Functional Gain - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50956586 chr22:50956587 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_117065 0 0 1 0 1 NCAPH2 chr22:50956562 3'AG 50956562 Downstream 26bp
chr1 27679805 27679805 1 + C A rs200249506 27679801 + 27679781 27679821 41 CTGCCTGATGACAGCCAGGCCAGCCGCCAGCGTACAAGGGT CTGCCTGATGACAGCCAGGCCAGCAGCCAGCGTACAAGGGT < 41bp 0.334203526115304 0.725770162825439 0.25659633 0.29087383 prediction 0.451540325650877 Functional Gain - SYTL1 ENSG00000142765 CDS Human protein_coding chr1:27679801 chr1:27679805 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_117067 0 0 0 0 1 SYTL1 chr1:27679774 3'AG 27679774 Downstream 32bp
chr1 36060042 36060042 1 + C T UCEC 36060041 + 36060021 36060061 41 TGATGGCTCAGGACCGCTCACCGCTGGGCAACAGCCGCCCA TGATGGCTCAGGACCGCTCACTGCTGGGCAACAGCCGCCCA < 41bp 0.541811418052891 0.767575270035356 0.25106686 0.21013859 prediction 0.45152770396493 Functional Gain - TFAP2E ENSG00000116819 CDS Human protein_coding chr1:36060041 chr1:36060042 nonsynonymous SNV 0.598 4 22 hm5C_associated_SNPs_117070 0 0 0 0 1 TFAP2E chr1:36059995 3'AG 36059995 Downstream 48bp
chr11 65721175 65721175 1 + C T LUAD 65721174 + 65721154 65721194 41 CACCCAGAGGGAGCCGGGGCCCTGGGGCGGCCCAGCGCAAG CACCCAGAGGGAGCCGGGGCCTTGGGGCGGCCCAGCGCAAG < 41bp 0.534874797521616 0.760636665391862 0.42039642 0.5629827 prediction 0.451523735740491 Functional Gain - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65721174 chr11:65721175 unknown 0.001 0 22 hm5C_associated_SNPs_117071 0 0 0 0 1 TSGA10IP chr11:65721208 5'GT 65721208 Upstream 34bp
chr11 11971470 11971470 1 + A G BLCA 11971467 + 11971447 11971487 41 TCTGCTAGATGCTGTGTTTGCTAAAGGAATGACTGTACGGC TCTGCTAGATGCTGTGTTTGCTAGAGGAATGACTGTACGGC < 41bp 0.50652147571548 0.73228057567029 0.1626201 0.4371752 prediction 0.451518199909621 Functional Gain - USP47 ENSG00000170242 CDS Human protein_coding chr11:11971467 chr11:11971470 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_117072 0 0 1 0 2 USP47 chr11:11971436 3'AG 11971436 Downstream 35bp
chr11 11971470 11971470 1 + A G BLCA 11971467 + 11971447 11971487 41 TCTGCTAGATGCTGTGTTTGCTAAAGGAATGACTGTACGGC TCTGCTAGATGCTGTGTTTGCTAGAGGAATGACTGTACGGC < 41bp 0.50652147571548 0.73228057567029 0.1626201 0.4371752 prediction 0.451518199909621 Functional Gain - USP47 ENSG00000170242 CDS Human protein_coding chr11:11971467 chr11:11971470 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_117072 0 0 1 0 2 USP47 chr11:11971551 5'GT 11971551 Upstream 82bp
chr1 156626883 156626883 1 + T G LUSC 156626881 + 156626861 156626901 41 ACACCCGAGGAACAGGACTTCATCAACAGTGGGCTGGGAGA ACACCCGAGGAACAGGACTTCAGCAACAGTGGGCTGGGAGA < 41bp 0.376666496358912 0.725754436991208 0.10087162 0.44812882 prediction 0.451508873982417 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156626881 chr1:156626883 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_117074 0 0 0 0 1 BCAN chr1:156626888 5'GT 156626888 Upstream 6bp
chr11 75439891 75439891 1 + C T SKCM 75439890 + 75439870 75439910 41 ATGACCTATTTGACCAGATTCCCAACTCTTCTGGCTCCTGG ATGACCTATTTGACCAGATTCTCAACTCTTCTGGCTCCTGG < 41bp 0.537307308551887 0.763059536075223 0.32954952 0.65908337 prediction 0.451504455046672 Functional Gain - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75439890 chr11:75439891 nonsynonymous SNV 0.626 0 22 hm5C_associated_SNPs_117075 0 0 0 0 1 MOGAT2 chr11:75439835 3'AG 75439835 Downstream 57bp
chr14 24534474 24534474 1 + C A rs112606230 24534473 + 24534453 24534493 41 GGCCGGGGACCTTCCTTCCGCCGGAAGATGGTAAGTGAGGC GGCCGGGGACCTTCCTTCCGCAGGAAGATGGTAAGTGAGGC < 41bp 0.590346225286963 0.816087787557955 0.57783353 0.83994937 prediction 0.451483124541985 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24534473 chr14:24534474 synonymous SNV . 0 22 hm5C_associated_SNPs_117079 0 0 0 0 1 CARMIL3 chr14:24534482 5'GT 24534482 Upstream 9bp
chr1 53927229 53927229 1 + C T SKCM 53927228 + 53927208 53927248 41 ATGCACCCCTACTGCCCGTTCCCGCTGGGCTACCTGGACGC ATGCACCCCTACTGCCCGTTCTCGCTGGGCTACCTGGACGC < 41bp 0.574657456088313 0.800397830824035 0.08476943 0.11667532 prediction 0.451480749471445 Functional Gain - DMRTB1 ENSG00000143006 CDS Human protein_coding chr1:53927228 chr1:53927229 nonsynonymous SNV 0.006 1 22 hm5C_associated_SNPs_117080 0 0 0 0 2 DMRTB1 chr1:53927146 3'AG 53927146 Downstream 84bp
chr1 53927229 53927229 1 + C T SKCM 53927228 + 53927208 53927248 41 ATGCACCCCTACTGCCCGTTCCCGCTGGGCTACCTGGACGC ATGCACCCCTACTGCCCGTTCTCGCTGGGCTACCTGGACGC < 41bp 0.574657456088313 0.800397830824035 0.08476943 0.11667532 prediction 0.451480749471445 Functional Gain - DMRTB1 ENSG00000143006 CDS Human protein_coding chr1:53927228 chr1:53927229 nonsynonymous SNV 0.006 1 22 hm5C_associated_SNPs_117080 0 0 0 0 2 DMRTB1 chr1:53927318 5'GT 53927318 Upstream 90bp
chr17 78075384 78075384 1 + C G rs144639114 78075380 + 78075360 78075400 41 CCTCTGCGCGCCCCCGGGCACGACCCCGGAGTCTCCGCGGG CCTCTGCGCGCCCCCGGGCACGACGCCGGAGTCTCCGCGGG < 41bp 0.614206455852393 0.839942504379386 0.26328 0.37893733 prediction 0.451472097053986 Functional Gain - GAA ENSG00000171298 UTR5 Human protein_coding chr17:78075380 chr17:78075384 . . 0 25 hm5C_associated_SNPs_117083 2 0 1 0 1 GAA chr17:78075424 5'GT 78075424 Upstream 41bp
chr8 37632983 37632983 1 + C A ACC 37632982 + 37632962 37633002 41 GGCATGATCTTAGTCAAGGACCAAATCCAGACTTCCAGGTA GGCATGATCTTAGTCAAGGACAAAATCCAGACTTCCAGGTA < 41bp 0.462280953350412 0.72573557546329 0.2474266 0.2943738 prediction 0.451471150926581 Functional Gain - PLPBP ENSG00000147471 CDS Human protein_coding chr8:37632982 chr8:37632983 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_117084 0 0 1 0 1 PLPBP chr8:37632999 5'GT 37632999 Upstream 17bp
chr3 14526396 14526396 1 + C T SKCM 14526395 + 14526375 14526415 41 AGAGTCAAGTACCTGCTGACCCCAAGGGAACCCAACCGCTG AGAGTCAAGTACCTGCTGACCTCAAGGGAACCCAACCGCTG < 41bp 0.464559818176965 0.725733848113904 0.22498867 0.16565773 prediction 0.451467696227808 Functional Gain - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14526395 chr3:14526396 nonsynonymous SNV 0.921 0 22 hm5C_associated_SNPs_117085 0 0 1 0 1 SLC6A6 chr3:14526375 3'AG 14526375 Downstream 22bp
chr14 100793680 100793680 1 + C G HNSC 100793676 + 100793656 100793696 41 GCCCACCAAGGCCGACATCACGCTCTCGGGATGCGCCTCCG GCCCACCAAGGCCGACATCACGCTGTCGGGATGCGCCTCCG < 41bp 0.543486314680991 0.769219429747636 0.008081257 0.017268121 prediction 0.451466230133291 Functional Gain - SLC25A47 ENSG00000140107 CDS Human protein_coding chr14:100793676 chr14:100793680 synonymous SNV . 0 25 hm5C_associated_SNPs_117086 0 0 0 0 1 SLC25A47 chr14:100793707 5'GT 100793707 Upstream 28bp
chr10 75012793 75012793 1 + T A rs187698326 75012789 + 75012769 75012809 41 AGCGAGCAGAGAAGGCAAACCTAGTGCTTGCTAAGGAAGAC AGCGAGCAGAGAAGGCAAACCTAGAGCTTGCTAAGGAAGAC < 41bp 0.438292652744858 0.725730831358413 0.14092088 0.13451687 prediction 0.451461662716826 Functional Gain - DNAJC9-AS1 ENSG00000227540 ncRNA_exonic Human antisense chr10:75012789 chr10:75012793 . . 0 25 hm5C_associated_SNPs_117087 0 0 0 0 1 DNAJC9-AS1 chr10:75012853 5'GT 75012853 Upstream 61bp
chr14 62551076 62551076 1 + C T SKCM 62551075 + 62551055 62551095 41 ATGATCAAAGGCAGCCATTTCCGAAACCTCGCTGTTAACCG ATGATCAAAGGCAGCCATTTCTGAAACCTCGCTGTTAACCG < 41bp 0.578681036825794 0.804401357318716 0.34761655 0.11893502 prediction 0.451440640985843 Functional Gain - SYT16 ENSG00000139973 CDS Human protein_coding chr14:62551075 chr14:62551076 stopgain 1.000 1 22 hm5C_associated_SNPs_117089 0 0 1 0 1 SYT16 chr14:62551103 5'GT 62551103 Upstream 28bp
chr1 17287618 17287618 1 + C G rs537096044 17287617 + 17287597 17287637 41 TTCCCCTGCCCGGGACGCACCCGCAGAAGGTAAGGGCAGTG TTCCCCTGCCCGGGACGCACCGGCAGAAGGTAAGGGCAGTG < 41bp 0.43490415556619 0.725715413607393 0.12970307 0.37733027 prediction 0.451430827214786 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17287617 chr1:17287618 synonymous SNV . 0 22 hm5C_associated_SNPs_117091 0 0 0 0 1 CROCC chr1:17287625 5'GT 17287625 Upstream 8bp
chr19 30936627 30936627 1 + C A LUAD 30936623 + 30936603 30936643 41 GAGGACAGCCCGCACCCCTCCTCGCCATCCTCCTCAGGTAG GAGGACAGCCCGCACCCCTCCTCGACATCCTCCTCAGGTAG < 41bp 0.307623969087551 0.725710326534076 0.35036156 0.62106293 prediction 0.451420653068152 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30936623 chr19:30936627 nonsynonymous SNV 0.902 4 25 hm5C_associated_SNPs_117092 0 0 1 0 1 ZNF536 chr19:30936639 5'GT 30936639 Upstream 13bp
chr2 74076576 74076576 1 + C T UCEC 74076575 + 74076555 74076595 41 TTAGCCAGTGCCAACACTGCCCGGGGAGTGGAGACATGTGG TTAGCCAGTGCCAACACTGCCTGGGGAGTGGAGACATGTGG < 41bp 0.568644092448264 0.794346194101883 0.6433502 0.34600145 prediction 0.451404203307239 Functional Gain - STAMBP ENSG00000124356 CDS Human protein_coding chr2:74076575 chr2:74076576 nonsynonymous SNV 0.940 4 22 hm5C_associated_SNPs_117096 0 0 1 0 2 STAMBP chr2:74076490 3'AG 74076490 Downstream 87bp
chr2 74076576 74076576 1 + C T UCEC 74076575 + 74076555 74076595 41 TTAGCCAGTGCCAACACTGCCCGGGGAGTGGAGACATGTGG TTAGCCAGTGCCAACACTGCCTGGGGAGTGGAGACATGTGG < 41bp 0.568644092448264 0.794346194101883 0.6433502 0.34600145 prediction 0.451404203307239 Functional Gain - STAMBP ENSG00000124356 CDS Human protein_coding chr2:74076575 chr2:74076576 nonsynonymous SNV 0.940 4 22 hm5C_associated_SNPs_117096 0 0 1 0 2 STAMBP chr2:74076614 5'GT 74076614 Upstream 39bp
chr1 11766675 11766675 1 + C T UCEC 11766674 + 11766654 11766694 41 GGGACTGGCATTGCCCTACCCCGAGAAGGAGAACCGACCTC GGGACTGGCATTGCCCTACCCTGAGAAGGAGAACCGACCTC < 41bp 0.525601862051556 0.751302969609698 0.14067107 0.15114301 prediction 0.451402215116284 Functional Gain - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11766674 chr1:11766675 synonymous SNV . 0 22 hm5C_associated_SNPs_117097 0 0 0 0 1 DRAXIN chr1:11766766 5'GT 11766766 Upstream 92bp
chr11 31805009 31805009 1 + C T LGG 31805008 + 31804988 31805028 41 CAAAATGGATCTGGCAGAATCCGCCAAGCGGCTGGGCCCAG CAAAATGGATCTGGCAGAATCTGCCAAGCGGCTGGGCCCAG < 41bp 0.527960617539731 0.753645910587626 0.27589476 0.046943307 prediction 0.451370586095791 Functional Gain - ELP4 ENSG00000109911 CDS Human protein_coding chr11:31805008 chr11:31805009 nonsynonymous SNV 0.473 1 22 hm5C_associated_SNPs_117103 0 0 0 0 1 ELP4 chr11:31804941 3'AG 31804941 Downstream 69bp
chr3 12447402 12447402 1 + C T SKCM 12447401 + 12447381 12447421 41 CCATCAGGTTTGGGCGGATGCCACAGGCCGAGAAGGAGAAG CCATCAGGTTTGGGCGGATGCTACAGGCCGAGAAGGAGAAG < 41bp 0.579080686550717 0.804762154368213 0.78070056 0.8884701 prediction 0.451362935634991 Functional Gain - PPARG ENSG00000132170 CDS Human protein_coding chr3:12447401 chr3:12447402 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_117105 0 0 1 0 1 PPARG chr3:12447381 3'AG 12447381 Downstream 22bp
chr18 56363619 56363619 1 + C T SKCM 56363618 + 56363598 56363638 41 GAATAAAGATTACTGTAAACCCAGAGTCAAAGGCAGTCTTG GAATAAAGATTACTGTAAACCTAGAGTCAAAGGCAGTCTTG < 41bp 0.546881565966712 0.772562395056626 0.3754837 0.22175312 prediction 0.451361658179828 Functional Gain - MALT1 ENSG00000172175 CDS Human protein_coding chr18:56363618 chr18:56363619 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_117106 0 0 1 0 1 MALT1 chr18:56363598 3'AG 56363598 Downstream 22bp
chr14 105394151 105394151 1 + C T SKCM 105394150 + 105394130 105394170 41 TCCTGGGAGCATGGCTCCAGCCCAGCTTGGGAGCCCCTGGA TCCTGGGAGCATGGCTCCAGCTCAGCTTGGGAGCCCCTGGA < 41bp 0.520278128794755 0.745957741826176 0.3249639 0.32517695 prediction 0.451359226062841 Functional Gain - PLD4 ENSG00000166428 CDS Human protein_coding chr14:105394150 chr14:105394151 nonsynonymous SNV 0.013 0 22 hm5C_associated_SNPs_117107 0 0 0 0 1 PLD4 chr14:105394203 5'GT 105394203 Upstream 53bp
chrX 150832732 150832732 1 + C A rs145659327 150832731 + 150832711 150832751 41 ACCAGCAGGACCCAGAGAACCCAGTTGCCCCGTTGGACCAG ACCAGCAGGACCCAGAGAACCAAGTTGCCCCGTTGGACCAG < 41bp 0.577158119241914 0.80283738639881 0.20396927 0.5488787 prediction 0.451358534313793 Functional Gain - PASD1 ENSG00000166049 CDS Human protein_coding chrX:150832731 chrX:150832732 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_117108 0 0 0 0 1 PASD1 chrX:150832820 5'GT 150832820 Upstream 89bp
chr2 242755766 242755766 1 + C T SKCM 242755765 + 242755745 242755785 41 TACCGCGTGCCCTCGCTGCTCCCCGTGCCCCCCGGGCCCAC TACCGCGTGCCCTCGCTGCTCTCCGTGCCCCCCGGGCCCAC < 41bp 0.57133680784331 0.797010363238495 0.16614038 0.29137582 prediction 0.45134711079037 Functional Gain - NEU4 ENSG00000204099 CDS Human protein_coding chr2:242755765 chr2:242755766 nonsynonymous SNV 0.024 0 22 hm5C_associated_SNPs_117110 0 0 1 0 2 NEU4 chr2:242755676 3'AG 242755676 Downstream 91bp
chr2 242755766 242755766 1 + C T SKCM 242755765 + 242755745 242755785 41 TACCGCGTGCCCTCGCTGCTCCCCGTGCCCCCCGGGCCCAC TACCGCGTGCCCTCGCTGCTCTCCGTGCCCCCCGGGCCCAC < 41bp 0.57133680784331 0.797010363238495 0.16614038 0.29137582 prediction 0.45134711079037 Functional Gain - NEU4 ENSG00000204099 CDS Human protein_coding chr2:242755765 chr2:242755766 nonsynonymous SNV 0.024 0 22 hm5C_associated_SNPs_117110 0 0 1 0 2 NEU4 chr2:242755679 3'AG 242755679 Downstream 88bp
chr21 45712979 45712979 1 + C T rs142366324 45712978 + 45712958 45712998 41 TCTACAAGCACCTGCCGGCTCCGCCTTCTGCAGCCCCGCTG TCTACAAGCACCTGCCGGCTCTGCCTTCTGCAGCCCCGCTG < 41bp 0.519664375017554 0.745334276446344 0.06670457 0.17485192 prediction 0.451339802857578 Functional Gain - AIRE ENSG00000160224 CDS Human protein_coding chr21:45712978 chr21:45712979 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_117112 0 0 0 0 1 AIRE chr21:45713058 5'GT 45713058 Upstream 80bp
chr22 47189485 47189485 1 + C A LIHC 47189481 + 47189461 47189501 41 CCAGGAGTTTGAGAGCAATACCAGCGATGCCTGGGACGCTG CCAGGAGTTTGAGAGCAATACCAGAGATGCCTGGGACGCTG < 41bp 0.337973885311204 0.725669523970694 0.8586961 0.8970148 prediction 0.451339047941387 Functional Gain - TBC1D22A ENSG00000054611 CDS Human protein_coding chr22:47189481 chr22:47189485 nonsynonymous SNV 0.912 4 25 hm5C_associated_SNPs_117113 0 0 1 1 1 TBC1D22A chr22:47189398 3'AG 47189398 Downstream 88bp
chr13 100637338 100637338 1 + C A BLCA 100637334 + 100637314 100637354 41 TGTGCGACAAGTCCTACACGCACCCCAGCTCGCTGCGGAAG TGTGCGACAAGTCCTACACGCACCACAGCTCGCTGCGGAAG < 41bp 0.297507258300484 0.725669016933555 0.041148156 0.041826814 prediction 0.451338033867111 Functional Gain - ZIC2 ENSG00000043355 CDS Human protein_coding chr13:100637334 chr13:100637338 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_117114 0 0 1 0 1 ZIC2 chr13:100637363 5'GT 100637363 Upstream 26bp
chr6 151907108 151907108 1 + A G BRCA 151907105 + 151907085 151907125 41 GGTTTCACCAGAAAGCTCTCCAGAGGGCCCAGAAAGCAGAG GGTTTCACCAGAAAGCTCTCCAGGGGGCCCAGAAAGCAGAG < 41bp 0.540208506992005 0.765875471170036 0.8879355 0.9056357 prediction 0.451333928356061 Functional Gain - CCDC170 ENSG00000120262 CDS Human protein_coding chr6:151907105 chr6:151907108 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_117115 0 0 0 0 1 CCDC170 chr6:151907024 3'AG 151907024 Downstream 85bp
chr1 238068830 238068830 1 + C G rs183919147 238068829 + 238068809 238068849 41 AAGGATGGATATTGGTCTCCCCGGAGTCGCTGACAGGGTTC AAGGATGGATATTGGTCTCCCGGGAGTCGCTGACAGGGTTC < 41bp 0.635467515266457 0.861129770261412 0.72683865 0.88048625 prediction 0.451324509989909 Functional Gain - LOC100130331 ENSG00000237250 ncRNA_exonic Human antisense chr1:238068829 chr1:238068830 . . 0 22 hm5C_associated_SNPs_117117 0 0 0 0 1 LOC100130331 chr1:238068901 5'GT 238068901 Upstream 72bp
chr11 61257273 61257273 1 + A G STAD 61257270 + 61257250 61257290 41 CCAGGTACTTTGAGAACATCCCCAAGGGTCTAGACCAGGAA CCAGGTACTTTGAGAACATCCCCGAGGGTCTAGACCAGGAA < 41bp 0.551367031982501 0.777028190167584 0.08082494 0.14391795 prediction 0.451322316370165 Functional Gain - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61257270 chr11:61257273 nonsynonymous SNV 0.824 2 24 hm5C_associated_SNPs_117118 0 0 0 0 1 PPP1R32 chr11:61257254 3'AG 61257254 Downstream 20bp
chr9 130151252 130151252 1 + C A UCEC 130151248 + 130151228 130151268 41 TCGTGGGCAGAAGCATCGAACGACCTCTGAAGTCACCCTTA TCGTGGGCAGAAGCATCGAACGACATCTGAAGTCACCCTTA < 41bp 0.305297400705867 0.725660926975089 0.14795864 0.23807275 prediction 0.451321853950178 Functional Gain - GARNL3 ENSG00000136895 CDS Human protein_coding chr9:130151248 chr9:130151252 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_117119 0 0 0 0 1 GARNL3 chr9:130151183 3'AG 130151183 Downstream 70bp
chr22 25603042 25603042 1 + C T DLBC 25603041 + 25603021 25603061 41 GGCTATGAGTTCCCCGGCTACCGTGGGCGCCAGTACGTGTT GGCTATGAGTTCCCCGGCTACTGTGGGCGCCAGTACGTGTT < 41bp 0.489705426998773 0.725656785176783 0.8557826 0.5403004 prediction 0.451313570353565 Functional Gain - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25603041 chr22:25603042 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_117121 0 0 0 0 1 CRYBB3 chr22:25603014 3'AG 25603014 Downstream 29bp
chr15 39877738 39877738 1 + A G KIRP 39877735 + 39877715 39877755 41 CTGCTCCAATGCCACAGTTCCTGATGGAGAATGCTGTCCTC CTGCTCCAATGCCACAGTTCCTGGTGGAGAATGCTGTCCTC < 41bp 0.481186963787853 0.725647222663929 0.17981735 0.44698903 prediction 0.451294445327857 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39877735 chr15:39877738 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_117124 0 0 1 0 2 THBS1 chr15:39877671 3'AG 39877671 Downstream 68bp
chr15 39877738 39877738 1 + A G KIRP 39877735 + 39877715 39877755 41 CTGCTCCAATGCCACAGTTCCTGATGGAGAATGCTGTCCTC CTGCTCCAATGCCACAGTTCCTGGTGGAGAATGCTGTCCTC < 41bp 0.481186963787853 0.725647222663929 0.17981735 0.44698903 prediction 0.451294445327857 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39877735 chr15:39877738 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_117124 0 0 1 0 2 THBS1 chr15:39877764 5'GT 39877764 Upstream 27bp
chr11 67257556 67257556 1 + C G rs2276020 67257552 + 67257532 67257572 41 GCAGGACCCATGGGCCATGACAGACGAAGAGAAGGCAAAGG GCAGGACCCATGGGCCATGACAGAGGAAGAGAAGGCAAAGG < 41bp 0.627788043229155 0.85343121933648 0.32352957 0.85806084 prediction 0.45128635221465 Functional Gain - AIP ENSG00000110711 CDS Human protein_coding chr11:67257552 chr11:67257556 nonsynonymous SNV 0.965 2 25 hm5C_associated_SNPs_117126 0 0 1 0 1 AIP chr11:67257509 3'AG 67257509 Downstream 48bp
chr15 39874116 39874116 1 + C A SARC 39874115 + 39874095 39874135 41 ATGCATGTGTGTGGCACCAACCGCATTCCAGGTGAGTTTGT ATGCATGTGTGTGGCACCAACAGCATTCCAGGTGAGTTTGT < 41bp 0.592834325400486 0.818475892867667 0.17726964 0.21905431 prediction 0.451283134934363 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39874115 chr15:39874116 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_117127 0 0 1 0 2 THBS1 chr15:39874030 3'AG 39874030 Downstream 87bp
chr15 39874116 39874116 1 + C A SARC 39874115 + 39874095 39874135 41 ATGCATGTGTGTGGCACCAACCGCATTCCAGGTGAGTTTGT ATGCATGTGTGTGGCACCAACAGCATTCCAGGTGAGTTTGT < 41bp 0.592834325400486 0.818475892867667 0.17726964 0.21905431 prediction 0.451283134934363 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39874115 chr15:39874116 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_117127 0 0 1 0 2 THBS1 chr15:39874125 5'GT 39874125 Upstream 10bp
chr7 44080697 44080697 1 + C G rs569523788 44080696 + 44080676 44080716 41 TCCCGGCCACCTGGGGACCACCGCAGGTCACATTGATCCTG TCCCGGCCACCTGGGGACCACGGCAGGTCACATTGATCCTG < 41bp 0.652687257781341 0.878327397760834 0.42671192 0.5256739 prediction 0.451280279958985 Functional Gain - LINC00957 ENSG00000235314 ncRNA_exonic Human lincRNA chr7:44080696 chr7:44080697 . . 0 22 hm5C_associated_SNPs_117128 0 0 0 2 1 LINC00957 chr7:44080701 5'GT 44080701 Upstream 5bp
chr1 170135832 170135832 1 + C G rs571875982 170135828 + 170135808 170135848 41 GTAGAAAGCTACCACTGCTACAGCCTGCAGGAATTCACACC GTAGAAAGCTACCACTGCTACAGCGTGCAGGAATTCACACC < 41bp 0.432185152976001 0.72562525953997 0.15078843 0.27341217 prediction 0.45125051907994 Functional Gain - METTL11B ENSG00000203740 CDS Human protein_coding chr1:170135828 chr1:170135832 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_117132 0 0 0 0 1 METTL11B chr1:170135892 5'GT 170135892 Upstream 61bp
chrX 67939098 67939098 1 + C A LUAD 67939094 + 67939074 67939114 41 CGTTGGCATAGCTTCCAGAACTCCCATCGTCCCAGCCTCAA CGTTGGCATAGCTTCCAGAACTCCAATCGTCCCAGCCTCAA < 41bp 0.272105121715793 0.725618292218262 0.15593237 0.9353926 prediction 0.451236584436524 Functional Gain - STARD8 ENSG00000130052 CDS Human protein_coding chrX:67939094 chrX:67939098 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_117135 0 0 0 0 1 STARD8 chrX:67939067 3'AG 67939067 Downstream 32bp
chr1 200860748 200860748 1 + C A COAD 200860747 + 200860727 200860767 41 CTCGGGGGGAGGGAAGATGGCCTGGACAAACAGGTCCTGAA CTCGGGGGGAGGGAAGATGGCATGGACAAACAGGTCCTGAA < 41bp 0.471619067311643 0.725617873544667 0.27159536 0.5153015 prediction 0.451235747089335 Functional Gain - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200860747 chr1:200860748 nonsynonymous SNV 0.101 1 22 hm5C_associated_SNPs_117136 0 0 0 0 1 C1orf106 chr1:200860829 5'GT 200860829 Upstream 82bp
chrX 155130211 155130211 1 + C T BRCA 155130210 + 155130190 155130230 41 CAAAGTGATGGAGACTCAAGCCCAAGTGGATGAACTGAAAG CAAAGTGATGGAGACTCAAGCTCAAGTGGATGAACTGAAAG < 41bp 0.468193590799763 0.725614923241125 0.10452631 0.20575052 prediction 0.45122984648225 Functional Gain - VAMP7 ENSG00000124333 CDS Human protein_coding chrX:155130210 chrX:155130211 synonymous SNV . 0 22 hm5C_associated_SNPs_117138 0 0 0 0 2 VAMP7 chrX:155130161 3'AG 155130161 Downstream 51bp
chrX 155130211 155130211 1 + C T BRCA 155130210 + 155130190 155130230 41 CAAAGTGATGGAGACTCAAGCCCAAGTGGATGAACTGAAAG CAAAGTGATGGAGACTCAAGCTCAAGTGGATGAACTGAAAG < 41bp 0.468193590799763 0.725614923241125 0.10452631 0.20575052 prediction 0.45122984648225 Functional Gain - VAMP7 ENSG00000124333 CDS Human protein_coding chrX:155130210 chrX:155130211 synonymous SNV . 0 22 hm5C_associated_SNPs_117138 0 0 0 0 2 VAMP7 chrX:155130251 5'GT 155130251 Upstream 41bp
chr17 79637320 79637320 1 + C A SKCM 79637319 + 79637299 79637339 41 GAGGAGCCCGACATCGCAGTCCCCAAGTTCAAACAGAGGAA GAGGAGCCCGACATCGCAGTCACCAAGTTCAAACAGAGGAA < 41bp 0.467981271948802 0.725612862410443 0.19391832 0.25168538 prediction 0.451225724820887 Functional Gain - CCDC137 ENSG00000185298 CDS Human protein_coding chr17:79637319 chr17:79637320 nonsynonymous SNV 0.727 5 22 hm5C_associated_SNPs_117139 0 0 1 0 1 CCDC137 chr17:79637255 3'AG 79637255 Downstream 66bp
chr2 79349167 79349167 1 + C T PRAD 79349166 + 79349146 79349186 41 GGTGTCTGTGCTCACCCAGGCCGAGGGTGCCTTTGTGGCCT GGTGTCTGTGCTCACCCAGGCTGAGGGTGCCTTTGTGGCCT < 41bp 0.501886505777807 0.72749916123352 0.44629148 0.1712004 prediction 0.451225310911424 Functional Gain - REG1A ENSG00000115386 CDS Human protein_coding chr2:79349166 chr2:79349167 synonymous SNV . 0 22 hm5C_associated_SNPs_117140 0 0 0 0 2 REG1A chr2:79349114 3'AG 79349114 Downstream 54bp
chr2 79349167 79349167 1 + C T PRAD 79349166 + 79349146 79349186 41 GGTGTCTGTGCTCACCCAGGCCGAGGGTGCCTTTGTGGCCT GGTGTCTGTGCTCACCCAGGCTGAGGGTGCCTTTGTGGCCT < 41bp 0.501886505777807 0.72749916123352 0.44629148 0.1712004 prediction 0.451225310911424 Functional Gain - REG1A ENSG00000115386 CDS Human protein_coding chr2:79349166 chr2:79349167 synonymous SNV . 0 22 hm5C_associated_SNPs_117140 0 0 0 0 2 REG1A chr2:79349251 5'GT 79349251 Upstream 85bp
chr1 166958710 166958710 1 + T A rs11578336 166958706 + 166958686 166958726 41 GCTGATGCCATCCCTTACTGCTCCTCAGACTGGGCGGTAAG GCTGATGCCATCCCTTACTGCTCCACAGACTGGGCGGTAAG < 41bp 0.389139082875957 0.725605342358423 0.16529742 0.89464045 prediction 0.451210684716845 Functional Gain - MAEL ENSG00000143194 CDS Human protein_coding chr1:166958706 chr1:166958710 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_117143 0 0 0 0 2 MAEL chr1:166958638 3'AG 166958638 Downstream 73bp
chr1 166958710 166958710 1 + T A rs11578336 166958706 + 166958686 166958726 41 GCTGATGCCATCCCTTACTGCTCCTCAGACTGGGCGGTAAG GCTGATGCCATCCCTTACTGCTCCACAGACTGGGCGGTAAG < 41bp 0.389139082875957 0.725605342358423 0.16529742 0.89464045 prediction 0.451210684716845 Functional Gain - MAEL ENSG00000143194 CDS Human protein_coding chr1:166958706 chr1:166958710 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_117143 0 0 0 0 2 MAEL chr1:166958721 5'GT 166958721 Upstream 12bp
chr6 16274725 16274725 1 + C T PCPG 16274724 + 16274704 16274744 41 TCATCAAAGTGGGAGTTGGACCAGGTAAGACTTGTTAGGAG TCATCAAAGTGGGAGTTGGACTAGGTAAGACTTGTTAGGAG < 41bp 0.550389983567125 0.775993807151325 0.8466933 0.25605434 prediction 0.4512076471684 Functional Gain - GMPR ENSG00000137198 CDS Human protein_coding chr6:16274724 chr6:16274725 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_117144 0 0 1 0 2 GMPR chr6:16274646 3'AG 16274646 Downstream 80bp
chr6 16274725 16274725 1 + C T PCPG 16274724 + 16274704 16274744 41 TCATCAAAGTGGGAGTTGGACCAGGTAAGACTTGTTAGGAG TCATCAAAGTGGGAGTTGGACTAGGTAAGACTTGTTAGGAG < 41bp 0.550389983567125 0.775993807151325 0.8466933 0.25605434 prediction 0.4512076471684 Functional Gain - GMPR ENSG00000137198 CDS Human protein_coding chr6:16274724 chr6:16274725 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_117144 0 0 1 0 2 GMPR chr6:16274727 5'GT 16274727 Upstream 3bp
chr4 3424231 3424231 1 + C T rs16844330 3424230 + 3424210 3424250 41 CTCCATCAAAGACATCCTGTCCGGACTCTGTGAGCGGCATG CTCCATCAAAGACATCCTGTCTGGACTCTGTGAGCGGCATG < 41bp 0.543202482862498 0.768805972936031 0.06578347 0.08233783 prediction 0.451206980147066 Functional Gain - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3424230 chr4:3424231 synonymous SNV . 0 22 hm5C_associated_SNPs_117145 0 0 0 0 1 RGS12 chr4:3424297 5'GT 3424297 Upstream 67bp
chr16 11769893 11769893 1 + C G rs8191327 11769892 + 11769872 11769912 41 CACCCCCAAAGTGCTGCCAGCCGAGGAAGCCCCCAGCACTG CACCCCCAAAGTGCTGCCAGCGGAGGAAGCCCCCAGCACTG < 41bp 0.482848720301138 0.725600603390907 0.8283948 0.9105477 prediction 0.451201206781814 Functional Gain - SNN ENSG00000184602 UTR5 Human protein_coding chr16:11769892 chr16:11769893 . . 0 22 hm5C_associated_SNPs_117146 0 0 1 0 1 SNN chr16:11769831 3'AG 11769831 Downstream 63bp
chr18 9533743 9533743 1 + C A SKCM 9533742 + 9533722 9533762 41 TGAGACTGAGGAGTACTCCTCCGAGAGCGAGAGCGAGAGTG TGAGACTGAGGAGTACTCCTCAGAGAGCGAGAGCGAGAGTG < 41bp 0.45768094742002 0.72559918902789 0.4739917 0.8762417 prediction 0.451198378055781 Functional Gain - RALBP1 ENSG00000017797 CDS Human protein_coding chr18:9533742 chr18:9533743 synonymous SNV . 0 22 hm5C_associated_SNPs_117147 0 0 1 0 2 RALBP1 chr18:9533701 3'AG 9533701 Downstream 43bp
chr18 9533743 9533743 1 + C A SKCM 9533742 + 9533722 9533762 41 TGAGACTGAGGAGTACTCCTCCGAGAGCGAGAGCGAGAGTG TGAGACTGAGGAGTACTCCTCAGAGAGCGAGAGCGAGAGTG < 41bp 0.45768094742002 0.72559918902789 0.4739917 0.8762417 prediction 0.451198378055781 Functional Gain - RALBP1 ENSG00000017797 CDS Human protein_coding chr18:9533742 chr18:9533743 synonymous SNV . 0 22 hm5C_associated_SNPs_117147 0 0 1 0 2 RALBP1 chr18:9533824 5'GT 9533824 Upstream 82bp
chr19 51298101 51298101 1 + A G UCEC 51298098 + 51298078 51298118 41 CCGCCCACCTGCCCCTGCCTCTCAGCCTCCCCGGGTGCCCG CCGCCCACCTGCCCCTGCCTCTCGGCCTCCCCGGGTGCCCG < 41bp 0.571983340066286 0.797574234756853 0.14117002 0.19901827 prediction 0.451181789381133 Functional Gain - ACPT ENSG00000142513 CDS Human protein_coding chr19:51298098 chr19:51298101 nonsynonymous SNV 0.054 0 24 hm5C_associated_SNPs_117149 0 0 0 0 1 ACPT chr19:51298043 3'AG 51298043 Downstream 59bp
chr2 272128 272128 1 + C T SKCM 272127 + 272107 272147 41 GCATGAAGAGGCACGGCATTCCCATGAGCCACGTTGCCCGG GCATGAAGAGGCACGGCATTCTCATGAGCCACGTTGCCCGG < 41bp 0.560292340046567 0.785878998860746 0.10685533 0.097151846 prediction 0.451173317628359 Functional Gain - ACP1 ENSG00000143727 CDS Human protein_coding chr2:272127 chr2:272128 nonsynonymous SNV 0.726 0 22 hm5C_associated_SNPs_117150 0 0 1 0 2 ACP1 chr2:272037 3'AG 272037 Downstream 92bp
chr2 272128 272128 1 + C T SKCM 272127 + 272107 272147 41 GCATGAAGAGGCACGGCATTCCCATGAGCCACGTTGCCCGG GCATGAAGAGGCACGGCATTCTCATGAGCCACGTTGCCCGG < 41bp 0.560292340046567 0.785878998860746 0.10685533 0.097151846 prediction 0.451173317628359 Functional Gain - ACP1 ENSG00000143727 CDS Human protein_coding chr2:272127 chr2:272128 nonsynonymous SNV 0.726 0 22 hm5C_associated_SNPs_117150 0 0 1 0 2 ACP1 chr2:272150 5'GT 272150 Upstream 23bp
chr22 31003297 31003297 1 + T G rs555008385 31003294 + 31003274 31003314 41 AGTCTTTCCCGATTCTTGCTCACTGCTCACCCACCTGCTGC AGTCTTTCCCGATTCTTGCTCACGGCTCACCCACCTGCTGC < 41bp 0.424281674695656 0.725586384641608 0.10539156 0.5788682 prediction 0.451172769283217 Functional Gain - TCN2 ENSG00000185339 UTR5 Human protein_coding chr22:31003294 chr22:31003297 . . 0 24 hm5C_associated_SNPs_117151 0 0 0 0 1 TCN2 chr22:31003382 5'GT 31003382 Upstream 86bp
chr3 49753345 49753345 1 + C A COAD 49753341 + 49753321 49753361 41 ACCTGCTTTGACCTCTCGGTCAGCCTGCTGCGTGTCTTGGA ACCTGCTTTGACCTCTCGGTCAGCATGCTGCGTGTCTTGGA < 41bp 0.306202229021876 0.72558505488524 0.27416492 0.29424345 prediction 0.451170109770481 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49753341 chr3:49753345 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_117152 0 0 1 1 2 RNF123 chr3:49753255 3'AG 49753255 Downstream 91bp
chr3 49753345 49753345 1 + C A COAD 49753341 + 49753321 49753361 41 ACCTGCTTTGACCTCTCGGTCAGCCTGCTGCGTGTCTTGGA ACCTGCTTTGACCTCTCGGTCAGCATGCTGCGTGTCTTGGA < 41bp 0.306202229021876 0.72558505488524 0.27416492 0.29424345 prediction 0.451170109770481 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49753341 chr3:49753345 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_117152 0 0 1 1 2 RNF123 chr3:49753443 5'GT 49753443 Upstream 99bp
chr1 47009402 47009402 1 + C A rs188939224 47009401 + 47009381 47009421 41 TCTGGGCACTGCTCCTGTCTCCTGGAGCTCAGGCTGGATGG TCTGGGCACTGCTCCTGTCTCATGGAGCTCAGGCTGGATGG < 41bp 0.578528340165839 0.804112086400095 0.34678763 0.7388265 prediction 0.451167492468513 Functional Gain - MKNK1-AS1 ENSG00000269956 ncRNA_exonic Human antisense chr1:47009401 chr1:47009402 . . 0 22 hm5C_associated_SNPs_117153 0 0 0 0 2 MKNK1-AS1 chr1:47009366 3'AG 47009366 Downstream 37bp
chr1 47009402 47009402 1 + C A rs188939224 47009401 + 47009381 47009421 41 TCTGGGCACTGCTCCTGTCTCCTGGAGCTCAGGCTGGATGG TCTGGGCACTGCTCCTGTCTCATGGAGCTCAGGCTGGATGG < 41bp 0.578528340165839 0.804112086400095 0.34678763 0.7388265 prediction 0.451167492468513 Functional Gain - MKNK1-AS1 ENSG00000269956 ncRNA_exonic Human antisense chr1:47009401 chr1:47009402 . . 0 22 hm5C_associated_SNPs_117153 0 0 0 0 2 MKNK1-AS1 chr1:47009440 5'GT 47009440 Upstream 39bp
chr11 71821156 71821156 1 - G A LUSC 71821157 - 71821137 71821177 41 TGAATGACTACAATGAGTCACCGGATGATGGAGAGGTCAAT TGAATGACTACAATGAGTCACTGGATGATGGAGAGGTCAAT < 41bp 0.57861071130546 0.804179694768461 0.17570475 0.05041787 prediction 0.451137966926002 Functional Gain - ANAPC15 ENSG00000110200 CDS Human protein_coding chr11:71821157 chr11:71821156 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_117161 1 0 1 0 1 ANAPC15 chr11:71821134 5'GT 71821134 Upstream 23bp
chr10 119001210 119001210 1 + C A LUSC 119001209 + 119001189 119001229 41 GCGGAGCCCCGGAGCCATGGCCCTGAGCGAGCTGGCGCTGG GCGGAGCCCCGGAGCCATGGCACTGAGCGAGCTGGCGCTGG < 41bp 0.562498399917563 0.788055875176188 0.33130914 0.43762428 prediction 0.451114950517251 Functional Gain - SLC18A2 ENSG00000165646 CDS Human antisense chr10:119001209 chr10:119001210 synonymous SNV . 0 22 hm5C_associated_SNPs_117167 0 0 0 0 1 SLC18A2 chr10:119001190 3'AG 119001190 Downstream 21bp
chr9 34972417 34972417 1 + C T COAD 34972416 + 34972396 34972436 41 CTTCCCGTGCAGGGTCTGCACCAGGGTTTTCCATGATGGCT CTTCCCGTGCAGGGTCTGCACTAGGGTTTTCCATGATGGCT < 41bp 0.562717054028273 0.788274073732968 0.91081953 0.36791128 prediction 0.45111403940939 Functional Gain - PHF24 ENSG00000122733 CDS Human protein_coding chr9:34972416 chr9:34972417 synonymous SNV . 0 22 hm5C_associated_SNPs_117169 0 0 0 0 1 PHF24 chr9:34972343 3'AG 34972343 Downstream 75bp
chr17 33326346 33326346 1 + C A UCEC 33326345 + 33326325 33326365 41 GGCGGCATGATGTCAATCTTCCTCATGGGCTGCTACGACCC GGCGGCATGATGTCAATCTTCATCATGGGCTGCTACGACCC < 41bp 0.578792237468504 0.804345631412027 0.017256677 0.038544476 prediction 0.451106787887048 Functional Gain - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33326345 chr17:33326346 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_117170 0 0 1 0 1 LIG3 chr17:33326326 3'AG 33326326 Downstream 21bp
chr10 22678127 22678127 1 + C G rs16922224 22678123 + 22678103 22678143 41 AGTTAACGCAGGAGGGGTTGCTGCCGTGATTGACTGCATTG AGTTAACGCAGGAGGGGTTGCTGCGGTGATTGACTGCATTG < 41bp 0.646032181653916 0.871578160310697 0.27296075 0.69840264 prediction 0.451091957313561 Functional Gain - SPAG6 ENSG00000077327 CDS Human protein_coding chr10:22678123 chr10:22678127 synonymous SNV . 0 25 hm5C_associated_SNPs_117174 0 0 0 0 1 SPAG6 chr10:22678089 3'AG 22678089 Downstream 39bp
chr1 171300829 171300829 1 + C T LUAD 171300828 + 171300808 171300848 41 CATAGTCAAGAGTACAAGATCCCAGAAGGCTTTCAGGGCAA CATAGTCAAGAGTACAAGATCTCAGAAGGCTTTCAGGGCAA < 41bp 0.467416272764621 0.725540871673738 0.071903735 0.0737991 prediction 0.451081743347477 Functional Gain - FMO4 ENSG00000076258 CDS Human protein_coding chr1:171300828 chr1:171300829 nonsynonymous SNV 0.976 2 22 hm5C_associated_SNPs_117175 0 0 0 0 2 FMO4 chr1:171300779 3'AG 171300779 Downstream 51bp
chr1 171300829 171300829 1 + C T LUAD 171300828 + 171300808 171300848 41 CATAGTCAAGAGTACAAGATCCCAGAAGGCTTTCAGGGCAA CATAGTCAAGAGTACAAGATCTCAGAAGGCTTTCAGGGCAA < 41bp 0.467416272764621 0.725540871673738 0.071903735 0.0737991 prediction 0.451081743347477 Functional Gain - FMO4 ENSG00000076258 CDS Human protein_coding chr1:171300828 chr1:171300829 nonsynonymous SNV 0.976 2 22 hm5C_associated_SNPs_117175 0 0 0 0 2 FMO4 chr1:171300921 5'GT 171300921 Upstream 93bp
chr7 73932595 73932595 1 + C T SKCM 73932594 + 73932574 73932614 41 GAAGGCCAGCCGAGTATGACCCCAAGGCCCTCATGGCCATC GAAGGCCAGCCGAGTATGACCTCAAGGCCCTCATGGCCATC < 41bp 0.597633537055678 0.823174134728336 0.48833847 0.25281483 prediction 0.451081195345317 Functional Gain - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73932594 chr7:73932595 nonsynonymous SNV 0.956 0 22 hm5C_associated_SNPs_117176 0 0 1 0 1 GTF2IRD1 chr7:73932652 5'GT 73932652 Upstream 58bp
chr5 172550130 172550130 1 + C T STAD 172550129 + 172550109 172550149 41 ATCAAGCAAGAGATTGTAAACCGGGTACAGAATCCAAGAGA ATCAAGCAAGAGATTGTAAACTGGGTACAGAATCCAAGAGA < 41bp 0.546191464960823 0.771724790505223 0.91689765 0.6607007 prediction 0.451066651088801 Functional Gain - CREBRF ENSG00000164463 CDS Human protein_coding chr5:172550129 chr5:172550130 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_117179 0 0 1 0 2 CREBRF chr5:172550083 3'AG 172550083 Downstream 48bp
chr5 172550130 172550130 1 + C T STAD 172550129 + 172550109 172550149 41 ATCAAGCAAGAGATTGTAAACCGGGTACAGAATCCAAGAGA ATCAAGCAAGAGATTGTAAACTGGGTACAGAATCCAAGAGA < 41bp 0.546191464960823 0.771724790505223 0.91689765 0.6607007 prediction 0.451066651088801 Functional Gain - CREBRF ENSG00000164463 CDS Human protein_coding chr5:172550129 chr5:172550130 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_117179 0 0 1 0 2 CREBRF chr5:172550205 5'GT 172550205 Upstream 76bp
chr3 14949168 14949168 1 + C G SARC 14949167 + 14949147 14949187 41 GAAAACCTGCAGAAGCTGGTCCACATTGAGCACAGCGTCCG GAAAACCTGCAGAAGCTGGTCGACATTGAGCACAGCGTCCG < 41bp 0.396897852307985 0.725509847081927 0.071418405 0.10264802 prediction 0.451019694163854 Functional Gain - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14949167 chr3:14949168 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_117183 0 0 0 0 1 FGD5 chr3:14949147 3'AG 14949147 Downstream 22bp
chr14 95110074 95110074 1 + C A LUSC 95110073 + 95110053 95110093 41 GTGGGACAGTCTGCTCAGGACCAGGTAGCCTGCACACAGCA GTGGGACAGTCTGCTCAGGACAAGGTAGCCTGCACACAGCA < 41bp 0.56010020255786 0.785609220745786 0.10726383 0.27257478 prediction 0.451018036375853 Functional Gain - SERPINA13P ENSG00000187483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr14:95110073 chr14:95110074 . . 0 22 hm5C_associated_SNPs_117184 0 0 0 0 1 SERPINA13P chr14:95110076 5'GT 95110076 Upstream 3bp
chr12 52309236 52309236 1 + C T UCEC 52309235 + 52309215 52309255 41 GCCCACCGCGACTTCAAGAGCCGCAATGTGCTGGTCAAGAG GCCCACCGCGACTTCAAGAGCTGCAATGTGCTGGTCAAGAG < 41bp 0.608742459845944 0.834249515369542 0.16312739 0.15903583 prediction 0.451014111047196 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309235 chr12:52309236 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_117185 0 0 0 0 1 ACVRL1 chr12:52309284 5'GT 52309284 Upstream 49bp
chr5 134011751 134011751 1 + A G LIHC 134011748 + 134011728 134011768 41 GCTGACTAGCATTCCTCAGACGCAGGCCTTATTGAATAAAG GCTGACTAGCATTCCTCAGACGCGGGCCTTATTGAATAAAG < 41bp 0.498410576378626 0.72550268789193 0.12644157 0.24087274 prediction 0.45100537578386 Functional Gain - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134011748 chr5:134011751 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_117188 0 0 1 0 2 SEC24A chr5:134011713 3'AG 134011713 Downstream 39bp
chr5 134011751 134011751 1 + A G LIHC 134011748 + 134011728 134011768 41 GCTGACTAGCATTCCTCAGACGCAGGCCTTATTGAATAAAG GCTGACTAGCATTCCTCAGACGCGGGCCTTATTGAATAAAG < 41bp 0.498410576378626 0.72550268789193 0.12644157 0.24087274 prediction 0.45100537578386 Functional Gain - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134011748 chr5:134011751 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_117188 0 0 1 0 2 SEC24A chr5:134011815 5'GT 134011815 Upstream 65bp
chr1 156761543 156761543 1 + C A rs35929266 156761539 + 156761519 156761559 41 CAGGACCCGGCCCTGGTCCCCCCCCAGGAAATTGCCCCAGA CAGGACCCGGCCCTGGTCCCCCCCAAGGAAATTGCCCCAGA < 41bp 0.293796979504476 0.72550250935451 0.038864106 0.0351035 prediction 0.45100501870902 Functional Gain - PRCC ENSG00000143294 CDS Human protein_coding chr1:156761539 chr1:156761543 nonsynonymous SNV 0.986 1 25 hm5C_associated_SNPs_117189 0 0 1 0 2 PRCC chr1:156761489 3'AG 156761489 Downstream 55bp
chr1 156761543 156761543 1 + C A rs35929266 156761539 + 156761519 156761559 41 CAGGACCCGGCCCTGGTCCCCCCCCAGGAAATTGCCCCAGA CAGGACCCGGCCCTGGTCCCCCCCAAGGAAATTGCCCCAGA < 41bp 0.293796979504476 0.72550250935451 0.038864106 0.0351035 prediction 0.45100501870902 Functional Gain - PRCC ENSG00000143294 CDS Human protein_coding chr1:156761539 chr1:156761543 nonsynonymous SNV 0.986 1 25 hm5C_associated_SNPs_117189 0 0 1 0 2 PRCC chr1:156761584 5'GT 156761584 Upstream 42bp
chr22 42970041 42970041 1 + A G rs145520668 42970038 + 42970018 42970058 41 GCTCCTTCTTACAGTGCACACACATGCTCCCAGCCCAGCTG GCTCCTTCTTACAGTGCACACACGTGCTCCCAGCCCAGCTG < 41bp 0.564395202041675 0.789896479320017 0.021300077 0.11847621 prediction 0.451002554556686 Functional Gain - SERHL2 ENSG00000183569 CDS Human protein_coding chr22:42970038 chr22:42970041 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_117190 0 0 0 0 1 SERHL2 chr22:42969942 3'AG 42969942 Downstream 100bp
chr1 164761751 164761751 1 + C T SKCM 164761750 + 164761730 164761770 41 GTTTTGAGTATCCGAGGAGCCCAGGAGGAGGAACCCACAGA GTTTTGAGTATCCGAGGAGCCTAGGAGGAGGAACCCACAGA < 41bp 0.530274167726038 0.755774126187243 0.78084695 0.8615171 prediction 0.450999916922411 Functional Gain - PBX1 ENSG00000185630 CDS Human protein_coding chr1:164761750 chr1:164761751 stopgain 1.000 1 22 hm5C_associated_SNPs_117191 0 0 0 0 1 PBX1 chr1:164761731 3'AG 164761731 Downstream 21bp
chr11 124749423 124749423 1 + C T SKCM 124749422 + 124749402 124749442 41 CAAGGACCCCGTGCTCGATTCCGGAAGAAACCCAAGGCTCT CAAGGACCCCGTGCTCGATTCTGGAAGAAACCCAAGGCTCT < 41bp 0.5854821044534 0.810977773585775 0.8988035 0.42274138 prediction 0.450991338264749 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124749422 chr11:124749423 nonsynonymous SNV 0.755 1 22 hm5C_associated_SNPs_117195 0 0 1 0 2 ROBO3 chr11:124749361 3'AG 124749361 Downstream 63bp
chr11 124749423 124749423 1 + C T SKCM 124749422 + 124749402 124749442 41 CAAGGACCCCGTGCTCGATTCCGGAAGAAACCCAAGGCTCT CAAGGACCCCGTGCTCGATTCTGGAAGAAACCCAAGGCTCT < 41bp 0.5854821044534 0.810977773585775 0.8988035 0.42274138 prediction 0.450991338264749 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124749422 chr11:124749423 nonsynonymous SNV 0.755 1 22 hm5C_associated_SNPs_117195 0 0 1 0 2 ROBO3 chr11:124749471 5'GT 124749471 Upstream 49bp
chr4 77228103 77228103 1 + A G UCEC 77228100 + 77228080 77228120 41 ATCAGAGTGGCAGCAGCGGACTGAGCCCTGGACCTTCCGGG ATCAGAGTGGCAGCAGCGGACTGGGCCCTGGACCTTCCGGG < 41bp 0.565353571098383 0.790843789017196 0.58977187 0.85804486 prediction 0.450980435837627 Functional Gain - STBD1 ENSG00000118804 CDS Human protein_coding chr4:77228100 chr4:77228103 nonsynonymous SNV 0.116 0 24 hm5C_associated_SNPs_117196 0 0 0 0 1 STBD1 chr4:77228142 5'GT 77228142 Upstream 40bp
chr1 1222152 1222152 1 + A G PAAD 1222149 + 1222129 1222169 41 CCAGGGCCCTGCGTCCCAGGCCGAGTCCGGTCCTCCGCCAT CCAGGGCCCTGCGTCCCAGGCCGGGTCCGGTCCTCCGCCAT < 41bp 0.470157810371275 0.725489698565214 0.71487 0.9233649 prediction 0.450979397130428 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1222149 chr1:1222152 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_117197 0 0 0 0 1 SCNN1D chr1:1222148 3'AG 1222148 Downstream 5bp
chr22 29694744 29694744 1 + C T COAD 29694743 + 29694723 29694763 41 GTCCAGGAGGCCCAGGAGGTCCTGGGGGACCCATGGGTCGC GTCCAGGAGGCCCAGGAGGTCTTGGGGGACCCATGGGTCGC < 41bp 0.563238392435351 0.78872348123037 0.8106771 0.6756587 prediction 0.450970177590037 Functional Gain - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29694743 chr22:29694744 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_117198 0 0 1 0 1 EWSR1 chr22:29694723 3'AG 29694723 Downstream 22bp
chr22 31655931 31655931 1 + A G LIHC 31655928 + 31655908 31655948 41 CATGTTTGAGAGACTCTCCACAGAGTCTGTTCAGGAGCAGC CATGTTTGAGAGACTCTCCACAGGGTCTGTTCAGGAGCAGC < 41bp 0.479724064488811 0.72546737283987 0.15393588 0.3160388 prediction 0.45093474567974 Functional Gain - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31655928 chr22:31655931 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_117204 0 0 1 0 1 LIMK2 chr22:31655875 3'AG 31655875 Downstream 57bp
chr2 79348699 79348699 1 + C A LUAD 79348698 + 79348678 79348718 41 TCTTTTTCAGGCCAAGAGGCCCAGACAGAGTTGCCCCAGGC TCTTTTTCAGGCCAAGAGGCCAAGACAGAGTTGCCCCAGGC < 41bp 0.586731630596948 0.812194390235456 0.10638404 0.30284876 prediction 0.450925519277017 Functional Gain - REG1A ENSG00000115386 CDS Human protein_coding chr2:79348698 chr2:79348699 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_117207 0 0 0 0 1 REG1A chr2:79348688 3'AG 79348688 Downstream 12bp
chr15 55647046 55647046 1 + T G SKCM 55647044 + 55647024 55647064 41 TTTCTCCAGTGCCCGCCAGACCTGACTGGAAAAAGTCATTA TTTCTCCAGTGCCCGCCAGACCGGACTGGAAAAAGTCATTA < 41bp 0.386305981051085 0.725460990487575 0.043176085 0.11380783 prediction 0.450921980975149 Functional Gain - PIGB ENSG00000069943 CDS Human protein_coding chr15:55647044 chr15:55647046 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_117208 0 0 0 0 1 PIGB chr15:55646996 3'AG 55646996 Downstream 51bp
chr12 56630767 56630767 1 + C A UCEC 56630763 + 56630743 56630783 41 CGGCCTCAGTACCACCTTAGCGGTCTTCTGCCATGAGCTGC CGGCCTCAGTACCACCTTAGCGGTATTCTGCCATGAGCTGC < 41bp 0.310214629894285 0.725458544127278 0.6071798 0.77724487 prediction 0.450917088254556 Functional Gain - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56630763 chr12:56630767 synonymous SNV . 0 25 hm5C_associated_SNPs_117210 0 0 1 0 2 SLC39A5 chr12:56630715 3'AG 56630715 Downstream 53bp
chr12 56630767 56630767 1 + C A UCEC 56630763 + 56630743 56630783 41 CGGCCTCAGTACCACCTTAGCGGTCTTCTGCCATGAGCTGC CGGCCTCAGTACCACCTTAGCGGTATTCTGCCATGAGCTGC < 41bp 0.310214629894285 0.725458544127278 0.6071798 0.77724487 prediction 0.450917088254556 Functional Gain - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56630763 chr12:56630767 synonymous SNV . 0 25 hm5C_associated_SNPs_117210 0 0 1 0 2 SLC39A5 chr12:56630795 5'GT 56630795 Upstream 29bp
chr11 45832350 45832350 1 + C T SKCM 45832349 + 45832329 45832369 41 GGCTTCTGGCTTGGTGTGGACCAGGAGGGGGCAGAAGGCAC GGCTTCTGGCTTGGTGTGGACTAGGAGGGGGCAGAAGGCAC < 41bp 0.521041420103387 0.746499718991802 0.5424697 0.73173445 prediction 0.450916597776831 Functional Gain - SLC35C1 ENSG00000181830 CDS Human protein_coding chr11:45832349 chr11:45832350 stopgain 0.997 1 22 hm5C_associated_SNPs_117212 0 0 0 0 1 SLC35C1 chr11:45832327 3'AG 45832327 Downstream 24bp
chr12 57863480 57863480 1 + C T UCEC 57863479 + 57863459 57863499 41 ACTGCCCAGCTTGTCCCACACCGGTGAGACCTGGGTGTGGG ACTGCCCAGCTTGTCCCACACTGGTGAGACCTGGGTGTGGG < 41bp 0.558228669569849 0.783686522395958 0.38761616 0.30065042 prediction 0.450915705652218 Functional Gain - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57863479 chr12:57863480 synonymous SNV . 0 22 hm5C_associated_SNPs_117213 0 0 0 0 1 GLI1 chr12:57863481 5'GT 57863481 Upstream 2bp
chr1 151536461 151536461 1 + C T SKCM 151536460 + 151536440 151536480 41 AAGAGTGAGGTCCAGTACATCCAGGAGGTGGGCACCCCTTA AAGAGTGAGGTCCAGTACATCTAGGAGGTGGGCACCCCTTA < 41bp 0.570418091186294 0.795865646623325 0.3801732 0.30437404 prediction 0.450895110874062 Functional Gain - TUFT1 ENSG00000143367 CDS Human protein_coding chr1:151536460 chr1:151536461 stopgain 0.999 1 22 hm5C_associated_SNPs_117217 0 0 1 0 2 TUFT1 chr1:151536380 3'AG 151536380 Downstream 82bp
chr1 151536461 151536461 1 + C T SKCM 151536460 + 151536440 151536480 41 AAGAGTGAGGTCCAGTACATCCAGGAGGTGGGCACCCCTTA AAGAGTGAGGTCCAGTACATCTAGGAGGTGGGCACCCCTTA < 41bp 0.570418091186294 0.795865646623325 0.3801732 0.30437404 prediction 0.450895110874062 Functional Gain - TUFT1 ENSG00000143367 CDS Human protein_coding chr1:151536460 chr1:151536461 stopgain 0.999 1 22 hm5C_associated_SNPs_117217 0 0 1 0 2 TUFT1 chr1:151536466 5'GT 151536466 Upstream 6bp
chr7 80290501 80290501 1 + T C COAD 80290499 + 80290479 80290519 41 GTTGGAACAGAGGCTGACAACTTCACAGTTCTCAATCTGGC GTTGGAACAGAGGCTGACAACTCCACAGTTCTCAATCTGGC < 41bp 0.430789042574036 0.725440855883379 0.16944474 0.93261033 prediction 0.450881711766759 Functional Gain - CD36 ENSG00000135218 CDS Human protein_coding chr7:80290499 chr7:80290501 nonsynonymous SNV 0.398 0 23 hm5C_associated_SNPs_117220 0 0 0 0 1 CD36 chr7:80290526 5'GT 80290526 Upstream 26bp
chr3 9731824 9731824 1 + C T SKCM 9731823 + 9731803 9731843 41 GTCCCCTGGAGGTCCCCAAACCCAGGTGAGGAGCTCCAAAG GTCCCCTGGAGGTCCCCAAACTCAGGTGAGGAGCTCCAAAG < 41bp 0.462003915933658 0.725439604758934 0.65919626 0.42397943 prediction 0.450879209517867 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9731823 chr3:9731824 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_117221 0 0 1 0 1 MTMR14 chr3:9731827 5'GT 9731827 Upstream 4bp
chr1 178491534 178491534 1 + C A LUAD 178491533 + 178491513 178491553 41 ACCACCCAACCTTCTGTGGGCCACGCTGTGCCTGCCCCAAA ACCACCCAACCTTCTGTGGGCAACGCTGTGCCTGCCCCAAA < 41bp 0.527067695103342 0.75250567558641 0.017133236 0.06443009 prediction 0.450875960966136 Functional Gain - TEX35 ENSG00000240021 CDS Human protein_coding chr1:178491533 chr1:178491534 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_117222 0 0 0 0 1 TEX35 chr1:178491460 3'AG 178491460 Downstream 75bp
chr11 2937951 2937951 1 + C G rs141958733 2937947 + 2937927 2937967 41 CAGCACCAAAGGGGCCAAAACTGACGCCCAGGCTCCACTGC CAGCACCAAAGGGGCCAAAACTGAGGCCCAGGCTCCACTGC < 41bp 0.638977885164725 0.864415382554713 0.8011763 0.909498 prediction 0.450874994779975 Functional Gain - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2937947 chr11:2937951 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_117223 0 0 0 0 2 SLC22A18 chr11:2937852 3'AG 2937852 Downstream 100bp
chr11 2937951 2937951 1 + C G rs141958733 2937947 + 2937927 2937967 41 CAGCACCAAAGGGGCCAAAACTGACGCCCAGGCTCCACTGC CAGCACCAAAGGGGCCAAAACTGAGGCCCAGGCTCCACTGC < 41bp 0.638977885164725 0.864415382554713 0.8011763 0.909498 prediction 0.450874994779975 Functional Gain - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2937947 chr11:2937951 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_117223 0 0 0 0 2 SLC22A18 chr11:2937970 5'GT 2937970 Upstream 20bp
chr8 26505224 26505224 1 + C T BLCA 26505223 + 26505203 26505243 41 AAAGTCTTCAACCTTTACCCCCGGAAAGGCCGCATTGCTGT AAAGTCTTCAACCTTTACCCCTGGAAAGGCCGCATTGCTGT < 41bp 0.460170137114677 0.725434208346096 0.19092217 0.35178384 prediction 0.450868416692191 Functional Gain - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26505223 chr8:26505224 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_117226 0 0 1 0 1 DPYSL2 chr8:26505146 3'AG 26505146 Downstream 79bp
chr22 41489047 41489047 1 + C G LUAD 41489043 + 41489023 41489063 41 GGTGGAACCGGGGCCGCCTTCAGCCAAGCGGCCTAAACTCT GGTGGAACCGGGGCCGCCTTCAGCGAAGCGGCCTAAACTCT < 41bp 0.43791312371718 0.725429355913438 0.81519747 0.88579273 prediction 0.450858711826876 Functional Gain - EP300 ENSG00000100393 CDS Human protein_coding chr22:41489043 chr22:41489047 synonymous SNV . 0 25 hm5C_associated_SNPs_117231 0 0 1 0 1 EP300 chr22:41489102 5'GT 41489102 Upstream 56bp
chr16 2436251 2436251 1 + C A UCEC 2436247 + 2436227 2436267 41 CATCGGCATCGCCCTCATCGCAGGCTCCAAGGTGCGGCGGT CATCGGCATCGCCCTCATCGCAGGATCCAAGGTGCGGCGGT < 41bp 0.690017425042988 0.915444743145346 0.56984586 0.78809834 prediction 0.450854636204716 Functional Gain - ABCA17P ENSG00000238098 ncRNA_exonic Human transcribed_unitary_pseudogene chr16:2436247 chr16:2436251 . . 0 25 hm5C_associated_SNPs_117234 0 0 0 0 1 ABCA17P chr16:2436257 5'GT 2436257 Upstream 7bp
chr4 77192910 77192910 1 + C T UCEC 77192909 + 77192889 77192929 41 CTAGGCTATGAGAGGAAACTCCAGAAACCACAGGTAATTGC CTAGGCTATGAGAGGAAACTCTAGAAACCACAGGTAATTGC < 41bp 0.540817463251057 0.76624388695221 0.5737084 0.68190086 prediction 0.450852847402305 Functional Gain - FAM47E;FAM47E-STBD1 ENSG00000189157;ENSG00000272414 CDS Human other chr4:77192909 chr4:77192910 stopgain 0.768 0 22 hm5C_associated_SNPs_117235 0 0 0 0 1 FAM47E;FAM47E-STBD1 chr4:77192921 5'GT 77192921 Upstream 12bp
chr1 203015058 203015058 1 + T C STAD 203015056 + 203015036 203015076 41 AGCGTGAGGCAACATCCATCCATGACCTCAATGACAAGCTG AGCGTGAGGCAACATCCATCCACGACCTCAATGACAAGCTG < 41bp 0.441598693148044 0.725419108329398 0.3594424 0.43336403 prediction 0.450838216658796 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203015056 chr1:203015058 synonymous SNV . 0 23 hm5C_associated_SNPs_117238 0 0 0 0 2 PPFIA4 chr1:203014969 3'AG 203014969 Downstream 90bp
chr1 203015058 203015058 1 + T C STAD 203015056 + 203015036 203015076 41 AGCGTGAGGCAACATCCATCCATGACCTCAATGACAAGCTG AGCGTGAGGCAACATCCATCCACGACCTCAATGACAAGCTG < 41bp 0.441598693148044 0.725419108329398 0.3594424 0.43336403 prediction 0.450838216658796 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203015056 chr1:203015058 synonymous SNV . 0 23 hm5C_associated_SNPs_117238 0 0 0 0 2 PPFIA4 chr1:203015115 5'GT 203015115 Upstream 58bp
chr6 71566697 71566697 1 + T C CESC 71566694 + 71566674 71566714 41 CCAAAGACTCCATCTTATCTCTGTATGGCACAGGAACCATT CCAAAGACTCCATCTTATCTCTGCATGGCACAGGAACCATT < 41bp 0.528061041822952 0.753476468769412 0.054360896 0.16505438 prediction 0.45083085389292 Functional Gain - SMAP1 ENSG00000112305 CDS Human protein_coding chr6:71566694 chr6:71566697 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_117239 0 0 1 0 1 SMAP1 chr6:71566733 5'GT 71566733 Upstream 37bp
chr1 175087876 175087876 1 + A G STAD 175087873 + 175087853 175087893 41 GCAGCACTGTCCTGACGGGCCTGAGGCCGGGCATGGAGTAC GCAGCACTGTCCTGACGGGCCTGGGGCCGGGCATGGAGTAC < 41bp 0.561180568824159 0.786587382392513 0.28980896 0.4856475 prediction 0.450813627136709 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175087873 chr1:175087876 nonsynonymous SNV 0.508 3 24 hm5C_associated_SNPs_117241 0 0 0 0 1 TNN chr1:175087960 5'GT 175087960 Upstream 85bp
chr20 55020983 55020983 1 + C T COAD 55020982 + 55020962 55021002 41 CTCACGCTTCCCAGACCTGTCCGGGCCTCACTGCCGACTCT CTCACGCTTCCCAGACCTGTCTGGGCCTCACTGCCGACTCT < 41bp 0.529291002168954 0.754694947713809 0.95492065 0.9494639 prediction 0.450807891089709 Functional Gain - CASS4 ENSG00000087589 CDS Human protein_coding chr20:55020982 chr20:55020983 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_117242 0 0 1 0 2 CASS4 chr20:55020956 3'AG 55020956 Downstream 28bp
chr20 55020983 55020983 1 + C T COAD 55020982 + 55020962 55021002 41 CTCACGCTTCCCAGACCTGTCCGGGCCTCACTGCCGACTCT CTCACGCTTCCCAGACCTGTCTGGGCCTCACTGCCGACTCT < 41bp 0.529291002168954 0.754694947713809 0.95492065 0.9494639 prediction 0.450807891089709 Functional Gain - CASS4 ENSG00000087589 CDS Human protein_coding chr20:55020982 chr20:55020983 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_117242 0 0 1 0 2 CASS4 chr20:55021057 5'GT 55021057 Upstream 75bp
chr6 26407991 26407991 1 + C T SKCM 26407990 + 26407970 26408010 41 ACTGGCTGGTACCCCCAACCCCAAATACAGTGGAGCAACAA ACTGGCTGGTACCCCCAACCCTAAATACAGTGGAGCAACAA < 41bp 0.590360436873066 0.815758890627234 0.33271545 0.36508244 prediction 0.450796907508337 Functional Gain - BTN3A1 ENSG00000026950 CDS Human protein_coding chr6:26407990 chr6:26407991 stopgain 0.006 0 22 hm5C_associated_SNPs_117244 0 0 1 0 1 BTN3A1 chr6:26407899 3'AG 26407899 Downstream 93bp
chr11 89868803 89868803 1 + C T SKCM 89868802 + 89868782 89868822 41 TATACGGTGGAAACTGGTATCCGAAATGAAAGCTGAAAACA TATACGGTGGAAACTGGTATCTGAAATGAAAGCTGAAAACA < 41bp 0.550142109254752 0.775537138367802 0.537398 0.33195576 prediction 0.450790058226102 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89868802 chr11:89868803 synonymous SNV . 0 22 hm5C_associated_SNPs_117245 0 0 0 0 2 NAALAD2 chr11:89868727 3'AG 89868727 Downstream 77bp
chr11 89868803 89868803 1 + C T SKCM 89868802 + 89868782 89868822 41 TATACGGTGGAAACTGGTATCCGAAATGAAAGCTGAAAACA TATACGGTGGAAACTGGTATCTGAAATGAAAGCTGAAAACA < 41bp 0.550142109254752 0.775537138367802 0.537398 0.33195576 prediction 0.450790058226102 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89868802 chr11:89868803 synonymous SNV . 0 22 hm5C_associated_SNPs_117245 0 0 0 0 2 NAALAD2 chr11:89868838 5'GT 89868838 Upstream 36bp
chr12 58090147 58090147 1 + C T UCEC 58090146 + 58090126 58090166 41 TAATGGGAGGCCCCGGGAGGCCGAGGTTCGGGTGAGTCTTG TAATGGGAGGCCCCGGGAGGCTGAGGTTCGGGTGAGTCTTG < 41bp 0.508785522145179 0.734176797720389 0.7880255 0.8598857 prediction 0.45078255115042 Functional Gain - OS9 ENSG00000135506 CDS Human protein_coding chr12:58090146 chr12:58090147 synonymous SNV . 0 22 hm5C_associated_SNPs_117246 0 0 1 0 2 OS9 chr12:58090058 3'AG 58090058 Downstream 90bp
chr12 58090147 58090147 1 + C T UCEC 58090146 + 58090126 58090166 41 TAATGGGAGGCCCCGGGAGGCCGAGGTTCGGGTGAGTCTTG TAATGGGAGGCCCCGGGAGGCTGAGGTTCGGGTGAGTCTTG < 41bp 0.508785522145179 0.734176797720389 0.7880255 0.8598857 prediction 0.45078255115042 Functional Gain - OS9 ENSG00000135506 CDS Human protein_coding chr12:58090146 chr12:58090147 synonymous SNV . 0 22 hm5C_associated_SNPs_117246 0 0 1 0 2 OS9 chr12:58090156 5'GT 58090156 Upstream 10bp
chr8 43048914 43048914 1 + C A STAD 43048913 + 43048893 43048933 41 TGTTAAGGTACTTTACCACACCGAGGTGGCCTATGACCCCG TGTTAAGGTACTTTACCACACAGAGGTGGCCTATGACCCCG < 41bp 0.594969514223818 0.820358248378733 0.069429696 0.19248256 prediction 0.450777468309829 Functional Gain - HGSNAT ENSG00000165102 CDS Human protein_coding chr8:43048913 chr8:43048914 synonymous SNV . 0 22 hm5C_associated_SNPs_117247 0 0 1 0 2 HGSNAT chr8:43048900 3'AG 43048900 Downstream 15bp
chr8 43048914 43048914 1 + C A STAD 43048913 + 43048893 43048933 41 TGTTAAGGTACTTTACCACACCGAGGTGGCCTATGACCCCG TGTTAAGGTACTTTACCACACAGAGGTGGCCTATGACCCCG < 41bp 0.594969514223818 0.820358248378733 0.069429696 0.19248256 prediction 0.450777468309829 Functional Gain - HGSNAT ENSG00000165102 CDS Human protein_coding chr8:43048913 chr8:43048914 synonymous SNV . 0 22 hm5C_associated_SNPs_117247 0 0 1 0 2 HGSNAT chr8:43048986 5'GT 43048986 Upstream 73bp
chr5 147593525 147593525 1 + A G COAD 147593522 + 147593502 147593542 41 GGTCTACTGCACTCGGGAATCTAACCCACACTGTGGCTCTG GGTCTACTGCACTCGGGAATCTAGCCCACACTGTGGCTCTG < 41bp 0.524614556505591 0.749990975755438 0.104787916 0.3459506 prediction 0.450752838499693 Functional Gain - SPINK6 ENSG00000178172 CDS Human protein_coding chr5:147593522 chr5:147593525 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_117252 0 0 1 0 1 SPINK6 chr5:147593473 3'AG 147593473 Downstream 53bp
chr11 43469611 43469611 1 + C T CESC 43469610 + 43469590 43469630 41 CCGGACGAATGCCTCAAACTCCGCTGGGTAGAGCTGACTGC CCGGACGAATGCCTCAAACTCTGCTGGGTAGAGCTGACTGC < 41bp 0.462134416838406 0.72537573808056 0.31415588 0.22733968 prediction 0.45075147616112 Functional Gain - TTC17 ENSG00000052841 CDS Human protein_coding chr11:43469610 chr11:43469611 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_117253 0 0 1 0 2 TTC17 chr11:43469552 3'AG 43469552 Downstream 60bp
chr11 43469611 43469611 1 + C T CESC 43469610 + 43469590 43469630 41 CCGGACGAATGCCTCAAACTCCGCTGGGTAGAGCTGACTGC CCGGACGAATGCCTCAAACTCTGCTGGGTAGAGCTGACTGC < 41bp 0.462134416838406 0.72537573808056 0.31415588 0.22733968 prediction 0.45075147616112 Functional Gain - TTC17 ENSG00000052841 CDS Human protein_coding chr11:43469610 chr11:43469611 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_117253 0 0 1 0 2 TTC17 chr11:43469672 5'GT 43469672 Upstream 62bp
chr2 202344789 202344789 1 + T G UCEC 202344786 + 202344766 202344806 41 AAGCCAGGATTCAATACTTTCACTGTTGCCTCCTGCTTATA AAGCCAGGATTCAATACTTTCACGGTTGCCTCCTGCTTATA < 41bp 0.348389647367869 0.725370422513071 0.14292824 0.44814017 prediction 0.450740845026142 Functional Gain - STRADB ENSG00000082146 CDS Human protein_coding chr2:202344786 chr2:202344789 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_117255 0 0 1 0 2 STRADB chr2:202344731 3'AG 202344731 Downstream 59bp
chr2 202344789 202344789 1 + T G UCEC 202344786 + 202344766 202344806 41 AAGCCAGGATTCAATACTTTCACTGTTGCCTCCTGCTTATA AAGCCAGGATTCAATACTTTCACGGTTGCCTCCTGCTTATA < 41bp 0.348389647367869 0.725370422513071 0.14292824 0.44814017 prediction 0.450740845026142 Functional Gain - STRADB ENSG00000082146 CDS Human protein_coding chr2:202344786 chr2:202344789 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_117255 0 0 1 0 2 STRADB chr2:202344755 3'AG 202344755 Downstream 35bp
chr19 55418081 55418081 1 + C T UCEC 55418080 + 55418060 55418100 41 TACATCCCGGACATGAACTCCCGCATGGCAGGGCAATACAG TACATCCCGGACATGAACTCCTGCATGGCAGGGCAATACAG < 41bp 0.469387250592672 0.725359869965121 0.031446695 0.25895363 prediction 0.450719739930242 Functional Gain - NCR1 ENSG00000189430 CDS Human protein_coding chr19:55418080 chr19:55418081 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_117261 0 0 0 0 1 NCR1 chr19:55418165 5'GT 55418165 Upstream 85bp
chr2 220134935 220134935 1 + C A LUSC 220134934 + 220134914 220134954 41 CTTTGAACAGGCACATACCGCCAGATCTTCCATCCAGAGCA CTTTGAACAGGCACATACCGCAAGATCTTCCATCCAGAGCA < 41bp 0.571968837090021 0.797328531046471 0.30615085 0.15356484 prediction 0.450719387912901 Functional Gain - TUBA4B ENSG00000243910 ncRNA_exonic Human protein_coding chr2:220134934 chr2:220134935 . . 0 22 hm5C_associated_SNPs_117262 0 0 0 0 1 TUBA4B chr2:220134924 3'AG 220134924 Downstream 12bp
chr7 99703094 99703094 1 + C T COAD 99703093 + 99703073 99703113 41 TGTGATGCGGTACCAACTCTCCGATGACCTCCCCTCACCGC TGTGATGCGGTACCAACTCTCTGATGACCTCCCCTCACCGC < 41bp 0.56165595911441 0.787008665223133 0.7192098 0.22845712 prediction 0.450705412217447 Functional Gain - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99703093 chr7:99703094 synonymous SNV . 0 22 hm5C_associated_SNPs_117265 0 0 0 0 2 AP4M1 chr7:99703068 3'AG 99703068 Downstream 27bp
chr7 99703094 99703094 1 + C T COAD 99703093 + 99703073 99703113 41 TGTGATGCGGTACCAACTCTCCGATGACCTCCCCTCACCGC TGTGATGCGGTACCAACTCTCTGATGACCTCCCCTCACCGC < 41bp 0.56165595911441 0.787008665223133 0.7192098 0.22845712 prediction 0.450705412217447 Functional Gain - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99703093 chr7:99703094 synonymous SNV . 0 22 hm5C_associated_SNPs_117265 0 0 0 0 2 AP4M1 chr7:99703162 5'GT 99703162 Upstream 69bp
chrX 10094175 10094175 1 + C A BLCA 10094174 + 10094154 10094194 41 CCACATCCGAGTCTATTTGCCCCCACTGGACTCGGGCACGC CCACATCCGAGTCTATTTGCCACCACTGGACTCGGGCACGC < 41bp 0.585981383593621 0.811326326147538 0.008121371 0.029040813 prediction 0.450689885107836 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10094174 chrX:10094175 synonymous SNV . 0 22 hm5C_associated_SNPs_117266 0 0 0 0 1 WWC3 chrX:10094154 3'AG 10094154 Downstream 22bp
chr20 9496928 9496928 1 + C T LUSC 9496927 + 9496907 9496947 41 GCCACAACATGTCCAAGGGACCTGAGGCGACTTGGAGGCTG GCCACAACATGTCCAAGGGACTTGAGGCGACTTGGAGGCTG < 41bp 0.573923711669464 0.799264187052769 0.3238746 0.40548927 prediction 0.45068095076661 Functional Gain - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9496927 chr20:9496928 nonsynonymous SNV 0.986 0 22 hm5C_associated_SNPs_117268 0 0 1 0 2 LAMP5 chr20:9496903 3'AG 9496903 Downstream 26bp
chr20 9496928 9496928 1 + C T LUSC 9496927 + 9496907 9496947 41 GCCACAACATGTCCAAGGGACCTGAGGCGACTTGGAGGCTG GCCACAACATGTCCAAGGGACTTGAGGCGACTTGGAGGCTG < 41bp 0.573923711669464 0.799264187052769 0.3238746 0.40548927 prediction 0.45068095076661 Functional Gain - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9496927 chr20:9496928 nonsynonymous SNV 0.986 0 22 hm5C_associated_SNPs_117268 0 0 1 0 2 LAMP5 chr20:9497008 5'GT 9497008 Upstream 81bp
chr3 9746616 9746616 1 + C A UCEC 9746612 + 9746592 9746632 41 GATTGATAACACGCTGAACCCAGACTTCGTGCGCAAATTCG GATTGATAACACGCTGAACCCAGAATTCGTGCGCAAATTCG < 41bp 0.306568754543708 0.725335854612199 0.07352018 0.32279375 prediction 0.450671709224397 Functional Gain - CPNE9 ENSG00000144550 CDS Human protein_coding chr3:9746612 chr3:9746616 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_117270 0 0 0 0 2 CPNE9 chr3:9746575 3'AG 9746575 Downstream 42bp
chr3 9746616 9746616 1 + C A UCEC 9746612 + 9746592 9746632 41 GATTGATAACACGCTGAACCCAGACTTCGTGCGCAAATTCG GATTGATAACACGCTGAACCCAGAATTCGTGCGCAAATTCG < 41bp 0.306568754543708 0.725335854612199 0.07352018 0.32279375 prediction 0.450671709224397 Functional Gain - CPNE9 ENSG00000144550 CDS Human protein_coding chr3:9746612 chr3:9746616 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_117270 0 0 0 0 2 CPNE9 chr3:9746678 5'GT 9746678 Upstream 63bp
chr1 156169930 156169930 1 + C T UCEC 156169929 + 156169909 156169949 41 GTCACCACTTATGAGCTCACCCGGAAGTTTGTAGCTGACTA GTCACCACTTATGAGCTCACCTGGAAGTTTGTAGCTGACTA < 41bp 0.570979214018073 0.796311577143042 0.4782961 0.4190666 prediction 0.450664726249936 Functional Gain - SLC25A44 ENSG00000160785 CDS Human protein_coding chr1:156169929 chr1:156169930 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_117271 0 0 1 0 1 SLC25A44 chr1:156170019 5'GT 156170019 Upstream 90bp
chr11 89896504 89896504 1 + C A LUAD 89896503 + 89896483 89896523 41 TATGTTATTCTGGGAGGTCACCGGGACTCCTGGGTATTTGG TATGTTATTCTGGGAGGTCACAGGGACTCCTGGGTATTTGG < 41bp 0.582545447919602 0.807875529750718 0.91952324 0.91567737 prediction 0.450660163662233 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89896503 chr11:89896504 synonymous SNV . 0 22 hm5C_associated_SNPs_117273 0 0 0 0 2 NAALAD2 chr11:89896478 3'AG 89896478 Downstream 27bp
chr11 89896504 89896504 1 + C A LUAD 89896503 + 89896483 89896523 41 TATGTTATTCTGGGAGGTCACCGGGACTCCTGGGTATTTGG TATGTTATTCTGGGAGGTCACAGGGACTCCTGGGTATTTGG < 41bp 0.582545447919602 0.807875529750718 0.91952324 0.91567737 prediction 0.450660163662233 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89896503 chr11:89896504 synonymous SNV . 0 22 hm5C_associated_SNPs_117273 0 0 0 0 2 NAALAD2 chr11:89896597 5'GT 89896597 Upstream 94bp
chr1 12169661 12169661 1 + C T UCEC 12169660 + 12169640 12169680 41 ACGGTCTGTGAGCCGGCTTCCCCAGGGGTCAGCCCTGCCTG ACGGTCTGTGAGCCGGCTTCCTCAGGGGTCAGCCCTGCCTG < 41bp 0.567191162801497 0.792520531375922 0.08507526 0.049488425 prediction 0.450658737148851 Functional Gain - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12169660 chr1:12169661 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_117274 0 0 0 0 2 TNFRSF8 chr1:12169623 3'AG 12169623 Downstream 39bp
chr1 12169661 12169661 1 + C T UCEC 12169660 + 12169640 12169680 41 ACGGTCTGTGAGCCGGCTTCCCCAGGGGTCAGCCCTGCCTG ACGGTCTGTGAGCCGGCTTCCTCAGGGGTCAGCCCTGCCTG < 41bp 0.567191162801497 0.792520531375922 0.08507526 0.049488425 prediction 0.450658737148851 Functional Gain - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12169660 chr1:12169661 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_117274 0 0 0 0 2 TNFRSF8 chr1:12169713 5'GT 12169713 Upstream 53bp
chr1 1267099 1267099 1 + C A THCA 1267098 + 1267078 1267118 41 CAACAAGTCGGATCTGCTGCCCGGGCTGCGCCTGGGCTACG CAACAAGTCGGATCTGCTGCCAGGGCTGCGCCTGGGCTACG < 41bp 0.589851374090547 0.815180233424396 0.54505503 0.9081243 prediction 0.450657718667697 Functional Gain - TAS1R3 ENSG00000169962 CDS Human protein_coding chr1:1267098 chr1:1267099 synonymous SNV . 0 22 hm5C_associated_SNPs_117275 0 0 0 0 1 TAS1R3 chr1:1267018 3'AG 1267018 Downstream 82bp
chr3 14509682 14509682 1 + A G LUSC 14509679 + 14509659 14509699 41 TTCCATCCTGGGCTTCATGGCACAAGAGCAAGGGGTGGACA TTCCATCCTGGGCTTCATGGCACGAGAGCAAGGGGTGGACA < 41bp 0.534017417334241 0.759344257722122 0.3706693 0.5833707 prediction 0.450653680775763 Functional Gain - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14509679 chr3:14509682 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_117276 0 0 1 0 2 SLC6A6 chr3:14509596 3'AG 14509596 Downstream 87bp
chr3 14509682 14509682 1 + A G LUSC 14509679 + 14509659 14509699 41 TTCCATCCTGGGCTTCATGGCACAAGAGCAAGGGGTGGACA TTCCATCCTGGGCTTCATGGCACGAGAGCAAGGGGTGGACA < 41bp 0.534017417334241 0.759344257722122 0.3706693 0.5833707 prediction 0.450653680775763 Functional Gain - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14509679 chr3:14509682 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_117276 0 0 1 0 2 SLC6A6 chr3:14509720 5'GT 14509720 Upstream 39bp
chr9 133553993 133553993 1 + C T rs7021384 133553992 + 133553972 133554012 41 CCTGGGGATCCCAGGTGTGCCCGGGCTAGAGGAGGACCAGA CCTGGGGATCCCAGGTGTGCCTGGGCTAGAGGAGGACCAGA < 41bp 0.523926629099512 0.749250989954577 0.8413018 0.833192 prediction 0.45064872171013 Functional Gain - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133553992 chr9:133553993 synonymous SNV . 0 22 hm5C_associated_SNPs_117278 0 0 0 0 2 PRDM12 chr9:133553916 3'AG 133553916 Downstream 78bp
chr9 133553993 133553993 1 + C T rs7021384 133553992 + 133553972 133554012 41 CCTGGGGATCCCAGGTGTGCCCGGGCTAGAGGAGGACCAGA CCTGGGGATCCCAGGTGTGCCTGGGCTAGAGGAGGACCAGA < 41bp 0.523926629099512 0.749250989954577 0.8413018 0.833192 prediction 0.45064872171013 Functional Gain - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133553992 chr9:133553993 synonymous SNV . 0 22 hm5C_associated_SNPs_117278 0 0 0 0 2 PRDM12 chr9:133554027 5'GT 133554027 Upstream 35bp
chr2 233652033 233652033 1 + A G LIHC 233652030 + 233652010 233652050 41 ATGGAGAGAGGTGGCGACCTCACAGTCCTGGTAAGAATTCT ATGGAGAGAGGTGGCGACCTCACGGTCCTGGTAAGAATTCT < 41bp 0.504518091777502 0.729838701263975 0.30145717 0.50438666 prediction 0.450641218972946 Functional Gain - GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233652030 chr2:233652033 nonsynonymous SNV 0.968 2 24 hm5C_associated_SNPs_117279 0 0 1 0 1 GIGYF2 chr2:233652039 5'GT 233652039 Upstream 7bp
chr11 75508220 75508220 1 + C T SKCM 75508219 + 75508199 75508239 41 TCAGGTATCTGCCCTGTCAGCCGGGACACCATAGACTATTT TCAGGTATCTGCCCTGTCAGCTGGGACACCATAGACTATTT < 41bp 0.561829117284218 0.787149039618062 0.826682 0.8388232 prediction 0.450639844667689 Functional Gain - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75508219 chr11:75508220 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_117280 0 0 0 0 1 DGAT2 chr11:75508203 3'AG 75508203 Downstream 18bp
chr5 178987121 178987121 1 + C T GBM 178987120 + 178987100 178987140 41 CAGTCGGCTCTGAGCCTGGGCCGCAGCCTGGATGCGGACCA CAGTCGGCTCTGAGCCTGGGCTGCAGCCTGGATGCGGACCA < 41bp 0.553782325714886 0.779098131112105 0.28321058 0.17247501 prediction 0.450631610794437 Functional Gain - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:178987120 chr5:178987121 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_117282 0 0 1 0 2 RUFY1 chr5:178987026 3'AG 178987026 Downstream 96bp
chr5 178987121 178987121 1 + C T GBM 178987120 + 178987100 178987140 41 CAGTCGGCTCTGAGCCTGGGCCGCAGCCTGGATGCGGACCA CAGTCGGCTCTGAGCCTGGGCTGCAGCCTGGATGCGGACCA < 41bp 0.553782325714886 0.779098131112105 0.28321058 0.17247501 prediction 0.450631610794437 Functional Gain - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:178987120 chr5:178987121 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_117282 0 0 1 0 2 RUFY1 chr5:178987199 5'GT 178987199 Upstream 79bp
chr12 124092052 124092052 1 + A G KICH 124092049 + 124092029 124092069 41 CGAGGTCCTGTCGCATTTCACGAAGCACTTCCCCGAGTTCA CGAGGTCCTGTCGCATTTCACGAGGCACTTCCCCGAGTTCA < 41bp 0.489345203316724 0.725313483684578 0.8903231 0.93094885 prediction 0.450626967369156 Functional Gain - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124092049 chr12:124092052 nonsynonymous SNV 0.905 0 24 hm5C_associated_SNPs_117283 0 0 1 0 2 DDX55 chr12:124091979 3'AG 124091979 Downstream 74bp
chr12 124092052 124092052 1 + A G KICH 124092049 + 124092029 124092069 41 CGAGGTCCTGTCGCATTTCACGAAGCACTTCCCCGAGTTCA CGAGGTCCTGTCGCATTTCACGAGGCACTTCCCCGAGTTCA < 41bp 0.489345203316724 0.725313483684578 0.8903231 0.93094885 prediction 0.450626967369156 Functional Gain - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124092049 chr12:124092052 nonsynonymous SNV 0.905 0 24 hm5C_associated_SNPs_117283 0 0 1 0 2 DDX55 chr12:124092070 5'GT 124092070 Upstream 19bp
chr1 100436133 100436133 1 + A G rs11166383 100436130 + 100436110 100436150 41 GTTGAGCCCTGTGGTAGGCACAGATGCACCCGACCAGCACC GTTGAGCCCTGTGGTAGGCACAGGTGCACCCGACCAGCACC < 41bp 0.563230554795767 0.788539835674063 0.22569823 0.47385356 prediction 0.450618561756591 Functional Gain - SLC35A3 ENSG00000117620 CDS Human protein_coding chr1:100436130 chr1:100436133 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_117285 0 0 0 0 1 SLC35A3 chr1:100436200 5'GT 100436200 Upstream 68bp
chr9 136259429 136259429 1 + A G LUAD 136259426 + 136259406 136259446 41 TTTTACCAACAGACCCCTTTCGTAAGTCCTGGATGGCCCCT TTTTACCAACAGACCCCTTTCGTGAGTCCTGGATGGCCCCT < 41bp 0.485300778092272 0.725306917047318 0.04351914 0.22053966 prediction 0.450613834094636 Functional Gain - STKLD1 ENSG00000198870 CDS Human protein_coding chr9:136259426 chr9:136259429 nonsynonymous SNV 0.611 1 24 hm5C_associated_SNPs_117286 0 0 0 0 1 STKLD1 chr9:136259418 3'AG 136259418 Downstream 12bp
chr3 10970933 10970933 1 + C T SKCM 10970932 + 10970912 10970952 41 ACCGCCGTGGTGGACATGTACCCCAAGGTTTTCCGGAGGGG ACCGCCGTGGTGGACATGTACTCCAAGGTTTTCCGGAGGGG < 41bp 0.471028316177132 0.725303407396701 0.047447562 0.93499255 prediction 0.450606814793402 Functional Gain - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10970932 chr3:10970933 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_117287 0 0 1 0 2 SLC6A11 chr3:10970888 3'AG 10970888 Downstream 46bp
chr3 10970933 10970933 1 + C T SKCM 10970932 + 10970912 10970952 41 ACCGCCGTGGTGGACATGTACCCCAAGGTTTTCCGGAGGGG ACCGCCGTGGTGGACATGTACTCCAAGGTTTTCCGGAGGGG < 41bp 0.471028316177132 0.725303407396701 0.047447562 0.93499255 prediction 0.450606814793402 Functional Gain - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10970932 chr3:10970933 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_117287 0 0 1 0 2 SLC6A11 chr3:10971025 5'GT 10971025 Upstream 93bp
chr16 23364199 23364199 1 + A G KICH 23364196 + 23364176 23364216 41 CCTGGAGAGAATCCTGGCTCCTGAGCTAAGCCATGCCAATG CCTGGAGAGAATCCTGGCTCCTGGGCTAAGCCATGCCAATG < 41bp 0.554740075024112 0.780042224398055 0.21255374 0.6677419 prediction 0.450604298747887 Functional Gain - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23364196 chr16:23364199 nonsynonymous SNV 0.084 0 24 hm5C_associated_SNPs_117288 0 0 0 0 1 SCNN1B chr16:23364122 3'AG 23364122 Downstream 78bp
chr6 108687531 108687531 1 + C A SKCM 108687530 + 108687510 108687550 41 TGGCAACATCCAACAGGCCACCGGAAGGTAAAAACAAACAT TGGCAACATCCAACAGGCCACAGGAAGGTAAAAACAAACAT < 41bp 0.463865909430313 0.725299217366716 0.053754807 0.02946055 prediction 0.450598434733433 Functional Gain - AFG1L ENSG00000135537 CDS Human protein_coding chr6:108687530 chr6:108687531 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_117293 0 0 1 0 2 AFG1L chr6:108687437 3'AG 108687437 Downstream 95bp
chr6 108687531 108687531 1 + C A SKCM 108687530 + 108687510 108687550 41 TGGCAACATCCAACAGGCCACCGGAAGGTAAAAACAAACAT TGGCAACATCCAACAGGCCACAGGAAGGTAAAAACAAACAT < 41bp 0.463865909430313 0.725299217366716 0.053754807 0.02946055 prediction 0.450598434733433 Functional Gain - AFG1L ENSG00000135537 CDS Human protein_coding chr6:108687530 chr6:108687531 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_117293 0 0 1 0 2 AFG1L chr6:108687536 5'GT 108687536 Upstream 6bp
chr5 23522816 23522816 1 + C G HNSC 23522815 + 23522795 23522835 41 GTGCAGTGGACAAGGGGCACCCCAACCGTTCAGCCCTCAGT GTGCAGTGGACAAGGGGCACCGCAACCGTTCAGCCCTCAGT < 41bp 0.395524030596363 0.725292933845961 0.015304714 0.040379345 prediction 0.450585867691922 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23522815 chr5:23522816 nonsynonymous SNV 0.058 2 22 hm5C_associated_SNPs_117295 0 0 0 0 1 PRDM9 chr5:23522723 3'AG 23522723 Downstream 94bp
chr1 46871162 46871162 1 + C T BRCA 46871161 + 46871141 46871181 41 CCTTCGTGCACACCAATGTTCCACAGTCCATGTTCAGGTTG CCTTCGTGCACACCAATGTTCTACAGTCCATGTTCAGGTTG < 41bp 0.571347745720553 0.796639260622742 0.076483786 0.088358074 prediction 0.450583029804377 Functional Gain - FAAH ENSG00000117480 CDS Human protein_coding chr1:46871161 chr1:46871162 nonsynonymous SNV 0.972 4 22 hm5C_associated_SNPs_117296 0 0 0 0 1 FAAH chr1:46871177 5'GT 46871177 Upstream 16bp
chr2 233925277 233925277 1 + T C LUSC 233925275 + 233925255 233925295 41 GGCAAGGACGGGAGCTTCCTCGTGCGTGCCAGCGAGTCCAT GGCAAGGACGGGAGCTTCCTCGCGCGTGCCAGCGAGTCCAT < 41bp 0.551867386174502 0.777154793675724 0.75508755 0.88342154 prediction 0.450574815002444 Functional Gain - INPP5D ENSG00000168918 CDS Human protein_coding chr2:233925275 chr2:233925277 nonsynonymous SNV 0.989 5 23 hm5C_associated_SNPs_117298 0 0 1 0 1 INPP5D chr2:233925322 5'GT 233925322 Upstream 46bp
chr12 6884528 6884528 1 + C T UCEC 6884527 + 6884507 6884547 41 CTGCCTGCTGGTGTGGGGACCCGGTCTTTCCTCACTGCCAA CTGCCTGCTGGTGTGGGGACCTGGTCTTTCCTCACTGCCAA < 41bp 0.526862842730388 0.752135150997581 0.2230505 0.2730748 prediction 0.450544616534385 Functional Gain - LAG3 ENSG00000089692 CDS Human protein_coding chr12:6884527 chr12:6884528 nonsynonymous SNV 0.064 1 22 hm5C_associated_SNPs_117301 0 0 0 0 1 LAG3 chr12:6884439 3'AG 6884439 Downstream 90bp
chr7 151065965 151065965 1 + C T UCEC 151065964 + 151065944 151065984 41 GCGGCCACTCATATTACCAACCGCAGAGAGGTACCCACTTT GCGGCCACTCATATTACCAACTGCAGAGAGGTACCCACTTT < 41bp 0.534731866942786 0.759994696121853 0.25548714 0.8186113 prediction 0.450525658358134 Functional Gain - NUB1 ENSG00000013374 CDS Human protein_coding chr7:151065964 chr7:151065965 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_117303 0 0 1 0 1 NUB1 chr7:151065973 5'GT 151065973 Upstream 9bp
chr3 110831176 110831176 1 + C T SKCM 110831175 + 110831155 110831195 41 ATCTGCAAAGCTGTTACATTCCCGCTTGGAAATGCCCAGTC ATCTGCAAAGCTGTTACATTCTCGCTTGGAAATGCCCAGTC < 41bp 0.580955955037452 0.806212127845905 0.050328404 0.25344032 prediction 0.450512345616906 Functional Gain - NECTIN3 ENSG00000177707 CDS Human protein_coding chr3:110831175 chr3:110831176 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_117306 0 0 1 0 1 NECTIN3 chr3:110831218 5'GT 110831218 Upstream 43bp
chr16 57789045 57789045 1 + C T SKCM 57789044 + 57789024 57789064 41 CTTTCAGCTGGAGGTCCTGCCCCGGCCCCCAGTGGTTGCTT CTTTCAGCTGGAGGTCCTGCCTCGGCCCCCAGTGGTTGCTT < 41bp 0.546579618322243 0.771826191519121 0.13047186 0.1708926 prediction 0.450493146393754 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57789044 chr16:57789045 synonymous SNV . 0 22 hm5C_associated_SNPs_117308 0 0 0 0 1 KATNB1 chr16:57789031 3'AG 57789031 Downstream 15bp
chr2 242152030 242152030 1 + C T COAD 242152029 + 242152009 242152049 41 TACCACACCTTGTTTGGAGTCCGCAATGAGGAGGTGAGTGT TACCACACCTTGTTTGGAGTCTGCAATGAGGAGGTGAGTGT < 41bp 0.469241163351118 0.725240880757332 0.36886907 0.6990722 prediction 0.450481761514664 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242152029 chr2:242152030 nonsynonymous SNV 0.839 3 22 hm5C_associated_SNPs_117311 0 0 0 0 2 ANO7 chr2:242151987 3'AG 242151987 Downstream 44bp
chr2 242152030 242152030 1 + C T COAD 242152029 + 242152009 242152049 41 TACCACACCTTGTTTGGAGTCCGCAATGAGGAGGTGAGTGT TACCACACCTTGTTTGGAGTCTGCAATGAGGAGGTGAGTGT < 41bp 0.469241163351118 0.725240880757332 0.36886907 0.6990722 prediction 0.450481761514664 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242152029 chr2:242152030 nonsynonymous SNV 0.839 3 22 hm5C_associated_SNPs_117311 0 0 0 0 2 ANO7 chr2:242152041 5'GT 242152041 Upstream 12bp
chr16 75256679 75256679 1 + C T STAD 75256678 + 75256658 75256698 41 CCCCCCAGGCTGCGGGGTCCCCGCCATCCACCCTGTGCTCA CCCCCCAGGCTGCGGGGTCCCTGCCATCCACCCTGTGCTCA < 41bp 0.536514232201142 0.761749698433976 0.028235197 0.017130405 prediction 0.450470932465668 Functional Gain - CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256678 chr16:75256679 synonymous SNV . 0 22 hm5C_associated_SNPs_117312 0 0 0 0 2 CTRB1 chr16:75256666 3'AG 75256666 Downstream 14bp
chr16 75256679 75256679 1 + C T STAD 75256678 + 75256658 75256698 41 CCCCCCAGGCTGCGGGGTCCCCGCCATCCACCCTGTGCTCA CCCCCCAGGCTGCGGGGTCCCTGCCATCCACCCTGTGCTCA < 41bp 0.536514232201142 0.761749698433976 0.028235197 0.017130405 prediction 0.450470932465668 Functional Gain - CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256678 chr16:75256679 synonymous SNV . 0 22 hm5C_associated_SNPs_117312 0 0 0 0 2 CTRB1 chr16:75256769 5'GT 75256769 Upstream 91bp
chr12 56963712 56963712 1 + T C LUAD 56963710 + 56963690 56963730 41 CTTTGTAGATTTTGACAGCCCTTCAGCAGCACAGAAAGCTG CTTTGTAGATTTTGACAGCCCTCCAGCAGCACAGAAAGCTG < 41bp 0.416735759387317 0.725230108625295 0.074688375 0.92662835 prediction 0.450460217250589 Functional Gain - RBMS2 ENSG00000076067 CDS Human protein_coding chr12:56963710 chr12:56963712 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_117315 0 0 0 0 2 RBMS2 chr12:56963683 3'AG 56963683 Downstream 30bp
chr12 56963712 56963712 1 + T C LUAD 56963710 + 56963690 56963730 41 CTTTGTAGATTTTGACAGCCCTTCAGCAGCACAGAAAGCTG CTTTGTAGATTTTGACAGCCCTCCAGCAGCACAGAAAGCTG < 41bp 0.416735759387317 0.725230108625295 0.074688375 0.92662835 prediction 0.450460217250589 Functional Gain - RBMS2 ENSG00000076067 CDS Human protein_coding chr12:56963710 chr12:56963712 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_117315 0 0 0 0 2 RBMS2 chr12:56963774 5'GT 56963774 Upstream 63bp
chr6 16145463 16145463 1 + T C LUSC 16145461 + 16145441 16145481 41 CTGAAGGAAGCCATGCTGTGCATGGTGTGCTGCGAGGAGGA CTGAAGGAAGCCATGCTGTGCACGGTGTGCTGCGAGGAGGA < 41bp 0.455672694285731 0.725209306351103 0.13521633 0.09869918 prediction 0.450418612702207 Functional Gain - MYLIP ENSG00000007944 CDS Human protein_coding chr6:16145461 chr6:16145463 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_117321 0 0 1 0 1 MYLIP chr6:16145548 5'GT 16145548 Upstream 86bp
chr1 32677383 32677383 1 + T G LUAD 32677380 + 32677360 32677400 41 AGGGTCCTCCCGTGACTCGCCACTTGTGTGATGGGGCCATT AGGGTCCTCCCGTGACTCGCCACGTGTGTGATGGGGCCATT < 41bp 0.326916231213998 0.725199581632276 0.31666246 0.89560664 prediction 0.450399163264551 Functional Gain - DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32677380 chr1:32677383 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_117327 0 0 0 0 1 DCDC2B chr1:32677438 5'GT 32677438 Upstream 56bp
chr15 20489435 20489435 1 + C A UCEC 20489434 + 20489414 20489454 41 ACTCAAGTGTCACTGAAGGACCAGATCACCAGTGGAAAACA ACTCAAGTGTCACTGAAGGACAAGATCACCAGTGGAAAACA < 41bp 0.568112252363888 0.793309685814703 0.11162594 0.09530637 prediction 0.45039486690163 Functional Gain - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20489434 chr15:20489435 . . 0 22 hm5C_associated_SNPs_117328 0 0 0 2 2 CHEK2P2 chr15:20489408 3'AG 20489408 Downstream 28bp
chr15 20489435 20489435 1 + C A UCEC 20489434 + 20489414 20489454 41 ACTCAAGTGTCACTGAAGGACCAGATCACCAGTGGAAAACA ACTCAAGTGTCACTGAAGGACAAGATCACCAGTGGAAAACA < 41bp 0.568112252363888 0.793309685814703 0.11162594 0.09530637 prediction 0.45039486690163 Functional Gain - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20489434 chr15:20489435 . . 0 22 hm5C_associated_SNPs_117328 0 0 0 2 2 CHEK2P2 chr15:20489495 5'GT 20489495 Upstream 61bp
chr19 57999333 57999333 1 + C G rs113628862 57999329 + 57999309 57999349 41 ACAGGCTCCGATGGCGGCGGCCGCCCTGAGGGACCCCGCTC ACAGGCTCCGATGGCGGCGGCCGCGCTGAGGGACCCCGCTC < 41bp 0.431187151630527 0.725195829980244 0.0504795 0.16301915 prediction 0.450391659960488 Functional Gain - ZNF419 ENSG00000105136;ENSG00000268107 CDS Human other chr19:57999329 chr19:57999333 synonymous SNV . 0 25 hm5C_associated_SNPs_117329 0 0 1 0 1 ZNF419 chr19:57999351 5'GT 57999351 Upstream 19bp
chr6 36178238 36178238 1 + C T COAD 36178237 + 36178217 36178257 41 AGAGAACATCGGCTATGACCCCGAGAGGGGCACTCACCTGC AGAGAACATCGGCTATGACCCTGAGAGGGGCACTCACCTGC < 41bp 0.568864650433001 0.794056856921975 0.6459422 0.38115475 prediction 0.450384412977948 Functional Gain - BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36178237 chr6:36178238 synonymous SNV . 0 22 hm5C_associated_SNPs_117333 0 0 1 0 1 BRPF3 chr6:36178305 5'GT 36178305 Upstream 68bp
chr9 137019627 137019627 1 + C T COAD 137019626 + 137019606 137019646 41 TGTCTTTTGTGAAGTTCTCCCCGAACGGCAAATACATCCTG TGTCTTTTGTGAAGTTCTCCCTGAACGGCAAATACATCCTG < 41bp 0.461344712381323 0.725169127048857 0.055261344 0.04636708 prediction 0.450338254097714 Functional Gain - WDR5 ENSG00000196363 CDS Human protein_coding chr9:137019626 chr9:137019627 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_117339 0 0 1 0 2 WDR5 chr9:137019588 3'AG 137019588 Downstream 40bp
chr9 137019627 137019627 1 + C T COAD 137019626 + 137019606 137019646 41 TGTCTTTTGTGAAGTTCTCCCCGAACGGCAAATACATCCTG TGTCTTTTGTGAAGTTCTCCCTGAACGGCAAATACATCCTG < 41bp 0.461344712381323 0.725169127048857 0.055261344 0.04636708 prediction 0.450338254097714 Functional Gain - WDR5 ENSG00000196363 CDS Human protein_coding chr9:137019626 chr9:137019627 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_117339 0 0 1 0 2 WDR5 chr9:137019663 5'GT 137019663 Upstream 37bp
chr8 9564484 9564484 1 + C T OV 9564483 + 9564463 9564503 41 CTGTGGATATGGCTCCAACTCCGGAGCTTAGGGAGAGATTG CTGTGGATATGGCTCCAACTCTGGAGCTTAGGGAGAGATTG < 41bp 0.561227870647932 0.786376691906857 0.9027076 0.3149585 prediction 0.45029764251785 Functional Gain - TNKS ENSG00000173273 CDS Human protein_coding chr8:9564483 chr8:9564484 nonsynonymous SNV 0.888 2 22 hm5C_associated_SNPs_117344 0 0 1 0 1 TNKS chr8:9564507 5'GT 9564507 Upstream 24bp
chr3 140397360 140397360 1 + C T PAAD 140397359 + 140397339 140397379 41 TACTATGAGAGCCGCTGCTGCCGCAATACCATCATCACTTT TACTATGAGAGCCGCTGCTGCTGCAATACCATCATCACTTT < 41bp 0.554934189937297 0.780061165219331 0.28523153 0.3708923 prediction 0.45025395056407 Functional Gain - TRIM42 ENSG00000155890 CDS Human protein_coding chr3:140397359 chr3:140397360 nonsynonymous SNV 0.915 3 22 hm5C_associated_SNPs_117351 0 0 0 0 1 TRIM42 chr3:140397412 5'GT 140397412 Upstream 53bp
chr6 43497019 43497019 1 + A G CESC 43497016 + 43496996 43497036 41 ATTTGCTGGCTGCGGTGGCTCACACCTGTAATCCCAGCACT ATTTGCTGGCTGCGGTGGCTCACGCCTGTAATCCCAGCACT < 41bp 0.476454843891576 0.725110759144293 0.035209596 0.06915262 prediction 0.450221518288586 Functional Gain - POLR1C ENSG00000171453 CDS Human protein_coding chr6:43497016 chr6:43497019 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_117355 0 0 0 0 1 POLR1C chr6:43496987 3'AG 43496987 Downstream 33bp
chr1 46977812 46977812 1 + T C rs61751016 46977810 + 46977790 46977830 41 CGTCCCCGCTGAGCCTCTTCCGTCTGCAGGAGCAATTCCGC CGTCCCCGCTGAGCCTCTTCCGCCTGCAGGAGCAATTCCGC < 41bp 0.46439103842947 0.72510469198982 0.2659654 0.27325207 prediction 0.450209383979641 Functional Gain - DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46977810 chr1:46977812 synonymous SNV . 0 23 hm5C_associated_SNPs_117358 0 0 0 0 1 DMBX1 chr1:46977715 3'AG 46977715 Downstream 98bp
chr22 41918965 41918965 1 + C T UCEC 41918964 + 41918944 41918984 41 ACTCCAGGTTCCGAGCAGATCCGCGCCACCATTGAGCGGGA ACTCCAGGTTCCGAGCAGATCTGCGCCACCATTGAGCGGGA < 41bp 0.578180201875453 0.803283330761446 0.33036935 0.3475155 prediction 0.450206257771987 Functional Gain - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41918964 chr22:41918965 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_117359 0 0 1 0 1 ACO2 chr22:41918991 5'GT 41918991 Upstream 27bp
chr19 1047284 1047284 1 + C A ACC 1047280 + 1047260 1047300 41 CTCCCGCGCCAACCTGGCTGCGGCCTGCGGCGGCCTGGCCT CTCCCGCGCCAACCTGGCTGCGGCATGCGGCGGCCTGGCCT < 41bp 0.316328913202988 0.725101643630328 0.9137136 0.9283674 prediction 0.450203287260656 Functional Gain - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1047280 chr19:1047284 synonymous SNV . 0 25 hm5C_associated_SNPs_117360 0 0 0 0 1 ABCA7 chr19:1047377 5'GT 1047377 Upstream 94bp
chr6 88125541 88125541 1 + C T rs78331220 88125540 + 88125520 88125560 41 ATTATCAGCTATGTGTTACTCCGCTCTGGCCTTGGATCCCC ATTATCAGCTATGTGTTACTCTGCTCTGGCCTTGGATCCCC < 41bp 0.561373885090115 0.786471748106911 0.039001316 0.110435665 prediction 0.450195726033592 Functional Gain - CFAP206 ENSG00000213204;ENSG00000272514 CDS Human other chr6:88125540 chr6:88125541 nonsynonymous SNV 0.076 1 22 hm5C_associated_SNPs_117361 0 0 0 0 1 CFAP206 chr6:88125592 5'GT 88125592 Upstream 52bp
chr18 23738201 23738201 1 + C A UCEC 23738197 + 23738177 23738217 41 CAGATCCTTCTGGTACTTATCATGCTTGGAAGGTGAGTCAT CAGATCCTTCTGGTACTTATCATGATTGGAAGGTGAGTCAT < 41bp 0.330509262902681 0.725097288825634 0.39490575 0.45453328 prediction 0.450194577651267 Functional Gain - PSMA8 ENSG00000154611 CDS Human protein_coding chr18:23738197 chr18:23738201 nonsynonymous SNV 0.969 1 25 hm5C_associated_SNPs_117362 0 0 0 0 1 PSMA8 chr18:23738208 5'GT 23738208 Upstream 8bp
chr12 7477186 7477186 1 + C T GBM 7477185 + 7477165 7477205 41 GTCAGTAGTCCAGATCAAATCCGCGGAGAGGTAGATGAATG GTCAGTAGTCCAGATCAAATCTGCGGAGAGGTAGATGAATG < 41bp 0.544764970661449 0.769861798792419 0.47274488 0.27433926 prediction 0.450193656261941 Functional Gain - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7477185 chr12:7477186 nonsynonymous SNV 0.987 3 22 hm5C_associated_SNPs_117363 0 0 0 0 2 ACSM4 chr12:7477095 3'AG 7477095 Downstream 92bp
chr12 7477186 7477186 1 + C T GBM 7477185 + 7477165 7477205 41 GTCAGTAGTCCAGATCAAATCCGCGGAGAGGTAGATGAATG GTCAGTAGTCCAGATCAAATCTGCGGAGAGGTAGATGAATG < 41bp 0.544764970661449 0.769861798792419 0.47274488 0.27433926 prediction 0.450193656261941 Functional Gain - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7477185 chr12:7477186 nonsynonymous SNV 0.987 3 22 hm5C_associated_SNPs_117363 0 0 0 0 2 ACSM4 chr12:7477194 5'GT 7477194 Upstream 9bp
chrX 100086591 100086591 1 + C T UCEC 100086590 + 100086570 100086610 41 GAGGCTTGTTAGGAGATGCTCCGAATGATCCACGGGGAGGC GAGGCTTGTTAGGAGATGCTCTGAATGATCCACGGGGAGGC < 41bp 0.590248706508011 0.815344516987441 0.03325212 0.023043662 prediction 0.45019162095886 Functional Gain - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100086590 chrX:100086591 nonsynonymous SNV 0.942 4 22 hm5C_associated_SNPs_117364 0 0 0 0 2 CSTF2 chrX:100086504 3'AG 100086504 Downstream 88bp
chrX 100086591 100086591 1 + C T UCEC 100086590 + 100086570 100086610 41 GAGGCTTGTTAGGAGATGCTCCGAATGATCCACGGGGAGGC GAGGCTTGTTAGGAGATGCTCTGAATGATCCACGGGGAGGC < 41bp 0.590248706508011 0.815344516987441 0.03325212 0.023043662 prediction 0.45019162095886 Functional Gain - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100086590 chrX:100086591 nonsynonymous SNV 0.942 4 22 hm5C_associated_SNPs_117364 0 0 0 0 2 CSTF2 chrX:100086645 5'GT 100086645 Upstream 55bp
chr2 70164402 70164402 1 + A G SKCM 70164399 + 70164379 70164419 41 TGTGACAGAAAAGCCGTTCACCAAATCGACCAGCTTCAGCG TGTGACAGAAAAGCCGTTCACCAGATCGACCAGCTTCAGCG < 41bp 0.531602984617645 0.756698603443759 0.24608019 0.44188705 prediction 0.450191237652229 Functional Gain - MXD1 ENSG00000059728 CDS Human protein_coding chr2:70164399 chr2:70164402 synonymous SNV . 0 24 hm5C_associated_SNPs_117365 0 0 1 0 1 MXD1 chr2:70164367 3'AG 70164367 Downstream 36bp
chr2 1499897 1499897 1 + C T SKCM 1499896 + 1499876 1499916 41 GCCTTCCAAGTCGGCAAATTCCCCGAAGACTTTGAGTCTTG GCCTTCCAAGTCGGCAAATTCTCCGAAGACTTTGAGTCTTG < 41bp 0.455215258426704 0.725095434172347 0.05478263 0.23995277 prediction 0.450190868344693 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1499896 chr2:1499897 nonsynonymous SNV 0.014 3 22 hm5C_associated_SNPs_117366 0 0 0 0 1 TPO chr2:1499969 5'GT 1499969 Upstream 73bp
chr16 31045639 31045639 1 + C G LUSC 31045638 + 31045618 31045658 41 CATCCTGGCCACGCCCCTTCCCGAGGAGAGTGAGTGAAACC CATCCTGGCCACGCCCCTTCCGGAGGAGAGTGAGTGAAACC < 41bp 0.584036834397106 0.809118045058796 0.5436252 0.9032656 prediction 0.450162421323379 Functional Gain - STX4 ENSG00000103496 CDS Human protein_coding chr16:31045638 chr16:31045639 synonymous SNV . 0 22 hm5C_associated_SNPs_117370 0 0 1 0 1 STX4 chr16:31045547 3'AG 31045547 Downstream 93bp
chr1 156255359 156255359 1 + C T BLCA 156255358 + 156255338 156255378 41 TACCAAGCTAGAGGAGCTGCCCGAAGACGATGCCAACCTGC TACCAAGCTAGAGGAGCTGCCTGAAGACGATGCCAACCTGC < 41bp 0.554875212271866 0.779952913806737 0.22969157 0.29374933 prediction 0.450155403069741 Functional Gain - TMEM79 ENSG00000163472 CDS Human protein_coding chr1:156255358 chr1:156255359 synonymous SNV . 0 22 hm5C_associated_SNPs_117372 0 0 0 0 1 TMEM79 chr1:156255316 3'AG 156255316 Downstream 44bp
chr1 55279590 55279590 1 + C T UCEC 55279589 + 55279569 55279609 41 TTTCTAAACTTCCCCGAAACCCGAAAACCCCTACAGAGAGG TTTCTAAACTTCCCCGAAACCTGAAAACCCCTACAGAGAGG < 41bp 0.573427982424369 0.798501950016749 0.13963822 0.08904445 prediction 0.450147935184759 Functional Gain - LEXM ENSG00000162398 CDS Human protein_coding chr1:55279589 chr1:55279590 nonsynonymous SNV 0.009 4 22 hm5C_associated_SNPs_117373 0 0 0 0 1 LEXM chr1:55279648 5'GT 55279648 Upstream 59bp
chr11 15197347 15197347 1 + C G rs148355976 15197346 + 15197326 15197366 41 GGAAGATCTGAAGCTCATGACCGAGTGCGAGTGCATGTGTG GGAAGATCTGAAGCTCATGACGGAGTGCGAGTGCATGTGTG < 41bp 0.397233965152618 0.725066333346311 0.107375115 0.43089488 prediction 0.450132666692622 Functional Gain - INSC ENSG00000188487 CDS Human protein_coding chr11:15197346 chr11:15197347 synonymous SNV . 0 22 hm5C_associated_SNPs_117377 0 0 0 0 1 INSC chr11:15197287 3'AG 15197287 Downstream 61bp
chr17 7611341 7611341 1 + C T SKCM 7611340 + 7611320 7611360 41 ACCGGCTAGACCTGCTCTGCCCCCGGGCCCGGCCTCCTGGC ACCGGCTAGACCTGCTCTGCCTCCGGGCCCGGCCTCCTGGC < 41bp 0.610364875966103 0.835430117436339 0.14059943 0.32096082 prediction 0.45013048294047 Functional Gain - EFNB3 ENSG00000108947 CDS Human protein_coding chr17:7611340 chr17:7611341 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_117378 0 0 1 0 1 EFNB3 chr17:7611276 3'AG 7611276 Downstream 66bp
chr6 37414221 37414221 1 + C T SKCM 37414220 + 37414200 37414240 41 ACGTGGACTGGCGAGATGAGCCAGAGGTAAGTGTTAAAGTG ACGTGGACTGGCGAGATGAGCTAGAGGTAAGTGTTAAAGTG < 41bp 0.567031579728324 0.792078942751698 0.9008893 0.66771114 prediction 0.450094726046748 Functional Gain - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37414220 chr6:37414221 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_117384 0 0 1 0 1 CMTR1 chr6:37414225 5'GT 37414225 Upstream 5bp
chr6 52051237 52051237 1 + C A UCEC 52051236 + 52051216 52051256 41 TGGAAGAAACAACGATGACTCCTGGGAAGACCTCATTGGTG TGGAAGAAACAACGATGACTCATGGGAAGACCTCATTGGTG < 41bp 0.473124898311086 0.725042926082092 0.31845462 0.47135445 prediction 0.450085852164184 Functional Gain - IL17A ENSG00000112115 CDS Human protein_coding chr6:52051236 chr6:52051237 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_117387 0 0 0 0 1 IL17A chr6:52051256 5'GT 52051256 Upstream 20bp
chr9 33351713 33351713 1 + A G UCEC 33351710 + 33351690 33351730 41 AAGCAGCCCTGCACCACCCCCAGAGCTGACTGTGGTCACCC AAGCAGCCCTGCACCACCCCCAGGGCTGACTGTGGTCACCC < 41bp 0.566911558001365 0.791952901079681 0.885428 0.93023527 prediction 0.450082686156633 Functional Gain - NFX1 ENSG00000086102 CDS Human protein_coding chr9:33351710 chr9:33351713 synonymous SNV . 0 24 hm5C_associated_SNPs_117389 0 0 1 0 1 NFX1 chr9:33351788 5'GT 33351788 Upstream 76bp
chr17 9763349 9763349 1 + C T LUSC 9763348 + 9763328 9763368 41 CTGGTTGAAGGCCTCTACCTCCACACGCTGCTGGAGCCCAC CTGGTTGAAGGCCTCTACCTCTACACGCTGCTGGAGCCCAC < 41bp 0.601138275128766 0.826179036693527 0.8405622 0.46819893 prediction 0.450081523129522 Functional Gain - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9763348 chr17:9763349 nonsynonymous SNV 0.104 0 22 hm5C_associated_SNPs_117390 0 0 0 0 2 GLP2R chr17:9763259 3'AG 9763259 Downstream 91bp
chr17 9763349 9763349 1 + C T LUSC 9763348 + 9763328 9763368 41 CTGGTTGAAGGCCTCTACCTCCACACGCTGCTGGAGCCCAC CTGGTTGAAGGCCTCTACCTCTACACGCTGCTGGAGCCCAC < 41bp 0.601138275128766 0.826179036693527 0.8405622 0.46819893 prediction 0.450081523129522 Functional Gain - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9763348 chr17:9763349 nonsynonymous SNV 0.104 0 22 hm5C_associated_SNPs_117390 0 0 0 0 2 GLP2R chr17:9763418 5'GT 9763418 Upstream 70bp
chr11 107506460 107506460 1 + A G COAD 107506457 + 107506437 107506477 41 GCGTAGAGAGGCCTATGATTCTGATAATCCCCAACATGAAG GCGTAGAGAGGCCTATGATTCTGGTAATCCCCAACATGAAG < 41bp 0.488199216859583 0.725040176202605 0.21507442 0.17548949 prediction 0.45008035240521 Functional Gain - ELMOD1 ENSG00000110675 CDS Human protein_coding chr11:107506457 chr11:107506460 nonsynonymous SNV 0.988 2 24 hm5C_associated_SNPs_117391 0 0 0 0 2 ELMOD1 chr11:107506362 3'AG 107506362 Downstream 99bp
chr11 107506460 107506460 1 + A G COAD 107506457 + 107506437 107506477 41 GCGTAGAGAGGCCTATGATTCTGATAATCCCCAACATGAAG GCGTAGAGAGGCCTATGATTCTGGTAATCCCCAACATGAAG < 41bp 0.488199216859583 0.725040176202605 0.21507442 0.17548949 prediction 0.45008035240521 Functional Gain - ELMOD1 ENSG00000110675 CDS Human protein_coding chr11:107506457 chr11:107506460 nonsynonymous SNV 0.988 2 24 hm5C_associated_SNPs_117391 0 0 0 0 2 ELMOD1 chr11:107506491 5'GT 107506491 Upstream 32bp
chr20 9495524 9495524 1 + C T SKCM 9495523 + 9495503 9495543 41 GATCTCCAAGGAAGAGGGGTCCCCAGCATCGACAGACTTCG GATCTCCAAGGAAGAGGGGTCTCCAGCATCGACAGACTTCG < 41bp 0.549786354916514 0.774826158941732 0.0136552155 0.8837879 prediction 0.450079608050436 Functional Gain - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9495523 chr20:9495524 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_117392 0 0 0 0 1 LAMP5 chr20:9495563 5'GT 9495563 Upstream 40bp
chr7 101183210 101183210 1 + C T LUAD 101183209 + 101183189 101183229 41 GCAGCAGAACGGCCCTCCAGCCCGGACAACGACCTGCCAGC GCAGCAGAACGGCCCTCCAGCTCGGACAACGACCTGCCAGC < 41bp 0.520880109278865 0.745914450683721 0.54946613 0.6550052 prediction 0.450068682809713 Functional Gain - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101183209 chr7:101183210 nonsynonymous SNV 0.115 1 22 hm5C_associated_SNPs_117393 0 0 0 0 1 COL26A1 chr7:101183174 3'AG 101183174 Downstream 37bp
chr8 26501001 26501001 1 + C A rs138088405 26500997 + 26500977 26501017 41 CATCACTGCCAGCTTGGGAACGGACGGCTCCCATTACTGGA CATCACTGCCAGCTTGGGAACGGAAGGCTCCCATTACTGGA < 41bp 0.306140953496895 0.725034202641429 0.37046802 0.7524164 prediction 0.450068405282858 Functional Gain - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26500997 chr8:26501001 nonsynonymous SNV 0.487 3 25 hm5C_associated_SNPs_117394 0 0 1 0 1 DPYSL2 chr8:26500955 3'AG 26500955 Downstream 47bp
chr5 118835030 118835030 1 + A G BRCA 118835027 + 118835007 118835047 41 CTTAGGCTGGAGCTATTGGCCAGAAACTCCCTCCATTTTCT CTTAGGCTGGAGCTATTGGCCAGGAACTCCCTCCATTTTCT < 41bp 0.515494398962799 0.74052836643392 0.023033798 0.034508467 prediction 0.450067934942241 Functional Gain - HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118835027 chr5:118835030 nonsynonymous SNV 0.956 0 24 hm5C_associated_SNPs_117395 0 0 1 0 1 HSD17B4 chr5:118835012 3'AG 118835012 Downstream 19bp
chr2 48030619 48030619 1 + T C UCEC 48030616 + 48030596 48030636 41 TGATGGTCCTATGTGTCGCCCAGTAATTCTGTTGCCGGAAG TGATGGTCCTATGTGTCGCCCAGCAATTCTGTTGCCGGAAG < 41bp 0.499496670981949 0.725031882086513 0.52795935 0.5119731 prediction 0.450063764173027 Functional Gain - MSH6 ENSG00000116062 CDS Human protein_coding chr2:48030616 chr2:48030619 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_117396 3 0 1 0 1 MSH6 chr2:48030559 3'AG 48030559 Downstream 61bp
chr6 152332874 152332874 1 + C A LUAD 152332870 + 152332850 152332890 41 ATCCTGATGATTGGTCTCGTCTGGCGCTCCATGGAGCACCC ATCCTGATGATTGGTCTCGTCTGGAGCTCCATGGAGCACCC < 41bp 0.680873561292781 0.905895396006235 0.36141974 0.46935317 prediction 0.450043669426909 Functional Gain - ESR1 ENSG00000091831 CDS Human protein_coding chr6:152332870 chr6:152332874 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_117399 0 0 0 0 2 ESR1 chr6:152332791 3'AG 152332791 Downstream 84bp
chr6 152332874 152332874 1 + C A LUAD 152332870 + 152332850 152332890 41 ATCCTGATGATTGGTCTCGTCTGGCGCTCCATGGAGCACCC ATCCTGATGATTGGTCTCGTCTGGAGCTCCATGGAGCACCC < 41bp 0.680873561292781 0.905895396006235 0.36141974 0.46935317 prediction 0.450043669426909 Functional Gain - ESR1 ENSG00000091831 CDS Human protein_coding chr6:152332870 chr6:152332874 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_117399 0 0 0 0 2 ESR1 chr6:152332929 5'GT 152332929 Upstream 56bp
chr22 21141204 21141204 1 + C A LAML 21141203 + 21141183 21141223 41 CACAGTGAACGAGGAAGGCACCCAAGCCACCACTGTGACCA CACAGTGAACGAGGAAGGCACACAAGCCACCACTGTGACCA < 41bp 0.586422208883654 0.811441951553144 0.16578671 0.04599324 prediction 0.450039485338979 Functional Gain - SERPIND1 ENSG00000099937 CDS Human protein_coding chr22:21141203 chr22:21141204 synonymous SNV . 0 22 hm5C_associated_SNPs_117400 0 0 1 0 1 SERPIND1 chr22:21141163 3'AG 21141163 Downstream 42bp
chr12 20859006 20859006 1 + T C BLCA 20859004 + 20858984 20859024 41 CTCATTGCAATGCCTCAGTTCTTCATGGAGCAGTAAGTCTA CTCATTGCAATGCCTCAGTTCTCCATGGAGCAGTAAGTCTA < 41bp 0.419343245762984 0.725018137828359 0.0837079 0.9529966 prediction 0.450036275656719 Functional Gain - SLCO1C1 ENSG00000139155 CDS Human protein_coding chr12:20859004 chr12:20859006 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_117401 0 0 0 0 1 SLCO1C1 chr12:20859015 5'GT 20859015 Upstream 10bp
chr19 11094862 11094862 1 + C T LUSC 11094861 + 11094841 11094881 41 ACCCACCCCTGGGCGGAACTCCTCGGCCAGGTCCTTCCCCG ACCCACCCCTGGGCGGAACTCTTCGGCCAGGTCCTTCCCCG < 41bp 0.484039744760001 0.725016083043327 0.40590352 0.33668327 prediction 0.450032166086655 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11094861 chr19:11094862 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_117402 0 0 1 0 1 SMARCA4 chr19:11094797 3'AG 11094797 Downstream 66bp
chr3 105243209 105243209 1 + C T rs141090189 105243208 + 105243188 105243228 41 GTGTGCAGTACGACGATGTACCAGAATACAAAGACAGATTG GTGTGCAGTACGACGATGTACTAGAATACAAAGACAGATTG < 41bp 0.474276162033702 0.725013577425071 0.016150594 0.033060044 prediction 0.450027154850142 Functional Gain - ALCAM ENSG00000170017 CDS Human protein_coding chr3:105243208 chr3:105243209 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_117403 0 0 1 0 1 ALCAM chr3:105243133 3'AG 105243133 Downstream 77bp
chr5 1217031 1217031 1 + A G SARC 1217028 + 1217008 1217048 41 CCTACGCGCAGCTGGTGTTCCAGACCTGCGACATCAACGCC CCTACGCGCAGCTGGTGTTCCAGGCCTGCGACATCAACGCC < 41bp 0.470249193762844 0.725006551686449 0.4141894 0.49372974 prediction 0.450013103372898 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1217028 chr5:1217031 nonsynonymous SNV 0.937 0 24 hm5C_associated_SNPs_117406 0 0 0 0 1 SLC6A19 chr5:1217060 5'GT 1217060 Upstream 30bp
chr1 52811808 52811808 1 + C T STAD 52811807 + 52811787 52811827 41 ATCTGGACAGCGCCTTGGTGCCGGTGATCCATGGAGGGGCC ATCTGGACAGCGCCTTGGTGCTGGTGATCCATGGAGGGGCC < 41bp 0.493187918788942 0.725001929718747 0.23217899 0.18351585 prediction 0.450003859437494 Functional Gain - ZFYVE9 ENSG00000157077 CDS Human protein_coding chr1:52811807 chr1:52811808 nonsynonymous SNV 0.974 4 22 hm5C_associated_SNPs_117409 0 0 1 0 1 ZFYVE9 chr1:52811732 3'AG 52811732 Downstream 77bp
chr19 55333102 55333102 1 + C T SKCM 55333101 + 55333081 55333121 41 CGTGACCTTGTCCTGTAGCTCCCGGAGCTCCTATGACATGT CGTGACCTTGTCCTGTAGCTCTCGGAGCTCCTATGACATGT < 41bp 0.556728621240234 0.781722767170965 0.20138353 0.21858078 prediction 0.449988291861462 Functional Gain - KIR3DL1 ENSG00000167633 CDS Human protein_coding chr19:55333101 chr19:55333102 synonymous SNV . 0 22 hm5C_associated_SNPs_117415 0 0 0 0 1 KIR3DL1 chr19:55333020 3'AG 55333020 Downstream 83bp
chr17 35298137 35298137 1 + C T COAD 35298136 + 35298116 35298156 41 CCCAAGCCCACCCGCCACATCCGCGAGCAGCTGGCGCAGGA CCCAAGCCCACCCGCCACATCTGCGAGCAGCTGGCGCAGGA < 41bp 0.592991477311018 0.817960131199849 0.28260165 0.20205021 prediction 0.449937307777662 Functional Gain - LHX1 ENSG00000132130 CDS Human other chr17:35298136 chr17:35298137 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_117422 0 0 0 0 1 LHX1 chr17:35298184 5'GT 35298184 Upstream 48bp
chr3 52457203 52457203 1 + C T UCEC 52457202 + 52457182 52457222 41 ACAACACCTTGGAAGAGAATCCGGGCCTTTCTTGGACTGAT ACAACACCTTGGAAGAGAATCTGGGCCTTTCTTGGACTGAT < 41bp 0.50266670695624 0.727631218345709 0.75299597 0.7938914 prediction 0.449929022778938 Functional Gain - PHF7 ENSG00000010318 CDS Human protein_coding chr3:52457202 chr3:52457203 nonsynonymous SNV 0.942 1 22 hm5C_associated_SNPs_117424 0 0 0 0 1 PHF7 chr3:52457107 3'AG 52457107 Downstream 97bp
chr1 158325668 158325668 1 + T A LUAD 158325664 + 158325644 158325684 41 GCCCCAGTCCTGGCCCTGGCCGTCTGCAGCTTGTGTGCCAT GCCCCAGTCCTGGCCCTGGCCGTCAGCAGCTTGTGTGCCAT < 41bp 0.61872276400804 0.843687144717714 0.33605567 0.25979212 prediction 0.449928761419348 Functional Gain - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325664 chr1:158325668 nonsynonymous SNV 0.763 3 25 hm5C_associated_SNPs_117425 0 0 0 1 1 CD1E chr1:158325730 5'GT 158325730 Upstream 63bp
chr2 238668824 238668824 1 + A G UCEC 238668821 + 238668801 238668841 41 CAAAAGAAGAGTTAAATGCCCTCAAGTCGACAGGGGATGGG CAAAAGAAGAGTTAAATGCCCTCGAGTCGACAGGGGATGGG < 41bp 0.531609188593696 0.756565169010703 0.2106899 0.62591064 prediction 0.449911960834013 Functional Gain - LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238668821 chr2:238668824 nonsynonymous SNV 0.873 2 24 hm5C_associated_SNPs_117429 0 0 1 0 1 LRRFIP1 chr2:238668848 5'GT 238668848 Upstream 25bp
chr7 64152334 64152334 1 + C T SKCM 64152333 + 64152313 64152353 41 ACATGAGATGGTAGCCAAACCCCCAGGTAGGTGAGAGTGAA ACATGAGATGGTAGCCAAACCTCCAGGTAGGTGAGAGTGAA < 41bp 0.559337064063552 0.784287944077519 0.02727148 0.9225954 prediction 0.449901760027935 Functional Gain - ZNF107 ENSG00000196247 CDS Human protein_coding chr7:64152333 chr7:64152334 synonymous SNV . 0 22 hm5C_associated_SNPs_117433 0 0 0 0 2 ZNF107 chr7:64152243 3'AG 64152243 Downstream 92bp
chr7 64152334 64152334 1 + C T SKCM 64152333 + 64152313 64152353 41 ACATGAGATGGTAGCCAAACCCCCAGGTAGGTGAGAGTGAA ACATGAGATGGTAGCCAAACCTCCAGGTAGGTGAGAGTGAA < 41bp 0.559337064063552 0.784287944077519 0.02727148 0.9225954 prediction 0.449901760027935 Functional Gain - ZNF107 ENSG00000196247 CDS Human protein_coding chr7:64152333 chr7:64152334 synonymous SNV . 0 22 hm5C_associated_SNPs_117433 0 0 0 0 2 ZNF107 chr7:64152338 5'GT 64152338 Upstream 5bp
chr1 32793179 32793179 1 + T C rs555113155 32793177 + 32793157 32793197 41 ACATTGACATTGATATTCACCATGGTGACGGCGTGGAAGAG ACATTGACATTGATATTCACCACGGTGACGGCGTGGAAGAG < 41bp 0.467073927834986 0.724943977200627 0.059592247 0.15877578 prediction 0.449887954401253 Functional Gain - HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32793177 chr1:32793179 synonymous SNV . 0 23 hm5C_associated_SNPs_117434 0 0 1 0 2 HDAC1 chr1:32793137 3'AG 32793137 Downstream 43bp
chr1 32793179 32793179 1 + T C rs555113155 32793177 + 32793157 32793197 41 ACATTGACATTGATATTCACCATGGTGACGGCGTGGAAGAG ACATTGACATTGATATTCACCACGGTGACGGCGTGGAAGAG < 41bp 0.467073927834986 0.724943977200627 0.059592247 0.15877578 prediction 0.449887954401253 Functional Gain - HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32793177 chr1:32793179 synonymous SNV . 0 23 hm5C_associated_SNPs_117434 0 0 1 0 2 HDAC1 chr1:32793278 5'GT 32793278 Upstream 100bp
chr19 56171941 56171941 1 + C T BRCA 56171940 + 56171920 56171960 41 AATACTGGGACGTGCCACCCCCAGGCTTTGAGCACATCACC AATACTGGGACGTGCCACCCCTAGGCTTTGAGCACATCACC < 41bp 0.475196422707656 0.724941350807666 0.08553141 0.036360174 prediction 0.449882701615332 Functional Gain - U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56171940 chr19:56171941 nonsynonymous SNV 0.082 1 22 hm5C_associated_SNPs_117435 0 0 1 0 2 U2AF2 chr19:56171882 3'AG 56171882 Downstream 60bp
chr19 56171941 56171941 1 + C T BRCA 56171940 + 56171920 56171960 41 AATACTGGGACGTGCCACCCCCAGGCTTTGAGCACATCACC AATACTGGGACGTGCCACCCCTAGGCTTTGAGCACATCACC < 41bp 0.475196422707656 0.724941350807666 0.08553141 0.036360174 prediction 0.449882701615332 Functional Gain - U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56171940 chr19:56171941 nonsynonymous SNV 0.082 1 22 hm5C_associated_SNPs_117435 0 0 1 0 2 U2AF2 chr19:56171985 5'GT 56171985 Upstream 45bp
chr7 47857722 47857722 1 + A G UCEC 47857719 + 47857699 47857739 41 TGGAGGCCTGCCAGAGCACCCAGAGGGTGGAATGAAGCAAC TGGAGGCCTGCCAGAGCACCCAGGGGGTGGAATGAAGCAAC < 41bp 0.535105144360199 0.760036482223157 0.77410865 0.9019009 prediction 0.449862675725915 Functional Gain - C7orf69 ENSG00000136275 CDS Human antisense chr7:47857719 chr7:47857722 synonymous SNV . 0 24 hm5C_associated_SNPs_117438 0 0 0 0 2 C7orf69 chr7:47857624 3'AG 47857624 Downstream 99bp
chr7 47857722 47857722 1 + A G UCEC 47857719 + 47857699 47857739 41 TGGAGGCCTGCCAGAGCACCCAGAGGGTGGAATGAAGCAAC TGGAGGCCTGCCAGAGCACCCAGGGGGTGGAATGAAGCAAC < 41bp 0.535105144360199 0.760036482223157 0.77410865 0.9019009 prediction 0.449862675725915 Functional Gain - C7orf69 ENSG00000136275 CDS Human antisense chr7:47857719 chr7:47857722 synonymous SNV . 0 24 hm5C_associated_SNPs_117438 0 0 0 0 2 C7orf69 chr7:47857793 5'GT 47857793 Upstream 72bp
chr17 4496372 4496372 1 + A G COAD 4496369 + 4496349 4496389 41 GACAGGTTCTCTGGGGAGACCTCAGCTGCGGCTCTATCACC GACAGGTTCTCTGGGGAGACCTCGGCTGCGGCTCTATCACC < 41bp 0.586584632027038 0.811513608236666 0.35168147 0.52588546 prediction 0.449857952419255 Functional Gain - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4496369 chr17:4496372 synonymous SNV . 0 24 hm5C_associated_SNPs_117439 0 0 0 0 1 SMTNL2 chr17:4496466 5'GT 4496466 Upstream 95bp
chr2 130894320 130894320 1 + A G rs189792487 130894317 + 130894297 130894337 41 GGCTTTGCCGCAAGCCTCACCAGAACCTCCCTGGGTGTGAA GGCTTTGCCGCAAGCCTCACCAGGACCTCCCTGGGTGTGAA < 41bp 0.515210994056908 0.740137254583971 0.33512866 0.8233193 prediction 0.449852521054127 Functional Gain - MED15P9 ENSG00000223760 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:130894317 chr2:130894320 . . 0 24 hm5C_associated_SNPs_117440 0 0 0 0 2 MED15P9 chr2:130894265 3'AG 130894265 Downstream 56bp
chr2 130894320 130894320 1 + A G rs189792487 130894317 + 130894297 130894337 41 GGCTTTGCCGCAAGCCTCACCAGAACCTCCCTGGGTGTGAA GGCTTTGCCGCAAGCCTCACCAGGACCTCCCTGGGTGTGAA < 41bp 0.515210994056908 0.740137254583971 0.33512866 0.8233193 prediction 0.449852521054127 Functional Gain - MED15P9 ENSG00000223760 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:130894317 chr2:130894320 . . 0 24 hm5C_associated_SNPs_117440 0 0 0 0 2 MED15P9 chr2:130894397 5'GT 130894397 Upstream 78bp
chr5 131607089 131607089 1 + C A LUAD 131607088 + 131607068 131607108 41 GCTGCGGGAGCCAGCCGAGCCCGTGGCCGCGGAGCCCAAGC GCTGCGGGAGCCAGCCGAGCCAGTGGCCGCGGAGCCCAAGC < 41bp 0.465276724385604 0.724925493151795 0.84606487 0.8257239 prediction 0.44985098630359 Functional Gain - PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131607088 chr5:131607089 synonymous SNV . 0 22 hm5C_associated_SNPs_117441 0 0 1 0 2 PDLIM4 chr5:131606996 3'AG 131606996 Downstream 94bp
chr5 131607089 131607089 1 + C A LUAD 131607088 + 131607068 131607108 41 GCTGCGGGAGCCAGCCGAGCCCGTGGCCGCGGAGCCCAAGC GCTGCGGGAGCCAGCCGAGCCAGTGGCCGCGGAGCCCAAGC < 41bp 0.465276724385604 0.724925493151795 0.84606487 0.8257239 prediction 0.44985098630359 Functional Gain - PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131607088 chr5:131607089 synonymous SNV . 0 22 hm5C_associated_SNPs_117441 0 0 1 0 2 PDLIM4 chr5:131607159 5'GT 131607159 Upstream 71bp
chr2 241528883 241528883 1 + C A LUAD 241528882 + 241528862 241528902 41 CTGCAGAAGAGCAGGCACCTCCTGGACCAGGTGCGGGGCCC CTGCAGAAGAGCAGGCACCTCATGGACCAGGTGCGGGGCCC < 41bp 0.469981269870615 0.724924606141855 0.3124012 0.3746177 prediction 0.44984921228371 Functional Gain - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241528882 chr2:241528883 nonsynonymous SNV 0.995 5 22 hm5C_associated_SNPs_117443 0 0 1 0 1 CAPN10 chr2:241528891 5'GT 241528891 Upstream 9bp
chr1 9031007 9031007 1 + C T PRAD 9031006 + 9030986 9031026 41 CGCAGGACCCAGCCCCTGAACCACAGAGTGGTGGAATCCAA CGCAGGACCCAGCCCCTGAACTACAGAGTGGTGGAATCCAA < 41bp 0.606899260298656 0.831821380324605 0.06989604 0.306153 prediction 0.449844240051899 Functional Gain - CA6 ENSG00000131686 CDS Human protein_coding chr1:9031006 chr1:9031007 nonsynonymous SNV 0.006 0 22 hm5C_associated_SNPs_117444 0 0 0 0 1 CA6 chr1:9030926 3'AG 9030926 Downstream 82bp
chr5 176795797 176795797 1 + A G UCEC 176795794 + 176795774 176795814 41 GTACTGCTGTGTGTACCTGCCCGATGGCACAGCCTCCTTGG GTACTGCTGTGTGTACCTGCCCGGTGGCACAGCCTCCTTGG < 41bp 0.474423497135175 0.724914667148926 0.13957411 0.6453476 prediction 0.449829334297852 Functional Gain - RGS14 ENSG00000169220 CDS Human protein_coding chr5:176795794 chr5:176795797 nonsynonymous SNV 0.097 4 24 hm5C_associated_SNPs_117447 0 0 0 0 1 RGS14 chr5:176795718 3'AG 176795718 Downstream 80bp
chr14 74009789 74009789 1 + C G STAD 74009788 + 74009768 74009808 41 AGTTGGGCTGCTTGGAATTTCCAAAGGGGGTGAGCTCTGCC AGTTGGGCTGCTTGGAATTTCGAAAGGGGGTGAGCTCTGCC < 41bp 0.401899729830427 0.724914114934538 0.57492375 0.5331087 prediction 0.449828229869077 Functional Gain - ACOT1 ENSG00000184227 CDS Human protein_coding chr14:74009788 chr14:74009789 synonymous SNV . 0 22 hm5C_associated_SNPs_117448 0 0 0 0 1 ACOT1 chr14:74009754 3'AG 74009754 Downstream 36bp
chr5 150050091 150050091 1 + T G COAD 150050089 + 150050069 150050109 41 AAGCTGAGCGTGCCCCAGGACCTGATGATGGAGGAGCTGTC AAGCTGAGCGTGCCCCAGGACCGGATGATGGAGGAGCTGTC < 41bp 0.358553027695241 0.724911965880981 0.548678 0.8940419 prediction 0.449823931761961 Functional Gain - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150050089 chr5:150050091 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_117449 0 0 0 0 1 MYOZ3 chr5:150050046 3'AG 150050046 Downstream 46bp
chr6 43096755 43096755 1 + C T HNSC 43096754 + 43096734 43096774 41 CTTCATCAAGCAGCCGTCCTCCCAGGATGCACTGCAGGGGC CTTCATCAAGCAGCCGTCCTCTCAGGATGCACTGCAGGGGC < 41bp 0.59009084774668 0.814989743953412 0.23045942 0.05078736 prediction 0.449797792413464 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43096754 chr6:43096755 synonymous SNV . 0 22 hm5C_associated_SNPs_117451 0 0 1 0 1 PTK7 chr6:43096715 3'AG 43096715 Downstream 41bp
chr11 43861571 43861571 1 + A G UCEC 43861568 + 43861548 43861588 41 GACTTTTGTAGATTTCTTCTCTCAGTGCCTCCATGAGGAGT GACTTTTGTAGATTTCTTCTCTCGGTGCCTCCATGAGGAGT < 41bp 0.550381942923155 0.775276594085574 0.008061826 0.036330223 prediction 0.449789302324838 Functional Gain - HSD17B12 ENSG00000149084 CDS Human protein_coding chr11:43861568 chr11:43861571 nonsynonymous SNV 0.885 1 24 hm5C_associated_SNPs_117453 0 0 1 0 2 HSD17B12 chr11:43861549 3'AG 43861549 Downstream 23bp
chr11 43861571 43861571 1 + A G UCEC 43861568 + 43861548 43861588 41 GACTTTTGTAGATTTCTTCTCTCAGTGCCTCCATGAGGAGT GACTTTTGTAGATTTCTTCTCTCGGTGCCTCCATGAGGAGT < 41bp 0.550381942923155 0.775276594085574 0.008061826 0.036330223 prediction 0.449789302324838 Functional Gain - HSD17B12 ENSG00000149084 CDS Human protein_coding chr11:43861568 chr11:43861571 nonsynonymous SNV 0.885 1 24 hm5C_associated_SNPs_117453 0 0 1 0 2 HSD17B12 chr11:43861614 5'GT 43861614 Upstream 44bp
chr7 120971816 120971816 1 + T C rs116350731 120971814 + 120971794 120971834 41 AGGTCATGCAGTGCAGGCAACATGACAGAGTGTTCCTGTGA AGGTCATGCAGTGCAGGCAACACGACAGAGTGTTCCTGTGA < 41bp 0.626544903596614 0.851437027792962 0.17115206 0.19446793 prediction 0.449784248392697 Functional Gain - WNT16 ENSG00000002745 CDS Human protein_coding chr7:120971814 chr7:120971816 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_117454 0 0 0 0 1 WNT16 chr7:120971732 3'AG 120971732 Downstream 85bp
chr19 7987008 7987008 1 + T C STAD 7987006 + 7986986 7987026 41 GCCCGTGGAAAGCCTTTGCTCCTGAGCGCCCCTGGAGGACA GCCCGTGGAAAGCCTTTGCTCCCGAGCGCCCCTGGAGGACA < 41bp 0.597019489865794 0.821909966202024 0.04401505 0.0520249 prediction 0.449780952672461 Functional Gain - SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7987006 chr19:7987008 nonsynonymous SNV 0.002 3 23 hm5C_associated_SNPs_117455 0 0 1 0 1 SNAPC2 chr19:7986920 3'AG 7986920 Downstream 89bp
chr1 21887136 21887136 1 + A G STAD 21887133 + 21887113 21887153 41 GTTTAGAGAAAGAGAAAGACCCCAAGTACTGGCGAGACCAA GTTTAGAGAAAGAGAAAGACCCCGAGTACTGGCGAGACCAA < 41bp 0.540607877551104 0.765491841531612 0.29831868 0.35937828 prediction 0.449767927961017 Functional Gain - ALPL ENSG00000162551 CDS Human protein_coding chr1:21887133 chr1:21887136 nonsynonymous SNV 0.804 1 24 hm5C_associated_SNPs_117457 0 0 1 0 1 ALPL chr1:21887119 3'AG 21887119 Downstream 18bp
chr4 1806134 1806134 1 + C A UCEC 1806133 + 1806113 1806153 41 AGCTACGGGGTGGGCTTCTTCCTGTTCATCCTGGTGGTGGC AGCTACGGGGTGGGCTTCTTCATGTTCATCCTGGTGGTGGC < 41bp 0.47320722507073 0.724874960552171 0.096571594 0.43933955 prediction 0.449749921104343 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1806133 chr4:1806134 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_117464 0 0 1 0 1 FGFR3 chr4:1806057 3'AG 1806057 Downstream 78bp
chr20 43108645 43108645 1 + C A LIHC 43108644 + 43108624 43108664 41 GGGACCTTGGTAGCTAATGTCCGAAGAAAGTGACTCTCTGA GGGACCTTGGTAGCTAATGTCAGAAGAAAGTGACTCTCTGA < 41bp 0.602546116493864 0.827419995140262 0.31123227 0.85467505 prediction 0.449747757292795 Functional Gain - TTPAL ENSG00000124120 CDS Human protein_coding chr20:43108644 chr20:43108645 synonymous SNV . 0 22 hm5C_associated_SNPs_117467 0 0 1 0 1 TTPAL chr20:43108625 3'AG 43108625 Downstream 21bp
chr10 103190141 103190141 1 + C G LUSC 103190140 + 103190120 103190160 41 CTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTC CTGTGGCTGGGCTGCTCCAGCGTGGCGGACAGCATGCCTTC < 41bp 0.399233915909131 0.724868345018894 0.89758074 0.92859745 prediction 0.449736690037788 Functional Gain - BTRC ENSG00000166167 CDS Human protein_coding chr10:103190140 chr10:103190141 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_117470 0 0 0 0 2 BTRC chr10:103190102 3'AG 103190102 Downstream 40bp
chr10 103190141 103190141 1 + C G LUSC 103190140 + 103190120 103190160 41 CTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTC CTGTGGCTGGGCTGCTCCAGCGTGGCGGACAGCATGCCTTC < 41bp 0.399233915909131 0.724868345018894 0.89758074 0.92859745 prediction 0.449736690037788 Functional Gain - BTRC ENSG00000166167 CDS Human protein_coding chr10:103190140 chr10:103190141 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_117470 0 0 0 0 2 BTRC chr10:103190209 5'GT 103190209 Upstream 69bp
chrX 138630629 138630629 1 + C T UCS 138630628 + 138630608 138630648 41 GGATATCGACTTGCAGAAAACCAGAAGTCCTGTGAACCAGC GGATATCGACTTGCAGAAAACTAGAAGTCCTGTGAACCAGC < 41bp 0.571884782593898 0.796751960719637 0.8666364 0.69382083 prediction 0.44973435625148 Functional Gain - F9 ENSG00000101981 CDS Human protein_coding chrX:138630628 chrX:138630629 stopgain 0.988 0 22 hm5C_associated_SNPs_117473 0 0 0 0 1 F9 chrX:138630650 5'GT 138630650 Upstream 22bp
chr3 38104270 38104270 1 + C T SKCM 38104269 + 38104249 38104289 41 CCAGCACCGATAGGAGAATTCCAGAGTACAGAGCCAGAACA CCAGCACCGATAGGAGAATTCTAGAGTACAGAGCCAGAACA < 41bp 0.48447301450821 0.724861881652096 0.34044933 0.2265313 prediction 0.449723763304193 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38104269 chr3:38104270 stopgain 0.049 0 22 hm5C_associated_SNPs_117476 0 0 0 1 1 DLEC1 chr3:38104292 5'GT 38104292 Upstream 23bp
chr17 56329698 56329698 1 + C T ESCA 56329697 + 56329677 56329717 41 TGCCAGCTTTGTGTACAGCTCCGAGCCAAGCCTGGCCAGCC TGCCAGCTTTGTGTACAGCTCTGAGCCAAGCCTGGCCAGCC < 41bp 0.480662084248378 0.724856346018638 0.49887437 0.28949714 prediction 0.449712692037277 Functional Gain - LPO ENSG00000167419 CDS Human protein_coding chr17:56329697 chr17:56329698 synonymous SNV . 0 22 hm5C_associated_SNPs_117477 0 0 0 0 1 LPO chr17:56329651 3'AG 56329651 Downstream 48bp
chr17 73781000 73781000 1 + C T DLBC 73780999 + 73780979 73781019 41 GCCCGGCGGCTCCGCAGCTTCCTCGGCGCCCCCGGCCGCTA GCCCGGCGGCTCCGCAGCTTCTTCGGCGCCCCCGGCCGCTA < 41bp 0.529056045967919 0.753904110669121 0.18630147 0.3728687 prediction 0.449696129402403 Functional Gain - UNK ENSG00000132478 CDS Human protein_coding chr17:73780999 chr17:73781000 synonymous SNV . 0 22 hm5C_associated_SNPs_117480 0 0 1 0 1 UNK chr17:73781065 5'GT 73781065 Upstream 66bp
chr6 43267187 43267187 1 + C T PRAD 43267186 + 43267166 43267206 41 TGCGTCCACTTTCTTCTTCGCCGGTGTGCTGGTGGGGGCTG TGCGTCCACTTTCTTCTTCGCTGGTGTGCTGGTGGGGGCTG < 41bp 0.536427823690588 0.761272418579968 0.32196152 0.24510565 prediction 0.44968918977876 Functional Gain - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43267186 chr6:43267187 synonymous SNV . 0 22 hm5C_associated_SNPs_117481 0 0 1 0 2 SLC22A7 chr6:43267128 3'AG 43267128 Downstream 60bp
chr6 43267187 43267187 1 + C T PRAD 43267186 + 43267166 43267206 41 TGCGTCCACTTTCTTCTTCGCCGGTGTGCTGGTGGGGGCTG TGCGTCCACTTTCTTCTTCGCTGGTGTGCTGGTGGGGGCTG < 41bp 0.536427823690588 0.761272418579968 0.32196152 0.24510565 prediction 0.44968918977876 Functional Gain - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43267186 chr6:43267187 synonymous SNV . 0 22 hm5C_associated_SNPs_117481 0 0 1 0 2 SLC22A7 chr6:43267231 5'GT 43267231 Upstream 45bp
chr1 158813837 158813837 1 + C G LUAD 158813833 + 158813813 158813853 41 GCCCCCAGGTCCCTCAGGAGCCAGCACATCTGCAGCTGTGG GCCCCCAGGTCCCTCAGGAGCCAGGACATCTGCAGCTGTGG < 41bp 0.427832813551915 0.72484075730244 0.39527547 0.73856086 prediction 0.44968151460488 Functional Gain - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813833 chr1:158813837 nonsynonymous SNV 0.003 2 25 hm5C_associated_SNPs_117484 0 0 0 0 2 MNDA chr1:158813745 3'AG 158813745 Downstream 93bp
chr1 158813837 158813837 1 + C G LUAD 158813833 + 158813813 158813853 41 GCCCCCAGGTCCCTCAGGAGCCAGCACATCTGCAGCTGTGG GCCCCCAGGTCCCTCAGGAGCCAGGACATCTGCAGCTGTGG < 41bp 0.427832813551915 0.72484075730244 0.39527547 0.73856086 prediction 0.44968151460488 Functional Gain - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813833 chr1:158813837 nonsynonymous SNV 0.003 2 25 hm5C_associated_SNPs_117484 0 0 0 0 2 MNDA chr1:158813912 5'GT 158813912 Upstream 76bp
chr19 15769192 15769192 1 + C A HNSC 15769191 + 15769171 15769211 41 GACATTGTGCTCCCAGACGGCCGGGTCATCCCCAAAGGTGC GACATTGTGCTCCCAGACGGCAGGGTCATCCCCAAAGGTGC < 41bp 0.598778170776634 0.823616053462567 0.49130312 0.56125665 prediction 0.449675765371866 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15769191 chr19:15769192 synonymous SNV . 0 22 hm5C_associated_SNPs_117485 0 0 0 0 1 CYP4F3 chr19:15769207 5'GT 15769207 Upstream 16bp
chr12 58166845 58166845 1 + C T COAD 58166844 + 58166824 58166864 41 GAGAGTCAAAATGTGGATTTCCGAGGCAAGAAGGTGATCGA GAGAGTCAAAATGTGGATTTCTGAGGCAAGAAGGTGATCGA < 41bp 0.561996564018658 0.786827604852886 0.9124967 0.84267557 prediction 0.449662081668456 Functional Gain - EEF1AKMT3 ENSG00000123427;ENSG00000257921 CDS Human protein_coding chr12:58166844 chr12:58166845 stopgain 1.000 0 22 hm5C_associated_SNPs_117487 0 0 1 0 2 EEF1AKMT3 chr12:58166800 3'AG 58166800 Downstream 46bp
chr12 58166845 58166845 1 + C T COAD 58166844 + 58166824 58166864 41 GAGAGTCAAAATGTGGATTTCCGAGGCAAGAAGGTGATCGA GAGAGTCAAAATGTGGATTTCTGAGGCAAGAAGGTGATCGA < 41bp 0.561996564018658 0.786827604852886 0.9124967 0.84267557 prediction 0.449662081668456 Functional Gain - EEF1AKMT3 ENSG00000123427;ENSG00000257921 CDS Human other chr12:58166844 chr12:58166845 stopgain 1.000 0 22 hm5C_associated_SNPs_117487 0 0 1 0 2 EEF1AKMT3 chr12:58166856 5'GT 58166856 Upstream 12bp
chr21 35497680 35497680 1 + C G COAD 35497679 + 35497659 35497699 41 TTGAAACGTACGATAGAGGCCCTGATGGACAGAGGAGCAAT TTGAAACGTACGATAGAGGCCGTGATGGACAGAGGAGCAAT < 41bp 0.411347877324582 0.724829660253091 0.06895381 0.11204451 prediction 0.449659320506182 Functional Gain - MRPS6 ENSG00000243927 CDS Human protein_coding chr21:35497679 chr21:35497680 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_117488 0 0 1 0 1 MRPS6 chr21:35497641 3'AG 35497641 Downstream 40bp
chr17 78059953 78059953 1 + C G rs139435501 78059949 + 78059929 78059969 41 CACAGGAGCAGGAGGAGCAGCTGGCCTCCCTGGACGCATCC CACAGGAGCAGGAGGAGCAGCTGGGCTCCCTGGACGCATCC < 41bp 0.411535513691493 0.724829446444993 0.23034126 0.62668663 prediction 0.449658892889985 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78059949 chr17:78059953 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_117489 1 0 0 0 1 CCDC40 chr17:78060015 5'GT 78060015 Upstream 63bp
chr11 2943404 2943404 1 + C G COAD 2943400 + 2943380 2943420 41 GAGGTGCTGCTCCGGGCCAGCGTGCTGGTCTTCATCGTGGT GAGGTGCTGCTCCGGGCCAGCGTGGTGGTCTTCATCGTGGT < 41bp 0.430148403750859 0.724829247973227 0.39797264 0.8334778 prediction 0.449658495946453 Functional Gain - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2943400 chr11:2943404 nonsynonymous SNV 0.428 0 25 hm5C_associated_SNPs_117490 0 0 1 0 2 SLC22A18 chr11:2943332 3'AG 2943332 Downstream 73bp
chr11 2943404 2943404 1 + C G COAD 2943400 + 2943380 2943420 41 GAGGTGCTGCTCCGGGCCAGCGTGCTGGTCTTCATCGTGGT GAGGTGCTGCTCCGGGCCAGCGTGGTGGTCTTCATCGTGGT < 41bp 0.430148403750859 0.724829247973227 0.39797264 0.8334778 prediction 0.449658495946453 Functional Gain - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2943400 chr11:2943404 nonsynonymous SNV 0.428 0 25 hm5C_associated_SNPs_117490 0 0 1 0 2 SLC22A18 chr11:2943433 5'GT 2943433 Upstream 30bp
chrX 153541064 153541064 1 + T A LUSC 153541060 + 153541040 153541080 41 ACAGCCCCCCATTGAGGACTCACCTGAAGTCAACATCACAG ACAGCCCCCCATTGAGGACTCACCAGAAGTCAACATCACAG < 41bp 0.37823733754828 0.724824793558834 0.13574404 0.13937402 prediction 0.449649587117667 Functional Gain - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153541060 chrX:153541064 synonymous SNV . 0 25 hm5C_associated_SNPs_117491 0 0 0 0 1 TKTL1 chrX:153541124 5'GT 153541124 Upstream 61bp
chr5 145442060 145442060 1 + C T UCEC 145442059 + 145442039 145442079 41 TTACACCTCCCATCCCACCTCCGGAAAGCCTGAACAGCCAG TTACACCTCCCATCCCACCTCTGGAAAGCCTGAACAGCCAG < 41bp 0.595460910268733 0.820278383036217 0.15282199 0.1546857 prediction 0.449634945534969 Functional Gain - SH3RF2 ENSG00000156463 CDS Human protein_coding chr5:145442059 chr5:145442060 synonymous SNV . 0 22 hm5C_associated_SNPs_117493 0 0 0 0 1 SH3RF2 chr5:145441989 3'AG 145441989 Downstream 72bp
chr16 720707 720707 1 + C A rs3743910 720703 + 720683 720723 41 CGCGTGCGCCCAGGCGCTGACGCGCATCTTCAGGCTCTCAG CGCGTGCGCCCAGGCGCTGACGCGAATCTTCAGGCTCTCAG < 41bp 0.711265802284883 0.936080609083445 0.39071804 0.8036218 prediction 0.449629613597125 Functional Gain - RHOT2 ENSG00000140983 CDS Human protein_coding chr16:720703 chr16:720707 synonymous SNV . 0 25 hm5C_associated_SNPs_117494 0 0 1 0 2 RHOT2 chr16:720675 3'AG 720675 Downstream 33bp
chr16 720707 720707 1 + C A rs3743910 720703 + 720683 720723 41 CGCGTGCGCCCAGGCGCTGACGCGCATCTTCAGGCTCTCAG CGCGTGCGCCCAGGCGCTGACGCGAATCTTCAGGCTCTCAG < 41bp 0.711265802284883 0.936080609083445 0.39071804 0.8036218 prediction 0.449629613597125 Functional Gain - RHOT2 ENSG00000140983 CDS Human other chr16:720703 chr16:720707 synonymous SNV . 0 25 hm5C_associated_SNPs_117494 0 0 1 0 2 RHOT2 chr16:720773 5'GT 720773 Upstream 67bp
chr19 11143993 11143993 1 + C T BLCA 11143992 + 11143972 11144012 41 CAAGCGCAGGACCGAGCCCACCGCATCGGGCAGCAGAACGA CAAGCGCAGGACCGAGCCCACTGCATCGGGCAGCAGAACGA < 41bp 0.468495652663076 0.724812313037394 0.23498294 0.26213464 prediction 0.449624626074787 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11143992 chr19:11143993 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_117495 0 0 1 0 1 SMARCA4 chr19:11143966 3'AG 11143966 Downstream 28bp
chr6 44201251 44201251 1 + C T UCEC 44201250 + 44201230 44201270 41 GCTGTTTTCTCCTTCCTGTTCCGGGCAATTGTGTGACAAAG GCTGTTTTCTCCTTCCTGTTCTGGGCAATTGTGTGACAAAG < 41bp 0.52195935890009 0.746768625061119 0.4017122 0.14739805 prediction 0.449618532322057 Functional Gain - SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44201250 chr6:44201251 nonsynonymous SNV 0.315 3 22 hm5C_associated_SNPs_117496 0 0 1 0 1 SLC29A1 chr6:44201154 3'AG 44201154 Downstream 98bp
chr9 18474230 18474230 1 + C A HNSC 18474226 + 18474206 18474246 41 TTCTGATTCCGGCAAGGATCCAAGCATGGAATGCTGCCGTC TTCTGATTCCGGCAAGGATCCAAGAATGGAATGCTGCCGTC < 41bp 0.468472432209011 0.724809139464816 0.4006099 0.46506074 prediction 0.449618278929631 Functional Gain - ADAMTSL1 ENSG00000178031 UTR5 Human protein_coding chr9:18474226 chr9:18474230 . . 0 25 hm5C_associated_SNPs_117497 0 0 0 0 1 ADAMTSL1 chr9:18474293 5'GT 18474293 Upstream 64bp
chr15 89386841 89386841 1 + C T SKCM 89386840 + 89386820 89386860 41 ATGCCAACCAGACGGGCTACCCCGACCCCTCATCCCGCTAC ATGCCAACCAGACGGGCTACCTCGACCCCTCATCCCGCTAC < 41bp 0.590316980791436 0.81512087238791 0.0328542 0.091909945 prediction 0.449607783192946 Functional Gain - ACAN ENSG00000157766 CDS Human protein_coding chr15:89386840 chr15:89386841 nonsynonymous SNV 0.555 3 22 hm5C_associated_SNPs_117499 1 0 0 0 1 ACAN chr15:89386879 5'GT 89386879 Upstream 39bp
chr22 47274574 47274574 1 + C T SKCM 47274573 + 47274553 47274593 41 ATTACGGAGGTTGAGCTGGTCCGGAATCCCTAAGCCAGTGC ATTACGGAGGTTGAGCTGGTCTGGAATCCCTAAGCCAGTGC < 41bp 0.541675291080097 0.766468328187909 0.6735777 0.52620107 prediction 0.449586074215624 Functional Gain - TBC1D22A ENSG00000054611 CDS Human protein_coding chr22:47274573 chr22:47274574 synonymous SNV . 0 22 hm5C_associated_SNPs_117501 0 0 1 0 2 TBC1D22A chr22:47274549 3'AG 47274549 Downstream 26bp
chr22 47274574 47274574 1 + C T SKCM 47274573 + 47274553 47274593 41 ATTACGGAGGTTGAGCTGGTCCGGAATCCCTAAGCCAGTGC ATTACGGAGGTTGAGCTGGTCTGGAATCCCTAAGCCAGTGC < 41bp 0.541675291080097 0.766468328187909 0.6735777 0.52620107 prediction 0.449586074215624 Functional Gain - TBC1D22A ENSG00000054611 CDS Human protein_coding chr22:47274573 chr22:47274574 synonymous SNV . 0 22 hm5C_associated_SNPs_117501 0 0 1 0 2 TBC1D22A chr22:47274619 5'GT 47274619 Upstream 46bp
chr1 10659333 10659333 1 + T G rs77261230 10659330 + 10659310 10659350 41 AGATTGATATGGCCTTCCAGCAGTCGGGCACTGCTGCCGAT AGATTGATATGGCCTTCCAGCAGGCGGGCACTGCTGCCGAT < 41bp 0.325830775781983 0.724786280692533 0.1883437 0.90865767 prediction 0.449572561385065 Functional Gain - PEX14 ENSG00000142655 CDS Human protein_coding chr1:10659330 chr1:10659333 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_117503 1 0 1 0 2 PEX14 chr1:10659295 3'AG 10659295 Downstream 39bp
chr1 10659333 10659333 1 + T G rs77261230 10659330 + 10659310 10659350 41 AGATTGATATGGCCTTCCAGCAGTCGGGCACTGCTGCCGAT AGATTGATATGGCCTTCCAGCAGGCGGGCACTGCTGCCGAT < 41bp 0.325830775781983 0.724786280692533 0.1883437 0.90865767 prediction 0.449572561385065 Functional Gain - PEX14 ENSG00000142655 CDS Human protein_coding chr1:10659330 chr1:10659333 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_117503 1 0 1 0 2 PEX14 chr1:10659423 5'GT 10659423 Upstream 91bp
chr4 2899946 2899946 1 + C T SKCM 2899945 + 2899925 2899965 41 ATGTGGCCTCTTGCCAATCTCCCCGGAGGCGCTTTCCCTTG ATGTGGCCTCTTGCCAATCTCTCCGGAGGCGCTTTCCCTTG < 41bp 0.575965542109016 0.800747850121413 0.1531952 0.7067235 prediction 0.449564616024793 Functional Gain - ADD1 ENSG00000087274 CDS Human protein_coding chr4:2899945 chr4:2899946 synonymous SNV . 0 22 hm5C_associated_SNPs_117505 0 0 1 0 1 ADD1 chr4:2899911 3'AG 2899911 Downstream 36bp
chr2 43986079 43986079 1 + C T BLCA 43986078 + 43986058 43986098 41 TCAACCAGATGGATGGCCCTCCGGGGACACAGTGCTGCTGA TCAACCAGATGGATGGCCCTCTGGGGACACAGTGCTGCTGA < 41bp 0.553303889190535 0.778075430159576 0.9114033 0.83713907 prediction 0.449543081938082 Functional Gain - PLEKHH2 ENSG00000152527 CDS Human protein_coding chr2:43986078 chr2:43986079 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_117507 0 0 1 0 2 PLEKHH2 chr2:43986039 3'AG 43986039 Downstream 41bp
chr2 43986079 43986079 1 + C T BLCA 43986078 + 43986058 43986098 41 TCAACCAGATGGATGGCCCTCCGGGGACACAGTGCTGCTGA TCAACCAGATGGATGGCCCTCTGGGGACACAGTGCTGCTGA < 41bp 0.553303889190535 0.778075430159576 0.9114033 0.83713907 prediction 0.449543081938082 Functional Gain - PLEKHH2 ENSG00000152527 CDS Human protein_coding chr2:43986078 chr2:43986079 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_117507 0 0 1 0 2 PLEKHH2 chr2:43986168 5'GT 43986168 Upstream 90bp
chr11 70033898 70033898 1 + A G LUAD 70033895 + 70033875 70033915 41 ACTGGGTCATCCCGGACATCCCCAAGGACATCAGCCAGCAG ACTGGGTCATCCCGGACATCCCCGAGGACATCAGCCAGCAG < 41bp 0.492321424149952 0.724771507090253 0.13930205 0.34733644 prediction 0.449543014180505 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70033895 chr11:70033898 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_117508 0 0 0 0 1 ANO1 chr11:70033844 3'AG 70033844 Downstream 55bp
chr12 51126176 51126176 1 + C T SKCM 51126175 + 51126155 51126195 41 GGGATCAACCTCTCCTGCGTCCGGACCTGTGTGGTGGTGGC GGGATCAACCTCTCCTGCGTCTGGACCTGTGTGGTGGTGGC < 41bp 0.470387563106859 0.724760621790997 0.17823914 0.22080234 prediction 0.449521243581994 Functional Gain - DIP2B ENSG00000066084 CDS Human protein_coding chr12:51126175 chr12:51126176 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_117510 0 0 1 0 1 DIP2B chr12:51126149 3'AG 51126149 Downstream 28bp
chr3 51978458 51978458 1 + A G STAD 51978455 + 51978435 51978475 41 CTTCACAAGGCTAGAAGATGCAAAGAAGGACTTTGAGAAGA CTTCACAAGGCTAGAAGATGCAAGGAAGGACTTTGAGAAGA < 41bp 0.529442377158512 0.754200826852368 0.21081463 0.4193063 prediction 0.449516899387712 Functional Gain - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51978455 chr3:51978458 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_117512 0 0 1 0 1 PARP3 chr3:51978406 3'AG 51978406 Downstream 53bp
chr15 23609981 23609981 1 + C T rs543685107 23609980 + 23609960 23610000 41 TGATGAGCCCGGTCCAGGAGCCCCAGCCCCCCAGGAGCTTG TGATGAGCCCGGTCCAGGAGCTCCAGCCCCCCAGGAGCTTG < 41bp 0.570542962817589 0.795301272397488 0.09821007 0.42869923 prediction 0.449516619159797 Functional Gain - GOLGA8S ENSG00000261739 CDS Human protein_coding chr15:23609980 chr15:23609981 synonymous SNV . 0 22 hm5C_associated_SNPs_117514 0 0 0 0 1 GOLGA8S chr15:23610021 5'GT 23610021 Upstream 41bp
chr17 5998538 5998538 1 + C T SKCM 5998537 + 5998517 5998557 41 ACTTGCTCGGGCTTTTGTTCCCAGAAAGTAAGACCAAGTGA ACTTGCTCGGGCTTTTGTTCCTAGAAAGTAAGACCAAGTGA < 41bp 0.462885180771396 0.7247532772622 0.27705848 0.2568964 prediction 0.4495065545244 Functional Gain - WSCD1 ENSG00000179314 CDS Human protein_coding chr17:5998537 chr17:5998538 stopgain 0.992 0 22 hm5C_associated_SNPs_117517 0 0 0 0 1 WSCD1 chr17:5998543 5'GT 5998543 Upstream 6bp
chr2 20075648 20075648 1 + C G rs73920429 20075647 + 20075627 20075667 41 ACTACATGCTGAGCGTGGGTCCAGATGGGAAACCATTCTCC ACTACATGCTGAGCGTGGGTCGAGATGGGAAACCATTCTCC < 41bp 0.419089427648396 0.72475255735912 0.3599335 0.65233123 prediction 0.44950511471824 Functional Gain - LINC00954 ENSG00000228784 ncRNA_exonic Human lincRNA chr2:20075647 chr2:20075648 . . 0 22 hm5C_associated_SNPs_117518 0 0 0 0 2 LINC00954 chr2:20075564 3'AG 20075564 Downstream 85bp
chr2 20075648 20075648 1 + C G rs73920429 20075647 + 20075627 20075667 41 ACTACATGCTGAGCGTGGGTCCAGATGGGAAACCATTCTCC ACTACATGCTGAGCGTGGGTCGAGATGGGAAACCATTCTCC < 41bp 0.419089427648396 0.72475255735912 0.3599335 0.65233123 prediction 0.44950511471824 Functional Gain - LINC00954 ENSG00000228784 ncRNA_exonic Human lincRNA chr2:20075647 chr2:20075648 . . 0 22 hm5C_associated_SNPs_117518 0 0 0 0 2 LINC00954 chr2:20075704 5'GT 20075704 Upstream 57bp
chr1 15421425 15421425 1 + C T UCEC 15421424 + 15421404 15421444 41 TACCGTGATGCCGAGGCAGGCCGCAGGTGAGCCCACCACGA TACCGTGATGCCGAGGCAGGCTGCAGGTGAGCCCACCACGA < 41bp 0.518128657992951 0.742879878765138 0.5942198 0.83465767 prediction 0.449502441544375 Functional Gain - KAZN ENSG00000189337 CDS Human protein_coding chr1:15421424 chr1:15421425 nonsynonymous SNV 0.788 1 22 hm5C_associated_SNPs_117519 0 0 0 0 1 KAZN chr1:15421429 5'GT 15421429 Upstream 5bp
chr7 6639834 6639834 1 + T G KIRP 6639831 + 6639811 6639851 41 ATGGGCGCCTGGGGCTGATCCTCTTCGACCACATGGTCCCG ATGGGCGCCTGGGGCTGATCCTCGTCGACCACATGGTCCCG < 41bp 0.326958957200957 0.724745242035462 0.032046944 0.10829952 prediction 0.449490484070924 Functional Gain - C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6639831 chr7:6639834 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_117521 0 0 0 0 1 C7orf26 chr7:6639758 3'AG 6639758 Downstream 77bp
chr15 68126152 68126152 1 + T G BLCA 68126150 + 68126130 68126170 41 CACTGCACTGGCAACTGCTCCTTCAAGCCACCGCTGTTGCC CACTGCACTGGCAACTGCTCCTGCAAGCCACCGCTGTTGCC < 41bp 0.392283910117246 0.724744538739104 0.17321715 0.23302034 prediction 0.449489077478209 Functional Gain - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68126150 chr15:68126152 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_117522 0 0 0 0 1 SKOR1 chr15:68126080 3'AG 68126080 Downstream 73bp
chr19 35510321 35510321 1 + C T rs147041737 35510320 + 35510300 35510340 41 GTTCCGGCGCGGCCCCCAGGCCGGCGGGTGTGTGGTGGACT GTTCCGGCGCGGCCCCCAGGCTGGCGGGTGTGTGGTGGACT < 41bp 0.480155581925441 0.724740734564601 0.37810743 0.3578048 prediction 0.449481469129202 Functional Gain - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35510320 chr19:35510321 synonymous SNV . 0 22 hm5C_associated_SNPs_117525 0 0 1 0 1 GRAMD1A chr19:35510295 3'AG 35510295 Downstream 27bp
chr20 13260512 13260512 1 + C T STAD 13260511 + 13260491 13260531 41 GACCATACAGCCCCAGGCCACCGGACTTTTGAAACCAAAGA GACCATACAGCCCCAGGCCACTGGACTTTTGAAACCAAAGA < 41bp 0.573473239467549 0.798213429216481 0.033075184 0.03026712 prediction 0.449480379497864 Functional Gain - ISM1 ENSG00000101230 CDS Human protein_coding chr20:13260511 chr20:13260512 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_117526 0 0 0 0 1 ISM1 chr20:13260545 5'GT 13260545 Upstream 34bp
chr8 43173622 43173622 1 + T C STAD 43173620 + 43173600 43173640 41 TTGAAGAAGAAATGCAGAAGCATGGAAGTAATAATGTGGGA TTGAAGAAGAAATGCAGAAGCACGGAAGTAATAATGTGGGA < 41bp 0.536469818110332 0.761209335556499 0.24736214 0.37702352 prediction 0.449479034892332 Functional Gain - POTEA ENSG00000188877 ncRNA_exonic Human polymorphic_pseudogene chr8:43173620 chr8:43173622 . . 0 23 hm5C_associated_SNPs_117527 0 0 0 0 1 POTEA chr8:43173599 3'AG 43173599 Downstream 24bp
chr3 183858243 183858243 1 + A G LAML 183858240 + 183858220 183858260 41 GATCCACATGCACGTAACAGCTAAGGAATATGGTGCCCGTG GATCCACATGCACGTAACAGCTAGGGAATATGGTGCCCGTG < 41bp 0.555423784532502 0.780160387067987 0.33832836 0.3398335 prediction 0.44947320507097 Functional Gain - EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183858240 chr3:183858243 nonsynonymous SNV 0.985 1 24 hm5C_associated_SNPs_117528 0 0 1 0 1 EIF2B5 chr3:183858206 3'AG 183858206 Downstream 38bp
chr19 35761708 35761708 1 + C T LUAD 35761707 + 35761687 35761727 41 CCCGGACACACCCTTACTCTCCGTATGTGCAGGGGACACCT CCCGGACACACCCTTACTCTCTGTATGTGCAGGGGACACCT < 41bp 0.46314757110929 0.724733482334733 0.22063836 0.5652324 prediction 0.449466964669467 Functional Gain - USF2 ENSG00000105698 CDS Human protein_coding chr19:35761707 chr19:35761708 nonsynonymous SNV 0.982 1 22 hm5C_associated_SNPs_117530 0 0 1 0 3 USF2 chr19:35761621 3'AG 35761621 Downstream 88bp
chr19 35761708 35761708 1 + C T LUAD 35761707 + 35761687 35761727 41 CCCGGACACACCCTTACTCTCCGTATGTGCAGGGGACACCT CCCGGACACACCCTTACTCTCTGTATGTGCAGGGGACACCT < 41bp 0.46314757110929 0.724733482334733 0.22063836 0.5652324 prediction 0.449466964669467 Functional Gain - USF2 ENSG00000105698 CDS Human protein_coding chr19:35761707 chr19:35761708 nonsynonymous SNV 0.982 1 22 hm5C_associated_SNPs_117530 0 0 1 0 3 USF2 chr19:35761662 3'AG 35761662 Downstream 47bp
chr19 35761708 35761708 1 + C T LUAD 35761707 + 35761687 35761727 41 CCCGGACACACCCTTACTCTCCGTATGTGCAGGGGACACCT CCCGGACACACCCTTACTCTCTGTATGTGCAGGGGACACCT < 41bp 0.46314757110929 0.724733482334733 0.22063836 0.5652324 prediction 0.449466964669467 Functional Gain - USF2 ENSG00000105698 CDS Human protein_coding chr19:35761707 chr19:35761708 nonsynonymous SNV 0.982 1 22 hm5C_associated_SNPs_117530 0 0 1 0 3 USF2 chr19:35761708 5'GT 35761708 Upstream 1bp
chr17 2278842 2278842 1 + C T LUAD 2278841 + 2278821 2278861 41 GCCCCAGGACCCTGAAGATTCCAGACCAAAACCTGAGCAGG GCCCCAGGACCCTGAAGATTCTAGACCAAAACCTGAGCAGG < 41bp 0.564912831379455 0.789632577929015 0.893101 0.8766242 prediction 0.449439493099119 Functional Gain - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2278841 chr17:2278842 synonymous SNV . 0 22 hm5C_associated_SNPs_117537 0 0 1 0 1 SGSM2 chr17:2278786 3'AG 2278786 Downstream 57bp
chr19 46375409 46375409 1 + C A COAD 46375408 + 46375388 46375428 41 CCCTGAATCCTCTAAGCTCTCCCTATCCCCCTGGGGGGCTC CCCTGAATCCTCTAAGCTCTCACTATCCCCCTGGGGGGCTC < 41bp 0.601553436355328 0.82626856691909 0.06641871 0.056229234 prediction 0.449430261127525 Functional Gain - FOXA3 ENSG00000170608 CDS Human protein_coding chr19:46375408 chr19:46375409 nonsynonymous SNV 0.900 3 22 hm5C_associated_SNPs_117540 0 0 1 0 1 FOXA3 chr19:46375333 3'AG 46375333 Downstream 77bp
chr18 21109199 21109199 1 + C T UCEC 21109198 + 21109178 21109218 41 CCTCAAGAGGCCGGTGCGGACCCAGGCGGTGCTGGACCAGT CCTCAAGAGGCCGGTGCGGACTCAGGCGGTGCTGGACCAGT < 41bp 0.598350676055235 0.82305883332775 0.18565637 0.26200816 prediction 0.449416314545032 Functional Gain - C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21109198 chr18:21109199 synonymous SNV . 0 22 hm5C_associated_SNPs_117541 0 0 1 0 2 C18orf8 chr18:21109143 3'AG 21109143 Downstream 57bp
chr18 21109199 21109199 1 + C T UCEC 21109198 + 21109178 21109218 41 CCTCAAGAGGCCGGTGCGGACCCAGGCGGTGCTGGACCAGT CCTCAAGAGGCCGGTGCGGACTCAGGCGGTGCTGGACCAGT < 41bp 0.598350676055235 0.82305883332775 0.18565637 0.26200816 prediction 0.449416314545032 Functional Gain - C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21109198 chr18:21109199 synonymous SNV . 0 22 hm5C_associated_SNPs_117541 0 0 1 0 2 C18orf8 chr18:21109262 5'GT 21109262 Upstream 64bp
chr5 74641438 74641438 1 + C A SKCM 74641437 + 74641417 74641457 41 CCTACTTTTGATTGACCTTTCCAGAGCAAGCACATTAGCAA CCTACTTTTGATTGACCTTTCAAGAGCAAGCACATTAGCAA < 41bp 0.578921103524947 0.803624036379788 0.77675676 0.42526272 prediction 0.449405865709684 Functional Gain - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74641437 chr5:74641438 synonymous SNV . 0 22 hm5C_associated_SNPs_117544 0 0 1 0 1 HMGCR chr5:74641483 5'GT 74641483 Upstream 46bp
chr14 21464991 21464991 1 + C T SKCM 21464990 + 21464970 21465010 41 GCTCCTGGGGAGATCTTTTACCTGTGCTTACTCCGTCTGCG GCTCCTGGGGAGATCTTTTACTTGTGCTTACTCCGTCTGCG < 41bp 0.495107015321654 0.724697578788154 0.6042956 0.5844822 prediction 0.449395157576307 Functional Gain - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21464990 chr14:21464991 nonsynonymous SNV 0.960 3 22 hm5C_associated_SNPs_117546 0 0 1 0 2 METTL17 chr14:21464944 3'AG 21464944 Downstream 48bp
chr14 21464991 21464991 1 + C T SKCM 21464990 + 21464970 21465010 41 GCTCCTGGGGAGATCTTTTACCTGTGCTTACTCCGTCTGCG GCTCCTGGGGAGATCTTTTACTTGTGCTTACTCCGTCTGCG < 41bp 0.495107015321654 0.724697578788154 0.6042956 0.5844822 prediction 0.449395157576307 Functional Gain - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21464990 chr14:21464991 nonsynonymous SNV 0.960 3 22 hm5C_associated_SNPs_117546 0 0 1 0 2 METTL17 chr14:21464971 3'AG 21464971 Downstream 21bp
chr17 16321165 16321165 1 + A G UCEC 16321162 + 16321142 16321182 41 ATAAGAGTCAACCTCAACTACCGAAAGGGAACAGGTGCCAG ATAAGAGTCAACCTCAACTACCGGAAGGGAACAGGTGCCAG < 41bp 0.561824334416102 0.786521060130355 0.10789585 0.24029887 prediction 0.449393451428505 Functional Gain - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16321162 chr17:16321165 synonymous SNV . 0 24 hm5C_associated_SNPs_117547 0 0 1 0 1 TRPV2 chr17:16321182 5'GT 16321182 Upstream 18bp
chr15 40657409 40657409 1 + C T LUSC 40657408 + 40657388 40657428 41 AGTGCCCAGGAGAGCGCTGTCCGGCCTCGGAGAATGGTGGA AGTGCCCAGGAGAGCGCTGTCTGGCCTCGGAGAATGGTGGA < 41bp 0.492190950852085 0.724689403443492 0.4946455 0.16533393 prediction 0.449378806886983 Functional Gain - DISP2 ENSG00000140323 CDS Human protein_coding chr15:40657408 chr15:40657409 nonsynonymous SNV 0.028 2 22 hm5C_associated_SNPs_117550 0 0 0 0 2 DISP2 chr15:40657348 3'AG 40657348 Downstream 62bp
chr15 40657409 40657409 1 + C T LUSC 40657408 + 40657388 40657428 41 AGTGCCCAGGAGAGCGCTGTCCGGCCTCGGAGAATGGTGGA AGTGCCCAGGAGAGCGCTGTCTGGCCTCGGAGAATGGTGGA < 41bp 0.492190950852085 0.724689403443492 0.4946455 0.16533393 prediction 0.449378806886983 Functional Gain - DISP2 ENSG00000140323 CDS Human protein_coding chr15:40657408 chr15:40657409 nonsynonymous SNV 0.028 2 22 hm5C_associated_SNPs_117550 0 0 0 0 2 DISP2 chr15:40657475 5'GT 40657475 Upstream 67bp
chr6 4087933 4087933 1 + C T UCEC 4087932 + 4087912 4087952 41 CTGATGGAGACGCTTTATTCCCGCAAGAGTGAAGAGGACAA CTGATGGAGACGCTTTATTCCTGCAAGAGTGAAGAGGACAA < 41bp 0.491776581718454 0.724689024635656 0.1875076 0.3177846 prediction 0.449378049271311 Functional Gain - C6orf201 ENSG00000185689 CDS Human protein_coding chr6:4087932 chr6:4087933 nonsynonymous SNV 0.067 1 22 hm5C_associated_SNPs_117551 0 0 0 0 1 C6orf201 chr6:4087960 5'GT 4087960 Upstream 28bp
chr1 33764617 33764617 1 + C G rs55887741 33764616 + 33764596 33764636 41 GCCCCAGAGGACGGAGTCCCCCGGCATCCCGGTGCGAATCT GCCCCAGAGGACGGAGTCCCCGGGCATCCCGGTGCGAATCT < 41bp 0.650700736936155 0.875377083103492 0.8238376 0.9075347 prediction 0.449352692334675 Functional Gain - ZNF362 ENSG00000160094 CDS Human protein_coding chr1:33764616 chr1:33764617 synonymous SNV . 0 22 hm5C_associated_SNPs_117555 0 0 1 0 1 ZNF362 chr1:33764531 3'AG 33764531 Downstream 87bp
chr4 158254083 158254083 1 + C A COAD 158254079 + 158254059 158254099 41 GGGGGAATGCAGGAGACTGTCTGGCAAACCCAGCAGTGCCC GGGGGAATGCAGGAGACTGTCTGGAAAACCCAGCAGTGCCC < 41bp 0.70647924420666 0.931153598857172 0.40496257 0.49419072 prediction 0.449348709301024 Functional Gain - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158254079 chr4:158254083 nonsynonymous SNV 0.957 4 25 hm5C_associated_SNPs_117557 0 0 0 0 1 GRIA2 chr4:158254138 5'GT 158254138 Upstream 56bp
chr2 24239089 24239089 1 + C G MESO 24239088 + 24239068 24239108 41 GTGTCTGGGGCGGCTGCTGACCCTGTGGCTGGGTTCTTCAT GTGTCTGGGGCGGCTGCTGACGCTGTGGCTGGGTTCTTCAT < 41bp 0.395933062642767 0.724674227324365 0.0674274 0.2351996 prediction 0.449348454648729 Functional Gain - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24239088 chr2:24239089 nonsynonymous SNV 0.877 4 22 hm5C_associated_SNPs_117558 0 0 1 0 2 MFSD2B chr2:24239026 3'AG 24239026 Downstream 64bp
chr2 24239089 24239089 1 + C G MESO 24239088 + 24239068 24239108 41 GTGTCTGGGGCGGCTGCTGACCCTGTGGCTGGGTTCTTCAT GTGTCTGGGGCGGCTGCTGACGCTGTGGCTGGGTTCTTCAT < 41bp 0.395933062642767 0.724674227324365 0.0674274 0.2351996 prediction 0.449348454648729 Functional Gain - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24239088 chr2:24239089 nonsynonymous SNV 0.877 4 22 hm5C_associated_SNPs_117558 0 0 1 0 2 MFSD2B chr2:24239150 5'GT 24239150 Upstream 62bp
chr13 102250616 102250616 1 + C T OV 102250615 + 102250595 102250635 41 GAGGAGAGCATCAGGAAGTGCCAGGGAAGCTCGGATCTGCC GAGGAGAGCATCAGGAAGTGCTAGGGAAGCTCGGATCTGCC < 41bp 0.485162987887974 0.724670042026821 0.7825284 0.738253 prediction 0.449340084053641 Functional Gain - ITGBL1 ENSG00000198542 CDS Human protein_coding chr13:102250615 chr13:102250616 stopgain 0.846 0 22 hm5C_associated_SNPs_117560 0 0 0 0 1 ITGBL1 chr13:102250649 5'GT 102250649 Upstream 34bp
chr1 15809791 15809791 1 + C A LUAD 15809790 + 15809770 15809810 41 CCCTGCTCAAACTGGCTAACCCCGTCTCCCTCACCGACAAG CCCTGCTCAAACTGGCTAACCACGTCTCCCTCACCGACAAG < 41bp 0.463771386398316 0.724669779567539 0.20509413 0.35391268 prediction 0.449339559135079 Functional Gain - CELA2B ENSG00000215704 CDS Human protein_coding chr1:15809790 chr1:15809791 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_117561 0 0 0 0 1 CELA2B chr1:15809759 3'AG 15809759 Downstream 33bp
chr19 50962411 50962411 1 + C T CESC 50962410 + 50962390 50962430 41 TGTGGACCAAGGGCGGGGCCCCGCTGGACACCTCCCGCGTG TGTGGACCAAGGGCGGGGCCCTGCTGGACACCTCCCGCGTG < 41bp 0.550485972187292 0.775148925712022 0.2991284 0.18989834 prediction 0.449325907049461 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50962410 chr19:50962411 nonsynonymous SNV 0.017 0 22 hm5C_associated_SNPs_117564 0 0 0 0 1 MYBPC2 chr19:50962368 3'AG 50962368 Downstream 44bp
chr1 192127869 192127869 1 + C G BLCA 192127865 + 192127845 192127885 41 TGGTTCAGGAAAAGAAGAAACAAGCAAAGAAGCCAAAATCA TGGTTCAGGAAAAGAAGAAACAAGGAAAGAAGCCAAAATCA < 41bp 0.479119685491097 0.724661625024966 0.43063474 0.8613285 prediction 0.449323250049933 Functional Gain - RGS18 ENSG00000150681 CDS Human protein_coding chr1:192127865 chr1:192127869 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_117565 0 0 0 0 1 RGS18 chr1:192127886 5'GT 192127886 Upstream 18bp
chr3 40351458 40351458 1 + C A UCEC 40351454 + 40351434 40351474 41 TGTCCACTATCCAGAACCTCCAATCTTTCGGTAAGATCCCG TGTCCACTATCCAGAACCTCCAATATTTCGGTAAGATCCCG < 41bp 0.334444014867283 0.724659613902983 0.056220204 0.16551584 prediction 0.449319227805966 Functional Gain - EIF1B ENSG00000114784 CDS Human protein_coding chr3:40351454 chr3:40351458 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_117567 0 0 1 0 1 EIF1B chr3:40351463 5'GT 40351463 Upstream 6bp
chr19 11548906 11548906 1 + A G LIHC 11548903 + 11548883 11548923 41 CACAGACTGCTGCGATGGAACAGACGAGTACAACAGCGGCG CACAGACTGCTGCGATGGAACAGGCGAGTACAACAGCGGCG < 41bp 0.472388916671264 0.724653533608048 0.32586405 0.7625903 prediction 0.449307067216095 Functional Gain - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11548903 chr19:11548906 nonsynonymous SNV 0.984 4 24 hm5C_associated_SNPs_117569 0 0 1 0 2 PRKCSH chr19:11548888 3'AG 11548888 Downstream 19bp
chr19 11548906 11548906 1 + A G LIHC 11548903 + 11548883 11548923 41 CACAGACTGCTGCGATGGAACAGACGAGTACAACAGCGGCG CACAGACTGCTGCGATGGAACAGGCGAGTACAACAGCGGCG < 41bp 0.472388916671264 0.724653533608048 0.32586405 0.7625903 prediction 0.449307067216095 Functional Gain - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11548903 chr19:11548906 nonsynonymous SNV 0.984 4 24 hm5C_associated_SNPs_117569 0 0 1 0 2 PRKCSH chr19:11548945 5'GT 11548945 Upstream 40bp
chr17 10633181 10633181 1 - A C rs3826448 10633183 - 10633163 10633203 41 CAGGACTCACCGCCCCGCGCCGTGTTCTCCGAGCCATGGCG CAGGACTCACCGCCCCGCGCCGGGTTCTCCGAGCCATGGCG < 41bp 0.463801761015 0.724653476801838 0.031984985 0.40116885 prediction 0.449306953603675 Functional Gain - TMEM220-AS1 ENSG00000263400 ncRNA_exonic Human protein_coding chr17:10633183 chr17:10633181 . . 0 23 hm5C_associated_SNPs_117570 0 0 0 0 1 TMEM220 chr17:10633097 5'GT 10633097 Upstream 85bp
chr4 1348913 1348913 1 + C T SKCM 1348912 + 1348892 1348932 41 CCCCGTTTCGCAGCGCTTCACCCGCGTCGGGACCCACGGTG CCCCGTTTCGCAGCGCTTCACTCGCGTCGGGACCCACGGTG < 41bp 0.471643806975653 0.724650258309649 0.24949831 0.38897562 prediction 0.449300516619298 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1348912 chr4:1348913 synonymous SNV . 0 22 hm5C_associated_SNPs_117573 0 0 1 0 1 UVSSA chr4:1348905 3'AG 1348905 Downstream 9bp
chr1 43260179 43260179 1 + T C rs375220738 43260176 + 43260156 43260196 41 CCAAAGGCAACAGGTTCATCCTCTGCTGCATGGCCTCACTC CCAAAGGCAACAGGTTCATCCTCCGCTGCATGGCCTCACTC < 41bp 0.507566187141227 0.732215850969977 0.1273152 0.04666522 prediction 0.449299327657499 Functional Gain - TMEM269 ENSG00000164008 CDS Human protein_coding chr1:43260176 chr1:43260179 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_117574 0 0 1 0 1 TMEM269 chr1:43260084 3'AG 43260084 Downstream 96bp
chr16 129665 129665 1 + C T UCEC 129664 + 129644 129684 41 GGTTGGAGTTCTTCGACCAGCCGGCAGTCCCCCTGGCCCGG GGTTGGAGTTCTTCGACCAGCTGGCAGTCCCCCTGGCCCGG < 41bp 0.530925829329678 0.755570462753254 0.7839974 0.39456618 prediction 0.449289266847152 Functional Gain - MPG ENSG00000103152 CDS Human protein_coding chr16:129664 chr16:129665 nonsynonymous SNV 0.184 4 22 hm5C_associated_SNPs_117577 0 0 1 0 1 MPG chr16:129699 5'GT 129699 Upstream 35bp
chr22 51021693 51021693 1 + C G rs143769659 51021692 + 51021672 51021712 41 CCCTTGCCGGGCCCTCTTCCCCGACCCCTGGGGCGCTCCGA CCCTTGCCGGGCCCTCTTCCCGGACCCCTGGGGCGCTCCGA < 41bp 0.429069971378435 0.724635543244352 0.5557725 0.89821833 prediction 0.449271086488704 Functional Gain - CHKB-AS1 ENSG00000205559 ncRNA_exonic Human antisense chr22:51021692 chr22:51021693 . . 0 22 hm5C_associated_SNPs_117579 0 0 0 0 1 CHKB-AS1 chr22:51021752 5'GT 51021752 Upstream 60bp
chr12 3129844 3129844 1 + C T LUAD 3129843 + 3129823 3129863 41 GCCCCATCGCCCTCTGCGCCCCCGGCACCCCCATGGCAGGG GCCCCATCGCCCTCTGCGCCCTCGGCACCCCCATGGCAGGG < 41bp 0.577959606919724 0.802589630589584 0.3124628 0.21800372 prediction 0.449260047339721 Functional Gain - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3129843 chr12:3129844 nonsynonymous SNV 0.034 0 22 hm5C_associated_SNPs_117580 0 0 1 0 1 TEAD4 chr12:3129939 5'GT 3129939 Upstream 96bp
chr1 110581370 110581370 1 + C A SARC 110581369 + 110581349 110581389 41 AAATGCTTTGAGGAGGACTTCCGGATCCATGGTGAGATGAT AAATGCTTTGAGGAGGACTTCAGGATCCATGGTGAGATGAT < 41bp 0.532618851256768 0.757242735987374 0.8763317 0.8661196 prediction 0.449247769461212 Functional Gain - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110581369 chr1:110581370 synonymous SNV . 0 22 hm5C_associated_SNPs_117581 0 0 1 0 2 STRIP1 chr1:110581305 3'AG 110581305 Downstream 66bp
chr1 110581370 110581370 1 + C A SARC 110581369 + 110581349 110581389 41 AAATGCTTTGAGGAGGACTTCCGGATCCATGGTGAGATGAT AAATGCTTTGAGGAGGACTTCAGGATCCATGGTGAGATGAT < 41bp 0.532618851256768 0.757242735987374 0.8763317 0.8661196 prediction 0.449247769461212 Functional Gain - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110581369 chr1:110581370 synonymous SNV . 0 22 hm5C_associated_SNPs_117581 0 0 1 0 2 STRIP1 chr1:110581379 5'GT 110581379 Upstream 10bp
chr2 74783473 74783473 1 + A G UCEC 74783470 + 74783450 74783490 41 GAGGCCGGCCGCCGCTGCCCCTCAGGCCCTGGAACCTTCAC GAGGCCGGCCGCCGCTGCCCCTCGGGCCCTGGAACCTTCAC < 41bp 0.561183259837274 0.785805965859963 0.078891665 0.18413225 prediction 0.449245412045379 Functional Gain - DOK1 ENSG00000115325 CDS Human protein_coding chr2:74783470 chr2:74783473 nonsynonymous SNV 0.963 1 24 hm5C_associated_SNPs_117582 0 0 1 0 1 DOK1 chr2:74783435 3'AG 74783435 Downstream 39bp
chr6 74104798 74104798 1 + C T COAD 74104797 + 74104777 74104817 41 GCTGGAGAGGCACCTCTAGGCCCCCGGAGGCCGTGGCCGCT GCTGGAGAGGCACCTCTAGGCTCCCGGAGGCCGTGGCCGCT < 41bp 0.505947021347008 0.730569608346003 0.09509876 0.20816797 prediction 0.44924517399799 Functional Gain - DDX43 ENSG00000080007 CDS Human protein_coding chr6:74104797 chr6:74104798 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_117583 0 0 0 0 1 DDX43 chr6:74104878 5'GT 74104878 Upstream 81bp
chr11 59857197 59857197 1 + C T SKCM 59857196 + 59857176 59857216 41 TTGAAGTCTTGGAAATATCTCCCCAGGAAGTATCTTCAGGC TTGAAGTCTTGGAAATATCTCTCCAGGAAGTATCTTCAGGC < 41bp 0.576212592693379 0.800824341064258 0.023198843 0.7702139 prediction 0.449223496741759 Functional Gain - MS4A2 ENSG00000149534 CDS Human protein_coding chr11:59857196 chr11:59857197 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_117589 0 0 0 0 1 MS4A2 chr11:59857294 5'GT 59857294 Upstream 98bp
chr7 37907467 37907467 1 + T A LUAD 37907463 + 37907443 37907483 41 ATCAACCTGAGGTCGAAGCCCAGGTTACACCTGGAATGATG ATCAACCTGAGGTCGAAGCCCAGGATACACCTGGAATGATG < 41bp 0.642754971079043 0.867366533413292 0.37199754 0.401711 prediction 0.449223124668497 Functional Gain - NME8 ENSG00000086288 CDS Human protein_coding chr7:37907463 chr7:37907467 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_117590 0 0 0 0 1 NME8 chr7:37907500 5'GT 37907500 Upstream 34bp
chr16 5053437 5053437 1 + A G UCEC 5053434 + 5053414 5053454 41 GCCTGCTAGACCTGGAGGGACTCAACATGCGGCACCTGTGG GCCTGCTAGACCTGGAGGGACTCGACATGCGGCACCTGTGG < 41bp 0.566748132953354 0.791357092558608 0.21800214 0.89366114 prediction 0.449217919210509 Functional Gain - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5053434 chr16:5053437 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_117591 0 0 0 0 1 SEC14L5 chr16:5053403 3'AG 5053403 Downstream 35bp
chr1 50666606 50666606 1 + T C COAD 50666604 + 50666584 50666624 41 ACAGGAACTGGGTGGTGCATCTTTGTCTACAACCTGTCCCC ACAGGAACTGGGTGGTGCATCTCTGTCTACAACCTGTCCCC < 41bp 0.449596282089963 0.724606112582157 0.023421973 0.04285869 prediction 0.449212225164314 Functional Gain - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50666604 chr1:50666606 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_117593 0 0 0 0 1 ELAVL4 chr1:50666523 3'AG 50666523 Downstream 84bp
chrX 152770136 152770136 1 + C A COAD 152770132 + 152770112 152770152 41 TGTCTCTGCTGGCCCTGAGCCAGGCCCTGCCCTTTGAGCAG TGTCTCTGCTGGCCCTGAGCCAGGACCTGCCCTTTGAGCAG < 41bp 0.707084890495432 0.931686177312786 0.76955676 0.8565225 prediction 0.449202573634709 Functional Gain - BGN ENSG00000182492 CDS Human protein_coding chrX:152770132 chrX:152770136 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_117595 0 0 0 0 1 BGN chrX:152770079 3'AG 152770079 Downstream 58bp
chr11 1078638 1078638 1 + C A rs370849615 1078637 + 1078617 1078657 41 CTCCCACGCCGGCGGCCGGCCCGGGAACTGGAGGACCGCCA CTCCCACGCCGGCGGCCGGCCAGGGAACTGGAGGACCGCCA < 41bp 0.470831239409199 0.724596657804525 0.870232 0.9046106 prediction 0.449193315609049 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1078637 chr11:1078638 synonymous SNV . 0 22 hm5C_associated_SNPs_117597 0 0 0 0 1 MUC2 chr11:1078666 5'GT 1078666 Upstream 29bp
chr2 242105809 242105809 1 + T C OV 242105806 + 242105786 242105826 41 ACCTGGTGAACCTGCGGGAGCTGTACCTTAGCCACAATGGC ACCTGGTGAACCTGCGGGAGCTGCACCTTAGCCACAATGGC < 41bp 0.501476037094378 0.726062755901965 0.30597997 0.2177284 prediction 0.449173437615174 Functional Gain - PPP1R7 ENSG00000115685 CDS Human protein_coding chr2:242105806 chr2:242105809 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_117602 0 0 1 0 2 PPP1R7 chr2:242105752 3'AG 242105752 Downstream 58bp
chr2 242105809 242105809 1 + T C OV 242105806 + 242105786 242105826 41 ACCTGGTGAACCTGCGGGAGCTGTACCTTAGCCACAATGGC ACCTGGTGAACCTGCGGGAGCTGCACCTTAGCCACAATGGC < 41bp 0.501476037094378 0.726062755901965 0.30597997 0.2177284 prediction 0.449173437615174 Functional Gain - PPP1R7 ENSG00000115685 CDS Human protein_coding chr2:242105806 chr2:242105809 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_117602 0 0 1 0 2 PPP1R7 chr2:242105856 5'GT 242105856 Upstream 48bp
chr3 122880297 122880297 1 + C T UCEC 122880296 + 122880276 122880316 41 GCAGAAAAGTATGACAGCGACCGCACAGTAAGTGGGGGAGA GCAGAAAAGTATGACAGCGACTGCACAGTAAGTGGGGGAGA < 41bp 0.582084214905903 0.80666822534599 0.13431188 0.32806003 prediction 0.449168020880174 Functional Gain - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122880296 chr3:122880297 nonsynonymous SNV 0.475 4 22 hm5C_associated_SNPs_117604 0 0 1 0 1 PDIA5 chr3:122880302 5'GT 122880302 Upstream 6bp
chrX 73751176 73751176 1 + C T OV 73751175 + 73751155 73751195 41 TTGACTGTTTCAGGCCTACTCCGCAACTGTTTTGGGGACTA TTGACTGTTTCAGGCCTACTCTGCAACTGTTTTGGGGACTA < 41bp 0.573236510190767 0.797819236324596 0.27222914 0.4232688 prediction 0.449165452267659 Functional Gain - SLC16A2 ENSG00000147100 CDS Human protein_coding chrX:73751175 chrX:73751176 nonsynonymous SNV 0.978 1 22 hm5C_associated_SNPs_117606 0 0 0 0 1 SLC16A2 chrX:73751168 3'AG 73751168 Downstream 9bp
chr15 41641345 41641345 1 + T A UCEC 41641341 + 41641321 41641361 41 CTTGTGATGAGACTGAGATACAGATCAGCAACCAGGAAGAA CTTGTGATGAGACTGAGATACAGAACAGCAACCAGGAAGAA < 41bp 0.427514208637158 0.724579092477481 0.2521865 0.19799307 prediction 0.449158184954961 Functional Gain - NUSAP1 ENSG00000137804 CDS Human protein_coding chr15:41641341 chr15:41641345 nonsynonymous SNV 0.220 0 25 hm5C_associated_SNPs_117608 0 0 1 0 2 NUSAP1 chr15:41641296 3'AG 41641296 Downstream 50bp
chr15 41641345 41641345 1 + T A UCEC 41641341 + 41641321 41641361 41 CTTGTGATGAGACTGAGATACAGATCAGCAACCAGGAAGAA CTTGTGATGAGACTGAGATACAGAACAGCAACCAGGAAGAA < 41bp 0.427514208637158 0.724579092477481 0.2521865 0.19799307 prediction 0.449158184954961 Functional Gain - NUSAP1 ENSG00000137804 CDS Human protein_coding chr15:41641341 chr15:41641345 nonsynonymous SNV 0.220 0 25 hm5C_associated_SNPs_117608 0 0 1 0 2 NUSAP1 chr15:41641439 5'GT 41641439 Upstream 95bp
chr2 119735461 119735461 1 + C G LUAD 119735460 + 119735440 119735480 41 GCGATGGGGGTCTCATTGGCCCAAAAGGGGAAACTGGAACT GCGATGGGGGTCTCATTGGCCGAAAAGGGGAAACTGGAACT < 41bp 0.399745201953321 0.724578878705234 0.11254063 0.25774798 prediction 0.449157757410468 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119735460 chr2:119735461 nonsynonymous SNV 0.159 4 22 hm5C_associated_SNPs_117609 0 0 0 0 2 MARCO chr2:119735404 3'AG 119735404 Downstream 58bp
chr2 119735461 119735461 1 + C G LUAD 119735460 + 119735440 119735480 41 GCGATGGGGGTCTCATTGGCCCAAAAGGGGAAACTGGAACT GCGATGGGGGTCTCATTGGCCGAAAAGGGGAAACTGGAACT < 41bp 0.399745201953321 0.724578878705234 0.11254063 0.25774798 prediction 0.449157757410468 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119735460 chr2:119735461 nonsynonymous SNV 0.159 4 22 hm5C_associated_SNPs_117609 0 0 0 0 2 MARCO chr2:119735511 5'GT 119735511 Upstream 51bp
chr5 147491381 147491381 1 + T C STAD 147491378 + 147491358 147491398 41 GTGAGGAATGGACGACTCCCCTGTACCAGAGAGAATGATCC GTGAGGAATGGACGACTCCCCTGCACCAGAGAGAATGATCC < 41bp 0.49798260151266 0.724577983585466 0.079334974 0.22184125 prediction 0.449155967170932 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147491378 chr5:147491381 synonymous SNV . 0 24 hm5C_associated_SNPs_117611 0 0 1 0 2 SPINK5 chr5:147491331 3'AG 147491331 Downstream 51bp
chr5 147491381 147491381 1 + T C STAD 147491378 + 147491358 147491398 41 GTGAGGAATGGACGACTCCCCTGTACCAGAGAGAATGATCC GTGAGGAATGGACGACTCCCCTGCACCAGAGAGAATGATCC < 41bp 0.49798260151266 0.724577983585466 0.079334974 0.22184125 prediction 0.449155967170932 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147491378 chr5:147491381 synonymous SNV . 0 24 hm5C_associated_SNPs_117611 0 0 1 0 2 SPINK5 chr5:147491458 5'GT 147491458 Upstream 78bp
chr1 241723980 241723980 1 + C A PRAD 241723979 + 241723959 241723999 41 CCTCAGCTGCTGAGAAATACCCCAATGTGAAAATGCACTTT CCTCAGCTGCTGAGAAATACCACAATGTGAAAATGCACTTT < 41bp 0.594684023059406 0.819252287511868 0.39726245 0.36374813 prediction 0.449136528904925 Functional Gain - KMO ENSG00000117009 CDS Human protein_coding chr1:241723979 chr1:241723980 nonsynonymous SNV 0.128 4 22 hm5C_associated_SNPs_117615 0 0 0 0 2 KMO chr1:241723965 3'AG 241723965 Downstream 16bp
chr1 241723980 241723980 1 + C A PRAD 241723979 + 241723959 241723999 41 CCTCAGCTGCTGAGAAATACCCCAATGTGAAAATGCACTTT CCTCAGCTGCTGAGAAATACCACAATGTGAAAATGCACTTT < 41bp 0.594684023059406 0.819252287511868 0.39726245 0.36374813 prediction 0.449136528904925 Functional Gain - KMO ENSG00000117009 CDS Human protein_coding chr1:241723979 chr1:241723980 nonsynonymous SNV 0.128 4 22 hm5C_associated_SNPs_117615 0 0 0 0 2 KMO chr1:241724052 5'GT 241724052 Upstream 73bp
chr7 23347497 23347497 1 + T C BLCA 23347495 + 23347475 23347515 41 GGCTTTTTGCAGTACAAACACCTGAAATGTAAACGTGACCC GGCTTTTTGCAGTACAAACACCCGAAATGTAAACGTGACCC < 41bp 0.450867630003485 0.724565493093014 0.08535546 0.05691749 prediction 0.449130986186029 Functional Gain - MALSU1 ENSG00000156928 CDS Human protein_coding chr7:23347495 chr7:23347497 nonsynonymous SNV 0.986 3 23 hm5C_associated_SNPs_117618 0 0 1 0 2 MALSU1 chr7:23347487 3'AG 23347487 Downstream 11bp
chr7 23347497 23347497 1 + T C BLCA 23347495 + 23347475 23347515 41 GGCTTTTTGCAGTACAAACACCTGAAATGTAAACGTGACCC GGCTTTTTGCAGTACAAACACCCGAAATGTAAACGTGACCC < 41bp 0.450867630003485 0.724565493093014 0.08535546 0.05691749 prediction 0.449130986186029 Functional Gain - MALSU1 ENSG00000156928 CDS Human protein_coding chr7:23347495 chr7:23347497 nonsynonymous SNV 0.986 3 23 hm5C_associated_SNPs_117618 0 0 1 0 2 MALSU1 chr7:23347568 5'GT 23347568 Upstream 72bp
chr19 1207178 1207178 1 + C G UCEC 1207177 + 1207157 1207197 41 AGAAGAAGTTGCGAAGGATCCCCAACGGGGAGGCCAACGTG AGAAGAAGTTGCGAAGGATCCGCAACGGGGAGGCCAACGTG < 41bp 0.416382317565801 0.72456194729512 0.112225235 0.086868554 prediction 0.44912389459024 Functional Gain - STK11 ENSG00000118046 CDS Human protein_coding chr19:1207177 chr19:1207178 nonsynonymous SNV 0.994 5 22 hm5C_associated_SNPs_117620 0 0 1 0 1 STK11 chr19:1207202 5'GT 1207202 Upstream 25bp
chr10 101122095 101122095 1 + C T COAD 101122094 + 101122074 101122114 41 ATGAGAAGAACAAGAAGGCCCCGGAACACTACCTCTACCAG ATGAGAAGAACAAGAAGGCCCTGGAACACTACCTCTACCAG < 41bp 0.5803193713926 0.804881237949079 0.6338061 0.34717748 prediction 0.449123733112958 Functional Gain - CNNM1 ENSG00000119946 CDS Human protein_coding chr10:101122094 chr10:101122095 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_117621 0 0 1 0 1 CNNM1 chr10:101122153 5'GT 101122153 Upstream 59bp
chr1 179782940 179782940 1 + C A LUAD 179782939 + 179782919 179782959 41 CTGCTGCAAGAAGAGCGGAACCGAGGTTGCAGACGAGGAGG CTGCTGCAAGAAGAGCGGAACAGAGGTTGCAGACGAGGAGG < 41bp 0.454445445643788 0.724558917730875 0.5536533 0.7848985 prediction 0.44911783546175 Functional Gain - FAM163A ENSG00000143340 CDS Human protein_coding chr1:179782939 chr1:179782940 synonymous SNV . 0 22 hm5C_associated_SNPs_117623 0 0 0 0 1 FAM163A chr1:179782914 3'AG 179782914 Downstream 27bp
chr11 63971066 63971066 1 + A G BLCA 63971063 + 63971043 63971083 41 CCATGCGCCTTATCCTGGAACAGATGCAGAAGGACCCCCAG CCATGCGCCTTATCCTGGAACAGGTGCAGAAGGACCCCCAG < 41bp 0.553933329399677 0.778491747018984 0.86758196 0.87975335 prediction 0.449116835238614 Functional Gain - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63971063 chr11:63971066 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_117624 0 0 1 0 1 STIP1 chr11:63971094 5'GT 63971094 Upstream 29bp
chr1 160133983 160133983 1 + C T rs147505669 160133982 + 160133962 160134002 41 TGTGATTGCTACGGGAGACTCCACAGTGATGGGCAGAATTG TGTGATTGCTACGGGAGACTCTACAGTGATGGGCAGAATTG < 41bp 0.496768000421043 0.724548244972248 0.87248576 0.9107449 prediction 0.449096489944496 Functional Gain - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160133982 chr1:160133983 synonymous SNV . 0 22 hm5C_associated_SNPs_117627 0 0 0 0 1 ATP1A4 chr1:160133946 3'AG 160133946 Downstream 38bp
chr3 167508323 167508323 1 + T C LGG 167508321 + 167508301 167508341 41 ATTTTAATGCAGCAGTAAATCATGTGGACTTCAGTCAAAAT ATTTTAATGCAGCAGTAAATCACGTGGACTTCAGTCAAAAT < 41bp 0.447963197257834 0.724544544654339 0.28683585 0.3560636 prediction 0.449089089308677 Functional Gain - SERPINI1 ENSG00000163536 CDS Human protein_coding chr3:167508321 chr3:167508323 synonymous SNV . 0 23 hm5C_associated_SNPs_117629 0 0 1 0 1 SERPINI1 chr3:167508390 5'GT 167508390 Upstream 68bp
chr7 142561786 142561786 1 + T C rs56300555 142561784 + 142561764 142561804 41 CTCGGACCTTTGAGGCATGTCATGTGGCAGGGGCCCCTCCA CTCGGACCTTTGAGGCATGTCACGTGGCAGGGGCCCCTCCA < 41bp 0.604289872169203 0.828823501996319 0.30049106 0.47557536 prediction 0.449067259654231 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142561784 chr7:142561786 synonymous SNV . 0 23 hm5C_associated_SNPs_117630 0 0 0 0 1 EPHB6 chr7:142561724 3'AG 142561724 Downstream 63bp
chr6 155131222 155131222 1 + C A THCA 155131218 + 155131198 155131238 41 AAACACAGAAAGCGATCACGCTCCCGCTCAAGAGAAAGAAA AAACACAGAAAGCGATCACGCTCCAGCTCAAGAGAAAGAAA < 41bp 0.287858814743859 0.724530186928886 0.07138169 0.084039986 prediction 0.449060373857772 Functional Gain - SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155131218 chr6:155131222 nonsynonymous SNV 0.970 1 25 hm5C_associated_SNPs_117631 0 0 0 0 1 SCAF8 chr6:155131149 3'AG 155131149 Downstream 74bp
chr1 40879859 40879859 1 + C A SKCM 40879855 + 40879835 40879875 41 AGAAAAAAGAAGACCCACAGCTACCTCGGAAAAGCTCCCCG AGAAAAAAGAAGACCCACAGCTACATCGGAAAAGCTCCCCG < 41bp 0.282558526045522 0.724526600065137 0.13802901 0.19200236 prediction 0.449053200130273 Functional Gain - SMAP2 ENSG00000084070 CDS Human protein_coding chr1:40879855 chr1:40879859 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_117633 0 0 1 0 2 SMAP2 chr1:40879831 3'AG 40879831 Downstream 29bp
chr1 40879859 40879859 1 + C A SKCM 40879855 + 40879835 40879875 41 AGAAAAAAGAAGACCCACAGCTACCTCGGAAAAGCTCCCCG AGAAAAAAGAAGACCCACAGCTACATCGGAAAAGCTCCCCG < 41bp 0.282558526045522 0.724526600065137 0.13802901 0.19200236 prediction 0.449053200130273 Functional Gain - SMAP2 ENSG00000084070 CDS Human protein_coding chr1:40879855 chr1:40879859 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_117633 0 0 1 0 2 SMAP2 chr1:40879912 5'GT 40879912 Upstream 54bp
chr11 71906438 71906438 1 + C A rs76191655 71906434 + 71906414 71906454 41 GGAGAGATGGCACCTGCCTGCAAACGGCATTTCATCCAGGA GGAGAGATGGCACCTGCCTGCAAAAGGCATTTCATCCAGGA < 41bp 0.306301428148217 0.724526009302975 0.2821328 0.28980616 prediction 0.44905201860595 Functional Gain - FOLR1 ENSG00000110195 CDS Human protein_coding chr11:71906434 chr11:71906438 synonymous SNV . 0 25 hm5C_associated_SNPs_117634 0 0 0 0 1 FOLR1 chr11:71906503 5'GT 71906503 Upstream 66bp
chr12 54922115 54922115 1 + A G UCEC 54922112 + 54922092 54922132 41 CAGGCCTTCGTCAGCCTGCCCAGAGAAGGGGAGCAGAACTT CAGGCCTTCGTCAGCCTGCCCAGGGAAGGGGAGCAGAACTT < 41bp 0.578208202533117 0.802731866532044 0.33497256 0.7118609 prediction 0.449047327997855 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54922112 chr12:54922115 synonymous SNV . 0 24 hm5C_associated_SNPs_117636 0 0 0 0 2 NCKAP1L chr12:54922031 3'AG 54922031 Downstream 85bp
chr12 54922115 54922115 1 + A G UCEC 54922112 + 54922092 54922132 41 CAGGCCTTCGTCAGCCTGCCCAGAGAAGGGGAGCAGAACTT CAGGCCTTCGTCAGCCTGCCCAGGGAAGGGGAGCAGAACTT < 41bp 0.578208202533117 0.802731866532044 0.33497256 0.7118609 prediction 0.449047327997855 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54922112 chr12:54922115 synonymous SNV . 0 24 hm5C_associated_SNPs_117636 0 0 0 0 2 NCKAP1L chr12:54922161 5'GT 54922161 Upstream 47bp
chr3 52825555 52825555 1 + T G CESC 52825552 + 52825532 52825572 41 GGGCAATTTTTCCACCCCATCGGTTTTGAAGTGTCTGACAT GGGCAATTTTTCCACCCCATCGGGTTTGAAGTGTCTGACAT < 41bp 0.321213831757887 0.724510440755367 0.06520128 0.774318 prediction 0.449020881510734 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52825552 chr3:52825555 synonymous SNV . 0 24 hm5C_associated_SNPs_117637 0 0 1 1 3 ITIH1 chr3:52825533 3'AG 52825533 Downstream 23bp
chr3 52825555 52825555 1 + T G CESC 52825552 + 52825532 52825572 41 GGGCAATTTTTCCACCCCATCGGTTTTGAAGTGTCTGACAT GGGCAATTTTTCCACCCCATCGGGTTTGAAGTGTCTGACAT < 41bp 0.321213831757887 0.724510440755367 0.06520128 0.774318 prediction 0.449020881510734 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52825552 chr3:52825555 synonymous SNV . 0 24 hm5C_associated_SNPs_117637 0 0 1 1 3 ITIH1 chr3:52825615 5'GT 52825615 Upstream 61bp
chr3 52825555 52825555 1 + T G CESC 52825552 + 52825532 52825572 41 GGGCAATTTTTCCACCCCATCGGTTTTGAAGTGTCTGACAT GGGCAATTTTTCCACCCCATCGGGTTTGAAGTGTCTGACAT < 41bp 0.321213831757887 0.724510440755367 0.06520128 0.774318 prediction 0.449020881510734 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52825552 chr3:52825555 synonymous SNV . 0 24 hm5C_associated_SNPs_117637 0 0 1 1 3 ITIH1 chr3:52825644 5'GT 52825644 Upstream 90bp
chr14 101124004 101124004 1 + C A rs146966250 101124000 + 101123980 101124020 41 CCAAAGTGACTTGGAGCCAACTGCCGGAAAGGCCATGCCCT CCAAAGTGACTTGGAGCCAACTGCAGGAAAGGCCATGCCCT < 41bp 0.357145614014067 0.724504742909287 0.2473534 0.53607595 prediction 0.449009485818574 Functional Gain - LINC00523 ENSG00000196273 ncRNA_exonic Human lincRNA chr14:101124000 chr14:101124004 . . 0 25 hm5C_associated_SNPs_117641 0 0 0 0 1 LINC00523 chr14:101124047 5'GT 101124047 Upstream 44bp
chr5 137734049 137734049 1 + A G LUSC 137734046 + 137734026 137734066 41 GTTCTGCCAGCTCGTAATGTCTGAGAAGGAGGCCATGATGA GTTCTGCCAGCTCGTAATGTCTGGGAAGGAGGCCATGATGA < 41bp 0.560406077018482 0.784909697917592 0.22158667 0.43433756 prediction 0.449007241798221 Functional Gain - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137734046 chr5:137734049 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_117643 0 0 1 0 1 KDM3B chr5:137734081 5'GT 137734081 Upstream 33bp
chrX 130215754 130215754 1 + C A UCEC 130215753 + 130215733 130215773 41 GTGAGTGTCTTGGGAGGAGCCCCAGGACACAACCCCGACCG GTGAGTGTCTTGGGAGGAGCCACAGGACACAACCCCGACCG < 41bp 0.601173291027566 0.825671412991431 0.6061181 0.5681853 prediction 0.448996243927731 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130215753 chrX:130215754 nonsynonymous SNV 0.924 3 22 hm5C_associated_SNPs_117644 0 0 0 0 1 ARHGAP36 chrX:130215734 3'AG 130215734 Downstream 21bp
chr7 27209313 27209313 1 + C A rs375498839 27209309 + 27209289 27209329 41 CCCAGCCCCTAGGCAACCTGCGCCCGCCAGTGCAACAGAGT CCCAGCCCCTAGGCAACCTGCGCCAGCCAGTGCAACAGAGT < 41bp 0.335259277569868 0.724495087696584 0.17565161 0.5372388 prediction 0.448990175393167 Functional Gain - HOXA10-AS ENSG00000253187 ncRNA_exonic Human antisense chr7:27209309 chr7:27209313 . . 0 25 hm5C_associated_SNPs_117646 0 0 0 0 1 HOXA10-AS chr7:27209383 5'GT 27209383 Upstream 71bp
chr13 48615171 48615171 1 + T G COAD 48615168 + 48615148 48615188 41 TCATTGAGAAGGAGAATTACCATTATGTTACTATATTAATG TCATTGAGAAGGAGAATTACCATGATGTTACTATATTAATG < 41bp 0.351086131253386 0.724492515215983 0.03746292 0.12241772 prediction 0.448985030431965 Functional Gain - NUDT15 ENSG00000136159 CDS Human protein_coding chr13:48615168 chr13:48615171 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_117647 0 0 1 0 1 NUDT15 chr13:48615252 5'GT 48615252 Upstream 82bp
chr19 15739240 15739240 1 + C A UCEC 15739239 + 15739219 15739259 41 TCCCAGACAGCCGAGTCATCCCCAAAGGTGCCCTCCATGGC TCCCAGACAGCCGAGTCATCCACAAAGGTGCCCTCCATGGC < 41bp 0.550456061494309 0.774946836383779 0.18737921 0.13449508 prediction 0.44898154977894 Functional Gain - CYP4F8 ENSG00000186526 ncRNA_exonic Human protein_coding chr19:15739239 chr19:15739240 . 0.960 2 22 hm5C_associated_SNPs_117648 0 0 0 0 1 CYP4F8 chr19:15739245 5'GT 15739245 Upstream 6bp
chr10 97697770 97697770 1 + C T UCEC 97697769 + 97697749 97697789 41 GACCAGTAAACCGTAGTTATCCCAAATGCTTTTCACTTGGT GACCAGTAAACCGTAGTTATCTCAAATGCTTTTCACTTGGT < 41bp 0.490021905430596 0.724489711481555 0.1936953 0.3326929 prediction 0.448979422963111 Functional Gain - CC2D2B ENSG00000173088 CDS Human other chr10:97697769 chr10:97697770 nonsynonymous SNV 0.013 0 22 hm5C_associated_SNPs_117649 0 0 0 0 1 CC2D2B chr10:97697748 3'AG 97697748 Downstream 23bp
chr10 3162215 3162215 1 + C G rs12572717 3162214 + 3162194 3162234 41 TTTCAGCATCGGGGCAGACACCGCCCTGAACACTATCACCG TTTCAGCATCGGGGCAGACACGGCCCTGAACACTATCACCG < 41bp 0.400091948729483 0.724484861672117 0.1951901 0.6946865 prediction 0.448969723344234 Functional Gain - PFKP ENSG00000067057 CDS Human protein_coding chr10:3162214 chr10:3162215 synonymous SNV . 0 22 hm5C_associated_SNPs_117651 0 0 1 0 1 PFKP chr10:3162236 5'GT 3162236 Upstream 22bp
chr17 79031757 79031757 1 + C T SKCM 79031756 + 79031736 79031776 41 GGCCAGCGAGAGCCAGGGCTCCAAAGAACTCGGTGAGACCC GGCCAGCGAGAGCCAGGGCTCTAAAGAACTCGGTGAGACCC < 41bp 0.506701055860906 0.731181347461547 0.6352933 0.5275254 prediction 0.448960583201282 Functional Gain - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79031756 chr17:79031757 synonymous SNV . 0 22 hm5C_associated_SNPs_117652 0 0 0 0 2 BAIAP2 chr17:79031681 3'AG 79031681 Downstream 77bp
chr17 79031757 79031757 1 + C T SKCM 79031756 + 79031736 79031776 41 GGCCAGCGAGAGCCAGGGCTCCAAAGAACTCGGTGAGACCC GGCCAGCGAGAGCCAGGGCTCTAAAGAACTCGGTGAGACCC < 41bp 0.506701055860906 0.731181347461547 0.6352933 0.5275254 prediction 0.448960583201282 Functional Gain - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79031756 chr17:79031757 synonymous SNV . 0 22 hm5C_associated_SNPs_117652 0 0 0 0 2 BAIAP2 chr17:79031767 5'GT 79031767 Upstream 11bp
chr17 56272453 56272453 1 + C T SKCM 56272452 + 56272432 56272472 41 CCTGGACTTCTCCCCGGAGTCCCCGGCCAGAGTGGCCTTCA CCTGGACTTCTCCCCGGAGTCTCCGGCCAGAGTGGCCTTCA < 41bp 0.588706766572774 0.813185558355886 0.36851987 0.81606865 prediction 0.448957583566225 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56272452 chr17:56272453 synonymous SNV . 0 22 hm5C_associated_SNPs_117653 0 0 0 0 1 EPX chr17:56272531 5'GT 56272531 Upstream 79bp
chr17 78195416 78195416 1 + C T SKCM 78195415 + 78195395 78195435 41 GTCCTCTGGCCCCGGGATGGCCCCGAGCGCCTGCTGCTGCT GTCCTCTGGCCCCGGGATGGCTCCGAGCGCCTGCTGCTGCT < 41bp 0.568709989624884 0.793186403376523 0.42522192 0.5631813 prediction 0.448952827503279 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78195415 chr17:78195416 synonymous SNV . 0 22 hm5C_associated_SNPs_117654 0 0 1 0 1 SLC26A11 chr17:78195347 3'AG 78195347 Downstream 70bp
chr17 56280595 56280595 1 + A G COAD 56280592 + 56280572 56280612 41 CATCTGGATTGGGGCCATCGCTGAGCCTCTTTTGCCGGGGG CATCTGGATTGGGGCCATCGCTGGGCCTCTTTTGCCGGGGG < 41bp 0.554829523632687 0.779304889462003 0.7527971 0.9269264 prediction 0.448950731658633 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56280592 chr17:56280595 nonsynonymous SNV 0.774 5 24 hm5C_associated_SNPs_117655 0 0 0 0 1 EPX chr17:56280679 5'GT 56280679 Upstream 85bp
chrX 140995973 140995973 1 + C A UCEC 140995969 + 140995949 140995989 41 TCCTCAAATATCAAGTGAAGCAGCCTATCACAAAGGCAGAG TCCTCAAATATCAAGTGAAGCAGCATATCACAAAGGCAGAG < 41bp 0.32786800530843 0.724473890330029 0.057813704 0.08888778 prediction 0.448947780660058 Functional Gain - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140995969 chrX:140995973 nonsynonymous SNV 0.004 3 25 hm5C_associated_SNPs_117658 0 0 0 0 1 MAGEC1 chrX:140995876 3'AG 140995876 Downstream 98bp
chr2 242265433 242265433 1 + C T SKCM 242265432 + 242265412 242265452 41 AGCCAACTCAGTTTATAAATCCAGAAACACCTGGCTATGTT AGCCAACTCAGTTTATAAATCTAGAAACACCTGGCTATGTT < 41bp 0.467248898117409 0.724460968169541 0.3054345 0.35876015 prediction 0.448921936339081 Functional Gain - SEPT2 ENSG00000168385 CDS Human protein_coding chr2:242265432 chr2:242265433 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_117666 0 0 1 0 2 SEPT2 chr2:242265408 3'AG 242265408 Downstream 26bp
chr2 242265433 242265433 1 + C T SKCM 242265432 + 242265412 242265452 41 AGCCAACTCAGTTTATAAATCCAGAAACACCTGGCTATGTT AGCCAACTCAGTTTATAAATCTAGAAACACCTGGCTATGTT < 41bp 0.467248898117409 0.724460968169541 0.3054345 0.35876015 prediction 0.448921936339081 Functional Gain - SEPT2 ENSG00000168385 CDS Human protein_coding chr2:242265432 chr2:242265433 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_117666 0 0 1 0 2 SEPT2 chr2:242265528 5'GT 242265528 Upstream 96bp
chr19 12014765 12014765 1 + C A COAD 12014764 + 12014744 12014784 41 TTGAATATGAGTACCAAAACCCCAGGAGAAACTTCAGGTAA TTGAATATGAGTACCAAAACCACAGGAGAAACTTCAGGTAA < 41bp 0.474083936934131 0.724458698807129 0.2380223 0.5034495 prediction 0.448917397614257 Functional Gain - ZNF69 ENSG00000198429 CDS Human protein_coding chr19:12014764 chr19:12014765 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_117669 0 0 0 0 2 ZNF69 chr19:12014720 3'AG 12014720 Downstream 46bp
chr19 12014765 12014765 1 + C A COAD 12014764 + 12014744 12014784 41 TTGAATATGAGTACCAAAACCCCAGGAGAAACTTCAGGTAA TTGAATATGAGTACCAAAACCACAGGAGAAACTTCAGGTAA < 41bp 0.474083936934131 0.724458698807129 0.2380223 0.5034495 prediction 0.448917397614257 Functional Gain - ZNF69 ENSG00000198429 CDS Human protein_coding chr19:12014764 chr19:12014765 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_117669 0 0 0 0 2 ZNF69 chr19:12014780 5'GT 12014780 Upstream 16bp
chr11 43923096 43923096 1 + C T rs2271815 43923095 + 43923075 43923115 41 GTGCTGCGCACACTAAAGAACCGCATTGAAGAGAACACTGG GTGCTGCGCACACTAAAGAACTGCATTGAAGAGAACACTGG < 41bp 0.584599334133259 0.809053795854827 0.023096949 0.06382054 prediction 0.448908923443136 Functional Gain - ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43923095 chr11:43923096 nonsynonymous SNV 0.714 2 22 hm5C_associated_SNPs_117670 0 0 1 2 1 ALKBH3 chr11:43923066 3'AG 43923066 Downstream 31bp
chr11 34938280 34938280 1 + A G LUSC 34938277 + 34938257 34938297 41 GGCTTCCCCGGCCGCCGAAGCGTAGGGCTGGTGAAGGGGGC GGCTTCCCCGGCCGCCGAAGCGTGGGGCTGGTGAAGGGGGC < 41bp 0.572914980320443 0.79736921848269 0.8101293 0.9074571 prediction 0.448908476324494 Functional Gain - PDHX ENSG00000110435 CDS Human protein_coding chr11:34938277 chr11:34938280 synonymous SNV . 0 24 hm5C_associated_SNPs_117671 0 0 1 0 1 PDHX chr11:34938362 5'GT 34938362 Upstream 83bp
chr10 89487056 89487056 1 + T C UCEC 89487054 + 89487034 89487074 41 TCCACAGATGGCGTGATCAACATGAGCATCCCCATTGTACT TCCACAGATGGCGTGATCAACACGAGCATCCCCATTGTACT < 41bp 0.621320950618695 0.845768289895722 0.605421 0.8593176 prediction 0.448894678554054 Functional Gain - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89487054 chr10:89487056 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_117673 0 0 0 0 1 PAPSS2 chr10:89487041 3'AG 89487041 Downstream 16bp
chr3 52831908 52831908 1 + C A UCEC 52831907 + 52831887 52831927 41 TCTTTCATCACCAACGACCTCCTGGGAAGCGCCCTCACCAA TCTTTCATCACCAACGACCTCATGGGAAGCGCCCTCACCAA < 41bp 0.452425214683758 0.724445333548698 0.60495985 0.46257293 prediction 0.448890667097396 Functional Gain - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52831907 chr3:52831908 nonsynonymous SNV 0.939 1 22 hm5C_associated_SNPs_117675 0 0 1 0 2 ITIH3 chr3:52831833 3'AG 52831833 Downstream 76bp
chr3 52831908 52831908 1 + C A UCEC 52831907 + 52831887 52831927 41 TCTTTCATCACCAACGACCTCCTGGGAAGCGCCCTCACCAA TCTTTCATCACCAACGACCTCATGGGAAGCGCCCTCACCAA < 41bp 0.452425214683758 0.724445333548698 0.60495985 0.46257293 prediction 0.448890667097396 Functional Gain - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52831907 chr3:52831908 nonsynonymous SNV 0.939 1 22 hm5C_associated_SNPs_117675 0 0 1 0 2 ITIH3 chr3:52831946 5'GT 52831946 Upstream 39bp
chr22 24916379 24916379 1 + C T LUSC 24916378 + 24916358 24916398 41 GTCCCTGTGGCCCATCGAGGCCAGAAACGCAGCCATTGCCA GTCCCTGTGGCCCATCGAGGCTAGAAACGCAGCCATTGCCA < 41bp 0.575856968346949 0.800289221351155 0.1512444 0.16534588 prediction 0.448864506008412 Functional Gain - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24916378 chr22:24916379 synonymous SNV . 0 22 hm5C_associated_SNPs_117683 0 0 0 0 2 UPB1 chr22:24916355 3'AG 24916355 Downstream 25bp
chr22 24916379 24916379 1 + C T LUSC 24916378 + 24916358 24916398 41 GTCCCTGTGGCCCATCGAGGCCAGAAACGCAGCCATTGCCA GTCCCTGTGGCCCATCGAGGCTAGAAACGCAGCCATTGCCA < 41bp 0.575856968346949 0.800289221351155 0.1512444 0.16534588 prediction 0.448864506008412 Functional Gain - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24916378 chr22:24916379 synonymous SNV . 0 22 hm5C_associated_SNPs_117683 0 0 0 0 2 UPB1 chr22:24916436 5'GT 24916436 Upstream 58bp
chr1 9019027 9019027 1 + C T COAD 9019026 + 9019006 9019046 41 ATGATATAGCCCAAGATGCGCCGGATGGTTTGGCTGTACTG ATGATATAGCCCAAGATGCGCTGGATGGTTTGGCTGTACTG < 41bp 0.552650300609634 0.77707125035418 0.45986506 0.32281992 prediction 0.448841899489092 Functional Gain - CA6 ENSG00000131686 CDS Human protein_coding chr1:9019026 chr1:9019027 nonsynonymous SNV 0.000 3 22 hm5C_associated_SNPs_117687 0 0 0 0 2 CA6 chr1:9018969 3'AG 9018969 Downstream 59bp
chr1 9019027 9019027 1 + C T COAD 9019026 + 9019006 9019046 41 ATGATATAGCCCAAGATGCGCCGGATGGTTTGGCTGTACTG ATGATATAGCCCAAGATGCGCTGGATGGTTTGGCTGTACTG < 41bp 0.552650300609634 0.77707125035418 0.45986506 0.32281992 prediction 0.448841899489092 Functional Gain - CA6 ENSG00000131686 CDS Human protein_coding chr1:9019026 chr1:9019027 nonsynonymous SNV 0.000 3 22 hm5C_associated_SNPs_117687 0 0 0 0 2 CA6 chr1:9019061 5'GT 9019061 Upstream 35bp
chr12 109939243 109939243 1 + A G CESC 109939240 + 109939220 109939260 41 TGTGGGGGGTGCCTCTGATCCGGATCTTCTTCTGTGACATC TGTGGGGGGTGCCTCTGATCCGGGTCTTCTTCTGTGACATC < 41bp 0.544986177679331 0.76940573816734 0.76719004 0.8821502 prediction 0.448839120976018 Functional Gain - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109939240 chr12:109939243 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_117688 0 0 0 0 1 UBE3B chr12:109939176 3'AG 109939176 Downstream 68bp
chr11 82625064 82625064 1 + C T rs184390937 82625063 + 82625043 82625083 41 ATCTCGGCTCACTGCAACCTCCGCATCCTAGGTTCAAGCAA ATCTCGGCTCACTGCAACCTCTGCATCCTAGGTTCAAGCAA < 41bp 0.521314534916823 0.745729743528487 0.14537817 0.23786712 prediction 0.448830417223328 Functional Gain - DDIAS ENSG00000165490 CDS Human protein_coding chr11:82625063 chr11:82625064 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_117689 0 0 0 0 1 DDIAS chr11:82624999 3'AG 82624999 Downstream 66bp
chr1 40758188 40758188 1 + T C UCEC 40758186 + 40758166 40758206 41 CTGATGCATTTGCCAAGAAACTTGGGAAGGCTAAAGACTTA CTGATGCATTTGCCAAGAAACTCGGGAAGGCTAAAGACTTA < 41bp 0.604580432962978 0.828993345298105 0.31260502 0.13594073 prediction 0.448825824670254 Functional Gain - ZMPSTE24 ENSG00000084073 CDS Human protein_coding chr1:40758186 chr1:40758188 synonymous SNV . 0 23 hm5C_associated_SNPs_117690 0 0 1 0 1 ZMPSTE24 chr1:40758117 3'AG 40758117 Downstream 72bp
chr17 5984402 5984402 1 + C T UCEC 5984401 + 5984381 5984421 41 GCCAGGCCCGCCATCCACAGCCGAGGTAGGCGCTCAGCTGC GCCAGGCCCGCCATCCACAGCTGAGGTAGGCGCTCAGCTGC < 41bp 0.519540970587536 0.743952835835918 0.9206902 0.86458206 prediction 0.448823730496763 Functional Gain - WSCD1 ENSG00000179314 CDS Human protein_coding chr17:5984401 chr17:5984402 stopgain 0.328 0 22 hm5C_associated_SNPs_117692 0 0 0 0 1 WSCD1 chr17:5984405 5'GT 5984405 Upstream 4bp
chr16 29857518 29857518 1 + C T rs139422591 29857517 + 29857497 29857537 41 CGGGACTGCCAAGGCGGAGGCCGAGTCCCGTGCGGAGGCAG CGGGACTGCCAAGGCGGAGGCTGAGTCCCGTGCGGAGGCAG < 41bp 0.482979344820492 0.724410135008719 0.8229668 0.8753733 prediction 0.448820270017437 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29857517 chr16:29857518 synonymous SNV . 0 22 hm5C_associated_SNPs_117694 0 0 1 0 2 MVP chr16:29857479 3'AG 29857479 Downstream 40bp
chr16 29857518 29857518 1 + C T rs139422591 29857517 + 29857497 29857537 41 CGGGACTGCCAAGGCGGAGGCCGAGTCCCGTGCGGAGGCAG CGGGACTGCCAAGGCGGAGGCTGAGTCCCGTGCGGAGGCAG < 41bp 0.482979344820492 0.724410135008719 0.8229668 0.8753733 prediction 0.448820270017437 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29857517 chr16:29857518 synonymous SNV . 0 22 hm5C_associated_SNPs_117694 0 0 1 0 2 MVP chr16:29857605 5'GT 29857605 Upstream 88bp
chr11 12278391 12278391 1 + T C UCEC 12278388 + 12278368 12278408 41 GGCAGCGACACGTGTTACTTCTGTAAGAAACGTGTGTACGT GGCAGCGACACGTGTTACTTCTGCAAGAAACGTGTGTACGT < 41bp 0.524044288131607 0.748454072415243 0.38420457 0.3592111 prediction 0.448819568567272 Functional Gain - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12278388 chr11:12278391 synonymous SNV . 0 24 hm5C_associated_SNPs_117695 0 0 1 0 1 MICAL2 chr11:12278332 3'AG 12278332 Downstream 60bp
chr1 158151864 158151864 1 + C A UCEC 158151860 + 158151840 158151880 41 TGTCCGCTGGCTGTGAGGTGCACCCTGGGAACGCCTCAAAT TGTCCGCTGGCTGTGAGGTGCACCATGGGAACGCCTCAAAT < 41bp 0.295619715808309 0.724406412845844 0.0015302002 0.0025747418 prediction 0.448812825691688 Functional Gain - CD1D ENSG00000158473 CDS Human protein_coding chr1:158151860 chr1:158151864 nonsynonymous SNV 0.009 1 25 hm5C_associated_SNPs_117697 0 0 0 0 1 CD1D chr1:158151822 3'AG 158151822 Downstream 43bp
chr9 101570336 101570336 1 + A G rs1137654 101570333 + 101570313 101570353 41 CTCACTGCACCGCCGCCTGCCCGAGCGCTGGAACCCGCTGT CTCACTGCACCGCCGCCTGCCCGGGCGCTGGAACCCGCTGT < 41bp 0.473457620551243 0.72440579272219 0.044829607 0.122861296 prediction 0.448811585444381 Functional Gain - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101570333 chr9:101570336 nonsynonymous SNV 0.992 2 24 hm5C_associated_SNPs_117698 0 0 0 0 1 GALNT12 chr9:101570351 5'GT 101570351 Upstream 16bp
chr1 43773165 43773165 1 + C A LUAD 43773164 + 43773144 43773184 41 TGCCCAGGCATATCAGGCTGCCGGGGCCTCACCTTCTGCCT TGCCCAGGCATATCAGGCTGCAGGGGCCTCACCTTCTGCCT < 41bp 0.586824971041708 0.811217119592538 0.9314985 0.9300703 prediction 0.448784297101659 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43773164 chr1:43773165 synonymous SNV . 0 22 hm5C_associated_SNPs_117701 0 0 0 0 2 TIE1 chr1:43773103 3'AG 43773103 Downstream 63bp
chr1 43773165 43773165 1 + C A LUAD 43773164 + 43773144 43773184 41 TGCCCAGGCATATCAGGCTGCCGGGGCCTCACCTTCTGCCT TGCCCAGGCATATCAGGCTGCAGGGGCCTCACCTTCTGCCT < 41bp 0.586824971041708 0.811217119592538 0.9314985 0.9300703 prediction 0.448784297101659 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43773164 chr1:43773165 synonymous SNV . 0 22 hm5C_associated_SNPs_117701 0 0 0 0 2 TIE1 chr1:43773243 5'GT 43773243 Upstream 79bp
chr17 62076363 62076363 1 + A G UCEC 62076360 + 62076340 62076380 41 TGATGATGCTGCAGAACGCGCAGATGCACCAGCTGCTGCTG TGATGATGCTGCAGAACGCGCAGGTGCACCAGCTGCTGCTG < 41bp 0.581369931626471 0.805761559864674 0.87722063 0.90182215 prediction 0.448783256476406 Functional Gain - PRR29 ENSG00000224383 CDS Human protein_coding chr17:62076360 chr17:62076363 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_117703 0 0 0 0 2 PRR29 chr17:62076328 3'AG 62076328 Downstream 36bp
chr17 62076363 62076363 1 + A G UCEC 62076360 + 62076340 62076380 41 TGATGATGCTGCAGAACGCGCAGATGCACCAGCTGCTGCTG TGATGATGCTGCAGAACGCGCAGGTGCACCAGCTGCTGCTG < 41bp 0.581369931626471 0.805761559864674 0.87722063 0.90182215 prediction 0.448783256476406 Functional Gain - PRR29 ENSG00000224383 CDS Human protein_coding chr17:62076360 chr17:62076363 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_117703 0 0 0 0 2 PRR29 chr17:62076434 5'GT 62076434 Upstream 72bp
chr11 34988314 34988314 1 + C T COAD 34988313 + 34988293 34988333 41 ACAGCTGGACCATCTTATCCCCGGCCTGTGATCCCACCAGT ACAGCTGGACCATCTTATCCCTGGCCTGTGATCCCACCAGT < 41bp 0.477473164554498 0.724386686135825 0.2570846 0.22133106 prediction 0.44877337227165 Functional Gain - PDHX ENSG00000110435 CDS Human protein_coding chr11:34988313 chr11:34988314 nonsynonymous SNV 0.020 4 22 hm5C_associated_SNPs_117708 0 0 1 0 1 PDHX chr11:34988361 5'GT 34988361 Upstream 48bp
chrX 153678642 153678642 1 + C A LUAD 153678641 + 153678621 153678661 41 GCCGCTGGGAACCCTACGACCCTGAAAAGAAGTGGGACAAG GCCGCTGGGAACCCTACGACCATGAAAAGAAGTGGGACAAG < 41bp 0.584350343274613 0.808733521622792 0.065503985 0.26904556 prediction 0.448766356696357 Functional Gain - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153678641 chrX:153678642 nonsynonymous SNV 0.164 4 22 hm5C_associated_SNPs_117711 0 0 1 0 2 FAM50A chrX:153678557 3'AG 153678557 Downstream 86bp
chrX 153678642 153678642 1 + C A LUAD 153678641 + 153678621 153678661 41 GCCGCTGGGAACCCTACGACCCTGAAAAGAAGTGGGACAAG GCCGCTGGGAACCCTACGACCATGAAAAGAAGTGGGACAAG < 41bp 0.584350343274613 0.808733521622792 0.065503985 0.26904556 prediction 0.448766356696357 Functional Gain - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153678641 chrX:153678642 nonsynonymous SNV 0.164 4 22 hm5C_associated_SNPs_117711 0 0 1 0 2 FAM50A chrX:153678667 5'GT 153678667 Upstream 26bp
chr17 27067964 27067964 1 + A G UCEC 27067961 + 27067941 27067981 41 CCCTGGACCAGGAGCCTCTGCTGAGTATAGACCTGGGCACT CCCTGGACCAGGAGCCTCTGCTGGGTATAGACCTGGGCACT < 41bp 0.572279338986685 0.796662234170505 0.8000039 0.91325265 prediction 0.44876579036764 Functional Gain - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27067961 chr17:27067964 nonsynonymous SNV 0.932 1 24 hm5C_associated_SNPs_117712 0 0 1 0 1 NEK8 chr17:27068003 5'GT 27068003 Upstream 40bp
chr11 120837915 120837915 1 + C T STAD 120837914 + 120837894 120837934 41 ACCCCCGCAGGCTCGGTTTTCCGGGACGAGTTTGATCTGGC ACCCCCGCAGGCTCGGTTTTCTGGGACGAGTTTGATCTGGC < 41bp 0.489275743030414 0.724382378402533 0.9246086 0.9147011 prediction 0.448764756805067 Functional Gain - GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120837914 chr11:120837915 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_117713 0 0 0 0 1 GRIK4 chr11:120837904 3'AG 120837904 Downstream 12bp
chr1 150482593 150482593 1 + C A STAD 150482592 + 150482572 150482612 41 TTGCAGTGGGTCCCCCTCTCCCTCAGGAAGCTGTCCCCCTC TTGCAGTGGGTCCCCCTCTCCATCAGGAAGCTGTCCCCCTC < 41bp 0.480486948186182 0.724368811474375 0.14923131 0.16460145 prediction 0.448737622948749 Functional Gain - ECM1 ENSG00000143369 CDS Human protein_coding chr1:150482592 chr1:150482593 nonsynonymous SNV 0.543 3 22 hm5C_associated_SNPs_117718 0 0 0 0 2 ECM1 chr1:150482578 3'AG 150482578 Downstream 16bp
chr1 150482593 150482593 1 + C A STAD 150482592 + 150482572 150482612 41 TTGCAGTGGGTCCCCCTCTCCCTCAGGAAGCTGTCCCCCTC TTGCAGTGGGTCCCCCTCTCCATCAGGAAGCTGTCCCCCTC < 41bp 0.480486948186182 0.724368811474375 0.14923131 0.16460145 prediction 0.448737622948749 Functional Gain - ECM1 ENSG00000143369 CDS Human protein_coding chr1:150482592 chr1:150482593 nonsynonymous SNV 0.543 3 22 hm5C_associated_SNPs_117718 0 0 0 0 2 ECM1 chr1:150482658 5'GT 150482658 Upstream 66bp
chr12 6575152 6575152 1 - T C ACC 6575155 - 6575135 6575175 41 CCTCCTCAGGTGGTGGACATCATACGTGTGAACGTGGACAA CCTCCTCAGGTGGTGGACATCATGCGTGTGAACGTGGACAA < 41bp 0.490609386602271 0.724363577736452 0.059678644 0.06584096 prediction 0.448727155472905 Functional Gain - VAMP1 ENSG00000139190 CDS Human protein_coding chr12:6575155 chr12:6575152 nonsynonymous SNV 0.991 0 24 hm5C_associated_SNPs_117721 0 0 1 0 1 VAMP1 chr12:6575166 3'AG 6575166 Downstream 15bp
chr17 42232288 42232288 1 + A G HNSC 42232285 + 42232265 42232305 41 CAGAATGAGCTGAAGCCTGGCTCAGTGCTGCTGCTGAAGCA CAGAATGAGCTGAAGCCTGGCTCGGTGCTGCTGCTGAAGCA < 41bp 0.478355754453621 0.724342901240545 0.24869049 0.15830621 prediction 0.44868580248109 Functional Gain - C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42232285 chr17:42232288 synonymous SNV . 0 24 hm5C_associated_SNPs_117726 0 0 0 0 2 C17orf53 chr17:42232221 3'AG 42232221 Downstream 68bp
chr17 42232288 42232288 1 + A G HNSC 42232285 + 42232265 42232305 41 CAGAATGAGCTGAAGCCTGGCTCAGTGCTGCTGCTGAAGCA CAGAATGAGCTGAAGCCTGGCTCGGTGCTGCTGCTGAAGCA < 41bp 0.478355754453621 0.724342901240545 0.24869049 0.15830621 prediction 0.44868580248109 Functional Gain - C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42232285 chr17:42232288 synonymous SNV . 0 24 hm5C_associated_SNPs_117726 0 0 0 0 2 C17orf53 chr17:42232306 5'GT 42232306 Upstream 19bp
chrX 67943846 67943846 1 + C T CESC 67943845 + 67943825 67943865 41 TTGTCTCCCAGTCCCTGGATCCGGAACAACCTGTGCCAGAG TTGTCTCCCAGTCCCTGGATCTGGAACAACCTGTGCCAGAG < 41bp 0.58453158575989 0.808874157998662 0.72613156 0.6125893 prediction 0.448685144477543 Functional Gain - STARD8 ENSG00000130052 CDS Human protein_coding chrX:67943845 chrX:67943846 nonsynonymous SNV 0.931 1 22 hm5C_associated_SNPs_117727 0 0 1 0 1 STARD8 chrX:67943787 3'AG 67943787 Downstream 60bp
chr19 45974102 45974102 1 + T G OV 45974099 + 45974079 45974119 41 CCAGGCATGAGTGGCTACAGCAGTGGCGGAGCGAGTGGCAG CCAGGCATGAGTGGCTACAGCAGGGGCGGAGCGAGTGGCAG < 41bp 0.709784301384187 0.934121823024285 0.81426764 0.91641724 prediction 0.448675043280194 Functional Gain - FOSB ENSG00000125740 CDS Human protein_coding chr19:45974099 chr19:45974102 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_117730 0 0 0 0 1 FOSB chr19:45974004 3'AG 45974004 Downstream 99bp
chr2 86344204 86344204 1 + C T SKCM 86344203 + 86344183 86344223 41 ATTTTTACTGGCAAAGAAATCCGGGGAGAATGTGGCCAAGT ATTTTTACTGGCAAAGAAATCTGGGGAGAATGTGGCCAAGT < 41bp 0.503032643906944 0.727365141636653 0.8700568 0.40002066 prediction 0.448664995459418 Functional Gain - PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86344203 chr2:86344204 synonymous SNV . 0 22 hm5C_associated_SNPs_117731 0 0 1 2 1 PTCD3 chr2:86344282 5'GT 86344282 Upstream 79bp
chr11 89392875 89392875 1 + C G LUAD 89392874 + 89392854 89392894 41 GTGCAGGAGACCCTCTCACACCAGGTTACCCAGCAAATGGT GTGCAGGAGACCCTCTCACACGAGGTTACCCAGCAAATGGT < 41bp 0.488984383448578 0.724330027790442 0.32314593 0.8781347 prediction 0.448660055580885 Functional Gain - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89392874 chr11:89392875 . . 0 22 hm5C_associated_SNPs_117733 0 0 0 0 1 FOLH1B chr11:89392892 5'GT 89392892 Upstream 18bp
chr19 50985202 50985202 1 + T C STAD 50985200 + 50985180 50985220 41 CGCGCCACCGCCACAGGAGGCCTGAGTGAGGACCGAGACCC CGCGCCACCGCCACAGGAGGCCCGAGTGAGGACCGAGACCC < 41bp 0.559578807086728 0.78390432306782 0.5854744 0.56180775 prediction 0.448651031962183 Functional Gain - EMC10 ENSG00000161671 CDS Human protein_coding chr19:50985200 chr19:50985202 stoploss 0.994 0 23 hm5C_associated_SNPs_117736 0 0 0 0 2 EMC10 chr19:50985118 3'AG 50985118 Downstream 85bp
chr19 50985202 50985202 1 + T C STAD 50985200 + 50985180 50985220 41 CGCGCCACCGCCACAGGAGGCCTGAGTGAGGACCGAGACCC CGCGCCACCGCCACAGGAGGCCCGAGTGAGGACCGAGACCC < 41bp 0.559578807086728 0.78390432306782 0.5854744 0.56180775 prediction 0.448651031962183 Functional Gain - EMC10 ENSG00000161671 CDS Human protein_coding chr19:50985200 chr19:50985202 stoploss 0.994 0 23 hm5C_associated_SNPs_117736 0 0 0 0 2 EMC10 chr19:50985204 5'GT 50985204 Upstream 3bp
chr11 45950253 45950253 1 + C T HNSC 45950252 + 45950232 45950272 41 GCTCCAAGCCTGGACATCTCCCGCTTCCGCTCCAGCCCCAC GCTCCAAGCCTGGACATCTCCTGCTTCCGCTCCAGCCCCAC < 41bp 0.556117457142171 0.780435897192552 0.059143245 0.10280338 prediction 0.448636880100761 Functional Gain - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45950252 chr11:45950253 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_117738 0 0 1 0 1 LARGE2 chr11:45950181 3'AG 45950181 Downstream 73bp
chr1 20674813 20674813 1 + C T COAD 20674812 + 20674792 20674832 41 CCTCTTCTGGCTTTGGAAGGCCGCAGACGATGCTTGGAGAA CCTCTTCTGGCTTTGGAAGGCTGCAGACGATGCTTGGAGAA < 41bp 0.475145742198902 0.724310578456879 0.86164427 0.87835103 prediction 0.448621156913758 Functional Gain - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20674812 chr1:20674813 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_117740 0 0 0 0 2 VWA5B1 chr1:20674738 3'AG 20674738 Downstream 76bp
chr1 20674813 20674813 1 + C T COAD 20674812 + 20674792 20674832 41 CCTCTTCTGGCTTTGGAAGGCCGCAGACGATGCTTGGAGAA CCTCTTCTGGCTTTGGAAGGCTGCAGACGATGCTTGGAGAA < 41bp 0.475145742198902 0.724310578456879 0.86164427 0.87835103 prediction 0.448621156913758 Functional Gain - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20674812 chr1:20674813 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_117740 0 0 0 0 2 VWA5B1 chr1:20674851 5'GT 20674851 Upstream 39bp
chr9 21854773 21854773 1 + A G rs150135668 21854770 + 21854750 21854790 41 GCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTCT GCGGATGTTATCAACATGACCACGGTTCCAGAGGTGGTTCT < 41bp 0.505627316919791 0.729926708531236 0.046664447 0.12105402 prediction 0.448598783222888 Functional Gain - MTAP ENSG00000099810 CDS Human protein_coding chr9:21854770 chr9:21854773 synonymous SNV . 0 24 hm5C_associated_SNPs_117744 0 0 1 0 1 MTAP chr9:21854869 5'GT 21854869 Upstream 97bp
chrX 54951467 54951467 1 + A G CESC 54951464 + 54951444 54951484 41 AGAATATGATGAATATTTCCCAGAAATCATTGAACGAGCAA AGAATATGATGAATATTTCCCAGGAATCATTGAACGAGCAA < 41bp 0.513482592814156 0.737776449054008 0.14857355 0.25821894 prediction 0.448587712479704 Functional Gain - TRO ENSG00000067445 CDS Human protein_coding chrX:54951464 chrX:54951467 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_117746 0 0 1 2 2 TRO chrX:54951422 3'AG 54951422 Downstream 46bp
chrX 54951467 54951467 1 + A G CESC 54951464 + 54951444 54951484 41 AGAATATGATGAATATTTCCCAGAAATCATTGAACGAGCAA AGAATATGATGAATATTTCCCAGGAATCATTGAACGAGCAA < 41bp 0.513482592814156 0.737776449054008 0.14857355 0.25821894 prediction 0.448587712479704 Functional Gain - TRO ENSG00000067445 CDS Human protein_coding chrX:54951464 chrX:54951467 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_117746 0 0 1 2 2 TRO chrX:54951501 5'GT 54951501 Upstream 35bp
chr2 219447800 219447800 1 + C T COAD 219447799 + 219447779 219447819 41 TGCAATGTGTAGCATCACATCCAGAAACCAGGTAAATGCTT TGCAATGTGTAGCATCACATCTAGAAACCAGGTAAATGCTT < 41bp 0.466391964984462 0.724288535638215 0.16216332 0.67186236 prediction 0.448577071276431 Functional Gain - CNOT9 ENSG00000144580 CDS Human protein_coding chr2:219447799 chr2:219447800 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_117749 0 0 1 0 1 CNOT9 chr2:219447809 5'GT 219447809 Upstream 10bp
chr20 31878791 31878791 1 + C T COAD 31878790 + 31878770 31878810 41 GTCAAGACCATCGTGGAGTTCCACATGACGACTGAGGCCCA GTCAAGACCATCGTGGAGTTCTACATGACGACTGAGGCCCA < 41bp 0.589571792227791 0.81385627838211 0.11791146 0.92583984 prediction 0.448568972308637 Functional Gain - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31878790 chr20:31878791 nonsynonymous SNV 0.019 0 22 hm5C_associated_SNPs_117750 0 0 0 0 1 BPIFB1 chr20:31878763 3'AG 31878763 Downstream 29bp
chr16 1544556 1544556 1 + C T rs569479774 1544555 + 1544535 1544575 41 GAGCTGTGGGCCAGCTTCTTCCTGGAGGGCCCGGCGGACCA GAGCTGTGGGCCAGCTTCTTCTTGGAGGGCCCGGCGGACCA < 41bp 0.55926481734054 0.783546238811493 0.22229451 0.23279408 prediction 0.448562842941905 Functional Gain - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1544555 chr16:1544556 synonymous SNV . 0 22 hm5C_associated_SNPs_117753 0 0 1 0 1 TELO2 chr16:1544617 5'GT 1544617 Upstream 62bp
chr21 43702514 43702514 1 + T C STAD 43702512 + 43702492 43702532 41 AACAACCCTCCAGTCATGTTCTTCGATGAGCCCACCAGGTA AACAACCCTCCAGTCATGTTCTCCGATGAGCCCACCAGGTA < 41bp 0.435825421932341 0.724277267975423 0.20552465 0.3046484 prediction 0.448554535950845 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43702512 chr21:43702514 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_117754 0 0 0 0 1 ABCG1 chr21:43702529 5'GT 43702529 Upstream 16bp
chr1 151236493 151236493 1 + C T UCEC 151236492 + 151236472 151236512 41 ATCACCTTCTGCACGGGCATCCGCGTGGCCCATGTGAGTCC ATCACCTTCTGCACGGGCATCTGCGTGGCCCATGTGAGTCC < 41bp 0.591124251545607 0.815400474020208 0.2138004 0.32127568 prediction 0.448552444949202 Functional Gain - PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151236492 chr1:151236493 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_117755 0 0 1 0 1 PSMD4 chr1:151236504 5'GT 151236504 Upstream 12bp
chr17 79982976 79982976 1 + C T STAD 79982975 + 79982955 79982995 41 GCCCTGCAGCGGCTGGACCTCCGCAACAACCAGATCAGTCA GCCCTGCAGCGGCTGGACCTCTGCAACAACCAGATCAGTCA < 41bp 0.589786782001995 0.814056680389746 0.34581357 0.8727585 prediction 0.448539796775502 Functional Gain - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79982975 chr17:79982976 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_117758 0 0 0 0 1 LRRC45 chr17:79983054 5'GT 79983054 Upstream 79bp
chr14 32030716 32030716 1 + C A CESC 32030715 + 32030695 32030735 41 CTGGTGGCGGGGCCACTGCCCCGCTTGGGGGAAGCCGAGCG CTGGTGGCGGGGCCACTGCCCAGCTTGGGGGAAGCCGAGCG < 41bp 0.550328576070371 0.774597701077003 0.14334583 0.20824248 prediction 0.448538250013264 Functional Gain - NUBPL ENSG00000151413 CDS Human protein_coding chr14:32030715 chr14:32030716 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_117759 0 0 1 0 1 NUBPL chr14:32030753 5'GT 32030753 Upstream 38bp
chr1 10463156 10463156 1 + T C UCEC 10463154 + 10463134 10463174 41 TTGTTGGATACTGGTGACATCATCATTGACGGAGGAAATTC TTGTTGGATACTGGTGACATCACCATTGACGGAGGAAATTC < 41bp 0.429355365546231 0.724260986741543 0.0291031 0.08508173 prediction 0.448521973483086 Functional Gain - PGD ENSG00000142657 CDS Human protein_coding chr1:10463154 chr1:10463156 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_117764 0 0 1 0 2 PGD chr1:10463128 3'AG 10463128 Downstream 29bp
chr1 10463156 10463156 1 + T C UCEC 10463154 + 10463134 10463174 41 TTGTTGGATACTGGTGACATCATCATTGACGGAGGAAATTC TTGTTGGATACTGGTGACATCACCATTGACGGAGGAAATTC < 41bp 0.429355365546231 0.724260986741543 0.0291031 0.08508173 prediction 0.448521973483086 Functional Gain - PGD ENSG00000142657 CDS Human protein_coding chr1:10463154 chr1:10463156 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_117764 0 0 1 0 2 PGD chr1:10463193 5'GT 10463193 Upstream 38bp
chr17 26861810 26861810 1 + A G COAD 26861807 + 26861787 26861827 41 CCGCCCCCTGGGCTGTCCGGCTCAGGCCCCATCCGGCCCCT CCGCCCCCTGGGCTGTCCGGCTCGGGCCCCATCCGGCCCCT < 41bp 0.575090382815652 0.799351244114483 0.19301715 0.2344979 prediction 0.448521722597662 Functional Gain - FOXN1 ENSG00000109101 CDS Human protein_coding chr17:26861807 chr17:26861810 synonymous SNV . 0 24 hm5C_associated_SNPs_117765 0 0 0 0 1 FOXN1 chr17:26861725 3'AG 26861725 Downstream 86bp
chr12 27116299 27116299 1 + A G CESC 27116296 + 27116276 27116316 41 AACTGCAAGCACATGTTGACCAGATAACTGAAATGGCAGCA AACTGCAAGCACATGTTGACCAGGTAACTGAAATGGCAGCA < 41bp 0.503386146236509 0.727644838490013 0.40690166 0.5621532 prediction 0.44851738450701 Functional Gain - FGFR1OP2 ENSG00000111790 CDS Human protein_coding chr12:27116296 chr12:27116299 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_117768 0 0 1 0 2 FGFR1OP2 chr12:27116275 3'AG 27116275 Downstream 25bp
chr12 27116299 27116299 1 + A G CESC 27116296 + 27116276 27116316 41 AACTGCAAGCACATGTTGACCAGATAACTGAAATGGCAGCA AACTGCAAGCACATGTTGACCAGGTAACTGAAATGGCAGCA < 41bp 0.503386146236509 0.727644838490013 0.40690166 0.5621532 prediction 0.44851738450701 Functional Gain - FGFR1OP2 ENSG00000111790 CDS Human protein_coding chr12:27116296 chr12:27116299 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_117768 0 0 1 0 2 FGFR1OP2 chr12:27116388 5'GT 27116388 Upstream 90bp
chr8 11295597 11295597 1 + C T rs111707729 11295596 + 11295576 11295616 41 ACCCATCCACCTTGGCCTCACCCCACCCCAGCACGGAAGCC ACCCATCCACCTTGGCCTCACTCCACCCCAGCACGGAAGCC < 41bp 0.466198482245613 0.724248016081959 0.16848001 0.9186947 prediction 0.448496032163917 Functional Gain - FAM167A-AS1 ENSG00000184608 CDS Human antisense chr8:11295596 chr8:11295597 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_117773 0 0 0 0 1 FAM167A-AS1 chr8:11295549 3'AG 11295549 Downstream 49bp
chr6 36990132 36990132 1 + C T SARC 36990131 + 36990111 36990151 41 ACGCGCCGTCGCCACCACTGCCGGGCCTGCGGCTATGTGAG ACGCGCCGTCGCCACCACTGCTGGGCCTGCGGCTATGTGAG < 41bp 0.48403398183705 0.724247366416803 0.87281144 0.84988666 prediction 0.448494732833606 Functional Gain - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36990131 chr6:36990132 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_117774 0 0 0 0 1 FGD2 chr6:36990146 5'GT 36990146 Upstream 15bp
chr16 82101898 82101898 1 + C T UCEC 82101897 + 82101877 82101917 41 AATTGCGAAGAACCTGCTCTCCGCGCCTCTCGGTGCTCCAA AATTGCGAAGAACCTGCTCTCTGCGCCTCTCGGTGCTCCAA < 41bp 0.570149740070039 0.794396929901107 0.4793785 0.24843153 prediction 0.448494379662136 Functional Gain - HSD17B2 ENSG00000086696 CDS Human protein_coding chr16:82101897 chr16:82101898 nonsynonymous SNV 0.009 1 22 hm5C_associated_SNPs_117775 0 0 1 0 1 HSD17B2 chr16:82101987 5'GT 82101987 Upstream 90bp
chr7 134925328 134925328 1 + C A UCEC 134925324 + 134925304 134925344 41 CCCCATGACAGAGCAACACCCCAGCTGCCAGCACAGCTGCA CCCCATGACAGAGCAACACCCCAGATGCCAGCACAGCTGCA < 41bp 0.312415394008169 0.72424699972322 0.24902195 0.261385 prediction 0.448493999446441 Functional Gain - STRA8 ENSG00000146857 CDS Human protein_coding chr7:134925324 chr7:134925328 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_117776 0 0 0 0 1 STRA8 chr7:134925271 3'AG 134925271 Downstream 58bp
chr8 21861457 21861457 1 + C A LIHC 21861456 + 21861436 21861476 41 GTATTGTGAACAGCCAGCCACCGGAGAAGCAGCAGGCCATG GTATTGTGAACAGCCAGCCACAGGAGAAGCAGCAGGCCATG < 41bp 0.590228045630358 0.814467812771932 0.52515894 0.7904964 prediction 0.448479534283147 Functional Gain - XPO7 ENSG00000130227 CDS Human protein_coding chr8:21861456 chr8:21861457 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_117778 0 0 1 0 2 XPO7 chr8:21861414 3'AG 21861414 Downstream 44bp
chr8 21861457 21861457 1 + C A LIHC 21861456 + 21861436 21861476 41 GTATTGTGAACAGCCAGCCACCGGAGAAGCAGCAGGCCATG GTATTGTGAACAGCCAGCCACAGGAGAAGCAGCAGGCCATG < 41bp 0.590228045630358 0.814467812771932 0.52515894 0.7904964 prediction 0.448479534283147 Functional Gain - XPO7 ENSG00000130227 CDS Human protein_coding chr8:21861456 chr8:21861457 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_117778 0 0 1 0 2 XPO7 chr8:21861541 5'GT 21861541 Upstream 85bp
chr7 150417467 150417467 1 + C T THCA 150417466 + 150417446 150417486 41 GACCCAGTTGGGTCGGTTCACCGCCCAGGACCAGCAGGCGG GACCCAGTTGGGTCGGTTCACTGCCCAGGACCAGCAGGCGG < 41bp 0.483416619532969 0.724238266050753 0.15646723 0.17922106 prediction 0.448476532101506 Functional Gain - GIMAP1;GIMAP1-GIMAP5 ENSG00000213203 CDS Human protein_coding chr7:150417466 chr7:150417467 synonymous SNV . 0 22 hm5C_associated_SNPs_117779 0 0 0 0 1 GIMAP1;GIMAP1-GIMAP5 chr7:150417494 5'GT 150417494 Upstream 28bp
chr17 9757876 9757876 1 + T G STAD 9757873 + 9757853 9757893 41 CACCGTGGGATACTCCTTCTCTCTTATCTCCCTCTTCCTGG CACCGTGGGATACTCCTTCTCTCGTATCTCCCTCTTCCTGG < 41bp 0.323292054089972 0.724235167212705 0.07105574 0.113363534 prediction 0.448470334425409 Functional Gain - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9757873 chr17:9757876 nonsynonymous SNV 0.724 3 24 hm5C_associated_SNPs_117781 0 0 1 0 2 GLP2R chr17:9757812 3'AG 9757812 Downstream 65bp
chr17 9757876 9757876 1 + T G STAD 9757873 + 9757853 9757893 41 CACCGTGGGATACTCCTTCTCTCTTATCTCCCTCTTCCTGG CACCGTGGGATACTCCTTCTCTCGTATCTCCCTCTTCCTGG < 41bp 0.323292054089972 0.724235167212705 0.07105574 0.113363534 prediction 0.448470334425409 Functional Gain - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9757873 chr17:9757876 nonsynonymous SNV 0.724 3 24 hm5C_associated_SNPs_117781 0 0 1 0 2 GLP2R chr17:9757918 5'GT 9757918 Upstream 43bp
chr1 44596342 44596342 1 + C T COAD 44596341 + 44596321 44596361 41 TCTGACCATCTCAAGCAACACCAGAAGACTCATCGGCCGGG TCTGACCATCTCAAGCAACACTAGAAGACTCATCGGCCGGG < 41bp 0.585780740774604 0.810010538220795 0.2689702 0.2570895 prediction 0.44845959489238 Functional Gain - KLF17 ENSG00000171872 CDS Human protein_coding chr1:44596341 chr1:44596342 stopgain 0.027 0 22 hm5C_associated_SNPs_117785 0 0 0 0 1 KLF17 chr1:44596428 5'GT 44596428 Upstream 87bp
chr19 6826689 6826689 1 + C T UCEC 6826688 + 6826668 6826708 41 CAAACACCTGGACCGTGTGGCCGCAGCCCGGGAGGACGTGC CAAACACCTGGACCGTGTGGCTGCAGCCCGGGAGGACGTGC < 41bp 0.464488432857036 0.724227137741505 0.40592408 0.5886828 prediction 0.44845427548301 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6826688 chr19:6826689 synonymous SNV . 0 22 hm5C_associated_SNPs_117786 0 0 0 0 2 VAV1 chr19:6826623 3'AG 6826623 Downstream 67bp
chr19 6826689 6826689 1 + C T UCEC 6826688 + 6826668 6826708 41 CAAACACCTGGACCGTGTGGCCGCAGCCCGGGAGGACGTGC CAAACACCTGGACCGTGTGGCTGCAGCCCGGGAGGACGTGC < 41bp 0.464488432857036 0.724227137741505 0.40592408 0.5886828 prediction 0.44845427548301 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6826688 chr19:6826689 synonymous SNV . 0 22 hm5C_associated_SNPs_117786 0 0 0 0 2 VAV1 chr19:6826722 5'GT 6826722 Upstream 34bp
chr12 69140492 69140492 1 + C G LUSC 69140491 + 69140471 69140511 41 TGGCCAAGGCCATGACCACGCCGGTGATCATAGCCATCCAG TGGCCAAGGCCATGACCACGCGGGTGATCATAGCCATCCAG < 41bp 0.650355950967142 0.874583064336251 0.8291018 0.826699 prediction 0.448454226738219 Functional Gain - SLC35E3 ENSG00000175782 CDS Human protein_coding chr12:69140491 chr12:69140492 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_117787 0 0 1 0 1 SLC35E3 chr12:69140559 5'GT 69140559 Upstream 68bp
chr12 53683909 53683909 1 + C T UCEC 53683908 + 53683888 53683928 41 GGCCCTGGCCACCCTCCAGCCCGGAACCGTGGGCAACACCC GGCCCTGGCCACCCTCCAGCCTGGAACCGTGGGCAACACCC < 41bp 0.590506830090389 0.81473293852097 0.04158625 0.03765592 prediction 0.448452216861163 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53683908 chr12:53683909 synonymous SNV . 0 22 hm5C_associated_SNPs_117788 0 0 1 0 2 ESPL1 chr12:53683869 3'AG 53683869 Downstream 41bp
chr12 53683909 53683909 1 + C T UCEC 53683908 + 53683888 53683928 41 GGCCCTGGCCACCCTCCAGCCCGGAACCGTGGGCAACACCC GGCCCTGGCCACCCTCCAGCCTGGAACCGTGGGCAACACCC < 41bp 0.590506830090389 0.81473293852097 0.04158625 0.03765592 prediction 0.448452216861163 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53683908 chr12:53683909 synonymous SNV . 0 22 hm5C_associated_SNPs_117788 0 0 1 0 2 ESPL1 chr12:53683996 5'GT 53683996 Upstream 88bp
chr21 42804095 42804095 1 + C T SKCM 42804094 + 42804074 42804114 41 CTACTGTGGCCCAGAAAAATCCAGGCTCGGTAAGTTGCTCT CTACTGTGGCCCAGAAAAATCTAGGCTCGGTAAGTTGCTCT < 41bp 0.508041229950946 0.732241547233719 0.89971924 0.8689264 prediction 0.448400634565546 Functional Gain - MX1 ENSG00000157601 CDS Human protein_coding chr21:42804094 chr21:42804095 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_117795 0 0 0 0 1 MX1 chr21:42804102 5'GT 42804102 Upstream 8bp
chr22 40351868 40351868 1 + C A LUAD 40351867 + 40351847 40351887 41 TTTAAGGCGGAGCTTGGGAGCCAGGAAGGATATGTGCCCAA TTTAAGGCGGAGCTTGGGAGCAAGGAAGGATATGTGCCCAA < 41bp 0.475558885963427 0.724197877126226 0.59663624 0.8860805 prediction 0.448395754252452 Functional Gain - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40351867 chr22:40351868 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_117796 0 0 1 1 2 GRAP2 chr22:40351823 3'AG 40351823 Downstream 46bp
chr22 40351868 40351868 1 + C A LUAD 40351867 + 40351847 40351887 41 TTTAAGGCGGAGCTTGGGAGCCAGGAAGGATATGTGCCCAA TTTAAGGCGGAGCTTGGGAGCAAGGAAGGATATGTGCCCAA < 41bp 0.475558885963427 0.724197877126226 0.59663624 0.8860805 prediction 0.448395754252452 Functional Gain - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40351867 chr22:40351868 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_117796 0 0 1 1 2 GRAP2 chr22:40351914 5'GT 40351914 Upstream 47bp
chr6 31584162 31584162 1 + C T LAML 31584161 + 31584141 31584181 41 ATGCTGGAGAAACTTGGAGTCCCCAAGACTCACCTAGAGCT ATGCTGGAGAAACTTGGAGTCTCCAAGACTCACCTAGAGCT < 41bp 0.501496110452638 0.725674751064956 0.09205291 0.95580244 prediction 0.448357281224636 Functional Gain - AIF1 ENSG00000204472 CDS Human protein_coding chr6:31584161 chr6:31584162 nonsynonymous SNV 0.946 4 22 hm5C_associated_SNPs_117798 0 0 1 0 1 AIF1 chr6:31584121 3'AG 31584121 Downstream 42bp
chr4 167020676 167020676 1 + C T PRAD 167020675 + 167020655 167020695 41 GCTTGGTCGATTCTGTGGATCCGGGGTAAATATACCACCAA GCTTGGTCGATTCTGTGGATCTGGGGTAAATATACCACCAA < 41bp 0.495184263353252 0.724177027963172 0.9179673 0.8910918 prediction 0.448354055926344 Functional Gain - TLL1 ENSG00000038295 CDS Human protein_coding chr4:167020675 chr4:167020676 synonymous SNV . 0 22 hm5C_associated_SNPs_117799 0 0 0 0 1 TLL1 chr4:167020679 5'GT 167020679 Upstream 4bp
chr17 78923328 78923328 1 + C G PAAD 78923324 + 78923304 78923344 41 GACCGCGTGGCAGGGGCTCTCGGACATGCTGCCAACGACGC GACCGCGTGGCAGGGGCTCTCGGAGATGCTGCCAACGACGC < 41bp 0.437114566617692 0.724175287827229 0.89591 0.9283596 prediction 0.448350575654457 Functional Gain - RPTOR ENSG00000141564 CDS Human protein_coding chr17:78923324 chr17:78923328 nonsynonymous SNV 0.974 3 25 hm5C_associated_SNPs_117801 0 0 1 0 2 RPTOR chr17:78923243 3'AG 78923243 Downstream 86bp
chr17 78923328 78923328 1 + C G PAAD 78923324 + 78923304 78923344 41 GACCGCGTGGCAGGGGCTCTCGGACATGCTGCCAACGACGC GACCGCGTGGCAGGGGCTCTCGGAGATGCTGCCAACGACGC < 41bp 0.437114566617692 0.724175287827229 0.89591 0.9283596 prediction 0.448350575654457 Functional Gain - RPTOR ENSG00000141564 CDS Human protein_coding chr17:78923324 chr17:78923328 nonsynonymous SNV 0.974 3 25 hm5C_associated_SNPs_117801 0 0 1 0 2 RPTOR chr17:78923347 5'GT 78923347 Upstream 20bp
chr12 56420735 56420735 1 + C T PRAD 56420734 + 56420714 56420754 41 CCTCACTCCCCTGGGGGCATCCGGCTGCCCAATGGCAAGCT CCTCACTCCCCTGGGGGCATCTGGCTGCCCAATGGCAAGCT < 41bp 0.473689427504702 0.724174893272856 0.8830588 0.865008 prediction 0.448349786545713 Functional Gain - IKZF4 ENSG00000123411 CDS Human protein_coding chr12:56420734 chr12:56420735 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_117802 0 0 1 0 1 IKZF4 chr12:56420825 5'GT 56420825 Upstream 91bp
chr16 89629361 89629361 1 + C T LIHC 89629360 + 89629340 89629380 41 TTCAAAGCCTTCGCTAGTCTCCGTATGGCCCGTGCCAACGC TTCAAAGCCTTCGCTAGTCTCTGTATGGCCCGTGCCAACGC < 41bp 0.585425600610449 0.809598936183225 0.34102875 0.4911375 prediction 0.448346671145552 Functional Gain - RPL13 ENSG00000167526 CDS Human protein_coding chr16:89629360 chr16:89629361 nonsynonymous SNV 0.668 0 22 hm5C_associated_SNPs_117803 0 0 0 0 1 RPL13 chr16:89629292 3'AG 89629292 Downstream 70bp
chr2 65300044 65300044 1 + C A KIRC 65300043 + 65300023 65300063 41 ACCGGTGGCCATTCTCAGACCCAGATGTTGAAGGGCAGCTT ACCGGTGGCCATTCTCAGACCAAGATGTTGAAGGGCAGCTT < 41bp 0.468214530072299 0.724169950202748 0.36563665 0.24503419 prediction 0.448339900405495 Functional Gain - CEP68 ENSG00000011523 CDS Human protein_coding chr2:65300043 chr2:65300044 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_117807 0 0 1 0 1 CEP68 chr2:65300114 5'GT 65300114 Upstream 71bp
chr19 15222526 15222526 1 + C T UCEC 15222525 + 15222505 15222545 41 GTGGTACTGGAGGCCATGGCCCGGGACCCCCCAAACAGAGT GTGGTACTGGAGGCCATGGCCTGGGACCCCCCAAACAGAGT < 41bp 0.484573221278523 0.724163088856085 0.3603722 0.26357102 prediction 0.448326177712169 Functional Gain - SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15222525 chr19:15222526 nonsynonymous SNV 0.221 2 22 hm5C_associated_SNPs_117809 0 0 0 0 1 SYDE1 chr19:15222443 3'AG 15222443 Downstream 84bp
chr10 103898508 103898508 1 + C T UCEC 103898507 + 103898487 103898527 41 TCGGAGCTGCTTGTGTCACCCCGGGAGGGCTCCTCTGTGAG TCGGAGCTGCTTGTGTCACCCTGGGAGGGCTCCTCTGTGAG < 41bp 0.567923456996134 0.792085176963836 0.67238045 0.67463636 prediction 0.448323439935405 Functional Gain - PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103898507 chr10:103898508 nonsynonymous SNV 0.991 3 22 hm5C_associated_SNPs_117810 0 0 1 0 2 PPRC1 chr10:103898477 3'AG 103898477 Downstream 32bp
chr10 103898508 103898508 1 + C T UCEC 103898507 + 103898487 103898527 41 TCGGAGCTGCTTGTGTCACCCCGGGAGGGCTCCTCTGTGAG TCGGAGCTGCTTGTGTCACCCTGGGAGGGCTCCTCTGTGAG < 41bp 0.567923456996134 0.792085176963836 0.67238045 0.67463636 prediction 0.448323439935405 Functional Gain - PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103898507 chr10:103898508 nonsynonymous SNV 0.991 3 22 hm5C_associated_SNPs_117810 0 0 1 0 2 PPRC1 chr10:103898522 5'GT 103898522 Upstream 15bp
chr12 121437335 121437335 1 + C T CESC 121437334 + 121437314 121437354 41 GTGAGTCCGGGCTTCACACGCCGGCATCTCAGGCCACCACC GTGAGTCCGGGCTTCACACGCTGGCATCTCAGGCCACCACC < 41bp 0.52504570759961 0.74920611632563 0.92192316 0.9061795 prediction 0.448320817452039 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121437334 chr12:121437335 nonsynonymous SNV 0.100 2 22 hm5C_associated_SNPs_117812 0 0 0 0 3 HNF1A chr12:121437265 3'AG 121437265 Downstream 71bp
chr12 121437335 121437335 1 + C T CESC 121437334 + 121437314 121437354 41 GTGAGTCCGGGCTTCACACGCCGGCATCTCAGGCCACCACC GTGAGTCCGGGCTTCACACGCTGGCATCTCAGGCCACCACC < 41bp 0.52504570759961 0.74920611632563 0.92192316 0.9061795 prediction 0.448320817452039 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121437334 chr12:121437335 nonsynonymous SNV 0.100 2 22 hm5C_associated_SNPs_117812 0 0 0 0 3 HNF1A chr12:121437286 3'AG 121437286 Downstream 50bp
chr12 121437335 121437335 1 + C T CESC 121437334 + 121437314 121437354 41 GTGAGTCCGGGCTTCACACGCCGGCATCTCAGGCCACCACC GTGAGTCCGGGCTTCACACGCTGGCATCTCAGGCCACCACC < 41bp 0.52504570759961 0.74920611632563 0.92192316 0.9061795 prediction 0.448320817452039 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121437334 chr12:121437335 nonsynonymous SNV 0.100 2 22 hm5C_associated_SNPs_117812 0 0 0 0 3 HNF1A chr12:121437430 5'GT 121437430 Upstream 96bp
chr12 119978467 119978467 1 + T A OV 119978463 + 119978443 119978483 41 ATGCCTCAAGAGGATTACATCAGCTGGCTGCAGAGCCGGAT ATGCCTCAAGAGGATTACATCAGCAGGCTGCAGAGCCGGAT < 41bp 0.651175997095381 0.875334589262956 0.24458566 0.24196315 prediction 0.44831718433515 Functional Gain - CCDC60 ENSG00000183273 CDS Human protein_coding chr12:119978463 chr12:119978467 nonsynonymous SNV 0.889 4 25 hm5C_associated_SNPs_117814 0 0 0 0 1 CCDC60 chr12:119978419 3'AG 119978419 Downstream 49bp
chr12 126135480 126135480 1 + C T STAD 126135479 + 126135459 126135499 41 GGACCCTGGCTGGTCGGGAGCCGGGAATAACCACGGTGCAG GGACCCTGGCTGGTCGGGAGCTGGGAATAACCACGGTGCAG < 41bp 0.520763562071348 0.744918558609686 0.910437 0.6552578 prediction 0.448309993076677 Functional Gain - TMEM132B ENSG00000139364 CDS Human protein_coding chr12:126135479 chr12:126135480 nonsynonymous SNV 0.877 0 22 hm5C_associated_SNPs_117816 0 0 0 0 1 TMEM132B chr12:126135499 5'GT 126135499 Upstream 20bp
chr10 13164441 13164441 1 + A G UCEC 13164438 + 13164418 13164458 41 TTCTGAGATTGAAACCCAGACAGAGGGGAGCACAGAGAAAG TTCTGAGATTGAAACCCAGACAGGGGGGAGCACAGAGAAAG < 41bp 0.540709657064731 0.764859652591472 0.40809807 0.7954086 prediction 0.448299991053483 Functional Gain - OPTN ENSG00000123240 CDS Human protein_coding chr10:13164438 chr10:13164441 nonsynonymous SNV 0.050 2 24 hm5C_associated_SNPs_117817 0 0 1 0 1 OPTN chr10:13164487 5'GT 13164487 Upstream 47bp
chr20 3781980 3781980 1 + A G LIHC 3781977 + 3781957 3781997 41 TCGCTTCTCTCTGACCCCTGCAGAGGGGGATACTGAGGAAG TCGCTTCTCTCTGACCCCTGCAGGGGGGGATACTGAGGAAG < 41bp 0.474502708776224 0.724144230186827 0.38784713 0.9003937 prediction 0.448288460373654 Functional Gain - CDC25B ENSG00000101224 CDS Human protein_coding chr20:3781977 chr20:3781980 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_117819 0 0 1 0 1 CDC25B chr20:3782035 5'GT 3782035 Upstream 56bp
chr15 76633491 76633491 1 + C G rs202074846 76633487 + 76633467 76633507 41 CCCCGCAGAGCCTTCAGGGACTGACTGGGACGCCCCTGGTG CCCCGCAGAGCCTTCAGGGACTGAGTGGGACGCCCCTGGTG < 41bp 0.410194904285055 0.724142595333044 0.16040087 0.34678698 prediction 0.448285190666088 Functional Gain - ISL2 ENSG00000159556 CDS Human protein_coding chr15:76633487 chr15:76633491 nonsynonymous SNV 0.961 2 25 hm5C_associated_SNPs_117821 0 0 1 0 1 ISL2 chr15:76633475 3'AG 76633475 Downstream 17bp
chr13 28367192 28367192 1 + C A rs574353637 28367188 + 28367168 28367208 41 CTGCTGCCGCCGCGCTCTACCAGACCTCCTACCCGCTGCCT CTGCTGCCGCCGCGCTCTACCAGAACTCCTACCCGCTGCCT < 41bp 0.696608246057614 0.920746859687483 0.8227651 0.789006 prediction 0.448277227259739 Functional Gain - GSX1 ENSG00000169840 CDS Human protein_coding chr13:28367188 chr13:28367192 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_117822 0 0 0 0 1 GSX1 chr13:28367239 5'GT 28367239 Upstream 48bp
chr11 118869172 118869172 1 + T G LIHC 118869169 + 118869149 118869189 41 GCCCGCAAGGCCATCCGCGCCGCTCAGGTGGAGCGCTATGT GCCCGCAAGGCCATCCGCGCCGCGCAGGTGGAGCGCTATGT < 41bp 0.331261846859965 0.724137097155512 0.03687191 0.1846171 prediction 0.448274194311024 Functional Gain - CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118869169 chr11:118869172 synonymous SNV . 0 24 hm5C_associated_SNPs_117823 0 0 1 0 1 CCDC84 chr11:118869140 3'AG 118869140 Downstream 33bp
chr14 31354733 31354733 1 + C T LUAD 31354732 + 31354712 31354752 41 CGAGGAAGCAGGCATTGTGGCCAGAGAGTTTGGTGTCAATG CGAGGAAGCAGGCATTGTGGCTAGAGAGTTTGGTGTCAATG < 41bp 0.466731385139193 0.724136982530121 0.11612031 0.030656993 prediction 0.448273965060242 Functional Gain - COCH ENSG00000100473 CDS Human protein_coding chr14:31354732 chr14:31354733 synonymous SNV . 0 22 hm5C_associated_SNPs_117824 0 0 1 0 1 COCH chr14:31354826 5'GT 31354826 Upstream 94bp
chr16 90110917 90110917 1 - T C COAD 90110920 - 90110900 90110940 41 GGGGCAGGAAAGCTTCTACCCACATGTGGAGGTGAGAGCCC GGGGCAGGAAAGCTTCTACCCACGTGTGGAGGTGAGAGCCC < 41bp 0.562394606451416 0.78651479298055 0.7816545 0.4684506 prediction 0.448240373058267 Functional Gain - URAHP ENSG00000222019 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:90110920 chr16:90110917 . . 0 24 hm5C_associated_SNPs_117835 0 0 0 0 1 URAHP chr16:90110910 5'GT 90110910 Upstream 8bp
chr19 19349079 19349079 1 + C T LUAD 19349078 + 19349058 19349098 41 CCAGACACCGAGGGCTGTGACCGCGGCTGGCATAAGTTCCA CCAGACACCGAGGGCTGTGACTGCGGCTGGCATAAGTTCCA < 41bp 0.475058882639382 0.72411823051745 0.57394385 0.3576221 prediction 0.4482364610349 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19349078 chr19:19349079 nonsynonymous SNV 0.726 1 22 hm5C_associated_SNPs_117836 0 0 1 0 1 NCAN chr19:19349062 3'AG 19349062 Downstream 18bp
chr17 61744359 61744359 1 + C T COAD 61744358 + 61744338 61744378 41 GCGGATCAAGGCTTCCCAGTCCGCAGGGGATATAAATACTA GCGGATCAAGGCTTCCCAGTCTGCAGGGGATATAAATACTA < 41bp 0.615658178632332 0.839773723535814 0.19472918 0.16280213 prediction 0.448231089806964 Functional Gain - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61744358 chr17:61744359 synonymous SNV . 0 22 hm5C_associated_SNPs_117837 0 0 0 0 2 MAP3K3 chr17:61744300 3'AG 61744300 Downstream 60bp
chr17 61744359 61744359 1 + C T COAD 61744358 + 61744338 61744378 41 GCGGATCAAGGCTTCCCAGTCCGCAGGGGATATAAATACTA GCGGATCAAGGCTTCCCAGTCTGCAGGGGATATAAATACTA < 41bp 0.615658178632332 0.839773723535814 0.19472918 0.16280213 prediction 0.448231089806964 Functional Gain - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61744358 chr17:61744359 synonymous SNV . 0 22 hm5C_associated_SNPs_117837 0 0 0 0 2 MAP3K3 chr17:61744420 5'GT 61744420 Upstream 62bp
chr6 44107240 44107240 1 + C T UCEC 44107239 + 44107219 44107259 41 GGACAAATGTGGGGGCGATGCCGTGCACTACCTGTCCTTTC GGACAAATGTGGGGGCGATGCTGTGCACTACCTGTCCTTTC < 41bp 0.546522271689174 0.770633452289167 0.9025065 0.40509266 prediction 0.448222361199985 Functional Gain - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44107239 chr6:44107240 synonymous SNV . 0 22 hm5C_associated_SNPs_117839 0 0 0 0 1 TMEM63B chr6:44107204 3'AG 44107204 Downstream 37bp
chr19 36256076 36256076 1 + C T UCEC 36256075 + 36256055 36256095 41 GGGCCTTGGCCCCAGGGCACCCGGTAAGGGCTGAGAGGCAA GGGCCTTGGCCCCAGGGCACCTGGTAAGGGCTGAGAGGCAA < 41bp 0.543264060530702 0.767371859432962 0.22639292 0.43916148 prediction 0.448215597804519 Functional Gain - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36256075 chr19:36256076 synonymous SNV . 0 22 hm5C_associated_SNPs_117842 0 0 1 0 1 PROSER3 chr19:36256077 5'GT 36256077 Upstream 2bp
chr11 45203364 45203364 1 + T G UCEC 45203362 + 45203342 45203382 41 TTGGCCCAGACCAATGCAGCCGTGGGGGATATGGTGACGGT TTGGCCCAGACCAATGCAGCCGGGGGGGATATGGTGACGGT < 41bp 0.36774227237486 0.724100549204684 0.7589792 0.9000355 prediction 0.448201098409368 Functional Gain - PRDM11 ENSG00000019485 CDS Human protein_coding chr11:45203362 chr11:45203364 nonsynonymous SNV 0.975 1 23 hm5C_associated_SNPs_117845 0 0 1 0 2 PRDM11 chr11:45203312 3'AG 45203312 Downstream 53bp
chr11 45203364 45203364 1 + T G UCEC 45203362 + 45203342 45203382 41 TTGGCCCAGACCAATGCAGCCGTGGGGGATATGGTGACGGT TTGGCCCAGACCAATGCAGCCGGGGGGGATATGGTGACGGT < 41bp 0.36774227237486 0.724100549204684 0.7589792 0.9000355 prediction 0.448201098409368 Functional Gain - PRDM11 ENSG00000019485 CDS Human protein_coding chr11:45203362 chr11:45203364 nonsynonymous SNV 0.975 1 23 hm5C_associated_SNPs_117845 0 0 1 0 2 PRDM11 chr11:45203436 5'GT 45203436 Upstream 73bp
chr12 9074317 9074317 1 + A G COAD 9074314 + 9074294 9074334 41 GGAACACCACCTCCCCACCCCTCAACCAGTCTCAGGCCCAG GGAACACCACCTCCCCACCCCTCGACCAGTCTCAGGCCCAG < 41bp 0.562409651853236 0.786503063099375 0.14760795 0.3935761 prediction 0.448186822492278 Functional Gain - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9074314 chr12:9074317 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_117846 0 0 0 0 1 PHC1 chr12:9074346 5'GT 9074346 Upstream 30bp
chr10 5494838 5494838 1 + C T COAD 5494837 + 5494817 5494857 41 TTAGGCAATATATGAAATGTCCCGAGGTGAACAGGATTTAA TTAGGCAATATATGAAATGTCTCGAGGTGAACAGGATTTAA < 41bp 0.592849024550721 0.816931694733489 0.14644107 0.3111467 prediction 0.448165340365537 Functional Gain - NET1 ENSG00000173848 CDS Human protein_coding chr10:5494837 chr10:5494838 synonymous SNV . 0 22 hm5C_associated_SNPs_117849 0 0 1 0 3 NET1 chr10:5494788 3'AG 5494788 Downstream 51bp
chr10 5494838 5494838 1 + C T COAD 5494837 + 5494817 5494857 41 TTAGGCAATATATGAAATGTCCCGAGGTGAACAGGATTTAA TTAGGCAATATATGAAATGTCTCGAGGTGAACAGGATTTAA < 41bp 0.592849024550721 0.816931694733489 0.14644107 0.3111467 prediction 0.448165340365537 Functional Gain - NET1 ENSG00000173848 CDS Human protein_coding chr10:5494837 chr10:5494838 synonymous SNV . 0 22 hm5C_associated_SNPs_117849 0 0 1 0 3 NET1 chr10:5494821 3'AG 5494821 Downstream 18bp
chr10 5494838 5494838 1 + C T COAD 5494837 + 5494817 5494857 41 TTAGGCAATATATGAAATGTCCCGAGGTGAACAGGATTTAA TTAGGCAATATATGAAATGTCTCGAGGTGAACAGGATTTAA < 41bp 0.592849024550721 0.816931694733489 0.14644107 0.3111467 prediction 0.448165340365537 Functional Gain - NET1 ENSG00000173848 CDS Human protein_coding chr10:5494837 chr10:5494838 synonymous SNV . 0 22 hm5C_associated_SNPs_117849 0 0 1 0 3 NET1 chr10:5494883 5'GT 5494883 Upstream 46bp
chr11 7669692 7669692 1 + A G UCEC 7669689 + 7669669 7669709 41 GCTGGAGGACTTTGGCCTGGCTCAGTATGTGATCTTTGCCA GCTGGAGGACTTTGGCCTGGCTCGGTATGTGATCTTTGCCA < 41bp 0.483529246862202 0.724076000512846 0.14503995 0.19605029 prediction 0.448152001025691 Functional Gain - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7669689 chr11:7669692 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_117850 0 0 0 0 2 PPFIBP2 chr11:7669618 3'AG 7669618 Downstream 75bp
chr11 7669692 7669692 1 + A G UCEC 7669689 + 7669669 7669709 41 GCTGGAGGACTTTGGCCTGGCTCAGTATGTGATCTTTGCCA GCTGGAGGACTTTGGCCTGGCTCGGTATGTGATCTTTGCCA < 41bp 0.483529246862202 0.724076000512846 0.14503995 0.19605029 prediction 0.448152001025691 Functional Gain - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7669689 chr11:7669692 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_117850 0 0 0 0 2 PPFIBP2 chr11:7669768 5'GT 7669768 Upstream 77bp
chr6 42656027 42656027 1 + C T SKCM 42656026 + 42656006 42656046 41 TGCGGATCTCTGCTGTGCTCCCAGAGTTACTGCTGCCAGAC TGCGGATCTCTGCTGTGCTCCTAGAGTTACTGCTGCCAGAC < 41bp 0.580872185174436 0.804939115461521 0.4188715 0.21246767 prediction 0.44813386057417 Functional Gain - UBR2 ENSG00000024048 CDS Human protein_coding chr6:42656026 chr6:42656027 stopgain 1.000 1 22 hm5C_associated_SNPs_117852 0 0 1 2 2 UBR2 chr6:42655954 3'AG 42655954 Downstream 74bp
chr6 42656027 42656027 1 + C T SKCM 42656026 + 42656006 42656046 41 TGCGGATCTCTGCTGTGCTCCCAGAGTTACTGCTGCCAGAC TGCGGATCTCTGCTGTGCTCCTAGAGTTACTGCTGCCAGAC < 41bp 0.580872185174436 0.804939115461521 0.4188715 0.21246767 prediction 0.44813386057417 Functional Gain - UBR2 ENSG00000024048 CDS Human protein_coding chr6:42656026 chr6:42656027 stopgain 1.000 1 22 hm5C_associated_SNPs_117852 0 0 1 2 2 UBR2 chr6:42656124 5'GT 42656124 Upstream 98bp
chr7 44047093 44047093 1 + C T COAD 44047092 + 44047072 44047112 41 AACCCGAGGGCCAGGAAGAACCGCTCTCAGATAGTCCTGTT AACCCGAGGGCCAGGAAGAACTGCTCTCAGATAGTCCTGTT < 41bp 0.474392533779895 0.724066319477528 0.23674288 0.19764471 prediction 0.448132638955056 Functional Gain - SPDYE1 ENSG00000136206 CDS Human protein_coding chr7:44047092 chr7:44047093 nonsynonymous SNV 0.121 1 22 hm5C_associated_SNPs_117853 0 0 0 0 1 SPDYE1 chr7:44047185 5'GT 44047185 Upstream 93bp
chr2 61244926 61244926 1 + C A rs564528921 61244925 + 61244905 61244945 41 AGCCGCCACCTCCCCCCAAACCCTGGGAGACCCGCCGAATT AGCCGCCACCTCCCCCCAAACACTGGGAGACCCGCCGAATT < 41bp 0.5622947514966 0.786355044234021 0.34128582 0.5363436 prediction 0.448120585474842 Functional Gain - PEX13 ENSG00000162928 CDS Human protein_coding chr2:61244925 chr2:61244926 nonsynonymous SNV 0.941 5 22 hm5C_associated_SNPs_117855 0 0 1 0 1 PEX13 chr2:61244986 5'GT 61244986 Upstream 61bp
chr1 44437687 44437687 1 + C A UCEC 44437683 + 44437663 44437703 41 GCTGGAAGCTGCCTGCAACCCTGCCTGGCCACCTCCAGGCC GCTGGAAGCTGCCTGCAACCCTGCATGGCCACCTCCAGGCC < 41bp 0.718855857108373 0.94291559706915 0.03224823 0.13072342 prediction 0.448119479921554 Functional Gain - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44437683 chr1:44437687 synonymous SNV . 0 25 hm5C_associated_SNPs_117856 0 0 1 0 1 DPH2 chr1:44437742 5'GT 44437742 Upstream 56bp
chr9 138235268 138235268 1 + C T SARC 138235267 + 138235247 138235287 41 GGGCCTCAGCCCAGGGCAGACCTCAGTGTCCTTCCTGTGGC GGGCCTCAGCCCAGGGCAGACTTCAGTGTCCTTCCTGTGGC < 41bp 0.494056325787613 0.72405911337959 0.35343271 0.82239866 prediction 0.44811822675918 Functional Gain - C9orf62 ENSG00000178243 CDS Human lincRNA chr9:138235267 chr9:138235268 synonymous SNV . 0 22 hm5C_associated_SNPs_117857 0 0 0 0 1 C9orf62 chr9:138235317 5'GT 138235317 Upstream 50bp
chr20 36488692 36488692 1 + C T UCEC 36488691 + 36488671 36488711 41 TAGATTCGCCAGAGGGTTCACCAGATCCTAAACATGCGAGG TAGATTCGCCAGAGGGTTCACTAGATCCTAAACATGCGAGG < 41bp 0.480314854912588 0.724058351362641 0.844098 0.23656157 prediction 0.448116702725282 Functional Gain - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488691 chr20:36488692 stopgain 1.000 1 22 hm5C_associated_SNPs_117858 0 0 1 0 1 CTNNBL1 chr20:36488674 3'AG 36488674 Downstream 19bp
chr9 130475370 130475370 1 + C T UCEC 130475369 + 130475349 130475389 41 CTGACATCACCCCCTACCAGCCGGGGGATCTAGGCCTGGTA CTGACATCACCCCCTACCAGCTGGGGGATCTAGGCCTGGTA < 41bp 0.543209237856774 0.767254407182967 0.9378854 0.9127659 prediction 0.448090338652386 Functional Gain - CFAP157 ENSG00000160401 CDS Human protein_coding chr9:130475369 chr9:130475370 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_117860 0 0 0 0 1 CFAP157 chr9:130475299 3'AG 130475299 Downstream 72bp
chr22 26688381 26688381 1 + C T LUSC 26688380 + 26688360 26688400 41 TCCTCTTCCAAGATGCTCTTCCCGAGGGAGATGCTAGCCCT TCCTCTTCCAAGATGCTCTTCTCGAGGGAGATGCTAGCCCT < 41bp 0.476529901879207 0.724043391007076 0.56946725 0.84012365 prediction 0.448086782014151 Functional Gain - SEZ6L ENSG00000100095 CDS Human protein_coding chr22:26688380 chr22:26688381 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_117861 0 0 0 0 1 SEZ6L chr22:26688372 3'AG 26688372 Downstream 10bp
chr7 55955281 55955281 1 + T G rs6972914 55955278 + 55955258 55955298 41 CGGGGCCCTCGGCACCTTCTCCCTCCCGGGTCCACCGCGGC CGGGGCCCTCGGCACCTTCTCCCGCCCGGGTCCACCGCGGC < 41bp 0.343650167248399 0.724043222084512 0.41475993 0.4385808 prediction 0.448086444169023 Functional Gain - ZNF713 ENSG00000178665;ENSG00000249773 UTR5 Human other chr7:55955278 chr7:55955281 . . 0 24 hm5C_associated_SNPs_117862 0 0 0 0 1 ZNF713 chr7:55955373 5'GT 55955373 Upstream 93bp
chr9 131891325 131891325 1 + C T SKCM 131891324 + 131891304 131891344 41 GGTGGATTGATGAGACTCCTCCAGTGGACCAGCCCTCTCGG GGTGGATTGATGAGACTCCTCTAGTGGACCAGCCCTCTCGG < 41bp 0.541587097410348 0.765617250258844 0.52733946 0.3786191 prediction 0.448060305696994 Functional Gain - PTPA ENSG00000119383 CDS Human protein_coding chr9:131891324 chr9:131891325 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_117864 0 0 1 0 2 PTPA chr9:131891264 3'AG 131891264 Downstream 62bp
chr9 131891325 131891325 1 + C T SKCM 131891324 + 131891304 131891344 41 GGTGGATTGATGAGACTCCTCCAGTGGACCAGCCCTCTCGG GGTGGATTGATGAGACTCCTCTAGTGGACCAGCCCTCTCGG < 41bp 0.541587097410348 0.765617250258844 0.52733946 0.3786191 prediction 0.448060305696994 Functional Gain - PTPA ENSG00000119383 CDS Human protein_coding chr9:131891324 chr9:131891325 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_117864 0 0 1 0 2 PTPA chr9:131891389 5'GT 131891389 Upstream 65bp
chr14 102904488 102904488 1 + C G TGCT 102904484 + 102904464 102904504 41 TGCAGCGCGTTGCCGGGCGCCGGGCTGCGCTGGCAGAAGTT TGCAGCGCGTTGCCGGGCGCCGGGGTGCGCTGGCAGAAGTT < 41bp 0.420055556506265 0.724027984758041 0.8646839 0.9083888 prediction 0.448055969516081 Functional Gain - TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102904484 chr14:102904488 nonsynonymous SNV 0.981 2 25 hm5C_associated_SNPs_117867 0 0 1 0 1 TECPR2 chr14:102904542 5'GT 102904542 Upstream 55bp
chr14 100402649 100402649 1 + C T GBM 100402648 + 100402628 100402668 41 ACAGTTCCTCGTGTCAAATTCCGGAGACTACGAAATCCTCT ACAGTTCCTCGTGTCAAATTCTGGAGACTACGAAATCCTCT < 41bp 0.590344666284964 0.81437254974487 0.9107877 0.5551481 prediction 0.448055766919812 Functional Gain - EML1 ENSG00000066629 CDS Human protein_coding chr14:100402648 chr14:100402649 synonymous SNV . 0 22 hm5C_associated_SNPs_117868 0 0 0 0 1 EML1 chr14:100402671 5'GT 100402671 Upstream 23bp
chr9 137005907 137005907 1 + C T UCEC 137005906 + 137005886 137005926 41 TGTCCTCCGTGAAATTCAGCCCGAATGGAGAGTGGCTGGCA TGTCCTCCGTGAAATTCAGCCTGAATGGAGAGTGGCTGGCA < 41bp 0.456097508136431 0.724027509137207 0.03656292 0.032033563 prediction 0.448055018274414 Functional Gain - WDR5 ENSG00000196363 CDS Human protein_coding chr9:137005906 chr9:137005907 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_117869 0 0 1 0 2 WDR5 chr9:137005825 3'AG 137005825 Downstream 83bp
chr9 137005907 137005907 1 + C T UCEC 137005906 + 137005886 137005926 41 TGTCCTCCGTGAAATTCAGCCCGAATGGAGAGTGGCTGGCA TGTCCTCCGTGAAATTCAGCCTGAATGGAGAGTGGCTGGCA < 41bp 0.456097508136431 0.724027509137207 0.03656292 0.032033563 prediction 0.448055018274414 Functional Gain - WDR5 ENSG00000196363 CDS Human protein_coding chr9:137005906 chr9:137005907 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_117869 0 0 1 0 2 WDR5 chr9:137005933 5'GT 137005933 Upstream 27bp
chr19 42791796 42791796 1 + C T LGG 42791795 + 42791775 42791815 41 CGTCATCCCAACCAGGACAACCGGACCGTCAGCAAGATCCT CGTCATCCCAACCAGGACAACTGGACCGTCAGCAAGATCCT < 41bp 0.468380324953713 0.724025367493292 0.41470075 0.704706 prediction 0.448050734986585 Functional Gain - CIC ENSG00000079432 CDS Human protein_coding chr19:42791795 chr19:42791796 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_117870 0 0 1 0 2 CIC chr19:42791697 3'AG 42791697 Downstream 100bp
chr19 42791796 42791796 1 + C T LGG 42791795 + 42791775 42791815 41 CGTCATCCCAACCAGGACAACCGGACCGTCAGCAAGATCCT CGTCATCCCAACCAGGACAACTGGACCGTCAGCAAGATCCT < 41bp 0.468380324953713 0.724025367493292 0.41470075 0.704706 prediction 0.448050734986585 Functional Gain - CIC ENSG00000079432 CDS Human protein_coding chr19:42791795 chr19:42791796 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_117870 0 0 1 0 2 CIC chr19:42791879 5'GT 42791879 Upstream 84bp
chr10 118352048 118352048 1 + T A PRAD 118352044 + 118352024 118352064 41 GATGAGAGCTGGGTGACAGACATGTGCAAGGTAGGAGCCAG GATGAGAGCTGGGTGACAGACATGAGCAAGGTAGGAGCCAG < 41bp 0.655279159942936 0.879300149445984 0.26493445 0.3569048 prediction 0.448041979006098 Functional Gain - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118352044 chr10:118352048 nonsynonymous SNV 0.973 5 25 hm5C_associated_SNPs_117875 0 0 0 0 1 PNLIPRP1 chr10:118352053 5'GT 118352053 Upstream 6bp
chr5 176815124 176815124 1 + T C rs5030873 176815122 + 176815102 176815142 41 TGGTGGCCTCCTTCAACATCCATGGTGGCCGTGATGCTCCT TGGTGGCCTCCTTCAACATCCACGGTGGCCGTGATGCTCCT < 41bp 0.448303383927545 0.724019954049161 0.31348267 0.30620784 prediction 0.448039908098323 Functional Gain - SLC34A1 ENSG00000131183 CDS Human protein_coding chr5:176815122 chr5:176815124 synonymous SNV . 0 23 hm5C_associated_SNPs_117876 1 1 0 0 1 SLC34A1 chr5:176815190 5'GT 176815190 Upstream 67bp
chr2 108443511 108443511 1 + C A rs7576738 108443510 + 108443490 108443530 41 CGGGGAGCGGTACGTCGCCTCCGTGCAGGGCTCCGCCCCGT CGGGGAGCGGTACGTCGCCTCAGTGCAGGGCTCCGCCCCGT < 41bp 0.528494494088906 0.752513723976876 0.28042772 0.315167 prediction 0.44803845977594 Functional Gain - RGPD4 ENSG00000196862 CDS Human protein_coding chr2:108443510 chr2:108443511 synonymous SNV . 0 22 hm5C_associated_SNPs_117877 0 0 0 0 1 RGPD4 chr2:108443541 5'GT 108443541 Upstream 31bp
chr12 50497810 50497810 1 + C G rs140876219 50497809 + 50497789 50497829 41 CTAGGGAGTGTGGCACTGAGCCGGCTCAGGCAGAGACGCGG CTAGGGAGTGTGGCACTGAGCGGGCTCAGGCAGAGACGCGG < 41bp 0.519570797867581 0.743584149030348 0.5020574 0.86209005 prediction 0.448026702325533 Functional Gain - GPD1 ENSG00000167588 UTR5 Human protein_coding chr12:50497809 chr12:50497810 . . 0 22 hm5C_associated_SNPs_117878 0 0 0 0 1 GPD1 chr12:50497874 5'GT 50497874 Upstream 65bp
chr11 44077749 44077749 1 + T G LUSC 44077746 + 44077726 44077766 41 TTCCTCTAGGATTTTGGCATCTCTGGCTTCCGCTTTGGTGC TTCCTCTAGGATTTTGGCATCTCGGGCTTCCGCTTTGGTGC < 41bp 0.32387076549583 0.724006414491626 0.15805751 0.21056363 prediction 0.448012828983251 Functional Gain - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44077746 chr11:44077749 synonymous SNV . 0 24 hm5C_associated_SNPs_117881 0 0 0 0 1 ACCSL chr11:44077735 3'AG 44077735 Downstream 15bp
chr10 69669071 69669071 1 + A G UCEC 69669068 + 69669048 69669088 41 ACCGCTTGCTATCATGAAACCAGAGATTGTGTTTTTTGGTG ACCGCTTGCTATCATGAAACCAGGGATTGTGTTTTTTGGTG < 41bp 0.537644506995882 0.761647701743884 0.33343506 0.88648736 prediction 0.448006389496004 Functional Gain - SIRT1 ENSG00000096717 CDS Human protein_coding chr10:69669068 chr10:69669071 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_117883 0 0 1 0 1 SIRT1 chr10:69669013 3'AG 69669013 Downstream 59bp
chr18 29625636 29625636 1 + T C rs145377749 29625633 + 29625613 29625653 41 GTCCCTTTTGTCAGAGGGAACTGTATGAAGACAGCTTGCTG GTCCCTTTTGTCAGAGGGAACTGCATGAAGACAGCTTGCTG < 41bp 0.506404190964737 0.73040659512536 0.34631816 0.53522456 prediction 0.448004808321246 Functional Gain - RNF125 ENSG00000101695 CDS Human protein_coding chr18:29625633 chr18:29625636 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_117884 0 0 0 0 2 RNF125 chr18:29625605 3'AG 29625605 Downstream 32bp
chr18 29625636 29625636 1 + T C rs145377749 29625633 + 29625613 29625653 41 GTCCCTTTTGTCAGAGGGAACTGTATGAAGACAGCTTGCTG GTCCCTTTTGTCAGAGGGAACTGCATGAAGACAGCTTGCTG < 41bp 0.506404190964737 0.73040659512536 0.34631816 0.53522456 prediction 0.448004808321246 Functional Gain - RNF125 ENSG00000101695 CDS Human protein_coding chr18:29625633 chr18:29625636 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_117884 0 0 0 0 2 RNF125 chr18:29625695 5'GT 29625695 Upstream 60bp
chr12 123463643 123463643 1 + T C UCEC 123463641 + 123463621 123463661 41 CATCTGCAGGCACCCACAGCCCTGACGGAGCCCCTGGAGGT CATCTGCAGGCACCCACAGCCCCGACGGAGCCCCTGGAGGT < 41bp 0.566993296083587 0.790994170500856 0.12512302 0.16636693 prediction 0.448001748834539 Functional Gain - OGFOD2 ENSG00000111325 CDS Human protein_coding chr12:123463641 chr12:123463643 nonsynonymous SNV 0.032 1 23 hm5C_associated_SNPs_117886 0 0 1 0 1 OGFOD2 chr12:123463630 3'AG 123463630 Downstream 14bp
chr19 30099607 30099607 1 + C T UCEC 30099606 + 30099586 30099626 41 TCAGAAAGAGGCGAATGACTCCGATGTCCAGGTCAGTTCTT TCAGAAAGAGGCGAATGACTCTGATGTCCAGGTCAGTTCTT < 41bp 0.515038365002348 0.73903371637068 0.56332827 0.27444065 prediction 0.447990702736664 Functional Gain - POP4 ENSG00000105171 CDS Human protein_coding chr19:30099606 chr19:30099607 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_117890 0 0 1 0 2 POP4 chr19:30099564 3'AG 30099564 Downstream 44bp
chr19 30099607 30099607 1 + C T UCEC 30099606 + 30099586 30099626 41 TCAGAAAGAGGCGAATGACTCCGATGTCCAGGTCAGTTCTT TCAGAAAGAGGCGAATGACTCTGATGTCCAGGTCAGTTCTT < 41bp 0.515038365002348 0.73903371637068 0.56332827 0.27444065 prediction 0.447990702736664 Functional Gain - POP4 ENSG00000105171 CDS Human protein_coding chr19:30099606 chr19:30099607 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_117890 0 0 1 0 2 POP4 chr19:30099616 5'GT 30099616 Upstream 10bp
chr11 118403725 118403725 1 + C T GBM 118403724 + 118403704 118403744 41 TTGCCCTGGTGCGTGCCAACCCGCCGGCCAATGTCACCTGG TTGCCCTGGTGCGTGCCAACCTGCCGGCCAATGTCACCTGG < 41bp 0.585025821293155 0.809021108391211 0.23734668 0.1118969 prediction 0.447990574196112 Functional Gain - TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118403724 chr11:118403725 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_117891 0 0 0 0 1 TMEM25 chr11:118403632 3'AG 118403632 Downstream 94bp
chr5 38451530 38451530 1 + T C LUAD 38451528 + 38451508 38451548 41 CCCAACAGCGACTTCATTTCCTTGGGCCTTCGGGATGGAGC CCCAACAGCGACTTCATTTCCTCGGGCCTTCGGGATGGAGC < 41bp 0.435788287418697 0.72399440124863 0.06208697 0.105712354 prediction 0.447988802497261 Functional Gain - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38451528 chr5:38451530 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_117892 0 0 0 0 1 EGFLAM chr5:38451560 5'GT 38451560 Upstream 31bp
chr7 148904528 148904528 1 + C T READ 148904527 + 148904507 148904547 41 TGTGTGGGAGCAGCGCCACCCCGAAGAGAGAGAAATCCCAA TGTGTGGGAGCAGCGCCACCCTGAAGAGAGAGAAATCCCAA < 41bp 0.576191552619118 0.800179608005375 0.06063649 0.07666758 prediction 0.447976110772514 Functional Gain - ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148904527 chr7:148904528 synonymous SNV . 0 22 hm5C_associated_SNPs_117893 0 0 1 0 2 ZNF282 chr7:148904443 3'AG 148904443 Downstream 86bp
chr7 148904528 148904528 1 + C T READ 148904527 + 148904507 148904547 41 TGTGTGGGAGCAGCGCCACCCCGAAGAGAGAGAAATCCCAA TGTGTGGGAGCAGCGCCACCCTGAAGAGAGAGAAATCCCAA < 41bp 0.576191552619118 0.800179608005375 0.06063649 0.07666758 prediction 0.447976110772514 Functional Gain - ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148904527 chr7:148904528 synonymous SNV . 0 22 hm5C_associated_SNPs_117893 0 0 1 0 2 ZNF282 chr7:148904562 5'GT 148904562 Upstream 35bp
chr2 37474631 37474631 1 + A G UCEC 37474628 + 37474608 37474648 41 GACCACAAGCTTCATGATGTCTTAATTGCCCCAGGAACAGC GACCACAAGCTTCATGATGTCTTGATTGCCCCAGGAACAGC < 41bp 0.500685854654546 0.724659777315091 0.04514861 0.09079096 prediction 0.447947845321091 Functional Gain - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37474628 chr2:37474631 synonymous SNV . 0 24 hm5C_associated_SNPs_117895 0 0 1 3 1 NDUFAF7 chr2:37474599 3'AG 37474599 Downstream 33bp
chr16 334920 334920 1 + C T rs45619835 334919 + 334899 334939 41 GCCACCTTCTTGGCCTTGGCCCAGGACGCCCTGGACATGAC GCCACCTTCTTGGCCTTGGCCTAGGACGCCCTGGACATGAC < 41bp 0.562872275452746 0.786845618895878 0.30123723 0.4308951 prediction 0.447946686886263 Functional Gain - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:334919 chr16:334920 stopgain 0.267 0 22 hm5C_associated_SNPs_117896 0 0 0 0 2 PDIA2 chr16:334878 3'AG 334878 Downstream 43bp
chr16 334920 334920 1 + C T rs45619835 334919 + 334899 334939 41 GCCACCTTCTTGGCCTTGGCCCAGGACGCCCTGGACATGAC GCCACCTTCTTGGCCTTGGCCTAGGACGCCCTGGACATGAC < 41bp 0.562872275452746 0.786845618895878 0.30123723 0.4308951 prediction 0.447946686886263 Functional Gain - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:334919 chr16:334920 stopgain 0.267 0 22 hm5C_associated_SNPs_117896 0 0 0 0 2 PDIA2 chr16:335015 5'GT 335015 Upstream 96bp
chr19 45448490 45448490 1 + C T SKCM 45448489 + 45448469 45448509 41 CAAGGCCTGGTTCCTCGAATCCAAAGACAGCCTCTTGAAGA CAAGGCCTGGTTCCTCGAATCTAAAGACAGCCTCTTGAAGA < 41bp 0.559749869060285 0.783719178855832 0.1361076 0.08413121 prediction 0.447938619591094 Functional Gain - APOC4 ENSG00000224916;ENSG00000267467 CDS Human other chr19:45448489 chr19:45448490 synonymous SNV . 0 22 hm5C_associated_SNPs_117897 0 0 0 0 1 APOC4 chr19:45448397 3'AG 45448397 Downstream 94bp
chr9 130868020 130868020 1 + C T LUAD 130868019 + 130867999 130868039 41 CCCTCCCAGGTCCATGCCTCCCGCAGCAACAACATGGGCAT CCCTCCCAGGTCCATGCCTCCTGCAGCAACAACATGGGCAT < 41bp 0.598988815579935 0.822952378985696 0.14168882 0.3992057 prediction 0.447927126811522 Functional Gain - SLC25A25 ENSG00000148339 CDS Human protein_coding chr9:130868019 chr9:130868020 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_117900 0 0 1 0 1 SLC25A25 chr9:130868008 3'AG 130868008 Downstream 13bp
chr7 33945274 33945274 1 + C A LAML 33945270 + 33945250 33945290 41 GCTCTGGCTGAGCGTTACTGCCGCCGCTCGCCTGGGATTAC GCTCTGGCTGAGCGTTACTGCCGCAGCTCGCCTGGGATTAC < 41bp 0.317355750320518 0.723960885137575 0.3872877 0.29397434 prediction 0.44792177027515 Functional Gain - BMPER ENSG00000164619 CDS Human protein_coding chr7:33945270 chr7:33945274 nonsynonymous SNV 0.993 0 25 hm5C_associated_SNPs_117901 0 0 0 0 1 BMPER chr7:33945358 5'GT 33945358 Upstream 85bp
chr19 19166203 19166203 1 + C A CESC 19166202 + 19166182 19166222 41 ACCCAGCATCTGACCAGCCCCCAGGTACCCACCTCGGGGGG ACCCAGCATCTGACCAGCCCCAAGGTACCCACCTCGGGGGG < 41bp 0.602946208407869 0.826904403613346 0.24782938 0.4080097 prediction 0.447916390410955 Functional Gain - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19166202 chr19:19166203 nonsynonymous SNV 0.992 1 22 hm5C_associated_SNPs_117904 0 0 1 0 1 ARMC6 chr19:19166205 5'GT 19166205 Upstream 3bp
chr19 846182 846182 1 + C A UCEC 846181 + 846161 846201 41 CAACCTCAGTGCCTCCGTCGCCACAGTCCAGCTGCCACAGC CAACCTCAGTGCCTCCGTCGCAACAGTCCAGCTGCCACAGC < 41bp 0.581923535793413 0.805872606061372 0.7959444 0.3751692 prediction 0.447898140535918 Functional Gain - PRTN3 ENSG00000196415 CDS Human protein_coding chr19:846181 chr19:846182 synonymous SNV . 0 22 hm5C_associated_SNPs_117905 0 0 0 0 1 PRTN3 chr19:846147 3'AG 846147 Downstream 36bp
chr7 101187376 101187376 1 + T A HNSC 101187372 + 101187352 101187392 41 AGAGAAGGGTCCAGCGGGGCCGCCTGGTAAGAAAACCCCCC AGAGAAGGGTCCAGCGGGGCCGCCAGGTAAGAAAACCCCCC < 41bp 0.390182982082988 0.723942883466393 0.035146296 0.29816797 prediction 0.447885766932786 Functional Gain - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101187372 chr7:101187376 synonymous SNV . 0 25 hm5C_associated_SNPs_117909 0 0 0 0 2 COL26A1 chr7:101187279 3'AG 101187279 Downstream 98bp
chr7 101187376 101187376 1 + T A HNSC 101187372 + 101187352 101187392 41 AGAGAAGGGTCCAGCGGGGCCGCCTGGTAAGAAAACCCCCC AGAGAAGGGTCCAGCGGGGCCGCCAGGTAAGAAAACCCCCC < 41bp 0.390182982082988 0.723942883466393 0.035146296 0.29816797 prediction 0.447885766932786 Functional Gain - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101187372 chr7:101187376 synonymous SNV . 0 25 hm5C_associated_SNPs_117909 0 0 0 0 2 COL26A1 chr7:101187377 5'GT 101187377 Upstream 2bp
chr16 28993747 28993747 1 + C T STAD 28993746 + 28993726 28993766 41 CTGGGTGTGGAGATCAGCCGCCGGCTCCGCCACTCCAACCC CTGGGTGTGGAGATCAGCCGCTGGCTCCGCCACTCCAACCC < 41bp 0.543180431413086 0.767121026743678 0.31324536 0.33528364 prediction 0.447881190661184 Functional Gain - SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28993746 chr16:28993747 nonsynonymous SNV 0.977 0 22 hm5C_associated_SNPs_117910 0 0 1 0 1 SPNS1 chr16:28993677 3'AG 28993677 Downstream 71bp
chr1 170513889 170513889 1 + C T SKCM 170513888 + 170513868 170513908 41 ACCATGAAACTAAAGCGGATCCAGAAGGAGTTGCAGGCTTT ACCATGAAACTAAAGCGGATCTAGAAGGAGTTGCAGGCTTT < 41bp 0.578338472673725 0.802266672055745 0.27201372 0.14684224 prediction 0.44785639876404 Functional Gain - GORAB ENSG00000120370 CDS Human protein_coding chr1:170513888 chr1:170513889 stopgain 1.000 1 22 hm5C_associated_SNPs_117915 0 0 0 0 2 GORAB chr1:170513846 3'AG 170513846 Downstream 44bp
chr1 170513889 170513889 1 + C T SKCM 170513888 + 170513868 170513908 41 ACCATGAAACTAAAGCGGATCCAGAAGGAGTTGCAGGCTTT ACCATGAAACTAAAGCGGATCTAGAAGGAGTTGCAGGCTTT < 41bp 0.578338472673725 0.802266672055745 0.27201372 0.14684224 prediction 0.44785639876404 Functional Gain - GORAB ENSG00000120370 CDS Human protein_coding chr1:170513888 chr1:170513889 stopgain 1.000 1 22 hm5C_associated_SNPs_117915 0 0 0 0 2 GORAB chr1:170513986 5'GT 170513986 Upstream 98bp
chr22 26838471 26838471 1 + C T UCEC 26838470 + 26838450 26838490 41 GCTGGTGGTGGGGGGAGAGCCCCAGTGCTGGGCAGAAGGGC GCTGGTGGTGGGGGGAGAGCCTCAGTGCTGGGCAGAAGGGC < 41bp 0.596064722395976 0.819984677005687 0.55184096 0.2800415 prediction 0.447839909219422 Functional Gain - ASPHD2 ENSG00000128203 CDS Human protein_coding chr22:26838470 chr22:26838471 synonymous SNV . 0 22 hm5C_associated_SNPs_117921 0 0 0 0 2 ASPHD2 chr22:26838425 3'AG 26838425 Downstream 47bp
chr22 26838471 26838471 1 + C T UCEC 26838470 + 26838450 26838490 41 GCTGGTGGTGGGGGGAGAGCCCCAGTGCTGGGCAGAAGGGC GCTGGTGGTGGGGGGAGAGCCTCAGTGCTGGGCAGAAGGGC < 41bp 0.596064722395976 0.819984677005687 0.55184096 0.2800415 prediction 0.447839909219422 Functional Gain - ASPHD2 ENSG00000128203 CDS Human protein_coding chr22:26838470 chr22:26838471 synonymous SNV . 0 22 hm5C_associated_SNPs_117921 0 0 0 0 2 ASPHD2 chr22:26838538 5'GT 26838538 Upstream 68bp
chr2 155252602 155252602 1 + C T UCEC 155252601 + 155252581 155252621 41 GGTACCTAGAAAACATCTATCCGGACTCCCAGATCCCAAGA GGTACCTAGAAAACATCTATCTGGACTCCCAGATCCCAAGA < 41bp 0.547238628940255 0.771153517191134 0.8571201 0.67289823 prediction 0.447829776501757 Functional Gain - GALNT13 ENSG00000144278 CDS Human protein_coding chr2:155252601 chr2:155252602 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_117924 0 0 0 0 2 GALNT13 chr2:155252503 3'AG 155252503 Downstream 100bp
chr2 155252602 155252602 1 + C T UCEC 155252601 + 155252581 155252621 41 GGTACCTAGAAAACATCTATCCGGACTCCCAGATCCCAAGA GGTACCTAGAAAACATCTATCTGGACTCCCAGATCCCAAGA < 41bp 0.547238628940255 0.771153517191134 0.8571201 0.67289823 prediction 0.447829776501757 Functional Gain - GALNT13 ENSG00000144278 CDS Human protein_coding chr2:155252601 chr2:155252602 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_117924 0 0 0 0 2 GALNT13 chr2:155252642 5'GT 155252642 Upstream 41bp
chr5 121786272 121786272 1 + C A LUAD 121786271 + 121786251 121786291 41 GAAAGTCCCAGTGGAAATCTCCAGATGCAGATGATGATTCT GAAAGTCCCAGTGGAAATCTCAAGATGCAGATGATGATTCT < 41bp 0.542169488831551 0.766084023981162 0.91767883 0.4266937 prediction 0.447829070299224 Functional Gain - SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121786271 chr5:121786272 nonsynonymous SNV 0.826 1 22 hm5C_associated_SNPs_117925 0 0 0 2 1 SNCAIP chr5:121786228 3'AG 121786228 Downstream 45bp
chr2 113832800 113832800 1 + A G UCEC 113832797 + 113832777 113832817 41 TTCACCTTCTTCCAGAGCAGCTCAGGCTCCGCCTTCAGGCT TTCACCTTCTTCCAGAGCAGCTCGGGCTCCGCCTTCAGGCT < 41bp 0.469505308617828 0.723905533085679 0.18873978 0.3177096 prediction 0.447811066171357 Functional Gain - IL1F10 ENSG00000136697 CDS Human protein_coding chr2:113832797 chr2:113832800 synonymous SNV . 0 24 hm5C_associated_SNPs_117929 0 0 0 0 1 IL1F10 chr2:113832729 3'AG 113832729 Downstream 72bp
chr22 21380134 21380134 1 + C T COAD 21380133 + 21380113 21380153 41 GAGCAACCGGGTGTGGAGGCCCGCACCCTGCTCAAGCTCTA GAGCAACCGGGTGTGGAGGCCTGCACCCTGCTCAAGCTCTA < 41bp 0.467298967687301 0.723901420866176 0.09468967 0.1405524 prediction 0.447802841732352 Functional Gain - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21380133 chr22:21380134 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_117931 0 0 0 0 2 P2RX6 chr22:21380094 3'AG 21380094 Downstream 41bp
chr22 21380134 21380134 1 + C T COAD 21380133 + 21380113 21380153 41 GAGCAACCGGGTGTGGAGGCCCGCACCCTGCTCAAGCTCTA GAGCAACCGGGTGTGGAGGCCTGCACCCTGCTCAAGCTCTA < 41bp 0.467298967687301 0.723901420866176 0.09468967 0.1405524 prediction 0.447802841732352 Functional Gain - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21380133 chr22:21380134 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_117931 0 0 0 0 2 P2RX6 chr22:21380187 5'GT 21380187 Upstream 54bp
chr19 7565782 7565782 1 + A G UCEC 7565779 + 7565759 7565799 41 GCTGGACTTCCTCAAGGCCTCGCACTTCTCGCTGGGGCCTG GCTGGACTTCCTCAAGGCCTCGCGCTTCTCGCTGGGGCCTG < 41bp 0.566461934027033 0.790361655327357 0.22759774 0.483655 prediction 0.44779944260065 Functional Gain - TEX45 ENSG00000198723 CDS Human protein_coding chr19:7565779 chr19:7565782 nonsynonymous SNV 0.650 1 24 hm5C_associated_SNPs_117933 0 0 0 0 1 TEX45 chr19:7565692 3'AG 7565692 Downstream 91bp
chr2 120436773 120436773 1 + A G rs2272053 120436770 + 120436750 120436790 41 TTTGCGGCCGCCCTGCCGCGCGCACATGTAGGCGTTCCGAG TTTGCGGCCGCCCTGCCGCGCGCGCATGTAGGCGTTCCGAG < 41bp 0.546161136077234 0.770053414001028 0.13370082 0.43273276 prediction 0.447784555847588 Functional Gain - TMEM177 ENSG00000144120 UTR5 Human protein_coding chr2:120436770 chr2:120436773 . . 0 24 hm5C_associated_SNPs_117936 0 0 1 0 2 TMEM177 chr2:120436801 5'GT 120436801 Upstream 29bp
chr2 120436773 120436773 1 + A G rs2272053 120436770 + 120436750 120436790 41 TTTGCGGCCGCCCTGCCGCGCGCACATGTAGGCGTTCCGAG TTTGCGGCCGCCCTGCCGCGCGCGCATGTAGGCGTTCCGAG < 41bp 0.546161136077234 0.770053414001028 0.13370082 0.43273276 prediction 0.447784555847588 Functional Gain - TMEM177 ENSG00000144120 UTR5 Human protein_coding chr2:120436770 chr2:120436773 . . 0 24 hm5C_associated_SNPs_117936 0 0 1 0 2 TMEM177 chr2:120436852 5'GT 120436852 Upstream 80bp
chr6 43497086 43497086 1 + C A UCEC 43497085 + 43497065 43497105 41 GGTCAAGAGAGCGAGACCATCCTGGCTAACATGGTGAAACC GGTCAAGAGAGCGAGACCATCATGGCTAACATGGTGAAACC < 41bp 0.473510482817309 0.7238843308995 0.13628817 0.40336403 prediction 0.447768661798999 Functional Gain - POLR1C ENSG00000171453 CDS Human protein_coding chr6:43497085 chr6:43497086 nonsynonymous SNV 0.013 3 22 hm5C_associated_SNPs_117938 0 0 0 0 1 POLR1C chr6:43496987 3'AG 43496987 Downstream 100bp
chrX 47085738 47085738 1 + C T COAD 47085737 + 47085717 47085757 41 CACCGGCAGAAGGTGCTACACCGAGACCTCAAGCCCCAGAA CACCGGCAGAAGGTGCTACACTGAGACCTCAAGCCCCAGAA < 41bp 0.577497054491641 0.801377006393745 0.29393303 0.2706781 prediction 0.447759903804207 Functional Gain - CDK16 ENSG00000102225 CDS Human protein_coding chrX:47085737 chrX:47085738 stopgain 1.000 1 22 hm5C_associated_SNPs_117940 0 0 1 0 2 CDK16 chrX:47085678 3'AG 47085678 Downstream 61bp
chrX 47085738 47085738 1 + C T COAD 47085737 + 47085717 47085757 41 CACCGGCAGAAGGTGCTACACCGAGACCTCAAGCCCCAGAA CACCGGCAGAAGGTGCTACACTGAGACCTCAAGCCCCAGAA < 41bp 0.577497054491641 0.801377006393745 0.29393303 0.2706781 prediction 0.447759903804207 Functional Gain - CDK16 ENSG00000102225 CDS Human protein_coding chrX:47085737 chrX:47085738 stopgain 1.000 1 22 hm5C_associated_SNPs_117940 0 0 1 0 2 CDK16 chrX:47085801 5'GT 47085801 Upstream 64bp
chr16 76389294 76389294 1 + C A STAD 76389293 + 76389273 76389313 41 TGGAGAGAGAATGGAGGTCACCGCTGTGGCCACTCAAGGGG TGGAGAGAGAATGGAGGTCACAGCTGTGGCCACTCAAGGGG < 41bp 0.465927210772019 0.723879711484509 0.10797161 0.17557544 prediction 0.447759422969018 Functional Gain - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76389293 chr16:76389294 synonymous SNV . 0 22 hm5C_associated_SNPs_117941 0 0 0 0 1 CNTNAP4 chr16:76389215 3'AG 76389215 Downstream 80bp
chr1 16330879 16330879 1 + C A GBM 16330878 + 16330858 16330898 41 GACAGGCCTGGAGACCAGCTCCGGTAAGAGGCGGCAAAGGG GACAGGCCTGGAGACCAGCTCAGGTAAGAGGCGGCAAAGGG < 41bp 0.465533898528082 0.723877995236885 0.25839597 0.40307146 prediction 0.447755990473769 Functional Gain - C1orf64 ENSG00000183888 CDS Human protein_coding chr1:16330878 chr1:16330879 synonymous SNV . 0 22 hm5C_associated_SNPs_117943 0 0 1 0 1 C1orf64 chr1:16330880 5'GT 16330880 Upstream 2bp
chr16 722987 722987 1 + C T COAD 722986 + 722966 723006 41 CTCCTCCAAGGCCGACCTGCCCGAAGGTGTCGCGGTGTCTG CTCCTCCAAGGCCGACCTGCCTGAAGGTGTCGCGGTGTCTG < 41bp 0.58214691569965 0.806022093794677 0.31651962 0.2770055 prediction 0.447750356190055 Functional Gain - RHOT2 ENSG00000140983 CDS Human protein_coding chr16:722986 chr16:722987 synonymous SNV . 0 22 hm5C_associated_SNPs_117945 0 0 1 0 1 RHOT2 chr16:722928 3'AG 722928 Downstream 60bp
chr16 28909389 28909389 1 + C A BLCA 28909385 + 28909365 28909405 41 CCGAGACAGAAAGTCCATGTCTGTCTATTGCTCCCCAGCCA CCGAGACAGAAAGTCCATGTCTGTATATTGCTCCCCAGCCA < 41bp 0.287882033466604 0.723872195565776 0.26459748 0.34725416 prediction 0.447744391131552 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28909385 chr16:28909389 synonymous SNV . 0 25 hm5C_associated_SNPs_117948 0 0 0 0 2 ATP2A1 chr16:28909321 3'AG 28909321 Downstream 69bp
chr16 28909389 28909389 1 + C A BLCA 28909385 + 28909365 28909405 41 CCGAGACAGAAAGTCCATGTCTGTCTATTGCTCCCCAGCCA CCGAGACAGAAAGTCCATGTCTGTATATTGCTCCCCAGCCA < 41bp 0.287882033466604 0.723872195565776 0.26459748 0.34725416 prediction 0.447744391131552 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28909385 chr16:28909389 synonymous SNV . 0 25 hm5C_associated_SNPs_117948 0 0 0 0 2 ATP2A1 chr16:28909446 5'GT 28909446 Upstream 58bp
chr12 10339077 10339077 1 + C T LUAD 10339076 + 10339056 10339096 41 GGCCTGACGTCCCTGTGCTTCCGCTGCTGCTGTCTGAGCCG GGCCTGACGTCCCTGTGCTTCTGCTGCTGCTGTCTGAGCCG < 41bp 0.552851246107559 0.776717918259763 0.116553694 0.20309776 prediction 0.447733344304409 Functional Gain - TMEM52B ENSG00000165685 CDS Human protein_coding chr12:10339076 chr12:10339077 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_117951 0 0 0 0 1 TMEM52B chr12:10339019 3'AG 10339019 Downstream 59bp
chr16 23197816 23197816 1 + T A LUAD 23197812 + 23197792 23197832 41 TCCTCTGGCAGTGCGCCCTCCTCGTCTTCTCCTTCTATACT TCCTCTGGCAGTGCGCCCTCCTCGACTTCTCCTTCTATACT < 41bp 0.363909719810393 0.72386474689773 0.015281558 0.037564307 prediction 0.447729493795459 Functional Gain - SCNN1G ENSG00000166828 CDS Human protein_coding chr16:23197812 chr16:23197816 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_117952 0 0 0 0 1 SCNN1G chr16:23197909 5'GT 23197909 Upstream 94bp
chr3 101475941 101475941 1 + A G STAD 101475938 + 101475918 101475958 41 GGCAGTTGATGAACCAAAGCCAAAATGAAGAGTTGTCTCCT GGCAGTTGATGAACCAAAGCCAAGATGAAGAGTTGTCTCCT < 41bp 0.488504977733523 0.723859381810172 0.3488046 0.20854741 prediction 0.447718763620343 Functional Gain - CEP97 ENSG00000182504 CDS Human protein_coding chr3:101475938 chr3:101475941 nonsynonymous SNV 0.972 0 24 hm5C_associated_SNPs_117953 0 0 0 0 3 CEP97 chr3:101475907 3'AG 101475907 Downstream 35bp
chr3 101475941 101475941 1 + A G STAD 101475938 + 101475918 101475958 41 GGCAGTTGATGAACCAAAGCCAAAATGAAGAGTTGTCTCCT GGCAGTTGATGAACCAAAGCCAAGATGAAGAGTTGTCTCCT < 41bp 0.488504977733523 0.723859381810172 0.3488046 0.20854741 prediction 0.447718763620343 Functional Gain - CEP97 ENSG00000182504 CDS Human protein_coding chr3:101475938 chr3:101475941 nonsynonymous SNV 0.972 0 24 hm5C_associated_SNPs_117953 0 0 0 0 3 CEP97 chr3:101475917 3'AG 101475917 Downstream 25bp
chr3 101475941 101475941 1 + A G STAD 101475938 + 101475918 101475958 41 GGCAGTTGATGAACCAAAGCCAAAATGAAGAGTTGTCTCCT GGCAGTTGATGAACCAAAGCCAAGATGAAGAGTTGTCTCCT < 41bp 0.488504977733523 0.723859381810172 0.3488046 0.20854741 prediction 0.447718763620343 Functional Gain - CEP97 ENSG00000182504 CDS Human protein_coding chr3:101475938 chr3:101475941 nonsynonymous SNV 0.972 0 24 hm5C_associated_SNPs_117953 0 0 0 0 3 CEP97 chr3:101476040 5'GT 101476040 Upstream 100bp
chr11 3405479 3405479 1 + T C UCEC 3405477 + 3405457 3405497 41 ACCAAGGAGCTGCAGCAGTTCGTCGTCAGTGGCAGCCCCAT ACCAAGGAGCTGCAGCAGTTCGCCGTCAGTGGCAGCCCCAT < 41bp 0.555132383787174 0.778989885379166 0.15382782 0.18934032 prediction 0.447715003183984 Functional Gain - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3405477 chr11:3405479 . . 0 23 hm5C_associated_SNPs_117954 0 0 1 0 2 TSSC2 chr11:3405397 3'AG 3405397 Downstream 83bp
chr11 3405479 3405479 1 + T C UCEC 3405477 + 3405457 3405497 41 ACCAAGGAGCTGCAGCAGTTCGTCGTCAGTGGCAGCCCCAT ACCAAGGAGCTGCAGCAGTTCGCCGTCAGTGGCAGCCCCAT < 41bp 0.555132383787174 0.778989885379166 0.15382782 0.18934032 prediction 0.447715003183984 Functional Gain - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3405477 chr11:3405479 . . 0 23 hm5C_associated_SNPs_117954 0 0 1 0 2 TSSC2 chr11:3405514 5'GT 3405514 Upstream 36bp
chr17 79139473 79139473 1 + C A rs2659034 79139472 + 79139452 79139492 41 GCCCACGCAGGCCCTCCGTGCCCCAGTTACCTGTGCCCTGG GCCCACGCAGGCCCTCCGTGCACCAGTTACCTGTGCCCTGG < 41bp 0.558005502966741 0.781861541832334 0.04960358 0.095781475 prediction 0.447712077731184 Functional Gain - AATK-AS1 ENSG00000225180 ncRNA_exonic Human protein_coding chr17:79139472 chr17:79139473 . . 0 22 hm5C_associated_SNPs_117956 0 0 0 0 1 AATK-AS1 chr17:79139547 5'GT 79139547 Upstream 75bp
chr7 6628267 6628267 1 + C T SKCM 6628266 + 6628246 6628286 41 AGTACCTGTTCCTGACTTTTCCACGGATTGTCTTCATGCTG AGTACCTGTTCCTGACTTTTCTACGGATTGTCTTCATGCTG < 41bp 0.481257168368314 0.723854770508753 0.44243777 0.25487605 prediction 0.447709541017506 Functional Gain - ZDHHC4 ENSG00000136247 CDS Human protein_coding chr7:6628266 chr7:6628267 nonsynonymous SNV 0.973 4 22 hm5C_associated_SNPs_117958 0 0 1 0 1 ZDHHC4 chr7:6628248 3'AG 6628248 Downstream 20bp
chr16 57765092 57765092 1 + C T LIHC 57765091 + 57765071 57765111 41 CTTCAGACACAAGGAACTGGCCCCACTGAAGTACCTGGCTC CTTCAGACACAAGGAACTGGCTCCACTGAAGTACCTGGCTC < 41bp 0.588693730241383 0.812547997243562 0.12908617 0.8830074 prediction 0.447708534004359 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57765091 chr16:57765092 synonymous SNV . 0 22 hm5C_associated_SNPs_117960 0 0 1 0 1 DRC7 chr16:57765077 3'AG 57765077 Downstream 16bp
chr3 193336664 193336664 1 + C T STAD 193336663 + 193336643 193336683 41 ATATTTATCTTTAAGGTTCTCCGGAAGAAACGGCGTTTAGA ATATTTATCTTTAAGGTTCTCTGGAAGAAACGGCGTTTAGA < 41bp 0.541479359865532 0.765323500218887 0.8703395 0.49923038 prediction 0.44768828070671 Functional Gain - OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336663 chr3:193336664 nonsynonymous SNV 0.941 0 22 hm5C_associated_SNPs_117964 0 0 1 0 2 OPA1 chr3:193336658 3'AG 193336658 Downstream 7bp
chr3 193336664 193336664 1 + C T STAD 193336663 + 193336643 193336683 41 ATATTTATCTTTAAGGTTCTCCGGAAGAAACGGCGTTTAGA ATATTTATCTTTAAGGTTCTCTGGAAGAAACGGCGTTTAGA < 41bp 0.541479359865532 0.765323500218887 0.8703395 0.49923038 prediction 0.44768828070671 Functional Gain - OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336663 chr3:193336664 nonsynonymous SNV 0.941 0 22 hm5C_associated_SNPs_117964 0 0 1 0 2 OPA1 chr3:193336725 5'GT 193336725 Upstream 62bp
chr10 134165143 134165143 1 + C G BLCA 134165142 + 134165122 134165162 41 CCTCCTCCAGGAGCATCTTACCCGACCTCTTGTCACCGTAC CCTCCTCCAGGAGCATCTTACGCGACCTCTTGTCACCGTAC < 41bp 0.405098296967848 0.723842548715697 0.15101516 0.62183607 prediction 0.447685097431394 Functional Gain - LRRC27 ENSG00000148814 CDS Human protein_coding chr10:134165142 chr10:134165143 nonsynonymous SNV 0.008 4 22 hm5C_associated_SNPs_117966 0 0 0 0 1 LRRC27 chr10:134165111 3'AG 134165111 Downstream 33bp
chr1 14075948 14075948 1 + C A HNSC 14075947 + 14075927 14075967 41 TGAGGAAGAGCGAGCCAGCGCCCGGAGCAAGCGGAGCTCCC TGAGGAAGAGCGAGCCAGCGCACGGAGCAAGCGGAGCTCCC < 41bp 0.57062656045486 0.794462550172144 0.67409766 0.8563667 prediction 0.447671979434567 Functional Gain - PRDM2 ENSG00000116731 CDS Human protein_coding chr1:14075947 chr1:14075948 synonymous SNV . 0 22 hm5C_associated_SNPs_117972 0 0 1 0 1 PRDM2 chr1:14075982 5'GT 14075982 Upstream 35bp
chr12 27641445 27641445 1 + C T UCEC 27641444 + 27641424 27641464 41 CAAATTGAAAAGCTGGAGGACCGGGGCCTTGACCTTGATCA CAAATTGAAAAGCTGGAGGACTGGGGCCTTGACCTTGATCA < 41bp 0.513383050589593 0.737213963639202 0.6364056 0.44859612 prediction 0.447661826099217 Functional Gain - SMCO2 ENSG00000165935 CDS Human protein_coding chr12:27641444 chr12:27641445 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_117976 0 0 1 0 2 SMCO2 chr12:27641393 3'AG 27641393 Downstream 53bp
chr12 27641445 27641445 1 + C T UCEC 27641444 + 27641424 27641464 41 CAAATTGAAAAGCTGGAGGACCGGGGCCTTGACCTTGATCA CAAATTGAAAAGCTGGAGGACTGGGGCCTTGACCTTGATCA < 41bp 0.513383050589593 0.737213963639202 0.6364056 0.44859612 prediction 0.447661826099217 Functional Gain - SMCO2 ENSG00000165935 CDS Human protein_coding chr12:27641444 chr12:27641445 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_117976 0 0 1 0 2 SMCO2 chr12:27641480 5'GT 27641480 Upstream 36bp
chr16 21172574 21172574 1 + T A SKCM 21172570 + 21172550 21172590 41 TGCAGAAGAAGCTGTCTCTGCTGATAGACTCCTTCCAGAAT TGCAGAAGAAGCTGTCTCTGCTGAAAGACTCCTTCCAGAAT < 41bp 0.381804970291448 0.723828964782584 0.109571576 0.160537 prediction 0.447657929565168 Functional Gain - TMEM159 ENSG00000011638 CDS Human protein_coding chr16:21172570 chr16:21172574 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_117977 0 0 1 0 1 TMEM159 chr16:21172599 5'GT 21172599 Upstream 26bp
chr7 70880999 70880999 1 + C T GBM 70880998 + 70880978 70881018 41 TGAGGGCTGGAAGGTGGCTACCGGGCAGGTCACTGGCTTCT TGAGGGCTGGAAGGTGGCTACTGGGCAGGTCACTGGCTTCT < 41bp 0.504594607737476 0.72842252466291 0.8725208 0.82551306 prediction 0.44765583385087 Functional Gain - GALNT17 ENSG00000185274 CDS Human protein_coding chr7:70880998 chr7:70880999 synonymous SNV . 0 22 hm5C_associated_SNPs_117978 0 0 0 0 1 GALNT17 chr7:70881049 5'GT 70881049 Upstream 51bp
chr3 46448971 46448971 1 + C G rs113709301 46448970 + 46448950 46448990 41 GGTCTGGAGGCTGCGCCCTTCCCCTGCAGGAGCTCAGCCCA GGTCTGGAGGCTGCGCCCTTCGCCTGCAGGAGCTCAGCCCA < 41bp 0.528378103313036 0.752205352907682 0.31737733 0.5417369 prediction 0.447654499189293 Functional Gain - CCRL2 ENSG00000121797 UTR5 Human protein_coding chr3:46448970 chr3:46448971 . . 0 22 hm5C_associated_SNPs_117979 0 0 0 0 1 CCRL2 chr3:46448993 5'GT 46448993 Upstream 23bp
chr19 57746636 57746636 1 + T G OV 57746633 + 57746613 57746653 41 AGGTAGATGTGAGGTTTCCACTATCAATGCCTCTGGGGGCC AGGTAGATGTGAGGTTTCCACTAGCAATGCCTCTGGGGGCC < 41bp 0.323063119401665 0.723821026434408 0.24086952 0.2938555 prediction 0.447642052868817 Functional Gain - AURKC ENSG00000105146 CDS Human protein_coding chr19:57746633 chr19:57746636 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_117980 0 0 0 0 1 AURKC chr19:57746615 3'AG 57746615 Downstream 22bp
chr19 50926246 50926246 1 + C A KIRC 50926245 + 50926225 50926265 41 ACTGGCCCCCAGCCTGGAGGCCCCGGGGCCTGGCCTCCCTG ACTGGCCCCCAGCCTGGAGGCACCGGGGCCTGGCCTCCCTG < 41bp 0.595812186829772 0.819626897549696 0.242625 0.3839568 prediction 0.447629421439849 Functional Gain - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50926245 chr19:50926246 nonsynonymous SNV 0.801 0 22 hm5C_associated_SNPs_117982 0 0 0 0 1 SPIB chr19:50926294 5'GT 50926294 Upstream 49bp
chr11 118869151 118869151 1 + C A rs34451365 118869150 + 118869130 118869170 41 TCTGCGGCAGGTGGAGGCGGCCCGCAAGGCCATCCGCGCCG TCTGCGGCAGGTGGAGGCGGCACGCAAGGCCATCCGCGCCG < 41bp 0.572301058566278 0.796113119776643 0.27342397 0.25362056 prediction 0.44762412242073 Functional Gain - CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118869150 chr11:118869151 synonymous SNV . 0 22 hm5C_associated_SNPs_117984 0 0 1 0 1 CCDC84 chr11:118869140 3'AG 118869140 Downstream 12bp
chr10 71003054 71003054 1 + C A STAD 71003053 + 71003033 71003073 41 GCCTTCGGGGACGACGGGGCCCTGGAGGACATTCGCACTGA GCCTTCGGGGACGACGGGGCCATGGAGGACATTCGCACTGA < 41bp 0.458644846956967 0.723811113189267 0.592318 0.8665023 prediction 0.447622226378534 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71003053 chr10:71003054 nonsynonymous SNV 0.636 5 22 hm5C_associated_SNPs_117985 0 0 0 0 1 HKDC1 chr10:71003121 5'GT 71003121 Upstream 68bp
chr8 35624435 35624435 1 + C A LUSC 35624431 + 35624411 35624451 41 CCCCTGCAGGAAGTCCCGTTCTCCCGCGTGTGGTGCAGTAA CCCCTGCAGGAAGTCCCGTTCTCCAGCGTGTGGTGCAGTAA < 41bp 0.308194090048167 0.723805142534147 0.37783858 0.92172307 prediction 0.447610285068293 Functional Gain - UNC5D ENSG00000156687 CDS Human protein_coding chr8:35624431 chr8:35624435 nonsynonymous SNV 0.987 2 25 hm5C_associated_SNPs_117986 0 0 0 0 1 UNC5D chr8:35624420 3'AG 35624420 Downstream 16bp
chr8 117782517 117782517 1 + C T UCEC 117782516 + 117782496 117782536 41 AATGCCAAGTTCGAAATTGTCCTCATTTCAAGAATGCAGTG AATGCCAAGTTCGAAATTGTCTTCATTTCAAGAATGCAGTG < 41bp 0.581624427153546 0.80541786359593 0.068834335 0.123099834 prediction 0.447586872884768 Functional Gain - UTP23 ENSG00000147679 CDS Human protein_coding chr8:117782516 chr8:117782517 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_117990 0 0 0 0 2 UTP23 chr8:117782431 3'AG 117782431 Downstream 87bp
chr8 117782517 117782517 1 + C T UCEC 117782516 + 117782496 117782536 41 AATGCCAAGTTCGAAATTGTCCTCATTTCAAGAATGCAGTG AATGCCAAGTTCGAAATTGTCTTCATTTCAAGAATGCAGTG < 41bp 0.581624427153546 0.80541786359593 0.068834335 0.123099834 prediction 0.447586872884768 Functional Gain - UTP23 ENSG00000147679 CDS Human protein_coding chr8:117782516 chr8:117782517 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_117990 0 0 0 0 2 UTP23 chr8:117782605 5'GT 117782605 Upstream 89bp
chr2 71191882 71191882 1 + T C UCEC 71191880 + 71191860 71191900 41 CCCCAGTACGCCTGCTATGCCATCGGGAAGGACGTGCAGGC CCCCAGTACGCCTGCTATGCCACCGGGAAGGACGTGCAGGC < 41bp 0.617091790517141 0.840882820257451 0.22228956 0.23861337 prediction 0.447582059480621 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71191880 chr2:71191882 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_117991 0 0 0 0 1 ATP6V1B1 chr2:71191866 3'AG 71191866 Downstream 17bp
chr1 223933061 223933061 1 + C T rs17597 223933060 + 223933040 223933080 41 GGTGGATGACAGGCTGCCCACCAAGGACGGGGAGCTGCTCT GGTGGATGACAGGCTGCCCACTAAGGACGGGGAGCTGCTCT < 41bp 0.50729707121107 0.731086740408501 0.07599321 0.036284506 prediction 0.44757933839486 Functional Gain - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223933060 chr1:223933061 synonymous SNV . 0 22 hm5C_associated_SNPs_117992 0 0 1 0 2 CAPN2 chr1:223933008 3'AG 223933008 Downstream 54bp
chr1 223933061 223933061 1 + C T rs17597 223933060 + 223933040 223933080 41 GGTGGATGACAGGCTGCCCACCAAGGACGGGGAGCTGCTCT GGTGGATGACAGGCTGCCCACTAAGGACGGGGAGCTGCTCT < 41bp 0.50729707121107 0.731086740408501 0.07599321 0.036284506 prediction 0.44757933839486 Functional Gain - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223933060 chr1:223933061 synonymous SNV . 0 22 hm5C_associated_SNPs_117992 0 0 1 0 2 CAPN2 chr1:223933141 5'GT 223933141 Upstream 81bp
chr6 42993026 42993026 1 + C A GBM 42993025 + 42993005 42993045 41 CTGGAAATGTCAGCCAAGATCCGAGTACCATTTTTACGTCA CTGGAAATGTCAGCCAAGATCAGAGTACCATTTTTACGTCA < 41bp 0.455275145263616 0.723784062334879 0.7326437 0.92471087 prediction 0.447568124669758 Functional Gain - RRP36 ENSG00000124541 CDS Human protein_coding chr6:42993025 chr6:42993026 synonymous SNV . 0 22 hm5C_associated_SNPs_117993 0 0 1 0 2 RRP36 chr6:42993001 3'AG 42993001 Downstream 26bp
chr6 42993026 42993026 1 + C A GBM 42993025 + 42993005 42993045 41 CTGGAAATGTCAGCCAAGATCCGAGTACCATTTTTACGTCA CTGGAAATGTCAGCCAAGATCAGAGTACCATTTTTACGTCA < 41bp 0.455275145263616 0.723784062334879 0.7326437 0.92471087 prediction 0.447568124669758 Functional Gain - RRP36 ENSG00000124541 CDS Human protein_coding chr6:42993025 chr6:42993026 synonymous SNV . 0 22 hm5C_associated_SNPs_117993 0 0 1 0 2 RRP36 chr6:42993067 5'GT 42993067 Upstream 42bp
chr1 25628038 25628038 1 + C G COAD 25628037 + 25628017 25628057 41 TCTTCTTGTGGATGTTCTGGCCAAGTTTCAACTCTGCTCTG TCTTCTTGTGGATGTTCTGGCGAAGTTTCAACTCTGCTCTG < 41bp 0.401775653899818 0.723776184211663 0.22862324 0.7081655 prediction 0.447552368423326 Functional Gain - RHD ENSG00000187010 CDS Human protein_coding chr1:25628037 chr1:25628038 nonsynonymous SNV 0.966 4 22 hm5C_associated_SNPs_117997 0 0 1 0 1 RHD chr1:25628011 3'AG 25628011 Downstream 28bp
chr10 88418411 88418411 1 + C G LUAD 88418410 + 88418390 88418430 41 CTGGGCGTTTGGCTCTATGCCCTGGCCTGGAGTCTGCCACC CTGGGCGTTTGGCTCTATGCCGTGGCCTGGAGTCTGCCACC < 41bp 0.399192086732157 0.723770765848193 0.20930439 0.911438 prediction 0.447541531696386 Functional Gain - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88418410 chr10:88418411 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_118000 0 0 0 0 1 OPN4 chr10:88418444 5'GT 88418444 Upstream 34bp
chr19 41450333 41450333 1 + T C COAD 41450331 + 41450311 41450351 41 CATACACAGAGGCAGTCATCCGTGAGATTCAGAGATTTGCT CATACACAGAGGCAGTCATCCGCGAGATTCAGAGATTTGCT < 41bp 0.584451199717393 0.808218169988734 0.87353945 0.9062426 prediction 0.447533940542681 Functional Gain - CYP2B7P ENSG00000256612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:41450331 chr19:41450333 . . 0 23 hm5C_associated_SNPs_118001 0 0 0 0 2 CYP2B7P chr19:41450236 3'AG 41450236 Downstream 98bp
chr19 41450333 41450333 1 + T C COAD 41450331 + 41450311 41450351 41 CATACACAGAGGCAGTCATCCGTGAGATTCAGAGATTTGCT CATACACAGAGGCAGTCATCCGCGAGATTCAGAGATTTGCT < 41bp 0.584451199717393 0.808218169988734 0.87353945 0.9062426 prediction 0.447533940542681 Functional Gain - CYP2B7P ENSG00000256612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:41450331 chr19:41450333 . . 0 23 hm5C_associated_SNPs_118001 0 0 0 0 2 CYP2B7P chr19:41450423 5'GT 41450423 Upstream 91bp
chr19 55106772 55106772 1 + C T rs202039753 55106771 + 55106751 55106791 41 TCTCTGTGGGCCCCGTGAGCCCGAGTCGCAGGTGGTCGTAC TCTCTGTGGGCCCCGTGAGCCTGAGTCGCAGGTGGTCGTAC < 41bp 0.53120781163115 0.754964103744503 0.28359193 0.29830047 prediction 0.447512584226706 Functional Gain - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55106771 chr19:55106772 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_118005 0 0 0 0 1 LILRA1 chr19:55106867 5'GT 55106867 Upstream 96bp
chr2 219492868 219492868 1 + A G SKCM 219492865 + 219492845 219492885 41 ATCAGGATATGACTCAACCCCTGAACCACTACTTCATCTGC ATCAGGATATGACTCAACCCCTGGACCACTACTTCATCTGC < 41bp 0.555895929637143 0.779639981048135 0.03220737 0.007648587 prediction 0.447488102821984 Functional Gain - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219492865 chr2:219492868 nonsynonymous SNV 0.989 1 24 hm5C_associated_SNPs_118007 0 0 0 0 1 PLCD4 chr2:219492953 5'GT 219492953 Upstream 86bp
chr13 53036541 53036541 1 + A G BLCA 53036538 + 53036518 53036558 41 AAGCTGGCAAAGGAAGAGTGCTAAAAAGGCCCCCTAATTCA AAGCTGGCAAAGGAAGAGTGCTAGAAAGGCCCCCTAATTCA < 41bp 0.53386861964976 0.757609311232625 0.030308813 0.06617999 prediction 0.44748138316573 Functional Gain - CKAP2 ENSG00000136108 CDS Human protein_coding chr13:53036538 chr13:53036541 nonsynonymous SNV 0.031 3 24 hm5C_associated_SNPs_118008 0 0 1 0 1 CKAP2 chr13:53036498 3'AG 53036498 Downstream 44bp
chr4 70148376 70148376 1 + C A GBM 70148372 + 70148352 70148392 41 ACTGCAAACCTGCCAAACCCCTACCTAAGGTAAACATACTT ACTGCAAACCTGCCAAACCCCTACATAAGGTAAACATACTT < 41bp 0.301279763483095 0.723739257408557 0.0962131 0.91463935 prediction 0.447478514817115 Functional Gain - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70148372 chr4:70148376 nonsynonymous SNV 0.282 3 25 hm5C_associated_SNPs_118009 0 0 0 0 1 UGT2B28 chr4:70148380 5'GT 70148380 Upstream 5bp
chrX 153421855 153421855 1 + C G LGG 153421851 + 153421831 153421871 41 GGTGGTGGTGATGATCTTTGCGTACTGCGTCTGCTGGGGAC GGTGGTGGTGATGATCTTTGCGTAGTGCGTCTGCTGGGGAC < 41bp 0.429474697311201 0.723738992729006 0.11503667 0.26575485 prediction 0.447477985458011 Functional Gain - OPN1LW ENSG00000102076 CDS Human protein_coding chrX:153421851 chrX:153421855 stopgain 0.022 1 25 hm5C_associated_SNPs_118010 0 0 0 0 1 OPN1LW chrX:153421769 3'AG 153421769 Downstream 87bp
chr19 1081908 1081908 1 + C A CESC 1081904 + 1081884 1081924 41 ACGGCAAGGAGCTGGTCGAGCTGTCGCAGGCCTCGCCCCAC ACGGCAAGGAGCTGGTCGAGCTGTAGCAGGCCTCGCCCCAC < 41bp 0.310373285387123 0.723727317680539 0.2575572 0.5709915 prediction 0.447454635361079 Functional Gain - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1081904 chr19:1081908 stopgain 0.760 1 25 hm5C_associated_SNPs_118013 0 0 1 0 2 ARHGAP45 chr19:1081823 3'AG 1081823 Downstream 86bp
chr19 1081908 1081908 1 + C A CESC 1081904 + 1081884 1081924 41 ACGGCAAGGAGCTGGTCGAGCTGTCGCAGGCCTCGCCCCAC ACGGCAAGGAGCTGGTCGAGCTGTAGCAGGCCTCGCCCCAC < 41bp 0.310373285387123 0.723727317680539 0.2575572 0.5709915 prediction 0.447454635361079 Functional Gain - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1081904 chr19:1081908 stopgain 0.760 1 25 hm5C_associated_SNPs_118013 0 0 1 0 2 ARHGAP45 chr19:1081960 5'GT 1081960 Upstream 53bp
chrX 69421804 69421804 1 + C T COAD 69421803 + 69421783 69421823 41 CCAGAAAGGCTCAGGCAATGCCGTGGTTATTGTGGTGGGTG CCAGAAAGGCTCAGGCAATGCTGTGGTTATTGTGGTGGGTG < 41bp 0.485703623951729 0.723726493669712 0.29793504 0.17073748 prediction 0.447452987339424 Functional Gain - DGAT2L6 ENSG00000184210 CDS Human protein_coding chrX:69421803 chrX:69421804 synonymous SNV . 0 22 hm5C_associated_SNPs_118014 0 0 0 0 1 DGAT2L6 chrX:69421740 3'AG 69421740 Downstream 65bp
chr1 201289495 201289495 1 + C A rs74136386 201289491 + 201289471 201289511 41 GTCCAGAACTGTGTAGCGGCCAGCCGCTGTGACGACAAGGT GTCCAGAACTGTGTAGCGGCCAGCAGCTGTGACGACAAGGT < 41bp 0.298454363314047 0.723725558877519 0.18958673 0.3909567 prediction 0.447451117755037 Functional Gain - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201289491 chr1:201289495 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_118015 0 0 0 0 1 PKP1 chr1:201289509 5'GT 201289509 Upstream 15bp
chr19 55898060 55898060 1 + C A UCEC 55898059 + 55898039 55898079 41 GGTGGTCATTAAGCGGAGATCCGGTGAGTTTTGTCTGGTTT GGTGGTCATTAAGCGGAGATCAGGTGAGTTTTGTCTGGTTT < 41bp 0.611934057738793 0.83565070508421 0.45040655 0.85439533 prediction 0.447433294690835 Functional Gain - RPL28 ENSG00000108107 CDS Human protein_coding chr19:55898059 chr19:55898060 synonymous SNV . 0 22 hm5C_associated_SNPs_118018 0 0 1 0 1 RPL28 chr19:55898061 5'GT 55898061 Upstream 2bp
chr19 15164599 15164599 1 + C T SARC 15164598 + 15164578 15164618 41 CCATCGATTCCCGGGAAGATCCCGTCAGTTGTGCCTTCGTG CCATCGATTCCCGGGAAGATCTCGTCAGTTGTGCCTTCGTG < 41bp 0.562543431945275 0.786254150453822 0.17882764 0.28050917 prediction 0.447421437017093 Functional Gain - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15164598 chr19:15164599 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_118021 0 0 0 0 1 CASP14 chr19:15164544 3'AG 15164544 Downstream 56bp
chr4 151153924 151153924 1 + A G UCEC 151153921 + 151153901 151153941 41 TGTACAACTTAGCCAATGCCCTCAGGTATCTCCATGGCCTC TGTACAACTTAGCCAATGCCCTCGGGTATCTCCATGGCCTC < 41bp 0.562038827708582 0.78574421136146 0.11053386 0.21303117 prediction 0.447410767305756 Functional Gain - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151153921 chr4:151153924 nonsynonymous SNV 0.991 1 24 hm5C_associated_SNPs_118025 0 0 0 0 1 DCLK2 chr4:151153980 5'GT 151153980 Upstream 57bp
chr1 236558948 236558948 1 + C G rs200100313 236558944 + 236558924 236558964 41 GCCGCCATGGCTTCACCGGACGACCCTCTGCGCGCAGGTAA GCCGCCATGGCTTCACCGGACGACGCTCTGCGCGCAGGTAA < 41bp 0.433972119007255 0.723702805133127 0.06432563 0.08221185 prediction 0.447405610266254 Functional Gain - EDARADD ENSG00000186197 CDS Human protein_coding chr1:236558944 chr1:236558948 nonsynonymous SNV 0.501 4 25 hm5C_associated_SNPs_118027 0 0 0 0 1 EDARADD chr1:236558960 5'GT 236558960 Upstream 13bp
chr16 88729788 88729788 1 + C A rs3794628 88729784 + 88729764 88729804 41 GCGCCTGGCGTCCGCGTCGGCGATCCGGGGTCTGGGCGCGG GCGCCTGGCGTCCGCGTCGGCGATACGGGGTCTGGGCGCGG < 41bp 0.375328025480876 0.723697414834195 0.42757824 0.78440744 prediction 0.447394829668391 Functional Gain - SNAI3-AS1 ENSG00000260630 ncRNA_exonic Human antisense chr16:88729784 chr16:88729788 . . 0 25 hm5C_associated_SNPs_118031 0 0 1 0 1 SNAI3-AS1 chr16:88729808 5'GT 88729808 Upstream 21bp
chrX 18797239 18797239 1 + C A UCEC 18797238 + 18797218 18797258 41 TGTGTGAGTTTTCTTGTCTACCCCAATGACCTGCACTTGAA TGTGTGAGTTTTCTTGTCTACACCAATGACCTGCACTTGAA < 41bp 0.566389371306784 0.790080280667227 0.015560269 0.0432508 prediction 0.447381818720886 Functional Gain - PPEF1 ENSG00000086717 CDS Human protein_coding chrX:18797238 chrX:18797239 nonsynonymous SNV 0.818 3 22 hm5C_associated_SNPs_118034 0 0 0 0 1 PPEF1 chrX:18797294 5'GT 18797294 Upstream 56bp
chr16 86545144 86545144 1 + C A rs144309953 86545140 + 86545120 86545160 41 CCAGAACAGCCACAACGCCCCAGCCGAGCTGCAAGGTGAGT CCAGAACAGCCACAACGCCCCAGCAGAGCTGCAAGGTGAGT < 41bp 0.326103008725345 0.723688976033107 0.2099382 0.16723087 prediction 0.447377952066214 Functional Gain - FOXF1 ENSG00000103241 CDS Human protein_coding chr16:86545140 chr16:86545144 synonymous SNV . 0 25 hm5C_associated_SNPs_118035 0 0 0 0 1 FOXF1 chr16:86545154 5'GT 86545154 Upstream 11bp
chr1 186839648 186839648 1 + C A LIHC 186839644 + 186839624 186839664 41 ACAAAGGGGGCCTTTGGTGACATGCGTAAGTGCCCTTTTTT ACAAAGGGGGCCTTTGGTGACATGAGTAAGTGCCCTTTTTT < 41bp 0.329763467489251 0.723688141218782 0.45511347 0.58670354 prediction 0.447376282437564 Functional Gain - PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186839644 chr1:186839648 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_118036 0 0 0 0 2 PLA2G4A chr1:186839567 3'AG 186839567 Downstream 82bp
chr1 186839648 186839648 1 + C A LIHC 186839644 + 186839624 186839664 41 ACAAAGGGGGCCTTTGGTGACATGCGTAAGTGCCCTTTTTT ACAAAGGGGGCCTTTGGTGACATGAGTAAGTGCCCTTTTTT < 41bp 0.329763467489251 0.723688141218782 0.45511347 0.58670354 prediction 0.447376282437564 Functional Gain - PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186839644 chr1:186839648 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_118036 0 0 0 0 2 PLA2G4A chr1:186839648 5'GT 186839648 Upstream 1bp
chr17 7351949 7351949 1 + C T SKCM 7351948 + 7351928 7351968 41 CCTCTCGGCTAATCCAGCCTCCAGGCGATCCTAGGGGAGGG CCTCTCGGCTAATCCAGCCTCTAGGCGATCCTAGGGGAGGG < 41bp 0.470836624461818 0.723679518760629 0.8902581 0.56738126 prediction 0.447359037521257 Functional Gain - CHRNB1 ENSG00000170175 CDS Human protein_coding chr17:7351948 chr17:7351949 nonsynonymous SNV 0.530 0 22 hm5C_associated_SNPs_118039 0 0 0 0 1 CHRNB1 chr17:7351898 3'AG 7351898 Downstream 52bp
chr8 15508249 15508249 1 + T G STAD 15508246 + 15508226 15508266 41 AAATACTGGCGAACTCCTGGCGCTATTCATCTGCTTTTTGT AAATACTGGCGAACTCCTGGCGCGATTCATCTGCTTTTTGT < 41bp 0.346597484144898 0.723677964691119 0.045183152 0.10695234 prediction 0.447355929382239 Functional Gain - TUSC3 ENSG00000104723 CDS Human protein_coding chr8:15508246 chr8:15508249 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_118041 0 0 1 0 2 TUSC3 chr8:15508206 3'AG 15508206 Downstream 44bp
chr8 15508249 15508249 1 + T G STAD 15508246 + 15508226 15508266 41 AAATACTGGCGAACTCCTGGCGCTATTCATCTGCTTTTTGT AAATACTGGCGAACTCCTGGCGCGATTCATCTGCTTTTTGT < 41bp 0.346597484144898 0.723677964691119 0.045183152 0.10695234 prediction 0.447355929382239 Functional Gain - TUSC3 ENSG00000104723 CDS Human protein_coding chr8:15508246 chr8:15508249 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_118041 0 0 1 0 2 TUSC3 chr8:15508323 5'GT 15508323 Upstream 75bp
chr3 47454066 47454066 1 + T C UVM 47454064 + 47454044 47454084 41 TGGAGCAGGTCCTGCAGCGCCATGGTGTGCCTCCTCCATGC TGGAGCAGGTCCTGCAGCGCCACGGTGTGCCTCCTCCATGC < 41bp 0.607294634335612 0.830971357099939 0.20718357 0.3299301 prediction 0.447353445528653 Functional Gain - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47454064 chr3:47454066 synonymous SNV . 0 23 hm5C_associated_SNPs_118042 0 0 1 0 2 PTPN23 chr3:47454004 3'AG 47454004 Downstream 63bp
chr3 47454066 47454066 1 + T C UVM 47454064 + 47454044 47454084 41 TGGAGCAGGTCCTGCAGCGCCATGGTGTGCCTCCTCCATGC TGGAGCAGGTCCTGCAGCGCCACGGTGTGCCTCCTCCATGC < 41bp 0.607294634335612 0.830971357099939 0.20718357 0.3299301 prediction 0.447353445528653 Functional Gain - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47454064 chr3:47454066 synonymous SNV . 0 23 hm5C_associated_SNPs_118042 0 0 1 0 2 PTPN23 chr3:47454117 5'GT 47454117 Upstream 52bp
chr16 58542880 58542880 1 + C T SKCM 58542879 + 58542859 58542899 41 TCCTCAGGTGGAGTGCAACTCCAAACTGGACCCGACCACTA TCCTCAGGTGGAGTGCAACTCTAAACTGGACCCGACCACTA < 41bp 0.576353330622215 0.800027605712761 0.3889038 0.28272557 prediction 0.447348550181092 Functional Gain - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58542879 chr16:58542880 synonymous SNV . 0 22 hm5C_associated_SNPs_118043 0 0 1 0 2 NDRG4 chr16:58542866 3'AG 58542866 Downstream 15bp
chr16 58542880 58542880 1 + C T SKCM 58542879 + 58542859 58542899 41 TCCTCAGGTGGAGTGCAACTCCAAACTGGACCCGACCACTA TCCTCAGGTGGAGTGCAACTCTAAACTGGACCCGACCACTA < 41bp 0.576353330622215 0.800027605712761 0.3889038 0.28272557 prediction 0.447348550181092 Functional Gain - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58542879 chr16:58542880 synonymous SNV . 0 22 hm5C_associated_SNPs_118043 0 0 1 0 2 NDRG4 chr16:58542913 5'GT 58542913 Upstream 34bp
chr2 98354471 98354471 1 + C T COAD 98354470 + 98354450 98354490 41 TTGAGCAGAAGATGAAAGGGCCGGAGGTCATGGCCTTCATC TTGAGCAGAAGATGAAAGGGCTGGAGGTCATGGCCTTCATC < 41bp 0.523567946403518 0.747237369510229 0.6852005 0.41903645 prediction 0.447338846213421 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98354470 chr2:98354471 nonsynonymous SNV 0.623 2 22 hm5C_associated_SNPs_118045 0 0 0 0 2 ZAP70 chr2:98354458 3'AG 98354458 Downstream 14bp
chr2 98354471 98354471 1 + C T COAD 98354470 + 98354450 98354490 41 TTGAGCAGAAGATGAAAGGGCCGGAGGTCATGGCCTTCATC TTGAGCAGAAGATGAAAGGGCTGGAGGTCATGGCCTTCATC < 41bp 0.523567946403518 0.747237369510229 0.6852005 0.41903645 prediction 0.447338846213421 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98354470 chr2:98354471 nonsynonymous SNV 0.623 2 22 hm5C_associated_SNPs_118045 0 0 0 0 2 ZAP70 chr2:98354570 5'GT 98354570 Upstream 100bp
chr2 86433387 86433387 1 + A G UCEC 86433384 + 86433364 86433404 41 TTACCACATCTGAGAGAAACCTGACATGTGGGCATACCTCA TTACCACATCTGAGAGAAACCTGGCATGTGGGCATACCTCA < 41bp 0.540469745868531 0.764135657218767 0.17579925 0.25557262 prediction 0.447331822700472 Functional Gain - MRPL35 ENSG00000132313 CDS Human protein_coding chr2:86433384 chr2:86433387 nonsynonymous SNV 0.332 0 24 hm5C_associated_SNPs_118046 0 0 0 0 1 MRPL35 chr2:86433418 5'GT 86433418 Upstream 32bp
chr5 68565063 68565063 1 + T C UCEC 68565061 + 68565041 68565081 41 TTTTGCCAGGAGATTCAGACCTTGATCAGCTAACAAGAATA TTTTGCCAGGAGATTCAGACCTCGATCAGCTAACAAGAATA < 41bp 0.646993396130445 0.870656736328458 0.23918912 0.9080926 prediction 0.447326680396025 Functional Gain - CDK7 ENSG00000134058 CDS Human protein_coding chr5:68565061 chr5:68565063 synonymous SNV . 0 23 hm5C_associated_SNPs_118048 0 0 1 0 2 CDK7 chr5:68565034 3'AG 68565034 Downstream 30bp
chr5 68565063 68565063 1 + T C UCEC 68565061 + 68565041 68565081 41 TTTTGCCAGGAGATTCAGACCTTGATCAGCTAACAAGAATA TTTTGCCAGGAGATTCAGACCTCGATCAGCTAACAAGAATA < 41bp 0.646993396130445 0.870656736328458 0.23918912 0.9080926 prediction 0.447326680396025 Functional Gain - CDK7 ENSG00000134058 CDS Human protein_coding chr5:68565061 chr5:68565063 synonymous SNV . 0 23 hm5C_associated_SNPs_118048 0 0 1 0 2 CDK7 chr5:68565120 5'GT 68565120 Upstream 58bp
chr15 45695670 45695670 1 + A G UCEC 45695667 + 45695647 45695687 41 TGTGGGAGCCACTAACCGGCCGGACGCTCTAGACCCAGCGC TGTGGGAGCCACTAACCGGCCGGGCGCTCTAGACCCAGCGC < 41bp 0.556932570495413 0.780586638027298 0.24726513 0.70949584 prediction 0.44730813506377 Functional Gain - SPATA5L1 ENSG00000171763 CDS Human protein_coding chr15:45695667 chr15:45695670 nonsynonymous SNV 0.868 4 24 hm5C_associated_SNPs_118050 0 0 1 0 1 SPATA5L1 chr15:45695716 5'GT 45695716 Upstream 47bp
chr15 101438383 101438383 1 + C G BRCA 101438379 + 101438359 101438399 41 GAACCCCTGCATCGTGTGTGCGGACGCTGACTGTGAGTCTC GAACCCCTGCATCGTGTGTGCGGAGGCTGACTGTGAGTCTC < 41bp 0.636706417306318 0.860356197057477 0.6875299 0.9242314 prediction 0.447299559502317 Functional Gain - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101438379 chr15:101438383 nonsynonymous SNV 0.025 4 25 hm5C_associated_SNPs_118053 0 0 0 0 2 ALDH1A3 chr15:101438288 3'AG 101438288 Downstream 96bp
chr15 101438383 101438383 1 + C G BRCA 101438379 + 101438359 101438399 41 GAACCCCTGCATCGTGTGTGCGGACGCTGACTGTGAGTCTC GAACCCCTGCATCGTGTGTGCGGAGGCTGACTGTGAGTCTC < 41bp 0.636706417306318 0.860356197057477 0.6875299 0.9242314 prediction 0.447299559502317 Functional Gain - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101438379 chr15:101438383 nonsynonymous SNV 0.025 4 25 hm5C_associated_SNPs_118053 0 0 0 0 2 ALDH1A3 chr15:101438390 5'GT 101438390 Upstream 8bp
chr14 60582522 60582522 1 + A G UCEC 60582519 + 60582499 60582539 41 GTGTCTGTCTGTATTGGATTCACAAGAGCCTTTAGAATGGT GTGTCTGTCTGTATTGGATTCACGAGAGCCTTTAGAATGGT < 41bp 0.532796337735181 0.756445159367893 0.030159384 0.10616559 prediction 0.447297643265423 Functional Gain - PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60582519 chr14:60582522 synonymous SNV . 0 24 hm5C_associated_SNPs_118055 0 0 0 0 2 PCNX4 chr14:60582437 3'AG 60582437 Downstream 86bp
chr14 60582522 60582522 1 + A G UCEC 60582519 + 60582499 60582539 41 GTGTCTGTCTGTATTGGATTCACAAGAGCCTTTAGAATGGT GTGTCTGTCTGTATTGGATTCACGAGAGCCTTTAGAATGGT < 41bp 0.532796337735181 0.756445159367893 0.030159384 0.10616559 prediction 0.447297643265423 Functional Gain - PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60582519 chr14:60582522 synonymous SNV . 0 24 hm5C_associated_SNPs_118055 0 0 0 0 2 PCNX4 chr14:60582537 5'GT 60582537 Upstream 16bp
chr3 9786134 9786134 1 + C T SKCM 9786133 + 9786113 9786153 41 GCGCAAGCGGGGTAGGAGCCCCCGGCCCAGTTCGAGCTCAG GCGCAAGCGGGGTAGGAGCCCTCGGCCCAGTTCGAGCTCAG < 41bp 0.467332952686119 0.723643852187123 0.36137855 0.24155405 prediction 0.447287704374245 Functional Gain - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9786133 chr3:9786134 synonymous SNV . 0 22 hm5C_associated_SNPs_118058 0 0 1 0 1 BRPF1 chr3:9786192 5'GT 9786192 Upstream 59bp
chr2 36740766 36740766 1 + T C STAD 36740764 + 36740744 36740784 41 TCACCGTGGATGGTCATCATCATAAAAATGAGGAGAGCTGG TCACCGTGGATGGTCATCATCACAAAAATGAGGAGAGCTGG < 41bp 0.436695544878452 0.723638136956883 0.34057832 0.23712984 prediction 0.447276273913767 Functional Gain - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36740764 chr2:36740766 synonymous SNV . 0 23 hm5C_associated_SNPs_118062 0 0 1 0 1 CRIM1 chr2:36740699 3'AG 36740699 Downstream 68bp
chr8 11637456 11637456 1 + C A LAML 11637455 + 11637435 11637475 41 GGGACTGGAGGGACCCTTCCCCGAGGTAATGGTGTGGCCAT GGGACTGGAGGGACCCTTCCCAGAGGTAATGGTGTGGCCAT < 41bp 0.605748685081597 0.829384430066974 0.8965052 0.91757345 prediction 0.447271489970754 Functional Gain - NEIL2 ENSG00000154328 CDS Human protein_coding chr8:11637455 chr8:11637456 nonsynonymous SNV 0.047 4 22 hm5C_associated_SNPs_118065 0 0 0 0 1 NEIL2 chr8:11637459 5'GT 11637459 Upstream 4bp
chr3 129233371 129233371 1 + C T SKCM 129233370 + 129233350 129233390 41 GAGCTGGGTACCCTGACCATCCGCGCCAAGCCCTTCCACGA GAGCTGGGTACCCTGACCATCTGCGCCAAGCCCTTCCACGA < 41bp 0.561827564096102 0.785461150551819 0.3288753 0.29548758 prediction 0.447267172911433 Functional Gain - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129233370 chr3:129233371 nonsynonymous SNV 0.981 4 22 hm5C_associated_SNPs_118067 0 0 0 0 1 IFT122 chr3:129233397 5'GT 129233397 Upstream 27bp
chr1 210267703 210267703 1 + T C PRAD 210267700 + 210267680 210267720 41 GAGAATGAGAAGAACACCCCCGCTGGATGAATTGCAGCCAC GAGAATGAGAAGAACACCCCCGCCGGATGAATTGCAGCCAC < 41bp 0.51606556423375 0.739694694447291 0.04018724 0.15660179 prediction 0.447258260427082 Functional Gain - SYT14 ENSG00000143469 CDS Human protein_coding chr1:210267700 chr1:210267703 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_118068 0 0 0 0 1 SYT14 chr1:210267667 3'AG 210267667 Downstream 37bp
chr7 143027907 143027907 1 + T G LUAD 143027904 + 143027884 143027924 41 GGTCACCTCCACCTACTTTGCTGTTCGGAACTACTGGAGAG GGTCACCTCCACCTACTTTGCTGGTCGGAACTACTGGAGAG < 41bp 0.31878569132937 0.72362739781785 0.09358525 0.25163156 prediction 0.447254795635701 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143027904 chr7:143027907 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_118070 0 0 0 2 1 CLCN1 chr7:143027865 3'AG 143027865 Downstream 43bp
chr8 38928862 38928862 1 + A G BLCA 38928859 + 38928839 38928879 41 TTGTTTCATTGAAGTGAATTCTAAAGGTGACAGATTTGGCA TTGTTTCATTGAAGTGAATTCTAGAGGTGACAGATTTGGCA < 41bp 0.497797879068559 0.723615463000621 0.48776355 0.7286331 prediction 0.447230926001241 Functional Gain - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38928859 chr8:38928862 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_118073 0 0 1 0 2 ADAM9 chr8:38928817 3'AG 38928817 Downstream 46bp
chr8 38928862 38928862 1 + A G BLCA 38928859 + 38928839 38928879 41 TTGTTTCATTGAAGTGAATTCTAAAGGTGACAGATTTGGCA TTGTTTCATTGAAGTGAATTCTAGAGGTGACAGATTTGGCA < 41bp 0.497797879068559 0.723615463000621 0.48776355 0.7286331 prediction 0.447230926001241 Functional Gain - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38928859 chr8:38928862 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_118073 0 0 1 0 2 ADAM9 chr8:38928922 5'GT 38928922 Upstream 61bp
chr3 38350471 38350471 1 + C T rs146067679 38350470 + 38350450 38350490 41 GAGTGGTTAGTGGGTGAGCACCGGGCCCATGCCATTATCCT GAGTGGTTAGTGGGTGAGCACTGGGCCCATGCCATTATCCT < 41bp 0.493967946508689 0.723614597108851 0.2001298 0.06233096 prediction 0.447229194217701 Functional Gain - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38350470 chr3:38350471 nonsynonymous SNV 0.663 5 22 hm5C_associated_SNPs_118074 0 0 0 0 1 SLC22A14 chr3:38350445 3'AG 38350445 Downstream 27bp
chr2 120003145 120003145 1 + C T SKCM 120003144 + 120003124 120003164 41 GATAGTAGCCTTGCCAAGGTCCCCGATGAGGCCCCCAAAGT GATAGTAGCCTTGCCAAGGTCTCCGATGAGGCCCCCAAAGT < 41bp 0.459080031590886 0.723614450605572 0.023881912 0.06985536 prediction 0.447228901211145 Functional Gain - STEAP3 ENSG00000115107 CDS Human protein_coding chr2:120003144 chr2:120003145 nonsynonymous SNV 0.010 0 22 hm5C_associated_SNPs_118075 0 0 1 0 1 STEAP3 chr2:120003065 3'AG 120003065 Downstream 81bp
chr1 15789916 15789916 1 + T A LUAD 15789912 + 15789892 15789932 41 CCCTGCTCAAACTGGCTAACCCCGTCTCCCTCACCGACAAG CCCTGCTCAAACTGGCTAACCCCGACTCCCTCACCGACAAG < 41bp 0.395720631988597 0.723613931065209 0.16861811 0.2702701 prediction 0.447227862130419 Functional Gain - CELA2A ENSG00000142615 CDS Human protein_coding chr1:15789912 chr1:15789916 nonsynonymous SNV 0.013 4 25 hm5C_associated_SNPs_118076 0 0 0 0 1 CELA2A chr1:15789881 3'AG 15789881 Downstream 36bp
chr11 70194447 70194447 1 + C T LUSC 70194446 + 70194426 70194466 41 CGCTTGCTAGCTCCTCCCCTCCGGGCAGTGGGCGCTCCACC CGCTTGCTAGCTCCTCCCCTCTGGGCAGTGGGCGCTCCACC < 41bp 0.561432961050041 0.785039920832596 0.9310696 0.37778378 prediction 0.44721391956511 Functional Gain - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70194446 chr11:70194447 nonsynonymous SNV 0.857 4 22 hm5C_associated_SNPs_118079 0 0 1 0 1 PPFIA1 chr11:70194526 5'GT 70194526 Upstream 80bp
chr1 1455603 1455603 1 + C T STAD 1455602 + 1455582 1455622 41 GGCCCGGGCGCGCGCCAAGGCCGAGCGGGAGAATGCAGACA GGCCCGGGCGCGCGCCAAGGCTGAGCGGGAGAATGCAGACA < 41bp 0.489824050806808 0.72360631457362 0.4823466 0.18945974 prediction 0.447212629147241 Functional Gain - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1455602 chr1:1455603 synonymous SNV . 0 22 hm5C_associated_SNPs_118080 0 0 1 0 2 ATAD3A chr1:1455521 3'AG 1455521 Downstream 83bp
chr1 1455603 1455603 1 + C T STAD 1455602 + 1455582 1455622 41 GGCCCGGGCGCGCGCCAAGGCCGAGCGGGAGAATGCAGACA GGCCCGGGCGCGCGCCAAGGCTGAGCGGGAGAATGCAGACA < 41bp 0.489824050806808 0.72360631457362 0.4823466 0.18945974 prediction 0.447212629147241 Functional Gain - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1455602 chr1:1455603 synonymous SNV . 0 22 hm5C_associated_SNPs_118080 0 0 1 0 2 ATAD3A chr1:1455686 5'GT 1455686 Upstream 84bp
chrX 1497560 1497560 1 + C T COAD 1497559 + 1497539 1497579 41 CCTTTACCCCTAGAGTGCGACCAGGAGGAGGGCGCAAACAC CCTTTACCCCTAGAGTGCGACTAGGAGGAGGGCGCAAACAC < 41bp 0.539326371685217 0.762925369191641 0.23910892 0.28254697 prediction 0.447197995012849 Functional Gain - IL3RA ENSG00000185291 CDS Human protein_coding chrX:1497559 chrX:1497560 stopgain 0.003 0 22 hm5C_associated_SNPs_118082 0 0 0 0 1 IL3RA chrX:1497657 5'GT 1497657 Upstream 98bp
chr3 64547413 64547413 1 - A C COAD 64547416 - 64547396 64547436 41 TCTTCTTAGTGCTCTGTGTCCTGTGGCCGAGGCGTACAGCA TCTTCTTAGTGCTCTGTGTCCTGGGGCCGAGGCGTACAGCA < 41bp 0.331840370760853 0.72359766835458 0.12994224 0.6817603 prediction 0.447195336709159 Functional Gain - ADAMTS9 ENSG00000163638 CDS Human protein_coding chr3:64547416 chr3:64547413 nonsynonymous SNV 0.988 5 24 hm5C_associated_SNPs_118084 0 0 0 0 1 ADAMTS9 chr3:64547427 3'AG 64547427 Downstream 15bp
chr16 31226130 31226130 1 + C T PRAD 31226129 + 31226109 31226149 41 GCCTGCAGCTGTTCGACGCGCCCGTGACAGCCGAGTGCGGC GCCTGCAGCTGTTCGACGCGCTCGTGACAGCCGAGTGCGGC < 41bp 0.48063555461173 0.723595857012308 0.092609346 0.15091833 prediction 0.447191714024617 Functional Gain - TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31226129 chr16:31226130 nonsynonymous SNV 0.375 4 22 hm5C_associated_SNPs_118085 0 0 0 0 1 TRIM72 chr16:31226053 3'AG 31226053 Downstream 78bp
chr2 170377390 170377390 1 + T A UCEC 170377386 + 170377366 170377406 41 CCTAGATGGGATGTAATGACCGAATTTCCCCAAGAAAGAAG CCTAGATGGGATGTAATGACCGAAATTCCCCAAGAAAGAAG < 41bp 0.409308749734133 0.723595189964956 0.21889636 0.30584854 prediction 0.447190379929912 Functional Gain - KLHL41 ENSG00000163093;ENSG00000239474;ENSG00000251569 CDS Human other chr2:170377386 chr2:170377390 nonsynonymous SNV 0.973 4 25 hm5C_associated_SNPs_118086 0 0 0 0 1 KLHL41 chr2:170377371 3'AG 170377371 Downstream 20bp
chr8 143921882 143921882 1 + T C rs34441899 143921880 + 143921860 143921900 41 CTCTTTGCCTTACTCCTAGCCATGGAGCTCCCATTGGTGGC CTCTTTGCCTTACTCCTAGCCACGGAGCTCCCATTGGTGGC < 41bp 0.565217988404247 0.788810215278656 0.27166942 0.26809344 prediction 0.447184453748819 Functional Gain - GML ENSG00000104499 CDS Human protein_coding chr8:143921880 chr8:143921882 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_118087 0 0 0 0 1 GML chr8:143921832 3'AG 143921832 Downstream 51bp
chr16 19126041 19126041 1 + C G BLCA 19126037 + 19126017 19126057 41 TCCCCGTCTGGAGGGTCACGCCGCCTTCTCCTCGAGACACT TCCCCGTCTGGAGGGTCACGCCGCGTTCTCCTCGAGACACT < 41bp 0.434609975082639 0.723565132083388 0.16363448 0.23670104 prediction 0.447130264166776 Functional Gain - ITPRIPL2 ENSG00000205730;ENSG00000261427 CDS Human other chr16:19126037 chr16:19126041 nonsynonymous SNV 0.089 0 25 hm5C_associated_SNPs_118096 0 0 0 0 1 ITPRIPL2 chr16:19125963 3'AG 19125963 Downstream 79bp
chr13 24890243 24890243 1 + C T UCEC 24890242 + 24890222 24890262 41 CCCTGGAATCCCTGGGAACCCCGGTCACAATGGTCTGCCTG CCCTGGAATCCCTGGGAACCCTGGTCACAATGGTCTGCCTG < 41bp 0.540898999794682 0.764461953407444 0.15762481 0.07160035 prediction 0.447125907225524 Functional Gain - C1QTNF9 ENSG00000240654 CDS Human protein_coding chr13:24890242 chr13:24890243 synonymous SNV . 0 22 hm5C_associated_SNPs_118097 0 0 0 0 1 C1QTNF9 chr13:24890307 5'GT 24890307 Upstream 65bp
chrX 48673388 48673388 1 + C T STAD 48673387 + 48673367 48673407 41 AGGGTGAGATGGCCGCCACTCCGGCAGGGTTCGCCCAGCTA AGGGTGAGATGGCCGCCACTCTGGCAGGGTTCGCCCAGCTA < 41bp 0.532233727823328 0.755795987797078 0.23129752 0.07656875 prediction 0.447124519947502 Functional Gain - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48673387 chrX:48673388 nonsynonymous SNV 0.970 4 22 hm5C_associated_SNPs_118098 0 0 1 0 1 HDAC6 chrX:48673458 5'GT 48673458 Upstream 71bp
chr16 56857697 56857697 1 + C T COAD 56857696 + 56857676 56857716 41 GCAACGGATGCCCTGAAGAACCGCAGCAGCGTGGAAGTGCG GCAACGGATGCCCTGAAGAACTGCAGCAGCGTGGAAGTGCG < 41bp 0.607886566839374 0.831436328435357 0.32923093 0.42533535 prediction 0.447099523191965 Functional Gain - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56857696 chr16:56857697 nonsynonymous SNV 0.991 4 22 hm5C_associated_SNPs_118104 0 0 1 0 2 NUP93 chr16:56857619 3'AG 56857619 Downstream 79bp
chr16 56857697 56857697 1 + C T COAD 56857696 + 56857676 56857716 41 GCAACGGATGCCCTGAAGAACCGCAGCAGCGTGGAAGTGCG GCAACGGATGCCCTGAAGAACTGCAGCAGCGTGGAAGTGCG < 41bp 0.607886566839374 0.831436328435357 0.32923093 0.42533535 prediction 0.447099523191965 Functional Gain - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56857696 chr16:56857697 nonsynonymous SNV 0.991 4 22 hm5C_associated_SNPs_118104 0 0 1 0 2 NUP93 chr16:56857758 5'GT 56857758 Upstream 62bp
chr18 56651291 56651291 1 + A G COAD 56651288 + 56651268 56651308 41 TCACTCAACCACTGAAAAAGCTGAAAATCAATGTTTTTAAG TCACTCAACCACTGAAAAAGCTGGAAATCAATGTTTTTAAG < 41bp 0.500972287574582 0.724517299109191 0.25112528 0.1250833 prediction 0.447090023069217 Functional Gain - ZNF532 ENSG00000074657 CDS Human protein_coding chr18:56651288 chr18:56651291 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_118106 0 0 0 0 1 ZNF532 chr18:56651204 3'AG 56651204 Downstream 88bp
chrX 79279655 79279655 1 + A G PAAD 79279652 + 79279632 79279672 41 GATGTGGTGCCGGTGGATTCCAAACGCTATAGGTAATGGGC GATGTGGTGCCGGTGGATTCCAAGCGCTATAGGTAATGGGC < 41bp 0.481580845920364 0.723542582995249 0.39821208 0.36279294 prediction 0.447085165990498 Functional Gain - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79279652 chrX:79279655 synonymous SNV . 0 24 hm5C_associated_SNPs_118108 0 0 0 0 2 TBX22 chrX:79279562 3'AG 79279562 Downstream 94bp
chrX 79279655 79279655 1 + A G PAAD 79279652 + 79279632 79279672 41 GATGTGGTGCCGGTGGATTCCAAACGCTATAGGTAATGGGC GATGTGGTGCCGGTGGATTCCAAGCGCTATAGGTAATGGGC < 41bp 0.481580845920364 0.723542582995249 0.39821208 0.36279294 prediction 0.447085165990498 Functional Gain - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79279652 chrX:79279655 synonymous SNV . 0 24 hm5C_associated_SNPs_118108 0 0 0 0 2 TBX22 chrX:79279663 5'GT 79279663 Upstream 9bp
chr17 32598725 32598725 1 + C A COAD 32598724 + 32598704 32598744 41 TCTGCTCCACAGCTTCAAGACCAAACTGGACAAGGAGATCT TCTGCTCCACAGCTTCAAGACAAAACTGGACAAGGAGATCT < 41bp 0.498318335903995 0.723534084774498 0.06996766 0.04677993 prediction 0.447068169548996 Functional Gain - CCL7 ENSG00000108688 CDS Human protein_coding chr17:32598724 chr17:32598725 nonsynonymous SNV 0.341 0 22 hm5C_associated_SNPs_118110 0 0 0 1 1 CCL7 chr17:32598716 3'AG 32598716 Downstream 10bp
chr19 48967468 48967468 1 + C T SKCM 48967467 + 48967447 48967487 41 ACCCCAGAGGGTGAGTACATCCCGCTGGACCACCAGGATGT ACCCCAGAGGGTGAGTACATCTCGCTGGACCACCAGGATGT < 41bp 0.474243335587461 0.723529892131505 0.3448557 0.35632414 prediction 0.447059784263011 Functional Gain - KCNJ14 ENSG00000182324 CDS Human protein_coding chr19:48967467 chr19:48967468 nonsynonymous SNV 0.936 3 22 hm5C_associated_SNPs_118111 0 0 1 0 1 KCNJ14 chr19:48967438 3'AG 48967438 Downstream 31bp
chr4 160277248 160277248 1 + C T LUSC 160277247 + 160277227 160277267 41 ACAAACCTCAGTGGCATAAACCGAACGAGTCTGACCCGCGC ACAAACCTCAGTGGCATAAACTGAACGAGTCTGACCCGCGC < 41bp 0.585793241903168 0.809322984312281 0.8771568 0.8908483 prediction 0.447059484818226 Functional Gain - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160277247 chr4:160277248 nonsynonymous SNV 0.028 0 22 hm5C_associated_SNPs_118112 0 0 1 0 1 RAPGEF2 chr4:160277310 5'GT 160277310 Upstream 63bp
chr14 21467954 21467954 1 + C T SKCM 21467953 + 21467933 21467973 41 TGTATTTCTGCTGGTGTTTTCCTGGGAGCAGGGTTCATGCA TGTATTTCTGCTGGTGTTTTCTTGGGAGCAGGGTTCATGCA < 41bp 0.544895950168234 0.768422719904962 0.89892685 0.5643901 prediction 0.447053539473456 Functional Gain - SLC39A2 ENSG00000165794 CDS Human protein_coding chr14:21467953 chr14:21467954 synonymous SNV . 0 22 hm5C_associated_SNPs_118113 0 0 0 0 2 SLC39A2 chr14:21467901 3'AG 21467901 Downstream 54bp
chr14 21467954 21467954 1 + C T SKCM 21467953 + 21467933 21467973 41 TGTATTTCTGCTGGTGTTTTCCTGGGAGCAGGGTTCATGCA TGTATTTCTGCTGGTGTTTTCTTGGGAGCAGGGTTCATGCA < 41bp 0.544895950168234 0.768422719904962 0.89892685 0.5643901 prediction 0.447053539473456 Functional Gain - SLC39A2 ENSG00000165794 CDS Human protein_coding chr14:21467953 chr14:21467954 synonymous SNV . 0 22 hm5C_associated_SNPs_118113 0 0 0 0 2 SLC39A2 chr14:21468031 5'GT 21468031 Upstream 78bp
chr6 102074443 102074443 1 + C G LUAD 102074439 + 102074419 102074459 41 TACCCAGACTTCTCTTCACTCAGCCGTGCCATTTTAGACCT TACCCAGACTTCTCTTCACTCAGCGGTGCCATTTTAGACCT < 41bp 0.454843799665471 0.723523678210211 0.676199 0.91922325 prediction 0.447047356420422 Functional Gain - GRIK2 ENSG00000164418 CDS Human protein_coding chr6:102074439 chr6:102074443 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_118114 0 0 0 0 1 GRIK2 chr6:102074512 5'GT 102074512 Upstream 70bp
chr14 68038550 68038550 1 + C T UCEC 68038549 + 68038529 68038569 41 TGCAGCTCTCAGGCGAGTTTCCGAATCTCGGTCCCCTCCTC TGCAGCTCTCAGGCGAGTTTCTGAATCTCGGTCCCCTCCTC < 41bp 0.594776821299561 0.818292168087781 0.8859141 0.8820592 prediction 0.447030693576442 Functional Gain - PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68038549 chr14:68038550 stopgain 0.361 1 22 hm5C_associated_SNPs_118115 0 0 1 0 2 PLEKHH1 chr14:68038469 3'AG 68038469 Downstream 82bp
chr14 68038550 68038550 1 + C T UCEC 68038549 + 68038529 68038569 41 TGCAGCTCTCAGGCGAGTTTCCGAATCTCGGTCCCCTCCTC TGCAGCTCTCAGGCGAGTTTCTGAATCTCGGTCCCCTCCTC < 41bp 0.594776821299561 0.818292168087781 0.8859141 0.8820592 prediction 0.447030693576442 Functional Gain - PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68038549 chr14:68038550 stopgain 0.361 1 22 hm5C_associated_SNPs_118115 0 0 1 0 2 PLEKHH1 chr14:68038619 5'GT 68038619 Upstream 70bp
chr19 14031425 14031425 1 + C T HNSC 14031424 + 14031404 14031444 41 AAGCCCCACCCTCAAGAACTCCCCAGTCGGGATCAGCCCCA AAGCCCCACCCTCAAGAACTCTCCAGTCGGGATCAGCCCCA < 41bp 0.608149225047338 0.83166272066346 0.10728657 0.9468934 prediction 0.447026991232243 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14031424 chr19:14031425 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_118116 0 0 1 0 2 CC2D1A chr19:14031370 3'AG 14031370 Downstream 56bp
chr19 14031425 14031425 1 + C T HNSC 14031424 + 14031404 14031444 41 AAGCCCCACCCTCAAGAACTCCCCAGTCGGGATCAGCCCCA AAGCCCCACCCTCAAGAACTCTCCAGTCGGGATCAGCCCCA < 41bp 0.608149225047338 0.83166272066346 0.10728657 0.9468934 prediction 0.447026991232243 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14031424 chr19:14031425 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_118116 0 0 1 0 2 CC2D1A chr19:14031481 5'GT 14031481 Upstream 57bp
chr7 100466214 100466214 1 + C T HNSC 100466213 + 100466193 100466233 41 CTCCCTATGGGGGCCCCACTCCAGCCTCTTACACTACCGCC CTCCCTATGGGGGCCCCACTCTAGCCTCTTACACTACCGCC < 41bp 0.557037149614341 0.780547974006034 0.5521221 0.43488008 prediction 0.447021648783386 Functional Gain - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100466213 chr7:100466214 nonsynonymous SNV 0.905 3 22 hm5C_associated_SNPs_118117 0 0 1 2 1 TRIP6 chr7:100466117 3'AG 100466117 Downstream 98bp
chr1 167654716 167654716 1 + C A rs145561033 167654715 + 167654695 167654735 41 GTTCCCTCCCCCTGTTCCCCCCCAAGGTAGACCTGGGCCAG GTTCCCTCCCCCTGTTCCCCCACAAGGTAGACCTGGGCCAG < 41bp 0.602927851816675 0.826431868577376 0.08308184 0.27538842 prediction 0.447008033521402 Functional Gain - RCSD1 ENSG00000198771 CDS Human protein_coding chr1:167654715 chr1:167654716 nonsynonymous SNV 0.991 0 22 hm5C_associated_SNPs_118120 0 0 0 0 2 RCSD1 chr1:167654658 3'AG 167654658 Downstream 59bp
chr1 167654716 167654716 1 + C A rs145561033 167654715 + 167654695 167654735 41 GTTCCCTCCCCCTGTTCCCCCCCAAGGTAGACCTGGGCCAG GTTCCCTCCCCCTGTTCCCCCACAAGGTAGACCTGGGCCAG < 41bp 0.602927851816675 0.826431868577376 0.08308184 0.27538842 prediction 0.447008033521402 Functional Gain - RCSD1 ENSG00000198771 CDS Human protein_coding chr1:167654715 chr1:167654716 nonsynonymous SNV 0.991 0 22 hm5C_associated_SNPs_118120 0 0 0 0 2 RCSD1 chr1:167654747 5'GT 167654747 Upstream 32bp
chr2 26672953 26672953 1 + C T CESC 26672952 + 26672932 26672972 41 GAGGCTGGATGCCATCTTCTCCGTGAGTCCAACGGGGCTGG GAGGCTGGATGCCATCTTCTCTGTGAGTCCAACGGGGCTGG < 41bp 0.535079110363435 0.75857159254077 0.25761712 0.2229287 prediction 0.44698496435467 Functional Gain - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26672952 chr2:26672953 synonymous SNV . 0 22 hm5C_associated_SNPs_118122 0 0 0 0 2 DRC1 chr2:26672864 3'AG 26672864 Downstream 90bp
chr2 26672953 26672953 1 + C T CESC 26672952 + 26672932 26672972 41 GAGGCTGGATGCCATCTTCTCCGTGAGTCCAACGGGGCTGG GAGGCTGGATGCCATCTTCTCTGTGAGTCCAACGGGGCTGG < 41bp 0.535079110363435 0.75857159254077 0.25761712 0.2229287 prediction 0.44698496435467 Functional Gain - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26672952 chr2:26672953 synonymous SNV . 0 22 hm5C_associated_SNPs_118122 0 0 0 0 2 DRC1 chr2:26672953 5'GT 26672953 Upstream 1bp
chr19 36206338 36206338 1 + C T READ 36206337 + 36206317 36206357 41 GAGCATCCTGCTGATGCCGCCCAGATATGGCATTCCCTTCT GAGCATCCTGCTGATGCCGCCTAGATATGGCATTCCCTTCT < 41bp 0.579479025236224 0.802971293737687 0.023876846 0.04661885 prediction 0.446984537002927 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36206337 chr19:36206338 synonymous SNV . 0 22 hm5C_associated_SNPs_118123 0 0 0 0 1 ZBTB32 chr19:36206409 5'GT 36206409 Upstream 72bp
chr3 11071012 11071012 1 + C A UCEC 11071008 + 11070988 11071028 41 GCTGCTGTCTGCATCATCTCCTACCTGATCGGTCTCTCTAA GCTGCTGTCTGCATCATCTCCTACATGATCGGTCTCTCTAA < 41bp 0.28539894601055 0.7234921038078 0.14160588 0.8554913 prediction 0.446984207615601 Functional Gain - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11071008 chr3:11071012 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_118124 0 0 0 0 1 SLC6A1 chr3:11071038 5'GT 11071038 Upstream 27bp
chr12 65004498 65004498 1 + A G SKCM 65004495 + 65004475 65004515 41 CTCCTTCTTCAGGAGAGCGCCCCAGGGCAAGCCCCGCTCCG CTCCTTCTTCAGGAGAGCGCCCCGGGGCAAGCCCCGCTCCG < 41bp 0.479869155551263 0.723488340821811 0.11560109 0.4572134 prediction 0.446976681643622 Functional Gain - RASSF3 ENSG00000153179 CDS Human protein_coding chr12:65004495 chr12:65004498 nonsynonymous SNV 0.946 0 24 hm5C_associated_SNPs_118126 0 0 1 0 1 RASSF3 chr12:65004523 5'GT 65004523 Upstream 26bp
chr19 35835797 35835797 1 + C A LUSC 35835793 + 35835773 35835813 41 GGGTCCTGCCTCGCCATCCTCATCCTGGCAATCTGTGGGCT GGGTCCTGCCTCGCCATCCTCATCATGGCAATCTGTGGGCT < 41bp 0.29470988695754 0.72347469750428 0.3599762 0.31397074 prediction 0.44694939500856 Functional Gain - CD22 ENSG00000012124 CDS Human protein_coding chr19:35835793 chr19:35835797 nonsynonymous SNV 0.027 3 25 hm5C_associated_SNPs_118127 0 0 0 0 2 CD22 chr19:35835732 3'AG 35835732 Downstream 66bp
chr19 35835797 35835797 1 + C A LUSC 35835793 + 35835773 35835813 41 GGGTCCTGCCTCGCCATCCTCATCCTGGCAATCTGTGGGCT GGGTCCTGCCTCGCCATCCTCATCATGGCAATCTGTGGGCT < 41bp 0.29470988695754 0.72347469750428 0.3599762 0.31397074 prediction 0.44694939500856 Functional Gain - CD22 ENSG00000012124 CDS Human protein_coding chr19:35835793 chr19:35835797 nonsynonymous SNV 0.027 3 25 hm5C_associated_SNPs_118127 0 0 0 0 2 CD22 chr19:35835828 5'GT 35835828 Upstream 32bp
chrX 119509289 119509289 1 + C A HNSC 119509288 + 119509268 119509308 41 CCCCCGGGGCAGTACTTCATCCAAGATGGCAATGAGGATGA CCCCCGGGGCAGTACTTCATCAAAGATGGCAATGAGGATGA < 41bp 0.458168111252206 0.723467965192056 0.2645045 0.6302013 prediction 0.446935930384112 Functional Gain - ATP1B4 ENSG00000101892 CDS Human protein_coding chrX:119509288 chrX:119509289 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_118129 0 0 0 0 1 ATP1B4 chrX:119509227 3'AG 119509227 Downstream 63bp
chr19 41628015 41628015 1 + T A UCS 41628011 + 41627991 41628031 41 AGATCTCCCCGGGACTTCATCCAGTGCTTCCTCACCAAGAT AGATCTCCCCGGGACTTCATCCAGAGCTTCCTCACCAAGAT < 41bp 0.398141303857526 0.723467366414914 0.4667721 0.67534435 prediction 0.446934732829828 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41628011 chr19:41628015 nonsynonymous SNV 0.557 0 25 hm5C_associated_SNPs_118130 0 0 0 0 1 CYP2F1 chr19:41628038 5'GT 41628038 Upstream 24bp
chr17 34539785 34539785 1 + T C rs573773349 34539783 + 34539763 34539803 41 CAGAGCTGCCCCACATGGACCATGGTCAGGCAGAGGAAGAT CAGAGCTGCCCCACATGGACCACGGTCAGGCAGAGGAAGAT < 41bp 0.539775552224287 0.763242367737646 0.047405213 0.051124394 prediction 0.446933631026718 Functional Gain - CCL4L2 ENSG00000205020 CDS Human other chr17:34539783 chr17:34539785 nonsynonymous SNV 0.108 0 23 hm5C_associated_SNPs_118131 0 0 0 0 1 CCL4L2 chr17:34539695 3'AG 34539695 Downstream 91bp
chr3 9979724 9979724 1 + C T LUSC 9979723 + 9979703 9979743 41 CAGGAGGCCCCGGACCTCTTCCAGTGGCTGTGCTCAGATTC CAGGAGGCCCCGGACCTCTTCTAGTGGCTGTGCTCAGATTC < 41bp 0.575334015496035 0.798795080398923 0.5915984 0.33498853 prediction 0.446922129805775 Functional Gain - CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9979723 chr3:9979724 stopgain 0.999 1 22 hm5C_associated_SNPs_118133 0 0 1 0 2 CRELD1 chr3:9979699 3'AG 9979699 Downstream 26bp
chr3 9979724 9979724 1 + C T LUSC 9979723 + 9979703 9979743 41 CAGGAGGCCCCGGACCTCTTCCAGTGGCTGTGCTCAGATTC CAGGAGGCCCCGGACCTCTTCTAGTGGCTGTGCTCAGATTC < 41bp 0.575334015496035 0.798795080398923 0.5915984 0.33498853 prediction 0.446922129805775 Functional Gain - CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9979723 chr3:9979724 stopgain 0.999 1 22 hm5C_associated_SNPs_118133 0 0 1 0 2 CRELD1 chr3:9979790 5'GT 9979790 Upstream 67bp
chr8 48887327 48887327 1 + C T SKCM 48887326 + 48887306 48887346 41 ATGAGGAAGATTGGCAGTAGCCGGGGAATGGTTTCTGCATA ATGAGGAAGATTGGCAGTAGCTGGGGAATGGTTTCTGCATA < 41bp 0.550486689898978 0.773947179805302 0.9453412 0.92398274 prediction 0.446920979812647 Functional Gain - MCM4 ENSG00000104738 CDS Human protein_coding chr8:48887326 chr8:48887327 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_118134 0 0 1 0 1 MCM4 chr8:48887294 3'AG 48887294 Downstream 34bp
chr8 97847326 97847326 1 + C T COAD 97847325 + 97847305 97847345 41 TACTCAAGGACGGTGCAATACCGAACGCAGGGGGCGGTGGA TACTCAAGGACGGTGCAATACTGAACGCAGGGGGCGGTGGA < 41bp 0.583858209700773 0.80731687265198 0.17646551 0.15441236 prediction 0.446917325902416 Functional Gain - CPQ ENSG00000104324 CDS Human protein_coding chr8:97847325 chr8:97847326 stopgain 0.264 1 22 hm5C_associated_SNPs_118135 0 0 1 0 1 CPQ chr8:97847408 5'GT 97847408 Upstream 83bp
chrX 37665738 37665738 1 + C T GBM 37665737 + 37665717 37665757 41 GATGCAGGAAAGGAACAATGCCGGCTTCCTCAGCTACAACA GATGCAGGAAAGGAACAATGCTGGCTTCCTCAGCTACAACA < 41bp 0.4798535612083 0.72345535386335 0.4289944 0.3345816 prediction 0.4469107077267 Functional Gain - CYBB ENSG00000165168 CDS Human protein_coding chrX:37665737 chrX:37665738 synonymous SNV . 0 22 hm5C_associated_SNPs_118137 0 0 0 0 2 CYBB chrX:37665640 3'AG 37665640 Downstream 99bp
chrX 37665738 37665738 1 + C T GBM 37665737 + 37665717 37665757 41 GATGCAGGAAAGGAACAATGCCGGCTTCCTCAGCTACAACA GATGCAGGAAAGGAACAATGCTGGCTTCCTCAGCTACAACA < 41bp 0.4798535612083 0.72345535386335 0.4289944 0.3345816 prediction 0.4469107077267 Functional Gain - CYBB ENSG00000165168 CDS Human protein_coding chrX:37665737 chrX:37665738 synonymous SNV . 0 22 hm5C_associated_SNPs_118137 0 0 0 0 2 CYBB chrX:37665786 5'GT 37665786 Upstream 49bp
chr1 205042318 205042318 1 + C T COAD 205042317 + 205042297 205042337 41 ACAAATTCGGACCACAGGGCCCGGAGGGGATGGGATCCCTG ACAAATTCGGACCACAGGGCCTGGAGGGGATGGGATCCCTG < 41bp 0.461670817680074 0.723446240355515 0.18217158 0.25878704 prediction 0.44689248071103 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205042317 chr1:205042318 synonymous SNV . 0 22 hm5C_associated_SNPs_118141 0 0 0 0 1 CNTN2 chr1:205042364 5'GT 205042364 Upstream 47bp
chr5 38438424 38438424 1 + C T HNSC 38438423 + 38438403 38438443 41 TGTGAAGCATGACTTCACCTCCGGAGTGAATGTGGAGAATG TGTGAAGCATGACTTCACCTCTGGAGTGAATGTGGAGAATG < 41bp 0.573348619472941 0.79679423321478 0.5936087 0.41598985 prediction 0.446891227483679 Functional Gain - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38438423 chr5:38438424 synonymous SNV . 0 22 hm5C_associated_SNPs_118142 0 0 0 0 1 EGFLAM chr5:38438377 3'AG 38438377 Downstream 48bp
chr9 95738990 95738990 1 + A G LIHC 95738987 + 95738967 95739007 41 TGACAAGGATGCCGGCCTGGCCCAGGTAGGCTTCCCCTTCT TGACAAGGATGCCGGCCTGGCCCGGGTAGGCTTCCCCTTCT < 41bp 0.572888343922703 0.796326325359618 0.27688694 0.5654296 prediction 0.44687596287383 Functional Gain - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95738987 chr9:95738990 nonsynonymous SNV 0.156 0 24 hm5C_associated_SNPs_118143 0 0 0 0 1 FGD3 chr9:95738991 5'GT 95738991 Upstream 2bp
chr4 69973946 69973946 1 + A G STAD 69973943 + 69973923 69973963 41 ATCAACCTGATAACATTGCTCACATGAAGGCCAGGGGAGCA ATCAACCTGATAACATTGCTCACGTGAAGGCCAGGGGAGCA < 41bp 0.490691159074492 0.723428826445764 0.27815264 0.3698858 prediction 0.446857652891528 Functional Gain - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69973943 chr4:69973946 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_118147 0 0 1 0 1 UGT2B7 chr4:69974040 5'GT 69974040 Upstream 95bp
chr12 123879637 123879637 1 + C T UCEC 123879636 + 123879616 123879656 41 AGTACGGAGCGCCATGAAGTCCGAGGAACAGAAGATCAAAG AGTACGGAGCGCCATGAAGTCTGAGGAACAGAAGATCAAAG < 41bp 0.564833917880099 0.788260955809333 0.5910435 0.29868788 prediction 0.446854075858468 Functional Gain - KMT5A ENSG00000183955 CDS Human protein_coding chr12:123879636 chr12:123879637 stopgain . 0 22 hm5C_associated_SNPs_118148 0 0 1 0 1 KMT5A chr12:123879594 3'AG 123879594 Downstream 44bp
chr17 27071213 27071213 1 + C A STAD 27071212 + 27071192 27071232 41 GCGGGAAGCCCATGCGCGAGCCTGTGCAGGTTTCCACCTGC GCGGGAAGCCCATGCGCGAGCATGTGCAGGTTTCCACCTGC < 41bp 0.474796209116683 0.723421574752777 0.20924935 0.36848718 prediction 0.446843149505553 Functional Gain - TRAF4 ENSG00000076604 CDS Human protein_coding chr17:27071212 chr17:27071213 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_118149 0 0 1 0 1 TRAF4 chr17:27071273 5'GT 27071273 Upstream 61bp
chr7 150741222 150741222 1 + C T STAD 150741221 + 150741201 150741241 41 CTGGACCGGGCCAGTGCAGGCCGCACGGTGCTGGTAATTGC CTGGACCGGGCCAGTGCAGGCTGCACGGTGCTGGTAATTGC < 41bp 0.590630276243165 0.814044624705793 0.29415452 0.49778864 prediction 0.446828696925256 Functional Gain - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150741221 chr7:150741222 nonsynonymous SNV 0.988 4 22 hm5C_associated_SNPs_118151 0 0 0 0 2 ABCB8 chr7:150741233 5'GT 150741233 Upstream 12bp
chr7 150741222 150741222 1 + C T STAD 150741221 + 150741201 150741241 41 CTGGACCGGGCCAGTGCAGGCCGCACGGTGCTGGTAATTGC CTGGACCGGGCCAGTGCAGGCTGCACGGTGCTGGTAATTGC < 41bp 0.590630276243165 0.814044624705793 0.29415452 0.49778864 prediction 0.446828696925256 Functional Gain - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150741221 chr7:150741222 nonsynonymous SNV 0.988 4 22 hm5C_associated_SNPs_118151 0 0 0 0 2 ABCB8 chr7:150741308 5'GT 150741308 Upstream 87bp
chr1 172356437 172356437 1 + A G rs6688654 172356434 + 172356414 172356454 41 GGGATAATTGGGGACATCAGCACAGCCACCGTGTCCACTCC GGGATAATTGGGGACATCAGCACGGCCACCGTGTCCACTCC < 41bp 0.522280174532908 0.745693712787769 0.63865554 0.92202604 prediction 0.446827076509721 Functional Gain - DNM3 ENSG00000197959 CDS Human protein_coding chr1:172356434 chr1:172356437 synonymous SNV . 0 24 hm5C_associated_SNPs_118153 0 0 0 0 1 DNM3 chr1:172356499 5'GT 172356499 Upstream 63bp
chr3 38017280 38017280 1 + T C UCEC 38017278 + 38017258 38017298 41 TCAGAGAATCATGTGTTTTTCATCGTGGGAACTACGTGAAG TCAGAGAATCATGTGTTTTTCACCGTGGGAACTACGTGAAG < 41bp 0.62174122456624 0.845149547147822 0.42963785 0.36343336 prediction 0.446816645163164 Functional Gain - CTDSPL ENSG00000144677 CDS Human protein_coding chr3:38017278 chr3:38017280 synonymous SNV . 0 23 hm5C_associated_SNPs_118154 0 0 0 0 1 CTDSPL chr3:38017200 3'AG 38017200 Downstream 81bp
chr22 45691480 45691480 1 + C T STAD 45691479 + 45691459 45691499 41 TGGGGAAACGACTCACGACTCCCAAATCACTCAGGAGGCTG TGGGGAAACGACTCACGACTCTCAAATCACTCAGGAGGCTG < 41bp 0.57914568361345 0.802553804454139 0.050528288 0.5020629 prediction 0.446816241681378 Functional Gain - UPK3A ENSG00000100373 CDS Human protein_coding chr22:45691479 chr22:45691480 synonymous SNV . 0 22 hm5C_associated_SNPs_118155 0 0 0 0 1 UPK3A chr22:45691441 3'AG 45691441 Downstream 40bp
chr3 179322659 179322659 1 + C G LUSC 179322655 + 179322635 179322675 41 CGGTTACTGCGGTGGCAGCTCTGTCTGGCCGGCCCCTTGGC CGGTTACTGCGGTGGCAGCTCTGTGTGGCCGGCCCCTTGGC < 41bp 0.61103162712321 0.834438963974976 0.48347506 0.60828245 prediction 0.446814673703531 Functional Gain - NDUFB5 ENSG00000136521 CDS Human protein_coding chr3:179322655 chr3:179322659 nonsynonymous SNV 0.015 0 25 hm5C_associated_SNPs_118156 0 0 1 0 1 NDUFB5 chr3:179322727 5'GT 179322727 Upstream 69bp
chr19 48198722 48198722 1 + C T rs189817920 48198721 + 48198701 48198741 41 CTCCGGGCCAGGGAAGCCCTCCGGGCTGCAGGTAAGGGGCC CTCCGGGCCAGGGAAGCCCTCTGGGCTGCAGGTAAGGGGCC < 41bp 0.533551927266657 0.756958714110798 0.8015932 0.47902876 prediction 0.446813573688282 Functional Gain - BICRA ENSG00000063169 CDS Human protein_coding chr19:48198721 chr19:48198722 synonymous SNV . 0 22 hm5C_associated_SNPs_118157 0 0 0 0 1 BICRA chr19:48198731 5'GT 48198731 Upstream 10bp
chr1 155288063 155288063 1 + T C UCEC 155288061 + 155288041 155288081 41 GAGCAGCCCTATTACCTGAACCTGATCGAGCTCTTCCTGCA GAGCAGCCCTATTACCTGAACCCGATCGAGCTCTTCCTGCA < 41bp 0.429082010546466 0.723389659943556 0.25726986 0.16269898 prediction 0.446779319887111 Functional Gain - FDPS ENSG00000160752 CDS Human protein_coding chr1:155288061 chr1:155288063 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_118164 0 0 1 0 1 FDPS chr1:155288082 5'GT 155288082 Upstream 20bp
chr4 1305883 1305883 1 + C A GBM 1305882 + 1305862 1305902 41 GAAGACGTTGAGCGGCTGCCCCGCCGTGGACTCCGTGGTCA GAAGACGTTGAGCGGCTGCCCAGCCGTGGACTCCGTGGTCA < 41bp 0.480655813614138 0.723387823494465 0.060673654 0.110970974 prediction 0.44677564698893 Functional Gain - MAEA ENSG00000090316 CDS Human protein_coding chr4:1305882 chr4:1305883 synonymous SNV . 0 22 hm5C_associated_SNPs_118165 0 0 1 0 1 MAEA chr4:1305949 5'GT 1305949 Upstream 67bp
chr5 180326326 180326326 1 + A G rs138728915 180326323 + 180326303 180326343 41 ACACATCCATGGCTCTCATGCTCAGTTTGGTTCTGAGTCTC ACACATCCATGGCTCTCATGCTCGGTTTGGTTCTGAGTCTC < 41bp 0.476855950835568 0.723384402127148 0.15103713 0.1523926 prediction 0.446768804254297 Functional Gain - BTNL8 ENSG00000113303 CDS Human protein_coding chr5:180326323 chr5:180326326 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_118168 0 0 0 0 1 BTNL8 chr5:180326359 5'GT 180326359 Upstream 34bp
chr16 1836869 1836869 1 + C T HNSC 1836868 + 1836848 1836888 41 TGGGCACCCGTCTTCCTGGACCGGGAGCAGAGCATCTCGCT TGGGCACCCGTCTTCCTGGACTGGGAGCAGAGCATCTCGCT < 41bp 0.544643306129206 0.768020691003249 0.8287862 0.28027672 prediction 0.446754769748085 Functional Gain - NUBP2 ENSG00000095906 CDS Human protein_coding chr16:1836868 chr16:1836869 nonsynonymous SNV 0.963 2 22 hm5C_associated_SNPs_118169 0 0 1 0 1 NUBP2 chr16:1836956 5'GT 1836956 Upstream 88bp
chr16 67037017 67037017 1 + C A UCEC 67037016 + 67036996 67037036 41 TCTCTTCCATCGGGCCATTTCCCAGAGTGGCACCGCGTTAT TCTCTTCCATCGGGCCATTTCACAGAGTGGCACCGCGTTAT < 41bp 0.452680865921061 0.723372725115386 0.3665075 0.65631616 prediction 0.446745450230771 Functional Gain - CES4A ENSG00000172824 CDS Human protein_coding chr16:67037016 chr16:67037017 synonymous SNV . 0 22 hm5C_associated_SNPs_118170 0 0 0 0 2 CES4A chr16:67036973 3'AG 67036973 Downstream 45bp
chr16 67037017 67037017 1 + C A UCEC 67037016 + 67036996 67037036 41 TCTCTTCCATCGGGCCATTTCCCAGAGTGGCACCGCGTTAT TCTCTTCCATCGGGCCATTTCACAGAGTGGCACCGCGTTAT < 41bp 0.452680865921061 0.723372725115386 0.3665075 0.65631616 prediction 0.446745450230771 Functional Gain - CES4A ENSG00000172824 CDS Human protein_coding chr16:67037016 chr16:67037017 synonymous SNV . 0 22 hm5C_associated_SNPs_118170 0 0 0 0 2 CES4A chr16:67037077 5'GT 67037077 Upstream 61bp
chr9 98229708 98229708 1 + C A LUSC 98229704 + 98229684 98229724 41 CAGAAAAAGGAAGATCACCACTACCTGGAACAGAAGAGGCA CAGAAAAAGGAAGATCACCACTACATGGAACAGAAGAGGCA < 41bp 0.292006963069475 0.723372059141895 0.10335514 0.8857417 prediction 0.44674411828379 Functional Gain - LOC100507346;PTCH1 ENSG00000185920 splicing Human protein_coding chr9:98229704 chr9:98229708 . 0.689 0 25 hm5C_associated_SNPs_118171 0 0 0 0 2 PTCH1 chr9:98229614 3'AG 98229614 Downstream 95bp
chr9 98229708 98229708 1 + C A LUSC 98229704 + 98229684 98229724 41 CAGAAAAAGGAAGATCACCACTACCTGGAACAGAAGAGGCA CAGAAAAAGGAAGATCACCACTACATGGAACAGAAGAGGCA < 41bp 0.292006963069475 0.723372059141895 0.10335514 0.8857417 prediction 0.44674411828379 Functional Gain - LOC100507346;PTCH1 ENSG00000185920 splicing Human protein_coding chr9:98229704 chr9:98229708 . 0.689 0 25 hm5C_associated_SNPs_118171 0 0 0 0 2 LOC100507346 chr9:98229728 5'GT 98229728 Upstream 21bp
chr6 43111338 43111338 1 + C T SKCM 43111337 + 43111317 43111357 41 AGCAGCCCGAGGGCGAGGAGCCAGAGATGGAATGCCTCAAC AGCAGCCCGAGGGCGAGGAGCTAGAGATGGAATGCCTCAAC < 41bp 0.573086903635746 0.796458153582909 0.8905302 0.7576773 prediction 0.446742499894326 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43111337 chr6:43111338 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_118172 0 0 1 0 1 PTK7 chr6:43111358 5'GT 43111358 Upstream 21bp
chr19 1529789 1529789 1 + A G SARC 1529786 + 1529766 1529806 41 CCAGAGGTGGAGGCGGCCCTCAGACACCTGCAGCTGTGCCT CCAGAGGTGGAGGCGGCCCTCAGGCACCTGCAGCTGTGCCT < 41bp 0.574828813792459 0.798194539906723 0.70944977 0.8636631 prediction 0.446731452228528 Functional Gain - PLK5 ENSG00000185988 CDS Human protein_coding chr19:1529786 chr19:1529789 synonymous SNV . 0 24 hm5C_associated_SNPs_118177 0 0 0 0 2 PLK5 chr19:1529746 3'AG 1529746 Downstream 44bp
chr19 1529789 1529789 1 + A G SARC 1529786 + 1529766 1529806 41 CCAGAGGTGGAGGCGGCCCTCAGACACCTGCAGCTGTGCCT CCAGAGGTGGAGGCGGCCCTCAGGCACCTGCAGCTGTGCCT < 41bp 0.574828813792459 0.798194539906723 0.70944977 0.8636631 prediction 0.446731452228528 Functional Gain - PLK5 ENSG00000185988 CDS Human protein_coding chr19:1529786 chr19:1529789 synonymous SNV . 0 24 hm5C_associated_SNPs_118177 0 0 0 0 2 PLK5 chr19:1529823 5'GT 1529823 Upstream 35bp
chr18 59217417 59217417 1 + C T UCEC 59217416 + 59217396 59217436 41 ATGCTCCCAGTCAGTTTGAGCCGGGGCGCCCTCATTGCCAT ATGCTCCCAGTCAGTTTGAGCTGGGGCGCCCTCATTGCCAT < 41bp 0.555127648511824 0.778490728371555 0.74430937 0.28941548 prediction 0.446726159719463 Functional Gain - CDH20 ENSG00000101542 CDS Human protein_coding chr18:59217416 chr18:59217417 nonsynonymous SNV 0.991 3 22 hm5C_associated_SNPs_118178 0 0 0 0 1 CDH20 chr18:59217462 5'GT 59217462 Upstream 46bp
chr11 62554088 62554088 1 + T C STAD 62554086 + 62554066 62554106 41 CCGGCGCCTGGACGACCTGCCATGGGACAGCCTTCTCTTTC CCGGCGCCTGGACGACCTGCCACGGGACAGCCTTCTCTTTC < 41bp 0.572082610013451 0.795443408761998 0.90919197 0.9002063 prediction 0.446721597497095 Functional Gain - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62554086 chr11:62554088 nonsynonymous SNV 0.899 1 23 hm5C_associated_SNPs_118180 0 0 1 0 1 TAF6L chr11:62553989 3'AG 62553989 Downstream 100bp
chr20 32436391 32436391 1 + C T UCEC 32436390 + 32436370 32436410 41 GGAGAATGCCAACACCAACACCGAGGTGCTCAAGAACATGG GGAGAATGCCAACACCAACACTGAGGTGCTCAAGAACATGG < 41bp 0.565770057102054 0.789130126388565 0.2604915 0.09785923 prediction 0.446720138573023 Functional Gain - CHMP4B ENSG00000101421 CDS Human protein_coding chr20:32436390 chr20:32436391 synonymous SNV . 0 22 hm5C_associated_SNPs_118181 0 0 1 0 1 CHMP4B chr20:32436450 5'GT 32436450 Upstream 60bp
chr7 73602004 73602004 1 + C A SKCM 73602000 + 73601980 73602020 41 GAAGGAGTTGCCCACAGAGCCCCCCTACACAGCATACGTAG GAAGGAGTTGCCCACAGAGCCCCCATACACAGCATACGTAG < 41bp 0.296388883500336 0.723352944310479 0.017479569 0.038995564 prediction 0.446705888620959 Functional Gain - EIF4H ENSG00000106682 CDS Human protein_coding chr7:73602000 chr7:73602004 synonymous SNV . 0 25 hm5C_associated_SNPs_118190 0 0 1 0 1 EIF4H chr7:73601941 3'AG 73601941 Downstream 64bp
chr6 160557643 160557643 1 + C G rs2282143 160557642 + 160557622 160557662 41 TTGCAGACCTGTTCCGCACGCCGCGCCTGAGGAAGCGCACC TTGCAGACCTGTTCCGCACGCGGCGCCTGAGGAAGCGCACC < 41bp 0.391749081241179 0.72335008974063 0.02691093 0.20233855 prediction 0.446700179481261 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160557642 chr6:160557643 nonsynonymous SNV 0.004 4 22 hm5C_associated_SNPs_118193 0 0 0 0 2 SLC22A1 chr6:160557576 3'AG 160557576 Downstream 68bp
chr6 160557643 160557643 1 + C G rs2282143 160557642 + 160557622 160557662 41 TTGCAGACCTGTTCCGCACGCCGCGCCTGAGGAAGCGCACC TTGCAGACCTGTTCCGCACGCGGCGCCTGAGGAAGCGCACC < 41bp 0.391749081241179 0.72335008974063 0.02691093 0.20233855 prediction 0.446700179481261 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160557642 chr6:160557643 nonsynonymous SNV 0.004 4 22 hm5C_associated_SNPs_118193 0 0 0 0 2 SLC22A1 chr6:160557682 5'GT 160557682 Upstream 40bp
chr2 1497738 1497738 1 + C T SKCM 1497737 + 1497717 1497757 41 GGCTTAGCTGAAAACTTCCTCCCCAGGGCTCGGACAGGGCC GGCTTAGCTGAAAACTTCCTCTCCAGGGCTCGGACAGGGCC < 41bp 0.442286967271645 0.723334509061954 0.2626254 0.9284868 prediction 0.446669018123907 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1497737 chr2:1497738 nonsynonymous SNV 0.012 3 22 hm5C_associated_SNPs_118200 0 0 0 1 1 TPO chr2:1497811 5'GT 1497811 Upstream 74bp
chr8 121518972 121518972 1 + A G COAD 121518969 + 121518949 121518989 41 TGGTTCATTACCTCATTCATCTGAACAGTTGCTGGGCCACA TGGTTCATTACCTCATTCATCTGGACAGTTGCTGGGCCACA < 41bp 0.523481643831719 0.746813528794344 0.27560732 0.47159308 prediction 0.44666376992525 Functional Gain - MTBP ENSG00000172167 CDS Human protein_coding chr8:121518969 chr8:121518972 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_118201 0 0 0 0 1 MTBP chr8:121518946 3'AG 121518946 Downstream 27bp
chr19 1269331 1269331 1 + C A rs147512234 1269330 + 1269310 1269350 41 CGGGCTCGGGGACGCCCCCCCCTCACTCGCGCGTTAGGAGG CGGGCTCGGGGACGCCCCCCCATCACTCGCGCGTTAGGAGG < 41bp 0.498207317289471 0.723327475214041 0.1213741 0.25118932 prediction 0.446654950428082 Functional Gain - CIRBP-AS1 ENSG00000267493 ncRNA_intronic Human antisense chr19:1269330 chr19:1269331 . . 0 22 hm5C_associated_SNPs_118204 0 0 1 0 1 CIRBP-AS1 chr19:1269409 5'GT 1269409 Upstream 79bp
chr1 172425567 172425567 1 + C A OV 172425566 + 172425546 172425586 41 TCCCCTCAGGCCAGGAGGAACCAGTGTGACTCCATGCTGCT TCCCCTCAGGCCAGGAGGAACAAGTGTGACTCCATGCTGCT < 41bp 0.458486766520585 0.723317413437019 0.82607436 0.9115709 prediction 0.446634826874038 Functional Gain - C1orf105 ENSG00000180999 CDS Human protein_coding chr1:172425566 chr1:172425567 nonsynonymous SNV 0.010 1 22 hm5C_associated_SNPs_118209 0 0 0 0 2 C1orf105 chr1:172425555 3'AG 172425555 Downstream 13bp
chr1 172425567 172425567 1 + C A OV 172425566 + 172425546 172425586 41 TCCCCTCAGGCCAGGAGGAACCAGTGTGACTCCATGCTGCT TCCCCTCAGGCCAGGAGGAACAAGTGTGACTCCATGCTGCT < 41bp 0.458486766520585 0.723317413437019 0.82607436 0.9115709 prediction 0.446634826874038 Functional Gain - C1orf105 ENSG00000180999 CDS Human protein_coding chr1:172425566 chr1:172425567 nonsynonymous SNV 0.010 1 22 hm5C_associated_SNPs_118209 0 0 0 0 2 C1orf105 chr1:172425629 5'GT 172425629 Upstream 63bp
chr19 15784370 15784370 1 + C T rs181648518 15784369 + 15784349 15784389 41 CTGAGCCTGCCCTGGCTGGGCCTCAGACCGGTGGCAACGTC CTGAGCCTGCCCTGGCTGGGCTTCAGACCGGTGGCAACGTC < 41bp 0.477028094852261 0.723310362554711 0.17702776 0.21482098 prediction 0.446620725109423 Functional Gain - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15784369 chr19:15784370 nonsynonymous SNV 0.024 2 22 hm5C_associated_SNPs_118211 0 0 1 0 1 CYP4F12 chr19:15784339 3'AG 15784339 Downstream 32bp
chr12 53683279 53683279 1 + C T UCEC 53683278 + 53683258 53683298 41 CCTGGAGATGTCCCCCTGGCCCGCATCCAGCGCCTCTTTTC CCTGGAGATGTCCCCCTGGCCTGCATCCAGCGCCTCTTTTC < 41bp 0.464497526166022 0.72331007514759 0.20900008 0.15851441 prediction 0.44662015029518 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53683278 chr12:53683279 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_118212 0 0 0 0 2 ESPL1 chr12:53683188 3'AG 53683188 Downstream 92bp
chr12 53683279 53683279 1 + C T UCEC 53683278 + 53683258 53683298 41 CCTGGAGATGTCCCCCTGGCCCGCATCCAGCGCCTCTTTTC CCTGGAGATGTCCCCCTGGCCTGCATCCAGCGCCTCTTTTC < 41bp 0.464497526166022 0.72331007514759 0.20900008 0.15851441 prediction 0.44662015029518 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53683278 chr12:53683279 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_118212 0 0 0 0 2 ESPL1 chr12:53683378 5'GT 53683378 Upstream 100bp
chr1 17550888 17550888 1 + C T LUSC 17550887 + 17550867 17550907 41 TCCCTTGAGGTTGACACAGGCCGCACAGGCAAGGTGAAGAG TCCCTTGAGGTTGACACAGGCTGCACAGGCAAGGTGAAGAG < 41bp 0.468735720423509 0.723302979467404 0.012781918 0.022330523 prediction 0.446605958934807 Functional Gain - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17550887 chr1:17550888 nonsynonymous SNV 0.724 1 22 hm5C_associated_SNPs_118215 0 0 0 0 2 PADI1 chr1:17550862 3'AG 17550862 Downstream 27bp
chr1 17550888 17550888 1 + C T LUSC 17550887 + 17550867 17550907 41 TCCCTTGAGGTTGACACAGGCCGCACAGGCAAGGTGAAGAG TCCCTTGAGGTTGACACAGGCTGCACAGGCAAGGTGAAGAG < 41bp 0.468735720423509 0.723302979467404 0.012781918 0.022330523 prediction 0.446605958934807 Functional Gain - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17550887 chr1:17550888 nonsynonymous SNV 0.724 1 22 hm5C_associated_SNPs_118215 0 0 0 0 2 PADI1 chr1:17550923 5'GT 17550923 Upstream 36bp
chr18 43316486 43316486 1 + C A UCEC 43316482 + 43316462 43316502 41 GGGACCTCCCCGTCTTCACCCTCCCTTTCAACATGGCGTTG GGGACCTCCCCGTCTTCACCCTCCATTTCAACATGGCGTTG < 41bp 0.289908140377525 0.723298648439769 0.048183918 0.94032705 prediction 0.446597296879538 Functional Gain - SLC14A1 ENSG00000141469 CDS Human protein_coding chr18:43316482 chr18:43316486 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_118218 0 0 0 0 1 SLC14A1 chr18:43316421 3'AG 43316421 Downstream 66bp
chr19 15769090 15769090 1 + C A SARC 15769086 + 15769066 15769106 41 TTCCTTAGGGACGACCTGGCCCAGCTGCCCTTCCTGACCAT TTCCTTAGGGACGACCTGGCCCAGATGCCCTTCCTGACCAT < 41bp 0.309416596758211 0.723286313538615 0.015957445 0.11693427 prediction 0.44657262707723 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15769086 chr19:15769090 nonsynonymous SNV 0.015 1 25 hm5C_associated_SNPs_118222 0 0 0 0 1 CYP4F3 chr19:15769074 3'AG 15769074 Downstream 17bp
chr10 118313344 118313344 1 + A G UCEC 118313341 + 118313321 118313361 41 GAACCAATGGGACCATTGGACGCATCACAGGTTGGTGAAAA GAACCAATGGGACCATTGGACGCGTCACAGGTTGGTGAAAA < 41bp 0.530794998040276 0.754070586894059 0.06273684 0.10524759 prediction 0.446551177707565 Functional Gain - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313341 chr10:118313344 nonsynonymous SNV 0.803 3 24 hm5C_associated_SNPs_118225 0 0 0 0 1 PNLIP chr10:118313350 5'GT 118313350 Upstream 7bp
chr19 4488702 4488702 1 + C T UCEC 4488701 + 4488681 4488721 41 CTCCTCCGACAGCGAGGCCCCCGAGGCCAACCCCGCCGACG CTCCTCCGACAGCGAGGCCCCTGAGGCCAACCCCGCCGACG < 41bp 0.495155565992955 0.723273043258181 0.7734419 0.47670066 prediction 0.446546086516363 Functional Gain - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4488701 chr19:4488702 synonymous SNV . 0 22 hm5C_associated_SNPs_118227 0 0 1 0 1 HDGFL2 chr19:4488673 3'AG 4488673 Downstream 30bp
chr12 133196156 133196156 1 + C A LUAD 133196152 + 133196132 133196172 41 ACGTGGAGGAGTACGTGAAGCCCCCCGAGGTGCGGGCCGCC ACGTGGAGGAGTACGTGAAGCCCCACGAGGTGCGGGCCGCC < 41bp 0.320797313313917 0.7232634138889 0.10283458 0.17853159 prediction 0.4465268277778 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133196152 chr12:133196156 nonsynonymous SNV 0.826 4 25 hm5C_associated_SNPs_118232 0 0 0 0 1 P2RX2 chr12:133196160 5'GT 133196160 Upstream 5bp
chr8 42586907 42586907 1 + T A COAD 42586903 + 42586883 42586923 41 CCTCCCGCCAGCTACAAAAGCTCCTGCACCATGGACGTCAC CCTCCCGCCAGCTACAAAAGCTCCAGCACCATGGACGTCAC < 41bp 0.686128202595763 0.909387643544304 0.22059447 0.41315103 prediction 0.446518881897082 Functional Gain - CHRNB3 ENSG00000147432 CDS Human protein_coding chr8:42586903 chr8:42586907 nonsynonymous SNV 0.995 5 25 hm5C_associated_SNPs_118235 0 0 0 0 1 CHRNB3 chr8:42586810 3'AG 42586810 Downstream 98bp
chr1 227170666 227170666 1 + C T LUAD 227170665 + 227170645 227170685 41 CTTCGAGGAGCGGCCCTTCGCCGCCGCATCCATTGGGCAGG CTTCGAGGAGCGGCCCTTCGCTGCCGCATCCATTGGGCAGG < 41bp 0.565714693678061 0.78897397464589 0.1242578 0.05713737 prediction 0.446518561935659 Functional Gain - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227170665 chr1:227170666 synonymous SNV . 0 22 hm5C_associated_SNPs_118236 0 0 1 0 1 COQ8A chr1:227170735 5'GT 227170735 Upstream 70bp
chr17 37898947 37898947 1 + C T LUSC 37898946 + 37898926 37898966 41 CCAGTGCAAGGGGGCTGCTCCCCCGCGATGCCAGCCGCCCC CCAGTGCAAGGGGGCTGCTCCTCCGCGATGCCAGCCGCCCC < 41bp 0.584262603669471 0.807521593627166 0.10549876 0.21797371 prediction 0.446517979915391 Functional Gain - GRB7 ENSG00000141738 CDS Human protein_coding chr17:37898946 chr17:37898947 nonsynonymous SNV 0.495 3 22 hm5C_associated_SNPs_118237 0 0 0 0 1 GRB7 chr17:37898969 5'GT 37898969 Upstream 23bp
chr12 20523121 20523121 1 + C T STAD 20523120 + 20523100 20523140 41 CGTCGTGTCCGCCGAGATGTCCGGCTGCAGCAGCAAGTCCC CGTCGTGTCCGCCGAGATGTCTGGCTGCAGCAGCAAGTCCC < 41bp 0.497076579427412 0.723255567089547 0.87276596 0.36149228 prediction 0.446511134179094 Functional Gain - PDE3A ENSG00000172572 CDS Human protein_coding chr12:20523120 chr12:20523121 synonymous SNV . 0 22 hm5C_associated_SNPs_118238 0 0 0 0 1 PDE3A chr12:20523178 5'GT 20523178 Upstream 58bp
chr8 86171702 86171702 1 + T C UCEC 86171700 + 86171680 86171720 41 ACAGGTTACGGCAGGTTCACCTTCACTGGGGGTCCGCTGAT ACAGGTTACGGCAGGTTCACCTCCACTGGGGGTCCGCTGAT < 41bp 0.653445051768514 0.876696485608312 0.5521788 0.9576013 prediction 0.446502867679595 Functional Gain - CA13 ENSG00000185015 CDS Human protein_coding chr8:86171700 chr8:86171702 synonymous SNV . 0 23 hm5C_associated_SNPs_118240 0 0 0 0 2 CA13 chr8:86171650 3'AG 86171650 Downstream 53bp
chr8 86171702 86171702 1 + T C UCEC 86171700 + 86171680 86171720 41 ACAGGTTACGGCAGGTTCACCTTCACTGGGGGTCCGCTGAT ACAGGTTACGGCAGGTTCACCTCCACTGGGGGTCCGCTGAT < 41bp 0.653445051768514 0.876696485608312 0.5521788 0.9576013 prediction 0.446502867679595 Functional Gain - CA13 ENSG00000185015 CDS Human protein_coding chr8:86171700 chr8:86171702 synonymous SNV . 0 23 hm5C_associated_SNPs_118240 0 0 0 0 2 CA13 chr8:86171768 5'GT 86171768 Upstream 67bp
chr19 39212291 39212291 1 + C T BLCA 39212290 + 39212270 39212310 41 GACCTGGCTGCGCACCAGGACCGCGTGGAGCAGATCGCCGC GACCTGGCTGCGCACCAGGACTGCGTGGAGCAGATCGCCGC < 41bp 0.462264852415453 0.723251238366853 0.21134025 0.26186708 prediction 0.446502476733706 Functional Gain - ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39212290 chr19:39212291 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_118241 0 0 1 0 1 ACTN4 chr19:39212328 5'GT 39212328 Upstream 38bp
chr1 27121634 27121634 1 + C T SKCM 27121633 + 27121613 27121653 41 ACAATAAGACCCTAGAGAAGCCCGATCTTGGATTCCTCAGT ACAATAAGACCCTAGAGAAGCTCGATCTTGGATTCCTCAGT < 41bp 0.592901739565411 0.816146672029021 0.17267099 0.14179644 prediction 0.446489864927218 Functional Gain - PIGV ENSG00000060642 CDS Human protein_coding chr1:27121633 chr1:27121634 nonsynonymous SNV 0.009 3 22 hm5C_associated_SNPs_118242 0 0 0 0 1 PIGV chr1:27121725 5'GT 27121725 Upstream 92bp
chr10 5960399 5960399 1 + C T rs34181117 5960398 + 5960378 5960418 41 CTTCCGGGGTGCGGTCAACGCCCTGTTCACAGTGCCCCACA CTTCCGGGGTGCGGTCAACGCTCTGTTCACAGTGCCCCACA < 41bp 0.602523077078711 0.825751606408674 0.20677751 0.18602833 prediction 0.446457058659927 Functional Gain - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5960398 chr10:5960399 synonymous SNV . 0 22 hm5C_associated_SNPs_118247 0 0 0 0 2 FBXO18 chr10:5960305 3'AG 5960305 Downstream 95bp
chr10 5960399 5960399 1 + C T rs34181117 5960398 + 5960378 5960418 41 CTTCCGGGGTGCGGTCAACGCCCTGTTCACAGTGCCCCACA CTTCCGGGGTGCGGTCAACGCTCTGTTCACAGTGCCCCACA < 41bp 0.602523077078711 0.825751606408674 0.20677751 0.18602833 prediction 0.446457058659927 Functional Gain - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5960398 chr10:5960399 synonymous SNV . 0 22 hm5C_associated_SNPs_118247 0 0 0 0 2 FBXO18 chr10:5960441 5'GT 5960441 Upstream 43bp
chr19 1080511 1080511 1 + A G LUAD 1080508 + 1080488 1080528 41 GTCATGGCCGCTCTCGATCTCAGACTCGGACAGTGGGCTGG GTCATGGCCGCTCTCGATCTCAGGCTCGGACAGTGGGCTGG < 41bp 0.465998713801332 0.72322327283366 0.60667634 0.90150535 prediction 0.44644654566732 Functional Gain - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1080508 chr19:1080511 nonsynonymous SNV 0.009 1 24 hm5C_associated_SNPs_118249 0 0 0 0 2 ARHGAP45 chr19:1080463 3'AG 1080463 Downstream 49bp
chr19 1080511 1080511 1 + A G LUAD 1080508 + 1080488 1080528 41 GTCATGGCCGCTCTCGATCTCAGACTCGGACAGTGGGCTGG GTCATGGCCGCTCTCGATCTCAGGCTCGGACAGTGGGCTGG < 41bp 0.465998713801332 0.72322327283366 0.60667634 0.90150535 prediction 0.44644654566732 Functional Gain - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1080508 chr19:1080511 nonsynonymous SNV 0.009 1 24 hm5C_associated_SNPs_118249 0 0 0 0 2 ARHGAP45 chr19:1080546 5'GT 1080546 Upstream 36bp
chr3 183824008 183824008 1 + C G LUAD 183824004 + 183823984 183824024 41 CTGCTGCACGTGGCCACCACCCAGCCCCCACCCCTGCCTCG CTGCTGCACGTGGCCACCACCCAGGCCCCACCCCTGCCTCG < 41bp 0.415917580428084 0.723217106226813 0.0539414 0.13484243 prediction 0.446434212453626 Functional Gain - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183824004 chr3:183824008 nonsynonymous SNV 0.380 3 25 hm5C_associated_SNPs_118250 0 0 0 0 1 HTR3E chr3:183823916 3'AG 183823916 Downstream 93bp
chr1 36553673 36553673 1 + A G rs399393 36553670 + 36553650 36553690 41 CTGGACACCAAGTGCATGGACACACGGCGCAAGCTGACCGT CTGGACACCAAGTGCATGGACACGCGGCGCAAGCTGACCGT < 41bp 0.563806648560206 0.787014671982376 0.18059325 0.2861286 prediction 0.446416046844339 Functional Gain - TEKT2 ENSG00000092850 CDS Human protein_coding chr1:36553670 chr1:36553673 synonymous SNV . 0 24 hm5C_associated_SNPs_118253 0 0 0 0 1 TEKT2 chr1:36553574 3'AG 36553574 Downstream 100bp
chr1 40980259 40980259 1 + T G KIRC 40980257 + 40980237 40980277 41 GGAGACAGTGTCAGCAGAAGCCTCAGGGTTCTCAGACTTGA GGAGACAGTGTCAGCAGAAGCCGCAGGGTTCTCAGACTTGA < 41bp 0.401866864123787 0.723204155659729 0.06905082 0.16646162 prediction 0.446408311319458 Functional Gain - EXO5 ENSG00000164002 CDS Human antisense chr1:40980257 chr1:40980259 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_118255 0 0 0 0 1 EXO5 chr1:40980187 3'AG 40980187 Downstream 73bp
chr5 7889304 7889304 1 + C T rs2287780 7889303 + 7889283 7889323 41 CAAGGGGCAGCCGATTATAGCCGCTTTGTACGAGATGCCTG CAAGGGGCAGCCGATTATAGCTGCTTTGTACGAGATGCCTG < 41bp 0.478707749781752 0.723202581104488 0.22099045 0.2238445 prediction 0.446405162208977 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7889303 chr5:7889304 nonsynonymous SNV 0.029 3 22 hm5C_associated_SNPs_118258 2 0 1 0 2 MTRR chr5:7889208 3'AG 7889208 Downstream 97bp
chr5 7889304 7889304 1 + C T rs2287780 7889303 + 7889283 7889323 41 CAAGGGGCAGCCGATTATAGCCGCTTTGTACGAGATGCCTG CAAGGGGCAGCCGATTATAGCTGCTTTGTACGAGATGCCTG < 41bp 0.478707749781752 0.723202581104488 0.22099045 0.2238445 prediction 0.446405162208977 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7889303 chr5:7889304 nonsynonymous SNV 0.029 3 22 hm5C_associated_SNPs_118258 2 0 1 0 2 MTRR chr5:7889388 5'GT 7889388 Upstream 85bp
chr6 130407387 130407387 1 + C A KIRC 130407386 + 130407366 130407406 41 GTGGCAGACACAGATGATCACCGGGTAAAAGTAAGTGTTCT GTGGCAGACACAGATGATCACAGGGTAAAAGTAAGTGTTCT < 41bp 0.456800775578713 0.723201464325023 0.88399893 0.89004326 prediction 0.446402928650046 Functional Gain - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130407386 chr6:130407387 synonymous SNV . 0 22 hm5C_associated_SNPs_118259 0 0 0 0 1 L3MBTL3 chr6:130407395 5'GT 130407395 Upstream 9bp
chr12 28458687 28458687 1 + A G BLCA 28458684 + 28458664 28458704 41 TGATGCCATTATTTCATCACCAGAGAATACACATGCAGCAA TGATGCCATTATTTCATCACCAGGGAATACACATGCAGCAA < 41bp 0.529686323714931 0.752881602422432 0.7624825 0.8772161 prediction 0.446390557415001 Functional Gain - CCDC91 ENSG00000123106 CDS Human protein_coding chr12:28458684 chr12:28458687 nonsynonymous SNV 0.078 0 24 hm5C_associated_SNPs_118260 0 0 1 0 1 CCDC91 chr12:28458739 5'GT 28458739 Upstream 53bp
chr16 56667308 56667308 1 + T A STAD 56667304 + 56667284 56667324 41 TGCAAAGAGTGCAAATGCACCTCCTGCAAGAAGAGTGAGTG TGCAAAGAGTGCAAATGCACCTCCAGCAAGAAGAGTGAGTG < 41bp 0.374438815498993 0.723195170057407 0.12058121 0.48773792 prediction 0.446390340114813 Functional Gain - MT1M ENSG00000205364 CDS Human protein_coding chr16:56667304 chr16:56667308 nonsynonymous SNV 0.574 3 25 hm5C_associated_SNPs_118261 0 0 0 0 1 MT1M chr16:56667252 3'AG 56667252 Downstream 57bp
chr15 25496337 25496337 1 + C G rs187228854 25496336 + 25496316 25496356 41 CTTTCAGTGAGCTCTTCCACCCGGGCGGGCCCCCGGCATTG CTTTCAGTGAGCTCTTCCACCGGGGCGGGCCCCCGGCATTG < 41bp 0.643288926762815 0.866483487169768 0.84136844 0.92569834 prediction 0.446389120813906 Functional Gain - SNHG14 ENSG00000202261 downstream Human snoRNA chr15:25496336 chr15:25496337 . . 0 22 hm5C_associated_SNPs_118262 0 0 0 0 2 SNHG14 chr15:25496323 3'AG 25496323 Downstream 15bp
chr15 25496337 25496337 1 + C G rs187228854 25496336 + 25496316 25496356 41 CTTTCAGTGAGCTCTTCCACCCGGGCGGGCCCCCGGCATTG CTTTCAGTGAGCTCTTCCACCGGGGCGGGCCCCCGGCATTG < 41bp 0.643288926762815 0.866483487169768 0.84136844 0.92569834 prediction 0.446389120813906 Functional Gain - SNHG14 ENSG00000202261 downstream Human snoRNA chr15:25496336 chr15:25496337 . . 0 22 hm5C_associated_SNPs_118262 0 0 0 0 2 SNHG14 chr15:25496366 5'GT 25496366 Upstream 30bp
chr22 21380181 21380181 1 + C A rs113447136 21380180 + 21380160 21380200 41 CCGCTTCGACATCCTCGTCACCGGGCAGGTAGGCACAGGTA CCGCTTCGACATCCTCGTCACAGGGCAGGTAGGCACAGGTA < 41bp 0.603246681063173 0.82644089318928 0.2945522 0.5354248 prediction 0.446388424252215 Functional Gain - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21380180 chr22:21380181 synonymous SNV . 0 22 hm5C_associated_SNPs_118263 0 0 0 0 2 P2RX6 chr22:21380094 3'AG 21380094 Downstream 88bp
chr22 21380181 21380181 1 + C A rs113447136 21380180 + 21380160 21380200 41 CCGCTTCGACATCCTCGTCACCGGGCAGGTAGGCACAGGTA CCGCTTCGACATCCTCGTCACAGGGCAGGTAGGCACAGGTA < 41bp 0.603246681063173 0.82644089318928 0.2945522 0.5354248 prediction 0.446388424252215 Functional Gain - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21380180 chr22:21380181 synonymous SNV . 0 22 hm5C_associated_SNPs_118263 0 0 0 0 2 P2RX6 chr22:21380187 5'GT 21380187 Upstream 7bp
chr7 30890151 30890151 1 + A G GBM 30890148 + 30890128 30890168 41 ATTGTGTGGCGGGCAGGGGGCCGAGAGAGAGCCGTTGTTGC ATTGTGTGGCGGGCAGGGGGCCGGGAGAGAGCCGTTGTTGC < 41bp 0.467871011655803 0.723192817594923 0.8552395 0.9069164 prediction 0.446385635189846 Functional Gain - MINDY4 ENSG00000106125 CDS Human protein_coding chr7:30890148 chr7:30890151 synonymous SNV . 0 24 hm5C_associated_SNPs_118264 0 0 1 0 2 MINDY4 chr7:30890070 3'AG 30890070 Downstream 82bp
chr7 30890151 30890151 1 + A G GBM 30890148 + 30890128 30890168 41 ATTGTGTGGCGGGCAGGGGGCCGAGAGAGAGCCGTTGTTGC ATTGTGTGGCGGGCAGGGGGCCGGGAGAGAGCCGTTGTTGC < 41bp 0.467871011655803 0.723192817594923 0.8552395 0.9069164 prediction 0.446385635189846 Functional Gain - MINDY4 ENSG00000106125 CDS Human protein_coding chr7:30890148 chr7:30890151 synonymous SNV . 0 24 hm5C_associated_SNPs_118264 0 0 1 0 2 MINDY4 chr7:30890171 5'GT 30890171 Upstream 21bp
chr7 27835784 27835784 1 + C A SKCM 27835783 + 27835763 27835803 41 GGGGCAAGTCTGTGAAATGACCAAAGAAATTGCTGACAAAA GGGGCAAGTCTGTGAAATGACAAAAGAAATTGCTGACAAAA < 41bp 0.478166207279505 0.723189173300248 0.060045928 0.23935854 prediction 0.446378346600495 Functional Gain - TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27835783 chr7:27835784 synonymous SNV . 0 22 hm5C_associated_SNPs_118266 0 0 1 0 2 TAX1BP1 chr7:27835735 3'AG 27835735 Downstream 50bp
chr7 27835784 27835784 1 + C A SKCM 27835783 + 27835763 27835803 41 GGGGCAAGTCTGTGAAATGACCAAAGAAATTGCTGACAAAA GGGGCAAGTCTGTGAAATGACAAAAGAAATTGCTGACAAAA < 41bp 0.478166207279505 0.723189173300248 0.060045928 0.23935854 prediction 0.446378346600495 Functional Gain - TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27835783 chr7:27835784 synonymous SNV . 0 22 hm5C_associated_SNPs_118266 0 0 1 0 2 TAX1BP1 chr7:27835838 5'GT 27835838 Upstream 55bp
chr18 61647120 61647120 1 + T G rs111432786 61647118 + 61647098 61647138 41 AACAGAACTGGCACTCAGTACTTGCTTAGAACTGCCAACAG AACAGAACTGGCACTCAGTACTGGCTTAGAACTGCCAACAG < 41bp 0.389212470116475 0.723184791929309 0.02247262 0.07373983 prediction 0.446369583858618 Functional Gain - SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61647118 chr18:61647120 nonsynonymous SNV 0.718 4 23 hm5C_associated_SNPs_118268 0 0 0 0 2 SERPINB8 chr18:61647035 3'AG 61647035 Downstream 86bp
chr18 61647120 61647120 1 + T G rs111432786 61647118 + 61647098 61647138 41 AACAGAACTGGCACTCAGTACTTGCTTAGAACTGCCAACAG AACAGAACTGGCACTCAGTACTGGCTTAGAACTGCCAACAG < 41bp 0.389212470116475 0.723184791929309 0.02247262 0.07373983 prediction 0.446369583858618 Functional Gain - SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61647118 chr18:61647120 nonsynonymous SNV 0.718 4 23 hm5C_associated_SNPs_118268 0 0 0 0 2 SERPINB8 chr18:61647172 5'GT 61647172 Upstream 53bp
chr9 141109845 141109845 1 + T C COAD 141109843 + 141109823 141109863 41 GCGAGTTCTTTCGTCTCCTACATGACCTTCATCTGCTCGCG GCGAGTTCTTTCGTCTCCTACACGACCTTCATCTGCTCGCG < 41bp 0.483892350687008 0.72318189857261 0.15215266 0.0667775 prediction 0.44636379714522 Functional Gain - LOC101928932;NONE ENSG00000233013 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:141109843 chr9:141109845 . . 0 23 hm5C_associated_SNPs_118270 0 0 0 0 1 LOC101928932;NONE chr9:141109884 5'GT 141109884 Upstream 40bp
chr11 113848541 113848541 1 + A G rs528818878 113848538 + 113848518 113848558 41 GCCCGCTCTGCTGAGGCTGTCGGATTACCTTTTGACCAACT GCCCGCTCTGCTGAGGCTGTCGGGTTACCTTTTGACCAACT < 41bp 0.557829449370864 0.78101132346011 0.78985286 0.9112092 prediction 0.446363748178492 Functional Gain - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113848538 chr11:113848541 nonsynonymous SNV 0.156 0 24 hm5C_associated_SNPs_118271 0 0 0 1 1 HTR3A chr11:113848493 3'AG 113848493 Downstream 49bp
chr8 121295927 121295927 1 + C T LUAD 121295926 + 121295906 121295946 41 TACACAATCAGTTTTCTATTCCGGATTCTTCCTGACACTCC TACACAATCAGTTTTCTATTCTGGATTCTTCCTGACACTCC < 41bp 0.466760672072044 0.723174505515121 0.8397691 0.30174893 prediction 0.446349011030242 Functional Gain - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121295926 chr8:121295927 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_118274 0 0 0 0 2 COL14A1 chr8:121295875 3'AG 121295875 Downstream 53bp
chr8 121295927 121295927 1 + C T LUAD 121295926 + 121295906 121295946 41 TACACAATCAGTTTTCTATTCCGGATTCTTCCTGACACTCC TACACAATCAGTTTTCTATTCTGGATTCTTCCTGACACTCC < 41bp 0.466760672072044 0.723174505515121 0.8397691 0.30174893 prediction 0.446349011030242 Functional Gain - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121295926 chr8:121295927 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_118274 0 0 0 0 2 COL14A1 chr8:121296017 5'GT 121296017 Upstream 91bp
chr14 23946746 23946746 1 + C A UCEC 23946745 + 23946725 23946765 41 TTAAGAAGCGGAAGAAGATACCTCAGAAAGGTCGGAAGAAA TTAAGAAGCGGAAGAAGATACATCAGAAAGGTCGGAAGAAA < 41bp 0.473695997891036 0.723173233997583 0.122282416 0.066333115 prediction 0.446346467995165 Functional Gain - NGDN ENSG00000129460 CDS Human protein_coding chr14:23946745 chr14:23946746 nonsynonymous SNV 0.831 0 22 hm5C_associated_SNPs_118275 0 0 1 1 2 NGDN chr14:23946712 3'AG 23946712 Downstream 35bp
chr14 23946746 23946746 1 + C A UCEC 23946745 + 23946725 23946765 41 TTAAGAAGCGGAAGAAGATACCTCAGAAAGGTCGGAAGAAA TTAAGAAGCGGAAGAAGATACATCAGAAAGGTCGGAAGAAA < 41bp 0.473695997891036 0.723173233997583 0.122282416 0.066333115 prediction 0.446346467995165 Functional Gain - NGDN ENSG00000129460 CDS Human protein_coding chr14:23946745 chr14:23946746 nonsynonymous SNV 0.831 0 22 hm5C_associated_SNPs_118275 0 0 1 1 2 NGDN chr14:23946769 5'GT 23946769 Upstream 24bp
chr17 77040128 77040128 1 + T C rs4789922 77040126 + 77040106 77040146 41 CCTCTGGCCTGGTCCTGAGTCGTGTGCCCCATGTCCAGGGG CCTCTGGCCTGGTCCTGAGTCGCGTGCCCCATGTCCAGGGG < 41bp 0.600867721554207 0.824040943105275 0.3238219 0.34885448 prediction 0.446346443102137 Functional Gain - C1QTNF1 ENSG00000173918 CDS Human protein_coding chr17:77040126 chr17:77040128 synonymous SNV . 0 23 hm5C_associated_SNPs_118276 0 0 0 0 2 C1QTNF1 chr17:77040037 3'AG 77040037 Downstream 92bp
chr17 77040128 77040128 1 + T C rs4789922 77040126 + 77040106 77040146 41 CCTCTGGCCTGGTCCTGAGTCGTGTGCCCCATGTCCAGGGG CCTCTGGCCTGGTCCTGAGTCGCGTGCCCCATGTCCAGGGG < 41bp 0.600867721554207 0.824040943105275 0.3238219 0.34885448 prediction 0.446346443102137 Functional Gain - C1QTNF1 ENSG00000173918 CDS Human protein_coding chr17:77040126 chr17:77040128 synonymous SNV . 0 23 hm5C_associated_SNPs_118276 0 0 0 0 2 C1QTNF1 chr17:77040205 5'GT 77040205 Upstream 78bp
chr2 119739939 119739939 1 + C T SKCM 119739938 + 119739918 119739958 41 GTCCAGGACTTCCAGGGAGCCCCGGGAGTCCAGGAGCCACA GTCCAGGACTTCCAGGGAGCCTCGGGAGTCCAGGAGCCACA < 41bp 0.568686417713111 0.791858178170444 0.6551156 0.7064487 prediction 0.446343520914664 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119739938 chr2:119739939 nonsynonymous SNV 0.277 2 22 hm5C_associated_SNPs_118277 0 0 0 0 2 MARCO chr2:119739924 3'AG 119739924 Downstream 16bp
chr2 119739939 119739939 1 + C T SKCM 119739938 + 119739918 119739958 41 GTCCAGGACTTCCAGGGAGCCCCGGGAGTCCAGGAGCCACA GTCCAGGACTTCCAGGGAGCCTCGGGAGTCCAGGAGCCACA < 41bp 0.568686417713111 0.791858178170444 0.6551156 0.7064487 prediction 0.446343520914664 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119739938 chr2:119739939 nonsynonymous SNV 0.277 2 22 hm5C_associated_SNPs_118277 0 0 0 0 2 MARCO chr2:119739986 5'GT 119739986 Upstream 48bp
chr9 131115818 131115818 1 + C G HNSC 131115817 + 131115797 131115837 41 GCGTCTGCATTCCCTGCCAGCCAGGTCTGCCACTTCGGGGT GCGTCTGCATTCCCTGCCAGCGAGGTCTGCCACTTCGGGGT < 41bp 0.407484031274539 0.723161653145034 0.6152392 0.9237079 prediction 0.446323306290069 Functional Gain - SLC27A4 ENSG00000167114 CDS Human protein_coding chr9:131115817 chr9:131115818 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_118280 0 0 0 0 1 SLC27A4 chr9:131115820 5'GT 131115820 Upstream 3bp
chr17 31323984 31323984 1 + C T LUAD 31323983 + 31323963 31324003 41 GGTGGTGCAGCAACCTCACCCCGAACGTCCCCAACGTGTGC GGTGGTGCAGCAACCTCACCCTGAACGTCCCCAACGTGTGC < 41bp 0.547087504830835 0.770248030093611 0.09309763 0.08465588 prediction 0.446321050525552 Functional Gain - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31323983 chr17:31323984 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_118281 0 0 0 0 1 SPACA3 chr17:31324019 5'GT 31324019 Upstream 36bp
chr19 12088995 12088995 1 + C A THCA 12088994 + 12088974 12089014 41 CATTGTGGAGAAACTTTTACCCAGGTTCCAGATGACAGGCT CATTGTGGAGAAACTTTTACCAAGGTTCCAGATGACAGGCT < 41bp 0.473564167592234 0.723158999766325 0.24336186 0.46620092 prediction 0.446317999532649 Functional Gain - ZNF763 ENSG00000197054;ENSG00000267179 CDS Human other chr19:12088994 chr19:12088995 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_118282 0 0 0 0 1 ZNF763 chr19:12088931 3'AG 12088931 Downstream 65bp
chr11 119044752 119044752 1 + C T READ 119044751 + 119044731 119044771 41 TTTGTAGTGACCCGGAGGAACCGCAGGAACCAGCTGCTATC TTTGTAGTGACCCGGAGGAACTGCAGGAACCAGCTGCTATC < 41bp 0.591653204209573 0.814809852829016 0.3010708 0.4112398 prediction 0.446313297238885 Functional Gain - NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119044751 chr11:119044752 nonsynonymous SNV 0.067 2 22 hm5C_associated_SNPs_118284 1 0 0 0 1 NLRX1 chr11:119044807 5'GT 119044807 Upstream 56bp
chr14 103574001 103574001 1 + C T rs199568252 103574000 + 103573980 103574020 41 GAGGTGCACCGGTTCGTGGTCCGCGAGTACCTGGCGCGGGC GAGGTGCACCGGTTCGTGGTCTGCGAGTACCTGGCGCGGGC < 41bp 0.558975319428605 0.782128444445568 0.42060336 0.29086155 prediction 0.446306250033926 Functional Gain - EXOC3L4 ENSG00000205436 CDS Human protein_coding chr14:103574000 chr14:103574001 nonsynonymous SNV 0.666 4 22 hm5C_associated_SNPs_118285 0 0 1 0 1 EXOC3L4 chr14:103573968 3'AG 103573968 Downstream 34bp
chr16 56704437 56704437 1 + C T UCEC 56704436 + 56704416 56704456 41 AGGTGGCTCCTGCGCCTGCGCCGGCTCCTGCAAGTGCAAAA AGGTGGCTCCTGCGCCTGCGCTGGCTCCTGCAAGTGCAAAA < 41bp 0.521701213297993 0.74484836288133 0.16718522 0.075145185 prediction 0.446294299166673 Functional Gain - MT1H ENSG00000205358 CDS Human protein_coding chr16:56704436 chr16:56704437 synonymous SNV . 0 22 hm5C_associated_SNPs_118287 0 0 0 0 1 MT1H chr16:56704418 3'AG 56704418 Downstream 20bp
chr11 209331 209331 1 + C T SKCM 209330 + 209310 209350 41 GACCGGAAGGTGGGTGCTGGCCCAAGGGGTAAAGGGGCAGG GACCGGAAGGTGGGTGCTGGCTCAAGGGGTAAAGGGGCAGG < 41bp 0.547013541837833 0.770156153427439 0.35137033 0.46282858 prediction 0.446285223179211 Functional Gain - RIC8A ENSG00000177963 CDS Human protein_coding chr11:209330 chr11:209331 synonymous SNV . 0 22 hm5C_associated_SNPs_118288 0 0 1 0 1 RIC8A chr11:209271 3'AG 209271 Downstream 61bp
chr16 30780716 30780716 1 + C T rs201232201 30780715 + 30780695 30780735 41 GCAGGTCCTTGGCCTCAAGTCCCAGGTATGGCCGCCGCCAG GCAGGTCCTTGGCCTCAAGTCTCAGGTATGGCCGCCGCCAG < 41bp 0.582626297025003 0.805763124436257 0.1864376 0.059534997 prediction 0.446273654822507 Functional Gain - RNF40 ENSG00000103549 CDS Human protein_coding chr16:30780715 chr16:30780716 synonymous SNV . 0 22 hm5C_associated_SNPs_118289 0 0 1 0 1 RNF40 chr16:30780719 5'GT 30780719 Upstream 4bp
chr17 3563641 3563641 1 + C T UCEC 3563640 + 3563620 3563660 41 TCTGTTTGTACAGAAAGAGACCGGGGTATGACCAGCTGAAC TCTGTTTGTACAGAAAGAGACTGGGGTATGACCAGCTGAAC < 41bp 0.518121333435828 0.741256830854499 0.818081 0.7615961 prediction 0.446270994837344 Functional Gain - CTNS ENSG00000040531 CDS Human protein_coding chr17:3563640 chr17:3563641 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_118290 0 0 1 0 1 CTNS chr17:3563644 5'GT 3563644 Upstream 4bp
chr22 31591512 31591512 1 + C A rs61736799 31591511 + 31591491 31591531 41 GTTTGCAAAGCTGGCATCAGCCGAGACAAGGTCATCCCCCT GTTTGCAAAGCTGGCATCAGCAGAGACAAGGTCATCCCCCT < 41bp 0.468687953483602 0.723131495246061 0.65157473 0.87752247 prediction 0.446262990492123 Functional Gain - RNF185 ENSG00000138942 CDS Human protein_coding chr22:31591511 chr22:31591512 synonymous SNV . 0 22 hm5C_associated_SNPs_118292 0 0 0 0 2 RNF185 chr22:31591455 3'AG 31591455 Downstream 58bp
chr22 31591512 31591512 1 + C A rs61736799 31591511 + 31591491 31591531 41 GTTTGCAAAGCTGGCATCAGCCGAGACAAGGTCATCCCCCT GTTTGCAAAGCTGGCATCAGCAGAGACAAGGTCATCCCCCT < 41bp 0.468687953483602 0.723131495246061 0.65157473 0.87752247 prediction 0.446262990492123 Functional Gain - RNF185 ENSG00000138942 CDS Human protein_coding chr22:31591511 chr22:31591512 synonymous SNV . 0 22 hm5C_associated_SNPs_118292 0 0 0 0 2 RNF185 chr22:31591567 5'GT 31591567 Upstream 56bp
chr5 156741389 156741389 1 + A G UCEC 156741386 + 156741366 156741406 41 AGGGCTGGACAGCCAGAAGTCAGACGAGGAGTATCGCGAGC AGGGCTGGACAGCCAGAAGTCAGGCGAGGAGTATCGCGAGC < 41bp 0.565389326394472 0.788519807940504 0.8958155 0.9071442 prediction 0.446260963092066 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156741386 chr5:156741389 nonsynonymous SNV 0.974 1 24 hm5C_associated_SNPs_118293 0 0 0 0 2 CYFIP2 chr5:156741352 3'AG 156741352 Downstream 38bp
chr5 156741389 156741389 1 + A G UCEC 156741386 + 156741366 156741406 41 AGGGCTGGACAGCCAGAAGTCAGACGAGGAGTATCGCGAGC AGGGCTGGACAGCCAGAAGTCAGGCGAGGAGTATCGCGAGC < 41bp 0.565389326394472 0.788519807940504 0.8958155 0.9071442 prediction 0.446260963092066 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156741386 chr5:156741389 nonsynonymous SNV 0.974 1 24 hm5C_associated_SNPs_118293 0 0 0 0 2 CYFIP2 chr5:156741471 5'GT 156741471 Upstream 83bp
chr15 89195433 89195433 1 + C G ESCA 89195429 + 89195409 89195449 41 AGAGGACATGAGCGGCTACACAATCTACGACACGTCCACTG AGAGGACATGAGCGGCTACACAATGTACGACACGTCCACTG < 41bp 0.426887943359563 0.723117407666698 0.050343692 0.19949836 prediction 0.446234815333397 Functional Gain - ISG20 ENSG00000172183 CDS Human protein_coding chr15:89195429 chr15:89195433 nonsynonymous SNV 0.912 1 25 hm5C_associated_SNPs_118298 0 0 1 0 1 ISG20 chr15:89195341 3'AG 89195341 Downstream 93bp
chr10 96534867 96534867 1 + T C rs28399505 96534865 + 96534845 96534885 41 CTGTATTTTGGCCTGGAACGCATGGTGGTGCTGCATGGATA CTGTATTTTGGCCTGGAACGCACGGTGGTGCTGCATGGATA < 41bp 0.453687023509241 0.723111792130847 0.34273887 0.34162608 prediction 0.446223584261695 Functional Gain - CYP2C19 ENSG00000165841 CDS Human protein_coding chr10:96534865 chr10:96534867 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_118301 0 0 0 0 1 CYP2C19 chr10:96534815 3'AG 96534815 Downstream 53bp
chr5 170736726 170736726 1 + C A LIHC 170736722 + 170736702 170736742 41 GCCCTCCGTGCCCACGGTCTCCAGCCTTGGCGGTCTCAATT GCCCTCCGTGCCCACGGTCTCCAGACTTGGCGGTCTCAATT < 41bp 0.336975514485669 0.723111085595119 0.05059269 0.54929245 prediction 0.446222171190239 Functional Gain - TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736722 chr5:170736726 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_118302 0 0 0 0 1 TLX3 chr5:170736790 5'GT 170736790 Upstream 65bp
chr10 26800821 26800821 1 + C T CESC 26800820 + 26800800 26800840 41 GGTGTCTTTATGAAATCTACCCGGAACTACAAATTGGTAAG GGTGTCTTTATGAAATCTACCTGGAACTACAAATTGGTAAG < 41bp 0.571275443376887 0.794383793189819 0.21762547 0.1605401 prediction 0.446216699625865 Functional Gain - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26800820 chr10:26800821 nonsynonymous SNV 0.837 3 22 hm5C_associated_SNPs_118303 0 0 0 0 1 APBB1IP chr10:26800835 5'GT 26800835 Upstream 15bp
chr12 56076035 56076035 1 + C A BRCA 56076034 + 56076014 56076054 41 AGGTCCGGAGAGTACTGAGACCGGTAAGCAGGGTGGGAAGG AGGTCCGGAGAGTACTGAGACAGGTAAGCAGGGTGGGAAGG < 41bp 0.462235527077904 0.723102711578167 0.108119816 0.61393523 prediction 0.446205423156334 Functional Gain - METTL7B ENSG00000170439 CDS Human protein_coding chr12:56076034 chr12:56076035 nonsynonymous SNV 0.986 3 22 hm5C_associated_SNPs_118304 0 0 0 0 1 METTL7B chr12:56076036 5'GT 56076036 Upstream 2bp
chr8 72967999 72967999 1 - A G UCEC 72968002 - 72967982 72968022 41 TAGACAGGGGGGCCCTGGTTCTGTAAATAACCTACTTGGCT TAGACAGGGGGGCCCTGGTTCTGCAAATAACCTACTTGGCT < 41bp 0.498549417375195 0.723095437937289 0.08977035 0.18713492 prediction 0.446190875874579 Functional Gain - TRPA1 ENSG00000104321 CDS Human protein_coding chr8:72968002 chr8:72967999 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_118306 0 0 0 0 2 TRPA1 chr8:72967921 5'GT 72967921 Upstream 79bp
chr8 72967999 72967999 1 - A G UCEC 72968002 - 72967982 72968022 41 TAGACAGGGGGGCCCTGGTTCTGTAAATAACCTACTTGGCT TAGACAGGGGGGCCCTGGTTCTGCAAATAACCTACTTGGCT < 41bp 0.498549417375195 0.723095437937289 0.08977035 0.18713492 prediction 0.446190875874579 Functional Gain - TRPA1 ENSG00000104321 CDS Human protein_coding chr8:72968002 chr8:72967999 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_118306 0 0 0 0 2 TRPA1 chr8:72968090 3'AG 72968090 Downstream 92bp
chr6 36181735 36181735 1 + C T LUSC 36181734 + 36181714 36181754 41 TGTCTGAGCAAGAATCCCCCCCGGAGCCCCCTACTCTGAAA TGTCTGAGCAAGAATCCCCCCTGGAGCCCCCTACTCTGAAA < 41bp 0.590603574683737 0.813693905380828 0.10607517 0.090786725 prediction 0.446180661394181 Functional Gain - BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36181734 chr6:36181735 nonsynonymous SNV 0.422 0 22 hm5C_associated_SNPs_118309 0 0 1 0 1 BRPF3 chr6:36181657 3'AG 36181657 Downstream 79bp
chr20 34145273 34145273 1 + T C STAD 34145271 + 34145251 34145291 41 AATTGATCTAGGGAAGACAACGTAGTCACCCTCGGTGCTTC AATTGATCTAGGGAAGACAACGCAGTCACCCTCGGTGCTTC < 41bp 0.481673902524522 0.723087849071336 0.13807777 0.1840227 prediction 0.446175698142673 Functional Gain - ERGIC3 ENSG00000125991 CDS Human protein_coding chr20:34145271 chr20:34145273 stoploss 0.995 0 23 hm5C_associated_SNPs_118311 0 0 1 0 1 ERGIC3 chr20:34145196 3'AG 34145196 Downstream 78bp
chr5 139002988 139002988 1 + A G UCEC 139002985 + 139002965 139003005 41 TCTGTTCTCTGTTGTGTGATCCCAATCCAGATGATCCTTTA TCTGTTCTCTGTTGTGTGATCCCGATCCAGATGATCCTTTA < 41bp 0.51784439910404 0.740927097810095 0.048318475 0.119243324 prediction 0.446165397412111 Functional Gain - UBE2D2 ENSG00000131508 CDS Human protein_coding chr5:139002985 chr5:139002988 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_118313 0 0 1 0 2 UBE2D2 chr5:139002953 3'AG 139002953 Downstream 36bp
chr5 139002988 139002988 1 + A G UCEC 139002985 + 139002965 139003005 41 TCTGTTCTCTGTTGTGTGATCCCAATCCAGATGATCCTTTA TCTGTTCTCTGTTGTGTGATCCCGATCCAGATGATCCTTTA < 41bp 0.51784439910404 0.740927097810095 0.048318475 0.119243324 prediction 0.446165397412111 Functional Gain - UBE2D2 ENSG00000131508 CDS Human protein_coding chr5:139002985 chr5:139002988 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_118313 0 0 1 0 2 UBE2D2 chr5:139003046 5'GT 139003046 Upstream 59bp
chr17 33491121 33491121 1 + T C LUAD 33491118 + 33491098 33491138 41 CCTCTATCCTCATCAACAAGCTCTATGATGACCTGCGCTGT CCTCTATCCTCATCAACAAGCTCCATGATGACCTGCGCTGT < 41bp 0.489540403559779 0.723081206137326 0.5476544 0.66963047 prediction 0.446162412274653 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33491118 chr17:33491121 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_118314 0 0 0 0 1 UNC45B chr17:33491185 5'GT 33491185 Upstream 65bp
chr5 2753468 2753468 1 + C A UCEC 2753467 + 2753447 2753487 41 CCTCCTGAGCCGGCAGGCTCCCGGTAGGCGCGGTCCAGGCA CCTCCTGAGCCGGCAGGCTCCAGGTAGGCGCGGTCCAGGCA < 41bp 0.580224113950217 0.803305226647045 0.80681276 0.7934028 prediction 0.446162225393656 Functional Gain - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2753467 chr5:2753468 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_118315 0 0 0 0 2 C5orf38 chr5:2753399 3'AG 2753399 Downstream 70bp
chr5 2753468 2753468 1 + C A UCEC 2753467 + 2753447 2753487 41 CCTCCTGAGCCGGCAGGCTCCCGGTAGGCGCGGTCCAGGCA CCTCCTGAGCCGGCAGGCTCCAGGTAGGCGCGGTCCAGGCA < 41bp 0.580224113950217 0.803305226647045 0.80681276 0.7934028 prediction 0.446162225393656 Functional Gain - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2753467 chr5:2753468 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_118315 0 0 0 0 2 C5orf38 chr5:2753469 5'GT 2753469 Upstream 2bp
chr1 43233241 43233241 1 + C T LUAD 43233240 + 43233220 43233260 41 CCTGGTGAGCCCCTACCACACCCACCGGGCCGGGGACCCCT CCTGGTGAGCCCCTACCACACTCACCGGGCCGGGGACCCCT < 41bp 0.553983976147549 0.777064759770995 0.023715258 0.13729495 prediction 0.446161567246892 Functional Gain - C1orf50 ENSG00000164008 CDS Human protein_coding chr1:43233240 chr1:43233241 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_118316 0 0 0 0 2 C1orf50 chr1:43233180 3'AG 43233180 Downstream 62bp
chr1 43233241 43233241 1 + C T LUAD 43233240 + 43233220 43233260 41 CCTGGTGAGCCCCTACCACACCCACCGGGCCGGGGACCCCT CCTGGTGAGCCCCTACCACACTCACCGGGCCGGGGACCCCT < 41bp 0.553983976147549 0.777064759770995 0.023715258 0.13729495 prediction 0.446161567246892 Functional Gain - C1orf50 ENSG00000164008 CDS Human protein_coding chr1:43233240 chr1:43233241 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_118316 0 0 0 0 2 C1orf50 chr1:43233295 5'GT 43233295 Upstream 55bp
chr7 141755404 141755404 1 + C A LIHC 141755403 + 141755383 141755423 41 ACCTTCAGTGACATGTTTATCCGCATCTCCACCCGCCTTCC ACCTTCAGTGACATGTTTATCAGCATCTCCACCCGCCTTCC < 41bp 0.588192458768239 0.811270692168557 0.041643947 0.1634889 prediction 0.446156466800635 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141755403 chr7:141755404 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_118318 0 0 0 0 1 MGAM chr7:141755358 3'AG 141755358 Downstream 47bp
chr9 130570894 130570894 1 + A G rs2230270 130570891 + 130570871 130570911 41 TCGAGGAAGGGGGGCCGCCGCTGACCCTGGGCCTGGAGGGG TCGAGGAAGGGGGGCCGCCGCTGGCCCTGGGCCTGGAGGGG < 41bp 0.59037120842687 0.813446245996485 0.5861335 0.7592697 prediction 0.446150075139229 Functional Gain - FPGS ENSG00000136877 CDS Human protein_coding chr9:130570891 chr9:130570894 nonsynonymous SNV 0.106 0 24 hm5C_associated_SNPs_118320 0 0 1 0 1 FPGS chr9:130570984 5'GT 130570984 Upstream 91bp
chr1 197889248 197889248 1 + C T GBM 197889247 + 197889227 197889267 41 ATGTAAGCTGGCCCTCGAGTCCGAGCTCACCTGCTTTGCCA ATGTAAGCTGGCCCTCGAGTCTGAGCTCACCTGCTTTGCCA < 41bp 0.563378577018618 0.786452707987079 0.114430726 0.13894215 prediction 0.446148261936921 Functional Gain - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197889247 chr1:197889248 synonymous SNV . 0 22 hm5C_associated_SNPs_118321 0 0 0 0 1 LHX9 chr1:197889304 5'GT 197889304 Upstream 57bp
chr2 202700399 202700399 1 + C A rs34851370 202700395 + 202700375 202700415 41 GGGCCAAGTCCATTCCCAGCCAGACATACTCTTCAGAAGTC GGGCCAAGTCCATTCCCAGCCAGAAATACTCTTCAGAAGTC < 41bp 0.305515464692114 0.723062707798209 0.30311224 0.88900733 prediction 0.446125415596418 Functional Gain - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202700395 chr2:202700399 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_118324 0 0 0 0 2 CDK15 chr2:202700366 3'AG 202700366 Downstream 34bp
chr2 202700399 202700399 1 + C A rs34851370 202700395 + 202700375 202700415 41 GGGCCAAGTCCATTCCCAGCCAGACATACTCTTCAGAAGTC GGGCCAAGTCCATTCCCAGCCAGAAATACTCTTCAGAAGTC < 41bp 0.305515464692114 0.723062707798209 0.30311224 0.88900733 prediction 0.446125415596418 Functional Gain - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202700395 chr2:202700399 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_118324 0 0 0 0 2 CDK15 chr2:202700486 5'GT 202700486 Upstream 88bp
chr16 84485598 84485598 1 + C T SKCM 84485597 + 84485577 84485617 41 CTTGTGGGCATCATTGACCCCCCGAGAGTTGGCGTGAAGGA CTTGTGGGCATCATTGACCCCTCGAGAGTTGGCGTGAAGGA < 41bp 0.610585207339128 0.833629864887164 0.06285408 0.5428323 prediction 0.44608931509607 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84485597 chr16:84485598 nonsynonymous SNV 0.039 5 22 hm5C_associated_SNPs_118328 0 0 0 0 2 ATP2C2 chr16:84485527 3'AG 84485527 Downstream 72bp
chr16 84485598 84485598 1 + C T SKCM 84485597 + 84485577 84485617 41 CTTGTGGGCATCATTGACCCCCCGAGAGTTGGCGTGAAGGA CTTGTGGGCATCATTGACCCCTCGAGAGTTGGCGTGAAGGA < 41bp 0.610585207339128 0.833629864887164 0.06285408 0.5428323 prediction 0.44608931509607 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84485597 chr16:84485598 nonsynonymous SNV 0.039 5 22 hm5C_associated_SNPs_118328 0 0 0 0 2 ATP2C2 chr16:84485697 5'GT 84485697 Upstream 100bp
chr11 12278458 12278458 1 + C T COAD 12278457 + 12278437 12278477 41 TTCTTCCACCGGGAGTGTTTCCGCTGCAGCATCTGTGCCAC TTCTTCCACCGGGAGTGTTTCTGCTGCAGCATCTGTGCCAC < 41bp 0.460028378774641 0.723040118256531 0.35014588 0.415826 prediction 0.446080236513061 Functional Gain - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12278457 chr11:12278458 nonsynonymous SNV 0.296 3 22 hm5C_associated_SNPs_118329 0 0 1 0 1 MICAL2 chr11:12278518 5'GT 12278518 Upstream 61bp
chr17 26851028 26851028 1 + C T UCEC 26851027 + 26851007 26851047 41 CGCAGTCTGACGTCACGCTGCCGGGCCCCACCAGACTGGAG CGCAGTCTGACGTCACGCTGCTGGGCCCCACCAGACTGGAG < 41bp 0.525699756335278 0.74873846773694 0.37848914 0.17283821 prediction 0.446077422803323 Functional Gain - FOXN1 ENSG00000109101 CDS Human protein_coding chr17:26851027 chr17:26851028 nonsynonymous SNV 0.330 1 22 hm5C_associated_SNPs_118330 0 0 0 0 1 FOXN1 chr17:26850974 3'AG 26850974 Downstream 55bp
chr19 39123298 39123298 1 + A G STAD 39123295 + 39123275 39123315 41 CATTGACCGCTGGCTGCTGGCCGAGATGCTCGGGGATCTGT CATTGACCGCTGGCTGCTGGCCGGGATGCTCGGGGATCTGT < 41bp 0.557325519575317 0.780363734953369 0.47236368 0.899264 prediction 0.446076430756104 Functional Gain - EIF3K ENSG00000178982 CDS Human protein_coding chr19:39123295 chr19:39123298 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_118331 0 0 1 0 2 EIF3K chr19:39123241 3'AG 39123241 Downstream 58bp
chr19 39123298 39123298 1 + A G STAD 39123295 + 39123275 39123315 41 CATTGACCGCTGGCTGCTGGCCGAGATGCTCGGGGATCTGT CATTGACCGCTGGCTGCTGGCCGGGATGCTCGGGGATCTGT < 41bp 0.557325519575317 0.780363734953369 0.47236368 0.899264 prediction 0.446076430756104 Functional Gain - EIF3K ENSG00000178982 CDS Human protein_coding chr19:39123295 chr19:39123298 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_118331 0 0 1 0 2 EIF3K chr19:39123318 5'GT 39123318 Upstream 21bp
chr4 100528068 100528068 1 + T A SKCM 100528064 + 100528044 100528084 41 CAGGAGAAGGGCCCATCAGCCACCTGGCTACCACTGCTCTC CAGGAGAAGGGCCCATCAGCCACCAGGCTACCACTGCTCTC < 41bp 0.673576327896881 0.89661159605596 0.19906554 0.33565134 prediction 0.446070536318159 Functional Gain - MTTP ENSG00000138823 CDS Human protein_coding chr4:100528064 chr4:100528068 nonsynonymous SNV 0.508 4 25 hm5C_associated_SNPs_118334 0 0 1 0 1 MTTP chr4:100528117 5'GT 100528117 Upstream 50bp
chr9 21854717 21854717 1 + C G ESCA 21854716 + 21854696 21854736 41 GAGGGACCTCGTTTTAGCTCCCGGGCAGAAAGCTTCATGTT GAGGGACCTCGTTTTAGCTCCGGGGCAGAAAGCTTCATGTT < 41bp 0.41126925927174 0.723034177903106 0.14374778 0.49171105 prediction 0.446068355806212 Functional Gain - MTAP ENSG00000099810 CDS Human protein_coding chr9:21854716 chr9:21854717 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_118336 0 0 1 0 1 MTAP chr9:21854630 3'AG 21854630 Downstream 88bp
chr5 56527097 56527097 1 + C T STAD 56527096 + 56527076 56527116 41 CAACATACCTGACAATGAAACCGGGAGGAAAGAAGACAAGA CAACATACCTGACAATGAAACTGGGAGGAAAGAAGACAAGA < 41bp 0.53761187051832 0.760641175547473 0.21014008 0.23331645 prediction 0.446058610058306 Functional Gain - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56527096 chr5:56527097 synonymous SNV . 0 22 hm5C_associated_SNPs_118338 0 0 1 0 1 GPBP1 chr5:56527148 5'GT 56527148 Upstream 52bp
chr1 40872508 40872508 1 + T A KIRC 40872504 + 40872484 40872524 41 GCACATATCCAGGGTAAAGTCAGTTAACCTCGACCAGTGGA GCACATATCCAGGGTAAAGTCAGTAAACCTCGACCAGTGGA < 41bp 0.434975452693672 0.723024542297219 0.6930342 0.7477217 prediction 0.446049084594438 Functional Gain - SMAP2 ENSG00000084070 CDS Human protein_coding chr1:40872504 chr1:40872508 synonymous SNV . 0 25 hm5C_associated_SNPs_118339 0 0 1 0 1 SMAP2 chr1:40872541 5'GT 40872541 Upstream 34bp
chr15 40648330 40648330 1 + T C MESO 40648328 + 40648308 40648348 41 CAGGTCACTGCGGGCCACCCCCTGGCCATGGCCCAGGGCCC CAGGTCACTGCGGGCCACCCCCCGGCCATGGCCCAGGGCCC < 41bp 0.493377601245905 0.723023076743408 0.13751355 0.16532785 prediction 0.446046153486815 Functional Gain - PHGR1 ENSG00000233041 CDS Human protein_coding chr15:40648328 chr15:40648330 synonymous SNV . 0 23 hm5C_associated_SNPs_118342 0 0 0 0 1 PHGR1 chr15:40648274 3'AG 40648274 Downstream 57bp
chr11 33049357 33049357 1 + A G HNSC 33049354 + 33049334 33049374 41 TATCTCTGCAACCTTGTCTCCACAAGGTAAGCTAAGGATGA TATCTCTGCAACCTTGTCTCCACGAGGTAAGCTAAGGATGA < 41bp 0.509468930146886 0.732486753964628 0.41543877 0.6403048 prediction 0.446035647635484 Functional Gain - DEPDC7 ENSG00000121690 CDS Human protein_coding chr11:33049354 chr11:33049357 nonsynonymous SNV 0.577 0 24 hm5C_associated_SNPs_118344 0 0 0 0 1 DEPDC7 chr11:33049359 5'GT 33049359 Upstream 3bp
chr17 40125570 40125570 1 + C T COAD 40125569 + 40125549 40125589 41 GACACCCAAGACGACTGGGGCCCGGGTGGAGTTAAGCGAGC GACACCCAAGACGACTGGGGCTCGGGTGGAGTTAAGCGAGC < 41bp 0.467636767015485 0.723017801191579 0.3346244 0.32337323 prediction 0.446035602383158 Functional Gain - CNP ENSG00000173786 CDS Human protein_coding chr17:40125569 chr17:40125570 synonymous SNV . 0 22 hm5C_associated_SNPs_118345 0 0 1 0 1 CNP chr17:40125493 3'AG 40125493 Downstream 78bp
chr11 118520812 118520812 1 + C T SARC 118520811 + 118520791 118520831 41 CTGACCCGCTACCTGCCAATCCGGAAGGAGGACTTTGACCT CTGACCCGCTACCTGCCAATCTGGAAGGAGGACTTTGACCT < 41bp 0.587445789176893 0.810456242061316 0.4578775 0.29639402 prediction 0.446020905768846 Functional Gain - PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118520811 chr11:118520812 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_118348 0 0 1 0 2 PHLDB1 chr11:118520782 3'AG 118520782 Downstream 31bp
chr11 118520812 118520812 1 + C T SARC 118520811 + 118520791 118520831 41 CTGACCCGCTACCTGCCAATCCGGAAGGAGGACTTTGACCT CTGACCCGCTACCTGCCAATCTGGAAGGAGGACTTTGACCT < 41bp 0.587445789176893 0.810456242061316 0.4578775 0.29639402 prediction 0.446020905768846 Functional Gain - PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118520811 chr11:118520812 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_118348 0 0 1 0 2 PHLDB1 chr11:118520898 5'GT 118520898 Upstream 87bp
chr10 73121768 73121768 1 + C T rs61737431 73121767 + 73121747 73121787 41 TTCTGGTGAAGAGGAGCTTCCCCAGGACTCCCTCAGTGCCC TTCTGGTGAAGAGGAGCTTCCTCAGGACTCCCTCAGTGCCC < 41bp 0.490953041605021 0.72300998848468 0.18094534 0.10840684 prediction 0.446019976969361 Functional Gain - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73121767 chr10:73121768 synonymous SNV . 0 22 hm5C_associated_SNPs_118349 2 0 0 0 1 SLC29A3 chr10:73121711 3'AG 73121711 Downstream 58bp
chr1 161088991 161088991 1 + T C UCEC 161088989 + 161088969 161089009 41 GGTGGCTGTGTGCCAGGTAACATCGACGCCAGACAAGCAAC GGTGGCTGTGTGCCAGGTAACACCGACGCCAGACAAGCAAC < 41bp 0.627692827516503 0.850698871048601 0.19510788 0.22265467 prediction 0.446012087064196 Functional Gain - NIT1 ENSG00000158793 CDS Human protein_coding chr1:161088989 chr1:161088991 nonsynonymous SNV 0.985 5 23 hm5C_associated_SNPs_118352 0 0 1 0 1 NIT1 chr1:161088924 3'AG 161088924 Downstream 68bp
chr5 147553847 147553847 1 + C G HNSC 147553843 + 147553823 147553863 41 CTTGAGCTGGTACAATGGAACGGTCAACCCCTGCCCTGGCT CTTGAGCTGGTACAATGGAACGGTGAACCCCTGCCCTGGCT < 41bp 0.420986298329877 0.723004970547967 0.23692772 0.36341792 prediction 0.446009941095934 Functional Gain - SPINK14 ENSG00000196800 CDS Human protein_coding chr5:147553843 chr5:147553847 synonymous SNV . 0 25 hm5C_associated_SNPs_118353 0 0 0 0 2 SPINK14 chr5:147553797 3'AG 147553797 Downstream 51bp
chr5 147553847 147553847 1 + C G HNSC 147553843 + 147553823 147553863 41 CTTGAGCTGGTACAATGGAACGGTCAACCCCTGCCCTGGCT CTTGAGCTGGTACAATGGAACGGTGAACCCCTGCCCTGGCT < 41bp 0.420986298329877 0.723004970547967 0.23692772 0.36341792 prediction 0.446009941095934 Functional Gain - SPINK14 ENSG00000196800 CDS Human protein_coding chr5:147553843 chr5:147553847 synonymous SNV . 0 25 hm5C_associated_SNPs_118353 0 0 0 0 2 SPINK14 chr5:147553933 5'GT 147553933 Upstream 87bp
chr15 83796213 83796213 1 + C A UCEC 83796209 + 83796189 83796229 41 TGCCTGACATCACATTGATACATGCTGGAGGTCTGGCTCAG TGCCTGACATCACATTGATACATGATGGAGGTCTGGCTCAG < 41bp 0.312806393295483 0.722992998929999 0.19578609 0.22561604 prediction 0.445985997859999 Functional Gain - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83796209 chr15:83796213 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_118359 0 0 0 1 1 TM6SF1 chr15:83796229 5'GT 83796229 Upstream 17bp
chr12 124171430 124171430 1 + C T STAD 124171429 + 124171409 124171449 41 GTTCAGACGGTCCTGCTTCACCGGCGTGTTTGGAGGAGACG GTTCAGACGGTCCTGCTTCACTGGCGTGTTTGGAGGAGACG < 41bp 0.541707605081423 0.764692467032499 0.604877 0.31655753 prediction 0.445969723902151 Functional Gain - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124171429 chr12:124171430 synonymous SNV . 0 22 hm5C_associated_SNPs_118363 0 0 1 0 1 TCTN2 chr12:124171383 3'AG 124171383 Downstream 48bp
chr6 35196462 35196462 1 + C A LUSC 35196461 + 35196441 35196481 41 GTCAACATCCCTGGCAATTACCGGTGTACCTGCTATGATGG GTCAACATCCCTGGCAATTACAGGTGTACCTGCTATGATGG < 41bp 0.450838688714475 0.722978999149301 0.86067235 0.8986529 prediction 0.445957998298603 Functional Gain - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35196461 chr6:35196462 synonymous SNV . 0 22 hm5C_associated_SNPs_118366 0 0 0 0 2 SCUBE3 chr6:35196391 3'AG 35196391 Downstream 72bp
chr6 35196462 35196462 1 + C A LUSC 35196461 + 35196441 35196481 41 GTCAACATCCCTGGCAATTACCGGTGTACCTGCTATGATGG GTCAACATCCCTGGCAATTACAGGTGTACCTGCTATGATGG < 41bp 0.450838688714475 0.722978999149301 0.86067235 0.8986529 prediction 0.445957998298603 Functional Gain - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35196461 chr6:35196462 synonymous SNV . 0 22 hm5C_associated_SNPs_118366 0 0 0 0 2 SCUBE3 chr6:35196516 5'GT 35196516 Upstream 55bp
chr19 16339629 16339629 1 + C T SKCM 16339628 + 16339608 16339648 41 ACAGCCAACAACGTGGAGATCCACATTCCCGTGCCCAATGA ACAGCCAACAACGTGGAGATCTACATTCCCGTGCCCAATGA < 41bp 0.609183032749349 0.832161106344563 0.12761247 0.9355905 prediction 0.445956147190427 Functional Gain - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16339628 chr19:16339629 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_118367 0 0 1 0 1 AP1M1 chr19:16339581 3'AG 16339581 Downstream 49bp
chr2 98994246 98994246 1 + C T rs139544302 98994245 + 98994225 98994265 41 CTCCGGGCAGGGCTCCTTCACCGGCCAGGGGATCGCCAGGT CTCCGGGCAGGGCTCCTTCACTGGCCAGGGGATCGCCAGGT < 41bp 0.525209410894998 0.748185163850391 0.36082888 0.2413272 prediction 0.445951505910786 Functional Gain - CNGA3 ENSG00000144191 CDS Human protein_coding chr2:98994245 chr2:98994246 synonymous SNV . 0 22 hm5C_associated_SNPs_118368 1 0 0 0 2 CNGA3 chr2:98994150 3'AG 98994150 Downstream 97bp
chr2 98994246 98994246 1 + C T rs139544302 98994245 + 98994225 98994265 41 CTCCGGGCAGGGCTCCTTCACCGGCCAGGGGATCGCCAGGT CTCCGGGCAGGGCTCCTTCACTGGCCAGGGGATCGCCAGGT < 41bp 0.525209410894998 0.748185163850391 0.36082888 0.2413272 prediction 0.445951505910786 Functional Gain - CNGA3 ENSG00000144191 CDS Human protein_coding chr2:98994245 chr2:98994246 synonymous SNV . 0 22 hm5C_associated_SNPs_118368 1 0 0 0 2 CNGA3 chr2:98994263 5'GT 98994263 Upstream 18bp
chr1 151140771 151140771 1 + C A OV 151140770 + 151140750 151140790 41 TCAGCCCCTGCACCCATGAGCCCCACAAGAAGACGAGCCCT TCAGCCCCTGCACCCATGAGCACCACAAGAAGACGAGCCCT < 41bp 0.46028075176659 0.722975428148406 0.010978192 0.03921327 prediction 0.445950856296811 Functional Gain - SCNM1;TNFAIP8L2-SCNM1 ENSG00000163156 CDS Human protein_coding chr1:151140770 chr1:151140771 nonsynonymous SNV 0.681 1 22 hm5C_associated_SNPs_118369 0 0 1 0 1 SCNM1;TNFAIP8L2-SCNM1 chr1:151140814 5'GT 151140814 Upstream 44bp
chr1 151553436 151553436 1 + C A STAD 151553435 + 151553415 151553455 41 CAGAATTTAGAGATGCATGACCGGATGGAACACCTGATAGA CAGAATTTAGAGATGCATGACAGGATGGAACACCTGATAGA < 41bp 0.465167640358619 0.72296670212305 0.27763152 0.26149946 prediction 0.4459334042461 Functional Gain - TUFT1 ENSG00000143367 CDS Human protein_coding chr1:151553435 chr1:151553436 synonymous SNV . 0 22 hm5C_associated_SNPs_118370 0 0 1 0 2 TUFT1 chr1:151553418 3'AG 151553418 Downstream 19bp
chr1 151553436 151553436 1 + C A STAD 151553435 + 151553415 151553455 41 CAGAATTTAGAGATGCATGACCGGATGGAACACCTGATAGA CAGAATTTAGAGATGCATGACAGGATGGAACACCTGATAGA < 41bp 0.465167640358619 0.72296670212305 0.27763152 0.26149946 prediction 0.4459334042461 Functional Gain - TUFT1 ENSG00000143367 CDS Human protein_coding chr1:151553435 chr1:151553436 synonymous SNV . 0 22 hm5C_associated_SNPs_118370 0 0 1 0 2 TUFT1 chr1:151553518 5'GT 151553518 Upstream 83bp
chr19 4267768 4267768 1 + C T SKCM 4267767 + 4267747 4267787 41 CAGCCTCAGGCGGCCCCCACCCCAGGTAAGGTCACAGAGTT CAGCCTCAGGCGGCCCCCACCTCAGGTAAGGTCACAGAGTT < 41bp 0.473628109125412 0.72296561034703 0.133091 0.12471029 prediction 0.44593122069406 Functional Gain - CCDC94 ENSG00000105248 CDS Human protein_coding chr19:4267767 chr19:4267768 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_118372 0 0 0 0 1 CCDC94 chr19:4267771 5'GT 4267771 Upstream 4bp
chr22 50961552 50961552 1 + C A LIHC 50961548 + 50961528 50961568 41 TTGCGGAGCTGGTGGCTGGCCAGCCGGCCTTCGAGGTGTGT TTGCGGAGCTGGTGGCTGGCCAGCAGGCCTTCGAGGTGTGT < 41bp 0.307742018293464 0.72295649672162 0.31876573 0.3198732 prediction 0.44591299344324 Functional Gain - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50961548 chr22:50961552 nonsynonymous SNV 0.930 2 25 hm5C_associated_SNPs_118374 0 0 1 0 1 NCAPH2 chr22:50961595 5'GT 50961595 Upstream 44bp
chr17 79080582 79080582 1 + C A LGG 79080581 + 79080561 79080601 41 AGCAGCAGCACGGGCAACCTCCTGGACAAGGACGACCTGGC AGCAGCAGCACGGGCAACCTCATGGACAAGGACGACCTGGC < 41bp 0.476797951038767 0.722955177597587 0.56519413 0.5426137 prediction 0.445910355195174 Functional Gain - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080581 chr17:79080582 nonsynonymous SNV 0.681 2 22 hm5C_associated_SNPs_118376 0 0 0 0 1 BAIAP2 chr17:79080545 3'AG 79080545 Downstream 38bp
chr1 212619202 212619202 1 + C A LGG 212619201 + 212619181 212619221 41 ACGGCCAAGGAACTGGAGGCCCTGGATGAGGTCTTCACCAA ACGGCCAAGGAACTGGAGGCCATGGATGAGGTCTTCACCAA < 41bp 0.468944919857207 0.722945296288812 0.46209002 0.4384293 prediction 0.445890592577624 Functional Gain - NENF ENSG00000117691 CDS Human protein_coding chr1:212619201 chr1:212619202 nonsynonymous SNV 0.736 4 22 hm5C_associated_SNPs_118379 0 0 1 1 1 NENF chr1:212619172 3'AG 212619172 Downstream 31bp
chr19 42224097 42224097 1 + C T rs141974793 42224096 + 42224076 42224116 41 CAGAACTCAGTGAGTGCAAACCGCAGTGACCCAGTCACCCT CAGAACTCAGTGAGTGCAAACTGCAGTGACCCAGTCACCCT < 41bp 0.577742197052008 0.800676518144375 0.106145054 0.15104112 prediction 0.445868642184734 Functional Gain - CEACAM5 ENSG00000105388 CDS Human protein_coding chr19:42224096 chr19:42224097 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_118382 0 0 0 0 1 CEACAM5 chr19:42224127 5'GT 42224127 Upstream 31bp
chr19 49619582 49619582 1 + C T LUAD 49619581 + 49619561 49619601 41 TCCCAGGGTAGTGGAGCTACCCAAGACGGATGAGGGCCTAG TCCCAGGGTAGTGGAGCTACCTAAGACGGATGAGGGCCTAG < 41bp 0.478387896331406 0.722933519915705 0.26034993 0.22556508 prediction 0.44586703983141 Functional Gain - LIN7B ENSG00000104863 CDS Human protein_coding chr19:49619581 chr19:49619582 synonymous SNV . 0 22 hm5C_associated_SNPs_118383 0 0 0 0 1 LIN7B chr19:49619520 3'AG 49619520 Downstream 63bp
chr16 84476175 84476175 1 + C T UCEC 84476174 + 84476154 84476194 41 CGCCGTGATGGGGCAGCCCACCGAGGGTGCATTGATGGCCC CGCCGTGATGGGGCAGCCCACTGAGGGTGCATTGATGGCCC < 41bp 0.585752233464647 0.808685619810981 0.7754407 0.7730213 prediction 0.445866772692668 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84476174 chr16:84476175 synonymous SNV . 0 22 hm5C_associated_SNPs_118384 0 0 0 0 2 ATP2C2 chr16:84476116 3'AG 84476116 Downstream 60bp
chr16 84476175 84476175 1 + C T UCEC 84476174 + 84476154 84476194 41 CGCCGTGATGGGGCAGCCCACCGAGGGTGCATTGATGGCCC CGCCGTGATGGGGCAGCCCACTGAGGGTGCATTGATGGCCC < 41bp 0.585752233464647 0.808685619810981 0.7754407 0.7730213 prediction 0.445866772692668 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84476174 chr16:84476175 synonymous SNV . 0 22 hm5C_associated_SNPs_118384 0 0 0 0 2 ATP2C2 chr16:84476205 5'GT 84476205 Upstream 31bp
chr9 139309089 139309089 1 + C T BLCA 139309088 + 139309068 139309108 41 GGCTGATGTGGTTCTGCAGCCCCGGCTAACAGGTGTGGATC GGCTGATGTGGTTCTGCAGCCTCGGCTAACAGGTGTGGATC < 41bp 0.526875970357044 0.749803962080476 0.4357304 0.28848818 prediction 0.445855983446865 Functional Gain - PMPCA ENSG00000165688 CDS Human protein_coding chr9:139309088 chr9:139309089 synonymous SNV . 0 22 hm5C_associated_SNPs_118387 0 0 1 0 3 PMPCA;PMPCA chr9:139309005 3'AG 139309005 Downstream 85bp
chr9 139309089 139309089 1 + C T BLCA 139309088 + 139309068 139309108 41 GGCTGATGTGGTTCTGCAGCCCCGGCTAACAGGTGTGGATC GGCTGATGTGGTTCTGCAGCCTCGGCTAACAGGTGTGGATC < 41bp 0.526875970357044 0.749803962080476 0.4357304 0.28848818 prediction 0.445855983446865 Functional Gain - PMPCA ENSG00000165688 CDS Human protein_coding chr9:139309088 chr9:139309089 synonymous SNV . 0 22 hm5C_associated_SNPs_118387 0 0 1 0 3 PMPCA chr9:139309007 3'AG 139309007 Downstream 83bp
chr9 139309089 139309089 1 + C T BLCA 139309088 + 139309068 139309108 41 GGCTGATGTGGTTCTGCAGCCCCGGCTAACAGGTGTGGATC GGCTGATGTGGTTCTGCAGCCTCGGCTAACAGGTGTGGATC < 41bp 0.526875970357044 0.749803962080476 0.4357304 0.28848818 prediction 0.445855983446865 Functional Gain - PMPCA ENSG00000165688 CDS Human protein_coding chr9:139309088 chr9:139309089 synonymous SNV . 0 22 hm5C_associated_SNPs_118387 0 0 1 0 3 PMPCA chr9:139309099 5'GT 139309099 Upstream 11bp
chr2 103324656 103324656 1 + C A GBM 103324655 + 103324635 103324675 41 CCAGAGCCAGGCGCTTCTTGCCAGAACAGTTCTCCAAGAAA CCAGAGCCAGGCGCTTCTTGCAAGAACAGTTCTCCAAGAAA < 41bp 0.461292705557988 0.722915474946911 0.1341703 0.5185066 prediction 0.445830949893822 Functional Gain - SLC9A2 ENSG00000115616 CDS Human protein_coding chr2:103324655 chr2:103324656 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_118390 0 0 0 0 1 SLC9A2 chr2:103324578 3'AG 103324578 Downstream 79bp
chr2 232026138 232026138 1 + A G STAD 232026135 + 232026115 232026155 41 GGTTGGCGTCCTTGTATTTACCCAGTTTTGGTTCTGGTTTC GGTTGGCGTCCTTGTATTTACCCGGTTTTGGTTCTGGTTTC < 41bp 0.55530810052018 0.778218195430688 0.080608726 0.22832063 prediction 0.445820189821014 Functional Gain - PSMD1 ENSG00000173692 CDS Human protein_coding chr2:232026135 chr2:232026138 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_118391 0 0 1 0 2 PSMD1 chr2:232026054 3'AG 232026054 Downstream 85bp
chr2 232026138 232026138 1 + A G STAD 232026135 + 232026115 232026155 41 GGTTGGCGTCCTTGTATTTACCCAGTTTTGGTTCTGGTTTC GGTTGGCGTCCTTGTATTTACCCGGTTTTGGTTCTGGTTTC < 41bp 0.55530810052018 0.778218195430688 0.080608726 0.22832063 prediction 0.445820189821014 Functional Gain - PSMD1 ENSG00000173692 CDS Human protein_coding chr2:232026135 chr2:232026138 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_118391 0 0 1 0 2 PSMD1 chr2:232026223 5'GT 232026223 Upstream 86bp
chr17 48741125 48741125 1 + T C UCEC 48741123 + 48741103 48741143 41 GGGCTGATGTTCCTGTGCTCCATGATGCAGTCGCTGATCTT GGGCTGATGTTCCTGTGCTCCACGATGCAGTCGCTGATCTT < 41bp 0.441465570982928 0.722904894182078 0.17614067 0.10867876 prediction 0.445809788364155 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48741123 chr17:48741125 nonsynonymous SNV 0.684 1 23 hm5C_associated_SNPs_118392 0 0 0 0 2 ABCC3 chr17:48741042 3'AG 48741042 Downstream 84bp
chr17 48741125 48741125 1 + T C UCEC 48741123 + 48741103 48741143 41 GGGCTGATGTTCCTGTGCTCCATGATGCAGTCGCTGATCTT GGGCTGATGTTCCTGTGCTCCACGATGCAGTCGCTGATCTT < 41bp 0.441465570982928 0.722904894182078 0.17614067 0.10867876 prediction 0.445809788364155 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48741123 chr17:48741125 nonsynonymous SNV 0.684 1 23 hm5C_associated_SNPs_118392 0 0 0 0 2 ABCC3 chr17:48741219 5'GT 48741219 Upstream 95bp
chr2 238449573 238449573 1 + C G STAD 238449569 + 238449549 238449589 41 GGAGGACAGAGTGGCAGTGACGGCCTCAGAAGTCCAGCAGG GGAGGACAGAGTGGCAGTGACGGCGTCAGAAGTCCAGCAGG < 41bp 0.638754918680466 0.86165636508525 0.6024287 0.8920324 prediction 0.445802892809569 Functional Gain - MLPH ENSG00000115648 CDS Human protein_coding chr2:238449569 chr2:238449573 synonymous SNV . 0 25 hm5C_associated_SNPs_118393 0 0 0 0 1 MLPH chr2:238449600 5'GT 238449600 Upstream 28bp
chr1 16373135 16373135 1 + A G STAD 16373132 + 16373112 16373152 41 CTCTTTCTCTTCAGGCTTCTCTCAGAGCATCACACCCTCCT CTCTTTCTCTTCAGGCTTCTCTCGGAGCATCACACCCTCCT < 41bp 0.564825924207425 0.787700601596269 0.22856408 0.4141658 prediction 0.445749354777688 Functional Gain - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16373132 chr1:16373135 nonsynonymous SNV 0.988 2 24 hm5C_associated_SNPs_118399 0 0 0 0 1 CLCNKB chr1:16373158 5'GT 16373158 Upstream 24bp
chr7 7628158 7628158 1 + A G LUSC 7628155 + 7628135 7628175 41 AACAAAGTTGCAGTACGTGACAGAGTGGCATTTGCTTGTAA AACAAAGTTGCAGTACGTGACAGGGTGGCATTTGCTTGTAA < 41bp 0.51586661805993 0.738733236455018 0.29123804 0.8560203 prediction 0.445733236790176 Functional Gain - MIOS ENSG00000164654 CDS Human protein_coding chr7:7628155 chr7:7628158 synonymous SNV . 0 24 hm5C_associated_SNPs_118402 0 0 1 0 2 MIOS chr7:7628129 3'AG 7628129 Downstream 30bp
chr7 7628158 7628158 1 + A G LUSC 7628155 + 7628135 7628175 41 AACAAAGTTGCAGTACGTGACAGAGTGGCATTTGCTTGTAA AACAAAGTTGCAGTACGTGACAGGGTGGCATTTGCTTGTAA < 41bp 0.51586661805993 0.738733236455018 0.29123804 0.8560203 prediction 0.445733236790176 Functional Gain - MIOS ENSG00000164654 CDS Human protein_coding chr7:7628155 chr7:7628158 synonymous SNV . 0 24 hm5C_associated_SNPs_118402 0 0 1 0 2 MIOS chr7:7628194 5'GT 7628194 Upstream 37bp
chr19 3586641 3586641 1 + C A UCEC 3586637 + 3586617 3586657 41 AGACAGAGGATGCTCTGGGGCTGACCATCACGGACAACGGG AGACAGAGGATGCTCTGGGGCTGAACATCACGGACAACGGG < 41bp 0.299086705618115 0.72286538058332 0.05442494 0.027848482 prediction 0.445730761166639 Functional Gain - GIPC3 ENSG00000179855 CDS Human protein_coding chr19:3586637 chr19:3586641 nonsynonymous SNV 0.984 2 25 hm5C_associated_SNPs_118403 0 0 0 0 1 GIPC3 chr19:3586678 5'GT 3586678 Upstream 38bp
chr2 89100645 89100645 1 + C A LUAD 89100641 + 89100621 89100661 41 GGATGATGCTCGCAACAAAGCTGACAATCAAGAAAAGGCAA GGATGATGCTCGCAACAAAGCTGAAAATCAAGAAAAGGCAA < 41bp 0.32786817290937 0.722852930846482 0.06359768 0.27312765 prediction 0.445705861692963 Functional Gain - ANKRD36BP2 ENSG00000230006 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:89100641 chr2:89100645 . . 0 25 hm5C_associated_SNPs_118406 0 0 0 1 1 ANKRD36BP2 chr2:89100616 3'AG 89100616 Downstream 30bp
chr16 89169163 89169163 1 + A G UCEC 89169160 + 89169140 89169180 41 GATGATGCCTGAGTTCAGCCCTCAGCAGGTGAGTTGGGGTC GATGATGCCTGAGTTCAGCCCTCGGCAGGTGAGTTGGGGTC < 41bp 0.565888328337975 0.788737430369731 0.17061248 0.23489562 prediction 0.445698204063513 Functional Gain - ACSF3 ENSG00000176715 CDS Human protein_coding chr16:89169160 chr16:89169163 nonsynonymous SNV 0.718 1 24 hm5C_associated_SNPs_118411 0 0 1 1 1 ACSF3 chr16:89169167 5'GT 89169167 Upstream 5bp
chr14 24877706 24877706 1 + C T OV 24877705 + 24877685 24877725 41 TGATCACAGCCCAGAGCACACCGCAGGAGGCAGCAAACCAG TGATCACAGCCCAGAGCACACTGCAGGAGGCAGCAAACCAG < 41bp 0.585809844865709 0.808658816984286 0.39445788 0.30197325 prediction 0.445697944237154 Functional Gain - NYNRIN ENSG00000205978 CDS Human protein_coding chr14:24877705 chr14:24877706 nonsynonymous SNV 0.036 0 22 hm5C_associated_SNPs_118412 0 0 0 0 1 NYNRIN chr14:24877733 5'GT 24877733 Upstream 28bp
chr12 49314862 49314862 1 + C A rs10875894 49314861 + 49314841 49314881 41 AGAGCTTACTGAGGAGCTCACCAAGGTAAAGCCCGGGGGAT AGAGCTTACTGAGGAGCTCACAAAGGTAAAGCCCGGGGGAT < 41bp 0.451124191335168 0.72284070881577 0.86677957 0.8461851 prediction 0.44568141763154 Functional Gain - CCDC65 ENSG00000139537 CDS Human protein_coding chr12:49314861 chr12:49314862 synonymous SNV . 0 22 hm5C_associated_SNPs_118416 1 0 0 0 1 CCDC65 chr12:49314865 5'GT 49314865 Upstream 4bp
chr3 161147187 161147187 1 + T C rs545119571 161147185 + 161147165 161147205 41 TAGTGGTCAAGCTTGTTTCTCCTGGGAGCGCTCTTCCGAGG TAGTGGTCAAGCTTGTTTCTCCCGGGAGCGCTCTTCCGAGG < 41bp 0.594518161300692 0.817354541308277 0.8334296 0.88071716 prediction 0.44567276001517 Functional Gain - LINC02067 ENSG00000234851;ENSG00000240567 ncRNA_exonic Human other chr3:161147185 chr3:161147187 . . 0 23 hm5C_associated_SNPs_118417 0 0 0 0 2 LINC02067 chr3:161147133 3'AG 161147133 Downstream 55bp
chr3 161147187 161147187 1 + T C rs545119571 161147185 + 161147165 161147205 41 TAGTGGTCAAGCTTGTTTCTCCTGGGAGCGCTCTTCCGAGG TAGTGGTCAAGCTTGTTTCTCCCGGGAGCGCTCTTCCGAGG < 41bp 0.594518161300692 0.817354541308277 0.8334296 0.88071716 prediction 0.44567276001517 Functional Gain - LINC02067 ENSG00000234851;ENSG00000240567 ncRNA_exonic Human other chr3:161147185 chr3:161147187 . . 0 23 hm5C_associated_SNPs_118417 0 0 0 0 2 LINC02067 chr3:161147251 5'GT 161147251 Upstream 65bp
chr12 53836516 53836516 1 + C T COAD 53836515 + 53836495 53836535 41 AAACATGTGGAATCCCAATGCCGGTAGGTGTTTGGGGGTTC AAACATGTGGAATCCCAATGCTGGTAGGTGTTTGGGGGTTC < 41bp 0.49574200076511 0.722832659242924 0.16126543 0.20137429 prediction 0.445665318485847 Functional Gain - PRR13 ENSG00000205352 CDS Human protein_coding chr12:53836515 chr12:53836516 synonymous SNV . 0 22 hm5C_associated_SNPs_118422 0 0 1 0 2 PRR13 chr12:53836479 3'AG 53836479 Downstream 38bp
chr12 53836516 53836516 1 + C T COAD 53836515 + 53836495 53836535 41 AAACATGTGGAATCCCAATGCCGGTAGGTGTTTGGGGGTTC AAACATGTGGAATCCCAATGCTGGTAGGTGTTTGGGGGTTC < 41bp 0.49574200076511 0.722832659242924 0.16126543 0.20137429 prediction 0.445665318485847 Functional Gain - PRR13 ENSG00000205352 CDS Human protein_coding chr12:53836515 chr12:53836516 synonymous SNV . 0 22 hm5C_associated_SNPs_118422 0 0 1 0 2 PRR13 chr12:53836517 5'GT 53836517 Upstream 2bp
chr20 30414654 30414654 1 + C T UCEC 30414653 + 30414633 30414673 41 GGATGAGGACTACCATCTGACCGAGGTGGACACCATGGTGT GGATGAGGACTACCATCTGACTGAGGTGGACACCATGGTGT < 41bp 0.473466841617005 0.722830636412679 0.3285978 0.14546081 prediction 0.445661272825357 Functional Gain - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30414653 chr20:30414654 synonymous SNV . 0 22 hm5C_associated_SNPs_118423 0 0 0 0 2 MYLK2 chr20:30414600 3'AG 30414600 Downstream 55bp
chr20 30414654 30414654 1 + C T UCEC 30414653 + 30414633 30414673 41 GGATGAGGACTACCATCTGACCGAGGTGGACACCATGGTGT GGATGAGGACTACCATCTGACTGAGGTGGACACCATGGTGT < 41bp 0.473466841617005 0.722830636412679 0.3285978 0.14546081 prediction 0.445661272825357 Functional Gain - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30414653 chr20:30414654 synonymous SNV . 0 22 hm5C_associated_SNPs_118423 0 0 0 0 2 MYLK2 chr20:30414741 5'GT 30414741 Upstream 88bp
chr16 28602110 28602110 1 + C T STAD 28602109 + 28602089 28602129 41 CCCAGGAGACACACCCTGAGCCGGCGCCGTGTCATCCCGCT CCCAGGAGACACACCCTGAGCTGGCGCCGTGTCATCCCGCT < 41bp 0.484582385345427 0.722819216890426 0.27209145 0.09500462 prediction 0.445638433780852 Functional Gain - SGF29 ENSG00000176476 CDS Human protein_coding chr16:28602109 chr16:28602110 nonsynonymous SNV 0.102 2 22 hm5C_associated_SNPs_118424 0 0 1 0 1 SGF29 chr16:28602094 3'AG 28602094 Downstream 17bp
chr12 48921769 48921769 1 + C A OV 48921765 + 48921745 48921785 41 CCAGGCCAGATGGAAGAGACCAGCCTTCACCGAAGGCCGCA CCAGGCCAGATGGAAGAGACCAGCATTCACCGAAGGCCGCA < 41bp 0.711551489527824 0.934368960181811 0.16295725 0.14690962 prediction 0.445634941307975 Functional Gain - OR8S1 ENSG00000197376 CDS Human protein_coding chr12:48921765 chr12:48921769 synonymous SNV . 0 25 hm5C_associated_SNPs_118425 0 0 0 0 1 OR8S1 chr12:48921695 3'AG 48921695 Downstream 75bp
chr20 34144773 34144773 1 + C T rs543824492 34144772 + 34144752 34144792 41 GACAAATCAGTTCTCTGTGACCAGACATGAGAAGGTTGCCA GACAAATCAGTTCTCTGTGACTAGACATGAGAAGGTTGCCA < 41bp 0.508948342993308 0.731746549834952 0.83836436 0.70899093 prediction 0.445596413683289 Functional Gain - ERGIC3 ENSG00000125991 CDS Human protein_coding chr20:34144772 chr20:34144773 synonymous SNV . 0 22 hm5C_associated_SNPs_118431 0 0 1 0 1 ERGIC3 chr20:34144744 3'AG 34144744 Downstream 30bp
chr7 158715138 158715138 1 + C T LUSC 158715137 + 158715117 158715157 41 GGTCTCCGTTCACGACTTACCCGAGAAGAGCTTTGTGCCCC GGTCTCCGTTCACGACTTACCTGAGAAGAGCTTTGTGCCCC < 41bp 0.561150436036977 0.783942781397825 0.68349636 0.328169 prediction 0.445584690721696 Functional Gain - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158715137 chr7:158715138 synonymous SNV . 0 22 hm5C_associated_SNPs_118432 0 0 1 0 1 WDR60 chr7:158715068 3'AG 158715068 Downstream 71bp
chr12 132396530 132396530 1 + C T PAAD 132396529 + 132396509 132396549 41 TGCAGAAGACCCTGGCCTCCCCGGCTGACACCGCTGGCTTC TGCAGAAGACCCTGGCCTCCCTGGCTGACACCGCTGGCTTC < 41bp 0.479873791203183 0.722789903970806 0.8952855 0.8186159 prediction 0.445579807941612 Functional Gain - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132396529 chr12:132396530 nonsynonymous SNV 0.063 3 22 hm5C_associated_SNPs_118433 0 0 1 0 1 ULK1 chr12:132396487 3'AG 132396487 Downstream 44bp
chr11 71498591 71498591 1 + C A rs12270466 71498590 + 71498570 71498610 41 CCCCGCCCCCGTCATGGCGCCCGAGGAGAACGCGGGGAGCG CCCCGCCCCCGTCATGGCGCCAGAGGAGAACGCGGGGAGCG < 41bp 0.465728568244586 0.722779410000762 0.39075866 0.84990174 prediction 0.445558820001524 Functional Gain - FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71498590 chr11:71498591 synonymous SNV . 0 22 hm5C_associated_SNPs_118435 0 0 1 0 1 FAM86C1 chr11:71498678 5'GT 71498678 Upstream 88bp
chr19 8429470 8429470 1 + C G LUAD 8429466 + 8429446 8429486 41 CAGGGAACCGAGGGGTCCACCGACCTCCCGTTAGCCCCTGA CAGGGAACCGAGGGGTCCACCGACGTCCCGTTAGCCCCTGA < 41bp 0.635035831444106 0.857804702024428 0.6719974 0.87553966 prediction 0.445537741160644 Functional Gain - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8429466 chr19:8429470 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_118437 0 0 0 0 1 ANGPTL4 chr19:8429523 5'GT 8429523 Upstream 54bp
chr1 40535396 40535396 1 + C A rs187715440 40535392 + 40535372 40535412 41 TGTATCTGATGACATGAAGACTCACAAGAACCCTGCCCTGA TGTATCTGATGACATGAAGACTCAAAAGAACCCTGCCCTGA < 41bp 0.299955260070667 0.722762368293446 0.045900464 0.13081807 prediction 0.445524736586892 Functional Gain - CAP1 ENSG00000131236 CDS Human protein_coding chr1:40535392 chr1:40535396 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_118439 0 0 1 0 1 CAP1 chr1:40535362 3'AG 40535362 Downstream 35bp
chr1 898587 898587 1 + C T SKCM 898586 + 898566 898606 41 TCCATGTCCACGCGCCGGGCCCGGGTGGGAGTGGCTGCGGT TCCATGTCCACGCGCCGGGCCTGGGTGGGAGTGGCTGCGGT < 41bp 0.557452864763925 0.780212910902657 0.42547244 0.38321856 prediction 0.445520092277464 Functional Gain - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:898586 chr1:898587 nonsynonymous SNV 0.841 4 22 hm5C_associated_SNPs_118441 0 0 1 0 2 KLHL17 chr1:898489 3'AG 898489 Downstream 99bp
chr1 898587 898587 1 + C T SKCM 898586 + 898566 898606 41 TCCATGTCCACGCGCCGGGCCCGGGTGGGAGTGGCTGCGGT TCCATGTCCACGCGCCGGGCCTGGGTGGGAGTGGCTGCGGT < 41bp 0.557452864763925 0.780212910902657 0.42547244 0.38321856 prediction 0.445520092277464 Functional Gain - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:898586 chr1:898587 nonsynonymous SNV 0.841 4 22 hm5C_associated_SNPs_118441 0 0 1 0 2 KLHL17 chr1:898633 5'GT 898633 Upstream 47bp
chr1 24859663 24859663 1 + C T SKCM 24859662 + 24859642 24859682 41 ATCTCCCCTCCAGCCTCTCCCCCGGTGGGGTGGAAGCAGAG ATCTCCCCTCCAGCCTCTCCCTCGGTGGGGTGGAAGCAGAG < 41bp 0.599486617343852 0.822243953353101 0.19261035 0.14505449 prediction 0.445514672018498 Functional Gain - RCAN3 ENSG00000117602 CDS Human protein_coding chr1:24859662 chr1:24859663 nonsynonymous SNV 0.020 5 22 hm5C_associated_SNPs_118442 0 0 1 0 3 RCAN3 chr1:24859573 3'AG 24859573 Downstream 91bp
chr1 24859663 24859663 1 + C T SKCM 24859662 + 24859642 24859682 41 ATCTCCCCTCCAGCCTCTCCCCCGGTGGGGTGGAAGCAGAG ATCTCCCCTCCAGCCTCTCCCTCGGTGGGGTGGAAGCAGAG < 41bp 0.599486617343852 0.822243953353101 0.19261035 0.14505449 prediction 0.445514672018498 Functional Gain - RCAN3 ENSG00000117602 CDS Human protein_coding chr1:24859662 chr1:24859663 nonsynonymous SNV 0.020 5 22 hm5C_associated_SNPs_118442 0 0 1 0 3 RCAN3 chr1:24859603 3'AG 24859603 Downstream 61bp
chr1 24859663 24859663 1 + C T SKCM 24859662 + 24859642 24859682 41 ATCTCCCCTCCAGCCTCTCCCCCGGTGGGGTGGAAGCAGAG ATCTCCCCTCCAGCCTCTCCCTCGGTGGGGTGGAAGCAGAG < 41bp 0.599486617343852 0.822243953353101 0.19261035 0.14505449 prediction 0.445514672018498 Functional Gain - RCAN3 ENSG00000117602 CDS Human protein_coding chr1:24859662 chr1:24859663 nonsynonymous SNV 0.020 5 22 hm5C_associated_SNPs_118442 0 0 1 0 3 RCAN3 chr1:24859744 5'GT 24859744 Upstream 82bp
chr10 114158684 114158684 1 + A G HNSC 114158681 + 114158661 114158701 41 AGGAGCACGGAAGGGGGTTTCCCAGAAGAACAATGACCTAA AGGAGCACGGAAGGGGGTTTCCCGGAAGAACAATGACCTAA < 41bp 0.520630396382154 0.743386836365071 0.29637522 0.42761 prediction 0.445512879965836 Functional Gain - ACSL5 ENSG00000197142 CDS Human protein_coding chr10:114158681 chr10:114158684 nonsynonymous SNV 0.900 1 24 hm5C_associated_SNPs_118443 0 0 1 0 2 ACSL5 chr10:114158659 3'AG 114158659 Downstream 26bp
chr10 114158684 114158684 1 + A G HNSC 114158681 + 114158661 114158701 41 AGGAGCACGGAAGGGGGTTTCCCAGAAGAACAATGACCTAA AGGAGCACGGAAGGGGGTTTCCCGGAAGAACAATGACCTAA < 41bp 0.520630396382154 0.743386836365071 0.29637522 0.42761 prediction 0.445512879965836 Functional Gain - ACSL5 ENSG00000197142 CDS Human protein_coding chr10:114158681 chr10:114158684 nonsynonymous SNV 0.900 1 24 hm5C_associated_SNPs_118443 0 0 1 0 2 ACSL5 chr10:114158767 5'GT 114158767 Upstream 84bp
chr1 182853769 182853769 1 + T C rs199552563 182853767 + 182853747 182853787 41 GGATTAAACTGCAAATATCTCATGAAGCTGCTGCCTGTATC GGATTAAACTGCAAATATCTCACGAAGCTGCTGCCTGTATC < 41bp 0.633409306746304 0.856164170658161 0.23747817 0.13949752 prediction 0.445509727823714 Functional Gain - DHX9 ENSG00000135829 CDS Human protein_coding chr1:182853767 chr1:182853769 synonymous SNV . 0 23 hm5C_associated_SNPs_118444 0 0 1 0 1 DHX9 chr1:182853748 3'AG 182853748 Downstream 22bp
chr16 31373942 31373942 1 + C T rs74413955 31373941 + 31373921 31373961 41 GGGCCCCTCAGGTTACTCCACCGAGCTGGCCCTCTGGAAAG GGGCCCCTCAGGTTACTCCACTGAGCTGGCCCTCTGGAAAG < 41bp 0.511717435479628 0.734469469912604 0.12331131 0.25804365 prediction 0.445504068865952 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31373941 chr16:31373942 synonymous SNV . 0 22 hm5C_associated_SNPs_118446 0 0 0 0 1 ITGAX chr16:31373932 3'AG 31373932 Downstream 11bp
chr8 39111990 39111990 1 + C A ESCA 39111986 + 39111966 39112006 41 CCAGGCTATAAGCCTCCAAACTGCCAAATACGTTCCAAAGG CCAGGCTATAAGCCTCCAAACTGCAAAATACGTTCCAAAGG < 41bp 0.294712055003381 0.722747469827644 0.089548886 0.13634104 prediction 0.445494939655288 Functional Gain - ADAM32 ENSG00000197140 CDS Human protein_coding chr8:39111986 chr8:39111990 nonsynonymous SNV 0.010 2 25 hm5C_associated_SNPs_118447 0 0 1 0 1 ADAM32 chr8:39111933 3'AG 39111933 Downstream 58bp
chr7 73106929 73106929 1 + C T STAD 73106928 + 73106908 73106948 41 TGTTCCTGTTTCTTTCAGGTCCGGGGATCCCGAGCTGTCCT TGTTCCTGTTTCTTTCAGGTCTGGGGATCCCGAGCTGTCCT < 41bp 0.537909878450561 0.760657086437555 0.85680807 0.43860948 prediction 0.445494415973989 Functional Gain - BUD23 ENSG00000071462 CDS Human protein_coding chr7:73106928 chr7:73106929 nonsynonymous SNV 0.172 4 22 hm5C_associated_SNPs_118449 0 0 1 0 2 BUD23 chr7:73106926 3'AG 73106926 Downstream 4bp
chr7 73106929 73106929 1 + C T STAD 73106928 + 73106908 73106948 41 TGTTCCTGTTTCTTTCAGGTCCGGGGATCCCGAGCTGTCCT TGTTCCTGTTTCTTTCAGGTCTGGGGATCCCGAGCTGTCCT < 41bp 0.537909878450561 0.760657086437555 0.85680807 0.43860948 prediction 0.445494415973989 Functional Gain - BUD23 ENSG00000071462 CDS Human protein_coding chr7:73106928 chr7:73106929 nonsynonymous SNV 0.172 4 22 hm5C_associated_SNPs_118449 0 0 1 0 2 BUD23 chr7:73106976 5'GT 73106976 Upstream 48bp
chr10 127520153 127520153 1 + T G KIRC 127520150 + 127520130 127520170 41 ATTAATGTCCCTCCACAGATCGCTCTGCCCATGTACCAGCA ATTAATGTCCCTCCACAGATCGCGCTGCCCATGTACCAGCA < 41bp 0.329599025676591 0.722746957716813 0.0326854 0.37401587 prediction 0.445493915433626 Functional Gain - BCCIP ENSG00000107949 CDS Human protein_coding chr10:127520150 chr10:127520153 synonymous SNV . 0 24 hm5C_associated_SNPs_118450 0 0 1 0 1 BCCIP chr10:127520176 5'GT 127520176 Upstream 24bp
chr11 551204 551204 1 + C G rs118033321 551203 + 551183 551223 41 TGCAGGTCCTGGACGAAGTGCCGGCCGCACACACAGGCCCA TGCAGGTCCTGGACGAAGTGCGGGCCGCACACACAGGCCCA < 41bp 0.399057642582886 0.722739732073259 0.54926187 0.81808907 prediction 0.445479464146518 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:551203 chr11:551204 nonsynonymous SNV 0.546 2 22 hm5C_associated_SNPs_118453 0 0 0 0 2 LRRC56 chr11:551131 3'AG 551131 Downstream 74bp
chr11 551204 551204 1 + C G rs118033321 551203 + 551183 551223 41 TGCAGGTCCTGGACGAAGTGCCGGCCGCACACACAGGCCCA TGCAGGTCCTGGACGAAGTGCGGGCCGCACACACAGGCCCA < 41bp 0.399057642582886 0.722739732073259 0.54926187 0.81808907 prediction 0.445479464146518 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:551203 chr11:551204 nonsynonymous SNV 0.546 2 22 hm5C_associated_SNPs_118453 0 0 0 0 2 LRRC56 chr11:551302 5'GT 551302 Upstream 99bp
chr19 12924157 12924157 1 + C T rs76634951 12924156 + 12924136 12924176 41 CCACAGGGAGGACTCAGCATCCGAGAATCAGGAGGGACTCA CCACAGGGAGGACTCAGCATCTGAGAATCAGGAGGGACTCA < 41bp 0.50595869629084 0.728672896122506 0.2773947 0.17927024 prediction 0.445428399663332 Functional Gain - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924156 chr19:12924157 synonymous SNV . 0 22 hm5C_associated_SNPs_118455 2 0 1 0 1 RNASEH2A chr19:12924142 3'AG 12924142 Downstream 16bp
chr2 171319906 171319906 1 + C T COAD 171319905 + 171319885 171319925 41 CTCTGGAGGTGATACGGCATCCGGAAGAAACCACCAACATG CTCTGGAGGTGATACGGCATCTGGAAGAAACCACCAACATG < 41bp 0.504920811005279 0.727626605090071 0.46783334 0.2511237 prediction 0.445411588169585 Functional Gain - MYO3B ENSG00000071909 CDS Human protein_coding chr2:171319905 chr2:171319906 nonsynonymous SNV 0.983 5 22 hm5C_associated_SNPs_118456 0 0 0 0 2 MYO3B chr2:171319878 3'AG 171319878 Downstream 29bp
chr2 171319906 171319906 1 + C T COAD 171319905 + 171319885 171319925 41 CTCTGGAGGTGATACGGCATCCGGAAGAAACCACCAACATG CTCTGGAGGTGATACGGCATCTGGAAGAAACCACCAACATG < 41bp 0.504920811005279 0.727626605090071 0.46783334 0.2511237 prediction 0.445411588169585 Functional Gain - MYO3B ENSG00000071909 CDS Human protein_coding chr2:171319905 chr2:171319906 nonsynonymous SNV 0.983 5 22 hm5C_associated_SNPs_118456 0 0 0 0 2 MYO3B chr2:171319955 5'GT 171319955 Upstream 50bp
chr22 47189693 47189693 1 + C T LGG 47189692 + 47189672 47189712 41 TCACCCCCCAGCGGCGACCTCCGGCTGGTGAAGTCGGTCAG TCACCCCCCAGCGGCGACCTCTGGCTGGTGAAGTCGGTCAG < 41bp 0.513067709050233 0.735770438709628 0.85487956 0.5214042 prediction 0.445405459318789 Functional Gain - TBC1D22A ENSG00000054611 CDS Human protein_coding chr22:47189692 chr22:47189693 nonsynonymous SNV 0.733 4 22 hm5C_associated_SNPs_118458 0 0 1 0 1 TBC1D22A chr22:47189738 5'GT 47189738 Upstream 46bp
chr1 155019788 155019788 1 + C A LUAD 155019784 + 155019764 155019804 41 ACAGTGATGGAATCAAACAACATGCGTGAGTGATGCTGAAA ACAGTGATGGAATCAAACAACATGAGTGAGTGATGCTGAAA < 41bp 0.313024824109879 0.722695934829249 0.14598194 0.11703095 prediction 0.445391869658498 Functional Gain - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155019784 chr1:155019788 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_118462 0 0 0 0 1 DCST1 chr1:155019788 5'GT 155019788 Upstream 1bp
chr8 39847274 39847274 1 + C T SKCM 39847273 + 39847253 39847293 41 CCACGAATGCTATCTTGCAGCCCAACCAGGAGGCCCTGCTC CCACGAATGCTATCTTGCAGCTCAACCAGGAGGCCCTGCTC < 41bp 0.463982832364837 0.722694999412153 0.05876088 0.08269036 prediction 0.445389998824306 Functional Gain - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39847273 chr8:39847274 nonsynonymous SNV 0.045 0 22 hm5C_associated_SNPs_118463 0 0 0 0 2 IDO2 chr8:39847240 3'AG 39847240 Downstream 35bp
chr8 39847274 39847274 1 + C T SKCM 39847273 + 39847253 39847293 41 CCACGAATGCTATCTTGCAGCCCAACCAGGAGGCCCTGCTC CCACGAATGCTATCTTGCAGCTCAACCAGGAGGCCCTGCTC < 41bp 0.463982832364837 0.722694999412153 0.05876088 0.08269036 prediction 0.445389998824306 Functional Gain - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39847273 chr8:39847274 nonsynonymous SNV 0.045 0 22 hm5C_associated_SNPs_118463 0 0 0 0 2 IDO2 chr8:39847357 5'GT 39847357 Upstream 84bp
chr13 22246272 22246272 1 + T C PRAD 22246270 + 22246250 22246290 41 TACTGCAGGACTGGATTTCACTTAGAAATCTTCCCCAATGG TACTGCAGGACTGGATTTCACTCAGAAATCTTCCCCAATGG < 41bp 0.454937174898264 0.722689562199083 0.19606712 0.10115597 prediction 0.445379124398165 Functional Gain - FGF9 ENSG00000102678 CDS Human protein_coding chr13:22246270 chr13:22246272 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_118465 0 0 0 0 1 FGF9 chr13:22246328 5'GT 22246328 Upstream 57bp
chr12 54943716 54943716 1 + C A UCEC 54943712 + 54943692 54943732 41 GGAGGAGTCGGATTGCCCGTCACCCCTGGAGCTGAAGTCAG GGAGGAGTCGGATTGCCCGTCACCACTGGAGCTGAAGTCAG < 41bp 0.33201203652536 0.72268365781772 0.15395963 0.15768296 prediction 0.44536731563544 Functional Gain - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54943712 chr12:54943716 synonymous SNV . 0 25 hm5C_associated_SNPs_118466 0 0 0 0 2 PDE1B chr12:54943644 3'AG 54943644 Downstream 73bp
chr12 54943716 54943716 1 + C A UCEC 54943712 + 54943692 54943732 41 GGAGGAGTCGGATTGCCCGTCACCCCTGGAGCTGAAGTCAG GGAGGAGTCGGATTGCCCGTCACCACTGGAGCTGAAGTCAG < 41bp 0.33201203652536 0.72268365781772 0.15395963 0.15768296 prediction 0.44536731563544 Functional Gain - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54943712 chr12:54943716 synonymous SNV . 0 25 hm5C_associated_SNPs_118466 0 0 0 0 2 PDE1B chr12:54943769 5'GT 54943769 Upstream 54bp
chr12 113704076 113704076 1 + T C LIHC 113704074 + 113704054 113704094 41 GCACACAATCACCTCTTCTACCTGATGGAGCTGGCCACGGC GCACACAATCACCTCTTCTACCCGATGGAGCTGGCCACGGC < 41bp 0.619893939103982 0.842560362964853 0.10087341 0.08966231 prediction 0.445332847721741 Functional Gain - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113704074 chr12:113704076 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_118470 0 0 1 0 2 TPCN1 chr12:113703985 3'AG 113703985 Downstream 92bp
chr12 113704076 113704076 1 + T C LIHC 113704074 + 113704054 113704094 41 GCACACAATCACCTCTTCTACCTGATGGAGCTGGCCACGGC GCACACAATCACCTCTTCTACCCGATGGAGCTGGCCACGGC < 41bp 0.619893939103982 0.842560362964853 0.10087341 0.08966231 prediction 0.445332847721741 Functional Gain - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113704074 chr12:113704076 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_118470 0 0 1 0 2 TPCN1 chr12:113704161 5'GT 113704161 Upstream 86bp
chrX 36007499 36007499 1 + C T SARC 36007498 + 36007478 36007518 41 GGCAGCAGGGCTTCAGTTCTCCAGAAGAAGGAGAATTTATT GGCAGCAGGGCTTCAGTTCTCTAGAAGAAGGAGAATTTATT < 41bp 0.482766224427154 0.722660153834776 0.8594886 0.44891584 prediction 0.445320307669552 Functional Gain - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:36007498 chrX:36007499 nonsynonymous SNV 0.434 3 22 hm5C_associated_SNPs_118474 0 0 0 2 1 CFAP47 chrX:36007436 3'AG 36007436 Downstream 64bp
chr5 137217708 137217708 1 + C A LUAD 137217707 + 137217687 137217727 41 GTGAATGATCAGGATGCAATCCAGGAGAAATTTTACCCACC GTGAATGATCAGGATGCAATCAAGGAGAAATTTTACCCACC < 41bp 0.588313226768361 0.810951545866216 0.91657275 0.93947303 prediction 0.445276638195709 Functional Gain - MYOT ENSG00000120729 CDS Human protein_coding chr5:137217707 chr5:137217708 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_118482 0 0 0 0 2 MYOT chr5:137217662 3'AG 137217662 Downstream 47bp
chr5 137217708 137217708 1 + C A LUAD 137217707 + 137217687 137217727 41 GTGAATGATCAGGATGCAATCCAGGAGAAATTTTACCCACC GTGAATGATCAGGATGCAATCAAGGAGAAATTTTACCCACC < 41bp 0.588313226768361 0.810951545866216 0.91657275 0.93947303 prediction 0.445276638195709 Functional Gain - MYOT ENSG00000120729 CDS Human protein_coding chr5:137217707 chr5:137217708 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_118482 0 0 0 0 2 MYOT chr5:137217794 5'GT 137217794 Upstream 87bp
chr2 238657878 238657878 1 + C A LUAD 238657874 + 238657854 238657894 41 ATGCCGGGCCTGTCTGCAGCCACGCTGGCCTCTCTGGGTGG ATGCCGGGCCTGTCTGCAGCCACGATGGCCTCTCTGGGTGG < 41bp 0.714945697956683 0.937578028976286 0.18661976 0.45575097 prediction 0.445264662039206 Functional Gain - LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238657874 chr2:238657878 nonsynonymous SNV 0.554 4 25 hm5C_associated_SNPs_118484 0 0 1 0 2 LRRFIP1 chr2:238657842 3'AG 238657842 Downstream 37bp
chr2 238657878 238657878 1 + C A LUAD 238657874 + 238657854 238657894 41 ATGCCGGGCCTGTCTGCAGCCACGCTGGCCTCTCTGGGTGG ATGCCGGGCCTGTCTGCAGCCACGATGGCCTCTCTGGGTGG < 41bp 0.714945697956683 0.937578028976286 0.18661976 0.45575097 prediction 0.445264662039206 Functional Gain - LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238657874 chr2:238657878 nonsynonymous SNV 0.554 4 25 hm5C_associated_SNPs_118484 0 0 1 0 2 LRRFIP1 chr2:238657967 5'GT 238657967 Upstream 90bp
chr6 43126654 43126654 1 + C T GBM 43126653 + 43126633 43126673 41 CGTAACTGCCTGGTCAGTGCCCAGAGACAAGTGAAGGTGTC CGTAACTGCCTGGTCAGTGCCTAGAGACAAGTGAAGGTGTC < 41bp 0.459084510965132 0.722622230148148 0.38512176 0.28182915 prediction 0.445244460296296 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43126653 chr6:43126654 stopgain 1.000 1 22 hm5C_associated_SNPs_118487 0 0 1 2 2 PTK7 chr6:43126555 3'AG 43126555 Downstream 100bp
chr6 43126654 43126654 1 + C T GBM 43126653 + 43126633 43126673 41 CGTAACTGCCTGGTCAGTGCCCAGAGACAAGTGAAGGTGTC CGTAACTGCCTGGTCAGTGCCTAGAGACAAGTGAAGGTGTC < 41bp 0.459084510965132 0.722622230148148 0.38512176 0.28182915 prediction 0.445244460296296 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43126653 chr6:43126654 stopgain 1.000 1 22 hm5C_associated_SNPs_118487 0 0 1 2 2 PTK7 chr6:43126706 5'GT 43126706 Upstream 53bp
chr7 100467998 100467998 1 + C T LUSC 100467997 + 100467977 100468017 41 ATTCCCACCTTCCAGGTGCCCCTGAGCCAGCCTCCAGAGGA ATTCCCACCTTCCAGGTGCCCTTGAGCCAGCCTCCAGAGGA < 41bp 0.471269820491509 0.722620915031896 0.11487281 0.106610954 prediction 0.445241830063792 Functional Gain - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100467997 chr7:100467998 synonymous SNV . 0 22 hm5C_associated_SNPs_118488 0 0 1 0 2 TRIP6 chr7:100467992 3'AG 100467992 Downstream 7bp
chr7 100467998 100467998 1 + C T LUSC 100467997 + 100467977 100468017 41 ATTCCCACCTTCCAGGTGCCCCTGAGCCAGCCTCCAGAGGA ATTCCCACCTTCCAGGTGCCCTTGAGCCAGCCTCCAGAGGA < 41bp 0.471269820491509 0.722620915031896 0.11487281 0.106610954 prediction 0.445241830063792 Functional Gain - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100467997 chr7:100467998 synonymous SNV . 0 22 hm5C_associated_SNPs_118488 0 0 1 0 2 TRIP6 chr7:100468085 5'GT 100468085 Upstream 88bp
chr16 30505565 30505565 1 + A G BLCA 30505562 + 30505542 30505582 41 TGACCTGGCTGCCCTCCCGGCAAAAGACTTCGTTGCTGGCC TGACCTGGCTGCCCTCCCGGCAAGAGACTTCGTTGCTGGCC < 41bp 0.466896544253456 0.72261934081145 0.77202547 0.91608477 prediction 0.4452386816229 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30505562 chr16:30505565 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_118490 0 0 0 0 1 ITGAL chr16:30505533 3'AG 30505533 Downstream 33bp
chr11 70208222 70208222 1 + C T SKCM 70208221 + 70208201 70208241 41 GCATGAATTGCTGGAGGAAGCCCGGAGACAAGGTTTACCTT GCATGAATTGCTGGAGGAAGCTCGGAGACAAGGTTTACCTT < 41bp 0.554714119460526 0.777331441631506 0.8690834 0.77894807 prediction 0.445234644341961 Functional Gain - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70208221 chr11:70208222 synonymous SNV . 0 22 hm5C_associated_SNPs_118491 0 0 1 0 1 PPFIA1 chr11:70208282 5'GT 70208282 Upstream 61bp
chr2 201499567 201499567 1 + C A UCEC 201499563 + 201499543 201499583 41 TTTTATATGGAAACCCAAAGCATGCTTGTCGTTCCCAAGGG TTTTATATGGAAACCCAAAGCATGATTGTCGTTCCCAAGGG < 41bp 0.311900995782653 0.722607765056487 0.05170679 0.08842811 prediction 0.445215530112974 Functional Gain - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201499563 chr2:201499567 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_118492 0 0 0 0 2 AOX1 chr2:201499514 3'AG 201499514 Downstream 54bp
chr2 201499567 201499567 1 + C A UCEC 201499563 + 201499543 201499583 41 TTTTATATGGAAACCCAAAGCATGCTTGTCGTTCCCAAGGG TTTTATATGGAAACCCAAAGCATGATTGTCGTTCCCAAGGG < 41bp 0.311900995782653 0.722607765056487 0.05170679 0.08842811 prediction 0.445215530112974 Functional Gain - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201499563 chr2:201499567 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_118492 0 0 0 0 2 AOX1 chr2:201499638 5'GT 201499638 Upstream 72bp
chr1 229431628 229431628 1 + C T UCEC 229431627 + 229431607 229431647 41 AAGTTATTACCGAGGCGCGGCCGGGGCTCTCCTCGTCTATG AAGTTATTACCGAGGCGCGGCTGGGGCTCTCCTCGTCTATG < 41bp 0.538275866268564 0.760882929230639 0.9177697 0.87195027 prediction 0.445214125924152 Functional Gain - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229431627 chr1:229431628 synonymous SNV . 0 22 hm5C_associated_SNPs_118493 0 0 1 2 2 RAB4A chr1:229431595 3'AG 229431595 Downstream 34bp
chr1 229431628 229431628 1 + C T UCEC 229431627 + 229431607 229431647 41 AAGTTATTACCGAGGCGCGGCCGGGGCTCTCCTCGTCTATG AAGTTATTACCGAGGCGCGGCTGGGGCTCTCCTCGTCTATG < 41bp 0.538275866268564 0.760882929230639 0.9177697 0.87195027 prediction 0.445214125924152 Functional Gain - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229431627 chr1:229431628 synonymous SNV . 0 22 hm5C_associated_SNPs_118493 0 0 1 2 2 RAB4A chr1:229431657 5'GT 229431657 Upstream 30bp
chr16 1837746 1837746 1 + C T SKCM 1837745 + 1837725 1837765 41 TACCTGGTGGTGGACACGCCCCCGGGGACCTCCGATGAGCA TACCTGGTGGTGGACACGCCCTCGGGGACCTCCGATGAGCA < 41bp 0.587474725821773 0.810074692409733 0.30655804 0.06959325 prediction 0.445199933175921 Functional Gain - NUBP2 ENSG00000095906 CDS Human protein_coding chr16:1837745 chr16:1837746 nonsynonymous SNV 0.088 4 22 hm5C_associated_SNPs_118495 0 0 1 0 2 NUBP2 chr16:1837678 3'AG 1837678 Downstream 69bp
chr16 1837746 1837746 1 + C T SKCM 1837745 + 1837725 1837765 41 TACCTGGTGGTGGACACGCCCCCGGGGACCTCCGATGAGCA TACCTGGTGGTGGACACGCCCTCGGGGACCTCCGATGAGCA < 41bp 0.587474725821773 0.810074692409733 0.30655804 0.06959325 prediction 0.445199933175921 Functional Gain - NUBP2 ENSG00000095906 CDS Human protein_coding chr16:1837745 chr16:1837746 nonsynonymous SNV 0.088 4 22 hm5C_associated_SNPs_118495 0 0 1 0 2 NUBP2 chr16:1837832 5'GT 1837832 Upstream 87bp
chr1 16375710 16375710 1 + C T STAD 16375709 + 16375689 16375729 41 ACCTGCGGGGCCTTCATGTTCCGGCTCCTGGCGGTCTTCAA ACCTGCGGGGCCTTCATGTTCTGGCTCCTGGCGGTCTTCAA < 41bp 0.544865713094511 0.767463635360035 0.25875944 0.21886799 prediction 0.445195844531047 Functional Gain - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16375709 chr1:16375710 nonsynonymous SNV 0.490 5 22 hm5C_associated_SNPs_118496 0 0 0 0 1 CLCNKB chr1:16375615 3'AG 16375615 Downstream 96bp
chr1 64936540 64936540 1 + A G LUSC 64936537 + 64936517 64936557 41 CCTGGGCGCCGGGGCCGAAGCCGACTTCTCCATCCTGGACG CCTGGGCGCCGGGGCCGAAGCCGGCTTCTCCATCCTGGACG < 41bp 0.572067215008448 0.794663597398112 0.10930008 0.84926313 prediction 0.445192764779327 Functional Gain - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:64936537 chr1:64936540 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_118497 0 0 1 0 1 CACHD1 chr1:64936625 5'GT 64936625 Upstream 86bp
chr1 192627481 192627481 1 + C A LUAD 192627480 + 192627460 192627500 41 TTTATAAGATTTACATCCAGCCACAGTCCCCTAGAGAGGTA TTTATAAGATTTACATCCAGCAACAGTCCCCTAGAGAGGTA < 41bp 0.57269137444052 0.795285522142915 0.19201216 0.22327968 prediction 0.44518829540479 Functional Gain - RGS13 ENSG00000127074 CDS Human protein_coding chr1:192627480 chr1:192627481 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_118498 0 0 0 0 1 RGS13 chr1:192627497 5'GT 192627497 Upstream 17bp
chr5 125816343 125816343 1 + A G SKCM 125816340 + 125816320 125816360 41 ATACAAGTGTTGGTAACAGTCCCAATCCATCTTCTGCTGAA ATACAAGTGTTGGTAACAGTCCCGATCCATCTTCTGCTGAA < 41bp 0.530032044670551 0.752618186534953 0.04412973 0.09675792 prediction 0.445172283728806 Functional Gain - GRAMD2B ENSG00000155324 CDS Human protein_coding chr5:125816340 chr5:125816343 nonsynonymous SNV 0.961 0 24 hm5C_associated_SNPs_118503 0 0 0 0 2 GRAMD2B chr5:125816319 3'AG 125816319 Downstream 25bp
chr5 125816343 125816343 1 + A G SKCM 125816340 + 125816320 125816360 41 ATACAAGTGTTGGTAACAGTCCCAATCCATCTTCTGCTGAA ATACAAGTGTTGGTAACAGTCCCGATCCATCTTCTGCTGAA < 41bp 0.530032044670551 0.752618186534953 0.04412973 0.09675792 prediction 0.445172283728806 Functional Gain - GRAMD2B ENSG00000155324 CDS Human protein_coding chr5:125816340 chr5:125816343 nonsynonymous SNV 0.961 0 24 hm5C_associated_SNPs_118503 0 0 0 0 2 GRAMD2B chr5:125816399 5'GT 125816399 Upstream 57bp
chr17 8218575 8218575 1 + C A UCEC 8218574 + 8218554 8218594 41 CTTCTGGATACCCTCAGCCCCCAGGAGAGGCGCATGCAGGA CTTCTGGATACCCTCAGCCCCAAGGAGAGGCGCATGCAGGA < 41bp 0.455876843447614 0.722584704433239 0.0818142 0.29144344 prediction 0.445169408866477 Functional Gain - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8218574 chr17:8218575 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_118504 0 0 0 0 1 ARHGEF15 chr17:8218595 5'GT 8218595 Upstream 21bp
chr14 24647316 24647316 1 + C A rs201938690 24647312 + 24647292 24647332 41 AACAGAGGAGGCCCCCAGTCCCCCCACCTCCTCGCCGCCGC AACAGAGGAGGCCCCCAGTCCCCCAACCTCCTCGCCGCCGC < 41bp 0.289111968517191 0.72257005090434 0.15937108 0.190635 prediction 0.44514010180868 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24647312 chr14:24647316 nonsynonymous SNV 0.072 0 25 hm5C_associated_SNPs_118514 0 0 0 0 1 REC8 chr14:24647297 3'AG 24647297 Downstream 20bp
chr22 44527492 44527492 1 + C T HNSC 44527491 + 44527471 44527511 41 CGGCCCCGAGGCTGGGCGCTCCGGTGGAGCGTGGACTGTGA CGGCCCCGAGGCTGGGCGCTCTGGTGGAGCGTGGACTGTGA < 41bp 0.582717347675245 0.805285995551905 0.7844278 0.80759627 prediction 0.445137295753319 Functional Gain - PARVB ENSG00000188677 CDS Human protein_coding chr22:44527491 chr22:44527492 nonsynonymous SNV 0.510 2 22 hm5C_associated_SNPs_118515 0 0 0 0 1 PARVB chr22:44527507 5'GT 44527507 Upstream 16bp
chr1 150234993 150234993 1 + C A BRCA 150234992 + 150234972 150235012 41 GCTGCTGAGAGGCCTCAGGGCCTGGCTGTCCTGGGCATCCT GCTGCTGAGAGGCCTCAGGGCATGGCTGTCCTGGGCATCCT < 41bp 0.455233741095111 0.722564511012891 0.26879656 0.41563252 prediction 0.445129022025782 Functional Gain - CA14 ENSG00000118298 CDS Human protein_coding chr1:150234992 chr1:150234993 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_118517 0 0 0 0 2 CA14 chr1:150234924 3'AG 150234924 Downstream 70bp
chr1 150234993 150234993 1 + C A BRCA 150234992 + 150234972 150235012 41 GCTGCTGAGAGGCCTCAGGGCCTGGCTGTCCTGGGCATCCT GCTGCTGAGAGGCCTCAGGGCATGGCTGTCCTGGGCATCCT < 41bp 0.455233741095111 0.722564511012891 0.26879656 0.41563252 prediction 0.445129022025782 Functional Gain - CA14 ENSG00000118298 CDS Human protein_coding chr1:150234992 chr1:150234993 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_118517 0 0 0 0 2 CA14 chr1:150235019 5'GT 150235019 Upstream 27bp
chr15 45249128 45249128 1 + C T UCEC 45249127 + 45249107 45249147 41 AACGATCAGTGACCCGCGAGCCGCCGACTTCTTGTTCAGCT AACGATCAGTGACCCGCGAGCTGCCGACTTCTTGTTCAGCT < 41bp 0.532420574464101 0.754981682281268 0.15188068 0.07160461 prediction 0.445122215634334 Functional Gain - TERB2 ENSG00000167014 CDS Human protein_coding chr15:45249127 chr15:45249128 synonymous SNV . 0 22 hm5C_associated_SNPs_118519 0 0 0 0 2 TERB2 chr15:45249094 3'AG 45249094 Downstream 35bp
chr15 45249128 45249128 1 + C T UCEC 45249127 + 45249107 45249147 41 AACGATCAGTGACCCGCGAGCCGCCGACTTCTTGTTCAGCT AACGATCAGTGACCCGCGAGCTGCCGACTTCTTGTTCAGCT < 41bp 0.532420574464101 0.754981682281268 0.15188068 0.07160461 prediction 0.445122215634334 Functional Gain - TERB2 ENSG00000167014 CDS Human protein_coding chr15:45249127 chr15:45249128 synonymous SNV . 0 22 hm5C_associated_SNPs_118519 0 0 0 0 2 TERB2 chr15:45249175 5'GT 45249175 Upstream 48bp
chr4 160277080 160277080 1 + C T SKCM 160277079 + 160277059 160277099 41 GAATTCCCATTACTGACTTTCCAGAAGGGCACTCCCATCCA GAATTCCCATTACTGACTTTCTAGAAGGGCACTCCCATCCA < 41bp 0.59918750123729 0.82174176448376 0.2663957 0.33442292 prediction 0.445108526492939 Functional Gain - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160277079 chr4:160277080 nonsynonymous SNV 0.128 0 22 hm5C_associated_SNPs_118521 0 0 0 0 1 RAPGEF2 chr4:160277005 3'AG 160277005 Downstream 76bp
chr6 35423604 35423604 1 + C T rs371485747 35423603 + 35423583 35423623 41 TGGCCGTTCGGCCATCGCTGCCGGAAAGTGGGCTCCTCTCT TGGCCGTTCGGCCATCGCTGCTGGAAAGTGGGCTCCTCTCT < 41bp 0.583886509213042 0.806436198128678 0.87966394 0.55345494 prediction 0.445099377831272 Functional Gain - FANCE ENSG00000112039 CDS Human protein_coding chr6:35423603 chr6:35423604 nonsynonymous SNV 0.030 5 22 hm5C_associated_SNPs_118524 0 0 0 0 1 FANCE chr6:35423524 3'AG 35423524 Downstream 81bp
chr1 2235378 2235378 1 + C G rs140889128 2235374 + 2235354 2235394 41 TGTGAGCAGCCCTCCGTGTGCCGCCGCCGTCTCCCGGGCCC TGTGAGCAGCCCTCCGTGTGCCGCGGCCGTCTCCCGGGCCC < 41bp 0.418850575421262 0.722548980588222 0.5164757 0.8319492 prediction 0.445097961176444 Functional Gain - SKI ENSG00000157933 CDS Human protein_coding chr1:2235374 chr1:2235378 synonymous SNV . 0 25 hm5C_associated_SNPs_118525 2 0 1 0 1 SKI chr1:2235279 3'AG 2235279 Downstream 100bp
chr1 15771143 15771143 1 + C T SKCM 15771142 + 15771122 15771162 41 AGCTGCAGCAGGGCCTGCAGCCCGTGGTGGATCACGCCACG AGCTGCAGCAGGGCCTGCAGCTCGTGGTGGATCACGCCACG < 41bp 0.574422854362877 0.796971228025343 0.188519 0.18955043 prediction 0.445096747324931 Functional Gain - CTRC ENSG00000162438 CDS Human protein_coding chr1:15771142 chr1:15771143 nonsynonymous SNV 0.094 2 22 hm5C_associated_SNPs_118526 0 0 0 0 1 CTRC chr1:15771101 3'AG 15771101 Downstream 43bp
chr11 9482560 9482560 1 + C A rs369691663 9482556 + 9482536 9482576 41 GGGTTGCGGGGCCTGGGGGCCGGACGGCTGTTTCCTGTCCT GGGTTGCGGGGCCTGGGGGCCGGAAGGCTGTTTCCTGTCCT < 41bp 0.685310127814632 0.907852711204815 0.89736634 0.89841163 prediction 0.445085166780365 Functional Gain - ZNF143 ENSG00000166478 UTR5 Human protein_coding chr11:9482556 chr11:9482560 . . 0 25 hm5C_associated_SNPs_118527 0 0 0 0 1 ZNF143 chr11:9482623 5'GT 9482623 Upstream 64bp
chr2 36668566 36668566 1 + C T STAD 36668565 + 36668545 36668585 41 GTCTGCGCAAAGTCTGCCAGCCGGGAAACCTGAACATACTA GTCTGCGCAAAGTCTGCCAGCTGGGAAACCTGAACATACTA < 41bp 0.47758613082859 0.722539891032986 0.8782594 0.2408883 prediction 0.445079782065972 Functional Gain - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36668565 chr2:36668566 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_118530 0 0 1 0 1 CRIM1 chr2:36668643 5'GT 36668643 Upstream 78bp
chr4 111441459 111441459 1 + T C COAD 111441457 + 111441437 111441477 41 AACGTGAACGGTGTCAAGAACATCACACAGAAACGCTTTTT AACGTGAACGGTGTCAAGAACACCACACAGAAACGCTTTTT < 41bp 0.433499652506773 0.722538317097028 0.0526101 0.048127234 prediction 0.445076634194055 Functional Gain - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111441457 chr4:111441459 nonsynonymous SNV 0.008 1 23 hm5C_associated_SNPs_118533 0 0 0 0 2 ENPEP chr4:111441371 3'AG 111441371 Downstream 89bp
chr4 111441459 111441459 1 + T C COAD 111441457 + 111441437 111441477 41 AACGTGAACGGTGTCAAGAACATCACACAGAAACGCTTTTT AACGTGAACGGTGTCAAGAACACCACACAGAAACGCTTTTT < 41bp 0.433499652506773 0.722538317097028 0.0526101 0.048127234 prediction 0.445076634194055 Functional Gain - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111441457 chr4:111441459 nonsynonymous SNV 0.008 1 23 hm5C_associated_SNPs_118533 0 0 0 0 2 ENPEP chr4:111441522 5'GT 111441522 Upstream 64bp
chr1 65157073 65157073 1 + C T rs544222989 65157072 + 65157052 65157092 41 CAACAATGACCCCTTGTCAGCCGGGGTCGATGTGGGAAACC CAACAATGACCCCTTGTCAGCTGGGGTCGATGTGGGAAACC < 41bp 0.532863925626309 0.75540216605927 0.9277272 0.80782604 prediction 0.445076480865923 Functional Gain - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65157072 chr1:65157073 synonymous SNV . 0 22 hm5C_associated_SNPs_118534 0 0 1 0 1 CACHD1 chr1:65157006 3'AG 65157006 Downstream 68bp
chr8 2048742 2048742 1 + C A STAD 2048741 + 2048721 2048761 41 GTGGAAGGCCCCTGTGTACTCCGGCAGCAGCCCTGTTTCTG GTGGAAGGCCCCTGTGTACTCAGGCAGCAGCCCTGTTTCTG < 41bp 0.449629311385409 0.722524352741172 0.82799786 0.8893866 prediction 0.445048705482345 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2048741 chr8:2048742 synonymous SNV . 0 22 hm5C_associated_SNPs_118540 0 0 0 0 1 MYOM2 chr8:2048666 3'AG 2048666 Downstream 77bp
chr12 12224543 12224543 1 + C G rs2287154 12224542 + 12224522 12224562 41 GTGGGAACTTGGGCACTCATCCGCAGGAGGTCTAGACCCCC GTGGGAACTTGGGCACTCATCGGCAGGAGGTCTAGACCCCC < 41bp 0.558913644768905 0.781431218739078 0.52732366 0.8881086 prediction 0.445035147940346 Functional Gain - BCL2L14 ENSG00000121380 UTR5 Human protein_coding chr12:12224542 chr12:12224543 . . 0 22 hm5C_associated_SNPs_118542 0 0 0 0 1 BCL2L14 chr12:12224589 5'GT 12224589 Upstream 47bp
chr11 66314511 66314511 1 + C A rs201200629 66314510 + 66314490 66314530 41 GAACAGGAGGAGGACTGGGACCGCGACCTGCTGCTGGACCC GAACAGGAGGAGGACTGGGACAGCGACCTGCTGCTGGACCC < 41bp 0.476455686005174 0.722517481127329 0.30954483 0.4429004 prediction 0.445034962254657 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66314510 chr11:66314511 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_118543 0 0 0 0 1 ACTN3 chr11:66314555 5'GT 66314555 Upstream 45bp
chrX 74494470 74494470 1 + T G rs4892396 74494468 + 74494448 74494488 41 GGGAGCTACAGACCATCATCCGTGACAAGTAAGCCAAGAGC GGGAGCTACAGACCATCATCCGGGACAAGTAAGCCAAGAGC < 41bp 0.674958891405118 0.897470661888899 0.31306374 0.8969585 prediction 0.445023540967561 Functional Gain - UPRT ENSG00000094841 CDS Human protein_coding chrX:74494468 chrX:74494470 synonymous SNV . 0 23 hm5C_associated_SNPs_118544 0 0 0 0 1 UPRT chrX:74494475 5'GT 74494475 Upstream 6bp
chr10 75535364 75535364 1 + T C LIHC 75535362 + 75535342 75535382 41 CAGGGGGAAGCTCTCACTGCCATGATCCACAACAATGAAAC CAGGGGGAAGCTCTCACTGCCACGATCCACAACAATGAAAC < 41bp 0.45883548382956 0.722510038559218 0.24678925 0.13667524 prediction 0.445020077118436 Functional Gain - FUT11 ENSG00000196968 CDS Human protein_coding chr10:75535362 chr10:75535364 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_118547 0 0 1 0 1 FUT11 chr10:75535299 3'AG 75535299 Downstream 66bp
chr11 126146410 126146410 1 + C A COAD 126146409 + 126146389 126146429 41 AACTACCTAGGTGGTCGTAGCCCCACTGAGGTAAGCTGAGT AACTACCTAGGTGGTCGTAGCACCACTGAGGTAAGCTGAGT < 41bp 0.465818299895212 0.722508729417155 0.21665761 0.25873643 prediction 0.44501745883431 Functional Gain - FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126146409 chr11:126146410 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_118548 0 0 1 0 1 FOXRED1 chr11:126146418 5'GT 126146418 Upstream 9bp
chr11 119003815 119003815 1 + A G rs568673466 119003812 + 119003792 119003832 41 CCTTCCCCATCAGGGAGACTCTGAGCCAAGGTACAAATGTC CCTTCCCCATCAGGGAGACTCTGGGCCAAGGTACAAATGTC < 41bp 0.562247267675083 0.784755987158309 0.41602984 0.73727804 prediction 0.445017438966451 Functional Gain - HINFP ENSG00000172273 CDS Human protein_coding chr11:119003812 chr11:119003815 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_118549 0 0 0 0 1 HINFP chr11:119003805 3'AG 119003805 Downstream 11bp
chr1 36788023 36788023 1 + C A rs200217271 36788022 + 36788002 36788042 41 ATCCGTTCGCGCTCCTCCAGCCGCTGCGCCCGCTCCAGCTC ATCCGTTCGCGCTCCTCCAGCAGCTGCGCCCGCTCCAGCTC < 41bp 0.469115325516969 0.72250354169754 0.258933 0.92201054 prediction 0.445007083395081 Functional Gain - EVA1B ENSG00000142694 CDS Human protein_coding chr1:36788022 chr1:36788023 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_118551 0 0 1 0 1 EVA1B chr1:36787968 3'AG 36787968 Downstream 56bp
chr12 53575775 53575775 1 + A G UCEC 53575772 + 53575752 53575792 41 TAAGTGAGAAATCAGCATGGCTCAGGTAAAAAGCTCTAGAG TAAGTGAGAAATCAGCATGGCTCGGGTAAAAAGCTCTAGAG < 41bp 0.508804552259082 0.731303118891476 0.44917777 0.5448299 prediction 0.444997133264788 Functional Gain - ZNF740 ENSG00000139651 CDS Human protein_coding chr12:53575772 chr12:53575775 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_118552 0 0 1 0 1 ZNF740 chr12:53575776 5'GT 53575776 Upstream 2bp
chr12 109961846 109961846 1 + A G COAD 109961843 + 109961823 109961863 41 GCCAACTGCTTGGGCACCACCACAGCGTCTTCTATAGCTCG GCCAACTGCTTGGGCACCACCACGGCGTCTTCTATAGCTCG < 41bp 0.483581791693465 0.722497659442275 0.28033626 0.44798177 prediction 0.444995318884551 Functional Gain - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109961843 chr12:109961846 nonsynonymous SNV 0.966 1 24 hm5C_associated_SNPs_118553 0 0 0 0 2 UBE3B chr12:109961783 3'AG 109961783 Downstream 64bp
chr12 109961846 109961846 1 + A G COAD 109961843 + 109961823 109961863 41 GCCAACTGCTTGGGCACCACCACAGCGTCTTCTATAGCTCG GCCAACTGCTTGGGCACCACCACGGCGTCTTCTATAGCTCG < 41bp 0.483581791693465 0.722497659442275 0.28033626 0.44798177 prediction 0.444995318884551 Functional Gain - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109961843 chr12:109961846 nonsynonymous SNV 0.966 1 24 hm5C_associated_SNPs_118553 0 0 0 0 2 UBE3B chr12:109961920 5'GT 109961920 Upstream 75bp
chr1 155247408 155247408 1 - G T rs184885598 155247412 - 155247392 155247432 41 AGGGGTCGCCCCTTCGCTGGCCCCCGCCGCCGGCCGCTGCT AGGGGTCGCCCCTTCGCTGGCCCCAGCCGCCGGCCGCTGCT < 41bp 0.349254509486464 0.722493782616258 0.07538739 0.15399697 prediction 0.444987565232517 Functional Gain - HCN3 ENSG00000143630 CDS Human protein_coding chr1:155247412 chr1:155247408 synonymous SNV . 0 25 hm5C_associated_SNPs_118556 0 0 0 0 1 HCN3 chr1:155247329 5'GT 155247329 Upstream 80bp
chrX 47034426 47034426 1 + C T SKCM 47034425 + 47034405 47034445 41 ATGCTGTCTCCAGGTCAGAGCCGGGGCTTCGCCTTCGTCGA ATGCTGTCTCCAGGTCAGAGCTGGGGCTTCGCCTTCGTCGA < 41bp 0.516216219593425 0.738708523017799 0.942828 0.7856802 prediction 0.444984606848748 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47034425 chrX:47034426 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_118557 0 0 1 0 2 RBM10 chrX:47034418 3'AG 47034418 Downstream 9bp
chrX 47034426 47034426 1 + C T SKCM 47034425 + 47034405 47034445 41 ATGCTGTCTCCAGGTCAGAGCCGGGGCTTCGCCTTCGTCGA ATGCTGTCTCCAGGTCAGAGCTGGGGCTTCGCCTTCGTCGA < 41bp 0.516216219593425 0.738708523017799 0.942828 0.7856802 prediction 0.444984606848748 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47034425 chrX:47034426 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_118557 0 0 1 0 2 RBM10 chrX:47034491 5'GT 47034491 Upstream 66bp
chr1 150956828 150956828 1 + C T SKCM 150956827 + 150956807 150956847 41 TGTGATGGCTCTGCTGCAGCCCACAGCCCAGTTTGACGCCC TGTGATGGCTCTGCTGCAGCCTACAGCCCAGTTTGACGCCC < 41bp 0.605408123417129 0.82789881683765 0.10654348 0.3044371 prediction 0.444981386841041 Functional Gain - ANXA9 ENSG00000143412 CDS Human protein_coding chr1:150956827 chr1:150956828 synonymous SNV . 0 22 hm5C_associated_SNPs_118558 0 0 0 0 2 ANXA9 chr1:150956757 3'AG 150956757 Downstream 72bp
chr1 150956828 150956828 1 + C T SKCM 150956827 + 150956807 150956847 41 TGTGATGGCTCTGCTGCAGCCCACAGCCCAGTTTGACGCCC TGTGATGGCTCTGCTGCAGCCTACAGCCCAGTTTGACGCCC < 41bp 0.605408123417129 0.82789881683765 0.10654348 0.3044371 prediction 0.444981386841041 Functional Gain - ANXA9 ENSG00000143412 CDS Human protein_coding chr1:150956827 chr1:150956828 synonymous SNV . 0 22 hm5C_associated_SNPs_118558 0 0 0 0 2 ANXA9 chr1:150956870 5'GT 150956870 Upstream 43bp
chr2 177016750 177016750 1 + C A LUSC 177016746 + 177016726 177016766 41 CCTCCGGGACGGCACTCAAGCAGCCGGCCGTGGTCTACCCC CCTCCGGGACGGCACTCAAGCAGCAGGCCGTGGTCTACCCC < 41bp 0.710011053272558 0.932500309256506 0.82099366 0.72852725 prediction 0.444978511967898 Functional Gain - HOXD4 ENSG00000170166 CDS Human protein_coding chr2:177016746 chr2:177016750 nonsynonymous SNV 0.637 4 25 hm5C_associated_SNPs_118560 0 0 1 0 1 HOXD4 chr2:177016794 5'GT 177016794 Upstream 45bp
chr10 133959058 133959058 1 + C T UCEC 133959057 + 133959037 133959077 41 GAAGAGAAGCAGGCACTGTACCGGAGAAATCAAGAGCTTGT GAAGAGAAGCAGGCACTGTACTGGAGAAATCAAGAGCTTGT < 41bp 0.563508883736684 0.785989919412916 0.8553852 0.25370806 prediction 0.444962071352464 Functional Gain - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133959057 chr10:133959058 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_118562 0 0 0 0 2 JAKMIP3 chr10:133959022 3'AG 133959022 Downstream 37bp
chr10 133959058 133959058 1 + C T UCEC 133959057 + 133959037 133959077 41 GAAGAGAAGCAGGCACTGTACCGGAGAAATCAAGAGCTTGT GAAGAGAAGCAGGCACTGTACTGGAGAAATCAAGAGCTTGT < 41bp 0.563508883736684 0.785989919412916 0.8553852 0.25370806 prediction 0.444962071352464 Functional Gain - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133959057 chr10:133959058 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_118562 0 0 0 0 2 JAKMIP3 chr10:133959084 5'GT 133959084 Upstream 27bp
chr1 23219493 23219493 1 + T A rs309472 23219489 + 23219469 23219509 41 GGTGCGGGCACGCACCGTGGCAGGTTACGGGCGCTACAGCG GGTGCGGGCACGCACCGTGGCAGGATACGGGCGCTACAGCG < 41bp 0.668342260043193 0.890823153811648 0.42548546 0.870945 prediction 0.444961787536912 Functional Gain - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23219489 chr1:23219493 synonymous SNV . 0 25 hm5C_associated_SNPs_118563 0 0 0 0 1 EPHB2 chr1:23219539 5'GT 23219539 Upstream 47bp
chr1 74957871 74957871 1 + A G ESCA 74957868 + 74957848 74957888 41 TGAACCGGGGAGGACCTGGCCGGAGTCATGTGGCAGCATTA TGAACCGGGGAGGACCTGGCCGGGGTCATGTGGCAGCATTA < 41bp 0.548883314730096 0.771363078940211 0.8666029 0.9146746 prediction 0.444959528420229 Functional Gain - FPGT-TNNI3K;TNNI3K ENSG00000116783;ENSG00000259030 CDS Human other chr1:74957868 chr1:74957871 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_118564 0 0 0 0 2 FPGT-TNNI3K;TNNI3K chr1:74957781 3'AG 74957781 Downstream 91bp
chr1 74957871 74957871 1 + A G ESCA 74957868 + 74957848 74957888 41 TGAACCGGGGAGGACCTGGCCGGAGTCATGTGGCAGCATTA TGAACCGGGGAGGACCTGGCCGGGGTCATGTGGCAGCATTA < 41bp 0.548883314730096 0.771363078940211 0.8666029 0.9146746 prediction 0.444959528420229 Functional Gain - FPGT-TNNI3K;TNNI3K ENSG00000116783;ENSG00000259030 CDS Human other chr1:74957868 chr1:74957871 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_118564 0 0 0 0 2 FPGT-TNNI3K;TNNI3K chr1:74957950 5'GT 74957950 Upstream 80bp
chr12 51213476 51213476 1 + C T UCEC 51213475 + 51213455 51213495 41 TATGTGAAATGCCTGGAAAACCGAGTTGCAGTCCTGGAAAA TATGTGAAATGCCTGGAAAACTGAGTTGCAGTCCTGGAAAA < 41bp 0.515173778811184 0.737652015089152 0.31864843 0.3007471 prediction 0.444956472555935 Functional Gain - ATF1 ENSG00000123268 CDS Human protein_coding chr12:51213475 chr12:51213476 stopgain 0.995 1 22 hm5C_associated_SNPs_118566 0 0 1 0 1 ATF1 chr12:51213418 3'AG 51213418 Downstream 59bp
chr2 44507965 44507965 1 + C T UCEC 44507964 + 44507944 44507984 41 AGATATGGTGTTGAAGATTTCCGGGAAGTTGATCCCATTTT AGATATGGTGTTGAAGATTTCTGGGAAGTTGATCCCATTTT < 41bp 0.491684283237859 0.722476336263542 0.853626 0.24624822 prediction 0.444952672527083 Functional Gain - SLC3A1 ENSG00000138079 CDS Human protein_coding chr2:44507964 chr2:44507965 nonsynonymous SNV 0.553 2 22 hm5C_associated_SNPs_118567 0 0 0 0 1 SLC3A1 chr2:44508034 5'GT 44508034 Upstream 70bp
chr4 55561755 55561755 1 + C T SKCM 55561754 + 55561734 55561774 41 GGAAAATCAGACTTAATAGTCCGCGTGGGCGACGAGATTAG GGAAAATCAGACTTAATAGTCTGCGTGGGCGACGAGATTAG < 41bp 0.473295398985083 0.722471213600078 0.21387371 0.22433501 prediction 0.444942427200157 Functional Gain - KIT ENSG00000157404 CDS Human protein_coding chr4:55561754 chr4:55561755 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_118569 0 0 0 0 1 KIT chr4:55561678 3'AG 55561678 Downstream 78bp
chr8 102570699 102570699 1 + C T BRCA 102570698 + 102570678 102570718 41 AATTTGAGTGGAGGAGAAAACCGAGTGCAAGTCCTAAAGAC AATTTGAGTGGAGGAGAAAACTGAGTGCAAGTCCTAAAGAC < 41bp 0.567130244307541 0.78960120172946 0.89169645 0.68983835 prediction 0.444941914843838 Functional Gain - GRHL2 ENSG00000083307 CDS Human protein_coding chr8:102570698 chr8:102570699 stopgain 0.984 1 22 hm5C_associated_SNPs_118570 0 0 0 0 1 GRHL2 chr8:102570647 3'AG 102570647 Downstream 53bp
chr16 1291652 1291652 1 + C A rs536368166 1291651 + 1291631 1291671 41 CCTGCCTCAGAGACCTTCCCCCCGGGGATGCCGTGCTGGGT CCTGCCTCAGAGACCTTCCCCACGGGGATGCCGTGCTGGGT < 41bp 0.611887818313532 0.834356490911471 0.19724828 0.8891728 prediction 0.444937345195878 Functional Gain - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291651 chr16:1291652 nonsynonymous SNV 0.065 1 22 hm5C_associated_SNPs_118572 0 0 0 0 1 TPSAB1 chr16:1291700 5'GT 1291700 Upstream 49bp
chr3 46620770 46620770 1 + T C UCEC 46620768 + 46620748 46620788 41 CCATCTCGGGGATACCTGGCCTTCAGAGATGACAGCATTTG CCATCTCGGGGATACCTGGCCTCCAGAGATGACAGCATTTG < 41bp 0.630459389326706 0.852924438406834 0.23061523 0.95198274 prediction 0.444930098160256 Functional Gain - TDGF1 ENSG00000241186 CDS Human protein_coding chr3:46620768 chr3:46620770 nonsynonymous SNV 0.004 1 23 hm5C_associated_SNPs_118575 0 0 0 0 2 TDGF1 chr3:46620722 3'AG 46620722 Downstream 49bp
chr3 46620770 46620770 1 + T C UCEC 46620768 + 46620748 46620788 41 CCATCTCGGGGATACCTGGCCTTCAGAGATGACAGCATTTG CCATCTCGGGGATACCTGGCCTCCAGAGATGACAGCATTTG < 41bp 0.630459389326706 0.852924438406834 0.23061523 0.95198274 prediction 0.444930098160256 Functional Gain - TDGF1 ENSG00000241186 CDS Human protein_coding chr3:46620768 chr3:46620770 nonsynonymous SNV 0.004 1 23 hm5C_associated_SNPs_118575 0 0 0 0 2 TDGF1 chr3:46620856 5'GT 46620856 Upstream 87bp
chr1 43783023 43783023 1 + C T SKCM 43783022 + 43783002 43783042 41 GGGAACTTCGGCCAGGTCATCCGGGCCATGATCAAGAAGGA GGGAACTTCGGCCAGGTCATCTGGGCCATGATCAAGAAGGA < 41bp 0.475326129315786 0.722462202918349 0.88954616 0.8658151 prediction 0.444924405836697 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43783022 chr1:43783023 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_118576 0 0 0 0 1 TIE1 chr1:43783080 5'GT 43783080 Upstream 58bp
chr2 173429750 173429750 1 + A G COAD 173429747 + 173429727 173429767 41 GCAAAGGAAGTCCATCTCATCGAAAACACATTGGAAGCATA GCAAAGGAAGTCCATCTCATCGAGAACACATTGGAAGCATA < 41bp 0.502594682332661 0.725055091008766 0.13905549 0.33425653 prediction 0.44492081735221 Functional Gain - PDK1 ENSG00000152256 CDS Human protein_coding chr2:173429747 chr2:173429750 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_118577 0 0 1 0 2 PDK1 chr2:173429706 3'AG 173429706 Downstream 45bp
chr2 173429750 173429750 1 + A G COAD 173429747 + 173429727 173429767 41 GCAAAGGAAGTCCATCTCATCGAAAACACATTGGAAGCATA GCAAAGGAAGTCCATCTCATCGAGAACACATTGGAAGCATA < 41bp 0.502594682332661 0.725055091008766 0.13905549 0.33425653 prediction 0.44492081735221 Functional Gain - PDK1 ENSG00000152256 CDS Human protein_coding chr2:173429747 chr2:173429750 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_118577 0 0 1 0 2 PDK1 chr2:173429801 5'GT 173429801 Upstream 52bp
chr22 37325823 37325823 1 + C T SKCM 37325822 + 37325802 37325842 41 GACGTCCCAGCAAGTGGAGCCCAGAGGTTTGCTGGGACTCC GACGTCCCAGCAAGTGGAGCCTAGAGGTTTGCTGGGACTCC < 41bp 0.567484549715292 0.78994180423914 0.8411525 0.43984 prediction 0.444914509047696 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37325822 chr22:37325823 nonsynonymous SNV 0.789 0 22 hm5C_associated_SNPs_118578 0 0 0 0 1 CSF2RB chr22:37325849 5'GT 37325849 Upstream 27bp
chr16 14755803 14755803 1 + A G UCEC 14755800 + 14755780 14755820 41 TATACGCCCTCAAGAGCTCCCCCAGGCTGAGTCTGCTCTAC TATACGCCCTCAAGAGCTCCCCCGGGCTGAGTCTGCTCTAC < 41bp 0.479534966077282 0.722454857981015 0.11079261 0.110637486 prediction 0.444909715962031 Functional Gain - BFAR ENSG00000103429 CDS Human protein_coding chr16:14755800 chr16:14755803 nonsynonymous SNV 0.180 4 24 hm5C_associated_SNPs_118579 0 0 1 0 1 BFAR chr16:14755749 3'AG 14755749 Downstream 55bp
chrX 68058546 68058546 1 + C A LUSC 68058542 + 68058522 68058562 41 GCCCCCGAGCAGAAGCAGGGCGGCCCTATGAGTACTACAAG GCCCCCGAGCAGAAGCAGGGCGGCACTATGAGTACTACAAG < 41bp 0.299059090857229 0.722451145855052 0.21949011 0.36687833 prediction 0.444902291710104 Functional Gain - EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68058542 chrX:68058546 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_118582 0 0 0 0 1 EFNB1 chrX:68058460 3'AG 68058460 Downstream 87bp
chr11 117052656 117052656 1 + C T rs145349618 117052655 + 117052635 117052675 41 GTCAACACCACATACCAGCTCCGGGTCAGCCGCATGGACGA GTCAACACCACATACCAGCTCTGGGTCAGCCGCATGGACGA < 41bp 0.571547536503582 0.793992342584198 0.36081186 0.23213837 prediction 0.444889612161231 Functional Gain - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117052655 chr11:117052656 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_118584 0 0 1 0 1 SIDT2 chr11:117052687 5'GT 117052687 Upstream 32bp
chr9 141016009 141016009 1 + C A BLCA 141016005 + 141015985 141016025 41 GTGGGCGGAGGCAGCTCCCCCAGACGCCCCTGACTCCCCGC GTGGGCGGAGGCAGCTCCCCCAGAAGCCCCTGACTCCCCGC < 41bp 0.347592951535831 0.722444599659983 0.8148559 0.8648547 prediction 0.444889199319965 Functional Gain - CACNA1B ENSG00000148408 CDS Human protein_coding chr9:141016005 chr9:141016009 nonsynonymous SNV 0.432 5 25 hm5C_associated_SNPs_118585 0 0 0 0 1 CACNA1B chr9:141015921 3'AG 141015921 Downstream 89bp
chr3 25833400 25833400 1 + C T UCEC 25833399 + 25833379 25833419 41 CATGCTGTTCAAAGAAGAGCCCGGATCTATGCAGAAGTTTT CATGCTGTTCAAAGAAGAGCCTGGATCTATGCAGAAGTTTT < 41bp 0.555206054153237 0.777646989598399 0.17887598 0.16410023 prediction 0.444881870890324 Functional Gain - OXSM ENSG00000151093 CDS Human protein_coding chr3:25833399 chr3:25833400 nonsynonymous SNV 0.272 3 22 hm5C_associated_SNPs_118587 0 0 1 0 1 OXSM chr3:25833488 5'GT 25833488 Upstream 89bp
chr2 79349161 79349161 1 + C T SKCM 79349160 + 79349140 79349180 41 CAACCTGGTGTCTGTGCTCACCCAGGCCGAGGGTGCCTTTG CAACCTGGTGTCTGTGCTCACTCAGGCCGAGGGTGCCTTTG < 41bp 0.479719677516375 0.722430980521174 0.27570784 0.14998019 prediction 0.444861961042347 Functional Gain - REG1A ENSG00000115386 CDS Human protein_coding chr2:79349160 chr2:79349161 synonymous SNV . 0 22 hm5C_associated_SNPs_118588 0 0 0 0 2 REG1A chr2:79349114 3'AG 79349114 Downstream 48bp
chr2 79349161 79349161 1 + C T SKCM 79349160 + 79349140 79349180 41 CAACCTGGTGTCTGTGCTCACCCAGGCCGAGGGTGCCTTTG CAACCTGGTGTCTGTGCTCACTCAGGCCGAGGGTGCCTTTG < 41bp 0.479719677516375 0.722430980521174 0.27570784 0.14998019 prediction 0.444861961042347 Functional Gain - REG1A ENSG00000115386 CDS Human protein_coding chr2:79349160 chr2:79349161 synonymous SNV . 0 22 hm5C_associated_SNPs_118588 0 0 0 0 2 REG1A chr2:79349251 5'GT 79349251 Upstream 91bp
chr15 51285806 51285806 1 + A G PCPG 51285803 + 51285783 51285823 41 ATTATTTGTTGGTCTAGGATCAGAAAGTACAATCAACCTGG ATTATTTGTTGGTCTAGGATCAGGAAGTACAATCAACCTGG < 41bp 0.551958528242835 0.774379746586168 0.22203007 0.69741875 prediction 0.444842436686666 Functional Gain - AP4E1 ENSG00000081014 CDS Human protein_coding chr15:51285803 chr15:51285806 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_118589 0 0 1 0 1 AP4E1 chr15:51285822 5'GT 51285822 Upstream 17bp
chr1 22973816 22973816 1 + C T PAAD 22973815 + 22973795 22973835 41 AAAATGGCCCCATGGGACCCCCTGGGATGCCAGGGGTGCCC AAAATGGCCCCATGGGACCCCTTGGGATGCCAGGGGTGCCC < 41bp 0.506684840036317 0.729101470981539 0.039349258 0.02222851 prediction 0.444833261890443 Functional Gain - C1QC ENSG00000159189 CDS Human protein_coding chr1:22973815 chr1:22973816 nonsynonymous SNV 0.030 1 22 hm5C_associated_SNPs_118593 0 0 0 0 1 C1QC chr1:22973720 3'AG 22973720 Downstream 97bp
chr1 206328752 206328752 1 + C T COAD 206328751 + 206328731 206328771 41 AGGCACTGTTATGTTCTGCTCCGAGGGCTGCCAGGCCATTG AGGCACTGTTATGTTCTGCTCTGAGGGCTGCCAGGCCATTG < 41bp 0.494636469989985 0.722413314148621 0.77182233 0.11400086 prediction 0.444826628297243 Functional Gain - CTSE ENSG00000196188 CDS Human protein_coding chr1:206328751 chr1:206328752 synonymous SNV . 0 22 hm5C_associated_SNPs_118594 0 0 0 0 1 CTSE chr1:206328719 3'AG 206328719 Downstream 34bp
chrX 135480102 135480102 1 + C T COAD 135480101 + 135480081 135480121 41 ATTAGCGCTTATAACATACACCGGATGTGGAATCTCCTCCA ATTAGCGCTTATAACATACACTGGATGTGGAATCTCCTCCA < 41bp 0.488569651003638 0.722411589977403 0.17311633 0.13689339 prediction 0.444823179954806 Functional Gain - ADGRG4 ENSG00000156920 CDS Human protein_coding chrX:135480101 chrX:135480102 synonymous SNV . 0 22 hm5C_associated_SNPs_118595 0 0 0 0 2 ADGRG4 chrX:135480040 3'AG 135480040 Downstream 63bp
chrX 135480102 135480102 1 + C T COAD 135480101 + 135480081 135480121 41 ATTAGCGCTTATAACATACACCGGATGTGGAATCTCCTCCA ATTAGCGCTTATAACATACACTGGATGTGGAATCTCCTCCA < 41bp 0.488569651003638 0.722411589977403 0.17311633 0.13689339 prediction 0.444823179954806 Functional Gain - ADGRG4 ENSG00000156920 CDS Human protein_coding chrX:135480101 chrX:135480102 synonymous SNV . 0 22 hm5C_associated_SNPs_118595 0 0 0 0 2 ADGRG4 chrX:135480161 5'GT 135480161 Upstream 60bp
chr16 30094725 30094725 1 + C T SKCM 30094724 + 30094704 30094744 41 GCCACCCCCAGGTTCGCTATCCTGATCGCATCACACTGATC GCCACCCCCAGGTTCGCTATCTTGATCGCATCACACTGATC < 41bp 0.594793995885493 0.817203440257262 0.7587606 0.40155828 prediction 0.444818888743539 Functional Gain - PPP4C ENSG00000149923 CDS Human protein_coding chr16:30094724 chr16:30094725 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_118596 0 0 1 1 1 PPP4C chr16:30094715 3'AG 30094715 Downstream 11bp
chr16 20788733 20788733 1 + A G LUSC 20788730 + 20788710 20788750 41 CAGGAACCACTCAGCTGACCCAGAAAGACATTCTCTACAGA CAGGAACCACTCAGCTGACCCAGGAAGACATTCTCTACAGA < 41bp 0.500846029739288 0.723253130292037 0.34225607 0.7887581 prediction 0.444814201105496 Functional Gain - ACSM3 ENSG00000005187 CDS Human protein_coding chr16:20788730 chr16:20788733 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_118597 0 0 1 0 1 ACSM3 chr16:20788695 3'AG 20788695 Downstream 39bp
chr19 42797159 42797159 1 + C G rs189391255 42797158 + 42797138 42797178 41 CCAAGGCCCAGCGGCCCAGCCCGAAGGCCCCCCAGAAAGTG CCAAGGCCCAGCGGCCCAGCCGGAAGGCCCCCCAGAAAGTG < 41bp 0.396648190400551 0.722403095050097 0.29141843 0.5090969 prediction 0.444806190100195 Functional Gain - CIC ENSG00000079432 CDS Human protein_coding chr19:42797158 chr19:42797159 nonsynonymous SNV 0.753 4 22 hm5C_associated_SNPs_118599 0 0 1 0 1 CIC chr19:42797108 3'AG 42797108 Downstream 52bp
chr9 135865147 135865147 1 + C T HNSC 135865146 + 135865126 135865166 41 CAGGAGCGCAGCTTCGAGTGCCGCATGTGCGGCAAGGCCTT CAGGAGCGCAGCTTCGAGTGCTGCATGTGCGGCAAGGCCTT < 41bp 0.578557458739609 0.800959109033921 0.28003386 0.22736132 prediction 0.444803300588625 Functional Gain - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135865146 chr9:135865147 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_118600 0 0 1 0 1 GFI1B chr9:135865129 3'AG 135865129 Downstream 19bp
chr13 51918452 51918452 1 + C T GBM 51918451 + 51918431 51918471 41 ACCCACCTCCAGCCAAGGCACCGAGATGGAGCTGGCCTGCA ACCCACCTCCAGCCAAGGCACTGAGATGGAGCTGGCCTGCA < 41bp 0.47928230445956 0.722401463396967 0.07907349 0.12617272 prediction 0.444802926793935 Functional Gain - SERPINE3 ENSG00000253309 CDS Human protein_coding chr13:51918451 chr13:51918452 synonymous SNV . 0 22 hm5C_associated_SNPs_118601 0 0 0 0 1 SERPINE3 chr13:51918388 3'AG 51918388 Downstream 65bp
chr9 15453116 15453116 1 + T C UCEC 15453114 + 15453094 15453134 41 GCTAGAATGGAAGATTTCACCTTCAATGACTTGTGTATTAA GCTAGAATGGAAGATTTCACCTCCAATGACTTGTGTATTAA < 41bp 0.651176941057431 0.873574541434036 0.35679165 0.96429014 prediction 0.44479520075321 Functional Gain - SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15453114 chr9:15453116 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_118602 0 0 1 6 1 SNAPC3 chr9:15453039 3'AG 15453039 Downstream 78bp
chr5 236660 236660 1 + C T LUSC 236659 + 236639 236679 41 GGGGCAAACTCGCTCTTGGACCTGGTTGTCTTTGGTCGGGC GGGGCAAACTCGCTCTTGGACTTGGTTGTCTTTGGTCGGGC < 41bp 0.466264613163715 0.722392508236944 0.17586029 0.15426871 prediction 0.444785016473887 Functional Gain - SDHA ENSG00000073578 CDS Human protein_coding chr5:236659 chr5:236660 synonymous SNV . 0 22 hm5C_associated_SNPs_118605 0 0 1 0 1 SDHA chr5:236714 5'GT 236714 Upstream 55bp
chr3 122821618 122821618 1 + A G UVM 122821615 + 122821595 122821635 41 CAGGGATGGTGCATTTCATACTGAATATAACCGAGCTGTGA CAGGGATGGTGCATTTCATACTGGATATAACCGAGCTGTGA < 41bp 0.529705021968198 0.752092705550639 0.20440012 0.2737248 prediction 0.444775367164882 Functional Gain - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122821615 chr3:122821618 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_118606 0 0 1 3 2 PDIA5 chr3:122821598 3'AG 122821598 Downstream 21bp
chr3 122821618 122821618 1 + A G UVM 122821615 + 122821595 122821635 41 CAGGGATGGTGCATTTCATACTGAATATAACCGAGCTGTGA CAGGGATGGTGCATTTCATACTGGATATAACCGAGCTGTGA < 41bp 0.529705021968198 0.752092705550639 0.20440012 0.2737248 prediction 0.444775367164882 Functional Gain - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122821615 chr3:122821618 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_118606 0 0 1 3 2 PDIA5 chr3:122821643 5'GT 122821643 Upstream 26bp
chr3 42569606 42569606 1 + C T UCEC 42569605 + 42569585 42569625 41 CGGGGAGTCGGACCAGTGCTCCGAGGGCTCGGTGAGGATCC CGGGGAGTCGGACCAGTGCTCTGAGGGCTCGGTGAGGATCC < 41bp 0.504986778236724 0.727356364723585 0.907948 0.4279434 prediction 0.444739172973723 Functional Gain - VIPR1 ENSG00000114812 CDS Human protein_coding chr3:42569605 chr3:42569606 synonymous SNV . 0 22 hm5C_associated_SNPs_118613 0 0 0 0 1 VIPR1 chr3:42569615 5'GT 42569615 Upstream 10bp
chr1 107691370 107691370 1 + C A LUAD 107691369 + 107691349 107691389 41 GGGATTACATGGCCTGCCAGCCGGAATCCACGGACATGACA GGGATTACATGGCCTGCCAGCAGGAATCCACGGACATGACA < 41bp 0.54887316691936 0.77124116002599 0.37606516 0.7656941 prediction 0.44473598621326 Functional Gain - NTNG1 ENSG00000162631 CDS Human protein_coding chr1:107691369 chr1:107691370 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_118615 0 0 0 0 1 NTNG1 chr1:107691461 5'GT 107691461 Upstream 92bp
chr8 22175704 22175704 1 + C T SKCM 22175703 + 22175683 22175723 41 CACCCTCACAAAATGGTATTCCCGGGTGGTGTTCCAGATGC CACCCTCACAAAATGGTATTCTCGGGTGGTGTTCCAGATGC < 41bp 0.605398618178477 0.827755916647411 0.45375493 0.37012547 prediction 0.444714596937868 Functional Gain - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22175703 chr8:22175704 synonymous SNV . 0 22 hm5C_associated_SNPs_118616 0 0 0 0 2 PIWIL2 chr8:22175683 3'AG 22175683 Downstream 22bp
chr8 22175704 22175704 1 + C T SKCM 22175703 + 22175683 22175723 41 CACCCTCACAAAATGGTATTCCCGGGTGGTGTTCCAGATGC CACCCTCACAAAATGGTATTCTCGGGTGGTGTTCCAGATGC < 41bp 0.605398618178477 0.827755916647411 0.45375493 0.37012547 prediction 0.444714596937868 Functional Gain - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22175703 chr8:22175704 synonymous SNV . 0 22 hm5C_associated_SNPs_118616 0 0 0 0 2 PIWIL2 chr8:22175788 5'GT 22175788 Upstream 85bp
chr1 177245552 177245552 1 + C A BRCA 177245548 + 177245528 177245568 41 CAGGACTCCTGGGCCACTCACAACCGGCAGTTTGAAGAGTC CAGGACTCCTGGGCCACTCACAACAGGCAGTTTGAAGAGTC < 41bp 0.291201532731859 0.722352076874583 0.41168118 0.5920135 prediction 0.444704153749167 Functional Gain - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177245548 chr1:177245552 synonymous SNV . 0 25 hm5C_associated_SNPs_118617 0 0 0 0 1 BRINP2 chr1:177245570 5'GT 177245570 Upstream 19bp
chr12 57920981 57920981 1 + C T rs374013830 57920980 + 57920960 57921000 41 TCTGCGCTGCTGGCTGCCACCCTGGATCCCCCCTCGGGGAC TCTGCGCTGCTGGCTGCCACCTTGGATCCCCCCTCGGGGAC < 41bp 0.46606751541649 0.722351674429244 0.14529198 0.11831629 prediction 0.444703348858488 Functional Gain - MBD6 ENSG00000166987 CDS Human protein_coding chr12:57920980 chr12:57920981 synonymous SNV . 0 22 hm5C_associated_SNPs_118618 0 0 1 0 1 MBD6 chr12:57921010 5'GT 57921010 Upstream 30bp
chr12 94654614 94654614 1 + C T STAD 94654613 + 94654593 94654633 41 GTCTGCCTTTCTGGATTTCTCCGGGTAAGTGTCACATCCCT GTCTGCCTTTCTGGATTTCTCTGGGTAAGTGTCACATCCCT < 41bp 0.535312783935563 0.757663323057701 0.94891214 0.9321339 prediction 0.444701078244275 Functional Gain - PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94654613 chr12:94654614 nonsynonymous SNV 0.519 4 22 hm5C_associated_SNPs_118619 0 0 1 0 1 PLXNC1 chr12:94654616 5'GT 94654616 Upstream 3bp
chr3 51708535 51708535 1 + C A OV 51708534 + 51708514 51708554 41 CTGAGAGCTGCAGCATCTCTCCCAAGCTCCGCTCCATCGCT CTGAGAGCTGCAGCATCTCTCACAAGCTCCGCTCCATCGCT < 41bp 0.582502841840794 0.804852782093699 0.35135162 0.56836706 prediction 0.44469988050581 Functional Gain - TEX264 ENSG00000164081 CDS Human protein_coding chr3:51708534 chr3:51708535 nonsynonymous SNV 0.981 4 22 hm5C_associated_SNPs_118620 0 0 1 0 1 TEX264 chr3:51708578 5'GT 51708578 Upstream 44bp
chr11 76833726 76833726 1 + C T PAAD 76833725 + 76833705 76833745 41 AATGTGAAAGGCATCTTCTACCGCAAGAAGCTGAGCCAGCC AATGTGAAAGGCATCTTCTACTGCAAGAAGCTGAGCCAGCC < 41bp 0.445451060724209 0.722337616447885 0.50506675 0.3182607 prediction 0.444675232895769 Functional Gain - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76833725 chr11:76833726 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_118627 0 0 0 0 1 CAPN5 chr11:76833758 5'GT 76833758 Upstream 33bp
chr19 54966555 54966555 1 + C T SKCM 54966554 + 54966534 54966574 41 CTCCCGCAGCGGGTCCTCTGCCCGGGGGAACCTGTCTGGGA CTCCCGCAGCGGGTCCTCTGCTCGGGGGAACCTGTCTGGGA < 41bp 0.584819563939411 0.807148021730168 0.8939363 0.33132565 prediction 0.444656915581514 Functional Gain - LENG8 ENSG00000167615 CDS Human protein_coding chr19:54966554 chr19:54966555 synonymous SNV . 0 22 hm5C_associated_SNPs_118630 0 0 1 0 1 LENG8 chr19:54966543 3'AG 54966543 Downstream 13bp
chr22 44332968 44332968 1 + C T LUAD 44332967 + 44332947 44332987 41 CCAGCCAGGCCTGAAGTCATCCTCAGAAGGGATGGATCCTG CCAGCCAGGCCTGAAGTCATCTTCAGAAGGGATGGATCCTG < 41bp 0.468240017734926 0.722321393082271 0.10112065 0.757998 prediction 0.444642786164543 Functional Gain - PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44332967 chr22:44332968 synonymous SNV . 0 22 hm5C_associated_SNPs_118632 0 0 1 0 1 PNPLA3 chr22:44332931 3'AG 44332931 Downstream 38bp
chr2 219232510 219232510 1 + C T SKCM 219232509 + 219232489 219232529 41 CGAAGCCCACGCGCTCATCTCCGACTTCCTGCTCTTCCTGC CGAAGCCCACGCGCTCATCTCTGACTTCCTGCTCTTCCTGC < 41bp 0.505796358889395 0.72811357179458 0.83804303 0.21505216 prediction 0.44463442581037 Functional Gain - CATIP ENSG00000158428 CDS Human protein_coding chr2:219232509 chr2:219232510 synonymous SNV . 0 22 hm5C_associated_SNPs_118634 0 0 0 1 1 CATIP chr2:219232445 3'AG 219232445 Downstream 66bp
chr20 36952337 36952337 1 + C T HNSC 36952336 + 36952316 36952356 41 TCCACCAGTGATGGAGTTTCCCGCTGCCCATGACCGCATGG TCCACCAGTGATGGAGTTTCCTGCTGCCCATGACCGCATGG < 41bp 0.482485789950244 0.722313694423482 0.034274578 0.06005287 prediction 0.444627388846965 Functional Gain - BPI ENSG00000101425 CDS Human protein_coding chr20:36952336 chr20:36952337 synonymous SNV . 0 22 hm5C_associated_SNPs_118635 0 0 0 0 1 BPI chr20:36952272 3'AG 36952272 Downstream 66bp
chr20 62871224 62871224 1 + C A BRCA 62871223 + 62871203 62871243 41 GGCCTGAGCCAGGCCCTCATCCAAAGTCTCGCCAATATCCG GGCCTGAGCCAGGCCCTCATCAAAAGTCTCGCCAATATCCG < 41bp 0.457367972036343 0.722309899213165 0.81085277 0.7725396 prediction 0.444619798426329 Functional Gain - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62871223 chr20:62871224 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_118637 0 0 0 0 1 MYT1 chr20:62871256 5'GT 62871256 Upstream 33bp
chr1 11589935 11589935 1 + C T SKCM 11589934 + 11589914 11589954 41 GGTGCGGCCACTAGTGGATACCGGGGCCATGGTCTTTGTGG GGTGCGGCCACTAGTGGATACTGGGGCCATGGTCTTTGTGG < 41bp 0.547263944139287 0.769568283384094 0.9296371 0.90261936 prediction 0.444608678489614 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11589934 chr1:11589935 synonymous SNV . 0 22 hm5C_associated_SNPs_118641 0 0 0 0 2 DISP3 chr1:11589844 3'AG 11589844 Downstream 92bp
chr1 11589935 11589935 1 + C T SKCM 11589934 + 11589914 11589954 41 GGTGCGGCCACTAGTGGATACCGGGGCCATGGTCTTTGTGG GGTGCGGCCACTAGTGGATACTGGGGCCATGGTCTTTGTGG < 41bp 0.547263944139287 0.769568283384094 0.9296371 0.90261936 prediction 0.444608678489614 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11589934 chr1:11589935 synonymous SNV . 0 22 hm5C_associated_SNPs_118641 0 0 0 0 2 DISP3 chr1:11590016 5'GT 11590016 Upstream 82bp
chr2 95542327 95542327 1 + T C rs150656282 95542325 + 95542305 95542345 41 AGTGAGGTGGAGGAGCTGAACATGTCCCTCACAGCACTGCG AGTGAGGTGGAGGAGCTGAACACGTCCCTCACAGCACTGCG < 41bp 0.489165074611348 0.722303005676771 0.085998416 0.0964067 prediction 0.444606011353541 Functional Gain - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95542325 chr2:95542327 nonsynonymous SNV 0.053 0 23 hm5C_associated_SNPs_118643 0 0 0 1 1 TEKT4 chr2:95542298 3'AG 95542298 Downstream 30bp
chrX 1471355 1471355 1 + T C UCEC 1471353 + 1471333 1471373 41 GTGCGGGGCAGGAGCGCAGCCTTCGGTATCCCCTGCACAGA GTGCGGGGCAGGAGCGCAGCCTCCGGTATCCCCTGCACAGA < 41bp 0.621843845650273 0.844140580621348 0.11792913 0.15720677 prediction 0.44459346994215 Functional Gain - IL3RA ENSG00000185291 CDS Human protein_coding chrX:1471353 chrX:1471355 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_118647 0 0 0 0 1 IL3RA chrX:1471399 5'GT 1471399 Upstream 45bp
chr1 212988383 212988383 1 + T G rs116192831 212988380 + 212988360 212988400 41 GAATGAGCCCTGGAACATTTCTATTTCAGCAGAATATATTG GAATGAGCCCTGGAACATTTCTAGTTCAGCAGAATATATTG < 41bp 0.341488803166959 0.722290248737182 0.18719158 0.2983142 prediction 0.444580497474363 Functional Gain - TATDN3 ENSG00000203705 CDS Human protein_coding chr1:212988380 chr1:212988383 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_118648 0 0 1 0 1 TATDN3 chr1:212988355 3'AG 212988355 Downstream 29bp
chr11 85975253 85975253 1 + T C SKCM 85975250 + 85975230 85975270 41 ATGGAATATCCAGACGGACACTCTGGTGGCAATATTTGGAG ATGGAATATCCAGACGGACACTCCGGTGGCAATATTTGGAG < 41bp 0.5423718847828 0.764660381861222 0.12840009 0.17171457 prediction 0.444576994156844 Functional Gain - EED ENSG00000074266 CDS Human protein_coding chr11:85975250 chr11:85975253 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_118650 0 0 1 2 2 EED chr11:85975214 3'AG 85975214 Downstream 40bp
chr11 85975253 85975253 1 + T C SKCM 85975250 + 85975230 85975270 41 ATGGAATATCCAGACGGACACTCTGGTGGCAATATTTGGAG ATGGAATATCCAGACGGACACTCCGGTGGCAATATTTGGAG < 41bp 0.5423718847828 0.764660381861222 0.12840009 0.17171457 prediction 0.444576994156844 Functional Gain - EED ENSG00000074266 CDS Human protein_coding chr11:85975250 chr11:85975253 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_118650 0 0 1 2 2 EED chr11:85975305 5'GT 85975305 Upstream 53bp
chr11 1475777 1475777 1 + T C HNSC 1475775 + 1475755 1475795 41 GAGAAGGAGGAGCAGATCTTCGTGGTCATCAAAGACAAACC GAGAAGGAGGAGCAGATCTTCGCGGTCATCAAAGACAAACC < 41bp 0.457070189228109 0.722282175569466 0.29205403 0.30204782 prediction 0.444564351138932 Functional Gain - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1475775 chr11:1475777 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_118651 0 0 0 0 2 BRSK2 chr11:1475715 3'AG 1475715 Downstream 63bp
chr11 1475777 1475777 1 + T C HNSC 1475775 + 1475755 1475795 41 GAGAAGGAGGAGCAGATCTTCGTGGTCATCAAAGACAAACC GAGAAGGAGGAGCAGATCTTCGCGGTCATCAAAGACAAACC < 41bp 0.457070189228109 0.722282175569466 0.29205403 0.30204782 prediction 0.444564351138932 Functional Gain - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1475775 chr11:1475777 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_118651 0 0 0 0 2 BRSK2 chr11:1475838 5'GT 1475838 Upstream 62bp
chr18 8376103 8376103 1 + T C UCEC 8376101 + 8376081 8376121 41 ACTTCACTGGCTGGCCGGATCATGGGGTCCCCTACCATGCC ACTTCACTGGCTGGCCGGATCACGGGGTCCCCTACCATGCC < 41bp 0.531720543304294 0.7539849306683 0.9177079 0.9271678 prediction 0.444528774728012 Functional Gain - PTPRM ENSG00000173482 CDS Human protein_coding chr18:8376101 chr18:8376103 synonymous SNV . 0 23 hm5C_associated_SNPs_118657 0 0 1 0 2 PTPRM chr18:8376044 3'AG 8376044 Downstream 60bp
chr18 8376103 8376103 1 + T C UCEC 8376101 + 8376081 8376121 41 ACTTCACTGGCTGGCCGGATCATGGGGTCCCCTACCATGCC ACTTCACTGGCTGGCCGGATCACGGGGTCCCCTACCATGCC < 41bp 0.531720543304294 0.7539849306683 0.9177079 0.9271678 prediction 0.444528774728012 Functional Gain - PTPRM ENSG00000173482 CDS Human protein_coding chr18:8376101 chr18:8376103 synonymous SNV . 0 23 hm5C_associated_SNPs_118657 0 0 1 0 2 PTPRM chr18:8376198 5'GT 8376198 Upstream 96bp
chr17 62518876 62518876 1 + C T COAD 62518875 + 62518855 62518895 41 AGGAAGCTAGGGGAGCCTATCCGAGCAGCTATTCCTTTACA AGGAAGCTAGGGGAGCCTATCTGAGCAGCTATTCCTTTACA < 41bp 0.554852011510805 0.777107595491791 0.93064725 0.7333015 prediction 0.444511167961973 Functional Gain - CEP95 ENSG00000258890 CDS Human protein_coding chr17:62518875 chr17:62518876 stopgain 0.927 0 22 hm5C_associated_SNPs_118660 0 0 1 2 1 CEP95 chr17:62518820 3'AG 62518820 Downstream 57bp
chr6 88187198 88187198 1 + C A STAD 88187194 + 88187174 88187214 41 AGACAAAGAACTCTACTTTTCAACCACAGCCGTGTGTATCA AGACAAAGAACTCTACTTTTCAACAACAGCCGTGTGTATCA < 41bp 0.304802173099352 0.722255101504323 0.030413806 0.057042688 prediction 0.444510203008646 Functional Gain - SLC35A1 ENSG00000164414 CDS Human protein_coding chr6:88187194 chr6:88187198 synonymous SNV . 0 25 hm5C_associated_SNPs_118662 0 0 0 0 1 SLC35A1 chr6:88187257 5'GT 88187257 Upstream 60bp
chr22 38211697 38211697 1 + T C LUAD 38211695 + 38211675 38211715 41 TACACGACAGGGCCTGGGCCCCTGGTGTCCCTGCTGCGGCA TACACGACAGGGCCTGGGCCCCCGGTGTCCCTGCTGCGGCA < 41bp 0.45957042148089 0.722251106726672 0.8837839 0.91258603 prediction 0.444502213453343 Functional Gain - GCAT ENSG00000100116 CDS Human protein_coding chr22:38211695 chr22:38211697 nonsynonymous SNV 0.946 5 23 hm5C_associated_SNPs_118665 0 0 0 0 1 GCAT chr22:38211670 3'AG 38211670 Downstream 28bp
chr10 37430707 37430707 1 + A G rs200560040 37430704 + 37430684 37430724 41 TTGGCGGAAAGAACACCTGACACAGCTGAAAGCTTGGTGGA TTGGCGGAAAGAACACCTGACACGGCTGAAAGCTTGGTGGA < 41bp 0.509638439937925 0.731884353559511 0.24027154 0.29313242 prediction 0.444491827243171 Functional Gain - ANKRD30A ENSG00000148513 CDS Human protein_coding chr10:37430704 chr10:37430707 synonymous SNV . 0 24 hm5C_associated_SNPs_118667 0 0 0 0 1 ANKRD30A chr10:37430646 3'AG 37430646 Downstream 62bp
chr17 7318115 7318115 1 + C T COAD 7318114 + 7318094 7318134 41 GCGTATCACCATCTTTGGTTCCGGGGCAGGGGCCTCCTGCG GCGTATCACCATCTTTGGTTCTGGGGCAGGGGCCTCCTGCG < 41bp 0.554013360938049 0.776254749943508 0.9024625 0.5875991 prediction 0.444482778010918 Functional Gain - NLGN2 ENSG00000169992 CDS Human protein_coding chr17:7318114 chr17:7318115 synonymous SNV . 0 22 hm5C_associated_SNPs_118669 0 0 1 0 1 NLGN2 chr17:7318167 5'GT 7318167 Upstream 53bp
chrX 47061895 47061895 1 + C T UCEC 47061894 + 47061874 47061914 41 CATGGCCGGCCACCTCGGCCCCGCAATGAGGTGGGTGAGTG CATGGCCGGCCACCTCGGCCCTGCAATGAGGTGGGTGAGTG < 41bp 0.598243139114407 0.82047861741678 0.1650435 0.751418 prediction 0.444470956604745 Functional Gain - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47061894 chrX:47061895 nonsynonymous SNV 0.983 1 22 hm5C_associated_SNPs_118670 0 0 1 0 1 UBA1 chrX:47061903 5'GT 47061903 Upstream 9bp
chr3 113342473 113342473 1 + C T rs145525164 113342472 + 113342452 113342492 41 CTGCTTCTCCTCCCACAGCTCCGCAGCTCTGAAAAGGTCCT CTGCTTCTCCTCCCACAGCTCTGCAGCTCTGAAAAGGTCCT < 41bp 0.469612865404633 0.722226995315419 0.09899184 0.15926778 prediction 0.444453990630838 Functional Gain - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113342472 chr3:113342473 nonsynonymous SNV 0.920 1 22 hm5C_associated_SNPs_118672 0 0 0 0 1 SIDT1 chr3:113342470 3'AG 113342470 Downstream 4bp
chr12 130827601 130827601 1 + C T COAD 130827600 + 130827580 130827620 41 GCAGAGGGGGAATTATTTGGCCGTGGACGGCAGAGAGGAAC GCAGAGGGGGAATTATTTGGCTGTGGACGGCAGAGAGGAAC < 41bp 0.541172486140784 0.763376247106204 0.27325714 0.10166764 prediction 0.44440752193084 Functional Gain - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130827600 chr12:130827601 nonsynonymous SNV 0.936 0 22 hm5C_associated_SNPs_118682 0 0 0 0 1 PIWIL1 chr12:130827646 5'GT 130827646 Upstream 46bp
chr20 1896060 1896060 1 + T C rs114499682 1896058 + 1896038 1896078 41 CGGAAAGGGAGCCCCGATGACGTGGAGTTTAAGTCTGGAGC CGGAAAGGGAGCCCCGATGACGCGGAGTTTAAGTCTGGAGC < 41bp 0.609046993460539 0.831244979549735 0.6525464 0.8266181 prediction 0.444395972178393 Functional Gain - SIRPA ENSG00000198053 CDS Human protein_coding chr20:1896058 chr20:1896060 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_118684 0 0 0 0 1 SIRPA chr20:1896101 5'GT 1896101 Upstream 42bp
chr12 52308318 52308318 1 + C A LUAD 52308317 + 52308297 52308337 41 AGGGATGAACAGTCCTGGTTCCGGGAGACTGAGATCTATAA AGGGATGAACAGTCCTGGTTCAGGGAGACTGAGATCTATAA < 41bp 0.455799337087407 0.722195085073275 0.8813363 0.82834285 prediction 0.444390170146549 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52308317 chr12:52308318 synonymous SNV . 0 22 hm5C_associated_SNPs_118686 0 0 0 0 1 ACVRL1 chr12:52308223 3'AG 52308223 Downstream 96bp
chr12 10339130 10339130 1 + C A LUAD 10339126 + 10339106 10339146 41 TGGGGAAGATGGGGGCCCACCACCCTGTGAAGTGACCGTCA TGGGGAAGATGGGGGCCCACCACCATGTGAAGTGACCGTCA < 41bp 0.723010259674809 0.945202902541218 0.08209926 0.13422596 prediction 0.444385285732817 Functional Gain - TMEM52B ENSG00000165685 CDS Human protein_coding chr12:10339126 chr12:10339130 synonymous SNV . 0 25 hm5C_associated_SNPs_118687 0 0 0 0 1 TMEM52B chr12:10339188 5'GT 10339188 Upstream 59bp
chr19 860929 860929 1 + T G KIRP 860927 + 860907 860947 41 CAGCCGGAGCCCTCCAAGCGCCTGTACGACGTGCTCCGCGC CAGCCGGAGCCCTCCAAGCGCCGGTACGACGTGCTCCGCGC < 41bp 0.364149856518176 0.722186000445636 0.14701837 0.8830445 prediction 0.444372000891271 Functional Gain - CFD ENSG00000197766 CDS Human protein_coding chr19:860927 chr19:860929 nonsynonymous SNV 0.067 2 23 hm5C_associated_SNPs_118691 0 0 1 0 2 CFD chr19:860861 3'AG 860861 Downstream 69bp
chr19 860929 860929 1 + T G KIRP 860927 + 860907 860947 41 CAGCCGGAGCCCTCCAAGCGCCTGTACGACGTGCTCCGCGC CAGCCGGAGCCCTCCAAGCGCCGGTACGACGTGCTCCGCGC < 41bp 0.364149856518176 0.722186000445636 0.14701837 0.8830445 prediction 0.444372000891271 Functional Gain - CFD ENSG00000197766 CDS Human protein_coding chr19:860927 chr19:860929 nonsynonymous SNV 0.067 2 23 hm5C_associated_SNPs_118691 0 0 1 0 2 CFD chr19:861005 5'GT 861005 Upstream 77bp
chr12 132632297 132632297 1 + C T rs148171235 132632296 + 132632276 132632316 41 CATGCAGGCAGCCGTGGATGCCGTGGCCCGGGTCACTGGCC CATGCAGGCAGCCGTGGATGCTGTGGCCCGGGTCACTGGCC < 41bp 0.520627334696159 0.742793110607731 0.70136416 0.37888488 prediction 0.444331551823144 Functional Gain - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132632296 chr12:132632297 synonymous SNV . 0 22 hm5C_associated_SNPs_118695 0 0 1 0 1 NOC4L chr12:132632327 5'GT 132632327 Upstream 31bp
chr12 57906714 57906714 1 + A G UCEC 57906711 + 57906691 57906731 41 CCTGCTGCTGAAGAATAATTCTGAGCTGCTTAACAACCTGG CCTGCTGCTGAAGAATAATTCTGGGCTGCTTAACAACCTGG < 41bp 0.557466745432074 0.779628098916517 0.5412285 0.8687866 prediction 0.444322706968886 Functional Gain - MARS ENSG00000166986 CDS Human protein_coding chr12:57906711 chr12:57906714 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_118697 0 0 1 0 1 MARS chr12:57906747 5'GT 57906747 Upstream 34bp
chr3 49736254 49736254 1 + C A rs200446137 49736250 + 49736230 49736270 41 GATGATGGCACTCTGTCCTTCTGCCTGTGAGTTTCCTATCT GATGATGGCACTCTGTCCTTCTGCATGTGAGTTTCCTATCT < 41bp 0.295222440479858 0.722160977674582 0.2427845 0.666054 prediction 0.444321955349164 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49736250 chr3:49736254 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_118698 0 0 1 0 2 RNF123 chr3:49736188 3'AG 49736188 Downstream 67bp
chr3 49736254 49736254 1 + C A rs200446137 49736250 + 49736230 49736270 41 GATGATGGCACTCTGTCCTTCTGCCTGTGAGTTTCCTATCT GATGATGGCACTCTGTCCTTCTGCATGTGAGTTTCCTATCT < 41bp 0.295222440479858 0.722160977674582 0.2427845 0.666054 prediction 0.444321955349164 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49736250 chr3:49736254 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_118698 0 0 1 0 2 RNF123 chr3:49736255 5'GT 49736255 Upstream 2bp
chr13 100637238 100637238 1 + C T UCEC 100637237 + 100637217 100637257 41 TGTGAGTTTGAGGGCTGCGACCGGCGCTTCGCCAACAGCAG TGTGAGTTTGAGGGCTGCGACTGGCGCTTCGCCAACAGCAG < 41bp 0.49143613034011 0.722155218626818 0.76586485 0.310934 prediction 0.444310437253636 Functional Gain - ZIC2 ENSG00000043355 CDS Human protein_coding chr13:100637237 chr13:100637238 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_118701 0 0 1 0 1 ZIC2 chr13:100637200 3'AG 100637200 Downstream 39bp
chr19 3747873 3747873 1 + C T UCEC 3747872 + 3747852 3747892 41 GCTGACCTCAGCTGCGACAGCCGCGTTAACAGCGACTACGA GCTGACCTCAGCTGCGACAGCTGCGTTAACAGCGACTACGA < 41bp 0.585766416030063 0.807918785218083 0.51256543 0.29946113 prediction 0.44430473837604 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3747872 chr19:3747873 nonsynonymous SNV 0.579 4 22 hm5C_associated_SNPs_118705 0 0 0 0 1 TJP3 chr19:3747792 3'AG 3747792 Downstream 82bp
chr17 46925460 46925460 1 + T C LIHC 46925458 + 46925438 46925478 41 ACAACCCGTGAGTATTACACCTTCATGTGGGTTACTTTGCC ACAACCCGTGAGTATTACACCTCCATGTGGGTTACTTTGCC < 41bp 0.404800710033872 0.722149438418906 0.41819835 0.96491873 prediction 0.444298876837812 Functional Gain - CALCOCO2 ENSG00000136436 CDS Human protein_coding chr17:46925458 chr17:46925460 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_118707 0 0 1 0 2 CALCOCO2 chr17:46925426 3'AG 46925426 Downstream 35bp
chr17 46925460 46925460 1 + T C LIHC 46925458 + 46925438 46925478 41 ACAACCCGTGAGTATTACACCTTCATGTGGGTTACTTTGCC ACAACCCGTGAGTATTACACCTCCATGTGGGTTACTTTGCC < 41bp 0.404800710033872 0.722149438418906 0.41819835 0.96491873 prediction 0.444298876837812 Functional Gain - CALCOCO2 ENSG00000136436 CDS Human protein_coding chr17:46925458 chr17:46925460 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_118707 0 0 1 0 2 CALCOCO2 chr17:46925528 5'GT 46925528 Upstream 69bp
chrX 10188767 10188767 1 + C T SKCM 10188766 + 10188746 10188786 41 TGTACTTCACGGAGGAACCCCCCGAGCTGCCGGCCAACAGC TGTACTTCACGGAGGAACCCCTCGAGCTGCCGGCCAACAGC < 41bp 0.618640440725419 0.840784491241953 0.42789382 0.93535185 prediction 0.444288101033069 Functional Gain - CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10188766 chrX:10188767 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_118709 0 0 0 0 1 CLCN4 chrX:10188701 3'AG 10188701 Downstream 67bp
chr17 79986538 79986538 1 + C G rs114763314 79986537 + 79986517 79986557 41 CAGACAGAGCCTGGAGGACTCCGAAAGCCTGCGCATCAAGG CAGACAGAGCCTGGAGGACTCGGAAAGCCTGCGCATCAAGG < 41bp 0.401055392042734 0.722142936927963 0.36750096 0.7593992 prediction 0.444285873855927 Functional Gain - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79986537 chr17:79986538 synonymous SNV . 0 22 hm5C_associated_SNPs_118711 0 0 1 0 2 LRRC45 chr17:79986489 3'AG 79986489 Downstream 50bp
chr17 79986538 79986538 1 + C G rs114763314 79986537 + 79986517 79986557 41 CAGACAGAGCCTGGAGGACTCCGAAAGCCTGCGCATCAAGG CAGACAGAGCCTGGAGGACTCGGAAAGCCTGCGCATCAAGG < 41bp 0.401055392042734 0.722142936927963 0.36750096 0.7593992 prediction 0.444285873855927 Functional Gain - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79986537 chr17:79986538 synonymous SNV . 0 22 hm5C_associated_SNPs_118711 0 0 1 0 2 LRRC45 chr17:79986559 5'GT 79986559 Upstream 22bp
chr7 55496114 55496114 1 + C T SKCM 55496113 + 55496093 55496133 41 GAGCACACGGGTGCCGCATTCCTGACAGACCCTATTCGCTC GAGCACACGGGTGCCGCATTCTTGACAGACCCTATTCGCTC < 41bp 0.453661522210768 0.722142360784542 0.012124777 0.05239573 prediction 0.444284721569083 Functional Gain - LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55496113 chr7:55496114 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_118712 0 0 0 0 2 LANCL2 chr7:55496068 3'AG 55496068 Downstream 47bp
chr7 55496114 55496114 1 + C T SKCM 55496113 + 55496093 55496133 41 GAGCACACGGGTGCCGCATTCCTGACAGACCCTATTCGCTC GAGCACACGGGTGCCGCATTCTTGACAGACCCTATTCGCTC < 41bp 0.453661522210768 0.722142360784542 0.012124777 0.05239573 prediction 0.444284721569083 Functional Gain - LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55496113 chr7:55496114 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_118712 0 0 0 0 2 LANCL2 chr7:55496140 5'GT 55496140 Upstream 27bp
chr17 45747200 45747200 1 + A G UCEC 45747197 + 45747177 45747217 41 TACAGTGTCTGATTGAGGGTCTCAGTGCTGAACCCAGAGTG TACAGTGTCTGATTGAGGGTCTCGGTGCTGAACCCAGAGTG < 41bp 0.475309244065761 0.722139884610961 0.056173444 0.109484136 prediction 0.444279769221922 Functional Gain - KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45747197 chr17:45747200 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_118713 0 0 1 0 1 KPNB1 chr17:45747235 5'GT 45747235 Upstream 36bp
chrX 47045017 47045017 1 + A G LUAD 47045014 + 47044994 47045034 41 CTCATCCGGCACCAGCAGCTCTCAGGGCTCCACAAGGTAAC CTCATCCGGCACCAGCAGCTCTCGGGGCTCCACAAGGTAAC < 41bp 0.566915717563601 0.789054580038484 0.041956455 0.216986 prediction 0.444277724949765 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47045014 chrX:47045017 synonymous SNV . 0 24 hm5C_associated_SNPs_118714 0 0 1 0 1 RBM10 chrX:47045029 5'GT 47045029 Upstream 13bp
chr12 16516816 16516816 1 + C A STAD 16516812 + 16516792 16516832 41 GAGTGGTCCCGACCCCTCTACAGCCATCCTGCACTTCAGAC GAGTGGTCCCGACCCCTCTACAGCAATCCTGCACTTCAGAC < 41bp 0.330323827526466 0.722133312074551 0.05771807 0.039094508 prediction 0.444266624149102 Functional Gain - MGST1 ENSG00000008394 CDS Human protein_coding chr12:16516812 chr12:16516816 synonymous SNV . 0 25 hm5C_associated_SNPs_118717 0 0 1 0 1 MGST1 chr12:16516729 3'AG 16516729 Downstream 88bp
chrX 140993283 140993283 1 + C T SKCM 140993282 + 140993262 140993302 41 TTGTCCTGAGGGGGAGGACTCCCAGTCTCCTCTCCAGATTC TTGTCCTGAGGGGGAGGACTCTCAGTCTCCTCTCCAGATTC < 41bp 0.524973974968844 0.747104104492813 0.15032417 0.26986802 prediction 0.444260259047938 Functional Gain - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140993282 chrX:140993283 synonymous SNV . 0 22 hm5C_associated_SNPs_118718 0 0 0 0 2 MAGEC1 chrX:140993195 3'AG 140993195 Downstream 89bp
chrX 140993283 140993283 1 + C T SKCM 140993282 + 140993262 140993302 41 TTGTCCTGAGGGGGAGGACTCCCAGTCTCCTCTCCAGATTC TTGTCCTGAGGGGGAGGACTCTCAGTCTCCTCTCCAGATTC < 41bp 0.524973974968844 0.747104104492813 0.15032417 0.26986802 prediction 0.444260259047938 Functional Gain - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140993282 chrX:140993283 synonymous SNV . 0 22 hm5C_associated_SNPs_118718 0 0 0 0 2 MAGEC1 chrX:140993333 5'GT 140993333 Upstream 51bp
chr2 27322348 27322348 1 + A G UCEC 27322345 + 27322325 27322365 41 GACGCCCTGGGCCCTGATGGCAAATTGCTCCACTCGGATGC GACGCCCTGGGCCCTGATGGCAAGTTGCTCCACTCGGATGC < 41bp 0.584793943922548 0.806919168928454 0.63339686 0.6888863 prediction 0.444250450011811 Functional Gain - KHK ENSG00000138030 CDS Human protein_coding chr2:27322345 chr2:27322348 synonymous SNV . 0 24 hm5C_associated_SNPs_118719 0 0 1 0 1 KHK chr2:27322288 3'AG 27322288 Downstream 61bp
chr6 134212935 134212935 1 + T A LUSC 134212931 + 134212911 134212951 41 AGCCGCTTATGTGGAACCACCGCGTCCTGACCTTGGAGGTG AGCCGCTTATGTGGAACCACCGCGACCTGACCTTGGAGGTG < 41bp 0.67311802414545 0.895238811583444 0.09887698 0.2142025 prediction 0.444241574875988 Functional Gain - TCF21 ENSG00000118526 CDS Human protein_coding chr6:134212931 chr6:134212935 nonsynonymous SNV 0.991 3 25 hm5C_associated_SNPs_118720 0 0 0 0 2 TCF21 chr6:134212851 3'AG 134212851 Downstream 85bp
chr6 134212935 134212935 1 + T A LUSC 134212931 + 134212911 134212951 41 AGCCGCTTATGTGGAACCACCGCGTCCTGACCTTGGAGGTG AGCCGCTTATGTGGAACCACCGCGACCTGACCTTGGAGGTG < 41bp 0.67311802414545 0.895238811583444 0.09887698 0.2142025 prediction 0.444241574875988 Functional Gain - TCF21 ENSG00000118526 CDS Human antisense chr6:134212931 chr6:134212935 nonsynonymous SNV 0.991 3 25 hm5C_associated_SNPs_118720 0 0 0 0 2 TCF21 chr6:134212948 5'GT 134212948 Upstream 14bp
chr11 123988252 123988252 1 + C T COAD 123988251 + 123988231 123988271 41 TGTGGCCTACTCACCCTCCACCGGGAGCCAGGTAAGCCTAA TGTGGCCTACTCACCCTCCACTGGGAGCCAGGTAAGCCTAA < 41bp 0.554314573773602 0.776428229365331 0.66187775 0.16511741 prediction 0.444227311183459 Functional Gain - VWA5A ENSG00000110002 CDS Human protein_coding chr11:123988251 chr11:123988252 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_118721 0 0 1 0 2 VWA5A chr11:123988204 3'AG 123988204 Downstream 49bp
chr11 123988252 123988252 1 + C T COAD 123988251 + 123988231 123988271 41 TGTGGCCTACTCACCCTCCACCGGGAGCCAGGTAAGCCTAA TGTGGCCTACTCACCCTCCACTGGGAGCCAGGTAAGCCTAA < 41bp 0.554314573773602 0.776428229365331 0.66187775 0.16511741 prediction 0.444227311183459 Functional Gain - VWA5A ENSG00000110002 CDS Human protein_coding chr11:123988251 chr11:123988252 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_118721 0 0 1 0 2 VWA5A chr11:123988261 5'GT 123988261 Upstream 10bp
chr6 146720744 146720744 1 + C A LUAD 146720743 + 146720723 146720763 41 TTCACCACCTCTGATGTTGTCCGCATGCATGTTGGCGATGG TTCACCACCTCTGATGTTGTCAGCATGCATGTTGGCGATGG < 41bp 0.555519789794599 0.777630347785185 0.3529909 0.38331318 prediction 0.444221115981173 Functional Gain - GRM1 ENSG00000152822 CDS Human protein_coding chr6:146720743 chr6:146720744 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_118723 0 0 0 0 1 GRM1 chr6:146720835 5'GT 146720835 Upstream 92bp
chr1 146740479 146740479 1 + A G UCEC 146740476 + 146740456 146740496 41 CTTTTGAAGTTGGAGACCACCTGACTGAGGCTAGTGGGAAG CTTTTGAAGTTGGAGACCACCTGGCTGAGGCTAGTGGGAAG < 41bp 0.529100458870886 0.751204224524245 0.27014703 0.4328066 prediction 0.444207531306719 Functional Gain - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146740476 chr1:146740479 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_118725 0 0 1 0 2 CHD1L chr1:146740441 3'AG 146740441 Downstream 39bp
chr1 146740479 146740479 1 + A G UCEC 146740476 + 146740456 146740496 41 CTTTTGAAGTTGGAGACCACCTGACTGAGGCTAGTGGGAAG CTTTTGAAGTTGGAGACCACCTGGCTGAGGCTAGTGGGAAG < 41bp 0.529100458870886 0.751204224524245 0.27014703 0.4328066 prediction 0.444207531306719 Functional Gain - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146740476 chr1:146740479 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_118725 0 0 1 0 2 CHD1L chr1:146740537 5'GT 146740537 Upstream 59bp
chr19 10742002 10742002 1 + A G LIHC 10741999 + 10741979 10742019 41 ACCTCACGTACCTGAATGCTCGCAGCTCCCGGGACTTTGAG ACCTCACGTACCTGAATGCTCGCGGCTCCCGGGACTTTGAG < 41bp 0.58442579679809 0.806529304192881 0.8047674 0.89999753 prediction 0.444207014789583 Functional Gain - SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10741999 chr19:10742002 nonsynonymous SNV 0.179 0 24 hm5C_associated_SNPs_118726 0 0 1 0 2 SLC44A2 chr19:10741951 3'AG 10741951 Downstream 52bp
chr19 10742002 10742002 1 + A G LIHC 10741999 + 10741979 10742019 41 ACCTCACGTACCTGAATGCTCGCAGCTCCCGGGACTTTGAG ACCTCACGTACCTGAATGCTCGCGGCTCCCGGGACTTTGAG < 41bp 0.58442579679809 0.806529304192881 0.8047674 0.89999753 prediction 0.444207014789583 Functional Gain - SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10741999 chr19:10742002 nonsynonymous SNV 0.179 0 24 hm5C_associated_SNPs_118726 0 0 1 0 2 SLC44A2 chr19:10742061 5'GT 10742061 Upstream 60bp
chr9 105767017 105767017 1 + C A PRAD 105767013 + 105766993 105767033 41 AATTAAGAGGAGATCGTAGACAACCATTATGGATGTACCGT AATTAAGAGGAGATCGTAGACAACAATTATGGATGTACCGT < 41bp 0.316320791090543 0.722102638814034 0.123232394 0.20198965 prediction 0.444205277628068 Functional Gain - CYLC2 ENSG00000155833 CDS Human protein_coding chr9:105767013 chr9:105767017 nonsynonymous SNV 0.875 4 25 hm5C_associated_SNPs_118727 0 0 0 0 1 CYLC2 chr9:105766977 3'AG 105766977 Downstream 41bp
chr6 111804797 111804797 1 + C G rs573182305 111804793 + 111804773 111804813 41 TTGGCAGGAGCTGCGATGCTCACACTTGCCTCGCCGACCGC TTGGCAGGAGCTGCGATGCTCACAGTTGCCTCGCCGACCGC < 41bp 0.44002055971432 0.722098795326705 0.07847792 0.45162952 prediction 0.44419759065341 Functional Gain - TRAF3IP2-AS1 ENSG00000231889 ncRNA_exonic Human antisense chr6:111804793 chr6:111804797 . . 0 25 hm5C_associated_SNPs_118729 0 0 1 0 1 TRAF3IP2-AS1 chr6:111804868 5'GT 111804868 Upstream 72bp
chr5 54620023 54620023 1 + T C UCEC 54620021 + 54620001 54620041 41 AAACTGTTGAAGGGTGTACACATGAGGTAAGCACAAACAGC AAACTGTTGAAGGGTGTACACACGAGGTAAGCACAAACAGC < 41bp 0.612235467927978 0.834329469081501 0.2849677 0.31982 prediction 0.444188002307045 Functional Gain - SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54620021 chr5:54620023 synonymous SNV . 0 23 hm5C_associated_SNPs_118730 0 0 1 0 2 SKIV2L2 chr5:54619960 3'AG 54619960 Downstream 64bp
chr5 54620023 54620023 1 + T C UCEC 54620021 + 54620001 54620041 41 AAACTGTTGAAGGGTGTACACATGAGGTAAGCACAAACAGC AAACTGTTGAAGGGTGTACACACGAGGTAAGCACAAACAGC < 41bp 0.612235467927978 0.834329469081501 0.2849677 0.31982 prediction 0.444188002307045 Functional Gain - SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54620021 chr5:54620023 synonymous SNV . 0 23 hm5C_associated_SNPs_118730 0 0 1 0 2 SKIV2L2 chr5:54620026 5'GT 54620026 Upstream 4bp
chr1 28285067 28285067 1 + C T COAD 28285066 + 28285046 28285086 41 GGAGCTCGAGTACCAGCTGACCGAGGCCTATGGGGTGCCGG GGAGCTCGAGTACCAGCTGACTGAGGCCTATGGGGTGCCGG < 41bp 0.534408503421338 0.756496963498701 0.9070133 0.8873671 prediction 0.444176920154727 Functional Gain - SMPDL3B ENSG00000130768 CDS Human protein_coding chr1:28285066 chr1:28285067 synonymous SNV . 0 22 hm5C_associated_SNPs_118731 0 0 1 0 1 SMPDL3B chr1:28284987 3'AG 28284987 Downstream 81bp
chr19 55221340 55221340 1 + C G LUSC 55221336 + 55221316 55221356 41 TCCCGACTCTTCTTTCCCTCCAGGCGTGTCTAGGAAGCCCT TCCCGACTCTTCTTTCCCTCCAGGGGTGTCTAGGAAGCCCT < 41bp 0.436265675692659 0.722084861683384 0.73083127 0.9015027 prediction 0.444169723366768 Functional Gain - LILRP2 ENSG00000170858 ncRNA_exonic Human transcribed_processed_pseudogene chr19:55221336 chr19:55221340 . . 0 25 hm5C_associated_SNPs_118733 0 0 0 0 1 LILRP2 chr19:55221339 3'AG 55221339 Downstream 2bp
chr16 19498540 19498540 1 + C A UCEC 19498536 + 19498516 19498556 41 TCAGCCTGATGATGAATTTCCAGCCTCCGAGCAAAGCCTGG TCAGCCTGATGATGAATTTCCAGCATCCGAGCAAAGCCTGG < 41bp 0.31566743052666 0.722082303190963 0.31304765 0.28033152 prediction 0.444164606381926 Functional Gain - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19498536 chr16:19498540 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_118734 0 0 0 0 1 TMC5 chr16:19498515 3'AG 19498515 Downstream 26bp
chr19 4408961 4408961 1 + C G rs368639662 4408957 + 4408937 4408977 41 GGGGAAAGCCGATGACATGTCAGACGATCAGGGTACTTCTG GGGGAAAGCCGATGACATGTCAGAGGATCAGGGTACTTCTG < 41bp 0.418818128954906 0.722080379751946 0.67987466 0.9148867 prediction 0.444160759503892 Functional Gain - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4408957 chr19:4408961 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_118735 0 0 1 0 1 CHAF1A chr19:4408900 3'AG 4408900 Downstream 62bp
chr2 110036094 110036094 1 + A G UCEC 110036091 + 110036071 110036111 41 CTCCCAAGGTCCAGCTGCCCCTCAACGTGTGAGCTGCCCTT CTCCCAAGGTCCAGCTGCCCCTCGACGTGTGAGCTGCCCTT < 41bp 0.531479384431354 0.753554108461574 0.0984205 0.8372787 prediction 0.444149448060441 Functional Gain - SH3RF3 ENSG00000172985 CDS Human protein_coding chr2:110036091 chr2:110036094 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_118738 0 0 0 0 2 SH3RF3 chr2:110035995 3'AG 110035995 Downstream 100bp
chr2 110036094 110036094 1 + A G UCEC 110036091 + 110036071 110036111 41 CTCCCAAGGTCCAGCTGCCCCTCAACGTGTGAGCTGCCCTT CTCCCAAGGTCCAGCTGCCCCTCGACGTGTGAGCTGCCCTT < 41bp 0.531479384431354 0.753554108461574 0.0984205 0.8372787 prediction 0.444149448060441 Functional Gain - SH3RF3 ENSG00000172985 CDS Human protein_coding chr2:110036091 chr2:110036094 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_118738 0 0 0 0 2 SH3RF3 chr2:110036098 5'GT 110036098 Upstream 5bp
chr17 78199666 78199666 1 + C G rs115961261 78199662 + 78199642 78199682 41 CTGGGACTACAGAACATCCCCAGGCCGTTCTTCCTGCAGGT CTGGGACTACAGAACATCCCCAGGGCGTTCTTCCTGCAGGT < 41bp 0.413277104332432 0.722051388045123 0.7820524 0.9242319 prediction 0.444102776090246 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78199662 chr17:78199666 nonsynonymous SNV 0.982 1 25 hm5C_associated_SNPs_118743 0 0 0 0 2 SLC26A11 chr17:78199636 3'AG 78199636 Downstream 31bp
chr17 78199666 78199666 1 + C G rs115961261 78199662 + 78199642 78199682 41 CTGGGACTACAGAACATCCCCAGGCCGTTCTTCCTGCAGGT CTGGGACTACAGAACATCCCCAGGGCGTTCTTCCTGCAGGT < 41bp 0.413277104332432 0.722051388045123 0.7820524 0.9242319 prediction 0.444102776090246 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78199662 chr17:78199666 nonsynonymous SNV 0.982 1 25 hm5C_associated_SNPs_118743 0 0 0 0 2 SLC26A11 chr17:78199715 5'GT 78199715 Upstream 50bp
chr10 3183884 3183884 1 + T C rs111878609 3183882 + 3183862 3183902 41 ACAGGCTCCTTGAAGACGCCCGTGGTGAGATCAGCCCCAGG ACAGGCTCCTTGAAGACGCCCGCGGTGAGATCAGCCCCAGG < 41bp 0.532860604233357 0.754873776884905 0.49876472 0.31153917 prediction 0.444026345303095 Functional Gain - PITRM1-AS1 ENSG00000107959 CDS Human antisense chr10:3183882 chr10:3183884 unknown . 0 23 hm5C_associated_SNPs_118752 0 0 0 0 1 PITRM1-AS1 chr10:3183961 5'GT 3183961 Upstream 78bp
chr1 170928687 170928687 1 + T G GBM 170928685 + 170928665 170928705 41 TGCTAGTTGTCATGCCAAGTCTTGACAAAGTAAAAGAAATG TGCTAGTTGTCATGCCAAGTCTGGACAAAGTAAAAGAAATG < 41bp 0.393169597088061 0.722005811731724 0.043397784 0.07267386 prediction 0.444011623463448 Functional Gain - MROH9 ENSG00000117501 CDS Human protein_coding chr1:170928685 chr1:170928687 synonymous SNV . 0 23 hm5C_associated_SNPs_118757 0 0 0 0 2 MROH9 chr1:170928603 3'AG 170928603 Downstream 85bp
chr1 170928687 170928687 1 + T G GBM 170928685 + 170928665 170928705 41 TGCTAGTTGTCATGCCAAGTCTTGACAAAGTAAAAGAAATG TGCTAGTTGTCATGCCAAGTCTGGACAAAGTAAAAGAAATG < 41bp 0.393169597088061 0.722005811731724 0.043397784 0.07267386 prediction 0.444011623463448 Functional Gain - MROH9 ENSG00000117501 CDS Human protein_coding chr1:170928685 chr1:170928687 synonymous SNV . 0 23 hm5C_associated_SNPs_118757 0 0 0 0 2 MROH9 chr1:170928738 5'GT 170928738 Upstream 52bp
chr19 17611562 17611562 1 + C T UCEC 17611561 + 17611541 17611581 41 GAGCTGGGCTACATGTACTTCCGGGACCGTAGCGGGGACAC GAGCTGGGCTACATGTACTTCTGGGACCGTAGCGGGGACAC < 41bp 0.575805688288871 0.79781146929539 0.81857395 0.5269019 prediction 0.44401156201304 Functional Gain - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17611561 chr19:17611562 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_118758 0 0 1 0 1 SLC27A1 chr19:17611521 3'AG 17611521 Downstream 42bp
chr3 100000595 100000595 1 + A G GBM 100000592 + 100000572 100000612 41 AATCTTTCTTCCAGATTGCTCTGAATGTTGCAGGAAAAGGT AATCTTTCTTCCAGATTGCTCTGGATGTTGCAGGAAAAGGT < 41bp 0.512099776887363 0.734098951646735 0.20019537 0.2973749 prediction 0.443998349518744 Functional Gain - TBC1D23 ENSG00000036054 CDS Human protein_coding chr3:100000592 chr3:100000595 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_118760 0 0 1 0 2 TBC1D23 chr3:100000586 3'AG 100000586 Downstream 10bp
chr3 100000595 100000595 1 + A G GBM 100000592 + 100000572 100000612 41 AATCTTTCTTCCAGATTGCTCTGAATGTTGCAGGAAAAGGT AATCTTTCTTCCAGATTGCTCTGGATGTTGCAGGAAAAGGT < 41bp 0.512099776887363 0.734098951646735 0.20019537 0.2973749 prediction 0.443998349518744 Functional Gain - TBC1D23 ENSG00000036054 CDS Human protein_coding chr3:100000592 chr3:100000595 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_118760 0 0 1 0 2 TBC1D23 chr3:100000691 5'GT 100000691 Upstream 97bp
chr11 6964384 6964384 1 + T C LUSC 6964381 + 6964361 6964401 41 GTGGGGGCAACTGGACTCTGCTGTAAAGAACCTGTACAGGA GTGGGGGCAACTGGACTCTGCTGCAAAGAACCTGTACAGGA < 41bp 0.529657030257759 0.751646101211683 0.101394564 0.10977906 prediction 0.443978141907847 Functional Gain - ZNF215 ENSG00000149054 CDS Human protein_coding chr11:6964381 chr11:6964384 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_118763 0 0 0 0 2 ZNF215 chr11:6964314 3'AG 6964314 Downstream 71bp
chr11 6964384 6964384 1 + T C LUSC 6964381 + 6964361 6964401 41 GTGGGGGCAACTGGACTCTGCTGTAAAGAACCTGTACAGGA GTGGGGGCAACTGGACTCTGCTGCAAAGAACCTGTACAGGA < 41bp 0.529657030257759 0.751646101211683 0.101394564 0.10977906 prediction 0.443978141907847 Functional Gain - ZNF215 ENSG00000149054 CDS Human protein_coding chr11:6964381 chr11:6964384 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_118763 0 0 0 0 2 ZNF215 chr11:6964446 5'GT 6964446 Upstream 63bp
chr3 111688567 111688567 1 + C T UCEC 111688566 + 111688546 111688586 41 TTGACACGCTACCTGCCTGTCCGGAAGGAAGACTTTGATTT TTGACACGCTACCTGCCTGTCTGGAAGGAAGACTTTGATTT < 41bp 0.47508762397027 0.721988014532435 0.34584093 0.28807724 prediction 0.44397602906487 Functional Gain - PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111688566 chr3:111688567 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_118764 0 0 0 0 1 PHLDB2 chr3:111688537 3'AG 111688537 Downstream 31bp
chr1 155699118 155699118 1 + T C rs4933 155699116 + 155699096 155699136 41 CCGTGGATGGAATCAATGCTCTTTGGGGAAGAACCACTCTG CCGTGGATGGAATCAATGCTCTCTGGGGAAGAACCACTCTG < 41bp 0.44070389245622 0.721987206217448 0.33994007 0.2548076 prediction 0.443974412434897 Functional Gain - DAP3 ENSG00000132676 CDS Human protein_coding chr1:155699116 chr1:155699118 synonymous SNV . 0 23 hm5C_associated_SNPs_118766 0 0 1 0 1 DAP3 chr1:155699157 5'GT 155699157 Upstream 40bp
chr7 133863343 133863343 1 + C T rs61749957 133863342 + 133863322 133863362 41 TTGTCAACAGCGTGATGCAGCCGCAGAGGATCTTTGACAGG TTGTCAACAGCGTGATGCAGCTGCAGAGGATCTTTGACAGG < 41bp 0.465818355176766 0.721976386433781 0.19198906 0.35499072 prediction 0.443952772867563 Functional Gain - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133863342 chr7:133863343 nonsynonymous SNV 0.954 4 22 hm5C_associated_SNPs_118771 0 0 0 0 2 LRGUK chr7:133863255 3'AG 133863255 Downstream 89bp
chr7 133863343 133863343 1 + C T rs61749957 133863342 + 133863322 133863362 41 TTGTCAACAGCGTGATGCAGCCGCAGAGGATCTTTGACAGG TTGTCAACAGCGTGATGCAGCTGCAGAGGATCTTTGACAGG < 41bp 0.465818355176766 0.721976386433781 0.19198906 0.35499072 prediction 0.443952772867563 Functional Gain - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133863342 chr7:133863343 nonsynonymous SNV 0.954 4 22 hm5C_associated_SNPs_118771 0 0 0 0 2 LRGUK chr7:133863361 5'GT 133863361 Upstream 19bp
chr1 247737523 247737523 1 + A G LUSC 247737520 + 247737500 247737540 41 TCCCCCATCAGAGATCCTCCCTGAGCTCCAATGATGATGGC TCCCCCATCAGAGATCCTCCCTGGGCTCCAATGATGATGGC < 41bp 0.530423694033154 0.752398090318211 0.024299681 0.029809743 prediction 0.443948792570114 Functional Gain - GCSAML ENSG00000169224 CDS Human protein_coding chr1:247737520 chr1:247737523 nonsynonymous SNV 0.595 0 24 hm5C_associated_SNPs_118772 0 0 0 0 1 GCSAML chr1:247737445 3'AG 247737445 Downstream 79bp
chr1 173819569 173819569 1 + C T UCEC 173819568 + 173819548 173819588 41 ATTAATCAGACTAATGGAGACCCAAGAGGAAGATGTGGTCC ATTAATCAGACTAATGGAGACTCAAGAGGAAGATGTGGTCC < 41bp 0.463871944857046 0.721967076928964 0.074716896 0.2728405 prediction 0.443934153857928 Functional Gain - DARS2 ENSG00000117593 CDS Human protein_coding chr1:173819568 chr1:173819569 synonymous SNV . 0 22 hm5C_associated_SNPs_118773 0 0 1 0 1 DARS2 chr1:173819617 5'GT 173819617 Upstream 49bp
chr15 45560574 45560574 1 + C T HNSC 45560573 + 45560553 45560593 41 GACATACAGGGGCTCACTTTCCAGGTAAAGGATTACATTTG GACATACAGGGGCTCACTTTCTAGGTAAAGGATTACATTTG < 41bp 0.57082851072279 0.792792635154358 0.9303216 0.90839857 prediction 0.443928248863136 Functional Gain - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45560573 chr15:45560574 stopgain 0.982 1 22 hm5C_associated_SNPs_118775 0 0 0 0 1 SLC28A2 chr15:45560576 5'GT 45560576 Upstream 3bp
chr15 41105992 41105992 1 + C T rs72735636 41105991 + 41105971 41106011 41 TCTCGACCCTGGACGCAACCCCGCGGGGCAGAGCCTGAGGT TCTCGACCCTGGACGCAACCCTGCGGGGCAGAGCCTGAGGT < 41bp 0.584581201715787 0.806545026257174 0.44445142 0.23580295 prediction 0.443927649082775 Functional Gain - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105991 chr15:41105992 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_118776 0 0 1 0 2 ZFYVE19 chr15:41105911 3'AG 41105911 Downstream 82bp
chr15 41105992 41105992 1 + C T rs72735636 41105991 + 41105971 41106011 41 TCTCGACCCTGGACGCAACCCCGCGGGGCAGAGCCTGAGGT TCTCGACCCTGGACGCAACCCTGCGGGGCAGAGCCTGAGGT < 41bp 0.584581201715787 0.806545026257174 0.44445142 0.23580295 prediction 0.443927649082775 Functional Gain - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105991 chr15:41105992 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_118776 0 0 1 0 2 ZFYVE19 chr15:41106009 5'GT 41106009 Upstream 18bp
chr17 44952652 44952652 1 + A G STAD 44952649 + 44952629 44952669 41 TCAAGTACAGCACCAAGTTTCTGAGCAACTTCCTGGGGTCC TCAAGTACAGCACCAAGTTTCTGGGCAACTTCCTGGGGTCC < 41bp 0.581972044938595 0.803933573941764 0.8217559 0.9053844 prediction 0.443923058006337 Functional Gain - WNT9B ENSG00000158955 CDS Human protein_coding chr17:44952649 chr17:44952652 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_118777 0 0 0 0 1 WNT9B chr17:44952732 5'GT 44952732 Upstream 81bp
chr9 138557176 138557176 1 + C T UCEC 138557175 + 138557155 138557195 41 CCAGAACTTCAGGAACGGGACCGAGACCCACACGCTGGCGC CCAGAACTTCAGGAACGGGACTGAGACCCACACGCTGGCGC < 41bp 0.487375954856307 0.721951636691829 0.6415238 0.4169871 prediction 0.443903273383659 Functional Gain - LCN9 ENSG00000148386 CDS Human protein_coding chr9:138557175 chr9:138557176 synonymous SNV . 0 22 hm5C_associated_SNPs_118779 0 0 0 0 2 LCN9 chr9:138557091 3'AG 138557091 Downstream 86bp
chr9 138557176 138557176 1 + C T UCEC 138557175 + 138557155 138557195 41 CCAGAACTTCAGGAACGGGACCGAGACCCACACGCTGGCGC CCAGAACTTCAGGAACGGGACTGAGACCCACACGCTGGCGC < 41bp 0.487375954856307 0.721951636691829 0.6415238 0.4169871 prediction 0.443903273383659 Functional Gain - LCN9 ENSG00000148386 CDS Human protein_coding chr9:138557175 chr9:138557176 synonymous SNV . 0 22 hm5C_associated_SNPs_118779 0 0 0 0 2 LCN9 chr9:138557201 5'GT 138557201 Upstream 26bp
chr2 120712791 120712791 1 + T C UCEC 120712789 + 120712769 120712809 41 AGCCAGATTTCCAGTATATTCCTGAGAAAGCCCCACTAGAT AGCCAGATTTCCAGTATATTCCCGAGAAAGCCCCACTAGAT < 41bp 0.433718725242762 0.721951548471154 0.21136391 0.288347 prediction 0.443903096942307 Functional Gain - PTPN4 ENSG00000088179 CDS Human protein_coding chr2:120712789 chr2:120712791 synonymous SNV . 0 23 hm5C_associated_SNPs_118780 0 0 1 0 1 PTPN4 chr2:120712733 3'AG 120712733 Downstream 59bp
chr1 10473274 10473274 1 + C T SKCM 10473273 + 10473253 10473293 41 AGGGAAGTGGACCGCCATCTCCGCCCTGGAATACGGCGTAC AGGGAAGTGGACCGCCATCTCTGCCCTGGAATACGGCGTAC < 41bp 0.585220141578101 0.807165580184319 0.35034698 0.28554887 prediction 0.443890877212437 Functional Gain - PGD ENSG00000142657 CDS Human protein_coding chr1:10473273 chr1:10473274 synonymous SNV . 0 22 hm5C_associated_SNPs_118784 0 0 1 0 1 PGD chr1:10473308 5'GT 10473308 Upstream 35bp
chr17 27026839 27026839 1 + C T TGCT 27026838 + 27026818 27026858 41 ACTCCAGAGGGATTCCGGTACCGGGGCCAGATCTTCCCAAC ACTCCAGAGGGATTCCGGTACTGGGGCCAGATCTTCCCAAC < 41bp 0.471670950969733 0.721945054230691 0.942804 0.9111042 prediction 0.443890108461382 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27026838 chr17:27026839 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_118785 0 0 1 0 2 SUPT6H chr17:27026799 3'AG 27026799 Downstream 41bp
chr17 27026839 27026839 1 + C T TGCT 27026838 + 27026818 27026858 41 ACTCCAGAGGGATTCCGGTACCGGGGCCAGATCTTCCCAAC ACTCCAGAGGGATTCCGGTACTGGGGCCAGATCTTCCCAAC < 41bp 0.471670950969733 0.721945054230691 0.942804 0.9111042 prediction 0.443890108461382 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27026838 chr17:27026839 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_118785 0 0 1 0 2 SUPT6H chr17:27026911 5'GT 27026911 Upstream 73bp
chr1 240341333 240341333 1 + C T HNSC 240341332 + 240341312 240341352 41 TGGGGCCACCATCCAAACCTCCCGATGAGGAACACAGGCTC TGGGGCCACCATCCAAACCTCTCGATGAGGAACACAGGCTC < 41bp 0.46243672177498 0.721942192299131 0.26420966 0.8634066 prediction 0.443884384598261 Functional Gain - FMN2 ENSG00000155816 CDS Human protein_coding chr1:240341332 chr1:240341333 nonsynonymous SNV 0.005 1 22 hm5C_associated_SNPs_118786 0 0 0 0 1 FMN2 chr1:240341368 5'GT 240341368 Upstream 36bp
chr4 166388900 166388900 1 + C T GBM 166388899 + 166388879 166388919 41 GCCCAGGGAATAGATCTGAACCGGAACTTTCCAGACCTGGA GCCCAGGGAATAGATCTGAACTGGAACTTTCCAGACCTGGA < 41bp 0.577448200585015 0.79938213703078 0.10461575 0.14844033 prediction 0.443867872891529 Functional Gain - CPE ENSG00000109472 CDS Human protein_coding chr4:166388899 chr4:166388900 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_118787 0 0 1 0 1 CPE chr4:166388840 3'AG 166388840 Downstream 61bp
chr20 126116 126116 1 + C T rs190798121 126115 + 126095 126135 41 TTTGCAAGAAGAAGTGCAAACCTGAAGAGATGCATGTAAAG TTTGCAAGAAGAAGTGCAAACTTGAAGAGATGCATGTAAAG < 41bp 0.536173685047448 0.758102897990222 0.35846123 0.33812058 prediction 0.443858425885549 Functional Gain - DEFB126 ENSG00000125788 CDS Human protein_coding chr20:126115 chr20:126116 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_118789 0 0 0 0 1 DEFB126 chr20:126056 3'AG 126056 Downstream 61bp
chr4 71824681 71824681 1 + A G UCEC 71824678 + 71824658 71824698 41 CTCTTAAAACACGCAGAAGCCACACTTGGCAGTGGCAACCT CTCTTAAAACACGCAGAAGCCACGCTTGGCAGTGGCAACCT < 41bp 0.520660445916905 0.742589284399465 0.022543311 0.021649271 prediction 0.443857676965119 Functional Gain - MOB1B ENSG00000173542 CDS Human protein_coding chr4:71824678 chr4:71824681 synonymous SNV . 0 24 hm5C_associated_SNPs_118790 0 0 1 0 2 MOB1B chr4:71824591 3'AG 71824591 Downstream 91bp
chr4 71824681 71824681 1 + A G UCEC 71824678 + 71824658 71824698 41 CTCTTAAAACACGCAGAAGCCACACTTGGCAGTGGCAACCT CTCTTAAAACACGCAGAAGCCACGCTTGGCAGTGGCAACCT < 41bp 0.520660445916905 0.742589284399465 0.022543311 0.021649271 prediction 0.443857676965119 Functional Gain - MOB1B ENSG00000173542 CDS Human protein_coding chr4:71824678 chr4:71824681 synonymous SNV . 0 24 hm5C_associated_SNPs_118790 0 0 1 0 2 MOB1B chr4:71824757 5'GT 71824757 Upstream 77bp
chr15 100214636 100214636 1 + A G UCEC 100214633 + 100214613 100214653 41 CAGAACTTTTCAATGTCTGTCACAGTTCCAGTGACCAGCCC CAGAACTTTTCAATGTCTGTCACGGTTCCAGTGACCAGCCC < 41bp 0.527392482572484 0.749319155676625 0.1929129 0.2089096 prediction 0.443853346208283 Functional Gain - MEF2A ENSG00000068305 CDS Human protein_coding chr15:100214633 chr15:100214636 synonymous SNV . 0 24 hm5C_associated_SNPs_118791 0 0 1 0 1 MEF2A chr15:100214598 3'AG 100214598 Downstream 39bp
chr3 12560665 12560665 1 + C A SKCM 12560664 + 12560644 12560684 41 TCGAAGCAAGGGCTGGGTGCCCAAAGTGGGACTCAAGTACG TCGAAGCAAGGGCTGGGTGCCAAAAGTGGGACTCAAGTACG < 41bp 0.457798734766076 0.721921341689361 0.038954854 0.14417017 prediction 0.443842683378722 Functional Gain - TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12560664 chr3:12560665 synonymous SNV . 0 22 hm5C_associated_SNPs_118792 0 0 1 0 1 TSEN2 chr3:12560696 5'GT 12560696 Upstream 32bp
chr1 158812150 158812150 1 + C A HNSC 158812149 + 158812129 158812169 41 AGACAAACTAATAGAACTTGCCAAAGATATGCCATCACTTA AGACAAACTAATAGAACTTGCAAAAGATATGCCATCACTTA < 41bp 0.474956823741472 0.72192082980556 0.35251713 0.4940735 prediction 0.44384165961112 Functional Gain - MNDA ENSG00000163563 CDS Human protein_coding chr1:158812149 chr1:158812150 synonymous SNV . 0 22 hm5C_associated_SNPs_118793 0 0 0 0 1 MNDA chr1:158812208 5'GT 158812208 Upstream 59bp
chr11 117034568 117034568 1 + T A LAML 117034564 + 117034544 117034584 41 GTGGGATCGAGGCCATTGTACAACTTATCAACACAAGGCAG GTGGGATCGAGGCCATTGTACAACATATCAACACAAGGCAG < 41bp 0.386445077831077 0.721919777150051 0.10640472 0.09538004 prediction 0.443839554300101 Functional Gain - PAFAH1B2 ENSG00000168092 CDS Human protein_coding chr11:117034564 chr11:117034568 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_118794 0 0 1 3 2 PAFAH1B2 chr11:117034486 3'AG 117034486 Downstream 83bp
chr11 117034568 117034568 1 + T A LAML 117034564 + 117034544 117034584 41 GTGGGATCGAGGCCATTGTACAACTTATCAACACAAGGCAG GTGGGATCGAGGCCATTGTACAACATATCAACACAAGGCAG < 41bp 0.386445077831077 0.721919777150051 0.10640472 0.09538004 prediction 0.443839554300101 Functional Gain - PAFAH1B2 ENSG00000168092 CDS Human protein_coding chr11:117034564 chr11:117034568 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_118794 0 0 1 3 2 PAFAH1B2 chr11:117034608 5'GT 117034608 Upstream 41bp
chr1 176708829 176708829 1 + C T rs377578831 176708828 + 176708808 176708848 41 TGACAACTGATGGCCTAGTTCCCGGAGAGCATCAGCAGCCG TGACAACTGATGGCCTAGTTCTCGGAGAGCATCAGCAGCCG < 41bp 0.476494587456932 0.721918073961103 0.33345866 0.23356116 prediction 0.443836147922206 Functional Gain - PAPPA2 ENSG00000116183 CDS Human protein_coding chr1:176708828 chr1:176708829 nonsynonymous SNV 0.023 0 22 hm5C_associated_SNPs_118796 0 0 0 0 2 PAPPA2 chr1:176708762 3'AG 176708762 Downstream 68bp
chr1 176708829 176708829 1 + C T rs377578831 176708828 + 176708808 176708848 41 TGACAACTGATGGCCTAGTTCCCGGAGAGCATCAGCAGCCG TGACAACTGATGGCCTAGTTCTCGGAGAGCATCAGCAGCCG < 41bp 0.476494587456932 0.721918073961103 0.33345866 0.23356116 prediction 0.443836147922206 Functional Gain - PAPPA2 ENSG00000116183 CDS Human protein_coding chr1:176708828 chr1:176708829 nonsynonymous SNV 0.023 0 22 hm5C_associated_SNPs_118796 0 0 0 0 2 PAPPA2 chr1:176708897 5'GT 176708897 Upstream 69bp
chr11 7654163 7654163 1 + C T PAAD 7654162 + 7654142 7654182 41 GCCACAGAAATCACTGGAAACCAGGTAAGAGGCCTGGGCAT GCCACAGAAATCACTGGAAACTAGGTAAGAGGCCTGGGCAT < 41bp 0.481933269477816 0.72190963666443 0.90198207 0.42277056 prediction 0.443819273328861 Functional Gain - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7654162 chr11:7654163 synonymous SNV . 0 22 hm5C_associated_SNPs_118800 0 0 1 0 2 PPFIBP2 chr11:7654098 3'AG 7654098 Downstream 66bp
chr11 7654163 7654163 1 + C T PAAD 7654162 + 7654142 7654182 41 GCCACAGAAATCACTGGAAACCAGGTAAGAGGCCTGGGCAT GCCACAGAAATCACTGGAAACTAGGTAAGAGGCCTGGGCAT < 41bp 0.481933269477816 0.72190963666443 0.90198207 0.42277056 prediction 0.443819273328861 Functional Gain - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7654162 chr11:7654163 synonymous SNV . 0 22 hm5C_associated_SNPs_118800 0 0 1 0 2 PPFIBP2 chr11:7654165 5'GT 7654165 Upstream 3bp
chr3 50683688 50683688 1 + T C UCEC 50683685 + 50683665 50683705 41 AATCCTGAGTGGTCAGAAGTCTCTGAGGATGGTGAGTGAAC AATCCTGAGTGGTCAGAAGTCTCCGAGGATGGTGAGTGAAC < 41bp 0.523713826530909 0.745620128004579 0.25832406 0.74815786 prediction 0.443812602947341 Functional Gain - MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50683685 chr3:50683688 synonymous SNV . 0 24 hm5C_associated_SNPs_118803 0 0 1 0 1 MAPKAPK3 chr3:50683695 5'GT 50683695 Upstream 8bp
chr6 39033549 39033549 1 + T A ACC 39033545 + 39033525 39033565 41 GGCCTCTGGCTGCAGAAGGACAACTCCAGCCTGCCCTGGAG GGCCTCTGGCTGCAGAAGGACAACACCAGCCTGCCCTGGAG < 41bp 0.373853332601544 0.721898249283568 0.28000957 0.32855883 prediction 0.443796498567135 Functional Gain - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39033545 chr6:39033549 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_118804 0 0 0 0 1 GLP1R chr6:39033487 3'AG 39033487 Downstream 63bp
chr16 2079770 2079770 1 + A G rs559412284 2079767 + 2079747 2079787 41 ACACACCGGCAGCCACAGCTCCGAAGCTGGCAAGAAGGTAT ACACACCGGCAGCCACAGCTCCGGAGCTGGCAAGAAGGTAT < 41bp 0.56399837170824 0.785896109622865 0.5260853 0.855343 prediction 0.443795475829249 Functional Gain - SLC9A3R2 ENSG00000065054 CDS Human protein_coding chr16:2079767 chr16:2079770 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_118805 0 0 0 0 1 SLC9A3R2 chr16:2079783 5'GT 2079783 Upstream 14bp
chr3 113673211 113673211 1 + C A BLCA 113673210 + 113673190 113673230 41 CCAGCCCGGGCATGGCACTGCCGGATATGTGGCATCTGTGT CCAGCCCGGGCATGGCACTGCAGGATATGTGGCATCTGTGT < 41bp 0.57583017293448 0.797726682980646 0.8623878 0.8827692 prediction 0.443793020092331 Functional Gain - ZDHHC23 ENSG00000184307 CDS Human protein_coding chr3:113673210 chr3:113673211 synonymous SNV . 0 22 hm5C_associated_SNPs_118806 0 0 1 0 1 ZDHHC23 chr3:113673257 5'GT 113673257 Upstream 47bp
chr19 13988560 13988560 1 + A G LUSC 13988557 + 13988537 13988577 41 ACACAGGACACAGGCCACCGCCGAGGAGGAGGAGGAGGAGC ACACAGGACACAGGCCACCGCCGGGGAGGAGGAGGAGGAGC < 41bp 0.5539397855084 0.775834419352648 0.15536848 0.37768373 prediction 0.443789267688497 Functional Gain - NANOS3 ENSG00000187556 CDS Human protein_coding chr19:13988557 chr19:13988560 synonymous SNV . 0 24 hm5C_associated_SNPs_118807 0 0 0 0 1 NANOS3 chr19:13988579 5'GT 13988579 Upstream 20bp
chr11 47256959 47256959 1 + T C UCEC 47256957 + 47256937 47256977 41 CACTTCCAGCACCTCACACCCATCAAGGTGAGTGGCGGTGG CACTTCCAGCACCTCACACCCACCAAGGTGAGTGGCGGTGG < 41bp 0.599204723889232 0.821084941423462 0.11096713 0.16614774 prediction 0.44376043506846 Functional Gain - DDB2 ENSG00000134574 CDS Human protein_coding chr11:47256957 chr11:47256959 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_118811 0 0 1 0 1 DDB2 chr11:47256963 5'GT 47256963 Upstream 5bp
chr7 115891867 115891867 1 + C T UCEC 115891866 + 115891846 115891886 41 AGGTGACCCAGCCATCTATGCCGAAAGGGCTGGCTATGATA AGGTGACCCAGCCATCTATGCTGAAAGGGCTGGCTATGATA < 41bp 0.458092057068215 0.721870947755681 0.049400777 0.1780585 prediction 0.443741895511363 Functional Gain - TES ENSG00000135269 CDS Human protein_coding chr7:115891866 chr7:115891867 synonymous SNV . 0 22 hm5C_associated_SNPs_118814 0 0 1 0 1 TES chr7:115891814 3'AG 115891814 Downstream 54bp
chr19 17534390 17534390 1 + T C rs148484007 17534388 + 17534368 17534408 41 CCCCGAGGTCTCAGCCGGGACATGCAGGGCCTCTCTCTGGA CCCCGAGGTCTCAGCCGGGACACGCAGGGCCTCTCTCTGGA < 41bp 0.455241724951753 0.721869545440557 0.13797179 0.0270482 prediction 0.443739090881113 Functional Gain - MVB12A ENSG00000141971 CDS Human protein_coding chr19:17534388 chr19:17534390 nonsynonymous SNV 0.976 0 23 hm5C_associated_SNPs_118815 0 0 1 0 2 MVB12A chr19:17534307 3'AG 17534307 Downstream 84bp
chr19 17534390 17534390 1 + T C rs148484007 17534388 + 17534368 17534408 41 CCCCGAGGTCTCAGCCGGGACATGCAGGGCCTCTCTCTGGA CCCCGAGGTCTCAGCCGGGACACGCAGGGCCTCTCTCTGGA < 41bp 0.455241724951753 0.721869545440557 0.13797179 0.0270482 prediction 0.443739090881113 Functional Gain - MVB12A ENSG00000141971 CDS Human protein_coding chr19:17534388 chr19:17534390 nonsynonymous SNV 0.976 0 23 hm5C_associated_SNPs_118815 0 0 1 0 2 MVB12A chr19:17534426 5'GT 17534426 Upstream 37bp
chr20 61162259 61162259 1 + C A LUSC 61162258 + 61162238 61162278 41 TCCCGCAGCCGTGGAGAGGACCCAGCAGGTGGCGCGGGGAG TCCCGCAGCCGTGGAGAGGACACAGCAGGTGGCGCGGGGAG < 41bp 0.596188747962113 0.818048593318035 0.50808257 0.42827037 prediction 0.443719690711844 Functional Gain - MIR1-1HG ENSG00000174407 CDS Human antisense chr20:61162258 chr20:61162259 synonymous SNV . 0 22 hm5C_associated_SNPs_118818 0 0 0 0 2 MIR1-1HG chr20:61162196 3'AG 61162196 Downstream 64bp
chr20 61162259 61162259 1 + C A LUSC 61162258 + 61162238 61162278 41 TCCCGCAGCCGTGGAGAGGACCCAGCAGGTGGCGCGGGGAG TCCCGCAGCCGTGGAGAGGACACAGCAGGTGGCGCGGGGAG < 41bp 0.596188747962113 0.818048593318035 0.50808257 0.42827037 prediction 0.443719690711844 Functional Gain - MIR1-1HG ENSG00000174407 CDS Human antisense chr20:61162258 chr20:61162259 synonymous SNV . 0 22 hm5C_associated_SNPs_118818 0 0 0 0 2 MIR1-1HG chr20:61162307 5'GT 61162307 Upstream 49bp
chr22 44489850 44489850 1 + C G rs34476853 44489849 + 44489829 44489869 41 GCAAGAATGCCATCAACTCACCGATGTCCCCCGCCCTGGTG GCAAGAATGCCATCAACTCACGGATGTCCCCCGCCCTGGTG < 41bp 0.387695514311305 0.721853858109322 0.21486562 0.8709854 prediction 0.443707716218645 Functional Gain - PARVB ENSG00000188677 CDS Human protein_coding chr22:44489849 chr22:44489850 nonsynonymous SNV 0.976 3 22 hm5C_associated_SNPs_118820 0 0 1 0 2 PARVB chr22:44489808 3'AG 44489808 Downstream 43bp
chr22 44489850 44489850 1 + C G rs34476853 44489849 + 44489829 44489869 41 GCAAGAATGCCATCAACTCACCGATGTCCCCCGCCCTGGTG GCAAGAATGCCATCAACTCACGGATGTCCCCCGCCCTGGTG < 41bp 0.387695514311305 0.721853858109322 0.21486562 0.8709854 prediction 0.443707716218645 Functional Gain - PARVB ENSG00000188677 CDS Human protein_coding chr22:44489849 chr22:44489850 nonsynonymous SNV 0.976 3 22 hm5C_associated_SNPs_118820 0 0 1 0 2 PARVB chr22:44489897 5'GT 44489897 Upstream 48bp
chr1 155279704 155279704 1 + C T SKCM 155279703 + 155279683 155279723 41 CTGGTGCACGGGTACCCAGTCCTGGCCTGGCACAGTGCCCG CTGGTGCACGGGTACCCAGTCTTGGCCTGGCACAGTGCCCG < 41bp 0.47920035203738 0.721836300402034 0.19512203 0.11368722 prediction 0.443672600804069 Functional Gain - FDPS ENSG00000160752 CDS Human protein_coding chr1:155279703 chr1:155279704 synonymous SNV . 0 22 hm5C_associated_SNPs_118825 0 0 1 0 1 FDPS chr1:155279756 5'GT 155279756 Upstream 53bp
chr2 189861175 189861175 1 + C T COAD 189861174 + 189861154 189861194 41 CCTCCTGGGCCATCTGGTCCCCGAGGTCAGCCTGGTGTCAT CCTCCTGGGCCATCTGGTCCCTGAGGTCAGCCTGGTGTCAT < 41bp 0.55506924624403 0.776903157963448 0.87378204 0.30694404 prediction 0.443667823438836 Functional Gain - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189861174 chr2:189861175 stopgain 0.999 1 22 hm5C_associated_SNPs_118826 0 0 0 0 2 COL3A1 chr2:189861124 3'AG 189861124 Downstream 52bp
chr2 189861175 189861175 1 + C T COAD 189861174 + 189861154 189861194 41 CCTCCTGGGCCATCTGGTCCCCGAGGTCAGCCTGGTGTCAT CCTCCTGGGCCATCTGGTCCCTGAGGTCAGCCTGGTGTCAT < 41bp 0.55506924624403 0.776903157963448 0.87378204 0.30694404 prediction 0.443667823438836 Functional Gain - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189861174 chr2:189861175 stopgain 0.999 1 22 hm5C_associated_SNPs_118826 0 0 0 0 2 COL3A1 chr2:189861222 5'GT 189861222 Upstream 48bp
chr5 76251641 76251641 1 + C T LIHC 76251640 + 76251620 76251660 41 TCTTCTTCCGAGTCCATGAACCAGGAAATGGATTCACATTA TCTTCTTCCGAGTCCATGAACTAGGAAATGGATTCACATTA < 41bp 0.474161745083291 0.721830908013052 0.25314784 0.05448982 prediction 0.443661816026105 Functional Gain - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76251640 chr5:76251641 nonsynonymous SNV 0.976 1 22 hm5C_associated_SNPs_118828 0 0 0 0 1 CRHBP chr5:76251688 5'GT 76251688 Upstream 48bp
chr20 2636321 2636321 1 + A G HNSC 2636318 + 2636298 2636338 41 TGTCTTTATCTGAATACCGCCAGAGCCTACACACTTACCTG TGTCTTTATCTGAATACCGCCAGGGCCTACACACTTACCTG < 41bp 0.480002538478218 0.721830642150478 0.7807417 0.8374727 prediction 0.443661284300957 Functional Gain - NOP56 ENSG00000101361 CDS Human protein_coding chr20:2636318 chr20:2636321 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_118829 0 0 1 0 2 NOP56 chr20:2636241 3'AG 2636241 Downstream 81bp
chr20 2636321 2636321 1 + A G HNSC 2636318 + 2636298 2636338 41 TGTCTTTATCTGAATACCGCCAGAGCCTACACACTTACCTG TGTCTTTATCTGAATACCGCCAGGGCCTACACACTTACCTG < 41bp 0.480002538478218 0.721830642150478 0.7807417 0.8374727 prediction 0.443661284300957 Functional Gain - NOP56 ENSG00000101361 CDS Human protein_coding chr20:2636318 chr20:2636321 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_118829 0 0 1 0 2 NOP56 chr20:2636392 5'GT 2636392 Upstream 72bp
chr12 119631578 119631578 1 + C T SKCM 119631577 + 119631557 119631597 41 GTCTGCTGATCATCGAAGCTCCCCAGGTCCCTCCTTACTCA GTCTGCTGATCATCGAAGCTCTCCAGGTCCCTCCTTACTCA < 41bp 0.613071262819595 0.834899395876867 0.08002889 0.9217452 prediction 0.443656266114545 Functional Gain - HSPB8 ENSG00000152137 CDS Human protein_coding chr12:119631577 chr12:119631578 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_118831 0 0 0 0 1 HSPB8 chr12:119631504 3'AG 119631504 Downstream 75bp
chr9 2635505 2635505 1 + T C STAD 2635502 + 2635482 2635522 41 TTCCAGTGCACAAATGGTCGCTGTATTACGCTGTTGTGGAA TTCCAGTGCACAAATGGTCGCTGCATTACGCTGTTGTGGAA < 41bp 0.516315253493925 0.738140656514963 0.018396705 0.010552615 prediction 0.443650806042076 Functional Gain - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2635502 chr9:2635505 synonymous SNV . 0 24 hm5C_associated_SNPs_118833 0 0 1 0 2 VLDLR chr9:2635453 3'AG 2635453 Downstream 53bp
chr9 2635505 2635505 1 + T C STAD 2635502 + 2635482 2635522 41 TTCCAGTGCACAAATGGTCGCTGTATTACGCTGTTGTGGAA TTCCAGTGCACAAATGGTCGCTGCATTACGCTGTTGTGGAA < 41bp 0.516315253493925 0.738140656514963 0.018396705 0.010552615 prediction 0.443650806042076 Functional Gain - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2635502 chr9:2635505 synonymous SNV . 0 24 hm5C_associated_SNPs_118833 0 0 1 0 2 VLDLR chr9:2635572 5'GT 2635572 Upstream 68bp
chr12 12247694 12247694 1 + C A rs61738409 12247693 + 12247673 12247713 41 CAGGTCCTAATGGGTGTGGACCCCAGGGGAGAATCAGAGGT CAGGTCCTAATGGGTGTGGACACCAGGGGAGAATCAGAGGT < 41bp 0.464229484860772 0.721824184678061 0.39224076 0.37680367 prediction 0.443648369356123 Functional Gain - BCL2L14 ENSG00000121380 CDS Human protein_coding chr12:12247693 chr12:12247694 nonsynonymous SNV 0.956 0 22 hm5C_associated_SNPs_118834 0 0 0 1 1 BCL2L14 chr12:12247598 3'AG 12247598 Downstream 97bp
chr8 86386612 86386612 1 + T C SKCM 86386610 + 86386590 86386630 41 TTGGGAAAGCTGTGCAGCAACCTGATGGACTGGCCGTTCTA TTGGGAAAGCTGTGCAGCAACCCGATGGACTGGCCGTTCTA < 41bp 0.641932798282994 0.863751735545045 0.37496537 0.51070666 prediction 0.443637874524102 Functional Gain - CA2 ENSG00000104267 CDS Human protein_coding chr8:86386610 chr8:86386612 stoploss . 0 23 hm5C_associated_SNPs_118837 0 0 1 0 2 CA2 chr8:86386553 3'AG 86386553 Downstream 60bp
chr8 86386612 86386612 1 + T C SKCM 86386610 + 86386590 86386630 41 TTGGGAAAGCTGTGCAGCAACCTGATGGACTGGCCGTTCTA TTGGGAAAGCTGTGCAGCAACCCGATGGACTGGCCGTTCTA < 41bp 0.641932798282994 0.863751735545045 0.37496537 0.51070666 prediction 0.443637874524102 Functional Gain - CA2 ENSG00000104267 CDS Human protein_coding chr8:86386610 chr8:86386612 stoploss . 0 23 hm5C_associated_SNPs_118837 0 0 1 0 2 CA2 chr8:86386645 5'GT 86386645 Upstream 34bp
chr3 183824010 183824010 1 + C A COAD 183824009 + 183823989 183824029 41 GCACGTGGCCACCACCCAGCCCCCACCCCTGCCTCGGTGGC GCACGTGGCCACCACCCAGCCACCACCCCTGCCTCGGTGGC < 41bp 0.590907523606736 0.812719233142821 0.05507502 0.05600664 prediction 0.44362341907217 Functional Gain - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183824009 chr3:183824010 synonymous SNV . 0 22 hm5C_associated_SNPs_118840 0 0 0 0 1 HTR3E chr3:183823916 3'AG 183823916 Downstream 95bp
chr1 178483876 178483876 1 + C T SKCM 178483875 + 178483855 178483895 41 TAAACAAGAAGGGCGGTTTACCAAAGCAGGAGTGACACAGG TAAACAAGAAGGGCGGTTTACTAAAGCAGGAGTGACACAGG < 41bp 0.470252875394918 0.721806960882054 0.5809313 0.39278185 prediction 0.443613921764108 Functional Gain - TEX35 ENSG00000240021 CDS Human protein_coding chr1:178483875 chr1:178483876 synonymous SNV . 0 22 hm5C_associated_SNPs_118842 0 0 0 0 2 TEX35 chr1:178483835 3'AG 178483835 Downstream 42bp
chr1 178483876 178483876 1 + C T SKCM 178483875 + 178483855 178483895 41 TAAACAAGAAGGGCGGTTTACCAAAGCAGGAGTGACACAGG TAAACAAGAAGGGCGGTTTACTAAAGCAGGAGTGACACAGG < 41bp 0.470252875394918 0.721806960882054 0.5809313 0.39278185 prediction 0.443613921764108 Functional Gain - TEX35 ENSG00000240021 CDS Human protein_coding chr1:178483875 chr1:178483876 synonymous SNV . 0 22 hm5C_associated_SNPs_118842 0 0 0 0 2 TEX35 chr1:178483903 5'GT 178483903 Upstream 28bp
chr6 56857308 56857308 1 + C A LUAD 56857307 + 56857287 56857327 41 AAAGAAAAACTAACAAACACCCGGAAAGAAAACAGCCGACT AAAGAAAAACTAACAAACACCAGGAAAGAAAACAGCCGACT < 41bp 0.591592374870487 0.81339757419127 0.30361545 0.6927256 prediction 0.443610398641566 Functional Gain - BEND6 ENSG00000151917 CDS Human protein_coding chr6:56857307 chr6:56857308 synonymous SNV . 0 22 hm5C_associated_SNPs_118843 0 0 0 0 1 BEND6 chr6:56857353 5'GT 56857353 Upstream 46bp
chr16 29816160 29816160 1 + C T SKCM 29816159 + 29816139 29816179 41 AGTCCCTGGATGCCCTAGAGCCTGAGGAGAAGGCTGAGGAC AGTCCCTGGATGCCCTAGAGCTTGAGGAGAAGGCTGAGGAC < 41bp 0.578474773591669 0.800271257978385 0.4162504 0.24092141 prediction 0.443592968773433 Functional Gain - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29816159 chr16:29816160 nonsynonymous SNV 0.521 0 22 hm5C_associated_SNPs_118847 0 0 1 1 1 KIF22 chr16:29816135 3'AG 29816135 Downstream 26bp
chr18 32395925 32395925 1 + C T UVM 32395924 + 32395904 32395944 41 CGCTTATGTCAGATCCTCCCCCGCAGTGTCTGGTCTGGTTG CGCTTATGTCAGATCCTCCCCTGCAGTGTCTGGTCTGGTTG < 41bp 0.505447646483332 0.727243578126558 0.07834056 0.20513299 prediction 0.443591863286453 Functional Gain - DTNA ENSG00000134769 CDS Human protein_coding chr18:32395924 chr18:32395925 nonsynonymous SNV 0.097 5 22 hm5C_associated_SNPs_118848 0 0 1 0 2 DTNA chr18:32395873 3'AG 32395873 Downstream 53bp
chr18 32395925 32395925 1 + C T UVM 32395924 + 32395904 32395944 41 CGCTTATGTCAGATCCTCCCCCGCAGTGTCTGGTCTGGTTG CGCTTATGTCAGATCCTCCCCTGCAGTGTCTGGTCTGGTTG < 41bp 0.505447646483332 0.727243578126558 0.07834056 0.20513299 prediction 0.443591863286453 Functional Gain - DTNA ENSG00000134769 CDS Human protein_coding chr18:32395924 chr18:32395925 nonsynonymous SNV 0.097 5 22 hm5C_associated_SNPs_118848 0 0 1 0 2 DTNA chr18:32395978 5'GT 32395978 Upstream 54bp
chr17 51901012 51901012 1 - G T LUAD 51901013 - 51900993 51901033 41 GCGATGTTCTTGCGGGGGCTCCAGGACTGAGATCTTGCTGC GCGATGTTCTTGCGGGGGCTCAAGGACTGAGATCTTGCTGC < 41bp 0.579065505188705 0.800861364170138 0.9134059 0.9318426 prediction 0.443591717962867 Functional Gain - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51901013 chr17:51901012 synonymous SNV . 0 22 hm5C_associated_SNPs_118849 0 0 0 0 1 KIF2B chr17:51901090 3'AG 51901090 Downstream 79bp
chr19 39592142 39592142 1 + C A LUAD 39592141 + 39592121 39592161 41 CGAGAGATGCCCTACACCAACCCGCGAGGGCCTGTCCACAT CGAGAGATGCCCTACACCAACACGCGAGGGCCTGTCCACAT < 41bp 0.454307496750401 0.721794430024951 0.05343291 0.106548786 prediction 0.443588860049903 Functional Gain - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39592141 chr19:39592142 nonsynonymous SNV 0.387 2 22 hm5C_associated_SNPs_118850 0 0 0 0 2 ACP7 chr19:39592106 3'AG 39592106 Downstream 37bp
chr19 39592142 39592142 1 + C A LUAD 39592141 + 39592121 39592161 41 CGAGAGATGCCCTACACCAACCCGCGAGGGCCTGTCCACAT CGAGAGATGCCCTACACCAACACGCGAGGGCCTGTCCACAT < 41bp 0.454307496750401 0.721794430024951 0.05343291 0.106548786 prediction 0.443588860049903 Functional Gain - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39592141 chr19:39592142 nonsynonymous SNV 0.387 2 22 hm5C_associated_SNPs_118850 0 0 0 0 2 ACP7 chr19:39592177 5'GT 39592177 Upstream 36bp
chr9 5231714 5231714 1 + C A LUAD 5231713 + 5231693 5231733 41 GGCTGCTGGAATCTGGACGTCCCAAAGGTGAGAGCCCTGGA GGCTGCTGGAATCTGGACGTCACAAAGGTGAGAGCCCTGGA < 41bp 0.577021310860293 0.798814589220848 0.42949134 0.6291839 prediction 0.443586556721109 Functional Gain - INSL4 ENSG00000120211 CDS Human protein_coding chr9:5231713 chr9:5231714 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_118851 0 0 0 0 1 INSL4 chr9:5231719 5'GT 5231719 Upstream 6bp
chr8 22370886 22370886 1 + T G KIRC 22370883 + 22370863 22370903 41 GATCCCTCAGAGGATTATGGCAATGAGAAGACCTTGGAGCA GATCCCTCAGAGGATTATGGCAAGGAGAAGACCTTGGAGCA < 41bp 0.31779302953584 0.721788887384606 0.41884306 0.9083332 prediction 0.443577774769212 Functional Gain - PPP3CC ENSG00000120910 CDS Human protein_coding chr8:22370883 chr8:22370886 nonsynonymous SNV 0.403 0 24 hm5C_associated_SNPs_118853 0 0 1 0 2 PPP3CC chr8:22370806 3'AG 22370806 Downstream 81bp
chr8 22370886 22370886 1 + T G KIRC 22370883 + 22370863 22370903 41 GATCCCTCAGAGGATTATGGCAATGAGAAGACCTTGGAGCA GATCCCTCAGAGGATTATGGCAAGGAGAAGACCTTGGAGCA < 41bp 0.31779302953584 0.721788887384606 0.41884306 0.9083332 prediction 0.443577774769212 Functional Gain - PPP3CC ENSG00000120910 CDS Human protein_coding chr8:22370883 chr8:22370886 nonsynonymous SNV 0.403 0 24 hm5C_associated_SNPs_118853 0 0 1 0 2 PPP3CC chr8:22370945 5'GT 22370945 Upstream 60bp
chr8 2048819 2048819 1 + C A LUAD 2048815 + 2048795 2048835 41 GAGAGTGGATCACTGTAAATCAGACGACAACAGCCAACCGT GAGAGTGGATCACTGTAAATCAGAAGACAACAGCCAACCGT < 41bp 0.317215105712641 0.721787792854721 0.48754326 0.82279575 prediction 0.443575585709442 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2048815 chr8:2048819 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_118854 0 0 0 0 1 MYOM2 chr8:2048844 5'GT 2048844 Upstream 26bp
chr10 5138713 5138713 1 + C T COAD 5138712 + 5138692 5138732 41 GAGCAGGTTGGACTGGCCATCCGAAGCAAGATTGCAGATGG GAGCAGGTTGGACTGGCCATCTGAAGCAAGATTGCAGATGG < 41bp 0.513145576052437 0.73492994578467 0.3634637 0.33029717 prediction 0.443568739464466 Functional Gain - AKR1C3 ENSG00000196139 CDS Human protein_coding chr10:5138712 chr10:5138713 stopgain 0.019 0 22 hm5C_associated_SNPs_118857 0 0 1 0 1 AKR1C3 chr10:5138769 5'GT 5138769 Upstream 57bp
chr1 43782918 43782918 1 + C T UCEC 43782917 + 43782897 43782937 41 TCAGGGACCTTGACACTTACCCGGCGGCCAAAACTGCAGCC TCAGGGACCTTGACACTTACCTGGCGGCCAAAACTGCAGCC < 41bp 0.535734979146846 0.757509494481062 0.91804886 0.85023946 prediction 0.443549030668431 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43782917 chr1:43782918 nonsynonymous SNV 0.987 3 22 hm5C_associated_SNPs_118859 0 0 0 0 1 TIE1 chr1:43782870 3'AG 43782870 Downstream 49bp
chr5 126771152 126771152 1 + C T SKCM 126771151 + 126771131 126771171 41 ACAGATCTTGTCAGTGTTACCCCGGTTGGATTGGCAGTGAC ACAGATCTTGTCAGTGTTACCTCGGTTGGATTGGCAGTGAC < 41bp 0.600619562452621 0.822393231399474 0.2735449 0.30298978 prediction 0.443547337893705 Functional Gain - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126771151 chr5:126771152 nonsynonymous SNV 0.754 4 22 hm5C_associated_SNPs_118860 0 0 0 0 1 MEGF10 chr5:126771181 5'GT 126771181 Upstream 30bp
chr19 50957537 50957537 1 + C A LUSC 50957533 + 50957513 50957553 41 CCCCTGCAGATGTCCCAGACCCCCCGGAGGCTGTGCGCATC CCCCTGCAGATGTCCCAGACCCCCAGGAGGCTGTGCGCATC < 41bp 0.290015812994635 0.72176648460787 0.06488693 0.07441914 prediction 0.443532969215739 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957533 chr19:50957537 nonsynonymous SNV 0.614 3 25 hm5C_associated_SNPs_118863 0 0 0 0 2 MYBPC2 chr19:50957522 3'AG 50957522 Downstream 16bp
chr19 50957537 50957537 1 + C A LUSC 50957533 + 50957513 50957553 41 CCCCTGCAGATGTCCCAGACCCCCCGGAGGCTGTGCGCATC CCCCTGCAGATGTCCCAGACCCCCAGGAGGCTGTGCGCATC < 41bp 0.290015812994635 0.72176648460787 0.06488693 0.07441914 prediction 0.443532969215739 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957533 chr19:50957537 nonsynonymous SNV 0.614 3 25 hm5C_associated_SNPs_118863 0 0 0 0 2 MYBPC2 chr19:50957626 5'GT 50957626 Upstream 90bp
chr22 38074613 38074613 1 + C T COAD 38074612 + 38074592 38074632 41 GGACGGCGGGGCCTGGGGGACCGAGCAGCGGGAGGCTGTCT GGACGGCGGGGCCTGGGGGACTGAGCAGCGGGAGGCTGTCT < 41bp 0.552700015627121 0.774466401639613 0.8279172 0.8733468 prediction 0.443532772024984 Functional Gain - LGALS1 ENSG00000100097 CDS Human protein_coding chr22:38074612 chr22:38074613 synonymous SNV . 0 22 hm5C_associated_SNPs_118864 0 0 1 0 1 LGALS1 chr22:38074661 5'GT 38074661 Upstream 49bp
chr1 43783321 43783321 1 + C A UCEC 43783317 + 43783297 43783337 41 GGGCATCACCCCAACATCATCAACCTCCTGGGGGCCTGTAA GGGCATCACCCCAACATCATCAACATCCTGGGGGCCTGTAA < 41bp 0.302977274443455 0.721762823480846 0.0483014 0.049342364 prediction 0.443525646961691 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43783317 chr1:43783321 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_118865 0 0 0 0 1 TIE1 chr1:43783345 5'GT 43783345 Upstream 25bp
chr11 44072904 44072904 1 + C T UCEC 44072903 + 44072883 44072923 41 AGCCTGCGGGAAGAAGTGGCCCGGTTCCTGACCTACTACTG AGCCTGCGGGAAGAAGTGGCCTGGTTCCTGACCTACTACTG < 41bp 0.539546766169161 0.761307652856401 0.77333605 0.7300738 prediction 0.443521773374479 Functional Gain - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44072903 chr11:44072904 nonsynonymous SNV 0.064 4 22 hm5C_associated_SNPs_118867 0 0 0 0 2 ACCSL chr11:44072885 3'AG 44072885 Downstream 20bp
chr11 44072904 44072904 1 + C T UCEC 44072903 + 44072883 44072923 41 AGCCTGCGGGAAGAAGTGGCCCGGTTCCTGACCTACTACTG AGCCTGCGGGAAGAAGTGGCCTGGTTCCTGACCTACTACTG < 41bp 0.539546766169161 0.761307652856401 0.77333605 0.7300738 prediction 0.443521773374479 Functional Gain - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44072903 chr11:44072904 nonsynonymous SNV 0.064 4 22 hm5C_associated_SNPs_118867 0 0 0 0 2 ACCSL chr11:44072954 5'GT 44072954 Upstream 51bp
chr17 2923879 2923879 1 + C T UCEC 2923878 + 2923858 2923898 41 TCAGAAGGCCAGGGCGACAGCCGGGCACGATGGTAACTGTT TCAGAAGGCCAGGGCGACAGCTGGGCACGATGGTAACTGTT < 41bp 0.486048437766156 0.72175624093863 0.85323954 0.30319893 prediction 0.443512481877259 Functional Gain - RAP1GAP2 ENSG00000132359 CDS Human protein_coding chr17:2923878 chr17:2923879 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_118870 0 0 0 0 1 RAP1GAP2 chr17:2923889 5'GT 2923889 Upstream 11bp
chr5 73069713 73069713 1 + C A UCEC 73069709 + 73069689 73069729 41 ACAGAGAATCTCTTCTACACCTGGCTATGAGATGGGGCCTG ACAGAGAATCTCTTCTACACCTGGATATGAGATGGGGCCTG < 41bp 0.319268703768491 0.721745216214567 0.019125223 0.16742676 prediction 0.443490432429135 Functional Gain - ARHGEF28 ENSG00000214944 CDS Human protein_coding chr5:73069709 chr5:73069713 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_118872 0 0 0 0 1 ARHGEF28 chr5:73069680 3'AG 73069680 Downstream 34bp
chr7 140402711 140402711 1 + C T SKCM 140402710 + 140402690 140402730 41 GCCCCGGTATAGACAGTTCCCCCAGCTGACCAGATCCCAGG GCCCCGGTATAGACAGTTCCCTCAGCTGACCAGATCCCAGG < 41bp 0.580166474292884 0.801902314228158 0.16732973 0.062562495 prediction 0.443471679870549 Functional Gain - NDUFB2 ENSG00000090266 CDS Human protein_coding chr7:140402710 chr7:140402711 synonymous SNV . 0 22 hm5C_associated_SNPs_118875 0 0 1 0 2 NDUFB2 chr7:140402666 3'AG 140402666 Downstream 46bp
chr7 140402711 140402711 1 + C T SKCM 140402710 + 140402690 140402730 41 GCCCCGGTATAGACAGTTCCCCCAGCTGACCAGATCCCAGG GCCCCGGTATAGACAGTTCCCTCAGCTGACCAGATCCCAGG < 41bp 0.580166474292884 0.801902314228158 0.16732973 0.062562495 prediction 0.443471679870549 Functional Gain - NDUFB2 ENSG00000090266 CDS Human protein_coding chr7:140402710 chr7:140402711 synonymous SNV . 0 22 hm5C_associated_SNPs_118875 0 0 1 0 2 NDUFB2 chr7:140402810 5'GT 140402810 Upstream 100bp
chr11 65409819 65409819 1 + A G COAD 65409816 + 65409796 65409836 41 GCAGCGGAGGGGGCACCCTGCACAGCTACCGCGTCATCGTG GCAGCGGAGGGGGCACCCTGCACGGCTACCGCGTCATCGTG < 41bp 0.578945624071758 0.800677724340802 0.062121987 0.290114 prediction 0.443464200538087 Functional Gain - SIPA1 ENSG00000213445 CDS Human protein_coding chr11:65409816 chr11:65409819 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_118876 0 0 1 0 2 SIPA1 chr11:65409721 3'AG 65409721 Downstream 99bp
chr11 65409819 65409819 1 + A G COAD 65409816 + 65409796 65409836 41 GCAGCGGAGGGGGCACCCTGCACAGCTACCGCGTCATCGTG GCAGCGGAGGGGGCACCCTGCACGGCTACCGCGTCATCGTG < 41bp 0.578945624071758 0.800677724340802 0.062121987 0.290114 prediction 0.443464200538087 Functional Gain - SIPA1 ENSG00000213445 CDS Human protein_coding chr11:65409816 chr11:65409819 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_118876 0 0 1 0 2 SIPA1 chr11:65409848 5'GT 65409848 Upstream 30bp
chr7 2623911 2623911 1 + C T rs61757091 2623910 + 2623890 2623930 41 CTTGGCAAGTTCTGAAACCACCGGAAAGAAGTATGATGGCC CTTGGCAAGTTCTGAAACCACTGGAAAGAAGTATGATGGCC < 41bp 0.569744608540283 0.791475445948562 0.35275635 0.3667416 prediction 0.443461674816558 Functional Gain - IQCE ENSG00000106012 CDS Human protein_coding chr7:2623910 chr7:2623911 synonymous SNV . 0 22 hm5C_associated_SNPs_118877 0 0 0 0 2 IQCE chr7:2623870 3'AG 2623870 Downstream 42bp
chr7 2623911 2623911 1 + C T rs61757091 2623910 + 2623890 2623930 41 CTTGGCAAGTTCTGAAACCACCGGAAAGAAGTATGATGGCC CTTGGCAAGTTCTGAAACCACTGGAAAGAAGTATGATGGCC < 41bp 0.569744608540283 0.791475445948562 0.35275635 0.3667416 prediction 0.443461674816558 Functional Gain - IQCE ENSG00000106012 CDS Human protein_coding chr7:2623910 chr7:2623911 synonymous SNV . 0 22 hm5C_associated_SNPs_118877 0 0 0 0 2 IQCE chr7:2623919 5'GT 2623919 Upstream 9bp
chr1 167666384 167666384 1 + C T UCEC 167666383 + 167666363 167666403 41 CGCCCTCCCTCCAGGCGATTCCGAAGGTCACAGTCAGACTG CGCCCTCCCTCCAGGCGATTCTGAAGGTCACAGTCAGACTG < 41bp 0.606538677949085 0.828264346958153 0.92341137 0.3217125 prediction 0.443451338018136 Functional Gain - RCSD1 ENSG00000198771 CDS Human protein_coding chr1:167666383 chr1:167666384 stopgain 0.999 1 22 hm5C_associated_SNPs_118879 0 0 0 0 1 RCSD1 chr1:167666336 3'AG 167666336 Downstream 49bp
chr16 53514570 53514570 1 + A G LIHC 53514567 + 53514547 53514587 41 CCTCCCACACCTACTCGCCTCACAGGTGCCAACAGTGACAT CCTCCCACACCTACTCGCCTCACGGGTGCCAACAGTGACAT < 41bp 0.486015685849437 0.721725437509595 0.0995554 0.34051484 prediction 0.44345087501919 Functional Gain - RBL2 ENSG00000103479 CDS Human protein_coding chr16:53514567 chr16:53514570 synonymous SNV . 0 24 hm5C_associated_SNPs_118880 0 0 1 0 1 RBL2 chr16:53514479 3'AG 53514479 Downstream 92bp
chr2 71209176 71209176 1 + T C rs36123544 71209174 + 71209154 71209194 41 AACGTCCATGCCCAAGATGCCATGGGCTACAAACCCATTGA AACGTCCATGCCCAAGATGCCACGGGCTACAAACCCATTGA < 41bp 0.45721482277382 0.721722357566774 0.605536 0.6717268 prediction 0.443444715133549 Functional Gain - ANKRD53 ENSG00000144031 CDS Human protein_coding chr2:71209174 chr2:71209176 nonsynonymous SNV 0.815 0 23 hm5C_associated_SNPs_118881 0 0 0 0 1 ANKRD53 chr2:71209230 5'GT 71209230 Upstream 55bp
chr2 85662803 85662803 1 + C A UCEC 85662802 + 85662782 85662822 41 TCCACAGGATGGGGCCTATACCGTGCGCCCCAGCTCAGGGC TCCACAGGATGGGGCCTATACAGTGCGCCCCAGCTCAGGGC < 41bp 0.596366886170371 0.818077362384181 0.25969464 0.06044081 prediction 0.44342095242762 Functional Gain - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85662802 chr2:85662803 synonymous SNV . 0 22 hm5C_associated_SNPs_118884 0 0 1 0 1 SH2D6 chr2:85662789 3'AG 85662789 Downstream 15bp
chr1 26146884 26146884 1 + C G rs984412 26146880 + 26146860 26146900 41 AAGGGCCGCTGGGCAGGCGGCGAGCACTTGGCCGACCTTGG AAGGGCCGCTGGGCAGGCGGCGAGGACTTGGCCGACCTTGG < 41bp 0.636062913427608 0.857765731852504 0.2644848 0.60336745 prediction 0.443405636849792 Functional Gain - LOC646471 ENSG00000223474 CDS Human other chr1:26146880 chr1:26146884 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_118885 0 0 1 0 1 LOC646471 chr1:26146905 5'GT 26146905 Upstream 22bp
chr11 6415502 6415502 1 + C T rs147258619 6415501 + 6415481 6415521 41 CTGGACCATGAGACCTACATCCTGAATCTGACCCAGGCAAA CTGGACCATGAGACCTACATCTTGAATCTGACCCAGGCAAA < 41bp 0.476035520848778 0.721701671221466 0.2341063 0.20314682 prediction 0.443403342442932 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6415501 chr11:6415502 synonymous SNV . 0 22 hm5C_associated_SNPs_118886 1 0 0 0 2 SMPD1 chr11:6415408 3'AG 6415408 Downstream 95bp
chr11 6415502 6415502 1 + C T rs147258619 6415501 + 6415481 6415521 41 CTGGACCATGAGACCTACATCCTGAATCTGACCCAGGCAAA CTGGACCATGAGACCTACATCTTGAATCTGACCCAGGCAAA < 41bp 0.476035520848778 0.721701671221466 0.2341063 0.20314682 prediction 0.443403342442932 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6415501 chr11:6415502 synonymous SNV . 0 22 hm5C_associated_SNPs_118886 1 0 0 0 2 SMPD1 chr11:6415428 3'AG 6415428 Downstream 75bp
chr5 55075857 55075857 1 + C T UCEC 55075856 + 55075836 55075876 41 AGAGGTGGAAGAGGTAGTTTCCGAGGTTGCCGTGGAGGATT AGAGGTGGAAGAGGTAGTTTCTGAGGTTGCCGTGGAGGATT < 41bp 0.536366030016225 0.758066632791518 0.899488 0.70540833 prediction 0.443401205550584 Functional Gain - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55075856 chr5:55075857 stopgain 0.980 1 22 hm5C_associated_SNPs_118888 0 0 0 0 2 DDX4 chr5:55075792 3'AG 55075792 Downstream 66bp
chr5 55075857 55075857 1 + C T UCEC 55075856 + 55075836 55075876 41 AGAGGTGGAAGAGGTAGTTTCCGAGGTTGCCGTGGAGGATT AGAGGTGGAAGAGGTAGTTTCTGAGGTTGCCGTGGAGGATT < 41bp 0.536366030016225 0.758066632791518 0.899488 0.70540833 prediction 0.443401205550584 Functional Gain - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55075856 chr5:55075857 stopgain 0.980 1 22 hm5C_associated_SNPs_118888 0 0 0 0 2 DDX4 chr5:55075893 5'GT 55075893 Upstream 37bp
chr7 44150655 44150655 1 + C A LUAD 44150654 + 44150634 44150674 41 GGTGCTGGGGTGCTCTGTGGCCCGTGAGTGTGGAGGGCTGG GGTGCTGGGGTGCTCTGTGGCACGTGAGTGTGGAGGGCTGG < 41bp 0.455561160957569 0.721699354653446 0.10413322 0.37956193 prediction 0.443398709306892 Functional Gain - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44150654 chr7:44150655 synonymous SNV . 0 22 hm5C_associated_SNPs_118890 0 0 0 0 1 AEBP1 chr7:44150656 5'GT 44150656 Upstream 2bp
chr6 160227020 160227020 1 + C T UCEC 160227019 + 160226999 160227039 41 ATGCGCCCATTTTCAGCTCTCCGGATAAAGACCAAATCAAG ATGCGCCCATTTTCAGCTCTCTGGATAAAGACCAAATCAAG < 41bp 0.570353682004645 0.792049089883542 0.815773 0.24494192 prediction 0.443390815757793 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160227019 chr6:160227020 nonsynonymous SNV 0.429 0 22 hm5C_associated_SNPs_118892 0 0 1 0 2 PNLDC1 chr6:160227015 3'AG 160227015 Downstream 6bp
chr6 160227020 160227020 1 + C T UCEC 160227019 + 160226999 160227039 41 ATGCGCCCATTTTCAGCTCTCCGGATAAAGACCAAATCAAG ATGCGCCCATTTTCAGCTCTCTGGATAAAGACCAAATCAAG < 41bp 0.570353682004645 0.792049089883542 0.815773 0.24494192 prediction 0.443390815757793 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160227019 chr6:160227020 nonsynonymous SNV 0.429 0 22 hm5C_associated_SNPs_118892 0 0 1 0 2 PNLDC1 chr6:160227115 5'GT 160227115 Upstream 96bp
chr6 125573194 125573194 1 + A G rs3799734 125573191 + 125573171 125573211 41 TCACTCCATCGGGTAAGCGCCACAGGGCTGCGTGTGGGGCT TCACTCCATCGGGTAAGCGCCACGGGGCTGCGTGTGGGGCT < 41bp 0.510513270460126 0.732204967486677 0.22076797 0.3959027 prediction 0.443383394053102 Functional Gain - TPD52L1 ENSG00000111906;ENSG00000111907 intronic Human protein_coding chr6:125573191 chr6:125573194 . . 0 24 hm5C_associated_SNPs_118893 0 0 0 0 1 TPD52L1 chr6:125573168 3'AG 125573168 Downstream 27bp
chr7 150417441 150417441 1 + C T BRCA 150417440 + 150417420 150417460 41 CCCGGACCCCACGCGCTGCTCCTGGTGACCCAGTTGGGTCG CCCGGACCCCACGCGCTGCTCTTGGTGACCCAGTTGGGTCG < 41bp 0.58044496858242 0.80213571791382 0.6397943 0.19097915 prediction 0.4433814986628 Functional Gain - GIMAP1;GIMAP1-GIMAP5 ENSG00000213203 CDS Human protein_coding chr7:150417440 chr7:150417441 synonymous SNV . 0 22 hm5C_associated_SNPs_118894 0 0 0 0 1 GIMAP1;GIMAP1-GIMAP5 chr7:150417494 5'GT 150417494 Upstream 54bp
chr19 15648456 15648456 1 + A G rs16980531 15648453 + 15648433 15648473 41 CTTACATGAAGATCTTCAACCAGAGCGCTGACATTATGCAT CTTACATGAAGATCTTCAACCAGGGCGCTGACATTATGCAT < 41bp 0.47597013893798 0.721676140810796 0.6697244 0.8994559 prediction 0.443352281621592 Functional Gain - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15648453 chr19:15648456 nonsynonymous SNV 0.260 1 24 hm5C_associated_SNPs_118899 0 0 0 0 1 CYP4F22 chr19:15648473 5'GT 15648473 Upstream 18bp
chr3 153220267 153220267 1 + T C LAML 153220265 + 153220245 153220285 41 TATCAAACAGATGCCAGTCACTTGTAACATCTGCCCTACCA TATCAAACAGATGCCAGTCACTCGTAACATCTGCCCTACCA < 41bp 0.580203006387656 0.801873556645402 0.18120068 0.19695294 prediction 0.443341100515492 Functional Gain - C3orf79 ENSG00000237787 CDS Human lincRNA chr3:153220265 chr3:153220267 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_118901 0 0 0 0 1 C3orf79 chr3:153220192 3'AG 153220192 Downstream 76bp
chr6 52052498 52052498 1 + C T UCEC 52052497 + 52052477 52052517 41 ATTCTGAGGACAAGAACTTCCCCCGGACTGTGATGGTCAAC ATTCTGAGGACAAGAACTTCCTCCGGACTGTGATGGTCAAC < 41bp 0.586910412510346 0.808580316301516 0.044279307 0.04382196 prediction 0.443339807582339 Functional Gain - IL17A ENSG00000112115 CDS Human protein_coding chr6:52052497 chr6:52052498 nonsynonymous SNV 0.560 0 22 hm5C_associated_SNPs_118902 0 0 0 0 1 IL17A chr6:52052401 3'AG 52052401 Downstream 98bp
chr15 63881159 63881159 1 + C T UCEC 63881158 + 63881138 63881178 41 TGTAGCCTGAGAACAGTGGCCCGGAGAGCTGCCTGTATGAC TGTAGCCTGAGAACAGTGGCCTGGAGAGCTGCCTGTATGAC < 41bp 0.595178631111681 0.816840146120551 0.30447596 0.24128777 prediction 0.443323030017739 Functional Gain - USP3 ENSG00000140455 CDS Human protein_coding chr15:63881158 chr15:63881159 nonsynonymous SNV 0.181 3 22 hm5C_associated_SNPs_118905 0 0 1 0 2 USP3 chr15:63881143 3'AG 63881143 Downstream 17bp
chr15 63881159 63881159 1 + C T UCEC 63881158 + 63881138 63881178 41 TGTAGCCTGAGAACAGTGGCCCGGAGAGCTGCCTGTATGAC TGTAGCCTGAGAACAGTGGCCTGGAGAGCTGCCTGTATGAC < 41bp 0.595178631111681 0.816840146120551 0.30447596 0.24128777 prediction 0.443323030017739 Functional Gain - USP3 ENSG00000140455 CDS Human protein_coding chr15:63881158 chr15:63881159 nonsynonymous SNV 0.181 3 22 hm5C_associated_SNPs_118905 0 0 1 0 2 USP3 chr15:63881210 5'GT 63881210 Upstream 52bp
chr22 51237124 51237124 1 + C T rs570201540 51237123 + 51237103 51237143 41 AGCTCCTGCTCATCCTAAAGCCGAAGCCAAAGCGAAGGCTT AGCTCCTGCTCATCCTAAAGCTGAAGCCAAAGCGAAGGCTT < 41bp 0.507119215375618 0.7287784133446 0.11157128 0.06583637 prediction 0.443318395937964 Functional Gain - RPL23AP82 ENSG00000184319 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:51237123 chr22:51237124 . . 0 22 hm5C_associated_SNPs_118906 0 0 0 0 1 RPL23AP82 chr22:51237083 3'AG 51237083 Downstream 42bp
chr1 61872334 61872334 1 + C G SKCM 61872333 + 61872313 61872353 41 TGGCCAGGCCTGTGCCTCTGCCGGTGCCAGACACAAAGCCT TGGCCAGGCCTGTGCCTCTGCGGGTGCCAGACACAAAGCCT < 41bp 0.417188004328795 0.721658966315548 0.7044714 0.8725936 prediction 0.443317932631095 Functional Gain - NFIA ENSG00000162599 CDS Human protein_coding chr1:61872333 chr1:61872334 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_118907 0 0 1 0 1 NFIA chr1:61872399 5'GT 61872399 Upstream 66bp
chr3 119469801 119469801 1 + A G SKCM 119469798 + 119469778 119469818 41 GCACAGTGAGGAACGCACAGCGGAAACATATTCTTGCAGCC GCACAGTGAGGAACGCACAGCGGGAACATATTCTTGCAGCC < 41bp 0.496788116914317 0.721658922560065 0.6094806 0.73979664 prediction 0.443317845120129 Functional Gain - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119469798 chr3:119469801 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_118908 0 0 0 0 1 MAATS1 chr3:119469784 3'AG 119469784 Downstream 18bp
chr4 129770210 129770210 1 + C A THCA 129770209 + 129770189 129770229 41 GTCATCAGGCTCTGAGCCTCCCGAGTTGGGCTATGTGGACA GTCATCAGGCTCTGAGCCTCCAGAGTTGGGCTATGTGGACA < 41bp 0.45874777214188 0.721651459403594 0.32180652 0.6011177 prediction 0.443302918807188 Functional Gain - JADE1 ENSG00000077684 CDS Human protein_coding chr4:129770209 chr4:129770210 synonymous SNV . 0 22 hm5C_associated_SNPs_118910 0 0 1 0 1 JADE1 chr4:129770171 3'AG 129770171 Downstream 40bp
chr2 241500186 241500186 1 - G C rs553554660 241500190 - 241500170 241500210 41 CCGCGCCCGCGGCTCGCGCGCTCCCGAGGAAGAGTGAGGGC CCGCGCCCGCGGCTCGCGCGCTCCGGAGGAAGAGTGAGGGC < 41bp 0.62651500780304 0.848162493873744 0.20195973 0.35152304 prediction 0.443294972141408 Functional Gain - ANKMY1;DUSP28 ENSG00000144504;ENSG00000188542 CDS Human other chr2:241500190 chr2:241500186 nonsynonymous SNV 0.048 4 25 hm5C_associated_SNPs_118912 0 0 0 0 1 ANKMY1;DUSP28 chr2:241500148 5'GT 241500148 Upstream 39bp
chr14 103570385 103570385 1 + T C rs572934887 103570383 + 103570363 103570403 41 GAGAGCGACTACACCAGCTTCCTGGAGGTCAGGCCGGGCGG GAGAGCGACTACACCAGCTTCCCGGAGGTCAGGCCGGGCGG < 41bp 0.490171707019219 0.721640681788818 0.3433131 0.9100211 prediction 0.443281363577636 Functional Gain - EXOC3L4 ENSG00000205436 CDS Human protein_coding chr14:103570383 chr14:103570385 nonsynonymous SNV 0.861 1 23 hm5C_associated_SNPs_118913 0 0 1 0 1 EXOC3L4 chr14:103570389 5'GT 103570389 Upstream 5bp
chr3 51426377 51426377 1 + C T SKCM 51426376 + 51426356 51426396 41 ACAGTGGACCTGAAGAAGCTCCGAGTTAAAGAGCTGAAGAA ACAGTGGACCTGAAGAAGCTCTGAGTTAAAGAGCTGAAGAA < 41bp 0.523448258937767 0.745087222864891 0.10023394 0.042424858 prediction 0.443277927854248 Functional Gain - MANF ENSG00000145050 CDS Human protein_coding chr3:51426376 chr3:51426377 stopgain 0.980 1 22 hm5C_associated_SNPs_118914 0 0 1 0 1 MANF chr3:51426336 3'AG 51426336 Downstream 42bp
chrX 135638619 135638619 1 + A G LIHC 135638616 + 135638596 135638636 41 AACTTCTCCTTTAGCTCTTTCAGAGTTAGAGACACCTGGGA AACTTCTCCTTTAGCTCTTTCAGGGTTAGAGACACCTGGGA < 41bp 0.533987676472859 0.755625856121965 0.805755 0.91571414 prediction 0.443276359298213 Functional Gain - VGLL1 ENSG00000102243 CDS Human protein_coding chrX:135638616 chrX:135638619 nonsynonymous SNV 0.043 1 24 hm5C_associated_SNPs_118915 0 0 0 0 1 VGLL1 chrX:135638610 3'AG 135638610 Downstream 10bp
chr9 136270388 136270388 1 + C T COAD 136270387 + 136270367 136270407 41 CACCTGCAGAGGAGATCCTGCCGGAGCTGGTGTCCAGTAGT CACCTGCAGAGGAGATCCTGCTGGAGCTGGTGTCCAGTAGT < 41bp 0.495956902719411 0.721635699930507 0.7215948 0.3325351 prediction 0.443271399861014 Functional Gain - STKLD1 ENSG00000198870 CDS Human protein_coding chr9:136270387 chr9:136270388 nonsynonymous SNV 0.542 1 22 hm5C_associated_SNPs_118916 0 0 0 0 1 STKLD1 chr9:136270376 3'AG 136270376 Downstream 13bp
chr7 143000953 143000953 1 + C T rs372837731 143000952 + 143000932 143000972 41 TGGGTGCGAGGAGAGTGATGCCGGTAAAGAAAAGTTGCCGA TGGGTGCGAGGAGAGTGATGCTGGTAAAGAAAAGTTGCCGA < 41bp 0.473500088862564 0.721633344676685 0.83940744 0.83846104 prediction 0.443266689353371 Functional Gain - CASP2 ENSG00000106144 CDS Human protein_coding chr7:143000952 chr7:143000953 synonymous SNV . 0 22 hm5C_associated_SNPs_118917 0 0 1 0 2 CASP2 chr7:143000877 3'AG 143000877 Downstream 77bp
chr7 143000953 143000953 1 + C T rs372837731 143000952 + 143000932 143000972 41 TGGGTGCGAGGAGAGTGATGCCGGTAAAGAAAAGTTGCCGA TGGGTGCGAGGAGAGTGATGCTGGTAAAGAAAAGTTGCCGA < 41bp 0.473500088862564 0.721633344676685 0.83940744 0.83846104 prediction 0.443266689353371 Functional Gain - CASP2 ENSG00000106144 CDS Human protein_coding chr7:143000952 chr7:143000953 synonymous SNV . 0 22 hm5C_associated_SNPs_118917 0 0 1 0 2 CASP2 chr7:143001026 5'GT 143001026 Upstream 74bp
chr14 89075691 89075691 1 + C T UCEC 89075690 + 89075670 89075710 41 ATGATGCAAAGTGTACTAAACCAGATTGTCCCTTCACTCAT ATGATGCAAAGTGTACTAAACTAGATTGTCCCTTCACTCAT < 41bp 0.583153379492553 0.804784008862706 0.119258285 0.10617247 prediction 0.443261258740305 Functional Gain - ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89075690 chr14:89075691 nonsynonymous SNV 0.992 1 22 hm5C_associated_SNPs_118918 0 0 1 0 2 ZC3H14 chr14:89075611 3'AG 89075611 Downstream 81bp
chr14 89075691 89075691 1 + C T UCEC 89075690 + 89075670 89075710 41 ATGATGCAAAGTGTACTAAACCAGATTGTCCCTTCACTCAT ATGATGCAAAGTGTACTAAACTAGATTGTCCCTTCACTCAT < 41bp 0.583153379492553 0.804784008862706 0.119258285 0.10617247 prediction 0.443261258740305 Functional Gain - ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89075690 chr14:89075691 nonsynonymous SNV 0.992 1 22 hm5C_associated_SNPs_118918 0 0 1 0 2 ZC3H14 chr14:89075747 5'GT 89075747 Upstream 57bp
chr17 33504628 33504628 1 + C T UCEC 33504627 + 33504607 33504647 41 TCTGGGCGGAGTGACAAACTCCGGTGAGTGTGGTGAGTGTG TCTGGGCGGAGTGACAAACTCTGGTGAGTGTGGTGAGTGTG < 41bp 0.547412318579353 0.769026961462089 0.84080243 0.6630678 prediction 0.443229285765473 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33504627 chr17:33504628 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_118924 0 0 0 0 1 UNC45B chr17:33504629 5'GT 33504629 Upstream 2bp
chr2 29366660 29366660 1 + A G LIHC 29366657 + 29366637 29366677 41 GGCTGACGCCGCAGCCACTGCTAAGGAAATCAAGCAGATGC GGCTGACGCCGCAGCCACTGCTAGGGAAATCAAGCAGATGC < 41bp 0.563413269439283 0.785020013826316 0.27418947 0.607308 prediction 0.443213488774067 Functional Gain - CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29366657 chr2:29366660 nonsynonymous SNV 0.372 3 24 hm5C_associated_SNPs_118926 0 0 0 0 1 CLIP4 chr2:29366575 3'AG 29366575 Downstream 86bp
chr4 100532530 100532530 1 + T C LUAD 100532527 + 100532507 100532547 41 CTACTTACAGCCTAGACATTCTCTACTCGGGTTCTGGCATT CTACTTACAGCCTAGACATTCTCCACTCGGGTTCTGGCATT < 41bp 0.55093224323299 0.772538640864038 0.2589569 0.9373071 prediction 0.443212795262095 Functional Gain - MTTP ENSG00000138823 CDS Human protein_coding chr4:100532527 chr4:100532530 nonsynonymous SNV 0.959 4 24 hm5C_associated_SNPs_118927 0 0 0 0 2 MTTP chr4:100532489 3'AG 100532489 Downstream 42bp
chr4 100532530 100532530 1 + T C LUAD 100532527 + 100532507 100532547 41 CTACTTACAGCCTAGACATTCTCTACTCGGGTTCTGGCATT CTACTTACAGCCTAGACATTCTCCACTCGGGTTCTGGCATT < 41bp 0.55093224323299 0.772538640864038 0.2589569 0.9373071 prediction 0.443212795262095 Functional Gain - MTTP ENSG00000138823 CDS Human protein_coding chr4:100532527 chr4:100532530 nonsynonymous SNV 0.959 4 24 hm5C_associated_SNPs_118927 0 0 0 0 2 MTTP chr4:100532610 5'GT 100532610 Upstream 81bp
chr1 16371021 16371021 1 + T C UCEC 16371019 + 16370999 16371039 41 TGTGGGGCTGCGTGAAGGCTCCTCAGGGAACCCTGTGACTC TGTGGGGCTGCGTGAAGGCTCCCCAGGGAACCCTGTGACTC < 41bp 0.451324782809471 0.721604177846488 0.17721769 0.14808992 prediction 0.443208355692976 Functional Gain - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16371019 chr1:16371021 nonsynonymous SNV 0.953 1 23 hm5C_associated_SNPs_118928 0 0 0 0 2 CLCNKB chr1:16370981 3'AG 16370981 Downstream 41bp
chr1 16371021 16371021 1 + T C UCEC 16371019 + 16370999 16371039 41 TGTGGGGCTGCGTGAAGGCTCCTCAGGGAACCCTGTGACTC TGTGGGGCTGCGTGAAGGCTCCCCAGGGAACCCTGTGACTC < 41bp 0.451324782809471 0.721604177846488 0.17721769 0.14808992 prediction 0.443208355692976 Functional Gain - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16371019 chr1:16371021 nonsynonymous SNV 0.953 1 23 hm5C_associated_SNPs_118928 0 0 0 0 2 CLCNKB chr1:16371087 5'GT 16371087 Upstream 67bp
chr20 55012584 55012584 1 + C T SKCM 55012583 + 55012563 55012603 41 CTGCCCAAGTCTATGAATTCCCCGACCCTCCCACCAGTGCC CTGCCCAAGTCTATGAATTCCTCGACCCTCCCACCAGTGCC < 41bp 0.608539266589002 0.830142039694972 0.055959523 0.24672645 prediction 0.443205546211942 Functional Gain - CASS4 ENSG00000087589 CDS Human protein_coding chr20:55012583 chr20:55012584 nonsynonymous SNV 0.445 4 22 hm5C_associated_SNPs_118929 0 0 0 0 1 CASS4 chr20:55012642 5'GT 55012642 Upstream 59bp
chr2 15769797 15769797 1 + T C rs80285206 15769794 + 15769774 15769814 41 AGACTCAAGGAAGATGGAGGCTGTACCATATGGTACAACGA AGACTCAAGGAAGATGGAGGCTGCACCATATGGTACAACGA < 41bp 0.492268821708111 0.721600160629991 0.1499047 0.10544565 prediction 0.443200321259983 Functional Gain - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15769794 chr2:15769797 synonymous SNV . 0 24 hm5C_associated_SNPs_118931 0 0 1 0 2 DDX1 chr2:15769726 3'AG 15769726 Downstream 72bp
chr2 15769797 15769797 1 + T C rs80285206 15769794 + 15769774 15769814 41 AGACTCAAGGAAGATGGAGGCTGTACCATATGGTACAACGA AGACTCAAGGAAGATGGAGGCTGCACCATATGGTACAACGA < 41bp 0.492268821708111 0.721600160629991 0.1499047 0.10544565 prediction 0.443200321259983 Functional Gain - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15769794 chr2:15769797 synonymous SNV . 0 24 hm5C_associated_SNPs_118931 0 0 1 0 2 DDX1 chr2:15769821 5'GT 15769821 Upstream 25bp
chr1 1454310 1454310 1 + A G STAD 1454307 + 1454287 1454327 41 CGGCTTCTTCTCAGCAACTTCTCAATGAGGAGAATTTACGG CGGCTTCTTCTCAGCAACTTCTCGATGAGGAGAATTTACGG < 41bp 0.54589719100796 0.767493877779559 0.6295958 0.9020655 prediction 0.443193373543198 Functional Gain - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1454307 chr1:1454310 nonsynonymous SNV 0.957 2 24 hm5C_associated_SNPs_118933 0 0 0 0 2 ATAD3A chr1:1454301 3'AG 1454301 Downstream 10bp
chr1 1454310 1454310 1 + A G STAD 1454307 + 1454287 1454327 41 CGGCTTCTTCTCAGCAACTTCTCAATGAGGAGAATTTACGG CGGCTTCTTCTCAGCAACTTCTCGATGAGGAGAATTTACGG < 41bp 0.54589719100796 0.767493877779559 0.6295958 0.9020655 prediction 0.443193373543198 Functional Gain - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1454307 chr1:1454310 nonsynonymous SNV 0.957 2 24 hm5C_associated_SNPs_118933 0 0 0 0 2 ATAD3A chr1:1454370 5'GT 1454370 Upstream 61bp
chr19 15164439 15164439 1 + C T UCEC 15164438 + 15164418 15164458 41 CATGAAAAGAGACCCCACTGCCGAGGTATTGGGGTGCCTAC CATGAAAAGAGACCCCACTGCTGAGGTATTGGGGTGCCTAC < 41bp 0.488905564803106 0.721587874529616 0.91058785 0.7840009 prediction 0.443175749059233 Functional Gain - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15164438 chr19:15164439 synonymous SNV . 0 22 hm5C_associated_SNPs_118941 0 0 0 0 1 CASP14 chr19:15164442 5'GT 15164442 Upstream 4bp
chr2 190340017 190340017 1 + C A rs535803074 190340016 + 190339996 190340036 41 AGATGAAGAAAATGATTTTACCGAAAAAGTCCAGGATACAA AGATGAAGAAAATGATTTTACAGAAAAAGTCCAGGATACAA < 41bp 0.474441334090303 0.721586540279069 0.12534013 0.08862379 prediction 0.443173080558139 Functional Gain - WDR75 ENSG00000115368 CDS Human protein_coding chr2:190340016 chr2:190340017 synonymous SNV . 0 22 hm5C_associated_SNPs_118942 0 0 1 0 1 WDR75 chr2:190339939 3'AG 190339939 Downstream 79bp
chr16 814909 814909 1 + C T LUAD 814908 + 814888 814928 41 CAGCACCCTCTCTTCACAGCCCAGATGCGTTCTCGGGGCCC CAGCACCCTCTCTTCACAGCCTAGATGCGTTCTCGGGGCCC < 41bp 0.492231860146709 0.721579927761224 0.24623677 0.26873365 prediction 0.443159855522449 Functional Gain - MSLN ENSG00000102854 CDS Human protein_coding chr16:814908 chr16:814909 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_118943 0 0 0 0 1 MSLN chr16:814907 3'AG 814907 Downstream 3bp
chr2 1440078 1440078 1 + C A rs61758083 1440074 + 1440054 1440094 41 TTGCAAACATGTCTGGATGTCTCCCTTACATGCTGCCCCCA TTGCAAACATGTCTGGATGTCTCCATTACATGCTGCCCCCA < 41bp 0.290398094509104 0.721578017927405 0.18014768 0.9710199 prediction 0.44315603585481 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1440074 chr2:1440078 nonsynonymous SNV 0.004 3 25 hm5C_associated_SNPs_118944 1 0 0 0 2 TPO chr2:1440024 3'AG 1440024 Downstream 55bp
chr2 1440078 1440078 1 + C A rs61758083 1440074 + 1440054 1440094 41 TTGCAAACATGTCTGGATGTCTCCCTTACATGCTGCCCCCA TTGCAAACATGTCTGGATGTCTCCATTACATGCTGCCCCCA < 41bp 0.290398094509104 0.721578017927405 0.18014768 0.9710199 prediction 0.44315603585481 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1440074 chr2:1440078 nonsynonymous SNV 0.004 3 25 hm5C_associated_SNPs_118944 1 0 0 0 2 TPO chr2:1440156 5'GT 1440156 Upstream 79bp
chr5 133887748 133887748 1 + C T GBM 133887747 + 133887727 133887767 41 TCTTGCCCCTCACAGGTTTTCCGGACAGACTTGATCACAGC TCTTGCCCCTCACAGGTTTTCTGGACAGACTTGATCACAGC < 41bp 0.469553619246142 0.72157794716089 0.28845695 0.1523611 prediction 0.443155894321781 Functional Gain - JADE2 ENSG00000043143 CDS Human protein_coding chr5:133887747 chr5:133887748 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_118945 0 0 1 0 1 JADE2 chr5:133887742 3'AG 133887742 Downstream 7bp
chr15 78635919 78635919 1 + T A LUAD 78635915 + 78635895 78635935 41 GAAGGGGACGGCCCCAAAACCTACTGGACCCGTGAGCTGGC GAAGGGGACGGCCCCAAAACCTACAGGACCCGTGAGCTGGC < 41bp 0.683352642056088 0.904930441327152 0.06826088 0.7254646 prediction 0.443155598542128 Functional Gain - CRABP1 ENSG00000166426 CDS Human protein_coding chr15:78635915 chr15:78635919 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_118946 0 0 0 0 1 CRABP1 chr15:78635954 5'GT 78635954 Upstream 36bp
chr3 99895255 99895255 1 + C T UCEC 99895254 + 99895234 99895274 41 TGAGGAGAATGATGGACATTCCCGAGGTACCACGTAACCAG TGAGGAGAATGATGGACATTCTCGAGGTACCACGTAACCAG < 41bp 0.540045929867181 0.761621901665813 0.18734512 0.06178677 prediction 0.443151943597265 Functional Gain - CMSS1 ENSG00000184220 CDS Human protein_coding chr3:99895254 chr3:99895255 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_118948 0 0 1 0 2 CMSS1 chr3:99895171 3'AG 99895171 Downstream 85bp
chr3 99895255 99895255 1 + C T UCEC 99895254 + 99895234 99895274 41 TGAGGAGAATGATGGACATTCCCGAGGTACCACGTAACCAG TGAGGAGAATGATGGACATTCTCGAGGTACCACGTAACCAG < 41bp 0.540045929867181 0.761621901665813 0.18734512 0.06178677 prediction 0.443151943597265 Functional Gain - CMSS1 ENSG00000184220 CDS Human protein_coding chr3:99895254 chr3:99895255 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_118948 0 0 1 0 2 CMSS1 chr3:99895259 5'GT 99895259 Upstream 5bp
chr1 9416617 9416617 1 + C T UCEC 9416616 + 9416596 9416636 41 GTCTGGGGCCACTGTGAGATCCGAATGCGCTACTTGAACGG GTCTGGGGCCACTGTGAGATCTGAATGCGCTACTTGAACGG < 41bp 0.580753047091253 0.802325163893773 0.14326054 0.1377526 prediction 0.44314423360504 Functional Gain - SPSB1 ENSG00000171621 CDS Human protein_coding chr1:9416616 chr1:9416617 stopgain 1.000 1 22 hm5C_associated_SNPs_118950 0 0 1 0 1 SPSB1 chr1:9416644 5'GT 9416644 Upstream 28bp
chr2 1488564 1488564 1 + C A LUAD 1488563 + 1488543 1488583 41 ACGCCAGCTTCCAGGAGCACCCCGACCTGCCCGGGCTGTGG ACGCCAGCTTCCAGGAGCACCACGACCTGCCCGGGCTGTGG < 41bp 0.591483804783112 0.813051933656939 0.42844158 0.37318048 prediction 0.443136257747655 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1488563 chr2:1488564 nonsynonymous SNV 0.322 3 22 hm5C_associated_SNPs_118951 0 0 0 0 1 TPO chr2:1488626 5'GT 1488626 Upstream 63bp
chr16 67685900 67685900 1 + C T rs78320020 67685899 + 67685879 67685919 41 TTGGCAGGCCTGAGTGCAGCCCGGGATCAGCTGGTGAGGGG TTGGCAGGCCTGAGTGCAGCCTGGGATCAGCTGGTGAGGGG < 41bp 0.555042598401135 0.776610161566668 0.85059214 0.63707244 prediction 0.443135126331066 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67685899 chr16:67685900 nonsynonymous SNV 0.969 2 22 hm5C_associated_SNPs_118953 0 0 0 0 2 CARMIL2 chr16:67685824 3'AG 67685824 Downstream 77bp
chr16 67685900 67685900 1 + C T rs78320020 67685899 + 67685879 67685919 41 TTGGCAGGCCTGAGTGCAGCCCGGGATCAGCTGGTGAGGGG TTGGCAGGCCTGAGTGCAGCCTGGGATCAGCTGGTGAGGGG < 41bp 0.555042598401135 0.776610161566668 0.85059214 0.63707244 prediction 0.443135126331066 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67685899 chr16:67685900 nonsynonymous SNV 0.969 2 22 hm5C_associated_SNPs_118953 0 0 0 0 2 CARMIL2 chr16:67685911 5'GT 67685911 Upstream 12bp
chr20 1115847 1115847 1 + A G UCEC 1115844 + 1115824 1115864 41 CCATGAGCAGTGGGAAAAGGCTAATGTAAGCAGTCCCCACC CCATGAGCAGTGGGAAAAGGCTAGTGTAAGCAGTCCCCACC < 41bp 0.566450561874179 0.788012023233957 0.25109026 0.30791718 prediction 0.443122922719556 Functional Gain - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1115844 chr20:1115847 nonsynonymous SNV 0.038 0 24 hm5C_associated_SNPs_118956 0 0 1 0 1 PSMF1 chr20:1115764 3'AG 1115764 Downstream 84bp
chr22 25599758 25599758 1 + C T SKCM 25599757 + 25599737 25599777 41 GCATTTGAGTCCAGGGCCTTCCGCGGGGAGCAGTTTGTTCT GCATTTGAGTCCAGGGCCTTCTGCGGGGAGCAGTTTGTTCT < 41bp 0.569047278180628 0.79060674185361 0.66304284 0.45471135 prediction 0.443118927345963 Functional Gain - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25599757 chr22:25599758 nonsynonymous SNV 0.981 0 22 hm5C_associated_SNPs_118957 0 0 0 0 1 CRYBB3 chr22:25599730 3'AG 25599730 Downstream 29bp
chr2 171572854 171572854 1 + C A UCEC 171572850 + 171572830 171572870 41 CCACCTGTAGCCGCATCGGCCAGCCGGGCGCGGCGGCGCCC CCACCTGTAGCCGCATCGGCCAGCAGGGCGCGGCGGCGCCC < 41bp 0.704283209556122 0.925841761501789 0.81629884 0.85359 prediction 0.443117103891333 Functional Gain - SP5 ENSG00000204335 CDS Human protein_coding chr2:171572850 chr2:171572854 nonsynonymous SNV 0.633 0 25 hm5C_associated_SNPs_118958 0 0 1 0 1 SP5 chr2:171572769 3'AG 171572769 Downstream 86bp
chr8 86389423 86389423 1 + A G LUAD 86389420 + 86389400 86389440 41 TCCTTGGATTACTGGACCTACCCAGGCTCACTGACCACCCC TCCTTGGATTACTGGACCTACCCGGGCTCACTGACCACCCC < 41bp 0.543163341373289 0.764717003125407 0.0913842 0.53258705 prediction 0.443107323504236 Functional Gain - CA2 ENSG00000104267 CDS Human protein_coding chr8:86389420 chr8:86389423 synonymous SNV . 0 24 hm5C_associated_SNPs_118959 0 0 1 0 2 CA2 chr8:86389349 3'AG 86389349 Downstream 75bp
chr8 86389423 86389423 1 + A G LUAD 86389420 + 86389400 86389440 41 TCCTTGGATTACTGGACCTACCCAGGCTCACTGACCACCCC TCCTTGGATTACTGGACCTACCCGGGCTCACTGACCACCCC < 41bp 0.543163341373289 0.764717003125407 0.0913842 0.53258705 prediction 0.443107323504236 Functional Gain - CA2 ENSG00000104267 CDS Human protein_coding chr8:86389420 chr8:86389423 synonymous SNV . 0 24 hm5C_associated_SNPs_118959 0 0 1 0 2 CA2 chr8:86389504 5'GT 86389504 Upstream 82bp
chr4 83956360 83956360 1 + C A rs541775007 83956356 + 83956336 83956376 41 GCTGCCAGAGGCCCCCGCATCCACCGCTGAGCTGGGAGAAA GCTGCCAGAGGCCCCCGCATCCACAGCTGAGCTGGGAGAAA < 41bp 0.440347656299483 0.721541202090276 0.14618322 0.19873703 prediction 0.443082404180553 Functional Gain - COPS4 ENSG00000138663 UTR5 Human protein_coding chr4:83956356 chr4:83956360 . . 0 25 hm5C_associated_SNPs_118961 0 0 1 0 1 COPS4 chr4:83956451 5'GT 83956451 Upstream 92bp
chr19 5653155 5653155 1 + C T SKCM 5653154 + 5653134 5653174 41 CGCCAAGGTTGTGACAAATGCCCGGAGTCCTGGAGCTCGCT CGCCAAGGTTGTGACAAATGCTCGGAGTCCTGGAGCTCGCT < 41bp 0.454788447658843 0.721541089650459 0.53623265 0.34170842 prediction 0.443082179300918 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5653154 chr19:5653155 synonymous SNV . 0 22 hm5C_associated_SNPs_118962 0 0 1 0 1 SAFB chr19:5653126 3'AG 5653126 Downstream 30bp
chr1 228345508 228345508 1 + C A LUAD 228345507 + 228345487 228345527 41 ACGCGGCTGCTGGAGGAGATCCACAACCACTCCACCTTCGT ACGCGGCTGCTGGAGGAGATCAACAACCACTCCACCTTCGT < 41bp 0.466226472584971 0.721536372297425 0.1366454 0.1490219 prediction 0.443072744594849 Functional Gain - GJC2 ENSG00000198835 CDS Human protein_coding chr1:228345507 chr1:228345508 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_118963 0 0 1 0 1 GJC2 chr1:228345441 3'AG 228345441 Downstream 68bp
chr19 10398421 10398421 1 + C A MESO 10398420 + 10398400 10398440 41 TACGAGTTTGCTGCTGGACCCCGCGACTTCTGGCAGCCCGT TACGAGTTTGCTGCTGGACCCAGCGACTTCTGGCAGCCCGT < 41bp 0.593267024104601 0.814801521526441 0.058859825 0.34127057 prediction 0.44306899484368 Functional Gain - ICAM4 ENSG00000105371 CDS Human protein_coding chr19:10398420 chr19:10398421 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_118965 0 0 1 0 1 ICAM4 chr19:10398514 5'GT 10398514 Upstream 94bp
chrX 49099878 49099878 1 + C T COAD 49099877 + 49099857 49099897 41 TGCCAGCAGACGGGCCGGGACCGGCCAGGGGATGAGGACTG TGCCAGCAGACGGGCCGGGACTGGCCAGGGGATGAGGACTG < 41bp 0.526586336690992 0.748118972126529 0.1756272 0.29442966 prediction 0.443065270871073 Functional Gain - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49099877 chrX:49099878 nonsynonymous SNV 0.049 1 22 hm5C_associated_SNPs_118967 0 0 0 0 1 CCDC22 chrX:49099928 5'GT 49099928 Upstream 51bp
chr14 50159966 50159966 1 + C G HNSC 50159965 + 50159945 50159985 41 GGAACGCAGCGGCCACTGCGCCGTGGTGGACGGAAACTTCC GGAACGCAGCGGCCACTGCGCGGTGGTGGACGGAAACTTCC < 41bp 0.64127766084613 0.862809025712909 0.19305578 0.4129504 prediction 0.443062729733558 Functional Gain - KLHDC1 ENSG00000197776 CDS Human protein_coding chr14:50159965 chr14:50159966 synonymous SNV . 0 22 hm5C_associated_SNPs_118968 0 0 0 0 1 KLHDC1 chr14:50160008 5'GT 50160008 Upstream 43bp
chr19 991108 991108 1 + C A ESCA 991107 + 991087 991127 41 CAGAGGGAGAGGAGCTTCCACCCAGAGCAGGACGCCGGGAA CAGAGGGAGAGGAGCTTCCACACAGAGCAGGACGCCGGGAA < 41bp 0.45519784589806 0.721527659408267 0.38935935 0.23337191 prediction 0.443055318816534 Functional Gain - WDR18 ENSG00000065268 CDS Human protein_coding chr19:991107 chr19:991108 nonsynonymous SNV 0.948 0 22 hm5C_associated_SNPs_118969 0 0 1 2 2 WDR18 chr19:991081 3'AG 991081 Downstream 28bp
chr19 991108 991108 1 + C A ESCA 991107 + 991087 991127 41 CAGAGGGAGAGGAGCTTCCACCCAGAGCAGGACGCCGGGAA CAGAGGGAGAGGAGCTTCCACACAGAGCAGGACGCCGGGAA < 41bp 0.45519784589806 0.721527659408267 0.38935935 0.23337191 prediction 0.443055318816534 Functional Gain - WDR18 ENSG00000065268 CDS Human protein_coding chr19:991107 chr19:991108 nonsynonymous SNV 0.948 0 22 hm5C_associated_SNPs_118969 0 0 1 2 2 WDR18 chr19:991145 5'GT 991145 Upstream 38bp
chr1 197890496 197890496 1 + T C UCEC 197890494 + 197890474 197890514 41 ATTTCCGCCTCGGAGATGGTCATGCGCGCCCGAGACTCTGT ATTTCCGCCTCGGAGATGGTCACGCGCGCCCGAGACTCTGT < 41bp 0.443880070482404 0.721508834757028 0.41558027 0.4841144 prediction 0.443017669514056 Functional Gain - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197890494 chr1:197890496 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_118974 0 0 0 0 1 LHX9 chr1:197890434 3'AG 197890434 Downstream 63bp
chr22 42059692 42059692 1 + T C UCEC 42059690 + 42059670 42059710 41 GAAGAGGAGCTGAAGACCCACATCAGCAAGGGTACGCTGGG GAAGAGGAGCTGAAGACCCACACCAGCAAGGGTACGCTGGG < 41bp 0.61761223734346 0.83910968927235 0.06932598 0.09433204 prediction 0.442994903857779 Functional Gain - XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42059690 chr22:42059692 nonsynonymous SNV 0.149 0 23 hm5C_associated_SNPs_118979 0 0 1 1 1 XRCC6 chr22:42059626 3'AG 42059626 Downstream 67bp
chr2 108618396 108618396 1 + A G COAD 108618393 + 108618373 108618413 41 ATTGTCACATCCTGCAGTCGCAGACATCGGGTTCACTGCTG ATTGTCACATCCTGCAGTCGCAGGCATCGGGTTCACTGCTG < 41bp 0.57299037454065 0.794474850414961 0.33345166 0.8954315 prediction 0.442968951748621 Functional Gain - SLC5A7 ENSG00000115665 CDS Human protein_coding chr2:108618393 chr2:108618396 nonsynonymous SNV 0.898 2 24 hm5C_associated_SNPs_118982 0 0 0 0 2 SLC5A7 chr2:108618353 3'AG 108618353 Downstream 44bp
chr2 108618396 108618396 1 + A G COAD 108618393 + 108618373 108618413 41 ATTGTCACATCCTGCAGTCGCAGACATCGGGTTCACTGCTG ATTGTCACATCCTGCAGTCGCAGGCATCGGGTTCACTGCTG < 41bp 0.57299037454065 0.794474850414961 0.33345166 0.8954315 prediction 0.442968951748621 Functional Gain - SLC5A7 ENSG00000115665 CDS Human protein_coding chr2:108618393 chr2:108618396 nonsynonymous SNV 0.898 2 24 hm5C_associated_SNPs_118982 0 0 0 0 2 SLC5A7 chr2:108618390 3'AG 108618390 Downstream 7bp
chr16 106609 106609 1 + C T UCEC 106608 + 106588 106628 41 ACGGAAGACAGAAAGAAGCTCCGAGAGTAAGTGCCGGCCAC ACGGAAGACAGAAAGAAGCTCTGAGAGTAAGTGCCGGCCAC < 41bp 0.553368360209889 0.774846592822934 0.38958058 0.2922184 prediction 0.442956465226091 Functional Gain - SNRNP25 ENSG00000161981 CDS Human protein_coding chr16:106608 chr16:106609 stopgain 0.984 1 22 hm5C_associated_SNPs_118985 0 0 1 0 1 SNRNP25 chr16:106539 3'AG 106539 Downstream 71bp
chr12 69746053 69746053 1 + C T HNSC 69746052 + 69746032 69746072 41 GCTTGTGCAAAGAGGGTTGTCCGTGATCCACAAGGCATTAG GCTTGTGCAAAGAGGGTTGTCTGTGATCCACAAGGCATTAG < 41bp 0.494157394059925 0.721477398285924 0.10001212 0.06184709 prediction 0.442954796571847 Functional Gain - LYZ ENSG00000090382 CDS Human protein_coding chr12:69746052 chr12:69746053 nonsynonymous SNV 0.078 1 22 hm5C_associated_SNPs_118987 0 0 1 0 2 LYZ chr12:69746000 3'AG 69746000 Downstream 54bp
chr12 69746053 69746053 1 + C T HNSC 69746052 + 69746032 69746072 41 GCTTGTGCAAAGAGGGTTGTCCGTGATCCACAAGGCATTAG GCTTGTGCAAAGAGGGTTGTCTGTGATCCACAAGGCATTAG < 41bp 0.494157394059925 0.721477398285924 0.10001212 0.06184709 prediction 0.442954796571847 Functional Gain - LYZ ENSG00000090382 CDS Human protein_coding chr12:69746052 chr12:69746053 nonsynonymous SNV 0.078 1 22 hm5C_associated_SNPs_118987 0 0 1 0 2 LYZ chr12:69746078 5'GT 69746078 Upstream 26bp
chr11 1466886 1466886 1 + C A LUSC 1466885 + 1466865 1466905 41 GAGGATGAGGACCTGCCCCCCCGGAACGAGATAGGTATGGG GAGGATGAGGACCTGCCCCCCAGGAACGAGATAGGTATGGG < 41bp 0.583417131548743 0.804884793740292 0.39481893 0.85311043 prediction 0.442935324383097 Functional Gain - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1466885 chr11:1466886 synonymous SNV . 0 22 hm5C_associated_SNPs_118990 0 0 0 0 2 BRSK2 chr11:1466801 3'AG 1466801 Downstream 86bp
chr11 1466886 1466886 1 + C A LUSC 1466885 + 1466865 1466905 41 GAGGATGAGGACCTGCCCCCCCGGAACGAGATAGGTATGGG GAGGATGAGGACCTGCCCCCCAGGAACGAGATAGGTATGGG < 41bp 0.583417131548743 0.804884793740292 0.39481893 0.85311043 prediction 0.442935324383097 Functional Gain - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1466885 chr11:1466886 synonymous SNV . 0 22 hm5C_associated_SNPs_118990 0 0 0 0 2 BRSK2 chr11:1466898 5'GT 1466898 Upstream 13bp
chr9 133542125 133542125 1 + C T COAD 133542124 + 133542104 133542144 41 AACCGAGATGGGCCCCTTCACCGGCCGCGTGATCGCCCCGG AACCGAGATGGGCCCCTTCACTGGCCGCGTGATCGCCCCGG < 41bp 0.562667412153164 0.784124208038847 0.3741391 0.13833836 prediction 0.442913591771366 Functional Gain - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133542124 chr9:133542125 synonymous SNV . 0 22 hm5C_associated_SNPs_118995 0 0 0 0 1 PRDM12 chr9:133542185 5'GT 133542185 Upstream 61bp
chr1 48701423 48701423 1 + C T rs139075326 48701422 + 48701402 48701442 41 TCTGCGGGGGCTGATGATTGCCGTGATCATGGCCGCTCTCA TCTGCGGGGGCTGATGATTGCTGTGATCATGGCCGCTCTCA < 41bp 0.513178105304059 0.734627317604769 0.28002012 0.11338413 prediction 0.44289842460142 Functional Gain - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48701422 chr1:48701423 synonymous SNV . 0 22 hm5C_associated_SNPs_118998 0 0 0 0 1 SLC5A9 chr1:48701401 3'AG 48701401 Downstream 23bp
chr20 61467648 61467648 1 + C A LUSC 61467647 + 61467627 61467667 41 CTCTGGGCCTGCAGGGCGTCCCGGGTGTTCCTGGCATCACG CTCTGGGCCTGCAGGGCGTCCAGGGTGTTCCTGGCATCACG < 41bp 0.602473278738541 0.823921676187406 0.92345595 0.9242038 prediction 0.442896794897731 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61467647 chr20:61467648 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_119001 0 0 1 0 1 COL9A3 chr20:61467685 5'GT 61467685 Upstream 38bp
chr15 45444518 45444518 1 + A G rs1706804 45444515 + 45444495 45444535 41 GCCGCACATCACACGGGCATCACAGACACCACCCGCGTGGG GCCGCACATCACACGGGCATCACGGACACCACCCGCGTGGG < 41bp 0.471771998268197 0.721440940661561 0.62302333 0.840207 prediction 0.442881881323123 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45444515 chr15:45444518 synonymous SNV . 0 24 hm5C_associated_SNPs_119003 0 0 0 0 1 DUOX1 chr15:45444484 3'AG 45444484 Downstream 35bp
chr11 7674490 7674490 1 + A G rs147132206 7674487 + 7674467 7674507 41 CTCTGTGCACCCTGAGAGCTCACAGTAACACTGTGTGTGTC CTCTGTGCACCCTGAGAGCTCACGGTAACACTGTGTGTGTC < 41bp 0.541213817446422 0.762653616413554 0.15891331 0.31156355 prediction 0.442879597934265 Functional Gain - PPFIBP2 ENSG00000166387 UTR3 Human protein_coding chr11:7674487 chr11:7674490 . . 0 24 hm5C_associated_SNPs_119004 0 0 0 2 1 PPFIBP2 chr11:7674485 3'AG 7674485 Downstream 6bp
chr17 56274373 56274373 1 + C T rs33971258 56274372 + 56274352 56274392 41 TCCGCTCGGCACCCTCATGCCCCCAAAACAAGAACAGAGTC TCCGCTCGGCACCCTCATGCCTCCAAAACAAGAACAGAGTC < 41bp 0.440965944699724 0.721437908358184 0.042756855 0.97007644 prediction 0.442875816716368 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56274372 chr17:56274373 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_119007 0 0 0 0 1 EPX chr17:56274300 3'AG 56274300 Downstream 74bp
chrX 110385412 110385412 1 + C T COAD 110385411 + 110385391 110385431 41 TGTGGGGTTTGATGCAGTCACCGGGGAATTCACTGTAAGTA TGTGGGGTTTGATGCAGTCACTGGGGAATTCACTGTAAGTA < 41bp 0.549462810696151 0.770893246461735 0.8943956 0.49632534 prediction 0.442860871531168 Functional Gain - PAK3 ENSG00000077264 CDS Human protein_coding chrX:110385411 chrX:110385412 synonymous SNV . 0 22 hm5C_associated_SNPs_119008 0 0 0 1 2 PAK3 chrX:110385324 3'AG 110385324 Downstream 89bp
chrX 110385412 110385412 1 + C T COAD 110385411 + 110385391 110385431 41 TGTGGGGTTTGATGCAGTCACCGGGGAATTCACTGTAAGTA TGTGGGGTTTGATGCAGTCACTGGGGAATTCACTGTAAGTA < 41bp 0.549462810696151 0.770893246461735 0.8943956 0.49632534 prediction 0.442860871531168 Functional Gain - PAK3 ENSG00000077264 CDS Human protein_coding chrX:110385411 chrX:110385412 synonymous SNV . 0 22 hm5C_associated_SNPs_119008 0 0 0 1 2 PAK3 chrX:110385424 5'GT 110385424 Upstream 13bp
chr19 11559801 11559801 1 + T C rs139144555 11559799 + 11559779 11559819 41 TCGGGGGCTCTCCCACCAGCCTTGGGTGAGTGGCTTGGGCT TCGGGGGCTCTCCCACCAGCCTCGGGTGAGTGGCTTGGGCT < 41bp 0.609660588180955 0.831088834346242 0.4518703 0.6533258 prediction 0.442856492330573 Functional Gain - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11559799 chr19:11559801 synonymous SNV . 0 23 hm5C_associated_SNPs_119010 2 0 1 0 2 PRKCSH chr19:11559729 3'AG 11559729 Downstream 73bp
chr19 11559801 11559801 1 + T C rs139144555 11559799 + 11559779 11559819 41 TCGGGGGCTCTCCCACCAGCCTTGGGTGAGTGGCTTGGGCT TCGGGGGCTCTCCCACCAGCCTCGGGTGAGTGGCTTGGGCT < 41bp 0.609660588180955 0.831088834346242 0.4518703 0.6533258 prediction 0.442856492330573 Functional Gain - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11559799 chr19:11559801 synonymous SNV . 0 23 hm5C_associated_SNPs_119010 2 0 1 0 2 PRKCSH chr19:11559803 5'GT 11559803 Upstream 3bp
chr17 46628485 46628485 1 + C A rs544041703 46628481 + 46628461 46628501 41 TCCCCCGCCGCCGCCGCCACCGCCCCCGCTGCCACCACTGC TCCCCCGCCGCCGCCGCCACCGCCACCGCTGCCACCACTGC < 41bp 0.701134954508132 0.922555621215543 0.28274685 0.44257134 prediction 0.442841333414822 Functional Gain - HOXB3 ENSG00000120093 CDS Human protein_coding chr17:46628481 chr17:46628485 synonymous SNV . 0 25 hm5C_associated_SNPs_119011 0 0 1 0 1 HOXB3 chr17:46628386 3'AG 46628386 Downstream 100bp
chr20 61442929 61442929 1 + A G rs144253683 61442926 + 61442906 61442946 41 CACGGGCACGGTGGGCCGAGCACAGAACTACCAGAAGCGCT CACGGGCACGGTGGGCCGAGCACGGAACTACCAGAAGCGCT < 41bp 0.471015533006519 0.721408307283277 0.16307229 0.53293246 prediction 0.442816614566555 Functional Gain - OGFR ENSG00000060491 CDS Human protein_coding chr20:61442926 chr20:61442929 nonsynonymous SNV 0.645 0 24 hm5C_associated_SNPs_119014 0 0 1 0 1 OGFR chr20:61442962 5'GT 61442962 Upstream 34bp
chr11 5011861 5011861 1 + C T SKCM 5011860 + 5011840 5011880 41 CCCACATGATATGAAGCCATCCGCAGTGAAAGACAGTATAT CCCACATGATATGAAGCCATCTGCAGTGAAAGACAGTATAT < 41bp 0.57577984204731 0.797179825694206 0.026910633 0.0856002 prediction 0.442799967293792 Functional Gain - MMP26 ENSG00000167346 CDS Human protein_coding chr11:5011860 chr11:5011861 synonymous SNV . 0 22 hm5C_associated_SNPs_119016 0 0 0 0 1 MMP26 chr11:5011828 3'AG 5011828 Downstream 34bp
chr4 15850195 15850195 1 + T C UCEC 15850193 + 15850173 15850213 41 TTCTTCAGTGTGTGAAAAATCCTGAGGATTCATCTTGCACA TTCTTCAGTGTGTGAAAAATCCCGAGGATTCATCTTGCACA < 41bp 0.602716721881556 0.824113624518795 0.106425256 0.08945283 prediction 0.442793805274479 Functional Gain - CD38 ENSG00000004468 CDS Human protein_coding chr4:15850193 chr4:15850195 synonymous SNV . 0 23 hm5C_associated_SNPs_119018 0 0 0 0 1 CD38 chr4:15850162 3'AG 15850162 Downstream 34bp
chr20 61588815 61588815 1 + C G ESCA 61588814 + 61588794 61588834 41 ATTGGGGGTGAGAAGGTCATCCTGCTGTCAGCCTCTGCCTG ATTGGGGGTGAGAAGGTCATCGTGCTGTCAGCCTCTGCCTG < 41bp 0.397916065571436 0.721395196253426 0.406231 0.723649 prediction 0.442790392506852 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61588814 chr20:61588815 nonsynonymous SNV 0.689 0 22 hm5C_associated_SNPs_119019 0 0 1 0 1 SLC17A9 chr20:61588793 3'AG 61588793 Downstream 23bp
chr12 69644996 69644996 1 + C T UCEC 69644995 + 69644975 69645015 41 AATGGAGATGCCCCAGAAGACCGAGATTACATGGATACTCT AATGGAGATGCCCCAGAAGACTGAGATTACATGGATACTCT < 41bp 0.483896715455127 0.721388093006458 0.2942878 0.21508348 prediction 0.442776186012916 Functional Gain - CPSF6 ENSG00000111605 CDS Human protein_coding chr12:69644995 chr12:69644996 stopgain 0.955 1 22 hm5C_associated_SNPs_119022 0 0 1 0 1 CPSF6 chr12:69644909 3'AG 69644909 Downstream 88bp
chr12 57974895 57974895 1 + C A LUSC 57974894 + 57974874 57974914 41 CGGTACCAGCAGGAGGTGGACCGCATCAAGGAGGCCGTTCG CGGTACCAGCAGGAGGTGGACAGCATCAAGGAGGCCGTTCG < 41bp 0.599273168850467 0.820649892452634 0.57945377 0.56065136 prediction 0.442753447204334 Functional Gain - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57974894 chr12:57974895 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_119027 0 0 1 0 1 KIF5A chr12:57974955 5'GT 57974955 Upstream 61bp
chr4 25317003 25317003 1 + C A THCA 25317002 + 25316982 25317022 41 AGATGTCAGCCTCCCCTGTCCCGAACGCAGTGTGTGGAAAG AGATGTCAGCCTCCCCTGTCCAGAACGCAGTGTGTGGAAAG < 41bp 0.459592351817993 0.721373126664078 0.115765065 0.1536617 prediction 0.442746253328156 Functional Gain - ZCCHC4 ENSG00000168228 CDS Human protein_coding chr4:25317002 chr4:25317003 synonymous SNV . 0 22 hm5C_associated_SNPs_119028 0 0 1 0 2 ZCCHC4 chr4:25316940 3'AG 25316940 Downstream 64bp
chr4 25317003 25317003 1 + C A THCA 25317002 + 25316982 25317022 41 AGATGTCAGCCTCCCCTGTCCCGAACGCAGTGTGTGGAAAG AGATGTCAGCCTCCCCTGTCCAGAACGCAGTGTGTGGAAAG < 41bp 0.459592351817993 0.721373126664078 0.115765065 0.1536617 prediction 0.442746253328156 Functional Gain - ZCCHC4 ENSG00000168228 CDS Human protein_coding chr4:25317002 chr4:25317003 synonymous SNV . 0 22 hm5C_associated_SNPs_119028 0 0 1 0 2 ZCCHC4 chr4:25317022 5'GT 25317022 Upstream 20bp
chr3 4354644 4354644 1 + C T UCEC 4354643 + 4354623 4354663 41 TCCCACTCAAATAACCTTTCCCGGATGCATTTGTGTCAAAA TCCCACTCAAATAACCTTTCCTGGATGCATTTGTGTCAAAA < 41bp 0.51006468898775 0.731433992662517 0.49493676 0.393135 prediction 0.442738607349532 Functional Gain - SETMAR ENSG00000170364 CDS Human protein_coding chr3:4354643 chr3:4354644 synonymous SNV . 0 22 hm5C_associated_SNPs_119030 0 0 0 0 1 SETMAR chr3:4354582 3'AG 4354582 Downstream 63bp
chr3 108572535 108572535 1 + C T COAD 108572534 + 108572514 108572554 41 TAAGGGGAAGCGTAGAAAGCCCAGGAAACAGAATACTCATT TAAGGGGAAGCGTAGAAAGCCTAGGAAACAGAATACTCATT < 41bp 0.521427515535299 0.742796002427002 0.092030376 0.042246193 prediction 0.442736973783405 Functional Gain - TRAT1 ENSG00000163519 CDS Human protein_coding chr3:108572534 chr3:108572535 synonymous SNV . 0 22 hm5C_associated_SNPs_119031 0 0 0 0 1 TRAT1 chr3:108572467 3'AG 108572467 Downstream 69bp
chr11 65628336 65628336 1 + C T LUSC 65628335 + 65628315 65628355 41 GAGGCGACCCGCAGCAGGCGCCGCACGCGCTTCGTATTTCA GAGGCGACCCGCAGCAGGCGCTGCACGCGCTTCGTATTTCA < 41bp 0.489298271140949 0.721364063886463 0.23003629 0.25322372 prediction 0.442728127772926 Functional Gain - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65628335 chr11:65628336 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_119032 0 0 0 0 1 MUS81 chr11:65628359 5'GT 65628359 Upstream 24bp
chr3 10861415 10861415 1 + A G OV 10861412 + 10861392 10861432 41 TTCAGGCATTGGCTATGCAACACAGGTGATTGAGGCCCATC TTCAGGCATTGGCTATGCAACACGGGTGATTGAGGCCCATC < 41bp 0.558253808308948 0.779617395415591 0.081246495 0.14258635 prediction 0.442727174213286 Functional Gain - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10861412 chr3:10861415 nonsynonymous SNV 0.984 3 24 hm5C_associated_SNPs_119033 0 0 0 0 1 SLC6A11 chr3:10861397 3'AG 10861397 Downstream 19bp
chr19 47634313 47634313 1 + T G rs177918 47634310 + 47634290 47634330 41 GGGCCGGCGCGGCTTGAGGCCGCTAGGGTCTGGAGGGGGCG GGGCCGGCGCGGCTTGAGGCCGCGAGGGTCTGGAGGGGGCG < 41bp 0.703268767771405 0.924630798887379 0.36981183 0.5892198 prediction 0.442724062231948 Functional Gain - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47634310 chr19:47634313 synonymous SNV . 0 24 hm5C_associated_SNPs_119034 0 0 1 0 1 SAE1 chr19:47634369 5'GT 47634369 Upstream 57bp
chr3 129221686 129221686 1 + C T SKCM 129221685 + 129221665 129221705 41 GAAGATGGGTGACCTCAAGTCCCTGGTGCAGCTGCACGTGG GAAGATGGGTGACCTCAAGTCTCTGGTGCAGCTGCACGTGG < 41bp 0.468220104120719 0.721361047152305 0.26505098 0.2874508 prediction 0.44272209430461 Functional Gain - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129221685 chr3:129221686 synonymous SNV . 0 22 hm5C_associated_SNPs_119035 0 0 1 0 1 IFT122 chr3:129221725 5'GT 129221725 Upstream 40bp
chr17 38447782 38447782 1 + C T SKCM 38447781 + 38447761 38447801 41 TGTCCCAGATCGGCTGCCTGCCAGGGAAAGGGAGATGGATG TGTCCCAGATCGGCTGCCTGCTAGGGAAAGGGAGATGGATG < 41bp 0.584109855082442 0.805466156962492 0.433919 0.29037526 prediction 0.442712603760099 Functional Gain - CDC6 ENSG00000094804 CDS Human protein_coding chr17:38447781 chr17:38447782 synonymous SNV . 0 22 hm5C_associated_SNPs_119038 0 0 0 0 1 CDC6 chr17:38447721 3'AG 38447721 Downstream 62bp
chr1 898548 898548 1 + C T LUAD 898547 + 898527 898567 41 GCCTACGACACGCGCACCGACCGCTGGCACGTGGTGGCCTC GCCTACGACACGCGCACCGACTGCTGGCACGTGGTGGCCTC < 41bp 0.468058507725394 0.721356250380984 0.07772654 0.119276136 prediction 0.442712500761967 Functional Gain - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:898547 chr1:898548 nonsynonymous SNV 0.992 3 22 hm5C_associated_SNPs_119039 0 0 0 0 2 KLHL17 chr1:898489 3'AG 898489 Downstream 60bp
chr1 898548 898548 1 + C T LUAD 898547 + 898527 898567 41 GCCTACGACACGCGCACCGACCGCTGGCACGTGGTGGCCTC GCCTACGACACGCGCACCGACTGCTGGCACGTGGTGGCCTC < 41bp 0.468058507725394 0.721356250380984 0.07772654 0.119276136 prediction 0.442712500761967 Functional Gain - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:898547 chr1:898548 nonsynonymous SNV 0.992 3 22 hm5C_associated_SNPs_119039 0 0 0 0 2 KLHL17 chr1:898633 5'GT 898633 Upstream 86bp
chr19 10742306 10742306 1 + C T SKCM 10742305 + 10742285 10742325 41 TCCTCTGCTCCATGCAGTGGCCCGGAGATGCTTCCCCGCTA TCCTCTGCTCCATGCAGTGGCTCGGAGATGCTTCCCCGCTA < 41bp 0.581662019228504 0.803016924909045 0.3503464 0.16216597 prediction 0.442709811361081 Functional Gain - SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10742305 chr19:10742306 synonymous SNV . 0 22 hm5C_associated_SNPs_119040 0 0 1 0 1 SLC44A2 chr19:10742302 3'AG 10742302 Downstream 5bp
chr1 8397957 8397957 1 + C T LUAD 8397956 + 8397936 8397976 41 TTCAGGGGGACCCCAAGGCCCCGCACACATCAGAGGCGTAT TTCAGGGGGACCCCAAGGCCCTGCACACATCAGAGGCGTAT < 41bp 0.455367613921715 0.721354070307697 0.042151213 0.07204571 prediction 0.442708140615395 Functional Gain - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8397956 chr1:8397957 nonsynonymous SNV 0.640 3 22 hm5C_associated_SNPs_119041 0 0 0 0 1 SLC45A1 chr1:8398052 5'GT 8398052 Upstream 96bp
chr2 29256420 29256420 1 + T C rs115336346 29256418 + 29256398 29256438 41 GTGTGTGAGAACGGGCTGCCCATCAAGGAGGGGTATGGCTG GTGTGTGAGAACGGGCTGCCCACCAAGGAGGGGTATGGCTG < 41bp 0.436806398083477 0.721344797608358 0.12959084 0.14281219 prediction 0.442689595216717 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29256418 chr2:29256420 nonsynonymous SNV 0.011 0 23 hm5C_associated_SNPs_119043 0 0 0 0 2 TOGARAM2 chr2:29256335 3'AG 29256335 Downstream 86bp
chr2 29256420 29256420 1 + T C rs115336346 29256418 + 29256398 29256438 41 GTGTGTGAGAACGGGCTGCCCATCAAGGAGGGGTATGGCTG GTGTGTGAGAACGGGCTGCCCACCAAGGAGGGGTATGGCTG < 41bp 0.436806398083477 0.721344797608358 0.12959084 0.14281219 prediction 0.442689595216717 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29256418 chr2:29256420 nonsynonymous SNV 0.011 0 23 hm5C_associated_SNPs_119043 0 0 0 0 2 TOGARAM2 chr2:29256429 5'GT 29256429 Upstream 10bp
chr7 92027063 92027063 1 + C T UCEC 92027062 + 92027042 92027082 41 CCAGAAGGCGGCAGCAGCAGCCGCAGGCCTGGCACATCCGT CCAGAAGGCGGCAGCAGCAGCTGCAGGCCTGGCACATCCGT < 41bp 0.452674037140923 0.721343828860272 0.29041848 0.327011 prediction 0.442687657720544 Functional Gain - ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:92027062 chr7:92027063 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_119044 0 0 0 0 1 ANKIB1 chr7:92027037 3'AG 92027037 Downstream 27bp
chr5 178454500 178454500 1 + C T rs569685669 178454499 + 178454479 178454519 41 CGTGACGTTCAGGGATGTGGCCGTGTTCTTCAGCCAGGACG CGTGACGTTCAGGGATGTGGCTGTGTTCTTCAGCCAGGACG < 41bp 0.531953482574111 0.75328620094954 0.41409653 0.17848259 prediction 0.442665436750858 Functional Gain - ZNF879 ENSG00000234284 CDS Human protein_coding chr5:178454499 chr5:178454500 nonsynonymous SNV 0.985 0 22 hm5C_associated_SNPs_119046 0 0 0 0 1 ZNF879 chr5:178454474 3'AG 178454474 Downstream 27bp
chr14 23072384 23072384 1 + C T UCEC 23072383 + 23072363 23072403 41 GTGAGCCCCGAGCAAAACGACCGCACCCCCTTGGTGATGGT GTGAGCCCCGAGCAAAACGACTGCACCCCCTTGGTGATGGT < 41bp 0.453491017907004 0.721325244079916 0.011895001 0.02094838 prediction 0.442650488159832 Functional Gain - ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23072383 chr14:23072384 nonsynonymous SNV 0.894 3 22 hm5C_associated_SNPs_119048 0 0 0 0 1 ABHD4 chr14:23072295 3'AG 23072295 Downstream 90bp
chr17 6902062 6902062 1 + C A LUAD 6902061 + 6902041 6902081 41 ACCTGGAAGGAAGGGTTACCCCTGACCATCGCTGCAGACCG ACCTGGAAGGAAGGGTTACCCATGACCATCGCTGCAGACCG < 41bp 0.609207720447802 0.83052716245309 0.1903576 0.41057813 prediction 0.442638884010577 Functional Gain - ALOX12 ENSG00000108839 CDS Human protein_coding chr17:6902061 chr17:6902062 nonsynonymous SNV 0.946 0 22 hm5C_associated_SNPs_119050 0 0 0 0 1 ALOX12 chr17:6902034 3'AG 6902034 Downstream 29bp
chr1 52248269 52248269 1 + A G rs549736209 52248266 + 52248246 52248286 41 GGACCAGTTCCCTGGGTTTCCAAAAACAGTGTAACATTTGT GGACCAGTTCCCTGGGTTTCCAAGAACAGTGTAACATTTGT < 41bp 0.504901548342236 0.726217499041283 0.75576234 0.7318974 prediction 0.442631901398093 Functional Gain - OSBPL9 ENSG00000117859 CDS Human protein_coding chr1:52248266 chr1:52248269 synonymous SNV . 0 24 hm5C_associated_SNPs_119051 0 0 1 0 2 OSBPL9 chr1:52248231 3'AG 52248231 Downstream 39bp
chr1 52248269 52248269 1 + A G rs549736209 52248266 + 52248246 52248286 41 GGACCAGTTCCCTGGGTTTCCAAAAACAGTGTAACATTTGT GGACCAGTTCCCTGGGTTTCCAAGAACAGTGTAACATTTGT < 41bp 0.504901548342236 0.726217499041283 0.75576234 0.7318974 prediction 0.442631901398093 Functional Gain - OSBPL9 ENSG00000117859 CDS Human protein_coding chr1:52248266 chr1:52248269 synonymous SNV . 0 24 hm5C_associated_SNPs_119051 0 0 1 0 2 OSBPL9 chr1:52248315 5'GT 52248315 Upstream 47bp
chr12 68043673 68043673 1 + C T GBM 68043672 + 68043652 68043692 41 TGGGGACTGGCCCGCCCTCCCCCATCGCCCTGCCGCCTCTC TGGGGACTGGCCCGCCCTCCCTCATCGCCCTGCCGCCTCTC < 41bp 0.582273363286871 0.803584977330754 0.26884466 0.22895992 prediction 0.442623228087765 Functional Gain - DYRK2 ENSG00000127334 CDS Human protein_coding chr12:68043672 chr12:68043673 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_119054 0 0 1 0 2 DYRK2 chr12:68043577 3'AG 68043577 Downstream 97bp
chr12 68043673 68043673 1 + C T GBM 68043672 + 68043652 68043692 41 TGGGGACTGGCCCGCCCTCCCCCATCGCCCTGCCGCCTCTC TGGGGACTGGCCCGCCCTCCCTCATCGCCCTGCCGCCTCTC < 41bp 0.582273363286871 0.803584977330754 0.26884466 0.22895992 prediction 0.442623228087765 Functional Gain - DYRK2 ENSG00000127334 CDS Human protein_coding chr12:68043672 chr12:68043673 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_119054 0 0 1 0 2 DYRK2 chr12:68043725 5'GT 68043725 Upstream 53bp
chr19 56024505 56024505 1 + C A ACC 56024501 + 56024481 56024521 41 GGCTGGCACCACCAGGAGCCCAGGCAGTCCTCCAACTCTGA GGCTGGCACCACCAGGAGCCCAGGAAGTCCTCCAACTCTGA < 41bp 0.313555595932953 0.721306113368829 0.27155906 0.7738863 prediction 0.442612226737658 Functional Gain - SSC5D ENSG00000179954 CDS Human protein_coding chr19:56024501 chr19:56024505 synonymous SNV . 0 25 hm5C_associated_SNPs_119056 0 0 0 0 1 SSC5D chr19:56024539 5'GT 56024539 Upstream 35bp
chr2 207655353 207655353 1 + A G ACC 207655350 + 207655330 207655370 41 TGTTTGGGTTCAAGCCACCCCAGAGGATTCCTTGCTATGAA TGTTTGGGTTCAAGCCACCCCAGGGGATTCCTTGCTATGAA < 41bp 0.543282936760644 0.764584170596221 0.45388567 0.87059677 prediction 0.442602467671154 Functional Gain - FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207655350 chr2:207655353 synonymous SNV . 0 24 hm5C_associated_SNPs_119057 0 0 1 0 2 FASTKD2 chr2:207655296 3'AG 207655296 Downstream 58bp
chr2 207655353 207655353 1 + A G ACC 207655350 + 207655330 207655370 41 TGTTTGGGTTCAAGCCACCCCAGAGGATTCCTTGCTATGAA TGTTTGGGTTCAAGCCACCCCAGGGGATTCCTTGCTATGAA < 41bp 0.543282936760644 0.764584170596221 0.45388567 0.87059677 prediction 0.442602467671154 Functional Gain - FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207655350 chr2:207655353 synonymous SNV . 0 24 hm5C_associated_SNPs_119057 0 0 1 0 2 FASTKD2 chr2:207655410 5'GT 207655410 Upstream 58bp
chr18 51888235 51888235 1 + A G STAD 51888232 + 51888212 51888252 41 ATTGGACATTGAGAAGAATCCACATTTTCAAGGACCCTACA ATTGGACATTGAGAAGAATCCACGTTTTCAAGGACCCTACA < 41bp 0.495330810880375 0.721300956777723 0.049162924 0.23794499 prediction 0.442601913555445 Functional Gain - C18orf54 ENSG00000166845 CDS Human protein_coding chr18:51888232 chr18:51888235 nonsynonymous SNV 0.114 0 24 hm5C_associated_SNPs_119058 0 0 1 0 1 C18orf54 chr18:51888318 5'GT 51888318 Upstream 84bp
chrX 48121246 48121246 1 + C T UCEC 48121245 + 48121225 48121265 41 GCAGGCTCCACAGAATCATCCCGAAGGTGAGTATCTCTCAA GCAGGCTCCACAGAATCATCCTGAAGGTGAGTATCTCTCAA < 41bp 0.551135463580541 0.772436166867155 0.09004098 0.17677057 prediction 0.442601406573228 Functional Gain - SSX1 ENSG00000126752 CDS Human protein_coding chrX:48121245 chrX:48121246 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_119059 0 0 1 0 2 SSX1 chrX:48121201 3'AG 48121201 Downstream 46bp
chrX 48121246 48121246 1 + C T UCEC 48121245 + 48121225 48121265 41 GCAGGCTCCACAGAATCATCCCGAAGGTGAGTATCTCTCAA GCAGGCTCCACAGAATCATCCTGAAGGTGAGTATCTCTCAA < 41bp 0.551135463580541 0.772436166867155 0.09004098 0.17677057 prediction 0.442601406573228 Functional Gain - SSX1 ENSG00000126752 CDS Human protein_coding chrX:48121245 chrX:48121246 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_119059 0 0 1 0 2 SSX1 chrX:48121250 5'GT 48121250 Upstream 5bp
chr9 140508890 140508890 1 + C T SKCM 140508889 + 140508869 140508909 41 CCTTGCCCCAGTCGGCCCTGCCGGGCTGCAGCCTCATCCAC CCTTGCCCCAGTCGGCCCTGCTGGGCTGCAGCCTCATCCAC < 41bp 0.565315488515477 0.786615076207489 0.4907755 0.3149345 prediction 0.442599175384023 Functional Gain - ARRDC1 ENSG00000197070 CDS Human protein_coding chr9:140508889 chr9:140508890 nonsynonymous SNV 0.979 1 22 hm5C_associated_SNPs_119060 0 0 1 1 1 ARRDC1 chr9:140508927 5'GT 140508927 Upstream 38bp
chr4 187173298 187173298 1 + A G LGG 187173295 + 187173275 187173315 41 CACCTGTGTGGAGGGTCACTCATAGGACACCAGTGGGTCCT CACCTGTGTGGAGGGTCACTCATGGGACACCAGTGGGTCCT < 41bp 0.579541259058471 0.800832222821788 0.44587213 0.91053545 prediction 0.442581927526633 Functional Gain - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187173295 chr4:187173298 nonsynonymous SNV 0.914 5 24 hm5C_associated_SNPs_119063 0 0 0 0 1 KLKB1 chr4:187173339 5'GT 187173339 Upstream 42bp
chr3 197687111 197687111 1 + C T HNSC 197687110 + 197687090 197687130 41 TCCATGGTAACGACGCTCGGCCCGAAGATGGCGGCCGAATG TCCATGGTAACGACGCTCGGCTCGAAGATGGCGGCCGAATG < 41bp 0.512374657472947 0.733664564683776 0.09950042 0.24206924 prediction 0.442579814421657 Functional Gain - LMLN ENSG00000185621 CDS Human protein_coding chr3:197687110 chr3:197687111 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_119064 0 0 0 0 1 LMLN chr3:197687190 5'GT 197687190 Upstream 80bp
chr8 31015025 31015025 1 + C A PRAD 31015024 + 31015004 31015044 41 AAGATTATTGCTGATGTTATCCGAAACCCTCCCGTCAACTC AAGATTATTGCTGATGTTATCAGAAACCCTCCCGTCAACTC < 41bp 0.593891608470462 0.815178375503721 0.7457703 0.9026219 prediction 0.442573534066519 Functional Gain - WRN ENSG00000165392 CDS Human protein_coding chr8:31015024 chr8:31015025 synonymous SNV . 0 22 hm5C_associated_SNPs_119067 0 0 1 0 1 WRN chr8:31015046 5'GT 31015046 Upstream 22bp
chr14 23312554 23312554 1 + C A rs2236302 23312550 + 23312530 23312570 41 TGACCCCTCGGCCATCATGGCACCCTTTTACCAGTGGATGG TGACCCCTCGGCCATCATGGCACCATTTTACCAGTGGATGG < 41bp 0.285618792043137 0.721278674717991 0.0119383335 0.026166618 prediction 0.442557349435982 Functional Gain - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23312550 chr14:23312554 synonymous SNV . 0 25 hm5C_associated_SNPs_119070 0 0 0 0 1 MMP14 chr14:23312466 3'AG 23312466 Downstream 89bp
chr1 15707946 15707946 1 + A G rs181178205 15707943 + 15707923 15707963 41 ATGAAAAGGACGTTGAACAGCTCAGGTACCTCGGCACCCCC ATGAAAAGGACGTTGAACAGCTCGGGTACCTCGGCACCCCC < 41bp 0.534352363819026 0.75562847081644 0.41155082 0.65979755 prediction 0.442552213994829 Functional Gain - FHAD1 ENSG00000142621 CDS Human protein_coding chr1:15707943 chr1:15707946 nonsynonymous SNV 0.992 3 24 hm5C_associated_SNPs_119071 0 0 0 0 1 FHAD1 chr1:15707947 5'GT 15707947 Upstream 2bp
chr9 101788230 101788230 1 + C A LUAD 101788229 + 101788209 101788249 41 TGATGGAGCCACCGGCCTTCCCGGGATGAAAGGGGAGAAGG TGATGGAGCCACCGGCCTTCCAGGGATGAAAGGGGAGAAGG < 41bp 0.615209902313495 0.836482250414126 0.8615415 0.86321735 prediction 0.442544696201261 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101788229 chr9:101788230 synonymous SNV . 0 22 hm5C_associated_SNPs_119074 0 0 0 0 2 COL15A1 chr9:101788186 3'AG 101788186 Downstream 45bp
chr9 101788230 101788230 1 + C A LUAD 101788229 + 101788209 101788249 41 TGATGGAGCCACCGGCCTTCCCGGGATGAAAGGGGAGAAGG TGATGGAGCCACCGGCCTTCCAGGGATGAAAGGGGAGAAGG < 41bp 0.615209902313495 0.836482250414126 0.8615415 0.86321735 prediction 0.442544696201261 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101788229 chr9:101788230 synonymous SNV . 0 22 hm5C_associated_SNPs_119074 0 0 0 0 2 COL15A1 chr9:101788248 5'GT 101788248 Upstream 19bp
chr1 35853198 35853198 1 + T C SARC 35853195 + 35853175 35853215 41 TCAGGTGCTGACAAGTCATTCTGTAGTGAAGGTAAAGACAG TCAGGTGCTGACAAGTCATTCTGCAGTGAAGGTAAAGACAG < 41bp 0.508445413360018 0.729717484043876 0.116693616 0.24948367 prediction 0.442544141367717 Functional Gain - ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35853195 chr1:35853198 synonymous SNV . 0 24 hm5C_associated_SNPs_119075 0 0 1 0 1 ZMYM4 chr1:35853205 5'GT 35853205 Upstream 8bp
chr19 36349363 36349363 1 + C A BLCA 36349362 + 36349342 36349382 41 GCCAATGGCCAGCATGACCTCCACATTAGGCCCGTGGAGCT GCCAATGGCCAGCATGACCTCAACATTAGGCCCGTGGAGCT < 41bp 0.598890774545445 0.820162123152283 0.09692606 0.02469033 prediction 0.442542697213675 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36349362 chr19:36349363 nonsynonymous SNV 0.991 0 22 hm5C_associated_SNPs_119076 0 0 0 0 1 KIRREL2 chr19:36349459 5'GT 36349459 Upstream 97bp
chr19 35741297 35741297 1 + T C STAD 35741294 + 35741274 35741314 41 TTCCAGCCTGTGACCCTGCCCTGTACCTACCAGATGACCTC TTCCAGCCTGTGACCCTGCCCTGCACCTACCAGATGACCTC < 41bp 0.508371679581188 0.729642023165917 0.09099737 0.11389583 prediction 0.442540687169458 Functional Gain - LSR ENSG00000105699 CDS Human protein_coding chr19:35741294 chr19:35741297 synonymous SNV . 0 24 hm5C_associated_SNPs_119077 0 0 1 0 2 LSR chr19:35741218 3'AG 35741218 Downstream 80bp
chr19 35741297 35741297 1 + T C STAD 35741294 + 35741274 35741314 41 TTCCAGCCTGTGACCCTGCCCTGTACCTACCAGATGACCTC TTCCAGCCTGTGACCCTGCCCTGCACCTACCAGATGACCTC < 41bp 0.508371679581188 0.729642023165917 0.09099737 0.11389583 prediction 0.442540687169458 Functional Gain - LSR ENSG00000105699 CDS Human protein_coding chr19:35741294 chr19:35741297 synonymous SNV . 0 24 hm5C_associated_SNPs_119077 0 0 1 0 2 LSR chr19:35741228 3'AG 35741228 Downstream 70bp
chr19 48525434 48525434 1 + C T STAD 48525433 + 48525413 48525453 41 CTTCTGCTTCCTAGGAATTTCCGCGTTGGTCCCTGGCTTTC CTTCTGCTTCCTAGGAATTTCTGCGTTGGTCCCTGGCTTTC < 41bp 0.54394807987242 0.765216194754606 0.22717693 0.230297 prediction 0.442536229764374 Functional Gain - ELSPBP1 ENSG00000169393 CDS Human protein_coding chr19:48525433 chr19:48525434 synonymous SNV . 0 22 hm5C_associated_SNPs_119079 0 0 0 0 1 ELSPBP1 chr19:48525427 3'AG 48525427 Downstream 8bp
chr11 7324557 7324557 1 + C T SKCM 7324556 + 7324536 7324576 41 CTCTCCACCCAGACGGGGATCCAGGAGAACTGTGCCCATGG CTCTCCACCCAGACGGGGATCTAGGAGAACTGTGCCCATGG < 41bp 0.568643250599868 0.789910254505437 0.88428426 0.3513983 prediction 0.442534007811136 Functional Gain - SYT9 ENSG00000170743 CDS Human protein_coding chr11:7324556 chr11:7324557 stopgain 0.383 1 22 hm5C_associated_SNPs_119080 0 0 0 0 1 SYT9 chr11:7324621 5'GT 7324621 Upstream 65bp
chrX 152036194 152036194 1 + C T BRCA 152036193 + 152036173 152036213 41 CTGGCGGCAGAGCAGCTCTCCCGAGACTCGACACTGGGTGG CTGGCGGCAGAGCAGCTCTCCTGAGACTCGACACTGGGTGG < 41bp 0.485799970409213 0.721263471373967 0.4184816 0.6077391 prediction 0.442526942747933 Functional Gain - NSDHL ENSG00000147383 CDS Human protein_coding chrX:152036193 chrX:152036194 stopgain 0.243 0 22 hm5C_associated_SNPs_119082 0 0 1 0 2 NSDHL chrX:152036115 3'AG 152036115 Downstream 80bp
chrX 152036194 152036194 1 + C T BRCA 152036193 + 152036173 152036213 41 CTGGCGGCAGAGCAGCTCTCCCGAGACTCGACACTGGGTGG CTGGCGGCAGAGCAGCTCTCCTGAGACTCGACACTGGGTGG < 41bp 0.485799970409213 0.721263471373967 0.4184816 0.6077391 prediction 0.442526942747933 Functional Gain - NSDHL ENSG00000147383 CDS Human protein_coding chrX:152036193 chrX:152036194 stopgain 0.243 0 22 hm5C_associated_SNPs_119082 0 0 1 0 2 NSDHL chrX:152036217 5'GT 152036217 Upstream 24bp
chr17 47656034 47656034 1 + C T CESC 47656033 + 47656013 47656053 41 ACCACGAGGGCCAGCCCCGGCCCCGGGTGCCTCGGAAGCGG ACCACGAGGGCCAGCCCCGGCTCCGGGTGCCTCGGAAGCGG < 41bp 0.581681029813935 0.802940142048854 0.64767957 0.6876888 prediction 0.442518224469839 Functional Gain - NXPH3 ENSG00000182575 CDS Human protein_coding chr17:47656033 chr17:47656034 nonsynonymous SNV 0.886 0 22 hm5C_associated_SNPs_119083 0 0 0 0 1 NXPH3 chr17:47655958 3'AG 47655958 Downstream 77bp
chr10 44104090 44104090 1 + T G LUAD 44104087 + 44104067 44104107 41 GCTGACATTTGGGGATGTGGCTGTGGCCTTTACCCGGATTG GCTGACATTTGGGGATGTGGCTGGGGCCTTTACCCGGATTG < 41bp 0.711638953582785 0.93289509145279 0.22748959 0.872709 prediction 0.442512275740011 Functional Gain - ZNF485 ENSG00000198298 CDS Human protein_coding chr10:44104087 chr10:44104090 nonsynonymous SNV 0.977 3 24 hm5C_associated_SNPs_119087 0 0 0 0 2 ZNF485 chr10:44104062 3'AG 44104062 Downstream 29bp
chr10 44104090 44104090 1 + T G LUAD 44104087 + 44104067 44104107 41 GCTGACATTTGGGGATGTGGCTGTGGCCTTTACCCGGATTG GCTGACATTTGGGGATGTGGCTGGGGCCTTTACCCGGATTG < 41bp 0.711638953582785 0.93289509145279 0.22748959 0.872709 prediction 0.442512275740011 Functional Gain - ZNF485 ENSG00000198298 CDS Human protein_coding chr10:44104087 chr10:44104090 nonsynonymous SNV 0.977 3 24 hm5C_associated_SNPs_119087 0 0 0 0 2 ZNF485 chr10:44104188 5'GT 44104188 Upstream 99bp
chrX 134990721 134990721 1 + C A LUSC 134990720 + 134990700 134990740 41 CGTCTTGTCAAATGTTCTATCCGGGCTTATTAATATGGCAG CGTCTTGTCAAATGTTCTATCAGGGCTTATTAATATGGCAG < 41bp 0.459966866399991 0.721242571219642 0.92786527 0.94306564 prediction 0.442485142439285 Functional Gain - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134990720 chrX:134990721 synonymous SNV . 0 22 hm5C_associated_SNPs_119090 0 0 0 0 2 SAGE1 chrX:134990636 3'AG 134990636 Downstream 86bp
chrX 134990721 134990721 1 + C A LUSC 134990720 + 134990700 134990740 41 CGTCTTGTCAAATGTTCTATCCGGGCTTATTAATATGGCAG CGTCTTGTCAAATGTTCTATCAGGGCTTATTAATATGGCAG < 41bp 0.459966866399991 0.721242571219642 0.92786527 0.94306564 prediction 0.442485142439285 Functional Gain - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134990720 chrX:134990721 synonymous SNV . 0 22 hm5C_associated_SNPs_119090 0 0 0 0 2 SAGE1 chrX:134990776 5'GT 134990776 Upstream 56bp
chr7 12684228 12684228 1 + T C UCEC 12684226 + 12684206 12684246 41 CAGAGGAGTTCTGGAATTCCCTTGGAGGGAAAAAAGACTAC CAGAGGAGTTCTGGAATTCCCTCGGAGGGAAAAAAGACTAC < 41bp 0.429450666580526 0.721241950711963 0.08403462 0.11614165 prediction 0.442483901423926 Functional Gain - SCIN ENSG00000006747 CDS Human protein_coding chr7:12684226 chr7:12684228 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_119091 0 0 0 0 1 SCIN chr7:12684209 3'AG 12684209 Downstream 20bp
chr7 141408876 141408876 1 + C A LUAD 141408875 + 141408855 141408895 41 CAGCAGGAGCAAGCTGCTGCCCAGTGACAGCCCCTCTACTC CAGCAGGAGCAAGCTGCTGCCAAGTGACAGCCCCTCTACTC < 41bp 0.610922972884608 0.832160328935186 0.16784969 0.4137161 prediction 0.442474712101156 Functional Gain - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141408875 chr7:141408876 synonymous SNV . 0 22 hm5C_associated_SNPs_119092 0 0 0 0 1 WEE2 chr7:141408900 5'GT 141408900 Upstream 25bp
chr17 27047838 27047838 1 + C T BLCA 27047837 + 27047817 27047857 41 ATCCGCACGTCACCCACCTTCCGGCGGCCGAAGACACTGCG ATCCGCACGTCACCCACCTTCTGGCGGCCGAAGACACTGCG < 41bp 0.585081266253516 0.806314766327321 0.9066138 0.5477309 prediction 0.442467000147609 Functional Gain - RPL23A ENSG00000198242 CDS Human protein_coding chr17:27047837 chr17:27047838 nonsynonymous SNV 0.991 0 22 hm5C_associated_SNPs_119093 0 0 0 0 1 RPL23A chr17:27047908 5'GT 27047908 Upstream 71bp
chr16 29816260 29816260 1 + C A BLCA 29816256 + 29816236 29816276 41 GGATCTGCTGAACGAAGGCTCAGCCCGAGATCTCCGCAGTC GGATCTGCTGAACGAAGGCTCAGCACGAGATCTCCGCAGTC < 41bp 0.304268099395327 0.721230996387016 0.13538727 0.17791352 prediction 0.442461992774032 Functional Gain - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29816256 chr16:29816260 synonymous SNV . 0 25 hm5C_associated_SNPs_119094 0 0 1 0 1 KIF22 chr16:29816347 5'GT 29816347 Upstream 88bp
chr2 206610567 206610567 1 + C G OV 206610566 + 206610546 206610586 41 TATACCCGGAGAGGTGGTCGCCGGCGGGGATTGGGATGCGG TATACCCGGAGAGGTGGTCGCGGGCGGGGATTGGGATGCGG < 41bp 0.403777328909061 0.721227460828632 0.87375283 0.9105945 prediction 0.442454921657265 Functional Gain - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206610566 chr2:206610567 nonsynonymous SNV 0.345 4 22 hm5C_associated_SNPs_119095 0 0 1 0 2 NRP2 chr2:206610470 3'AG 206610470 Downstream 98bp
chr2 206610567 206610567 1 + C G OV 206610566 + 206610546 206610586 41 TATACCCGGAGAGGTGGTCGCCGGCGGGGATTGGGATGCGG TATACCCGGAGAGGTGGTCGCGGGCGGGGATTGGGATGCGG < 41bp 0.403777328909061 0.721227460828632 0.87375283 0.9105945 prediction 0.442454921657265 Functional Gain - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206610566 chr2:206610567 nonsynonymous SNV 0.345 4 22 hm5C_associated_SNPs_119095 0 0 1 0 2 NRP2 chr2:206610614 5'GT 206610614 Upstream 48bp
chr3 9971765 9971765 1 + C T UCEC 9971764 + 9971744 9971784 41 CTGTTGGAGACACGAGGCCCCCAGGACAACAGATCCCTCTG CTGTTGGAGACACGAGGCCCCTAGGACAACAGATCCCTCTG < 41bp 0.525370486178542 0.746591902428164 0.27947316 0.4025495 prediction 0.442442832499244 Functional Gain - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9971764 chr3:9971765 stopgain 0.327 0 22 hm5C_associated_SNPs_119097 0 0 0 0 2 IL17RC chr3:9971712 3'AG 9971712 Downstream 54bp
chr3 9971765 9971765 1 + C T UCEC 9971764 + 9971744 9971784 41 CTGTTGGAGACACGAGGCCCCCAGGACAACAGATCCCTCTG CTGTTGGAGACACGAGGCCCCTAGGACAACAGATCCCTCTG < 41bp 0.525370486178542 0.746591902428164 0.27947316 0.4025495 prediction 0.442442832499244 Functional Gain - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9971764 chr3:9971765 stopgain 0.327 0 22 hm5C_associated_SNPs_119097 0 0 0 0 2 IL17RC chr3:9971833 5'GT 9971833 Upstream 69bp
chr5 148626095 148626095 1 + C T COAD 148626094 + 148626074 148626114 41 GGAGAGGAGGATGATTTTGACCGCAGCATGCACAAGGTGGG GGAGAGGAGGATGATTTTGACTGCAGCATGCACAAGGTGGG < 41bp 0.5973611325851 0.818578900599431 0.2740522 0.3082478 prediction 0.442435536028661 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148626094 chr5:148626095 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_119099 0 0 0 0 2 ABLIM3 chr5:148626045 3'AG 148626045 Downstream 51bp
chr5 148626095 148626095 1 + C T COAD 148626094 + 148626074 148626114 41 GGAGAGGAGGATGATTTTGACCGCAGCATGCACAAGGTGGG GGAGAGGAGGATGATTTTGACTGCAGCATGCACAAGGTGGG < 41bp 0.5973611325851 0.818578900599431 0.2740522 0.3082478 prediction 0.442435536028661 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148626094 chr5:148626095 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_119099 0 0 0 0 2 ABLIM3 chr5:148626109 5'GT 148626109 Upstream 15bp
chr1 46650472 46650472 1 + A G BLCA 46650469 + 46650449 46650489 41 TCACCCAGGCTGAGCACTTCCTGACGTTGCTGGTAGTGCCT TCACCCAGGCTGAGCACTTCCTGGCGTTGCTGGTAGTGCCT < 41bp 0.47214997124243 0.721214162864319 0.11320248 0.34874815 prediction 0.442428325728639 Functional Gain - TSPAN1 ENSG00000117472 CDS Human protein_coding chr1:46650469 chr1:46650472 nonsynonymous SNV 0.521 0 24 hm5C_associated_SNPs_119100 0 0 0 0 2 TSPAN1 chr1:46650457 3'AG 46650457 Downstream 16bp
chr1 46650472 46650472 1 + A G BLCA 46650469 + 46650449 46650489 41 TCACCCAGGCTGAGCACTTCCTGACGTTGCTGGTAGTGCCT TCACCCAGGCTGAGCACTTCCTGGCGTTGCTGGTAGTGCCT < 41bp 0.47214997124243 0.721214162864319 0.11320248 0.34874815 prediction 0.442428325728639 Functional Gain - TSPAN1 ENSG00000117472 CDS Human protein_coding chr1:46650469 chr1:46650472 nonsynonymous SNV 0.521 0 24 hm5C_associated_SNPs_119100 0 0 0 0 2 TSPAN1 chr1:46650555 5'GT 46650555 Upstream 84bp
chr7 102110270 102110270 1 + C T COAD 102110269 + 102110249 102110289 41 CCCGGACGCCCGCCTGCTGGCCGGCTGCGAGGGCGGCTGCT CCCGGACGCCCGCCTGCTGGCTGGCTGCGAGGGCGGCTGCT < 41bp 0.523723447674012 0.744937179630972 0.19585088 0.117029876 prediction 0.44242746391392 Functional Gain - LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102110269 chr7:102110270 synonymous SNV . 0 22 hm5C_associated_SNPs_119101 0 0 1 0 2 LRWD1 chr7:102110189 3'AG 102110189 Downstream 82bp
chr7 102110270 102110270 1 + C T COAD 102110269 + 102110249 102110289 41 CCCGGACGCCCGCCTGCTGGCCGGCTGCGAGGGCGGCTGCT CCCGGACGCCCGCCTGCTGGCTGGCTGCGAGGGCGGCTGCT < 41bp 0.523723447674012 0.744937179630972 0.19585088 0.117029876 prediction 0.44242746391392 Functional Gain - LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102110269 chr7:102110270 synonymous SNV . 0 22 hm5C_associated_SNPs_119101 0 0 1 0 2 LRWD1 chr7:102110329 5'GT 102110329 Upstream 60bp
chr1 6269493 6269493 1 + C G rs199646373 6269489 + 6269469 6269509 41 CCCAGGCCGTGAAGGCCCTGCAGACGGCCACGCGGGAGGCC CCCAGGCCGTGAAGGCCCTGCAGAGGGCCACGCGGGAGGCC < 41bp 0.422117955437759 0.721212689446854 0.6853597 0.7655983 prediction 0.442425378893707 Functional Gain - RNF207 ENSG00000158286 CDS Human protein_coding chr1:6269489 chr1:6269493 nonsynonymous SNV 0.931 1 25 hm5C_associated_SNPs_119102 0 0 1 0 1 RNF207 chr1:6269474 3'AG 6269474 Downstream 20bp
chr12 132636858 132636858 1 + C T rs117703883 132636857 + 132636837 132636877 41 GGGACCTGAAGAAGAAGGGGCCCGAGCCGGTGCCACTGGAG GGGACCTGAAGAAGAAGGGGCTCGAGCCGGTGCCACTGGAG < 41bp 0.54690741886464 0.768119570787624 0.4830761 0.43748626 prediction 0.442424303845969 Functional Gain - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132636857 chr12:132636858 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_119103 0 0 1 0 1 NOC4L chr12:132636827 3'AG 132636827 Downstream 32bp
chr19 10160714 10160714 1 + T C COAD 10160712 + 10160692 10160732 41 CAAGGAGACACTGTGCAGTGCGTCAAAGCCAGGAGCACCAT CAAGGAGACACTGTGCAGTGCGCCAAAGCCAGGAGCACCAT < 41bp 0.479838237714085 0.721209795351253 0.24360055 0.116481006 prediction 0.442419590702506 Functional Gain - C3P1 ENSG00000167798 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:10160712 chr19:10160714 . . 0 23 hm5C_associated_SNPs_119105 0 0 0 0 2 C3P1 chr19:10160672 3'AG 10160672 Downstream 43bp
chr19 10160714 10160714 1 + T C COAD 10160712 + 10160692 10160732 41 CAAGGAGACACTGTGCAGTGCGTCAAAGCCAGGAGCACCAT CAAGGAGACACTGTGCAGTGCGCCAAAGCCAGGAGCACCAT < 41bp 0.479838237714085 0.721209795351253 0.24360055 0.116481006 prediction 0.442419590702506 Functional Gain - C3P1 ENSG00000167798 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:10160712 chr19:10160714 . . 0 23 hm5C_associated_SNPs_119105 0 0 0 0 2 C3P1 chr19:10160740 5'GT 10160740 Upstream 27bp
chr12 49936542 49936542 1 + C T COAD 49936541 + 49936521 49936561 41 TCCAAAGGCTTCAATGCCAACCGGCGGCGGAGCCGGGCCGT TCCAAAGGCTTCAATGCCAACTGGCGGCGGAGCCGGGCCGT < 41bp 0.54473197353427 0.765937872346012 0.81125844 0.7834546 prediction 0.442411797623484 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49936541 chr12:49936542 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_119107 0 0 0 0 2 KCNH3 chr12:49936489 3'AG 49936489 Downstream 54bp
chr12 49936542 49936542 1 + C T COAD 49936541 + 49936521 49936561 41 TCCAAAGGCTTCAATGCCAACCGGCGGCGGAGCCGGGCCGT TCCAAAGGCTTCAATGCCAACTGGCGGCGGAGCCGGGCCGT < 41bp 0.54473197353427 0.765937872346012 0.81125844 0.7834546 prediction 0.442411797623484 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49936541 chr12:49936542 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_119107 0 0 0 0 2 KCNH3 chr12:49936622 5'GT 49936622 Upstream 81bp
chr1 20680270 20680270 1 + C T rs116705730 20680269 + 20680249 20680289 41 GGTGTCTCTGCAGCTGGCCTCCGGAGCCTTCCTGCTCAACG GGTGTCTCTGCAGCTGGCCTCTGGAGCCTTCCTGCTCAACG < 41bp 0.552621573891551 0.773826403199484 0.85402817 0.026319593 prediction 0.442409658615867 Functional Gain - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20680269 chr1:20680270 synonymous SNV . 0 22 hm5C_associated_SNPs_119108 0 0 0 0 1 VWA5B1 chr1:20680250 3'AG 20680250 Downstream 21bp
chrX 48417699 48417699 1 + A G UCEC 48417696 + 48417676 48417716 41 GACCCGAGGAGTTGCGCCTGCGGATCTATCATGGCGGTGTG GACCCGAGGAGTTGCGCCTGCGGGTCTATCATGGCGGTGTG < 41bp 0.563155226527653 0.784359326339154 0.81313664 0.8697255 prediction 0.442408199623002 Functional Gain - TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48417696 chrX:48417699 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_119109 0 0 0 0 1 TBC1D25 chrX:48417734 5'GT 48417734 Upstream 36bp
chr16 58537827 58537827 1 + A G COAD 58537824 + 58537804 58537844 41 AACCGTAAGTGCAGCCCAGCCTCAGTCAGCCCTCCTCTGCC AACCGTAAGTGCAGCCCAGCCTCGGTCAGCCCTCCTCTGCC < 41bp 0.476249089439905 0.721198572853853 0.057129025 0.1674056 prediction 0.442397145707707 Functional Gain - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58537824 chr16:58537827 synonymous SNV . 0 24 hm5C_associated_SNPs_119112 0 0 0 0 1 NDRG4 chr16:58537861 5'GT 58537861 Upstream 35bp
chr7 64166764 64166764 1 + A G HNSC 64166761 + 64166741 64166781 41 AGAACATAAAAGATTCTTTCCAGAAAGTGACACTGAGAAGA AGAACATAAAAGATTCTTTCCAGGAAGTGACACTGAGAAGA < 41bp 0.526669143559038 0.747867377743052 0.10845634 0.29148638 prediction 0.442396468368027 Functional Gain - ZNF107 ENSG00000196247 CDS Human protein_coding chr7:64166761 chr7:64166764 nonsynonymous SNV 0.011 0 24 hm5C_associated_SNPs_119113 0 0 1 0 1 ZNF107 chr7:64166702 3'AG 64166702 Downstream 63bp
chr12 51189733 51189733 1 + C T UCEC 51189732 + 51189712 51189752 41 TGAGGAGTCCCAGGACTCATCCGACAGCATAGGCTCCTCAC TGAGGAGTCCCAGGACTCATCTGACAGCATAGGCTCCTCAC < 41bp 0.481923852950419 0.721197147516735 0.4280045 0.33971402 prediction 0.442394295033471 Functional Gain - ATF1 ENSG00000123268 CDS Human protein_coding chr12:51189732 chr12:51189733 synonymous SNV . 0 22 hm5C_associated_SNPs_119114 0 0 1 0 2 ATF1 chr12:51189692 3'AG 51189692 Downstream 42bp
chr12 51189733 51189733 1 + C T UCEC 51189732 + 51189712 51189752 41 TGAGGAGTCCCAGGACTCATCCGACAGCATAGGCTCCTCAC TGAGGAGTCCCAGGACTCATCTGACAGCATAGGCTCCTCAC < 41bp 0.481923852950419 0.721197147516735 0.4280045 0.33971402 prediction 0.442394295033471 Functional Gain - ATF1 ENSG00000123268 CDS Human protein_coding chr12:51189732 chr12:51189733 synonymous SNV . 0 22 hm5C_associated_SNPs_119114 0 0 1 0 2 ATF1 chr12:51189792 5'GT 51189792 Upstream 60bp
chr3 183823167 183823167 1 + C T COAD 183823166 + 183823146 183823186 41 CCTGGGCCTCAGCAAGGCCACCGCAAAGTTGTCCAGGGGAG CCTGGGCCTCAGCAAGGCCACTGCAAAGTTGTCCAGGGGAG < 41bp 0.596581055561323 0.817777613318833 0.30838326 0.843045 prediction 0.442393115515019 Functional Gain - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183823166 chr3:183823167 synonymous SNV . 0 22 hm5C_associated_SNPs_119115 0 0 0 0 1 HTR3E chr3:183823215 5'GT 183823215 Upstream 49bp
chr19 14562766 14562766 1 + C T SKCM 14562765 + 14562745 14562785 41 CCCTTCCTGAGCCGCCCAGCCCGGGGCCTTTACAGCCGAAG CCCTTCCTGAGCCGCCCAGCCTGGGGCCTTTACAGCCGAAG < 41bp 0.556139007635786 0.777334083481042 0.8861127 0.67869604 prediction 0.442390151690512 Functional Gain - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562765 chr19:14562766 nonsynonymous SNV 0.952 3 22 hm5C_associated_SNPs_119116 0 0 1 0 1 PKN1 chr19:14562835 5'GT 14562835 Upstream 70bp
chr1 46649878 46649878 1 + C A UCEC 46649877 + 46649857 46649897 41 CCCCAGCTGTGTGGTGCAGCCCTGTTGGCAGTGGGCATCTG CCCCAGCTGTGTGGTGCAGCCATGTTGGCAGTGGGCATCTG < 41bp 0.45260558520044 0.721192800212598 0.082134694 0.33763668 prediction 0.442385600425196 Functional Gain - TSPAN1 ENSG00000117472 CDS Human protein_coding chr1:46649877 chr1:46649878 nonsynonymous SNV 0.954 4 22 hm5C_associated_SNPs_119118 0 0 0 0 1 TSPAN1 chr1:46649863 3'AG 46649863 Downstream 16bp
chr1 32678154 32678154 1 + T C HNSC 32678151 + 32678131 32678171 41 GAGCTGGTAACTGGCCATTACTATGTGGCTGTCGGAGAGGA GAGCTGGTAACTGGCCATTACTACGTGGCTGTCGGAGAGGA < 41bp 0.501078116141027 0.722268002666252 0.08942807 0.13941416 prediction 0.442379773050448 Functional Gain - DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32678151 chr1:32678154 synonymous SNV . 0 24 hm5C_associated_SNPs_119120 0 0 1 0 2 DCDC2B chr1:32678091 3'AG 32678091 Downstream 64bp
chr1 32678154 32678154 1 + T C HNSC 32678151 + 32678131 32678171 41 GAGCTGGTAACTGGCCATTACTATGTGGCTGTCGGAGAGGA GAGCTGGTAACTGGCCATTACTACGTGGCTGTCGGAGAGGA < 41bp 0.501078116141027 0.722268002666252 0.08942807 0.13941416 prediction 0.442379773050448 Functional Gain - DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32678151 chr1:32678154 synonymous SNV . 0 24 hm5C_associated_SNPs_119120 0 0 1 0 2 DCDC2B chr1:32678237 5'GT 32678237 Upstream 84bp
chr7 154738434 154738434 1 - G A TGCT 154738435 - 154738415 154738455 41 TGCAGGAGGAAAGGTGTTATCCAAGCAGCCATCTTTCCGGA TGCAGGAGGAAAGGTGTTATCTAAGCAGCCATCTTTCCGGA < 41bp 0.581991346135255 0.803169304875104 0.8572111 0.46769825 prediction 0.442355917479698 Functional Gain - PAXIP1 ENSG00000157212 CDS Human protein_coding chr7:154738435 chr7:154738434 synonymous SNV . 0 22 hm5C_associated_SNPs_119123 0 0 0 0 2 PAXIP1 chr7:154738389 5'GT 154738389 Upstream 46bp
chr7 154738434 154738434 1 - G A TGCT 154738435 - 154738415 154738455 41 TGCAGGAGGAAAGGTGTTATCCAAGCAGCCATCTTTCCGGA TGCAGGAGGAAAGGTGTTATCTAAGCAGCCATCTTTCCGGA < 41bp 0.581991346135255 0.803169304875104 0.8572111 0.46769825 prediction 0.442355917479698 Functional Gain - PAXIP1 ENSG00000157212 CDS Human protein_coding chr7:154738435 chr7:154738434 synonymous SNV . 0 22 hm5C_associated_SNPs_119123 0 0 0 0 2 PAXIP1 chr7:154738523 3'AG 154738523 Downstream 90bp
chr5 54404199 54404199 1 + C T UCEC 54404198 + 54404178 54404218 41 ATGGTTTGTGCTGGAAGCCTCCGAGGTGGAAGAGACTCGTG ATGGTTTGTGCTGGAAGCCTCTGAGGTGGAAGAGACTCGTG < 41bp 0.517278212930475 0.738445310802431 0.26911312 0.21467438 prediction 0.442334195743911 Functional Gain - GZMA ENSG00000145649 CDS Human protein_coding chr5:54404198 chr5:54404199 stopgain 0.000 0 22 hm5C_associated_SNPs_119125 0 0 0 0 1 GZMA chr5:54404222 5'GT 54404222 Upstream 24bp
chr15 45266121 45266121 1 + T C LIHC 45266118 + 45266098 45266138 41 AGAAAAGCAGATGTACTTCCCTCTACAGAATTACCCAGTTA AGAAAAGCAGATGTACTTCCCTCCACAGAATTACCCAGTTA < 41bp 0.511593652996909 0.732758764576967 0.9243313 0.95704865 prediction 0.442330223160116 Functional Gain - TERB2 ENSG00000167014 CDS Human protein_coding chr15:45266118 chr15:45266121 nonsynonymous SNV 0.988 3 24 hm5C_associated_SNPs_119128 0 0 0 0 2 TERB2 chr15:45266065 3'AG 45266065 Downstream 57bp
chr15 45266121 45266121 1 + T C LIHC 45266118 + 45266098 45266138 41 AGAAAAGCAGATGTACTTCCCTCTACAGAATTACCCAGTTA AGAAAAGCAGATGTACTTCCCTCCACAGAATTACCCAGTTA < 41bp 0.511593652996909 0.732758764576967 0.9243313 0.95704865 prediction 0.442330223160116 Functional Gain - TERB2 ENSG00000167014 CDS Human protein_coding chr15:45266118 chr15:45266121 nonsynonymous SNV 0.988 3 24 hm5C_associated_SNPs_119128 0 0 0 0 2 TERB2 chr15:45266153 5'GT 45266153 Upstream 33bp
chr17 47297537 47297537 1 + C A rs76617033 47297536 + 47297516 47297556 41 CTCTCTGGTGTTCAGCAGCGCCGAAGGTGTCGGTGGGGCCC CTCTCTGGTGTTCAGCAGCGCAGAAGGTGTCGGTGGGGCCC < 41bp 0.601066319421799 0.822221400961003 0.33647212 0.55113095 prediction 0.442310163078408 Functional Gain - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47297536 chr17:47297537 synonymous SNV . 0 22 hm5C_associated_SNPs_119132 0 0 0 0 1 ABI3 chr17:47297531 3'AG 47297531 Downstream 7bp
chr16 817386 817386 1 + C T SKCM 817385 + 817365 817405 41 CCGGCGGGCAGGTGGGGCCCCCACGGAGGATTTGAAGGCGC CCGGCGGGCAGGTGGGGCCCCTACGGAGGATTTGAAGGCGC < 41bp 0.489548280861201 0.721154995076446 0.85322064 0.89958096 prediction 0.442309990152892 Functional Gain - MSLN ENSG00000102854 CDS Human protein_coding chr16:817385 chr16:817386 synonymous SNV . 0 22 hm5C_associated_SNPs_119133 0 0 0 0 2 MSLN chr16:817376 3'AG 817376 Downstream 11bp
chr16 817386 817386 1 + C T SKCM 817385 + 817365 817405 41 CCGGCGGGCAGGTGGGGCCCCCACGGAGGATTTGAAGGCGC CCGGCGGGCAGGTGGGGCCCCTACGGAGGATTTGAAGGCGC < 41bp 0.489548280861201 0.721154995076446 0.85322064 0.89958096 prediction 0.442309990152892 Functional Gain - MSLN ENSG00000102854 CDS Human protein_coding chr16:817385 chr16:817386 synonymous SNV . 0 22 hm5C_associated_SNPs_119133 0 0 0 0 2 MSLN chr16:817470 5'GT 817470 Upstream 85bp
chrX 591832 591832 1 + C A UCEC 591831 + 591811 591851 41 CGGAGGGCGGCGGCCACTGCCCGGTGCATTTGTTCAAGGAC CGGAGGGCGGCGGCCACTGCCAGGTGCATTTGTTCAAGGAC < 41bp 0.447716103707004 0.721153901029891 0.4070347 0.9181937 prediction 0.442307802059782 Functional Gain - SHOX ENSG00000185960 CDS Human protein_coding chrX:591831 chrX:591832 nonsynonymous SNV 0.824 4 22 hm5C_associated_SNPs_119134 0 0 0 0 1 SHOX chrX:591909 5'GT 591909 Upstream 78bp
chr5 176794791 176794791 1 + C T KIRC 176794790 + 176794770 176794810 41 AGCTGCCACCCGTTGAGGGTCCTGGGGGCCGCCCTCTCCGC AGCTGCCACCCGTTGAGGGTCTTGGGGGCCGCCCTCTCCGC < 41bp 0.559269005173805 0.780421302989011 0.86607975 0.8455215 prediction 0.442304595630413 Functional Gain - RGS14 ENSG00000169220 CDS Human protein_coding chr5:176794790 chr5:176794791 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_119135 0 0 1 0 2 RGS14 chr5:176794715 3'AG 176794715 Downstream 77bp
chr5 176794791 176794791 1 + C T KIRC 176794790 + 176794770 176794810 41 AGCTGCCACCCGTTGAGGGTCCTGGGGGCCGCCCTCTCCGC AGCTGCCACCCGTTGAGGGTCTTGGGGGCCGCCCTCTCCGC < 41bp 0.559269005173805 0.780421302989011 0.86607975 0.8455215 prediction 0.442304595630413 Functional Gain - RGS14 ENSG00000169220 CDS Human protein_coding chr5:176794790 chr5:176794791 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_119135 0 0 1 0 2 RGS14 chr5:176794826 5'GT 176794826 Upstream 36bp
chr19 39871332 39871332 1 + C T GBM 39871331 + 39871311 39871351 41 GCCTCCCCGGGCCCTCCCACCCGGCCGGATGGGCCTCCTGA GCCTCCCCGGGCCCTCCCACCTGGCCGGATGGGCCTCCTGA < 41bp 0.567456775060438 0.788600989497253 0.30231118 0.28619683 prediction 0.442288428873629 Functional Gain - SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39871331 chr19:39871332 synonymous SNV . 0 22 hm5C_associated_SNPs_119138 0 0 1 0 1 SAMD4B chr19:39871425 5'GT 39871425 Upstream 94bp
chr19 50909475 50909475 1 + C A COAD 50909471 + 50909451 50909491 41 CCTTTCCTGGGCCGTGTGGCCGGCCTTTGCTCCAACATCCG CCTTTCCTGGGCCGTGTGGCCGGCATTTGCTCCAACATCCG < 41bp 0.302446120548118 0.721143457692402 0.09778157 0.13357455 prediction 0.442286915384805 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50909471 chr19:50909475 nonsynonymous SNV 0.991 0 25 hm5C_associated_SNPs_119139 0 0 1 0 1 POLD1 chr19:50909439 3'AG 50909439 Downstream 37bp
chr6 18215282 18215282 1 + C A rs144521010 18215278 + 18215258 18215298 41 GTCTGTGATTGCCGGGGAGGCTGTCGCATCCGTGAGGACCC GTCTGTGATTGCCGGGGAGGCTGTAGCATCCGTGAGGACCC < 41bp 0.300030536118823 0.72114047236467 0.31880534 0.29573572 prediction 0.44228094472934 Functional Gain - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18215278 chr6:18215282 synonymous SNV . 0 25 hm5C_associated_SNPs_119140 0 0 1 0 2 KDM1B chr6:18215238 3'AG 18215238 Downstream 45bp
chr6 18215282 18215282 1 + C A rs144521010 18215278 + 18215258 18215298 41 GTCTGTGATTGCCGGGGAGGCTGTCGCATCCGTGAGGACCC GTCTGTGATTGCCGGGGAGGCTGTAGCATCCGTGAGGACCC < 41bp 0.300030536118823 0.72114047236467 0.31880534 0.29573572 prediction 0.44228094472934 Functional Gain - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18215278 chr6:18215282 synonymous SNV . 0 25 hm5C_associated_SNPs_119140 0 0 1 0 2 KDM1B chr6:18215360 5'GT 18215360 Upstream 79bp
chr4 119472291 119472291 1 + C T SKCM 119472290 + 119472270 119472310 41 CATAGAAAGCAAATTAAGAGCCGAAAGTGAAGTCCCTATTG CATAGAAAGCAAATTAAGAGCTGAAAGTGAAGTCCCTATTG < 41bp 0.527611047907199 0.748751491769852 0.102151275 0.1758275 prediction 0.442280887725306 Functional Gain - CEP170P1 ENSG00000154608 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr4:119472290 chr4:119472291 . . 0 22 hm5C_associated_SNPs_119141 0 0 0 0 2 CEP170P1 chr4:119472234 3'AG 119472234 Downstream 58bp
chr4 119472291 119472291 1 + C T SKCM 119472290 + 119472270 119472310 41 CATAGAAAGCAAATTAAGAGCCGAAAGTGAAGTCCCTATTG CATAGAAAGCAAATTAAGAGCTGAAAGTGAAGTCCCTATTG < 41bp 0.527611047907199 0.748751491769852 0.102151275 0.1758275 prediction 0.442280887725306 Functional Gain - CEP170P1 ENSG00000154608 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr4:119472290 chr4:119472291 . . 0 22 hm5C_associated_SNPs_119141 0 0 0 0 2 CEP170P1 chr4:119472327 5'GT 119472327 Upstream 37bp
chr17 33475325 33475325 1 + C T SARC 33475324 + 33475304 33475344 41 CAGCTGAAGGAGGAAGGAAACCGGCATTTCCAGCTCCAGGA CAGCTGAAGGAGGAAGGAAACTGGCATTTCCAGCTCCAGGA < 41bp 0.534670407084606 0.755809021282488 0.39605236 0.27899218 prediction 0.442277228395763 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33475324 chr17:33475325 nonsynonymous SNV 0.976 1 22 hm5C_associated_SNPs_119142 0 0 0 0 1 UNC45B chr17:33475280 3'AG 33475280 Downstream 46bp
chr15 22999429 22999429 1 + C A UCEC 22999428 + 22999408 22999448 41 GAGGTCATCCTGACACGGATCCGGAGCTTTCTGGATGACCC GAGGTCATCCTGACACGGATCAGGAGCTTTCTGGATGACCC < 41bp 0.590956694768928 0.812091149566087 0.7220746 0.80306566 prediction 0.442268909594318 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:22999428 chr15:22999429 synonymous SNV . 0 22 hm5C_associated_SNPs_119144 0 0 1 0 1 CYFIP1 chr15:22999339 3'AG 22999339 Downstream 91bp
chr14 90736635 90736635 1 + A G UCEC 90736632 + 90736612 90736652 41 CACAAGCAGGATGACGCTGGCTGATGATGTAACCCTGGACG CACAAGCAGGATGACGCTGGCTGGTGATGTAACCCTGGACG < 41bp 0.481477174094627 0.721133037223299 0.121347785 0.44737375 prediction 0.442266074446599 Functional Gain - PSMC1 ENSG00000100764 CDS Human protein_coding chr14:90736632 chr14:90736635 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_119145 0 0 0 0 2 PSMC1 chr14:90736542 3'AG 90736542 Downstream 94bp
chr14 90736635 90736635 1 + A G UCEC 90736632 + 90736612 90736652 41 CACAAGCAGGATGACGCTGGCTGATGATGTAACCCTGGACG CACAAGCAGGATGACGCTGGCTGGTGATGTAACCCTGGACG < 41bp 0.481477174094627 0.721133037223299 0.121347785 0.44737375 prediction 0.442266074446599 Functional Gain - PSMC1 ENSG00000100764 CDS Human protein_coding chr14:90736632 chr14:90736635 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_119145 0 0 0 0 2 PSMC1 chr14:90736696 5'GT 90736696 Upstream 62bp
chr1 29618465 29618465 1 + A G LUSC 29618462 + 29618442 29618482 41 AGCGCCGTGGACCGCAGCTTCACAGACCAGAGCACCCTGCA AGCGCCGTGGACCGCAGCTTCACGGACCAGAGCACCCTGCA < 41bp 0.478167408270537 0.721129297352854 0.1430301 0.62018144 prediction 0.442258594705708 Functional Gain - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29618462 chr1:29618465 synonymous SNV . 0 24 hm5C_associated_SNPs_119150 0 0 1 0 2 PTPRU chr1:29618381 3'AG 29618381 Downstream 85bp
chr1 29618465 29618465 1 + A G LUSC 29618462 + 29618442 29618482 41 AGCGCCGTGGACCGCAGCTTCACAGACCAGAGCACCCTGCA AGCGCCGTGGACCGCAGCTTCACGGACCAGAGCACCCTGCA < 41bp 0.478167408270537 0.721129297352854 0.1430301 0.62018144 prediction 0.442258594705708 Functional Gain - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29618462 chr1:29618465 synonymous SNV . 0 24 hm5C_associated_SNPs_119150 0 0 1 0 2 PTPRU chr1:29618538 5'GT 29618538 Upstream 74bp
chr3 108568055 108568055 1 + C G LUSC 108568051 + 108568031 108568071 41 GCTATGAACAAATGAAAGCCCGACCAGAGAAATCTGTAAAT GCTATGAACAAATGAAAGCCCGACGAGAGAAATCTGTAAAT < 41bp 0.438425910862338 0.721128760874947 0.08840424 0.20849347 prediction 0.442257521749895 Functional Gain - TRAT1 ENSG00000163519 CDS Human protein_coding chr3:108568051 chr3:108568055 nonsynonymous SNV 0.833 4 25 hm5C_associated_SNPs_119151 0 0 0 0 2 TRAT1 chr3:108568013 3'AG 108568013 Downstream 43bp
chr3 108568055 108568055 1 + C G LUSC 108568051 + 108568031 108568071 41 GCTATGAACAAATGAAAGCCCGACCAGAGAAATCTGTAAAT GCTATGAACAAATGAAAGCCCGACGAGAGAAATCTGTAAAT < 41bp 0.438425910862338 0.721128760874947 0.08840424 0.20849347 prediction 0.442257521749895 Functional Gain - TRAT1 ENSG00000163519 CDS Human protein_coding chr3:108568051 chr3:108568055 nonsynonymous SNV 0.833 4 25 hm5C_associated_SNPs_119151 0 0 0 0 2 TRAT1 chr3:108568101 5'GT 108568101 Upstream 47bp
chr20 43034742 43034742 1 + C A BLCA 43034741 + 43034721 43034761 41 AACCTCAACGCGCCCAACAGCCTGGGTGTCAGCGCCCTGTG AACCTCAACGCGCCCAACAGCATGGGTGTCAGCGCCCTGTG < 41bp 0.603469022464926 0.824595907239366 0.1997712 0.84549904 prediction 0.44225376954888 Functional Gain - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43034741 chr20:43034742 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_119152 0 0 0 0 1 HNF4A chr20:43034698 3'AG 43034698 Downstream 45bp
chr19 36033430 36033430 1 + C T rs150278933 36033429 + 36033409 36033449 41 TGCTCAACGTGTGGTCATCTCCGCGCCCTCACCGGATGCAC TGCTCAACGTGTGGTCATCTCTGCGCCCTCACCGGATGCAC < 41bp 0.583022299518261 0.804139840185833 0.36583716 0.21774009 prediction 0.442235081335145 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36033429 chr19:36033430 synonymous SNV . 0 22 hm5C_associated_SNPs_119155 0 0 0 0 2 GAPDHS chr19:36033392 3'AG 36033392 Downstream 39bp
chr19 36033430 36033430 1 + C T rs150278933 36033429 + 36033409 36033449 41 TGCTCAACGTGTGGTCATCTCCGCGCCCTCACCGGATGCAC TGCTCAACGTGTGGTCATCTCTGCGCCCTCACCGGATGCAC < 41bp 0.583022299518261 0.804139840185833 0.36583716 0.21774009 prediction 0.442235081335145 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36033429 chr19:36033430 synonymous SNV . 0 22 hm5C_associated_SNPs_119155 0 0 0 0 2 GAPDHS chr19:36033510 5'GT 36033510 Upstream 81bp
chr5 10461461 10461461 1 + A G SKCM 10461458 + 10461438 10461478 41 CGGAATCCTACCTTGCCTCTCTAAAGGAAAATATGTAAGTA CGGAATCCTACCTTGCCTCTCTAGAGGAAAATATGTAAGTA < 41bp 0.481048261437821 0.721114481678522 0.085894585 0.26394355 prediction 0.442228963357045 Functional Gain - ROPN1L ENSG00000145491 CDS Human protein_coding chr5:10461458 chr5:10461461 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_119157 0 0 0 0 1 ROPN1L chr5:10461471 5'GT 10461471 Upstream 11bp
chrX 68059564 68059564 1 + C G UCEC 68059560 + 68059540 68059580 41 ACCGGGAGGGCGGTGTGTGCCGCACACGCACCATGAAGATC ACCGGGAGGGCGGTGTGTGCCGCAGACGCACCATGAAGATC < 41bp 0.422722308200305 0.721101101658299 0.053926826 0.40876114 prediction 0.442202203316599 Functional Gain - EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059560 chrX:68059564 nonsynonymous SNV 0.947 3 25 hm5C_associated_SNPs_119159 0 0 0 0 2 EFNB1 chrX:68059507 3'AG 68059507 Downstream 58bp
chrX 68059564 68059564 1 + C G UCEC 68059560 + 68059540 68059580 41 ACCGGGAGGGCGGTGTGTGCCGCACACGCACCATGAAGATC ACCGGGAGGGCGGTGTGTGCCGCAGACGCACCATGAAGATC < 41bp 0.422722308200305 0.721101101658299 0.053926826 0.40876114 prediction 0.442202203316599 Functional Gain - EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059560 chrX:68059564 nonsynonymous SNV 0.947 3 25 hm5C_associated_SNPs_119159 0 0 0 0 2 EFNB1 chrX:68059599 5'GT 68059599 Upstream 36bp
chr5 126774170 126774170 1 + C A rs147731088 126774166 + 126774146 126774186 41 ACTGGGGCCCAAACTGCATCCACACGTGCAACTGCCATAAT ACTGGGGCCCAAACTGCATCCACAAGTGCAACTGCCATAAT < 41bp 0.290867778142765 0.721099685977553 0.06127885 0.05990854 prediction 0.442199371955106 Functional Gain - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126774166 chr5:126774170 nonsynonymous SNV 0.955 2 25 hm5C_associated_SNPs_119160 0 0 0 0 1 MEGF10 chr5:126774131 3'AG 126774131 Downstream 40bp
chr11 134151937 134151937 1 + C T UCEC 134151936 + 134151916 134151956 41 TAGGGCCTTCGTCCTGATGGCCGCAGAGATCGGGCTGTGGG TAGGGCCTTCGTCCTGATGGCTGCAGAGATCGGGCTGTGGG < 41bp 0.591031724009983 0.812131174838862 0.33490664 0.2995242 prediction 0.442198901657759 Functional Gain - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134151936 chr11:134151937 synonymous SNV . 0 22 hm5C_associated_SNPs_119161 0 0 0 0 2 GLB1L3 chr11:134151919 3'AG 134151919 Downstream 19bp
chr11 134151937 134151937 1 + C T UCEC 134151936 + 134151916 134151956 41 TAGGGCCTTCGTCCTGATGGCCGCAGAGATCGGGCTGTGGG TAGGGCCTTCGTCCTGATGGCTGCAGAGATCGGGCTGTGGG < 41bp 0.591031724009983 0.812131174838862 0.33490664 0.2995242 prediction 0.442198901657759 Functional Gain - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134151936 chr11:134151937 synonymous SNV . 0 22 hm5C_associated_SNPs_119161 0 0 0 0 2 GLB1L3 chr11:134152014 5'GT 134152014 Upstream 78bp
chr1 205036303 205036303 1 + C T UVM 205036302 + 205036282 205036322 41 CCCTGGATGGACTATGAGTTCCGGGTCATAGCCAGCAACAT CCCTGGATGGACTATGAGTTCTGGGTCATAGCCAGCAACAT < 41bp 0.581412498558676 0.802511308748446 0.42438066 0.07280016 prediction 0.442197620379539 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205036302 chr1:205036303 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_119162 0 0 0 0 2 CNTN2 chr1:205036229 3'AG 205036229 Downstream 75bp
chr1 205036303 205036303 1 + C T UVM 205036302 + 205036282 205036322 41 CCCTGGATGGACTATGAGTTCCGGGTCATAGCCAGCAACAT CCCTGGATGGACTATGAGTTCTGGGTCATAGCCAGCAACAT < 41bp 0.581412498558676 0.802511308748446 0.42438066 0.07280016 prediction 0.442197620379539 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205036302 chr1:205036303 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_119162 0 0 0 0 2 CNTN2 chr1:205036378 5'GT 205036378 Upstream 76bp
chr17 40936583 40936583 1 + C T STAD 40936582 + 40936562 40936602 41 CAGAATGCCGCGCAAATCTACCGCAAGGTCACTTCGGTGAG CAGAATGCCGCGCAAATCTACTGCAAGGTCACTTCGGTGAG < 41bp 0.46122813890331 0.721090485605769 0.17998055 0.7703785 prediction 0.442180971211539 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40936582 chr17:40936583 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_119165 0 0 0 0 1 WNK4 chr17:40936597 5'GT 40936597 Upstream 15bp
chrX 38226586 38226586 1 + T C COAD 38226584 + 38226564 38226604 41 ATAAAGTGCAGCTGAAGGGCCGTGACCTTCTCACTCTAAAA ATAAAGTGCAGCTGAAGGGCCGCGACCTTCTCACTCTAAAA < 41bp 0.435650976249602 0.721090151488797 0.055306047 0.038340986 prediction 0.442180302977593 Functional Gain - OTC ENSG00000036473 CDS Human protein_coding chrX:38226584 chrX:38226586 synonymous SNV . 0 23 hm5C_associated_SNPs_119166 0 0 0 0 2 OTC chrX:38226544 3'AG 38226544 Downstream 43bp
chrX 38226586 38226586 1 + T C COAD 38226584 + 38226564 38226604 41 ATAAAGTGCAGCTGAAGGGCCGTGACCTTCTCACTCTAAAA ATAAAGTGCAGCTGAAGGGCCGCGACCTTCTCACTCTAAAA < 41bp 0.435650976249602 0.721090151488797 0.055306047 0.038340986 prediction 0.442180302977593 Functional Gain - OTC ENSG00000036473 CDS Human protein_coding chrX:38226584 chrX:38226586 synonymous SNV . 0 23 hm5C_associated_SNPs_119166 0 0 0 0 2 OTC chrX:38226682 5'GT 38226682 Upstream 97bp
chr20 62848494 62848494 1 + C T UCEC 62848493 + 62848473 62848513 41 CCAACGTGGCCCCCGCCACACCCAGGGCCAACTTGGCCAAG CCAACGTGGCCCCCGCCACACTCAGGGCCAACTTGGCCAAG < 41bp 0.454995059691082 0.721082268306246 0.019483477 0.016426802 prediction 0.442164536612493 Functional Gain - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62848493 chr20:62848494 nonsynonymous SNV 0.951 3 22 hm5C_associated_SNPs_119170 0 0 0 0 1 MYT1 chr20:62848420 3'AG 62848420 Downstream 75bp
chr9 846966 846966 1 + C A SKCM 846965 + 846945 846985 41 GTCGTGTGCTTCCAGGTGGCCCTGAGAAGGCAGCAGGCCCA GTCGTGTGCTTCCAGGTGGCCATGAGAAGGCAGCAGGCCCA < 41bp 0.459805778317307 0.721082197081663 0.5699469 0.8482977 prediction 0.442164394163326 Functional Gain - DMRT1 ENSG00000137090 CDS Human protein_coding chr9:846965 chr9:846966 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_119171 0 0 0 0 1 DMRT1 chr9:846960 3'AG 846960 Downstream 7bp
chr19 39871317 39871317 1 + C G rs369647211 39871313 + 39871293 39871333 41 CCAGCGGCAGTTCCCAATGCCTCCCCGGGCCCTCCCACCCG CCAGCGGCAGTTCCCAATGCCTCCGCGGGCCCTCCCACCCG < 41bp 0.624745079418846 0.845827168338219 0.25193393 0.7478728 prediction 0.442164177838746 Functional Gain - SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39871313 chr19:39871317 synonymous SNV . 0 25 hm5C_associated_SNPs_119172 0 0 1 0 1 SAMD4B chr19:39871227 3'AG 39871227 Downstream 91bp
chr8 42958731 42958731 1 + C T SKCM 42958730 + 42958710 42958750 41 AACAGCAGGAGAGGCCTCGCCCCCCGAGAGGTGCCGCCAGC AACAGCAGGAGAGGCCTCGCCTCCCGAGAGGTGCCGCCAGC < 41bp 0.46412054752354 0.721077566737091 0.09049258 0.35254788 prediction 0.442155133474182 Functional Gain - POMK ENSG00000185900 CDS Human protein_coding chr8:42958730 chr8:42958731 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_119173 0 0 1 0 1 POMK chr8:42958671 3'AG 42958671 Downstream 61bp
chr11 62554021 62554021 1 + C A COAD 62554020 + 62554000 62554040 41 GCGACTGCTGAAGATGAAGGCCCAGGCAGCAGAGCCCAACA GCGACTGCTGAAGATGAAGGCACAGGCAGCAGAGCCCAACA < 41bp 0.460931701000095 0.721076830999717 0.3544317 0.36786163 prediction 0.442153661999434 Functional Gain - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62554020 chr11:62554021 synonymous SNV . 0 22 hm5C_associated_SNPs_119174 0 0 0 0 1 TAF6L chr11:62553989 3'AG 62553989 Downstream 33bp
chr6 41899507 41899507 1 + C T LUSC 41899506 + 41899486 41899526 41 GAGTCTGGCACTTGTACCCTCCGGGAAGCCATCATTGTGGG GAGTCTGGCACTTGTACCCTCTGGGAAGCCATCATTGTGGG < 41bp 0.577577027263769 0.798651249587949 0.33440417 0.2779742 prediction 0.44214844464836 Functional Gain - BYSL ENSG00000112578 CDS Human protein_coding chr6:41899506 chr6:41899507 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_119176 0 0 1 0 2 BYSL chr6:41899466 3'AG 41899466 Downstream 42bp
chr6 41899507 41899507 1 + C T LUSC 41899506 + 41899486 41899526 41 GAGTCTGGCACTTGTACCCTCCGGGAAGCCATCATTGTGGG GAGTCTGGCACTTGTACCCTCTGGGAAGCCATCATTGTGGG < 41bp 0.577577027263769 0.798651249587949 0.33440417 0.2779742 prediction 0.44214844464836 Functional Gain - BYSL ENSG00000112578 CDS Human protein_coding chr6:41899506 chr6:41899507 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_119176 0 0 1 0 2 BYSL chr6:41899568 5'GT 41899568 Upstream 62bp
chr7 50599569 50599569 1 + C A rs73123254 50599565 + 50599545 50599585 41 GCAGACAAAGGTTGCCATGGCAAGCCTGCTCAGGAGGTAGG GCAGACAAAGGTTGCCATGGCAAGACTGCTCAGGAGGTAGG < 41bp 0.369722101053334 0.721071574643961 0.3088157 0.43130004 prediction 0.442143149287923 Functional Gain - DDC-AS1 ENSG00000226122 ncRNA_exonic Human antisense chr7:50599565 chr7:50599569 . . 0 25 hm5C_associated_SNPs_119177 0 0 0 0 1 DDC-AS1 chr7:50599580 5'GT 50599580 Upstream 12bp
chr9 137712043 137712043 1 - G A COAD 137712044 - 137712024 137712064 41 CTCCCTTAGGACCGGAGGAGCCCTGGGGGCCAGGGAGACCA CTCCCTTAGGACCGGAGGAGCTCTGGGGGCCAGGGAGACCA < 41bp 0.471982304391558 0.721066732680905 0.16896337 0.22692657 prediction 0.44213346536181 Functional Gain - COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137712044 chr9:137712043 nonsynonymous SNV 0.838 4 22 hm5C_associated_SNPs_119179 0 0 0 0 1 COL5A1 chr9:137712055 3'AG 137712055 Downstream 13bp
chr19 17337066 17337066 1 + C A rs116007369 17337062 + 17337042 17337082 41 TCCATCCTGCAGTAAATGCACAACCCGGACGGAAGTGCCTC TCCATCCTGCAGTAAATGCACAACACGGACGGAAGTGCCTC < 41bp 0.337751152527031 0.721061064844441 0.037625283 0.07970649 prediction 0.442122129688882 Functional Gain - OCEL1 ENSG00000099330 CDS Human protein_coding chr19:17337062 chr19:17337066 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_119180 0 0 0 0 1 OCEL1 chr19:17337125 5'GT 17337125 Upstream 60bp
chr9 135866330 135866330 1 + C T UCEC 135866329 + 135866309 135866349 41 TCCAACCTCATCACCCACAGCCGCAAGCACACAGGCTTCAA TCCAACCTCATCACCCACAGCTGCAAGCACACAGGCTTCAA < 41bp 0.46662150489124 0.721058831441375 0.21667695 0.30426913 prediction 0.442117662882751 Functional Gain - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135866329 chr9:135866330 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_119181 0 0 0 0 1 GFI1B chr9:135866259 3'AG 135866259 Downstream 72bp
chr7 44806178 44806178 1 + T A LUSC 44806174 + 44806154 44806194 41 CCAAGCGAGCTTAGGACCTACGGGTGAACTGGCCTTCAGTC CCAAGCGAGCTTAGGACCTACGGGAGAACTGGCCTTCAGTC < 41bp 0.659517287540778 0.880568014269202 0.89324266 0.9083776 prediction 0.442101453456848 Functional Gain - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806174 chr7:44806178 synonymous SNV . 0 25 hm5C_associated_SNPs_119185 0 0 1 0 1 ZMIZ2 chr7:44806262 5'GT 44806262 Upstream 85bp
chrX 2945389 2945389 1 + C T rs146832237 2945388 + 2945368 2945408 41 GGAGGATGGGAAGGAGGTATCCGTGTGCCAGGGATATTCCG GGAGGATGGGAAGGAGGTATCTGTGTGCCAGGGATATTCCG < 41bp 0.48056431727079 0.721050099646873 0.84504193 0.6282668 prediction 0.442100199293747 Functional Gain - ARSH ENSG00000205667 CDS Human protein_coding chrX:2945388 chrX:2945389 nonsynonymous SNV 0.920 4 22 hm5C_associated_SNPs_119186 0 0 0 0 1 ARSH chrX:2945354 3'AG 2945354 Downstream 36bp
chr3 46939390 46939390 1 + T A ESCA 46939386 + 46939366 46939406 41 GGGACCACATCCTGTGCTGGCCGCTGGGGGCACCAGGTGAG GGGACCACATCCTGTGCTGGCCGCAGGGGGCACCAGGTGAG < 41bp 0.387180093651931 0.72104826225563 0.3476892 0.3595109 prediction 0.44209652451126 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46939386 chr3:46939390 nonsynonymous SNV 0.978 0 25 hm5C_associated_SNPs_119187 0 0 0 0 2 PTH1R chr3:46939345 3'AG 46939345 Downstream 46bp
chr3 46939390 46939390 1 + T A ESCA 46939386 + 46939366 46939406 41 GGGACCACATCCTGTGCTGGCCGCTGGGGGCACCAGGTGAG GGGACCACATCCTGTGCTGGCCGCAGGGGGCACCAGGTGAG < 41bp 0.387180093651931 0.72104826225563 0.3476892 0.3595109 prediction 0.44209652451126 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46939386 chr3:46939390 nonsynonymous SNV 0.978 0 25 hm5C_associated_SNPs_119187 0 0 0 0 2 PTH1R chr3:46939455 5'GT 46939455 Upstream 66bp
chr12 110390965 110390965 1 - A T UCEC 110390969 - 110390949 110390989 41 AGTCAAGACAACGATCAGCCCGACTATGACAGCGTGGCATC AGTCAAGACAACGATCAGCCCGACAATGACAGCGTGGCATC < 41bp 0.385655096754374 0.721047898248304 0.061361462 0.074223965 prediction 0.442095796496607 Functional Gain - GIT2 ENSG00000139436 CDS Human protein_coding chr12:110390969 chr12:110390965 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_119188 0 0 1 0 2 GIT2 chr12:110390897 5'GT 110390897 Upstream 69bp
chr12 110390965 110390965 1 - A T UCEC 110390969 - 110390949 110390989 41 AGTCAAGACAACGATCAGCCCGACTATGACAGCGTGGCATC AGTCAAGACAACGATCAGCCCGACAATGACAGCGTGGCATC < 41bp 0.385655096754374 0.721047898248304 0.061361462 0.074223965 prediction 0.442095796496607 Functional Gain - GIT2 ENSG00000139436 CDS Human protein_coding chr12:110390969 chr12:110390965 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_119188 0 0 1 0 2 GIT2 chr12:110391039 3'AG 110391039 Downstream 75bp
chr17 16285278 16285278 1 + C T rs151174232 16285277 + 16285257 16285297 41 CATCACCCTTGAGGTGGAGCCCAGTGACACCATCGAAAATG CATCACCCTTGAGGTGGAGCCTAGTGACACCATCGAAAATG < 41bp 0.488249332041357 0.721041619289994 0.25521356 0.21207103 prediction 0.442083238579987 Functional Gain - UBB ENSG00000170315 CDS Human protein_coding chr17:16285277 chr17:16285278 synonymous SNV . 0 22 hm5C_associated_SNPs_119189 0 0 1 0 1 UBB chr17:16285216 3'AG 16285216 Downstream 63bp
chr3 99513110 99513110 1 + C T SKCM 99513109 + 99513089 99513129 41 GTTTACGAGGGGAACAAGGTCCCCGTGGAGAGCCTGGCCCA GTTTACGAGGGGAACAAGGTCTCCGTGGAGAGCCTGGCCCA < 41bp 0.594541220745427 0.815577061716852 0.47255194 0.48694524 prediction 0.442071681942848 Functional Gain - COL8A1 ENSG00000144810 CDS Human protein_coding chr3:99513109 chr3:99513110 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_119190 0 0 0 0 2 MIR548G chr3:99513071 3'AG 99513071 Downstream 40bp
chr3 99513110 99513110 1 + C T SKCM 99513109 + 99513089 99513129 41 GTTTACGAGGGGAACAAGGTCCCCGTGGAGAGCCTGGCCCA GTTTACGAGGGGAACAAGGTCTCCGTGGAGAGCCTGGCCCA < 41bp 0.594541220745427 0.815577061716852 0.47255194 0.48694524 prediction 0.442071681942848 Functional Gain - COL8A1 ENSG00000144810 CDS Human protein_coding chr3:99513109 chr3:99513110 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_119190 0 0 0 0 2 COL8A1 chr3:99513074 3'AG 99513074 Downstream 37bp
chr16 84482190 84482190 1 + T C UCEC 84482187 + 84482167 84482207 41 GGGCCTTGGAAGAGGTGATCCGCTACTGCACCATGTACAAC GGGCCTTGGAAGAGGTGATCCGCCACTGCACCATGTACAAC < 41bp 0.517014925103096 0.738050246241789 0.1489766 0.20836559 prediction 0.442070642277386 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84482187 chr16:84482190 nonsynonymous SNV 0.116 1 24 hm5C_associated_SNPs_119192 0 0 0 0 1 ATP2C2 chr16:84482139 3'AG 84482139 Downstream 52bp
chr12 31236915 31236915 1 + C A GBM 31236911 + 31236891 31236931 41 TCCTGCGAAGGGGCTGCAGGCACCCCGAGGCCTGCTGGAGA TCCTGCGAAGGGGCTGCAGGCACCACGAGGCCTGCTGGAGA < 41bp 0.321129813389483 0.721035069754373 0.1993567 0.31538087 prediction 0.442070139508746 Functional Gain - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31236911 chr12:31236915 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_119193 0 0 1 0 1 DDX11 chr12:31236995 5'GT 31236995 Upstream 81bp
chr14 67768720 67768720 1 + A G rs142805397 67768717 + 67768697 67768737 41 ACTGGCCCACGATAAGGTTGCTGAGCAGGAAATGCAGCTAG ACTGGCCCACGATAAGGTTGCTGGGCAGGAAATGCAGCTAG < 41bp 0.546714450876883 0.767749198611231 0.4267789 0.72517467 prediction 0.442069495468695 Functional Gain - MPP5 ENSG00000072415 CDS Human protein_coding chr14:67768717 chr14:67768720 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_119194 0 0 1 0 1 MPP5 chr14:67768689 3'AG 67768689 Downstream 32bp
chr17 4846537 4846537 1 + A G THYM 4846534 + 4846514 4846554 41 GGCTATTACCTCATCCCTTTCACAGGGATTGTGGGACTGCT GGCTATTACCTCATCCCTTTCACGGGGATTGTGGGACTGCT < 41bp 0.562022052518522 0.783054089424017 0.052453905 0.26445317 prediction 0.44206407381099 Functional Gain - RNF167 ENSG00000108523 CDS Human protein_coding chr17:4846534 chr17:4846537 synonymous SNV . 0 24 hm5C_associated_SNPs_119195 0 0 1 0 2 RNF167 chr17:4846474 3'AG 4846474 Downstream 64bp
chr17 4846537 4846537 1 + A G THYM 4846534 + 4846514 4846554 41 GGCTATTACCTCATCCCTTTCACAGGGATTGTGGGACTGCT GGCTATTACCTCATCCCTTTCACGGGGATTGTGGGACTGCT < 41bp 0.562022052518522 0.783054089424017 0.052453905 0.26445317 prediction 0.44206407381099 Functional Gain - RNF167 ENSG00000108523 CDS Human protein_coding chr17:4846534 chr17:4846537 synonymous SNV . 0 24 hm5C_associated_SNPs_119195 0 0 1 0 2 RNF167 chr17:4846579 5'GT 4846579 Upstream 43bp
chr22 50957725 50957725 1 + C T SKCM 50957724 + 50957704 50957744 41 CCCCAAGGCCGCTCTGGAGCCCAAGGAGTCCAGGAGCCCGC CCCCAAGGCCGCTCTGGAGCCTAAGGAGTCCAGGAGCCCGC < 41bp 0.562900252611987 0.783930505700009 0.21282375 0.1795052 prediction 0.442060506176045 Functional Gain - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50957724 chr22:50957725 synonymous SNV . 0 22 hm5C_associated_SNPs_119196 0 0 1 0 1 NCAPH2 chr22:50957749 5'GT 50957749 Upstream 25bp
chr17 18918402 18918402 1 + C A rs139157891 18918398 + 18918378 18918418 41 GATCGCAGTGATGCTGGCGGCGCTCATGTCGTCGCTGACCT GATCGCAGTGATGCTGGCGGCGCTAATGTCGTCGCTGACCT < 41bp 0.299356784144301 0.721020501327845 0.1172784 0.19689265 prediction 0.442041002655691 Functional Gain - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18918398 chr17:18918402 synonymous SNV . 0 25 hm5C_associated_SNPs_119200 0 0 0 0 1 SLC5A10 chr17:18918362 3'AG 18918362 Downstream 41bp
chr16 67168085 67168085 1 + T C KIRP 67168083 + 67168063 67168103 41 GTTTGCAGCCCAATTTTGCCCATGGCCTGGCTTCTCTCCAG GTTTGCAGCCCAATTTTGCCCACGGCCTGGCTTCTCTCCAG < 41bp 0.439117710617549 0.721019093900048 0.34815437 0.20536011 prediction 0.442038187800097 Functional Gain - C16orf70 ENSG00000125149 CDS Human protein_coding chr16:67168083 chr16:67168085 synonymous SNV . 0 23 hm5C_associated_SNPs_119201 0 0 1 0 2 C16orf70 chr16:67168071 3'AG 67168071 Downstream 15bp
chr16 67168085 67168085 1 + T C KIRP 67168083 + 67168063 67168103 41 GTTTGCAGCCCAATTTTGCCCATGGCCTGGCTTCTCTCCAG GTTTGCAGCCCAATTTTGCCCACGGCCTGGCTTCTCTCCAG < 41bp 0.439117710617549 0.721019093900048 0.34815437 0.20536011 prediction 0.442038187800097 Functional Gain - C16orf70 ENSG00000125149 CDS Human protein_coding chr16:67168083 chr16:67168085 synonymous SNV . 0 23 hm5C_associated_SNPs_119201 0 0 1 0 2 C16orf70 chr16:67168168 5'GT 67168168 Upstream 84bp
chr17 73819525 73819525 1 + C T rs8078208 73819524 + 73819504 73819544 41 CCAGGCCCTGCCCGCCTTCTCCGACCTGGAGGCGCTCTCAC CCAGGCCCTGCCCGCCTTCTCTGACCTGGAGGCGCTCTCAC < 41bp 0.473499634253718 0.721008486588641 0.45694444 0.14003575 prediction 0.442016973177281 Functional Gain - UNK ENSG00000132478 CDS Human protein_coding chr17:73819524 chr17:73819525 synonymous SNV . 0 22 hm5C_associated_SNPs_119207 0 0 1 0 1 UNK chr17:73819603 5'GT 73819603 Upstream 79bp
chrX 99917202 99917202 1 + C T HNSC 99917201 + 99917181 99917221 41 TGGTGTTATACATTAAATATCCAGGATGGAGAAGCCACATG TGGTGTTATACATTAAATATCTAGGATGGAGAAGCCACATG < 41bp 0.485232762413013 0.721000075011382 0.26647794 0.18400532 prediction 0.442000150022765 Functional Gain - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99917201 chrX:99917202 stopgain 1.000 0 22 hm5C_associated_SNPs_119209 0 0 0 0 1 SRPX2 chrX:99917173 3'AG 99917173 Downstream 30bp
chr11 34979119 34979119 1 + C T rs76486106 34979118 + 34979098 34979138 41 TGTCAAGAAGGAACACATACCCGGGACACTACGGTGAGTAT TGTCAAGAAGGAACACATACCTGGGACACTACGGTGAGTAT < 41bp 0.489610600752778 0.72099860203065 0.8880584 0.66712314 prediction 0.4419972040613 Functional Gain - PDHX ENSG00000110435 CDS Human protein_coding chr11:34979118 chr11:34979119 synonymous SNV . 0 22 hm5C_associated_SNPs_119211 2 0 1 0 1 PDHX chr11:34979130 5'GT 34979130 Upstream 12bp
chr15 76634133 76634133 1 + C T UCEC 76634132 + 76634112 76634152 41 CCTCCCTGTCCTCGCAGCTCCCGGACACCCCCAACAGTATG CCTCCCTGTCCTCGCAGCTCCTGGACACCCCCAACAGTATG < 41bp 0.557061833641218 0.778051490752346 0.2275162 0.06378162 prediction 0.441979314222256 Functional Gain - ISL2 ENSG00000159556 CDS Human protein_coding chr15:76634132 chr15:76634133 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_119217 0 0 1 0 1 ISL2 chr15:76634060 3'AG 76634060 Downstream 74bp
chr7 101944560 101944560 1 + C T LUAD 101944559 + 101944539 101944579 41 CCTGGAGTTCTTCGTGCCGCCCAAAGTGAGTTACCCCATAA CCTGGAGTTCTTCGTGCCGCCTAAAGTGAGTTACCCCATAA < 41bp 0.565967380693638 0.786956884988204 0.032588184 0.04842192 prediction 0.441979008589132 Functional Gain - SH2B2 ENSG00000160999 CDS Human protein_coding chr7:101944559 chr7:101944560 synonymous SNV . 0 22 hm5C_associated_SNPs_119218 0 0 0 0 1 SH2B2 chr7:101944563 5'GT 101944563 Upstream 4bp
chr7 73470610 73470610 1 + C T LAML 73470609 + 73470589 73470629 41 TTCCCTCTGCAGGGGCCAGGCCCGGAGTCGGAGTTGGAGGC TTCCCTCTGCAGGGGCCAGGCTCGGAGTCGGAGTTGGAGGC < 41bp 0.515614348122544 0.736598580935688 0.87530625 0.85121655 prediction 0.441968465626288 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73470609 chr7:73470610 nonsynonymous SNV 0.122 1 22 hm5C_associated_SNPs_119220 0 0 0 0 1 ELN chr7:73470601 3'AG 73470601 Downstream 10bp
chr7 128587411 128587411 1 + C T rs567430670 128587410 + 128587390 128587430 41 GCCGCCCACTCTGCAGCCGCCCGTGGTGCTGGGTCCCCCTG GCCGCCCACTCTGCAGCCGCCTGTGGTGCTGGGTCCCCCTG < 41bp 0.520530379005671 0.741511784863592 0.10003397 0.12776095 prediction 0.441962811715842 Functional Gain - IRF5 ENSG00000128604 CDS Human protein_coding chr7:128587410 chr7:128587411 synonymous SNV . 0 22 hm5C_associated_SNPs_119221 0 0 0 0 1 IRF5 chr7:128587332 3'AG 128587332 Downstream 80bp
chr10 93220277 93220277 1 + C A LUAD 93220276 + 93220256 93220296 41 AAATGAAGGCCCCAGTCCTTCCAGAACCTATTCTTCCTATC AAATGAAGGCCCCAGTCCTTCAAGAACCTATTCTTCCTATC < 41bp 0.583542374286578 0.804519009484953 0.1465919 0.28229645 prediction 0.44195327039675 Functional Gain - HECTD2 ENSG00000165338 CDS Human protein_coding chr10:93220276 chr10:93220277 nonsynonymous SNV 0.913 1 22 hm5C_associated_SNPs_119223 0 0 0 1 2 HECTD2 chr10:93220184 3'AG 93220184 Downstream 94bp
chr10 93220277 93220277 1 + C A LUAD 93220276 + 93220256 93220296 41 AAATGAAGGCCCCAGTCCTTCCAGAACCTATTCTTCCTATC AAATGAAGGCCCCAGTCCTTCAAGAACCTATTCTTCCTATC < 41bp 0.583542374286578 0.804519009484953 0.1465919 0.28229645 prediction 0.44195327039675 Functional Gain - HECTD2 ENSG00000165338 CDS Human protein_coding chr10:93220276 chr10:93220277 nonsynonymous SNV 0.913 1 22 hm5C_associated_SNPs_119223 0 0 0 1 2 HECTD2 chr10:93220322 5'GT 93220322 Upstream 46bp
chr16 10575768 10575768 1 + C T UCEC 10575767 + 10575747 10575787 41 CCTGAATTAGTAGACAAAACCCGAGACACACTTCCTCCCCA CCTGAATTAGTAGACAAAACCTGAGACACACTTCCTCCCCA < 41bp 0.540293245005551 0.761267024091626 0.40338415 0.2675904 prediction 0.44194755817215 Functional Gain - ATF7IP2 ENSG00000166669 CDS Human protein_coding chr16:10575767 chr16:10575768 stopgain 0.959 0 22 hm5C_associated_SNPs_119226 0 0 1 0 1 ATF7IP2 chr16:10575693 3'AG 10575693 Downstream 76bp
chr15 39880779 39880779 1 + T C LIHC 39880776 + 39880756 39880796 41 TGGGACATCTGTTCTGTCACCTGTGGAGGAGGGGTACAGAA TGGGACATCTGTTCTGTCACCTGCGGAGGAGGGGTACAGAA < 41bp 0.489740720790313 0.720967646480359 0.34980643 0.83359516 prediction 0.441935292960719 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39880776 chr15:39880779 synonymous SNV . 0 24 hm5C_associated_SNPs_119229 0 0 1 0 1 THBS1 chr15:39880727 3'AG 39880727 Downstream 53bp
chrX 65412091 65412091 1 + C T SKCM 65412090 + 65412070 65412110 41 GAGATTCAATGGGACTATGGCCCGATGGGGCATGATGGGAG GAGATTCAATGGGACTATGGCTCGATGGGGCATGATGGGAG < 41bp 0.610633192865593 0.831594825903143 0.15212524 0.17147201 prediction 0.441923266075101 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65412090 chrX:65412091 nonsynonymous SNV 0.877 5 22 hm5C_associated_SNPs_119231 0 0 1 0 1 HEPH chrX:65412140 5'GT 65412140 Upstream 50bp
chr5 137681256 137681256 1 + C T SKCM 137681255 + 137681235 137681275 41 GCGGCGCCACGAGGAAGACCCCCGGCGTCTGCGGCCTTCGT GCGGCGCCACGAGGAAGACCCTCGGCGTCTGCGGCCTTCGT < 41bp 0.466006109002759 0.720961366092513 0.8638427 0.5108645 prediction 0.441922732185026 Functional Gain - FAM53C ENSG00000120709 CDS Human protein_coding chr5:137681255 chr5:137681256 nonsynonymous SNV 0.961 1 22 hm5C_associated_SNPs_119232 0 0 1 0 1 FAM53C chr5:137681298 5'GT 137681298 Upstream 43bp
chr19 46185005 46185005 1 + C G HNSC 46185001 + 46184981 46185021 41 TCACAGGTGCAGTCGGAGATCCGCCGTGGCTGGCACCACTG TCACAGGTGCAGTCGGAGATCCGCGGTGGCTGGCACCACTG < 41bp 0.641182046869553 0.86214318013394 0.5028521 0.90195084 prediction 0.441922266528774 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46185001 chr19:46185005 nonsynonymous SNV 0.929 1 25 hm5C_associated_SNPs_119233 0 0 1 0 1 GIPR chr19:46184987 3'AG 46184987 Downstream 19bp
chr9 132484532 132484532 1 + C T SKCM 132484531 + 132484511 132484551 41 CAGCCCTGGGAGCTCAGGCCCCGCAACCCCAGGGGTCAACA CAGCCCTGGGAGCTCAGGCCCTGCAACCCCAGGGGTCAACA < 41bp 0.47299601545777 0.720957039080283 0.15046924 0.19276592 prediction 0.441914078160566 Functional Gain - PRRX2 ENSG00000167157 CDS Human protein_coding chr9:132484531 chr9:132484532 synonymous SNV . 0 22 hm5C_associated_SNPs_119234 0 0 0 0 1 PRRX2 chr9:132484496 3'AG 132484496 Downstream 37bp
chr11 82639926 82639926 1 + T C UCEC 82639923 + 82639903 82639943 41 AAACAAATTGTTTGTTATTACTGTATTTGGAAGTTGCTTAG AAACAAATTGTTTGTTATTACTGCATTTGGAAGTTGCTTAG < 41bp 0.499107616334928 0.720955897693182 0.19999763 0.21651769 prediction 0.441911795386364 Functional Gain - DDIAS ENSG00000165490 CDS Human protein_coding chr11:82639923 chr11:82639926 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_119235 0 0 1 0 1 DDIAS chr11:82639980 5'GT 82639980 Upstream 55bp
chr4 39471710 39471710 1 + C A UCEC 39471706 + 39471686 39471726 41 TGAAACATGCCAAGAAGGTTCAGCCTGATGTTATTTCTAAA TGAAACATGCCAAGAAGGTTCAGCATGATGTTATTTCTAAA < 41bp 0.300574575393016 0.720954040155634 0.047705323 0.07677448 prediction 0.441908080311268 Functional Gain - LIAS ENSG00000121897 CDS Human protein_coding chr4:39471706 chr4:39471710 nonsynonymous SNV 0.991 4 25 hm5C_associated_SNPs_119238 0 0 0 0 2 LIAS chr4:39471639 3'AG 39471639 Downstream 72bp
chr4 39471710 39471710 1 + C A UCEC 39471706 + 39471686 39471726 41 TGAAACATGCCAAGAAGGTTCAGCCTGATGTTATTTCTAAA TGAAACATGCCAAGAAGGTTCAGCATGATGTTATTTCTAAA < 41bp 0.300574575393016 0.720954040155634 0.047705323 0.07677448 prediction 0.441908080311268 Functional Gain - LIAS ENSG00000121897 CDS Human protein_coding chr4:39471706 chr4:39471710 nonsynonymous SNV 0.991 4 25 hm5C_associated_SNPs_119238 0 0 0 0 2 LIAS chr4:39471784 5'GT 39471784 Upstream 75bp
chr11 126146105 126146105 1 + C T COAD 126146104 + 126146084 126146124 41 GCACCAAGCTACCTGTGGAGCCGAGGAAAAGGTAACTGCCC GCACCAAGCTACCTGTGGAGCTGAGGAAAAGGTAACTGCCC < 41bp 0.54981553867863 0.770766485311851 0.48028058 0.22982788 prediction 0.441901893266442 Functional Gain - FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126146104 chr11:126146105 nonsynonymous SNV 0.954 2 22 hm5C_associated_SNPs_119240 0 0 1 0 1 FOXRED1 chr11:126146114 5'GT 126146114 Upstream 10bp
chr2 220366257 220366257 1 + C T SKCM 220366256 + 220366236 220366276 41 CCAACCTGATGAGCCCCTCACCCAGTTCCTAGAAGCCGCCC CCAACCTGATGAGCCCCTCACTCAGTTCCTAGAAGCCGCCC < 41bp 0.459379436639374 0.720946854135772 0.05757928 0.03144011 prediction 0.441893708271544 Functional Gain - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220366256 chr2:220366257 synonymous SNV . 0 22 hm5C_associated_SNPs_119241 0 0 0 0 2 GMPPA chr2:220366198 3'AG 220366198 Downstream 60bp
chr2 220366257 220366257 1 + C T SKCM 220366256 + 220366236 220366276 41 CCAACCTGATGAGCCCCTCACCCAGTTCCTAGAAGCCGCCC CCAACCTGATGAGCCCCTCACTCAGTTCCTAGAAGCCGCCC < 41bp 0.459379436639374 0.720946854135772 0.05757928 0.03144011 prediction 0.441893708271544 Functional Gain - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220366256 chr2:220366257 synonymous SNV . 0 22 hm5C_associated_SNPs_119241 0 0 0 0 2 GMPPA chr2:220366301 5'GT 220366301 Upstream 45bp
chr1 159783292 159783292 1 + C T SKCM 159783291 + 159783271 159783311 41 TCTCCTAGGGCCCCTTCCATCCCAGATACCACCCACAGCTC TCTCCTAGGGCCCCTTCCATCTCAGATACCACCCACAGCTC < 41bp 0.583248385418724 0.804193576809402 0.4258286 0.17428955 prediction 0.441890382781356 Functional Gain - FCRL6 ENSG00000181036 CDS Human protein_coding chr1:159783291 chr1:159783292 synonymous SNV . 0 22 hm5C_associated_SNPs_119242 0 0 0 0 2 FCRL6 chr1:159783279 3'AG 159783279 Downstream 14bp
chr1 159783292 159783292 1 + C T SKCM 159783291 + 159783271 159783311 41 TCTCCTAGGGCCCCTTCCATCCCAGATACCACCCACAGCTC TCTCCTAGGGCCCCTTCCATCTCAGATACCACCCACAGCTC < 41bp 0.583248385418724 0.804193576809402 0.4258286 0.17428955 prediction 0.441890382781356 Functional Gain - FCRL6 ENSG00000181036 CDS Human protein_coding chr1:159783291 chr1:159783292 synonymous SNV . 0 22 hm5C_associated_SNPs_119242 0 0 0 0 2 FCRL6 chr1:159783344 5'GT 159783344 Upstream 53bp
chr7 100320301 100320301 1 + C G rs140683829 100320300 + 100320280 100320320 41 CCTGTAGGTCGGGCAGCAGGCCGTAGAAGTCTGGCAGGGCC CCTGTAGGTCGGGCAGCAGGCGGTAGAAGTCTGGCAGGGCC < 41bp 0.670170512323247 0.891113114241187 0.33988988 0.7773622 prediction 0.44188520383588 Functional Gain - EPO ENSG00000130427 CDS Human protein_coding chr7:100320300 chr7:100320301 synonymous SNV . 0 22 hm5C_associated_SNPs_119243 0 0 1 0 1 EPO chr7:100320287 3'AG 100320287 Downstream 15bp
chr1 7887260 7887260 1 + C G KICH 7887256 + 7887236 7887276 41 GAAGAAGCTGCCGGAGCCGCCAGACAGCAGCAGCTCGAACA GAAGAAGCTGCCGGAGCCGCCAGAGAGCAGCAGCTCGAACA < 41bp 0.414935790524998 0.720941371225963 0.8939037 0.90046006 prediction 0.441882742451927 Functional Gain - PER3 ENSG00000049246 CDS Human protein_coding chr1:7887256 chr1:7887260 nonsynonymous SNV 0.017 0 25 hm5C_associated_SNPs_119245 0 0 0 0 1 PER3 chr1:7887178 3'AG 7887178 Downstream 83bp
chr8 144463885 144463885 1 + C T COAD 144463884 + 144463864 144463904 41 CGTCATTCCAGGGAGCCAGGCCGCGGTAAGGGCCCCGCCGG CGTCATTCCAGGGAGCCAGGCTGCGGTAAGGGCCCCGCCGG < 41bp 0.552061698895472 0.772999715457371 0.84564686 0.56503993 prediction 0.441876033123798 Functional Gain - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144463884 chr8:144463885 synonymous SNV . 0 22 hm5C_associated_SNPs_119249 0 0 1 0 1 RHPN1 chr8:144463888 5'GT 144463888 Upstream 4bp
chr1 53678987 53678987 1 + A G UCEC 53678984 + 53678964 53679004 41 TCTGCGGCATCTGGCAGCAGCCAAAGGGATCATCTTGCCTG TCTGCGGCATCTGGCAGCAGCCAGAGGGATCATCTTGCCTG < 41bp 0.559111322549016 0.780041205974684 0.419464 0.80719125 prediction 0.441859766851337 Functional Gain - CPT2 ENSG00000157184 CDS Human protein_coding chr1:53678984 chr1:53678987 nonsynonymous SNV 0.026 1 24 hm5C_associated_SNPs_119251 0 0 1 0 1 CPT2 chr1:53678936 3'AG 53678936 Downstream 52bp
chr2 79253243 79253243 1 + C T LUSC 79253242 + 79253222 79253262 41 GCTGCCTCCCATGGCCCTGCCCAGTGTGTCCTGGATGCTGC GCTGCCTCCCATGGCCCTGCCTAGTGTGTCCTGGATGCTGC < 41bp 0.552297846610278 0.77322707702812 0.08201796 0.12560576 prediction 0.441858460835684 Functional Gain - REG3G ENSG00000143954 CDS Human protein_coding chr2:79253242 chr2:79253243 synonymous SNV . 0 22 hm5C_associated_SNPs_119252 0 0 0 0 2 REG3G chr2:79253209 3'AG 79253209 Downstream 35bp
chr2 79253243 79253243 1 + C T LUSC 79253242 + 79253222 79253262 41 GCTGCCTCCCATGGCCCTGCCCAGTGTGTCCTGGATGCTGC GCTGCCTCCCATGGCCCTGCCTAGTGTGTCCTGGATGCTGC < 41bp 0.552297846610278 0.77322707702812 0.08201796 0.12560576 prediction 0.441858460835684 Functional Gain - REG3G ENSG00000143954 CDS Human protein_coding chr2:79253242 chr2:79253243 synonymous SNV . 0 22 hm5C_associated_SNPs_119252 0 0 0 0 2 REG3G chr2:79253295 5'GT 79253295 Upstream 53bp
chr11 120097534 120097534 1 + C T COAD 120097533 + 120097513 120097553 41 TCCCACACACAGAAAAATCCCCGGGCAGTGCGGCAGGCGGA TCCCACACACAGAAAAATCCCTGGGCAGTGCGGCAGGCGGA < 41bp 0.547766940261275 0.768695648477486 0.37953603 0.29610312 prediction 0.441857416432422 Functional Gain - OAF ENSG00000184232 CDS Human protein_coding chr11:120097533 chr11:120097534 nonsynonymous SNV 0.442 4 22 hm5C_associated_SNPs_119253 0 0 1 0 1 OAF chr11:120097525 3'AG 120097525 Downstream 10bp
chr9 101606450 101606450 1 + C A ACC 101606449 + 101606429 101606469 41 GAAAACCAGATTGTGGGACACCAGGTCATTCTGTACCTCTG GAAAACCAGATTGTGGGACACAAGGTCATTCTGTACCTCTG < 41bp 0.462744476684426 0.720919001524521 0.7872708 0.7628038 prediction 0.441838003049041 Functional Gain - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101606449 chr9:101606450 nonsynonymous SNV 0.863 1 22 hm5C_associated_SNPs_119255 0 0 1 0 2 GALNT12 chr9:101606378 3'AG 101606378 Downstream 73bp
chr9 101606450 101606450 1 + C A ACC 101606449 + 101606429 101606469 41 GAAAACCAGATTGTGGGACACCAGGTCATTCTGTACCTCTG GAAAACCAGATTGTGGGACACAAGGTCATTCTGTACCTCTG < 41bp 0.462744476684426 0.720919001524521 0.7872708 0.7628038 prediction 0.441838003049041 Functional Gain - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101606449 chr9:101606450 nonsynonymous SNV 0.863 1 22 hm5C_associated_SNPs_119255 0 0 1 0 2 GALNT12 chr9:101606491 5'GT 101606491 Upstream 42bp
chr10 73082758 73082758 1 + C T SKCM 73082757 + 73082737 73082777 41 GAGTACTGGATGTTCAAACTCCGCAACTCCTCCAGCCCAGC GAGTACTGGATGTTCAAACTCTGCAACTCCTCCAGCCCAGC < 41bp 0.60456214056746 0.825480811014461 0.10158378 0.12840295 prediction 0.441837340894001 Functional Gain - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73082757 chr10:73082758 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_119256 0 0 1 0 1 SLC29A3 chr10:73082811 5'GT 73082811 Upstream 54bp
chr15 45951302 45951302 1 + C A SARC 45951301 + 45951281 45951321 41 GGCGGAATCACCATGGCTGCCCGCATGAAGAGGAAAGTGGG GGCGGAATCACCATGGCTGCCAGCATGAAGAGGAAAGTGGG < 41bp 0.604766292037042 0.825684502122769 0.24813586 0.36199147 prediction 0.441836420171454 Functional Gain - SQOR ENSG00000137767;ENSG00000260170 CDS Human other chr15:45951301 chr15:45951302 nonsynonymous SNV 0.736 1 22 hm5C_associated_SNPs_119257 0 0 0 0 1 SQOR chr15:45951355 5'GT 45951355 Upstream 54bp
chr5 76349900 76349900 1 + T C rs6865460 76349897 + 76349877 76349917 41 GGCAGTGATACCTGTGATGGCTGTGAACCAGGGCAGGTTAG GGCAGTGATACCTGTGATGGCTGCGAACCAGGGCAGGTTAG < 41bp 0.511914913267905 0.732830979055549 0.13220638 0.16832626 prediction 0.441832131575288 Functional Gain - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76349897 chr5:76349900 synonymous SNV . 0 24 hm5C_associated_SNPs_119262 0 0 1 0 1 AGGF1 chr5:76349955 5'GT 76349955 Upstream 56bp
chr8 133931748 133931748 1 + T A rs853304 133931744 + 133931724 133931764 41 TGTGGGCAGAACGACCATTTCTGCTGGAGCTTTCAGCCAGA TGTGGGCAGAACGACCATTTCTGCAGGAGCTTTCAGCCAGA < 41bp 0.392003538814041 0.720906964543308 0.17107224 0.2999469 prediction 0.441813929086616 Functional Gain - TG ENSG00000042832 CDS Human protein_coding chr8:133931744 chr8:133931748 synonymous SNV . 0 25 hm5C_associated_SNPs_119267 0 0 0 0 1 TG chr8:133931770 5'GT 133931770 Upstream 23bp
chr14 24529209 24529209 1 + C G rs61564890 24529208 + 24529188 24529228 41 GCTGCGCTTCATGTCCTTCCCCGTGAGCGACATCTCCCAAG GCTGCGCTTCATGTCCTTCCCGGTGAGCGACATCTCCCAAG < 41bp 0.401071964529984 0.720904654229757 0.20798486 0.38654345 prediction 0.441809308459513 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24529208 chr14:24529209 synonymous SNV . 0 22 hm5C_associated_SNPs_119269 0 0 0 0 2 CARMIL3 chr14:24529179 3'AG 24529179 Downstream 31bp
chr14 24529209 24529209 1 + C G rs61564890 24529208 + 24529188 24529228 41 GCTGCGCTTCATGTCCTTCCCCGTGAGCGACATCTCCCAAG GCTGCGCTTCATGTCCTTCCCGGTGAGCGACATCTCCCAAG < 41bp 0.401071964529984 0.720904654229757 0.20798486 0.38654345 prediction 0.441809308459513 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24529208 chr14:24529209 synonymous SNV . 0 22 hm5C_associated_SNPs_119269 0 0 0 0 2 CARMIL3 chr14:24529272 5'GT 24529272 Upstream 64bp
chrX 38271170 38271170 1 + C A LUAD 38271169 + 38271149 38271189 41 TACACTGCTTGCCCAGAAAGCCAGAAGAAGTGGATGATGAA TACACTGCTTGCCCAGAAAGCAAGAAGAAGTGGATGATGAA < 41bp 0.464115387399811 0.720900742582723 0.60731965 0.88616085 prediction 0.441801485165447 Functional Gain - OTC ENSG00000036473 CDS Human protein_coding chrX:38271169 chrX:38271170 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_119270 0 0 0 0 2 OTC chrX:38271115 3'AG 38271115 Downstream 56bp
chrX 38271170 38271170 1 + C A LUAD 38271169 + 38271149 38271189 41 TACACTGCTTGCCCAGAAAGCCAGAAGAAGTGGATGATGAA TACACTGCTTGCCCAGAAAGCAAGAAGAAGTGGATGATGAA < 41bp 0.464115387399811 0.720900742582723 0.60731965 0.88616085 prediction 0.441801485165447 Functional Gain - OTC ENSG00000036473 CDS Human protein_coding chrX:38271169 chrX:38271170 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_119270 0 0 0 0 2 OTC chrX:38271252 5'GT 38271252 Upstream 83bp
chr7 128588699 128588699 1 + C T LUSC 128588698 + 128588678 128588718 41 TCTTGGTCAGCTGATAGTATCCGGCTACAGATCTCAAACCC TCTTGGTCAGCTGATAGTATCTGGCTACAGATCTCAAACCC < 41bp 0.52559167707601 0.746490872747199 0.38388473 0.11154887 prediction 0.441798391342378 Functional Gain - IRF5 ENSG00000128604 CDS Human protein_coding chr7:128588698 chr7:128588699 nonsynonymous SNV 0.986 4 22 hm5C_associated_SNPs_119271 0 0 1 0 1 IRF5 chr7:128588627 3'AG 128588627 Downstream 73bp
chr12 9085945 9085945 1 + C T COAD 9085944 + 9085924 9085964 41 ATATGCAGTCTGTGCACTTGCCGGTGAGTGATGTCTGATGG ATATGCAGTCTGTGCACTTGCTGGTGAGTGATGTCTGATGG < 41bp 0.478240783989248 0.720898904912842 0.46499372 0.26852745 prediction 0.441797809825685 Functional Gain - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9085944 chr12:9085945 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_119273 0 0 1 0 2 PHC1 chr12:9085851 3'AG 9085851 Downstream 95bp
chr12 9085945 9085945 1 + C T COAD 9085944 + 9085924 9085964 41 ATATGCAGTCTGTGCACTTGCCGGTGAGTGATGTCTGATGG ATATGCAGTCTGTGCACTTGCTGGTGAGTGATGTCTGATGG < 41bp 0.478240783989248 0.720898904912842 0.46499372 0.26852745 prediction 0.441797809825685 Functional Gain - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9085944 chr12:9085945 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_119273 0 0 1 0 2 PHC1 chr12:9085946 5'GT 9085946 Upstream 2bp
chr17 59479268 59479268 1 + C T HNSC 59479267 + 59479247 59479287 41 ATGGCTAAGCCTGTGGCCTTCCACAAGCTGAAGCTGACCAA ATGGCTAAGCCTGTGGCCTTCTACAAGCTGAAGCTGACCAA < 41bp 0.444787382441015 0.720896856804248 0.24383771 0.71439385 prediction 0.441793713608495 Functional Gain - TBX2 ENSG00000121068 CDS Human protein_coding chr17:59479267 chr17:59479268 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_119275 0 0 0 0 1 TBX2 chr17:59479312 5'GT 59479312 Upstream 45bp
chr12 52448188 52448188 1 + C G rs1882118 52448187 + 52448167 52448207 41 GACCACCTGGCAAGCGACCCCCTGACCCCTGAGTTCATCAA GACCACCTGGCAAGCGACCCCGTGACCCCTGAGTTCATCAA < 41bp 0.402306267090936 0.720895715698664 0.03329581 0.11853796 prediction 0.441791431397328 Functional Gain - NR4A1 ENSG00000123358 CDS Human protein_coding chr12:52448187 chr12:52448188 nonsynonymous SNV 0.864 2 22 hm5C_associated_SNPs_119276 0 0 0 0 1 NR4A1 chr12:52448111 3'AG 52448111 Downstream 78bp
chr16 23701255 23701255 1 + A G rs56298795 23701252 + 23701232 23701272 41 GACGAGAAGCGGGACTTCCGCACATACCGCCTGAGTCTCCT GACGAGAAGCGGGACTTCCGCACGTACCGCCTGAGTCTCCT < 41bp 0.544997688018199 0.76588358761206 0.017489702 0.07104948 prediction 0.441771799187722 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23701252 chr16:23701255 synonymous SNV . 0 24 hm5C_associated_SNPs_119280 0 0 1 0 1 PLK1 chr16:23701181 3'AG 23701181 Downstream 75bp
chr7 99997443 99997443 1 + C T rs140582389 99997442 + 99997422 99997462 41 CTATGCTTCCCTTGCCCTCTCCAGCTCCACCTCACCCAGAG CTATGCTTCCCTTGCCCTCTCTAGCTCCACCTCACCCAGAG < 41bp 0.480100781395617 0.720872888093462 0.038081706 0.0400742 prediction 0.441745776186924 Functional Gain - PILRA ENSG00000085514 CDS Human protein_coding chr7:99997442 chr7:99997443 synonymous SNV . 0 22 hm5C_associated_SNPs_119286 0 0 0 1 1 PILRA chr7:99997408 3'AG 99997408 Downstream 36bp
chr12 34175635 34175635 1 + C T UCEC 34175634 + 34175614 34175654 41 TCAGCCGGGCGTTGCGAGAGCCCTACATGGACGAGATCTTC TCAGCCGGGCGTTGCGAGAGCTCTACATGGACGAGATCTTC < 41bp 0.488501381052769 0.720852302144755 0.8135116 0.8361069 prediction 0.441704604289511 Functional Gain - ALG10 ENSG00000139133 CDS Human protein_coding chr12:34175634 chr12:34175635 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_119292 0 0 0 0 1 ALG10 chr12:34175705 5'GT 34175705 Upstream 71bp
chr9 36118962 36118962 1 + C T SKCM 36118961 + 36118941 36118981 41 GATGCAAACCCATCATCCCACCGGGTAGGCTGGCAGTATCG GATGCAAACCCATCATCCCACTGGGTAGGCTGGCAGTATCG < 41bp 0.552259234507683 0.773111238643834 0.869779 0.7919359 prediction 0.441704008272301 Functional Gain - RECK ENSG00000122707 CDS Human protein_coding chr9:36118961 chr9:36118962 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_119293 0 0 0 0 1 RECK chr9:36118964 5'GT 36118964 Upstream 3bp
chr3 183354014 183354014 1 + C G rs116340275 183354013 + 183353993 183354033 41 CTGCTTTTTATTTCAGGAAGCCCGGGGGAGTGCGACCGCCT CTGCTTTTTATTTCAGGAAGCGCGGGGGAGTGCGACCGCCT < 41bp 0.439234179636714 0.720836299169425 0.9094336 0.90969384 prediction 0.441672598338851 Functional Gain - KLHL24 ENSG00000114796 UTR5 Human protein_coding chr3:183354013 chr3:183354014 . . 0 22 hm5C_associated_SNPs_119295 0 0 1 0 2 KLHL24 chr3:183354009 3'AG 183354009 Downstream 6bp
chr3 183354014 183354014 1 + C G rs116340275 183354013 + 183353993 183354033 41 CTGCTTTTTATTTCAGGAAGCCCGGGGGAGTGCGACCGCCT CTGCTTTTTATTTCAGGAAGCGCGGGGGAGTGCGACCGCCT < 41bp 0.439234179636714 0.720836299169425 0.9094336 0.90969384 prediction 0.441672598338851 Functional Gain - KLHL24 ENSG00000114796 UTR5 Human protein_coding chr3:183354013 chr3:183354014 . . 0 22 hm5C_associated_SNPs_119295 0 0 1 0 2 KLHL24 chr3:183354099 5'GT 183354099 Upstream 86bp
chr1 43804244 43804244 1 + C T LUAD 43804243 + 43804223 43804263 41 CGTGCTTGCCCCCTGAGTTCCCAGAGCATGCCCCACTTTGG CGTGCTTGCCCCCTGAGTTCCTAGAGCATGCCCCACTTTGG < 41bp 0.572736168235387 0.79356614653186 0.6685557 0.17905146 prediction 0.441659956592946 Functional Gain - MPL ENSG00000117400 CDS Human protein_coding chr1:43804243 chr1:43804244 stopgain 0.915 1 22 hm5C_associated_SNPs_119296 0 0 0 0 1 MPL chr1:43804213 3'AG 43804213 Downstream 32bp
chr7 140402692 140402692 1 + C T SKCM 140402691 + 140402671 140402711 41 GTGGTGGTGTGCACATTGAGCCCCGGTATAGACAGTTCCCC GTGGTGGTGTGCACATTGAGCTCCGGTATAGACAGTTCCCC < 41bp 0.572726131912261 0.79355499906481 0.05371824 0.08269337 prediction 0.441657734305098 Functional Gain - NDUFB2 ENSG00000090266 CDS Human protein_coding chr7:140402691 chr7:140402692 nonsynonymous SNV 0.984 3 22 hm5C_associated_SNPs_119297 0 0 1 0 1 NDUFB2 chr7:140402666 3'AG 140402666 Downstream 27bp
chr15 28900469 28900469 1 + C T UCEC 28900468 + 28900448 28900488 41 CCTTCCGTCATGGGACAAGACCGAAAGGGCGAGGGACATGA CCTTCCGTCATGGGACAAGACTGAAAGGGCGAGGGACATGA < 41bp 0.562474503929561 0.78330026057132 0.057982773 0.09900749 prediction 0.441651513283518 Functional Gain - HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28900468 chr15:28900469 . . 0 22 hm5C_associated_SNPs_119298 0 0 1 0 1 HERC2P9 chr15:28900566 5'GT 28900566 Upstream 98bp
chr6 43488150 43488150 1 + T C COAD 43488147 + 43488127 43488167 41 AAGAAATTGACCTGCTCATGCACTGTGTCAAGGGCATTGGT AAGAAATTGACCTGCTCATGCACCGTGTCAAGGGCATTGGT < 41bp 0.497255631362788 0.720825484562227 0.0647935 0.05387506 prediction 0.441650969124455 Functional Gain - POLR1C ENSG00000171453 CDS Human protein_coding chr6:43488147 chr6:43488150 nonsynonymous SNV 0.992 3 24 hm5C_associated_SNPs_119299 0 0 1 0 1 POLR1C chr6:43488165 5'GT 43488165 Upstream 16bp
chr7 154863297 154863297 1 + C T ACC 154863296 + 154863276 154863316 41 ATCTACAAGGCTGCCAAGTTCCGCGTGGGCTCCAGGAAGAC ATCTACAAGGCTGCCAAGTTCTGCGTGGGCTCCAGGAAGAC < 41bp 0.570082144371314 0.790906469478215 0.2789303 0.2691276 prediction 0.441648650213802 Functional Gain - HTR5A ENSG00000157219 CDS Human protein_coding chr7:154863296 chr7:154863297 nonsynonymous SNV 0.948 4 22 hm5C_associated_SNPs_119300 0 0 0 0 1 HTR5A chr7:154863350 5'GT 154863350 Upstream 54bp
chr6 3083474 3083474 1 + C A BLCA 3083473 + 3083453 3083493 41 GAATGACGTCAACGCAAAGCCCACAGAGAAGTCGGATGTGT GAATGACGTCAACGCAAAGCCAACAGAGAAGTCGGATGTGT < 41bp 0.582610546892254 0.803434626658982 0.02708736 0.0728786 prediction 0.441648159533458 Functional Gain - RIPK1 ENSG00000137275 CDS Human protein_coding chr6:3083473 chr6:3083474 synonymous SNV . 0 22 hm5C_associated_SNPs_119301 0 0 0 0 1 RIPK1 chr6:3083547 5'GT 3083547 Upstream 74bp
chrX 48123281 48123281 1 + C A LUSC 48123280 + 48123260 48123300 41 GAGTGTCAGAAGCATCTGGCCCACAAAACGATGGGAAACAA GAGTGTCAGAAGCATCTGGCCAACAAAACGATGGGAAACAA < 41bp 0.461382159152213 0.72081685764323 0.15362707 0.39146057 prediction 0.44163371528646 Functional Gain - SSX1 ENSG00000126752 CDS Human protein_coding chrX:48123280 chrX:48123281 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_119303 0 0 1 0 2 SSX1 chrX:48123217 3'AG 48123217 Downstream 65bp
chrX 48123281 48123281 1 + C A LUSC 48123280 + 48123260 48123300 41 GAGTGTCAGAAGCATCTGGCCCACAAAACGATGGGAAACAA GAGTGTCAGAAGCATCTGGCCAACAAAACGATGGGAAACAA < 41bp 0.461382159152213 0.72081685764323 0.15362707 0.39146057 prediction 0.44163371528646 Functional Gain - SSX1 ENSG00000126752 CDS Human protein_coding chrX:48123280 chrX:48123281 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_119303 0 0 1 0 2 SSX1 chrX:48123352 5'GT 48123352 Upstream 72bp
chr22 42052982 42052982 1 + C T SKCM 42052981 + 42052961 42053001 41 CTGAAAAAATCATGGCAACTCCAGAGCAGGTGGGCAAGATG CTGAAAAAATCATGGCAACTCTAGAGCAGGTGGGCAAGATG < 41bp 0.601295467019753 0.822112250026944 0.754799 0.41816217 prediction 0.441633566014382 Functional Gain - XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42052981 chr22:42052982 nonsynonymous SNV 0.275 0 22 hm5C_associated_SNPs_119304 0 0 1 0 2 XRCC6 chr22:42052907 3'AG 42052907 Downstream 76bp
chr22 42052982 42052982 1 + C T SKCM 42052981 + 42052961 42053001 41 CTGAAAAAATCATGGCAACTCCAGAGCAGGTGGGCAAGATG CTGAAAAAATCATGGCAACTCTAGAGCAGGTGGGCAAGATG < 41bp 0.601295467019753 0.822112250026944 0.754799 0.41816217 prediction 0.441633566014382 Functional Gain - XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42052981 chr22:42052982 nonsynonymous SNV 0.275 0 22 hm5C_associated_SNPs_119304 0 0 1 0 2 XRCC6 chr22:42053036 5'GT 42053036 Upstream 55bp
chr7 100320703 100320703 1 + C T SKCM 100320702 + 100320682 100320722 41 CGAGTCTACTCCAATTTCCTCCGGGGAAAGCTGAAGCTGTA CGAGTCTACTCCAATTTCCTCTGGGGAAAGCTGAAGCTGTA < 41bp 0.538256243520152 0.759065630981813 0.88398886 0.784477 prediction 0.441618774923322 Functional Gain - EPO ENSG00000130427 CDS Human protein_coding chr7:100320702 chr7:100320703 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_119307 0 0 0 0 1 EPO chr7:100320604 3'AG 100320604 Downstream 100bp
chr2 189849577 189849577 1 + A G DLBC 189849574 + 189849554 189849594 41 TGCCAAATATGTGTCTGTGACTCAGGATCCGTTCTCTGCGA TGCCAAATATGTGTCTGTGACTCGGGATCCGTTCTCTGCGA < 41bp 0.48296890866729 0.720795641502741 0.16987175 0.25591218 prediction 0.441591283005482 Functional Gain - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189849574 chr2:189849577 synonymous SNV . 0 24 hm5C_associated_SNPs_119311 0 0 0 0 1 COL3A1 chr2:189849486 3'AG 189849486 Downstream 92bp
chr7 76112453 76112453 1 + C T GBM 76112452 + 76112432 76112472 41 GCCCCCAGGATCCTCCACCTCCGGTGCAGTCAGGTATCGTG GCCCCCAGGATCCTCCACCTCTGGTGCAGTCAGGTATCGTG < 41bp 0.548046277299906 0.768839334047739 0.118860126 0.15403482 prediction 0.441586113495665 Functional Gain - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76112452 chr7:76112453 synonymous SNV . 0 22 hm5C_associated_SNPs_119313 0 0 0 0 1 DTX2 chr7:76112464 5'GT 76112464 Upstream 12bp
chr1 46976865 46976865 1 + C A rs115343921 46976864 + 46976844 46976884 41 CAGCCGGACCGTGAGGAGGACCCCAGGGCAGGGGCTGAGGA CAGCCGGACCGTGAGGAGGACACCAGGGCAGGGGCTGAGGA < 41bp 0.601123649369289 0.821916101113748 0.5741534 0.8450303 prediction 0.441584903488918 Functional Gain - DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46976864 chr1:46976865 nonsynonymous SNV 0.427 1 22 hm5C_associated_SNPs_119314 0 0 0 0 1 DMBX1 chr1:46976955 5'GT 46976955 Upstream 91bp
chr9 133957463 133957463 1 + A G UCEC 133957460 + 133957440 133957480 41 CTCCAGCTGCACCAGGAGGCCAGAGCCGCCCTGACCCAGGC CTCCAGCTGCACCAGGAGGCCAGGGCCGCCCTGACCCAGGC < 41bp 0.476358701962163 0.72079113218227 0.62851894 0.8859172 prediction 0.441582264364539 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133957460 chr9:133957463 synonymous SNV . 0 24 hm5C_associated_SNPs_119315 0 0 0 0 2 LAMC3 chr9:133957446 3'AG 133957446 Downstream 18bp
chr9 133957463 133957463 1 + A G UCEC 133957460 + 133957440 133957480 41 CTCCAGCTGCACCAGGAGGCCAGAGCCGCCCTGACCCAGGC CTCCAGCTGCACCAGGAGGCCAGGGCCGCCCTGACCCAGGC < 41bp 0.476358701962163 0.72079113218227 0.62851894 0.8859172 prediction 0.441582264364539 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133957460 chr9:133957463 synonymous SNV . 0 24 hm5C_associated_SNPs_119315 0 0 0 0 2 LAMC3 chr9:133957548 5'GT 133957548 Upstream 86bp
chr2 101587509 101587509 1 + C T UCEC 101587508 + 101587488 101587528 41 GGCTCTGGAAGACCCGCCATCCGAGGCCCTCCACTCCTCAG GGCTCTGGAAGACCCGCCATCTGAGGCCCTCCACTCCTCAG < 41bp 0.558074453362482 0.77886017529725 0.91627437 0.24553141 prediction 0.441571443869537 Functional Gain - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101587508 chr2:101587509 synonymous SNV . 0 22 hm5C_associated_SNPs_119319 0 0 1 0 2 NPAS2 chr2:101587452 3'AG 101587452 Downstream 58bp
chr2 101587509 101587509 1 + C T UCEC 101587508 + 101587488 101587528 41 GGCTCTGGAAGACCCGCCATCCGAGGCCCTCCACTCCTCAG GGCTCTGGAAGACCCGCCATCTGAGGCCCTCCACTCCTCAG < 41bp 0.558074453362482 0.77886017529725 0.91627437 0.24553141 prediction 0.441571443869537 Functional Gain - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101587508 chr2:101587509 synonymous SNV . 0 22 hm5C_associated_SNPs_119319 0 0 1 0 2 NPAS2 chr2:101587536 5'GT 101587536 Upstream 28bp
chr7 102040048 102040048 1 + C T OV 102040047 + 102040027 102040067 41 CACGTGTACAGACATCTGCGCCGGAGAGAATATCAGCGACA CACGTGTACAGACATCTGCGCTGGAGAGAATATCAGCGACA < 41bp 0.571307396623136 0.792077377849216 0.84773207 0.6786345 prediction 0.441539962452159 Functional Gain - PRKRIP1 ENSG00000128563 CDS Human protein_coding chr7:102040047 chr7:102040048 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_119326 0 0 1 0 2 PRKRIP1 chr7:102039995 3'AG 102039995 Downstream 54bp
chr7 102040048 102040048 1 + C T OV 102040047 + 102040027 102040067 41 CACGTGTACAGACATCTGCGCCGGAGAGAATATCAGCGACA CACGTGTACAGACATCTGCGCTGGAGAGAATATCAGCGACA < 41bp 0.571307396623136 0.792077377849216 0.84773207 0.6786345 prediction 0.441539962452159 Functional Gain - PRKRIP1 ENSG00000128563 CDS Human protein_coding chr7:102040047 chr7:102040048 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_119326 0 0 1 0 2 PRKRIP1 chr7:102040095 5'GT 102040095 Upstream 48bp
chr16 88873788 88873788 1 + C T UCEC 88873787 + 88873767 88873807 41 GAACGGCTGCCTGAGCTGGCCCGCGTGCTGCGGAGCGTCTT GAACGGCTGCCTGAGCTGGCCTGCGTGCTGCGGAGCGTCTT < 41bp 0.475092143461691 0.720768170858506 0.3741863 0.4072349 prediction 0.441536341717012 Functional Gain - CDT1 ENSG00000167513 CDS Human protein_coding chr16:88873787 chr16:88873788 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_119328 0 0 1 0 1 CDT1 chr16:88873689 3'AG 88873689 Downstream 100bp
chr16 3100096 3100096 1 + C T STAD 3100095 + 3100075 3100115 41 GGGCTGGTCAGGCGGCGTCGCCGGTACGCTCTGAGCGGCAG GGGCTGGTCAGGCGGCGTCGCTGGTACGCTCTGAGCGGCAG < 41bp 0.536314429847922 0.757078796815334 0.57952774 0.43194953 prediction 0.441528733934825 Functional Gain - MMP25 ENSG00000008516 CDS Human protein_coding chr16:3100095 chr16:3100096 nonsynonymous SNV 0.110 3 22 hm5C_associated_SNPs_119329 0 0 0 0 2 MMP25 chr16:3100010 3'AG 3100010 Downstream 87bp
chr16 3100096 3100096 1 + C T STAD 3100095 + 3100075 3100115 41 GGGCTGGTCAGGCGGCGTCGCCGGTACGCTCTGAGCGGCAG GGGCTGGTCAGGCGGCGTCGCTGGTACGCTCTGAGCGGCAG < 41bp 0.536314429847922 0.757078796815334 0.57952774 0.43194953 prediction 0.441528733934825 Functional Gain - MMP25 ENSG00000008516 CDS Human protein_coding chr16:3100095 chr16:3100096 nonsynonymous SNV 0.110 3 22 hm5C_associated_SNPs_119329 0 0 0 0 2 MMP25 chr16:3100145 5'GT 3100145 Upstream 50bp
chr22 44547418 44547418 1 + A G rs149608527 44547415 + 44547395 44547435 41 CAAGCTGAATTTGGAGGTGACGGAACTGGAGACCCAGGTAT CAAGCTGAATTTGGAGGTGACGGGACTGGAGACCCAGGTAT < 41bp 0.564655805035764 0.785415756244204 0.90521324 0.91337025 prediction 0.441519902416881 Functional Gain - PARVB ENSG00000188677 CDS Human protein_coding chr22:44547415 chr22:44547418 nonsynonymous SNV 0.908 2 24 hm5C_associated_SNPs_119331 0 0 1 0 2 PARVB chr22:44547363 3'AG 44547363 Downstream 56bp
chr22 44547418 44547418 1 + A G rs149608527 44547415 + 44547395 44547435 41 CAAGCTGAATTTGGAGGTGACGGAACTGGAGACCCAGGTAT CAAGCTGAATTTGGAGGTGACGGGACTGGAGACCCAGGTAT < 41bp 0.564655805035764 0.785415756244204 0.90521324 0.91337025 prediction 0.441519902416881 Functional Gain - PARVB ENSG00000188677 CDS Human protein_coding chr22:44547415 chr22:44547418 nonsynonymous SNV 0.908 2 24 hm5C_associated_SNPs_119331 0 0 1 0 2 PARVB chr22:44547431 5'GT 44547431 Upstream 14bp
chr17 1674355 1674355 1 + C T SKCM 1674354 + 1674334 1674374 41 CGAACAGAATCCATCATTCACCGGGCTCTCTACTATGACTT CGAACAGAATCCATCATTCACTGGGCTCTCTACTATGACTT < 41bp 0.565239396762699 0.785989540386384 0.8786426 0.77342784 prediction 0.441500287247369 Functional Gain - SERPINF1 ENSG00000132386 CDS Human protein_coding chr17:1674354 chr17:1674355 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_119332 0 0 1 0 1 SERPINF1 chr17:1674323 3'AG 1674323 Downstream 33bp
chr9 847071 847071 1 + C T SKCM 847070 + 847050 847090 41 AGAGAGAACAATGGCAGTAACCCGTGCCTCATGACTGAGTG AGAGAGAACAATGGCAGTAACTCGTGCCTCATGACTGAGTG < 41bp 0.59583367980514 0.816578064892064 0.28862697 0.31882262 prediction 0.441488770173847 Functional Gain - DMRT1 ENSG00000137090 CDS Human protein_coding chr9:847070 chr9:847071 nonsynonymous SNV 0.051 0 22 hm5C_associated_SNPs_119335 0 0 0 0 1 DMRT1 chr9:847143 5'GT 847143 Upstream 73bp
chr15 45560424 45560424 1 + C T SKCM 45560423 + 45560403 45560443 41 CACAGGAAGGAGAGGAATGTCCTGGAAGCTGCCAGCAACGG CACAGGAAGGAGAGGAATGTCTTGGAAGCTGCCAGCAACGG < 41bp 0.476403231719236 0.720735684191386 0.3121923 0.14299387 prediction 0.441471368382773 Functional Gain - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45560423 chr15:45560424 synonymous SNV . 0 22 hm5C_associated_SNPs_119338 0 0 0 0 1 SLC28A2 chr15:45560408 3'AG 45560408 Downstream 17bp
chr1 65851461 65851461 1 + A G COAD 65851458 + 65851438 65851478 41 CGCCCTCACTTCAAGCCTCTCACAATTAAGTCGATCACTGT CGCCCTCACTTCAAGCCTCTCACGATTAAGTCGATCACTGT < 41bp 0.4855051843369 0.720727894091628 0.065719366 0.21253705 prediction 0.441455788183257 Functional Gain - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65851458 chr1:65851461 synonymous SNV . 0 24 hm5C_associated_SNPs_119344 0 0 0 0 1 DNAJC6 chr1:65851395 3'AG 65851395 Downstream 67bp
chr17 18682409 18682409 1 + T C rs77817142 18682407 + 18682387 18682427 41 TTTAGAGTGAACACTGAGTTCGTGCTGTTGACCGTGAAGGA TTTAGAGTGAACACTGAGTTCGCGCTGTTGACCGTGAAGGA < 41bp 0.455949791848058 0.72072569208187 0.023118407 0.017026931 prediction 0.441451384163741 Functional Gain - FBXW10 ENSG00000171931 CDS Human protein_coding chr17:18682407 chr17:18682409 nonsynonymous SNV 0.940 0 23 hm5C_associated_SNPs_119345 0 0 0 0 1 FBXW10 chr17:18682392 3'AG 18682392 Downstream 18bp
chr4 15539705 15539705 1 + C G UCEC 15539701 + 15539681 15539721 41 AGGAGGAGGCCTTGGGAGCCCACGCTGGTCCCGGAGCTAAG AGGAGGAGGCCTTGGGAGCCCACGGTGGTCCCGGAGCTAAG < 41bp 0.637242945875804 0.857967756627398 0.27409256 0.87702656 prediction 0.441449621503188 Functional Gain - CC2D2A ENSG00000048342 CDS Human protein_coding chr4:15539701 chr4:15539705 nonsynonymous SNV 0.828 4 25 hm5C_associated_SNPs_119346 0 0 0 0 1 CC2D2A chr4:15539760 5'GT 15539760 Upstream 56bp
chr3 42701286 42701286 1 + T A STAD 42701282 + 42701262 42701302 41 TCCTGCTGGAGAGCGAGCTGCTGCTGCACAGGCAGACAGAC TCCTGCTGGAGAGCGAGCTGCTGCAGCACAGGCAGACAGAC < 41bp 0.37405403141018 0.720721211928839 0.27441403 0.43753922 prediction 0.441442423857678 Functional Gain - ZBTB47 ENSG00000114853 CDS Human protein_coding chr3:42701282 chr3:42701286 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_119347 0 0 0 0 1 ZBTB47 chr3:42701320 5'GT 42701320 Upstream 35bp
chr5 96329619 96329619 1 + T C LGG 96329617 + 96329597 96329637 41 TCTGTATGACAGTAACACTTCTTCAATGGCGGATAGAAAGC TCTGTATGACAGTAACACTTCTCCAATGGCGGATAGAAAGC < 41bp 0.397107115612325 0.720720990142952 0.4691037 0.9631405 prediction 0.441441980285903 Functional Gain - LNPEP ENSG00000113441 CDS Human protein_coding chr5:96329617 chr5:96329619 nonsynonymous SNV 0.987 2 23 hm5C_associated_SNPs_119348 0 0 1 0 2 LNPEP chr5:96329521 3'AG 96329521 Downstream 99bp
chr5 96329619 96329619 1 + T C LGG 96329617 + 96329597 96329637 41 TCTGTATGACAGTAACACTTCTTCAATGGCGGATAGAAAGC TCTGTATGACAGTAACACTTCTCCAATGGCGGATAGAAAGC < 41bp 0.397107115612325 0.720720990142952 0.4691037 0.9631405 prediction 0.441441980285903 Functional Gain - LNPEP ENSG00000113441 CDS Human protein_coding chr5:96329617 chr5:96329619 nonsynonymous SNV 0.987 2 23 hm5C_associated_SNPs_119348 0 0 1 0 2 LNPEP chr5:96329675 5'GT 96329675 Upstream 57bp
chr15 64418402 64418402 1 + C T PRAD 64418401 + 64418381 64418421 41 GCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTCATAGGT GCTTCATTGTCCCTCCGCCCCTGGAGAAGAGCCTCATAGGT < 41bp 0.60482216753704 0.82553521338104 0.48351163 0.19853348 prediction 0.441426091688001 Functional Gain - SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418401 chr15:64418402 nonsynonymous SNV 0.966 4 22 hm5C_associated_SNPs_119351 0 0 1 0 1 SNX1 chr15:64418419 5'GT 64418419 Upstream 18bp
chr5 150867599 150867599 1 + C T rs199863918 150867598 + 150867578 150867618 41 GGTCATCTCCCTGGTGGGCTCCGTGAGCAGCAGCGCCCTGG GGTCATCTCCCTGGTGGGCTCTGTGAGCAGCAGCGCCCTGG < 41bp 0.5494739632181 0.770179270470233 0.33465385 0.3617095 prediction 0.441410614504265 Functional Gain - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150867598 chr5:150867599 synonymous SNV . 0 22 hm5C_associated_SNPs_119353 0 0 1 0 1 SLC36A1 chr5:150867544 3'AG 150867544 Downstream 56bp
chr10 18827226 18827226 1 + C A COAD 18827222 + 18827202 18827242 41 CCTCCCAGCAGTAGCCTCCCCAACCCTCTCCTTAGCCGTAC CCTCCCAGCAGTAGCCTCCCCAACACTCTCCTTAGCCGTAC < 41bp 0.339608817597494 0.720703575225688 0.12697437 0.11195502 prediction 0.441407150451375 Functional Gain - CACNB2 ENSG00000165995 CDS Human protein_coding chr10:18827222 chr10:18827226 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_119355 0 0 0 0 1 CACNB2 chr10:18827294 5'GT 18827294 Upstream 69bp
chr6 33170149 33170149 1 + T C rs113198103 33170147 + 33170127 33170167 41 AAGGAGGACATGGTCACAGTCATGGACATGGACACGCTCAC AAGGAGGACATGGTCACAGTCACGGACATGGACACGCTCAC < 41bp 0.483817194209922 0.7207027613514 0.295357 0.15836662 prediction 0.4414055227028 Functional Gain - SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33170147 chr6:33170149 synonymous SNV . 0 23 hm5C_associated_SNPs_119356 0 0 1 0 1 SLC39A7 chr6:33170204 5'GT 33170204 Upstream 56bp
chr2 44079540 44079540 1 + C A LUSC 44079539 + 44079519 44079559 41 GCTTAGGCAGTGCGCTGACACCCGCGTGGGCAACATGTACG GCTTAGGCAGTGCGCTGACACACGCGTGGGCAACATGTACG < 41bp 0.60599458283972 0.82669452450327 0.14394963 0.13085118 prediction 0.441399883327101 Functional Gain - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44079539 chr2:44079540 synonymous SNV . 0 22 hm5C_associated_SNPs_119357 0 0 1 0 2 ABCG8 chr2:44079493 3'AG 44079493 Downstream 48bp
chr2 44079540 44079540 1 + C A LUSC 44079539 + 44079519 44079559 41 GCTTAGGCAGTGCGCTGACACCCGCGTGGGCAACATGTACG GCTTAGGCAGTGCGCTGACACACGCGTGGGCAACATGTACG < 41bp 0.60599458283972 0.82669452450327 0.14394963 0.13085118 prediction 0.441399883327101 Functional Gain - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44079539 chr2:44079540 synonymous SNV . 0 22 hm5C_associated_SNPs_119357 0 0 1 0 2 ABCG8 chr2:44079625 5'GT 44079625 Upstream 86bp
chr17 79974915 79974915 1 + C T SKCM 79974914 + 79974894 79974934 41 AGGAGGGGGCGCTGGTCCCCCCTGAGCCCATCCCAGGGACG AGGAGGGGGCGCTGGTCCCCCTTGAGCCCATCCCAGGGACG < 41bp 0.486236031875745 0.72069837259433 0.2255531 0.15821436 prediction 0.44139674518866 Functional Gain - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79974914 chr17:79974915 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_119358 0 0 1 0 2 ASPSCR1 chr17:79974817 3'AG 79974817 Downstream 99bp
chr17 79974915 79974915 1 + C T SKCM 79974914 + 79974894 79974934 41 AGGAGGGGGCGCTGGTCCCCCCTGAGCCCATCCCAGGGACG AGGAGGGGGCGCTGGTCCCCCTTGAGCCCATCCCAGGGACG < 41bp 0.486236031875745 0.72069837259433 0.2255531 0.15821436 prediction 0.44139674518866 Functional Gain - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79974914 chr17:79974915 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_119358 0 0 1 0 2 ASPSCR1 chr17:79974989 5'GT 79974989 Upstream 75bp
chr6 32139186 32139186 1 - G A rs11964847 32139187 - 32139167 32139207 41 CCCACCCTGTGGTTCTGCAGCCCCAGTGCCAAGTACTTCTT CCCACCCTGTGGTTCTGCAGCTCCAGTGCCAAGTACTTCTT < 41bp 0.505182852106921 0.725873962513712 0.15286514 0.31407222 prediction 0.441382220813582 Functional Gain - AGPAT1 ENSG00000204310 CDS Human other chr6:32139187 chr6:32139186 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_119361 0 0 1 0 1 AGPAT1 chr6:32139282 3'AG 32139282 Downstream 97bp
chr19 54418709 54418709 1 + C T COAD 54418708 + 54418688 54418728 41 GCAACATCGGCCACATCCGCCCGCAGAGGACCATTCTGGCT GCAACATCGGCCACATCCGCCTGCAGAGGACCATTCTGGCT < 41bp 0.448141906659374 0.720686566760678 0.24014518 0.33643094 prediction 0.441373133521355 Functional Gain - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54418708 chr19:54418709 nonsynonymous SNV 0.989 5 22 hm5C_associated_SNPs_119363 0 0 0 0 2 CACNG7 chr19:54418619 3'AG 54418619 Downstream 91bp
chr19 54418709 54418709 1 + C T COAD 54418708 + 54418688 54418728 41 GCAACATCGGCCACATCCGCCCGCAGAGGACCATTCTGGCT GCAACATCGGCCACATCCGCCTGCAGAGGACCATTCTGGCT < 41bp 0.448141906659374 0.720686566760678 0.24014518 0.33643094 prediction 0.441373133521355 Functional Gain - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54418708 chr19:54418709 nonsynonymous SNV 0.989 5 22 hm5C_associated_SNPs_119363 0 0 0 0 2 CACNG7 chr19:54418759 5'GT 54418759 Upstream 51bp
chr17 78176044 78176044 1 + C T rs117918077 78176043 + 78176023 78176063 41 TCGGGGGACTCATTCTACATCCGGGTCAACCTGGCCATGGA TCGGGGGACTCATTCTACATCTGGGTCAACCTGGCCATGGA < 41bp 0.57583815388874 0.796519533436511 0.8813126 0.28916574 prediction 0.441362759095542 Functional Gain - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78176043 chr17:78176044 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_119366 1 0 0 0 1 CARD14 chr17:78175979 3'AG 78175979 Downstream 66bp
chr5 1814555 1814555 1 + C T LUSC 1814554 + 1814534 1814574 41 GGCGGGGGAGCTCTTGGCCACCCAAAAGTGTATATAAACTT GGCGGGGGAGCTCTTGGCCACTCAAAAGTGTATATAAACTT < 41bp 0.450927155750234 0.720677447971207 0.05819592 0.11690053 prediction 0.441354895942415 Functional Gain - NDUFS6 ENSG00000145494 CDS Human protein_coding chr5:1814554 chr5:1814555 nonsynonymous SNV 0.346 5 22 hm5C_associated_SNPs_119369 0 0 1 0 1 NDUFS6 chr5:1814575 5'GT 1814575 Upstream 21bp
chr3 1363411 1363411 1 + C A BLCA 1363407 + 1363387 1363427 41 AAGTCAAGTACAGCAAATCCCAAGCTATCCTTGAAATCCCG AAGTCAAGTACAGCAAATCCCAAGATATCCTTGAAATCCCG < 41bp 0.314368460754376 0.720677035214952 0.25916773 0.2904323 prediction 0.441354070429904 Functional Gain - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1363407 chr3:1363411 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_119370 0 0 0 0 1 CNTN6 chr3:1363334 3'AG 1363334 Downstream 78bp
chr22 37322094 37322094 1 + C T SKCM 37322093 + 37322073 37322113 41 CCTGGTCAGCCTGCCCCCATCCCCGCTGCGTGCCCAGGAGA CCTGGTCAGCCTGCCCCCATCTCCGCTGCGTGCCCAGGAGA < 41bp 0.445797842914208 0.720672402180288 0.24269676 0.33613253 prediction 0.441344804360577 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37322093 chr22:37322094 nonsynonymous SNV 0.019 0 22 hm5C_associated_SNPs_119371 0 0 0 0 1 CSF2RB chr22:37322029 3'AG 37322029 Downstream 66bp
chr3 126676327 126676327 1 + C T UCEC 126676326 + 126676306 126676346 41 TCCACTGCTACCGAGATCGCCCGCATGAGGTGCTGCTGTGC TCCACTGCTACCGAGATCGCCTGCATGAGGTGCTGCTGTGC < 41bp 0.564795470979105 0.78546336971333 0.07615322 0.32885835 prediction 0.441335797468451 Functional Gain - CHCHD6 ENSG00000159685 CDS Human protein_coding chr3:126676326 chr3:126676327 nonsynonymous SNV 0.602 0 22 hm5C_associated_SNPs_119372 0 0 1 0 2 CHCHD6 chr3:126676259 3'AG 126676259 Downstream 69bp
chr3 126676327 126676327 1 + C T UCEC 126676326 + 126676306 126676346 41 TCCACTGCTACCGAGATCGCCCGCATGAGGTGCTGCTGTGC TCCACTGCTACCGAGATCGCCTGCATGAGGTGCTGCTGTGC < 41bp 0.564795470979105 0.78546336971333 0.07615322 0.32885835 prediction 0.441335797468451 Functional Gain - CHCHD6 ENSG00000159685 CDS Human protein_coding chr3:126676326 chr3:126676327 nonsynonymous SNV 0.602 0 22 hm5C_associated_SNPs_119372 0 0 1 0 2 CHCHD6 chr3:126676394 5'GT 126676394 Upstream 68bp
chr4 25677835 25677835 1 + C G rs147732740 25677834 + 25677814 25677854 41 CCGTTCACTCGCCTGCCCATCCGCATGGCCAAGGGGCTGGG CCGTTCACTCGCCTGCCCATCGGCATGGCCAAGGGGCTGGG < 41bp 0.670295505306832 0.890961900328623 0.06781629 0.39904523 prediction 0.441332790043583 Functional Gain - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25677834 chr4:25677835 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_119373 0 0 0 0 1 SLC34A2 chr4:25677757 3'AG 25677757 Downstream 79bp
chr11 34158214 34158214 1 + T C UCEC 34158212 + 34158192 34158232 41 GTCAGCTTGTTGGAAGAGGTCATCACTCCCCGGAAGGACCT GTCAGCTTGTTGGAAGAGGTCACCACTCCCCGGAAGGACCT < 41bp 0.41520660235459 0.720665129835557 0.09462419 0.1037367 prediction 0.441330259671114 Functional Gain - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34158212 chr11:34158214 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_119374 0 0 1 0 1 NAT10 chr11:34158189 3'AG 34158189 Downstream 26bp
chr19 36278576 36278576 1 + C T SKCM 36278575 + 36278555 36278595 41 CCCGGCTTCTTCTCCCCAGCCCCCAGGGAGTGCCTGCCACC CCCGGCTTCTTCTCCCCAGCCTCCAGGGAGTGCCTGCCACC < 41bp 0.455155775971504 0.720655158653728 0.15177998 0.9493365 prediction 0.441310317307457 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36278575 chr19:36278576 nonsynonymous SNV 0.485 3 22 hm5C_associated_SNPs_119379 0 0 1 0 1 ARHGAP33 chr19:36278546 3'AG 36278546 Downstream 31bp
chr7 44797513 44797513 1 + C T SKCM 44797512 + 44797492 44797532 41 GGTCCCCGGGGGCCTAGTGTCCCCGCTGGCATGAACCCTAC GGTCCCCGGGGGCCTAGTGTCTCCGCTGGCATGAACCCTAC < 41bp 0.609932879899965 0.830586523710685 0.3957978 0.77369475 prediction 0.44130728762144 Functional Gain - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44797512 chr7:44797513 nonsynonymous SNV 0.207 0 22 hm5C_associated_SNPs_119380 0 0 1 0 1 ZMIZ2 chr7:44797447 3'AG 44797447 Downstream 67bp
chr4 69978272 69978272 1 + C A COAD 69978271 + 69978251 69978291 41 TGGATTGAATTTGTCATGCGCCACAAAGGAGCTAAACACCT TGGATTGAATTTGTCATGCGCAACAAAGGAGCTAAACACCT < 41bp 0.481088100631533 0.720651686986075 0.022886097 0.028997868 prediction 0.441303373972149 Functional Gain - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69978271 chr4:69978272 nonsynonymous SNV 0.912 0 22 hm5C_associated_SNPs_119381 0 0 1 0 1 UGT2B7 chr4:69978175 3'AG 69978175 Downstream 98bp
chr2 73900022 73900022 1 + C T rs148988790 73900021 + 73900001 73900041 41 ACTCATGACCCTGGCATCTCCCGGTTGGAACCAGTAACCAA ACTCATGACCCTGGCATCTCCTGGTTGGAACCAGTAACCAA < 41bp 0.519289475993438 0.73994048882188 0.023559362 0.064035475 prediction 0.441302025656884 Functional Gain - ALMS1P1 ENSG00000163016 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:73900021 chr2:73900022 . . 0 22 hm5C_associated_SNPs_119383 0 0 0 0 1 ALMS1P1 chr2:73899935 3'AG 73899935 Downstream 88bp
chrX 115590020 115590020 1 + C A UCEC 115590019 + 115589999 115590039 41 GCTTCTAACTGGGGTCCATACCTGGAACAACATCGTGGGGA GCTTCTAACTGGGGTCCATACATGGAACAACATCGTGGGGA < 41bp 0.469233710569976 0.720650240343575 0.094246686 0.24176389 prediction 0.44130048068715 Functional Gain - SLC6A14 ENSG00000087916 CDS Human other chrX:115590019 chrX:115590020 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_119384 0 0 1 0 1 SLC6A14 chrX:115589975 3'AG 115589975 Downstream 46bp
chr2 11284199 11284199 1 + C T rs375552438 11284198 + 11284178 11284218 41 TTCTTCTTCACAGAAGGGGCCCGGAAGAAGAAGCTGGAGGA TTCTTCTTCACAGAAGGGGCCTGGAAGAAGAAGCTGGAGGA < 41bp 0.536184278325525 0.756829475548882 0.3114264 0.15734887 prediction 0.441290394446714 Functional Gain - C2orf50 ENSG00000150873 CDS Human protein_coding chr2:11284198 chr2:11284199 nonsynonymous SNV 0.582 3 22 hm5C_associated_SNPs_119385 0 0 0 0 1 C2orf50 chr2:11284268 5'GT 11284268 Upstream 70bp
chr10 14939500 14939500 1 + T C PAAD 14939498 + 14939478 14939518 41 ATTAAAAGAATGAGTTTTGTCATGGAATATGTTGGAGAGGT ATTAAAAGAATGAGTTTTGTCACGGAATATGTTGGAGAGGT < 41bp 0.446415330657819 0.720643947750635 0.5073543 0.4553007 prediction 0.44128789550127 Functional Gain - SUV39H2 ENSG00000152455 CDS Human protein_coding chr10:14939498 chr10:14939500 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_119387 0 0 1 0 1 SUV39H2 chr10:14939516 5'GT 14939516 Upstream 17bp
chr11 66191311 66191311 1 + T C COAD 66191309 + 66191289 66191329 41 TCTTCTCTCCTCTCCAGTGACATGGAAGCCTGGAGCCTCCG TCTTCTCTCCTCTCCAGTGACACGGAAGCCTGGAGCCTCCG < 41bp 0.456558012288754 0.720642879289481 0.85405105 0.8389926 prediction 0.441285758578962 Functional Gain - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66191309 chr11:66191311 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_119388 0 0 0 0 1 NPAS4 chr11:66191306 3'AG 66191306 Downstream 6bp
chr12 12788822 12788822 1 + C T OV 12788821 + 12788801 12788841 41 AGTGCAAGAGAATGCCGAGCCCGAAAAAAGCTGAGATATCA AGTGCAAGAGAATGCCGAGCCTGAAAAAAGCTGAGATATCA < 41bp 0.598124897854975 0.818751259019171 0.19157708 0.15781206 prediction 0.441252722328391 Functional Gain - CREBL2 ENSG00000111269 CDS Human protein_coding chr12:12788821 chr12:12788822 stopgain 0.994 1 22 hm5C_associated_SNPs_119392 0 0 1 0 1 CREBL2 chr12:12788908 5'GT 12788908 Upstream 87bp
chr17 57737878 57737878 1 + C T STAD 57737877 + 57737857 57737897 41 GGTGCTGAAGAACTCTTTGCCCGGAAATTTAATGCTCTTTT GGTGCTGAAGAACTCTTTGCCTGGAAATTTAATGCTCTTTT < 41bp 0.563221766981459 0.78384677293912 0.15390557 0.0302051 prediction 0.441250011915321 Functional Gain - CLTC ENSG00000141367 CDS Human protein_coding chr17:57737877 chr17:57737878 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_119393 0 0 1 0 1 CLTC chr17:57737949 5'GT 57737949 Upstream 72bp
chr16 69481158 69481158 1 + T C COAD 69481155 + 69481135 69481175 41 ATGCCAGAGAAATGCTAAAGCAGTACTACATTGGTGATATC ATGCCAGAGAAATGCTAAAGCAGCACTACATTGGTGATATC < 41bp 0.511518627248185 0.732142615311687 0.24346557 0.10490087 prediction 0.441247976127005 Functional Gain - CYB5B ENSG00000103018 CDS Human protein_coding chr16:69481155 chr16:69481158 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_119394 0 0 1 0 1 CYB5B chr16:69481181 5'GT 69481181 Upstream 24bp
chr19 55107357 55107357 1 + C T rs35066441 55107356 + 55107336 55107376 41 CGGTGCATACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCG CGGTGCATACAACCTCTCCTCTGAGTGGTCGGCCCCCAGCG < 41bp 0.54800565967307 0.768625319876912 0.111050695 0.018701315 prediction 0.441239320407684 Functional Gain - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55107356 chr19:55107357 synonymous SNV . 0 22 hm5C_associated_SNPs_119397 0 0 0 0 1 LILRA1 chr19:55107400 5'GT 55107400 Upstream 44bp
chr6 44275062 44275062 1 - G A UCEC 44275063 - 44275043 44275083 41 GGGCGCACAGACACAGCGTACCGCGTGGTGGCTGACCACAT GGGCGCACAGACACAGCGTACTGCGTGGTGGCTGACCACAT < 41bp 0.45823278027108 0.720616119588457 0.35670325 0.19848901 prediction 0.441232239176914 Functional Gain - AARS2 ENSG00000124608 CDS Human protein_coding chr6:44275063 chr6:44275062 nonsynonymous SNV 0.749 4 22 hm5C_associated_SNPs_119400 0 0 1 0 2 AARS2 chr6:44274986 5'GT 44274986 Upstream 77bp
chr6 44275062 44275062 1 - G A UCEC 44275063 - 44275043 44275083 41 GGGCGCACAGACACAGCGTACCGCGTGGTGGCTGACCACAT GGGCGCACAGACACAGCGTACTGCGTGGTGGCTGACCACAT < 41bp 0.45823278027108 0.720616119588457 0.35670325 0.19848901 prediction 0.441232239176914 Functional Gain - AARS2 ENSG00000124608 CDS Human protein_coding chr6:44275063 chr6:44275062 nonsynonymous SNV 0.749 4 22 hm5C_associated_SNPs_119400 0 0 1 0 2 AARS2 chr6:44275131 3'AG 44275131 Downstream 70bp
chr3 10167974 10167974 1 + A G STAD 10167971 + 10167951 10167991 41 AGGTGACAAAAGGTGAGACACTCACCTAGAACAGTGCCGTG AGGTGACAAAAGGTGAGACACTCGCCTAGAACAGTGCCGTG < 41bp 0.518001216210573 0.738611341160661 0.22659427 0.46920577 prediction 0.441220249900174 Functional Gain - BRK1 ENSG00000254999;ENSG00000254999 exonic;splicing Human protein_coding chr3:10167971 chr3:10167974 nonsynonymous SNV 0.928 1 24 hm5C_associated_SNPs_119401 0 0 1 0 1 BRK1 chr3:10167953 3'AG 10167953 Downstream 22bp
chr20 30411335 30411335 1 + C T STAD 30411334 + 30411314 30411354 41 CCGCATGGTGGAGCTGAGGACCGGGAATGTCAGCAGTGAAT CCGCATGGTGGAGCTGAGGACTGGGAATGTCAGCAGTGAAT < 41bp 0.563953384102047 0.784554702409884 0.27457315 0.15781477 prediction 0.441202636615673 Functional Gain - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30411334 chr20:30411335 synonymous SNV . 0 22 hm5C_associated_SNPs_119404 1 0 0 0 1 MYLK2 chr20:30411280 3'AG 30411280 Downstream 56bp
chr1 87805833 87805833 1 + T C LUAD 87805831 + 87805811 87805851 41 CATGATAGACCTACAGCTCTCATCAATGGCCATTTGAATTC CATGATAGACCTACAGCTCTCACCAATGGCCATTTGAATTC < 41bp 0.647959778005762 0.868560912885818 0.096836954 0.054105878 prediction 0.441202269760114 Functional Gain - LMO4 ENSG00000143013 CDS Human protein_coding chr1:87805831 chr1:87805833 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_119405 0 0 1 0 1 LMO4 chr1:87805885 5'GT 87805885 Upstream 53bp
chr1 53930484 53930484 1 + C A UCEC 53930480 + 53930460 53930500 41 CCACCACCTCCATCATCTTTCTCACTGACCGTCCTGTTTGA CCACCACCTCCATCATCTTTCTCAATGACCGTCCTGTTTGA < 41bp 0.290147664927009 0.720589973866753 0.22874436 0.8961571 prediction 0.441179947733507 Functional Gain - DMRTB1 ENSG00000143006 CDS Human protein_coding chr1:53930480 chr1:53930484 nonsynonymous SNV 0.094 2 25 hm5C_associated_SNPs_119409 0 0 0 0 1 DMRTB1 chr1:53930520 5'GT 53930520 Upstream 37bp
chr22 24919646 24919646 1 + C A rs113975342 24919645 + 24919625 24919665 41 GTGGCAGCCCCTGACAGCAGCCGGACTCCTGGGCTGTCCCG GTGGCAGCCCCTGACAGCAGCAGGACTCCTGGGCTGTCCCG < 41bp 0.607400313252935 0.827973259123961 0.78841877 0.9071748 prediction 0.441145891742053 Functional Gain - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24919645 chr22:24919646 synonymous SNV . 0 22 hm5C_associated_SNPs_119412 2 0 0 0 2 UPB1 chr22:24919587 3'AG 24919587 Downstream 60bp
chr22 24919646 24919646 1 + C A rs113975342 24919645 + 24919625 24919665 41 GTGGCAGCCCCTGACAGCAGCCGGACTCCTGGGCTGTCCCG GTGGCAGCCCCTGACAGCAGCAGGACTCCTGGGCTGTCCCG < 41bp 0.607400313252935 0.827973259123961 0.78841877 0.9071748 prediction 0.441145891742053 Functional Gain - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24919645 chr22:24919646 synonymous SNV . 0 22 hm5C_associated_SNPs_119412 2 0 0 0 2 UPB1 chr22:24919741 5'GT 24919741 Upstream 96bp
chr16 84228960 84228960 1 + C T STAD 84228959 + 84228939 84228979 41 CAAGCTGGTGGCTCTGGGCACCGGCAGCAGCTGCTGTGCTG CAAGCTGGTGGCTCTGGGCACTGGCAGCAGCTGCTGTGCTG < 41bp 0.533013164115656 0.753579561183265 0.6999214 0.5331884 prediction 0.441132794135218 Functional Gain - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84228959 chr16:84228960 synonymous SNV . 0 22 hm5C_associated_SNPs_119413 0 0 0 0 3 ADAD2 chr16:84228872 3'AG 84228872 Downstream 89bp
chr16 84228960 84228960 1 + C T STAD 84228959 + 84228939 84228979 41 CAAGCTGGTGGCTCTGGGCACCGGCAGCAGCTGCTGTGCTG CAAGCTGGTGGCTCTGGGCACTGGCAGCAGCTGCTGTGCTG < 41bp 0.533013164115656 0.753579561183265 0.6999214 0.5331884 prediction 0.441132794135218 Functional Gain - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84228959 chr16:84228960 synonymous SNV . 0 22 hm5C_associated_SNPs_119413 0 0 0 0 3 ADAD2 chr16:84228902 3'AG 84228902 Downstream 59bp
chr16 84228960 84228960 1 + C T STAD 84228959 + 84228939 84228979 41 CAAGCTGGTGGCTCTGGGCACCGGCAGCAGCTGCTGTGCTG CAAGCTGGTGGCTCTGGGCACTGGCAGCAGCTGCTGTGCTG < 41bp 0.533013164115656 0.753579561183265 0.6999214 0.5331884 prediction 0.441132794135218 Functional Gain - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84228959 chr16:84228960 synonymous SNV . 0 22 hm5C_associated_SNPs_119413 0 0 0 0 3 ADAD2 chr16:84229052 5'GT 84229052 Upstream 93bp
chr2 157406233 157406233 1 + C A HNSC 157406232 + 157406212 157406252 41 TTGCTCAAGAAGACAGACCCCCAGACAGGGAAAGTGCGTGT TTGCTCAAGAAGACAGACCCCAAGACAGGGAAAGTGCGTGT < 41bp 0.597917297885572 0.818473581497389 0.012445778 0.03145963 prediction 0.441112567223634 Functional Gain - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157406232 chr2:157406233 nonsynonymous SNV 0.633 0 22 hm5C_associated_SNPs_119416 0 0 0 1 1 GPD2 chr2:157406284 5'GT 157406284 Upstream 52bp
chrX 100492712 100492712 1 + T A STAD 100492708 + 100492688 100492728 41 AGGATGAGGAGTTGTCAGCTCAGCTGCCCCTACAGGGGGAT AGGATGAGGAGTTGTCAGCTCAGCAGCCCCTACAGGGGGAT < 41bp 0.379432084846917 0.720549489850645 0.3401328 0.28193426 prediction 0.441098979701291 Functional Gain - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100492708 chrX:100492712 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_119419 0 0 0 0 1 DRP2 chrX:100492764 5'GT 100492764 Upstream 53bp
chr11 61503251 61503251 1 + C T SKCM 61503250 + 61503230 61503270 41 CGGGTGATGCTGAGCGCCTCCCCGTGGAGGGGCACCACGGC CGGGTGATGCTGAGCGCCTCCTCGTGGAGGGGCACCACGGC < 41bp 0.453998479984199 0.72054494756593 0.3271643 0.21301782 prediction 0.441089895131861 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503250 chr11:61503251 nonsynonymous SNV 0.922 3 22 hm5C_associated_SNPs_119421 0 0 1 0 2 DAGLA chr11:61503211 3'AG 61503211 Downstream 41bp
chr11 61503251 61503251 1 + C T SKCM 61503250 + 61503230 61503270 41 CGGGTGATGCTGAGCGCCTCCCCGTGGAGGGGCACCACGGC CGGGTGATGCTGAGCGCCTCCTCGTGGAGGGGCACCACGGC < 41bp 0.453998479984199 0.72054494756593 0.3271643 0.21301782 prediction 0.441089895131861 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503250 chr11:61503251 nonsynonymous SNV 0.922 3 22 hm5C_associated_SNPs_119421 0 0 1 0 2 DAGLA chr11:61503288 5'GT 61503288 Upstream 38bp
chr11 31653890 31653890 1 + C T UCEC 31653889 + 31653869 31653909 41 ACCAAGTTCCTCTATGTTCTCCGTGGTCTTCTGAGAACCTC ACCAAGTTCCTCTATGTTCTCTGTGGTCTTCTGAGAACCTC < 41bp 0.473067678673961 0.720544192585283 0.098807365 0.03996408 prediction 0.441088385170567 Functional Gain - ELP4 ENSG00000109911 CDS Human protein_coding chr11:31653889 chr11:31653890 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_119422 0 0 0 0 1 ELP4 chr11:31653952 5'GT 31653952 Upstream 63bp
chr11 118252125 118252125 1 - G A LUAD 118252126 - 118252106 118252146 41 GAGAAAAATGAGAAAATCACCCAGGTTATCTGCAAAAAATT GAGAAAAATGAGAAAATCACCTAGGTTATCTGCAAAAAATT < 41bp 0.495725003912829 0.720543663622159 0.31592065 0.18591756 prediction 0.441087327244317 Functional Gain - UBE4A ENSG00000110344 CDS Human protein_coding chr11:118252126 chr11:118252125 synonymous SNV . 0 22 hm5C_associated_SNPs_119423 0 0 0 0 1 UBE4A chr11:118252222 3'AG 118252222 Downstream 98bp
chr12 133197925 133197925 1 + T C STAD 133197923 + 133197903 133197943 41 TCCGCATTGACGTCATTGTGCATGGACAGGTGCCTGCACCT TCCGCATTGACGTCATTGTGCACGGACAGGTGCCTGCACCT < 41bp 0.579257700975761 0.799800814103901 0.13295057 0.17543039 prediction 0.441086226256278 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133197923 chr12:133197925 synonymous SNV . 0 23 hm5C_associated_SNPs_119424 0 0 0 0 3 P2RX2 chr12:133197841 3'AG 133197841 Downstream 85bp
chr12 133197925 133197925 1 + T C STAD 133197923 + 133197903 133197943 41 TCCGCATTGACGTCATTGTGCATGGACAGGTGCCTGCACCT TCCGCATTGACGTCATTGTGCACGGACAGGTGCCTGCACCT < 41bp 0.579257700975761 0.799800814103901 0.13295057 0.17543039 prediction 0.441086226256278 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133197923 chr12:133197925 synonymous SNV . 0 23 hm5C_associated_SNPs_119424 0 0 0 0 3 P2RX2 chr12:133197931 5'GT 133197931 Upstream 7bp
chr12 133197925 133197925 1 + T C STAD 133197923 + 133197903 133197943 41 TCCGCATTGACGTCATTGTGCATGGACAGGTGCCTGCACCT TCCGCATTGACGTCATTGTGCACGGACAGGTGCCTGCACCT < 41bp 0.579257700975761 0.799800814103901 0.13295057 0.17543039 prediction 0.441086226256278 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133197923 chr12:133197925 synonymous SNV . 0 23 hm5C_associated_SNPs_119424 0 0 0 0 3 P2RX2 chr12:133197950 5'GT 133197950 Upstream 26bp
chr12 16112797 16112797 1 + C T UCEC 16112796 + 16112776 16112816 41 CGCCGTTTGTGTTTATCCCGCCCGGGTGTGTGATGCTGTAA CGCCGTTTGTGTTTATCCCGCTCGGGTGTGTGATGCTGTAA < 41bp 0.598527060165963 0.81906529657651 0.05741602 0.0210706 prediction 0.441076472821094 Functional Gain - DERA ENSG00000023697 CDS Human protein_coding chr12:16112796 chr12:16112797 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_119426 0 0 1 0 2 DERA chr12:16112763 3'AG 16112763 Downstream 35bp
chr12 16112797 16112797 1 + C T UCEC 16112796 + 16112776 16112816 41 CGCCGTTTGTGTTTATCCCGCCCGGGTGTGTGATGCTGTAA CGCCGTTTGTGTTTATCCCGCTCGGGTGTGTGATGCTGTAA < 41bp 0.598527060165963 0.81906529657651 0.05741602 0.0210706 prediction 0.441076472821094 Functional Gain - DERA ENSG00000023697 CDS Human protein_coding chr12:16112796 chr12:16112797 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_119426 0 0 1 0 2 DERA chr12:16112858 5'GT 16112858 Upstream 62bp
chr12 69986785 69986785 1 + T C rs201962311 69986782 + 69986762 69986802 41 GGTTCCCGGGTAAGAGTTGACTCTACAGCAAAGGTTGCAGA GGTTCCCGGGTAAGAGTTGACTCCACAGCAAAGGTTGCAGA < 41bp 0.554773258360807 0.775310039457105 0.89400077 0.90733594 prediction 0.441073562192596 Functional Gain - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69986782 chr12:69986785 synonymous SNV . 0 24 hm5C_associated_SNPs_119427 0 0 1 1 2 CCT2 chr12:69986756 3'AG 69986756 Downstream 30bp
chr12 69986785 69986785 1 + T C rs201962311 69986782 + 69986762 69986802 41 GGTTCCCGGGTAAGAGTTGACTCTACAGCAAAGGTTGCAGA GGTTCCCGGGTAAGAGTTGACTCCACAGCAAAGGTTGCAGA < 41bp 0.554773258360807 0.775310039457105 0.89400077 0.90733594 prediction 0.441073562192596 Functional Gain - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69986782 chr12:69986785 synonymous SNV . 0 24 hm5C_associated_SNPs_119427 0 0 1 1 2 CCT2 chr12:69986883 5'GT 69986883 Upstream 99bp
chr1 92495836 92495836 1 + C A CESC 92495832 + 92495812 92495852 41 CTCCCGCGTGCCTGAGCGACCCCTCCTTGGGCACCCACTGC CTCCCGCGTGCCTGAGCGACCCCTACTTGGGCACCCACTGC < 41bp 0.32831352099787 0.720530535872637 0.06614733 0.18248907 prediction 0.441061071745275 Functional Gain - EPHX4 ENSG00000172031 CDS Human protein_coding chr1:92495832 chr1:92495836 nonsynonymous SNV 0.968 2 25 hm5C_associated_SNPs_119429 0 0 0 0 1 EPHX4 chr1:92495867 5'GT 92495867 Upstream 32bp
chr6 109282895 109282895 1 + A G UCEC 109282892 + 109282872 109282912 41 AGACAAAAAGCTATATATTGCTGAATGTAAGGTTCAGAGTT AGACAAAAAGCTATATATTGCTGGATGTAAGGTTCAGAGTT < 41bp 0.495113779443613 0.720529380679667 0.12285066 0.40530664 prediction 0.441058761359333 Functional Gain - ARMC2 ENSG00000118690 CDS Human protein_coding chr6:109282892 chr6:109282895 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_119430 0 0 0 0 1 ARMC2 chr6:109282897 5'GT 109282897 Upstream 3bp
chr15 25475879 25475879 1 + C A HNSC 25475878 + 25475858 25475898 41 TCCATCAGCCAGGTGCTCAGCCCCAGTGCACTGAAGCTCCA TCCATCAGCCAGGTGCTCAGCACCAGTGCACTGAAGCTCCA < 41bp 0.524698478441991 0.745227174700737 0.41893095 0.40971422 prediction 0.441057392517493 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25475878 chr15:25475879 . . 0 22 hm5C_associated_SNPs_119431 0 0 0 0 2 SNHG14 chr15:25475817 3'AG 25475817 Downstream 63bp
chr15 25475879 25475879 1 + C A HNSC 25475878 + 25475858 25475898 41 TCCATCAGCCAGGTGCTCAGCCCCAGTGCACTGAAGCTCCA TCCATCAGCCAGGTGCTCAGCACCAGTGCACTGAAGCTCCA < 41bp 0.524698478441991 0.745227174700737 0.41893095 0.40971422 prediction 0.441057392517493 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25475878 chr15:25475879 . . 0 22 hm5C_associated_SNPs_119431 0 0 0 0 2 SNHG14 chr15:25475928 5'GT 25475928 Upstream 50bp
chr5 80550908 80550908 1 + C T COAD 80550907 + 80550887 80550927 41 AGCCTGCCTCCAGCCTGCACCCGGGCCGAGCGAAGGGAGGT AGCCTGCCTCCAGCCTGCACCTGGGCCGAGCGAAGGGAGGT < 41bp 0.533809811430484 0.754325668965045 0.54042244 0.3398501 prediction 0.441031715069123 Functional Gain - CKMT2 ENSG00000131730 CDS Human protein_coding chr5:80550907 chr5:80550908 nonsynonymous SNV 0.026 4 22 hm5C_associated_SNPs_119435 0 0 0 0 1 CKMT2 chr5:80550812 3'AG 80550812 Downstream 97bp
chr8 22412491 22412491 1 + C G rs74400886 22412490 + 22412470 22412510 41 GACGAGATGCTTCCCAGCACCCGGGTAGGTCTGCTCAGGAG GACGAGATGCTTCCCAGCACCGGGGTAGGTCTGCTCAGGAG < 41bp 0.66226972329044 0.882784979731022 0.35841238 0.91119987 prediction 0.441030512881165 Functional Gain - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22412490 chr8:22412491 nonsynonymous SNV 0.812 1 22 hm5C_associated_SNPs_119436 0 0 0 0 1 SORBS3 chr8:22412493 5'GT 22412493 Upstream 3bp
chr13 76135013 76135013 1 + A G LUAD 76135010 + 76134990 76135030 41 CTTACTTCTCTTTCCTATTACAGAAAAGGTAATTGTTATGT CTTACTTCTCTTTCCTATTACAGGAAAGGTAATTGTTATGT < 41bp 0.517370797593271 0.737881643430877 0.31892002 0.76329863 prediction 0.441021691675212 Functional Gain - UCHL3 ENSG00000118939 CDS Human protein_coding chr13:76135010 chr13:76135013 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_119440 0 0 1 0 1 UCHL3 chr13:76135017 5'GT 76135017 Upstream 5bp
chrX 153628866 153628866 1 + A G STAD 153628863 + 153628843 153628883 41 AGGGCACTGTGGCCAGGGTTCACATTGGCCAAGTTATCATG AGGGCACTGTGGCCAGGGTTCACGTTGGCCAAGTTATCATG < 41bp 0.473292470605329 0.720503795731493 0.09970647 0.11547771 prediction 0.441007591462987 Functional Gain - RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628863 chrX:153628866 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_119443 0 0 0 0 1 RPL10 chrX:153628805 3'AG 153628805 Downstream 62bp
chr20 31825964 31825964 1 + T C COAD 31825962 + 31825942 31825982 41 GAGGTACTTCTGGTGGCCTCCTTGGGGGACTGCTTGGAAAA GAGGTACTTCTGGTGGCCTCCTCGGGGGACTGCTTGGAAAA < 41bp 0.631351656597268 0.851851411120623 0.18513006 0.3620731 prediction 0.44099950904671 Functional Gain - BPIFA1 ENSG00000198183 CDS Human protein_coding chr20:31825962 chr20:31825964 synonymous SNV . 0 23 hm5C_associated_SNPs_119444 0 0 0 0 1 BPIFA1 chr20:31826020 5'GT 31826020 Upstream 57bp
chr4 72215682 72215682 1 + C A UCEC 72215681 + 72215661 72215701 41 GTGGGGAAAGATGGAGCAAGCCCCATGTGGCCACATTGTCC GTGGGGAAAGATGGAGCAAGCACCATGTGGCCACATTGTCC < 41bp 0.485864694469865 0.720497952663051 0.33537015 0.088906646 prediction 0.440995905326101 Functional Gain - SLC4A4 ENSG00000080493 CDS Human protein_coding chr4:72215681 chr4:72215682 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_119445 0 0 0 0 1 SLC4A4 chr4:72215629 3'AG 72215629 Downstream 54bp
chr17 7345106 7345106 1 + C T rs114518704 7345105 + 7345085 7345125 41 CCACCTGCAGCCCACTTCAACCTGATCCCTGTGGGCCTCCG CCACCTGCAGCCCACTTCAACTTGATCCCTGTGGGCCTCCG < 41bp 0.457914134440789 0.720477752443367 0.1498181 0.14055964 prediction 0.440955504886734 Functional Gain - FGF11 ENSG00000161958 CDS Human protein_coding chr17:7345105 chr17:7345106 synonymous SNV . 0 22 hm5C_associated_SNPs_119450 0 0 0 1 2 FGF11 chr17:7345095 3'AG 7345095 Downstream 12bp
chr17 7345106 7345106 1 + C T rs114518704 7345105 + 7345085 7345125 41 CCACCTGCAGCCCACTTCAACCTGATCCCTGTGGGCCTCCG CCACCTGCAGCCCACTTCAACTTGATCCCTGTGGGCCTCCG < 41bp 0.457914134440789 0.720477752443367 0.1498181 0.14055964 prediction 0.440955504886734 Functional Gain - FGF11 ENSG00000161958 CDS Human protein_coding chr17:7345105 chr17:7345106 synonymous SNV . 0 22 hm5C_associated_SNPs_119450 0 0 0 1 2 FGF11 chr17:7345198 5'GT 7345198 Upstream 93bp
chr12 56733533 56733533 1 + A G LGG 56733530 + 56733510 56733550 41 TTATGAGAAGCTGCTAGGATCGGATATTTTCACAGGGGAGC TTATGAGAAGCTGCTAGGATCGGGTATTTTCACAGGGGAGC < 41bp 0.581035676407801 0.801510180680725 0.41742772 0.8169726 prediction 0.440949008545849 Functional Gain - IL23A ENSG00000110944 CDS Human protein_coding chr12:56733530 chr12:56733533 nonsynonymous SNV 0.984 4 24 hm5C_associated_SNPs_119451 0 0 0 0 2 IL23A chr12:56733475 3'AG 56733475 Downstream 59bp
chr12 56733533 56733533 1 + A G LGG 56733530 + 56733510 56733550 41 TTATGAGAAGCTGCTAGGATCGGATATTTTCACAGGGGAGC TTATGAGAAGCTGCTAGGATCGGGTATTTTCACAGGGGAGC < 41bp 0.581035676407801 0.801510180680725 0.41742772 0.8169726 prediction 0.440949008545849 Functional Gain - IL23A ENSG00000110944 CDS Human protein_coding chr12:56733530 chr12:56733533 nonsynonymous SNV 0.984 4 24 hm5C_associated_SNPs_119451 0 0 0 0 2 IL23A chr12:56733621 5'GT 56733621 Upstream 89bp
chr2 206630233 206630233 1 + C T STAD 206630232 + 206630212 206630252 41 AGTGATAGGGAAAGGACGTTCCGGAGAGATTGCCATTGATG AGTGATAGGGAAAGGACGTTCTGGAGAGATTGCCATTGATG < 41bp 0.593426378413079 0.813899567405115 0.90222794 0.68871695 prediction 0.440946377984071 Functional Gain - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206630232 chr2:206630233 synonymous SNV . 0 22 hm5C_associated_SNPs_119452 0 0 0 0 2 NRP2 chr2:206630198 3'AG 206630198 Downstream 36bp
chr2 206630233 206630233 1 + C T STAD 206630232 + 206630212 206630252 41 AGTGATAGGGAAAGGACGTTCCGGAGAGATTGCCATTGATG AGTGATAGGGAAAGGACGTTCTGGAGAGATTGCCATTGATG < 41bp 0.593426378413079 0.813899567405115 0.90222794 0.68871695 prediction 0.440946377984071 Functional Gain - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206630232 chr2:206630233 synonymous SNV . 0 22 hm5C_associated_SNPs_119452 0 0 0 0 2 NRP2 chr2:206630294 5'GT 206630294 Upstream 62bp
chr7 141420768 141420768 1 + A G rs6967301 141420765 + 141420745 141420785 41 TTGCATGAAGTTTATGCTCACGCAGTGCTTGGGCATCACCC TTGCATGAAGTTTATGCTCACGCGGTGCTTGGGCATCACCC < 41bp 0.575465090424069 0.795934583099298 0.039723545 0.33750913 prediction 0.440938985350457 Functional Gain - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141420765 chr7:141420768 synonymous SNV . 0 24 hm5C_associated_SNPs_119454 0 0 0 0 2 WEE2 chr7:141420735 3'AG 141420735 Downstream 34bp
chr7 141420768 141420768 1 + A G rs6967301 141420765 + 141420745 141420785 41 TTGCATGAAGTTTATGCTCACGCAGTGCTTGGGCATCACCC TTGCATGAAGTTTATGCTCACGCGGTGCTTGGGCATCACCC < 41bp 0.575465090424069 0.795934583099298 0.039723545 0.33750913 prediction 0.440938985350457 Functional Gain - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141420765 chr7:141420768 synonymous SNV . 0 24 hm5C_associated_SNPs_119454 0 0 0 0 2 WEE2 chr7:141420856 5'GT 141420856 Upstream 89bp
chr19 4234679 4234679 1 + C A LUAD 4234678 + 4234658 4234698 41 CGTCAGTCAAGCCCGACCCTCCAGAAGGCGTGCGCCTAAGC CGTCAGTCAAGCCCGACCCTCAAGAAGGCGTGCGCCTAAGC < 41bp 0.616991803448088 0.837459359398891 0.6870465 0.7347542 prediction 0.440935111901606 Functional Gain - EBI3 ENSG00000105246 CDS Human protein_coding chr19:4234678 chr19:4234679 nonsynonymous SNV 0.552 4 22 hm5C_associated_SNPs_119455 0 0 0 0 1 EBI3 chr19:4234664 3'AG 4234664 Downstream 16bp
chr14 90455406 90455406 1 + C T UCEC 90455405 + 90455385 90455425 41 TGGGGAAGGAAAGCAAGACTCCAGGAAAAAGCTCTGTTCCT TGGGGAAGGAAAGCAAGACTCTAGGAAAAAGCTCTGTTCCT < 41bp 0.529520712144114 0.749977108242481 0.4437402 0.32969856 prediction 0.440912792196734 Functional Gain - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90455405 chr14:90455406 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_119464 0 0 1 0 1 TDP1 chr14:90455434 5'GT 90455434 Upstream 29bp
chr6 32822041 32822041 1 + C T CESC 32822040 + 32822020 32822060 41 GAGCACCAACCGGGGACTTACCCCGGGCGGGAGAAGTCCAC GAGCACCAACCGGGGACTTACTCCGGGCGGGAGAAGTCCAC < 41bp 0.513831580460054 0.73428061095179 0.88771147 0.90189654 prediction 0.440898060983473 Functional Gain - PSMB9 ENSG00000240065 CDS Human protein_coding chr6:32822040 chr6:32822041 nonsynonymous SNV 0.015 0 22 hm5C_associated_SNPs_119468 0 0 1 0 1 PSMB9 chr6:32822066 5'GT 32822066 Upstream 26bp
chr19 42260803 42260803 1 + T C rs528072396 42260800 + 42260780 42260820 41 ACCCAGAATGACACAGGATTCTATACCCTACAAGTCATAAA ACCCAGAATGACACAGGATTCTACACCCTACAAGTCATAAA < 41bp 0.502771843159977 0.723220818582371 0.07093808 0.10221094 prediction 0.440897950844788 Functional Gain - CEACAM6 ENSG00000086548 CDS Human protein_coding chr19:42260800 chr19:42260803 synonymous SNV . 0 24 hm5C_associated_SNPs_119469 0 0 0 0 1 CEACAM6 chr19:42260867 5'GT 42260867 Upstream 65bp
chr12 56415292 56415292 1 + C T STAD 56415291 + 56415271 56415311 41 CGCAGACATGCATACACCACCCGCACTCCCTCGCCGTTTCC CGCAGACATGCATACACCACCTGCACTCCCTCGCCGTTTCC < 41bp 0.482897820015398 0.720443212391972 0.038840592 0.15712902 prediction 0.440886424783943 Functional Gain - IKZF4 ENSG00000123411 CDS Human protein_coding chr12:56415291 chr12:56415292 synonymous SNV . 0 22 hm5C_associated_SNPs_119473 0 0 0 0 2 IKZF4 chr12:56415215 3'AG 56415215 Downstream 78bp
chr12 56415292 56415292 1 + C T STAD 56415291 + 56415271 56415311 41 CGCAGACATGCATACACCACCCGCACTCCCTCGCCGTTTCC CGCAGACATGCATACACCACCTGCACTCCCTCGCCGTTTCC < 41bp 0.482897820015398 0.720443212391972 0.038840592 0.15712902 prediction 0.440886424783943 Functional Gain - IKZF4 ENSG00000123411 CDS Human protein_coding chr12:56415291 chr12:56415292 synonymous SNV . 0 22 hm5C_associated_SNPs_119473 0 0 0 0 2 IKZF4 chr12:56415364 5'GT 56415364 Upstream 73bp
chrX 43603700 43603700 1 + C T SKCM 43603699 + 43603679 43603719 41 GCTGAAGATCATTGGATTTTCCACATCAGTAACTGCCCTGG GCTGAAGATCATTGGATTTTCTACATCAGTAACTGCCCTGG < 41bp 0.576099571713799 0.796541541138481 0.2719606 0.92300487 prediction 0.440883938849363 Functional Gain - MAOA ENSG00000189221 CDS Human protein_coding chrX:43603699 chrX:43603700 synonymous SNV . 0 22 hm5C_associated_SNPs_119474 0 0 0 0 1 MAOA chrX:43603614 3'AG 43603614 Downstream 87bp
chr15 42114291 42114291 1 + C T UCEC 42114290 + 42114270 42114310 41 GCAGCAGCTGCCTTTCCAGCCCGGAGCACCCCACTGAAGGT GCAGCAGCTGCCTTTCCAGCCTGGAGCACCCCACTGAAGGT < 41bp 0.581505416641823 0.80194105788646 0.30358016 0.059999824 prediction 0.440871282489275 Functional Gain - MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42114290 chr15:42114291 nonsynonymous SNV 0.982 4 22 hm5C_associated_SNPs_119477 0 0 0 0 1 MAPKBP1 chr15:42114308 5'GT 42114308 Upstream 18bp
chr11 64875061 64875061 1 + C T UCEC 64875060 + 64875040 64875080 41 CCTGCCCTCCTAGACACCATCCGGAAGATGAAGAACGATTT CCTGCCCTCCTAGACACCATCTGGAAGATGAAGAACGATTT < 41bp 0.584465109169219 0.804898058155039 0.88217705 0.8619437 prediction 0.44086589797164 Functional Gain - VPS51 ENSG00000149823 CDS Human protein_coding chr11:64875060 chr11:64875061 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_119480 0 0 1 0 1 VPS51 chr11:64875053 3'AG 64875053 Downstream 9bp
chr19 33465048 33465048 1 + T C UCEC 33465045 + 33465025 33465065 41 CCCAGCCCTACAGAAGTTTACTGTGCTGGACCTTGGAATGG CCCAGCCCTACAGAAGTTTACTGCGCTGGACCTTGGAATGG < 41bp 0.506187351487837 0.726616104590921 0.06240478 0.054398 prediction 0.440857506206167 Functional Gain - FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33465045 chr19:33465048 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_119484 0 0 1 0 2 FAAP24 chr19:33464966 3'AG 33464966 Downstream 83bp
chr19 33465048 33465048 1 + T C UCEC 33465045 + 33465025 33465065 41 CCCAGCCCTACAGAAGTTTACTGTGCTGGACCTTGGAATGG CCCAGCCCTACAGAAGTTTACTGCGCTGGACCTTGGAATGG < 41bp 0.506187351487837 0.726616104590921 0.06240478 0.054398 prediction 0.440857506206167 Functional Gain - FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33465045 chr19:33465048 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_119484 0 0 1 0 2 FAAP24 chr19:33465118 5'GT 33465118 Upstream 71bp
chr17 51901221 51901221 1 - A G LUAD 51901223 - 51901203 51901243 41 GGTGAACTGGTACACCAACTCGTTGGAGGCTTTGTCATCGA GGTGAACTGGTACACCAACTCGCTGGAGGCTTTGTCATCGA < 41bp 0.467214321044964 0.720428540745251 0.24087799 0.2280826 prediction 0.440857081490501 Functional Gain - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51901223 chr17:51901221 nonsynonymous SNV 0.834 4 23 hm5C_associated_SNPs_119485 0 0 0 0 1 KIF2B chr17:51901196 5'GT 51901196 Upstream 26bp
chr19 55481465 55481465 1 + T A LUAD 55481461 + 55481441 55481481 41 CAGGATGAGTTGAGCAAGTTCAAGTATCTGATCACGACCTT CAGGATGAGTTGAGCAAGTTCAAGAATCTGATCACGACCTT < 41bp 0.662028192589063 0.882455375461119 0.25782806 0.2306898 prediction 0.440854365744111 Functional Gain - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55481461 chr19:55481465 nonsynonymous SNV 0.060 0 25 hm5C_associated_SNPs_119488 0 0 0 0 2 NLRP2 chr19:55481367 3'AG 55481367 Downstream 99bp
chr19 55481465 55481465 1 + T A LUAD 55481461 + 55481441 55481481 41 CAGGATGAGTTGAGCAAGTTCAAGTATCTGATCACGACCTT CAGGATGAGTTGAGCAAGTTCAAGAATCTGATCACGACCTT < 41bp 0.662028192589063 0.882455375461119 0.25782806 0.2306898 prediction 0.440854365744111 Functional Gain - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55481461 chr19:55481465 nonsynonymous SNV 0.060 0 25 hm5C_associated_SNPs_119488 0 0 0 0 2 NLRP2 chr19:55481521 5'GT 55481521 Upstream 57bp
chr10 103908243 103908243 1 + C T THCA 103908242 + 103908222 103908262 41 TTCTCGAAGCCGCTCACGATCCCCATCCCCCCGCCGGAGAA TTCTCGAAGCCGCTCACGATCTCCATCCCCCCGCCGGAGAA < 41bp 0.637296804548404 0.857719569413218 0.019322932 0.9465549 prediction 0.440845529729629 Functional Gain - PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103908242 chr10:103908243 synonymous SNV . 0 22 hm5C_associated_SNPs_119493 0 0 1 0 1 PPRC1 chr10:103908278 5'GT 103908278 Upstream 36bp
chr2 155555962 155555962 1 + C T STAD 155555961 + 155555941 155555981 41 GCGCAACAGCCACATGGTCTCCGCGCAGATTCGCTGCAAGC GCGCAACAGCCACATGGTCTCTGCGCAGATTCGCTGCAAGC < 41bp 0.542300050100953 0.762720371354825 0.24026924 0.097335845 prediction 0.440840642507744 Functional Gain - KCNJ3 ENSG00000162989 CDS Human protein_coding chr2:155555961 chr2:155555962 synonymous SNV . 0 22 hm5C_associated_SNPs_119496 0 0 0 0 1 KCNJ3 chr2:155555989 5'GT 155555989 Upstream 28bp
chr16 11016097 11016097 1 + C T COAD 11016096 + 11016076 11016116 41 CTTCCGGACATGGTGTCCCTCCGGGTGATGGAGTGAGTGTG CTTCCGGACATGGTGTCCCTCTGGGTGATGGAGTGAGTGTG < 41bp 0.577541962271608 0.797955024957575 0.8855746 0.6636869 prediction 0.440826125371933 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:11016096 chr16:11016097 nonsynonymous SNV 0.897 3 22 hm5C_associated_SNPs_119499 0 0 0 0 2 CIITA chr16:11016024 3'AG 11016024 Downstream 74bp
chr16 11016097 11016097 1 + C T COAD 11016096 + 11016076 11016116 41 CTTCCGGACATGGTGTCCCTCCGGGTGATGGAGTGAGTGTG CTTCCGGACATGGTGTCCCTCTGGGTGATGGAGTGAGTGTG < 41bp 0.577541962271608 0.797955024957575 0.8855746 0.6636869 prediction 0.440826125371933 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:11016096 chr16:11016097 nonsynonymous SNV 0.897 3 22 hm5C_associated_SNPs_119499 0 0 0 0 2 CIITA chr16:11016107 5'GT 11016107 Upstream 11bp
chr2 149528411 149528411 1 + T A SKCM 149528407 + 149528387 149528427 41 ATGTGAAAATTCAGAATTGGCAGATTTGGATAAGTTGAGGT ATGTGAAAATTCAGAATTGGCAGAATTGGATAAGTTGAGGT < 41bp 0.402504772548126 0.720410772053063 0.36321938 0.23883429 prediction 0.440821544106126 Functional Gain - EPC2 ENSG00000135999 CDS Human protein_coding chr2:149528407 chr2:149528411 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_119502 0 0 1 0 2 EPC2 chr2:149528361 3'AG 149528361 Downstream 51bp
chr2 149528411 149528411 1 + T A SKCM 149528407 + 149528387 149528427 41 ATGTGAAAATTCAGAATTGGCAGATTTGGATAAGTTGAGGT ATGTGAAAATTCAGAATTGGCAGAATTGGATAAGTTGAGGT < 41bp 0.402504772548126 0.720410772053063 0.36321938 0.23883429 prediction 0.440821544106126 Functional Gain - EPC2 ENSG00000135999 CDS Human protein_coding chr2:149528407 chr2:149528411 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_119502 0 0 1 0 2 EPC2 chr2:149528506 5'GT 149528506 Upstream 96bp
chr20 21695183 21695183 1 + C T SKCM 21695182 + 21695162 21695202 41 AGCTTACACGGACTGCCCATCCCGGCCTCGACCTCCTAGGG AGCTTACACGGACTGCCCATCTCGGCCTCGACCTCCTAGGG < 41bp 0.568082284844127 0.788491918277112 0.3522305 0.19234562 prediction 0.44081926686597 Functional Gain - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21695182 chr20:21695183 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_119504 0 0 0 0 2 PAX1 chr20:21695109 3'AG 21695109 Downstream 75bp
chr20 21695183 21695183 1 + C T SKCM 21695182 + 21695162 21695202 41 AGCTTACACGGACTGCCCATCCCGGCCTCGACCTCCTAGGG AGCTTACACGGACTGCCCATCTCGGCCTCGACCTCCTAGGG < 41bp 0.568082284844127 0.788491918277112 0.3522305 0.19234562 prediction 0.44081926686597 Functional Gain - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21695182 chr20:21695183 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_119504 0 0 0 0 2 PAX1 chr20:21695119 3'AG 21695119 Downstream 65bp
chr19 50002862 50002862 1 + C T OV 50002861 + 50002841 50002881 41 GCTCAAGGTCACCAAGGCTGCCGGCACCAAGAAGCAGTTCC GCTCAAGGTCACCAAGGCTGCTGGCACCAAGAAGCAGTTCC < 41bp 0.527285099248388 0.747694343236791 0.17905828 0.09442964 prediction 0.440818487976805 Functional Gain - RPS11 ENSG00000142534 CDS Human protein_coding chr19:50002861 chr19:50002862 synonymous SNV . 0 22 hm5C_associated_SNPs_119505 0 0 1 0 1 RPS11 chr19:50002769 3'AG 50002769 Downstream 94bp
chr8 86358511 86358511 1 + C T UCEC 86358510 + 86358490 86358530 41 GCTGCTGAAGGAGCCCATGACCGTGAGCTCTGACCAGGTGA GCTGCTGAAGGAGCCCATGACTGTGAGCTCTGACCAGGTGA < 41bp 0.563853035158034 0.784254748341952 0.3024745 0.19295731 prediction 0.440803426367836 Functional Gain - CA3 ENSG00000164879 CDS Human protein_coding chr8:86358510 chr8:86358511 synonymous SNV . 0 22 hm5C_associated_SNPs_119508 0 0 0 0 1 CA3 chr8:86358526 5'GT 86358526 Upstream 16bp
chr3 32745388 32745388 1 + A G BLCA 32745385 + 32745365 32745405 41 GGAGCAGAGAAACATGAAGGCACAGGTCAGTCCTCTGGGAT GGAGCAGAGAAACATGAAGGCACGGGTCAGTCCTCTGGGAT < 41bp 0.545281861451856 0.765677993784902 0.4103789 0.87893665 prediction 0.440792264666091 Functional Gain - CNOT10 ENSG00000182973 CDS Human protein_coding chr3:32745385 chr3:32745388 synonymous SNV . 0 24 hm5C_associated_SNPs_119510 0 0 1 1 2 CNOT10 chr3:32745360 3'AG 32745360 Downstream 29bp
chr3 32745388 32745388 1 + A G BLCA 32745385 + 32745365 32745405 41 GGAGCAGAGAAACATGAAGGCACAGGTCAGTCCTCTGGGAT GGAGCAGAGAAACATGAAGGCACGGGTCAGTCCTCTGGGAT < 41bp 0.545281861451856 0.765677993784902 0.4103789 0.87893665 prediction 0.440792264666091 Functional Gain - CNOT10 ENSG00000182973 CDS Human protein_coding chr3:32745385 chr3:32745388 synonymous SNV . 0 24 hm5C_associated_SNPs_119510 0 0 1 1 2 CNOT10 chr3:32745454 5'GT 32745454 Upstream 67bp
chr20 18295755 18295755 1 + C T STAD 18295754 + 18295734 18295774 41 ACCTCGATCCTTTCTGCCCTCCGGGTTTCTCCAGTCAGAAA ACCTCGATCCTTTCTGCCCTCTGGGTTTCTCCAGTCAGAAA < 41bp 0.521976432530377 0.742366364829873 0.91755164 0.22031042 prediction 0.440779864598992 Functional Gain - ZNF133 ENSG00000125846 CDS Human protein_coding chr20:18295754 chr20:18295755 nonsynonymous SNV 0.078 0 22 hm5C_associated_SNPs_119511 0 0 1 0 2 ZNF133 chr20:18295713 3'AG 18295713 Downstream 43bp
chr20 18295755 18295755 1 + C T STAD 18295754 + 18295734 18295774 41 ACCTCGATCCTTTCTGCCCTCCGGGTTTCTCCAGTCAGAAA ACCTCGATCCTTTCTGCCCTCTGGGTTTCTCCAGTCAGAAA < 41bp 0.521976432530377 0.742366364829873 0.91755164 0.22031042 prediction 0.440779864598992 Functional Gain - ZNF133 ENSG00000125846 CDS Human protein_coding chr20:18295754 chr20:18295755 nonsynonymous SNV 0.078 0 22 hm5C_associated_SNPs_119511 0 0 1 0 2 ZNF133 chr20:18295716 3'AG 18295716 Downstream 40bp
chr1 65113564 65113564 1 + C T COAD 65113563 + 65113543 65113583 41 GGGAAGTACGGTGTGCCAGACCGGATGGCCTTGCCTGTGAT GGGAAGTACGGTGTGCCAGACTGGATGGCCTTGCCTGTGAT < 41bp 0.605987246875788 0.826370972615464 0.41024393 0.5418141 prediction 0.440767451479351 Functional Gain - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65113563 chr1:65113564 nonsynonymous SNV 0.800 3 22 hm5C_associated_SNPs_119516 0 0 0 0 1 CACHD1 chr1:65113484 3'AG 65113484 Downstream 81bp
chr3 119336910 119336910 1 + T C SKCM 119336907 + 119336887 119336927 41 ATCACATGAGGGCTGTGCACCTCTACATCAGCGCCCTGGAG ATCACATGAGGGCTGTGCACCTCCACATCAGCGCCCTGGAG < 41bp 0.523951317491711 0.744333300304151 0.9298151 0.9358156 prediction 0.440763965624881 Functional Gain - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119336907 chr3:119336910 nonsynonymous SNV 0.975 5 24 hm5C_associated_SNPs_119517 0 0 0 0 1 PLA1A chr3:119336866 3'AG 119336866 Downstream 45bp
chr1 46650334 46650334 1 + C A GBM 46650333 + 46650313 46650353 41 TGTGGTCGCCTTGGTGTACACCACAATGGTGAGACACTGGG TGTGGTCGCCTTGGTGTACACAACAATGGTGAGACACTGGG < 41bp 0.599056533437945 0.819417642869341 0.091100425 0.17114499 prediction 0.440722218862793 Functional Gain - TSPAN1 ENSG00000117472 CDS Human protein_coding chr1:46650333 chr1:46650334 synonymous SNV . 0 22 hm5C_associated_SNPs_119521 0 0 0 0 2 TSPAN1 chr1:46650266 3'AG 46650266 Downstream 69bp
chr1 46650334 46650334 1 + C A GBM 46650333 + 46650313 46650353 41 TGTGGTCGCCTTGGTGTACACCACAATGGTGAGACACTGGG TGTGGTCGCCTTGGTGTACACAACAATGGTGAGACACTGGG < 41bp 0.599056533437945 0.819417642869341 0.091100425 0.17114499 prediction 0.440722218862793 Functional Gain - TSPAN1 ENSG00000117472 CDS Human protein_coding chr1:46650333 chr1:46650334 synonymous SNV . 0 22 hm5C_associated_SNPs_119521 0 0 0 0 2 TSPAN1 chr1:46650340 5'GT 46650340 Upstream 7bp
chr5 80597431 80597431 1 + C G rs577472775 80597430 + 80597410 80597450 41 TGTGCTTCCGGTCTCCAATACCGCAGGAGGGCGGTCTTCCC TGTGCTTCCGGTCTCCAATACGGCAGGAGGGCGGTCTTCCC < 41bp 0.655036309108583 0.875397089062897 0.9434346 0.93827 prediction 0.440721559908629 Functional Gain - RNU5D-1;RNU5E-1 ENSG00000131732 UTR5 Human protein_coding chr5:80597430 chr5:80597431 . . 0 22 hm5C_associated_SNPs_119522 0 0 0 0 2 RNU5D-1;RNU5E-1 chr5:80597489 5'GT 80597489 Upstream 59bp
chr5 80597431 80597431 1 + C G rs577472775 80597430 + 80597410 80597450 41 TGTGCTTCCGGTCTCCAATACCGCAGGAGGGCGGTCTTCCC TGTGCTTCCGGTCTCCAATACGGCAGGAGGGCGGTCTTCCC < 41bp 0.655036309108583 0.875397089062897 0.9434346 0.93827 prediction 0.440721559908629 Functional Gain - RNU5D-1;RNU5E-1 ENSG00000131732 UTR5 Human protein_coding chr5:80597430 chr5:80597431 . . 0 22 hm5C_associated_SNPs_119522 0 0 0 0 2 RNU5D-1;RNU5E-1 chr5:80597517 5'GT 80597517 Upstream 87bp
chr10 95347040 95347040 1 + C T SKCM 95347039 + 95347019 95347059 41 TACTCGGAGAGCCACCAGATCCGCGTGTCCCAGCAGGACTT TACTCGGAGAGCCACCAGATCTGCGTGTCCCAGCAGGACTT < 41bp 0.568672730090226 0.789032502073087 0.3563553 0.10932946 prediction 0.440719543965721 Functional Gain - FFAR4 ENSG00000186188 CDS Human protein_coding chr10:95347039 chr10:95347040 nonsynonymous SNV 0.976 3 22 hm5C_associated_SNPs_119523 0 0 0 0 1 FFAR4 chr10:95346977 3'AG 95346977 Downstream 64bp
chr6 3078132 3078132 1 + T C UCEC 3078130 + 3078110 3078150 41 TACTCCCTGGTGATGGAGTACATGGAGAAGGGCAACCTGAT TACTCCCTGGTGATGGAGTACACGGAGAAGGGCAACCTGAT < 41bp 0.502856469894504 0.723211200455736 0.4562891 0.35340658 prediction 0.440709461122464 Functional Gain - RIPK1 ENSG00000137275 CDS Human protein_coding chr6:3078130 chr6:3078132 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_119525 0 0 1 0 1 RIPK1 chr6:3078169 5'GT 3078169 Upstream 38bp
chr7 100867054 100867054 1 + C T SKCM 100867053 + 100867033 100867073 41 CTGTCTGTGGCTTCCCATCCCCCTACACCTGTGTCAGCTGC CTGTCTGTGGCTTCCCATCCCTCTACACCTGTGTCAGCTGC < 41bp 0.448405472026461 0.720341675990125 0.010183662 0.712564 prediction 0.440683351980251 Functional Gain - ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100867053 chr7:100867054 nonsynonymous SNV 0.987 1 22 hm5C_associated_SNPs_119529 0 0 1 0 1 ZNHIT1 chr7:100867123 5'GT 100867123 Upstream 70bp
chr17 42152707 42152707 1 + C T COAD 42152706 + 42152686 42152726 41 CTGGGCTGGCTGATGACTCCCCGAGTGCCTATGGAGCGGGA CTGGGCTGGCTGATGACTCCCTGAGTGCCTATGGAGCGGGA < 41bp 0.472958869973365 0.720339839704425 0.16190991 0.055992007 prediction 0.44067967940885 Functional Gain - G6PC3 ENSG00000141349 CDS Human protein_coding chr17:42152706 chr17:42152707 stopgain 0.986 0 22 hm5C_associated_SNPs_119530 0 0 1 0 1 G6PC3 chr17:42152678 3'AG 42152678 Downstream 30bp
chr5 150052039 150052039 1 + C A LUSC 150052035 + 150052015 150052055 41 GATGGCCGAAGTCACACCCCCAGCCCCAACGACTACCGAAA GATGGCCGAAGTCACACCCCCAGCACCAACGACTACCGAAA < 41bp 0.293844298348248 0.720336549679809 0.20231977 0.13621244 prediction 0.440673099359617 Functional Gain - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150052035 chr5:150052039 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_119535 0 0 0 0 1 MYOZ3 chr5:150052064 5'GT 150052064 Upstream 26bp
chr1 26597549 26597549 1 + C A SKCM 26597548 + 26597528 26597568 41 AGGAGACCAGTGGAGAAGGTCCAGAAGTGGAAATGGAGTCC AGGAGACCAGTGGAGAAGGTCAAGAAGTGGAAATGGAGTCC < 41bp 0.600708564190516 0.821043670026382 0.20308262 0.3282534 prediction 0.440670211671732 Functional Gain - CEP85 ENSG00000130695 CDS Human protein_coding chr1:26597548 chr1:26597549 nonsynonymous SNV 0.598 0 22 hm5C_associated_SNPs_119536 0 0 1 0 2 CEP85 chr1:26597505 3'AG 26597505 Downstream 45bp
chr1 26597549 26597549 1 + C A SKCM 26597548 + 26597528 26597568 41 AGGAGACCAGTGGAGAAGGTCCAGAAGTGGAAATGGAGTCC AGGAGACCAGTGGAGAAGGTCAAGAAGTGGAAATGGAGTCC < 41bp 0.600708564190516 0.821043670026382 0.20308262 0.3282534 prediction 0.440670211671732 Functional Gain - CEP85 ENSG00000130695 CDS Human protein_coding chr1:26597548 chr1:26597549 nonsynonymous SNV 0.598 0 22 hm5C_associated_SNPs_119536 0 0 1 0 2 CEP85 chr1:26597598 5'GT 26597598 Upstream 50bp
chr11 134239747 134239747 1 + T C COAD 134239745 + 134239725 134239765 41 GGCGATTACACGGCCAAGTACATGAAGCTTCGAGACTTCTT GGCGATTACACGGCCAAGTACACGAAGCTTCGAGACTTCTT < 41bp 0.444762524032619 0.720329758532397 0.18394864 0.5138578 prediction 0.440659517064794 Functional Gain - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134239745 chr11:134239747 nonsynonymous SNV 0.920 1 23 hm5C_associated_SNPs_119538 0 0 0 0 2 GLB1L2 chr11:134239699 3'AG 134239699 Downstream 49bp
chr11 134239747 134239747 1 + T C COAD 134239745 + 134239725 134239765 41 GGCGATTACACGGCCAAGTACATGAAGCTTCGAGACTTCTT GGCGATTACACGGCCAAGTACACGAAGCTTCGAGACTTCTT < 41bp 0.444762524032619 0.720329758532397 0.18394864 0.5138578 prediction 0.440659517064794 Functional Gain - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134239745 chr11:134239747 nonsynonymous SNV 0.920 1 23 hm5C_associated_SNPs_119538 0 0 0 0 2 GLB1L2 chr11:134239779 5'GT 134239779 Upstream 33bp
chr6 138726283 138726283 1 + C T rs148433984 138726282 + 138726262 138726302 41 TTTTCTCTGTTCCACTTTAGCCCGGAAGTTATGAGATCCGA TTTTCTCTGTTCCACTTTAGCTCGGAAGTTATGAGATCCGA < 41bp 0.579820575322541 0.800145695657639 0.030790925 0.027371526 prediction 0.440650240670195 Functional Gain - HEBP2 ENSG00000051620 CDS Human protein_coding chr6:138726282 chr6:138726283 nonsynonymous SNV 0.962 1 22 hm5C_associated_SNPs_119539 0 0 1 0 1 HEBP2 chr6:138726282 3'AG 138726282 Downstream 2bp
chr2 183593668 183593668 1 + C T LGG 183593667 + 183593647 183593687 41 GGTGATGATAGAATGCTTTGCCGAATGAAAGGAGTCAACAG GGTGATGATAGAATGCTTTGCTGAATGAAAGGAGTCAACAG < 41bp 0.559917458282377 0.78023610874947 0.07931107 0.051861644 prediction 0.440637300934185 Functional Gain - DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183593667 chr2:183593668 stopgain 1.000 1 22 hm5C_associated_SNPs_119540 0 0 1 0 2 DNAJC10 chr2:183593590 3'AG 183593590 Downstream 79bp
chr2 183593668 183593668 1 + C T LGG 183593667 + 183593647 183593687 41 GGTGATGATAGAATGCTTTGCCGAATGAAAGGAGTCAACAG GGTGATGATAGAATGCTTTGCTGAATGAAAGGAGTCAACAG < 41bp 0.559917458282377 0.78023610874947 0.07931107 0.051861644 prediction 0.440637300934185 Functional Gain - DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183593667 chr2:183593668 stopgain 1.000 1 22 hm5C_associated_SNPs_119540 0 0 1 0 2 DNAJC10 chr2:183593721 5'GT 183593721 Upstream 54bp
chr4 74719094 74719094 1 + C G OV 74719090 + 74719070 74719110 41 CAGCTGCAACATGAGCTCCGCAGCCAGGTCCCGCCTCACCC CAGCTGCAACATGAGCTCCGCAGCGAGGTCCCGCCTCACCC < 41bp 0.639953367840047 0.860266875006625 0.13057935 0.38958406 prediction 0.440627014333156 Functional Gain - PF4V1 ENSG00000109272 CDS Human protein_coding chr4:74719090 chr4:74719094 synonymous SNV . 0 25 hm5C_associated_SNPs_119541 0 0 0 0 1 PF4V1 chr4:74719179 5'GT 74719179 Upstream 86bp
chr1 8386059 8386059 1 + C T PRAD 8386058 + 8386038 8386078 41 CATGATGGACGTGTGCAGCCCCGCAGACCAGGACCGAGGCC CATGATGGACGTGTGCAGCCCTGCAGACCAGGACCGAGGCC < 41bp 0.593607373296398 0.813920044862055 0.34922543 0.26820925 prediction 0.440625343131315 Functional Gain - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8386058 chr1:8386059 synonymous SNV . 0 22 hm5C_associated_SNPs_119542 0 0 0 0 1 SLC45A1 chr1:8386102 5'GT 8386102 Upstream 44bp
chr17 46669721 46669721 1 - G T LUSC 46669722 - 46669702 46669742 41 CCACTTCAACCGCTACCTGACCCGGCGACGGCGCATCGAGA CCACTTCAACCGCTACCTGACACGGCGACGGCGCATCGAGA < 41bp 0.458207931278601 0.720305135339148 0.04449892 0.040171742 prediction 0.440610270678296 Functional Gain - HOXB5 ENSG00000120075 CDS Human protein_coding chr17:46669722 chr17:46669721 synonymous SNV . 0 22 hm5C_associated_SNPs_119544 0 0 0 0 1 HOXB5 chr17:46669818 3'AG 46669818 Downstream 98bp
chr6 7727783 7727783 1 + C G rs551211683 7727782 + 7727762 7727802 41 TCTGGCAGCGGCGGCGCGTCCCCACTGACCAGCGCGCAGGA TCTGGCAGCGGCGGCGCGTCCGCACTGACCAGCGCGCAGGA < 41bp 0.401305528928335 0.720298567659044 0.14076233 0.33006364 prediction 0.440597135318089 Functional Gain - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7727782 chr6:7727783 nonsynonymous SNV 0.628 0 22 hm5C_associated_SNPs_119545 0 0 1 0 1 BMP6 chr6:7727852 5'GT 7727852 Upstream 70bp
chrX 80532613 80532613 1 + C A LUAD 80532609 + 80532589 80532629 41 AAAATGTACCTGAAAATAGTCGACCAGCCACAGGTTACCCC AAAATGTACCTGAAAATAGTCGACAAGCCACAGGTTACCCC < 41bp 0.30640757142145 0.72029674869946 0.1294665 0.13771853 prediction 0.440593497398921 Functional Gain - SH3BGRL ENSG00000131171 CDS Human protein_coding chrX:80532609 chrX:80532613 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_119546 0 0 1 0 1 SH3BGRL chrX:80532668 5'GT 80532668 Upstream 56bp
chr2 233322526 233322526 1 + C A THCA 233322525 + 233322505 233322545 41 GGTGCCTGGTATGTGTGGAACCGCACTGAGCTCATGCAGGC GGTGCCTGGTATGTGTGGAACAGCACTGAGCTCATGCAGGC < 41bp 0.59989138430754 0.8201849977596 0.40308306 0.4203912 prediction 0.440587226904121 Functional Gain - ALPI ENSG00000163295 CDS Human protein_coding chr2:233322525 chr2:233322526 nonsynonymous SNV 0.006 2 22 hm5C_associated_SNPs_119548 0 0 0 0 1 ALPI chr2:233322577 5'GT 233322577 Upstream 52bp
chr19 11132437 11132437 1 + C T CESC 11132436 + 11132416 11132456 41 ATGATTGTGGACGAAGGTCACCGCATGAAGAACCACCACTG ATGATTGTGGACGAAGGTCACTGCATGAAGAACCACCACTG < 41bp 0.583878288315934 0.804170805162274 0.81498325 0.7868633 prediction 0.440585033692682 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11132436 chr19:11132437 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_119550 2 0 1 0 1 SMARCA4 chr19:11132401 3'AG 11132401 Downstream 37bp
chr21 45110302 45110302 1 + C A UCEC 45110298 + 45110278 45110318 41 CCAAGAGCAGCACTGCCACCCACCCTCCAGGCCCTGCCGTC CCAAGAGCAGCACTGCCACCCACCATCCAGGCCCTGCCGTC < 41bp 0.291315281876882 0.720290319599349 0.0111943185 0.047523946 prediction 0.440580639198699 Functional Gain - RRP1B ENSG00000160208 CDS Human protein_coding chr21:45110298 chr21:45110302 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_119552 0 0 1 0 1 RRP1B chr21:45110321 5'GT 45110321 Upstream 20bp
chr10 15098918 15098918 1 + C T UCEC 15098917 + 15098897 15098937 41 CCATGTGCTGGCGTGAGCCACCGTAGGCGTGAGCCACCGTG CCATGTGCTGGCGTGAGCCACTGTAGGCGTGAGCCACCGTG < 41bp 0.556504536737566 0.776788060190238 0.5780516 0.50771236 prediction 0.440567046905343 Functional Gain - OLAH ENSG00000152463 CDS Human protein_coding chr10:15098917 chr10:15098918 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_119554 0 0 0 0 2 OLAH chr10:15098823 3'AG 15098823 Downstream 96bp
chr10 15098918 15098918 1 + C T UCEC 15098917 + 15098897 15098937 41 CCATGTGCTGGCGTGAGCCACCGTAGGCGTGAGCCACCGTG CCATGTGCTGGCGTGAGCCACTGTAGGCGTGAGCCACCGTG < 41bp 0.556504536737566 0.776788060190238 0.5780516 0.50771236 prediction 0.440567046905343 Functional Gain - OLAH ENSG00000152463 CDS Human protein_coding chr10:15098917 chr10:15098918 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_119554 0 0 0 0 2 OLAH chr10:15098981 5'GT 15098981 Upstream 64bp
chr1 33954220 33954220 1 + C T rs146912787 33954219 + 33954199 33954239 41 CCTTCCCAATCACCTAAATGCCGAGGTGGCACCACAGCCTT CCTTCCCAATCACCTAAATGCTGAGGTGGCACCACAGCCTT < 41bp 0.553326091617368 0.773606555180678 0.32356003 0.35553056 prediction 0.440560927126619 Functional Gain - ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33954219 chr1:33954220 synonymous SNV . 0 22 hm5C_associated_SNPs_119555 0 0 0 0 1 ZSCAN20 chr1:33954251 5'GT 33954251 Upstream 32bp
chr2 233394675 233394675 1 + C T COAD 233394674 + 233394654 233394694 41 GGGGAGTGGGAGATAGTCCACCGGCCGGCCAGGGTCAACGT GGGGAGTGGGAGATAGTCCACTGGCCGGCCAGGGTCAACGT < 41bp 0.479259475292158 0.720263900669211 0.45649844 0.29536885 prediction 0.440527801338422 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233394674 chr2:233394675 nonsynonymous SNV 0.831 3 22 hm5C_associated_SNPs_119560 0 0 0 0 1 CHRND chr2:233394649 3'AG 233394649 Downstream 27bp
chr6 111329254 111329254 1 + C A COAD 111329253 + 111329233 111329273 41 TTTTTTAGAACAGTAAATGTCCTGAGGGAACAAAACCCATG TTTTTTAGAACAGTAAATGTCATGAGGGAACAAAACCCATG < 41bp 0.477207386073197 0.720256823051425 0.2631898 0.37595057 prediction 0.440513646102849 Functional Gain - RPF2 ENSG00000197498 CDS Human protein_coding chr6:111329253 chr6:111329254 nonsynonymous SNV 0.963 3 22 hm5C_associated_SNPs_119565 0 0 1 0 2 RPF2 chr6:111329241 3'AG 111329241 Downstream 14bp
chr6 111329254 111329254 1 + C A COAD 111329253 + 111329233 111329273 41 TTTTTTAGAACAGTAAATGTCCTGAGGGAACAAAACCCATG TTTTTTAGAACAGTAAATGTCATGAGGGAACAAAACCCATG < 41bp 0.477207386073197 0.720256823051425 0.2631898 0.37595057 prediction 0.440513646102849 Functional Gain - RPF2 ENSG00000197498 CDS Human protein_coding chr6:111329253 chr6:111329254 nonsynonymous SNV 0.963 3 22 hm5C_associated_SNPs_119565 0 0 1 0 2 RPF2 chr6:111329340 5'GT 111329340 Upstream 87bp
chr13 21925320 21925320 1 + T G rs114540479 21925317 + 21925297 21925337 41 AGCCAGACAGCACATTCAAGCTGTATGTCCCGGGATGATTC AGCCAGACAGCACATTCAAGCTGGATGTCCCGGGATGATTC < 41bp 0.358135709798767 0.720253392466937 0.29533082 0.46171364 prediction 0.440506784933874 Functional Gain - MIPEPP3 ENSG00000224429;ENSG00000235076 intergenic Human other chr13:21925317 chr13:21925320 . . 0 24 hm5C_associated_SNPs_119566 0 0 0 0 2 MIPEPP3 chr13:21925287 3'AG 21925287 Downstream 34bp
chr13 21925320 21925320 1 + T G rs114540479 21925317 + 21925297 21925337 41 AGCCAGACAGCACATTCAAGCTGTATGTCCCGGGATGATTC AGCCAGACAGCACATTCAAGCTGGATGTCCCGGGATGATTC < 41bp 0.358135709798767 0.720253392466937 0.29533082 0.46171364 prediction 0.440506784933874 Functional Gain - MIPEPP3 ENSG00000224429;ENSG00000235076 intergenic Human other chr13:21925317 chr13:21925320 . . 0 24 hm5C_associated_SNPs_119566 0 0 0 0 2 MIPEPP3 chr13:21925418 5'GT 21925418 Upstream 99bp
chr10 5963432 5963432 1 + A G OV 5963429 + 5963409 5963449 41 AGGTGGCATTAGAGGTGACGCAAAGGGGCAAGTGGCCTTGT AGGTGGCATTAGAGGTGACGCAAGGGGGCAAGTGGCCTTGT < 41bp 0.585954875199431 0.806203519984999 0.3625191 0.9052267 prediction 0.440497289571135 Functional Gain - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963429 chr10:5963432 nonsynonymous SNV 0.821 1 24 hm5C_associated_SNPs_119567 0 0 1 0 1 FBXO18 chr10:5963411 3'AG 5963411 Downstream 22bp
chr7 31009513 31009513 1 + C A GBM 31009509 + 31009489 31009529 41 GAAACGGGATTGTACTATCACTGGCTGGTCTGAGCCCTTTC GAAACGGGATTGTACTATCACTGGATGGTCTGAGCCCTTTC < 41bp 0.714490547082876 0.934737438692727 0.102062196 0.22431141 prediction 0.440493783219702 Functional Gain - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31009509 chr7:31009513 synonymous SNV . 0 25 hm5C_associated_SNPs_119569 0 0 0 0 2 GHRHR chr7:31009482 3'AG 31009482 Downstream 32bp
chr7 31009513 31009513 1 + C A GBM 31009509 + 31009489 31009529 41 GAAACGGGATTGTACTATCACTGGCTGGTCTGAGCCCTTTC GAAACGGGATTGTACTATCACTGGATGGTCTGAGCCCTTTC < 41bp 0.714490547082876 0.934737438692727 0.102062196 0.22431141 prediction 0.440493783219702 Functional Gain - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31009509 chr7:31009513 synonymous SNV . 0 25 hm5C_associated_SNPs_119569 0 0 0 0 2 GHRHR chr7:31009579 5'GT 31009579 Upstream 67bp
chr2 173344436 173344436 1 + A G HNSC 173344433 + 173344413 173344453 41 CTAACAGAATTGACCTCCGCCAGAAAACAGCGTGTGGGGCG CTAACAGAATTGACCTCCGCCAGGAAACAGCGTGTGGGGCG < 41bp 0.547670040927266 0.767915154374712 0.23772112 0.51907855 prediction 0.440490226894891 Functional Gain - ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173344433 chr2:173344436 nonsynonymous SNV 0.797 2 24 hm5C_associated_SNPs_119570 0 0 0 0 2 ITGA6 chr2:173344369 3'AG 173344369 Downstream 68bp
chr2 173344436 173344436 1 + A G HNSC 173344433 + 173344413 173344453 41 CTAACAGAATTGACCTCCGCCAGAAAACAGCGTGTGGGGCG CTAACAGAATTGACCTCCGCCAGGAAACAGCGTGTGGGGCG < 41bp 0.547670040927266 0.767915154374712 0.23772112 0.51907855 prediction 0.440490226894891 Functional Gain - ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173344433 chr2:173344436 nonsynonymous SNV 0.797 2 24 hm5C_associated_SNPs_119570 0 0 0 0 2 ITGA6 chr2:173344467 5'GT 173344467 Upstream 32bp
chr2 231742797 231742797 1 + A G UCEC 231742794 + 231742774 231742814 41 ACACCTTCGTGGTGGAGACGCTCATCTGCGGGGTGGTGTGA ACACCTTCGTGGTGGAGACGCTCGTCTGCGGGGTGGTGTGA < 41bp 0.569243044955576 0.789480204042327 0.28419113 0.23860312 prediction 0.440474318173501 Functional Gain - ITM2C ENSG00000135916 CDS Human protein_coding chr2:231742794 chr2:231742797 nonsynonymous SNV 0.928 3 24 hm5C_associated_SNPs_119572 0 0 1 0 1 ITM2C chr2:231742723 3'AG 231742723 Downstream 75bp
chr12 53819659 53819659 1 + C T STAD 53819658 + 53819638 53819678 41 GCCAGCCGGGGGGGTCCTGGCCGCCTGCTCTCTGGGCCCCT GCCAGCCGGGGGGGTCCTGGCTGCCTGCTCTCTGGGCCCCT < 41bp 0.475181567827176 0.720236708989255 0.06447759 0.09287307 prediction 0.44047341797851 Functional Gain - AMHR2 ENSG00000135409 CDS Human protein_coding chr12:53819658 chr12:53819659 nonsynonymous SNV 0.016 2 22 hm5C_associated_SNPs_119573 0 0 0 0 1 AMHR2 chr12:53819703 5'GT 53819703 Upstream 45bp
chr17 7909963 7909963 1 + C T SKCM 7909962 + 7909942 7909982 41 GCCGGTACCCGGATGCACTTCCCGCGTGGGGGATCAGCACC GCCGGTACCCGGATGCACTTCTCGCGTGGGGGATCAGCACC < 41bp 0.461568104936016 0.720236264697757 0.09796053 0.14186358 prediction 0.440472529395514 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7909962 chr17:7909963 nonsynonymous SNV 0.196 4 22 hm5C_associated_SNPs_119574 0 0 0 0 1 GUCY2D chr17:7910032 5'GT 7910032 Upstream 70bp
chr2 101086967 101086967 1 + C T SKCM 101086966 + 101086946 101086986 41 TCACAATGAAACATCTTCGTCCCCAGTTCCCTCTCATCTTG TCACAATGAAACATCTTCGTCTCCAGTTCCCTCTCATCTTG < 41bp 0.551770253606399 0.772004551275253 0.024740487 0.92822945 prediction 0.440468595337707 Functional Gain - NMS ENSG00000204640 CDS Human protein_coding chr2:101086966 chr2:101086967 nonsynonymous SNV 0.006 1 22 hm5C_associated_SNPs_119576 0 0 0 0 1 NMS chr2:101087026 5'GT 101087026 Upstream 60bp
chr19 50881418 50881418 1 + C T SKCM 50881417 + 50881397 50881437 41 CCACCCCAGTCATCCCAGATCCCGAAGAGGAACCAGAGCGC CCACCCCAGTCATCCCAGATCTCGAAGAGGAACCAGAGCGC < 41bp 0.590680933484776 0.810907392267103 0.26552823 0.40167475 prediction 0.440452917564653 Functional Gain - NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50881417 chr19:50881418 nonsynonymous SNV 0.004 2 22 hm5C_associated_SNPs_119577 0 0 1 0 1 NR1H2 chr19:50881406 3'AG 50881406 Downstream 13bp
chr19 51981798 51981798 1 + C T UCEC 51981797 + 51981777 51981817 41 CTGAAGGCTGGGAGACGAGACCGGCAGCCTCTGTGCCAGGA CTGAAGGCTGGGAGACGAGACTGGCAGCCTCTGTGCCAGGA < 41bp 0.49646719137014 0.720223715769105 0.4250728 0.28056046 prediction 0.44044743153821 Functional Gain - CEACAM18 ENSG00000213822 CDS Human protein_coding chr19:51981797 chr19:51981798 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_119578 0 0 0 0 1 CEACAM18 chr19:51981730 3'AG 51981730 Downstream 69bp
chr15 59806519 59806519 1 + C A HNSC 59806518 + 59806498 59806538 41 ACAGTTGAGGAACTCAGTAACCAGATATTATCTGCACGGAG ACAGTTGAGGAACTCAGTAACAAGATATTATCTGCACGGAG < 41bp 0.469036337561076 0.720214196520868 0.51941466 0.8802302 prediction 0.440428393041737 Functional Gain - FAM81A ENSG00000157470 CDS Human protein_coding chr15:59806518 chr15:59806519 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_119580 0 0 0 0 1 FAM81A chr15:59806488 3'AG 59806488 Downstream 32bp
chr16 31382711 31382711 1 + C G LUAD 31382710 + 31382690 31382730 41 AGTTCATACCTGCCGAGATCCCCAGGTCTGCGTTTGAGTGT AGTTCATACCTGCCGAGATCCGCAGGTCTGCGTTTGAGTGT < 41bp 0.401055920926874 0.72021295130714 0.11962983 0.4114926 prediction 0.44042590261428 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31382710 chr16:31382711 nonsynonymous SNV 0.200 0 22 hm5C_associated_SNPs_119581 0 0 0 0 1 ITGAX chr16:31382655 3'AG 31382655 Downstream 57bp
chr19 7853716 7853716 1 + C G rs36056976 7853712 + 7853692 7853732 41 GCAGGCGCTGCTGCAGACCACGAGCGCGGAGCTTGGGGAGG GCAGGCGCTGCTGCAGACCACGAGGGCGGAGCTTGGGGAGG < 41bp 0.639109062862862 0.859321951518028 0.89926493 0.9125439 prediction 0.440425777310332 Functional Gain - CLEC4GP1 ENSG00000268297 ncRNA_exonic Human unprocessed_pseudogene chr19:7853712 chr19:7853716 . . 0 25 hm5C_associated_SNPs_119582 0 0 0 0 3 CLEC4GP1 chr19:7853682 3'AG 7853682 Downstream 35bp
chr19 7853716 7853716 1 + C G rs36056976 7853712 + 7853692 7853732 41 GCAGGCGCTGCTGCAGACCACGAGCGCGGAGCTTGGGGAGG GCAGGCGCTGCTGCAGACCACGAGGGCGGAGCTTGGGGAGG < 41bp 0.639109062862862 0.859321951518028 0.89926493 0.9125439 prediction 0.440425777310332 Functional Gain - CLEC4GP1 ENSG00000268297 ncRNA_exonic Human unprocessed_pseudogene chr19:7853712 chr19:7853716 . . 0 25 hm5C_associated_SNPs_119582 0 0 0 0 3 CLEC4GP1 chr19:7853777 5'GT 7853777 Upstream 62bp
chr19 7853716 7853716 1 + C G rs36056976 7853712 + 7853692 7853732 41 GCAGGCGCTGCTGCAGACCACGAGCGCGGAGCTTGGGGAGG GCAGGCGCTGCTGCAGACCACGAGGGCGGAGCTTGGGGAGG < 41bp 0.639109062862862 0.859321951518028 0.89926493 0.9125439 prediction 0.440425777310332 Functional Gain - CLEC4GP1 ENSG00000268297 ncRNA_exonic Human unprocessed_pseudogene chr19:7853712 chr19:7853716 . . 0 25 hm5C_associated_SNPs_119582 0 0 0 0 3 CLEC4GP1 chr19:7853786 5'GT 7853786 Upstream 71bp
chr19 10367465 10367465 1 + C A ESCA 10367464 + 10367444 10367484 41 CAGAAAGGCACTGGGCGGGCCCGGCATGGCAGCATCCGCTC CAGAAAGGCACTGGGCGGGCCAGGCATGGCAGCATCCGCTC < 41bp 0.597558620322362 0.817764131157218 0.3659066 0.84824735 prediction 0.440411021669711 Functional Gain - MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10367464 chr19:10367465 synonymous SNV . 0 22 hm5C_associated_SNPs_119584 0 0 1 0 2 MRPL4 chr19:10367384 3'AG 10367384 Downstream 82bp
chr19 10367465 10367465 1 + C A ESCA 10367464 + 10367444 10367484 41 CAGAAAGGCACTGGGCGGGCCCGGCATGGCAGCATCCGCTC CAGAAAGGCACTGGGCGGGCCAGGCATGGCAGCATCCGCTC < 41bp 0.597558620322362 0.817764131157218 0.3659066 0.84824735 prediction 0.440411021669711 Functional Gain - MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10367464 chr19:10367465 synonymous SNV . 0 22 hm5C_associated_SNPs_119584 0 0 1 0 2 MRPL4 chr19:10367501 5'GT 10367501 Upstream 37bp
chr3 183885797 183885797 1 + T C UCEC 183885795 + 183885775 183885815 41 GCTGGCTTCATCCGCCATACCGTCAACAAGATCACCTTCTC GCTGGCTTCATCCGCCATACCGCCAACAAGATCACCTTCTC < 41bp 0.640759911999861 0.860951818082185 0.038979083 0.22235173 prediction 0.440383812164647 Functional Gain - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183885795 chr3:183885797 nonsynonymous SNV 0.980 4 23 hm5C_associated_SNPs_119589 0 0 1 0 1 DVL3 chr3:183885853 5'GT 183885853 Upstream 57bp
chr1 161726587 161726587 1 + A G GBM 161726584 + 161726564 161726604 41 GCTTTATTTCAGCTTCTTTGCCCAAAATGCAGTGCCAAGTT GCTTTATTTCAGCTTCTTTGCCCGAAATGCAGTGCCAAGTT < 41bp 0.495757142973573 0.720187815663138 0.1739808 0.30145568 prediction 0.440375631326276 Functional Gain - DUSP12 ENSG00000081721 CDS Human protein_coding chr1:161726584 chr1:161726587 synonymous SNV . 0 24 hm5C_associated_SNPs_119592 0 0 1 0 1 DUSP12 chr1:161726576 3'AG 161726576 Downstream 12bp
chr11 124745939 124745939 1 + C G rs555231962 124745938 + 124745918 124745958 41 AATGCTCCGAGGACTGGTGCCCGGTCTCCTCTATCGAACCC AATGCTCCGAGGACTGGTGCCGGGTCTCCTCTATCGAACCC < 41bp 0.390197741983221 0.720175493730953 0.050796837 0.35194743 prediction 0.440350987461905 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124745938 chr11:124745939 synonymous SNV . 0 22 hm5C_associated_SNPs_119594 1 0 0 0 2 ROBO3 chr11:124745850 3'AG 124745850 Downstream 90bp
chr11 124745939 124745939 1 + C G rs555231962 124745938 + 124745918 124745958 41 AATGCTCCGAGGACTGGTGCCCGGTCTCCTCTATCGAACCC AATGCTCCGAGGACTGGTGCCGGGTCTCCTCTATCGAACCC < 41bp 0.390197741983221 0.720175493730953 0.050796837 0.35194743 prediction 0.440350987461905 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124745938 chr11:124745939 synonymous SNV . 0 22 hm5C_associated_SNPs_119594 1 0 0 0 2 ROBO3 chr11:124746021 5'GT 124746021 Upstream 83bp
chr17 46628425 46628425 1 + C A LUAD 46628421 + 46628401 46628441 41 GCTCGTGTACGCCGTCCGCGCCCGCTTGGACGCCGCCGACC GCTCGTGTACGCCGTCCGCGCCCGATTGGACGCCGCCGACC < 41bp 0.702515908102348 0.922688582852228 0.59816015 0.39858878 prediction 0.44034534949976 Functional Gain - HOXB3 ENSG00000120093 CDS Human protein_coding chr17:46628421 chr17:46628425 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_119596 0 0 1 0 1 HOXB3 chr17:46628386 3'AG 46628386 Downstream 40bp
chr11 75442247 75442247 1 + T G UCEC 75442245 + 75442225 75442265 41 AGGTGAACCAGCTGCACCAGCGTTATATCAAAGAGCTGTGC AGGTGAACCAGCTGCACCAGCGGTATATCAAAGAGCTGTGC < 41bp 0.369144001195284 0.720164667668969 0.40908468 0.8254082 prediction 0.440329335337938 Functional Gain - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75442245 chr11:75442247 synonymous SNV . 0 23 hm5C_associated_SNPs_119600 0 0 0 0 1 MOGAT2 chr11:75442177 3'AG 75442177 Downstream 71bp
chr3 32804301 32804301 1 + C G STAD 32804300 + 32804280 32804320 41 GATGCCATTACTCACTTGAACCCGGAGAATGTCACTGATGT GATGCCATTACTCACTTGAACGCGGAGAATGTCACTGATGT < 41bp 0.410817706527188 0.720148229912842 0.1266694 0.4370625 prediction 0.440296459825684 Functional Gain - CNOT10 ENSG00000182973 CDS Human protein_coding chr3:32804300 chr3:32804301 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_119604 0 0 1 1 2 CNOT10 chr3:32804225 3'AG 32804225 Downstream 77bp
chr3 32804301 32804301 1 + C G STAD 32804300 + 32804280 32804320 41 GATGCCATTACTCACTTGAACCCGGAGAATGTCACTGATGT GATGCCATTACTCACTTGAACGCGGAGAATGTCACTGATGT < 41bp 0.410817706527188 0.720148229912842 0.1266694 0.4370625 prediction 0.440296459825684 Functional Gain - CNOT10 ENSG00000182973 CDS Human protein_coding chr3:32804300 chr3:32804301 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_119604 0 0 1 1 2 CNOT10 chr3:32804355 5'GT 32804355 Upstream 55bp
chr2 241531519 241531519 1 + C T UCEC 241531518 + 241531498 241531538 41 ACTTGTCGGCAGCTGCTCCACCTGAAGGACCAGTGTCTGAT ACTTGTCGGCAGCTGCTCCACTTGAAGGACCAGTGTCTGAT < 41bp 0.467139274098266 0.720136361254896 0.054940164 0.08139402 prediction 0.440272722509792 Functional Gain - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241531518 chr2:241531519 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_119607 0 0 1 0 1 CAPN10 chr2:241531567 5'GT 241531567 Upstream 49bp
chr2 189860859 189860859 1 + C T UCEC 189860858 + 189860838 189860878 41 TTCTTTACTTCAGGGCATGCCCGGAAGTCCAGGAGGACCAG TTCTTTACTTCAGGGCATGCCTGGAAGTCCAGGAGGACCAG < 41bp 0.474828548512741 0.720136163633193 0.9018619 0.8802954 prediction 0.440272327266386 Functional Gain - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189860858 chr2:189860859 synonymous SNV . 0 22 hm5C_associated_SNPs_119608 2 0 0 0 2 COL3A1 chr2:189860851 3'AG 189860851 Downstream 9bp
chr2 189860859 189860859 1 + C T UCEC 189860858 + 189860838 189860878 41 TTCTTTACTTCAGGGCATGCCCGGAAGTCCAGGAGGACCAG TTCTTTACTTCAGGGCATGCCTGGAAGTCCAGGAGGACCAG < 41bp 0.474828548512741 0.720136163633193 0.9018619 0.8802954 prediction 0.440272327266386 Functional Gain - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189860858 chr2:189860859 synonymous SNV . 0 22 hm5C_associated_SNPs_119608 2 0 0 0 2 COL3A1 chr2:189860904 5'GT 189860904 Upstream 46bp
chr8 145662322 145662322 1 + A G BRCA 145662319 + 145662299 145662339 41 AATTTCTGCAGACCAGGAGACGTAAGCCCAGCTCCCGATGC AATTTCTGCAGACCAGGAGACGTGAGCCCAGCTCCCGATGC < 41bp 0.488172112524265 0.72012477815436 0.39594883 0.44889766 prediction 0.44024955630872 Functional Gain - TONSL-AS1 ENSG00000232600 ncRNA_exonic Human antisense chr8:145662319 chr8:145662322 . . 0 24 hm5C_associated_SNPs_119613 0 0 0 0 1 TONSL-AS1 chr8:145662378 5'GT 145662378 Upstream 57bp
chr1 61872334 61872334 1 + C G SKCM 61872330 + 61872310 61872350 41 CGATGGCCAGGCCTGTGCCTCTGCCGGTGCCAGACACAAAG CGATGGCCAGGCCTGTGCCTCTGCGGGTGCCAGACACAAAG < 41bp 0.439724451369967 0.720114804600564 0.22494763 0.20572081 prediction 0.440229609201128 Functional Gain - NFIA ENSG00000162599 CDS Human protein_coding chr1:61872330 chr1:61872334 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_119616 0 0 1 0 1 NFIA chr1:61872399 5'GT 61872399 Upstream 66bp
chr5 63890628 63890628 1 + C A LUSC 63890624 + 63890604 63890644 41 CCTAGAAGACTCCTCATCATCCCCCGTAGATAGTCAGCAAC CCTAGAAGACTCCTCATCATCCCCAGTAGATAGTCAGCAAC < 41bp 0.28730701675196 0.720106701019122 0.02969256 0.05051145 prediction 0.440213402038243 Functional Gain - RGS7BP ENSG00000186479 CDS Human protein_coding chr5:63890624 chr5:63890628 synonymous SNV . 0 25 hm5C_associated_SNPs_119617 0 0 0 0 2 RGS7BP chr5:63890537 3'AG 63890537 Downstream 92bp
chr5 63890628 63890628 1 + C A LUSC 63890624 + 63890604 63890644 41 CCTAGAAGACTCCTCATCATCCCCCGTAGATAGTCAGCAAC CCTAGAAGACTCCTCATCATCCCCAGTAGATAGTCAGCAAC < 41bp 0.28730701675196 0.720106701019122 0.02969256 0.05051145 prediction 0.440213402038243 Functional Gain - RGS7BP ENSG00000186479 CDS Human protein_coding chr5:63890624 chr5:63890628 synonymous SNV . 0 25 hm5C_associated_SNPs_119617 0 0 0 0 2 RGS7BP chr5:63890684 5'GT 63890684 Upstream 57bp
chr16 15661910 15661910 1 + C T SKCM 15661909 + 15661889 15661929 41 CTGCAGAACTTGGTCGCCATCCCAGGTAACCATTTGCAACT CTGCAGAACTTGGTCGCCATCTCAGGTAACCATTTGCAACT < 41bp 0.461590265044755 0.720103453315452 0.9067832 0.1465187 prediction 0.440206906630905 Functional Gain - C16orf45 ENSG00000166780 CDS Human protein_coding chr16:15661909 chr16:15661910 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_119618 0 0 0 0 2 C16orf45 chr16:15661840 3'AG 15661840 Downstream 71bp
chr16 15661910 15661910 1 + C T SKCM 15661909 + 15661889 15661929 41 CTGCAGAACTTGGTCGCCATCCCAGGTAACCATTTGCAACT CTGCAGAACTTGGTCGCCATCTCAGGTAACCATTTGCAACT < 41bp 0.461590265044755 0.720103453315452 0.9067832 0.1465187 prediction 0.440206906630905 Functional Gain - C16orf45 ENSG00000166780 CDS Human protein_coding chr16:15661909 chr16:15661910 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_119618 0 0 0 0 2 C16orf45 chr16:15661913 5'GT 15661913 Upstream 4bp
chr7 2749328 2749328 1 + C T SKCM 2749327 + 2749307 2749347 41 CTGGGGAACTGCCGCTGGCTCCGCTGCCTCATGCAGGGTGC CTGGGGAACTGCCGCTGGCTCTGCTGCCTCATGCAGGGTGC < 41bp 0.476273466227414 0.720100028143382 0.13124228 0.2221767 prediction 0.440200056286765 Functional Gain - AMZ1 ENSG00000174945 CDS Human protein_coding chr7:2749327 chr7:2749328 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_119619 0 0 0 0 1 AMZ1 chr7:2749274 3'AG 2749274 Downstream 55bp
chr7 73609074 73609074 1 + T C UCEC 73609072 + 73609052 73609092 41 TGTCCTGTTTCTTCCTCAGGCTTCAGGGATGACTTCTTAGG TGTCCTGTTTCTTCCTCAGGCTCCAGGGATGACTTCTTAGG < 41bp 0.412553946920048 0.720097930046911 0.16484374 0.6030505 prediction 0.440195860093821 Functional Gain - EIF4H ENSG00000106682 CDS Human protein_coding chr7:73609072 chr7:73609074 nonsynonymous SNV 0.967 0 23 hm5C_associated_SNPs_119620 0 0 1 0 1 EIF4H chr7:73609071 3'AG 73609071 Downstream 4bp
chr10 134886621 134886621 1 + C T rs563964217 134886620 + 134886600 134886640 41 GAAACGCTGGAGCTGGGTGCCCAGGGCTGCTGGGGGTCCAC GAAACGCTGGAGCTGGGTGCCTAGGGCTGCTGGGGGTCCAC < 41bp 0.509187846442429 0.7292845573092 0.5726428 0.446733 prediction 0.440193421733543 Functional Gain - LINC01168;ADGRA1-AS1 ENSG00000197177 CDS Human protein_coding chr10:134886620 chr10:134886621 stopgain 0.000 0 22 hm5C_associated_SNPs_119621 0 0 0 0 1 LINC01168;ADGRA1-AS1 chr10:134886701 5'GT 134886701 Upstream 81bp
chr18 56367823 56367823 1 + A G rs74847855 56367820 + 56367800 56367840 41 GCGACATCCCAGAGAGCTTCCAGAGTAAGTAACGAAAGAAG GCGACATCCCAGAGAGCTTCCAGGGTAAGTAACGAAAGAAG < 41bp 0.563690107611634 0.783767586806649 0.6529149 0.8774079 prediction 0.44015495839003 Functional Gain - MALT1 ENSG00000172175 CDS Human protein_coding chr18:56367820 chr18:56367823 nonsynonymous SNV 0.777 0 24 hm5C_associated_SNPs_119629 0 0 1 0 1 MALT1 chr18:56367823 3'AG 56367823 Downstream 1bp
chr9 116185644 116185644 1 + C T UCEC 116185643 + 116185623 116185663 41 GGGTCTCTCTGGAAATCAGTCCGCAGGAACACGAGTAGGAA GGGTCTCTCTGGAAATCAGTCTGCAGGAACACGAGTAGGAA < 41bp 0.601283174583929 0.821349670501188 0.37615392 0.796772 prediction 0.440132991834517 Functional Gain - C9orf43 ENSG00000157653 CDS Human protein_coding chr9:116185643 chr9:116185644 synonymous SNV . 0 22 hm5C_associated_SNPs_119631 0 0 0 0 1 C9orf43 chr9:116185606 3'AG 116185606 Downstream 39bp
chr1 2491372 2491372 1 + C T HNSC 2491371 + 2491351 2491391 41 GGGGACCACTGCGCCGCGTGCCGCGCTTACGCCACCTCCAG GGGGACCACTGCGCCGCGTGCTGCGCTTACGCCACCTCCAG < 41bp 0.529918512332471 0.749983578892976 0.23683494 0.21376702 prediction 0.44013013312101 Functional Gain - TNFRSF14 ENSG00000157873 CDS Human protein_coding chr1:2491371 chr1:2491372 nonsynonymous SNV 0.005 2 22 hm5C_associated_SNPs_119632 0 0 1 0 1 TNFRSF14 chr1:2491417 5'GT 2491417 Upstream 46bp
chrX 47045000 47045000 1 + C T BLCA 47044999 + 47044979 47045019 41 CCCAGCAAAGAGGCGCTCATCCGGCACCAGCAGCTCTCAGG CCCAGCAAAGAGGCGCTCATCTGGCACCAGCAGCTCTCAGG < 41bp 0.564340987854281 0.784402792711187 0.38520238 0.25269902 prediction 0.440123609713812 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47044999 chrX:47045000 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_119633 0 0 1 0 1 RBM10 chrX:47045029 5'GT 47045029 Upstream 30bp
chr10 103921942 103921942 1 + T C STAD 103921940 + 103921920 103921960 41 CCAAAGGCAAGTCCTTTCGGCATGAGAAAACCAAGAAGAAG CCAAAGGCAAGTCCTTTCGGCACGAGAAAACCAAGAAGAAG < 41bp 0.450019575959817 0.720055722439772 0.40909073 0.50167084 prediction 0.440111444879544 Functional Gain - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103921940 chr10:103921942 synonymous SNV . 0 23 hm5C_associated_SNPs_119637 0 0 1 0 1 NOLC1 chr10:103921868 3'AG 103921868 Downstream 75bp
chr20 31606532 31606532 1 + C T SKCM 31606531 + 31606511 31606551 41 GCATGTGGGTACCGAGGGCTCCATGGCCACCGTGGGCCTCT GCATGTGGGTACCGAGGGCTCTATGGCCACCGTGGGCCTCT < 41bp 0.483584710290635 0.720055463072029 0.21426189 0.34627423 prediction 0.440110926144058 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31606531 chr20:31606532 synonymous SNV . 0 22 hm5C_associated_SNPs_119638 0 0 1 0 2 BPIFB2 chr20:31606443 3'AG 31606443 Downstream 90bp
chr20 31606532 31606532 1 + C T SKCM 31606531 + 31606511 31606551 41 GCATGTGGGTACCGAGGGCTCCATGGCCACCGTGGGCCTCT GCATGTGGGTACCGAGGGCTCTATGGCCACCGTGGGCCTCT < 41bp 0.483584710290635 0.720055463072029 0.21426189 0.34627423 prediction 0.440110926144058 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31606531 chr20:31606532 synonymous SNV . 0 22 hm5C_associated_SNPs_119638 0 0 1 0 2 BPIFB2 chr20:31606628 5'GT 31606628 Upstream 97bp
chr11 66136997 66136997 1 - G A SKCM 66136998 - 66136978 66137018 41 CTCCCCACCTGGCAGTACTTCCAGGCGCGACTGGCCGGGGC CTCCCCACCTGGCAGTACTTCTAGGCGCGACTGGCCGGGGC < 41bp 0.563288570397467 0.783343657080678 0.9343983 0.8893889 prediction 0.440110173366422 Functional Gain - SLC29A2 ENSG00000174669 CDS Human protein_coding chr11:66136998 chr11:66136997 stopgain 0.884 0 22 hm5C_associated_SNPs_119639 0 0 1 0 1 SLC29A2 chr11:66137003 3'AG 66137003 Downstream 7bp
chr8 99140725 99140725 1 + T C UCEC 99140723 + 99140703 99140743 41 CGAAGAGCCATGAGCCACAACGTCAAACGCCTTCCCAGACG CGAAGAGCCATGAGCCACAACGCCAAACGCCTTCCCAGACG < 41bp 0.637202017904228 0.857255649648091 0.40797156 0.89609605 prediction 0.440107263487726 Functional Gain - POP1 ENSG00000104356 CDS Human protein_coding chr8:99140723 chr8:99140725 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_119640 0 0 0 0 1 POP1 chr8:99140768 5'GT 99140768 Upstream 44bp
chr11 94352990 94352990 1 + C T LUAD 94352989 + 94352969 94353009 41 CGATTCTTTACCGAAATGAACCGCACTGTACAGAACCCCCC CGATTCTTTACCGAAATGAACTGCACTGTACAGAACCCCCC < 41bp 0.463061472242298 0.720047746607737 0.15051836 0.20094666 prediction 0.440095493215473 Functional Gain - PIWIL4 ENSG00000134627 CDS Human protein_coding chr11:94352989 chr11:94352990 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_119641 0 0 0 0 1 PIWIL4 chr11:94352926 3'AG 94352926 Downstream 65bp
chr4 170613350 170613350 1 + C A STAD 170613346 + 170613326 170613366 41 TTAAAACCATCACATTAGTCCTGGCTGTGGCATCAGGTTTG TTAAAACCATCACATTAGTCCTGGATGTGGCATCAGGTTTG < 41bp 0.307332086070841 0.720047597776749 0.11251384 0.15107802 prediction 0.440095195553498 Functional Gain - CLCN3 ENSG00000109572 CDS Human protein_coding chr4:170613346 chr4:170613350 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_119642 0 0 1 0 1 CLCN3 chr4:170613265 3'AG 170613265 Downstream 86bp
chr3 52723158 52723158 1 + T G STAD 52723156 + 52723136 52723176 41 ATCCTCTTGGTTGCAGATGTCCTCAGGTAGAAGAGGCCATT ATCCTCTTGGTTGCAGATGTCCGCAGGTAGAAGAGGCCATT < 41bp 0.374075670183925 0.720045016622592 0.036810845 0.14187577 prediction 0.440090033245185 Functional Gain - GNL3 ENSG00000163938 CDS Human protein_coding chr3:52723156 chr3:52723158 synonymous SNV . 0 23 hm5C_associated_SNPs_119644 0 0 1 0 2 GNL3 chr3:52723090 3'AG 52723090 Downstream 69bp
chr3 52723158 52723158 1 + T G STAD 52723156 + 52723136 52723176 41 ATCCTCTTGGTTGCAGATGTCCTCAGGTAGAAGAGGCCATT ATCCTCTTGGTTGCAGATGTCCGCAGGTAGAAGAGGCCATT < 41bp 0.374075670183925 0.720045016622592 0.036810845 0.14187577 prediction 0.440090033245185 Functional Gain - GNL3 ENSG00000163938 CDS Human protein_coding chr3:52723156 chr3:52723158 synonymous SNV . 0 23 hm5C_associated_SNPs_119644 0 0 1 0 2 GNL3 chr3:52723222 5'GT 52723222 Upstream 65bp
chr3 107447683 107447683 1 + C A LUAD 107447682 + 107447662 107447702 41 CACAAACAAGCCTGTGAAATCCCCAACACCCACTGTCAATC CACAAACAAGCCTGTGAAATCACCAACACCCACTGTCAATC < 41bp 0.468737859844706 0.720043354299193 0.17912641 0.2522447 prediction 0.440086708598386 Functional Gain - BBX ENSG00000114439 CDS Human protein_coding chr3:107447682 chr3:107447683 synonymous SNV . 0 22 hm5C_associated_SNPs_119645 0 0 1 0 1 BBX chr3:107447612 3'AG 107447612 Downstream 72bp
chr10 35500663 35500663 1 + C G BRCA 35500662 + 35500642 35500682 41 CGAGTTGCAGTGCTGGAAGTCCAGAACAAGAAGCTTATAGA CGAGTTGCAGTGCTGGAAGTCGAGAACAAGAAGCTTATAGA < 41bp 0.582770731238518 0.802813417342544 0.46321017 0.43537524 prediction 0.440085372208051 Functional Gain - CREM ENSG00000095794 CDS Human protein_coding chr10:35500662 chr10:35500663 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_119646 0 0 1 2 1 CREM chr10:35500584 3'AG 35500584 Downstream 80bp
chr4 109088964 109088964 1 + C G rs374564051 109088960 + 109088940 109088980 41 TCTCCGCTCCGCTGTGGGAGCACCCGCGCAACAGCAGGAAA TCTCCGCTCCGCTGTGGGAGCACCGGCGCAACAGCAGGAAA < 41bp 0.437894238741995 0.720034701844348 0.5952513 0.7715719 prediction 0.440069403688697 Functional Gain - LEF1-AS1 ENSG00000232021 ncRNA_exonic Human processed_transcript chr4:109088960 chr4:109088964 . . 0 25 hm5C_associated_SNPs_119651 0 0 0 0 1 LEF1-AS1 chr4:109088989 5'GT 109088989 Upstream 26bp
chr4 141445408 141445408 1 + T A rs532004534 141445404 + 141445384 141445424 41 TGGGGAAACCGAGGCAGCTCCTGCTCCCCCTAGTTCTTCCG TGGGGAAACCGAGGCAGCTCCTGCACCCCCTAGTTCTTCCG < 41bp 0.603408577275213 0.82344149035221 0.113207966 0.17659831 prediction 0.440065826153994 Functional Gain - ELMOD2 ENSG00000179387 UTR5 Human protein_coding chr4:141445404 chr4:141445408 . . 0 25 hm5C_associated_SNPs_119652 0 0 1 0 1 ELMOD2 chr4:141445434 5'GT 141445434 Upstream 27bp
chr3 141457302 141457302 1 + T C UCEC 141457300 + 141457280 141457320 41 AAGAAGTGGAACGCGGTGGCCATGTGGAGCTGGGACGTGGA AAGAAGTGGAACGCGGTGGCCACGTGGAGCTGGGACGTGGA < 41bp 0.564642323831808 0.784674665125292 0.6735793 0.7754473 prediction 0.440064682586968 Functional Gain - RNF7 ENSG00000114125 CDS Human protein_coding chr3:141457300 chr3:141457302 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_119653 0 0 1 0 2 RNF7 chr3:141457351 5'GT 141457351 Upstream 50bp
chr3 141457302 141457302 1 + T C UCEC 141457300 + 141457280 141457320 41 AAGAAGTGGAACGCGGTGGCCATGTGGAGCTGGGACGTGGA AAGAAGTGGAACGCGGTGGCCACGTGGAGCTGGGACGTGGA < 41bp 0.564642323831808 0.784674665125292 0.6735793 0.7754473 prediction 0.440064682586968 Functional Gain - RNF7 ENSG00000114125 CDS Human protein_coding chr3:141457300 chr3:141457302 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_119653 0 0 1 0 2 RNF7 chr3:141457358 5'GT 141457358 Upstream 57bp
chr10 70856987 70856987 1 + C T UCEC 70856986 + 70856966 70857006 41 GTCTGAGGACTGACCTTTTTCCGTAAGTGGACTTTTCTCTA GTCTGAGGACTGACCTTTTTCTGTAAGTGGACTTTTCTCTA < 41bp 0.524068838428566 0.744096457657182 0.18336657 0.06782636 prediction 0.440055238457232 Functional Gain - SRGN ENSG00000122862 CDS Human protein_coding chr10:70856986 chr10:70856987 nonsynonymous SNV 0.155 0 22 hm5C_associated_SNPs_119657 0 0 1 0 1 SRGN chr10:70856987 5'GT 70856987 Upstream 1bp
chr12 108604049 108604049 1 + C A LUAD 108604048 + 108604028 108604068 41 GCCAACCGCCTCTCTGTCTACCGGCTGCAGCTGGCCCAGGA GCCAACCGCCTCTCTGTCTACAGGCTGCAGCTGGCCCAGGA < 41bp 0.598680579816817 0.818705704955814 0.7407322 0.8854125 prediction 0.440050250277994 Functional Gain - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108604048 chr12:108604049 synonymous SNV . 0 22 hm5C_associated_SNPs_119658 0 0 0 0 1 WSCD2 chr12:108604082 5'GT 108604082 Upstream 34bp
chr20 48558183 48558183 1 + C T OV 48558182 + 48558162 48558202 41 AGCGCTCTGGCACCTGGCGTCCGAGCCGTGGAGCTCGAGCG AGCGCTCTGGCACCTGGCGTCTGAGCCGTGGAGCTCGAGCG < 41bp 0.581212220179815 0.801233299912693 0.64816415 0.4628151 prediction 0.440042159465756 Functional Gain - RNF114 ENSG00000124226 CDS Human protein_coding chr20:48558182 chr20:48558183 stopgain 0.999 1 22 hm5C_associated_SNPs_119660 0 0 1 0 3 RNF114 chr20:48558098 3'AG 48558098 Downstream 86bp
chr20 48558183 48558183 1 + C T OV 48558182 + 48558162 48558202 41 AGCGCTCTGGCACCTGGCGTCCGAGCCGTGGAGCTCGAGCG AGCGCTCTGGCACCTGGCGTCTGAGCCGTGGAGCTCGAGCG < 41bp 0.581212220179815 0.801233299912693 0.64816415 0.4628151 prediction 0.440042159465756 Functional Gain - RNF114 ENSG00000124226 CDS Human protein_coding chr20:48558182 chr20:48558183 stopgain 0.999 1 22 hm5C_associated_SNPs_119660 0 0 1 0 3 RNF114 chr20:48558120 3'AG 48558120 Downstream 64bp
chr20 48558183 48558183 1 + C T OV 48558182 + 48558162 48558202 41 AGCGCTCTGGCACCTGGCGTCCGAGCCGTGGAGCTCGAGCG AGCGCTCTGGCACCTGGCGTCTGAGCCGTGGAGCTCGAGCG < 41bp 0.581212220179815 0.801233299912693 0.64816415 0.4628151 prediction 0.440042159465756 Functional Gain - RNF114 ENSG00000124226 CDS Human protein_coding chr20:48558182 chr20:48558183 stopgain 0.999 1 22 hm5C_associated_SNPs_119660 0 0 1 0 3 RNF114 chr20:48558248 5'GT 48558248 Upstream 66bp
chr11 63996741 63996741 1 + T C UCEC 63996739 + 63996719 63996759 41 GTGAACCTGCCGCTGCTCACCCTGAGCCAGCCCCTGCTGTT GTGAACCTGCCGCTGCTCACCCCGAGCCAGCCCCTGCTGTT < 41bp 0.620780400968302 0.840790110589368 0.16868216 0.47541574 prediction 0.440019419242133 Functional Gain - NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63996739 chr11:63996741 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_119662 0 0 0 0 2 NUDT22 chr11:63996719 3'AG 63996719 Downstream 23bp
chr11 63996741 63996741 1 + T C UCEC 63996739 + 63996719 63996759 41 GTGAACCTGCCGCTGCTCACCCTGAGCCAGCCCCTGCTGTT GTGAACCTGCCGCTGCTCACCCCGAGCCAGCCCCTGCTGTT < 41bp 0.620780400968302 0.840790110589368 0.16868216 0.47541574 prediction 0.440019419242133 Functional Gain - NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63996739 chr11:63996741 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_119662 0 0 0 0 2 NUDT22 chr11:63996816 5'GT 63996816 Upstream 76bp
chr13 37581180 37581180 1 + A G rs202038750 37581177 + 37581157 37581197 41 GGAAACATTTTGGATGCCTGCACATTTGCTTTGCTAGCGGC GGAAACATTTTGGATGCCTGCACGTTTGCTTTGCTAGCGGC < 41bp 0.482687996900383 0.720008823546956 0.04654035 0.07962832 prediction 0.440017647093911 Functional Gain - EXOSC8 ENSG00000120699 CDS Human protein_coding chr13:37581177 chr13:37581180 synonymous SNV . 0 24 hm5C_associated_SNPs_119663 0 0 1 0 2 EXOSC8 chr13:37581112 3'AG 37581112 Downstream 69bp
chr13 37581180 37581180 1 + A G rs202038750 37581177 + 37581157 37581197 41 GGAAACATTTTGGATGCCTGCACATTTGCTTTGCTAGCGGC GGAAACATTTTGGATGCCTGCACGTTTGCTTTGCTAGCGGC < 41bp 0.482687996900383 0.720008823546956 0.04654035 0.07962832 prediction 0.440017647093911 Functional Gain - EXOSC8 ENSG00000120699 CDS Human protein_coding chr13:37581177 chr13:37581180 synonymous SNV . 0 24 hm5C_associated_SNPs_119663 0 0 1 0 2 EXOSC8 chr13:37581208 5'GT 37581208 Upstream 29bp
chr19 13058786 13058786 1 + T C UCEC 13058784 + 13058764 13058804 41 GTCCCTATCAGGGACTATCGCATCGATGAGAAGAACTTTGT GTCCCTATCAGGGACTATCGCACCGATGAGAAGAACTTTGT < 41bp 0.442681427562068 0.720003001212791 0.8127514 0.86195564 prediction 0.440006002425582 Functional Gain - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13058784 chr19:13058786 nonsynonymous SNV 0.904 4 23 hm5C_associated_SNPs_119665 0 0 1 0 1 RAD23A chr19:13058823 5'GT 13058823 Upstream 38bp
chr20 43940969 43940969 1 + C A ESCA 43940965 + 43940945 43940985 41 GGGGGCCGGGAGCTGGGTACCTTCCACAGCCGCCTTATCAA GGGGGCCGGGAGCTGGGTACCTTCAACAGCCGCCTTATCAA < 41bp 0.282377306419006 0.7199981213063 0.36770716 0.5450939 prediction 0.439996242612601 Functional Gain - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43940965 chr20:43940969 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_119668 0 0 0 0 1 RBPJL chr20:43941035 5'GT 43941035 Upstream 67bp
chr1 118483460 118483460 1 + C T rs113562447 118483459 + 118483439 118483479 41 TTATAAAACAGATTGAAGACCCGGAAGAACCAGACCCCAAG TTATAAAACAGATTGAAGACCTGGAAGAACCAGACCCCAAG < 41bp 0.541581744419216 0.761575578566517 0.4222942 0.13134381 prediction 0.439987668294603 Functional Gain - WDR3 ENSG00000065183 CDS Human protein_coding chr1:118483459 chr1:118483460 nonsynonymous SNV 0.328 0 22 hm5C_associated_SNPs_119672 0 0 1 0 1 WDR3 chr1:118483450 3'AG 118483450 Downstream 11bp
chr9 130422360 130422360 1 + C T GBM 130422359 + 130422339 130422379 41 GACCCGCCGACTGCTAAATACCGGGCTGCACACGTCTTCTT GACCCGCCGACTGCTAAATACTGGGCTGCACACGTCTTCTT < 41bp 0.595804862760825 0.815794123589732 0.87821174 0.77947766 prediction 0.439978521657813 Functional Gain - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130422359 chr9:130422360 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_119675 0 0 1 0 2 STXBP1 chr9:130422309 3'AG 130422309 Downstream 52bp
chr9 130422360 130422360 1 + C T GBM 130422359 + 130422339 130422379 41 GACCCGCCGACTGCTAAATACCGGGCTGCACACGTCTTCTT GACCCGCCGACTGCTAAATACTGGGCTGCACACGTCTTCTT < 41bp 0.595804862760825 0.815794123589732 0.87821174 0.77947766 prediction 0.439978521657813 Functional Gain - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130422359 chr9:130422360 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_119675 0 0 1 0 2 STXBP1 chr9:130422387 5'GT 130422387 Upstream 28bp
chr5 133473769 133473769 1 + C A LIHC 133473768 + 133473748 133473788 41 AGCACAAGGCCAATCAGCCCCCCCACGGTGTCCCCCAACTC AGCACAAGGCCAATCAGCCCCACCACGGTGTCCCCCAACTC < 41bp 0.474248828262453 0.719985169420018 0.043864757 0.036872715 prediction 0.439970338840035 Functional Gain - TCF7 ENSG00000081059 CDS Human protein_coding chr5:133473768 chr5:133473769 nonsynonymous SNV 0.116 2 22 hm5C_associated_SNPs_119676 0 0 1 0 2 TCF7 chr5:133473750 3'AG 133473750 Downstream 20bp
chr5 133473769 133473769 1 + C A LIHC 133473768 + 133473748 133473788 41 AGCACAAGGCCAATCAGCCCCCCCACGGTGTCCCCCAACTC AGCACAAGGCCAATCAGCCCCACCACGGTGTCCCCCAACTC < 41bp 0.474248828262453 0.719985169420018 0.043864757 0.036872715 prediction 0.439970338840035 Functional Gain - TCF7 ENSG00000081059 CDS Human protein_coding chr5:133473768 chr5:133473769 nonsynonymous SNV 0.116 2 22 hm5C_associated_SNPs_119676 0 0 1 0 2 TCF7 chr5:133473855 5'GT 133473855 Upstream 87bp
chr10 75523716 75523716 1 + C T GBM 75523715 + 75523695 75523735 41 CCCTGGCAGCAGTCATCAAACCGCTGGCAAGGCTGCCCCCA CCCTGGCAGCAGTCATCAAACTGCTGGCAAGGCTGCCCCCA < 41bp 0.589919509781594 0.80988862701072 0.6624638 0.5066868 prediction 0.439938234458252 Functional Gain - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75523715 chr10:75523716 nonsynonymous SNV 0.606 4 22 hm5C_associated_SNPs_119682 0 0 1 0 1 SEC24C chr10:75523741 5'GT 75523741 Upstream 26bp
chr6 150285204 150285204 1 + C A COAD 150285203 + 150285183 150285223 41 ACAATGGCAGCGGCCGCCAGCCCCGCGTTCCTTCTGTGCCT ACAATGGCAGCGGCCGCCAGCACCGCGTTCCTTCTGTGCCT < 41bp 0.57433302079658 0.794289611174513 0.13361517 0.17344287 prediction 0.439913180755867 Functional Gain - ULBP1 ENSG00000111981 CDS Human protein_coding chr6:150285203 chr6:150285204 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_119688 0 0 0 0 1 ULBP1 chr6:150285270 5'GT 150285270 Upstream 67bp
chr14 23239068 23239068 1 + C T COAD 23239067 + 23239047 23239087 41 CAGCGAGAGGCAGCCAGGATCCACAATCACTTGCCAGAGAT CAGCGAGAGGCAGCCAGGATCTACAATCACTTGCCAGAGAT < 41bp 0.623985639760678 0.843934335746906 0.10562745 0.90562785 prediction 0.439897391972455 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23239067 chr14:23239068 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_119689 0 0 1 2 1 OXA1L chr14:23239000 3'AG 23239000 Downstream 69bp
chr2 32339750 32339750 1 + T C CESC 32339747 + 32339727 32339767 41 AGAAAAGACCCCTTAACACACACTAGTAATTCACTGCCTCG AGAAAAGACCCCTTAACACACACCAGTAATTCACTGCCTCG < 41bp 0.500919422348022 0.720866621733607 0.06728706 0.05729705 prediction 0.439894398771169 Functional Gain - SPAST ENSG00000021574 CDS Human protein_coding chr2:32339747 chr2:32339750 synonymous SNV . 0 24 hm5C_associated_SNPs_119690 0 0 1 0 1 SPAST chr2:32339707 3'AG 32339707 Downstream 44bp
chr17 7350229 7350229 1 + C T STAD 7350228 + 7350208 7350248 41 GCTCCGCATCACGGCGGAATCCGTGTGGCTCCCTGACGTGG GCTCCGCATCACGGCGGAATCTGTGTGGCTCCCTGACGTGG < 41bp 0.57595814573707 0.795902398960002 0.6259873 0.22254053 prediction 0.439888506445865 Functional Gain - CHRNB1 ENSG00000170175 CDS Human protein_coding chr17:7350228 chr17:7350229 synonymous SNV . 0 22 hm5C_associated_SNPs_119691 0 0 1 0 2 CHRNB1 chr17:7350152 3'AG 7350152 Downstream 78bp
chr17 7350229 7350229 1 + C T STAD 7350228 + 7350208 7350248 41 GCTCCGCATCACGGCGGAATCCGTGTGGCTCCCTGACGTGG GCTCCGCATCACGGCGGAATCTGTGTGGCTCCCTGACGTGG < 41bp 0.57595814573707 0.795902398960002 0.6259873 0.22254053 prediction 0.439888506445865 Functional Gain - CHRNB1 ENSG00000170175 CDS Human protein_coding chr17:7350228 chr17:7350229 synonymous SNV . 0 22 hm5C_associated_SNPs_119691 0 0 1 0 2 CHRNB1 chr17:7350261 5'GT 7350261 Upstream 33bp
chr11 27077110 27077110 1 + C A UCEC 27077106 + 27077086 27077126 41 AACTGTCCGTGCTCTGATTGCTACCTGGATTCCGCAAAAGC AACTGTCCGTGCTCTGATTGCTACATGGATTCCGCAAAAGC < 41bp 0.284828211894884 0.719942945665313 0.0468027 0.6566186 prediction 0.439885891330626 Functional Gain - BBOX1 ENSG00000129151 CDS Human protein_coding chr11:27077106 chr11:27077110 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_119693 0 0 0 0 1 BBOX1 chr11:27077196 5'GT 27077196 Upstream 87bp
chr11 43908189 43908189 1 + C T SKCM 43908188 + 43908168 43908208 41 GTATGAAATCAGCCTGTCACCCACAGGTGTATCTAGGTAAG GTATGAAATCAGCCTGTCACCTACAGGTGTATCTAGGTAAG < 41bp 0.463051158101089 0.719942581439128 0.01742497 0.025525331 prediction 0.439885162878255 Functional Gain - ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908188 chr11:43908189 synonymous SNV . 0 22 hm5C_associated_SNPs_119694 0 0 1 0 3 ALKBH3 chr11:43908156 3'AG 43908156 Downstream 34bp
chr11 43908189 43908189 1 + C T SKCM 43908188 + 43908168 43908208 41 GTATGAAATCAGCCTGTCACCCACAGGTGTATCTAGGTAAG GTATGAAATCAGCCTGTCACCTACAGGTGTATCTAGGTAAG < 41bp 0.463051158101089 0.719942581439128 0.01742497 0.025525331 prediction 0.439885162878255 Functional Gain - ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908188 chr11:43908189 synonymous SNV . 0 22 hm5C_associated_SNPs_119694 0 0 1 0 3 ALKBH3 chr11:43908159 3'AG 43908159 Downstream 31bp
chr11 43908189 43908189 1 + C T SKCM 43908188 + 43908168 43908208 41 GTATGAAATCAGCCTGTCACCCACAGGTGTATCTAGGTAAG GTATGAAATCAGCCTGTCACCTACAGGTGTATCTAGGTAAG < 41bp 0.463051158101089 0.719942581439128 0.01742497 0.025525331 prediction 0.439885162878255 Functional Gain - ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908188 chr11:43908189 synonymous SNV . 0 22 hm5C_associated_SNPs_119694 0 0 1 0 3 ALKBH3 chr11:43908203 5'GT 43908203 Upstream 15bp
chr3 184298803 184298803 1 + T C COAD 184298801 + 184298781 184298821 41 GATTACCGGCTGCCACCACCCATGGACTGTCCCACAGCACT GATTACCGGCTGCCACCACCCACGGACTGTCCCACAGCACT < 41bp 0.444824694953096 0.719940461962294 0.8154404 0.5304865 prediction 0.439880923924588 Functional Gain - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184298801 chr3:184298803 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_119695 0 0 0 0 1 EPHB3 chr3:184298760 3'AG 184298760 Downstream 44bp
chr3 50683147 50683147 1 + A G UCEC 50683144 + 50683124 50683164 41 TCCCTCTGCCCTGGCAGCCCCTGAGGTCCTGGGTCCAGAGA TCCCTCTGCCCTGGCAGCCCCTGGGGTCCTGGGTCCAGAGA < 41bp 0.587192688061758 0.807131903850853 0.3062095 0.7923107 prediction 0.43987843157819 Functional Gain - MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50683144 chr3:50683147 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_119696 0 0 1 0 2 MAPKAPK3 chr3:50683141 3'AG 50683141 Downstream 7bp
chr3 50683147 50683147 1 + A G UCEC 50683144 + 50683124 50683164 41 TCCCTCTGCCCTGGCAGCCCCTGAGGTCCTGGGTCCAGAGA TCCCTCTGCCCTGGCAGCCCCTGGGGTCCTGGGTCCAGAGA < 41bp 0.587192688061758 0.807131903850853 0.3062095 0.7923107 prediction 0.43987843157819 Functional Gain - MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50683144 chr3:50683147 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_119696 0 0 1 0 2 MAPKAPK3 chr3:50683216 5'GT 50683216 Upstream 70bp
chr20 35506391 35506391 1 + T C rs148789954 35506389 + 35506369 35506409 41 CTCCAGACCCAGCTGCTGCTCCTGAGGATCCCACGGTGCCC CTCCAGACCCAGCTGCTGCTCCCGAGGATCCCACGGTGCCC < 41bp 0.621256916819935 0.84119389889786 0.49117038 0.5079146 prediction 0.439873964155852 Functional Gain - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35506389 chr20:35506391 synonymous SNV . 0 23 hm5C_associated_SNPs_119697 0 0 0 0 2 TLDC2 chr20:35506302 3'AG 35506302 Downstream 90bp
chr20 35506391 35506391 1 + T C rs148789954 35506389 + 35506369 35506409 41 CTCCAGACCCAGCTGCTGCTCCTGAGGATCCCACGGTGCCC CTCCAGACCCAGCTGCTGCTCCCGAGGATCCCACGGTGCCC < 41bp 0.621256916819935 0.84119389889786 0.49117038 0.5079146 prediction 0.439873964155852 Functional Gain - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35506389 chr20:35506391 synonymous SNV . 0 23 hm5C_associated_SNPs_119697 0 0 0 0 2 TLDC2 chr20:35506457 5'GT 35506457 Upstream 67bp
chr19 35775705 35775705 1 + C G LUSC 35775701 + 35775681 35775721 41 TGCTTTCACAGACGGGACAACTTGCAGAGCTGCAACCCCAG TGCTTTCACAGACGGGACAACTTGGAGAGCTGCAACCCCAG < 41bp 0.420820973380386 0.71992644789818 0.20406386 0.45082214 prediction 0.439852895796361 Functional Gain - HAMP ENSG00000105697 CDS Human protein_coding chr19:35775701 chr19:35775705 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_119698 0 0 1 0 2 HAMP chr19:35775692 3'AG 35775692 Downstream 14bp
chr19 35775705 35775705 1 + C G LUSC 35775701 + 35775681 35775721 41 TGCTTTCACAGACGGGACAACTTGCAGAGCTGCAACCCCAG TGCTTTCACAGACGGGACAACTTGGAGAGCTGCAACCCCAG < 41bp 0.420820973380386 0.71992644789818 0.20406386 0.45082214 prediction 0.439852895796361 Functional Gain - HAMP ENSG00000105697 CDS Human protein_coding chr19:35775701 chr19:35775705 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_119698 0 0 1 0 2 HAMP chr19:35775751 5'GT 35775751 Upstream 47bp
chr20 33567498 33567498 1 + T C COAD 33567496 + 33567476 33567516 41 CGTGAAGCCGAGCTGCAGCCCATGAACCCGCCTCGCTTCGA CGTGAAGCCGAGCTGCAGCCCACGAACCCGCCTCGCTTCGA < 41bp 0.443601558221238 0.71991899135076 0.19740462 0.1368269 prediction 0.439837982701521 Functional Gain - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33567496 chr20:33567498 nonsynonymous SNV 0.852 2 23 hm5C_associated_SNPs_119700 0 0 0 0 1 MYH7B chr20:33567464 3'AG 33567464 Downstream 35bp
chr10 75255561 75255561 1 + A G UCEC 75255558 + 75255538 75255578 41 CCCCAGGGTTTCGTCCACCTCTCACCTTTGACGACGCGGTC CCCCAGGGTTTCGTCCACCTCTCGCCTTTGACGACGCGGTC < 41bp 0.493880245291185 0.719916221925068 0.025418252 0.06257659 prediction 0.439832443850136 Functional Gain - PPP3CB-AS1;PPP3CB ENSG00000221817;ENSG00000107758 ncRNA_exonic;splicing Human protein_coding chr10:75255558 chr10:75255561 . 1.000 0 24 hm5C_associated_SNPs_119701 0 0 0 0 1 PPP3CB chr10:75255575 5'GT 75255575 Upstream 15bp
chr8 143921839 143921839 1 + C G rs368117158 143921835 + 143921815 143921855 41 GGGCTCCTTCCCTTCAGGTCCAGGCTCCTGCGTGAAGTGAT GGGCTCCTTCCCTTCAGGTCCAGGGTCCTGCGTGAAGTGAT < 41bp 0.488657523464938 0.719910253014483 0.22988185 0.44755155 prediction 0.439820506028966 Functional Gain - GML ENSG00000104499 UTR5 Human protein_coding chr8:143921835 chr8:143921839 . . 0 25 hm5C_associated_SNPs_119705 0 0 0 0 1 GML chr8:143921832 3'AG 143921832 Downstream 8bp
chr9 26978259 26978259 1 + A G rs11555693 26978256 + 26978236 26978276 41 GACTGGAATGAAAACTGGGACGAAAGGTACCTATTTTAAGA GACTGGAATGAAAACTGGGACGAGAGGTACCTATTTTAAGA < 41bp 0.505778371055468 0.725686481046937 0.06486407 0.56120175 prediction 0.439816219982937 Functional Gain - IFT74 ENSG00000096872 CDS Human protein_coding chr9:26978256 chr9:26978259 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_119706 0 0 1 0 1 IFT74 chr9:26978261 5'GT 26978261 Upstream 3bp
chr1 229433272 229433272 1 + C T OV 229433271 + 229433251 229433291 41 ACTAATTGGTTAACAGATGCCCGAATGCTAGCGAGCCAGAA ACTAATTGGTTAACAGATGCCTGAATGCTAGCGAGCCAGAA < 41bp 0.596920545816917 0.816828606037699 0.14904532 0.10829428 prediction 0.439816120441564 Functional Gain - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229433271 chr1:229433272 stopgain 0.999 1 22 hm5C_associated_SNPs_119707 0 0 1 3 2 RAB4A chr1:229433229 3'AG 229433229 Downstream 44bp
chr1 229433272 229433272 1 + C T OV 229433271 + 229433251 229433291 41 ACTAATTGGTTAACAGATGCCCGAATGCTAGCGAGCCAGAA ACTAATTGGTTAACAGATGCCTGAATGCTAGCGAGCCAGAA < 41bp 0.596920545816917 0.816828606037699 0.14904532 0.10829428 prediction 0.439816120441564 Functional Gain - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229433271 chr1:229433272 stopgain 0.999 1 22 hm5C_associated_SNPs_119707 0 0 1 3 2 RAB4A chr1:229433267 3'AG 229433267 Downstream 6bp
chr8 121344952 121344952 1 + C T STAD 121344951 + 121344931 121344971 41 GGATCACAGGAAGCATGGGACCGCAAGGCGCCCTGGGACCA GGATCACAGGAAGCATGGGACTGCAAGGCGCCCTGGGACCA < 41bp 0.454005709027685 0.719904091000317 0.14041439 0.14052305 prediction 0.439808182000635 Functional Gain - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121344951 chr8:121344952 nonsynonymous SNV 0.377 2 22 hm5C_associated_SNPs_119708 0 0 0 0 2 COL14A1 chr8:121344903 3'AG 121344903 Downstream 50bp
chr8 121344952 121344952 1 + C T STAD 121344951 + 121344931 121344971 41 GGATCACAGGAAGCATGGGACCGCAAGGCGCCCTGGGACCA GGATCACAGGAAGCATGGGACTGCAAGGCGCCCTGGGACCA < 41bp 0.454005709027685 0.719904091000317 0.14041439 0.14052305 prediction 0.439808182000635 Functional Gain - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121344951 chr8:121344952 nonsynonymous SNV 0.377 2 22 hm5C_associated_SNPs_119708 0 0 0 0 2 COL14A1 chr8:121344974 5'GT 121344974 Upstream 23bp
chr2 228128640 228128640 1 + C T KIRC 228128639 + 228128619 228128659 41 CACCAGGTCTTCCAGGATCACCGGGACCTCCAGGACCGCCA CACCAGGTCTTCCAGGATCACTGGGACCTCCAGGACCGCCA < 41bp 0.542794384317578 0.762696623797245 0.90963566 0.908804 prediction 0.439804478959334 Functional Gain - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228128639 chr2:228128640 nonsynonymous SNV 0.019 4 22 hm5C_associated_SNPs_119710 0 0 0 0 1 COL4A3 chr2:228128660 5'GT 228128660 Upstream 21bp
chr9 116994128 116994128 1 + C T GBM 116994127 + 116994107 116994147 41 GATGGGCAGCGTGGGGGAGCCCGGACTGAAAGGTGATAAGG GATGGGCAGCGTGGGGGAGCCTGGACTGAAAGGTGATAAGG < 41bp 0.476793863701752 0.719895760139654 0.89021444 0.90620244 prediction 0.439791520279308 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116994127 chr9:116994128 synonymous SNV . 0 22 hm5C_associated_SNPs_119715 0 0 1 0 3 COL27A1 chr9:116994102 3'AG 116994102 Downstream 27bp
chr9 116994128 116994128 1 + C T GBM 116994127 + 116994107 116994147 41 GATGGGCAGCGTGGGGGAGCCCGGACTGAAAGGTGATAAGG GATGGGCAGCGTGGGGGAGCCTGGACTGAAAGGTGATAAGG < 41bp 0.476793863701752 0.719895760139654 0.89021444 0.90620244 prediction 0.439791520279308 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116994127 chr9:116994128 synonymous SNV . 0 22 hm5C_associated_SNPs_119715 0 0 1 0 3 COL27A1 chr9:116994138 5'GT 116994138 Upstream 11bp
chr9 116994128 116994128 1 + C T GBM 116994127 + 116994107 116994147 41 GATGGGCAGCGTGGGGGAGCCCGGACTGAAAGGTGATAAGG GATGGGCAGCGTGGGGGAGCCTGGACTGAAAGGTGATAAGG < 41bp 0.476793863701752 0.719895760139654 0.89021444 0.90620244 prediction 0.439791520279308 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116994127 chr9:116994128 synonymous SNV . 0 22 hm5C_associated_SNPs_119715 0 0 1 0 3 COL27A1 chr9:116994146 5'GT 116994146 Upstream 19bp
chr1 110765651 110765651 1 + T C rs144767142 110765649 + 110765629 110765669 41 CCACTTTCTGCCTGGAGACCCATGAGGCCTTTAATATCGAC CCACTTTCTGCCTGGAGACCCACGAGGCCTTTAATATCGAC < 41bp 0.435419389901721 0.719892453349913 0.1730187 0.24969831 prediction 0.439784906699827 Functional Gain - KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110765649 chr1:110765651 synonymous SNV . 0 23 hm5C_associated_SNPs_119716 0 0 0 0 1 KCNC4 chr1:110765586 3'AG 110765586 Downstream 66bp
chr17 2278880 2278880 1 + C T GBM 2278879 + 2278859 2278899 41 AGGAAGCAGGACCCGGGACTCCGGGCACCGCCGTGGTGGAG AGGAAGCAGGACCCGGGACTCTGGGCACCGCCGTGGTGGAG < 41bp 0.55714651357957 0.777038914532686 0.90128285 0.795727 prediction 0.439784801906232 Functional Gain - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2278879 chr17:2278880 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_119717 0 0 1 0 1 SGSM2 chr17:2278786 3'AG 2278786 Downstream 95bp
chr2 10911980 10911980 1 + C A LUAD 10911979 + 10911959 10911999 41 TTTTAGGGGGAACCTCTTCACCCGGACACTGAGTGATATTG TTTTAGGGGGAACCTCTTCACACGGACACTGAGTGATATTG < 41bp 0.614752191025431 0.83464212459526 0.05385837 0.079273105 prediction 0.439779867139658 Functional Gain - ATP6V1C2 ENSG00000143882 CDS Human protein_coding chr2:10911979 chr2:10911980 synonymous SNV . 0 22 hm5C_associated_SNPs_119718 0 0 0 0 2 ATP6V1C2 chr2:10911965 3'AG 10911965 Downstream 16bp
chr2 10911980 10911980 1 + C A LUAD 10911979 + 10911959 10911999 41 TTTTAGGGGGAACCTCTTCACCCGGACACTGAGTGATATTG TTTTAGGGGGAACCTCTTCACACGGACACTGAGTGATATTG < 41bp 0.614752191025431 0.83464212459526 0.05385837 0.079273105 prediction 0.439779867139658 Functional Gain - ATP6V1C2 ENSG00000143882 CDS Human protein_coding chr2:10911979 chr2:10911980 synonymous SNV . 0 22 hm5C_associated_SNPs_119718 0 0 0 0 2 ATP6V1C2 chr2:10912063 5'GT 10912063 Upstream 84bp
chr9 135919198 135919198 1 + C T STAD 135919197 + 135919177 135919217 41 TATGACAAGGTGCTCATGCTCCGGCCCGAGAAGGAGGCCTT TATGACAAGGTGCTCATGCTCTGGCCCGAGAAGGAGGCCTT < 41bp 0.471579344666602 0.719888416061226 0.8917267 0.49931684 prediction 0.439776832122451 Functional Gain - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919197 chr9:135919198 nonsynonymous SNV 0.355 4 22 hm5C_associated_SNPs_119720 0 0 1 0 1 GTF3C5 chr9:135919115 3'AG 135919115 Downstream 84bp
chr16 84693494 84693494 1 + C A UCEC 84693490 + 84693470 84693510 41 AGAGACGTACAGTCCCAAGACTGACTCCTGGTCCTATGTGG AGAGACGTACAGTCCCAAGACTGAATCCTGGTCCTATGTGG < 41bp 0.293981586527209 0.719881112180313 0.11974466 0.2670641 prediction 0.439762224360627 Functional Gain - KLHL36 ENSG00000135686 CDS Human protein_coding chr16:84693490 chr16:84693494 nonsynonymous SNV 0.994 2 25 hm5C_associated_SNPs_119723 0 0 1 0 1 KLHL36 chr16:84693523 5'GT 84693523 Upstream 30bp
chrX 48629416 48629416 1 + A G STAD 48629413 + 48629393 48629433 41 GGTGGGAAAGGAATTTGAACCCAAAGCCGCTCACCCAGTTC GGTGGGAAAGGAATTTGAACCCAGAGCCGCTCACCCAGTTC < 41bp 0.545256976223474 0.765132202655227 0.18628386 0.32497966 prediction 0.439750452863505 Functional Gain - GLOD5 ENSG00000171433 CDS Human protein_coding chrX:48629413 chrX:48629416 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_119726 0 0 0 0 2 GLOD5 chrX:48629343 3'AG 48629343 Downstream 74bp
chrX 48629416 48629416 1 + A G STAD 48629413 + 48629393 48629433 41 GGTGGGAAAGGAATTTGAACCCAAAGCCGCTCACCCAGTTC GGTGGGAAAGGAATTTGAACCCAGAGCCGCTCACCCAGTTC < 41bp 0.545256976223474 0.765132202655227 0.18628386 0.32497966 prediction 0.439750452863505 Functional Gain - GLOD5 ENSG00000171433 CDS Human protein_coding chrX:48629413 chrX:48629416 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_119726 0 0 0 0 2 GLOD5 chrX:48629498 5'GT 48629498 Upstream 83bp
chr10 95400298 95400298 1 + T G STAD 95400296 + 95400276 95400316 41 GGGTTCAACGTGGGGCAGACCATGTTTACTTTGCTGATGGT GGGTTCAACGTGGGGCAGACCAGGTTTACTTTGCTGATGGT < 41bp 0.363483386259269 0.719870908119325 0.06294924 0.41278985 prediction 0.439741816238649 Functional Gain - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95400296 chr10:95400298 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_119727 0 0 0 0 2 PDE6C chr10:95400207 3'AG 95400207 Downstream 92bp
chr10 95400298 95400298 1 + T G STAD 95400296 + 95400276 95400316 41 GGGTTCAACGTGGGGCAGACCATGTTTACTTTGCTGATGGT GGGTTCAACGTGGGGCAGACCAGGTTTACTTTGCTGATGGT < 41bp 0.363483386259269 0.719870908119325 0.06294924 0.41278985 prediction 0.439741816238649 Functional Gain - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95400296 chr10:95400298 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_119727 0 0 0 0 2 PDE6C chr10:95400314 5'GT 95400314 Upstream 17bp
chr8 42262979 42262979 1 + A G rs147177887 42262976 + 42262956 42262996 41 CTTGGGATTTGAACTGGAAGCTTAATGTGGTTTGAGGAAAG CTTGGGATTTGAACTGGAAGCTTGATGTGGTTTGAGGAAAG < 41bp 0.529931127834741 0.749801351865799 0.21137223 0.12551284 prediction 0.439740448062115 Functional Gain - VDAC3 ENSG00000078668 CDS Human protein_coding chr8:42262976 chr8:42262979 synonymous SNV . 0 24 hm5C_associated_SNPs_119728 0 0 1 0 1 VDAC3 chr8:42262889 3'AG 42262889 Downstream 91bp
chr3 47456126 47456126 1 + T A UCEC 47456122 + 47456102 47456142 41 TGAAGGGTGAAGAGGCAGCACGAGTCCTCCAGACGGAACAC TGAAGGGTGAAGAGGCAGCACGAGACCTCCAGACGGAACAC < 41bp 0.65451547314411 0.874379748561967 0.24893388 0.7728297 prediction 0.439728550835715 Functional Gain - SCAP ENSG00000114650 CDS Human protein_coding chr3:47456122 chr3:47456126 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_119729 0 0 0 0 1 SCAP chr3:47456053 3'AG 47456053 Downstream 74bp
chr3 51979588 51979588 1 + C A rs201530765 51979584 + 51979564 51979604 41 GAAGACGGTGGAGGAGGTGCCACACCCCCTGGACCGAGACT GAAGACGGTGGAGGAGGTGCCACAACCCCTGGACCGAGACT < 41bp 0.298927627984404 0.719855335348721 0.3111216 0.32702118 prediction 0.439710670697442 Functional Gain - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51979584 chr3:51979588 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_119734 0 0 1 0 2 PARP3 chr3:51979511 3'AG 51979511 Downstream 78bp
chr3 51979588 51979588 1 + C A rs201530765 51979584 + 51979564 51979604 41 GAAGACGGTGGAGGAGGTGCCACACCCCCTGGACCGAGACT GAAGACGGTGGAGGAGGTGCCACAACCCCTGGACCGAGACT < 41bp 0.298927627984404 0.719855335348721 0.3111216 0.32702118 prediction 0.439710670697442 Functional Gain - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51979584 chr3:51979588 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_119734 0 0 1 0 2 PARP3 chr3:51979660 5'GT 51979660 Upstream 73bp
chr2 48555727 48555727 1 + C G rs78643364 48555726 + 48555706 48555746 41 GAAGCCATGGATAACAGAACCCACAGATGCAGAGGGCTGAC GAAGCCATGGATAACAGAACCGACAGATGCAGAGGGCTGAC < 41bp 0.458465227609874 0.719851239272527 0.069505095 0.27891487 prediction 0.439702478545053 Functional Gain - FOXN2 ENSG00000170802 UTR5 Human protein_coding chr2:48555726 chr2:48555727 . . 0 22 hm5C_associated_SNPs_119737 0 0 1 0 1 FOXN2 chr2:48555700 3'AG 48555700 Downstream 28bp
chr10 99343381 99343381 1 + C T UCEC 99343380 + 99343360 99343400 41 CAGCTCTGGCAGGCTGATACCCGGCACGCCCTGGAGCATCC CAGCTCTGGCAGGCTGATACCTGGCACGCCCTGGAGCATCC < 41bp 0.568889154080582 0.788736140149297 0.14866808 0.16524431 prediction 0.439693972137431 Functional Gain - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99343380 chr10:99343381 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_119738 0 0 0 0 1 ANKRD2 chr10:99343333 3'AG 99343333 Downstream 49bp
chr2 74076541 74076541 1 + C A COAD 74076540 + 74076520 74076560 41 TGGTGCCTGGGCGGCTGTGCCCACAGTTTCTCCAGTTAGCC TGGTGCCTGGGCGGCTGTGCCAACAGTTTCTCCAGTTAGCC < 41bp 0.600555870477488 0.820394390292281 0.060693294 0.14228082 prediction 0.439677039629585 Functional Gain - STAMBP ENSG00000124356 CDS Human protein_coding chr2:74076540 chr2:74076541 nonsynonymous SNV 0.812 0 22 hm5C_associated_SNPs_119742 0 0 1 0 2 STAMBP chr2:74076490 3'AG 74076490 Downstream 52bp
chr2 74076541 74076541 1 + C A COAD 74076540 + 74076520 74076560 41 TGGTGCCTGGGCGGCTGTGCCCACAGTTTCTCCAGTTAGCC TGGTGCCTGGGCGGCTGTGCCAACAGTTTCTCCAGTTAGCC < 41bp 0.600555870477488 0.820394390292281 0.060693294 0.14228082 prediction 0.439677039629585 Functional Gain - STAMBP ENSG00000124356 CDS Human protein_coding chr2:74076540 chr2:74076541 nonsynonymous SNV 0.812 0 22 hm5C_associated_SNPs_119742 0 0 1 0 2 STAMBP chr2:74076614 5'GT 74076614 Upstream 74bp
chr19 15807813 15807813 1 + C T SKCM 15807812 + 15807792 15807832 41 TCCTGCCAGACCACACTGAGCCCCGCAGGAAGCTGGAATTG TCCTGCCAGACCACACTGAGCTCCGCAGGAAGCTGGAATTG < 41bp 0.577130789707668 0.79696757575465 0.24832228 0.18350166 prediction 0.439673572093965 Functional Gain - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15807812 chr19:15807813 nonsynonymous SNV 0.108 1 22 hm5C_associated_SNPs_119743 0 0 1 0 1 CYP4F12 chr19:15807718 3'AG 15807718 Downstream 96bp
chrX 48564667 48564667 1 + A G UCEC 48564664 + 48564644 48564684 41 CCCTTTCCCTAGATCATTACCTCAGAGGAGGCAGAGCGGCG CCCTTTCCCTAGATCATTACCTCGGAGGAGGCAGAGCGGCG < 41bp 0.472721233682294 0.719836488151593 0.15696993 0.19248468 prediction 0.439672976303186 Functional Gain - SUV39H1 ENSG00000101945 CDS Human protein_coding chrX:48564664 chrX:48564667 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_119744 0 0 0 0 1 SUV39H1 chrX:48564656 3'AG 48564656 Downstream 12bp
chr14 94731258 94731258 1 + T C COAD 94731256 + 94731236 94731276 41 CAACAGAATGATGGAAGGCCCATGAGTGATAAAATGTTTGA CAACAGAATGATGGAAGGCCCACGAGTGATAAAATGTTTGA < 41bp 0.441001598680104 0.719835674510068 0.1432319 0.5604086 prediction 0.439671349020137 Functional Gain - PPP4R4 ENSG00000119698 CDS Human protein_coding chr14:94731256 chr14:94731258 nonsynonymous SNV 0.048 0 23 hm5C_associated_SNPs_119745 0 0 1 0 2 PPP4R4 chr14:94731215 3'AG 94731215 Downstream 44bp
chr14 94731258 94731258 1 + T C COAD 94731256 + 94731236 94731276 41 CAACAGAATGATGGAAGGCCCATGAGTGATAAAATGTTTGA CAACAGAATGATGGAAGGCCCACGAGTGATAAAATGTTTGA < 41bp 0.441001598680104 0.719835674510068 0.1432319 0.5604086 prediction 0.439671349020137 Functional Gain - PPP4R4 ENSG00000119698 CDS Human protein_coding chr14:94731256 chr14:94731258 nonsynonymous SNV 0.048 0 23 hm5C_associated_SNPs_119745 0 0 1 0 2 PPP4R4 chr14:94731284 5'GT 94731284 Upstream 27bp
chr12 27832956 27832956 1 + C T SKCM 27832955 + 27832935 27832975 41 GACAAGGGCAACCGCGGGGCCCCGATTAGGTTGGTCTCGAG GACAAGGGCAACCGCGGGGCCTCGATTAGGTTGGTCTCGAG < 41bp 0.615042751087968 0.834877748152549 0.18504474 0.9291995 prediction 0.439669994129162 Functional Gain - PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27832955 chr12:27832956 synonymous SNV . 0 22 hm5C_associated_SNPs_119746 0 0 0 0 2 PPFIBP1 chr12:27832866 3'AG 27832866 Downstream 91bp
chr12 27832956 27832956 1 + C T SKCM 27832955 + 27832935 27832975 41 GACAAGGGCAACCGCGGGGCCCCGATTAGGTTGGTCTCGAG GACAAGGGCAACCGCGGGGCCTCGATTAGGTTGGTCTCGAG < 41bp 0.615042751087968 0.834877748152549 0.18504474 0.9291995 prediction 0.439669994129162 Functional Gain - PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27832955 chr12:27832956 synonymous SNV . 0 22 hm5C_associated_SNPs_119746 0 0 0 0 2 PPFIBP1 chr12:27832994 5'GT 27832994 Upstream 39bp
chr12 50501526 50501526 1 + T C STAD 50501523 + 50501503 50501543 41 TGTGGTGTTGCTGACCTGATCACTACCTGCTATGGAGGGCG TGTGGTGTTGCTGACCTGATCACCACCTGCTATGGAGGGCG < 41bp 0.541634921431615 0.761460164940676 0.32585132 0.27521342 prediction 0.439650487018122 Functional Gain - GPD1 ENSG00000167588 CDS Human protein_coding chr12:50501523 chr12:50501526 synonymous SNV . 0 24 hm5C_associated_SNPs_119748 0 0 0 0 1 GPD1 chr12:50501583 5'GT 50501583 Upstream 58bp
chr19 4312042 4312042 1 + C G rs35139245 4312041 + 4312021 4312061 41 ATCCGGCAGACAGAGTACACCCTGACAGGTAAGGGCAGTGT ATCCGGCAGACAGAGTACACCGTGACAGGTAAGGGCAGTGT < 41bp 0.392948329042782 0.719823617176036 0.117841005 0.4480444 prediction 0.439647234352072 Functional Gain - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4312041 chr19:4312042 nonsynonymous SNV 0.809 1 22 hm5C_associated_SNPs_119750 0 0 1 0 1 FSD1 chr19:4312048 5'GT 4312048 Upstream 7bp
chr2 33585818 33585818 1 + A G SKCM 33585815 + 33585795 33585835 41 GTGGGATGGGGAGATAACTGCGAAATCTTCCCCTGCCCGGT GTGGGATGGGGAGATAACTGCGAGATCTTCCCCTGCCCGGT < 41bp 0.574561951644147 0.794377042131054 0.89514995 0.93115294 prediction 0.439630180973815 Functional Gain - LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33585815 chr2:33585818 synonymous SNV . 0 24 hm5C_associated_SNPs_119753 0 0 1 0 1 LTBP1 chr2:33585846 5'GT 33585846 Upstream 29bp
chr20 2842740 2842740 1 + C T UCEC 2842739 + 2842719 2842759 41 CAAAATTGCCTCAATGGCCCCCGGGGCGCTGCTCCTGGAGG CAAAATTGCCTCAATGGCCCCTGGGGCGCTGCTCCTGGAGG < 41bp 0.479309571633829 0.719814223304484 0.42095962 0.7151197 prediction 0.439628446608969 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2842739 chr20:2842740 synonymous SNV . 0 22 hm5C_associated_SNPs_119754 0 0 1 0 2 VPS16 chr20:2842700 3'AG 2842700 Downstream 41bp
chr20 2842740 2842740 1 + C T UCEC 2842739 + 2842719 2842759 41 CAAAATTGCCTCAATGGCCCCCGGGGCGCTGCTCCTGGAGG CAAAATTGCCTCAATGGCCCCTGGGGCGCTGCTCCTGGAGG < 41bp 0.479309571633829 0.719814223304484 0.42095962 0.7151197 prediction 0.439628446608969 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2842739 chr20:2842740 synonymous SNV . 0 22 hm5C_associated_SNPs_119754 0 0 1 0 2 VPS16 chr20:2842776 5'GT 2842776 Upstream 37bp
chr2 113763600 113763600 1 + T C UCEC 113763598 + 113763578 113763618 41 GGAGCATTCAGGATATCAATCATCGGGTGTGGGTTCTTCAG GGAGCATTCAGGATATCAATCACCGGGTGTGGGTTCTTCAG < 41bp 0.60955273735919 0.829364075423254 0.29086787 0.29389364 prediction 0.439622676128127 Functional Gain - IL36A ENSG00000136694 CDS Human protein_coding chr2:113763598 chr2:113763600 synonymous SNV . 0 23 hm5C_associated_SNPs_119755 0 0 0 0 2 IL36A chr2:113763551 3'AG 113763551 Downstream 50bp
chr2 113763600 113763600 1 + T C UCEC 113763598 + 113763578 113763618 41 GGAGCATTCAGGATATCAATCATCGGGTGTGGGTTCTTCAG GGAGCATTCAGGATATCAATCACCGGGTGTGGGTTCTTCAG < 41bp 0.60955273735919 0.829364075423254 0.29086787 0.29389364 prediction 0.439622676128127 Functional Gain - IL36A ENSG00000136694 CDS Human protein_coding chr2:113763598 chr2:113763600 synonymous SNV . 0 23 hm5C_associated_SNPs_119755 0 0 0 0 2 IL36A chr2:113763664 5'GT 113763664 Upstream 65bp
chr1 245848752 245848752 1 + C T UCEC 245848751 + 245848731 245848771 41 GAGAGCTCCTGCGAAGAAGGCCGCATGCGCAGGCCCACCCA GAGAGCTCCTGCGAAGAAGGCTGCATGCGCAGGCCCACCCA < 41bp 0.481671225793545 0.719809426218549 0.5115368 0.3715343 prediction 0.439618852437098 Functional Gain - KIF26B ENSG00000162849 CDS Human protein_coding chr1:245848751 chr1:245848752 nonsynonymous SNV 0.992 3 22 hm5C_associated_SNPs_119756 0 0 0 0 1 KIF26B chr1:245848707 3'AG 245848707 Downstream 46bp
chr6 52303291 52303291 1 + C G rs3804506 52303290 + 52303270 52303310 41 CAGCGGCTAGCCAAGAATGACCGGGGTGACCATTACCATTG CAGCGGCTAGCCAAGAATGACGGGGGTGACCATTACCATTG < 41bp 0.663320048856601 0.883121271137609 0.91024613 0.92893755 prediction 0.439602444562016 Functional Gain - EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52303290 chr6:52303291 nonsynonymous SNV 0.975 0 22 hm5C_associated_SNPs_119757 4 0 0 0 1 EFHC1 chr6:52303389 5'GT 52303389 Upstream 99bp
chr6 52546657 52546657 1 + C T UCEC 52546656 + 52546636 52546676 41 TCTTTTTGTTGGATGTTTGGCCGGCTATGGAGCTTACCGTG TCTTTTTGTTGGATGTTTGGCTGGCTATGGAGCTTACCGTG < 41bp 0.532655947551921 0.752457158197459 0.8230587 0.5464679 prediction 0.439602421291075 Functional Gain - TMEM14A ENSG00000096092 CDS Human protein_coding chr6:52546656 chr6:52546657 synonymous SNV . 0 22 hm5C_associated_SNPs_119758 0 0 1 0 2 TMEM14A chr6:52546611 3'AG 52546611 Downstream 47bp
chr6 52546657 52546657 1 + C T UCEC 52546656 + 52546636 52546676 41 TCTTTTTGTTGGATGTTTGGCCGGCTATGGAGCTTACCGTG TCTTTTTGTTGGATGTTTGGCTGGCTATGGAGCTTACCGTG < 41bp 0.532655947551921 0.752457158197459 0.8230587 0.5464679 prediction 0.439602421291075 Functional Gain - TMEM14A ENSG00000096092 CDS Human protein_coding chr6:52546656 chr6:52546657 synonymous SNV . 0 22 hm5C_associated_SNPs_119758 0 0 1 0 2 TMEM14A chr6:52546712 5'GT 52546712 Upstream 56bp
chr6 42147046 42147046 1 + A G UCEC 42147043 + 42147023 42147063 41 ACCAGATGCTCCTGGACACACTGACACGAAGCCTGGACCTT ACCAGATGCTCCTGGACACACTGGCACGAAGCCTGGACCTT < 41bp 0.477150058366528 0.719798920481314 0.078594714 0.20990688 prediction 0.439597840962628 Functional Gain - GUCA1A ENSG00000048545 CDS Human protein_coding chr6:42147043 chr6:42147046 nonsynonymous SNV 0.982 0 24 hm5C_associated_SNPs_119761 0 0 0 0 1 GUCA1A chr6:42146981 3'AG 42146981 Downstream 66bp
chr9 32450092 32450092 1 + C T UCEC 32450091 + 32450071 32450111 41 GGCATCCTCAACTACATGATCCGCAAGATGGCCAAGTAGGA GGCATCCTCAACTACATGATCTGCAAGATGGCCAAGTAGGA < 41bp 0.466791069379898 0.719798653476494 0.024940073 0.049385488 prediction 0.439597306952988 Functional Gain - ACO1 ENSG00000122729 CDS Human protein_coding chr9:32450091 chr9:32450092 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_119762 0 0 1 0 1 ACO1 chr9:32449996 3'AG 32449996 Downstream 97bp
chrX 54578064 54578064 1 + A G LAML 54578061 + 54578041 54578081 41 TTGGATGCTCCAGGCATTGTCCCAGGGCCCAACTCAGAGGT TTGGATGCTCCAGGCATTGTCCCGGGGCCCAACTCAGAGGT < 41bp 0.468369368572212 0.7197922939178 0.46179882 0.89256454 prediction 0.439584587835599 Functional Gain - GNL3L ENSG00000130119 CDS Human protein_coding chrX:54578061 chrX:54578064 synonymous SNV . 0 24 hm5C_associated_SNPs_119763 0 0 1 0 1 GNL3L chrX:54578001 3'AG 54578001 Downstream 64bp
chr4 1808029 1808029 1 + C G HNSC 1808028 + 1808008 1808048 41 GCGCCTGAGGCCTTGTTTGACCGAGTCTACACTCACCAGAG GCGCCTGAGGCCTTGTTTGACGGAGTCTACACTCACCAGAG < 41bp 0.398242663136498 0.719789887682603 0.70732594 0.88759744 prediction 0.439579775365207 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1808028 chr4:1808029 nonsynonymous SNV 0.983 4 22 hm5C_associated_SNPs_119765 0 0 1 0 2 FGFR3 chr4:1807984 3'AG 1807984 Downstream 46bp
chr4 1808029 1808029 1 + C G HNSC 1808028 + 1808008 1808048 41 GCGCCTGAGGCCTTGTTTGACCGAGTCTACACTCACCAGAG GCGCCTGAGGCCTTGTTTGACGGAGTCTACACTCACCAGAG < 41bp 0.398242663136498 0.719789887682603 0.70732594 0.88759744 prediction 0.439579775365207 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1808028 chr4:1808029 nonsynonymous SNV 0.983 4 22 hm5C_associated_SNPs_119765 0 0 1 0 2 FGFR3 chr4:1808054 5'GT 1808054 Upstream 26bp
chr6 33371612 33371612 1 + T C LIHC 33371610 + 33371590 33371630 41 ATGCAGAACTAAAACGGTGCCGTGAGAGGACTCAAACGTTG ATGCAGAACTAAAACGGTGCCGCGAGAGGACTCAAACGTTG < 41bp 0.436964919485105 0.719786958634191 0.4254129 0.44236332 prediction 0.439573917268382 Functional Gain - KIFC1 ENSG00000237649 CDS Human protein_coding chr6:33371610 chr6:33371612 synonymous SNV . 0 23 hm5C_associated_SNPs_119768 0 0 1 0 1 KIFC1 chr6:33371530 3'AG 33371530 Downstream 83bp
chr17 26817738 26817738 1 + C A LUSC 26817734 + 26817714 26817754 41 CCTAGGCTAATCCTGGGCTTCATGCTGGTCACGGCCTTCCT CCTAGGCTAATCCTGGGCTTCATGATGGTCACGGCCTTCCT < 41bp 0.303967160127816 0.719784939481763 0.13046584 0.19581899 prediction 0.439569878963526 Functional Gain - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26817734 chr17:26817738 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_119770 0 0 0 0 1 SLC13A2 chr17:26817719 3'AG 26817719 Downstream 20bp
chr14 51352376 51352376 1 + A G STAD 51352373 + 51352353 51352393 41 CATGTCTTGTCTGTTGACTACAGAGGTATGTGTTAAGAACG CATGTCTTGTCTGTTGACTACAGGGGTATGTGTTAAGAACG < 41bp 0.561272982610057 0.7810482888008 0.3284655 0.5843327 prediction 0.439550612381486 Functional Gain - ABHD12B ENSG00000131969 CDS Human protein_coding chr14:51352373 chr14:51352376 synonymous SNV . 0 24 hm5C_associated_SNPs_119771 0 0 0 0 2 ABHD12B chr14:51352332 3'AG 51352332 Downstream 45bp
chr14 51352376 51352376 1 + A G STAD 51352373 + 51352353 51352393 41 CATGTCTTGTCTGTTGACTACAGAGGTATGTGTTAAGAACG CATGTCTTGTCTGTTGACTACAGGGGTATGTGTTAAGAACG < 41bp 0.561272982610057 0.7810482888008 0.3284655 0.5843327 prediction 0.439550612381486 Functional Gain - ABHD12B ENSG00000131969 CDS Human protein_coding chr14:51352373 chr14:51352376 synonymous SNV . 0 24 hm5C_associated_SNPs_119771 0 0 0 0 2 ABHD12B chr14:51352377 5'GT 51352377 Upstream 2bp
chr2 234372891 234372891 1 + C A COAD 234372887 + 234372867 234372907 41 CAGCTCAGGAGGCTGGCAGACACCCCGTGGCTCTGCCAGTC CAGCTCAGGAGGCTGGCAGACACCACGTGGCTCTGCCAGTC < 41bp 0.284914620769031 0.719762817722812 0.13873592 0.12865171 prediction 0.439525635445624 Functional Gain - DGKD ENSG00000077044 CDS Human protein_coding chr2:234372887 chr2:234372891 nonsynonymous SNV 0.791 0 25 hm5C_associated_SNPs_119775 0 0 1 0 2 DGKD chr2:234372810 3'AG 234372810 Downstream 82bp
chr2 234372891 234372891 1 + C A COAD 234372887 + 234372867 234372907 41 CAGCTCAGGAGGCTGGCAGACACCCCGTGGCTCTGCCAGTC CAGCTCAGGAGGCTGGCAGACACCACGTGGCTCTGCCAGTC < 41bp 0.284914620769031 0.719762817722812 0.13873592 0.12865171 prediction 0.439525635445624 Functional Gain - DGKD ENSG00000077044 CDS Human protein_coding chr2:234372887 chr2:234372891 nonsynonymous SNV 0.791 0 25 hm5C_associated_SNPs_119775 0 0 1 0 2 DGKD chr2:234372929 5'GT 234372929 Upstream 39bp
chr5 128983511 128983511 1 + C T LUAD 128983510 + 128983490 128983530 41 CTCAGCACCTGAACATCTGGCCGGAGAGTGGAGCCTGTGGA CTCAGCACCTGAACATCTGGCTGGAGAGTGGAGCCTGTGGA < 41bp 0.602350745406068 0.822113428498499 0.4117242 0.17534012 prediction 0.439525366184861 Functional Gain - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:128983510 chr5:128983511 synonymous SNV . 0 22 hm5C_associated_SNPs_119776 0 0 0 0 2 ADAMTS19 chr5:128983458 3'AG 128983458 Downstream 54bp
chr5 128983511 128983511 1 + C T LUAD 128983510 + 128983490 128983530 41 CTCAGCACCTGAACATCTGGCCGGAGAGTGGAGCCTGTGGA CTCAGCACCTGAACATCTGGCTGGAGAGTGGAGCCTGTGGA < 41bp 0.602350745406068 0.822113428498499 0.4117242 0.17534012 prediction 0.439525366184861 Functional Gain - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:128983510 chr5:128983511 synonymous SNV . 0 22 hm5C_associated_SNPs_119776 0 0 0 0 2 ADAMTS19 chr5:128983588 5'GT 128983588 Upstream 78bp
chr17 9745900 9745900 1 + C T UCEC 9745899 + 9745879 9745919 41 GGATATTTGGCAGGATGACTCCGAATGCTCCGAGAACCACA GGATATTTGGCAGGATGACTCTGAATGCTCCGAGAACCACA < 41bp 0.585698388165133 0.805451540254447 0.3807046 0.21439502 prediction 0.439506304178628 Functional Gain - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9745899 chr17:9745900 synonymous SNV . 0 22 hm5C_associated_SNPs_119779 0 0 0 0 1 GLP2R chr17:9745812 3'AG 9745812 Downstream 89bp
chr11 1078339 1078339 1 + C T KIRP 1078338 + 1078318 1078358 41 CCGATGTGGTGTGTGAGGATCCCGAGGAGGAGGTGGCCCCC CCGATGTGGTGTGTGAGGATCTCGAGGAGGAGGTGGCCCCC < 41bp 0.575910196949265 0.795662260015094 0.5376904 0.88358927 prediction 0.439504126131657 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1078338 chr11:1078339 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_119780 0 0 0 0 2 MUC2 chr11:1078267 3'AG 1078267 Downstream 73bp
chr11 1078339 1078339 1 + C T KIRP 1078338 + 1078318 1078358 41 CCGATGTGGTGTGTGAGGATCCCGAGGAGGAGGTGGCCCCC CCGATGTGGTGTGTGAGGATCTCGAGGAGGAGGTGGCCCCC < 41bp 0.575910196949265 0.795662260015094 0.5376904 0.88358927 prediction 0.439504126131657 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1078338 chr11:1078339 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_119780 0 0 0 0 2 MUC2 chr11:1078376 5'GT 1078376 Upstream 38bp
chr9 131115773 131115773 1 + T C LAML 131115771 + 131115751 131115791 41 GTACGTGTCAACGAGGACACCATGGAGCTGATCCGGGGGCC GTACGTGTCAACGAGGACACCACGGAGCTGATCCGGGGGCC < 41bp 0.598709739337446 0.818460505472233 0.16932628 0.4267643 prediction 0.439501532269575 Functional Gain - SLC27A4 ENSG00000167114 CDS Human protein_coding chr9:131115771 chr9:131115773 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_119781 0 0 1 0 2 SLC27A4 chr9:131115694 3'AG 131115694 Downstream 80bp
chr9 131115773 131115773 1 + T C LAML 131115771 + 131115751 131115791 41 GTACGTGTCAACGAGGACACCATGGAGCTGATCCGGGGGCC GTACGTGTCAACGAGGACACCACGGAGCTGATCCGGGGGCC < 41bp 0.598709739337446 0.818460505472233 0.16932628 0.4267643 prediction 0.439501532269575 Functional Gain - SLC27A4 ENSG00000167114 CDS Human protein_coding chr9:131115771 chr9:131115773 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_119781 0 0 1 0 2 SLC27A4 chr9:131115820 5'GT 131115820 Upstream 48bp
chr16 87677940 87677940 1 + C T STAD 87677939 + 87677919 87677959 41 GAGCGTCCCGTATGGCATGGCCGCGGTCATCCGCTCACCCC GAGCGTCCCGTATGGCATGGCTGCGGTCATCCGCTCACCCC < 41bp 0.567811045764185 0.787559625014767 0.11631781 0.081685126 prediction 0.439497158501164 Functional Gain - JPH3 ENSG00000154118 CDS Human protein_coding chr16:87677939 chr16:87677940 synonymous SNV . 0 22 hm5C_associated_SNPs_119782 0 0 0 0 1 JPH3 chr16:87677864 3'AG 87677864 Downstream 77bp
chr2 208425875 208425875 1 + C A HNSC 208425874 + 208425854 208425894 41 GGACTTAAAAAGACTTTTCTCCGGAACACAGGTGAGTCCTA GGACTTAAAAAGACTTTTCTCAGGAACACAGGTGAGTCCTA < 41bp 0.471027078705096 0.719747582568205 0.5175705 0.907892 prediction 0.43949516513641 Functional Gain - CREB1 ENSG00000118260 CDS Human protein_coding chr2:208425874 chr2:208425875 synonymous SNV . 0 22 hm5C_associated_SNPs_119783 0 0 1 2 2 CREB1 chr2:208425843 3'AG 208425843 Downstream 33bp
chr2 208425875 208425875 1 + C A HNSC 208425874 + 208425854 208425894 41 GGACTTAAAAAGACTTTTCTCCGGAACACAGGTGAGTCCTA GGACTTAAAAAGACTTTTCTCAGGAACACAGGTGAGTCCTA < 41bp 0.471027078705096 0.719747582568205 0.5175705 0.907892 prediction 0.43949516513641 Functional Gain - CREB1 ENSG00000118260 CDS Human protein_coding chr2:208425874 chr2:208425875 synonymous SNV . 0 22 hm5C_associated_SNPs_119783 0 0 1 2 2 CREB1 chr2:208425884 5'GT 208425884 Upstream 10bp
chr11 57136893 57136893 1 + A G LIHC 57136890 + 57136870 57136910 41 CTCAAGGGGGCCGACCAGTACAAAGCCAAGAAGTTTGAGGA CTCAAGGGGGCCGACCAGTACAAGGCCAAGAAGTTTGAGGA < 41bp 0.474422712456632 0.719745424692377 0.21657467 0.5031333 prediction 0.439490849384754 Functional Gain - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57136890 chr11:57136893 synonymous SNV . 0 24 hm5C_associated_SNPs_119788 0 0 0 0 2 P2RX3 chr11:57136834 3'AG 57136834 Downstream 60bp
chr11 57136893 57136893 1 + A G LIHC 57136890 + 57136870 57136910 41 CTCAAGGGGGCCGACCAGTACAAAGCCAAGAAGTTTGAGGA CTCAAGGGGGCCGACCAGTACAAGGCCAAGAAGTTTGAGGA < 41bp 0.474422712456632 0.719745424692377 0.21657467 0.5031333 prediction 0.439490849384754 Functional Gain - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57136890 chr11:57136893 synonymous SNV . 0 24 hm5C_associated_SNPs_119788 0 0 0 0 2 P2RX3 chr11:57136911 5'GT 57136911 Upstream 19bp
chr20 61869965 61869965 1 + C T SKCM 61869964 + 61869944 61869984 41 CGCAGCCCCTGTGGCCCCCTCCGGTGAGAGCTGACACCACC CGCAGCCCCTGTGGCCCCCTCTGGTGAGAGCTGACACCACC < 41bp 0.547763550639341 0.767500542154216 0.85751843 0.486405 prediction 0.43947398302975 Functional Gain - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61869964 chr20:61869965 synonymous SNV . 0 22 hm5C_associated_SNPs_119790 0 0 0 0 2 BIRC7 chr20:61869921 3'AG 61869921 Downstream 45bp
chr20 61869965 61869965 1 + C T SKCM 61869964 + 61869944 61869984 41 CGCAGCCCCTGTGGCCCCCTCCGGTGAGAGCTGACACCACC CGCAGCCCCTGTGGCCCCCTCTGGTGAGAGCTGACACCACC < 41bp 0.547763550639341 0.767500542154216 0.85751843 0.486405 prediction 0.43947398302975 Functional Gain - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61869964 chr20:61869965 synonymous SNV . 0 22 hm5C_associated_SNPs_119790 0 0 0 0 2 BIRC7 chr20:61869966 5'GT 61869966 Upstream 2bp
chrX 24227043 24227043 1 + C T COAD 24227042 + 24227022 24227062 41 AATTCTGATGGAATTGAAAACCGGAATGGCACTGCAAGTGC AATTCTGATGGAATTGAAAACTGGAATGGCACTGCAAGTGC < 41bp 0.57494251575128 0.79467942612043 0.37330878 0.30765074 prediction 0.4394738207383 Functional Gain - ZFX ENSG00000005889 CDS Human protein_coding chrX:24227042 chrX:24227043 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_119791 0 0 0 0 1 ZFX chrX:24227017 3'AG 24227017 Downstream 27bp
chr15 67768126 67768126 1 + T C LIHC 67768123 + 67768103 67768143 41 CACTATGTTTTTCTCCAGATCTGTAGGGCCCATGGCATTGG CACTATGTTTTTCTCCAGATCTGCAGGGCCCATGGCATTGG < 41bp 0.487714323003182 0.719736464476305 0.18664685 0.22926342 prediction 0.43947292895261 Functional Gain - IQCH ENSG00000103599 CDS Human protein_coding chr15:67768123 chr15:67768126 synonymous SNV . 0 24 hm5C_associated_SNPs_119792 0 0 0 0 2 IQCH chr15:67768034 3'AG 67768034 Downstream 93bp
chr15 67768126 67768126 1 + T C LIHC 67768123 + 67768103 67768143 41 CACTATGTTTTTCTCCAGATCTGTAGGGCCCATGGCATTGG CACTATGTTTTTCTCCAGATCTGCAGGGCCCATGGCATTGG < 41bp 0.487714323003182 0.719736464476305 0.18664685 0.22926342 prediction 0.43947292895261 Functional Gain - IQCH ENSG00000103599 CDS Human protein_coding chr15:67768123 chr15:67768126 synonymous SNV . 0 24 hm5C_associated_SNPs_119792 0 0 0 0 2 IQCH chr15:67768156 5'GT 67768156 Upstream 31bp
chr8 29952946 29952946 1 + C A rs143899166 29952945 + 29952925 29952965 41 CACTTCCGGGTGTTGTCTGGCCGCCGTAGCGCGTCTTGGGT CACTTCCGGGTGTTGTCTGGCAGCCGTAGCGCGTCTTGGGT < 41bp 0.487200086318817 0.719734525692748 0.57766294 0.8185332 prediction 0.439469051385497 Functional Gain - LEPROTL1 ENSG00000104660 UTR5 Human protein_coding chr8:29952945 chr8:29952946 . . 0 22 hm5C_associated_SNPs_119794 0 0 1 0 1 LEPROTL1 chr8:29953044 5'GT 29953044 Upstream 99bp
chr14 70477552 70477552 1 + C A LUAD 70477551 + 70477531 70477571 41 CCCGTGAGGGTATTGTCATCCCTGAATGTGCCCCTGGGGGA CCCGTGAGGGTATTGTCATCCATGAATGTGCCCCTGGGGGA < 41bp 0.610974358656849 0.830706930673534 0.06286475 0.13954124 prediction 0.439465144033371 Functional Gain - SMOC1 ENSG00000198732 CDS Human protein_coding chr14:70477551 chr14:70477552 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_119796 0 0 1 0 1 SMOC1 chr14:70477471 3'AG 70477471 Downstream 82bp
chr11 68355413 68355413 1 + A G KIRC 68355410 + 68355390 68355430 41 GCCAGGCCTTTTCTGATTATCAGATGCAACAAATGACGTCC GCCAGGCCTTTTCTGATTATCAGGTGCAACAAATGACGTCC < 41bp 0.521319503876913 0.741051565946463 0.9196627 0.9336624 prediction 0.4394641241391 Functional Gain - PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68355410 chr11:68355413 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_119797 0 0 0 0 3 PPP6R3 chr11:68355395 3'AG 68355395 Downstream 19bp
chr11 68355413 68355413 1 + A G KIRC 68355410 + 68355390 68355430 41 GCCAGGCCTTTTCTGATTATCAGATGCAACAAATGACGTCC GCCAGGCCTTTTCTGATTATCAGGTGCAACAAATGACGTCC < 41bp 0.521319503876913 0.741051565946463 0.9196627 0.9336624 prediction 0.4394641241391 Functional Gain - PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68355410 chr11:68355413 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_119797 0 0 0 0 3 PPP6R3 chr11:68355413 3'AG 68355413 Downstream 1bp
chr11 68355413 68355413 1 + A G KIRC 68355410 + 68355390 68355430 41 GCCAGGCCTTTTCTGATTATCAGATGCAACAAATGACGTCC GCCAGGCCTTTTCTGATTATCAGGTGCAACAAATGACGTCC < 41bp 0.521319503876913 0.741051565946463 0.9196627 0.9336624 prediction 0.4394641241391 Functional Gain - PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68355410 chr11:68355413 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_119797 0 0 0 0 3 PPP6R3 chr11:68355492 5'GT 68355492 Upstream 80bp
chr10 102586787 102586787 1 + C T UCEC 102586786 + 102586766 102586806 41 GGAGCGAGTTCTCCGGCAACCCGTACAGCCACCCCCAGTAC GGAGCGAGTTCTCCGGCAACCTGTACAGCCACCCCCAGTAC < 41bp 0.466634413407365 0.719727478643574 0.08243123 0.11825752 prediction 0.439454957287147 Functional Gain - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102586786 chr10:102586787 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_119800 0 0 0 0 2 PAX2 chr10:102586766 3'AG 102586766 Downstream 22bp
chr10 102586787 102586787 1 + C T UCEC 102586786 + 102586766 102586806 41 GGAGCGAGTTCTCCGGCAACCCGTACAGCCACCCCCAGTAC GGAGCGAGTTCTCCGGCAACCTGTACAGCCACCCCCAGTAC < 41bp 0.466634413407365 0.719727478643574 0.08243123 0.11825752 prediction 0.439454957287147 Functional Gain - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102586786 chr10:102586787 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_119800 0 0 0 0 2 PAX2 chr10:102586852 5'GT 102586852 Upstream 66bp
chr11 71806473 71806473 1 + T G rs148344989 71806470 + 71806450 71806490 41 CGTATCACCACGTTCGACTTCAGTGGGGTCACCAAAGCAGA CGTATCACCACGTTCGACTTCAGGGGGGTCACCAAAGCAGA < 41bp 0.322470704091159 0.719724297412002 0.3442142 0.9226842 prediction 0.439448594824004 Functional Gain - LRTOMT ENSG00000184154 CDS Human protein_coding chr11:71806470 chr11:71806473 nonsynonymous SNV 0.991 3 24 hm5C_associated_SNPs_119802 0 0 0 1 1 LRTOMT chr11:71806425 3'AG 71806425 Downstream 49bp
chr1 63269499 63269499 1 + C G BLCA 63269498 + 63269478 63269518 41 TGAAGTTGACAAGCTAAAAACCAAATTTATATCTGCTTGGA TGAAGTTGACAAGCTAAAAACGAAATTTATATCTGCTTGGA < 41bp 0.427769375303546 0.719721697430515 0.26850033 0.4698767 prediction 0.43944339486103 Functional Gain - ATG4C ENSG00000125703 CDS Human protein_coding chr1:63269498 chr1:63269499 synonymous SNV . 0 22 hm5C_associated_SNPs_119803 0 0 1 0 1 ATG4C chr1:63269533 5'GT 63269533 Upstream 35bp
chr1 54427716 54427716 1 + A G GBM 54427713 + 54427693 54427733 41 TTTTTGACATCTAGGTAACCCTGAGATCACAGATGCAGGCA TTTTTGACATCTAGGTAACCCTGGGATCACAGATGCAGGCA < 41bp 0.51964383351645 0.739365320085338 0.057569563 0.36171544 prediction 0.439442973137776 Functional Gain - LRRC42 ENSG00000116212 CDS Human protein_coding chr1:54427713 chr1:54427716 nonsynonymous SNV 0.993 0 24 hm5C_associated_SNPs_119804 0 0 0 0 2 LRRC42 chr1:54427707 3'AG 54427707 Downstream 10bp
chr1 54427716 54427716 1 + A G GBM 54427713 + 54427693 54427733 41 TTTTTGACATCTAGGTAACCCTGAGATCACAGATGCAGGCA TTTTTGACATCTAGGTAACCCTGGGATCACAGATGCAGGCA < 41bp 0.51964383351645 0.739365320085338 0.057569563 0.36171544 prediction 0.439442973137776 Functional Gain - LRRC42 ENSG00000116212 CDS Human protein_coding chr1:54427713 chr1:54427716 nonsynonymous SNV 0.993 0 24 hm5C_associated_SNPs_119804 0 0 0 0 2 LRRC42 chr1:54427795 5'GT 54427795 Upstream 80bp
chr3 148871405 148871405 1 + C T SARC 148871404 + 148871384 148871424 41 AAGCAGAACCTGAAGCCATTCCAGAGAGAAGACAGTCACCC AAGCAGAACCTGAAGCCATTCTAGAGAGAAGACAGTCACCC < 41bp 0.614201446325486 0.833920502392501 0.2092075 0.08340642 prediction 0.439438112134031 Functional Gain - HPS3 ENSG00000163755 CDS Human protein_coding chr3:148871404 chr3:148871405 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_119807 0 0 1 0 1 HPS3 chr3:148871435 5'GT 148871435 Upstream 31bp
chr19 17000413 17000413 1 + C T SKCM 17000412 + 17000392 17000432 41 CCCTCAATCCTGCCTGCCCCCCGCGGCTACCCAGGCCAAGT CCCTCAATCCTGCCTGCCCCCTGCGGCTACCCAGGCCAAGT < 41bp 0.514025016798558 0.733744032847163 0.09304243 0.048431993 prediction 0.439438032097209 Functional Gain - F2RL3 ENSG00000127533 CDS Human protein_coding chr19:17000412 chr19:17000413 nonsynonymous SNV 0.001 3 22 hm5C_associated_SNPs_119808 0 0 0 0 1 F2RL3 chr19:17000384 3'AG 17000384 Downstream 30bp
chr8 7752280 7752280 1 + A G UCEC 7752277 + 7752257 7752297 41 TCTCGTTCCTCTTCATATTCCTGATGCCTCTTCCAGGTGAG TCTCGTTCCTCTTCATATTCCTGGTGCCTCTTCCAGGTGAG < 41bp 0.473731604978637 0.71971144158916 0.07446036 0.32645124 prediction 0.439422883178321 Functional Gain - DEFB4A ENSG00000171711 CDS Human protein_coding chr8:7752277 chr8:7752280 nonsynonymous SNV 0.056 0 24 hm5C_associated_SNPs_119811 0 0 0 0 1 DEFB4A chr8:7752292 5'GT 7752292 Upstream 13bp
chr16 227341 227341 1 + T C LUSC 227339 + 227319 227359 41 ACCTCCCCGCCGAGTTCACCCCTGCGGTGCACGCCTCCCTG ACCTCCCCGCCGAGTTCACCCCCGCGGTGCACGCCTCCCTG < 41bp 0.473126013304139 0.719706078357951 0.13834578 0.16607174 prediction 0.439412156715902 Functional Gain - HBA1 ENSG00000206172 CDS Human protein_coding chr16:227339 chr16:227341 synonymous SNV . 0 23 hm5C_associated_SNPs_119813 0 0 0 0 1 HBA1 chr16:227282 3'AG 227282 Downstream 60bp
chr21 44152021 44152021 1 + C T COAD 44152020 + 44152000 44152040 41 TAGAGCCCAGGCCCAGAGAGCCCCAGGGCTGCTACCAGGAA TAGAGCCCAGGCCCAGAGAGCTCCAGGGCTGCTACCAGGAA < 41bp 0.549127775234654 0.768826394450221 0.18818939 0.38830915 prediction 0.439397238431133 Functional Gain - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44152020 chr21:44152021 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_119816 0 0 0 0 1 PDE9A chr21:44152059 5'GT 44152059 Upstream 39bp
chr8 121259902 121259902 1 + C T rs115276090 121259901 + 121259881 121259921 41 GTGTCCGAGGAATGGTATAACCGGTTGCGCATTACGTGGGA GTGTCCGAGGAATGGTATAACTGGTTGCGCATTACGTGGGA < 41bp 0.475836364347662 0.719696831291746 0.14683494 0.19891524 prediction 0.439393662583492 Functional Gain - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259901 chr8:121259902 nonsynonymous SNV 0.968 4 22 hm5C_associated_SNPs_119817 0 0 0 0 2 COL14A1 chr8:121259852 3'AG 121259852 Downstream 51bp
chr8 121259902 121259902 1 + C T rs115276090 121259901 + 121259881 121259921 41 GTGTCCGAGGAATGGTATAACCGGTTGCGCATTACGTGGGA GTGTCCGAGGAATGGTATAACTGGTTGCGCATTACGTGGGA < 41bp 0.475836364347662 0.719696831291746 0.14683494 0.19891524 prediction 0.439393662583492 Functional Gain - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259901 chr8:121259902 nonsynonymous SNV 0.968 4 22 hm5C_associated_SNPs_119817 0 0 0 0 2 COL14A1 chr8:121259974 5'GT 121259974 Upstream 73bp
chr10 71648085 71648085 1 + C T UCEC 71648084 + 71648064 71648104 41 CCATTGGGCTGGACGGCAAACCGGTAAGTGGACCCGCTCTC CCATTGGGCTGGACGGCAAACTGGTAAGTGGACCCGCTCTC < 41bp 0.515394656158675 0.735089133359473 0.8290862 0.86748576 prediction 0.439388954401597 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71648084 chr10:71648085 nonsynonymous SNV 0.981 5 22 hm5C_associated_SNPs_119818 0 0 0 0 1 COL13A1 chr10:71648086 5'GT 71648086 Upstream 2bp
chr13 88328530 88328530 1 + C T LUAD 88328529 + 88328509 88328549 41 TTTCTGACTACGAGATGAGGCCGCAGACGCCTTTGAGCACC TTTCTGACTACGAGATGAGGCTGCAGACGCCTTTGAGCACC < 41bp 0.575808453112246 0.795500674303328 0.39093208 0.49124938 prediction 0.439384442382164 Functional Gain - SLITRK5 ENSG00000165300 CDS Human protein_coding chr13:88328529 chr13:88328530 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_119819 0 0 1 0 1 SLITRK5 chr13:88328462 3'AG 88328462 Downstream 69bp
chr17 1782957 1782957 1 + C A rs2230930 1782956 + 1782936 1782976 41 TATCTACTTGATGGACACATCCGGGAAGGTGGTGACTGCTA TATCTACTTGATGGACACATCAGGGAAGGTGGTGACTGCTA < 41bp 0.617444699712347 0.837136104940453 0.30807698 0.7696141 prediction 0.439382810456212 Functional Gain - RPA1 ENSG00000132383 CDS Human protein_coding chr17:1782956 chr17:1782957 synonymous SNV . 0 22 hm5C_associated_SNPs_119820 0 0 1 0 1 RPA1 chr17:1782993 5'GT 1782993 Upstream 37bp
chr1 26570743 26570743 1 + C T CESC 26570742 + 26570722 26570762 41 CCCTTTCGGAGCCGCTTCAGCCGCTGTTCAAGTGTAGCCGA CCCTTTCGGAGCCGCTTCAGCTGCTGTTCAAGTGTAGCCGA < 41bp 0.466255917217259 0.719689715758803 0.8917115 0.38505685 prediction 0.439379431517606 Functional Gain - CEP85 ENSG00000130695 CDS Human protein_coding chr1:26570742 chr1:26570743 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_119821 0 0 1 0 1 CEP85 chr1:26570657 3'AG 26570657 Downstream 87bp
chr19 46026006 46026006 1 + C T rs201980485 46026005 + 46025985 46026025 41 GCCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCG GCCTCAGGGGGGCCCACAGCCTCCAAAGCTGAGAGTGGTCG < 41bp 0.629272669147692 0.848962125138044 0.20742533 0.9594412 prediction 0.439378911980704 Functional Gain - VASP ENSG00000125753 CDS Human protein_coding chr19:46026005 chr19:46026006 nonsynonymous SNV 0.119 0 22 hm5C_associated_SNPs_119822 0 0 1 0 3 VASP chr19:46025976 3'AG 46025976 Downstream 31bp
chr19 46026006 46026006 1 + C T rs201980485 46026005 + 46025985 46026025 41 GCCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCG GCCTCAGGGGGGCCCACAGCCTCCAAAGCTGAGAGTGGTCG < 41bp 0.629272669147692 0.848962125138044 0.20742533 0.9594412 prediction 0.439378911980704 Functional Gain - VASP ENSG00000125753 CDS Human protein_coding chr19:46026005 chr19:46026006 nonsynonymous SNV 0.119 0 22 hm5C_associated_SNPs_119822 0 0 1 0 3 VASP chr19:46025979 3'AG 46025979 Downstream 28bp
chr19 46026006 46026006 1 + C T rs201980485 46026005 + 46025985 46026025 41 GCCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCG GCCTCAGGGGGGCCCACAGCCTCCAAAGCTGAGAGTGGTCG < 41bp 0.629272669147692 0.848962125138044 0.20742533 0.9594412 prediction 0.439378911980704 Functional Gain - VASP ENSG00000125753 CDS Human protein_coding chr19:46026005 chr19:46026006 nonsynonymous SNV 0.119 0 22 hm5C_associated_SNPs_119822 0 0 1 0 3 VASP chr19:46026076 5'GT 46026076 Upstream 71bp
chr19 49990344 49990344 1 + A G rs531785269 49990341 + 49990321 49990361 41 AGGCAGGAGGATCCCTTGAGCCCAGGAAGTGGAGGCTGCGG AGGCAGGAGGATCCCTTGAGCCCGGGAAGTGGAGGCTGCGG < 41bp 0.53445228480241 0.754141392228333 0.069337845 0.20642006 prediction 0.439378214851846 Functional Gain - RPL13A;RPL13AP5;FLT3LG ENSG00000273189 ncRNA_exonic Human processed_transcript chr19:49990341 chr19:49990344 . . 0 24 hm5C_associated_SNPs_119823 0 0 0 0 1 RPL13A;RPL13AP5;FLT3LG chr19:49990274 3'AG 49990274 Downstream 71bp
chr9 5231699 5231699 1 + T A rs142630360 5231695 + 5231675 5231715 41 CCACCACCCCAGGAGGGTGGCTGCTGGAATCTGGACGTCCC CCACCACCCCAGGAGGGTGGCTGCAGGAATCTGGACGTCCC < 41bp 0.665849806855232 0.885536335111936 0.16252792 0.518701 prediction 0.43937305651341 Functional Gain - INSL4 ENSG00000120211 CDS Human protein_coding chr9:5231695 chr9:5231699 nonsynonymous SNV 0.017 1 25 hm5C_associated_SNPs_119824 0 0 0 0 1 INSL4 chr9:5231719 5'GT 5231719 Upstream 21bp
chr12 124094674 124094674 1 + T C rs138867340 124094672 + 124094652 124094692 41 TCCCGCCTGGAAAACTACTACATGGTAAGCGCCTGGGCTTG TCCCGCCTGGAAAACTACTACACGGTAAGCGCCTGGGCTTG < 41bp 0.616813047133468 0.836499391091961 0.5661942 0.52352005 prediction 0.439372687916985 Functional Gain - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124094672 chr12:124094674 nonsynonymous SNV 0.977 1 23 hm5C_associated_SNPs_119825 0 0 1 0 1 DDX55 chr12:124094675 5'GT 124094675 Upstream 2bp
chr1 47533331 47533331 1 + C T SKCM 47533330 + 47533310 47533350 41 CCTGCCCACTGGTTCTATGGCCACAAGGAGGTAAGAGGAGA CCTGCCCACTGGTTCTATGGCTACAAGGAGGTAAGAGGAGA < 41bp 0.480754171039559 0.719686180089806 0.331604 0.8312278 prediction 0.439372360179613 Functional Gain - CYP4Z1 ENSG00000186160 CDS Human protein_coding chr1:47533330 chr1:47533331 nonsynonymous SNV 0.014 3 22 hm5C_associated_SNPs_119826 0 0 0 0 1 CYP4Z1 chr1:47533339 5'GT 47533339 Upstream 9bp
chr11 111156421 111156421 1 + C T SKCM 111156420 + 111156400 111156440 41 TGCCTGACGGTCTCAGCCAGCCTGACCCTGTGTCTGCCGAT TGCCTGACGGTCTCAGCCAGCTTGACCCTGTGTCTGCCGAT < 41bp 0.483786070270251 0.719685201226326 0.08333138 0.054928154 prediction 0.439370402452652 Functional Gain - C11orf53 ENSG00000150750 CDS Human protein_coding chr11:111156420 chr11:111156421 nonsynonymous SNV 0.393 0 22 hm5C_associated_SNPs_119827 0 0 0 0 1 C11orf53 chr11:111156378 3'AG 111156378 Downstream 44bp
chr12 120884357 120884357 1 + A G LAML 120884354 + 120884334 120884374 41 CCAGGGCTTCACCTCCAAGGCGGATCCTCAGGTAAAGGCCA CCAGGGCTTCACCTCCAAGGCGGGTCCTCAGGTAAAGGCCA < 41bp 0.565155627871674 0.784835248373241 0.72045434 0.8819162 prediction 0.439359241003133 Functional Gain - GATC ENSG00000257218 CDS Human protein_coding chr12:120884354 chr12:120884357 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_119828 0 0 1 0 1 GATC chr12:120884364 5'GT 120884364 Upstream 8bp
chr11 46338965 46338965 1 + C T rs77924634 46338964 + 46338944 46338984 41 CTCCCTCGTGCCCTGCCTTCCCGAGTTCTCCTCCGGCTCCC CTCCCTCGTGCCCTGCCTTCCTGAGTTCTCCTCCGGCTCCC < 41bp 0.593772521955766 0.813445766193656 0.2568184 0.22035557 prediction 0.439346488475781 Functional Gain - CREB3L1 ENSG00000157613 CDS Human protein_coding chr11:46338964 chr11:46338965 synonymous SNV . 0 22 hm5C_associated_SNPs_119830 0 0 1 0 1 CREB3L1 chr11:46338912 3'AG 46338912 Downstream 54bp
chr2 201757042 201757042 1 + C A rs200336342 201757038 + 201757018 201757058 41 GAGAACAGAGTCGGTATCTACTCTCCTCATACAGCCTATGA GAGAACAGAGTCGGTATCTACTCTACTCATACAGCCTATGA < 41bp 0.299071443227952 0.719669934001192 0.43638736 0.8938559 prediction 0.439339868002384 Functional Gain - NIF3L1 ENSG00000196290 CDS Human protein_coding chr2:201757038 chr2:201757042 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_119832 0 0 1 0 1 NIF3L1 chr2:201757102 5'GT 201757102 Upstream 61bp
chr4 76489459 76489459 1 + C T SKCM 76489458 + 76489438 76489478 41 CCCAGCCCATCACAAAGACACCCAGGTGTCCCTTCCATTTT CCCAGCCCATCACAAAGACACTCAGGTGTCCCTTCCATTTT < 41bp 0.477064561552625 0.71966460166141 0.011276782 0.020739853 prediction 0.43932920332282 Functional Gain - C4orf26 ENSG00000174792 CDS Human protein_coding chr4:76489458 chr4:76489459 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_119835 0 0 0 0 1 C4orf26 chr4:76489462 5'GT 76489462 Upstream 4bp
chr7 155556590 155556590 1 + C T CESC 155556589 + 155556569 155556609 41 GAAGTGGGACCACAGCCTGCCCGCAAGGTGACGCTGACCAG GAAGTGGGACCACAGCCTGCCTGCAAGGTGACGCTGACCAG < 41bp 0.458313060240732 0.719663670941704 0.089634985 0.2191607 prediction 0.439327341883409 Functional Gain - RBM33 ENSG00000184863 CDS Human protein_coding chr7:155556589 chr7:155556590 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_119836 0 0 1 0 2 RBM33 chr7:155556503 3'AG 155556503 Downstream 88bp
chr7 155556590 155556590 1 + C T CESC 155556589 + 155556569 155556609 41 GAAGTGGGACCACAGCCTGCCCGCAAGGTGACGCTGACCAG GAAGTGGGACCACAGCCTGCCTGCAAGGTGACGCTGACCAG < 41bp 0.458313060240732 0.719663670941704 0.089634985 0.2191607 prediction 0.439327341883409 Functional Gain - RBM33 ENSG00000184863 CDS Human protein_coding chr7:155556589 chr7:155556590 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_119836 0 0 1 0 2 RBM33 chr7:155556506 3'AG 155556506 Downstream 85bp
chr17 27075086 27075086 1 + C G LUSC 27075082 + 27075062 27075102 41 GTCATTCCCTGCCCTAATCGCTGCCCCATGAAGCTGAGCCG GTCATTCCCTGCCCTAATCGCTGCGCCATGAAGCTGAGCCG < 41bp 0.419093603885216 0.719653281176447 0.121521294 0.29293218 prediction 0.439306562352893 Functional Gain - TRAF4 ENSG00000076604 CDS Human protein_coding chr17:27075082 chr17:27075086 nonsynonymous SNV 0.978 0 25 hm5C_associated_SNPs_119839 0 0 1 0 1 TRAF4 chr17:27075035 3'AG 27075035 Downstream 52bp
chr14 94712785 94712785 1 + T A LUSC 94712781 + 94712761 94712801 41 AATGGAGAACTCATGAGAAGCTACTTCAGAAATATGCCTGC AATGGAGAACTCATGAGAAGCTACATCAGAAATATGCCTGC < 41bp 0.370135843030508 0.719643584836525 0.20526543 0.26762295 prediction 0.43928716967305 Functional Gain - PPP4R4 ENSG00000119698 CDS Human protein_coding chr14:94712781 chr14:94712785 nonsynonymous SNV 0.819 2 25 hm5C_associated_SNPs_119843 0 0 1 0 2 PPP4R4 chr14:94712694 3'AG 94712694 Downstream 92bp
chr14 94712785 94712785 1 + T A LUSC 94712781 + 94712761 94712801 41 AATGGAGAACTCATGAGAAGCTACTTCAGAAATATGCCTGC AATGGAGAACTCATGAGAAGCTACATCAGAAATATGCCTGC < 41bp 0.370135843030508 0.719643584836525 0.20526543 0.26762295 prediction 0.43928716967305 Functional Gain - PPP4R4 ENSG00000119698 CDS Human protein_coding chr14:94712781 chr14:94712785 nonsynonymous SNV 0.819 2 25 hm5C_associated_SNPs_119843 0 0 1 0 2 PPP4R4 chr14:94712876 5'GT 94712876 Upstream 92bp
chr1 220928449 220928449 1 + C G LUAD 220928445 + 220928425 220928465 41 AGCAAGCAGCCTTCCTCAAACAAACTCCACAACTGCAGGTG AGCAAGCAGCCTTCCTCAAACAAAGTCCACAACTGCAGGTG < 41bp 0.42210069678985 0.719640253688078 0.14916965 0.60961133 prediction 0.439280507376157 Functional Gain - MARC2 ENSG00000117791 CDS Human protein_coding chr1:220928445 chr1:220928449 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_119844 0 0 1 0 1 MARC2 chr1:220928462 5'GT 220928462 Upstream 14bp
chr22 45128230 45128230 1 + C T COAD 45128229 + 45128209 45128249 41 GCGCTGGCCCGGGCCCATGCCCGTGTGCCCCCTGCCATCGT GCGCTGGCCCGGGCCCATGCCTGTGTGCCCCCTGCCATCGT < 41bp 0.473447144301011 0.719637696475603 0.110545635 0.029968023 prediction 0.439275392951206 Functional Gain - PRR5 ENSG00000186654;ENSG00000241484;ENSG00000248405 CDS Human other chr22:45128229 chr22:45128230 nonsynonymous SNV 0.210 3 22 hm5C_associated_SNPs_119845 0 0 1 0 2 PRR5 chr22:45128131 3'AG 45128131 Downstream 100bp
chr22 45128230 45128230 1 + C T COAD 45128229 + 45128209 45128249 41 GCGCTGGCCCGGGCCCATGCCCGTGTGCCCCCTGCCATCGT GCGCTGGCCCGGGCCCATGCCTGTGTGCCCCCTGCCATCGT < 41bp 0.473447144301011 0.719637696475603 0.110545635 0.029968023 prediction 0.439275392951206 Functional Gain - PRR5 ENSG00000186654;ENSG00000241484;ENSG00000248405 CDS Human other chr22:45128229 chr22:45128230 nonsynonymous SNV 0.210 3 22 hm5C_associated_SNPs_119845 0 0 1 0 2 PRR5 chr22:45128271 5'GT 45128271 Upstream 42bp
chr17 48741200 48741200 1 + T C rs140303181 48741198 + 48741178 48741218 41 GTGAAGTTTCGTACTGGGATCATGGGTGTCATCTACAGGAA GTGAAGTTTCGTACTGGGATCACGGGTGTCATCTACAGGAA < 41bp 0.45947601115922 0.719631541751885 0.640816 0.7228094 prediction 0.43926308350377 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48741198 chr17:48741200 nonsynonymous SNV 0.346 1 23 hm5C_associated_SNPs_119846 0 0 1 0 1 ABCC3 chr17:48741219 5'GT 48741219 Upstream 20bp
chr4 40058590 40058590 1 + C G rs530088457 40058589 + 40058569 40058609 41 AGGGCTGCGGACCTGCGGCGCCGCGTTGTGCGTTCGACGAC AGGGCTGCGGACCTGCGGCGCGGCGTTGTGCGTTCGACGAC < 41bp 0.628111726910902 0.847739360103522 0.13530374 0.5227243 prediction 0.43925526638524 Functional Gain - LOC344967 ENSG00000205794 ncRNA_exonic Human transcribed_processed_pseudogene chr4:40058589 chr4:40058590 . . 0 22 hm5C_associated_SNPs_119848 0 0 1 0 1 LOC344967 chr4:40058650 5'GT 40058650 Upstream 61bp
chr1 22927938 22927938 1 + C A LGG 22927934 + 22927914 22927954 41 TTCGCTGCGGGCGGATACTCCTCTCTGGGCATGGTGCTACG TTCGCTGCGGGCGGATACTCCTCTATGGGCATGGTGCTACG < 41bp 0.290910513163962 0.719625121424411 0.8410339 0.9522736 prediction 0.439250242848823 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22927934 chr1:22927938 nonsynonymous SNV 0.959 3 25 hm5C_associated_SNPs_119849 0 0 0 0 1 EPHA8 chr1:22927966 5'GT 22927966 Upstream 29bp
chr11 66314224 66314224 1 + C G rs150880895 66314223 + 66314203 66314243 41 CACCCCGGCGCCCCCGAGTCCCGCAGTTCCCGGCTTCAGGA CACCCCGGCGCCCCCGAGTCCGGCAGTTCCCGGCTTCAGGA < 41bp 0.652015025369241 0.871639925807338 0.29551423 0.84575033 prediction 0.439249800876194 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66314223 chr11:66314224 unknown . 0 22 hm5C_associated_SNPs_119850 0 0 0 0 1 ACTN3 chr11:66314257 5'GT 66314257 Upstream 34bp
chr6 6589046 6589046 1 + T G BRCA 6589044 + 6589024 6589064 41 TGGAGGCGGCGGTGGGAAAGCCTGGCCCACACACGTGGTCT TGGAGGCGGCGGTGGGAAAGCCGGGCCCACACACGTGGTCT < 41bp 0.697552218195447 0.917175739412853 0.66112757 0.91355175 prediction 0.439247042434811 Functional Gain - LY86 ENSG00000112799 CDS Human protein_coding chr6:6589044 chr6:6589046 nonsynonymous SNV 0.529 4 23 hm5C_associated_SNPs_119852 0 0 0 0 1 LY86 chr6:6589103 5'GT 6589103 Upstream 58bp
chr1 156028139 156028139 1 + C T SKCM 156028138 + 156028118 156028158 41 GTGCAGTACCTGGAGGAGCCCCTCACCCAAGTGGCGGCATC GTGCAGTACCTGGAGGAGCCCTTCACCCAAGTGGCGGCATC < 41bp 0.468329916579969 0.719621412671225 0.24792671 0.33614358 prediction 0.439242825342451 Functional Gain - LAMTOR2 ENSG00000116586 CDS Human protein_coding chr1:156028138 chr1:156028139 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_119853 0 0 1 0 1 LAMTOR2 chr1:156028106 3'AG 156028106 Downstream 34bp
chr16 57778356 57778356 1 + C T SKCM 57778355 + 57778335 57778375 41 GAGCGTCCGCCTCAACACCCCCGAGGAGCTCATCGTGGCCG GAGCGTCCGCCTCAACACCCCTGAGGAGCTCATCGTGGCCG < 41bp 0.475275326370339 0.719619963530784 0.16366589 0.21082872 prediction 0.439239927061569 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57778355 chr16:57778356 synonymous SNV . 0 22 hm5C_associated_SNPs_119854 0 0 0 0 2 KATNB1 chr16:57778306 3'AG 57778306 Downstream 51bp
chr16 57778356 57778356 1 + C T SKCM 57778355 + 57778335 57778375 41 GAGCGTCCGCCTCAACACCCCCGAGGAGCTCATCGTGGCCG GAGCGTCCGCCTCAACACCCCTGAGGAGCTCATCGTGGCCG < 41bp 0.475275326370339 0.719619963530784 0.16366589 0.21082872 prediction 0.439239927061569 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57778355 chr16:57778356 synonymous SNV . 0 22 hm5C_associated_SNPs_119854 0 0 0 0 2 KATNB1 chr16:57778423 5'GT 57778423 Upstream 68bp
chr15 45443352 45443352 1 + C A SARC 45443351 + 45443331 45443371 41 AGAGTGAGTGCCCGCTGTTCCCGCAGCGACATTGAGACTGA AGAGTGAGTGCCCGCTGTTCCAGCAGCGACATTGAGACTGA < 41bp 0.59854956735326 0.818155373034745 0.49087468 0.6209155 prediction 0.43921161136297 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45443351 chr15:45443352 nonsynonymous SNV 0.078 0 22 hm5C_associated_SNPs_119857 0 0 0 0 2 DUOX1 chr15:45443321 3'AG 45443321 Downstream 32bp
chr15 45443352 45443352 1 + C A SARC 45443351 + 45443331 45443371 41 AGAGTGAGTGCCCGCTGTTCCCGCAGCGACATTGAGACTGA AGAGTGAGTGCCCGCTGTTCCAGCAGCGACATTGAGACTGA < 41bp 0.59854956735326 0.818155373034745 0.49087468 0.6209155 prediction 0.43921161136297 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45443351 chr15:45443352 nonsynonymous SNV 0.078 0 22 hm5C_associated_SNPs_119857 0 0 0 0 2 DUOX1 chr15:45443446 5'GT 45443446 Upstream 95bp
chr19 58723003 58723003 1 + C T STAD 58723002 + 58722982 58723022 41 GCTGGGCCCGACACAGAGGACCGAGTACCGCGATGTGATGC GCTGGGCCCGACACAGAGGACTGAGTACCGCGATGTGATGC < 41bp 0.566100583126028 0.785704242216685 0.314489 0.27364466 prediction 0.439207318181315 Functional Gain - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58723002 chr19:58723003 synonymous SNV . 0 22 hm5C_associated_SNPs_119858 0 0 1 0 2 ZNF274 chr19:58722926 3'AG 58722926 Downstream 78bp
chr19 58723003 58723003 1 + C T STAD 58723002 + 58722982 58723022 41 GCTGGGCCCGACACAGAGGACCGAGTACCGCGATGTGATGC GCTGGGCCCGACACAGAGGACTGAGTACCGCGATGTGATGC < 41bp 0.566100583126028 0.785704242216685 0.314489 0.27364466 prediction 0.439207318181315 Functional Gain - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58723002 chr19:58723003 synonymous SNV . 0 22 hm5C_associated_SNPs_119858 0 0 1 0 2 ZNF274 chr19:58723052 5'GT 58723052 Upstream 50bp
chr6 117862184 117862184 1 + C T LUSC 117862183 + 117862163 117862203 41 CATCCCCTCGGAAGAAACATCCACAGGTAGAGCCGTGATTG CATCCCCTCGGAAGAAACATCTACAGGTAGAGCCGTGATTG < 41bp 0.454298125904836 0.719587400504038 0.06275618 0.17540944 prediction 0.439174801008076 Functional Gain - DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117862183 chr6:117862184 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_119863 0 0 1 0 1 DCBLD1 chr6:117862188 5'GT 117862188 Upstream 5bp
chrX 100087795 100087795 1 + C A LUAD 100087794 + 100087774 100087814 41 CCATGAGAGCCGAGGACCACCCCCACATGAACTGAGGGGAG CCATGAGAGCCGAGGACCACCACCACATGAACTGAGGGGAG < 41bp 0.601715837201141 0.821303158593821 0.31779435 0.20910111 prediction 0.43917464278536 Functional Gain - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100087794 chrX:100087795 synonymous SNV . 0 22 hm5C_associated_SNPs_119864 0 0 0 0 1 CSTF2 chrX:100087723 3'AG 100087723 Downstream 73bp
chr19 55054768 55054768 1 + A G LIHC 55054765 + 55054745 55054785 41 GGAGCCTGCAGCAGAAGAGACACAGGAGATCATATATGCCC GGAGCCTGCAGCAGAAGAGACACGGGAGATCATATATGCCC < 41bp 0.551892274068041 0.771473985064681 0.12861252 0.14873311 prediction 0.439163421993281 Functional Gain - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55054765 chr19:55054768 nonsynonymous SNV 0.010 0 24 hm5C_associated_SNPs_119868 0 0 0 0 1 KIR3DX1 chr19:55054746 3'AG 55054746 Downstream 23bp
chr6 160234646 160234646 1 + C T SKCM 160234645 + 160234625 160234665 41 GATTGTAGGAGATGAATTTCCCGAGGGTGTCGAATCTTTCG GATTGTAGGAGATGAATTTCCTGAGGGTGTCGAATCTTTCG < 41bp 0.526934666895085 0.746515719150839 0.87416935 0.33453363 prediction 0.439162104511509 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160234645 chr6:160234646 nonsynonymous SNV 0.579 0 22 hm5C_associated_SNPs_119869 0 0 1 0 2 PNLDC1 chr6:160234633 3'AG 160234633 Downstream 14bp
chr6 160234646 160234646 1 + C T SKCM 160234645 + 160234625 160234665 41 GATTGTAGGAGATGAATTTCCCGAGGGTGTCGAATCTTTCG GATTGTAGGAGATGAATTTCCTGAGGGTGTCGAATCTTTCG < 41bp 0.526934666895085 0.746515719150839 0.87416935 0.33453363 prediction 0.439162104511509 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160234645 chr6:160234646 nonsynonymous SNV 0.579 0 22 hm5C_associated_SNPs_119869 0 0 1 0 2 PNLDC1 chr6:160234688 5'GT 160234688 Upstream 43bp
chr2 1271267 1271267 1 + T C COAD 1271265 + 1271245 1271285 41 GGGAAGAGCCATGTTTTCAACGTGGAGCTTGGCAGCGAGCT GGGAAGAGCCATGTTTTCAACGCGGAGCTTGGCAGCGAGCT < 41bp 0.449425723423527 0.719577919301957 0.22065392 0.37400937 prediction 0.439155838603913 Functional Gain - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1271265 chr2:1271267 nonsynonymous SNV 0.360 4 23 hm5C_associated_SNPs_119873 0 0 0 0 1 SNTG2 chr2:1271343 5'GT 1271343 Upstream 77bp
chr17 26822711 26822711 1 + C T SKCM 26822710 + 26822690 26822730 41 GTGGCTGGGAAACAAGCTGACCCCACTGCAGAGTGTGCCAG GTGGCTGGGAAACAAGCTGACTCCACTGCAGAGTGTGCCAG < 41bp 0.619067981141027 0.838629172756676 0.046655923 0.8163196 prediction 0.439122383231299 Functional Gain - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26822710 chr17:26822711 synonymous SNV . 0 22 hm5C_associated_SNPs_119879 0 0 0 0 1 SLC13A2 chr17:26822673 3'AG 26822673 Downstream 39bp
chr17 18133304 18133304 1 + C T SKCM 18133303 + 18133283 18133323 41 CCAGCGCCCTGGCCTTCGACCCGGAACTTCGCATCATGGCC CCAGCGCCCTGGCCTTCGACCTGGAACTTCGCATCATGGCC < 41bp 0.590665933558428 0.810224784141623 0.3389954 0.2217206 prediction 0.43911770116639 Functional Gain - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18133303 chr17:18133304 nonsynonymous SNV 0.313 2 22 hm5C_associated_SNPs_119882 0 0 1 0 2 LLGL1 chr17:18133255 3'AG 18133255 Downstream 50bp
chr17 18133304 18133304 1 + C T SKCM 18133303 + 18133283 18133323 41 CCAGCGCCCTGGCCTTCGACCCGGAACTTCGCATCATGGCC CCAGCGCCCTGGCCTTCGACCTGGAACTTCGCATCATGGCC < 41bp 0.590665933558428 0.810224784141623 0.3389954 0.2217206 prediction 0.43911770116639 Functional Gain - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18133303 chr17:18133304 nonsynonymous SNV 0.313 2 22 hm5C_associated_SNPs_119882 0 0 1 0 2 LLGL1 chr17:18133352 5'GT 18133352 Upstream 49bp
chr1 22839532 22839532 1 + C T BLCA 22839531 + 22839511 22839551 41 GAACCACCTTCGCCTTCACACCGGGGACCGCCCGTTCATGT GAACCACCTTCGCCTTCACACTGGGGACCGCCCGTTCATGT < 41bp 0.464185310361269 0.71955711696691 0.67434824 0.32115775 prediction 0.43911423393382 Functional Gain - ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22839531 chr1:22839532 synonymous SNV . 0 22 hm5C_associated_SNPs_119883 0 0 1 0 1 ZBTB40 chr1:22839623 5'GT 22839623 Upstream 92bp
chr14 103576444 103576444 1 + C A rs744153 103576440 + 103576420 103576460 41 AACCAGCATCTCTTGCAGCACACTCAAGACCTGCTGAGAGC AACCAGCATCTCTTGCAGCACACTAAAGACCTGCTGAGAGC < 41bp 0.329248648005538 0.719556791852355 0.053043306 0.09448382 prediction 0.43911358370471 Functional Gain - EXOC3L4 ENSG00000205436 CDS Human protein_coding chr14:103576440 chr14:103576444 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_119884 0 0 0 0 1 EXOC3L4 chr14:103576368 3'AG 103576368 Downstream 77bp
chr13 50202715 50202715 1 + C G rs180827903 50202711 + 50202691 50202731 41 GCTCCATAGGGGAGGAGAGCCACGCAGGATCTCACAGCTGC GCTCCATAGGGGAGGAGAGCCACGGAGGATCTCACAGCTGC < 41bp 0.520255141845295 0.739807594557666 0.080142856 0.89077353 prediction 0.439104905424742 Functional Gain - ARL11 ENSG00000152213 UTR5 Human protein_coding chr13:50202711 chr13:50202715 . . 0 25 hm5C_associated_SNPs_119886 0 0 0 0 1 ARL11 chr13:50202751 5'GT 50202751 Upstream 37bp
chr2 234869684 234869684 1 + C T READ 234869683 + 234869663 234869703 41 CGGAAGGAAGACAGAAATGGCCGGGACGAGATGGACATAGA CGGAAGGAAGACAGAAATGGCTGGGACGAGATGGACATAGA < 41bp 0.477008836253264 0.719550447957366 0.5188483 0.4299531 prediction 0.439100895914732 Functional Gain - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234869683 chr2:234869684 nonsynonymous SNV 0.538 2 22 hm5C_associated_SNPs_119887 0 0 0 0 1 TRPM8 chr2:234869710 5'GT 234869710 Upstream 27bp
chr17 35300123 35300123 1 + C T SKCM 35300122 + 35300102 35300142 41 GGCCCCCCGTCCTCGCAGGCCCAGACACCAGTGGACCTACC GGCCCCCCGTCCTCGCAGGCCTAGACACCAGTGGACCTACC < 41bp 0.471073411887881 0.719547525371977 0.06772721 0.06779498 prediction 0.439095050743955 Functional Gain - LHX1 ENSG00000132130 CDS Human other chr17:35300122 chr17:35300123 stopgain 0.997 1 22 hm5C_associated_SNPs_119890 0 0 0 0 1 LHX1 chr17:35300049 3'AG 35300049 Downstream 75bp
chr12 2912358 2912358 1 + A G UCEC 2912355 + 2912335 2912375 41 TCAGGAGACCATCCCACTGACACAGAGATGAAGGAGGAGCA TCAGGAGACCATCCCACTGACACGGAGATGAAGGAGGAGCA < 41bp 0.558407000925608 0.777951615778072 0.16244066 0.15693936 prediction 0.439089229704928 Functional Gain - FKBP4 ENSG00000004478 CDS Human protein_coding chr12:2912355 chr12:2912358 synonymous SNV . 0 24 hm5C_associated_SNPs_119892 0 0 1 0 1 FKBP4 chr12:2912317 3'AG 2912317 Downstream 42bp
chr16 77859228 77859228 1 + C T UCS 77859227 + 77859207 77859247 41 TGGAGTTTGTCTACAAGATCCCGGATGACATGAGCTTCTCC TGGAGTTTGTCTACAAGATCCTGGATGACATGAGCTTCTCC < 41bp 0.600970148537503 0.820512909964984 0.3425883 0.52402586 prediction 0.439085522854962 Functional Gain - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77859227 chr16:77859228 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_119893 0 0 0 0 1 VAT1L chr16:77859143 3'AG 77859143 Downstream 86bp
chr9 133932442 133932442 1 + C T ESCA 133932441 + 133932421 133932461 41 AGTTCTGTGAATCCTGTGCTCCGGGATACAAGAGGGAGATG AGTTCTGTGAATCCTGTGCTCTGGGATACAAGAGGGAGATG < 41bp 0.549673638544076 0.769204033091841 0.8907293 0.7385221 prediction 0.43906078909553 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133932441 chr9:133932442 nonsynonymous SNV 0.980 0 22 hm5C_associated_SNPs_119895 1 0 0 0 1 LAMC3 chr9:133932534 5'GT 133932534 Upstream 93bp
chr1 16332499 16332499 1 + C T rs7520406 16332498 + 16332478 16332518 41 CACCCACGGGAAGCAGCTCTCCCTGGCAGCAACCGCATCAC CACCCACGGGAAGCAGCTCTCTCTGGCAGCAACCGCATCAC < 41bp 0.575262891152228 0.794788953878737 0.023726195 0.11926919 prediction 0.439052125453018 Functional Gain - C1orf64 ENSG00000183888 CDS Human protein_coding chr1:16332498 chr1:16332499 synonymous SNV . 0 22 hm5C_associated_SNPs_119897 0 0 0 0 1 C1orf64 chr1:16332414 3'AG 16332414 Downstream 86bp
chr1 160094101 160094101 1 + C T UCEC 160094100 + 160094080 160094120 41 CCACAGCAAGCCCTTGTGATCCGGGAGGGAGAGAAGATGCA CCACAGCAAGCCCTTGTGATCTGGGAGGGAGAGAAGATGCA < 41bp 0.471957274012819 0.719515296258259 0.64391524 0.14486158 prediction 0.439030592516519 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160094100 chr1:160094101 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_119899 0 0 0 0 1 ATP1A2 chr1:160094086 3'AG 160094086 Downstream 16bp
chr3 113342500 113342500 1 + C T LUSC 113342499 + 113342479 113342519 41 TCTGAAAAGGTCCTCCCAGTCCCGCTCTTCTGCATCGTGGC TCTGAAAAGGTCCTCCCAGTCTCGCTCTTCTGCATCGTGGC < 41bp 0.465345924270697 0.719513687402747 0.07577318 0.14260584 prediction 0.439027374805494 Functional Gain - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113342499 chr3:113342500 nonsynonymous SNV 0.089 1 22 hm5C_associated_SNPs_119903 0 0 0 0 2 SIDT1 chr3:113342470 3'AG 113342470 Downstream 31bp
chr3 113342500 113342500 1 + C T LUSC 113342499 + 113342479 113342519 41 TCTGAAAAGGTCCTCCCAGTCCCGCTCTTCTGCATCGTGGC TCTGAAAAGGTCCTCCCAGTCTCGCTCTTCTGCATCGTGGC < 41bp 0.465345924270697 0.719513687402747 0.07577318 0.14260584 prediction 0.439027374805494 Functional Gain - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113342499 chr3:113342500 nonsynonymous SNV 0.089 1 22 hm5C_associated_SNPs_119903 0 0 0 0 2 SIDT1 chr3:113342580 5'GT 113342580 Upstream 81bp
chr13 51921337 51921337 1 + C A rs200319209 51921336 + 51921316 51921356 41 TATGGCCTCGTCCTTCAGGTCCCCATGATGCACCAAACGAC TATGGCCTCGTCCTTCAGGTCACCATGATGCACCAAACGAC < 41bp 0.604150907889394 0.823660037080561 0.04079196 0.021414697 prediction 0.439018258382336 Functional Gain - SERPINE3 ENSG00000253309 CDS Human protein_coding chr13:51921336 chr13:51921337 nonsynonymous SNV 0.800 4 22 hm5C_associated_SNPs_119907 0 0 0 0 1 SERPINE3 chr13:51921370 5'GT 51921370 Upstream 34bp
chr10 90438284 90438284 1 + C A LUSC 90438283 + 90438263 90438303 41 GCAAGGACCTGTTGGCTGACCCCCAAGATGTTGGCCTTTTG GCAAGGACCTGTTGGCTGACCACCAAGATGTTGGCCTTTTG < 41bp 0.592594341523279 0.812100623950912 0.022336274 0.13164032 prediction 0.439012564855266 Functional Gain - LIPF ENSG00000182333 CDS Human protein_coding chr10:90438283 chr10:90438284 nonsynonymous SNV 0.096 4 22 hm5C_associated_SNPs_119908 0 0 0 0 1 LIPF chr10:90438202 3'AG 90438202 Downstream 83bp
chr7 70800596 70800596 1 + C T LGG 70800595 + 70800575 70800615 41 GGCGGGGTAAAGGGGGCCTTCCGGCTACTCTTTCCCCGGCT GGCGGGGTAAAGGGGGCCTTCTGGCTACTCTTTCCCCGGCT < 41bp 0.519619327457872 0.739124900021637 0.9088832 0.8938835 prediction 0.43901114512753 Functional Gain - GALNT17 ENSG00000185274 CDS Human protein_coding chr7:70800595 chr7:70800596 nonsynonymous SNV 0.979 1 22 hm5C_associated_SNPs_119909 0 0 0 0 1 GALNT17 chr7:70800536 3'AG 70800536 Downstream 61bp
chr8 56866481 56866481 1 + C A HNSC 56866480 + 56866460 56866500 41 ATAAAGATGCCTGGGAGATCCCCCGGGAGTCCATCAAGTTG ATAAAGATGCCTGGGAGATCCACCGGGAGTCCATCAAGTTG < 41bp 0.587414109444093 0.806915269494351 0.13500753 0.18500715 prediction 0.439002320100517 Functional Gain - LYN ENSG00000254087 CDS Human protein_coding chr8:56866480 chr8:56866481 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_119910 0 0 1 0 2 LYN chr8:56866391 3'AG 56866391 Downstream 91bp
chr8 56866481 56866481 1 + C A HNSC 56866480 + 56866460 56866500 41 ATAAAGATGCCTGGGAGATCCCCCGGGAGTCCATCAAGTTG ATAAAGATGCCTGGGAGATCCACCGGGAGTCCATCAAGTTG < 41bp 0.587414109444093 0.806915269494351 0.13500753 0.18500715 prediction 0.439002320100517 Functional Gain - LYN ENSG00000254087 CDS Human protein_coding chr8:56866480 chr8:56866481 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_119910 0 0 1 0 2 LYN chr8:56866543 5'GT 56866543 Upstream 63bp
chr22 40759015 40759015 1 + C T CESC 40759014 + 40758994 40759034 41 TTTGGCCGAGGCATTTCTTACCGCAGATACTATATTGAATA TTTGGCCGAGGCATTTCTTACTGCAGATACTATATTGAATA < 41bp 0.611941682851153 0.83143993986799 0.62757325 0.38809168 prediction 0.438996514033675 Functional Gain - ADSL ENSG00000239900 CDS Human protein_coding chr22:40759014 chr22:40759015 synonymous SNV . 0 22 hm5C_associated_SNPs_119911 0 0 1 0 1 ADSL chr22:40758985 3'AG 40758985 Downstream 31bp
chr11 34988232 34988232 1 + C T STAD 34988231 + 34988211 34988251 41 GAAACAAACGGGCAAGATTACCGAGTCCAGACCAACTCCAG GAAACAAACGGGCAAGATTACTGAGTCCAGACCAACTCCAG < 41bp 0.565859797026308 0.785340348653223 0.58503824 0.379661 prediction 0.43896110325383 Functional Gain - PDHX ENSG00000110435 CDS Human protein_coding chr11:34988231 chr11:34988232 synonymous SNV . 0 22 hm5C_associated_SNPs_119913 0 0 1 0 1 PDHX chr11:34988187 3'AG 34988187 Downstream 46bp
chr12 32458691 32458691 1 + A G UCEC 32458688 + 32458668 32458708 41 TTGAGGAGGAGACGGTACTGCTGAACAGCCAGCTGGAAGAT TTGAGGAGGAGACGGTACTGCTGGACAGCCAGCTGGAAGAT < 41bp 0.562667443484132 0.782146325422217 0.41962513 0.7434969 prediction 0.43895776387617 Functional Gain - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32458688 chr12:32458691 nonsynonymous SNV 0.884 2 24 hm5C_associated_SNPs_119914 0 0 0 0 1 BICD1 chr12:32458631 3'AG 32458631 Downstream 61bp
chr8 19687981 19687981 1 + A G COAD 19687978 + 19687958 19687998 41 TCACATTGTAGTCAATAAAGCCGAACTTGCTAACTCCACTG TCACATTGTAGTCAATAAAGCCGGACTTGCTAACTCCACTG < 41bp 0.481673366172753 0.719472860832587 0.13663754 0.40221882 prediction 0.438945721665174 Functional Gain - INTS10 ENSG00000104613 CDS Human protein_coding chr8:19687978 chr8:19687981 nonsynonymous SNV 0.259 2 24 hm5C_associated_SNPs_119915 0 0 1 0 3 INTS10 chr8:19687914 3'AG 19687914 Downstream 68bp
chr8 19687981 19687981 1 + A G COAD 19687978 + 19687958 19687998 41 TCACATTGTAGTCAATAAAGCCGAACTTGCTAACTCCACTG TCACATTGTAGTCAATAAAGCCGGACTTGCTAACTCCACTG < 41bp 0.481673366172753 0.719472860832587 0.13663754 0.40221882 prediction 0.438945721665174 Functional Gain - INTS10 ENSG00000104613 CDS Human protein_coding chr8:19687978 chr8:19687981 nonsynonymous SNV 0.259 2 24 hm5C_associated_SNPs_119915 0 0 1 0 3 INTS10 chr8:19687917 3'AG 19687917 Downstream 65bp
chr8 19687981 19687981 1 + A G COAD 19687978 + 19687958 19687998 41 TCACATTGTAGTCAATAAAGCCGAACTTGCTAACTCCACTG TCACATTGTAGTCAATAAAGCCGGACTTGCTAACTCCACTG < 41bp 0.481673366172753 0.719472860832587 0.13663754 0.40221882 prediction 0.438945721665174 Functional Gain - INTS10 ENSG00000104613 CDS Human protein_coding chr8:19687978 chr8:19687981 nonsynonymous SNV 0.259 2 24 hm5C_associated_SNPs_119915 0 0 1 0 3 INTS10 chr8:19688070 5'GT 19688070 Upstream 90bp
chrX 595546 595546 1 + C G LUAD 595545 + 595525 595565 41 CAGCCAGCGCCTGGGGCTCTCCGAGGCGCGCGTGCAGGTAG CAGCCAGCGCCTGGGGCTCTCGGAGGCGCGCGTGCAGGTAG < 41bp 0.668332682256403 0.887802052539236 0.8634299 0.9299414 prediction 0.438938740565666 Functional Gain - SHOX ENSG00000185960 CDS Human protein_coding chrX:595545 chrX:595546 synonymous SNV . 0 22 hm5C_associated_SNPs_119917 0 0 0 0 1 SHOX chrX:595561 5'GT 595561 Upstream 16bp
chr11 85956300 85956300 1 + C G LUSC 85956299 + 85956279 85956319 41 AGAGGGAAGTGTCGACTGCGCCGGCGGGAACAGACATGCCT AGAGGGAAGTGTCGACTGCGCGGGCGGGAACAGACATGCCT < 41bp 0.656636831148788 0.876102881210422 0.53384453 0.6252757 prediction 0.438932100123268 Functional Gain - EED ENSG00000074266 CDS Human protein_coding chr11:85956299 chr11:85956300 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_119919 0 0 1 0 1 EED chr11:85956385 5'GT 85956385 Upstream 86bp
chr1 36039163 36039163 1 + C G rs376654065 36039162 + 36039142 36039182 41 GCCGCCGCCACGCCTCGCGCCCGGCACTCACCGCCCCATGC GCCGCCGCCACGCCTCGCGCCGGGCACTCACCGCCCCATGC < 41bp 0.503321262749204 0.722785999635208 0.4288212 0.90569896 prediction 0.438929473772008 Functional Gain - TFAP2E ENSG00000239636 ncRNA_intronic Human protein_coding chr1:36039162 chr1:36039163 . . 0 22 hm5C_associated_SNPs_119920 0 0 0 0 1 TFAP2E chr1:36039205 5'GT 36039205 Upstream 43bp
chr7 76027019 76027019 1 + A G UCEC 76027016 + 76026996 76027036 41 ATGGCCGCCCCGCAGCCCAGCTGACGACAGACCACAGCGGC ATGGCCGCCCCGCAGCCCAGCTGGCGACAGACCACAGCGGC < 41bp 0.570727947530791 0.790190859841855 0.17071798 0.39378038 prediction 0.438925824622129 Functional Gain - SSC4D ENSG00000146700 CDS Human protein_coding chr7:76027016 chr7:76027019 synonymous SNV . 0 24 hm5C_associated_SNPs_119922 0 0 1 0 1 SSC4D chr7:76027114 5'GT 76027114 Upstream 96bp
chr19 50386990 50386990 1 + C T UCEC 50386989 + 50386969 50387009 41 AACTCACTTCTGCATGGATACCGCAGCCTCATCGGTCAGTG AACTCACTTCTGCATGGATACTGCAGCCTCATCGGTCAGTG < 41bp 0.608409179599807 0.82786981981487 0.26543272 0.39831686 prediction 0.438921280430127 Functional Gain - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50386989 chr19:50386990 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_119923 0 0 1 3 2 TBC1D17 chr19:50386908 3'AG 50386908 Downstream 83bp
chr19 50386990 50386990 1 + C T UCEC 50386989 + 50386969 50387009 41 AACTCACTTCTGCATGGATACCGCAGCCTCATCGGTCAGTG AACTCACTTCTGCATGGATACTGCAGCCTCATCGGTCAGTG < 41bp 0.608409179599807 0.82786981981487 0.26543272 0.39831686 prediction 0.438921280430127 Functional Gain - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50386989 chr19:50386990 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_119923 0 0 1 3 2 TBC1D17 chr19:50387002 5'GT 50387002 Upstream 13bp
chr12 113425037 113425037 1 + T C GBM 113425035 + 113425015 113425055 41 ATTTCGAGATCCAGAAGTCCCTTGATGGGTTCACCATCCAG ATTTCGAGATCCAGAAGTCCCTCGATGGGTTCACCATCCAG < 41bp 0.631572614548253 0.851032412166221 0.18233153 0.89612263 prediction 0.438919595235936 Functional Gain - OAS2 ENSG00000111335 CDS Human protein_coding chr12:113425035 chr12:113425037 synonymous SNV . 0 23 hm5C_associated_SNPs_119924 0 0 0 0 1 OAS2 chr12:113425113 5'GT 113425113 Upstream 77bp
chr19 49447675 49447675 1 + C T UCEC 49447674 + 49447654 49447694 41 AGGGGGAGCATAAGGAGTTCCCGCTGCCCCCAGTCCCAAAG AGGGGGAGCATAAGGAGTTCCTGCTGCCCCCAGTCCCAAAG < 41bp 0.464195923009778 0.719453303082573 0.14573991 0.11508015 prediction 0.438906606165145 Functional Gain - DHDH ENSG00000104808 CDS Human protein_coding chr19:49447674 chr19:49447675 nonsynonymous SNV 0.385 0 22 hm5C_associated_SNPs_119925 0 0 0 0 1 DHDH chr19:49447614 3'AG 49447614 Downstream 62bp
chr13 77570129 77570129 1 + T G PRAD 77570126 + 77570106 77570146 41 GAACTTTTCCAACTTGGCAACTGTACATTTCCCCATCTCCG GAACTTTTCCAACTTGGCAACTGGACATTTCCCCATCTCCG < 41bp 0.324420775235007 0.719448498620972 0.04056722 0.08235061 prediction 0.438896997241945 Functional Gain - CLN5 ENSG00000102805 CDS Human protein_coding chr13:77570126 chr13:77570129 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_119926 0 0 1 0 1 CLN5 chr13:77570037 3'AG 77570037 Downstream 93bp
chr21 47531433 47531433 1 + C T UCEC 47531432 + 47531412 47531452 41 GTGCTCCTGCTCTGGGGAATCCTGGGGGCCATCCAGGCCCA GTGCTCCTGCTCTGGGGAATCTTGGGGGCCATCCAGGCCCA < 41bp 0.563975880770307 0.78342310184313 0.8627935 0.8899865 prediction 0.438894442145646 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47531432 chr21:47531433 synonymous SNV . 0 22 hm5C_associated_SNPs_119927 0 0 1 0 2 COL6A2 chr21:47531364 3'AG 47531364 Downstream 70bp
chr21 47531433 47531433 1 + C T UCEC 47531432 + 47531412 47531452 41 GTGCTCCTGCTCTGGGGAATCCTGGGGGCCATCCAGGCCCA GTGCTCCTGCTCTGGGGAATCTTGGGGGCCATCCAGGCCCA < 41bp 0.563975880770307 0.78342310184313 0.8627935 0.8899865 prediction 0.438894442145646 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47531432 chr21:47531433 synonymous SNV . 0 22 hm5C_associated_SNPs_119927 0 0 1 0 2 COL6A2 chr21:47531505 5'GT 47531505 Upstream 73bp
chr19 17627018 17627018 1 + C T LUSC 17627017 + 17626997 17627037 41 AGACTGCCGATCCCAGAAAGCCAGGTGATCACCATTAACCC AGACTGCCGATCCCAGAAAGCTAGGTGATCACCATTAACCC < 41bp 0.572349991731672 0.791794495768733 0.9381005 0.47665554 prediction 0.438889008074121 Functional Gain - PGLS ENSG00000130313 CDS Human protein_coding chr19:17627017 chr19:17627018 stopgain 0.918 1 22 hm5C_associated_SNPs_119930 0 0 0 0 2 PGLS chr19:17626982 3'AG 17626982 Downstream 37bp
chr19 17627018 17627018 1 + C T LUSC 17627017 + 17626997 17627037 41 AGACTGCCGATCCCAGAAAGCCAGGTGATCACCATTAACCC AGACTGCCGATCCCAGAAAGCTAGGTGATCACCATTAACCC < 41bp 0.572349991731672 0.791794495768733 0.9381005 0.47665554 prediction 0.438889008074121 Functional Gain - PGLS ENSG00000130313 CDS Human protein_coding chr19:17627017 chr19:17627018 stopgain 0.918 1 22 hm5C_associated_SNPs_119930 0 0 0 0 2 PGLS chr19:17627089 5'GT 17627089 Upstream 72bp
chr9 74817652 74817652 1 + A G UCS 74817649 + 74817629 74817669 41 TTTGCAGAAGAAGTATATACCAGAGTTGTCGTAAGTATCTT TTTGCAGAAGAAGTATATACCAGGGTTGTCGTAAGTATCTT < 41bp 0.530006269659469 0.749449182564152 0.5063175 0.8921659 prediction 0.438885825809365 Functional Gain - GDA ENSG00000119125 CDS Human protein_coding chr9:74817649 chr9:74817652 synonymous SNV . 0 24 hm5C_associated_SNPs_119931 0 0 1 0 1 GDA chr9:74817658 5'GT 74817658 Upstream 7bp
chr5 137423543 137423543 1 + T C rs369466608 137423541 + 137423521 137423561 41 GCTATCAGCTCTGCTGGAGTCATGTACATCATCACCAAGAA GCTATCAGCTCTGCTGGAGTCACGTACATCATCACCAAGAA < 41bp 0.430228909621708 0.719436562179754 0.23717123 0.22606614 prediction 0.438873124359508 Functional Gain - WNT8A ENSG00000061492 CDS Human protein_coding chr5:137423541 chr5:137423543 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_119934 0 0 0 0 2 WNT8A chr5:137423495 3'AG 137423495 Downstream 49bp
chr5 137423543 137423543 1 + T C rs369466608 137423541 + 137423521 137423561 41 GCTATCAGCTCTGCTGGAGTCATGTACATCATCACCAAGAA GCTATCAGCTCTGCTGGAGTCACGTACATCATCACCAAGAA < 41bp 0.430228909621708 0.719436562179754 0.23717123 0.22606614 prediction 0.438873124359508 Functional Gain - WNT8A ENSG00000061492 CDS Human protein_coding chr5:137423541 chr5:137423543 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_119934 0 0 0 0 2 WNT8A chr5:137423620 5'GT 137423620 Upstream 78bp
chr19 30312986 30312986 1 + T C UCEC 30312984 + 30312964 30313004 41 TTGCATATCTAAATGACTTACATGAAGTGCTACTGCCGCAG TTGCATATCTAAATGACTTACACGAAGTGCTACTGCCGCAG < 41bp 0.633854533521344 0.853289864684598 0.17318273 0.15397048 prediction 0.438870662326509 Functional Gain - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30312984 chr19:30312986 synonymous SNV . 0 23 hm5C_associated_SNPs_119935 0 0 1 0 2 CCNE1 chr19:30312903 3'AG 30312903 Downstream 84bp
chr19 30312986 30312986 1 + T C UCEC 30312984 + 30312964 30313004 41 TTGCATATCTAAATGACTTACATGAAGTGCTACTGCCGCAG TTGCATATCTAAATGACTTACACGAAGTGCTACTGCCGCAG < 41bp 0.633854533521344 0.853289864684598 0.17318273 0.15397048 prediction 0.438870662326509 Functional Gain - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30312984 chr19:30312986 synonymous SNV . 0 23 hm5C_associated_SNPs_119935 0 0 1 0 2 CCNE1 chr19:30313037 5'GT 30313037 Upstream 52bp
chr7 141800616 141800616 1 + T C UCEC 141800614 + 141800594 141800634 41 CACTGCAGCCGCCAGAAATTCATGGGCTTCAAAATTGCCTT CACTGCAGCCGCCAGAAATTCACGGGCTTCAAAATTGCCTT < 41bp 0.462829561144573 0.719428608590039 0.583837 0.85329354 prediction 0.438857217180078 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141800614 chr7:141800616 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_119936 0 0 0 0 2 MGAM chr7:141800602 3'AG 141800602 Downstream 15bp
chr7 141800616 141800616 1 + T C UCEC 141800614 + 141800594 141800634 41 CACTGCAGCCGCCAGAAATTCATGGGCTTCAAAATTGCCTT CACTGCAGCCGCCAGAAATTCACGGGCTTCAAAATTGCCTT < 41bp 0.462829561144573 0.719428608590039 0.583837 0.85329354 prediction 0.438857217180078 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141800614 chr7:141800616 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_119936 0 0 0 0 2 MGAM chr7:141800690 5'GT 141800690 Upstream 75bp
chr16 2564154 2564154 1 + T C COAD 2564152 + 2564132 2564172 41 TATGCTTCGTTTTTCGCCGTCATGGGCGCCTCGGCCGCCAT TATGCTTCGTTTTTCGCCGTCACGGGCGCCTCGGCCGCCAT < 41bp 0.560827295230556 0.780254592514688 0.8640219 0.86079514 prediction 0.438854594568264 Functional Gain - ATP6V0C ENSG00000185883;ENSG00000259784 CDS Human other chr16:2564152 chr16:2564154 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_119937 0 0 1 0 2 ATP6V0C chr16:2564081 3'AG 2564081 Downstream 74bp
chr16 2564154 2564154 1 + T C COAD 2564152 + 2564132 2564172 41 TATGCTTCGTTTTTCGCCGTCATGGGCGCCTCGGCCGCCAT TATGCTTCGTTTTTCGCCGTCACGGGCGCCTCGGCCGCCAT < 41bp 0.560827295230556 0.780254592514688 0.8640219 0.86079514 prediction 0.438854594568264 Functional Gain - ATP6V0C ENSG00000185883;ENSG00000259784 CDS Human other chr16:2564152 chr16:2564154 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_119937 0 0 1 0 2 ATP6V0C chr16:2564183 5'GT 2564183 Upstream 30bp
chr2 228135577 228135577 1 + C A LUSC 228135576 + 228135556 228135596 41 AAGTGGGTGTCCCAGGTGACCCGGGGCTCAGAGGCCAACCT AAGTGGGTGTCCCAGGTGACCAGGGGCTCAGAGGCCAACCT < 41bp 0.457512632475855 0.719421725123545 0.93223035 0.9371545 prediction 0.43884345024709 Functional Gain - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228135576 chr2:228135577 nonsynonymous SNV 0.037 5 22 hm5C_associated_SNPs_119939 0 0 0 0 1 COL4A3 chr2:228135668 5'GT 228135668 Upstream 92bp
chr14 90509453 90509453 1 + C T LGG 90509452 + 90509432 90509472 41 ACATTCCTTATGTCAAAGCACCGGATACGCATGGGAACATG ACATTCCTTATGTCAAAGCACTGGATACGCATGGGAACATG < 41bp 0.576681131463829 0.796089739565722 0.22626677 0.19190344 prediction 0.438817216203785 Functional Gain - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90509452 chr14:90509453 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_119945 0 0 0 0 1 TDP1 chr14:90509414 3'AG 90509414 Downstream 40bp
chr3 11076336 11076336 1 + C G rs2272401 11076335 + 11076315 11076355 41 GTCTTCCATGGTCCTCATCCCCGGGTACATGGCCTACATGT GTCTTCCATGGTCCTCATCCCGGGGTACATGGCCTACATGT < 41bp 0.671048021377315 0.890454797372806 0.8373369 0.93838876 prediction 0.438813551990981 Functional Gain - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11076335 chr3:11076336 synonymous SNV . 0 22 hm5C_associated_SNPs_119946 0 0 0 0 1 SLC6A1 chr3:11076384 5'GT 11076384 Upstream 49bp
chr15 41523559 41523559 1 + C G rs548660281 41523555 + 41523535 41523575 41 CGTCTCTTCTGGCGCCGCTGCTCCCGGAGGAGCTCCCGGCA CGTCTCTTCTGGCGCCGCTGCTCCGGGAGGAGCTCCCGGCA < 41bp 0.545819612145457 0.76522555763968 0.30620694 0.83535635 prediction 0.438811890988446 Functional Gain - CHP1 ENSG00000187446 UTR5 Human protein_coding chr15:41523555 chr15:41523559 . . 0 25 hm5C_associated_SNPs_119947 0 0 1 0 1 CHP1 chr15:41523647 5'GT 41523647 Upstream 89bp
chr11 118486784 118486784 1 + A G COAD 118486781 + 118486761 118486801 41 ACGGTGATTGGCTCTGCAGCCAGAGACATCTCACTACAGGG ACGGTGATTGGCTCTGCAGCCAGGGACATCTCACTACAGGG < 41bp 0.565703746052855 0.785108882944797 0.95710933 0.9608276 prediction 0.438810273783884 Functional Gain - PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118486781 chr11:118486784 synonymous SNV . 0 24 hm5C_associated_SNPs_119948 0 0 0 0 1 PHLDB1 chr11:118486756 3'AG 118486756 Downstream 29bp
chr7 128477266 128477266 1 + C T SKCM 128477265 + 128477245 128477285 41 CAACCAGCCCGTGGAGAACGCCCGGGAGGCCATGCAGCAGG CAACCAGCCCGTGGAGAACGCTCGGGAGGCCATGCAGCAGG < 41bp 0.559206968184752 0.778609732906212 0.52855694 0.24180013 prediction 0.43880552944292 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128477265 chr7:128477266 synonymous SNV . 0 22 hm5C_associated_SNPs_119949 0 0 1 0 2 FLNC chr7:128477214 3'AG 128477214 Downstream 53bp
chr7 128477266 128477266 1 + C T SKCM 128477265 + 128477245 128477285 41 CAACCAGCCCGTGGAGAACGCCCGGGAGGCCATGCAGCAGG CAACCAGCCCGTGGAGAACGCTCGGGAGGCCATGCAGCAGG < 41bp 0.559206968184752 0.778609732906212 0.52855694 0.24180013 prediction 0.43880552944292 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128477265 chr7:128477266 synonymous SNV . 0 22 hm5C_associated_SNPs_119949 0 0 1 0 2 FLNC chr7:128477311 5'GT 128477311 Upstream 46bp
chr10 115534690 115534690 1 + A G rs148184240 115534687 + 115534667 115534707 41 CTCCACCTGCAAGAACAAGGCTCAGGAATTGATTGGTGTCT CTCCACCTGCAAGAACAAGGCTCGGGAATTGATTGGTGTCT < 41bp 0.532853837870626 0.752254346600273 0.08101907 0.0922389 prediction 0.438801017459295 Functional Gain - PLEKHS1 ENSG00000148735 CDS Human protein_coding chr10:115534687 chr10:115534690 synonymous SNV . 0 24 hm5C_associated_SNPs_119951 0 0 0 0 1 PLEKHS1 chr10:115534752 5'GT 115534752 Upstream 63bp
chr12 53452199 53452199 1 + C A LUAD 53452198 + 53452178 53452218 41 CACGGACCACAGCTCACTTTCCCCAAGGACCAGCTTGACGA CACGGACCACAGCTCACTTTCACCAAGGACCAGCTTGACGA < 41bp 0.460933798198677 0.719382631605669 0.19284976 0.13583362 prediction 0.438765263211337 Functional Gain - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53452198 chr12:53452199 nonsynonymous SNV 0.991 1 22 hm5C_associated_SNPs_119956 0 0 0 0 1 TNS2 chr12:53452229 5'GT 53452229 Upstream 31bp
chr16 31308946 31308946 1 + C T HNSC 31308945 + 31308925 31308965 41 TACGAGCAGACCCGAGGGGGCCAGGTGTCCGTGTGCCCCTT TACGAGCAGACCCGAGGGGGCTAGGTGTCCGTGTGCCCCTT < 41bp 0.484392875370614 0.719371604429227 0.89677477 0.2195684 prediction 0.438743208858453 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31308945 chr16:31308946 stopgain 0.953 0 22 hm5C_associated_SNPs_119960 0 0 0 0 1 ITGAM chr16:31308975 5'GT 31308975 Upstream 30bp
chr18 29617140 29617140 1 + C T COAD 29617139 + 29617119 29617159 41 AAGTGGACCTGTCCTTATTGCCGGGCATATCTTCCTTCAGA AAGTGGACCTGTCCTTATTGCTGGGCATATCTTCCTTCAGA < 41bp 0.477292812003419 0.719370318335074 0.8958887 0.80237186 prediction 0.438740636670149 Functional Gain - RNF125 ENSG00000101695 CDS Human protein_coding chr18:29617139 chr18:29617140 nonsynonymous SNV 0.980 2 22 hm5C_associated_SNPs_119961 0 0 0 0 2 RNF125 chr18:29617079 3'AG 29617079 Downstream 62bp
chr18 29617140 29617140 1 + C T COAD 29617139 + 29617119 29617159 41 AAGTGGACCTGTCCTTATTGCCGGGCATATCTTCCTTCAGA AAGTGGACCTGTCCTTATTGCTGGGCATATCTTCCTTCAGA < 41bp 0.477292812003419 0.719370318335074 0.8958887 0.80237186 prediction 0.438740636670149 Functional Gain - RNF125 ENSG00000101695 CDS Human protein_coding chr18:29617139 chr18:29617140 nonsynonymous SNV 0.980 2 22 hm5C_associated_SNPs_119961 0 0 0 0 2 RNF125 chr18:29617232 5'GT 29617232 Upstream 93bp
chrY 22918666 22918666 1 + C A STAD 22918665 + 22918645 22918685 41 AGTTTGGTGTCTTTTTCAGGCCCGGGGCCCCAAGAAGCACT AGTTTGGTGTCTTTTTCAGGCACGGGGCCCCAAGAAGCACT < 41bp 0.603984026488676 0.823353439227031 0.11636257 0.20688766 prediction 0.43873882547671 Functional Gain - RPS4Y2 ENSG00000157828 CDS Human other chrY:22918665 chrY:22918666 synonymous SNV . 0 22 hm5C_associated_SNPs_119962 0 0 0 0 2 RPS4Y2 chrY:22918664 3'AG 22918664 Downstream 3bp
chrY 22918666 22918666 1 + C A STAD 22918665 + 22918645 22918685 41 AGTTTGGTGTCTTTTTCAGGCCCGGGGCCCCAAGAAGCACT AGTTTGGTGTCTTTTTCAGGCACGGGGCCCCAAGAAGCACT < 41bp 0.603984026488676 0.823353439227031 0.11636257 0.20688766 prediction 0.43873882547671 Functional Gain - RPS4Y2 ENSG00000157828 CDS Human other chrY:22918665 chrY:22918666 synonymous SNV . 0 22 hm5C_associated_SNPs_119962 0 0 0 0 2 RPS4Y2 chrY:22918741 5'GT 22918741 Upstream 76bp
chr5 1242943 1242943 1 + C G STAD 1242939 + 1242919 1242959 41 CCCAAGAGGGTGGCCCAGCTCCCCCTGAAGGCCTGCCTCCT CCCAAGAGGGTGGCCCAGCTCCCCGTGAAGGCCTGCCTCCT < 41bp 0.421666509800512 0.719367094688426 0.13944405 0.22708774 prediction 0.438734189376851 Functional Gain - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1242939 chr5:1242943 nonsynonymous SNV 0.003 1 25 hm5C_associated_SNPs_119963 0 0 0 0 1 SLC6A18 chr5:1242978 5'GT 1242978 Upstream 36bp
chr21 47549151 47549151 1 + C T LUAD 47549150 + 47549130 47549170 41 GAGCCCCCGGTCACCTTCCTCCGCACGGAAGAGGGGCCGGA GAGCCCCCGGTCACCTTCCTCTGCACGGAAGAGGGGCCGGA < 41bp 0.561721473129094 0.781087156476397 0.6061328 0.54264134 prediction 0.438731366694608 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47549150 chr21:47549151 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_119964 0 0 0 0 1 COL6A2 chr21:47549110 3'AG 47549110 Downstream 42bp
chr2 71908216 71908216 1 + T C UCEC 71908214 + 71908194 71908234 41 CAGGGCCGGGATGAGCCCAACATGAACCCTAAGCTTGAGGA CAGGGCCGGGATGAGCCCAACACGAACCCTAAGCTTGAGGA < 41bp 0.479998685821234 0.719361733702623 0.07935405 0.16458851 prediction 0.438723467405247 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71908214 chr2:71908216 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_119968 0 0 0 0 2 DYSF chr2:71908131 3'AG 71908131 Downstream 86bp
chr2 71908216 71908216 1 + T C UCEC 71908214 + 71908194 71908234 41 CAGGGCCGGGATGAGCCCAACATGAACCCTAAGCTTGAGGA CAGGGCCGGGATGAGCCCAACACGAACCCTAAGCTTGAGGA < 41bp 0.479998685821234 0.719361733702623 0.07935405 0.16458851 prediction 0.438723467405247 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71908214 chr2:71908216 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_119968 0 0 0 0 2 DYSF chr2:71908240 5'GT 71908240 Upstream 25bp
chr11 3427857 3427857 1 + C T SKCM 3427856 + 3427836 3427876 41 TTCAAGTGGCAGGAGCAGAACCCGAATCTTTCTGGGGATAG TTCAAGTGGCAGGAGCAGAACTCGAATCTTTCTGGGGATAG < 41bp 0.550000585790673 0.769358958351045 0.2518553 0.7015408 prediction 0.438716745120744 Functional Gain - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3427856 chr11:3427857 . . 0 22 hm5C_associated_SNPs_119970 0 0 1 0 1 TSSC2 chr11:3427945 5'GT 3427945 Upstream 89bp
chr1 173744849 173744849 1 + T C PAAD 173744846 + 173744826 173744866 41 ACCCGGAGGAAACACCTAGGCTGTGCAGTATATCAGGACAT ACCCGGAGGAAACACCTAGGCTGCGCAGTATATCAGGACAT < 41bp 0.521163869051425 0.740516607287147 0.051088423 0.03265977 prediction 0.438705476471445 Functional Gain - KLHL20 ENSG00000076321 CDS Human protein_coding chr1:173744846 chr1:173744849 synonymous SNV . 0 24 hm5C_associated_SNPs_119974 0 0 1 0 1 KLHL20 chr1:173744773 3'AG 173744773 Downstream 77bp
chr20 18523024 18523024 1 + C A THCA 18523023 + 18523003 18523043 41 TCCAGCACCCAGAGACGCATCCGCGTGACCACCATCGCCCG TCCAGCACCCAGAGACGCATCAGCGTGACCACCATCGCCCG < 41bp 0.615148813559568 0.834501225255497 0.38596222 0.29421443 prediction 0.438704823391858 Functional Gain - SEC23B ENSG00000101310 CDS Human protein_coding chr20:18523023 chr20:18523024 nonsynonymous SNV 0.995 5 22 hm5C_associated_SNPs_119975 0 0 1 0 2 SEC23B chr20:18522940 3'AG 18522940 Downstream 85bp
chr20 18523024 18523024 1 + C A THCA 18523023 + 18523003 18523043 41 TCCAGCACCCAGAGACGCATCCGCGTGACCACCATCGCCCG TCCAGCACCCAGAGACGCATCAGCGTGACCACCATCGCCCG < 41bp 0.615148813559568 0.834501225255497 0.38596222 0.29421443 prediction 0.438704823391858 Functional Gain - SEC23B ENSG00000101310 CDS Human protein_coding chr20:18523023 chr20:18523024 nonsynonymous SNV 0.995 5 22 hm5C_associated_SNPs_119975 0 0 1 0 2 SEC23B chr20:18523046 5'GT 18523046 Upstream 23bp
chr14 24772330 24772330 1 + C T PAAD 24772329 + 24772309 24772349 41 TGTCTTGGAAGCTGTATTGGCCCAGGGCCACCCAGGGGTAG TGTCTTGGAAGCTGTATTGGCTCAGGGCCACCCAGGGGTAG < 41bp 0.582508798200483 0.801860201364146 0.3723358 0.15656117 prediction 0.438702806327327 Functional Gain - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24772329 chr14:24772330 synonymous SNV . 0 22 hm5C_associated_SNPs_119977 0 0 1 0 2 NOP9 chr14:24772280 3'AG 24772280 Downstream 51bp
chr14 24772330 24772330 1 + C T PAAD 24772329 + 24772309 24772349 41 TGTCTTGGAAGCTGTATTGGCCCAGGGCCACCCAGGGGTAG TGTCTTGGAAGCTGTATTGGCTCAGGGCCACCCAGGGGTAG < 41bp 0.582508798200483 0.801860201364146 0.3723358 0.15656117 prediction 0.438702806327327 Functional Gain - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24772329 chr14:24772330 synonymous SNV . 0 22 hm5C_associated_SNPs_119977 0 0 1 0 2 NOP9 chr14:24772420 5'GT 24772420 Upstream 91bp
chr19 57835090 57835090 1 + A G COAD 57835087 + 57835067 57835107 41 GGATGTGGCTGTGACATTCACCCAGGAGGAGTGGGGACAGT GGATGTGGCTGTGACATTCACCCGGGAGGAGTGGGGACAGT < 41bp 0.478995902916805 0.719351300069766 0.09706169 0.3617583 prediction 0.438702600139533 Functional Gain - ZNF543 ENSG00000178229 CDS Human protein_coding chr19:57835087 chr19:57835090 nonsynonymous SNV 0.668 0 24 hm5C_associated_SNPs_119978 0 0 1 0 2 ZNF543 chr19:57835050 3'AG 57835050 Downstream 41bp
chr19 57835090 57835090 1 + A G COAD 57835087 + 57835067 57835107 41 GGATGTGGCTGTGACATTCACCCAGGAGGAGTGGGGACAGT GGATGTGGCTGTGACATTCACCCGGGAGGAGTGGGGACAGT < 41bp 0.478995902916805 0.719351300069766 0.09706169 0.3617583 prediction 0.438702600139533 Functional Gain - ZNF543 ENSG00000178229 CDS Human protein_coding chr19:57835087 chr19:57835090 nonsynonymous SNV 0.668 0 24 hm5C_associated_SNPs_119978 0 0 1 0 2 ZNF543 chr19:57835176 5'GT 57835176 Upstream 87bp
chr17 73753290 73753290 1 + C T UCEC 73753289 + 73753269 73753309 41 TGCCCACCCCAGGACCCTTCCCGCAGCTGGGCAGCCGTGCC TGCCCACCCCAGGACCCTTCCTGCAGCTGGGCAGCCGTGCC < 41bp 0.460712591090335 0.719346293778443 0.49961647 0.521943 prediction 0.438692587556886 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73753289 chr17:73753290 nonsynonymous SNV 0.979 3 22 hm5C_associated_SNPs_119980 0 0 0 0 1 ITGB4 chr17:73753281 3'AG 73753281 Downstream 10bp
chr10 116702490 116702490 1 + C T STAD 116702489 + 116702469 116702509 41 GGGACTCTAGACAGCGCAGCCCGAGGAGTTCTGGGTAAGAG GGGACTCTAGACAGCGCAGCCTGAGGAGTTCTGGGTAAGAG < 41bp 0.4772951864942 0.71934364631869 0.34381688 0.16576022 prediction 0.43868729263738 Functional Gain - TRUB1 ENSG00000165832 CDS Human protein_coding chr10:116702489 chr10:116702490 stopgain 0.988 0 22 hm5C_associated_SNPs_119982 0 0 1 0 2 TRUB1 chr10:116702404 3'AG 116702404 Downstream 87bp
chr10 116702490 116702490 1 + C T STAD 116702489 + 116702469 116702509 41 GGGACTCTAGACAGCGCAGCCCGAGGAGTTCTGGGTAAGAG GGGACTCTAGACAGCGCAGCCTGAGGAGTTCTGGGTAAGAG < 41bp 0.4772951864942 0.71934364631869 0.34381688 0.16576022 prediction 0.43868729263738 Functional Gain - TRUB1 ENSG00000165832 CDS Human protein_coding chr10:116702489 chr10:116702490 stopgain 0.988 0 22 hm5C_associated_SNPs_119982 0 0 1 0 2 TRUB1 chr10:116702502 5'GT 116702502 Upstream 13bp
chr14 57863536 57863536 1 + C T STAD 57863535 + 57863515 57863555 41 GATATGCACAAAAAGATGTTCCGCAGAGGTTATATAGCCAT GATATGCACAAAAAGATGTTCTGCAGAGGTTATATAGCCAT < 41bp 0.455761705595771 0.719341416152718 0.19738877 0.16759217 prediction 0.438682832305437 Functional Gain - NAA30 ENSG00000139977 CDS Human protein_coding chr14:57863535 chr14:57863536 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_119985 0 0 1 1 2 NAA30 chr14:57863470 3'AG 57863470 Downstream 67bp
chr14 57863536 57863536 1 + C T STAD 57863535 + 57863515 57863555 41 GATATGCACAAAAAGATGTTCCGCAGAGGTTATATAGCCAT GATATGCACAAAAAGATGTTCTGCAGAGGTTATATAGCCAT < 41bp 0.455761705595771 0.719341416152718 0.19738877 0.16759217 prediction 0.438682832305437 Functional Gain - NAA30 ENSG00000139977 CDS Human protein_coding chr14:57863535 chr14:57863536 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_119985 0 0 1 1 2 NAA30 chr14:57863593 5'GT 57863593 Upstream 58bp
chr3 142402990 142402990 1 + A G UCEC 142402987 + 142402967 142403007 41 CATCAAAGTTGGCCTTTTTGCTGATATTGAGATTTCCAGGA CATCAAAGTTGGCCTTTTTGCTGGTATTGAGATTTCCAGGA < 41bp 0.542032810833041 0.761362647335356 0.21691355 0.3327291 prediction 0.438659673004628 Functional Gain - PLS1 ENSG00000120756 CDS Human protein_coding chr3:142402987 chr3:142402990 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_119990 0 0 0 0 1 PLS1 chr3:142403013 5'GT 142403013 Upstream 24bp
chr1 33945215 33945215 1 + C A OV 33945211 + 33945191 33945231 41 CTATCTTGCCTAGGGAGGTCCAGACCTGGGTGCAGGCACGC CTATCTTGCCTAGGGAGGTCCAGAACTGGGTGCAGGCACGC < 41bp 0.303540354533963 0.719328753840605 0.10571644 0.13693094 prediction 0.43865750768121 Functional Gain - ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33945211 chr1:33945215 nonsynonymous SNV 0.953 0 25 hm5C_associated_SNPs_119991 0 0 1 0 1 ZSCAN20 chr1:33945306 5'GT 33945306 Upstream 92bp
chr11 93796824 93796824 1 + A G SKCM 93796821 + 93796801 93796841 41 CCTGACCTGGGTGTACCATTCGCACATCGACGCCCCAAAGG CCTGACCTGGGTGTACCATTCGCGCATCGACGCCCCAAAGG < 41bp 0.582662520300427 0.801984316679692 0.10045722 0.3606736 prediction 0.438643592758529 Functional Gain - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93796821 chr11:93796824 nonsynonymous SNV 0.983 5 24 hm5C_associated_SNPs_119994 0 0 0 0 1 HEPHL1 chr11:93796886 5'GT 93796886 Upstream 63bp
chr11 118222367 118222367 1 + C T COAD 118222366 + 118222346 118222386 41 CAGACAAGCAGACTCTGTTGCCCAATGACCAGCTCTACCAG CAGACAAGCAGACTCTGTTGCTCAATGACCAGCTCTACCAG < 41bp 0.456115665918153 0.71931518884903 0.856087 0.90635955 prediction 0.438630377698059 Functional Gain - CD3G ENSG00000160654 CDS Human protein_coding chr11:118222366 chr11:118222367 nonsynonymous SNV 0.953 0 22 hm5C_associated_SNPs_119997 0 0 0 0 2 CD3G chr11:118222343 3'AG 118222343 Downstream 25bp
chr11 118222367 118222367 1 + C T COAD 118222366 + 118222346 118222386 41 CAGACAAGCAGACTCTGTTGCCCAATGACCAGCTCTACCAG CAGACAAGCAGACTCTGTTGCTCAATGACCAGCTCTACCAG < 41bp 0.456115665918153 0.71931518884903 0.856087 0.90635955 prediction 0.438630377698059 Functional Gain - CD3G ENSG00000160654 CDS Human protein_coding chr11:118222366 chr11:118222367 nonsynonymous SNV 0.953 0 22 hm5C_associated_SNPs_119997 0 0 0 0 2 CD3G chr11:118222386 5'GT 118222386 Upstream 20bp
chr10 47945355 47945355 1 + C T UCEC 47945354 + 47945334 47945374 41 AGATGAGAGGGAAGCGTAGACCGCAGACCCGTGCAGCTAGG AGATGAGAGGGAAGCGTAGACTGCAGACCCGTGCAGCTAGG < 41bp 0.597440876299885 0.816752329607743 0.15819275 0.54368496 prediction 0.438622906615716 Functional Gain - ANXA8L1;CTSLP2 ENSG00000152726 CDS Human other chr10:47945354 chr10:47945355 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_119998 0 0 0 0 1 ANXA8L1;CTSLP2 chr10:47945324 3'AG 47945324 Downstream 32bp
chr3 122525709 122525709 1 + C T GBM 122525708 + 122525688 122525728 41 CTTTGTTTCATTTTAGGTCTCCGGATAACTGTGCTCCTGAC CTTTGTTTCATTTTAGGTCTCTGGATAACTGTGCTCCTGAC < 41bp 0.550303634141789 0.769614397286358 0.8787922 0.49751756 prediction 0.43862152628914 Functional Gain - DIRC2 ENSG00000138463 CDS Human protein_coding chr3:122525708 chr3:122525709 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_120000 0 0 0 0 2 DIRC2 chr3:122525704 3'AG 122525704 Downstream 6bp
chr3 122525709 122525709 1 + C T GBM 122525708 + 122525688 122525728 41 CTTTGTTTCATTTTAGGTCTCCGGATAACTGTGCTCCTGAC CTTTGTTTCATTTTAGGTCTCTGGATAACTGTGCTCCTGAC < 41bp 0.550303634141789 0.769614397286358 0.8787922 0.49751756 prediction 0.43862152628914 Functional Gain - DIRC2 ENSG00000138463 CDS Human protein_coding chr3:122525708 chr3:122525709 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_120000 0 0 0 0 2 DIRC2 chr3:122525797 5'GT 122525797 Upstream 89bp
chr16 55363128 55363128 1 + C T SKCM 55363127 + 55363107 55363147 41 TACCCAAAGCCTTTGGAAACCCCAAGTTTGCCCTGCAGGGA TACCCAAAGCCTTTGGAAACCTCAAGTTTGCCCTGCAGGGA < 41bp 0.595586720790505 0.814894738966986 0.37698796 0.8361017 prediction 0.438616036352962 Functional Gain - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55363127 chr16:55363128 nonsynonymous SNV 0.282 1 22 hm5C_associated_SNPs_120001 0 0 0 0 1 IRX6 chr16:55363223 5'GT 55363223 Upstream 96bp
chr2 3624137 3624137 1 + A G GBM 3624134 + 3624114 3624154 41 TCTTTGTTCCCGTTCCTCAACTGAAATCTTTCCAGAAAATC TCTTTGTTCCCGTTCCTCAACTGGAATCTTTCCAGAAAATC < 41bp 0.492164636710271 0.719303932722525 0.14447868 0.122944295 prediction 0.43860786544505 Functional Gain - RPS7 ENSG00000171863 CDS Human protein_coding chr2:3624134 chr2:3624137 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_120004 0 0 0 0 2 RPS7 chr2:3624077 3'AG 3624077 Downstream 61bp
chr2 3624137 3624137 1 + A G GBM 3624134 + 3624114 3624154 41 TCTTTGTTCCCGTTCCTCAACTGAAATCTTTCCAGAAAATC TCTTTGTTCCCGTTCCTCAACTGGAATCTTTCCAGAAAATC < 41bp 0.492164636710271 0.719303932722525 0.14447868 0.122944295 prediction 0.43860786544505 Functional Gain - RPS7 ENSG00000171863 CDS Human protein_coding chr2:3624134 chr2:3624137 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_120004 0 0 0 0 2 RPS7 chr2:3624220 5'GT 3624220 Upstream 84bp
chr9 6250532 6250532 1 + C A rs375298218 6250528 + 6250508 6250548 41 GTACTTTATGAAGCTCCGCTCTGGCCTTATGATAAAAAAGG GTACTTTATGAAGCTCCGCTCTGGACTTATGATAAAAAAGG < 41bp 0.317026516386156 0.719303215894315 0.084281564 0.04532227 prediction 0.43860643178863 Functional Gain - IL33 ENSG00000137033 CDS Human protein_coding chr9:6250528 chr9:6250532 synonymous SNV . 0 25 hm5C_associated_SNPs_120005 0 0 0 0 2 IL33 chr9:6250474 3'AG 6250474 Downstream 59bp
chr9 6250532 6250532 1 + C A rs375298218 6250528 + 6250508 6250548 41 GTACTTTATGAAGCTCCGCTCTGGCCTTATGATAAAAAAGG GTACTTTATGAAGCTCCGCTCTGGACTTATGATAAAAAAGG < 41bp 0.317026516386156 0.719303215894315 0.084281564 0.04532227 prediction 0.43860643178863 Functional Gain - IL33 ENSG00000137033 CDS Human protein_coding chr9:6250528 chr9:6250532 synonymous SNV . 0 25 hm5C_associated_SNPs_120005 0 0 0 0 2 IL33 chr9:6250599 5'GT 6250599 Upstream 68bp
chr7 148489851 148489851 1 + T C STAD 148489848 + 148489828 148489868 41 TCCAGATGGCTATCCTGCTTCAGTACAACACGGAAGATGCC TCCAGATGGCTATCCTGCTTCAGCACAACACGGAAGATGCC < 41bp 0.501419004596693 0.720721305203351 0.35532057 0.22257003 prediction 0.438604601213315 Functional Gain - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148489848 chr7:148489851 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_120006 0 0 1 0 2 CUL1 chr7:148489818 3'AG 148489818 Downstream 34bp
chr7 148489851 148489851 1 + T C STAD 148489848 + 148489828 148489868 41 TCCAGATGGCTATCCTGCTTCAGTACAACACGGAAGATGCC TCCAGATGGCTATCCTGCTTCAGCACAACACGGAAGATGCC < 41bp 0.501419004596693 0.720721305203351 0.35532057 0.22257003 prediction 0.438604601213315 Functional Gain - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148489848 chr7:148489851 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_120006 0 0 1 0 2 CUL1 chr7:148489910 5'GT 148489910 Upstream 60bp
chr6 44150954 44150954 1 + A G KICH 44150951 + 44150931 44150971 41 ACAGCTTCATCAGCTGTTTCCTGAGGCTAAAGACCATGTTC ACAGCTTCATCAGCTGTTTCCTGGGGCTAAAGACCATGTTC < 41bp 0.571542426619601 0.790842963390049 0.4048229 0.8631505 prediction 0.438601073540895 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44150951 chr6:44150954 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_120007 0 0 0 0 2 CAPN11 chr6:44150856 3'AG 44150856 Downstream 99bp
chr6 44150954 44150954 1 + A G KICH 44150951 + 44150931 44150971 41 ACAGCTTCATCAGCTGTTTCCTGAGGCTAAAGACCATGTTC ACAGCTTCATCAGCTGTTTCCTGGGGCTAAAGACCATGTTC < 41bp 0.571542426619601 0.790842963390049 0.4048229 0.8631505 prediction 0.438601073540895 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44150951 chr6:44150954 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_120007 0 0 0 0 2 CAPN11 chr6:44150972 5'GT 44150972 Upstream 19bp
chr7 138863302 138863302 1 + C G rs115477146 138863301 + 138863281 138863321 41 CATCTTTAACTTTAATTATGCCCAAGCCAAAGCTGCAACAG CATCTTTAACTTTAATTATGCGCAAGCCAAAGCTGCAACAG < 41bp 0.408999737224498 0.719299817913819 0.015257001 0.053135276 prediction 0.438599635827638 Functional Gain - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138863301 chr7:138863302 synonymous SNV . 0 22 hm5C_associated_SNPs_120008 0 0 0 0 1 TTC26 chr7:138863344 5'GT 138863344 Upstream 43bp
chr1 211533333 211533333 1 + T C UCEC 211533331 + 211533311 211533351 41 GAGCCAGTCCTACGGAAAGACCTGAAAGAGCATTTGAGTGC GAGCCAGTCCTACGGAAAGACCCGAAAGAGCATTTGAGTGC < 41bp 0.425464163374153 0.719298375721136 0.22496909 0.16087574 prediction 0.438596751442271 Functional Gain - TRAF5 ENSG00000082512 CDS Human protein_coding chr1:211533331 chr1:211533333 nonsynonymous SNV 0.901 2 23 hm5C_associated_SNPs_120011 0 0 0 0 2 TRAF5 chr1:211533254 3'AG 211533254 Downstream 80bp
chr1 211533333 211533333 1 + T C UCEC 211533331 + 211533311 211533351 41 GAGCCAGTCCTACGGAAAGACCTGAAAGAGCATTTGAGTGC GAGCCAGTCCTACGGAAAGACCCGAAAGAGCATTTGAGTGC < 41bp 0.425464163374153 0.719298375721136 0.22496909 0.16087574 prediction 0.438596751442271 Functional Gain - TRAF5 ENSG00000082512 CDS Human protein_coding chr1:211533331 chr1:211533333 nonsynonymous SNV 0.901 2 23 hm5C_associated_SNPs_120011 0 0 0 0 2 TRAF5 chr1:211533418 5'GT 211533418 Upstream 86bp
chr3 50114462 50114462 1 + C T SKCM 50114461 + 50114441 50114481 41 GCTGAAGGCCGGATGAGGGGCCCCAGTGTTGGAGCCTCAGG GCTGAAGGCCGGATGAGGGGCTCCAGTGTTGGAGCCTCAGG < 41bp 0.462481989273528 0.719297758643948 0.13034418 0.89063996 prediction 0.438595517287895 Functional Gain - RBM6 ENSG00000004534 CDS Human protein_coding chr3:50114461 chr3:50114462 nonsynonymous SNV 0.110 0 22 hm5C_associated_SNPs_120012 0 0 1 0 1 RBM6 chr3:50114441 3'AG 50114441 Downstream 22bp
chr2 27290408 27290408 1 + T C UCEC 27290406 + 27290386 27290426 41 GGCAGCAGCAGCCCCTGAACCATCGTCCTGCAGGCAGCCTC GGCAGCAGCAGCCCCTGAACCACCGTCCTGCAGGCAGCCTC < 41bp 0.618622101764804 0.837909798190977 0.4322445 0.5569331 prediction 0.438575392852346 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27290406 chr2:27290408 synonymous SNV . 0 23 hm5C_associated_SNPs_120013 0 0 0 0 1 AGBL5 chr2:27290362 3'AG 27290362 Downstream 47bp
chr1 230895316 230895316 1 + C T UCEC 230895315 + 230895295 230895335 41 GCTTAATCAAAAAGCACTGGCCAGAGTCATCCCCCAGGACC GCTTAATCAAAAAGCACTGGCTAGAGTCATCCCCCAGGACC < 41bp 0.58844094111687 0.807725259243413 0.3903404 0.22342458 prediction 0.438568636253087 Functional Gain - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230895315 chr1:230895316 synonymous SNV . 0 22 hm5C_associated_SNPs_120016 0 0 0 0 2 CAPN9 chr1:230895258 3'AG 230895258 Downstream 59bp
chr1 230895316 230895316 1 + C T UCEC 230895315 + 230895295 230895335 41 GCTTAATCAAAAAGCACTGGCCAGAGTCATCCCCCAGGACC GCTTAATCAAAAAGCACTGGCTAGAGTCATCCCCCAGGACC < 41bp 0.58844094111687 0.807725259243413 0.3903404 0.22342458 prediction 0.438568636253087 Functional Gain - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230895315 chr1:230895316 synonymous SNV . 0 22 hm5C_associated_SNPs_120016 0 0 0 0 2 CAPN9 chr1:230895376 5'GT 230895376 Upstream 61bp
chr17 48669336 48669336 1 + T G BRCA 48669333 + 48669313 48669353 41 GACTGGAACAAAGTCCTCTACAATGGTATGGCCTCCACGTC GACTGGAACAAAGTCCTCTACAAGGGTATGGCCTCCACGTC < 41bp 0.372759594409228 0.719284048147605 0.100899786 0.53711843 prediction 0.438568096295211 Functional Gain - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48669333 chr17:48669336 nonsynonymous SNV 0.926 5 24 hm5C_associated_SNPs_120017 0 0 0 0 1 CACNA1G chr17:48669298 3'AG 48669298 Downstream 39bp
chr11 2325427 2325427 1 + T C rs61744929 2325425 + 2325405 2325445 41 GTGAGGGAGGCCCAGGGCCTCATGGCAGGGGTGAGTTCATT GTGAGGGAGGCCCAGGGCCTCACGGCAGGGGTGAGTTCATT < 41bp 0.500576897630668 0.71985338089265 0.62606496 0.529462 prediction 0.438552966523963 Functional Gain - TSPAN32 ENSG00000064201 CDS Human protein_coding chr11:2325425 chr11:2325427 nonsynonymous SNV 0.776 1 23 hm5C_associated_SNPs_120026 0 1 1 0 2 TSPAN32 chr11:2325337 3'AG 2325337 Downstream 91bp
chr11 2325427 2325427 1 + T C rs61744929 2325425 + 2325405 2325445 41 GTGAGGGAGGCCCAGGGCCTCATGGCAGGGGTGAGTTCATT GTGAGGGAGGCCCAGGGCCTCACGGCAGGGGTGAGTTCATT < 41bp 0.500576897630668 0.71985338089265 0.62606496 0.529462 prediction 0.438552966523963 Functional Gain - TSPAN32 ENSG00000064201 CDS Human protein_coding chr11:2325425 chr11:2325427 nonsynonymous SNV 0.776 1 23 hm5C_associated_SNPs_120026 0 1 1 0 2 TSPAN32 chr11:2325434 5'GT 2325434 Upstream 8bp
chr2 44102364 44102364 1 + C T rs558635043 44102363 + 44102343 44102383 41 ACTGGCTGGCCAACCTGAGGCCAGGCCTCCAGCCCTTCCTG ACTGGCTGGCCAACCTGAGGCTAGGCCTCCAGCCCTTCCTG < 41bp 0.555362646336846 0.774625956899229 0.30809474 0.18376204 prediction 0.438526621124767 Functional Gain - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44102363 chr2:44102364 nonsynonymous SNV 0.049 1 22 hm5C_associated_SNPs_120032 1 0 0 0 1 ABCG8 chr2:44102285 3'AG 44102285 Downstream 80bp
chr20 43547903 43547903 1 + T C UCEC 43547901 + 43547881 43547921 41 GCTTTGTCAACTTTGAGAAGCATGAGGAAGCCCAGAAGGTA GCTTTGTCAACTTTGAGAAGCACGAGGAAGCCCAGAAGGTA < 41bp 0.593256885610317 0.812512007819516 0.2566244 0.26782924 prediction 0.438510244418398 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43547901 chr20:43547903 synonymous SNV . 0 23 hm5C_associated_SNPs_120035 0 0 1 0 2 PABPC1L chr20:43547824 3'AG 43547824 Downstream 80bp
chr20 43547903 43547903 1 + T C UCEC 43547901 + 43547881 43547921 41 GCTTTGTCAACTTTGAGAAGCATGAGGAAGCCCAGAAGGTA GCTTTGTCAACTTTGAGAAGCACGAGGAAGCCCAGAAGGTA < 41bp 0.593256885610317 0.812512007819516 0.2566244 0.26782924 prediction 0.438510244418398 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43547901 chr20:43547903 synonymous SNV . 0 23 hm5C_associated_SNPs_120035 0 0 1 0 2 PABPC1L chr20:43547918 5'GT 43547918 Upstream 16bp
chr2 27558560 27558560 1 - G A SKCM 27558561 - 27558541 27558581 41 CCCTTTAGGCTCCTCTCCTGCCCCGGTTGGGTCTCTTGGCT CCCTTTAGGCTCCTCTCCTGCTCCGGTTGGGTCTCTTGGCT < 41bp 0.446180503733198 0.719250361137823 0.13804036 0.26462412 prediction 0.438500722275645 Functional Gain - GTF3C2 ENSG00000115207 CDS Human protein_coding chr2:27558561 chr2:27558560 nonsynonymous SNV 0.908 4 22 hm5C_associated_SNPs_120038 0 0 1 0 2 GTF3C2 chr2:27558465 5'GT 27558465 Upstream 96bp
chr2 27558560 27558560 1 - G A SKCM 27558561 - 27558541 27558581 41 CCCTTTAGGCTCCTCTCCTGCCCCGGTTGGGTCTCTTGGCT CCCTTTAGGCTCCTCTCCTGCTCCGGTTGGGTCTCTTGGCT < 41bp 0.446180503733198 0.719250361137823 0.13804036 0.26462412 prediction 0.438500722275645 Functional Gain - GTF3C2 ENSG00000115207 CDS Human protein_coding chr2:27558561 chr2:27558560 nonsynonymous SNV 0.908 4 22 hm5C_associated_SNPs_120038 0 0 1 0 2 GTF3C2 chr2:27558573 3'AG 27558573 Downstream 14bp
chr1 116929940 116929940 1 + C A LGG 116929939 + 116929919 116929959 41 TCTGCTCGTGCAGCTGAGATCCTGGCGCGAGATGGTCCCAA TCTGCTCGTGCAGCTGAGATCATGGCGCGAGATGGTCCCAA < 41bp 0.456778081266256 0.719245603163905 0.65169543 0.81455785 prediction 0.438491206327809 Functional Gain - ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116929939 chr1:116929940 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_120041 0 0 1 0 1 ATP1A1 chr1:116929910 3'AG 116929910 Downstream 31bp
chr14 23848306 23848306 1 + C A STAD 23848305 + 23848285 23848325 41 TCCTTTGCAGCTGTGACCTCCCGGGACGGAGCTGCCATTGC TCCTTTGCAGCTGTGACCTCCAGGGACGGAGCTGCCATTGC < 41bp 0.601234290274088 0.820470081847425 0.61768407 0.92987967 prediction 0.438471583146675 Functional Gain - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23848305 chr14:23848306 synonymous SNV . 0 22 hm5C_associated_SNPs_120043 0 0 0 0 2 CMTM5 chr14:23848240 3'AG 23848240 Downstream 67bp
chr14 23848306 23848306 1 + C A STAD 23848305 + 23848285 23848325 41 TCCTTTGCAGCTGTGACCTCCCGGGACGGAGCTGCCATTGC TCCTTTGCAGCTGTGACCTCCAGGGACGGAGCTGCCATTGC < 41bp 0.601234290274088 0.820470081847425 0.61768407 0.92987967 prediction 0.438471583146675 Functional Gain - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23848305 chr14:23848306 synonymous SNV . 0 22 hm5C_associated_SNPs_120043 0 0 0 0 2 CMTM5 chr14:23848332 5'GT 23848332 Upstream 27bp
chr20 58587616 58587616 1 + C T UCEC 58587615 + 58587595 58587635 41 CCAATGTGCTGGAAGATGACCCCGGCTACCTACCTCACGTC CCAATGTGCTGGAAGATGACCTCGGCTACCTACCTCACGTC < 41bp 0.536665394888061 0.755891473619186 0.8631604 0.5584369 prediction 0.438452157462251 Functional Gain - CDH26 ENSG00000124215 CDS Human protein_coding chr20:58587615 chr20:58587616 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_120045 0 0 0 0 1 CDH26 chr20:58587582 3'AG 58587582 Downstream 35bp
chr9 33796705 33796705 1 + C A SKCM 33796701 + 33796681 33796721 41 CTACACCTGTGAGGAGAATTCTCTCCCCTACCAGGTGTCCC CTACACCTGTGAGGAGAATTCTCTACCCTACCAGGTGTCCC < 41bp 0.281459252348073 0.719225085429945 0.11533499 0.37261897 prediction 0.43845017085989 Functional Gain - PRSS3 ENSG00000010438 CDS Human protein_coding chr9:33796701 chr9:33796705 synonymous SNV . 0 25 hm5C_associated_SNPs_120047 0 0 0 0 2 PRSS3 chr9:33796641 3'AG 33796641 Downstream 65bp
chr9 33796705 33796705 1 + C A SKCM 33796701 + 33796681 33796721 41 CTACACCTGTGAGGAGAATTCTCTCCCCTACCAGGTGTCCC CTACACCTGTGAGGAGAATTCTCTACCCTACCAGGTGTCCC < 41bp 0.281459252348073 0.719225085429945 0.11533499 0.37261897 prediction 0.43845017085989 Functional Gain - PRSS3 ENSG00000010438 CDS Human protein_coding chr9:33796701 chr9:33796705 synonymous SNV . 0 25 hm5C_associated_SNPs_120047 0 0 0 0 2 PRSS3 chr9:33796800 5'GT 33796800 Upstream 96bp
chr19 41884337 41884337 1 + C T rs73931469 41884336 + 41884316 41884356 41 CTTAAGAGAGATAGCCTTTGCCGAGTCCCTGAGGGGTTTGC CTTAAGAGAGATAGCCTTTGCTGAGTCCCTGAGGGGTTTGC < 41bp 0.484725198870219 0.719224904380198 0.24911061 0.21827215 prediction 0.438449808760395 Functional Gain - TMEM91 ENSG00000142046;ENSG00000248098;ENSG00000255730 CDS Human other chr19:41884336 chr19:41884337 synonymous SNV . 0 22 hm5C_associated_SNPs_120048 0 0 1 0 1 TMEM91 chr19:41884424 5'GT 41884424 Upstream 88bp
chr7 2687663 2687663 1 + C T HNSC 2687662 + 2687642 2687682 41 CTGGTGCTGGTTGGCCTCATCCGCAGCTCCAAGGGCATCCT CTGGTGCTGGTTGGCCTCATCTGCAGCTCCAAGGGCATCCT < 41bp 0.59261856415076 0.811842792040035 0.79564947 0.8079607 prediction 0.43844845577855 Functional Gain - TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2687662 chr7:2687663 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_120049 0 0 1 0 2 TTYH3 chr7:2687593 3'AG 2687593 Downstream 71bp
chr7 2687663 2687663 1 + C T HNSC 2687662 + 2687642 2687682 41 CTGGTGCTGGTTGGCCTCATCCGCAGCTCCAAGGGCATCCT CTGGTGCTGGTTGGCCTCATCTGCAGCTCCAAGGGCATCCT < 41bp 0.59261856415076 0.811842792040035 0.79564947 0.8079607 prediction 0.43844845577855 Functional Gain - TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2687662 chr7:2687663 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_120049 0 0 1 0 2 TTYH3 chr7:2687688 5'GT 2687688 Upstream 26bp
chr17 37872618 37872618 1 + C G BLCA 37872617 + 37872597 37872637 41 CTGCTGGGGTCCAGGGCCCACCCAGTGTGTCAACTGCAGCC CTGCTGGGGTCCAGGGCCCACGCAGTGTGTCAACTGCAGCC < 41bp 0.402521365358508 0.719221966502639 0.323075 0.2522382 prediction 0.438443933005279 Functional Gain - ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37872617 chr17:37872618 synonymous SNV . 0 22 hm5C_associated_SNPs_120051 0 0 1 0 2 ERBB2 chr17:37872554 3'AG 37872554 Downstream 65bp
chr17 37872618 37872618 1 + C G BLCA 37872617 + 37872597 37872637 41 CTGCTGGGGTCCAGGGCCCACCCAGTGTGTCAACTGCAGCC CTGCTGGGGTCCAGGGCCCACGCAGTGTGTCAACTGCAGCC < 41bp 0.402521365358508 0.719221966502639 0.323075 0.2522382 prediction 0.438443933005279 Functional Gain - ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37872617 chr17:37872618 synonymous SNV . 0 22 hm5C_associated_SNPs_120051 0 0 1 0 2 ERBB2 chr17:37872686 5'GT 37872686 Upstream 69bp
chr17 19316007 19316007 1 + C T UCEC 19316006 + 19315986 19316026 41 CCGCCCTGCTGTCCTGAGTGCCGGAAGATATGCAAGCAGAA CCGCCCTGCTGTCCTGAGTGCTGGAAGATATGCAAGCAGAA < 41bp 0.571911649664255 0.791129201009496 0.6697194 0.33835703 prediction 0.438435102690484 Functional Gain - RNF112 ENSG00000128482 CDS Human protein_coding chr17:19316006 chr17:19316007 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_120052 0 0 0 0 1 RNF112 chr17:19316096 5'GT 19316096 Upstream 90bp
chr5 156679624 156679624 1 + A G LUAD 156679621 + 156679601 156679641 41 TTTTTTCCCTCTCCAGAGACCAGAAGATCGGCCAGCCTTCT TTTTTTCCCTCTCCAGAGACCAGGAGATCGGCCAGCCTTCT < 41bp 0.527242340668715 0.746445545628722 0.93194103 0.94193727 prediction 0.438406409920014 Functional Gain - ITK ENSG00000113263 CDS Human protein_coding chr5:156679621 chr5:156679624 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_120053 0 0 0 0 1 ITK chr5:156679617 3'AG 156679617 Downstream 8bp
chr8 91937824 91937824 1 + C T SKCM 91937823 + 91937803 91937843 41 CCTGGAAAACGATCAAGCCGCCGAGTCCAGAGACACAACAG CCTGGAAAACGATCAAGCCGCTGAGTCCAGAGACACAACAG < 41bp 0.473881351456156 0.719199784438541 0.2510226 0.16754869 prediction 0.438399568877081 Functional Gain - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91937823 chr8:91937824 stopgain 0.998 1 22 hm5C_associated_SNPs_120056 0 0 0 0 2 NECAB1 chr8:91937763 3'AG 91937763 Downstream 62bp
chr8 91937824 91937824 1 + C T SKCM 91937823 + 91937803 91937843 41 CCTGGAAAACGATCAAGCCGCCGAGTCCAGAGACACAACAG CCTGGAAAACGATCAAGCCGCTGAGTCCAGAGACACAACAG < 41bp 0.473881351456156 0.719199784438541 0.2510226 0.16754869 prediction 0.438399568877081 Functional Gain - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91937823 chr8:91937824 stopgain 0.998 1 22 hm5C_associated_SNPs_120056 0 0 0 0 2 NECAB1 chr8:91937884 5'GT 91937884 Upstream 61bp
chr3 66430877 66430877 1 - G A rs332374 66430878 - 66430858 66430898 41 CTTTAGCAAGGTTGTATCACCCGGACTCCACAGAGCTACAG CTTTAGCAAGGTTGTATCACCTGGACTCCACAGAGCTACAG < 41bp 0.558335045204077 0.777529666104771 0.26159412 0.22112283 prediction 0.438389241801388 Functional Gain - LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430878 chr3:66430877 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_120057 0 0 1 0 1 LRIG1 chr3:66430913 3'AG 66430913 Downstream 37bp
chr8 145151944 145151944 1 + A G LUSC 145151941 + 145151921 145151961 41 GCTTGTCGTTGGCCAGGCACCCCAGCTACCATGTCCCAGAT GCTTGTCGTTGGCCAGGCACCCCGGCTACCATGTCCCAGAT < 41bp 0.561884989964302 0.781063078214023 0.12767929 0.37833917 prediction 0.438356176499441 Functional Gain - CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151941 chr8:145151944 synonymous SNV . 0 24 hm5C_associated_SNPs_120061 0 0 1 0 2 CYC1 chr8:145151937 3'AG 145151937 Downstream 8bp
chr8 145151944 145151944 1 + A G LUSC 145151941 + 145151921 145151961 41 GCTTGTCGTTGGCCAGGCACCCCAGCTACCATGTCCCAGAT GCTTGTCGTTGGCCAGGCACCCCGGCTACCATGTCCCAGAT < 41bp 0.561884989964302 0.781063078214023 0.12767929 0.37833917 prediction 0.438356176499441 Functional Gain - CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151941 chr8:145151944 synonymous SNV . 0 24 hm5C_associated_SNPs_120061 0 0 1 0 2 CYC1 chr8:145152037 5'GT 145152037 Upstream 94bp
chr19 54609254 54609254 1 + C A MESO 54609253 + 54609233 54609273 41 CTCCACAGCTGTAATTCTGCCCCCATTGAGCCCCTACTTCA CTCCACAGCTGTAATTCTGCCACCATTGAGCCCCTACTTCA < 41bp 0.593951127866772 0.813128508506681 0.022016913 0.031847417 prediction 0.438354761279819 Functional Gain - NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54609253 chr19:54609254 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_120062 0 0 1 0 2 NDUFA3 chr19:54609241 3'AG 54609241 Downstream 14bp
chr19 54609254 54609254 1 + C A MESO 54609253 + 54609233 54609273 41 CTCCACAGCTGTAATTCTGCCCCCATTGAGCCCCTACTTCA CTCCACAGCTGTAATTCTGCCACCATTGAGCCCCTACTTCA < 41bp 0.593951127866772 0.813128508506681 0.022016913 0.031847417 prediction 0.438354761279819 Functional Gain - NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54609253 chr19:54609254 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_120062 0 0 1 0 2 NDUFA3 chr19:54609318 5'GT 54609318 Upstream 65bp
chr3 132531654 132531654 1 + C A rs12054033 132531653 + 132531633 132531673 41 GCTGGGATTACAGGCATAAACCACTGTGCCTGCCCTGGCTG GCTGGGATTACAGGCATAAACAACTGTGCCTGCCCTGGCTG < 41bp 0.572545182833497 0.791721710613067 0.7604186 0.82512224 prediction 0.43835305555914 Functional Gain - NPHP3-AS1 ENSG00000248724 ncRNA_exonic Human antisense chr3:132531653 chr3:132531654 . . 0 22 hm5C_associated_SNPs_120063 0 0 0 0 1 NPHP3-AS1 chr3:132531719 5'GT 132531719 Upstream 66bp
chr4 111398135 111398135 1 + A G STAD 111398132 + 111398112 111398152 41 GTGGAGATGGCCTGTATCTCCTGACCATGGAGTTCGCCGGC GTGGAGATGGCCTGTATCTCCTGGCCATGGAGTTCGCCGGC < 41bp 0.592111222848713 0.811287740750818 0.24070609 0.81980604 prediction 0.43835303580421 Functional Gain - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111398132 chr4:111398135 nonsynonymous SNV 0.825 1 24 hm5C_associated_SNPs_120064 0 0 0 0 1 ENPEP chr4:111398214 5'GT 111398214 Upstream 80bp
chr9 131117338 131117338 1 + C T BLCA 131117337 + 131117317 131117357 41 CCTTCCCCACCCCAGGTGAGCCGGGCCAGCTGGTGGGCCGC CCTTCCCCACCCCAGGTGAGCTGGGCCAGCTGGTGGGCCGC < 41bp 0.544791682405378 0.76396759106122 0.897933 0.64906836 prediction 0.438351817311684 Functional Gain - SLC27A4 ENSG00000167114 CDS Human protein_coding chr9:131117337 chr9:131117338 nonsynonymous SNV 0.810 4 22 hm5C_associated_SNPs_120066 0 0 0 0 1 SLC27A4 chr9:131117332 3'AG 131117332 Downstream 7bp
chrX 7811252 7811252 1 + C T SKCM 7811251 + 7811231 7811271 41 TTGAGCTGCGGAAGATGAGTCCAAAGCCGAGAGCCTCGGGA TTGAGCTGCGGAAGATGAGTCTAAAGCCGAGAGCCTCGGGA < 41bp 0.531710834832913 0.750878442086598 0.5310106 0.604638 prediction 0.43833521450737 Functional Gain - VCX ENSG00000182583 CDS Human protein_coding chrX:7811251 chrX:7811252 nonsynonymous SNV 0.001 3 22 hm5C_associated_SNPs_120071 0 0 0 0 1 VCX chrX:7811346 5'GT 7811346 Upstream 95bp
chr17 40690691 40690691 1 + C T HNSC 40690690 + 40690670 40690710 41 TTCCTTCTGTTCCTCCAGCACCGGGTCCTGGACCAGATGCG TTCCTTCTGTTCCTCCAGCACTGGGTCCTGGACCAGATGCG < 41bp 0.475638782461658 0.719155851244125 0.6937239 0.41716462 prediction 0.438311702488249 Functional Gain - NAGLU ENSG00000108784 CDS Human protein_coding chr17:40690690 chr17:40690691 nonsynonymous SNV 0.569 3 22 hm5C_associated_SNPs_120074 0 0 1 0 2 NAGLU chr17:40690688 3'AG 40690688 Downstream 4bp
chr17 40690691 40690691 1 + C T HNSC 40690690 + 40690670 40690710 41 TTCCTTCTGTTCCTCCAGCACCGGGTCCTGGACCAGATGCG TTCCTTCTGTTCCTCCAGCACTGGGTCCTGGACCAGATGCG < 41bp 0.475638782461658 0.719155851244125 0.6937239 0.41716462 prediction 0.438311702488249 Functional Gain - NAGLU ENSG00000108784 CDS Human protein_coding chr17:40690690 chr17:40690691 nonsynonymous SNV 0.569 3 22 hm5C_associated_SNPs_120074 0 0 1 0 2 NAGLU chr17:40690773 5'GT 40690773 Upstream 83bp
chr7 121943895 121943895 1 - G A HNSC 121943896 - 121943876 121943916 41 GCAGCCAAAAACGTATTTAGCCGAAAGGAATAAACTGGTGG GCAGCCAAAAACGTATTTAGCTGAAAGGAATAAACTGGTGG < 41bp 0.557339598605552 0.776495077350849 0.27573812 0.20201632 prediction 0.438310957490594 Functional Gain - FEZF1 ENSG00000128610 CDS Human protein_coding chr7:121943896 chr7:121943895 synonymous SNV . 0 22 hm5C_associated_SNPs_120075 0 0 0 0 1 FEZF1 chr7:121943912 3'AG 121943912 Downstream 18bp
chr9 136516840 136516840 1 + C T UCEC 136516839 + 136516819 136516859 41 AAGGTGGTCACAGTGCTGGTCCGGGACGGCCGGGAGTGGGA AAGGTGGTCACAGTGCTGGTCTGGGACGGCCGGGAGTGGGA < 41bp 0.471311666696319 0.719150133247176 0.27048868 0.39178628 prediction 0.438300266494353 Functional Gain - DBH ENSG00000123454 CDS Human protein_coding chr9:136516839 chr9:136516840 nonsynonymous SNV 0.038 4 22 hm5C_associated_SNPs_120077 0 0 0 0 2 DBH chr9:136516756 3'AG 136516756 Downstream 85bp
chr9 136516840 136516840 1 + C T UCEC 136516839 + 136516819 136516859 41 AAGGTGGTCACAGTGCTGGTCCGGGACGGCCGGGAGTGGGA AAGGTGGTCACAGTGCTGGTCTGGGACGGCCGGGAGTGGGA < 41bp 0.471311666696319 0.719150133247176 0.27048868 0.39178628 prediction 0.438300266494353 Functional Gain - DBH ENSG00000123454 CDS Human protein_coding chr9:136516839 chr9:136516840 nonsynonymous SNV 0.038 4 22 hm5C_associated_SNPs_120077 0 0 0 0 2 DBH chr9:136516899 5'GT 136516899 Upstream 60bp
chr1 89875897 89875897 1 + T C CESC 89875895 + 89875875 89875915 41 GACATGGTATCAGAGATCCACATGACAGGCCCAATGTGCCT GACATGGTATCAGAGATCCACACGACAGGCCCAATGTGCCT < 41bp 0.551559511160772 0.770706439391726 0.1305972 0.048448205 prediction 0.438293856461908 Functional Gain - GBP1P1 ENSG00000225492 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:89875895 chr1:89875897 . . 0 23 hm5C_associated_SNPs_120080 0 0 0 0 1 GBP1P1 chr1:89875859 3'AG 89875859 Downstream 39bp
chr1 176526308 176526308 1 + C T STAD 176526307 + 176526287 176526327 41 GAAGTGCTGGCTGAGATTCCCCGGGAGGCGTTCACAGTGGA GAAGTGCTGGCTGAGATTCCCTGGGAGGCGTTCACAGTGGA < 41bp 0.498571844395197 0.719141273559815 0.8862536 0.87314194 prediction 0.43828254711963 Functional Gain - PAPPA2 ENSG00000116183 CDS Human protein_coding chr1:176526307 chr1:176526308 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_120083 0 0 0 0 1 PAPPA2 chr1:176526377 5'GT 176526377 Upstream 70bp
chr16 67572650 67572650 1 + C T LGG 67572649 + 67572629 67572669 41 CCGAGTGTCCAGGATGTTTTCCGTGGCTCACCCAGCCGCCA CCGAGTGTCCAGGATGTTTTCTGTGGCTCACCCAGCCGCCA < 41bp 0.530938759887678 0.750077102414554 0.8784667 0.5989386 prediction 0.438276685053754 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572649 chr16:67572650 synonymous SNV . 0 22 hm5C_associated_SNPs_120085 0 0 0 0 3 RIPOR1 chr16:67572563 3'AG 67572563 Downstream 88bp
chr16 67572650 67572650 1 + C T LGG 67572649 + 67572629 67572669 41 CCGAGTGTCCAGGATGTTTTCCGTGGCTCACCCAGCCGCCA CCGAGTGTCCAGGATGTTTTCTGTGGCTCACCCAGCCGCCA < 41bp 0.530938759887678 0.750077102414554 0.8784667 0.5989386 prediction 0.438276685053754 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572649 chr16:67572650 synonymous SNV . 0 22 hm5C_associated_SNPs_120085 0 0 0 0 3 RIPOR1 chr16:67572575 3'AG 67572575 Downstream 76bp
chr16 67572650 67572650 1 + C T LGG 67572649 + 67572629 67572669 41 CCGAGTGTCCAGGATGTTTTCCGTGGCTCACCCAGCCGCCA CCGAGTGTCCAGGATGTTTTCTGTGGCTCACCCAGCCGCCA < 41bp 0.530938759887678 0.750077102414554 0.8784667 0.5989386 prediction 0.438276685053754 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572649 chr16:67572650 synonymous SNV . 0 22 hm5C_associated_SNPs_120085 0 0 0 0 3 RIPOR1 chr16:67572727 5'GT 67572727 Upstream 78bp
chr19 17899086 17899086 1 + C A rs367772964 17899085 + 17899065 17899105 41 CCTCCCCCTCACAGCTGCACCCCCACAGGGATGTACCTGGT CCTCCCCCTCACAGCTGCACCACCACAGGGATGTACCTGGT < 41bp 0.469758358348605 0.719130199680608 0.0077228844 0.042325586 prediction 0.438260399361216 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17899085 chr19:17899086 synonymous SNV . 0 22 hm5C_associated_SNPs_120088 0 0 0 0 1 FCHO1 chr19:17899079 3'AG 17899079 Downstream 8bp
chr14 23311716 23311716 1 + C T GBM 23311715 + 23311695 23311735 41 AGTGCCACACCACTGCGCTTCCGCGAGGTGCCCTATGCCTA AGTGCCACACCACTGCGCTTCTGCGAGGTGCCCTATGCCTA < 41bp 0.459914477885956 0.719112825941316 0.06247884 0.039134383 prediction 0.438225651882631 Functional Gain - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23311715 chr14:23311716 nonsynonymous SNV 0.987 4 22 hm5C_associated_SNPs_120093 0 0 0 0 1 MMP14 chr14:23311619 3'AG 23311619 Downstream 98bp
chr15 69682054 69682054 1 + T G HNSC 69682052 + 69682032 69682072 41 CGCTCATGTGCACCACTTTCCATGACTACTACGTGGCCCTG CGCTCATGTGCACCACTTTCCAGGACTACTACGTGGCCCTG < 41bp 0.69944941783676 0.918560530453226 0.10061109 0.8724134 prediction 0.438222225232932 Functional Gain - PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69682052 chr15:69682054 nonsynonymous SNV 0.076 2 23 hm5C_associated_SNPs_120094 0 0 0 0 2 PAQR5 chr15:69681993 3'AG 69681993 Downstream 62bp
chr15 69682054 69682054 1 + T G HNSC 69682052 + 69682032 69682072 41 CGCTCATGTGCACCACTTTCCATGACTACTACGTGGCCCTG CGCTCATGTGCACCACTTTCCAGGACTACTACGTGGCCCTG < 41bp 0.69944941783676 0.918560530453226 0.10061109 0.8724134 prediction 0.438222225232932 Functional Gain - PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69682052 chr15:69682054 nonsynonymous SNV 0.076 2 23 hm5C_associated_SNPs_120094 0 0 0 0 2 PAQR5 chr15:69682119 5'GT 69682119 Upstream 66bp
chr9 116770806 116770806 1 + C T SKCM 116770805 + 116770785 116770825 41 GGACGAGGTGAAGGAGGAGCCCCCGGAGCCATTCCAGAAAA GGACGAGGTGAAGGAGGAGCCTCCGGAGCCATTCCAGAAAA < 41bp 0.45080762949513 0.719108693374062 0.8413323 0.895233 prediction 0.438217386748124 Functional Gain - ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116770805 chr9:116770806 synonymous SNV . 0 22 hm5C_associated_SNPs_120096 0 0 1 0 2 ZNF618 chr9:116770757 3'AG 116770757 Downstream 50bp
chr9 116770806 116770806 1 + C T SKCM 116770805 + 116770785 116770825 41 GGACGAGGTGAAGGAGGAGCCCCCGGAGCCATTCCAGAAAA GGACGAGGTGAAGGAGGAGCCTCCGGAGCCATTCCAGAAAA < 41bp 0.45080762949513 0.719108693374062 0.8413323 0.895233 prediction 0.438217386748124 Functional Gain - ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116770805 chr9:116770806 synonymous SNV . 0 22 hm5C_associated_SNPs_120096 0 0 1 0 2 ZNF618 chr9:116770834 5'GT 116770834 Upstream 29bp
chr15 65943251 65943251 1 + T C rs146253044 65943248 + 65943228 65943268 41 TTCTGCCCATCGTGTTCCCACTGTGGCTGACAGTCCCCGAC TTCTGCCCATCGTGTTCCCACTGCGGCTGACAGTCCCCGAC < 41bp 0.5149838895394 0.73409224868677 0.11363831 0.1778008 prediction 0.43821671829474 Functional Gain - SLC24A1 ENSG00000074621 CDS Human protein_coding chr15:65943248 chr15:65943251 nonsynonymous SNV 0.981 2 24 hm5C_associated_SNPs_120097 1 0 0 0 1 SLC24A1 chr15:65943280 5'GT 65943280 Upstream 30bp
chr22 41605899 41605899 1 - G A OV 41605900 - 41605880 41605920 41 CCATCCAAGGAGCGAGGAGTCCCAGGGCTGAGCAAATGCAG CCATCCAAGGAGCGAGGAGTCTCAGGGCTGAGCAAATGCAG < 41bp 0.539352860912831 0.758460327301374 0.3430242 0.36021903 prediction 0.438214932777087 Functional Gain - L3MBTL2 ENSG00000100395 CDS Human antisense chr22:41605900 chr22:41605899 nonsynonymous SNV 0.433 1 22 hm5C_associated_SNPs_120098 0 0 0 0 1 L3MBTL2 chr22:41605955 3'AG 41605955 Downstream 57bp
chr10 75557714 75557714 1 + C T LUAD 75557713 + 75557693 75557733 41 GGGGGCCACCAGGGTCCTCACCGCAACCTGCACCTTTGCGC GGGGGCCACCAGGGTCCTCACTGCAACCTGCACCTTTGCGC < 41bp 0.613871644215391 0.832969913927378 0.54047406 0.41368192 prediction 0.438196539423973 Functional Gain - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75557713 chr10:75557714 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_120100 0 0 1 2 1 ZSWIM8 chr10:75557694 3'AG 75557694 Downstream 21bp
chr19 42827820 42827820 1 + C A LUAD 42827819 + 42827799 42827839 41 CTTCAGCCGGAGTCCCTGGACCCGGAGGGAGCCAATCCGCT CTTCAGCCGGAGTCCCTGGACACGGAGGGAGCCAATCCGCT < 41bp 0.597509170910534 0.816600934085668 0.31553715 0.3273632 prediction 0.438183526350267 Functional Gain - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42827819 chr19:42827820 nonsynonymous SNV 0.182 1 22 hm5C_associated_SNPs_120102 0 0 1 0 1 TMEM145 chr19:42827735 3'AG 42827735 Downstream 86bp
chr12 111078279 111078279 1 + T C UCEC 111078277 + 111078257 111078297 41 GATGTGCTGCAGCCGACTCTCGTCAACGCTGGACACTTTAG GATGTGCTGCAGCCGACTCTCGCCAACGCTGGACACTTTAG < 41bp 0.606868290847009 0.825959919828796 0.16931981 0.42052954 prediction 0.438183257963573 Functional Gain - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111078277 chr12:111078279 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_120103 0 0 0 1 2 TCTN1 chr12:111078188 3'AG 111078188 Downstream 92bp
chr12 111078279 111078279 1 + T C UCEC 111078277 + 111078257 111078297 41 GATGTGCTGCAGCCGACTCTCGTCAACGCTGGACACTTTAG GATGTGCTGCAGCCGACTCTCGCCAACGCTGGACACTTTAG < 41bp 0.606868290847009 0.825959919828796 0.16931981 0.42052954 prediction 0.438183257963573 Functional Gain - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111078277 chr12:111078279 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_120103 0 0 0 1 2 TCTN1 chr12:111078322 5'GT 111078322 Upstream 44bp
chr6 90143019 90143019 1 + C A rs547941936 90143018 + 90142998 90143038 41 GAGCCAGCGGGAGCCAGTCCCCGTCTTCGCCCCTCGCCCCC GAGCCAGCGGGAGCCAGTCCCAGTCTTCGCCCCTCGCCCCC < 41bp 0.503296816577494 0.722380189569032 0.13469982 0.33128342 prediction 0.438166745983077 Functional Gain - ANKRD6 ENSG00000135299 UTR5 Human protein_coding chr6:90143018 chr6:90143019 . . 0 22 hm5C_associated_SNPs_120105 0 0 0 0 1 ANKRD6 chr6:90143094 5'GT 90143094 Upstream 76bp
chr11 64335280 64335280 1 + C T UCEC 64335279 + 64335259 64335299 41 TTCTAGCCAACATGCTGGTGCCGCAAGGTGAGGCAGGCGGA TTCTAGCCAACATGCTGGTGCTGCAAGGTGAGGCAGGCGGA < 41bp 0.524534346106455 0.743609232607162 0.5236829 0.37679082 prediction 0.438149773001414 Functional Gain - SLC22A11 ENSG00000168065 CDS Human protein_coding chr11:64335279 chr11:64335280 nonsynonymous SNV 0.826 2 22 hm5C_associated_SNPs_120113 0 0 0 0 1 SLC22A11 chr11:64335285 5'GT 64335285 Upstream 6bp
chr11 252595 252595 1 + A G STAD 252592 + 252572 252612 41 AGCACCAGGCCCATGACATCCTCACCTAGGGCCCCCTGGTT AGCACCAGGCCCATGACATCCTCGCCTAGGGCCCCCTGGTT < 41bp 0.476278055337324 0.719073656725578 0.060876995 0.15387642 prediction 0.438147313451157 Functional Gain - PSMD13 ENSG00000185627 CDS Human protein_coding chr11:252592 chr11:252595 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_120115 0 0 1 0 1 PSMD13 chr11:252505 3'AG 252505 Downstream 91bp
chr17 8248693 8248693 1 + C T SKCM 8248692 + 8248672 8248712 41 TTCTCCACCCTCATGCTATTCCCCATTAACATCTGGATCTT TTCTCCACCCTCATGCTATTCTCCATTAACATCTGGATCTT < 41bp 0.621686584125436 0.840758750921754 0.011478037 0.97225225 prediction 0.438144333592637 Functional Gain - ODF4 ENSG00000184650 CDS Human protein_coding chr17:8248692 chr17:8248693 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_120116 0 0 0 0 1 ODF4 chr17:8248661 3'AG 8248661 Downstream 33bp
chr10 99338069 99338069 1 + C A UCEC 99338068 + 99338048 99338088 41 GATGTGGGCGGGATCCAGAACCTCATCGAGCTGCGGAAGAA GATGTGGGCGGGATCCAGAACATCATCGAGCTGCGGAAGAA < 41bp 0.460462283579367 0.719071016454514 0.3163033 0.18763733 prediction 0.438142032909029 Functional Gain - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99338068 chr10:99338069 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_120117 0 0 0 0 2 ANKRD2 chr10:99337997 3'AG 99337997 Downstream 73bp
chr10 99338069 99338069 1 + C A UCEC 99338068 + 99338048 99338088 41 GATGTGGGCGGGATCCAGAACCTCATCGAGCTGCGGAAGAA GATGTGGGCGGGATCCAGAACATCATCGAGCTGCGGAAGAA < 41bp 0.460462283579367 0.719071016454514 0.3163033 0.18763733 prediction 0.438142032909029 Functional Gain - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99338068 chr10:99338069 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_120117 0 0 0 0 2 ANKRD2 chr10:99338155 5'GT 99338155 Upstream 87bp
chr6 26451962 26451962 1 + A G COAD 26451959 + 26451939 26451979 41 TCCTCCTTGTTTCTGAGGACCAGAGGAGTGTGCAGCGTGCT TCCTCCTTGTTTCTGAGGACCAGGGGAGTGTGCAGCGTGCT < 41bp 0.559617523224606 0.778686124533283 0.8093302 0.897897 prediction 0.438137202617356 Functional Gain - BTN3A3 ENSG00000111801 CDS Human protein_coding chr6:26451959 chr6:26451962 nonsynonymous SNV 0.066 2 24 hm5C_associated_SNPs_120120 0 0 0 0 1 BTN3A3 chr6:26451903 3'AG 26451903 Downstream 60bp
chr1 28858420 28858420 1 + C T UCEC 28858419 + 28858399 28858439 41 ATGTGATGGAGAGGAAGAAGCCGGCCCTGGTATCCATTCCG ATGTGATGGAGAGGAAGAAGCTGGCCCTGGTATCCATTCCG < 41bp 0.552922167531767 0.771988331960483 0.33643192 0.52678466 prediction 0.438132328857433 Functional Gain - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28858419 chr1:28858420 nonsynonymous SNV 0.948 3 22 hm5C_associated_SNPs_120122 0 0 1 0 1 RCC1 chr1:28858502 5'GT 28858502 Upstream 83bp
chr9 34977182 34977182 1 + C A SKCM 34977181 + 34977161 34977201 41 GTCAGTGAGGCAGAGTGCCGCCGGGCCCAGCACTCTTGGTT GTCAGTGAGGCAGAGTGCCGCAGGGCCCAGCACTCTTGGTT < 41bp 0.617406666521193 0.836469277393192 0.8792548 0.895719 prediction 0.438125221743999 Functional Gain - PHF24 ENSG00000122733 CDS Human protein_coding chr9:34977181 chr9:34977182 synonymous SNV . 0 22 hm5C_associated_SNPs_120123 0 0 0 0 1 PHF24 chr9:34977240 5'GT 34977240 Upstream 59bp
chr22 18065362 18065362 1 + A G LIHC 18065359 + 18065339 18065379 41 GAACCTCACTCTGGTCACTCCAGAGAAGGCCATCAAGCTGG GAACCTCACTCTGGTCACTCCAGGGAAGGCCATCAAGCTGG < 41bp 0.594137134111037 0.813186370357266 0.5782163 0.8923949 prediction 0.438098472492458 Functional Gain - SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18065359 chr22:18065362 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_120128 0 0 0 0 2 SLC25A18 chr22:18065329 3'AG 18065329 Downstream 34bp
chr22 18065362 18065362 1 + A G LIHC 18065359 + 18065339 18065379 41 GAACCTCACTCTGGTCACTCCAGAGAAGGCCATCAAGCTGG GAACCTCACTCTGGTCACTCCAGGGAAGGCCATCAAGCTGG < 41bp 0.594137134111037 0.813186370357266 0.5782163 0.8923949 prediction 0.438098472492458 Functional Gain - SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18065359 chr22:18065362 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_120128 0 0 0 0 2 SLC25A18 chr22:18065419 5'GT 18065419 Upstream 58bp
chr2 172823010 172823010 1 + C G LUAD 172823009 + 172822989 172823029 41 TCTATAATTACTATGTGTACCCAGACAAAACCCGGCCACGT TCTATAATTACTATGTGTACCGAGACAAAACCCGGCCACGT < 41bp 0.659195093067214 0.878240766503695 0.23404652 0.4978211 prediction 0.438091346872963 Functional Gain - HAT1 ENSG00000128708 CDS Human protein_coding chr2:172823009 chr2:172823010 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_120131 0 0 1 0 2 HAT1 chr2:172822930 3'AG 172822930 Downstream 81bp
chr2 172823010 172823010 1 + C G LUAD 172823009 + 172822989 172823029 41 TCTATAATTACTATGTGTACCCAGACAAAACCCGGCCACGT TCTATAATTACTATGTGTACCGAGACAAAACCCGGCCACGT < 41bp 0.659195093067214 0.878240766503695 0.23404652 0.4978211 prediction 0.438091346872963 Functional Gain - HAT1 ENSG00000128708 CDS Human protein_coding chr2:172823009 chr2:172823010 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_120131 0 0 1 0 2 HAT1 chr2:172823034 5'GT 172823034 Upstream 25bp
chr8 125579973 125579973 1 + C G rs6470251 125579972 + 125579952 125579992 41 ATCGAAGTGCCAAGTTGGGACCACGGGCCGGGCTAGAACGA ATCGAAGTGCCAAGTTGGGACGACGGGCCGGGCTAGAACGA < 41bp 0.413024655299202 0.71904556481961 0.09559038 0.15917164 prediction 0.43809112963922 Functional Gain - MTSS1 ENSG00000147684 CDS Human protein_coding chr8:125579972 chr8:125579973 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_120132 0 0 0 0 1 MTSS1 chr8:125579888 3'AG 125579888 Downstream 86bp
chr11 67075131 67075131 1 + C T rs57238619 67075130 + 67075110 67075150 41 CTACCAGGAGAGACTGAACTCCGAACAGAGCTGCCTCAATG CTACCAGGAGAGACTGAACTCTGAACAGAGCTGCCTCAATG < 41bp 0.594727631410777 0.813770516446377 0.33821738 0.22793949 prediction 0.438085770071199 Functional Gain - SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075130 chr11:67075131 synonymous SNV . 0 22 hm5C_associated_SNPs_120133 0 0 1 0 1 SSH3 chr11:67075208 5'GT 67075208 Upstream 78bp
chr20 45630110 45630110 1 + C T SKCM 45630109 + 45630089 45630129 41 GAGAGTGTCCCAGCTCTTCTCCAGGTGAGTGCCATTCACTT GAGAGTGTCCCAGCTCTTCTCTAGGTGAGTGCCATTCACTT < 41bp 0.525287171099814 0.744329320522467 0.9378068 0.7720698 prediction 0.438084298845306 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45630109 chr20:45630110 synonymous SNV . 0 22 hm5C_associated_SNPs_120134 0 0 0 0 2 EYA2 chr20:45630067 3'AG 45630067 Downstream 44bp
chr20 45630110 45630110 1 + C T SKCM 45630109 + 45630089 45630129 41 GAGAGTGTCCCAGCTCTTCTCCAGGTGAGTGCCATTCACTT GAGAGTGTCCCAGCTCTTCTCTAGGTGAGTGCCATTCACTT < 41bp 0.525287171099814 0.744329320522467 0.9378068 0.7720698 prediction 0.438084298845306 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45630109 chr20:45630110 synonymous SNV . 0 22 hm5C_associated_SNPs_120134 0 0 0 0 2 EYA2 chr20:45630112 5'GT 45630112 Upstream 3bp
chr1 109779081 109779081 1 + C T UCEC 109779080 + 109779060 109779100 41 TTTCCGGGCTCAGGAGCCTTCCGTGAGTTGGTCTCCTGTTC TTTCCGGGCTCAGGAGCCTTCTGTGAGTTGGTCTCCTGTTC < 41bp 0.51216021646281 0.731198083367167 0.90162075 0.8784069 prediction 0.438075733808713 Functional Gain - SARS ENSG00000031698 CDS Human protein_coding chr1:109779080 chr1:109779081 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_120138 0 0 1 0 2 SARS chr1:109779013 3'AG 109779013 Downstream 69bp
chr1 109779081 109779081 1 + C T UCEC 109779080 + 109779060 109779100 41 TTTCCGGGCTCAGGAGCCTTCCGTGAGTTGGTCTCCTGTTC TTTCCGGGCTCAGGAGCCTTCTGTGAGTTGGTCTCCTGTTC < 41bp 0.51216021646281 0.731198083367167 0.90162075 0.8784069 prediction 0.438075733808713 Functional Gain - SARS ENSG00000031698 CDS Human protein_coding chr1:109779080 chr1:109779081 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_120138 0 0 1 0 2 SARS chr1:109779170 5'GT 109779170 Upstream 90bp
chr3 125635655 125635655 1 + C A rs9841157 125635651 + 125635631 125635671 41 CCGTGCAGAAGCCCCCGACACGCCCGCCACGTGAGTGCCTG CCGTGCAGAAGCCCCCGACACGCCAGCCACGTGAGTGCCTG < 41bp 0.70619229498641 0.925229303545488 0.034104884 0.1725218 prediction 0.438074017118157 Functional Gain - FAM86JP ENSG00000171084 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:125635651 chr3:125635655 . . 0 25 hm5C_associated_SNPs_120139 0 0 0 0 1 FAM86JP chr3:125635660 5'GT 125635660 Upstream 6bp
chr17 73227514 73227514 1 + C A UCEC 73227510 + 73227490 73227530 41 TGCAAGCTCCTCCAGTCACACAACCTCTAGTAAGTGGCCGG TGCAAGCTCCTCCAGTCACACAACATCTAGTAAGTGGCCGG < 41bp 0.290379511577496 0.719036378363177 0.15987003 0.16373849 prediction 0.438072756726353 Functional Gain - NUP85 ENSG00000125450 CDS Human protein_coding chr17:73227510 chr17:73227514 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_120140 0 0 1 0 2 NUP85 chr17:73227435 3'AG 73227435 Downstream 80bp
chr17 73227514 73227514 1 + C A UCEC 73227510 + 73227490 73227530 41 TGCAAGCTCCTCCAGTCACACAACCTCTAGTAAGTGGCCGG TGCAAGCTCCTCCAGTCACACAACATCTAGTAAGTGGCCGG < 41bp 0.290379511577496 0.719036378363177 0.15987003 0.16373849 prediction 0.438072756726353 Functional Gain - NUP85 ENSG00000125450 CDS Human protein_coding chr17:73227510 chr17:73227514 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_120140 0 0 1 0 2 NUP85 chr17:73227518 5'GT 73227518 Upstream 5bp
chr22 51022064 51022064 1 + A G rs563974717 51022061 + 51022041 51022081 41 ACAGAGTCAAACCCAAGAGCCGAAGAAAGTGAAGACTCGCA ACAGAGTCAAACCCAAGAGCCGAGGAAAGTGAAGACTCGCA < 41bp 0.557391667073612 0.776424437264193 0.34394583 0.74964 prediction 0.438065540381162 Functional Gain - CHKB-AS1 ENSG00000205559 ncRNA_exonic Human antisense chr22:51022061 chr22:51022064 . . 0 24 hm5C_associated_SNPs_120141 0 0 0 0 1 CHKB-AS1 chr22:51022027 3'AG 51022027 Downstream 38bp
chr10 1061779 1061779 1 + C T SKCM 1061778 + 1061758 1061798 41 TGCTCCCCCGTCCTCTGTGGCCCGGAGTGGGAGTTGCTCTC TGCTCCCCCGTCCTCTGTGGCTCGGAGTGGGAGTTGCTCTC < 41bp 0.607987802832055 0.827017430186519 0.39975187 0.29208612 prediction 0.438059254708929 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1061778 chr10:1061779 synonymous SNV . 0 22 hm5C_associated_SNPs_120144 0 0 1 0 2 GTPBP4 chr10:1061693 3'AG 1061693 Downstream 87bp
chr10 1061779 1061779 1 + C T SKCM 1061778 + 1061758 1061798 41 TGCTCCCCCGTCCTCTGTGGCCCGGAGTGGGAGTTGCTCTC TGCTCCCCCGTCCTCTGTGGCTCGGAGTGGGAGTTGCTCTC < 41bp 0.607987802832055 0.827017430186519 0.39975187 0.29208612 prediction 0.438059254708929 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1061778 chr10:1061779 synonymous SNV . 0 22 hm5C_associated_SNPs_120144 0 0 1 0 2 GTPBP4 chr10:1061836 5'GT 1061836 Upstream 58bp
chr2 75099464 75099464 1 + T C LUAD 75099462 + 75099442 75099482 41 GCCGAATGCCTGGCTAACTTCATGGATAAGCTACAAATCAA GCCGAATGCCTGGCTAACTTCACGGATAAGCTACAAATCAA < 41bp 0.430314632096853 0.719029352107708 0.34373543 0.37596825 prediction 0.438058704215416 Functional Gain - HK2 ENSG00000159399 CDS Human protein_coding chr2:75099462 chr2:75099464 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_120145 0 0 1 0 2 HK2 chr2:75099427 3'AG 75099427 Downstream 38bp
chr2 75099464 75099464 1 + T C LUAD 75099462 + 75099442 75099482 41 GCCGAATGCCTGGCTAACTTCATGGATAAGCTACAAATCAA GCCGAATGCCTGGCTAACTTCACGGATAAGCTACAAATCAA < 41bp 0.430314632096853 0.719029352107708 0.34373543 0.37596825 prediction 0.438058704215416 Functional Gain - HK2 ENSG00000159399 CDS Human protein_coding chr2:75099462 chr2:75099464 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_120145 0 0 1 0 2 HK2 chr2:75099546 5'GT 75099546 Upstream 83bp
chr19 18092875 18092875 1 + C A PAAD 18092871 + 18092851 18092891 41 ATGACCATCTGCCCCGGCACCGTGCTGCTGGTCTTCAGCAT ATGACCATCTGCCCCGGCACCGTGATGCTGGTCTTCAGCAT < 41bp 0.313001034719976 0.719027181662916 0.10482025 0.22925267 prediction 0.438054363325832 Functional Gain - KCNN1 ENSG00000105642 CDS Human protein_coding chr19:18092871 chr19:18092875 nonsynonymous SNV 0.722 3 25 hm5C_associated_SNPs_120146 0 0 0 0 1 KCNN1 chr19:18092936 5'GT 18092936 Upstream 62bp
chr1 150936730 150936730 1 + C T COAD 150936729 + 150936709 150936749 41 TTCTTCCTCTTCAGAAGAATCCGGGCTGGGACAGAACTTAC TTCTTCCTCTTCAGAAGAATCTGGGCTGGGACAGAACTTAC < 41bp 0.558444026602489 0.777464232658604 0.8831846 0.86307293 prediction 0.438040412112229 Functional Gain - SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150936729 chr1:150936730 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_120148 0 0 0 0 2 SETDB1 chr1:150936723 3'AG 150936723 Downstream 8bp
chr1 150936730 150936730 1 + C T COAD 150936729 + 150936709 150936749 41 TTCTTCCTCTTCAGAAGAATCCGGGCTGGGACAGAACTTAC TTCTTCCTCTTCAGAAGAATCTGGGCTGGGACAGAACTTAC < 41bp 0.558444026602489 0.777464232658604 0.8831846 0.86307293 prediction 0.438040412112229 Functional Gain - SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150936729 chr1:150936730 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_120148 0 0 0 0 2 SETDB1 chr1:150936726 3'AG 150936726 Downstream 5bp
chr20 36488339 36488339 1 + C T STAD 36488338 + 36488318 36488358 41 AGAGATCATCGACAATGACACCGAGGAGGAGTTCTACCTCC AGAGATCATCGACAATGACACTGAGGAGGAGTTCTACCTCC < 41bp 0.552310407578842 0.771328270163755 0.30866677 0.33575696 prediction 0.438035725169825 Functional Gain - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488338 chr20:36488339 synonymous SNV . 0 22 hm5C_associated_SNPs_120149 0 0 1 6 2 CTNNBL1 chr20:36488301 3'AG 36488301 Downstream 39bp
chr20 36488339 36488339 1 + C T STAD 36488338 + 36488318 36488358 41 AGAGATCATCGACAATGACACCGAGGAGGAGTTCTACCTCC AGAGATCATCGACAATGACACTGAGGAGGAGTTCTACCTCC < 41bp 0.552310407578842 0.771328270163755 0.30866677 0.33575696 prediction 0.438035725169825 Functional Gain - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488338 chr20:36488339 synonymous SNV . 0 22 hm5C_associated_SNPs_120149 0 0 1 6 2 CTNNBL1 chr20:36488438 5'GT 36488438 Upstream 100bp
chrX 69455639 69455639 1 + C A STAD 69455638 + 69455618 69455658 41 GCTACCAGTGCTTTACTTTGCCTGGTTGTTCCTGGACTGGA GCTACCAGTGCTTTACTTTGCATGGTTGTTCCTGGACTGGA < 41bp 0.452896833762267 0.719016881661118 0.30013916 0.77100646 prediction 0.438033763322236 Functional Gain - AWAT1 ENSG00000204195 CDS Human protein_coding chrX:69455638 chrX:69455639 synonymous SNV . 0 22 hm5C_associated_SNPs_120150 0 0 0 0 2 AWAT1 chrX:69455566 3'AG 69455566 Downstream 74bp
chrX 69455639 69455639 1 + C A STAD 69455638 + 69455618 69455658 41 GCTACCAGTGCTTTACTTTGCCTGGTTGTTCCTGGACTGGA GCTACCAGTGCTTTACTTTGCATGGTTGTTCCTGGACTGGA < 41bp 0.452896833762267 0.719016881661118 0.30013916 0.77100646 prediction 0.438033763322236 Functional Gain - AWAT1 ENSG00000204195 CDS Human protein_coding chrX:69455638 chrX:69455639 synonymous SNV . 0 22 hm5C_associated_SNPs_120150 0 0 0 0 2 AWAT1 chrX:69455673 5'GT 69455673 Upstream 35bp
chr7 99123521 99123521 1 + C T GBM 99123520 + 99123500 99123540 41 CTGGGTGGCGCCAGAACACACCGAAAGGAGCGTTCCTCAGG CTGGGTGGCGCCAGAACACACTGAAAGGAGCGTTCCTCAGG < 41bp 0.57835957043117 0.797367095775859 0.2903442 0.36580417 prediction 0.438015050689379 Functional Gain - ZKSCAN5 ENSG00000196652 CDS Human protein_coding chr7:99123520 chr7:99123521 synonymous SNV . 0 22 hm5C_associated_SNPs_120154 0 0 1 0 1 ZKSCAN5 chr7:99123436 3'AG 99123436 Downstream 86bp
chr19 10893735 10893735 1 + C A rs3745674 10893731 + 10893711 10893751 41 AGAGGAAGTTCTTCCTCTCCCACCCGGCCTACCGGCACATG AGAGGAAGTTCTTCCTCTCCCACCAGGCCTACCGGCACATG < 41bp 0.32349258771053 0.719007350709477 0.06529385 0.14332658 prediction 0.438014701418953 Functional Gain - DNM2 ENSG00000079805 CDS Human protein_coding chr19:10893731 chr19:10893735 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_120155 0 0 1 0 1 DNM2 chr19:10893796 5'GT 10893796 Upstream 62bp
chr2 61343153 61343153 1 + A G STAD 61343150 + 61343130 61343170 41 AAAGAAGTTCACTAGACAACCAAAAAAGCAGGTATCTTCAC AAAGAAGTTCACTAGACAACCAAGAAAGCAGGTATCTTCAC < 41bp 0.521258987104019 0.740260156975063 0.23434174 0.51953334 prediction 0.438002339742088 Functional Gain - KIAA1841 ENSG00000162929 CDS Human protein_coding chr2:61343150 chr2:61343153 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_120157 0 0 1 0 2 KIAA1841 chr2:61343114 3'AG 61343114 Downstream 40bp
chr2 61343153 61343153 1 + A G STAD 61343150 + 61343130 61343170 41 AAAGAAGTTCACTAGACAACCAAAAAAGCAGGTATCTTCAC AAAGAAGTTCACTAGACAACCAAGAAAGCAGGTATCTTCAC < 41bp 0.521258987104019 0.740260156975063 0.23434174 0.51953334 prediction 0.438002339742088 Functional Gain - KIAA1841 ENSG00000162929 CDS Human protein_coding chr2:61343150 chr2:61343153 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_120157 0 0 1 0 2 KIAA1841 chr2:61343205 5'GT 61343205 Upstream 53bp
chr15 90119409 90119409 1 + C T SKCM 90119408 + 90119388 90119428 41 AAGTTGTTGCCCAAGAGAGTCCGGGAAGTCATGGTCGCCCG AAGTTGTTGCCCAAGAGAGTCTGGGAAGTCATGGTCGCCCG < 41bp 0.518705109504773 0.737693135452258 0.39860418 0.7679744 prediction 0.437976051894969 Functional Gain - TICRR ENSG00000140534 CDS Human protein_coding chr15:90119408 chr15:90119409 nonsynonymous SNV 0.887 1 22 hm5C_associated_SNPs_120160 0 0 1 0 1 TICRR chr15:90119471 5'GT 90119471 Upstream 63bp
chr2 113346508 113346508 1 + C A rs201419705 113346504 + 113346484 113346524 41 GGAAAACTGGACATGAATGACTGCCCCCACGCCCCTCCCCT GGAAAACTGGACATGAATGACTGCACCCACGCCCCTCCCCT < 41bp 0.692824684975245 0.911812546912508 0.014166683 0.04270339 prediction 0.437975723874527 Functional Gain - CHCHD5 ENSG00000125611 UTR3 Human protein_coding chr2:113346504 chr2:113346508 . . 0 25 hm5C_associated_SNPs_120161 0 0 1 0 1 CHCHD5 chr2:113346443 3'AG 113346443 Downstream 66bp
chr1 50661259 50661259 1 + C T STAD 50661258 + 50661238 50661278 41 TCCAGAGGGGTGGGATTCATCCGCTTTGATAAGAGGATTGA TCCAGAGGGGTGGGATTCATCTGCTTTGATAAGAGGATTGA < 41bp 0.580898925915979 0.799877281567576 0.37734187 0.3855517 prediction 0.437956711303193 Functional Gain - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50661258 chr1:50661259 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_120165 0 0 0 0 1 ELAVL4 chr1:50661233 3'AG 50661233 Downstream 27bp
chr14 68195937 68195937 1 + C G LIHC 68195936 + 68195916 68195956 41 GTCACCACCTACGCAGTGCACCCAGGCGTCGTCCGCTCTGA GTCACCACCTACGCAGTGCACGCAGGCGTCGTCCGCTCTGA < 41bp 0.671848257413706 0.890818260002386 0.06849432 0.2443386 prediction 0.43794000517736 Functional Gain - RDH12 ENSG00000139988 CDS Human protein_coding chr14:68195936 chr14:68195937 nonsynonymous SNV 0.436 5 22 hm5C_associated_SNPs_120168 1 0 0 0 1 RDH12 chr14:68195908 3'AG 68195908 Downstream 30bp
chrX 152085867 152085867 1 + C T SKCM 152085866 + 152085846 152085886 41 CCATAGACAGCTCTTCCCAGCCCCAGCAGCAGTTCCCCAAG CCATAGACAGCTCTTCCCAGCTCCAGCAGCAGTTCCCCAAG < 41bp 0.451330052787374 0.718966744666934 0.0152486265 0.45336252 prediction 0.437933489333869 Functional Gain - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152085866 chrX:152085867 nonsynonymous SNV 0.059 2 22 hm5C_associated_SNPs_120169 0 0 0 0 2 ZNF185 chrX:152085829 3'AG 152085829 Downstream 39bp
chrX 152085867 152085867 1 + C T SKCM 152085866 + 152085846 152085886 41 CCATAGACAGCTCTTCCCAGCCCCAGCAGCAGTTCCCCAAG CCATAGACAGCTCTTCCCAGCTCCAGCAGCAGTTCCCCAAG < 41bp 0.451330052787374 0.718966744666934 0.0152486265 0.45336252 prediction 0.437933489333869 Functional Gain - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152085866 chrX:152085867 nonsynonymous SNV 0.059 2 22 hm5C_associated_SNPs_120169 0 0 0 0 2 ZNF185 chrX:152085906 5'GT 152085906 Upstream 40bp
chr12 8995883 8995883 1 + C T COAD 8995882 + 8995862 8995902 41 CCCTTGAAATGTGGCCAGCCCCAGGAAGTGCTGGTGGATTA CCCTTGAAATGTGGCCAGCCCTAGGAAGTGCTGGTGGATTA < 41bp 0.463013275831626 0.718964585253857 0.3139533 0.17721078 prediction 0.437929170507715 Functional Gain - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:8995882 chr12:8995883 stopgain 0.996 1 22 hm5C_associated_SNPs_120171 0 0 0 0 1 A2ML1 chr12:8995957 5'GT 8995957 Upstream 75bp
chr19 38684410 38684410 1 + C T LUSC 38684409 + 38684389 38684429 41 TGCCGCCGGCAGCGGCTTTCCCGAGAAGAAATGTGAGCCTG TGCCGCCGGCAGCGGCTTTCCTGAGAAGAAATGTGAGCCTG < 41bp 0.516845288102681 0.735807946619929 0.79594064 0.7733793 prediction 0.437925317034496 Functional Gain - SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38684409 chr19:38684410 synonymous SNV . 0 22 hm5C_associated_SNPs_120173 0 0 0 0 1 SIPA1L3 chr19:38684420 5'GT 38684420 Upstream 11bp
chr4 4862084 4862084 1 + C A rs104893854 4862083 + 4862063 4862103 41 TGCAGAGCCCCCGCTTCTCCCCGCCGCCGGCCAGTGAGTAG TGCAGAGCCCCCGCTTCTCCCAGCCGCCGGCCAGTGAGTAG < 41bp 0.465433811779995 0.718962206755972 0.16248277 0.28197098 prediction 0.437924413511944 Functional Gain - MSX1 ENSG00000163132 CDS Human protein_coding chr4:4862083 chr4:4862084 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_120174 1 0 0 0 1 MSX1 chr4:4862095 5'GT 4862095 Upstream 12bp
chr14 100995422 100995422 1 + C T HNSC 100995421 + 100995401 100995441 41 TCAGGAGAGGTTCACCTGCCCCAGCCTCGCCTTGCACCCGA TCAGGAGAGGTTCACCTGCCCTAGCCTCGCCTTGCACCCGA < 41bp 0.472913811641351 0.718961868746243 0.16458857 0.29667652 prediction 0.437923737492485 Functional Gain - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100995421 chr14:100995422 synonymous SNV . 0 22 hm5C_associated_SNPs_120175 0 0 0 0 1 WDR25 chr14:100995405 3'AG 100995405 Downstream 18bp
chr3 38153226 38153226 1 + C A BLCA 38153222 + 38153202 38153242 41 CGGATGCAAGAGCACCTGGCCAAGCGAGAGCAGCTGGGTAA CGGATGCAAGAGCACCTGGCCAAGAGAGAGCAGCTGGGTAA < 41bp 0.317761531384009 0.718961813792189 0.5573129 0.65104246 prediction 0.437923627584378 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38153222 chr3:38153226 synonymous SNV . 0 25 hm5C_associated_SNPs_120176 0 0 0 0 2 DLEC1 chr3:38153168 3'AG 38153168 Downstream 59bp
chr3 38153226 38153226 1 + C A BLCA 38153222 + 38153202 38153242 41 CGGATGCAAGAGCACCTGGCCAAGCGAGAGCAGCTGGGTAA CGGATGCAAGAGCACCTGGCCAAGAGAGAGCAGCTGGGTAA < 41bp 0.317761531384009 0.718961813792189 0.5573129 0.65104246 prediction 0.437923627584378 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38153222 chr3:38153226 synonymous SNV . 0 25 hm5C_associated_SNPs_120176 0 0 0 0 2 DLEC1 chr3:38153238 5'GT 38153238 Upstream 13bp
chr3 51696508 51696508 1 + C T OV 51696507 + 51696487 51696527 41 GTGCCTCATCACCCAAAGCCCCCGACCCTGAGGGGCTGGCC GTGCCTCATCACCCAAAGCCCTCGACCCTGAGGGGCTGGCC < 41bp 0.448388248526643 0.718953650627463 0.10901436 0.31398088 prediction 0.437907301254925 Functional Gain - RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51696507 chr3:51696508 nonsynonymous SNV 0.987 1 22 hm5C_associated_SNPs_120179 0 0 0 0 1 RAD54L2 chr3:51696442 3'AG 51696442 Downstream 67bp
chr6 43268928 43268928 1 + C T UCEC 43268927 + 43268907 43268947 41 CAAGGCCATGTGAAAGAGGCCCACAGGTACTTGCTCCACTG CAAGGCCATGTGAAAGAGGCCTACAGGTACTTGCTCCACTG < 41bp 0.451423043761656 0.718934472689883 0.1438649 0.4320733 prediction 0.437868945379767 Functional Gain - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43268927 chr6:43268928 nonsynonymous SNV 0.982 0 22 hm5C_associated_SNPs_120188 0 0 0 0 2 SLC22A7 chr6:43268873 3'AG 43268873 Downstream 56bp
chr6 43268928 43268928 1 + C T UCEC 43268927 + 43268907 43268947 41 CAAGGCCATGTGAAAGAGGCCCACAGGTACTTGCTCCACTG CAAGGCCATGTGAAAGAGGCCTACAGGTACTTGCTCCACTG < 41bp 0.451423043761656 0.718934472689883 0.1438649 0.4320733 prediction 0.437868945379767 Functional Gain - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43268927 chr6:43268928 nonsynonymous SNV 0.982 0 22 hm5C_associated_SNPs_120188 0 0 0 0 2 SLC22A7 chr6:43268996 5'GT 43268996 Upstream 69bp
chr1 119927403 119927403 1 + C A UCEC 119927399 + 119927379 119927419 41 TCATGTCCTTTGCTTTACAGCTGCCCAAGCGGCTGGTATCT TCATGTCCTTTGCTTTACAGCTGCACAAGCGGCTGGTATCT < 41bp 0.311146582968328 0.718929795693022 0.091213286 0.08387458 prediction 0.437859591386044 Functional Gain - HAO2 ENSG00000116882 CDS Human protein_coding chr1:119927399 chr1:119927403 synonymous SNV . 0 25 hm5C_associated_SNPs_120191 0 0 0 0 1 HAO2 chr1:119927399 3'AG 119927399 Downstream 5bp
chr16 77822803 77822803 1 + T C rs148283809 77822801 + 77822781 77822821 41 GACGGCGAGCTCAAGATCCGCGTCAAAGCCTGGTCCAGTAT GACGGCGAGCTCAAGATCCGCGCCAAAGCCTGGTCCAGTAT < 41bp 0.45800633082456 0.718925127186042 0.42078504 0.3212735 prediction 0.437850254372085 Functional Gain - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77822801 chr16:77822803 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_120192 0 0 0 0 1 VAT1L chr16:77822812 5'GT 77822812 Upstream 10bp
chr17 79770838 79770838 1 + C T rs369334314 79770837 + 79770817 79770857 41 TCCAGGTGCCCGCCCGCCCGCCGGCTCCCCCGCCCGGGGCG TCCAGGTGCCCGCCCGCCCGCTGGCTCCCCCGCCCGGGGCG < 41bp 0.488462728928913 0.718914640835616 0.18910745 0.20479178 prediction 0.437829281671233 Functional Gain - GCGR ENSG00000215644 CDS Human protein_coding chr17:79770837 chr17:79770838 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_120194 0 0 0 0 1 GCGR chr17:79770933 5'GT 79770933 Upstream 96bp
chr10 75673396 75673396 1 + T C UVM 75673394 + 75673374 75673414 41 ATTGGGGGAGAATTCACCACCATCGAGAACCAGCCCTGGTT ATTGGGGGAGAATTCACCACCACCGAGAACCAGCCCTGGTT < 41bp 0.444678345312399 0.718908280551409 0.05479127 0.1172083 prediction 0.437816561102818 Functional Gain - PLAU ENSG00000122861 CDS Human protein_coding chr10:75673394 chr10:75673396 nonsynonymous SNV 0.924 2 23 hm5C_associated_SNPs_120198 0 0 0 0 1 PLAU chr10:75673297 3'AG 75673297 Downstream 100bp
chr16 29820932 29820932 1 + C T SKCM 29820931 + 29820911 29820951 41 CTCCAGGCCCCGCGGGCTGACCGCATCCTGTGCAAGCTGTG CTCCAGGCCCCGCGGGCTGACTGCATCCTGTGCAAGCTGTG < 41bp 0.588864524974882 0.807771528588477 0.09183225 0.18300933 prediction 0.437814007227191 Functional Gain - MAZ ENSG00000103495 CDS Human protein_coding chr16:29820931 chr16:29820932 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_120199 0 0 1 0 1 MAZ chr16:29820861 3'AG 29820861 Downstream 72bp
chr11 59562950 59562950 1 + C A rs142968661 59562949 + 59562929 59562969 41 GTGAAATACCAGAGTCAGGCCCGGAAGGTGAGACTCTCCTG GTGAAATACCAGAGTCAGGCCAGGAAGGTGAGACTCTCCTG < 41bp 0.605074899761326 0.823978877825116 0.33297002 0.5777963 prediction 0.437807956127581 Functional Gain - STX3 ENSG00000166900 CDS Human protein_coding chr11:59562949 chr11:59562950 synonymous SNV . 0 22 hm5C_associated_SNPs_120200 0 0 1 0 1 STX3 chr11:59562955 5'GT 59562955 Upstream 6bp
chr18 39575890 39575890 1 + C T STAD 39575889 + 39575869 39575909 41 AGCAAACACCACAAGCTTGCCCGGAGTTTAAGAAGTGGACC AGCAAACACCACAAGCTTGCCTGGAGTTTAAGAAGTGGACC < 41bp 0.527569487589323 0.746466903794802 0.27678424 0.13962537 prediction 0.437794832410958 Functional Gain - PIK3C3 ENSG00000078142 CDS Human protein_coding chr18:39575889 chr18:39575890 nonsynonymous SNV 0.991 4 22 hm5C_associated_SNPs_120204 0 0 1 0 2 PIK3C3 chr18:39575854 3'AG 39575854 Downstream 37bp
chr18 39575890 39575890 1 + C T STAD 39575889 + 39575869 39575909 41 AGCAAACACCACAAGCTTGCCCGGAGTTTAAGAAGTGGACC AGCAAACACCACAAGCTTGCCTGGAGTTTAAGAAGTGGACC < 41bp 0.527569487589323 0.746466903794802 0.27678424 0.13962537 prediction 0.437794832410958 Functional Gain - PIK3C3 ENSG00000078142 CDS Human protein_coding chr18:39575889 chr18:39575890 nonsynonymous SNV 0.991 4 22 hm5C_associated_SNPs_120204 0 0 1 0 2 PIK3C3 chr18:39575958 5'GT 39575958 Upstream 69bp
chr13 98086962 98086962 1 + C G GBM 98086961 + 98086941 98086981 41 AAGAACGGCCAGGGCTTCATCCTCGTCTACAGCCTCGTCAA AAGAACGGCCAGGGCTTCATCGTCGTCTACAGCCTCGTCAA < 41bp 0.414243423027647 0.718894381173254 0.06954911 0.36859453 prediction 0.437788762346508 Functional Gain - RAP2A ENSG00000125249 CDS Human protein_coding chr13:98086961 chr13:98086962 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_120205 0 0 1 0 1 RAP2A chr13:98087038 5'GT 98087038 Upstream 77bp
chr8 67417691 67417691 1 + C T UCEC 67417690 + 67417670 67417710 41 GACCGCAGGGACCCTGGCGACCGCCGCAGGTTTGGGCGGCT GACCGCAGGGACCCTGGCGACTGCCGCAGGTTTGGGCGGCT < 41bp 0.490602130527001 0.718891331204423 0.5752592 0.57575303 prediction 0.437782662408845 Functional Gain - C8orf46 ENSG00000169085 CDS Human protein_coding chr8:67417690 chr8:67417691 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_120206 0 0 0 0 2 C8orf46 chr8:67417610 3'AG 67417610 Downstream 82bp
chr8 67417691 67417691 1 + C T UCEC 67417690 + 67417670 67417710 41 GACCGCAGGGACCCTGGCGACCGCCGCAGGTTTGGGCGGCT GACCGCAGGGACCCTGGCGACTGCCGCAGGTTTGGGCGGCT < 41bp 0.490602130527001 0.718891331204423 0.5752592 0.57575303 prediction 0.437782662408845 Functional Gain - C8orf46 ENSG00000169085 CDS Human protein_coding chr8:67417690 chr8:67417691 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_120206 0 0 0 0 2 C8orf46 chr8:67417763 5'GT 67417763 Upstream 73bp
chr8 22462346 22462346 1 + T G rs11555543 22462344 + 22462324 22462364 41 TGTCCCCCCGGTGTCGCTGCCCTGGCCCGCAGGTGGGTTGG TGTCCCCCCGGTGTCGCTGCCCGGGCCCGCAGGTGGGTTGG < 41bp 0.351330119511287 0.718889490331338 0.22437689 0.8772368 prediction 0.437778980662676 Functional Gain - CCAR2;C8orf58 ENSG00000158941 CDS Human protein_coding chr8:22462344 chr8:22462346 unknown . 0 23 hm5C_associated_SNPs_120209 0 0 1 0 1 CCAR2;C8orf58 chr8:22462355 5'GT 22462355 Upstream 10bp
chr3 119534285 119534285 1 + A G BLCA 119534282 + 119534262 119534302 41 CAGGCCATCTCCCTCTTCTCCCCAGGTGAGGATCTCCCCTA CAGGCCATCTCCCTCTTCTCCCCGGGTGAGGATCTCCCCTA < 41bp 0.466089098702183 0.718889101692021 0.84735835 0.92455685 prediction 0.437778203384042 Functional Gain - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119534282 chr3:119534285 synonymous SNV . 0 24 hm5C_associated_SNPs_120210 0 0 1 0 1 NR1I2 chr3:119534286 5'GT 119534286 Upstream 2bp
chrX 17153511 17153511 1 + C T STAD 17153510 + 17153490 17153530 41 CTTCTGCGGCAACCATGAAACCGCATCCAACAGTCCAAAAG CTTCTGCGGCAACCATGAAACTGCATCCAACAGTCCAAAAG < 41bp 0.461965204896969 0.718876251477225 0.16983572 0.15325007 prediction 0.43775250295445 Functional Gain - REPS2 ENSG00000169891 CDS Human protein_coding chrX:17153510 chrX:17153511 nonsynonymous SNV 0.013 2 22 hm5C_associated_SNPs_120213 0 0 0 0 1 REPS2 chrX:17153529 5'GT 17153529 Upstream 19bp
chr11 118951977 118951977 1 + C T UCEC 118951976 + 118951956 118951996 41 CGGAAGGTCATGGATATGATCCGGGCCCAGGAACAGAAACG CGGAAGGTCATGGATATGATCTGGGCCCAGGAACAGAAACG < 41bp 0.490444984136403 0.718861756807392 0.41351432 0.21660304 prediction 0.437723513614783 Functional Gain - VPS11 ENSG00000160695 CDS Human protein_coding chr11:118951976 chr11:118951977 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_120215 0 0 1 0 1 VPS11 chr11:118952024 5'GT 118952024 Upstream 48bp
chr9 139818415 139818415 1 + C T COAD 139818414 + 139818394 139818434 41 TCTTTGTGGTGATGAAGGGCCCGAATGACGCCCTGCTGCGG TCTTTGTGGTGATGAAGGGCCTGAATGACGCCCTGCTGCGG < 41bp 0.591409839943325 0.810270738807036 0.050697535 0.05681947 prediction 0.437721797727421 Functional Gain - TRAF2 ENSG00000127191 CDS Human protein_coding chr9:139818414 chr9:139818415 nonsynonymous SNV 0.629 1 22 hm5C_associated_SNPs_120216 0 0 1 0 1 TRAF2 chr9:139818452 5'GT 139818452 Upstream 38bp
chr20 25187795 25187795 1 + C T SKCM 25187794 + 25187774 25187814 41 GGTGGCGAAGGTGGCATACCCCCTGGGGCTGTGTGTGGGCG GGTGGCGAAGGTGGCATACCCTCTGGGGCTGTGTGTGGGCG < 41bp 0.572260987540021 0.791116708216006 0.11840513 0.11456519 prediction 0.437711441351971 Functional Gain - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25187794 chr20:25187795 synonymous SNV . 0 22 hm5C_associated_SNPs_120221 0 0 1 0 2 ENTPD6 chr20:25187712 3'AG 25187712 Downstream 84bp
chr20 25187795 25187795 1 + C T SKCM 25187794 + 25187774 25187814 41 GGTGGCGAAGGTGGCATACCCCCTGGGGCTGTGTGTGGGCG GGTGGCGAAGGTGGCATACCCTCTGGGGCTGTGTGTGGGCG < 41bp 0.572260987540021 0.791116708216006 0.11840513 0.11456519 prediction 0.437711441351971 Functional Gain - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25187794 chr20:25187795 synonymous SNV . 0 22 hm5C_associated_SNPs_120221 0 0 1 0 2 ENTPD6 chr20:25187715 3'AG 25187715 Downstream 81bp
chr12 7463290 7463290 1 + C A LUSC 7463289 + 7463269 7463309 41 CCTGACCTTAAGACAAAACTCCTGGTGTCTCCACAAAGCTG CCTGACCTTAAGACAAAACTCATGGTGTCTCCACAAAGCTG < 41bp 0.441228917848234 0.71884346099912 0.41279396 0.5895517 prediction 0.43768692199824 Functional Gain - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7463289 chr12:7463290 nonsynonymous SNV 0.990 2 22 hm5C_associated_SNPs_120225 0 0 0 0 1 ACSM4 chr12:7463342 5'GT 7463342 Upstream 53bp
chr16 74336135 74336135 1 + C T UCEC 74336134 + 74336114 74336154 41 TGGTCATCATTGATGTGAAGCCGAAGGACCTAGGGCTGCCT TGGTCATCATTGATGTGAAGCTGAAGGACCTAGGGCTGCCT < 41bp 0.46452538462884 0.718842693298359 0.4481359 0.4057411 prediction 0.437685386596717 Functional Gain - PSMD7 ENSG00000103035 CDS Human protein_coding chr16:74336134 chr16:74336135 nonsynonymous SNV 0.973 2 22 hm5C_associated_SNPs_120226 0 0 1 0 2 PSMD7 chr16:74336110 3'AG 74336110 Downstream 26bp
chr16 74336135 74336135 1 + C T UCEC 74336134 + 74336114 74336154 41 TGGTCATCATTGATGTGAAGCCGAAGGACCTAGGGCTGCCT TGGTCATCATTGATGTGAAGCTGAAGGACCTAGGGCTGCCT < 41bp 0.46452538462884 0.718842693298359 0.4481359 0.4057411 prediction 0.437685386596717 Functional Gain - PSMD7 ENSG00000103035 CDS Human protein_coding chr16:74336134 chr16:74336135 nonsynonymous SNV 0.973 2 22 hm5C_associated_SNPs_120226 0 0 1 0 2 PSMD7 chr16:74336190 5'GT 74336190 Upstream 56bp
chr14 78365584 78365584 1 + C G KIRC 78365580 + 78365560 78365600 41 GAGAAGGTGTCCCAGATGCTCAGGCATTTTGACTTCTTGAA GAGAAGGTGTCCCAGATGCTCAGGGATTTTGACTTCTTGAA < 41bp 0.414325613404883 0.718839467090602 0.88550895 0.90018415 prediction 0.437678934181204 Functional Gain - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78365580 chr14:78365584 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_120229 0 0 0 0 1 ADCK1 chr14:78365601 5'GT 78365601 Upstream 18bp
chr7 36193266 36193266 1 + C G rs142018965 36193262 + 36193242 36193282 41 GCAGGTGGAAGAGGAACCGGCGCCCCGCAGAGCGGCCGAGA GCAGGTGGAAGAGGAACCGGCGCCGCGCAGAGCGGCCGAGA < 41bp 0.473625311582136 0.718839017084037 0.38864246 0.69995594 prediction 0.437678034168075 Functional Gain - EEPD1 ENSG00000122547 UTR5 Human protein_coding chr7:36193262 chr7:36193266 . . 0 25 hm5C_associated_SNPs_120231 0 0 0 0 1 EEPD1 chr7:36193283 5'GT 36193283 Upstream 18bp
chr8 2024286 2024286 1 + C A rs370886250 2024285 + 2024265 2024305 41 TTGCAGTGCCACGACGCCAACCGGGACTACGTCATCGTGAC TTGCAGTGCCACGACGCCAACAGGGACTACGTCATCGTGAC < 41bp 0.452626008828793 0.718832388899642 0.8633116 0.9193284 prediction 0.437664777799283 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2024285 chr8:2024286 synonymous SNV . 0 22 hm5C_associated_SNPs_120233 0 0 0 0 2 MYOM2 chr8:2024221 3'AG 2024221 Downstream 66bp
chr8 2024286 2024286 1 + C A rs370886250 2024285 + 2024265 2024305 41 TTGCAGTGCCACGACGCCAACCGGGACTACGTCATCGTGAC TTGCAGTGCCACGACGCCAACAGGGACTACGTCATCGTGAC < 41bp 0.452626008828793 0.718832388899642 0.8633116 0.9193284 prediction 0.437664777799283 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2024285 chr8:2024286 synonymous SNV . 0 22 hm5C_associated_SNPs_120233 0 0 0 0 2 MYOM2 chr8:2024362 5'GT 2024362 Upstream 77bp
chr3 169548416 169548416 1 + A G UCEC 169548413 + 169548393 169548433 41 TCCAGATGCCATTTGCCAAGCACAAGGTGAGGAAACTTAGT TCCAGATGCCATTTGCCAAGCACGAGGTGAGGAAACTTAGT < 41bp 0.551014441332603 0.76984390998298 0.13562027 0.20681244 prediction 0.437658937300755 Functional Gain - LRRIQ4 ENSG00000188306 CDS Human protein_coding chr3:169548413 chr3:169548416 nonsynonymous SNV 0.878 0 24 hm5C_associated_SNPs_120235 0 0 0 0 1 LRRIQ4 chr3:169548418 5'GT 169548418 Upstream 3bp
chr7 129736818 129736818 1 + T C UCEC 129736816 + 129736796 129736836 41 CGCTTCATTCAGTCCTGTCCCATCATAAGGATCCCTAACAG CGCTTCATTCAGTCCTGTCCCACCATAAGGATCCCTAACAG < 41bp 0.417040334028659 0.718823971918783 0.13304299 0.09765467 prediction 0.437647943837566 Functional Gain - KLHDC10 ENSG00000128607 CDS Human protein_coding chr7:129736816 chr7:129736818 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_120238 0 0 1 0 2 KLHDC10 chr7:129736761 3'AG 129736761 Downstream 58bp
chr7 129736818 129736818 1 + T C UCEC 129736816 + 129736796 129736836 41 CGCTTCATTCAGTCCTGTCCCATCATAAGGATCCCTAACAG CGCTTCATTCAGTCCTGTCCCACCATAAGGATCCCTAACAG < 41bp 0.417040334028659 0.718823971918783 0.13304299 0.09765467 prediction 0.437647943837566 Functional Gain - KLHDC10 ENSG00000128607 CDS Human protein_coding chr7:129736816 chr7:129736818 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_120238 0 0 1 0 2 KLHDC10 chr7:129736847 5'GT 129736847 Upstream 30bp
chr17 12847434 12847434 1 + T G PRAD 12847432 + 12847412 12847452 41 GGGAAGCCGCTGGAGGAGCACCTCACCATCAGCGGCCGGGA GGGAAGCCGCTGGAGGAGCACCGCACCATCAGCGGCCGGGA < 41bp 0.360726420247473 0.718821049798577 0.18088329 0.25055277 prediction 0.437642099597154 Functional Gain - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12847432 chr17:12847434 nonsynonymous SNV 0.924 4 23 hm5C_associated_SNPs_120241 0 0 1 0 1 ARHGAP44 chr17:12847513 5'GT 12847513 Upstream 80bp
chr11 111420421 111420421 1 + C G rs138825674 111420417 + 111420397 111420437 41 CCATCAGCCATCGGCACCCGCTGGCATCGGAGGCCCCTACA CCATCAGCCATCGGCACCCGCTGGGATCGGAGGCCCCTACA < 41bp 0.665953392226367 0.884767089304407 0.19390821 0.5745043 prediction 0.437627394156081 Functional Gain - LAYN ENSG00000204381 CDS Human protein_coding chr11:111420417 chr11:111420421 synonymous SNV . 0 25 hm5C_associated_SNPs_120245 0 0 0 0 2 LAYN chr11:111420343 3'AG 111420343 Downstream 79bp
chr11 111420421 111420421 1 + C G rs138825674 111420417 + 111420397 111420437 41 CCATCAGCCATCGGCACCCGCTGGCATCGGAGGCCCCTACA CCATCAGCCATCGGCACCCGCTGGGATCGGAGGCCCCTACA < 41bp 0.665953392226367 0.884767089304407 0.19390821 0.5745043 prediction 0.437627394156081 Functional Gain - LAYN ENSG00000204381 CDS Human protein_coding chr11:111420417 chr11:111420421 synonymous SNV . 0 25 hm5C_associated_SNPs_120245 0 0 0 0 2 LAYN chr11:111420500 5'GT 111420500 Upstream 80bp
chrX 128925031 128925031 1 + C T rs150062353 128925030 + 128925010 128925050 41 AGCAAGAGGAGCATGAACTTCCGGTGCTCAGCCGCCAGGCA AGCAAGAGGAGCATGAACTTCTGGTGCTCAGCCGCCAGGCA < 41bp 0.571261867121253 0.790068874999551 0.86489123 0.29995912 prediction 0.437614015756596 Functional Gain - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128925030 chrX:128925031 nonsynonymous SNV 0.018 0 22 hm5C_associated_SNPs_120247 0 0 0 0 1 SASH3 chrX:128925057 5'GT 128925057 Upstream 27bp
chr6 116559428 116559428 1 + C A UCEC 116559427 + 116559407 116559447 41 AATTGGGAGACAGTCCTCATCCTGGAAGAACTCAGAGGGGA AATTGGGAGACAGTCCTCATCATGGAAGAACTCAGAGGGGA < 41bp 0.459086598296833 0.718801620611698 0.21034789 0.4634684 prediction 0.437603241223396 Functional Gain - NT5DC1 ENSG00000178425 CDS Human protein_coding chr6:116559427 chr6:116559428 nonsynonymous SNV 0.799 3 22 hm5C_associated_SNPs_120249 0 0 1 0 2 NT5DC1 chr6:116559350 3'AG 116559350 Downstream 79bp
chr6 116559428 116559428 1 + C A UCEC 116559427 + 116559407 116559447 41 AATTGGGAGACAGTCCTCATCCTGGAAGAACTCAGAGGGGA AATTGGGAGACAGTCCTCATCATGGAAGAACTCAGAGGGGA < 41bp 0.459086598296833 0.718801620611698 0.21034789 0.4634684 prediction 0.437603241223396 Functional Gain - NT5DC1 ENSG00000178425 CDS Human protein_coding chr6:116559427 chr6:116559428 nonsynonymous SNV 0.799 3 22 hm5C_associated_SNPs_120249 0 0 1 0 2 NT5DC1 chr6:116559511 5'GT 116559511 Upstream 84bp
chr7 157208761 157208761 1 + A G LIHC 157208758 + 157208738 157208778 41 GCAGAAGCAGAGAGAGGAGTCGAAGAAGAAGAAGTCGACCA GCAGAAGCAGAGAGAGGAGTCGAGGAAGAAGAAGTCGACCA < 41bp 0.529049948079754 0.747849833584886 0.30050632 0.49788952 prediction 0.437599771010264 Functional Gain - DNAJB6 ENSG00000105993 CDS Human protein_coding chr7:157208758 chr7:157208761 nonsynonymous SNV 0.982 2 24 hm5C_associated_SNPs_120251 0 0 1 0 1 DNAJB6 chr7:157208710 3'AG 157208710 Downstream 52bp
chr18 43204731 43204731 1 + C T LUAD 43204730 + 43204710 43204750 41 CCCGAGCTGGCCCTCGACATCCCCGGATACTCACCCAGCTC CCCGAGCTGGCCCTCGACATCTCCGGATACTCACCCAGCTC < 41bp 0.594818153460562 0.813613796818503 0.11207801 0.23163259 prediction 0.437591286715882 Functional Gain - SLC14A2 ENSG00000132874 CDS Human protein_coding chr18:43204730 chr18:43204731 synonymous SNV . 0 22 hm5C_associated_SNPs_120254 0 0 0 0 1 SLC14A2 chr18:43204779 5'GT 43204779 Upstream 49bp
chr2 71206308 71206308 1 + C T STAD 71206307 + 71206287 71206327 41 GCGCCGCCCTGCCTCGCTCACCCCGCCCCGCGCTGACCCCA GCGCCGCCCTGCCTCGCTCACTCCGCCCCGCGCTGACCCCA < 41bp 0.577220994090091 0.796011088716829 0.33582747 0.34512323 prediction 0.437580189253477 Functional Gain - ANKRD53 ENSG00000144031 CDS Human protein_coding chr2:71206307 chr2:71206308 synonymous SNV . 0 22 hm5C_associated_SNPs_120257 0 0 0 0 1 ANKRD53 chr2:71206227 3'AG 71206227 Downstream 82bp
chr19 498502 498502 1 + C T COAD 498501 + 498481 498521 41 GACCCTCCATCACAGCCTTCCCGGACCAGCTGACCGTCTCC GACCCTCCATCACAGCCTTCCTGGACCAGCTGACCGTCTCC < 41bp 0.567000696471281 0.785788859777825 0.02716294 0.069600314 prediction 0.437576326613087 Functional Gain - MADCAM1 ENSG00000099866 CDS Human protein_coding chr19:498501 chr19:498502 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_120258 0 0 0 0 1 MADCAM1 chr19:498496 3'AG 498496 Downstream 7bp
chr15 74174024 74174024 1 + C T SKCM 74174023 + 74174003 74174043 41 AGGACTGAAGCCTGGAAATTCCTCACGGGCTACTTCTCATG AGGACTGAAGCCTGGAAATTCTTCACGGGCTACTTCTCATG < 41bp 0.447894633285802 0.718787251565033 0.036019325 0.35223174 prediction 0.437574503130066 Functional Gain - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74174023 chr15:74174024 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_120259 0 0 0 0 1 TBC1D21 chr15:74174088 5'GT 74174088 Upstream 65bp
chr16 1551737 1551737 1 + C T SKCM 1551736 + 1551716 1551756 41 ATCGTGGATGGCGGCGTCCCCCAAGCACAGCTGGCGGGCTC ATCGTGGATGGCGGCGTCCCCTAAGCACAGCTGGCGGGCTC < 41bp 0.547410221452977 0.76619595337801 0.3184899 0.18398187 prediction 0.437571463850066 Functional Gain - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1551736 chr16:1551737 stopgain 0.000 0 22 hm5C_associated_SNPs_120260 0 0 1 0 2 TELO2 chr16:1551664 3'AG 1551664 Downstream 74bp
chr16 1551737 1551737 1 + C T SKCM 1551736 + 1551716 1551756 41 ATCGTGGATGGCGGCGTCCCCCAAGCACAGCTGGCGGGCTC ATCGTGGATGGCGGCGTCCCCTAAGCACAGCTGGCGGGCTC < 41bp 0.547410221452977 0.76619595337801 0.3184899 0.18398187 prediction 0.437571463850066 Functional Gain - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1551736 chr16:1551737 stopgain 0.000 0 22 hm5C_associated_SNPs_120260 0 0 1 0 2 TELO2 chr16:1551774 5'GT 1551774 Upstream 38bp
chr20 30681711 30681711 1 + C T UCEC 30681710 + 30681690 30681730 41 GAGCAGAGGAACTACATCCACCGAGACCTCCGAGCTGCCAA GAGCAGAGGAACTACATCCACTGAGACCTCCGAGCTGCCAA < 41bp 0.463162539305491 0.718776502739765 0.3277973 0.15886363 prediction 0.437553005479529 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30681710 chr20:30681711 stopgain 1.000 1 22 hm5C_associated_SNPs_120262 0 0 0 0 1 HCK chr20:30681666 3'AG 30681666 Downstream 46bp
chr11 125447449 125447449 1 + T C BRCA 125447446 + 125447426 125447466 41 ATTTATTCCTGTGCTTCAGTCGGTAACAGCCCGAATTATCG ATTTATTCCTGTGCTTCAGTCGGCAACAGCCCGAATTATCG < 41bp 0.511025138090849 0.729793853347526 0.21240962 0.351861 prediction 0.437537430513355 Functional Gain - EI24 ENSG00000149547 CDS Human protein_coding chr11:125447446 chr11:125447449 nonsynonymous SNV 0.856 2 24 hm5C_associated_SNPs_120265 0 0 1 0 2 EI24 chr11:125447400 3'AG 125447400 Downstream 50bp
chr11 125447449 125447449 1 + T C BRCA 125447446 + 125447426 125447466 41 ATTTATTCCTGTGCTTCAGTCGGTAACAGCCCGAATTATCG ATTTATTCCTGTGCTTCAGTCGGCAACAGCCCGAATTATCG < 41bp 0.511025138090849 0.729793853347526 0.21240962 0.351861 prediction 0.437537430513355 Functional Gain - EI24 ENSG00000149547 CDS Human protein_coding chr11:125447446 chr11:125447449 nonsynonymous SNV 0.856 2 24 hm5C_associated_SNPs_120265 0 0 1 0 2 EI24 chr11:125447466 5'GT 125447466 Upstream 18bp
chr7 151700024 151700024 1 + C T LIHC 151700023 + 151700003 151700043 41 TCTCTTATGAGATGGATGGACCAGAAGGATCTACTAAACCA TCTCTTATGAGATGGATGGACTAGAAGGATCTACTAAACCA < 41bp 0.565239268747231 0.784002211866162 0.28309155 0.32869327 prediction 0.437525886237863 Functional Gain - GALNTL5 ENSG00000106648 CDS Human protein_coding chr7:151700023 chr7:151700024 nonsynonymous SNV 0.858 3 22 hm5C_associated_SNPs_120266 0 0 0 0 1 GALNTL5 chr7:151700048 5'GT 151700048 Upstream 25bp
chr15 44086130 44086130 1 + C A COAD 44086129 + 44086109 44086149 41 TCCCTTTTGTGCTTCCTTCCCCTCAGGTAGCCTCTCTCCCC TCCCTTTTGTGCTTCCTTCCCATCAGGTAGCCTCTCTCCCC < 41bp 0.579282341716335 0.798043929014703 0.11288208 0.15636814 prediction 0.437523174596738 Functional Gain - SERF2 ENSG00000140264 CDS Human protein_coding chr15:44086129 chr15:44086130 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_120267 0 0 1 0 1 SERF2 chr15:44086134 5'GT 44086134 Upstream 5bp
chr3 63542379 63542379 1 + C T SKCM 63542378 + 63542358 63542398 41 ACTGTCGTTTACATTTTCTTCCAGAACAAATACCGGGAAAA ACTGTCGTTTACATTTTCTTCTAGAACAAATACCGGGAAAA < 41bp 0.467096702217695 0.718759785456265 0.24311188 0.24361649 prediction 0.43751957091253 Functional Gain - SYNPR ENSG00000163630 CDS Human protein_coding chr3:63542378 chr3:63542379 stopgain 1.000 1 22 hm5C_associated_SNPs_120269 0 0 0 0 1 SYNPR chr3:63542417 5'GT 63542417 Upstream 39bp
chr11 6414910 6414910 1 + C T UCEC 6414909 + 6414889 6414929 41 AGCTGGAGCTGGAATTATTACCGAATTGTAGCCAGGTAGGA AGCTGGAGCTGGAATTATTACTGAATTGTAGCCAGGTAGGA < 41bp 0.575184712814704 0.79393100638847 0.10761553 0.10545635 prediction 0.437492587147533 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6414909 chr11:6414910 stopgain 0.943 0 22 hm5C_associated_SNPs_120272 3 0 1 0 2 SMPD1 chr11:6414847 3'AG 6414847 Downstream 64bp
chr11 6414910 6414910 1 + C T UCEC 6414909 + 6414889 6414929 41 AGCTGGAGCTGGAATTATTACCGAATTGTAGCCAGGTAGGA AGCTGGAGCTGGAATTATTACTGAATTGTAGCCAGGTAGGA < 41bp 0.575184712814704 0.79393100638847 0.10761553 0.10545635 prediction 0.437492587147533 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6414909 chr11:6414910 stopgain 0.943 0 22 hm5C_associated_SNPs_120272 3 0 1 0 2 SMPD1 chr11:6414923 5'GT 6414923 Upstream 14bp
chr15 50647720 50647720 1 + C G rs190620523 50647719 + 50647699 50647739 41 GCGGAGAGGCCGGGTGGCCACCGAACCTTCCCGCCTGTTCT GCGGAGAGGCCGGGTGGCCACGGAACCTTCCCGCCTGTTCT < 41bp 0.651063745163314 0.86980173984248 0.6222959 0.8601389 prediction 0.437475989358332 Functional Gain - GABPB1-AS1 ENSG00000244879 ncRNA_exonic Human antisense chr15:50647719 chr15:50647720 . . 0 22 hm5C_associated_SNPs_120275 0 0 1 0 1 GABPB1-AS1 chr15:50647742 5'GT 50647742 Upstream 23bp
chrX 18622107 18622107 1 + C T HNSC 18622106 + 18622086 18622126 41 AACCTGAGTGTAGGCCTGCCCCGGGCTGACGAAGGTCTCCC AACCTGAGTGTAGGCCTGCCCTGGGCTGACGAAGGTCTCCC < 41bp 0.558900429177312 0.777634571844284 0.43213868 0.34745565 prediction 0.437468285333943 Functional Gain - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18622106 chrX:18622107 nonsynonymous SNV 0.979 4 22 hm5C_associated_SNPs_120277 0 0 0 0 1 CDKL5 chrX:18622022 3'AG 18622022 Downstream 86bp
chr15 68099074 68099074 1 + C G rs187760642 68099070 + 68099050 68099090 41 GCGCTGGAGGAGAGGCGGAGCCAGCAGGGGCCCCCGTGAGG GCGCTGGAGGAGAGGCGGAGCCAGGAGGGGCCCCCGTGAGG < 41bp 0.435493955106213 0.718729849500486 0.8327216 0.898262 prediction 0.437459699000971 Functional Gain - MAP2K5 ENSG00000137764 CDS Human protein_coding chr15:68099070 chr15:68099074 nonsynonymous SNV 0.984 0 25 hm5C_associated_SNPs_120280 0 0 1 0 1 MAP2K5 chr15:68098984 3'AG 68098984 Downstream 91bp
chr8 120233876 120233876 1 + T C COAD 120233873 + 120233853 120233893 41 GGTTGCCTCCTCCAATGTTCCTCTACCTCTACTACAAGGAT GGTTGCCTCCTCCAATGTTCCTCCACCTCTACTACAAGGAT < 41bp 0.514293091902172 0.733014391038377 0.07838845 0.102903634 prediction 0.43744259827241 Functional Gain - MAL2 ENSG00000147676 CDS Human protein_coding chr8:120233873 chr8:120233876 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_120281 0 0 1 0 1 MAL2 chr8:120233827 3'AG 120233827 Downstream 50bp
chr18 33722273 33722273 1 + T C UCEC 33722271 + 33722251 33722291 41 AAGTGCTTTCTCTCTGTGGACATGAGGATTGGATTAGAGGA AAGTGCTTTCTCTCTGTGGACACGAGGATTGGATTAGAGGA < 41bp 0.425366674793041 0.718704106182529 0.27126294 0.20821595 prediction 0.437408212365058 Functional Gain - ELP2 ENSG00000134759 CDS Human protein_coding chr18:33722271 chr18:33722273 synonymous SNV . 0 23 hm5C_associated_SNPs_120283 0 0 1 0 2 ELP2 chr18:33722244 3'AG 33722244 Downstream 30bp
chr18 33722273 33722273 1 + T C UCEC 33722271 + 33722251 33722291 41 AAGTGCTTTCTCTCTGTGGACATGAGGATTGGATTAGAGGA AAGTGCTTTCTCTCTGTGGACACGAGGATTGGATTAGAGGA < 41bp 0.425366674793041 0.718704106182529 0.27126294 0.20821595 prediction 0.437408212365058 Functional Gain - ELP2 ENSG00000134759 CDS Human protein_coding chr18:33722271 chr18:33722273 synonymous SNV . 0 23 hm5C_associated_SNPs_120283 0 0 1 0 2 ELP2 chr18:33722310 5'GT 33722310 Upstream 38bp
chr5 118969682 118969682 1 + C T SKCM 118969681 + 118969661 118969701 41 AGAGAATACATCGAGACAGCCCCCAGCCTCAATCACCCCTG AGAGAATACATCGAGACAGCCTCCAGCCTCAATCACCCCTG < 41bp 0.601369745652091 0.820069827345596 0.10521877 0.930408 prediction 0.437400163387009 Functional Gain - FAM170A ENSG00000164334 CDS Human protein_coding chr5:118969681 chr5:118969682 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_120284 0 0 0 0 1 FAM170A chr5:118969655 3'AG 118969655 Downstream 28bp
chr1 207300089 207300089 1 + T A BLCA 207300085 + 207300065 207300105 41 CTGTCGCAAGCCAGATGTTTCACATGGGGAAATGGTCTCTG CTGTCGCAAGCCAGATGTTTCACAAGGGGAAATGGTCTCTG < 41bp 0.403809426693591 0.718696161939003 0.104566604 0.2052606 prediction 0.437392323878006 Functional Gain - C4BPA ENSG00000123838 CDS Human protein_coding chr1:207300085 chr1:207300089 nonsynonymous SNV 0.020 0 25 hm5C_associated_SNPs_120285 0 0 0 0 1 C4BPA chr1:207300058 3'AG 207300058 Downstream 32bp
chr2 45170032 45170032 1 + C T UCEC 45170031 + 45170011 45170051 41 CCGGCGGCAGCGCGACCGCGCCGCGGCGGCCAAGAACAGGT CCGGCGGCAGCGCGACCGCGCTGCGGCGGCCAAGAACAGGT < 41bp 0.542848411365875 0.761534906518842 0.3034595 0.38320005 prediction 0.437372990305934 Functional Gain - SIX3 ENSG00000138083 CDS Human protein_coding chr2:45170031 chr2:45170032 synonymous SNV . 0 22 hm5C_associated_SNPs_120286 0 0 0 0 1 SIX3 chr2:45170049 5'GT 45170049 Upstream 18bp
chr2 162227718 162227718 1 + C G LIHC 162227717 + 162227697 162227737 41 TTGGTTGGTATCACAGTCACCCTGGCTTTGGTTGTTGGCTT TTGGTTGGTATCACAGTCACCGTGGCTTTGGTTGTTGGCTT < 41bp 0.408883304173136 0.718682905181415 0.13966504 0.30423856 prediction 0.43736581036283 Functional Gain - PSMD14 ENSG00000115233 CDS Human protein_coding chr2:162227717 chr2:162227718 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_120288 0 0 1 0 1 PSMD14 chr2:162227683 3'AG 162227683 Downstream 36bp
chr22 25598707 25598707 1 + C A HNSC 25598706 + 25598686 25598726 41 CTCTCGGCCGAGTGCCCCAGCCTGACCGACAGCCTGCTGGA CTCTCGGCCGAGTGCCCCAGCATGACCGACAGCCTGCTGGA < 41bp 0.447759319149616 0.718677844976163 0.05291912 0.17395875 prediction 0.437355689952326 Functional Gain - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25598706 chr22:25598707 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_120290 0 0 0 0 2 CRYBB3 chr22:25598641 3'AG 25598641 Downstream 67bp
chr22 25598707 25598707 1 + C A HNSC 25598706 + 25598686 25598726 41 CTCTCGGCCGAGTGCCCCAGCCTGACCGACAGCCTGCTGGA CTCTCGGCCGAGTGCCCCAGCATGACCGACAGCCTGCTGGA < 41bp 0.447759319149616 0.718677844976163 0.05291912 0.17395875 prediction 0.437355689952326 Functional Gain - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25598706 chr22:25598707 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_120290 0 0 0 0 2 CRYBB3 chr22:25598759 5'GT 25598759 Upstream 53bp
chr22 38204130 38204130 1 + C T rs138025366 38204129 + 38204109 38204149 41 GAGTGAGCGGGTCATCACGTCCCGTCAGGGGCCGCACATCC GAGTGAGCGGGTCATCACGTCTCGTCAGGGGCCGCACATCC < 41bp 0.47794305071393 0.718676796745265 0.25562453 0.26513758 prediction 0.437353593490529 Functional Gain - GCAT ENSG00000100116 CDS Human protein_coding chr22:38204129 chr22:38204130 synonymous SNV . 0 22 hm5C_associated_SNPs_120291 0 0 1 0 1 GCAT chr22:38204170 5'GT 38204170 Upstream 41bp
chr13 113473658 113473658 1 + A G OV 113473655 + 113473635 113473675 41 GGACACCAAAGGCTTCCACACAGAGGAGGATATCGGCGGAC GGACACCAAAGGCTTCCACACAGGGGAGGATATCGGCGGAC < 41bp 0.597980913889602 0.816654735042353 0.90927994 0.9311091 prediction 0.437347642305501 Functional Gain - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113473655 chr13:113473658 nonsynonymous SNV 0.471 1 24 hm5C_associated_SNPs_120294 0 0 1 0 2 ATP11A chr13:113473618 3'AG 113473618 Downstream 41bp
chr13 113473658 113473658 1 + A G OV 113473655 + 113473635 113473675 41 GGACACCAAAGGCTTCCACACAGAGGAGGATATCGGCGGAC GGACACCAAAGGCTTCCACACAGGGGAGGATATCGGCGGAC < 41bp 0.597980913889602 0.816654735042353 0.90927994 0.9311091 prediction 0.437347642305501 Functional Gain - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113473655 chr13:113473658 nonsynonymous SNV 0.471 1 24 hm5C_associated_SNPs_120294 0 0 1 0 2 ATP11A chr13:113473721 5'GT 113473721 Upstream 64bp
chr11 63668467 63668467 1 + C T LUAD 63668466 + 63668446 63668486 41 GGTTATACACGGGAAGAGATCCAGGACTCGCTGGTGGGCCA GGTTATACACGGGAAGAGATCTAGGACTCGCTGGTGGGCCA < 41bp 0.591362794315657 0.810031629910845 0.84204143 0.65502524 prediction 0.437337671190377 Functional Gain - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63668466 chr11:63668467 stopgain 0.998 0 22 hm5C_associated_SNPs_120297 0 0 1 0 2 MARK2 chr11:63668429 3'AG 63668429 Downstream 39bp
chr11 63668467 63668467 1 + C T LUAD 63668466 + 63668446 63668486 41 GGTTATACACGGGAAGAGATCCAGGACTCGCTGGTGGGCCA GGTTATACACGGGAAGAGATCTAGGACTCGCTGGTGGGCCA < 41bp 0.591362794315657 0.810031629910845 0.84204143 0.65502524 prediction 0.437337671190377 Functional Gain - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63668466 chr11:63668467 stopgain 0.998 0 22 hm5C_associated_SNPs_120297 0 0 1 0 2 MARK2 chr11:63668541 5'GT 63668541 Upstream 75bp
chr8 92355671 92355671 1 + T C COAD 92355668 + 92355648 92355688 41 CCATGGGAAGGACGGCTGGCCTGTACAGCACAGGAGCGAAG CCATGGGAAGGACGGCTGGCCTGCACAGCACAGGAGCGAAG < 41bp 0.534514813010983 0.753180364695995 0.020598799 0.036622077 prediction 0.437331103370025 Functional Gain - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92355668 chr8:92355671 nonsynonymous SNV 0.796 5 24 hm5C_associated_SNPs_120298 0 0 0 0 2 SLC26A7 chr8:92355581 3'AG 92355581 Downstream 91bp
chr8 92355671 92355671 1 + T C COAD 92355668 + 92355648 92355688 41 CCATGGGAAGGACGGCTGGCCTGTACAGCACAGGAGCGAAG CCATGGGAAGGACGGCTGGCCTGCACAGCACAGGAGCGAAG < 41bp 0.534514813010983 0.753180364695995 0.020598799 0.036622077 prediction 0.437331103370025 Functional Gain - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92355668 chr8:92355671 nonsynonymous SNV 0.796 5 24 hm5C_associated_SNPs_120298 0 0 0 0 2 SLC26A7 chr8:92355694 5'GT 92355694 Upstream 24bp
chr20 62631108 62631108 1 + C T SKCM 62631107 + 62631087 62631127 41 TGAAGGGGACGGAGATGTGCCCCAAGGTGAGGTATTTCCTG TGAAGGGGACGGAGATGTGCCTCAAGGTGAGGTATTTCCTG < 41bp 0.46024010938735 0.718662537847477 0.32603848 0.80023664 prediction 0.437325075694954 Functional Gain - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62631107 chr20:62631108 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_120300 0 0 1 0 1 PRPF6 chr20:62631112 5'GT 62631112 Upstream 5bp
chr17 40460264 40460264 1 + C T UCEC 40460263 + 40460243 40460283 41 TCCATCAGGTCCCTGGCTGACCGGCTGGGGGACCTGAGCTA TCCATCAGGTCCCTGGCTGACTGGCTGGGGGACCTGAGCTA < 41bp 0.462977269541486 0.718656729256378 0.7471975 0.7777748 prediction 0.437313458512757 Functional Gain - STAT5A ENSG00000126561 CDS Human protein_coding chr17:40460263 chr17:40460264 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_120303 0 0 1 0 2 STAT5A chr17:40460196 3'AG 40460196 Downstream 69bp
chr17 40460264 40460264 1 + C T UCEC 40460263 + 40460243 40460283 41 TCCATCAGGTCCCTGGCTGACCGGCTGGGGGACCTGAGCTA TCCATCAGGTCCCTGGCTGACTGGCTGGGGGACCTGAGCTA < 41bp 0.462977269541486 0.718656729256378 0.7471975 0.7777748 prediction 0.437313458512757 Functional Gain - STAT5A ENSG00000126561 CDS Human protein_coding chr17:40460263 chr17:40460264 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_120303 0 0 1 0 2 STAT5A chr17:40460351 5'GT 40460351 Upstream 88bp
chr4 74364932 74364932 1 + T C STAD 74364929 + 74364909 74364949 41 AGCTTTCACTACTTGCTGTACGCTAAGTGAAGAGTTTGCCT AGCTTTCACTACTTGCTGTACGCCAAGTGAAGAGTTTGCCT < 41bp 0.510384412282129 0.729041076845753 0.06197828 0.09278971 prediction 0.437313329127248 Functional Gain - AFM ENSG00000079557 CDS Human protein_coding chr4:74364929 chr4:74364932 nonsynonymous SNV 0.017 3 24 hm5C_associated_SNPs_120304 0 0 0 0 1 AFM chr4:74364963 5'GT 74364963 Upstream 32bp
chr8 27516070 27516070 1 + A G UCEC 27516067 + 27516047 27516087 41 TGAAGCTGGGCAGCTGGGGCCAGAGATCCGAAAACTGCAGG TGAAGCTGGGCAGCTGGGGCCAGGGATCCGAAAACTGCAGG < 41bp 0.566467604551266 0.785122858960089 0.8335551 0.8854283 prediction 0.437310508817647 Functional Gain - SCARA3 ENSG00000168077 CDS Human protein_coding chr8:27516067 chr8:27516070 nonsynonymous SNV 0.918 4 24 hm5C_associated_SNPs_120305 0 0 0 0 1 SCARA3 chr8:27516013 3'AG 27516013 Downstream 58bp
chr10 81904064 81904064 1 + C T rs115786338 81904063 + 81904043 81904083 41 AGCTGGCCTGGAACCTGCCCCCGGGACCCTTCAGCCCCGCT AGCTGGCCTGGAACCTGCCCCTGGGACCCTTCAGCCCCGCT < 41bp 0.48635254838045 0.718655125773619 0.3911665 0.34587988 prediction 0.437310251547238 Functional Gain - PLAC9 ENSG00000189129 CDS Human protein_coding chr10:81904063 chr10:81904064 nonsynonymous SNV 0.859 0 22 hm5C_associated_SNPs_120306 0 0 0 0 2 PLAC9 chr10:81903979 3'AG 81903979 Downstream 86bp
chr10 81904064 81904064 1 + C T rs115786338 81904063 + 81904043 81904083 41 AGCTGGCCTGGAACCTGCCCCCGGGACCCTTCAGCCCCGCT AGCTGGCCTGGAACCTGCCCCTGGGACCCTTCAGCCCCGCT < 41bp 0.48635254838045 0.718655125773619 0.3911665 0.34587988 prediction 0.437310251547238 Functional Gain - PLAC9 ENSG00000189129 CDS Human protein_coding chr10:81904063 chr10:81904064 nonsynonymous SNV 0.859 0 22 hm5C_associated_SNPs_120306 0 0 0 0 2 PLAC9 chr10:81904099 5'GT 81904099 Upstream 36bp
chr20 55012296 55012296 1 + T C LUAD 55012294 + 55012274 55012314 41 GCTTTCAGCAGAGGGGACATCCTGACCATTCTGGAGCAACA GCTTTCAGCAGAGGGGACATCCCGACCATTCTGGAGCAACA < 41bp 0.425377576451094 0.718647799088402 0.22983319 0.21997187 prediction 0.437295598176803 Functional Gain - CASS4 ENSG00000087589 CDS Human protein_coding chr20:55012294 chr20:55012296 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_120310 0 0 0 0 1 CASS4 chr20:55012220 3'AG 55012220 Downstream 77bp
chr1 55472890 55472890 1 + C A STAD 55472889 + 55472869 55472909 41 ATGGAGGCTGCCGTGGTCATCCACAAGGGCTCAGACGAGAG ATGGAGGCTGCCGTGGTCATCAACAAGGGCTCAGACGAGAG < 41bp 0.607170377326312 0.825813919332634 0.100904405 0.32690743 prediction 0.437287084012645 Functional Gain - BSND ENSG00000162399 CDS Human protein_coding chr1:55472889 chr1:55472890 nonsynonymous SNV 0.004 2 22 hm5C_associated_SNPs_120313 0 0 0 0 1 BSND chr1:55472945 5'GT 55472945 Upstream 56bp
chr6 160577040 160577040 1 + T C SKCM 160577037 + 160577017 160577057 41 CCTGCTTGCCGCGGGAGTGACGCTACTTCTTCCAGAGACCA CCTGCTTGCCGCGGGAGTGACGCCACTTCTTCCAGAGACCA < 41bp 0.520461134602564 0.739104183015661 0.1744847 0.17066592 prediction 0.437286096826196 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160577037 chr6:160577040 nonsynonymous SNV 0.539 4 24 hm5C_associated_SNPs_120314 0 0 0 0 2 SLC22A1 chr6:160577007 3'AG 160577007 Downstream 34bp
chr6 160577040 160577040 1 + T C SKCM 160577037 + 160577017 160577057 41 CCTGCTTGCCGCGGGAGTGACGCTACTTCTTCCAGAGACCA CCTGCTTGCCGCGGGAGTGACGCCACTTCTTCCAGAGACCA < 41bp 0.520461134602564 0.739104183015661 0.1744847 0.17066592 prediction 0.437286096826196 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160577037 chr6:160577040 nonsynonymous SNV 0.539 4 24 hm5C_associated_SNPs_120314 0 0 0 0 2 SLC22A1 chr6:160577106 5'GT 160577106 Upstream 67bp
chr5 120021674 120021674 1 + C A GBM 120021670 + 120021650 120021690 41 TGGTTGACCAGATTGACACCCTGACCTCTGACCTACAGCTG TGGTTGACCAGATTGACACCCTGAACTCTGACCTACAGCTG < 41bp 0.316890173520657 0.718641469463701 0.19951051 0.2750529 prediction 0.437282938927402 Functional Gain - PRR16 ENSG00000184838 CDS Human protein_coding chr5:120021670 chr5:120021674 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_120315 0 0 0 0 1 PRR16 chr5:120021649 3'AG 120021649 Downstream 26bp
chr12 50348078 50348078 1 + T C rs426496 50348075 + 50348055 50348095 41 CCTGCTCTCTCCATAGGCTTCTCTGTGGCCCTGGGCCACCT CCTGCTCTCTCCATAGGCTTCTCCGTGGCCCTGGGCCACCT < 41bp 0.526651454584418 0.745286794376373 0.6552328 0.8392813 prediction 0.43727067958391 Functional Gain - AQP2 ENSG00000167580 CDS Human protein_coding chr12:50348075 chr12:50348078 synonymous SNV . 0 24 hm5C_associated_SNPs_120317 0 0 0 0 1 AQP2 chr12:50348102 5'GT 50348102 Upstream 25bp
chr12 50474421 50474421 1 + T C BLCA 50474419 + 50474399 50474439 41 TTCTCATGCCATGGGCATGGCGTGGCTCCCTATCATCCAAA TTCTCATGCCATGGGCATGGCGCGGCTCCCTATCATCCAAA < 41bp 0.456933610717803 0.718633504703829 0.30546278 0.46747997 prediction 0.437267009407657 Functional Gain - ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50474419 chr12:50474421 nonsynonymous SNV 0.005 0 23 hm5C_associated_SNPs_120320 0 0 0 0 1 ASIC1 chr12:50474510 5'GT 50474510 Upstream 90bp
chr1 10689685 10689685 1 + C A UCS 10689684 + 10689664 10689704 41 AGCCCTGCGGCCGTGAACCACCACAGCAGCAGCGACATCTC AGCCCTGCGGCCGTGAACCACAACAGCAGCAGCGACATCTC < 41bp 0.586050312780891 0.804680918745288 0.16219229 0.16707918 prediction 0.437261211928794 Functional Gain - PEX14 ENSG00000142655 CDS Human protein_coding chr1:10689684 chr1:10689685 nonsynonymous SNV 0.991 1 22 hm5C_associated_SNPs_120321 0 0 0 0 1 PEX14 chr1:10689588 3'AG 10689588 Downstream 98bp
chr12 85521659 85521659 1 + A G COAD 85521656 + 85521636 85521676 41 ACTGGCGTGGTTACCTCATGCGCAGACAGACTCATTTCTCC ACTGGCGTGGTTACCTCATGCGCGGACAGACTCATTTCTCC < 41bp 0.484827350569258 0.7186272198267 0.06869638 0.20312372 prediction 0.437254439653399 Functional Gain - LRRIQ1 ENSG00000133640 CDS Human protein_coding chr12:85521656 chr12:85521659 nonsynonymous SNV 0.026 1 24 hm5C_associated_SNPs_120326 0 0 0 0 1 LRRIQ1 chr12:85521610 3'AG 85521610 Downstream 50bp
chr1 44447081 44447081 1 + C T SKCM 44447080 + 44447060 44447100 41 CTCCGGGCTCCCTGAGGTCCCCAGTGCCCTGCCCGGTCCCA CTCCGGGCTCCCTGAGGTCCCTAGTGCCCTGCCCGGTCCCA < 41bp 0.557019257613388 0.775642852218453 0.3129411 0.31829032 prediction 0.43724718921013 Functional Gain - B4GALT2 ENSG00000117411 CDS Human protein_coding chr1:44447080 chr1:44447081 nonsynonymous SNV 0.975 0 22 hm5C_associated_SNPs_120329 0 0 1 0 1 B4GALT2 chr1:44447145 5'GT 44447145 Upstream 65bp
chr21 23470939 23470939 1 + A G rs538088943 23470936 + 23470916 23470956 41 TGGTGCAATTAAGGTATGCACAGATAAGACTCTGTCTACCC TGGTGCAATTAAGGTATGCACAGGTAAGACTCTGTCTACCC < 41bp 0.497904231345815 0.718621919306844 0.5977578 0.81904995 prediction 0.437243838613687 Functional Gain - LINC00308 ENSG00000184856 ncRNA_exonic Human lincRNA chr21:23470936 chr21:23470939 . . 0 24 hm5C_associated_SNPs_120330 0 0 0 2 1 LINC00308 chr21:23471031 5'GT 23471031 Upstream 93bp
chr9 139311596 139311596 1 + C T UCEC 139311595 + 139311575 139311615 41 AGTACCTCCTGGGGGTCCAGCCGGCCTGGGGGAGCGCAGAG AGTACCTCCTGGGGGTCCAGCTGGCCTGGGGGAGCGCAGAG < 41bp 0.525414494793984 0.744031296831144 0.84596455 0.63151395 prediction 0.43723360407432 Functional Gain - PMPCA ENSG00000165688 CDS Human protein_coding chr9:139311595 chr9:139311596 nonsynonymous SNV 0.696 3 22 hm5C_associated_SNPs_120332 0 0 1 0 1 PMPCA chr9:139311666 5'GT 139311666 Upstream 71bp
chr1 155019711 155019711 1 + T C rs138911736 155019709 + 155019689 155019729 41 GTGAAGGTCGGGGGAGACTCCATGCTAGCCCGGCTTCTTCG GTGAAGGTCGGGGGAGACTCCACGCTAGCCCGGCTTCTTCG < 41bp 0.433065065302024 0.718607681875143 0.50322 0.8772075 prediction 0.437215363750286 Functional Gain - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155019709 chr1:155019711 nonsynonymous SNV 0.940 2 23 hm5C_associated_SNPs_120336 0 0 0 0 2 DCST1 chr1:155019672 3'AG 155019672 Downstream 40bp
chr1 155019711 155019711 1 + T C rs138911736 155019709 + 155019689 155019729 41 GTGAAGGTCGGGGGAGACTCCATGCTAGCCCGGCTTCTTCG GTGAAGGTCGGGGGAGACTCCACGCTAGCCCGGCTTCTTCG < 41bp 0.433065065302024 0.718607681875143 0.50322 0.8772075 prediction 0.437215363750286 Functional Gain - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155019709 chr1:155019711 nonsynonymous SNV 0.940 2 23 hm5C_associated_SNPs_120336 0 0 0 0 2 DCST1 chr1:155019788 5'GT 155019788 Upstream 78bp
chr10 49634432 49634432 1 + C G UCEC 49634428 + 49634408 49634448 41 CCATTATGTTTGCAGCCAGTCAGGCAAGGGATTTGTTATCC CCATTATGTTTGCAGCCAGTCAGGGAAGGGATTTGTTATCC < 41bp 0.435489028245018 0.718605633755692 0.3896385 0.87131345 prediction 0.437211267511384 Functional Gain - MAPK8 ENSG00000107643 CDS Human protein_coding chr10:49634428 chr10:49634432 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_120338 0 0 1 0 1 MAPK8 chr10:49634423 3'AG 49634423 Downstream 10bp
chr20 42979359 42979359 1 + C A LUSC 42979358 + 42979338 42979378 41 AGCCGTGCTCCTCCTGTCCCCCCAGTTATCAAGGCAGCTGC AGCCGTGCTCCTCCTGTCCCCACAGTTATCAAGGCAGCTGC < 41bp 0.453008018698079 0.718604980787834 0.040294588 0.19545466 prediction 0.437209961575668 Functional Gain - R3HDML ENSG00000101074 CDS Human protein_coding chr20:42979358 chr20:42979359 nonsynonymous SNV 0.058 4 22 hm5C_associated_SNPs_120339 0 0 0 0 1 R3HDML chr20:42979300 3'AG 42979300 Downstream 60bp
chr20 3804583 3804583 1 + C T OV 3804582 + 3804562 3804602 41 GGCCCCCCATGGACCTGCAGCCGCAATCCTCAGATGAGCAA GGCCCCCCATGGACCTGCAGCTGCAATCCTCAGATGAGCAA < 41bp 0.583239626544431 0.801834951791125 0.06829035 0.05833009 prediction 0.437190650493388 Functional Gain - AP5S1 ENSG00000125843 CDS Human protein_coding chr20:3804582 chr20:3804583 nonsynonymous SNV 0.961 0 22 hm5C_associated_SNPs_120343 0 0 0 0 2 AP5S1 chr20:3804518 3'AG 3804518 Downstream 66bp
chr20 3804583 3804583 1 + C T OV 3804582 + 3804562 3804602 41 GGCCCCCCATGGACCTGCAGCCGCAATCCTCAGATGAGCAA GGCCCCCCATGGACCTGCAGCTGCAATCCTCAGATGAGCAA < 41bp 0.583239626544431 0.801834951791125 0.06829035 0.05833009 prediction 0.437190650493388 Functional Gain - AP5S1 ENSG00000125843 CDS Human protein_coding chr20:3804582 chr20:3804583 nonsynonymous SNV 0.961 0 22 hm5C_associated_SNPs_120343 0 0 0 0 2 AP5S1 chr20:3804522 3'AG 3804522 Downstream 62bp
chr20 44640858 44640858 1 + C A STAD 44640854 + 44640834 44640874 41 TTTCCTGGGTAAGGAGTACTCGACCTGTACCAGCGAGGGCC TTTCCTGGGTAAGGAGTACTCGACATGTACCAGCGAGGGCC < 41bp 0.721982750966512 0.940568336063656 0.2798796 0.3076265 prediction 0.437171170194289 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44640854 chr20:44640858 synonymous SNV . 0 25 hm5C_associated_SNPs_120344 0 0 0 0 2 MMP9 chr20:44640776 3'AG 44640776 Downstream 83bp
chr20 44640858 44640858 1 + C A STAD 44640854 + 44640834 44640874 41 TTTCCTGGGTAAGGAGTACTCGACCTGTACCAGCGAGGGCC TTTCCTGGGTAAGGAGTACTCGACATGTACCAGCGAGGGCC < 41bp 0.721982750966512 0.940568336063656 0.2798796 0.3076265 prediction 0.437171170194289 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44640854 chr20:44640858 synonymous SNV . 0 25 hm5C_associated_SNPs_120344 0 0 0 0 2 MMP9 chr20:44640952 5'GT 44640952 Upstream 95bp
chr4 47034482 47034482 1 + T C UCEC 47034480 + 47034460 47034500 41 ATCGATGTCGCCAGCATAGACATGGTCTCCGAAGTGAATAT ATCGATGTCGCCAGCATAGACACGGTCTCCGAAGTGAATAT < 41bp 0.606444496893167 0.825019151049012 0.44284624 0.44690895 prediction 0.437149308311689 Functional Gain - GABRB1 ENSG00000163288 CDS Human protein_coding chr4:47034480 chr4:47034482 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_120348 0 0 0 0 2 GABRB1 chr4:47034434 3'AG 47034434 Downstream 49bp
chr4 47034482 47034482 1 + T C UCEC 47034480 + 47034460 47034500 41 ATCGATGTCGCCAGCATAGACATGGTCTCCGAAGTGAATAT ATCGATGTCGCCAGCATAGACACGGTCTCCGAAGTGAATAT < 41bp 0.606444496893167 0.825019151049012 0.44284624 0.44690895 prediction 0.437149308311689 Functional Gain - GABRB1 ENSG00000163288 CDS Human protein_coding chr4:47034480 chr4:47034482 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_120348 0 0 0 0 2 GABRB1 chr4:47034501 5'GT 47034501 Upstream 20bp
chr5 113698918 113698918 1 + T C SKCM 113698916 + 113698896 113698936 41 GGCATGTTCGGCATCGTGGTCATGGTCATCGAGACCGAGCT GGCATGTTCGGCATCGTGGTCACGGTCATCGAGACCGAGCT < 41bp 0.464300376205331 0.718574118851326 0.3064487 0.34197813 prediction 0.437148237702652 Functional Gain - KCNN2 ENSG00000080709 CDS Human protein_coding chr5:113698916 chr5:113698918 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_120349 0 0 0 0 1 KCNN2 chr5:113698958 5'GT 113698958 Upstream 41bp
chr9 96411492 96411492 1 + C A SARC 96411491 + 96411471 96411511 41 CAACCTCGAGTTCTCTGACACCCGGTGAGTGCTACCACCCT CAACCTCGAGTTCTCTGACACACGGTGAGTGCTACCACCCT < 41bp 0.456517559170471 0.718573542279714 0.17324805 0.22555295 prediction 0.437147084559428 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96411491 chr9:96411492 synonymous SNV . 0 22 hm5C_associated_SNPs_120350 0 0 1 0 1 PHF2 chr9:96411494 5'GT 96411494 Upstream 3bp
chr10 292775 292775 1 + T C UCEC 292772 + 292752 292792 41 CATCGGCTGCACGTGAAGCGCAGTATGGGTTGGAAAAAGGC CATCGGCTGCACGTGAAGCGCAGCATGGGTTGGAAAAAGGC < 41bp 0.526901737975785 0.74547302292358 0.073180735 0.033279896 prediction 0.43714256989559 Functional Gain - ZMYND11 ENSG00000015171 CDS Human protein_coding chr10:292772 chr10:292775 synonymous SNV . 0 24 hm5C_associated_SNPs_120352 0 0 1 0 1 ZMYND11 chr10:292706 3'AG 292706 Downstream 70bp
chr20 58348477 58348477 1 + A G STAD 58348474 + 58348454 58348494 41 GCCGCGTCATTGAGGAGCTGCACAGGGCGCTGGCCACGAAG GCCGCGTCATTGAGGAGCTGCACGGGGCGCTGGCCACGAAG < 41bp 0.592202986601828 0.810766415702331 0.47664624 0.8293668 prediction 0.437126858201005 Functional Gain - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58348474 chr20:58348477 nonsynonymous SNV 0.980 3 24 hm5C_associated_SNPs_120357 0 0 0 0 1 PHACTR3 chr20:58348508 5'GT 58348508 Upstream 32bp
chr10 98079103 98079103 1 + T C BLCA 98079101 + 98079081 98079121 41 ACAAAAGATCTCCCAGTATGCGTGTCAGAGAAGAACCACTT ACAAAAGATCTCCCAGTATGCGCGTCAGAGAAGAACCACTT < 41bp 0.44016635653696 0.718559355567743 0.031865597 0.046342105 prediction 0.437118711135487 Functional Gain - DNTT ENSG00000107447 CDS Human protein_coding chr10:98079101 chr10:98079103 nonsynonymous SNV 0.489 4 23 hm5C_associated_SNPs_120360 0 0 0 0 2 DNTT chr10:98079019 3'AG 98079019 Downstream 85bp
chr10 98079103 98079103 1 + T C BLCA 98079101 + 98079081 98079121 41 ACAAAAGATCTCCCAGTATGCGTGTCAGAGAAGAACCACTT ACAAAAGATCTCCCAGTATGCGCGTCAGAGAAGAACCACTT < 41bp 0.44016635653696 0.718559355567743 0.031865597 0.046342105 prediction 0.437118711135487 Functional Gain - DNTT ENSG00000107447 CDS Human protein_coding chr10:98079101 chr10:98079103 nonsynonymous SNV 0.489 4 23 hm5C_associated_SNPs_120360 0 0 0 0 2 DNTT chr10:98079147 5'GT 98079147 Upstream 45bp
chr2 113955447 113955447 1 + C T SKCM 113955446 + 113955426 113955466 41 ACCAAGAAGCCGCACGTCTTCCAGCTGCGCACGGCTGACTG ACCAAGAAGCCGCACGTCTTCTAGCTGCGCACGGCTGACTG < 41bp 0.462123133381877 0.718559342377868 0.3595689 0.18245015 prediction 0.437118684755736 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113955446 chr2:113955447 stopgain 0.998 1 22 hm5C_associated_SNPs_120361 0 0 0 0 1 PSD4 chr2:113955490 5'GT 113955490 Upstream 44bp
chr15 81589340 81589340 1 + C G rs201624502 81589336 + 81589316 81589356 41 AGGGAGAAGCCCTAGTGCCTCTGCCGGCTGCCCAGGACCTG AGGGAGAAGCCCTAGTGCCTCTGCGGGCTGCCCAGGACCTG < 41bp 0.404944124009701 0.718557251171103 0.20488694 0.1649329 prediction 0.437114502342206 Functional Gain - IL16 ENSG00000172349 CDS Human protein_coding chr15:81589336 chr15:81589340 synonymous SNV . 0 25 hm5C_associated_SNPs_120363 0 0 0 0 1 IL16 chr15:81589419 5'GT 81589419 Upstream 80bp
chr1 150917540 150917540 1 + C T ESCA 150917539 + 150917519 150917559 41 GAAGGCACGTGGTGGAAGTCCCGAGTTGAGGAGGTGGATGG GAAGGCACGTGGTGGAAGTCCTGAGTTGAGGAGGTGGATGG < 41bp 0.588422004813441 0.806977828628553 0.19065982 0.19092318 prediction 0.437111647630223 Functional Gain - SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150917539 chr1:150917540 stopgain 0.998 1 22 hm5C_associated_SNPs_120364 0 0 1 0 1 SETDB1 chr1:150917584 5'GT 150917584 Upstream 45bp
chr11 9537837 9537837 1 + T C LIHC 9537835 + 9537815 9537855 41 CGCCCATCACAGTCCCCGCCCATGATGCAGTCATCTCCTCA CGCCCATCACAGTCCCCGCCCACGATGCAGTCATCTCCTCA < 41bp 0.642738209043101 0.861289515076492 0.07600713 0.062595785 prediction 0.437102612066782 Functional Gain - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9537835 chr11:9537837 synonymous SNV . 0 23 hm5C_associated_SNPs_120367 0 0 1 0 2 ZNF143 chr11:9537748 3'AG 9537748 Downstream 90bp
chr11 9537837 9537837 1 + T C LIHC 9537835 + 9537815 9537855 41 CGCCCATCACAGTCCCCGCCCATGATGCAGTCATCTCCTCA CGCCCATCACAGTCCCCGCCCACGATGCAGTCATCTCCTCA < 41bp 0.642738209043101 0.861289515076492 0.07600713 0.062595785 prediction 0.437102612066782 Functional Gain - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9537835 chr11:9537837 synonymous SNV . 0 23 hm5C_associated_SNPs_120367 0 0 1 0 2 ZNF143 chr11:9537909 5'GT 9537909 Upstream 73bp
chr1 192548286 192548286 1 + C A ACC 192548282 + 192548262 192548302 41 TTTAGATCAATATTGACTTCCGCACTCGAGAATCTACAGCC TTTAGATCAATATTGACTTCCGCAATCGAGAATCTACAGCC < 41bp 0.318042044099775 0.718551214278785 0.02284652 0.014354289 prediction 0.43710242855757 Functional Gain - RGS1 ENSG00000090104 CDS Human protein_coding chr1:192548282 chr1:192548286 nonsynonymous SNV 0.941 4 25 hm5C_associated_SNPs_120368 0 0 0 0 1 RGS1 chr1:192548267 3'AG 192548267 Downstream 20bp
chrX 48559061 48559061 1 + C T SARC 48559060 + 48559040 48559080 41 CGATATGACCTCTGCATCTTCCGCACGGATGATGGGCGTGG CGATATGACCTCTGCATCTTCTGCACGGATGATGGGCGTGG < 41bp 0.45667205489693 0.718545493753997 0.11707878 0.18267366 prediction 0.437090987507995 Functional Gain - SUV39H1 ENSG00000101945 CDS Human protein_coding chrX:48559060 chrX:48559061 nonsynonymous SNV 0.940 5 22 hm5C_associated_SNPs_120373 0 0 1 0 1 SUV39H1 chrX:48559144 5'GT 48559144 Upstream 84bp
chr7 98256612 98256612 1 + C A LUAD 98256608 + 98256588 98256628 41 ACTGGGGAGAACCTGGCCCCCTGGCACCCCATCAAGCCCGG ACTGGGGAGAACCTGGCCCCCTGGAACCCCATCAAGCCCGG < 41bp 0.722772903918552 0.941313014996184 0.15931165 0.374854 prediction 0.437080222155265 Functional Gain - NPTX2 ENSG00000106236 CDS Human protein_coding chr7:98256608 chr7:98256612 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_120375 0 0 0 0 1 NPTX2 chr7:98256656 5'GT 98256656 Upstream 45bp
chr1 33945280 33945280 1 + C T COAD 33945279 + 33945259 33945299 41 GCCTTGGTGGAGGATTGGCACCGAGAGACCAGGACTGCAGG GCCTTGGTGGAGGATTGGCACTGAGAGACCAGGACTGCAGG < 41bp 0.484285439325737 0.718538125360958 0.2939762 0.20113829 prediction 0.437076250721915 Functional Gain - ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33945279 chr1:33945280 stopgain 0.930 0 22 hm5C_associated_SNPs_120376 0 0 0 0 1 ZSCAN20 chr1:33945306 5'GT 33945306 Upstream 27bp
chr19 41600212 41600212 1 + C T LUSC 41600211 + 41600191 41600231 41 CGGCAGCCCAAGTTTGAGGACCGGGCCAAGATGCCCTACAC CGGCAGCCCAAGTTTGAGGACTGGGCCAAGATGCCCTACAC < 41bp 0.471524252037844 0.718523098851634 0.87166035 0.627162 prediction 0.437046197703269 Functional Gain - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41600211 chr19:41600212 nonsynonymous SNV 0.601 3 22 hm5C_associated_SNPs_120378 0 0 0 0 1 CYP2A13 chr19:41600150 3'AG 41600150 Downstream 63bp
chr10 43600497 43600497 1 + C T rs544252468 43600496 + 43600476 43600516 41 GGAGAAGTACGAGCTGGTGGCCGTGTGCACCGTGCACGCCG GGAGAAGTACGAGCTGGTGGCTGTGTGCACCGTGCACGCCG < 41bp 0.538537588602219 0.757055429836078 0.80414975 0.43810463 prediction 0.437035682467718 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43600496 chr10:43600497 synonymous SNV . 0 22 hm5C_associated_SNPs_120382 0 0 0 0 1 RET chr10:43600400 3'AG 43600400 Downstream 98bp
chr19 14710863 14710863 1 + C A LUAD 14710859 + 14710839 14710879 41 CCAGACTGCCGCCGAATTACCTGTCCTGAAGGCTGGCTGCC CCAGACTGCCGCCGAATTACCTGTACTGAAGGCTGGCTGCC < 41bp 0.306329974952297 0.718513432538788 0.2267107 0.19756657 prediction 0.437026865077576 Functional Gain - CLEC17A ENSG00000187912 CDS Human protein_coding chr19:14710859 chr19:14710863 nonsynonymous SNV 0.163 3 25 hm5C_associated_SNPs_120383 0 0 0 0 1 CLEC17A chr19:14710843 3'AG 14710843 Downstream 21bp
chr11 128781254 128781254 1 + C A LUAD 128781250 + 128781230 128781270 41 ACCCCAAGAAGATTCCAAAACAGGCCCGCGATTATGTCCCC ACCCCAAGAAGATTCCAAAACAGGACCGCGATTATGTCCCC < 41bp 0.718965706104254 0.937476363629117 0.12888336 0.16694355 prediction 0.437021315049725 Functional Gain - KCNJ5 ENSG00000120457 CDS Human protein_coding chr11:128781250 chr11:128781254 nonsynonymous SNV 0.989 3 25 hm5C_associated_SNPs_120384 1 0 0 0 1 KCNJ5 chr11:128781159 3'AG 128781159 Downstream 96bp
chr17 72345485 72345485 1 + C T UCEC 72345484 + 72345464 72345504 41 CGGGGTGACATCCGCCACATCCAAGGTGCGCCTGTGGGTCT CGGGGTGACATCCGCCACATCTAAGGTGCGCCTGTGGGTCT < 41bp 0.479632208291166 0.718506712955276 0.8292502 0.7154773 prediction 0.437013425910552 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72345484 chr17:72345485 stopgain 0.998 0 22 hm5C_associated_SNPs_120385 0 0 0 0 1 KIF19 chr17:72345488 5'GT 72345488 Upstream 4bp
chr11 65721141 65721141 1 + C A UCEC 65721137 + 65721117 65721157 41 GTACAGCGGCAGGTGGCCCACTGCCTGGCAGCCTACGCACC GTACAGCGGCAGGTGGCCCACTGCATGGCAGCCTACGCACC < 41bp 0.722149993092187 0.940655304362309 0.11652818 0.23037544 prediction 0.437010622540244 Functional Gain - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65721137 chr11:65721141 unknown 0.994 2 25 hm5C_associated_SNPs_120387 0 0 0 0 1 TSGA10IP chr11:65721208 5'GT 65721208 Upstream 68bp
chr19 56200241 56200241 1 + T C STAD 56200239 + 56200219 56200259 41 TCTCACCCGCCCTCCAGCCTCATCAGCAGCTGTGGGCTCAG TCTCACCCGCCCTCCAGCCTCACCAGCAGCTGTGGGCTCAG < 41bp 0.612638603342385 0.831136058575019 0.21492359 0.3365121 prediction 0.436994910465267 Functional Gain - EPN1 ENSG00000063245 CDS Human protein_coding chr19:56200239 chr19:56200241 nonsynonymous SNV 0.921 2 23 hm5C_associated_SNPs_120389 0 0 1 0 1 EPN1 chr19:56200236 3'AG 56200236 Downstream 6bp
chr7 99818642 99818642 1 + C T UCEC 99818641 + 99818621 99818661 41 CTACTTTGGACACAGCTCACCCCCATGGGGGGCCGTCCTGG CTACTTTGGACACAGCTCACCTCCATGGGGGGCCGTCCTGG < 41bp 0.579322083218639 0.797812527883734 0.014792085 0.96691036 prediction 0.43698088933019 Functional Gain - PVRIG ENSG00000213413 CDS Human protein_coding chr7:99818641 chr7:99818642 nonsynonymous SNV 0.025 0 22 hm5C_associated_SNPs_120391 0 0 0 0 1 PVRIG chr7:99818551 3'AG 99818551 Downstream 92bp
chr2 128390878 128390878 1 + C T rs187045307 128390877 + 128390857 128390897 41 GCACCAGGTGGAGGTGGAGGCCGCAGAGCAGAACGTCTCCC GCACCAGGTGGAGGTGGAGGCTGCAGAGCAGAACGTCTCCC < 41bp 0.570329431725023 0.788808813314296 0.67105293 0.8124956 prediction 0.436958763178545 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128390877 chr2:128390878 synonymous SNV . 0 22 hm5C_associated_SNPs_120397 0 0 0 0 2 MYO7B chr2:128390833 3'AG 128390833 Downstream 46bp
chr2 128390878 128390878 1 + C T rs187045307 128390877 + 128390857 128390897 41 GCACCAGGTGGAGGTGGAGGCCGCAGAGCAGAACGTCTCCC GCACCAGGTGGAGGTGGAGGCTGCAGAGCAGAACGTCTCCC < 41bp 0.570329431725023 0.788808813314296 0.67105293 0.8124956 prediction 0.436958763178545 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128390877 chr2:128390878 synonymous SNV . 0 22 hm5C_associated_SNPs_120397 0 0 0 0 2 MYO7B chr2:128390938 5'GT 128390938 Upstream 61bp
chr2 27669207 27669207 1 + T C CESC 27669205 + 27669185 27669225 41 CGCAAGAGTGAAACAGAAAGCCTGGCAGCCACGGTTTCCTG CGCAAGAGTGAAACAGAAAGCCCGGCAGCCACGGTTTCCTG < 41bp 0.465632897591348 0.718477209706694 0.15155533 0.22825423 prediction 0.436954419413389 Functional Gain - IFT172 ENSG00000138002 CDS Human protein_coding chr2:27669205 chr2:27669207 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_120398 0 0 0 0 1 IFT172 chr2:27669168 3'AG 27669168 Downstream 40bp
chr16 69184787 69184787 1 + C T SKCM 69184786 + 69184766 69184806 41 AAGAATTACGATGCCGCTCTCCGAAAAATCACCTTTCCCCA AAGAATTACGATGCCGCTCTCTGAAAAATCACCTTTCCCCA < 41bp 0.453686729104948 0.718472686400695 0.30833086 0.06846538 prediction 0.43694537280139 Functional Gain - UTP4 ENSG00000141076 CDS Human protein_coding chr16:69184786 chr16:69184787 stopgain 0.999 1 22 hm5C_associated_SNPs_120400 0 0 1 0 2 UTP4 chr16:69184716 3'AG 69184716 Downstream 72bp
chr16 69184787 69184787 1 + C T SKCM 69184786 + 69184766 69184806 41 AAGAATTACGATGCCGCTCTCCGAAAAATCACCTTTCCCCA AAGAATTACGATGCCGCTCTCTGAAAAATCACCTTTCCCCA < 41bp 0.453686729104948 0.718472686400695 0.30833086 0.06846538 prediction 0.43694537280139 Functional Gain - UTP4 ENSG00000141076 CDS Human protein_coding chr16:69184786 chr16:69184787 stopgain 0.999 1 22 hm5C_associated_SNPs_120400 0 0 1 0 2 UTP4 chr16:69184807 5'GT 69184807 Upstream 21bp
chr17 37815004 37815004 1 + C T UCEC 37815003 + 37814983 37815023 41 GCCGCCCAGGTTGCTGTTGCCCGTGGACCCCTGCTGTTCTC GCCGCCCAGGTTGCTGTTGCCTGTGGACCCCTGCTGTTCTC < 41bp 0.580988509124769 0.799458837323927 0.0326142 0.0060105026 prediction 0.436940656398316 Functional Gain - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37815003 chr17:37815004 nonsynonymous SNV 0.901 2 22 hm5C_associated_SNPs_120401 0 0 1 1 2 STARD3 chr17:37814962 3'AG 37814962 Downstream 43bp
chr17 37815004 37815004 1 + C T UCEC 37815003 + 37814983 37815023 41 GCCGCCCAGGTTGCTGTTGCCCGTGGACCCCTGCTGTTCTC GCCGCCCAGGTTGCTGTTGCCTGTGGACCCCTGCTGTTCTC < 41bp 0.580988509124769 0.799458837323927 0.0326142 0.0060105026 prediction 0.436940656398316 Functional Gain - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37815003 chr17:37815004 nonsynonymous SNV 0.901 2 22 hm5C_associated_SNPs_120401 0 0 1 1 2 STARD3 chr17:37814975 3'AG 37814975 Downstream 30bp
chr19 46021024 46021024 1 + C A LUSC 46021023 + 46021003 46021043 41 CCCCAGGCCTTCAGCCGCGTCCAGATCTACCACAACCCCAC CCCCAGGCCTTCAGCCGCGTCAAGATCTACCACAACCCCAC < 41bp 0.610431691845522 0.828901344566543 0.37252057 0.26281032 prediction 0.436939305442043 Functional Gain - VASP ENSG00000125753 CDS Human protein_coding chr19:46021023 chr19:46021024 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_120402 0 0 1 0 1 VASP chr19:46021092 5'GT 46021092 Upstream 69bp
chr7 76912043 76912043 1 + C T OV 76912042 + 76912022 76912062 41 CAAAGACAAATTTGTGTGACCCAGAAATTACTGCCAGCCAA CAAAGACAAATTTGTGTGACCTAGAAATTACTGCCAGCCAA < 41bp 0.589830324994247 0.808296186961887 0.21082586 0.09729341 prediction 0.436931723935278 Functional Gain - CCDC146 ENSG00000135205 CDS Human protein_coding chr7:76912042 chr7:76912043 stopgain 0.392 0 22 hm5C_associated_SNPs_120407 0 0 0 0 1 CCDC146 chr7:76912102 5'GT 76912102 Upstream 60bp
chr21 35201967 35201967 1 + C T SKCM 35201966 + 35201946 35201986 41 CCTCATACACCGCCACCGGCCCCGAGCAGCTCACTCTCGCC CCTCATACACCGCCACCGGCCTCGAGCAGCTCACTCTCGCC < 41bp 0.567399991299418 0.785864569916994 0.27284354 0.48969218 prediction 0.436929157235153 Functional Gain - ITSN1 ENSG00000205726 CDS Human protein_coding chr21:35201966 chr21:35201967 nonsynonymous SNV 0.989 3 22 hm5C_associated_SNPs_120409 0 0 1 0 2 ITSN1 chr21:35201928 3'AG 35201928 Downstream 40bp
chr21 35201967 35201967 1 + C T SKCM 35201966 + 35201946 35201986 41 CCTCATACACCGCCACCGGCCCCGAGCAGCTCACTCTCGCC CCTCATACACCGCCACCGGCCTCGAGCAGCTCACTCTCGCC < 41bp 0.567399991299418 0.785864569916994 0.27284354 0.48969218 prediction 0.436929157235153 Functional Gain - ITSN1 ENSG00000205726 CDS Human protein_coding chr21:35201966 chr21:35201967 nonsynonymous SNV 0.989 3 22 hm5C_associated_SNPs_120409 0 0 1 0 2 ITSN1 chr21:35202049 5'GT 35202049 Upstream 83bp
chr10 135123764 135123764 1 + C T HNSC 135123763 + 135123743 135123783 41 CACCTGTACCCCGCGGACTTCCGGTTTGATAAGCCAAAGAA CACCTGTACCCCGCGGACTTCTGGTTTGATAAGCCAAAGAA < 41bp 0.456340114396163 0.718460002646166 0.6168735 0.49564153 prediction 0.436920005292332 Functional Gain - ZNF511 ENSG00000198546 CDS Human protein_coding chr10:135123763 chr10:135123764 nonsynonymous SNV 0.913 5 22 hm5C_associated_SNPs_120412 0 0 1 1 2 ZNF511 chr10:135123668 3'AG 135123668 Downstream 97bp
chr10 135123764 135123764 1 + C T HNSC 135123763 + 135123743 135123783 41 CACCTGTACCCCGCGGACTTCCGGTTTGATAAGCCAAAGAA CACCTGTACCCCGCGGACTTCTGGTTTGATAAGCCAAAGAA < 41bp 0.456340114396163 0.718460002646166 0.6168735 0.49564153 prediction 0.436920005292332 Functional Gain - ZNF511 ENSG00000198546 CDS Human protein_coding chr10:135123763 chr10:135123764 nonsynonymous SNV 0.913 5 22 hm5C_associated_SNPs_120412 0 0 1 1 2 ZNF511 chr10:135123792 5'GT 135123792 Upstream 29bp
chr19 14675931 14675931 1 + C T COAD 14675930 + 14675910 14675950 41 GGCCCTGCGGGACCTGCGGCCCGCTGGTGAGTGCCTGCTGG GGCCCTGCGGGACCTGCGGCCTGCTGGTGAGTGCCTGCTGG < 41bp 0.570215249468669 0.788660441640403 0.24066857 0.1966371 prediction 0.436890384343469 Functional Gain - TECR ENSG00000099797 CDS Human protein_coding chr19:14675930 chr19:14675931 synonymous SNV . 0 22 hm5C_associated_SNPs_120417 0 0 1 0 3 TECR chr19:14675878 3'AG 14675878 Downstream 54bp
chr19 14675931 14675931 1 + C T COAD 14675930 + 14675910 14675950 41 GGCCCTGCGGGACCTGCGGCCCGCTGGTGAGTGCCTGCTGG GGCCCTGCGGGACCTGCGGCCTGCTGGTGAGTGCCTGCTGG < 41bp 0.570215249468669 0.788660441640403 0.24066857 0.1966371 prediction 0.436890384343469 Functional Gain - TECR ENSG00000099797 CDS Human protein_coding chr19:14675930 chr19:14675931 synonymous SNV . 0 22 hm5C_associated_SNPs_120417 0 0 1 0 3 TECR chr19:14675935 5'GT 14675935 Upstream 5bp
chr19 14675931 14675931 1 + C T COAD 14675930 + 14675910 14675950 41 GGCCCTGCGGGACCTGCGGCCCGCTGGTGAGTGCCTGCTGG GGCCCTGCGGGACCTGCGGCCTGCTGGTGAGTGCCTGCTGG < 41bp 0.570215249468669 0.788660441640403 0.24066857 0.1966371 prediction 0.436890384343469 Functional Gain - TECR ENSG00000099797 CDS Human protein_coding chr19:14675930 chr19:14675931 synonymous SNV . 0 22 hm5C_associated_SNPs_120417 0 0 1 0 3 TECR chr19:14676014 5'GT 14676014 Upstream 84bp
chr11 76834830 76834830 1 + C T rs114632044 76834829 + 76834809 76834849 41 GCCCTGCATACCCTCCACCTCCGGGACCGAAATAGCCGGCA GCCCTGCATACCCTCCACCTCTGGGACCGAAATAGCCGGCA < 41bp 0.56415493722097 0.782598892305988 0.5375962 0.31994683 prediction 0.436887910170036 Functional Gain - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76834829 chr11:76834830 nonsynonymous SNV 0.911 2 22 hm5C_associated_SNPs_120418 0 0 0 0 1 CAPN5 chr11:76834734 3'AG 76834734 Downstream 97bp
chr9 91077457 91077457 1 + C T UCEC 91077456 + 91077436 91077476 41 AGCAAACCTGTTTCCCAGCCCCGGCGGAACATCGTAGGCTG AGCAAACCTGTTTCCCAGCCCTGGCGGAACATCGTAGGCTG < 41bp 0.464538340946428 0.718434055042191 0.33901966 0.211806 prediction 0.436868110084381 Functional Gain - SPIN1 ENSG00000106723 CDS Human protein_coding chr9:91077456 chr9:91077457 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_120423 0 0 1 0 1 SPIN1 chr9:91077411 3'AG 91077411 Downstream 47bp
chr21 35183432 35183432 1 + C T SKCM 35183431 + 35183411 35183451 41 GATTCAACATCTGCCCCTGCCCCCAAACTGGCCTTGCGTGA GATTCAACATCTGCCCCTGCCTCCAAACTGGCCTTGCGTGA < 41bp 0.556280079934077 0.774712375541114 0.07103294 0.9689252 prediction 0.436864591214073 Functional Gain - ITSN1 ENSG00000205726 CDS Human protein_coding chr21:35183431 chr21:35183432 nonsynonymous SNV 0.877 3 22 hm5C_associated_SNPs_120425 0 0 1 0 1 ITSN1 chr21:35183526 5'GT 35183526 Upstream 95bp
chr4 154523748 154523748 1 + C T UCEC 154523747 + 154523727 154523767 41 TCGGGACCTAAGTCTTGTAACCGCAGCGGACCTAGAATTTC TCGGGACCTAAGTCTTGTAACTGCAGCGGACCTAGAATTTC < 41bp 0.454285774370824 0.718431473682546 0.2652884 0.24076274 prediction 0.436862947365091 Functional Gain - TMEM131L ENSG00000121210 CDS Human protein_coding chr4:154523747 chr4:154523748 synonymous SNV . 0 22 hm5C_associated_SNPs_120426 0 0 1 0 1 TMEM131L chr4:154523694 3'AG 154523694 Downstream 55bp
chr6 39033979 39033979 1 + C A LUAD 39033978 + 39033958 39033998 41 CCCCGTGTGCCACAGAGCTCCCCGGAGGAGCAGCTCCTGTT CCCCGTGTGCCACAGAGCTCCACGGAGGAGCAGCTCCTGTT < 41bp 0.453136617202883 0.718428042977705 0.5724912 0.8611485 prediction 0.43685608595541 Functional Gain - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39033978 chr6:39033979 nonsynonymous SNV 0.140 0 22 hm5C_associated_SNPs_120427 0 0 0 2 1 GLP1R chr6:39033973 3'AG 39033973 Downstream 7bp
chr19 22836814 22836814 1 + C T UCEC 22836813 + 22836793 22836833 41 CATGAGATGGTAGCTGAACCCCCAGGTAGGTGAGAGTGAAA CATGAGATGGTAGCTGAACCCTCAGGTAGGTGAGAGTGAAA < 41bp 0.552142857887936 0.770559530466271 0.07100722 0.062406182 prediction 0.43683334515667 Functional Gain - ZNF492 ENSG00000229676 CDS Human protein_coding chr19:22836813 chr19:22836814 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_120429 0 0 0 0 2 ZNF492 chr19:22836722 3'AG 22836722 Downstream 93bp
chr19 22836814 22836814 1 + C T UCEC 22836813 + 22836793 22836833 41 CATGAGATGGTAGCTGAACCCCCAGGTAGGTGAGAGTGAAA CATGAGATGGTAGCTGAACCCTCAGGTAGGTGAGAGTGAAA < 41bp 0.552142857887936 0.770559530466271 0.07100722 0.062406182 prediction 0.43683334515667 Functional Gain - ZNF492 ENSG00000229676 CDS Human protein_coding chr19:22836813 chr19:22836814 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_120429 0 0 0 0 2 ZNF492 chr19:22836817 5'GT 22836817 Upstream 4bp
chr5 161569232 161569232 1 + C A LUAD 161569231 + 161569211 161569251 41 AGAATGGGATACTTTACCATCCAGACCTATATCCCCTGCAC AGAATGGGATACTTTACCATCAAGACCTATATCCCCTGCAC < 41bp 0.600556104079345 0.818971668269931 0.10985169 0.352812 prediction 0.436831128381173 Functional Gain - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161569231 chr5:161569232 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_120430 0 0 0 0 2 GABRG2 chr5:161569170 3'AG 161569170 Downstream 63bp
chr5 161569232 161569232 1 + C A LUAD 161569231 + 161569211 161569251 41 AGAATGGGATACTTTACCATCCAGACCTATATCCCCTGCAC AGAATGGGATACTTTACCATCAAGACCTATATCCCCTGCAC < 41bp 0.600556104079345 0.818971668269931 0.10985169 0.352812 prediction 0.436831128381173 Functional Gain - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161569231 chr5:161569232 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_120430 0 0 0 0 2 GABRG2 chr5:161569322 5'GT 161569322 Upstream 91bp
chr16 57503194 57503194 1 + C T STAD 57503193 + 57503173 57503213 41 GACCTCATCTCCAACAGCCCCCGGGTCATTCCGGTCAGTGC GACCTCATCTCCAACAGCCCCTGGGTCATTCCGGTCAGTGC < 41bp 0.590953264649254 0.809366731579086 0.2490035 0.09097028 prediction 0.436826933859665 Functional Gain - POLR2C ENSG00000102978 CDS Human protein_coding chr16:57503193 chr16:57503194 nonsynonymous SNV 0.798 4 22 hm5C_associated_SNPs_120431 0 0 1 0 1 POLR2C chr16:57503205 5'GT 57503205 Upstream 12bp
chr17 18004845 18004845 1 + T A rs61256737 18004841 + 18004821 18004861 41 GAAGTGCTTTTCCGAGAAGACTGCTCCCCGGACGAGTTCAT GAAGTGCTTTTCCGAGAAGACTGCACCCCGGACGAGTTCAT < 41bp 0.365473491049987 0.718403784656588 0.06813398 0.08945039 prediction 0.436807569313175 Functional Gain - DRG2 ENSG00000108591 CDS Human other chr17:18004841 chr17:18004845 nonsynonymous SNV 0.961 1 25 hm5C_associated_SNPs_120435 0 0 1 0 2 DRG2 chr17:18004807 3'AG 18004807 Downstream 39bp
chr17 18004845 18004845 1 + T A rs61256737 18004841 + 18004821 18004861 41 GAAGTGCTTTTCCGAGAAGACTGCTCCCCGGACGAGTTCAT GAAGTGCTTTTCCGAGAAGACTGCACCCCGGACGAGTTCAT < 41bp 0.365473491049987 0.718403784656588 0.06813398 0.08945039 prediction 0.436807569313175 Functional Gain - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18004841 chr17:18004845 nonsynonymous SNV 0.961 1 25 hm5C_associated_SNPs_120435 0 0 1 0 2 DRG2 chr17:18004904 5'GT 18004904 Upstream 60bp
chr3 52825625 52825625 1 + C T UCEC 52825624 + 52825604 52825644 41 GCCACGATGGTGGTGAGGAACCGCCGGCTCACGGTCACCAG GCCACGATGGTGGTGAGGAACTGCCGGCTCACGGTCACCAG < 41bp 0.582201734157584 0.800592054827787 0.40999258 0.48933348 prediction 0.436780641340405 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52825624 chr3:52825625 nonsynonymous SNV 0.028 2 22 hm5C_associated_SNPs_120436 0 0 1 0 2 ITIH1 chr3:52825533 3'AG 52825533 Downstream 93bp
chr3 52825625 52825625 1 + C T UCEC 52825624 + 52825604 52825644 41 GCCACGATGGTGGTGAGGAACCGCCGGCTCACGGTCACCAG GCCACGATGGTGGTGAGGAACTGCCGGCTCACGGTCACCAG < 41bp 0.582201734157584 0.800592054827787 0.40999258 0.48933348 prediction 0.436780641340405 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52825624 chr3:52825625 nonsynonymous SNV 0.028 2 22 hm5C_associated_SNPs_120436 0 0 1 0 2 ITIH1 chr3:52825644 5'GT 52825644 Upstream 20bp
chr5 148627447 148627447 1 + C T LGG 148627446 + 148627426 148627466 41 CCCCGGAGCTCCACCAGCAGCCGGGAAGCCCTGCACACAGC CCCCGGAGCTCCACCAGCAGCTGGGAAGCCCTGCACACAGC < 41bp 0.606913966394636 0.825303884781938 0.7667905 0.8734201 prediction 0.436779836774603 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148627446 chr5:148627447 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_120437 0 0 0 0 1 ABLIM3 chr5:148627492 5'GT 148627492 Upstream 46bp
chr7 98990335 98990335 1 + C T rs530272604 98990334 + 98990314 98990354 41 GCTGTTCACCTATGACGCCGCCGCGGGGATGCTGAGCTTCG GCTGTTCACCTATGACGCCGCTGCGGGGATGCTGAGCTTCG < 41bp 0.477823213771113 0.71838481669679 0.31369168 0.21611863 prediction 0.43676963339358 Functional Gain - ARPC1B ENSG00000130429 CDS Human protein_coding chr7:98990334 chr7:98990335 synonymous SNV . 0 22 hm5C_associated_SNPs_120439 0 0 1 0 1 ARPC1B chr7:98990294 3'AG 98990294 Downstream 42bp
chr21 41137552 41137552 1 + A G LIHC 41137549 + 41137529 41137569 41 TCGCTTCAACTGCACCGTCTCCCAGGGCTGGAAGCTCATCA TCGCTTCAACTGCACCGTCTCCCGGGGCTGGAAGCTCATCA < 41bp 0.579307915549779 0.797686887208777 0.0343965 0.18571213 prediction 0.436757943317996 Functional Gain - IGSF5 ENSG00000183067 CDS Human protein_coding chr21:41137549 chr21:41137552 nonsynonymous SNV 0.320 0 24 hm5C_associated_SNPs_120442 0 0 0 0 1 IGSF5 chr21:41137462 3'AG 41137462 Downstream 91bp
chr7 114298229 114298229 1 + C T SKCM 114298228 + 114298208 114298248 41 GCCCCAGTCACCCCGATTACCCAGGGACCCTCAGTAATCAC GCCCCAGTCACCCCGATTACCTAGGGACCCTCAGTAATCAC < 41bp 0.534401660152558 0.752779248254658 0.8070437 0.101178825 prediction 0.436755176204201 Functional Gain - FOXP2 ENSG00000128573 CDS Human protein_coding chr7:114298228 chr7:114298229 stopgain 1.000 1 22 hm5C_associated_SNPs_120443 0 0 1 0 1 FOXP2 chr7:114298322 5'GT 114298322 Upstream 94bp
chr9 390512 390512 1 + C A rs2297075 390511 + 390491 390531 41 CCTTCAGATGGTGGTCAGCACCGGAATGGTGAGAGAAACAG CCTTCAGATGGTGGTCAGCACAGGAATGGTGAGAGAAACAG < 41bp 0.477257273677326 0.718372637772492 0.25746244 0.35639474 prediction 0.436745275544983 Functional Gain - DOCK8 ENSG00000107099 CDS Human protein_coding chr9:390511 chr9:390512 synonymous SNV . 0 22 hm5C_associated_SNPs_120444 0 0 1 0 2 DOCK8 chr9:390471 3'AG 390471 Downstream 42bp
chr9 390512 390512 1 + C A rs2297075 390511 + 390491 390531 41 CCTTCAGATGGTGGTCAGCACCGGAATGGTGAGAGAAACAG CCTTCAGATGGTGGTCAGCACAGGAATGGTGAGAGAAACAG < 41bp 0.477257273677326 0.718372637772492 0.25746244 0.35639474 prediction 0.436745275544983 Functional Gain - DOCK8 ENSG00000107099 CDS Human protein_coding chr9:390511 chr9:390512 synonymous SNV . 0 22 hm5C_associated_SNPs_120444 0 0 1 0 2 DOCK8 chr9:390566 5'GT 390566 Upstream 55bp
chr13 41636806 41636806 1 + A G LUAD 41636803 + 41636783 41636823 41 GGACTACTGGAAGTCACAGCCAAAGAAATTCTGTGATTACT GGACTACTGGAAGTCACAGCCAAGGAAATTCTGTGATTACT < 41bp 0.523513348073485 0.74188429920791 0.3698166 0.72944164 prediction 0.436741902268849 Functional Gain - WBP4 ENSG00000120688 CDS Human protein_coding chr13:41636803 chr13:41636806 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_120445 0 0 1 0 2 WBP4 chr13:41636780 3'AG 41636780 Downstream 27bp
chr13 41636806 41636806 1 + A G LUAD 41636803 + 41636783 41636823 41 GGACTACTGGAAGTCACAGCCAAAGAAATTCTGTGATTACT GGACTACTGGAAGTCACAGCCAAGGAAATTCTGTGATTACT < 41bp 0.523513348073485 0.74188429920791 0.3698166 0.72944164 prediction 0.436741902268849 Functional Gain - WBP4 ENSG00000120688 CDS Human protein_coding chr13:41636803 chr13:41636806 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_120445 0 0 1 0 2 WBP4 chr13:41636852 5'GT 41636852 Upstream 47bp
chr3 101535718 101535718 1 + A G rs115260082 101535715 + 101535695 101535735 41 TATAAAGACCAGTGGAGGCCCAGAAAGTTTAAGATGCGTCA TATAAAGACCAGTGGAGGCCCAGGAAGTTTAAGATGCGTCA < 41bp 0.509583739139147 0.727951401079483 0.05673942 0.21861252 prediction 0.436735323880673 Functional Gain - NXPE3 ENSG00000144815 CDS Human protein_coding chr3:101535715 chr3:101535718 synonymous SNV . 0 24 hm5C_associated_SNPs_120446 0 0 0 0 1 NXPE3 chr3:101535639 3'AG 101535639 Downstream 80bp
chr11 61727416 61727416 1 + C T PAAD 61727415 + 61727395 61727435 41 AGGACCTGCCTCGGATGGAGCCGGACATGTACTGGAATAAG AGGACCTGCCTCGGATGGAGCTGGACATGTACTGGAATAAG < 41bp 0.553242203909768 0.771602562211057 0.56215495 0.3817946 prediction 0.436720716602579 Functional Gain - BEST1 ENSG00000167995 CDS Human other chr11:61727415 chr11:61727416 nonsynonymous SNV 0.566 2 22 hm5C_associated_SNPs_120449 0 0 0 0 2 BEST1 chr11:61727364 3'AG 61727364 Downstream 53bp
chr11 61727416 61727416 1 + C T PAAD 61727415 + 61727395 61727435 41 AGGACCTGCCTCGGATGGAGCCGGACATGTACTGGAATAAG AGGACCTGCCTCGGATGGAGCTGGACATGTACTGGAATAAG < 41bp 0.553242203909768 0.771602562211057 0.56215495 0.3817946 prediction 0.436720716602579 Functional Gain - BEST1 ENSG00000167995 CDS Human protein_coding chr11:61727415 chr11:61727416 nonsynonymous SNV 0.566 2 22 hm5C_associated_SNPs_120449 0 0 0 0 2 BEST1 chr11:61727515 5'GT 61727515 Upstream 100bp
chr9 130566579 130566579 1 + C A UCEC 130566575 + 130566555 130566595 41 GGTTGCCAGGATGCCGTGCGCATGCTCAATACCCTGCAGAC GGTTGCCAGGATGCCGTGCGCATGATCAATACCCTGCAGAC < 41bp 0.314333516814027 0.718357928402272 0.1095964 0.39044896 prediction 0.436715856804544 Functional Gain - FPGS ENSG00000136877 CDS Human protein_coding chr9:130566575 chr9:130566579 nonsynonymous SNV 0.953 4 25 hm5C_associated_SNPs_120452 0 0 1 0 1 FPGS chr9:130566564 3'AG 130566564 Downstream 16bp
chr11 57505440 57505440 1 + A G LGG 57505437 + 57505417 57505457 41 ATGTTTAGTAAAGTGGCCAACACAATTCTTTTCTTCCGCTT ATGTTTAGTAAAGTGGCCAACACGATTCTTTTCTTCCGCTT < 41bp 0.489026737129748 0.718354098564081 0.26982015 0.14138585 prediction 0.436708197128161 Functional Gain - TMX2 ENSG00000213593 CDS Human protein_coding chr11:57505437 chr11:57505440 synonymous SNV . 0 24 hm5C_associated_SNPs_120453 0 0 1 0 2 TMX2 chr11:57505385 3'AG 57505385 Downstream 56bp
chr11 57505440 57505440 1 + A G LGG 57505437 + 57505417 57505457 41 ATGTTTAGTAAAGTGGCCAACACAATTCTTTTCTTCCGCTT ATGTTTAGTAAAGTGGCCAACACGATTCTTTTCTTCCGCTT < 41bp 0.489026737129748 0.718354098564081 0.26982015 0.14138585 prediction 0.436708197128161 Functional Gain - TMX2 ENSG00000213593 CDS Human protein_coding chr11:57505437 chr11:57505440 synonymous SNV . 0 24 hm5C_associated_SNPs_120453 0 0 1 0 2 TMX2 chr11:57505498 5'GT 57505498 Upstream 59bp
chr11 61257985 61257985 1 + A G LIHC 61257982 + 61257962 61258002 41 CCTCCCTGCAGAACCCTGACCTCAGCTGACCCCTTCTACCA CCTCCCTGCAGAACCCTGACCTCGGCTGACCCCTTCTACCA < 41bp 0.574485385921498 0.792838222068757 0.03128931 0.045981735 prediction 0.436705672294519 Functional Gain - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61257982 chr11:61257985 synonymous SNV . 0 24 hm5C_associated_SNPs_120454 0 0 0 0 2 PPP1R32 chr11:61257973 3'AG 61257973 Downstream 13bp
chr11 61257985 61257985 1 + A G LIHC 61257982 + 61257962 61258002 41 CCTCCCTGCAGAACCCTGACCTCAGCTGACCCCTTCTACCA CCTCCCTGCAGAACCCTGACCTCGGCTGACCCCTTCTACCA < 41bp 0.574485385921498 0.792838222068757 0.03128931 0.045981735 prediction 0.436705672294519 Functional Gain - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61257982 chr11:61257985 synonymous SNV . 0 24 hm5C_associated_SNPs_120454 0 0 0 0 2 PPP1R32 chr11:61258056 5'GT 61258056 Upstream 72bp
chr20 43566787 43566787 1 + A G rs11780 43566784 + 43566764 43566804 41 ATGCTGCTGGAGATTGACAACTCAGAGCTGTTGCTCATGCT ATGCTGCTGGAGATTGACAACTCGGAGCTGTTGCTCATGCT < 41bp 0.569912898586772 0.788265057453112 0.2643053 0.25442892 prediction 0.436704317732679 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43566784 chr20:43566787 nonsynonymous SNV 0.949 1 24 hm5C_associated_SNPs_120455 0 0 1 1 2 PABPC1L chr20:43566702 3'AG 43566702 Downstream 86bp
chr20 43566787 43566787 1 + A G rs11780 43566784 + 43566764 43566804 41 ATGCTGCTGGAGATTGACAACTCAGAGCTGTTGCTCATGCT ATGCTGCTGGAGATTGACAACTCGGAGCTGTTGCTCATGCT < 41bp 0.569912898586772 0.788265057453112 0.2643053 0.25442892 prediction 0.436704317732679 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43566784 chr20:43566787 nonsynonymous SNV 0.949 1 24 hm5C_associated_SNPs_120455 0 0 1 1 2 PABPC1L chr20:43566832 5'GT 43566832 Upstream 46bp
chr5 34934001 34934001 1 + A G CESC 34933998 + 34933978 34934018 41 ATATGATGTGTTGAGTGACCCTCAGGAAAGAGCATGGTGAG ATATGATGTGTTGAGTGACCCTCGGGAAAGAGCATGGTGAG < 41bp 0.54268717712535 0.761037799340213 0.004006326 0.034729034 prediction 0.436701244429727 Functional Gain - DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34933998 chr5:34934001 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_120456 0 0 1 0 2 DNAJC21 chr5:34933920 3'AG 34933920 Downstream 82bp
chr5 34934001 34934001 1 + A G CESC 34933998 + 34933978 34934018 41 ATATGATGTGTTGAGTGACCCTCAGGAAAGAGCATGGTGAG ATATGATGTGTTGAGTGACCCTCGGGAAAGAGCATGGTGAG < 41bp 0.54268717712535 0.761037799340213 0.004006326 0.034729034 prediction 0.436701244429727 Functional Gain - DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34933998 chr5:34934001 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_120456 0 0 1 0 2 DNAJC21 chr5:34934013 5'GT 34934013 Upstream 13bp
chr19 50103160 50103160 1 + C T SKCM 50103159 + 50103139 50103179 41 TTCCAGGGCCACCCCCTCTTCCGGGGCTCCCCAGTGCCAAC TTCCAGGGCCACCCCCTCTTCTGGGGCTCCCCAGTGCCAAC < 41bp 0.539907562651236 0.758251610881893 0.9261118 0.8356471 prediction 0.436688096461314 Functional Gain - PRR12 ENSG00000126464 CDS Human protein_coding chr19:50103159 chr19:50103160 nonsynonymous SNV 0.080 1 22 hm5C_associated_SNPs_120460 0 0 0 0 1 PRR12 chr19:50103195 5'GT 50103195 Upstream 36bp
chr1 63998406 63998406 1 + T A LUAD 63998402 + 63998382 63998422 41 AAATTTGGCTGATGTAAATGCTGATGGCAAATTTGACTACA AAATTTGGCTGATGTAAATGCTGAAGGCAAATTTGACTACA < 41bp 0.392306629397287 0.718343231408263 0.16566321 0.16523683 prediction 0.436686462816526 Functional Gain - EFCAB7 ENSG00000203965 CDS Human protein_coding chr1:63998402 chr1:63998406 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_120462 0 0 1 0 2 EFCAB7 chr1:63998341 3'AG 63998341 Downstream 66bp
chr1 63998406 63998406 1 + T A LUAD 63998402 + 63998382 63998422 41 AAATTTGGCTGATGTAAATGCTGATGGCAAATTTGACTACA AAATTTGGCTGATGTAAATGCTGAAGGCAAATTTGACTACA < 41bp 0.392306629397287 0.718343231408263 0.16566321 0.16523683 prediction 0.436686462816526 Functional Gain - EFCAB7 ENSG00000203965 CDS Human protein_coding chr1:63998402 chr1:63998406 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_120462 0 0 1 0 2 EFCAB7 chr1:63998427 5'GT 63998427 Upstream 22bp
chr4 83970343 83970343 1 + T C UCEC 83970341 + 83970321 83970361 41 GTAAATGAGAATGTCAGTCTCGTGATCTCGCGGCAGTTGCT GTAAATGAGAATGTCAGTCTCGCGATCTCGCGGCAGTTGCT < 41bp 0.641516171761828 0.859858740698776 0.874681 0.9001745 prediction 0.436685137873897 Functional Gain - COPS4 ENSG00000138663 CDS Human protein_coding chr4:83970341 chr4:83970343 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_120463 0 0 1 0 1 COPS4 chr4:83970319 3'AG 83970319 Downstream 25bp
chr11 76825338 76825338 1 + T C UCEC 76825335 + 76825315 76825355 41 TGGAGGCAACACAGCAGACGCACTGGTGGACTTCACGGGTG TGGAGGCAACACAGCAGACGCACCGGTGGACTTCACGGGTG < 41bp 0.5193534341367 0.737693456762343 0.28054237 0.13576847 prediction 0.436680045251285 Functional Gain - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76825335 chr11:76825338 nonsynonymous SNV 0.841 4 24 hm5C_associated_SNPs_120465 0 0 0 0 1 CAPN5 chr11:76825288 3'AG 76825288 Downstream 51bp
chr1 32655677 32655677 1 + C T UCEC 32655676 + 32655656 32655696 41 GAAGAAGGTGTGCAGCGGGCCCGGGAGGAGGAGGAGAAGCG GAAGAAGGTGTGCAGCGGGCCTGGGAGGAGGAGGAGAAGCG < 41bp 0.543841482709633 0.762180466713302 0.41600132 0.62053025 prediction 0.436677968007339 Functional Gain - TXLNA ENSG00000084652 CDS Human protein_coding chr1:32655676 chr1:32655677 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_120467 0 0 1 0 1 TXLNA chr1:32655656 3'AG 32655656 Downstream 22bp
chr8 11687925 11687925 1 + C T HNSC 11687924 + 11687904 11687944 41 TGTTTAACTTCTGTGCTATTCCACAGGTAGGGAAGGGGGCT TGTTTAACTTCTGTGCTATTCTACAGGTAGGGAAGGGGGCT < 41bp 0.595113125572344 0.813443920586524 0.13346681 0.42128617 prediction 0.43666159002836 Functional Gain - FDFT1 ENSG00000079459 CDS Human protein_coding chr8:11687924 chr8:11687925 nonsynonymous SNV 0.984 5 22 hm5C_associated_SNPs_120468 0 0 1 0 1 FDFT1 chr8:11687929 5'GT 11687929 Upstream 5bp
chr7 133848158 133848158 1 + C G DLBC 133848157 + 133848137 133848177 41 TTTCTGTTTTAGAGCAATAACCAGATTGAGATGATCACAGG TTTCTGTTTTAGAGCAATAACGAGATTGAGATGATCACAGG < 41bp 0.662053151048736 0.880380665658894 0.30681026 0.8365385 prediction 0.436655029220315 Functional Gain - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133848157 chr7:133848158 nonsynonymous SNV 0.135 0 22 hm5C_associated_SNPs_120470 0 0 0 0 1 LRGUK chr7:133848149 3'AG 133848149 Downstream 10bp
chr6 108492769 108492769 1 + C T LUSC 108492768 + 108492748 108492788 41 GGTTTTTTCAAACGGAGCATCCGAAGGAATAGGACCTATGT GGTTTTTTCAAACGGAGCATCTGAAGGAATAGGACCTATGT < 41bp 0.461482751421846 0.718324452434664 0.66768795 0.6113623 prediction 0.436648904869328 Functional Gain - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108492768 chr6:108492769 stopgain 0.998 1 22 hm5C_associated_SNPs_120474 0 0 0 0 1 NR2E1 chr6:108492807 5'GT 108492807 Upstream 39bp
chr4 146460985 146460985 1 + A G UCEC 146460982 + 146460962 146461002 41 CTCCTGTGCTGGTTCCAAGACACAGCGAATATAATCCTCAG CTCCTGTGCTGGTTCCAAGACACGGCGAATATAATCCTCAG < 41bp 0.484802419162065 0.718321116474653 0.02152428 0.042832077 prediction 0.436642232949306 Functional Gain - SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146460982 chr4:146460985 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_120476 0 0 1 0 1 SMAD1 chr4:146460956 3'AG 146460956 Downstream 30bp
chr19 39215191 39215191 1 + C T SKCM 39215190 + 39215170 39215210 41 AATGTTGTGGGGCCCTGGATCCAGACCAAGATGGAGGTGAG AATGTTGTGGGGCCCTGGATCTAGACCAAGATGGAGGTGAG < 41bp 0.603181402228646 0.821497929650124 0.7342876 0.68200624 prediction 0.436633054842955 Functional Gain - ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215190 chr19:39215191 stopgain 1.000 1 22 hm5C_associated_SNPs_120478 0 0 1 0 1 ACTN4 chr19:39215205 5'GT 39215205 Upstream 15bp
chr17 16325968 16325968 1 + A G rs8121 16325965 + 16325945 16325985 41 GCTGTGCTGAACCTTAAGGACGGAGTCAATGCCTGCATTCT GCTGTGCTGAACCTTAAGGACGGGGTCAATGCCTGCATTCT < 41bp 0.589200525008409 0.807515541102568 0.8812971 0.9048189 prediction 0.436630032188318 Functional Gain - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16325965 chr17:16325968 synonymous SNV . 0 24 hm5C_associated_SNPs_120479 0 0 0 0 1 TRPV2 chr17:16325913 3'AG 16325913 Downstream 56bp
chr20 39751854 39751854 1 + C T SKCM 39751853 + 39751833 39751873 41 AGGTGCAAGAAGTGGGGTGTCCCAATTGAGAAGATTTACAA AGGTGCAAGAAGTGGGGTGTCTCAATTGAGAAGATTTACAA < 41bp 0.602919842009436 0.82121554898271 0.1809521 0.91961336 prediction 0.436591413946548 Functional Gain - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39751853 chr20:39751854 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_120484 0 0 1 0 1 TOP1 chr20:39751835 3'AG 39751835 Downstream 20bp
chr16 56716420 56716420 1 + T A rs57664183 56716416 + 56716396 56716436 41 CTGTCCCGCTGCGTGTTTTCCTCTTGATCGGGAACTCCTGC CTGTCCCGCTGCGTGTTTTCCTCTAGATCGGGAACTCCTGC < 41bp 0.403035242232387 0.718291808329239 0.09022644 0.88241935 prediction 0.436583616658477 Functional Gain - MT1X ENSG00000259827 ncRNA_exonic Human protein_coding chr16:56716416 chr16:56716420 . . 0 25 hm5C_associated_SNPs_120485 0 0 1 0 1 MT1X chr16:56716480 5'GT 56716480 Upstream 61bp
chr17 53398087 53398087 1 + C T SKCM 53398086 + 53398066 53398106 41 AGCCAAGCGCTCCCGCGACGCCCGGAGGCTGAAAGAGAACC AGCCAAGCGCTCCCGCGACGCTCGGAGGCTGAAAGAGAACC < 41bp 0.46691417012998 0.718288829131165 0.12016773 0.08350679 prediction 0.43657765826233 Functional Gain - HLF ENSG00000108924 CDS Human protein_coding chr17:53398086 chr17:53398087 synonymous SNV . 0 22 hm5C_associated_SNPs_120486 0 0 1 0 1 HLF chr17:53398025 3'AG 53398025 Downstream 63bp
chr17 78968905 78968905 1 + T C COAD 78968903 + 78968883 78968923 41 CAGATCAGCAGCCTGGAGGCCATGGTAGGCGGCCGGGTGCT CAGATCAGCAGCCTGGAGGCCACGGTAGGCGGCCGGGTGCT < 41bp 0.597502741651275 0.815790261894172 0.5342723 0.49981943 prediction 0.436575040485793 Functional Gain - CHMP6 ENSG00000176108 CDS Human protein_coding chr17:78968903 chr17:78968905 nonsynonymous SNV 0.963 2 23 hm5C_associated_SNPs_120488 0 0 1 0 2 CHMP6 chr17:78968819 3'AG 78968819 Downstream 87bp
chr17 78968905 78968905 1 + T C COAD 78968903 + 78968883 78968923 41 CAGATCAGCAGCCTGGAGGCCATGGTAGGCGGCCGGGTGCT CAGATCAGCAGCCTGGAGGCCACGGTAGGCGGCCGGGTGCT < 41bp 0.597502741651275 0.815790261894172 0.5342723 0.49981943 prediction 0.436575040485793 Functional Gain - CHMP6 ENSG00000176108 CDS Human protein_coding chr17:78968903 chr17:78968905 nonsynonymous SNV 0.963 2 23 hm5C_associated_SNPs_120488 0 0 1 0 2 CHMP6 chr17:78968906 5'GT 78968906 Upstream 2bp
chr17 9549441 9549441 1 + C T rs3744756 9549440 + 9549420 9549460 41 CGAATACACGCCCCAACTTTCCGCGGAGTTCAAGGTAGGCA CGAATACACGCCCCAACTTTCTGCGGAGTTCAAGGTAGGCA < 41bp 0.489265509979065 0.718286205769076 0.84097505 0.49404472 prediction 0.436572411538152 Functional Gain - USP43 ENSG00000154914 CDS Human protein_coding chr17:9549440 chr17:9549441 synonymous SNV . 0 22 hm5C_associated_SNPs_120490 0 0 1 0 1 USP43 chr17:9549453 5'GT 9549453 Upstream 13bp
chr20 55904961 55904961 1 + T C rs185741379 55904959 + 55904939 55904979 41 ATGGGGCCCGAGGCCTCGTTCTTCGACGTTTTGGACCGACA ATGGGGCCCGAGGCCTCGTTCTCCGACGTTTTGGACCGACA < 41bp 0.612473603503505 0.830756884040087 0.21039301 0.2936765 prediction 0.436566561073164 Functional Gain - SPO11 ENSG00000054796 CDS Human protein_coding chr20:55904959 chr20:55904961 nonsynonymous SNV 0.963 3 23 hm5C_associated_SNPs_120492 0 0 0 0 1 SPO11 chr20:55905054 5'GT 55905054 Upstream 94bp
chr17 42926663 42926663 1 + C T COAD 42926662 + 42926642 42926682 41 GTAGCAGCATACAGGATTTACCGGCTGAGGTCTCGTGGTTC GTAGCAGCATACAGGATTTACTGGCTGAGGTCTCGTGGTTC < 41bp 0.545268249260832 0.763549010654275 0.43136546 0.20512584 prediction 0.436561522786887 Functional Gain - HIGD1B ENSG00000131097 CDS Human protein_coding chr17:42926662 chr17:42926663 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_120493 0 0 0 0 2 HIGD1B chr17:42926622 3'AG 42926622 Downstream 42bp
chr17 42926663 42926663 1 + C T COAD 42926662 + 42926642 42926682 41 GTAGCAGCATACAGGATTTACCGGCTGAGGTCTCGTGGTTC GTAGCAGCATACAGGATTTACTGGCTGAGGTCTCGTGGTTC < 41bp 0.545268249260832 0.763549010654275 0.43136546 0.20512584 prediction 0.436561522786887 Functional Gain - HIGD1B ENSG00000131097 CDS Human protein_coding chr17:42926662 chr17:42926663 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_120493 0 0 0 0 2 HIGD1B chr17:42926756 5'GT 42926756 Upstream 94bp
chr17 7559097 7559097 1 + C T LUSC 7559096 + 7559076 7559116 41 GTGAAGTTCCTGAATGTGACCCCCAACGTGGAGGTGAATGT GTGAAGTTCCTGAATGTGACCTCCAACGTGGAGGTGAATGT < 41bp 0.450107877259463 0.718267545247106 0.008781463 0.93093956 prediction 0.436535090494212 Functional Gain - ATP1B2 ENSG00000129244 CDS Human protein_coding chr17:7559096 chr17:7559097 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_120497 0 0 1 0 1 ATP1B2 chr17:7559049 3'AG 7559049 Downstream 49bp
chr16 1816059 1816059 1 + C A UCEC 1816058 + 1816038 1816078 41 GGCGTGCTGGCCGGTATCACCCTGGTGGGCTGTGCCACCCG GGCGTGCTGGCCGGTATCACCATGGTGGGCTGTGCCACCCG < 41bp 0.461977172675895 0.718263518845146 0.2233319 0.8737849 prediction 0.436527037690292 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1816058 chr16:1816059 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_120499 0 0 1 0 1 MAPK8IP3 chr16:1815961 3'AG 1815961 Downstream 99bp
chr10 103917969 103917969 1 + C T rs139248308 103917968 + 103917948 103917988 41 AGACTAAAGCCCCTCCCAAACCAGGTACTGTTTCTGTTCCC AGACTAAAGCCCCTCCCAAACTAGGTACTGTTTCTGTTCCC < 41bp 0.566994242560385 0.785256364584892 0.8944986 0.80358076 prediction 0.436524244049015 Functional Gain - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103917968 chr10:103917969 nonsynonymous SNV 0.905 1 22 hm5C_associated_SNPs_120500 0 0 1 0 1 NOLC1 chr10:103917971 5'GT 103917971 Upstream 3bp
chr15 45448080 45448080 1 + C T UCEC 45448079 + 45448059 45448099 41 CACTTCCGCCGCCGCAGTTTCCGGGGCTTCTGGCTGACCCA CACTTCCGCCGCCGCAGTTTCTGGGGCTTCTGGCTGACCCA < 41bp 0.58947691131153 0.807737637273959 0.96285415 0.9463991 prediction 0.436521451924857 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45448079 chr15:45448080 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_120501 0 0 0 0 2 DUOX1 chr15:45448000 3'AG 45448000 Downstream 81bp
chr15 45448080 45448080 1 + C T UCEC 45448079 + 45448059 45448099 41 CACTTCCGCCGCCGCAGTTTCCGGGGCTTCTGGCTGACCCA CACTTCCGCCGCCGCAGTTTCTGGGGCTTCTGGCTGACCCA < 41bp 0.58947691131153 0.807737637273959 0.96285415 0.9463991 prediction 0.436521451924857 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45448079 chr15:45448080 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_120501 0 0 0 0 2 DUOX1 chr15:45448127 5'GT 45448127 Upstream 48bp
chr17 61621448 61621448 1 + T C LUAD 61621446 + 61621426 61621466 41 GGTCCTGGGAGCCAGAACTCCATGGGGGCAGGACCTTGTGC GGTCCTGGGAGCCAGAACTCCACGGGGGCAGGACCTTGTGC < 41bp 0.594080904733509 0.812339019914741 0.86320406 0.9280274 prediction 0.436516230362463 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61621446 chr17:61621448 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_120505 0 0 0 0 1 KCNH6 chr17:61621480 5'GT 61621480 Upstream 33bp
chr19 50040373 50040373 1 + C T SKCM 50040372 + 50040352 50040392 41 CGGCGTTTCCGGGTGGCCGACCAGGATGGGGACTCGATGGC CGGCGTTTCCGGGTGGCCGACTAGGATGGGGACTCGATGGC < 41bp 0.604769503194518 0.823022712443538 0.80546343 0.46653602 prediction 0.43650641849804 Functional Gain - RCN3 ENSG00000142552 CDS Human protein_coding chr19:50040372 chr19:50040373 stopgain 0.992 0 22 hm5C_associated_SNPs_120506 0 0 1 0 2 RCN3 chr19:50040290 3'AG 50040290 Downstream 84bp
chr19 50040373 50040373 1 + C T SKCM 50040372 + 50040352 50040392 41 CGGCGTTTCCGGGTGGCCGACCAGGATGGGGACTCGATGGC CGGCGTTTCCGGGTGGCCGACTAGGATGGGGACTCGATGGC < 41bp 0.604769503194518 0.823022712443538 0.80546343 0.46653602 prediction 0.43650641849804 Functional Gain - RCN3 ENSG00000142552 CDS Human protein_coding chr19:50040372 chr19:50040373 stopgain 0.992 0 22 hm5C_associated_SNPs_120506 0 0 1 0 2 RCN3 chr19:50040462 5'GT 50040462 Upstream 90bp
chr2 64780471 64780471 1 + C G rs569518242 64780467 + 64780447 64780487 41 TACTCCAGGAACCCCCAAAACGCACAGTGTACCTTCAGCAA TACTCCAGGAACCCCCAAAACGCAGAGTGTACCTTCAGCAA < 41bp 0.443302484026639 0.718252452389421 0.12298134 0.4261562 prediction 0.436504904778843 Functional Gain - AFTPH ENSG00000119844 CDS Human protein_coding chr2:64780467 chr2:64780471 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_120507 0 0 0 0 1 AFTPH chr2:64780543 5'GT 64780543 Upstream 73bp
chr1 114523630 114523630 1 + C T SKCM 114523629 + 114523609 114523649 41 ATTCTGAAGCGATTTGGTGGCCCAGCTGGTCTATGGACCAA ATTCTGAAGCGATTTGGTGGCTCAGCTGGTCTATGGACCAA < 41bp 0.476340262612576 0.71824547385473 0.041635603 0.05662945 prediction 0.436490947709461 Functional Gain - OLFML3 ENSG00000116774 CDS Human protein_coding chr1:114523629 chr1:114523630 nonsynonymous SNV 0.733 1 22 hm5C_associated_SNPs_120508 0 0 0 0 1 OLFML3 chr1:114523571 3'AG 114523571 Downstream 60bp
chr5 131607149 131607149 1 + C T SKCM 131607148 + 131607128 131607168 41 CTTGCAGGGCATGCTAGAGGCCGGCGAGGGCGGTAAGACGC CTTGCAGGGCATGCTAGAGGCTGGCGAGGGCGGTAAGACGC < 41bp 0.555216129533869 0.773459216440066 0.37431085 0.3658626 prediction 0.436486173812395 Functional Gain - PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131607148 chr5:131607149 synonymous SNV . 0 22 hm5C_associated_SNPs_120509 0 0 0 0 1 PDLIM4 chr5:131607159 5'GT 131607159 Upstream 11bp
chr6 117050816 117050816 1 + T C HNSC 117050814 + 117050794 117050834 41 TCCAAGTGGCTTTAAATGGACTTGAAAATATTTTACGTCTT TCCAAGTGGCTTTAAATGGACTCGAAAATATTTTACGTCTT < 41bp 0.416615409092243 0.718241939006962 0.027923286 0.22554946 prediction 0.436483878013924 Functional Gain - KPNA5 ENSG00000196911 CDS Human protein_coding chr6:117050814 chr6:117050816 synonymous SNV . 0 23 hm5C_associated_SNPs_120510 0 0 1 0 2 KPNA5 chr6:117050726 3'AG 117050726 Downstream 91bp
chr6 117050816 117050816 1 + T C HNSC 117050814 + 117050794 117050834 41 TCCAAGTGGCTTTAAATGGACTTGAAAATATTTTACGTCTT TCCAAGTGGCTTTAAATGGACTCGAAAATATTTTACGTCTT < 41bp 0.416615409092243 0.718241939006962 0.027923286 0.22554946 prediction 0.436483878013924 Functional Gain - KPNA5 ENSG00000196911 CDS Human protein_coding chr6:117050814 chr6:117050816 synonymous SNV . 0 23 hm5C_associated_SNPs_120510 0 0 1 0 2 KPNA5 chr6:117050904 5'GT 117050904 Upstream 89bp
chr10 89504779 89504779 1 + C T SKCM 89504778 + 89504758 89504798 41 GGTCCAGTGGCACTGCAGGTCCCGGATGATTGCGGGTGCCA GGTCCAGTGGCACTGCAGGTCTCGGATGATTGCGGGTGCCA < 41bp 0.600000772750824 0.818240935929955 0.44850808 0.24131957 prediction 0.436480326358261 Functional Gain - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89504778 chr10:89504779 synonymous SNV . 0 22 hm5C_associated_SNPs_120511 0 0 0 0 1 PAPSS2 chr10:89504759 3'AG 89504759 Downstream 21bp
chr2 219494296 219494296 1 + C A COAD 219494292 + 219494272 219494312 41 GGTGGATGTATGGGATGGACCTAGCGGGGAACCTGTCGTTT GGTGGATGTATGGGATGGACCTAGAGGGGAACCTGTCGTTT < 41bp 0.719305783152392 0.937544108531952 0.09779182 0.13878357 prediction 0.436476650759121 Functional Gain - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219494292 chr2:219494296 nonsynonymous SNV 0.472 1 25 hm5C_associated_SNPs_120512 0 0 1 0 1 PLCD4 chr2:219494242 3'AG 219494242 Downstream 55bp
chr7 195593 195593 1 + C T STAD 195592 + 195572 195612 41 AGGTGCAGAATTCCTCTCCCCCGGGGAGGCGGCCGTGGACT AGGTGCAGAATTCCTCTCCCCTGGGGAGGCGGCCGTGGACT < 41bp 0.568056902006673 0.786293889082137 0.87884533 0.86434793 prediction 0.436473974150928 Functional Gain - FAM20C ENSG00000177706 CDS Human protein_coding chr7:195592 chr7:195593 synonymous SNV . 0 22 hm5C_associated_SNPs_120514 0 0 1 0 1 FAM20C chr7:195554 3'AG 195554 Downstream 40bp
chr19 54696060 54696060 1 + C T rs200626822 54696059 + 54696039 54696079 41 TGGCCACTGCCAGGCCTCGACCGGTCAAGGCCAGGCCCCTG TGGCCACTGCCAGGCCTCGACTGGTCAAGGCCAGGCCCCTG < 41bp 0.582699834168435 0.800936586932914 0.17587751 0.09972748 prediction 0.436473505528958 Functional Gain - TSEN34 ENSG00000170892 CDS Human protein_coding chr19:54696059 chr19:54696060 nonsynonymous SNV 0.975 0 22 hm5C_associated_SNPs_120515 1 0 1 0 1 TSEN34 chr19:54695967 3'AG 54695967 Downstream 94bp
chr20 44751805 44751805 1 + C G BLCA 44751801 + 44751781 44751821 41 TACCATCTGCGAGCCCTGCCCAGTCGGCTTCTTCTCCAATG TACCATCTGCGAGCCCTGCCCAGTGGGCTTCTTCTCCAATG < 41bp 0.410160556600577 0.718225320661627 0.006671667 0.046877295 prediction 0.436450641323254 Functional Gain - CD40 ENSG00000101017 CDS Human protein_coding chr20:44751801 chr20:44751805 synonymous SNV . 0 25 hm5C_associated_SNPs_120518 0 0 1 0 2 CD40 chr20:44751765 3'AG 44751765 Downstream 41bp
chr20 44751805 44751805 1 + C G BLCA 44751801 + 44751781 44751821 41 TACCATCTGCGAGCCCTGCCCAGTCGGCTTCTTCTCCAATG TACCATCTGCGAGCCCTGCCCAGTGGGCTTCTTCTCCAATG < 41bp 0.410160556600577 0.718225320661627 0.006671667 0.046877295 prediction 0.436450641323254 Functional Gain - CD40 ENSG00000101017 CDS Human protein_coding chr20:44751801 chr20:44751805 synonymous SNV . 0 25 hm5C_associated_SNPs_120518 0 0 1 0 2 CD40 chr20:44751858 5'GT 44751858 Upstream 54bp
chr2 219294332 219294332 1 + C T SKCM 219294331 + 219294311 219294351 41 GTCCTGCAGTGTGTCTGACTCCGAGGGGAATCTGGTGGTGA GTCCTGCAGTGTGTCTGACTCTGAGGGGAATCTGGTGGTGA < 41bp 0.561041277826506 0.779264650505874 0.7332795 0.42743358 prediction 0.436446745358734 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219294331 chr2:219294332 synonymous SNV . 0 22 hm5C_associated_SNPs_120519 0 0 0 0 1 VIL1 chr2:219294398 5'GT 219294398 Upstream 67bp
chr6 152419965 152419965 1 + C A LUAD 152419961 + 152419941 152419981 41 TGCTGGACGCCCACCGCCTACATGCGCCCACTAGCCGTGGA TGCTGGACGCCCACCGCCTACATGAGCCCACTAGCCGTGGA < 41bp 0.377712130552482 0.718212555328649 0.1323241 0.12477416 prediction 0.436425110657298 Functional Gain - ESR1 ENSG00000091831 CDS Human protein_coding chr6:152419961 chr6:152419965 nonsynonymous SNV 0.011 2 25 hm5C_associated_SNPs_120522 0 0 0 0 1 ESR1 chr6:152419867 3'AG 152419867 Downstream 99bp
chr8 145662151 145662151 1 - G A UCEC 145662152 - 145662132 145662172 41 CGGGGGGCGTCCGTCACCCTCCGCACTCGAAAGGTGAGCCT CGGGGGGCGTCCGTCACCCTCTGCACTCGAAAGGTGAGCCT < 41bp 0.471253705962288 0.718211478765692 0.08020881 0.1817236 prediction 0.436422957531384 Functional Gain - TONSL ENSG00000160949 CDS Human protein_coding chr8:145662152 chr8:145662151 nonsynonymous SNV 0.860 3 22 hm5C_associated_SNPs_120523 0 0 1 0 1 TONSL chr8:145662140 5'GT 145662140 Upstream 12bp
chr19 45150522 45150522 1 + A G rs200120420 45150519 + 45150499 45150539 41 CGTCGTCGTGCAGGCGCCCACCCAGGTGCCCGGCTTCTTGG CGTCGTCGTGCAGGCGCCCACCCGGGTGCCCGGCTTCTTGG < 41bp 0.599873588925381 0.818074321619366 0.38280442 0.8714341 prediction 0.436401465387969 Functional Gain - PVR ENSG00000073008 CDS Human protein_coding chr19:45150519 chr19:45150522 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_120524 0 0 1 0 1 PVR chr19:45150495 3'AG 45150495 Downstream 28bp
chr10 12162849 12162849 1 + C A rs140386798 12162845 + 12162825 12162865 41 GTAGGAATTGGCACAGTTCACTTGCACCAGCATGAAGATAT GTAGGAATTGGCACAGTTCACTTGAACCAGCATGAAGATAT < 41bp 0.312165663466324 0.718192110316195 0.07970011 0.1160889 prediction 0.436384220632391 Functional Gain - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12162845 chr10:12162849 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_120528 0 0 1 0 1 DHTKD1 chr10:12162786 3'AG 12162786 Downstream 64bp
chr22 29835133 29835133 1 + C A LUSC 29835132 + 29835112 29835152 41 AGAAGATTCTGCAGATGAACCCAAGGATGCGGAAGTTCCAA AGAAGATTCTGCAGATGAACCAAAGGATGCGGAAGTTCCAA < 41bp 0.451434724992013 0.71819206066515 0.2263262 0.29342583 prediction 0.4363841213303 Functional Gain - RFPL1 ENSG00000128250 CDS Human protein_coding chr22:29835132 chr22:29835133 nonsynonymous SNV 0.673 2 22 hm5C_associated_SNPs_120529 0 0 0 0 1 RFPL1 chr22:29835153 5'GT 29835153 Upstream 21bp
chr7 143086960 143086960 1 + C T SKCM 143086959 + 143086939 143086979 41 GCCCCTTCCAGGCAGTACGCCCCGAGGTGCTCCGTCTGCTC GCCCCTTCCAGGCAGTACGCCTCGAGGTGCTCCGTCTGCTC < 41bp 0.619677395524742 0.837858108918313 0.18220022 0.84311163 prediction 0.436361426787143 Functional Gain - ZYX ENSG00000159840 CDS Human protein_coding chr7:143086959 chr7:143086960 nonsynonymous SNV 0.939 3 22 hm5C_associated_SNPs_120536 0 0 1 0 1 ZYX chr7:143086950 3'AG 143086950 Downstream 11bp
chr11 1459557 1459557 1 + C T COAD 1459556 + 1459536 1459576 41 GTGGAGCGGGAGATCGCGATCCTGAAGCTCATTGAGCACCC GTGGAGCGGGAGATCGCGATCTTGAAGCTCATTGAGCACCC < 41bp 0.581878168171532 0.800058397778742 0.42261675 0.58293045 prediction 0.43636045921442 Functional Gain - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1459556 chr11:1459557 synonymous SNV . 0 22 hm5C_associated_SNPs_120537 0 0 1 0 1 BRSK2 chr11:1459621 5'GT 1459621 Upstream 65bp
chr16 67208993 67208993 1 + C G rs201000974 67208989 + 67208969 67209009 41 CTGACAGGCGGTGCCCCGCCCATGCTGGATAGGACCTGGGA CTGACAGGCGGTGCCCCGCCCATGGTGGATAGGACCTGGGA < 41bp 0.421532976751598 0.718174753930709 0.09226197 0.33062547 prediction 0.436349507861419 Functional Gain - NOL3 ENSG00000140939 CDS Human protein_coding chr16:67208989 chr16:67208993 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_120539 0 0 1 1 1 NOL3 chr16:67208950 3'AG 67208950 Downstream 44bp
chrX 35970049 35970049 1 + A G LUSC 35970046 + 35970026 35970066 41 AAGGGACTTTACAACCTTATCAAAAGACTGTAATTACATTT AAGGGACTTTACAACCTTATCAAGAGACTGTAATTACATTT < 41bp 0.523579101907106 0.741744825089914 0.17518958 0.32774055 prediction 0.436331446365616 Functional Gain - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35970046 chrX:35970049 nonsynonymous SNV 0.907 3 24 hm5C_associated_SNPs_120542 0 0 0 0 1 CFAP47 chrX:35970080 5'GT 35970080 Upstream 32bp
chr7 142479980 142479980 1 + C A PRAD 142479976 + 142479956 142479996 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAATTC TGTGAGGAGAATTCTGTCCCCTACAAGGTGTCCTTGAATTC < 41bp 0.302333168377814 0.718157850918151 0.01603669 0.45473793 prediction 0.436315701836302 Functional Gain - PRSS3P2 ENSG00000250606 ncRNA_exonic Human other chr7:142479976 chr7:142479980 . . 0 25 hm5C_associated_SNPs_120544 0 0 0 0 1 PRSS3P2 chr7:142480068 5'GT 142480068 Upstream 89bp
chr5 52097257 52097257 1 + C T LGG 52097256 + 52097236 52097276 41 ATTCTAGGTACATGCCTCCTCCGGACACAAGTACTCCCTGA ATTCTAGGTACATGCCTCCTCTGGACACAAGTACTCCCTGA < 41bp 0.548161697690765 0.766315617988503 0.2371693 0.13028628 prediction 0.436307840595476 Functional Gain - PELO ENSG00000152684 CDS Human protein_coding chr5:52097256 chr5:52097257 synonymous SNV . 0 22 hm5C_associated_SNPs_120547 0 0 0 0 1 PELO chr5:52097243 3'AG 52097243 Downstream 15bp
chr18 60017105 60017105 1 + C T GBM 60017104 + 60017084 60017124 41 GTGTATGTCTGCCCTGTGGCCCGGATGAATACTTGGATAGC GTGTATGTCTGCCCTGTGGCCTGGATGAATACTTGGATAGC < 41bp 0.594819292873016 0.812970429018111 0.64663506 0.44010305 prediction 0.436302272290192 Functional Gain - TNFRSF11A ENSG00000141655 CDS Human protein_coding chr18:60017104 chr18:60017105 nonsynonymous SNV 0.201 0 22 hm5C_associated_SNPs_120551 0 0 1 0 2 TNFRSF11A chr18:60017045 3'AG 60017045 Downstream 61bp
chr18 60017105 60017105 1 + C T GBM 60017104 + 60017084 60017124 41 GTGTATGTCTGCCCTGTGGCCCGGATGAATACTTGGATAGC GTGTATGTCTGCCCTGTGGCCTGGATGAATACTTGGATAGC < 41bp 0.594819292873016 0.812970429018111 0.64663506 0.44010305 prediction 0.436302272290192 Functional Gain - TNFRSF11A ENSG00000141655 CDS Human protein_coding chr18:60017104 chr18:60017105 nonsynonymous SNV 0.201 0 22 hm5C_associated_SNPs_120551 0 0 1 0 2 TNFRSF11A chr18:60017170 5'GT 60017170 Upstream 66bp
chr5 52285306 52285306 1 + C A UCEC 52285305 + 52285285 52285325 41 CGGTCAGACCCAGGATGGGGCCAGAACGGACAGGGGCCGCG CGGTCAGACCCAGGATGGGGCAAGAACGGACAGGGGCCGCG < 41bp 0.576306595002419 0.794457597096863 0.29486603 0.39280617 prediction 0.436302004188887 Functional Gain - ITGA2 ENSG00000164171 CDS Human protein_coding chr5:52285305 chr5:52285306 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_120552 0 0 1 0 1 ITGA2 chr5:52285362 5'GT 52285362 Upstream 57bp
chr3 184295219 184295219 1 + A G LIHC 184295216 + 184295196 184295236 41 GCACCCCCAGAGCGGCCCAACGGAGTCATCCTGGACTACGA GCACCCCCAGAGCGGCCCAACGGGGTCATCCTGGACTACGA < 41bp 0.586019809616654 0.804163900342847 0.7586154 0.9252207 prediction 0.436288181452386 Functional Gain - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184295216 chr3:184295219 synonymous SNV . 0 24 hm5C_associated_SNPs_120555 0 0 0 0 2 EPHB3 chr3:184295131 3'AG 184295131 Downstream 89bp
chr3 184295219 184295219 1 + A G LIHC 184295216 + 184295196 184295236 41 GCACCCCCAGAGCGGCCCAACGGAGTCATCCTGGACTACGA GCACCCCCAGAGCGGCCCAACGGGGTCATCCTGGACTACGA < 41bp 0.586019809616654 0.804163900342847 0.7586154 0.9252207 prediction 0.436288181452386 Functional Gain - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184295216 chr3:184295219 synonymous SNV . 0 24 hm5C_associated_SNPs_120555 0 0 0 0 2 EPHB3 chr3:184295255 5'GT 184295255 Upstream 37bp
chr7 141408896 141408896 1 + C T SKCM 141408895 + 141408875 141408915 41 CCAGTGACAGCCCCTCTACTCCCAAAGTAAGTAAGGGGTGG CCAGTGACAGCCCCTCTACTCTCAAAGTAAGTAAGGGGTGG < 41bp 0.557145407390399 0.775286559564852 0.21232027 0.62844473 prediction 0.436282304348906 Functional Gain - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141408895 chr7:141408896 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_120556 0 0 0 0 1 WEE2 chr7:141408900 5'GT 141408900 Upstream 5bp
chr20 61588159 61588159 1 + A G rs2245341 61588156 + 61588136 61588176 41 ACGGGGACGCTGCTGCTGGGCACATGCCTTCTGTACTGCGC ACGGGGACGCTGCTGCTGGGCACGTGCCTTCTGTACTGCGC < 41bp 0.474514763052204 0.718137824746656 0.19817966 0.33310735 prediction 0.436275649493313 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61588156 chr20:61588159 synonymous SNV . 0 24 hm5C_associated_SNPs_120558 0 0 0 0 1 SLC17A9 chr20:61588117 3'AG 61588117 Downstream 43bp
chr16 5053420 5053420 1 + T A SKCM 5053416 + 5053396 5053436 41 GCCACAGCTCCTGGACCTGCCTGCTAGACCTGGAGGGACTC GCCACAGCTCCTGGACCTGCCTGCAAGACCTGGAGGGACTC < 41bp 0.369047436469331 0.718134770477605 0.06098464 0.18769315 prediction 0.43626954095521 Functional Gain - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5053416 chr16:5053420 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_120560 0 0 0 0 1 SEC14L5 chr16:5053403 3'AG 5053403 Downstream 18bp
chr3 36534678 36534678 1 + T C LIHC 36534675 + 36534655 36534695 41 GTGGAGGTTCCTGAGGAAGCCAATGGGCCAGGAGGCGGGTA GTGGAGGTTCCTGAGGAAGCCAACGGGCCAGGAGGCGGGTA < 41bp 0.507152726563754 0.725285398787656 0.42638403 0.41455185 prediction 0.436265344447806 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36534675 chr3:36534678 synonymous SNV . 0 24 hm5C_associated_SNPs_120562 0 0 0 0 2 STAC chr3:36534643 3'AG 36534643 Downstream 36bp
chr3 36534678 36534678 1 + T C LIHC 36534675 + 36534655 36534695 41 GTGGAGGTTCCTGAGGAAGCCAATGGGCCAGGAGGCGGGTA GTGGAGGTTCCTGAGGAAGCCAACGGGCCAGGAGGCGGGTA < 41bp 0.507152726563754 0.725285398787656 0.42638403 0.41455185 prediction 0.436265344447806 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36534675 chr3:36534678 synonymous SNV . 0 24 hm5C_associated_SNPs_120562 0 0 0 0 2 STAC chr3:36534721 5'GT 36534721 Upstream 44bp
chr20 30617620 30617620 1 + C T PRAD 30617619 + 30617599 30617639 41 CTGCTGAAGCTCTACGGAGACCGGCGCAAGTTCCTCCTCCT CTGCTGAAGCTCTACGGAGACTGGCGCAAGTTCCTCCTCCT < 41bp 0.486904706648931 0.718131544369843 0.7351075 0.70608425 prediction 0.436263088739686 Functional Gain - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30617619 chr20:30617620 nonsynonymous SNV 0.977 2 22 hm5C_associated_SNPs_120565 0 0 0 0 1 CCM2L chr20:30617641 5'GT 30617641 Upstream 22bp
chr21 30411367 30411367 1 + T G rs78056639 30411365 + 30411345 30411385 41 AGGAACCATTAGAAATAAACCTTGAGCCTCCAGGCCCTCTT AGGAACCATTAGAAATAAACCTGGAGCCTCCAGGCCCTCTT < 41bp 0.66961507488086 0.88774422464103 0.00825423 0.13755554 prediction 0.43625829952034 Functional Gain - USP16 ENSG00000156256 CDS Human protein_coding chr21:30411365 chr21:30411367 synonymous SNV . 0 23 hm5C_associated_SNPs_120566 0 0 1 0 2 USP16 chr21:30411347 3'AG 30411347 Downstream 21bp
chr21 30411367 30411367 1 + T G rs78056639 30411365 + 30411345 30411385 41 AGGAACCATTAGAAATAAACCTTGAGCCTCCAGGCCCTCTT AGGAACCATTAGAAATAAACCTGGAGCCTCCAGGCCCTCTT < 41bp 0.66961507488086 0.88774422464103 0.00825423 0.13755554 prediction 0.43625829952034 Functional Gain - USP16 ENSG00000156256 CDS Human protein_coding chr21:30411365 chr21:30411367 synonymous SNV . 0 23 hm5C_associated_SNPs_120566 0 0 1 0 2 USP16 chr21:30411466 5'GT 30411466 Upstream 100bp
chr8 10555470 10555470 1 + C A LUAD 10555466 + 10555446 10555486 41 GGAGAACTCGCTGCAGAAGGCGTTCGCTGCCGCCGCGCCTG GGAGAACTCGCTGCAGAAGGCGTTAGCTGCCGCCGCGCCTG < 41bp 0.324000215643792 0.718125466527354 0.50272995 0.833707 prediction 0.436250933054708 Functional Gain - C8orf74 ENSG00000171060 CDS Human protein_coding chr8:10555466 chr8:10555470 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_120569 0 0 0 0 1 C8orf74 chr8:10555515 5'GT 10555515 Upstream 46bp
chr20 3783576 3783576 1 + T C COAD 3783573 + 3783553 3783593 41 TCAGGCCTTCCTCCTACAGACAGTAGACGGAAAGCACCAAG TCAGGCCTTCCTCCTACAGACAGCAGACGGAAAGCACCAAG < 41bp 0.524352214073701 0.742471580365526 0.09810236 0.12830985 prediction 0.436238732583649 Functional Gain - CDC25B ENSG00000101224 CDS Human protein_coding chr20:3783573 chr20:3783576 nonsynonymous SNV 0.952 3 24 hm5C_associated_SNPs_120571 0 0 1 0 2 CDC25B chr20:3783557 3'AG 3783557 Downstream 20bp
chr20 3783576 3783576 1 + T C COAD 3783573 + 3783553 3783593 41 TCAGGCCTTCCTCCTACAGACAGTAGACGGAAAGCACCAAG TCAGGCCTTCCTCCTACAGACAGCAGACGGAAAGCACCAAG < 41bp 0.524352214073701 0.742471580365526 0.09810236 0.12830985 prediction 0.436238732583649 Functional Gain - CDC25B ENSG00000101224 CDS Human protein_coding chr20:3783573 chr20:3783576 nonsynonymous SNV 0.952 3 24 hm5C_associated_SNPs_120571 0 0 1 0 2 CDC25B chr20:3783619 5'GT 3783619 Upstream 44bp
chr19 11113800 11113800 1 + C T rs548456029 11113799 + 11113779 11113819 41 AGGCACAGATGCCCCCAAAGCCGGGCAGCTGGAGGCCTGGC AGGCACAGATGCCCCCAAAGCTGGGCAGCTGGAGGCCTGGC < 41bp 0.560520464672766 0.778639757997811 0.8630029 0.5131945 prediction 0.436238586650088 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11113799 chr19:11113800 synonymous SNV . 0 22 hm5C_associated_SNPs_120572 0 0 1 0 2 SMARCA4 chr19:11113705 3'AG 11113705 Downstream 96bp
chr19 11113800 11113800 1 + C T rs548456029 11113799 + 11113779 11113819 41 AGGCACAGATGCCCCCAAAGCCGGGCAGCTGGAGGCCTGGC AGGCACAGATGCCCCCAAAGCTGGGCAGCTGGAGGCCTGGC < 41bp 0.560520464672766 0.778639757997811 0.8630029 0.5131945 prediction 0.436238586650088 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11113799 chr19:11113800 synonymous SNV . 0 22 hm5C_associated_SNPs_120572 0 0 1 0 2 SMARCA4 chr19:11113835 5'GT 11113835 Upstream 36bp
chr10 50916418 50916418 1 + C A LUSC 50916414 + 50916394 50916434 41 TCTTTGTTCTCAGGCAAGCTCACCCCAAGTAGTGACAAGAG TCTTTGTTCTCAGGCAAGCTCACCACAAGTAGTGACAAGAG < 41bp 0.312782930478759 0.718116990355038 0.1164552 0.06084627 prediction 0.436233980710075 Functional Gain - C10orf53 ENSG00000178645 CDS Human protein_coding chr10:50916414 chr10:50916418 nonsynonymous SNV 0.051 1 25 hm5C_associated_SNPs_120574 0 0 0 0 1 C10orf53 chr10:50916407 3'AG 50916407 Downstream 12bp
chr1 156628909 156628909 1 + C A rs146836375 156628905 + 156628885 156628925 41 GCGCTGTTGATCCCCCCTTCCAGCCCCATGCCAGGTCCCTA GCGCTGTTGATCCCCCCTTCCAGCACCATGCCAGGTCCCTA < 41bp 0.322086910441514 0.718111908647875 0.18644682 0.3388415 prediction 0.43622381729575 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156628905 chr1:156628909 nonsynonymous SNV 0.009 1 25 hm5C_associated_SNPs_120575 0 0 0 0 1 BCAN chr1:156628819 3'AG 156628819 Downstream 91bp
chr19 10200710 10200710 1 + C T SKCM 10200709 + 10200689 10200729 41 ACGTCTGGTGGCGCCGCGTGCCCCAGCGGAAGGAGGTGATG ACGTCTGGTGGCGCCGCGTGCTCCAGCGGAAGGAGGTGATG < 41bp 0.620174636968736 0.838286421709138 0.14727578 0.54708225 prediction 0.436223569480804 Functional Gain - C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10200709 chr19:10200710 nonsynonymous SNV 0.960 4 22 hm5C_associated_SNPs_120576 0 0 1 0 1 C19orf66 chr19:10200723 5'GT 10200723 Upstream 14bp
chr17 48761062 48761062 1 + C G rs41280128 48761058 + 48761038 48761078 41 GGAATTATTCTGTGCGCTACCGGCCGGGCCTAGACCTGGTG GGAATTATTCTGTGCGCTACCGGCGGGGCCTAGACCTGGTG < 41bp 0.420426774011336 0.718104624636034 0.66780424 0.90551317 prediction 0.436209249272068 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48761058 chr17:48761062 nonsynonymous SNV 0.792 2 25 hm5C_associated_SNPs_120579 0 0 1 0 2 ABCC3 chr17:48760971 3'AG 48760971 Downstream 92bp
chr17 48761062 48761062 1 + C G rs41280128 48761058 + 48761038 48761078 41 GGAATTATTCTGTGCGCTACCGGCCGGGCCTAGACCTGGTG GGAATTATTCTGTGCGCTACCGGCGGGGCCTAGACCTGGTG < 41bp 0.420426774011336 0.718104624636034 0.66780424 0.90551317 prediction 0.436209249272068 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48761058 chr17:48761062 nonsynonymous SNV 0.792 2 25 hm5C_associated_SNPs_120579 0 0 1 0 2 ABCC3 chr17:48761117 5'GT 48761117 Upstream 56bp
chr19 50881460 50881460 1 + C T SKCM 50881459 + 50881439 50881479 41 AGCGAAAGAAGGGCCCAGCCCCGAAGATGCTGGGCCACGAG AGCGAAAGAAGGGCCCAGCCCTGAAGATGCTGGGCCACGAG < 41bp 0.583055560194401 0.801159909204216 0.5842329 0.570526 prediction 0.436208698019631 Functional Gain - NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50881459 chr19:50881460 nonsynonymous SNV 0.192 3 22 hm5C_associated_SNPs_120580 0 0 1 0 1 NR1H2 chr19:50881406 3'AG 50881406 Downstream 55bp
chr2 175268890 175268890 1 + C A rs368601014 175268889 + 175268869 175268909 41 ACCAAGATTGCCCGGGAACACCCAGACATGAGAAACTATGC ACCAAGATTGCCCGGGAACACACAGACATGAGAAACTATGC < 41bp 0.459443408003727 0.718101918589995 0.09348342 0.05375266 prediction 0.436203837179991 Functional Gain - SCRN3 ENSG00000144306 CDS Human protein_coding chr2:175268889 chr2:175268890 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_120581 0 0 0 0 1 SCRN3 chr2:175268831 3'AG 175268831 Downstream 60bp
chr12 132401997 132401997 1 + C G rs569526446 132401996 + 132401976 132402016 41 GGGAGCCTGCACCCAGGAGCCCGTGCTGGGGGCACCAGCAG GGGAGCCTGCACCCAGGAGCCGGTGCTGGGGGCACCAGCAG < 41bp 0.403994213823034 0.718101518695296 0.37799475 0.8746216 prediction 0.436203037390592 Functional Gain - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132401996 chr12:132401997 nonsynonymous SNV 0.678 1 22 hm5C_associated_SNPs_120582 0 0 1 0 1 ULK1 chr12:132401956 3'AG 132401956 Downstream 42bp
chr17 16285426 16285426 1 + C T UCEC 16285425 + 16285405 16285445 41 CAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGAGG CAGAAGGAGTCGACCCTGCACTTGGTCCTGCGTCTGAGAGG < 41bp 0.48586339179149 0.718097304857669 0.18530792 0.14944586 prediction 0.436194609715338 Functional Gain - UBB ENSG00000170315 CDS Human protein_coding chr17:16285425 chr17:16285426 synonymous SNV . 0 22 hm5C_associated_SNPs_120584 0 0 1 0 1 UBB chr17:16285444 5'GT 16285444 Upstream 19bp
chr7 133833006 133833006 1 + C T LUSC 133833005 + 133832985 133833025 41 TGCCAGAAGGCGGATTTTTCCCACAACCAAATTTCTGAAAT TGCCAGAAGGCGGATTTTTCCTACAACCAAATTTCTGAAAT < 41bp 0.462244055931762 0.718096238480009 0.03570631 0.44595546 prediction 0.436192476960019 Functional Gain - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133833005 chr7:133833006 nonsynonymous SNV 0.841 0 22 hm5C_associated_SNPs_120585 0 0 0 0 2 LRGUK chr7:133832991 3'AG 133832991 Downstream 16bp
chr7 133833006 133833006 1 + C T LUSC 133833005 + 133832985 133833025 41 TGCCAGAAGGCGGATTTTTCCCACAACCAAATTTCTGAAAT TGCCAGAAGGCGGATTTTTCCTACAACCAAATTTCTGAAAT < 41bp 0.462244055931762 0.718096238480009 0.03570631 0.44595546 prediction 0.436192476960019 Functional Gain - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133833005 chr7:133833006 nonsynonymous SNV 0.841 0 22 hm5C_associated_SNPs_120585 0 0 0 0 2 LRGUK chr7:133833072 5'GT 133833072 Upstream 67bp
chr11 66283032 66283032 1 + C T SKCM 66283031 + 66283011 66283051 41 GACCGAATCGACCCCTTAACCCTGAAGGAGATGCTGGAGAG GACCGAATCGACCCCTTAACCTTGAAGGAGATGCTGGAGAG < 41bp 0.61043585419728 0.828529041236001 0.14531279 0.18475986 prediction 0.436186374077442 Functional Gain - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66283031 chr11:66283032 synonymous SNV . 0 22 hm5C_associated_SNPs_120586 0 0 1 0 2 BBS1 chr11:66283011 3'AG 66283011 Downstream 22bp
chr11 66283032 66283032 1 + C T SKCM 66283031 + 66283011 66283051 41 GACCGAATCGACCCCTTAACCCTGAAGGAGATGCTGGAGAG GACCGAATCGACCCCTTAACCTTGAAGGAGATGCTGGAGAG < 41bp 0.61043585419728 0.828529041236001 0.14531279 0.18475986 prediction 0.436186374077442 Functional Gain - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66283031 chr11:66283032 synonymous SNV . 0 22 hm5C_associated_SNPs_120586 0 0 1 0 2 BBS1 chr11:66283057 5'GT 66283057 Upstream 26bp
chr1 26885302 26885302 1 + C T rs143984856 26885301 + 26885281 26885321 41 TCCTTCCATCCGTACAGATTCCCCAGGCATCCCCCCCAGCG TCCTTCCATCCGTACAGATTCTCCAGGCATCCCCCCCAGCG < 41bp 0.625202033642569 0.8432889465577 0.11833659 0.9443694 prediction 0.436173825830262 Functional Gain - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26885301 chr1:26885302 synonymous SNV . 0 22 hm5C_associated_SNPs_120587 0 0 1 0 1 RPS6KA1 chr1:26885298 3'AG 26885298 Downstream 5bp
chr7 87005241 87005241 1 + C G rs144536594 87005240 + 87005220 87005260 41 ATTCCATGGAGGATAGCAGTCCACATGTAACACCAGAGGAT ATTCCATGGAGGATAGCAGTCGACATGTAACACCAGAGGAT < 41bp 0.409091951166388 0.718086447592362 0.14475682 0.21057656 prediction 0.436172895184725 Functional Gain - CROT ENSG00000005469 CDS Human protein_coding chr7:87005240 chr7:87005241 nonsynonymous SNV 0.993 5 22 hm5C_associated_SNPs_120588 0 0 0 0 2 CROT chr7:87005144 3'AG 87005144 Downstream 98bp
chr7 87005241 87005241 1 + C G rs144536594 87005240 + 87005220 87005260 41 ATTCCATGGAGGATAGCAGTCCACATGTAACACCAGAGGAT ATTCCATGGAGGATAGCAGTCGACATGTAACACCAGAGGAT < 41bp 0.409091951166388 0.718086447592362 0.14475682 0.21057656 prediction 0.436172895184725 Functional Gain - CROT ENSG00000005469 CDS Human protein_coding chr7:87005240 chr7:87005241 nonsynonymous SNV 0.993 5 22 hm5C_associated_SNPs_120588 0 0 0 0 2 CROT chr7:87005269 5'GT 87005269 Upstream 29bp
chr17 18051447 18051447 1 + C A rs121908970 18051443 + 18051423 18051463 41 AGCAGGGCTCGGGGGCTGCCCGCACCTTACCCCCGACCCAG AGCAGGGCTCGGGGGCTGCCCGCAACTTACCCCCGACCCAG < 41bp 0.353195085860125 0.718084393997581 0.3750623 0.39639592 prediction 0.436168787995163 Functional Gain - MYO15A ENSG00000091536 CDS Human protein_coding chr17:18051443 chr17:18051447 nonsynonymous SNV 0.901 1 25 hm5C_associated_SNPs_120591 0 0 0 0 1 MYO15A chr17:18051524 5'GT 18051524 Upstream 78bp
chr11 134132696 134132696 1 + C T rs145165576 134132695 + 134132675 134132715 41 CAGGGGCCTGGAGTCCAGAGCCGCAGCTTCGTCCCTTTCGG CAGGGGCCTGGAGTCCAGAGCTGCAGCTTCGTCCCTTTCGG < 41bp 0.512073596576569 0.730155187673795 0.69468665 0.5519295 prediction 0.436163182194451 Functional Gain - ACAD8 ENSG00000151498 CDS Human protein_coding chr11:134132695 chr11:134132696 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_120592 0 0 1 0 1 ACAD8 chr11:134132664 3'AG 134132664 Downstream 33bp
chr18 47901537 47901537 1 + T A rs140808298 47901533 + 47901513 47901553 41 CGCAGCTGGAGACCCAGCGGCGAGTAGCCTTTTGCTCCCGG CGCAGCTGGAGACCCAGCGGCGAGAAGCCTTTTGCTCCCGG < 41bp 0.577273278371824 0.795345033500973 0.28738856 0.64166254 prediction 0.436143510258298 Functional Gain - SKA1 ENSG00000154839 UTR5 Human protein_coding chr18:47901533 chr18:47901537 . . 0 25 hm5C_associated_SNPs_120595 0 0 1 0 2 SKA1 chr18:47901564 5'GT 47901564 Upstream 28bp
chr18 47901537 47901537 1 + T A rs140808298 47901533 + 47901513 47901553 41 CGCAGCTGGAGACCCAGCGGCGAGTAGCCTTTTGCTCCCGG CGCAGCTGGAGACCCAGCGGCGAGAAGCCTTTTGCTCCCGG < 41bp 0.577273278371824 0.795345033500973 0.28738856 0.64166254 prediction 0.436143510258298 Functional Gain - SKA1 ENSG00000154839 UTR5 Human protein_coding chr18:47901533 chr18:47901537 . . 0 25 hm5C_associated_SNPs_120595 0 0 1 0 2 SKA1 chr18:47901609 5'GT 47901609 Upstream 73bp
chr2 3425682 3425682 1 + C A LUSC 3425681 + 3425661 3425701 41 AACTGGAGGGCAGCAGTGGACCTGTGCGGACGTCTCCTCAC AACTGGAGGGCAGCAGTGGACATGTGCGGACGTCTCCTCAC < 41bp 0.449054232964141 0.718071433126291 0.080411136 0.3965787 prediction 0.436142866252582 Functional Gain - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3425681 chr2:3425682 nonsynonymous SNV 0.745 3 22 hm5C_associated_SNPs_120596 0 0 1 0 2 TRAPPC12 chr2:3425652 3'AG 3425652 Downstream 31bp
chr2 3425682 3425682 1 + C A LUSC 3425681 + 3425661 3425701 41 AACTGGAGGGCAGCAGTGGACCTGTGCGGACGTCTCCTCAC AACTGGAGGGCAGCAGTGGACATGTGCGGACGTCTCCTCAC < 41bp 0.449054232964141 0.718071433126291 0.080411136 0.3965787 prediction 0.436142866252582 Functional Gain - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3425681 chr2:3425682 nonsynonymous SNV 0.745 3 22 hm5C_associated_SNPs_120596 0 0 1 0 2 TRAPPC12 chr2:3425765 5'GT 3425765 Upstream 84bp
chr1 182827872 182827872 1 + A G BLCA 182827869 + 182827849 182827889 41 TTTTCTTATTTTTTAATAGCCTGAAGATCCTTCTGTGCCAG TTTTCTTATTTTTTAATAGCCTGGAGATCCTTCTGTGCCAG < 41bp 0.530238824041075 0.748308192446317 0.18079162 0.4038347 prediction 0.436138736810484 Functional Gain - DHX9 ENSG00000135829 CDS Human protein_coding chr1:182827869 chr1:182827872 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_120598 0 0 1 0 1 DHX9 chr1:182827868 3'AG 182827868 Downstream 5bp
chr8 70517160 70517160 1 + C T UCEC 70517159 + 70517139 70517179 41 ACCAGACAGCCTGTGAACAACCGGGGCAGGTGAGTGACGCA ACCAGACAGCCTGTGAACAACTGGGGCAGGTGAGTGACGCA < 41bp 0.58757194445844 0.805628968892142 0.8516873 0.72270846 prediction 0.436114048867404 Functional Gain - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70517159 chr8:70517160 nonsynonymous SNV 0.898 2 22 hm5C_associated_SNPs_120604 0 0 0 4 1 SULF1 chr8:70517167 5'GT 70517167 Upstream 8bp
chr20 39690105 39690105 1 + C T STAD 39690104 + 39690084 39690124 41 GAACACAAGAAGGAGAAGGACCGGGAAAAGTCCAAGCATAG GAACACAAGAAGGAGAAGGACTGGGAAAAGTCCAAGCATAG < 41bp 0.479582233504213 0.71805113656114 0.41580263 0.19180122 prediction 0.436102273122281 Functional Gain - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39690104 chr20:39690105 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_120608 0 0 1 0 2 TOP1 chr20:39690034 3'AG 39690034 Downstream 72bp
chr20 39690105 39690105 1 + C T STAD 39690104 + 39690084 39690124 41 GAACACAAGAAGGAGAAGGACCGGGAAAAGTCCAAGCATAG GAACACAAGAAGGAGAAGGACTGGGAAAAGTCCAAGCATAG < 41bp 0.479582233504213 0.71805113656114 0.41580263 0.19180122 prediction 0.436102273122281 Functional Gain - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39690104 chr20:39690105 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_120608 0 0 1 0 2 TOP1 chr20:39690130 5'GT 39690130 Upstream 26bp
chr1 156845892 156845892 1 + C T BLCA 156845891 + 156845871 156845911 41 GGTGTTCACCACATCAAGCGCCGGGACATCGTGCTCAAGTG GGTGTTCACCACATCAAGCGCTGGGACATCGTGCTCAAGTG < 41bp 0.560760719231749 0.778809081902504 0.55869657 0.21897823 prediction 0.436096725341509 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845891 chr1:156845892 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_120610 0 0 0 0 2 NTRK1 chr1:156845863 3'AG 156845863 Downstream 30bp
chr1 156845892 156845892 1 + C T BLCA 156845891 + 156845871 156845911 41 GGTGTTCACCACATCAAGCGCCGGGACATCGTGCTCAAGTG GGTGTTCACCACATCAAGCGCTGGGACATCGTGCTCAAGTG < 41bp 0.560760719231749 0.778809081902504 0.55869657 0.21897823 prediction 0.436096725341509 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845891 chr1:156845892 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_120610 0 0 0 0 2 NTRK1 chr1:156845872 3'AG 156845872 Downstream 21bp
chr2 192261212 192261212 1 + C T PRAD 192261211 + 192261191 192261231 41 TTAGTAATTCAGTCTTATATCCGGGGTTGGAAGGTGAGTTT TTAGTAATTCAGTCTTATATCTGGGGTTGGAAGGTGAGTTT < 41bp 0.555702512220745 0.773736393984251 0.9319222 0.89922655 prediction 0.436067763527013 Functional Gain - MYO1B ENSG00000128641 CDS Human protein_coding chr2:192261211 chr2:192261212 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_120613 0 0 1 0 2 MYO1B chr2:192261155 3'AG 192261155 Downstream 58bp
chr2 192261212 192261212 1 + C T PRAD 192261211 + 192261191 192261231 41 TTAGTAATTCAGTCTTATATCCGGGGTTGGAAGGTGAGTTT TTAGTAATTCAGTCTTATATCTGGGGTTGGAAGGTGAGTTT < 41bp 0.555702512220745 0.773736393984251 0.9319222 0.89922655 prediction 0.436067763527013 Functional Gain - MYO1B ENSG00000128641 CDS Human protein_coding chr2:192261211 chr2:192261212 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_120613 0 0 1 0 2 MYO1B chr2:192261223 5'GT 192261223 Upstream 12bp
chr17 74464925 74464925 1 + C T UCEC 74464924 + 74464904 74464944 41 TGTCAGCGGCGCCACACACTCCCTGCCAGTGAGTTTCGCTG TGTCAGCGGCGCCACACACTCTCTGCCAGTGAGTTTCGCTG < 41bp 0.458508042680756 0.718028688274749 0.04534003 0.14741704 prediction 0.436057376549498 Functional Gain - AANAT ENSG00000129673 CDS Human protein_coding chr17:74464924 chr17:74464925 nonsynonymous SNV 0.201 4 22 hm5C_associated_SNPs_120615 0 0 0 0 1 AANAT chr17:74464991 5'GT 74464991 Upstream 67bp
chr10 43615165 43615165 1 + A G COAD 43615162 + 43615142 43615182 41 CTCATTTGCCTGGCAGATCTCACAGGGGATGCAGTATCTGG CTCATTTGCCTGGCAGATCTCACGGGGGATGCAGTATCTGG < 41bp 0.582849466139915 0.800877114563135 0.7240954 0.89218247 prediction 0.43605529684644 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43615162 chr10:43615165 nonsynonymous SNV 0.914 1 24 hm5C_associated_SNPs_120616 0 0 0 0 1 RET chr10:43615193 5'GT 43615193 Upstream 29bp
chr15 74628598 74628598 1 + C A UCEC 74628597 + 74628577 74628617 41 CCTTACAGCCTCCCGCCTGCCCCAGGAGCCAGCATCTTTGG CCTTACAGCCTCCCGCCTGCCACAGGAGCCAGCATCTTTGG < 41bp 0.454916272426344 0.718013096738335 0.041797608 0.55234617 prediction 0.43602619347667 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74628597 chr15:74628598 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_120618 0 0 0 0 1 CCDC33 chr15:74628577 3'AG 74628577 Downstream 22bp
chr4 145640106 145640106 1 + A G COAD 145640103 + 145640083 145640123 41 CTCTACAAAATTGTAGATCCCAAAAGGTGAGATTTCCTTTT CTCTACAAAATTGTAGATCCCAAGAGGTGAGATTTCCTTTT < 41bp 0.491273681317941 0.718011722869577 0.24621305 0.4235786 prediction 0.436023445739155 Functional Gain - HHIP ENSG00000164161 CDS Human protein_coding chr4:145640103 chr4:145640106 synonymous SNV . 0 24 hm5C_associated_SNPs_120619 0 0 0 0 2 HHIP chr4:145640027 3'AG 145640027 Downstream 80bp
chr4 145640106 145640106 1 + A G COAD 145640103 + 145640083 145640123 41 CTCTACAAAATTGTAGATCCCAAAAGGTGAGATTTCCTTTT CTCTACAAAATTGTAGATCCCAAGAGGTGAGATTTCCTTTT < 41bp 0.491273681317941 0.718011722869577 0.24621305 0.4235786 prediction 0.436023445739155 Functional Gain - HHIP ENSG00000164161 CDS Human protein_coding chr4:145640103 chr4:145640106 synonymous SNV . 0 24 hm5C_associated_SNPs_120619 0 0 0 0 2 HHIP chr4:145640108 5'GT 145640108 Upstream 3bp
chr19 7592428 7592428 1 + C T UCEC 7592427 + 7592407 7592447 41 CTGCATCCAGGTGGATCCCCCCGAGCGGCCCCCTCCGCCCC CTGCATCCAGGTGGATCCCCCTGAGCGGCCCCCTCCGCCCC < 41bp 0.577124312414234 0.795128026392806 0.5783504 0.67972803 prediction 0.436007427957143 Functional Gain - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7592427 chr19:7592428 synonymous SNV . 0 22 hm5C_associated_SNPs_120625 0 0 0 0 2 MCOLN1 chr19:7592406 3'AG 7592406 Downstream 23bp
chr19 7592428 7592428 1 + C T UCEC 7592427 + 7592407 7592447 41 CTGCATCCAGGTGGATCCCCCCGAGCGGCCCCCTCCGCCCC CTGCATCCAGGTGGATCCCCCTGAGCGGCCCCCTCCGCCCC < 41bp 0.577124312414234 0.795128026392806 0.5783504 0.67972803 prediction 0.436007427957143 Functional Gain - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7592427 chr19:7592428 synonymous SNV . 0 22 hm5C_associated_SNPs_120625 0 0 0 0 2 MCOLN1 chr19:7592514 5'GT 7592514 Upstream 87bp
chr20 33513944 33513944 1 + T C LUAD 33513941 + 33513921 33513961 41 TACAGCAGAGGTGGAGTCAGCACTTGTGGAACATGAGGCTG TACAGCAGAGGTGGAGTCAGCACCTGTGGAACATGAGGCTG < 41bp 0.507481604487088 0.725479722367093 0.26602653 0.24123502 prediction 0.435996235760008 Functional Gain - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33513941 chr20:33513944 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_120626 0 0 1 12 1 ACSS2 chr20:33513908 3'AG 33513908 Downstream 37bp
chr10 77167056 77167056 1 + C T COAD 77167055 + 77167035 77167075 41 GTCGTTTGCGCTGCATTTATCCGAATACATCCAGCTCGCAG GTCGTTTGCGCTGCATTTATCTGAATACATCCAGCTCGCAG < 41bp 0.533240154890643 0.751234858527111 0.40659544 0.10297957 prediction 0.435989407272936 Functional Gain - ZNF503-AS2 ENSG00000237149 ncRNA_exonic Human antisense chr10:77167055 chr10:77167056 . . 0 22 hm5C_associated_SNPs_120627 0 0 1 0 1 ZNF503-AS2 chr10:77167013 3'AG 77167013 Downstream 44bp
chr9 116770653 116770653 1 + C T UCEC 116770652 + 116770632 116770672 41 GTGGAAGGGGCCCCTGAGAACCGGGCAGGTAAGTCCTTGGT GTGGAAGGGGCCCCTGAGAACTGGGCAGGTAAGTCCTTGGT < 41bp 0.552552462413892 0.770546548919778 0.43110955 0.29670805 prediction 0.435988173011771 Functional Gain - ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116770652 chr9:116770653 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_120628 0 0 0 0 1 ZNF618 chr9:116770659 5'GT 116770659 Upstream 7bp
chr22 24652890 24652890 1 + C G UCEC 24652889 + 24652869 24652909 41 CCCGGACCAGGCAGAAACCACCCAAGACTGAGGGGCTCGTG CCCGGACCAGGCAGAAACCACGCAAGACTGAGGGGCTCGTG < 41bp 0.420275481123162 0.717989682379916 0.16231087 0.68395454 prediction 0.435979364759831 Functional Gain - POM121L9P ENSG00000128262 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:24652889 chr22:24652890 . . 0 22 hm5C_associated_SNPs_120631 0 0 0 0 1 POM121L9P chr22:24652927 5'GT 24652927 Upstream 38bp
chr8 143562903 143562903 1 + A G THYM 143562900 + 143562880 143562920 41 CCGGGAGCACCTGGCCAAGGCTCAGCGAGGGCTGCCTGGGG CCGGGAGCACCTGGCCAAGGCTCGGCGAGGGCTGCCTGGGG < 41bp 0.469426551930113 0.717989474175182 0.68464506 0.74901223 prediction 0.435978948350363 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143562900 chr8:143562903 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_120632 0 0 0 0 1 ADGRB1 chr8:143562878 3'AG 143562878 Downstream 26bp
chr19 41825577 41825577 1 + C T SKCM 41825576 + 41825556 41825596 41 ACCCAGGAGGAGCTCAGTGCCCGCACCCCAACCCACCAGCC ACCCAGGAGGAGCTCAGTGCCTGCACCCCAACCCACCAGCC < 41bp 0.606064487079383 0.824043806195597 0.17501178 0.33442605 prediction 0.435958638232428 Functional Gain - CCDC97 ENSG00000142039 CDS Human protein_coding chr19:41825576 chr19:41825577 nonsynonymous SNV 0.282 4 22 hm5C_associated_SNPs_120635 0 0 1 0 1 CCDC97 chr19:41825479 3'AG 41825479 Downstream 99bp
chr3 160786674 160786674 1 + C T UCEC 160786673 + 160786653 160786693 41 CTCGGTCCCTGGGGGATTATCCGCTGAAAAATCTCAACGTG CTCGGTCCCTGGGGGATTATCTGCTGAAAAATCTCAACGTG < 41bp 0.486517403498795 0.717978841985148 0.86991143 0.670153 prediction 0.435957683970296 Functional Gain - PPM1L ENSG00000163590 CDS Human protein_coding chr3:160786673 chr3:160786674 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_120636 0 0 0 0 1 PPM1L chr3:160786599 3'AG 160786599 Downstream 76bp
chr21 47418338 47418338 1 + C T rs143755280 47418337 + 47418317 47418357 41 TCCGGGCAACAGGGGCGCTCCCGGGATAAACGTGAGTACGC TCCGGGCAACAGGGGCGCTCCTGGGATAAACGTGAGTACGC < 41bp 0.553255572157342 0.771228785044111 0.9101526 0.8822943 prediction 0.435946425773537 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47418337 chr21:47418338 synonymous SNV . 0 22 hm5C_associated_SNPs_120637 1 0 1 0 2 COL6A1 chr21:47418312 3'AG 47418312 Downstream 27bp
chr21 47418338 47418338 1 + C T rs143755280 47418337 + 47418317 47418357 41 TCCGGGCAACAGGGGCGCTCCCGGGATAAACGTGAGTACGC TCCGGGCAACAGGGGCGCTCCTGGGATAAACGTGAGTACGC < 41bp 0.553255572157342 0.771228785044111 0.9101526 0.8822943 prediction 0.435946425773537 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47418337 chr21:47418338 synonymous SNV . 0 22 hm5C_associated_SNPs_120637 1 0 1 0 2 COL6A1 chr21:47418347 5'GT 47418347 Upstream 10bp
chr16 57732871 57732871 1 + T C UCEC 57732868 + 57732848 57732888 41 TGGCAGACAACTTCTCCCGCCAGTACAGCCATCTGTGCCCG TGGCAGACAACTTCTCCCGCCAGCACAGCCATCTGTGCCCG < 41bp 0.502183090931968 0.720154134404373 0.09371096 0.23531237 prediction 0.435942086944809 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57732868 chr16:57732871 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_120638 0 0 0 0 1 DRC7 chr16:57732936 5'GT 57732936 Upstream 66bp
chr19 35556561 35556561 1 + C T LGG 35556560 + 35556540 35556580 41 GATGTTCTGTGCTGGCTACCCCGAGGGTGGCATTGATGCCT GATGTTCTGTGCTGGCTACCCTGAGGGTGGCATTGATGCCT < 41bp 0.476156960234594 0.717962420648252 0.9013005 0.78922665 prediction 0.435924841296503 Functional Gain - HPN ENSG00000105707 CDS Human protein_coding chr19:35556560 chr19:35556561 synonymous SNV . 0 22 hm5C_associated_SNPs_120642 0 0 1 0 1 HPN chr19:35556585 5'GT 35556585 Upstream 25bp
chr19 4318404 4318404 1 + C T OV 4318403 + 4318383 4318423 41 CCTGCGGGTGGATGATCTCTCCGTGGAGTGGGACGCTATGG CCTGCGGGTGGATGATCTCTCTGTGGAGTGGGACGCTATGG < 41bp 0.58083981338925 0.798794897207637 0.72936195 0.63646173 prediction 0.435910167636774 Functional Gain - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4318403 chr19:4318404 synonymous SNV . 0 22 hm5C_associated_SNPs_120643 0 0 1 0 1 FSD1 chr19:4318502 5'GT 4318502 Upstream 99bp
chr6 16247140 16247140 1 + T C UCEC 16247138 + 16247118 16247158 41 TACTCAGGGATTCCCATCATCGTGGCCAACATGGACACTGT TACTCAGGGATTCCCATCATCGCGGCCAACATGGACACTGT < 41bp 0.619441159904199 0.837394621606539 0.81911576 0.7307387 prediction 0.435906923404679 Functional Gain - GMPR ENSG00000137198 CDS Human protein_coding chr6:16247138 chr6:16247140 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_120644 0 0 1 0 2 GMPR chr6:16247073 3'AG 16247073 Downstream 68bp
chr6 16247140 16247140 1 + T C UCEC 16247138 + 16247118 16247158 41 TACTCAGGGATTCCCATCATCGTGGCCAACATGGACACTGT TACTCAGGGATTCCCATCATCGCGGCCAACATGGACACTGT < 41bp 0.619441159904199 0.837394621606539 0.81911576 0.7307387 prediction 0.435906923404679 Functional Gain - GMPR ENSG00000137198 CDS Human protein_coding chr6:16247138 chr6:16247140 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_120644 0 0 1 0 2 GMPR chr6:16247192 5'GT 16247192 Upstream 53bp
chr1 43162929 43162929 1 + C T UCEC 43162928 + 43162908 43162948 41 CGGGGATATAGACCACGATTCCGCAGGTATGGTCCACGTAA CGGGGATATAGACCACGATTCTGCAGGTATGGTCCACGTAA < 41bp 0.587482135827625 0.805435189375698 0.43072748 0.16807505 prediction 0.435906107096147 Functional Gain - YBX1 ENSG00000065978 CDS Human protein_coding chr1:43162928 chr1:43162929 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_120645 0 0 0 0 1 YBX1 chr1:43162933 5'GT 43162933 Upstream 5bp
chr19 49704027 49704027 1 + C T LUAD 49704026 + 49704006 49704046 41 CAGATCTTCGGGCAGATTCCCCAGGAGGACATGGACGGTAG CAGATCTTCGGGCAGATTCCCTAGGAGGACATGGACGGTAG < 41bp 0.468417401557521 0.717952894859411 0.7986776 0.8278537 prediction 0.435905789718821 Functional Gain - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49704026 chr19:49704027 stopgain 0.993 0 22 hm5C_associated_SNPs_120646 0 0 0 0 1 TRPM4 chr19:49704042 5'GT 49704042 Upstream 16bp
chr19 808629 808629 1 + C T STAD 808628 + 808608 808648 41 CACCAGAACGTGCAGCTGCCCCGCGAGGGCCAGGAGGACCA CACCAGAACGTGCAGCTGCCCTGCGAGGGCCAGGAGGACCA < 41bp 0.605214792976304 0.823166147373789 0.043732792 0.04906559 prediction 0.43590270879497 Functional Gain - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:808628 chr19:808629 nonsynonymous SNV 0.991 4 22 hm5C_associated_SNPs_120647 0 0 1 0 1 PTBP1 chr19:808546 3'AG 808546 Downstream 84bp
chr6 112375546 112375546 1 + C T SKCM 112375545 + 112375525 112375565 41 CTCTACCCCTCAGGGTGGCTCCACGGTCCCAGCGACATGCA CTCTACCCCTCAGGGTGGCTCTACGGTCCCAGCGACATGCA < 41bp 0.545938350563034 0.763889477947967 0.9229814 0.9372971 prediction 0.435902254769865 Functional Gain - WISP3 ENSG00000112761 CDS Human protein_coding chr6:112375545 chr6:112375546 nonsynonymous SNV 0.006 0 22 hm5C_associated_SNPs_120648 0 0 0 0 2 WISP3 chr6:112375538 3'AG 112375538 Downstream 9bp
chr6 112375546 112375546 1 + C T SKCM 112375545 + 112375525 112375565 41 CTCTACCCCTCAGGGTGGCTCCACGGTCCCAGCGACATGCA CTCTACCCCTCAGGGTGGCTCTACGGTCCCAGCGACATGCA < 41bp 0.545938350563034 0.763889477947967 0.9229814 0.9372971 prediction 0.435902254769865 Functional Gain - WISP3 ENSG00000112761 CDS Human protein_coding chr6:112375545 chr6:112375546 nonsynonymous SNV 0.006 0 22 hm5C_associated_SNPs_120648 0 0 0 0 2 WISP3 chr6:112375608 5'GT 112375608 Upstream 63bp
chr12 7947339 7947339 1 + C T SKCM 7947338 + 7947318 7947358 41 ACCAGGGATGCCTGGTGAACCCGACTGGGAACCTTCCAATG ACCAGGGATGCCTGGTGAACCTGACTGGGAACCTTCCAATG < 41bp 0.489445936655522 0.717949239033079 0.10322413 0.20119 prediction 0.435898478066159 Functional Gain - NANOG ENSG00000111704 CDS Human protein_coding chr12:7947338 chr12:7947339 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_120651 0 0 0 0 1 NANOG chr12:7947275 3'AG 7947275 Downstream 65bp
chr14 100438373 100438373 1 + C G rs577064116 100438369 + 100438349 100438389 41 GGGTCGCCCCTGGCCCGGCGCGCCCGTCCCCGGCAGCGACA GGGTCGCCCCTGGCCCGGCGCGCCGGTCCCCGGCAGCGACA < 41bp 0.626835745304896 0.844784369205134 0.3784549 0.5933716 prediction 0.435897247800478 Functional Gain - EVL ENSG00000196405 UTR5 Human protein_coding chr14:100438369 chr14:100438373 . . 0 25 hm5C_associated_SNPs_120653 0 0 0 0 1 EVL chr14:100438394 5'GT 100438394 Upstream 22bp
chr19 43859890 43859890 1 + A G STAD 43859887 + 43859867 43859907 41 GGACAACAGAAGAGATCTGCCCCAAGGGGACCACACACTGT GGACAACAGAAGAGATCTGCCCCGAGGGGACCACACACTGT < 41bp 0.560522005465005 0.778465896029511 0.07868788 0.027142733 prediction 0.435887781129012 Functional Gain - CD177 ENSG00000204936 CDS Human protein_coding chr19:43859887 chr19:43859890 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_120656 0 0 0 0 2 CD177 chr19:43859813 3'AG 43859813 Downstream 78bp
chr19 43859890 43859890 1 + A G STAD 43859887 + 43859867 43859907 41 GGACAACAGAAGAGATCTGCCCCAAGGGGACCACACACTGT GGACAACAGAAGAGATCTGCCCCGAGGGGACCACACACTGT < 41bp 0.560522005465005 0.778465896029511 0.07868788 0.027142733 prediction 0.435887781129012 Functional Gain - CD177 ENSG00000204936 CDS Human protein_coding chr19:43859887 chr19:43859890 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_120656 0 0 0 0 2 CD177 chr19:43859935 5'GT 43859935 Upstream 46bp
chr8 22460089 22460089 1 + A G HNSC 22460086 + 22460066 22460106 41 GGGACAAGGTCAAGGTCCTGCTCAACCGGATCTGCCGGAGA GGGACAAGGTCAAGGTCCTGCTCGACCGGATCTGCCGGAGA < 41bp 0.576034497168078 0.79397642893402 0.10295844 0.15441304 prediction 0.435883863531884 Functional Gain - C8orf58 ENSG00000241852 CDS Human protein_coding chr8:22460086 chr8:22460089 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_120657 0 0 1 0 3 C8orf58 chr8:22460050 3'AG 22460050 Downstream 40bp
chr8 22460089 22460089 1 + A G HNSC 22460086 + 22460066 22460106 41 GGGACAAGGTCAAGGTCCTGCTCAACCGGATCTGCCGGAGA GGGACAAGGTCAAGGTCCTGCTCGACCGGATCTGCCGGAGA < 41bp 0.576034497168078 0.79397642893402 0.10295844 0.15441304 prediction 0.435883863531884 Functional Gain - C8orf58 ENSG00000241852 CDS Human protein_coding chr8:22460086 chr8:22460089 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_120657 0 0 1 0 3 C8orf58 chr8:22460074 3'AG 22460074 Downstream 16bp
chr8 22460089 22460089 1 + A G HNSC 22460086 + 22460066 22460106 41 GGGACAAGGTCAAGGTCCTGCTCAACCGGATCTGCCGGAGA GGGACAAGGTCAAGGTCCTGCTCGACCGGATCTGCCGGAGA < 41bp 0.576034497168078 0.79397642893402 0.10295844 0.15441304 prediction 0.435883863531884 Functional Gain - C8orf58 ENSG00000241852 CDS Human protein_coding chr8:22460086 chr8:22460089 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_120657 0 0 1 0 3 C8orf58 chr8:22460156 5'GT 22460156 Upstream 68bp
chr16 31384675 31384675 1 + C T UCEC 31384674 + 31384654 31384694 41 CACCATCACCTTCTCCCACCCCGCAGGACTGTCCTACCGCT CACCATCACCTTCTCCCACCCTGCAGGACTGTCCTACCGCT < 41bp 0.435775018743859 0.717940657527902 0.16544473 0.27091682 prediction 0.435881315055804 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31384674 chr16:31384675 synonymous SNV . 0 22 hm5C_associated_SNPs_120658 0 0 0 0 1 ITGAX chr16:31384711 5'GT 31384711 Upstream 37bp
chr19 50905947 50905947 1 + A G SKCM 50905944 + 50905924 50905964 41 CACCGGAAGGGCCATGGCAGCGCATTGCGCCCTTGCGCGTG CACCGGAAGGGCCATGGCAGCGCGTTGCGCCCTTGCGCGTG < 41bp 0.588569462983806 0.806508650965699 0.1779367 0.25224745 prediction 0.435878375963786 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905944 chr19:50905947 nonsynonymous SNV 0.986 1 24 hm5C_associated_SNPs_120659 0 0 1 0 2 POLD1 chr19:50905869 3'AG 50905869 Downstream 79bp
chr19 50905947 50905947 1 + A G SKCM 50905944 + 50905924 50905964 41 CACCGGAAGGGCCATGGCAGCGCATTGCGCCCTTGCGCGTG CACCGGAAGGGCCATGGCAGCGCGTTGCGCCCTTGCGCGTG < 41bp 0.588569462983806 0.806508650965699 0.1779367 0.25224745 prediction 0.435878375963786 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905944 chr19:50905947 nonsynonymous SNV 0.986 1 24 hm5C_associated_SNPs_120659 0 0 1 0 2 POLD1 chr19:50905998 5'GT 50905998 Upstream 52bp
chrX 86887270 86887270 1 + T C PRAD 86887268 + 86887248 86887288 41 AGTTGGCTACATATTGGCACCATGAATGGCCGTAGGCTTCA AGTTGGCTACATATTGGCACCACGAATGGCCGTAGGCTTCA < 41bp 0.421074292568728 0.717938916172509 0.023166716 0.020188808 prediction 0.435877832345019 Functional Gain - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86887268 chrX:86887270 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_120660 0 0 0 0 1 KLHL4 chrX:86887210 3'AG 86887210 Downstream 61bp
chr12 8610513 8610513 1 + C T SKCM 8610512 + 8610492 8610532 41 AGAGAAAAGAGGCTGGTTGTCCCTGAGACTCTGGTCTGTGG AGAGAAAAGAGGCTGGTTGTCTCTGAGACTCTGGTCTGTGG < 41bp 0.549636091821522 0.767573836719854 0.1448006 0.13105997 prediction 0.435875489796663 Functional Gain - CLEC6A ENSG00000205846 CDS Human protein_coding chr12:8610512 chr12:8610513 synonymous SNV . 0 22 hm5C_associated_SNPs_120661 0 0 0 0 2 CLEC6A chr12:8610494 3'AG 8610494 Downstream 20bp
chr12 8610513 8610513 1 + C T SKCM 8610512 + 8610492 8610532 41 AGAGAAAAGAGGCTGGTTGTCCCTGAGACTCTGGTCTGTGG AGAGAAAAGAGGCTGGTTGTCTCTGAGACTCTGGTCTGTGG < 41bp 0.549636091821522 0.767573836719854 0.1448006 0.13105997 prediction 0.435875489796663 Functional Gain - CLEC6A ENSG00000205846 CDS Human protein_coding chr12:8610512 chr12:8610513 synonymous SNV . 0 22 hm5C_associated_SNPs_120661 0 0 0 0 2 CLEC6A chr12:8610583 5'GT 8610583 Upstream 71bp
chr17 79974398 79974398 1 + C T ESCA 79974397 + 79974377 79974417 41 TGCACTTGGGAGCCGAGGAGCCGGCAGGTGAGTGTCAGTGG TGCACTTGGGAGCCGAGGAGCTGGCAGGTGAGTGTCAGTGG < 41bp 0.496303999000885 0.717922091500467 0.87547654 0.82922816 prediction 0.435844183000933 Functional Gain - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79974397 chr17:79974398 nonsynonymous SNV 0.009 2 22 hm5C_associated_SNPs_120666 0 0 1 0 2 ASPSCR1 chr17:79974352 3'AG 79974352 Downstream 47bp
chr17 79974398 79974398 1 + C T ESCA 79974397 + 79974377 79974417 41 TGCACTTGGGAGCCGAGGAGCCGGCAGGTGAGTGTCAGTGG TGCACTTGGGAGCCGAGGAGCTGGCAGGTGAGTGTCAGTGG < 41bp 0.496303999000885 0.717922091500467 0.87547654 0.82922816 prediction 0.435844183000933 Functional Gain - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79974397 chr17:79974398 nonsynonymous SNV 0.009 2 22 hm5C_associated_SNPs_120666 0 0 1 0 2 ASPSCR1 chr17:79974403 5'GT 79974403 Upstream 6bp
chr17 57682512 57682512 1 + T C UCEC 57682510 + 57682490 57682530 41 CGTTTTGCACAATGGATGGTCGTGGAAGCCCAGTTCACATT CGTTTTGCACAATGGATGGTCGCGGAAGCCCAGTTCACATT < 41bp 0.4432962368467 0.717921257735315 0.62083405 0.8305056 prediction 0.435842515470629 Functional Gain - DHX40 ENSG00000108406 CDS Human protein_coding chr17:57682510 chr17:57682512 synonymous SNV . 0 23 hm5C_associated_SNPs_120667 0 0 1 0 2 DHX40 chr17:57682476 3'AG 57682476 Downstream 37bp
chr17 57682512 57682512 1 + T C UCEC 57682510 + 57682490 57682530 41 CGTTTTGCACAATGGATGGTCGTGGAAGCCCAGTTCACATT CGTTTTGCACAATGGATGGTCGCGGAAGCCCAGTTCACATT < 41bp 0.4432962368467 0.717921257735315 0.62083405 0.8305056 prediction 0.435842515470629 Functional Gain - DHX40 ENSG00000108406 CDS Human protein_coding chr17:57682510 chr17:57682512 synonymous SNV . 0 23 hm5C_associated_SNPs_120667 0 0 1 0 2 DHX40 chr17:57682545 5'GT 57682545 Upstream 34bp
chr7 99688276 99688276 1 + A G ESCA 99688273 + 99688253 99688293 41 GAACCCTATGACCAAGCACACAGATGTGAGTAATACTCCAT GAACCCTATGACCAAGCACACAGGTGTGAGTAATACTCCAT < 41bp 0.482663740474816 0.717910075766591 0.9351617 0.94868106 prediction 0.435820151533182 Functional Gain - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99688273 chr7:99688276 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_120674 0 0 1 0 2 COPS6 chr7:99688215 3'AG 99688215 Downstream 62bp
chr7 99688276 99688276 1 + A G ESCA 99688273 + 99688253 99688293 41 GAACCCTATGACCAAGCACACAGATGTGAGTAATACTCCAT GAACCCTATGACCAAGCACACAGGTGTGAGTAATACTCCAT < 41bp 0.482663740474816 0.717910075766591 0.9351617 0.94868106 prediction 0.435820151533182 Functional Gain - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99688273 chr7:99688276 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_120674 0 0 1 0 2 COPS6 chr7:99688277 5'GT 99688277 Upstream 2bp
chr19 42383645 42383645 1 + C T SKCM 42383644 + 42383624 42383664 41 CCTGGACATGGGGGAGGGCACCAAGAACCGAATCATCACAG CCTGGACATGGGGGAGGGCACTAAGAACCGAATCATCACAG < 41bp 0.577743770976433 0.79564981511514 0.27334714 0.35859358 prediction 0.435812088277413 Functional Gain - CD79A ENSG00000105369 CDS Human protein_coding chr19:42383644 chr19:42383645 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_120675 0 0 0 0 1 CD79A chr19:42383605 3'AG 42383605 Downstream 41bp
chr12 31250930 31250930 1 + C T UCEC 31250929 + 31250909 31250949 41 TTGCGGGGGGTACCATGCAGCCGGTAAGGACACCTTTCCCA TTGCGGGGGGTACCATGCAGCTGGTAAGGACACCTTTCCCA < 41bp 0.541807369591477 0.759703877318312 0.22286555 0.26551068 prediction 0.435793015453671 Functional Gain - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31250929 chr12:31250930 nonsynonymous SNV 0.621 4 22 hm5C_associated_SNPs_120680 0 0 1 0 1 DDX11 chr12:31250931 5'GT 31250931 Upstream 2bp
chrX 69510335 69510335 1 + C T rs1199470 69510334 + 69510314 69510354 41 GGAAGAGGTGAAGGGAATTCCCGTAAGAGTGGCGCTGCGTT GGAAGAGGTGAAGGGAATTCCTGTAAGAGTGGCGCTGCGTT < 41bp 0.482732367012417 0.717895008135444 0.2884832 0.38356274 prediction 0.435790016270889 Functional Gain - KIF4A ENSG00000090889 CDS Human protein_coding chrX:69510334 chrX:69510335 synonymous SNV . 0 22 hm5C_associated_SNPs_120682 0 0 1 0 2 KIF4A chrX:69510288 3'AG 69510288 Downstream 48bp
chrX 69510335 69510335 1 + C T rs1199470 69510334 + 69510314 69510354 41 GGAAGAGGTGAAGGGAATTCCCGTAAGAGTGGCGCTGCGTT GGAAGAGGTGAAGGGAATTCCTGTAAGAGTGGCGCTGCGTT < 41bp 0.482732367012417 0.717895008135444 0.2884832 0.38356274 prediction 0.435790016270889 Functional Gain - KIF4A ENSG00000090889 CDS Human protein_coding chrX:69510334 chrX:69510335 synonymous SNV . 0 22 hm5C_associated_SNPs_120682 0 0 1 0 2 KIF4A chrX:69510428 5'GT 69510428 Upstream 94bp
chr22 29627634 29627634 1 + C T UCEC 29627633 + 29627613 29627653 41 CACCGGCCCCAAGGGAGATGCCGGCAGTCGGGGCCCAATGG CACCGGCCCCAAGGGAGATGCTGGCAGTCGGGGCCCAATGG < 41bp 0.482274890064768 0.717891988985452 0.9167774 0.88728225 prediction 0.435783977970905 Functional Gain - EMID1 ENSG00000186998 CDS Human protein_coding chr22:29627633 chr22:29627634 synonymous SNV . 0 22 hm5C_associated_SNPs_120684 0 0 1 0 2 EMID1 chr22:29627582 3'AG 29627582 Downstream 53bp
chr22 29627634 29627634 1 + C T UCEC 29627633 + 29627613 29627653 41 CACCGGCCCCAAGGGAGATGCCGGCAGTCGGGGCCCAATGG CACCGGCCCCAAGGGAGATGCTGGCAGTCGGGGCCCAATGG < 41bp 0.482274890064768 0.717891988985452 0.9167774 0.88728225 prediction 0.435783977970905 Functional Gain - EMID1 ENSG00000186998 CDS Human protein_coding chr22:29627633 chr22:29627634 synonymous SNV . 0 22 hm5C_associated_SNPs_120684 0 0 1 0 2 EMID1 chr22:29627671 5'GT 29627671 Upstream 38bp
chr15 43443992 43443992 1 + C T PRAD 43443991 + 43443971 43444011 41 CATTATCTGGTCTTTAGGTACCGGATTTTTGCTTTTGATCA CATTATCTGGTCTTTAGGTACTGGATTTTTGCTTTTGATCA < 41bp 0.567495156415639 0.785379941793729 0.31700256 0.2734474 prediction 0.43576957075618 Functional Gain - TMEM62 ENSG00000137842 CDS Human protein_coding chr15:43443991 chr15:43443992 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_120687 0 0 0 0 1 TMEM62 chr15:43443988 3'AG 43443988 Downstream 5bp
chr10 106025870 106025870 1 + T G GBM 106025868 + 106025848 106025888 41 ACTAATAAGAAGACGACCTTCTTTGGTGGCAATTCTATCTC ACTAATAAGAAGACGACCTTCTGTGGTGGCAATTCTATCTC < 41bp 0.381954094000518 0.717879948309309 0.053399086 0.117982894 prediction 0.435759896618618 Functional Gain - GSTO1 ENSG00000148834 CDS Human protein_coding chr10:106025868 chr10:106025870 nonsynonymous SNV 0.912 4 23 hm5C_associated_SNPs_120689 0 0 1 0 2 GSTO1 chr10:106025842 3'AG 106025842 Downstream 29bp
chr10 106025870 106025870 1 + T G GBM 106025868 + 106025848 106025888 41 ACTAATAAGAAGACGACCTTCTTTGGTGGCAATTCTATCTC ACTAATAAGAAGACGACCTTCTGTGGTGGCAATTCTATCTC < 41bp 0.381954094000518 0.717879948309309 0.053399086 0.117982894 prediction 0.435759896618618 Functional Gain - GSTO1 ENSG00000148834 CDS Human protein_coding chr10:106025868 chr10:106025870 nonsynonymous SNV 0.912 4 23 hm5C_associated_SNPs_120689 0 0 1 0 2 GSTO1 chr10:106025948 5'GT 106025948 Upstream 79bp
chr17 40765719 40765719 1 + C A BLCA 40765718 + 40765698 40765738 41 GCCACAGACCGCCTGCACATCCAGAACCCATCCTTCTCCCA GCCACAGACCGCCTGCACATCAAGAACCCATCCTTCTCCCA < 41bp 0.616894083776104 0.834769437512348 0.06911442 0.08497143 prediction 0.435750707472489 Functional Gain - TUBG1 ENSG00000131462 CDS Human protein_coding chr17:40765718 chr17:40765719 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_120693 0 0 1 0 2 TUBG1 chr17:40765665 3'AG 40765665 Downstream 55bp
chr17 40765719 40765719 1 + C A BLCA 40765718 + 40765698 40765738 41 GCCACAGACCGCCTGCACATCCAGAACCCATCCTTCTCCCA GCCACAGACCGCCTGCACATCAAGAACCCATCCTTCTCCCA < 41bp 0.616894083776104 0.834769437512348 0.06911442 0.08497143 prediction 0.435750707472489 Functional Gain - TUBG1 ENSG00000131462 CDS Human protein_coding chr17:40765718 chr17:40765719 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_120693 0 0 1 0 2 TUBG1 chr17:40765751 5'GT 40765751 Upstream 33bp
chr7 73604618 73604618 1 + C A THCA 73604617 + 73604597 73604637 41 TCTAGAGGTGGATGGGATTCCCGGGATGACTTCAATTCTGG TCTAGAGGTGGATGGGATTCCAGGGATGACTTCAATTCTGG < 41bp 0.609782703090409 0.827654870918469 0.62976015 0.86852837 prediction 0.43574433565612 Functional Gain - EIF4H ENSG00000106682 CDS Human protein_coding chr7:73604617 chr7:73604618 synonymous SNV . 0 22 hm5C_associated_SNPs_120694 0 0 1 0 2 EIF4H chr7:73604577 3'AG 73604577 Downstream 42bp
chr7 73604618 73604618 1 + C A THCA 73604617 + 73604597 73604637 41 TCTAGAGGTGGATGGGATTCCCGGGATGACTTCAATTCTGG TCTAGAGGTGGATGGGATTCCAGGGATGACTTCAATTCTGG < 41bp 0.609782703090409 0.827654870918469 0.62976015 0.86852837 prediction 0.43574433565612 Functional Gain - EIF4H ENSG00000106682 CDS Human protein_coding chr7:73604617 chr7:73604618 synonymous SNV . 0 22 hm5C_associated_SNPs_120694 0 0 1 0 2 EIF4H chr7:73604636 5'GT 73604636 Upstream 19bp
chr21 46020742 46020742 1 + C A rs1211104 46020741 + 46020721 46020761 41 GTGTGTCCAGCCCCTGCTGCCCAGTGACCTGTGAGCCCAGC GTGTGTCCAGCCCCTGCTGCCAAGTGACCTGTGAGCCCAGC < 41bp 0.598263922751214 0.816135587747828 0.13344577 0.88246405 prediction 0.435743329993229 Functional Gain - KRTAP10-7 ENSG00000205441 CDS Human other chr21:46020741 chr21:46020742 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_120695 0 0 0 0 1 KRTAP10-7 chr21:46020671 3'AG 46020671 Downstream 72bp
chr7 142564271 142564271 1 + C G SKCM 142564270 + 142564250 142564290 41 CCTGTGGTGCACCAGGTGAGCCGGGCATCCAACAGCATCAC CCTGTGGTGCACCAGGTGAGCGGGGCATCCAACAGCATCAC < 41bp 0.675360777975733 0.893231410531573 0.8689406 0.9142704 prediction 0.435741265111681 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142564270 chr7:142564271 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_120696 0 0 1 0 2 EPHB6 chr7:142564236 3'AG 142564236 Downstream 36bp
chr7 142564271 142564271 1 + C G SKCM 142564270 + 142564250 142564290 41 CCTGTGGTGCACCAGGTGAGCCGGGCATCCAACAGCATCAC CCTGTGGTGCACCAGGTGAGCGGGGCATCCAACAGCATCAC < 41bp 0.675360777975733 0.893231410531573 0.8689406 0.9142704 prediction 0.435741265111681 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142564270 chr7:142564271 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_120696 0 0 1 0 2 EPHB6 chr7:142564360 5'GT 142564360 Upstream 90bp
chr1 1444620 1444620 1 + C A rs148574217 1444619 + 1444599 1444639 41 CTCCGAGGACGGGGTCCTGACCGAGGCCATGATGGACACCC CTCCGAGGACGGGGTCCTGACAGAGGCCATGATGGACACCC < 41bp 0.588787664052047 0.806650895924518 0.88745356 0.8762089 prediction 0.435726463744943 Functional Gain - ATAD3B;ATAD3A ENSG00000160072;ENSG00000197785 intergenic Human other chr1:1444619 chr1:1444620 . . 0 22 hm5C_associated_SNPs_120698 0 0 0 0 1 ATAD3B;ATAD3A chr1:1444585 3'AG 1444585 Downstream 36bp
chr17 7557506 7557506 1 + C T HNSC 7557505 + 7557485 7557525 41 GACCCAGCTGGGCAACTGCTCCGGCATTGGGGACTCCACCC GACCCAGCTGGGCAACTGCTCTGGCATTGGGGACTCCACCC < 41bp 0.578343677342298 0.79619542601223 0.8955058 0.78374726 prediction 0.435703497339865 Functional Gain - ATP1B2 ENSG00000129244 CDS Human protein_coding chr17:7557505 chr17:7557506 synonymous SNV . 0 22 hm5C_associated_SNPs_120702 0 0 1 0 1 ATP1B2 chr17:7557575 5'GT 7557575 Upstream 70bp
chr1 3348603 3348603 1 + C T UCEC 3348602 + 3348582 3348622 41 TTTGGGAAGGGGCTGGACCTCCGCAGAGCAGCTGAGGAAGC TTTGGGAAGGGGCTGGACCTCTGCAGAGCAGCTGAGGAAGC < 41bp 0.602295656766467 0.820146302168807 0.6730342 0.872521 prediction 0.43570129080468 Functional Gain - PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3348602 chr1:3348603 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_120704 0 0 0 0 1 PRDM16 chr1:3348530 3'AG 3348530 Downstream 74bp
chr1 18703404 18703404 1 + C T CESC 18703403 + 18703383 18703423 41 GGTGCTGGAGCGGGTTCCCGCCGAGCTCAATGGCTCCATGT GGTGCTGGAGCGGGTTCCCGCTGAGCTCAATGGCTCCATGT < 41bp 0.562407347620446 0.780253333832242 0.6038731 0.23091364 prediction 0.435691972423592 Functional Gain - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18703403 chr1:18703404 synonymous SNV . 0 22 hm5C_associated_SNPs_120706 0 0 0 0 1 IGSF21 chr1:18703486 5'GT 18703486 Upstream 83bp
chr9 131285958 131285958 1 + C T UCEC 131285957 + 131285937 131285977 41 CGGAAGGAAGAAGGCCAGATCCGCCTGCGGGCCCTCTATGC CGGAAGGAAGAAGGCCAGATCTGCCTGCGGGCCCTCTATGC < 41bp 0.466886980153123 0.717845938308123 0.20999953 0.19461605 prediction 0.435691876616246 Functional Gain - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131285957 chr9:131285958 nonsynonymous SNV 0.179 4 22 hm5C_associated_SNPs_120707 0 0 1 0 1 GLE1 chr9:131285871 3'AG 131285871 Downstream 88bp
chr9 101602320 101602320 1 + C T UCEC 101602319 + 101602299 101602339 41 GTGACAGAGAGGAAGCAGCTCCGGGACAAGCTCCAGTGTAA GTGACAGAGAGGAAGCAGCTCTGGGACAAGCTCCAGTGTAA < 41bp 0.566641287602958 0.784482695090514 0.70015717 0.57419235 prediction 0.435682814975111 Functional Gain - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101602319 chr9:101602320 nonsynonymous SNV 0.706 4 22 hm5C_associated_SNPs_120711 0 0 1 0 2 GALNT12 chr9:101602284 3'AG 101602284 Downstream 37bp
chr9 101602320 101602320 1 + C T UCEC 101602319 + 101602299 101602339 41 GTGACAGAGAGGAAGCAGCTCCGGGACAAGCTCCAGTGTAA GTGACAGAGAGGAAGCAGCTCTGGGACAAGCTCCAGTGTAA < 41bp 0.566641287602958 0.784482695090514 0.70015717 0.57419235 prediction 0.435682814975111 Functional Gain - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101602319 chr9:101602320 nonsynonymous SNV 0.706 4 22 hm5C_associated_SNPs_120711 0 0 1 0 2 GALNT12 chr9:101602415 5'GT 101602415 Upstream 96bp
chr16 67236560 67236560 1 + C T STAD 67236559 + 67236539 67236579 41 GTGGTGCGGGAGCAGCTGGCCCGCACTCTGGCCCTGAAGCC GTGGTGCGGGAGCAGCTGGCCTGCACTCTGGCCCTGAAGCC < 41bp 0.596746147517119 0.814586436091518 0.14115846 0.2586164 prediction 0.435680577148799 Functional Gain - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67236559 chr16:67236560 nonsynonymous SNV 0.963 4 22 hm5C_associated_SNPs_120712 0 0 1 0 1 ELMO3 chr16:67236530 3'AG 67236530 Downstream 31bp
chr20 55908269 55908269 1 + A G rs3736832 55908266 + 55908246 55908286 41 TTGAAGATTCTGTGGGTCTTCAGATGGTATCCCATTGCACC TTGAAGATTCTGTGGGTCTTCAGGTGGTATCCCATTGCACC < 41bp 0.543249042453533 0.761075107884122 0.9304292 0.93579173 prediction 0.435652130861179 Functional Gain - SPO11 ENSG00000054796 CDS Human protein_coding chr20:55908266 chr20:55908269 nonsynonymous SNV 0.983 1 24 hm5C_associated_SNPs_120716 0 0 0 0 2 SPO11 chr20:55908244 3'AG 55908244 Downstream 26bp
chr20 55908269 55908269 1 + A G rs3736832 55908266 + 55908246 55908286 41 TTGAAGATTCTGTGGGTCTTCAGATGGTATCCCATTGCACC TTGAAGATTCTGTGGGTCTTCAGGTGGTATCCCATTGCACC < 41bp 0.543249042453533 0.761075107884122 0.9304292 0.93579173 prediction 0.435652130861179 Functional Gain - SPO11 ENSG00000054796 CDS Human protein_coding chr20:55908266 chr20:55908269 nonsynonymous SNV 0.983 1 24 hm5C_associated_SNPs_120716 0 0 0 0 2 SPO11 chr20:55908332 5'GT 55908332 Upstream 64bp
chr2 233408081 233408081 1 + C A COAD 233408077 + 233408057 233408097 41 AGAAGGTGCCTGAAACCTCCCAGGCGGTGCCACTCATCAGC AGAAGGTGCCTGAAACCTCCCAGGAGGTGCCACTCATCAGC < 41bp 0.718718797292436 0.936531866058374 0.8155247 0.88238287 prediction 0.435626137531876 Functional Gain - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233408077 chr2:233408081 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_120719 0 0 0 0 2 CHRNG chr2:233407985 3'AG 233407985 Downstream 97bp
chr2 233408081 233408081 1 + C A COAD 233408077 + 233408057 233408097 41 AGAAGGTGCCTGAAACCTCCCAGGCGGTGCCACTCATCAGC AGAAGGTGCCTGAAACCTCCCAGGAGGTGCCACTCATCAGC < 41bp 0.718718797292436 0.936531866058374 0.8155247 0.88238287 prediction 0.435626137531876 Functional Gain - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233408077 chr2:233408081 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_120719 0 0 0 0 2 CHRNG chr2:233408099 5'GT 233408099 Upstream 19bp
chr11 44079911 44079911 1 + C T PRAD 44079910 + 44079890 44079930 41 CCCACCAATTGCTACCGGCTCCGGGAAGCTCACAAGTACAT CCCACCAATTGCTACCGGCTCTGGGAAGCTCACAAGTACAT < 41bp 0.46705365702563 0.717798721174061 0.7371521 0.37755093 prediction 0.435597442348122 Functional Gain - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44079910 chr11:44079911 nonsynonymous SNV 0.018 2 22 hm5C_associated_SNPs_120722 0 0 0 0 2 ACCSL chr11:44079867 3'AG 44079867 Downstream 45bp
chr11 44079911 44079911 1 + C T PRAD 44079910 + 44079890 44079930 41 CCCACCAATTGCTACCGGCTCCGGGAAGCTCACAAGTACAT CCCACCAATTGCTACCGGCTCTGGGAAGCTCACAAGTACAT < 41bp 0.46705365702563 0.717798721174061 0.7371521 0.37755093 prediction 0.435597442348122 Functional Gain - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44079910 chr11:44079911 nonsynonymous SNV 0.018 2 22 hm5C_associated_SNPs_120722 0 0 0 0 2 ACCSL chr11:44080009 5'GT 44080009 Upstream 99bp
chr19 54445295 54445295 1 + C T STAD 54445294 + 54445274 54445314 41 CCTTGCCTTGCCGCAGGGGGCCGGCGTGATGTCCGTGTACC CCTTGCCTTGCCGCAGGGGGCTGGCGTGATGTCCGTGTACC < 41bp 0.496590525938677 0.717796630222699 0.83544225 0.6933007 prediction 0.435593260445398 Functional Gain - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54445294 chr19:54445295 synonymous SNV . 0 22 hm5C_associated_SNPs_120723 0 0 0 0 1 CACNG7 chr19:54445290 3'AG 54445290 Downstream 6bp
chr1 231334832 231334832 1 + T G READ 231334829 + 231334809 231334849 41 ACGAAGCCTGCCTCGTTGCTCAGTGTGATGCCCTTGTGGAT ACGAAGCCTGCCTCGTTGCTCAGGGTGATGCCCTTGTGGAT < 41bp 0.31153601623821 0.717794693942785 0.33565623 0.93652725 prediction 0.435589387885571 Functional Gain - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231334829 chr1:231334832 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_120724 0 0 0 0 2 TRIM67 chr1:231334793 3'AG 231334793 Downstream 40bp
chr1 231334832 231334832 1 + T G READ 231334829 + 231334809 231334849 41 ACGAAGCCTGCCTCGTTGCTCAGTGTGATGCCCTTGTGGAT ACGAAGCCTGCCTCGTTGCTCAGGGTGATGCCCTTGTGGAT < 41bp 0.31153601623821 0.717794693942785 0.33565623 0.93652725 prediction 0.435589387885571 Functional Gain - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231334829 chr1:231334832 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_120724 0 0 0 0 2 TRIM67 chr1:231334915 5'GT 231334915 Upstream 84bp
chr16 1825723 1825723 1 + T C ACC 1825721 + 1825701 1825741 41 GCTGAAGGGGGGCAGGATCACCTCAAGGTAGTGGTGCCTCC GCTGAAGGGGGGCAGGATCACCCCAAGGTAGTGGTGCCTCC < 41bp 0.582144643747634 0.799930966884954 0.28606692 0.30618218 prediction 0.435572646274639 Functional Gain - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825721 chr16:1825723 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_120726 0 0 0 0 1 EME2 chr16:1825727 5'GT 1825727 Upstream 5bp
chr11 63307030 63307030 1 + C T PAAD 63307029 + 63307009 63307049 41 GGAGACCTGATTGAGATTTTCCGCCTTGGCTATGAGCACTG GGAGACCTGATTGAGATTTTCTGCCTTGGCTATGAGCACTG < 41bp 0.473310668067166 0.717778062306355 0.020758986 0.04466048 prediction 0.43555612461271 Functional Gain - RARRES3 ENSG00000133321 CDS Human protein_coding chr11:63307029 chr11:63307030 nonsynonymous SNV 0.117 3 22 hm5C_associated_SNPs_120732 0 0 0 0 2 RARRES3 chr11:63306988 3'AG 63306988 Downstream 43bp
chr11 63307030 63307030 1 + C T PAAD 63307029 + 63307009 63307049 41 GGAGACCTGATTGAGATTTTCCGCCTTGGCTATGAGCACTG GGAGACCTGATTGAGATTTTCTGCCTTGGCTATGAGCACTG < 41bp 0.473310668067166 0.717778062306355 0.020758986 0.04466048 prediction 0.43555612461271 Functional Gain - RARRES3 ENSG00000133321 CDS Human protein_coding chr11:63307029 chr11:63307030 nonsynonymous SNV 0.117 3 22 hm5C_associated_SNPs_120732 0 0 0 0 2 RARRES3 chr11:63307096 5'GT 63307096 Upstream 67bp
chr5 148577937 148577937 1 + C T LUSC 148577936 + 148577916 148577956 41 GCCCTGGGCCGCACTTACCACCCCAAGTGCTTCGTGTGCAG GCCCTGGGCCGCACTTACCACTCCAAGTGCTTCGTGTGCAG < 41bp 0.636466229268563 0.854243105900548 0.03487727 0.94544494 prediction 0.43555375326397 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148577936 chr5:148577937 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_120734 0 0 0 0 1 ABLIM3 chr5:148577965 5'GT 148577965 Upstream 29bp
chr11 66325642 66325642 1 + C A LUAD 66325641 + 66325621 66325661 41 TCCCTGCACGAAGCCTGGACCCGGGGTAGGTAGACCTACCT TCCCTGCACGAAGCCTGGACCAGGGGTAGGTAGACCTACCT < 41bp 0.622560597125494 0.840337053487879 0.9321652 0.94164425 prediction 0.435552912724769 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66325641 chr11:66325642 unknown . 0 22 hm5C_associated_SNPs_120735 0 0 0 0 1 ACTN3 chr11:66325645 5'GT 66325645 Upstream 4bp
chr1 210010491 210010491 1 + C T UCEC 210010490 + 210010470 210010510 41 CTTGGCAACAATAGCAGACGCCGAAGCCAGAAGTTTGGAGT CTTGGCAACAATAGCAGACGCTGAAGCCAGAAGTTTGGAGT < 41bp 0.472754192223831 0.717775361242325 0.1673199 0.17763734 prediction 0.43555072248465 Functional Gain - DIEXF ENSG00000117597 CDS Human protein_coding chr1:210010490 chr1:210010491 stopgain 0.956 1 22 hm5C_associated_SNPs_120736 0 0 0 0 1 DIEXF chr1:210010556 5'GT 210010556 Upstream 66bp
chr7 127344968 127344968 1 + C T SKCM 127344967 + 127344947 127344987 41 TGGTCGATTGCAGTTTACACCCGGGGCGCAGAAAAGCTGAG TGGTCGATTGCAGTTTACACCTGGGGCGCAGAAAAGCTGAG < 41bp 0.486307016409351 0.717775293850863 0.81121945 0.56634855 prediction 0.435550587701727 Functional Gain - SND1 ENSG00000197157 CDS Human protein_coding chr7:127344967 chr7:127344968 nonsynonymous SNV 0.832 2 22 hm5C_associated_SNPs_120737 0 0 1 0 2 SND1 chr7:127344893 3'AG 127344893 Downstream 76bp
chr7 127344968 127344968 1 + C T SKCM 127344967 + 127344947 127344987 41 TGGTCGATTGCAGTTTACACCCGGGGCGCAGAAAAGCTGAG TGGTCGATTGCAGTTTACACCTGGGGCGCAGAAAAGCTGAG < 41bp 0.486307016409351 0.717775293850863 0.81121945 0.56634855 prediction 0.435550587701727 Functional Gain - SND1 ENSG00000197157 CDS Human protein_coding chr7:127344967 chr7:127344968 nonsynonymous SNV 0.832 2 22 hm5C_associated_SNPs_120737 0 0 1 0 2 SND1 chr7:127344999 5'GT 127344999 Upstream 32bp
chr19 34830825 34830825 1 + C T COAD 34830824 + 34830804 34830844 41 TGCTGCAGAGAAGCCTTGATCCTGAGAAGACCCTGGGTCTA TGCTGCAGAGAAGCCTTGATCTTGAGAAGACCCTGGGTCTA < 41bp 0.614560103775211 0.832333090491502 0.43587226 0.13253987 prediction 0.435545973432582 Functional Gain - KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34830824 chr19:34830825 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_120739 0 0 1 0 2 KIAA0355 chr19:34830772 3'AG 34830772 Downstream 54bp
chr19 34830825 34830825 1 + C T COAD 34830824 + 34830804 34830844 41 TGCTGCAGAGAAGCCTTGATCCTGAGAAGACCCTGGGTCTA TGCTGCAGAGAAGCCTTGATCTTGAGAAGACCCTGGGTCTA < 41bp 0.614560103775211 0.832333090491502 0.43587226 0.13253987 prediction 0.435545973432582 Functional Gain - KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34830824 chr19:34830825 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_120739 0 0 1 0 2 KIAA0355 chr19:34830897 5'GT 34830897 Upstream 73bp
chr11 6291483 6291483 1 + C A LUAD 6291482 + 6291462 6291502 41 GACTACTCATGGTGCCCTACCCCGTGTACACTGTCGTGCAA GACTACTCATGGTGCCCTACCACGTGTACACTGTCGTGCAA < 41bp 0.618351165760815 0.836116141759545 0.34001225 0.74540424 prediction 0.43552995199746 Functional Gain - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6291482 chr11:6291483 nonsynonymous SNV 0.960 4 22 hm5C_associated_SNPs_120741 0 0 0 0 1 CCKBR chr11:6291567 5'GT 6291567 Upstream 85bp
chr4 178887881 178887881 1 + C A UCEC 178887880 + 178887860 178887900 41 GCTCACTGCAACCTCTGCCTCCTGGGCTCAAGGCATCCTTC GCTCACTGCAACCTCTGCCTCATGGGCTCAAGGCATCCTTC < 41bp 0.460852744664284 0.717757187497783 0.08764389 0.23261154 prediction 0.435514374995567 Functional Gain - LINC01098 ENSG00000231171 CDS Human lincRNA chr4:178887880 chr4:178887881 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_120744 0 0 0 0 1 LINC01098 chr4:178887932 5'GT 178887932 Upstream 52bp
chr1 84876615 84876615 1 + C A SARC 84876614 + 84876594 84876634 41 AGAAGGCTATGATTATCCACCCACAGGGAGACGAAATGGAC AGAAGGCTATGATTATCCACCAACAGGGAGACGAAATGGAC < 41bp 0.451570373408154 0.717749238630309 0.0073425174 0.028296411 prediction 0.435498477260618 Functional Gain - DNASE2B ENSG00000137976 CDS Human protein_coding chr1:84876614 chr1:84876615 synonymous SNV . 0 22 hm5C_associated_SNPs_120747 0 0 0 0 3 DNASE2B chr1:84876521 3'AG 84876521 Downstream 95bp
chr1 84876615 84876615 1 + C A SARC 84876614 + 84876594 84876634 41 AGAAGGCTATGATTATCCACCCACAGGGAGACGAAATGGAC AGAAGGCTATGATTATCCACCAACAGGGAGACGAAATGGAC < 41bp 0.451570373408154 0.717749238630309 0.0073425174 0.028296411 prediction 0.435498477260618 Functional Gain - DNASE2B ENSG00000137976 CDS Human protein_coding chr1:84876614 chr1:84876615 synonymous SNV . 0 22 hm5C_associated_SNPs_120747 0 0 0 0 3 DNASE2B chr1:84876682 5'GT 84876682 Upstream 68bp
chr1 84876615 84876615 1 + C A SARC 84876614 + 84876594 84876634 41 AGAAGGCTATGATTATCCACCCACAGGGAGACGAAATGGAC AGAAGGCTATGATTATCCACCAACAGGGAGACGAAATGGAC < 41bp 0.451570373408154 0.717749238630309 0.0073425174 0.028296411 prediction 0.435498477260618 Functional Gain - DNASE2B ENSG00000137976 CDS Human protein_coding chr1:84876614 chr1:84876615 synonymous SNV . 0 22 hm5C_associated_SNPs_120747 0 0 0 0 3 DNASE2B chr1:84876693 5'GT 84876693 Upstream 79bp
chr14 24112384 24112384 1 + C T KIRC 24112383 + 24112363 24112403 41 CCTAAGTGTGAACGTGAAGTCCCCAGCCCTGCTGCTGAGCC CCTAAGTGTGAACGTGAAGTCTCCAGCCCTGCTGCTGAGCC < 41bp 0.599018223994369 0.816761417121041 0.090589434 0.94809175 prediction 0.435486386253344 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24112383 chr14:24112384 synonymous SNV . 0 22 hm5C_associated_SNPs_120749 0 0 1 2 1 DHRS2 chr14:24112361 3'AG 24112361 Downstream 24bp
chr20 35827572 35827572 1 + C T HNSC 35827571 + 35827551 35827591 41 CTTTGGCCTTCCCTTGGCATCCCAAGAAGCACTCAGTGCCC CTTTGGCCTTCCCTTGGCATCTCAAGAAGCACTCAGTGCCC < 41bp 0.621776273403027 0.839510640987116 0.24935028 0.8231533 prediction 0.435468735168178 Functional Gain - RPN2 ENSG00000118705 CDS Human protein_coding chr20:35827571 chr20:35827572 synonymous SNV . 0 22 hm5C_associated_SNPs_120754 0 0 1 0 1 RPN2 chr20:35827628 5'GT 35827628 Upstream 57bp
chr16 89661997 89661997 1 + C T SKCM 89661996 + 89661976 89662016 41 ATCGTACAGTTCGTGCCCTTCCGGGAGCTCAAGAACGTGAG ATCGTACAGTTCGTGCCCTTCTGGGAGCTCAAGAACGTGAG < 41bp 0.589269849511863 0.806999101336233 0.91976184 0.8326112 prediction 0.435458503648742 Functional Gain - CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89661996 chr16:89661997 nonsynonymous SNV 0.966 4 22 hm5C_associated_SNPs_120759 0 0 1 0 1 CPNE7 chr16:89662011 5'GT 89662011 Upstream 15bp
chr15 67818823 67818823 1 + C A UCEC 67818822 + 67818802 67818842 41 AGTCACAGAGACTGTGCATACCAGTTATGGACCCATAACAG AGTCACAGAGACTGTGCATACAAGTTATGGACCCATAACAG < 41bp 0.471131470007008 0.717727982947989 0.03828922 0.02585569 prediction 0.435455965895978 Functional Gain - C15orf61 ENSG00000189227 CDS Human protein_coding chr15:67818822 chr15:67818823 synonymous SNV . 0 22 hm5C_associated_SNPs_120760 0 0 1 0 1 C15orf61 chr15:67818756 3'AG 67818756 Downstream 68bp
chr12 65639998 65639998 1 + C T SKCM 65639997 + 65639977 65640017 41 AGATACCACCATCGCTTTCCCCAGGCTCTCACTTCCAACAC AGATACCACCATCGCTTTCCCTAGGCTCTCACTTCCAACAC < 41bp 0.477160291516077 0.717724145315305 0.46986976 0.14854205 prediction 0.435448290630609 Functional Gain - LEMD3 ENSG00000174106 CDS Human protein_coding chr12:65639997 chr12:65639998 stopgain 0.979 1 22 hm5C_associated_SNPs_120762 0 0 1 0 1 LEMD3 chr12:65639942 3'AG 65639942 Downstream 57bp
chr6 161152867 161152867 1 + C A KIRP 161152866 + 161152846 161152886 41 AGGACTGGGCTGCCCAGGAGCCCCATAGACACAGCATTTTC AGGACTGGGCTGCCCAGGAGCACCATAGACACAGCATTTTC < 41bp 0.607915490689379 0.82563684343888 0.030661613 0.062105805 prediction 0.435442705499003 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161152866 chr6:161152867 nonsynonymous SNV 0.906 3 22 hm5C_associated_SNPs_120764 0 0 0 0 2 PLG chr6:161152777 3'AG 161152777 Downstream 91bp
chr6 161152867 161152867 1 + C A KIRP 161152866 + 161152846 161152886 41 AGGACTGGGCTGCCCAGGAGCCCCATAGACACAGCATTTTC AGGACTGGGCTGCCCAGGAGCACCATAGACACAGCATTTTC < 41bp 0.607915490689379 0.82563684343888 0.030661613 0.062105805 prediction 0.435442705499003 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161152866 chr6:161152867 nonsynonymous SNV 0.906 3 22 hm5C_associated_SNPs_120764 0 0 0 0 2 PLG chr6:161152925 5'GT 161152925 Upstream 59bp
chr9 139250825 139250825 1 + C T rs570436056 139250824 + 139250804 139250844 41 GATGACGGCCTCGCCCCAGACCGAGGAATTCTTCGACCTCA GATGACGGCCTCGCCCCAGACTGAGGAATTCTTCGACCTCA < 41bp 0.568762419913819 0.786480998970651 0.813357 0.29918587 prediction 0.435437158113664 Functional Gain - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139250824 chr9:139250825 synonymous SNV . 0 22 hm5C_associated_SNPs_120766 0 0 0 0 1 GPSM1 chr9:139250794 3'AG 139250794 Downstream 32bp
chr15 45406854 45406854 1 + C T rs4775766 45406853 + 45406833 45406873 41 TTACCCCCAGCCCCGGCATGCCGCAGGCTTCAGCGTTCCAC TTACCCCCAGCCCCGGCATGCTGCAGGCTTCAGCGTTCCAC < 41bp 0.567926205745089 0.785644603459493 0.24371946 0.20939845 prediction 0.435436795428808 Functional Gain - DUOXA2 ENSG00000140274 CDS Human protein_coding chr15:45406853 chr15:45406854 synonymous SNV . 0 22 hm5C_associated_SNPs_120767 0 0 0 0 1 DUOXA2 chr15:45406950 5'GT 45406950 Upstream 97bp
chrX 54836552 54836552 1 + C G STAD 54836548 + 54836528 54836568 41 AGACTGAGGCTGCACCCTCTCAGGCCCCAGCAGATGAACCT AGACTGAGGCTGCACCCTCTCAGGGCCCAGCAGATGAACCT < 41bp 0.660075069829706 0.877792470039123 0.9150535 0.9342009 prediction 0.435434800418835 Functional Gain - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54836548 chrX:54836552 nonsynonymous SNV 0.503 1 25 hm5C_associated_SNPs_120768 0 0 0 0 1 MAGED2 chrX:54836646 5'GT 54836646 Upstream 95bp
chr6 36981398 36981398 1 + C A LUAD 36981397 + 36981377 36981417 41 TCCTGCAGGACAGCTAACCCCCGCATCGGTGACGTGATCCA TCCTGCAGGACAGCTAACCCCAGCATCGGTGACGTGATCCA < 41bp 0.542628444182187 0.760333798854802 0.21607292 0.28646225 prediction 0.435410709345229 Functional Gain - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36981397 chr6:36981398 nonsynonymous SNV 0.433 2 22 hm5C_associated_SNPs_120771 0 0 0 0 1 FGD2 chr6:36981385 3'AG 36981385 Downstream 14bp
chr12 56622893 56622893 1 + C T UCEC 56622892 + 56622872 56622912 41 CCCTCCCACCCACCCAGCACCCGAATCACTCGAAGCCAGCC CCCTCCCACCCACCCAGCACCTGAATCACTCGAAGCCAGCC < 41bp 0.59871032405524 0.816404481911989 0.027969927 0.030421346 prediction 0.435388315713498 Functional Gain - NABP2 ENSG00000139579 CDS Human protein_coding chr12:56622892 chr12:56622893 stopgain 0.994 0 22 hm5C_associated_SNPs_120775 0 0 1 0 1 NABP2 chr12:56622798 3'AG 56622798 Downstream 96bp
chr8 19677964 19677964 1 + T A ESCA 19677960 + 19677940 19677980 41 GTCACGGAACAATGCTTCAACACGTTAGAACGATCAGAAAT GTCACGGAACAATGCTTCAACACGATAGAACGATCAGAAAT < 41bp 0.687113517421311 0.904801322479327 0.05253184 0.048931837 prediction 0.435375610116031 Functional Gain - INTS10 ENSG00000104613 CDS Human protein_coding chr8:19677960 chr8:19677964 nonsynonymous SNV 0.952 3 25 hm5C_associated_SNPs_120778 0 0 1 0 2 INTS10 chr8:19677890 3'AG 19677890 Downstream 75bp
chr8 19677964 19677964 1 + T A ESCA 19677960 + 19677940 19677980 41 GTCACGGAACAATGCTTCAACACGTTAGAACGATCAGAAAT GTCACGGAACAATGCTTCAACACGATAGAACGATCAGAAAT < 41bp 0.687113517421311 0.904801322479327 0.05253184 0.048931837 prediction 0.435375610116031 Functional Gain - INTS10 ENSG00000104613 CDS Human protein_coding chr8:19677960 chr8:19677964 nonsynonymous SNV 0.952 3 25 hm5C_associated_SNPs_120778 0 0 1 0 2 INTS10 chr8:19678029 5'GT 19678029 Upstream 66bp
chr1 236908039 236908039 1 + C T COAD 236908038 + 236908018 236908058 41 GACCTGGCAGCGCACCAGGACCGCGTGGAGCAGATCGCAGC GACCTGGCAGCGCACCAGGACTGCGTGGAGCAGATCGCAGC < 41bp 0.452403659185006 0.717684603898155 0.27090707 0.32177007 prediction 0.43536920779631 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236908038 chr1:236908039 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_120780 1 0 0 0 1 ACTN2 chr1:236908076 5'GT 236908076 Upstream 38bp
chr2 86716534 86716534 1 + C T SKCM 86716533 + 86716513 86716553 41 TCATGGTCTATGTGGGAATTCCCAAAGGACAGTGTGAGCAA TCATGGTCTATGTGGGAATTCTCAAAGGACAGTGTGAGCAA < 41bp 0.445747518191863 0.717683711191694 0.10215083 0.84766084 prediction 0.435367422383387 Functional Gain - KDM3A ENSG00000115548 CDS Human protein_coding chr2:86716533 chr2:86716534 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_120781 0 0 1 0 2 KDM3A chr2:86716441 3'AG 86716441 Downstream 94bp
chr2 86716534 86716534 1 + C T SKCM 86716533 + 86716513 86716553 41 TCATGGTCTATGTGGGAATTCCCAAAGGACAGTGTGAGCAA TCATGGTCTATGTGGGAATTCTCAAAGGACAGTGTGAGCAA < 41bp 0.445747518191863 0.717683711191694 0.10215083 0.84766084 prediction 0.435367422383387 Functional Gain - KDM3A ENSG00000115548 CDS Human protein_coding chr2:86716533 chr2:86716534 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_120781 0 0 1 0 2 KDM3A chr2:86716560 5'GT 86716560 Upstream 27bp
chrX 130217717 130217717 1 + A G UCEC 130217714 + 130217694 130217734 41 TCGTGGCTCCCCAGCTGTATCACACAAGACATTTGGCATTA TCGTGGCTCCCCAGCTGTATCACGCAAGACATTTGGCATTA < 41bp 0.466272391091612 0.717681678898461 0.051599324 0.15518668 prediction 0.435363357796922 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130217714 chrX:130217717 nonsynonymous SNV 0.618 0 24 hm5C_associated_SNPs_120784 0 0 0 0 1 ARHGAP36 chrX:130217708 3'AG 130217708 Downstream 10bp
chr11 60468359 60468359 1 + C T CESC 60468358 + 60468338 60468378 41 ATTCGATGACTTCAGCAGTTCCGGTGGCCAATTCTGTGTTG ATTCGATGACTTCAGCAGTTCTGGTGGCCAATTCTGTGTTG < 41bp 0.516634060431393 0.734315451789015 0.2335383 0.21759257 prediction 0.435362782715244 Functional Gain - MS4A8 ENSG00000166959 CDS Human protein_coding chr11:60468358 chr11:60468359 nonsynonymous SNV 0.021 1 22 hm5C_associated_SNPs_120785 0 0 0 0 1 MS4A8 chr11:60468333 3'AG 60468333 Downstream 27bp
chr1 158325803 158325803 1 + C A ESCA 158325799 + 158325779 158325819 41 CTGACGAGACATGGTATCTCCGAGCAACCCTGGATGTGGCG CTGACGAGACATGGTATCTCCGAGAAACCCTGGATGTGGCG < 41bp 0.699069546640193 0.916749992943281 0.691005 0.34935123 prediction 0.435360892606176 Functional Gain - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325799 chr1:158325803 nonsynonymous SNV 0.163 3 25 hm5C_associated_SNPs_120786 0 0 0 0 1 CD1E chr1:158325895 5'GT 158325895 Upstream 93bp
chr9 135932268 135932268 1 + C T COAD 135932267 + 135932247 135932287 41 GACACCATGTCCCTCATGATCCGGCAGACCATCCGCTCCAA GACACCATGTCCCTCATGATCTGGCAGACCATCCGCTCCAA < 41bp 0.597766847613695 0.815444798387267 0.4048666 0.31729555 prediction 0.435355901547145 Functional Gain - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135932267 chr9:135932268 nonsynonymous SNV 0.860 1 22 hm5C_associated_SNPs_120787 0 0 1 0 1 GTF3C5 chr9:135932295 5'GT 135932295 Upstream 28bp
chr17 78219033 78219033 1 + C G rs373604987 78219032 + 78219012 78219052 41 GGCTCCCTCGTCTCCTCCTACCCGGTCACAGGCAGCTTTGG GGCTCCCTCGTCTCCTCCTACGCGGTCACAGGCAGCTTTGG < 41bp 0.381241308638712 0.717671134110245 0.09736991 0.30246168 prediction 0.43534226822049 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78219032 chr17:78219033 nonsynonymous SNV 0.359 5 22 hm5C_associated_SNPs_120790 0 0 1 0 2 SLC26A11 chr17:78218995 3'AG 78218995 Downstream 39bp
chr17 78219033 78219033 1 + C G rs373604987 78219032 + 78219012 78219052 41 GGCTCCCTCGTCTCCTCCTACCCGGTCACAGGCAGCTTTGG GGCTCCCTCGTCTCCTCCTACGCGGTCACAGGCAGCTTTGG < 41bp 0.381241308638712 0.717671134110245 0.09736991 0.30246168 prediction 0.43534226822049 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78219032 chr17:78219033 nonsynonymous SNV 0.359 5 22 hm5C_associated_SNPs_120790 0 0 1 0 2 SLC26A11 chr17:78219055 5'GT 78219055 Upstream 23bp
chr19 11660189 11660189 1 + C A BLCA 11660185 + 11660165 11660205 41 CAGGGCATGACGGCCTATGGCACCCGGCGCCACCTCTACGA CAGGGCATGACGGCCTATGGCACCAGGCGCCACCTCTACGA < 41bp 0.727015958225377 0.944682780025971 0.18415067 0.26869655 prediction 0.435333643601188 Functional Gain - CNN1 ENSG00000130176 CDS Human protein_coding chr19:11660185 chr19:11660189 synonymous SNV . 0 25 hm5C_associated_SNPs_120792 0 0 0 0 2 CNN1 chr19:11660138 3'AG 11660138 Downstream 52bp
chr19 11660189 11660189 1 + C A BLCA 11660185 + 11660165 11660205 41 CAGGGCATGACGGCCTATGGCACCCGGCGCCACCTCTACGA CAGGGCATGACGGCCTATGGCACCAGGCGCCACCTCTACGA < 41bp 0.727015958225377 0.944682780025971 0.18415067 0.26869655 prediction 0.435333643601188 Functional Gain - CNN1 ENSG00000130176 CDS Human protein_coding chr19:11660185 chr19:11660189 synonymous SNV . 0 25 hm5C_associated_SNPs_120792 0 0 0 0 2 CNN1 chr19:11660284 5'GT 11660284 Upstream 96bp
chr10 88419719 88419719 1 + A G COAD 88419716 + 88419696 88419736 41 TGTGGCAGCGGCAGCGGCTGCAGAGCGAGTGCAAGATGGCC TGTGGCAGCGGCAGCGGCTGCAGGGCGAGTGCAAGATGGCC < 41bp 0.593862986462822 0.811526930057223 0.86256576 0.88798594 prediction 0.435327887188802 Functional Gain - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88419716 chr10:88419719 nonsynonymous SNV 0.850 1 24 hm5C_associated_SNPs_120793 0 0 0 0 2 OPN4 chr10:88419652 3'AG 88419652 Downstream 68bp
chr10 88419719 88419719 1 + A G COAD 88419716 + 88419696 88419736 41 TGTGGCAGCGGCAGCGGCTGCAGAGCGAGTGCAAGATGGCC TGTGGCAGCGGCAGCGGCTGCAGGGCGAGTGCAAGATGGCC < 41bp 0.593862986462822 0.811526930057223 0.86256576 0.88798594 prediction 0.435327887188802 Functional Gain - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88419716 chr10:88419719 nonsynonymous SNV 0.850 1 24 hm5C_associated_SNPs_120793 0 0 0 0 2 OPN4 chr10:88419816 5'GT 88419816 Upstream 98bp
chr6 32610520 32610520 1 + C A ACC 32610519 + 32610499 32610539 41 CCTGCGTTCAGTTGGTGCTTCCAGACACCAAGGGCCATTGT CCTGCGTTCAGTTGGTGCTTCAAGACACCAAGGGCCATTGT < 41bp 0.610690248785224 0.828350308380953 0.31546244 0.31304938 prediction 0.435320119191457 Functional Gain - HLA-DQA1 ENSG00000196735 CDS Human protein_coding chr6:32610519 chr6:32610520 synonymous SNV . 0 22 hm5C_associated_SNPs_120796 0 0 0 1 1 HLA-DQA1 chr6:32610561 5'GT 32610561 Upstream 42bp
chr15 79614407 79614407 1 + C T ESCA 79614406 + 79614386 79614426 41 CGGCTGCGGGAGGCCCAGGACCGGGCCCGAGCAGAAGACCT CGGCTGCGGGAGGCCCAGGACTGGGCCCGAGCAGAAGACCT < 41bp 0.553093533625005 0.770749949509438 0.8828965 0.5766978 prediction 0.435312831768867 Functional Gain - TMED3 ENSG00000166557 CDS Human protein_coding chr15:79614406 chr15:79614407 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_120797 0 0 1 0 1 TMED3 chr15:79614320 3'AG 79614320 Downstream 88bp
chr3 102157378 102157378 1 + C T UCEC 102157377 + 102157357 102157397 41 TTCTAACAATTAGAGTGCTTCCGGGGTCTGCTCAGTTCAAC TTCTAACAATTAGAGTGCTTCTGGGGTCTGCTCAGTTCAAC < 41bp 0.567956405008479 0.785612006769872 0.89343286 0.36443025 prediction 0.435311203522786 Functional Gain - ZPLD1 ENSG00000170044 CDS Human protein_coding chr3:102157377 chr3:102157378 nonsynonymous SNV 0.862 0 22 hm5C_associated_SNPs_120798 0 0 0 0 2 ZPLD1 chr3:102157324 3'AG 102157324 Downstream 55bp
chr3 102157378 102157378 1 + C T UCEC 102157377 + 102157357 102157397 41 TTCTAACAATTAGAGTGCTTCCGGGGTCTGCTCAGTTCAAC TTCTAACAATTAGAGTGCTTCTGGGGTCTGCTCAGTTCAAC < 41bp 0.567956405008479 0.785612006769872 0.89343286 0.36443025 prediction 0.435311203522786 Functional Gain - ZPLD1 ENSG00000170044 CDS Human protein_coding chr3:102157377 chr3:102157378 nonsynonymous SNV 0.862 0 22 hm5C_associated_SNPs_120798 0 0 0 0 2 ZPLD1 chr3:102157437 5'GT 102157437 Upstream 60bp
chrX 48542775 48542775 1 + C T UCEC 48542774 + 48542754 48542794 41 TGTGCTTCGTGAAGGATAACCCCCAGAAGTCCTACTTCATC TGTGCTTCGTGAAGGATAACCTCCAGAAGTCCTACTTCATC < 41bp 0.625356500395335 0.843009719213937 0.089650035 0.9573786 prediction 0.435306437637203 Functional Gain - WAS ENSG00000015285 CDS Human protein_coding chrX:48542774 chrX:48542775 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_120799 0 0 0 0 1 WAS chrX:48542812 5'GT 48542812 Upstream 38bp
chr19 39870622 39870622 1 + A G HNSC 39870619 + 39870599 39870639 41 ATTCTAGGCTTTCACGGAGACGCAGAAGAAACGGCTGCTAT ATTCTAGGCTTTCACGGAGACGCGGAAGAAACGGCTGCTAT < 41bp 0.55582862054044 0.773481102167508 0.33978897 0.49668545 prediction 0.435304963254137 Functional Gain - SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39870619 chr19:39870622 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_120800 0 0 1 0 1 SAMD4B chr19:39870606 3'AG 39870606 Downstream 17bp
chr1 24078940 24078940 1 + C G rs550252 24078936 + 24078916 24078956 41 TGTTGCCAGACCTCCCGTTACCCGCGATACAGGCCAATTAC TGTTGCCAGACCTCCCGTTACCCGGGATACAGGCCAATTAC < 41bp 0.423038415774973 0.717651473182347 0.4422992 0.9039625 prediction 0.435302946364695 Functional Gain - ELOA ENSG00000011007 CDS Human protein_coding chr1:24078936 chr1:24078940 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_120801 0 0 1 0 2 ELOA chr1:24078897 3'AG 24078897 Downstream 44bp
chr1 24078940 24078940 1 + C G rs550252 24078936 + 24078916 24078956 41 TGTTGCCAGACCTCCCGTTACCCGCGATACAGGCCAATTAC TGTTGCCAGACCTCCCGTTACCCGGGATACAGGCCAATTAC < 41bp 0.423038415774973 0.717651473182347 0.4422992 0.9039625 prediction 0.435302946364695 Functional Gain - ELOA ENSG00000011007 CDS Human protein_coding chr1:24078936 chr1:24078940 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_120801 0 0 1 0 2 ELOA chr1:24079008 5'GT 24079008 Upstream 69bp
chr9 119324318 119324318 1 + A G rs62574427 119324315 + 119324295 119324335 41 ATCAAAACCAGGGTGGCTGCCACAGGCGATGAAGCTAGAGT ATCAAAACCAGGGTGGCTGCCACGGGCGATGAAGCTAGAGT < 41bp 0.513181167147534 0.730830352347454 0.897104 0.8164627 prediction 0.435298370399839 Functional Gain - ASTN2-AS1 ENSG00000229105 ncRNA_exonic Human antisense chr9:119324315 chr9:119324318 . . 0 24 hm5C_associated_SNPs_120802 0 0 0 0 1 ASTN2-AS1 chr9:119324278 3'AG 119324278 Downstream 41bp
chr1 55277794 55277794 1 + C T STAD 55277793 + 55277773 55277813 41 GTGGCACGATCCGTCGGCACCCGCGGCCCCTATGACACTTT GTGGCACGATCCGTCGGCACCTGCGGCCCCTATGACACTTT < 41bp 0.46175646946415 0.717645329679824 0.27243364 0.25188652 prediction 0.435290659359648 Functional Gain - LEXM ENSG00000162398 CDS Human protein_coding chr1:55277793 chr1:55277794 nonsynonymous SNV 0.007 2 22 hm5C_associated_SNPs_120807 0 0 0 0 2 LEXM chr1:55277719 3'AG 55277719 Downstream 76bp
chr1 55277794 55277794 1 + C T STAD 55277793 + 55277773 55277813 41 GTGGCACGATCCGTCGGCACCCGCGGCCCCTATGACACTTT GTGGCACGATCCGTCGGCACCTGCGGCCCCTATGACACTTT < 41bp 0.46175646946415 0.717645329679824 0.27243364 0.25188652 prediction 0.435290659359648 Functional Gain - LEXM ENSG00000162398 CDS Human protein_coding chr1:55277793 chr1:55277794 nonsynonymous SNV 0.007 2 22 hm5C_associated_SNPs_120807 0 0 0 0 2 LEXM chr1:55277862 5'GT 55277862 Upstream 69bp
chr1 17699683 17699683 1 + C T rs199621634 17699682 + 17699662 17699702 41 CCTGTCTGATCCCACGTACGCCACAGTGAAGATGACATCGC CCTGTCTGATCCCACGTACGCTACAGTGAAGATGACATCGC < 41bp 0.551620224720054 0.769258673191332 0.1998977 0.14774239 prediction 0.435276896942557 Functional Gain - PADI6 ENSG00000256049 ncRNA_exonic Human other chr1:17699682 chr1:17699683 . . 0 22 hm5C_associated_SNPs_120812 0 0 0 0 1 PADI6 chr1:17699728 5'GT 17699728 Upstream 46bp
chrX 68058492 68058492 1 + C T UCEC 68058491 + 68058471 68058511 41 GGAAGGGCTTGGTGATCTATCCGAAAATTGGAGACAAGCTG GGAAGGGCTTGGTGATCTATCTGAAAATTGGAGACAAGCTG < 41bp 0.576040061303522 0.793678123419304 0.3320901 0.118323475 prediction 0.435276124231564 Functional Gain - EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68058491 chrX:68058492 nonsynonymous SNV 0.991 5 22 hm5C_associated_SNPs_120813 2 0 0 0 1 EFNB1 chrX:68058460 3'AG 68058460 Downstream 33bp
chr1 201952182 201952182 1 + T G rs557054580 201952179 + 201952159 201952199 41 TGTGCGTGTCCTTCCCGCAGCCCTGCCGCGCCGCCGAGCGC TGTGCGTGTCCTTCCCGCAGCCCGGCCGCGCCGCCGAGCGC < 41bp 0.314846803929624 0.71763711919564 0.111302346 0.15676957 prediction 0.43527423839128 Functional Gain - RNPEP ENSG00000176393 CDS Human protein_coding chr1:201952179 chr1:201952182 nonsynonymous SNV 0.391 0 24 hm5C_associated_SNPs_120814 0 0 1 0 1 RNPEP chr1:201952241 5'GT 201952241 Upstream 60bp
chr11 67176971 67176971 1 + C T READ 67176970 + 67176950 67176990 41 TCCGCGCCGGGACCCCCGCCCCGGCCACAGGTCCGCCTCGC TCCGCGCCGGGACCCCCGCCCTGGCCACAGGTCCGCCTCGC < 41bp 0.517577751916832 0.735214487344926 0.682938 0.29271427 prediction 0.435273470856188 Functional Gain - TBC1D10C ENSG00000175463 CDS Human protein_coding chr11:67176970 chr11:67176971 nonsynonymous SNV 0.026 2 22 hm5C_associated_SNPs_120815 0 0 0 0 1 TBC1D10C chr11:67176878 3'AG 67176878 Downstream 94bp
chr2 198415083 198415083 1 + T C UCEC 198415081 + 198415061 198415101 41 TATTTTCACATGCTTATTTTCATCATCGGCAGATATTTGAT TATTTTCACATGCTTATTTTCACCATCGGCAGATATTTGAT < 41bp 0.421456741746718 0.717621997444764 0.047946453 0.036322385 prediction 0.435243994889527 Functional Gain - HSPE1-MOB4;MOB4 ENSG00000115540;ENSG00000270757 CDS Human other chr2:198415081 chr2:198415083 synonymous SNV . 0 23 hm5C_associated_SNPs_120818 0 0 1 0 1 HSPE1-MOB4;MOB4 chr2:198415110 5'GT 198415110 Upstream 28bp
chr1 171759754 171759754 1 + T G COAD 171759752 + 171759732 171759772 41 CTGAGAAACCCAGAGCTACTCCTAGGTGAGAGAGATGCCAC CTGAGAAACCCAGAGCTACTCCGAGGTGAGAGAGATGCCAC < 41bp 0.365216684884507 0.717621553129724 0.72622883 0.9229812 prediction 0.435243106259448 Functional Gain - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171759752 chr1:171759754 nonsynonymous SNV 0.238 1 23 hm5C_associated_SNPs_120819 0 0 1 0 1 METTL13 chr1:171759756 5'GT 171759756 Upstream 3bp
chr22 45944612 45944612 1 + C T UCEC 45944611 + 45944591 45944631 41 TACAGGCTGGCCCCCAATGGCCGCAACTGCCAAGGTGAGCA TACAGGCTGGCCCCCAATGGCTGCAACTGCCAAGGTGAGCA < 41bp 0.609380560300749 0.826999739558489 0.37405008 0.48321697 prediction 0.435238358515478 Functional Gain - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45944611 chr22:45944612 nonsynonymous SNV 0.962 5 22 hm5C_associated_SNPs_120822 0 0 1 0 1 FBLN1 chr22:45944624 5'GT 45944624 Upstream 13bp
chr4 74274451 74274451 1 + C T SKCM 74274450 + 74274430 74274470 41 AGATGACAACCCAAACCTCCCCCGATTGGTGAGACCAGAGG AGATGACAACCCAAACCTCCCTCGATTGGTGAGACCAGAGG < 41bp 0.600932650141192 0.818546494010111 0.014340401 0.3726833 prediction 0.435227687737837 Functional Gain - ALB ENSG00000163631 CDS Human protein_coding chr4:74274450 chr4:74274451 synonymous SNV . 0 22 hm5C_associated_SNPs_120823 0 0 1 0 1 ALB chr4:74274522 5'GT 74274522 Upstream 72bp
chr10 29599937 29599937 1 + T C rs201341230 29599935 + 29599915 29599955 41 TCAGGCAAGGCTGGAAGAAACATTGTGAGGGCAGAGACCTG TCAGGCAAGGCTGGAAGAAACACTGTGAGGGCAGAGACCTG < 41bp 0.464453595412639 0.717607756260822 0.111607075 0.15238842 prediction 0.435215512521643 Functional Gain - LYZL1 ENSG00000120563 CDS Human protein_coding chr10:29599935 chr10:29599937 synonymous SNV . 0 23 hm5C_associated_SNPs_120827 0 0 0 0 1 LYZL1 chr10:29599919 3'AG 29599919 Downstream 19bp
chr12 68042946 68042946 1 + C G rs200090077 68042942 + 68042922 68042962 41 CAGGAAACCTTCGGCCGCCGCTCCCGCCGCCTACCCGACCG CAGGAAACCTTCGGCCGCCGCTCCGGCCGCCTACCCGACCG < 41bp 0.64340646942401 0.861013759891475 0.19370809 0.23489806 prediction 0.43521458093493 Functional Gain - DYRK2 ENSG00000127334 CDS Human protein_coding chr12:68042942 chr12:68042946 synonymous SNV . 0 25 hm5C_associated_SNPs_120829 0 0 1 0 1 DYRK2 chr12:68042962 5'GT 68042962 Upstream 17bp
chr1 28282258 28282258 1 + C T COAD 28282257 + 28282237 28282277 41 ACGCAAAACAAGGCATGGTTCCGGGAGGGCTTCAATGAAAA ACGCAAAACAAGGCATGGTTCTGGGAGGGCTTCAATGAAAA < 41bp 0.594603605333979 0.812194033837881 0.84739614 0.3566385 prediction 0.435180857007804 Functional Gain - SMPDL3B ENSG00000130768 CDS Human protein_coding chr1:28282257 chr1:28282258 nonsynonymous SNV 0.282 5 22 hm5C_associated_SNPs_120835 0 0 0 0 1 SMPDL3B chr1:28282195 3'AG 28282195 Downstream 64bp
chr17 26820746 26820746 1 + C T LUAD 26820745 + 26820725 26820765 41 CTGGTGCTGCTCTGGTTCACCCGGGAGCCGGGCTTTTTTCT CTGGTGCTGCTCTGGTTCACCTGGGAGCCGGGCTTTTTTCT < 41bp 0.580004192458422 0.797592436071653 0.8393246 0.66511387 prediction 0.435176487226462 Functional Gain - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26820745 chr17:26820746 nonsynonymous SNV 0.950 4 22 hm5C_associated_SNPs_120836 0 0 0 0 1 SLC13A2 chr17:26820807 5'GT 26820807 Upstream 62bp
chr11 551768 551768 1 + C A rs143185074 551767 + 551747 551787 41 TGGTCCGTGGGGGCCCCCTGCCTGAAGGCCTGCTTTCTGAG TGGTCCGTGGGGGCCCCCTGCATGAAGGCCTGCTTTCTGAG < 41bp 0.451770692319086 0.717573815254183 0.10597199 0.35876054 prediction 0.435147630508365 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:551767 chr11:551768 nonsynonymous SNV 0.015 1 22 hm5C_associated_SNPs_120843 0 0 0 0 1 LRRC56 chr11:551827 5'GT 551827 Upstream 60bp
chr10 125426587 125426587 1 + C T COAD 125426586 + 125426566 125426606 41 GTGCTGCTGGTGGACCTGCACCCCAGGTGAGCCGAGCGCAG GTGCTGCTGGTGGACCTGCACTCCAGGTGAGCCGAGCGCAG < 41bp 0.588559468599627 0.806124993158994 0.20171607 0.9110146 prediction 0.435131049118735 Functional Gain - GPR26 ENSG00000154478 CDS Human protein_coding chr10:125426586 chr10:125426587 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_120845 0 0 0 0 1 GPR26 chr10:125426591 5'GT 125426591 Upstream 5bp
chr5 170232774 170232774 1 + T C rs190950426 170232771 + 170232751 170232791 41 CTGGCTGAGAGGGAACGACTCTGTGCGTGGACTGGAACACC CTGGCTGAGAGGGAACGACTCTGCGCGTGGACTGGAACACC < 41bp 0.539288940155814 0.756834774178071 0.17104924 0.39353845 prediction 0.435091668044514 Functional Gain - GABRP ENSG00000094755 CDS Human protein_coding chr5:170232771 chr5:170232774 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_120851 0 0 0 0 2 GABRP chr5:170232720 3'AG 170232720 Downstream 55bp
chr5 170232774 170232774 1 + T C rs190950426 170232771 + 170232751 170232791 41 CTGGCTGAGAGGGAACGACTCTGTGCGTGGACTGGAACACC CTGGCTGAGAGGGAACGACTCTGCGCGTGGACTGGAACACC < 41bp 0.539288940155814 0.756834774178071 0.17104924 0.39353845 prediction 0.435091668044514 Functional Gain - GABRP ENSG00000094755 CDS Human protein_coding chr5:170232771 chr5:170232774 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_120851 0 0 0 0 2 GABRP chr5:170232857 5'GT 170232857 Upstream 84bp
chr12 111885191 111885191 1 + C G OV 111885187 + 111885167 111885207 41 GCCAGAAGACGGACCATTTCCTGTCCTGCTACCCCTGGTTC GCCAGAAGACGGACCATTTCCTGTGCTGCTACCCCTGGTTC < 41bp 0.414299470509324 0.717540735958255 0.108329386 0.20129839 prediction 0.43508147191651 Functional Gain - SH2B3 ENSG00000111252 CDS Human protein_coding chr12:111885187 chr12:111885191 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_120852 0 0 1 0 1 SH2B3 chr12:111885134 3'AG 111885134 Downstream 58bp
chr17 7346432 7346432 1 + C A rs201355356 7346431 + 7346411 7346451 41 GCCTTCTCTCCACAGTGTCCCCGAGGCCTCCCCTTCCAGTC GCCTTCTCTCCACAGTGTCCCAGAGGCCTCCCCTTCCAGTC < 41bp 0.455436602925914 0.717536145057585 0.17028522 0.942495 prediction 0.43507229011517 Functional Gain - FGF11 ENSG00000161958 CDS Human protein_coding chr17:7346431 chr17:7346432 synonymous SNV . 0 22 hm5C_associated_SNPs_120853 0 0 0 0 1 FGF11 chr17:7346395 3'AG 7346395 Downstream 38bp
chr12 72167766 72167766 1 + A G STAD 72167763 + 72167743 72167783 41 AAAACTGGGTCAAAGAATTACGGAAAATGTTGGGAAATGAA AAAACTGGGTCAAAGAATTACGGGAAATGTTGGGAAATGAA < 41bp 0.500179733206073 0.717711784589973 0.25795877 0.39369422 prediction 0.435064102767801 Functional Gain - RAB21 ENSG00000080371 CDS Human protein_coding chr12:72167763 chr12:72167766 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_120854 0 0 1 0 2 RAB21 chr12:72167739 3'AG 72167739 Downstream 28bp
chr12 72167766 72167766 1 + A G STAD 72167763 + 72167743 72167783 41 AAAACTGGGTCAAAGAATTACGGAAAATGTTGGGAAATGAA AAAACTGGGTCAAAGAATTACGGGAAATGTTGGGAAATGAA < 41bp 0.500179733206073 0.717711784589973 0.25795877 0.39369422 prediction 0.435064102767801 Functional Gain - RAB21 ENSG00000080371 CDS Human protein_coding chr12:72167763 chr12:72167766 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_120854 0 0 1 0 2 RAB21 chr12:72167802 5'GT 72167802 Upstream 37bp
chr16 81942171 81942171 1 + C G HNSC 81942170 + 81942150 81942190 41 GTTCGGGAGAGCGAGACCTTCCCCAATGACTACACCCTGTC GTTCGGGAGAGCGAGACCTTCGCCAATGACTACACCCTGTC < 41bp 0.674864306296853 0.892386765524681 0.109241456 0.37230462 prediction 0.435044918455657 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81942170 chr16:81942171 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_120864 0 0 0 0 1 PLCG2 chr16:81942196 5'GT 81942196 Upstream 26bp
chrX 36117965 36117965 1 + C A LUSC 36117961 + 36117941 36117981 41 AATTTGAAGCCTGGAGTAAACGGGCATGGACAGATGTATTT AATTTGAAGCCTGGAGTAAACGGGAATGGACAGATGTATTT < 41bp 0.71271184431592 0.930228439072462 0.34573263 0.44998857 prediction 0.435033189513084 Functional Gain - CFAP47 ENSG00000176034 CDS Human other chrX:36117961 chrX:36117965 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_120867 0 0 0 0 2 CFAP47 chrX:36117868 3'AG 36117868 Downstream 98bp
chrX 36117965 36117965 1 + C A LUSC 36117961 + 36117941 36117981 41 AATTTGAAGCCTGGAGTAAACGGGCATGGACAGATGTATTT AATTTGAAGCCTGGAGTAAACGGGAATGGACAGATGTATTT < 41bp 0.71271184431592 0.930228439072462 0.34573263 0.44998857 prediction 0.435033189513084 Functional Gain - CFAP47 ENSG00000176034 CDS Human other chrX:36117961 chrX:36117965 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_120867 0 0 0 0 2 CFAP47 chrX:36117996 5'GT 36117996 Upstream 32bp
chr19 57743956 57743956 1 + C T SKCM 57743955 + 57743935 57743975 41 AACTATTTCCATGATGCACGCCGGGTGTACCTGATTCTGGA AACTATTTCCATGATGCACGCTGGGTGTACCTGATTCTGGA < 41bp 0.580521717532048 0.798034513556809 0.35439694 0.15866345 prediction 0.435025592049521 Functional Gain - AURKC ENSG00000105146 CDS Human protein_coding chr19:57743955 chr19:57743956 nonsynonymous SNV 0.001 4 22 hm5C_associated_SNPs_120868 0 0 1 0 2 AURKC chr19:57743910 3'AG 57743910 Downstream 47bp
chr19 57743956 57743956 1 + C T SKCM 57743955 + 57743935 57743975 41 AACTATTTCCATGATGCACGCCGGGTGTACCTGATTCTGGA AACTATTTCCATGATGCACGCTGGGTGTACCTGATTCTGGA < 41bp 0.580521717532048 0.798034513556809 0.35439694 0.15866345 prediction 0.435025592049521 Functional Gain - AURKC ENSG00000105146 CDS Human protein_coding chr19:57743955 chr19:57743956 nonsynonymous SNV 0.001 4 22 hm5C_associated_SNPs_120868 0 0 1 0 2 AURKC chr19:57744048 5'GT 57744048 Upstream 93bp
chr7 150761667 150761667 1 + C T SKCM 150761666 + 150761646 150761686 41 CACTGTCCACCCACCTGCCTCCGGATGCACGCCGCCGCAAG CACTGTCCACCCACCTGCCTCTGGATGCACGCCGCCGCAAG < 41bp 0.601186087724353 0.818697023762809 0.75424826 0.23283833 prediction 0.435021872076911 Functional Gain - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150761666 chr7:150761667 nonsynonymous SNV 0.975 1 22 hm5C_associated_SNPs_120869 0 0 1 0 1 SLC4A2 chr7:150761613 3'AG 150761613 Downstream 55bp
chr11 117163862 117163862 1 - A G COAD 117163865 - 117163845 117163885 41 ACTCGCTGTACACAGGCAGTCTCTGGTATACACCCATCCGG ACTCGCTGTACACAGGCAGTCTCCGGTATACACCCATCCGG < 41bp 0.484968092267867 0.717503627240726 0.15646964 0.13681251 prediction 0.435007254481451 Functional Gain - BACE1 ENSG00000186318 CDS Human protein_coding chr11:117163865 chr11:117163862 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_120870 0 0 0 0 2 BACE1 chr11:117163770 5'GT 117163770 Upstream 93bp
chr11 117163862 117163862 1 - A G COAD 117163865 - 117163845 117163885 41 ACTCGCTGTACACAGGCAGTCTCTGGTATACACCCATCCGG ACTCGCTGTACACAGGCAGTCTCCGGTATACACCCATCCGG < 41bp 0.484968092267867 0.717503627240726 0.15646964 0.13681251 prediction 0.435007254481451 Functional Gain - BACE1 ENSG00000186318 CDS Human protein_coding chr11:117163865 chr11:117163862 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_120870 0 0 0 0 2 BACE1 chr11:117163904 3'AG 117163904 Downstream 43bp
chr2 176988730 176988730 1 + C A UCEC 176988729 + 176988709 176988749 41 CGCTGTCCCTACACCAAATACCAGACGCTTGAGCTGGAGAA CGCTGTCCCTACACCAAATACAAGACGCTTGAGCTGGAGAA < 41bp 0.461807817117808 0.717500258457083 0.36670214 0.713514 prediction 0.435000516914166 Functional Gain - HOXD9 ENSG00000128709 CDS Human protein_coding chr2:176988729 chr2:176988730 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_120871 0 0 1 0 1 HOXD9 chr2:176988662 3'AG 176988662 Downstream 69bp
chr2 113670654 113670654 1 + C T ESCA 113670653 + 113670633 113670673 41 AGGACTGGGAAAAAGATGAACCCCAGTGCTGCTTAGAAGGT AGGACTGGGAAAAAGATGAACTCCAGTGCTGCTTAGAAGGT < 41bp 0.573562467048369 0.791061107568121 0.120060295 0.92554593 prediction 0.434997281039504 Functional Gain - IL37 ENSG00000125571 CDS Human protein_coding chr2:113670653 chr2:113670654 nonsynonymous SNV 0.112 1 22 hm5C_associated_SNPs_120873 0 0 0 0 1 IL37 chr2:113670671 5'GT 113670671 Upstream 18bp
chr4 70155453 70155453 1 + C A LUAD 70155452 + 70155432 70155472 41 CTCGGCTGTATAAGTGGATACCCCAGAATGACCTTCTAGGT CTCGGCTGTATAAGTGGATACACCAGAATGACCTTCTAGGT < 41bp 0.463557816818147 0.717490189109746 0.045593172 0.06645614 prediction 0.434980378219492 Functional Gain - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70155452 chr4:70155453 nonsynonymous SNV 0.678 4 22 hm5C_associated_SNPs_120877 0 0 0 0 2 UGT2B28 chr4:70155383 3'AG 70155383 Downstream 71bp
chr4 70155453 70155453 1 + C A LUAD 70155452 + 70155432 70155472 41 CTCGGCTGTATAAGTGGATACCCCAGAATGACCTTCTAGGT CTCGGCTGTATAAGTGGATACACCAGAATGACCTTCTAGGT < 41bp 0.463557816818147 0.717490189109746 0.045593172 0.06645614 prediction 0.434980378219492 Functional Gain - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70155452 chr4:70155453 nonsynonymous SNV 0.678 4 22 hm5C_associated_SNPs_120877 0 0 0 0 2 UGT2B28 chr4:70155470 5'GT 70155470 Upstream 18bp
chr8 145066086 145066086 1 + C A OV 145066082 + 145066062 145066102 41 CCTTGCAGCTGTCGGTGACCCTGTCCACGGTGTCTGTGTTC CCTTGCAGCTGTCGGTGACCCTGTACACGGTGTCTGTGTTC < 41bp 0.291451008415166 0.717479536675784 0.11875835 0.11501822 prediction 0.434959073351568 Functional Gain - GRINA ENSG00000178719 CDS Human protein_coding chr8:145066082 chr8:145066086 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_120883 0 0 1 0 1 GRINA chr8:145066046 3'AG 145066046 Downstream 41bp
chr12 123333379 123333379 1 + C A PRAD 123333378 + 123333358 123333398 41 CAGCGGTACCGCAGCAACATCCGGGAGATTGGAGACCTGTG CAGCGGTACCGCAGCAACATCAGGGAGATTGGAGACCTGTG < 41bp 0.440488630819964 0.717477808744433 0.89547527 0.90910816 prediction 0.434955617488866 Functional Gain - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123333378 chr12:123333379 synonymous SNV . 0 22 hm5C_associated_SNPs_120884 0 0 1 0 2 HIP1R chr12:123333343 3'AG 123333343 Downstream 37bp
chr12 123333379 123333379 1 + C A PRAD 123333378 + 123333358 123333398 41 CAGCGGTACCGCAGCAACATCCGGGAGATTGGAGACCTGTG CAGCGGTACCGCAGCAACATCAGGGAGATTGGAGACCTGTG < 41bp 0.440488630819964 0.717477808744433 0.89547527 0.90910816 prediction 0.434955617488866 Functional Gain - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123333378 chr12:123333379 synonymous SNV . 0 22 hm5C_associated_SNPs_120884 0 0 1 0 2 HIP1R chr12:123333399 5'GT 123333399 Upstream 21bp
chr20 47895198 47895198 1 + C G rs479473 47895197 + 47895177 47895217 41 TTCTTTCGCGTCTGCGGTGCCCGGAGTGTGGTACTTCTCCT TTCTTTCGCGTCTGCGGTGCCGGGAGTGTGGTACTTCTCCT < 41bp 0.654682659149083 0.872148277500162 0.828518 0.90267456 prediction 0.434931236702159 Functional Gain - ZFAS1 ENSG00000177410 ncRNA_exonic Human antisense chr20:47895197 chr20:47895198 . . 0 22 hm5C_associated_SNPs_120887 0 0 1 0 2 ZFAS1 chr20:47895253 5'GT 47895253 Upstream 56bp
chr20 47895198 47895198 1 + C G rs479473 47895197 + 47895177 47895217 41 TTCTTTCGCGTCTGCGGTGCCCGGAGTGTGGTACTTCTCCT TTCTTTCGCGTCTGCGGTGCCGGGAGTGTGGTACTTCTCCT < 41bp 0.654682659149083 0.872148277500162 0.828518 0.90267456 prediction 0.434931236702159 Functional Gain - ZFAS1 ENSG00000177410 ncRNA_exonic Human antisense chr20:47895197 chr20:47895198 . . 0 22 hm5C_associated_SNPs_120887 0 0 1 0 2 ZFAS1 chr20:47895275 5'GT 47895275 Upstream 78bp
chr2 114356271 114356271 1 + C T UCEC 114356270 + 114356250 114356290 41 CCATCCCTCCTCTGCCGCCACCGCAGCAGCCACAGGCAGAG CCATCCCTCCTCTGCCGCCACTGCAGCAGCCACAGGCAGAG < 41bp 0.541591696549245 0.759056244257252 0.10024205 0.106128186 prediction 0.434929095416014 Functional Gain - WASH2P ENSG00000146556 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:114356270 chr2:114356271 . . 0 22 hm5C_associated_SNPs_120888 0 0 1 0 1 WASH2P chr2:114356184 3'AG 114356184 Downstream 88bp
chr16 28602125 28602125 1 + C T SKCM 28602124 + 28602104 28602144 41 CTGAGCCGGCGCCGTGTCATCCCGCTGCCCCAGTGGAAGGC CTGAGCCGGCGCCGTGTCATCTCGCTGCCCCAGTGGAAGGC < 41bp 0.617968187539318 0.835430968721019 0.3560291 0.4355196 prediction 0.434925562363403 Functional Gain - SGF29 ENSG00000176476 CDS Human protein_coding chr16:28602124 chr16:28602125 nonsynonymous SNV 0.953 4 22 hm5C_associated_SNPs_120889 0 0 1 0 1 SGF29 chr16:28602094 3'AG 28602094 Downstream 32bp
chr2 201527656 201527656 1 + C T UCEC 201527655 + 201527635 201527675 41 TGTTTATGGAGCTGCCTGTTCCGAGGTTGAAATAGACTGCC TGTTTATGGAGCTGCCTGTTCTGAGGTTGAAATAGACTGCC < 41bp 0.469610191959525 0.717461907521138 0.92269516 0.5679238 prediction 0.434923815042275 Functional Gain - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201527655 chr2:201527656 synonymous SNV . 0 22 hm5C_associated_SNPs_120890 0 0 0 0 2 AOX1 chr2:201527578 3'AG 201527578 Downstream 79bp
chr2 201527656 201527656 1 + C T UCEC 201527655 + 201527635 201527675 41 TGTTTATGGAGCTGCCTGTTCCGAGGTTGAAATAGACTGCC TGTTTATGGAGCTGCCTGTTCTGAGGTTGAAATAGACTGCC < 41bp 0.469610191959525 0.717461907521138 0.92269516 0.5679238 prediction 0.434923815042275 Functional Gain - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201527655 chr2:201527656 synonymous SNV . 0 22 hm5C_associated_SNPs_120890 0 0 0 0 2 AOX1 chr2:201527692 5'GT 201527692 Upstream 37bp
chr12 123014649 123014649 1 + C T OV 123014648 + 123014628 123014668 41 GCTGCTAACAAATGATGATACCGGAAGTGGGTACCTGAGTG GCTGCTAACAAATGATGATACTGGAAGTGGGTACCTGAGTG < 41bp 0.542360782847177 0.75981727717595 0.6565052 0.4100942 prediction 0.434912988657546 Functional Gain - KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123014648 chr12:123014649 synonymous SNV . 0 22 hm5C_associated_SNPs_120894 0 0 1 0 2 KNTC1 chr12:123014569 3'AG 123014569 Downstream 81bp
chr12 123014649 123014649 1 + C T OV 123014648 + 123014628 123014668 41 GCTGCTAACAAATGATGATACCGGAAGTGGGTACCTGAGTG GCTGCTAACAAATGATGATACTGGAAGTGGGTACCTGAGTG < 41bp 0.542360782847177 0.75981727717595 0.6565052 0.4100942 prediction 0.434912988657546 Functional Gain - KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123014648 chr12:123014649 synonymous SNV . 0 22 hm5C_associated_SNPs_120894 0 0 1 0 2 KNTC1 chr12:123014739 5'GT 123014739 Upstream 91bp
chr7 39491208 39491208 1 + C A GBM 39491204 + 39491184 39491224 41 TTCTGCACCTGGCTCACAGCCAAGCATCCATGTCTCAAAGT TTCTGCACCTGGCTCACAGCCAAGAATCCATGTCTCAAAGT < 41bp 0.328335387348734 0.717453664319073 0.14466608 0.58668345 prediction 0.434907328638147 Functional Gain - POU6F2 ENSG00000106536 CDS Human protein_coding chr7:39491204 chr7:39491208 nonsynonymous SNV 0.973 2 25 hm5C_associated_SNPs_120895 0 0 0 0 2 POU6F2 chr7:39491132 3'AG 39491132 Downstream 77bp
chr7 39491208 39491208 1 + C A GBM 39491204 + 39491184 39491224 41 TTCTGCACCTGGCTCACAGCCAAGCATCCATGTCTCAAAGT TTCTGCACCTGGCTCACAGCCAAGAATCCATGTCTCAAAGT < 41bp 0.328335387348734 0.717453664319073 0.14466608 0.58668345 prediction 0.434907328638147 Functional Gain - POU6F2 ENSG00000106536 CDS Human protein_coding chr7:39491204 chr7:39491208 nonsynonymous SNV 0.973 2 25 hm5C_associated_SNPs_120895 0 0 0 0 2 POU6F2 chr7:39491300 5'GT 39491300 Upstream 93bp
chr2 103130594 103130594 1 + A G rs200327384 103130591 + 103130571 103130611 41 TACTTACGGAAAATCCTCATCAGAAAGAACCTACCCAAATC TACTTACGGAAAATCCTCATCAGGAAGAACCTACCCAAATC < 41bp 0.521116545128132 0.738560524265582 0.22839302 0.785919 prediction 0.4348879582749 Functional Gain - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103130591 chr2:103130594 synonymous SNV . 0 24 hm5C_associated_SNPs_120897 0 0 0 0 1 SLC9A4 chr2:103130549 3'AG 103130549 Downstream 46bp
chr1 45115339 45115339 1 + C T GBM 45115338 + 45115318 45115358 41 CCTTCCTTTTTACAGAATCACCGAAGATTCAGCTGTGACCA CCTTCCTTTTTACAGAATCACTGAAGATTCAGCTGTGACCA < 41bp 0.462883579959653 0.717441454005005 0.018927723 0.045322508 prediction 0.43488290801001 Functional Gain - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45115338 chr1:45115339 synonymous SNV . 0 22 hm5C_associated_SNPs_120898 0 0 1 0 1 RNF220 chr1:45115333 3'AG 45115333 Downstream 7bp
chr19 2810711 2810711 1 + C T UCEC 2810710 + 2810690 2810730 41 CACGCAGACGGACGCAGACCCCGCCGAGGAGTATGCGCGGC CACGCAGACGGACGCAGACCCTGCCGAGGAGTATGCGCGGC < 41bp 0.465376970641563 0.717440329545967 0.20525843 0.15901741 prediction 0.434880659091935 Functional Gain - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2810710 chr19:2810711 synonymous SNV . 0 22 hm5C_associated_SNPs_120900 0 0 1 0 2 THOP1 chr19:2810638 3'AG 2810638 Downstream 74bp
chr19 2810711 2810711 1 + C T UCEC 2810710 + 2810690 2810730 41 CACGCAGACGGACGCAGACCCCGCCGAGGAGTATGCGCGGC CACGCAGACGGACGCAGACCCTGCCGAGGAGTATGCGCGGC < 41bp 0.465376970641563 0.717440329545967 0.20525843 0.15901741 prediction 0.434880659091935 Functional Gain - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2810710 chr19:2810711 synonymous SNV . 0 22 hm5C_associated_SNPs_120900 0 0 1 0 2 THOP1 chr19:2810766 5'GT 2810766 Upstream 56bp
chr8 95789953 95789953 1 + C T SKCM 95789952 + 95789932 95789972 41 CAGCATTTGGTGTATGTTCTCCCGAACTTTGGATGACACTT CAGCATTTGGTGTATGTTCTCTCGAACTTTGGATGACACTT < 41bp 0.611067180629832 0.828505706195028 0.37025458 0.8491597 prediction 0.434877051130393 Functional Gain - DPY19L4 ENSG00000156162 CDS Human protein_coding chr8:95789952 chr8:95789953 nonsynonymous SNV 0.983 2 22 hm5C_associated_SNPs_120901 0 0 1 0 2 DPY19L4 chr8:95789894 3'AG 95789894 Downstream 60bp
chr8 95789953 95789953 1 + C T SKCM 95789952 + 95789932 95789972 41 CAGCATTTGGTGTATGTTCTCCCGAACTTTGGATGACACTT CAGCATTTGGTGTATGTTCTCTCGAACTTTGGATGACACTT < 41bp 0.611067180629832 0.828505706195028 0.37025458 0.8491597 prediction 0.434877051130393 Functional Gain - DPY19L4 ENSG00000156162 CDS Human protein_coding chr8:95789952 chr8:95789953 nonsynonymous SNV 0.983 2 22 hm5C_associated_SNPs_120901 0 0 1 0 2 DPY19L4 chr8:95790014 5'GT 95790014 Upstream 62bp
chr5 54403635 54403635 1 + C T UCEC 54403634 + 54403614 54403654 41 GTTCTCAGGAACAAAAGGTCCCAGGTCATTCTTGGGGCTCA GTTCTCAGGAACAAAAGGTCCTAGGTCATTCTTGGGGCTCA < 41bp 0.525576693008665 0.743013859571358 0.42631835 0.32885396 prediction 0.434874333125387 Functional Gain - GZMA ENSG00000145649 CDS Human protein_coding chr5:54403634 chr5:54403635 stopgain 0.000 0 22 hm5C_associated_SNPs_120903 0 0 0 0 1 GZMA chr5:54403622 3'AG 54403622 Downstream 14bp
chr1 109235400 109235400 1 + C A UCEC 109235399 + 109235379 109235419 41 ATGAACCTCAACCCCATGATCCTGACCAACATCCTGTCGTC ATGAACCTCAACCCCATGATCATGACCAACATCCTGTCGTC < 41bp 0.490612273601114 0.717436452747055 0.09790507 0.20151815 prediction 0.434872905494109 Functional Gain - PRPF38B ENSG00000134186 CDS Human protein_coding chr1:109235399 chr1:109235400 nonsynonymous SNV 0.967 2 22 hm5C_associated_SNPs_120904 0 0 1 0 1 PRPF38B chr1:109235489 5'GT 109235489 Upstream 90bp
chr5 1212576 1212576 1 + C T UCEC 1212575 + 1212555 1212595 41 GTCCTGTACATGTGCACCATCCGCGGCATCGAGACCACCGG GTCCTGTACATGTGCACCATCTGCGGCATCGAGACCACCGG < 41bp 0.566028939900801 0.783462774856893 0.8819062 0.7190627 prediction 0.434867669912185 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1212575 chr5:1212576 nonsynonymous SNV 0.678 4 22 hm5C_associated_SNPs_120906 0 0 0 0 1 SLC6A19 chr5:1212599 5'GT 1212599 Upstream 24bp
chr19 55098715 55098715 1 + C T rs149580797 55098714 + 55098694 55098734 41 TACACAGTGGAGAATCTCATCCGCATGGGTGTGGCTGGCTT TACACAGTGGAGAATCTCATCTGCATGGGTGTGGCTGGCTT < 41bp 0.562511181130056 0.779939175221657 0.28429195 0.9055016 prediction 0.434855988183201 Functional Gain - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55098714 chr19:55098715 nonsynonymous SNV 0.016 3 22 hm5C_associated_SNPs_120908 0 0 0 0 1 LILRA2 chr19:55098668 3'AG 55098668 Downstream 48bp
chr1 43825262 43825262 1 + C T SKCM 43825261 + 43825241 43825281 41 ATGGAGGTGGCCAGCTTCCTCCTGAGCAAGGAGAACCAGCC ATGGAGGTGGCCAGCTTCCTCTTGAGCAAGGAGAACCAGCC < 41bp 0.596777938031005 0.814205311809472 0.12255001 0.049585104 prediction 0.434854747556935 Functional Gain - CDC20 ENSG00000117399 CDS Human protein_coding chr1:43825261 chr1:43825262 synonymous SNV . 0 22 hm5C_associated_SNPs_120909 0 0 0 0 1 CDC20 chr1:43825309 5'GT 43825309 Upstream 48bp
chr13 25171402 25171402 1 + A G UCEC 25171399 + 25171379 25171419 41 ACTGAGACACAAAAAAGGGGCTGAGGTTCTATTCACGGTGA ACTGAGACACAAAAAAGGGGCTGGGGTTCTATTCACGGTGA < 41bp 0.503436898060271 0.720863214379569 0.07135522 0.2486915 prediction 0.434852632638596 Functional Gain - TPTE2P6 ENSG00000243008 ncRNA_exonic Human processed_transcript chr13:25171399 chr13:25171402 . . 0 24 hm5C_associated_SNPs_120910 0 0 0 0 1 TPTE2P6 chr13:25171415 5'GT 25171415 Upstream 14bp
chr19 49261258 49261258 1 + C T SKCM 49261257 + 49261237 49261277 41 CGGATACAATGTTTACCAGTCCGAAGCCCACGGCCTCCCGC CGGATACAATGTTTACCAGTCTGAAGCCCACGGCCTCCCGC < 41bp 0.583581693851116 0.801004389122675 0.3842108 0.08765438 prediction 0.434845390543119 Functional Gain - FGF21 ENSG00000105550 CDS Human protein_coding chr19:49261257 chr19:49261258 synonymous SNV . 0 22 hm5C_associated_SNPs_120912 0 0 0 0 1 FGF21 chr19:49261187 3'AG 49261187 Downstream 72bp
chr19 54416192 54416192 1 + T C STAD 54416190 + 54416170 54416210 41 AGCACTGACTACTGGCTGTACATGGAAGAAGGCACAGTGCT AGCACTGACTACTGGCTGTACACGGAAGAAGGCACAGTGCT < 41bp 0.461382701492473 0.71742040739128 0.25931168 0.24459738 prediction 0.434840814782559 Functional Gain - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54416190 chr19:54416192 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_120914 0 0 0 0 1 CACNG7 chr19:54416281 5'GT 54416281 Upstream 90bp
chr1 114450746 114450746 1 + C T SKCM 114450745 + 114450725 114450765 41 TCCAGCCCTGGTTCTTCCTTCCCGACAAGAAGCTGCCCACC TCCAGCCCTGGTTCTTCCTTCTCGACAAGAAGCTGCCCACC < 41bp 0.628881297493629 0.846295098505205 0.17278531 0.57157767 prediction 0.434827602023153 Functional Gain - DCLRE1B ENSG00000118655 CDS Human protein_coding chr1:114450745 chr1:114450746 synonymous SNV . 0 22 hm5C_associated_SNPs_120916 0 0 1 0 1 DCLRE1B chr1:114450813 5'GT 114450813 Upstream 68bp
chr15 69672346 69672346 1 + T G UCEC 69672344 + 69672324 69672364 41 ATTTGGACTCACTTGCTGCCCTTCTGGTACCTTCTGGCCCC ATTTGGACTCACTTGCTGCCCTGCTGGTACCTTCTGGCCCC < 41bp 0.372302354999704 0.717406647623445 0.042447567 0.07874453 prediction 0.43481329524689 Functional Gain - PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69672344 chr15:69672346 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_120920 0 0 0 0 1 PAQR5 chr15:69672349 5'GT 69672349 Upstream 4bp
chrX 102632483 102632483 1 + C T THCA 102632482 + 102632462 102632502 41 ATGCAGAATGGAGAGGAAGACCGCCCTTTGGGAGGAGGTGA ATGCAGAATGGAGAGGAAGACTGCCCTTTGGGAGGAGGTGA < 41bp 0.535199211338022 0.752602011592144 0.3318718 0.2724393 prediction 0.434805600508243 Functional Gain - BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632482 chrX:102632483 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_120922 0 0 1 0 2 BEX3 chrX:102632391 3'AG 102632391 Downstream 93bp
chrX 102632483 102632483 1 + C T THCA 102632482 + 102632462 102632502 41 ATGCAGAATGGAGAGGAAGACCGCCCTTTGGGAGGAGGTGA ATGCAGAATGGAGAGGAAGACTGCCCTTTGGGAGGAGGTGA < 41bp 0.535199211338022 0.752602011592144 0.3318718 0.2724393 prediction 0.434805600508243 Functional Gain - BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632482 chrX:102632483 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_120922 0 0 1 0 2 BEX3 chrX:102632438 3'AG 102632438 Downstream 46bp
chr7 45222846 45222846 1 + C T PAAD 45222845 + 45222825 45222865 41 CCTGGCCCAGGGCTTCATCACCGGCATCCACAGGCAGTTCT CCTGGCCCAGGGCTTCATCACTGGCATCCACAGGCAGTTCT < 41bp 0.556219444522638 0.773616477528587 0.4244965 0.27502736 prediction 0.434794066011897 Functional Gain - RAMP3 ENSG00000122679 CDS Human protein_coding chr7:45222845 chr7:45222846 synonymous SNV . 0 22 hm5C_associated_SNPs_120925 0 0 0 0 1 RAMP3 chr7:45222756 3'AG 45222756 Downstream 91bp
chr9 135763682 135763682 1 + C G LIHC 135763681 + 135763661 135763701 41 CCCTGCCGTCCTGCAGATACCCTCATGATGTGGTGAACCAC CCCTGCCGTCCTGCAGATACCGTCATGATGTGGTGAACCAC < 41bp 0.384146828782556 0.717389217458297 0.05165845 0.0852285 prediction 0.434778434916594 Functional Gain - SPACA9 ENSG00000165698 CDS Human protein_coding chr9:135763681 chr9:135763682 nonsynonymous SNV 0.829 4 22 hm5C_associated_SNPs_120929 0 0 0 0 1 SPACA9 chr9:135763677 3'AG 135763677 Downstream 6bp
chr17 40706578 40706578 1 + A G KIRC 40706575 + 40706555 40706595 41 GCAAGTCTTTCGCGAGGCGGCGCAGAACCCTGAGGAGGTGG GCAAGTCTTTCGCGAGGCGGCGCGGAACCCTGAGGAGGTGG < 41bp 0.579684595942892 0.797067998890339 0.44537902 0.6308303 prediction 0.434766805894893 Functional Gain - HSD17B1 ENSG00000108786 CDS Human protein_coding chr17:40706575 chr17:40706578 nonsynonymous SNV 0.043 2 24 hm5C_associated_SNPs_120930 0 0 0 0 1 HSD17B1 chr17:40706600 5'GT 40706600 Upstream 23bp
chr18 77208872 77208872 1 + C T HNSC 77208871 + 77208851 77208891 41 CTGCGCCCGCACGCCTTCTACCAGGTGCACCGCATCACAGG CTGCGCCCGCACGCCTTCTACTAGGTGCACCGCATCACAGG < 41bp 0.597786435711135 0.815163830866387 0.9147088 0.18212637 prediction 0.434754790310503 Functional Gain - NFATC1 ENSG00000131196 CDS Human protein_coding chr18:77208871 chr18:77208872 stopgain 0.999 1 22 hm5C_associated_SNPs_120933 0 0 0 0 1 NFATC1 chr18:77208782 3'AG 77208782 Downstream 91bp
chr17 79857180 79857180 1 + C T GBM 79857179 + 79857159 79857199 41 TGCCCGCAGCCTGTGCCTGTCCTGGGAGGCAGGGCCCATCC TGCCCGCAGCCTGTGCCTGTCTTGGGAGGCAGGGCCCATCC < 41bp 0.551664309416888 0.769036160142419 0.22237483 0.16146997 prediction 0.434743701451061 Functional Gain - ANAPC11 ENSG00000141552 CDS Human protein_coding chr17:79857179 chr17:79857180 synonymous SNV . 0 22 hm5C_associated_SNPs_120934 0 0 0 0 1 ANAPC11 chr17:79857118 3'AG 79857118 Downstream 63bp
chr3 44380229 44380229 1 + C A rs115800254 44380225 + 44380205 44380245 41 CCCCAGTGCGCATGCGCGTCCGAACAGCCCTGCGGGCGGAG CCCCAGTGCGCATGCGCGTCCGAAAAGCCCTGCGGGCGGAG < 41bp 0.391146034186595 0.717369676952161 0.3738902 0.4019243 prediction 0.434739353904321 Functional Gain - TCAIM ENSG00000179152 UTR5 Human protein_coding chr3:44380225 chr3:44380229 . . 0 25 hm5C_associated_SNPs_120936 0 0 0 0 1 TCAIM chr3:44380326 5'GT 44380326 Upstream 98bp
chr20 47838054 47838054 1 + T C STAD 47838052 + 47838032 47838072 41 ACCGCAGTGCTGATTTCAACCCTGATTTCGTTTTCACTGAG ACCGCAGTGCTGATTTCAACCCCGATTTCGTTTTCACTGAG < 41bp 0.64643817265833 0.863801332587123 0.14596939 0.11328268 prediction 0.434726319857586 Functional Gain - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47838052 chr20:47838054 synonymous SNV . 0 23 hm5C_associated_SNPs_120938 0 0 1 0 2 DDX27 chr20:47837989 3'AG 47837989 Downstream 66bp
chr20 47838054 47838054 1 + T C STAD 47838052 + 47838032 47838072 41 ACCGCAGTGCTGATTTCAACCCTGATTTCGTTTTCACTGAG ACCGCAGTGCTGATTTCAACCCCGATTTCGTTTTCACTGAG < 41bp 0.64643817265833 0.863801332587123 0.14596939 0.11328268 prediction 0.434726319857586 Functional Gain - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47838052 chr20:47838054 synonymous SNV . 0 23 hm5C_associated_SNPs_120938 0 0 1 0 2 DDX27 chr20:47838135 5'GT 47838135 Upstream 82bp
chr19 14817548 14817548 1 + T A rs6511961 14817544 + 14817524 14817564 41 GAGGGTGGTGATACCAGTGCCTACTCTGGGCCACCGCAACC GAGGGTGGTGATACCAGTGCCTACACTGGGCCACCGCAACC < 41bp 0.374168078381522 0.717360013444392 0.073111385 0.87491226 prediction 0.434720026888785 Functional Gain - ZNF333 ENSG00000160961 CDS Human protein_coding chr19:14817544 chr19:14817548 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_120939 0 0 1 0 2 ZNF333 chr19:14817498 3'AG 14817498 Downstream 51bp
chr19 14817548 14817548 1 + T A rs6511961 14817544 + 14817524 14817564 41 GAGGGTGGTGATACCAGTGCCTACTCTGGGCCACCGCAACC GAGGGTGGTGATACCAGTGCCTACACTGGGCCACCGCAACC < 41bp 0.374168078381522 0.717360013444392 0.073111385 0.87491226 prediction 0.434720026888785 Functional Gain - ZNF333 ENSG00000160961 CDS Human protein_coding chr19:14817544 chr19:14817548 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_120939 0 0 1 0 2 ZNF333 chr19:14817585 5'GT 14817585 Upstream 38bp
chr11 61017171 61017171 1 + T C rs636230 61017168 + 61017148 61017188 41 ATGAACGGAGAGACCATCGCCTGTGCTGAGGGCTGCCAGGC ATGAACGGAGAGACCATCGCCTGCGCTGAGGGCTGCCAGGC < 41bp 0.513749046442155 0.731102224591497 0.2934218 0.15337926 prediction 0.434706356298683 Functional Gain - PGA5 ENSG00000229183;ENSG00000256713 CDS Human other chr11:61017168 chr11:61017171 synonymous SNV . 0 24 hm5C_associated_SNPs_120941 0 0 0 0 1 PGA5 chr11:61017141 3'AG 61017141 Downstream 31bp
chr3 89499399 89499399 1 + A G UCEC 89499396 + 89499376 89499416 41 GCCCAGCTGCCTTGTATCAGCTGATGCTGGACTGCTGGCAG GCCCAGCTGCCTTGTATCAGCTGGTGCTGGACTGCTGGCAG < 41bp 0.51991131303059 0.737257651024897 0.31315058 0.36647612 prediction 0.434692675988614 Functional Gain - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89499396 chr3:89499399 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_120944 0 0 1 0 1 EPHA3 chr3:89499327 3'AG 89499327 Downstream 73bp
chr13 114601811 114601811 1 + C G rs80248962 114601810 + 114601790 114601830 41 CACCTGCCCCCCACTCCCGACCAGAGCAGCCGCCGTCCTGG CACCTGCCCCCCACTCCCGACGAGAGCAGCCGCCGTCCTGG < 41bp 0.409802254435086 0.717322740330212 0.6146261 0.6150049 prediction 0.434645480660425 Functional Gain - LINC00452 ENSG00000229373 ncRNA_exonic Human lincRNA chr13:114601810 chr13:114601811 . . 0 22 hm5C_associated_SNPs_120951 0 0 0 0 2 LINC00452 chr13:114601738 3'AG 114601738 Downstream 74bp
chr13 114601811 114601811 1 + C G rs80248962 114601810 + 114601790 114601830 41 CACCTGCCCCCCACTCCCGACCAGAGCAGCCGCCGTCCTGG CACCTGCCCCCCACTCCCGACGAGAGCAGCCGCCGTCCTGG < 41bp 0.409802254435086 0.717322740330212 0.6146261 0.6150049 prediction 0.434645480660425 Functional Gain - LINC00452 ENSG00000229373 ncRNA_exonic Human lincRNA chr13:114601810 chr13:114601811 . . 0 22 hm5C_associated_SNPs_120951 0 0 0 0 2 LINC00452 chr13:114601845 5'GT 114601845 Upstream 35bp
chr1 1268159 1268159 1 + C T rs3813210 1268158 + 1268138 1268178 41 GTGCAACGCCTCAGGCTGCCCCGCGCAGGACCCCGTGAAGC GTGCAACGCCTCAGGCTGCCCTGCGCAGGACCCCGTGAAGC < 41bp 0.545756928773063 0.763077541774595 0.08952865 0.11557436 prediction 0.434641226003065 Functional Gain - TAS1R3 ENSG00000169962 CDS Human protein_coding chr1:1268158 chr1:1268159 synonymous SNV . 0 22 hm5C_associated_SNPs_120954 0 0 0 0 1 TAS1R3 chr1:1268186 5'GT 1268186 Upstream 28bp
chr6 43144340 43144340 1 + C T UCEC 43144339 + 43144319 43144359 41 CCATTCAAGTGCACCAGGCCCCACAGCAAGCGTCTCCCTCC CCATTCAAGTGCACCAGGCCCTACAGCAAGCGTCTCCCTCC < 41bp 0.44738856263349 0.717312171022329 0.037580967 0.63113296 prediction 0.434624342044658 Functional Gain - SRF ENSG00000112658 CDS Human protein_coding chr6:43144339 chr6:43144340 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_120959 0 0 1 0 2 SRF chr6:43144286 3'AG 43144286 Downstream 55bp
chr6 43144340 43144340 1 + C T UCEC 43144339 + 43144319 43144359 41 CCATTCAAGTGCACCAGGCCCCACAGCAAGCGTCTCCCTCC CCATTCAAGTGCACCAGGCCCTACAGCAAGCGTCTCCCTCC < 41bp 0.44738856263349 0.717312171022329 0.037580967 0.63113296 prediction 0.434624342044658 Functional Gain - SRF ENSG00000112658 CDS Human protein_coding chr6:43144339 chr6:43144340 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_120959 0 0 1 0 2 SRF chr6:43144405 5'GT 43144405 Upstream 66bp
chr3 157160234 157160234 1 + T C UCEC 157160232 + 157160212 157160252 41 ATCCAGTGAGACCAATGAGGCTTGAGTCTTTTAGTGCCTGC ATCCAGTGAGACCAATGAGGCTCGAGTCTTTTAGTGCCTGC < 41bp 0.6401801318648 0.85748886997933 0.10035971 0.22640395 prediction 0.434617476229059 Functional Gain - PTX3 ENSG00000163661 CDS Human protein_coding chr3:157160232 chr3:157160234 synonymous SNV . 0 23 hm5C_associated_SNPs_120961 0 0 0 0 1 PTX3 chr3:157160155 3'AG 157160155 Downstream 80bp
chr3 50231195 50231195 1 + C T BLCA 50231194 + 50231174 50231214 41 GGTCTCGCGCAGCTACCTCTCCGACCTGGAGCGCCTGGTAA GGTCTCGCGCAGCTACCTCTCTGACCTGGAGCGCCTGGTAA < 41bp 0.486659521737154 0.717304847125037 0.86164534 0.5104883 prediction 0.434609694250075 Functional Gain - GNAT1 ENSG00000114349 CDS Human protein_coding chr3:50231194 chr3:50231195 synonymous SNV . 0 22 hm5C_associated_SNPs_120962 0 0 0 0 1 GNAT1 chr3:50231186 3'AG 50231186 Downstream 10bp
chr1 900438 900438 1 + C A UCEC 900437 + 900417 900457 41 ACTCCATCGAGAAGTACAACCCGAGGACCAACAAGTGGGTG ACTCCATCGAGAAGTACAACCAGAGGACCAACAAGTGGGTG < 41bp 0.459590689407131 0.717300390484717 0.5664938 0.9151313 prediction 0.434600780969433 Functional Gain - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:900437 chr1:900438 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_120965 0 0 0 2 1 KLHL17 chr1:900343 3'AG 900343 Downstream 96bp
chr5 653169 653169 1 + C T UCEC 653168 + 653148 653188 41 GGTGCGGGCGCAGCACAGAGCCGAGGTGGAGCAGATGCACT GGTGCGGGCGCAGCACAGAGCTGAGGTGGAGCAGATGCACT < 41bp 0.509960477503895 0.727255831494796 0.85668963 0.52239114 prediction 0.434590707981803 Functional Gain - CEP72 ENSG00000112877 CDS Human protein_coding chr5:653168 chr5:653169 synonymous SNV . 0 22 hm5C_associated_SNPs_120969 0 0 1 0 1 CEP72 chr5:653103 3'AG 653103 Downstream 67bp
chr20 2290333 2290333 1 + C A rs214803 2290329 + 2290309 2290349 41 GAGTCCAGAGTATCAACTGGCAGACGGCCTTCAACCGACAA GAGTCCAGAGTATCAACTGGCAGAAGGCCTTCAACCGACAA < 41bp 0.310808014802419 0.717288435128345 0.35229176 0.3261795 prediction 0.434576870256689 Functional Gain - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2290329 chr20:2290333 nonsynonymous SNV 0.018 1 25 hm5C_associated_SNPs_120973 0 0 0 0 1 TGM3 chr20:2290303 3'AG 2290303 Downstream 31bp
chr1 48701511 48701511 1 + C T HNSC 48701510 + 48701490 48701530 41 ATTGATGTGTGGCAGCGCTTCCGCAGGAAGTCAACAGAGCA ATTGATGTGTGGCAGCGCTTCTGCAGGAAGTCAACAGAGCA < 41bp 0.601781587579475 0.819069985716995 0.17721647 0.21113142 prediction 0.434576796275041 Functional Gain - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48701510 chr1:48701511 nonsynonymous SNV 0.904 5 22 hm5C_associated_SNPs_120974 0 0 1 0 1 SLC5A9 chr1:48701551 5'GT 48701551 Upstream 41bp
chr2 238427252 238427252 1 + C A CESC 238427248 + 238427228 238427268 41 GACAGATGAGGATGGAGAACCTGGCTCAGAGGCCCAGGCCC GACAGATGAGGATGGAGAACCTGGATCAGAGGCCCAGGCCC < 41bp 0.722718247375249 0.940006496883366 0.39327627 0.45064935 prediction 0.434576499016234 Functional Gain - MLPH ENSG00000115648 CDS Human protein_coding chr2:238427248 chr2:238427252 synonymous SNV . 0 25 hm5C_associated_SNPs_120975 0 0 0 0 2 MLPH chr2:238427182 3'AG 238427182 Downstream 71bp
chr2 238427252 238427252 1 + C A CESC 238427248 + 238427228 238427268 41 GACAGATGAGGATGGAGAACCTGGCTCAGAGGCCCAGGCCC GACAGATGAGGATGGAGAACCTGGATCAGAGGCCCAGGCCC < 41bp 0.722718247375249 0.940006496883366 0.39327627 0.45064935 prediction 0.434576499016234 Functional Gain - MLPH ENSG00000115648 CDS Human protein_coding chr2:238427248 chr2:238427252 synonymous SNV . 0 25 hm5C_associated_SNPs_120975 0 0 0 0 2 MLPH chr2:238427291 5'GT 238427291 Upstream 40bp
chr2 216191621 216191621 1 + A G UCEC 216191618 + 216191598 216191638 41 ACAGTACAGCAAAGGCGTATCTCAGATGCCCTTGAGATATG ACAGTACAGCAAAGGCGTATCTCGGATGCCCTTGAGATATG < 41bp 0.561167279804924 0.778452809856638 0.2316638 0.3081368 prediction 0.434571060103427 Functional Gain - ATIC ENSG00000138363 CDS Human protein_coding chr2:216191618 chr2:216191621 nonsynonymous SNV 0.906 3 24 hm5C_associated_SNPs_120976 0 0 1 0 2 ATIC chr2:216191545 3'AG 216191545 Downstream 77bp
chr2 216191621 216191621 1 + A G UCEC 216191618 + 216191598 216191638 41 ACAGTACAGCAAAGGCGTATCTCAGATGCCCTTGAGATATG ACAGTACAGCAAAGGCGTATCTCGGATGCCCTTGAGATATG < 41bp 0.561167279804924 0.778452809856638 0.2316638 0.3081368 prediction 0.434571060103427 Functional Gain - ATIC ENSG00000138363 CDS Human protein_coding chr2:216191618 chr2:216191621 nonsynonymous SNV 0.906 3 24 hm5C_associated_SNPs_120976 0 0 1 0 2 ATIC chr2:216191701 5'GT 216191701 Upstream 81bp
chr9 35675828 35675828 1 + C T SKCM 35675827 + 35675807 35675847 41 GTCCCCGGTGGATATCCGCCCCCAGCTCGCCGCCTTCTGCC GTCCCCGGTGGATATCCGCCCTCAGCTCGCCGCCTTCTGCC < 41bp 0.469168385181784 0.717280435767125 0.082164735 0.12732285 prediction 0.43456087153425 Functional Gain - CA9 ENSG00000107159 CDS Human protein_coding chr9:35675827 chr9:35675828 synonymous SNV . 0 22 hm5C_associated_SNPs_120978 0 0 1 0 1 CA9 chr9:35675758 3'AG 35675758 Downstream 71bp
chr17 32959924 32959924 1 + C T rs148901847 32959923 + 32959903 32959943 41 AGGGTACCTATCCTCCCCGACCGGAGGTACAGCCCCTCTCC AGGGTACCTATCCTCCCCGACTGGAGGTACAGCCCCTCTCC < 41bp 0.590937032546445 0.808215820123186 0.9188453 0.83287746 prediction 0.434557575153481 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32959923 chr17:32959924 nonsynonymous SNV 0.988 3 22 hm5C_associated_SNPs_120980 0 0 0 0 1 TMEM132E chr17:32959928 5'GT 32959928 Upstream 5bp
chr13 95257708 95257708 1 + A G STAD 95257705 + 95257685 95257725 41 AGTAGCTGTTGGAAAAGAAGCTAAACTCTACCTGTTCCAAG AGTAGCTGTTGGAAAAGAAGCTAGACTCTACCTGTTCCAAG < 41bp 0.543528861505488 0.760807624994947 0.11306107 0.1511066 prediction 0.434557526978918 Functional Gain - GPR180 ENSG00000152749 CDS Human protein_coding chr13:95257705 chr13:95257708 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_120981 0 0 1 0 3 GPR180 chr13:95257645 3'AG 95257645 Downstream 64bp
chr13 95257708 95257708 1 + A G STAD 95257705 + 95257685 95257725 41 AGTAGCTGTTGGAAAAGAAGCTAAACTCTACCTGTTCCAAG AGTAGCTGTTGGAAAAGAAGCTAGACTCTACCTGTTCCAAG < 41bp 0.543528861505488 0.760807624994947 0.11306107 0.1511066 prediction 0.434557526978918 Functional Gain - GPR180 ENSG00000152749 CDS Human protein_coding chr13:95257705 chr13:95257708 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_120981 0 0 1 0 3 GPR180 chr13:95257670 3'AG 95257670 Downstream 39bp
chr13 95257708 95257708 1 + A G STAD 95257705 + 95257685 95257725 41 AGTAGCTGTTGGAAAAGAAGCTAAACTCTACCTGTTCCAAG AGTAGCTGTTGGAAAAGAAGCTAGACTCTACCTGTTCCAAG < 41bp 0.543528861505488 0.760807624994947 0.11306107 0.1511066 prediction 0.434557526978918 Functional Gain - GPR180 ENSG00000152749 CDS Human protein_coding chr13:95257705 chr13:95257708 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_120981 0 0 1 0 3 GPR180 chr13:95257803 5'GT 95257803 Upstream 96bp
chr12 58109752 58109752 1 + C T rs563206099 58109751 + 58109731 58109771 41 GGCCTACGTTCAGAGGCAAGCCGGTGAGTAATTAGAGAAGG GGCCTACGTTCAGAGGCAAGCTGGTGAGTAATTAGAGAAGG < 41bp 0.550376788971843 0.767646946624603 0.22052747 0.37583837 prediction 0.43454031530552 Functional Gain - OS9 ENSG00000135506 CDS Human protein_coding chr12:58109751 chr12:58109752 synonymous SNV . 0 22 hm5C_associated_SNPs_120984 0 0 1 0 1 OS9 chr12:58109753 5'GT 58109753 Upstream 2bp
chr19 55350911 55350911 1 + C A rs11880061 55350907 + 55350887 55350927 41 ATATGAGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCACGG ATATGAGAAACCTTCTCTCTCAGCACAGCCGGGCCCCACGG < 41bp 0.334623785031266 0.717259695451491 0.86350644 0.5938488 prediction 0.434519390902981 Functional Gain - KIR2DS4 ENSG00000221957 CDS Human polymorphic_pseudogene chr19:55350907 chr19:55350911 unknown . 0 25 hm5C_associated_SNPs_120988 0 0 0 0 1 KIR2DS4 chr19:55350883 3'AG 55350883 Downstream 29bp
chr4 156618130 156618130 1 + A G HNSC 156618127 + 156618107 156618147 41 TCAGAGGAGGCAGCAGGAAGCTCAGAGAGCTGCAAAGCAAC TCAGAGGAGGCAGCAGGAAGCTCGGAGAGCTGCAAAGCAAC < 41bp 0.559615852831613 0.776874585677197 0.4291634 0.72241485 prediction 0.434517465691167 Functional Gain - GUCY1A3 ENSG00000164116 CDS Human protein_coding chr4:156618127 chr4:156618130 synonymous SNV . 0 24 hm5C_associated_SNPs_120989 0 0 0 0 1 GUCY1A3 chr4:156618087 3'AG 156618087 Downstream 44bp
chr16 30485571 30485571 1 + C T UCEC 30485570 + 30485550 30485590 41 GCGCGCGGAGCTTCTCCCCACCGCGCGCCGGGAGGCACTTT GCGCGCGGAGCTTCTCCCCACTGCGCGCCGGGAGGCACTTT < 41bp 0.475563803187713 0.717247507848809 0.20639631 0.2855391 prediction 0.434495015697618 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30485570 chr16:30485571 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_120995 0 0 0 0 3 ITGAL chr16:30485517 3'AG 30485517 Downstream 55bp
chr16 30485571 30485571 1 + C T UCEC 30485570 + 30485550 30485590 41 GCGCGCGGAGCTTCTCCCCACCGCGCGCCGGGAGGCACTTT GCGCGCGGAGCTTCTCCCCACTGCGCGCCGGGAGGCACTTT < 41bp 0.475563803187713 0.717247507848809 0.20639631 0.2855391 prediction 0.434495015697618 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30485570 chr16:30485571 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_120995 0 0 0 0 3 ITGAL chr16:30485608 5'GT 30485608 Upstream 38bp
chr16 30485571 30485571 1 + C T UCEC 30485570 + 30485550 30485590 41 GCGCGCGGAGCTTCTCCCCACCGCGCGCCGGGAGGCACTTT GCGCGCGGAGCTTCTCCCCACTGCGCGCCGGGAGGCACTTT < 41bp 0.475563803187713 0.717247507848809 0.20639631 0.2855391 prediction 0.434495015697618 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30485570 chr16:30485571 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_120995 0 0 0 0 3 ITGAL chr16:30485619 5'GT 30485619 Upstream 49bp
chr17 8157270 8157270 1 + T C LIHC 8157268 + 8157248 8157288 41 CTGCAGAGATGTCCCCAGTCCTTCACTTCTATGTTCGTCCC CTGCAGAGATGTCCCCAGTCCTCCACTTCTATGTTCGTCCC < 41bp 0.410282020266664 0.717247233612249 0.016709626 0.86227286 prediction 0.434494467224499 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8157268 chr17:8157270 synonymous SNV . 0 23 hm5C_associated_SNPs_120996 0 0 1 0 1 PFAS chr17:8157177 3'AG 8157177 Downstream 94bp
chr17 55752377 55752377 1 + C T SKCM 55752376 + 55752356 55752396 41 GGCTTCCCGGGGGCCAACAGCCCAGGACCTGTCGCCGATCT GGCTTCCCGGGGGCCAACAGCTCAGGACCTGTCGCCGATCT < 41bp 0.496812589705809 0.717234727720127 0.53170145 0.329894 prediction 0.434469455440253 Functional Gain - MSI2 ENSG00000153944 CDS Human protein_coding chr17:55752376 chr17:55752377 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_120999 0 0 1 0 2 MSI2 chr17:55752279 3'AG 55752279 Downstream 99bp
chr17 55752377 55752377 1 + C T SKCM 55752376 + 55752356 55752396 41 GGCTTCCCGGGGGCCAACAGCCCAGGACCTGTCGCCGATCT GGCTTCCCGGGGGCCAACAGCTCAGGACCTGTCGCCGATCT < 41bp 0.496812589705809 0.717234727720127 0.53170145 0.329894 prediction 0.434469455440253 Functional Gain - MSI2 ENSG00000153944 CDS Human protein_coding chr17:55752376 chr17:55752377 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_120999 0 0 1 0 2 MSI2 chr17:55752333 3'AG 55752333 Downstream 45bp
chr16 88008773 88008773 1 + C T SKCM 88008772 + 88008752 88008792 41 GTTCAGATTGCAGTGGAAGACCTGAGCCCTGACCACCCAGG GTTCAGATTGCAGTGGAAGACTTGAGCCCTGACCACCCAGG < 41bp 0.465163498208866 0.717230082695281 0.33183867 0.25328952 prediction 0.434460165390562 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88008772 chr16:88008773 synonymous SNV . 0 22 hm5C_associated_SNPs_121001 0 0 1 0 2 BANP chr16:88008791 5'GT 88008791 Upstream 19bp
chr16 88008773 88008773 1 + C T SKCM 88008772 + 88008752 88008792 41 GTTCAGATTGCAGTGGAAGACCTGAGCCCTGACCACCCAGG GTTCAGATTGCAGTGGAAGACTTGAGCCCTGACCACCCAGG < 41bp 0.465163498208866 0.717230082695281 0.33183867 0.25328952 prediction 0.434460165390562 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88008772 chr16:88008773 synonymous SNV . 0 22 hm5C_associated_SNPs_121001 0 0 1 0 2 BANP chr16:88008809 5'GT 88008809 Upstream 37bp
chr19 36034720 36034720 1 + C T GBM 36034719 + 36034699 36034739 41 GGCTGGCATCCTTGCCTACACCGAGGATGAGGTAGGGGCTG GGCTGGCATCCTTGCCTACACTGAGGATGAGGTAGGGGCTG < 41bp 0.547867907062774 0.765091460927512 0.7146994 0.42708856 prediction 0.434447107729477 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36034719 chr19:36034720 synonymous SNV . 0 22 hm5C_associated_SNPs_121002 0 0 0 0 1 GAPDHS chr19:36034729 5'GT 36034729 Upstream 10bp
chr4 1808044 1808044 1 + C T BLCA 1808043 + 1808023 1808063 41 TTTGACCGAGTCTACACTCACCAGAGTGACGTGTACGTGTC TTTGACCGAGTCTACACTCACTAGAGTGACGTGTACGTGTC < 41bp 0.609344426856294 0.826563285411459 0.85917336 0.7966558 prediction 0.43443771711033 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1808043 chr4:1808044 stopgain 1.000 0 22 hm5C_associated_SNPs_121005 0 0 1 0 2 FGFR3 chr4:1807984 3'AG 1807984 Downstream 61bp
chr4 1808044 1808044 1 + C T BLCA 1808043 + 1808023 1808063 41 TTTGACCGAGTCTACACTCACCAGAGTGACGTGTACGTGTC TTTGACCGAGTCTACACTCACTAGAGTGACGTGTACGTGTC < 41bp 0.609344426856294 0.826563285411459 0.85917336 0.7966558 prediction 0.43443771711033 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1808043 chr4:1808044 stopgain 1.000 0 22 hm5C_associated_SNPs_121005 0 0 1 0 2 FGFR3 chr4:1808054 5'GT 1808054 Upstream 11bp
chr3 66431248 66431248 1 - G A rs35066235 66431249 - 66431229 66431269 41 CGTATGCAGTGACTGCAACACCGAAGTGGACTGTTACTCCA CGTATGCAGTGACTGCAACACTGAAGTGGACTGTTACTCCA < 41bp 0.584910963649568 0.802121452689966 0.265504 0.23854837 prediction 0.434420978080797 Functional Gain - LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66431249 chr3:66431248 synonymous SNV . 0 22 hm5C_associated_SNPs_121009 0 0 1 0 1 LRIG1 chr3:66431285 3'AG 66431285 Downstream 38bp
chr1 218458715 218458715 1 + C A rs114550993 218458714 + 218458694 218458734 41 GGAAGAAAACCTGAAAAAGACCCCAAAGAAGAAGATGAAAA GGAAGAAAACCTGAAAAAGACACCAAAGAAGAAGATGAAAA < 41bp 0.559116939374906 0.776327402750287 0.16975331 0.33645654 prediction 0.434420926750763 Functional Gain - RRP15 ENSG00000067533 CDS Human protein_coding chr1:218458714 chr1:218458715 synonymous SNV . 0 22 hm5C_associated_SNPs_121010 0 0 1 0 1 RRP15 chr1:218458797 5'GT 218458797 Upstream 83bp
chr19 19613178 19613178 1 + C T LUSC 19613177 + 19613157 19613197 41 CCGGGGTTCGGCCACGACGCCCCGAGGTGTCCTGCACACGT CCGGGGTTCGGCCACGACGCCTCGAGGTGTCCTGCACACGT < 41bp 0.622077735093266 0.839287655838606 0.0876323 0.46752945 prediction 0.43441984149068 Functional Gain - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19613177 chr19:19613178 synonymous SNV . 0 22 hm5C_associated_SNPs_121011 0 0 1 0 1 GATAD2A chr19:19613140 3'AG 19613140 Downstream 39bp
chr1 53072454 53072454 1 + T C rs1970951 53072451 + 53072431 53072471 41 CGAGACCTGGGCCCCCACCACTTTAACGTGCTCGCCTTCCC CGAGACCTGGGCCCCCACCACTTCAACGTGCTCGCCTTCCC < 41bp 0.545577346761044 0.762785961918227 0.11864248 0.17861348 prediction 0.434417230314366 Functional Gain - GPX7 ENSG00000116157 CDS Human protein_coding chr1:53072451 chr1:53072454 synonymous SNV . 0 24 hm5C_associated_SNPs_121012 0 0 0 0 1 GPX7 chr1:53072356 3'AG 53072356 Downstream 99bp
chr1 53099258 53099258 1 + C G CESC 53099254 + 53099234 53099274 41 GCCGGGGGGCGAGGCGGCCGCTGTCTTCTGCTGCGGCTTCC GCCGGGGGGCGAGGCGGCCGCTGTGTTCTGCTGCGGCTTCC < 41bp 0.644368458896165 0.861574816550897 0.65769 0.75228167 prediction 0.434412715309463 Functional Gain - FAM159A ENSG00000182183 CDS Human protein_coding chr1:53099254 chr1:53099258 synonymous SNV . 0 25 hm5C_associated_SNPs_121014 0 0 0 0 1 FAM159A chr1:53099347 5'GT 53099347 Upstream 90bp
chr19 8326855 8326855 1 + C T SKCM 8326854 + 8326834 8326874 41 TGATGTAGAAGAATCAGACTCCAGTGAGGAGGCGGCGGCGG TGATGTAGAAGAATCAGACTCTAGTGAGGAGGCGGCGGCGG < 41bp 0.545145519155038 0.762344236885394 0.45592538 0.34480554 prediction 0.434397435460711 Functional Gain - CERS4 ENSG00000090661 CDS Human protein_coding chr19:8326854 chr19:8326855 synonymous SNV . 0 22 hm5C_associated_SNPs_121017 0 0 1 0 1 CERS4 chr19:8326814 3'AG 8326814 Downstream 42bp
chr12 40728838 40728838 1 + C T UCEC 40728837 + 40728817 40728857 41 CTGGCAGCTGGGATTCGTCCCCGGATGTTGGTGATGGAGTT CTGGCAGCTGGGATTCGTCCCTGGATGTTGGTGATGGAGTT < 41bp 0.480033086118722 0.717191376431017 0.8198282 0.6371853 prediction 0.434382752862033 Functional Gain - LRRK2 ENSG00000188906 CDS Human protein_coding chr12:40728837 chr12:40728838 nonsynonymous SNV 0.981 4 22 hm5C_associated_SNPs_121018 0 0 0 0 1 LRRK2 chr12:40728769 3'AG 40728769 Downstream 70bp
chr17 25628904 25628904 1 + C T UCEC 25628903 + 25628883 25628923 41 ATTGGACTGTTGCTTTTGCTCCAGATGGTTCATACTTTGCT ATTGGACTGTTGCTTTTGCTCTAGATGGTTCATACTTTGCT < 41bp 0.591100633591277 0.808290468352531 0.37174678 0.26957828 prediction 0.434379669522509 Functional Gain - WSB1 ENSG00000109046 CDS Human protein_coding chr17:25628903 chr17:25628904 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_121019 0 0 1 0 2 WSB1 chr17:25628814 3'AG 25628814 Downstream 91bp
chr17 25628904 25628904 1 + C T UCEC 25628903 + 25628883 25628923 41 ATTGGACTGTTGCTTTTGCTCCAGATGGTTCATACTTTGCT ATTGGACTGTTGCTTTTGCTCTAGATGGTTCATACTTTGCT < 41bp 0.591100633591277 0.808290468352531 0.37174678 0.26957828 prediction 0.434379669522509 Functional Gain - WSB1 ENSG00000109046 CDS Human protein_coding chr17:25628903 chr17:25628904 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_121019 0 0 1 0 2 WSB1 chr17:25628982 5'GT 25628982 Upstream 79bp
chr17 32598267 32598267 1 + C T SKCM 32598266 + 32598246 32598286 41 GGACCACCAGTAGCCACTGTCCCCGGGAAGCTGTAATGTAT GGACCACCAGTAGCCACTGTCTCCGGGAAGCTGTAATGTAT < 41bp 0.608682800592874 0.825867719192188 0.21581244 0.2326279 prediction 0.434369837198628 Functional Gain - CCL7 ENSG00000108688 CDS Human protein_coding chr17:32598266 chr17:32598267 nonsynonymous SNV 0.027 0 22 hm5C_associated_SNPs_121023 0 0 0 0 1 CCL7 chr17:32598282 5'GT 32598282 Upstream 16bp
chr20 61594660 61594660 1 + C T HNSC 61594659 + 61594639 61594679 41 TTGGGTGTCCTGGCCCAAAGCCGGCCGGTGTCCAGGCACAA TTGGGTGTCCTGGCCCAAAGCTGGCCGGTGTCCAGGCACAA < 41bp 0.4738039727068 0.717182296949996 0.8185917 0.54336303 prediction 0.434364593899991 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61594659 chr20:61594660 nonsynonymous SNV 0.015 1 22 hm5C_associated_SNPs_121024 0 0 1 0 2 SLC17A9 chr20:61594625 3'AG 61594625 Downstream 36bp
chr20 61594660 61594660 1 + C T HNSC 61594659 + 61594639 61594679 41 TTGGGTGTCCTGGCCCAAAGCCGGCCGGTGTCCAGGCACAA TTGGGTGTCCTGGCCCAAAGCTGGCCGGTGTCCAGGCACAA < 41bp 0.4738039727068 0.717182296949996 0.8185917 0.54336303 prediction 0.434364593899991 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61594659 chr20:61594660 nonsynonymous SNV 0.015 1 22 hm5C_associated_SNPs_121024 0 0 1 0 2 SLC17A9 chr20:61594721 5'GT 61594721 Upstream 62bp
chr3 185304281 185304281 1 + T A COAD 185304277 + 185304257 185304297 41 CGGTGCCCCCTGCCCGGGCCCTCCTGAAGAGGCGGCGCTCA CGGTGCCCCCTGCCCGGGCCCTCCAGAAGAGGCGGCGCTCA < 41bp 0.683481342158089 0.900661622149702 0.2239548 0.93957067 prediction 0.434360559983227 Functional Gain - SENP2 ENSG00000163904 CDS Human protein_coding chr3:185304277 chr3:185304281 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_121026 0 0 1 0 1 SENP2 chr3:185304302 5'GT 185304302 Upstream 22bp
chr4 187078828 187078828 1 + C T rs76536463 187078827 + 187078807 187078847 41 TGGCCCCCCGTCCGGACACGCCGAGGCTCACGGCATCTCCC TGGCCCCCCGTCCGGACACGCTGAGGCTCACGGCATCTCCC < 41bp 0.472226009639921 0.717178123514546 0.5479115 0.3158481 prediction 0.434356247029092 Functional Gain - FAM149A ENSG00000109794 CDS Human protein_coding chr4:187078827 chr4:187078828 synonymous SNV . 0 22 hm5C_associated_SNPs_121027 0 0 0 0 1 FAM149A chr4:187078873 5'GT 187078873 Upstream 46bp
chr3 42784515 42784515 1 + C T SKCM 42784514 + 42784494 42784534 41 GCTGTTCCCGCAGACTGGCTCCGGGCCTGGCCCAATTGCTT GCTGTTCCCGCAGACTGGCTCTGGGCCTGGCCCAATTGCTT < 41bp 0.53668310966679 0.753860477293593 0.7642169 0.6990406 prediction 0.434354735253606 Functional Gain - CCDC13 ENSG00000244607 CDS Human protein_coding chr3:42784514 chr3:42784515 nonsynonymous SNV 0.243 0 22 hm5C_associated_SNPs_121028 0 0 0 0 2 CCDC13 chr3:42784418 3'AG 42784418 Downstream 98bp
chr3 42784515 42784515 1 + C T SKCM 42784514 + 42784494 42784534 41 GCTGTTCCCGCAGACTGGCTCCGGGCCTGGCCCAATTGCTT GCTGTTCCCGCAGACTGGCTCTGGGCCTGGCCCAATTGCTT < 41bp 0.53668310966679 0.753860477293593 0.7642169 0.6990406 prediction 0.434354735253606 Functional Gain - CCDC13 ENSG00000244607 CDS Human antisense chr3:42784514 chr3:42784515 nonsynonymous SNV 0.243 0 22 hm5C_associated_SNPs_121028 0 0 0 0 2 CCDC13-AS1 chr3:42784558 5'GT 42784558 Upstream 44bp
chr11 122742011 122742011 1 + A G UCEC 122742008 + 122741988 122742028 41 ATGCGTTGCATGAACTACATCACAAAGTTGTACTCAGAAGC ATGCGTTGCATGAACTACATCACGAAGTTGTACTCAGAAGC < 41bp 0.483606406954415 0.717177199892312 0.04206261 0.110035 prediction 0.434354399784625 Functional Gain - CRTAM ENSG00000109943 CDS Human protein_coding chr11:122742008 chr11:122742011 synonymous SNV . 0 24 hm5C_associated_SNPs_121029 0 0 0 0 1 CRTAM chr11:122741977 3'AG 122741977 Downstream 35bp
chr6 41309820 41309820 1 + C T UCEC 41309819 + 41309799 41309839 41 GGCCCTGCAGCCCCCATTGCCCTGGTGCCTGTGTTCTGTGG GGCCCTGCAGCCCCCATTGCCTTGGTGCCTGTGTTCTGTGG < 41bp 0.472787233686257 0.717176508115187 0.16025949 0.099432945 prediction 0.434353016230373 Functional Gain - NCR2 ENSG00000096264 CDS Human protein_coding chr6:41309819 chr6:41309820 synonymous SNV . 0 22 hm5C_associated_SNPs_121030 0 0 1 0 3 NCR2 chr6:41309738 3'AG 41309738 Downstream 83bp
chr6 41309820 41309820 1 + C T UCEC 41309819 + 41309799 41309839 41 GGCCCTGCAGCCCCCATTGCCCTGGTGCCTGTGTTCTGTGG GGCCCTGCAGCCCCCATTGCCTTGGTGCCTGTGTTCTGTGG < 41bp 0.472787233686257 0.717176508115187 0.16025949 0.099432945 prediction 0.434353016230373 Functional Gain - NCR2 ENSG00000096264 CDS Human protein_coding chr6:41309819 chr6:41309820 synonymous SNV . 0 22 hm5C_associated_SNPs_121030 0 0 1 0 3 NCR2 chr6:41309774 3'AG 41309774 Downstream 47bp
chr6 41309820 41309820 1 + C T UCEC 41309819 + 41309799 41309839 41 GGCCCTGCAGCCCCCATTGCCCTGGTGCCTGTGTTCTGTGG GGCCCTGCAGCCCCCATTGCCTTGGTGCCTGTGTTCTGTGG < 41bp 0.472787233686257 0.717176508115187 0.16025949 0.099432945 prediction 0.434353016230373 Functional Gain - NCR2 ENSG00000096264 CDS Human protein_coding chr6:41309819 chr6:41309820 synonymous SNV . 0 22 hm5C_associated_SNPs_121030 0 0 1 0 3 NCR2 chr6:41309887 5'GT 41309887 Upstream 68bp
chr17 73221439 73221439 1 + C A rs2291029 73221438 + 73221418 73221458 41 TGGCTGGTCTCTCCCTTAGCCCGGGAACACCCAGACACTGA TGGCTGGTCTCTCCCTTAGCCAGGGAACACCCAGACACTGA < 41bp 0.623027525406545 0.840201810564907 0.36634007 0.88979423 prediction 0.434348570316725 Functional Gain - NUP85 ENSG00000125450 CDS Human protein_coding chr17:73221438 chr17:73221439 synonymous SNV . 0 22 hm5C_associated_SNPs_121031 0 0 1 0 1 NUP85 chr17:73221437 3'AG 73221437 Downstream 3bp
chr7 107303779 107303779 1 + T G GBM 107303776 + 107303756 107303796 41 AGCCTTTGGTGTGCTAAAGACTCTTGTGCCCATCTTGGAGT AGCCTTTGGTGTGCTAAAGACTCGTGTGCCCATCTTGGAGT < 41bp 0.319673314105765 0.717168157958999 0.12868556 0.23464468 prediction 0.434336315917998 Functional Gain - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107303776 chr7:107303779 nonsynonymous SNV 0.203 2 24 hm5C_associated_SNPs_121035 0 0 0 0 1 SLC26A4 chr7:107303741 3'AG 107303741 Downstream 39bp
chr15 90996086 90996086 1 + C T COAD 90996085 + 90996065 90996105 41 TGTTTTGGAACTGATGAATCCCGAAGCCCAGCTGCCCCAGG TGTTTTGGAACTGATGAATCCTGAAGCCCAGCTGCCCCAGG < 41bp 0.461855088759231 0.717166607407852 0.8650456 0.26646835 prediction 0.434333214815705 Functional Gain - IQGAP1 ENSG00000140575 CDS Human protein_coding chr15:90996085 chr15:90996086 synonymous SNV . 0 22 hm5C_associated_SNPs_121036 0 0 1 0 2 IQGAP1 chr15:90996007 3'AG 90996007 Downstream 80bp
chr15 90996086 90996086 1 + C T COAD 90996085 + 90996065 90996105 41 TGTTTTGGAACTGATGAATCCCGAAGCCCAGCTGCCCCAGG TGTTTTGGAACTGATGAATCCTGAAGCCCAGCTGCCCCAGG < 41bp 0.461855088759231 0.717166607407852 0.8650456 0.26646835 prediction 0.434333214815705 Functional Gain - IQGAP1 ENSG00000140575 CDS Human protein_coding chr15:90996085 chr15:90996086 synonymous SNV . 0 22 hm5C_associated_SNPs_121036 0 0 1 0 2 IQGAP1 chr15:90996170 5'GT 90996170 Upstream 85bp
chr1 26358933 26358933 1 + C A LIHC 26358932 + 26358912 26358952 41 GGCCACTCCCATCCAGGTGGCCGGAGACAGCTGTGCCCTTG GGCCACTCCCATCCAGGTGGCAGGAGACAGCTGTGCCCTTG < 41bp 0.628636972535021 0.845798682914382 0.8488191 0.84884834 prediction 0.434323420758722 Functional Gain - EXTL1 ENSG00000158008 CDS Human protein_coding chr1:26358932 chr1:26358933 nonsynonymous SNV 0.841 1 22 hm5C_associated_SNPs_121039 0 0 0 0 2 EXTL1 chr1:26358887 3'AG 26358887 Downstream 47bp
chr1 26358933 26358933 1 + C A LIHC 26358932 + 26358912 26358952 41 GGCCACTCCCATCCAGGTGGCCGGAGACAGCTGTGCCCTTG GGCCACTCCCATCCAGGTGGCAGGAGACAGCTGTGCCCTTG < 41bp 0.628636972535021 0.845798682914382 0.8488191 0.84884834 prediction 0.434323420758722 Functional Gain - EXTL1 ENSG00000158008 CDS Human protein_coding chr1:26358932 chr1:26358933 nonsynonymous SNV 0.841 1 22 hm5C_associated_SNPs_121039 0 0 0 0 2 EXTL1 chr1:26358976 5'GT 26358976 Upstream 44bp
chr10 12259450 12259450 1 + C G SKCM 12259446 + 12259426 12259466 41 TTCAAGAGTTCCGATTTCATCACTCGTGACTTCACTCAGCC TTCAAGAGTTCCGATTTCATCACTGGTGACTTCACTCAGCC < 41bp 0.436116742042082 0.71715446929646 0.18493846 0.25266707 prediction 0.434308938592921 Functional Gain - CDC123 ENSG00000151465 CDS Human protein_coding chr10:12259446 chr10:12259450 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_121044 0 0 1 0 2 CDC123 chr10:12259360 3'AG 12259360 Downstream 91bp
chr10 12259450 12259450 1 + C G SKCM 12259446 + 12259426 12259466 41 TTCAAGAGTTCCGATTTCATCACTCGTGACTTCACTCAGCC TTCAAGAGTTCCGATTTCATCACTGGTGACTTCACTCAGCC < 41bp 0.436116742042082 0.71715446929646 0.18493846 0.25266707 prediction 0.434308938592921 Functional Gain - CDC123 ENSG00000151465 CDS Human protein_coding chr10:12259446 chr10:12259450 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_121044 0 0 1 0 2 CDC123 chr10:12259466 5'GT 12259466 Upstream 17bp
chr6 42986204 42986204 1 + C T UCEC 42986203 + 42986183 42986223 41 AACAATGAGATTTACTGCAACCGCATTCGAGTCTTTGACAC AACAATGAGATTTACTGCAACTGCATTCGAGTCTTTGACAC < 41bp 0.62438511614697 0.841538566879963 0.10871956 0.23541823 prediction 0.434306901465985 Functional Gain - KLHDC3 ENSG00000124702 CDS Human protein_coding chr6:42986203 chr6:42986204 nonsynonymous SNV 0.988 3 22 hm5C_associated_SNPs_121045 0 0 1 0 1 KLHDC3 chr6:42986294 5'GT 42986294 Upstream 91bp
chr6 159146568 159146568 1 + A G UCEC 159146565 + 159146545 159146585 41 CACCAGATATTCTGAAACCTCTCAATCAAGAGGATCCCAAA CACCAGATATTCTGAAACCTCTCGATCAAGAGGATCCCAAA < 41bp 0.542053594905264 0.759206982133361 0.2901739 0.8463466 prediction 0.434306774456195 Functional Gain - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159146565 chr6:159146568 nonsynonymous SNV 0.511 0 24 hm5C_associated_SNPs_121046 0 0 0 0 1 SYTL3 chr6:159146535 3'AG 159146535 Downstream 34bp
chr16 202965 202965 1 + C A LUAD 202964 + 202944 202984 41 GTCCATGTGGGCCAAGATCTCCACGCAGGCCGACACCATCG GTCCATGTGGGCCAAGATCTCAACGCAGGCCGACACCATCG < 41bp 0.600083331086065 0.817234964100894 0.042837173 0.18182695 prediction 0.434303266029659 Functional Gain - HBZ ENSG00000130656 CDS Human protein_coding chr16:202964 chr16:202965 synonymous SNV . 0 22 hm5C_associated_SNPs_121048 0 0 0 0 1 HBZ chr16:203003 5'GT 203003 Upstream 39bp
chr20 58349450 58349450 1 + A G LUAD 58349447 + 58349427 58349467 41 GCGAACTGCCGCTAAGGAATCTGAGGAGAACAAGGAGAACC GCGAACTGCCGCTAAGGAATCTGGGGAGAACAAGGAGAACC < 41bp 0.562374226364775 0.779522947298518 0.2708683 0.79713345 prediction 0.434297441867486 Functional Gain - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58349447 chr20:58349450 nonsynonymous SNV 0.850 1 24 hm5C_associated_SNPs_121050 0 0 0 0 1 PHACTR3 chr20:58349545 5'GT 58349545 Upstream 96bp
chr1 151553512 151553512 1 + C T CHOL 151553511 + 151553491 151553531 41 CCCGGGCCAAGACAGAGAACCCGGGCAGGTGAGTGAGCGTG CCCGGGCCAAGACAGAGAACCTGGGCAGGTGAGTGAGCGTG < 41bp 0.476759190625699 0.717147414188947 0.24692708 0.30176854 prediction 0.434294828377893 Functional Gain - TUFT1 ENSG00000143367 CDS Human protein_coding chr1:151553511 chr1:151553512 nonsynonymous SNV 0.986 0 22 hm5C_associated_SNPs_121051 0 0 0 0 2 TUFT1 chr1:151553418 3'AG 151553418 Downstream 95bp
chr1 151553512 151553512 1 + C T CHOL 151553511 + 151553491 151553531 41 CCCGGGCCAAGACAGAGAACCCGGGCAGGTGAGTGAGCGTG CCCGGGCCAAGACAGAGAACCTGGGCAGGTGAGTGAGCGTG < 41bp 0.476759190625699 0.717147414188947 0.24692708 0.30176854 prediction 0.434294828377893 Functional Gain - TUFT1 ENSG00000143367 CDS Human protein_coding chr1:151553511 chr1:151553512 nonsynonymous SNV 0.986 0 22 hm5C_associated_SNPs_121051 0 0 0 0 2 TUFT1 chr1:151553518 5'GT 151553518 Upstream 7bp
chr22 47393596 47393596 1 + C T BRCA 47393595 + 47393575 47393615 41 ATGTTAGAAGAACTCGTGAGCCGGATTGATGGTAAGCCAGC ATGTTAGAAGAACTCGTGAGCTGGATTGATGGTAAGCCAGC < 41bp 0.489492196863279 0.717146611977233 0.41709518 0.30416638 prediction 0.434293223954467 Functional Gain - TBC1D22A ENSG00000054611 CDS Human protein_coding chr22:47393595 chr22:47393596 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_121052 0 0 1 0 2 TBC1D22A chr22:47393530 3'AG 47393530 Downstream 67bp
chr22 47393596 47393596 1 + C T BRCA 47393595 + 47393575 47393615 41 ATGTTAGAAGAACTCGTGAGCCGGATTGATGGTAAGCCAGC ATGTTAGAAGAACTCGTGAGCTGGATTGATGGTAAGCCAGC < 41bp 0.489492196863279 0.717146611977233 0.41709518 0.30416638 prediction 0.434293223954467 Functional Gain - TBC1D22A ENSG00000054611 CDS Human protein_coding chr22:47393595 chr22:47393596 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_121052 0 0 1 0 2 TBC1D22A chr22:47393605 5'GT 47393605 Upstream 10bp
chrX 47070524 47070524 1 + C T rs2228658 47070523 + 47070503 47070543 41 TCAGGACCGAGCTGCTGTGGCCACATTCCTGCAGTCTGTGC TCAGGACCGAGCTGCTGTGGCTACATTCCTGCAGTCTGTGC < 41bp 0.454424581340245 0.717145505712086 0.17681292 0.30201846 prediction 0.434291011424172 Functional Gain - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47070523 chrX:47070524 synonymous SNV . 0 22 hm5C_associated_SNPs_121053 2 0 1 0 1 UBA1 chrX:47070435 3'AG 47070435 Downstream 90bp
chr4 129778548 129778548 1 + C T SKCM 129778547 + 129778527 129778567 41 TCACCAAGGTGTCACACATTCCCAGCAGCCGGTGGGCGCTA TCACCAAGGTGTCACACATTCTCAGCAGCCGGTGGGCGCTA < 41bp 0.450291603526453 0.717140857356168 0.04041964 0.02618745 prediction 0.434281714712335 Functional Gain - JADE1 ENSG00000077684 CDS Human protein_coding chr4:129778547 chr4:129778548 nonsynonymous SNV 0.983 4 22 hm5C_associated_SNPs_121057 0 0 1 0 2 JADE1 chr4:129778493 3'AG 129778493 Downstream 56bp
chr4 129778548 129778548 1 + C T SKCM 129778547 + 129778527 129778567 41 TCACCAAGGTGTCACACATTCCCAGCAGCCGGTGGGCGCTA TCACCAAGGTGTCACACATTCTCAGCAGCCGGTGGGCGCTA < 41bp 0.450291603526453 0.717140857356168 0.04041964 0.02618745 prediction 0.434281714712335 Functional Gain - JADE1 ENSG00000077684 CDS Human protein_coding chr4:129778547 chr4:129778548 nonsynonymous SNV 0.983 4 22 hm5C_associated_SNPs_121057 0 0 1 0 2 JADE1 chr4:129778609 5'GT 129778609 Upstream 62bp
chr19 1529760 1529760 1 + C T CESC 1529759 + 1529739 1529779 41 TTCCCAGGGCCCGAGGGGAGCCGGCGGCCAGAGGTGGAGGC TTCCCAGGGCCCGAGGGGAGCTGGCGGCCAGAGGTGGAGGC < 41bp 0.491083018247721 0.717134154498799 0.90453136 0.8951497 prediction 0.434268308997598 Functional Gain - PLK5 ENSG00000185988 CDS Human protein_coding chr19:1529759 chr19:1529760 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_121061 0 0 0 0 2 PLK5 chr19:1529746 3'AG 1529746 Downstream 15bp
chr19 1529760 1529760 1 + C T CESC 1529759 + 1529739 1529779 41 TTCCCAGGGCCCGAGGGGAGCCGGCGGCCAGAGGTGGAGGC TTCCCAGGGCCCGAGGGGAGCTGGCGGCCAGAGGTGGAGGC < 41bp 0.491083018247721 0.717134154498799 0.90453136 0.8951497 prediction 0.434268308997598 Functional Gain - PLK5 ENSG00000185988 CDS Human protein_coding chr19:1529759 chr19:1529760 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_121061 0 0 0 0 2 PLK5 chr19:1529823 5'GT 1529823 Upstream 64bp
chr2 31484520 31484520 1 + C T COAD 31484519 + 31484499 31484539 41 AACCTGGCCGAGATCTATGGCCGGATCGAGCGGGAGCACCA AACCTGGCCGAGATCTATGGCTGGATCGAGCGGGAGCACCA < 41bp 0.60945572854288 0.826587600096214 0.49291638 0.265045 prediction 0.434263743106668 Functional Gain - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31484519 chr2:31484520 nonsynonymous SNV 0.286 3 22 hm5C_associated_SNPs_121062 0 0 1 0 1 EHD3 chr2:31484579 5'GT 31484579 Upstream 60bp
chr17 78211332 78211332 1 + C A rs188773399 78211331 + 78211311 78211351 41 CCTCTCTCAGGACATGGGAGCCGGGCTGGCCGTGGTGCCCC CCTCTCTCAGGACATGGGAGCAGGGCTGGCCGTGGTGCCCC < 41bp 0.613306191239658 0.830437575025243 0.9077053 0.9217112 prediction 0.434262767571171 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78211331 chr17:78211332 synonymous SNV . 0 22 hm5C_associated_SNPs_121063 0 0 1 0 2 SLC26A11 chr17:78211321 3'AG 78211321 Downstream 12bp
chr17 78211332 78211332 1 + C A rs188773399 78211331 + 78211311 78211351 41 CCTCTCTCAGGACATGGGAGCCGGGCTGGCCGTGGTGCCCC CCTCTCTCAGGACATGGGAGCAGGGCTGGCCGTGGTGCCCC < 41bp 0.613306191239658 0.830437575025243 0.9077053 0.9217112 prediction 0.434262767571171 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78211331 chr17:78211332 synonymous SNV . 0 22 hm5C_associated_SNPs_121063 0 0 1 0 2 SLC26A11 chr17:78211393 5'GT 78211393 Upstream 62bp
chr9 138439794 138439794 1 + C A LUAD 138439793 + 138439773 138439813 41 TTTTACTGCAAAGACCAGCGCCGTGGGGGCCTGCGCTACAT TTTTACTGCAAAGACCAGCGCAGTGGGGGCCTGCGCTACAT < 41bp 0.450233518392679 0.717127268910478 0.42132598 0.41251478 prediction 0.434254537820956 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138439793 chr9:138439794 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_121065 0 0 0 0 2 OBP2A chr9:138439717 3'AG 138439717 Downstream 78bp
chr9 138439794 138439794 1 + C A LUAD 138439793 + 138439773 138439813 41 TTTTACTGCAAAGACCAGCGCCGTGGGGGCCTGCGCTACAT TTTTACTGCAAAGACCAGCGCAGTGGGGGCCTGCGCTACAT < 41bp 0.450233518392679 0.717127268910478 0.42132598 0.41251478 prediction 0.434254537820956 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138439793 chr9:138439794 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_121065 0 0 0 0 2 OBP2A chr9:138439827 5'GT 138439827 Upstream 34bp
chr6 46793172 46793172 1 + A G UCEC 46793169 + 46793149 46793189 41 CCTGAGTTTAACTCCATTATCGGACAGCGCCTGGATTTCAG CCTGAGTTTAACTCCATTATCGGGCAGCGCCTGGATTTCAG < 41bp 0.573229747052854 0.79035461951328 0.9170496 0.931982 prediction 0.434249744920851 Functional Gain - MEP1A ENSG00000112818 CDS Human protein_coding chr6:46793169 chr6:46793172 synonymous SNV . 0 24 hm5C_associated_SNPs_121066 0 0 0 0 1 MEP1A chr6:46793230 5'GT 46793230 Upstream 59bp
chr7 100320646 100320646 1 + C T SKCM 100320645 + 100320625 100320665 41 GCGGCCTCAGCTGCTCCACTCCGAACAATCACTGCTGACAC GCGGCCTCAGCTGCTCCACTCTGAACAATCACTGCTGACAC < 41bp 0.588733676435992 0.805857132685107 0.3434649 0.19261497 prediction 0.434246912498228 Functional Gain - EPO ENSG00000130427 CDS Human protein_coding chr7:100320645 chr7:100320646 stopgain 0.941 0 22 hm5C_associated_SNPs_121067 0 0 0 0 2 EPO chr7:100320601 3'AG 100320601 Downstream 46bp
chr7 100320646 100320646 1 + C T SKCM 100320645 + 100320625 100320665 41 GCGGCCTCAGCTGCTCCACTCCGAACAATCACTGCTGACAC GCGGCCTCAGCTGCTCCACTCTGAACAATCACTGCTGACAC < 41bp 0.588733676435992 0.805857132685107 0.3434649 0.19261497 prediction 0.434246912498228 Functional Gain - EPO ENSG00000130427 CDS Human protein_coding chr7:100320645 chr7:100320646 stopgain 0.941 0 22 hm5C_associated_SNPs_121067 0 0 0 0 2 EPO chr7:100320604 3'AG 100320604 Downstream 43bp
chr1 212209261 212209261 1 + C G PAAD 212209257 + 212209237 212209277 41 TCTTCAATTCGGTGCTCCGCCAGCCCCAGCTTGGCGTCCTG TCTTCAATTCGGTGCTCCGCCAGCGCCAGCTTGGCGTCCTG < 41bp 0.421800603345161 0.717123319649127 0.19949558 0.29789597 prediction 0.434246639298253 Functional Gain - DTL ENSG00000143476 CDS Human protein_coding chr1:212209257 chr1:212209261 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_121068 0 0 1 0 1 DTL chr1:212209284 5'GT 212209284 Upstream 24bp
chr2 27303044 27303044 1 + C T UCEC 27303043 + 27303023 27303063 41 TGGTGTGCCTACGTGGTGACCCGGACAGTGAGCTGTGTCCT TGGTGTGCCTACGTGGTGACCTGGACAGTGAGCTGTGTCCT < 41bp 0.572505147524716 0.789626890899184 0.7536238 0.6667674 prediction 0.434243486748936 Functional Gain - EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27303043 chr2:27303044 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_121069 0 0 1 0 2 EMILIN1 chr2:27303019 3'AG 27303019 Downstream 26bp
chr2 27303044 27303044 1 + C T UCEC 27303043 + 27303023 27303063 41 TGGTGTGCCTACGTGGTGACCCGGACAGTGAGCTGTGTCCT TGGTGTGCCTACGTGGTGACCTGGACAGTGAGCTGTGTCCT < 41bp 0.572505147524716 0.789626890899184 0.7536238 0.6667674 prediction 0.434243486748936 Functional Gain - EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27303043 chr2:27303044 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_121069 0 0 1 0 2 EMILIN1 chr2:27303138 5'GT 27303138 Upstream 95bp
chr17 10633181 10633181 1 - A C rs3826448 10633184 - 10633164 10633204 41 GCAGGACTCACCGCCCCGCGCCGTGTTCTCCGAGCCATGGC GCAGGACTCACCGCCCCGCGCCGGGTTCTCCGAGCCATGGC < 41bp 0.622226602471864 0.839342600504212 0.14115545 0.81772935 prediction 0.434231996064697 Functional Gain - TMEM220-AS1 ENSG00000263400 ncRNA_exonic Human protein_coding chr17:10633184 chr17:10633181 . . 0 24 hm5C_associated_SNPs_121071 0 0 0 0 1 TMEM220 chr17:10633097 5'GT 10633097 Upstream 85bp
chr1 155701154 155701154 1 + C T SKCM 155701153 + 155701133 155701173 41 TGTCCGATATGCAGATTGCCCCCGAGGAATTAGCACTTGTT TGTCCGATATGCAGATTGCCCTCGAGGAATTAGCACTTGTT < 41bp 0.611937688953144 0.829052380513656 0.043729484 0.062198758 prediction 0.434229383121023 Functional Gain - DAP3 ENSG00000132676 CDS Human protein_coding chr1:155701153 chr1:155701154 nonsynonymous SNV 0.957 2 22 hm5C_associated_SNPs_121073 0 0 1 0 2 DAP3 chr1:155701147 3'AG 155701147 Downstream 8bp
chr1 155701154 155701154 1 + C T SKCM 155701153 + 155701133 155701173 41 TGTCCGATATGCAGATTGCCCCCGAGGAATTAGCACTTGTT TGTCCGATATGCAGATTGCCCTCGAGGAATTAGCACTTGTT < 41bp 0.611937688953144 0.829052380513656 0.043729484 0.062198758 prediction 0.434229383121023 Functional Gain - DAP3 ENSG00000132676 CDS Human protein_coding chr1:155701153 chr1:155701154 nonsynonymous SNV 0.957 2 22 hm5C_associated_SNPs_121073 0 0 1 0 2 DAP3 chr1:155701206 5'GT 155701206 Upstream 53bp
chr7 150174275 150174275 1 + C T UCEC 150174274 + 150174254 150174294 41 CTCGTCTTCACCTCTCGGCTCCGGGCCCAGCCAGTCACCAA CTCGTCTTCACCTCTCGGCTCTGGGCCCAGCCAGTCACCAA < 41bp 0.530602920657194 0.747711586280271 0.40416017 0.15976572 prediction 0.434217331246154 Functional Gain - GIMAP8 ENSG00000171115 CDS Human protein_coding chr7:150174274 chr7:150174275 nonsynonymous SNV 0.012 2 22 hm5C_associated_SNPs_121077 0 0 0 0 1 GIMAP8 chr7:150174180 3'AG 150174180 Downstream 96bp
chr13 100204476 100204476 1 + T C COAD 100204474 + 100204454 100204494 41 GATCCTCTGGGGAGAAGGATCTTCAGCAGCTATTCCTTTTG GATCCTCTGGGGAGAAGGATCTCCAGCAGCTATTCCTTTTG < 41bp 0.662612546600175 0.879711661898917 0.42175448 0.93516105 prediction 0.434198230597485 Functional Gain - TM9SF2 ENSG00000125304 CDS Human protein_coding chr13:100204474 chr13:100204476 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_121081 0 0 1 0 1 TM9SF2 chr13:100204421 3'AG 100204421 Downstream 56bp
chr6 43109462 43109462 1 + C T LUAD 43109461 + 43109441 43109481 41 GCTGGGACCCTGCATTTTGCCCGGGTGACTCGAGATGACGC GCTGGGACCCTGCATTTTGCCTGGGTGACTCGAGATGACGC < 41bp 0.583623923690681 0.800722630231253 0.47024146 0.27861887 prediction 0.434197413081144 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43109461 chr6:43109462 nonsynonymous SNV 0.977 3 22 hm5C_associated_SNPs_121084 0 0 1 0 2 PTK7 chr6:43109406 3'AG 43109406 Downstream 57bp
chr6 43109462 43109462 1 + C T LUAD 43109461 + 43109441 43109481 41 GCTGGGACCCTGCATTTTGCCCGGGTGACTCGAGATGACGC GCTGGGACCCTGCATTTTGCCTGGGTGACTCGAGATGACGC < 41bp 0.583623923690681 0.800722630231253 0.47024146 0.27861887 prediction 0.434197413081144 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43109461 chr6:43109462 nonsynonymous SNV 0.977 3 22 hm5C_associated_SNPs_121084 0 0 1 0 2 PTK7 chr6:43109555 5'GT 43109555 Upstream 94bp
chr13 79980609 79980609 1 + C A rs2296286 79980608 + 79980588 79980628 41 CAGCGGGAACCCCAGCTCGTCCCCGGTAAGACGGCCGTGGC CAGCGGGAACCCCAGCTCGTCACCGGTAAGACGGCCGTGGC < 41bp 0.571290718226865 0.78838658779809 0.138596 0.2697054 prediction 0.434191739142451 Functional Gain - RBM26-AS1 ENSG00000227354 ncRNA_exonic Human antisense chr13:79980608 chr13:79980609 . . 0 22 hm5C_associated_SNPs_121085 0 0 0 0 1 RBM26-AS1 chr13:79980612 5'GT 79980612 Upstream 4bp
chr5 94772570 94772570 1 + C T ACC 94772569 + 94772549 94772589 41 ACCTCGAATTTAAAGATGGTCCAGGGGGATTATCGCCACGA ACCTCGAATTTAAAGATGGTCTAGGGGGATTATCGCCACGA < 41bp 0.476067539038094 0.717094558671752 0.34168905 0.18754879 prediction 0.434189117343504 Functional Gain - FAM81B ENSG00000153347 CDS Human protein_coding chr5:94772569 chr5:94772570 stopgain 0.999 0 22 hm5C_associated_SNPs_121086 0 0 0 0 2 FAM81B chr5:94772504 3'AG 94772504 Downstream 67bp
chr5 94772570 94772570 1 + C T ACC 94772569 + 94772549 94772589 41 ACCTCGAATTTAAAGATGGTCCAGGGGGATTATCGCCACGA ACCTCGAATTTAAAGATGGTCTAGGGGGATTATCGCCACGA < 41bp 0.476067539038094 0.717094558671752 0.34168905 0.18754879 prediction 0.434189117343504 Functional Gain - FAM81B ENSG00000153347 CDS Human protein_coding chr5:94772569 chr5:94772570 stopgain 0.999 0 22 hm5C_associated_SNPs_121086 0 0 0 0 2 FAM81B chr5:94772610 5'GT 94772610 Upstream 41bp
chr3 140401955 140401955 1 + C T COAD 140401954 + 140401934 140401974 41 TAGCCTCATCGACGCCTGCTCCGAGAGGGCCGCCTCACTCT TAGCCTCATCGACGCCTGCTCTGAGAGGGCCGCCTCACTCT < 41bp 0.467362048616953 0.71709339291906 0.49434412 0.18707415 prediction 0.434186785838119 Functional Gain - TRIM42 ENSG00000155890 CDS Human protein_coding chr3:140401954 chr3:140401955 synonymous SNV . 0 22 hm5C_associated_SNPs_121088 0 0 0 0 1 TRIM42 chr3:140402001 5'GT 140402001 Upstream 47bp
chr15 67709303 67709303 1 + C G LUAD 67709299 + 67709279 67709319 41 TGGTGAAGATCTCTGAGGAGCTGGCGGGCATTTTAGCACAG TGGTGAAGATCTCTGAGGAGCTGGGGGGCATTTTAGCACAG < 41bp 0.42612434342816 0.717090929279326 0.3438279 0.716587 prediction 0.434181858558652 Functional Gain - IQCH ENSG00000103599 CDS Human protein_coding chr15:67709299 chr15:67709303 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_121090 0 0 0 0 2 IQCH chr15:67709269 3'AG 67709269 Downstream 35bp
chr15 67709303 67709303 1 + C G LUAD 67709299 + 67709279 67709319 41 TGGTGAAGATCTCTGAGGAGCTGGCGGGCATTTTAGCACAG TGGTGAAGATCTCTGAGGAGCTGGGGGGCATTTTAGCACAG < 41bp 0.42612434342816 0.717090929279326 0.3438279 0.716587 prediction 0.434181858558652 Functional Gain - IQCH ENSG00000103599 CDS Human protein_coding chr15:67709299 chr15:67709303 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_121090 0 0 0 0 2 IQCH chr15:67709389 5'GT 67709389 Upstream 87bp
chr11 63764641 63764641 1 + C A KIRC 63764637 + 63764617 63764657 41 CTACCTGCGGCTGCTCACCTCGGGCTACCTGCAGCGCGAGA CTACCTGCGGCTGCTCACCTCGGGATACCTGCAGCGCGAGA < 41bp 0.721580056408234 0.938662709349638 0.93897766 0.9432271 prediction 0.434165305882807 Functional Gain - OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63764637 chr11:63764641 synonymous SNV . 0 25 hm5C_associated_SNPs_121098 0 0 1 0 1 OTUB1 chr11:63764716 5'GT 63764716 Upstream 76bp
chr9 77749286 77749286 1 + A G UCEC 77749283 + 77749263 77749303 41 TATAGTGGAAATGCTATTTACTCAACCAAATATTGAACTGA TATAGTGGAAATGCTATTTACTCGACCAAATATTGAACTGA < 41bp 0.493517179616059 0.717081305918191 0.22202936 0.8107376 prediction 0.434162611836381 Functional Gain - OSTF1 ENSG00000134996 CDS Human protein_coding chr9:77749283 chr9:77749286 nonsynonymous SNV 0.979 1 24 hm5C_associated_SNPs_121099 0 0 1 0 2 OSTF1 chr9:77749262 3'AG 77749262 Downstream 25bp
chr9 77749286 77749286 1 + A G UCEC 77749283 + 77749263 77749303 41 TATAGTGGAAATGCTATTTACTCAACCAAATATTGAACTGA TATAGTGGAAATGCTATTTACTCGACCAAATATTGAACTGA < 41bp 0.493517179616059 0.717081305918191 0.22202936 0.8107376 prediction 0.434162611836381 Functional Gain - OSTF1 ENSG00000134996 CDS Human protein_coding chr9:77749283 chr9:77749286 nonsynonymous SNV 0.979 1 24 hm5C_associated_SNPs_121099 0 0 1 0 2 OSTF1 chr9:77749311 5'GT 77749311 Upstream 26bp
chr1 33234269 33234269 1 + C T ESCA 33234268 + 33234248 33234288 41 GATAGTCCTCCCGGACGGGGCCGGATGAAGACAACATCTCC GATAGTCCTCCCGGACGGGGCTGGATGAAGACAACATCTCC < 41bp 0.472725317938116 0.717073251757846 0.3002289 0.14426982 prediction 0.434146503515691 Functional Gain - KIAA1522 ENSG00000162522 CDS Human protein_coding chr1:33234268 chr1:33234269 nonsynonymous SNV 0.300 2 22 hm5C_associated_SNPs_121102 0 0 1 0 1 KIAA1522 chr1:33234253 3'AG 33234253 Downstream 17bp
chr19 1434818 1434818 1 + C T SKCM 1434817 + 1434797 1434837 41 TCCTTCCTACGGGGGTCCCTCCGTGCCAGGGTCGGGGGGCC TCCTTCCTACGGGGGTCCCTCTGTGCCAGGGTCGGGGGGCC < 41bp 0.547422389417828 0.764488398485716 0.8114557 0.27474302 prediction 0.434132018135777 Functional Gain - DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434817 chr19:1434818 synonymous SNV . 0 22 hm5C_associated_SNPs_121106 0 0 1 0 1 DAZAP1 chr19:1434736 3'AG 1434736 Downstream 83bp
chr19 55177872 55177872 1 + C T SKCM 55177871 + 55177851 55177891 41 TCCAGCCCAGCTGCTGACGTCCAGGGAGAAAACTTCTGTGA TCCAGCCCAGCTGCTGACGTCTAGGGAGAAAACTTCTGTGA < 41bp 0.584330402986282 0.801393259164981 0.16155726 0.16471118 prediction 0.434125712357398 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55177871 chr19:55177872 stopgain 0.039 0 22 hm5C_associated_SNPs_121110 0 0 0 0 2 LILRB4 chr19:55177850 3'AG 55177850 Downstream 23bp
chr19 55177872 55177872 1 + C T SKCM 55177871 + 55177851 55177891 41 TCCAGCCCAGCTGCTGACGTCCAGGGAGAAAACTTCTGTGA TCCAGCCCAGCTGCTGACGTCTAGGGAGAAAACTTCTGTGA < 41bp 0.584330402986282 0.801393259164981 0.16155726 0.16471118 prediction 0.434125712357398 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55177871 chr19:55177872 stopgain 0.039 0 22 hm5C_associated_SNPs_121110 0 0 0 0 2 LILRB4 chr19:55177887 5'GT 55177887 Upstream 16bp
chr17 61615542 61615542 1 + C A OV 61615541 + 61615521 61615561 41 AAGGAGTTCATCCGCTTCCACCAGATCCCCAACCCACTGCG AAGGAGTTCATCCGCTTCCACAAGATCCCCAACCCACTGCG < 41bp 0.611975087901999 0.829026862386805 0.29319322 0.228834 prediction 0.434103548969611 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61615541 chr17:61615542 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_121112 0 0 0 0 1 KCNH6 chr17:61615625 5'GT 61615625 Upstream 84bp
chr12 105540296 105540296 1 + A G UCEC 105540293 + 105540273 105540313 41 TGTCCCGATACCTCTATAATCTCAACAATCAGGTGAGTAGG TGTCCCGATACCTCTATAATCTCGACAATCAGGTGAGTAGG < 41bp 0.504328670521249 0.721367984075527 0.09125471 0.4639674 prediction 0.434078627108555 Functional Gain - WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105540293 chr12:105540296 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_121117 0 0 1 0 2 WASHC4 chr12:105540230 3'AG 105540230 Downstream 67bp
chr12 105540296 105540296 1 + A G UCEC 105540293 + 105540273 105540313 41 TGTCCCGATACCTCTATAATCTCAACAATCAGGTGAGTAGG TGTCCCGATACCTCTATAATCTCGACAATCAGGTGAGTAGG < 41bp 0.504328670521249 0.721367984075527 0.09125471 0.4639674 prediction 0.434078627108555 Functional Gain - WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105540293 chr12:105540296 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_121117 0 0 1 0 2 WASHC4 chr12:105540304 5'GT 105540304 Upstream 9bp
chr17 27068498 27068498 1 + A G UCEC 27068495 + 27068475 27068515 41 GGAAGGAGGGATGAGGATGCCGGACTCCCTCGGCCAGTGCA GGAAGGAGGGATGAGGATGCCGGGCTCCCTCGGCCAGTGCA < 41bp 0.584528243396542 0.801565448519612 0.78892416 0.9043362 prediction 0.434074410246139 Functional Gain - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27068495 chr17:27068498 synonymous SNV . 0 24 hm5C_associated_SNPs_121118 0 0 1 0 2 NEK8 chr17:27068431 3'AG 27068431 Downstream 68bp
chr17 27068498 27068498 1 + A G UCEC 27068495 + 27068475 27068515 41 GGAAGGAGGGATGAGGATGCCGGACTCCCTCGGCCAGTGCA GGAAGGAGGGATGAGGATGCCGGGCTCCCTCGGCCAGTGCA < 41bp 0.584528243396542 0.801565448519612 0.78892416 0.9043362 prediction 0.434074410246139 Functional Gain - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27068495 chr17:27068498 synonymous SNV . 0 24 hm5C_associated_SNPs_121118 0 0 1 0 2 NEK8 chr17:27068589 5'GT 27068589 Upstream 92bp
chr6 36995229 36995229 1 + C T COAD 36995228 + 36995208 36995248 41 GGGTCCTCAGCCACGCCTGACCAGAGCCTGATGTGCAGCTT GGGTCCTCAGCCACGCCTGACTAGAGCCTGATGTGCAGCTT < 41bp 0.449798249189162 0.717031985511393 0.3661462 0.122460276 prediction 0.434063971022787 Functional Gain - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36995228 chr6:36995229 stopgain 0.606 0 22 hm5C_associated_SNPs_121121 0 0 0 0 1 FGD2 chr6:36995205 3'AG 36995205 Downstream 25bp
chr16 1292161 1292161 1 + C A STAD 1292160 + 1292140 1292180 41 AGCTGGGGCGAGGGCTGTGCCCAGCCCAACCGGCCTGGCAT AGCTGGGGCGAGGGCTGTGCCAAGCCCAACCGGCCTGGCAT < 41bp 0.596988427037688 0.81402039663352 0.2652653 0.5928727 prediction 0.434063939191664 Functional Gain - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1292160 chr16:1292161 nonsynonymous SNV 0.011 1 22 hm5C_associated_SNPs_121122 0 0 0 0 1 TPSAB1 chr16:1292077 3'AG 1292077 Downstream 85bp
chr7 107559678 107559678 1 + T G UCEC 107559676 + 107559656 107559696 41 TAGAGAAGCAAATCTTGCTGCGTCATTTGGCAAATCAATCA TAGAGAAGCAAATCTTGCTGCGGCATTTGGCAAATCAATCA < 41bp 0.411283008276838 0.717029989877185 0.14327279 0.28494585 prediction 0.43405997975437 Functional Gain - DLD ENSG00000091140 CDS Human protein_coding chr7:107559676 chr7:107559678 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_121123 0 0 1 0 1 DLD chr7:107559639 3'AG 107559639 Downstream 40bp
chr1 196659317 196659317 1 + A G BRCA 196659314 + 196659294 196659334 41 GCTCTTCCAAAAGCGCAGACCACAGTTACATGTATGGAGAA GCTCTTCCAAAAGCGCAGACCACGGTTACATGTATGGAGAA < 41bp 0.578676973115873 0.795701382468392 0.13873672 0.2850559 prediction 0.434048818705038 Functional Gain - CFH ENSG00000000971 CDS Human protein_coding chr1:196659314 chr1:196659317 synonymous SNV . 0 24 hm5C_associated_SNPs_121125 0 0 1 0 1 CFH chr1:196659369 5'GT 196659369 Upstream 53bp
chr20 62505042 62505042 1 + C G HNSC 62505038 + 62505018 62505058 41 CAGGTGGAAGAGGAAATTGTCACTCTGCGCCAGGTCCTGGC CAGGTGGAAGAGGAAATTGTCACTGTGCGCCAGGTCCTGGC < 41bp 0.427590137439823 0.717023689813623 0.25704104 0.11627737 prediction 0.434047379627247 Functional Gain - TPD52L2 ENSG00000101150 CDS Human protein_coding chr20:62505038 chr20:62505042 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_121126 0 0 1 0 1 TPD52L2 chr20:62505021 3'AG 62505021 Downstream 22bp
chr9 108483838 108483838 1 + C G OV 108483837 + 108483817 108483857 41 GGTATATTACATTTTTTTGCCCGCATGACCTAGTTTCCCAG GGTATATTACATTTTTTTGCCGGCATGACCTAGTTTCCCAG < 41bp 0.415532687111649 0.717020084033554 0.099351436 0.387464 prediction 0.434040168067108 Functional Gain - TMEM38B ENSG00000095209 CDS Human protein_coding chr9:108483837 chr9:108483838 nonsynonymous SNV 0.582 4 22 hm5C_associated_SNPs_121128 0 0 1 0 1 TMEM38B chr9:108483818 3'AG 108483818 Downstream 21bp
chr9 127055259 127055259 1 + C T rs534681996 127055258 + 127055238 127055278 41 TGCTGGGAGGCAGCTCATTTCCGGCAGGAGGAGCAGAGCCT TGCTGGGAGGCAGCTCATTTCTGGCAGGAGGAGCAGAGCCT < 41bp 0.533608698725432 0.75062156569415 0.41221285 0.22935364 prediction 0.434025733937435 Functional Gain - NEK6 ENSG00000119408 CDS Human protein_coding chr9:127055258 chr9:127055259 nonsynonymous SNV 0.006 2 22 hm5C_associated_SNPs_121134 0 0 0 0 1 NEK6 chr9:127055292 5'GT 127055292 Upstream 34bp
chr11 18288489 18288489 1 + C T SKCM 18288488 + 18288468 18288508 41 TTGGTCCTGGGTGTCAGCAGCCGAAGCTTCTTTTCGTTCCT TTGGTCCTGGGTGTCAGCAGCTGAAGCTTCTTTTCGTTCCT < 41bp 0.478420259065966 0.717012591990472 0.3425346 0.8303453 prediction 0.434025183980945 Functional Gain - SAA1 ENSG00000173432 CDS Human protein_coding chr11:18288488 chr11:18288489 stopgain 0.000 0 22 hm5C_associated_SNPs_121135 0 0 0 0 2 SAA1 chr11:18288431 3'AG 18288431 Downstream 59bp
chr11 18288489 18288489 1 + C T SKCM 18288488 + 18288468 18288508 41 TTGGTCCTGGGTGTCAGCAGCCGAAGCTTCTTTTCGTTCCT TTGGTCCTGGGTGTCAGCAGCTGAAGCTTCTTTTCGTTCCT < 41bp 0.478420259065966 0.717012591990472 0.3425346 0.8303453 prediction 0.434025183980945 Functional Gain - SAA1 ENSG00000173432 CDS Human protein_coding chr11:18288488 chr11:18288489 stopgain 0.000 0 22 hm5C_associated_SNPs_121135 0 0 0 0 2 SAA1 chr11:18288525 5'GT 18288525 Upstream 37bp
chr22 29703048 29703048 1 + A G rs376400273 29703045 + 29703025 29703065 41 GAGGAGGCCGCGGCGCGGGACGCATAGAGCTGCGGCTCGGG GAGGAGGCCGCGGCGCGGGACGCGTAGAGCTGCGGCTCGGG < 41bp 0.524821834749597 0.741833060445594 0.33948475 0.37699294 prediction 0.434022451391995 Functional Gain - GAS2L1 ENSG00000185340 UTR5 Human protein_coding chr22:29703045 chr22:29703048 . . 0 24 hm5C_associated_SNPs_121136 0 0 1 0 1 GAS2L1 chr22:29703143 5'GT 29703143 Upstream 96bp
chr19 15807806 15807806 1 + A G SKCM 15807803 + 15807783 15807823 41 ACTTCCGGTTCCTGCCAGACCACACTGAGCCCCGCAGGAAG ACTTCCGGTTCCTGCCAGACCACGCTGAGCCCCGCAGGAAG < 41bp 0.595719373219914 0.812728208497613 0.081562966 0.26727897 prediction 0.434017670555398 Functional Gain - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15807803 chr19:15807806 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_121137 0 0 1 0 1 CYP4F12 chr19:15807718 3'AG 15807718 Downstream 89bp
chr16 8729070 8729070 1 + C A LGG 8729066 + 8729046 8729086 41 CTGGCAGACTACATCCTGTTCCGACAGGACCTCTTCCGAGG CTGGCAGACTACATCCTGTTCCGAAAGGACCTCTTCCGAGG < 41bp 0.300680925371125 0.716994936487791 0.08170968 0.17994872 prediction 0.433989872975582 Functional Gain - METTL22 ENSG00000067365 CDS Human protein_coding chr16:8729066 chr16:8729070 nonsynonymous SNV 0.330 0 25 hm5C_associated_SNPs_121145 0 0 1 0 2 METTL22 chr16:8729025 3'AG 8729025 Downstream 46bp
chr16 8729070 8729070 1 + C A LGG 8729066 + 8729046 8729086 41 CTGGCAGACTACATCCTGTTCCGACAGGACCTCTTCCGAGG CTGGCAGACTACATCCTGTTCCGAAAGGACCTCTTCCGAGG < 41bp 0.300680925371125 0.716994936487791 0.08170968 0.17994872 prediction 0.433989872975582 Functional Gain - METTL22 ENSG00000067365 CDS Human protein_coding chr16:8729066 chr16:8729070 nonsynonymous SNV 0.330 0 25 hm5C_associated_SNPs_121145 0 0 1 0 2 METTL22 chr16:8729169 5'GT 8729169 Upstream 100bp
chr17 78084551 78084551 1 + C T COAD 78084550 + 78084530 78084570 41 GGCCCGGGTCCACTGCCTTCCCCGACTTCACCAACCCCACA GGCCCGGGTCCACTGCCTTCCTCGACTTCACCAACCCCACA < 41bp 0.611312130629072 0.828305267741598 0.11220476 0.2802248 prediction 0.433986274225052 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78084550 chr17:78084551 nonsynonymous SNV 0.930 5 22 hm5C_associated_SNPs_121146 0 0 0 0 2 GAA chr17:78084526 3'AG 78084526 Downstream 26bp
chr17 78084551 78084551 1 + C T COAD 78084550 + 78084530 78084570 41 GGCCCGGGTCCACTGCCTTCCCCGACTTCACCAACCCCACA GGCCCGGGTCCACTGCCTTCCTCGACTTCACCAACCCCACA < 41bp 0.611312130629072 0.828305267741598 0.11220476 0.2802248 prediction 0.433986274225052 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78084550 chr17:78084551 nonsynonymous SNV 0.930 5 22 hm5C_associated_SNPs_121146 0 0 0 0 2 GAA chr17:78084639 5'GT 78084639 Upstream 89bp
chr22 24121441 24121441 1 + C T rs142328740 24121440 + 24121420 24121460 41 ATGCAGCCCTGCCCAGTAGCCCGGCACCTGCCCCTGCCACG ATGCAGCCCTGCCCAGTAGCCTGGCACCTGCCCCTGCCACG < 41bp 0.517243262146645 0.734232235330059 0.8501236 0.779724 prediction 0.433977946366828 Functional Gain - MMP11 ENSG00000099953 CDS Human protein_coding chr22:24121440 chr22:24121441 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_121148 0 0 1 0 1 MMP11 chr22:24121374 3'AG 24121374 Downstream 68bp
chr20 2945759 2945759 1 + C T rs1178027 2945758 + 2945738 2945778 41 CACCAAATGGAACGTGGCTTCCAGATAACCAGTTCACGGAT CACCAAATGGAACGTGGCTTCTAGATAACCAGTTCACGGAT < 41bp 0.552209726800678 0.769197495550001 0.38785663 0.238707 prediction 0.433975537498646 Functional Gain - PTPRA ENSG00000132670 CDS Human protein_coding chr20:2945758 chr20:2945759 nonsynonymous SNV 0.987 0 22 hm5C_associated_SNPs_121149 0 0 1 0 1 PTPRA chr20:2945848 5'GT 2945848 Upstream 90bp
chr9 126135450 126135450 1 + C T UCEC 126135449 + 126135429 126135469 41 GTTCCGCGAGGGTCCCCCCGCCGCGTTCAGCGGGCACAACG GTTCCGCGAGGGTCCCCCCGCTGCGTTCAGCGGGCACAACG < 41bp 0.553705605817494 0.770685313531558 0.2368255 0.17167535 prediction 0.433959415428129 Functional Gain - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126135449 chr9:126135450 synonymous SNV . 0 22 hm5C_associated_SNPs_121152 0 0 0 0 1 CRB2 chr9:126135413 3'AG 126135413 Downstream 38bp
chrX 2945508 2945508 1 + C A LUAD 2945507 + 2945487 2945527 41 TATAGGCGGAGGGATCTTGTCCCAGGACAGGTATGGAAACA TATAGGCGGAGGGATCTTGTCACAGGACAGGTATGGAAACA < 41bp 0.444656781558789 0.716978186460793 0.17934653 0.6162059 prediction 0.433956372921587 Functional Gain - ARSH ENSG00000205667 CDS Human protein_coding chrX:2945507 chrX:2945508 synonymous SNV . 0 22 hm5C_associated_SNPs_121153 0 0 0 0 1 ARSH chrX:2945516 5'GT 2945516 Upstream 9bp
chr12 113435356 113435356 1 + T G COAD 113435353 + 113435333 113435373 41 AAAAATCAAGGATTTACCCTCGCTGTCTCCGTATGCCCTGG AAAAATCAAGGATTTACCCTCGCGGTCTCCGTATGCCCTGG < 41bp 0.314095791278799 0.716977734866652 0.12179637 0.5421928 prediction 0.433955469733305 Functional Gain - OAS2 ENSG00000111335 CDS Human protein_coding chr12:113435353 chr12:113435356 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_121154 0 0 1 0 1 OAS2 chr12:113435325 3'AG 113435325 Downstream 32bp
chr4 103806379 103806379 1 + A G COAD 103806376 + 103806356 103806396 41 CACATCTACATGTTTAGTTTCAGAATGGCTTCGGTTATTGC CACATCTACATGTTTAGTTTCAGGATGGCTTCGGTTATTGC < 41bp 0.536179002674465 0.753152514603925 0.7873385 0.90427166 prediction 0.433947023858921 Functional Gain - CISD2 ENSG00000145354 CDS Human protein_coding chr4:103806376 chr4:103806379 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_121155 0 0 1 0 1 CISD2 chr4:103806373 3'AG 103806373 Downstream 7bp
chrX 117880927 117880927 1 + C T COAD 117880926 + 117880906 117880946 41 TCTAACCTTAGAAAATAGCTCCGGAAACTCGTCGTTCAATA TCTAACCTTAGAAAATAGCTCTGGAAACTCGTCGTTCAATA < 41bp 0.573951804024442 0.790923474556783 0.21089616 0.12633604 prediction 0.433943341064681 Functional Gain - IL13RA1 ENSG00000131724 CDS Human protein_coding chrX:117880926 chrX:117880927 nonsynonymous SNV 0.963 1 22 hm5C_associated_SNPs_121156 0 0 1 0 1 IL13RA1 chrX:117880917 3'AG 117880917 Downstream 11bp
chr2 97361395 97361395 1 + A G UCEC 97361392 + 97361372 97361412 41 TCTGAGTCTGTCCTAGTCCTCACAGTGGTAAGAGGCCCCAG TCTGAGTCTGTCCTAGTCCTCACGGTGGTAAGAGGCCCCAG < 41bp 0.497867947025539 0.716957921335989 0.44874188 0.7913029 prediction 0.433915842671978 Functional Gain - FER1L5 ENSG00000249715 ncRNA_exonic Human protein_coding chr2:97361392 chr2:97361395 . . 0 24 hm5C_associated_SNPs_121159 0 0 0 0 2 FER1L5 chr2:97361395 5'GT 97361395 Upstream 1bp
chr2 97361395 97361395 1 + A G UCEC 97361392 + 97361372 97361412 41 TCTGAGTCTGTCCTAGTCCTCACAGTGGTAAGAGGCCCCAG TCTGAGTCTGTCCTAGTCCTCACGGTGGTAAGAGGCCCCAG < 41bp 0.497867947025539 0.716957921335989 0.44874188 0.7913029 prediction 0.433915842671978 Functional Gain - FER1L5 ENSG00000249715 ncRNA_exonic Human protein_coding chr2:97361392 chr2:97361395 . . 0 24 hm5C_associated_SNPs_121159 0 0 0 0 2 FER1L5 chr2:97361398 5'GT 97361398 Upstream 4bp
chr3 46937356 46937356 1 + C T UCEC 46937355 + 46937335 46937375 41 GCACCCACTGGCAGCAGGTACCGAGGTACGTCTCTGCTTCC GCACCCACTGGCAGCAGGTACTGAGGTACGTCTCTGCTTCC < 41bp 0.487963639099512 0.716950355097458 0.90032023 0.7627442 prediction 0.433900710194915 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46937355 chr3:46937356 stopgain 0.584 0 22 hm5C_associated_SNPs_121163 1 0 0 0 1 PTH1R chr3:46937359 5'GT 46937359 Upstream 4bp
chr2 85857868 85857868 1 + C T UCEC 85857867 + 85857847 85857887 41 CTATCTAATGTTCCTCCTCTCCGGAACTACTTTCTGGAAGA CTATCTAATGTTCCTCCTCTCTGGAACTACTTTCTGGAAGA < 41bp 0.593521091629103 0.810458533625679 0.31263685 0.21124816 prediction 0.433874883993152 Functional Gain - USP39 ENSG00000168883 CDS Human protein_coding chr2:85857867 chr2:85857868 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_121168 0 0 1 0 1 USP39 chr2:85857844 3'AG 85857844 Downstream 25bp
chr2 119739063 119739063 1 + T C rs6761637 119739061 + 119739041 119739081 41 GCCCAGGGGAGTAAAGGTGACTTCGGGAGGCCAGGCCCACC GCCCAGGGGAGTAAAGGTGACTCCGGGAGGCCAGGCCCACC < 41bp 0.623937820838876 0.840866116028149 0.8923157 0.8181298 prediction 0.433856590378547 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119739061 chr2:119739063 nonsynonymous SNV 0.012 1 23 hm5C_associated_SNPs_121173 0 0 0 0 2 MARCO chr2:119738985 3'AG 119738985 Downstream 79bp
chr2 119739063 119739063 1 + T C rs6761637 119739061 + 119739041 119739081 41 GCCCAGGGGAGTAAAGGTGACTTCGGGAGGCCAGGCCCACC GCCCAGGGGAGTAAAGGTGACTCCGGGAGGCCAGGCCCACC < 41bp 0.623937820838876 0.840866116028149 0.8923157 0.8181298 prediction 0.433856590378547 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119739061 chr2:119739063 nonsynonymous SNV 0.012 1 23 hm5C_associated_SNPs_121173 0 0 0 0 2 MARCO chr2:119739083 5'GT 119739083 Upstream 21bp
chr13 58298818 58298818 1 + A G UCEC 58298815 + 58298795 58298835 41 TTCTGACAGGTGCTGGATGCCACAGTTCCCTGCAGCCAATC TTCTGACAGGTGCTGGATGCCACGGTTCCCTGCAGCCAATC < 41bp 0.547781651326104 0.764703013898083 0.26414263 0.2747304 prediction 0.433842725143959 Functional Gain - PCDH17 ENSG00000118946 CDS Human protein_coding chr13:58298815 chr13:58298818 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_121175 0 0 0 0 1 PCDH17 chr13:58298746 3'AG 58298746 Downstream 73bp
chr9 95796895 95796895 1 + T C LGG 95796893 + 95796873 95796913 41 GCTGTCAGAGAGCGGTGAGACCTGGAGCGAGGTGTGGGCCG GCTGTCAGAGAGCGGTGAGACCCGGAGCGAGGTGTGGGCCG < 41bp 0.619051679706121 0.835970804842825 0.47872424 0.86520207 prediction 0.43383825027341 Functional Gain - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95796893 chr9:95796895 nonsynonymous SNV 0.259 2 23 hm5C_associated_SNPs_121176 0 0 0 0 3 FGD3 chr9:95796823 3'AG 95796823 Downstream 73bp
chr9 95796895 95796895 1 + T C LGG 95796893 + 95796873 95796913 41 GCTGTCAGAGAGCGGTGAGACCTGGAGCGAGGTGTGGGCCG GCTGTCAGAGAGCGGTGAGACCCGGAGCGAGGTGTGGGCCG < 41bp 0.619051679706121 0.835970804842825 0.47872424 0.86520207 prediction 0.43383825027341 Functional Gain - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95796893 chr9:95796895 nonsynonymous SNV 0.259 2 23 hm5C_associated_SNPs_121176 0 0 0 0 3 FGD3 chr9:95796826 3'AG 95796826 Downstream 70bp
chr9 95796895 95796895 1 + T C LGG 95796893 + 95796873 95796913 41 GCTGTCAGAGAGCGGTGAGACCTGGAGCGAGGTGTGGGCCG GCTGTCAGAGAGCGGTGAGACCCGGAGCGAGGTGTGGGCCG < 41bp 0.619051679706121 0.835970804842825 0.47872424 0.86520207 prediction 0.43383825027341 Functional Gain - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95796893 chr9:95796895 nonsynonymous SNV 0.259 2 23 hm5C_associated_SNPs_121176 0 0 0 0 3 FGD3 chr9:95796963 5'GT 95796963 Upstream 69bp
chrX 138612946 138612946 1 + T C LUAD 138612944 + 138612924 138612964 41 ATGCAGCGCGTGAACATGATCATGGCAGAATCACCAGGCCT ATGCAGCGCGTGAACATGATCACGGCAGAATCACCAGGCCT < 41bp 0.581976413097907 0.798886681418105 0.3228828 0.28461102 prediction 0.433820536640396 Functional Gain - F9 ENSG00000101981 CDS Human protein_coding chrX:138612944 chrX:138612946 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_121179 0 0 0 0 1 F9 chrX:138613011 5'GT 138613011 Upstream 66bp
chr1 11832289 11832289 1 + C A rs61773952 11832288 + 11832268 11832308 41 CCTGGGTGGCCCCACTGAGCCCCCAGCACCAGAGAGCTTGG CCTGGGTGGCCCCACTGAGCCACCAGCACCAGAGAGCTTGG < 41bp 0.586447582519207 0.803333005605544 0.10418728 0.21589491 prediction 0.433770846172673 Functional Gain - C1orf167 ENSG00000215910 CDS Human protein_coding chr1:11832288 chr1:11832289 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_121186 0 0 0 0 1 C1orf167 chr1:11832316 5'GT 11832316 Upstream 28bp
chr12 100796212 100796212 1 + T C rs148882860 100796209 + 100796189 100796229 41 ATATCCAATGAGGAGAAGACCTATATAGAGACAAGCATAGG ATATCCAATGAGGAGAAGACCTACATAGAGACAAGCATAGG < 41bp 0.545923759309001 0.762808636978149 0.30152327 0.8868412 prediction 0.433769755338297 Functional Gain - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100796209 chr12:100796212 synonymous SNV . 0 24 hm5C_associated_SNPs_121187 1 0 0 0 1 SLC17A8 chr12:100796118 3'AG 100796118 Downstream 95bp
chr1 17657635 17657635 1 + C A rs202100380 17657631 + 17657611 17657651 41 GAAAGTGGCCAGTGGTAGCACAGGCGACCAGAAGGTGAGTG GAAAGTGGCCAGTGGTAGCACAGGAGACCAGAAGGTGAGTG < 41bp 0.717121141517715 0.933998490691203 0.31496567 0.332788 prediction 0.433754698346978 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17657631 chr1:17657635 synonymous SNV . 0 25 hm5C_associated_SNPs_121193 0 0 0 0 1 PADI4 chr1:17657644 5'GT 17657644 Upstream 10bp
chr1 22140950 22140950 1 + C G KIRC 22140946 + 22140926 22140966 41 GGGGACGGGCTGCTGCTGCGCTCGCACGCCGCATCGCGCAG GGGGACGGGCTGCTGCTGCGCTCGGACGCCGCATCGCGCAG < 41bp 0.652638139432142 0.869514140747786 0.06955007 0.12009865 prediction 0.433752002631287 Functional Gain - LDLRAD2 ENSG00000187942 CDS Human protein_coding chr1:22140946 chr1:22140950 nonsynonymous SNV 0.601 4 25 hm5C_associated_SNPs_121194 0 0 0 0 1 LDLRAD2 chr1:22140891 3'AG 22140891 Downstream 60bp
chr6 160174535 160174535 1 + C T UCEC 160174534 + 160174514 160174554 41 GCGAAGTGTCGAATGCTTATCCAGGAGAATCAAGAGCTTGG GCGAAGTGTCGAATGCTTATCTAGGAGAATCAAGAGCTTGG < 41bp 0.491828237560062 0.716875960713586 0.86726046 0.5234705 prediction 0.433751921427173 Functional Gain - WTAP ENSG00000146457 CDS Human protein_coding chr6:160174534 chr6:160174535 stopgain 1.000 1 22 hm5C_associated_SNPs_121195 0 0 1 0 1 WTAP chr6:160174492 3'AG 160174492 Downstream 44bp
chr15 59373180 59373180 1 + C T GBM 59373179 + 59373159 59373199 41 ATCATCAAGCTTCTGCCTGCCCGCATTCTCATGGAAACCCC ATCATCAAGCTTCTGCCTGCCTGCATTCTCATGGAAACCCC < 41bp 0.621237053966731 0.838111251985183 0.007889926 0.10278976 prediction 0.433748396036903 Functional Gain - RNF111 ENSG00000157450 CDS Human protein_coding chr15:59373179 chr15:59373180 nonsynonymous SNV 0.862 3 22 hm5C_associated_SNPs_121196 0 0 0 0 1 RNF111 chr15:59373135 3'AG 59373135 Downstream 46bp
chr19 45848851 45848851 1 + C G LUSC 45848850 + 45848830 45848870 41 GCAGGGCTGGGCCCAGAGCGCCTGAGCCCTGAGGAGCTGGT GCAGGGCTGGGCCCAGAGCGCGTGAGCCCTGAGGAGCTGGT < 41bp 0.39581438519398 0.716869617202243 0.23334971 0.6125047 prediction 0.433739234404486 Functional Gain - KLC3 ENSG00000104892 CDS Human protein_coding chr19:45848850 chr19:45848851 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_121202 0 0 1 0 1 KLC3 chr19:45848792 3'AG 45848792 Downstream 60bp
chr16 81946258 81946258 1 + C T SKCM 81946257 + 81946237 81946277 41 AGGACATGCTGATGAGGATTCCCCGGGACGGGGCCTTCCTG AGGACATGCTGATGAGGATTCTCCGGGACGGGGCCTTCCTG < 41bp 0.442216003653438 0.716867646143201 0.38076922 0.8140714 prediction 0.433735292286401 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81946257 chr16:81946258 nonsynonymous SNV 0.829 5 22 hm5C_associated_SNPs_121205 0 0 0 0 2 PLCG2 chr16:81946202 3'AG 81946202 Downstream 57bp
chr16 81946258 81946258 1 + C T SKCM 81946257 + 81946237 81946277 41 AGGACATGCTGATGAGGATTCCCCGGGACGGGGCCTTCCTG AGGACATGCTGATGAGGATTCTCCGGGACGGGGCCTTCCTG < 41bp 0.442216003653438 0.716867646143201 0.38076922 0.8140714 prediction 0.433735292286401 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81946257 chr16:81946258 nonsynonymous SNV 0.829 5 22 hm5C_associated_SNPs_121205 0 0 0 0 2 PLCG2 chr16:81946321 5'GT 81946321 Upstream 64bp
chr8 17417930 17417930 1 + C A UVM 17417929 + 17417909 17417949 41 GGTAACCTCGAAGAGTGAGTCCCAGGTCACCATGCTGCAGA GGTAACCTCGAAGAGTGAGTCACAGGTCACCATGCTGCAGA < 41bp 0.45021825342921 0.716865461404734 0.08104992 0.3806615 prediction 0.433730922809467 Functional Gain - SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17417929 chr8:17417930 synonymous SNV . 0 22 hm5C_associated_SNPs_121207 0 0 1 0 1 SLC7A2 chr8:17417837 3'AG 17417837 Downstream 94bp
chr22 44582511 44582511 1 + C T rs74385495 44582510 + 44582490 44582530 41 GACACCATCTGTGGTCTTGCCCGGAAGACCTGGTGAGGTGC GACACCATCTGTGGTCTTGCCTGGAAGACCTGGTGAGGTGC < 41bp 0.550357249719868 0.767211142588711 0.84774137 0.5544019 prediction 0.433707785737686 Functional Gain - PARVG ENSG00000138964 intronic Human protein_coding chr22:44582510 chr22:44582511 . . 0 22 hm5C_associated_SNPs_121210 0 0 0 0 1 PARVG chr22:44582457 3'AG 44582457 Downstream 55bp
chr15 43663591 43663591 1 + T C CESC 43663589 + 43663569 43663609 41 TCTTGGCTCTGAGCGGGTACCCTGGGTCCATTTTCACCTGG TCTTGGCTCTGAGCGGGTACCCCGGGTCCATTTTCACCTGG < 41bp 0.591797825714042 0.808638949340024 0.84529996 0.9035026 prediction 0.433682247251963 Functional Gain - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43663589 chr15:43663591 synonymous SNV . 0 23 hm5C_associated_SNPs_121215 0 0 1 0 1 TUBGCP4 chr15:43663630 5'GT 43663630 Upstream 40bp
chr21 48081715 48081715 1 + C A UCEC 48081714 + 48081694 48081734 41 GTCATCTGCTTGACCCAGACCCTGAGGGGCGAGCTGCGCTT GTCATCTGCTTGACCCAGACCATGAGGGGCGAGCTGCGCTT < 41bp 0.474515743744779 0.716840365243863 0.15707472 0.28280365 prediction 0.433680730487726 Functional Gain - PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48081714 chr21:48081715 nonsynonymous SNV 0.446 0 22 hm5C_associated_SNPs_121216 0 0 1 0 1 PRMT2 chr21:48081712 3'AG 48081712 Downstream 4bp
chr10 115341888 115341888 1 + C T LGG 115341887 + 115341867 115341907 41 GCTCACTGCTGCCCACTGCACCGAGTAGGTGCCGCTGGGAG GCTCACTGCTGCCCACTGCACTGAGTAGGTGCCGCTGGGAG < 41bp 0.542735262089058 0.75957008152454 0.24679011 0.23082149 prediction 0.433669638870963 Functional Gain - HABP2 ENSG00000148702 CDS Human protein_coding chr10:115341887 chr10:115341888 synonymous SNV . 0 22 hm5C_associated_SNPs_121221 0 0 0 0 1 HABP2 chr10:115341890 5'GT 115341890 Upstream 3bp
chr7 137761289 137761289 1 + C T GBM 137761288 + 137761268 137761308 41 GATCTCAGTGCTGCAAGTCACCGCATACCTCTAAGTGATGG GATCTCAGTGCTGCAAGTCACTGCATACCTCTAAGTGATGG < 41bp 0.476618541016451 0.716833533865672 0.056996614 0.20912337 prediction 0.433667067731344 Functional Gain - AKR1D1 ENSG00000122787 CDS Human protein_coding chr7:137761288 chr7:137761289 nonsynonymous SNV 0.974 0 22 hm5C_associated_SNPs_121223 0 0 0 0 2 AKR1D1 chr7:137761195 3'AG 137761195 Downstream 95bp
chr7 137761289 137761289 1 + C T GBM 137761288 + 137761268 137761308 41 GATCTCAGTGCTGCAAGTCACCGCATACCTCTAAGTGATGG GATCTCAGTGCTGCAAGTCACTGCATACCTCTAAGTGATGG < 41bp 0.476618541016451 0.716833533865672 0.056996614 0.20912337 prediction 0.433667067731344 Functional Gain - AKR1D1 ENSG00000122787 CDS Human protein_coding chr7:137761288 chr7:137761289 nonsynonymous SNV 0.974 0 22 hm5C_associated_SNPs_121223 0 0 0 0 2 AKR1D1 chr7:137761357 5'GT 137761357 Upstream 69bp
chr19 49867899 49867899 1 + T C rs2303757 49867897 + 49867877 49867917 41 CTGCTGCTGCTCCTCTCTACCCTGGTGATCCCCTCCGCTGC CTGCTGCTGCTCCTCTCTACCCCGGTGATCCCCTCCGCTGC < 41bp 0.597771791306662 0.81459762456439 0.85345733 0.89285326 prediction 0.433651666515457 Functional Gain - DKKL1 ENSG00000104901 CDS Human protein_coding chr19:49867897 chr19:49867899 nonsynonymous SNV 0.460 1 23 hm5C_associated_SNPs_121227 0 0 0 0 1 DKKL1 chr19:49867839 3'AG 49867839 Downstream 61bp
chr6 43008794 43008794 1 + C T LUAD 43008793 + 43008773 43008813 41 TGGATCTGCTGGTCAATGTGCCGGGCGAACTGCTCACTCAC TGGATCTGCTGGTCAATGTGCTGGGCGAACTGCTCACTCAC < 41bp 0.504206300454811 0.721031182052469 0.9413954 0.92424315 prediction 0.433649763195316 Functional Gain - CUL7 ENSG00000044090 CDS Human protein_coding chr6:43008793 chr6:43008794 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_121228 0 0 1 0 1 CUL7 chr6:43008862 5'GT 43008862 Upstream 69bp
chr17 72938000 72938000 1 + C T SKCM 72937999 + 72937979 72938019 41 CCCACATGTCCGGCCAGGTTCCCTAGTGCTCTTCGGCAGCT CCCACATGTCCGGCCAGGTTCTCTAGTGCTCTTCGGCAGCT < 41bp 0.457367374014298 0.716810754978308 0.07832122 0.85810685 prediction 0.433621509956616 Functional Gain - OTOP3 ENSG00000182938 CDS Human protein_coding chr17:72937999 chr17:72938000 synonymous SNV . 0 22 hm5C_associated_SNPs_121235 0 0 0 0 1 OTOP3 chr17:72937996 3'AG 72937996 Downstream 5bp
chr9 136216806 136216806 1 + A G HNSC 136216803 + 136216783 136216823 41 GCTGGCCCACAAGTACAGACCAGAGACAAAGCAAGAGAAGA GCTGGCCCACAAGTACAGACCAGGGACAAAGCAAGAGAAGA < 41bp 0.537305893129818 0.75407925216072 0.7711109 0.8014139 prediction 0.433546718061804 Functional Gain - RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216803 chr9:136216806 nonsynonymous SNV 0.164 2 24 hm5C_associated_SNPs_121243 0 0 0 0 1 RPL7A chr9:136216767 3'AG 136216767 Downstream 40bp
chr4 100463127 100463127 1 + A G STAD 100463124 + 100463104 100463144 41 TAATATGAAAATACCTGTTGCAGAATATTTCAGCAAACCAA TAATATGAAAATACCTGTTGCAGGATATTTCAGCAAACCAA < 41bp 0.558389932158374 0.775155780093933 0.0655652 0.2489543 prediction 0.433531695871117 Functional Gain - C4orf17 ENSG00000138813 CDS Human protein_coding chr4:100463124 chr4:100463127 nonsynonymous SNV 0.967 2 24 hm5C_associated_SNPs_121247 0 0 0 0 1 C4orf17 chr4:100463067 3'AG 100463067 Downstream 61bp
chr10 101605425 101605425 1 + A G UCEC 101605422 + 101605402 101605442 41 GGAGCTGGAAAGTCATCCCTCACAAACTGCCTCTTCAGAAT GGAGCTGGAAAGTCATCCCTCACGAACTGCCTCTTCAGAAT < 41bp 0.574107943087332 0.790869763281231 0.108911216 0.21864045 prediction 0.433523640387798 Functional Gain - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101605422 chr10:101605425 synonymous SNV . 0 24 hm5C_associated_SNPs_121249 0 0 1 0 1 ABCC2 chr10:101605381 3'AG 101605381 Downstream 45bp
chr22 32257418 32257418 1 + A G COAD 32257415 + 32257395 32257435 41 AGCATCGTCCGCCTTCTACCCTCAGGTTAGTCCAACTCCAG AGCATCGTCCGCCTTCTACCCTCGGGTTAGTCCAACTCCAG < 41bp 0.528192460543426 0.744949549463187 0.15055886 0.5243864 prediction 0.433514177839522 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32257415 chr22:32257418 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_121250 0 0 1 4 2 DEPDC5 chr22:32257354 3'AG 32257354 Downstream 65bp
chr22 32257418 32257418 1 + A G COAD 32257415 + 32257395 32257435 41 AGCATCGTCCGCCTTCTACCCTCAGGTTAGTCCAACTCCAG AGCATCGTCCGCCTTCTACCCTCGGGTTAGTCCAACTCCAG < 41bp 0.528192460543426 0.744949549463187 0.15055886 0.5243864 prediction 0.433514177839522 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32257415 chr22:32257418 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_121250 0 0 1 4 2 DEPDC5 chr22:32257419 5'GT 32257419 Upstream 2bp
chr13 24890232 24890232 1 + C T SKCM 24890231 + 24890211 24890251 41 AGGCAAGGGCACCCTGGAATCCCTGGGAACCCCGGTCACAA AGGCAAGGGCACCCTGGAATCTCTGGGAACCCCGGTCACAA < 41bp 0.455488791429863 0.716755769365129 0.09764102 0.19216669 prediction 0.433511538730257 Functional Gain - C1QTNF9 ENSG00000240654 CDS Human protein_coding chr13:24890231 chr13:24890232 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_121251 0 0 0 0 1 C1QTNF9 chr13:24890307 5'GT 24890307 Upstream 76bp
chr21 47422305 47422305 1 + C T SKCM 47422304 + 47422284 47422324 41 CGCTCAACGTGCTCTGCAGCCCCGGCATCCAGGTGGGGTGG CGCTCAACGTGCTCTGCAGCCTCGGCATCCAGGTGGGGTGG < 41bp 0.578034441940629 0.79478881987486 0.106603414 0.028403282 prediction 0.433508755868463 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47422304 chr21:47422305 nonsynonymous SNV 0.009 0 22 hm5C_associated_SNPs_121253 0 0 0 0 1 COL6A1 chr21:47422315 5'GT 47422315 Upstream 11bp
chr6 44144037 44144037 1 + C A ACC 44144036 + 44144016 44144056 41 ACTGATTCGGGTCCGGAATCCCTGGGGCCGGATTGAGTGGA ACTGATTCGGGTCCGGAATCCATGGGGCCGGATTGAGTGGA < 41bp 0.443080547356791 0.716749510164337 0.56512713 0.6766134 prediction 0.433499020328675 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44144036 chr6:44144037 synonymous SNV . 0 22 hm5C_associated_SNPs_121254 0 0 0 0 2 CAPN11 chr6:44143990 3'AG 44143990 Downstream 48bp
chr6 44144037 44144037 1 + C A ACC 44144036 + 44144016 44144056 41 ACTGATTCGGGTCCGGAATCCCTGGGGCCGGATTGAGTGGA ACTGATTCGGGTCCGGAATCCATGGGGCCGGATTGAGTGGA < 41bp 0.443080547356791 0.716749510164337 0.56512713 0.6766134 prediction 0.433499020328675 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44144036 chr6:44144037 synonymous SNV . 0 22 hm5C_associated_SNPs_121254 0 0 0 0 2 CAPN11 chr6:44144075 5'GT 44144075 Upstream 39bp
chr11 64030275 64030275 1 + C T SKCM 64030274 + 64030254 64030294 41 GACGAAGAGCCCTTCGACTTCCCCAAGGTGAGCCTGGCCCC GACGAAGAGCCCTTCGACTTCTCCAAGGTGAGCCTGGCCCC < 41bp 0.632287311970167 0.84903141523427 0.18598256 0.9415822 prediction 0.433488206528206 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64030274 chr11:64030275 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_121256 0 0 1 0 1 PLCB3 chr11:64030280 5'GT 64030280 Upstream 6bp
chr1 45478860 45478860 1 + T G SKCM 45478858 + 45478838 45478878 41 TTTTCAGCACGTGTCGCTCTCCTGAGGCCTGCTGTGAACTG TTTTCAGCACGTGTCGCTCTCCGGAGGCCTGCTGTGAACTG < 41bp 0.689563854195353 0.906304434560448 0.6442385 0.9350897 prediction 0.433481160730189 Functional Gain - UROD ENSG00000126088 CDS Human protein_coding chr1:45478858 chr1:45478860 synonymous SNV . 0 23 hm5C_associated_SNPs_121257 0 0 1 0 1 UROD chr1:45478887 5'GT 45478887 Upstream 28bp
chr19 808628 808628 1 + C T SKCM 808627 + 808607 808647 41 GCACCAGAACGTGCAGCTGCCCCGCGAGGGCCAGGAGGACC GCACCAGAACGTGCAGCTGCCTCGCGAGGGCCAGGAGGACC < 41bp 0.44981549917649 0.716719335671294 0.05182013 0.048980474 prediction 0.433438671342589 Functional Gain - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:808627 chr19:808628 synonymous SNV . 0 22 hm5C_associated_SNPs_121262 0 0 1 0 1 PTBP1 chr19:808546 3'AG 808546 Downstream 83bp
chr12 72278653 72278653 1 + A G UCEC 72278650 + 72278630 72278670 41 TCCTGTTCAGTTTGACAGACCTGAAATCAATCAAGCAAAAC TCCTGTTCAGTTTGACAGACCTGGAATCAATCAAGCAAAAC < 41bp 0.493488353958608 0.716709073505969 0.046556383 0.019234538 prediction 0.433418147011937 Functional Gain - TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72278650 chr12:72278653 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_121264 0 0 1 0 1 TBC1D15 chr12:72278591 3'AG 72278591 Downstream 63bp
chr6 43096813 43096813 1 + C T SKCM 43096812 + 43096792 43096832 41 TGTGAGGTTGAGGCTCCGGGCCCGGTACATGTGTACTGGCT TGTGAGGTTGAGGCTCCGGGCTCGGTACATGTGTACTGGCT < 41bp 0.58053643761712 0.797242923483778 0.28360754 0.27636695 prediction 0.433412971733316 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43096812 chr6:43096813 nonsynonymous SNV 0.053 0 22 hm5C_associated_SNPs_121265 0 0 1 0 1 PTK7 chr6:43096715 3'AG 43096715 Downstream 99bp
chr21 43708082 43708082 1 + C T SKCM 43708081 + 43708061 43708101 41 GAGGGCATGTGTGACTCAGACCACAAGAGAGACCTCGGGGG GAGGGCATGTGTGACTCAGACTACAAGAGAGACCTCGGGGG < 41bp 0.625516633615864 0.842222338788008 0.20643425 0.7313714 prediction 0.433411410344288 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43708081 chr21:43708082 nonsynonymous SNV 0.009 0 22 hm5C_associated_SNPs_121266 0 0 0 0 2 ABCG1 chr21:43707999 3'AG 43707999 Downstream 84bp
chr21 43708082 43708082 1 + C T SKCM 43708081 + 43708061 43708101 41 GAGGGCATGTGTGACTCAGACCACAAGAGAGACCTCGGGGG GAGGGCATGTGTGACTCAGACTACAAGAGAGACCTCGGGGG < 41bp 0.625516633615864 0.842222338788008 0.20643425 0.7313714 prediction 0.433411410344288 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43708081 chr21:43708082 nonsynonymous SNV 0.009 0 22 hm5C_associated_SNPs_121266 0 0 0 0 2 ABCG1 chr21:43708147 5'GT 43708147 Upstream 66bp
chr20 56735739 56735739 1 + C T STAD 56735738 + 56735718 56735758 41 TCTTTCCATCCCCCCCAGTCCCACAGACCACCCAGGGCTTC TCTTTCCATCCCCCCCAGTCCTACAGACCACCCAGGGCTTC < 41bp 0.598040037081544 0.814745723778232 0.055303574 0.0693036 prediction 0.433411373393376 Functional Gain - C20orf85 ENSG00000124237 CDS Human protein_coding chr20:56735738 chr20:56735739 nonsynonymous SNV 0.039 4 22 hm5C_associated_SNPs_121267 0 0 0 0 1 C20orf85 chr20:56735717 3'AG 56735717 Downstream 23bp
chr6 25769310 25769310 1 + T A COAD 25769306 + 25769286 25769326 41 GAACTTGAGCATTGCCATCCCAGCTATGGTGAACAACACAG GAACTTGAGCATTGCCATCCCAGCAATGGTGAACAACACAG < 41bp 0.497457442594742 0.716677804484671 0.046293795 0.06156814 prediction 0.433355608969341 Functional Gain - SLC17A4 ENSG00000146039 CDS Human protein_coding chr6:25769306 chr6:25769310 synonymous SNV . 0 25 hm5C_associated_SNPs_121276 0 0 0 0 1 SLC17A4 chr6:25769213 3'AG 25769213 Downstream 98bp
chr11 93170761 93170761 1 + T A SKCM 93170757 + 93170737 93170777 41 CTTTGGCTGCACAGCATTTCCTTCTGGAAGAAGAGAAACGA CTTTGGCTGCACAGCATTTCCTTCAGGAAGAAGAGAAACGA < 41bp 0.378847489403828 0.71667454402843 0.10063818 0.049538493 prediction 0.43334908805686 Functional Gain - DEUP1 ENSG00000165325 CDS Human protein_coding chr11:93170757 chr11:93170761 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_121278 0 0 0 0 1 DEUP1 chr11:93170709 3'AG 93170709 Downstream 53bp
chr11 101857730 101857730 1 + A G LGG 101857727 + 101857707 101857747 41 GCACACTGTCAGCTGAAGAACAGAAGATCCTAGAGTCCCTT GCACACTGTCAGCTGAAGAACAGGAGATCCTAGAGTCCCTT < 41bp 0.515851821252438 0.732520480834834 0.8895949 0.92451847 prediction 0.433337319164793 Functional Gain - CEP126 ENSG00000110318 CDS Human protein_coding chr11:101857727 chr11:101857730 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_121281 0 0 0 0 1 CEP126 chr11:101857772 5'GT 101857772 Upstream 43bp
chr16 2136297 2136297 1 + C T PAAD 2136296 + 2136276 2136316 41 TCGAGCTGAAGGACTGCCAGCCGGACAAGGTGTACCTGGGA TCGAGCTGAAGGACTGCCAGCTGGACAAGGTGTACCTGGGA < 41bp 0.472168011668076 0.716658804947421 0.27318758 0.1905956 prediction 0.433317609894842 Functional Gain - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2136296 chr16:2136297 nonsynonymous SNV 0.972 5 22 hm5C_associated_SNPs_121284 0 0 1 0 1 TSC2 chr16:2136380 5'GT 2136380 Upstream 84bp
chr22 45996279 45996279 1 + C T SKCM 45996278 + 45996258 45996298 41 GTCGGGGGCGTGGTCTCCCACCGAAATGTTGTCAACGTCCA GTCGGGGGCGTGGTCTCCCACTGAAATGTTGTCAACGTCCA < 41bp 0.598616007723868 0.815272661203074 0.05387965 0.15610614 prediction 0.433313306958412 Functional Gain - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45996278 chr22:45996279 stopgain 0.977 1 22 hm5C_associated_SNPs_121285 0 0 1 0 1 FBLN1 chr22:45996187 3'AG 45996187 Downstream 93bp
chr10 126172720 126172720 1 + C T SKCM 126172719 + 126172699 126172739 41 CTGCCGCAGACTGAAGCGTTCCCGGCTGAAGGTGAGGTTCT CTGCCGCAGACTGAAGCGTTCTCGGCTGAAGGTGAGGTTCT < 41bp 0.463493913237246 0.716651741135065 0.16132915 0.19784883 prediction 0.43330348227013 Functional Gain - LHPP ENSG00000107902 CDS Human protein_coding chr10:126172719 chr10:126172720 synonymous SNV . 0 22 hm5C_associated_SNPs_121290 0 0 0 0 1 LHPP chr10:126172708 3'AG 126172708 Downstream 13bp
chr9 2056843 2056843 1 + C T SKCM 2056842 + 2056822 2056862 41 AGGAAACGCCGTCAGAAACACCAGGTTCTTAGACCCTGGGC AGGAAACGCCGTCAGAAACACTAGGTTCTTAGACCCTGGGC < 41bp 0.471770929356215 0.716644835802393 0.7703717 0.30598357 prediction 0.433289671604785 Functional Gain - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2056842 chr9:2056843 stopgain 0.988 1 22 hm5C_associated_SNPs_121293 0 0 1 0 1 SMARCA2 chr9:2056845 5'GT 2056845 Upstream 3bp
chr11 114569423 114569423 1 + T C COAD 114569420 + 114569400 114569440 41 GTGAGGCCTCAACATATGCCCTGTGAGGCCTTGACCCACAT GTGAGGCCTCAACATATGCCCTGCGAGGCCTTGACCCACAT < 41bp 0.512053740997389 0.728697508594402 0.0775204 0.051003873 prediction 0.433287535194025 Functional Gain - NXPE2 ENSG00000204361 CDS Human protein_coding chr11:114569420 chr11:114569423 synonymous SNV . 0 24 hm5C_associated_SNPs_121294 0 0 0 0 1 NXPE2 chr11:114569500 5'GT 114569500 Upstream 78bp
chrX 35985835 35985835 1 + T C COAD 35985833 + 35985813 35985853 41 GTAGCAATGCTTCAATCAGCCATGACACGCACTCACAATCA GTAGCAATGCTTCAATCAGCCACGACACGCACTCACAATCA < 41bp 0.635795958840809 0.852439477216795 0.02510941 0.030060887 prediction 0.433287036751972 Functional Gain - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35985833 chrX:35985835 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_121295 0 0 0 0 1 CFAP47 chrX:35985736 3'AG 35985736 Downstream 100bp
chr1 82450323 82450323 1 + A G UCEC 82450320 + 82450300 82450340 41 TCATACTGCTGTGGAGGCCTCCCAACTGAGAGTCCCCACAG TCATACTGCTGTGGAGGCCTCCCGACTGAGAGTCCCCACAG < 41bp 0.505527688956489 0.722155733783988 0.35019362 0.09437841 prediction 0.433256089654998 Functional Gain - ADGRL2 ENSG00000117114 CDS Human protein_coding chr1:82450320 chr1:82450323 synonymous SNV . 0 24 hm5C_associated_SNPs_121298 0 0 1 0 2 ADGRL2 chr1:82450267 3'AG 82450267 Downstream 57bp
chr1 82450323 82450323 1 + A G UCEC 82450320 + 82450300 82450340 41 TCATACTGCTGTGGAGGCCTCCCAACTGAGAGTCCCCACAG TCATACTGCTGTGGAGGCCTCCCGACTGAGAGTCCCCACAG < 41bp 0.505527688956489 0.722155733783988 0.35019362 0.09437841 prediction 0.433256089654998 Functional Gain - ADGRL2 ENSG00000117114 CDS Human protein_coding chr1:82450320 chr1:82450323 synonymous SNV . 0 24 hm5C_associated_SNPs_121298 0 0 1 0 2 ADGRL2 chr1:82450395 5'GT 82450395 Upstream 73bp
chr19 39915896 39915896 1 + A G rs199999525 39915893 + 39915873 39915913 41 CACAGGAATCTATGGGCCTTCACAGGGCCCAGGGGGCTCCT CACAGGAATCTATGGGCCTTCACGGGGCCCAGGGGGCTCCT < 41bp 0.579713542077038 0.796333095320689 0.1549272 0.8003503 prediction 0.433239106487304 Functional Gain - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39915893 chr19:39915896 nonsynonymous SNV 0.920 0 24 hm5C_associated_SNPs_121300 0 0 1 0 1 PLEKHG2 chr19:39915878 3'AG 39915878 Downstream 19bp
chr16 85111052 85111052 1 + C T COAD 85111051 + 85111031 85111071 41 GAAAACCACAGCTGCTGCCCCCGGAGTCCCGGGAGAAGCCC GAAAACCACAGCTGCTGCCCCTGGAGTCCCGGGAGAAGCCC < 41bp 0.600445869065097 0.817063714890849 0.7451956 0.3745737 prediction 0.433235691651504 Functional Gain - KIAA0513 ENSG00000135709 CDS Human protein_coding chr16:85111051 chr16:85111052 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_121301 0 0 1 0 1 KIAA0513 chr16:85111031 3'AG 85111031 Downstream 22bp
chr15 85341836 85341836 1 + C T SKCM 85341835 + 85341815 85341855 41 CCAGAGCACCCACGGTGTTCCCCGAAATGTGGACGAGCTGT CCAGAGCACCCACGGTGTTCCTCGAAATGTGGACGAGCTGT < 41bp 0.452887205780709 0.716613409059865 0.30653837 0.9425419 prediction 0.433226818119731 Functional Gain - ZNF592 ENSG00000166716 CDS Human protein_coding chr15:85341835 chr15:85341836 synonymous SNV . 0 22 hm5C_associated_SNPs_121302 0 0 1 0 1 ZNF592 chr15:85341819 3'AG 85341819 Downstream 18bp
chr1 226016459 226016459 1 + T G COAD 226016456 + 226016436 226016476 41 GCTAGAAATCCTCCTCACTTCAGTGCTGGGCTTTGCCATCT GCTAGAAATCCTCCTCACTTCAGGGCTGGGCTTTGCCATCT < 41bp 0.718096802525305 0.934700993655573 0.39325714 0.8967672 prediction 0.433208382260536 Functional Gain - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226016456 chr1:226016459 nonsynonymous SNV 0.784 0 24 hm5C_associated_SNPs_121303 0 0 1 0 1 EPHX1 chr1:226016426 3'AG 226016426 Downstream 34bp
chr19 45682563 45682563 1 + C T SKCM 45682562 + 45682542 45682582 41 CTAGTTCGGTGCCATGGCGTCCCAGGGTCGTCGGCGGAGGC CTAGTTCGGTGCCATGGCGTCTCAGGGTCGTCGGCGGAGGC < 41bp 0.553181929609576 0.769782556370063 0.33977687 0.22756654 prediction 0.433201253520974 Functional Gain - BLOC1S3 ENSG00000189114 CDS Human protein_coding chr19:45682562 chr19:45682563 synonymous SNV . 0 22 hm5C_associated_SNPs_121304 0 0 1 0 1 BLOC1S3 chr19:45682546 3'AG 45682546 Downstream 18bp
chr9 139232385 139232385 1 + T C UCEC 139232383 + 139232363 139232403 41 CTGGGGAACGCCCACGTCTTCCTGGGGCGCTTTGACGTGGC CTGGGGAACGCCCACGTCTTCCCGGGGCGCTTTGACGTGGC < 41bp 0.445620660447199 0.71659754476147 0.49137387 0.63233817 prediction 0.433195089522939 Functional Gain - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139232383 chr9:139232385 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_121307 0 0 0 0 2 GPSM1 chr9:139232303 3'AG 139232303 Downstream 83bp
chr9 139232385 139232385 1 + T C UCEC 139232383 + 139232363 139232403 41 CTGGGGAACGCCCACGTCTTCCTGGGGCGCTTTGACGTGGC CTGGGGAACGCCCACGTCTTCCCGGGGCGCTTTGACGTGGC < 41bp 0.445620660447199 0.71659754476147 0.49137387 0.63233817 prediction 0.433195089522939 Functional Gain - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139232383 chr9:139232385 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_121307 0 0 0 0 2 GPSM1 chr9:139232418 5'GT 139232418 Upstream 34bp
chr19 15807031 15807031 1 + C T SKCM 15807030 + 15807010 15807050 41 ACCCAACTGTGTGGCCGGATCCTGAGGTGCTGCCTTCCCCA ACCCAACTGTGTGGCCGGATCTTGAGGTGCTGCCTTCCCCA < 41bp 0.593500494635866 0.810097588668995 0.71673965 0.4979138 prediction 0.433194188066258 Functional Gain - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15807030 chr19:15807031 nonsynonymous SNV 0.967 2 22 hm5C_associated_SNPs_121308 0 0 1 0 2 CYP4F12 chr19:15806971 3'AG 15806971 Downstream 61bp
chr19 15807031 15807031 1 + C T SKCM 15807030 + 15807010 15807050 41 ACCCAACTGTGTGGCCGGATCCTGAGGTGCTGCCTTCCCCA ACCCAACTGTGTGGCCGGATCTTGAGGTGCTGCCTTCCCCA < 41bp 0.593500494635866 0.810097588668995 0.71673965 0.4979138 prediction 0.433194188066258 Functional Gain - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15807030 chr19:15807031 nonsynonymous SNV 0.967 2 22 hm5C_associated_SNPs_121308 0 0 1 0 2 CYP4F12 chr19:15807035 5'GT 15807035 Upstream 5bp
chr12 51237706 51237706 1 + C T UCEC 51237705 + 51237685 51237725 41 AAGCACAAGCTGGCGCATGGCCGTGGGTGGTGAGCCTGCAG AAGCACAAGCTGGCGCATGGCTGTGGGTGGTGAGCCTGCAG < 41bp 0.561337272760224 0.777931464289026 0.29318517 0.38210756 prediction 0.433188383057605 Functional Gain - TMPRSS12 ENSG00000186452 CDS Human protein_coding chr12:51237705 chr12:51237706 nonsynonymous SNV 0.144 5 22 hm5C_associated_SNPs_121310 0 0 0 0 1 TMPRSS12 chr12:51237625 3'AG 51237625 Downstream 82bp
chr1 84956031 84956031 1 + C T STAD 84956030 + 84956010 84956050 41 ACGACTCTGTGAACAGCTCTCCACAGTTATACCAAACTCAC ACGACTCTGTGAACAGCTCTCTACAGTTATACCAAACTCAC < 41bp 0.615388503369016 0.83198172547932 0.028423965 0.0779472 prediction 0.43318644422061 Functional Gain - RPF1 ENSG00000117133 CDS Human protein_coding chr1:84956030 chr1:84956031 synonymous SNV . 0 22 hm5C_associated_SNPs_121311 0 0 1 0 1 RPF1 chr1:84956002 3'AG 84956002 Downstream 30bp
chr5 137767233 137767233 1 + T C PAAD 137767231 + 137767211 137767251 41 TCTCTAACACTCATACAAATCATGAGGATAAACTGCAGGTA TCTCTAACACTCATACAAATCACGAGGATAAACTGCAGGTA < 41bp 0.460821236209281 0.716590733502073 0.16385955 0.16514045 prediction 0.433181467004146 Functional Gain - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137767231 chr5:137767233 synonymous SNV . 0 23 hm5C_associated_SNPs_121312 0 0 1 0 1 KDM3B chr5:137767248 5'GT 137767248 Upstream 16bp
chrX 102470649 102470649 1 + T G rs773238013 102470647 + 102470627 102470667 41 CTAAGTGTCGCGGCGGCGCACCTCGCGTCAAGAATCCGGAG CTAAGTGTCGCGGCGGCGCACCGCGCGTCAAGAATCCGGAG < 41bp 0.421758287140911 0.716581526005643 0.12217453 0.3299458 prediction 0.433163052011286 Functional Gain - BEX4 ENSG00000102409 UTR5 Human protein_coding chrX:102470647 chrX:102470649 . . 0 23 hm5C_associated_SNPs_121318 0 0 1 0 2 BEX4 chrX:102470610 3'AG 102470610 Downstream 40bp
chrX 102470649 102470649 1 + T G rs773238013 102470647 + 102470627 102470667 41 CTAAGTGTCGCGGCGGCGCACCTCGCGTCAAGAATCCGGAG CTAAGTGTCGCGGCGGCGCACCGCGCGTCAAGAATCCGGAG < 41bp 0.421758287140911 0.716581526005643 0.12217453 0.3299458 prediction 0.433163052011286 Functional Gain - BEX4 ENSG00000102409 UTR5 Human protein_coding chrX:102470647 chrX:102470649 . . 0 23 hm5C_associated_SNPs_121318 0 0 1 0 2 BEX4 chrX:102470692 5'GT 102470692 Upstream 44bp
chr19 40095888 40095888 1 + C T GBM 40095887 + 40095867 40095907 41 TCAGATATTGCCTTCCGTTTCCGAGTGCACTTTGGCAATCA TCAGATATTGCCTTCCGTTTCTGAGTGCACTTTGGCAATCA < 41bp 0.558529737944952 0.775107488348659 0.29456997 0.11194816 prediction 0.433155500807414 Functional Gain - LGALS13 ENSG00000105198 CDS Human protein_coding chr19:40095887 chr19:40095888 stopgain 0.013 0 22 hm5C_associated_SNPs_121321 0 0 0 0 1 LGALS13 chr19:40095818 3'AG 40095818 Downstream 71bp
chr19 41630626 41630626 1 + C T SKCM 41630625 + 41630605 41630645 41 CTTCCCGCTTCCTCTCCAGCCCGCGTGCAGGAGGAGATCGA CTTCCCGCTTCCTCTCCAGCCTGCGTGCAGGAGGAGATCGA < 41bp 0.531585457105683 0.748151206043552 0.16396695 0.16597718 prediction 0.433131497875739 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41630625 chr19:41630626 nonsynonymous SNV 0.719 1 22 hm5C_associated_SNPs_121325 0 0 0 0 1 CYP2F1 chr19:41630624 3'AG 41630624 Downstream 3bp
chr19 34818947 34818947 1 + C T COAD 34818946 + 34818926 34818966 41 CGGGGCGGAGGCAGACACCCCCGCAGCCCATGCAGTGTGAG CGGGGCGGAGGCAGACACCCCTGCAGCCCATGCAGTGTGAG < 41bp 0.618767768376158 0.83533032638076 0.070990324 0.16616374 prediction 0.433125116009205 Functional Gain - KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34818946 chr19:34818947 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_121327 0 0 1 0 1 KIAA0355 chr19:34818895 3'AG 34818895 Downstream 53bp
chr13 24465574 24465574 1 - G T rs184736262 24465575 - 24465555 24465595 41 GCTTACGTGAGCTCTGAGGACCAGGCCTCTGGCAGCATTGT GCTTACGTGAGCTCTGAGGACAAGGCCTCTGGCAGCATTGT < 41bp 0.454670713609459 0.716561879811139 0.5277491 0.35650706 prediction 0.433123759622277 Functional Gain - C1QTNF9B;PCOTH ENSG00000205863 CDS Human protein_coding chr13:24465575 chr13:24465574 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_121328 0 0 0 0 1 C1QTNF9B chr13:24465650 3'AG 24465650 Downstream 77bp
chr10 30984920 30984920 1 + T C STAD 30984918 + 30984898 30984938 41 AGTAAAGAAAACTTCAGCAACGTCAGCCTGCGGAGCGTCAA AGTAAAGAAAACTTCAGCAACGCCAGCCTGCGGAGCGTCAA < 41bp 0.450576776901068 0.716561129267558 0.12484056 0.26924038 prediction 0.433122258535116 Functional Gain - SVILP1 ENSG00000234814 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:30984918 chr10:30984920 . . 0 23 hm5C_associated_SNPs_121329 0 0 0 0 2 SVILP1 chr10:30984851 3'AG 30984851 Downstream 70bp
chr10 30984920 30984920 1 + T C STAD 30984918 + 30984898 30984938 41 AGTAAAGAAAACTTCAGCAACGTCAGCCTGCGGAGCGTCAA AGTAAAGAAAACTTCAGCAACGCCAGCCTGCGGAGCGTCAA < 41bp 0.450576776901068 0.716561129267558 0.12484056 0.26924038 prediction 0.433122258535116 Functional Gain - SVILP1 ENSG00000234814 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:30984918 chr10:30984920 . . 0 23 hm5C_associated_SNPs_121329 0 0 0 0 2 SVILP1 chr10:30985006 5'GT 30985006 Upstream 87bp
chr2 182374408 182374408 1 + C T SKCM 182374407 + 182374387 182374427 41 AGATGTGCGGGACATCCTCACCCCAATTCAGATTGAAGCTG AGATGTGCGGGACATCCTCACTCCAATTCAGATTGAAGCTG < 41bp 0.444401051869348 0.71655899658499 0.08380109 0.9393275 prediction 0.433117993169979 Functional Gain - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182374407 chr2:182374408 synonymous SNV . 0 22 hm5C_associated_SNPs_121331 0 0 1 0 1 ITGA4 chr2:182374385 3'AG 182374385 Downstream 24bp
chr13 53624408 53624408 1 + C T rs35787155 53624407 + 53624387 53624427 41 GTACGTCAACATGTACAACACCGGGAATATTGCCAGAGTTA GTACGTCAACATGTACAACACTGGGAATATTGCCAGAGTTA < 41bp 0.528841952025905 0.745399697350763 0.24895585 0.15535077 prediction 0.433115490649718 Functional Gain - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53624407 chr13:53624408 synonymous SNV . 0 22 hm5C_associated_SNPs_121332 0 0 0 0 1 OLFM4 chr13:53624356 3'AG 53624356 Downstream 53bp
chr19 50150056 50150056 1 + C T SKCM 50150055 + 50150035 50150075 41 GCCTGTGCCCAGCCTGCTGCCCCGTCTCAGGGCCTGGAGGA GCCTGTGCCCAGCCTGCTGCCTCGTCTCAGGGCCTGGAGGA < 41bp 0.46657155765725 0.716553019338414 0.009031892 0.012738287 prediction 0.433106038676828 Functional Gain - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50150055 chr19:50150056 synonymous SNV . 0 22 hm5C_associated_SNPs_121333 0 0 1 0 2 SCAF1 chr19:50149972 3'AG 50149972 Downstream 85bp
chr19 50150056 50150056 1 + C T SKCM 50150055 + 50150035 50150075 41 GCCTGTGCCCAGCCTGCTGCCCCGTCTCAGGGCCTGGAGGA GCCTGTGCCCAGCCTGCTGCCTCGTCTCAGGGCCTGGAGGA < 41bp 0.46657155765725 0.716553019338414 0.009031892 0.012738287 prediction 0.433106038676828 Functional Gain - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50150055 chr19:50150056 synonymous SNV . 0 22 hm5C_associated_SNPs_121333 0 0 1 0 2 SCAF1 chr19:50150087 5'GT 50150087 Upstream 32bp
chr1 161677073 161677073 1 + C T rs138600205 161677072 + 161677052 161677092 41 ACCATGAAGCTGGGCTGTGTCCTCATGGCCTGGGCCCTCTA ACCATGAAGCTGGGCTGTGTCTTCATGGCCTGGGCCCTCTA < 41bp 0.560668188525979 0.777211707873489 0.04277435 0.52629495 prediction 0.43308703869502 Functional Gain - FCRLA ENSG00000132185 CDS Human protein_coding chr1:161677072 chr1:161677073 nonsynonymous SNV 0.014 2 22 hm5C_associated_SNPs_121334 0 0 0 0 1 FCRLA chr1:161677133 5'GT 161677133 Upstream 61bp
chr20 44575000 44575000 1 + A G UCEC 44574997 + 44574977 44575017 41 TACTGTTCTGCCTTCCCCGACACAGACGGCTACTTTGGCTC TACTGTTCTGCCTTCCCCGACACGGACGGCTACTTTGGCTC < 41bp 0.461703887840158 0.71653590510245 0.24519631 0.41052064 prediction 0.433071810204899 Functional Gain - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44574997 chr20:44575000 synonymous SNV . 0 24 hm5C_associated_SNPs_121339 0 0 1 0 1 PCIF1 chr20:44575023 5'GT 44575023 Upstream 24bp
chr3 38316517 38316517 1 + C A rs41285119 38316516 + 38316496 38316536 41 GCCCTCATGGAGGACGCAGGCCGTGGTCCTGGCCCAGTGCA GCCCTCATGGAGGACGCAGGCAGTGGTCCTGGCCCAGTGCA < 41bp 0.44591976872245 0.716534817601031 0.5097335 0.5598472 prediction 0.433069635202062 Functional Gain - SLC22A13 ENSG00000172940 CDS Human protein_coding chr3:38316516 chr3:38316517 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_121340 0 0 0 0 1 SLC22A13 chr3:38316480 3'AG 38316480 Downstream 38bp
chr22 50316018 50316018 1 + A G rs548409518 50316015 + 50315995 50316035 41 TGTTGGCGTGGCGTGGGCCACGCATGGATCCGTGGCCGGAA TGTTGGCGTGGCGTGGGCCACGCGTGGATCCGTGGCCGGAA < 41bp 0.471123910478625 0.716525158715366 0.30663764 0.45155066 prediction 0.433050317430731 Functional Gain - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50316015 chr22:50316018 synonymous SNV . 0 24 hm5C_associated_SNPs_121344 0 0 1 0 2 CRELD2 chr22:50315945 3'AG 50315945 Downstream 74bp
chr22 50316018 50316018 1 + A G rs548409518 50316015 + 50315995 50316035 41 TGTTGGCGTGGCGTGGGCCACGCATGGATCCGTGGCCGGAA TGTTGGCGTGGCGTGGGCCACGCGTGGATCCGTGGCCGGAA < 41bp 0.471123910478625 0.716525158715366 0.30663764 0.45155066 prediction 0.433050317430731 Functional Gain - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50316015 chr22:50316018 synonymous SNV . 0 24 hm5C_associated_SNPs_121344 0 0 1 0 2 CRELD2 chr22:50316091 5'GT 50316091 Upstream 74bp
chr19 36033462 36033462 1 + T C UCEC 36033460 + 36033440 36033480 41 CCGGATGCACCAATGTTCGTCATGGGTGTCAATGAAAATGA CCGGATGCACCAATGTTCGTCACGGGTGTCAATGAAAATGA < 41bp 0.440049498597488 0.716522236827676 0.3892881 0.55534333 prediction 0.433044473655351 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36033460 chr19:36033462 nonsynonymous SNV 0.961 4 23 hm5C_associated_SNPs_121346 0 0 0 0 2 GAPDHS chr19:36033392 3'AG 36033392 Downstream 71bp
chr19 36033462 36033462 1 + T C UCEC 36033460 + 36033440 36033480 41 CCGGATGCACCAATGTTCGTCATGGGTGTCAATGAAAATGA CCGGATGCACCAATGTTCGTCACGGGTGTCAATGAAAATGA < 41bp 0.440049498597488 0.716522236827676 0.3892881 0.55534333 prediction 0.433044473655351 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36033460 chr19:36033462 nonsynonymous SNV 0.961 4 23 hm5C_associated_SNPs_121346 0 0 0 0 2 GAPDHS chr19:36033510 5'GT 36033510 Upstream 49bp
chr15 42682218 42682218 1 + T A LUAD 42682214 + 42682194 42682234 41 ACATGGGGGAGTTGATTGCACGGATGGTAAGGAATATGGAT ACATGGGGGAGTTGATTGCACGGAAGGTAAGGAATATGGAT < 41bp 0.418714972917799 0.716521508880367 0.33813208 0.25559235 prediction 0.433043017760735 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42682214 chr15:42682218 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_121347 0 0 0 0 2 CAPN3 chr15:42682151 3'AG 42682151 Downstream 68bp
chr15 42682218 42682218 1 + T A LUAD 42682214 + 42682194 42682234 41 ACATGGGGGAGTTGATTGCACGGATGGTAAGGAATATGGAT ACATGGGGGAGTTGATTGCACGGAAGGTAAGGAATATGGAT < 41bp 0.418714972917799 0.716521508880367 0.33813208 0.25559235 prediction 0.433043017760735 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42682214 chr15:42682218 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_121347 0 0 0 0 2 CAPN3 chr15:42682294 5'GT 42682294 Upstream 77bp
chr16 2820366 2820366 1 + C T UCEC 2820365 + 2820345 2820385 41 TTCCCCAGGTCCCGCAGCCCCCGGAAGCCAATAGACTCCCT TTCCCCAGGTCCCGCAGCCCCTGGAAGCCAATAGACTCCCT < 41bp 0.598914920391482 0.81543611171861 0.785643 0.8791611 prediction 0.433042382654257 Functional Gain - SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2820365 chr16:2820366 nonsynonymous SNV 0.896 3 22 hm5C_associated_SNPs_121348 0 0 1 0 1 SRRM2 chr16:2820353 3'AG 2820353 Downstream 14bp
chr9 92220790 92220790 1 + A G UCEC 92220787 + 92220767 92220807 41 CGGGCGACCTGCACTGCATCCTCATTTCGGTGAGTACAGTC CGGGCGACCTGCACTGCATCCTCGTTTCGGTGAGTACAGTC < 41bp 0.570891652168837 0.787410840811653 0.07607609 0.08514112 prediction 0.433038377285633 Functional Gain - GADD45G ENSG00000130222 CDS Human protein_coding chr9:92220787 chr9:92220790 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_121349 0 0 0 0 1 GADD45G chr9:92220795 5'GT 92220795 Upstream 6bp
chr6 43412975 43412975 1 + C T OV 43412974 + 43412954 43412994 41 AATTCCCTCTGCACCCTTCTCCGGGCAGTGCTCTTTGCAGC AATTCCCTCTGCACCCTTCTCTGGGCAGTGCTCTTTGCAGC < 41bp 0.603502189264565 0.820019957962588 0.9235873 0.8924942 prediction 0.433035537396045 Functional Gain - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43412974 chr6:43412975 nonsynonymous SNV 0.994 5 22 hm5C_associated_SNPs_121350 0 0 0 0 1 ABCC10 chr6:43413052 5'GT 43413052 Upstream 78bp
chr14 21567333 21567333 1 + C A rs12889457 21567329 + 21567309 21567349 41 AAGAAGTGGTACCTTCCTTCCAGGCGATTGTAGTCTAGACT AAGAAGTGGTACCTTCCTTCCAGGAGATTGTAGTCTAGACT < 41bp 0.388209673534427 0.716512780369018 0.7779007 0.87571687 prediction 0.433025560738036 Functional Gain - TMEM253 ENSG00000232070 UTR5 Human protein_coding chr14:21567329 chr14:21567333 . . 0 25 hm5C_associated_SNPs_121351 0 0 0 0 1 TMEM253 chr14:21567357 5'GT 21567357 Upstream 25bp
chr17 4789867 4789867 1 + C T HNSC 4789866 + 4789846 4789886 41 CAGCCCACGGAGCGGCAGGTCCGCATCCAGCTTAAGGACCA CAGCCCACGGAGCGGCAGGTCTGCATCCAGCTTAAGGACCA < 41bp 0.482647996754324 0.716509344935448 0.07407242 0.13549149 prediction 0.433018689870897 Functional Gain - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4789866 chr17:4789867 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_121352 0 0 1 0 2 MINK1 chr17:4789912 5'GT 4789912 Upstream 46bp
chr17 4789867 4789867 1 + C T HNSC 4789866 + 4789846 4789886 41 CAGCCCACGGAGCGGCAGGTCCGCATCCAGCTTAAGGACCA CAGCCCACGGAGCGGCAGGTCTGCATCCAGCTTAAGGACCA < 41bp 0.482647996754324 0.716509344935448 0.07407242 0.13549149 prediction 0.433018689870897 Functional Gain - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4789866 chr17:4789867 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_121352 0 0 1 0 2 MINK1 chr17:4789921 5'GT 4789921 Upstream 55bp
chr9 80880402 80880402 1 + T C UCEC 80880400 + 80880380 80880420 41 CTAAAGAAGAAAAGAAGGCGCTTGAAGATGAAAAACCAGAA CTAAAGAAGAAAAGAAGGCGCTCGAAGATGAAAAACCAGAA < 41bp 0.442168757285007 0.716505171254145 0.065265626 0.09166157 prediction 0.433010342508289 Functional Gain - CEP78 ENSG00000148019 CDS Human protein_coding chr9:80880400 chr9:80880402 synonymous SNV . 0 23 hm5C_associated_SNPs_121353 0 0 1 0 1 CEP78 chr9:80880459 5'GT 80880459 Upstream 58bp
chr17 48050624 48050624 1 + C A rs139118373 48050623 + 48050603 48050643 41 GGCAGCGCAGCTCGGCCTCACCCAGACCCAGGTGGGGCCAG GGCAGCGCAGCTCGGCCTCACACAGACCCAGGTGGGGCCAG < 41bp 0.447951602454542 0.716503444829448 0.3949532 0.26596054 prediction 0.433006889658896 Functional Gain - DLX4 ENSG00000108813 CDS Human protein_coding chr17:48050623 chr17:48050624 synonymous SNV . 0 22 hm5C_associated_SNPs_121355 0 0 0 0 1 DLX4 chr17:48050633 5'GT 48050633 Upstream 10bp
chr17 4619471 4619471 1 + C A LGG 4619470 + 4619450 4619490 41 GTGCTTGTGGACCCTGACTACCTGAAGGACCGCAAAGGTAC GTGCTTGTGGACCCTGACTACATGAAGGACCGCAAAGGTAC < 41bp 0.453024296805615 0.716496169573086 0.26426652 0.5696163 prediction 0.432992339146171 Functional Gain - ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4619470 chr17:4619471 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_121359 0 0 1 0 2 ARRB2 chr17:4619442 3'AG 4619442 Downstream 30bp
chr17 4619471 4619471 1 + C A LGG 4619470 + 4619450 4619490 41 GTGCTTGTGGACCCTGACTACCTGAAGGACCGCAAAGGTAC GTGCTTGTGGACCCTGACTACATGAAGGACCGCAAAGGTAC < 41bp 0.453024296805615 0.716496169573086 0.26426652 0.5696163 prediction 0.432992339146171 Functional Gain - ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4619470 chr17:4619471 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_121359 0 0 1 0 2 ARRB2 chr17:4619486 5'GT 4619486 Upstream 16bp
chr14 24635409 24635409 1 + C T rs150652707 24635408 + 24635388 24635428 41 ATTCTGTCCCTGGTGTAGAGCCTGGGGGACCCATCTTCCAC ATTCTGTCCCTGGTGTAGAGCTTGGGGGACCCATCTTCCAC < 41bp 0.548312353003361 0.764801264831004 0.45041886 0.14122635 prediction 0.432977823655287 Functional Gain - IRF9 ENSG00000213928 CDS Human protein_coding chr14:24635408 chr14:24635409 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_121361 0 0 1 0 1 IRF9 chr14:24635331 3'AG 24635331 Downstream 79bp
chr12 10339129 10339129 1 + C A LUAD 10339128 + 10339108 10339148 41 GGGAAGATGGGGGCCCACCACCCTGTGAAGTGACCGTCATT GGGAAGATGGGGGCCCACCACACTGTGAAGTGACCGTCATT < 41bp 0.445754876472325 0.716487315712377 0.097810775 0.3278265 prediction 0.432974631424755 Functional Gain - TMEM52B ENSG00000165685 CDS Human protein_coding chr12:10339128 chr12:10339129 nonsynonymous SNV 0.080 4 22 hm5C_associated_SNPs_121362 0 0 0 0 1 TMEM52B chr12:10339188 5'GT 10339188 Upstream 60bp
chr11 31561263 31561263 1 + A G KIRP 31561260 + 31561240 31561280 41 GCTCTTCAAGTATTTCCTGGCAGAAGGAATTGTCAATGGGC GCTCTTCAAGTATTTCCTGGCAGGAGGAATTGTCAATGGGC < 41bp 0.54390012815988 0.760386911813639 0.17742047 0.3161952 prediction 0.432973567307519 Functional Gain - ELP4 ENSG00000109911 CDS Human protein_coding chr11:31561260 chr11:31561263 nonsynonymous SNV 0.960 4 24 hm5C_associated_SNPs_121363 0 0 1 0 2 ELP4 chr11:31561209 3'AG 31561209 Downstream 55bp
chr11 31561263 31561263 1 + A G KIRP 31561260 + 31561240 31561280 41 GCTCTTCAAGTATTTCCTGGCAGAAGGAATTGTCAATGGGC GCTCTTCAAGTATTTCCTGGCAGGAGGAATTGTCAATGGGC < 41bp 0.54390012815988 0.760386911813639 0.17742047 0.3161952 prediction 0.432973567307519 Functional Gain - ELP4 ENSG00000109911 CDS Human protein_coding chr11:31561260 chr11:31561263 nonsynonymous SNV 0.960 4 24 hm5C_associated_SNPs_121363 0 0 1 0 2 ELP4 chr11:31561330 5'GT 31561330 Upstream 68bp
chrX 54566597 54566597 1 + C A LIHC 54566593 + 54566573 54566613 41 AAAGCAAAATGGGAAGAAAGCAACCTCCAAAGTGCCCTCTG AAAGCAAAATGGGAAGAAAGCAACATCCAAAGTGCCCTCTG < 41bp 0.306213401128817 0.71648169045631 0.07210067 0.15759176 prediction 0.43296338091262 Functional Gain - GNL3L ENSG00000130119 CDS Human protein_coding chrX:54566593 chrX:54566597 synonymous SNV . 0 25 hm5C_associated_SNPs_121366 0 0 1 0 2 GNL3L chrX:54566568 3'AG 54566568 Downstream 30bp
chrX 54566597 54566597 1 + C A LIHC 54566593 + 54566573 54566613 41 AAAGCAAAATGGGAAGAAAGCAACCTCCAAAGTGCCCTCTG AAAGCAAAATGGGAAGAAAGCAACATCCAAAGTGCCCTCTG < 41bp 0.306213401128817 0.71648169045631 0.07210067 0.15759176 prediction 0.43296338091262 Functional Gain - GNL3L ENSG00000130119 CDS Human protein_coding chrX:54566593 chrX:54566597 synonymous SNV . 0 25 hm5C_associated_SNPs_121366 0 0 1 0 2 GNL3L chrX:54566675 5'GT 54566675 Upstream 79bp
chr11 1861849 1861849 1 + C T COAD 1861848 + 1861828 1861868 41 ACTACCTGGCGGAGCACTGCCCGCCGCTGCATATCCCGGGC ACTACCTGGCGGAGCACTGCCTGCCGCTGCATATCCCGGGC < 41bp 0.472490974662173 0.716474664729266 0.119843036 0.23232836 prediction 0.432949329458533 Functional Gain - TNNI2 ENSG00000130598 CDS Human protein_coding chr11:1861848 chr11:1861849 nonsynonymous SNV 0.509 5 22 hm5C_associated_SNPs_121371 2 0 0 0 1 TNNI2 chr11:1861886 5'GT 1861886 Upstream 38bp
chr5 1246012 1246012 1 + C G LUAD 1246008 + 1245988 1246028 41 AGCTCTACCCGGGCTGGGCGCGCGCCGCCTGTGTGCTGCTG AGCTCTACCCGGGCTGGGCGCGCGGCGCCTGTGTGCTGCTG < 41bp 0.643886963921282 0.860360124090603 0.22639075 0.8881564 prediction 0.432946320338641 Functional Gain - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1246008 chr5:1246012 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_121372 0 0 0 0 1 SLC6A18 chr5:1245963 3'AG 1245963 Downstream 50bp
chr10 5979117 5979117 1 + T C rs2274033 5979114 + 5979094 5979134 41 GGGGGCTACCTCTGCCACTCCTGTGCGGAGCAGCGCATCGG GGGGGCTACCTCTGCCACTCCTGCGCGGAGCAGCGCATCGG < 41bp 0.518876992815563 0.735350058852116 0.36864528 0.2329211 prediction 0.432946132073105 Functional Gain - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5979114 chr10:5979117 synonymous SNV . 0 24 hm5C_associated_SNPs_121373 0 0 1 0 1 FBXO18 chr10:5979073 3'AG 5979073 Downstream 45bp
chr2 70031721 70031721 1 + C G LUAD 70031720 + 70031700 70031740 41 TACCGCAACACCGCCCAGCGCCAGGAGATCAGGACAGCCTA TACCGCAACACCGCCCAGCGCGAGGAGATCAGGACAGCCTA < 41bp 0.605008303564581 0.821480763406869 0.82838345 0.810603 prediction 0.432944919684575 Functional Gain - ANXA4 ENSG00000196975 CDS Human protein_coding chr2:70031720 chr2:70031721 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_121374 0 0 1 0 1 ANXA4 chr2:70031665 3'AG 70031665 Downstream 57bp
chr2 25043676 25043676 1 - G A COAD 25043677 - 25043657 25043697 41 CTGGCTGGGGTCATCGGAGCCCGGAAACCACACTACGACAT CTGGCTGGGGTCATCGGAGCCTGGAAACCACACTACGACAT < 41bp 0.614040638119939 0.830506480232547 0.82581365 0.60933995 prediction 0.432931684225216 Functional Gain - ADCY3 ENSG00000138031 CDS Human protein_coding chr2:25043677 chr2:25043676 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_121377 0 0 1 0 2 ADCY3 chr2:25043593 5'GT 25043593 Upstream 84bp
chr2 25043676 25043676 1 - G A COAD 25043677 - 25043657 25043697 41 CTGGCTGGGGTCATCGGAGCCCGGAAACCACACTACGACAT CTGGCTGGGGTCATCGGAGCCTGGAAACCACACTACGACAT < 41bp 0.614040638119939 0.830506480232547 0.82581365 0.60933995 prediction 0.432931684225216 Functional Gain - ADCY3 ENSG00000138031 CDS Human protein_coding chr2:25043677 chr2:25043676 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_121377 0 0 1 0 2 ADCY3 chr2:25043717 3'AG 25043717 Downstream 42bp
chr12 121134143 121134143 1 + C T COAD 121134142 + 121134122 121134162 41 TACCAAAGCTTCAGCCTCATCCGGGATTGGAGAAGAAAGAA TACCAAAGCTTCAGCCTCATCTGGGATTGGAGAAGAAAGAA < 41bp 0.478225967499954 0.716464269604695 0.7697934 0.34601986 prediction 0.43292853920939 Functional Gain - MLEC ENSG00000110917 CDS Human protein_coding chr12:121134142 chr12:121134143 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_121379 0 0 1 0 1 MLEC chr12:121134119 3'AG 121134119 Downstream 25bp
chr9 35679953 35679953 1 + T A LAML 35679949 + 35679929 35679969 41 AATGGGCGAGTGATTGAGGCCTCCTTCCCTGCTGGAGTGGA AATGGGCGAGTGATTGAGGCCTCCATCCCTGCTGGAGTGGA < 41bp 0.353956898864636 0.716452464335843 0.026642531 0.9440752 prediction 0.432904928671686 Functional Gain - CA9 ENSG00000107159 CDS Human protein_coding chr9:35679949 chr9:35679953 nonsynonymous SNV 0.943 3 25 hm5C_associated_SNPs_121382 0 0 0 0 1 CA9 chr9:35679995 5'GT 35679995 Upstream 43bp
chr6 108497939 108497939 1 + C A ESCA 108497938 + 108497918 108497958 41 GAGCCTGGCTCAGCCCACGCCCAAGGTCAGCGGCCTTGCTG GAGCCTGGCTCAGCCCACGCCAAAGGTCAGCGGCCTTGCTG < 41bp 0.441537024293676 0.71644297710736 0.031722337 0.42307162 prediction 0.432885954214721 Functional Gain - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108497938 chr6:108497939 synonymous SNV . 0 22 hm5C_associated_SNPs_121387 0 0 0 0 1 NR2E1 chr6:108497942 5'GT 108497942 Upstream 4bp
chr20 1187603 1187603 1 + T A rs376822625 1187599 + 1187579 1187619 41 GAGCTGCGTGCGGACAGCGCCCACTGGGAGGACGCCAGGTC GAGCTGCGTGCGGACAGCGCCCACAGGGAGGACGCCAGGTC < 41bp 0.392789551273313 0.71643802729695 0.049250245 0.08085188 prediction 0.4328760545939 Functional Gain - C20orf202 ENSG00000215595 CDS Human protein_coding chr20:1187599 chr20:1187603 nonsynonymous SNV 0.823 1 25 hm5C_associated_SNPs_121388 0 0 0 0 1 C20orf202 chr20:1187513 3'AG 1187513 Downstream 91bp
chr22 46727612 46727612 1 + T C rs73177073 46727610 + 46727590 46727630 41 AAGCCAGAGAAGCCCCGCTCCATGAGCAGTGACTCCCCAGG AAGCCAGAGAAGCCCCGCTCCACGAGCAGTGACTCCCCAGG < 41bp 0.563532368175637 0.779969280413348 0.16559839 0.3002416 prediction 0.432873824475422 Functional Gain - GTSE1 ENSG00000075218 downstream Human protein_coding chr22:46727610 chr22:46727612 . . 0 23 hm5C_associated_SNPs_121390 0 0 0 0 1 GTSE1 chr22:46727629 5'GT 46727629 Upstream 18bp
chr10 121212278 121212278 1 + C G LUAD 121212277 + 121212257 121212297 41 CACAGACGACGACTTCTACTCCAAGTTCTCCACGGGCTCTG CACAGACGACGACTTCTACTCGAAGTTCTCCACGGGCTCTG < 41bp 0.388147809112821 0.716426111801428 0.3013968 0.79490805 prediction 0.432852223602857 Functional Gain - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121212277 chr10:121212278 synonymous SNV . 0 22 hm5C_associated_SNPs_121392 0 0 1 0 2 GRK5 chr10:121212183 3'AG 121212183 Downstream 96bp
chr10 121212278 121212278 1 + C G LUAD 121212277 + 121212257 121212297 41 CACAGACGACGACTTCTACTCCAAGTTCTCCACGGGCTCTG CACAGACGACGACTTCTACTCGAAGTTCTCCACGGGCTCTG < 41bp 0.388147809112821 0.716426111801428 0.3013968 0.79490805 prediction 0.432852223602857 Functional Gain - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121212277 chr10:121212278 synonymous SNV . 0 22 hm5C_associated_SNPs_121392 0 0 1 0 2 GRK5 chr10:121212320 5'GT 121212320 Upstream 43bp
chr1 9009479 9009479 1 + C T SKCM 9009478 + 9009458 9009498 41 GACCCAGGCAGGGGAGTTCCCCATGGTCAACAATGGCCACA GACCCAGGCAGGGGAGTTCCCTATGGTCAACAATGGCCACA < 41bp 0.485244197094678 0.716424231276883 0.6972216 0.16699263 prediction 0.432848462553765 Functional Gain - CA6 ENSG00000131686 CDS Human protein_coding chr1:9009478 chr1:9009479 synonymous SNV . 0 22 hm5C_associated_SNPs_121393 0 0 0 0 1 CA6 chr1:9009501 5'GT 9009501 Upstream 23bp
chr1 16975438 16975438 1 + C G rs201921002 16975434 + 16975414 16975454 41 CGGCTGGATCAGCGTTGTTCCAAGCTGCGCGTGGCTGGGGG CGGCTGGATCAGCGTTGTTCCAAGGTGCGCGTGGCTGGGGG < 41bp 0.407322737200947 0.716421790453487 0.871305 0.9080318 prediction 0.432843580906975 Functional Gain - MST1P2 ENSG00000186301 ncRNA_exonic Human unprocessed_pseudogene chr1:16975434 chr1:16975438 . . 0 25 hm5C_associated_SNPs_121394 0 0 1 0 3 MST1P2 chr1:16975376 3'AG 16975376 Downstream 63bp
chr1 16975438 16975438 1 + C G rs201921002 16975434 + 16975414 16975454 41 CGGCTGGATCAGCGTTGTTCCAAGCTGCGCGTGGCTGGGGG CGGCTGGATCAGCGTTGTTCCAAGGTGCGCGTGGCTGGGGG < 41bp 0.407322737200947 0.716421790453487 0.871305 0.9080318 prediction 0.432843580906975 Functional Gain - MST1P2 ENSG00000186301 ncRNA_exonic Human unprocessed_pseudogene chr1:16975434 chr1:16975438 . . 0 25 hm5C_associated_SNPs_121394 0 0 1 0 3 MST1P2 chr1:16975496 5'GT 16975496 Upstream 59bp
chr1 16975438 16975438 1 + C G rs201921002 16975434 + 16975414 16975454 41 CGGCTGGATCAGCGTTGTTCCAAGCTGCGCGTGGCTGGGGG CGGCTGGATCAGCGTTGTTCCAAGGTGCGCGTGGCTGGGGG < 41bp 0.407322737200947 0.716421790453487 0.871305 0.9080318 prediction 0.432843580906975 Functional Gain - MST1P2 ENSG00000186301 ncRNA_exonic Human unprocessed_pseudogene chr1:16975434 chr1:16975438 . . 0 25 hm5C_associated_SNPs_121394 0 0 1 0 3 MST1P2 chr1:16975536 5'GT 16975536 Upstream 99bp
chr7 128370026 128370026 1 + C G rs115549300 128370022 + 128370002 128370042 41 ACGTTGGAGGGCTTCATTCACGTACGGAGAGTGGGAAAGAG ACGTTGGAGGGCTTCATTCACGTAGGGAGAGTGGGAAAGAG < 41bp 0.414157910834349 0.716420062581273 0.3552626 0.7908048 prediction 0.432840125162547 Functional Gain - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128370022 chr7:128370026 stopgain 0.005 0 25 hm5C_associated_SNPs_121397 0 0 0 0 2 FAM71F1 chr7:128369956 3'AG 128369956 Downstream 71bp
chr7 128370026 128370026 1 + C G rs115549300 128370022 + 128370002 128370042 41 ACGTTGGAGGGCTTCATTCACGTACGGAGAGTGGGAAAGAG ACGTTGGAGGGCTTCATTCACGTAGGGAGAGTGGGAAAGAG < 41bp 0.414157910834349 0.716420062581273 0.3552626 0.7908048 prediction 0.432840125162547 Functional Gain - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128370022 chr7:128370026 stopgain 0.005 0 25 hm5C_associated_SNPs_121397 0 0 0 0 2 FAM71F1 chr7:128370123 5'GT 128370123 Upstream 98bp
chr6 43416877 43416877 1 + C T SKCM 43416876 + 43416856 43416896 41 GGTGAGCTGGGTGAGGGGGGCCGGAGCTTATCTCTTGGGCA GGTGAGCTGGGTGAGGGGGGCTGGAGCTTATCTCTTGGGCA < 41bp 0.589105306331145 0.805524804188171 0.8482749 0.86461484 prediction 0.432838995714053 Functional Gain - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43416876 chr6:43416877 nonsynonymous SNV 0.784 3 22 hm5C_associated_SNPs_121398 0 0 1 0 2 ABCC10 chr6:43416845 3'AG 43416845 Downstream 33bp
chr6 43416877 43416877 1 + C T SKCM 43416876 + 43416856 43416896 41 GGTGAGCTGGGTGAGGGGGGCCGGAGCTTATCTCTTGGGCA GGTGAGCTGGGTGAGGGGGGCTGGAGCTTATCTCTTGGGCA < 41bp 0.589105306331145 0.805524804188171 0.8482749 0.86461484 prediction 0.432838995714053 Functional Gain - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43416876 chr6:43416877 nonsynonymous SNV 0.784 3 22 hm5C_associated_SNPs_121398 0 0 1 0 2 ABCC10 chr6:43416942 5'GT 43416942 Upstream 66bp
chrX 131206347 131206347 1 + C T SKCM 131206346 + 131206326 131206366 41 TCCTGAATGGAGCTTTACCACCGTACGAAAGAAGCCTGATC TCCTGAATGGAGCTTTACCACTGTACGAAAGAAGCCTGATC < 41bp 0.457372924036053 0.716418433250006 0.29029515 0.18901506 prediction 0.432836866500012 Functional Gain - STK26 ENSG00000134602 CDS Human protein_coding chrX:131206346 chrX:131206347 synonymous SNV . 0 22 hm5C_associated_SNPs_121399 0 0 1 0 2 STK26 chrX:131206296 3'AG 131206296 Downstream 52bp
chrX 131206347 131206347 1 + C T SKCM 131206346 + 131206326 131206366 41 TCCTGAATGGAGCTTTACCACCGTACGAAAGAAGCCTGATC TCCTGAATGGAGCTTTACCACTGTACGAAAGAAGCCTGATC < 41bp 0.457372924036053 0.716418433250006 0.29029515 0.18901506 prediction 0.432836866500012 Functional Gain - STK26 ENSG00000134602 CDS Human protein_coding chrX:131206346 chrX:131206347 synonymous SNV . 0 22 hm5C_associated_SNPs_121399 0 0 1 0 2 STK26 chrX:131206389 5'GT 131206389 Upstream 43bp
chr9 91606398 91606398 1 + C G rs201976671 91606397 + 91606377 91606417 41 TCGGGCAGAGGCCGAGGAAGCCGGTTCCGGGGACGGGCAAC TCGGGCAGAGGCCGAGGAAGCGGGTTCCGGGGACGGGCAAC < 41bp 0.666440820834658 0.882855341875715 0.8276895 0.900275 prediction 0.432829042082114 Functional Gain - C9orf47 ENSG00000186354 CDS Human protein_coding chr9:91606397 chr9:91606398 nonsynonymous SNV 0.003 2 22 hm5C_associated_SNPs_121400 0 0 0 0 1 C9orf47 chr9:91606385 3'AG 91606385 Downstream 14bp
chr8 145731401 145731401 1 + C T SKCM 145731400 + 145731380 145731420 41 GTACCAGGACAACGTGTACGCCGCGGGTTCGCAGTTCCACT GTACCAGGACAACGTGTACGCTGCGGGTTCGCAGTTCCACT < 41bp 0.547718585985827 0.764131677841858 0.4823049 0.25463632 prediction 0.432826183712061 Functional Gain - GPT ENSG00000167701 CDS Human protein_coding chr8:145731400 chr8:145731401 synonymous SNV . 0 22 hm5C_associated_SNPs_121401 0 0 0 0 1 GPT chr8:145731378 3'AG 145731378 Downstream 24bp
chrX 40996215 40996215 1 + A G STAD 40996212 + 40996192 40996232 41 CGTCCATGTGAATCAGTTTCCTCAAGTGTTCAGTTGCCTGA CGTCCATGTGAATCAGTTTCCTCGAGTGTTCAGTTGCCTGA < 41bp 0.499337321330132 0.716409887511207 0.056681514 0.13023049 prediction 0.432819775022413 Functional Gain - USP9X ENSG00000124486 CDS Human protein_coding chrX:40996212 chrX:40996215 synonymous SNV . 0 24 hm5C_associated_SNPs_121405 0 0 1 0 1 USP9X chrX:40996275 5'GT 40996275 Upstream 61bp
chr3 87302930 87302930 1 + T A LUSC 87302926 + 87302906 87302946 41 TACTTCAAAGGCTACAATCTCAGATGAAGAGATTGAACGGC TACTTCAAAGGCTACAATCTCAGAAGAAGAGATTGAACGGC < 41bp 0.648898187216177 0.865307431378864 0.88025784 0.87448454 prediction 0.432818488325372 Functional Gain - CHMP2B ENSG00000083937 CDS Human protein_coding chr3:87302926 chr3:87302930 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_121406 0 0 1 0 1 CHMP2B chr3:87302862 3'AG 87302862 Downstream 69bp
chr2 96259802 96259802 1 + A G LUSC 96259799 + 96259779 96259819 41 CAGACTTCTCACATGCCTTCCAGAAGGAACTCACCTGCGTC CAGACTTCTCACATGCCTTCCAGGAGGAACTCACCTGCGTC < 41bp 0.566914154908601 0.783320883961207 0.18149912 0.740828 prediction 0.432813458105214 Functional Gain - TRIM43 ENSG00000144015 CDS Human protein_coding chr2:96259799 chr2:96259802 nonsynonymous SNV 0.046 0 24 hm5C_associated_SNPs_121408 0 0 0 0 1 TRIM43 chr2:96259768 3'AG 96259768 Downstream 35bp
chr1 17727737 17727737 1 + C A UCEC 17727736 + 17727716 17727756 41 ATGGGCAAGAACCTGGGGATCCCCAAGCCTTTTGGGCCCCA ATGGGCAAGAACCTGGGGATCACCAAGCCTTTTGGGCCCCA < 41bp 0.562486920467255 0.77889171942219 0.61798155 0.65396786 prediction 0.432809597909872 Functional Gain - PADI6 ENSG00000256049 ncRNA_exonic Human other chr1:17727736 chr1:17727737 . 1.000 2 22 hm5C_associated_SNPs_121409 0 0 0 0 1 PADI6 chr1:17727701 3'AG 17727701 Downstream 37bp
chr5 145428761 145428761 1 + C T UCEC 145428760 + 145428740 145428780 41 CAGGGGCGTCTCCTTGGTCACCGGGCGAGTCGGCATCTTCC CAGGGGCGTCTCCTTGGTCACTGGGCGAGTCGGCATCTTCC < 41bp 0.473500594547054 0.716398260495485 0.9035983 0.89224505 prediction 0.432796520990971 Functional Gain - SH3RF2 ENSG00000156463 CDS Human protein_coding chr5:145428760 chr5:145428761 synonymous SNV . 0 22 hm5C_associated_SNPs_121411 0 0 1 0 1 SH3RF2 chr5:145428808 5'GT 145428808 Upstream 48bp
chr10 71020980 71020980 1 + C T UCEC 71020979 + 71020959 71020999 41 ACCAAGCAGGGTCTCCTCTTCCGAGGGCAGATTTCAGAGCG ACCAAGCAGGGTCTCCTCTTCTGAGGGCAGATTTCAGAGCG < 41bp 0.604273985659647 0.820667211192185 0.936011 0.8767477 prediction 0.432786451065075 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71020979 chr10:71020980 stopgain 0.995 1 22 hm5C_associated_SNPs_121412 0 0 0 0 2 HKDC1 chr10:71020895 3'AG 71020895 Downstream 86bp
chr10 71020980 71020980 1 + C T UCEC 71020979 + 71020959 71020999 41 ACCAAGCAGGGTCTCCTCTTCCGAGGGCAGATTTCAGAGCG ACCAAGCAGGGTCTCCTCTTCTGAGGGCAGATTTCAGAGCG < 41bp 0.604273985659647 0.820667211192185 0.936011 0.8767477 prediction 0.432786451065075 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71020979 chr10:71020980 stopgain 0.995 1 22 hm5C_associated_SNPs_121412 0 0 0 0 2 HKDC1 chr10:71021050 5'GT 71021050 Upstream 71bp
chr3 119445030 119445030 1 + C T LUAD 119445029 + 119445009 119445049 41 ATCCTGCAGGTCGGGGTCTCCCAGCAGGACAAGCTGAGGTG ATCCTGCAGGTCGGGGTCTCCTAGCAGGACAAGCTGAGGTG < 41bp 0.46876874448366 0.71638817722832 0.28422883 0.21180171 prediction 0.432776354456641 Functional Gain - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119445029 chr3:119445030 nonsynonymous SNV 0.946 4 22 hm5C_associated_SNPs_121416 0 0 0 0 1 MAATS1 chr3:119445018 3'AG 119445018 Downstream 13bp
chr14 103593025 103593025 1 + C A rs200076847 103593024 + 103593004 103593044 41 GGGGCTGGATGGCCCGCCCCCCACAGGTGCTCTAGGACCCT GGGGCTGGATGGCCCGCCCCCAACAGGTGCTCTAGGACCCT < 41bp 0.468764017364134 0.716384277813957 0.17494255 0.33136836 prediction 0.432768555627914 Functional Gain - TNFAIP2 ENSG00000185215 CDS Human protein_coding chr14:103593024 chr14:103593025 synonymous SNV . 0 22 hm5C_associated_SNPs_121421 0 0 1 0 1 TNFAIP2 chr14:103593029 5'GT 103593029 Upstream 5bp
chr10 112335111 112335111 1 + A G UCEC 112335108 + 112335088 112335128 41 TTCCAGCAATTCAGTTTGTTCTCAGTGATGAGTTTAGTCAT TTCCAGCAATTCAGTTTGTTCTCGGTGATGAGTTTAGTCAT < 41bp 0.485829980293442 0.716378356328616 0.08723158 0.1611214 prediction 0.432756712657232 Functional Gain - SMC3 ENSG00000108055 CDS Human protein_coding chr10:112335108 chr10:112335111 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_121423 0 0 1 0 2 SMC3 chr10:112335094 3'AG 112335094 Downstream 18bp
chr10 112335111 112335111 1 + A G UCEC 112335108 + 112335088 112335128 41 TTCCAGCAATTCAGTTTGTTCTCAGTGATGAGTTTAGTCAT TTCCAGCAATTCAGTTTGTTCTCGGTGATGAGTTTAGTCAT < 41bp 0.485829980293442 0.716378356328616 0.08723158 0.1611214 prediction 0.432756712657232 Functional Gain - SMC3 ENSG00000108055 CDS Human protein_coding chr10:112335108 chr10:112335111 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_121423 0 0 1 0 2 SMC3 chr10:112335161 5'GT 112335161 Upstream 51bp
chr3 45677682 45677682 1 + C G rs548705746 45677678 + 45677658 45677698 41 CAGCAAAGGGGTGTTTGGGGCTGGCCAGGCCTGTCAGGCCA CAGCAAAGGGGTGTTTGGGGCTGGGCAGGCCTGTCAGGCCA < 41bp 0.429641368111611 0.716374928463432 0.22893932 0.33754593 prediction 0.432749856926863 Functional Gain - LIMD1 ENSG00000144791 CDS Human protein_coding chr3:45677678 chr3:45677682 synonymous SNV . 0 25 hm5C_associated_SNPs_121426 0 0 1 0 2 LIMD1 chr3:45677642 3'AG 45677642 Downstream 41bp
chr3 45677682 45677682 1 + C G rs548705746 45677678 + 45677658 45677698 41 CAGCAAAGGGGTGTTTGGGGCTGGCCAGGCCTGTCAGGCCA CAGCAAAGGGGTGTTTGGGGCTGGGCAGGCCTGTCAGGCCA < 41bp 0.429641368111611 0.716374928463432 0.22893932 0.33754593 prediction 0.432749856926863 Functional Gain - LIMD1 ENSG00000144791 CDS Human protein_coding chr3:45677678 chr3:45677682 synonymous SNV . 0 25 hm5C_associated_SNPs_121426 0 0 1 0 2 LIMD1 chr3:45677743 5'GT 45677743 Upstream 62bp
chr6 161139414 161139414 1 + C T STAD 161139413 + 161139393 161139433 41 GAATGTGGCTGTTACCGTGTCCGGGCACACCTGTCAGCACT GAATGTGGCTGTTACCGTGTCTGGGCACACCTGTCAGCACT < 41bp 0.584876551375126 0.801244232220754 0.4431611 0.2987445 prediction 0.432735361691256 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161139413 chr6:161139414 synonymous SNV . 0 22 hm5C_associated_SNPs_121430 0 0 1 0 2 PLG chr6:161139326 3'AG 161139326 Downstream 89bp
chr6 161139414 161139414 1 + C T STAD 161139413 + 161139393 161139433 41 GAATGTGGCTGTTACCGTGTCCGGGCACACCTGTCAGCACT GAATGTGGCTGTTACCGTGTCTGGGCACACCTGTCAGCACT < 41bp 0.584876551375126 0.801244232220754 0.4431611 0.2987445 prediction 0.432735361691256 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161139413 chr6:161139414 synonymous SNV . 0 22 hm5C_associated_SNPs_121430 0 0 1 0 2 PLG chr6:161139488 5'GT 161139488 Upstream 75bp
chr1 161199640 161199640 1 - G C LUAD 161199644 - 161199624 161199664 41 GAGGCCTACGGGTACCAAATCCAGCACATCCAGGGCCTGTC GAGGCCTACGGGTACCAAATCCAGGACATCCAGGGCCTGTC < 41bp 0.454213155100007 0.716367576609214 0.72131026 0.90553486 prediction 0.432735153218428 Functional Gain - NR1I3 ENSG00000143257 CDS Human protein_coding chr1:161199644 chr1:161199640 nonsynonymous SNV 0.832 1 25 hm5C_associated_SNPs_121431 0 0 0 0 1 NR1I3 chr1:161199716 3'AG 161199716 Downstream 77bp
chr17 80680718 80680718 1 + C T HNSC 80680717 + 80680697 80680737 41 GAGGAACGGCCCTTTGTGGCCCGGTTTGGATTTGACGTGGT GAGGAACGGCCCTTTGTGGCCTGGTTTGGATTTGACGTGGT < 41bp 0.586484582339863 0.802835572938254 0.22239053 0.1886889 prediction 0.432701981196782 Functional Gain - FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80680717 chr17:80680718 nonsynonymous SNV 0.373 3 22 hm5C_associated_SNPs_121436 0 0 1 0 2 FN3KRP chr17:80680680 3'AG 80680680 Downstream 39bp
chr17 80680718 80680718 1 + C T HNSC 80680717 + 80680697 80680737 41 GAGGAACGGCCCTTTGTGGCCCGGTTTGGATTTGACGTGGT GAGGAACGGCCCTTTGTGGCCTGGTTTGGATTTGACGTGGT < 41bp 0.586484582339863 0.802835572938254 0.22239053 0.1886889 prediction 0.432701981196782 Functional Gain - FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80680717 chr17:80680718 nonsynonymous SNV 0.373 3 22 hm5C_associated_SNPs_121436 0 0 1 0 2 FN3KRP chr17:80680762 5'GT 80680762 Upstream 45bp
chr16 56904079 56904079 1 + T G COAD 56904075 + 56904055 56904095 41 GGCTCCATCGGCCTCATTTTCGCTTTCGCCAATGCCGTGGG GGCTCCATCGGCCTCATTTTCGCTGTCGCCAATGCCGTGGG < 41bp 0.509539279307704 0.725889437316674 0.2320264 0.24699366 prediction 0.43270031601794 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56904075 chr16:56904079 nonsynonymous SNV 0.310 4 25 hm5C_associated_SNPs_121438 0 0 1 0 2 SLC12A3 chr16:56904008 3'AG 56904008 Downstream 72bp
chr16 56904079 56904079 1 + T G COAD 56904075 + 56904055 56904095 41 GGCTCCATCGGCCTCATTTTCGCTTTCGCCAATGCCGTGGG GGCTCCATCGGCCTCATTTTCGCTGTCGCCAATGCCGTGGG < 41bp 0.509539279307704 0.725889437316674 0.2320264 0.24699366 prediction 0.43270031601794 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56904075 chr16:56904079 nonsynonymous SNV 0.310 4 25 hm5C_associated_SNPs_121438 0 0 1 0 2 SLC12A3 chr16:56904147 5'GT 56904147 Upstream 69bp
chr19 3938712 3938712 1 + A G STAD 3938709 + 3938689 3938729 41 CAGCGTCCAGCCAGAGGCCTCGGACACCCACATCCTCCTCC CAGCGTCCAGCCAGAGGCCTCGGGCACCCACATCCTCCTCC < 41bp 0.457445162474383 0.716340720167626 0.41588634 0.90363854 prediction 0.432681440335252 Functional Gain - NMRK2 ENSG00000077009 CDS Human protein_coding chr19:3938709 chr19:3938712 nonsynonymous SNV 0.890 0 24 hm5C_associated_SNPs_121441 0 0 0 0 1 NMRK2 chr19:3938757 5'GT 3938757 Upstream 46bp
chr9 71152407 71152407 1 - G A LUSC 71152408 - 71152388 71152428 41 ATGCTGTTTTGTCCCCTAGGCCAGACTTTTACCCTCCAGCT ATGCTGTTTTGTCCCCTAGGCTAGACTTTTACCCTCCAGCT < 41bp 0.536152818739287 0.75249085529629 0.11657706 0.10641417 prediction 0.432676073114007 Functional Gain - TMEM252 ENSG00000181778 CDS Human protein_coding chr9:71152408 chr9:71152407 nonsynonymous SNV 0.988 4 22 hm5C_associated_SNPs_121442 0 0 0 0 1 TMEM252 chr9:71152409 3'AG 71152409 Downstream 3bp
chr16 2111888 2111888 1 + A G UCEC 2111885 + 2111865 2111905 41 ACTGCAGACCTTGGACAGCCCGGAGCTCAGGACCATCGTCC ACTGCAGACCTTGGACAGCCCGGGGCTCAGGACCATCGTCC < 41bp 0.566917624954767 0.783250379268668 0.81380856 0.88946176 prediction 0.432665508627802 Functional Gain - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2111885 chr16:2111888 nonsynonymous SNV 0.418 4 24 hm5C_associated_SNPs_121443 0 0 1 0 1 TSC2 chr16:2111872 3'AG 2111872 Downstream 17bp
chr19 39959750 39959750 1 + A G PRAD 39959747 + 39959727 39959767 41 GGGTGTGAAGCCAACACTCTCTGAGCTGGAAAAGTTTGAGG GGGTGTGAAGCCAACACTCTCTGGGCTGGAAAAGTTTGAGG < 41bp 0.577890245232407 0.794222413707377 0.07316816 0.21048519 prediction 0.43266433694994 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39959747 chr19:39959750 nonsynonymous SNV 0.829 4 24 hm5C_associated_SNPs_121444 0 0 1 0 2 SUPT5H chr19:39959719 3'AG 39959719 Downstream 32bp
chr19 39959750 39959750 1 + A G PRAD 39959747 + 39959727 39959767 41 GGGTGTGAAGCCAACACTCTCTGAGCTGGAAAAGTTTGAGG GGGTGTGAAGCCAACACTCTCTGGGCTGGAAAAGTTTGAGG < 41bp 0.577890245232407 0.794222413707377 0.07316816 0.21048519 prediction 0.43266433694994 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39959747 chr19:39959750 nonsynonymous SNV 0.829 4 24 hm5C_associated_SNPs_121444 0 0 1 0 2 SUPT5H chr19:39959812 5'GT 39959812 Upstream 63bp
chr6 168443341 168443341 1 + T C rs58648170 168443339 + 168443319 168443359 41 TGGGGGCTTTGTTGGAGCACCGTGGCCATGCCCCGTACCGG TGGGGGCTTTGTTGGAGCACCGCGGCCATGCCCCGTACCGG < 41bp 0.607934272285167 0.824262599482793 0.6780549 0.747334 prediction 0.432656654395251 Functional Gain - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168443339 chr6:168443341 synonymous SNV . 0 23 hm5C_associated_SNPs_121445 0 0 0 0 1 KIF25 chr6:168443396 5'GT 168443396 Upstream 56bp
chr5 896848 896848 1 + T G SKCM 896845 + 896825 896865 41 CTGAATGAAGATGGCCCCAGCAGTGAAAATCTGGAGGAAGA CTGAATGAAGATGGCCCCAGCAGGGAAAATCTGGAGGAAGA < 41bp 0.312385692712258 0.716319775755654 0.74587333 0.881781 prediction 0.432639551511309 Functional Gain - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:896845 chr5:896848 nonsynonymous SNV 0.881 1 24 hm5C_associated_SNPs_121448 0 0 1 0 2 TRIP13 chr5:896780 3'AG 896780 Downstream 69bp
chr5 896848 896848 1 + T G SKCM 896845 + 896825 896865 41 CTGAATGAAGATGGCCCCAGCAGTGAAAATCTGGAGGAAGA CTGAATGAAGATGGCCCCAGCAGGGAAAATCTGGAGGAAGA < 41bp 0.312385692712258 0.716319775755654 0.74587333 0.881781 prediction 0.432639551511309 Functional Gain - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:896845 chr5:896848 nonsynonymous SNV 0.881 1 24 hm5C_associated_SNPs_121448 0 0 1 0 2 TRIP13 chr5:896909 5'GT 896909 Upstream 62bp
chr9 139840215 139840215 1 + C T UCEC 139840214 + 139840194 139840234 41 GCCATGGCTGTCAGTACCTTCCGAAAGCTGTGAGTCCCAGA GCCATGGCTGTCAGTACCTTCTGAAAGCTGTGAGTCCCAGA < 41bp 0.472410090054688 0.716314548614249 0.33291104 0.22235739 prediction 0.432629097228498 Functional Gain - C8G ENSG00000176919 CDS Human protein_coding chr9:139840214 chr9:139840215 stopgain 0.505 0 22 hm5C_associated_SNPs_121451 0 0 1 0 1 C8G chr9:139840222 5'GT 139840222 Upstream 8bp
chr5 132425373 132425373 1 + C T STAD 132425372 + 132425352 132425392 41 CTCCTCAGGATTTGCCCTATCCAGATCCTGCTATAGGTAAG CTCCTCAGGATTTGCCCTATCTAGATCCTGCTATAGGTAAG < 41bp 0.601947066199825 0.818260944098474 0.33691353 0.08528006 prediction 0.432627755797298 Functional Gain - HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132425372 chr5:132425373 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_121452 0 0 1 0 1 HSPA4 chr5:132425387 5'GT 132425387 Upstream 15bp
chr5 139622979 139622979 1 + T C MESO 139622976 + 139622956 139622996 41 CGGCTCTCTGTTGCTGCTGTCTCTGGGACATGCTCACCTGA CGGCTCTCTGTTGCTGCTGTCTCCGGGACATGCTCACCTGA < 41bp 0.496722530176857 0.716301678591609 0.17079005 0.23852798 prediction 0.432603357183218 Functional Gain - CYSTM1 ENSG00000120306 CDS Human protein_coding chr5:139622976 chr5:139622979 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_121455 0 0 1 0 1 CYSTM1 chr5:139623048 5'GT 139623048 Upstream 70bp
chr19 11472161 11472161 1 + A G UCEC 11472158 + 11472138 11472178 41 TGCGCCTACGCGGTCACCTACACAGCGGTGAGCTTCGGGAG TGCGCCTACGCGGTCACCTACACGGCGGTGAGCTTCGGGAG < 41bp 0.597676899200658 0.81397267300664 0.42798322 0.8530767 prediction 0.432591547611965 Functional Gain - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11472158 chr19:11472161 synonymous SNV . 0 24 hm5C_associated_SNPs_121456 0 0 1 0 1 PLPPR2 chr19:11472164 5'GT 11472164 Upstream 4bp
chr20 2636061 2636061 1 + A G BRCA 2636058 + 2636038 2636078 41 CTTGCCCAGTTTATTGGAAACCGAAGGGAACTGAATGAGGA CTTGCCCAGTTTATTGGAAACCGGAGGGAACTGAATGAGGA < 41bp 0.541154149024748 0.757447737556948 0.25480166 0.8610172 prediction 0.4325871770644 Functional Gain - NOP56 ENSG00000101361 CDS Human protein_coding chr20:2636058 chr20:2636061 synonymous SNV . 0 24 hm5C_associated_SNPs_121459 0 0 1 0 2 NOP56 chr20:2635971 3'AG 2635971 Downstream 91bp
chr20 2636061 2636061 1 + A G BRCA 2636058 + 2636038 2636078 41 CTTGCCCAGTTTATTGGAAACCGAAGGGAACTGAATGAGGA CTTGCCCAGTTTATTGGAAACCGGAGGGAACTGAATGAGGA < 41bp 0.541154149024748 0.757447737556948 0.25480166 0.8610172 prediction 0.4325871770644 Functional Gain - NOP56 ENSG00000101361 CDS Human protein_coding chr20:2636058 chr20:2636061 synonymous SNV . 0 24 hm5C_associated_SNPs_121459 0 0 1 0 2 NOP56 chr20:2636158 5'GT 2636158 Upstream 98bp
chr11 36250770 36250770 1 + A G STAD 36250767 + 36250747 36250787 41 TCTGACACGGAATCTCTGAACCAAGCCGACCTGCCCCCCTA TCTGACACGGAATCTCTGAACCAGGCCGACCTGCCCCCCTA < 41bp 0.474665667513665 0.716291609460719 0.32527846 0.91433793 prediction 0.432583218921438 Functional Gain - LDLRAD3 ENSG00000179241 CDS Human protein_coding chr11:36250767 chr11:36250770 synonymous SNV . 0 24 hm5C_associated_SNPs_121460 0 0 1 0 1 LDLRAD3 chr11:36250710 3'AG 36250710 Downstream 61bp
chr7 133933822 133933822 1 + A G STAD 133933819 + 133933799 133933839 41 ACCTCCATTTGGACCATATCCTGAAAAGAGGTGAGTTGAGG ACCTCCATTTGGACCATATCCTGGAAAGAGGTGAGTTGAGG < 41bp 0.530401959629509 0.746686093342702 0.27672082 0.7803383 prediction 0.432568267426386 Functional Gain - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133933819 chr7:133933822 nonsynonymous SNV 0.983 0 24 hm5C_associated_SNPs_121465 0 0 0 0 1 LRGUK chr7:133933828 5'GT 133933828 Upstream 7bp
chr17 40458352 40458352 1 + C T SKCM 40458351 + 40458331 40458371 41 AAGGCCGAAGTGCAGAGCAACCGGGGCCTGACCAAGGAGAA AAGGCCGAAGTGCAGAGCAACTGGGGCCTGACCAAGGAGAA < 41bp 0.466168564168089 0.71628174901495 0.8892987 0.873564 prediction 0.4325634980299 Functional Gain - STAT5A ENSG00000126561 CDS Human protein_coding chr17:40458351 chr17:40458352 nonsynonymous SNV 0.994 5 22 hm5C_associated_SNPs_121467 0 0 0 0 1 STAT5A chr17:40458259 3'AG 40458259 Downstream 94bp
chr11 64129153 64129153 1 + C A HNSC 64129149 + 64129129 64129169 41 AGCCTGGGCATCTTGCTCTTCGAGCTGCTGACGGGGGCCTC AGCCTGGGCATCTTGCTCTTCGAGATGCTGACGGGGGCCTC < 41bp 0.719707746068253 0.93598829998085 0.34861708 0.71277124 prediction 0.432561107825195 Functional Gain - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64129149 chr11:64129153 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_121468 0 0 1 0 2 RPS6KA4 chr11:64129114 3'AG 64129114 Downstream 40bp
chr11 64129153 64129153 1 + C A HNSC 64129149 + 64129129 64129169 41 AGCCTGGGCATCTTGCTCTTCGAGCTGCTGACGGGGGCCTC AGCCTGGGCATCTTGCTCTTCGAGATGCTGACGGGGGCCTC < 41bp 0.719707746068253 0.93598829998085 0.34861708 0.71277124 prediction 0.432561107825195 Functional Gain - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64129149 chr11:64129153 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_121468 0 0 1 0 2 RPS6KA4 chr11:64129217 5'GT 64129217 Upstream 65bp
chr1 12919636 12919636 1 + C T SARC 12919635 + 12919615 12919655 41 GCCTGGGCCCTGTCCTGCTTCCCAGAGGCCATGAGTAAGAG GCCTGGGCCCTGTCCTGCTTCTCAGAGGCCATGAGTAAGAG < 41bp 0.461713372916516 0.716280095552486 0.034564376 0.030152649 prediction 0.432560191104972 Functional Gain - PRAMEF2 ENSG00000120952 CDS Human protein_coding chr1:12919635 chr1:12919636 nonsynonymous SNV 0.010 0 22 hm5C_associated_SNPs_121469 0 0 0 0 1 PRAMEF2 chr1:12919548 3'AG 12919548 Downstream 89bp
chr12 42839842 42839842 1 + C T rs186308218 42839841 + 42839821 42839861 41 GGCTAGGACCCAACCAAGTACCAGAAATGAAGGAAACGACC GGCTAGGACCCAACCAAGTACTAGAAATGAAGGAAACGACC < 41bp 0.514349983743193 0.730625331374294 0.17937672 0.8969629 prediction 0.432550695262202 Functional Gain - PPHLN1 ENSG00000134283 CDS Human protein_coding chr12:42839841 chr12:42839842 nonsynonymous SNV 0.058 1 22 hm5C_associated_SNPs_121471 0 0 1 1 2 PPHLN1 chr12:42839775 3'AG 42839775 Downstream 68bp
chr12 42839842 42839842 1 + C T rs186308218 42839841 + 42839821 42839861 41 GGCTAGGACCCAACCAAGTACCAGAAATGAAGGAAACGACC GGCTAGGACCCAACCAAGTACTAGAAATGAAGGAAACGACC < 41bp 0.514349983743193 0.730625331374294 0.17937672 0.8969629 prediction 0.432550695262202 Functional Gain - PPHLN1 ENSG00000134283 CDS Human protein_coding chr12:42839841 chr12:42839842 nonsynonymous SNV 0.058 1 22 hm5C_associated_SNPs_121471 0 0 1 1 2 PPHLN1 chr12:42839793 3'AG 42839793 Downstream 50bp
chr12 57975228 57975228 1 + C A LUAD 57975224 + 57975204 57975244 41 CCGTCCGGCCTGGCCACTACCCAGCATCCTCACCCACCAAC CCGTCCGGCCTGGCCACTACCCAGAATCCTCACCCACCAAC < 41bp 0.293355813966635 0.716257610278437 0.043287426 0.33536035 prediction 0.432515220556873 Functional Gain - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57975224 chr12:57975228 nonsynonymous SNV 0.474 1 25 hm5C_associated_SNPs_121475 0 0 0 0 1 KIF5A chr12:57975198 3'AG 57975198 Downstream 31bp
chr17 65714118 65714118 1 + C A SKCM 65714114 + 65714094 65714134 41 TCTTCGGTAGTCCTGAGCGCCGGGCCTGAAGGACTCCTAGG TCTTCGGTAGTCCTGAGCGCCGGGACTGAAGGACTCCTAGG < 41bp 0.708426746275944 0.924677479608913 0.73709494 0.8358849 prediction 0.432501466665938 Functional Gain - NOL11 ENSG00000130935 CDS Human protein_coding chr17:65714114 chr17:65714118 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_121480 0 0 1 0 1 NOL11 chr17:65714204 5'GT 65714204 Upstream 87bp
chr9 128678140 128678140 1 + A G STAD 128678137 + 128678117 128678157 41 TCAGATAACTCTATTGAACACTCAGATTACAGAGCCAAATT TCAGATAACTCTATTGAACACTCGGATTACAGAGCCAAATT < 41bp 0.536793435554325 0.753042452994239 0.07916203 0.10047409 prediction 0.432498034879827 Functional Gain - PBX3 ENSG00000167081 CDS Human protein_coding chr9:128678137 chr9:128678140 synonymous SNV . 0 24 hm5C_associated_SNPs_121481 0 0 1 0 1 PBX3 chr9:128678206 5'GT 128678206 Upstream 67bp
chr16 20491952 20491952 1 + C T UCEC 20491951 + 20491931 20491971 41 GACTTTTGGCTCCTTGGAGACCGGGGAATCAAAGATGAAGA GACTTTTGGCTCCTTGGAGACTGGGGAATCAAAGATGAAGA < 41bp 0.468228867281518 0.716238330440908 0.90236074 0.30649555 prediction 0.432476660881816 Functional Gain - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20491951 chr16:20491952 nonsynonymous SNV 0.200 3 22 hm5C_associated_SNPs_121483 0 0 0 0 2 ACSM2A chr16:20491895 3'AG 20491895 Downstream 58bp
chr16 20491952 20491952 1 + C T UCEC 20491951 + 20491931 20491971 41 GACTTTTGGCTCCTTGGAGACCGGGGAATCAAAGATGAAGA GACTTTTGGCTCCTTGGAGACTGGGGAATCAAAGATGAAGA < 41bp 0.468228867281518 0.716238330440908 0.90236074 0.30649555 prediction 0.432476660881816 Functional Gain - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20491951 chr16:20491952 nonsynonymous SNV 0.200 3 22 hm5C_associated_SNPs_121483 0 0 0 0 2 ACSM2A chr16:20492022 5'GT 20492022 Upstream 71bp
chr6 144507778 144507778 1 + T A LUSC 144507774 + 144507754 144507794 41 TTGCAGGCAAAATGAAAGACCGGCTAGCAGAACTTCTGGAC TTGCAGGCAAAATGAAAGACCGGCAAGCAGAACTTCTGGAC < 41bp 0.39576577599833 0.716234740271575 0.2303589 0.22631237 prediction 0.43246948054315 Functional Gain - STX11 ENSG00000135604 CDS Human protein_coding chr6:144507774 chr6:144507778 nonsynonymous SNV 0.892 3 25 hm5C_associated_SNPs_121486 0 0 0 0 1 STX11 chr6:144507760 3'AG 144507760 Downstream 19bp
chr14 24524987 24524987 1 + C T LUSC 24524986 + 24524966 24525006 41 AGAGCTGGTGCTGGACAACGCCGGGCTTAAGACGTGAGGCC AGAGCTGGTGCTGGACAACGCTGGGCTTAAGACGTGAGGCC < 41bp 0.554376557211157 0.770609255204168 0.8930335 0.6535716 prediction 0.432465395986023 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24524986 chr14:24524987 synonymous SNV . 0 22 hm5C_associated_SNPs_121487 0 0 0 0 2 CARMIL3 chr14:24524910 3'AG 24524910 Downstream 78bp
chr14 24524987 24524987 1 + C T LUSC 24524986 + 24524966 24525006 41 AGAGCTGGTGCTGGACAACGCCGGGCTTAAGACGTGAGGCC AGAGCTGGTGCTGGACAACGCTGGGCTTAAGACGTGAGGCC < 41bp 0.554376557211157 0.770609255204168 0.8930335 0.6535716 prediction 0.432465395986023 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24524986 chr14:24524987 synonymous SNV . 0 22 hm5C_associated_SNPs_121487 0 0 0 0 2 CARMIL3 chr14:24524998 5'GT 24524998 Upstream 12bp
chr21 45937658 45937658 1 + C T rs146120102 45937657 + 45937637 45937677 41 AACACTGAGCCCTCCTACCTCCTGATATCCAGGGCTGCCGA AACACTGAGCCCTCCTACCTCTTGATATCCAGGGCTGCCGA < 41bp 0.517328460015126 0.733554617485098 0.08760533 0.24188608 prediction 0.432452314939944 Functional Gain - TSPEAR-AS2 ENSG00000182912 UTR5 Human antisense chr21:45937657 chr21:45937658 . . 0 22 hm5C_associated_SNPs_121492 0 0 1 9 1 TSPEAR-AS2 chr21:45937718 5'GT 45937718 Upstream 61bp
chr2 189870168 189870168 1 + T A ESCA 189870164 + 189870144 189870184 41 TCCTGGTCTGGCTGGTACAGCTGGTGAACCTGGAAGAGATG TCCTGGTCTGGCTGGTACAGCTGGAGAACCTGGAAGAGATG < 41bp 0.389240458592106 0.716210732316083 0.784801 0.59207946 prediction 0.432421464632167 Functional Gain - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189870164 chr2:189870168 synonymous SNV . 0 25 hm5C_associated_SNPs_121500 0 0 1 0 1 COL3A1 chr2:189870183 5'GT 189870183 Upstream 16bp
chr10 98092287 98092287 1 + T C LIHC 98092285 + 98092265 98092305 41 GAAAGACCTGGAAGGCCATCCGTGTGGATTTAGTTCTGTGC GAAAGACCTGGAAGGCCATCCGCGTGGATTTAGTTCTGTGC < 41bp 0.435408412471662 0.716207045172981 0.17467088 0.17290792 prediction 0.432414090345961 Functional Gain - DNTT ENSG00000107447 CDS Human protein_coding chr10:98092285 chr10:98092287 synonymous SNV . 0 23 hm5C_associated_SNPs_121502 0 0 0 0 1 DNTT chr10:98092353 5'GT 98092353 Upstream 67bp
chr8 66557008 66557008 1 + C A rs151238942 66557004 + 66556984 66557024 41 GGAGCCGGAGAGGGTGCTGGCTGCCGCGCGGCCGAGGTGAG GGAGCCGGAGAGGGTGCTGGCTGCAGCGCGGCCGAGGTGAG < 41bp 0.687880675111685 0.904087524857867 0.08059326 0.2887256 prediction 0.432413699492364 Functional Gain - MTFR1 ENSG00000066855 UTR5 Human protein_coding chr8:66557004 chr8:66557008 . . 0 25 hm5C_associated_SNPs_121503 0 0 1 0 1 MTFR1 chr8:66557019 5'GT 66557019 Upstream 12bp
chr13 114188379 114188379 1 + C T COAD 114188378 + 114188358 114188398 41 AGCATTGTCGTGGAAGTTCTCCGAATCCTGGTTTTGATTGG AGCATTGTCGTGGAAGTTCTCTGAATCCTGGTTTTGATTGG < 41bp 0.591119180683023 0.807322954685782 0.8938838 0.36053932 prediction 0.432407548005517 Functional Gain - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114188378 chr13:114188379 stopgain 0.008 1 22 hm5C_associated_SNPs_121505 0 0 1 0 1 TMCO3 chr13:114188360 3'AG 114188360 Downstream 20bp
chrX 144899486 144899486 1 + C T rs369252596 144899485 + 144899465 144899505 41 CGGTGCCGGCTCCTTTGCCTCCCCGAGTCGCAGATGCTGCG CGGTGCCGGCTCCTTTGCCTCTCCGAGTCGCAGATGCTGCG < 41bp 0.51055943409276 0.726760988738571 0.14024574 0.19864246 prediction 0.432403109291621 Functional Gain - SLITRK2 ENSG00000185985 UTR5 Human protein_coding chrX:144899485 chrX:144899486 . . 0 22 hm5C_associated_SNPs_121506 0 0 0 0 1 SLITRK2 chrX:144899544 5'GT 144899544 Upstream 59bp
chr1 47278227 47278227 1 + C A SKCM 47278223 + 47278203 47278243 41 TTGCAGCACCGCAAGCTGCTCACACCTGGCTTTCATTATGA TTGCAGCACCGCAAGCTGCTCACAACTGGCTTTCATTATGA < 41bp 0.294750760456419 0.716201465627728 0.0287202 0.054066062 prediction 0.432402931255456 Functional Gain - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47278223 chr1:47278227 nonsynonymous SNV 0.006 4 25 hm5C_associated_SNPs_121507 0 0 0 0 2 CYP4B1 chr1:47278168 3'AG 47278168 Downstream 60bp
chr1 47278227 47278227 1 + C A SKCM 47278223 + 47278203 47278243 41 TTGCAGCACCGCAAGCTGCTCACACCTGGCTTTCATTATGA TTGCAGCACCGCAAGCTGCTCACAACTGGCTTTCATTATGA < 41bp 0.294750760456419 0.716201465627728 0.0287202 0.054066062 prediction 0.432402931255456 Functional Gain - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47278223 chr1:47278227 nonsynonymous SNV 0.006 4 25 hm5C_associated_SNPs_121507 0 0 0 0 2 CYP4B1 chr1:47278295 5'GT 47278295 Upstream 69bp
chr11 68707007 68707007 1 + T C UCEC 68707005 + 68706985 68707025 41 TCTTGTGTCCTCCCCAGATCCATGGCTGCGGTGAGAGGGCT TCTTGTGTCCTCCCCAGATCCACGGCTGCGGTGAGAGGGCT < 41bp 0.458773324948826 0.716200352509401 0.13090923 0.17906475 prediction 0.432400705018802 Functional Gain - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68707005 chr11:68707007 synonymous SNV . 0 23 hm5C_associated_SNPs_121508 0 0 1 0 1 IGHMBP2 chr11:68707002 3'AG 68707002 Downstream 6bp
chr12 104682758 104682758 1 + C G SKCM 104682757 + 104682737 104682777 41 CTCGGAATTGGCCGCGGAAACCGATCTGCCCGTTGTGTTTG CTCGGAATTGGCCGCGGAAACGGATCTGCCCGTTGTGTTTG < 41bp 0.401783691632109 0.716196802784948 0.27474898 0.48031905 prediction 0.432393605569896 Functional Gain - TXNRD1 ENSG00000198431 CDS Human protein_coding chr12:104682757 chr12:104682758 synonymous SNV . 0 22 hm5C_associated_SNPs_121509 0 0 1 0 2 TXNRD1 chr12:104682709 3'AG 104682709 Downstream 50bp
chr12 104682758 104682758 1 + C G SKCM 104682757 + 104682737 104682777 41 CTCGGAATTGGCCGCGGAAACCGATCTGCCCGTTGTGTTTG CTCGGAATTGGCCGCGGAAACGGATCTGCCCGTTGTGTTTG < 41bp 0.401783691632109 0.716196802784948 0.27474898 0.48031905 prediction 0.432393605569896 Functional Gain - TXNRD1 ENSG00000198431 CDS Human protein_coding chr12:104682757 chr12:104682758 synonymous SNV . 0 22 hm5C_associated_SNPs_121509 0 0 1 0 2 TXNRD1 chr12:104682818 5'GT 104682818 Upstream 61bp
chr12 113874657 113874657 1 + T C STAD 113874654 + 113874634 113874674 41 AGTGGTGGAGGACACCGAGGCTGTGAGCGCTGTGCAGCAGC AGTGGTGGAGGACACCGAGGCTGCGAGCGCTGTGCAGCAGC < 41bp 0.514959852898608 0.731156469712842 0.42471394 0.613221 prediction 0.432393233628468 Functional Gain - SDSL ENSG00000139410 CDS Human protein_coding chr12:113874654 chr12:113874657 nonsynonymous SNV 0.884 4 24 hm5C_associated_SNPs_121510 0 0 1 0 1 SDSL chr12:113874680 5'GT 113874680 Upstream 24bp
chr3 41274906 41274906 1 + A G UCEC 41274903 + 41274883 41274923 41 TTCAGAACTGTCTTTGGACTCTCAGGAATCTTTCAGATGCT TTCAGAACTGTCTTTGGACTCTCGGGAATCTTTCAGATGCT < 41bp 0.541345174574933 0.757540307443676 0.066877395 0.17430282 prediction 0.432390265737485 Functional Gain - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41274903 chr3:41274906 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_121511 0 0 1 0 2 CTNNB1 chr3:41274832 3'AG 41274832 Downstream 75bp
chr3 41274906 41274906 1 + A G UCEC 41274903 + 41274883 41274923 41 TTCAGAACTGTCTTTGGACTCTCAGGAATCTTTCAGATGCT TTCAGAACTGTCTTTGGACTCTCGGGAATCTTTCAGATGCT < 41bp 0.541345174574933 0.757540307443676 0.066877395 0.17430282 prediction 0.432390265737485 Functional Gain - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41274903 chr3:41274906 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_121511 0 0 1 0 2 CTNNB1 chr3:41274935 5'GT 41274935 Upstream 30bp
chr2 170359664 170359664 1 + T G UCEC 170359661 + 170359641 170359681 41 CAAGATGATGTAGAAATAGACTCTGATGGTCACACGGATGC CAAGATGATGTAGAAATAGACTCGGATGGTCACACGGATGC < 41bp 0.426237290531521 0.716193519643238 0.15674746 0.32071492 prediction 0.432387039286475 Functional Gain - BBS5 ENSG00000163093;ENSG00000251569 CDS Human other chr2:170359661 chr2:170359664 synonymous SNV . 0 24 hm5C_associated_SNPs_121512 0 0 1 0 2 BBS5 chr2:170359605 3'AG 170359605 Downstream 60bp
chr2 170359664 170359664 1 + T G UCEC 170359661 + 170359641 170359681 41 CAAGATGATGTAGAAATAGACTCTGATGGTCACACGGATGC CAAGATGATGTAGAAATAGACTCGGATGGTCACACGGATGC < 41bp 0.426237290531521 0.716193519643238 0.15674746 0.32071492 prediction 0.432387039286475 Functional Gain - BBS5 ENSG00000163093;ENSG00000251569 CDS Human other chr2:170359661 chr2:170359664 synonymous SNV . 0 24 hm5C_associated_SNPs_121512 0 0 1 0 2 BBS5 chr2:170359688 5'GT 170359688 Upstream 25bp
chr7 76132805 76132805 1 + C G rs73703182 76132804 + 76132784 76132824 41 AGAGAAGACGGGGACCCAGCCCCAGGGAAAGATGGAGGTAT AGAGAAGACGGGGACCCAGCCGCAGGGAAAGATGGAGGTAT < 41bp 0.396966246950953 0.716184037084343 0.24367893 0.3620535 prediction 0.432368074168686 Functional Gain - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76132804 chr7:76132805 synonymous SNV . 0 22 hm5C_associated_SNPs_121516 0 0 0 0 2 DTX2 chr7:76132743 3'AG 76132743 Downstream 63bp
chr7 76132805 76132805 1 + C G rs73703182 76132804 + 76132784 76132824 41 AGAGAAGACGGGGACCCAGCCCCAGGGAAAGATGGAGGTAT AGAGAAGACGGGGACCCAGCCGCAGGGAAAGATGGAGGTAT < 41bp 0.396966246950953 0.716184037084343 0.24367893 0.3620535 prediction 0.432368074168686 Functional Gain - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76132804 chr7:76132805 synonymous SNV . 0 22 hm5C_associated_SNPs_121516 0 0 0 0 2 DTX2 chr7:76132904 5'GT 76132904 Upstream 100bp
chr2 233405386 233405386 1 + C T GBM 233405385 + 233405365 233405405 41 GGTGCTGAGGGTGCCGTCCACCATGGTGTGGCGGCCGGATA GGTGCTGAGGGTGCCGTCCACTATGGTGTGGCGGCCGGATA < 41bp 0.466275908036033 0.716178848224685 0.10197452 0.12069842 prediction 0.432357696449369 Functional Gain - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233405385 chr2:233405386 synonymous SNV . 0 22 hm5C_associated_SNPs_121518 0 0 0 0 2 CHRNG chr2:233405312 3'AG 233405312 Downstream 75bp
chr2 233405386 233405386 1 + C T GBM 233405385 + 233405365 233405405 41 GGTGCTGAGGGTGCCGTCCACCATGGTGTGGCGGCCGGATA GGTGCTGAGGGTGCCGTCCACTATGGTGTGGCGGCCGGATA < 41bp 0.466275908036033 0.716178848224685 0.10197452 0.12069842 prediction 0.432357696449369 Functional Gain - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233405385 chr2:233405386 synonymous SNV . 0 22 hm5C_associated_SNPs_121518 0 0 0 0 2 CHRNG chr2:233405421 5'GT 233405421 Upstream 36bp
chr7 154672636 154672636 1 + T A LUSC 154672632 + 154672612 154672652 41 AGCAGTACATTGACAGGACGCGCGTGGCCGTGTTTGGGAAG AGCAGTACATTGACAGGACGCGCGAGGCCGTGTTTGGGAAG < 41bp 0.472596981187683 0.716177590313572 0.22950223 0.29487938 prediction 0.432355180627143 Functional Gain - DPP6 ENSG00000130226 CDS Human protein_coding chr7:154672632 chr7:154672636 nonsynonymous SNV 0.228 4 25 hm5C_associated_SNPs_121519 0 0 0 0 2 DPP6 chr7:154672598 3'AG 154672598 Downstream 39bp
chr7 154672636 154672636 1 + T A LUSC 154672632 + 154672612 154672652 41 AGCAGTACATTGACAGGACGCGCGTGGCCGTGTTTGGGAAG AGCAGTACATTGACAGGACGCGCGAGGCCGTGTTTGGGAAG < 41bp 0.472596981187683 0.716177590313572 0.22950223 0.29487938 prediction 0.432355180627143 Functional Gain - DPP6 ENSG00000130226 CDS Human protein_coding chr7:154672632 chr7:154672636 nonsynonymous SNV 0.228 4 25 hm5C_associated_SNPs_121519 0 0 0 0 2 DPP6 chr7:154672652 5'GT 154672652 Upstream 17bp
chr9 90387878 90387878 1 + A G UCEC 90387875 + 90387855 90387895 41 AGGAATACAGGGAAGGGAAACACAGCTTCACAATGGCCATG AGGAATACAGGGAAGGGAAACACGGCTTCACAATGGCCATG < 41bp 0.571139427263083 0.78731600459133 0.056815147 0.16967139 prediction 0.432353154656494 Functional Gain - CTSL3P ENSG00000188029 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:90387875 chr9:90387878 . . 0 24 hm5C_associated_SNPs_121520 0 0 0 0 1 CTSL3P chr9:90387913 5'GT 90387913 Upstream 36bp
chr12 51636162 51636162 1 + C A OV 51636158 + 51636138 51636178 41 AATGCTGCTCAGCTTGCAGTCATGCAGGGAGCCAACGTCCT AATGCTGCTCAGCTTGCAGTCATGAAGGGAGCCAACGTCCT < 41bp 0.318879572362396 0.716174810824472 0.28896156 0.42559034 prediction 0.432349621648945 Functional Gain - DAZAP2 ENSG00000183283 CDS Human protein_coding chr12:51636158 chr12:51636162 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_121521 0 0 1 0 1 DAZAP2 chr12:51636114 3'AG 51636114 Downstream 49bp
chr12 51207887 51207887 1 + T C COAD 51207884 + 51207864 51207904 41 TTAACCATGACAAATTCAGGCAGTACTCAGCAAGGTACAAC TTAACCATGACAAATTCAGGCAGCACTCAGCAAGGTACAAC < 41bp 0.532870724722803 0.749045523366453 0.06478283 0.03556475 prediction 0.4323495972873 Functional Gain - ATF1 ENSG00000123268 CDS Human protein_coding chr12:51207884 chr12:51207887 synonymous SNV . 0 24 hm5C_associated_SNPs_121522 0 0 1 0 2 ATF1 chr12:51207793 3'AG 51207793 Downstream 95bp
chr12 51207887 51207887 1 + T C COAD 51207884 + 51207864 51207904 41 TTAACCATGACAAATTCAGGCAGTACTCAGCAAGGTACAAC TTAACCATGACAAATTCAGGCAGCACTCAGCAAGGTACAAC < 41bp 0.532870724722803 0.749045523366453 0.06478283 0.03556475 prediction 0.4323495972873 Functional Gain - ATF1 ENSG00000123268 CDS Human protein_coding chr12:51207884 chr12:51207887 synonymous SNV . 0 24 hm5C_associated_SNPs_121522 0 0 1 0 2 ATF1 chr12:51207975 5'GT 51207975 Upstream 89bp
chr10 88718498 88718498 1 + T C UCEC 88718496 + 88718476 88718516 41 TTCTCCATCGCCAAGGAGGGCGTGGTGGGTGCGGTGGAAAA TTCTCCATCGCCAAGGAGGGCGCGGTGGGTGCGGTGGAAAA < 41bp 0.57906379457529 0.795235303313286 0.7635472 0.8033955 prediction 0.432343017475993 Functional Gain - SNCG ENSG00000173267 CDS Human protein_coding chr10:88718496 chr10:88718498 nonsynonymous SNV 0.976 4 23 hm5C_associated_SNPs_121524 0 0 1 0 1 SNCG chr10:88718575 5'GT 88718575 Upstream 78bp
chr2 233322746 233322746 1 + C G rs147248868 233322745 + 233322725 233322765 41 GACACGAAATATGAGATCCACCGAGACCCCACACTGGACCC GACACGAAATATGAGATCCACGGAGACCCCACACTGGACCC < 41bp 0.387768732467844 0.71616921062412 0.11559838 0.47181815 prediction 0.43233842124824 Functional Gain - ALPI ENSG00000163295 CDS Human protein_coding chr2:233322745 chr2:233322746 nonsynonymous SNV 0.006 5 22 hm5C_associated_SNPs_121526 0 0 1 0 1 ALPI chr2:233322708 3'AG 233322708 Downstream 39bp
chr2 27666107 27666107 1 + C T rs144135379 27666106 + 27666086 27666126 41 TGGTACCACTGGATGAGGGGCCGGGACATACTGACTGCCCC TGGTACCACTGGATGAGGGGCTGGGACATACTGACTGCCCC < 41bp 0.573568208772451 0.789735338453199 0.871309 0.5886631 prediction 0.432334259361496 Functional Gain - KRTCAP3 ENSG00000157992 CDS Human protein_coding chr2:27666106 chr2:27666107 nonsynonymous SNV 0.989 0 22 hm5C_associated_SNPs_121530 0 0 0 0 1 KRTCAP3 chr2:27666147 5'GT 27666147 Upstream 41bp
chr1 44173270 44173270 1 + C G rs555297258 44173269 + 44173249 44173289 41 TGTGGGCTCCCGCCGGGGTCCCCCGCGGCTGTCGCCGCCGC TGTGGGCTCCCGCCGGGGTCCGCCGCGGCTGTCGCCGCCGC < 41bp 0.584419036988439 0.800584948431826 0.30554447 0.37638658 prediction 0.432331822886773 Functional Gain - ST3GAL3 ENSG00000236200 ncRNA_intronic Human antisense chr1:44173269 chr1:44173270 . . 0 22 hm5C_associated_SNPs_121532 0 0 1 0 1 ST3GAL3 chr1:44173364 5'GT 44173364 Upstream 95bp
chr2 96874626 96874626 1 + C A rs80229301 96874622 + 96874602 96874642 41 ACCTGGGCCGTGATTGGGCGCGACCTGGGCTCCTGGGTGCT ACCTGGGCCGTGATTGGGCGCGACATGGGCTCCTGGGTGCT < 41bp 0.331773443219082 0.716155445501327 0.19978139 0.3650906 prediction 0.432310891002654 Functional Gain - STARD7-AS1 ENSG00000204685 ncRNA_exonic Human processed_transcript chr2:96874622 chr2:96874626 . . 0 25 hm5C_associated_SNPs_121536 0 0 1 0 1 STARD7-AS1 chr2:96874717 5'GT 96874717 Upstream 92bp
chrX 107147257 107147257 1 + A G LIHC 107147254 + 107147234 107147274 41 AGTTGGTAGAGATCATCCAGCAGAGGAAGCAAATGATCGCT AGTTGGTAGAGATCATCCAGCAGGGGAAGCAAATGATCGCT < 41bp 0.475054685755106 0.716147671721479 0.8790689 0.9078809 prediction 0.432295343442959 Functional Gain - MID2 ENSG00000080561 CDS Human protein_coding chrX:107147254 chrX:107147257 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_121537 0 0 1 0 2 MID2 chrX:107147188 3'AG 107147188 Downstream 70bp
chrX 107147257 107147257 1 + A G LIHC 107147254 + 107147234 107147274 41 AGTTGGTAGAGATCATCCAGCAGAGGAAGCAAATGATCGCT AGTTGGTAGAGATCATCCAGCAGGGGAAGCAAATGATCGCT < 41bp 0.475054685755106 0.716147671721479 0.8790689 0.9078809 prediction 0.432295343442959 Functional Gain - MID2 ENSG00000080561 CDS Human protein_coding chrX:107147254 chrX:107147257 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_121537 0 0 1 0 2 MID2 chrX:107147295 5'GT 107147295 Upstream 39bp
chr11 63986797 63986797 1 + C T HNSC 63986796 + 63986776 63986816 41 GCTGGAGGAGATTGACTGCACCGAGGAGGAGATGATGGTGT GCTGGAGGAGATTGACTGCACTGAGGAGGAGATGATGGTGT < 41bp 0.574157194042504 0.790300710192379 0.22843781 0.25889575 prediction 0.43228703229975 Functional Gain - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63986796 chr11:63986797 synonymous SNV . 0 22 hm5C_associated_SNPs_121540 0 0 1 0 2 FERMT3 chr11:63986723 3'AG 63986723 Downstream 75bp
chr11 63986797 63986797 1 + C T HNSC 63986796 + 63986776 63986816 41 GCTGGAGGAGATTGACTGCACCGAGGAGGAGATGATGGTGT GCTGGAGGAGATTGACTGCACTGAGGAGGAGATGATGGTGT < 41bp 0.574157194042504 0.790300710192379 0.22843781 0.25889575 prediction 0.43228703229975 Functional Gain - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63986796 chr11:63986797 synonymous SNV . 0 22 hm5C_associated_SNPs_121540 0 0 1 0 2 FERMT3 chr11:63986830 5'GT 63986830 Upstream 34bp
chr19 52085052 52085052 1 + C T UCEC 52085051 + 52085031 52085071 41 AATTAACAGGGTATCACATTCCCAACCCAGAGGTCATCTTC AATTAACAGGGTATCACATTCTCAACCCAGAGGTCATCTTC < 41bp 0.460526100685437 0.716141207756723 0.066194355 0.10433647 prediction 0.432282415513446 Functional Gain - ZNF175 ENSG00000105497 CDS Human protein_coding chr19:52085051 chr19:52085052 nonsynonymous SNV 0.858 3 22 hm5C_associated_SNPs_121543 0 0 0 0 1 ZNF175 chr19:52085135 5'GT 52085135 Upstream 84bp
chr4 4411307 4411307 1 + T C UCEC 4411305 + 4411285 4411325 41 CACCTCTGCCCACAGGTCTCCGTGTTGGTCCTCTTCGCCCT CACCTCTGCCCACAGGTCTCCGCGTTGGTCCTCTTCGCCCT < 41bp 0.443412031802257 0.716140078648317 0.32159656 0.31940827 prediction 0.432280157296634 Functional Gain - NSG1 ENSG00000168824 CDS Human protein_coding chr4:4411305 chr4:4411307 nonsynonymous SNV 0.881 1 23 hm5C_associated_SNPs_121544 0 0 0 0 1 NSG1 chr4:4411300 3'AG 4411300 Downstream 8bp
chr11 56950086 56950086 1 + C A LUSC 56950085 + 56950065 56950105 41 CCCTGCAGATCGGTGGCAATCCCTGGGTGTGTGGCTGCACC CCCTGCAGATCGGTGGCAATCACTGGGTGTGTGGCTGCACC < 41bp 0.45529600618793 0.716139692571016 0.10368112 0.09352055 prediction 0.432279385142031 Functional Gain - LRRC55 ENSG00000183908 CDS Human protein_coding chr11:56950085 chr11:56950086 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_121545 0 0 0 0 1 LRRC55 chr11:56950157 5'GT 56950157 Upstream 72bp
chrX 47083802 47083802 1 + T C UCEC 47083800 + 47083780 47083820 41 CCAGAGATTGTGCACGAGGACTTGAAGATGGGGTCTGATGG CCAGAGATTGTGCACGAGGACTCGAAGATGGGGTCTGATGG < 41bp 0.64776890618265 0.863904801173349 0.027423173 0.1387035 prediction 0.432271789981397 Functional Gain - CDK16 ENSG00000102225 CDS Human other chrX:47083800 chrX:47083802 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_121546 0 0 1 0 1 CDK16 chrX:47083784 3'AG 47083784 Downstream 19bp
chr10 120877149 120877149 1 + C T HNSC 120877148 + 120877128 120877168 41 CTTAGTAAGGATTTTGATGCCCGAAAGGCCTACCTGGCTGG CTTAGTAAGGATTTTGATGCCTGAAAGGCCTACCTGGCTGG < 41bp 0.592672665312013 0.808808360509862 0.06917101 0.14510477 prediction 0.432271390395698 Functional Gain - FAM45A ENSG00000119979 CDS Human protein_coding chr10:120877148 chr10:120877149 stopgain 0.948 1 22 hm5C_associated_SNPs_121547 0 0 1 0 1 FAM45A chr10:120877179 5'GT 120877179 Upstream 31bp
chr20 61594048 61594048 1 + C T HNSC 61594047 + 61594027 61594067 41 GCAGAGCATCTTCTATTTCTCCGGCGGCCTCACCTTGCTTT GCAGAGCATCTTCTATTTCTCTGGCGGCCTCACCTTGCTTT < 41bp 0.576225833189844 0.792351341068175 0.87279105 0.40299737 prediction 0.432251015756661 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61594047 chr20:61594048 synonymous SNV . 0 22 hm5C_associated_SNPs_121551 0 0 1 0 2 SLC17A9 chr20:61593976 3'AG 61593976 Downstream 73bp
chr20 61594048 61594048 1 + C T HNSC 61594047 + 61594027 61594067 41 GCAGAGCATCTTCTATTTCTCCGGCGGCCTCACCTTGCTTT GCAGAGCATCTTCTATTTCTCTGGCGGCCTCACCTTGCTTT < 41bp 0.576225833189844 0.792351341068175 0.87279105 0.40299737 prediction 0.432251015756661 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61594047 chr20:61594048 synonymous SNV . 0 22 hm5C_associated_SNPs_121551 0 0 1 0 2 SLC17A9 chr20:61594106 5'GT 61594106 Upstream 59bp
chr5 150042512 150042512 1 + C A LUSC 150042511 + 150042491 150042531 41 TCTCCTCCACAGGATGATCCCCAAGGAGCAGAAGGGGCCAG TCTCCTCCACAGGATGATCCCAAAGGAGCAGAAGGGGCCAG < 41bp 0.440076818843573 0.716124573742392 0.5298473 0.83510196 prediction 0.432249147484784 Functional Gain - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150042511 chr5:150042512 synonymous SNV . 0 22 hm5C_associated_SNPs_121552 0 0 0 0 2 MYOZ3 chr5:150042503 3'AG 150042503 Downstream 10bp
chr5 150042512 150042512 1 + C A LUSC 150042511 + 150042491 150042531 41 TCTCCTCCACAGGATGATCCCCAAGGAGCAGAAGGGGCCAG TCTCCTCCACAGGATGATCCCAAAGGAGCAGAAGGGGCCAG < 41bp 0.440076818843573 0.716124573742392 0.5298473 0.83510196 prediction 0.432249147484784 Functional Gain - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150042511 chr5:150042512 synonymous SNV . 0 22 hm5C_associated_SNPs_121552 0 0 0 0 2 MYOZ3 chr5:150042564 5'GT 150042564 Upstream 53bp
chr7 94058647 94058647 1 + A G COAD 94058644 + 94058624 94058664 41 TGGATGAGGAGACTGGCAACCTGAAAAAGGCTGTCATTCTA TGGATGAGGAGACTGGCAACCTGGAAAAGGCTGTCATTCTA < 41bp 0.502948986998828 0.719072319851678 0.21081007 0.38754556 prediction 0.432246665705698 Functional Gain - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94058644 chr7:94058647 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_121554 0 0 0 0 1 COL1A2 chr7:94058742 5'GT 94058742 Upstream 96bp
chr10 102584698 102584698 1 + C T COAD 102584697 + 102584677 102584717 41 CATCCTCCCTCATGAGCAAGCCGGGGAGGAAGCTTGCAGAA CATCCTCCCTCATGAGCAAGCTGGGGAGGAAGCTTGCAGAA < 41bp 0.555046022971243 0.771167243227899 0.9181924 0.76869476 prediction 0.432242440513313 Functional Gain - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102584697 chr10:102584698 nonsynonymous SNV 0.006 1 22 hm5C_associated_SNPs_121555 0 0 0 0 2 PAX2 chr10:102584659 3'AG 102584659 Downstream 40bp
chr10 102584698 102584698 1 + C T COAD 102584697 + 102584677 102584717 41 CATCCTCCCTCATGAGCAAGCCGGGGAGGAAGCTTGCAGAA CATCCTCCCTCATGAGCAAGCTGGGGAGGAAGCTTGCAGAA < 41bp 0.555046022971243 0.771167243227899 0.9181924 0.76869476 prediction 0.432242440513313 Functional Gain - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102584697 chr10:102584698 nonsynonymous SNV 0.006 1 22 hm5C_associated_SNPs_121555 0 0 0 0 2 PAX2 chr10:102584741 5'GT 102584741 Upstream 44bp
chr19 19649127 19649127 1 + C G rs199719316 19649126 + 19649106 19649146 41 GACCCGAGCACGCCGCGGAGCCCGGACCCTCCCTCGGACGC GACCCGAGCACGCCGCGGAGCGCGGACCCTCCCTCGGACGC < 41bp 0.624112223692873 0.840231534218531 0.8434304 0.8969151 prediction 0.432238621051317 Functional Gain - CILP2 ENSG00000160161 UTR5 Human protein_coding chr19:19649126 chr19:19649127 . . 0 22 hm5C_associated_SNPs_121557 0 0 0 0 1 CILP2 chr19:19649222 5'GT 19649222 Upstream 96bp
chr10 114903766 114903766 1 + T G STAD 114903763 + 114903743 114903783 41 CGTAGGACAAATCCCCCATCCGCTAGGATGGTTAGTACCAC CGTAGGACAAATCCCCCATCCGCGAGGATGGTTAGTACCAC < 41bp 0.546257577302673 0.762376624968384 0.31282586 0.3902043 prediction 0.432238095331422 Functional Gain - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114903763 chr10:114903766 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_121558 0 0 1 0 3 TCF7L2 chr10:114903682 3'AG 114903682 Downstream 85bp
chr10 114903766 114903766 1 + T G STAD 114903763 + 114903743 114903783 41 CGTAGGACAAATCCCCCATCCGCTAGGATGGTTAGTACCAC CGTAGGACAAATCCCCCATCCGCGAGGATGGTTAGTACCAC < 41bp 0.546257577302673 0.762376624968384 0.31282586 0.3902043 prediction 0.432238095331422 Functional Gain - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114903763 chr10:114903766 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_121558 0 0 1 0 3 TCF7L2 chr10:114903772 5'GT 114903772 Upstream 7bp
chr10 114903766 114903766 1 + T G STAD 114903763 + 114903743 114903783 41 CGTAGGACAAATCCCCCATCCGCTAGGATGGTTAGTACCAC CGTAGGACAAATCCCCCATCCGCGAGGATGGTTAGTACCAC < 41bp 0.546257577302673 0.762376624968384 0.31282586 0.3902043 prediction 0.432238095331422 Functional Gain - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114903763 chr10:114903766 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_121558 0 0 1 0 3 TCF7L2 chr10:114903784 5'GT 114903784 Upstream 19bp
chr18 14183721 14183721 1 + C T LUAD 14183720 + 14183700 14183740 41 CTCCTGGTTAACAGAAAATGCCAGATTGATATCTATGACAA CTCCTGGTTAACAGAAAATGCTAGATTGATATCTATGACAA < 41bp 0.511131195903743 0.727248994130995 0.28471047 0.5987469 prediction 0.432235596454504 Functional Gain - ANKRD20A5P ENSG00000186481 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr18:14183720 chr18:14183721 . . 0 22 hm5C_associated_SNPs_121559 0 0 0 0 2 ANKRD20A5P chr18:14183651 3'AG 14183651 Downstream 71bp
chr18 14183721 14183721 1 + C T LUAD 14183720 + 14183700 14183740 41 CTCCTGGTTAACAGAAAATGCCAGATTGATATCTATGACAA CTCCTGGTTAACAGAAAATGCTAGATTGATATCTATGACAA < 41bp 0.511131195903743 0.727248994130995 0.28471047 0.5987469 prediction 0.432235596454504 Functional Gain - ANKRD20A5P ENSG00000186481 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr18:14183720 chr18:14183721 . . 0 22 hm5C_associated_SNPs_121559 0 0 0 0 2 ANKRD20A5P chr18:14183765 5'GT 14183765 Upstream 45bp
chr19 49894152 49894152 1 + C T rs7256629 49894151 + 49894131 49894171 41 GGGGTGGCCCATGGACCTGCCCGAGGGCCCGGTGGGTGGCC GGGGTGGCCCATGGACCTGCCTGAGGGCCCGGTGGGTGGCC < 41bp 0.521943044096086 0.738059553610918 0.58167744 0.3088233 prediction 0.432233019029663 Functional Gain - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49894151 chr19:49894152 synonymous SNV . 0 22 hm5C_associated_SNPs_121560 0 0 0 0 1 CCDC155 chr19:49894183 5'GT 49894183 Upstream 32bp
chr19 12867087 12867087 1 + C A COAD 12867086 + 12867066 12867106 41 CAGCTGCGGCAGCCTTCCTTCCAGGGCTCCACCTTTGACAT CAGCTGCGGCAGCCTTCCTTCAAGGGCTCCACCTTTGACAT < 41bp 0.630857478974507 0.846966661804256 0.89119947 0.895056 prediction 0.432218365659499 Functional Gain - BEST2 ENSG00000039987 CDS Human protein_coding chr19:12867086 chr19:12867087 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_121562 0 0 0 0 1 BEST2 chr19:12867109 5'GT 12867109 Upstream 23bp
chr8 10387101 10387101 1 + C T GBM 10387100 + 10387080 10387120 41 AGGCGGAGGTGGGTGAGTTTCCGTGGCAGGTGAGTATTCAG AGGCGGAGGTGGGTGAGTTTCTGTGGCAGGTGAGTATTCAG < 41bp 0.542508685927497 0.758614213438561 0.8670188 0.55982554 prediction 0.432211055022128 Functional Gain - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10387100 chr8:10387101 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_121563 0 0 0 2 1 PRSS55 chr8:10387017 3'AG 10387017 Downstream 85bp
chr14 77930948 77930948 1 + C T SARC 77930947 + 77930927 77930967 41 TTTTATCTTTTCAGAGTTCACCCAGGGCATGATCTTACCTA TTTTATCTTTTCAGAGTTCACTCAGGGCATGATCTTACCTA < 41bp 0.462451994728802 0.716097372275818 0.041309386 0.028727084 prediction 0.432194744551637 Functional Gain - AHSA1 ENSG00000100591 CDS Human protein_coding chr14:77930947 chr14:77930948 synonymous SNV . 0 22 hm5C_associated_SNPs_121568 0 0 1 0 1 AHSA1 chr14:77931029 5'GT 77931029 Upstream 82bp
chr7 127238576 127238576 1 + C A LUAD 127238572 + 127238552 127238592 41 CACTGGAACTGTGGCAGGATCATCCTGCAGTCCTGCAGGGG CACTGGAACTGTGGCAGGATCATCATGCAGTCCTGCAGGGG < 41bp 0.283161140833033 0.716088575673455 0.050522268 0.08274731 prediction 0.432177151346911 Functional Gain - FSCN3 ENSG00000106328 CDS Human protein_coding chr7:127238572 chr7:127238576 nonsynonymous SNV 0.907 1 25 hm5C_associated_SNPs_121571 0 0 0 0 2 FSCN3 chr7:127238489 3'AG 127238489 Downstream 88bp
chr7 127238576 127238576 1 + C A LUAD 127238572 + 127238552 127238592 41 CACTGGAACTGTGGCAGGATCATCCTGCAGTCCTGCAGGGG CACTGGAACTGTGGCAGGATCATCATGCAGTCCTGCAGGGG < 41bp 0.283161140833033 0.716088575673455 0.050522268 0.08274731 prediction 0.432177151346911 Functional Gain - FSCN3 ENSG00000106328 CDS Human protein_coding chr7:127238572 chr7:127238576 nonsynonymous SNV 0.907 1 25 hm5C_associated_SNPs_121571 0 0 0 0 2 FSCN3 chr7:127238648 5'GT 127238648 Upstream 73bp
chr12 83526043 83526043 1 + C A UCEC 83526042 + 83526022 83526062 41 CTGCACCTCAATGGCAGACTCCAGAAGGCCGAGGCCAACTA CTGCACCTCAATGGCAGACTCAAGAAGGCCGAGGCCAACTA < 41bp 0.56220604185686 0.778290298243627 0.45109132 0.5591784 prediction 0.432168512773536 Functional Gain - TMTC2 ENSG00000179104 CDS Human protein_coding chr12:83526042 chr12:83526043 nonsynonymous SNV 0.069 0 22 hm5C_associated_SNPs_121573 0 0 0 0 1 TMTC2 chr12:83525989 3'AG 83525989 Downstream 55bp
chr14 50176456 50176456 1 + C A LIHC 50176452 + 50176432 50176472 41 TGCACCTCATGGAAGGAGAACTCCCAGCCTCCATGTCAGGA TGCACCTCATGGAAGGAGAACTCCAAGCCTCCATGTCAGGA < 41bp 0.278862656726779 0.7160791922896 0.036388576 0.9484318 prediction 0.432158384579201 Functional Gain - KLHDC1 ENSG00000197776 CDS Human protein_coding chr14:50176452 chr14:50176456 nonsynonymous SNV 0.971 2 25 hm5C_associated_SNPs_121574 0 0 0 0 2 KLHDC1 chr14:50176427 3'AG 50176427 Downstream 30bp
chr14 50176456 50176456 1 + C A LIHC 50176452 + 50176432 50176472 41 TGCACCTCATGGAAGGAGAACTCCCAGCCTCCATGTCAGGA TGCACCTCATGGAAGGAGAACTCCAAGCCTCCATGTCAGGA < 41bp 0.278862656726779 0.7160791922896 0.036388576 0.9484318 prediction 0.432158384579201 Functional Gain - KLHDC1 ENSG00000197776 CDS Human protein_coding chr14:50176452 chr14:50176456 nonsynonymous SNV 0.971 2 25 hm5C_associated_SNPs_121574 0 0 0 0 2 KLHDC1 chr14:50176544 5'GT 50176544 Upstream 89bp
chr19 36027760 36027760 1 + C T STAD 36027759 + 36027739 36027779 41 AGCCTAAGGCTGAAGTAGAGCCCCAGCCACAACCAGAGCCC AGCCTAAGGCTGAAGTAGAGCTCCAGCCACAACCAGAGCCC < 41bp 0.604945633921761 0.821023553234435 0.04065445 0.13621575 prediction 0.432155838625348 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36027759 chr19:36027760 nonsynonymous SNV 0.013 1 22 hm5C_associated_SNPs_121575 0 0 0 0 1 GAPDHS chr19:36027715 3'AG 36027715 Downstream 46bp
chr16 15026484 15026484 1 + C T rs567805637 15026483 + 15026463 15026503 41 GTGGACAGCCGGAGCGGCCACCGGCACCTGGACGGCGACAG GTGGACAGCCGGAGCGGCCACTGGCACCTGGACGGCGACAG < 41bp 0.491905395249631 0.716074412339798 0.7348393 0.44487584 prediction 0.432148824679596 Functional Gain - PKD1P3-NPIPA1 ENSG00000183458 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:15026483 chr16:15026484 . . 0 22 hm5C_associated_SNPs_121576 0 0 0 0 1 PKD1P3-NPIPA1 chr16:15026428 3'AG 15026428 Downstream 57bp
chr13 49719939 49719939 1 + T C COAD 49719936 + 49719916 49719956 41 CTCCGACATCCAGGCAAGGACAGTAGTACTTACCTGGTCAC CTCCGACATCCAGGCAAGGACAGCAGTACTTACCTGGTCAC < 41bp 0.515211999303974 0.731280146858294 0.25551137 0.30942154 prediction 0.43213629510864 Functional Gain - FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49719936 chr13:49719939 nonsynonymous SNV 0.993 0 24 hm5C_associated_SNPs_121579 0 0 1 0 1 FNDC3A chr13:49719914 3'AG 49719914 Downstream 26bp
chr15 64446601 64446601 1 + T C UCEC 64446599 + 64446579 64446619 41 CCCACAGAGTCGCTGCCCAACGTGGTGGTGAATGGTGTGCT CCCACAGAGTCGCTGCCCAACGCGGTGGTGAATGGTGTGCT < 41bp 0.592567098879873 0.808628305250974 0.30643013 0.20351675 prediction 0.432122412742201 Functional Gain - SNX22 ENSG00000157734 CDS Human protein_coding chr15:64446599 chr15:64446601 nonsynonymous SNV 0.715 0 23 hm5C_associated_SNPs_121585 0 0 0 2 1 SNX22 chr15:64446586 3'AG 64446586 Downstream 16bp
chr19 42091845 42091845 1 + C A LAML 42091841 + 42091821 42091861 41 GAGCAGCAGCCCCCAGCCTCCACCCCCGGTGAGTGTCCCTT GAGCAGCAGCCCCCAGCCTCCACCACCGGTGAGTGTCCCTT < 41bp 0.300587900904597 0.7160606230894 0.1299654 0.053872705 prediction 0.4321212461788 Functional Gain - CEACAM21 ENSG00000007129 CDS Human protein_coding chr19:42091841 chr19:42091845 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_121586 0 0 0 0 2 CEACAM21 chr19:42091796 3'AG 42091796 Downstream 50bp
chr19 42091845 42091845 1 + C A LAML 42091841 + 42091821 42091861 41 GAGCAGCAGCCCCCAGCCTCCACCCCCGGTGAGTGTCCCTT GAGCAGCAGCCCCCAGCCTCCACCACCGGTGAGTGTCCCTT < 41bp 0.300587900904597 0.7160606230894 0.1299654 0.053872705 prediction 0.4321212461788 Functional Gain - CEACAM21 ENSG00000007129 CDS Human protein_coding chr19:42091841 chr19:42091845 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_121586 0 0 0 0 2 CEACAM21 chr19:42091848 5'GT 42091848 Upstream 4bp
chr5 148702180 148702180 1 + C T UCEC 148702179 + 148702159 148702199 41 CTCCCACCAGGACGAGGAGCCCGAGCGCCCCACAGGGGCCC CTCCCACCAGGACGAGGAGCCTGAGCGCCCCACAGGGGCCC < 41bp 0.464970732653883 0.716059489525681 0.51514983 0.56446326 prediction 0.432118979051362 Functional Gain - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148702179 chr5:148702180 synonymous SNV . 0 22 hm5C_associated_SNPs_121587 0 0 0 0 1 AFAP1L1 chr5:148702169 3'AG 148702169 Downstream 12bp
chr8 37964588 37964588 1 + T C UCEC 37964586 + 37964566 37964606 41 ATGGATACTCAGGCGGGCTCCGTGGATGAAGAGAATGGCCG ATGGATACTCAGGCGGGCTCCGCGGATGAAGAGAATGGCCG < 41bp 0.622096120398316 0.838151450884562 0.90739197 0.9110691 prediction 0.432110660972491 Functional Gain - ASH2L ENSG00000129691 CDS Human protein_coding chr8:37964586 chr8:37964588 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_121588 0 0 1 0 2 ASH2L chr8:37964539 3'AG 37964539 Downstream 50bp
chr8 37964588 37964588 1 + T C UCEC 37964586 + 37964566 37964606 41 ATGGATACTCAGGCGGGCTCCGTGGATGAAGAGAATGGCCG ATGGATACTCAGGCGGGCTCCGCGGATGAAGAGAATGGCCG < 41bp 0.622096120398316 0.838151450884562 0.90739197 0.9110691 prediction 0.432110660972491 Functional Gain - ASH2L ENSG00000129691 CDS Human protein_coding chr8:37964586 chr8:37964588 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_121588 0 0 1 0 2 ASH2L chr8:37964684 5'GT 37964684 Upstream 97bp
chr2 85769043 85769043 1 + A G TGCT 85769040 + 85769020 85769060 41 CAAGCTAAATGCCAAACTGGCAGAACTACGCCGTAATGGCA CAAGCTAAATGCCAAACTGGCAGGACTACGCCGTAATGGCA < 41bp 0.477093890458306 0.716054302339484 0.64916164 0.9257817 prediction 0.432108604678969 Functional Gain - MAT2A ENSG00000168906 CDS Human protein_coding chr2:85769040 chr2:85769043 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_121591 0 0 1 6 2 MAT2A chr2:85768952 3'AG 85768952 Downstream 92bp
chr2 85769043 85769043 1 + A G TGCT 85769040 + 85769020 85769060 41 CAAGCTAAATGCCAAACTGGCAGAACTACGCCGTAATGGCA CAAGCTAAATGCCAAACTGGCAGGACTACGCCGTAATGGCA < 41bp 0.477093890458306 0.716054302339484 0.64916164 0.9257817 prediction 0.432108604678969 Functional Gain - MAT2A ENSG00000168906 CDS Human protein_coding chr2:85769040 chr2:85769043 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_121591 0 0 1 6 2 MAT2A chr2:85769095 5'GT 85769095 Upstream 53bp
chr19 16339738 16339738 1 + C T LUSC 16339737 + 16339717 16339757 41 TGTGGTCCATCAAGTCCTTCCCGGTGAGCACTCTGTCCAGA TGTGGTCCATCAAGTCCTTCCTGGTGAGCACTCTGTCCAGA < 41bp 0.471896802329891 0.716054037151001 0.25686014 0.20864818 prediction 0.432108074302003 Functional Gain - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16339737 chr19:16339738 nonsynonymous SNV 0.964 4 22 hm5C_associated_SNPs_121592 0 0 1 0 1 AP1M1 chr19:16339739 5'GT 16339739 Upstream 2bp
chr1 25611169 25611169 1 + C G rs139501061 25611165 + 25611145 25611185 41 TGGCCTTCAACCTCTTCATGCTGGCGCTTGGTGTGCAGTGG TGGCCTTCAACCTCTTCATGCTGGGGCTTGGTGTGCAGTGG < 41bp 0.658199156206659 0.874248893630852 0.08924469 0.32980174 prediction 0.432099474848385 Functional Gain - RHD ENSG00000187010 CDS Human protein_coding chr1:25611165 chr1:25611169 nonsynonymous SNV 0.883 3 25 hm5C_associated_SNPs_121593 0 0 0 0 1 RHD chr1:25611250 5'GT 25611250 Upstream 82bp
chr11 86017450 86017450 1 + C A UCEC 86017449 + 86017429 86017469 41 ATCCTGATTCAAATGGAATGCCAGTATGGCAACTCCTAGGA ATCCTGATTCAAATGGAATGCAAGTATGGCAACTCCTAGGA < 41bp 0.464382643392337 0.716046398668442 0.14548028 0.13133189 prediction 0.432092797336884 Functional Gain - HIKESHI ENSG00000149196 CDS Human protein_coding chr11:86017449 chr11:86017450 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_121594 0 0 1 2 1 HIKESHI chr11:86017524 5'GT 86017524 Upstream 75bp
chr4 72053080 72053080 1 + C A rs531094819 72053076 + 72053056 72053096 41 GGCCGCTGCAGCCCCACACTCCGCCGCCAAACTGGAGGAGC GGCCGCTGCAGCCCCACACTCCGCAGCCAAACTGGAGGAGC < 41bp 0.418219875099418 0.716043753439635 0.27330482 0.16508523 prediction 0.43208750687927 Functional Gain - SLC4A4 ENSG00000080493 UTR5 Human protein_coding chr4:72053076 chr4:72053080 . . 0 25 hm5C_associated_SNPs_121595 0 0 0 0 1 SLC4A4 chr4:72053118 5'GT 72053118 Upstream 39bp
chr5 71482512 71482512 1 + C A UCEC 71482511 + 71482491 71482531 41 CGGGCAGTGCTTTGAAAATACCGGAGAGCTCATTCTCCAGT CGGGCAGTGCTTTGAAAATACAGGAGAGCTCATTCTCCAGT < 41bp 0.609980917557405 0.8260200190772 0.8353423 0.7774763 prediction 0.43207820303959 Functional Gain - MAP1B ENSG00000131711 CDS Human protein_coding chr5:71482511 chr5:71482512 synonymous SNV . 0 22 hm5C_associated_SNPs_121599 0 0 1 0 2 MAP1B chr5:71482441 3'AG 71482441 Downstream 72bp
chr5 71482512 71482512 1 + C A UCEC 71482511 + 71482491 71482531 41 CGGGCAGTGCTTTGAAAATACCGGAGAGCTCATTCTCCAGT CGGGCAGTGCTTTGAAAATACAGGAGAGCTCATTCTCCAGT < 41bp 0.609980917557405 0.8260200190772 0.8353423 0.7774763 prediction 0.43207820303959 Functional Gain - MAP1B ENSG00000131711 CDS Human protein_coding chr5:71482511 chr5:71482512 synonymous SNV . 0 22 hm5C_associated_SNPs_121599 0 0 1 0 2 MAP1B chr5:71482581 5'GT 71482581 Upstream 70bp
chr16 3119375 3119375 1 + T G rs185335398 3119372 + 3119352 3119392 41 AATGAAGATACTGACACCACCTTTGCCCTCCCCGTCACCGC AATGAAGATACTGACACCACCTTGGCCCTCCCCGTCACCGC < 41bp 0.343639729016547 0.71603574071765 0.014865547 0.023486912 prediction 0.4320714814353 Functional Gain - IL32 ENSG00000008517 UTR3 Human protein_coding chr16:3119372 chr16:3119375 . . 0 24 hm5C_associated_SNPs_121600 0 0 1 0 1 IL32 chr16:3119282 3'AG 3119282 Downstream 94bp
chr1 214504374 214504374 1 + A G PRAD 214504371 + 214504351 214504391 41 GAGACATGGTCAGATATGCACGCAACGTCATTGAAGAGTTC GAGACATGGTCAGATATGCACGCGACGTCATTGAAGAGTTC < 41bp 0.550602721132245 0.766632812530105 0.06301245 0.23961058 prediction 0.43206018279572 Functional Gain - SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214504371 chr1:214504374 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_121603 0 0 1 0 1 SMYD2 chr1:214504293 3'AG 214504293 Downstream 82bp
chr4 142154959 142154959 1 + A G BRCA 142154956 + 142154936 142154976 41 TTATTGGAAGAACCTTTCATCTGATAAGTATGGTGATACCA TTATTGGAAGAACCTTTCATCTGGTAAGTATGGTGATACCA < 41bp 0.484829409205533 0.716027087912835 0.2402175 0.31333578 prediction 0.43205417582567 Functional Gain - ZNF330 ENSG00000109445 CDS Human protein_coding chr4:142154956 chr4:142154959 nonsynonymous SNV 0.374 1 24 hm5C_associated_SNPs_121606 0 0 1 0 1 ZNF330 chr4:142154869 3'AG 142154869 Downstream 91bp
chr16 67927240 67927240 1 + C A rs35268848 67927239 + 67927219 67927259 41 CCCGGAGATGGCCGGCAGAGCCGCCGAGACGCCGAAGAGCC CCCGGAGATGGCCGGCAGAGCAGCCGAGACGCCGAAGAGCC < 41bp 0.537314643384652 0.75334055337354 0.5927314 0.7319551 prediction 0.432051819977775 Functional Gain - PSKH1 ENSG00000159792 UTR5 Human protein_coding chr16:67927239 chr16:67927240 . . 0 22 hm5C_associated_SNPs_121607 0 0 1 0 1 PSKH1 chr16:67927274 5'GT 67927274 Upstream 35bp
chr4 941545 941545 1 + C T SKCM 941544 + 941524 941564 41 CGCCATGTCCCAGCCCCGGACCCCAGAGCAGGCACTGGATA CGCCATGTCCCAGCCCCGGACTCCAGAGCAGGCACTGGATA < 41bp 0.452391774268775 0.716025647293465 0.6820071 0.946339 prediction 0.432051294586929 Functional Gain - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:941544 chr4:941545 synonymous SNV . 0 22 hm5C_associated_SNPs_121608 0 0 0 0 1 TMEM175 chr4:941497 3'AG 941497 Downstream 49bp
chr10 13658419 13658419 1 + A G UCEC 13658416 + 13658396 13658436 41 AGGCAAATGATGCTTATCTTCAGATGGCCATTGGAAATGCG AGGCAAATGATGCTTATCTTCAGGTGGCCATTGGAAATGCG < 41bp 0.561362502888108 0.777378021202376 0.43766642 0.627025 prediction 0.432031036628536 Functional Gain - PRPF18 ENSG00000165630;ENSG00000239665 CDS Human other chr10:13658416 chr10:13658419 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_121612 0 0 1 0 2 PRPF18 chr10:13658398 3'AG 13658398 Downstream 22bp
chr10 13658419 13658419 1 + A G UCEC 13658416 + 13658396 13658436 41 AGGCAAATGATGCTTATCTTCAGATGGCCATTGGAAATGCG AGGCAAATGATGCTTATCTTCAGGTGGCCATTGGAAATGCG < 41bp 0.561362502888108 0.777378021202376 0.43766642 0.627025 prediction 0.432031036628536 Functional Gain - PRPF18 ENSG00000165630;ENSG00000239665 CDS Human other chr10:13658416 chr10:13658419 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_121612 0 0 1 0 2 PRPF18 chr10:13658460 5'GT 13658460 Upstream 42bp
chr6 32147809 32147809 1 + C A OV 32147808 + 32147788 32147828 41 ATTCCAGCCATTTGGTGATACCGGGGGCTTCCACTTCTCAT ATTCCAGCCATTTGGTGATACAGGGGGCTTCCACTTCTCAT < 41bp 0.552317859766112 0.768328400525751 0.92541814 0.86973137 prediction 0.432021081519278 Functional Gain - RNF5 ENSG00000204308 CDS Human protein_coding chr6:32147808 chr6:32147809 synonymous SNV . 0 22 hm5C_associated_SNPs_121617 0 0 0 0 2 RNF5 chr6:32147786 3'AG 32147786 Downstream 24bp
chr6 32147809 32147809 1 + C A OV 32147808 + 32147788 32147828 41 ATTCCAGCCATTTGGTGATACCGGGGGCTTCCACTTCTCAT ATTCCAGCCATTTGGTGATACAGGGGGCTTCCACTTCTCAT < 41bp 0.552317859766112 0.768328400525751 0.92541814 0.86973137 prediction 0.432021081519278 Functional Gain - RNF5 ENSG00000204308 CDS Human protein_coding chr6:32147808 chr6:32147809 synonymous SNV . 0 22 hm5C_associated_SNPs_121617 0 0 0 0 2 RNF5 chr6:32147903 5'GT 32147903 Upstream 95bp
chr19 36278137 36278137 1 + C T SKCM 36278136 + 36278116 36278156 41 GCGCCCTGGGGGTGCCCCACCCCCGCCCCCTAAGAACCCAG GCGCCCTGGGGGTGCCCCACCTCCGCCCCCTAAGAACCCAG < 41bp 0.45008341997733 0.716007756524425 0.27285495 0.27927262 prediction 0.43201551304885 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36278136 chr19:36278137 synonymous SNV . 0 22 hm5C_associated_SNPs_121619 0 0 0 0 1 ARHGAP33 chr19:36278070 3'AG 36278070 Downstream 68bp
chr3 138668431 138668431 1 + C A LUAD 138668430 + 138668410 138668450 41 GAAGGGCTGGAATCGGTCTCCCCAAGATGTGCCTTCACATG GAAGGGCTGGAATCGGTCTCCACAAGATGTGCCTTCACATG < 41bp 0.616671428232718 0.832672974030942 0.19943771 0.7452636 prediction 0.432003091596447 Functional Gain - FOXL2NB ENSG00000206262 CDS Human protein_coding chr3:138668430 chr3:138668431 nonsynonymous SNV 0.004 3 22 hm5C_associated_SNPs_121621 0 0 0 0 2 FOXL2NB chr3:138668354 3'AG 138668354 Downstream 78bp
chr3 138668431 138668431 1 + C A LUAD 138668430 + 138668410 138668450 41 GAAGGGCTGGAATCGGTCTCCCCAAGATGTGCCTTCACATG GAAGGGCTGGAATCGGTCTCCACAAGATGTGCCTTCACATG < 41bp 0.616671428232718 0.832672974030942 0.19943771 0.7452636 prediction 0.432003091596447 Functional Gain - FOXL2NB ENSG00000206262 CDS Human protein_coding chr3:138668430 chr3:138668431 nonsynonymous SNV 0.004 3 22 hm5C_associated_SNPs_121621 0 0 0 0 2 FOXL2NB chr3:138668362 3'AG 138668362 Downstream 70bp
chr6 161152903 161152903 1 + C A LUAD 161152902 + 161152882 161152922 41 TTTTCACTCCAGAGACAAATCCACGGGCGGGTCTGGAAAAA TTTTCACTCCAGAGACAAATCAACGGGCGGGTCTGGAAAAA < 41bp 0.447219904844549 0.715998182377957 0.84318674 0.70764875 prediction 0.431996364755913 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161152902 chr6:161152903 nonsynonymous SNV 0.943 3 22 hm5C_associated_SNPs_121622 0 0 0 0 1 PLG chr6:161152925 5'GT 161152925 Upstream 23bp
chr14 23946517 23946517 1 + C A UCEC 23946513 + 23946493 23946533 41 CTCACAACTTCATTCCCTTACACACTTCAGTGACATCAGTG CTCACAACTTCATTCCCTTACACAATTCAGTGACATCAGTG < 41bp 0.295017331526558 0.715984880463965 0.041755557 0.044169486 prediction 0.43196976092793 Functional Gain - NGDN ENSG00000129460 CDS Human protein_coding chr14:23946513 chr14:23946517 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_121627 0 0 1 0 1 NGDN chr14:23946565 5'GT 23946565 Upstream 49bp
chr1 65877036 65877036 1 + T C OV 65877034 + 65877014 65877054 41 ACCAAGTGGAAACCAGTTGGCATGGCAGACCTGGTAACACC ACCAAGTGGAAACCAGTTGGCACGGCAGACCTGGTAACACC < 41bp 0.43476830333648 0.715981781025986 0.6094448 0.537956 prediction 0.431963562051971 Functional Gain - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65877034 chr1:65877036 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_121628 0 0 1 0 1 DNAJC6 chr1:65877109 5'GT 65877109 Upstream 74bp
chr3 127981042 127981042 1 + C T SARC 127981041 + 127981021 127981061 41 AGGCCCCCGAAACTGAAGCTCCACAGGGCATTCCAGAGCTC AGGCCCCCGAAACTGAAGCTCTACAGGGCATTCCAGAGCTC < 41bp 0.452440870402499 0.715977474809774 0.28206256 0.9068519 prediction 0.431954949619548 Functional Gain - EEFSEC ENSG00000132394 CDS Human protein_coding chr3:127981041 chr3:127981042 nonsynonymous SNV 0.986 2 22 hm5C_associated_SNPs_121629 0 0 1 0 2 EEFSEC chr3:127980971 3'AG 127980971 Downstream 72bp
chr3 127981042 127981042 1 + C T SARC 127981041 + 127981021 127981061 41 AGGCCCCCGAAACTGAAGCTCCACAGGGCATTCCAGAGCTC AGGCCCCCGAAACTGAAGCTCTACAGGGCATTCCAGAGCTC < 41bp 0.452440870402499 0.715977474809774 0.28206256 0.9068519 prediction 0.431954949619548 Functional Gain - EEFSEC ENSG00000132394 CDS Human protein_coding chr3:127981041 chr3:127981042 nonsynonymous SNV 0.986 2 22 hm5C_associated_SNPs_121629 0 0 1 0 2 EEFSEC chr3:127981067 5'GT 127981067 Upstream 26bp
chr3 44754209 44754209 1 + C G rs551514661 44754208 + 44754188 44754228 41 CTGGGAGCGCCTGCGCCGCTCCGCGGAGAGTCCGTGGATCT CTGGGAGCGCCTGCGCCGCTCGGCGGAGAGTCCGTGGATCT < 41bp 0.644250361717836 0.860227128132184 0.4883355 0.8349266 prediction 0.431953532828695 Functional Gain - ZNF502 ENSG00000196653 UTR5 Human protein_coding chr3:44754208 chr3:44754209 . . 0 22 hm5C_associated_SNPs_121630 0 0 0 0 1 ZNF502 chr3:44754232 5'GT 44754232 Upstream 24bp
chr1 179033214 179033214 1 + C T STAD 179033213 + 179033193 179033233 41 CACCCATGGGGCAGGACTTACCGAGAAGGCAAATTGGCCAG CACCCATGGGGCAGGACTTACTGAGAAGGCAAATTGGCCAG < 41bp 0.598572106526632 0.81454757752952 0.63297004 0.3360119 prediction 0.431950942005777 Functional Gain - FAM20B ENSG00000116199 CDS Human protein_coding chr1:179033213 chr1:179033214 stopgain 1.000 1 22 hm5C_associated_SNPs_121631 0 0 1 0 1 FAM20B chr1:179033233 5'GT 179033233 Upstream 20bp
chr20 57899407 57899407 1 + A G STAD 57899404 + 57899384 57899424 41 AGGTTGAAGTCAAGGACCAACAAAGCAAGCAGGCTTTAGAC AGGTTGAAGTCAAGGACCAACAAGGCAAGCAGGCTTTAGAC < 41bp 0.558808016721213 0.774781650084455 0.90325236 0.4854107 prediction 0.431947266726483 Functional Gain - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57899404 chr20:57899407 nonsynonymous SNV 0.019 1 24 hm5C_associated_SNPs_121634 0 0 0 0 2 EDN3 chr20:57899382 3'AG 57899382 Downstream 26bp
chr20 57899407 57899407 1 + A G STAD 57899404 + 57899384 57899424 41 AGGTTGAAGTCAAGGACCAACAAAGCAAGCAGGCTTTAGAC AGGTTGAAGTCAAGGACCAACAAGGCAAGCAGGCTTTAGAC < 41bp 0.558808016721213 0.774781650084455 0.90325236 0.4854107 prediction 0.431947266726483 Functional Gain - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57899404 chr20:57899407 nonsynonymous SNV 0.019 1 24 hm5C_associated_SNPs_121634 0 0 0 0 2 EDN3 chr20:57899386 3'AG 57899386 Downstream 22bp
chr11 34129797 34129797 1 + C T UCEC 34129796 + 34129776 34129816 41 CATCGGAAAAAGGTGGATAACCGAATCCGGATTCTCATTGA CATCGGAAAAAGGTGGATAACTGAATCCGGATTCTCATTGA < 41bp 0.583788241565371 0.799760765793858 0.28880012 0.1818189 prediction 0.431945048456974 Functional Gain - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129796 chr11:34129797 stopgain 0.997 1 22 hm5C_associated_SNPs_121635 0 0 1 0 2 NAT10 chr11:34129758 3'AG 34129758 Downstream 40bp
chr11 34129797 34129797 1 + C T UCEC 34129796 + 34129776 34129816 41 CATCGGAAAAAGGTGGATAACCGAATCCGGATTCTCATTGA CATCGGAAAAAGGTGGATAACTGAATCCGGATTCTCATTGA < 41bp 0.583788241565371 0.799760765793858 0.28880012 0.1818189 prediction 0.431945048456974 Functional Gain - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129796 chr11:34129797 stopgain 0.997 1 22 hm5C_associated_SNPs_121635 0 0 1 0 2 NAT10 chr11:34129880 5'GT 34129880 Upstream 84bp
chr10 134511342 134511342 1 + T C UCEC 134511339 + 134511319 134511359 41 GCTAAGAAGTATAGAAAGGTCGCTGGCAAAGAGATCTACTC GCTAAGAAGTATAGAAAGGTCGCCGGCAAAGAGATCTACTC < 41bp 0.512490149484465 0.728461736362041 0.12717661 0.17052263 prediction 0.431943173755151 Functional Gain - INPP5A ENSG00000068383 CDS Human protein_coding chr10:134511339 chr10:134511342 synonymous SNV . 0 24 hm5C_associated_SNPs_121636 0 0 0 0 2 INPP5A chr10:134511320 3'AG 134511320 Downstream 23bp
chr10 134511342 134511342 1 + T C UCEC 134511339 + 134511319 134511359 41 GCTAAGAAGTATAGAAAGGTCGCTGGCAAAGAGATCTACTC GCTAAGAAGTATAGAAAGGTCGCCGGCAAAGAGATCTACTC < 41bp 0.512490149484465 0.728461736362041 0.12717661 0.17052263 prediction 0.431943173755151 Functional Gain - INPP5A ENSG00000068383 CDS Human protein_coding chr10:134511339 chr10:134511342 synonymous SNV . 0 24 hm5C_associated_SNPs_121636 0 0 0 0 2 INPP5A chr10:134511423 5'GT 134511423 Upstream 82bp
chr19 50188254 50188254 1 + T C STAD 50188252 + 50188232 50188272 41 AAGGAGCCCCTAGTGGATGTCGTGGACCCCAAACAGCTGGT AAGGAGCCCCTAGTGGATGTCGCGGACCCCAAACAGCTGGT < 41bp 0.632284396499396 0.848248689252353 0.53972596 0.73352355 prediction 0.431928585505914 Functional Gain - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50188252 chr19:50188254 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_121640 0 0 1 0 1 PRMT1 chr19:50188294 5'GT 50188294 Upstream 41bp
chr1 47571882 47571882 1 + C T SKCM 47571881 + 47571861 47571901 41 GCACCGGTAGTAAACATATCCCGGTTACTCGACAAACCCAT GCACCGGTAGTAAACATATCCTGGTTACTCGACAAACCCAT < 41bp 0.565123709246537 0.781085685966061 0.08938959 0.060010016 prediction 0.431923953439048 Functional Gain - CYP4Z1 ENSG00000186160 CDS Human protein_coding chr1:47571881 chr1:47571882 nonsynonymous SNV 0.000 3 22 hm5C_associated_SNPs_121642 0 0 0 0 2 CYP4Z1 chr1:47571800 3'AG 47571800 Downstream 83bp
chr1 47571882 47571882 1 + C T SKCM 47571881 + 47571861 47571901 41 GCACCGGTAGTAAACATATCCCGGTTACTCGACAAACCCAT GCACCGGTAGTAAACATATCCTGGTTACTCGACAAACCCAT < 41bp 0.565123709246537 0.781085685966061 0.08938959 0.060010016 prediction 0.431923953439048 Functional Gain - CYP4Z1 ENSG00000186160 CDS Human protein_coding chr1:47571881 chr1:47571882 nonsynonymous SNV 0.000 3 22 hm5C_associated_SNPs_121642 0 0 0 0 2 CYP4Z1 chr1:47571933 5'GT 47571933 Upstream 52bp
chr7 100866977 100866977 1 + T C STAD 100866974 + 100866954 100866994 41 AACTTGAGTGTGGCCGAGGGCCCTAACTACCTGACGGCCTG AACTTGAGTGTGGCCGAGGGCCCCAACTACCTGACGGCCTG < 41bp 0.502996173996776 0.718957963314226 0.23695305 0.25717735 prediction 0.4319235786349 Functional Gain - ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100866974 chr7:100866977 synonymous SNV . 0 24 hm5C_associated_SNPs_121643 0 0 1 0 1 ZNHIT1 chr7:100866954 3'AG 100866954 Downstream 24bp
chr6 108616382 108616382 1 + C G LUSC 108616378 + 108616358 108616398 41 GTGCGGGGCCTGGGCCGCCGCTCTCGCTCCTCTGGCCACCG GTGCGGGGCCTGGGCCGCCGCTCTGGCTCCTCTGGCCACCG < 41bp 0.426459183955902 0.715959272651252 0.09800249 0.23288769 prediction 0.431918545302505 Functional Gain - AFG1L ENSG00000135537 CDS Human protein_coding chr6:108616378 chr6:108616382 synonymous SNV . 0 25 hm5C_associated_SNPs_121644 0 0 0 0 1 AFG1L chr6:108616422 5'GT 108616422 Upstream 41bp
chr12 7047134 7047134 1 + C A UCEC 7047133 + 7047113 7047153 41 GGAGAAGGTGCGGCGCGAGGCCGAGCAGCGCGCGCGCGAAG GGAGAAGGTGCGGCGCGAGGCAGAGCAGCGCGCGCGCGAAG < 41bp 0.604897315972227 0.820855584786366 0.37832403 0.9006064 prediction 0.431916537628276 Functional Gain - ATN1 ENSG00000111676 CDS Human protein_coding chr12:7047133 chr12:7047134 synonymous SNV . 0 22 hm5C_associated_SNPs_121645 0 0 1 0 1 ATN1 chr12:7047230 5'GT 7047230 Upstream 97bp
chr2 24406428 24406428 1 + C A CHOL 24406424 + 24406404 24406444 41 GGCCAGGCTGCATGCCAGCTCGCCCTACTTCACTTTCACTT GGCCAGGCTGCATGCCAGCTCGCCATACTTCACTTTCACTT < 41bp 0.295536713154449 0.715955220203643 0.032580703 0.24315917 prediction 0.431910440407287 Functional Gain - FAM228A ENSG00000186453 CDS Human protein_coding chr2:24406424 chr2:24406428 synonymous SNV . 0 25 hm5C_associated_SNPs_121646 0 0 1 0 2 FAM228A chr2:24406364 3'AG 24406364 Downstream 65bp
chr2 24406428 24406428 1 + C A CHOL 24406424 + 24406404 24406444 41 GGCCAGGCTGCATGCCAGCTCGCCCTACTTCACTTTCACTT GGCCAGGCTGCATGCCAGCTCGCCATACTTCACTTTCACTT < 41bp 0.295536713154449 0.715955220203643 0.032580703 0.24315917 prediction 0.431910440407287 Functional Gain - FAM228A ENSG00000186453 CDS Human protein_coding chr2:24406424 chr2:24406428 synonymous SNV . 0 25 hm5C_associated_SNPs_121646 0 0 1 0 2 FAM228A chr2:24406514 5'GT 24406514 Upstream 87bp
chr11 45949527 45949527 1 + C T CESC 45949526 + 45949506 45949546 41 GCAAGGCAGCACTGGTGGTGCCGGCATTCGAGACCCTGCGC GCAAGGCAGCACTGGTGGTGCTGGCATTCGAGACCCTGCGC < 41bp 0.482069219346275 0.715951275365701 0.52178836 0.34369162 prediction 0.431902550731402 Functional Gain - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45949526 chr11:45949527 nonsynonymous SNV 0.946 4 22 hm5C_associated_SNPs_121648 0 0 1 0 2 LARGE2 chr11:45949471 3'AG 45949471 Downstream 57bp
chr11 45949527 45949527 1 + C T CESC 45949526 + 45949506 45949546 41 GCAAGGCAGCACTGGTGGTGCCGGCATTCGAGACCCTGCGC GCAAGGCAGCACTGGTGGTGCTGGCATTCGAGACCCTGCGC < 41bp 0.482069219346275 0.715951275365701 0.52178836 0.34369162 prediction 0.431902550731402 Functional Gain - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45949526 chr11:45949527 nonsynonymous SNV 0.946 4 22 hm5C_associated_SNPs_121648 0 0 1 0 2 LARGE2 chr11:45949620 5'GT 45949620 Upstream 94bp
chr14 104515983 104515983 1 + C T SKCM 104515982 + 104515962 104516002 41 AACCAAGGGAGAAGATTGTTCCCAAGTGGCATGAAAAGCCC AACCAAGGGAGAAGATTGTTCTCAAGTGGCATGAAAAGCCC < 41bp 0.447208359772237 0.71594590154304 0.10702169 0.43563995 prediction 0.431891803086081 Functional Gain - TDRD9 ENSG00000156414 CDS Human protein_coding chr14:104515982 chr14:104515983 nonsynonymous SNV 0.541 2 22 hm5C_associated_SNPs_121650 0 0 0 0 2 TDRD9 chr14:104515945 3'AG 104515945 Downstream 39bp
chr14 104515983 104515983 1 + C T SKCM 104515982 + 104515962 104516002 41 AACCAAGGGAGAAGATTGTTCCCAAGTGGCATGAAAAGCCC AACCAAGGGAGAAGATTGTTCTCAAGTGGCATGAAAAGCCC < 41bp 0.447208359772237 0.71594590154304 0.10702169 0.43563995 prediction 0.431891803086081 Functional Gain - TDRD9 ENSG00000156414 CDS Human protein_coding chr14:104515982 chr14:104515983 nonsynonymous SNV 0.541 2 22 hm5C_associated_SNPs_121650 0 0 0 0 2 TDRD9 chr14:104516017 5'GT 104516017 Upstream 35bp
chr5 121311051 121311051 1 + A G rs61734324 121311048 + 121311028 121311068 41 GTTAAAAAACCAAAGACGGGCGCAAAGATTGCTTGAAGAAA GTTAAAAAACCAAAGACGGGCGCGAAGATTGCTTGAAGAAA < 41bp 0.556585247572682 0.772530512524341 0.012242019 0.020133436 prediction 0.431890529903318 Functional Gain - SRFBP1 ENSG00000151304 CDS Human protein_coding chr5:121311048 chr5:121311051 nonsynonymous SNV 0.865 3 24 hm5C_associated_SNPs_121651 0 0 1 0 2 SRFBP1 chr5:121311010 3'AG 121311010 Downstream 42bp
chr5 121311051 121311051 1 + A G rs61734324 121311048 + 121311028 121311068 41 GTTAAAAAACCAAAGACGGGCGCAAAGATTGCTTGAAGAAA GTTAAAAAACCAAAGACGGGCGCGAAGATTGCTTGAAGAAA < 41bp 0.556585247572682 0.772530512524341 0.012242019 0.020133436 prediction 0.431890529903318 Functional Gain - SRFBP1 ENSG00000151304 CDS Human protein_coding chr5:121311048 chr5:121311051 nonsynonymous SNV 0.865 3 24 hm5C_associated_SNPs_121651 0 0 1 0 2 SRFBP1 chr5:121311082 5'GT 121311082 Upstream 32bp
chr17 38024650 38024650 1 + C T COAD 38024649 + 38024629 38024669 41 CTCTCCGCGGTGCTCTGGTGCCTCACAGGAGGTGGGGCTCC CTCTCCGCGGTGCTCTGGTGCTTCACAGGAGGTGGGGCTCC < 41bp 0.531347386958539 0.747284176664088 0.18823802 0.40111676 prediction 0.431873579411099 Functional Gain - ZPBP2 ENSG00000186075 CDS Human protein_coding chr17:38024649 chr17:38024650 nonsynonymous SNV 0.782 3 22 hm5C_associated_SNPs_121659 0 0 0 0 1 ZPBP2 chr17:38024659 5'GT 38024659 Upstream 10bp
chr17 78086482 78086482 1 + C T SKCM 78086481 + 78086461 78086501 41 GACGGGGGACGTGTGGAGCTCCTGGGAGCAGCTCGCCTCCT GACGGGGGACGTGTGGAGCTCTTGGGAGCAGCTCGCCTCCT < 41bp 0.561528138078414 0.777461936035174 0.8282539 0.39344108 prediction 0.43186759591352 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78086481 chr17:78086482 synonymous SNV . 0 22 hm5C_associated_SNPs_121661 0 0 1 0 1 GAA chr17:78086510 5'GT 78086510 Upstream 29bp
chr19 49633718 49633718 1 + C T CESC 49633717 + 49633697 49633737 41 GGCCCTGGAGCGGCAGCGCGCCGAGGTGTGCCAGCTGCGGG GGCCCTGGAGCGGCAGCGCGCTGAGGTGTGCCAGCTGCGGG < 41bp 0.549699448883728 0.765630783803968 0.8912799 0.4009055 prediction 0.431862669840479 Functional Gain - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49633717 chr19:49633718 synonymous SNV . 0 22 hm5C_associated_SNPs_121662 0 0 1 0 1 PPFIA3 chr19:49633635 3'AG 49633635 Downstream 84bp
chr17 48818559 48818559 1 + A G COAD 48818556 + 48818536 48818576 41 GCAGAAGTAGAACGTAGGATCAGACGAGGCCATGCTCGTTT GCAGAAGTAGAACGTAGGATCAGGCGAGGCCATGCTCGTTT < 41bp 0.568199292580637 0.784128915440613 0.5890812 0.9070493 prediction 0.431859245719951 Functional Gain - LUC7L3 ENSG00000108848 CDS Human protein_coding chr17:48818556 chr17:48818559 synonymous SNV . 0 24 hm5C_associated_SNPs_121663 0 0 1 0 2 LUC7L3 chr17:48818463 3'AG 48818463 Downstream 97bp
chr17 48818559 48818559 1 + A G COAD 48818556 + 48818536 48818576 41 GCAGAAGTAGAACGTAGGATCAGACGAGGCCATGCTCGTTT GCAGAAGTAGAACGTAGGATCAGGCGAGGCCATGCTCGTTT < 41bp 0.568199292580637 0.784128915440613 0.5890812 0.9070493 prediction 0.431859245719951 Functional Gain - LUC7L3 ENSG00000108848 CDS Human protein_coding chr17:48818556 chr17:48818559 synonymous SNV . 0 24 hm5C_associated_SNPs_121663 0 0 1 0 2 LUC7L3 chr17:48818607 5'GT 48818607 Upstream 49bp
chr16 29816330 29816330 1 + C T SKCM 29816329 + 29816309 29816349 41 ATCGTGGGCTGGCGGGAGCTCCACGGCCCCTTCAGCCAGGT ATCGTGGGCTGGCGGGAGCTCTACGGCCCCTTCAGCCAGGT < 41bp 0.597450978335988 0.81337777913513 0.8001789 0.817435 prediction 0.431853601598284 Functional Gain - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29816329 chr16:29816330 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_121665 0 0 1 0 1 KIF22 chr16:29816347 5'GT 29816347 Upstream 18bp
chr11 4142935 4142935 1 + A G UCEC 4142932 + 4142912 4142952 41 GGAAAGGAAGAGCAGCGTGCCAGAGATCTTTTCTTTGCTCT GGAAAGGAAGAGCAGCGTGCCAGGGATCTTTTCTTTGCTCT < 41bp 0.479871455077233 0.715923723784859 0.7458017 0.8798717 prediction 0.431847447569718 Functional Gain - RRM1 ENSG00000167325 CDS Human protein_coding chr11:4142932 chr11:4142935 synonymous SNV . 0 24 hm5C_associated_SNPs_121667 0 0 1 0 1 RRM1 chr11:4142995 5'GT 4142995 Upstream 61bp
chr1 27676954 27676954 1 + C T HNSC 27676953 + 27676933 27676973 41 TGAAGAAACGGAATCTGAATCCGGTTTTCAACGAGACTCTC TGAAGAAACGGAATCTGAATCTGGTTTTCAACGAGACTCTC < 41bp 0.528358520197371 0.744282030087218 0.7970369 0.44796214 prediction 0.431847019779694 Functional Gain - SYTL1 ENSG00000142765 CDS Human protein_coding chr1:27676953 chr1:27676954 nonsynonymous SNV 0.965 5 22 hm5C_associated_SNPs_121668 0 0 1 0 2 SYTL1 chr1:27676880 3'AG 27676880 Downstream 75bp
chr1 27676954 27676954 1 + C T HNSC 27676953 + 27676933 27676973 41 TGAAGAAACGGAATCTGAATCCGGTTTTCAACGAGACTCTC TGAAGAAACGGAATCTGAATCTGGTTTTCAACGAGACTCTC < 41bp 0.528358520197371 0.744282030087218 0.7970369 0.44796214 prediction 0.431847019779694 Functional Gain - SYTL1 ENSG00000142765 CDS Human protein_coding chr1:27676953 chr1:27676954 nonsynonymous SNV 0.965 5 22 hm5C_associated_SNPs_121668 0 0 1 0 2 SYTL1 chr1:27676976 5'GT 27676976 Upstream 23bp
chr3 14183183 14183183 1 + T C UCEC 14183181 + 14183161 14183201 41 ACCTCGCTGACCCTGCTGACCGTGGCGGCTGGCTGGCTCTT ACCTCGCTGACCCTGCTGACCGCGGCGGCTGGCTGGCTCTT < 41bp 0.610268409208422 0.826182075414712 0.77850974 0.87899554 prediction 0.43182733241258 Functional Gain - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14183181 chr3:14183183 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_121671 0 0 1 0 1 TMEM43 chr3:14183093 3'AG 14183093 Downstream 91bp
chr10 95995780 95995780 1 + C T UCEC 95995779 + 95995759 95995799 41 AACAGCATCTTTCAGGTCATCCGGAGCTGCAATCGAAGTCT AACAGCATCTTTCAGGTCATCTGGAGCTGCAATCGAAGTCT < 41bp 0.471348880731767 0.715911764265125 0.6613496 0.78822786 prediction 0.431823528530251 Functional Gain - PLCE1 ENSG00000138193 CDS Human protein_coding chr10:95995779 chr10:95995780 nonsynonymous SNV 0.840 4 22 hm5C_associated_SNPs_121672 1 0 0 0 1 PLCE1 chr10:95995877 5'GT 95995877 Upstream 98bp
chr17 40717318 40717318 1 + C G BLCA 40717314 + 40717294 40717334 41 TGGCCCGAGAGGAGATGGATCGGGCTGTGGCTGAGGGTGAG TGGCCCGAGAGGAGATGGATCGGGGTGTGGCTGAGGGTGAG < 41bp 0.657555466202111 0.873460078883029 0.85883045 0.9092076 prediction 0.431809225361837 Functional Gain - COASY ENSG00000068120 CDS Human protein_coding chr17:40717314 chr17:40717318 nonsynonymous SNV 0.985 3 25 hm5C_associated_SNPs_121677 0 0 1 0 1 COASY chr17:40717245 3'AG 40717245 Downstream 74bp
chrX 48417411 48417411 1 + A G UCEC 48417408 + 48417388 48417428 41 CTTTACACAGTCCATCCTCACTCAGGTGTTTTCAGGGACCC CTTTACACAGTCCATCCTCACTCGGGTGTTTTCAGGGACCC < 41bp 0.569456445974211 0.78535820261257 0.059878945 0.17929465 prediction 0.431803513276718 Functional Gain - TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48417408 chrX:48417411 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_121678 0 0 0 0 1 TBC1D25 chrX:48417412 5'GT 48417412 Upstream 2bp
chr22 45944543 45944543 1 + T C STAD 45944540 + 45944520 45944560 41 GGGGCCACATCTGCTCCTACCGCTGCATCAACATCCCTGGA GGGGCCACATCTGCTCCTACCGCCGCATCAACATCCCTGGA < 41bp 0.515140144205291 0.731040957796696 0.064619154 0.2065286 prediction 0.431801627182811 Functional Gain - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45944540 chr22:45944543 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_121679 0 0 1 0 2 FBLN1 chr22:45944493 3'AG 45944493 Downstream 51bp
chr22 45944543 45944543 1 + T C STAD 45944540 + 45944520 45944560 41 GGGGCCACATCTGCTCCTACCGCTGCATCAACATCCCTGGA GGGGCCACATCTGCTCCTACCGCCGCATCAACATCCCTGGA < 41bp 0.515140144205291 0.731040957796696 0.064619154 0.2065286 prediction 0.431801627182811 Functional Gain - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45944540 chr22:45944543 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_121679 0 0 1 0 2 FBLN1 chr22:45944624 5'GT 45944624 Upstream 82bp
chr3 154884701 154884701 1 + C A LUAD 154884697 + 154884677 154884717 41 TTCTCTCCTTGTAGTCTTCCCAGCCGGCATTCTGCAGCCCC TTCTCTCCTTGTAGTCTTCCCAGCAGGCATTCTGCAGCCCC < 41bp 0.309300753596765 0.715900561946141 0.27381808 0.27423608 prediction 0.431801123892282 Functional Gain - MME ENSG00000196549 CDS Human protein_coding chr3:154884697 chr3:154884701 synonymous SNV . 0 25 hm5C_associated_SNPs_121680 0 0 0 0 1 MME chr3:154884691 3'AG 154884691 Downstream 11bp
chr22 42180400 42180400 1 + A G rs12484839 42180397 + 42180377 42180417 41 TATTGAAGGCTCTCAGCTTTCCAAAGAAAAAGGCTGCACTA TATTGAAGGCTCTCAGCTTTCCAGAGAAAAAGGCTGCACTA < 41bp 0.534793893738919 0.750693828216228 0.4364824 0.90334034 prediction 0.431799868954617 Functional Gain - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42180397 chr22:42180400 nonsynonymous SNV 0.962 2 24 hm5C_associated_SNPs_121682 0 0 0 1 2 MEI1 chr22:42180343 3'AG 42180343 Downstream 58bp
chr22 42180400 42180400 1 + A G rs12484839 42180397 + 42180377 42180417 41 TATTGAAGGCTCTCAGCTTTCCAAAGAAAAAGGCTGCACTA TATTGAAGGCTCTCAGCTTTCCAGAGAAAAAGGCTGCACTA < 41bp 0.534793893738919 0.750693828216228 0.4364824 0.90334034 prediction 0.431799868954617 Functional Gain - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42180397 chr22:42180400 nonsynonymous SNV 0.962 2 24 hm5C_associated_SNPs_121682 0 0 0 1 2 MEI1 chr22:42180424 5'GT 42180424 Upstream 25bp
chr10 88780144 88780144 1 + C A rs527824278 88780143 + 88780123 88780163 41 CCACCGCACCGAGAAGGCCACCGAGGGAGCCAGTGAGGACC CCACCGCACCGAGAAGGCCACAGAGGGAGCCAGTGAGGACC < 41bp 0.444154625544873 0.715899908464295 0.4258875 0.8393011 prediction 0.43179981692859 Functional Gain - FAM25A ENSG00000188100 CDS Human protein_coding chr10:88780143 chr10:88780144 synonymous SNV . 0 22 hm5C_associated_SNPs_121683 0 0 0 0 1 FAM25A chr10:88780154 5'GT 88780154 Upstream 11bp
chr2 86433246 86433246 1 + A G UCEC 86433243 + 86433223 86433263 41 TTACAGGAATCCTACGGCCCCTGAATATTTTGGCATCTTCA TTACAGGAATCCTACGGCCCCTGGATATTTTGGCATCTTCA < 41bp 0.561518669589139 0.777414303480413 0.02123639 0.06683463 prediction 0.431791267782548 Functional Gain - MRPL35 ENSG00000132313 CDS Human protein_coding chr2:86433243 chr2:86433246 nonsynonymous SNV 0.973 0 24 hm5C_associated_SNPs_121685 0 0 1 0 1 MRPL35 chr2:86433229 3'AG 86433229 Downstream 18bp
chr7 140402710 140402710 1 + C T HNSC 140402709 + 140402689 140402729 41 AGCCCCGGTATAGACAGTTCCCCCAGCTGACCAGATCCCAG AGCCCCGGTATAGACAGTTCCTCCAGCTGACCAGATCCCAG < 41bp 0.622551192488559 0.838441508369046 0.20246318 0.9322957 prediction 0.431780631760976 Functional Gain - NDUFB2 ENSG00000090266 CDS Human protein_coding chr7:140402709 chr7:140402710 nonsynonymous SNV 0.774 4 22 hm5C_associated_SNPs_121690 0 0 1 0 1 NDUFB2 chr7:140402666 3'AG 140402666 Downstream 45bp
chr12 51072495 51072495 1 + A G ACC 51072492 + 51072472 51072512 41 AGACCCCAACCAGCCCAAGCCGGAGGGACGGCAGATGACCC AGACCCCAACCAGCCCAAGCCGGGGGGACGGCAGATGACCC < 41bp 0.478171133558326 0.715881209648696 0.76308364 0.8976919 prediction 0.431762419297392 Functional Gain - DIP2B ENSG00000066084 CDS Human protein_coding chr12:51072492 chr12:51072495 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_121691 0 0 1 0 1 DIP2B chr12:51072462 3'AG 51072462 Downstream 34bp
chr3 155628929 155628929 1 + A G UCEC 155628926 + 155628906 155628946 41 TTACTCAGTGGTGGAGTAGACTCAACAGTTTGTACAGCTTT TTACTCAGTGGTGGAGTAGACTCGACAGTTTGTACAGCTTT < 41bp 0.547850034938576 0.763725526203825 0.21341419 0.48384833 prediction 0.431750982530499 Functional Gain - GMPS ENSG00000163655 CDS Human protein_coding chr3:155628926 chr3:155628929 synonymous SNV . 0 24 hm5C_associated_SNPs_121694 0 0 1 0 1 GMPS chr3:155628903 3'AG 155628903 Downstream 27bp
chrX 48462733 48462733 1 + A G LUSC 48462730 + 48462710 48462750 41 AGCAGAGCTCACATCCTGTGCGCAGCATCTTCTGTCCCCTC AGCAGAGCTCACATCCTGTGCGCGGCATCTTCTGTCCCCTC < 41bp 0.580568563726401 0.796428659506338 0.035927027 0.22030258 prediction 0.431720191559874 Functional Gain - WDR13 ENSG00000101940 CDS Human protein_coding chrX:48462730 chrX:48462733 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_121701 0 0 0 0 1 WDR13 chrX:48462778 5'GT 48462778 Upstream 46bp
chr8 145608358 145608358 1 + C T LUSC 145608357 + 145608337 145608377 41 GCGCCCCTGCTCCTCGGAGCCCGCTATGTCATGGCAGAGGC GCGCCCCTGCTCCTCGGAGCCTGCTATGTCATGGCAGAGGC < 41bp 0.468020961247502 0.71585889011222 0.0821971 0.13755947 prediction 0.431717780224439 Functional Gain - ADCK5 ENSG00000173137 CDS Human protein_coding chr8:145608357 chr8:145608358 nonsynonymous SNV 0.006 1 22 hm5C_associated_SNPs_121702 0 0 0 0 2 ADCK5 chr8:145608282 3'AG 145608282 Downstream 77bp
chr8 145608358 145608358 1 + C T LUSC 145608357 + 145608337 145608377 41 GCGCCCCTGCTCCTCGGAGCCCGCTATGTCATGGCAGAGGC GCGCCCCTGCTCCTCGGAGCCTGCTATGTCATGGCAGAGGC < 41bp 0.468020961247502 0.71585889011222 0.0821971 0.13755947 prediction 0.431717780224439 Functional Gain - ADCK5 ENSG00000173137 CDS Human protein_coding chr8:145608357 chr8:145608358 nonsynonymous SNV 0.006 1 22 hm5C_associated_SNPs_121702 0 0 0 0 2 ADCK5 chr8:145608431 5'GT 145608431 Upstream 74bp
chr1 217955536 217955536 1 + C T UCEC 217955535 + 217955515 217955555 41 GGGGCCCTTCCGAGATATCACCGAAGTATTAGAACAACGCT GGGGCCCTTCCGAGATATCACTGAAGTATTAGAACAACGCT < 41bp 0.574483340858164 0.790341329280765 0.7839066 0.11372337 prediction 0.431715976845203 Functional Gain - SPATA17 ENSG00000162814 CDS Human protein_coding chr1:217955535 chr1:217955536 synonymous SNV . 0 22 hm5C_associated_SNPs_121703 0 0 1 0 1 SPATA17 chr1:217955516 3'AG 217955516 Downstream 21bp
chr4 166231877 166231877 1 + T C STAD 166231874 + 166231854 166231894 41 GTGTTAAATGGATTATTATACGCTGTGGGAGGCTTTGATGG GTGTTAAATGGATTATTATACGCCGTGGGAGGCTTTGATGG < 41bp 0.532770074367867 0.748627123509735 0.020292372 0.068751246 prediction 0.431714098283735 Functional Gain - KLHL2 ENSG00000109466 CDS Human protein_coding chr4:166231874 chr4:166231877 synonymous SNV . 0 24 hm5C_associated_SNPs_121704 0 0 1 0 1 KLHL2 chr4:166231902 5'GT 166231902 Upstream 26bp
chr19 58563904 58563904 1 + C A LUAD 58563903 + 58563883 58563923 41 TGGCAGCAGCCCCAGCACTCCCCGAGGAAAGTGAGTGGCTG TGGCAGCAGCCCCAGCACTCCACGAGGAAAGTGAGTGGCTG < 41bp 0.626250160946844 0.842102722272286 0.71499765 0.8495144 prediction 0.431705122650882 Functional Gain - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58563903 chr19:58563904 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_121705 0 0 0 0 2 ZSCAN1 chr19:58563858 3'AG 58563858 Downstream 47bp
chr19 58563904 58563904 1 + C A LUAD 58563903 + 58563883 58563923 41 TGGCAGCAGCCCCAGCACTCCCCGAGGAAAGTGAGTGGCTG TGGCAGCAGCCCCAGCACTCCACGAGGAAAGTGAGTGGCTG < 41bp 0.626250160946844 0.842102722272286 0.71499765 0.8495144 prediction 0.431705122650882 Functional Gain - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58563903 chr19:58563904 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_121705 0 0 0 0 2 ZSCAN1 chr19:58563996 5'GT 58563996 Upstream 93bp
chr1 196749101 196749101 1 + T A GBM 196749097 + 196749077 196749117 41 CTCCTACTCCCAGATGCATCCGTGTCAGTAAGTACACCGCT CTCCTACTCCCAGATGCATCCGTGACAGTAAGTACACCGCT < 41bp 0.408749684955267 0.715842453992998 0.21902725 0.17203116 prediction 0.431684907985995 Functional Gain - CFHR3 ENSG00000116785 CDS Human protein_coding chr1:196749097 chr1:196749101 nonsynonymous SNV 0.000 3 25 hm5C_associated_SNPs_121708 0 0 0 0 1 CFHR3 chr1:196749103 5'GT 196749103 Upstream 3bp
chr2 73467659 73467659 1 + C A LUAD 73467658 + 73467638 73467678 41 TTTGGTAGACATTGCCAAATCCCAAGATGCTGAGGTAGGAA TTTGGTAGACATTGCCAAATCACAAGATGCTGAGGTAGGAA < 41bp 0.593929352737951 0.809759538046437 0.05228284 0.114328355 prediction 0.43166037061697 Functional Gain - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73467658 chr2:73467659 synonymous SNV . 0 22 hm5C_associated_SNPs_121712 0 0 1 0 2 CCT7 chr2:73467565 3'AG 73467565 Downstream 95bp
chr2 73467659 73467659 1 + C A LUAD 73467658 + 73467638 73467678 41 TTTGGTAGACATTGCCAAATCCCAAGATGCTGAGGTAGGAA TTTGGTAGACATTGCCAAATCACAAGATGCTGAGGTAGGAA < 41bp 0.593929352737951 0.809759538046437 0.05228284 0.114328355 prediction 0.43166037061697 Functional Gain - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73467658 chr2:73467659 synonymous SNV . 0 22 hm5C_associated_SNPs_121712 0 0 1 0 2 CCT7 chr2:73467671 5'GT 73467671 Upstream 13bp
chr14 72200430 72200430 1 + C T UCEC 72200429 + 72200409 72200449 41 CTCACTGACATCCAGGAGACCCGCAGGCAGCCTATGCCCGA CTCACTGACATCCAGGAGACCTGCAGGCAGCCTATGCCCGA < 41bp 0.448047696244294 0.715828742879346 0.18972743 0.31589907 prediction 0.431657485758693 Functional Gain - SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72200429 chr14:72200430 nonsynonymous SNV 0.853 3 22 hm5C_associated_SNPs_121713 0 0 0 0 1 SIPA1L1 chr14:72200383 3'AG 72200383 Downstream 48bp
chr3 99979897 99979897 1 + C A LUSC 99979893 + 99979873 99979913 41 GAGAAGATGTGCCGCCGCTGCCAACGTCGAGCGGCGACGGC GAGAAGATGTGCCGCCGCTGCCAAAGTCGAGCGGCGACGGC < 41bp 0.335902886018809 0.715817623029467 0.22464764 0.62186277 prediction 0.431635246058934 Functional Gain - TBC1D23 ENSG00000036054 CDS Human protein_coding chr3:99979893 chr3:99979897 nonsynonymous SNV 0.927 1 25 hm5C_associated_SNPs_121716 0 0 1 0 1 TBC1D23 chr3:99979915 5'GT 99979915 Upstream 19bp
chr11 64088536 64088536 1 + A G LIHC 64088533 + 64088513 64088553 41 CCATCTTTGGGAATCGACGTCTCAAGAGGTAAAAGTGGAGA CCATCTTTGGGAATCGACGTCTCGAGAGGTAAAAGTGGAGA < 41bp 0.559790889079446 0.77560328047538 0.28093684 0.5884037 prediction 0.431624782791869 Functional Gain - PRDX5 ENSG00000126432 CDS Human protein_coding chr11:64088533 chr11:64088536 nonsynonymous SNV 0.977 3 24 hm5C_associated_SNPs_121721 0 0 1 0 2 PRDX5 chr11:64088479 3'AG 64088479 Downstream 58bp
chr11 64088536 64088536 1 + A G LIHC 64088533 + 64088513 64088553 41 CCATCTTTGGGAATCGACGTCTCAAGAGGTAAAAGTGGAGA CCATCTTTGGGAATCGACGTCTCGAGAGGTAAAAGTGGAGA < 41bp 0.559790889079446 0.77560328047538 0.28093684 0.5884037 prediction 0.431624782791869 Functional Gain - PRDX5 ENSG00000126432 CDS Human protein_coding chr11:64088533 chr11:64088536 nonsynonymous SNV 0.977 3 24 hm5C_associated_SNPs_121721 0 0 1 0 2 PRDX5 chr11:64088540 5'GT 64088540 Upstream 5bp
chr12 4721739 4721739 1 + C A BRCA 4721735 + 4721715 4721755 41 ACCTTCTCTTCGCATGACCCCGGACCAGGCCCTCAAGCATG ACCTTCTCTTCGCATGACCCCGGAACAGGCCCTCAAGCATG < 41bp 0.299058714623792 0.715809960888052 0.20624548 0.3603148 prediction 0.431619921776104 Functional Gain - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4721735 chr12:4721739 nonsynonymous SNV 0.985 0 25 hm5C_associated_SNPs_121723 0 0 1 0 1 DYRK4 chr12:4721709 3'AG 4721709 Downstream 31bp
chr16 31138587 31138587 1 + C T LIHC 31138586 + 31138566 31138606 41 CTGGTATTTCTCACCATTCCCCGAAGACTATGGGAAACAGC CTGGTATTTCTCACCATTCCCTGAAGACTATGGGAAACAGC < 41bp 0.449300126940839 0.715808532179618 0.07218152 0.02793771 prediction 0.431617064359235 Functional Gain - KAT8 ENSG00000103510 CDS Human protein_coding chr16:31138586 chr16:31138587 synonymous SNV . 0 22 hm5C_associated_SNPs_121725 0 0 1 0 1 KAT8 chr16:31138674 5'GT 31138674 Upstream 88bp
chr1 65886398 65886398 1 + T A rs3790435 65886394 + 65886374 65886414 41 AGCCGGAAGCAGCCGCGGCCCCAGTTCGGGAGACATGGCGG AGCCGGAAGCAGCCGCGGCCCCAGATCGGGAGACATGGCGG < 41bp 0.571377157209092 0.787184184393295 0.85842955 0.80435705 prediction 0.431614054368407 Functional Gain - LEPR;LEPROT ENSG00000116678;ENSG00000213625 UTR5 Human protein_coding chr1:65886394 chr1:65886398 . . 0 25 hm5C_associated_SNPs_121726 0 0 1 0 1 LEPROT chr1:65886423 5'GT 65886423 Upstream 26bp
chr2 192250671 192250671 1 + A G LUSC 192250668 + 192250648 192250688 41 CCTCAGACCTGGCACAGTCACTGATGAGACCTTCTTAGAAA CCTCAGACCTGGCACAGTCACTGGTGAGACCTTCTTAGAAA < 41bp 0.554594113825415 0.770399992636934 0.15996978 0.427649 prediction 0.431611757623039 Functional Gain - MYO1B ENSG00000128641 CDS Human protein_coding chr2:192250668 chr2:192250671 nonsynonymous SNV 0.948 5 24 hm5C_associated_SNPs_121727 0 0 1 0 1 MYO1B chr2:192250610 3'AG 192250610 Downstream 62bp
chr6 35754873 35754873 1 + C A UCEC 35754872 + 35754852 35754892 41 GCACTGCGCGGAGAAGGGGTCCGAGGGCAGTCTGTGTCAAA GCACTGCGCGGAGAAGGGGTCAGAGGGCAGTCTGTGTCAAA < 41bp 0.62821368559019 0.844016970647955 0.77350855 0.9094425 prediction 0.43160657011553 Functional Gain - CLPSL1 ENSG00000204140 CDS Human protein_coding chr6:35754872 chr6:35754873 synonymous SNV . 0 22 hm5C_associated_SNPs_121730 0 0 0 0 2 CLPSL1 chr6:35754775 3'AG 35754775 Downstream 99bp
chr6 35754873 35754873 1 + C A UCEC 35754872 + 35754852 35754892 41 GCACTGCGCGGAGAAGGGGTCCGAGGGCAGTCTGTGTCAAA GCACTGCGCGGAGAAGGGGTCAGAGGGCAGTCTGTGTCAAA < 41bp 0.62821368559019 0.844016970647955 0.77350855 0.9094425 prediction 0.43160657011553 Functional Gain - CLPSL1 ENSG00000204140 CDS Human protein_coding chr6:35754872 chr6:35754873 synonymous SNV . 0 22 hm5C_associated_SNPs_121730 0 0 0 0 2 CLPSL1 chr6:35754897 5'GT 35754897 Upstream 25bp
chr3 155632314 155632314 1 + A G rs61750369 155632311 + 155632291 155632331 41 AGCAAAACGTTAAATATGACCACAAGTCCTGAAGAGAAAAG AGCAAAACGTTAAATATGACCACGAGTCCTGAAGAGAAAAG < 41bp 0.530258679901712 0.746052722745922 0.12024698 0.07978952 prediction 0.431588085688421 Functional Gain - GMPS ENSG00000163655 CDS Human protein_coding chr3:155632311 chr3:155632314 synonymous SNV . 0 24 hm5C_associated_SNPs_121733 0 0 1 0 1 GMPS chr3:155632359 5'GT 155632359 Upstream 46bp
chr12 38710823 38710823 1 + C A PRAD 38710819 + 38710799 38710839 41 ACATGGACGAGATCTTCCACCTGCCTCAGGCGCAGCGCTAC ACATGGACGAGATCTTCCACCTGCATCAGGCGCAGCGCTAC < 41bp 0.714183297853595 0.929971541836084 0.09114775 0.072604865 prediction 0.431576487964978 Functional Gain - ALG10B ENSG00000175548 CDS Human protein_coding chr12:38710819 chr12:38710823 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_121736 0 0 0 0 1 ALG10B chr12:38710866 5'GT 38710866 Upstream 44bp
chr1 110231875 110231875 1 + T G COAD 110231873 + 110231853 110231893 41 AGACAGAAGAGGAGAAGATTCGTGTGGACATTTTGGAGAAC AGACAGAAGAGGAGAAGATTCGGGTGGACATTTTGGAGAAC < 41bp 0.693685973155012 0.909470888569387 0.26880893 0.873806 prediction 0.431569830828749 Functional Gain - GSTM1 ENSG00000134184 CDS Human protein_coding chr1:110231873 chr1:110231875 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_121738 0 0 0 0 2 GSTM1 chr1:110231847 3'AG 110231847 Downstream 29bp
chr1 110231875 110231875 1 + T G COAD 110231873 + 110231853 110231893 41 AGACAGAAGAGGAGAAGATTCGTGTGGACATTTTGGAGAAC AGACAGAAGAGGAGAAGATTCGGGTGGACATTTTGGAGAAC < 41bp 0.693685973155012 0.909470888569387 0.26880893 0.873806 prediction 0.431569830828749 Functional Gain - GSTM1 ENSG00000134184 CDS Human protein_coding chr1:110231873 chr1:110231875 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_121738 0 0 0 0 2 GSTM1 chr1:110231947 5'GT 110231947 Upstream 73bp
chr14 20824111 20824111 1 + C T SKCM 20824110 + 20824090 20824130 41 TGAAAACAGAGCTACAAAGCCCAGAACACCCATTGGACCAA TGAAAACAGAGCTACAAAGCCTAGAACACCCATTGGACCAA < 41bp 0.626424945494085 0.842200940937394 0.13539785 0.09751335 prediction 0.431551990886617 Functional Gain - PARP2 ENSG00000129484 CDS Human protein_coding chr14:20824110 chr14:20824111 nonsynonymous SNV 0.994 0 22 hm5C_associated_SNPs_121741 0 0 1 0 2 PARP2 chr14:20824056 3'AG 20824056 Downstream 56bp
chr14 20824111 20824111 1 + C T SKCM 20824110 + 20824090 20824130 41 TGAAAACAGAGCTACAAAGCCCAGAACACCCATTGGACCAA TGAAAACAGAGCTACAAAGCCTAGAACACCCATTGGACCAA < 41bp 0.626424945494085 0.842200940937394 0.13539785 0.09751335 prediction 0.431551990886617 Functional Gain - PARP2 ENSG00000129484 CDS Human protein_coding chr14:20824110 chr14:20824111 nonsynonymous SNV 0.994 0 22 hm5C_associated_SNPs_121741 0 0 1 0 2 PARP2 chr14:20824190 5'GT 20824190 Upstream 80bp
chr2 71781014 71781014 1 + C A LUAD 71781010 + 71780990 71781030 41 TCATCCTACTGGGAGGACATCAGCCATAGAATCGAGACTCA TCATCCTACTGGGAGGACATCAGCAATAGAATCGAGACTCA < 41bp 0.344195537734682 0.715770032289234 0.36095637 0.42938787 prediction 0.431540064578467 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71781010 chr2:71781014 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_121742 0 0 0 0 1 DYSF chr2:71781061 5'GT 71781061 Upstream 48bp
chr4 110902085 110902085 1 + A G STAD 110902082 + 110902062 110902102 41 CGTGAAGGTTTTATGAAAGCCTCAGATGGGAAAACGTGTCT CGTGAAGGTTTTATGAAAGCCTCGGATGGGAAAACGTGTCT < 41bp 0.474189408470366 0.715758417175205 0.17449242 0.18639296 prediction 0.431516834350411 Functional Gain - EGF ENSG00000138798 CDS Human protein_coding chr4:110902082 chr4:110902085 synonymous SNV . 0 24 hm5C_associated_SNPs_121747 0 0 0 0 1 EGF chr4:110902131 5'GT 110902131 Upstream 47bp
chr8 95888452 95888452 1 + T C rs34558403 95888450 + 95888430 95888470 41 ACTGAATTCTGTCTTTCAGTCATGATGCTATGGACTCCTAC ACTGAATTCTGTCTTTCAGTCACGATGCTATGGACTCCTAC < 41bp 0.435051569656167 0.71575780198955 0.12276447 0.069645315 prediction 0.431515603979101 Functional Gain - INTS8 ENSG00000164941 CDS Human protein_coding chr8:95888450 chr8:95888452 synonymous SNV . 0 23 hm5C_associated_SNPs_121748 0 0 1 0 2 INTS8 chr8:95888449 3'AG 95888449 Downstream 4bp
chr8 95888452 95888452 1 + T C rs34558403 95888450 + 95888430 95888470 41 ACTGAATTCTGTCTTTCAGTCATGATGCTATGGACTCCTAC ACTGAATTCTGTCTTTCAGTCACGATGCTATGGACTCCTAC < 41bp 0.435051569656167 0.71575780198955 0.12276447 0.069645315 prediction 0.431515603979101 Functional Gain - INTS8 ENSG00000164941 CDS Human protein_coding chr8:95888450 chr8:95888452 synonymous SNV . 0 23 hm5C_associated_SNPs_121748 0 0 1 0 2 INTS8 chr8:95888513 5'GT 95888513 Upstream 62bp
chr3 184009925 184009925 1 + C T HNSC 184009924 + 184009904 184009944 41 CCCCACAGCCCTGCCCGCTTCCGCGTGCTGGGCACTCTCTC CCCCACAGCCCTGCCCGCTTCTGCGTGCTGGGCACTCTCTC < 41bp 0.586697075566346 0.802443760598883 0.24129176 0.100366384 prediction 0.431493370065073 Functional Gain - ECE2 ENSG00000145194 CDS Human protein_coding chr3:184009924 chr3:184009925 nonsynonymous SNV 0.996 5 22 hm5C_associated_SNPs_121753 0 0 0 0 1 ECE2 chr3:184009850 3'AG 184009850 Downstream 76bp
chr19 18685888 18685888 1 + T C LIHC 18685886 + 18685866 18685906 41 GGTGCTATGCTCGCCTTCACCCTCGTGCTGTCAACTGCCGC GGTGCTATGCTCGCCTTCACCCCCGTGCTGTCAACTGCCGC < 41bp 0.454792520657056 0.715744532384549 0.1879023 0.14625373 prediction 0.431489064769097 Functional Gain - UBA52 ENSG00000221983 CDS Human protein_coding chr19:18685886 chr19:18685888 synonymous SNV . 0 23 hm5C_associated_SNPs_121754 0 0 1 0 1 UBA52 chr19:18685867 3'AG 18685867 Downstream 22bp
chr4 166964483 166964483 1 + C G LUAD 166964482 + 166964462 166964502 41 AGATTCAGTCTCCCAATTATCCTGATGACTATCGCCCGATG AGATTCAGTCTCCCAATTATCGTGATGACTATCGCCCGATG < 41bp 0.400016006238946 0.715723427484609 0.30958498 0.8456183 prediction 0.431446854969217 Functional Gain - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166964482 chr4:166964483 nonsynonymous SNV 0.043 3 22 hm5C_associated_SNPs_121764 0 0 0 0 2 TLL1 chr4:166964426 3'AG 166964426 Downstream 58bp
chr4 166964483 166964483 1 + C G LUAD 166964482 + 166964462 166964502 41 AGATTCAGTCTCCCAATTATCCTGATGACTATCGCCCGATG AGATTCAGTCTCCCAATTATCGTGATGACTATCGCCCGATG < 41bp 0.400016006238946 0.715723427484609 0.30958498 0.8456183 prediction 0.431446854969217 Functional Gain - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166964482 chr4:166964483 nonsynonymous SNV 0.043 3 22 hm5C_associated_SNPs_121764 0 0 0 0 2 TLL1 chr4:166964571 5'GT 166964571 Upstream 89bp
chr7 139026191 139026191 1 + C G LUSC 139026190 + 139026170 139026210 41 CTTCTGCGGGAGTTGCGCTACCTGAGCGCGGCCACCGGCCG CTTCTGCGGGAGTTGCGCTACGTGAGCGCGGCCACCGGCCG < 41bp 0.672937104023247 0.888659040157647 0.27422628 0.37003314 prediction 0.4314438722688 Functional Gain - C7orf55-LUC7L2;FMC1 ENSG00000164898;ENSG00000269955 CDS Human other chr7:139026190 chr7:139026191 nonsynonymous SNV 0.957 0 22 hm5C_associated_SNPs_121765 0 0 1 0 1 C7orf55-LUC7L2;FMC1 chr7:139026268 5'GT 139026268 Upstream 78bp
chr5 134229293 134229293 1 + C T GBM 134229292 + 134229272 134229312 41 CCTCACTTTAACTCTCTGCCCCGGGCATTTCCAGCTCTTCA CCTCACTTTAACTCTCTGCCCTGGGCATTTCCAGCTCTTCA < 41bp 0.579372027515381 0.79509336914434 0.02679646 0.0028237104 prediction 0.431442683257917 Functional Gain - TXNDC15 ENSG00000113621 CDS Human protein_coding chr5:134229292 chr5:134229293 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_121766 0 0 1 1 1 TXNDC15 chr5:134229345 5'GT 134229345 Upstream 53bp
chr5 135188468 135188468 1 + A G rs199534323 135188465 + 135188445 135188485 41 GGCTGGGAGGGCCCGTGGACCTCATCAAGATCCGGTTGCAG GGCTGGGAGGGCCCGTGGACCTCGTCAAGATCCGGTTGCAG < 41bp 0.464287026030292 0.71572118279376 0.23689753 0.32120723 prediction 0.431442365587521 Functional Gain - SLC25A48 ENSG00000145832 CDS Human protein_coding chr5:135188465 chr5:135188468 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_121767 0 0 0 0 1 SLC25A48 chr5:135188510 5'GT 135188510 Upstream 43bp
chr15 40564463 40564463 1 + C T SKCM 40564462 + 40564442 40564482 41 ACCGCCGCAGAAAGACAACCCCCCAAGCCTGGTGGCCAAGG ACCGCCGCAGAAAGACAACCCTCCAAGCCTGGTGGCCAAGG < 41bp 0.430937146458202 0.715715773959886 0.18287638 0.96128654 prediction 0.431431547919771 Functional Gain - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40564462 chr15:40564463 synonymous SNV . 0 22 hm5C_associated_SNPs_121769 0 0 0 0 1 BUB1B-PAK6;PAK6 chr15:40564425 3'AG 40564425 Downstream 39bp
chr13 114202701 114202701 1 + C T BLCA 114202700 + 114202680 114202720 41 GATCGTCTCTGCGGGGCTTGCCCAGGTCAGCGAGTTTTCCT GATCGTCTCTGCGGGGCTTGCTCAGGTCAGCGAGTTTTCCT < 41bp 0.61160145155838 0.827312006383701 0.11191258 0.17520154 prediction 0.431421109650642 Functional Gain - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114202700 chr13:114202701 synonymous SNV . 0 22 hm5C_associated_SNPs_121773 0 0 1 0 2 TMCO3 chr13:114202618 3'AG 114202618 Downstream 84bp
chr13 114202701 114202701 1 + C T BLCA 114202700 + 114202680 114202720 41 GATCGTCTCTGCGGGGCTTGCCCAGGTCAGCGAGTTTTCCT GATCGTCTCTGCGGGGCTTGCTCAGGTCAGCGAGTTTTCCT < 41bp 0.61160145155838 0.827312006383701 0.11191258 0.17520154 prediction 0.431421109650642 Functional Gain - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114202700 chr13:114202701 synonymous SNV . 0 22 hm5C_associated_SNPs_121773 0 0 1 0 2 TMCO3 chr13:114202767 5'GT 114202767 Upstream 67bp
chr10 26569998 26569998 1 + T A LUSC 26569994 + 26569974 26570014 41 GGGAGTCCCTTTGCAGTGCTCTGCTCTCCTGGTTAGAGAAG GGGAGTCCCTTTGCAGTGCTCTGCACTCCTGGTTAGAGAAG < 41bp 0.366577843933857 0.715698860365818 0.22693723 0.45894563 prediction 0.431397720731636 Functional Gain - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26569994 chr10:26569998 synonymous SNV . 0 25 hm5C_associated_SNPs_121780 0 0 0 0 2 GAD2 chr10:26569938 3'AG 26569938 Downstream 61bp
chr10 26569998 26569998 1 + T A LUSC 26569994 + 26569974 26570014 41 GGGAGTCCCTTTGCAGTGCTCTGCTCTCCTGGTTAGAGAAG GGGAGTCCCTTTGCAGTGCTCTGCACTCCTGGTTAGAGAAG < 41bp 0.366577843933857 0.715698860365818 0.22693723 0.45894563 prediction 0.431397720731636 Functional Gain - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26569994 chr10:26569998 synonymous SNV . 0 25 hm5C_associated_SNPs_121780 0 0 0 0 2 GAD2 chr10:26570016 5'GT 26570016 Upstream 19bp
chr10 74684045 74684045 1 + C T ESCA 74684044 + 74684024 74684064 41 CAGGTCTACCCAAGCAGACCCCGGGGAGCAGCGGGGACTTC CAGGTCTACCCAAGCAGACCCTGGGGAGCAGCGGGGACTTC < 41bp 0.478154870343573 0.715693599205134 0.7932325 0.46659285 prediction 0.431387198410268 Functional Gain - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74684044 chr10:74684045 nonsynonymous SNV 0.953 3 22 hm5C_associated_SNPs_121783 0 0 0 0 1 OIT3 chr10:74683987 3'AG 74683987 Downstream 59bp
chr16 28506015 28506015 1 + C T GBM 28506014 + 28505994 28506034 41 ACAGACAGGATGGACTTCCTCCGGCTATACCTCCCTGGGCT ACAGACAGGATGGACTTCCTCTGGCTATACCTCCCTGGGCT < 41bp 0.494970723407145 0.715690692640141 0.4875834 0.24687937 prediction 0.431381385280282 Functional Gain - APOBR ENSG00000184730 CDS Human protein_coding chr16:28506014 chr16:28506015 nonsynonymous SNV 0.989 3 22 hm5C_associated_SNPs_121785 0 0 0 0 1 APOBR chr16:28506059 5'GT 28506059 Upstream 45bp
chr20 42088845 42088845 1 + C A THCA 42088841 + 42088821 42088861 41 GGCTTATTGAAGATAAGCCACGCACAAGCCATAGGCGATCT GGCTTATTGAAGATAAGCCACGCAAAAGCCATAGGCGATCT < 41bp 0.285940609199948 0.71568811933328 0.020477116 0.0191091 prediction 0.431376238666559 Functional Gain - SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42088841 chr20:42088845 nonsynonymous SNV 0.991 0 25 hm5C_associated_SNPs_121786 0 0 1 0 1 SRSF6 chr20:42088881 5'GT 42088881 Upstream 37bp
chr21 37788602 37788602 1 + C T LUSC 37788601 + 37788581 37788621 41 GGAGACGCTCAGGGCAGTCCCCCAGAGCTAAAGCGGCCCAG GGAGACGCTCAGGGCAGTCCCTCAGAGCTAAAGCGGCCCAG < 41bp 0.568985327678163 0.784669567448256 0.1774959 0.21500123 prediction 0.431368479540187 Functional Gain - CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37788601 chr21:37788602 nonsynonymous SNV 0.067 2 22 hm5C_associated_SNPs_121788 0 0 0 0 1 CHAF1B chr21:37788573 3'AG 37788573 Downstream 30bp
chr15 82563991 82563991 1 + C T rs16973457 82563990 + 82563970 82564010 41 TTAAACAGCCTCGCCATGTGCCAGAAGAATATAAACCAAAA TTAAACAGCCTCGCCATGTGCTAGAAGAATATAAACCAAAA < 41bp 0.466757407838422 0.715681202756961 0.21292466 0.16541219 prediction 0.431362405513923 Functional Gain - SAXO2 ENSG00000188659 CDS Human protein_coding chr15:82563990 chr15:82563991 nonsynonymous SNV 0.782 0 22 hm5C_associated_SNPs_121791 0 0 0 0 1 SAXO2 chr15:82563944 3'AG 82563944 Downstream 48bp
chr10 115343915 115343915 1 + A G UCEC 115343912 + 115343892 115343932 41 TCTCTCTCCACCTAGCATTGCTCAAGTTAAAGCCAGTGGAT TCTCTCTCCACCTAGCATTGCTCGAGTTAAAGCCAGTGGAT < 41bp 0.473281717446701 0.715680734416341 0.14309716 0.35086733 prediction 0.431361468832682 Functional Gain - HABP2 ENSG00000148702 CDS Human protein_coding chr10:115343912 chr10:115343915 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_121792 0 0 0 1 1 HABP2 chr10:115343907 3'AG 115343907 Downstream 9bp
chr21 45736184 45736184 1 + C G SKCM 45736183 + 45736163 45736203 41 ATCGCTGAGGGTGCCATTGACCGCAACGGGAAGCCCATCTC ATCGCTGAGGGTGCCATTGACGGCAACGGGAAGCCCATCTC < 41bp 0.67328137424019 0.888956714387135 0.17982098 0.86738145 prediction 0.43135068029389 Functional Gain - PFKL ENSG00000141959 CDS Human protein_coding chr21:45736183 chr21:45736184 nonsynonymous SNV 0.096 1 22 hm5C_associated_SNPs_121797 0 0 1 0 2 PFKL chr21:45736127 3'AG 45736127 Downstream 58bp
chr21 45736184 45736184 1 + C G SKCM 45736183 + 45736163 45736203 41 ATCGCTGAGGGTGCCATTGACCGCAACGGGAAGCCCATCTC ATCGCTGAGGGTGCCATTGACGGCAACGGGAAGCCCATCTC < 41bp 0.67328137424019 0.888956714387135 0.17982098 0.86738145 prediction 0.43135068029389 Functional Gain - PFKL ENSG00000141959 CDS Human protein_coding chr21:45736183 chr21:45736184 nonsynonymous SNV 0.096 1 22 hm5C_associated_SNPs_121797 0 0 1 0 2 PFKL chr21:45736222 5'GT 45736222 Upstream 39bp
chrX 69650943 69650943 1 + C A UCEC 69650942 + 69650922 69650962 41 GCCACTGCCCCCCTCAGCCTCCCGGTTATAAGCATGAGCTA GCCACTGCCCCCCTCAGCCTCACGGTTATAAGCATGAGCTA < 41bp 0.454348588064828 0.715672122087027 0.33416533 0.2886876 prediction 0.431344244174054 Functional Gain - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69650942 chrX:69650943 nonsynonymous SNV 0.006 1 22 hm5C_associated_SNPs_121799 0 0 0 0 1 GDPD2 chrX:69650976 5'GT 69650976 Upstream 34bp
chr15 56704548 56704548 1 + A G UCEC 56704545 + 56704525 56704565 41 AAAAACAGGCTGCAAGTAGTCAAAGTGCCACAGAGGTTCGC AAAAACAGGCTGCAAGTAGTCAAGGTGCCACAGAGGTTCGC < 41bp 0.498346542035997 0.715671016827354 0.11626059 0.28871858 prediction 0.431342033654707 Functional Gain - TEX9 ENSG00000151575 CDS Human protein_coding chr15:56704545 chr15:56704548 nonsynonymous SNV 0.990 2 24 hm5C_associated_SNPs_121800 0 0 0 0 2 TEX9 chr15:56704500 3'AG 56704500 Downstream 49bp
chr15 56704548 56704548 1 + A G UCEC 56704545 + 56704525 56704565 41 AAAAACAGGCTGCAAGTAGTCAAAGTGCCACAGAGGTTCGC AAAAACAGGCTGCAAGTAGTCAAGGTGCCACAGAGGTTCGC < 41bp 0.498346542035997 0.715671016827354 0.11626059 0.28871858 prediction 0.431342033654707 Functional Gain - TEX9 ENSG00000151575 CDS Human protein_coding chr15:56704545 chr15:56704548 nonsynonymous SNV 0.990 2 24 hm5C_associated_SNPs_121800 0 0 0 0 2 TEX9 chr15:56704634 5'GT 56704634 Upstream 87bp
chr10 94834612 94834612 1 + T C LUSC 94834610 + 94834590 94834630 41 ACCGAGGAAGTGGGCAGCAGCCTGGAGCAGTGGCTGAGCTG ACCGAGGAAGTGGGCAGCAGCCCGGAGCAGTGGCTGAGCTG < 41bp 0.618824364348828 0.834490991602426 0.74595004 0.8540592 prediction 0.431333254507196 Functional Gain - CYP26A1 ENSG00000095596 CDS Human protein_coding chr10:94834610 chr10:94834612 nonsynonymous SNV 0.693 4 23 hm5C_associated_SNPs_121803 0 0 0 0 1 CYP26A1 chr10:94834536 3'AG 94834536 Downstream 77bp
chr3 121828116 121828116 1 + T C rs113046632 121828114 + 121828094 121828134 41 ATTTGTGGTCATTTGTAGAGCTTGAGGACCCTCAGCCTCCC ATTTGTGGTCATTTGTAGAGCTCGAGGACCCTCAGCCTCCC < 41bp 0.638951525167784 0.85461130803516 0.3076324 0.24663153 prediction 0.431319565734754 Functional Gain - CD86 ENSG00000114013 CDS Human protein_coding chr3:121828114 chr3:121828116 synonymous SNV . 0 23 hm5C_associated_SNPs_121805 0 0 0 0 1 CD86 chr3:121828112 3'AG 121828112 Downstream 5bp
chr6 150291187 150291187 1 + A G UCEC 150291184 + 150291164 150291204 41 TGGCCCCAGGCACAACCCAACCCAAGGCCATGGCCACCACC TGGCCCCAGGCACAACCCAACCCGAGGCCATGGCCACCACC < 41bp 0.468491141870611 0.715654467371979 0.064852 0.065966725 prediction 0.431308934743959 Functional Gain - ULBP1 ENSG00000111981 CDS Human protein_coding chr6:150291184 chr6:150291187 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_121811 0 0 0 0 2 ULBP1 chr6:150291152 3'AG 150291152 Downstream 36bp
chr6 150291187 150291187 1 + A G UCEC 150291184 + 150291164 150291204 41 TGGCCCCAGGCACAACCCAACCCAAGGCCATGGCCACCACC TGGCCCCAGGCACAACCCAACCCGAGGCCATGGCCACCACC < 41bp 0.468491141870611 0.715654467371979 0.064852 0.065966725 prediction 0.431308934743959 Functional Gain - ULBP1 ENSG00000111981 CDS Human protein_coding chr6:150291184 chr6:150291187 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_121811 0 0 0 0 2 ULBP1 chr6:150291283 5'GT 150291283 Upstream 97bp
chrX 140953260 140953260 1 + C T LUSC 140953259 + 140953239 140953279 41 GATATTTGACCTGAGTAGCCCCGGAAAAAGGCCACAGATAA GATATTTGACCTGAGTAGCCCTGGAAAAAGGCCACAGATAA < 41bp 0.570928140024845 0.786576229403799 0.32930797 0.12984309 prediction 0.431296178757907 Functional Gain - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140953259 chrX:140953260 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_121812 0 0 0 0 1 MAGEC3 chrX:140953257 3'AG 140953257 Downstream 4bp
chr12 122361822 122361822 1 + C T UCEC 122361821 + 122361801 122361841 41 CAGTCCAAAGCAGGGATCTCCCGGGAGTCACTGGTGTCCAG CAGTCCAAAGCAGGGATCTCCTGGGAGTCACTGGTGTCCAG < 41bp 0.569315107168724 0.784959665307733 0.9081068 0.8603087 prediction 0.431289116278018 Functional Gain - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122361821 chr12:122361822 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_121813 0 0 0 0 1 WDR66 chr12:122361896 5'GT 122361896 Upstream 75bp
chrX 48629496 48629496 1 + A G rs182017964 48629493 + 48629473 48629513 41 TGGAGGAAATGATCCAGCACCTCAAGGTGAGTGGGACTTCT TGGAGGAAATGATCCAGCACCTCGAGGTGAGTGGGACTTCT < 41bp 0.541826382992018 0.757458075110706 0.83651483 0.9071521 prediction 0.431263384237376 Functional Gain - GLOD5 ENSG00000171433 CDS Human protein_coding chrX:48629493 chrX:48629496 nonsynonymous SNV 0.955 1 24 hm5C_associated_SNPs_121821 0 0 0 0 1 GLOD5 chrX:48629498 5'GT 48629498 Upstream 3bp
chr1 45479660 45479660 1 + C T BLCA 45479659 + 45479639 45479679 41 AGCGCTGGCTCTATCAGAGACCTCAGGCTAGTCACCAGCTG AGCGCTGGCTCTATCAGAGACTTCAGGCTAGTCACCAGCTG < 41bp 0.442546863751728 0.715626811863971 0.032135338 0.05729124 prediction 0.431253623727941 Functional Gain - UROD ENSG00000126088 CDS Human protein_coding chr1:45479659 chr1:45479660 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_121824 0 0 1 0 2 UROD chr1:45479581 3'AG 45479581 Downstream 80bp
chr1 45479660 45479660 1 + C T BLCA 45479659 + 45479639 45479679 41 AGCGCTGGCTCTATCAGAGACCTCAGGCTAGTCACCAGCTG AGCGCTGGCTCTATCAGAGACTTCAGGCTAGTCACCAGCTG < 41bp 0.442546863751728 0.715626811863971 0.032135338 0.05729124 prediction 0.431253623727941 Functional Gain - UROD ENSG00000126088 CDS Human protein_coding chr1:45479659 chr1:45479660 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_121824 0 0 1 0 2 UROD chr1:45479742 5'GT 45479742 Upstream 83bp
chr1 170508363 170508363 1 + C T BRCA 170508362 + 170508342 170508382 41 TTTACATAGATCCATTTGAACCACAGCGACGTCTCCCCGCG TTTACATAGATCCATTTGAACTACAGCGACGTCTCCCCGCG < 41bp 0.502162743880203 0.717776583599311 0.0260292 0.38195533 prediction 0.431227679438216 Functional Gain - GORAB ENSG00000120370 CDS Human protein_coding chr1:170508362 chr1:170508363 nonsynonymous SNV 0.904 4 22 hm5C_associated_SNPs_121830 0 0 0 0 1 GORAB chr1:170508351 3'AG 170508351 Downstream 13bp
chr19 56163822 56163822 1 + C A STAD 56163821 + 56163801 56163841 41 GACGCCGACGGGGTCCTCTGCCGGTACAAGAAGATCCTGGG GACGCCGACGGGGTCCTCTGCAGGTACAAGAAGATCCTGGG < 41bp 0.454605451315078 0.715612787407302 0.34620982 0.85642594 prediction 0.431225574814605 Functional Gain - CCDC106 ENSG00000173581 CDS Human protein_coding chr19:56163821 chr19:56163822 synonymous SNV . 0 22 hm5C_associated_SNPs_121832 0 0 1 0 1 CCDC106 chr19:56163796 3'AG 56163796 Downstream 27bp
chr13 24466126 24466126 1 - G T LUAD 24466127 - 24466107 24466147 41 GGATCCCCAGGAAAACATGGCCCCAAGGGGCTTGCAGGGCC GGATCCCCAGGAAAACATGGCACCAAGGGGCTTGCAGGGCC < 41bp 0.605461191423084 0.821070190551755 0.22321573 0.08308199 prediction 0.431217998257343 Functional Gain - C1QTNF9B ENSG00000205863 CDS Human protein_coding chr13:24466127 chr13:24466126 nonsynonymous SNV 0.003 4 22 hm5C_associated_SNPs_121835 0 0 0 0 1 C1QTNF9B chr13:24466200 3'AG 24466200 Downstream 75bp
chr11 82921384 82921384 1 + C T HNSC 82921383 + 82921363 82921403 41 AATCTGACAGCCCAGGATGACCGGGGATGCACTCCTTTACA AATCTGACAGCCCAGGATGACTGGGGATGCACTCCTTTACA < 41bp 0.585932598309766 0.801540991521878 0.9029733 0.68583333 prediction 0.431216786424224 Functional Gain - ANKRD42 ENSG00000137494 CDS Human protein_coding chr11:82921383 chr11:82921384 nonsynonymous SNV 0.982 2 22 hm5C_associated_SNPs_121836 0 0 1 0 3 ANKRD42 chr11:82921342 3'AG 82921342 Downstream 43bp
chr11 82921384 82921384 1 + C T HNSC 82921383 + 82921363 82921403 41 AATCTGACAGCCCAGGATGACCGGGGATGCACTCCTTTACA AATCTGACAGCCCAGGATGACTGGGGATGCACTCCTTTACA < 41bp 0.585932598309766 0.801540991521878 0.9029733 0.68583333 prediction 0.431216786424224 Functional Gain - ANKRD42 ENSG00000137494 CDS Human protein_coding chr11:82921383 chr11:82921384 nonsynonymous SNV 0.982 2 22 hm5C_associated_SNPs_121836 0 0 1 0 3 ANKRD42 chr11:82921458 5'GT 82921458 Upstream 75bp
chr11 82921384 82921384 1 + C T HNSC 82921383 + 82921363 82921403 41 AATCTGACAGCCCAGGATGACCGGGGATGCACTCCTTTACA AATCTGACAGCCCAGGATGACTGGGGATGCACTCCTTTACA < 41bp 0.585932598309766 0.801540991521878 0.9029733 0.68583333 prediction 0.431216786424224 Functional Gain - ANKRD42 ENSG00000137494 CDS Human protein_coding chr11:82921383 chr11:82921384 nonsynonymous SNV 0.982 2 22 hm5C_associated_SNPs_121836 0 0 1 0 3 ANKRD42 chr11:82921461 5'GT 82921461 Upstream 78bp
chr16 72057375 72057375 1 + C T PRAD 72057374 + 72057354 72057394 41 GCCATGTGCTTCTCTGTAGGCCGAGTTCCCATAATTGGGGT GCCATGTGCTTCTCTGTAGGCTGAGTTCCCATAATTGGGGT < 41bp 0.482556115865659 0.715607281590254 0.3124106 0.23353201 prediction 0.431214563180508 Functional Gain - DHODH ENSG00000102967 CDS Human protein_coding chr16:72057374 chr16:72057375 stopgain 0.691 1 22 hm5C_associated_SNPs_121837 0 0 0 0 1 DHODH chr16:72057373 3'AG 72057373 Downstream 3bp
chr19 1299917 1299917 1 + C G rs530063037 1299916 + 1299896 1299936 41 CCTCTTCCTCAGCACCATCCCCGTGCTCTGGACCCTCCTGG CCTCTTCCTCAGCACCATCCCGGTGCTCTGGACCCTCCTGG < 41bp 0.400794028830156 0.715601754800806 0.29817718 0.87546533 prediction 0.431203509601612 Functional Gain - EFNA2 ENSG00000099617 CDS Human protein_coding chr19:1299916 chr19:1299917 synonymous SNV . 0 22 hm5C_associated_SNPs_121839 0 0 1 0 1 EFNA2 chr19:1299823 3'AG 1299823 Downstream 95bp
chr7 107545882 107545882 1 + A G UCEC 107545879 + 107545859 107545899 41 TACGAAAGCTGATGGCGGCACTCAGGTTATTGATACAAAGA TACGAAAGCTGATGGCGGCACTCGGGTTATTGATACAAAGA < 41bp 0.484008209615996 0.715599206086106 0.0620113 0.14561644 prediction 0.431198412172211 Functional Gain - DLD ENSG00000091140 CDS Human protein_coding chr7:107545879 chr7:107545882 nonsynonymous SNV 0.983 1 24 hm5C_associated_SNPs_121840 0 0 1 1 2 DLD chr7:107545806 3'AG 107545806 Downstream 77bp
chr7 107545882 107545882 1 + A G UCEC 107545879 + 107545859 107545899 41 TACGAAAGCTGATGGCGGCACTCAGGTTATTGATACAAAGA TACGAAAGCTGATGGCGGCACTCGGGTTATTGATACAAAGA < 41bp 0.484008209615996 0.715599206086106 0.0620113 0.14561644 prediction 0.431198412172211 Functional Gain - DLD ENSG00000091140 CDS Human protein_coding chr7:107545879 chr7:107545882 nonsynonymous SNV 0.983 1 24 hm5C_associated_SNPs_121840 0 0 1 1 2 DLD chr7:107545949 5'GT 107545949 Upstream 68bp
chr19 58038908 58038908 1 + C G rs111934070 58038904 + 58038884 58038924 41 ACGCCGGATCCCGGGCTTTACCGCCCGCCTTTCCAGGCCCC ACGCCGGATCCCGGGCTTTACCGCGCGCCTTTCCAGGCCCC < 41bp 0.544673780529251 0.760268788766939 0.643948 0.8783766 prediction 0.431190016475378 Functional Gain - ZNF549 ENSG00000121406 UTR5 Human protein_coding chr19:58038904 chr19:58038908 . . 0 25 hm5C_associated_SNPs_121844 0 0 1 0 1 ZNF549 chr19:58038974 5'GT 58038974 Upstream 67bp
chr12 51888828 51888828 1 + C A UCEC 51888824 + 51888804 51888844 41 CTGCGCAAAGTGCACCTCTTCACCCTCATCCAGTTGACCTG CTGCGCAAAGTGCACCTCTTCACCATCATCCAGTTGACCTG < 41bp 0.313914632230654 0.715594500554645 0.04665774 0.02249235 prediction 0.431189001109291 Functional Gain - SLC4A8 ENSG00000050438 CDS Human protein_coding chr12:51888824 chr12:51888828 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_121845 0 0 0 0 2 SLC4A8 chr12:51888729 3'AG 51888729 Downstream 100bp
chr12 51888828 51888828 1 + C A UCEC 51888824 + 51888804 51888844 41 CTGCGCAAAGTGCACCTCTTCACCCTCATCCAGTTGACCTG CTGCGCAAAGTGCACCTCTTCACCATCATCCAGTTGACCTG < 41bp 0.313914632230654 0.715594500554645 0.04665774 0.02249235 prediction 0.431189001109291 Functional Gain - SLC4A8 ENSG00000050438 CDS Human protein_coding chr12:51888824 chr12:51888828 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_121845 0 0 0 0 2 SLC4A8 chr12:51888902 5'GT 51888902 Upstream 75bp
chr12 101880210 101880210 1 + C A UCEC 101880209 + 101880189 101880229 41 TATTCAGTGGGTAGATAAAACCAAAGGCATCTTTCAGTTTG TATTCAGTGGGTAGATAAAACAAAAGGCATCTTTCAGTTTG < 41bp 0.602442131966588 0.818034354052206 0.2026782 0.27883175 prediction 0.431184444171236 Functional Gain - SPIC ENSG00000166211 CDS Human protein_coding chr12:101880209 chr12:101880210 synonymous SNV . 0 22 hm5C_associated_SNPs_121846 0 0 0 0 1 SPIC chr12:101880122 3'AG 101880122 Downstream 89bp
chr12 52307367 52307367 1 + C G LUAD 52307366 + 52307346 52307386 41 CCCAACCTCCTTCGGAGCAGCCGGGAACAGATGGCCAGCTG CCCAACCTCCTTCGGAGCAGCGGGGAACAGATGGCCAGCTG < 41bp 0.68051247309262 0.89608637149751 0.76719654 0.89768577 prediction 0.431147796809781 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52307366 chr12:52307367 nonsynonymous SNV 0.157 1 22 hm5C_associated_SNPs_121848 0 0 0 0 1 ACVRL1 chr12:52307343 3'AG 52307343 Downstream 25bp
chr4 148555359 148555359 1 + C T SKCM 148555358 + 148555338 148555378 41 ATCCCAGGAAAAAATTGTTTCCCGAGGATCAAGATCAAAAT ATCCCAGGAAAAAATTGTTTCTCGAGGATCAAGATCAAAAT < 41bp 0.601450545098988 0.817022878794854 0.6379227 0.35275954 prediction 0.431144667391732 Functional Gain - TMEM184C ENSG00000164168 CDS Human protein_coding chr4:148555358 chr4:148555359 nonsynonymous SNV 0.241 0 22 hm5C_associated_SNPs_121849 0 0 1 0 1 TMEM184C chr4:148555320 3'AG 148555320 Downstream 40bp
chr5 79950745 79950745 1 + C G rs557874766 79950744 + 79950724 79950764 41 GCCGCAGCGCCCCCAGCGCCCCCAGCTCCCGCCTTCCCGCC GCCGCAGCGCCCCCAGCGCCCGCAGCTCCCGCCTTCCCGCC < 41bp 0.660252459612939 0.875811575298849 0.24387735 0.30143195 prediction 0.43111823137182 Functional Gain - MSH3 ENSG00000113318 CDS Human protein_coding chr5:79950744 chr5:79950745 nonsynonymous SNV 0.183 1 22 hm5C_associated_SNPs_121855 0 0 0 0 1 MSH3 chr5:79950783 5'GT 79950783 Upstream 39bp
chr2 103128707 103128707 1 + T C LUAD 103128704 + 103128684 103128724 41 GAATCGAAGATGTGTGTGGGCACTGGAGTCACTACCAAGTG GAATCGAAGATGTGTGTGGGCACCGGAGTCACTACCAAGTG < 41bp 0.498098992985599 0.715546140455719 0.40925807 0.63758934 prediction 0.431092280911439 Functional Gain - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103128704 chr2:103128707 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_121859 0 0 0 0 2 SLC9A4 chr2:103128662 3'AG 103128662 Downstream 46bp
chr2 103128707 103128707 1 + T C LUAD 103128704 + 103128684 103128724 41 GAATCGAAGATGTGTGTGGGCACTGGAGTCACTACCAAGTG GAATCGAAGATGTGTGTGGGCACCGGAGTCACTACCAAGTG < 41bp 0.498098992985599 0.715546140455719 0.40925807 0.63758934 prediction 0.431092280911439 Functional Gain - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103128704 chr2:103128707 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_121859 0 0 0 0 2 SLC9A4 chr2:103128732 5'GT 103128732 Upstream 26bp
chr6 31783437 31783437 1 - T C rs11557922 31783440 - 31783420 31783460 41 AGCTCGGTCCTTCCGGACGCCGGAAACTCGACGCGCCGGTG AGCTCGGTCCTTCCGGACGCCGGGAACTCGACGCGCCGGTG < 41bp 0.512684493770953 0.728216988640505 0.9107263 0.91950524 prediction 0.431064989739103 Functional Gain - HSPA1A ENSG00000204389;ENSG00000204390 UTR5 Human other chr6:31783440 chr6:31783437 . . 0 24 hm5C_associated_SNPs_121864 0 0 0 0 1 HSPA1A chr6:31783358 5'GT 31783358 Upstream 80bp
chr17 55083586 55083586 1 + A G COAD 55083583 + 55083563 55083603 41 GAAGATGATGAGACTGGTGACTCAGCAAGAATAGGATGGAT GAAGATGATGAGACTGGTGACTCGGCAAGAATAGGATGGAT < 41bp 0.555113498231785 0.770642454207363 0.11691308 0.070032954 prediction 0.431057911951156 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55083583 chr17:55083586 nonsynonymous SNV 0.936 0 24 hm5C_associated_SNPs_121865 0 0 1 0 1 SCPEP1 chr17:55083534 3'AG 55083534 Downstream 53bp
chr18 2908947 2908947 1 + C A THCA 2908946 + 2908926 2908966 41 CTTTCTGTTTTTCAGGATACCCGAAGTCACCTCCTGTAGCT CTTTCTGTTTTTCAGGATACCAGAAGTCACCTCCTGTAGCT < 41bp 0.445386357848116 0.715528341508152 0.32296687 0.42781863 prediction 0.431056683016304 Functional Gain - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2908946 chr18:2908947 nonsynonymous SNV 0.801 2 22 hm5C_associated_SNPs_121866 0 0 1 0 2 EMILIN2 chr18:2908941 3'AG 2908941 Downstream 7bp
chr18 2908947 2908947 1 + C A THCA 2908946 + 2908926 2908966 41 CTTTCTGTTTTTCAGGATACCCGAAGTCACCTCCTGTAGCT CTTTCTGTTTTTCAGGATACCAGAAGTCACCTCCTGTAGCT < 41bp 0.445386357848116 0.715528341508152 0.32296687 0.42781863 prediction 0.431056683016304 Functional Gain - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2908946 chr18:2908947 nonsynonymous SNV 0.801 2 22 hm5C_associated_SNPs_121866 0 0 1 0 2 EMILIN2 chr18:2908973 5'GT 2908973 Upstream 27bp
chr10 26800807 26800807 1 + T G UCEC 26800805 + 26800785 26800825 41 ACTGCAATGTAGACTGGTGTCTTTATGAAATCTACCCGGAA ACTGCAATGTAGACTGGTGTCTGTATGAAATCTACCCGGAA < 41bp 0.387959700271287 0.71552737809417 0.15822041 0.16425544 prediction 0.431054756188339 Functional Gain - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26800805 chr10:26800807 synonymous SNV . 0 23 hm5C_associated_SNPs_121868 0 0 0 0 1 APBB1IP chr10:26800835 5'GT 26800835 Upstream 29bp
chr16 89779110 89779110 1 - A G LUSC 89779113 - 89779093 89779133 41 CATTTCCAGAGAGCTGACGCCACTGGAGGAGGCCTCCCTGC CATTTCCAGAGAGCTGACGCCACCGGAGGAGGCCTCCCTGC < 41bp 0.511078429481579 0.726598385206388 0.8583496 0.8600308 prediction 0.431039911449617 Functional Gain - VPS9D1 ENSG00000075399 CDS Human protein_coding chr16:89779113 chr16:89779110 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_121871 0 0 0 0 2 VPS9D1 chr16:89779013 5'GT 89779013 Upstream 98bp
chr16 89779110 89779110 1 - A G LUSC 89779113 - 89779093 89779133 41 CATTTCCAGAGAGCTGACGCCACTGGAGGAGGCCTCCCTGC CATTTCCAGAGAGCTGACGCCACCGGAGGAGGCCTCCCTGC < 41bp 0.511078429481579 0.726598385206388 0.8583496 0.8600308 prediction 0.431039911449617 Functional Gain - VPS9D1 ENSG00000075399 CDS Human protein_coding chr16:89779113 chr16:89779110 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_121871 0 0 0 0 2 VPS9D1 chr16:89779124 3'AG 89779124 Downstream 15bp
chr5 78411713 78411713 1 + C T UCEC 78411712 + 78411692 78411732 41 CCTGAAGCTGCTGTGGAGCACCCAGAAGCAGGTTGGTGCAG CCTGAAGCTGCTGTGGAGCACTCAGAAGCAGGTTGGTGCAG < 41bp 0.592938570669812 0.808457468123904 0.20577863 0.1258986 prediction 0.431037794908183 Functional Gain - BHMT ENSG00000145692 CDS Human protein_coding chr5:78411712 chr5:78411713 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_121872 0 0 0 0 1 BHMT chr5:78411722 5'GT 78411722 Upstream 10bp
chr6 10751379 10751379 1 + C T rs1046427 10751378 + 10751358 10751398 41 CCTTCTAGGCAGCGTGCCGTCCCTGGCTGCAGGGCTGCTCT CCTTCTAGGCAGCGTGCCGTCTCTGGCTGCAGGGCTGCTCT < 41bp 0.47975775467589 0.715518828743879 0.16090426 0.2619835 prediction 0.431037657487757 Functional Gain - TMEM14B ENSG00000137210 CDS Human protein_coding chr6:10751378 chr6:10751379 synonymous SNV . 0 22 hm5C_associated_SNPs_121873 0 0 1 0 2 TMEM14B chr6:10751366 3'AG 10751366 Downstream 14bp
chr6 10751379 10751379 1 + C T rs1046427 10751378 + 10751358 10751398 41 CCTTCTAGGCAGCGTGCCGTCCCTGGCTGCAGGGCTGCTCT CCTTCTAGGCAGCGTGCCGTCTCTGGCTGCAGGGCTGCTCT < 41bp 0.47975775467589 0.715518828743879 0.16090426 0.2619835 prediction 0.431037657487757 Functional Gain - TMEM14B ENSG00000137210 CDS Human protein_coding chr6:10751378 chr6:10751379 synonymous SNV . 0 22 hm5C_associated_SNPs_121873 0 0 1 0 2 TMEM14B chr6:10751467 5'GT 10751467 Upstream 89bp
chr13 107028978 107028978 1 + T C rs528124846 107028976 + 107028956 107028996 41 GGGGGACTCATCTCCTCAAACCTGGGGGACCGAGACCTATG GGGGGACTCATCTCCTCAAACCCGGGGGACCGAGACCTATG < 41bp 0.497637352767087 0.715513983280859 0.57596886 0.8105105 prediction 0.431027966561717 Functional Gain - LINC00460 ENSG00000233532 ncRNA_exonic Human lincRNA chr13:107028976 chr13:107028978 . . 0 23 hm5C_associated_SNPs_121875 0 0 0 0 1 LINC00460 chr13:107029013 5'GT 107029013 Upstream 36bp
chr3 45043095 45043095 1 + T C rs34376719 45043092 + 45043072 45043112 41 GCTGTAAAGGCTGCTCTCTTCAATACAAGGTAAGTCTTCCT GCTGTAAAGGCTGCTCTCTTCAACACAAGGTAAGTCTTCCT < 41bp 0.539692974910773 0.75520678147529 0.054318607 0.05693072 prediction 0.431027613129036 Functional Gain - EXOSC7 ENSG00000075914 CDS Human protein_coding chr3:45043092 chr3:45043095 synonymous SNV . 0 24 hm5C_associated_SNPs_121876 0 0 1 0 2 EXOSC7 chr3:45043030 3'AG 45043030 Downstream 66bp
chr3 45043095 45043095 1 + T C rs34376719 45043092 + 45043072 45043112 41 GCTGTAAAGGCTGCTCTCTTCAATACAAGGTAAGTCTTCCT GCTGTAAAGGCTGCTCTCTTCAACACAAGGTAAGTCTTCCT < 41bp 0.539692974910773 0.75520678147529 0.054318607 0.05693072 prediction 0.431027613129036 Functional Gain - EXOSC7 ENSG00000075914 CDS Human protein_coding chr3:45043092 chr3:45043095 synonymous SNV . 0 24 hm5C_associated_SNPs_121876 0 0 1 0 2 EXOSC7 chr3:45043100 5'GT 45043100 Upstream 6bp
chr5 192470 192470 1 + C T COAD 192469 + 192449 192489 41 CCCCTCCTCGCCTCCATCGCCCGGGAGCTCAGCAAGATGGC CCCCTCCTCGCCTCCATCGCCTGGGAGCTCAGCAAGATGGC < 41bp 0.542006466542017 0.757518629610495 0.8269187 0.464581 prediction 0.431024326136957 Functional Gain - LRRC14B ENSG00000185028 CDS Human protein_coding chr5:192469 chr5:192470 nonsynonymous SNV 0.096 1 22 hm5C_associated_SNPs_121877 0 0 0 0 1 LRRC14B chr5:192552 5'GT 192552 Upstream 83bp
chr1 207646163 207646163 1 + C A rs34349246 207646162 + 207646142 207646182 41 TATCTACAATGGGGCACACACCGGGAGTTCCTTAGAAGATT TATCTACAATGGGGCACACACAGGGAGTTCCTTAGAAGATT < 41bp 0.626874960293367 0.842385549127017 0.93468404 0.93965423 prediction 0.4310211776673 Functional Gain - CR2 ENSG00000117322 CDS Human protein_coding chr1:207646162 chr1:207646163 synonymous SNV . 0 22 hm5C_associated_SNPs_121878 0 0 0 0 1 CR2 chr1:207646117 3'AG 207646117 Downstream 47bp
chr1 152484077 152484077 1 + A G UCEC 152484074 + 152484054 152484094 41 AATGTACCCCTAAATGCCCTCCCAAGTGTACTCCTAAGTGT AATGTACCCCTAAATGCCCTCCCGAGTGTACTCCTAAGTGT < 41bp 0.575605535678157 0.791107799301169 0.090311915 0.052927673 prediction 0.431004527246025 Functional Gain - LCE5A ENSG00000186207 CDS Human protein_coding chr1:152484074 chr1:152484077 nonsynonymous SNV 0.258 3 24 hm5C_associated_SNPs_121884 0 0 0 0 1 LCE5A chr1:152483990 3'AG 152483990 Downstream 88bp
chr16 31499977 31499977 1 + C T STAD 31499976 + 31499956 31499996 41 CATGCTGGCGGTCATGCTGGCCGCGCTCATGTCCTCGCTGG CATGCTGGCGGTCATGCTGGCTGCGCTCATGTCCTCGCTGG < 41bp 0.478121560404652 0.715498408735437 0.113330275 0.1035347 prediction 0.430996817470873 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31499976 chr16:31499977 synonymous SNV . 0 22 hm5C_associated_SNPs_121886 0 0 0 0 1 SLC5A2 chr16:31499943 3'AG 31499943 Downstream 35bp
chr10 50349379 50349379 1 + A G rs11814668 50349376 + 50349356 50349396 41 CTTCTTCGGAAATTTCAGGCCACAAATGGCAGTGATGCGAC CTTCTTCGGAAATTTCAGGCCACGAATGGCAGTGATGCGAC < 41bp 0.497372059157571 0.715497058320112 0.15260759 0.13041729 prediction 0.430994116640225 Functional Gain - FAM170B-AS1 ENSG00000234736 ncRNA_exonic Human antisense chr10:50349376 chr10:50349379 . . 0 24 hm5C_associated_SNPs_121888 0 0 0 0 2 FAM170B-AS1 chr10:50349298 3'AG 50349298 Downstream 82bp
chr10 50349379 50349379 1 + A G rs11814668 50349376 + 50349356 50349396 41 CTTCTTCGGAAATTTCAGGCCACAAATGGCAGTGATGCGAC CTTCTTCGGAAATTTCAGGCCACGAATGGCAGTGATGCGAC < 41bp 0.497372059157571 0.715497058320112 0.15260759 0.13041729 prediction 0.430994116640225 Functional Gain - FAM170B-AS1 ENSG00000234736 ncRNA_exonic Human antisense chr10:50349376 chr10:50349379 . . 0 24 hm5C_associated_SNPs_121888 0 0 0 0 2 FAM170B-AS1 chr10:50349412 5'GT 50349412 Upstream 34bp
chr16 87678559 87678559 1 + C T STAD 87678558 + 87678538 87678578 41 CCCCTGCGGGCCAGCAAGATCCGCGAGAAGGTGGACCGCGC CCCCTGCGGGCCAGCAAGATCTGCGAGAAGGTGGACCGCGC < 41bp 0.605687787183226 0.821174744757112 0.862806 0.71731836 prediction 0.430973915147772 Functional Gain - JPH3 ENSG00000154118 CDS Human protein_coding chr16:87678558 chr16:87678559 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_121891 0 0 1 0 1 JPH3 chr16:87678641 5'GT 87678641 Upstream 83bp
chr16 70505194 70505194 1 + C G rs376353924 70505190 + 70505170 70505210 41 ACCTTGTCCTGCAGGGACACCACACGCGGCTACACGGCTCC ACCTTGTCCTGCAGGGACACCACAGGCGGCTACACGGCTCC < 41bp 0.415232127826916 0.715486370937174 0.5166691 0.8690975 prediction 0.430972741874349 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70505190 chr16:70505194 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_121893 0 0 1 0 2 FUK chr16:70505101 3'AG 70505101 Downstream 94bp
chr16 70505194 70505194 1 + C G rs376353924 70505190 + 70505170 70505210 41 ACCTTGTCCTGCAGGGACACCACACGCGGCTACACGGCTCC ACCTTGTCCTGCAGGGACACCACAGGCGGCTACACGGCTCC < 41bp 0.415232127826916 0.715486370937174 0.5166691 0.8690975 prediction 0.430972741874349 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70505190 chr16:70505194 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_121893 0 0 1 0 2 FUK chr16:70505255 5'GT 70505255 Upstream 62bp
chr22 43677982 43677982 1 + C A rs150965790 43677981 + 43677961 43678001 41 ACGAGGACTCCTCTGGCCAACCGGAACAAGCTGGAATCTTC ACGAGGACTCCTCTGGCCAACAGGAACAAGCTGGAATCTTC < 41bp 0.57403584948154 0.789510012945296 0.24886739 0.5258683 prediction 0.430948326927512 Functional Gain - LOC101927447 ENSG00000203527 ncRNA_exonic Human antisense chr22:43677981 chr22:43677982 . . 0 22 hm5C_associated_SNPs_121895 0 0 0 0 1 LOC101927447 chr22:43677943 3'AG 43677943 Downstream 40bp
chr19 56172483 56172483 1 + C T STAD 56172482 + 56172462 56172502 41 TGTGACCCCAACGCCGGTGCCCGTGGTCGGGAGCCAGATGA TGTGACCCCAACGCCGGTGCCTGTGGTCGGGAGCCAGATGA < 41bp 0.465722686038179 0.715471817662643 0.3998486 0.07295331 prediction 0.430943635325285 Functional Gain - U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172482 chr19:56172483 synonymous SNV . 0 22 hm5C_associated_SNPs_121896 0 0 1 0 2 U2AF2 chr19:56172404 3'AG 56172404 Downstream 80bp
chr19 56172483 56172483 1 + C T STAD 56172482 + 56172462 56172502 41 TGTGACCCCAACGCCGGTGCCCGTGGTCGGGAGCCAGATGA TGTGACCCCAACGCCGGTGCCTGTGGTCGGGAGCCAGATGA < 41bp 0.465722686038179 0.715471817662643 0.3998486 0.07295331 prediction 0.430943635325285 Functional Gain - U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172482 chr19:56172483 synonymous SNV . 0 22 hm5C_associated_SNPs_121896 0 0 1 0 2 U2AF2 chr19:56172555 5'GT 56172555 Upstream 73bp
chr15 59784493 59784493 1 + C T rs4296198 59784492 + 59784472 59784512 41 ACTCCAGGAGCAGATTCGTGCCCGGGACAACATTAGCTATG ACTCCAGGAGCAGATTCGTGCTCGGGACAACATTAGCTATG < 41bp 0.598461359520082 0.813929549699172 0.8784242 0.75607324 prediction 0.43093638035818 Functional Gain - FAM81A ENSG00000157470 CDS Human protein_coding chr15:59784492 chr15:59784493 synonymous SNV . 0 22 hm5C_associated_SNPs_121897 0 0 0 0 2 FAM81A chr15:59784470 3'AG 59784470 Downstream 24bp
chr15 59784493 59784493 1 + C T rs4296198 59784492 + 59784472 59784512 41 ACTCCAGGAGCAGATTCGTGCCCGGGACAACATTAGCTATG ACTCCAGGAGCAGATTCGTGCTCGGGACAACATTAGCTATG < 41bp 0.598461359520082 0.813929549699172 0.8784242 0.75607324 prediction 0.43093638035818 Functional Gain - FAM81A ENSG00000157470 CDS Human protein_coding chr15:59784492 chr15:59784493 synonymous SNV . 0 22 hm5C_associated_SNPs_121897 0 0 0 0 2 FAM81A chr15:59784588 5'GT 59784588 Upstream 96bp
chr17 41365219 41365219 1 + T G BRCA 41365215 + 41365195 41365235 41 TGTGCCTTGTGAAGGAACTGCTGATGCCAGCTTCGTGACTT TGTGCCTTGTGAAGGAACTGCTGAGGCCAGCTTCGTGACTT < 41bp 0.500447125152576 0.715914210210624 0.14223248 0.5688679 prediction 0.430934170116095 Functional Gain - TMEM106A ENSG00000184988 CDS Human protein_coding chr17:41365215 chr17:41365219 nonsynonymous SNV 0.837 0 25 hm5C_associated_SNPs_121898 0 0 1 0 2 TMEM106A chr17:41365209 3'AG 41365209 Downstream 11bp
chr17 41365219 41365219 1 + T G BRCA 41365215 + 41365195 41365235 41 TGTGCCTTGTGAAGGAACTGCTGATGCCAGCTTCGTGACTT TGTGCCTTGTGAAGGAACTGCTGAGGCCAGCTTCGTGACTT < 41bp 0.500447125152576 0.715914210210624 0.14223248 0.5688679 prediction 0.430934170116095 Functional Gain - TMEM106A ENSG00000184988 CDS Human protein_coding chr17:41365215 chr17:41365219 nonsynonymous SNV 0.837 0 25 hm5C_associated_SNPs_121898 0 0 1 0 2 TMEM106A chr17:41365271 5'GT 41365271 Upstream 53bp
chr6 33170194 33170194 1 + T C rs34836401 33170192 + 33170172 33170212 41 ATACACGTGGAAGTCATGGACATGGAAGACAAGGTGAGCCC ATACACGTGGAAGTCATGGACACGGAAGACAAGGTGAGCCC < 41bp 0.491273614026252 0.715460694334465 0.2593642 0.33169955 prediction 0.43092138866893 Functional Gain - SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33170192 chr6:33170194 synonymous SNV . 0 23 hm5C_associated_SNPs_121900 0 0 1 0 1 SLC39A7 chr6:33170204 5'GT 33170204 Upstream 11bp
chr5 153783753 153783753 1 + C T rs6580076 153783752 + 153783732 153783772 41 TGTGCCCTACAAGGTCCCGGCCGGAGTCAGCCTGGCCCGGG TGTGCCCTACAAGGTCCCGGCTGGAGTCAGCCTGGCCCGGG < 41bp 0.589354380978797 0.804813097812439 0.46973965 0.34497112 prediction 0.430917433667284 Functional Gain - GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153783752 chr5:153783753 synonymous SNV . 0 22 hm5C_associated_SNPs_121901 0 0 1 0 2 GALNT10 chr5:153783664 3'AG 153783664 Downstream 90bp
chr5 153783753 153783753 1 + C T rs6580076 153783752 + 153783732 153783772 41 TGTGCCCTACAAGGTCCCGGCCGGAGTCAGCCTGGCCCGGG TGTGCCCTACAAGGTCCCGGCTGGAGTCAGCCTGGCCCGGG < 41bp 0.589354380978797 0.804813097812439 0.46973965 0.34497112 prediction 0.430917433667284 Functional Gain - GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153783752 chr5:153783753 synonymous SNV . 0 22 hm5C_associated_SNPs_121901 0 0 1 0 2 GALNT10 chr5:153783771 5'GT 153783771 Upstream 19bp
chr15 69652439 69652439 1 + C G rs115675417 69652435 + 69652415 69652455 41 CCAAGATGCTGAGCCTGAAGCTCCCCAGGCTGTTTAGCATA CCAAGATGCTGAGCCTGAAGCTCCGCAGGCTGTTTAGCATA < 41bp 0.414627403913657 0.715456678640643 0.019604027 0.04170668 prediction 0.430913357281286 Functional Gain - PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69652435 chr15:69652439 nonsynonymous SNV 0.563 4 25 hm5C_associated_SNPs_121902 0 0 0 0 1 PAQR5 chr15:69652470 5'GT 69652470 Upstream 32bp
chr3 10329774 10329774 1 + C G rs115092192 10329770 + 10329750 10329790 41 CTGCTGGCCTGGCCTAACACCTGGCGCTGTGGTGCAGGCAA CTGCTGGCCTGGCCTAACACCTGGGGCTGTGGTGCAGGCAA < 41bp 0.626478682325157 0.841931996838569 0.7496923 0.8894942 prediction 0.430906629026823 Functional Gain - GHRLOS ENSG00000240288 ncRNA_exonic Human antisense chr3:10329770 chr3:10329774 . . 0 25 hm5C_associated_SNPs_121903 0 0 0 0 2 GHRLOS chr3:10329686 3'AG 10329686 Downstream 89bp
chr3 10329774 10329774 1 + C G rs115092192 10329770 + 10329750 10329790 41 CTGCTGGCCTGGCCTAACACCTGGCGCTGTGGTGCAGGCAA CTGCTGGCCTGGCCTAACACCTGGGGCTGTGGTGCAGGCAA < 41bp 0.626478682325157 0.841931996838569 0.7496923 0.8894942 prediction 0.430906629026823 Functional Gain - GHRLOS ENSG00000240288 ncRNA_exonic Human antisense chr3:10329770 chr3:10329774 . . 0 25 hm5C_associated_SNPs_121903 0 0 0 0 2 GHRLOS chr3:10329790 5'GT 10329790 Upstream 17bp
chr8 145537689 145537689 1 + C G SKCM 145537688 + 145537668 145537708 41 CCAGGAGCCCCCCAGGCCTCCCGAGGCAGAGAACAGCAGCC CCAGGAGCCCCCCAGGCCTCCGGAGGCAGAGAACAGCAGCC < 41bp 0.392913762973683 0.71544733265303 0.7123674 0.89389443 prediction 0.430894665306061 Functional Gain - HSF1 ENSG00000185122 CDS Human protein_coding chr8:145537688 chr8:145537689 synonymous SNV . 0 22 hm5C_associated_SNPs_121904 0 0 1 0 2 HSF1 chr8:145537648 3'AG 145537648 Downstream 42bp
chr8 145537689 145537689 1 + C G SKCM 145537688 + 145537668 145537708 41 CCAGGAGCCCCCCAGGCCTCCCGAGGCAGAGAACAGCAGCC CCAGGAGCCCCCCAGGCCTCCGGAGGCAGAGAACAGCAGCC < 41bp 0.392913762973683 0.71544733265303 0.7123674 0.89389443 prediction 0.430894665306061 Functional Gain - HSF1 ENSG00000185122 CDS Human protein_coding chr8:145537688 chr8:145537689 synonymous SNV . 0 22 hm5C_associated_SNPs_121904 0 0 1 0 2 HSF1 chr8:145537717 5'GT 145537717 Upstream 29bp
chr3 195953859 195953859 1 + C G SARC 195953858 + 195953838 195953878 41 CTGGGCCCTGTGGAACTTGCCCTCACTAGCATCCTGACCTT CTGGGCCCTGTGGAACTTGCCGTCACTAGCATCCTGACCTT < 41bp 0.383321840452789 0.71544158231587 0.08182117 0.23453861 prediction 0.43088316463174 Functional Gain - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195953858 chr3:195953859 nonsynonymous SNV 0.757 0 22 hm5C_associated_SNPs_121905 0 0 1 0 1 SLC51A chr3:195953836 3'AG 195953836 Downstream 24bp
chr16 22580509 22580509 1 + C T rs546736623 22580508 + 22580488 22580528 41 GGATTAACTAAGGCAGAGCTCCGGATGCTTGACAAGGATTT GGATTAACTAAGGCAGAGCTCTGGATGCTTGACAAGGATTT < 41bp 0.530368379349292 0.745798909207718 0.6914351 0.2885942 prediction 0.430861059716853 Functional Gain - LOC653786 ENSG00000257838 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:22580508 chr16:22580509 . . 0 22 hm5C_associated_SNPs_121911 0 0 0 0 2 LOC653786 chr16:22580486 3'AG 22580486 Downstream 24bp
chr16 22580509 22580509 1 + C T rs546736623 22580508 + 22580488 22580528 41 GGATTAACTAAGGCAGAGCTCCGGATGCTTGACAAGGATTT GGATTAACTAAGGCAGAGCTCTGGATGCTTGACAAGGATTT < 41bp 0.530368379349292 0.745798909207718 0.6914351 0.2885942 prediction 0.430861059716853 Functional Gain - LOC653786 ENSG00000257838 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:22580508 chr16:22580509 . . 0 22 hm5C_associated_SNPs_121911 0 0 0 0 2 LOC653786 chr16:22580583 5'GT 22580583 Upstream 75bp
chr17 18661754 18661754 1 + C A UCEC 18661753 + 18661733 18661773 41 CGAGGCCATGCTGGGAGTGTCCGGGCCCTCTTCCTGTGTGA CGAGGCCATGCTGGGAGTGTCAGGGCCCTCTTCCTGTGTGA < 41bp 0.631691903590395 0.847121995555518 0.89338034 0.9232763 prediction 0.430860183930247 Functional Gain - FBXW10 ENSG00000171931 CDS Human protein_coding chr17:18661753 chr17:18661754 synonymous SNV . 0 22 hm5C_associated_SNPs_121912 0 0 0 0 1 FBXW10 chr17:18661818 5'GT 18661818 Upstream 65bp
chr9 139685808 139685808 1 + C G rs201674770 139685807 + 139685787 139685827 41 CGCCTGCGCAGGCCCGCTCCCCGAGCCCTGCCAACCATGGT CGCCTGCGCAGGCCCGCTCCCGGAGCCCTGCCAACCATGGT < 41bp 0.615467174323635 0.830895549490677 0.8871969 0.93516666 prediction 0.430856750334084 Functional Gain - TMEM141 ENSG00000244187 UTR5 Human other chr9:139685807 chr9:139685808 . . 0 22 hm5C_associated_SNPs_121913 0 0 0 0 1 TMEM141 chr9:139685876 5'GT 139685876 Upstream 69bp
chr17 6798256 6798256 1 + C T CESC 6798255 + 6798235 6798275 41 CTATAGCAGGGAATAGGCAACCGGACCTTCCTAGGGACGAG CTATAGCAGGGAATAGGCAACTGGACCTTCCTAGGGACGAG < 41bp 0.500424785058131 0.71585275808475 0.5094311 0.46359888 prediction 0.430855946053238 Functional Gain - ALOX12P2 ENSG00000262943 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:6798255 chr17:6798256 . . 0 22 hm5C_associated_SNPs_121914 0 0 0 0 1 ALOX12P2 chr17:6798203 3'AG 6798203 Downstream 54bp
chr5 156723745 156723745 1 + C T STAD 156723744 + 156723724 156723764 41 AGACAGTAGAGGTGCTGGAGCCGGAGGTCACCAAGCTCATG AGACAGTAGAGGTGCTGGAGCTGGAGGTCACCAAGCTCATG < 41bp 0.592971741889324 0.808398852200081 0.72563386 0.36775917 prediction 0.430854220621512 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156723744 chr5:156723745 nonsynonymous SNV 0.884 4 22 hm5C_associated_SNPs_121915 0 0 1 0 1 CYFIP2 chr5:156723782 5'GT 156723782 Upstream 38bp
chr9 131476565 131476565 1 + C A KIRP 131476564 + 131476544 131476584 41 CTGCTGCCCCCCTGCAGCTCCCCGAGCACAATCAGCCCCCC CTGCTGCCCCCCTGCAGCTCCACGAGCACAATCAGCCCCCC < 41bp 0.620676009760143 0.836086320539859 0.29839867 0.24790621 prediction 0.430820621559431 Functional Gain - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131476564 chr9:131476565 nonsynonymous SNV 0.955 0 22 hm5C_associated_SNPs_121917 0 0 1 0 2 PKN3 chr9:131476476 3'AG 131476476 Downstream 90bp
chr9 131476565 131476565 1 + C A KIRP 131476564 + 131476544 131476584 41 CTGCTGCCCCCCTGCAGCTCCCCGAGCACAATCAGCCCCCC CTGCTGCCCCCCTGCAGCTCCACGAGCACAATCAGCCCCCC < 41bp 0.620676009760143 0.836086320539859 0.29839867 0.24790621 prediction 0.430820621559431 Functional Gain - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131476564 chr9:131476565 nonsynonymous SNV 0.955 0 22 hm5C_associated_SNPs_121917 0 0 1 0 2 PKN3 chr9:131476644 5'GT 131476644 Upstream 80bp
chr2 108921145 108921145 1 + T C UCEC 108921143 + 108921123 108921163 41 GAAGAGTATTTTGAAACCTTCATCAATGGAAAAGGTACGGG GAAGAGTATTTTGAAACCTTCACCAATGGAAAAGGTACGGG < 41bp 0.422263592590387 0.715405668926707 0.058212817 0.10991627 prediction 0.430811337853413 Functional Gain - SULT1C2 ENSG00000198203 CDS Human protein_coding chr2:108921143 chr2:108921145 nonsynonymous SNV 0.992 2 23 hm5C_associated_SNPs_121918 0 0 0 0 1 SULT1C2 chr2:108921156 5'GT 108921156 Upstream 12bp
chr19 7976152 7976152 1 + C T rs182111602 7976151 + 7976131 7976171 41 GCAGCCCGAGCGCATTGACCCCCCAGACCCCACCAAGCCGG GCAGCCCGAGCGCATTGACCCTCCAGACCCCACCAAGCCGG < 41bp 0.636194346369869 0.851596550637199 0.1639381 0.94797707 prediction 0.430804408534661 Functional Gain - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7976151 chr19:7976152 synonymous SNV . 0 22 hm5C_associated_SNPs_121919 0 0 1 0 2 MAP2K7 chr19:7976135 3'AG 7976135 Downstream 18bp
chr19 7976152 7976152 1 + C T rs182111602 7976151 + 7976131 7976171 41 GCAGCCCGAGCGCATTGACCCCCCAGACCCCACCAAGCCGG GCAGCCCGAGCGCATTGACCCTCCAGACCCCACCAAGCCGG < 41bp 0.636194346369869 0.851596550637199 0.1639381 0.94797707 prediction 0.430804408534661 Functional Gain - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7976151 chr19:7976152 synonymous SNV . 0 22 hm5C_associated_SNPs_121919 0 0 1 0 2 MAP2K7 chr19:7976215 5'GT 7976215 Upstream 64bp
chr15 78832748 78832748 1 + C A rs540260908 78832747 + 78832727 78832767 41 TCCTCGGCCGTCCCGCTCCCCCCGCCCCAACCCAGCGGTTC TCCTCGGCCGTCCCGCTCCCCACGCCCCAACCCAGCGGTTC < 41bp 0.571273420720722 0.786671541139906 0.1530104 0.12427354 prediction 0.430796240838368 Functional Gain - PSMA4 ENSG00000041357 UTR5 Human protein_coding chr15:78832747 chr15:78832748 . . 0 22 hm5C_associated_SNPs_121921 0 0 0 0 1 PSMA4 chr15:78832805 5'GT 78832805 Upstream 58bp
chr10 94397252 94397252 1 + T G UCEC 94397249 + 94397229 94397269 41 CCTTGGTTGAGTCACAAAAGCAATGTGGAAACCTAACTGAA CCTTGGTTGAGTCACAAAAGCAAGGTGGAAACCTAACTGAA < 41bp 0.339352203811742 0.715396767374297 0.27072462 0.89397043 prediction 0.430793534748593 Functional Gain - KIF11 ENSG00000138160 CDS Human protein_coding chr10:94397249 chr10:94397252 nonsynonymous SNV 0.331 1 24 hm5C_associated_SNPs_121922 0 0 1 0 1 KIF11 chr10:94397302 5'GT 94397302 Upstream 51bp
chr3 10268100 10268100 1 + C T LUSC 10268099 + 10268079 10268119 41 ATCCCTGCAATGGATAACAACCGAAGCCCGGTTTACCTGGT ATCCCTGCAATGGATAACAACTGAAGCCCGGTTTACCTGGT < 41bp 0.455712210370976 0.715394706196905 0.3003945 0.8207536 prediction 0.430789412393809 Functional Gain - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10268099 chr3:10268100 stopgain 0.093 1 22 hm5C_associated_SNPs_121923 0 0 0 0 2 IRAK2 chr3:10268055 3'AG 10268055 Downstream 46bp
chr3 10268100 10268100 1 + C T LUSC 10268099 + 10268079 10268119 41 ATCCCTGCAATGGATAACAACCGAAGCCCGGTTTACCTGGT ATCCCTGCAATGGATAACAACTGAAGCCCGGTTTACCTGGT < 41bp 0.455712210370976 0.715394706196905 0.3003945 0.8207536 prediction 0.430789412393809 Functional Gain - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10268099 chr3:10268100 stopgain 0.093 1 22 hm5C_associated_SNPs_121923 0 0 0 0 2 IRAK2 chr3:10268117 5'GT 10268117 Upstream 18bp
chr12 123738232 123738232 1 + T C GBM 123738230 + 123738210 123738250 41 GCCACGTTCCTTATGAGCACCGTGGGTTTATTTCATTTTCC GCCACGTTCCTTATGAGCACCGCGGGTTTATTTCATTTTCC < 41bp 0.466091807992871 0.715393415212645 0.33947608 0.3134902 prediction 0.430786830425291 Functional Gain - C12orf65 ENSG00000130921 CDS Human antisense chr12:123738230 chr12:123738232 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_121925 0 0 1 0 1 C12orf65 chr12:123738194 3'AG 123738194 Downstream 39bp
chr20 3792885 3792885 1 + C A rs79192803 3792884 + 3792864 3792904 41 TTGGGATGACTACAAGAGGACCGGGGGAGACAGGGAAACAC TTGGGATGACTACAAGAGGACAGGGGGAGACAGGGAAACAC < 41bp 0.473330327128696 0.715389393444047 0.891953 0.89917755 prediction 0.430778786888093 Functional Gain - LINC01730 ENSG00000101224;ENSG00000125843 intergenic Human other chr20:3792884 chr20:3792885 . . 0 22 hm5C_associated_SNPs_121928 0 0 0 0 1 LINC01730 chr20:3792815 3'AG 3792815 Downstream 71bp
chr4 6642336 6642336 1 + C A rs141648061 6642332 + 6642312 6642352 41 GTGCGCGCGCCCGCAGCTCGCCCCCCTGACCGTAAAGAGGC GTGCGCGCGCCCGCAGCTCGCCCCACTGACCGTAAAGAGGC < 41bp 0.37301603113518 0.715383684971632 0.030813932 0.026448071 prediction 0.430767369943264 Functional Gain - MRFAP1 ENSG00000179010 UTR5 Human protein_coding chr4:6642332 chr4:6642336 . . 0 25 hm5C_associated_SNPs_121931 0 0 0 0 1 MRFAP1 chr4:6642435 5'GT 6642435 Upstream 100bp
chr1 111032136 111032136 1 + T A rs815327 111032132 + 111032112 111032152 41 CACCTCCCTGCTGGTGGGGCCTGGTGGCAACATCCTCAACA CACCTCCCTGCTGGTGGGGCCTGGAGGCAACATCCTCAACA < 41bp 0.64265791168644 0.858028813727882 0.24867946 0.21893716 prediction 0.430741804082883 Functional Gain - CYMP;CYMP-AS1 ENSG00000235407;ENSG00000240194 ncRNA_exonic Human other chr1:111032132 chr1:111032136 . . 0 25 hm5C_associated_SNPs_121933 0 0 0 1 1 CYMP;CYMP-AS1 chr1:111032193 5'GT 111032193 Upstream 58bp
chr6 160560827 160560827 1 + C T BRCA 160560826 + 160560806 160560846 41 ATCACCATTGACCGCGTGGGCCGCATCTACCCCATGGCCAT ATCACCATTGACCGCGTGGGCTGCATCTACCCCATGGCCAT < 41bp 0.607898581838364 0.823262692982269 0.016732126 0.016597122 prediction 0.430728222287811 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160560826 chr6:160560827 nonsynonymous SNV 0.010 2 22 hm5C_associated_SNPs_121936 0 0 0 0 1 SLC22A1 chr6:160560899 5'GT 160560899 Upstream 73bp
chr3 122864396 122864396 1 + C T LIHC 122864395 + 122864375 122864415 41 GCCACTGTAAGAAAATGAAGCCGGAGTTTGAGAAGGCAGCA GCCACTGTAAGAAAATGAAGCTGGAGTTTGAGAAGGCAGCA < 41bp 0.585099113907412 0.800460411648737 0.8192046 0.4999164 prediction 0.430722595482649 Functional Gain - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122864395 chr3:122864396 nonsynonymous SNV 0.898 4 22 hm5C_associated_SNPs_121938 0 0 1 1 1 PDIA5 chr3:122864439 5'GT 122864439 Upstream 44bp
chr21 44108042 44108042 1 + C T UCEC 44108041 + 44108021 44108061 41 TTCCAGGAACACGACCATCTCCCTGCTGACCACCGACGACG TTCCAGGAACACGACCATCTCTCTGCTGACCACCGACGACG < 41bp 0.487239499198701 0.715361077216522 0.075128436 0.1552239 prediction 0.430722154433045 Functional Gain - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44108041 chr21:44108042 nonsynonymous SNV 0.985 0 22 hm5C_associated_SNPs_121939 0 0 0 0 2 PDE9A chr21:44108027 3'AG 44108027 Downstream 16bp
chr21 44108042 44108042 1 + C T UCEC 44108041 + 44108021 44108061 41 TTCCAGGAACACGACCATCTCCCTGCTGACCACCGACGACG TTCCAGGAACACGACCATCTCTCTGCTGACCACCGACGACG < 41bp 0.487239499198701 0.715361077216522 0.075128436 0.1552239 prediction 0.430722154433045 Functional Gain - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44108041 chr21:44108042 nonsynonymous SNV 0.985 0 22 hm5C_associated_SNPs_121939 0 0 0 0 2 PDE9A chr21:44108104 5'GT 44108104 Upstream 63bp
chr11 44148443 44148443 1 + T C rs11828047 44148440 + 44148420 44148460 41 AGCGATGTGTTACAAGCTGGCTGTGTCCCGGTTGTCATTGC AGCGATGTGTTACAAGCTGGCTGCGTCCCGGTTGTCATTGC < 41bp 0.535775030901442 0.751131242301837 0.051620215 0.06755537 prediction 0.430712422800789 Functional Gain - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44148440 chr11:44148443 synonymous SNV . 0 24 hm5C_associated_SNPs_121942 1 0 1 0 2 EXT2 chr11:44148366 3'AG 44148366 Downstream 78bp
chr11 44148443 44148443 1 + T C rs11828047 44148440 + 44148420 44148460 41 AGCGATGTGTTACAAGCTGGCTGTGTCCCGGTTGTCATTGC AGCGATGTGTTACAAGCTGGCTGCGTCCCGGTTGTCATTGC < 41bp 0.535775030901442 0.751131242301837 0.051620215 0.06755537 prediction 0.430712422800789 Functional Gain - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44148440 chr11:44148443 synonymous SNV . 0 24 hm5C_associated_SNPs_121942 1 0 1 0 2 EXT2 chr11:44148505 5'GT 44148505 Upstream 63bp
chr14 97009136 97009136 1 + C T UCEC 97009135 + 97009115 97009155 41 GGCTTGGTGGAATCAAAAATCCGAATCCTGGTTGGAAGCTT GGCTTGGTGGAATCAAAAATCTGAATCCTGGTTGGAAGCTT < 41bp 0.524720758132398 0.740075218201852 0.3108027 0.22694266 prediction 0.430708920138908 Functional Gain - PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97009135 chr14:97009136 stopgain 1.000 1 22 hm5C_associated_SNPs_121944 0 0 1 0 1 PAPOLA chr14:97009230 5'GT 97009230 Upstream 95bp
chr4 1808341 1808341 1 + T C PAAD 1808338 + 1808318 1808358 41 CTCCCCGTACCCCGGCATCCCTGTGGAGGAGCTCTTCAAGC CTCCCCGTACCCCGGCATCCCTGCGGAGGAGCTCTTCAAGC < 41bp 0.511245820236175 0.726599248806161 0.19780555 0.29513562 prediction 0.430706857139971 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1808338 chr4:1808341 nonsynonymous SNV 0.986 4 24 hm5C_associated_SNPs_121945 0 0 1 0 2 FGFR3 chr4:1808273 3'AG 1808273 Downstream 69bp
chr4 1808341 1808341 1 + T C PAAD 1808338 + 1808318 1808358 41 CTCCCCGTACCCCGGCATCCCTGTGGAGGAGCTCTTCAAGC CTCCCCGTACCCCGGCATCCCTGCGGAGGAGCTCTTCAAGC < 41bp 0.511245820236175 0.726599248806161 0.19780555 0.29513562 prediction 0.430706857139971 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1808338 chr4:1808341 nonsynonymous SNV 0.986 4 24 hm5C_associated_SNPs_121945 0 0 1 0 2 FGFR3 chr4:1808410 5'GT 1808410 Upstream 70bp
chr16 1398109 1398109 1 + C T STAD 1398108 + 1398088 1398128 41 TGTCCGCAGTTCCGTGCCTGCCGAGGCGTGCCGCCGCCGCG TGTCCGCAGTTCCGTGCCTGCTGAGGCGTGCCGCCGCCGCG < 41bp 0.482203210519203 0.715352450108444 0.7589422 0.39514267 prediction 0.430704900216888 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1398108 chr16:1398109 synonymous SNV . 0 22 hm5C_associated_SNPs_121946 0 0 0 0 1 BAIAP3 chr16:1398097 3'AG 1398097 Downstream 13bp
chr11 113848605 113848605 1 + C A LUSC 113848601 + 113848581 113848621 41 GAGGGACTGGAGGAAGCCAACCACCGTATCCATTGACGTCA GAGGGACTGGAGGAAGCCAACCACAGTATCCATTGACGTCA < 41bp 0.288302360285701 0.715351318632844 0.11350244 0.17291102 prediction 0.430702637265689 Functional Gain - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113848601 chr11:113848605 synonymous SNV . 0 25 hm5C_associated_SNPs_121947 0 0 0 0 1 HTR3A chr11:113848644 5'GT 113848644 Upstream 40bp
chr3 169654173 169654173 1 + C A LUAD 169654169 + 169654149 169654189 41 ATGGAGAAACTTTGCCATTACTCACAGAAGAGCATCTTCGA ATGGAGAAACTTTGCCATTACTCAAAGAAGAGCATCTTCGA < 41bp 0.278058968510041 0.715349448414063 0.16479409 0.6644331 prediction 0.430698896828127 Functional Gain - SAMD7 ENSG00000187033 CDS Human protein_coding chr3:169654169 chr3:169654173 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_121948 0 0 0 0 2 SAMD7 chr3:169654127 3'AG 169654127 Downstream 47bp
chr3 169654173 169654173 1 + C A LUAD 169654169 + 169654149 169654189 41 ATGGAGAAACTTTGCCATTACTCACAGAAGAGCATCTTCGA ATGGAGAAACTTTGCCATTACTCAAAGAAGAGCATCTTCGA < 41bp 0.278058968510041 0.715349448414063 0.16479409 0.6644331 prediction 0.430698896828127 Functional Gain - SAMD7 ENSG00000187033 CDS Human protein_coding chr3:169654169 chr3:169654173 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_121948 0 0 0 0 2 SAMD7 chr3:169654237 5'GT 169654237 Upstream 65bp
chr12 72969157 72969157 1 + C T LUSC 72969156 + 72969136 72969176 41 TTATTAATTGATCAATTAATCCGGAATCATGAGGTACACTC TTATTAATTGATCAATTAATCTGGAATCATGAGGTACACTC < 41bp 0.491179536824195 0.715344247682253 0.86010444 0.4560458 prediction 0.430688495364506 Functional Gain - TRHDE ENSG00000072657 CDS Human protein_coding chr12:72969156 chr12:72969157 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_121949 0 0 0 0 1 TRHDE chr12:72969168 5'GT 72969168 Upstream 12bp
chr20 34572023 34572023 1 + C T SKCM 34572022 + 34572002 34572042 41 GCAGCAGTGCCTTCCTAGATCCCCACCCGAAATTGCTGCAC GCAGCAGTGCCTTCCTAGATCTCCACCCGAAATTGCTGCAC < 41bp 0.585566861642595 0.800910743523888 0.07528958 0.8955107 prediction 0.430687763762586 Functional Gain - CNBD2 ENSG00000149646 CDS Human protein_coding chr20:34572022 chr20:34572023 nonsynonymous SNV 0.833 1 22 hm5C_associated_SNPs_121950 0 0 0 0 1 CNBD2 chr20:34572060 5'GT 34572060 Upstream 38bp
chr8 69129896 69129896 1 + A G LIHC 69129893 + 69129873 69129913 41 GAGCAAGCCATCATTCTGGCCAGAAGCCACGGACTGCCACC GAGCAAGCCATCATTCTGGCCAGGAGCCACGGACTGCCACC < 41bp 0.555365997437407 0.770706102499961 0.29692113 0.49153444 prediction 0.430680210125108 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69129893 chr8:69129896 synonymous SNV . 0 24 hm5C_associated_SNPs_121951 0 0 0 0 2 PREX2 chr8:69129851 3'AG 69129851 Downstream 46bp
chr8 69129896 69129896 1 + A G LIHC 69129893 + 69129873 69129913 41 GAGCAAGCCATCATTCTGGCCAGAAGCCACGGACTGCCACC GAGCAAGCCATCATTCTGGCCAGGAGCCACGGACTGCCACC < 41bp 0.555365997437407 0.770706102499961 0.29692113 0.49153444 prediction 0.430680210125108 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69129893 chr8:69129896 synonymous SNV . 0 24 hm5C_associated_SNPs_121951 0 0 0 0 2 PREX2 chr8:69129953 5'GT 69129953 Upstream 58bp
chr16 69184577 69184577 1 + T C rs147819992 69184574 + 69184554 69184594 41 CATCACACTCATGACGTGCGCACTGTGGCCCACAGCCCAAC CATCACACTCATGACGTGCGCACCGTGGCCCACAGCCCAAC < 41bp 0.520090032677965 0.735419752234078 0.06836331 0.08711642 prediction 0.430659439112225 Functional Gain - UTP4 ENSG00000141076 CDS Human protein_coding chr16:69184574 chr16:69184577 synonymous SNV . 0 24 hm5C_associated_SNPs_121954 0 0 1 0 1 UTP4 chr16:69184611 5'GT 69184611 Upstream 35bp
chr2 178082493 178082493 1 + C T BLCA 178082492 + 178082472 178082512 41 GGGGCTATGGTGGTGGTGGACCAGGATATGGAAACCAAGGT GGGGCTATGGTGGTGGTGGACTAGGATATGGAAACCAAGGT < 41bp 0.594846265090096 0.810172044181576 0.39186925 0.36588752 prediction 0.430651558182959 Functional Gain - HNRNPA3 ENSG00000170144 CDS Human protein_coding chr2:178082492 chr2:178082493 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_121957 0 0 1 0 2 HNRNPA3 chr2:178082433 3'AG 178082433 Downstream 61bp
chr2 178082493 178082493 1 + C T BLCA 178082492 + 178082472 178082512 41 GGGGCTATGGTGGTGGTGGACCAGGATATGGAAACCAAGGT GGGGCTATGGTGGTGGTGGACTAGGATATGGAAACCAAGGT < 41bp 0.594846265090096 0.810172044181576 0.39186925 0.36588752 prediction 0.430651558182959 Functional Gain - HNRNPA3 ENSG00000170144 CDS Human protein_coding chr2:178082492 chr2:178082493 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_121957 0 0 1 0 2 HNRNPA3 chr2:178082573 5'GT 178082573 Upstream 81bp
chr7 107330644 107330644 1 + C T HNSC 107330643 + 107330623 107330663 41 GTGGCCACCACTGCTCTTTCCCGCACGGCCGTCCAGGAGAG GTGGCCACCACTGCTCTTTCCTGCACGGCCGTCCAGGAGAG < 41bp 0.617870478941017 0.833181913848162 0.07965934 0.25665438 prediction 0.430622869814291 Functional Gain - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107330643 chr7:107330644 nonsynonymous SNV 0.815 5 22 hm5C_associated_SNPs_121960 1 0 0 0 2 SLC26A4 chr7:107330569 3'AG 107330569 Downstream 76bp
chr7 107330644 107330644 1 + C T HNSC 107330643 + 107330623 107330663 41 GTGGCCACCACTGCTCTTTCCCGCACGGCCGTCCAGGAGAG GTGGCCACCACTGCTCTTTCCTGCACGGCCGTCCAGGAGAG < 41bp 0.617870478941017 0.833181913848162 0.07965934 0.25665438 prediction 0.430622869814291 Functional Gain - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107330643 chr7:107330644 nonsynonymous SNV 0.815 5 22 hm5C_associated_SNPs_121960 1 0 0 0 2 SLC26A4 chr7:107330682 5'GT 107330682 Upstream 39bp
chr11 5624735 5624735 1 + C A LUSC 5624731 + 5624711 5624751 41 CCTGTGTGCCAGACCAGCTACCAGCCAGGGAACCTGCGGCC CCTGTGTGCCAGACCAGCTACCAGACAGGGAACCTGCGGCC < 41bp 0.302374369063571 0.715306782392192 0.13466701 0.25118452 prediction 0.430613564784383 Functional Gain - TRIM6;TRIM6-TRIM34 ENSG00000121236;ENSG00000258588 CDS Human other chr11:5624731 chr11:5624735 nonsynonymous SNV 0.010 2 25 hm5C_associated_SNPs_121963 0 0 1 0 1 TRIM6;TRIM6-TRIM34 chr11:5624791 5'GT 5624791 Upstream 57bp
chr16 20792105 20792105 1 + T C UCEC 20792102 + 20792082 20792122 41 ATCATGGCCATATTCTTTACCAGTGGAACAAGTGGATATCC ATCATGGCCATATTCTTTACCAGCGGAACAAGTGGATATCC < 41bp 0.515603903956099 0.73090435778192 0.17552963 0.57837033 prediction 0.430600907651643 Functional Gain - ACSM3 ENSG00000005187 CDS Human other chr16:20792102 chr16:20792105 synonymous SNV . 0 24 hm5C_associated_SNPs_121966 0 0 1 0 2 ACSM3;ERI2 chr16:20792036 3'AG 20792036 Downstream 70bp
chr16 20792105 20792105 1 + T C UCEC 20792102 + 20792082 20792122 41 ATCATGGCCATATTCTTTACCAGTGGAACAAGTGGATATCC ATCATGGCCATATTCTTTACCAGCGGAACAAGTGGATATCC < 41bp 0.515603903956099 0.73090435778192 0.17552963 0.57837033 prediction 0.430600907651643 Functional Gain - ACSM3 ENSG00000005187 CDS Human protein_coding chr16:20792102 chr16:20792105 synonymous SNV . 0 24 hm5C_associated_SNPs_121966 0 0 1 0 2 ACSM3 chr16:20792179 5'GT 20792179 Upstream 75bp
chr5 78421957 78421957 1 + C G LUAD 78421953 + 78421933 78421973 41 CATGAAGGAGGGCTTGGAGGCTGCCCGACTGAAAGCTCACC CATGAAGGAGGGCTTGGAGGCTGCGCGACTGAAAGCTCACC < 41bp 0.41425544579665 0.715296292347465 0.1734353 0.18058994 prediction 0.43059258469493 Functional Gain - BHMT ENSG00000145692 CDS Human protein_coding chr5:78421953 chr5:78421957 synonymous SNV . 0 25 hm5C_associated_SNPs_121969 0 0 0 0 2 BHMT chr5:78421869 3'AG 78421869 Downstream 89bp
chr5 78421957 78421957 1 + C G LUAD 78421953 + 78421933 78421973 41 CATGAAGGAGGGCTTGGAGGCTGCCCGACTGAAAGCTCACC CATGAAGGAGGGCTTGGAGGCTGCGCGACTGAAAGCTCACC < 41bp 0.41425544579665 0.715296292347465 0.1734353 0.18058994 prediction 0.43059258469493 Functional Gain - BHMT ENSG00000145692 CDS Human protein_coding chr5:78421953 chr5:78421957 synonymous SNV . 0 25 hm5C_associated_SNPs_121969 0 0 0 0 2 BHMT chr5:78422051 5'GT 78422051 Upstream 95bp
chr11 100845253 100845253 1 + C T UCEC 100845252 + 100845232 100845272 41 CCTCAGTCTCGATCTGGATCCCGAAGGACACGAGCAATCTG CCTCAGTCTCGATCTGGATCCTGAAGGACACGAGCAATCTG < 41bp 0.608025542159056 0.82331954872021 0.8550172 0.29814258 prediction 0.430588013122309 Functional Gain - ARHGAP42 ENSG00000165895 CDS Human protein_coding chr11:100845252 chr11:100845253 stopgain 0.981 0 22 hm5C_associated_SNPs_121970 0 0 0 0 1 ARHGAP42 chr11:100845334 5'GT 100845334 Upstream 82bp
chr12 6887022 6887022 1 + C A UCEC 6887018 + 6886998 6887038 41 GGCCACCTCCTGCTGTTTCTCATCCTTGGTGTCCTTTCTCT GGCCACCTCCTGCTGTTTCTCATCATTGGTGTCCTTTCTCT < 41bp 0.304716975897429 0.715292849117012 0.22063857 0.15463853 prediction 0.430585698234025 Functional Gain - LAG3 ENSG00000089692 CDS Human protein_coding chr12:6887018 chr12:6887022 nonsynonymous SNV 0.011 2 25 hm5C_associated_SNPs_121972 0 0 0 0 2 LAG3 chr12:6886957 3'AG 6886957 Downstream 66bp
chr12 6887022 6887022 1 + C A UCEC 6887018 + 6886998 6887038 41 GGCCACCTCCTGCTGTTTCTCATCCTTGGTGTCCTTTCTCT GGCCACCTCCTGCTGTTTCTCATCATTGGTGTCCTTTCTCT < 41bp 0.304716975897429 0.715292849117012 0.22063857 0.15463853 prediction 0.430585698234025 Functional Gain - LAG3 ENSG00000089692 CDS Human protein_coding chr12:6887018 chr12:6887022 nonsynonymous SNV 0.011 2 25 hm5C_associated_SNPs_121972 0 0 0 0 2 LAG3 chr12:6887087 5'GT 6887087 Upstream 66bp
chr11 64137074 64137074 1 + C T COAD 64137073 + 64137053 64137093 41 GAGGAGGCGGGCGTGGTGCACCGCGACCTCAAGCCGGAGGT GAGGAGGCGGGCGTGGTGCACTGCGACCTCAAGCCGGAGGT < 41bp 0.565242937182479 0.780523042591424 0.40431997 0.3619517 prediction 0.430560210817892 Functional Gain - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137073 chr11:64137074 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_121976 0 0 0 0 1 RPS6KA4 chr11:64137091 5'GT 64137091 Upstream 18bp
chr12 109536308 109536308 1 + C A LUSC 109536307 + 109536287 109536327 41 GCCCTCCTCGCCGCTGAGTGCCGAGCAGTTGGACCGGATCC GCCCTCCTCGCCGCTGAGTGCAGAGCAGTTGGACCGGATCC < 41bp 0.617172382661439 0.832452228404013 0.2449665 0.83472824 prediction 0.430559691485148 Functional Gain - UNG ENSG00000076248 CDS Human protein_coding chr12:109536307 chr12:109536308 synonymous SNV . 0 22 hm5C_associated_SNPs_121977 0 0 1 0 1 UNG chr12:109536237 3'AG 109536237 Downstream 72bp
chr14 76012864 76012864 1 + A G rs2228234 76012861 + 76012841 76012881 41 CGCAAGGAGATCAAGCAGCTCACAGAGGAACTGAAGTACTT CGCAAGGAGATCAAGCAGCTCACGGAGGAACTGAAGTACTT < 41bp 0.541369598351305 0.756644310018018 0.10889521 0.571183 prediction 0.430549423333426 Functional Gain - BATF ENSG00000156127 CDS Human protein_coding chr14:76012861 chr14:76012864 synonymous SNV . 0 24 hm5C_associated_SNPs_121979 0 0 0 0 1 BATF chr14:76012805 3'AG 76012805 Downstream 60bp
chr19 42798196 42798196 1 + C T SKCM 42798195 + 42798175 42798215 41 CAGTCTCTGGCCACCTCACCCCGGGCCATCCTGGGCTCTTA CAGTCTCTGGCCACCTCACCCTGGGCCATCCTGGGCTCTTA < 41bp 0.463177400026644 0.715274559128188 0.9151529 0.90775704 prediction 0.430549118256376 Functional Gain - CIC ENSG00000079432 CDS Human protein_coding chr19:42798195 chr19:42798196 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_121980 0 0 1 0 1 CIC chr19:42798241 5'GT 42798241 Upstream 46bp
chr17 61615788 61615788 1 + C T BLCA 61615787 + 61615767 61615807 41 GCAGGTGCTGAAGGGCTTCCCCGAGTGCCTGCAGGCTGACA GCAGGTGCTGAAGGGCTTCCCTGAGTGCCTGCAGGCTGACA < 41bp 0.572155505392221 0.787429151969631 0.50455195 0.32691497 prediction 0.43054729315482 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61615787 chr17:61615788 synonymous SNV . 0 22 hm5C_associated_SNPs_121981 0 0 0 0 1 KCNH6 chr17:61615771 3'AG 61615771 Downstream 18bp
chr11 74876892 74876892 1 + C T SKCM 74876891 + 74876871 74876911 41 GGCAGCCGGGTGCACCGACCCCGAATGATTGGCTATGGGGC GGCAGCCGGGTGCACCGACCCTGAATGATTGGCTATGGGGC < 41bp 0.456863878005283 0.715268856190145 0.31069517 0.066227615 prediction 0.430537712380289 Functional Gain - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74876891 chr11:74876892 stopgain 0.060 1 22 hm5C_associated_SNPs_121983 0 0 1 0 1 SLCO2B1 chr11:74876832 3'AG 74876832 Downstream 61bp
chr3 138340322 138340322 1 + A G UCEC 138340319 + 138340299 138340339 41 TTGCTTTAAGTGACGGAGTCCACAAGATCGAATTTGAACAT TTGCTTTAAGTGACGGAGTCCACGAGATCGAATTTGAACAT < 41bp 0.550253541767981 0.765509734962147 0.082422376 0.084700376 prediction 0.430512386388331 Functional Gain - FAIM ENSG00000158234 CDS Human protein_coding chr3:138340319 chr3:138340322 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_121985 0 0 1 0 2 FAIM chr3:138340249 3'AG 138340249 Downstream 74bp
chr3 138340322 138340322 1 + A G UCEC 138340319 + 138340299 138340339 41 TTGCTTTAAGTGACGGAGTCCACAAGATCGAATTTGAACAT TTGCTTTAAGTGACGGAGTCCACGAGATCGAATTTGAACAT < 41bp 0.550253541767981 0.765509734962147 0.082422376 0.084700376 prediction 0.430512386388331 Functional Gain - FAIM ENSG00000158234 CDS Human protein_coding chr3:138340319 chr3:138340322 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_121985 0 0 1 0 2 FAIM chr3:138340381 5'GT 138340381 Upstream 60bp
chr11 113853935 113853935 1 + C A STAD 113853931 + 113853911 113853951 41 CAAGCCCCTTCAGGTGGTGACTGCCTGTAGCCTCGACATCT CAAGCCCCTTCAGGTGGTGACTGCATGTAGCCTCGACATCT < 41bp 0.276662639395837 0.715254263917631 0.013472587 0.3053094 prediction 0.430508527835263 Functional Gain - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113853931 chr11:113853935 synonymous SNV . 0 25 hm5C_associated_SNPs_121986 0 0 0 0 1 HTR3A chr11:113854011 5'GT 113854011 Upstream 77bp
chr20 37380883 37380883 1 + C G OV 37380879 + 37380859 37380899 41 CCTGGGCACCTGGCAGCCATCACCCTCAGCCGCATGGAGGA CCTGGGCACCTGGCAGCCATCACCGTCAGCCGCATGGAGGA < 41bp 0.649992689644871 0.86524369639204 0.05227539 0.34683114 prediction 0.430502013494338 Functional Gain - ACTR5 ENSG00000101442 CDS Human protein_coding chr20:37380879 chr20:37380883 nonsynonymous SNV 0.980 5 25 hm5C_associated_SNPs_121988 0 0 0 0 1 ACTR5 chr20:37380943 5'GT 37380943 Upstream 61bp
chr16 31141854 31141854 1 + C A LIHC 31141853 + 31141833 31141873 41 GACCTGGGCAAGCTCAGCTACCGCAGCTACTGGTCCTGGGT GACCTGGGCAAGCTCAGCTACAGCAGCTACTGGTCCTGGGT < 41bp 0.612791968667842 0.828041807492787 0.49392205 0.30481157 prediction 0.43049967764989 Functional Gain - KAT8 ENSG00000103510 CDS Human protein_coding chr16:31141853 chr16:31141854 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_121989 0 0 1 0 2 KAT8 chr16:31141777 3'AG 31141777 Downstream 78bp
chr16 31141854 31141854 1 + C A LIHC 31141853 + 31141833 31141873 41 GACCTGGGCAAGCTCAGCTACCGCAGCTACTGGTCCTGGGT GACCTGGGCAAGCTCAGCTACAGCAGCTACTGGTCCTGGGT < 41bp 0.612791968667842 0.828041807492787 0.49392205 0.30481157 prediction 0.43049967764989 Functional Gain - KAT8 ENSG00000103510 CDS Human protein_coding chr16:31141853 chr16:31141854 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_121989 0 0 1 0 2 KAT8 chr16:31141927 5'GT 31141927 Upstream 74bp
chr8 23114092 23114092 1 + C T STAD 23114091 + 23114071 23114111 41 ACGCAAAGTGGAGTCCTTATCCCAGGAAGCAGAGAGGTAAC ACGCAAAGTGGAGTCCTTATCTCAGGAAGCAGAGAGGTAAC < 41bp 0.619698516805828 0.834942060320722 0.6150366 0.17080995 prediction 0.430487087029788 Functional Gain - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23114091 chr8:23114092 synonymous SNV . 0 22 hm5C_associated_SNPs_121993 0 0 1 0 1 CHMP7 chr8:23114106 5'GT 23114106 Upstream 15bp
chr19 56002446 56002446 1 + C T UCEC 56002445 + 56002425 56002465 41 GGATGCGGGGCTGGTCTGCACCGGTACGTCGGGCTGGGGCC GGATGCGGGGCTGGTCTGCACTGGTACGTCGGGCTGGGGCC < 41bp 0.507927389189934 0.723168538867905 0.5341666 0.39743897 prediction 0.430482299355942 Functional Gain - SSC5D ENSG00000179954 CDS Human protein_coding chr19:56002445 chr19:56002446 synonymous SNV . 0 22 hm5C_associated_SNPs_121994 0 0 0 0 1 SSC5D chr19:56002447 5'GT 56002447 Upstream 2bp
chr8 24256963 24256963 1 + C T SKCM 24256962 + 24256942 24256982 41 AGCTTCAAATTCCTTGTGTTCCCCATCTTCGGTTGCTGTTA AGCTTCAAATTCCTTGTGTTCTCCATCTTCGGTTGCTGTTA < 41bp 0.617496095311466 0.832736983661181 0.17123008 0.9475886 prediction 0.43048177669943 Functional Gain - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24256962 chr8:24256963 synonymous SNV . 0 22 hm5C_associated_SNPs_121995 0 0 0 0 2 ADAMDEC1 chr8:24256906 3'AG 24256906 Downstream 58bp
chr8 24256963 24256963 1 + C T SKCM 24256962 + 24256942 24256982 41 AGCTTCAAATTCCTTGTGTTCCCCATCTTCGGTTGCTGTTA AGCTTCAAATTCCTTGTGTTCTCCATCTTCGGTTGCTGTTA < 41bp 0.617496095311466 0.832736983661181 0.17123008 0.9475886 prediction 0.43048177669943 Functional Gain - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24256962 chr8:24256963 synonymous SNV . 0 22 hm5C_associated_SNPs_121995 0 0 0 0 2 ADAMDEC1 chr8:24256987 5'GT 24256987 Upstream 25bp
chr6 41196733 41196733 1 + C T rs147088240 41196732 + 41196712 41196752 41 GTGTGGAATCTACAACGCTTCCGAAAACATCATCACTGTTC GTGTGGAATCTACAACGCTTCTGAAAACATCATCACTGTTC < 41bp 0.472417220013593 0.715237869266154 0.11072111 0.09672588 prediction 0.430475738532308 Functional Gain - TREML4 ENSG00000188056 CDS Human protein_coding chr6:41196732 chr6:41196733 synonymous SNV . 0 22 hm5C_associated_SNPs_121997 0 0 0 0 1 TREML4 chr6:41196782 5'GT 41196782 Upstream 50bp
chr1 179561886 179561886 1 + C T READ 179561885 + 179561865 179561905 41 GTTGGCAACCATCTACCACTCCGAATCCTTGGGTATCGGTC GTTGGCAACCATCTACCACTCTGAATCCTTGGGTATCGGTC < 41bp 0.466749751895204 0.715237813981402 0.20452994 0.07266259 prediction 0.430475627962803 Functional Gain - TDRD5 ENSG00000162782 CDS Human protein_coding chr1:179561885 chr1:179561886 stopgain 0.986 0 22 hm5C_associated_SNPs_121998 0 0 0 0 1 TDRD5 chr1:179561982 5'GT 179561982 Upstream 97bp
chr10 70949119 70949119 1 + A G COAD 70949116 + 70949096 70949136 41 CACGCAATCCAGAAATACTTCTCAGCAAAGTCTGGAGTGTA CACGCAATCCAGAAATACTTCTCGGCAAAGTCTGGAGTGTA < 41bp 0.479284508205522 0.715237257166868 0.034399748 0.05390781 prediction 0.430474514333737 Functional Gain - SUPV3L1 ENSG00000156502 CDS Human protein_coding chr10:70949116 chr10:70949119 synonymous SNV . 0 24 hm5C_associated_SNPs_122000 0 0 1 0 2 SUPV3L1 chr10:70949023 3'AG 70949023 Downstream 97bp
chr10 70949119 70949119 1 + A G COAD 70949116 + 70949096 70949136 41 CACGCAATCCAGAAATACTTCTCAGCAAAGTCTGGAGTGTA CACGCAATCCAGAAATACTTCTCGGCAAAGTCTGGAGTGTA < 41bp 0.479284508205522 0.715237257166868 0.034399748 0.05390781 prediction 0.430474514333737 Functional Gain - SUPV3L1 ENSG00000156502 CDS Human protein_coding chr10:70949116 chr10:70949119 synonymous SNV . 0 24 hm5C_associated_SNPs_122000 0 0 1 0 2 SUPV3L1 chr10:70949191 5'GT 70949191 Upstream 73bp
chr8 55534686 55534686 1 + C A SKCM 55534682 + 55534662 55534702 41 TCTGGTCTCTTTTAGGTTCCCAGCCTCCAGGCAGTGATCCT TCTGGTCTCTTTTAGGTTCCCAGCATCCAGGCAGTGATCCT < 41bp 0.312332534871989 0.715235574647381 0.24629223 0.19098485 prediction 0.430471149294762 Functional Gain - RP1 ENSG00000104237 CDS Human protein_coding chr8:55534682 chr8:55534686 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_122001 0 0 0 0 1 RP1 chr8:55534677 3'AG 55534677 Downstream 10bp
chr12 56555179 56555179 1 + C T UCEC 56555178 + 56555158 56555198 41 TTCCTTTCCACAGAGCTCGTCCGCATGGTGCTGAATGGCTG TTCCTTTCCACAGAGCTCGTCTGCATGGTGCTGAATGGCTG < 41bp 0.474796351580124 0.715228034213584 0.06407717 0.21411976 prediction 0.430456068427169 Functional Gain - MYL6 ENSG00000092841 CDS Human protein_coding chr12:56555178 chr12:56555179 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_122004 0 0 1 6 1 MYL6 chr12:56555171 3'AG 56555171 Downstream 9bp
chr17 18671986 18671986 1 + C T SKCM 18671985 + 18671965 18672005 41 GCCTGATGGCCTTCAAGCATCCCAAGTAGGTGCCTGTGAAG GCCTGATGGCCTTCAAGCATCTCAAGTAGGTGCCTGTGAAG < 41bp 0.619141733973894 0.834367927986173 0.16417462 0.28459656 prediction 0.430452388024557 Functional Gain - FBXW10 ENSG00000171931 CDS Human protein_coding chr17:18671985 chr17:18671986 nonsynonymous SNV 0.980 3 22 hm5C_associated_SNPs_122006 0 0 0 0 1 FBXW10 chr17:18671989 5'GT 18671989 Upstream 4bp
chr2 191537858 191537858 1 + C G LGG 191537857 + 191537837 191537877 41 GGAGAAAGAGATGAATTATCCCCAAAGAGAATTAAAGTGGA GGAGAAAGAGATGAATTATCCGCAAAGAGAATTAAAGTGGA < 41bp 0.404354479701779 0.715218814090733 0.031190664 0.07643679 prediction 0.430437628181466 Functional Gain - NAB1 ENSG00000138386 CDS Human protein_coding chr2:191537857 chr2:191537858 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_122011 0 0 1 0 2 NAB1 chr2:191537827 3'AG 191537827 Downstream 32bp
chr2 191537858 191537858 1 + C G LGG 191537857 + 191537837 191537877 41 GGAGAAAGAGATGAATTATCCCCAAAGAGAATTAAAGTGGA GGAGAAAGAGATGAATTATCCGCAAAGAGAATTAAAGTGGA < 41bp 0.404354479701779 0.715218814090733 0.031190664 0.07643679 prediction 0.430437628181466 Functional Gain - NAB1 ENSG00000138386 CDS Human protein_coding chr2:191537857 chr2:191537858 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_122011 0 0 1 0 2 NAB1 chr2:191537878 5'GT 191537878 Upstream 21bp
chr19 580426 580426 1 + C T BRCA 580425 + 580405 580445 41 AGTACTCCTGCGTCTTCCTCCCCGAGCCCATGGGCACGGCC AGTACTCCTGCGTCTTCCTCCTCGAGCCCATGGGCACGGCC < 41bp 0.613968928708396 0.829187210195563 0.19395778 0.25070643 prediction 0.430436562974333 Functional Gain - BSG ENSG00000172270 CDS Human protein_coding chr19:580425 chr19:580426 nonsynonymous SNV 0.156 3 22 hm5C_associated_SNPs_122012 0 0 1 0 1 BSG chr19:580461 5'GT 580461 Upstream 36bp
chr17 60464715 60464715 1 + C A SARC 60464714 + 60464694 60464734 41 TCCTCAGGGATAGAGACTTACCAGGATCTCTTCAATGCCAA TCCTCAGGGATAGAGACTTACAAGGATCTCTTCAATGCCAA < 41bp 0.457890051911271 0.715218143920104 0.10967755 0.2628202 prediction 0.430436287840208 Functional Gain - EFCAB3 ENSG00000172421 CDS Human protein_coding chr17:60464714 chr17:60464715 nonsynonymous SNV 0.143 0 22 hm5C_associated_SNPs_122013 0 0 0 0 2 EFCAB3 chr17:60464701 3'AG 60464701 Downstream 15bp
chr17 60464715 60464715 1 + C A SARC 60464714 + 60464694 60464734 41 TCCTCAGGGATAGAGACTTACCAGGATCTCTTCAATGCCAA TCCTCAGGGATAGAGACTTACAAGGATCTCTTCAATGCCAA < 41bp 0.457890051911271 0.715218143920104 0.10967755 0.2628202 prediction 0.430436287840208 Functional Gain - EFCAB3 ENSG00000172421 CDS Human protein_coding chr17:60464714 chr17:60464715 nonsynonymous SNV 0.143 0 22 hm5C_associated_SNPs_122013 0 0 0 0 2 EFCAB3 chr17:60464777 5'GT 60464777 Upstream 63bp
chr13 78191996 78191996 1 + A G UCEC 78191993 + 78191973 78192013 41 CTGCAGTAATCAGAAACAATCAGAGGTATATATAGAAGCAG CTGCAGTAATCAGAAACAATCAGGGGTATATATAGAAGCAG < 41bp 0.510374136652108 0.725585416321561 0.937437 0.94790316 prediction 0.430422559338907 Functional Gain - SCEL ENSG00000136155 CDS Human protein_coding chr13:78191993 chr13:78191996 nonsynonymous SNV 0.984 3 24 hm5C_associated_SNPs_122015 0 0 0 0 2 SCEL chr13:78191938 3'AG 78191938 Downstream 59bp
chr13 78191996 78191996 1 + A G UCEC 78191993 + 78191973 78192013 41 CTGCAGTAATCAGAAACAATCAGAGGTATATATAGAAGCAG CTGCAGTAATCAGAAACAATCAGGGGTATATATAGAAGCAG < 41bp 0.510374136652108 0.725585416321561 0.937437 0.94790316 prediction 0.430422559338907 Functional Gain - SCEL ENSG00000136155 CDS Human protein_coding chr13:78191993 chr13:78191996 nonsynonymous SNV 0.984 3 24 hm5C_associated_SNPs_122015 0 0 0 0 2 SCEL chr13:78191997 5'GT 78191997 Upstream 2bp
chr2 37014334 37014334 1 + C T OV 37014333 + 37014313 37014353 41 AGCATTGGCAAACGGCGATTCCGAATCCAGAAGCAGCTCCT AGCATTGGCAAACGGCGATTCTGAATCCAGAAGCAGCTCCT < 41bp 0.453849231390724 0.715208458598129 0.3036179 0.3641223 prediction 0.430416917196257 Functional Gain - VIT ENSG00000205221 CDS Human protein_coding chr2:37014333 chr2:37014334 stopgain 0.988 0 22 hm5C_associated_SNPs_122018 0 0 0 0 2 VIT chr2:37014272 3'AG 37014272 Downstream 63bp
chr2 37014334 37014334 1 + C T OV 37014333 + 37014313 37014353 41 AGCATTGGCAAACGGCGATTCCGAATCCAGAAGCAGCTCCT AGCATTGGCAAACGGCGATTCTGAATCCAGAAGCAGCTCCT < 41bp 0.453849231390724 0.715208458598129 0.3036179 0.3641223 prediction 0.430416917196257 Functional Gain - VIT ENSG00000205221 CDS Human protein_coding chr2:37014333 chr2:37014334 stopgain 0.988 0 22 hm5C_associated_SNPs_122018 0 0 0 0 2 VIT chr2:37014419 5'GT 37014419 Upstream 86bp
chr5 156816398 156816398 1 + T A HNSC 156816394 + 156816374 156816414 41 CTGTGGAGCGCCATGCAGTTCGTGTACTGCATCCCTGTGGG CTGTGGAGCGCCATGCAGTTCGTGAACTGCATCCCTGTGGG < 41bp 0.388503668348449 0.715204947418868 0.25815672 0.3240955 prediction 0.430409894837736 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816394 chr5:156816398 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_122019 0 0 1 0 1 CYFIP2 chr5:156816435 5'GT 156816435 Upstream 38bp
chr10 134218152 134218152 1 + C A UCEC 134218151 + 134218131 134218171 41 TCCGGCCTCTTTGGCCTACCCCCGTTGGCTCCGCTGCCCCA TCCGGCCTCTTTGGCCTACCCACGTTGGCTCCGCTGCCCCA < 41bp 0.45972725847855 0.715197870600199 0.47629693 0.45143142 prediction 0.430395741200398 Functional Gain - PWWP2B ENSG00000171813 CDS Human protein_coding chr10:134218151 chr10:134218152 nonsynonymous SNV 0.076 0 22 hm5C_associated_SNPs_122022 0 0 1 0 1 PWWP2B chr10:134218130 3'AG 134218130 Downstream 23bp
chr16 90160967 90160967 1 + T A LUAD 90160963 + 90160943 90160983 41 GGTACGTGCCTCGCGCTGTGCTCGTGGATCTGGAGCCGGGC GGTACGTGCCTCGCGCTGTGCTCGAGGATCTGGAGCCGGGC < 41bp 0.670654081299746 0.885842556510944 0.13117391 0.10775781 prediction 0.430376950422395 Functional Gain - PRDM7;FAM157B ENSG00000261812 CDS Human transcribed_unprocessed_pseudogene chr16:90160963 chr16:90160967 unknown . 0 25 hm5C_associated_SNPs_122028 0 0 0 0 1 PRDM7;FAM157B chr16:90160937 3'AG 90160937 Downstream 31bp
chr19 38780920 38780920 1 + C T STAD 38780919 + 38780899 38780939 41 GCCTGCATGCTCCGCTGCTTCCGTAAGTCTGCAGCCCCTCA GCCTGCATGCTCCGCTGCTTCTGTAAGTCTGCAGCCCCTCA < 41bp 0.593530224637554 0.808717343745702 0.61009264 0.26487482 prediction 0.430374238216295 Functional Gain - SPINT2 ENSG00000167642;ENSG00000267748 CDS Human other chr19:38780919 chr19:38780920 nonsynonymous SNV 0.299 2 22 hm5C_associated_SNPs_122029 0 0 1 0 1 SPINT2 chr19:38780920 5'GT 38780920 Upstream 1bp
chr20 58330339 58330339 1 + C T rs2277759 58330338 + 58330318 58330358 41 TGACTTCAGAAGATGCCCAGCCCGGAAGCCCCTTGGCCACT TGACTTCAGAAGATGCCCAGCTCGGAAGCCCCTTGGCCACT < 41bp 0.455568576348313 0.715176425303196 0.17261013 0.10812265 prediction 0.430352850606392 Functional Gain - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58330338 chr20:58330339 nonsynonymous SNV 0.030 0 22 hm5C_associated_SNPs_122031 0 0 0 0 1 PHACTR3 chr20:58330419 5'GT 58330419 Upstream 81bp
chr7 141763342 141763342 1 + C T SKCM 141763341 + 141763321 141763361 41 TCGTGAATGGGGCAGTTTCTCCAGGCTGCAGGGACGCCTCT TCGTGAATGGGGCAGTTTCTCTAGGCTGCAGGGACGCCTCT < 41bp 0.561668801063525 0.776836230041222 0.94149894 0.92531455 prediction 0.430334857955394 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141763341 chr7:141763342 nonsynonymous SNV 0.882 1 22 hm5C_associated_SNPs_122037 0 0 0 0 2 MGAM chr7:141763299 3'AG 141763299 Downstream 44bp
chr7 141763342 141763342 1 + C T SKCM 141763341 + 141763321 141763361 41 TCGTGAATGGGGCAGTTTCTCCAGGCTGCAGGGACGCCTCT TCGTGAATGGGGCAGTTTCTCTAGGCTGCAGGGACGCCTCT < 41bp 0.561668801063525 0.776836230041222 0.94149894 0.92531455 prediction 0.430334857955394 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141763341 chr7:141763342 nonsynonymous SNV 0.882 1 22 hm5C_associated_SNPs_122037 0 0 0 0 2 MGAM chr7:141763386 5'GT 141763386 Upstream 45bp
chr1 17292323 17292323 1 + C T UCEC 17292322 + 17292302 17292342 41 CAGCCTCTCCAGACCTGGACCCGGAGGCAGTGCGCGGGGCC CAGCCTCTCCAGACCTGGACCTGGAGGCAGTGCGCGGGGCC < 41bp 0.461282202328851 0.715165194097284 0.94884497 0.6066519 prediction 0.430330388194569 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17292322 chr1:17292323 nonsynonymous SNV 0.727 1 22 hm5C_associated_SNPs_122039 0 0 0 0 1 CROCC chr1:17292387 5'GT 17292387 Upstream 65bp
chr17 30648009 30648009 1 + C T COAD 30648008 + 30647988 30648028 41 TTTGGGCGGGCCGTGTGGCTCCGCTTCCACCCGTCGGCCTA TTTGGGCGGGCCGTGTGGCTCTGCTTCCACCCGTCGGCCTA < 41bp 0.584624740449295 0.799781065737757 0.023845702 0.031543523 prediction 0.430312650576924 Functional Gain - RHBDL3 ENSG00000141314 CDS Human protein_coding chr17:30648008 chr17:30648009 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_122040 0 0 0 0 1 RHBDL3 chr17:30647977 3'AG 30647977 Downstream 33bp
chr5 76249516 76249516 1 + C G LUAD 76249512 + 76249492 76249532 41 GGGGAGCAGCCGTACCGCCGCGCTCTGCGTGAGTCGAGGCT GGGGAGCAGCCGTACCGCCGCGCTGTGCGTGAGTCGAGGCT < 41bp 0.423626496197737 0.715153912863932 0.3722843 0.4114594 prediction 0.430307825727863 Functional Gain - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76249512 chr5:76249516 nonsynonymous SNV 0.979 4 25 hm5C_associated_SNPs_122041 0 0 0 0 2 CRHBP chr5:76249426 3'AG 76249426 Downstream 91bp
chr5 76249516 76249516 1 + C G LUAD 76249512 + 76249492 76249532 41 GGGGAGCAGCCGTACCGCCGCGCTCTGCGTGAGTCGAGGCT GGGGAGCAGCCGTACCGCCGCGCTGTGCGTGAGTCGAGGCT < 41bp 0.423626496197737 0.715153912863932 0.3722843 0.4114594 prediction 0.430307825727863 Functional Gain - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76249512 chr5:76249516 nonsynonymous SNV 0.979 4 25 hm5C_associated_SNPs_122041 0 0 0 0 2 CRHBP chr5:76249519 5'GT 76249519 Upstream 4bp
chr2 131595270 131595270 1 + C A rs537408620 131595269 + 131595249 131595289 41 CAGGTTGCCAAGCCCGACCTCCCCAGGTGAGCCAGCGGGAG CAGGTTGCCAAGCCCGACCTCACCAGGTGAGCCAGCGGGAG < 41bp 0.538603885219721 0.753757379503701 0.16671371 0.24674392 prediction 0.430306988567959 Functional Gain - AMER3;ARHGEF4 ENSG00000136002 UTR5 Human protein_coding chr2:131595269 chr2:131595270 . . 0 22 hm5C_associated_SNPs_122042 0 0 0 0 1 AMER3;ARHGEF4 chr2:131595274 5'GT 131595274 Upstream 5bp
chr14 60581501 60581501 1 + T G SKCM 60581498 + 60581478 60581518 41 ATTTTTACCCTTTCTGTGGGCACTTGGGACTCTGCCCCCAC ATTTTTACCCTTTCTGTGGGCACGTGGGACTCTGCCCCCAC < 41bp 0.319509726151863 0.715151562915144 0.380431 0.838373 prediction 0.430303125830289 Functional Gain - PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60581498 chr14:60581501 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_122044 0 0 1 0 2 PCNX4 chr14:60581418 3'AG 60581418 Downstream 84bp
chr14 60581501 60581501 1 + T G SKCM 60581498 + 60581478 60581518 41 ATTTTTACCCTTTCTGTGGGCACTTGGGACTCTGCCCCCAC ATTTTTACCCTTTCTGTGGGCACGTGGGACTCTGCCCCCAC < 41bp 0.319509726151863 0.715151562915144 0.380431 0.838373 prediction 0.430303125830289 Functional Gain - PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60581498 chr14:60581501 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_122044 0 0 1 0 2 PCNX4 chr14:60581597 5'GT 60581597 Upstream 97bp
chr13 53035209 53035209 1 + T C rs539183420 53035207 + 53035187 53035227 41 TTTCAGGCTGATAAAGAAAACATGAAGAGACCTGCAGAGAG TTTCAGGCTGATAAAGAAAACACGAAGAGACCTGCAGAGAG < 41bp 0.623823670469016 0.83896972942301 0.36577356 0.2957549 prediction 0.430292117907989 Functional Gain - CKAP2 ENSG00000136108 CDS Human protein_coding chr13:53035207 chr13:53035209 nonsynonymous SNV 0.011 0 23 hm5C_associated_SNPs_122046 0 0 1 0 1 CKAP2 chr13:53035193 3'AG 53035193 Downstream 17bp
chr16 70166131 70166131 1 + C G CESC 70166130 + 70166110 70166150 41 TCTGGGGGCTTTGAGAAGAACCCGAAACCAATTTTCACTGA TCTGGGGGCTTTGAGAAGAACGCGAAACCAATTTTCACTGA < 41bp 0.669748911247812 0.884884909011809 0.2906257 0.5422163 prediction 0.430271995527994 Functional Gain - PDPR ENSG00000090857 CDS Human protein_coding chr16:70166130 chr16:70166131 nonsynonymous SNV 0.981 2 22 hm5C_associated_SNPs_122048 0 0 1 0 2 PDPR chr16:70166054 3'AG 70166054 Downstream 78bp
chr16 70166131 70166131 1 + C G CESC 70166130 + 70166110 70166150 41 TCTGGGGGCTTTGAGAAGAACCCGAAACCAATTTTCACTGA TCTGGGGGCTTTGAGAAGAACGCGAAACCAATTTTCACTGA < 41bp 0.669748911247812 0.884884909011809 0.2906257 0.5422163 prediction 0.430271995527994 Functional Gain - PDPR ENSG00000090857 CDS Human protein_coding chr16:70166130 chr16:70166131 nonsynonymous SNV 0.981 2 22 hm5C_associated_SNPs_122048 0 0 1 0 2 PDPR chr16:70166203 5'GT 70166203 Upstream 73bp
chr17 59560355 59560355 1 + C A UCEC 59560351 + 59560331 59560371 41 TCACTATTTCCGTTCCCCCCCTCCCTACGACCAGCAAATGC TCACTATTTCCGTTCCCCCCCTCCATACGACCAGCAAATGC < 41bp 0.276123511088112 0.715135216072204 0.2861169 0.95536447 prediction 0.430270432144407 Functional Gain - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59560351 chr17:59560355 synonymous SNV . 0 25 hm5C_associated_SNPs_122049 0 0 0 0 2 TBX4 chr17:59560258 3'AG 59560258 Downstream 98bp
chr17 59560355 59560355 1 + C A UCEC 59560351 + 59560331 59560371 41 TCACTATTTCCGTTCCCCCCCTCCCTACGACCAGCAAATGC TCACTATTTCCGTTCCCCCCCTCCATACGACCAGCAAATGC < 41bp 0.276123511088112 0.715135216072204 0.2861169 0.95536447 prediction 0.430270432144407 Functional Gain - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59560351 chr17:59560355 synonymous SNV . 0 25 hm5C_associated_SNPs_122049 0 0 0 0 2 TBX4 chr17:59560261 3'AG 59560261 Downstream 95bp
chr9 19336301 19336301 1 + C T UCEC 19336300 + 19336280 19336320 41 AGCCCGTGGCCTAGCAGTACCCGCAGTGGTATTTTCTTATG AGCCCGTGGCCTAGCAGTACCTGCAGTGGTATTTTCTTATG < 41bp 0.612269765642533 0.827401216362971 0.20294854 0.3221386 prediction 0.430262901440875 Functional Gain - DENND4C ENSG00000137145 CDS Human protein_coding chr9:19336300 chr9:19336301 nonsynonymous SNV 0.985 3 22 hm5C_associated_SNPs_122050 0 0 1 0 1 DENND4C chr9:19336268 3'AG 19336268 Downstream 34bp
chr17 17965200 17965200 1 + T C LIHC 17965197 + 17965177 17965217 41 GATCACACGATCAAAGACATCAGTGGTGCTTCTTTTGCCGG GATCACACGATCAAAGACATCAGCGGTGCTTCTTTTGCCGG < 41bp 0.501977506755024 0.717108489854308 0.31801343 0.42523107 prediction 0.430261966198569 Functional Gain - GID4 ENSG00000141034 CDS Human protein_coding chr17:17965197 chr17:17965200 synonymous SNV . 0 24 hm5C_associated_SNPs_122052 0 0 1 0 2 GID4 chr17:17965159 3'AG 17965159 Downstream 42bp
chr17 17965200 17965200 1 + T C LIHC 17965197 + 17965177 17965217 41 GATCACACGATCAAAGACATCAGTGGTGCTTCTTTTGCCGG GATCACACGATCAAAGACATCAGCGGTGCTTCTTTTGCCGG < 41bp 0.501977506755024 0.717108489854308 0.31801343 0.42523107 prediction 0.430261966198569 Functional Gain - GID4 ENSG00000141034 CDS Human protein_coding chr17:17965197 chr17:17965200 synonymous SNV . 0 24 hm5C_associated_SNPs_122052 0 0 1 0 2 GID4 chr17:17965289 5'GT 17965289 Upstream 90bp
chr14 57052567 57052567 1 + T C rs200822110 57052565 + 57052545 57052585 41 TTTGGTTCAATTGCCTACCGCGTCAATCTTCTCTGTGGCTT TTTGGTTCAATTGCCTACCGCGCCAATCTTCTCTGTGGCTT < 41bp 0.427160368713536 0.715130719877246 0.13993701 0.09949064 prediction 0.430261439754491 Functional Gain - TMEM260 ENSG00000070269 CDS Human protein_coding chr14:57052565 chr14:57052567 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_122053 0 0 1 0 2 TMEM260 chr14:57052479 3'AG 57052479 Downstream 89bp
chr14 57052567 57052567 1 + T C rs200822110 57052565 + 57052545 57052585 41 TTTGGTTCAATTGCCTACCGCGTCAATCTTCTCTGTGGCTT TTTGGTTCAATTGCCTACCGCGCCAATCTTCTCTGTGGCTT < 41bp 0.427160368713536 0.715130719877246 0.13993701 0.09949064 prediction 0.430261439754491 Functional Gain - TMEM260 ENSG00000070269 CDS Human protein_coding chr14:57052565 chr14:57052567 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_122053 0 0 1 0 2 TMEM260 chr14:57052630 5'GT 57052630 Upstream 64bp
chr7 2645525 2645525 1 + C T LUAD 2645524 + 2645504 2645544 41 CCCCAGAGCTCTCCTGTGCCCCGCGTTCCGAGCCCCATCGC CCCCAGAGCTCTCCTGTGCCCTGCGTTCCGAGCCCCATCGC < 41bp 0.571853306491156 0.786978087187396 0.08673325 0.104257554 prediction 0.430249561392481 Functional Gain - IQCE ENSG00000106012 CDS Human protein_coding chr7:2645524 chr7:2645525 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_122057 0 0 0 0 1 IQCE chr7:2645510 3'AG 2645510 Downstream 16bp
chr2 99182207 99182207 1 + C A CESC 99182203 + 99182183 99182223 41 ACTTCCAGCGCCTCCGCAGACATGCTGCCCGTCATCACAGG ACTTCCAGCGCCTCCGCAGACATGATGCCCGTCATCACAGG < 41bp 0.297193387117102 0.715122325424687 0.027740955 0.07582453 prediction 0.430244650849374 Functional Gain - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99182203 chr2:99182207 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_122058 0 0 1 0 2 INPP4A chr2:99182180 3'AG 99182180 Downstream 28bp
chr2 99182207 99182207 1 + C A CESC 99182203 + 99182183 99182223 41 ACTTCCAGCGCCTCCGCAGACATGCTGCCCGTCATCACAGG ACTTCCAGCGCCTCCGCAGACATGATGCCCGTCATCACAGG < 41bp 0.297193387117102 0.715122325424687 0.027740955 0.07582453 prediction 0.430244650849374 Functional Gain - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99182203 chr2:99182207 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_122058 0 0 1 0 2 INPP4A chr2:99182229 5'GT 99182229 Upstream 23bp
chr19 34663587 34663587 1 + C A STAD 34663583 + 34663563 34663603 41 CCTTACATCGGCAGCAAGATCAGCCTCATCTCCAAGGCGGA CCTTACATCGGCAGCAAGATCAGCATCATCTCCAAGGCGGA < 41bp 0.713435655894682 0.928553861880613 0.92616534 0.8831371 prediction 0.430236411971862 Functional Gain - LSM14A ENSG00000257103 CDS Human protein_coding chr19:34663583 chr19:34663587 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_122061 0 0 1 0 1 LSM14A chr19:34663668 5'GT 34663668 Upstream 82bp
chr2 206590675 206590675 1 + C T PAAD 206590674 + 206590654 206590694 41 CCTCTGGGCATGGAGTCTGGCCGGATTGCTAATGAACAGAT CCTCTGGGCATGGAGTCTGGCTGGATTGCTAATGAACAGAT < 41bp 0.611947225096059 0.827065198265412 0.2061682 0.24909753 prediction 0.430235946338706 Functional Gain - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206590674 chr2:206590675 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_122062 0 0 1 0 1 NRP2 chr2:206590637 3'AG 206590637 Downstream 39bp
chr17 47295175 47295175 1 + C T CESC 47295174 + 47295154 47295194 41 CACTGTCCAGCGGCTGCCCCCCGGCCAGAAGGTCATCGCCC CACTGTCCAGCGGCTGCCCCCTGGCCAGAAGGTCATCGCCC < 41bp 0.471062557800908 0.715109961399177 0.29723394 0.11827153 prediction 0.430219922798355 Functional Gain - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47295174 chr17:47295175 synonymous SNV . 0 22 hm5C_associated_SNPs_122065 0 0 0 0 1 ABI3 chr17:47295101 3'AG 47295101 Downstream 75bp
chr14 105715779 105715779 1 + C T LIHC 105715778 + 105715758 105715798 41 TCAAATCTGAAATTCACATTCCAGACGTGGAGCCCGCAGCC TCAAATCTGAAATTCACATTCTAGACGTGGAGCCCGCAGCC < 41bp 0.604402278464854 0.819499865832251 0.36829323 0.3030815 prediction 0.430195174734796 Functional Gain - BTBD6 ENSG00000184887 CDS Human protein_coding chr14:105715778 chr14:105715779 nonsynonymous SNV 0.407 4 22 hm5C_associated_SNPs_122067 0 0 1 0 2 BTBD6 chr14:105715697 3'AG 105715697 Downstream 83bp
chr14 105715779 105715779 1 + C T LIHC 105715778 + 105715758 105715798 41 TCAAATCTGAAATTCACATTCCAGACGTGGAGCCCGCAGCC TCAAATCTGAAATTCACATTCTAGACGTGGAGCCCGCAGCC < 41bp 0.604402278464854 0.819499865832251 0.36829323 0.3030815 prediction 0.430195174734796 Functional Gain - BTBD6 ENSG00000184887 CDS Human protein_coding chr14:105715778 chr14:105715779 nonsynonymous SNV 0.407 4 22 hm5C_associated_SNPs_122067 0 0 1 0 2 BTBD6 chr14:105715815 5'GT 105715815 Upstream 37bp
chr19 14153355 14153355 1 + C T CESC 14153354 + 14153334 14153374 41 TACAAAGTGTATGGCCGCTGCCGGATGGAGAAAGAAGAGGA TACAAAGTGTATGGCCGCTGCTGGATGGAGAAAGAAGAGGA < 41bp 0.619690530341491 0.834787407059418 0.5851213 0.29197544 prediction 0.430193753435856 Functional Gain - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14153354 chr19:14153355 nonsynonymous SNV 0.036 2 22 hm5C_associated_SNPs_122068 0 0 1 0 2 IL27RA chr19:14153265 3'AG 14153265 Downstream 91bp
chr19 14153355 14153355 1 + C T CESC 14153354 + 14153334 14153374 41 TACAAAGTGTATGGCCGCTGCCGGATGGAGAAAGAAGAGGA TACAAAGTGTATGGCCGCTGCTGGATGGAGAAAGAAGAGGA < 41bp 0.619690530341491 0.834787407059418 0.5851213 0.29197544 prediction 0.430193753435856 Functional Gain - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14153354 chr19:14153355 nonsynonymous SNV 0.036 2 22 hm5C_associated_SNPs_122068 0 0 1 0 2 IL27RA chr19:14153424 5'GT 14153424 Upstream 70bp
chrX 152034435 152034435 1 + C G CESC 152034434 + 152034414 152034454 41 CGCCCTCATGGCATTTTCGGCCCAAGGGACCCGCAGTTGGT CGCCCTCATGGCATTTTCGGCGCAAGGGACCCGCAGTTGGT < 41bp 0.378723168066469 0.715085918319888 0.19508827 0.45041224 prediction 0.430171836639775 Functional Gain - NSDHL ENSG00000147383 CDS Human protein_coding chrX:152034434 chrX:152034435 nonsynonymous SNV 0.989 5 22 hm5C_associated_SNPs_122071 0 0 1 0 2 NSDHL chrX:152034363 3'AG 152034363 Downstream 73bp
chrX 152034435 152034435 1 + C G CESC 152034434 + 152034414 152034454 41 CGCCCTCATGGCATTTTCGGCCCAAGGGACCCGCAGTTGGT CGCCCTCATGGCATTTTCGGCGCAAGGGACCCGCAGTTGGT < 41bp 0.378723168066469 0.715085918319888 0.19508827 0.45041224 prediction 0.430171836639775 Functional Gain - NSDHL ENSG00000147383 CDS Human protein_coding chrX:152034434 chrX:152034435 nonsynonymous SNV 0.989 5 22 hm5C_associated_SNPs_122071 0 0 1 0 2 NSDHL chrX:152034505 5'GT 152034505 Upstream 71bp
chr17 41932638 41932638 1 + C T COAD 41932637 + 41932617 41932657 41 GCTGCTGAGCCTTCTGTCAGCCGCAGGCCTGATCGCCTTCT GCTGCTGAGCCTTCTGTCAGCTGCAGGCCTGATCGCCTTCT < 41bp 0.602852251693575 0.817936001822877 0.39095134 0.33352694 prediction 0.430167500258605 Functional Gain - CD300LG ENSG00000161649 CDS Human protein_coding chr17:41932637 chr17:41932638 synonymous SNV . 0 22 hm5C_associated_SNPs_122072 0 0 0 0 1 CD300LG chr17:41932687 5'GT 41932687 Upstream 50bp
chr7 105621509 105621509 1 + C A LUSC 105621505 + 105621485 105621525 41 GAAGGATGAGGTTGGTGTCACAGACCTGCAAGTCCTGACTG GAAGGATGAGGTTGGTGTCACAGAACTGCAAGTCCTGACTG < 41bp 0.305238668816009 0.715068095787778 0.40621507 0.5196139 prediction 0.430136191575556 Functional Gain - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105621505 chr7:105621509 nonsynonymous SNV 0.714 3 25 hm5C_associated_SNPs_122078 0 0 0 0 2 CDHR3 chr7:105621414 3'AG 105621414 Downstream 96bp
chr7 105621509 105621509 1 + C A LUSC 105621505 + 105621485 105621525 41 GAAGGATGAGGTTGGTGTCACAGACCTGCAAGTCCTGACTG GAAGGATGAGGTTGGTGTCACAGAACTGCAAGTCCTGACTG < 41bp 0.305238668816009 0.715068095787778 0.40621507 0.5196139 prediction 0.430136191575556 Functional Gain - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105621505 chr7:105621509 nonsynonymous SNV 0.714 3 25 hm5C_associated_SNPs_122078 0 0 0 0 2 CDHR3 chr7:105621579 5'GT 105621579 Upstream 71bp
chr16 16326656 16326656 1 + T A rs545946379 16326652 + 16326632 16326672 41 GTGGGCTGCGGTGGCTTCGTCAAGTCGGACGTGGAGATCAA GTGGGCTGCGGTGGCTTCGTCAAGACGGACGTGGAGATCAA < 41bp 0.673184369888055 0.888248598696591 0.71040833 0.75482476 prediction 0.430128457617071 Functional Gain - NOMO3 ENSG00000103226 CDS Human protein_coding chr16:16326652 chr16:16326656 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_122082 0 0 0 0 1 NOMO3 chr16:16326688 5'GT 16326688 Upstream 33bp
chrX 2715398 2715398 1 + C A UCEC 2715394 + 2715374 2715414 41 AGTTATGGCAACTCCGACAACACGCACGGTACCCCTACATC AGTTATGGCAACTCCGACAACACGAACGGTACCCCTACATC < 41bp 0.72599498050409 0.941056470321215 0.015302122 0.03403783 prediction 0.430122979634249 Functional Gain - XG ENSG00000124343 CDS Human protein_coding chrX:2715394 chrX:2715398 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_122084 0 0 0 0 2 XG chrX:2715351 3'AG 2715351 Downstream 48bp
chrX 2715398 2715398 1 + C A UCEC 2715394 + 2715374 2715414 41 AGTTATGGCAACTCCGACAACACGCACGGTACCCCTACATC AGTTATGGCAACTCCGACAACACGAACGGTACCCCTACATC < 41bp 0.72599498050409 0.941056470321215 0.015302122 0.03403783 prediction 0.430122979634249 Functional Gain - XG ENSG00000124343 CDS Human protein_coding chrX:2715394 chrX:2715398 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_122084 0 0 0 0 2 XG chrX:2715401 5'GT 2715401 Upstream 4bp
chr1 113232719 113232719 1 + C T PAAD 113232718 + 113232698 113232738 41 GAGGAAGGAGAGAGACCTGACCGGTAACTCCTCCCTCCAAC GAGGAAGGAGAGAGACCTGACTGGTAACTCCTCCCTCCAAC < 41bp 0.475116500892435 0.715055928327406 0.2017858 0.10528955 prediction 0.430111856654813 Functional Gain - MOV10 ENSG00000155363 CDS Human protein_coding chr1:113232718 chr1:113232719 nonsynonymous SNV 0.991 2 22 hm5C_associated_SNPs_122085 0 0 1 0 1 MOV10 chr1:113232720 5'GT 113232720 Upstream 2bp
chr16 3194616 3194616 1 + A G rs2550392 3194613 + 3194593 3194633 41 CCGGGCCCTGCGGGGCTGCCCCAAAGTCTTCCTGCTGCTCT CCGGGCCCTGCGGGGCTGCCCCAGAGTCTTCCTGCTGCTCT < 41bp 0.551277968044004 0.766332776914353 0.57316977 0.9047401 prediction 0.430109617740698 Functional Gain - CASP16P ENSG00000228146 UTR5 Human transcribed_unprocessed_pseudogene chr16:3194613 chr16:3194616 . . 0 24 hm5C_associated_SNPs_122086 0 0 0 0 1 CASP16P chr16:3194648 5'GT 3194648 Upstream 33bp
chr1 65113663 65113663 1 + C T UCEC 65113662 + 65113642 65113682 41 TTCTACACAAACCTTCCCAACCGGATGATTGATGAAGCCGT TTCTACACAAACCTTCCCAACTGGATGATTGATGAAGCCGT < 41bp 0.448882206502907 0.715052379793429 0.20974347 0.30272394 prediction 0.430104759586857 Functional Gain - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65113662 chr1:65113663 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_122087 0 0 0 0 1 CACHD1 chr1:65113717 5'GT 65113717 Upstream 55bp
chr1 155011920 155011920 1 + T G LUAD 155011916 + 155011896 155011936 41 TGGGGGACCTCCCCTCACATCCGCTGTGCCAGCCTCCTACT TGGGGGACCTCCCCTCACATCCGCGGTGCCAGCCTCCTACT < 41bp 0.489230313568103 0.715049760236269 0.24747914 0.6031348 prediction 0.430099520472537 Functional Gain - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155011916 chr1:155011920 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_122090 0 0 0 0 2 DCST1 chr1:155011879 3'AG 155011879 Downstream 42bp
chr1 155011920 155011920 1 + T G LUAD 155011916 + 155011896 155011936 41 TGGGGGACCTCCCCTCACATCCGCTGTGCCAGCCTCCTACT TGGGGGACCTCCCCTCACATCCGCGGTGCCAGCCTCCTACT < 41bp 0.489230313568103 0.715049760236269 0.24747914 0.6031348 prediction 0.430099520472537 Functional Gain - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155011916 chr1:155011920 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_122090 0 0 0 0 2 DCST1 chr1:155012007 5'GT 155012007 Upstream 88bp
chr7 99996934 99996934 1 + A G SKCM 99996931 + 99996911 99996951 41 CAGGGAACCCTTCCAAAACACAGAGGAGCCATATGAGAATA CAGGGAACCCTTCCAAAACACAGGGGAGCCATATGAGAATA < 41bp 0.581640408498086 0.796686835912501 0.37964076 0.86912346 prediction 0.430092854828832 Functional Gain - PILRA ENSG00000085514 CDS Human protein_coding chr7:99996931 chr7:99996934 nonsynonymous SNV 0.032 2 24 hm5C_associated_SNPs_122091 0 0 0 0 2 PILRA chr7:99996914 3'AG 99996914 Downstream 21bp
chr7 99996934 99996934 1 + A G SKCM 99996931 + 99996911 99996951 41 CAGGGAACCCTTCCAAAACACAGAGGAGCCATATGAGAATA CAGGGAACCCTTCCAAAACACAGGGGAGCCATATGAGAATA < 41bp 0.581640408498086 0.796686835912501 0.37964076 0.86912346 prediction 0.430092854828832 Functional Gain - PILRA ENSG00000085514 CDS Human protein_coding chr7:99996931 chr7:99996934 nonsynonymous SNV 0.032 2 24 hm5C_associated_SNPs_122091 0 0 0 0 2 PILRA chr7:99996963 5'GT 99996963 Upstream 30bp
chr11 7663610 7663610 1 + C T STAD 7663609 + 7663589 7663629 41 ACGAGGTGGGCTCCGGGCAACCGCAGGGCCAAGACTCTCTA ACGAGGTGGGCTCCGGGCAACTGCAGGGCCAAGACTCTCTA < 41bp 0.627141904697662 0.84218707543289 0.20927659 0.64977 prediction 0.430090341470455 Functional Gain - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7663609 chr11:7663610 synonymous SNV . 0 22 hm5C_associated_SNPs_122095 0 0 0 0 1 PPFIBP2 chr11:7663529 3'AG 7663529 Downstream 82bp
chr11 59807995 59807995 1 + T C HNSC 59807993 + 59807973 59808013 41 GGACCGGTGCTGAGAACCTCCATGGTAAATAACAAGTTTTA GGACCGGTGCTGAGAACCTCCACGGTAAATAACAAGTTTTA < 41bp 0.560711128422647 0.77575213723019 0.35841396 0.5940054 prediction 0.430082017615087 Functional Gain - OOSP2 ENSG00000149507 CDS Human protein_coding chr11:59807993 chr11:59807995 synonymous SNV . 0 23 hm5C_associated_SNPs_122096 0 0 0 0 1 OOSP2 chr11:59807996 5'GT 59807996 Upstream 2bp
chr1 15792529 15792529 1 + C T UCEC 15792528 + 15792508 15792548 41 CCTGATGTCCTGCAGCAGGGCCGGTTGCTGGTTGTGGACTA CCTGATGTCCTGCAGCAGGGCTGGTTGCTGGTTGTGGACTA < 41bp 0.484502454902503 0.715036778810656 0.355484 0.21369585 prediction 0.430073557621313 Functional Gain - CELA2A ENSG00000142615 CDS Human protein_coding chr1:15792528 chr1:15792529 nonsynonymous SNV 0.494 3 22 hm5C_associated_SNPs_122099 0 0 0 0 1 CELA2A chr1:15792494 3'AG 15792494 Downstream 36bp
chr2 71206315 71206315 1 + C A LUAD 71206314 + 71206294 71206334 41 CCTGCCTCGCTCACCCCGCCCCGCGCTGACCCCAGCCCCAG CCTGCCTCGCTCACCCCGCCCAGCGCTGACCCCAGCCCCAG < 41bp 0.61399013961951 0.829013048838882 0.18804985 0.34567344 prediction 0.430045818438743 Functional Gain - ANKRD53 ENSG00000144031 CDS Human protein_coding chr2:71206314 chr2:71206315 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_122105 0 0 0 0 1 ANKRD53 chr2:71206227 3'AG 71206227 Downstream 89bp
chr2 178977544 178977544 1 + C T SKCM 178977543 + 178977523 178977563 41 GAGGAGATGCATGGCCAGTGCCTCGGCCCCAACGACACCAA GAGGAGATGCATGGCCAGTGCTTCGGCCCCAACGACACCAA < 41bp 0.561080326277134 0.776091176366461 0.22263438 0.23729181 prediction 0.430021700178655 Functional Gain - RBM45 ENSG00000155636 CDS Human protein_coding chr2:178977543 chr2:178977544 nonsynonymous SNV 0.988 5 22 hm5C_associated_SNPs_122109 0 0 1 0 1 RBM45 chr2:178977573 5'GT 178977573 Upstream 30bp
chr6 150267728 150267728 1 + T C rs78826737 150267725 + 150267705 150267745 41 CATTACTTCTCAATGGGAGACTGTATAGGATGGCTTGAGGA CATTACTTCTCAATGGGAGACTGCATAGGATGGCTTGAGGA < 41bp 0.545964589982348 0.760972567760859 0.23232672 0.5518719 prediction 0.430015955557023 Functional Gain - ULBP2 ENSG00000131015 CDS Human protein_coding chr6:150267725 chr6:150267728 synonymous SNV . 0 24 hm5C_associated_SNPs_122112 0 0 1 0 1 ULBP2 chr6:150267789 5'GT 150267789 Upstream 62bp
chr15 42136739 42136739 1 + C A GBM 42136735 + 42136715 42136755 41 TGACTTCCCTGTATGGGCAGCTGGCTGGCCTGAAGGAGCTG TGACTTCCCTGTATGGGCAGCTGGATGGCCTGAAGGAGCTG < 41bp 0.293537362717696 0.715002093918073 0.40206176 0.5007078 prediction 0.430004187836146 Functional Gain - JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42136735 chr15:42136739 nonsynonymous SNV 0.782 1 25 hm5C_associated_SNPs_122114 0 0 1 0 2 JMJD7-PLA2G4B;PLA2G4B chr15:42136669 3'AG 42136669 Downstream 71bp
chr15 42136739 42136739 1 + C A GBM 42136735 + 42136715 42136755 41 TGACTTCCCTGTATGGGCAGCTGGCTGGCCTGAAGGAGCTG TGACTTCCCTGTATGGGCAGCTGGATGGCCTGAAGGAGCTG < 41bp 0.293537362717696 0.715002093918073 0.40206176 0.5007078 prediction 0.430004187836146 Functional Gain - JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42136735 chr15:42136739 nonsynonymous SNV 0.782 1 25 hm5C_associated_SNPs_122114 0 0 1 0 2 JMJD7-PLA2G4B;PLA2G4B chr15:42136805 5'GT 42136805 Upstream 67bp
chr7 76121501 76121501 1 + C T UCEC 76121500 + 76121480 76121520 41 CCCAGCGGTCCCTCAAGCAGCCCAGGGAGCGTCCCTGCCAC CCCAGCGGTCCCTCAAGCAGCTCAGGGAGCGTCCCTGCCAC < 41bp 0.462104488095198 0.715000477460721 0.3190313 0.7497735 prediction 0.430000954921443 Functional Gain - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76121500 chr7:76121501 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_122115 0 0 0 0 2 DTX2 chr7:76121470 3'AG 76121470 Downstream 32bp
chr7 76121501 76121501 1 + C T UCEC 76121500 + 76121480 76121520 41 CCCAGCGGTCCCTCAAGCAGCCCAGGGAGCGTCCCTGCCAC CCCAGCGGTCCCTCAAGCAGCTCAGGGAGCGTCCCTGCCAC < 41bp 0.462104488095198 0.715000477460721 0.3190313 0.7497735 prediction 0.430000954921443 Functional Gain - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76121500 chr7:76121501 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_122115 0 0 0 0 2 DTX2 chr7:76121570 5'GT 76121570 Upstream 70bp
chr20 21689923 21689923 1 + C G rs148928178 21689922 + 21689902 21689942 41 TGCGCCTACCCGGCCTCCAACCAGCACGGCGTGTACAGCGC TGCGCCTACCCGGCCTCCAACGAGCACGGCGTGTACAGCGC < 41bp 0.392734525408681 0.714998771660083 0.36225173 0.93554157 prediction 0.429997543320167 Functional Gain - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21689922 chr20:21689923 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_122118 0 0 0 0 1 PAX1 chr20:21689860 3'AG 21689860 Downstream 64bp
chr19 17598303 17598303 1 + C T CESC 17598302 + 17598282 17598322 41 CATCTACACGTCGGGGACCACCGGGCTGCCCAAGGCTGCCA CATCTACACGTCGGGGACCACTGGGCTGCCCAAGGCTGCCA < 41bp 0.556923877876537 0.771922223703705 0.9073758 0.84762293 prediction 0.429996691654337 Functional Gain - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17598302 chr19:17598303 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_122119 0 0 0 0 2 SLC27A1 chr19:17598269 3'AG 17598269 Downstream 35bp
chr19 17598303 17598303 1 + C T CESC 17598302 + 17598282 17598322 41 CATCTACACGTCGGGGACCACCGGGCTGCCCAAGGCTGCCA CATCTACACGTCGGGGACCACTGGGCTGCCCAAGGCTGCCA < 41bp 0.556923877876537 0.771922223703705 0.9073758 0.84762293 prediction 0.429996691654337 Functional Gain - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17598302 chr19:17598303 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_122119 0 0 0 0 2 SLC27A1 chr19:17598338 5'GT 17598338 Upstream 36bp
chr1 161138831 161138831 1 + A G LIHC 161138828 + 161138808 161138848 41 ACTCATTCGCCAGGCCTTGGCTGAGCGCTGGAGCCAGTGGT ACTCATTCGCCAGGCCTTGGCTGGGCGCTGGAGCCAGTGGT < 41bp 0.599196163856948 0.81419280433696 0.2566942 0.38164115 prediction 0.429993280960022 Functional Gain - PPOX ENSG00000143224 CDS Human protein_coding chr1:161138828 chr1:161138831 nonsynonymous SNV 0.994 5 24 hm5C_associated_SNPs_122120 0 0 1 1 1 PPOX chr1:161138783 3'AG 161138783 Downstream 49bp
chr22 42209354 42209354 1 + A G UCEC 42209351 + 42209331 42209371 41 TTGTGCACTATTACTTTGACCACAACTCCAACTGGAACCTC TTGTGCACTATTACTTTGACCACGACTCCAACTGGAACCTC < 41bp 0.578752466887126 0.793748669444435 0.045332104 0.028385341 prediction 0.429992405114618 Functional Gain - CCDC134 ENSG00000100147 CDS Human protein_coding chr22:42209351 chr22:42209354 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_122122 0 0 1 0 2 CCDC134 chr22:42209268 3'AG 42209268 Downstream 87bp
chr22 42209354 42209354 1 + A G UCEC 42209351 + 42209331 42209371 41 TTGTGCACTATTACTTTGACCACAACTCCAACTGGAACCTC TTGTGCACTATTACTTTGACCACGACTCCAACTGGAACCTC < 41bp 0.578752466887126 0.793748669444435 0.045332104 0.028385341 prediction 0.429992405114618 Functional Gain - CCDC134 ENSG00000100147 CDS Human protein_coding chr22:42209351 chr22:42209354 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_122122 0 0 1 0 2 CCDC134 chr22:42209449 5'GT 42209449 Upstream 96bp
chr10 118960696 118960696 1 + C T SKCM 118960695 + 118960675 118960715 41 GAAGACAGAAAACAGGATCTCCAGGGGCATCTGCAGAAGGT GAAGACAGAAAACAGGATCTCTAGGGGCATCTGCAGAAGGT < 41bp 0.554302149047627 0.769296638897466 0.92291594 0.88333714 prediction 0.429988979699679 Functional Gain - KCNK18 ENSG00000186795 CDS Human protein_coding chr10:118960695 chr10:118960696 stopgain 0.001 0 22 hm5C_associated_SNPs_122124 0 0 0 0 1 KCNK18 chr10:118960670 3'AG 118960670 Downstream 27bp
chr5 115423282 115423282 1 + A G rs141226616 115423279 + 115423259 115423299 41 GGATTCTTCAAAAACTTCACCTGAAGGTTTGTATTTGTGTG GGATTCTTCAAAAACTTCACCTGGAGGTTTGTATTTGTGTG < 41bp 0.545494842974952 0.760485696214606 0.050641388 0.09821269 prediction 0.429981706479308 Functional Gain - COMMD10 ENSG00000145781 CDS Human protein_coding chr5:115423279 chr5:115423282 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_122126 0 0 0 0 2 COMMD10 chr5:115423194 3'AG 115423194 Downstream 89bp
chr5 115423282 115423282 1 + A G rs141226616 115423279 + 115423259 115423299 41 GGATTCTTCAAAAACTTCACCTGAAGGTTTGTATTTGTGTG GGATTCTTCAAAAACTTCACCTGGAGGTTTGTATTTGTGTG < 41bp 0.545494842974952 0.760485696214606 0.050641388 0.09821269 prediction 0.429981706479308 Functional Gain - COMMD10 ENSG00000145781 CDS Human protein_coding chr5:115423279 chr5:115423282 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_122126 0 0 0 0 2 COMMD10 chr5:115423284 5'GT 115423284 Upstream 3bp
chr5 140076574 140076574 1 + C T SKCM 140076573 + 140076553 140076593 41 GTTTCAGGATCCCAGACTATCCCAGAACAAGCAGGCCCTGG GTTTCAGGATCCCAGACTATCTCAGAACAAGCAGGCCCTGG < 41bp 0.606266876867892 0.821257664932164 0.20900342 0.112445 prediction 0.429981576128545 Functional Gain - HARS2 ENSG00000112855 CDS Human protein_coding chr5:140076573 chr5:140076574 synonymous SNV . 0 22 hm5C_associated_SNPs_122127 0 0 1 0 2 HARS2 chr5:140076528 3'AG 140076528 Downstream 47bp
chr5 140076574 140076574 1 + C T SKCM 140076573 + 140076553 140076593 41 GTTTCAGGATCCCAGACTATCCCAGAACAAGCAGGCCCTGG GTTTCAGGATCCCAGACTATCTCAGAACAAGCAGGCCCTGG < 41bp 0.606266876867892 0.821257664932164 0.20900342 0.112445 prediction 0.429981576128545 Functional Gain - HARS2 ENSG00000112855 CDS Human protein_coding chr5:140076573 chr5:140076574 synonymous SNV . 0 22 hm5C_associated_SNPs_122127 0 0 1 0 2 HARS2 chr5:140076655 5'GT 140076655 Upstream 82bp
chr17 38243103 38243103 1 + C T rs2230702 38243102 + 38243082 38243122 41 CAAAAAACTGCCCATGTTCTCCGAGGTGAGTGGCAGAAGTG CAAAAAACTGCCCATGTTCTCTGAGGTGAGTGGCAGAAGTG < 41bp 0.475271208765413 0.714988817989238 0.88346934 0.5240698 prediction 0.429977635978477 Functional Gain - THRA ENSG00000126351 CDS Human protein_coding chr17:38243102 chr17:38243103 synonymous SNV . 0 22 hm5C_associated_SNPs_122128 0 0 1 0 1 THRA chr17:38243106 5'GT 38243106 Upstream 4bp
chr4 1801058 1801058 1 + C T SKCM 1801057 + 1801037 1801077 41 GCTGTGGAGCTGAGCTGTCCCCCGCCCGGGGGTGGTCCCAT GCTGTGGAGCTGAGCTGTCCCTCGCCCGGGGGTGGTCCCAT < 41bp 0.475731426747707 0.714986836290462 0.04887551 0.061452746 prediction 0.429973672580923 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1801057 chr4:1801058 nonsynonymous SNV 0.020 0 22 hm5C_associated_SNPs_122131 0 0 1 0 1 FGFR3 chr4:1800981 3'AG 1800981 Downstream 78bp
chr6 41086828 41086828 1 + C A rs61731054 41086824 + 41086804 41086844 41 TGTTGGCTGAAATAAACTTTCTGGCACAGAAAGAAGGGCAT TGTTGGCTGAAATAAACTTTCTGGAACAGAAAGAAGGGCAT < 41bp 0.325786980976698 0.714979578491049 0.42838672 0.5467624 prediction 0.429959156982098 Functional Gain - ADCY10P1 ENSG00000161912 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:41086824 chr6:41086828 . . 0 25 hm5C_associated_SNPs_122134 0 0 0 0 1 ADCY10P1 chr6:41086846 5'GT 41086846 Upstream 19bp
chr2 207655349 207655349 1 + C A THCA 207655345 + 207655325 207655365 41 CTTATTGTTTGGGTTCAAGCCACCCCAGAGGATTCCTTGCT CTTATTGTTTGGGTTCAAGCCACCACAGAGGATTCCTTGCT < 41bp 0.283655075211137 0.714978118130482 0.13851863 0.14352056 prediction 0.429956236260963 Functional Gain - FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207655345 chr2:207655349 nonsynonymous SNV 0.868 4 25 hm5C_associated_SNPs_122135 0 0 1 0 2 FASTKD2 chr2:207655296 3'AG 207655296 Downstream 54bp
chr2 207655349 207655349 1 + C A THCA 207655345 + 207655325 207655365 41 CTTATTGTTTGGGTTCAAGCCACCCCAGAGGATTCCTTGCT CTTATTGTTTGGGTTCAAGCCACCACAGAGGATTCCTTGCT < 41bp 0.283655075211137 0.714978118130482 0.13851863 0.14352056 prediction 0.429956236260963 Functional Gain - FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207655345 chr2:207655349 nonsynonymous SNV 0.868 4 25 hm5C_associated_SNPs_122135 0 0 1 0 2 FASTKD2 chr2:207655410 5'GT 207655410 Upstream 62bp
chr3 9767651 9767651 1 + T C rs71314361 9767648 + 9767628 9767668 41 TCCAGGGCTGCAGCCAAGATCTCTGATGGCTCCCAGTACTA TCCAGGGCTGCAGCCAAGATCTCCGATGGCTCCCAGTACTA < 41bp 0.539086075516989 0.754062647501538 0.075089544 0.4063918 prediction 0.429953143969097 Functional Gain - CPNE9 ENSG00000144550 CDS Human protein_coding chr3:9767648 chr3:9767651 synonymous SNV . 0 24 hm5C_associated_SNPs_122136 0 0 0 0 1 CPNE9 chr3:9767633 3'AG 9767633 Downstream 19bp
chr11 62381330 62381330 1 + C T COAD 62381329 + 62381309 62381349 41 CGTTACCTGGATCCCGGTGACCGGGATGTGGCTGAGTGAGT CGTTACCTGGATCCCGGTGACTGGGATGTGGCTGAGTGAGT < 41bp 0.53311912199396 0.748093728634199 0.67297685 0.42474067 prediction 0.429949213280478 Functional Gain - ROM1 ENSG00000149489 CDS Human protein_coding chr11:62381329 chr11:62381330 nonsynonymous SNV 0.950 2 22 hm5C_associated_SNPs_122137 0 0 0 0 1 ROM1 chr11:62381343 5'GT 62381343 Upstream 14bp
chr2 71148413 71148413 1 + C T LUAD 71148412 + 71148392 71148432 41 CAGCTGAACCTCTCCGAGACCCAGGTAAGAGACCAGGGCCA CAGCTGAACCTCTCCGAGACCTAGGTAAGAGACCAGGGCCA < 41bp 0.543555945472114 0.758530405978067 0.9211818 0.8992027 prediction 0.429948921011906 Functional Gain - VAX2 ENSG00000116035 CDS Human protein_coding chr2:71148412 chr2:71148413 stopgain 0.997 1 22 hm5C_associated_SNPs_122138 0 0 0 0 1 VAX2 chr2:71148415 5'GT 71148415 Upstream 3bp
chr19 1073969 1073969 1 + C T UCEC 1073968 + 1073948 1073988 41 CCATGGAAAGCCTGTATGGACCGGGCAGTGAGGGCACGCCT CCATGGAAAGCCTGTATGGACTGGGCAGTGAGGGCACGCCT < 41bp 0.544722975408685 0.759696006518582 0.23300013 0.07012215 prediction 0.429946062219796 Functional Gain - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1073968 chr19:1073969 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_122139 0 0 1 0 2 ARHGAP45 chr19:1073947 3'AG 1073947 Downstream 23bp
chr19 1073969 1073969 1 + C T UCEC 1073968 + 1073948 1073988 41 CCATGGAAAGCCTGTATGGACCGGGCAGTGAGGGCACGCCT CCATGGAAAGCCTGTATGGACTGGGCAGTGAGGGCACGCCT < 41bp 0.544722975408685 0.759696006518582 0.23300013 0.07012215 prediction 0.429946062219796 Functional Gain - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1073968 chr19:1073969 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_122139 0 0 1 0 2 ARHGAP45 chr19:1074013 5'GT 1074013 Upstream 45bp
chr8 24257753 24257753 1 + C T SKCM 24257752 + 24257732 24257772 41 TGGGCCATGTCCTTGGTATGCCTGATGTTCCATTCAACACC TGGGCCATGTCCTTGGTATGCTTGATGTTCCATTCAACACC < 41bp 0.602140940528885 0.817113761082575 0.12537727 0.11064702 prediction 0.42994564110738 Functional Gain - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24257752 chr8:24257753 nonsynonymous SNV 0.905 0 22 hm5C_associated_SNPs_122141 0 0 0 0 2 ADAMDEC1 chr8:24257683 3'AG 24257683 Downstream 71bp
chr8 24257753 24257753 1 + C T SKCM 24257752 + 24257732 24257772 41 TGGGCCATGTCCTTGGTATGCCTGATGTTCCATTCAACACC TGGGCCATGTCCTTGGTATGCTTGATGTTCCATTCAACACC < 41bp 0.602140940528885 0.817113761082575 0.12537727 0.11064702 prediction 0.42994564110738 Functional Gain - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24257752 chr8:24257753 nonsynonymous SNV 0.905 0 22 hm5C_associated_SNPs_122141 0 0 0 0 2 ADAMDEC1 chr8:24257813 5'GT 24257813 Upstream 61bp
chr2 71838712 71838712 1 + C T ESCA 71838711 + 71838691 71838731 41 TCCTGTGTCATCAGGAACCTCCGGAAGAACCCCAACTTTGA TCCTGTGTCATCAGGAACCTCTGGAAGAACCCCAACTTTGA < 41bp 0.549148748677026 0.764111646280073 0.8660167 0.76920366 prediction 0.429925795206093 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71838711 chr2:71838712 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_122145 0 0 0 0 1 DYSF chr2:71838756 5'GT 71838756 Upstream 45bp
chr3 128722870 128722870 1 + C T rs534655542 128722869 + 128722849 128722889 41 GGCGCTGGCGCAACAGGTGCCCGGCTTGCAGCGCTGGGTGC GGCGCTGGCGCAACAGGTGCCTGGCTTGCAGCGCTGGGTGC < 41bp 0.544950754946995 0.759912800314151 0.7485343 0.6987717 prediction 0.429924090734314 Functional Gain - EFCC1 ENSG00000114654 CDS Human protein_coding chr3:128722869 chr3:128722870 synonymous SNV . 0 22 hm5C_associated_SNPs_122146 0 0 0 0 1 EFCC1 chr3:128722920 5'GT 128722920 Upstream 51bp
chrX 52659416 52659416 1 + C T rs782770513 52659415 + 52659395 52659435 41 TGGGAAACAGCTGCGCCGCCCCGGGAAAAGCAAATACTTCT TGGGAAACAGCTGCGCCGCCCTGGGAAAAGCAAATACTTCT < 41bp 0.535442147013158 0.750392628573339 0.40208972 0.32032502 prediction 0.429900963120363 Functional Gain - SSX8 ENSG00000157965 ncRNA_exonic Human unprocessed_pseudogene chrX:52659415 chrX:52659416 . . 0 22 hm5C_associated_SNPs_122149 0 0 0 0 1 SSX8 chrX:52659321 3'AG 52659321 Downstream 96bp
chr17 38511541 38511541 1 + C T SARC 38511540 + 38511520 38511560 41 CAGGACCTGGAGCAGCCGGACCGGGTGGACATGCTGCAGGA CAGGACCTGGAGCAGCCGGACTGGGTGGACATGCTGCAGGA < 41bp 0.586243055138146 0.80118717466908 0.9216808 0.9247546 prediction 0.429888239061867 Functional Gain - RARA ENSG00000131759 CDS Human protein_coding chr17:38511540 chr17:38511541 nonsynonymous SNV 0.919 5 22 hm5C_associated_SNPs_122150 0 0 1 0 1 RARA chr17:38511515 3'AG 38511515 Downstream 27bp
chr6 26384039 26384039 1 + C A HNSC 26384035 + 26384015 26384055 41 CCTAGGCCTCTGGTCTCTGCCTGCCCTGGGTGCTCATGGAA CCTAGGCCTCTGGTCTCTGCCTGCACTGGGTGCTCATGGAA < 41bp 0.416297853139361 0.714936273041751 0.07687646 0.16692388 prediction 0.429872546083503 Functional Gain - BTN2A2 ENSG00000124508 UTR5 Human protein_coding chr6:26384035 chr6:26384039 . . 0 25 hm5C_associated_SNPs_122151 0 0 1 0 1 BTN2A2 chr6:26384020 3'AG 26384020 Downstream 20bp
chr16 30485555 30485555 1 + C G LUSC 30485551 + 30485531 30485571 41 TACAACCTGGACGTGCGGGGCGCGCGGAGCTTCTCCCCACC TACAACCTGGACGTGCGGGGCGCGGGGAGCTTCTCCCCACC < 41bp 0.661986456767627 0.876915226881761 0.77159315 0.9078522 prediction 0.429857540228269 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30485551 chr16:30485555 nonsynonymous SNV 0.203 0 25 hm5C_associated_SNPs_122153 0 0 0 0 3 ITGAL chr16:30485517 3'AG 30485517 Downstream 39bp
chr16 30485555 30485555 1 + C G LUSC 30485551 + 30485531 30485571 41 TACAACCTGGACGTGCGGGGCGCGCGGAGCTTCTCCCCACC TACAACCTGGACGTGCGGGGCGCGGGGAGCTTCTCCCCACC < 41bp 0.661986456767627 0.876915226881761 0.77159315 0.9078522 prediction 0.429857540228269 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30485551 chr16:30485555 nonsynonymous SNV 0.203 0 25 hm5C_associated_SNPs_122153 0 0 0 0 3 ITGAL chr16:30485608 5'GT 30485608 Upstream 54bp
chr16 30485555 30485555 1 + C G LUSC 30485551 + 30485531 30485571 41 TACAACCTGGACGTGCGGGGCGCGCGGAGCTTCTCCCCACC TACAACCTGGACGTGCGGGGCGCGGGGAGCTTCTCCCCACC < 41bp 0.661986456767627 0.876915226881761 0.77159315 0.9078522 prediction 0.429857540228269 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30485551 chr16:30485555 nonsynonymous SNV 0.203 0 25 hm5C_associated_SNPs_122153 0 0 0 0 3 ITGAL chr16:30485619 5'GT 30485619 Upstream 65bp
chr2 202150022 202150022 1 + T C LUSC 202150020 + 202150000 202150040 41 ATCCAGTCACTTTGCCAGAGCCTGAGAGAGCGATGTCCTCG ATCCAGTCACTTTGCCAGAGCCCGAGAGAGCGATGTCCTCG < 41bp 0.479840641220929 0.714926596971606 0.37633023 0.35282883 prediction 0.429853193943212 Functional Gain - CASP8 ENSG00000064012 CDS Human protein_coding chr2:202150020 chr2:202150022 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_122155 0 0 1 0 1 CASP8 chr2:202150040 5'GT 202150040 Upstream 19bp
chr17 5037186 5037186 1 + T C STAD 5037184 + 5037164 5037204 41 CTTGGCCCTGCCCTACAGATCATGAAGGAGAGGGGCAAGAG CTTGGCCCTGCCCTACAGATCACGAAGGAGAGGGGCAAGAG < 41bp 0.43708452610863 0.714913601582742 0.33443975 0.44218278 prediction 0.429827203165485 Functional Gain - USP6 ENSG00000129204 CDS Human protein_coding chr17:5037184 chr17:5037186 nonsynonymous SNV 0.116 2 23 hm5C_associated_SNPs_122157 0 0 0 0 1 USP6 chr17:5037182 3'AG 5037182 Downstream 5bp
chr12 1943501 1943501 1 + C T SKCM 1943500 + 1943480 1943520 41 GGGAAGGACATGCGGATGGTCCCCATGGAGATGTTCAACTA GGGAAGGACATGCGGATGGTCTCCATGGAGATGTTCAACTA < 41bp 0.61154016582689 0.826452716676032 0.004169464 0.9635389 prediction 0.429825101698284 Functional Gain - LRTM2 ENSG00000166159 CDS Human protein_coding chr12:1943500 chr12:1943501 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_122158 0 0 0 0 1 LRTM2 chr12:1943433 3'AG 1943433 Downstream 69bp
chr4 103790311 103790311 1 + C T UCEC 103790310 + 103790290 103790330 41 TATCTGAAGCGGCTCCCAGTCCCTGAAAGCATTACCGGGTT TATCTGAAGCGGCTCCCAGTCTCTGAAAGCATTACCGGGTT < 41bp 0.542398103196832 0.757280551871629 0.2745738 0.24101996 prediction 0.429764897349594 Functional Gain - CISD2 ENSG00000145354 CDS Human protein_coding chr4:103790310 chr4:103790311 nonsynonymous SNV 0.069 4 22 hm5C_associated_SNPs_122169 0 0 1 0 1 CISD2 chr4:103790344 5'GT 103790344 Upstream 34bp
chr1 3329300 3329300 1 + A G rs369624816 3329297 + 3329277 3329317 41 TGCCCCAGGTGTGCCCGGCGCGGATGCCCCAGCAGCCCCCG TGCCCCAGGTGTGCCCGGCGCGGGTGCCCCAGCAGCCCCCG < 41bp 0.58648404185967 0.801358954202872 0.8025038 0.8879125 prediction 0.429749824686404 Functional Gain - PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3329297 chr1:3329300 nonsynonymous SNV 0.082 0 24 hm5C_associated_SNPs_122172 0 0 0 0 1 PRDM16 chr1:3329364 5'GT 3329364 Upstream 65bp
chr1 9657101 9657101 1 + C T SKCM 9657100 + 9657080 9657120 41 AGCAGCTGGCCGCCTTCGCTCCCCGCGAGGAGGTGAGGCCG AGCAGCTGGCCGCCTTCGCTCTCCGCGAGGAGGTGAGGCCG < 41bp 0.448371213534634 0.714874433485737 0.27897847 0.3887694 prediction 0.429748866971474 Functional Gain - TMEM201 ENSG00000188807 CDS Human protein_coding chr1:9657100 chr1:9657101 nonsynonymous SNV 0.006 4 22 hm5C_associated_SNPs_122173 0 0 1 0 1 TMEM201 chr1:9657111 5'GT 9657111 Upstream 11bp
chr10 74618991 74618991 1 + C T BRCA 74618990 + 74618970 74619010 41 ATATCTGTGAGGCTACCATCCCGGCGTGAACGCTGTCAGTT ATATCTGTGAGGCTACCATCCTGGCGTGAACGCTGTCAGTT < 41bp 0.467639541573813 0.714872769887388 0.6884127 0.38062593 prediction 0.429745539774775 Functional Gain - MCU ENSG00000156026 CDS Human protein_coding chr10:74618990 chr10:74618991 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_122175 0 0 0 0 1 MCU chr10:74618935 3'AG 74618935 Downstream 57bp
chr16 71674369 71674369 1 + C T UCEC 71674368 + 71674348 71674388 41 GGCCTCCTACTTTGTCCTTGCCGGATTCAGTGCCAGCTTTT GGCCTCCTACTTTGTCCTTGCTGGATTCAGTGCCAGCTTTT < 41bp 0.554030594608344 0.768901379879968 0.89002216 0.6555207 prediction 0.429741570543248 Functional Gain - MARVELD3 ENSG00000140832 CDS Human protein_coding chr16:71674368 chr16:71674369 synonymous SNV . 0 22 hm5C_associated_SNPs_122176 0 0 0 4 1 MARVELD3 chr16:71674293 3'AG 71674293 Downstream 77bp
chr5 1219679 1219679 1 + T C UCEC 1219676 + 1219656 1219696 41 TCTTCACGCTGAACTCCGGCCAGTACTGGCTCTCCCTGCTG TCTTCACGCTGAACTCCGGCCAGCACTGGCTCTCCCTGCTG < 41bp 0.514951023144925 0.729814645752706 0.10752463 0.11994752 prediction 0.42972724521556 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1219676 chr5:1219679 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_122179 0 0 0 0 1 SLC6A19 chr5:1219620 3'AG 1219620 Downstream 60bp
chr1 109637040 109637040 1 + C T GBM 109637039 + 109637019 109637059 41 TTCTCTCTTTTGCCTGCTAGCCGCTGTGATTGGAACCAGGC TTCTCTCTTTTGCCTGCTAGCTGCTGTGATTGGAACCAGGC < 41bp 0.480786595414272 0.714836395097745 0.18918419 0.21724379 prediction 0.42967279019549 Functional Gain - TMEM167B ENSG00000215717 CDS Human protein_coding chr1:109637039 chr1:109637040 synonymous SNV . 0 22 hm5C_associated_SNPs_122189 0 0 1 0 1 TMEM167B chr1:109637039 3'AG 109637039 Downstream 2bp
chr5 23522494 23522494 1 + C A rs112157044 23522493 + 23522473 23522513 41 CATACAAAGAGGTCAGCGAGCCGCAGGATGATGATTACCTC CATACAAAGAGGTCAGCGAGCAGCAGGATGATGATTACCTC < 41bp 0.633694868309558 0.848528837286257 0.31886935 0.34028232 prediction 0.429667937953399 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23522493 chr5:23522494 nonsynonymous SNV 0.264 3 22 hm5C_associated_SNPs_122190 0 0 0 0 2 PRDM9 chr5:23522413 3'AG 23522413 Downstream 82bp
chr5 23522494 23522494 1 + C A rs112157044 23522493 + 23522473 23522513 41 CATACAAAGAGGTCAGCGAGCCGCAGGATGATGATTACCTC CATACAAAGAGGTCAGCGAGCAGCAGGATGATGATTACCTC < 41bp 0.633694868309558 0.848528837286257 0.31886935 0.34028232 prediction 0.429667937953399 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23522493 chr5:23522494 nonsynonymous SNV 0.264 3 22 hm5C_associated_SNPs_122190 0 0 0 0 2 PRDM9 chr5:23522514 5'GT 23522514 Upstream 21bp
chrX 147084779 147084779 1 + T C UCEC 147084777 + 147084757 147084797 41 TGCCCAACAGTGAAAATGCTCATGGCCAATCTCTGGAAGAA TGCCCAACAGTGAAAATGCTCACGGCCAATCTCTGGAAGAA < 41bp 0.456520820107191 0.714824638139781 0.2896683 0.2610219 prediction 0.429649276279561 Functional Gain - FMR1NB ENSG00000176988 CDS Human protein_coding chrX:147084777 chrX:147084779 synonymous SNV . 0 23 hm5C_associated_SNPs_122193 0 0 0 0 1 FMR1NB chrX:147084840 5'GT 147084840 Upstream 62bp
chr13 24858322 24858322 1 + T C COAD 24858319 + 24858299 24858339 41 TCTGCCTTAGTGGATGACAACGGTAGTGAGGAGGACTTCAG TCTGCCTTAGTGGATGACAACGGCAGTGAGGAGGACTTCAG < 41bp 0.508848577729364 0.723671224870911 0.4976776 0.59997547 prediction 0.429645294283095 Functional Gain - SPATA13 ENSG00000182957;ENSG00000273167 CDS Human other chr13:24858319 chr13:24858322 synonymous SNV . 0 24 hm5C_associated_SNPs_122194 0 0 0 0 2 SPATA13 chr13:24858273 3'AG 24858273 Downstream 50bp
chr13 24858322 24858322 1 + T C COAD 24858319 + 24858299 24858339 41 TCTGCCTTAGTGGATGACAACGGTAGTGAGGAGGACTTCAG TCTGCCTTAGTGGATGACAACGGCAGTGAGGAGGACTTCAG < 41bp 0.508848577729364 0.723671224870911 0.4976776 0.59997547 prediction 0.429645294283095 Functional Gain - SPATA13 ENSG00000182957;ENSG00000273167 CDS Human other chr13:24858319 chr13:24858322 synonymous SNV . 0 24 hm5C_associated_SNPs_122194 0 0 0 0 2 SPATA13 chr13:24858409 5'GT 24858409 Upstream 88bp
chr17 38249513 38249513 1 - G A GBM 38249514 - 38249494 38249534 41 CCGCTCGGGCATGGAGAATTCCGCTTCGGTGGAGCAGCTCC CCGCTCGGGCATGGAGAATTCTGCTTCGGTGGAGCAGCTCC < 41bp 0.579767430693522 0.794586483215003 0.18118024 0.2427927 prediction 0.429638105042962 Functional Gain - NR1D1;THRA ENSG00000126351;ENSG00000126368 CDS Human other chr17:38249514 chr17:38249513 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_122195 0 0 0 0 1 NR1D1;THRA chr17:38249535 3'AG 38249535 Downstream 23bp
chr1 43803528 43803528 1 + C T SKCM 43803527 + 43803507 43803547 41 AGTGGCGGAGAAGATGCCCTCCTGGGCCCTCTTCATGGTCA AGTGGCGGAGAAGATGCCCTCTTGGGCCCTCTTCATGGTCA < 41bp 0.514729948074585 0.729547012108799 0.10355714 0.123957664 prediction 0.429634128068427 Functional Gain - MPL ENSG00000117400 CDS Human protein_coding chr1:43803527 chr1:43803528 synonymous SNV . 0 22 hm5C_associated_SNPs_122197 0 0 0 0 1 MPL chr1:43803598 5'GT 43803598 Upstream 71bp
chr17 41001637 41001637 1 + C T OV 41001636 + 41001616 41001656 41 AGATACCAGCTTGTGGTGACCCAGAGAAAGGAGGAGGAGTC AGATACCAGCTTGTGGTGACCTAGAGAAAGGAGGAGGAGTC < 41bp 0.463286398643295 0.714813505704113 0.8059324 0.32456082 prediction 0.429627011408227 Functional Gain - AOC2 ENSG00000131480 CDS Human protein_coding chr17:41001636 chr17:41001637 stopgain 0.999 0 22 hm5C_associated_SNPs_122199 0 0 1 0 1 AOC2 chr17:41001618 3'AG 41001618 Downstream 20bp
chr9 35751705 35751705 1 + T C OV 35751703 + 35751683 35751723 41 GTGTACAGACTTGGCGAGGACGTGGTGGGGACCTTAAACTT GTGTACAGACTTGGCGAGGACGCGGTGGGGACCTTAAACTT < 41bp 0.640631149688086 0.855431365502078 0.3989321 0.4395716 prediction 0.429600431627984 Functional Gain - RGP1 ENSG00000107185 CDS Human protein_coding chr9:35751703 chr9:35751705 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_122203 0 0 1 0 2 RGP1 chr9:35751624 3'AG 35751624 Downstream 82bp
chr9 35751705 35751705 1 + T C OV 35751703 + 35751683 35751723 41 GTGTACAGACTTGGCGAGGACGTGGTGGGGACCTTAAACTT GTGTACAGACTTGGCGAGGACGCGGTGGGGACCTTAAACTT < 41bp 0.640631149688086 0.855431365502078 0.3989321 0.4395716 prediction 0.429600431627984 Functional Gain - RGP1 ENSG00000107185 CDS Human protein_coding chr9:35751703 chr9:35751705 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_122203 0 0 1 0 2 RGP1 chr9:35751751 5'GT 35751751 Upstream 47bp
chr10 98092315 98092315 1 + C A LUSC 98092311 + 98092291 98092331 41 GATTTAGTTCTGTGCCCCTACGAGCGTCGTGCCTTTGCCCT GATTTAGTTCTGTGCCCCTACGAGAGTCGTGCCTTTGCCCT < 41bp 0.723875000163246 0.938673909561204 0.6053593 0.8964473 prediction 0.429597818795916 Functional Gain - DNTT ENSG00000107447 CDS Human protein_coding chr10:98092311 chr10:98092315 nonsynonymous SNV 0.109 1 25 hm5C_associated_SNPs_122206 0 0 0 0 1 DNTT chr10:98092353 5'GT 98092353 Upstream 39bp
chr19 55281280 55281280 1 + T A rs374843727 55281276 + 55281256 55281296 41 TGCTGAGCTGAGCTCGGTCGCGGCTGCCTGTCTGCTCCGGC TGCTGAGCTGAGCTCGGTCGCGGCAGCCTGTCTGCTCCGGC < 41bp 0.453899170102074 0.714792899349318 0.8655156 0.9243898 prediction 0.429585798698635 Functional Gain - LOC101928804 ENSG00000215765 ncRNA_intronic Human protein_coding chr19:55281276 chr19:55281280 . . 0 25 hm5C_associated_SNPs_122207 0 0 0 0 1 KIR2DL1 chr19:55281336 5'GT 55281336 Upstream 57bp
chr1 211462677 211462677 1 + C A COAD 211462676 + 211462656 211462696 41 TGGTAGCAGTTTCCTGTAGTCCCAATGCAGCCAACACCATC TGGTAGCAGTTTCCTGTAGTCACAATGCAGCCAACACCATC < 41bp 0.60449436862149 0.819283480134783 0.1361244 0.2515934 prediction 0.429578223026585 Functional Gain - RCOR3 ENSG00000117625 CDS Human protein_coding chr1:211462676 chr1:211462677 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_122210 0 0 1 2 1 RCOR3 chr1:211462738 5'GT 211462738 Upstream 62bp
chr1 161132782 161132782 1 + C A rs114213404 161132781 + 161132761 161132801 41 GAAATCAACCGCCGAGGCCGCCGGGCTCCACCGATACTTGC GAAATCAACCGCCGAGGCCGCAGGGCTCCACCGATACTTGC < 41bp 0.621419967349643 0.836206033866987 0.70597196 0.8697428 prediction 0.429572133034688 Functional Gain - USP21 ENSG00000143258 CDS Human protein_coding chr1:161132781 chr1:161132782 synonymous SNV . 0 22 hm5C_associated_SNPs_122212 0 0 1 0 2 USP21 chr1:161132709 3'AG 161132709 Downstream 74bp
chr1 161132782 161132782 1 + C A rs114213404 161132781 + 161132761 161132801 41 GAAATCAACCGCCGAGGCCGCCGGGCTCCACCGATACTTGC GAAATCAACCGCCGAGGCCGCAGGGCTCCACCGATACTTGC < 41bp 0.621419967349643 0.836206033866987 0.70597196 0.8697428 prediction 0.429572133034688 Functional Gain - USP21 ENSG00000143258 CDS Human protein_coding chr1:161132781 chr1:161132782 synonymous SNV . 0 22 hm5C_associated_SNPs_122212 0 0 1 0 2 USP21 chr1:161132864 5'GT 161132864 Upstream 83bp
chr6 53986293 53986293 1 + C T SKCM 53986292 + 53986272 53986312 41 CCTCTGATCTTCACATTTGTCCCCACTGTCAGAAGACTACC CCTCTGATCTTCACATTTGTCTCCACTGTCAGAAGACTACC < 41bp 0.446901690610732 0.714784144110979 0.011841834 0.9026458 prediction 0.429568288221957 Functional Gain - MLIP ENSG00000146147 CDS Human protein_coding chr6:53986292 chr6:53986293 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_122213 0 0 0 0 1 MLIP chr6:53986245 3'AG 53986245 Downstream 49bp
chr4 148555047 148555047 1 + A G LIHC 148555044 + 148555024 148555064 41 TTTCTTGCCATGTGGGATGTCTCAGATATTAGAGATGATAT TTTCTTGCCATGTGGGATGTCTCGGATATTAGAGATGATAT < 41bp 0.532821564283843 0.747598418962323 0.13624021 0.20553648 prediction 0.42955370935696 Functional Gain - TMEM184C ENSG00000164168 CDS Human protein_coding chr4:148555044 chr4:148555047 synonymous SNV . 0 24 hm5C_associated_SNPs_122216 0 0 1 0 1 TMEM184C chr4:148555087 5'GT 148555087 Upstream 41bp
chr12 48134466 48134466 1 - G C LUAD 48134467 - 48134447 48134487 41 TCTCTGCCCCGTGCCCGGCCCCCGGGCCCAGCTGCTCAGGA TCTCTGCCCCGTGCCCGGCCCGCGGGCCCAGCTGCTCAGGA < 41bp 0.405739275358744 0.714768096158184 0.4246465 0.6848083 prediction 0.429536192316368 Functional Gain - RAPGEF3 ENSG00000079337 CDS Human protein_coding chr12:48134467 chr12:48134466 synonymous SNV . 0 22 hm5C_associated_SNPs_122218 0 0 0 0 1 RAPGEF3 chr12:48134425 5'GT 48134425 Upstream 42bp
chr6 144074958 144074958 1 + C A LIHC 144074957 + 144074937 144074977 41 ACCCATCGGAGAGGAATCTACCCGAGAGGAAAATGTAGTAA ACCCATCGGAGAGGAATCTACACGAGAGGAAAATGTAGTAA < 41bp 0.601151621156463 0.815915788148655 0.19713339 0.19301292 prediction 0.429528333984383 Functional Gain - PHACTR2 ENSG00000112419 CDS Human protein_coding chr6:144074957 chr6:144074958 synonymous SNV . 0 22 hm5C_associated_SNPs_122220 0 0 1 0 2 PHACTR2 chr6:144074891 3'AG 144074891 Downstream 68bp
chr6 144074958 144074958 1 + C A LIHC 144074957 + 144074937 144074977 41 ACCCATCGGAGAGGAATCTACCCGAGAGGAAAATGTAGTAA ACCCATCGGAGAGGAATCTACACGAGAGGAAAATGTAGTAA < 41bp 0.601151621156463 0.815915788148655 0.19713339 0.19301292 prediction 0.429528333984383 Functional Gain - PHACTR2 ENSG00000112419 CDS Human protein_coding chr6:144074957 chr6:144074958 synonymous SNV . 0 22 hm5C_associated_SNPs_122220 0 0 1 0 2 PHACTR2 chr6:144075049 5'GT 144075049 Upstream 92bp
chr5 170235654 170235654 1 + T C TGCT 170235651 + 170235631 170235671 41 TTGAGCTTCGGAGGAATGTTCTGTATTTCATTTTGGAAACC TTGAGCTTCGGAGGAATGTTCTGCATTTCATTTTGGAAACC < 41bp 0.547208391382765 0.761968338483679 0.20316496 0.2290577 prediction 0.429519894201828 Functional Gain - GABRP ENSG00000094755 CDS Human protein_coding chr5:170235651 chr5:170235654 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_122223 0 0 0 0 1 GABRP chr5:170235604 3'AG 170235604 Downstream 51bp
chr17 78022464 78022464 1 + C T rs183808038 78022463 + 78022443 78022483 41 CCAGATCCAGCAGCCCAGCACCGAGGAGGGGGCCATGGCAG CCAGATCCAGCAGCCCAGCACTGAGGAGGGGGCCATGGCAG < 41bp 0.470065671280552 0.714752931256366 0.39387807 0.2939745 prediction 0.429505862512732 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78022463 chr17:78022464 synonymous SNV . 0 22 hm5C_associated_SNPs_122226 0 0 1 0 2 CCDC40 chr17:78022382 3'AG 78022382 Downstream 83bp
chr17 78022464 78022464 1 + C T rs183808038 78022463 + 78022443 78022483 41 CCAGATCCAGCAGCCCAGCACCGAGGAGGGGGCCATGGCAG CCAGATCCAGCAGCCCAGCACTGAGGAGGGGGCCATGGCAG < 41bp 0.470065671280552 0.714752931256366 0.39387807 0.2939745 prediction 0.429505862512732 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78022463 chr17:78022464 synonymous SNV . 0 22 hm5C_associated_SNPs_122226 0 0 1 0 2 CCDC40 chr17:78022560 5'GT 78022560 Upstream 97bp
chr1 162551240 162551240 1 + T C UCEC 162551237 + 162551217 162551257 41 TGCATTCAGAAAGGAGCAGACTGTGGAGCAAAGGTAATGCC TGCATTCAGAAAGGAGCAGACTGCGGAGCAAAGGTAATGCC < 41bp 0.547056011306454 0.761805585875409 0.30225992 0.4780291 prediction 0.42949914913791 Functional Gain - UAP1 ENSG00000117143 CDS Human protein_coding chr1:162551237 chr1:162551240 synonymous SNV . 0 24 hm5C_associated_SNPs_122227 0 0 1 0 1 UAP1 chr1:162551249 5'GT 162551249 Upstream 10bp
chr1 179054832 179054832 1 + T C UCEC 179054829 + 179054809 179054849 41 CCAGCAGCTGGTCCTAAGAACAGTGAGGGGCTACTTAGAGA CCAGCAGCTGGTCCTAAGAACAGCGAGGGGCTACTTAGAGA < 41bp 0.519990290071576 0.734737400231732 0.2477436 0.3140545 prediction 0.429494220320313 Functional Gain - TOR3A ENSG00000186283 CDS Human protein_coding chr1:179054829 chr1:179054832 nonsynonymous SNV 0.640 4 24 hm5C_associated_SNPs_122228 0 0 0 0 1 TOR3A chr1:179054763 3'AG 179054763 Downstream 70bp
chr19 49671234 49671234 1 + T C UCEC 49671232 + 49671212 49671252 41 TTATAGTCTGGTCACACGCACATGGGGCTTCCGTGCCCCGA TTATAGTCTGGTCACACGCACACGGGGCTTCCGTGCCCCGA < 41bp 0.463723168668818 0.714740395166189 0.20782253 0.099488944 prediction 0.429480790332378 Functional Gain - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49671232 chr19:49671234 nonsynonymous SNV 0.813 4 23 hm5C_associated_SNPs_122232 0 0 1 0 1 TRPM4 chr19:49671174 3'AG 49671174 Downstream 61bp
chr12 119568519 119568519 1 + C A LUSC 119568518 + 119568498 119568538 41 CCCTGAGGAAGGGCAGAAGTCCCGCCGAAGGCACTCCCGCC CCCTGAGGAAGGGCAGAAGTCACGCCGAAGGCACTCCCGCC < 41bp 0.449356824964569 0.714739650289065 0.87998354 0.7852008 prediction 0.42947930057813 Functional Gain - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119568518 chr12:119568519 synonymous SNV . 0 22 hm5C_associated_SNPs_122233 0 0 1 0 1 SRRM4 chr12:119568483 3'AG 119568483 Downstream 37bp
chr19 17643096 17643096 1 + C T STAD 17643095 + 17643075 17643115 41 CTGCCCCGAGTCCGTGAGCACCGAGGACCCCTGACCCAGCT CTGCCCCGAGTCCGTGAGCACTGAGGACCCCTGACCCAGCT < 41bp 0.524322817759979 0.739060136408218 0.66051924 0.3866283 prediction 0.429474637296478 Functional Gain - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17643095 chr19:17643096 stopgain 0.806 0 22 hm5C_associated_SNPs_122235 0 0 0 0 1 FAM129C chr19:17643072 3'AG 17643072 Downstream 25bp
chr3 179041608 179041608 1 + T G rs560629952 179041606 + 179041586 179041626 41 CTGGCGCCCAAAGCCTCCAGCCTGAGAGTCGCCTCACTCGT CTGGCGCCCAAAGCCTCCAGCCGGAGAGTCGCCTCACTCGT < 41bp 0.35615745785857 0.714734402305973 0.22023493 0.9160356 prediction 0.429468804611946 Functional Gain - ZNF639 ENSG00000121864 UTR5 Human protein_coding chr3:179041606 chr3:179041608 . . 0 23 hm5C_associated_SNPs_122236 0 0 0 0 1 ZNF639 chr3:179041632 5'GT 179041632 Upstream 25bp
chr3 113623085 113623085 1 + A G HNSC 113623082 + 113623062 113623102 41 TGAATCAATTAGTCGGGTTTCAGAAACAGAGTCATTCGATG TGAATCAATTAGTCGGGTTTCAGGAACAGAGTCATTCGATG < 41bp 0.513334914430071 0.728069194450098 0.3151157 0.4240362 prediction 0.429468560040055 Functional Gain - GRAMD1C ENSG00000178075 CDS Human protein_coding chr3:113623082 chr3:113623085 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_122237 0 0 0 0 2 GRAMD1C chr3:113622987 3'AG 113622987 Downstream 99bp
chr3 113623085 113623085 1 + A G HNSC 113623082 + 113623062 113623102 41 TGAATCAATTAGTCGGGTTTCAGAAACAGAGTCATTCGATG TGAATCAATTAGTCGGGTTTCAGGAACAGAGTCATTCGATG < 41bp 0.513334914430071 0.728069194450098 0.3151157 0.4240362 prediction 0.429468560040055 Functional Gain - GRAMD1C ENSG00000178075 CDS Human protein_coding chr3:113623082 chr3:113623085 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_122237 0 0 0 0 2 GRAMD1C chr3:113623119 5'GT 113623119 Upstream 35bp
chr3 61734604 61734604 1 + A G rs147819655 61734601 + 61734581 61734621 41 CACGAGAATAGACACGGCAGCGCAGTGCAGATCCGCAGGCG CACGAGAATAGACACGGCAGCGCGGTGCAGATCCGCAGGCG < 41bp 0.522495333422853 0.737229443593614 0.2997958 0.41593942 prediction 0.429468220341521 Functional Gain - PTPRG ENSG00000144724 CDS Human protein_coding chr3:61734601 chr3:61734604 synonymous SNV . 0 24 hm5C_associated_SNPs_122238 0 0 0 0 1 PTPRG chr3:61734656 5'GT 61734656 Upstream 53bp
chr10 70980208 70980208 1 + T C UCEC 70980206 + 70980186 70980226 41 GGGAAAATGTTTGCGGTCCACTTGATGGCATTTTACTTCAG GGGAAAATGTTTGCGGTCCACTCGATGGCATTTTACTTCAG < 41bp 0.633621842259637 0.848353324607576 0.21900946 0.8348235 prediction 0.429462964695877 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:70980206 chr10:70980208 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_122241 0 0 0 0 1 HKDC1 chr10:70980254 5'GT 70980254 Upstream 47bp
chr1 156594455 156594455 1 + C A LIHC 156594454 + 156594434 156594474 41 CTCGAGGGCTCCGTGCGCTACCCTGTGCTCACCGCACGCGC CTCGAGGGCTCCGTGCGCTACACTGTGCTCACCGCACGCGC < 41bp 0.458908931765639 0.71473036839216 0.020857036 0.017225832 prediction 0.429460736784319 Functional Gain - HAPLN2 ENSG00000132702 CDS Human protein_coding chr1:156594454 chr1:156594455 nonsynonymous SNV 0.919 4 22 hm5C_associated_SNPs_122242 0 0 1 0 1 HAPLN2 chr1:156594393 3'AG 156594393 Downstream 63bp
chr3 190106228 190106228 1 + T C SKCM 190106225 + 190106205 190106245 41 GATGGTGAATGCTGATGACTCTCTGGAGGTAAGAAGATAGC GATGGTGAATGCTGATGACTCTCCGGAGGTAAGAAGATAGC < 41bp 0.521555549101381 0.736283426944505 0.09249687 0.18285054 prediction 0.429455755686249 Functional Gain - CLDN16 ENSG00000113946 CDS Human protein_coding chr3:190106225 chr3:190106228 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_122243 0 0 0 0 1 CLDN16 chr3:190106232 5'GT 190106232 Upstream 5bp
chr11 73102213 73102213 1 + C T LGG 73102212 + 73102192 73102232 41 GTTTGGGCCTTGGGGGGTTCCCCGCGTTCCATGTCAACCAT GTTTGGGCCTTGGGGGGTTCCTCGCGTTCCATGTCAACCAT < 41bp 0.597616219978883 0.812336859289444 0.40453327 0.22969717 prediction 0.429441278621123 Functional Gain - RELT ENSG00000054967 CDS Human protein_coding chr11:73102212 chr11:73102213 synonymous SNV . 0 22 hm5C_associated_SNPs_122246 0 0 1 0 2 RELT chr11:73102189 3'AG 73102189 Downstream 25bp
chr11 73102213 73102213 1 + C T LGG 73102212 + 73102192 73102232 41 GTTTGGGCCTTGGGGGGTTCCCCGCGTTCCATGTCAACCAT GTTTGGGCCTTGGGGGGTTCCTCGCGTTCCATGTCAACCAT < 41bp 0.597616219978883 0.812336859289444 0.40453327 0.22969717 prediction 0.429441278621123 Functional Gain - RELT ENSG00000054967 CDS Human protein_coding chr11:73102212 chr11:73102213 synonymous SNV . 0 22 hm5C_associated_SNPs_122246 0 0 1 0 2 RELT chr11:73102268 5'GT 73102268 Upstream 56bp
chr2 110049080 110049080 1 + C T UCEC 110049079 + 110049059 110049099 41 CAAGGGGGCGTCTCTGAGGACCGGGGTCTCTGGGGTGTTCC CAAGGGGGCGTCTCTGAGGACTGGGGTCTCTGGGGTGTTCC < 41bp 0.484221817169815 0.714719276365243 0.9054847 0.7245589 prediction 0.429438552730486 Functional Gain - SH3RF3 ENSG00000172985 CDS Human protein_coding chr2:110049079 chr2:110049080 synonymous SNV . 0 22 hm5C_associated_SNPs_122248 0 0 1 0 1 SH3RF3 chr2:110049127 5'GT 110049127 Upstream 48bp
chr1 57170074 57170074 1 + C T SKCM 57170073 + 57170053 57170093 41 GCCAAGTGGCATCTTGGAATCCGAAGTCAGAGCAAACCGTA GCCAAGTGGCATCTTGGAATCTGAAGTCAGAGCAAACCGTA < 41bp 0.585470856363665 0.800188743141002 0.27368924 0.21888548 prediction 0.429435773554674 Functional Gain - PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57170073 chr1:57170074 stopgain 0.998 1 22 hm5C_associated_SNPs_122249 0 0 1 0 1 PRKAA2 chr1:57170148 5'GT 57170148 Upstream 75bp
chr7 33573603 33573603 1 + T A rs142434516 33573599 + 33573579 33573619 41 CGGTGGATGCCGCCATTTCCCACCTGTTGAAGACTTGCCTG CGGTGGATGCCGCCATTTCCCACCAGTTGAAGACTTGCCTG < 41bp 0.663222638599427 0.877940292259493 0.08833149 0.2996443 prediction 0.429435307320132 Functional Gain - BBS9 ENSG00000122507 CDS Human protein_coding chr7:33573599 chr7:33573603 nonsynonymous SNV 0.987 4 25 hm5C_associated_SNPs_122250 1 0 0 1 1 BBS9 chr7:33573566 3'AG 33573566 Downstream 38bp
chr17 65732062 65732062 1 + T C UCEC 65732059 + 65732039 65732079 41 GTTTATGCTACATGGAAAATCTCTAACTGTGATTCCATACA GTTTATGCTACATGGAAAATCTCCAACTGTGATTCCATACA < 41bp 0.578799418063652 0.793513392630306 0.8746804 0.95021814 prediction 0.429427949133308 Functional Gain - NOL11 ENSG00000130935 CDS Human protein_coding chr17:65732059 chr17:65732062 nonsynonymous SNV 0.611 4 24 hm5C_associated_SNPs_122254 0 0 1 0 2 NOL11 chr17:65732016 3'AG 65732016 Downstream 47bp
chr17 65732062 65732062 1 + T C UCEC 65732059 + 65732039 65732079 41 GTTTATGCTACATGGAAAATCTCTAACTGTGATTCCATACA GTTTATGCTACATGGAAAATCTCCAACTGTGATTCCATACA < 41bp 0.578799418063652 0.793513392630306 0.8746804 0.95021814 prediction 0.429427949133308 Functional Gain - NOL11 ENSG00000130935 CDS Human protein_coding chr17:65732059 chr17:65732062 nonsynonymous SNV 0.611 4 24 hm5C_associated_SNPs_122254 0 0 1 0 2 NOL11 chr17:65732139 5'GT 65732139 Upstream 78bp
chr4 9452104 9452104 1 + A G STAD 9452101 + 9452081 9452121 41 TAAAGCCAGAAGCTTCATTTCTAATGATGAATGTCCTTCAG TAAAGCCAGAAGCTTCATTTCTAGTGATGAATGTCCTTCAG < 41bp 0.5056435596329 0.720355896781982 0.13090026 0.09781429 prediction 0.429424674298164 Functional Gain - DEFB131A ENSG00000186146 CDS Human protein_coding chr4:9452101 chr4:9452104 nonsynonymous SNV 0.035 0 24 hm5C_associated_SNPs_122255 0 0 0 0 1 DEFB131A chr4:9452086 3'AG 9452086 Downstream 19bp
chr13 29933456 29933456 1 + C A OV 29933455 + 29933435 29933475 41 GGTTTCCGCCCAAGCCGGACCCGCAGGCCCGTGAGGCTGAG GGTTTCCGCCCAAGCCGGACCAGCAGGCCCGTGAGGCTGAG < 41bp 0.473801464564768 0.714706648449125 0.065242946 0.09191331 prediction 0.429413296898249 Functional Gain - MTUS2 ENSG00000132938 CDS Human protein_coding chr13:29933455 chr13:29933456 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_122257 0 0 0 0 1 MTUS2 chr13:29933399 3'AG 29933399 Downstream 58bp
chr19 19990951 19990951 1 + C G rs77679830 19990950 + 19990930 19990970 41 ACATGAGATGATTGCCAAACCCCCAGGTAGGTACGAGTGAA ACATGAGATGATTGCCAAACCGCCAGGTAGGTACGAGTGAA < 41bp 0.640815645451719 0.855517609803928 0.06501436 0.26251668 prediction 0.429403928704418 Functional Gain - ZNF253 ENSG00000256771 CDS Human protein_coding chr19:19990950 chr19:19990951 synonymous SNV . 0 22 hm5C_associated_SNPs_122260 0 0 0 0 2 ZNF253 chr19:19990860 3'AG 19990860 Downstream 92bp
chr19 19990951 19990951 1 + C G rs77679830 19990950 + 19990930 19990970 41 ACATGAGATGATTGCCAAACCCCCAGGTAGGTACGAGTGAA ACATGAGATGATTGCCAAACCGCCAGGTAGGTACGAGTGAA < 41bp 0.640815645451719 0.855517609803928 0.06501436 0.26251668 prediction 0.429403928704418 Functional Gain - ZNF253 ENSG00000256771 CDS Human protein_coding chr19:19990950 chr19:19990951 synonymous SNV . 0 22 hm5C_associated_SNPs_122260 0 0 0 0 2 ZNF253 chr19:19990955 5'GT 19990955 Upstream 5bp
chr1 196643018 196643018 1 + T A ESCA 196643014 + 196642994 196643034 41 CTGTGGACATCCTGGAGATACTCCTTTTGGTACTTTTACCC CTGTGGACATCCTGGAGATACTCCATTTGGTACTTTTACCC < 41bp 0.358980854744222 0.714693436356476 0.013279557 0.95026267 prediction 0.429386872712952 Functional Gain - CFH ENSG00000000971 CDS Human protein_coding chr1:196643014 chr1:196643018 synonymous SNV . 0 25 hm5C_associated_SNPs_122262 0 0 1 0 2 CFH chr1:196642987 3'AG 196642987 Downstream 32bp
chr1 196643018 196643018 1 + T A ESCA 196643014 + 196642994 196643034 41 CTGTGGACATCCTGGAGATACTCCTTTTGGTACTTTTACCC CTGTGGACATCCTGGAGATACTCCATTTGGTACTTTTACCC < 41bp 0.358980854744222 0.714693436356476 0.013279557 0.95026267 prediction 0.429386872712952 Functional Gain - CFH ENSG00000000971 CDS Human protein_coding chr1:196643014 chr1:196643018 synonymous SNV . 0 25 hm5C_associated_SNPs_122262 0 0 1 0 2 CFH chr1:196643092 5'GT 196643092 Upstream 75bp
chr1 11775205 11775205 1 + T C LIHC 11775202 + 11775182 11775222 41 GCTGCGACCTGCGGGAGCATCTCTGCACACCCCACAACCGA GCTGCGACCTGCGGGAGCATCTCCGCACACCCCACAACCGA < 41bp 0.539142205003081 0.753832667683589 0.13189828 0.48647496 prediction 0.429380925361015 Functional Gain - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11775202 chr1:11775205 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_122264 0 0 0 0 2 DRAXIN chr1:11775176 3'AG 11775176 Downstream 30bp
chr1 11775205 11775205 1 + T C LIHC 11775202 + 11775182 11775222 41 GCTGCGACCTGCGGGAGCATCTCTGCACACCCCACAACCGA GCTGCGACCTGCGGGAGCATCTCCGCACACCCCACAACCGA < 41bp 0.539142205003081 0.753832667683589 0.13189828 0.48647496 prediction 0.429380925361015 Functional Gain - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11775202 chr1:11775205 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_122264 0 0 0 0 2 DRAXIN chr1:11775265 5'GT 11775265 Upstream 61bp
chr20 31825963 31825963 1 + T A HNSC 31825959 + 31825939 31825979 41 GAGGAGGTACTTCTGGTGGCCTCCTTGGGGGACTGCTTGGA GAGGAGGTACTTCTGGTGGCCTCCATGGGGGACTGCTTGGA < 41bp 0.360065118526706 0.714689067244823 0.20722207 0.9571805 prediction 0.429378134489647 Functional Gain - BPIFA1 ENSG00000198183 CDS Human protein_coding chr20:31825959 chr20:31825963 nonsynonymous SNV 0.641 1 25 hm5C_associated_SNPs_122265 0 0 0 0 1 BPIFA1 chr20:31826020 5'GT 31826020 Upstream 58bp
chr13 33241943 33241943 1 + A G LIHC 33241940 + 33241920 33241960 41 ATGATTTGGCAAAGGCTTTACTGAAGAGGACAGCTCAAGCT ATGATTTGGCAAAGGCTTTACTGGAGAGGACAGCTCAAGCT < 41bp 0.518815609941355 0.733487180391616 0.10724071 0.24236059 prediction 0.429343140900522 Functional Gain - PDS5B ENSG00000083642 CDS Human protein_coding chr13:33241940 chr13:33241943 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_122270 0 0 1 0 2 PDS5B chr13:33241901 3'AG 33241901 Downstream 43bp
chr13 33241943 33241943 1 + A G LIHC 33241940 + 33241920 33241960 41 ATGATTTGGCAAAGGCTTTACTGAAGAGGACAGCTCAAGCT ATGATTTGGCAAAGGCTTTACTGGAGAGGACAGCTCAAGCT < 41bp 0.518815609941355 0.733487180391616 0.10724071 0.24236059 prediction 0.429343140900522 Functional Gain - PDS5B ENSG00000083642 CDS Human protein_coding chr13:33241940 chr13:33241943 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_122270 0 0 1 0 2 PDS5B chr13:33241981 5'GT 33241981 Upstream 39bp
chrX 10085204 10085204 1 + C T COAD 10085203 + 10085183 10085223 41 ACGGTGTCCTCGGGGAGCAGCCGCGGGTCCCTAGCCTCCAG ACGGTGTCCTCGGGGAGCAGCTGCGGGTCCCTAGCCTCCAG < 41bp 0.576905749856317 0.791567287059065 0.94970226 0.9351412 prediction 0.429323074405495 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10085203 chrX:10085204 nonsynonymous SNV 0.964 4 22 hm5C_associated_SNPs_122273 0 0 0 0 1 WWC3 chrX:10085164 3'AG 10085164 Downstream 41bp
chr6 96034832 96034832 1 + A G STAD 96034829 + 96034809 96034849 41 ATCCTTCTGTCATAGAAACTCACATGAGACAAATGCGCTCA ATCCTTCTGTCATAGAAACTCACGTGAGACAAATGCGCTCA < 41bp 0.516734275352124 0.731394412035723 0.19153172 0.36305958 prediction 0.429320273367196 Functional Gain - MANEA ENSG00000172469 CDS Human protein_coding chr6:96034829 chr6:96034832 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_122274 0 0 1 0 1 MANEA chr6:96034859 5'GT 96034859 Upstream 28bp
chr22 40075761 40075761 1 + T C STAD 40075759 + 40075739 40075779 41 CTGGACAGCGTCTCTTTAATCATCAAGGACTCCTTGGAGGG CTGGACAGCGTCTCTTTAATCACCAAGGACTCCTTGGAGGG < 41bp 0.425140957439827 0.714655757175892 0.1785202 0.2973882 prediction 0.429311514351784 Functional Gain - CACNA1I ENSG00000100346 CDS Human protein_coding chr22:40075759 chr22:40075761 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_122277 0 0 0 0 1 CACNA1I chr22:40075727 3'AG 40075727 Downstream 35bp
chr7 36193266 36193266 1 + C G rs142018965 36193265 + 36193245 36193285 41 GGTGGAAGAGGAACCGGCGCCCCGCAGAGCGGCCGAGAGGT GGTGGAAGAGGAACCGGCGCCGCGCAGAGCGGCCGAGAGGT < 41bp 0.462034078768599 0.714655577475503 0.16659483 0.35961437 prediction 0.429311154951007 Functional Gain - EEPD1 ENSG00000122547 UTR5 Human protein_coding chr7:36193265 chr7:36193266 . . 0 22 hm5C_associated_SNPs_122278 0 0 0 0 1 EEPD1 chr7:36193283 5'GT 36193283 Upstream 18bp
chr11 67163640 67163640 1 + C G BLCA 67163639 + 67163619 67163659 41 TTAGCATTCATTTTGATGCTCCAGGCAGGTAGTTCCCAGCC TTAGCATTCATTTTGATGCTCGAGGCAGGTAGTTCCCAGCC < 41bp 0.384506060808799 0.714653407742946 0.19907841 0.56799555 prediction 0.429306815485892 Functional Gain - RAD9A ENSG00000172613 CDS Human protein_coding chr11:67163639 chr11:67163640 nonsynonymous SNV 0.987 4 22 hm5C_associated_SNPs_122280 0 0 1 0 2 RAD9A chr11:67163582 3'AG 67163582 Downstream 59bp
chr11 67163640 67163640 1 + C G BLCA 67163639 + 67163619 67163659 41 TTAGCATTCATTTTGATGCTCCAGGCAGGTAGTTCCCAGCC TTAGCATTCATTTTGATGCTCGAGGCAGGTAGTTCCCAGCC < 41bp 0.384506060808799 0.714653407742946 0.19907841 0.56799555 prediction 0.429306815485892 Functional Gain - RAD9A ENSG00000172613 CDS Human protein_coding chr11:67163639 chr11:67163640 nonsynonymous SNV 0.987 4 22 hm5C_associated_SNPs_122280 0 0 1 0 2 RAD9A chr11:67163646 5'GT 67163646 Upstream 7bp
chr12 6634767 6634767 1 + A G CESC 6634764 + 6634744 6634784 41 TTTAGCTCTGTGAGTTTGTGCAGAAGGATGAGTTGAAACCA TTTAGCTCTGTGAGTTTGTGCAGGAGGATGAGTTGAAACCA < 41bp 0.593050180659453 0.807699242586012 0.45648137 0.8746688 prediction 0.429298123853118 Functional Gain - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6634764 chr12:6634767 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_122282 0 0 1 0 1 NCAPD2 chr12:6634749 3'AG 6634749 Downstream 19bp
chr20 60861650 60861650 1 + C T PAAD 60861649 + 60861629 60861669 41 TGTGTTTCAGGATGAAGACTCCGGGAAGGCTGACAGCGACG TGTGTTTCAGGATGAAGACTCTGGGAAGGCTGACAGCGACG < 41bp 0.553604978507357 0.768252310159223 0.42525768 0.407819 prediction 0.429294663303732 Functional Gain - OSBPL2 ENSG00000130703 CDS Human protein_coding chr20:60861649 chr20:60861650 synonymous SNV . 0 22 hm5C_associated_SNPs_122283 0 0 1 0 1 OSBPL2 chr20:60861639 3'AG 60861639 Downstream 12bp
chr14 21461280 21461280 1 + C T UCEC 21461279 + 21461259 21461299 41 TGTTGTATATTTCTTCAGATCCGGGCTCGAAATCCAGCATT TGTTGTATATTTCTTCAGATCTGGGCTCGAAATCCAGCATT < 41bp 0.564629605335363 0.779266741003454 0.7617363 0.29682782 prediction 0.429274271336183 Functional Gain - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21461279 chr14:21461280 nonsynonymous SNV 0.916 2 22 hm5C_associated_SNPs_122286 0 0 1 0 2 METTL17 chr14:21461277 3'AG 21461277 Downstream 4bp
chr14 21461280 21461280 1 + C T UCEC 21461279 + 21461259 21461299 41 TGTTGTATATTTCTTCAGATCCGGGCTCGAAATCCAGCATT TGTTGTATATTTCTTCAGATCTGGGCTCGAAATCCAGCATT < 41bp 0.564629605335363 0.779266741003454 0.7617363 0.29682782 prediction 0.429274271336183 Functional Gain - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21461279 chr14:21461280 nonsynonymous SNV 0.916 2 22 hm5C_associated_SNPs_122286 0 0 1 0 2 METTL17 chr14:21461350 5'GT 21461350 Upstream 71bp
chr12 1755046 1755046 1 + C T KIRC 1755045 + 1755025 1755065 41 GACCTGCTGGCTGCAGCTGGCCGAGTTCCGCAAGGTCGGGG GACCTGCTGGCTGCAGCTGGCTGAGTTCCGCAAGGTCGGGG < 41bp 0.564446072143022 0.779080386964697 0.83287066 0.68969035 prediction 0.42926862964335 Functional Gain - WNT5B ENSG00000111186 CDS Human protein_coding chr12:1755045 chr12:1755046 synonymous SNV . 0 22 hm5C_associated_SNPs_122287 0 0 0 0 1 WNT5B chr12:1754960 3'AG 1754960 Downstream 87bp
chr19 56379228 56379228 1 + C A LUSC 56379224 + 56379204 56379244 41 AGCCCTGTGCAGCCCAGACACGGTCCTGGTATACCTGATGT AGCCCTGTGCAGCCCAGACACGGTACTGGTATACCTGATGT < 41bp 0.30549052660655 0.714616109355314 0.40005624 0.8822005 prediction 0.429232218710627 Functional Gain - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56379224 chr19:56379228 synonymous SNV . 0 25 hm5C_associated_SNPs_122293 0 0 0 0 1 NLRP4 chr19:56379242 5'GT 56379242 Upstream 15bp
chr15 72691081 72691081 1 + C T CESC 72691080 + 72691060 72691100 41 GATCAGGCACACATCTACATCCGAACGCTCTGTGGCAGCCT GATCAGGCACACATCTACATCTGAACGCTCTGTGGCAGCCT < 41bp 0.591174156747345 0.805787152200773 0.0928407 0.033904433 prediction 0.429225990906855 Functional Gain - TMEM202 ENSG00000187806 CDS Human protein_coding chr15:72691080 chr15:72691081 stopgain 0.022 0 22 hm5C_associated_SNPs_122294 0 0 0 0 1 TMEM202 chr15:72690994 3'AG 72690994 Downstream 88bp
chr7 100674447 100674447 1 + C A LUSC 100674446 + 100674426 100674466 41 GGATGGAGGAGGGTGCATCTCCCAAGGGGACGTCTTGAACC GGATGGAGGAGGGTGCATCTCACAAGGGGACGTCTTGAACC < 41bp 0.47050744559959 0.714604136904787 0.1227555 0.15301254 prediction 0.429208273809574 Functional Gain - MUC17 ENSG00000169876 CDS Human protein_coding chr7:100674446 chr7:100674447 synonymous SNV . 0 22 hm5C_associated_SNPs_122299 0 0 0 0 2 MUC17 chr7:100674401 3'AG 100674401 Downstream 47bp
chr7 100674447 100674447 1 + C A LUSC 100674446 + 100674426 100674466 41 GGATGGAGGAGGGTGCATCTCCCAAGGGGACGTCTTGAACC GGATGGAGGAGGGTGCATCTCACAAGGGGACGTCTTGAACC < 41bp 0.47050744559959 0.714604136904787 0.1227555 0.15301254 prediction 0.429208273809574 Functional Gain - MUC17 ENSG00000169876 CDS Human protein_coding chr7:100674446 chr7:100674447 synonymous SNV . 0 22 hm5C_associated_SNPs_122299 0 0 0 0 2 MUC17 chr7:100674502 5'GT 100674502 Upstream 56bp
chr7 66103872 66103872 1 + C T UCEC 66103871 + 66103851 66103891 41 GAGCGGATTGTGGAGATCGCCCGGCTGCGTGCGGTCCAGCG GAGCGGATTGTGGAGATCGCCTGGCTGCGTGCGGTCCAGCG < 41bp 0.553138195785023 0.767741805625205 0.35809767 0.34451503 prediction 0.429207219680364 Functional Gain - KCTD7 ENSG00000243335 CDS Human protein_coding chr7:66103871 chr7:66103872 nonsynonymous SNV 0.981 2 22 hm5C_associated_SNPs_122300 0 0 1 0 2 KCTD7 chr7:66103843 3'AG 66103843 Downstream 30bp
chr7 66103872 66103872 1 + C T UCEC 66103871 + 66103851 66103891 41 GAGCGGATTGTGGAGATCGCCCGGCTGCGTGCGGTCCAGCG GAGCGGATTGTGGAGATCGCCTGGCTGCGTGCGGTCCAGCG < 41bp 0.553138195785023 0.767741805625205 0.35809767 0.34451503 prediction 0.429207219680364 Functional Gain - KCTD7 ENSG00000243335 CDS Human protein_coding chr7:66103871 chr7:66103872 nonsynonymous SNV 0.981 2 22 hm5C_associated_SNPs_122300 0 0 1 0 2 KCTD7 chr7:66103916 5'GT 66103916 Upstream 45bp
chr8 48878917 48878917 1 + C T SKCM 48878916 + 48878896 48878936 41 TGCGGGCGCTGCCACACCACCCACAGCATGGCACTCATCCA TGCGGGCGCTGCCACACCACCTACAGCATGGCACTCATCCA < 41bp 0.436836163932294 0.714594225211001 0.012917459 0.071217775 prediction 0.429188450422002 Functional Gain - MCM4 ENSG00000104738 CDS Human protein_coding chr8:48878916 chr8:48878917 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_122302 0 0 1 0 1 MCM4 chr8:48878967 5'GT 48878967 Upstream 51bp
chr6 139164210 139164210 1 + T C rs76700722 139164208 + 139164188 139164228 41 GGTGCTTGGAAGCGCCATTACATTGCTTGTGTGTCCCACTT GGTGCTTGGAAGCGCCATTACACTGCTTGTGTGTCCCACTT < 41bp 0.425732440425265 0.714576993607197 0.023938507 0.018608928 prediction 0.429153987214393 Functional Gain - ECT2L ENSG00000203734 CDS Human protein_coding chr6:139164208 chr6:139164210 nonsynonymous SNV 0.972 1 23 hm5C_associated_SNPs_122310 1 0 1 0 1 ECT2L chr6:139164116 3'AG 139164116 Downstream 95bp
chr15 25425532 25425532 1 + T A LUSC 25425528 + 25425508 25425548 41 TCTCTCAGCCATGTGCTCAACACCTGGTGAGCTGAAGCTCA TCTCTCAGCCATGTGCTCAACACCAGGTGAGCTGAAGCTCA < 41bp 0.430052519495848 0.714567556254198 0.22871155 0.29470468 prediction 0.429135112508395 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25425528 chr15:25425532 . . 0 25 hm5C_associated_SNPs_122318 0 0 0 3 2 SNHG14 chr15:25425456 3'AG 25425456 Downstream 77bp
chr15 25425532 25425532 1 + T A LUSC 25425528 + 25425508 25425548 41 TCTCTCAGCCATGTGCTCAACACCTGGTGAGCTGAAGCTCA TCTCTCAGCCATGTGCTCAACACCAGGTGAGCTGAAGCTCA < 41bp 0.430052519495848 0.714567556254198 0.22871155 0.29470468 prediction 0.429135112508395 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25425528 chr15:25425532 . . 0 25 hm5C_associated_SNPs_122318 0 0 0 3 2 SNHG14 chr15:25425587 5'GT 25425587 Upstream 56bp
chr11 66318782 66318782 1 + C T UCEC 66318781 + 66318761 66318801 41 GAGAACATCGAGGAAGATTTCCGCAATGGCCTCAAACTCAT GAGAACATCGAGGAAGATTTCTGCAATGGCCTCAAACTCAT < 41bp 0.59632795919205 0.810890687912952 0.1131542 0.26592654 prediction 0.429125457441804 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66318781 chr11:66318782 unknown 1.000 0 22 hm5C_associated_SNPs_122320 0 0 0 0 2 ACTN3 chr11:66318710 3'AG 66318710 Downstream 73bp
chr11 66318782 66318782 1 + C T UCEC 66318781 + 66318761 66318801 41 GAGAACATCGAGGAAGATTTCCGCAATGGCCTCAAACTCAT GAGAACATCGAGGAAGATTTCTGCAATGGCCTCAAACTCAT < 41bp 0.59632795919205 0.810890687912952 0.1131542 0.26592654 prediction 0.429125457441804 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66318781 chr11:66318782 unknown 1.000 0 22 hm5C_associated_SNPs_122320 0 0 0 0 2 ACTN3 chr11:66318824 5'GT 66318824 Upstream 43bp
chr6 42883861 42883861 1 + C G LUAD 42883860 + 42883840 42883880 41 CCTTGGGTGTCCAGCCCTACCCACAGGTGAGCCCCCTCTTT CCTTGGGTGTCCAGCCCTACCGACAGGTGAGCCCCCTCTTT < 41bp 0.668525587241555 0.883087370742801 0.30384177 0.57745486 prediction 0.429123567002492 Functional Gain - PTCRA ENSG00000171611 CDS Human protein_coding chr6:42883860 chr6:42883861 synonymous SNV . 0 22 hm5C_associated_SNPs_122321 0 0 0 0 1 PTCRA chr6:42883865 5'GT 42883865 Upstream 5bp
chr9 35809175 35809175 1 + T C UCEC 35809172 + 35809152 35809192 41 GCGCTGAAGATCCATGTCTCCTCTACCACCAAGGATGCCCT GCGCTGAAGATCCATGTCTCCTCCACCACCAAGGATGCCCT < 41bp 0.489673110330488 0.714556258412816 0.44753966 0.733061 prediction 0.429112516825632 Functional Gain - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35809172 chr9:35809175 synonymous SNV . 0 24 hm5C_associated_SNPs_122322 0 0 1 0 2 NPR2 chr9:35809153 3'AG 35809153 Downstream 23bp
chr9 35809175 35809175 1 + T C UCEC 35809172 + 35809152 35809192 41 GCGCTGAAGATCCATGTCTCCTCTACCACCAAGGATGCCCT GCGCTGAAGATCCATGTCTCCTCCACCACCAAGGATGCCCT < 41bp 0.489673110330488 0.714556258412816 0.44753966 0.733061 prediction 0.429112516825632 Functional Gain - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35809172 chr9:35809175 synonymous SNV . 0 24 hm5C_associated_SNPs_122322 0 0 1 0 2 NPR2 chr9:35809244 5'GT 35809244 Upstream 70bp
chr9 139973875 139973875 1 + C T STAD 139973874 + 139973854 139973894 41 CATCTGCAACCACTTCTTCACCCGAGGCTTCCTTAAGGCGG CATCTGCAACCACTTCTTCACTCGAGGCTTCCTTAAGGCGG < 41bp 0.626692394887922 0.841245994920726 0.23963737 0.5417127 prediction 0.429107200065608 Functional Gain - UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139973874 chr9:139973875 synonymous SNV . 0 22 hm5C_associated_SNPs_122323 0 0 0 0 1 UAP1L1 chr9:139973901 5'GT 139973901 Upstream 27bp
chr15 100211568 100211568 1 + A G COAD 100211565 + 100211545 100211585 41 CCTTAATGGTTGTGAGAGCCCTGATGCTGACGATTACTTTG CCTTAATGGTTGTGAGAGCCCTGGTGCTGACGATTACTTTG < 41bp 0.541732235226914 0.756285123069635 0.19222462 0.3035997 prediction 0.429105775685441 Functional Gain - MEF2A ENSG00000068305 CDS Human protein_coding chr15:100211565 chr15:100211568 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_122324 0 0 1 0 2 MEF2A chr15:100211528 3'AG 100211528 Downstream 41bp
chr15 100211568 100211568 1 + A G COAD 100211565 + 100211545 100211585 41 CCTTAATGGTTGTGAGAGCCCTGATGCTGACGATTACTTTG CCTTAATGGTTGTGAGAGCCCTGGTGCTGACGATTACTTTG < 41bp 0.541732235226914 0.756285123069635 0.19222462 0.3035997 prediction 0.429105775685441 Functional Gain - MEF2A ENSG00000068305 CDS Human protein_coding chr15:100211565 chr15:100211568 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_122324 0 0 1 0 2 MEF2A chr15:100211659 5'GT 100211659 Upstream 92bp
chr8 145746374 145746374 1 + A G STAD 145746371 + 145746351 145746391 41 AGGACCTACGCTTCCTGGCACGGAGCCCACATGCTGCCCAC AGGACCTACGCTTCCTGGCACGGGGCCCACATGCTGCCCAC < 41bp 0.599693310366931 0.81424330665054 0.63615155 0.9215249 prediction 0.429099992567218 Functional Gain - LRRC14 ENSG00000160959 CDS Human protein_coding chr8:145746371 chr8:145746374 nonsynonymous SNV 0.111 4 24 hm5C_associated_SNPs_122325 0 0 1 0 1 LRRC14 chr8:145746295 3'AG 145746295 Downstream 80bp
chr7 99447243 99447243 1 + C T SKCM 99447242 + 99447222 99447262 41 ACTTGGATTCTCTCAACAATCCACAAGATCCCTTTCTGAAA ACTTGGATTCTCTCAACAATCTACAAGATCCCTTTCTGAAA < 41bp 0.461637112235558 0.714548453130431 0.059464574 0.81466985 prediction 0.429096906260861 Functional Gain - CYP3A43 ENSG00000021461 CDS Human protein_coding chr7:99447242 chr7:99447243 nonsynonymous SNV 0.201 4 22 hm5C_associated_SNPs_122326 0 0 0 0 2 CYP3A43 chr7:99447169 3'AG 99447169 Downstream 75bp
chr7 99447243 99447243 1 + C T SKCM 99447242 + 99447222 99447262 41 ACTTGGATTCTCTCAACAATCCACAAGATCCCTTTCTGAAA ACTTGGATTCTCTCAACAATCTACAAGATCCCTTTCTGAAA < 41bp 0.461637112235558 0.714548453130431 0.059464574 0.81466985 prediction 0.429096906260861 Functional Gain - CYP3A43 ENSG00000021461 CDS Human protein_coding chr7:99447242 chr7:99447243 nonsynonymous SNV 0.201 4 22 hm5C_associated_SNPs_122326 0 0 0 0 2 CYP3A43 chr7:99447317 5'GT 99447317 Upstream 75bp
chr7 128496629 128496629 1 + C T LUAD 128496628 + 128496608 128496648 41 GCCGTGCAGCTGAACGGTGCCCGGGGCGTGATTGATGCCCG GCCGTGCAGCTGAACGGTGCCTGGGGCGTGATTGATGCCCG < 41bp 0.488313712163902 0.714548019682475 0.61261344 0.8218261 prediction 0.429096039364951 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128496628 chr7:128496629 nonsynonymous SNV 0.015 5 22 hm5C_associated_SNPs_122327 0 0 1 0 2 FLNC chr7:128496572 3'AG 128496572 Downstream 58bp
chr7 128496629 128496629 1 + C T LUAD 128496628 + 128496608 128496648 41 GCCGTGCAGCTGAACGGTGCCCGGGGCGTGATTGATGCCCG GCCGTGCAGCTGAACGGTGCCTGGGGCGTGATTGATGCCCG < 41bp 0.488313712163902 0.714548019682475 0.61261344 0.8218261 prediction 0.429096039364951 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128496628 chr7:128496629 nonsynonymous SNV 0.015 5 22 hm5C_associated_SNPs_122327 0 0 1 0 2 FLNC chr7:128496704 5'GT 128496704 Upstream 76bp
chr9 135919202 135919202 1 + C T SKCM 135919201 + 135919181 135919221 41 ACAAGGTGCTCATGCTCCGGCCCGAGAAGGAGGCCTTTTTC ACAAGGTGCTCATGCTCCGGCTCGAGAAGGAGGCCTTTTTC < 41bp 0.632214916969305 0.846751610578722 0.49348307 0.49849012 prediction 0.429073387218832 Functional Gain - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919201 chr9:135919202 nonsynonymous SNV 0.444 0 22 hm5C_associated_SNPs_122332 0 0 1 0 1 GTF3C5 chr9:135919115 3'AG 135919115 Downstream 88bp
chr1 12919618 12919618 1 + T A rs200248611 12919616 + 12919596 12919636 41 CTGGGCCAGATGGCCTGGAGCCTGGGCCCTGTCCTGCTTCC CTGGGCCAGATGGCCTGGAGCCAGGGCCCTGTCCTGCTTCC < 41bp 0.511614184302582 0.726150476249073 0.7483998 0.91898894 prediction 0.429072583892982 Functional Gain - PRAMEF2 ENSG00000120952 CDS Human protein_coding chr1:12919616 chr1:12919618 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_122333 0 0 0 0 1 PRAMEF2 chr1:12919548 3'AG 12919548 Downstream 71bp
chr16 2577863 2577863 1 + C T BLCA 2577862 + 2577842 2577882 41 TCCTTCGAGGCCGATGCCTTCCAGGACTTGCTGGCCACCTA TCCTTCGAGGCCGATGCCTTCTAGGACTTGCTGGCCACCTA < 41bp 0.589500890351042 0.804033631303891 0.79219997 0.73394114 prediction 0.429065481905698 Functional Gain - AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2577862 chr16:2577863 stopgain 0.571 0 22 hm5C_associated_SNPs_122334 0 0 1 0 1 AMDHD2 chr16:2577774 3'AG 2577774 Downstream 90bp
chr21 43529725 43529725 1 + T A LIHC 43529721 + 43529701 43529741 41 CACGACTGCTCACCGGCTGCCTGGTGCATCAACCTGGAGGG CACGACTGCTCACCGGCTGCCTGGAGCATCAACCTGGAGGG < 41bp 0.668594483320326 0.883125909338259 0.50013614 0.6554388 prediction 0.429062852035867 Functional Gain - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43529721 chr21:43529725 nonsynonymous SNV 0.520 5 25 hm5C_associated_SNPs_122336 0 0 0 0 1 UMODL1 chr21:43529672 3'AG 43529672 Downstream 54bp
chr2 220044464 220044464 1 + C T SKCM 220044463 + 220044443 220044483 41 CTCTCTCTCTAGCATCATCCCCAGAGGAGCCACACTCTGAC CTCTCTCTCTAGCATCATCCCTAGAGGAGCCACACTCTGAC < 41bp 0.62149890691228 0.836026330360992 0.4550883 0.19008765 prediction 0.429054846897424 Functional Gain - RETREG2 ENSG00000144567 CDS Human protein_coding chr2:220044463 chr2:220044464 nonsynonymous SNV 0.879 1 22 hm5C_associated_SNPs_122337 0 0 1 0 2 RETREG2 chr2:220044455 3'AG 220044455 Downstream 10bp
chr2 220044464 220044464 1 + C T SKCM 220044463 + 220044443 220044483 41 CTCTCTCTCTAGCATCATCCCCAGAGGAGCCACACTCTGAC CTCTCTCTCTAGCATCATCCCTAGAGGAGCCACACTCTGAC < 41bp 0.62149890691228 0.836026330360992 0.4550883 0.19008765 prediction 0.429054846897424 Functional Gain - RETREG2 ENSG00000144567 CDS Human protein_coding chr2:220044463 chr2:220044464 nonsynonymous SNV 0.879 1 22 hm5C_associated_SNPs_122337 0 0 1 0 2 RETREG2 chr2:220044485 5'GT 220044485 Upstream 22bp
chr16 28841265 28841265 1 + C A UCEC 28841264 + 28841244 28841284 41 CTCGAGAGATTGAATCAAGCCCCCAGTACCGCCTACGGATC CTCGAGAGATTGAATCAAGCCACCAGTACCGCCTACGGATC < 41bp 0.602308848629451 0.816834312704369 0.054626465 0.036655158 prediction 0.429050928149836 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28841264 chr16:28841265 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_122338 0 0 1 0 1 ATXN2L chr16:28841190 3'AG 28841190 Downstream 76bp
chr21 44182246 44182246 1 + C T BLCA 44182245 + 44182225 44182265 41 TCCGCTACAATGACATCTCACCGCTGGAGAACCACCACTGC TCCGCTACAATGACATCTCACTGCTGGAGAACCACCACTGC < 41bp 0.556390873650558 0.770913482588871 0.29536474 0.25319004 prediction 0.429045217876626 Functional Gain - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44182245 chr21:44182246 nonsynonymous SNV 0.407 3 22 hm5C_associated_SNPs_122341 0 0 0 0 1 PDE9A chr21:44182193 3'AG 44182193 Downstream 54bp
chr4 3446682 3446682 1 + C T rs144021102 3446681 + 3446661 3446701 41 GCACGTGGACTCCGTGGGCGCCGCGGCCCTGCTGGGCCTGG GCACGTGGACTCCGTGGGCGCTGCGGCCCTGCTGGGCCTGG < 41bp 0.535533257012251 0.750048927327779 0.6490726 0.36508197 prediction 0.429031340631056 Functional Gain - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3446681 chr4:3446682 synonymous SNV . 0 22 hm5C_associated_SNPs_122345 0 0 1 0 1 HGFAC chr4:3446720 5'GT 3446720 Upstream 39bp
chr16 89702980 89702980 1 + T C UCEC 89702978 + 89702958 89702998 41 CGGGAAGGGAAGGTGGCCAGCCTGATCGGCGTGGAGGGCGG CGGGAAGGGAAGGTGGCCAGCCCGATCGGCGTGGAGGGCGG < 41bp 0.634426196509626 0.848939475964118 0.7453613 0.6823628 prediction 0.429026558908983 Functional Gain - DPEP1 ENSG00000015413 CDS Human protein_coding chr16:89702978 chr16:89702980 nonsynonymous SNV 0.875 4 23 hm5C_associated_SNPs_122347 0 0 0 0 1 DPEP1 chr16:89702941 3'AG 89702941 Downstream 40bp
chr20 48565822 48565822 1 + C A THCA 48565821 + 48565801 48565841 41 CCTCGATGCCCTGGGGAGACCCCAACTACCGCAGCGCCAAC CCTCGATGCCCTGGGGAGACCACAACTACCGCAGCGCCAAC < 41bp 0.613263895806735 0.827770762903764 0.34456116 0.3508347 prediction 0.429013734194058 Functional Gain - RNF114 ENSG00000124226 CDS Human protein_coding chr20:48565821 chr20:48565822 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_122349 0 0 1 0 2 RNF114 chr20:48565785 3'AG 48565785 Downstream 38bp
chr20 48565822 48565822 1 + C A THCA 48565821 + 48565801 48565841 41 CCTCGATGCCCTGGGGAGACCCCAACTACCGCAGCGCCAAC CCTCGATGCCCTGGGGAGACCACAACTACCGCAGCGCCAAC < 41bp 0.613263895806735 0.827770762903764 0.34456116 0.3508347 prediction 0.429013734194058 Functional Gain - RNF114 ENSG00000124226 CDS Human protein_coding chr20:48565821 chr20:48565822 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_122349 0 0 1 0 2 RNF114 chr20:48565892 5'GT 48565892 Upstream 71bp
chr19 17387324 17387324 1 + C T STAD 17387323 + 17387303 17387343 41 GCCAGCAGAAAACTGAGCTTCCGGTCACAGAGAACGTGCAG GCCAGCAGAAAACTGAGCTTCTGGTCACAGAGAACGTGCAG < 41bp 0.557025480348174 0.771532191567149 0.22952244 0.1880669 prediction 0.429013422437951 Functional Gain - BABAM1 ENSG00000105393;ENSG00000269307 CDS Human other chr19:17387323 chr19:17387324 nonsynonymous SNV 0.918 4 22 hm5C_associated_SNPs_122350 0 0 1 0 1 BABAM1 chr19:17387304 3'AG 17387304 Downstream 21bp
chr11 125791155 125791155 1 + A G UCEC 125791152 + 125791132 125791172 41 TGTAAAACAAGGAGAGGAGCCGGACTATGAGACCTACCTCC TGTAAAACAAGGAGAGGAGCCGGGCTATGAGACCTACCTCC < 41bp 0.583230629222417 0.797726995723537 0.4982635 0.83328515 prediction 0.428992733002239 Functional Gain - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125791152 chr11:125791155 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_122353 0 0 0 0 1 DDX25 chr11:125791086 3'AG 125791086 Downstream 70bp
chr19 55857907 55857907 1 + C T COAD 55857906 + 55857886 55857926 41 CCGAACCAGGCCTAGGGAGCCCGCGTTGCCACCACGGCCCC CCGAACCAGGCCTAGGGAGCCTGCGTTGCCACCACGGCCCC < 41bp 0.594489239708827 0.808976234603132 0.34175968 0.2307393 prediction 0.42897398978861 Functional Gain - KMT5C ENSG00000133247 CDS Human protein_coding chr19:55857906 chr19:55857907 synonymous SNV . 0 22 hm5C_associated_SNPs_122358 0 0 1 0 1 KMT5C chr19:55857868 3'AG 55857868 Downstream 40bp
chr1 32694780 32694780 1 + C A UCS 32694776 + 32694756 32694796 41 GGAAGCCATGGATGTAACCACAACCTCCACCAGGATTGGCA GGAAGCCATGGATGTAACCACAACATCCACCAGGATTGGCA < 41bp 0.28712805114351 0.714485079487798 0.22003627 0.31273282 prediction 0.428970158975597 Functional Gain - EIF3I ENSG00000084623 CDS Human protein_coding chr1:32694776 chr1:32694780 synonymous SNV . 0 25 hm5C_associated_SNPs_122360 0 0 1 0 2 EIF3I chr1:32694736 3'AG 32694736 Downstream 45bp
chr1 32694780 32694780 1 + C A UCS 32694776 + 32694756 32694796 41 GGAAGCCATGGATGTAACCACAACCTCCACCAGGATTGGCA GGAAGCCATGGATGTAACCACAACATCCACCAGGATTGGCA < 41bp 0.28712805114351 0.714485079487798 0.22003627 0.31273282 prediction 0.428970158975597 Functional Gain - EIF3I ENSG00000084623 CDS Human protein_coding chr1:32694776 chr1:32694780 synonymous SNV . 0 25 hm5C_associated_SNPs_122360 0 0 1 0 2 EIF3I chr1:32694809 5'GT 32694809 Upstream 30bp
chr10 27456128 27456128 1 + T C COAD 27456125 + 27456105 27456145 41 AGGCTGGCCACATCCAGTGCCAGTAGTCAATCCCACACCTT AGGCTGGCCACATCCAGTGCCAGCAGTCAATCCCACACCTT < 41bp 0.526703643053084 0.741181310118972 0.18501699 0.30917126 prediction 0.428955334131775 Functional Gain - MASTL ENSG00000120539 CDS Human protein_coding chr10:27456125 chr10:27456128 synonymous SNV . 0 24 hm5C_associated_SNPs_122363 0 0 1 0 2 MASTL chr10:27456031 3'AG 27456031 Downstream 98bp
chr10 27456128 27456128 1 + T C COAD 27456125 + 27456105 27456145 41 AGGCTGGCCACATCCAGTGCCAGTAGTCAATCCCACACCTT AGGCTGGCCACATCCAGTGCCAGCAGTCAATCCCACACCTT < 41bp 0.526703643053084 0.741181310118972 0.18501699 0.30917126 prediction 0.428955334131775 Functional Gain - MASTL ENSG00000120539 CDS Human protein_coding chr10:27456125 chr10:27456128 synonymous SNV . 0 24 hm5C_associated_SNPs_122363 0 0 1 0 2 MASTL chr10:27456203 5'GT 27456203 Upstream 76bp
chr6 161137791 161137791 1 + C A COAD 161137787 + 161137767 161137807 41 CTGGGAACTTTGTGACATCCCCCGCTGCAGTGAGTATGATG CTGGGAACTTTGTGACATCCCCCGATGCAGTGAGTATGATG < 41bp 0.299867743647361 0.714475658173288 0.009195149 0.022436291 prediction 0.428951316346575 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161137787 chr6:161137791 synonymous SNV . 0 25 hm5C_associated_SNPs_122366 0 0 0 0 1 PLG chr6:161137795 5'GT 161137795 Upstream 5bp
chr14 105964989 105964989 1 + C T UCEC 105964988 + 105964968 105965008 41 ACGGGGGCCAGAGTGGAGTGCCGCGCGGCGGGCCTCTCGGG ACGGGGGCCAGAGTGGAGTGCTGCGCGGCGGGCCTCTCGGG < 41bp 0.493850870930003 0.714466392192592 0.32707608 0.36404192 prediction 0.428932784385183 Functional Gain - C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105964988 chr14:105964989 synonymous SNV . 0 22 hm5C_associated_SNPs_122370 0 0 1 0 1 C14orf80 chr14:105964954 3'AG 105964954 Downstream 36bp
chr3 136646888 136646888 1 + C G BLCA 136646887 + 136646867 136646907 41 AGCCAAATTTGATTATGTGGCCCAACAAGAACAAGAGTTGG AGCCAAATTTGATTATGTGGCGCAACAAGAACAAGAGTTGG < 41bp 0.409930355279193 0.714459024584241 0.039410263 0.08722144 prediction 0.428918049168481 Functional Gain - NCK1 ENSG00000158092 CDS Human protein_coding chr3:136646887 chr3:136646888 synonymous SNV . 0 22 hm5C_associated_SNPs_122372 0 0 1 0 1 NCK1 chr3:136646826 3'AG 136646826 Downstream 63bp
chr1 26524852 26524852 1 + T C COAD 26524849 + 26524829 26524869 41 TCCAGAACATACAGGTTGCGCTGTACACCCTCTTCATCTGC TCCAGAACATACAGGTTGCGCTGCACACCCTCTTCATCTGC < 41bp 0.529161236530568 0.743611878085333 0.02337414 0.018436879 prediction 0.428901283109529 Functional Gain - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26524849 chr1:26524852 nonsynonymous SNV 0.826 5 24 hm5C_associated_SNPs_122375 0 0 0 1 3 CATSPER4 chr1:26524777 3'AG 26524777 Downstream 76bp
chr1 26524852 26524852 1 + T C COAD 26524849 + 26524829 26524869 41 TCCAGAACATACAGGTTGCGCTGTACACCCTCTTCATCTGC TCCAGAACATACAGGTTGCGCTGCACACCCTCTTCATCTGC < 41bp 0.529161236530568 0.743611878085333 0.02337414 0.018436879 prediction 0.428901283109529 Functional Gain - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26524849 chr1:26524852 nonsynonymous SNV 0.826 5 24 hm5C_associated_SNPs_122375 0 0 0 1 3 CATSPER4 chr1:26524825 3'AG 26524825 Downstream 28bp
chr1 26524852 26524852 1 + T C COAD 26524849 + 26524829 26524869 41 TCCAGAACATACAGGTTGCGCTGTACACCCTCTTCATCTGC TCCAGAACATACAGGTTGCGCTGCACACCCTCTTCATCTGC < 41bp 0.529161236530568 0.743611878085333 0.02337414 0.018436879 prediction 0.428901283109529 Functional Gain - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26524849 chr1:26524852 nonsynonymous SNV 0.826 5 24 hm5C_associated_SNPs_122375 0 0 0 1 3 CATSPER4 chr1:26524910 5'GT 26524910 Upstream 59bp
chr8 2033485 2033485 1 + C T LUSC 2033484 + 2033464 2033504 41 TCAGCTGGGAGCCACCCACTCCCCGTGGCAAGGACCCGCTC TCAGCTGGGAGCCACCCACTCTCCGTGGCAAGGACCCGCTC < 41bp 0.444017520350912 0.714449682180772 0.113726586 0.3543654 prediction 0.428899364361544 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2033484 chr8:2033485 nonsynonymous SNV 0.022 3 22 hm5C_associated_SNPs_122376 0 0 0 0 2 MYOM2 chr8:2033395 3'AG 2033395 Downstream 91bp
chr8 2033485 2033485 1 + C T LUSC 2033484 + 2033464 2033504 41 TCAGCTGGGAGCCACCCACTCCCCGTGGCAAGGACCCGCTC TCAGCTGGGAGCCACCCACTCTCCGTGGCAAGGACCCGCTC < 41bp 0.444017520350912 0.714449682180772 0.113726586 0.3543654 prediction 0.428899364361544 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2033484 chr8:2033485 nonsynonymous SNV 0.022 3 22 hm5C_associated_SNPs_122376 0 0 0 0 2 MYOM2 chr8:2033522 5'GT 2033522 Upstream 38bp
chr19 36357122 36357122 1 + C T SKCM 36357121 + 36357101 36357141 41 AGCCTGAGCCTTGGCGAAGCCCCTGGAGGAGGTCTCTTCCT AGCCTGAGCCTTGGCGAAGCCTCTGGAGGAGGTCTCTTCCT < 41bp 0.462278192541534 0.71444155156943 0.30784208 0.2369467 prediction 0.428883103138861 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36357121 chr19:36357122 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_122381 0 0 0 0 2 KIRREL2 chr19:36357059 3'AG 36357059 Downstream 64bp
chr19 36357122 36357122 1 + C T SKCM 36357121 + 36357101 36357141 41 AGCCTGAGCCTTGGCGAAGCCCCTGGAGGAGGTCTCTTCCT AGCCTGAGCCTTGGCGAAGCCTCTGGAGGAGGTCTCTTCCT < 41bp 0.462278192541534 0.71444155156943 0.30784208 0.2369467 prediction 0.428883103138861 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36357121 chr19:36357122 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_122381 0 0 0 0 2 KIRREL2 chr19:36357097 3'AG 36357097 Downstream 26bp
chr17 60469289 60469289 1 + T C rs61764063 60469287 + 60469267 60469307 41 TGGGAATGAATCTGACCAAGCATGATGTCTATAATGAATTG TGGGAATGAATCTGACCAAGCACGATGTCTATAATGAATTG < 41bp 0.643350201758513 0.857791421660621 0.16114703 0.23067951 prediction 0.428882439804215 Functional Gain - EFCAB3 ENSG00000172421 CDS Human protein_coding chr17:60469287 chr17:60469289 synonymous SNV . 0 23 hm5C_associated_SNPs_122383 0 0 0 0 1 EFCAB3 chr17:60469326 5'GT 60469326 Upstream 38bp
chr6 117890830 117890830 1 + C T HNSC 117890829 + 117890809 117890849 41 CATCCCCAACGTGCAGCCCTCCGCATCTATCAGCAGGTTGC CATCCCCAACGTGCAGCCCTCTGCATCTATCAGCAGGTTGC < 41bp 0.461826135529885 0.714436857745158 0.03861764 0.12319544 prediction 0.428873715490316 Functional Gain - GOPC ENSG00000047932 CDS Human other chr6:117890829 chr6:117890830 nonsynonymous SNV 0.504 2 22 hm5C_associated_SNPs_122386 0 0 0 1 1 DCBLD1;GOPC chr6:117890783 3'AG 117890783 Downstream 48bp
chr16 27363900 27363900 1 + C T HNSC 27363899 + 27363879 27363919 41 ACCTACCTAGAACCCTCCCTCCGCATCGCAGCCAGCACCCT ACCTACCTAGAACCCTCCCTCTGCATCGCAGCCAGCACCCT < 41bp 0.442739882430915 0.714435961192735 0.054354727 0.1306349 prediction 0.428871922385469 Functional Gain - IL4R ENSG00000077238 CDS Human protein_coding chr16:27363899 chr16:27363900 nonsynonymous SNV 0.002 2 22 hm5C_associated_SNPs_122387 0 0 1 0 2 IL4R chr16:27363861 3'AG 27363861 Downstream 40bp
chr16 27363900 27363900 1 + C T HNSC 27363899 + 27363879 27363919 41 ACCTACCTAGAACCCTCCCTCCGCATCGCAGCCAGCACCCT ACCTACCTAGAACCCTCCCTCTGCATCGCAGCCAGCACCCT < 41bp 0.442739882430915 0.714435961192735 0.054354727 0.1306349 prediction 0.428871922385469 Functional Gain - IL4R ENSG00000077238 CDS Human protein_coding chr16:27363899 chr16:27363900 nonsynonymous SNV 0.002 2 22 hm5C_associated_SNPs_122387 0 0 1 0 2 IL4R chr16:27363866 3'AG 27363866 Downstream 35bp
chr1 161681069 161681069 1 + T G UCEC 161681067 + 161681047 161681087 41 GCTGGTTCTGCGCTGCCAGGCCTGGCAAGACTGGCCACTGA GCTGGTTCTGCGCTGCCAGGCCGGGCAAGACTGGCCACTGA < 41bp 0.394593604840031 0.714428315734469 0.21419835 0.6824566 prediction 0.428856631468939 Functional Gain - FCRLA ENSG00000132185 CDS Human protein_coding chr1:161681067 chr1:161681069 nonsynonymous SNV 0.985 3 23 hm5C_associated_SNPs_122391 0 0 1 0 1 FCRLA chr1:161680998 3'AG 161680998 Downstream 72bp
chr12 56629078 56629078 1 + T C BLCA 56629075 + 56629055 56629095 41 GGGCCCTGGCGGTGGGCACTCTTTGTGGGGATGCACTGCTA GGGCCCTGGCGGTGGGCACTCTTCGTGGGGATGCACTGCTA < 41bp 0.50381862899496 0.718246599793734 0.25529557 0.37654242 prediction 0.428855941597549 Functional Gain - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56629075 chr12:56629078 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_122392 0 0 0 0 1 SLC39A5 chr12:56629110 5'GT 56629110 Upstream 33bp
chr11 125788603 125788603 1 + C T UCEC 125788602 + 125788582 125788622 41 TTTGTTAAGCGGGGAGCTGACCGTGGAGCAGCGAGCTTCCA TTTGTTAAGCGGGGAGCTGACTGTGGAGCAGCGAGCTTCCA < 41bp 0.601546089702967 0.815972542097007 0.467681 0.38954747 prediction 0.428852904788078 Functional Gain - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125788602 chr11:125788603 synonymous SNV . 0 22 hm5C_associated_SNPs_122393 0 0 0 0 2 DDX25 chr11:125788523 3'AG 125788523 Downstream 81bp
chr11 125788603 125788603 1 + C T UCEC 125788602 + 125788582 125788622 41 TTTGTTAAGCGGGGAGCTGACCGTGGAGCAGCGAGCTTCCA TTTGTTAAGCGGGGAGCTGACTGTGGAGCAGCGAGCTTCCA < 41bp 0.601546089702967 0.815972542097007 0.467681 0.38954747 prediction 0.428852904788078 Functional Gain - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125788602 chr11:125788603 synonymous SNV . 0 22 hm5C_associated_SNPs_122393 0 0 0 0 2 DDX25 chr11:125788685 5'GT 125788685 Upstream 83bp
chr1 16096952 16096952 1 + T C UCEC 16096949 + 16096929 16096969 41 CGTGTCCCCCCGAGAGCTGGCTGTGGAGGCCATGAAGAGGC CGTGTCCCCCCGAGAGCTGGCTGCGGAGGCCATGAAGAGGC < 41bp 0.532949110235168 0.747373844658646 0.32585084 0.6641798 prediction 0.428849468846956 Functional Gain - FBLIM1 ENSG00000162458 CDS Human protein_coding chr1:16096949 chr1:16096952 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_122394 0 0 0 0 1 FBLIM1 chr1:16096904 3'AG 16096904 Downstream 49bp
chr19 18703013 18703013 1 + C A rs199575264 18703012 + 18702992 18703032 41 GGCGGCTCCCCAGGGATGCGCCGAGGGAGATGGGAAACGGG GGCGGCTCCCCAGGGATGCGCAGAGGGAGATGGGAAACGGG < 41bp 0.56720540041104 0.781626320174002 0.81014794 0.8878969 prediction 0.428841839525924 Functional Gain - C19orf60 ENSG00000006015 UTR3 Human protein_coding chr19:18703012 chr19:18703013 . . 0 22 hm5C_associated_SNPs_122397 0 0 1 0 1 C19orf60 chr19:18702918 3'AG 18702918 Downstream 96bp
chr6 90333701 90333701 1 + C T STAD 90333700 + 90333680 90333720 41 GAACAGGCATCGGTGTTCATCCCCACCCCCACCCCATGAGT GAACAGGCATCGGTGTTCATCTCCACCCCCACCCCATGAGT < 41bp 0.422368660733427 0.714418047374328 0.09693363 0.88720644 prediction 0.428836094748656 Functional Gain - ANKRD6 ENSG00000135299 CDS Human protein_coding chr6:90333700 chr6:90333701 synonymous SNV . 0 22 hm5C_associated_SNPs_122399 0 0 0 0 1 ANKRD6 chr6:90333776 5'GT 90333776 Upstream 76bp
chr19 50017183 50017183 1 + C G THCA 50017179 + 50017159 50017199 41 TACCACCTTACCGCGGTGTCCTCGCCTGCCCCGGGGACTCC TACCACCTTACCGCGGTGTCCTCGGCTGCCCCGGGGACTCC < 41bp 0.58364358679432 0.798060330772963 0.27153754 0.7698655 prediction 0.428833487957286 Functional Gain - FCGRT ENSG00000104870 CDS Human protein_coding chr19:50017179 chr19:50017183 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_122400 0 0 1 0 1 FCGRT chr19:50017139 3'AG 50017139 Downstream 45bp
chr20 43545420 43545420 1 + C T STAD 43545419 + 43545399 43545439 41 GGCGTGTGACGAGCATGGCTCCCGGGGTTTCGGCTTTGTCC GGCGTGTGACGAGCATGGCTCTCGGGGTTTCGGCTTTGTCC < 41bp 0.482268149798055 0.71441313910858 0.89965844 0.28397942 prediction 0.428826278217159 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545419 chr20:43545420 synonymous SNV . 0 22 hm5C_associated_SNPs_122401 0 0 1 0 1 PABPC1L chr20:43545397 3'AG 43545397 Downstream 24bp
chr1 203014682 203014682 1 + C T OV 203014681 + 203014661 203014701 41 AGCAAGCATCAGCGGGACCTCCGGGAGGTGCGTGAGGGCGC AGCAAGCATCAGCGGGACCTCTGGGAGGTGCGTGAGGGCGC < 41bp 0.572754475950176 0.787164110395059 0.517225 0.4161027 prediction 0.428819268889767 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203014681 chr1:203014682 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_122402 0 0 1 0 1 PPFIA4 chr1:203014687 5'GT 203014687 Upstream 6bp
chr17 36288233 36288233 1 + C T COAD 36288232 + 36288212 36288252 41 AAGGGAATGCCCATGAACATCCGGGGCCCGATGTGGTCAGT AAGGGAATGCCCATGAACATCTGGGGCCCGATGTGGTCAGT < 41bp 0.583069569915636 0.797477505389682 0.86205703 0.6576364 prediction 0.42881587094809 Functional Gain - TBC1D3;TBC1D3C;TBC1D3D;TBC1D3E;TBC1D3F;TBC1D3G;TBC1D3H;TBC1D3I;TBC1D3K;TBC1D3L ENSG00000185128 CDS Human other chr17:36288232 chr17:36288233 nonsynonymous SNV 0.020 1 22 hm5C_associated_SNPs_122403 0 0 1 0 2 TBC1D3;TBC1D3C;TBC1D3D;TBC1D3E;TBC1D3F;TBC1D3G;TBC1D3H;TBC1D3I;TBC1D3K;TBC1D3L chr17:36288194 3'AG 36288194 Downstream 40bp
chr17 36288233 36288233 1 + C T COAD 36288232 + 36288212 36288252 41 AAGGGAATGCCCATGAACATCCGGGGCCCGATGTGGTCAGT AAGGGAATGCCCATGAACATCTGGGGCCCGATGTGGTCAGT < 41bp 0.583069569915636 0.797477505389682 0.86205703 0.6576364 prediction 0.42881587094809 Functional Gain - TBC1D3;TBC1D3C;TBC1D3D;TBC1D3E;TBC1D3F;TBC1D3G;TBC1D3H;TBC1D3I;TBC1D3K;TBC1D3L ENSG00000185128 CDS Human other chr17:36288232 chr17:36288233 nonsynonymous SNV 0.020 1 22 hm5C_associated_SNPs_122403 0 0 1 0 2 TBC1D3;TBC1D3C;TBC1D3D;TBC1D3E;TBC1D3F;TBC1D3G;TBC1D3H;TBC1D3I;TBC1D3K;TBC1D3L chr17:36288301 5'GT 36288301 Upstream 69bp
chr16 29856130 29856130 1 + C T LUAD 29856129 + 29856109 29856149 41 GAGCCTGTGGATCAGAGGACCCGGGACGCCCTGCAACGCAG GAGCCTGTGGATCAGAGGACCTGGGACGCCCTGCAACGCAG < 41bp 0.585976256289346 0.800380984946248 0.88811225 0.90874374 prediction 0.428809457313804 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29856129 chr16:29856130 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_122405 0 0 1 0 1 MVP chr16:29856200 5'GT 29856200 Upstream 71bp
chr19 51631217 51631217 1 + T C rs147843388 51631215 + 51631195 51631235 41 TCTGTCAACAGGCAAAGCCACATCAGGAGTGACTCAGGGGG TCTGTCAACAGGCAAAGCCACACCAGGAGTGACTCAGGGGG < 41bp 0.430724082264492 0.714402896766244 0.23857191 0.22703823 prediction 0.428805793532488 Functional Gain - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51631215 chr19:51631217 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_122406 0 0 0 0 2 SIGLEC9 chr19:51631206 3'AG 51631206 Downstream 12bp
chr19 51631217 51631217 1 + T C rs147843388 51631215 + 51631195 51631235 41 TCTGTCAACAGGCAAAGCCACATCAGGAGTGACTCAGGGGG TCTGTCAACAGGCAAAGCCACACCAGGAGTGACTCAGGGGG < 41bp 0.430724082264492 0.714402896766244 0.23857191 0.22703823 prediction 0.428805793532488 Functional Gain - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51631215 chr19:51631217 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_122406 0 0 0 0 2 SIGLEC9 chr19:51631296 5'GT 51631296 Upstream 80bp
chr16 72142375 72142375 1 + C T UCEC 72142374 + 72142354 72142394 41 CTCCGTCTCCTGCCCTAGGTCCGGGAGGTGCGAGCTCAACT CTCCGTCTCCTGCCCTAGGTCTGGGAGGTGCGAGCTCAACT < 41bp 0.601257812143393 0.815658085671171 0.845819 0.46893102 prediction 0.428800547055557 Functional Gain - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72142374 chr16:72142375 nonsynonymous SNV 0.901 4 22 hm5C_associated_SNPs_122409 0 0 1 0 1 DHX38 chr16:72142372 3'AG 72142372 Downstream 4bp
chr20 32848271 32848271 1 + C T UCEC 32848270 + 32848250 32848290 41 CTGCCACCTGAGGAGAAGCTCCGAGATGACAGGAGCCTGAG CTGCCACCTGAGGAGAAGCTCTGAGATGACAGGAGCCTGAG < 41bp 0.484017804302299 0.71439637614907 0.29242706 0.24376968 prediction 0.42879275229814 Functional Gain - ASIP ENSG00000101440 CDS Human protein_coding chr20:32848270 chr20:32848271 stopgain 0.103 0 22 hm5C_associated_SNPs_122410 0 0 0 0 1 ASIP chr20:32848340 5'GT 32848340 Upstream 70bp
chr22 26692917 26692917 1 + C T SKCM 26692916 + 26692896 26692936 41 CGCGGGGTGGACGGCCCTACCCTGACCGTCCTGGCCAACCA CGCGGGGTGGACGGCCCTACCTTGACCGTCCTGGCCAACCA < 41bp 0.618285421740526 0.832681243819681 0.05515349 0.17976394 prediction 0.428791644158309 Functional Gain - SEZ6L ENSG00000100095 CDS Human protein_coding chr22:26692916 chr22:26692917 synonymous SNV . 0 22 hm5C_associated_SNPs_122411 0 0 0 0 1 SEZ6L chr22:26692854 3'AG 26692854 Downstream 64bp
chr17 4700088 4700088 1 + T A rs11552523 4700084 + 4700064 4700104 41 GGGGGCGGACTCCAGAACAACCACTGGGTGAGCTCAGGACA GGGGGCGGACTCCAGAACAACCACAGGGTGAGCTCAGGACA < 41bp 0.370234897596898 0.714389070405928 0.2921091 0.33612305 prediction 0.428778140811855 Functional Gain - PSMB6 ENSG00000142507 CDS Human protein_coding chr17:4700084 chr17:4700088 synonymous SNV . 0 25 hm5C_associated_SNPs_122412 0 0 1 0 2 PSMB6 chr17:4700023 3'AG 4700023 Downstream 66bp
chr17 4700088 4700088 1 + T A rs11552523 4700084 + 4700064 4700104 41 GGGGGCGGACTCCAGAACAACCACTGGGTGAGCTCAGGACA GGGGGCGGACTCCAGAACAACCACAGGGTGAGCTCAGGACA < 41bp 0.370234897596898 0.714389070405928 0.2921091 0.33612305 prediction 0.428778140811855 Functional Gain - PSMB6 ENSG00000142507 CDS Human protein_coding chr17:4700084 chr17:4700088 synonymous SNV . 0 25 hm5C_associated_SNPs_122412 0 0 1 0 2 PSMB6 chr17:4700090 5'GT 4700090 Upstream 3bp
chr1 29185716 29185716 1 + C T UCEC 29185715 + 29185695 29185735 41 CCTGTCAAGGCCCTGGACTTCCGCACGCCTGCCAAGGCCAA CCTGTCAAGGCCCTGGACTTCTGCACGCCTGCCAAGGCCAA < 41bp 0.613985503262699 0.828372598252557 0.6022336 0.38121882 prediction 0.428774189979717 Functional Gain - OPRD1 ENSG00000116329 CDS Human protein_coding chr1:29185715 chr1:29185716 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_122414 0 0 0 0 1 OPRD1 chr1:29185815 5'GT 29185815 Upstream 100bp
chr6 41010825 41010825 1 + C T LUSC 41010824 + 41010804 41010844 41 TGTCTGGTTGGTGTGAGGGCCCGAGGATGCTGTCCTGGTGC TGTCTGGTTGGTGTGAGGGCCTGAGGATGCTGTCCTGGTGC < 41bp 0.539536239653047 0.753922632941868 0.70504946 0.7507014 prediction 0.428772786577641 Functional Gain - TSPO2 ENSG00000112212 CDS Human protein_coding chr6:41010824 chr6:41010825 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_122415 0 0 0 0 1 TSPO2 chr6:41010897 5'GT 41010897 Upstream 73bp
chr12 3040254 3040254 1 + C T SKCM 3040253 + 3040233 3040273 41 GCCCAACCAGCTGATAACCTCCTGGGAGACATAGACGACCT GCCCAACCAGCTGATAACCTCTTGGGAGACATAGACGACCT < 41bp 0.453615428734484 0.714376815298452 0.1690453 0.10492879 prediction 0.428753630596904 Functional Gain - TULP3 ENSG00000078246 CDS Human protein_coding chr12:3040253 chr12:3040254 synonymous SNV . 0 22 hm5C_associated_SNPs_122418 0 0 0 0 1 TULP3 chr12:3040203 3'AG 3040203 Downstream 52bp
chr11 75501774 75501774 1 + C T SKCM 75501773 + 75501753 75501793 41 TTTCGAGACTACTTTCCCATCCAGGTAAAGTGCTGTGAGTG TTTCGAGACTACTTTCCCATCTAGGTAAAGTGCTGTGAGTG < 41bp 0.459491270033655 0.714372786652443 0.8965169 0.40654173 prediction 0.428745573304886 Functional Gain - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75501773 chr11:75501774 stopgain 0.998 1 22 hm5C_associated_SNPs_122420 0 0 1 0 2 DGAT2 chr11:75501706 3'AG 75501706 Downstream 69bp
chr11 75501774 75501774 1 + C T SKCM 75501773 + 75501753 75501793 41 TTTCGAGACTACTTTCCCATCCAGGTAAAGTGCTGTGAGTG TTTCGAGACTACTTTCCCATCTAGGTAAAGTGCTGTGAGTG < 41bp 0.459491270033655 0.714372786652443 0.8965169 0.40654173 prediction 0.428745573304886 Functional Gain - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75501773 chr11:75501774 stopgain 0.998 1 22 hm5C_associated_SNPs_122420 0 0 1 0 2 DGAT2 chr11:75501776 5'GT 75501776 Upstream 3bp
chr21 42710379 42710379 1 + A G HNSC 42710376 + 42710356 42710396 41 ACACCTATGCCTACAGGTTACTCAGCGGAGGTGGCAGAAGC ACACCTATGCCTACAGGTTACTCGGCGGAGGTGGCAGAAGC < 41bp 0.569596078074899 0.783962271641775 0.15752062 0.52220947 prediction 0.428732387133753 Functional Gain - FAM3B ENSG00000183844 CDS Human protein_coding chr21:42710376 chr21:42710379 nonsynonymous SNV 0.654 4 24 hm5C_associated_SNPs_122423 0 0 1 0 2 FAM3B chr21:42710305 3'AG 42710305 Downstream 75bp
chr21 42710379 42710379 1 + A G HNSC 42710376 + 42710356 42710396 41 ACACCTATGCCTACAGGTTACTCAGCGGAGGTGGCAGAAGC ACACCTATGCCTACAGGTTACTCGGCGGAGGTGGCAGAAGC < 41bp 0.569596078074899 0.783962271641775 0.15752062 0.52220947 prediction 0.428732387133753 Functional Gain - FAM3B ENSG00000183844 CDS Human protein_coding chr21:42710376 chr21:42710379 nonsynonymous SNV 0.654 4 24 hm5C_associated_SNPs_122423 0 0 1 0 2 FAM3B chr21:42710428 5'GT 42710428 Upstream 50bp
chr6 160218358 160218358 1 + T C LUSC 160218356 + 160218336 160218376 41 CTCAGCATCATGTAGAAGCACTTGTGGAGCATCAGAATGGC CTCAGCATCATGTAGAAGCACTCGTGGAGCATCAGAATGGC < 41bp 0.433165753590632 0.71436580039856 0.06352419 0.049390227 prediction 0.428731600797121 Functional Gain - MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160218356 chr6:160218358 synonymous SNV . 0 23 hm5C_associated_SNPs_122425 0 0 1 12 1 MRPL18 chr6:160218319 3'AG 160218319 Downstream 40bp
chr4 187077241 187077241 1 + T C LIHC 187077238 + 187077218 187077258 41 CCTCCTGTTTCCCCGCGTGACTGTGTCAAAGATGCCGTGGC CCTCCTGTTTCCCCGCGTGACTGCGTCAAAGATGCCGTGGC < 41bp 0.490036628357819 0.714364130025448 0.06595418 0.18988729 prediction 0.428728260050897 Functional Gain - FAM149A ENSG00000109794 CDS Human protein_coding chr4:187077238 chr4:187077241 synonymous SNV . 0 24 hm5C_associated_SNPs_122428 0 0 0 0 1 FAM149A chr4:187077154 3'AG 187077154 Downstream 88bp
chr19 35330548 35330548 1 + C G rs114416150 35330547 + 35330527 35330567 41 TGTGATCACCTCTCCAAGTCCCGGTGTCAGGAGCCTTCTCT TGTGATCACCTCTCCAAGTCCGGGTGTCAGGAGCCTTCTCT < 41bp 0.412228192723606 0.71435688947009 0.058327466 0.55107117 prediction 0.428713778940179 Functional Gain - LINC01801;LINC00904 ENSG00000269086 ncRNA_exonic Human lincRNA chr19:35330547 chr19:35330548 . . 0 22 hm5C_associated_SNPs_122430 0 0 0 0 1 LINC01801;LINC00904 chr19:35330503 3'AG 35330503 Downstream 46bp
chr9 127965332 127965332 1 + A G STAD 127965329 + 127965309 127965349 41 TCTTGGAACCTGGAGACAAGCCCAGGAAAGCAACATGGTCT TCTTGGAACCTGGAGACAAGCCCGGGAAAGCAACATGGTCT < 41bp 0.566759893891177 0.781109288199614 0.056125104 0.06812209 prediction 0.428698788616874 Functional Gain - RABEPK ENSG00000136933 CDS Human protein_coding chr9:127965329 chr9:127965332 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_122431 0 0 1 0 2 RABEPK chr9:127965287 3'AG 127965287 Downstream 46bp
chr9 127965332 127965332 1 + A G STAD 127965329 + 127965309 127965349 41 TCTTGGAACCTGGAGACAAGCCCAGGAAAGCAACATGGTCT TCTTGGAACCTGGAGACAAGCCCGGGAAAGCAACATGGTCT < 41bp 0.566759893891177 0.781109288199614 0.056125104 0.06812209 prediction 0.428698788616874 Functional Gain - RABEPK ENSG00000136933 CDS Human protein_coding chr9:127965329 chr9:127965332 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_122431 0 0 1 0 2 RABEPK chr9:127965345 5'GT 127965345 Upstream 14bp
chr14 52182163 52182163 1 + T C ACC 52182160 + 52182140 52182180 41 TTCTGAGCAACAGCCACCGCCTCTATATGAATCTGCAGCCT TTCTGAGCAACAGCCACCGCCTCCATATGAATCTGCAGCCT < 41bp 0.533823733498367 0.748171293452324 0.91639256 0.96558785 prediction 0.428695119907915 Functional Gain - FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52182160 chr14:52182163 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_122435 0 0 0 0 1 FRMD6 chr14:52182217 5'GT 52182217 Upstream 55bp
chr12 7066906 7066906 1 + C T STAD 7066905 + 7066885 7066925 41 CTGCGGGGAGCATGACACAACCGAATACAAACTCCGTACCT CTGCGGGGAGCATGACACAACTGAATACAAACTCCGTACCT < 41bp 0.600229289789556 0.814556368118094 0.2686783 0.20361206 prediction 0.428654156657077 Functional Gain - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7066905 chr12:7066906 synonymous SNV . 0 22 hm5C_associated_SNPs_122444 0 0 0 0 2 PTPN6 chr12:7066817 3'AG 7066817 Downstream 90bp
chr12 7066906 7066906 1 + C T STAD 7066905 + 7066885 7066925 41 CTGCGGGGAGCATGACACAACCGAATACAAACTCCGTACCT CTGCGGGGAGCATGACACAACTGAATACAAACTCCGTACCT < 41bp 0.600229289789556 0.814556368118094 0.2686783 0.20361206 prediction 0.428654156657077 Functional Gain - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7066905 chr12:7066906 synonymous SNV . 0 22 hm5C_associated_SNPs_122444 0 0 0 0 2 PTPN6 chr12:7066948 5'GT 7066948 Upstream 43bp
chr1 171759661 171759661 1 + C T COAD 171759660 + 171759640 171759680 41 CGGAGGACCTCCCTGCAGCCCCGGGGCAGTCCATTGATAAG CGGAGGACCTCCCTGCAGCCCTGGGGCAGTCCATTGATAAG < 41bp 0.586577259901868 0.800901088959037 0.5274892 0.26225007 prediction 0.428647658114337 Functional Gain - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171759660 chr1:171759661 nonsynonymous SNV 0.533 1 22 hm5C_associated_SNPs_122446 0 0 0 0 2 METTL13 chr1:171759592 3'AG 171759592 Downstream 70bp
chr1 171759661 171759661 1 + C T COAD 171759660 + 171759640 171759680 41 CGGAGGACCTCCCTGCAGCCCCGGGGCAGTCCATTGATAAG CGGAGGACCTCCCTGCAGCCCTGGGGCAGTCCATTGATAAG < 41bp 0.586577259901868 0.800901088959037 0.5274892 0.26225007 prediction 0.428647658114337 Functional Gain - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171759660 chr1:171759661 nonsynonymous SNV 0.533 1 22 hm5C_associated_SNPs_122446 0 0 0 0 2 METTL13 chr1:171759756 5'GT 171759756 Upstream 96bp
chr4 103537644 103537644 1 + C T SKCM 103537643 + 103537623 103537663 41 AGCGGCGTGGAGACATCCTTCCGCAAACTCAGCTTTACCGA AGCGGCGTGGAGACATCCTTCTGCAAACTCAGCTTTACCGA < 41bp 0.613405411561773 0.827727779255913 0.15424114 0.20647281 prediction 0.428644735388281 Functional Gain - NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103537643 chr4:103537644 nonsynonymous SNV 0.985 2 22 hm5C_associated_SNPs_122447 0 0 0 0 1 NFKB1 chr4:103537591 3'AG 103537591 Downstream 54bp
chr1 57378266 57378266 1 + T G HNSC 57378264 + 57378244 57378284 41 TGCCAGTGCCGCCTGGGTAGCTTGGGTGCTGCCTGTGAGCA TGCCAGTGCCGCCTGGGTAGCTGGGGTGCTGCCTGTGAGCA < 41bp 0.702762329487287 0.917081285912127 0.09426454 0.6803046 prediction 0.428637912849681 Functional Gain - C8A ENSG00000157131 CDS Human protein_coding chr1:57378264 chr1:57378266 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_122448 0 0 0 0 1 C8A chr1:57378298 5'GT 57378298 Upstream 33bp
chr2 105123860 105123860 1 + T C rs544566161 105123858 + 105123838 105123878 41 CCCACCCAGTCCATGGACAGCATGGAGGTAATGAACTTTAA CCCACCCAGTCCATGGACAGCACGGAGGTAATGAACTTTAA < 41bp 0.527853001184334 0.742168652941857 0.32122424 0.31474078 prediction 0.428631303515046 Functional Gain - LINC01102 ENSG00000235597 ncRNA_exonic Human lincRNA chr2:105123858 chr2:105123860 . . 0 23 hm5C_associated_SNPs_122450 0 0 0 0 1 LINC01102 chr2:105123864 5'GT 105123864 Upstream 5bp
chr11 47283128 47283128 1 + C T COAD 47283127 + 47283107 47283147 41 ATGGCACCAGATCCCCATAGCCGGGAGGCCCGTCAGCAGCG ATGGCACCAGATCCCCATAGCTGGGAGGCCCGTCAGCAGCG < 41bp 0.589983967494876 0.804294874739292 0.8928102 0.63180304 prediction 0.428621814488831 Functional Gain - NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47283127 chr11:47283128 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_122453 0 0 1 0 1 NR1H3 chr11:47283098 3'AG 47283098 Downstream 31bp
chr2 58315576 58315576 1 + C A LUAD 58315575 + 58315555 58315595 41 ACTGTCCTGCAATTAGGTATCCGAATGGTAAGAATTACTTA ACTGTCCTGCAATTAGGTATCAGAATGGTAAGAATTACTTA < 41bp 0.470014257587287 0.714306206648144 0.42416167 0.85499823 prediction 0.428612413296289 Functional Gain - VRK2 ENSG00000028116 CDS Human protein_coding chr2:58315575 chr2:58315576 synonymous SNV . 0 22 hm5C_associated_SNPs_122457 0 0 1 0 1 VRK2 chr2:58315581 5'GT 58315581 Upstream 6bp
chr12 8902671 8902671 1 + C T COAD 8902670 + 8902650 8902690 41 CTGGCCATGGTGTTCCTCTGCCGGATACTTTCTCTTATGGT CTGGCCATGGTGTTCCTCTGCTGGATACTTTCTCTTATGGT < 41bp 0.460639877954519 0.714298554945676 0.56280714 0.39577672 prediction 0.428597109891352 Functional Gain - RIMKLB ENSG00000166532 CDS Human protein_coding chr12:8902670 chr12:8902671 nonsynonymous SNV 0.987 3 22 hm5C_associated_SNPs_122461 0 0 1 0 1 RIMKLB chr12:8902688 5'GT 8902688 Upstream 18bp
chr7 50367351 50367351 1 + T G LUSC 50367349 + 50367329 50367369 41 AGCTCCAAGAGTGACAGAGTCGTGGGTAAGTGGGTCACCAG AGCTCCAAGAGTGACAGAGTCGGGGGTAAGTGGGTCACCAG < 41bp 0.635700840474469 0.849993511240443 0.8864993 0.951277 prediction 0.428585341531947 Functional Gain - IKZF1 ENSG00000185811 CDS Human protein_coding chr7:50367349 chr7:50367351 nonsynonymous SNV 0.654 0 23 hm5C_associated_SNPs_122463 0 0 0 0 1 IKZF1 chr7:50367353 5'GT 50367353 Upstream 3bp
chr17 57047057 57047057 1 + A G UCEC 57047054 + 57047034 57047074 41 GTGCAGGGCCTTCCGGGTCACTGATGAGCGGTTTGTGCAGA GTGCAGGGCCTTCCGGGTCACTGGTGAGCGGTTTGTGCAGA < 41bp 0.579681014440369 0.793973439719818 0.2041322 0.4502583 prediction 0.428584850558899 Functional Gain - PPM1E ENSG00000175175 CDS Human protein_coding chr17:57047054 chr17:57047057 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_122465 0 0 0 0 1 PPM1E chr17:57047088 5'GT 57047088 Upstream 32bp
chr9 34657047 34657047 1 + C A COAD 34657043 + 34657023 34657063 41 TGCCTCTAGACCCTCCAGCCCGCCCTGTTGTCTCCTGCCAA TGCCTCTAGACCCTCCAGCCCGCCATGTTGTCTCCTGCCAA < 41bp 0.276510789400602 0.714292424106413 0.110126466 0.76586294 prediction 0.428584848212825 Functional Gain - IL11RA ENSG00000137070;ENSG00000258728 CDS Human other chr9:34657043 chr9:34657047 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_122466 0 0 0 0 2 IL11RA chr9:34657032 3'AG 34657032 Downstream 16bp
chr9 34657047 34657047 1 + C A COAD 34657043 + 34657023 34657063 41 TGCCTCTAGACCCTCCAGCCCGCCCTGTTGTCTCCTGCCAA TGCCTCTAGACCCTCCAGCCCGCCATGTTGTCTCCTGCCAA < 41bp 0.276510789400602 0.714292424106413 0.110126466 0.76586294 prediction 0.428584848212825 Functional Gain - IL11RA ENSG00000137070;ENSG00000258728 CDS Human protein_coding chr9:34657043 chr9:34657047 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_122466 0 0 0 0 2 IL11RA chr9:34657146 5'GT 34657146 Upstream 100bp
chr3 13670481 13670481 1 + A G rs2242023 13670478 + 13670458 13670498 41 ATCAACACGGTGGGCTCCTACACATGCCAGAGGAACCCGCT ATCAACACGGTGGGCTCCTACACGTGCCAGAGGAACCCGCT < 41bp 0.467215577588601 0.714292105473484 0.10543719 0.30225635 prediction 0.428584210946968 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13670478 chr3:13670481 synonymous SNV . 0 24 hm5C_associated_SNPs_122467 0 0 0 0 2 FBLN2 chr3:13670405 3'AG 13670405 Downstream 77bp
chr3 13670481 13670481 1 + A G rs2242023 13670478 + 13670458 13670498 41 ATCAACACGGTGGGCTCCTACACATGCCAGAGGAACCCGCT ATCAACACGGTGGGCTCCTACACGTGCCAGAGGAACCCGCT < 41bp 0.467215577588601 0.714292105473484 0.10543719 0.30225635 prediction 0.428584210946968 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13670478 chr3:13670481 synonymous SNV . 0 24 hm5C_associated_SNPs_122467 0 0 0 0 2 FBLN2 chr3:13670548 5'GT 13670548 Upstream 68bp
chr13 113765027 113765027 1 + C T rs376971927 113765026 + 113765006 113765046 41 TTCGTAACCCAGGAGGAAGCCCACGGCGTCCTGCACCGGCG TTCGTAACCCAGGAGGAAGCCTACGGCGTCCTGCACCGGCG < 41bp 0.575543375265341 0.789830752690687 0.36676157 0.76952803 prediction 0.42857475485069 Functional Gain - F7 ENSG00000057593 CDS Human protein_coding chr13:113765026 chr13:113765027 nonsynonymous SNV 0.113 2 22 hm5C_associated_SNPs_122470 0 0 1 0 1 F7 chr13:113765004 3'AG 113765004 Downstream 24bp
chr10 97602250 97602250 1 + A G GBM 97602247 + 97602227 97602267 41 CCACGGCAGGCATGCGGTTGCTCAGGTATAGCAGCATGTAG CCACGGCAGGCATGCGGTTGCTCGGGTATAGCAGCATGTAG < 41bp 0.482738902082191 0.714285695592312 0.43048772 0.37306732 prediction 0.428571391184625 Functional Gain - ENTPD1 ENSG00000138185 CDS Human protein_coding chr10:97602247 chr10:97602250 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_122472 0 0 0 0 1 ENTPD1 chr10:97602251 5'GT 97602251 Upstream 2bp
chr10 71849844 71849844 1 + C T rs114922371 71849843 + 71849823 71849863 41 TCTAGAATTGGCCGGCAATGCCGCGAGGGACAACAAGAAGG TCTAGAATTGGCCGGCAATGCTGCGAGGGACAACAAGAAGG < 41bp 0.604281960558655 0.818566666765302 0.26267827 0.27520293 prediction 0.428569412413293 Functional Gain - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71849843 chr10:71849844 synonymous SNV . 0 22 hm5C_associated_SNPs_122473 0 0 1 0 2 H2AFY2 chr10:71849816 3'AG 71849816 Downstream 29bp
chr10 71849844 71849844 1 + C T rs114922371 71849843 + 71849823 71849863 41 TCTAGAATTGGCCGGCAATGCCGCGAGGGACAACAAGAAGG TCTAGAATTGGCCGGCAATGCTGCGAGGGACAACAAGAAGG < 41bp 0.604281960558655 0.818566666765302 0.26267827 0.27520293 prediction 0.428569412413293 Functional Gain - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71849843 chr10:71849844 synonymous SNV . 0 22 hm5C_associated_SNPs_122473 0 0 1 0 2 H2AFY2 chr10:71849922 5'GT 71849922 Upstream 79bp
chr12 104067770 104067770 1 + C A BLCA 104067766 + 104067746 104067786 41 TGGCACATGCAGAGACGGCTCTGCCGGGAGACTCTGTGATA TGGCACATGCAGAGACGGCTCTGCAGGGAGACTCTGTGATA < 41bp 0.313555054396188 0.714284230472888 0.0585185 0.2377998 prediction 0.428568460945776 Functional Gain - STAB2 ENSG00000136011 CDS Human protein_coding chr12:104067766 chr12:104067770 synonymous SNV . 0 25 hm5C_associated_SNPs_122474 0 0 0 0 2 STAB2 chr12:104067685 3'AG 104067685 Downstream 86bp
chr12 104067770 104067770 1 + C A BLCA 104067766 + 104067746 104067786 41 TGGCACATGCAGAGACGGCTCTGCCGGGAGACTCTGTGATA TGGCACATGCAGAGACGGCTCTGCAGGGAGACTCTGTGATA < 41bp 0.313555054396188 0.714284230472888 0.0585185 0.2377998 prediction 0.428568460945776 Functional Gain - STAB2 ENSG00000136011 CDS Human protein_coding chr12:104067766 chr12:104067770 synonymous SNV . 0 25 hm5C_associated_SNPs_122474 0 0 0 0 2 STAB2 chr12:104067865 5'GT 104067865 Upstream 96bp
chrX 46951595 46951595 1 + A G UCEC 46951592 + 46951572 46951612 41 CGAGGGTCTTTTGAGGCAACCTGAAGCTGGTGGAATTTTCA CGAGGGTCTTTTGAGGCAACCTGGAGCTGGTGGAATTTTCA < 41bp 0.576679015760196 0.790960905589626 0.7863684 0.8894559 prediction 0.42856377965886 Functional Gain - RGN ENSG00000130988 CDS Human protein_coding chrX:46951592 chrX:46951595 nonsynonymous SNV 0.753 0 24 hm5C_associated_SNPs_122476 0 0 0 0 1 RGN chrX:46951614 5'GT 46951614 Upstream 20bp
chr20 30681783 30681783 1 + C T SARC 30681782 + 30681762 30681802 41 ATTGCTGACTTTGGCCTGGCCCGGGTCATTGAGGACAACGA ATTGCTGACTTTGGCCTGGCCTGGGTCATTGAGGACAACGA < 41bp 0.596044138752754 0.810323403388901 0.42945206 0.31259596 prediction 0.428558529272294 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30681782 chr20:30681783 nonsynonymous SNV 0.524 5 22 hm5C_associated_SNPs_122477 0 0 0 0 1 HCK chr20:30681819 5'GT 30681819 Upstream 37bp
chr5 251215 251215 1 + C T STAD 251214 + 251194 251234 41 AAGCACCTGAAGACGTTCGACCGGGGTGAGCAGACAGTGGG AAGCACCTGAAGACGTTCGACTGGGGTGAGCAGACAGTGGG < 41bp 0.5933256699112 0.807603625800812 0.76887095 0.3692609 prediction 0.428555911779225 Functional Gain - SDHA ENSG00000073578 CDS Human protein_coding chr5:251214 chr5:251215 nonsynonymous SNV 0.937 4 22 hm5C_associated_SNPs_122478 3 0 0 0 1 SDHA chr5:251218 5'GT 251218 Upstream 4bp
chr16 3550998 3550998 1 + T G rs79384355 3550996 + 3550976 3551016 41 CCATTGGTTGCCATAGAGATCGTCGAGCGCTGGGCCTGTGA CCATTGGTTGCCATAGAGATCGGCGAGCGCTGGGCCTGTGA < 41bp 0.372032500365583 0.714275726004079 0.3331975 0.8527783 prediction 0.428551452008157 Functional Gain - CLUAP1 ENSG00000263212 ncRNA_intronic Human protein_coding chr16:3550996 chr16:3550998 . . 0 23 hm5C_associated_SNPs_122481 0 0 1 0 1 CLUAP1 chr16:3551089 5'GT 3551089 Upstream 92bp
chr9 82187749 82187749 1 + C A LGG 82187748 + 82187728 82187768 41 TGTACCCGCAGACCAGACACCCAGTGAGTGCGGGCGGCGGG TGTACCCGCAGACCAGACACCAAGTGAGTGCGGGCGGCGGG < 41bp 0.474603519643669 0.714272844947872 0.21660307 0.46004745 prediction 0.428545689895744 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82187748 chr9:82187749 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_122484 0 0 0 0 1 TLE4 chr9:82187750 5'GT 82187750 Upstream 2bp
chr8 79601604 79601604 1 + A G LGG 79601601 + 79601581 79601621 41 AGGAAAACCAACTTCTCGGACACAGGTGGTAAGTTCAGTTT AGGAAAACCAACTTCTCGGACACGGGTGGTAAGTTCAGTTT < 41bp 0.515874800647466 0.730145916230937 0.17252666 0.23525059 prediction 0.428542231166941 Functional Gain - ZC2HC1A ENSG00000104427 CDS Human protein_coding chr8:79601601 chr8:79601604 nonsynonymous SNV 0.981 4 24 hm5C_associated_SNPs_122485 0 0 0 0 1 ZC2HC1A chr8:79601608 5'GT 79601608 Upstream 5bp
chr14 75761211 75761211 1 + C G rs3825702 75761210 + 75761190 75761230 41 GGGGGCCCAGAGAGAGGGCGCCGCGATGGATGAATGAGCTG GGGGGCCCAGAGAGAGGGCGCGGCGATGGATGAATGAGCTG < 41bp 0.653152114231812 0.867421992549768 0.31280547 0.52146494 prediction 0.428539756635912 Functional Gain - LINC01220 ENSG00000259687 ncRNA_exonic Human lincRNA chr14:75761210 chr14:75761211 . . 0 22 hm5C_associated_SNPs_122486 0 0 0 0 1 LINC01220 chr14:75761244 5'GT 75761244 Upstream 34bp
chr19 5667401 5667401 1 + C T UCEC 5667400 + 5667380 5667420 41 CATGGCCGAAGAGAGGATGACCGGTCATGGCAGGGCACGGC CATGGCCGAAGAGAGGATGACTGGTCATGGCAGGGCACGGC < 41bp 0.45813204977488 0.714268558922897 0.34805882 0.123460054 prediction 0.428537117845794 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5667400 chr19:5667401 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_122487 0 0 1 0 3 SAFB chr19:5667358 3'AG 5667358 Downstream 44bp
chr19 5667401 5667401 1 + C T UCEC 5667400 + 5667380 5667420 41 CATGGCCGAAGAGAGGATGACCGGTCATGGCAGGGCACGGC CATGGCCGAAGAGAGGATGACTGGTCATGGCAGGGCACGGC < 41bp 0.45813204977488 0.714268558922897 0.34805882 0.123460054 prediction 0.428537117845794 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5667400 chr19:5667401 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_122487 0 0 1 0 3 SAFB chr19:5667364 3'AG 5667364 Downstream 38bp
chr19 5667401 5667401 1 + C T UCEC 5667400 + 5667380 5667420 41 CATGGCCGAAGAGAGGATGACCGGTCATGGCAGGGCACGGC CATGGCCGAAGAGAGGATGACTGGTCATGGCAGGGCACGGC < 41bp 0.45813204977488 0.714268558922897 0.34805882 0.123460054 prediction 0.428537117845794 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5667400 chr19:5667401 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_122487 0 0 1 0 3 SAFB chr19:5667461 5'GT 5667461 Upstream 61bp
chr11 8940924 8940924 1 + C T SKCM 8940923 + 8940903 8940943 41 ACCTCTACATAGAAGTATATCCAGGGACCTATTCTGTCACT ACCTCTACATAGAAGTATATCTAGGGACCTATTCTGTCACT < 41bp 0.510685130754424 0.724950218789834 0.54926753 0.11462468 prediction 0.428530176070819 Functional Gain - AKIP1 ENSG00000166452 CDS Human protein_coding chr11:8940923 chr11:8940924 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_122489 0 0 1 0 1 AKIP1 chr11:8940884 3'AG 8940884 Downstream 41bp
chr17 78169047 78169047 1 + C T rs145876317 78169046 + 78169026 78169066 41 CGCGAGCTGGTGGACAGCTTCCGCTCCAGCAGCCCCGCGCC CGCGAGCTGGTGGACAGCTTCTGCTCCAGCAGCCCCGCGCC < 41bp 0.454987899330592 0.71426426599199 0.06861842 0.08778554 prediction 0.42852853198398 Functional Gain - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78169046 chr17:78169047 nonsynonymous SNV 0.999 0 22 hm5C_associated_SNPs_122490 0 0 0 0 2 CARD14 chr17:78168990 3'AG 78168990 Downstream 58bp
chr17 78169047 78169047 1 + C T rs145876317 78169046 + 78169026 78169066 41 CGCGAGCTGGTGGACAGCTTCCGCTCCAGCAGCCCCGCGCC CGCGAGCTGGTGGACAGCTTCTGCTCCAGCAGCCCCGCGCC < 41bp 0.454987899330592 0.71426426599199 0.06861842 0.08778554 prediction 0.42852853198398 Functional Gain - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78169046 chr17:78169047 nonsynonymous SNV 0.999 0 22 hm5C_associated_SNPs_122490 0 0 0 0 2 CARD14 chr17:78169132 5'GT 78169132 Upstream 86bp
chr17 7762765 7762765 1 + C A STAD 7762761 + 7762741 7762781 41 TCTCCCCTATAACTCACATGCTGCCAGCTACACGTGGAAAT TCTCCCCTATAACTCACATGCTGCAAGCTACACGTGGAAAT < 41bp 0.289422929451987 0.714258477288068 0.027320534 0.02239266 prediction 0.428516954576135 Functional Gain - CYB5D1 ENSG00000182224 CDS Human protein_coding chr17:7762761 chr17:7762765 synonymous SNV . 0 25 hm5C_associated_SNPs_122492 0 0 0 0 1 CYB5D1 chr17:7762700 3'AG 7762700 Downstream 66bp
chr1 34667790 34667790 1 + C A LUAD 34667786 + 34667766 34667806 41 TGACCTCAGCAACCCTGAACCAGCCACTCTGGCTCAACCTG TGACCTCAGCAACCCTGAACCAGCAACTCTGGCTCAACCTG < 41bp 0.278087888222467 0.714258455516029 0.13811204 0.3155858 prediction 0.428516911032059 Functional Gain - C1orf94 ENSG00000142698 CDS Human protein_coding chr1:34667786 chr1:34667790 nonsynonymous SNV 0.913 4 25 hm5C_associated_SNPs_122493 0 0 0 0 1 C1orf94 chr1:34667860 5'GT 34667860 Upstream 71bp
chr1 156106204 156106204 1 + C T UCEC 156106203 + 156106183 156106223 41 GATGAGGAGGGCAAGTTTGTCCGGCTGCGCAACAAGTCCAA GATGAGGAGGGCAAGTTTGTCTGGCTGCGCAACAAGTCCAA < 41bp 0.578055842330748 0.792312352446092 0.7413281 0.5234223 prediction 0.428513020230687 Functional Gain - LMNA ENSG00000160789 CDS Human protein_coding chr1:156106203 chr1:156106204 nonsynonymous SNV 0.996 5 22 hm5C_associated_SNPs_122494 5 0 1 0 1 LMNA chr1:156106227 5'GT 156106227 Upstream 24bp
chr1 154229643 154229643 1 + C T CESC 154229642 + 154229622 154229662 41 CCCAGTGGTCAGTGTCTCCTCCAGTCTCAATAGTGGCAGTA CCCAGTGGTCAGTGTCTCCTCTAGTCTCAATAGTGGCAGTA < 41bp 0.469092520770183 0.714240855534885 0.35424984 0.22391847 prediction 0.42848171106977 Functional Gain - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154229642 chr1:154229643 synonymous SNV . 0 22 hm5C_associated_SNPs_122500 0 0 1 0 1 UBAP2L chr1:154229734 5'GT 154229734 Upstream 92bp
chr20 32856838 32856838 1 + C A rs36093428 32856837 + 32856817 32856857 41 AGTGGTGCGGCCCCGGACCCCCCTATCTGCGCCCTGCGTGG AGTGGTGCGGCCCCGGACCCCACTATCTGCGCCCTGCGTGG < 41bp 0.610683372889446 0.824921181682268 0.1068103 0.06497824 prediction 0.428475617585643 Functional Gain - ASIP ENSG00000101440 CDS Human protein_coding chr20:32856837 chr20:32856838 synonymous SNV . 0 22 hm5C_associated_SNPs_122502 0 0 0 0 1 ASIP chr20:32856797 3'AG 32856797 Downstream 42bp
chr10 29580824 29580824 1 + A G UCEC 29580821 + 29580801 29580841 41 AGGCTGCGGGCATTCTGACCCTCATTGGCTGCCTGGTCACA AGGCTGCGGGCATTCTGACCCTCGTTGGCTGCCTGGTCACA < 41bp 0.464321429382368 0.714227162997662 0.1106818 0.2193962 prediction 0.428454325995325 Functional Gain - LYZL1 ENSG00000120563 CDS Human protein_coding chr10:29580821 chr10:29580824 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_122506 0 0 0 0 1 LYZL1 chr10:29580772 3'AG 29580772 Downstream 53bp
chr19 12185196 12185196 1 + A G COAD 12185193 + 12185173 12185213 41 TAGGAGAAAAATGGAAAGACCAGAACATTGAAGATCAGTAC TAGGAGAAAAATGGAAAGACCAGGACATTGAAGATCAGTAC < 41bp 0.524925390900337 0.73913715127177 0.27463716 0.42618123 prediction 0.428423520742866 Functional Gain - ZNF844 ENSG00000223547 CDS Human protein_coding chr19:12185193 chr19:12185196 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_122512 0 0 0 0 2 ZNF844 chr19:12185176 3'AG 12185176 Downstream 21bp
chr19 12185196 12185196 1 + A G COAD 12185193 + 12185173 12185213 41 TAGGAGAAAAATGGAAAGACCAGAACATTGAAGATCAGTAC TAGGAGAAAAATGGAAAGACCAGGACATTGAAGATCAGTAC < 41bp 0.524925390900337 0.73913715127177 0.27463716 0.42618123 prediction 0.428423520742866 Functional Gain - ZNF844 ENSG00000223547 CDS Human protein_coding chr19:12185193 chr19:12185196 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_122512 0 0 0 0 2 ZNF844 chr19:12185236 5'GT 12185236 Upstream 41bp
chr22 30762215 30762215 1 + C A BLCA 30762211 + 30762191 30762231 41 TTCACGCAGCTGTCCCATGCCGTGCTGCTGGAGCTGGTCAT TTCACGCAGCTGTCCCATGCCGTGATGCTGGAGCTGGTCAT < 41bp 0.300496840146769 0.714206104233693 0.017956465 0.079369694 prediction 0.428412208467386 Functional Gain - CCDC157 ENSG00000187860 CDS Human protein_coding chr22:30762211 chr22:30762215 nonsynonymous SNV 0.817 3 25 hm5C_associated_SNPs_122514 0 0 0 0 1 CCDC157 chr22:30762237 5'GT 30762237 Upstream 23bp
chr4 3449700 3449700 1 + C T UCEC 3449699 + 3449679 3449719 41 AGCCCATCTGCCTGCCCGAGCCCGGCAGCACCTTCCCCGCA AGCCCATCTGCCTGCCCGAGCTCGGCAGCACCTTCCCCGCA < 41bp 0.591079313169664 0.805284000765658 0.64282715 0.2254127 prediction 0.428409375191989 Functional Gain - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3449699 chr4:3449700 nonsynonymous SNV 0.029 1 22 hm5C_associated_SNPs_122515 0 0 0 0 1 HGFAC chr4:3449622 3'AG 3449622 Downstream 79bp
chr12 65672579 65672579 1 + C A rs200778091 65672575 + 65672555 65672595 41 CCGCGGCGGACCCTCCCGCGCCCCCTCTCGCTCTGCCTCTC CCGCGGCGGACCCTCCCGCGCCCCATCTCGCTCTGCCTCTC < 41bp 0.32813329698281 0.714204462262591 0.15115255 0.10790998 prediction 0.428408924525183 Functional Gain - MSRB3 ENSG00000174099 CDS Human protein_coding chr12:65672575 chr12:65672579 nonsynonymous SNV 0.458 0 25 hm5C_associated_SNPs_122516 0 0 0 0 1 MSRB3 chr12:65672645 5'GT 65672645 Upstream 67bp
chr11 93800696 93800696 1 - G T SARC 93800700 - 93800680 93800720 41 AGATTCTCCAACACACATATCAGGCTCCGGGAAGTTTCCGA AGATTCTCCAACACACATATCAGGATCCGGGAAGTTTCCGA < 41bp 0.318285527115461 0.714197631256339 0.3905993 0.4327248 prediction 0.428395262512677 Functional Gain - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93800700 chr11:93800696 nonsynonymous SNV 0.977 1 25 hm5C_associated_SNPs_122517 0 0 0 0 1 HEPHL1 chr11:93800597 5'GT 93800597 Upstream 100bp
chr2 1204825 1204825 1 + C T LAML 1204824 + 1204804 1204844 41 TCCTCGCCCATAGCTAAGGACCCGAGGTATGAGAAGCGCTG TCCTCGCCCATAGCTAAGGACTCGAGGTATGAGAAGCGCTG < 41bp 0.449608404527836 0.714195112171837 0.33922073 0.622082 prediction 0.428390224343675 Functional Gain - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1204824 chr2:1204825 nonsynonymous SNV 0.990 2 22 hm5C_associated_SNPs_122518 0 0 0 0 2 SNTG2 chr2:1204789 3'AG 1204789 Downstream 37bp
chr2 1204825 1204825 1 + C T LAML 1204824 + 1204804 1204844 41 TCCTCGCCCATAGCTAAGGACCCGAGGTATGAGAAGCGCTG TCCTCGCCCATAGCTAAGGACTCGAGGTATGAGAAGCGCTG < 41bp 0.449608404527836 0.714195112171837 0.33922073 0.622082 prediction 0.428390224343675 Functional Gain - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1204824 chr2:1204825 nonsynonymous SNV 0.990 2 22 hm5C_associated_SNPs_122518 0 0 0 0 2 SNTG2 chr2:1204916 5'GT 1204916 Upstream 92bp
chr22 39355689 39355689 1 + C A LUAD 39355688 + 39355668 39355708 41 CACAGGGGCTTTCTACACAACCAGGTGACCGACCCAGCCAT CACAGGGGCTTTCTACACAACAAGGTGACCGACCCAGCCAT < 41bp 0.625775879063188 0.839970104934981 0.2201879 0.18380994 prediction 0.428388451743588 Functional Gain - APOBEC3A;APOBEC3A_B ENSG00000128383 CDS Human protein_coding chr22:39355688 chr22:39355689 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_122520 0 0 0 0 2 APOBEC3A;APOBEC3A_B chr22:39355601 3'AG 39355601 Downstream 89bp
chr22 39355689 39355689 1 + C A LUAD 39355688 + 39355668 39355708 41 CACAGGGGCTTTCTACACAACCAGGTGACCGACCCAGCCAT CACAGGGGCTTTCTACACAACAAGGTGACCGACCCAGCCAT < 41bp 0.625775879063188 0.839970104934981 0.2201879 0.18380994 prediction 0.428388451743588 Functional Gain - APOBEC3A;APOBEC3A_B ENSG00000128383 CDS Human protein_coding chr22:39355688 chr22:39355689 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_122520 0 0 0 0 2 APOBEC3A;APOBEC3A_B chr22:39355691 5'GT 39355691 Upstream 3bp
chr1 31973138 31973138 1 + T C rs56235358 31973136 + 31973116 31973156 41 TTCTATGTGGAGTCTGTCTGCATGGCCGCTGTCAACATCAT TTCTATGTGGAGTCTGTCTGCACGGCCGCTGTCAACATCAT < 41bp 0.541256750714109 0.755450750178942 0.22157148 0.2204242 prediction 0.428387998929666 Functional Gain - LINC01225 ENSG00000228682 ncRNA_exonic Human other chr1:31973136 chr1:31973138 . . 0 23 hm5C_associated_SNPs_122521 0 0 0 0 1 LINC01225 chr1:31973182 5'GT 31973182 Upstream 45bp
chr2 207460865 207460865 1 + C A rs113518350 207460864 + 207460844 207460884 41 CCAGTTAGGAACCTTCACCCCCCCAAGGATGAAGGACCCAA CCAGTTAGGAACCTTCACCCCACCAAGGATGAAGGACCCAA < 41bp 0.46338988986881 0.714183357670021 0.06950897 0.06158191 prediction 0.428366715340043 Functional Gain - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207460864 chr2:207460865 nonsynonymous SNV 0.332 0 22 hm5C_associated_SNPs_122524 0 0 0 0 1 ADAM23 chr2:207460775 3'AG 207460775 Downstream 91bp
chr10 18276506 18276506 1 + C A LUAD 18276502 + 18276482 18276522 41 CATAGCTGTGAGGAGAACTACAGGCTTATCTTACAGCTGTT CATAGCTGTGAGGAGAACTACAGGATTATCTTACAGCTGTT < 41bp 0.725283796853864 0.939465205569655 0.8986772 0.89625096 prediction 0.428362817431582 Functional Gain - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18276502 chr10:18276506 nonsynonymous SNV 0.932 1 25 hm5C_associated_SNPs_122527 0 0 0 0 2 SLC39A12 chr10:18276408 3'AG 18276408 Downstream 99bp
chr10 18276506 18276506 1 + C A LUAD 18276502 + 18276482 18276522 41 CATAGCTGTGAGGAGAACTACAGGCTTATCTTACAGCTGTT CATAGCTGTGAGGAGAACTACAGGATTATCTTACAGCTGTT < 41bp 0.725283796853864 0.939465205569655 0.8986772 0.89625096 prediction 0.428362817431582 Functional Gain - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18276502 chr10:18276506 nonsynonymous SNV 0.932 1 25 hm5C_associated_SNPs_122527 0 0 0 0 2 SLC39A12 chr10:18276580 5'GT 18276580 Upstream 75bp
chr1 45169782 45169782 1 + C T COAD 45169781 + 45169761 45169801 41 CCAATCATTGGGACCACACACCCCAGCATCGTGGACTGCGT CCAATCATTGGGACCACACACTCCAGCATCGTGGACTGCGT < 41bp 0.636809087650379 0.850987778959437 0.26316082 0.9332918 prediction 0.428357382618115 Functional Gain - C1orf228 ENSG00000198520 CDS Human protein_coding chr1:45169781 chr1:45169782 nonsynonymous SNV 0.991 3 22 hm5C_associated_SNPs_122529 0 0 0 0 2 C1orf228 chr1:45169761 3'AG 45169761 Downstream 22bp
chr1 45169782 45169782 1 + C T COAD 45169781 + 45169761 45169801 41 CCAATCATTGGGACCACACACCCCAGCATCGTGGACTGCGT CCAATCATTGGGACCACACACTCCAGCATCGTGGACTGCGT < 41bp 0.636809087650379 0.850987778959437 0.26316082 0.9332918 prediction 0.428357382618115 Functional Gain - C1orf228 ENSG00000198520 CDS Human protein_coding chr1:45169781 chr1:45169782 nonsynonymous SNV 0.991 3 22 hm5C_associated_SNPs_122529 0 0 0 0 2 C1orf228 chr1:45169845 5'GT 45169845 Upstream 64bp
chr7 5642987 5642987 1 + C G rs111761155 5642983 + 5642963 5643003 41 AAAAGTGTGCCTTCCGTACCCACACGGGCAAGTACTGGACG AAAAGTGTGCCTTCCGTACCCACAGGGGCAAGTACTGGACG < 41bp 0.423062768330384 0.714177391805015 0.9002799 0.9142038 prediction 0.428354783610031 Functional Gain - FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5642983 chr7:5642987 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_122531 0 0 1 0 2 FSCN1 chr7:5642888 3'AG 5642888 Downstream 100bp
chr7 5642987 5642987 1 + C G rs111761155 5642983 + 5642963 5643003 41 AAAAGTGTGCCTTCCGTACCCACACGGGCAAGTACTGGACG AAAAGTGTGCCTTCCGTACCCACAGGGGCAAGTACTGGACG < 41bp 0.423062768330384 0.714177391805015 0.9002799 0.9142038 prediction 0.428354783610031 Functional Gain - FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5642983 chr7:5642987 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_122531 0 0 1 0 2 FSCN1 chr7:5643044 5'GT 5643044 Upstream 58bp
chr1 22986024 22986024 1 + C A UCEC 22986023 + 22986003 22986043 41 CCTGGGCCTAATCGATATCTCCCAGGCCCAGCTCAGCTGCA CCTGGGCCTAATCGATATCTCACAGGCCCAGCTCAGCTGCA < 41bp 0.620048766861966 0.834222721040882 0.12605563 0.28612173 prediction 0.428347908357833 Functional Gain - C1QB ENSG00000173369 CDS Human protein_coding chr1:22986023 chr1:22986024 synonymous SNV . 0 22 hm5C_associated_SNPs_122532 0 0 0 0 1 C1QB chr1:22985933 3'AG 22985933 Downstream 92bp
chr4 69337232 69337232 1 + T C LAML 69337229 + 69337209 69337249 41 CTGTTGATTTGTAGATTTCACTCTACTGAGGATCCTGAAAC CTGTTGATTTGTAGATTTCACTCCACTGAGGATCCTGAAAC < 41bp 0.539915482968603 0.754088087232513 0.4419878 0.9083203 prediction 0.428345208527821 Functional Gain - TMPRSS11E ENSG00000087128 CDS Human protein_coding chr4:69337229 chr4:69337232 synonymous SNV . 0 24 hm5C_associated_SNPs_122533 0 0 0 0 1 TMPRSS11E chr4:69337178 3'AG 69337178 Downstream 55bp
chr20 20079402 20079402 1 + C A LUSC 20079401 + 20079381 20079421 41 CTTTCCACGGACTCTGTTTCCCACATCCTGATGACGTTCTG CTTTCCACGGACTCTGTTTCCAACATCCTGATGACGTTCTG < 41bp 0.450172530284985 0.714167249388485 0.2194829 0.25016698 prediction 0.428334498776969 Functional Gain - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20079401 chr20:20079402 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_122537 0 0 0 0 1 CFAP61 chr20:20079458 5'GT 20079458 Upstream 57bp
chr19 54515245 54515245 1 + C T COAD 54515244 + 54515224 54515264 41 CCTGGAGGTGTTCCGGCATTCCGTGAGGGCCCTGCTGCAGA CCTGGAGGTGTTCCGGCATTCTGTGAGGGCCCTGCTGCAGA < 41bp 0.56195285662468 0.776117199451658 0.32306015 0.25558525 prediction 0.428328685653955 Functional Gain - CACNG6 ENSG00000130433 CDS Human protein_coding chr19:54515244 chr19:54515245 synonymous SNV . 0 22 hm5C_associated_SNPs_122538 0 0 0 0 1 CACNG6 chr19:54515205 3'AG 54515205 Downstream 41bp
chr11 64337279 64337279 1 + C T HNSC 64337278 + 64337258 64337298 41 TGGTTGTGCTGTTCTTCCTCCCGGAGACCCAGGGACTTCCG TGGTTGTGCTGTTCTTCCTCCTGGAGACCCAGGGACTTCCG < 41bp 0.563298634074777 0.777462556897133 0.92871284 0.5540083 prediction 0.428327845644713 Functional Gain - SLC22A11 ENSG00000168065 CDS Human protein_coding chr11:64337278 chr11:64337279 nonsynonymous SNV 0.152 2 22 hm5C_associated_SNPs_122539 0 0 0 0 1 SLC22A11 chr11:64337330 5'GT 64337330 Upstream 52bp
chr1 11836540 11836540 1 + C A rs540542008 11836539 + 11836519 11836559 41 AGGACGTGAGGCTGTCTACACCGCAGGCCCTGGAGCCTGTG AGGACGTGAGGCTGTCTACACAGCAGGCCCTGGAGCCTGTG < 41bp 0.599478140013102 0.813640880596701 0.2662406 0.31435448 prediction 0.428325481167199 Functional Gain - C1orf167 ENSG00000215910 CDS Human protein_coding chr1:11836539 chr1:11836540 synonymous SNV . 0 22 hm5C_associated_SNPs_122540 0 0 0 0 1 C1orf167 chr1:11836521 3'AG 11836521 Downstream 20bp
chr4 38682300 38682300 1 + A G rs114311199 38682297 + 38682277 38682317 41 CAAGAGGCCATGGACCCTGTCTCAGTGGTAAGTTTTCCAAG CAAGAGGCCATGGACCCTGTCTCGGTGGTAAGTTTTCCAAG < 41bp 0.574305955543148 0.788466391363722 0.022313803 0.034260154 prediction 0.428320871641148 Functional Gain - KLF3 ENSG00000109787 CDS Human protein_coding chr4:38682297 chr4:38682300 synonymous SNV . 0 24 hm5C_associated_SNPs_122541 0 0 1 0 2 KLF3 chr4:38682208 3'AG 38682208 Downstream 93bp
chr4 38682300 38682300 1 + A G rs114311199 38682297 + 38682277 38682317 41 CAAGAGGCCATGGACCCTGTCTCAGTGGTAAGTTTTCCAAG CAAGAGGCCATGGACCCTGTCTCGGTGGTAAGTTTTCCAAG < 41bp 0.574305955543148 0.788466391363722 0.022313803 0.034260154 prediction 0.428320871641148 Functional Gain - KLF3 ENSG00000109787 CDS Human protein_coding chr4:38682297 chr4:38682300 synonymous SNV . 0 24 hm5C_associated_SNPs_122541 0 0 1 0 2 KLF3 chr4:38682303 5'GT 38682303 Upstream 4bp
chr14 104493079 104493079 1 + T C UCEC 104493076 + 104493056 104493096 41 AGTCTCTTGTTTGTGGCAAGCACTGGAGTGACGGGGCCAGC AGTCTCTTGTTTGTGGCAAGCACCGGAGTGACGGGGCCAGC < 41bp 0.510967567529536 0.725114235739602 0.25777268 0.3160381 prediction 0.428293336420132 Functional Gain - TDRD9 ENSG00000156414 CDS Human protein_coding chr14:104493076 chr14:104493079 nonsynonymous SNV 0.943 4 24 hm5C_associated_SNPs_122548 0 0 0 0 1 TDRD9 chr14:104493016 3'AG 104493016 Downstream 64bp
chr5 167915643 167915643 1 + C A rs200285372 167915642 + 167915622 167915662 41 TCTCTGACTGCTGAAATTGACCGGTTGAAAAACTGTGGCTG TCTCTGACTGCTGAAATTGACAGGTTGAAAAACTGTGGCTG < 41bp 0.627970439189685 0.842115818462593 0.4319259 0.8546245 prediction 0.428290758545816 Functional Gain - RARS ENSG00000113643 CDS Human protein_coding chr5:167915642 chr5:167915643 synonymous SNV . 0 22 hm5C_associated_SNPs_122549 0 0 1 0 2 RARS chr5:167915607 3'AG 167915607 Downstream 37bp
chr5 167915643 167915643 1 + C A rs200285372 167915642 + 167915622 167915662 41 TCTCTGACTGCTGAAATTGACCGGTTGAAAAACTGTGGCTG TCTCTGACTGCTGAAATTGACAGGTTGAAAAACTGTGGCTG < 41bp 0.627970439189685 0.842115818462593 0.4319259 0.8546245 prediction 0.428290758545816 Functional Gain - RARS ENSG00000113643 CDS Human protein_coding chr5:167915642 chr5:167915643 synonymous SNV . 0 22 hm5C_associated_SNPs_122549 0 0 1 0 2 RARS chr5:167915741 5'GT 167915741 Upstream 99bp
chr1 22973781 22973781 1 + C A LUSC 22973780 + 22973760 22973800 41 GAAGGGAGAACCCGGCTTACCCGGCCATCCTGGGAAAAATG GAAGGGAGAACCCGGCTTACCAGGCCATCCTGGGAAAAATG < 41bp 0.450903766878024 0.714144924638351 0.67019707 0.8971716 prediction 0.428289849276701 Functional Gain - C1QC ENSG00000159189 CDS Human protein_coding chr1:22973780 chr1:22973781 synonymous SNV . 0 22 hm5C_associated_SNPs_122550 0 0 0 0 1 C1QC chr1:22973720 3'AG 22973720 Downstream 62bp
chr7 116381066 116381066 1 + C A GBM 116381062 + 116381042 116381082 41 CATGGACTCAACAGATCTGTCTGCCTGCAATCTACAAGGTA CATGGACTCAACAGATCTGTCTGCATGCAATCTACAAGGTA < 41bp 0.31476727443907 0.714142096455435 0.48227626 0.81755304 prediction 0.42828419291087 Functional Gain - MET ENSG00000105976 CDS Human protein_coding chr7:116381062 chr7:116381066 nonsynonymous SNV 0.284 5 25 hm5C_associated_SNPs_122551 0 0 1 0 2 MET chr7:116380990 3'AG 116380990 Downstream 77bp
chr7 116381066 116381066 1 + C A GBM 116381062 + 116381042 116381082 41 CATGGACTCAACAGATCTGTCTGCCTGCAATCTACAAGGTA CATGGACTCAACAGATCTGTCTGCATGCAATCTACAAGGTA < 41bp 0.31476727443907 0.714142096455435 0.48227626 0.81755304 prediction 0.42828419291087 Functional Gain - MET ENSG00000105976 CDS Human protein_coding chr7:116381062 chr7:116381066 nonsynonymous SNV 0.284 5 25 hm5C_associated_SNPs_122551 0 0 1 0 2 MET chr7:116381079 5'GT 116381079 Upstream 14bp
chr1 15956966 15956966 1 + C T LUAD 15956965 + 15956945 15956985 41 TTGGACAATCCAGCCTTGCTCCGAGATATGTTGCTGGCCAA TTGGACAATCCAGCCTTGCTCTGAGATATGTTGCTGGCCAA < 41bp 0.596620058926863 0.810761585443165 0.78744894 0.32652557 prediction 0.428283053032605 Functional Gain - DDI2 ENSG00000197312 CDS Human protein_coding chr1:15956965 chr1:15956966 stopgain 1.000 0 22 hm5C_associated_SNPs_122552 0 0 1 0 1 DDI2 chr1:15957056 5'GT 15957056 Upstream 91bp
chrX 154464638 154464638 1 + C A LUSC 154464634 + 154464614 154464654 41 CTTTCTTCGAGATCAATTTACTACCACAGAAGTCAGTATCC CTTTCTTCGAGATCAATTTACTACAACAGAAGTCAGTATCC < 41bp 0.292315503102436 0.714139628727466 0.07713112 0.49736118 prediction 0.428279257454933 Functional Gain - VBP1 ENSG00000155959 CDS Human protein_coding chrX:154464634 chrX:154464638 synonymous SNV . 0 25 hm5C_associated_SNPs_122553 0 0 1 0 1 VBP1 chrX:154464648 5'GT 154464648 Upstream 11bp
chr7 23809303 23809303 1 + A G rs55860134 23809300 + 23809280 23809320 41 GGATCACTGATTTCAGAAGACGCAATGGATAATATTGATGA GGATCACTGATTTCAGAAGACGCGATGGATAATATTGATGA < 41bp 0.541657147795477 0.755775456665079 0.1962969 0.2754283 prediction 0.428236617739204 Functional Gain - STK31 ENSG00000196335 CDS Human protein_coding chr7:23809300 chr7:23809303 synonymous SNV . 0 24 hm5C_associated_SNPs_122561 0 0 0 0 2 STK31 chr7:23809259 3'AG 23809259 Downstream 45bp
chr7 23809303 23809303 1 + A G rs55860134 23809300 + 23809280 23809320 41 GGATCACTGATTTCAGAAGACGCAATGGATAATATTGATGA GGATCACTGATTTCAGAAGACGCGATGGATAATATTGATGA < 41bp 0.541657147795477 0.755775456665079 0.1962969 0.2754283 prediction 0.428236617739204 Functional Gain - STK31 ENSG00000196335 CDS Human protein_coding chr7:23809300 chr7:23809303 synonymous SNV . 0 24 hm5C_associated_SNPs_122561 0 0 0 0 2 STK31 chr7:23809375 5'GT 23809375 Upstream 73bp
chrX 149887149 149887149 1 + C T SKCM 149887148 + 149887128 149887168 41 TGGAAGAGGCTCCACTTTTCCCAGGAGAATCAATTAAAGCC TGGAAGAGGCTCCACTTTTCCTAGGAGAATCAATTAAAGCC < 41bp 0.469140480232272 0.714112292025476 0.45925236 0.22235319 prediction 0.428224584050952 Functional Gain - MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149887148 chrX:149887149 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_122564 0 0 1 2 1 MTMR1 chrX:149887172 5'GT 149887172 Upstream 24bp
chr12 25249925 25249925 1 + C T BLCA 25249924 + 25249904 25249944 41 AAGAGTATAAAGTTTCTTAGCCAGTGTGCAGCACGAGTGGC AAGAGTATAAAGTTTCTTAGCTAGTGTGCAGCACGAGTGGC < 41bp 0.464329370137271 0.714111694041592 0.28020188 0.23301739 prediction 0.428223388083184 Functional Gain - LRMP ENSG00000118308 CDS Human protein_coding chr12:25249924 chr12:25249925 stopgain 0.519 1 22 hm5C_associated_SNPs_122565 0 0 0 0 2 LRMP chr12:25249844 3'AG 25249844 Downstream 82bp
chr12 25249925 25249925 1 + C T BLCA 25249924 + 25249904 25249944 41 AAGAGTATAAAGTTTCTTAGCCAGTGTGCAGCACGAGTGGC AAGAGTATAAAGTTTCTTAGCTAGTGTGCAGCACGAGTGGC < 41bp 0.464329370137271 0.714111694041592 0.28020188 0.23301739 prediction 0.428223388083184 Functional Gain - LRMP ENSG00000118308 CDS Human protein_coding chr12:25249924 chr12:25249925 stopgain 0.519 1 22 hm5C_associated_SNPs_122565 0 0 0 0 2 LRMP chr12:25249978 5'GT 25249978 Upstream 54bp
chr15 84582036 84582036 1 + C T SKCM 84582035 + 84582015 84582055 41 ATGTGATGAGAGCCCGGCCTCCCGAGAGCTAGACATCCCTC ATGTGATGAGAGCCCGGCCTCTCGAGAGCTAGACATCCCTC < 41bp 0.605471986581197 0.819581250981817 0.25637668 0.41143507 prediction 0.428218528801241 Functional Gain - ADAMTSL3 ENSG00000156218 CDS Human protein_coding chr15:84582035 chr15:84582036 synonymous SNV . 0 22 hm5C_associated_SNPs_122566 0 0 0 0 1 ADAMTSL3 chr15:84582130 5'GT 84582130 Upstream 95bp
chr7 99051674 99051674 1 + C A THCA 99051673 + 99051653 99051693 41 CTCCCAATCAGCAGAGAACCCCGCAGGTCATCGGGGTCATG CTCCCAATCAGCAGAGAACCCAGCAGGTCATCGGGGTCATG < 41bp 0.625258858224611 0.839367391033998 0.17888436 0.28368324 prediction 0.428217065618774 Functional Gain - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99051673 chr7:99051674 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_122567 0 0 1 0 4 CPSF4 chr7:99051589 3'AG 99051589 Downstream 86bp
chr7 99051674 99051674 1 + C A THCA 99051673 + 99051653 99051693 41 CTCCCAATCAGCAGAGAACCCCGCAGGTCATCGGGGTCATG CTCCCAATCAGCAGAGAACCCAGCAGGTCATCGGGGTCATG < 41bp 0.625258858224611 0.839367391033998 0.17888436 0.28368324 prediction 0.428217065618774 Functional Gain - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99051673 chr7:99051674 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_122567 0 0 1 0 4 CPSF4 chr7:99051664 3'AG 99051664 Downstream 11bp
chr7 99051674 99051674 1 + C A THCA 99051673 + 99051653 99051693 41 CTCCCAATCAGCAGAGAACCCCGCAGGTCATCGGGGTCATG CTCCCAATCAGCAGAGAACCCAGCAGGTCATCGGGGTCATG < 41bp 0.625258858224611 0.839367391033998 0.17888436 0.28368324 prediction 0.428217065618774 Functional Gain - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99051673 chr7:99051674 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_122567 0 0 1 0 4 CPSF4 chr7:99051667 3'AG 99051667 Downstream 8bp
chr7 99051674 99051674 1 + C A THCA 99051673 + 99051653 99051693 41 CTCCCAATCAGCAGAGAACCCCGCAGGTCATCGGGGTCATG CTCCCAATCAGCAGAGAACCCAGCAGGTCATCGGGGTCATG < 41bp 0.625258858224611 0.839367391033998 0.17888436 0.28368324 prediction 0.428217065618774 Functional Gain - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99051673 chr7:99051674 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_122567 0 0 1 0 4 CPSF4 chr7:99051759 5'GT 99051759 Upstream 86bp
chr19 48255791 48255791 1 + A G COAD 48255788 + 48255768 48255808 41 GCGGCCAGCACGCCTGCACACCAAGCCGTCCCAGGCACCCG GCGGCCAGCACGCCTGCACACCAGGCCGTCCCAGGCACCCG < 41bp 0.457737558040634 0.714107336352906 0.18099952 0.25732207 prediction 0.428214672705811 Functional Gain - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48255788 chr19:48255791 nonsynonymous SNV 0.135 3 24 hm5C_associated_SNPs_122569 0 0 1 0 2 NOP53 chr19:48255769 3'AG 48255769 Downstream 23bp
chr19 48255791 48255791 1 + A G COAD 48255788 + 48255768 48255808 41 GCGGCCAGCACGCCTGCACACCAAGCCGTCCCAGGCACCCG GCGGCCAGCACGCCTGCACACCAGGCCGTCCCAGGCACCCG < 41bp 0.457737558040634 0.714107336352906 0.18099952 0.25732207 prediction 0.428214672705811 Functional Gain - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48255788 chr19:48255791 nonsynonymous SNV 0.135 3 24 hm5C_associated_SNPs_122569 0 0 1 0 2 NOP53 chr19:48255864 5'GT 48255864 Upstream 74bp
chr19 51738913 51738913 1 + C A LUAD 51738912 + 51738892 51738932 41 CAGGAATGACACCCACCCTACCACAGGGTCAGCCTCCCCGG CAGGAATGACACCCACCCTACAACAGGGTCAGCCTCCCCGG < 41bp 0.618334145271629 0.832438956840501 0.102320254 0.42940074 prediction 0.428209623137743 Functional Gain - CD33 ENSG00000105383 CDS Human protein_coding chr19:51738912 chr19:51738913 synonymous SNV . 0 22 hm5C_associated_SNPs_122570 0 0 0 0 1 CD33 chr19:51738931 5'GT 51738931 Upstream 19bp
chrX 135290715 135290715 1 + C T OV 135290714 + 135290694 135290734 41 GCTGGCTGGGCAGCGTTTCACCGCTGTGGAGGACCAGTATT GCTGGCTGGGCAGCGTTTCACTGCTGTGGAGGACCAGTATT < 41bp 0.581954917388828 0.796059627106065 0.25906637 0.353818 prediction 0.428209419434474 Functional Gain - FHL1 ENSG00000022267 CDS Human protein_coding chrX:135290714 chrX:135290715 synonymous SNV . 0 22 hm5C_associated_SNPs_122571 1 0 1 4 1 FHL1 chrX:135290800 5'GT 135290800 Upstream 86bp
chr7 23296641 23296641 1 + C T LUSC 23296640 + 23296620 23296660 41 GAAACCTTTTCCTCACCACCCCGGATGGAGAAGATGGAATT GAAACCTTTTCCTCACCACCCTGGATGGAGAAGATGGAATT < 41bp 0.610250363689014 0.824354060432244 0.12739828 0.06326777 prediction 0.428207393486461 Functional Gain - GPNMB ENSG00000136235 CDS Human protein_coding chr7:23296640 chr7:23296641 synonymous SNV . 0 22 hm5C_associated_SNPs_122573 0 0 0 0 1 GPNMB chr7:23296684 5'GT 23296684 Upstream 44bp
chr2 68607900 68607900 1 + C T SKCM 68607899 + 68607879 68607919 41 AAACAGCAGGACCACTTCTTCCAGGCAGCCTTCCTGGAGGA AAACAGCAGGACCACTTCTTCTAGGCAGCCTTCCTGGAGGA < 41bp 0.609539409910403 0.823635972808682 0.30762598 0.3389002 prediction 0.428193125796559 Functional Gain - PLEK ENSG00000115956 CDS Human protein_coding chr2:68607899 chr2:68607900 stopgain 1.000 1 22 hm5C_associated_SNPs_122575 0 0 0 0 1 PLEK chr2:68607855 3'AG 68607855 Downstream 46bp
chr13 102250578 102250578 1 + C A LUSC 102250574 + 102250554 102250594 41 GGAAGAAGTGTGAGCACCCACAGTCCTGCACGCTGTCAGCT GGAAGAAGTGTGAGCACCCACAGTACTGCACGCTGTCAGCT < 41bp 0.300828865414299 0.714091931018978 0.19771162 0.20164272 prediction 0.428183862037956 Functional Gain - ITGBL1 ENSG00000198542 CDS Human protein_coding chr13:102250574 chr13:102250578 nonsynonymous SNV 0.053 2 25 hm5C_associated_SNPs_122576 0 0 0 0 2 ITGBL1 chr13:102250503 3'AG 102250503 Downstream 76bp
chr13 102250578 102250578 1 + C A LUSC 102250574 + 102250554 102250594 41 GGAAGAAGTGTGAGCACCCACAGTCCTGCACGCTGTCAGCT GGAAGAAGTGTGAGCACCCACAGTACTGCACGCTGTCAGCT < 41bp 0.300828865414299 0.714091931018978 0.19771162 0.20164272 prediction 0.428183862037956 Functional Gain - ITGBL1 ENSG00000198542 CDS Human protein_coding chr13:102250574 chr13:102250578 nonsynonymous SNV 0.053 2 25 hm5C_associated_SNPs_122576 0 0 0 0 2 ITGBL1 chr13:102250649 5'GT 102250649 Upstream 72bp
chr8 143603449 143603449 1 + C T PRAD 143603448 + 143603428 143603468 41 CACCTCCGGAACCGCCTCATCCGCAAGCGCTTCCTCTGCCT CACCTCCGGAACCGCCTCATCTGCAAGCGCTTCCTCTGCCT < 41bp 0.611798191089079 0.825882556466697 0.21540436 0.8460554 prediction 0.428168730755237 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143603448 chr8:143603449 nonsynonymous SNV 0.994 2 22 hm5C_associated_SNPs_122577 0 0 0 0 1 ADGRB1 chr8:143603476 5'GT 143603476 Upstream 28bp
chr15 41188276 41188276 1 + C A UCEC 41188275 + 41188255 41188295 41 CTGGGCAAGGATACACTGCTCCGGTAATCAAGAGCTCACAG CTGGGCAAGGATACACTGCTCAGGTAATCAAGAGCTCACAG < 41bp 0.436557666487946 0.714081609957235 0.18812943 0.7922149 prediction 0.428163219914469 Functional Gain - VPS18 ENSG00000104142 CDS Human protein_coding chr15:41188275 chr15:41188276 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_122578 0 0 1 0 1 VPS18 chr15:41188277 5'GT 41188277 Upstream 2bp
chr10 81904080 81904080 1 + C G rs116202800 81904079 + 81904059 81904099 41 GCCCCCGGGACCCTTCAGCCCCGCTCCCGACCTTCTCGGAG GCCCCCGGGACCCTTCAGCCCGGCTCCCGACCTTCTCGGAG < 41bp 0.403752821395834 0.714052015029167 0.25448507 0.6381413 prediction 0.428104030058334 Functional Gain - PLAC9 ENSG00000189129 CDS Human protein_coding chr10:81904079 chr10:81904080 synonymous SNV . 0 22 hm5C_associated_SNPs_122585 0 0 0 0 1 PLAC9 chr10:81904099 5'GT 81904099 Upstream 20bp
chr11 22759270 22759270 1 + A G COAD 22759267 + 22759247 22759287 41 TCAGTCCTCCACAAGCAACCCAGAGAAGTGTGTCTCTGTCT TCAGTCCTCCACAAGCAACCCAGGGAAGTGTGTCTCTGTCT < 41bp 0.581446879175448 0.795494527864956 0.38781708 0.80297005 prediction 0.428095297379016 Functional Gain - GAS2 ENSG00000148935 CDS Human protein_coding chr11:22759267 chr11:22759270 synonymous SNV . 0 24 hm5C_associated_SNPs_122589 0 0 1 3 2 GAS2 chr11:22759251 3'AG 22759251 Downstream 20bp
chr11 22759270 22759270 1 + A G COAD 22759267 + 22759247 22759287 41 TCAGTCCTCCACAAGCAACCCAGAGAAGTGTGTCTCTGTCT TCAGTCCTCCACAAGCAACCCAGGGAAGTGTGTCTCTGTCT < 41bp 0.581446879175448 0.795494527864956 0.38781708 0.80297005 prediction 0.428095297379016 Functional Gain - GAS2 ENSG00000148935 CDS Human protein_coding chr11:22759267 chr11:22759270 synonymous SNV . 0 24 hm5C_associated_SNPs_122589 0 0 1 3 2 GAS2 chr11:22759314 5'GT 22759314 Upstream 45bp
chr2 233320961 233320961 1 + C G SARC 233320960 + 233320940 233320980 41 GGCCTGAGGCTACAGCTCTCCCTGGGCGTCATCCCAGGTAA GGCCTGAGGCTACAGCTCTCCGTGGGCGTCATCCCAGGTAA < 41bp 0.395916173330661 0.714045642251632 0.7938938 0.9078961 prediction 0.428091284503263 Functional Gain - ALPI ENSG00000163295 CDS Human protein_coding chr2:233320960 chr2:233320961 nonsynonymous SNV 0.016 0 22 hm5C_associated_SNPs_122591 0 0 0 0 1 ALPI chr2:233320976 5'GT 233320976 Upstream 16bp
chr2 122522723 122522723 1 + T C PAAD 122522720 + 122522700 122522740 41 CCTGGTACAGTCGAGGCTGTCTGTCAACAGCGTGACTGCTG CCTGGTACAGTCGAGGCTGTCTGCCAACAGCGTGACTGCTG < 41bp 0.492625683068811 0.714045359222726 0.13925305 0.15265757 prediction 0.428090718445452 Functional Gain - TSN ENSG00000211460 CDS Human protein_coding chr2:122522720 chr2:122522723 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_122592 0 0 1 2 1 TSN chr2:122522710 3'AG 122522710 Downstream 14bp
chr21 43979141 43979141 1 + C A STAD 43979140 + 43979120 43979160 41 CGAACCACGTCGTCATTCTCCCCGGGGACGGTGGGAGTGGC CGAACCACGTCGTCATTCTCCACGGGGACGGTGGGAGTGGC < 41bp 0.630092872897279 0.844135544602359 0.855005 0.91305727 prediction 0.42808534341016 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43979140 chr21:43979141 nonsynonymous SNV 0.005 0 22 hm5C_associated_SNPs_122594 0 0 1 0 2 SLC37A1 chr21:43979068 3'AG 43979068 Downstream 74bp
chr21 43979141 43979141 1 + C A STAD 43979140 + 43979120 43979160 41 CGAACCACGTCGTCATTCTCCCCGGGGACGGTGGGAGTGGC CGAACCACGTCGTCATTCTCCACGGGGACGGTGGGAGTGGC < 41bp 0.630092872897279 0.844135544602359 0.855005 0.91305727 prediction 0.42808534341016 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43979140 chr21:43979141 nonsynonymous SNV 0.005 0 22 hm5C_associated_SNPs_122594 0 0 1 0 2 SLC37A1 chr21:43979199 5'GT 43979199 Upstream 59bp
chr7 99703083 99703083 1 + T C UCEC 99703080 + 99703060 99703100 41 TCTCTCAGCTGACTGTGATGCGGTACCAACTCTCCGATGAC TCTCTCAGCTGACTGTGATGCGGCACCAACTCTCCGATGAC < 41bp 0.508876696619078 0.722916444794695 0.249378 0.29815233 prediction 0.428079496351234 Functional Gain - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99703080 chr7:99703083 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_122596 0 0 0 0 2 AP4M1 chr7:99703068 3'AG 99703068 Downstream 16bp
chr7 99703083 99703083 1 + T C UCEC 99703080 + 99703060 99703100 41 TCTCTCAGCTGACTGTGATGCGGTACCAACTCTCCGATGAC TCTCTCAGCTGACTGTGATGCGGCACCAACTCTCCGATGAC < 41bp 0.508876696619078 0.722916444794695 0.249378 0.29815233 prediction 0.428079496351234 Functional Gain - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99703080 chr7:99703083 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_122596 0 0 0 0 2 AP4M1 chr7:99703162 5'GT 99703162 Upstream 80bp
chr18 54629743 54629743 1 + C T CESC 54629742 + 54629722 54629762 41 TCAGTGGCCCTGTACGACATCCGGACTGGAAAATGTCAGGT TCAGTGGCCCTGTACGACATCTGGACTGGAAAATGTCAGGT < 41bp 0.465798980507205 0.714033607305876 0.1376389 0.094876766 prediction 0.428067214611752 Functional Gain - WDR7 ENSG00000091157 CDS Human protein_coding chr18:54629742 chr18:54629743 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_122597 0 0 0 0 2 WDR7 chr18:54629661 3'AG 54629661 Downstream 83bp
chr18 54629743 54629743 1 + C T CESC 54629742 + 54629722 54629762 41 TCAGTGGCCCTGTACGACATCCGGACTGGAAAATGTCAGGT TCAGTGGCCCTGTACGACATCTGGACTGGAAAATGTCAGGT < 41bp 0.465798980507205 0.714033607305876 0.1376389 0.094876766 prediction 0.428067214611752 Functional Gain - WDR7 ENSG00000091157 CDS Human protein_coding chr18:54629742 chr18:54629743 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_122597 0 0 0 0 2 WDR7 chr18:54629760 5'GT 54629760 Upstream 18bp
chr10 90429689 90429689 1 + A G GBM 90429686 + 90429666 90429706 41 GCTACACTATGTTGGCCATTCCCAGGGCACCACCATTGGTA GCTACACTATGTTGGCCATTCCCGGGGCACCACCATTGGTA < 41bp 0.467742385281992 0.714029542948654 0.09478852 0.82355094 prediction 0.428059085897307 Functional Gain - LIPF ENSG00000182333 CDS Human protein_coding chr10:90429686 chr10:90429689 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_122599 0 0 0 0 2 LIPF chr10:90429594 3'AG 90429594 Downstream 96bp
chr10 90429689 90429689 1 + A G GBM 90429686 + 90429666 90429706 41 GCTACACTATGTTGGCCATTCCCAGGGCACCACCATTGGTA GCTACACTATGTTGGCCATTCCCGGGGCACCACCATTGGTA < 41bp 0.467742385281992 0.714029542948654 0.09478852 0.82355094 prediction 0.428059085897307 Functional Gain - LIPF ENSG00000182333 CDS Human protein_coding chr10:90429686 chr10:90429689 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_122599 0 0 0 0 2 LIPF chr10:90429703 5'GT 90429703 Upstream 15bp
chr2 120020658 120020658 1 + T C BRCA 120020656 + 120020636 120020676 41 TCACTGGGCTTTGTGGCCCTCGTGCTGAGCACACTGCACAC TCACTGGGCTTTGTGGCCCTCGCGCTGAGCACACTGCACAC < 41bp 0.455674016449282 0.714017943669985 0.64015317 0.78932047 prediction 0.428035887339971 Functional Gain - STEAP3 ENSG00000115107 CDS Human protein_coding chr2:120020656 chr2:120020658 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_122601 0 0 1 0 1 STEAP3 chr2:120020633 3'AG 120020633 Downstream 26bp
chr12 109536366 109536366 1 + C T rs151095402 109536365 + 109536345 109536385 41 GCCCTGCTCAGACTCGCGGCCCGCAACGTGCCCGTGGGCTT GCCCTGCTCAGACTCGCGGCCTGCAACGTGCCCGTGGGCTT < 41bp 0.603456623754411 0.817470621675745 0.02520001 0.019279033 prediction 0.428027995842668 Functional Gain - UNG ENSG00000076248 CDS Human protein_coding chr12:109536365 chr12:109536366 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_122602 0 0 1 0 1 UNG chr12:109536443 5'GT 109536443 Upstream 78bp
chr17 72758247 72758247 1 + C T OV 72758246 + 72758226 72758266 41 TCCAAGCCAGGCCAGTTCATCCGGTCAGTGGACCCAGACTC TCCAAGCCAGGCCAGTTCATCTGGTCAGTGGACCCAGACTC < 41bp 0.598556374128349 0.812564794848507 0.3967426 0.35118848 prediction 0.428016841440316 Functional Gain - SLC9A3R1 ENSG00000109062 CDS Human protein_coding chr17:72758246 chr17:72758247 nonsynonymous SNV 0.949 4 22 hm5C_associated_SNPs_122604 0 0 0 0 2 SLC9A3R1 chr17:72758151 3'AG 72758151 Downstream 97bp
chr17 72758247 72758247 1 + C T OV 72758246 + 72758226 72758266 41 TCCAAGCCAGGCCAGTTCATCCGGTCAGTGGACCCAGACTC TCCAAGCCAGGCCAGTTCATCTGGTCAGTGGACCCAGACTC < 41bp 0.598556374128349 0.812564794848507 0.3967426 0.35118848 prediction 0.428016841440316 Functional Gain - SLC9A3R1 ENSG00000109062 CDS Human protein_coding chr17:72758246 chr17:72758247 nonsynonymous SNV 0.949 4 22 hm5C_associated_SNPs_122604 0 0 0 0 2 SLC9A3R1 chr17:72758312 5'GT 72758312 Upstream 66bp
chr1 201286876 201286876 1 + C T COAD 201286875 + 201286855 201286895 41 AGTCAGCCTCCTGAGGAGAACCGGGAACGCCGAGATCCAGA AGTCAGCCTCCTGAGGAGAACTGGGAACGCCGAGATCCAGA < 41bp 0.589314168885486 0.803321804104803 0.89223385 0.86440474 prediction 0.428015270438634 Functional Gain - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201286875 chr1:201286876 synonymous SNV . 0 22 hm5C_associated_SNPs_122605 0 0 0 0 1 PKP1 chr1:201286907 5'GT 201286907 Upstream 32bp
chr11 125267785 125267785 1 + C T SKCM 125267784 + 125267764 125267804 41 CCACAGATGGTGAAGGCAATCCAGGTCCTGAGAATCCACCT CCACAGATGGTGAAGGCAATCTAGGTCCTGAGAATCCACCT < 41bp 0.584531441259528 0.798535736187243 0.5316109 0.4179861 prediction 0.428008589855429 Functional Gain - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125267784 chr11:125267785 stopgain 1.000 1 22 hm5C_associated_SNPs_122606 0 0 1 0 1 PKNOX2 chr11:125267770 3'AG 125267770 Downstream 16bp
chr14 24108419 24108419 1 + C T PAAD 24108418 + 24108398 24108438 41 GCCATCGCCCGACGTCTGGCCCGGGACGGGGCCCACGTGGT GCCATCGCCCGACGTCTGGCCTGGGACGGGGCCCACGTGGT < 41bp 0.561226212707419 0.775223640151129 0.5239075 0.4277526 prediction 0.427994854887421 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24108418 chr14:24108419 nonsynonymous SNV 0.025 2 22 hm5C_associated_SNPs_122607 0 0 1 0 1 DHRS2 chr14:24108388 3'AG 24108388 Downstream 32bp
chr13 96086220 96086220 1 + C T SKCM 96086219 + 96086199 96086239 41 ATAACAGCCACTTGGGTTTACCAGGGTCTGTGGATGAACTG ATAACAGCCACTTGGGTTTACTAGGGTCTGTGGATGAACTG < 41bp 0.537777637107448 0.751771884109554 0.9111366 0.8552021 prediction 0.427988494004211 Functional Gain - CLDN10 ENSG00000134873 CDS Human protein_coding chr13:96086219 chr13:96086220 stopgain 1.000 0 22 hm5C_associated_SNPs_122611 0 0 0 0 2 CLDN10 chr13:96086244 5'GT 96086244 Upstream 25bp
chr13 96086220 96086220 1 + C T SKCM 96086219 + 96086199 96086239 41 ATAACAGCCACTTGGGTTTACCAGGGTCTGTGGATGAACTG ATAACAGCCACTTGGGTTTACTAGGGTCTGTGGATGAACTG < 41bp 0.537777637107448 0.751771884109554 0.9111366 0.8552021 prediction 0.427988494004211 Functional Gain - CLDN10 ENSG00000134873 CDS Human protein_coding chr13:96086219 chr13:96086220 stopgain 1.000 0 22 hm5C_associated_SNPs_122611 0 0 0 0 2 CLDN10 chr13:96086301 5'GT 96086301 Upstream 82bp
chr9 100076998 100076998 1 + C T SKCM 100076997 + 100076977 100077017 41 CCTGCACTCGCTGGAGTTCTCCCGAACCGATAAAGTAAGTC CCTGCACTCGCTGGAGTTCTCTCGAACCGATAAAGTAAGTC < 41bp 0.604141988466659 0.818134684160205 0.315382 0.90566516 prediction 0.427985391387092 Functional Gain - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100076997 chr9:100076998 synonymous SNV . 0 22 hm5C_associated_SNPs_122612 0 0 0 0 2 CCDC180 chr9:100076900 3'AG 100076900 Downstream 99bp
chr9 100076998 100076998 1 + C T SKCM 100076997 + 100076977 100077017 41 CCTGCACTCGCTGGAGTTCTCCCGAACCGATAAAGTAAGTC CCTGCACTCGCTGGAGTTCTCTCGAACCGATAAAGTAAGTC < 41bp 0.604141988466659 0.818134684160205 0.315382 0.90566516 prediction 0.427985391387092 Functional Gain - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100076997 chr9:100076998 synonymous SNV . 0 22 hm5C_associated_SNPs_122612 0 0 0 0 2 CCDC180 chr9:100077010 5'GT 100077010 Upstream 13bp
chr18 61449733 61449733 1 + C T STAD 61449732 + 61449712 61449752 41 TTCGCTGCCCTGGCCCTGGTCCGCTTGGGCGCTCAAGATGA TTCGCTGCCCTGGCCCTGGTCTGCTTGGGCGCTCAAGATGA < 41bp 0.453980612716424 0.713986964562033 0.16817263 0.20951042 prediction 0.427973929124066 Functional Gain - SERPINB7 ENSG00000166396 CDS Human protein_coding chr18:61449732 chr18:61449733 nonsynonymous SNV 0.492 4 22 hm5C_associated_SNPs_122616 0 0 0 0 1 SERPINB7 chr18:61449774 5'GT 61449774 Upstream 42bp
chr7 116771972 116771972 1 + A G UCEC 116771969 + 116771949 116771989 41 AGCCTGGAGAGAGAGAAACCCCCAAGCTAGGATTTCTGCAG AGCCTGGAGAGAGAGAAACCCCCGAGCTAGGATTTCTGCAG < 41bp 0.555146564182046 0.769132898525017 0.8231436 0.7845937 prediction 0.427972668685942 Functional Gain - ST7 ENSG00000004866 CDS Human protein_coding chr7:116771969 chr7:116771972 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_122617 0 0 1 0 2 ST7 chr7:116771939 3'AG 116771939 Downstream 34bp
chr7 116771972 116771972 1 + A G UCEC 116771969 + 116771949 116771989 41 AGCCTGGAGAGAGAGAAACCCCCAAGCTAGGATTTCTGCAG AGCCTGGAGAGAGAGAAACCCCCGAGCTAGGATTTCTGCAG < 41bp 0.555146564182046 0.769132898525017 0.8231436 0.7845937 prediction 0.427972668685942 Functional Gain - ST7 ENSG00000004866 CDS Human protein_coding chr7:116771969 chr7:116771972 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_122617 0 0 1 0 2 ST7 chr7:116772014 5'GT 116772014 Upstream 43bp
chr10 89102839 89102839 1 + C G rs60255624 89102836 + 89102816 89102856 41 TCGCCTCGCCTGACCGGCCGCAGCCTTGGATACCAGCCTTA TCGCCTCGCCTGACCGGCCGCAGGCTTGGATACCAGCCTTA < 41bp 0.497110736624605 0.713985744186097 0.20619863 0.7007424 prediction 0.427971488372194 Functional Gain - LINC00863 ENSG00000224914 ncRNA_exonic Human lincRNA chr10:89102836 chr10:89102839 . . 0 24 hm5C_associated_SNPs_122620 0 0 0 0 1 LINC00863 chr10:89102894 5'GT 89102894 Upstream 56bp
chr21 15954611 15954611 1 + A G rs183385144 15954608 + 15954588 15954628 41 GAAAAGGCTTCCAGTGATGCCACATGTAAGCTTCACCTTCA GAAAAGGCTTCCAGTGATGCCACGTGTAAGCTTCACCTTCA < 41bp 0.546320730977191 0.760305746669835 0.5747433 0.28984612 prediction 0.427970031385288 Functional Gain - SAMSN1 ENSG00000155307 CDS Human protein_coding chr21:15954608 chr21:15954611 nonsynonymous SNV 0.007 1 24 hm5C_associated_SNPs_122621 0 0 0 0 1 SAMSN1 chr21:15954612 5'GT 15954612 Upstream 2bp
chr1 65871640 65871640 1 + C T SKCM 65871639 + 65871619 65871659 41 GCTCGCCACAGAAGGCGTCTCCCCAGCCTATGGGTGGCGGG GCTCGCCACAGAAGGCGTCTCTCCAGCCTATGGGTGGCGGG < 41bp 0.637797894127786 0.851766019078482 0.20163667 0.9298447 prediction 0.427936249901391 Functional Gain - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65871639 chr1:65871640 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_122625 0 0 0 0 1 DNAJC6 chr1:65871553 3'AG 65871553 Downstream 88bp
chr6 70916872 70916872 1 + C T COAD 70916871 + 70916851 70916891 41 CTCTGGGTTTGCCAGGCTCACCAGGTGCCCCAGGCCCACAG CTCTGGGTTTGCCAGGCTCACTAGGTGCCCCAGGCCCACAG < 41bp 0.484285733910795 0.713960722321792 0.9043659 0.8466778 prediction 0.427921444643585 Functional Gain - COL19A1 ENSG00000082293 CDS Human protein_coding chr6:70916871 chr6:70916872 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_122627 0 0 0 0 1 COL19A1 chr6:70916851 3'AG 70916851 Downstream 22bp
chrX 99920260 99920260 1 + C T CESC 99920259 + 99920239 99920279 41 GACATAGATCCCCCCAAGATCCGCTGTCCCCACTCACGTGA GACATAGATCCCCCCAAGATCTGCTGTCCCCACTCACGTGA < 41bp 0.456835595532167 0.713958155891152 0.18973753 0.11033979 prediction 0.427916311782305 Functional Gain - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99920259 chrX:99920260 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_122629 0 0 0 0 1 SRPX2 chrX:99920240 3'AG 99920240 Downstream 21bp
chr10 121184524 121184524 1 + A G UCEC 121184521 + 121184501 121184541 41 CTAGGTCTGTCCACGAGTACCTGAGGGGAGAACCATTCCAC CTAGGTCTGTCCACGAGTACCTGGGGGGAGAACCATTCCAC < 41bp 0.590621606251772 0.80456794806363 0.20188117 0.6410837 prediction 0.427892683623716 Functional Gain - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121184521 chr10:121184524 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_122633 0 0 1 0 2 GRK5 chr10:121184505 3'AG 121184505 Downstream 20bp
chr10 121184524 121184524 1 + A G UCEC 121184521 + 121184501 121184541 41 CTAGGTCTGTCCACGAGTACCTGAGGGGAGAACCATTCCAC CTAGGTCTGTCCACGAGTACCTGGGGGGAGAACCATTCCAC < 41bp 0.590621606251772 0.80456794806363 0.20188117 0.6410837 prediction 0.427892683623716 Functional Gain - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121184521 chr10:121184524 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_122633 0 0 1 0 2 GRK5 chr10:121184597 5'GT 121184597 Upstream 74bp
chr1 76254929 76254929 1 + T C LUAD 76254927 + 76254907 76254947 41 CTCATGGGACAACTTCATCGCATGAATAGAGAAGAGATTCT CTCATGGGACAACTTCATCGCACGAATAGAGAAGAGATTCT < 41bp 0.624978190359418 0.838922249486606 0.064582944 0.02443266 prediction 0.427888118254376 Functional Gain - RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76254927 chr1:76254929 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_122637 0 0 1 1 1 RABGGTB chr1:76254844 3'AG 76254844 Downstream 86bp
chr2 70162534 70162534 1 + T G rs2228183 70162532 + 70162512 70162552 41 AGTTGAAGGGGCTGGTGCCACTTGGACCCGAATCAAGTCGA AGTTGAAGGGGCTGGTGCCACTGGGACCCGAATCAAGTCGA < 41bp 0.69506995610553 0.909013200208098 0.28878075 0.5187395 prediction 0.427886488205138 Functional Gain - MXD1 ENSG00000059728 CDS Human protein_coding chr2:70162532 chr2:70162534 synonymous SNV . 0 23 hm5C_associated_SNPs_122640 0 0 0 0 2 MXD1 chr2:70162483 3'AG 70162483 Downstream 52bp
chr2 70162534 70162534 1 + T G rs2228183 70162532 + 70162512 70162552 41 AGTTGAAGGGGCTGGTGCCACTTGGACCCGAATCAAGTCGA AGTTGAAGGGGCTGGTGCCACTGGGACCCGAATCAAGTCGA < 41bp 0.69506995610553 0.909013200208098 0.28878075 0.5187395 prediction 0.427886488205138 Functional Gain - MXD1 ENSG00000059728 CDS Human protein_coding chr2:70162532 chr2:70162534 synonymous SNV . 0 23 hm5C_associated_SNPs_122640 0 0 0 0 2 MXD1 chr2:70162597 5'GT 70162597 Upstream 64bp
chr7 127724856 127724856 1 + C A GBM 127724855 + 127724835 127724875 41 GTAGAGGGCTCCTATGCCCCCCGCAGGGGAGAGTTCTGCAT GTAGAGGGCTCCTATGCCCCCAGCAGGGGAGAGTTCTGCAT < 41bp 0.589930554948559 0.803873225586896 0.09116796 0.37432107 prediction 0.427885341276673 Functional Gain - SND1 ENSG00000197157 CDS Human protein_coding chr7:127724855 chr7:127724856 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_122641 0 0 1 0 2 SND1 chr7:127724776 3'AG 127724776 Downstream 81bp
chr7 127724856 127724856 1 + C A GBM 127724855 + 127724835 127724875 41 GTAGAGGGCTCCTATGCCCCCCGCAGGGGAGAGTTCTGCAT GTAGAGGGCTCCTATGCCCCCAGCAGGGGAGAGTTCTGCAT < 41bp 0.589930554948559 0.803873225586896 0.09116796 0.37432107 prediction 0.427885341276673 Functional Gain - SND1 ENSG00000197157 CDS Human protein_coding chr7:127724855 chr7:127724856 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_122641 0 0 1 0 2 SND1 chr7:127724899 5'GT 127724899 Upstream 44bp
chr3 41275668 41275668 1 + C A THCA 41275667 + 41275647 41275687 41 TCGAAATCTTGCCCTTTGTCCCGCAAATCATGCACCTTTGC TCGAAATCTTGCCCTTTGTCCAGCAAATCATGCACCTTTGC < 41bp 0.459257005307881 0.713941903305094 0.0518336 0.1824167 prediction 0.427883806610188 Functional Gain - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41275667 chr3:41275668 synonymous SNV . 0 22 hm5C_associated_SNPs_122643 0 0 1 2 1 CTNNB1 chr3:41275630 3'AG 41275630 Downstream 39bp
chr1 46738151 46738151 1 + A G LUSC 46738148 + 46738128 46738168 41 TTTTCTCTAGATGCCTGATACGGAGGACTTCTGATATCCTT TTTTCTCTAGATGCCTGATACGGGGGACTTCTGATATCCTT < 41bp 0.572714268373302 0.786655934953835 0.44710726 0.92096466 prediction 0.427883333161065 Functional Gain - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46738148 chr1:46738151 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_122644 0 0 1 0 2 RAD54L chr1:46738138 3'AG 46738138 Downstream 14bp
chr1 46738151 46738151 1 + A G LUSC 46738148 + 46738128 46738168 41 TTTTCTCTAGATGCCTGATACGGAGGACTTCTGATATCCTT TTTTCTCTAGATGCCTGATACGGGGGACTTCTGATATCCTT < 41bp 0.572714268373302 0.786655934953835 0.44710726 0.92096466 prediction 0.427883333161065 Functional Gain - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46738148 chr1:46738151 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_122644 0 0 1 0 2 RAD54L chr1:46738212 5'GT 46738212 Upstream 62bp
chr11 110237184 110237184 1 + C A rs376237153 110237180 + 110237160 110237200 41 AAGTGTAGCACTGTGGTGACCTGGCGGGATCTGCTCTCCAG AAGTGTAGCACTGTGGTGACCTGGAGGGATCTGCTCTCCAG < 41bp 0.698703960505386 0.912640379030905 0.23161983 0.6136141 prediction 0.427872837051037 Functional Gain - LOC105369486 ENSG00000254416 ncRNA_exonic Human lincRNA chr11:110237180 chr11:110237184 . . 0 25 hm5C_associated_SNPs_122650 0 0 0 0 2 LOC105369486 chr11:110237086 3'AG 110237086 Downstream 99bp
chr11 110237184 110237184 1 + C A rs376237153 110237180 + 110237160 110237200 41 AAGTGTAGCACTGTGGTGACCTGGCGGGATCTGCTCTCCAG AAGTGTAGCACTGTGGTGACCTGGAGGGATCTGCTCTCCAG < 41bp 0.698703960505386 0.912640379030905 0.23161983 0.6136141 prediction 0.427872837051037 Functional Gain - LOC105369486 ENSG00000254416 ncRNA_exonic Human lincRNA chr11:110237180 chr11:110237184 . . 0 25 hm5C_associated_SNPs_122650 0 0 0 0 2 LOC105369486 chr11:110237259 5'GT 110237259 Upstream 76bp
chr1 70144107 70144107 1 + A G COAD 70144104 + 70144084 70144124 41 GAAGGAATCCCCCGCAATACCAGAGAAGTCCTTGTAAAGAG GAAGGAATCCCCCGCAATACCAGGGAAGTCCTTGTAAAGAG < 41bp 0.543495421738353 0.757429514075763 0.77023166 0.90587616 prediction 0.42786818467482 Functional Gain - LRRC7 ENSG00000033122 CDS Human protein_coding chr1:70144104 chr1:70144107 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_122651 0 0 0 0 1 LRRC7 chr1:70144064 3'AG 70144064 Downstream 44bp
chr12 112926909 112926909 1 + A G GBM 112926906 + 112926886 112926926 41 AGGGATGGTCCAGACAGAAGCACAGTACCGATTTATCTATA AGGGATGGTCCAGACAGAAGCACGGTACCGATTTATCTATA < 41bp 0.474771558009929 0.713934025111706 0.19269651 0.47709537 prediction 0.427868050223411 Functional Gain - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926906 chr12:112926909 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_122652 2 0 1 0 2 PTPN11 chr12:112926828 3'AG 112926828 Downstream 82bp
chr12 112926909 112926909 1 + A G GBM 112926906 + 112926886 112926926 41 AGGGATGGTCCAGACAGAAGCACAGTACCGATTTATCTATA AGGGATGGTCCAGACAGAAGCACGGTACCGATTTATCTATA < 41bp 0.474771558009929 0.713934025111706 0.19269651 0.47709537 prediction 0.427868050223411 Functional Gain - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926906 chr12:112926909 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_122652 2 0 1 0 2 PTPN11 chr12:112926979 5'GT 112926979 Upstream 71bp
chrX 140984733 140984733 1 + C A LUAD 140984732 + 140984712 140984752 41 AGTCCTCCTGAGATTCCTCCCCAGGGTCCTCCCAAGATCTC AGTCCTCCTGAGATTCCTCCCAAGGGTCCTCCCAAGATCTC < 41bp 0.626578464100622 0.840511602621823 0.4844118 0.4910294 prediction 0.427866277042402 Functional Gain - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140984732 chrX:140984733 nonsynonymous SNV 0.020 0 22 hm5C_associated_SNPs_122653 0 0 0 0 1 MAGEC3 chrX:140984668 3'AG 140984668 Downstream 66bp
chr1 909406 909406 1 + C T COAD 909405 + 909385 909425 41 GCTCAGCCAAGGATGGGGGGCCGCAGCCCCCAGACGCCCCT GCTCAGCCAAGGATGGGGGGCTGCAGCCCCCAGACGCCCCT < 41bp 0.564811496889563 0.778743503795167 0.39525092 0.37616968 prediction 0.427864013811207 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:909405 chr1:909406 nonsynonymous SNV 0.000 3 22 hm5C_associated_SNPs_122654 0 0 0 0 1 PLEKHN1 chr1:909431 5'GT 909431 Upstream 26bp
chr5 75597366 75597366 1 + C T UCEC 75597365 + 75597345 75597385 41 GTGGAACTGTACCCCACAGACCGGAGGTATGTTGAAATGGG GTGGAACTGTACCCCACAGACTGGAGGTATGTTGAAATGGG < 41bp 0.593576855807857 0.807502050092527 0.4951743 0.3775234 prediction 0.42785038856934 Functional Gain - SV2C ENSG00000122012 CDS Human protein_coding chr5:75597365 chr5:75597366 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_122659 0 0 0 0 1 SV2C chr5:75597370 5'GT 75597370 Upstream 5bp
chr5 139743362 139743362 1 + C G LUAD 139743361 + 139743341 139743381 41 CGCAGGAAGGTCCCGTGGTACCCCAGCGATTTCTTGGACGC CGCAGGAAGGTCCCGTGGTACGCCAGCGATTTCTTGGACGC < 41bp 0.680531144909956 0.894453728830178 0.24067959 0.36555415 prediction 0.427845167840444 Functional Gain - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139743361 chr5:139743362 nonsynonymous SNV 0.974 0 22 hm5C_associated_SNPs_122660 0 0 0 0 2 SLC4A9 chr5:139743313 3'AG 139743313 Downstream 50bp
chr5 139743362 139743362 1 + C G LUAD 139743361 + 139743341 139743381 41 CGCAGGAAGGTCCCGTGGTACCCCAGCGATTTCTTGGACGC CGCAGGAAGGTCCCGTGGTACGCCAGCGATTTCTTGGACGC < 41bp 0.680531144909956 0.894453728830178 0.24067959 0.36555415 prediction 0.427845167840444 Functional Gain - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139743361 chr5:139743362 nonsynonymous SNV 0.974 0 22 hm5C_associated_SNPs_122660 0 0 0 0 2 SLC4A9 chr5:139743346 3'AG 139743346 Downstream 17bp
chr14 93119407 93119407 1 + C T rs3818321 93119406 + 93119386 93119426 41 GGTGGACCCCGCCCTGCACTCCGAGGAGGAGCTCGGTCAGT GGTGGACCCCGCCCTGCACTCTGAGGAGGAGCTCGGTCAGT < 41bp 0.563784727200033 0.777707270065664 0.90555745 0.6337242 prediction 0.427845085731262 Functional Gain - RIN3 ENSG00000100599 CDS Human protein_coding chr14:93119406 chr14:93119407 synonymous SNV . 0 22 hm5C_associated_SNPs_122661 0 0 0 0 1 RIN3 chr14:93119420 5'GT 93119420 Upstream 14bp
chr8 144351631 144351631 1 + C T COAD 144351630 + 144351610 144351650 41 CCCCTGTCAGTCTCTCATCACCAGGGACACCTGGAACCCAG CCCCTGTCAGTCTCTCATCACTAGGGACACCTGGAACCCAG < 41bp 0.483398597547868 0.713914181455679 0.9482777 0.7612691 prediction 0.427828362911359 Functional Gain - GLI4 ENSG00000250571 CDS Human protein_coding chr8:144351630 chr8:144351631 nonsynonymous SNV 0.105 1 22 hm5C_associated_SNPs_122665 0 0 1 0 1 GLI4 chr8:144351690 5'GT 144351690 Upstream 60bp
chr5 76717663 76717663 1 + T G ACC 76717660 + 76717640 76717680 41 TTCCAGATTGAAGGCAGCGACTGTGAATGCAACCCTGCTGG TTCCAGATTGAAGGCAGCGACTGGGAATGCAACCCTGCTGG < 41bp 0.324653297651759 0.713909682516126 0.0768325 0.47983766 prediction 0.427819365032253 Functional Gain - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76717660 chr5:76717663 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_122670 0 0 0 0 1 PDE8B chr5:76717646 3'AG 76717646 Downstream 18bp
chr21 43531635 43531635 1 + T C UCS 43531633 + 43531613 43531653 41 CAGCTACAGGGAAACTCCATCATGGAGCCACCCTCCTGGCC CAGCTACAGGGAAACTCCATCACGGAGCCACCCTCCTGGCC < 41bp 0.580070076301282 0.793971936423373 0.9502946 0.95934904 prediction 0.427803720244184 Functional Gain - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43531633 chr21:43531635 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_122672 0 0 0 0 1 UMODL1 chr21:43531616 3'AG 43531616 Downstream 20bp
chr12 100904574 100904574 1 + T A OV 100904570 + 100904550 100904590 41 GTTCAGGTGTTTTAACAGAACAAGTGGCAGGTCCTCTGGGA GTTCAGGTGTTTTAACAGAACAAGAGGCAGGTCCTCTGGGA < 41bp 0.665363820539452 0.87926032135459 0.31624842 0.5752735 prediction 0.427793001630275 Functional Gain - NR1H4 ENSG00000012504 CDS Human protein_coding chr12:100904570 chr12:100904574 nonsynonymous SNV 0.948 1 25 hm5C_associated_SNPs_122673 0 0 1 0 1 NR1H4 chr12:100904556 3'AG 100904556 Downstream 19bp
chr3 44945414 44945414 1 + C A LUSC 44945413 + 44945393 44945433 41 CGGATGCCTGGATGAAGCGACCGGATCTGCCCAAGGGCTAC CGGATGCCTGGATGAAGCGACAGGATCTGCCCAAGGGCTAC < 41bp 0.617100578542683 0.830992847579125 0.38707823 0.27643692 prediction 0.427784538072882 Functional Gain - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44945413 chr3:44945414 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_122677 0 0 0 0 1 TGM4 chr3:44945376 3'AG 44945376 Downstream 39bp
chrX 152227030 152227030 1 + C T rs782265481 152227029 + 152227009 152227049 41 TGGGGGTCAGGTCCAGGTCCCCGAAGAGGTGCTGGAGAGGA TGGGGGTCAGGTCCAGGTCCCTGAAGAGGTGCTGGAGAGGA < 41bp 0.523793505847463 0.737685716885983 0.45306572 0.4367634 prediction 0.427784422077041 Functional Gain - PNMA3 ENSG00000183837 UTR3 Human protein_coding chrX:152227029 chrX:152227030 . . 0 22 hm5C_associated_SNPs_122678 0 0 0 0 1 PNMA3 chrX:152227128 5'GT 152227128 Upstream 99bp
chr15 41105991 41105991 1 + C T SARC 41105990 + 41105970 41106010 41 TTCTCGACCCTGGACGCAACCCCGCGGGGCAGAGCCTGAGG TTCTCGACCCTGGACGCAACCTCGCGGGGCAGAGCCTGAGG < 41bp 0.455322257329498 0.713892074621767 0.124655366 0.10850373 prediction 0.427784149243534 Functional Gain - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105990 chr15:41105991 synonymous SNV . 0 22 hm5C_associated_SNPs_122679 0 0 1 0 2 ZFYVE19 chr15:41105911 3'AG 41105911 Downstream 81bp
chr15 41105991 41105991 1 + C T SARC 41105990 + 41105970 41106010 41 TTCTCGACCCTGGACGCAACCCCGCGGGGCAGAGCCTGAGG TTCTCGACCCTGGACGCAACCTCGCGGGGCAGAGCCTGAGG < 41bp 0.455322257329498 0.713892074621767 0.124655366 0.10850373 prediction 0.427784149243534 Functional Gain - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105990 chr15:41105991 synonymous SNV . 0 22 hm5C_associated_SNPs_122679 0 0 1 0 2 ZFYVE19 chr15:41106009 5'GT 41106009 Upstream 19bp
chr19 50962182 50962182 1 + C T SKCM 50962181 + 50962161 50962201 41 GTTTGCGCCCTCAGAGCCACCCAAGATCCGGCTTCCCCGCC GTTTGCGCCCTCAGAGCCACCTAAGATCCGGCTTCCCCGCC < 41bp 0.473006128569648 0.713890832602674 0.12031993 0.085573256 prediction 0.427781665205348 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50962181 chr19:50962182 synonymous SNV . 0 22 hm5C_associated_SNPs_122680 0 0 0 0 2 MYBPC2 chr19:50962175 3'AG 50962175 Downstream 8bp
chr19 50962182 50962182 1 + C T SKCM 50962181 + 50962161 50962201 41 GTTTGCGCCCTCAGAGCCACCCAAGATCCGGCTTCCCCGCC GTTTGCGCCCTCAGAGCCACCTAAGATCCGGCTTCCCCGCC < 41bp 0.473006128569648 0.713890832602674 0.12031993 0.085573256 prediction 0.427781665205348 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50962181 chr19:50962182 synonymous SNV . 0 22 hm5C_associated_SNPs_122680 0 0 0 0 2 MYBPC2 chr19:50962263 5'GT 50962263 Upstream 82bp
chr19 42828940 42828940 1 + C T SKCM 42828939 + 42828919 42828959 41 CTCCCGCTGTTCCGTGACCTCCGGCCCCCTGGCCCCCTTCG CTCCCGCTGTTCCGTGACCTCTGGCCCCCTGGCCCCCTTCG < 41bp 0.552165484059926 0.766046498019069 0.74934155 0.16458651 prediction 0.427762027918285 Functional Gain - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42828939 chr19:42828940 nonsynonymous SNV 0.992 2 22 hm5C_associated_SNPs_122682 0 0 1 0 1 TMEM145 chr19:42828889 3'AG 42828889 Downstream 52bp
chr14 39646669 39646669 1 + A G UCEC 39646666 + 39646646 39646686 41 ATCACGCCAGGAAAGCGACCCGGAGGATGATGATGTTAAAA ATCACGCCAGGAAAGCGACCCGGGGGATGATGATGTTAAAA < 41bp 0.576857955015898 0.79073004201131 0.7554488 0.8998497 prediction 0.427744173990825 Functional Gain - PNN ENSG00000100941 CDS Human protein_coding chr14:39646666 chr14:39646669 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_122684 0 0 1 0 2 PNN chr14:39646616 3'AG 39646616 Downstream 54bp
chr14 39646669 39646669 1 + A G UCEC 39646666 + 39646646 39646686 41 ATCACGCCAGGAAAGCGACCCGGAGGATGATGATGTTAAAA ATCACGCCAGGAAAGCGACCCGGGGGATGATGATGTTAAAA < 41bp 0.576857955015898 0.79073004201131 0.7554488 0.8998497 prediction 0.427744173990825 Functional Gain - PNN ENSG00000100941 CDS Human protein_coding chr14:39646666 chr14:39646669 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_122684 0 0 1 0 2 PNN chr14:39646688 5'GT 39646688 Upstream 20bp
chr5 125707187 125707187 1 + C T rs139792816 125707186 + 125707166 125707206 41 CGGTGTTCCGGTTTGAGACTCCGGGCAGCCCAAGGAAGGCC CGGTGTTCCGGTTTGAGACTCTGGGCAGCCCAAGGAAGGCC < 41bp 0.503428055468528 0.717292157919113 0.66067994 0.78108525 prediction 0.427728204901171 Functional Gain - GRAMD2B ENSG00000155324 CDS Human protein_coding chr5:125707186 chr5:125707187 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_122689 0 0 0 0 1 GRAMD2B chr5:125707259 5'GT 125707259 Upstream 73bp
chr1 47280902 47280902 1 + C T STAD 47280901 + 47280881 47280921 41 CATCGTTGTAGAGAGGAGGTCCGCGAGATCCTAGGGGACCA CATCGTTGTAGAGAGGAGGTCTGCGAGATCCTAGGGGACCA < 41bp 0.467294900235027 0.7138636925478 0.40919626 0.4967072 prediction 0.427727385095599 Functional Gain - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47280901 chr1:47280902 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_122690 0 0 0 0 1 CYP4B1 chr1:47280936 5'GT 47280936 Upstream 35bp
chr12 18435657 18435657 1 + C T UCEC 18435656 + 18435636 18435676 41 TTTGAAAGGCTCTCTTCAACCCGGAATGTGGGAAAGTACAT TTTGAAAGGCTCTCTTCAACCTGGAATGTGGGAAAGTACAT < 41bp 0.502116512998655 0.715978512191276 0.30625227 0.20655435 prediction 0.427723998385242 Functional Gain - PIK3C2G ENSG00000139144 CDS Human protein_coding chr12:18435656 chr12:18435657 synonymous SNV . 0 22 hm5C_associated_SNPs_122692 0 0 0 0 1 PIK3C2G chr12:18435693 5'GT 18435693 Upstream 37bp
chr1 167088604 167088604 1 + T C PAAD 167088601 + 167088581 167088621 41 TCTACACTGGCCTGGAGATCCAGTACCTGGGTGTAGAGGTG TCTACACTGGCCTGGAGATCCAGCACCTGGGTGTAGAGGTG < 41bp 0.490437299355394 0.713861840059415 0.09325227 0.10297492 prediction 0.427723680118829 Functional Gain - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167088601 chr1:167088604 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_122693 0 0 0 0 1 DUSP27 chr1:167088703 5'GT 167088703 Upstream 100bp
chr21 45553645 45553645 1 + C G rs150960051 45553644 + 45553624 45553664 41 ATCTGCATTCACGTCCCTGTCCCCCGGCGGTCGGACGCCTT ATCTGCATTCACGTCCCTGTCGCCCGGCGGTCGGACGCCTT < 41bp 0.402356357441596 0.713861261711923 0.15887767 0.21079436 prediction 0.427722523423847 Functional Gain - C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45553644 chr21:45553645 synonymous SNV . 0 22 hm5C_associated_SNPs_122694 0 0 1 0 1 C21orf33 chr21:45553720 5'GT 45553720 Upstream 76bp
chr6 100448757 100448757 1 + C A rs563210131 100448756 + 100448736 100448776 41 GGCAGAGATTGACAAAGCAACCCAAAGCAGCAGCTGCCAAC GGCAGAGATTGACAAAGCAACACAAAGCAGCAGCTGCCAAC < 41bp 0.459985771291809 0.713854189469296 0.06332591 0.016148508 prediction 0.427708378938592 Functional Gain - MCHR2-AS1 ENSG00000229315 ncRNA_exonic Human antisense chr6:100448756 chr6:100448757 . . 0 22 hm5C_associated_SNPs_122696 0 0 0 0 1 MCHR2-AS1 chr6:100448670 3'AG 100448670 Downstream 88bp
chr21 30411465 30411465 1 + A G PRAD 30411462 + 30411442 30411482 41 GACACCGAAAGAACTCTTTTCTCAGGTCTGTAAAAAGTGAG GACACCGAAAGAACTCTTTTCTCGGGTCTGTAAAAAGTGAG < 41bp 0.488684710836052 0.713853617040402 0.06885725 0.13812292 prediction 0.427707234080803 Functional Gain - USP16 ENSG00000156256 CDS Human protein_coding chr21:30411462 chr21:30411465 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_122697 0 0 1 0 2 USP16 chr21:30411466 5'GT 30411466 Upstream 2bp
chr21 30411465 30411465 1 + A G PRAD 30411462 + 30411442 30411482 41 GACACCGAAAGAACTCTTTTCTCAGGTCTGTAAAAAGTGAG GACACCGAAAGAACTCTTTTCTCGGGTCTGTAAAAAGTGAG < 41bp 0.488684710836052 0.713853617040402 0.06885725 0.13812292 prediction 0.427707234080803 Functional Gain - USP16 ENSG00000156256 CDS Human protein_coding chr21:30411462 chr21:30411465 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_122697 0 0 1 0 2 USP16 chr21:30411477 5'GT 30411477 Upstream 13bp
chr8 35606107 35606107 1 + T C COAD 35606105 + 35606085 35606125 41 GTCACCTGTGGTCCTCCAGACATGATCGTCACCACTCCCTT GTCACCTGTGGTCCTCCAGACACGATCGTCACCACTCCCTT < 41bp 0.422871178711412 0.713848001913004 0.013968468 0.008898705 prediction 0.427696003826007 Functional Gain - UNC5D ENSG00000156687 CDS Human protein_coding chr8:35606105 chr8:35606107 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_122699 0 0 0 0 1 UNC5D chr8:35606045 3'AG 35606045 Downstream 63bp
chr21 47965811 47965811 1 + A G UCEC 47965808 + 47965788 47965828 41 GTGCAGGCAGTTCCGGTCACCACAGGAGGAGCACCCATCTT GTGCAGGCAGTTCCGGTCACCACGGGAGGAGCACCCATCTT < 41bp 0.573065317901125 0.786910698429661 0.90586185 0.9074063 prediction 0.427690761057071 Functional Gain - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47965808 chr21:47965811 synonymous SNV . 0 24 hm5C_associated_SNPs_122700 0 0 1 0 2 DIP2A chr21:47965794 3'AG 47965794 Downstream 18bp
chr21 47965811 47965811 1 + A G UCEC 47965808 + 47965788 47965828 41 GTGCAGGCAGTTCCGGTCACCACAGGAGGAGCACCCATCTT GTGCAGGCAGTTCCGGTCACCACGGGAGGAGCACCCATCTT < 41bp 0.573065317901125 0.786910698429661 0.90586185 0.9074063 prediction 0.427690761057071 Functional Gain - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47965808 chr21:47965811 synonymous SNV . 0 24 hm5C_associated_SNPs_122700 0 0 1 0 2 DIP2A chr21:47965874 5'GT 47965874 Upstream 64bp
chr17 78092070 78092070 1 + C T rs121907943 78092069 + 78092049 78092089 41 CTGACCAAGGGTGGGGAGGCCCGAGGGGAGCTGTTCTGGGA CTGACCAAGGGTGGGGAGGCCTGAGGGGAGCTGTTCTGGGA < 41bp 0.570561231679638 0.784406165927053 0.85580003 0.87091875 prediction 0.427689868494831 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78092069 chr17:78092070 stopgain 0.021 0 22 hm5C_associated_SNPs_122701 2 0 1 0 2 GAA chr17:78091992 3'AG 78091992 Downstream 79bp
chr17 78092070 78092070 1 + C T rs121907943 78092069 + 78092049 78092089 41 CTGACCAAGGGTGGGGAGGCCCGAGGGGAGCTGTTCTGGGA CTGACCAAGGGTGGGGAGGCCTGAGGGGAGCTGTTCTGGGA < 41bp 0.570561231679638 0.784406165927053 0.85580003 0.87091875 prediction 0.427689868494831 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78092069 chr17:78092070 stopgain 0.021 0 22 hm5C_associated_SNPs_122701 2 0 1 0 2 GAA chr17:78092156 5'GT 78092156 Upstream 87bp
chr8 22451274 22451274 1 + C T ESCA 22451273 + 22451253 22451293 41 GCTGTGCGCATCCAGGAGGGCCGGTACCGCCACCCCGGCTG GCTGTGCGCATCCAGGAGGGCTGGTACCGCCACCCCGGCTG < 41bp 0.472976061411987 0.713836172984148 0.37573215 0.39476362 prediction 0.427672345968296 Functional Gain - PDLIM2 ENSG00000120913;ENSG00000248235 CDS Human other chr8:22451273 chr8:22451274 nonsynonymous SNV 0.987 5 22 hm5C_associated_SNPs_122705 0 0 1 0 2 PDLIM2 chr8:22451246 3'AG 22451246 Downstream 29bp
chr8 22451274 22451274 1 + C T ESCA 22451273 + 22451253 22451293 41 GCTGTGCGCATCCAGGAGGGCCGGTACCGCCACCCCGGCTG GCTGTGCGCATCCAGGAGGGCTGGTACCGCCACCCCGGCTG < 41bp 0.472976061411987 0.713836172984148 0.37573215 0.39476362 prediction 0.427672345968296 Functional Gain - PDLIM2 ENSG00000120913;ENSG00000248235 CDS Human other chr8:22451273 chr8:22451274 nonsynonymous SNV 0.987 5 22 hm5C_associated_SNPs_122705 0 0 1 0 2 PDLIM2 chr8:22451345 5'GT 22451345 Upstream 72bp
chr20 4163201 4163201 1 + C A rs376713573 4163200 + 4163180 4163220 41 GAGAAGGTGGCTGCCATCCACCGCCTGGGCATTGGCACCAC GAGAAGGTGGCTGCCATCCACAGCCTGGGCATTGGCACCAC < 41bp 0.462618826114952 0.713831113269522 0.04117191 0.22620866 prediction 0.427662226539045 Functional Gain - SMOX ENSG00000088826 CDS Human protein_coding chr20:4163200 chr20:4163201 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_122706 0 0 0 0 1 SMOX chr20:4163130 3'AG 4163130 Downstream 72bp
chr15 68466086 68466086 1 + T A LUSC 68466082 + 68466062 68466102 41 TTTTAAAGCTTGGTAAAATGCGGCTGACAATTCCGTGTCGG TTTTAAAGCTTGGTAAAATGCGGCAGACAATTCCGTGTCGG < 41bp 0.684455555240124 0.8982844890851 0.7446192 0.8488352 prediction 0.427657867689951 Functional Gain - PIAS1 ENSG00000033800 CDS Human protein_coding chr15:68466082 chr15:68466086 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_122708 0 0 1 0 1 PIAS1 chr15:68466070 3'AG 68466070 Downstream 17bp
chr2 23608601 23608601 1 + C A rs541955648 23608597 + 23608577 23608617 41 CATCAGCCCTCCTGCGCCCACCCGCGACCCCGGGCTCTCTG CATCAGCCCTCCTGCGCCCACCCGAGACCCCGGGCTCTCTG < 41bp 0.405711157870972 0.713822922383744 0.09679943 0.18726975 prediction 0.427645844767489 Functional Gain - KLHL29 ENSG00000119771 UTR5 Human protein_coding chr2:23608597 chr2:23608601 . . 0 25 hm5C_associated_SNPs_122711 0 0 0 0 1 KLHL29 chr2:23608651 5'GT 23608651 Upstream 51bp
chr22 32200851 32200851 1 + T C STAD 32200849 + 32200829 32200869 41 TCCATAATCGGAGTGCTCCCCGTGATTCTCGTCTGGGCGAT TCCATAATCGGAGTGCTCCCCGCGATTCTCGTCTGGGCGAT < 41bp 0.638208979488083 0.852029226780045 0.3763591 0.873922 prediction 0.427640494583923 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32200849 chr22:32200851 synonymous SNV . 0 23 hm5C_associated_SNPs_122712 0 0 0 0 2 DEPDC5 chr22:32200828 3'AG 32200828 Downstream 24bp
chr22 32200851 32200851 1 + T C STAD 32200849 + 32200829 32200869 41 TCCATAATCGGAGTGCTCCCCGTGATTCTCGTCTGGGCGAT TCCATAATCGGAGTGCTCCCCGCGATTCTCGTCTGGGCGAT < 41bp 0.638208979488083 0.852029226780045 0.3763591 0.873922 prediction 0.427640494583923 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32200849 chr22:32200851 synonymous SNV . 0 23 hm5C_associated_SNPs_122712 0 0 0 0 2 DEPDC5 chr22:32200901 5'GT 32200901 Upstream 51bp
chr21 15646405 15646405 1 + C A rs2236001 15646404 + 15646384 15646424 41 TCAGCCAGCGGCCAGGCGCCCCGCGGACCATGCTCTCCAGT TCAGCCAGCGGCCAGGCGCCCAGCGGACCATGCTCTCCAGT < 41bp 0.594406927497989 0.808220318149025 0.70462465 0.8704904 prediction 0.42762678130207 Functional Gain - ABCC13 ENSG00000243064 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr21:15646404 chr21:15646405 . . 0 22 hm5C_associated_SNPs_122717 0 0 0 0 1 ABCC13 chr21:15646478 5'GT 15646478 Upstream 74bp
chr2 15732010 15732010 1 + T G rs200240684 15732007 + 15731987 15732027 41 CCGCCACTGCCACGCCGTGTCAGTCGGGAGGGAGGGAGCGA CCGCCACTGCCACGCCGTGTCAGGCGGGAGGGAGGGAGCGA < 41bp 0.64740328213628 0.861211523824208 0.08969742 0.8727275 prediction 0.427616483375858 Functional Gain - DDX1 ENSG00000079785 UTR5 Human protein_coding chr2:15732007 chr2:15732010 . . 0 24 hm5C_associated_SNPs_122719 0 0 1 0 1 DDX1 chr2:15732073 5'GT 15732073 Upstream 64bp
chr3 12544934 12544934 1 + T C UCS 12544932 + 12544912 12544952 41 AACTCTGGAATGGTTTCCAACATGGAAGGCACAGCAGGGGG AACTCTGGAATGGTTTCCAACACGGAAGGCACAGCAGGGGG < 41bp 0.62037766874047 0.83418505586446 0.33621842 0.2046836 prediction 0.42761477424798 Functional Gain - TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12544932 chr3:12544934 nonsynonymous SNV 0.015 0 23 hm5C_associated_SNPs_122720 0 0 1 0 1 TSEN2 chr3:12544968 5'GT 12544968 Upstream 35bp
chr7 154585880 154585880 1 + C G HNSC 154585876 + 154585856 154585896 41 GCGCAGAACGTGTCCATCCTCACCCTCTGCGACGCCACCAC GCGCAGAACGTGTCCATCCTCACCGTCTGCGACGCCACCAC < 41bp 0.499272057745556 0.713795783892437 0.092695564 0.28518227 prediction 0.427591567784873 Functional Gain - DPP6 ENSG00000130226 CDS Human protein_coding chr7:154585876 chr7:154585880 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_122722 0 0 0 0 2 DPP6 chr7:154585789 3'AG 154585789 Downstream 92bp
chr7 154585880 154585880 1 + C G HNSC 154585876 + 154585856 154585896 41 GCGCAGAACGTGTCCATCCTCACCCTCTGCGACGCCACCAC GCGCAGAACGTGTCCATCCTCACCGTCTGCGACGCCACCAC < 41bp 0.499272057745556 0.713795783892437 0.092695564 0.28518227 prediction 0.427591567784873 Functional Gain - DPP6 ENSG00000130226 CDS Human protein_coding chr7:154585876 chr7:154585880 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_122722 0 0 0 0 2 DPP6 chr7:154585912 5'GT 154585912 Upstream 33bp
chr17 41001254 41001254 1 + C T LUSC 41001253 + 41001233 41001273 41 TTCCTTGGGAAGCCCCCTACCCCGCTACCTCTACCTGGCTA TTCCTTGGGAAGCCCCCTACCTCGCTACCTCTACCTGGCTA < 41bp 0.443175354047335 0.713793392599387 0.18249819 0.28627765 prediction 0.427586785198773 Functional Gain - AOC2 ENSG00000131480 CDS Human protein_coding chr17:41001253 chr17:41001254 synonymous SNV . 0 22 hm5C_associated_SNPs_122723 0 0 0 0 1 AOC2 chr17:41001307 5'GT 41001307 Upstream 54bp
chr3 147130463 147130463 1 + A G LUSC 147130460 + 147130440 147130480 41 ATCCCAGTTCGCTGCGCAAACACATGAAGGTAATCGCCGCA ATCCCAGTTCGCTGCGCAAACACGTGAAGGTAATCGCCGCA < 41bp 0.586314625662824 0.800103662347573 0.191865 0.33801204 prediction 0.427578073369499 Functional Gain - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147130460 chr3:147130463 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_122724 0 0 0 0 1 ZIC1 chr3:147130468 5'GT 147130468 Upstream 6bp
chr17 66303785 66303785 1 + C T LAML 66303784 + 66303764 66303804 41 GATGACATGGGGTGGGGTGACCTGGGAGCAAACTGGGCAGA GATGACATGGGGTGGGGTGACTTGGGAGCAAACTGGGCAGA < 41bp 0.470665362768949 0.713787323211293 0.891998 0.9000553 prediction 0.427574646422586 Functional Gain - ARSG ENSG00000141337 CDS Human protein_coding chr17:66303784 chr17:66303785 synonymous SNV . 0 22 hm5C_associated_SNPs_122726 0 0 1 0 1 ARSG chr17:66303852 5'GT 66303852 Upstream 68bp
chr2 97783836 97783836 1 + C A UCEC 97783835 + 97783815 97783855 41 TGGCCTGTGCCACTGGCCAACCGGAAATGGTACATCTCCTG TGGCCTGTGCCACTGGCCAACAGGAAATGGTACATCTCCTG < 41bp 0.55351797676547 0.767304359258326 0.8396388 0.9057837 prediction 0.427572764985711 Functional Gain - ANKRD36 ENSG00000135976 CDS Human protein_coding chr2:97783835 chr2:97783836 nonsynonymous SNV 0.000 3 22 hm5C_associated_SNPs_122727 0 0 0 1 2 ANKRD36 chr2:97783801 3'AG 97783801 Downstream 36bp
chr2 97783836 97783836 1 + C A UCEC 97783835 + 97783815 97783855 41 TGGCCTGTGCCACTGGCCAACCGGAAATGGTACATCTCCTG TGGCCTGTGCCACTGGCCAACAGGAAATGGTACATCTCCTG < 41bp 0.55351797676547 0.767304359258326 0.8396388 0.9057837 prediction 0.427572764985711 Functional Gain - ANKRD36 ENSG00000135976 CDS Human protein_coding chr2:97783835 chr2:97783836 nonsynonymous SNV 0.000 3 22 hm5C_associated_SNPs_122727 0 0 0 1 2 ANKRD36 chr2:97783915 5'GT 97783915 Upstream 80bp
chr1 6648819 6648819 1 + T C LUSC 6648817 + 6648797 6648837 41 GGTGTTCTCCCTCTTGCAGCCGTGGAGCAACTGCGTGTGCA GGTGTTCTCCCTCTTGCAGCCGCGGAGCAACTGCGTGTGCA < 41bp 0.595655064711152 0.809439203384283 0.13114083 0.23378888 prediction 0.427568277346261 Functional Gain - ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6648817 chr1:6648819 nonsynonymous SNV 0.363 0 23 hm5C_associated_SNPs_122728 0 0 0 0 2 ZBTB48 chr1:6648816 3'AG 6648816 Downstream 4bp
chr1 6648819 6648819 1 + T C LUSC 6648817 + 6648797 6648837 41 GGTGTTCTCCCTCTTGCAGCCGTGGAGCAACTGCGTGTGCA GGTGTTCTCCCTCTTGCAGCCGCGGAGCAACTGCGTGTGCA < 41bp 0.595655064711152 0.809439203384283 0.13114083 0.23378888 prediction 0.427568277346261 Functional Gain - ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6648817 chr1:6648819 nonsynonymous SNV 0.363 0 23 hm5C_associated_SNPs_122728 0 0 0 0 2 ZBTB48 chr1:6648904 5'GT 6648904 Upstream 86bp
chr5 141318178 141318178 1 + C G rs10056676 141318174 + 141318154 141318194 41 AACACCCTGCTAGCAGGAACCTCACGCCTACCACATGCCTC AACACCCTGCTAGCAGGAACCTCAGGCCTACCACATGCCTC < 41bp 0.423771100934654 0.713779015075477 0.049335152 0.28896105 prediction 0.427558030150954 Functional Gain - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141318174 chr5:141318178 nonsynonymous SNV 0.028 0 25 hm5C_associated_SNPs_122729 0 0 1 0 1 KIAA0141 chr5:141318086 3'AG 141318086 Downstream 93bp
chr3 42730520 42730520 1 + C T UCEC 42730519 + 42730499 42730539 41 CACAGGGCTGACCAGTTCTGCCGAAGTGTACAGCATCACAG CACAGGGCTGACCAGTTCTGCTGAAGTGTACAGCATCACAG < 41bp 0.468255935686709 0.713773556449881 0.09453383 0.0728488 prediction 0.427547112899762 Functional Gain - KLHL40 ENSG00000157119 CDS Human protein_coding chr3:42730519 chr3:42730520 synonymous SNV . 0 22 hm5C_associated_SNPs_122733 0 0 0 0 1 KLHL40 chr3:42730546 5'GT 42730546 Upstream 27bp
chr16 3118240 3118240 1 + A G rs140322567 3118237 + 3118217 3118257 41 GCTTATTATGAGGAGCAGCACCCAGTGAGTATGACACACCC GCTTATTATGAGGAGCAGCACCCGGTGAGTATGACACACCC < 41bp 0.487202518595957 0.713771477240955 0.1716271 0.4609066 prediction 0.427542954481909 Functional Gain - IL32 ENSG00000008517 CDS Human protein_coding chr16:3118237 chr16:3118240 synonymous SNV . 0 24 hm5C_associated_SNPs_122736 0 0 0 0 2 IL32 chr16:3118181 3'AG 3118181 Downstream 60bp
chr16 3118240 3118240 1 + A G rs140322567 3118237 + 3118217 3118257 41 GCTTATTATGAGGAGCAGCACCCAGTGAGTATGACACACCC GCTTATTATGAGGAGCAGCACCCGGTGAGTATGACACACCC < 41bp 0.487202518595957 0.713771477240955 0.1716271 0.4609066 prediction 0.427542954481909 Functional Gain - IL32 ENSG00000008517 CDS Human protein_coding chr16:3118237 chr16:3118240 synonymous SNV . 0 24 hm5C_associated_SNPs_122736 0 0 0 0 2 IL32 chr16:3118240 5'GT 3118240 Upstream 1bp
chr8 24324450 24324450 1 + C A LUAD 24324449 + 24324429 24324469 41 CTGTACAGAGCTTAATTTTACCAGAAAAACTGTTCCAGGGG CTGTACAGAGCTTAATTTTACAAGAAAAACTGTTCCAGGGG < 41bp 0.617545597993225 0.831310352114664 0.5249446 0.68419814 prediction 0.427529508242877 Functional Gain - ADAM7 ENSG00000069206 CDS Human protein_coding chr8:24324449 chr8:24324450 synonymous SNV . 0 22 hm5C_associated_SNPs_122737 0 0 0 0 1 ADAM7 chr8:24324501 5'GT 24324501 Upstream 52bp
chr7 141803166 141803166 1 + C T SKCM 141803165 + 141803145 141803185 41 TCTGGGGAGTGGGCAGTGTCCCCGTTACCAGTGTCAGCATC TCTGGGGAGTGGGCAGTGTCCTCGTTACCAGTGTCAGCATC < 41bp 0.468541692459227 0.713764034190966 0.2412698 0.2026667 prediction 0.427528068381932 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141803165 chr7:141803166 nonsynonymous SNV 0.060 2 22 hm5C_associated_SNPs_122738 0 0 0 0 2 MGAM chr7:141803069 3'AG 141803069 Downstream 98bp
chr7 141803166 141803166 1 + C T SKCM 141803165 + 141803145 141803185 41 TCTGGGGAGTGGGCAGTGTCCCCGTTACCAGTGTCAGCATC TCTGGGGAGTGGGCAGTGTCCTCGTTACCAGTGTCAGCATC < 41bp 0.468541692459227 0.713764034190966 0.2412698 0.2026667 prediction 0.427528068381932 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141803165 chr7:141803166 nonsynonymous SNV 0.060 2 22 hm5C_associated_SNPs_122738 0 0 0 0 2 MGAM chr7:141803239 5'GT 141803239 Upstream 74bp
chr19 21203592 21203592 1 + C G rs73546306 21203591 + 21203571 21203611 41 ACAGCTAAGACGCCAGGAACCCCTGGAAGCCTAGAAATGGT ACAGCTAAGACGCCAGGAACCGCTGGAAGCCTAGAAATGGT < 41bp 0.497814769006259 0.713755370279873 0.09200323 0.2327452 prediction 0.427510740559745 Functional Gain - ZNF430 ENSG00000118620 UTR5 Human protein_coding chr19:21203591 chr19:21203592 . . 0 22 hm5C_associated_SNPs_122741 0 0 1 0 1 ZNF430 chr19:21203609 5'GT 21203609 Upstream 18bp
chr12 7459301 7459301 1 + C T SKCM 7459300 + 7459280 7459320 41 CCGTGATTCTGCCCAGAATCCCTGAGTGGTGGCTGGTCAAT CCGTGATTCTGCCCAGAATCCTTGAGTGGTGGCTGGTCAAT < 41bp 0.616035041038603 0.829789823742123 0.04084927 0.053483784 prediction 0.42750956540704 Functional Gain - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7459300 chr12:7459301 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_122742 0 0 0 0 1 ACSM4 chr12:7459339 5'GT 7459339 Upstream 39bp
chr20 45633640 45633640 1 + C A LUAD 45633636 + 45633616 45633656 41 CAGCCATGGCAGCCTACGGCCAGACGCAGTACAGTGCGGGG CAGCCATGGCAGCCTACGGCCAGAAGCAGTACAGTGCGGGG < 41bp 0.307680437284337 0.713754076758171 0.7018286 0.55995184 prediction 0.427508153516341 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45633636 chr20:45633640 nonsynonymous SNV 0.927 4 25 hm5C_associated_SNPs_122743 0 0 0 0 2 EYA2 chr20:45633581 3'AG 45633581 Downstream 60bp
chr20 45633640 45633640 1 + C A LUAD 45633636 + 45633616 45633656 41 CAGCCATGGCAGCCTACGGCCAGACGCAGTACAGTGCGGGG CAGCCATGGCAGCCTACGGCCAGAAGCAGTACAGTGCGGGG < 41bp 0.307680437284337 0.713754076758171 0.7018286 0.55995184 prediction 0.427508153516341 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45633636 chr20:45633640 nonsynonymous SNV 0.927 4 25 hm5C_associated_SNPs_122743 0 0 0 0 2 EYA2 chr20:45633723 5'GT 45633723 Upstream 84bp
chr1 28208513 28208513 1 + C A READ 28208509 + 28208489 28208529 41 GACCATTGTCAAGATCCCTTCTACCCTGGAGGTCGACGTGG GACCATTGTCAAGATCCCTTCTACACTGGAGGTCGACGTGG < 41bp 0.290715323078531 0.713753575018737 0.1670143 0.42143297 prediction 0.427507150037474 Functional Gain - THEMIS2 ENSG00000130775 CDS Human protein_coding chr1:28208509 chr1:28208513 synonymous SNV . 0 25 hm5C_associated_SNPs_122744 0 0 0 0 1 THEMIS2 chr1:28208482 3'AG 28208482 Downstream 32bp
chr15 40707679 40707679 1 + C T SKCM 40707678 + 40707658 40707698 41 GGCCAGAAGATCGGCCACTTCCAGGTGAGCCGAGTGCTTTT GGCCAGAAGATCGGCCACTTCTAGGTGAGCCGAGTGCTTTT < 41bp 0.608954007265602 0.822705070229849 0.89267194 0.5887833 prediction 0.427502125928494 Functional Gain - IVD ENSG00000128928 CDS Human protein_coding chr15:40707678 chr15:40707679 stopgain 0.991 1 22 hm5C_associated_SNPs_122745 0 0 1 0 2 IVD chr15:40707600 3'AG 40707600 Downstream 80bp
chr15 40707679 40707679 1 + C T SKCM 40707678 + 40707658 40707698 41 GGCCAGAAGATCGGCCACTTCCAGGTGAGCCGAGTGCTTTT GGCCAGAAGATCGGCCACTTCTAGGTGAGCCGAGTGCTTTT < 41bp 0.608954007265602 0.822705070229849 0.89267194 0.5887833 prediction 0.427502125928494 Functional Gain - IVD ENSG00000128928 CDS Human protein_coding chr15:40707678 chr15:40707679 stopgain 0.991 1 22 hm5C_associated_SNPs_122745 0 0 1 0 2 IVD chr15:40707681 5'GT 40707681 Upstream 3bp
chr1 9770625 9770625 1 + C T GBM 9770624 + 9770604 9770644 41 TACCTGAACTTCCCTGTGTCCCGCAATGCCAACCTCAGCAC TACCTGAACTTCCCTGTGTCCTGCAATGCCAACCTCAGCAC < 41bp 0.609046336006546 0.822792591410099 0.06781778 0.15102905 prediction 0.427492510807107 Functional Gain - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9770624 chr1:9770625 nonsynonymous SNV 0.984 0 22 hm5C_associated_SNPs_122746 0 0 0 0 1 PIK3CD chr1:9770654 5'GT 9770654 Upstream 30bp
chr16 89799778 89799778 1 + C A BLCA 89799777 + 89799757 89799797 41 AACCAAGAATTCGGAAGAAGCCGGGACCCAAGCCCGGATGG AACCAAGAATTCGGAAGAAGCAGGGACCCAAGCCCGGATGG < 41bp 0.62091834129868 0.834664069431529 0.9083707 0.91877717 prediction 0.4274914562657 Functional Gain - ZNF276 ENSG00000158805 CDS Human protein_coding chr16:89799777 chr16:89799778 nonsynonymous SNV 0.773 4 22 hm5C_associated_SNPs_122747 0 0 1 0 1 ZNF276 chr16:89799820 5'GT 89799820 Upstream 43bp
chr16 30990508 30990508 1 + C G KICH 30990507 + 30990487 30990527 41 CCAGTGCGCCTCTGCGTCCCCCAGAACCACCTGCTGGGCCC CCAGTGCGCCTCTGCGTCCCCGAGAACCACCTGCTGGGCCC < 41bp 0.675068134526413 0.888806752158226 0.3979953 0.91028166 prediction 0.427477235263626 Functional Gain - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30990507 chr16:30990508 nonsynonymous SNV 0.023 2 22 hm5C_associated_SNPs_122750 0 0 1 0 1 SETD1A chr16:30990466 3'AG 30990466 Downstream 43bp
chr3 38156492 38156492 1 + C T rs116619354 38156491 + 38156471 38156511 41 CAGGTTCGGCACCCAGGTCTCCGGAGGAGACACAGTTACCC CAGGTTCGGCACCCAGGTCTCTGGAGGAGACACAGTTACCC < 41bp 0.600606260177643 0.814339441675968 0.95048904 0.9392767 prediction 0.427466362996651 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38156491 chr3:38156492 synonymous SNV . 0 22 hm5C_associated_SNPs_122755 0 0 0 0 2 DLEC1 chr3:38156474 3'AG 38156474 Downstream 19bp
chr3 38156492 38156492 1 + C T rs116619354 38156491 + 38156471 38156511 41 CAGGTTCGGCACCCAGGTCTCCGGAGGAGACACAGTTACCC CAGGTTCGGCACCCAGGTCTCTGGAGGAGACACAGTTACCC < 41bp 0.600606260177643 0.814339441675968 0.95048904 0.9392767 prediction 0.427466362996651 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38156491 chr3:38156492 synonymous SNV . 0 22 hm5C_associated_SNPs_122755 0 0 0 0 2 DLEC1 chr3:38156544 5'GT 38156544 Upstream 53bp
chr11 89405081 89405081 1 + C A LUAD 89405080 + 89405060 89405100 41 TATGTCATTCTGGGAGGTCACCGGGACTCATGGGTGTTTGG TATGTCATTCTGGGAGGTCACAGGGACTCATGGGTGTTTGG < 41bp 0.596501591084426 0.810228680292741 0.9218898 0.9107013 prediction 0.427454178416631 Functional Gain - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89405080 chr11:89405081 . . 0 22 hm5C_associated_SNPs_122757 0 0 0 0 2 FOLH1B chr11:89405055 3'AG 89405055 Downstream 27bp
chr11 89405081 89405081 1 + C A LUAD 89405080 + 89405060 89405100 41 TATGTCATTCTGGGAGGTCACCGGGACTCATGGGTGTTTGG TATGTCATTCTGGGAGGTCACAGGGACTCATGGGTGTTTGG < 41bp 0.596501591084426 0.810228680292741 0.9218898 0.9107013 prediction 0.427454178416631 Functional Gain - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89405080 chr11:89405081 . . 0 22 hm5C_associated_SNPs_122757 0 0 0 0 2 FOLH1B chr11:89405174 5'GT 89405174 Upstream 94bp
chr9 15423928 15423928 1 + T C COAD 15423926 + 15423906 15423946 41 GCCTTGATAAACTGAAATGCCTTGAGGACGGTGAGGATCCA GCCTTGATAAACTGAAATGCCTCGAGGACGGTGAGGATCCA < 41bp 0.665053598635716 0.878769183634568 0.06986785 0.28666863 prediction 0.427431169997704 Functional Gain - SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15423926 chr9:15423928 synonymous SNV . 0 23 hm5C_associated_SNPs_122760 0 0 1 0 2 SNAPC3 chr9:15423907 3'AG 15423907 Downstream 22bp
chr9 15423928 15423928 1 + T C COAD 15423926 + 15423906 15423946 41 GCCTTGATAAACTGAAATGCCTTGAGGACGGTGAGGATCCA GCCTTGATAAACTGAAATGCCTCGAGGACGGTGAGGATCCA < 41bp 0.665053598635716 0.878769183634568 0.06986785 0.28666863 prediction 0.427431169997704 Functional Gain - SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15423926 chr9:15423928 synonymous SNV . 0 23 hm5C_associated_SNPs_122760 0 0 1 0 2 SNAPC3 chr9:15423984 5'GT 15423984 Upstream 57bp
chr5 1232411 1232411 1 + C A LUAD 1232407 + 1232387 1232427 41 TTCCACGTCGAGCTCGCCATCGGCCAGCGGCTGCGGAAGGG TTCCACGTCGAGCTCGCCATCGGCAAGCGGCTGCGGAAGGG < 41bp 0.727123542504141 0.940837776714764 0.34973335 0.74290913 prediction 0.427428468421245 Functional Gain - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1232407 chr5:1232411 nonsynonymous SNV 0.839 4 25 hm5C_associated_SNPs_122761 0 0 0 0 2 SLC6A18 chr5:1232334 3'AG 1232334 Downstream 78bp
chr5 1232411 1232411 1 + C A LUAD 1232407 + 1232387 1232427 41 TTCCACGTCGAGCTCGCCATCGGCCAGCGGCTGCGGAAGGG TTCCACGTCGAGCTCGCCATCGGCAAGCGGCTGCGGAAGGG < 41bp 0.727123542504141 0.940837776714764 0.34973335 0.74290913 prediction 0.427428468421245 Functional Gain - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1232407 chr5:1232411 nonsynonymous SNV 0.839 4 25 hm5C_associated_SNPs_122761 0 0 0 0 2 SLC6A18 chr5:1232474 5'GT 1232474 Upstream 64bp
chr8 26492304 26492304 1 + C T HNSC 26492303 + 26492283 26492323 41 TGCTGTTTTGCAGGTCGAGGCCGAAGCCGTGAATCGTGCCA TGCTGTTTTGCAGGTCGAGGCTGAAGCCGTGAATCGTGCCA < 41bp 0.467867803387601 0.713712559719959 0.34914213 0.29973733 prediction 0.427425119439918 Functional Gain - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26492303 chr8:26492304 synonymous SNV . 0 22 hm5C_associated_SNPs_122762 0 0 1 0 1 DPYSL2 chr8:26492296 3'AG 26492296 Downstream 9bp
chr11 64853951 64853951 1 + C T CESC 64853950 + 64853930 64853970 41 ACCCCGAAACACGGCACCTGCCGGCTATCAGTGCCCCAGCT ACCCCGAAACACGGCACCTGCTGGCTATCAGTGCCCCAGCT < 41bp 0.596959595193859 0.810669828148831 0.1794996 0.096944064 prediction 0.427420465909945 Functional Gain - ZFPL1 ENSG00000162300 CDS Human protein_coding chr11:64853950 chr11:64853951 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_122763 0 0 1 0 1 ZFPL1 chr11:64853887 3'AG 64853887 Downstream 65bp
chr15 81571979 81571979 1 + C A LUAD 81571975 + 81571955 81571995 41 TTCCCTGTGCAGCCACCTGTCTCCCCCACTGTGCCGCTCCC TTCCCTGTGCAGCCACCTGTCTCCACCACTGTGCCGCTCCC < 41bp 0.290229325915716 0.713704655377571 0.18045288 0.9436119 prediction 0.427409310755142 Functional Gain - IL16 ENSG00000172349 CDS Human protein_coding chr15:81571975 chr15:81571979 synonymous SNV . 0 25 hm5C_associated_SNPs_122765 0 0 0 0 1 IL16 chr15:81571899 3'AG 81571899 Downstream 81bp
chr10 124345650 124345650 1 + C T UCEC 124345649 + 124345629 124345669 41 GGCCGAGTGGAGGTCCTATACCGAGGCTCCTGGGGCACCGT GGCCGAGTGGAGGTCCTATACTGAGGCTCCTGGGGCACCGT < 41bp 0.489098348875567 0.713704162214026 0.89745677 0.88589776 prediction 0.427408324428052 Functional Gain - DMBT1 ENSG00000187908 CDS Human protein_coding chr10:124345649 chr10:124345650 stopgain 0.478 0 22 hm5C_associated_SNPs_122766 0 0 0 0 1 DMBT1 chr10:124345576 3'AG 124345576 Downstream 75bp
chr11 94300723 94300723 1 + C T LUSC 94300722 + 94300702 94300742 41 AGTGAAGGCCAGAGGCATCGCCCGCAGCCCCAGTGCCACAG AGTGAAGGCCAGAGGCATCGCTCGCAGCCCCAGTGCCACAG < 41bp 0.537755834494682 0.751459335452822 0.09653148 0.0890854 prediction 0.427407001916279 Functional Gain - PIWIL4 ENSG00000134627 CDS Human protein_coding chr11:94300722 chr11:94300723 synonymous SNV . 0 22 hm5C_associated_SNPs_122767 0 0 0 0 1 PIWIL4 chr11:94300771 5'GT 94300771 Upstream 49bp
chr17 63200295 63200295 1 + C T UCEC 63200294 + 63200274 63200314 41 ACCCCAGGCTGTTCCTGGCCCCGGGGGCGAGGCGCTGGATC ACCCCAGGCTGTTCCTGGCCCTGGGGGCGAGGCGCTGGATC < 41bp 0.59634385385871 0.810047142097633 0.84808 0.3647579 prediction 0.427406576477845 Functional Gain - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63200294 chr17:63200295 nonsynonymous SNV 0.947 4 22 hm5C_associated_SNPs_122768 0 0 0 0 1 RGS9 chr17:63200281 3'AG 63200281 Downstream 15bp
chrX 103045503 103045503 1 + A G STAD 103045500 + 103045480 103045520 41 ACAACTTTGCCGTCCTTAAACTCATGGGCCGAGGCACCAAG ACAACTTTGCCGTCCTTAAACTCGTGGGCCGAGGCACCAAG < 41bp 0.564950243465975 0.778647267008668 0.04659009 0.11145252 prediction 0.427394047085386 Functional Gain - PLP1 ENSG00000123560 CDS Human protein_coding chrX:103045500 chrX:103045503 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_122769 0 0 1 0 1 PLP1 chrX:103045455 3'AG 103045455 Downstream 49bp
chr16 842344 842344 1 + C T STAD 842343 + 842323 842363 41 CGATGAGATCGACGGGGCCCCCGTGGTGGGCTCCTTGATGC CGATGAGATCGACGGGGCCCCTGTGGTGGGCTCCTTGATGC < 41bp 0.491507768707403 0.713693167729649 0.30944687 0.21335357 prediction 0.427386335459299 Functional Gain - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842343 chr16:842344 synonymous SNV . 0 22 hm5C_associated_SNPs_122770 0 0 1 0 1 CHTF18 chr16:842367 5'GT 842367 Upstream 24bp
chr11 6413366 6413366 1 + C T rs72896268 6413365 + 6413345 6413385 41 TTGGGAGCCCTGGCTGCCTGCCGAAGCCCTGCGCACCCTCA TTGGGAGCCCTGGCTGCCTGCTGAAGCCCTGCGCACCCTCA < 41bp 0.57228399291497 0.785966310429996 0.4598288 0.245098 prediction 0.427364635030052 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413365 chr11:6413366 synonymous SNV . 0 22 hm5C_associated_SNPs_122775 2 0 1 0 2 SMPD1 chr11:6413386 5'GT 6413386 Upstream 21bp
chr11 6413366 6413366 1 + C T rs72896268 6413365 + 6413345 6413385 41 TTGGGAGCCCTGGCTGCCTGCCGAAGCCCTGCGCACCCTCA TTGGGAGCCCTGGCTGCCTGCTGAAGCCCTGCGCACCCTCA < 41bp 0.57228399291497 0.785966310429996 0.4598288 0.245098 prediction 0.427364635030052 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413365 chr11:6413366 synonymous SNV . 0 22 hm5C_associated_SNPs_122775 2 0 1 0 2 SMPD1 chr11:6413426 5'GT 6413426 Upstream 61bp
chr19 54969164 54969164 1 + C A UCEC 54969163 + 54969143 54969183 41 GAGGTGTACGAGACCCATGCCCGGATCGCCTTGGAGAAGGT GAGGTGTACGAGACCCATGCCAGGATCGCCTTGGAGAAGGT < 41bp 0.444834193580259 0.713670718855739 0.11166069 0.7725096 prediction 0.427341437711478 Functional Gain - LENG8 ENSG00000167615 CDS Human protein_coding chr19:54969163 chr19:54969164 synonymous SNV . 0 22 hm5C_associated_SNPs_122778 0 0 1 0 2 LENG8 chr19:54969113 3'AG 54969113 Downstream 52bp
chr19 54969164 54969164 1 + C A UCEC 54969163 + 54969143 54969183 41 GAGGTGTACGAGACCCATGCCCGGATCGCCTTGGAGAAGGT GAGGTGTACGAGACCCATGCCAGGATCGCCTTGGAGAAGGT < 41bp 0.444834193580259 0.713670718855739 0.11166069 0.7725096 prediction 0.427341437711478 Functional Gain - LENG8 ENSG00000167615 CDS Human protein_coding chr19:54969163 chr19:54969164 synonymous SNV . 0 22 hm5C_associated_SNPs_122778 0 0 1 0 2 LENG8 chr19:54969181 5'GT 54969181 Upstream 18bp
chr17 38346943 38346943 1 + C T KICH 38346942 + 38346922 38346962 41 CCTGGAGACACAGAGATCCACCGAGTGGAGCCTGAGGACGT CCTGGAGACACAGAGATCCACTGAGTGGAGCCTGAGGACGT < 41bp 0.456025491882555 0.713665916260804 0.7060214 0.7924709 prediction 0.427331832521607 Functional Gain - RAPGEFL1 ENSG00000108352 CDS Human protein_coding chr17:38346942 chr17:38346943 stopgain 0.991 0 22 hm5C_associated_SNPs_122781 0 0 1 0 2 RAPGEFL1 chr17:38346892 3'AG 38346892 Downstream 52bp
chr17 38346943 38346943 1 + C T KICH 38346942 + 38346922 38346962 41 CCTGGAGACACAGAGATCCACCGAGTGGAGCCTGAGGACGT CCTGGAGACACAGAGATCCACTGAGTGGAGCCTGAGGACGT < 41bp 0.456025491882555 0.713665916260804 0.7060214 0.7924709 prediction 0.427331832521607 Functional Gain - RAPGEFL1 ENSG00000108352 CDS Human protein_coding chr17:38346942 chr17:38346943 stopgain 0.991 0 22 hm5C_associated_SNPs_122781 0 0 1 0 2 RAPGEFL1 chr17:38347014 5'GT 38347014 Upstream 72bp
chr1 116941337 116941337 1 + A G KIRP 116941334 + 116941314 116941354 41 TGCTATGGGGATTGCTGGCTCAGATGTGTCCAAGCAAGCTG TGCTATGGGGATTGCTGGCTCAGGTGTGTCCAAGCAAGCTG < 41bp 0.468378400968502 0.713665203890898 0.27014816 0.86060953 prediction 0.427330407781797 Functional Gain - ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116941334 chr1:116941337 nonsynonymous SNV 0.994 5 24 hm5C_associated_SNPs_122782 0 0 1 0 1 ATP1A1 chr1:116941411 5'GT 116941411 Upstream 75bp
chr3 52523677 52523677 1 + C T SKCM 52523676 + 52523656 52523696 41 AGCGCCATCATCGAGCTCTTCCACAGCAGCATTGCTGAGGT AGCGCCATCATCGAGCTCTTCTACAGCAGCATTGCTGAGGT < 41bp 0.451234191339317 0.713660625534561 0.30421543 0.90323967 prediction 0.427321251069121 Functional Gain - NISCH ENSG00000010322 CDS Human protein_coding chr3:52523676 chr3:52523677 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_122784 0 0 1 1 1 NISCH chr3:52523694 5'GT 52523694 Upstream 18bp
chr2 128384640 128384640 1 + C A LUSC 128384636 + 128384616 128384656 41 CTGCAGTGGCCGCTGCTCTTCTCCCGGCTCTTCGAAGTCAT CTGCAGTGGCCGCTGCTCTTCTCCAGGCTCTTCGAAGTCAT < 41bp 0.287003646075713 0.71364603310617 0.114403605 0.9228169 prediction 0.427292066212341 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128384636 chr2:128384640 synonymous SNV . 0 25 hm5C_associated_SNPs_122787 0 0 0 0 1 MYO7B chr2:128384550 3'AG 128384550 Downstream 91bp
chr17 1943099 1943099 1 + C G rs80150196 1943098 + 1943078 1943118 41 AGTCTGTCATGATTGCCAACCCCAATGTCCCCGCTTACCGG AGTCTGTCATGATTGCCAACCGCAATGTCCCCGCTTACCGG < 41bp 0.392067359271487 0.713644310642669 0.56461644 0.1600497 prediction 0.427288621285338 Functional Gain - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1943098 chr17:1943099 nonsynonymous SNV 0.834 4 22 hm5C_associated_SNPs_122790 0 0 1 0 2 DPH1 chr17:1943049 3'AG 1943049 Downstream 51bp
chr17 1943099 1943099 1 + C G rs80150196 1943098 + 1943078 1943118 41 AGTCTGTCATGATTGCCAACCCCAATGTCCCCGCTTACCGG AGTCTGTCATGATTGCCAACCGCAATGTCCCCGCTTACCGG < 41bp 0.392067359271487 0.713644310642669 0.56461644 0.1600497 prediction 0.427288621285338 Functional Gain - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1943098 chr17:1943099 nonsynonymous SNV 0.834 4 22 hm5C_associated_SNPs_122790 0 0 1 0 2 DPH1 chr17:1943117 5'GT 1943117 Upstream 19bp
chr9 130911883 130911883 1 + C A LUAD 130911882 + 130911862 130911902 41 GCCCAGGACTCCACCTCAGACCTGATCCCAGCCCCACCTCT GCCCAGGACTCCACCTCAGACATGATCCCAGCCCCACCTCT < 41bp 0.44887858108145 0.713643708435517 0.11503887 0.112127185 prediction 0.427287416871034 Functional Gain - LCN2 ENSG00000148346 CDS Human protein_coding chr9:130911882 chr9:130911883 nonsynonymous SNV 0.107 0 22 hm5C_associated_SNPs_122791 0 0 0 0 1 LCN2 chr9:130911942 5'GT 130911942 Upstream 60bp
chr20 44108723 44108723 1 + C T SKCM 44108722 + 44108702 44108742 41 GGAAGGTGTCCTGTGTCACTCCCAATTTCTGAGGTAAGTGA GGAAGGTGTCCTGTGTCACTCTCAATTTCTGAGGTAAGTGA < 41bp 0.450680744831462 0.71364251712767 0.37085992 0.5269052 prediction 0.427285034255339 Functional Gain - WFDC2 ENSG00000101443 CDS Human protein_coding chr20:44108722 chr20:44108723 nonsynonymous SNV 0.252 4 22 hm5C_associated_SNPs_122792 0 0 0 0 1 WFDC2 chr20:44108734 5'GT 44108734 Upstream 12bp
chr19 1254389 1254389 1 + C G rs373111260 1254385 + 1254365 1254405 41 TGTCCAGTGCCGCCCGAGTCCCCCCGGTGCCCACCAGCCCG TGTCCAGTGCCGCCCGAGTCCCCCGGGTGCCCACCAGCCCG < 41bp 0.426829178839881 0.71363467279783 0.09213954 0.10962078 prediction 0.427269345595661 Functional Gain - MIDN ENSG00000167470 CDS Human protein_coding chr19:1254385 chr19:1254389 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_122794 0 0 1 0 1 MIDN chr19:1254477 5'GT 1254477 Upstream 89bp
chr12 2659199 2659199 1 + C G LUAD 2659195 + 2659175 2659215 41 GAGAAAACTGCGGGGCCAGGCTGGCGTGAGTAGGCACGGCG GAGAAAACTGCGGGGCCAGGCTGGGGTGAGTAGGCACGGCG < 41bp 0.531106504330254 0.744739695921915 0.5260717 0.8855084 prediction 0.427266383183323 Functional Gain - CACNA1C ENSG00000151067 CDS Human protein_coding chr12:2659195 chr12:2659199 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_122796 0 0 0 0 2 CACNA1C chr12:2659109 3'AG 2659109 Downstream 91bp
chr12 2659199 2659199 1 + C G LUAD 2659195 + 2659175 2659215 41 GAGAAAACTGCGGGGCCAGGCTGGCGTGAGTAGGCACGGCG GAGAAAACTGCGGGGCCAGGCTGGGGTGAGTAGGCACGGCG < 41bp 0.531106504330254 0.744739695921915 0.5260717 0.8855084 prediction 0.427266383183323 Functional Gain - CACNA1C ENSG00000151067 CDS Human protein_coding chr12:2659195 chr12:2659199 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_122796 0 0 0 0 2 CACNA1C chr12:2659199 5'GT 2659199 Upstream 1bp
chrX 75397503 75397503 1 + T C UCEC 75397500 + 75397480 75397520 41 ATTGCTCGGAACCGGGAAGGCTATAACAAAGCTGTTTATAT ATTGCTCGGAACCGGGAAGGCTACAACAAAGCTGTTTATAT < 41bp 0.54437822484498 0.758011084452679 0.6304816 0.89518 prediction 0.427265719215397 Functional Gain - PBDC1 ENSG00000102390 CDS Human protein_coding chrX:75397500 chrX:75397503 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_122797 0 0 0 0 1 PBDC1 chrX:75397451 3'AG 75397451 Downstream 53bp
chr3 38035889 38035889 1 + C T STAD 38035888 + 38035868 38035908 41 GGACGAGCTGGGGGGCCAGACCGTGCTGCACCGCGAGGCGC GGACGAGCTGGGGGGCCAGACTGTGCTGCACCGCGAGGCGC < 41bp 0.578513684467561 0.792135536600822 0.25586188 0.2429978 prediction 0.427243704266523 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38035888 chr3:38035889 synonymous SNV . 0 22 hm5C_associated_SNPs_122801 0 0 0 0 1 VILL chr3:38035957 5'GT 38035957 Upstream 69bp
chr4 40778146 40778146 1 + C A rs2465570 40778142 + 40778122 40778162 41 TGATGTCTTAATGGTCAATACAGGCTCATGGTACACAGTTT TGATGTCTTAATGGTCAATACAGGATCATGGTACACAGTTT < 41bp 0.307227872945221 0.713614106351902 0.13538677 0.27396518 prediction 0.427228212703804 Functional Gain - NSUN7 ENSG00000179299 CDS Human protein_coding chr4:40778142 chr4:40778146 synonymous SNV . 0 25 hm5C_associated_SNPs_122804 0 0 0 0 1 NSUN7 chr4:40778066 3'AG 40778066 Downstream 81bp
chr2 111881427 111881427 1 + C T SKCM 111881426 + 111881406 111881446 41 CAGACCTGGGGCCCCTACCTCCCTACAGACAGAGCCACAAG CAGACCTGGGGCCCCTACCTCTCTACAGACAGAGCCACAAG < 41bp 0.460821752131898 0.713612532411848 0.16343278 0.92232025 prediction 0.427225064823696 Functional Gain - BCL2L11 ENSG00000153094 CDS Human protein_coding chr2:111881426 chr2:111881427 synonymous SNV . 0 22 hm5C_associated_SNPs_122805 0 0 1 0 1 BCL2L11 chr2:111881446 5'GT 111881446 Upstream 20bp
chr2 27305987 27305987 1 + C T SKCM 27305986 + 27305966 27306006 41 GCAGCTGCGGCTGGTGGGCTCCGGCCTGCACACGGTGGAAG GCAGCTGCGGCTGGTGGGCTCTGGCCTGCACACGGTGGAAG < 41bp 0.529121052482674 0.742726728541589 0.6353932 0.41149068 prediction 0.42721135211783 Functional Gain - EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27305986 chr2:27305987 synonymous SNV . 0 22 hm5C_associated_SNPs_122806 0 0 1 0 1 EMILIN1 chr2:27305907 3'AG 27305907 Downstream 81bp
chr17 6919973 6919973 1 + C T CESC 6919972 + 6919952 6919992 41 CAGCTCCAGTGTCCCTGAGGCCGGGGGTCCCCCCATAAAGA CAGCTCCAGTGTCCCTGAGGCTGGGGGTCCCCCCATAAAGA < 41bp 0.593943809977205 0.807548101384321 0.24960876 0.130299 prediction 0.427208582814232 Functional Gain - C17orf49 ENSG00000161939;ENSG00000258315 CDS Human other chr17:6919972 chr17:6919973 synonymous SNV . 0 22 hm5C_associated_SNPs_122807 0 0 1 0 1 C17orf49 chr17:6920004 5'GT 6920004 Upstream 32bp
chr4 43032461 43032461 1 + C T rs61733348 43032460 + 43032440 43032480 41 GTGCCATGGGAGCAAGATGTCCATGTTTCGAAACTGCTTCA GTGCCATGGGAGCAAGATGTCTATGTTTCGAAACTGCTTCA < 41bp 0.484858539552469 0.713602028846919 0.026270509 0.03477916 prediction 0.427204057693837 Functional Gain - GRXCR1 ENSG00000215203 CDS Human protein_coding chr4:43032460 chr4:43032461 synonymous SNV . 0 22 hm5C_associated_SNPs_122809 1 0 0 0 1 GRXCR1 chr4:43032378 3'AG 43032378 Downstream 84bp
chr7 64853813 64853813 1 + A G LUSC 64853810 + 64853790 64853830 41 CATGAGATGGTAGACAAAACCCCAGGTAGGTGACAGTTAAT CATGAGATGGTAGACAAAACCCCGGGTAGGTGACAGTTAAT < 41bp 0.523069662386158 0.73667007324988 0.24972317 0.44368696 prediction 0.427200821727445 Functional Gain - ZNF92 ENSG00000146757 CDS Human protein_coding chr7:64853810 chr7:64853813 synonymous SNV . 0 24 hm5C_associated_SNPs_122810 0 0 1 0 2 ZNF92 chr7:64853719 3'AG 64853719 Downstream 95bp
chr7 64853813 64853813 1 + A G LUSC 64853810 + 64853790 64853830 41 CATGAGATGGTAGACAAAACCCCAGGTAGGTGACAGTTAAT CATGAGATGGTAGACAAAACCCCGGGTAGGTGACAGTTAAT < 41bp 0.523069662386158 0.73667007324988 0.24972317 0.44368696 prediction 0.427200821727445 Functional Gain - ZNF92 ENSG00000146757 CDS Human protein_coding chr7:64853810 chr7:64853813 synonymous SNV . 0 24 hm5C_associated_SNPs_122810 0 0 1 0 2 ZNF92 chr7:64853814 5'GT 64853814 Upstream 2bp
chr12 111342488 111342488 1 + T C UCEC 111342486 + 111342466 111342506 41 GAGGCTGAGATCCCGCCACCCTTCATCAACCCTTTCTGGGG GAGGCTGAGATCCCGCCACCCTCCATCAACCCTTTCTGGGG < 41bp 0.662932682820183 0.876532922202192 0.10972062 0.96305466 prediction 0.427200478764019 Functional Gain - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111342486 chr12:111342488 nonsynonymous SNV 0.009 2 23 hm5C_associated_SNPs_122812 0 0 0 0 1 CCDC63 chr12:111342392 3'AG 111342392 Downstream 97bp
chr17 15902823 15902823 1 - G C rs200004394 15902824 - 15902804 15902844 41 AGAGCGCGCGAAGTACGGGACCGAGGTCGTGTGTGGCTGCG AGAGCGCGCGAAGTACGGGACGGAGGTCGTGTGTGGCTGCG < 41bp 0.667614623004316 0.8812138007827 0.40600514 0.6564324 prediction 0.427198355556766 Functional Gain - TTC19 ENSG00000011295;ENSG00000214941 CDS Human other chr17:15902824 chr17:15902823 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_122813 2 0 1 0 1 TTC19 chr17:15902820 5'GT 15902820 Upstream 4bp
chr2 100007020 100007020 1 + C T STAD 100007019 + 100006999 100007039 41 CCTTTTAGGTTAAAGCTCTCCCGGGGATGGGCACCACTATA CCTTTTAGGTTAAAGCTCTCCTGGGGATGGGCACCACTATA < 41bp 0.561086504237492 0.774683913631267 0.78954136 0.49978667 prediction 0.427194818787551 Functional Gain - EIF5B ENSG00000158417 CDS Human protein_coding chr2:100007019 chr2:100007020 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_122816 0 0 1 0 1 EIF5B chr2:100007007 3'AG 100007007 Downstream 14bp
chr10 82403816 82403816 1 + C A LUAD 82403815 + 82403795 82403835 41 GCGGACAGAGGGACAGCCCACCAGACTACCATCTGTTGTTT GCGGACAGAGGGACAGCCCACAAGACTACCATCTGTTGTTT < 41bp 0.452873901150057 0.713593286331934 0.2752108 0.29673442 prediction 0.427186572663868 Functional Gain - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82403815 chr10:82403816 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_122818 0 0 0 0 1 SH2D4B chr10:82403749 3'AG 82403749 Downstream 68bp
chr8 23112815 23112815 1 + C T SKCM 23112814 + 23112794 23112834 41 ACTCGCCCCTCTCCTCCCACCCCGTGGTGGCCCTGTCAGAG ACTCGCCCCTCTCCTCCCACCTCGTGGTGGCCCTGTCAGAG < 41bp 0.435792111629206 0.713580610516616 0.03635463 0.124037355 prediction 0.427161221033233 Functional Gain - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23112814 chr8:23112815 nonsynonymous SNV 0.963 3 22 hm5C_associated_SNPs_122823 0 0 1 0 1 CHMP7 chr8:23112760 3'AG 23112760 Downstream 56bp
chr17 27185829 27185829 1 + T C rs577237073 27185827 + 27185807 27185847 41 TCAGCCCTAAGCCAGGAGGACGTGAAAACACTAAAGGTCAG TCAGCCCTAAGCCAGGAGGACGCGAAAACACTAAAGGTCAG < 41bp 0.646007945236183 0.859586617948116 0.26777533 0.400505 prediction 0.427157345423865 Functional Gain - ERAL1 ENSG00000132591 CDS Human protein_coding chr17:27185827 chr17:27185829 nonsynonymous SNV 0.927 5 23 hm5C_associated_SNPs_122824 0 0 0 0 1 ERAL1 chr17:27185842 5'GT 27185842 Upstream 14bp
chr1 201860581 201860581 1 + C A UCS 201860580 + 201860560 201860600 41 GCAGCCAGTATACCCATACCCCCAGGACCCCAAAGCTGGCC GCAGCCAGTATACCCATACCCACAGGACCCCAAAGCTGGCC < 41bp 0.449527995279749 0.713567386646237 0.12310487 0.4270047 prediction 0.427134773292473 Functional Gain - SHISA4 ENSG00000198892 CDS Human protein_coding chr1:201860580 chr1:201860581 synonymous SNV . 0 22 hm5C_associated_SNPs_122827 0 0 0 0 1 SHISA4 chr1:201860529 3'AG 201860529 Downstream 53bp
chr1 28075619 28075619 1 + C T SKCM 28075618 + 28075598 28075638 41 TCTTCAATTCAAAATGAAATCCCAAAGAAAAAGTCCAAGTT TCTTCAATTCAAAATGAAATCTCAAAGAAAAAGTCCAAGTT < 41bp 0.449014990723563 0.713563435474989 0.117295355 0.24380776 prediction 0.427126870949978 Functional Gain - FAM76A ENSG00000009780 CDS Human protein_coding chr1:28075618 chr1:28075619 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_122829 0 0 1 0 2 FAM76A chr1:28075579 3'AG 28075579 Downstream 41bp
chr1 28075619 28075619 1 + C T SKCM 28075618 + 28075598 28075638 41 TCTTCAATTCAAAATGAAATCCCAAAGAAAAAGTCCAAGTT TCTTCAATTCAAAATGAAATCTCAAAGAAAAAGTCCAAGTT < 41bp 0.449014990723563 0.713563435474989 0.117295355 0.24380776 prediction 0.427126870949978 Functional Gain - FAM76A ENSG00000009780 CDS Human protein_coding chr1:28075618 chr1:28075619 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_122829 0 0 1 0 2 FAM76A chr1:28075665 5'GT 28075665 Upstream 47bp
chr16 19422056 19422056 1 + C A rs369600902 19422055 + 19422035 19422075 41 TGCTTCGGGCCAGGGTCGACCCGAGGGCCAGCGCAAGCAGC TGCTTCGGGCCAGGGTCGACCAGAGGGCCAGCGCAAGCAGC < 41bp 0.577259664506173 0.790816769309531 0.68156785 0.82828707 prediction 0.427114209606716 Functional Gain - TMC5 ENSG00000260681 ncRNA_exonic Human antisense chr16:19422055 chr16:19422056 . . 0 22 hm5C_associated_SNPs_122833 0 0 0 0 1 TMC5 chr16:19422095 5'GT 19422095 Upstream 40bp
chr10 82331305 82331305 1 + C T SKCM 82331304 + 82331284 82331324 41 GACCGCAAGGCTGCCAAAGTCCTGGAGGAACGCATCCACGA GACCGCAAGGCTGCCAAAGTCTTGGAGGAACGCATCCACGA < 41bp 0.609263589001788 0.822813665882388 0.27703875 0.18599313 prediction 0.427100153761199 Functional Gain - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82331304 chr10:82331305 synonymous SNV . 0 22 hm5C_associated_SNPs_122835 0 0 0 0 1 SH2D4B chr10:82331334 5'GT 82331334 Upstream 30bp
chr17 40704978 40704978 1 + C T GBM 40704977 + 40704957 40704997 41 CCGCACCGTGGTGCTCATCACCGGCTGTTCCTCGGGCATCG CCGCACCGTGGTGCTCATCACTGGCTGTTCCTCGGGCATCG < 41bp 0.533532854925695 0.74707819818754 0.8617413 0.48178536 prediction 0.42709068652369 Functional Gain - HSD17B1 ENSG00000108786 CDS Human protein_coding chr17:40704977 chr17:40704978 synonymous SNV . 0 22 hm5C_associated_SNPs_122836 0 0 0 0 1 HSD17B1 chr17:40705048 5'GT 40705048 Upstream 71bp
chr11 76572065 76572065 1 + C G rs138662843 76572061 + 76572041 76572081 41 AGAGGGCTACTGGGGCCCCACGACCTCCACGCTGGACTGGT AGAGGGCTACTGGGGCCCCACGACGTCCACGCTGGACTGGT < 41bp 0.431085528712416 0.713541476488015 0.23585016 0.81137526 prediction 0.42708295297603 Functional Gain - ACER3 ENSG00000078124 CDS Human protein_coding chr11:76572061 chr11:76572065 synonymous SNV . 0 25 hm5C_associated_SNPs_122837 0 0 1 0 2 ACER3 chr11:76572106 5'GT 76572106 Upstream 42bp
chr11 76572065 76572065 1 + C G rs138662843 76572061 + 76572041 76572081 41 AGAGGGCTACTGGGGCCCCACGACCTCCACGCTGGACTGGT AGAGGGCTACTGGGGCCCCACGACGTCCACGCTGGACTGGT < 41bp 0.431085528712416 0.713541476488015 0.23585016 0.81137526 prediction 0.42708295297603 Functional Gain - ACER3 ENSG00000078124 CDS Human protein_coding chr11:76572061 chr11:76572065 synonymous SNV . 0 25 hm5C_associated_SNPs_122837 0 0 1 0 2 ACER3 chr11:76572123 5'GT 76572123 Upstream 59bp
chrX 51637831 51637831 1 + C T LUSC 51637830 + 51637810 51637850 41 GACCCCCCTTATTCTCAACTCCGCGATCCGCCTGCCGTCCT GACCCCCCTTATTCTCAACTCTGCGATCCGCCTGCCGTCCT < 41bp 0.570008000736314 0.783548891303899 0.12991178 0.050831705 prediction 0.427081781135169 Functional Gain - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51637830 chrX:51637831 nonsynonymous SNV 0.199 1 22 hm5C_associated_SNPs_122838 0 0 1 0 1 MAGED1 chrX:51637890 5'GT 51637890 Upstream 60bp
chrX 69674164 69674164 1 + A G UCEC 69674161 + 69674141 69674181 41 CATTGTGGCCCAGTACAGACCTGAAGGTAGGAGAAGGGAAG CATTGTGGCCCAGTACAGACCTGGAGGTAGGAGAAGGGAAG < 41bp 0.579978459715117 0.793515396572363 0.078558564 0.23372391 prediction 0.427073873714493 Functional Gain - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69674161 chrX:69674164 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_122841 0 0 0 0 1 DLG3 chrX:69674166 5'GT 69674166 Upstream 3bp
chr13 32365986 32365986 1 + C T UCEC 32365985 + 32365965 32366005 41 TGCTCCTATGCTCCCCATGTCCGAATATGTATGCCCTTGAC TGCTCCTATGCTCCCCATGTCTGAATATGTATGCCCTTGAC < 41bp 0.457522845448216 0.713536375235729 0.25653058 0.19376707 prediction 0.427072750471457 Functional Gain - RXFP2 ENSG00000133105 CDS Human protein_coding chr13:32365985 chr13:32365986 stopgain 1.000 1 22 hm5C_associated_SNPs_122842 0 0 0 0 1 RXFP2 chr13:32365943 3'AG 32365943 Downstream 44bp
chr19 10822955 10822955 1 + C T SKCM 10822954 + 10822934 10822974 41 TCGGCTGCCGAAGGACAAGCCCCGATATCTGATGGGGGTTG TCGGCTGCCGAAGGACAAGCCTCGATATCTGATGGGGGTTG < 41bp 0.615968482424783 0.829503147192589 0.32132214 0.8948135 prediction 0.427069329535612 Functional Gain - QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10822954 chr19:10822955 synonymous SNV . 0 22 hm5C_associated_SNPs_122843 0 0 1 0 1 QTRT1 chr19:10822975 5'GT 10822975 Upstream 21bp
chr12 6638758 6638758 1 + C A THCA 6638757 + 6638737 6638777 41 TGTCAGCGGTTCCGCACATCCCGGTATGCTGCCCTCCCTGA TGTCAGCGGTTCCGCACATCCAGGTATGCTGCCCTCCCTGA < 41bp 0.629389819168929 0.842919832910606 0.58096766 0.88195807 prediction 0.427060027483354 Functional Gain - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6638757 chr12:6638758 synonymous SNV . 0 22 hm5C_associated_SNPs_122845 0 0 1 0 2 NCAPD2 chr12:6638679 3'AG 6638679 Downstream 80bp
chr12 6638758 6638758 1 + C A THCA 6638757 + 6638737 6638777 41 TGTCAGCGGTTCCGCACATCCCGGTATGCTGCCCTCCCTGA TGTCAGCGGTTCCGCACATCCAGGTATGCTGCCCTCCCTGA < 41bp 0.629389819168929 0.842919832910606 0.58096766 0.88195807 prediction 0.427060027483354 Functional Gain - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6638757 chr12:6638758 synonymous SNV . 0 22 hm5C_associated_SNPs_122845 0 0 1 0 2 NCAPD2 chr12:6638759 5'GT 6638759 Upstream 2bp
chr11 125617637 125617637 1 + C T GBM 125617636 + 125617616 125617656 41 GGATGTGCCACCTCCAGTTCCCAGGAGAAAAGTGCTCCAGA GGATGTGCCACCTCCAGTTCCTAGGAGAAAAGTGCTCCAGA < 41bp 0.472496028843144 0.71352852273453 0.8964266 0.6486315 prediction 0.42705704546906 Functional Gain - PATE1 ENSG00000171053 CDS Human protein_coding chr11:125617636 chr11:125617637 nonsynonymous SNV 0.770 3 22 hm5C_associated_SNPs_122846 0 0 0 0 2 PATE1 chr11:125617595 3'AG 125617595 Downstream 43bp
chr11 125617637 125617637 1 + C T GBM 125617636 + 125617616 125617656 41 GGATGTGCCACCTCCAGTTCCCAGGAGAAAAGTGCTCCAGA GGATGTGCCACCTCCAGTTCCTAGGAGAAAAGTGCTCCAGA < 41bp 0.472496028843144 0.71352852273453 0.8964266 0.6486315 prediction 0.42705704546906 Functional Gain - PATE1 ENSG00000171053 CDS Human protein_coding chr11:125617636 chr11:125617637 nonsynonymous SNV 0.770 3 22 hm5C_associated_SNPs_122846 0 0 0 0 2 PATE1 chr11:125617717 5'GT 125617717 Upstream 81bp
chr11 66190662 66190662 1 + C A LUAD 66190658 + 66190638 66190678 41 AATCATGGTATGGACTGCTGCACCCCGAGGACCTGGCCCAC AATCATGGTATGGACTGCTGCACCACGAGGACCTGGCCCAC < 41bp 0.283683853605067 0.713526082337226 0.03619039 0.042134017 prediction 0.427052164674452 Functional Gain - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66190658 chr11:66190662 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_122847 0 0 0 0 1 NPAS4 chr11:66190703 5'GT 66190703 Upstream 42bp
chr11 94040636 94040636 1 + T G rs76779571 94040634 + 94040614 94040654 41 CCCAGTGCCTCCCTTTCTCCCATTACTTCCCCACCCCAGCT CCCAGTGCCTCCCTTTCTCCCAGTACTTCCCCACCCCAGCT < 41bp 0.355001605988136 0.713524224054262 0.13821086 0.37187642 prediction 0.427048448108525 Functional Gain - IZUMO1R ENSG00000183560 CDS Human protein_coding chr11:94040634 chr11:94040636 nonsynonymous SNV 0.010 0 23 hm5C_associated_SNPs_122849 0 0 0 0 1 IZUMO1R chr11:94040590 3'AG 94040590 Downstream 47bp
chr19 55019139 55019139 1 + C T rs543011776 55019138 + 55019118 55019158 41 GACCCTCCATCTCGGCTGAGCCAGGCACTGTGATCTCCCCG GACCCTCCATCTCGGCTGAGCTAGGCACTGTGATCTCCCCG < 41bp 0.497726596315482 0.71351877493182 0.47022143 0.19275162 prediction 0.427037549863641 Functional Gain - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019138 chr19:55019139 nonsynonymous SNV 0.011 3 22 hm5C_associated_SNPs_122851 0 0 0 3 1 LAIR2 chr19:55019106 3'AG 55019106 Downstream 34bp
chr16 77850871 77850871 1 + C A LUAD 77850870 + 77850850 77850890 41 AAGGGAATATTGACAACCCTCCCAAGACTCCCCTGGTGCCA AAGGGAATATTGACAACCCTCACAAGACTCCCCTGGTGCCA < 41bp 0.446363120724938 0.713513368537798 0.307798 0.41362995 prediction 0.427026737075597 Functional Gain - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77850870 chr16:77850871 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_122852 0 0 0 0 2 VAT1L chr16:77850818 3'AG 77850818 Downstream 54bp
chr16 77850871 77850871 1 + C A LUAD 77850870 + 77850850 77850890 41 AAGGGAATATTGACAACCCTCCCAAGACTCCCCTGGTGCCA AAGGGAATATTGACAACCCTCACAAGACTCCCCTGGTGCCA < 41bp 0.446363120724938 0.713513368537798 0.307798 0.41362995 prediction 0.427026737075597 Functional Gain - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77850870 chr16:77850871 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_122852 0 0 0 0 2 VAT1L chr16:77850947 5'GT 77850947 Upstream 77bp
chr15 72105912 72105912 1 + C T COAD 72105911 + 72105891 72105931 41 CAGGAAACTATCTCTCGGTTCCGGGCATTGGCGGTGGACCC CAGGAAACTATCTCTCGGTTCTGGGCATTGGCGGTGGACCC < 41bp 0.507453148653641 0.720963234929837 0.7477639 0.38970587 prediction 0.427020172552392 Functional Gain - NR2E3 ENSG00000031544 ncRNA_exonic Human other chr15:72105911 chr15:72105912 . 0.478 1 22 hm5C_associated_SNPs_122853 1 0 0 0 1 NR2E3 chr15:72105976 5'GT 72105976 Upstream 65bp
chr10 46998898 46998898 1 + C T COAD 46998897 + 46998877 46998917 41 AGCCATGAGCTCCAGCCGCCCCGAGCCGGGTCCCTGGGCAC AGCCATGAGCTCCAGCCGCCCTGAGCCGGGTCCCTGGGCAC < 41bp 0.516888855367831 0.730398194499834 0.26011044 0.2670899 prediction 0.427018678264006 Functional Gain - GPRIN2 ENSG00000204175 CDS Human protein_coding chr10:46998897 chr10:46998898 synonymous SNV . 0 22 hm5C_associated_SNPs_122854 0 0 0 0 1 GPRIN2 chr10:46998875 3'AG 46998875 Downstream 24bp
chr18 19209067 19209067 1 + C T STAD 19209066 + 19209046 19209086 41 GGAAGAGGAAGAGGACGTGGCCGTGGCAGAGGAAGAGGGGG GGAAGAGGAAGAGGACGTGGCTGTGGCAGAGGAAGAGGGGG < 41bp 0.519796009839254 0.73330073747071 0.33369938 0.26073653 prediction 0.427009455262913 Functional Gain - SNRPD1 ENSG00000167088 CDS Human protein_coding chr18:19209066 chr18:19209067 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_122856 0 0 1 0 1 SNRPD1 chr18:19209023 3'AG 19209023 Downstream 45bp
chr8 145161278 145161278 1 + A G COAD 145161275 + 145161255 145161295 41 GCAGTCAACTGCAGTCTGTTCTCAGCTGTGCGGGAGGACTT GCAGTCAACTGCAGTCTGTTCTCGGCTGTGCGGGAGGACTT < 41bp 0.589365220134192 0.802869773495947 0.09340677 0.15071857 prediction 0.427009106723511 Functional Gain - MAF1 ENSG00000179632 CDS Human protein_coding chr8:145161275 chr8:145161278 synonymous SNV . 0 24 hm5C_associated_SNPs_122857 0 0 1 0 2 MAF1 chr8:145161246 3'AG 145161246 Downstream 33bp
chr8 145161278 145161278 1 + A G COAD 145161275 + 145161255 145161295 41 GCAGTCAACTGCAGTCTGTTCTCAGCTGTGCGGGAGGACTT GCAGTCAACTGCAGTCTGTTCTCGGCTGTGCGGGAGGACTT < 41bp 0.589365220134192 0.802869773495947 0.09340677 0.15071857 prediction 0.427009106723511 Functional Gain - MAF1 ENSG00000179632 CDS Human protein_coding chr8:145161275 chr8:145161278 synonymous SNV . 0 24 hm5C_associated_SNPs_122857 0 0 1 0 2 MAF1 chr8:145161367 5'GT 145161367 Upstream 90bp
chr6 125995549 125995549 1 + T C rs2211420 125995547 + 125995527 125995567 41 ATAAGTACAACACCCTACTTCTTGGATACAGAGCCATCGCG ATAAGTACAACACCCTACTTCTCGGATACAGAGCCATCGCG < 41bp 0.520908119684497 0.734411678763295 0.04161796 0.06963119 prediction 0.427007118157596 Functional Gain - LINC02523 ENSG00000224506 ncRNA_exonic Human lincRNA chr6:125995547 chr6:125995549 . . 0 23 hm5C_associated_SNPs_122858 0 0 0 0 1 LINC02523 chr6:125995621 5'GT 125995621 Upstream 73bp
chrX 52657343 52657343 1 + C T rs782252755 52657342 + 52657322 52657362 41 GCAGGCTCCAGAGAATCATCCCGAAGGTGAGTACCTCTCAA GCAGGCTCCAGAGAATCATCCTGAAGGTGAGTACCTCTCAA < 41bp 0.562541060177483 0.776040638353758 0.16857058 0.24128693 prediction 0.426999156352551 Functional Gain - SSX8 ENSG00000157965 ncRNA_exonic Human unprocessed_pseudogene chrX:52657342 chrX:52657343 . . 0 22 hm5C_associated_SNPs_122861 0 0 0 0 2 SSX8 chrX:52657298 3'AG 52657298 Downstream 46bp
chrX 52657343 52657343 1 + C T rs782252755 52657342 + 52657322 52657362 41 GCAGGCTCCAGAGAATCATCCCGAAGGTGAGTACCTCTCAA GCAGGCTCCAGAGAATCATCCTGAAGGTGAGTACCTCTCAA < 41bp 0.562541060177483 0.776040638353758 0.16857058 0.24128693 prediction 0.426999156352551 Functional Gain - SSX8 ENSG00000157965 ncRNA_exonic Human unprocessed_pseudogene chrX:52657342 chrX:52657343 . . 0 22 hm5C_associated_SNPs_122861 0 0 0 0 2 SSX8 chrX:52657347 5'GT 52657347 Upstream 5bp
chr20 58342263 58342263 1 + T C UCEC 58342260 + 58342240 58342280 41 GCCAAGATGCCTTCTGCATCCAGTGGTGAAGAAGCAGACGC GCCAAGATGCCTTCTGCATCCAGCGGTGAAGAAGCAGACGC < 41bp 0.507355514287565 0.720854088115647 0.21386966 0.31965232 prediction 0.426997147656164 Functional Gain - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58342260 chr20:58342263 synonymous SNV . 0 24 hm5C_associated_SNPs_122863 0 0 0 0 1 PHACTR3 chr20:58342241 3'AG 58342241 Downstream 23bp
chr19 14184611 14184611 1 + C A rs142911990 14184607 + 14184587 14184627 41 CAGGAGGTGCGCGCCGTGCGCGAGCGCGAGCAGGAACTGCA CAGGAGGTGCGCGCCGTGCGCGAGAGCGAGCAGGAACTGCA < 41bp 0.710046454218887 0.923543177486621 0.87303543 0.89427865 prediction 0.426993446535467 Functional Gain - MISP3 ENSG00000141854 CDS Human protein_coding chr19:14184607 chr19:14184611 nonsynonymous SNV 0.990 2 25 hm5C_associated_SNPs_122865 0 0 1 0 1 MISP3 chr19:14184689 5'GT 14184689 Upstream 79bp
chr9 72000820 72000820 1 + C T SKCM 72000819 + 72000799 72000839 41 AGCCCTCCCACCCTTGAGGACCAGGTCGAAGAGTGACCCTG AGCCCTCCCACCCTTGAGGACTAGGTCGAAGAGTGACCCTG < 41bp 0.459024078536022 0.713491188643394 0.08067706 0.057287514 prediction 0.426982377286787 Functional Gain - FAM189A2 ENSG00000135063 CDS Human protein_coding chr9:72000819 chr9:72000820 synonymous SNV . 0 22 hm5C_associated_SNPs_122868 0 0 0 0 1 FAM189A2 chr9:72000863 5'GT 72000863 Upstream 44bp
chr18 28968846 28968846 1 + C T UCEC 28968845 + 28968825 28968865 41 AATTTTCCACAGATCTATTGCCGGGCTCTGAATTCACGGGG AATTTTCCACAGATCTATTGCTGGGCTCTGAATTCACGGGG < 41bp 0.490200702537565 0.713489444629127 0.9197619 0.5653094 prediction 0.426978889258254 Functional Gain - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28968845 chr18:28968846 nonsynonymous SNV 0.976 2 22 hm5C_associated_SNPs_122869 0 0 0 0 1 DSG4 chr18:28968837 3'AG 28968837 Downstream 10bp
chr15 41523643 41523643 1 + C A ACC 41523642 + 41523622 41523662 41 CGAGGAGATCAAGAAGGAGACCGGCTGTGAGTTCGGGTTGG CGAGGAGATCAAGAAGGAGACAGGCTGTGAGTTCGGGTTGG < 41bp 0.604849394608573 0.818332178410039 0.76554894 0.7146565 prediction 0.426965567602933 Functional Gain - CHP1 ENSG00000187446 CDS Human protein_coding chr15:41523642 chr15:41523643 synonymous SNV . 0 22 hm5C_associated_SNPs_122871 0 0 1 0 1 CHP1 chr15:41523647 5'GT 41523647 Upstream 5bp
chr3 14711556 14711556 1 + T C THYM 14711554 + 14711534 14711574 41 AGGAGAGGAAGGACACCAAGCCTGGAGTGCCACACATCCGG AGGAGAGGAAGGACACCAAGCCCGGAGTGCCACACATCCGG < 41bp 0.436172491960564 0.713480873084525 0.39297605 0.733662 prediction 0.42696174616905 Functional Gain - CCDC174 ENSG00000154781 CDS Human protein_coding chr3:14711554 chr3:14711556 synonymous SNV . 0 23 hm5C_associated_SNPs_122872 0 0 1 0 1 CCDC174 chr3:14711593 5'GT 14711593 Upstream 38bp
chr16 11017815 11017815 1 + T C rs45617532 11017813 + 11017793 11017833 41 CTCTTCTCCAGGCTGTATCCCATGAGCCTCAGCATCCTGGC CTCTTCTCCAGGCTGTATCCCACGAGCCTCAGCATCCTGGC < 41bp 0.595068942193772 0.808533292095037 0.06351361 0.110672414 prediction 0.426928699802529 Functional Gain - CIITA ENSG00000179583 UTR3 Human protein_coding chr16:11017813 chr16:11017815 . . 0 23 hm5C_associated_SNPs_122877 1 0 0 0 1 CIITA chr16:11017735 3'AG 11017735 Downstream 81bp
chr10 85901294 85901294 1 + C G SKCM 85901290 + 85901270 85901310 41 GGCTGGTGTGTCTCCGGACACTACCTTCTAGGGTTTTCCAC GGCTGGTGTGTCTCCGGACACTACGTTCTAGGGTTTTCCAC < 41bp 0.656593705503896 0.87005451033685 0.040942192 0.040046364 prediction 0.426921609665907 Functional Gain - GHITM ENSG00000165678 CDS Human protein_coding chr10:85901290 chr10:85901294 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_122878 0 0 1 0 1 GHITM chr10:85901218 3'AG 85901218 Downstream 77bp
chr11 44265763 44265763 1 + C T LUAD 44265762 + 44265742 44265782 41 CCTCTCAAGGTGGTGGAACACCGAGCTGACCCTGTCCTGTA CCTCTCAAGGTGGTGGAACACTGAGCTGACCCTGTCCTGTA < 41bp 0.579838099860861 0.793296302668757 0.6871277 0.5230567 prediction 0.426916405615792 Functional Gain - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44265762 chr11:44265763 stopgain 0.629 1 22 hm5C_associated_SNPs_122879 0 0 1 0 1 EXT2 chr11:44265699 3'AG 44265699 Downstream 65bp
chr9 135919312 135919312 1 + C T UCEC 135919311 + 135919291 135919331 41 TACCGACCAGAGACCCAGCACCGGTAAGGCCCCCCTCCATG TACCGACCAGAGACCCAGCACTGGTAAGGCCCCCCTCCATG < 41bp 0.463689542625105 0.713439311122499 0.16044202 0.18761086 prediction 0.426878622244998 Functional Gain - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919311 chr9:135919312 nonsynonymous SNV 0.968 3 22 hm5C_associated_SNPs_122884 0 0 1 0 1 GTF3C5 chr9:135919313 5'GT 135919313 Upstream 2bp
chr12 53681845 53681845 1 + C T SKCM 53681844 + 53681824 53681864 41 TAAGAGACGGGGCACTGCTTCCCGGGGCCGGGGGCGAGCAA TAAGAGACGGGGCACTGCTTCTCGGGGCCGGGGGCGAGCAA < 41bp 0.613995125545213 0.827431986738771 0.87573826 0.88391894 prediction 0.426873722387116 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53681844 chr12:53681845 synonymous SNV . 0 22 hm5C_associated_SNPs_122887 0 0 1 0 1 ESPL1 chr12:53681756 3'AG 53681756 Downstream 90bp
chr3 12851735 12851735 1 + C T rs62637646 12851734 + 12851714 12851754 41 CCACCTACTGGACCGGCTGCCCGGCCCGCGGGTGCCCACCA CCACCTACTGGACCGGCTGCCTGGCCCGCGGGTGCCCACCA < 41bp 0.473696863841918 0.713435108080236 0.11927903 0.15479669 prediction 0.426870216160472 Functional Gain - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12851734 chr3:12851735 synonymous SNV . 0 22 hm5C_associated_SNPs_122888 0 0 0 0 1 CAND2 chr3:12851823 5'GT 12851823 Upstream 89bp
chr6 167728715 167728715 1 + C A rs7739457 167728711 + 167728691 167728731 41 GTTTGAGAAGAGCAAGGAAGCTGCCTTCGCCAATTACCGCC GTTTGAGAAGAGCAAGGAAGCTGCATTCGCCAATTACCGCC < 41bp 0.726471104310497 0.939899615233971 0.5663682 0.57300514 prediction 0.426857021846947 Functional Gain - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167728711 chr6:167728715 synonymous SNV . 0 25 hm5C_associated_SNPs_122891 0 0 0 0 1 UNC93A chr6:167728675 3'AG 167728675 Downstream 41bp
chr19 13873196 13873196 1 + C T SKCM 13873195 + 13873175 13873215 41 CCTGACCATCCCGCTGGTGCCCGAGACGGAAGATGACCGCA CCTGACCATCCCGCTGGTGCCTGAGACGGAAGATGACCGCA < 41bp 0.465450710062104 0.713419810194644 0.4614414 0.75384915 prediction 0.426839620389288 Functional Gain - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13873195 chr19:13873196 synonymous SNV . 0 22 hm5C_associated_SNPs_122898 0 0 1 0 2 CCDC130 chr19:13873113 3'AG 13873113 Downstream 84bp
chr19 13873196 13873196 1 + C T SKCM 13873195 + 13873175 13873215 41 CCTGACCATCCCGCTGGTGCCCGAGACGGAAGATGACCGCA CCTGACCATCCCGCTGGTGCCTGAGACGGAAGATGACCGCA < 41bp 0.465450710062104 0.713419810194644 0.4614414 0.75384915 prediction 0.426839620389288 Functional Gain - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13873195 chr19:13873196 synonymous SNV . 0 22 hm5C_associated_SNPs_122898 0 0 1 0 2 CCDC130 chr19:13873251 5'GT 13873251 Upstream 56bp
chr21 45860766 45860766 1 + T G rs142151549 45860764 + 45860744 45860784 41 CACTTCCAGGACCAGAATGACGTGGAGCTGAACAGGCTGAA CACTTCCAGGACCAGAATGACGGGGAGCTGAACAGGCTGAA < 41bp 0.366122554606441 0.713417313106335 0.6027849 0.9010358 prediction 0.426834626212669 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45860764 chr21:45860766 nonsynonymous SNV 0.062 2 23 hm5C_associated_SNPs_122899 0 0 0 0 2 TRPM2 chr21:45860672 3'AG 45860672 Downstream 95bp
chr21 45860766 45860766 1 + T G rs142151549 45860764 + 45860744 45860784 41 CACTTCCAGGACCAGAATGACGTGGAGCTGAACAGGCTGAA CACTTCCAGGACCAGAATGACGGGGAGCTGAACAGGCTGAA < 41bp 0.366122554606441 0.713417313106335 0.6027849 0.9010358 prediction 0.426834626212669 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45860764 chr21:45860766 nonsynonymous SNV 0.062 2 23 hm5C_associated_SNPs_122899 0 0 0 0 2 TRPM2 chr21:45860788 5'GT 45860788 Upstream 23bp
chr1 111826841 111826841 1 + C G UCEC 111826840 + 111826820 111826860 41 TGGCCCTGCTGGACCCTATACCAGGCAGTCTGGGTTCTGGG TGGCCCTGCTGGACCCTATACGAGGCAGTCTGGGTTCTGGG < 41bp 0.412525128254192 0.713414088905835 0.3359082 0.3749407 prediction 0.42682817781167 Functional Gain - CHIAP2 ENSG00000203878 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:111826840 chr1:111826841 . . 0 22 hm5C_associated_SNPs_122901 0 0 0 0 1 CHIAP2 chr1:111826871 5'GT 111826871 Upstream 31bp
chr1 41284214 41284214 1 + C T UCEC 41284213 + 41284193 41284233 41 GGCCTCGGTGGCCGTCATCGCCGCGGGTACCCAGGGCAACA GGCCTCGGTGGCCGTCATCGCTGCGGGTACCCAGGGCAACA < 41bp 0.580064729214911 0.793478345876863 0.90907866 0.76717544 prediction 0.426827233323904 Functional Gain - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41284213 chr1:41284214 synonymous SNV . 0 22 hm5C_associated_SNPs_122902 0 0 1 0 1 KCNQ4 chr1:41284177 3'AG 41284177 Downstream 38bp
chr22 44528870 44528870 1 + T C UCEC 44528867 + 44528847 44528887 41 CCGCCTTCCTGAGCATGTAACGGTGCAGGTGGTGGTCGTGC CCGCCTTCCTGAGCATGTAACGGCGCAGGTGGTGGTCGTGC < 41bp 0.498693196602287 0.71341162666316 0.43504226 0.90702856 prediction 0.426823253326319 Functional Gain - PARVB ENSG00000188677 CDS Human protein_coding chr22:44528867 chr22:44528870 nonsynonymous SNV 0.816 1 24 hm5C_associated_SNPs_122903 0 0 0 0 2 PARVB chr22:44528774 3'AG 44528774 Downstream 97bp
chr22 44528870 44528870 1 + T C UCEC 44528867 + 44528847 44528887 41 CCGCCTTCCTGAGCATGTAACGGTGCAGGTGGTGGTCGTGC CCGCCTTCCTGAGCATGTAACGGCGCAGGTGGTGGTCGTGC < 41bp 0.498693196602287 0.71341162666316 0.43504226 0.90702856 prediction 0.426823253326319 Functional Gain - PARVB ENSG00000188677 CDS Human protein_coding chr22:44528867 chr22:44528870 nonsynonymous SNV 0.816 1 24 hm5C_associated_SNPs_122903 0 0 0 0 2 PARVB chr22:44528889 5'GT 44528889 Upstream 20bp
chr17 78059886 78059886 1 + C T SKCM 78059885 + 78059865 78059905 41 GATGGCAAGGCGGTCCAGGCCCAGGTGACCTGGCTGCGCCT GATGGCAAGGCGGTCCAGGCCTAGGTGACCTGGCTGCGCCT < 41bp 0.596781755765965 0.810188284012644 0.90256894 0.86048996 prediction 0.426813056493356 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78059885 chr17:78059886 stopgain 0.832 0 22 hm5C_associated_SNPs_122905 0 0 0 0 1 CCDC40 chr17:78059802 3'AG 78059802 Downstream 85bp
chr2 208576715 208576715 1 + T G rs117854837 208576713 + 208576693 208576733 41 GAGCTGTACTGCGCGTCCGACATCTACGAGGCGGTGTCCGG GAGCTGTACTGCGCGTCCGACAGCTACGAGGCGGTGTCCGG < 41bp 0.351289224852223 0.713405113363937 0.32571933 0.8679106 prediction 0.426810226727875 Functional Gain - CCNYL1 ENSG00000163249 CDS Human protein_coding chr2:208576713 chr2:208576715 nonsynonymous SNV 0.930 0 23 hm5C_associated_SNPs_122906 0 0 0 0 1 CCNYL1 chr2:208576662 3'AG 208576662 Downstream 54bp
chr15 42127377 42127377 1 + T G rs143398561 42127373 + 42127353 42127393 41 TGCCCAGCGAGCTGCCCCAGCTGCTGCCTGATCTGGAATCC TGCCCAGCGAGCTGCCCCAGCTGCGGCCTGATCTGGAATCC < 41bp 0.504195041799567 0.717597998076259 0.4013881 0.54904467 prediction 0.426805912553385 Functional Gain - JMJD7;JMJD7-PLA2G4B ENSG00000168970;ENSG00000243708;ENSG00000243789 CDS Human other chr15:42127373 chr15:42127377 nonsynonymous SNV 0.973 2 25 hm5C_associated_SNPs_122909 0 0 1 0 1 JMJD7;JMJD7-PLA2G4B chr15:42127421 5'GT 42127421 Upstream 45bp
chr9 133364742 133364742 1 + C A GBM 133364738 + 133364718 133364758 41 AGGTATCTACGAGACCCCAGCAGGCACCATCCTTTACCATG AGGTATCTACGAGACCCCAGCAGGAACCATCCTTTACCATG < 41bp 0.299797894832781 0.713398098742653 0.17327702 0.11956394 prediction 0.426796197485307 Functional Gain - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133364738 chr9:133364742 synonymous SNV . 0 25 hm5C_associated_SNPs_122910 0 0 0 0 1 ASS1 chr9:133364720 3'AG 133364720 Downstream 23bp
chr16 334453 334453 1 + C G LUAD 334449 + 334429 334469 41 ACAGCAAGGCAGCTGCCGTGCTCGCGGCCGAGTCAATGGTG ACAGCAAGGCAGCTGCCGTGCTCGGGGCCGAGTCAATGGTG < 41bp 0.654265560128342 0.867663248820508 0.0938395 0.12330437 prediction 0.426795377384332 Functional Gain - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:334449 chr16:334453 nonsynonymous SNV 0.075 1 25 hm5C_associated_SNPs_122911 0 0 1 0 1 PDIA2 chr16:334387 3'AG 334387 Downstream 67bp
chr15 89020250 89020250 1 + C T UCEC 89020249 + 89020229 89020269 41 CAAAAGGGCGTGATCCACATCCGAGTTGTGGTGAAAGGCCT CAAAAGGGCGTGATCCACATCTGAGTTGTGGTGAAAGGCCT < 41bp 0.46681412673519 0.71339735905349 0.35410285 0.3287965 prediction 0.42679471810698 Functional Gain - MRPS11 ENSG00000181991 CDS Human protein_coding chr15:89020249 chr15:89020250 stopgain 0.948 1 22 hm5C_associated_SNPs_122912 0 0 1 1 2 MRPS11 chr15:89020220 3'AG 89020220 Downstream 31bp
chr15 89020250 89020250 1 + C T UCEC 89020249 + 89020229 89020269 41 CAAAAGGGCGTGATCCACATCCGAGTTGTGGTGAAAGGCCT CAAAAGGGCGTGATCCACATCTGAGTTGTGGTGAAAGGCCT < 41bp 0.46681412673519 0.71339735905349 0.35410285 0.3287965 prediction 0.42679471810698 Functional Gain - MRPS11 ENSG00000181991 CDS Human protein_coding chr15:89020249 chr15:89020250 stopgain 0.948 1 22 hm5C_associated_SNPs_122912 0 0 1 1 2 MRPS11 chr15:89020285 5'GT 89020285 Upstream 36bp
chr16 68862157 68862157 1 + C T STAD 68862156 + 68862136 68862176 41 CTGCCCCCAGAGGATGACACCCGGGACAACGTTTATTACTA CTGCCCCCAGAGGATGACACCTGGGACAACGTTTATTACTA < 41bp 0.454247400957697 0.713394064002979 0.37729827 0.40911657 prediction 0.426788128005958 Functional Gain - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68862156 chr16:68862157 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_122914 1 0 1 0 2 CDH1 chr16:68862077 3'AG 68862077 Downstream 81bp
chr16 68862157 68862157 1 + C T STAD 68862156 + 68862136 68862176 41 CTGCCCCCAGAGGATGACACCCGGGACAACGTTTATTACTA CTGCCCCCAGAGGATGACACCTGGGACAACGTTTATTACTA < 41bp 0.454247400957697 0.713394064002979 0.37729827 0.40911657 prediction 0.426788128005958 Functional Gain - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68862156 chr16:68862157 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_122914 1 0 1 0 2 CDH1 chr16:68862207 5'GT 68862207 Upstream 51bp
chr17 57430801 57430801 1 + C T SKCM 57430800 + 57430780 57430820 41 ATGACAAGATCGAAGACTTTCCAGGCATATCTGCCCTCCTG ATGACAAGATCGAAGACTTTCTAGGCATATCTGCCCTCCTG < 41bp 0.593281106098054 0.806670222057217 0.39032984 0.308079 prediction 0.426778231918326 Functional Gain - YPEL2 ENSG00000175155 CDS Human protein_coding chr17:57430800 chr17:57430801 stopgain 1.000 1 22 hm5C_associated_SNPs_122916 0 0 1 0 1 YPEL2 chr17:57430887 5'GT 57430887 Upstream 87bp
chr2 71163161 71163161 1 + T C UCEC 71163159 + 71163139 71163179 41 CTAGGTGCAGCCCGAGAACACATGCAGGCGGTCACCCGAAA CTAGGTGCAGCCCGAGAACACACGCAGGCGGTCACCCGAAA < 41bp 0.470598982790336 0.713387325109211 0.22952166 0.1010786 prediction 0.426774650218422 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71163159 chr2:71163161 nonsynonymous SNV 0.857 1 23 hm5C_associated_SNPs_122918 1 0 0 0 1 ATP6V1B1 chr2:71163202 5'GT 71163202 Upstream 42bp
chr16 3077243 3077243 1 + C T SKCM 3077242 + 3077222 3077262 41 CCCACCACCATCTTCCCCATCCGGGCGCCACAGAAGCACGT CCCACCACCATCTTCCCCATCTGGGCGCCACAGAAGCACGT < 41bp 0.609785254933412 0.823171874231121 0.93705034 0.7736403 prediction 0.426773238595417 Functional Gain - THOC6 ENSG00000131652 CDS Human protein_coding chr16:3077242 chr16:3077243 nonsynonymous SNV 0.031 0 22 hm5C_associated_SNPs_122919 0 0 1 0 2 THOC6 chr16:3077171 3'AG 3077171 Downstream 73bp
chr16 3077243 3077243 1 + C T SKCM 3077242 + 3077222 3077262 41 CCCACCACCATCTTCCCCATCCGGGCGCCACAGAAGCACGT CCCACCACCATCTTCCCCATCTGGGCGCCACAGAAGCACGT < 41bp 0.609785254933412 0.823171874231121 0.93705034 0.7736403 prediction 0.426773238595417 Functional Gain - THOC6 ENSG00000131652 CDS Human protein_coding chr16:3077242 chr16:3077243 nonsynonymous SNV 0.031 0 22 hm5C_associated_SNPs_122919 0 0 1 0 2 THOC6 chr16:3077281 5'GT 3077281 Upstream 39bp
chr1 205561373 205561373 1 + C T LIHC 205561372 + 205561352 205561392 41 CTGTTTCTCAGCAGCACCTTCCCCAGCATGCTGGCCTACAC CTGTTTCTCAGCAGCACCTTCTCCAGCATGCTGGCCTACAC < 41bp 0.650834351517632 0.864220001400023 0.16282254 0.9505105 prediction 0.426771299764781 Functional Gain - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561372 chr1:205561373 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_122920 0 0 0 1 1 MFSD4A chr1:205561415 5'GT 205561415 Upstream 43bp
chr8 63659580 63659580 1 + C G LUAD 63659576 + 63659556 63659596 41 TTGTGTCAGAAGAGTGCTGCCTCCCTCAGCCCATGGCATGA TTGTGTCAGAAGAGTGCTGCCTCCGTCAGCCCATGGCATGA < 41bp 0.474597236794481 0.713382599332803 0.050663352 0.08430755 prediction 0.426765198665607 Functional Gain - NKAIN3 ENSG00000185942 CDS Human protein_coding chr8:63659576 chr8:63659580 synonymous SNV . 0 25 hm5C_associated_SNPs_122923 0 0 0 0 1 NKAIN3 chr8:63659491 3'AG 63659491 Downstream 90bp
chr11 1086417 1086417 1 + C A LUAD 1086413 + 1086393 1086433 41 CGAGCCCTGCAGCCTGAACCCGCACCGCCGCTCCTGGGCCG CGAGCCCTGCAGCCTGAACCCGCAACGCCGCTCCTGGGCCG < 41bp 0.304471644987207 0.713378821129011 0.33757472 0.4084835 prediction 0.426757642258022 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1086413 chr11:1086417 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_122924 0 0 0 0 1 MUC2 chr11:1086486 5'GT 1086486 Upstream 70bp
chr3 12613650 12613650 1 + C T SKCM 12613649 + 12613629 12613669 41 CAGCGACCCCCAGCCCAGCCCCGAGATGAAGCCGCATTCCT CAGCGACCCCCAGCCCAGCCCTGAGATGAAGCCGCATTCCT < 41bp 0.466501581132177 0.713375798430801 0.33016187 0.3908391 prediction 0.426751596861602 Functional Gain - MKRN2 ENSG00000075975 CDS Human protein_coding chr3:12613649 chr3:12613650 synonymous SNV . 0 22 hm5C_associated_SNPs_122926 0 0 1 0 1 MKRN2 chr3:12613568 3'AG 12613568 Downstream 83bp
chr16 2578698 2578698 1 + C T UCEC 2578697 + 2578677 2578717 41 GCCCCAATGGACGTCTGTGTCCGGCACTTCCTGCAGGCCAC GCCCCAATGGACGTCTGTGTCTGGCACTTCCTGCAGGCCAC < 41bp 0.57590223297736 0.789273060574212 0.4738078 0.73613745 prediction 0.426741655193703 Functional Gain - AMDHD2 ENSG00000162066 CDS Human protein_coding chr16:2578697 chr16:2578698 nonsynonymous SNV 0.996 5 22 hm5C_associated_SNPs_122929 0 0 1 0 2 AMDHD2 chr16:2578651 3'AG 2578651 Downstream 48bp
chr16 2578698 2578698 1 + C T UCEC 2578697 + 2578677 2578717 41 GCCCCAATGGACGTCTGTGTCCGGCACTTCCTGCAGGCCAC GCCCCAATGGACGTCTGTGTCTGGCACTTCCTGCAGGCCAC < 41bp 0.57590223297736 0.789273060574212 0.4738078 0.73613745 prediction 0.426741655193703 Functional Gain - AMDHD2 ENSG00000162066 CDS Human protein_coding chr16:2578697 chr16:2578698 nonsynonymous SNV 0.996 5 22 hm5C_associated_SNPs_122929 0 0 1 0 2 AMDHD2 chr16:2578719 5'GT 2578719 Upstream 22bp
chrX 147106407 147106407 1 + A G LIHC 147106404 + 147106384 147106424 41 GCGAACCGGCCGATGATTTACAAAGGCAGGACAACAGAGTT GCGAACCGGCCGATGATTTACAAGGGCAGGACAACAGAGTT < 41bp 0.552693019458714 0.766063101304296 0.22325876 0.30376726 prediction 0.426740163691164 Functional Gain - FMR1NB ENSG00000176988 CDS Human protein_coding chrX:147106404 chrX:147106407 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_122930 0 0 0 0 1 FMR1NB chrX:147106385 3'AG 147106385 Downstream 23bp
chr17 65665697 65665697 1 + C A UCEC 65665693 + 65665673 65665713 41 AAGGCTGGAGAGATAGTCATCAGCCTATCATGTGCTCCTAC AAGGCTGGAGAGATAGTCATCAGCATATCATGTGCTCCTAC < 41bp 0.304431472809592 0.713369961177324 0.3766377 0.23965421 prediction 0.426739922354649 Functional Gain - PITPNC1 ENSG00000154217 CDS Human protein_coding chr17:65665693 chr17:65665697 nonsynonymous SNV 0.883 3 25 hm5C_associated_SNPs_122931 0 0 1 0 2 PITPNC1 chr17:65665624 3'AG 65665624 Downstream 74bp
chr17 65665697 65665697 1 + C A UCEC 65665693 + 65665673 65665713 41 AAGGCTGGAGAGATAGTCATCAGCCTATCATGTGCTCCTAC AAGGCTGGAGAGATAGTCATCAGCATATCATGTGCTCCTAC < 41bp 0.304431472809592 0.713369961177324 0.3766377 0.23965421 prediction 0.426739922354649 Functional Gain - PITPNC1 ENSG00000154217 CDS Human protein_coding chr17:65665693 chr17:65665697 nonsynonymous SNV 0.883 3 25 hm5C_associated_SNPs_122931 0 0 1 0 2 PITPNC1 chr17:65665779 5'GT 65665779 Upstream 83bp
chr9 103054689 103054689 1 + C T UCEC 103054688 + 103054668 103054708 41 GCAGTGATGGAAGCAGGCATCCAGGAGTTCCCTCTGTTGAG GCAGTGATGGAAGCAGGCATCTAGGAGTTCCCTCTGTTGAG < 41bp 0.571971260793409 0.78534034727354 0.87999165 0.70687973 prediction 0.426738172960262 Functional Gain - INVS ENSG00000119509 CDS Human protein_coding chr9:103054688 chr9:103054689 nonsynonymous SNV 0.008 0 22 hm5C_associated_SNPs_122932 0 0 0 0 2 INVS chr9:103054608 3'AG 103054608 Downstream 82bp
chr9 103054689 103054689 1 + C T UCEC 103054688 + 103054668 103054708 41 GCAGTGATGGAAGCAGGCATCCAGGAGTTCCCTCTGTTGAG GCAGTGATGGAAGCAGGCATCTAGGAGTTCCCTCTGTTGAG < 41bp 0.571971260793409 0.78534034727354 0.87999165 0.70687973 prediction 0.426738172960262 Functional Gain - INVS ENSG00000119509 CDS Human protein_coding chr9:103054688 chr9:103054689 nonsynonymous SNV 0.008 0 22 hm5C_associated_SNPs_122932 0 0 0 0 2 INVS chr9:103054718 5'GT 103054718 Upstream 30bp
chr6 36193115 36193115 1 + C A UCEC 36193114 + 36193094 36193134 41 GAGCTGGTGTGGGCCAAGTGCCGAGGCTACCCCTCCTACCC GAGCTGGTGTGGGCCAAGTGCAGAGGCTACCCCTCCTACCC < 41bp 0.615728467207612 0.829097179141012 0.9267278 0.93291926 prediction 0.4267374238668 Functional Gain - BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36193114 chr6:36193115 synonymous SNV . 0 22 hm5C_associated_SNPs_122933 0 0 1 0 3 BRPF3 chr6:36193044 3'AG 36193044 Downstream 72bp
chr6 36193115 36193115 1 + C A UCEC 36193114 + 36193094 36193134 41 GAGCTGGTGTGGGCCAAGTGCCGAGGCTACCCCTCCTACCC GAGCTGGTGTGGGCCAAGTGCAGAGGCTACCCCTCCTACCC < 41bp 0.615728467207612 0.829097179141012 0.9267278 0.93291926 prediction 0.4267374238668 Functional Gain - BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36193114 chr6:36193115 synonymous SNV . 0 22 hm5C_associated_SNPs_122933 0 0 1 0 3 BRPF3 chr6:36193048 3'AG 36193048 Downstream 68bp
chr6 36193115 36193115 1 + C A UCEC 36193114 + 36193094 36193134 41 GAGCTGGTGTGGGCCAAGTGCCGAGGCTACCCCTCCTACCC GAGCTGGTGTGGGCCAAGTGCAGAGGCTACCCCTCCTACCC < 41bp 0.615728467207612 0.829097179141012 0.9267278 0.93291926 prediction 0.4267374238668 Functional Gain - BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36193114 chr6:36193115 synonymous SNV . 0 22 hm5C_associated_SNPs_122933 0 0 1 0 3 BRPF3 chr6:36193141 5'GT 36193141 Upstream 27bp
chr16 20448594 20448594 1 + C T COAD 20448593 + 20448573 20448613 41 TTGTTTTTCCCTTCCAGCTACCGGATCGGGCCTGTTGAAGT TTGTTTTTCCCTTCCAGCTACTGGATCGGGCCTGTTGAAGT < 41bp 0.458028957819698 0.713368346090141 0.19178823 0.17114645 prediction 0.426736692180283 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20448593 chr16:20448594 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_122934 0 0 0 0 2 ACSM5 chr16:20448590 3'AG 20448590 Downstream 5bp
chr16 20448594 20448594 1 + C T COAD 20448593 + 20448573 20448613 41 TTGTTTTTCCCTTCCAGCTACCGGATCGGGCCTGTTGAAGT TTGTTTTTCCCTTCCAGCTACTGGATCGGGCCTGTTGAAGT < 41bp 0.458028957819698 0.713368346090141 0.19178823 0.17114645 prediction 0.426736692180283 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20448593 chr16:20448594 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_122934 0 0 0 0 2 ACSM5 chr16:20448689 5'GT 20448689 Upstream 96bp
chr15 25438464 25438464 1 + A G rs532001189 25438461 + 25438441 25438481 41 TGCGCCGGGAAGGACGTGCCCTGAGTTGGGTCGATGATGAG TGCGCCGGGAAGGACGTGCCCTGGGTTGGGTCGATGATGAG < 41bp 0.547198870097221 0.760564504544024 0.06761202 0.12040928 prediction 0.426731268893605 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25438461 chr15:25438464 . . 0 24 hm5C_associated_SNPs_122936 0 0 0 2 1 SNHG14 chr15:25438556 5'GT 25438556 Upstream 93bp
chr4 71062308 71062308 1 + C A rs61747755 71062307 + 71062287 71062327 41 CCTGGGAGCCACATTGTCAGCCCCAGTAAGTGATTTTATGG CCTGGGAGCCACATTGTCAGCACCAGTAAGTGATTTTATGG < 41bp 0.583744600468318 0.797103149064087 0.08296955 0.13857132 prediction 0.426717097191537 Functional Gain - ODAM ENSG00000109205 CDS Human protein_coding chr4:71062307 chr4:71062308 synonymous SNV . 0 22 hm5C_associated_SNPs_122939 0 0 0 0 1 ODAM chr4:71062311 5'GT 71062311 Upstream 4bp
chr5 109202637 109202637 1 + A G BRCA 109202634 + 109202614 109202654 41 TGCATTCACCTCCCGGCACTCAGAATATAAGTGAGATCAAC TGCATTCACCTCCCGGCACTCAGGATATAAGTGAGATCAAC < 41bp 0.523731741666924 0.737089871640543 0.4422561 0.8540113 prediction 0.42671625994724 Functional Gain - MAN2A1 ENSG00000112893 CDS Human protein_coding chr5:109202634 chr5:109202637 nonsynonymous SNV 0.269 1 24 hm5C_associated_SNPs_122940 0 0 1 0 1 MAN2A1 chr5:109202547 3'AG 109202547 Downstream 91bp
chr8 18079577 18079577 1 + T G rs4986992 18079575 + 18079555 18079595 41 TCATGGACATTGAAGCATATCTTGAAAGAATTGGCTATAAG TCATGGACATTGAAGCATATCTGGAAAGAATTGGCTATAAG < 41bp 0.659416592532238 0.872768920626462 0.08968955 0.24450663 prediction 0.426704656188449 Functional Gain - NAT1 ENSG00000171428 CDS Human protein_coding chr8:18079575 chr8:18079577 synonymous SNV . 0 23 hm5C_associated_SNPs_122942 0 0 0 0 1 NAT1 chr8:18079551 3'AG 18079551 Downstream 27bp
chr2 185798457 185798457 1 + T C UCEC 185798454 + 185798434 185798474 41 GGCTGAGCTAAGAAAGGAAACTGTATGGTGAGTATCCAATG GGCTGAGCTAAGAAAGGAAACTGCATGGTGAGTATCCAATG < 41bp 0.502959601745517 0.716310282654098 0.06453094 0.07141265 prediction 0.426701361817162 Functional Gain - ZNF804A ENSG00000170396 CDS Human protein_coding chr2:185798454 chr2:185798457 nonsynonymous SNV 0.984 0 24 hm5C_associated_SNPs_122943 0 0 0 0 1 ZNF804A chr2:185798460 5'GT 185798460 Upstream 4bp
chr1 37945919 37945919 1 + C A CESC 37945918 + 37945898 37945938 41 AACAAGGAGGTCTTCTCCTGCCGGGGCATCCTGCTGGCAGT AACAAGGAGGTCTTCTCCTGCAGGGGCATCCTGCTGGCAGT < 41bp 0.633320540273064 0.846670602169359 0.9080177 0.9157015 prediction 0.42670012379259 Functional Gain - ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37945918 chr1:37945919 synonymous SNV . 0 22 hm5C_associated_SNPs_122944 0 0 1 0 1 ZC3H12A chr1:37945891 3'AG 37945891 Downstream 29bp
chr11 6630817 6630817 1 + T C LIHC 6630815 + 6630795 6630835 41 CCTGCTCCTCATCCTACTCTCATCACACACTGGATGCCGTA CCTGCTCCTCATCCTACTCTCACCACACACTGGATGCCGTA < 41bp 0.426283213822335 0.713346643306076 0.059317887 0.031440973 prediction 0.426693286612153 Functional Gain - ILK ENSG00000166333 CDS Human protein_coding chr11:6630815 chr11:6630817 nonsynonymous SNV 0.990 5 23 hm5C_associated_SNPs_122946 0 0 1 0 2 ILK chr11:6630743 3'AG 6630743 Downstream 75bp
chr11 6630817 6630817 1 + T C LIHC 6630815 + 6630795 6630835 41 CCTGCTCCTCATCCTACTCTCATCACACACTGGATGCCGTA CCTGCTCCTCATCCTACTCTCACCACACACTGGATGCCGTA < 41bp 0.426283213822335 0.713346643306076 0.059317887 0.031440973 prediction 0.426693286612153 Functional Gain - ILK ENSG00000166333 CDS Human protein_coding chr11:6630815 chr11:6630817 nonsynonymous SNV 0.990 5 23 hm5C_associated_SNPs_122946 0 0 1 0 2 ILK chr11:6630870 5'GT 6630870 Upstream 54bp
chr7 92161757 92161757 1 + T C GBM 92161754 + 92161734 92161774 41 ATGGATGAACAGAGTTTCTTCGGTGGATTGCTTCATGTGTG ATGGATGAACAGAGTTTCTTCGGCGGATTGCTTCATGTGTG < 41bp 0.522479108710195 0.735825426045988 0.897259 0.9076698 prediction 0.426692634671586 Functional Gain - RBM48 ENSG00000127993 CDS Human protein_coding chr7:92161754 chr7:92161757 synonymous SNV . 0 24 hm5C_associated_SNPs_122947 0 0 1 0 1 RBM48 chr7:92161718 3'AG 92161718 Downstream 40bp
chr7 127239517 127239517 1 + A G UCEC 127239514 + 127239494 127239534 41 CGTTATGGCTATGTGGGCTCCTCATCGGGCCATGACCTCAT CGTTATGGCTATGTGGGCTCCTCGTCGGGCCATGACCTCAT < 41bp 0.468430741110924 0.713341971408117 0.41462535 0.31128776 prediction 0.426683942816235 Functional Gain - FSCN3 ENSG00000106328 CDS Human protein_coding chr7:127239514 chr7:127239517 synonymous SNV . 0 24 hm5C_associated_SNPs_122949 0 0 0 0 1 FSCN3 chr7:127239435 3'AG 127239435 Downstream 83bp
chr17 78921115 78921115 1 + A G LUAD 78921112 + 78921092 78921132 41 GGGTCACTGCCATGGAGTATCTGAACGGCCAGGACTGCTCG GGGTCACTGCCATGGAGTATCTGGACGGCCAGGACTGCTCG < 41bp 0.576050489168113 0.789389392298102 0.7714188 0.89768213 prediction 0.426677806259976 Functional Gain - RPTOR ENSG00000141564 CDS Human protein_coding chr17:78921112 chr17:78921115 nonsynonymous SNV 0.917 4 24 hm5C_associated_SNPs_122951 0 0 1 0 2 RPTOR chr17:78921027 3'AG 78921027 Downstream 89bp
chr17 78921115 78921115 1 + A G LUAD 78921112 + 78921092 78921132 41 GGGTCACTGCCATGGAGTATCTGAACGGCCAGGACTGCTCG GGGTCACTGCCATGGAGTATCTGGACGGCCAGGACTGCTCG < 41bp 0.576050489168113 0.789389392298102 0.7714188 0.89768213 prediction 0.426677806259976 Functional Gain - RPTOR ENSG00000141564 CDS Human protein_coding chr17:78921112 chr17:78921115 nonsynonymous SNV 0.917 4 24 hm5C_associated_SNPs_122951 0 0 1 0 2 RPTOR chr17:78921151 5'GT 78921151 Upstream 37bp
chr1 109325309 109325309 1 + A G COAD 109325306 + 109325286 109325326 41 TATGAAAGAAATTTCATCAACAAAGAAAGCAACAGAAGGAA TATGAAAGAAATTTCATCAACAAGGAAAGCAACAGAAGGAA < 41bp 0.492098156768435 0.713338031139906 0.3511252 0.40163618 prediction 0.426676062279812 Functional Gain - STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109325306 chr1:109325309 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_122952 0 0 1 0 2 STXBP3 chr1:109325271 3'AG 109325271 Downstream 39bp
chr1 109325309 109325309 1 + A G COAD 109325306 + 109325286 109325326 41 TATGAAAGAAATTTCATCAACAAAGAAAGCAACAGAAGGAA TATGAAAGAAATTTCATCAACAAGGAAAGCAACAGAAGGAA < 41bp 0.492098156768435 0.713338031139906 0.3511252 0.40163618 prediction 0.426676062279812 Functional Gain - STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109325306 chr1:109325309 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_122952 0 0 1 0 2 STXBP3 chr1:109325328 5'GT 109325328 Upstream 20bp
chr10 51572485 51572485 1 + C A rs575423001 51572481 + 51572461 51572501 41 GCAGCTGGTGAGTCGGTGACCTGGCCTGTGAGGTACGTCTG GCAGCTGGTGAGTCGGTGACCTGGACTGTGAGGTACGTCTG < 41bp 0.70162708788305 0.914961870800079 0.44547838 0.46229511 prediction 0.426669565834059 Functional Gain - NCOA4 ENSG00000138293 UTR5 Human other chr10:51572481 chr10:51572485 . . 0 25 hm5C_associated_SNPs_122953 0 0 1 0 1 NCOA4 chr10:51572492 5'GT 51572492 Upstream 8bp
chr4 947071 947071 1 + C A PAAD 947070 + 947050 947090 41 GCTCTGTACCGACGACACGTCCTGGGCATCGTCCTCCAAGG GCTCTGTACCGACGACACGTCATGGGCATCGTCCTCCAAGG < 41bp 0.445677608556942 0.713331545031896 0.10923499 0.1609889 prediction 0.426663090063791 Functional Gain - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:947070 chr4:947071 nonsynonymous SNV 0.023 3 22 hm5C_associated_SNPs_122954 0 0 0 0 2 TMEM175 chr4:946978 3'AG 946978 Downstream 94bp
chr4 947071 947071 1 + C A PAAD 947070 + 947050 947090 41 GCTCTGTACCGACGACACGTCCTGGGCATCGTCCTCCAAGG GCTCTGTACCGACGACACGTCATGGGCATCGTCCTCCAAGG < 41bp 0.445677608556942 0.713331545031896 0.10923499 0.1609889 prediction 0.426663090063791 Functional Gain - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:947070 chr4:947071 nonsynonymous SNV 0.023 3 22 hm5C_associated_SNPs_122954 0 0 0 0 2 TMEM175 chr4:947142 5'GT 947142 Upstream 72bp
chr20 43804746 43804746 1 + T C BRCA 43804743 + 43804723 43804763 41 ATCAAGAAGTGCTGTGAAGGCTCTTGCGGGATGGCCTGTTT ATCAAGAAGTGCTGTGAAGGCTCCTGCGGGATGGCCTGTTT < 41bp 0.516631193704709 0.729962734116205 0.011599153 0.052687228 prediction 0.426663080822991 Functional Gain - PI3 ENSG00000124102 CDS Human protein_coding chr20:43804743 chr20:43804746 synonymous SNV . 0 24 hm5C_associated_SNPs_122955 0 0 0 0 1 PI3 chr20:43804777 5'GT 43804777 Upstream 32bp
chr3 154802055 154802055 1 + C A COAD 154802051 + 154802031 154802071 41 TCCACTGGAGATCAGCCTCTCGGTCCTTGTCCTGCTCCTCA TCCACTGGAGATCAGCCTCTCGGTACTTGTCCTGCTCCTCA < 41bp 0.305542899705337 0.713330330378135 0.2617235 0.30064905 prediction 0.426660660756271 Functional Gain - MME ENSG00000196549 CDS Human protein_coding chr3:154802051 chr3:154802055 synonymous SNV . 0 25 hm5C_associated_SNPs_122956 0 0 0 0 1 MME chr3:154802116 5'GT 154802116 Upstream 62bp
chr12 7054954 7054954 1 + T G LUSC 7054951 + 7054931 7054971 41 CAGGTGTCCTTAAGTTTGCTCGCTTGGTCAAGTCCTACGAA CAGGTGTCCTTAAGTTTGCTCGCGTGGTCAAGTCCTACGAA < 41bp 0.310899543612693 0.713324148392724 0.37406144 0.92436266 prediction 0.426648296785448 Functional Gain - C12orf57 ENSG00000111678 CDS Human protein_coding chr12:7054951 chr12:7054954 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_122959 0 0 1 0 1 C12orf57 chr12:7054934 3'AG 7054934 Downstream 21bp
chr19 55086976 55086976 1 + C A SKCM 55086975 + 55086955 55086995 41 CAGTGCACACAACCTCTCCTCCGAGTGGTCGGCCCCCAGTG CAGTGCACACAACCTCTCCTCAGAGTGGTCGGCCCCCAGTG < 41bp 0.446464631435475 0.713323936802073 0.08046642 0.7978494 prediction 0.426647873604147 Functional Gain - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55086975 chr19:55086976 synonymous SNV . 0 22 hm5C_associated_SNPs_122961 0 0 0 0 1 LILRA2 chr19:55087019 5'GT 55087019 Upstream 44bp
chr5 141312854 141312854 1 + C A rs201533364 141312850 + 141312830 141312870 41 AGAACATGAAGAGTGGCGACCACACGGCAGCCTTTTCTTAC AGAACATGAAGAGTGGCGACCACAAGGCAGCCTTTTCTTAC < 41bp 0.290421882701871 0.713319338743179 0.0877105 0.1360836 prediction 0.426638677486357 Functional Gain - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141312850 chr5:141312854 nonsynonymous SNV 0.014 0 25 hm5C_associated_SNPs_122966 0 0 1 0 1 KIAA0141 chr5:141312824 3'AG 141312824 Downstream 31bp
chr7 2403339 2403339 1 + C T COAD 2403338 + 2403318 2403358 41 GTGATTTTTGAGAGTGGAGACCGCACTTCCATATTCTGGAA GTGATTTTTGAGAGTGGAGACTGCACTTCCATATTCTGGAA < 41bp 0.448722143086837 0.713297623858713 0.03069511 0.036114037 prediction 0.426595247717425 Functional Gain - EIF3B ENSG00000106263 CDS Human protein_coding chr7:2403338 chr7:2403339 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_122975 0 0 1 0 2 EIF3B chr7:2403267 3'AG 2403267 Downstream 73bp
chr7 2403339 2403339 1 + C T COAD 2403338 + 2403318 2403358 41 GTGATTTTTGAGAGTGGAGACCGCACTTCCATATTCTGGAA GTGATTTTTGAGAGTGGAGACTGCACTTCCATATTCTGGAA < 41bp 0.448722143086837 0.713297623858713 0.03069511 0.036114037 prediction 0.426595247717425 Functional Gain - EIF3B ENSG00000106263 CDS Human protein_coding chr7:2403338 chr7:2403339 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_122975 0 0 1 0 2 EIF3B chr7:2403395 5'GT 2403395 Upstream 57bp
chr2 233273236 233273236 1 + C G LUSC 233273232 + 233273212 233273252 41 GTGCCCGGTACGTGTGGAACCGCACTGAGCTCCTGCAGGCT GTGCCCGGTACGTGTGGAACCGCAGTGAGCTCCTGCAGGCT < 41bp 0.404440448205414 0.713293541478534 0.39560425 0.7706092 prediction 0.426587082957068 Functional Gain - ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233273232 chr2:233273236 nonsynonymous SNV 0.183 1 25 hm5C_associated_SNPs_122976 0 0 0 0 1 ALPPL2 chr2:233273283 5'GT 233273283 Upstream 48bp
chr14 100602267 100602267 1 + C T UCEC 100602266 + 100602246 100602286 41 ATCCTAGTACCTCCCCCTCTCCGGGGACCCGAGCAGCCAGC ATCCTAGTACCTCCCCCTCTCTGGGGACCCGAGCAGCCAGC < 41bp 0.612255341306921 0.825547483693434 0.9294591 0.8743359 prediction 0.426584284773026 Functional Gain - EVL ENSG00000196405 CDS Human protein_coding chr14:100602266 chr14:100602267 nonsynonymous SNV 0.984 1 22 hm5C_associated_SNPs_122978 0 0 1 0 2 EVL chr14:100602242 3'AG 100602242 Downstream 26bp
chr14 100602267 100602267 1 + C T UCEC 100602266 + 100602246 100602286 41 ATCCTAGTACCTCCCCCTCTCCGGGGACCCGAGCAGCCAGC ATCCTAGTACCTCCCCCTCTCTGGGGACCCGAGCAGCCAGC < 41bp 0.612255341306921 0.825547483693434 0.9294591 0.8743359 prediction 0.426584284773026 Functional Gain - EVL ENSG00000196405 CDS Human protein_coding chr14:100602266 chr14:100602267 nonsynonymous SNV 0.984 1 22 hm5C_associated_SNPs_122978 0 0 1 0 2 EVL chr14:100602305 5'GT 100602305 Upstream 39bp
chr20 2592923 2592923 1 + C A OV 2592922 + 2592902 2592942 41 TGGTTGGAACGAGAGTGTCCCCCGACCACCCCTGCACCCTG TGGTTGGAACGAGAGTGTCCCACGACCACCCCTGCACCCTG < 41bp 0.630808984924783 0.844101063785455 0.0829528 0.13025871 prediction 0.426584157721344 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2592922 chr20:2592923 synonymous SNV . 0 22 hm5C_associated_SNPs_122979 0 0 0 0 2 TMC2 chr20:2592837 3'AG 2592837 Downstream 87bp
chr20 2592923 2592923 1 + C A OV 2592922 + 2592902 2592942 41 TGGTTGGAACGAGAGTGTCCCCCGACCACCCCTGCACCCTG TGGTTGGAACGAGAGTGTCCCACGACCACCCCTGCACCCTG < 41bp 0.630808984924783 0.844101063785455 0.0829528 0.13025871 prediction 0.426584157721344 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2592922 chr20:2592923 synonymous SNV . 0 22 hm5C_associated_SNPs_122979 0 0 0 0 2 TMC2 chr20:2592986 5'GT 2592986 Upstream 64bp
chr6 16129590 16129590 1 + A G UCEC 16129587 + 16129567 16129607 41 TGACGAGGCCGGACGCGGTGCTGATGGAGGTGGAGGTGGAG TGACGAGGCCGGACGCGGTGCTGGTGGAGGTGGAGGTGGAG < 41bp 0.475893391289737 0.713289348018855 0.4392531 0.3656425 prediction 0.42657869603771 Functional Gain - MYLIP ENSG00000007944 CDS Human protein_coding chr6:16129587 chr6:16129590 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_122981 0 0 1 0 1 MYLIP chr6:16129640 5'GT 16129640 Upstream 51bp
chr20 61296364 61296364 1 + C T rs145175877 61296363 + 61296343 61296383 41 CACCGAGGCCACTCTCATCACCGGCATGTCCACGTTCAGCC CACCGAGGCCACTCTCATCACTGGCATGTCCACGTTCAGCC < 41bp 0.452762461378176 0.713277313747176 0.025272995 0.055241764 prediction 0.426554627494351 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61296363 chr20:61296364 synonymous SNV . 0 22 hm5C_associated_SNPs_122988 0 0 1 0 2 SLCO4A1 chr20:61296286 3'AG 61296286 Downstream 79bp
chr20 61296364 61296364 1 + C T rs145175877 61296363 + 61296343 61296383 41 CACCGAGGCCACTCTCATCACCGGCATGTCCACGTTCAGCC CACCGAGGCCACTCTCATCACTGGCATGTCCACGTTCAGCC < 41bp 0.452762461378176 0.713277313747176 0.025272995 0.055241764 prediction 0.426554627494351 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61296363 chr20:61296364 synonymous SNV . 0 22 hm5C_associated_SNPs_122988 0 0 1 0 2 SLCO4A1 chr20:61296440 5'GT 61296440 Upstream 77bp
chr7 138872193 138872193 1 + T C COAD 138872191 + 138872171 138872211 41 CTGCCAAAGCTTTTGATGTCCTTGAGAGGCTGGATCCTAAC CTGCCAAAGCTTTTGATGTCCTCGAGAGGCTGGATCCTAAC < 41bp 0.661094722067367 0.874368990103355 0.040664017 0.27919483 prediction 0.426548536071975 Functional Gain - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138872191 chr7:138872193 synonymous SNV . 0 23 hm5C_associated_SNPs_122991 0 0 1 0 2 TTC26 chr7:138872152 3'AG 138872152 Downstream 42bp
chr7 138872193 138872193 1 + T C COAD 138872191 + 138872171 138872211 41 CTGCCAAAGCTTTTGATGTCCTTGAGAGGCTGGATCCTAAC CTGCCAAAGCTTTTGATGTCCTCGAGAGGCTGGATCCTAAC < 41bp 0.661094722067367 0.874368990103355 0.040664017 0.27919483 prediction 0.426548536071975 Functional Gain - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138872191 chr7:138872193 synonymous SNV . 0 23 hm5C_associated_SNPs_122991 0 0 1 0 2 TTC26 chr7:138872285 5'GT 138872285 Upstream 93bp
chr19 11473296 11473296 1 + C T rs118107242 11473295 + 11473275 11473315 41 GGTGGGCGTGGTCCGCGTGGCCGAGTACCGAAACCACTGGT GGTGGGCGTGGTCCGCGTGGCTGAGTACCGAAACCACTGGT < 41bp 0.480933005311931 0.713265341446307 0.18496844 0.1597471 prediction 0.426530682892614 Functional Gain - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11473295 chr19:11473296 synonymous SNV . 0 22 hm5C_associated_SNPs_122994 0 0 1 0 1 PLPPR2 chr19:11473365 5'GT 11473365 Upstream 70bp
chr22 26706742 26706742 1 + C T COAD 26706741 + 26706721 26706761 41 CTGAGCGAAGGCAACACCATCCGCATCGAGTTCACGTCCGA CTGAGCGAAGGCAACACCATCTGCATCGAGTTCACGTCCGA < 41bp 0.439361541417487 0.713264842781452 0.09512892 0.16931689 prediction 0.426529685562903 Functional Gain - SEZ6L ENSG00000100095 CDS Human protein_coding chr22:26706741 chr22:26706742 nonsynonymous SNV 0.898 2 22 hm5C_associated_SNPs_122995 0 0 0 0 1 SEZ6L chr22:26706802 5'GT 26706802 Upstream 61bp
chr2 69207077 69207077 1 + C T UCEC 69207076 + 69207056 69207096 41 GGGACCAGGAGGACCACCTCCCAAGGGCCTGATGTACTCAG GGGACCAGGAGGACCACCTCCTAAGGGCCTGATGTACTCAG < 41bp 0.467049495128985 0.713261319085898 0.23358557 0.096734196 prediction 0.426522638171796 Functional Gain - GKN1 ENSG00000169605 CDS Human protein_coding chr2:69207076 chr2:69207077 synonymous SNV . 0 22 hm5C_associated_SNPs_122998 0 0 0 0 1 GKN1 chr2:69207045 3'AG 69207045 Downstream 33bp
chr2 272130 272130 1 + A G STAD 272127 + 272107 272147 41 GCATGAAGAGGCACGGCATTCCCATGAGCCACGTTGCCCGG GCATGAAGAGGCACGGCATTCCCGTGAGCCACGTTGCCCGG < 41bp 0.560292340046567 0.773548821351315 0.10685533 0.29486609 prediction 0.426512962609497 Functional Gain - ACP1 ENSG00000143727 CDS Human protein_coding chr2:272127 chr2:272130 nonsynonymous SNV 0.772 0 24 hm5C_associated_SNPs_123000 0 0 1 0 2 ACP1 chr2:272037 3'AG 272037 Downstream 94bp
chr2 272130 272130 1 + A G STAD 272127 + 272107 272147 41 GCATGAAGAGGCACGGCATTCCCATGAGCCACGTTGCCCGG GCATGAAGAGGCACGGCATTCCCGTGAGCCACGTTGCCCGG < 41bp 0.560292340046567 0.773548821351315 0.10685533 0.29486609 prediction 0.426512962609497 Functional Gain - ACP1 ENSG00000143727 CDS Human protein_coding chr2:272127 chr2:272130 nonsynonymous SNV 0.772 0 24 hm5C_associated_SNPs_123000 0 0 1 0 2 ACP1 chr2:272150 5'GT 272150 Upstream 21bp
chr19 54418682 54418682 1 + T C UCEC 54418680 + 54418660 54418700 41 TTCCTCGTGTTCACGGCCTTCGTCATCAGCAACATCGGCCA TTCCTCGTGTTCACGGCCTTCGCCATCAGCAACATCGGCCA < 41bp 0.660306119583781 0.873560979655259 0.044500917 0.28288925 prediction 0.426509720142955 Functional Gain - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54418680 chr19:54418682 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_123004 0 0 0 0 2 CACNG7 chr19:54418619 3'AG 54418619 Downstream 64bp
chr19 54418682 54418682 1 + T C UCEC 54418680 + 54418660 54418700 41 TTCCTCGTGTTCACGGCCTTCGTCATCAGCAACATCGGCCA TTCCTCGTGTTCACGGCCTTCGCCATCAGCAACATCGGCCA < 41bp 0.660306119583781 0.873560979655259 0.044500917 0.28288925 prediction 0.426509720142955 Functional Gain - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54418680 chr19:54418682 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_123004 0 0 0 0 2 CACNG7 chr19:54418759 5'GT 54418759 Upstream 78bp
chr11 36250785 36250785 1 + C A UCEC 36250781 + 36250761 36250801 41 TCTGAACCAAGCCGACCTGCCCCCCTACCGCTCCCGGTCCG TCTGAACCAAGCCGACCTGCCCCCATACCGCTCCCGGTCCG < 41bp 0.294659101390581 0.713250436301019 0.014147639 0.056658417 prediction 0.426500872602039 Functional Gain - LDLRAD3 ENSG00000179241 CDS Human protein_coding chr11:36250781 chr11:36250785 synonymous SNV . 0 25 hm5C_associated_SNPs_123008 0 0 1 0 1 LDLRAD3 chr11:36250710 3'AG 36250710 Downstream 76bp
chr22 20379839 20379839 1 + C T UCEC 20379838 + 20379818 20379858 41 TCGCGGAGTGCAGTACAGCACCGAGTCGCTCATGGAGGAGA TCGCGGAGTGCAGTACAGCACTGAGTCGCTCATGGAGGAGA < 41bp 0.514896570283662 0.72814690938936 0.278139 0.3111462 prediction 0.426500678211396 Functional Gain - TMEM191B ENSG00000206176 ncRNA_exonic Human other chr22:20379838 chr22:20379839 . . 0 22 hm5C_associated_SNPs_123009 0 0 0 0 2 TMEM191B chr22:20379803 3'AG 20379803 Downstream 37bp
chr22 20379839 20379839 1 + C T UCEC 20379838 + 20379818 20379858 41 TCGCGGAGTGCAGTACAGCACCGAGTCGCTCATGGAGGAGA TCGCGGAGTGCAGTACAGCACTGAGTCGCTCATGGAGGAGA < 41bp 0.514896570283662 0.72814690938936 0.278139 0.3111462 prediction 0.426500678211396 Functional Gain - TMEM191B ENSG00000206176 ncRNA_exonic Human other chr22:20379838 chr22:20379839 . . 0 22 hm5C_associated_SNPs_123009 0 0 0 0 2 TMEM191B chr22:20379875 5'GT 20379875 Upstream 37bp
chr12 123718019 123718019 1 + C A rs577696104 123718018 + 123717998 123718038 41 GGATCGCGATTGCGAATCCTCCGCTGAGGTGATTTGGATAT GGATCGCGATTGCGAATCCTCAGCTGAGGTGATTTGGATAT < 41bp 0.467120764271083 0.713247687991582 0.14863193 0.31814694 prediction 0.426495375983165 Functional Gain - C12orf65 ENSG00000130921 UTR5 Human protein_coding chr12:123718018 chr12:123718019 . . 0 22 hm5C_associated_SNPs_123011 0 0 1 0 1 C12orf65 chr12:123718078 5'GT 123718078 Upstream 60bp
chr11 59857216 59857216 1 + C G rs35107181 59857212 + 59857192 59857232 41 ATCTCCCCAGGAAGTATCTTCAGGCAGACTATTGAAGTCGG ATCTCCCCAGGAAGTATCTTCAGGGAGACTATTGAAGTCGG < 41bp 0.664388984648559 0.877632049249577 0.28827977 0.8711108 prediction 0.426486129202036 Functional Gain - MS4A2 ENSG00000149534 CDS Human protein_coding chr11:59857212 chr11:59857216 synonymous SNV . 0 25 hm5C_associated_SNPs_123012 0 0 0 0 1 MS4A2 chr11:59857294 5'GT 59857294 Upstream 79bp
chr1 16073381 16073381 1 + C A LUAD 16073380 + 16073360 16073400 41 AGAGGAGCAGCGGCAGCACCCCGGCCTGCAGAGCCAGGTGC AGAGGAGCAGCGGCAGCACCCAGGCCTGCAGAGCCAGGTGC < 41bp 0.620976399746936 0.83421814735438 0.55078405 0.90352595 prediction 0.426483495214888 Functional Gain - TMEM82 ENSG00000162460 CDS Human protein_coding chr1:16073380 chr1:16073381 synonymous SNV . 0 22 hm5C_associated_SNPs_123013 0 0 0 0 1 TMEM82 chr1:16073362 3'AG 16073362 Downstream 20bp
chr5 147715193 147715193 1 + T C UCEC 147715191 + 147715171 147715211 41 AGTACTATGAGAGCAACAGCCATAGTCCTACTCTTGGCTCT AGTACTATGAGAGCAACAGCCACAGTCCTACTCTTGGCTCT < 41bp 0.566591325118771 0.779832806865821 0.3211157 0.284788 prediction 0.4264829634941 Functional Gain - SPINK9 ENSG00000204909 CDS Human protein_coding chr5:147715191 chr5:147715193 nonsynonymous SNV 0.043 0 23 hm5C_associated_SNPs_123015 0 0 0 0 1 SPINK9 chr5:147715231 5'GT 147715231 Upstream 39bp
chr17 21202197 21202197 1 + C T UCEC 21202196 + 21202176 21202216 41 TTCTTTCTCCACAGACCCCCCCGGAACCTGGACTCCCGGAC TTCTTTCTCCACAGACCCCCCTGGAACCTGGACTCCCGGAC < 41bp 0.604761223627406 0.818001231084598 0.32471582 0.30459088 prediction 0.426480014914385 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21202196 chr17:21202197 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_123016 0 0 1 0 1 MAP2K3 chr17:21202190 3'AG 21202190 Downstream 8bp
chr14 20942941 20942941 1 + C T MESO 20942940 + 20942920 20942960 41 TTTGCTTCGAAGGTGACATTCCCAGTGAGGGTTTTCCACCT TTTGCTTCGAAGGTGACATTCTCAGTGAGGGTTTTCCACCT < 41bp 0.449652255773759 0.713236715830251 0.2881239 0.26503634 prediction 0.426473431660501 Functional Gain - PNP ENSG00000198805 CDS Human protein_coding chr14:20942940 chr14:20942941 nonsynonymous SNV 0.940 5 22 hm5C_associated_SNPs_123017 0 0 1 3 1 PNP chr14:20942932 3'AG 20942932 Downstream 10bp
chr17 40843310 40843310 1 + T C LUAD 40843307 + 40843287 40843327 41 ACTGTGACGCTGACCAGCCCCAGTGGTGAGGGGGCAAAGGG ACTGTGACGCTGACCAGCCCCAGCGGTGAGGGGGCAAAGGG < 41bp 0.490915174428195 0.713236580265814 0.3420961 0.5994481 prediction 0.426473160531629 Functional Gain - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40843307 chr17:40843310 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_123018 0 0 0 0 1 CNTNAP1 chr17:40843311 5'GT 40843311 Upstream 2bp
chr16 3334113 3334113 1 + A G LIHC 3334110 + 3334090 3334130 41 CCATCCTGCCCCAGGAGATCCAGAGCAGGGTGCAGGAGCTG CCATCCTGCCCCAGGAGATCCAGGGCAGGGTGCAGGAGCTG < 41bp 0.596342587168269 0.809572188476968 0.6243769 0.7935728 prediction 0.426459202617399 Functional Gain - ZNF263 ENSG00000006194 CDS Human protein_coding chr16:3334110 chr16:3334113 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_123021 0 0 1 0 1 ZNF263 chr16:3334205 5'GT 3334205 Upstream 93bp
chr8 121015349 121015349 1 + C T PRAD 121015348 + 121015328 121015368 41 TGTGCTCTGCAACCCCAAGTCCGGTGAGTGCCCAAAAGGTG TGTGCTCTGCAACCCCAAGTCTGGTGAGTGCCCAAAAGGTG < 41bp 0.590198320919115 0.803422928235834 0.25303954 0.3356427 prediction 0.426449214633436 Functional Gain - DEPTOR ENSG00000155792 CDS Human protein_coding chr8:121015348 chr8:121015349 synonymous SNV . 0 22 hm5C_associated_SNPs_123022 0 0 0 0 1 DEPTOR chr8:121015350 5'GT 121015350 Upstream 2bp
chr16 66643358 66643358 1 + C T UCEC 66643357 + 66643337 66643377 41 GGACTTCCTGCGCTGTGTCACCGCGGCCCTCATCTACTTTG GGACTTCCTGCGCTGTGTCACTGCGGCCCTCATCTACTTTG < 41bp 0.600454096618718 0.813678305356583 0.6230899 0.2929917 prediction 0.42644841747573 Functional Gain - CMTM3 ENSG00000140931 CDS Human protein_coding chr16:66643357 chr16:66643358 synonymous SNV . 0 22 hm5C_associated_SNPs_123023 0 0 1 0 2 CMTM3 chr16:66643338 3'AG 66643338 Downstream 21bp
chr16 66643358 66643358 1 + C T UCEC 66643357 + 66643337 66643377 41 GGACTTCCTGCGCTGTGTCACCGCGGCCCTCATCTACTTTG GGACTTCCTGCGCTGTGTCACTGCGGCCCTCATCTACTTTG < 41bp 0.600454096618718 0.813678305356583 0.6230899 0.2929917 prediction 0.42644841747573 Functional Gain - CMTM3 ENSG00000140931 CDS Human protein_coding chr16:66643357 chr16:66643358 synonymous SNV . 0 22 hm5C_associated_SNPs_123023 0 0 1 0 2 CMTM3 chr16:66643433 5'GT 66643433 Upstream 76bp
chr1 57378088 57378088 1 + C T DLBC 57378087 + 57378067 57378107 41 TGCCCACAGATGCAGCCTATCCACGAGGTGCTGCGGCACAC TGCCCACAGATGCAGCCTATCTACGAGGTGCTGCGGCACAC < 41bp 0.593946757549678 0.807168464035537 0.19037291 0.17717656 prediction 0.426443412971717 Functional Gain - C8A ENSG00000157131 CDS Human protein_coding chr1:57378087 chr1:57378088 nonsynonymous SNV 0.011 1 22 hm5C_associated_SNPs_123024 0 0 1 0 1 C8A chr1:57378076 3'AG 57378076 Downstream 13bp
chr1 202276493 202276493 1 + C A LUSC 202276492 + 202276472 202276512 41 ACGCCATCCGGTCCATCCACCCCGAGGCCTTCTCCACCCTG ACGCCATCCGGTCCATCCACCACGAGGCCTTCTCCACCCTG < 41bp 0.633913118105213 0.847130778010255 0.4105904 0.6913477 prediction 0.426435319810084 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202276492 chr1:202276493 nonsynonymous SNV 0.955 4 22 hm5C_associated_SNPs_123027 0 0 0 0 2 LGR6 chr1:202276458 3'AG 202276458 Downstream 36bp
chr1 202276493 202276493 1 + C A LUSC 202276492 + 202276472 202276512 41 ACGCCATCCGGTCCATCCACCCCGAGGCCTTCTCCACCCTG ACGCCATCCGGTCCATCCACCACGAGGCCTTCTCCACCCTG < 41bp 0.633913118105213 0.847130778010255 0.4105904 0.6913477 prediction 0.426435319810084 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202276492 chr1:202276493 nonsynonymous SNV 0.955 4 22 hm5C_associated_SNPs_123027 0 0 0 0 2 LGR6 chr1:202276529 5'GT 202276529 Upstream 37bp
chr16 77759477 77759477 1 + A G BRCA 77759474 + 77759454 77759494 41 TTTGTTGTTCACCGTCCGGTCAGAGAAGGTAGGTGGACAAA TTTGTTGTTCACCGTCCGGTCAGGGAAGGTAGGTGGACAAA < 41bp 0.566521704562851 0.779737398776358 0.50952846 0.8786746 prediction 0.426431388427014 Functional Gain - NUDT7 ENSG00000140876 CDS Human protein_coding chr16:77759474 chr16:77759477 nonsynonymous SNV 0.949 0 24 hm5C_associated_SNPs_123028 0 0 0 0 1 NUDT7 chr16:77759481 5'GT 77759481 Upstream 5bp
chr1 1403781 1403781 1 + C T SKCM 1403780 + 1403760 1403800 41 CTAGGCCACGGCGTATGCCTCCAAGGACGGGGTCCTGACCG CTAGGCCACGGCGTATGCCTCTAAGGACGGGGTCCTGACCG < 41bp 0.566188384614313 0.779395504943674 0.108582646 0.14827955 prediction 0.426414240658723 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1403780 chr1:1403781 synonymous SNV . 0 22 hm5C_associated_SNPs_123030 0 0 0 0 1 ATAD3C chr1:1403764 3'AG 1403764 Downstream 18bp
chr13 113975996 113975996 1 + A G OV 113975993 + 113975973 113976013 41 GCGTTTTCAGTCAATATATTCAAAGTGTGGGTCCAGGCTTT GCGTTTTCAGTCAATATATTCAAGGTGTGGGTCCAGGCTTT < 41bp 0.609300495450918 0.822499151852911 0.31046265 0.8200189 prediction 0.426397312803986 Functional Gain - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113975993 chr13:113975996 synonymous SNV . 0 24 hm5C_associated_SNPs_123034 0 0 1 0 1 LAMP1 chr13:113976042 5'GT 113976042 Upstream 47bp
chr2 228337296 228337296 1 + C T rs140251536 228337295 + 228337275 228337315 41 CTTCGTGTGTACCTCCTGCTCCGGCAGCCTGTGAGTGCGGG CTTCGTGTGTACCTCCTGCTCTGGCAGCCTGTGAGTGCGGG < 41bp 0.512574601741042 0.725763964657031 0.16749784 0.11399567 prediction 0.426378725831978 Functional Gain - AGFG1 ENSG00000173744 CDS Human protein_coding chr2:228337295 chr2:228337296 synonymous SNV . 0 22 hm5C_associated_SNPs_123035 0 0 1 0 1 AGFG1 chr2:228337304 5'GT 228337304 Upstream 9bp
chr1 17274870 17274870 1 + C T SKCM 17274869 + 17274849 17274889 41 GGAGCAGGAGCTGGAGCAGGCCCGGCGGGAGGCCCAGCGGC GGAGCAGGAGCTGGAGCAGGCTCGGCGGGAGGCCCAGCGGC < 41bp 0.550368141013515 0.763553482080112 0.8957319 0.90173733 prediction 0.426370682133193 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17274869 chr1:17274870 synonymous SNV . 0 22 hm5C_associated_SNPs_123037 0 0 0 0 1 CROCC chr1:17274826 3'AG 17274826 Downstream 45bp
chr1 207850885 207850885 1 + C A UCEC 207850881 + 207850861 207850901 41 TATCATCTGCCTAAAAAACTCAGTCTGGACAAGTGCTAAGG TATCATCTGCCTAAAAAACTCAGTATGGACAAGTGCTAAGG < 41bp 0.324765482262651 0.713184588794983 0.27134532 0.45183605 prediction 0.426369177589966 Functional Gain - CR1L ENSG00000197721 CDS Human protein_coding chr1:207850881 chr1:207850885 synonymous SNV . 0 25 hm5C_associated_SNPs_123038 0 0 1 0 1 CR1L chr1:207850913 5'GT 207850913 Upstream 29bp
chr4 113574346 113574346 1 + T C rs142973597 113574343 + 113574323 113574363 41 GCTCAAGCAGTAATAAATGCCTATACAGAAATTAACAAGAA GCTCAAGCAGTAATAAATGCCTACACAGAAATTAACAAGAA < 41bp 0.554641017940555 0.767822824347907 0.2240743 0.59182477 prediction 0.426363612814703 Functional Gain - LARP7 ENSG00000174720 CDS Human protein_coding chr4:113574343 chr4:113574346 synonymous SNV . 0 24 hm5C_associated_SNPs_123040 0 0 1 0 1 LARP7 chr4:113574392 5'GT 113574392 Upstream 47bp
chr5 179143235 179143235 1 + C T SKCM 179143234 + 179143214 179143254 41 AGGACCCAGAAGACCGGAAGCCCGAGGATTGGGATGAAAGA AGGACCCAGAAGACCGGAAGCTCGAGGATTGGGATGAAAGA < 41bp 0.631666892108199 0.844846473647077 0.23747745 0.27716735 prediction 0.426359163077755 Functional Gain - CANX ENSG00000127022 CDS Human protein_coding chr5:179143234 chr5:179143235 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_123041 0 0 1 0 1 CANX chr5:179143295 5'GT 179143295 Upstream 61bp
chr17 72781695 72781695 1 + C T rs145430683 72781694 + 72781674 72781714 41 GCCCAAGGCATTCGCCACTGCCGGGTGGCTTGTCAGCCTCG GCCCAAGGCATTCGCCACTGCTGGGTGGCTTGTCAGCCTCG < 41bp 0.585243716555711 0.798423239467689 0.89563286 0.46987993 prediction 0.426359045823955 Functional Gain - TMEM104 ENSG00000109066 CDS Human protein_coding chr17:72781694 chr17:72781695 synonymous SNV . 0 22 hm5C_associated_SNPs_123042 0 0 1 0 2 TMEM104 chr17:72781621 3'AG 72781621 Downstream 75bp
chr17 72781695 72781695 1 + C T rs145430683 72781694 + 72781674 72781714 41 GCCCAAGGCATTCGCCACTGCCGGGTGGCTTGTCAGCCTCG GCCCAAGGCATTCGCCACTGCTGGGTGGCTTGTCAGCCTCG < 41bp 0.585243716555711 0.798423239467689 0.89563286 0.46987993 prediction 0.426359045823955 Functional Gain - TMEM104 ENSG00000109066 CDS Human protein_coding chr17:72781694 chr17:72781695 synonymous SNV . 0 22 hm5C_associated_SNPs_123042 0 0 1 0 2 TMEM104 chr17:72781742 5'GT 72781742 Upstream 48bp
chr2 134023948 134023948 1 + C A rs527827187 134023944 + 134023924 134023964 41 AGAGAGGGGTCAAGGAGACCCAGGCGGGAGGCGCGGAAGCA AGAGAGGGGTCAAGGAGACCCAGGAGGGAGGCGCGGAAGCA < 41bp 0.696757344049112 0.909933694813831 0.5432666 0.51491755 prediction 0.426352701529438 Functional Gain - LOC101928161 ENSG00000226953 ncRNA_exonic Human antisense chr2:134023944 chr2:134023948 . . 0 25 hm5C_associated_SNPs_123043 0 0 0 0 1 LOC101928161 chr2:134024008 5'GT 134024008 Upstream 61bp
chr1 24663605 24663605 1 + A G LGG 24663602 + 24663582 24663622 41 AGATATCCTGAAAACCTCCCCGGAACCCCCATGTCCAGAGG AGATATCCTGAAAACCTCCCCGGGACCCCCATGTCCAGAGG < 41bp 0.589469975776284 0.802644476991668 0.06788263 0.260769 prediction 0.426349002430767 Functional Gain - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24663602 chr1:24663605 nonsynonymous SNV 0.560 0 24 hm5C_associated_SNPs_123045 0 0 0 0 2 GRHL3 chr1:24663568 3'AG 24663568 Downstream 38bp
chr1 24663605 24663605 1 + A G LGG 24663602 + 24663582 24663622 41 AGATATCCTGAAAACCTCCCCGGAACCCCCATGTCCAGAGG AGATATCCTGAAAACCTCCCCGGGACCCCCATGTCCAGAGG < 41bp 0.589469975776284 0.802644476991668 0.06788263 0.260769 prediction 0.426349002430767 Functional Gain - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24663602 chr1:24663605 nonsynonymous SNV 0.560 0 24 hm5C_associated_SNPs_123045 0 0 0 0 2 GRHL3 chr1:24663641 5'GT 24663641 Upstream 37bp
chr20 54978560 54978560 1 + A G STAD 54978557 + 54978537 54978577 41 TGGACGCCAGGTGCACCGGACACAGGCTGTGTTTAACCACA TGGACGCCAGGTGCACCGGACACGGGCTGTGTTTAACCACA < 41bp 0.479764095498364 0.713157061341534 0.19759864 0.4884413 prediction 0.426314122683067 Functional Gain - CSTF1 ENSG00000101138 CDS Human protein_coding chr20:54978557 chr20:54978560 nonsynonymous SNV 0.979 1 24 hm5C_associated_SNPs_123050 0 0 1 0 1 CSTF1 chr20:54978524 3'AG 54978524 Downstream 37bp
chr6 155498051 155498051 1 + A G STAD 155498048 + 155498028 155498068 41 GTCCACTTTCAGGACAATCACGGAGTTACTGTAGGGATCAA GTCCACTTTCAGGACAATCACGGGGTTACTGTAGGGATCAA < 41bp 0.47603929428934 0.713153031136644 0.89709014 0.92169553 prediction 0.426306062273288 Functional Gain - TIAM2 ENSG00000146426 CDS Human protein_coding chr6:155498048 chr6:155498051 synonymous SNV . 0 24 hm5C_associated_SNPs_123053 0 0 0 0 1 TIAM2 chr6:155498111 5'GT 155498111 Upstream 61bp
chr22 17640440 17640440 1 + C A rs114024499 17640439 + 17640419 17640459 41 TCGCCCTGTGCCTGCGGATCCCGGTAACATTGCGCGGCAGG TCGCCCTGTGCCTGCGGATCCAGGTAACATTGCGCGGCAGG < 41bp 0.609602364471386 0.822754405717966 0.46242914 0.7946339 prediction 0.42630408249316 Functional Gain - HDHD5-AS1 ENSG00000185837 ncRNA_exonic Human antisense chr22:17640439 chr22:17640440 . . 0 22 hm5C_associated_SNPs_123054 0 0 0 0 1 HDHD5-AS1 chr22:17640441 5'GT 17640441 Upstream 2bp
chr11 209485 209485 1 + C T UCEC 209484 + 209464 209504 41 GTCATCTGGCTGCAGAGTGTCCGAATCCTGTCCCGGGACCG GTCATCTGGCTGCAGAGTGTCTGAATCCTGTCCCGGGACCG < 41bp 0.585468349047701 0.798618956721574 0.181164 0.27004915 prediction 0.426301215347747 Functional Gain - RIC8A ENSG00000177963 CDS Human protein_coding chr11:209484 chr11:209485 stopgain 0.995 1 22 hm5C_associated_SNPs_123055 0 0 1 0 1 RIC8A chr11:209407 3'AG 209407 Downstream 79bp
chr5 175111304 175111304 1 + C T BLCA 175111303 + 175111283 175111323 41 AGTCACGGCCCCCCAGGGAGCCACAGACAGGTAATAGCCCT AGTCACGGCCCCCCAGGGAGCTACAGACAGGTAATAGCCCT < 41bp 0.566668234882685 0.779816385357627 0.19004539 0.21661392 prediction 0.426296300949884 Functional Gain - HRH2 ENSG00000113749 CDS Human protein_coding chr5:175111303 chr5:175111304 synonymous SNV . 0 22 hm5C_associated_SNPs_123058 0 0 0 0 1 HRH2 chr5:175111312 5'GT 175111312 Upstream 9bp
chr9 131476641 131476641 1 + C T LUSC 131476640 + 131476620 131476660 41 AGGCCTCTGACCCTGCCACTCCCAGGTGAGGAGCTCCCTTG AGGCCTCTGACCCTGCCACTCTCAGGTGAGGAGCTCCCTTG < 41bp 0.45560913463822 0.713141905245304 0.16737145 0.039354175 prediction 0.426283810490609 Functional Gain - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131476640 chr9:131476641 nonsynonymous SNV 0.697 1 22 hm5C_associated_SNPs_123062 0 0 1 0 1 PKN3 chr9:131476644 5'GT 131476644 Upstream 4bp
chr10 12198971 12198971 1 + C T UCEC 12198970 + 12198950 12198990 41 GCCACCAGGACGGACAAAGTCCGAGCTTTACGGGAGGCTTT GCCACCAGGACGGACAAAGTCTGAGCTTTACGGGAGGCTTT < 41bp 0.460970305643889 0.713140326948251 0.24588054 0.061967432 prediction 0.426280653896501 Functional Gain - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12198970 chr10:12198971 stopgain 0.998 1 22 hm5C_associated_SNPs_123063 0 0 1 0 2 SEC61A2 chr10:12198906 3'AG 12198906 Downstream 66bp
chr10 12198971 12198971 1 + C T UCEC 12198970 + 12198950 12198990 41 GCCACCAGGACGGACAAAGTCCGAGCTTTACGGGAGGCTTT GCCACCAGGACGGACAAAGTCTGAGCTTTACGGGAGGCTTT < 41bp 0.460970305643889 0.713140326948251 0.24588054 0.061967432 prediction 0.426280653896501 Functional Gain - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12198970 chr10:12198971 stopgain 0.998 1 22 hm5C_associated_SNPs_123063 0 0 1 0 2 SEC61A2 chr10:12199066 5'GT 12199066 Upstream 96bp
chr16 67683410 67683410 1 + C A LUSC 67683409 + 67683389 67683429 41 CTGGGTGCCAGCGTCCTACTCCGGGCCCTAGCCACCAATCC CTGGGTGCCAGCGTCCTACTCAGGGCCCTAGCCACCAATCC < 41bp 0.616848818268222 0.829986973739763 0.93385834 0.9524085 prediction 0.426276310943083 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67683409 chr16:67683410 synonymous SNV . 0 22 hm5C_associated_SNPs_123065 0 0 0 0 1 CARMIL2 chr16:67683350 3'AG 67683350 Downstream 61bp
chr5 23522816 23522816 1 + C G HNSC 23522812 + 23522792 23522832 41 ACAGTGCAGTGGACAAGGGGCACCCCAACCGTTCAGCCCTC ACAGTGCAGTGGACAAGGGGCACCGCAACCGTTCAGCCCTC < 41bp 0.396581520543643 0.713133757198892 0.010281712 0.026091397 prediction 0.426267514397784 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23522812 chr5:23522816 nonsynonymous SNV 0.058 2 25 hm5C_associated_SNPs_123067 0 0 0 0 1 PRDM9 chr5:23522723 3'AG 23522723 Downstream 94bp
chr19 17628119 17628119 1 + C T LUAD 17628118 + 17628098 17628138 41 CATTCCAAGGGGACTCCATCCCGGTTTTCGACCTGCTGATC CATTCCAAGGGGACTCCATCCTGGTTTTCGACCTGCTGATC < 41bp 0.58878206705879 0.801911969327666 0.9093025 0.8167163 prediction 0.426259804537752 Functional Gain - PGLS ENSG00000130313 CDS Human protein_coding chr19:17628118 chr19:17628119 nonsynonymous SNV 0.321 4 22 hm5C_associated_SNPs_123068 0 0 1 0 2 PGLS chr19:17628097 3'AG 17628097 Downstream 23bp
chr19 17628119 17628119 1 + C T LUAD 17628118 + 17628098 17628138 41 CATTCCAAGGGGACTCCATCCCGGTTTTCGACCTGCTGATC CATTCCAAGGGGACTCCATCCTGGTTTTCGACCTGCTGATC < 41bp 0.58878206705879 0.801911969327666 0.9093025 0.8167163 prediction 0.426259804537752 Functional Gain - PGLS ENSG00000130313 CDS Human protein_coding chr19:17628118 chr19:17628119 nonsynonymous SNV 0.321 4 22 hm5C_associated_SNPs_123068 0 0 1 0 2 PGLS chr19:17628198 5'GT 17628198 Upstream 80bp
chr3 32769230 32769230 1 + T C STAD 32769227 + 32769207 32769247 41 AGATATGAGTTGCTGTATAACTGTGGAATTCAGCTTCTTCA AGATATGAGTTGCTGTATAACTGCGGAATTCAGCTTCTTCA < 41bp 0.540440582893307 0.753570329269732 0.118216604 0.31368116 prediction 0.42625949275285 Functional Gain - CNOT10 ENSG00000182973 CDS Human protein_coding chr3:32769227 chr3:32769230 synonymous SNV . 0 24 hm5C_associated_SNPs_123069 0 0 1 0 1 CNOT10 chr3:32769160 3'AG 32769160 Downstream 71bp
chrX 129546420 129546420 1 + C A CESC 129546419 + 129546399 129546439 41 GCAACCATCCTCTTCGTCACCCAGACGCAAGACAGTAAAGG GCAACCATCCTCTTCGTCACCAAGACGCAAGACAGTAAAGG < 41bp 0.61629730467141 0.829425400811366 0.3535455 0.1292409 prediction 0.426256192279911 Functional Gain - RBMX2 ENSG00000134597 CDS Human protein_coding chrX:129546419 chrX:129546420 synonymous SNV . 0 22 hm5C_associated_SNPs_123071 0 0 1 0 1 RBMX2 chrX:129546335 3'AG 129546335 Downstream 86bp
chr15 85384115 85384115 1 + C T GBM 85384114 + 85384094 85384134 41 TGCCCGGCGGAGACATGGCACCCGGGACAGCACGTTGCAGG TGCCCGGCGGAGACATGGCACTCGGGACAGCACGTTGCAGG < 41bp 0.470284085499727 0.713127862458369 0.2508481 0.13685784 prediction 0.426255724916737 Functional Gain - ALPK3 ENSG00000136383 CDS Human protein_coding chr15:85384114 chr15:85384115 synonymous SNV . 0 22 hm5C_associated_SNPs_123072 0 0 0 0 1 ALPK3 chr15:85384163 5'GT 85384163 Upstream 49bp
chrX 49031025 49031025 1 + C T COAD 49031024 + 49031004 49031044 41 CTTTTCCTCACCTGCAGACCCCGCAGATGGCCCGGTGTAGG CTTTTCCTCACCTGCAGACCCTGCAGATGGCCCGGTGTAGG < 41bp 0.600274852231637 0.813393692344847 0.103023976 0.14952335 prediction 0.42623768022642 Functional Gain - PLP2 ENSG00000102007 CDS Human protein_coding chrX:49031024 chrX:49031025 synonymous SNV . 0 22 hm5C_associated_SNPs_123077 0 0 1 0 1 PLP2 chrX:49031021 3'AG 49031021 Downstream 5bp
chr1 15771144 15771144 1 + C T SKCM 15771143 + 15771123 15771163 41 GCTGCAGCAGGGCCTGCAGCCCGTGGTGGATCACGCCACGT GCTGCAGCAGGGCCTGCAGCCTGTGGTGGATCACGCCACGT < 41bp 0.571927607993256 0.785042355165692 0.27186817 0.30277413 prediction 0.426229494344871 Functional Gain - CTRC ENSG00000162438 CDS Human protein_coding chr1:15771143 chr1:15771144 synonymous SNV . 0 22 hm5C_associated_SNPs_123078 0 0 0 0 1 CTRC chr1:15771101 3'AG 15771101 Downstream 44bp
chr13 103498673 103498673 1 + C T LUSC 103498672 + 103498652 103498692 41 CTCCGGGCGGCAGGTCAGCCCCGAAGCGCTGGAAGGGAAGA CTCCGGGCGGCAGGTCAGCCCTGAAGCGCTGGAAGGGAAGA < 41bp 0.559764047283688 0.772872224163497 0.3710966 0.35310727 prediction 0.426216353759619 Functional Gain - ERCC5 ENSG00000134899 CDS Human protein_coding chr13:103498672 chr13:103498673 synonymous SNV . 0 22 hm5C_associated_SNPs_123079 0 0 1 0 1 ERCC5 chr13:103498704 5'GT 103498704 Upstream 32bp
chr17 73206069 73206069 1 + C T LUAD 73206068 + 73206048 73206088 41 CGAAGAGTTGACTGGAAAATCCAGAAAATCTCAGTAAGTTG CGAAGAGTTGACTGGAAAATCTAGAAAATCTCAGTAAGTTG < 41bp 0.597398306326468 0.810500509055995 0.20766747 0.27418453 prediction 0.426204405459053 Functional Gain - NUP85 ENSG00000125450 CDS Human protein_coding chr17:73206068 chr17:73206069 synonymous SNV . 0 22 hm5C_associated_SNPs_123082 0 0 1 0 1 NUP85 chr17:73206080 5'GT 73206080 Upstream 12bp
chr21 40765134 40765134 1 + C T SKCM 40765133 + 40765113 40765153 41 ATTTGGAAGTATTATTCTGTCCCTGTGGCTGTCGTGCCGAG ATTTGGAAGTATTATTCTGTCTCTGTGGCTGTCGTGCCGAG < 41bp 0.458909142548592 0.71308738564194 0.13243553 0.18834475 prediction 0.426174771283881 Functional Gain - WRB ENSG00000182093 CDS Human protein_coding chr21:40765133 chr21:40765134 nonsynonymous SNV 0.808 4 22 hm5C_associated_SNPs_123085 0 0 1 0 2 WRB chr21:40765092 3'AG 40765092 Downstream 43bp
chr21 40765134 40765134 1 + C T SKCM 40765133 + 40765113 40765153 41 ATTTGGAAGTATTATTCTGTCCCTGTGGCTGTCGTGCCGAG ATTTGGAAGTATTATTCTGTCTCTGTGGCTGTCGTGCCGAG < 41bp 0.458909142548592 0.71308738564194 0.13243553 0.18834475 prediction 0.426174771283881 Functional Gain - WRB ENSG00000182093 CDS Human protein_coding chr21:40765133 chr21:40765134 nonsynonymous SNV 0.808 4 22 hm5C_associated_SNPs_123085 0 0 1 0 2 WRB chr21:40765206 5'GT 40765206 Upstream 73bp
chr11 71710328 71710328 1 + A G rs185102044 71710325 + 71710305 71710345 41 TGTGAAGGTGAAGGAGGAAGCAGATGCCTGTTCATATGGAA TGTGAAGGTGAAGGAGGAAGCAGGTGCCTGTTCATATGGAA < 41bp 0.488619270656787 0.713078848438696 0.46372446 0.5564743 prediction 0.426157696877393 Functional Gain - IL18BP ENSG00000137496 UTR5 Human protein_coding chr11:71710325 chr11:71710328 . . 0 24 hm5C_associated_SNPs_123090 0 0 1 0 2 IL18BP chr11:71710305 3'AG 71710305 Downstream 24bp
chr11 71710328 71710328 1 + A G rs185102044 71710325 + 71710305 71710345 41 TGTGAAGGTGAAGGAGGAAGCAGATGCCTGTTCATATGGAA TGTGAAGGTGAAGGAGGAAGCAGGTGCCTGTTCATATGGAA < 41bp 0.488619270656787 0.713078848438696 0.46372446 0.5564743 prediction 0.426157696877393 Functional Gain - IL18BP ENSG00000137496 UTR5 Human protein_coding chr11:71710325 chr11:71710328 . . 0 24 hm5C_associated_SNPs_123090 0 0 1 0 2 IL18BP chr11:71710416 5'GT 71710416 Upstream 89bp
chr19 51647846 51647846 1 + C T SKCM 51647845 + 51647825 51647865 41 CCTCAGTGCTCACCCTCATCCCACAGCCCCAGCACCACGGC CCTCAGTGCTCACCCTCATCCTACAGCCCCAGCACCACGGC < 41bp 0.618779078392115 0.831856274330143 0.012619346 0.031204581 prediction 0.426154391876056 Functional Gain - SIGLEC7 ENSG00000168995 CDS Human protein_coding chr19:51647845 chr19:51647846 nonsynonymous SNV 0.005 3 22 hm5C_associated_SNPs_123091 0 0 0 0 1 SIGLEC7 chr19:51647941 5'GT 51647941 Upstream 96bp
chr19 49686035 49686035 1 + C T SKCM 49686034 + 49686014 49686054 41 CCACAGCGCAGGCACCAAAGCCCCAGCCCTAAAAGGGGGAG CCACAGCGCAGGCACCAAAGCTCCAGCCCTAAAAGGGGGAG < 41bp 0.616186267742477 0.829250625345147 0.20669234 0.39743218 prediction 0.42612871520534 Functional Gain - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49686034 chr19:49686035 synonymous SNV . 0 22 hm5C_associated_SNPs_123094 0 0 0 0 1 TRPM4 chr19:49686124 5'GT 49686124 Upstream 90bp
chr3 189597893 189597893 1 + C T GBM 189597892 + 189597872 189597912 41 AGGAATGAGCTTGTGGAGCCCCGGAGAGAAACTCCAAAACA AGGAATGAGCTTGTGGAGCCCTGGAGAGAAACTCCAAAACA < 41bp 0.526274625403093 0.739324228942846 0.5401132 0.19172567 prediction 0.426099207079505 Functional Gain - TP63 ENSG00000073282 CDS Human protein_coding chr3:189597892 chr3:189597893 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_123098 0 0 0 0 1 TP63 chr3:189597853 3'AG 189597853 Downstream 41bp
chr1 19992927 19992927 1 + C T UCEC 19992926 + 19992906 19992946 41 GCAGGTGGCCTCCCTCACCACCGGCATGGCCAGTCAGGCCT GCAGGTGGCCTCCCTCACCACTGGCATGGCCAGTCAGGCCT < 41bp 0.510891389247174 0.723938908132322 0.21007091 0.3537411 prediction 0.426095037770297 Functional Gain - HTR6 ENSG00000158748 CDS Human protein_coding chr1:19992926 chr1:19992927 synonymous SNV . 0 22 hm5C_associated_SNPs_123100 0 0 0 0 1 HTR6 chr1:19992960 5'GT 19992960 Upstream 34bp
chr4 4864457 4864457 1 + C T LIHC 4864456 + 4864436 4864476 41 AGCCCCCCAGCCTGCACCCTCCGCAAACACAAGACGAACCG AGCCCCCCAGCCTGCACCCTCTGCAAACACAAGACGAACCG < 41bp 0.620866760256787 0.833914113540578 0.1161367 0.60013497 prediction 0.426094706567581 Functional Gain - MSX1 ENSG00000163132 CDS Human protein_coding chr4:4864456 chr4:4864457 nonsynonymous SNV 0.996 5 22 hm5C_associated_SNPs_123101 0 0 1 0 1 MSX1 chr4:4864428 3'AG 4864428 Downstream 30bp
chr9 95841807 95841807 1 + C T STAD 95841806 + 95841786 95841826 41 GGACTTGGAGACGGTGCAGGCCGCATACCTTGGCCTCAAGC GGACTTGGAGACGGTGCAGGCTGCATACCTTGGCCTCAAGC < 41bp 0.623651931669608 0.836687012732995 0.05520746 0.035767615 prediction 0.426070162126774 Functional Gain - SUSD3 ENSG00000157303 CDS Human protein_coding chr9:95841806 chr9:95841807 synonymous SNV . 0 22 hm5C_associated_SNPs_123110 0 0 0 0 2 SUSD3 chr9:95841753 3'AG 95841753 Downstream 55bp
chr9 95841807 95841807 1 + C T STAD 95841806 + 95841786 95841826 41 GGACTTGGAGACGGTGCAGGCCGCATACCTTGGCCTCAAGC GGACTTGGAGACGGTGCAGGCTGCATACCTTGGCCTCAAGC < 41bp 0.623651931669608 0.836687012732995 0.05520746 0.035767615 prediction 0.426070162126774 Functional Gain - SUSD3 ENSG00000157303 CDS Human protein_coding chr9:95841806 chr9:95841807 synonymous SNV . 0 22 hm5C_associated_SNPs_123110 0 0 0 0 2 SUSD3 chr9:95841884 5'GT 95841884 Upstream 78bp
chr11 65392959 65392959 1 + C T HNSC 65392958 + 65392938 65392978 41 CCGAGCCCCCGGACCCCTTGCCGGACAAGATGCGCCAGTCG CCGAGCCCCCGGACCCCTTGCTGGACAAGATGCGCCAGTCG < 41bp 0.590018303080284 0.803048671452888 0.59970695 0.32478648 prediction 0.426060736745209 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65392958 chr11:65392959 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_123112 0 0 1 0 2 PCNX3 chr11:65392876 3'AG 65392876 Downstream 84bp
chr11 65392959 65392959 1 + C T HNSC 65392958 + 65392938 65392978 41 CCGAGCCCCCGGACCCCTTGCCGGACAAGATGCGCCAGTCG CCGAGCCCCCGGACCCCTTGCTGGACAAGATGCGCCAGTCG < 41bp 0.590018303080284 0.803048671452888 0.59970695 0.32478648 prediction 0.426060736745209 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65392958 chr11:65392959 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_123112 0 0 1 0 2 PCNX3 chr11:65392981 5'GT 65392981 Upstream 23bp
chr10 4877971 4877971 1 + C G LUAD 4877970 + 4877950 4877990 41 CGAGAGCAACATGGTTATTCCCAGTGACACGGACTTCCTGG CGAGAGCAACATGGTTATTCCGAGTGACACGGACTTCCTGG < 41bp 0.397121876772914 0.713022325484196 0.19407067 0.87791574 prediction 0.426044650968393 Functional Gain - AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4877970 chr10:4877971 synonymous SNV . 0 22 hm5C_associated_SNPs_123114 0 0 1 0 1 AKR1E2 chr10:4878001 5'GT 4878001 Upstream 31bp
chr11 34162732 34162732 1 + C T SKCM 34162731 + 34162711 34162751 41 CAGTTGATGGGACTTTTCAACCGGATCATCCGCAAAGTTGT CAGTTGATGGGACTTTTCAACTGGATCATCCGCAAAGTTGT < 41bp 0.6143251529916 0.827341311864899 0.3148619 0.10963842 prediction 0.426032317746599 Functional Gain - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34162731 chr11:34162732 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_123115 0 0 1 0 2 NAT10 chr11:34162636 3'AG 34162636 Downstream 97bp
chr11 34162732 34162732 1 + C T SKCM 34162731 + 34162711 34162751 41 CAGTTGATGGGACTTTTCAACCGGATCATCCGCAAAGTTGT CAGTTGATGGGACTTTTCAACTGGATCATCCGCAAAGTTGT < 41bp 0.6143251529916 0.827341311864899 0.3148619 0.10963842 prediction 0.426032317746599 Functional Gain - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34162731 chr11:34162732 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_123115 0 0 1 0 2 NAT10 chr11:34162755 5'GT 34162755 Upstream 24bp
chr13 47262041 47262041 1 + C T LGG 47262040 + 47262020 47262060 41 TATCTGAGCATACAAGCATGCCAGATTAAGACAGCTGACTC TATCTGAGCATACAAGCATGCTAGATTAAGACAGCTGACTC < 41bp 0.451849289922785 0.71301272724649 0.19217709 0.087891966 prediction 0.42602545449298 Functional Gain - LRCH1 ENSG00000136141 CDS Human protein_coding chr13:47262040 chr13:47262041 stopgain 1.000 1 22 hm5C_associated_SNPs_123118 0 0 0 0 2 LRCH1 chr13:47261987 3'AG 47261987 Downstream 55bp
chr13 47262041 47262041 1 + C T LGG 47262040 + 47262020 47262060 41 TATCTGAGCATACAAGCATGCCAGATTAAGACAGCTGACTC TATCTGAGCATACAAGCATGCTAGATTAAGACAGCTGACTC < 41bp 0.451849289922785 0.71301272724649 0.19217709 0.087891966 prediction 0.42602545449298 Functional Gain - LRCH1 ENSG00000136141 CDS Human protein_coding chr13:47262040 chr13:47262041 stopgain 1.000 1 22 hm5C_associated_SNPs_123118 0 0 0 0 2 LRCH1 chr13:47262114 5'GT 47262114 Upstream 74bp
chr2 29240672 29240672 1 + C A rs141303160 29240671 + 29240651 29240691 41 TCCACAGGCCTCCTTCCCCTCCGGGGCAGCGGGACACTGTC TCCACAGGCCTCCTTCCCCTCAGGGGCAGCGGGACACTGTC < 41bp 0.440520864788702 0.713005928069567 0.90352833 0.9292902 prediction 0.426011856139133 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29240671 chr2:29240672 synonymous SNV . 0 22 hm5C_associated_SNPs_123121 0 0 0 0 1 TOGARAM2 chr2:29240658 3'AG 29240658 Downstream 15bp
chr11 396684 396684 1 + C A LGG 396683 + 396663 396703 41 GGGCCTGAGTGGGGACAAGACCTCGGTGAGCGATGGGCCCA GGGCCTGAGTGGGGACAAGACATCGGTGAGCGATGGGCCCA < 41bp 0.446919711774306 0.713000777493184 0.7570535 0.5773701 prediction 0.426001554986368 Functional Gain - PKP3 ENSG00000184363 CDS Human protein_coding chr11:396683 chr11:396684 synonymous SNV . 0 22 hm5C_associated_SNPs_123123 0 0 1 0 2 PKP3 chr11:396608 3'AG 396608 Downstream 77bp
chr11 396684 396684 1 + C A LGG 396683 + 396663 396703 41 GGGCCTGAGTGGGGACAAGACCTCGGTGAGCGATGGGCCCA GGGCCTGAGTGGGGACAAGACATCGGTGAGCGATGGGCCCA < 41bp 0.446919711774306 0.713000777493184 0.7570535 0.5773701 prediction 0.426001554986368 Functional Gain - PKP3 ENSG00000184363 CDS Human protein_coding chr11:396683 chr11:396684 synonymous SNV . 0 22 hm5C_associated_SNPs_123123 0 0 1 0 2 PKP3 chr11:396687 5'GT 396687 Upstream 4bp
chr5 177468724 177468724 1 + C T LUAD 177468723 + 177468703 177468743 41 AAGACCTGGAGGAGCATCTGCCAGGGCAGACAGTCTCTGAG AAGACCTGGAGGAGCATCTGCTAGGGCAGACAGTCTCTGAG < 41bp 0.585459815703104 0.798455144557746 0.9000149 0.42358586 prediction 0.425990657709284 Functional Gain - FAM153C ENSG00000204677 CDS Human protein_coding chr5:177468723 chr5:177468724 nonsynonymous SNV 0.039 3 22 hm5C_associated_SNPs_123125 0 0 0 0 2 FAM153C chr5:177468694 3'AG 177468694 Downstream 31bp
chr5 177468724 177468724 1 + C T LUAD 177468723 + 177468703 177468743 41 AAGACCTGGAGGAGCATCTGCCAGGGCAGACAGTCTCTGAG AAGACCTGGAGGAGCATCTGCTAGGGCAGACAGTCTCTGAG < 41bp 0.585459815703104 0.798455144557746 0.9000149 0.42358586 prediction 0.425990657709284 Functional Gain - FAM153C ENSG00000204677 CDS Human protein_coding chr5:177468723 chr5:177468724 nonsynonymous SNV 0.039 3 22 hm5C_associated_SNPs_123125 0 0 0 0 2 FAM153C chr5:177468764 5'GT 177468764 Upstream 41bp
chr4 6882580 6882580 1 + C A rs149493190 6882579 + 6882559 6882599 41 GGAGCAAAGTCAGATGGCTTCCGCGGAAAGATGTGCTCCAG GGAGCAAAGTCAGATGGCTTCAGCGGAAAGATGTGCTCCAG < 41bp 0.606902269172747 0.819896033024489 0.42285222 0.54572254 prediction 0.425987527703483 Functional Gain - KIAA0232 ENSG00000170871 CDS Human protein_coding chr4:6882579 chr4:6882580 nonsynonymous SNV 0.076 0 22 hm5C_associated_SNPs_123126 0 0 0 0 1 KIAA0232 chr4:6882514 3'AG 6882514 Downstream 67bp
chr10 99329964 99329964 1 + C T READ 99329963 + 99329943 99329983 41 CCATCTACTGCCTGTCACCGCCGGTGAACCTGCTGCTGGAG CCATCTACTGCCTGTCACCGCTGGTGAACCTGCTGCTGGAG < 41bp 0.480873334077217 0.712993123865219 0.89508474 0.61430204 prediction 0.425986247730438 Functional Gain - UBTD1 ENSG00000165886 CDS Human protein_coding chr10:99329963 chr10:99329964 nonsynonymous SNV 0.497 5 22 hm5C_associated_SNPs_123128 0 0 0 0 1 UBTD1 chr10:99329895 3'AG 99329895 Downstream 70bp
chr2 27322645 27322645 1 - A G rs189674797 27322647 - 27322627 27322667 41 GCAGCCGCAATGGTAGTCTCCATGGTGTGTGAGGAGCCGGC GCAGCCGCAATGGTAGTCTCCACGGTGTGTGAGGAGCCGGC < 41bp 0.545177547151145 0.758159191245163 0.26843446 0.4536148 prediction 0.425963288188036 Functional Gain - CGREF1;KHK ENSG00000138028;ENSG00000138030 UTR3 Human protein_coding chr2:27322647 chr2:27322645 . . 0 23 hm5C_associated_SNPs_123132 1 0 0 4 1 CGREF1 chr2:27322708 3'AG 27322708 Downstream 64bp
chr2 47238537 47238537 1 + T C HNSC 47238535 + 47238515 47238555 41 CCCTCGGACCCCACCGTGCCCCTGATGGCCGCGAAGGTCTG CCCTCGGACCCCACCGTGCCCCCGATGGCCGCGAAGGTCTG < 41bp 0.432096036728738 0.712976524819306 0.088709265 0.10618523 prediction 0.425953049638612 Functional Gain - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47238535 chr2:47238537 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_123133 0 0 1 0 2 TTC7A chr2:47238470 3'AG 47238470 Downstream 68bp
chr2 47238537 47238537 1 + T C HNSC 47238535 + 47238515 47238555 41 CCCTCGGACCCCACCGTGCCCCTGATGGCCGCGAAGGTCTG CCCTCGGACCCCACCGTGCCCCCGATGGCCGCGAAGGTCTG < 41bp 0.432096036728738 0.712976524819306 0.088709265 0.10618523 prediction 0.425953049638612 Functional Gain - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47238535 chr2:47238537 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_123133 0 0 1 0 2 TTC7A chr2:47238574 5'GT 47238574 Upstream 38bp
chr8 99169923 99169923 1 + C A rs111665863 99169922 + 99169902 99169942 41 TCGGGGAGGCCGGCGAGCTCCCGGCAGAGGCCAGCAAGGAT TCGGGGAGGCCGGCGAGCTCCAGGCAGAGGCCAGCAAGGAT < 41bp 0.458575325851449 0.712973257951612 0.69014263 0.75073516 prediction 0.425946515903224 Functional Gain - POP1 ENSG00000104356 CDS Human protein_coding chr8:99169922 chr8:99169923 synonymous SNV . 0 22 hm5C_associated_SNPs_123134 0 0 0 0 1 POP1 chr8:99169845 3'AG 99169845 Downstream 79bp
chr4 56212692 56212692 1 + C T LUAD 56212691 + 56212671 56212711 41 GTGTGGGGAGCCGTCGCGCCCCGCCGCCTGCCGAGCCTTTG GTGTGGGGAGCCGTCGCGCCCTGCCGCCTGCCGAGCCTTTG < 41bp 0.545821521189537 0.758792892573184 0.22440764 0.31404334 prediction 0.425942742767294 Functional Gain - SRD5A3 ENSG00000128039 CDS Human protein_coding chr4:56212691 chr4:56212692 synonymous SNV . 0 22 hm5C_associated_SNPs_123136 0 0 1 0 1 SRD5A3 chr4:56212724 5'GT 56212724 Upstream 33bp
chr2 206617651 206617651 1 + C T COAD 206617650 + 206617630 206617670 41 TATGACCATGCCAAGTGGCTCCGGACCACCTGGGCCAGCAG TATGACCATGCCAAGTGGCTCTGGACCACCTGGGCCAGCAG < 41bp 0.617998625855021 0.830962931260291 0.89838153 0.9022484 prediction 0.42592861081054 Functional Gain - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206617650 chr2:206617651 nonsynonymous SNV 0.984 1 22 hm5C_associated_SNPs_123138 0 0 0 0 2 NRP2 chr2:206617559 3'AG 206617559 Downstream 93bp
chr2 206617651 206617651 1 + C T COAD 206617650 + 206617630 206617670 41 TATGACCATGCCAAGTGGCTCCGGACCACCTGGGCCAGCAG TATGACCATGCCAAGTGGCTCTGGACCACCTGGGCCAGCAG < 41bp 0.617998625855021 0.830962931260291 0.89838153 0.9022484 prediction 0.42592861081054 Functional Gain - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206617650 chr2:206617651 nonsynonymous SNV 0.984 1 22 hm5C_associated_SNPs_123138 0 0 0 0 2 NRP2 chr2:206617699 5'GT 206617699 Upstream 49bp
chr2 54365829 54365829 1 + C T rs115587659 54365828 + 54365808 54365848 41 GGTTGGCTGGGTGAAGAATACCAGCAAAGGCACCGTGACAG GGTTGGCTGGGTGAAGAATACTAGCAAAGGCACCGTGACAG < 41bp 0.595836286210321 0.808798384895003 0.4238925 0.23168439 prediction 0.425924197369363 Functional Gain - ACYP2 ENSG00000170634 CDS Human protein_coding chr2:54365828 chr2:54365829 synonymous SNV . 0 22 hm5C_associated_SNPs_123141 0 0 1 0 2 ACYP2 chr2:54365776 3'AG 54365776 Downstream 54bp
chr2 54365829 54365829 1 + C T rs115587659 54365828 + 54365808 54365848 41 GGTTGGCTGGGTGAAGAATACCAGCAAAGGCACCGTGACAG GGTTGGCTGGGTGAAGAATACTAGCAAAGGCACCGTGACAG < 41bp 0.595836286210321 0.808798384895003 0.4238925 0.23168439 prediction 0.425924197369363 Functional Gain - ACYP2 ENSG00000170634 CDS Human protein_coding chr2:54365828 chr2:54365829 synonymous SNV . 0 22 hm5C_associated_SNPs_123141 0 0 1 0 2 ACYP2 chr2:54365885 5'GT 54365885 Upstream 57bp
chr19 2810714 2810714 1 + C T rs150480995 2810713 + 2810693 2810733 41 GCAGACGGACGCAGACCCCGCCGAGGAGTATGCGCGGCTCT GCAGACGGACGCAGACCCCGCTGAGGAGTATGCGCGGCTCT < 41bp 0.574081882643883 0.787038966812624 0.8599739 0.74208033 prediction 0.425914168337483 Functional Gain - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2810713 chr19:2810714 synonymous SNV . 0 22 hm5C_associated_SNPs_123143 0 0 1 0 2 THOP1 chr19:2810638 3'AG 2810638 Downstream 77bp
chr19 2810714 2810714 1 + C T rs150480995 2810713 + 2810693 2810733 41 GCAGACGGACGCAGACCCCGCCGAGGAGTATGCGCGGCTCT GCAGACGGACGCAGACCCCGCTGAGGAGTATGCGCGGCTCT < 41bp 0.574081882643883 0.787038966812624 0.8599739 0.74208033 prediction 0.425914168337483 Functional Gain - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2810713 chr19:2810714 synonymous SNV . 0 22 hm5C_associated_SNPs_123143 0 0 1 0 2 THOP1 chr19:2810766 5'GT 2810766 Upstream 53bp
chr4 5755644 5755644 1 + C T STAD 5755643 + 5755623 5755663 41 AGGCCCAGCCGACTGCTGACCCGGAAAAGTTTCTCGAGGTG AGGCCCAGCCGACTGCTGACCTGGAAAAGTTTCTCGAGGTG < 41bp 0.581655966149821 0.794604119103147 0.49261072 0.34560764 prediction 0.425896305906652 Functional Gain - EVC ENSG00000072840 CDS Human protein_coding chr4:5755643 chr4:5755644 nonsynonymous SNV 0.002 2 22 hm5C_associated_SNPs_123147 0 0 1 0 1 EVC chr4:5755660 5'GT 5755660 Upstream 17bp
chr9 124074692 124074692 1 + C T UCEC 124074691 + 124074671 124074711 41 ACACAGGTGTCCAAGGGCATCCGGGACAACGAGCGGAGTGG ACACAGGTGTCCAAGGGCATCTGGGACAACGAGCGGAGTGG < 41bp 0.580157496228903 0.793097357965073 0.80796087 0.40834105 prediction 0.425879723472342 Functional Gain - GSN ENSG00000148180 CDS Human protein_coding chr9:124074691 chr9:124074692 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_123150 0 0 1 0 2 GSN chr9:124074617 3'AG 124074617 Downstream 76bp
chr9 124074692 124074692 1 + C T UCEC 124074691 + 124074671 124074711 41 ACACAGGTGTCCAAGGGCATCCGGGACAACGAGCGGAGTGG ACACAGGTGTCCAAGGGCATCTGGGACAACGAGCGGAGTGG < 41bp 0.580157496228903 0.793097357965073 0.80796087 0.40834105 prediction 0.425879723472342 Functional Gain - GSN ENSG00000148180 CDS Human protein_coding chr9:124074691 chr9:124074692 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_123150 0 0 1 0 2 GSN chr9:124074766 5'GT 124074766 Upstream 75bp
chrX 10098133 10098133 1 + C A GBM 10098132 + 10098112 10098152 41 CTCAGGCAGGGCCTTACAGCCCCGAGAAATTTCAGCCCTCG CTCAGGCAGGGCCTTACAGCCACGAGAAATTTCAGCCCTCG < 41bp 0.630950940872796 0.843884220399899 0.20999506 0.5741942 prediction 0.425866559054207 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10098132 chrX:10098133 nonsynonymous SNV 0.160 1 22 hm5C_associated_SNPs_123151 0 0 0 0 1 WWC3 chrX:10098161 5'GT 10098161 Upstream 29bp
chr13 29252193 29252193 1 + T C UCEC 29252191 + 29252171 29252211 41 GATCCATCACAAAGCGAAGTCATGGGAGAGCCACACTTGAT GATCCATCACAAAGCGAAGTCACGGGAGAGCCACACTTGAT < 41bp 0.608699012097869 0.821629109600207 0.38633603 0.29481542 prediction 0.425860195004677 Functional Gain - POMP ENSG00000132963 CDS Human protein_coding chr13:29252191 chr13:29252193 nonsynonymous SNV 0.992 2 23 hm5C_associated_SNPs_123152 0 0 1 0 1 POMP chr13:29252172 3'AG 29252172 Downstream 22bp
chr1 113238119 113238119 1 + C T SKCM 113238118 + 113238098 113238138 41 GACCTACTCTGTCAAAGGCTCCGGGTCCACCTTCCTAGCTC GACCTACTCTGTCAAAGGCTCTGGGTCCACCTTCCTAGCTC < 41bp 0.600220353657413 0.813146626593715 0.9026545 0.93059623 prediction 0.425852545872605 Functional Gain - MOV10 ENSG00000155363 CDS Human protein_coding chr1:113238118 chr1:113238119 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_123153 0 0 1 0 2 MOV10 chr1:113238038 3'AG 113238038 Downstream 82bp
chr1 113238119 113238119 1 + C T SKCM 113238118 + 113238098 113238138 41 GACCTACTCTGTCAAAGGCTCCGGGTCCACCTTCCTAGCTC GACCTACTCTGTCAAAGGCTCTGGGTCCACCTTCCTAGCTC < 41bp 0.600220353657413 0.813146626593715 0.9026545 0.93059623 prediction 0.425852545872605 Functional Gain - MOV10 ENSG00000155363 CDS Human protein_coding chr1:113238118 chr1:113238119 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_123153 0 0 1 0 2 MOV10 chr1:113238196 5'GT 113238196 Upstream 78bp
chr2 121104205 121104205 1 + C A rs200993826 121104204 + 121104184 121104224 41 TTCCGAAATCATCAGCTTCGCCGAGACAGGTGGGTCCGGCC TTCCGAAATCATCAGCTTCGCAGAGACAGGTGGGTCCGGCC < 41bp 0.606892343339728 0.819814880230954 0.5871365 0.88184786 prediction 0.425845073782451 Functional Gain - INHBB ENSG00000163083 CDS Human protein_coding chr2:121104204 chr2:121104205 synonymous SNV . 0 22 hm5C_associated_SNPs_123155 0 0 0 0 1 INHBB chr2:121104212 5'GT 121104212 Upstream 8bp
chr17 4794871 4794871 1 + C A SKCM 4794867 + 4794847 4794887 41 TTCCCAGCCTCCCATGACCCCGACCCTGCCATCCCCGCACC TTCCCAGCCTCCCATGACCCCGACACTGCCATCCCCGCACC < 41bp 0.291071798318277 0.712915599236926 0.19884396 0.24234006 prediction 0.425831198473853 Functional Gain - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4794867 chr17:4794871 nonsynonymous SNV 0.894 1 25 hm5C_associated_SNPs_123156 0 0 0 0 1 MINK1 chr17:4794811 3'AG 4794811 Downstream 61bp
chr17 72758289 72758289 1 + C T BLCA 72758288 + 72758268 72758308 41 CCGGCTGAGGCTTCAGGGCTCCGGGCCCAGGATCGCATTGT CCGGCTGAGGCTTCAGGGCTCTGGGCCCAGGATCGCATTGT < 41bp 0.572746012493558 0.785658924411165 0.8727524 0.8371384 prediction 0.425825823835214 Functional Gain - SLC9A3R1 ENSG00000109062 CDS Human protein_coding chr17:72758288 chr17:72758289 nonsynonymous SNV 0.924 3 22 hm5C_associated_SNPs_123157 0 0 1 0 1 SLC9A3R1 chr17:72758312 5'GT 72758312 Upstream 24bp
chr21 42647329 42647329 1 + C T HNSC 42647328 + 42647308 42647348 41 TGCTGCAGTGTCTGAAATTTCCGGGCCTTTCTCAACAGAGG TGCTGCAGTGTCTGAAATTTCTGGGCCTTTCTCAACAGAGG < 41bp 0.573059722920335 0.7859663629008 0.8790547 0.6533217 prediction 0.425813279960932 Functional Gain - BACE2 ENSG00000182240 CDS Human protein_coding chr21:42647328 chr21:42647329 nonsynonymous SNV 0.821 1 22 hm5C_associated_SNPs_123163 0 0 1 0 1 BACE2 chr21:42647298 3'AG 42647298 Downstream 32bp
chr16 76556003 76556003 1 + C A LUAD 76555999 + 76555979 76556019 41 TTTTGAAATCTCAGTGCAGTCACCCACCCACTTCAACGACA TTTTGAAATCTCAGTGCAGTCACCAACCCACTTCAACGACA < 41bp 0.281084479866832 0.71290377509227 0.061591506 0.10704404 prediction 0.42580755018454 Functional Gain - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76555999 chr16:76556003 synonymous SNV . 0 25 hm5C_associated_SNPs_123165 0 0 0 0 1 CNTNAP4 chr16:76555936 3'AG 76555936 Downstream 68bp
chrX 64718935 64718935 1 + C T BLCA 64718934 + 64718914 64718954 41 ATTCTTGTCTTCACACCATCCCGAAGAGTCCAAGGCAGGAG ATTCTTGTCTTCACACCATCCTGAAGAGTCCAAGGCAGGAG < 41bp 0.450691088681617 0.712900443808846 0.07934794 0.044154197 prediction 0.425800887617691 Functional Gain - ZC3H12B ENSG00000102053 CDS Human protein_coding chrX:64718934 chrX:64718935 stopgain 0.994 1 22 hm5C_associated_SNPs_123167 0 0 0 0 1 ZC3H12B chrX:64718879 3'AG 64718879 Downstream 57bp
chr14 53175072 53175072 1 + A G LGG 53175069 + 53175049 53175089 41 TACCAAGCAGTATGAAAAGTCTGAAAATGATCTGAAGGCCC TACCAAGCAGTATGAAAAGTCTGGAAATGATCTGAAGGCCC < 41bp 0.523205403035034 0.736105085935395 0.04955575 0.23592481 prediction 0.425799365800721 Functional Gain - PSMC6 ENSG00000100519 CDS Human protein_coding chr14:53175069 chr14:53175072 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_123168 0 0 1 0 2 PSMC6 chr14:53175027 3'AG 53175027 Downstream 46bp
chr14 53175072 53175072 1 + A G LGG 53175069 + 53175049 53175089 41 TACCAAGCAGTATGAAAAGTCTGAAAATGATCTGAAGGCCC TACCAAGCAGTATGAAAAGTCTGGAAATGATCTGAAGGCCC < 41bp 0.523205403035034 0.736105085935395 0.04955575 0.23592481 prediction 0.425799365800721 Functional Gain - PSMC6 ENSG00000100519 CDS Human protein_coding chr14:53175069 chr14:53175072 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_123168 0 0 1 0 2 PSMC6 chr14:53175106 5'GT 53175106 Upstream 35bp
chr22 50319131 50319131 1 + C T LUSC 50319130 + 50319110 50319150 41 ACGAAAACTGCTACAATACTCCAGGGAGCTACGTCTGTGTG ACGAAAACTGCTACAATACTCTAGGGAGCTACGTCTGTGTG < 41bp 0.571649658021283 0.784539397772896 0.8890036 0.69492906 prediction 0.425779479503227 Functional Gain - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50319130 chr22:50319131 nonsynonymous SNV 0.111 1 22 hm5C_associated_SNPs_123171 0 0 1 0 2 CRELD2 chr22:50319065 3'AG 50319065 Downstream 67bp
chr22 50319131 50319131 1 + C T LUSC 50319130 + 50319110 50319150 41 ACGAAAACTGCTACAATACTCCAGGGAGCTACGTCTGTGTG ACGAAAACTGCTACAATACTCTAGGGAGCTACGTCTGTGTG < 41bp 0.571649658021283 0.784539397772896 0.8890036 0.69492906 prediction 0.425779479503227 Functional Gain - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50319130 chr22:50319131 nonsynonymous SNV 0.111 1 22 hm5C_associated_SNPs_123171 0 0 1 0 2 CRELD2 chr22:50319205 5'GT 50319205 Upstream 75bp
chr1 234452411 234452411 1 + A G STAD 234452408 + 234452388 234452428 41 TGACCTACGCTGATGGCTTCCACAGCCACTCCGTCATCGGC TGACCTACGCTGATGGCTTCCACGGCCACTCCGTCATCGGC < 41bp 0.466549587179969 0.712884619255538 0.061330765 0.10442886 prediction 0.425769238511077 Functional Gain - SLC35F3 ENSG00000183780 CDS Human protein_coding chr1:234452408 chr1:234452411 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_123173 0 0 0 0 2 SLC35F3 chr1:234452348 3'AG 234452348 Downstream 64bp
chr1 234452411 234452411 1 + A G STAD 234452408 + 234452388 234452428 41 TGACCTACGCTGATGGCTTCCACAGCCACTCCGTCATCGGC TGACCTACGCTGATGGCTTCCACGGCCACTCCGTCATCGGC < 41bp 0.466549587179969 0.712884619255538 0.061330765 0.10442886 prediction 0.425769238511077 Functional Gain - SLC35F3 ENSG00000183780 CDS Human protein_coding chr1:234452408 chr1:234452411 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_123173 0 0 0 0 2 SLC35F3 chr1:234452473 5'GT 234452473 Upstream 63bp
chr18 3277816 3277816 1 + T C SKCM 3277813 + 3277793 3277833 41 TGCTGACAACCATGGGGGATCGGTTTACAGATGAGGAAGTG TGCTGACAACCATGGGGGATCGGCTTACAGATGAGGAAGTG < 41bp 0.502659925170491 0.715540546509083 0.13806698 0.194974 prediction 0.425761242677184 Functional Gain - MYL12B ENSG00000118680 CDS Human protein_coding chr18:3277813 chr18:3277816 nonsynonymous SNV 0.889 2 24 hm5C_associated_SNPs_123175 0 0 1 0 1 MYL12B chr18:3277763 3'AG 3277763 Downstream 54bp
chr3 111672823 111672823 1 + C A rs530126533 111672819 + 111672799 111672839 41 GTAACAGCTGTGGAAGTGTGCTCCCTCCCTCACTGGCAGCC GTAACAGCTGTGGAAGTGTGCTCCATCCCTCACTGGCAGCC < 41bp 0.284394107946815 0.712879241575604 0.11403361 0.62632257 prediction 0.425758483151208 Functional Gain - PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111672819 chr3:111672823 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_123176 0 0 1 0 2 PHLDB2 chr3:111672777 3'AG 111672777 Downstream 47bp
chr3 111672823 111672823 1 + C A rs530126533 111672819 + 111672799 111672839 41 GTAACAGCTGTGGAAGTGTGCTCCCTCCCTCACTGGCAGCC GTAACAGCTGTGGAAGTGTGCTCCATCCCTCACTGGCAGCC < 41bp 0.284394107946815 0.712879241575604 0.11403361 0.62632257 prediction 0.425758483151208 Functional Gain - PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111672819 chr3:111672823 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_123176 0 0 1 0 2 PHLDB2 chr3:111672876 5'GT 111672876 Upstream 54bp
chr20 30662484 30662484 1 + A G SKCM 30662481 + 30662461 30662501 41 CCCGGAAGGAGGGCTACATCCCAAGCAACTATGTCGCCCGC CCCGGAAGGAGGGCTACATCCCAGGCAACTATGTCGCCCGC < 41bp 0.607939249405894 0.820817185863447 0.18537086 0.57646024 prediction 0.425755872915106 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30662481 chr20:30662484 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_123177 0 0 0 0 2 HCK chr20:30662426 3'AG 30662426 Downstream 59bp
chr20 30662484 30662484 1 + A G SKCM 30662481 + 30662461 30662501 41 CCCGGAAGGAGGGCTACATCCCAAGCAACTATGTCGCCCGC CCCGGAAGGAGGGCTACATCCCAGGCAACTATGTCGCCCGC < 41bp 0.607939249405894 0.820817185863447 0.18537086 0.57646024 prediction 0.425755872915106 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30662481 chr20:30662484 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_123177 0 0 0 0 2 HCK chr20:30662524 5'GT 30662524 Upstream 41bp
chr17 4925966 4925966 1 + C T BRCA 4925965 + 4925945 4925985 41 GAGCTGCAGGCCCTGCGGGACCGCATGCTCCGCATGGAGAG GAGCTGCAGGCCCTGCGGGACTGCATGCTCCGCATGGAGAG < 41bp 0.451950375973199 0.712875553573143 0.11110821 0.16311851 prediction 0.425751107146286 Functional Gain - KIF1C ENSG00000129250 CDS Human protein_coding chr17:4925965 chr17:4925966 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_123178 0 0 1 0 1 KIF1C chr17:4926004 5'GT 4926004 Upstream 39bp
chr4 159780248 159780248 1 + T C rs547291618 159780245 + 159780225 159780265 41 TTCAGCTTGGCTGAAGAAACCTGTAGCTCTAATCCAGCTAT TTCAGCTTGGCTGAAGAAACCTGCAGCTCTAATCCAGCTAT < 41bp 0.487545136773216 0.712871702693248 0.03911233 0.10066086 prediction 0.425743405386496 Functional Gain - FNIP2 ENSG00000052795 CDS Human protein_coding chr4:159780245 chr4:159780248 synonymous SNV . 0 24 hm5C_associated_SNPs_123180 0 0 1 0 1 FNIP2 chr4:159780209 3'AG 159780209 Downstream 40bp
chr18 61225609 61225609 1 + C T SKCM 61225608 + 61225588 61225628 41 CTACACTTCAACGAATTTTCCCAGAATGAAAGCAAAGAACC CTACACTTCAACGAATTTTCCTAGAATGAAAGCAAAGAACC < 41bp 0.584549406160679 0.797419830037868 0.07297009 0.09665668 prediction 0.425740847754376 Functional Gain - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61225608 chr18:61225609 stopgain 0.094 0 22 hm5C_associated_SNPs_123182 0 0 0 0 2 SERPINB12 chr18:61225585 3'AG 61225585 Downstream 25bp
chr18 61225609 61225609 1 + C T SKCM 61225608 + 61225588 61225628 41 CTACACTTCAACGAATTTTCCCAGAATGAAAGCAAAGAACC CTACACTTCAACGAATTTTCCTAGAATGAAAGCAAAGAACC < 41bp 0.584549406160679 0.797419830037868 0.07297009 0.09665668 prediction 0.425740847754376 Functional Gain - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61225608 chr18:61225609 stopgain 0.094 0 22 hm5C_associated_SNPs_123182 0 0 0 0 2 SERPINB12 chr18:61225659 5'GT 61225659 Upstream 51bp
chr19 35512665 35512665 1 + C A rs2290645 35512664 + 35512644 35512684 41 GGATGCCCGGGGCTTGCTATCCGGCCTGCGGCGGCGGAAGC GGATGCCCGGGGCTTGCTATCAGGCCTGCGGCGGCGGAAGC < 41bp 0.620653380863922 0.83352004558068 0.8536738 0.908679 prediction 0.425733329433515 Functional Gain - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35512664 chr19:35512665 synonymous SNV . 0 22 hm5C_associated_SNPs_123186 0 0 1 0 1 GRAMD1A chr19:35512595 3'AG 35512595 Downstream 71bp
chr19 54967877 54967877 1 + C T UCEC 54967876 + 54967856 54967896 41 CGGCGCTGGAGTGTGAGGACCCGGAGCGAGAGCTGAAGAAG CGGCGCTGGAGTGTGAGGACCTGGAGCGAGAGCTGAAGAAG < 41bp 0.608863503571933 0.82173015824792 0.72500825 0.5291364 prediction 0.425733309351974 Functional Gain - LENG8 ENSG00000167615 CDS Human protein_coding chr19:54967876 chr19:54967877 nonsynonymous SNV 0.608 3 22 hm5C_associated_SNPs_123187 0 0 1 0 1 LENG8 chr19:54967815 3'AG 54967815 Downstream 63bp
chr5 55212506 55212506 1 + T C COAD 55212503 + 55212483 55212523 41 CCTGAAGGAGTCTGATGACTCTGTGAACACAGAAGACAGGA CCTGAAGGAGTCTGATGACTCTGCGAACACAGAAGACAGGA < 41bp 0.511638382603205 0.724497523811181 0.0851883 0.21322301 prediction 0.425718282415952 Functional Gain - IL31RA ENSG00000164509 CDS Human protein_coding chr5:55212503 chr5:55212506 nonsynonymous SNV 0.569 0 24 hm5C_associated_SNPs_123190 0 0 0 0 1 IL31RA chr5:55212472 3'AG 55212472 Downstream 35bp
chr11 107518236 107518236 1 + A G LGG 107518233 + 107518213 107518253 41 CCAATACTCCACTGGAATCTCGGATTTCTAAGCAGTGGTGT CCAATACTCCACTGGAATCTCGGGTTTCTAAGCAGTGGTGT < 41bp 0.573436225651779 0.786292833108046 0.8783932 0.92180157 prediction 0.425713214912535 Functional Gain - ELMOD1 ENSG00000110675 CDS Human protein_coding chr11:107518233 chr11:107518236 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_123191 0 0 0 0 2 ELMOD1 chr11:107518194 3'AG 107518194 Downstream 43bp
chr11 107518236 107518236 1 + A G LGG 107518233 + 107518213 107518253 41 CCAATACTCCACTGGAATCTCGGATTTCTAAGCAGTGGTGT CCAATACTCCACTGGAATCTCGGGTTTCTAAGCAGTGGTGT < 41bp 0.573436225651779 0.786292833108046 0.8783932 0.92180157 prediction 0.425713214912535 Functional Gain - ELMOD1 ENSG00000110675 CDS Human protein_coding chr11:107518233 chr11:107518236 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_123191 0 0 0 0 2 ELMOD1 chr11:107518327 5'GT 107518327 Upstream 92bp
chr6 168445554 168445554 1 + A G STAD 168445551 + 168445531 168445571 41 TTCTCTGCATTTCTCCCAGCCAGAGGCACCTGGCACAGACG TTCTCTGCATTTCTCCCAGCCAGGGGCACCTGGCACAGACG < 41bp 0.459558375896137 0.712850505383688 0.7223828 0.92801976 prediction 0.425701010767375 Functional Gain - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168445551 chr6:168445554 nonsynonymous SNV 0.007 2 24 hm5C_associated_SNPs_123193 0 0 1 0 1 KIF25 chr6:168445507 3'AG 168445507 Downstream 48bp
chr10 135053294 135053294 1 + T C LUSC 135053291 + 135053271 135053311 41 GCACCACCAGTACCTGAGCCCTCTGGAGCGGAAGAGGCTGG GCACCACCAGTACCTGAGCCCTCCGGAGCGGAAGAGGCTGG < 41bp 0.536406189681329 0.749256493252641 0.3243094 0.2848875 prediction 0.425700607142625 Functional Gain - VENTX ENSG00000151650 CDS Human protein_coding chr10:135053291 chr10:135053294 nonsynonymous SNV 0.137 1 24 hm5C_associated_SNPs_123194 0 0 0 0 1 VENTX chr10:135053340 5'GT 135053340 Upstream 47bp
chr3 47450928 47450928 1 + A G UCEC 47450925 + 47450905 47450945 41 AGAAGTTGTTCGAGGAGCAGCTGAAAAAGTATGACCAGCTG AGAAGTTGTTCGAGGAGCAGCTGGAAAAGTATGACCAGCTG < 41bp 0.585284556899308 0.79813341101536 0.8950831 0.6110818 prediction 0.425697708232103 Functional Gain - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47450925 chr3:47450928 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_123195 0 0 1 0 1 PTPN23 chr3:47450907 3'AG 47450907 Downstream 22bp
chr1 10068293 10068293 1 + A G LIHC 10068290 + 10068270 10068310 41 CAGAAGGGAGAAAAGAAGAACAGAGGCTGGACCCATTGGAT CAGAAGGGAGAAAAGAAGAACAGGGGCTGGACCCATTGGAT < 41bp 0.560237580104196 0.773084193341722 0.87615013 0.9137274 prediction 0.425693226475052 Functional Gain - RBP7 ENSG00000162444 CDS Human protein_coding chr1:10068290 chr1:10068293 synonymous SNV . 0 24 hm5C_associated_SNPs_123198 0 0 0 0 1 RBP7 chr1:10068332 5'GT 10068332 Upstream 40bp
chr17 40817529 40817529 1 + C A COAD 40817528 + 40817508 40817548 41 CACAGCCCTGAACCGGATTGCCACAGACCGCCTGCACATCC CACAGCCCTGAACCGGATTGCAACAGACCGCCTGCACATCC < 41bp 0.447293198275219 0.712845101802695 0.2580386 0.14174083 prediction 0.42569020360539 Functional Gain - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817528 chr17:40817529 synonymous SNV . 0 22 hm5C_associated_SNPs_123200 0 0 0 0 2 TUBG2 chr17:40817494 3'AG 40817494 Downstream 36bp
chr17 40817529 40817529 1 + C A COAD 40817528 + 40817508 40817548 41 CACAGCCCTGAACCGGATTGCCACAGACCGCCTGCACATCC CACAGCCCTGAACCGGATTGCAACAGACCGCCTGCACATCC < 41bp 0.447293198275219 0.712845101802695 0.2580386 0.14174083 prediction 0.42569020360539 Functional Gain - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817528 chr17:40817529 synonymous SNV . 0 22 hm5C_associated_SNPs_123200 0 0 0 0 2 TUBG2 chr17:40817580 5'GT 40817580 Upstream 52bp
chr1 202205081 202205081 1 + C T SKCM 202205080 + 202205060 202205100 41 AACAATCAGCTGGGAGGAATCCCCGCAGAGGCGCTGTGGGA AACAATCAGCTGGGAGGAATCTCCGCAGAGGCGCTGTGGGA < 41bp 0.443068715913135 0.712844307496294 0.39297867 0.8046975 prediction 0.425688614992587 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202205080 chr1:202205081 nonsynonymous SNV 0.980 3 22 hm5C_associated_SNPs_123201 0 0 0 0 2 LGR6 chr1:202205050 3'AG 202205050 Downstream 32bp
chr1 202205081 202205081 1 + C T SKCM 202205080 + 202205060 202205100 41 AACAATCAGCTGGGAGGAATCCCCGCAGAGGCGCTGTGGGA AACAATCAGCTGGGAGGAATCTCCGCAGAGGCGCTGTGGGA < 41bp 0.443068715913135 0.712844307496294 0.39297867 0.8046975 prediction 0.425688614992587 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202205080 chr1:202205081 nonsynonymous SNV 0.980 3 22 hm5C_associated_SNPs_123201 0 0 0 0 2 LGR6 chr1:202205121 5'GT 202205121 Upstream 41bp
chr8 90796355 90796355 1 + T C STAD 90796353 + 90796333 90796373 41 CTCTGAACATACCTGTAAATCATGGTCCACAAGAGGTAAAA CTCTGAACATACCTGTAAATCACGGTCCACAAGAGGTAAAA < 41bp 0.445791509626258 0.712839770003663 0.725536 0.75230646 prediction 0.425679540007326 Functional Gain - RIPK2 ENSG00000104312 CDS Human protein_coding chr8:90796353 chr8:90796355 synonymous SNV . 0 23 hm5C_associated_SNPs_123203 0 0 1 0 2 RIPK2 chr8:90796278 3'AG 90796278 Downstream 78bp
chr8 90796355 90796355 1 + T C STAD 90796353 + 90796333 90796373 41 CTCTGAACATACCTGTAAATCATGGTCCACAAGAGGTAAAA CTCTGAACATACCTGTAAATCACGGTCCACAAGAGGTAAAA < 41bp 0.445791509626258 0.712839770003663 0.725536 0.75230646 prediction 0.425679540007326 Functional Gain - RIPK2 ENSG00000104312 CDS Human protein_coding chr8:90796353 chr8:90796355 synonymous SNV . 0 23 hm5C_associated_SNPs_123203 0 0 1 0 2 RIPK2 chr8:90796367 5'GT 90796367 Upstream 13bp
chr16 29818187 29818187 1 + C T STAD 29818186 + 29818166 29818206 41 CCAGTCCCGCTTCTTTGCCTCCCAGGGCTGCGCCCAGAGTC CCAGTCCCGCTTCTTTGCCTCTCAGGGCTGCGCCCAGAGTC < 41bp 0.487703776156971 0.712836773131703 0.15435001 0.08016476 prediction 0.425673546263407 Functional Gain - MAZ ENSG00000103495 CDS Human protein_coding chr16:29818186 chr16:29818187 synonymous SNV . 0 22 hm5C_associated_SNPs_123204 0 0 1 0 2 MAZ chr16:29818128 3'AG 29818128 Downstream 60bp
chr16 29818187 29818187 1 + C T STAD 29818186 + 29818166 29818206 41 CCAGTCCCGCTTCTTTGCCTCCCAGGGCTGCGCCCAGAGTC CCAGTCCCGCTTCTTTGCCTCTCAGGGCTGCGCCCAGAGTC < 41bp 0.487703776156971 0.712836773131703 0.15435001 0.08016476 prediction 0.425673546263407 Functional Gain - MAZ ENSG00000103495 CDS Human protein_coding chr16:29818186 chr16:29818187 synonymous SNV . 0 22 hm5C_associated_SNPs_123204 0 0 1 0 2 MAZ chr16:29818214 5'GT 29818214 Upstream 28bp
chr20 47851624 47851624 1 + C T CESC 47851623 + 47851603 47851643 41 ACGCAGCGGCTGGAGGCCCTCCGGTAACATTTGGGGTGGGG ACGCAGCGGCTGGAGGCCCTCTGGTAACATTTGGGGTGGGG < 41bp 0.597879550855412 0.810713443598127 0.38905448 0.31857193 prediction 0.425667785485429 Functional Gain - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47851623 chr20:47851624 nonsynonymous SNV 0.989 2 22 hm5C_associated_SNPs_123205 0 0 1 0 1 DDX27 chr20:47851625 5'GT 47851625 Upstream 2bp
chr22 25617408 25617408 1 + T G KIRC 25617404 + 25617384 25617424 41 AGGACAGTCCACCATGGCCTCAGATCACCAGACCCAGGCGG AGGACAGTCCACCATGGCCTCAGAGCACCAGACCCAGGCGG < 41bp 0.50731553318722 0.720149135505477 0.36756867 0.56252027 prediction 0.425667204636513 Functional Gain - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25617404 chr22:25617408 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_123206 0 0 0 0 2 CRYBB2 chr22:25617371 3'AG 25617371 Downstream 38bp
chr22 25617408 25617408 1 + T G KIRC 25617404 + 25617384 25617424 41 AGGACAGTCCACCATGGCCTCAGATCACCAGACCCAGGCGG AGGACAGTCCACCATGGCCTCAGAGCACCAGACCCAGGCGG < 41bp 0.50731553318722 0.720149135505477 0.36756867 0.56252027 prediction 0.425667204636513 Functional Gain - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25617404 chr22:25617408 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_123206 0 0 0 0 2 CRYBB2 chr22:25617450 5'GT 25617450 Upstream 43bp
chr14 24108190 24108190 1 + C A HNSC 24108189 + 24108169 24108209 41 CGTCCTGGCTAACCGGGTAGCCGTGGTCACGGGGTCCACCA CGTCCTGGCTAACCGGGTAGCAGTGGTCACGGGGTCCACCA < 41bp 0.628745959951613 0.841578129157091 0.9021498 0.8483455 prediction 0.425664338410956 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24108189 chr14:24108190 synonymous SNV . 0 22 hm5C_associated_SNPs_123208 0 0 1 0 1 DHRS2 chr14:24108213 5'GT 24108213 Upstream 24bp
chr16 28914357 28914357 1 + C A LUSC 28914356 + 28914336 28914376 41 CCTTCCCCTCTGCAGCCTGTCCGAGAACCAGTCCCTGCTGC CCTTCCCCTCTGCAGCCTGTCAGAGAACCAGTCCCTGCTGC < 41bp 0.439517147376271 0.712831485930408 0.2044962 0.89105064 prediction 0.425662971860815 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28914356 chr16:28914357 synonymous SNV . 0 22 hm5C_associated_SNPs_123209 0 0 0 0 1 ATP2A1 chr16:28914351 3'AG 28914351 Downstream 7bp
chr2 207827202 207827202 1 + A G COAD 207827199 + 207827179 207827219 41 GACAGGGCCAGTGTCTGAACCAGAGACTAAAGCTGTTGCCA GACAGGGCCAGTGTCTGAACCAGGGACTAAAGCTGTTGCCA < 41bp 0.594630111110464 0.807453366435243 0.79138595 0.92011726 prediction 0.425646510649557 Functional Gain - CPO ENSG00000144410 CDS Human protein_coding chr2:207827199 chr2:207827202 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_123210 0 0 0 0 1 CPO chr2:207827136 3'AG 207827136 Downstream 67bp
chr8 98731381 98731381 1 + T C UCEC 98731378 + 98731358 98731398 41 TTTTCCTTGAAGACCATAAGCACTAGTGATCCAGCCGAAGT TTTTCCTTGAAGACCATAAGCACCAGTGATCCAGCCGAAGT < 41bp 0.481623434163073 0.71281676645212 0.20824793 0.75318813 prediction 0.425633532904239 Functional Gain - MTDH ENSG00000147649 CDS Human protein_coding chr8:98731378 chr8:98731381 synonymous SNV . 0 24 hm5C_associated_SNPs_123211 0 0 1 0 1 MTDH chr8:98731417 5'GT 98731417 Upstream 37bp
chr5 147481423 147481423 1 + C A KIRC 147481422 + 147481402 147481442 41 AGAATGACCCCATCCAGGGCCCAGATGGAAAAATGCATGGC AGAATGACCCCATCCAGGGCCAAGATGGAAAAATGCATGGC < 41bp 0.451122924459542 0.71281054129975 0.27564198 0.2267589 prediction 0.4256210825995 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147481422 chr5:147481423 nonsynonymous SNV 0.988 3 22 hm5C_associated_SNPs_123212 0 0 0 0 2 SPINK5 chr5:147481344 3'AG 147481344 Downstream 80bp
chr5 147481423 147481423 1 + C A KIRC 147481422 + 147481402 147481442 41 AGAATGACCCCATCCAGGGCCCAGATGGAAAAATGCATGGC AGAATGACCCCATCCAGGGCCAAGATGGAAAAATGCATGGC < 41bp 0.451122924459542 0.71281054129975 0.27564198 0.2267589 prediction 0.4256210825995 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147481422 chr5:147481423 nonsynonymous SNV 0.988 3 22 hm5C_associated_SNPs_123212 0 0 0 0 2 SPINK5 chr5:147481471 5'GT 147481471 Upstream 49bp
chr12 113346548 113346548 1 + C T KICH 113346547 + 113346527 113346567 41 GCTCCACGCTGGGGCAACCCCCGTGCGCTCAGCTTCGTACT GCTCCACGCTGGGGCAACCCCTGTGCGCTCAGCTTCGTACT < 41bp 0.59486358382287 0.807672024367635 0.102816224 0.09263432 prediction 0.42561688108953 Functional Gain - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113346547 chr12:113346548 nonsynonymous SNV 0.005 3 22 hm5C_associated_SNPs_123214 0 0 0 0 1 OAS1 chr12:113346629 5'GT 113346629 Upstream 82bp
chr12 52452493 52452493 1 + C T STAD 52452492 + 52452472 52452512 41 ACCGGCATGGGCTGCAGGAGCCGCGGCGGGTGGAGGAGCTG ACCGGCATGGGCTGCAGGAGCTGCGGCGGGTGGAGGAGCTG < 41bp 0.576095199780329 0.788899113313312 0.78770924 0.8068253 prediction 0.425607827065966 Functional Gain - NR4A1 ENSG00000123358 CDS Human protein_coding chr12:52452492 chr12:52452493 nonsynonymous SNV 0.435 4 22 hm5C_associated_SNPs_123216 0 0 1 0 1 NR4A1 chr12:52452472 3'AG 52452472 Downstream 22bp
chr2 162751265 162751265 1 + T G UCEC 162751261 + 162751241 162751281 41 GAATTGATGAGTTTCTGGATCAGGTTACTGTTCTCCCTCCT GAATTGATGAGTTTCTGGATCAGGGTACTGTTCTCCCTCCT < 41bp 0.505645291809923 0.718448379219766 0.5139761 0.9235786 prediction 0.425606174819687 Functional Gain - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162751261 chr2:162751265 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_123217 0 0 0 0 2 SLC4A10 chr2:162751189 3'AG 162751189 Downstream 77bp
chr2 162751265 162751265 1 + T G UCEC 162751261 + 162751241 162751281 41 GAATTGATGAGTTTCTGGATCAGGTTACTGTTCTCCCTCCT GAATTGATGAGTTTCTGGATCAGGGTACTGTTCTCCCTCCT < 41bp 0.505645291809923 0.718448379219766 0.5139761 0.9235786 prediction 0.425606174819687 Functional Gain - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162751261 chr2:162751265 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_123217 0 0 0 0 2 SLC4A10 chr2:162751335 5'GT 162751335 Upstream 71bp
chr12 64875633 64875633 1 + T A COAD 64875629 + 64875609 64875649 41 AATACTATTTTAGGGGTCTTCAGGTTCTACTTACCCCTGTT AATACTATTTTAGGGGTCTTCAGGATCTACTTACCCCTGTT < 41bp 0.671070725259756 0.883872638057548 0.86553264 0.90230536 prediction 0.425603825595585 Functional Gain - TBK1 ENSG00000183735 CDS Human protein_coding chr12:64875629 chr12:64875633 nonsynonymous SNV 0.894 0 25 hm5C_associated_SNPs_123219 0 0 1 0 1 TBK1 chr12:64875622 3'AG 64875622 Downstream 12bp
chr12 108961024 108961024 1 + C T UCEC 108961023 + 108961003 108961043 41 CCAAGGAGCTCTGCCTTCCTCCCGTGAAACTGCACTGCTCC CCAAGGAGCTCTGCCTTCCTCTCGTGAAACTGCACTGCTCC < 41bp 0.625755834065541 0.838552451232717 0.35083652 0.41281003 prediction 0.425593234334351 Functional Gain - ISCU ENSG00000136003 CDS Human protein_coding chr12:108961023 chr12:108961024 nonsynonymous SNV 0.912 4 22 hm5C_associated_SNPs_123221 0 0 1 0 2 ISCU chr12:108960966 3'AG 108960966 Downstream 59bp
chr12 108961024 108961024 1 + C T UCEC 108961023 + 108961003 108961043 41 CCAAGGAGCTCTGCCTTCCTCCCGTGAAACTGCACTGCTCC CCAAGGAGCTCTGCCTTCCTCTCGTGAAACTGCACTGCTCC < 41bp 0.625755834065541 0.838552451232717 0.35083652 0.41281003 prediction 0.425593234334351 Functional Gain - ISCU ENSG00000136003 CDS Human protein_coding chr12:108961023 chr12:108961024 nonsynonymous SNV 0.912 4 22 hm5C_associated_SNPs_123221 0 0 1 0 2 ISCU chr12:108961044 5'GT 108961044 Upstream 21bp
chr14 57075932 57075932 1 + T C CESC 57075930 + 57075910 57075950 41 CCTTAATCACGCCCGGTGGACCTGGGGAGACCAGACAACAC CCTTAATCACGCCCGGTGGACCCGGGGAGACCAGACAACAC < 41bp 0.433418901007835 0.712794945446689 0.24178803 0.22630477 prediction 0.425589890893378 Functional Gain - TMEM260 ENSG00000070269 CDS Human protein_coding chr14:57075930 chr14:57075932 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_123223 0 0 0 1 1 TMEM260 chr14:57076003 5'GT 57076003 Upstream 72bp
chr9 140110460 140110460 1 + C T SKCM 140110459 + 140110439 140110479 41 GACCCTCATCCCTGCCTTCTCCCGGGAACAGGTGTGTATGC GACCCTCATCCCTGCCTTCTCTCGGGAACAGGTGTGTATGC < 41bp 0.613281087582401 0.826075454996441 0.9140219 0.39896676 prediction 0.425588734828079 Functional Gain - NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110459 chr9:140110460 synonymous SNV . 0 22 hm5C_associated_SNPs_123225 0 0 1 0 1 NDOR1 chr9:140110469 5'GT 140110469 Upstream 10bp
chr20 49197850 49197850 1 + T C UCEC 49197848 + 49197828 49197868 41 GTCGGGTCGTGGGGGGAAGTCTTCGAGGTGCCCAGGCTGCC GTCGGGTCGTGGGGGGAAGTCTCCGAGGTGCCCAGGCTGCC < 41bp 0.655759970926844 0.868551400838384 0.5195509 0.85143363 prediction 0.42558285982308 Functional Gain - PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49197848 chr20:49197850 synonymous SNV . 0 23 hm5C_associated_SNPs_123228 0 0 1 0 1 PTPN1 chr20:49197802 3'AG 49197802 Downstream 49bp
chr11 67187015 67187015 1 + C T SKCM 67187014 + 67186994 67187034 41 CGGCAGGCATGGCGTCTGCACCCGCGGGCAGAGCTGGGTGC CGGCAGGCATGGCGTCTGCACTCGCGGGCAGAGCTGGGTGC < 41bp 0.469531539004431 0.712787933704378 0.4168485 0.48270088 prediction 0.425575867408756 Functional Gain - CARNS1 ENSG00000172508;ENSG00000172531 CDS Human other chr11:67187014 chr11:67187015 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_123231 0 0 0 0 1 CARNS1 chr11:67186958 3'AG 67186958 Downstream 58bp
chr1 18961618 18961618 1 + C T rs142754204 18961617 + 18961597 18961637 41 CTCTGAAGCAGGTGGCGACTCCGGATGTAGAGAAAAAGATT CTCTGAAGCAGGTGGCGACTCTGGATGTAGAGAAAAAGATT < 41bp 0.605910709016433 0.81869707707537 0.484983 0.2326166 prediction 0.425572736117874 Functional Gain - PAX7 ENSG00000009709 CDS Human protein_coding chr1:18961617 chr1:18961618 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_123233 0 0 0 0 1 PAX7 chr1:18961605 3'AG 18961605 Downstream 14bp
chr11 7078931 7078931 1 + T C UCEC 7078928 + 7078908 7078948 41 GCTGGAATCTTGCAACCTAACTGTATTTTGTTGTCTAAATA GCTGGAATCTTGCAACCTAACTGCATTTTGTTGTCTAAATA < 41bp 0.516014838039027 0.728792086156597 0.0947299 0.13190404 prediction 0.425554496235139 Functional Gain - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7078928 chr11:7078931 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_123237 0 0 0 0 1 NLRP14 chr11:7078908 3'AG 7078908 Downstream 24bp
chr2 27262945 27262945 1 + T C UCEC 27262943 + 27262923 27262963 41 TGGGGCTCCCACCTGCTCACCGTGGTGCGGCCCAGCTTGCA TGGGGCTCCCACCTGCTCACCGCGGTGCGGCCCAGCTTGCA < 41bp 0.620863980948181 0.833639865494498 0.32802713 0.490203 prediction 0.425551769092634 Functional Gain - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27262943 chr2:27262945 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_123238 0 0 1 0 1 TMEM214 chr2:27262898 3'AG 27262898 Downstream 48bp
chr1 176659468 176659468 1 + C A OV 176659467 + 176659447 176659487 41 GTGCCGACACCGCCCCCACTCCCAAGAGTGAGCTGTGCCGG GTGCCGACACCGCCCCCACTCACAAGAGTGAGCTGTGCCGG < 41bp 0.616247775820663 0.829019831531958 0.118667305 0.18036002 prediction 0.425544111422591 Functional Gain - PAPPA2 ENSG00000116183 CDS Human protein_coding chr1:176659467 chr1:176659468 nonsynonymous SNV 0.954 4 22 hm5C_associated_SNPs_123239 0 0 0 0 1 PAPPA2 chr1:176659566 5'GT 176659566 Upstream 99bp
chr5 177035964 177035964 1 + T C rs729459 177035962 + 177035942 177035982 41 ACAAGACATTTCGCCACCTGCATGACCCAGCCTGGCGGAAG ACAAGACATTTCGCCACCTGCACGACCCAGCCTGGCGGAAG < 41bp 0.642242512564225 0.855012317314484 0.17901123 0.09051451 prediction 0.425539609500518 Functional Gain - B4GALT7 ENSG00000027847 CDS Human protein_coding chr5:177035962 chr5:177035964 synonymous SNV . 0 23 hm5C_associated_SNPs_123241 1 0 1 0 2 B4GALT7 chr5:177035911 3'AG 177035911 Downstream 54bp
chr5 177035964 177035964 1 + T C rs729459 177035962 + 177035942 177035982 41 ACAAGACATTTCGCCACCTGCATGACCCAGCCTGGCGGAAG ACAAGACATTTCGCCACCTGCACGACCCAGCCTGGCGGAAG < 41bp 0.642242512564225 0.855012317314484 0.17901123 0.09051451 prediction 0.425539609500518 Functional Gain - B4GALT7 ENSG00000027847 CDS Human protein_coding chr5:177035962 chr5:177035964 synonymous SNV . 0 23 hm5C_associated_SNPs_123241 1 0 1 0 2 B4GALT7 chr5:177036015 5'GT 177036015 Upstream 52bp
chr18 52265059 52265059 1 + C T rs78303500 52265058 + 52265038 52265078 41 GCTTAGGTAAAAGAATATTGCCGCAATGACTGGTCTATGTG GCTTAGGTAAAAGAATATTGCTGCAATGACTGGTCTATGTG < 41bp 0.55412949727548 0.766893958330216 0.06630674 0.11492205 prediction 0.425528922109473 Functional Gain - DYNAP ENSG00000178690 CDS Human protein_coding chr18:52265058 chr18:52265059 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_123243 0 0 0 0 1 DYNAP chr18:52265044 3'AG 52265044 Downstream 16bp
chr11 26463531 26463531 1 + C G SKCM 26463527 + 26463507 26463547 41 TAAAACCGTCTCGGAGATCCCTGCCTTGCCTCGCCCAGAGC TAAAACCGTCTCGGAGATCCCTGCGTTGCCTCGCCCAGAGC < 41bp 0.42928339582258 0.712764087927208 0.06143272 0.13287437 prediction 0.425528175854416 Functional Gain - ANO3 ENSG00000134343 CDS Human protein_coding chr11:26463527 chr11:26463531 nonsynonymous SNV 0.987 4 25 hm5C_associated_SNPs_123244 0 0 0 0 1 ANO3 chr11:26463465 3'AG 26463465 Downstream 67bp
chr19 7671263 7671263 1 + T A SKCM 7671259 + 7671239 7671279 41 TGACCAGCTTGGAGCACAAGCTGCTTTTCTGGGTGGACACG TGACCAGCTTGGAGCACAAGCTGCATTTCTGGGTGGACACG < 41bp 0.369064965051378 0.712763562363706 0.032909065 0.12719434 prediction 0.425527124727412 Functional Gain - CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7671259 chr19:7671263 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_123246 0 0 1 0 1 CAMSAP3 chr19:7671279 5'GT 7671279 Upstream 17bp
chr8 35542177 35542177 1 + C T STAD 35542176 + 35542156 35542196 41 AGAGGATGGCAGAAACGTTCCCGGACCTGCACCAACCCAGC AGAGGATGGCAGAAACGTTCCTGGACCTGCACCAACCCAGC < 41bp 0.595401938928625 0.808165495792633 0.22467461 0.13138998 prediction 0.425527113728016 Functional Gain - UNC5D ENSG00000156687 CDS Human protein_coding chr8:35542176 chr8:35542177 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_123247 0 0 0 0 2 UNC5D chr8:35542100 3'AG 35542100 Downstream 78bp
chr8 35542177 35542177 1 + C T STAD 35542176 + 35542156 35542196 41 AGAGGATGGCAGAAACGTTCCCGGACCTGCACCAACCCAGC AGAGGATGGCAGAAACGTTCCTGGACCTGCACCAACCCAGC < 41bp 0.595401938928625 0.808165495792633 0.22467461 0.13138998 prediction 0.425527113728016 Functional Gain - UNC5D ENSG00000156687 CDS Human protein_coding chr8:35542176 chr8:35542177 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_123247 0 0 0 0 2 UNC5D chr8:35542267 5'GT 35542267 Upstream 91bp
chr2 3749189 3749189 1 + C A COAD 3749188 + 3749168 3749208 41 TCAGGCAAAAGTGGATTCTCCCGGCCCACAAGTGGAAACCA TCAGGCAAAAGTGGATTCTCCAGGCCCACAAGTGGAAACCA < 41bp 0.441226757545163 0.712754913687503 0.8898967 0.9231076 prediction 0.425509827375007 Functional Gain - ALLC ENSG00000151360 CDS Human protein_coding chr2:3749188 chr2:3749189 nonsynonymous SNV 0.009 0 22 hm5C_associated_SNPs_123251 0 0 0 0 2 ALLC chr2:3749102 3'AG 3749102 Downstream 88bp
chr2 3749189 3749189 1 + C A COAD 3749188 + 3749168 3749208 41 TCAGGCAAAAGTGGATTCTCCCGGCCCACAAGTGGAAACCA TCAGGCAAAAGTGGATTCTCCAGGCCCACAAGTGGAAACCA < 41bp 0.441226757545163 0.712754913687503 0.8898967 0.9231076 prediction 0.425509827375007 Functional Gain - ALLC ENSG00000151360 CDS Human protein_coding chr2:3749188 chr2:3749189 nonsynonymous SNV 0.009 0 22 hm5C_associated_SNPs_123251 0 0 0 0 2 ALLC chr2:3749226 5'GT 3749226 Upstream 38bp
chr2 187370306 187370306 1 + A G COAD 187370303 + 187370283 187370323 41 GAAAGAAGGAAAGCTGACTTCAAAGCAGGGAAAGCACTAGT GAAAGAAGGAAAGCTGACTTCAAGGCAGGGAAAGCACTAGT < 41bp 0.536062883376576 0.748814770182562 0.48403683 0.37501797 prediction 0.425503773611971 Functional Gain - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187370303 chr2:187370306 synonymous SNV . 0 24 hm5C_associated_SNPs_123253 0 0 1 0 1 ZC3H15 chr2:187370324 5'GT 187370324 Upstream 19bp
chr19 47865872 47865872 1 + C T rs199929866 47865871 + 47865851 47865891 41 AGTCTGCTTCCGCCTCTATGCCGAATCGGACTATGATGCCT AGTCTGCTTCCGCCTCTATGCTGAATCGGACTATGATGCCT < 41bp 0.612359937989927 0.825104682705721 0.015503973 0.046216816 prediction 0.425489489431587 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47865871 chr19:47865872 synonymous SNV . 0 22 hm5C_associated_SNPs_123256 0 0 1 0 1 DHX34 chr19:47865950 5'GT 47865950 Upstream 79bp
chr8 145616114 145616114 1 + T C UCEC 145616112 + 145616092 145616132 41 CACCAGCGGGCGGCTGATGCCCTGGTGGCAGGGGCCATCAG CACCAGCGGGCGGCTGATGCCCCGGTGGCAGGGGCCATCAG < 41bp 0.625820003852426 0.838558326497806 0.20890233 0.32845196 prediction 0.42547664529076 Functional Gain - ADCK5 ENSG00000173137 CDS Human protein_coding chr8:145616112 chr8:145616114 nonsynonymous SNV 0.938 3 23 hm5C_associated_SNPs_123258 0 0 0 0 1 ADCK5 chr8:145616056 3'AG 145616056 Downstream 59bp
chr14 60441356 60441356 1 + A G UCEC 60441353 + 60441333 60441373 41 CTAAGTATAAGTGAGTGTCCCAGAATTGAATTTTTACAGCA CTAAGTATAAGTGAGTGTCCCAGGATTGAATTTTTACAGCA < 41bp 0.53940910854127 0.752139220925021 0.2633565 0.85698694 prediction 0.425460224767501 Functional Gain - LRRC9 ENSG00000131951 CDS Human protein_coding chr14:60441353 chr14:60441356 synonymous SNV . 0 24 hm5C_associated_SNPs_123262 0 0 0 0 2 LRRC9 chr14:60441294 3'AG 60441294 Downstream 63bp
chr14 60441356 60441356 1 + A G UCEC 60441353 + 60441333 60441373 41 CTAAGTATAAGTGAGTGTCCCAGAATTGAATTTTTACAGCA CTAAGTATAAGTGAGTGTCCCAGGATTGAATTTTTACAGCA < 41bp 0.53940910854127 0.752139220925021 0.2633565 0.85698694 prediction 0.425460224767501 Functional Gain - LRRC9 ENSG00000131951 CDS Human protein_coding chr14:60441353 chr14:60441356 synonymous SNV . 0 24 hm5C_associated_SNPs_123262 0 0 0 0 2 LRRC9 chr14:60441426 5'GT 60441426 Upstream 71bp
chr19 37815769 37815769 1 + C T rs141117068 37815768 + 37815748 37815788 41 CTCACTGCAAGCTCTGCCTTCCGGGTTCACACCATTCTCCC CTCACTGCAAGCTCTGCCTTCTGGGTTCACACCATTCTCCC < 41bp 0.499201901066129 0.712727335890599 0.895139 0.29558507 prediction 0.425454671781198 Functional Gain - HKR1 ENSG00000181666 UTR5 Human protein_coding chr19:37815768 chr19:37815769 . . 0 22 hm5C_associated_SNPs_123266 0 0 0 0 2 HKR1 chr19:37815698 3'AG 37815698 Downstream 72bp
chr19 37815769 37815769 1 + C T rs141117068 37815768 + 37815748 37815788 41 CTCACTGCAAGCTCTGCCTTCCGGGTTCACACCATTCTCCC CTCACTGCAAGCTCTGCCTTCTGGGTTCACACCATTCTCCC < 41bp 0.499201901066129 0.712727335890599 0.895139 0.29558507 prediction 0.425454671781198 Functional Gain - HKR1 ENSG00000181666 UTR5 Human protein_coding chr19:37815768 chr19:37815769 . . 0 22 hm5C_associated_SNPs_123266 0 0 0 0 2 HKR1 chr19:37815838 5'GT 37815838 Upstream 70bp
chr17 27027391 27027391 1 + C A UCEC 27027387 + 27027367 27027407 41 TGACACGGGCTGTGAATGCCCTGCCTCAGAACATGACTTCA TGACACGGGCTGTGAATGCCCTGCATCAGAACATGACTTCA < 41bp 0.295385237790432 0.712722802500554 0.039616346 0.047473073 prediction 0.425445605001109 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27027387 chr17:27027391 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_123270 0 0 1 0 1 SUPT6H chr17:27027364 3'AG 27027364 Downstream 28bp
chr3 44879825 44879825 1 + A G COAD 44879822 + 44879802 44879842 41 TGAGCAGCTGAACATGCTCACAGAGGCCTCAAAAAAACACT TGAGCAGCTGAACATGCTCACAGGGGCCTCAAAAAAACACT < 41bp 0.491994545910276 0.712719047262971 0.89300317 0.9096665 prediction 0.425438094525941 Functional Gain - KIF15 ENSG00000163808 CDS Human protein_coding chr3:44879822 chr3:44879825 nonsynonymous SNV 0.802 1 24 hm5C_associated_SNPs_123271 0 0 1 0 2 KIF15 chr3:44879767 3'AG 44879767 Downstream 59bp
chr3 44879825 44879825 1 + A G COAD 44879822 + 44879802 44879842 41 TGAGCAGCTGAACATGCTCACAGAGGCCTCAAAAAAACACT TGAGCAGCTGAACATGCTCACAGGGGCCTCAAAAAAACACT < 41bp 0.491994545910276 0.712719047262971 0.89300317 0.9096665 prediction 0.425438094525941 Functional Gain - KIF15 ENSG00000163808 CDS Human protein_coding chr3:44879822 chr3:44879825 nonsynonymous SNV 0.802 1 24 hm5C_associated_SNPs_123271 0 0 1 0 2 KIF15 chr3:44879913 5'GT 44879913 Upstream 89bp
chr11 86123501 86123501 1 + A G GBM 86123498 + 86123478 86123518 41 TTAAGCAAGAGGAATATTCCCGGAGTCTCCTGAAACAAATG TTAAGCAAGAGGAATATTCCCGGGGTCTCCTGAAACAAATG < 41bp 0.564126599490666 0.77684555881883 0.87073237 0.91720414 prediction 0.425437918656329 Functional Gain - CCDC81 ENSG00000149201 CDS Human protein_coding chr11:86123498 chr11:86123501 nonsynonymous SNV 0.977 0 24 hm5C_associated_SNPs_123272 0 0 1 0 1 CCDC81 chr11:86123429 3'AG 86123429 Downstream 73bp
chr4 147108527 147108527 1 + C T UCEC 147108526 + 147108506 147108546 41 AAGTATGGGGATGCATTTATCCGAGGAAACAATGGTAACAT AAGTATGGGGATGCATTTATCTGAGGAAACAATGGTAACAT < 41bp 0.561012755011203 0.773722528522436 0.9282917 0.83821666 prediction 0.425419547022465 Functional Gain - LSM6 ENSG00000164167 CDS Human protein_coding chr4:147108526 chr4:147108527 stopgain 0.997 1 22 hm5C_associated_SNPs_123275 0 0 1 0 1 LSM6 chr4:147108539 5'GT 147108539 Upstream 13bp
chr19 4157240 4157240 1 + A G OV 4157237 + 4157217 4157257 41 CCTGGCAACTCTTGCTCCACCACAACCCCAGGGCCAGTGAT CCTGGCAACTCTTGCTCCACCACGACCCCAGGGCCAGTGAT < 41bp 0.614314914549202 0.827021069101768 0.03732288 0.055375636 prediction 0.425412309105132 Functional Gain - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4157237 chr19:4157240 synonymous SNV . 0 24 hm5C_associated_SNPs_123277 0 0 0 0 1 CREB3L3 chr19:4157292 5'GT 4157292 Upstream 53bp
chr10 60047332 60047332 1 + T C LIHC 60047329 + 60047309 60047349 41 TTCTCTTCCTAGTTCCCATTCTGTGATGGGGCTCACACAAA TTCTCTTCCTAGTTCCCATTCTGCGATGGGGCTCACACAAA < 41bp 0.519646828053465 0.732347727544284 0.11413026 0.060394496 prediction 0.425401798981639 Functional Gain - CISD1 ENSG00000122873 CDS Human protein_coding chr10:60047329 chr10:60047332 synonymous SNV . 0 24 hm5C_associated_SNPs_123279 0 0 1 0 1 CISD1 chr10:60047321 3'AG 60047321 Downstream 12bp
chr1 113235477 113235477 1 + C T PRAD 113235476 + 113235456 113235496 41 CTGCAGATGGAGCATGATATCCGGCACTATGACCTGGAGTC CTGCAGATGGAGCATGATATCTGGCACTATGACCTGGAGTC < 41bp 0.588299662942454 0.800999332714524 0.7900051 0.34357858 prediction 0.425399339544139 Functional Gain - MOV10 ENSG00000155363 CDS Human protein_coding chr1:113235476 chr1:113235477 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_123281 0 0 1 0 2 MOV10 chr1:113235383 3'AG 113235383 Downstream 95bp
chr1 113235477 113235477 1 + C T PRAD 113235476 + 113235456 113235496 41 CTGCAGATGGAGCATGATATCCGGCACTATGACCTGGAGTC CTGCAGATGGAGCATGATATCTGGCACTATGACCTGGAGTC < 41bp 0.588299662942454 0.800999332714524 0.7900051 0.34357858 prediction 0.425399339544139 Functional Gain - MOV10 ENSG00000155363 CDS Human protein_coding chr1:113235476 chr1:113235477 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_123281 0 0 1 0 2 MOV10 chr1:113235551 5'GT 113235551 Upstream 75bp
chr11 124950579 124950579 1 + C A OV 124950578 + 124950558 124950598 41 CATCCTGGGCTCCCTGATCGCCGGCATCTGGGTGAACGGGC CATCCTGGGCTCCCTGATCGCAGGCATCTGGGTGAACGGGC < 41bp 0.439524071624885 0.712684564680517 0.8835474 0.9120851 prediction 0.425369129361035 Functional Gain - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124950578 chr11:124950579 synonymous SNV . 0 22 hm5C_associated_SNPs_123286 0 0 0 0 2 SLC37A2 chr11:124950510 3'AG 124950510 Downstream 70bp
chr11 124950579 124950579 1 + C A OV 124950578 + 124950558 124950598 41 CATCCTGGGCTCCCTGATCGCCGGCATCTGGGTGAACGGGC CATCCTGGGCTCCCTGATCGCAGGCATCTGGGTGAACGGGC < 41bp 0.439524071624885 0.712684564680517 0.8835474 0.9120851 prediction 0.425369129361035 Functional Gain - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124950578 chr11:124950579 synonymous SNV . 0 22 hm5C_associated_SNPs_123286 0 0 0 0 2 SLC37A2 chr11:124950676 5'GT 124950676 Upstream 98bp
chr8 146278777 146278777 1 + T C COAD 146278774 + 146278754 146278794 41 ATGCACTCCTTGTTTGGAGACTATAGGGCTCAGATGGAAGC ATGCACTCCTTGTTTGGAGACTACAGGGCTCAGATGGAAGC < 41bp 0.56016677320147 0.772849014020937 0.2848618 0.761667 prediction 0.425364481638935 Functional Gain - C8orf33 ENSG00000182307 CDS Human protein_coding chr8:146278774 chr8:146278777 synonymous SNV . 0 24 hm5C_associated_SNPs_123287 0 0 1 0 2 C8orf33 chr8:146278683 3'AG 146278683 Downstream 95bp
chr8 146278777 146278777 1 + T C COAD 146278774 + 146278754 146278794 41 ATGCACTCCTTGTTTGGAGACTATAGGGCTCAGATGGAAGC ATGCACTCCTTGTTTGGAGACTACAGGGCTCAGATGGAAGC < 41bp 0.56016677320147 0.772849014020937 0.2848618 0.761667 prediction 0.425364481638935 Functional Gain - C8orf33 ENSG00000182307 CDS Human protein_coding chr8:146278774 chr8:146278777 synonymous SNV . 0 24 hm5C_associated_SNPs_123287 0 0 1 0 2 C8orf33 chr8:146278829 5'GT 146278829 Upstream 53bp
chr11 63273997 63273997 1 + C A SARC 63273996 + 63273976 63274016 41 CTGCAACCACCAGTCTTCCACCCGGTGAGTTGTCACTCTAA CTGCAACCACCAGTCTTCCACACGGTGAGTTGTCACTCTAA < 41bp 0.454365631146594 0.712680624455375 0.31606415 0.3739965 prediction 0.42536124891075 Functional Gain - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63273996 chr11:63273997 nonsynonymous SNV 0.422 3 22 hm5C_associated_SNPs_123288 0 0 0 0 1 LGALS12 chr11:63273999 5'GT 63273999 Upstream 3bp
chr19 19638843 19638843 1 + C T COAD 19638842 + 19638822 19638862 41 GAGTCTGTGTTCCACACAACCCGCTGGGTGCCCCCCTTGAT GAGTCTGTGTTCCACACAACCTGCTGGGTGCCCCCCTTGAT < 41bp 0.465922902052431 0.712671269661897 0.40631342 0.3474402 prediction 0.425342539323794 Functional Gain - NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19638842 chr19:19638843 nonsynonymous SNV 0.377 4 22 hm5C_associated_SNPs_123291 0 0 1 0 2 NDUFA13 chr19:19638816 3'AG 19638816 Downstream 28bp
chr19 19638843 19638843 1 + C T COAD 19638842 + 19638822 19638862 41 GAGTCTGTGTTCCACACAACCCGCTGGGTGCCCCCCTTGAT GAGTCTGTGTTCCACACAACCTGCTGGGTGCCCCCCTTGAT < 41bp 0.465922902052431 0.712671269661897 0.40631342 0.3474402 prediction 0.425342539323794 Functional Gain - NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19638842 chr19:19638843 nonsynonymous SNV 0.377 4 22 hm5C_associated_SNPs_123291 0 0 1 0 2 NDUFA13 chr19:19638925 5'GT 19638925 Upstream 83bp
chr16 31139380 31139380 1 + C A COAD 31139379 + 31139359 31139399 41 GTCCCCGACCAGGGTCAGTGCCAGTGGCGGCAGCCCCCCGG GTCCCCGACCAGGGTCAGTGCAAGTGGCGGCAGCCCCCCGG < 41bp 0.631253781131254 0.843921901320909 0.35944322 0.82384086 prediction 0.42533624037931 Functional Gain - KAT8 ENSG00000103510 CDS Human protein_coding chr16:31139379 chr16:31139380 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_123292 0 0 1 0 1 KAT8 chr16:31139460 5'GT 31139460 Upstream 81bp
chr16 83940624 83940624 1 + A G UCEC 83940621 + 83940601 83940641 41 GGGGTGCTGAAAGGAATGCTCTCAGAATGGTTTTCCTCCGG GGGGTGCTGAAAGGAATGCTCTCGGAATGGTTTTCCTCCGG < 41bp 0.59716708082133 0.809834564592698 0.13182256 0.42790902 prediction 0.425334967542736 Functional Gain - MLYCD ENSG00000103150 CDS Human protein_coding chr16:83940621 chr16:83940624 synonymous SNV . 0 24 hm5C_associated_SNPs_123293 0 0 0 0 2 MLYCD chr16:83940592 3'AG 83940592 Downstream 33bp
chr16 83940624 83940624 1 + A G UCEC 83940621 + 83940601 83940641 41 GGGGTGCTGAAAGGAATGCTCTCAGAATGGTTTTCCTCCGG GGGGTGCTGAAAGGAATGCTCTCGGAATGGTTTTCCTCCGG < 41bp 0.59716708082133 0.809834564592698 0.13182256 0.42790902 prediction 0.425334967542736 Functional Gain - MLYCD ENSG00000103150 CDS Human protein_coding chr16:83940621 chr16:83940624 synonymous SNV . 0 24 hm5C_associated_SNPs_123293 0 0 0 0 2 MLYCD chr16:83940704 5'GT 83940704 Upstream 81bp
chr1 155023107 155023107 1 - G A SKCM 155023108 - 155023088 155023128 41 GCAGCCGCGGTGCAGGATATCCGCCAGCGGGTGGCGCTGTT GCAGCCGCGGTGCAGGATATCTGCCAGCGGGTGGCGCTGTT < 41bp 0.506660124001448 0.719326284006877 0.35608578 0.18926528 prediction 0.425332320010857 Functional Gain - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155023108 chr1:155023107 synonymous SNV . 0 22 hm5C_associated_SNPs_123295 0 0 1 0 1 DCST1-AS1 chr1:155023083 5'GT 155023083 Upstream 25bp
chr20 61942783 61942783 1 + A G rs3746376 61942780 + 61942760 61942800 41 CCCCGGGCGCTGACCCTGGCCGCAGTGACGCCCAGAACCGT CCCCGGGCGCTGACCCTGGCCGCGGTGACGCCCAGAACCGT < 41bp 0.594910219318851 0.807574773455774 0.10764626 0.21513346 prediction 0.425329108273845 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61942780 chr20:61942783 synonymous SNV . 0 24 hm5C_associated_SNPs_123297 0 0 0 0 1 COL20A1 chr20:61942746 3'AG 61942746 Downstream 38bp
chr20 44048183 44048183 1 + C T rs574183358 44048182 + 44048162 44048202 41 CTGAAGGCAGATCGCTTGTTCCACACCAGCTACCACTCCCA CTGAAGGCAGATCGCTTGTTCTACACCAGCTACCACTCCCA < 41bp 0.576558409368757 0.789217628649211 0.057375968 0.32561362 prediction 0.425318438560907 Functional Gain - PIGT ENSG00000124155 CDS Human protein_coding chr20:44048182 chr20:44048183 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_123299 2 0 1 1 2 PIGT chr20:44048113 3'AG 44048113 Downstream 71bp
chr20 44048183 44048183 1 + C T rs574183358 44048182 + 44048162 44048202 41 CTGAAGGCAGATCGCTTGTTCCACACCAGCTACCACTCCCA CTGAAGGCAGATCGCTTGTTCTACACCAGCTACCACTCCCA < 41bp 0.576558409368757 0.789217628649211 0.057375968 0.32561362 prediction 0.425318438560907 Functional Gain - PIGT ENSG00000124155 CDS Human protein_coding chr20:44048182 chr20:44048183 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_123299 2 0 1 1 2 PIGT chr20:44048144 3'AG 44048144 Downstream 40bp
chr22 37331701 37331701 1 + C A THCA 37331700 + 37331680 37331720 41 GAAAGTGGGAGGAGAAGATCCCCAACCCCAGCAAGAGCCAC GAAAGTGGGAGGAGAAGATCCACAACCCCAGCAAGAGCCAC < 41bp 0.445534944963031 0.712655584951299 0.053023756 0.08831161 prediction 0.425311169902598 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37331700 chr22:37331701 nonsynonymous SNV 0.987 5 22 hm5C_associated_SNPs_123302 0 0 0 0 2 CSF2RB chr22:37331672 3'AG 37331672 Downstream 30bp
chr22 37331701 37331701 1 + C A THCA 37331700 + 37331680 37331720 41 GAAAGTGGGAGGAGAAGATCCCCAACCCCAGCAAGAGCCAC GAAAGTGGGAGGAGAAGATCCACAACCCCAGCAAGAGCCAC < 41bp 0.445534944963031 0.712655584951299 0.053023756 0.08831161 prediction 0.425311169902598 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37331700 chr22:37331701 nonsynonymous SNV 0.987 5 22 hm5C_associated_SNPs_123302 0 0 0 0 2 CSF2RB chr22:37331729 5'GT 37331729 Upstream 29bp
chr1 46877885 46877885 1 + C G rs75429705 46877881 + 46877861 46877901 41 ATGTGGTGCTGACCCCCATGCTGGCCCCTGCTCTGGACTTG ATGTGGTGCTGACCCCCATGCTGGGCCCTGCTCTGGACTTG < 41bp 0.666194328030859 0.878844606885694 0.2656839 0.61694366 prediction 0.425300557709671 Functional Gain - FAAH ENSG00000117480 CDS Human protein_coding chr1:46877881 chr1:46877885 nonsynonymous SNV 0.981 0 25 hm5C_associated_SNPs_123304 0 0 1 0 2 FAAH chr1:46877815 3'AG 46877815 Downstream 71bp
chr1 46877885 46877885 1 + C G rs75429705 46877881 + 46877861 46877901 41 ATGTGGTGCTGACCCCCATGCTGGCCCCTGCTCTGGACTTG ATGTGGTGCTGACCCCCATGCTGGGCCCTGCTCTGGACTTG < 41bp 0.666194328030859 0.878844606885694 0.2656839 0.61694366 prediction 0.425300557709671 Functional Gain - FAAH ENSG00000117480 CDS Human protein_coding chr1:46877881 chr1:46877885 nonsynonymous SNV 0.981 0 25 hm5C_associated_SNPs_123304 0 0 1 0 2 FAAH chr1:46877923 5'GT 46877923 Upstream 39bp
chr15 41099853 41099853 1 + C G UCS 41099849 + 41099829 41099869 41 GTACGCTGGCTGCAGGAGAGCGTCCGGATTCCCTGCTCTAG GTACGCTGGCTGCAGGAGAGCGTCGGGATTCCCTGCTCTAG < 41bp 0.418334517437602 0.712648062616179 0.32889146 0.42972976 prediction 0.425296125232358 Functional Gain - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41099849 chr15:41099853 synonymous SNV . 0 25 hm5C_associated_SNPs_123306 0 0 0 0 1 ZFYVE19 chr15:41099869 5'GT 41099869 Upstream 17bp
chrX 47086497 47086497 1 + C T UCEC 47086496 + 47086476 47086516 41 GCCCTTTTGAGCCACGCACCCCGGTGAGGCTGGTGGGTGGG GCCCTTTTGAGCCACGCACCCTGGTGAGGCTGGTGGGTGGG < 41bp 0.463386004488654 0.712645114760091 0.24698344 0.24869308 prediction 0.425290229520182 Functional Gain - CDK16 ENSG00000102225 CDS Human protein_coding chrX:47086496 chrX:47086497 stopgain 1.000 2 22 hm5C_associated_SNPs_123308 1 0 1 0 1 CDK16 chrX:47086498 5'GT 47086498 Upstream 2bp
chr3 127335869 127335869 1 + C T SKCM 127335868 + 127335848 127335888 41 GTGGGCCTCACGGCGTATGTCCAGCGGCACCCTGTCAGCAG GTGGGCCTCACGGCGTATGTCTAGCGGCACCCTGTCAGCAG < 41bp 0.602019186051781 0.814663496974263 0.6084686 0.27497 prediction 0.425288621844963 Functional Gain - MCM2 ENSG00000073111 CDS Human protein_coding chr3:127335868 chr3:127335869 stopgain 0.009 1 22 hm5C_associated_SNPs_123309 0 0 1 0 1 MCM2 chr3:127335961 5'GT 127335961 Upstream 93bp
chr11 66330603 66330603 1 + C T UCEC 66330602 + 66330582 66330622 41 CCTACAAGGGATCCGGGGCCCCGGCTGGAGCCCTGGACTAC CCTACAAGGGATCCGGGGCCCTGGCTGGAGCCCTGGACTAC < 41bp 0.498324124450551 0.712636755876336 0.75378454 0.37209323 prediction 0.425273511752671 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66330602 chr11:66330603 unknown 0.065 0 22 hm5C_associated_SNPs_123310 0 0 0 0 1 ACTN3 chr11:66330506 3'AG 66330506 Downstream 98bp
chr1 117552757 117552757 1 + A G UCEC 117552754 + 117552734 117552774 41 CTCAGTCTTGTTGCACATCTCAAAACTCCAGATGAAGGATG CTCAGTCTTGTTGCACATCTCAAGACTCCAGATGAAGGATG < 41bp 0.599061396796325 0.811697292539603 0.18762237 0.41459647 prediction 0.425271791486555 Functional Gain - CD101 ENSG00000134256 CDS Human protein_coding chr1:117552754 chr1:117552757 nonsynonymous SNV 0.883 0 24 hm5C_associated_SNPs_123311 0 0 0 0 1 CD101 chr1:117552852 5'GT 117552852 Upstream 96bp
chr16 67859887 67859887 1 + T C LIHC 67859885 + 67859865 67859905 41 GAGATCCTCATGCAGCTGCACATGAGCACGCTGAAGGAACG GAGATCCTCATGCAGCTGCACACGAGCACGCTGAAGGAACG < 41bp 0.420433587329881 0.712627311571158 0.09551713 0.10932085 prediction 0.425254623142316 Functional Gain - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67859885 chr16:67859887 nonsynonymous SNV 0.989 1 23 hm5C_associated_SNPs_123312 0 0 0 0 2 TSNAXIP1 chr16:67859820 3'AG 67859820 Downstream 68bp
chr16 67859887 67859887 1 + T C LIHC 67859885 + 67859865 67859905 41 GAGATCCTCATGCAGCTGCACATGAGCACGCTGAAGGAACG GAGATCCTCATGCAGCTGCACACGAGCACGCTGAAGGAACG < 41bp 0.420433587329881 0.712627311571158 0.09551713 0.10932085 prediction 0.425254623142316 Functional Gain - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67859885 chr16:67859887 nonsynonymous SNV 0.989 1 23 hm5C_associated_SNPs_123312 0 0 0 0 2 TSNAXIP1 chr16:67859979 5'GT 67859979 Upstream 93bp
chr16 88066772 88066772 1 + C T COAD 88066771 + 88066751 88066791 41 TCCCGCAGCCACAGCCGCAGCCGCAGGCCCTGCACTACGCG TCCCGCAGCCACAGCCGCAGCTGCAGGCCCTGCACTACGCG < 41bp 0.626724520960315 0.839351599309988 0.49295607 0.68003607 prediction 0.425254156699347 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88066771 chr16:88066772 nonsynonymous SNV 0.547 3 22 hm5C_associated_SNPs_123313 0 0 0 0 1 BANP chr16:88066715 3'AG 88066715 Downstream 58bp
chr5 133887867 133887867 1 + C T rs148698918 133887866 + 133887846 133887886 41 GAAAGGTGTGCAGGTGCCTGCCGGGGCAGAGGCCATCCCAG GAAAGGTGTGCAGGTGCCTGCTGGGGCAGAGGCCATCCCAG < 41bp 0.572021353859851 0.784644764618635 0.90370524 0.8093151 prediction 0.425246821517569 Functional Gain - JADE2 ENSG00000043143 CDS Human protein_coding chr5:133887866 chr5:133887867 synonymous SNV . 0 22 hm5C_associated_SNPs_123315 0 0 1 0 1 JADE2 chr5:133887899 5'GT 133887899 Upstream 33bp
chr6 35748899 35748899 1 + C T UCEC 35748898 + 35748878 35748918 41 CCTGTGGGCCATGATGCTACCCCAATGGCTGCTGCTGCTGT CCTGTGGGCCATGATGCTACCTCAATGGCTGCTGCTGCTGT < 41bp 0.536860060666905 0.749468190043898 0.13580874 0.5748301 prediction 0.425216258753986 Functional Gain - CLPSL1 ENSG00000204140 CDS Human protein_coding chr6:35748898 chr6:35748899 synonymous SNV . 0 22 hm5C_associated_SNPs_123320 0 0 0 0 1 CLPSL1 chr6:35748986 5'GT 35748986 Upstream 88bp
chrX 7811321 7811321 1 + C T UCEC 7811320 + 7811300 7811340 41 AGAGGAAGTCCTCCTCTCAGCCGAGCCCCAGTGACCCGAAG AGAGGAAGTCCTCCTCTCAGCTGAGCCCCAGTGACCCGAAG < 41bp 0.519484487813843 0.732090563110366 0.3643852 0.27514237 prediction 0.425212150593046 Functional Gain - VCX ENSG00000182583 CDS Human protein_coding chrX:7811320 chrX:7811321 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_123323 0 0 0 0 1 VCX chrX:7811346 5'GT 7811346 Upstream 26bp
chr16 30507602 30507602 1 + C T SKCM 30507601 + 30507581 30507621 41 GGAGGCACGGGGGGCTTAGTCCCCAGCCAAGTCAGGTGACG GGAGGCACGGGGGGCTTAGTCTCCAGCCAAGTCAGGTGACG < 41bp 0.623878439772248 0.836484434510378 0.23373789 0.94885135 prediction 0.425211989476259 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30507601 chr16:30507602 nonsynonymous SNV 0.246 1 22 hm5C_associated_SNPs_123324 0 0 0 0 1 ITGAL chr16:30507615 5'GT 30507615 Upstream 14bp
chr22 24123434 24123434 1 + C T CESC 24123433 + 24123413 24123453 41 TTTGACGCGGTCTCCACCATCCGAGGCGAGCTCTTTTTCTT TTTGACGCGGTCTCCACCATCTGAGGCGAGCTCTTTTTCTT < 41bp 0.60143509072414 0.814035313268321 0.9116763 0.87159324 prediction 0.425200445088361 Functional Gain - MMP11 ENSG00000099953 CDS Human protein_coding chr22:24123433 chr22:24123434 stopgain 0.994 1 22 hm5C_associated_SNPs_123326 0 0 0 0 1 MMP11 chr22:24123380 3'AG 24123380 Downstream 55bp
chr1 898153 898153 1 + C A rs147703918 898152 + 898132 898172 41 GGCCACGTGGATGCCGAGAGCCTGGTGAGGCACCACCCTGA GGCCACGTGGATGCCGAGAGCATGGTGAGGCACCACCCTGA < 41bp 0.453695761367635 0.712599034105605 0.81308365 0.8985518 prediction 0.42519806821121 Functional Gain - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:898152 chr1:898153 nonsynonymous SNV 0.979 4 22 hm5C_associated_SNPs_123327 0 0 1 0 1 KLHL17 chr1:898084 3'AG 898084 Downstream 70bp
chr2 242757402 242757402 1 + C T BLCA 242757401 + 242757381 242757421 41 GGCCACATTCGCTGTGGGTCCCGGCCACGGCGTGCAGCTGC GGCCACATTCGCTGTGGGTCCTGGCCACGGCGTGCAGCTGC < 41bp 0.488360544948707 0.712596245027826 0.5443078 0.50910395 prediction 0.425192490055652 Functional Gain - NEU4 ENSG00000204099 CDS Human protein_coding chr2:242757401 chr2:242757402 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_123329 0 0 0 0 1 NEU4 chr2:242757377 3'AG 242757377 Downstream 26bp
chr17 65021068 65021068 1 + C A LUAD 65021067 + 65021047 65021087 41 GGTGCTGGCAGGATCTACAGCCGCAAGAACAACATCGTCCT GGTGCTGGCAGGATCTACAGCAGCAAGAACAACATCGTCCT < 41bp 0.625559344741583 0.838154379257716 0.20488885 0.21917576 prediction 0.425190069032265 Functional Gain - CACNG4 ENSG00000075461 CDS Human protein_coding chr17:65021067 chr17:65021068 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_123331 0 0 0 0 2 CACNG4 chr17:65020976 3'AG 65020976 Downstream 93bp
chr17 65021068 65021068 1 + C A LUAD 65021067 + 65021047 65021087 41 GGTGCTGGCAGGATCTACAGCCGCAAGAACAACATCGTCCT GGTGCTGGCAGGATCTACAGCAGCAAGAACAACATCGTCCT < 41bp 0.625559344741583 0.838154379257716 0.20488885 0.21917576 prediction 0.425190069032265 Functional Gain - CACNG4 ENSG00000075461 CDS Human protein_coding chr17:65021067 chr17:65021068 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_123331 0 0 0 0 2 CACNG4 chr17:65021116 5'GT 65021116 Upstream 49bp
chr6 26406217 26406217 1 + C T SKCM 26406216 + 26406196 26406236 41 GATCTGCCCTGTCACCTGTTCCCGACCATGAGTGCAGAGAC GATCTGCCCTGTCACCTGTTCTCGACCATGAGTGCAGAGAC < 41bp 0.626962404284972 0.839553834337779 0.12471199 0.25401852 prediction 0.425182860105614 Functional Gain - BTN3A1 ENSG00000026950 CDS Human protein_coding chr6:26406216 chr6:26406217 nonsynonymous SNV 0.009 3 22 hm5C_associated_SNPs_123332 0 0 0 0 1 BTN3A1 chr6:26406137 3'AG 26406137 Downstream 81bp
chr1 231349712 231349712 1 + C T UCEC 231349711 + 231349691 231349731 41 ATGCCAGCCCTCAGCCTCAACCGCAACGTGCAGGTACACAC ATGCCAGCCCTCAGCCTCAACTGCAACGTGCAGGTACACAC < 41bp 0.452153309194392 0.712590248153435 0.16416112 0.17824069 prediction 0.42518049630687 Functional Gain - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231349711 chr1:231349712 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_123333 0 0 0 0 1 TRIM67 chr1:231349723 5'GT 231349723 Upstream 12bp
chr19 35510406 35510406 1 + C T SKCM 35510405 + 35510385 35510425 41 ACTGCCCACCGCTACTGCATCCTGGGTCTGGCCCGGAACAA ACTGCCCACCGCTACTGCATCTTGGGTCTGGCCCGGAACAA < 41bp 0.452257921823302 0.712589475199812 0.19093907 0.10580549 prediction 0.425178950399623 Functional Gain - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35510405 chr19:35510406 synonymous SNV . 0 22 hm5C_associated_SNPs_123334 0 0 0 0 1 GRAMD1A chr19:35510437 5'GT 35510437 Upstream 32bp
chrX 46951504 46951504 1 + T C UCEC 46951502 + 46951482 46951522 41 GTTGCCTGTTGATAAAACAACTTCATGCTGCTTTGGAGGGA GTTGCCTGTTGATAAAACAACTCCATGCTGCTTTGGAGGGA < 41bp 0.3977106382161 0.712583987193649 0.042757213 0.9456432 prediction 0.425167974387299 Functional Gain - RGN ENSG00000130988 CDS Human protein_coding chrX:46951502 chrX:46951504 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_123335 0 0 0 0 1 RGN chrX:46951460 3'AG 46951460 Downstream 45bp
chr19 3938681 3938681 1 + C A LUSC 3938680 + 3938660 3938700 41 CCGCAGAAGTTTGCCCGTGCCCACGGGGTCAGCGTCCAGCC CCGCAGAAGTTTGCCCGTGCCAACGGGGTCAGCGTCCAGCC < 41bp 0.624097421288772 0.836681075204549 0.10158816 0.38240677 prediction 0.425167307831553 Functional Gain - NMRK2 ENSG00000077009 CDS Human protein_coding chr19:3938680 chr19:3938681 nonsynonymous SNV 0.044 2 22 hm5C_associated_SNPs_123336 0 0 0 0 2 NMRK2 chr19:3938601 3'AG 3938601 Downstream 81bp
chr19 3938681 3938681 1 + C A LUSC 3938680 + 3938660 3938700 41 CCGCAGAAGTTTGCCCGTGCCCACGGGGTCAGCGTCCAGCC CCGCAGAAGTTTGCCCGTGCCAACGGGGTCAGCGTCCAGCC < 41bp 0.624097421288772 0.836681075204549 0.10158816 0.38240677 prediction 0.425167307831553 Functional Gain - NMRK2 ENSG00000077009 CDS Human protein_coding chr19:3938680 chr19:3938681 nonsynonymous SNV 0.044 2 22 hm5C_associated_SNPs_123336 0 0 0 0 2 NMRK2 chr19:3938757 5'GT 3938757 Upstream 77bp
chr19 42392168 42392168 1 + C T SKCM 42392167 + 42392147 42392187 41 CAGGGAGATGGAAGACTTCGCCCGAGGGGCGGTGAGTGGAC CAGGGAGATGGAAGACTTCGCTCGAGGGGCGGTGAGTGGAC < 41bp 0.55664617948465 0.769225235188341 0.2557369 0.12010923 prediction 0.425158111407383 Functional Gain - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42392167 chr19:42392168 synonymous SNV . 0 22 hm5C_associated_SNPs_123337 0 0 1 0 2 ARHGEF1 chr19:42392135 3'AG 42392135 Downstream 34bp
chr19 42392168 42392168 1 + C T SKCM 42392167 + 42392147 42392187 41 CAGGGAGATGGAAGACTTCGCCCGAGGGGCGGTGAGTGGAC CAGGGAGATGGAAGACTTCGCTCGAGGGGCGGTGAGTGGAC < 41bp 0.55664617948465 0.769225235188341 0.2557369 0.12010923 prediction 0.425158111407383 Functional Gain - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42392167 chr19:42392168 synonymous SNV . 0 22 hm5C_associated_SNPs_123337 0 0 1 0 2 ARHGEF1 chr19:42392177 5'GT 42392177 Upstream 10bp
chr20 43034783 43034783 1 + C T rs736823 43034782 + 43034762 43034802 41 TGCCATCTGCGGGGACCGGGCCACGGGCAAACACTACGGTG TGCCATCTGCGGGGACCGGGCTACGGGCAAACACTACGGTG < 41bp 0.459018210998301 0.712576874868795 0.9064674 0.8945857 prediction 0.42515374973759 Functional Gain - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43034782 chr20:43034783 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_123339 3 0 1 0 2 HNF4A chr20:43034698 3'AG 43034698 Downstream 86bp
chr20 43034783 43034783 1 + C T rs736823 43034782 + 43034762 43034802 41 TGCCATCTGCGGGGACCGGGCCACGGGCAAACACTACGGTG TGCCATCTGCGGGGACCGGGCTACGGGCAAACACTACGGTG < 41bp 0.459018210998301 0.712576874868795 0.9064674 0.8945857 prediction 0.42515374973759 Functional Gain - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43034782 chr20:43034783 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_123339 3 0 1 0 2 HNF4A chr20:43034872 5'GT 43034872 Upstream 90bp
chr9 133339513 133339513 1 + C T SKCM 133339512 + 133339492 133339532 41 TTGCAGGGGAACGATCAGGTCCGGTTTGAGCTCAGCTGCTA TTGCAGGGGAACGATCAGGTCTGGTTTGAGCTCAGCTGCTA < 41bp 0.591058187608499 0.803634607139463 0.40559393 0.3543204 prediction 0.425152839061929 Functional Gain - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133339512 chr9:133339513 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_123340 0 0 0 0 2 ASS1 chr9:133339498 3'AG 133339498 Downstream 16bp
chr9 133339513 133339513 1 + C T SKCM 133339512 + 133339492 133339532 41 TTGCAGGGGAACGATCAGGTCCGGTTTGAGCTCAGCTGCTA TTGCAGGGGAACGATCAGGTCTGGTTTGAGCTCAGCTGCTA < 41bp 0.591058187608499 0.803634607139463 0.40559393 0.3543204 prediction 0.425152839061929 Functional Gain - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133339512 chr9:133339513 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_123340 0 0 0 0 2 ASS1 chr9:133339554 5'GT 133339554 Upstream 42bp
chr19 42300634 42300634 1 + C T SKCM 42300633 + 42300613 42300653 41 GGGCCCCCCTCAGCCTCTCCCCACAGAGAATGCATCCCCTG GGGCCCCCCTCAGCCTCTCCCTACAGAGAATGCATCCCCTG < 41bp 0.572431415284928 0.785006009461086 0.13528359 0.30997038 prediction 0.425149188352314 Functional Gain - CEACAM3 ENSG00000170956 CDS Human protein_coding chr19:42300633 chr19:42300634 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_123341 0 0 0 1 1 CEACAM3 chr19:42300673 5'GT 42300673 Upstream 40bp
chr1 150956469 150956469 1 + T C rs143089777 150956467 + 150956447 150956487 41 TCAGGCGTGGACCGCAGTGCCATTGTGGACGTGCTGACCAA TCAGGCGTGGACCGCAGTGCCACTGTGGACGTGCTGACCAA < 41bp 0.436495334649311 0.712573856912627 0.013858646 0.013866991 prediction 0.425147713825254 Functional Gain - ANXA9 ENSG00000143412 CDS Human protein_coding chr1:150956467 chr1:150956469 nonsynonymous SNV 0.116 2 23 hm5C_associated_SNPs_123342 0 0 0 0 2 ANXA9 chr1:150956451 3'AG 150956451 Downstream 19bp
chr1 150956469 150956469 1 + T C rs143089777 150956467 + 150956447 150956487 41 TCAGGCGTGGACCGCAGTGCCATTGTGGACGTGCTGACCAA TCAGGCGTGGACCGCAGTGCCACTGTGGACGTGCTGACCAA < 41bp 0.436495334649311 0.712573856912627 0.013858646 0.013866991 prediction 0.425147713825254 Functional Gain - ANXA9 ENSG00000143412 CDS Human protein_coding chr1:150956467 chr1:150956469 nonsynonymous SNV 0.116 2 23 hm5C_associated_SNPs_123342 0 0 0 0 2 ANXA9 chr1:150956545 5'GT 150956545 Upstream 77bp
chrX 36089992 36089992 1 + C T BLCA 36089991 + 36089971 36090011 41 GATGGTGTTTTGCCTCCCTACCAGGATGCTAAACCACCCTC GATGGTGTTTTGCCTCCCTACTAGGATGCTAAACCACCCTC < 41bp 0.563666032475437 0.776237571673701 0.9064144 0.9017114 prediction 0.425143078396526 Functional Gain - CFAP47 ENSG00000176034 CDS Human other chrX:36089991 chrX:36089992 stopgain 0.000 0 22 hm5C_associated_SNPs_123343 0 0 0 0 2 CFAP47 chrX:36089942 3'AG 36089942 Downstream 51bp
chrX 36089992 36089992 1 + C T BLCA 36089991 + 36089971 36090011 41 GATGGTGTTTTGCCTCCCTACCAGGATGCTAAACCACCCTC GATGGTGTTTTGCCTCCCTACTAGGATGCTAAACCACCCTC < 41bp 0.563666032475437 0.776237571673701 0.9064144 0.9017114 prediction 0.425143078396526 Functional Gain - CFAP47 ENSG00000176034 CDS Human other chrX:36089991 chrX:36089992 stopgain 0.000 0 22 hm5C_associated_SNPs_123343 0 0 0 0 2 CFAP47 chrX:36090088 5'GT 36090088 Upstream 97bp
chr7 135304215 135304215 1 + C T rs11550518 135304214 + 135304194 135304234 41 AGAGTTAATGCCTGTGGTCGCCGGGGCAGTGTTCACACTGA AGAGTTAATGCCTGTGGTCGCTGGGGCAGTGTTCACACTGA < 41bp 0.578710896148833 0.791282039754454 0.9149195 0.6685839 prediction 0.425142287211243 Functional Gain - NUP205 ENSG00000155561 CDS Human protein_coding chr7:135304214 chr7:135304215 synonymous SNV . 0 22 hm5C_associated_SNPs_123344 0 0 1 0 1 NUP205 chr7:135304171 3'AG 135304171 Downstream 45bp
chr3 46940823 46940823 1 + C A UCEC 46940819 + 46940799 46940839 41 TGCAGGGTGGCTGTGACCTTCTTCCTTTACTTCCTGGCCAC TGCAGGGTGGCTGTGACCTTCTTCATTTACTTCCTGGCCAC < 41bp 0.277141018310896 0.712563182488093 0.32301027 0.34710807 prediction 0.425126364976187 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46940819 chr3:46940823 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_123347 0 0 0 0 1 PTH1R chr3:46940793 3'AG 46940793 Downstream 31bp
chr5 139917069 139917069 1 + C T DLBC 139917068 + 139917048 139917088 41 ATTGGAACAGAGAGACTGGCCCGAATTCGGCAAGGAGGGTC ATTGGAACAGAGAGACTGGCCTGAATTCGGCAAGGAGGGTC < 41bp 0.463127771383399 0.712560678117832 0.19483903 0.19549674 prediction 0.425121356235663 Functional Gain - ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139917068 chr5:139917069 stopgain 0.996 1 22 hm5C_associated_SNPs_123348 0 0 1 0 1 ANKHD1;ANKHD1-EIF4EBP3 chr5:139916974 3'AG 139916974 Downstream 96bp
chr1 50666530 50666530 1 + C A LUAD 50666526 + 50666506 50666546 41 TCTGCTTGTCCCCCCAGGTTCTCCCCAATTACCATTGATGG TCTGCTTGTCCCCCCAGGTTCTCCACAATTACCATTGATGG < 41bp 0.29029014899091 0.712554633656725 0.12173408 0.9050265 prediction 0.42510926731345 Functional Gain - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50666526 chr1:50666530 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_123351 0 0 0 0 2 ELAVL4 chr1:50666481 3'AG 50666481 Downstream 50bp
chr1 50666530 50666530 1 + C A LUAD 50666526 + 50666506 50666546 41 TCTGCTTGTCCCCCCAGGTTCTCCCCAATTACCATTGATGG TCTGCTTGTCCCCCCAGGTTCTCCACAATTACCATTGATGG < 41bp 0.29029014899091 0.712554633656725 0.12173408 0.9050265 prediction 0.42510926731345 Functional Gain - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50666526 chr1:50666530 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_123351 0 0 0 0 2 ELAVL4 chr1:50666523 3'AG 50666523 Downstream 8bp
chr5 162945258 162945258 1 + C G STAD 162945257 + 162945237 162945277 41 AAATGCTCAGCTTGACTGCTCCAAATTGGAGACCTTGGGCA AAATGCTCAGCTTGACTGCTCGAAATTGGAGACCTTGGGCA < 41bp 0.645814303081288 0.858368868632382 0.043422163 0.25437787 prediction 0.425109131102189 Functional Gain - MAT2B ENSG00000038274 CDS Human protein_coding chr5:162945257 chr5:162945258 synonymous SNV . 0 22 hm5C_associated_SNPs_123352 0 0 1 0 1 MAT2B chr5:162945199 3'AG 162945199 Downstream 60bp
chr8 17402077 17402077 1 + C T SKCM 17402076 + 17402056 17402096 41 ACACTGGTCTTGCAGAATATCCCGATTTTTTTGCTGTGTGC ACACTGGTCTTGCAGAATATCTCGATTTTTTTGCTGTGTGC < 41bp 0.62330849656856 0.83585283199263 0.14772215 0.89752823 prediction 0.425088670848139 Functional Gain - SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17402076 chr8:17402077 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_123354 0 0 1 0 1 SLC7A2 chr8:17402115 5'GT 17402115 Upstream 39bp
chr12 53819354 53819354 1 + C T BLCA 53819353 + 53819333 53819373 41 GCTGCCTGAGCTGTGTTTCTCCCAGGTGCCCCAGGGAGGGA GCTGCCTGAGCTGTGTTTCTCTCAGGTGCCCCAGGGAGGGA < 41bp 0.575102009905886 0.787634700734767 0.39294085 0.10227874 prediction 0.425065381657762 Functional Gain - AMHR2 ENSG00000135409 CDS Human protein_coding chr12:53819353 chr12:53819354 synonymous SNV . 0 22 hm5C_associated_SNPs_123362 0 0 1 0 1 AMHR2 chr12:53819357 5'GT 53819357 Upstream 4bp
chr20 43850392 43850392 1 + C T SKCM 43850391 + 43850371 43850411 41 CAAGCGGATCTTCCCAATTTCCACATGGACAAAAGGGCCAG CAAGCGGATCTTCCCAATTTCTACATGGACAAAAGGGCCAG < 41bp 0.586141493030979 0.798671292695539 0.37601256 0.9511795 prediction 0.42505959932912 Functional Gain - SEMG2 ENSG00000124157 CDS Human protein_coding chr20:43850391 chr20:43850392 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_123365 0 0 0 0 1 SEMG2 chr20:43850350 3'AG 43850350 Downstream 43bp
chr2 179407042 179407042 1 + C T UCEC 179407041 + 179407021 179407061 41 ACTGCAAGTAAGAGCCAATCCCGAAGCGGTTTGTTGCAGCC ACTGCAAGTAAGAGCCAATCCTGAAGCGGTTTGTTGCAGCC < 41bp 0.568918407522347 0.781445009806113 0.52247244 0.26676202 prediction 0.425053204567533 Functional Gain - TTN ENSG00000155657 CDS Human antisense chr2:179407041 chr2:179407042 nonsynonymous SNV 0.987 3 22 hm5C_associated_SNPs_123366 2 0 1 0 2 TTN-AS1 chr2:179406949 3'AG 179406949 Downstream 94bp
chr2 179407042 179407042 1 + C T UCEC 179407041 + 179407021 179407061 41 ACTGCAAGTAAGAGCCAATCCCGAAGCGGTTTGTTGCAGCC ACTGCAAGTAAGAGCCAATCCTGAAGCGGTTTGTTGCAGCC < 41bp 0.568918407522347 0.781445009806113 0.52247244 0.26676202 prediction 0.425053204567533 Functional Gain - TTN ENSG00000155657 CDS Human protein_coding chr2:179407041 chr2:179407042 nonsynonymous SNV 0.987 3 22 hm5C_associated_SNPs_123366 2 0 1 0 2 TTN chr2:179407088 5'GT 179407088 Upstream 47bp
chr2 96078441 96078441 1 + C T UCEC 96078440 + 96078420 96078460 41 TCCAGGTTTGTTACCTTTTACCCAGGGGATGTCATCCTAAC TCCAGGTTTGTTACCTTTTACTCAGGGGATGTCATCCTAAC < 41bp 0.451678486405409 0.712521364870019 0.06800562 0.012345225 prediction 0.425042729740039 Functional Gain - FAHD2A ENSG00000115042 CDS Human protein_coding chr2:96078440 chr2:96078441 nonsynonymous SNV 0.993 5 22 hm5C_associated_SNPs_123367 0 0 1 0 2 FAHD2A chr2:96078425 3'AG 96078425 Downstream 17bp
chr2 96078441 96078441 1 + C T UCEC 96078440 + 96078420 96078460 41 TCCAGGTTTGTTACCTTTTACCCAGGGGATGTCATCCTAAC TCCAGGTTTGTTACCTTTTACTCAGGGGATGTCATCCTAAC < 41bp 0.451678486405409 0.712521364870019 0.06800562 0.012345225 prediction 0.425042729740039 Functional Gain - FAHD2A ENSG00000115042 CDS Human protein_coding chr2:96078440 chr2:96078441 nonsynonymous SNV 0.993 5 22 hm5C_associated_SNPs_123367 0 0 1 0 2 FAHD2A chr2:96078512 5'GT 96078512 Upstream 72bp
chr1 93303161 93303161 1 + T C GBM 93303158 + 93303138 93303178 41 CTTACAAGAAACAGTTCTCTCAATACATAAAGAACAGCGTA CTTACAAGAAACAGTTCTCTCAACACATAAAGAACAGCGTA < 41bp 0.509367815675948 0.721886658703527 0.296816 0.42300257 prediction 0.425037686055157 Functional Gain - RPL5 ENSG00000122406 CDS Human protein_coding chr1:93303158 chr1:93303161 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_123368 0 0 1 0 1 RPL5 chr1:93303190 5'GT 93303190 Upstream 30bp
chr5 180661274 180661274 1 + C G rs78013120 180661270 + 180661250 180661290 41 AGAGCGGCGGCAGGAGGTTGCTGACCATCCCAAGCGCTTCT AGAGCGGCGGCAGGAGGTTGCTGAGCATCCCAAGCGCTTCT < 41bp 0.635800440953724 0.84831455343488 0.1706056 0.33462 prediction 0.425028224962311 Functional Gain - TRIM41 ENSG00000146063 CDS Human protein_coding chr5:180661270 chr5:180661274 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_123369 0 0 0 0 1 TRIM41 chr5:180661349 5'GT 180661349 Upstream 76bp
chr19 49459501 49459501 1 + C T COAD 49459500 + 49459480 49459520 41 TCCCCCCGAGAGGTCTTTTTCCGAGTGGCAGCTGACATGTT TCCCCCCGAGAGGTCTTTTTCTGAGTGGCAGCTGACATGTT < 41bp 0.593962748710085 0.806473483574249 0.90903807 0.83895844 prediction 0.42502146972833 Functional Gain - BAX ENSG00000087088 CDS Human protein_coding chr19:49459500 chr19:49459501 stopgain 1.000 1 22 hm5C_associated_SNPs_123370 0 0 1 7 2 BAX chr19:49459455 3'AG 49459455 Downstream 47bp
chr19 49459501 49459501 1 + C T COAD 49459500 + 49459480 49459520 41 TCCCCCCGAGAGGTCTTTTTCCGAGTGGCAGCTGACATGTT TCCCCCCGAGAGGTCTTTTTCTGAGTGGCAGCTGACATGTT < 41bp 0.593962748710085 0.806473483574249 0.90903807 0.83895844 prediction 0.42502146972833 Functional Gain - BAX ENSG00000087088 CDS Human protein_coding chr19:49459500 chr19:49459501 stopgain 1.000 1 22 hm5C_associated_SNPs_123370 0 0 1 7 2 BAX chr19:49459590 5'GT 49459590 Upstream 90bp
chr19 7976183 7976183 1 + C T LUAD 7976182 + 7976162 7976202 41 ACCAAGCCGGACTATGACATCCGGGCCGACGTATGGAGCCT ACCAAGCCGGACTATGACATCTGGGCCGACGTATGGAGCCT < 41bp 0.597691007092349 0.810200134689321 0.2126792 0.12043911 prediction 0.425018255193943 Functional Gain - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7976182 chr19:7976183 nonsynonymous SNV 0.904 4 22 hm5C_associated_SNPs_123373 0 0 1 0 2 MAP2K7 chr19:7976135 3'AG 7976135 Downstream 49bp
chr19 7976183 7976183 1 + C T LUAD 7976182 + 7976162 7976202 41 ACCAAGCCGGACTATGACATCCGGGCCGACGTATGGAGCCT ACCAAGCCGGACTATGACATCTGGGCCGACGTATGGAGCCT < 41bp 0.597691007092349 0.810200134689321 0.2126792 0.12043911 prediction 0.425018255193943 Functional Gain - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7976182 chr19:7976183 nonsynonymous SNV 0.904 4 22 hm5C_associated_SNPs_123373 0 0 1 0 2 MAP2K7 chr19:7976215 5'GT 7976215 Upstream 33bp
chr14 21238342 21238342 1 + C A UCEC 21238338 + 21238318 21238358 41 GTCTCTAAAGATCTGGGGCACACTCTTGGCCCTACTTTGCA GTCTCTAAAGATCTGGGGCACACTATTGGCCCTACTTTGCA < 41bp 0.315327649087724 0.712498294980708 0.008808196 0.022107244 prediction 0.424996589961417 Functional Gain - EDDM3B ENSG00000181552 CDS Human protein_coding chr14:21238338 chr14:21238342 synonymous SNV . 0 25 hm5C_associated_SNPs_123378 0 0 0 0 1 EDDM3B chr14:21238292 3'AG 21238292 Downstream 51bp
chr12 49937813 49937813 1 + A G rs1150057 49937810 + 49937790 49937830 41 TGGTTCCTGCTGGATGTCATCGCAGCGCTGCCCTTTGACCT TGGTTCCTGCTGGATGTCATCGCGGCGCTGCCCTTTGACCT < 41bp 0.610273302894075 0.822770097125989 0.8849204 0.94608295 prediction 0.424993588463827 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49937810 chr12:49937813 synonymous SNV . 0 24 hm5C_associated_SNPs_123379 0 0 0 0 1 KCNH3 chr12:49937855 5'GT 49937855 Upstream 43bp
chr21 45706476 45706476 1 + C G rs200955183 45706475 + 45706455 45706495 41 AAGGAAAAGGAGGGCTGCCCCCAGGCCTTCCACGCCCTCCT AAGGAAAAGGAGGGCTGCCCCGAGGCCTTCCACGCCCTCCT < 41bp 0.684034019241213 0.896521474532993 0.75680304 0.9215394 prediction 0.424974910583559 Functional Gain - AIRE ENSG00000160224 CDS Human protein_coding chr21:45706475 chr21:45706476 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_123382 0 0 0 0 1 AIRE chr21:45706440 3'AG 45706440 Downstream 37bp
chr17 3560036 3560036 1 + C G rs531995684 3560032 + 3560012 3560052 41 AACAGCAACGACGTCTTCTTCAGCCTGCACGCGGTTGTCCT AACAGCAACGACGTCTTCTTCAGCGTGCACGCGGTTGTCCT < 41bp 0.403710201481154 0.712481626278474 0.2675621 0.65660346 prediction 0.424963252556948 Functional Gain - CTNS ENSG00000040531 CDS Human protein_coding chr17:3560032 chr17:3560036 nonsynonymous SNV 0.916 2 25 hm5C_associated_SNPs_123385 0 0 0 0 2 CTNS chr17:3559970 3'AG 3559970 Downstream 67bp
chr17 3560036 3560036 1 + C G rs531995684 3560032 + 3560012 3560052 41 AACAGCAACGACGTCTTCTTCAGCCTGCACGCGGTTGTCCT AACAGCAACGACGTCTTCTTCAGCGTGCACGCGGTTGTCCT < 41bp 0.403710201481154 0.712481626278474 0.2675621 0.65660346 prediction 0.424963252556948 Functional Gain - CTNS ENSG00000040531 CDS Human protein_coding chr17:3560032 chr17:3560036 nonsynonymous SNV 0.916 2 25 hm5C_associated_SNPs_123385 0 0 0 0 2 CTNS chr17:3560089 5'GT 3560089 Upstream 54bp
chr9 96398726 96398726 1 + C T rs143115147 96398725 + 96398705 96398745 41 GGACCTGGCACAAACACGGCCCGGGGCAAGCGCCTGACGTC GGACCTGGCACAAACACGGCCTGGGGCAAGCGCCTGACGTC < 41bp 0.463238362289805 0.712471505817999 0.20151573 0.14551318 prediction 0.424943011635998 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96398725 chr9:96398726 nonsynonymous SNV 0.222 0 22 hm5C_associated_SNPs_123387 0 0 0 0 2 PHF2 chr9:96398693 3'AG 96398693 Downstream 34bp
chr9 96398726 96398726 1 + C T rs143115147 96398725 + 96398705 96398745 41 GGACCTGGCACAAACACGGCCCGGGGCAAGCGCCTGACGTC GGACCTGGCACAAACACGGCCTGGGGCAAGCGCCTGACGTC < 41bp 0.463238362289805 0.712471505817999 0.20151573 0.14551318 prediction 0.424943011635998 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96398725 chr9:96398726 nonsynonymous SNV 0.222 0 22 hm5C_associated_SNPs_123387 0 0 0 0 2 PHF2 chr9:96398807 5'GT 96398807 Upstream 82bp
chr12 132632238 132632238 1 + C G rs202227049 132632237 + 132632217 132632257 41 AGCCTGCTCCTGTCCCAGTTCCGGGAGTACCTGGACTACGA AGCCTGCTCCTGTCCCAGTTCGGGGAGTACCTGGACTACGA < 41bp 0.68781272433109 0.900279907150778 0.9126549 0.9259385 prediction 0.424934365639378 Functional Gain - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132632237 chr12:132632238 nonsynonymous SNV 0.948 1 22 hm5C_associated_SNPs_123389 0 0 1 0 2 NOC4L chr12:132632178 3'AG 132632178 Downstream 61bp
chr12 132632238 132632238 1 + C G rs202227049 132632237 + 132632217 132632257 41 AGCCTGCTCCTGTCCCAGTTCCGGGAGTACCTGGACTACGA AGCCTGCTCCTGTCCCAGTTCGGGGAGTACCTGGACTACGA < 41bp 0.68781272433109 0.900279907150778 0.9126549 0.9259385 prediction 0.424934365639378 Functional Gain - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132632237 chr12:132632238 nonsynonymous SNV 0.948 1 22 hm5C_associated_SNPs_123389 0 0 1 0 2 NOC4L chr12:132632327 5'GT 132632327 Upstream 90bp
chr10 5141639 5141639 1 + C T rs140580498 5141638 + 5141618 5141658 41 AAGTACAAGCCTGTCTGCAACCAGGTGAGCTCCCTTGGCCT AAGTACAAGCCTGTCTGCAACTAGGTGAGCTCCCTTGGCCT < 41bp 0.600970156836374 0.813435241579651 0.9360868 0.88058376 prediction 0.424930169486552 Functional Gain - AKR1C3 ENSG00000196139 CDS Human protein_coding chr10:5141638 chr10:5141639 stopgain 1.000 1 22 hm5C_associated_SNPs_123390 0 0 1 0 1 AKR1C3 chr10:5141641 5'GT 5141641 Upstream 3bp
chr14 24843545 24843545 1 + C A LIHC 24843544 + 24843524 24843564 41 CTCTGCAGCCCAGCGCTCAGCCCAGGAGCTGCCCCAGGTGG CTCTGCAGCCCAGCGCTCAGCACAGGAGCTGCCCCAGGTGG < 41bp 0.53836448857849 0.750820039949872 0.2718242 0.470603 prediction 0.424911102742764 Functional Gain - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24843544 chr14:24843545 synonymous SNV . 0 22 hm5C_associated_SNPs_123395 0 0 0 0 1 NFATC4 chr14:24843532 3'AG 24843532 Downstream 14bp
chr19 50212054 50212054 1 + A G rs181225621 50212051 + 50212031 50212071 41 TGCAAGGGGCACCCGGACCCCACACTACCCCAGCCCCAGCG TGCAAGGGGCACCCGGACCCCACGCTACCCCAGCCCCAGCG < 41bp 0.465193712692261 0.712452649733039 0.08691689 0.05552718 prediction 0.424905299466079 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50212051 chr19:50212054 synonymous SNV . 0 24 hm5C_associated_SNPs_123397 0 0 0 0 2 CPT1C chr19:50211980 3'AG 50211980 Downstream 75bp
chr19 50212054 50212054 1 + A G rs181225621 50212051 + 50212031 50212071 41 TGCAAGGGGCACCCGGACCCCACACTACCCCAGCCCCAGCG TGCAAGGGGCACCCGGACCCCACGCTACCCCAGCCCCAGCG < 41bp 0.465193712692261 0.712452649733039 0.08691689 0.05552718 prediction 0.424905299466079 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50212051 chr19:50212054 synonymous SNV . 0 24 hm5C_associated_SNPs_123397 0 0 0 0 2 CPT1C chr19:50212096 5'GT 50212096 Upstream 43bp
chr2 120395970 120395970 1 + C G LUAD 120395969 + 120395949 120395989 41 GGGTCCAGCATTCCTGTCACCCAAAAGCAGTTTCTCCATCA GGGTCCAGCATTCCTGTCACCGAAAAGCAGTTTCTCCATCA < 41bp 0.397472249132206 0.712446329390353 0.021299511 0.14514083 prediction 0.424892658780706 Functional Gain - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120395969 chr2:120395970 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_123400 0 0 0 0 1 CFAP221 chr2:120395993 5'GT 120395993 Upstream 24bp
chr11 92703096 92703096 1 + C T ESCA 92703095 + 92703075 92703115 41 ATCCTCTCCGTGCTCAGGAACCGCAAGCTCCGGAACGCAGG ATCCTCTCCGTGCTCAGGAACTGCAAGCTCCGGAACGCAGG < 41bp 0.470404863653632 0.712439602961954 0.19376677 0.37581012 prediction 0.424879205923908 Functional Gain - MTNR1B ENSG00000134640 CDS Human protein_coding chr11:92703095 chr11:92703096 nonsynonymous SNV 0.437 4 22 hm5C_associated_SNPs_123403 0 0 0 0 1 MTNR1B chr11:92703114 5'GT 92703114 Upstream 19bp
chr7 73768332 73768332 1 + C A LGG 73768331 + 73768311 73768351 41 TGATGGGGCGGTGGCGGGCACCAGGTATGGTGGGCTTCTTC TGATGGGGCGGTGGCGGGCACAAGGTATGGTGGGCTTCTTC < 41bp 0.439921450062 0.712436749126655 0.79839945 0.79602057 prediction 0.42487349825331 Functional Gain - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73768331 chr7:73768332 synonymous SNV . 0 22 hm5C_associated_SNPs_123404 0 0 1 0 1 CLIP2 chr7:73768334 5'GT 73768334 Upstream 3bp
chr19 18974273 18974273 1 + C T UCEC 18974272 + 18974252 18974292 41 GCGTCATCATTGTGGGCAACCCGAAGGCACTATCAAAGCAG GCGTCATCATTGTGGGCAACCTGAAGGCACTATCAAAGCAG < 41bp 0.453295383735858 0.71243574448039 0.3039058 0.3044593 prediction 0.42487148896078 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18974272 chr19:18974273 nonsynonymous SNV 0.955 4 22 hm5C_associated_SNPs_123406 0 0 1 0 1 UPF1 chr19:18974247 3'AG 18974247 Downstream 27bp
chr10 103360560 103360560 1 + C A rs143867323 103360559 + 103360539 103360579 41 TGGCAGCTTGAAGTAGGAGACCCAGCGCCCCTAGGAGCAGG TGGCAGCTTGAAGTAGGAGACACAGCGCCCCTAGGAGCAGG < 41bp 0.439092987717589 0.712435631458976 0.27711308 0.18147805 prediction 0.424871262917953 Functional Gain - DPCD ENSG00000166171 CDS Human protein_coding chr10:103360559 chr10:103360560 nonsynonymous SNV 0.961 1 22 hm5C_associated_SNPs_123407 0 0 1 0 2 DPCD chr10:103360495 3'AG 103360495 Downstream 66bp
chr10 103360560 103360560 1 + C A rs143867323 103360559 + 103360539 103360579 41 TGGCAGCTTGAAGTAGGAGACCCAGCGCCCCTAGGAGCAGG TGGCAGCTTGAAGTAGGAGACACAGCGCCCCTAGGAGCAGG < 41bp 0.439092987717589 0.712435631458976 0.27711308 0.18147805 prediction 0.424871262917953 Functional Gain - DPCD ENSG00000166171 CDS Human protein_coding chr10:103360559 chr10:103360560 nonsynonymous SNV 0.961 1 22 hm5C_associated_SNPs_123407 0 0 1 0 2 DPCD chr10:103360619 5'GT 103360619 Upstream 60bp
chr19 55889191 55889191 1 + T G LUAD 55889189 + 55889169 55889209 41 GAAAACGTGCGGAGGAAGCACATGTGGGCGCTGGTCTGGAC GAAAACGTGCGGAGGAAGCACAGGTGGGCGCTGGTCTGGAC < 41bp 0.702358208146332 0.914788461463253 0.40950802 0.71342516 prediction 0.424860506633842 Functional Gain - TMEM190 ENSG00000160472 CDS Human protein_coding chr19:55889189 chr19:55889191 nonsynonymous SNV 0.616 1 23 hm5C_associated_SNPs_123408 0 0 0 0 1 TMEM190 chr19:55889170 3'AG 55889170 Downstream 22bp
chr17 4796286 4796286 1 + C T rs11556635 4796285 + 4796265 4796305 41 GCCGTCCAGTCTCCTCCAAACCGGACAGCTCCCCTGTGCTC GCCGTCCAGTCTCCTCCAAACTGGACAGCTCCCCTGTGCTC < 41bp 0.611759238526952 0.824188741196207 0.37551293 0.35366145 prediction 0.424859005338511 Functional Gain - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4796285 chr17:4796286 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_123409 0 0 1 0 2 MINK1 chr17:4796274 3'AG 4796274 Downstream 13bp
chr17 4796286 4796286 1 + C T rs11556635 4796285 + 4796265 4796305 41 GCCGTCCAGTCTCCTCCAAACCGGACAGCTCCCCTGTGCTC GCCGTCCAGTCTCCTCCAAACTGGACAGCTCCCCTGTGCTC < 41bp 0.611759238526952 0.824188741196207 0.37551293 0.35366145 prediction 0.424859005338511 Functional Gain - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4796285 chr17:4796286 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_123409 0 0 1 0 2 MINK1 chr17:4796362 5'GT 4796362 Upstream 77bp
chr17 2221222 2221222 1 + C T UCEC 2221221 + 2221201 2221241 41 CTGATGCTTTAGAAAGGAAGCCGAAAGCTGTTGTTACTCAC CTGATGCTTTAGAAAGGAAGCTGAAAGCTGTTGTTACTCAC < 41bp 0.603176679662101 0.815605289332441 0.3042644 0.30723572 prediction 0.424857219340681 Functional Gain - SRR ENSG00000167720 CDS Human protein_coding chr17:2221221 chr17:2221222 nonsynonymous SNV 0.990 2 22 hm5C_associated_SNPs_123411 0 0 1 0 1 SRR chr17:2221164 3'AG 2221164 Downstream 59bp
chr10 50835806 50835806 1 + C T COAD 50835805 + 50835785 50835825 41 TGACGGGAGGAGCGAGTGGGCCGAGGCCAGGACGGTCCTCG TGACGGGAGGAGCGAGTGGGCTGAGGCCAGGACGGTCCTCG < 41bp 0.539954508229873 0.752379823943229 0.47591585 0.27517396 prediction 0.424850631426712 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50835805 chr10:50835806 synonymous SNV . 0 22 hm5C_associated_SNPs_123413 0 0 0 0 1 CHAT chr10:50835831 5'GT 50835831 Upstream 26bp
chr10 26994239 26994239 1 + T C UCEC 26994236 + 26994216 26994256 41 TTTCATCACACAACCCCAGACAGTAAAACACACAGTGGTGA TTTCATCACACAACCCCAGACAGCAAAACACACAGTGGTGA < 41bp 0.48382120549962 0.712419378006926 0.49964815 0.2723046 prediction 0.424838756013852 Functional Gain - PDSS1 ENSG00000148459 CDS Human protein_coding chr10:26994236 chr10:26994239 synonymous SNV . 0 24 hm5C_associated_SNPs_123414 0 0 1 0 2 PDSS1 chr10:26994215 3'AG 26994215 Downstream 25bp
chr10 26994239 26994239 1 + T C UCEC 26994236 + 26994216 26994256 41 TTTCATCACACAACCCCAGACAGTAAAACACACAGTGGTGA TTTCATCACACAACCCCAGACAGCAAAACACACAGTGGTGA < 41bp 0.48382120549962 0.712419378006926 0.49964815 0.2723046 prediction 0.424838756013852 Functional Gain - PDSS1 ENSG00000148459 CDS Human protein_coding chr10:26994236 chr10:26994239 synonymous SNV . 0 24 hm5C_associated_SNPs_123414 0 0 1 0 2 PDSS1 chr10:26994323 5'GT 26994323 Upstream 85bp
chr1 31194201 31194201 1 + C G rs368866117 31194200 + 31194180 31194220 41 TGCAGGCAAAGCTCATAACTCCGAGCGGGAGCCTCCAAACA TGCAGGCAAAGCTCATAACTCGGAGCGGGAGCCTCCAAACA < 41bp 0.407140984244054 0.71241823448798 0.85723853 0.9188745 prediction 0.424836468975959 Functional Gain - MATN1-AS1 ENSG00000186056 ncRNA_exonic Human antisense chr1:31194200 chr1:31194201 . . 0 22 hm5C_associated_SNPs_123416 0 0 0 0 1 MATN1-AS1 chr1:31194135 3'AG 31194135 Downstream 67bp
chr15 79165370 79165370 1 + A G UCEC 79165367 + 79165347 79165387 41 GAATCACTTATAAATGGCGCCGAAGCAGGACCCGAAGCCTA GAATCACTTATAAATGGCGCCGAGGCAGGACCCGAAGCCTA < 41bp 0.52419695467329 0.736606506836729 0.28797412 0.6070312 prediction 0.424819104326878 Functional Gain - MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79165367 chr15:79165370 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_123420 0 0 1 0 1 MORF4L1 chr15:79165460 5'GT 79165460 Upstream 91bp
chr2 85531073 85531073 1 + C A THCA 85531072 + 85531052 85531092 41 ACCGTATTACCCACTCTCTCCCGGAGCTGTCGGACAAATCC ACCGTATTACCCACTCTCTCCAGGAGCTGTCGGACAAATCC < 41bp 0.62413995082445 0.836546761647561 0.931286 0.92349756 prediction 0.424813621646221 Functional Gain - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85531072 chr2:85531073 synonymous SNV . 0 22 hm5C_associated_SNPs_123423 0 0 0 0 2 TCF7L1 chr2:85531018 3'AG 85531018 Downstream 56bp
chr2 85531073 85531073 1 + C A THCA 85531072 + 85531052 85531092 41 ACCGTATTACCCACTCTCTCCCGGAGCTGTCGGACAAATCC ACCGTATTACCCACTCTCTCCAGGAGCTGTCGGACAAATCC < 41bp 0.62413995082445 0.836546761647561 0.931286 0.92349756 prediction 0.424813621646221 Functional Gain - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85531072 chr2:85531073 synonymous SNV . 0 22 hm5C_associated_SNPs_123423 0 0 0 0 2 TCF7L1 chr2:85531120 5'GT 85531120 Upstream 48bp
chr1 35852656 35852656 1 + A G LIHC 35852653 + 35852633 35852673 41 TTCTTCAGTAGTGCCCTTGTCTCAGGGCCAAGTAATTGTAA TTCTTCAGTAGTGCCCTTGTCTCGGGGCCAAGTAATTGTAA < 41bp 0.563708917816068 0.776115526556113 0.06399417 0.16811532 prediction 0.42481321748009 Functional Gain - ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35852653 chr1:35852656 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_123424 0 0 1 0 1 ZMYM4 chr1:35852604 3'AG 35852604 Downstream 53bp
chr5 50683421 50683421 1 + C T UCEC 50683420 + 50683400 50683440 41 GTGTATCACATCGAGTGTTTCCGCTGTGTGGCCTGCAGCCG GTGTATCACATCGAGTGTTTCTGCTGTGTGGCCTGCAGCCG < 41bp 0.602936601728988 0.815343162615442 0.14258036 0.13949701 prediction 0.424813121772907 Functional Gain - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50683420 chr5:50683421 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_123425 0 0 1 0 1 ISL1 chr5:50683324 3'AG 50683324 Downstream 98bp
chrX 109247361 109247361 1 + T G UCEC 109247357 + 109247337 109247377 41 CCACCAAGACCGTCATCTACCTGCTCAACCCCTGTCACCTG CCACCAAGACCGTCATCTACCTGCGCAACCCCTGTCACCTG < 41bp 0.508648454967878 0.721053810342515 0.099742204 0.17777371 prediction 0.424810710749274 Functional Gain - TMEM164 ENSG00000157600 CDS Human protein_coding chrX:109247357 chrX:109247361 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_123426 0 0 1 0 1 TMEM164 chrX:109247392 5'GT 109247392 Upstream 32bp
chr14 24647314 24647314 1 + C T HNSC 24647313 + 24647293 24647333 41 ACAGAGGAGGCCCCCAGTCCCCCCACCTCCTCGCCGCCGCC ACAGAGGAGGCCCCCAGTCCCTCCACCTCCTCGCCGCCGCC < 41bp 0.6291023423944 0.841504980634565 0.3241022 0.9543474 prediction 0.424805276480329 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24647313 chr14:24647314 synonymous SNV . 0 22 hm5C_associated_SNPs_123427 0 0 0 0 1 REC8 chr14:24647297 3'AG 24647297 Downstream 18bp
chr11 44148425 44148425 1 + T C rs61733300 44148422 + 44148402 44148442 41 CTGGGCCAGGCAGTATTGAGCGATGTGTTACAAGCTGGCTG CTGGGCCAGGCAGTATTGAGCGACGTGTTACAAGCTGGCTG < 41bp 0.527520947192195 0.739922963935359 0.7861972 0.87244165 prediction 0.424804033486327 Functional Gain - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44148422 chr11:44148425 synonymous SNV . 0 24 hm5C_associated_SNPs_123428 1 0 1 0 2 EXT2 chr11:44148366 3'AG 44148366 Downstream 60bp
chr11 44148425 44148425 1 + T C rs61733300 44148422 + 44148402 44148442 41 CTGGGCCAGGCAGTATTGAGCGATGTGTTACAAGCTGGCTG CTGGGCCAGGCAGTATTGAGCGACGTGTTACAAGCTGGCTG < 41bp 0.527520947192195 0.739922963935359 0.7861972 0.87244165 prediction 0.424804033486327 Functional Gain - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44148422 chr11:44148425 synonymous SNV . 0 24 hm5C_associated_SNPs_123428 1 0 1 0 2 EXT2 chr11:44148505 5'GT 44148505 Upstream 81bp
chr3 147657828 147657828 1 + A G rs111971330 147657825 + 147657805 147657845 41 ACAGACAGGCGACAGCGTCGCTGAGCACCAACTTCTATTCC ACAGACAGGCGACAGCGTCGCTGGGCACCAACTTCTATTCC < 41bp 0.555984347601857 0.768379932214958 0.08127016 0.14732811 prediction 0.424791169226202 Functional Gain - LOC440982;LINC02032 ENSG00000239922 ncRNA_exonic Human lincRNA chr3:147657825 chr3:147657828 . . 0 24 hm5C_associated_SNPs_123431 0 0 0 0 1 LOC440982;LINC02032 chr3:147657903 5'GT 147657903 Upstream 76bp
chr4 152203537 152203537 1 + C T rs183837737 152203536 + 152203516 152203556 41 TCCACCCTTTTGTTGGGTGACCGGATGGGGAAAAGTTAAGG TCCACCCTTTTGTTGGGTGACTGGATGGGGAAAAGTTAAGG < 41bp 0.60339153271938 0.815786211012718 0.5576769 0.4006336 prediction 0.424789356586676 Functional Gain - PRSS48 ENSG00000189099 CDS Human protein_coding chr4:152203536 chr4:152203537 synonymous SNV . 0 22 hm5C_associated_SNPs_123433 0 0 0 0 1 PRSS48 chr4:152203565 5'GT 152203565 Upstream 29bp
chr1 220978575 220978575 1 + C T UCEC 220978574 + 220978554 220978594 41 AACCACAGTGGACCCAGACACCGGTGTCATGAGCAGGAAGG AACCACAGTGGACCCAGACACTGGTGTCATGAGCAGGAAGG < 41bp 0.45939919495877 0.712393204430276 0.35355136 0.35411036 prediction 0.424786408860553 Functional Gain - MARC1 ENSG00000186205 CDS Human protein_coding chr1:220978574 chr1:220978575 synonymous SNV . 0 22 hm5C_associated_SNPs_123434 0 0 1 0 2 MARC1 chr1:220978545 3'AG 220978545 Downstream 31bp
chr1 220978575 220978575 1 + C T UCEC 220978574 + 220978554 220978594 41 AACCACAGTGGACCCAGACACCGGTGTCATGAGCAGGAAGG AACCACAGTGGACCCAGACACTGGTGTCATGAGCAGGAAGG < 41bp 0.45939919495877 0.712393204430276 0.35355136 0.35411036 prediction 0.424786408860553 Functional Gain - MARC1 ENSG00000186205 CDS Human protein_coding chr1:220978574 chr1:220978575 synonymous SNV . 0 22 hm5C_associated_SNPs_123434 0 0 1 0 2 MARC1 chr1:220978616 5'GT 220978616 Upstream 42bp
chr2 102957199 102957199 1 + A G LUSC 102957196 + 102957176 102957216 41 GGTCATTGATAATGTGATGACTGAGGACGCAGGTGATTACA GGTCATTGATAATGTGATGACTGGGGACGCAGGTGATTACA < 41bp 0.471713754714956 0.712386514353861 0.03191912 0.25219387 prediction 0.424773028707722 Functional Gain - IL1RL1 ENSG00000115602 CDS Human protein_coding chr2:102957196 chr2:102957199 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_123437 0 0 0 0 1 IL1RL1 chr2:102957126 3'AG 102957126 Downstream 74bp
chr22 18613662 18613662 1 + A G SKCM 18613659 + 18613639 18613679 41 GGTCCCCGGGGGAGACCTGGCCAAGGTGCAGCGGGCCGTCT GGTCCCCGGGGGAGACCTGGCCAGGGTGCAGCGGGCCGTCT < 41bp 0.586707199184292 0.799086885194708 0.62723804 0.9162593 prediction 0.42475937202083 Functional Gain - TUBA8 ENSG00000183785 CDS Human protein_coding chr22:18613659 chr22:18613662 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_123441 0 0 0 0 1 TUBA8 chr22:18613610 3'AG 18613610 Downstream 53bp
chr16 847913 847913 1 + C G rs190105039 847912 + 847892 847932 41 GGCAGGAGCGAGGTCTGGTTCCGCTTCAACGAGGGTGTCTC GGCAGGAGCGAGGTCTGGTTCGGCTTCAACGAGGGTGTCTC < 41bp 0.392932247178596 0.712379656176808 0.36176953 0.8222444 prediction 0.424759312353615 Functional Gain - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:847912 chr16:847913 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_123442 0 0 1 0 1 CHTF18 chr16:847839 3'AG 847839 Downstream 75bp
chr5 169533532 169533532 1 + C T UCEC 169533531 + 169533511 169533551 41 GTGCCCCGCGACGAGGACGACCCGGGTAAGGAGGCTTTGAG GTGCCCCGCGACGAGGACGACTCGGGTAAGGAGGCTTTGAG < 41bp 0.59019327753632 0.802571547576016 0.73655343 0.4082556 prediction 0.424756540079392 Functional Gain - FOXI1 ENSG00000168269 CDS Human protein_coding chr5:169533531 chr5:169533532 nonsynonymous SNV 0.938 5 22 hm5C_associated_SNPs_123443 0 0 0 0 1 FOXI1 chr5:169533535 5'GT 169533535 Upstream 4bp
chr9 101778346 101778346 1 + C A rs35529307 101778342 + 101778322 101778362 41 GTGAAGAGTCCGGCAGCCCTCCCCCTGATGGGCCACCGCTG GTGAAGAGTCCGGCAGCCCTCCCCATGATGGGCCACCGCTG < 41bp 0.2941753684448 0.712376766252704 0.1118989 0.11906305 prediction 0.424753532505407 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101778342 chr9:101778346 nonsynonymous SNV 0.011 3 25 hm5C_associated_SNPs_123444 0 0 0 0 1 COL15A1 chr9:101778401 5'GT 101778401 Upstream 56bp
chr8 37971754 37971754 1 + C T SKCM 37971753 + 37971733 37971773 41 ATACTGGGAGTGCATGACAACCAGACAGAGACCTGGGAAAA ATACTGGGAGTGCATGACAACTAGACAGAGACCTGGGAAAA < 41bp 0.459625771660882 0.712376505757597 0.07830155 0.119886905 prediction 0.424753011515195 Functional Gain - ASH2L ENSG00000129691 CDS Human protein_coding chr8:37971753 chr8:37971754 synonymous SNV . 0 22 hm5C_associated_SNPs_123445 0 0 1 0 2 ASH2L chr8:37971710 3'AG 37971710 Downstream 45bp
chr8 37971754 37971754 1 + C T SKCM 37971753 + 37971733 37971773 41 ATACTGGGAGTGCATGACAACCAGACAGAGACCTGGGAAAA ATACTGGGAGTGCATGACAACTAGACAGAGACCTGGGAAAA < 41bp 0.459625771660882 0.712376505757597 0.07830155 0.119886905 prediction 0.424753011515195 Functional Gain - ASH2L ENSG00000129691 CDS Human protein_coding chr8:37971753 chr8:37971754 synonymous SNV . 0 22 hm5C_associated_SNPs_123445 0 0 1 0 2 ASH2L chr8:37971805 5'GT 37971805 Upstream 52bp
chr5 161117307 161117307 1 + C T SKCM 161117306 + 161117286 161117326 41 CATTATGACAGTCATTCTTTCCCAGGTGTCTTTCTGGATTA CATTATGACAGTCATTCTTTCTCAGGTGTCTTTCTGGATTA < 41bp 0.456336022475889 0.712368577493973 0.13780048 0.063866496 prediction 0.424737154987947 Functional Gain - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161117306 chr5:161117307 synonymous SNV . 0 22 hm5C_associated_SNPs_123449 0 0 0 0 1 GABRA6 chr5:161117359 5'GT 161117359 Upstream 53bp
chr19 50308734 50308734 1 + T C PAAD 50308732 + 50308712 50308752 41 CTGGCTGTGCAGACCAAGCGCGTGGCGGCGCAGGTGGACGG CTGGCTGTGCAGACCAAGCGCGCGGCGGCGCAGGTGGACGG < 41bp 0.626496233847768 0.838859981723359 0.65959185 0.84501874 prediction 0.424727495751181 Functional Gain - AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50308732 chr19:50308734 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_123450 0 0 1 0 1 AP2A1 chr19:50308833 5'GT 50308833 Upstream 100bp
chr19 14512302 14512302 1 + T C SKCM 14512300 + 14512280 14512320 41 CCACCCAGCTGCTCTCAAACCTTGAAGATATCATGAGGATC CCACCCAGCTGCTCTCAAACCTCGAAGATATCATGAGGATC < 41bp 0.64950066885171 0.861862505243088 0.22028676 0.8457264 prediction 0.424723672782755 Functional Gain - ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14512300 chr19:14512302 synonymous SNV . 0 23 hm5C_associated_SNPs_123452 0 0 1 0 1 ADGRE5 chr19:14512375 5'GT 14512375 Upstream 74bp
chr3 127396573 127396573 1 + C T rs35976576 127396572 + 127396552 127396592 41 GCCCTGCTGGATGACCACTTCCGAGAGAGCGAGGAGCCAGC GCCCTGCTGGATGACCACTTCTGAGAGAGCGAGGAGCCAGC < 41bp 0.450888755811245 0.712348225048797 0.10475835 0.17321688 prediction 0.424696450097593 Functional Gain - ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127396572 chr3:127396573 stopgain 0.581 0 22 hm5C_associated_SNPs_123460 0 0 0 0 1 ABTB1 chr3:127396519 3'AG 127396519 Downstream 55bp
chrX 55784694 55784694 1 + T C COAD 55784691 + 55784671 55784711 41 GCCCTCAGCTTCTGCAGCTACTCTGATCAACATCCGCAATG GCCCTCAGCTTCTGCAGCTACTCCGATCAACATCCGCAATG < 41bp 0.539181139210027 0.751527515444535 0.090902925 0.061823636 prediction 0.424692752469015 Functional Gain - RRAGB ENSG00000083750 CDS Human protein_coding chrX:55784691 chrX:55784694 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_123462 0 0 1 0 1 RRAGB chrX:55784679 3'AG 55784679 Downstream 16bp
chr8 145535234 145535234 1 + A G STAD 145535231 + 145535211 145535251 41 GTGGCTCAGCACATTCCATGCCCAAGTATAGCCGGCAGTTC GTGGCTCAGCACATTCCATGCCCGAGTATAGCCGGCAGTTC < 41bp 0.462391328806522 0.712343350323895 0.0772461 0.32862917 prediction 0.424686700647789 Functional Gain - HSF1 ENSG00000185122 CDS Human protein_coding chr8:145535231 chr8:145535234 nonsynonymous SNV 0.855 3 24 hm5C_associated_SNPs_123463 0 0 1 0 2 HSF1 chr8:145535191 3'AG 145535191 Downstream 44bp
chr8 145535234 145535234 1 + A G STAD 145535231 + 145535211 145535251 41 GTGGCTCAGCACATTCCATGCCCAAGTATAGCCGGCAGTTC GTGGCTCAGCACATTCCATGCCCGAGTATAGCCGGCAGTTC < 41bp 0.462391328806522 0.712343350323895 0.0772461 0.32862917 prediction 0.424686700647789 Functional Gain - HSF1 ENSG00000185122 CDS Human protein_coding chr8:145535231 chr8:145535234 nonsynonymous SNV 0.855 3 24 hm5C_associated_SNPs_123463 0 0 1 0 2 HSF1 chr8:145535287 5'GT 145535287 Upstream 54bp
chr12 120499627 120499627 1 + C T UCEC 120499626 + 120499606 120499646 41 CCGGCTGGAGAGCCTTCAGGCCGAGGTGAGCCTCCCGACAC CCGGCTGGAGAGCCTTCAGGCTGAGGTGAGCCTCCCGACAC < 41bp 0.595379412722339 0.807718044821011 0.7610493 0.34451124 prediction 0.424677264197344 Functional Gain - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120499626 chr12:120499627 synonymous SNV . 0 22 hm5C_associated_SNPs_123465 0 0 0 0 1 BICDL1 chr12:120499630 5'GT 120499630 Upstream 4bp
chr7 16720963 16720963 1 + C G rs77834852 16720962 + 16720942 16720982 41 CATAGATGATGGTGACAAGACCAAGATGACCAACCACTGTG CATAGATGATGGTGACAAGACGAAGATGACCAACCACTGTG < 41bp 0.394284323317187 0.712336395861323 0.11945024 0.27788323 prediction 0.424672791722646 Functional Gain - BZW2 ENSG00000136261 CDS Human protein_coding chr7:16720962 chr7:16720963 synonymous SNV . 0 22 hm5C_associated_SNPs_123466 0 0 1 0 2 BZW2 chr7:16720926 3'AG 16720926 Downstream 38bp
chr7 16720963 16720963 1 + C G rs77834852 16720962 + 16720942 16720982 41 CATAGATGATGGTGACAAGACCAAGATGACCAACCACTGTG CATAGATGATGGTGACAAGACGAAGATGACCAACCACTGTG < 41bp 0.394284323317187 0.712336395861323 0.11945024 0.27788323 prediction 0.424672791722646 Functional Gain - BZW2 ENSG00000136261 CDS Human protein_coding chr7:16720962 chr7:16720963 synonymous SNV . 0 22 hm5C_associated_SNPs_123466 0 0 1 0 2 BZW2 chr7:16721029 5'GT 16721029 Upstream 67bp
chr11 2167663 2167663 1 + C A rs368536399 2167659 + 2167639 2167679 41 CACACTCGCTGGCGTCAGCCCGGCCGGCCTGGGAAGTAGGA CACACTCGCTGGCGTCAGCCCGGCAGGCCTGGGAAGTAGGA < 41bp 0.342726623001956 0.712330590675551 0.84577364 0.87409073 prediction 0.424661181351102 Functional Gain - IGF2-AS ENSG00000099869 ncRNA_exonic Human antisense chr11:2167659 chr11:2167663 . . 0 25 hm5C_associated_SNPs_123468 0 0 0 0 2 IGF2-AS chr11:2167586 3'AG 2167586 Downstream 78bp
chr11 2167663 2167663 1 + C A rs368536399 2167659 + 2167639 2167679 41 CACACTCGCTGGCGTCAGCCCGGCCGGCCTGGGAAGTAGGA CACACTCGCTGGCGTCAGCCCGGCAGGCCTGGGAAGTAGGA < 41bp 0.342726623001956 0.712330590675551 0.84577364 0.87409073 prediction 0.424661181351102 Functional Gain - IGF2-AS ENSG00000099869 ncRNA_exonic Human antisense chr11:2167659 chr11:2167663 . . 0 25 hm5C_associated_SNPs_123468 0 0 0 0 2 IGF2-AS chr11:2167757 5'GT 2167757 Upstream 95bp
chr1 201817629 201817629 1 + C A HNSC 201817625 + 201817605 201817645 41 TCAGCCATTGCCCACTGGGACTGGCCTGAAGCTTGGCCCCA TCAGCCATTGCCCACTGGGACTGGACTGAAGCTTGGCCCCA < 41bp 0.307895505406664 0.71232831746121 0.41015297 0.3383072 prediction 0.424656634922421 Functional Gain - IPO9 ENSG00000198700 CDS Human protein_coding chr1:201817625 chr1:201817629 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_123469 0 0 1 0 1 IPO9 chr1:201817722 5'GT 201817722 Upstream 94bp
chr22 37267741 37267741 1 + C T UCEC 37267740 + 37267720 37267760 41 GCGTTGACCGCATGGCAGCTCCGAGAGCAGAGGTAACCCCC GCGTTGACCGCATGGCAGCTCTGAGAGCAGAGGTAACCCCC < 41bp 0.587123733632293 0.799439917368257 0.7874211 0.4193064 prediction 0.424632367471929 Functional Gain - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37267740 chr22:37267741 nonsynonymous SNV 0.272 3 22 hm5C_associated_SNPs_123474 0 0 0 0 2 NCF4 chr22:37267694 3'AG 37267694 Downstream 48bp
chr22 37267741 37267741 1 + C T UCEC 37267740 + 37267720 37267760 41 GCGTTGACCGCATGGCAGCTCCGAGAGCAGAGGTAACCCCC GCGTTGACCGCATGGCAGCTCTGAGAGCAGAGGTAACCCCC < 41bp 0.587123733632293 0.799439917368257 0.7874211 0.4193064 prediction 0.424632367471929 Functional Gain - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37267740 chr22:37267741 nonsynonymous SNV 0.272 3 22 hm5C_associated_SNPs_123474 0 0 0 0 2 NCF4 chr22:37267751 5'GT 37267751 Upstream 11bp
chr4 31144141 31144141 1 + T C rs377149092 31144139 + 31144119 31144159 41 CCCTGACTGGGAAGTGCACTCGTGAGTGTGATGAGTATGGC CCCTGACTGGGAAGTGCACTCGCGAGTGTGATGAGTATGGC < 41bp 0.629981692113689 0.842295854235043 0.47139713 0.76080173 prediction 0.424628324242708 Functional Gain - PCDH7 ENSG00000169851 CDS Human protein_coding chr4:31144139 chr4:31144141 synonymous SNV . 0 23 hm5C_associated_SNPs_123475 0 0 1 0 1 PCDH7 chr4:31144095 3'AG 31144095 Downstream 47bp
chr1 24120731 24120731 1 + C G UCS 24120727 + 24120707 24120747 41 CCTCCAGGGCGGGGCCCTGTCCCTCTACACGGCCCTCACCT CCTCCAGGGCGGGGCCCTGTCCCTGTACACGGCCCTCACCT < 41bp 0.419595327295952 0.712311761193039 0.041405648 0.07130632 prediction 0.424623522386078 Functional Gain - LYPLA2 ENSG00000011009 CDS Human protein_coding chr1:24120727 chr1:24120731 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_123477 0 0 1 0 2 LYPLA2 chr1:24120714 3'AG 24120714 Downstream 18bp
chr1 24120731 24120731 1 + C G UCS 24120727 + 24120707 24120747 41 CCTCCAGGGCGGGGCCCTGTCCCTCTACACGGCCCTCACCT CCTCCAGGGCGGGGCCCTGTCCCTGTACACGGCCCTCACCT < 41bp 0.419595327295952 0.712311761193039 0.041405648 0.07130632 prediction 0.424623522386078 Functional Gain - LYPLA2 ENSG00000011009 CDS Human protein_coding chr1:24120727 chr1:24120731 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_123477 0 0 1 0 2 LYPLA2 chr1:24120815 5'GT 24120815 Upstream 85bp
chr19 41727810 41727810 1 + C T rs148074357 41727809 + 41727789 41727829 41 GCCTTACTTCCTGGAGGAGCCCGAAGACAGGACTGTGGCCG GCCTTACTTCCTGGAGGAGCCTGAAGACAGGACTGTGGCCG < 41bp 0.599120578428379 0.811429458548988 0.32731193 0.38920128 prediction 0.424617760241218 Functional Gain - AXL ENSG00000167601 CDS Human protein_coding chr19:41727809 chr19:41727810 synonymous SNV . 0 22 hm5C_associated_SNPs_123479 0 0 1 0 1 AXL chr19:41727785 3'AG 41727785 Downstream 26bp
chr3 50214292 50214292 1 + T C COAD 50214290 + 50214270 50214310 41 CTGGACACAGCATCGGCCCTCATCAGTGAGTGCCCCCCAAC CTGGACACAGCATCGGCCCTCACCAGTGAGTGCCCCCCAAC < 41bp 0.432493680527611 0.712300790850694 0.19110596 0.60744774 prediction 0.424601581701388 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50214290 chr3:50214292 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_123481 0 0 1 0 2 SEMA3F chr3:50214201 3'AG 50214201 Downstream 92bp
chr3 50214292 50214292 1 + T C COAD 50214290 + 50214270 50214310 41 CTGGACACAGCATCGGCCCTCATCAGTGAGTGCCCCCCAAC CTGGACACAGCATCGGCCCTCACCAGTGAGTGCCCCCCAAC < 41bp 0.432493680527611 0.712300790850694 0.19110596 0.60744774 prediction 0.424601581701388 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50214290 chr3:50214292 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_123481 0 0 1 0 2 SEMA3F chr3:50214294 5'GT 50214294 Upstream 3bp
chr16 29706013 29706013 1 + C T SKCM 29706012 + 29705992 29706032 41 GCTGCTGCTGCCGCCCGTCACCCTGGCAGCCCTGGTGGACA GCTGCTGCTGCCGCCCGTCACTCTGGCAGCCCTGGTGGACA < 41bp 0.471230047442615 0.712300033831612 0.052786887 0.066402525 prediction 0.424600067663224 Functional Gain - QPRT ENSG00000103485 CDS Human protein_coding chr16:29706012 chr16:29706013 synonymous SNV . 0 22 hm5C_associated_SNPs_123482 0 0 1 0 1 QPRT chr16:29705985 3'AG 29705985 Downstream 29bp
chr1 207639909 207639909 1 + C T UCEC 207639908 + 207639888 207639928 41 CCTCCGCCTATCCTAAATGGCCGGATTAGTTATTATTCTAC CCTCCGCCTATCCTAAATGGCTGGATTAGTTATTATTCTAC < 41bp 0.581212286854083 0.793505838117527 0.124766886 0.15053636 prediction 0.424587102526888 Functional Gain - CR2 ENSG00000117322 CDS Human protein_coding chr1:207639908 chr1:207639909 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_123484 0 0 0 0 1 CR2 chr1:207639871 3'AG 207639871 Downstream 39bp
chr20 56140420 56140420 1 + C A LUAD 56140416 + 56140396 56140436 41 TGTTTAACAGGCAAAATCATCATGCATGACCCCTTTGCCAT TGTTTAACAGGCAAAATCATCATGAATGACCCCTTTGCCAT < 41bp 0.31016559229628 0.712293542960429 0.39296472 0.3028 prediction 0.424587085920858 Functional Gain - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56140416 chr20:56140420 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_123485 0 0 1 0 1 PCK1 chr20:56140406 3'AG 56140406 Downstream 15bp
chr8 22140588 22140588 1 + T C GBM 22140585 + 22140565 22140605 41 TTCAGATGCGTCTTTATTACCACTGGGAAGAGCAGCAGGTG TTCAGATGCGTCTTTATTACCACCGGGAAGAGCAGCAGGTG < 41bp 0.520613012873575 0.732906019222167 0.22849724 0.31745428 prediction 0.424586012697184 Functional Gain - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22140585 chr8:22140588 nonsynonymous SNV 0.751 1 24 hm5C_associated_SNPs_123486 0 0 0 0 1 PIWIL2 chr8:22140547 3'AG 22140547 Downstream 42bp
chr20 2635511 2635511 1 + C A UCEC 2635510 + 2635490 2635530 41 AAAGTTAAGTTTAATGTGAACCGGGTGGACAATATGATCAT AAAGTTAAGTTTAATGTGAACAGGGTGGACAATATGATCAT < 41bp 0.622297345923978 0.83458848515992 0.44317964 0.77775073 prediction 0.424582278471883 Functional Gain - NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635510 chr20:2635511 synonymous SNV . 0 22 hm5C_associated_SNPs_123487 0 0 1 0 1 NOP56 chr20:2635593 5'GT 2635593 Upstream 83bp
chr3 49005985 49005985 1 + A G UCEC 49005982 + 49005962 49006002 41 AACAGGAGTCTCTTGCATGGCTCAGGACTGTCCACTCCGTA AACAGGAGTCTCTTGCATGGCTCGGGACTGTCCACTCCGTA < 41bp 0.58243261798461 0.794706472630313 0.04787016 0.051057577 prediction 0.424547709291405 Functional Gain - ARIH2 ENSG00000177479 CDS Human protein_coding chr3:49005982 chr3:49005985 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_123492 0 0 1 0 1 ARIH2 chr3:49005967 3'AG 49005967 Downstream 19bp
chr9 131455236 131455236 1 + C A LIHC 131455235 + 131455215 131455255 41 TGATCCATCTTCGAAGTCCACCGAAATCAAATGGAAATCTG TGATCCATCTTCGAAGTCCACAGAAATCAAATGGAAATCTG < 41bp 0.445197231576867 0.712270067477332 0.09908986 0.27562845 prediction 0.424540134954664 Functional Gain - SET ENSG00000119335 CDS Human protein_coding chr9:131455235 chr9:131455236 synonymous SNV . 0 22 hm5C_associated_SNPs_123493 0 0 1 0 2 SET chr9:131455147 3'AG 131455147 Downstream 90bp
chr9 131455236 131455236 1 + C A LIHC 131455235 + 131455215 131455255 41 TGATCCATCTTCGAAGTCCACCGAAATCAAATGGAAATCTG TGATCCATCTTCGAAGTCCACAGAAATCAAATGGAAATCTG < 41bp 0.445197231576867 0.712270067477332 0.09908986 0.27562845 prediction 0.424540134954664 Functional Gain - SET ENSG00000119335 CDS Human protein_coding chr9:131455235 chr9:131455236 synonymous SNV . 0 22 hm5C_associated_SNPs_123493 0 0 1 0 2 SET chr9:131455260 5'GT 131455260 Upstream 25bp
chr16 55705996 55705996 1 + T A LUAD 55705992 + 55705972 55706012 41 GGCCACACCTGGAACAGCCCCAACTGTACCGACCCCAAGCT GGCCACACCTGGAACAGCCCCAACAGTACCGACCCCAAGCT < 41bp 0.363051669717604 0.712268333757284 0.19224435 0.17654273 prediction 0.424536667514567 Functional Gain - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55705992 chr16:55705996 nonsynonymous SNV 0.996 5 25 hm5C_associated_SNPs_123498 0 0 0 0 1 SLC6A2 chr16:55706087 5'GT 55706087 Upstream 92bp
chr9 97321346 97321346 1 + C T SARC 97321345 + 97321325 97321365 41 GTCCAGTACAGGCTGGGTCCCCGTGGTCGCCAAGCCTCCTG GTCCAGTACAGGCTGGGTCCCTGTGGTCGCCAAGCCTCCTG < 41bp 0.539808481733576 0.752067144088269 0.6375382 0.21986768 prediction 0.424517324709386 Functional Gain - FBP2 ENSG00000130957 CDS Human protein_coding chr9:97321345 chr9:97321346 synonymous SNV . 0 22 hm5C_associated_SNPs_123501 0 0 0 0 2 FBP2 chr9:97321251 3'AG 97321251 Downstream 96bp
chr9 97321346 97321346 1 + C T SARC 97321345 + 97321325 97321365 41 GTCCAGTACAGGCTGGGTCCCCGTGGTCGCCAAGCCTCCTG GTCCAGTACAGGCTGGGTCCCTGTGGTCGCCAAGCCTCCTG < 41bp 0.539808481733576 0.752067144088269 0.6375382 0.21986768 prediction 0.424517324709386 Functional Gain - FBP2 ENSG00000130957 CDS Human antisense chr9:97321345 chr9:97321346 synonymous SNV . 0 22 hm5C_associated_SNPs_123501 0 0 0 0 2 PCAT7 chr9:97321434 5'GT 97321434 Upstream 89bp
chr15 45250649 45250649 1 + C T rs544815326 45250648 + 45250628 45250668 41 TCTCTCTGCGGTAGCTAATGCCAAAATAAAAAACTCGGTGG TCTCTCTGCGGTAGCTAATGCTAAAATAAAAAACTCGGTGG < 41bp 0.586314053624324 0.798567046754633 0.38341925 0.16659355 prediction 0.424505986260618 Functional Gain - TERB2 ENSG00000167014 CDS Human protein_coding chr15:45250648 chr15:45250649 synonymous SNV . 0 22 hm5C_associated_SNPs_123502 0 0 0 0 2 TERB2 chr15:45250571 3'AG 45250571 Downstream 79bp
chr15 45250649 45250649 1 + C T rs544815326 45250648 + 45250628 45250668 41 TCTCTCTGCGGTAGCTAATGCCAAAATAAAAAACTCGGTGG TCTCTCTGCGGTAGCTAATGCTAAAATAAAAAACTCGGTGG < 41bp 0.586314053624324 0.798567046754633 0.38341925 0.16659355 prediction 0.424505986260618 Functional Gain - TERB2 ENSG00000167014 CDS Human protein_coding chr15:45250648 chr15:45250649 synonymous SNV . 0 22 hm5C_associated_SNPs_123502 0 0 0 0 2 TERB2 chr15:45250710 5'GT 45250710 Upstream 62bp
chr21 37706008 37706008 1 + A G UCEC 37706005 + 37705985 37706025 41 CTGGCCATTCAGTGCAGTTGCTGAATTAATAGGTATGTAGT CTGGCCATTCAGTGCAGTTGCTGGATTAATAGGTATGTAGT < 41bp 0.556429994007356 0.76867757940365 0.056988418 0.25230163 prediction 0.424495170792588 Functional Gain - MORC3 ENSG00000159256 CDS Human protein_coding chr21:37706005 chr21:37706008 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_123504 0 0 1 0 2 MORC3 chr21:37705944 3'AG 37705944 Downstream 65bp
chr21 37706008 37706008 1 + A G UCEC 37706005 + 37705985 37706025 41 CTGGCCATTCAGTGCAGTTGCTGAATTAATAGGTATGTAGT CTGGCCATTCAGTGCAGTTGCTGGATTAATAGGTATGTAGT < 41bp 0.556429994007356 0.76867757940365 0.056988418 0.25230163 prediction 0.424495170792588 Functional Gain - MORC3 ENSG00000159256 CDS Human protein_coding chr21:37706005 chr21:37706008 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_123504 0 0 1 0 2 MORC3 chr21:37706016 5'GT 37706016 Upstream 9bp
chr16 70693626 70693626 1 + C T COAD 70693625 + 70693605 70693645 41 GCCCTGCTGGACAACTGCTTCCGGGTCATGGAGCTGCTGTA GCCCTGCTGGACAACTGCTTCTGGGTCATGGAGCTGCTGTA < 41bp 0.600007766424383 0.812254261009902 0.6757305 0.4136984 prediction 0.424492989171037 Functional Gain - IL34 ENSG00000157368 CDS Human protein_coding chr16:70693625 chr16:70693626 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_123505 0 0 0 0 1 IL34 chr16:70693656 5'GT 70693656 Upstream 31bp
chr9 4576583 4576583 1 + C A COAD 4576579 + 4576559 4576599 41 TATCACACAGTTCAGCAACACTGCCTGTCACCTTCCGCTGT TATCACACAGTTCAGCAACACTGCATGTCACCTTCCGCTGT < 41bp 0.282138760272442 0.712239463937724 0.15106818 0.37271684 prediction 0.424478927875448 Functional Gain - SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4576579 chr9:4576583 nonsynonymous SNV 0.751 4 25 hm5C_associated_SNPs_123507 0 0 0 0 1 SLC1A1 chr9:4576569 3'AG 4576569 Downstream 15bp
chr9 127969980 127969980 1 + A G UCEC 127969977 + 127969957 127969997 41 AAATCCAAACAGAAGCTTCTCAGACGTGCACACCATGGATC AAATCCAAACAGAAGCTTCTCAGGCGTGCACACCATGGATC < 41bp 0.460875313418221 0.712238191918561 0.8735475 0.90803665 prediction 0.424476383837121 Functional Gain - RABEPK ENSG00000136933 CDS Human protein_coding chr9:127969977 chr9:127969980 nonsynonymous SNV 0.879 4 24 hm5C_associated_SNPs_123508 0 0 1 0 1 RABEPK chr9:127970000 5'GT 127970000 Upstream 21bp
chr2 28117448 28117448 1 + C T PRAD 28117447 + 28117427 28117467 41 TCCCCAGAAGTGGCCTTGAACCGAATATCTCCAATGCTCTC TCCCCAGAAGTGGCCTTGAACTGAATATCTCCAATGCTCTC < 41bp 0.472117756176696 0.712236202634701 0.009829104 0.0036029518 prediction 0.424472405269401 Functional Gain - BABAM2 ENSG00000158019 CDS Human protein_coding chr2:28117447 chr2:28117448 stopgain 0.994 1 22 hm5C_associated_SNPs_123509 0 0 1 0 1 BABAM2 chr2:28117400 3'AG 28117400 Downstream 49bp
chr15 90969381 90969381 1 + C A LUSC 90969380 + 90969360 90969400 41 AGGGGAAGATCTGCCTCCCACCACAGAACTGGAGGAGGGGC AGGGGAAGATCTGCCTCCCACAACAGAACTGGAGGAGGGGC < 41bp 0.452561969347688 0.712235219996128 0.13178775 0.15603694 prediction 0.424470439992257 Functional Gain - IQGAP1 ENSG00000140575 CDS Human protein_coding chr15:90969380 chr15:90969381 synonymous SNV . 0 22 hm5C_associated_SNPs_123510 0 0 1 0 1 IQGAP1 chr15:90969342 3'AG 90969342 Downstream 40bp
chr19 15760901 15760901 1 + C T UCEC 15760900 + 15760880 15760920 41 GCCGTCATCCAGGAGCGGCGCCGCACCCTCCCTAGCCAGGG GCCGTCATCCAGGAGCGGCGCTGCACCCTCCCTAGCCAGGG < 41bp 0.613346467569305 0.82557945952707 0.1371631 0.17779306 prediction 0.42446598391553 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15760900 chr19:15760901 nonsynonymous SNV 0.039 1 22 hm5C_associated_SNPs_123511 0 0 1 0 1 CYP4F3 chr19:15760993 5'GT 15760993 Upstream 93bp
chr8 145096214 145096214 1 + C T SKCM 145096213 + 145096193 145096233 41 GGATCCTGTCCAGCATCTTCCCAGAGCGCGTACGGCTCTAC GGATCCTGTCCAGCATCTTCCTAGAGCGCGTACGGCTCTAC < 41bp 0.6210209368406 0.833253515595222 0.1881074 0.12575698 prediction 0.424465157509245 Functional Gain - SPATC1 ENSG00000186583 CDS Human protein_coding chr8:145096213 chr8:145096214 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_123513 0 0 0 0 1 SPATC1 chr8:145096272 5'GT 145096272 Upstream 59bp
chr14 101195353 101195353 1 + C T UCEC 101195352 + 101195332 101195372 41 TTCACGGACTCTGTGGAGAACCCGGGCAGTGCATTTGCACC TTCACGGACTCTGTGGAGAACTCGGGCAGTGCATTTGCACC < 41bp 0.610245208382456 0.822476206620738 0.75938684 0.8339316 prediction 0.424461996476563 Functional Gain - DLK1 ENSG00000185559 CDS Human protein_coding chr14:101195352 chr14:101195353 nonsynonymous SNV 0.709 4 22 hm5C_associated_SNPs_123514 0 0 1 0 2 DLK1 chr14:101195273 3'AG 101195273 Downstream 81bp
chr14 101195353 101195353 1 + C T UCEC 101195352 + 101195332 101195372 41 TTCACGGACTCTGTGGAGAACCCGGGCAGTGCATTTGCACC TTCACGGACTCTGTGGAGAACTCGGGCAGTGCATTTGCACC < 41bp 0.610245208382456 0.822476206620738 0.75938684 0.8339316 prediction 0.424461996476563 Functional Gain - DLK1 ENSG00000185559 CDS Human protein_coding chr14:101195352 chr14:101195353 nonsynonymous SNV 0.709 4 22 hm5C_associated_SNPs_123514 0 0 1 0 2 DLK1 chr14:101195403 5'GT 101195403 Upstream 51bp
chrX 99925877 99925877 1 + T C GBM 99925874 + 99925854 99925894 41 AGCAGGGTATTGACCGAGACCGCTACATGGAACCTGTCACC AGCAGGGTATTGACCGAGACCGCCACATGGAACCTGTCACC < 41bp 0.544120014956547 0.756348189721067 0.1019035 0.22124347 prediction 0.42445634952904 Functional Gain - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99925874 chrX:99925877 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_123515 0 0 0 0 1 SRPX2 chrX:99925804 3'AG 99925804 Downstream 74bp
chr1 87036798 87036798 1 + A G UCEC 87036795 + 87036775 87036815 41 CATTCCCAACTCGATGGATCCGAAGTACTGCTGCTGACTGA CATTCCCAACTCGATGGATCCGAGGTACTGCTGCTGACTGA < 41bp 0.571555111077842 0.783782752313955 0.32815117 0.80352265 prediction 0.424455282472226 Functional Gain - CLCA4 ENSG00000016602 CDS Human protein_coding chr1:87036795 chr1:87036798 synonymous SNV . 0 24 hm5C_associated_SNPs_123516 0 0 0 0 1 CLCA4 chr1:87036760 3'AG 87036760 Downstream 39bp
chr1 78001623 78001623 1 + T C COAD 78001620 + 78001600 78001640 41 AAGGAGCCGGAGCAGCCTGCCTGTGGACGACACCACCAAGA AAGGAGCCGGAGCAGCCTGCCTGCGGACGACACCACCAAGA < 41bp 0.532767360982535 0.744981770760662 0.11263725 0.20821741 prediction 0.424428819556253 Functional Gain - AK5 ENSG00000154027 CDS Human protein_coding chr1:78001620 chr1:78001623 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_123518 0 0 0 0 1 AK5 chr1:78001532 3'AG 78001532 Downstream 92bp
chr16 3188484 3188484 1 + C T COAD 3188483 + 3188463 3188503 41 ATCCCAGGCCACGGGGCCTCCCCCGACGGTGGGGGCACGGA ATCCCAGGCCACGGGGCCTCCTCCGACGGTGGGGGCACGGA < 41bp 0.578764524924146 0.790974298307963 0.17793393 0.57946366 prediction 0.424419546767634 Functional Gain - ZNF213 ENSG00000085644 CDS Human protein_coding chr16:3188483 chr16:3188484 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_123520 0 0 0 0 2 ZNF213 chr16:3188419 3'AG 3188419 Downstream 66bp
chr16 3188484 3188484 1 + C T COAD 3188483 + 3188463 3188503 41 ATCCCAGGCCACGGGGCCTCCCCCGACGGTGGGGGCACGGA ATCCCAGGCCACGGGGCCTCCTCCGACGGTGGGGGCACGGA < 41bp 0.578764524924146 0.790974298307963 0.17793393 0.57946366 prediction 0.424419546767634 Functional Gain - ZNF213 ENSG00000085644 CDS Human protein_coding chr16:3188483 chr16:3188484 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_123520 0 0 0 0 2 ZNF213 chr16:3188542 5'GT 3188542 Upstream 59bp
chr2 85824251 85824251 1 + T C rs6643 85824248 + 85824228 85824268 41 CAAATTCCTGTCCCTTGTGCCGCTATGAGCTGCCCACTGAT CAAATTCCTGTCCCTTGTGCCGCCATGAGCTGCCCACTGAT < 41bp 0.550141640097475 0.76234576472586 0.20423707 0.61352485 prediction 0.424408249256769 Functional Gain - RNF181 ENSG00000168894 CDS Human protein_coding chr2:85824248 chr2:85824251 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_123522 0 0 1 0 2 RNF181 chr2:85824227 3'AG 85824227 Downstream 25bp
chr2 85824251 85824251 1 + T C rs6643 85824248 + 85824228 85824268 41 CAAATTCCTGTCCCTTGTGCCGCTATGAGCTGCCCACTGAT CAAATTCCTGTCCCTTGTGCCGCCATGAGCTGCCCACTGAT < 41bp 0.550141640097475 0.76234576472586 0.20423707 0.61352485 prediction 0.424408249256769 Functional Gain - RNF181 ENSG00000168894 CDS Human protein_coding chr2:85824248 chr2:85824251 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_123522 0 0 1 0 2 RNF181 chr2:85824301 5'GT 85824301 Upstream 51bp
chr5 70797462 70797462 1 + A G rs199719765 70797459 + 70797439 70797479 41 GACTACAGAGAGAGAGAATCCAGAAGCTGAAACTGTATCTG GACTACAGAGAGAGAGAATCCAGGAGCTGAAACTGTATCTG < 41bp 0.491683561384934 0.712197119254381 0.82147396 0.8716235 prediction 0.424394238508763 Functional Gain - BDP1 ENSG00000145734 CDS Human protein_coding chr5:70797459 chr5:70797462 nonsynonymous SNV 0.148 0 24 hm5C_associated_SNPs_123526 0 0 1 0 2 BDP1 chr5:70797389 3'AG 70797389 Downstream 74bp
chr5 70797462 70797462 1 + A G rs199719765 70797459 + 70797439 70797479 41 GACTACAGAGAGAGAGAATCCAGAAGCTGAAACTGTATCTG GACTACAGAGAGAGAGAATCCAGGAGCTGAAACTGTATCTG < 41bp 0.491683561384934 0.712197119254381 0.82147396 0.8716235 prediction 0.424394238508763 Functional Gain - BDP1 ENSG00000145734 CDS Human protein_coding chr5:70797459 chr5:70797462 nonsynonymous SNV 0.148 0 24 hm5C_associated_SNPs_123526 0 0 1 0 2 BDP1 chr5:70797480 5'GT 70797480 Upstream 19bp
chr6 52343899 52343899 1 + T C rs1266787 52343897 + 52343877 52343917 41 TCTTACTTTCTAGCTACCGACATGATCAGTATCTTTGAGCC TCTTACTTTCTAGCTACCGACACGATCAGTATCTTTGAGCC < 41bp 0.402020184970104 0.712184840141696 0.08268413 0.026202977 prediction 0.424369680283393 Functional Gain - EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52343897 chr6:52343899 nonsynonymous SNV 0.979 0 23 hm5C_associated_SNPs_123533 4 0 1 0 1 EFHC1 chr6:52343835 3'AG 52343835 Downstream 65bp
chr3 157839954 157839954 1 + C T COAD 157839953 + 157839933 157839973 41 AGCAAGAGAAAAAAGAAACACCGTAGACGGTCCTCCTCGAG AGCAAGAGAAAAAAGAAACACTGTAGACGGTCCTCCTCGAG < 41bp 0.477011374587156 0.712182370898428 0.13712919 0.22174373 prediction 0.424364741796856 Functional Gain - RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157839953 chr3:157839954 nonsynonymous SNV 0.802 3 22 hm5C_associated_SNPs_123535 0 0 1 0 1 RSRC1 chr3:157839892 3'AG 157839892 Downstream 63bp
chr16 53301326 53301326 1 + C T UCEC 53301325 + 53301305 53301345 41 GGAGATGAAAAGCCCAAACTCCGGAGACCCTGTGACCGTTC GGAGATGAAAAGCCCAAACTCTGGAGACCCTGTGACCGTTC < 41bp 0.584652285927664 0.796832905418292 0.8049867 0.42743933 prediction 0.424361238981255 Functional Gain - CHD9 ENSG00000177200 CDS Human protein_coding chr16:53301325 chr16:53301326 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_123536 0 0 1 0 1 CHD9 chr16:53301402 5'GT 53301402 Upstream 77bp
chr22 30823179 30823179 1 + C T STAD 30823178 + 30823158 30823198 41 GTGCCCAGCCCTGAAGCAGGCCGCAGCGCCAGGGTGACTGT GTGCCCAGCCCTGAAGCAGGCTGCAGCGCCAGGGTGACTGT < 41bp 0.608298633344811 0.820466984886161 0.12448534 0.2648793 prediction 0.4243367030827 Functional Gain - MTFP1 ENSG00000242114;ENSG00000249590 CDS Human other chr22:30823178 chr22:30823179 nonsynonymous SNV 0.975 1 22 hm5C_associated_SNPs_123540 0 0 0 0 1 MTFP1 chr22:30823158 3'AG 30823158 Downstream 22bp
chr5 175793526 175793526 1 + C A UCEC 175793525 + 175793505 175793545 41 GCTGGAAGGCCACATCCCCACCTGGGGCTTCAACTCCGTGC GCTGGAAGGCCACATCCCCACATGGGGCTTCAACTCCGTGC < 41bp 0.631801875584164 0.843967440024781 0.51957893 0.8864546 prediction 0.424331128881235 Functional Gain - ARL10 ENSG00000175414 CDS Human protein_coding chr5:175793525 chr5:175793526 synonymous SNV . 0 22 hm5C_associated_SNPs_123542 0 0 0 0 1 ARL10 chr5:175793584 5'GT 175793584 Upstream 59bp
chr11 57578943 57578943 1 + C T rs144978541 57578942 + 57578922 57578962 41 AGTACTCTCCCTCTCATTGACCGGAACCAAAAATCAGGTGC AGTACTCTCCCTCTCATTGACTGGAACCAAAAATCAGGTGC < 41bp 0.60730578234041 0.819468253448658 0.26254112 0.2507996 prediction 0.424324942216495 Functional Gain - CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57578942 chr11:57578943 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_123543 0 0 1 0 2 CTNND1 chr11:57578871 3'AG 57578871 Downstream 73bp
chr11 57578943 57578943 1 + C T rs144978541 57578942 + 57578922 57578962 41 AGTACTCTCCCTCTCATTGACCGGAACCAAAAATCAGGTGC AGTACTCTCCCTCTCATTGACTGGAACCAAAAATCAGGTGC < 41bp 0.60730578234041 0.819468253448658 0.26254112 0.2507996 prediction 0.424324942216495 Functional Gain - CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57578942 chr11:57578943 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_123543 0 0 1 0 2 CTNND1 chr11:57578958 5'GT 57578958 Upstream 16bp
chr1 227174210 227174210 1 + T C rs3738725 227174207 + 227174187 227174227 41 ATCCTGGGGGAGGCCTTCGCCTCTGATGAGCCTTTTGATTT ATCCTGGGGGAGGCCTTCGCCTCCGATGAGCCTTTTGATTT < 41bp 0.523522308207784 0.735681318492074 0.06862205 0.044813573 prediction 0.424318020568578 Functional Gain - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227174207 chr1:227174210 synonymous SNV . 0 24 hm5C_associated_SNPs_123546 3 0 1 0 1 COQ8A chr1:227174154 3'AG 227174154 Downstream 57bp
chr22 35947564 35947564 1 + C T SKCM 35947563 + 35947543 35947583 41 CCTGCAGGGGATGTCTTCATCCTGGTGTTCAGCCTGGATAA CCTGCAGGGGATGTCTTCATCTTGGTGTTCAGCCTGGATAA < 41bp 0.575881648077227 0.788031094877343 0.5738616 0.40409884 prediction 0.424298893600233 Functional Gain - RASD2 ENSG00000100302 CDS Human protein_coding chr22:35947563 chr22:35947564 synonymous SNV . 0 22 hm5C_associated_SNPs_123549 0 0 0 0 1 RASD2 chr22:35947550 3'AG 35947550 Downstream 15bp
chr19 49094931 49094931 1 + C T UCEC 49094930 + 49094910 49094950 41 CTATCATTACTCCAAGATCGCCGGGCAGTTAAAGGACCCGG CTATCATTACTCCAAGATCGCTGGGCAGTTAAAGGACCCGG < 41bp 0.588088187518298 0.800227303399946 0.5318245 0.06311235 prediction 0.424278231763296 Functional Gain - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49094930 chr19:49094931 synonymous SNV . 0 22 hm5C_associated_SNPs_123552 0 0 0 0 2 SULT2B1 chr19:49094866 3'AG 49094866 Downstream 66bp
chr19 49094931 49094931 1 + C T UCEC 49094930 + 49094910 49094950 41 CTATCATTACTCCAAGATCGCCGGGCAGTTAAAGGACCCGG CTATCATTACTCCAAGATCGCTGGGCAGTTAAAGGACCCGG < 41bp 0.588088187518298 0.800227303399946 0.5318245 0.06311235 prediction 0.424278231763296 Functional Gain - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49094930 chr19:49094931 synonymous SNV . 0 22 hm5C_associated_SNPs_123552 0 0 0 0 2 SULT2B1 chr19:49094992 5'GT 49094992 Upstream 62bp
chr8 110566962 110566962 1 + A G LIHC 110566959 + 110566939 110566979 41 GTTGATCAATTAAATTTAGACAGATGTTGAAGAGTGGACTT GTTGATCAATTAAATTTAGACAGGTGTTGAAGAGTGGACTT < 41bp 0.556298245423516 0.768431192401147 0.26094738 0.38791603 prediction 0.424265893955262 Functional Gain - EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110566959 chr8:110566962 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_123556 0 0 1 2 1 EBAG9 chr8:110566958 3'AG 110566958 Downstream 5bp
chr1 1416256 1416256 1 + A G STAD 1416253 + 1416233 1416273 41 CGGCTTCTTCTCAGCAACTTCTCAATGAGGAGAATTTACGG CGGCTTCTTCTCAGCAACTTCTCGATGAGGAGAATTTACGG < 41bp 0.47171157725345 0.712131658745711 0.6446809 0.9003066 prediction 0.424263317491423 Functional Gain - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1416253 chr1:1416256 nonsynonymous SNV 0.928 3 24 hm5C_associated_SNPs_123557 0 0 0 0 2 ATAD3B chr1:1416247 3'AG 1416247 Downstream 10bp
chr1 1416256 1416256 1 + A G STAD 1416253 + 1416233 1416273 41 CGGCTTCTTCTCAGCAACTTCTCAATGAGGAGAATTTACGG CGGCTTCTTCTCAGCAACTTCTCGATGAGGAGAATTTACGG < 41bp 0.47171157725345 0.712131658745711 0.6446809 0.9003066 prediction 0.424263317491423 Functional Gain - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1416253 chr1:1416256 nonsynonymous SNV 0.928 3 24 hm5C_associated_SNPs_123557 0 0 0 0 2 ATAD3B chr1:1416316 5'GT 1416316 Upstream 61bp
chr4 15009113 15009113 1 + A G STAD 15009110 + 15009090 15009130 41 TGGTAATGTCATAGCACCACCGAAATTTACTCGCTCAACTC TGGTAATGTCATAGCACCACCGAGATTTACTCGCTCAACTC < 41bp 0.477528562875276 0.712131243714479 0.103352666 0.33629382 prediction 0.424262487428958 Functional Gain - CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15009110 chr4:15009113 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_123558 0 0 1 0 1 CPEB2 chr4:15009210 5'GT 15009210 Upstream 98bp
chr19 11141441 11141441 1 + A G GBM 11141438 + 11141418 11141458 41 CGGAGGACCGGGGCATGCTGCTGAAAACCTTCAACGAGCCC CGGAGGACCGGGGCATGCTGCTGGAAACCTTCAACGAGCCC < 41bp 0.481643039707178 0.71212099009892 0.14395046 0.09670922 prediction 0.424241980197839 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141438 chr19:11141441 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_123561 0 0 1 0 1 SMARCA4 chr19:11141406 3'AG 11141406 Downstream 36bp
chr1 162535877 162535877 1 + A G LUAD 162535874 + 162535854 162535894 41 GCATTATGAACATTAATGACCTCAAACTCACGTTGTCCAAA GCATTATGAACATTAATGACCTCGAACTCACGTTGTCCAAA < 41bp 0.56999005289604 0.78210585067982 0.025919467 0.08580354 prediction 0.424231595567559 Functional Gain - UAP1 ENSG00000117143 CDS Human protein_coding chr1:162535874 chr1:162535877 nonsynonymous SNV 0.982 0 24 hm5C_associated_SNPs_123563 0 0 1 0 1 UAP1 chr1:162535802 3'AG 162535802 Downstream 76bp
chr18 21096361 21096361 1 + C T STAD 21096360 + 21096340 21096380 41 GTCAACTAAACCCAGCCTTTCCGAAAGAGACATCGCAATGG GTCAACTAAACCCAGCCTTTCTGAAAGAGACATCGCAATGG < 41bp 0.446678099735439 0.712115408457994 0.043598026 0.06399384 prediction 0.424230816915987 Functional Gain - C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21096360 chr18:21096361 synonymous SNV . 0 22 hm5C_associated_SNPs_123564 0 0 1 0 2 C18orf8 chr18:21096284 3'AG 21096284 Downstream 78bp
chr18 21096361 21096361 1 + C T STAD 21096360 + 21096340 21096380 41 GTCAACTAAACCCAGCCTTTCCGAAAGAGACATCGCAATGG GTCAACTAAACCCAGCCTTTCTGAAAGAGACATCGCAATGG < 41bp 0.446678099735439 0.712115408457994 0.043598026 0.06399384 prediction 0.424230816915987 Functional Gain - C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21096360 chr18:21096361 synonymous SNV . 0 22 hm5C_associated_SNPs_123564 0 0 1 0 2 C18orf8 chr18:21096387 5'GT 21096387 Upstream 27bp
chr19 13888898 13888898 1 + A G COAD 13888895 + 13888875 13888915 41 GTCGGAATCCGGAAGAAGATCGAACATGACGTGGTGATGAA GTCGGAATCCGGAAGAAGATCGAGCATGACGTGGTGATGAA < 41bp 0.589644019527478 0.801753364637197 0.26210564 0.79794127 prediction 0.424218690219438 Functional Gain - C19orf53 ENSG00000104979 CDS Human protein_coding chr19:13888895 chr19:13888898 synonymous SNV . 0 24 hm5C_associated_SNPs_123568 0 0 1 0 1 C19orf53 chr19:13888866 3'AG 13888866 Downstream 33bp
chr22 45128232 45128232 1 + T C rs8141631 45128230 + 45128210 45128250 41 CGCTGGCCCGGGCCCATGCCCGTGTGCCCCCTGCCATCGTG CGCTGGCCCGGGCCCATGCCCGCGTGCCCCCTGCCATCGTG < 41bp 0.61530117674839 0.82740073111081 0.29144093 0.5241666 prediction 0.424199108724841 Functional Gain - PRR5 ENSG00000186654;ENSG00000241484;ENSG00000248405 CDS Human other chr22:45128230 chr22:45128232 synonymous SNV . 0 23 hm5C_associated_SNPs_123572 0 0 1 0 1 PRR5 chr22:45128271 5'GT 45128271 Upstream 40bp
chr1 2494649 2494649 1 + C G SKCM 2494645 + 2494625 2494665 41 TGAGGCCCTGCAGGCCCCTCCGGACGTCACCACGGTGGCCG TGAGGCCCTGCAGGCCCCTCCGGAGGTCACCACGGTGGCCG < 41bp 0.625856257212756 0.837952296284997 0.76765335 0.8751987 prediction 0.424192078144482 Functional Gain - TNFRSF14 ENSG00000157873 CDS Human protein_coding chr1:2494645 chr1:2494649 nonsynonymous SNV 0.015 3 25 hm5C_associated_SNPs_123574 0 0 0 0 1 TNFRSF14 chr1:2494587 3'AG 2494587 Downstream 63bp
chr10 7788613 7788613 1 + C A STAD 7788612 + 7788592 7788632 41 ATGAGAGACCAGGAAAGGACCCTGAGAAGCCAGAGGCCAGC ATGAGAGACCAGGAAAGGACCATGAGAAGCCAGAGGCCAGC < 41bp 0.441693985276345 0.712095933342771 0.04217571 0.11812374 prediction 0.424191866685542 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7788612 chr10:7788613 nonsynonymous SNV 0.724 4 22 hm5C_associated_SNPs_123575 0 0 1 0 2 ITIH2 chr10:7788556 3'AG 7788556 Downstream 58bp
chr10 7788613 7788613 1 + C A STAD 7788612 + 7788592 7788632 41 ATGAGAGACCAGGAAAGGACCCTGAGAAGCCAGAGGCCAGC ATGAGAGACCAGGAAAGGACCATGAGAAGCCAGAGGCCAGC < 41bp 0.441693985276345 0.712095933342771 0.04217571 0.11812374 prediction 0.424191866685542 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7788612 chr10:7788613 nonsynonymous SNV 0.724 4 22 hm5C_associated_SNPs_123575 0 0 1 0 2 ITIH2 chr10:7788667 5'GT 7788667 Upstream 55bp
chr19 4442934 4442934 1 + C T CHOL 4442933 + 4442913 4442953 41 GCCCTGCAGAGGTCCAAGCCCCGTGTGGAGCCGCTTCCGGA GCCCTGCAGAGGTCCAAGCCCTGTGTGGAGCCGCTTCCGGA < 41bp 0.487273811948374 0.712086216418231 0.37283343 0.38067287 prediction 0.424172432836462 Functional Gain - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442933 chr19:4442934 nonsynonymous SNV 0.036 2 22 hm5C_associated_SNPs_123580 0 0 1 0 1 CHAF1A chr19:4442922 3'AG 4442922 Downstream 13bp
chr9 137005029 137005029 1 + C T UCEC 137005028 + 137005008 137005048 41 GGAGGAGAAGAAGCCCGAGACCGAGGCCGCCAGAGCACAGC GGAGGAGAAGAAGCCCGAGACTGAGGCCGCCAGAGCACAGC < 41bp 0.593743024634767 0.805826811622647 0.39910513 0.28448668 prediction 0.42416757397576 Functional Gain - WDR5 ENSG00000196363 CDS Human protein_coding chr9:137005028 chr9:137005029 synonymous SNV . 0 22 hm5C_associated_SNPs_123583 0 0 1 0 2 WDR5 chr9:137004942 3'AG 137004942 Downstream 88bp
chr9 137005029 137005029 1 + C T UCEC 137005028 + 137005008 137005048 41 GGAGGAGAAGAAGCCCGAGACCGAGGCCGCCAGAGCACAGC GGAGGAGAAGAAGCCCGAGACTGAGGCCGCCAGAGCACAGC < 41bp 0.593743024634767 0.805826811622647 0.39910513 0.28448668 prediction 0.42416757397576 Functional Gain - WDR5 ENSG00000196363 CDS Human protein_coding chr9:137005028 chr9:137005029 synonymous SNV . 0 22 hm5C_associated_SNPs_123583 0 0 1 0 2 WDR5 chr9:137005080 5'GT 137005080 Upstream 52bp
chr7 31018774 31018774 1 + C T SKCM 31018773 + 31018753 31018793 41 GGAAGTGGCATGGCCATGACCCTGAGCTTCTGCCAGCCTGG GGAAGTGGCATGGCCATGACCTTGAGCTTCTGCCAGCCTGG < 41bp 0.575784433241555 0.787865117103295 0.34098396 0.29982984 prediction 0.424161367723481 Functional Gain - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31018773 chr7:31018774 nonsynonymous SNV 0.996 0 22 hm5C_associated_SNPs_123586 0 0 0 0 1 GHRHR chr7:31018734 3'AG 31018734 Downstream 41bp
chr16 69942710 69942710 1 + C T STAD 69942709 + 69942689 69942729 41 GGACGTGTCTATTATGTTGACCACAATACCAAGACCACCAC GGACGTGTCTATTATGTTGACTACAATACCAAGACCACCAC < 41bp 0.438134305077796 0.712075757718921 0.047740698 0.42967355 prediction 0.424151515437842 Functional Gain - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69942709 chr16:69942710 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_123589 0 0 0 0 1 WWP2 chr16:69942664 3'AG 69942664 Downstream 47bp
chr20 61450599 61450599 1 + C G rs143307835 61450598 + 61450578 61450618 41 CAAAGGGGGCCCCAGGAAAGCCGGGGAAACCAGGAGAGGCT CAAAGGGGGCCCCAGGAAAGCGGGGGAAACCAGGAGAGGCT < 41bp 0.678714515291529 0.890785846536152 0.90951794 0.91861975 prediction 0.424142662489245 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450598 chr20:61450599 nonsynonymous SNV 0.971 2 22 hm5C_associated_SNPs_123591 0 0 1 0 2 COL9A3 chr20:61450574 3'AG 61450574 Downstream 26bp
chr20 61450599 61450599 1 + C G rs143307835 61450598 + 61450578 61450618 41 CAAAGGGGGCCCCAGGAAAGCCGGGGAAACCAGGAGAGGCT CAAAGGGGGCCCCAGGAAAGCGGGGGAAACCAGGAGAGGCT < 41bp 0.678714515291529 0.890785846536152 0.90951794 0.91861975 prediction 0.424142662489245 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450598 chr20:61450599 nonsynonymous SNV 0.971 2 22 hm5C_associated_SNPs_123591 0 0 1 0 2 COL9A3 chr20:61450645 5'GT 61450645 Upstream 47bp
chr14 94582193 94582193 1 + T C LUSC 94582190 + 94582170 94582210 41 GGCGGGAATCGCCTCGTCCTCCATAGCAGCCAAGATGATGT GGCGGGAATCGCCTCGTCCTCCACAGCAGCCAAGATGATGT < 41bp 0.508601276737699 0.720672470155463 0.21750176 0.13329399 prediction 0.424142386835527 Functional Gain - IFI27 ENSG00000165949 CDS Human protein_coding chr14:94582190 chr14:94582193 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_123592 0 0 0 0 1 IFI27 chr14:94582127 3'AG 94582127 Downstream 67bp
chr19 17895003 17895003 1 + C T SKCM 17895002 + 17894982 17895022 41 CAGCGCCAGGCAGAGCAGAACCCCACTGCCTCCTACTACAA CAGCGCCAGGCAGAGCAGAACTCCACTGCCTCCTACTACAA < 41bp 0.419954271201972 0.712066117698357 0.32255703 0.9311363 prediction 0.424132235396714 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17895002 chr19:17895003 nonsynonymous SNV 0.899 4 22 hm5C_associated_SNPs_123594 0 0 0 0 2 FCHO1 chr19:17894912 3'AG 17894912 Downstream 92bp
chr19 17895003 17895003 1 + C T SKCM 17895002 + 17894982 17895022 41 CAGCGCCAGGCAGAGCAGAACCCCACTGCCTCCTACTACAA CAGCGCCAGGCAGAGCAGAACTCCACTGCCTCCTACTACAA < 41bp 0.419954271201972 0.712066117698357 0.32255703 0.9311363 prediction 0.424132235396714 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17895002 chr19:17895003 nonsynonymous SNV 0.899 4 22 hm5C_associated_SNPs_123594 0 0 0 0 2 FCHO1 chr19:17895044 5'GT 17895044 Upstream 42bp
chr10 12136106 12136106 1 + T C UCEC 12136103 + 12136083 12136123 41 GGCTGTGCCATCATCCATGTCAATGGAGACAGCCCAGAGGA GGCTGTGCCATCATCCATGTCAACGGAGACAGCCCAGAGGA < 41bp 0.518385992367812 0.730450470156881 0.2008054 0.2079564 prediction 0.424128955578138 Functional Gain - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12136103 chr10:12136106 synonymous SNV . 0 24 hm5C_associated_SNPs_123596 0 0 1 0 1 DHTKD1 chr10:12136072 3'AG 12136072 Downstream 35bp
chr2 24964987 24964987 1 + T C COAD 24964985 + 24964965 24965005 41 AGCAGAGGCATGACAGGAAACATAGGAGGACAGTTTGGCAC AGCAGAGGCATGACAGGAAACACAGGAGGACAGTTTGGCAC < 41bp 0.434509526495716 0.712064378631256 0.47008857 0.25448895 prediction 0.424128757262512 Functional Gain - NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24964985 chr2:24964987 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_123597 0 0 1 0 1 NCOA1 chr2:24965055 5'GT 24965055 Upstream 69bp
chr15 90610410 90610410 1 + T C COAD 90610408 + 90610388 90610428 41 TCAGGGACACAGACGGACGCCGTGGTGGTGCTGTCCTTGGC TCAGGGACACAGACGGACGCCGCGGTGGTGCTGTCCTTGGC < 41bp 0.61915441673212 0.831218597279619 0.7863848 0.552821 prediction 0.424128361094999 Functional Gain - ZNF710 ENSG00000140548 CDS Human protein_coding chr15:90610408 chr15:90610410 nonsynonymous SNV 0.970 1 23 hm5C_associated_SNPs_123598 0 0 0 0 1 ZNF710 chr15:90610342 3'AG 90610342 Downstream 69bp
chr3 132036382 132036382 1 + C T SKCM 132036381 + 132036361 132036401 41 CTGCTTTTTTTCTGGCTAGACCGAAGTGTACTAGCCAAGGA CTGCTTTTTTTCTGGCTAGACTGAAGTGTACTAGCCAAGGA < 41bp 0.554790833032636 0.766854623104056 0.21225545 0.12778667 prediction 0.424127580142842 Functional Gain - ACPP ENSG00000014257 CDS Human protein_coding chr3:132036381 chr3:132036382 stopgain 0.009 0 22 hm5C_associated_SNPs_123599 0 0 0 0 1 ACPP chr3:132036420 5'GT 132036420 Upstream 39bp
chr7 18767370 18767370 1 + C G UCEC 18767366 + 18767346 18767386 41 AATGGACCGCCCCCTCCAGCCTGGCTCTGCAACTGGTAGGA AATGGACCGCCCCCTCCAGCCTGGGTCTGCAACTGGTAGGA < 41bp 0.470580615832536 0.71205821597561 0.15512764 0.57198143 prediction 0.424116431951221 Functional Gain - HDAC9 ENSG00000048052 CDS Human protein_coding chr7:18767366 chr7:18767370 synonymous SNV . 0 25 hm5C_associated_SNPs_123601 0 0 0 0 1 HDAC9 chr7:18767380 5'GT 18767380 Upstream 11bp
chr19 10753986 10753986 1 + C G rs151043533 10753982 + 10753962 10754002 41 CCTGGAGAGGAATGACGGCTCGGCCGAGAGGCCTTACTTCA CCTGGAGAGGAATGACGGCTCGGCGGAGAGGCCTTACTTCA < 41bp 0.65475284563969 0.866800991101461 0.27807856 0.81618726 prediction 0.424096290923542 Functional Gain - SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10753982 chr19:10753986 synonymous SNV . 0 25 hm5C_associated_SNPs_123605 0 0 0 1 1 SLC44A2 chr19:10753955 3'AG 10753955 Downstream 32bp
chr1 107691370 107691370 1 + C A LUAD 107691366 + 107691346 107691386 41 TTTGGGATTACATGGCCTGCCAGCCGGAATCCACGGACATG TTTGGGATTACATGGCCTGCCAGCAGGAATCCACGGACATG < 41bp 0.31827562211063 0.712034705623915 0.13928089 0.230834 prediction 0.42406941124783 Functional Gain - NTNG1 ENSG00000162631 CDS Human protein_coding chr1:107691366 chr1:107691370 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_123609 0 0 0 0 1 NTNG1 chr1:107691461 5'GT 107691461 Upstream 92bp
chr10 124189150 124189150 1 + C T SKCM 124189149 + 124189129 124189169 41 CCTTTTTGCAGGAGCATCCCCCCGGTCCTTCAGAATCCAAA CCTTTTTGCAGGAGCATCCCCTCGGTCCTTCAGAATCCAAA < 41bp 0.582641967180271 0.794670376257376 0.28488058 0.2336477 prediction 0.42405681815421 Functional Gain - PLEKHA1 ENSG00000107679 CDS Human protein_coding chr10:124189149 chr10:124189150 nonsynonymous SNV 0.164 0 22 hm5C_associated_SNPs_123614 0 0 1 0 1 PLEKHA1 chr10:124189140 3'AG 124189140 Downstream 11bp
chr19 17309096 17309096 1 + C T rs193007687 17309095 + 17309075 17309115 41 TCCCAGACGCAGGGCTGTCCCCGGGCTCTCAGGTCGACTCT TCCCAGACGCAGGGCTGTCCCTGGGCTCTCAGGTCGACTCT < 41bp 0.587716905620307 0.799743896990218 0.91723037 0.39952338 prediction 0.424053982739821 Functional Gain - MYO9B ENSG00000099331 CDS Human protein_coding chr19:17309095 chr19:17309096 nonsynonymous SNV 0.216 3 22 hm5C_associated_SNPs_123615 0 0 1 0 1 MYO9B chr19:17309117 5'GT 17309117 Upstream 22bp
chr10 71665573 71665573 1 + C T BRCA 71665572 + 71665552 71665592 41 GGGATCCAGGGCTACCACGGCCGGAAGGTAAGATGGAGGGG GGGATCCAGGGCTACCACGGCTGGAAGGTAAGATGGAGGGG < 41bp 0.47497387536638 0.712025677638052 0.72861606 0.71446455 prediction 0.424051355276105 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71665572 chr10:71665573 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_123616 0 0 0 0 2 COL13A1 chr10:71665543 3'AG 71665543 Downstream 31bp
chr10 71665573 71665573 1 + C T BRCA 71665572 + 71665552 71665592 41 GGGATCCAGGGCTACCACGGCCGGAAGGTAAGATGGAGGGG GGGATCCAGGGCTACCACGGCTGGAAGGTAAGATGGAGGGG < 41bp 0.47497387536638 0.712025677638052 0.72861606 0.71446455 prediction 0.424051355276105 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71665572 chr10:71665573 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_123616 0 0 0 0 2 COL13A1 chr10:71665578 5'GT 71665578 Upstream 6bp
chr2 27745372 27745372 1 + C T rs146053779 27745371 + 27745351 27745391 41 CGATGCATCGAGAGCCTCCTCCGAGCGATCCACTTTCCCCA CGATGCATCGAGAGCCTCCTCTGAGCGATCCACTTTCCCCA < 41bp 0.592184555496809 0.804207636699553 0.7694992 0.16606626 prediction 0.424046162405488 Functional Gain - GCKR ENSG00000084734 CDS Human protein_coding chr2:27745371 chr2:27745372 stopgain 0.083 0 22 hm5C_associated_SNPs_123617 0 0 0 0 2 GCKR chr2:27745327 3'AG 27745327 Downstream 46bp
chr2 27745372 27745372 1 + C T rs146053779 27745371 + 27745351 27745391 41 CGATGCATCGAGAGCCTCCTCCGAGCGATCCACTTTCCCCA CGATGCATCGAGAGCCTCCTCTGAGCGATCCACTTTCCCCA < 41bp 0.592184555496809 0.804207636699553 0.7694992 0.16606626 prediction 0.424046162405488 Functional Gain - GCKR ENSG00000084734 CDS Human protein_coding chr2:27745371 chr2:27745372 stopgain 0.083 0 22 hm5C_associated_SNPs_123617 0 0 0 0 2 GCKR chr2:27745461 5'GT 27745461 Upstream 90bp
chr14 99182700 99182700 1 + C A LUAD 99182699 + 99182679 99182719 41 AGACATAACAAGCAGCATGCCCTGACGCTCACCAAGGCCAG AGACATAACAAGCAGCATGCCATGACGCTCACCAAGGCCAG < 41bp 0.445478061695795 0.712023032624057 0.044064343 0.07081276 prediction 0.424046065248113 Functional Gain - C14orf177 ENSG00000176605 CDS Human protein_coding chr14:99182699 chr14:99182700 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_123618 0 0 0 0 1 C14orf177 chr14:99182727 5'GT 99182727 Upstream 28bp
chr11 63743765 63743765 1 + C G KIRP 63743761 + 63743741 63743781 41 GCCAGCGGGCTGGATCCTGTCACACCTGGAGACCTACAGGA GCCAGCGGGCTGGATCCTGTCACAGCTGGAGACCTACAGGA < 41bp 0.648820474208491 0.860841222771472 0.25327498 0.3675502 prediction 0.424041497125962 Functional Gain - COX8A ENSG00000176340 CDS Human protein_coding chr11:63743761 chr11:63743765 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_123619 0 0 1 0 1 COX8A chr11:63743697 3'AG 63743697 Downstream 69bp
chr1 207263668 207263668 1 + A G UCEC 207263665 + 207263645 207263685 41 TCTTCCAGCAGAGCACTGTCCAGAGCTTCCTCCAGTGGACA TCTTCCAGCAGAGCACTGTCCAGGGCTTCCTCCAGTGGACA < 41bp 0.584008171110824 0.79601925401146 0.6366769 0.9138642 prediction 0.424022165801272 Functional Gain - C4BPB ENSG00000123843 CDS Human protein_coding chr1:207263665 chr1:207263668 nonsynonymous SNV 0.523 1 24 hm5C_associated_SNPs_123622 0 0 1 0 2 C4BPB chr1:207263653 3'AG 207263653 Downstream 16bp
chr1 207263668 207263668 1 + A G UCEC 207263665 + 207263645 207263685 41 TCTTCCAGCAGAGCACTGTCCAGAGCTTCCTCCAGTGGACA TCTTCCAGCAGAGCACTGTCCAGGGCTTCCTCCAGTGGACA < 41bp 0.584008171110824 0.79601925401146 0.6366769 0.9138642 prediction 0.424022165801272 Functional Gain - C4BPB ENSG00000123843 CDS Human protein_coding chr1:207263665 chr1:207263668 nonsynonymous SNV 0.523 1 24 hm5C_associated_SNPs_123622 0 0 1 0 2 C4BPB chr1:207263656 3'AG 207263656 Downstream 13bp
chr10 72462080 72462080 1 + C T SKCM 72462079 + 72462059 72462099 41 CTGGTTCAGGCGGGCCTCATCCGCACAGACAGCACCGACTT CTGGTTCAGGCGGGCCTCATCTGCACAGACAGCACCGACTT < 41bp 0.622036219172334 0.834046879249067 0.0953491 0.15277505 prediction 0.424021320153466 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72462079 chr10:72462080 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_123623 0 0 0 0 1 ADAMTS14 chr10:72462068 3'AG 72462068 Downstream 13bp
chr7 141420826 141420826 1 + C T HNSC 141420825 + 141420805 141420845 41 TCCTCATGGGCAGAAGATGACCACATGATCATTCAGAATGA TCCTCATGGGCAGAAGATGACTACATGATCATTCAGAATGA < 41bp 0.446339073118346 0.712006933826913 0.059482098 0.6510873 prediction 0.424013867653827 Functional Gain - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141420825 chr7:141420826 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_123625 0 0 0 0 2 WEE2 chr7:141420735 3'AG 141420735 Downstream 92bp
chr7 141420826 141420826 1 + C T HNSC 141420825 + 141420805 141420845 41 TCCTCATGGGCAGAAGATGACCACATGATCATTCAGAATGA TCCTCATGGGCAGAAGATGACTACATGATCATTCAGAATGA < 41bp 0.446339073118346 0.712006933826913 0.059482098 0.6510873 prediction 0.424013867653827 Functional Gain - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141420825 chr7:141420826 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_123625 0 0 0 0 2 WEE2 chr7:141420856 5'GT 141420856 Upstream 31bp
chr17 16335314 16335314 1 + C A LIHC 16335313 + 16335293 16335333 41 GAGCCAGGAGGCTTGGCGCCCCGAAGCTCCTACAGGCCCCA GAGCCAGGAGGCTTGGCGCCCAGAAGCTCCTACAGGCCCCA < 41bp 0.624158841335647 0.83616374143679 0.5201863 0.8118416 prediction 0.424009800202287 Functional Gain - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16335313 chr17:16335314 synonymous SNV . 0 22 hm5C_associated_SNPs_123626 0 0 1 0 1 TRPV2 chr17:16335280 3'AG 16335280 Downstream 35bp
chr1 100606022 100606022 1 + T G rs532713466 100606020 + 100606000 100606040 41 ATCCAGCATTACACGATGCACTTAATGACCCTAAAAATGGC ATCCAGCATTACACGATGCACTGAATGACCCTAAAAATGGC < 41bp 0.387440619951638 0.71200449246834 0.05362168 0.028886735 prediction 0.424008984936679 Functional Gain - TRMT13 ENSG00000122435 CDS Human protein_coding chr1:100606020 chr1:100606022 synonymous SNV . 0 23 hm5C_associated_SNPs_123627 0 0 1 0 3 TRMT13 chr1:100605964 3'AG 100605964 Downstream 59bp
chr1 100606022 100606022 1 + T G rs532713466 100606020 + 100606000 100606040 41 ATCCAGCATTACACGATGCACTTAATGACCCTAAAAATGGC ATCCAGCATTACACGATGCACTGAATGACCCTAAAAATGGC < 41bp 0.387440619951638 0.71200449246834 0.05362168 0.028886735 prediction 0.424008984936679 Functional Gain - TRMT13 ENSG00000122435 CDS Human protein_coding chr1:100606020 chr1:100606022 synonymous SNV . 0 23 hm5C_associated_SNPs_123627 0 0 1 0 3 TRMT13 chr1:100606006 3'AG 100606006 Downstream 17bp
chr1 100606022 100606022 1 + T G rs532713466 100606020 + 100606000 100606040 41 ATCCAGCATTACACGATGCACTTAATGACCCTAAAAATGGC ATCCAGCATTACACGATGCACTGAATGACCCTAAAAATGGC < 41bp 0.387440619951638 0.71200449246834 0.05362168 0.028886735 prediction 0.424008984936679 Functional Gain - TRMT13 ENSG00000122435 CDS Human protein_coding chr1:100606020 chr1:100606022 synonymous SNV . 0 23 hm5C_associated_SNPs_123627 0 0 1 0 3 TRMT13 chr1:100606070 5'GT 100606070 Upstream 49bp
chr14 24113663 24113663 1 + A G BRCA 24113660 + 24113640 24113680 41 GCAAGACAGCGCTGCTGGGTCTCACTAGAACACTGGCATTG GCAAGACAGCGCTGCTGGGTCTCGCTAGAACACTGGCATTG < 41bp 0.462177251741736 0.712003940571484 0.021115422 0.052726835 prediction 0.424007881142968 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113660 chr14:24113663 nonsynonymous SNV 0.053 1 24 hm5C_associated_SNPs_123628 0 0 1 3 2 DHRS2 chr14:24113618 3'AG 24113618 Downstream 46bp
chr14 24113663 24113663 1 + A G BRCA 24113660 + 24113640 24113680 41 GCAAGACAGCGCTGCTGGGTCTCACTAGAACACTGGCATTG GCAAGACAGCGCTGCTGGGTCTCGCTAGAACACTGGCATTG < 41bp 0.462177251741736 0.712003940571484 0.021115422 0.052726835 prediction 0.424007881142968 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113660 chr14:24113663 nonsynonymous SNV 0.053 1 24 hm5C_associated_SNPs_123628 0 0 1 3 2 DHRS2 chr14:24113752 5'GT 24113752 Upstream 90bp
chr1 10510294 10510294 1 + C A STAD 10510293 + 10510273 10510313 41 CCCACAAGATGCCATTGTCCCCCGGCCTCCTGCTGCTGCTG CCCACAAGATGCCATTGTCCCACGGCCTCCTGCTGCTGCTG < 41bp 0.613678317694946 0.825680270169235 0.7898451 0.8134131 prediction 0.424003904948578 Functional Gain - CORT ENSG00000241563 CDS Human protein_coding chr1:10510293 chr1:10510294 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_123630 0 0 0 0 1 CORT chr1:10510379 5'GT 10510379 Upstream 86bp
chr10 71025440 71025440 1 + C T rs143547587 71025439 + 71025419 71025459 41 GGTGAAGGAGGTGTGCGGAGCCGTGTCCCGGCGGGCGGCCC GGTGAAGGAGGTGTGCGGAGCTGTGTCCCGGCGGGCGGCCC < 41bp 0.471523599813529 0.712001379808179 0.39893386 0.34249938 prediction 0.424002759616358 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71025439 chr10:71025440 synonymous SNV . 0 22 hm5C_associated_SNPs_123632 0 0 0 0 1 HKDC1 chr10:71025341 3'AG 71025341 Downstream 100bp
chr17 33588113 33588113 1 + C T STAD 33588112 + 33588092 33588132 41 AGCAGCAGAAACGCTACTTTCCAGGTAATTGGCCATCTCTG AGCAGCAGAAACGCTACTTTCTAGGTAATTGGCCATCTCTG < 41bp 0.473487362294854 0.712001040844189 0.9056864 0.8463917 prediction 0.424002081688379 Functional Gain - SLFN5 ENSG00000166750 CDS Human protein_coding chr17:33588112 chr17:33588113 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_123633 0 0 0 0 1 SLFN5 chr17:33588115 5'GT 33588115 Upstream 3bp
chr16 314618 314618 1 + C T UCEC 314617 + 314597 314637 41 CTGGTTCTCGCTCCAGGAGACCGGGGAGGCCCGGCACAGCC CTGGTTCTCGCTCCAGGAGACTGGGGAGGCCCGGCACAGCC < 41bp 0.570357874605045 0.782349691732462 0.90981996 0.905257 prediction 0.423983634254835 Functional Gain - FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:314617 chr16:314618 synonymous SNV . 0 22 hm5C_associated_SNPs_123638 0 0 0 0 2 FAM234A chr16:314613 3'AG 314613 Downstream 6bp
chr16 314618 314618 1 + C T UCEC 314617 + 314597 314637 41 CTGGTTCTCGCTCCAGGAGACCGGGGAGGCCCGGCACAGCC CTGGTTCTCGCTCCAGGAGACTGGGGAGGCCCGGCACAGCC < 41bp 0.570357874605045 0.782349691732462 0.90981996 0.905257 prediction 0.423983634254835 Functional Gain - FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:314617 chr16:314618 synonymous SNV . 0 22 hm5C_associated_SNPs_123638 0 0 0 0 2 FAM234A chr16:314715 5'GT 314715 Upstream 98bp
chrX 150828215 150828215 1 + T G LUAD 150828212 + 150828192 150828232 41 TTGATATTGCAGAGGTTGAGCAGTATGGACCACAAGAAAAC TTGATATTGCAGAGGTTGAGCAGGATGGACCACAAGAAAAC < 41bp 0.31612812613992 0.711991337501813 0.32273707 0.4722796 prediction 0.423982675003626 Functional Gain - PASD1 ENSG00000166049 CDS Human protein_coding chrX:150828212 chrX:150828215 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_123639 0 0 0 0 2 PASD1 chrX:150828185 3'AG 150828185 Downstream 31bp
chrX 150828215 150828215 1 + T G LUAD 150828212 + 150828192 150828232 41 TTGATATTGCAGAGGTTGAGCAGTATGGACCACAAGAAAAC TTGATATTGCAGAGGTTGAGCAGGATGGACCACAAGAAAAC < 41bp 0.31612812613992 0.711991337501813 0.32273707 0.4722796 prediction 0.423982675003626 Functional Gain - PASD1 ENSG00000166049 CDS Human protein_coding chrX:150828212 chrX:150828215 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_123639 0 0 0 0 2 PASD1 chrX:150828308 5'GT 150828308 Upstream 94bp
chr10 124909094 124909094 1 + A G PAAD 124909091 + 124909071 124909111 41 GTTCTCGCTCCTCAGGTACCCCCAAGGGCAGCGGAGGCTCG GTTCTCGCTCCTCAGGTACCCCCGAGGGCAGCGGAGGCTCG < 41bp 0.588375261201769 0.800365735592878 0.7049079 0.44847235 prediction 0.423980948782219 Functional Gain - HMX2 ENSG00000188816 CDS Human protein_coding chr10:124909091 chr10:124909094 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_123640 0 0 0 0 1 HMX2 chr10:124909086 3'AG 124909086 Downstream 9bp
chr10 127429604 127429604 1 + C G rs17153494 127429603 + 127429583 127429623 41 CCTCTGCACCAATATGCTTTCCGAAGTGCTGTTGTTTCTCT CCTCTGCACCAATATGCTTTCGGAAGTGCTGTTGTTTCTCT < 41bp 0.387022203716664 0.711982000961004 0.2604441 0.82302856 prediction 0.423964001922009 Functional Gain - EDRF1 ENSG00000107938 CDS Human protein_coding chr10:127429603 chr10:127429604 synonymous SNV . 0 22 hm5C_associated_SNPs_123644 0 0 1 0 1 EDRF1 chr10:127429570 3'AG 127429570 Downstream 35bp
chr20 33762595 33762595 1 + T C UCEC 33762593 + 33762573 33762613 41 AACGCGTCGCTGGGGGGACACCTAACGCACGTGCTGGAAGG AACGCGTCGCTGGGGGGACACCCAACGCACGTGCTGGAAGG < 41bp 0.429640181256451 0.711972452965474 0.7813136 0.7780851 prediction 0.423944905930948 Functional Gain - PROCR ENSG00000101000 CDS Human protein_coding chr20:33762593 chr20:33762595 nonsynonymous SNV 0.251 1 23 hm5C_associated_SNPs_123649 0 0 0 0 1 PROCR chr20:33762505 3'AG 33762505 Downstream 91bp
chr22 20378905 20378905 1 + C T rs2930761 20378904 + 20378884 20378924 41 AGCTCTTCTACGGAGGGGAACCGCAGAGCCAGAAGAGCACG AGCTCTTCTACGGAGGGGAACTGCAGAGCCAGAAGAGCACG < 41bp 0.598407983399114 0.810380036379128 0.38442263 0.65187 prediction 0.423944105960029 Functional Gain - TMEM191B ENSG00000206176 ncRNA_exonic Human other chr22:20378904 chr22:20378905 . 0.016 0 22 hm5C_associated_SNPs_123650 0 0 1 1 2 TMEM191B chr22:20378886 3'AG 20378886 Downstream 20bp
chr22 20378905 20378905 1 + C T rs2930761 20378904 + 20378884 20378924 41 AGCTCTTCTACGGAGGGGAACCGCAGAGCCAGAAGAGCACG AGCTCTTCTACGGAGGGGAACTGCAGAGCCAGAAGAGCACG < 41bp 0.598407983399114 0.810380036379128 0.38442263 0.65187 prediction 0.423944105960029 Functional Gain - TMEM191B ENSG00000206176 ncRNA_exonic Human other chr22:20378904 chr22:20378905 . 0.016 0 22 hm5C_associated_SNPs_123650 0 0 1 1 2 TMEM191B chr22:20378960 5'GT 20378960 Upstream 56bp
chr19 22256289 22256289 1 + C A LUSC 22256288 + 22256268 22256308 41 CAGGTATTGCTGTCTCTAAGCCAGACCTGATCACCTGTCTG CAGGTATTGCTGTCTCTAAGCAAGACCTGATCACCTGTCTG < 41bp 0.454294259074333 0.711963343987934 0.5253954 0.3844236 prediction 0.423926687975868 Functional Gain - ZNF257 ENSG00000197134 CDS Human protein_coding chr19:22256288 chr19:22256289 nonsynonymous SNV 0.192 0 22 hm5C_associated_SNPs_123653 0 0 0 0 2 ZNF257 chr19:22256271 3'AG 22256271 Downstream 19bp
chr19 22256289 22256289 1 + C A LUSC 22256288 + 22256268 22256308 41 CAGGTATTGCTGTCTCTAAGCCAGACCTGATCACCTGTCTG CAGGTATTGCTGTCTCTAAGCAAGACCTGATCACCTGTCTG < 41bp 0.454294259074333 0.711963343987934 0.5253954 0.3844236 prediction 0.423926687975868 Functional Gain - ZNF257 ENSG00000197134 CDS Human protein_coding chr19:22256288 chr19:22256289 nonsynonymous SNV 0.192 0 22 hm5C_associated_SNPs_123653 0 0 0 0 2 ZNF257 chr19:22256366 5'GT 22256366 Upstream 78bp
chr6 7862556 7862556 1 + C T rs61733611 7862555 + 7862535 7862575 41 AGTCCACGTCCACCCCCGAGCCGCAGGCCTGGTGGGCAGAG AGTCCACGTCCACCCCCGAGCTGCAGGCCTGGTGGGCAGAG < 41bp 0.631269134938557 0.843228796261607 0.13039818 0.065322995 prediction 0.423919322646101 Functional Gain - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7862555 chr6:7862556 synonymous SNV . 0 22 hm5C_associated_SNPs_123655 0 0 0 0 1 BMP6 chr6:7862534 3'AG 7862534 Downstream 23bp
chr20 61453160 61453160 1 + C A LUAD 61453159 + 61453139 61453179 41 GGGATCGGCCTCCGCGGCCCCCCGGTGAGTGGCTGTCCCAG GGGATCGGCCTCCGCGGCCCCACGGTGAGTGGCTGTCCCAG < 41bp 0.61527244616839 0.827228777126998 0.35355788 0.6482753 prediction 0.423912661917217 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61453159 chr20:61453160 nonsynonymous SNV 0.979 1 22 hm5C_associated_SNPs_123658 0 0 1 0 2 COL9A3 chr20:61453109 3'AG 61453109 Downstream 52bp
chr20 61453160 61453160 1 + C A LUAD 61453159 + 61453139 61453179 41 GGGATCGGCCTCCGCGGCCCCCCGGTGAGTGGCTGTCCCAG GGGATCGGCCTCCGCGGCCCCACGGTGAGTGGCTGTCCCAG < 41bp 0.61527244616839 0.827228777126998 0.35355788 0.6482753 prediction 0.423912661917217 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61453159 chr20:61453160 nonsynonymous SNV 0.979 1 22 hm5C_associated_SNPs_123658 0 0 1 0 2 COL9A3 chr20:61453162 5'GT 61453162 Upstream 3bp
chr19 19646389 19646389 1 + C T HNSC 19646388 + 19646368 19646408 41 GTGGTGGATGCCGTACTGGGCCCCGGCGTGGAGCCGGGCGA GTGGTGGATGCCGTACTGGGCTCCGGCGTGGAGCCGGGCGA < 41bp 0.595190856016017 0.807131663725465 0.6418558 0.7759277 prediction 0.423881615418896 Functional Gain - YJEFN3 ENSG00000250067;ENSG00000258674 CDS Human other chr19:19646388 chr19:19646389 nonsynonymous SNV 0.102 1 22 hm5C_associated_SNPs_123661 0 0 1 0 1 YJEFN3 chr19:19646338 3'AG 19646338 Downstream 52bp
chr6 131894445 131894445 1 + T C PAAD 131894443 + 131894423 131894463 41 ATGAGCGCCAAGTCCAGAACCATAGGGATTATTGGAGCTCC ATGAGCGCCAAGTCCAGAACCACAGGGATTATTGGAGCTCC < 41bp 0.461653327897264 0.711939780582675 0.6584611 0.74522734 prediction 0.423879561165349 Functional Gain - ARG1 ENSG00000118520 CDS Human protein_coding chr6:131894443 chr6:131894445 nonsynonymous SNV 0.007 1 23 hm5C_associated_SNPs_123662 0 0 0 0 1 ARG1 chr6:131894479 5'GT 131894479 Upstream 35bp
chr19 5137991 5137991 1 + T C UCEC 5137988 + 5137968 5138008 41 CCCAGGTGGATCCACGTGATCTGTGCCATCGCAGTCCCCGA CCCAGGTGGATCCACGTGATCTGCGCCATCGCAGTCCCCGA < 41bp 0.509154972322459 0.721094525801501 0.14345896 0.1177299 prediction 0.423879106958083 Functional Gain - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5137988 chr19:5137991 synonymous SNV . 0 24 hm5C_associated_SNPs_123663 0 0 1 0 2 KDM4B chr19:5137973 3'AG 5137973 Downstream 19bp
chr19 5137991 5137991 1 + T C UCEC 5137988 + 5137968 5138008 41 CCCAGGTGGATCCACGTGATCTGTGCCATCGCAGTCCCCGA CCCAGGTGGATCCACGTGATCTGCGCCATCGCAGTCCCCGA < 41bp 0.509154972322459 0.721094525801501 0.14345896 0.1177299 prediction 0.423879106958083 Functional Gain - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5137988 chr19:5137991 synonymous SNV . 0 24 hm5C_associated_SNPs_123663 0 0 1 0 2 KDM4B chr19:5138081 5'GT 5138081 Upstream 91bp
chr20 49184935 49184935 1 + T C UCEC 49184933 + 49184913 49184953 41 GCAGGGCCCTTTGCCTAACACATGCGGTCACTTTTGGGAGA GCAGGGCCCTTTGCCTAACACACGCGGTCACTTTTGGGAGA < 41bp 0.426607239112409 0.711937792058079 0.3823028 0.3715278 prediction 0.423875584116159 Functional Gain - PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49184933 chr20:49184935 nonsynonymous SNV 0.523 5 23 hm5C_associated_SNPs_123665 0 0 1 0 2 PTPN1 chr20:49184917 3'AG 49184917 Downstream 19bp
chr20 49184935 49184935 1 + T C UCEC 49184933 + 49184913 49184953 41 GCAGGGCCCTTTGCCTAACACATGCGGTCACTTTTGGGAGA GCAGGGCCCTTTGCCTAACACACGCGGTCACTTTTGGGAGA < 41bp 0.426607239112409 0.711937792058079 0.3823028 0.3715278 prediction 0.423875584116159 Functional Gain - PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49184933 chr20:49184935 nonsynonymous SNV 0.523 5 23 hm5C_associated_SNPs_123665 0 0 1 0 2 PTPN1 chr20:49185015 5'GT 49185015 Upstream 81bp
chr19 52447413 52447413 1 + A G rs8106409 52447410 + 52447390 52447430 41 ATCATCTACAGATGCACTCACAAAAGCAAAGATGTCTGAAG ATCATCTACAGATGCACTCACAAGAGCAAAGATGTCTGAAG < 41bp 0.567820222914741 0.779755602176665 0.19730127 0.36844045 prediction 0.423870758523847 Functional Gain - ZNF613 ENSG00000176024 CDS Human protein_coding chr19:52447410 chr19:52447413 nonsynonymous SNV 0.019 1 24 hm5C_associated_SNPs_123666 0 0 0 0 1 ZNF613 chr19:52447372 3'AG 52447372 Downstream 42bp
chr10 43606842 43606842 1 + T C LUAD 43606840 + 43606820 43606860 41 AAGTGTGCCGAACTTCACTACATGGTGGTGGCCACCGACCA AAGTGTGCCGAACTTCACTACACGGTGGTGGCCACCGACCA < 41bp 0.432271096926324 0.711931706070041 0.46075594 0.3660081 prediction 0.423863412140082 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43606840 chr10:43606842 nonsynonymous SNV 0.019 0 23 hm5C_associated_SNPs_123667 0 0 0 0 1 RET chr10:43606913 5'GT 43606913 Upstream 72bp
chr1 192335114 192335114 1 + T A LUSC 192335110 + 192335090 192335130 41 AATATTGCTGAACCAACACTCAAATGCTTTGATGAGGCTCA AATATTGCTGAACCAACACTCAAAAGCTTTGATGAGGCTCA < 41bp 0.413118423501249 0.71193013061593 0.3120137 0.4212406 prediction 0.423860261231859 Functional Gain - RGS21 ENSG00000253148 CDS Human protein_coding chr1:192335110 chr1:192335114 nonsynonymous SNV 0.979 0 25 hm5C_associated_SNPs_123670 0 0 0 0 1 RGS21 chr1:192335051 3'AG 192335051 Downstream 64bp
chr17 47656029 47656029 1 + C T SKCM 47656028 + 47656008 47656048 41 TGATGACCACGAGGGCCAGCCCCGGCCCCGGGTGCCTCGGA TGATGACCACGAGGGCCAGCCTCGGCCCCGGGTGCCTCGGA < 41bp 0.596795990338598 0.808715747514881 0.82928026 0.80002624 prediction 0.423839514352564 Functional Gain - NXPH3 ENSG00000182575 CDS Human protein_coding chr17:47656028 chr17:47656029 synonymous SNV . 0 22 hm5C_associated_SNPs_123674 0 0 0 0 1 NXPH3 chr17:47655958 3'AG 47655958 Downstream 72bp
chr3 183823994 183823994 1 + T G BRCA 183823992 + 183823972 183824012 41 TTCATCACCCACCTGCTGCACGTGGCCACCACCCAGCCCCC TTCATCACCCACCTGCTGCACGGGGCCACCACCCAGCCCCC < 41bp 0.715173722008129 0.927092178587751 0.21688446 0.9261287 prediction 0.423836913159243 Functional Gain - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183823992 chr3:183823994 nonsynonymous SNV 0.889 1 23 hm5C_associated_SNPs_123676 0 0 0 0 1 HTR3E chr3:183823916 3'AG 183823916 Downstream 79bp
chr21 18919449 18919449 1 + C A UCEC 18919448 + 18919428 18919468 41 TTTACGCTTAGTCCCGAAGACCAGGGACCGCTGGACATCGA TTTACGCTTAGTCCCGAAGACAAGGGACCGCTGGACATCGA < 41bp 0.621873605418338 0.833791282874401 0.4235271 0.2914173 prediction 0.423835354912127 Functional Gain - CXADR ENSG00000154639 CDS Human protein_coding chr21:18919448 chr21:18919449 nonsynonymous SNV 0.958 0 22 hm5C_associated_SNPs_123677 0 0 1 0 1 CXADR chr21:18919511 5'GT 18919511 Upstream 63bp
chr10 134884576 134884576 1 + C A LUAD 134884575 + 134884555 134884595 41 ACCAGACAGCCGGGGCCCAACCGCTGGGGGCCACACCCGGG ACCAGACAGCCGGGGCCCAACAGCTGGGGGCCACACCCGGG < 41bp 0.469417014163923 0.711914477075425 0.3221867 0.31281042 prediction 0.423828954150849 Functional Gain - LINC01168;ADGRA1-AS1 ENSG00000197177 CDS Human protein_coding chr10:134884575 chr10:134884576 synonymous SNV . 0 22 hm5C_associated_SNPs_123681 0 0 0 0 1 LINC01168;ADGRA1-AS1 chr10:134884654 5'GT 134884654 Upstream 79bp
chr10 99416657 99416657 1 + C A UCEC 99416656 + 99416636 99416676 41 GTTTTGAAGCAGAACCTCTTCCTGAGAACACTAACCGGCAA GTTTTGAAGCAGAACCTCTTCATGAGAACACTAACCGGCAA < 41bp 0.626559287015785 0.838466837851295 0.18494052 0.30816036 prediction 0.423815101671021 Functional Gain - PI4K2A ENSG00000155252;ENSG00000249967 CDS Human other chr10:99416656 chr10:99416657 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_123683 0 0 1 0 2 PI4K2A chr10:99416578 3'AG 99416578 Downstream 80bp
chr10 99416657 99416657 1 + C A UCEC 99416656 + 99416636 99416676 41 GTTTTGAAGCAGAACCTCTTCCTGAGAACACTAACCGGCAA GTTTTGAAGCAGAACCTCTTCATGAGAACACTAACCGGCAA < 41bp 0.626559287015785 0.838466837851295 0.18494052 0.30816036 prediction 0.423815101671021 Functional Gain - PI4K2A ENSG00000155252;ENSG00000249967 CDS Human other chr10:99416656 chr10:99416657 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_123683 0 0 1 0 2 PI4K2A chr10:99416731 5'GT 99416731 Upstream 75bp
chr19 36256066 36256066 1 + C T SKCM 36256065 + 36256045 36256085 41 ACTCCAGCAAGGGCCTTGGCCCCAGGGCACCCGGTAAGGGC ACTCCAGCAAGGGCCTTGGCCTCAGGGCACCCGGTAAGGGC < 41bp 0.454414638805192 0.711906466855584 0.21504518 0.051136672 prediction 0.423812933711169 Functional Gain - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36256065 chr19:36256066 nonsynonymous SNV 0.063 0 22 hm5C_associated_SNPs_123684 0 0 1 0 1 PROSER3 chr19:36256077 5'GT 36256077 Upstream 12bp
chr17 21202211 21202211 1 + C T STAD 21202210 + 21202190 21202230 41 ACCCCCCCGGAACCTGGACTCCCGGACCTTCATCACCATTG ACCCCCCCGGAACCTGGACTCTCGGACCTTCATCACCATTG < 41bp 0.612575815136392 0.824481037336538 0.6835695 0.57539934 prediction 0.423810444400293 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21202210 chr17:21202211 synonymous SNV . 0 22 hm5C_associated_SNPs_123685 0 0 1 0 1 MAP2K3 chr17:21202190 3'AG 21202190 Downstream 22bp
chr2 197583296 197583296 1 + A G COAD 197583293 + 197583273 197583313 41 TGAAGTGTCGTAATGCGGCCCTGAAAGAGAGTCAGAAGTTG TGAAGTGTCGTAATGCGGCCCTGGAAGAGAGTCAGAAGTTG < 41bp 0.473428605461147 0.711903831506135 0.009140402 0.02968812 prediction 0.423807663012269 Functional Gain - CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197583293 chr2:197583296 nonsynonymous SNV 0.794 1 24 hm5C_associated_SNPs_123686 0 0 0 0 1 CCDC150 chr2:197583227 3'AG 197583227 Downstream 70bp
chr15 69682037 69682037 1 + A G COAD 69682034 + 69682014 69682054 41 CATACACGTTCCCGGATGCGCTCATGTGCACCACTTTCCAT CATACACGTTCCCGGATGCGCTCGTGTGCACCACTTTCCAT < 41bp 0.46083600169573 0.711902586373225 0.1113089 0.15173772 prediction 0.42380517274645 Functional Gain - PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69682034 chr15:69682037 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_123687 0 0 1 0 2 PAQR5 chr15:69681993 3'AG 69681993 Downstream 45bp
chr15 69682037 69682037 1 + A G COAD 69682034 + 69682014 69682054 41 CATACACGTTCCCGGATGCGCTCATGTGCACCACTTTCCAT CATACACGTTCCCGGATGCGCTCGTGTGCACCACTTTCCAT < 41bp 0.46083600169573 0.711902586373225 0.1113089 0.15173772 prediction 0.42380517274645 Functional Gain - PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69682034 chr15:69682037 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_123687 0 0 1 0 2 PAQR5 chr15:69682119 5'GT 69682119 Upstream 83bp
chr19 57908438 57908438 1 + T C UCEC 57908436 + 57908416 57908456 41 GGCCGTGTGGTCTTTGAGGACGTGGCCATATATTTCTCCCA GGCCGTGTGGTCTTTGAGGACGCGGCCATATATTTCTCCCA < 41bp 0.610245650494497 0.822143764616872 0.06622204 0.08320624 prediction 0.42379622824475 Functional Gain - ZNF548 ENSG00000188785;ENSG00000269533 CDS Human other chr19:57908436 chr19:57908438 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_123688 0 0 0 0 1 ZNF548 chr19:57908416 3'AG 57908416 Downstream 23bp
chr5 169533456 169533456 1 + C G SKCM 169533455 + 169533435 169533475 41 CTTCTACAACAAGAGCAAGGCCGGCTGGCAGAACTCCATCC CTTCTACAACAAGAGCAAGGCGGGCTGGCAGAACTCCATCC < 41bp 0.388086845191756 0.711894766284818 0.33583885 0.4693268 prediction 0.423789532569635 Functional Gain - FOXI1 ENSG00000168269 CDS Human protein_coding chr5:169533455 chr5:169533456 synonymous SNV . 0 22 hm5C_associated_SNPs_123690 0 0 0 0 1 FOXI1 chr5:169533535 5'GT 169533535 Upstream 80bp
chr5 76707942 76707942 1 + A G LUSC 76707939 + 76707919 76707959 41 GCTCAGATGTGCACCAGAGTCACAGTCACCTTGCAATGCCA GCTCAGATGTGCACCAGAGTCACGGTCACCTTGCAATGCCA < 41bp 0.572518408756209 0.784403793478671 0.22160122 0.35536575 prediction 0.423770769444925 Functional Gain - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76707939 chr5:76707942 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_123694 0 0 0 0 1 PDE8B chr5:76707925 3'AG 76707925 Downstream 18bp
chr16 24922664 24922664 1 + A G OV 24922661 + 24922641 24922681 41 CTTTCTAGGTGACATGACCCCAAAGCAGTCCAAAGTGGTGA CTTTCTAGGTGACATGACCCCAAGGCAGTCCAAAGTGGTGA < 41bp 0.469060776137799 0.711884943958295 0.035520226 0.10573357 prediction 0.42376988791659 Functional Gain - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24922661 chr16:24922664 nonsynonymous SNV 0.401 0 24 hm5C_associated_SNPs_123695 0 0 0 0 1 SLC5A11 chr16:24922649 3'AG 24922649 Downstream 16bp
chr19 33666372 33666372 1 + T C STAD 33666370 + 33666350 33666390 41 TCTGAAATGTTCACCCAATGCGTGTTCTGCCGGATAGATAC TCTGAAATGTTCACCCAATGCGCGTTCTGCCGGATAGATAC < 41bp 0.444534554280043 0.711883244703186 0.24568641 0.18981081 prediction 0.423766489406372 Functional Gain - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33666370 chr19:33666372 nonsynonymous SNV 0.701 2 23 hm5C_associated_SNPs_123696 0 0 0 0 1 WDR88 chr19:33666302 3'AG 33666302 Downstream 71bp
chr1 119929384 119929384 1 + T C UCEC 119929381 + 119929361 119929401 41 AAAAGAGGATGCAGAGTTAGCTGTGAAGCACAATGTCCAGG AAAAGAGGATGCAGAGTTAGCTGCGAAGCACAATGTCCAGG < 41bp 0.507705438940299 0.719584176608053 0.1843783 0.22184405 prediction 0.423757475335508 Functional Gain - HAO2 ENSG00000116882 CDS Human protein_coding chr1:119929381 chr1:119929384 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_123697 0 0 0 0 1 HAO2 chr1:119929454 5'GT 119929454 Upstream 71bp
chr11 119169173 119169173 1 + C G PRAD 119169169 + 119169149 119169189 41 AGCCACCTGTGCCGGCCGTGCTGGCCCGCCGAACTCTCTCA AGCCACCTGTGCCGGCCGTGCTGGGCCGCCGAACTCTCTCA < 41bp 0.408922176918468 0.711875694349445 0.21615669 0.4983511 prediction 0.42375138869889 Functional Gain - CBL ENSG00000110395 CDS Human protein_coding chr11:119169169 chr11:119169173 nonsynonymous SNV 0.932 3 25 hm5C_associated_SNPs_123699 0 0 0 0 1 CBL chr11:119169250 5'GT 119169250 Upstream 78bp
chr7 141896589 141896589 1 + C T SKCM 141896588 + 141896568 141896608 41 GGGGGCATTTTATCCATTTTCCAGAAACCACAACAACATCG GGGGGCATTTTATCCATTTTCTAGAAACCACAACAACATCG < 41bp 0.486981174127508 0.711862746270691 0.32861847 0.20543963 prediction 0.423725492541383 Functional Gain - MGAM2 ENSG00000257743 CDS Human protein_coding chr7:141896588 chr7:141896589 synonymous SNV . 0 22 hm5C_associated_SNPs_123703 0 0 0 0 1 MGAM2 chr7:141896500 3'AG 141896500 Downstream 90bp
chr10 99509340 99509340 1 + C A GBM 99509339 + 99509319 99509359 41 CTGGGGAATGTGGAGTTCTTCCGAGGTAAGCCCTGAAGGGC CTGGGGAATGTGGAGTTCTTCAGAGGTAAGCCCTGAAGGGC < 41bp 0.621857805690139 0.833718062444453 0.9298134 0.9434972 prediction 0.423720513508629 Functional Gain - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99509339 chr10:99509340 synonymous SNV . 0 22 hm5C_associated_SNPs_123705 0 0 1 1 1 ZFYVE27 chr10:99509343 5'GT 99509343 Upstream 4bp
chr16 56904030 56904030 1 + C T LUAD 56904029 + 56904009 56904049 41 TGGCACCTACTTCCTCATCTCCCGGAGTCTGGGCCCAGAGC TGGCACCTACTTCCTCATCTCTCGGAGTCTGGGCCCAGAGC < 41bp 0.449078818075879 0.711859297357148 0.6747266 0.55100524 prediction 0.423718594714296 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56904029 chr16:56904030 synonymous SNV . 0 22 hm5C_associated_SNPs_123706 0 0 0 0 1 SLC12A3 chr16:56904008 3'AG 56904008 Downstream 23bp
chr16 31391181 31391181 1 + C A rs560912339 31391180 + 31391160 31391200 41 TGGATGTGGAGGTCTCCCACCCCCAGGTACCCAAGGACTGC TGGATGTGGAGGTCTCCCACCACCAGGTACCCAAGGACTGC < 41bp 0.451761592005503 0.711857161060021 0.09553522 0.15641814 prediction 0.423714322120043 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31391180 chr16:31391181 nonsynonymous SNV 0.019 3 22 hm5C_associated_SNPs_123707 0 0 0 0 1 ITGAX chr16:31391185 5'GT 31391185 Upstream 5bp
chr7 100197676 100197676 1 + T C UCEC 100197674 + 100197654 100197694 41 GTTTGTTACCTGCAGCGGCCCATCACCCTGTGGTGCGGCCT GTTTGTTACCTGCAGCGGCCCACCACCCTGTGGTGCGGCCT < 41bp 0.430483763315521 0.711854210141013 0.02318737 0.027341723 prediction 0.423708420282026 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100197674 chr7:100197676 nonsynonymous SNV 0.556 1 23 hm5C_associated_SNPs_123709 0 0 0 0 1 FBXO24 chr7:100197654 3'AG 100197654 Downstream 23bp
chr10 95372878 95372878 1 + A G LUSC 95372875 + 95372855 95372895 41 GACAACCTGGTGGGCCCTGACAAAGAAGTTGTGTTTCCATT GACAACCTGGTGGGCCCTGACAAGGAAGTTGTGTTTCCATT < 41bp 0.593880899917383 0.805732649314961 0.36921942 0.7195594 prediction 0.423703498795157 Functional Gain - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95372875 chr10:95372878 synonymous SNV . 0 24 hm5C_associated_SNPs_123710 0 0 0 0 1 PDE6C chr10:95372962 5'GT 95372962 Upstream 85bp
chr16 2120463 2120463 1 + C A PRAD 2120459 + 2120439 2120479 41 TGCGTCCTCTCTCTGCAGACCAAGCTGTACACCCTGCCTGC TGCGTCCTCTCTCTGCAGACCAAGATGTACACCCTGCCTGC < 41bp 0.31459898260522 0.711842562391173 0.2020559 0.5860314 prediction 0.423685124782347 Functional Gain - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2120459 chr16:2120463 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_123713 0 0 1 0 1 TSC2 chr16:2120457 3'AG 2120457 Downstream 7bp
chr7 48086170 48086170 1 + T C UCEC 48086167 + 48086147 48086187 41 CTTCGACTTCGACATGAAAACAGTTTGGCAAAGAGAGGCTG CTTCGACTTCGACATGAAAACAGCTTGGCAAAGAGAGGCTG < 41bp 0.512270535393448 0.724111456154526 0.19293007 0.21602565 prediction 0.423681841522156 Functional Gain - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48086167 chr7:48086170 nonsynonymous SNV 0.984 0 24 hm5C_associated_SNPs_123714 0 0 0 0 1 C7orf57 chr7:48086213 5'GT 48086213 Upstream 44bp
chr2 86677036 86677036 1 + A G STAD 86677033 + 86677013 86677053 41 AGAACATAATTTGGTTTTAGCTGAACGAAAGTCACCTGAAA AGAACATAATTTGGTTTTAGCTGGACGAAAGTCACCTGAAA < 41bp 0.475375446280213 0.711834598900605 0.2034924 0.49857384 prediction 0.423669197801211 Functional Gain - KDM3A ENSG00000115548 CDS Human protein_coding chr2:86677033 chr2:86677036 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_123716 0 0 1 0 1 KDM3A chr2:86677085 5'GT 86677085 Upstream 50bp
chr4 4419022 4419022 1 + C A LUSC 4419021 + 4419001 4419041 41 GCGGAGCAAGACTCCAGTGCCCGGGAGAAATTTTACACAGT GCGGAGCAAGACTCCAGTGCCAGGGAGAAATTTTACACAGT < 41bp 0.450380675844633 0.711834282474919 0.5127233 0.9241466 prediction 0.423668564949838 Functional Gain - NSG1 ENSG00000168824 CDS Human protein_coding chr4:4419021 chr4:4419022 synonymous SNV . 0 22 hm5C_associated_SNPs_123717 0 0 0 0 1 NSG1 chr4:4418962 3'AG 4418962 Downstream 61bp
chr19 53005160 53005160 1 + A G ESCA 53005157 + 53005137 53005177 41 GGAGCCAGGCATGGCTCTTCCTCAGGTGAAGTGATATTCCT GGAGCCAGGCATGGCTCTTCCTCGGGTGAAGTGATATTCCT < 41bp 0.58340507268733 0.795237397063658 0.11677989 0.23867929 prediction 0.423664648752657 Functional Gain - ZNF578 ENSG00000258405 CDS Human protein_coding chr19:53005157 chr19:53005160 nonsynonymous SNV 0.062 0 24 hm5C_associated_SNPs_123718 0 0 0 0 2 ZNF578 chr19:53005080 3'AG 53005080 Downstream 81bp
chr19 53005160 53005160 1 + A G ESCA 53005157 + 53005137 53005177 41 GGAGCCAGGCATGGCTCTTCCTCAGGTGAAGTGATATTCCT GGAGCCAGGCATGGCTCTTCCTCGGGTGAAGTGATATTCCT < 41bp 0.58340507268733 0.795237397063658 0.11677989 0.23867929 prediction 0.423664648752657 Functional Gain - ZNF578 ENSG00000258405 CDS Human protein_coding chr19:53005157 chr19:53005160 nonsynonymous SNV 0.062 0 24 hm5C_associated_SNPs_123718 0 0 0 0 2 ZNF578 chr19:53005161 5'GT 53005161 Upstream 2bp
chr1 53320240 53320240 1 + C T COAD 53320239 + 53320219 53320259 41 CTGATGGAACACTGTGCCTTCCGGAGCATTGGAGTTTCCCT CTGATGGAACACTGTGCCTTCTGGAGCATTGGAGTTTCCCT < 41bp 0.613370032519626 0.825196383854314 0.8698753 0.17472681 prediction 0.423652702669376 Functional Gain - ZYG11A ENSG00000203995 CDS Human protein_coding chr1:53320239 chr1:53320240 nonsynonymous SNV 0.967 0 22 hm5C_associated_SNPs_123720 0 0 1 0 1 ZYG11A chr1:53320302 5'GT 53320302 Upstream 63bp
chr1 159272183 159272183 1 + T C BLCA 159272180 + 159272160 159272200 41 TCCTGCCATGGAATCCCCTACTCTACTGTGTGTAGCCTTAC TCCTGCCATGGAATCCCCTACTCCACTGTGTGTAGCCTTAC < 41bp 0.498377884108163 0.711821091494501 0.38019708 0.907 prediction 0.423642182989001 Functional Gain - FCER1A ENSG00000179639 CDS Human protein_coding chr1:159272180 chr1:159272183 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_123722 0 0 0 0 2 FCER1A chr1:159272096 3'AG 159272096 Downstream 88bp
chr1 159272183 159272183 1 + T C BLCA 159272180 + 159272160 159272200 41 TCCTGCCATGGAATCCCCTACTCTACTGTGTGTAGCCTTAC TCCTGCCATGGAATCCCCTACTCCACTGTGTGTAGCCTTAC < 41bp 0.498377884108163 0.711821091494501 0.38019708 0.907 prediction 0.423642182989001 Functional Gain - FCER1A ENSG00000179639 CDS Human protein_coding chr1:159272180 chr1:159272183 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_123722 0 0 0 0 2 FCER1A chr1:159272209 5'GT 159272209 Upstream 27bp
chr3 135969390 135969390 1 + A G LIHC 135969387 + 135969367 135969407 41 GGGCCAACGCCGTATTGACGCGCAGCACAAGCGAGTGAGTC GGGCCAACGCCGTATTGACGCGCGGCACAAGCGAGTGAGTC < 41bp 0.593473729753065 0.805292547265183 0.15448233 0.46356174 prediction 0.423637635024236 Functional Gain - PCCB ENSG00000114054 CDS Human protein_coding chr3:135969387 chr3:135969390 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_123723 0 0 1 0 1 PCCB chr3:135969400 5'GT 135969400 Upstream 11bp
chr3 50677820 50677820 1 + C A COAD 50677819 + 50677799 50677839 41 CCTGTATGACAGCCCCAAGGCCCGGCAGGAGGTAGACCATC CCTGTATGACAGCCCCAAGGCACGGCAGGAGGTAGACCATC < 41bp 0.44518710757934 0.711816988254224 0.08930561 0.08693376 prediction 0.423633976508448 Functional Gain - MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50677819 chr3:50677820 synonymous SNV . 0 22 hm5C_associated_SNPs_123725 0 0 1 0 1 MAPKAPK3 chr3:50677797 3'AG 50677797 Downstream 24bp
chr8 28908612 28908612 1 + C A STAD 28908608 + 28908588 28908628 41 AATGGCAGCAGTCAACCACACTATCTTGGCATTGGCCCGAC AATGGCAGCAGTCAACCACACTATATTGGCATTGGCCCGAC < 41bp 0.306558332974733 0.711816977711471 0.07168898 0.44625083 prediction 0.423633955422943 Functional Gain - HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28908608 chr8:28908612 synonymous SNV . 0 25 hm5C_associated_SNPs_123726 0 0 1 0 1 HMBOX1 chr8:28908535 3'AG 28908535 Downstream 78bp
chr7 129950817 129950817 1 + C T rs73148705 129950816 + 129950796 129950836 41 AGTCAAAAAGGCCCCAGATGCCGAGGAACTCGTGAGTCACA AGTCAAAAAGGCCCCAGATGCTGAGGAACTCGTGAGTCACA < 41bp 0.584181636843346 0.795996255817467 0.83766687 0.47711653 prediction 0.423629237948242 Functional Gain - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950816 chr7:129950817 synonymous SNV . 0 22 hm5C_associated_SNPs_123728 0 0 0 0 1 CPA4 chr7:129950826 5'GT 129950826 Upstream 10bp
chr11 120686122 120686122 1 + C A UCEC 120686121 + 120686101 120686141 41 CCCAAGGGGGTGGTCGCTGTCCTCGGACCATCGTCCAGCCC CCCAAGGGGGTGGTCGCTGTCATCGGACCATCGTCCAGCCC < 41bp 0.462763046193239 0.711813238800454 0.6313698 0.8804709 prediction 0.423626477600908 Functional Gain - GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120686121 chr11:120686122 nonsynonymous SNV 0.983 1 22 hm5C_associated_SNPs_123729 0 0 0 0 1 GRIK4 chr11:120686184 5'GT 120686184 Upstream 63bp
chr11 76253279 76253279 1 + C T HNSC 76253278 + 76253258 76253298 41 AGTCAGCCATCGCTCCCAGCCCCAACAGCCTTCCCAGCCCC AGTCAGCCATCGCTCCCAGCCTCAACAGCCTTCCCAGCCCC < 41bp 0.436857683530175 0.711807184777687 0.14551839 0.43356007 prediction 0.423614369555375 Functional Gain - EMSY ENSG00000158636 CDS Human protein_coding chr11:76253278 chr11:76253279 synonymous SNV . 0 22 hm5C_associated_SNPs_123731 0 0 0 0 1 EMSY chr11:76253212 3'AG 76253212 Downstream 68bp
chr14 67850106 67850106 1 + A G rs76855584 67850103 + 67850083 67850123 41 AGGCTTGAAAGAGAAAATGCCGAAGTGGATGGAGATGATGA AGGCTTGAAAGAGAAAATGCCGAGGTGGATGGAGATGATGA < 41bp 0.531561414112324 0.743366664163201 0.17708242 0.67559934 prediction 0.423610500101753 Functional Gain - EIF2S1 ENSG00000134001 CDS Human protein_coding chr14:67850103 chr14:67850106 synonymous SNV . 0 24 hm5C_associated_SNPs_123733 0 0 1 0 1 EIF2S1 chr14:67850032 3'AG 67850032 Downstream 75bp
chr20 34043033 34043033 1 + C G rs189502737 34043029 + 34043009 34043049 41 GCAGCTCAATCGCGGAGCAACTAGCCGGGCGTCTGCGGGAG GCAGCTCAATCGCGGAGCAACTAGGCGGGCGTCTGCGGGAG < 41bp 0.423817507627379 0.711802454745314 0.123621315 0.3593849 prediction 0.423604909490628 Functional Gain - CEP250;GDF5 ENSG00000126001 UTR5 Human protein_coding chr20:34043029 chr20:34043033 . . 0 25 hm5C_associated_SNPs_123735 0 0 1 0 1 CEP250;GDF5 chr20:34043063 5'GT 34043063 Upstream 31bp
chr17 26824119 26824119 1 + C T UCEC 26824118 + 26824098 26824138 41 TGGACTCTCCTCACACCAGGCCCGGGCAGGATTCCTCCTCA TGGACTCTCCTCACACCAGGCTCGGGCAGGATTCCTCCTCA < 41bp 0.474416390056288 0.711801744770646 0.10062826 0.048955083 prediction 0.423603489541293 Functional Gain - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26824118 chr17:26824119 synonymous SNV . 0 22 hm5C_associated_SNPs_123736 0 0 0 0 1 SLC13A2 chr17:26824117 3'AG 26824117 Downstream 3bp
chr17 4635147 4635147 1 + T G LUAD 4635143 + 4635123 4635163 41 CCGGCAGGCGGCGGCCTTCACCGCTTCAGTGCAACACGTGG CCGGCAGGCGGCGGCCTTCACCGCGTCAGTGCAACACGTGG < 41bp 0.517063897787492 0.728862490422803 0.41043693 0.86673045 prediction 0.423597185270623 Functional Gain - MED11 ENSG00000161920 CDS Human protein_coding chr17:4635143 chr17:4635147 synonymous SNV . 0 25 hm5C_associated_SNPs_123738 0 0 0 0 2 MED11 chr17:4635071 3'AG 4635071 Downstream 77bp
chr17 4635147 4635147 1 + T G LUAD 4635143 + 4635123 4635163 41 CCGGCAGGCGGCGGCCTTCACCGCTTCAGTGCAACACGTGG CCGGCAGGCGGCGGCCTTCACCGCGTCAGTGCAACACGTGG < 41bp 0.517063897787492 0.728862490422803 0.41043693 0.86673045 prediction 0.423597185270623 Functional Gain - MED11 ENSG00000161920 CDS Human protein_coding chr17:4635143 chr17:4635147 synonymous SNV . 0 25 hm5C_associated_SNPs_123738 0 0 0 0 2 MED11 chr17:4635201 5'GT 4635201 Upstream 55bp
chr14 89075730 89075730 1 + T C UCEC 89075727 + 89075707 89075747 41 TCATGTGAGTAGAAGAATTCCAGTACTGTCTCCAAAACCAG TCATGTGAGTAGAAGAATTCCAGCACTGTCTCCAAAACCAG < 41bp 0.491322600963512 0.711796793057256 0.04561135 0.038463622 prediction 0.423593586114511 Functional Gain - ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89075727 chr14:89075730 nonsynonymous SNV 0.887 0 24 hm5C_associated_SNPs_123739 0 0 1 0 1 ZC3H14 chr14:89075747 5'GT 89075747 Upstream 18bp
chr10 60546781 60546781 1 + C T COAD 60546780 + 60546760 60546800 41 TAAAAAAGTGATGGAAGAAACCGGATGCCATATCCACTTTC TAAAAAAGTGATGGAAGAAACTGGATGCCATATCCACTTTC < 41bp 0.586711087044626 0.798507373634041 0.660046 0.61541677 prediction 0.423592573178831 Functional Gain - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60546780 chr10:60546781 synonymous SNV . 0 22 hm5C_associated_SNPs_123741 0 0 1 0 2 BICC1 chr10:60546683 3'AG 60546683 Downstream 99bp
chr10 60546781 60546781 1 + C T COAD 60546780 + 60546760 60546800 41 TAAAAAAGTGATGGAAGAAACCGGATGCCATATCCACTTTC TAAAAAAGTGATGGAAGAAACTGGATGCCATATCCACTTTC < 41bp 0.586711087044626 0.798507373634041 0.660046 0.61541677 prediction 0.423592573178831 Functional Gain - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60546780 chr10:60546781 synonymous SNV . 0 22 hm5C_associated_SNPs_123741 0 0 1 0 2 BICC1 chr10:60546841 5'GT 60546841 Upstream 61bp
chr3 9959658 9959658 1 + T G BRCA 9959655 + 9959635 9959675 41 CATCGTGCCTGCTCCGGGCCCCGTGCTGGCGCCTACGCACC CATCGTGCCTGCTCCGGGCCCCGGGCTGGCGCCTACGCACC < 41bp 0.322604464046971 0.71179474724876 0.23279864 0.79678047 prediction 0.42358949449752 Functional Gain - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9959655 chr3:9959658 nonsynonymous SNV 0.904 4 24 hm5C_associated_SNPs_123743 0 0 1 0 2 IL17RC chr3:9959607 3'AG 9959607 Downstream 52bp
chr3 9959658 9959658 1 + T G BRCA 9959655 + 9959635 9959675 41 CATCGTGCCTGCTCCGGGCCCCGTGCTGGCGCCTACGCACC CATCGTGCCTGCTCCGGGCCCCGGGCTGGCGCCTACGCACC < 41bp 0.322604464046971 0.71179474724876 0.23279864 0.79678047 prediction 0.42358949449752 Functional Gain - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9959655 chr3:9959658 nonsynonymous SNV 0.904 4 24 hm5C_associated_SNPs_123743 0 0 1 0 2 IL17RC chr3:9959611 3'AG 9959611 Downstream 48bp
chr17 40125554 40125554 1 + C T LUSC 40125553 + 40125533 40125573 41 TCTCTGCCCTCTTTGTGACACCCAAGACGACTGGGGCCCGG TCTCTGCCCTCTTTGTGACACTCAAGACGACTGGGGCCCGG < 41bp 0.628155068862569 0.839947138631436 0.030604422 0.075107455 prediction 0.423584139537734 Functional Gain - CNP ENSG00000173786 CDS Human protein_coding chr17:40125553 chr17:40125554 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_123745 0 0 1 0 1 CNP chr17:40125493 3'AG 40125493 Downstream 62bp
chr1 150300881 150300881 1 + C T SKCM 150300880 + 150300860 150300900 41 GAAGAAGAGCCAGAGGTGATCCCTGGGCCTCCATCAGAGAG GAAGAAGAGCCAGAGGTGATCTCTGGGCCTCCATCAGAGAG < 41bp 0.451110006052394 0.711774165516675 0.13404447 0.2586385 prediction 0.42354833103335 Functional Gain - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150300880 chr1:150300881 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_123748 0 0 1 0 1 PRPF3 chr1:150300925 5'GT 150300925 Upstream 45bp
chr17 60464769 60464769 1 + A G UCEC 60464766 + 60464746 60464786 41 AGAAAAGAAGCTAAGTGCTTCACAAATGGCAGGTAATGAGA AGAAAAGAAGCTAAGTGCTTCACGAATGGCAGGTAATGAGA < 41bp 0.562772459135544 0.77454287493937 0.13487306 0.1494559 prediction 0.423540831607651 Functional Gain - EFCAB3 ENSG00000172421 CDS Human protein_coding chr17:60464766 chr17:60464769 nonsynonymous SNV 0.921 1 24 hm5C_associated_SNPs_123751 0 0 0 0 2 EFCAB3 chr17:60464701 3'AG 60464701 Downstream 69bp
chr17 60464769 60464769 1 + A G UCEC 60464766 + 60464746 60464786 41 AGAAAAGAAGCTAAGTGCTTCACAAATGGCAGGTAATGAGA AGAAAAGAAGCTAAGTGCTTCACGAATGGCAGGTAATGAGA < 41bp 0.562772459135544 0.77454287493937 0.13487306 0.1494559 prediction 0.423540831607651 Functional Gain - EFCAB3 ENSG00000172421 CDS Human protein_coding chr17:60464766 chr17:60464769 nonsynonymous SNV 0.921 1 24 hm5C_associated_SNPs_123751 0 0 0 0 2 EFCAB3 chr17:60464777 5'GT 60464777 Upstream 9bp
chrX 130217875 130217875 1 + C T COAD 130217874 + 130217854 130217894 41 CGAAGGGTGTTTGGCCGCATCCGGCGCTTTTTCAGTCGCAG CGAAGGGTGTTTGGCCGCATCTGGCGCTTTTTCAGTCGCAG < 41bp 0.574497515766932 0.786264991010136 0.77377427 0.37036714 prediction 0.423534950486407 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130217874 chrX:130217875 nonsynonymous SNV 0.864 4 22 hm5C_associated_SNPs_123753 0 0 0 0 1 ARHGAP36 chrX:130217943 5'GT 130217943 Upstream 69bp
chr11 10515007 10515007 1 + C T STAD 10515006 + 10514986 10515026 41 ACTGTGGCAGAGAAGCGGGGCCGGAAGATCACCCTGCGGCA ACTGTGGCAGAGAAGCGGGGCTGGAAGATCACCCTGCGGCA < 41bp 0.611683094498834 0.823450371572665 0.4156249 0.29391202 prediction 0.423534554147661 Functional Gain - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10515006 chr11:10515007 nonsynonymous SNV 0.798 3 22 hm5C_associated_SNPs_123754 0 0 0 0 1 AMPD3 chr11:10515090 5'GT 10515090 Upstream 84bp
chr1 36056363 36056363 1 + C A BLCA 36056359 + 36056339 36056379 41 GAGCTGCACAGCCGCAAGAGCATGCTGCTGGCTGCCAAGTG GAGCTGCACAGCCGCAAGAGCATGATGCTGGCTGCCAAGTG < 41bp 0.307278373813837 0.711767060868872 0.26971856 0.29693142 prediction 0.423534121737745 Functional Gain - TFAP2E ENSG00000116819 CDS Human protein_coding chr1:36056359 chr1:36056363 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_123755 0 0 0 0 1 TFAP2E chr1:36056376 5'GT 36056376 Upstream 14bp
chr1 1267263 1267263 1 + C A CESC 1267259 + 1267239 1267279 41 TGCTGGCTGTCATCGGGCCCCACTCGTCAGAGCTCGCCATG TGCTGGCTGTCATCGGGCCCCACTAGTCAGAGCTCGCCATG < 41bp 0.310065034494286 0.711758048790067 0.042129487 0.02455771 prediction 0.423516097580134 Functional Gain - TAS1R3 ENSG00000169962 CDS Human protein_coding chr1:1267259 chr1:1267263 stopgain 0.491 0 25 hm5C_associated_SNPs_123759 0 0 0 0 1 TAS1R3 chr1:1267318 5'GT 1267318 Upstream 56bp
chrX 13618177 13618177 1 + A G UCEC 13618174 + 13618154 13618194 41 GAAGCTACAAGTGCTTTTGCCTCAGTGGCCACATGCTCATG GAAGCTACAAGTGCTTTTGCCTCGGTGGCCACATGCTCATG < 41bp 0.604149602740906 0.815902932928037 0.22764114 0.34672496 prediction 0.423506660374263 Functional Gain - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13618174 chrX:13618177 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_123760 0 0 0 0 2 EGFL6 chrX:13618094 3'AG 13618094 Downstream 84bp
chrX 13618177 13618177 1 + A G UCEC 13618174 + 13618154 13618194 41 GAAGCTACAAGTGCTTTTGCCTCAGTGGCCACATGCTCATG GAAGCTACAAGTGCTTTTGCCTCGGTGGCCACATGCTCATG < 41bp 0.604149602740906 0.815902932928037 0.22764114 0.34672496 prediction 0.423506660374263 Functional Gain - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13618174 chrX:13618177 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_123760 0 0 0 0 2 EGFL6 chrX:13618213 5'GT 13618213 Upstream 37bp
chr3 113321906 113321906 1 + C T UCEC 113321905 + 113321885 113321925 41 CCTCCTCCGATGGTGGGCCACCGGGCCAGTCAGACACAGAC CCTCCTCCGATGGTGGGCCACTGGGCCAGTCAGACACAGAC < 41bp 0.611325412342851 0.823076272174369 0.18500432 0.2788074 prediction 0.423501719663037 Functional Gain - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113321905 chr3:113321906 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_123761 0 0 0 0 2 SIDT1 chr3:113321852 3'AG 113321852 Downstream 55bp
chr3 113321906 113321906 1 + C T UCEC 113321905 + 113321885 113321925 41 CCTCCTCCGATGGTGGGCCACCGGGCCAGTCAGACACAGAC CCTCCTCCGATGGTGGGCCACTGGGCCAGTCAGACACAGAC < 41bp 0.611325412342851 0.823076272174369 0.18500432 0.2788074 prediction 0.423501719663037 Functional Gain - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113321905 chr3:113321906 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_123761 0 0 0 0 2 SIDT1 chr3:113321997 5'GT 113321997 Upstream 92bp
chr2 211473157 211473157 1 + C A rs41272667 211473156 + 211473136 211473176 41 AGAAATTAAGAACGTCGTATCCGGGAAGACATCAGCCTGTT AGAAATTAAGAACGTCGTATCAGGGAAGACATCAGCCTGTT < 41bp 0.448370862773755 0.7117468070929 0.8833562 0.9215826 prediction 0.4234936141858 Functional Gain - CPS1 ENSG00000021826 CDS Human protein_coding chr2:211473156 chr2:211473157 synonymous SNV . 0 22 hm5C_associated_SNPs_123762 2 0 1 0 1 CPS1 chr2:211473085 3'AG 211473085 Downstream 73bp
chr20 21689898 21689898 1 + C T PCPG 21689897 + 21689877 21689917 41 TGCCGTGGGCGGCTTTCTCCCCGCCTGCGCCTACCCGGCCT TGCCGTGGGCGGCTTTCTCCCTGCCTGCGCCTACCCGGCCT < 41bp 0.6001265934901 0.811871887567209 0.155368 0.17323318 prediction 0.423490588154218 Functional Gain - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21689897 chr20:21689898 synonymous SNV . 0 22 hm5C_associated_SNPs_123763 0 0 0 0 1 PAX1 chr20:21689860 3'AG 21689860 Downstream 39bp
chrX 36103589 36103589 1 + T C LIHC 36103586 + 36103566 36103606 41 TAATTCAAGTCAATCTTTACCTGTAGATAACCATGAAAAAA TAATTCAAGTCAATCTTTACCTGCAGATAACCATGAAAAAA < 41bp 0.54825211098199 0.759990265188033 0.061052293 0.06261274 prediction 0.423476308412086 Functional Gain - CFAP47 ENSG00000176034 CDS Human other chrX:36103586 chrX:36103589 nonsynonymous SNV 0.071 0 24 hm5C_associated_SNPs_123766 0 0 0 0 1 CFAP47 chrX:36103655 5'GT 36103655 Upstream 67bp
chr21 44589386 44589386 1 + C T LUSC 44589385 + 44589365 44589405 41 CTTCCGCACCGTGCTGGACTCCGGCATCTCTGAGGTAAGAC CTTCCGCACCGTGCTGGACTCTGGCATCTCTGAGGTAAGAC < 41bp 0.546856090988782 0.758590897529183 0.24715734 0.27690032 prediction 0.423469613080801 Functional Gain - CRYAA;LOC102724652 ENSG00000160202 CDS Human protein_coding chr21:44589385 chr21:44589386 synonymous SNV . 0 22 hm5C_associated_SNPs_123769 0 0 0 0 1 CRYAA;LOC102724652 chr21:44589398 5'GT 44589398 Upstream 13bp
chr1 186934657 186934657 1 + A G UCEC 186934654 + 186934634 186934674 41 ATCCCTTGATACTGAGACCTCAGAGAGGGGTTGATCTCATA ATCCCTTGATACTGAGACCTCAGGGAGGGGTTGATCTCATA < 41bp 0.562296795421194 0.774031402033122 0.3292454 0.824865 prediction 0.423469213223857 Functional Gain - PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186934654 chr1:186934657 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_123770 0 0 0 0 1 PLA2G4A chr1:186934725 5'GT 186934725 Upstream 69bp
chr21 47537822 47537822 1 + C T SKCM 47537821 + 47537801 47537841 41 ACCCGGGGGAAGCAGGGAGTCCAGGGGAGCGAGGAGACCAA ACCCGGGGGAAGCAGGGAGTCTAGGGGAGCGAGGAGACCAA < 41bp 0.588510992108391 0.800243198973915 0.87193865 0.8313352 prediction 0.423464413731049 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47537821 chr21:47537822 nonsynonymous SNV 0.011 1 22 hm5C_associated_SNPs_123771 0 0 0 0 2 COL6A2 chr21:47537788 3'AG 47537788 Downstream 35bp
chr21 47537822 47537822 1 + C T SKCM 47537821 + 47537801 47537841 41 ACCCGGGGGAAGCAGGGAGTCCAGGGGAGCGAGGAGACCAA ACCCGGGGGAAGCAGGGAGTCTAGGGGAGCGAGGAGACCAA < 41bp 0.588510992108391 0.800243198973915 0.87193865 0.8313352 prediction 0.423464413731049 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47537821 chr21:47537822 nonsynonymous SNV 0.011 1 22 hm5C_associated_SNPs_123771 0 0 0 0 2 COL6A2 chr21:47537850 5'GT 47537850 Upstream 29bp
chr5 169129422 169129422 1 + A G rs2306559 169129419 + 169129399 169129439 41 TGTGTGTGCGCGGAGGATGGCAAAACGCTGCCTGTAAGGGA TGTGTGTGCGCGGAGGATGGCAAGACGCTGCCTGTAAGGGA < 41bp 0.483806744004947 0.711730941187079 0.15299368 0.24559242 prediction 0.423461882374159 Functional Gain - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169129419 chr5:169129422 synonymous SNV . 0 24 hm5C_associated_SNPs_123772 0 0 1 0 1 DOCK2 chr5:169129431 5'GT 169129431 Upstream 10bp
chr14 95034589 95034589 1 + C T PRAD 95034588 + 95034568 95034608 41 CTCCAAGTGGGCTGACTTATCCGGCATCACCAAACAGCAAA CTCCAAGTGGGCTGACTTATCTGGCATCACCAAACAGCAAA < 41bp 0.589656369677304 0.80137688225751 0.8968972 0.8395648 prediction 0.423441025160412 Functional Gain - SERPINA4 ENSG00000100665 CDS Human protein_coding chr14:95034588 chr14:95034589 synonymous SNV . 0 22 hm5C_associated_SNPs_123779 0 0 1 0 1 SERPINA4 chr14:95034625 5'GT 95034625 Upstream 37bp
chr1 22417930 22417930 1 + A G STAD 22417927 + 22417907 22417947 41 CTACCCCTTTTCAGAAAGGCCTAAAGAATGTATTTGACGAA CTACCCCTTTTCAGAAAGGCCTAGAGAATGTATTTGACGAA < 41bp 0.520229212324793 0.731943120412685 0.04415542 0.036620498 prediction 0.423427816175786 Functional Gain - CDC42 ENSG00000070831 CDS Human protein_coding chr1:22417927 chr1:22417930 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_123780 0 0 1 0 1 CDC42 chr1:22417921 3'AG 22417921 Downstream 10bp
chr1 53708157 53708157 1 + C T rs144711851 53708156 + 53708136 53708176 41 AGTGAGATGCAGCACCCCATCCTCAGCCCCCTCGCCTCTGG AGTGAGATGCAGCACCCCATCTTCAGCCCCCTCGCCTCTGG < 41bp 0.59182387406644 0.803534900665516 0.062879026 0.1967713 prediction 0.423422053198151 Functional Gain - LOC100507564 ENSG00000226754;ENSG00000270172 ncRNA_exonic Human other chr1:53708156 chr1:53708157 . . 0 22 hm5C_associated_SNPs_123781 0 0 1 0 1 LOC100507564 chr1:53708110 3'AG 53708110 Downstream 48bp
chrX 135289283 135289283 1 + T C BLCA 135289280 + 135289260 135289300 41 TGGCCAAGGACAACAAGATCCTGTGCAACAAGTGCACCACT TGGCCAAGGACAACAAGATCCTGCGCAACAAGTGCACCACT < 41bp 0.510054239773372 0.721764546065848 0.31022137 0.33796352 prediction 0.423420612584953 Functional Gain - FHL1 ENSG00000022267 CDS Human protein_coding chrX:135289280 chrX:135289283 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_123782 0 0 1 0 1 FHL1 chrX:135289349 5'GT 135289349 Upstream 67bp
chr1 32660512 32660512 1 + C T COAD 32660511 + 32660491 32660531 41 TTCTTTCCCTAGAAAACAGTCCGGGATAAAGAACTGGAGGG TTCTTTCCCTAGAAAACAGTCTGGGATAAAGAACTGGAGGG < 41bp 0.482026781286133 0.711703440398998 0.57333785 0.56606346 prediction 0.423406880797996 Functional Gain - TXLNA ENSG00000084652 CDS Human protein_coding chr1:32660511 chr1:32660512 nonsynonymous SNV 0.988 4 22 hm5C_associated_SNPs_123785 0 0 1 0 1 TXLNA chr1:32660503 3'AG 32660503 Downstream 10bp
chr19 46663940 46663940 1 + T C UCEC 46663938 + 46663918 46663958 41 GGAGACAAGATCTACAACCCCTTGGAGCAGTGCTGTTACAA GGAGACAAGATCTACAACCCCTCGGAGCAGTGCTGTTACAA < 41bp 0.63894268422144 0.850637458234757 0.020887613 0.08271763 prediction 0.423389548026633 Functional Gain - IGFL2 ENSG00000204866 CDS Human protein_coding chr19:46663938 chr19:46663940 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_123787 0 0 0 0 1 IGFL2 chr19:46663871 3'AG 46663871 Downstream 70bp
chr12 2994642 2994642 1 + T C UCEC 2994640 + 2994620 2994660 41 TGTGCATCTACACAGCTTCCCATCACTCACACTCGACAGGT TGTGCATCTACACAGCTTCCCACCACTCACACTCGACAGGT < 41bp 0.438056147251385 0.711690532827749 0.018372744 0.005004406 prediction 0.423381065655499 Functional Gain - RHNO1 ENSG00000171792 CDS Human protein_coding chr12:2994640 chr12:2994642 nonsynonymous SNV 0.007 0 23 hm5C_associated_SNPs_123791 0 0 1 0 2 RHNO1 chr12:2994658 5'GT 2994658 Upstream 17bp
chr12 2994642 2994642 1 + T C UCEC 2994640 + 2994620 2994660 41 TGTGCATCTACACAGCTTCCCATCACTCACACTCGACAGGT TGTGCATCTACACAGCTTCCCACCACTCACACTCGACAGGT < 41bp 0.438056147251385 0.711690532827749 0.018372744 0.005004406 prediction 0.423381065655499 Functional Gain - RHNO1 ENSG00000171792 CDS Human protein_coding chr12:2994640 chr12:2994642 nonsynonymous SNV 0.007 0 23 hm5C_associated_SNPs_123791 0 0 1 0 2 RHNO1 chr12:2994700 5'GT 2994700 Upstream 59bp
chr19 3543426 3543426 1 + C T rs528470674 3543425 + 3543405 3543445 41 CCCTTCCGCGAGGCCTACAACCGCTGGCACAGCTGCTACCA CCCTTCCGCGAGGCCTACAACTGCTGGCACAGCTGCTACCA < 41bp 0.594808507926264 0.806494679163696 0.12251547 0.21504462 prediction 0.423372342474863 Functional Gain - C19orf71 ENSG00000183397 CDS Human protein_coding chr19:3543425 chr19:3543426 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_123793 0 0 1 0 1 C19orf71 chr19:3543471 5'GT 3543471 Upstream 46bp
chr1 201823789 201823789 1 + C A SKCM 201823788 + 201823768 201823808 41 GAGGCCTTTGTTCAGGCCCTCCAGATACCAGATGGCCCCAC GAGGCCTTTGTTCAGGCCCTCAAGATACCAGATGGCCCCAC < 41bp 0.450451184982293 0.711680453179284 0.6487206 0.8792349 prediction 0.423360906358569 Functional Gain - IPO9 ENSG00000198700 CDS Human protein_coding chr1:201823788 chr1:201823789 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_123796 0 0 1 0 1 IPO9 chr1:201823842 5'GT 201823842 Upstream 54bp
chr1 44365346 44365346 1 + T A LUAD 44365342 + 44365322 44365362 41 GATTCTCTCTTTGTCCTCGCCGGCTTCAAGTGGCAGGACTT GATTCTCTCTTTGTCCTCGCCGGCATCAAGTGGCAGGACTT < 41bp 0.436866034858313 0.71168032627954 0.8399948 0.76462907 prediction 0.42336065255908 Functional Gain - ST3GAL3 ENSG00000126091 CDS Human protein_coding chr1:44365342 chr1:44365346 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_123797 0 0 1 0 1 ST3GAL3 chr1:44365399 5'GT 44365399 Upstream 54bp
chr19 55587824 55587824 1 + C A LUSC 55587823 + 55587803 55587843 41 ACTCAGCACCATGAGCACCGCCACAGGGTAAGCGCCCCCGG ACTCAGCACCATGAGCACCGCAACAGGGTAAGCGCCCCCGG < 41bp 0.600532282702828 0.812212227377566 0.029887617 0.033771247 prediction 0.423359889349478 Functional Gain - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55587823 chr19:55587824 synonymous SNV . 0 22 hm5C_associated_SNPs_123798 0 0 0 0 1 EPS8L1 chr19:55587776 3'AG 55587776 Downstream 49bp
chr18 29116339 29116339 1 + T C LIHC 29116337 + 29116317 29116357 41 AGTGGCCCTTTCAGTTTCTCCGTCATTGACAAACCACCTGG AGTGGCCCTTTCAGTTTCTCCGCCATTGACAAACCACCTGG < 41bp 0.65962269823794 0.871299570319625 0.18651554 0.54762787 prediction 0.423353744163369 Functional Gain - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116337 chr18:29116339 nonsynonymous SNV 0.664 1 23 hm5C_associated_SNPs_123799 0 0 1 0 1 DSG2 chr18:29116392 5'GT 29116392 Upstream 54bp
chr12 124086736 124086736 1 + T G rs141195308 124086733 + 124086713 124086753 41 GGGCTCCTGGGAGTCGCTGCCTGTGCCGCTGCACCCGCAGG GGGCTCCTGGGAGTCGCTGCCTGGGCCGCTGCACCCGCAGG < 41bp 0.719129221062741 0.930801891011497 0.054997385 0.32783 prediction 0.423345339897514 Functional Gain - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124086733 chr12:124086736 nonsynonymous SNV 0.021 0 24 hm5C_associated_SNPs_123800 0 0 1 0 1 DDX55 chr12:124086803 5'GT 124086803 Upstream 68bp
chr10 13230995 13230995 1 + C T rs116465689 13230994 + 13230974 13231014 41 CGAATTCCAAAGAAGTTTGCCCGCAGAGGCACCAGCCTCAA CGAATTCCAAAGAAGTTTGCCTGCAGAGGCACCAGCCTCAA < 41bp 0.63036319367787 0.842034203804295 0.11697501 0.29671308 prediction 0.42334202025285 Functional Gain - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13230994 chr10:13230995 nonsynonymous SNV 0.852 1 22 hm5C_associated_SNPs_123801 0 0 1 0 1 MCM10 chr10:13231080 5'GT 13231080 Upstream 86bp
chr12 117465849 117465849 1 + C T HNSC 117465848 + 117465828 117465868 41 TCTAGACACCGGGGGCTGATCCGCGCCTATGAGTTTGCGGT TCTAGACACCGGGGGCTGATCTGCGCCTATGAGTTTGCGGT < 41bp 0.46382110077817 0.7116707254866 0.6034136 0.46565086 prediction 0.4233414509732 Functional Gain - FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117465848 chr12:117465849 nonsynonymous SNV 0.700 0 22 hm5C_associated_SNPs_123802 0 0 0 0 1 FBXW8 chr12:117465833 3'AG 117465833 Downstream 17bp
chr8 75272475 75272475 1 + T C COAD 75272473 + 75272453 75272493 41 TGCCAATGGATGCCTATACACATGGCTGCATTTTACATCCT TGCCAATGGATGCCTATACACACGGCTGCATTTTACATCCT < 41bp 0.652274843635705 0.863940143344333 0.28222424 0.14732209 prediction 0.423330599417257 Functional Gain - GDAP1 ENSG00000104381 CDS Human protein_coding chr8:75272473 chr8:75272475 synonymous SNV . 0 23 hm5C_associated_SNPs_123805 0 0 0 0 1 GDAP1 chr8:75272545 5'GT 75272545 Upstream 71bp
chr16 2460391 2460391 1 + C T rs184816316 2460390 + 2460370 2460410 41 TGGTGCCAGGGCTTCCATTACCGCAGCCAACCACCCTCAAC TGGTGCCAGGGCTTCCATTACTGCAGCCAACCACCCTCAAC < 41bp 0.546651574301815 0.758314655311919 0.64665914 0.19697109 prediction 0.423326162020209 Functional Gain - ABCA17P ENSG00000238098 ncRNA_exonic Human transcribed_unitary_pseudogene chr16:2460390 chr16:2460391 . . 0 22 hm5C_associated_SNPs_123806 0 0 0 0 1 ABCA17P chr16:2460450 5'GT 2460450 Upstream 60bp
chr20 44640353 44640353 1 + C A UCEC 44640352 + 44640332 44640372 41 GCCACCACCGCCAACTACGACCGGGACAAGCTCTTCGGCTT GCCACCACCGCCAACTACGACAGGGACAAGCTCTTCGGCTT < 41bp 0.634151055198611 0.845805224807159 0.9303142 0.9429339 prediction 0.423308339217098 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44640352 chr20:44640353 synonymous SNV . 0 22 hm5C_associated_SNPs_123808 0 0 0 0 1 MMP9 chr20:44640386 5'GT 44640386 Upstream 34bp
chr12 48361973 48361973 1 + T G LUSC 48361971 + 48361951 48361991 41 CCCAGAGCTCCTTGGAGACACATCACTATGTGGATTGTGGA CCCAGAGCTCCTTGGAGACACAGCACTATGTGGATTGTGGA < 41bp 0.384430397748999 0.711653854993185 0.13753971 0.16123196 prediction 0.42330770998637 Functional Gain - TMEM106C ENSG00000134291 CDS Human protein_coding chr12:48361971 chr12:48361973 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_123810 0 0 1 0 1 TMEM106C chr12:48361916 3'AG 48361916 Downstream 58bp
chr3 52540747 52540747 1 + A G STAD 52540744 + 52540724 52540764 41 GACCCGAGGGGGTCCCGCTGCAGAGGGTAGACGTGATGGCC GACCCGAGGGGGTCCCGCTGCAGGGGGTAGACGTGATGGCC < 41bp 0.573185321797433 0.784832514122199 0.33775857 0.88957155 prediction 0.423294384649532 Functional Gain - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52540744 chr3:52540747 nonsynonymous SNV 0.081 1 24 hm5C_associated_SNPs_123812 0 0 0 0 1 STAB1 chr3:52540708 3'AG 52540708 Downstream 40bp
chr3 170108078 170108078 1 + A G UCEC 170108075 + 170108055 170108095 41 TCTGCCACTTGCAACTTAGTCAGAGACATAAACAAAGTGGG TCTGCCACTTGCAACTTAGTCAGGGACATAAACAAAGTGGG < 41bp 0.57591394566178 0.78755947539109 0.8613254 0.88653076 prediction 0.423291059458619 Functional Gain - SKIL ENSG00000136603 CDS Human protein_coding chr3:170108075 chr3:170108078 synonymous SNV . 0 24 hm5C_associated_SNPs_123814 0 0 1 0 1 SKIL chr3:170108011 3'AG 170108011 Downstream 68bp
chr14 21464860 21464860 1 + C T STAD 21464859 + 21464839 21464879 41 CATGCTGTGCTCACAGCCCGCCGGCACGGCAGGTATGGGGG CATGCTGTGCTCACAGCCCGCTGGCACGGCAGGTATGGGGG < 41bp 0.573590041555297 0.785233853039944 0.054171145 0.07915044 prediction 0.423287622969293 Functional Gain - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21464859 chr14:21464860 nonsynonymous SNV 0.982 3 22 hm5C_associated_SNPs_123815 0 0 1 0 1 METTL17 chr14:21464870 5'GT 21464870 Upstream 11bp
chr19 42402593 42402593 1 + C T rs2303797 42402592 + 42402572 42402612 41 ACAAGGCCTCTGTCCACAGCCCCGAGCCTGGAGATGAGGGG ACAAGGCCTCTGTCCACAGCCTCGAGCCTGGAGATGAGGGG < 41bp 0.463127607969403 0.711634271605345 0.3439476 0.51713824 prediction 0.42326854321069 Functional Gain - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42402592 chr19:42402593 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_123818 0 0 1 0 1 ARHGEF1 chr19:42402591 3'AG 42402591 Downstream 3bp
chr3 53769491 53769491 1 + C T BLCA 53769490 + 53769470 53769510 41 GCTGAGCAGCGCTGCCCTGGCCGCAGAGGACCCCATCCGCA GCTGAGCAGCGCTGCCCTGGCTGCAGAGGACCCCATCCGCA < 41bp 0.60652481170765 0.818155808938727 0.11344051 0.08961928 prediction 0.423261994462153 Functional Gain - CACNA1D ENSG00000157388 CDS Human protein_coding chr3:53769490 chr3:53769491 synonymous SNV . 0 22 hm5C_associated_SNPs_123820 0 0 0 0 2 CACNA1D chr3:53769401 3'AG 53769401 Downstream 91bp
chr3 53769491 53769491 1 + C T BLCA 53769490 + 53769470 53769510 41 GCTGAGCAGCGCTGCCCTGGCCGCAGAGGACCCCATCCGCA GCTGAGCAGCGCTGCCCTGGCTGCAGAGGACCCCATCCGCA < 41bp 0.60652481170765 0.818155808938727 0.11344051 0.08961928 prediction 0.423261994462153 Functional Gain - CACNA1D ENSG00000157388 CDS Human protein_coding chr3:53769490 chr3:53769491 synonymous SNV . 0 22 hm5C_associated_SNPs_123820 0 0 0 0 2 CACNA1D chr3:53769530 5'GT 53769530 Upstream 40bp
chr8 19805739 19805739 1 + C G LAML 19805738 + 19805718 19805758 41 GTAAATTTGCCCTAAGGACCCCTGAAGACACAGCTGAGGAC GTAAATTTGCCCTAAGGACCCGTGAAGACACAGCTGAGGAC < 41bp 0.392223381617522 0.711630854968539 0.033729136 0.05584523 prediction 0.423261709937078 Functional Gain - LPL ENSG00000175445 CDS Human protein_coding chr8:19805738 chr8:19805739 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_123821 0 0 1 0 1 LPL chr8:19805691 3'AG 19805691 Downstream 49bp
chr12 53818682 53818682 1 + C A rs202187359 53818681 + 53818661 53818701 41 CCCAGGGTCCCCAGGCTGCCCCAGGTAGCCACCCAAGGGTA CCCAGGGTCCCCAGGCTGCCCAAGGTAGCCACCCAAGGGTA < 41bp 0.618406481526775 0.830034084670778 0.79816127 0.79225296 prediction 0.423255206288005 Functional Gain - AMHR2 ENSG00000135409 CDS Human protein_coding chr12:53818681 chr12:53818682 nonsynonymous SNV 0.738 1 22 hm5C_associated_SNPs_123823 0 0 0 0 1 AMHR2 chr12:53818684 5'GT 53818684 Upstream 3bp
chr2 120005733 120005733 1 + C T SKCM 120005732 + 120005712 120005752 41 CCCTCTACAGCTTCTGCTTGCCGCTGCGCCGCGCCCACCGC CCCTCTACAGCTTCTGCTTGCTGCTGCGCCGCGCCCACCGC < 41bp 0.456128502878381 0.711617516421492 0.12197411 0.15128693 prediction 0.423235032842984 Functional Gain - STEAP3 ENSG00000115107 CDS Human protein_coding chr2:120005732 chr2:120005733 nonsynonymous SNV 0.016 4 22 hm5C_associated_SNPs_123824 0 0 1 0 1 STEAP3 chr2:120005782 5'GT 120005782 Upstream 50bp
chr19 10748590 10748590 1 + T C CESC 10748588 + 10748568 10748608 41 AGGAATGCCTTCTTCCTGCTCATGAGAAACATCATCAGGTC AGGAATGCCTTCTTCCTGCTCACGAGAAACATCATCAGGTC < 41bp 0.646295893097279 0.857911605622316 0.18759441 0.23044941 prediction 0.423231425050075 Functional Gain - SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10748588 chr19:10748590 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_123825 0 0 1 0 1 SLC44A2 chr19:10748605 5'GT 10748605 Upstream 16bp
chr10 85973847 85973847 1 + C T STAD 85973846 + 85973826 85973866 41 TTTCTCTTTCAGACCCTCTCCCGGAGCCCCATGGCTGCCTT TTTCTCTTTCAGACCCTCTCCTGGAGCCCCATGGCTGCCTT < 41bp 0.610190737186627 0.821794990294303 0.92232305 0.90070975 prediction 0.423208506215352 Functional Gain - CDHR1 ENSG00000148600 CDS Human protein_coding chr10:85973846 chr10:85973847 nonsynonymous SNV 0.016 1 22 hm5C_associated_SNPs_123830 0 0 0 0 1 CDHR1 chr10:85973838 3'AG 85973838 Downstream 10bp
chr2 201756722 201756722 1 + T C UCEC 201756720 + 201756700 201756740 41 ACAGTCCGGTTTGTAGATTCCCTGATCTGCAATTCTTCCCG ACAGTCCGGTTTGTAGATTCCCCGATCTGCAATTCTTCCCG < 41bp 0.628085962502111 0.839686817722785 0.19402206 0.069734275 prediction 0.423201710441348 Functional Gain - NIF3L1 ENSG00000196290 CDS Human protein_coding chr2:201756720 chr2:201756722 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_123831 0 0 1 0 1 NIF3L1 chr2:201756692 3'AG 201756692 Downstream 31bp
chr16 67913372 67913372 1 + C A UCEC 67913371 + 67913351 67913391 41 GCTGAACCCTGATGTGGTGGCCCCACTGCCCACCCACACTG GCTGAACCCTGATGTGGTGGCACCACTGCCCACCCACACTG < 41bp 0.624882034508199 0.836480575152983 0.077962846 0.092906445 prediction 0.423197081289568 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67913371 chr16:67913372 synonymous SNV . 0 22 hm5C_associated_SNPs_123833 0 0 1 0 2 EDC4 chr16:67913315 3'AG 67913315 Downstream 58bp
chr16 67913372 67913372 1 + C A UCEC 67913371 + 67913351 67913391 41 GCTGAACCCTGATGTGGTGGCCCCACTGCCCACCCACACTG GCTGAACCCTGATGTGGTGGCACCACTGCCCACCCACACTG < 41bp 0.624882034508199 0.836480575152983 0.077962846 0.092906445 prediction 0.423197081289568 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67913371 chr16:67913372 synonymous SNV . 0 22 hm5C_associated_SNPs_123833 0 0 1 0 2 EDC4 chr16:67913406 5'GT 67913406 Upstream 35bp
chr2 73471708 73471708 1 + C T UCEC 73471707 + 73471687 73471727 41 GCTGGAAAAGTGTGCCATGACCGCTCTGAGCTCCAAGCTGA GCTGGAAAAGTGTGCCATGACTGCTCTGAGCTCCAAGCTGA < 41bp 0.61177185919033 0.823370160523595 0.13363701 0.16750666 prediction 0.423196602666531 Functional Gain - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73471707 chr2:73471708 synonymous SNV . 0 22 hm5C_associated_SNPs_123834 0 0 1 0 1 CCT7 chr2:73471672 3'AG 73471672 Downstream 37bp
chr11 105774591 105774591 1 + C T COAD 105774590 + 105774570 105774610 41 CTTGTGATGGCTGAAACTTTCCGAAGTCTTAGGAGGCAGAA CTTGTGATGGCTGAAACTTTCTGAAGTCTTAGGAGGCAGAA < 41bp 0.462144143949516 0.711597126637851 0.62391245 0.27569252 prediction 0.423194253275703 Functional Gain - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105774590 chr11:105774591 stopgain 0.916 1 22 hm5C_associated_SNPs_123835 0 0 0 0 1 GRIA4 chr11:105774540 3'AG 105774540 Downstream 52bp
chr15 45564527 45564527 1 + C T rs143163315 45564526 + 45564506 45564546 41 TCACCGGAAGAGTGACTTGTCCAAGGTTGTGGTCAGGGCCC TCACCGGAAGAGTGACTTGTCTAAGGTTGTGGTCAGGGCCC < 41bp 0.476660772629827 0.711584377246114 0.18398541 0.035249412 prediction 0.423168754492229 Functional Gain - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45564526 chr15:45564527 synonymous SNV . 0 22 hm5C_associated_SNPs_123837 0 0 0 0 2 SLC28A2 chr15:45564493 3'AG 45564493 Downstream 35bp
chr15 45564527 45564527 1 + C T rs143163315 45564526 + 45564506 45564546 41 TCACCGGAAGAGTGACTTGTCCAAGGTTGTGGTCAGGGCCC TCACCGGAAGAGTGACTTGTCTAAGGTTGTGGTCAGGGCCC < 41bp 0.476660772629827 0.711584377246114 0.18398541 0.035249412 prediction 0.423168754492229 Functional Gain - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45564526 chr15:45564527 synonymous SNV . 0 22 hm5C_associated_SNPs_123837 0 0 0 0 2 SLC28A2 chr15:45564591 5'GT 45564591 Upstream 65bp
chr22 32257381 32257381 1 + C T DLBC 32257380 + 32257360 32257400 41 GCCTTCTTTATGGAGTTTGTCCGCAGCCCACGCACAGCATC GCCTTCTTTATGGAGTTTGTCTGCAGCCCACGCACAGCATC < 41bp 0.594947714481263 0.806527230816229 0.26269296 0.20225626 prediction 0.423159032669931 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32257380 chr22:32257381 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_123838 0 0 0 0 2 DEPDC5 chr22:32257354 3'AG 32257354 Downstream 28bp
chr22 32257381 32257381 1 + C T DLBC 32257380 + 32257360 32257400 41 GCCTTCTTTATGGAGTTTGTCCGCAGCCCACGCACAGCATC GCCTTCTTTATGGAGTTTGTCTGCAGCCCACGCACAGCATC < 41bp 0.594947714481263 0.806527230816229 0.26269296 0.20225626 prediction 0.423159032669931 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32257380 chr22:32257381 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_123838 0 0 0 0 2 DEPDC5 chr22:32257419 5'GT 32257419 Upstream 39bp
chr1 86951077 86951077 1 + C A LUAD 86951073 + 86951053 86951093 41 CACAACAAAGAAGCTCCAAACAAGCAAAATCAAAAATGCAA CACAACAAAGAAGCTCCAAACAAGAAAAATCAAAAATGCAA < 41bp 0.302194963153483 0.711575151555677 0.118067026 0.13920143 prediction 0.423150303111353 Functional Gain - CLCA1 ENSG00000016490 CDS Human protein_coding chr1:86951073 chr1:86951077 nonsynonymous SNV 0.620 3 25 hm5C_associated_SNPs_123841 0 0 0 0 1 CLCA1 chr1:86951026 3'AG 86951026 Downstream 52bp
chr1 75622628 75622628 1 + T A LUSC 75622624 + 75622604 75622644 41 CCACAAGAAACACGTCAGTCCTAATCACTCATCCTCCACCC CCACAAGAAACACGTCAGTCCTAAACACTCATCCTCCACCC < 41bp 0.367370131879042 0.711569033856461 0.082326174 0.05408773 prediction 0.423138067712923 Functional Gain - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75622624 chr1:75622628 nonsynonymous SNV 0.994 2 25 hm5C_associated_SNPs_123843 0 0 0 0 1 LHX8 chr1:75622578 3'AG 75622578 Downstream 51bp
chr12 100706286 100706286 1 + A G PRAD 100706283 + 100706263 100706303 41 AAATCCTGAATATTTGGCTCCTGAATACATACTTTCTGTGA AAATCCTGAATATTTGGCTCCTGGATACATACTTTCTGTGA < 41bp 0.488427340845893 0.711565093667994 0.2355296 0.42243135 prediction 0.423130187335988 Functional Gain - SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100706283 chr12:100706286 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_123845 0 0 1 0 1 SCYL2 chr12:100706210 3'AG 100706210 Downstream 77bp
chr1 65871733 65871733 1 + C T SKCM 65871732 + 65871712 65871752 41 CCAGCATGCCCCACTCCTCTCCCCAGAACCGACCCAACTAC CCAGCATGCCCCACTCCTCTCTCCAGAACCGACCCAACTAC < 41bp 0.653646186644062 0.865206331166023 0.18070978 0.9495292 prediction 0.423120289043922 Functional Gain - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65871732 chr1:65871733 nonsynonymous SNV 0.918 2 22 hm5C_associated_SNPs_123847 0 0 0 0 1 DNAJC6 chr1:65871816 5'GT 65871816 Upstream 84bp
chr9 133952711 133952711 1 + C T COAD 133952710 + 133952690 133952730 41 ACCTGGCCTTGCTGGCTTCCCCGGGAGCTCTGGTCAGCTCA ACCTGGCCTTGCTGGCTTCCCTGGGAGCTCTGGTCAGCTCA < 41bp 0.483030922718482 0.711558619306722 0.91750884 0.8935199 prediction 0.423117238613444 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133952710 chr9:133952711 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_123848 0 0 0 0 1 LAMC3 chr9:133952721 5'GT 133952721 Upstream 11bp
chr1 44156708 44156708 1 + C T PRAD 44156707 + 44156687 44156727 41 TCCTGCAAGAAGTGCAGCGTCCGGGTCCATGCCAGTGAGTG TCCTGCAAGAAGTGCAGCGTCTGGGTCCATGCCAGTGAGTG < 41bp 0.579714816528497 0.791270857919718 0.45140013 0.32355154 prediction 0.423112082782441 Functional Gain - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44156707 chr1:44156708 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_123851 0 0 1 0 1 KDM4A chr1:44156720 5'GT 44156720 Upstream 13bp
chr22 46452769 46452769 1 + C T rs147982350 46452768 + 46452748 46452788 41 AGATGGAATTCGCCGTTTTGCCGCGATTTGGCGTTAACTTA AGATGGAATTCGCCGTTTTGCTGCGATTTGGCGTTAACTTA < 41bp 0.524459258117803 0.73600231409378 0.13820869 0.049726248 prediction 0.423086111951955 Functional Gain - PRR34-AS1 ENSG00000241990 ncRNA_exonic Human antisense chr22:46452768 chr22:46452769 . . 0 22 hm5C_associated_SNPs_123857 0 0 1 0 2 PRR34-AS1 chr22:46452727 3'AG 46452727 Downstream 43bp
chr22 46452769 46452769 1 + C T rs147982350 46452768 + 46452748 46452788 41 AGATGGAATTCGCCGTTTTGCCGCGATTTGGCGTTAACTTA AGATGGAATTCGCCGTTTTGCTGCGATTTGGCGTTAACTTA < 41bp 0.524459258117803 0.73600231409378 0.13820869 0.049726248 prediction 0.423086111951955 Functional Gain - PRR34-AS1 ENSG00000241990 ncRNA_exonic Human antisense chr22:46452768 chr22:46452769 . . 0 22 hm5C_associated_SNPs_123857 0 0 1 0 2 PRR34-AS1 chr22:46452825 5'GT 46452825 Upstream 57bp
chr15 83788350 83788350 1 + C T rs529704524 83788349 + 83788329 83788369 41 GGGTGAACCGTATCTGAACACCGCATATGGGCACATGATCT GGGTGAACCGTATCTGAACACTGCATATGGGCACATGATCT < 41bp 0.612412805899928 0.82395523554432 0.18101618 0.23851287 prediction 0.423084859288784 Functional Gain - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83788349 chr15:83788350 synonymous SNV . 0 22 hm5C_associated_SNPs_123858 0 0 1 1 1 TM6SF1 chr15:83788433 5'GT 83788433 Upstream 84bp
chr1 236906233 236906233 1 + A G STAD 236906230 + 236906210 236906250 41 CTGGCAGAGGCTGGAGCAGGCTGAGAAGGGTTACGAGGAGT CTGGCAGAGGCTGGAGCAGGCTGGGAAGGGTTACGAGGAGT < 41bp 0.599354240153912 0.810884729963041 0.54038805 0.79034996 prediction 0.423060979618257 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236906230 chr1:236906233 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_123866 0 0 0 0 2 ACTN2 chr1:236906196 3'AG 236906196 Downstream 38bp
chr1 236906233 236906233 1 + A G STAD 236906230 + 236906210 236906250 41 CTGGCAGAGGCTGGAGCAGGCTGAGAAGGGTTACGAGGAGT CTGGCAGAGGCTGGAGCAGGCTGGGAAGGGTTACGAGGAGT < 41bp 0.599354240153912 0.810884729963041 0.54038805 0.79034996 prediction 0.423060979618257 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236906230 chr1:236906233 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_123866 0 0 0 0 2 ACTN2 chr1:236906219 3'AG 236906219 Downstream 15bp
chrX 8433994 8433994 1 + T C rs757924718 8433992 + 8433972 8434012 41 GAGGGGACCCAGCACGACCCCCTGAGTCAGGAGAGCGAGCT GAGGGGACCCAGCACGACCCCCCGAGTCAGGAGAGCGAGCT < 41bp 0.620948960359901 0.83247719372509 0.06116888 0.05567676 prediction 0.423056466730378 Functional Gain - VCX3B ENSG00000205642 CDS Human other chrX:8433992 chrX:8433994 nonsynonymous SNV 0.009 2 23 hm5C_associated_SNPs_123867 0 0 0 0 1 VCX3B chrX:8434040 5'GT 8434040 Upstream 47bp
chr14 96848810 96848810 1 + T A UCEC 96848806 + 96848786 96848826 41 GTGGAAACAAAGGAAAGAAACAGATATTGCCTAGAACTCAC GTGGAAACAAAGGAAAGAAACAGAAATTGCCTAGAACTCAC < 41bp 0.581186948835565 0.79271114527951 0.46775383 0.47025332 prediction 0.423048392887889 Functional Gain - GSKIP ENSG00000100744 CDS Human protein_coding chr14:96848806 chr14:96848810 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_123868 0 0 1 0 1 GSKIP chr14:96848842 5'GT 96848842 Upstream 33bp
chr2 71909733 71909733 1 + C T rs185617318 71909732 + 71909712 71909752 41 TTCATCCTGTGGCGGCGTTTCCGGTGGGCCATCATCCTCTT TTCATCCTGTGGCGGCGTTTCTGGTGGGCCATCATCCTCTT < 41bp 0.527350937928859 0.738873022113105 0.18769822 0.12052074 prediction 0.423044168368492 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71909732 chr2:71909733 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_123869 0 0 0 0 2 DYSF chr2:71909660 3'AG 71909660 Downstream 74bp
chr2 71909733 71909733 1 + C T rs185617318 71909732 + 71909712 71909752 41 TTCATCCTGTGGCGGCGTTTCCGGTGGGCCATCATCCTCTT TTCATCCTGTGGCGGCGTTTCTGGTGGGCCATCATCCTCTT < 41bp 0.527350937928859 0.738873022113105 0.18769822 0.12052074 prediction 0.423044168368492 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71909732 chr2:71909733 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_123869 0 0 0 0 2 DYSF chr2:71909807 5'GT 71909807 Upstream 75bp
chr10 118380851 118380851 1 + C A UCEC 118380847 + 118380827 118380867 41 CCTTGGACCCTCGGCCTTCTCCTGCTGGCCACAGTCAGAGG CCTTGGACCCTCGGCCTTCTCCTGATGGCCACAGTCAGAGG < 41bp 0.32888921602862 0.711515903559232 0.03411752 0.09901798 prediction 0.423031807118464 Functional Gain - PNLIPRP2 ENSG00000165862 CDS Human other chr10:118380847 chr10:118380851 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_123871 0 0 0 0 2 PNLIPRP2 chr10:118380818 3'AG 118380818 Downstream 34bp
chr10 118380851 118380851 1 + C A UCEC 118380847 + 118380827 118380867 41 CCTTGGACCCTCGGCCTTCTCCTGCTGGCCACAGTCAGAGG CCTTGGACCCTCGGCCTTCTCCTGATGGCCACAGTCAGAGG < 41bp 0.32888921602862 0.711515903559232 0.03411752 0.09901798 prediction 0.423031807118464 Functional Gain - PNLIPRP2 ENSG00000165862 CDS Human other chr10:118380847 chr10:118380851 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_123871 0 0 0 0 2 PNLIPRP2 chr10:118380866 5'GT 118380866 Upstream 16bp
chr19 58048645 58048645 1 + C T READ 58048644 + 58048624 58048664 41 TGCGCAAGGAGTGTCACAGGCCAGGACTCCAAAGCTAGGTC TGCGCAAGGAGTGTCACAGGCTAGGACTCCAAAGCTAGGTC < 41bp 0.559759214608995 0.77125056272522 0.029662073 0.015897334 prediction 0.422982696232449 Functional Gain - ZNF549 ENSG00000121406 CDS Human protein_coding chr19:58048644 chr19:58048645 synonymous SNV . 0 22 hm5C_associated_SNPs_123878 0 0 1 0 1 ZNF549 chr19:58048572 3'AG 58048572 Downstream 74bp
chr6 28331573 28331573 1 + T A rs213227 28331571 + 28331551 28331591 41 GAGATGAAAAGCAGGAGAACCATGGCAGCCTGGTCTCCCTG GAGATGAAAAGCAGGAGAACCAAGGCAGCCTGGTCTCCCTG < 41bp 0.501764479404416 0.713253728468971 0.36553788 0.874401 prediction 0.42297849812911 Functional Gain - ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28331571 chr6:28331573 nonsynonymous SNV 0.756 0 23 hm5C_associated_SNPs_123881 0 0 1 0 1 ZKSCAN3 chr6:28331592 5'GT 28331592 Upstream 20bp
chr12 113624562 113624562 1 + C T LUAD 113624561 + 113624541 113624581 41 CCACAGGCAGCATGAAGACCCCCGTGGAGCTGGCCGTCAGT CCACAGGCAGCATGAAGACCCTCGTGGAGCTGGCCGTCAGT < 41bp 0.468463526937296 0.71148165370075 0.31532317 0.3824662 prediction 0.4229633074015 Functional Gain - RITA1 ENSG00000139405 CDS Human protein_coding chr12:113624561 chr12:113624562 nonsynonymous SNV 0.212 0 22 hm5C_associated_SNPs_123884 0 0 1 0 1 RITA1 chr12:113624488 3'AG 113624488 Downstream 75bp
chr1 209929603 209929603 1 + C G rs2272868 209929602 + 209929582 209929622 41 AGACCAGAGCCAAGATCTGCCCAGGACTGGAATGCTTTCCC AGACCAGAGCCAAGATCTGCCGAGGACTGGAATGCTTTCCC < 41bp 0.410004274151159 0.711468454454134 0.5846023 0.891209 prediction 0.422936908908268 Functional Gain - TRAF3IP3 ENSG00000009790 UTR5 Human protein_coding chr1:209929602 chr1:209929603 . . 0 22 hm5C_associated_SNPs_123888 0 0 0 0 1 TRAF3IP3 chr1:209929654 5'GT 209929654 Upstream 52bp
chr20 34502066 34502066 1 + C T UCEC 34502065 + 34502045 34502085 41 AGCCAGGGGTCCATATGAGCCCGCAGCTTCATGGCCCAGAA AGCCAGGGGTCCATATGAGCCTGCAGCTTCATGGCCCAGAA < 41bp 0.637975216722035 0.849441925535786 0.031671166 0.031147689 prediction 0.422933417627501 Functional Gain - PHF20 ENSG00000025293 CDS Human protein_coding chr20:34502065 chr20:34502066 nonsynonymous SNV 0.981 2 22 hm5C_associated_SNPs_123890 0 0 1 0 1 PHF20 chr20:34502119 5'GT 34502119 Upstream 54bp
chr15 41148138 41148138 1 + C T rs142750993 41148137 + 41148117 41148157 41 GACTCTGCAAGGAGAGCATCCCGCGCTGGTACTACAACCCC GACTCTGCAAGGAGAGCATCCTGCGCTGGTACTACAACCCC < 41bp 0.455254083632745 0.711460888343897 0.35710058 0.33887476 prediction 0.422921776687794 Functional Gain - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41148137 chr15:41148138 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_123891 0 0 0 0 1 SPINT1 chr15:41148090 3'AG 41148090 Downstream 49bp
chr11 65826341 65826341 1 + C T SKCM 65826340 + 65826320 65826360 41 ACCGAAAGAAGAAGAAAAAGCCCCAGCGGGTGCGAGGGGTG ACCGAAAGAAGAAGAAAAAGCTCCAGCGGGTGCGAGGGGTG < 41bp 0.644085729709098 0.855545469781163 0.41103962 0.8758652 prediction 0.422919480144129 Functional Gain - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65826340 chr11:65826341 nonsynonymous SNV 0.995 0 22 hm5C_associated_SNPs_123892 0 0 1 0 1 SF3B2 chr11:65826301 3'AG 65826301 Downstream 41bp
chr20 1896096 1896096 1 + T C UCEC 1896093 + 1896073 1896113 41 TGGAGCAGGCACTGAGCTGTCTGTGCGCGGTGAGTACAGCG TGGAGCAGGCACTGAGCTGTCTGCGCGCGGTGAGTACAGCG < 41bp 0.520718511594552 0.732177435468033 0.19605532 0.3616894 prediction 0.422917847746962 Functional Gain - SIRPA ENSG00000198053 CDS Human protein_coding chr20:1896093 chr20:1896096 nonsynonymous SNV 0.030 4 24 hm5C_associated_SNPs_123894 0 0 0 0 1 SIRPA chr20:1896101 5'GT 1896101 Upstream 6bp
chr20 21689911 21689911 1 + C T BLCA 21689910 + 21689890 21689930 41 TTTCTCCCCGCCTGCGCCTACCCGGCCTCCAACCAGCACGG TTTCTCCCCGCCTGCGCCTACTCGGCCTCCAACCAGCACGG < 41bp 0.610309270111474 0.821764301091891 0.25501058 0.3635419 prediction 0.422910061960835 Functional Gain - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21689910 chr20:21689911 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_123895 0 0 0 0 1 PAX1 chr20:21689860 3'AG 21689860 Downstream 52bp
chr20 2315830 2315830 1 + C T GBM 2315829 + 2315809 2315849 41 CTGAAGTCAGACAACATGATCCGGATCACAGCGGTGTGCAA CTGAAGTCAGACAACATGATCTGGATCACAGCGGTGTGCAA < 41bp 0.617874197628794 0.829328807571994 0.7000613 0.30269462 prediction 0.4229092198864 Functional Gain - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2315829 chr20:2315830 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_123897 0 0 0 0 2 TGM3 chr20:2315762 3'AG 2315762 Downstream 69bp
chr20 2315830 2315830 1 + C T GBM 2315829 + 2315809 2315849 41 CTGAAGTCAGACAACATGATCCGGATCACAGCGGTGTGCAA CTGAAGTCAGACAACATGATCTGGATCACAGCGGTGTGCAA < 41bp 0.617874197628794 0.829328807571994 0.7000613 0.30269462 prediction 0.4229092198864 Functional Gain - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2315829 chr20:2315830 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_123897 0 0 0 0 2 TGM3 chr20:2315919 5'GT 2315919 Upstream 90bp
chr21 47549167 47549167 1 + C T STAD 47549166 + 47549146 47549186 41 TCCTCCGCACGGAAGAGGGGCCGGACGCCACCTTCCCCAGG TCCTCCGCACGGAAGAGGGGCTGGACGCCACCTTCCCCAGG < 41bp 0.541195409361353 0.752647577583637 0.74535286 0.355021 prediction 0.422904336444569 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47549166 chr21:47549167 nonsynonymous SNV 0.976 1 22 hm5C_associated_SNPs_123898 0 0 0 0 1 COL6A2 chr21:47549110 3'AG 47549110 Downstream 58bp
chr1 142618951 142618951 1 + A G rs563828521 142618948 + 142618928 142618968 41 TGTGGGAGCAGACGCGTGGGCGCATCGCGGGCGGGCAGGGC TGTGGGAGCAGACGCGTGGGCGCGTCGCGGGCGGGCAGGGC < 41bp 0.491814758534547 0.711450954714636 0.83142257 0.8564686 prediction 0.422901909429272 Functional Gain - NONE;ANKRD20A12P ENSG00000230880 ncRNA_intronic Human other chr1:142618948 chr1:142618951 . . 0 24 hm5C_associated_SNPs_123899 0 0 0 0 1 NONE;ANKRD20A12P chr1:142618979 5'GT 142618979 Upstream 29bp
chr19 3543397 3543397 1 + C T rs12608919 3543396 + 3543376 3543416 41 GGTACAACCTGCCACGGGCCCCGGCCAGCCCCTTCCGCGAG GGTACAACCTGCCACGGGCCCTGGCCAGCCCCTTCCGCGAG < 41bp 0.559209703275577 0.770655087482367 0.24396947 0.10778004 prediction 0.42289076841358 Functional Gain - C19orf71 ENSG00000183397 CDS Human protein_coding chr19:3543396 chr19:3543397 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_123901 0 0 0 0 1 C19orf71 chr19:3543471 5'GT 3543471 Upstream 75bp
chr16 90025426 90025426 1 + C T SKCM 90025425 + 90025405 90025445 41 TGACTCACCCTCTGCAGGACCCCAATGAGGATGAGCCAAAC TGACTCACCCTCTGCAGGACCTCAATGAGGATGAGCCAAAC < 41bp 0.442662454407465 0.711437560787992 0.086814255 0.62820363 prediction 0.422875121575985 Functional Gain - DEF8 ENSG00000140995 CDS Human protein_coding chr16:90025425 chr16:90025426 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_123904 0 0 1 0 1 DEF8 chr16:90025422 3'AG 90025422 Downstream 5bp
chr17 8193136 8193136 1 + A G LUAD 8193133 + 8193113 8193153 41 CTGTTCCCCCACCCCAAGCCCTGACAACAGGTCATCTCTTG CTGTTCCCCCACCCCAAGCCCTGGCAACAGGTCATCTCTTG < 41bp 0.541768296061899 0.753185965287092 0.1272361 0.2749294 prediction 0.422835338450387 Functional Gain - RANGRF ENSG00000108961 CDS Human protein_coding chr17:8193133 chr17:8193136 stoploss 0.402 0 24 hm5C_associated_SNPs_123908 0 0 1 1 1 RANGRF chr17:8193131 3'AG 8193131 Downstream 6bp
chr5 118969733 118969733 1 + C T SKCM 118969732 + 118969712 118969752 41 AGGAACGAGGAGAGACTCCTCCCCGCTCACAACATGTCTCC AGGAACGAGGAGAGACTCCTCTCCGCTCACAACATGTCTCC < 41bp 0.606339638884162 0.817752231075594 0.11922473 0.1486808 prediction 0.422825184382865 Functional Gain - FAM170A ENSG00000164334 CDS Human protein_coding chr5:118969732 chr5:118969733 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_123911 0 0 0 0 1 FAM170A chr5:118969655 3'AG 118969655 Downstream 79bp
chr20 58381176 58381176 1 + C A LIHC 58381175 + 58381155 58381195 41 AGCAAACAGGAACTAGAAGACCGGAACATTTTCCCCAGAAG AGCAAACAGGAACTAGAAGACAGGAACATTTTCCCCAGAAG < 41bp 0.615459696764382 0.826865721006095 0.8091555 0.8665707 prediction 0.422812048483426 Functional Gain - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58381175 chr20:58381176 synonymous SNV . 0 22 hm5C_associated_SNPs_123914 0 0 0 0 2 PHACTR3 chr20:58381096 3'AG 58381096 Downstream 81bp
chr20 58381176 58381176 1 + C A LIHC 58381175 + 58381155 58381195 41 AGCAAACAGGAACTAGAAGACCGGAACATTTTCCCCAGAAG AGCAAACAGGAACTAGAAGACAGGAACATTTTCCCCAGAAG < 41bp 0.615459696764382 0.826865721006095 0.8091555 0.8665707 prediction 0.422812048483426 Functional Gain - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58381175 chr20:58381176 synonymous SNV . 0 22 hm5C_associated_SNPs_123914 0 0 0 0 2 PHACTR3 chr20:58381249 5'GT 58381249 Upstream 74bp
chr17 4799092 4799092 1 + T C LGG 4799090 + 4799070 4799110 41 AAGAAGCAGGGCTGGACCACCGTGGGGGACATGGAGGGCTG AAGAAGCAGGGCTGGACCACCGCGGGGGACATGGAGGGCTG < 41bp 0.632951523322742 0.84433788610288 0.8710104 0.91174 prediction 0.422772725560276 Functional Gain - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799090 chr17:4799092 nonsynonymous SNV 0.977 4 23 hm5C_associated_SNPs_123924 0 0 1 0 2 MINK1 chr17:4798993 3'AG 4798993 Downstream 100bp
chr17 4799092 4799092 1 + T C LGG 4799090 + 4799070 4799110 41 AAGAAGCAGGGCTGGACCACCGTGGGGGACATGGAGGGCTG AAGAAGCAGGGCTGGACCACCGCGGGGGACATGGAGGGCTG < 41bp 0.632951523322742 0.84433788610288 0.8710104 0.91174 prediction 0.422772725560276 Functional Gain - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799090 chr17:4799092 nonsynonymous SNV 0.977 4 23 hm5C_associated_SNPs_123924 0 0 1 0 2 MINK1 chr17:4799127 5'GT 4799127 Upstream 36bp
chr1 152648513 152648513 1 + C A LUSC 152648509 + 152648489 152648529 41 AGCATGTCTTGCCAGCAAAACCAGCAGCAGTGCCAGCCCCC AGCATGTCTTGCCAGCAAAACCAGAAGCAGTGCCAGCCCCC < 41bp 0.315058074974559 0.711378098539405 0.40356466 0.66695035 prediction 0.422756197078811 Functional Gain - LCE2C ENSG00000187180 CDS Human protein_coding chr1:152648509 chr1:152648513 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_123927 0 0 0 0 1 LCE2C chr1:152648471 3'AG 152648471 Downstream 43bp
chr7 6441629 6441629 1 + C T SKCM 6441628 + 6441608 6441648 41 AGCTGACTCCCATCACCTATCCGCAGGGTCTAGCCATGGCT AGCTGACTCCCATCACCTATCTGCAGGGTCTAGCCATGGCT < 41bp 0.642442034458558 0.853817183560021 0.35894826 0.23508728 prediction 0.422750298202927 Functional Gain - RAC1 ENSG00000136238 CDS Human protein_coding chr7:6441628 chr7:6441629 nonsynonymous SNV 0.682 1 22 hm5C_associated_SNPs_123928 0 0 1 0 1 RAC1 chr7:6441658 5'GT 6441658 Upstream 30bp
chr1 18149520 18149520 1 + T C GBM 18149518 + 18149498 18149538 41 TCCGCCATGGCTGCAAGAACCGTTATCATTGACCACGGGTC TCCGCCATGGCTGCAAGAACCGCTATCATTGACCACGGGTC < 41bp 0.434535499320211 0.711374554488651 0.15523362 0.23512542 prediction 0.422749108977303 Functional Gain - ACTL8 ENSG00000117148 CDS Human protein_coding chr1:18149518 chr1:18149520 nonsynonymous SNV 0.304 2 23 hm5C_associated_SNPs_123929 0 0 0 0 1 ACTL8 chr1:18149480 3'AG 18149480 Downstream 41bp
chr8 2044184 2044184 1 + C A SARC 2044180 + 2044160 2044200 41 CCCGAAATTCAGTGGTGGCTCGCCCATCCTGGGCTACTACC CCCGAAATTCAGTGGTGGCTCGCCAATCCTGGGCTACTACC < 41bp 0.273013911236082 0.711372545729307 0.20062649 0.88688403 prediction 0.422745091458613 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2044180 chr8:2044184 synonymous SNV . 0 25 hm5C_associated_SNPs_123932 0 0 0 0 2 MYOM2 chr8:2044087 3'AG 2044087 Downstream 98bp
chr8 2044184 2044184 1 + C A SARC 2044180 + 2044160 2044200 41 CCCGAAATTCAGTGGTGGCTCGCCCATCCTGGGCTACTACC CCCGAAATTCAGTGGTGGCTCGCCAATCCTGGGCTACTACC < 41bp 0.273013911236082 0.711372545729307 0.20062649 0.88688403 prediction 0.422745091458613 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2044180 chr8:2044184 synonymous SNV . 0 25 hm5C_associated_SNPs_123932 0 0 0 0 2 MYOM2 chr8:2044274 5'GT 2044274 Upstream 91bp
chr4 24801223 24801223 1 + C T DLBC 24801222 + 24801202 24801242 41 CGGGCGAGGACTCGGCGGAGCCCAACTCTGACTCGGCGGAG CGGGCGAGGACTCGGCGGAGCTCAACTCTGACTCGGCGGAG < 41bp 0.554495641942771 0.7658538303781 0.29771984 0.3934071 prediction 0.422716376870659 Functional Gain - SOD3 ENSG00000109610 CDS Human protein_coding chr4:24801222 chr4:24801223 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_123938 0 0 0 0 1 SOD3 chr4:24801128 3'AG 24801128 Downstream 96bp
chr1 22986051 22986051 1 + C A LUAD 22986050 + 22986030 22986070 41 CCAGCTCAGCTGCACCGGGCCCCCAGCCATCCCTGGCATCC CCAGCTCAGCTGCACCGGGCCACCAGCCATCCCTGGCATCC < 41bp 0.614155184456838 0.825511039614327 0.10648367 0.17614952 prediction 0.422711710314979 Functional Gain - C1QB ENSG00000173369 CDS Human protein_coding chr1:22986050 chr1:22986051 synonymous SNV . 0 22 hm5C_associated_SNPs_123943 0 0 0 0 1 C1QB chr1:22986136 5'GT 22986136 Upstream 86bp
chr1 17597607 17597607 1 + C T PCPG 17597606 + 17597586 17597626 41 GGATGCGGTGGCAGAGCTGGCCAGGAAGGCCGGCTGCAAGC GGATGCGGTGGCAGAGCTGGCTAGGAAGGCCGGCTGCAAGC < 41bp 0.594297995038571 0.805647695113815 0.8781285 0.5777997 prediction 0.422699400150488 Functional Gain - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17597606 chr1:17597607 synonymous SNV . 0 22 hm5C_associated_SNPs_123946 0 0 0 0 1 PADI3 chr1:17597673 5'GT 17597673 Upstream 67bp
chr17 12847434 12847434 1 + T G PRAD 12847430 + 12847410 12847450 41 TCGGGAAGCCGCTGGAGGAGCACCTCACCATCAGCGGCCGG TCGGGAAGCCGCTGGAGGAGCACCGCACCATCAGCGGCCGG < 41bp 0.532384834134654 0.743730035129989 0.23636478 0.27705505 prediction 0.422690401990669 Functional Gain - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12847430 chr17:12847434 nonsynonymous SNV 0.924 4 25 hm5C_associated_SNPs_123947 0 0 1 0 1 ARHGAP44 chr17:12847513 5'GT 12847513 Upstream 80bp
chr12 101711394 101711394 1 + C T COAD 101711393 + 101711373 101711413 41 GTTGGAGGAAGAGGCAGTGCCCCAAGATGAATCCTCACAGA GTTGGAGGAAGAGGCAGTGCCTCAAGATGAATCCTCACAGA < 41bp 0.462862984443482 0.711344753117562 0.1794292 0.5819185 prediction 0.422689506235123 Functional Gain - UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711393 chr12:101711394 synonymous SNV . 0 22 hm5C_associated_SNPs_123948 0 0 1 0 1 UTP20 chr12:101711441 5'GT 101711441 Upstream 48bp
chr6 139186159 139186159 1 + T C rs79294486 139186156 + 139186136 139186176 41 TTAGTGATTGGCTGGGATCCCAATGGGGAAAGGCCCCCTCT TTAGTGATTGGCTGGGATCCCAACGGGGAAAGGCCCCCTCT < 41bp 0.498141016477394 0.711340359599836 0.8282318 0.69993496 prediction 0.422680719199672 Functional Gain - ECT2L ENSG00000203734 CDS Human protein_coding chr6:139186156 chr6:139186159 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_123950 0 0 0 0 1 ECT2L chr6:139186133 3'AG 139186133 Downstream 27bp
chr8 11222416 11222416 1 + C T rs140376832 11222415 + 11222395 11222435 41 CAGCGCCATGAGCTTCACACCCGAGGAGCTGGCCCAGGAGG CAGCGCCATGAGCTTCACACCTGAGGAGCTGGCCCAGGAGG < 41bp 0.563684381503747 0.775022048777559 0.12388158 0.14232296 prediction 0.422675334547625 Functional Gain - TDH ENSG00000154316 ncRNA_exonic Human transcribed_unitary_pseudogene chr8:11222415 chr8:11222416 . . 0 22 hm5C_associated_SNPs_123951 0 0 0 0 1 TDH chr8:11222498 5'GT 11222498 Upstream 83bp
chr5 176295797 176295797 1 + C T UCEC 176295796 + 176295776 176295816 41 CTCCCCTAGGTGGAGTGGCTCCGGAACGAGGACCTGGTGGA CTCCCCTAGGTGGAGTGGCTCTGGAACGAGGACCTGGTGGA < 41bp 0.608067538539906 0.819400453897072 0.91186297 0.8897127 prediction 0.422665830714333 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176295796 chr5:176295797 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_123953 0 0 0 0 1 UNC5A chr5:176295785 3'AG 176295785 Downstream 13bp
chr1 10041122 10041122 1 + T C UCEC 10041119 + 10041099 10041139 41 GAGAAATTGGAGGCTAGTGACTGTGATCACCAGCAGAACTC GAGAAATTGGAGGCTAGTGACTGCGATCACCAGCAGAACTC < 41bp 0.530974007503479 0.742306588074842 0.04108727 0.04820028 prediction 0.422665161142727 Functional Gain - NMNAT1 ENSG00000173614 CDS Human protein_coding chr1:10041119 chr1:10041122 synonymous SNV . 0 24 hm5C_associated_SNPs_123954 0 0 1 0 1 NMNAT1 chr1:10041089 3'AG 10041089 Downstream 34bp
chr4 39276469 39276469 1 + A G UCEC 39276466 + 39276446 39276486 41 CGTCAACTGTGATTGAGTGTCACAGGGCAGGCCTGAAGAAC CGTCAACTGTGATTGAGTGTCACGGGGCAGGCCTGAAGAAC < 41bp 0.575781944535101 0.787113215520993 0.23907673 0.2789543 prediction 0.422662541971784 Functional Gain - WDR19 ENSG00000157796 CDS Human protein_coding chr4:39276466 chr4:39276469 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_123955 0 0 1 0 1 WDR19 chr4:39276428 3'AG 39276428 Downstream 42bp
chr17 4847922 4847922 1 + C T GBM 4847921 + 4847901 4847941 41 GGGACAAGCTGCGGGTACTCCCCTGTGCTCATGGTGAGGCC GGGACAAGCTGCGGGTACTCCTCTGTGCTCATGGTGAGGCC < 41bp 0.439272507129772 0.711329290099423 0.06350586 0.12817454 prediction 0.422658580198845 Functional Gain - RNF167 ENSG00000108523 CDS Human protein_coding chr17:4847921 chr17:4847922 nonsynonymous SNV 0.950 4 22 hm5C_associated_SNPs_123956 0 0 1 0 3 RNF167 chr17:4847853 3'AG 4847853 Downstream 70bp
chr17 4847922 4847922 1 + C T GBM 4847921 + 4847901 4847941 41 GGGACAAGCTGCGGGTACTCCCCTGTGCTCATGGTGAGGCC GGGACAAGCTGCGGGTACTCCTCTGTGCTCATGGTGAGGCC < 41bp 0.439272507129772 0.711329290099423 0.06350586 0.12817454 prediction 0.422658580198845 Functional Gain - RNF167 ENSG00000108523 CDS Human protein_coding chr17:4847921 chr17:4847922 nonsynonymous SNV 0.950 4 22 hm5C_associated_SNPs_123956 0 0 1 0 3 RNF167 chr17:4847856 3'AG 4847856 Downstream 67bp
chr17 4847922 4847922 1 + C T GBM 4847921 + 4847901 4847941 41 GGGACAAGCTGCGGGTACTCCCCTGTGCTCATGGTGAGGCC GGGACAAGCTGCGGGTACTCCTCTGTGCTCATGGTGAGGCC < 41bp 0.439272507129772 0.711329290099423 0.06350586 0.12817454 prediction 0.422658580198845 Functional Gain - RNF167 ENSG00000108523 CDS Human protein_coding chr17:4847921 chr17:4847922 nonsynonymous SNV 0.950 4 22 hm5C_associated_SNPs_123956 0 0 1 0 3 RNF167 chr17:4847933 5'GT 4847933 Upstream 12bp
chr19 11024598 11024598 1 + C T SKCM 11024597 + 11024577 11024617 41 ACGGACCGCATCGTGGTCATCCCGGGCAAGGTGGAGGAGGT ACGGACCGCATCGTGGTCATCTCGGGCAAGGTGGAGGAGGT < 41bp 0.618019377493518 0.82934816624951 0.57981247 0.6204298 prediction 0.422657577511984 Functional Gain - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11024597 chr19:11024598 nonsynonymous SNV 0.839 1 22 hm5C_associated_SNPs_123957 0 0 1 0 1 CARM1 chr19:11024553 3'AG 11024553 Downstream 46bp
chrX 15706889 15706889 1 + T G rs186512616 15706886 + 15706866 15706906 41 TTATGATCCCGGCTTAAAACCACTGACCATCTCTTATGACC TTATGATCCCGGCTTAAAACCACGGACCATCTCTTATGACC < 41bp 0.401726634534677 0.711326926351414 0.24113154 0.6127176 prediction 0.422653852702828 Functional Gain - CA5BP1 ENSG00000186312 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:15706886 chrX:15706889 . . 0 24 hm5C_associated_SNPs_123959 0 0 0 0 1 CA5BP1 chrX:15706981 5'GT 15706981 Upstream 93bp
chr19 56688494 56688494 1 + T C LUSC 56688492 + 56688472 56688512 41 CCTTCGATGGCTCCTCCCTCCGTCCCCCTGGTCCTCCTCCT CCTTCGATGGCTCCTCCCTCCGCCCCCCTGGTCCTCCTCCT < 41bp 0.450448629043695 0.711321501795459 0.2404916 0.26761982 prediction 0.422643003590919 Functional Gain - GALP ENSG00000197487 CDS Human protein_coding chr19:56688492 chr19:56688494 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_123961 0 0 0 0 1 GALP chr19:56688564 5'GT 56688564 Upstream 71bp
chr7 56022693 56022693 1 + C T KIRC 56022692 + 56022672 56022712 41 TTCTCAGAGCTTTACCTGTTCCACGAGCAAAGCATGTGAAA TTCTCAGAGCTTTACCTGTTCTACGAGCAAAGCATGTGAAA < 41bp 0.469692322366421 0.71131740388268 0.04015869 0.046457827 prediction 0.422634807765361 Functional Gain - MRPS17 ENSG00000239789;ENSG00000249773 CDS Human other chr7:56022692 chr7:56022693 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_123963 0 0 1 0 1 MRPS17 chr7:56022602 3'AG 56022602 Downstream 92bp
chr3 38045762 38045762 1 + C T LUSC 38045761 + 38045741 38045781 41 GCCAGGCTCCCTGAGGAGGTCCCCAGCTTCCAGCCACGACT GCCAGGCTCCCTGAGGAGGTCTCCAGCTTCCAGCCACGACT < 41bp 0.437076779755053 0.711315770282494 0.42893535 0.9268153 prediction 0.422631540564988 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38045761 chr3:38045762 nonsynonymous SNV 0.020 0 22 hm5C_associated_SNPs_123966 0 0 1 0 1 VILL chr3:38045746 3'AG 38045746 Downstream 17bp
chr1 119929320 119929320 1 + A G UCEC 119929317 + 119929297 119929337 41 GGAATGATCTCTCCTGGTTTCAGAGCATAACTCGATTGCCC GGAATGATCTCTCCTGGTTTCAGGGCATAACTCGATTGCCC < 41bp 0.587596004278354 0.798910924482771 0.758937 0.8702998 prediction 0.422629840408835 Functional Gain - HAO2 ENSG00000116882 CDS Human protein_coding chr1:119929317 chr1:119929320 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_123967 0 0 0 0 1 HAO2 chr1:119929245 3'AG 119929245 Downstream 76bp
chr16 1748827 1748827 1 + C T UCEC 1748826 + 1748806 1748846 41 CCACAGCTGCAAGGAGCATCCCGGCTGGAGCAGAGCCAGGT CCACAGCTGCAAGGAGCATCCTGGCTGGAGCAGAGCCAGGT < 41bp 0.580294423130461 0.791607092575753 0.6278088 0.35556325 prediction 0.422625338890583 Functional Gain - JPT2 ENSG00000206053 CDS Human protein_coding chr16:1748826 chr16:1748827 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_123968 0 0 1 0 1 JPT2 chr16:1748812 3'AG 1748812 Downstream 16bp
chr12 108104210 108104210 1 + C G UCEC 108104209 + 108104189 108104229 41 TCTTCTGTTCTTCATGTTGCCCTGATTTGCCATTTATTTAT TCTTCTGTTCTTCATGTTGCCGTGATTTGCCATTTATTTAT < 41bp 0.402274170564339 0.711309285909278 0.026089698 0.3892907 prediction 0.422618571818556 Functional Gain - PWP1 ENSG00000136045 CDS Human protein_coding chr12:108104209 chr12:108104210 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_123970 0 0 1 0 2 PWP1 chr12:108104182 3'AG 108104182 Downstream 29bp
chr12 108104210 108104210 1 + C G UCEC 108104209 + 108104189 108104229 41 TCTTCTGTTCTTCATGTTGCCCTGATTTGCCATTTATTTAT TCTTCTGTTCTTCATGTTGCCGTGATTTGCCATTTATTTAT < 41bp 0.402274170564339 0.711309285909278 0.026089698 0.3892907 prediction 0.422618571818556 Functional Gain - PWP1 ENSG00000136045 CDS Human protein_coding chr12:108104209 chr12:108104210 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_123970 0 0 1 0 2 PWP1 chr12:108104287 5'GT 108104287 Upstream 78bp
chr2 73430121 73430121 1 + T C rs148083845 73430119 + 73430099 73430139 41 ACCTGAGCGTAGGTTTTTACCCTGTGCCAGGGCCGCGCGTG ACCTGAGCGTAGGTTTTTACCCCGTGCCAGGGCCGCGCGTG < 41bp 0.542434382856216 0.753742047496518 0.13055065 0.26748103 prediction 0.422615329280603 Functional Gain - NOTO ENSG00000214513 CDS Human protein_coding chr2:73430119 chr2:73430121 synonymous SNV . 0 23 hm5C_associated_SNPs_123971 0 0 0 0 1 NOTO chr2:73430176 5'GT 73430176 Upstream 56bp
chr10 44102475 44102475 1 + C G rs186145794 44102474 + 44102454 44102494 41 CGCAGGATTCTCAGCCCTTGCCTGGGAGAACAGTTCAGGAG CGCAGGATTCTCAGCCCTTGCGTGGGAGAACAGTTCAGGAG < 41bp 0.473587874375277 0.711306621841319 0.4397138 0.7804314 prediction 0.422613243682637 Functional Gain - ZNF485 ENSG00000198298 UTR5 Human protein_coding chr10:44102474 chr10:44102475 . . 0 22 hm5C_associated_SNPs_123972 0 0 0 0 1 ZNF485 chr10:44102445 3'AG 44102445 Downstream 31bp
chr17 38319029 38319029 1 + T C rs148913545 38319027 + 38319007 38319047 41 AGGATGAGGGTCGCTGGGAGCATGACAAGTTCCGGGAAGAT AGGATGAGGGTCGCTGGGAGCACGACAAGTTCCGGGAAGAT < 41bp 0.65867755521013 0.869982309616992 0.6221391 0.68453246 prediction 0.422609508813723 Functional Gain - CASC3 ENSG00000108349 CDS Human protein_coding chr17:38319027 chr17:38319029 synonymous SNV . 0 23 hm5C_associated_SNPs_123973 0 0 1 0 1 CASC3 chr17:38318978 3'AG 38318978 Downstream 52bp
chr14 23235926 23235926 1 + A G LUAD 23235923 + 23235903 23235943 41 CGGGCAAAATGGCGATGGGACTAATGTGCGGACGCCGGGAG CGGGCAAAATGGCGATGGGACTAGTGTGCGGACGCCGGGAG < 41bp 0.604402872626982 0.815703536075113 0.43570468 0.5598987 prediction 0.422601326896262 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23235923 chr14:23235926 nonsynonymous SNV 0.017 0 24 hm5C_associated_SNPs_123977 0 0 1 0 1 OXA1L chr14:23235973 5'GT 23235973 Upstream 48bp
chr3 50150955 50150955 1 + C T COAD 50150954 + 50150934 50150974 41 GGAAAGAGAAGAAGGAGAAACCCAAGAGCAAAACAGCCCAG GGAAAGAGAAGAAGGAGAAACTCAAGAGCAAAACAGCCCAG < 41bp 0.626860779728819 0.838158716442055 0.31456897 0.54882085 prediction 0.422595873426472 Functional Gain - RBM5 ENSG00000003756 CDS Human protein_coding chr3:50150954 chr3:50150955 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_123978 0 0 1 0 1 RBM5 chr3:50150977 5'GT 50150977 Upstream 23bp
chr10 131565067 131565067 1 + C T SKCM 131565066 + 131565046 131565086 41 TTCCAGGTCCCCATCCTCATCCCGTGCCACAGAGTGGTCTG TTCCAGGTCCCCATCCTCATCTCGTGCCACAGAGTGGTCTG < 41bp 0.581347528385625 0.792635067445055 0.09520471 0.1416679 prediction 0.422575078118862 Functional Gain - MGMT ENSG00000170430 CDS Human protein_coding chr10:131565066 chr10:131565067 nonsynonymous SNV 0.854 4 22 hm5C_associated_SNPs_123982 0 0 0 0 1 MGMT chr10:131565052 3'AG 131565052 Downstream 16bp
chr15 41102153 41102153 1 + C T GBM 41102152 + 41102132 41102172 41 GAGCGCCTAGCACGACTCCGCCAGGAGAACAAGCCCAGTGA GAGCGCCTAGCACGACTCCGCTAGGAGAACAAGCCCAGTGA < 41bp 0.606887373878805 0.81817478162678 0.90816426 0.72927415 prediction 0.422574815495951 Functional Gain - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41102152 chr15:41102153 stopgain 0.994 1 22 hm5C_associated_SNPs_123983 0 0 0 0 1 ZFYVE19 chr15:41102168 5'GT 41102168 Upstream 16bp
chr11 94861564 94861564 1 + T C UCEC 94861562 + 94861542 94861582 41 TCGATGACCCCAACAGCAACCTTGAGGAGGCGATTAATGAG TCGATGACCCCAACAGCAACCTCGAGGAGGCGATTAATGAG < 41bp 0.65204709648346 0.863334493988881 0.062048167 0.14679801 prediction 0.422574795010842 Functional Gain - ENDOD1 ENSG00000149218 CDS Human protein_coding chr11:94861562 chr11:94861564 synonymous SNV . 0 23 hm5C_associated_SNPs_123984 0 0 0 0 1 ENDOD1 chr11:94861541 3'AG 94861541 Downstream 24bp
chr8 92212952 92212952 1 + T C UCEC 92212950 + 92212930 92212970 41 CATGATCTCTCAGGGAAAAACATGTGCAATATGTGGACAGT CATGATCTCTCAGGGAAAAACACGTGCAATATGTGGACAGT < 41bp 0.430673024537902 0.711278475021804 0.22477293 0.33462095 prediction 0.422556950043608 Functional Gain - LRRC69 ENSG00000214954 CDS Human protein_coding chr8:92212950 chr8:92212952 nonsynonymous SNV 0.125 3 23 hm5C_associated_SNPs_123993 0 0 0 0 1 LRRC69 chr8:92213020 5'GT 92213020 Upstream 69bp
chr16 77918652 77918652 1 + C A BLCA 77918651 + 77918631 77918671 41 AAACTCATAGGGCTCTACAACCAGAAGAAGATCAAGCCTGT AAACTCATAGGGCTCTACAACAAGAAGAAGATCAAGCCTGT < 41bp 0.620357800580289 0.831634251447904 0.8340992 0.83676744 prediction 0.422552901735229 Functional Gain - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77918651 chr16:77918652 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_123994 0 0 0 0 1 VAT1L chr16:77918699 5'GT 77918699 Upstream 48bp
chr17 73258940 73258940 1 + A G UCEC 73258937 + 73258917 73258957 41 ACAAAGTACTGGCCAGATCCCTCATGATTCAGGTAAACAGC ACAAAGTACTGGCCAGATCCCTCGTGATTCAGGTAAACAGC < 41bp 0.468859271690883 0.711274564015249 0.056044012 0.046189785 prediction 0.422549128030499 Functional Gain - MRPS7 ENSG00000125445 CDS Human protein_coding chr17:73258937 chr17:73258940 nonsynonymous SNV 0.516 0 24 hm5C_associated_SNPs_123995 0 0 1 0 2 MRPS7 chr17:73258885 3'AG 73258885 Downstream 56bp
chr17 73258940 73258940 1 + A G UCEC 73258937 + 73258917 73258957 41 ACAAAGTACTGGCCAGATCCCTCATGATTCAGGTAAACAGC ACAAAGTACTGGCCAGATCCCTCGTGATTCAGGTAAACAGC < 41bp 0.468859271690883 0.711274564015249 0.056044012 0.046189785 prediction 0.422549128030499 Functional Gain - MRPS7 ENSG00000125445 CDS Human protein_coding chr17:73258937 chr17:73258940 nonsynonymous SNV 0.516 0 24 hm5C_associated_SNPs_123995 0 0 1 0 2 MRPS7 chr17:73258948 5'GT 73258948 Upstream 9bp
chr2 203242243 203242243 1 + T C STAD 203242241 + 203242221 203242261 41 CTGGCGGGTGCCCTGGCTACCATGGACCATCCTGCTGGTCA CTGGCGGGTGCCCTGGCTACCACGGACCATCCTGCTGGTCA < 41bp 0.572016462255041 0.783285154487205 0.7427785 0.7259848 prediction 0.422537384464329 Functional Gain - BMPR2 ENSG00000204217 CDS Human protein_coding chr2:203242241 chr2:203242243 nonsynonymous SNV 0.486 1 23 hm5C_associated_SNPs_123997 0 0 1 0 1 BMPR2 chr2:203242273 5'GT 203242273 Upstream 31bp
chr4 129776873 129776873 1 + C T COAD 129776872 + 129776852 129776892 41 AGCCAAAATGTCTGCTGTGTCCGAAGAAGGGTGGAGCTATG AGCCAAAATGTCTGCTGTGTCTGAAGAAGGGTGGAGCTATG < 41bp 0.61800847740795 0.829272591853581 0.21476102 0.14993298 prediction 0.422528228891262 Functional Gain - JADE1 ENSG00000077684 CDS Human protein_coding chr4:129776872 chr4:129776873 nonsynonymous SNV 0.994 5 22 hm5C_associated_SNPs_123999 0 0 1 0 2 JADE1 chr4:129776785 3'AG 129776785 Downstream 89bp
chr4 129776873 129776873 1 + C T COAD 129776872 + 129776852 129776892 41 AGCCAAAATGTCTGCTGTGTCCGAAGAAGGGTGGAGCTATG AGCCAAAATGTCTGCTGTGTCTGAAGAAGGGTGGAGCTATG < 41bp 0.61800847740795 0.829272591853581 0.21476102 0.14993298 prediction 0.422528228891262 Functional Gain - JADE1 ENSG00000077684 CDS Human protein_coding chr4:129776872 chr4:129776873 nonsynonymous SNV 0.994 5 22 hm5C_associated_SNPs_123999 0 0 1 0 2 JADE1 chr4:129776952 5'GT 129776952 Upstream 80bp
chr3 12869032 12869032 1 + C A STAD 12869028 + 12869008 12869048 41 ATGTATTCACTGCTTGAGAGCTGCCTGGGCCAGCTGGATAT ATGTATTCACTGCTTGAGAGCTGCATGGGCCAGCTGGATAT < 41bp 0.283995745381241 0.711262382937207 0.1836322 0.24295157 prediction 0.422524765874415 Functional Gain - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12869028 chr3:12869032 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_124000 0 0 1 0 2 CAND2 chr3:12868939 3'AG 12868939 Downstream 94bp
chr3 12869032 12869032 1 + C A STAD 12869028 + 12869008 12869048 41 ATGTATTCACTGCTTGAGAGCTGCCTGGGCCAGCTGGATAT ATGTATTCACTGCTTGAGAGCTGCATGGGCCAGCTGGATAT < 41bp 0.283995745381241 0.711262382937207 0.1836322 0.24295157 prediction 0.422524765874415 Functional Gain - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12869028 chr3:12869032 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_124000 0 0 1 0 2 CAND2 chr3:12869103 5'GT 12869103 Upstream 72bp
chr14 73538420 73538420 1 + C T COAD 73538419 + 73538399 73538439 41 TCCCACCAGGGATCCCACCCCCGCAGTTTCCAGGATTTCCT TCCCACCAGGGATCCCACCCCTGCAGTTTCCAGGATTTCCT < 41bp 0.639147517693845 0.850407387336636 0.21517721 0.33602518 prediction 0.422519739285581 Functional Gain - RBM25 ENSG00000119707 CDS Human protein_coding chr14:73538419 chr14:73538420 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_124001 0 0 1 0 1 RBM25 chr14:73538455 5'GT 73538455 Upstream 36bp
chr2 75101560 75101560 1 + A G UCEC 75101557 + 75101537 75101577 41 AGGAGATTGACATGGGCTCACTGAACCCGGGAAAGCAACTG AGGAGATTGACATGGGCTCACTGGACCCGGGAAAGCAACTG < 41bp 0.597467949762543 0.80872458256178 0.3161953 0.424251 prediction 0.422513265598474 Functional Gain - HK2 ENSG00000159399 CDS Human protein_coding chr2:75101557 chr2:75101560 nonsynonymous SNV 0.922 5 24 hm5C_associated_SNPs_124002 0 0 1 0 1 HK2 chr2:75101576 5'GT 75101576 Upstream 17bp
chr20 61461754 61461754 1 + C T COAD 61461753 + 61461733 61461773 41 CCTCCCGGAGCCCCTGGTGTCCGAGGCTTCCAGGTGGGTGA CCTCCCGGAGCCCCTGGTGTCTGAGGCTTCCAGGTGGGTGA < 41bp 0.547716543472283 0.758972697378914 0.9036808 0.8473871 prediction 0.422512307813262 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61461753 chr20:61461754 stopgain 0.227 1 22 hm5C_associated_SNPs_124003 0 0 1 0 2 COL9A3 chr20:61461712 3'AG 61461712 Downstream 43bp
chr20 61461754 61461754 1 + C T COAD 61461753 + 61461733 61461773 41 CCTCCCGGAGCCCCTGGTGTCCGAGGCTTCCAGGTGGGTGA CCTCCCGGAGCCCCTGGTGTCTGAGGCTTCCAGGTGGGTGA < 41bp 0.547716543472283 0.758972697378914 0.9036808 0.8473871 prediction 0.422512307813262 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61461753 chr20:61461754 stopgain 0.227 1 22 hm5C_associated_SNPs_124003 0 0 1 0 2 COL9A3 chr20:61461765 5'GT 61461765 Upstream 12bp
chr11 48185143 48185143 1 + C T SKCM 48185142 + 48185122 48185162 41 ACTACATGAAGCAGAGTCCTCCCGAATCGCCGATTCTGGTG ACTACATGAAGCAGAGTCCTCTCGAATCGCCGATTCTGGTG < 41bp 0.628282147265273 0.83953781484667 0.14915511 0.9389178 prediction 0.422511335162794 Functional Gain - PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48185142 chr11:48185143 nonsynonymous SNV 0.269 1 22 hm5C_associated_SNPs_124004 0 0 0 0 1 PTPRJ chr11:48185170 5'GT 48185170 Upstream 28bp
chr16 313303 313303 1 + C T BLCA 313302 + 313282 313322 41 GATGCATGTCCCAGGGAACGCCGGTGCAGATGTGCTTCTTG GATGCATGTCCCAGGGAACGCTGGTGCAGATGTGCTTCTTG < 41bp 0.481874740446756 0.71125557152956 0.28740555 0.28685552 prediction 0.42251114305912 Functional Gain - FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:313302 chr16:313303 synonymous SNV . 0 22 hm5C_associated_SNPs_124005 0 0 1 0 1 FAM234A chr16:313261 3'AG 313261 Downstream 43bp
chr3 148563303 148563303 1 + C T COAD 148563302 + 148563282 148563322 41 AAGGCCCTGGCTGATTTCATCCGCAACAAACTCTCTTCCAT AAGGCCCTGGCTGATTTCATCTGCAACAAACTCTCTTCCAT < 41bp 0.622753745597042 0.834007757101328 0.2656994 0.290984 prediction 0.422508023008573 Functional Gain - CPB1 ENSG00000153002 CDS Human protein_coding chr3:148563302 chr3:148563303 nonsynonymous SNV 0.937 4 22 hm5C_associated_SNPs_124006 0 0 0 0 1 CPB1 chr3:148563211 3'AG 148563211 Downstream 93bp
chr19 14574764 14574764 1 + C T rs139622328 14574763 + 14574743 14574783 41 CCCTGGGGCTTCTCCAGGATCCGAGGCCCGGACCACGGGGT CCCTGGGGCTTCTCCAGGATCTGAGGCCCGGACCACGGGGT < 41bp 0.471476782457309 0.71125200625504 0.9129641 0.85939896 prediction 0.422504012510081 Functional Gain - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574763 chr19:14574764 synonymous SNV . 0 22 hm5C_associated_SNPs_124008 0 0 1 0 1 PKN1 chr19:14574781 5'GT 14574781 Upstream 18bp
chr9 139815663 139815663 1 + C T SKCM 139815662 + 139815642 139815682 41 CCGCATACCCGCCATCTTCTCCCCAGGTGTGGTTCTAGGAC CCGCATACCCGCCATCTTCTCTCCAGGTGTGGTTCTAGGAC < 41bp 0.643516043165817 0.854762887342397 0.33023593 0.94451094 prediction 0.422493688353159 Functional Gain - TRAF2 ENSG00000127191 CDS Human protein_coding chr9:139815662 chr9:139815663 synonymous SNV . 0 22 hm5C_associated_SNPs_124009 0 0 0 0 1 TRAF2 chr9:139815667 5'GT 139815667 Upstream 5bp
chr3 197707271 197707271 1 + T G STAD 197707267 + 197707247 197707287 41 GCCAGACCAAGAAGGCATCTCAGATGCAGACTTTGTTCTTT GCCAGACCAAGAAGGCATCTCAGAGGCAGACTTTGTTCTTT < 41bp 0.50118248988563 0.712424686321197 0.45347145 0.90520847 prediction 0.422484392871134 Functional Gain - LMLN ENSG00000185621 CDS Human protein_coding chr3:197707267 chr3:197707271 nonsynonymous SNV 0.880 1 25 hm5C_associated_SNPs_124010 0 0 1 0 1 LMLN chr3:197707197 3'AG 197707197 Downstream 75bp
chr6 161152206 161152206 1 + T A rs116573785 161152202 + 161152182 161152222 41 AAAATGCTCAGGAACAGAAGCGAGTGTTGTAGCACCTCCGC AAAATGCTCAGGAACAGAAGCGAGAGTTGTAGCACCTCCGC < 41bp 0.685933410170465 0.897175213566458 0.9027923 0.9222084 prediction 0.422483606791987 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161152202 chr6:161152206 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_124011 0 0 0 0 1 PLG chr6:161152264 5'GT 161152264 Upstream 59bp
chr7 73455553 73455553 1 + A G COAD 73455550 + 73455530 73455570 41 TGTTTCTTATCCACAGTTCCCGGAGGGCTTGCGGGTGCTGG TGTTTCTTATCCACAGTTCCCGGGGGGCTTGCGGGTGCTGG < 41bp 0.492974242765674 0.711227786506185 0.9160824 0.93936276 prediction 0.42245557301237 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73455550 chr7:73455553 synonymous SNV . 0 24 hm5C_associated_SNPs_124013 0 0 0 0 2 ELN chr7:73455546 3'AG 73455546 Downstream 8bp
chr7 73455553 73455553 1 + A G COAD 73455550 + 73455530 73455570 41 TGTTTCTTATCCACAGTTCCCGGAGGGCTTGCGGGTGCTGG TGTTTCTTATCCACAGTTCCCGGGGGGCTTGCGGGTGCTGG < 41bp 0.492974242765674 0.711227786506185 0.9160824 0.93936276 prediction 0.42245557301237 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73455550 chr7:73455553 synonymous SNV . 0 24 hm5C_associated_SNPs_124013 0 0 0 0 2 ELN chr7:73455581 5'GT 73455581 Upstream 29bp
chr12 69656301 69656301 1 + C T HNSC 69656300 + 69656280 69656320 41 GATCGTGACCGAGACCGTGACCGAGAGCGTGACCGAGAGCG GATCGTGACCGAGACCGTGACTGAGAGCGTGACCGAGAGCG < 41bp 0.464113487474691 0.711224809022732 0.045352638 0.041246742 prediction 0.422449618045464 Functional Gain - CPSF6 ENSG00000111605 CDS Human protein_coding chr12:69656300 chr12:69656301 stopgain 0.998 1 22 hm5C_associated_SNPs_124015 0 0 1 0 1 CPSF6 chr12:69656342 5'GT 69656342 Upstream 42bp
chr8 42206559 42206559 1 + A G rs147215490 42206556 + 42206536 42206576 41 TGGAGTAGGAACAAAAATTGCTGAAAAGATTGATGAGTTTT TGGAGTAGGAACAAAAATTGCTGGAAAGATTGATGAGTTTT < 41bp 0.527591018618351 0.738815373305951 0.3575862 0.4463899 prediction 0.422448709375201 Functional Gain - POLB ENSG00000070501 CDS Human protein_coding chr8:42206556 chr8:42206559 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_124016 0 0 1 0 2 POLB chr8:42206534 3'AG 42206534 Downstream 26bp
chr8 42206559 42206559 1 + A G rs147215490 42206556 + 42206536 42206576 41 TGGAGTAGGAACAAAAATTGCTGAAAAGATTGATGAGTTTT TGGAGTAGGAACAAAAATTGCTGGAAAGATTGATGAGTTTT < 41bp 0.527591018618351 0.738815373305951 0.3575862 0.4463899 prediction 0.422448709375201 Functional Gain - POLB ENSG00000070501 CDS Human protein_coding chr8:42206556 chr8:42206559 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_124016 0 0 1 0 2 POLB chr8:42206608 5'GT 42206608 Upstream 50bp
chr6 116544285 116544285 1 + C T rs370659130 116544284 + 116544264 116544304 41 TTACCAAGTCAGAGACCTTTCCGGACACTCGGTAAGTTACA TTACCAAGTCAGAGACCTTTCTGGACACTCGGTAAGTTACA < 41bp 0.604395366081747 0.815617717823511 0.8898504 0.21010414 prediction 0.422444703483529 Functional Gain - NT5DC1 ENSG00000178425 CDS Human protein_coding chr6:116544284 chr6:116544285 nonsynonymous SNV 0.509 0 22 hm5C_associated_SNPs_124017 0 0 1 0 2 NT5DC1 chr6:116544197 3'AG 116544197 Downstream 89bp
chr6 116544285 116544285 1 + C T rs370659130 116544284 + 116544264 116544304 41 TTACCAAGTCAGAGACCTTTCCGGACACTCGGTAAGTTACA TTACCAAGTCAGAGACCTTTCTGGACACTCGGTAAGTTACA < 41bp 0.604395366081747 0.815617717823511 0.8898504 0.21010414 prediction 0.422444703483529 Functional Gain - NT5DC1 ENSG00000178425 CDS Human protein_coding chr6:116544284 chr6:116544285 nonsynonymous SNV 0.509 0 22 hm5C_associated_SNPs_124017 0 0 1 0 2 NT5DC1 chr6:116544294 5'GT 116544294 Upstream 10bp
chr12 48134496 48134496 1 - G A rs575472779 48134497 - 48134477 48134517 41 GCTGCAGTACTGGGTGGCCACCGAGCTGTGTCTCTGCCCCG GCTGCAGTACTGGGTGGCCACTGAGCTGTGTCTCTGCCCCG < 41bp 0.544447064798756 0.755668099897784 0.6606634 0.8015523 prediction 0.422442070198057 Functional Gain - RAPGEF3 ENSG00000079337 CDS Human protein_coding chr12:48134497 chr12:48134496 synonymous SNV . 0 22 hm5C_associated_SNPs_124020 0 0 0 0 1 RAPGEF3 chr12:48134425 5'GT 48134425 Upstream 72bp
chr2 233322721 233322721 1 + C T rs145002990 233322720 + 233322700 233322740 41 TCCCACAGGCCTCTTTGAGCCCGGAGACACGAAATATGAGA TCCCACAGGCCTCTTTGAGCCTGGAGACACGAAATATGAGA < 41bp 0.584445110601898 0.795662314288636 0.15338868 0.08987054 prediction 0.422434407373476 Functional Gain - ALPI ENSG00000163295 CDS Human protein_coding chr2:233322720 chr2:233322721 synonymous SNV . 0 22 hm5C_associated_SNPs_124021 0 0 0 0 1 ALPI chr2:233322708 3'AG 233322708 Downstream 14bp
chr7 142997061 142997061 1 + C T UCEC 142997060 + 142997040 142997080 41 TTTGCACAGTTACCTGCACACCGAGTCACGGACTCCTGCAT TTTGCACAGTTACCTGCACACTGAGTCACGGACTCCTGCAT < 41bp 0.44846064387089 0.711208650706794 0.28750306 0.18002355 prediction 0.422417301413589 Functional Gain - CASP2 ENSG00000106144 CDS Human protein_coding chr7:142997060 chr7:142997061 stopgain 0.697 0 22 hm5C_associated_SNPs_124024 0 0 1 0 2 CASP2 chr7:142997016 3'AG 142997016 Downstream 46bp
chr7 142997061 142997061 1 + C T UCEC 142997060 + 142997040 142997080 41 TTTGCACAGTTACCTGCACACCGAGTCACGGACTCCTGCAT TTTGCACAGTTACCTGCACACTGAGTCACGGACTCCTGCAT < 41bp 0.44846064387089 0.711208650706794 0.28750306 0.18002355 prediction 0.422417301413589 Functional Gain - CASP2 ENSG00000106144 CDS Human protein_coding chr7:142997060 chr7:142997061 stopgain 0.697 0 22 hm5C_associated_SNPs_124024 0 0 1 0 2 CASP2 chr7:142997144 5'GT 142997144 Upstream 84bp
chr20 42679949 42679949 1 + C T HNSC 42679948 + 42679928 42679968 41 CCTGTCCTCCTCTCTTAGATCCAGGAGATGGTCCACTCGGA CCTGTCCTCCTCTCTTAGATCTAGGAGATGGTCCACTCGGA < 41bp 0.458894588778229 0.711202883944729 0.93202543 0.84613097 prediction 0.422405767889457 Functional Gain - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42679948 chr20:42679949 stopgain 0.996 1 22 hm5C_associated_SNPs_124025 0 0 0 0 1 TOX2 chr20:42679946 3'AG 42679946 Downstream 4bp
chr9 37080468 37080468 1 + C A rs576514717 37080464 + 37080444 37080484 41 TCTGCTGTCAGAAGCAGCAGCTGCCGCCGTGGAATCCAAAA TCTGCTGTCAGAAGCAGCAGCTGCAGCCGTGGAATCCAAAA < 41bp 0.339964974880089 0.711200632577594 0.26212865 0.4938228 prediction 0.422401265155188 Functional Gain - EBLN3P ENSG00000233137 ncRNA_exonic Human other chr9:37080464 chr9:37080468 . . 0 25 hm5C_associated_SNPs_124026 0 0 1 0 1 EBLN3P chr9:37080533 5'GT 37080533 Upstream 66bp
chr5 177035597 177035597 1 + C T CESC 177035596 + 177035576 177035616 41 CGCGAGGACGACGAGTTCTACCGGCGCATTAAGGGAGCTGG CGCGAGGACGACGAGTTCTACTGGCGCATTAAGGGAGCTGG < 41bp 0.570670664064895 0.7818667419125 0.90996087 0.886492 prediction 0.422392155695211 Functional Gain - B4GALT7 ENSG00000027847 CDS Human protein_coding chr5:177035596 chr5:177035597 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_124028 0 0 1 0 2 B4GALT7 chr5:177035540 3'AG 177035540 Downstream 58bp
chr5 177035597 177035597 1 + C T CESC 177035596 + 177035576 177035616 41 CGCGAGGACGACGAGTTCTACCGGCGCATTAAGGGAGCTGG CGCGAGGACGACGAGTTCTACTGGCGCATTAAGGGAGCTGG < 41bp 0.570670664064895 0.7818667419125 0.90996087 0.886492 prediction 0.422392155695211 Functional Gain - B4GALT7 ENSG00000027847 CDS Human protein_coding chr5:177035596 chr5:177035597 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_124028 0 0 1 0 2 B4GALT7 chr5:177035623 5'GT 177035623 Upstream 27bp
chrY 22921762 22921762 1 + T C LUAD 22921760 + 22921740 22921780 41 ATTGTCTTCTACAGGCACCTCGTCCATCGACAGGTCCTCAC ATTGTCTTCTACAGGCACCTCGCCCATCGACAGGTCCTCAC < 41bp 0.423326508076167 0.711192599948555 0.049488366 0.027843535 prediction 0.42238519989711 Functional Gain - RPS4Y2 ENSG00000157828 CDS Human other chrY:22921760 chrY:22921762 synonymous SNV . 0 23 hm5C_associated_SNPs_124029 0 0 0 0 1 RPS4Y2 chrY:22921754 3'AG 22921754 Downstream 9bp
chr17 48252625 48252625 1 + A G UCEC 48252622 + 48252602 48252642 41 CCACCTGTGCCTCCAGCATCCAGATGGTCCACCACTGCACC CCACCTGTGCCTCCAGCATCCAGGTGGTCCACCACTGCACC < 41bp 0.593756583255596 0.804946186553178 0.71729577 0.91606665 prediction 0.422379206595163 Functional Gain - SGCA ENSG00000108823 CDS Human protein_coding chr17:48252622 chr17:48252625 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_124031 0 0 0 0 1 SGCA chr17:48252618 3'AG 48252618 Downstream 8bp
chr11 118253321 118253321 1 + T C COAD 118253319 + 118253299 118253339 41 TGCAGAATGAAGAATCCCCACCTGAGGGCCAAACTAGCAGA TGCAGAATGAAGAATCCCCACCCGAGGGCCAAACTAGCAGA < 41bp 0.41121831874157 0.711188780133793 0.12544212 0.09550199 prediction 0.422377560267587 Functional Gain - UBE4A ENSG00000110344 CDS Human protein_coding chr11:118253319 chr11:118253321 nonsynonymous SNV 0.957 4 23 hm5C_associated_SNPs_124032 0 0 1 0 1 UBE4A chr11:118253304 3'AG 118253304 Downstream 18bp
chr2 189868811 189868811 1 + C T SKCM 189868810 + 189868790 189868830 41 GCAGCCCTGGAGTGTCTGGACCAAAAGGTGATGCTGGCCAA GCAGCCCTGGAGTGTCTGGACTAAAAGGTGATGCTGGCCAA < 41bp 0.452263554613482 0.711184003500784 0.45984536 0.38715068 prediction 0.422368007001567 Functional Gain - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189868810 chr2:189868811 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_124034 0 0 0 0 1 COL3A1 chr2:189868869 5'GT 189868869 Upstream 59bp
chr7 100198164 100198164 1 + T C rs368113090 100198161 + 100198141 100198181 41 TCTCTCCTCCTCCAAGGTCCCTCTGTGTGCCTGTGCCCTCT TCTCTCCTCCTCCAAGGTCCCTCCGTGTGCCTGTGCCCTCT < 41bp 0.496145672593147 0.711176655742868 0.24096748 0.9181811 prediction 0.422353311485736 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100198161 chr7:100198164 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_124035 0 0 0 0 1 FBXO24 chr7:100198157 3'AG 100198157 Downstream 8bp
chr20 43565288 43565288 1 + C T UCEC 43565287 + 43565267 43565307 41 GCACCATGCAGGTCCAGGAGCCGGCTGTGCACATCCCAGGA GCACCATGCAGGTCCAGGAGCTGGCTGTGCACATCCCAGGA < 41bp 0.465397970210264 0.71117049195516 0.5311584 0.23942503 prediction 0.422340983910319 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43565287 chr20:43565288 nonsynonymous SNV 0.508 1 22 hm5C_associated_SNPs_124036 0 0 1 0 2 PABPC1L chr20:43565278 3'AG 43565278 Downstream 11bp
chr20 43565288 43565288 1 + C T UCEC 43565287 + 43565267 43565307 41 GCACCATGCAGGTCCAGGAGCCGGCTGTGCACATCCCAGGA GCACCATGCAGGTCCAGGAGCTGGCTGTGCACATCCCAGGA < 41bp 0.465397970210264 0.71117049195516 0.5311584 0.23942503 prediction 0.422340983910319 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43565287 chr20:43565288 nonsynonymous SNV 0.508 1 22 hm5C_associated_SNPs_124036 0 0 1 0 2 PABPC1L chr20:43565371 5'GT 43565371 Upstream 84bp
chr20 31601629 31601629 1 + C T STAD 31601628 + 31601608 31601648 41 CCCTACAGCGCCCCAGAGCCCCTGGAGCTGACGCTGCCTGT CCCTACAGCGCCCCAGAGCCCTTGGAGCTGACGCTGCCTGT < 41bp 0.474901978980247 0.711166702297483 0.36829257 0.3250123 prediction 0.422333404594966 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31601628 chr20:31601629 synonymous SNV . 0 22 hm5C_associated_SNPs_124039 0 0 1 0 1 BPIFB2 chr20:31601616 3'AG 31601616 Downstream 14bp
chr10 79814319 79814319 1 + T A rs72642283 79814317 + 79814297 79814337 41 ATTGGGGCTTGGAGTGCAAGCATTGGGAAGAATTTCCCAGG ATTGGGGCTTGGAGTGCAAGCAATGGGAAGAATTTCCCAGG < 41bp 0.502012521135496 0.713176761552189 0.16336828 0.4514341 prediction 0.422328480833387 Functional Gain - RPS24 ENSG00000138326 CDS Human protein_coding chr10:79814317 chr10:79814319 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_124040 0 0 1 0 1 RPS24 chr10:79814289 3'AG 79814289 Downstream 31bp
chr22 21369471 21369471 1 + C T CESC 21369470 + 21369450 21369490 41 TGCCATGCTGACTCATGTGCCCGCAGCTAGCAGGAGCTGGC TGCCATGCTGACTCATGTGCCTGCAGCTAGCAGGAGCTGGC < 41bp 0.487846240846814 0.711161050392904 0.06875476 0.1463899 prediction 0.422322100785808 Functional Gain - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21369470 chr22:21369471 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_124042 0 0 0 0 1 P2RX6 chr22:21369549 5'GT 21369549 Upstream 79bp
chrX 153667183 153667183 1 + C T SKCM 153667182 + 153667162 153667202 41 GGCCGAGACTGGAATGTTGACCTGATTCCCAAATTCCTCAT GGCCGAGACTGGAATGTTGACTTGATTCCCAAATTCCTCAT < 41bp 0.618430061163388 0.829590113830361 0.14776188 0.08624691 prediction 0.422320105333947 Functional Gain - GDI1 ENSG00000203879 CDS Human protein_coding chrX:153667182 chrX:153667183 synonymous SNV . 0 22 hm5C_associated_SNPs_124043 0 0 1 0 2 GDI1 chrX:153667111 3'AG 153667111 Downstream 73bp
chrX 153667183 153667183 1 + C T SKCM 153667182 + 153667162 153667202 41 GGCCGAGACTGGAATGTTGACCTGATTCCCAAATTCCTCAT GGCCGAGACTGGAATGTTGACTTGATTCCCAAATTCCTCAT < 41bp 0.618430061163388 0.829590113830361 0.14776188 0.08624691 prediction 0.422320105333947 Functional Gain - GDI1 ENSG00000203879 CDS Human protein_coding chrX:153667182 chrX:153667183 synonymous SNV . 0 22 hm5C_associated_SNPs_124043 0 0 1 0 2 GDI1 chrX:153667210 5'GT 153667210 Upstream 28bp
chr6 43111167 43111167 1 + C T UCEC 43111166 + 43111146 43111186 41 GTCTCTCAGACAAGCCTGTGCCGGAGGAGTCGGAGGGCCCT GTCTCTCAGACAAGCCTGTGCTGGAGGAGTCGGAGGGCCCT < 41bp 0.593120383109926 0.804279455456095 0.9122696 0.5034193 prediction 0.422318144692338 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43111166 chr6:43111167 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_124044 0 0 1 0 2 PTK7 chr6:43111155 3'AG 43111155 Downstream 13bp
chr6 43111167 43111167 1 + C T UCEC 43111166 + 43111146 43111186 41 GTCTCTCAGACAAGCCTGTGCCGGAGGAGTCGGAGGGCCCT GTCTCTCAGACAAGCCTGTGCTGGAGGAGTCGGAGGGCCCT < 41bp 0.593120383109926 0.804279455456095 0.9122696 0.5034193 prediction 0.422318144692338 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43111166 chr6:43111167 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_124044 0 0 1 0 2 PTK7 chr6:43111160 3'AG 43111160 Downstream 8bp
chr17 73015831 73015831 1 + C T SKCM 73015830 + 73015810 73015850 41 CTTATTGTCGGAGTAGTGGTCCTGGGGGGCAGAATGTGAAC CTTATTGTCGGAGTAGTGGTCTTGGGGGGCAGAATGTGAAC < 41bp 0.458945532388161 0.711158188134877 0.36803567 0.549311 prediction 0.422316376269754 Functional Gain - MRPL58 ENSG00000167862 CDS Human protein_coding chr17:73015830 chr17:73015831 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_124045 0 0 1 0 2 MRPL58 chr17:73015795 3'AG 73015795 Downstream 37bp
chr17 73015831 73015831 1 + C T SKCM 73015830 + 73015810 73015850 41 CTTATTGTCGGAGTAGTGGTCCTGGGGGGCAGAATGTGAAC CTTATTGTCGGAGTAGTGGTCTTGGGGGGCAGAATGTGAAC < 41bp 0.458945532388161 0.711158188134877 0.36803567 0.549311 prediction 0.422316376269754 Functional Gain - MRPL58 ENSG00000167862 CDS Human protein_coding chr17:73015830 chr17:73015831 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_124045 0 0 1 0 2 MRPL58 chr17:73015854 5'GT 73015854 Upstream 24bp
chr7 156756646 156756646 1 + A G rs10267297 156756643 + 156756623 156756663 41 GCCCGGAAGCAGAGGATGAACACAGACATCCGGAGAAACAT GCCCGGAAGCAGAGGATGAACACGGACATCCGGAGAAACAT < 41bp 0.545480960384806 0.756638573296512 0.4348202 0.54399735 prediction 0.422315225823411 Functional Gain - NOM1 ENSG00000146909 CDS Human protein_coding chr7:156756643 chr7:156756646 synonymous SNV . 0 24 hm5C_associated_SNPs_124046 0 0 1 0 2 NOM1 chr7:156756599 3'AG 156756599 Downstream 48bp
chr7 156756646 156756646 1 + A G rs10267297 156756643 + 156756623 156756663 41 GCCCGGAAGCAGAGGATGAACACAGACATCCGGAGAAACAT GCCCGGAAGCAGAGGATGAACACGGACATCCGGAGAAACAT < 41bp 0.545480960384806 0.756638573296512 0.4348202 0.54399735 prediction 0.422315225823411 Functional Gain - NOM1 ENSG00000146909 CDS Human protein_coding chr7:156756643 chr7:156756646 synonymous SNV . 0 24 hm5C_associated_SNPs_124046 0 0 1 0 2 NOM1 chr7:156756720 5'GT 156756720 Upstream 75bp
chr1 227172992 227172992 1 + T C rs199724504 227172989 + 227172969 227173009 41 TGCCGACAGGGACAGGGAGACTGTGCGGGCGAAATCCATAG TGCCGACAGGGACAGGGAGACTGCGCGGGCGAAATCCATAG < 41bp 0.483327698712529 0.711154367552094 0.8796301 0.8948674 prediction 0.422308735104189 Functional Gain - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227172989 chr1:227172992 nonsynonymous SNV 0.214 2 24 hm5C_associated_SNPs_124048 0 0 1 0 2 COQ8A chr1:227172955 3'AG 227172955 Downstream 38bp
chr1 227172992 227172992 1 + T C rs199724504 227172989 + 227172969 227173009 41 TGCCGACAGGGACAGGGAGACTGTGCGGGCGAAATCCATAG TGCCGACAGGGACAGGGAGACTGCGCGGGCGAAATCCATAG < 41bp 0.483327698712529 0.711154367552094 0.8796301 0.8948674 prediction 0.422308735104189 Functional Gain - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227172989 chr1:227172992 nonsynonymous SNV 0.214 2 24 hm5C_associated_SNPs_124048 0 0 1 0 2 COQ8A chr1:227173041 5'GT 227173041 Upstream 50bp
chr11 64855433 64855433 1 + C T SKCM 64855432 + 64855412 64855452 41 GTCTCGGAAGCGGCCGCTGACCCTGCTCCAGCGGGCGGGGC GTCTCGGAAGCGGCCGCTGACTCTGCTCCAGCGGGCGGGGC < 41bp 0.605318249190535 0.816470367431164 0.77374405 0.38721594 prediction 0.422304236481257 Functional Gain - ZFPL1 ENSG00000162300 CDS Human protein_coding chr11:64855432 chr11:64855433 synonymous SNV . 0 22 hm5C_associated_SNPs_124049 0 0 1 0 1 ZFPL1 chr11:64855400 3'AG 64855400 Downstream 34bp
chr16 88873800 88873800 1 + A G SKCM 88873797 + 88873777 88873817 41 CTGAGCTGGCCCGCGTGCTGCGGAGCGTCTTTGTGTCCGAA CTGAGCTGGCCCGCGTGCTGCGGGGCGTCTTTGTGTCCGAA < 41bp 0.608455326046772 0.819599988303419 0.8635584 0.90670955 prediction 0.422289324513293 Functional Gain - CDT1 ENSG00000167513 CDS Human protein_coding chr16:88873797 chr16:88873800 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_124050 0 0 1 0 1 CDT1 chr16:88873890 5'GT 88873890 Upstream 91bp
chr9 127616498 127616498 1 + C A STAD 127616494 + 127616474 127616514 41 CTGTTTCTAGGTCAACTCTTCTGCCTTCTCCCCTGATGGCC CTGTTTCTAGGTCAACTCTTCTGCATTCTCCCCTGATGGCC < 41bp 0.287607196166861 0.711144401535567 0.33512777 0.31635046 prediction 0.422288803071134 Functional Gain - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127616494 chr9:127616498 synonymous SNV . 0 25 hm5C_associated_SNPs_124051 0 0 0 0 1 WDR38 chr9:127616484 3'AG 127616484 Downstream 15bp
chr8 62212783 62212783 1 + C T LUSC 62212782 + 62212762 62212802 41 TTCCCCGGGGTGCTGGAAAACCGAGACCATTACGGCAGGAA TTCCCCGGGGTGCTGGAAAACTGAGACCATTACGGCAGGAA < 41bp 0.463667400606336 0.711140452586112 0.47555554 0.31734574 prediction 0.422280905172224 Functional Gain - CLVS1 ENSG00000177182 CDS Human protein_coding chr8:62212782 chr8:62212783 stopgain 0.996 1 22 hm5C_associated_SNPs_124052 0 0 0 0 1 CLVS1 chr8:62212841 5'GT 62212841 Upstream 59bp
chr6 3015773 3015773 1 + T C COAD 3015770 + 3015750 3015790 41 GTTGCCGCCCACAGTTCCCGCTGTACTGGTTCAGCGTGCCA GTTGCCGCCCACAGTTCCCGCTGCACTGGTTCAGCGTGCCA < 41bp 0.549894567955359 0.761034335200342 0.07532942 0.036231726 prediction 0.422279534489965 Functional Gain - NQO2 ENSG00000124588 CDS Human protein_coding chr6:3015770 chr6:3015773 nonsynonymous SNV 0.836 2 24 hm5C_associated_SNPs_124053 0 0 1 0 1 NQO2 chr6:3015764 3'AG 3015764 Downstream 10bp
chr11 122774676 122774676 1 + C A LUSC 122774675 + 122774655 122774695 41 TATTCAGACCTCCGCTATGACCCGAACTGGAAGAGTAAGAA TATTCAGACCTCCGCTATGACACGAACTGGAAGAGTAAGAA < 41bp 0.624967186639804 0.836099936971255 0.040577948 0.10961127 prediction 0.422265500662902 Functional Gain - C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122774675 chr11:122774676 nonsynonymous SNV 0.859 4 22 hm5C_associated_SNPs_124054 0 0 0 0 1 C11orf63 chr11:122774633 3'AG 122774633 Downstream 44bp
chr6 161505604 161505604 1 + A G COAD 161505601 + 161505581 161505621 41 TGGCTTACAGGAGAGCTGTGCTGAATTTTGGACTAGTGCGG TGGCTTACAGGAGAGCTGTGCTGGATTTTGGACTAGTGCGG < 41bp 0.462678268647079 0.711129723857198 0.23505935 0.53809196 prediction 0.422259447714395 Functional Gain - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161505601 chr6:161505604 nonsynonymous SNV 0.968 4 24 hm5C_associated_SNPs_124058 0 0 1 0 2 MAP3K4 chr6:161505533 3'AG 161505533 Downstream 72bp
chr6 161505604 161505604 1 + A G COAD 161505601 + 161505581 161505621 41 TGGCTTACAGGAGAGCTGTGCTGAATTTTGGACTAGTGCGG TGGCTTACAGGAGAGCTGTGCTGGATTTTGGACTAGTGCGG < 41bp 0.462678268647079 0.711129723857198 0.23505935 0.53809196 prediction 0.422259447714395 Functional Gain - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161505601 chr6:161505604 nonsynonymous SNV 0.968 4 24 hm5C_associated_SNPs_124058 0 0 1 0 2 MAP3K4 chr6:161505649 5'GT 161505649 Upstream 46bp
chr11 33127159 33127159 1 - A G UCEC 33127162 - 33127142 33127182 41 TCAACGAGGTTGTGTTAATCCGATGATCAACATTGAACAGC TCAACGAGGTTGTGTTAATCCGACGATCAACATTGAACAGC < 41bp 0.528079472160728 0.739205422045496 0.2732306 0.1501418 prediction 0.422251899769536 Functional Gain - CSTF3 ENSG00000176102;ENSG00000176148 CDS Human protein_coding chr11:33127162 chr11:33127159 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_124059 0 0 1 0 2 CSTF3 chr11:33127113 5'GT 33127113 Upstream 47bp
chr11 33127159 33127159 1 - A G UCEC 33127162 - 33127142 33127182 41 TCAACGAGGTTGTGTTAATCCGATGATCAACATTGAACAGC TCAACGAGGTTGTGTTAATCCGACGATCAACATTGAACAGC < 41bp 0.528079472160728 0.739205422045496 0.2732306 0.1501418 prediction 0.422251899769536 Functional Gain - CSTF3 ENSG00000176102;ENSG00000176148 CDS Human other chr11:33127162 chr11:33127159 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_124059 0 0 1 0 2 CSTF3 chr11:33127239 3'AG 33127239 Downstream 81bp
chr18 66564616 66564616 1 + A G GBM 66564613 + 66564593 66564633 41 AAATAGATTAAGTGCAAACTCTCAAAGTCCTGATTTCAAGA AAATAGATTAAGTGCAAACTCTCGAAGTCCTGATTTCAAGA < 41bp 0.559044412094328 0.770167283621353 0.10508296 0.5477361 prediction 0.422245743054051 Functional Gain - CCDC102B ENSG00000150636 CDS Human protein_coding chr18:66564613 chr18:66564616 nonsynonymous SNV 0.098 0 24 hm5C_associated_SNPs_124061 0 0 0 0 1 CCDC102B chr18:66564665 5'GT 66564665 Upstream 50bp
chr19 11470381 11470381 1 + C T COAD 11470380 + 11470360 11470400 41 TGTCTACGCACTGGTCACTGCCGGGCCCACCCTCACGGTGA TGTCTACGCACTGGTCACTGCTGGGCCCACCCTCACGGTGA < 41bp 0.542064937216301 0.75318765905967 0.88309807 0.72285676 prediction 0.422245443686738 Functional Gain - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11470380 chr19:11470381 synonymous SNV . 0 22 hm5C_associated_SNPs_124062 0 0 0 0 2 PLPPR2 chr19:11470283 3'AG 11470283 Downstream 99bp
chr19 11470381 11470381 1 + C T COAD 11470380 + 11470360 11470400 41 TGTCTACGCACTGGTCACTGCCGGGCCCACCCTCACGGTGA TGTCTACGCACTGGTCACTGCTGGGCCCACCCTCACGGTGA < 41bp 0.542064937216301 0.75318765905967 0.88309807 0.72285676 prediction 0.422245443686738 Functional Gain - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11470380 chr19:11470381 synonymous SNV . 0 22 hm5C_associated_SNPs_124062 0 0 0 0 2 PLPPR2 chr19:11470396 5'GT 11470396 Upstream 16bp
chr3 37560842 37560842 1 + A G rs61751646 37560839 + 37560819 37560859 41 GGTGGGATAGTCCCTCAGTACTCAATGGTAATTAGTGTGAG GGTGGGATAGTCCCTCAGTACTCGATGGTAATTAGTGTGAG < 41bp 0.581390738089436 0.792497436006654 0.43787283 0.8511891 prediction 0.422213395834436 Functional Gain - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37560839 chr3:37560842 synonymous SNV . 0 24 hm5C_associated_SNPs_124067 0 0 0 0 2 ITGA9 chr3:37560751 3'AG 37560751 Downstream 92bp
chr3 37560842 37560842 1 + A G rs61751646 37560839 + 37560819 37560859 41 GGTGGGATAGTCCCTCAGTACTCAATGGTAATTAGTGTGAG GGTGGGATAGTCCCTCAGTACTCGATGGTAATTAGTGTGAG < 41bp 0.581390738089436 0.792497436006654 0.43787283 0.8511891 prediction 0.422213395834436 Functional Gain - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37560839 chr3:37560842 synonymous SNV . 0 24 hm5C_associated_SNPs_124067 0 0 0 0 2 ITGA9 chr3:37560845 5'GT 37560845 Upstream 4bp
chr6 117890851 117890851 1 + C A LUAD 117890850 + 117890830 117890870 41 CGCATCTATCAGCAGGTTGCCCCGGATGGATCTCAGAGATG CGCATCTATCAGCAGGTTGCCACGGATGGATCTCAGAGATG < 41bp 0.460071053951094 0.711106519814045 0.0908165 0.5070736 prediction 0.422213039628089 Functional Gain - GOPC ENSG00000047932 CDS Human other chr6:117890850 chr6:117890851 nonsynonymous SNV 0.600 4 22 hm5C_associated_SNPs_124068 0 0 0 0 1 DCBLD1;GOPC chr6:117890783 3'AG 117890783 Downstream 69bp
chr17 7453505 7453505 1 + C A rs62059804 7453501 + 7453481 7453521 41 CCTGAACCGACTAGTTCGGCCTCGCAGAAGTGGTGAGCATC CCTGAACCGACTAGTTCGGCCTCGAAGAAGTGGTGAGCATC < 41bp 0.282401322399306 0.711104280714651 0.07881084 0.43236265 prediction 0.422208561429302 Functional Gain - TNFSF12;TNFSF12-TNFSF13 ENSG00000239697;ENSG00000248871 CDS Human other chr17:7453501 chr17:7453505 synonymous SNV . 0 25 hm5C_associated_SNPs_124069 0 0 0 0 2 TNFSF12;TNFSF12-TNFSF13 chr17:7453437 3'AG 7453437 Downstream 69bp
chr17 7453505 7453505 1 + C A rs62059804 7453501 + 7453481 7453521 41 CCTGAACCGACTAGTTCGGCCTCGCAGAAGTGGTGAGCATC CCTGAACCGACTAGTTCGGCCTCGAAGAAGTGGTGAGCATC < 41bp 0.282401322399306 0.711104280714651 0.07881084 0.43236265 prediction 0.422208561429302 Functional Gain - TNFSF12;TNFSF12-TNFSF13 ENSG00000239697;ENSG00000248871 CDS Human other chr17:7453501 chr17:7453505 synonymous SNV . 0 25 hm5C_associated_SNPs_124069 0 0 0 0 2 TNFSF12;TNFSF12-TNFSF13 chr17:7453512 5'GT 7453512 Upstream 8bp
chr16 19474687 19474687 1 + C T SKCM 19474686 + 19474666 19474706 41 CAGTGTCTGAACTCCATTTCCCGGGTAAGTCAGTAAAACAG CAGTGTCTGAACTCCATTTCCTGGGTAAGTCAGTAAAACAG < 41bp 0.475344007583537 0.711102629844207 0.8827685 0.7118225 prediction 0.422205259688415 Functional Gain - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19474686 chr16:19474687 nonsynonymous SNV 0.614 1 22 hm5C_associated_SNPs_124071 0 0 0 0 2 TMC5 chr16:19474602 3'AG 19474602 Downstream 86bp
chr16 19474687 19474687 1 + C T SKCM 19474686 + 19474666 19474706 41 CAGTGTCTGAACTCCATTTCCCGGGTAAGTCAGTAAAACAG CAGTGTCTGAACTCCATTTCCTGGGTAAGTCAGTAAAACAG < 41bp 0.475344007583537 0.711102629844207 0.8827685 0.7118225 prediction 0.422205259688415 Functional Gain - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19474686 chr16:19474687 nonsynonymous SNV 0.614 1 22 hm5C_associated_SNPs_124071 0 0 0 0 2 TMC5 chr16:19474689 5'GT 19474689 Upstream 3bp
chr17 4060257 4060257 1 + C T HNSC 4060256 + 4060236 4060276 41 TGTGTGAGAACCACCGGCCCCCCTAGTGGCCAGATGCCGGA TGTGTGAGAACCACCGGCCCCTCTAGTGGCCAGATGCCGGA < 41bp 0.6248025836519 0.835893837973699 0.12685922 0.9311509 prediction 0.422182508643597 Functional Gain - CYB5D2 ENSG00000167740 CDS Human protein_coding chr17:4060256 chr17:4060257 nonsynonymous SNV 0.782 0 22 hm5C_associated_SNPs_124073 0 0 0 0 1 CYB5D2 chr17:4060160 3'AG 4060160 Downstream 98bp
chr1 35873657 35873657 1 + A G PAAD 35873654 + 35873634 35873674 41 CATTCTGTCCTGCACTTTTGCTGAGTTGAGTTTGGGCTTAT CATTCTGTCCTGCACTTTTGCTGGGTTGAGTTTGGGCTTAT < 41bp 0.57322760337952 0.784318695176699 0.33515185 0.81440544 prediction 0.42218218359436 Functional Gain - ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35873654 chr1:35873657 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_124074 0 0 1 0 1 ZMYM4 chr1:35873609 3'AG 35873609 Downstream 49bp
chr1 156761540 156761540 1 + C A rs17850664 156761536 + 156761516 156761556 41 GCACAGGACCCGGCCCTGGTCCCCCCCCAGGAAATTGCCCC GCACAGGACCCGGCCCTGGTCCCCACCCAGGAAATTGCCCC < 41bp 0.276748708686144 0.711090744882477 0.037297398 0.030768394 prediction 0.422181489764954 Functional Gain - PRCC ENSG00000143294 CDS Human protein_coding chr1:156761536 chr1:156761540 nonsynonymous SNV 0.971 0 25 hm5C_associated_SNPs_124075 0 0 1 0 2 PRCC chr1:156761489 3'AG 156761489 Downstream 52bp
chr1 156761540 156761540 1 + C A rs17850664 156761536 + 156761516 156761556 41 GCACAGGACCCGGCCCTGGTCCCCCCCCAGGAAATTGCCCC GCACAGGACCCGGCCCTGGTCCCCACCCAGGAAATTGCCCC < 41bp 0.276748708686144 0.711090744882477 0.037297398 0.030768394 prediction 0.422181489764954 Functional Gain - PRCC ENSG00000143294 CDS Human protein_coding chr1:156761536 chr1:156761540 nonsynonymous SNV 0.971 0 25 hm5C_associated_SNPs_124075 0 0 1 0 2 PRCC chr1:156761584 5'GT 156761584 Upstream 45bp
chr17 72348396 72348396 1 + T C LUAD 72348393 + 72348373 72348413 41 TCCCGCAGCGCCTGGAAGAGCTCTACGAAGTGTACCTGCGG TCCCGCAGCGCCTGGAAGAGCTCCACGAAGTGTACCTGCGG < 41bp 0.559886970885644 0.770976340109973 0.8713311 0.89864844 prediction 0.422178738448657 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72348393 chr17:72348396 nonsynonymous SNV 0.932 2 24 hm5C_associated_SNPs_124076 0 0 0 0 1 KIF19 chr17:72348358 3'AG 72348358 Downstream 39bp
chr10 103190180 103190180 1 + C T LUAD 103190179 + 103190159 103190199 41 TCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCAC TCGCTGCGATGCCTGTATAACTCAGGGACTGGCGCACTCAC < 41bp 0.443881976071626 0.711074442775564 0.1635991 0.14579713 prediction 0.422148885551127 Functional Gain - BTRC ENSG00000166167 CDS Human protein_coding chr10:103190179 chr10:103190180 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_124082 0 0 1 0 2 BTRC chr10:103190102 3'AG 103190102 Downstream 79bp
chr10 103190180 103190180 1 + C T LUAD 103190179 + 103190159 103190199 41 TCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCAC TCGCTGCGATGCCTGTATAACTCAGGGACTGGCGCACTCAC < 41bp 0.443881976071626 0.711074442775564 0.1635991 0.14579713 prediction 0.422148885551127 Functional Gain - BTRC ENSG00000166167 CDS Human protein_coding chr10:103190179 chr10:103190180 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_124082 0 0 1 0 2 BTRC chr10:103190209 5'GT 103190209 Upstream 30bp
chr11 60470857 60470857 1 + C T SKCM 60470856 + 60470836 60470876 41 TGGCTCTCCTGACAGGCCATCCAGATCATCATTGGCCTGGC TGGCTCTCCTGACAGGCCATCTAGATCATCATTGGCCTGGC < 41bp 0.609588068611637 0.820660318271908 0.24013773 0.24526551 prediction 0.422144499320541 Functional Gain - MS4A8 ENSG00000166959 CDS Human protein_coding chr11:60470856 chr11:60470857 stopgain 0.942 1 22 hm5C_associated_SNPs_124084 0 0 0 0 1 MS4A8 chr11:60470851 3'AG 60470851 Downstream 7bp
chr19 22785505 22785505 1 + T C UCEC 22785503 + 22785483 22785523 41 CTCTCTGGAGAGACAGACACCATCGGTGAGGCGGAGGCCAG CTCTCTGGAGAGACAGACACCACCGGTGAGGCGGAGGCCAG < 41bp 0.574140015415404 0.785211653328624 0.25731733 0.3115046 prediction 0.422143275826441 Functional Gain - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22785503 chr19:22785505 . . 0 23 hm5C_associated_SNPs_124085 0 0 0 4 1 GOLGA2P9 chr19:22785507 5'GT 22785507 Upstream 3bp
chr7 130002807 130002807 1 + C T HNSC 130002806 + 130002786 130002826 41 TCATAGAGCTCGTCACAAACCCTGATGGGTTTGCTTTTACC TCATAGAGCTCGTCACAAACCTTGATGGGTTTGCTTTTACC < 41bp 0.441844640107626 0.711071589405325 0.06752971 0.12064475 prediction 0.422143178810651 Functional Gain - CPA5 ENSG00000158525 CDS Human protein_coding chr7:130002806 chr7:130002807 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_124086 0 0 0 0 2 CPA5 chr7:130002725 3'AG 130002725 Downstream 83bp
chr7 130002807 130002807 1 + C T HNSC 130002806 + 130002786 130002826 41 TCATAGAGCTCGTCACAAACCCTGATGGGTTTGCTTTTACC TCATAGAGCTCGTCACAAACCTTGATGGGTTTGCTTTTACC < 41bp 0.441844640107626 0.711071589405325 0.06752971 0.12064475 prediction 0.422143178810651 Functional Gain - CPA5 ENSG00000158525 CDS Human protein_coding chr7:130002806 chr7:130002807 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_124086 0 0 0 0 2 CPA5 chr7:130002835 5'GT 130002835 Upstream 29bp
chr11 85366750 85366750 1 + C G HNSC 85366749 + 85366729 85366769 41 TGTAAATGGTGGTCTAGCAGCCAGGTAGGAAATAAAAAACT TGTAAATGGTGGTCTAGCAGCGAGGTAGGAAATAAAAAACT < 41bp 0.415151343765823 0.711066236308854 0.576353 0.6710043 prediction 0.422132472617708 Functional Gain - TMEM126A ENSG00000171202 CDS Human protein_coding chr11:85366749 chr11:85366750 synonymous SNV . 0 22 hm5C_associated_SNPs_124087 0 0 1 0 1 TMEM126A chr11:85366752 5'GT 85366752 Upstream 3bp
chr9 135862139 135862139 1 + C T LIHC 135862138 + 135862118 135862158 41 CCCGTGTGCAGGAAGATGAACCGCTCTGGCCTCCTGCCCTT CCCGTGTGCAGGAAGATGAACTGCTCTGGCCTCCTGCCCTT < 41bp 0.476984404551778 0.711064471374702 0.3583572 0.47450507 prediction 0.422128942749404 Functional Gain - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135862138 chr9:135862139 nonsynonymous SNV 0.010 0 22 hm5C_associated_SNPs_124088 0 0 0 0 2 GFI1B chr9:135862046 3'AG 135862046 Downstream 94bp
chr9 135862139 135862139 1 + C T LIHC 135862138 + 135862118 135862158 41 CCCGTGTGCAGGAAGATGAACCGCTCTGGCCTCCTGCCCTT CCCGTGTGCAGGAAGATGAACTGCTCTGGCCTCCTGCCCTT < 41bp 0.476984404551778 0.711064471374702 0.3583572 0.47450507 prediction 0.422128942749404 Functional Gain - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135862138 chr9:135862139 nonsynonymous SNV 0.010 0 22 hm5C_associated_SNPs_124088 0 0 0 0 2 GFI1B chr9:135862165 5'GT 135862165 Upstream 27bp
chr2 10136015 10136015 1 + T C LIHC 10136013 + 10135993 10136033 41 TTGGATCACTGCAGCTCTGTCTTGAAAAGGGGGCCGTACGG TTGGATCACTGCAGCTCTGTCTCGAAAAGGGGGCCGTACGG < 41bp 0.669483549985142 0.880547632779887 0.60538465 0.9252299 prediction 0.422128165589491 Functional Gain - GRHL1 ENSG00000134317 CDS Human protein_coding chr2:10136013 chr2:10136015 stoploss 0.620 1 23 hm5C_associated_SNPs_124089 0 0 1 0 2 GRHL1 chr2:10136007 3'AG 10136007 Downstream 9bp
chr2 10136015 10136015 1 + T C LIHC 10136013 + 10135993 10136033 41 TTGGATCACTGCAGCTCTGTCTTGAAAAGGGGGCCGTACGG TTGGATCACTGCAGCTCTGTCTCGAAAAGGGGGCCGTACGG < 41bp 0.669483549985142 0.880547632779887 0.60538465 0.9252299 prediction 0.422128165589491 Functional Gain - GRHL1 ENSG00000134317 CDS Human protein_coding chr2:10136013 chr2:10136015 stoploss 0.620 1 23 hm5C_associated_SNPs_124089 0 0 1 0 2 GRHL1 chr2:10136098 5'GT 10136098 Upstream 84bp
chr10 118383552 118383552 1 + C A ACC 118383551 + 118383531 118383571 41 TAAAATTACTTCCCTGGTCCCCCGAGGACATTGACACCCGC TAAAATTACTTCCCTGGTCCCACGAGGACATTGACACCCGC < 41bp 0.454215425774439 0.71105580611657 0.24641028 0.37025213 prediction 0.422111612233141 Functional Gain - PNLIPRP2 ENSG00000165862 CDS Human other chr10:118383551 chr10:118383552 nonsynonymous SNV 0.018 4 22 hm5C_associated_SNPs_124090 0 0 0 0 2 PNLIPRP2 chr10:118383457 3'AG 118383457 Downstream 96bp
chr10 118383552 118383552 1 + C A ACC 118383551 + 118383531 118383571 41 TAAAATTACTTCCCTGGTCCCCCGAGGACATTGACACCCGC TAAAATTACTTCCCTGGTCCCACGAGGACATTGACACCCGC < 41bp 0.454215425774439 0.71105580611657 0.24641028 0.37025213 prediction 0.422111612233141 Functional Gain - PNLIPRP2 ENSG00000165862 CDS Human other chr10:118383551 chr10:118383552 nonsynonymous SNV 0.018 4 22 hm5C_associated_SNPs_124090 0 0 0 0 2 PNLIPRP2 chr10:118383610 5'GT 118383610 Upstream 59bp
chr3 38357085 38357085 1 + C T STAD 38357084 + 38357064 38357104 41 GACTCAAGTGGCCACGTTGTCCGGCCACAGAGCTGAAATCC GACTCAAGTGGCCACGTTGTCTGGCCACAGAGCTGAAATCC < 41bp 0.567552786958393 0.778598579398254 0.40513694 0.31385678 prediction 0.422091584879722 Functional Gain - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38357084 chr3:38357085 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_124094 0 0 0 1 1 SLC22A14 chr3:38357049 3'AG 38357049 Downstream 37bp
chr1 158813818 158813818 1 + C T STAD 158813817 + 158813797 158813837 41 CCCAAGAGCAGAGTAAGCCCCCAGGTCCCTCAGGAGCCAGC CCCAAGAGCAGAGTAAGCCCCTAGGTCCCTCAGGAGCCAGC < 41bp 0.594012302346405 0.805052538279971 0.7692514 0.5630606 prediction 0.422080471867133 Functional Gain - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813817 chr1:158813818 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_124095 0 0 0 0 2 MNDA chr1:158813745 3'AG 158813745 Downstream 74bp
chr1 158813818 158813818 1 + C T STAD 158813817 + 158813797 158813837 41 CCCAAGAGCAGAGTAAGCCCCCAGGTCCCTCAGGAGCCAGC CCCAAGAGCAGAGTAAGCCCCTAGGTCCCTCAGGAGCCAGC < 41bp 0.594012302346405 0.805052538279971 0.7692514 0.5630606 prediction 0.422080471867133 Functional Gain - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813817 chr1:158813818 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_124095 0 0 0 0 2 MNDA chr1:158813912 5'GT 158813912 Upstream 95bp
chr15 92647678 92647678 1 + C T COAD 92647677 + 92647657 92647697 41 AAGCGAGCAGGCCATGCTCTCCGAAAGAGAATACGAGAGAC AAGCGAGCAGGCCATGCTCTCTGAAAGAGAATACGAGAGAC < 41bp 0.624143473821047 0.835181310581007 0.70242715 0.5053019 prediction 0.422075673519922 Functional Gain - SLCO3A1 ENSG00000176463 CDS Human protein_coding chr15:92647677 chr15:92647678 synonymous SNV . 0 22 hm5C_associated_SNPs_124099 0 0 0 0 1 SLCO3A1 chr15:92647772 5'GT 92647772 Upstream 95bp
chr22 30772331 30772331 1 + C T SKCM 30772330 + 30772310 30772350 41 AGTCCAGGCCAAGAGCACATCCCCAGGGTGAGTGAGGCTTT AGTCCAGGCCAAGAGCACATCTCCAGGGTGAGTGAGGCTTT < 41bp 0.631678562478676 0.842709721068723 0.17134035 0.9115019 prediction 0.422062317180093 Functional Gain - CCDC157 ENSG00000187860 CDS Human protein_coding chr22:30772330 chr22:30772331 synonymous SNV . 0 22 hm5C_associated_SNPs_124101 0 0 0 0 1 CCDC157 chr22:30772248 3'AG 30772248 Downstream 84bp
chr20 58348487 58348487 1 + C A COAD 58348483 + 58348463 58348503 41 TTGAGGAGCTGCACAGGGCGCTGGCCACGAAGCACCGCCAG TTGAGGAGCTGCACAGGGCGCTGGACACGAAGCACCGCCAG < 41bp 0.727576177777415 0.938600288370593 0.41971704 0.46458086 prediction 0.422048221186356 Functional Gain - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58348483 chr20:58348487 nonsynonymous SNV 0.812 4 25 hm5C_associated_SNPs_124106 0 0 0 0 1 PHACTR3 chr20:58348508 5'GT 58348508 Upstream 22bp
chrX 150908151 150908151 1 + C T SKCM 150908150 + 150908130 150908170 41 GCCTGAACTCCAGACTGTGACCACACAGGAGGGGGATGGCA GCCTGAACTCCAGACTGTGACTACACAGGAGGGGGATGGCA < 41bp 0.44737063560257 0.711020303475583 0.048471272 0.87834644 prediction 0.422040606951167 Functional Gain - CNGA2 ENSG00000183862 CDS Human protein_coding chrX:150908150 chrX:150908151 synonymous SNV . 0 22 hm5C_associated_SNPs_124107 0 0 0 0 1 CNGA2 chrX:150908204 5'GT 150908204 Upstream 54bp
chr8 66619297 66619297 1 + C A STAD 66619296 + 66619276 66619316 41 ACCACCACACCCTCCACCTCCCCCACCGCCCCTGCCTCCCC ACCACCACACCCTCCACCTCCACCACCGCCCCTGCCTCCCC < 41bp 0.614926577079883 0.825938542572555 0.015658796 0.13451603 prediction 0.422023930985345 Functional Gain - MTFR1 ENSG00000066855 CDS Human protein_coding chr8:66619296 chr8:66619297 synonymous SNV . 0 22 hm5C_associated_SNPs_124111 0 0 1 0 1 MTFR1 chr8:66619245 3'AG 66619245 Downstream 53bp
chr11 7437333 7437333 1 + C A HNSC 7437329 + 7437309 7437349 41 TGCTATCTTCCAACGGCTGGCAGGCTGACCATTACCATTAT TGCTATCTTCCAACGGCTGGCAGGATGACCATTACCATTAT < 41bp 0.295891598376557 0.71100255522478 0.3084402 0.4675255 prediction 0.42200511044956 Functional Gain - SYT9 ENSG00000170743 CDS Human protein_coding chr11:7437329 chr11:7437333 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_124116 0 0 1 1 2 SYT9 chr11:7437273 3'AG 7437273 Downstream 61bp
chr11 7437333 7437333 1 + C A HNSC 7437329 + 7437309 7437349 41 TGCTATCTTCCAACGGCTGGCAGGCTGACCATTACCATTAT TGCTATCTTCCAACGGCTGGCAGGATGACCATTACCATTAT < 41bp 0.295891598376557 0.71100255522478 0.3084402 0.4675255 prediction 0.42200511044956 Functional Gain - SYT9 ENSG00000170743 CDS Human protein_coding chr11:7437329 chr11:7437333 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_124116 0 0 1 1 2 SYT9 chr11:7437393 5'GT 7437393 Upstream 61bp
chr15 89172561 89172561 1 + C A UCEC 89172557 + 89172537 89172577 41 TCGGAGCCAGACCCGGGATACGACCTATGTCCCAAACTTCC TCGGAGCCAGACCCGGGATACGACATATGTCCCAAACTTCC < 41bp 0.282918385121543 0.711000913663692 0.07125834 0.14039126 prediction 0.422001827327384 Functional Gain - AEN ENSG00000181026 CDS Human protein_coding chr15:89172557 chr15:89172561 synonymous SNV . 0 25 hm5C_associated_SNPs_124120 0 0 1 0 1 AEN chr15:89172657 5'GT 89172657 Upstream 97bp
chr12 102542105 102542105 1 + T C UCEC 102542103 + 102542083 102542123 41 TTACCAGTTGAAAACATGGACGTGACTGACCATTATGAGGA TTACCAGTTGAAAACATGGACGCGACTGACCATTATGAGGA < 41bp 0.431647520557695 0.710990651342257 0.25715423 0.14536634 prediction 0.421981302684514 Functional Gain - PARPBP ENSG00000185480 CDS Human protein_coding chr12:102542103 chr12:102542105 nonsynonymous SNV 0.154 0 23 hm5C_associated_SNPs_124125 0 0 1 0 2 PARPBP chr12:102542008 3'AG 102542008 Downstream 98bp
chr12 102542105 102542105 1 + T C UCEC 102542103 + 102542083 102542123 41 TTACCAGTTGAAAACATGGACGTGACTGACCATTATGAGGA TTACCAGTTGAAAACATGGACGCGACTGACCATTATGAGGA < 41bp 0.431647520557695 0.710990651342257 0.25715423 0.14536634 prediction 0.421981302684514 Functional Gain - PARPBP ENSG00000185480 CDS Human protein_coding chr12:102542103 chr12:102542105 nonsynonymous SNV 0.154 0 23 hm5C_associated_SNPs_124125 0 0 1 0 2 PARPBP chr12:102542013 3'AG 102542013 Downstream 93bp
chr5 176868795 176868795 1 + C A SARC 176868794 + 176868774 176868814 41 CTCCCCACCCGCCTCTAGCCCCCAGCCCGAGGCCCCCACCA CTCCCCACCCGCCTCTAGCCCACAGCCCGAGGCCCCCACCA < 41bp 0.461821008101483 0.710977399743814 0.19163409 0.08765003 prediction 0.421954799487629 Functional Gain - GRK6 ENSG00000198055 CDS Human protein_coding chr5:176868794 chr5:176868795 synonymous SNV . 0 22 hm5C_associated_SNPs_124129 0 0 1 0 1 GRK6 chr5:176868738 3'AG 176868738 Downstream 58bp
chr14 21467928 21467928 1 + T C rs2234633 21467926 + 21467906 21467946 41 CACCGGCTAGTCCTCAGACTCCTGGGCTGTATTTCTGCTGG CACCGGCTAGTCCTCAGACTCCCGGGCTGTATTTCTGCTGG < 41bp 0.441118259160852 0.71097474985465 0.24667895 0.25333774 prediction 0.4219494997093 Functional Gain - SLC39A2 ENSG00000165794 CDS Human protein_coding chr14:21467926 chr14:21467928 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_124130 0 0 0 0 1 SLC39A2 chr14:21467901 3'AG 21467901 Downstream 28bp
chr1 909216 909216 1 + C T SKCM 909215 + 909195 909235 41 CCCTGGCTCTCCCTGCAGTTCCTCAGTGCCATGCAGAGTGC CCCTGGCTCTCCCTGCAGTTCTTCAGTGCCATGCAGAGTGC < 41bp 0.454482269131292 0.710969395590169 0.12966383 0.30572504 prediction 0.421938791180338 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:909215 chr1:909216 nonsynonymous SNV 0.059 3 22 hm5C_associated_SNPs_124131 0 0 0 0 1 PLEKHN1 chr1:909213 3'AG 909213 Downstream 4bp
chr11 111754522 111754522 1 + C G LUAD 111754521 + 111754501 111754541 41 AGCGAGAGCCTCACTGGTTCCCAGGACATCAACCTGAACTG AGCGAGAGCCTCACTGGTTCCGAGGACATCAACCTGAACTG < 41bp 0.678691006447147 0.889659861421148 0.4754359 0.44513285 prediction 0.421937709948002 Functional Gain - C11orf1 ENSG00000137720 CDS Human protein_coding chr11:111754521 chr11:111754522 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_124132 0 0 1 0 1 C11orf1 chr11:111754495 3'AG 111754495 Downstream 28bp
chr5 177020677 177020677 1 + C T UCEC 177020676 + 177020656 177020696 41 CCTGGCCCGGCAGTATGGCTCCGAGGGCAGGTTCACTTTCA CCTGGCCCGGCAGTATGGCTCTGAGGGCAGGTTCACTTTCA < 41bp 0.594346146573591 0.805310274562067 0.91198206 0.5695803 prediction 0.421928255976952 Functional Gain - TMED9 ENSG00000184840 CDS Human protein_coding chr5:177020676 chr5:177020677 synonymous SNV . 0 22 hm5C_associated_SNPs_124134 0 0 1 0 2 TMED9 chr5:177020651 3'AG 177020651 Downstream 27bp
chr5 177020677 177020677 1 + C T UCEC 177020676 + 177020656 177020696 41 CCTGGCCCGGCAGTATGGCTCCGAGGGCAGGTTCACTTTCA CCTGGCCCGGCAGTATGGCTCTGAGGGCAGGTTCACTTTCA < 41bp 0.594346146573591 0.805310274562067 0.91198206 0.5695803 prediction 0.421928255976952 Functional Gain - TMED9 ENSG00000184840 CDS Human protein_coding chr5:177020676 chr5:177020677 synonymous SNV . 0 22 hm5C_associated_SNPs_124134 0 0 1 0 2 TMED9 chr5:177020776 5'GT 177020776 Upstream 100bp
chr7 140774467 140774467 1 + C A rs477223 140774466 + 140774446 140774486 41 CCACCGGCAGGGCTTCGACCCCGAGATCGCCGCCCTCATTC CCACCGGCAGGGCTTCGACCCAGAGATCGCCGCCCTCATTC < 41bp 0.465435588469966 0.710952645443344 0.36614063 0.9191277 prediction 0.421905290886688 Functional Gain - TMEM178B ENSG00000261115 CDS Human protein_coding chr7:140774466 chr7:140774467 synonymous SNV . 0 22 hm5C_associated_SNPs_124135 0 0 0 0 1 TMEM178B chr7:140774492 5'GT 140774492 Upstream 26bp
chr1 196654310 196654310 1 + C T UCEC 196654309 + 196654289 196654329 41 AATGGTTTTTATCCTGCAACCCGGGGAAATACAGCAAAATG AATGGTTTTTATCCTGCAACCTGGGGAAATACAGCAAAATG < 41bp 0.584455570380286 0.795399782353625 0.34788108 0.07216188 prediction 0.421888423946679 Functional Gain - CFH ENSG00000000971 CDS Human protein_coding chr1:196654309 chr1:196654310 nonsynonymous SNV 0.000 3 22 hm5C_associated_SNPs_124140 0 0 1 0 1 CFH chr1:196654367 5'GT 196654367 Upstream 58bp
chr3 195959296 195959296 1 + C A LUAD 195959295 + 195959275 195959315 41 TTTTATGTTCCGCAGGTTCTCCTCATCCTGACTGCCCTACA TTTTATGTTCCGCAGGTTCTCATCATCCTGACTGCCCTACA < 41bp 0.449469090412673 0.710942458111824 0.22266892 0.39051956 prediction 0.421884916223648 Functional Gain - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195959295 chr3:195959296 nonsynonymous SNV 0.287 1 22 hm5C_associated_SNPs_124141 0 0 1 0 2 SLC51A chr3:195959290 3'AG 195959290 Downstream 7bp
chr3 195959296 195959296 1 + C A LUAD 195959295 + 195959275 195959315 41 TTTTATGTTCCGCAGGTTCTCCTCATCCTGACTGCCCTACA TTTTATGTTCCGCAGGTTCTCATCATCCTGACTGCCCTACA < 41bp 0.449469090412673 0.710942458111824 0.22266892 0.39051956 prediction 0.421884916223648 Functional Gain - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195959295 chr3:195959296 nonsynonymous SNV 0.287 1 22 hm5C_associated_SNPs_124141 0 0 1 0 2 SLC51A chr3:195959395 5'GT 195959395 Upstream 100bp
chrX 52844155 52844155 1 + C A OV 52844151 + 52844131 52844171 41 CTGATCTCCAGGAGCTGTCTCAGTCAAAGACTGGGGATGAA CTGATCTCCAGGAGCTGTCTCAGTAAAAGACTGGGGATGAA < 41bp 0.305002074330694 0.710942158607652 0.1404402 0.3486002 prediction 0.421884317215305 Functional Gain - XAGE5 ENSG00000171405 CDS Human protein_coding chrX:52844151 chrX:52844155 stopgain 0.107 0 25 hm5C_associated_SNPs_124142 0 0 0 0 2 XAGE5 chrX:52844116 3'AG 52844116 Downstream 40bp
chrX 52844155 52844155 1 + C A OV 52844151 + 52844131 52844171 41 CTGATCTCCAGGAGCTGTCTCAGTCAAAGACTGGGGATGAA CTGATCTCCAGGAGCTGTCTCAGTAAAAGACTGGGGATGAA < 41bp 0.305002074330694 0.710942158607652 0.1404402 0.3486002 prediction 0.421884317215305 Functional Gain - XAGE5 ENSG00000171405 CDS Human protein_coding chrX:52844151 chrX:52844155 stopgain 0.107 0 25 hm5C_associated_SNPs_124142 0 0 0 0 2 XAGE5 chrX:52844241 5'GT 52844241 Upstream 87bp
chr1 206653431 206653431 1 + A G UCEC 206653428 + 206653408 206653448 41 CCCTGCTGGATGGGCAGGAGCTAATGTTTCGGGGGCTGCAC CCCTGCTGGATGGGCAGGAGCTAGTGTTTCGGGGGCTGCAC < 41bp 0.448557438571862 0.71093786738203 0.6075561 0.47872767 prediction 0.421875734764061 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206653428 chr1:206653431 nonsynonymous SNV 0.892 1 24 hm5C_associated_SNPs_124143 0 0 1 0 2 IKBKE chr1:206653365 3'AG 206653365 Downstream 67bp
chr1 206653431 206653431 1 + A G UCEC 206653428 + 206653408 206653448 41 CCCTGCTGGATGGGCAGGAGCTAATGTTTCGGGGGCTGCAC CCCTGCTGGATGGGCAGGAGCTAGTGTTTCGGGGGCTGCAC < 41bp 0.448557438571862 0.71093786738203 0.6075561 0.47872767 prediction 0.421875734764061 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206653428 chr1:206653431 nonsynonymous SNV 0.892 1 24 hm5C_associated_SNPs_124143 0 0 1 0 2 IKBKE chr1:206653456 5'GT 206653456 Upstream 26bp
chr11 49598445 49598445 1 + C G HNSC 49598441 + 49598421 49598461 41 GTACAACTGGACCTATGTATCAGCCGTACACACAGAAGGTG GTACAACTGGACCTATGTATCAGCGGTACACACAGAAGGTG < 41bp 0.431250116373869 0.710936380997792 0.7190045 0.9017709 prediction 0.421872761995584 Functional Gain - LOC440040 ENSG00000205035 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:49598441 chr11:49598445 . . 0 25 hm5C_associated_SNPs_124144 0 0 0 0 1 LOC440040 chr11:49598458 5'GT 49598458 Upstream 14bp
chr14 69727167 69727167 1 + C T COAD 69727166 + 69727146 69727186 41 TCGGAGCAGCTCCGCGAGGACCGCACCATCCCGCTCATTGT TCGGAGCAGCTCCGCGAGGACTGCACCATCCCGCTCATTGT < 41bp 0.583464813829322 0.794399380160143 0.13910621 0.102060705 prediction 0.421869132661642 Functional Gain - GALNT16 ENSG00000100626 CDS Human protein_coding chr14:69727166 chr14:69727167 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_124145 0 0 0 0 1 GALNT16 chr14:69727184 5'GT 69727184 Upstream 18bp
chr21 41143078 41143078 1 + C A HNSC 41143077 + 41143057 41143097 41 GACTTTGACTTGCGTGGCTACCTGGAAGAGCCTGAAGGCCC GACTTTGACTTGCGTGGCTACATGGAAGAGCCTGAAGGCCC < 41bp 0.440855301722172 0.710926500843467 0.19754449 0.5410837 prediction 0.421853001686934 Functional Gain - IGSF5 ENSG00000183067 CDS Human protein_coding chr21:41143077 chr21:41143078 synonymous SNV . 0 22 hm5C_associated_SNPs_124148 0 0 0 0 1 IGSF5 chr21:41143142 5'GT 41143142 Upstream 65bp
chr12 4662210 4662210 1 + T C rs17850028 4662207 + 4662187 4662227 41 GAGGATAATGACGAAGACTTCTCTATGAGAAAAAGTAAAGT GAGGATAATGACGAAGACTTCTCCATGAGAAAAAGTAAAGT < 41bp 0.474864401869864 0.71092162804025 0.89450324 0.9392897 prediction 0.421843256080499 Functional Gain - RAD51AP1 ENSG00000111247 CDS Human protein_coding chr12:4662207 chr12:4662210 synonymous SNV . 0 24 hm5C_associated_SNPs_124152 0 0 1 2 1 RAD51AP1 chr12:4662149 3'AG 4662149 Downstream 62bp
chr5 76249947 76249947 1 + A G UCEC 76249944 + 76249924 76249964 41 AGCCTTCTTCATCAGCGAGCCCGAGGAGTTCATTACCATCC AGCCTTCTTCATCAGCGAGCCCGGGGAGTTCATTACCATCC < 41bp 0.463153584984409 0.710913611096887 0.20637786 0.5641705 prediction 0.421827222193773 Functional Gain - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76249944 chr5:76249947 nonsynonymous SNV 0.994 0 24 hm5C_associated_SNPs_124157 0 0 0 0 1 CRHBP chr5:76250011 5'GT 76250011 Upstream 65bp
chrX 47041620 47041620 1 + T C UCEC 47041617 + 47041597 47041637 41 TGGGATGGGGAGAGGCGGACCTATGTTCCCGCCCTGGAGCA TGGGATGGGGAGAGGCGGACCTACGTTCCCGCCCTGGAGCA < 41bp 0.490852567244731 0.710912503185302 0.23151022 0.292899 prediction 0.421825006370605 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47041617 chrX:47041620 synonymous SNV . 0 24 hm5C_associated_SNPs_124158 0 0 1 0 1 RBM10 chrX:47041561 3'AG 47041561 Downstream 60bp
chr19 11141426 11141426 1 + C T BLCA 11141425 + 11141405 11141445 41 GGAACCACGAAGGCGGAGGACCGGGGCATGCTGCTGAAAAC GGAACCACGAAGGCGGAGGACTGGGGCATGCTGCTGAAAAC < 41bp 0.471762444587924 0.710895382860928 0.90318 0.88513845 prediction 0.421790765721856 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141425 chr19:11141426 nonsynonymous SNV 0.992 5 22 hm5C_associated_SNPs_124166 0 0 1 0 1 SMARCA4 chr19:11141406 3'AG 11141406 Downstream 21bp
chr11 119027658 119027658 1 + T C rs115075339 119027655 + 119027635 119027675 41 GCTGTGCAGAATGGGCTGTGCGCTATGGCTGAGAAGAAGAG GCTGTGCAGAATGGGCTGTGCGCCATGGCTGAGAAGAAGAG < 41bp 0.479105981423277 0.710892174807077 0.075146705 0.046500385 prediction 0.421784349614154 Functional Gain - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119027655 chr11:119027658 synonymous SNV . 0 24 hm5C_associated_SNPs_124167 0 0 0 0 2 ABCG4 chr11:119027582 3'AG 119027582 Downstream 77bp
chr11 119027658 119027658 1 + T C rs115075339 119027655 + 119027635 119027675 41 GCTGTGCAGAATGGGCTGTGCGCTATGGCTGAGAAGAAGAG GCTGTGCAGAATGGGCTGTGCGCCATGGCTGAGAAGAAGAG < 41bp 0.479105981423277 0.710892174807077 0.075146705 0.046500385 prediction 0.421784349614154 Functional Gain - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119027655 chr11:119027658 synonymous SNV . 0 24 hm5C_associated_SNPs_124167 0 0 0 0 2 ABCG4 chr11:119027724 5'GT 119027724 Upstream 67bp
chr1 110169802 110169802 1 + C T SKCM 110169801 + 110169781 110169821 41 CTCCTCACCCCTGCAGATGCCCCGGTGCACCCCCCTGCGCT CTCCTCACCCCTGCAGATGCCTCGGTGCACCCCCCTGCGCT < 41bp 0.609684289457383 0.820573480064411 0.19694966 0.27060914 prediction 0.421778381214055 Functional Gain - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110169801 chr1:110169802 nonsynonymous SNV 0.996 0 22 hm5C_associated_SNPs_124168 0 0 1 0 1 AMPD2 chr1:110169797 3'AG 110169797 Downstream 6bp
chr17 80693613 80693613 1 + A G rs368552367 80693610 + 80693590 80693630 41 CGAGGGCCGAGCCTACGACACGGACGCAGGCCCAGTGTTCG CGAGGGCCGAGCCTACGACACGGGCGCAGGCCCAGTGTTCG < 41bp 0.591705345211304 0.802591829022334 0.27209067 0.7907443 prediction 0.421772967622061 Functional Gain - FN3K ENSG00000167363 CDS Human protein_coding chr17:80693610 chr17:80693613 nonsynonymous SNV 0.243 4 24 hm5C_associated_SNPs_124170 0 0 1 0 1 FN3K chr17:80693653 5'GT 80693653 Upstream 41bp
chr16 2577964 2577964 1 + C A UCEC 2577963 + 2577943 2577983 41 AGTGATCCGGGCGCTGACGGCCCGTGGCATCTGCGTGTCCC AGTGATCCGGGCGCTGACGGCACGTGGCATCTGCGTGTCCC < 41bp 0.440707459031066 0.710884201693675 0.44921976 0.8360585 prediction 0.421768403387349 Functional Gain - AMDHD2 ENSG00000162066 CDS Human protein_coding chr16:2577963 chr16:2577964 synonymous SNV . 0 22 hm5C_associated_SNPs_124172 0 0 1 0 1 AMDHD2 chr16:2577986 5'GT 2577986 Upstream 23bp
chr10 5498223 5498223 1 + T C rs77152706 5498220 + 5498200 5498240 41 GGCTCCTTTCGAGGAGCTTTCAGTAACTCAGAGAAAGGTAA GGCTCCTTTCGAGGAGCTTTCAGCAACTCAGAGAAAGGTAA < 41bp 0.530357151539928 0.741235134702759 0.16927484 0.33463353 prediction 0.421755966325662 Functional Gain - NET1 ENSG00000173848 CDS Human protein_coding chr10:5498220 chr10:5498223 synonymous SNV . 0 24 hm5C_associated_SNPs_124174 0 0 1 0 1 NET1 chr10:5498236 5'GT 5498236 Upstream 14bp
chrX 2712625 2712625 1 + C A LUAD 2712624 + 2712604 2712644 41 CGGACGCTACCCGCCCAGGCCCAGGCCACGGCCGCCTGCAG CGGACGCTACCCGCCCAGGCCAAGGCCACGGCCGCCTGCAG < 41bp 0.633758640717325 0.844635772535706 0.33549282 0.7479027 prediction 0.421754263636763 Functional Gain - XG ENSG00000124343 CDS Human protein_coding chrX:2712624 chrX:2712625 synonymous SNV . 0 22 hm5C_associated_SNPs_124175 0 0 0 0 2 XG chrX:2712576 3'AG 2712576 Downstream 50bp
chrX 2712625 2712625 1 + C A LUAD 2712624 + 2712604 2712644 41 CGGACGCTACCCGCCCAGGCCCAGGCCACGGCCGCCTGCAG CGGACGCTACCCGCCCAGGCCAAGGCCACGGCCGCCTGCAG < 41bp 0.633758640717325 0.844635772535706 0.33549282 0.7479027 prediction 0.421754263636763 Functional Gain - XG ENSG00000124343 CDS Human protein_coding chrX:2712624 chrX:2712625 synonymous SNV . 0 22 hm5C_associated_SNPs_124175 0 0 0 0 2 XG chrX:2712644 5'GT 2712644 Upstream 20bp
chr20 30662458 30662458 1 + C A LUAD 30662454 + 30662434 30662474 41 AGTGGTGGAAGGCTCGATCCCTGGCCACCCGGAAGGAGGGC AGTGGTGGAAGGCTCGATCCCTGGACACCCGGAAGGAGGGC < 41bp 0.7348878237405 0.945761405410758 0.10336405 0.21565211 prediction 0.421747163340515 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30662454 chr20:30662458 nonsynonymous SNV 0.793 0 25 hm5C_associated_SNPs_124176 0 0 0 0 2 HCK chr20:30662426 3'AG 30662426 Downstream 33bp
chr20 30662458 30662458 1 + C A LUAD 30662454 + 30662434 30662474 41 AGTGGTGGAAGGCTCGATCCCTGGCCACCCGGAAGGAGGGC AGTGGTGGAAGGCTCGATCCCTGGACACCCGGAAGGAGGGC < 41bp 0.7348878237405 0.945761405410758 0.10336405 0.21565211 prediction 0.421747163340515 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30662454 chr20:30662458 nonsynonymous SNV 0.793 0 25 hm5C_associated_SNPs_124176 0 0 0 0 2 HCK chr20:30662524 5'GT 30662524 Upstream 67bp
chr7 6441557 6441557 1 + A G HNSC 6441554 + 6441534 6441574 41 TCCCATCATCCTAGTGGGAACTAAACTTGATCTTAGGGATG TCCCATCATCCTAGTGGGAACTAGACTTGATCTTAGGGATG < 41bp 0.467637823746293 0.710872597874721 0.07576692 0.11774802 prediction 0.421745195749443 Functional Gain - RAC1 ENSG00000136238 CDS Human protein_coding chr7:6441554 chr7:6441557 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_124177 0 0 1 0 1 RAC1 chr7:6441499 3'AG 6441499 Downstream 59bp
chr16 5127460 5127460 1 + T G rs112668461 5127458 + 5127438 5127478 41 CTTTTCAGGTACGAGAAGTTCTTTGGGCGCCTGTCCCACCT CTTTTCAGGTACGAGAAGTTCTGTGGGCGCCTGTCCCACCT < 41bp 0.351645185979249 0.710867111314994 0.32364368 0.46733117 prediction 0.421734222629988 Functional Gain - ALG1 ENSG00000033011 CDS Human protein_coding chr16:5127458 chr16:5127460 nonsynonymous SNV 0.561 1 23 hm5C_associated_SNPs_124182 1 0 1 0 2 ALG1 chr16:5127446 3'AG 5127446 Downstream 15bp
chr16 5127460 5127460 1 + T G rs112668461 5127458 + 5127438 5127478 41 CTTTTCAGGTACGAGAAGTTCTTTGGGCGCCTGTCCCACCT CTTTTCAGGTACGAGAAGTTCTGTGGGCGCCTGTCCCACCT < 41bp 0.351645185979249 0.710867111314994 0.32364368 0.46733117 prediction 0.421734222629988 Functional Gain - ALG1 ENSG00000033011 CDS Human protein_coding chr16:5127458 chr16:5127460 nonsynonymous SNV 0.561 1 23 hm5C_associated_SNPs_124182 1 0 1 0 2 ALG1 chr16:5127535 5'GT 5127535 Upstream 76bp
chr5 10262653 10262653 1 + C A GBM 10262652 + 10262632 10262672 41 TGTGTCATCCGGAACCTCATCCGCGATAATCGTGTGGTGTA TGTGTCATCCGGAACCTCATCAGCGATAATCGTGTGGTGTA < 41bp 0.624133987519102 0.834994289440623 0.34301177 0.36242777 prediction 0.421720603843041 Functional Gain - CCT5 ENSG00000150753 CDS Human protein_coding chr5:10262652 chr5:10262653 nonsynonymous SNV 0.972 2 22 hm5C_associated_SNPs_124183 0 0 1 0 2 CCT5 chr5:10262593 3'AG 10262593 Downstream 61bp
chr5 10262653 10262653 1 + C A GBM 10262652 + 10262632 10262672 41 TGTGTCATCCGGAACCTCATCCGCGATAATCGTGTGGTGTA TGTGTCATCCGGAACCTCATCAGCGATAATCGTGTGGTGTA < 41bp 0.624133987519102 0.834994289440623 0.34301177 0.36242777 prediction 0.421720603843041 Functional Gain - CCT5 ENSG00000150753 CDS Human protein_coding chr5:10262652 chr5:10262653 nonsynonymous SNV 0.972 2 22 hm5C_associated_SNPs_124183 0 0 1 0 2 CCT5 chr5:10262730 5'GT 10262730 Upstream 78bp
chr11 59560935 59560935 1 + T C PAAD 59560933 + 59560913 59560953 41 ATTGTGAGGCTGGAGAGCAGCATCAAGGAGCTTCACGACAT ATTGTGAGGCTGGAGAGCAGCACCAAGGAGCTTCACGACAT < 41bp 0.669804793004733 0.88064778739003 0.1126689 0.08578405 prediction 0.421685988770594 Functional Gain - STX3 ENSG00000166900 CDS Human protein_coding chr11:59560933 chr11:59560935 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_124188 0 0 1 0 2 STX3 chr11:59560853 3'AG 59560853 Downstream 83bp
chr11 59560935 59560935 1 + T C PAAD 59560933 + 59560913 59560953 41 ATTGTGAGGCTGGAGAGCAGCATCAAGGAGCTTCACGACAT ATTGTGAGGCTGGAGAGCAGCACCAAGGAGCTTCACGACAT < 41bp 0.669804793004733 0.88064778739003 0.1126689 0.08578405 prediction 0.421685988770594 Functional Gain - STX3 ENSG00000166900 CDS Human protein_coding chr11:59560933 chr11:59560935 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_124188 0 0 1 0 2 STX3 chr11:59560987 5'GT 59560987 Upstream 53bp
chr12 31116860 31116860 1 + T A LUSC 31116856 + 31116836 31116876 41 TCCAGCACCTTTGCCGCCTCCGCCTACATCCTCATCTTTGC TCCAGCACCTTTGCCGCCTCCGCCAACATCCTCATCTTTGC < 41bp 0.34965872042954 0.710841195395535 0.12411544 0.29194495 prediction 0.421682390791071 Functional Gain - TSPAN11 ENSG00000110900 CDS Human protein_coding chr12:31116856 chr12:31116860 nonsynonymous SNV 0.984 3 25 hm5C_associated_SNPs_124189 0 0 0 0 2 TSPAN11 chr12:31116761 3'AG 31116761 Downstream 100bp
chr12 31116860 31116860 1 + T A LUSC 31116856 + 31116836 31116876 41 TCCAGCACCTTTGCCGCCTCCGCCTACATCCTCATCTTTGC TCCAGCACCTTTGCCGCCTCCGCCAACATCCTCATCTTTGC < 41bp 0.34965872042954 0.710841195395535 0.12411544 0.29194495 prediction 0.421682390791071 Functional Gain - TSPAN11 ENSG00000110900 CDS Human protein_coding chr12:31116856 chr12:31116860 nonsynonymous SNV 0.984 3 25 hm5C_associated_SNPs_124189 0 0 0 0 2 TSPAN11 chr12:31116952 5'GT 31116952 Upstream 93bp
chr16 304613 304613 1 + A G LUSC 304610 + 304590 304630 41 CTTTTTGTGGTGTTCGTCGTCTCATTCGTCATCCCGTGTCC CTTTTTGTGGTGTTCGTCGTCTCGTTCGTCATCCCGTGTCC < 41bp 0.454799396180585 0.710839617328717 0.06648293 0.12830544 prediction 0.421679234657433 Functional Gain - FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:304610 chr16:304613 synonymous SNV . 0 24 hm5C_associated_SNPs_124191 0 0 1 0 1 FAM234A chr16:304680 5'GT 304680 Upstream 68bp
chr3 14170930 14170930 1 + C T UCEC 14170929 + 14170909 14170949 41 CAGTATTCCAGTACCAGTACCCGGAGAGAACATGTCAAAGT CAGTATTCCAGTACCAGTACCTGGAGAGAACATGTCAAAGT < 41bp 0.457376617390717 0.710836624687766 0.88771486 0.22710052 prediction 0.421673249375532 Functional Gain - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14170929 chr3:14170930 nonsynonymous SNV 0.319 3 22 hm5C_associated_SNPs_124192 0 0 1 0 1 TMEM43 chr3:14170912 3'AG 14170912 Downstream 19bp
chr1 115430307 115430307 1 + T A OV 115430303 + 115430283 115430323 41 CATGGAGCTTCAAAAGAAATCAAGTGAGCTGGGTAAGACTT CATGGAGCTTCAAAAGAAATCAAGAGAGCTGGGTAAGACTT < 41bp 0.427484899916727 0.710831301470357 0.12318158 0.4006577 prediction 0.421662602940714 Functional Gain - SYCP1 ENSG00000198765 CDS Human protein_coding chr1:115430303 chr1:115430307 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_124194 0 0 0 0 2 SYCP1 chr1:115430247 3'AG 115430247 Downstream 61bp
chr1 115430307 115430307 1 + T A OV 115430303 + 115430283 115430323 41 CATGGAGCTTCAAAAGAAATCAAGTGAGCTGGGTAAGACTT CATGGAGCTTCAAAAGAAATCAAGAGAGCTGGGTAAGACTT < 41bp 0.427484899916727 0.710831301470357 0.12318158 0.4006577 prediction 0.421662602940714 Functional Gain - SYCP1 ENSG00000198765 CDS Human protein_coding chr1:115430303 chr1:115430307 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_124194 0 0 0 0 2 SYCP1 chr1:115430314 5'GT 115430314 Upstream 8bp
chr19 3449072 3449072 1 + C T COAD 3449071 + 3449051 3449091 41 CACCATTCAACAGCCCGTCCCCCCAGGACTCTCCCCGCCTC CACCATTCAACAGCCCGTCCCTCCAGGACTCTCCCCGCCTC < 41bp 0.414895169380859 0.710830339101993 0.11825454 0.9527115 prediction 0.421660678203986 Functional Gain - NFIC ENSG00000141905 CDS Human protein_coding chr19:3449071 chr19:3449072 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_124195 0 0 1 0 2 NFIC chr19:3449012 3'AG 3449012 Downstream 61bp
chr19 3449072 3449072 1 + C T COAD 3449071 + 3449051 3449091 41 CACCATTCAACAGCCCGTCCCCCCAGGACTCTCCCCGCCTC CACCATTCAACAGCCCGTCCCTCCAGGACTCTCCCCGCCTC < 41bp 0.414895169380859 0.710830339101993 0.11825454 0.9527115 prediction 0.421660678203986 Functional Gain - NFIC ENSG00000141905 CDS Human protein_coding chr19:3449071 chr19:3449072 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_124195 0 0 1 0 2 NFIC chr19:3449137 5'GT 3449137 Upstream 66bp
chr8 27402020 27402020 1 + C T rs4987060 27402019 + 27401999 27402039 41 ATTCTGATGCCCGGAACCCACCGGTGGTCTCAAAGATGTAG ATTCTGATGCCCGGAACCCACTGGTGGTCTCAAAGATGTAG < 41bp 0.566487488334338 0.777309744756015 0.20009068 0.20048586 prediction 0.421644512843353 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27402019 chr8:27402020 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_124197 0 0 1 0 1 EPHX2 chr8:27401961 3'AG 27401961 Downstream 60bp
chr6 26406179 26406179 1 + T C OV 26406177 + 26406157 26406197 41 CCCTCTGGGCCCATCCTGGCCATGGTGGGTGAAGACGCTGA CCCTCTGGGCCCATCCTGGCCACGGTGGGTGAAGACGCTGA < 41bp 0.632436812682776 0.843258921110199 0.683872 0.58929217 prediction 0.421644216854846 Functional Gain - BTN3A1 ENSG00000026950 CDS Human protein_coding chr6:26406177 chr6:26406179 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_124198 0 0 0 0 1 BTN3A1 chr6:26406137 3'AG 26406137 Downstream 43bp
chr17 70117908 70117908 1 + C T BRCA 70117907 + 70117887 70117927 41 GCGCGCAGGAAGCTCGCGGACCAGTACCCGCACTTGCACAA GCGCGCAGGAAGCTCGCGGACTAGTACCCGCACTTGCACAA < 41bp 0.471857031236166 0.71082122272403 0.3026201 0.23807377 prediction 0.421642445448059 Functional Gain - SOX9 ENSG00000125398 CDS Human protein_coding chr17:70117907 chr17:70117908 stopgain 0.480 0 22 hm5C_associated_SNPs_124199 0 0 1 0 1 SOX9 chr17:70117963 5'GT 70117963 Upstream 56bp
chr8 1514009 1514009 1 + C A rs2301963 1514008 + 1513988 1514028 41 CACCAAAGTCGGCAATCCTACCAGAGCCGCTGCTGAAGTCC CACCAAAGTCGGCAATCCTACAAGAGCCGCTGCTGAAGTCC < 41bp 0.439734838695812 0.710820307021236 0.33951485 0.39626944 prediction 0.421640614042473 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1514008 chr8:1514009 nonsynonymous SNV 0.007 2 22 hm5C_associated_SNPs_124200 0 0 0 0 1 DLGAP2 chr8:1514060 5'GT 1514060 Upstream 52bp
chr16 2514159 2514159 1 + C T SKCM 2514158 + 2514138 2514178 41 CTGCTTGTCTACTCCAGCACCCAGGAGCTGCAGACCCTGGC CTGCTTGTCTACTCCAGCACCTAGGAGCTGCAGACCCTGGC < 41bp 0.471584949985577 0.710818755434748 0.1709159 0.106615365 prediction 0.421637510869497 Functional Gain - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2514158 chr16:2514159 stopgain 0.887 0 22 hm5C_associated_SNPs_124201 0 0 1 0 2 C16orf59 chr16:2514155 3'AG 2514155 Downstream 5bp
chr16 2514159 2514159 1 + C T SKCM 2514158 + 2514138 2514178 41 CTGCTTGTCTACTCCAGCACCCAGGAGCTGCAGACCCTGGC CTGCTTGTCTACTCCAGCACCTAGGAGCTGCAGACCCTGGC < 41bp 0.471584949985577 0.710818755434748 0.1709159 0.106615365 prediction 0.421637510869497 Functional Gain - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2514158 chr16:2514159 stopgain 0.887 0 22 hm5C_associated_SNPs_124201 0 0 1 0 2 C16orf59 chr16:2514230 5'GT 2514230 Upstream 72bp
chr1 207300089 207300089 1 + T A BLCA 207300087 + 207300067 207300107 41 GTCGCAAGCCAGATGTTTCACATGGGGAAATGGTCTCTGGA GTCGCAAGCCAGATGTTTCACAAGGGGAAATGGTCTCTGGA < 41bp 0.506044993733671 0.716854634809997 0.39622065 0.91016877 prediction 0.421619282152651 Functional Gain - C4BPA ENSG00000123838 CDS Human protein_coding chr1:207300087 chr1:207300089 nonsynonymous SNV 0.020 0 23 hm5C_associated_SNPs_124209 0 0 0 0 1 C4BPA chr1:207300058 3'AG 207300058 Downstream 32bp
chr20 5904676 5904676 1 + C A COAD 5904675 + 5904655 5904695 41 ACTTCTATGATTCTGAGGAGCCGGTGAGCACCCACCAGGAG ACTTCTATGATTCTGAGGAGCAGGTGAGCACCCACCAGGAG < 41bp 0.451145842627209 0.710808571466277 0.8740595 0.9095621 prediction 0.421617142932553 Functional Gain - CHGB ENSG00000089199 CDS Human protein_coding chr20:5904675 chr20:5904676 nonsynonymous SNV 0.452 0 22 hm5C_associated_SNPs_124210 0 0 1 0 1 CHGB chr20:5904746 5'GT 5904746 Upstream 71bp
chr20 61597896 61597896 1 + C T UCEC 61597895 + 61597875 61597915 41 AGTGGCATTTCTGTTAACATCCAGGACTTGGCCCCGTCCTG AGTGGCATTTCTGTTAACATCTAGGACTTGGCCCCGTCCTG < 41bp 0.599995648970827 0.810801532409066 0.41122317 0.24588326 prediction 0.421611766876478 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61597895 chr20:61597896 stopgain 0.982 1 22 hm5C_associated_SNPs_124211 0 0 1 0 2 SLC17A9 chr20:61597877 3'AG 61597877 Downstream 20bp
chr20 61597896 61597896 1 + C T UCEC 61597895 + 61597875 61597915 41 AGTGGCATTTCTGTTAACATCCAGGACTTGGCCCCGTCCTG AGTGGCATTTCTGTTAACATCTAGGACTTGGCCCCGTCCTG < 41bp 0.599995648970827 0.810801532409066 0.41122317 0.24588326 prediction 0.421611766876478 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61597895 chr20:61597896 stopgain 0.982 1 22 hm5C_associated_SNPs_124211 0 0 1 0 2 SLC17A9 chr20:61597932 5'GT 61597932 Upstream 37bp
chr18 8394487 8394487 1 + C T STAD 8394486 + 8394466 8394506 41 CACGACAGGAACGGGGGAGGCCGCAGTGGGACGTTCTGCGC CACGACAGGAACGGGGGAGGCTGCAGTGGGACGTTCTGCGC < 41bp 0.503928954355863 0.714732882323885 0.90005744 0.9078002 prediction 0.421607855936043 Functional Gain - PTPRM ENSG00000173482 CDS Human protein_coding chr18:8394486 chr18:8394487 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_124213 0 0 1 0 1 PTPRM chr18:8394474 3'AG 8394474 Downstream 14bp
chr10 88419067 88419067 1 + C T STAD 88419066 + 88419046 88419086 41 GCTCCCAGGCGCCTACGTGCCCGAGGGGTTGCTGACATCCT GCTCCCAGGCGCCTACGTGCCTGAGGGGTTGCTGACATCCT < 41bp 0.586947956232837 0.797751155662792 0.24932587 0.173816 prediction 0.42160639885991 Functional Gain - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88419066 chr10:88419067 synonymous SNV . 0 22 hm5C_associated_SNPs_124214 0 0 0 0 1 OPN4 chr10:88419054 3'AG 88419054 Downstream 14bp
chr1 36552585 36552585 1 + C G rs142723316 36552581 + 36552561 36552601 41 TCAGTCGGTTCAACAAGGACCGAGCGGAGGCTGAGATGAAG TCAGTCGGTTCAACAAGGACCGAGGGGAGGCTGAGATGAAG < 41bp 0.416214906381643 0.710797656093508 0.70978457 0.88480747 prediction 0.421595312187015 Functional Gain - TEKT2 ENSG00000092850 CDS Human protein_coding chr1:36552581 chr1:36552585 nonsynonymous SNV 0.274 0 25 hm5C_associated_SNPs_124217 0 0 0 0 2 TEKT2 chr1:36552532 3'AG 36552532 Downstream 54bp
chr1 36552585 36552585 1 + C G rs142723316 36552581 + 36552561 36552601 41 TCAGTCGGTTCAACAAGGACCGAGCGGAGGCTGAGATGAAG TCAGTCGGTTCAACAAGGACCGAGGGGAGGCTGAGATGAAG < 41bp 0.416214906381643 0.710797656093508 0.70978457 0.88480747 prediction 0.421595312187015 Functional Gain - TEKT2 ENSG00000092850 CDS Human protein_coding chr1:36552581 chr1:36552585 nonsynonymous SNV 0.274 0 25 hm5C_associated_SNPs_124217 0 0 0 0 2 TEKT2 chr1:36552646 5'GT 36552646 Upstream 62bp
chr17 47218739 47218739 1 + C T SARC 47218738 + 47218718 47218758 41 CCAGAACTCCCAAGTCCTGCCCCGGGTGTCCAGAAGCTGAA CCAGAACTCCCAAGTCCTGCCTCGGGTGTCCAGAAGCTGAA < 41bp 0.612136791957311 0.822930271677386 0.17751658 0.102154315 prediction 0.42158695944015 Functional Gain - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47218738 chr17:47218739 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_124219 0 0 0 0 1 B4GALNT2 chr17:47218809 5'GT 47218809 Upstream 71bp
chr1 53581837 53581837 1 + C A rs551633862 53581836 + 53581816 53581856 41 CGTGAACACCGGCCCCCTCCCCCAGCGGGAGCCACCGCCTG CGTGAACACCGGCCCCCTCCCACAGCGGGAGCCACCGCCTG < 41bp 0.605224003170985 0.816015880907612 0.29951733 0.3772447 prediction 0.421583755473255 Functional Gain - SLC1A7 ENSG00000235563 ncRNA_exonic Human antisense chr1:53581836 chr1:53581837 . . 0 22 hm5C_associated_SNPs_124220 0 0 0 0 1 SLC1A7 chr1:53581904 5'GT 53581904 Upstream 68bp
chr4 109088716 109088716 1 - G C LUSC 109088720 - 109088700 109088740 41 GAAATCATCCCGGCCAGCAACGGACACGAGGTGAGCGGGCC GAAATCATCCCGGCCAGCAACGGAGACGAGGTGAGCGGGCC < 41bp 0.412257179782811 0.710781339007018 0.6365158 0.913129 prediction 0.421562678014036 Functional Gain - LEF1 ENSG00000138795 CDS Human protein_coding chr4:109088720 chr4:109088716 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_124223 0 0 0 0 1 LEF1 chr4:109088711 5'GT 109088711 Upstream 6bp
chr7 141443725 141443725 1 + T C COAD 141443723 + 141443703 141443743 41 TGATGTCAGTCAAAAGACAACATGGCACAGAATATCAGTAT TGATGTCAGTCAAAAGACAACACGGCACAGAATATCAGTAT < 41bp 0.438635420910085 0.710780215264784 0.044197947 0.022497922 prediction 0.421560430529568 Functional Gain - SSBP1 ENSG00000106028 CDS Human protein_coding chr7:141443723 chr7:141443725 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_124224 0 0 1 0 2 SSBP1 chr7:141443702 3'AG 141443702 Downstream 24bp
chr7 141443725 141443725 1 + T C COAD 141443723 + 141443703 141443743 41 TGATGTCAGTCAAAAGACAACATGGCACAGAATATCAGTAT TGATGTCAGTCAAAAGACAACACGGCACAGAATATCAGTAT < 41bp 0.438635420910085 0.710780215264784 0.044197947 0.022497922 prediction 0.421560430529568 Functional Gain - SSBP1 ENSG00000106028 CDS Human protein_coding chr7:141443723 chr7:141443725 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_124224 0 0 1 0 2 SSBP1 chr7:141443789 5'GT 141443789 Upstream 65bp
chr4 186231849 186231849 1 + T C COAD 186231847 + 186231827 186231867 41 GCCAGGAACATGAAGAGGTACATCAACCAACTGACTGTGGC GCCAGGAACATGAAGAGGTACACCAACCAACTGACTGTGGC < 41bp 0.401626692382858 0.710779265201902 0.09594685 0.11844656 prediction 0.421558530403803 Functional Gain - SNX25 ENSG00000109762 CDS Human protein_coding chr4:186231847 chr4:186231849 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_124225 0 0 1 0 1 SNX25 chr4:186231789 3'AG 186231789 Downstream 61bp
chr11 47256210 47256210 1 + T C STAD 47256208 + 47256188 47256228 41 GGGAACGTGATCCTGCTGAACATGGACGGCAAAGAGGTGCG GGGAACGTGATCCTGCTGAACACGGACGGCAAAGAGGTGCG < 41bp 0.60485452203571 0.815629662992265 0.28404158 0.3015244 prediction 0.421550281913111 Functional Gain - DDB2 ENSG00000134574 CDS Human protein_coding chr11:47256208 chr11:47256210 nonsynonymous SNV 0.972 0 23 hm5C_associated_SNPs_124228 0 0 1 0 2 DDB2 chr11:47256124 3'AG 47256124 Downstream 87bp
chr11 47256210 47256210 1 + T C STAD 47256208 + 47256188 47256228 41 GGGAACGTGATCCTGCTGAACATGGACGGCAAAGAGGTGCG GGGAACGTGATCCTGCTGAACACGGACGGCAAAGAGGTGCG < 41bp 0.60485452203571 0.815629662992265 0.28404158 0.3015244 prediction 0.421550281913111 Functional Gain - DDB2 ENSG00000134574 CDS Human protein_coding chr11:47256208 chr11:47256210 nonsynonymous SNV 0.972 0 23 hm5C_associated_SNPs_124228 0 0 1 0 2 DDB2 chr11:47256223 5'GT 47256223 Upstream 14bp
chr13 26586758 26586758 1 + C T UCEC 26586757 + 26586737 26586777 41 GCTCCCTGCAGCAGGGCGTCCCGCGTGAGTACCGCGGGCGG GCTCCCTGCAGCAGGGCGTCCTGCGTGAGTACCGCGGGCGG < 41bp 0.50290745692986 0.713680115631159 0.85311157 0.7423593 prediction 0.421545317402598 Functional Gain - ATP8A2 ENSG00000132932 CDS Human protein_coding chr13:26586757 chr13:26586758 nonsynonymous SNV 0.180 0 22 hm5C_associated_SNPs_124230 0 0 0 0 2 ATP8A2 chr13:26586669 3'AG 26586669 Downstream 90bp
chr13 26586758 26586758 1 + C T UCEC 26586757 + 26586737 26586777 41 GCTCCCTGCAGCAGGGCGTCCCGCGTGAGTACCGCGGGCGG GCTCCCTGCAGCAGGGCGTCCTGCGTGAGTACCGCGGGCGG < 41bp 0.50290745692986 0.713680115631159 0.85311157 0.7423593 prediction 0.421545317402598 Functional Gain - ATP8A2 ENSG00000132932 CDS Human protein_coding chr13:26586757 chr13:26586758 nonsynonymous SNV 0.180 0 22 hm5C_associated_SNPs_124230 0 0 0 0 2 ATP8A2 chr13:26586760 5'GT 26586760 Upstream 3bp
chr17 32961879 32961879 1 + C A BLCA 32961878 + 32961858 32961898 41 GAGCGGCGGCAGAGTGCAAGCCGTGGCTGCACCCTGCAGTA GAGCGGCGGCAGAGTGCAAGCAGTGGCTGCACCCTGCAGTA < 41bp 0.441630453677097 0.710765753912494 0.8824042 0.7876457 prediction 0.421531507824987 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32961878 chr17:32961879 nonsynonymous SNV 0.203 4 22 hm5C_associated_SNPs_124233 0 0 0 0 1 TMEM132E chr17:32961818 3'AG 32961818 Downstream 62bp
chr17 61574518 61574518 1 + C T HNSC 61574517 + 61574497 61574537 41 GCTCGCTCAGAAGGGCCCCTCCCAGACAGCGGCCGCGTCAG GCTCGCTCAGAAGGGCCCCTCTCAGACAGCGGCCGCGTCAG < 41bp 0.576634333635884 0.787399576976679 0.17616445 0.23027667 prediction 0.42153048668159 Functional Gain - ACE ENSG00000159640 CDS Human protein_coding chr17:61574517 chr17:61574518 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_124234 0 0 0 0 1 ACE chr17:61574498 3'AG 61574498 Downstream 21bp
chr5 82789433 82789433 1 + T G KIRC 82789431 + 82789411 82789451 41 TTTTGAGGCTGCTCAGAAGGCTTGTTTGGACGTTGGGGCAG TTTTGAGGCTGCTCAGAAGGCTGGTTTGGACGTTGGGGCAG < 41bp 0.379087823204184 0.710735954869009 0.12308398 0.21269804 prediction 0.421471909738018 Functional Gain - VCAN ENSG00000038427 CDS Human protein_coding chr5:82789431 chr5:82789433 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_124240 0 0 1 0 1 VCAN chr5:82789365 3'AG 82789365 Downstream 69bp
chr19 36207421 36207421 1 + C A SKCM 36207420 + 36207400 36207440 41 AGCCTTTGTCCTCAGCGCTCCCGGGACTTCTCGGCCATGAC AGCCTTTGTCCTCAGCGCTCCAGGGACTTCTCGGCCATGAC < 41bp 0.454355667769594 0.710734759288446 0.92067826 0.925226 prediction 0.421469518576891 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36207420 chr19:36207421 synonymous SNV . 0 22 hm5C_associated_SNPs_124241 0 0 0 0 1 ZBTB32 chr19:36207380 3'AG 36207380 Downstream 42bp
chr19 8528506 8528506 1 + T A KIRC 8528504 + 8528484 8528524 41 GAATTCAAGATGGAAGAGAGCATGAAAAAAGCTGCGGAAGT GAATTCAAGATGGAAGAGAGCAAGAAAAAAGCTGCGGAAGT < 41bp 0.514155836871765 0.724890435931012 0.090596974 0.8840851 prediction 0.421469198118493 Functional Gain - HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8528504 chr19:8528506 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_124242 0 0 1 0 1 HNRNPM chr19:8528570 5'GT 8528570 Upstream 65bp
chr1 174975972 174975972 1 + A G rs1802325 174975969 + 174975949 174975989 41 GAGAATGTGCAGGTGCATTTCACAGAGAGGTGAGTTCTCAT GAGAATGTGCAGGTGCATTTCACGGAGAGGTGAGTTCTCAT < 41bp 0.575221196629485 0.785952250052433 0.047115654 0.23648542 prediction 0.421462106845895 Functional Gain - CACYBP ENSG00000116161 CDS Human protein_coding chr1:174975969 chr1:174975972 synonymous SNV . 0 24 hm5C_associated_SNPs_124245 0 0 1 0 2 CACYBP chr1:174975881 3'AG 174975881 Downstream 92bp
chr1 174975972 174975972 1 + A G rs1802325 174975969 + 174975949 174975989 41 GAGAATGTGCAGGTGCATTTCACAGAGAGGTGAGTTCTCAT GAGAATGTGCAGGTGCATTTCACGGAGAGGTGAGTTCTCAT < 41bp 0.575221196629485 0.785952250052433 0.047115654 0.23648542 prediction 0.421462106845895 Functional Gain - CACYBP ENSG00000116161 CDS Human protein_coding chr1:174975969 chr1:174975972 synonymous SNV . 0 24 hm5C_associated_SNPs_124245 0 0 1 0 2 CACYBP chr1:174975977 5'GT 174975977 Upstream 6bp
chr11 113815451 113815451 1 + C A UCEC 113815450 + 113815430 113815470 41 CTGACAGGCCTAGAGTGGAACCCAGGGCCCAACGTGCTGTG CTGACAGGCCTAGAGTGGAACACAGGGCCCAACGTGCTGTG < 41bp 0.437628833369576 0.710725301112229 0.12443471 0.06326479 prediction 0.421450602224457 Functional Gain - HTR3B ENSG00000149305 CDS Human protein_coding chr11:113815450 chr11:113815451 nonsynonymous SNV 0.028 0 22 hm5C_associated_SNPs_124247 0 0 0 0 1 HTR3B chr11:113815477 5'GT 113815477 Upstream 27bp
chr20 61455825 61455825 1 + C A LUAD 61455824 + 61455804 61455844 41 GTATCTGCCCGCCAGGTCCCCCAGGGCCCCCTGGAATGCCA GTATCTGCCCGCCAGGTCCCCAAGGGCCCCCTGGAATGCCA < 41bp 0.435178238838282 0.710720602564853 0.5105059 0.8948935 prediction 0.421441205129706 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61455824 chr20:61455825 nonsynonymous SNV 0.073 4 22 hm5C_associated_SNPs_124249 0 0 1 0 2 COL9A3 chr20:61455797 3'AG 61455797 Downstream 29bp
chr20 61455825 61455825 1 + C A LUAD 61455824 + 61455804 61455844 41 GTATCTGCCCGCCAGGTCCCCCAGGGCCCCCTGGAATGCCA GTATCTGCCCGCCAGGTCCCCAAGGGCCCCCTGGAATGCCA < 41bp 0.435178238838282 0.710720602564853 0.5105059 0.8948935 prediction 0.421441205129706 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61455824 chr20:61455825 nonsynonymous SNV 0.073 4 22 hm5C_associated_SNPs_124249 0 0 1 0 2 COL9A3 chr20:61455853 5'GT 61455853 Upstream 29bp
chr19 44103069 44103069 1 + C G BLCA 44103068 + 44103048 44103088 41 CGTCACATGAAGCGGGAGCACCCAGCGGACTTCGTGGCCCA CGTCACATGAAGCGGGAGCACGCAGCGGACTTCGTGGCCCA < 41bp 0.396287786105111 0.71071875795415 0.33423424 0.5786818 prediction 0.421437515908299 Functional Gain - ZNF576 ENSG00000124444 CDS Human protein_coding chr19:44103068 chr19:44103069 nonsynonymous SNV 0.974 2 22 hm5C_associated_SNPs_124251 0 0 1 0 1 ZNF576 chr19:44102983 3'AG 44102983 Downstream 87bp
chr10 104159894 104159894 1 + T C UCEC 104159891 + 104159871 104159911 41 AGTGTCATTGAGCAGATAGTCTATGTCATCCACCACGCCCA AGTGTCATTGAGCAGATAGTCTACGTCATCCACCACGCCCA < 41bp 0.494843641729305 0.710718359950589 0.1377657 0.14376119 prediction 0.421436719901178 Functional Gain - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104159891 chr10:104159894 synonymous SNV . 0 24 hm5C_associated_SNPs_124253 0 0 1 0 2 NFKB2 chr10:104159837 3'AG 104159837 Downstream 58bp
chr10 104159894 104159894 1 + T C UCEC 104159891 + 104159871 104159911 41 AGTGTCATTGAGCAGATAGTCTATGTCATCCACCACGCCCA AGTGTCATTGAGCAGATAGTCTACGTCATCCACCACGCCCA < 41bp 0.494843641729305 0.710718359950589 0.1377657 0.14376119 prediction 0.421436719901178 Functional Gain - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104159891 chr10:104159894 synonymous SNV . 0 24 hm5C_associated_SNPs_124253 0 0 1 0 2 NFKB2 chr10:104159951 5'GT 104159951 Upstream 58bp
chrX 155239504 155239504 1 + C A rs185762509 155239503 + 155239483 155239523 41 TTGGATGGGGGCCCACGGGGCCGGTGTGCTGTTGAGCCAGG TTGGATGGGGGCCCACGGGGCAGGTGTGCTGTTGAGCCAGG < 41bp 0.455899181699561 0.710715140039763 0.7493364 0.8610506 prediction 0.421430280079527 Functional Gain - IL9R ENSG00000124334 CDS Human protein_coding chrX:155239503 chrX:155239504 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_124255 0 0 0 0 1 IL9R chrX:155239481 3'AG 155239481 Downstream 24bp
chr22 42095658 42095658 1 + T G rs147348682 42095656 + 42095636 42095676 41 GACCCGCGCTGGCTGCTGCCCGTGACCCCCCGCCTGTGCCT GACCCGCGCTGGCTGCTGCCCGGGACCCCCCGCCTGTGCCT < 41bp 0.701198626867028 0.911913668953911 0.75819576 0.93905413 prediction 0.421430084173767 Functional Gain - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42095656 chr22:42095658 nonsynonymous SNV 0.575 0 23 hm5C_associated_SNPs_124256 0 0 0 0 1 MEI1 chr22:42095716 5'GT 42095716 Upstream 59bp
chr19 41822663 41822663 1 + C T STAD 41822662 + 41822642 41822682 41 TTCTACTGTGCTGAGGTGGCCCGGCAGGGCACTGCCCGGCC TTCTACTGTGCTGAGGTGGCCTGGCAGGGCACTGCCCGGCC < 41bp 0.471576048346769 0.710707082091103 0.104028404 0.19784462 prediction 0.421414164182206 Functional Gain - CCDC97 ENSG00000142039 CDS Human protein_coding chr19:41822662 chr19:41822663 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_124260 0 0 1 0 1 CCDC97 chr19:41822744 5'GT 41822744 Upstream 82bp
chrX 103434328 103434328 1 + C T STAD 103434327 + 103434307 103434347 41 AAGTTACAGCAGAAGGCCTTCCGCAAGAGGCAGCTGAAGGA AAGTTACAGCAGAAGGCCTTCTGCAAGAGGCAGCTGAAGGA < 41bp 0.612322357925505 0.823016975603335 0.2367262 0.1996266 prediction 0.421389235355659 Functional Gain - FAM199X ENSG00000123575 CDS Human protein_coding chrX:103434327 chrX:103434328 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_124263 0 0 1 0 1 FAM199X chrX:103434289 3'AG 103434289 Downstream 40bp
chr1 9661445 9661445 1 + C T UCEC 9661444 + 9661424 9661464 41 TGGGCCTTTGGGCAGAGCCACCAGACGGGCGTCGTGGCACT TGGGCCTTTGGGCAGAGCCACTAGACGGGCGTCGTGGCACT < 41bp 0.449563209107384 0.710677441859263 0.5869638 0.78917444 prediction 0.421354883718525 Functional Gain - TMEM201 ENSG00000188807 CDS Human protein_coding chr1:9661444 chr1:9661445 stopgain 0.966 1 22 hm5C_associated_SNPs_124265 0 0 1 0 1 TMEM201 chr1:9661512 5'GT 9661512 Upstream 68bp
chr7 144068341 144068341 1 + C T SKCM 144068340 + 144068320 144068360 41 TTCCAACTTTCAACTTCACTCCGGGCCACACTTTCCAACCA TTCCAACTTTCAACTTCACTCTGGGCCACACTTTCCAACCA < 41bp 0.452322523587167 0.710673617193466 0.90391743 0.89111185 prediction 0.421347234386933 Functional Gain - ARHGEF5 ENSG00000050327 CDS Human protein_coding chr7:144068340 chr7:144068341 nonsynonymous SNV 0.704 3 22 hm5C_associated_SNPs_124269 0 0 0 0 2 ARHGEF5 chr7:144068254 3'AG 144068254 Downstream 88bp
chr7 144068341 144068341 1 + C T SKCM 144068340 + 144068320 144068360 41 TTCCAACTTTCAACTTCACTCCGGGCCACACTTTCCAACCA TTCCAACTTTCAACTTCACTCTGGGCCACACTTTCCAACCA < 41bp 0.452322523587167 0.710673617193466 0.90391743 0.89111185 prediction 0.421347234386933 Functional Gain - ARHGEF5 ENSG00000050327 CDS Human protein_coding chr7:144068340 chr7:144068341 nonsynonymous SNV 0.704 3 22 hm5C_associated_SNPs_124269 0 0 0 0 2 ARHGEF5 chr7:144068414 5'GT 144068414 Upstream 74bp
chr1 235606224 235606224 1 + C G rs114972093 235606223 + 235606203 235606243 41 AAGTCCTGGAGAAACAACTGCCGGGTAAGAAGAACCAGCCT AAGTCCTGGAGAAACAACTGCGGGGTAAGAAGAACCAGCCT < 41bp 0.395869033147382 0.710671147662847 0.54990447 0.9225373 prediction 0.421342295325694 Functional Gain - TBCE ENSG00000116957 CDS Human protein_coding chr1:235606223 chr1:235606224 nonsynonymous SNV 0.987 3 22 hm5C_associated_SNPs_124270 0 0 1 0 2 TBCE chr1:235606167 3'AG 235606167 Downstream 58bp
chr1 235606224 235606224 1 + C G rs114972093 235606223 + 235606203 235606243 41 AAGTCCTGGAGAAACAACTGCCGGGTAAGAAGAACCAGCCT AAGTCCTGGAGAAACAACTGCGGGGTAAGAAGAACCAGCCT < 41bp 0.395869033147382 0.710671147662847 0.54990447 0.9225373 prediction 0.421342295325694 Functional Gain - TBCE ENSG00000116957 CDS Human protein_coding chr1:235606223 chr1:235606224 nonsynonymous SNV 0.987 3 22 hm5C_associated_SNPs_124270 0 0 1 0 2 TBCE chr1:235606226 5'GT 235606226 Upstream 3bp
chr1 45242407 45242407 1 + C G KIRP 45242406 + 45242386 45242426 41 GGTAACAAGAAATACCGTGCCCTGAGGTTGGACGTGGGGAA GGTAACAAGAAATACCGTGCCGTGAGGTTGGACGTGGGGAA < 41bp 0.67534762939743 0.886011627274822 0.09188056 0.2066482 prediction 0.421327995754786 Functional Gain - RPS8 ENSG00000142937 CDS Human protein_coding chr1:45242406 chr1:45242407 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_124272 0 0 1 0 1 RPS8 chr1:45242347 3'AG 45242347 Downstream 61bp
chr8 126021295 126021295 1 + T C UCEC 126021292 + 126021272 126021312 41 CCTGGTCTCCAATAAAGTTTCTGTATCATCTCATTTTGTTG CCTGGTCTCCAATAAAGTTTCTGCATCATCTCATTTTGTTG < 41bp 0.485528466714285 0.710653797520869 0.0057227015 0.024736613 prediction 0.421307595041737 Functional Gain - SQLE ENSG00000104549 CDS Human protein_coding chr8:126021292 chr8:126021295 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_124276 0 0 1 0 2 SQLE chr8:126021213 3'AG 126021213 Downstream 83bp
chr8 126021295 126021295 1 + T C UCEC 126021292 + 126021272 126021312 41 CCTGGTCTCCAATAAAGTTTCTGTATCATCTCATTTTGTTG CCTGGTCTCCAATAAAGTTTCTGCATCATCTCATTTTGTTG < 41bp 0.485528466714285 0.710653797520869 0.0057227015 0.024736613 prediction 0.421307595041737 Functional Gain - SQLE ENSG00000104549 CDS Human protein_coding chr8:126021292 chr8:126021295 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_124276 0 0 1 0 2 SQLE chr8:126021326 5'GT 126021326 Upstream 32bp
chr2 24387129 24387129 1 + A G rs199663745 24387126 + 24387106 24387146 41 GCTATCAGGAGGGAAATAATCCAAGTGCCAAAGAGGCCATC GCTATCAGGAGGGAAATAATCCAGGTGCCAAAGAGGCCATC < 41bp 0.593910698162678 0.804553617113897 0.9111686 0.93131983 prediction 0.421285837902438 Functional Gain - FAM228B ENSG00000219626;ENSG00000266118 CDS Human other chr2:24387126 chr2:24387129 nonsynonymous SNV 0.204 0 24 hm5C_associated_SNPs_124282 0 0 0 0 2 FAM228B chr2:24387068 3'AG 24387068 Downstream 62bp
chr2 24387129 24387129 1 + A G rs199663745 24387126 + 24387106 24387146 41 GCTATCAGGAGGGAAATAATCCAAGTGCCAAAGAGGCCATC GCTATCAGGAGGGAAATAATCCAGGTGCCAAAGAGGCCATC < 41bp 0.593910698162678 0.804553617113897 0.9111686 0.93131983 prediction 0.421285837902438 Functional Gain - FAM228B ENSG00000219626;ENSG00000266118 CDS Human other chr2:24387126 chr2:24387129 nonsynonymous SNV 0.204 0 24 hm5C_associated_SNPs_124282 0 0 0 0 2 FAM228B chr2:24387204 5'GT 24387204 Upstream 76bp
chr20 43374752 43374752 1 + C A PAAD 43374748 + 43374728 43374768 41 CCGCGAGCTGGAGCGCCTGGCGCTCCAGGCTGAGCCCCACC CCGCGAGCTGGAGCGCCTGGCGCTACAGGCTGAGCCCCACC < 41bp 0.308570697496098 0.710642372992316 0.7403754 0.54408705 prediction 0.421284745984632 Functional Gain - KCNK15 ENSG00000124249 CDS Human protein_coding chr20:43374748 chr20:43374752 synonymous SNV . 0 25 hm5C_associated_SNPs_124283 0 0 0 0 1 KCNK15 chr20:43374834 5'GT 43374834 Upstream 83bp
chr1 101186250 101186250 1 + T C BLCA 101186247 + 101186227 101186267 41 TTGGGAACGAACACTCTTACCTGTGCACAGCAACTTGTGAA TTGGGAACGAACACTCTTACCTGCGCACAGCAACTTGTGAA < 41bp 0.526181912736723 0.736822948520461 0.06188026 0.06422973 prediction 0.421282071567475 Functional Gain - VCAM1 ENSG00000162692 CDS Human protein_coding chr1:101186247 chr1:101186250 nonsynonymous SNV 0.859 4 24 hm5C_associated_SNPs_124285 0 0 0 0 1 VCAM1 chr1:101186307 5'GT 101186307 Upstream 58bp
chr8 25181418 25181418 1 + C G THCA 25181417 + 25181397 25181437 41 CCTTCGTGAAGCTGATGAACCCGGATGGCACCACTCTGCAG CCTTCGTGAAGCTGATGAACCGGGATGGCACCACTCTGCAG < 41bp 0.670139106847717 0.880766537266381 0.7121344 0.8948083 prediction 0.421254860837327 Functional Gain - DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25181417 chr8:25181418 nonsynonymous SNV 0.891 0 22 hm5C_associated_SNPs_124291 0 0 1 0 3 DOCK5 chr8:25181364 3'AG 25181364 Downstream 55bp
chr8 25181418 25181418 1 + C G THCA 25181417 + 25181397 25181437 41 CCTTCGTGAAGCTGATGAACCCGGATGGCACCACTCTGCAG CCTTCGTGAAGCTGATGAACCGGGATGGCACCACTCTGCAG < 41bp 0.670139106847717 0.880766537266381 0.7121344 0.8948083 prediction 0.421254860837327 Functional Gain - DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25181417 chr8:25181418 nonsynonymous SNV 0.891 0 22 hm5C_associated_SNPs_124291 0 0 1 0 3 DOCK5 chr8:25181368 3'AG 25181368 Downstream 51bp
chr8 25181418 25181418 1 + C G THCA 25181417 + 25181397 25181437 41 CCTTCGTGAAGCTGATGAACCCGGATGGCACCACTCTGCAG CCTTCGTGAAGCTGATGAACCGGGATGGCACCACTCTGCAG < 41bp 0.670139106847717 0.880766537266381 0.7121344 0.8948083 prediction 0.421254860837327 Functional Gain - DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25181417 chr8:25181418 nonsynonymous SNV 0.891 0 22 hm5C_associated_SNPs_124291 0 0 1 0 3 DOCK5 chr8:25181467 5'GT 25181467 Upstream 50bp
chr7 157015981 157015981 1 + A G LIHC 157015978 + 157015958 157015998 41 GTCCCCGCCGCTGTCTGTGTCTGAGGAAAGACAGCTTGCTG GTCCCCGCCGCTGTCTGTGTCTGGGGAAAGACAGCTTGCTG < 41bp 0.592806034811014 0.803431641031333 0.27444595 0.8921808 prediction 0.421251212440639 Functional Gain - UBE3C ENSG00000009335 CDS Human protein_coding chr7:157015978 chr7:157015981 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_124293 0 0 1 0 2 UBE3C chr7:157015948 3'AG 157015948 Downstream 34bp
chr7 157015981 157015981 1 + A G LIHC 157015978 + 157015958 157015998 41 GTCCCCGCCGCTGTCTGTGTCTGAGGAAAGACAGCTTGCTG GTCCCCGCCGCTGTCTGTGTCTGGGGAAAGACAGCTTGCTG < 41bp 0.592806034811014 0.803431641031333 0.27444595 0.8921808 prediction 0.421251212440639 Functional Gain - UBE3C ENSG00000009335 CDS Human protein_coding chr7:157015978 chr7:157015981 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_124293 0 0 1 0 2 UBE3C chr7:157016045 5'GT 157016045 Upstream 65bp
chr3 130992326 130992326 1 + A G rs566314355 130992323 + 130992303 130992343 41 GCTGTGCATTGATTTTCAGACACAAAGACCATCACCACCAT GCTGTGCATTGATTTTCAGACACGAAGACCATCACCACCAT < 41bp 0.491047957974607 0.710620574472759 0.032295614 0.048967093 prediction 0.421241148945519 Functional Gain - NEK11 ENSG00000114670 CDS Human protein_coding chr3:130992323 chr3:130992326 synonymous SNV . 0 24 hm5C_associated_SNPs_124297 0 0 0 1 2 NEK11 chr3:130992322 3'AG 130992322 Downstream 5bp
chr3 130992326 130992326 1 + A G rs566314355 130992323 + 130992303 130992343 41 GCTGTGCATTGATTTTCAGACACAAAGACCATCACCACCAT GCTGTGCATTGATTTTCAGACACGAAGACCATCACCACCAT < 41bp 0.491047957974607 0.710620574472759 0.032295614 0.048967093 prediction 0.421241148945519 Functional Gain - NEK11 ENSG00000114670 CDS Human protein_coding chr3:130992323 chr3:130992326 synonymous SNV . 0 24 hm5C_associated_SNPs_124297 0 0 0 1 2 NEK11 chr3:130992418 5'GT 130992418 Upstream 93bp
chr2 25038412 25038412 1 + T C UCEC 25038409 + 25038389 25038429 41 CGAGGAGTTTGTGTCTGCATCAGTACTGCTTTTGAGGGGAA CGAGGAGTTTGTGTCTGCATCAGCACTGCTTTTGAGGGGAA < 41bp 0.55414173433783 0.764757849000616 0.2588828 0.30087754 prediction 0.421232229325572 Functional Gain - CENPO ENSG00000138092 CDS Human protein_coding chr2:25038409 chr2:25038412 synonymous SNV . 0 24 hm5C_associated_SNPs_124299 0 0 1 0 1 CENPO chr2:25038366 3'AG 25038366 Downstream 47bp
chr21 44182289 44182289 1 + C T rs115523880 44182288 + 44182268 44182308 41 CGTGGCCTTCCAGATCCTCGCCGAGCCTGAGTGCAACATCT CGTGGCCTTCCAGATCCTCGCTGAGCCTGAGTGCAACATCT < 41bp 0.491293123368353 0.710612454997086 0.1494236 0.07488841 prediction 0.421224909994171 Functional Gain - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44182288 chr21:44182289 synonymous SNV . 0 22 hm5C_associated_SNPs_124303 0 0 0 0 2 PDE9A chr21:44182193 3'AG 44182193 Downstream 97bp
chr21 44182289 44182289 1 + C T rs115523880 44182288 + 44182268 44182308 41 CGTGGCCTTCCAGATCCTCGCCGAGCCTGAGTGCAACATCT CGTGGCCTTCCAGATCCTCGCTGAGCCTGAGTGCAACATCT < 41bp 0.491293123368353 0.710612454997086 0.1494236 0.07488841 prediction 0.421224909994171 Functional Gain - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44182288 chr21:44182289 synonymous SNV . 0 22 hm5C_associated_SNPs_124303 0 0 0 0 2 PDE9A chr21:44182349 5'GT 44182349 Upstream 61bp
chr11 64128706 64128706 1 + C A SKCM 64128702 + 64128682 64128722 41 TCGGGCTGAGCAAGGAGTTCCTGACGGAGGAGGTGAGTGGA TCGGGCTGAGCAAGGAGTTCCTGAAGGAGGAGGTGAGTGGA < 41bp 0.287386986598558 0.710611301671882 0.24616784 0.44752797 prediction 0.421222603343764 Functional Gain - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64128702 chr11:64128706 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_124305 0 0 1 0 1 RPS6KA4 chr11:64128713 5'GT 64128713 Upstream 8bp
chr3 19295192 19295192 1 + C A BLCA 19295191 + 19295171 19295211 41 CCAGGTGGCTAAGGGTTTCCCCATAGTCTACTGTTCCGATG CCAGGTGGCTAAGGGTTTCCCAATAGTCTACTGTTCCGATG < 41bp 0.467167575508748 0.710609002393677 0.3072856 0.3977398 prediction 0.421218004787353 Functional Gain - KCNH8 ENSG00000183960 CDS Human protein_coding chr3:19295191 chr3:19295192 synonymous SNV . 0 22 hm5C_associated_SNPs_124306 0 0 0 0 1 KCNH8 chr3:19295146 3'AG 19295146 Downstream 47bp
chrX 101826351 101826351 1 + C T UCEC 101826350 + 101826330 101826370 41 TTTTCTTTACTTCCTCTAGACCGAAGGCAAGATCTCAGTGG TTTTCTTTACTTCCTCTAGACTGAAGGCAAGATCTCAGTGG < 41bp 0.543481321739285 0.754086904361306 0.20063245 0.06682247 prediction 0.421211165244041 Functional Gain - NXF4 ENSG00000196970 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:101826350 chrX:101826351 . . 0 22 hm5C_associated_SNPs_124308 0 0 0 0 1 NXF4 chrX:101826349 3'AG 101826349 Downstream 3bp
chr11 71507205 71507205 1 + C T rs57679800 71507204 + 71507184 71507224 41 GATGTGCCAGCTGTTCACCACCGAGCTATGTGAGCCCCCAC GATGTGCCAGCTGTTCACCACTGAGCTATGTGAGCCCCCAC < 41bp 0.47430286320625 0.710600970169794 0.13469169 0.07137796 prediction 0.421201940339588 Functional Gain - FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71507204 chr11:71507205 nonsynonymous SNV 0.016 0 22 hm5C_associated_SNPs_124311 0 0 0 1 1 FAM86C1 chr11:71507212 5'GT 71507212 Upstream 8bp
chr1 25628156 25628156 1 + C A COAD 25628152 + 25628132 25628172 41 CATCTCAGGGTCATCCTTGGCTCACCCCCAAGGGAAGATCA CATCTCAGGGTCATCCTTGGCTCAACCCCAAGGGAAGATCA < 41bp 0.281109583194071 0.710597424660576 0.10162678 0.20426744 prediction 0.421194849321152 Functional Gain - RHD ENSG00000187010 CDS Human protein_coding chr1:25628152 chr1:25628156 nonsynonymous SNV 0.680 2 25 hm5C_associated_SNPs_124313 0 0 1 0 1 RHD chr1:25628177 5'GT 25628177 Upstream 22bp
chr7 114655819 114655819 1 + T C UCEC 114655817 + 114655797 114655837 41 CAACATTGTCCTGGGACAAGCGTCATGTGGCATCTGCACCT CAACATTGTCCTGGGACAAGCGCCATGTGGCATCTGCACCT < 41bp 0.658059179298392 0.868654392147142 0.23514241 0.29629436 prediction 0.421190425697499 Functional Gain - MDFIC ENSG00000135272 CDS Human protein_coding chr7:114655817 chr7:114655819 nonsynonymous SNV 0.465 4 23 hm5C_associated_SNPs_124314 0 0 1 0 1 MDFIC chr7:114655742 3'AG 114655742 Downstream 78bp
chr1 66713169 66713169 1 + C T SKCM 66713168 + 66713148 66713188 41 ATGTGGAAAATGGCCCTTCCCCAGGTCGGAGTCCACTGGAT ATGTGGAAAATGGCCCTTCCCTAGGTCGGAGTCCACTGGAT < 41bp 0.542671514220331 0.753266177670208 0.8725285 0.53022933 prediction 0.421189326899755 Functional Gain - PDE4B ENSG00000184588 CDS Human protein_coding chr1:66713168 chr1:66713169 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_124316 0 0 0 0 1 PDE4B chr1:66713143 3'AG 66713143 Downstream 27bp
chr17 43246448 43246448 1 + C A UCEC 43246447 + 43246427 43246467 41 GACTCTGGTGGTTCCCTGCCCCTGACACCGCGGATGGAGAG GACTCTGGTGGTTCCCTGCCCATGACACCGCGGATGGAGAG < 41bp 0.453269270537297 0.710590698773443 0.018049806 0.032773525 prediction 0.421181397546886 Functional Gain - HEXIM2 ENSG00000168517 CDS Human protein_coding chr17:43246447 chr17:43246448 nonsynonymous SNV 0.130 0 22 hm5C_associated_SNPs_124319 0 0 0 0 1 HEXIM2 chr17:43246382 3'AG 43246382 Downstream 67bp
chr1 16095093 16095093 1 + C A THCA 16095089 + 16095069 16095109 41 TGGAGGAAGAGCTGCCACCTCCCCCGGCAGAACCTGTTGAG TGGAGGAAGAGCTGCCACCTCCCCAGGCAGAACCTGTTGAG < 41bp 0.276930052215918 0.710590355137928 0.08808792 0.22991729 prediction 0.421180710275856 Functional Gain - FBLIM1 ENSG00000162458 CDS Human protein_coding chr1:16095089 chr1:16095093 nonsynonymous SNV 0.026 2 25 hm5C_associated_SNPs_124320 0 0 1 0 2 FBLIM1 chr1:16095023 3'AG 16095023 Downstream 71bp
chr1 16095093 16095093 1 + C A THCA 16095089 + 16095069 16095109 41 TGGAGGAAGAGCTGCCACCTCCCCCGGCAGAACCTGTTGAG TGGAGGAAGAGCTGCCACCTCCCCAGGCAGAACCTGTTGAG < 41bp 0.276930052215918 0.710590355137928 0.08808792 0.22991729 prediction 0.421180710275856 Functional Gain - FBLIM1 ENSG00000162458 CDS Human protein_coding chr1:16095089 chr1:16095093 nonsynonymous SNV 0.026 2 25 hm5C_associated_SNPs_124320 0 0 1 0 2 FBLIM1 chr1:16095125 5'GT 16095125 Upstream 33bp
chr19 42407537 42407537 1 + C A CESC 42407533 + 42407513 42407553 41 CTACACCACGTCAACCAAGCCGTGCGTGACATGGAGGACCT CTACACCACGTCAACCAAGCCGTGAGTGACATGGAGGACCT < 41bp 0.295946840625859 0.710585716800169 0.3106172 0.34037736 prediction 0.421171433600338 Functional Gain - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42407533 chr19:42407537 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_124324 0 0 1 0 2 ARHGEF1 chr19:42407457 3'AG 42407457 Downstream 81bp
chr19 42407537 42407537 1 + C A CESC 42407533 + 42407513 42407553 41 CTACACCACGTCAACCAAGCCGTGCGTGACATGGAGGACCT CTACACCACGTCAACCAAGCCGTGAGTGACATGGAGGACCT < 41bp 0.295946840625859 0.710585716800169 0.3106172 0.34037736 prediction 0.421171433600338 Functional Gain - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42407533 chr19:42407537 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_124324 0 0 1 0 2 ARHGEF1 chr19:42407557 5'GT 42407557 Upstream 21bp
chr16 336368 336368 1 + C A ESCA 336367 + 336347 336387 41 CCCCAGCCCTATCTCCTGAGCCAGGAGATACCCCCTGATTG CCCCAGCCCTATCTCCTGAGCAAGGAGATACCCCCTGATTG < 41bp 0.442218570291868 0.71058537975952 0.86200917 0.80098915 prediction 0.421170759519039 Functional Gain - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:336367 chr16:336368 nonsynonymous SNV 0.921 2 22 hm5C_associated_SNPs_124325 0 0 0 0 1 PDIA2 chr16:336353 3'AG 336353 Downstream 16bp
chr17 26817606 26817606 1 + C T rs372789191 26817605 + 26817585 26817625 41 CATCGTTGGGGTGCGGCCTGCCCCGTGAGTTCCTCCTGCAA CATCGTTGGGGTGCGGCCTGCTCCGTGAGTTCCTCCTGCAA < 41bp 0.442215041796574 0.710584548044229 0.09855443 0.24604312 prediction 0.421169096088459 Functional Gain - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26817605 chr17:26817606 synonymous SNV . 0 22 hm5C_associated_SNPs_124326 0 0 0 0 1 SLC13A2 chr17:26817608 5'GT 26817608 Upstream 3bp
chr8 37611044 37611044 1 + T C rs142722211 37611041 + 37611021 37611061 41 GCTATGAAAATAGCCGAAGCCAATAAGGTAAAGACCCCGCA GCTATGAAAATAGCCGAAGCCAACAAGGTAAAGACCCCGCA < 41bp 0.528672409155136 0.73924994298788 0.14065915 0.16671681 prediction 0.421155067665488 Functional Gain - ERLIN2 ENSG00000147475 CDS Human protein_coding chr8:37611041 chr8:37611044 synonymous SNV . 0 24 hm5C_associated_SNPs_124328 0 0 1 0 2 ERLIN2 chr8:37610968 3'AG 37610968 Downstream 77bp
chr8 37611044 37611044 1 + T C rs142722211 37611041 + 37611021 37611061 41 GCTATGAAAATAGCCGAAGCCAATAAGGTAAAGACCCCGCA GCTATGAAAATAGCCGAAGCCAACAAGGTAAAGACCCCGCA < 41bp 0.528672409155136 0.73924994298788 0.14065915 0.16671681 prediction 0.421155067665488 Functional Gain - ERLIN2 ENSG00000147475 CDS Human protein_coding chr8:37611041 chr8:37611044 synonymous SNV . 0 24 hm5C_associated_SNPs_124328 0 0 1 0 2 ERLIN2 chr8:37611047 5'GT 37611047 Upstream 4bp
chr21 43833327 43833327 1 + A G COAD 43833324 + 43833304 43833344 41 TTCGCCACGGAAGCATCTCTCTTAGCAGGTGGGCAGCCCTG TTCGCCACGGAAGCATCTCTCTTGGCAGGTGGGCAGCCCTG < 41bp 0.457836667879623 0.71057130323627 0.24087843 0.39314795 prediction 0.421142606472539 Functional Gain - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43833324 chr21:43833327 synonymous SNV . 0 24 hm5C_associated_SNPs_124331 0 0 0 0 1 UBASH3A chr21:43833331 5'GT 43833331 Upstream 5bp
chr11 212613 212613 1 + A G STAD 212610 + 212590 212630 41 AGCTTAGGGATGGCCACCTCCCCAGGTGCTGCCCCCTCTGC AGCTTAGGGATGGCCACCTCCCCGGGTGCTGCCCCCTCTGC < 41bp 0.612886111088974 0.823451395347725 0.53424186 0.8574088 prediction 0.421130568517502 Functional Gain - RIC8A;RIC8A ENSG00000177963;ENSG00000177963 exonic;splicing Human protein_coding chr11:212610 chr11:212613 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_124332 0 0 1 0 1 RIC8A chr11:212597 3'AG 212597 Downstream 17bp
chr22 37329973 37329973 1 + C A UCEC 37329972 + 37329952 37329992 41 AGGGTGAGGGTCAGGACCTCCCGCACCGGCTACAACGGGAT AGGGTGAGGGTCAGGACCTCCAGCACCGGCTACAACGGGAT < 41bp 0.622213325210778 0.832774609261328 0.16931662 0.3874765 prediction 0.4211225681011 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37329972 chr22:37329973 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_124333 0 0 0 0 2 CSF2RB chr22:37329874 3'AG 37329874 Downstream 100bp
chr22 37329973 37329973 1 + C A UCEC 37329972 + 37329952 37329992 41 AGGGTGAGGGTCAGGACCTCCCGCACCGGCTACAACGGGAT AGGGTGAGGGTCAGGACCTCCAGCACCGGCTACAACGGGAT < 41bp 0.622213325210778 0.832774609261328 0.16931662 0.3874765 prediction 0.4211225681011 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37329972 chr22:37329973 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_124333 0 0 0 0 2 CSF2RB chr22:37330036 5'GT 37330036 Upstream 64bp
chr22 50319194 50319194 1 + C T rs535022209 50319193 + 50319173 50319213 41 CGGAAGATGCCTGTGTGCCGCCGGCAGAGGCTGGTGAGTGG CGGAAGATGCCTGTGTGCCGCTGGCAGAGGCTGGTGAGTGG < 41bp 0.557412638444917 0.767969823584086 0.20437664 0.18158197 prediction 0.421114370278339 Functional Gain - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50319193 chr22:50319194 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_124338 0 0 1 0 1 CRELD2 chr22:50319205 5'GT 50319205 Upstream 12bp
chr5 148586680 148586680 1 + C T UCEC 148586679 + 148586659 148586699 41 GACCTGCAGCGTCATCCTCACCGGGGAGTATATCAGCAAGT GACCTGCAGCGTCATCCTCACTGGGGAGTATATCAGCAAGT < 41bp 0.60394880464572 0.814501644227862 0.8692602 0.72185904 prediction 0.421105679164284 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148586679 chr5:148586680 synonymous SNV . 0 22 hm5C_associated_SNPs_124339 0 0 1 0 1 ABLIM3 chr5:148586697 5'GT 148586697 Upstream 18bp
chr4 38910256 38910256 1 + T C STAD 38910254 + 38910234 38910274 41 GGCCTTGATGCGTTGGAATTCATCGGCAAGAAAACCATGAA GGCCTTGATGCGTTGGAATTCACCGGCAAGAAAACCATGAA < 41bp 0.420547053571551 0.710550823755451 0.19581336 0.23991886 prediction 0.421101647510902 Functional Gain - FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38910254 chr4:38910256 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_124340 0 0 1 0 1 FAM114A1 chr4:38910347 5'GT 38910347 Upstream 92bp
chr11 123489864 123489864 1 + A G ESCA 123489861 + 123489841 123489881 41 CCCAGCTCTTAGAGTCCCAACAAAAGTACCACGATACTGAG CCCAGCTCTTAGAGTCCCAACAAGAGTACCACGATACTGAG < 41bp 0.468812910612938 0.710541162759373 0.16670531 0.18778047 prediction 0.421082325518746 Functional Gain - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123489861 chr11:123489864 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_124341 0 0 0 0 2 GRAMD1B chr11:123489815 3'AG 123489815 Downstream 50bp
chr11 123489864 123489864 1 + A G ESCA 123489861 + 123489841 123489881 41 CCCAGCTCTTAGAGTCCCAACAAAAGTACCACGATACTGAG CCCAGCTCTTAGAGTCCCAACAAGAGTACCACGATACTGAG < 41bp 0.468812910612938 0.710541162759373 0.16670531 0.18778047 prediction 0.421082325518746 Functional Gain - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123489861 chr11:123489864 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_124341 0 0 0 0 2 GRAMD1B chr11:123489932 5'GT 123489932 Upstream 69bp
chr9 90345956 90345956 1 + A G rs142361476 90345953 + 90345933 90345973 41 GAATGGGGCATGGGTGGCTACGTAAAGATGGCCAAAGACCG GAATGGGGCATGGGTGGCTACGTGAAGATGGCCAAAGACCG < 41bp 0.564206116160861 0.774730731615135 0.1682947 0.3217734 prediction 0.421049230908547 Functional Gain - CTSL ENSG00000135047 CDS Human protein_coding chr9:90345953 chr9:90345956 synonymous SNV . 0 24 hm5C_associated_SNPs_124346 0 0 1 0 1 CTSL chr9:90345923 3'AG 90345923 Downstream 34bp
chr9 894113 894113 1 + C T SARC 894112 + 894092 894132 41 CTTCTGGGGAGGTGGGAAATCCCCTCGGGGGATCCCCTGTG CTTCTGGGGAGGTGGGAAATCTCCTCGGGGGATCCCCTGTG < 41bp 0.620042014615512 0.830563204260361 0.36648944 0.5752924 prediction 0.421042379289697 Functional Gain - DMRT1 ENSG00000137090 CDS Human protein_coding chr9:894112 chr9:894113 nonsynonymous SNV 0.876 1 22 hm5C_associated_SNPs_124347 0 0 0 0 1 DMRT1 chr9:894195 5'GT 894195 Upstream 83bp
chr10 93740313 93740313 1 + A G UCEC 93740310 + 93740290 93740330 41 AGGAAATTCTGGACCTTATTCACAAGGTACACAGCAAATGT AGGAAATTCTGGACCTTATTCACGAGGTACACAGCAAATGT < 41bp 0.481200266202576 0.710515766226198 0.06051165 0.09880084 prediction 0.421031532452395 Functional Gain - BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93740310 chr10:93740313 nonsynonymous SNV 0.979 2 24 hm5C_associated_SNPs_124349 0 0 1 0 1 BTAF1 chr10:93740315 5'GT 93740315 Upstream 3bp
chr1 26897990 26897990 1 + C T rs11546000 26897989 + 26897969 26898009 41 CATCCTGTATGTGGACGAGTCCGGGAATCCCGAGTGCCTGC CATCCTGTATGTGGACGAGTCTGGGAATCCCGAGTGCCTGC < 41bp 0.6095284310211 0.820041399922527 0.5239767 0.38347995 prediction 0.421025937802854 Functional Gain - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26897989 chr1:26897990 synonymous SNV . 0 22 hm5C_associated_SNPs_124350 0 0 1 0 1 RPS6KA1 chr1:26897940 3'AG 26897940 Downstream 51bp
chr8 121463476 121463476 1 + T G UCEC 121463474 + 121463454 121463494 41 AAGATAAAATTGAAGATGTTCTTCAAACGAATATCGAAGAA AAGATAAAATTGAAGATGTTCTGCAAACGAATATCGAAGAA < 41bp 0.397533066806678 0.710511300234549 0.8328476 0.8426371 prediction 0.421022600469098 Functional Gain - MTBP ENSG00000172167 CDS Human protein_coding chr8:121463474 chr8:121463476 synonymous SNV . 0 23 hm5C_associated_SNPs_124352 0 0 0 0 2 MTBP chr8:121463411 3'AG 121463411 Downstream 66bp
chr8 121463476 121463476 1 + T G UCEC 121463474 + 121463454 121463494 41 AAGATAAAATTGAAGATGTTCTTCAAACGAATATCGAAGAA AAGATAAAATTGAAGATGTTCTGCAAACGAATATCGAAGAA < 41bp 0.397533066806678 0.710511300234549 0.8328476 0.8426371 prediction 0.421022600469098 Functional Gain - MTBP ENSG00000172167 CDS Human protein_coding chr8:121463474 chr8:121463476 synonymous SNV . 0 23 hm5C_associated_SNPs_124352 0 0 0 0 2 MTBP chr8:121463562 5'GT 121463562 Upstream 87bp
chr4 187201273 187201273 1 + C A SKCM 187201272 + 187201252 187201292 41 AAAGCTGCAGGCACAGCATCCCAGGTAAACTGAGAGTTCTG AAAGCTGCAGGCACAGCATCCAAGGTAAACTGAGAGTTCTG < 41bp 0.433644768539337 0.710511111386384 0.5341115 0.3613029 prediction 0.421022222772767 Functional Gain - F11 ENSG00000088926 CDS Human protein_coding chr4:187201272 chr4:187201273 nonsynonymous SNV 0.859 5 22 hm5C_associated_SNPs_124353 0 0 0 0 1 F11 chr4:187201275 5'GT 187201275 Upstream 3bp
chr6 26505348 26505348 1 + T C SARC 26505346 + 26505326 26505366 41 ACTGTGGCTGCTTCAGTGATCATCAGAGACACTTCTGCGAA ACTGTGGCTGCTTCAGTGATCACCAGAGACACTTCTGCGAA < 41bp 0.638862374507838 0.849370395341088 0.20889705 0.28189653 prediction 0.421016041666499 Functional Gain - BTN1A1 ENSG00000124557 CDS Human protein_coding chr6:26505346 chr6:26505348 nonsynonymous SNV 0.110 1 23 hm5C_associated_SNPs_124356 0 0 0 0 1 BTN1A1 chr6:26505434 5'GT 26505434 Upstream 87bp
chr16 15609245 15609245 1 + C T COAD 15609244 + 15609224 15609264 41 ATGGCAAAAATTCAGCGTCTCCGGGAAGTCTTGGTCCGCCG ATGGCAAAAATTCAGCGTCTCTGGGAAGTCTTGGTCCGCCG < 41bp 0.599157591314914 0.809665256188449 0.15248153 0.24872103 prediction 0.42101532974707 Functional Gain - C16orf45 ENSG00000166780 CDS Human other chr16:15609244 chr16:15609245 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_124357 0 0 0 0 2 C16orf45 chr16:15609162 3'AG 15609162 Downstream 84bp
chr16 15609245 15609245 1 + C T COAD 15609244 + 15609224 15609264 41 ATGGCAAAAATTCAGCGTCTCCGGGAAGTCTTGGTCCGCCG ATGGCAAAAATTCAGCGTCTCTGGGAAGTCTTGGTCCGCCG < 41bp 0.599157591314914 0.809665256188449 0.15248153 0.24872103 prediction 0.42101532974707 Functional Gain - C16orf45 ENSG00000166780 CDS Human protein_coding chr16:15609244 chr16:15609245 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_124357 0 0 0 0 2 C16orf45 chr16:15609285 5'GT 15609285 Upstream 41bp
chr6 117861933 117861933 1 + A G SKCM 117861930 + 117861910 117861950 41 TTGTCCCCCAGACATGGCACCAGAGGATAGCCTTGAAGGTG TTGTCCCCCAGACATGGCACCAGGGGATAGCCTTGAAGGTG < 41bp 0.459478034322919 0.710506070941901 0.72952545 0.915768 prediction 0.421012141883801 Functional Gain - DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117861930 chr6:117861933 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_124358 0 0 1 0 1 DCBLD1 chr6:117861978 5'GT 117861978 Upstream 46bp
chr11 118502878 118502878 1 + C T COAD 118502877 + 118502857 118502897 41 CCCTGGTGTCTGCCCCCAGGCCGAAATGGAGCGGGCACTGC CCCTGGTGTCTGCCCCCAGGCTGAAATGGAGCGGGCACTGC < 41bp 0.468614428160861 0.710504205575917 0.09254575 0.17818964 prediction 0.421008411151835 Functional Gain - PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118502877 chr11:118502878 synonymous SNV . 0 22 hm5C_associated_SNPs_124359 0 0 0 0 1 PHLDB1 chr11:118502876 3'AG 118502876 Downstream 3bp
chr2 86359497 86359497 1 + C T UCEC 86359496 + 86359476 86359516 41 AGTACATGGCCTTTTAAAAACCGGAGACAACTGGAAATTCA AGTACATGGCCTTTTAAAAACTGGAGACAACTGGAAATTCA < 41bp 0.615046409569724 0.825547644854853 0.29301152 0.1647391 prediction 0.421002470570258 Functional Gain - PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86359496 chr2:86359497 synonymous SNV . 0 22 hm5C_associated_SNPs_124361 0 0 1 0 2 PTCD3 chr2:86359441 3'AG 86359441 Downstream 57bp
chr2 86359497 86359497 1 + C T UCEC 86359496 + 86359476 86359516 41 AGTACATGGCCTTTTAAAAACCGGAGACAACTGGAAATTCA AGTACATGGCCTTTTAAAAACTGGAGACAACTGGAAATTCA < 41bp 0.615046409569724 0.825547644854853 0.29301152 0.1647391 prediction 0.421002470570258 Functional Gain - PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86359496 chr2:86359497 synonymous SNV . 0 22 hm5C_associated_SNPs_124361 0 0 1 0 2 PTCD3 chr2:86359547 5'GT 86359547 Upstream 51bp
chr22 23438557 23438557 1 + T C HNSC 23438554 + 23438534 23438574 41 GGCGTCACAGCCATCATCTTCTGTGTGGAGCTCAGCGGCTA GGCGTCACAGCCATCATCTTCTGCGTGGAGCTCAGCGGCTA < 41bp 0.524666257782998 0.735163774917328 0.2540918 0.261119 prediction 0.42099503426866 Functional Gain - GNAZ ENSG00000128266 CDS Human protein_coding chr22:23438554 chr22:23438557 synonymous SNV . 0 24 hm5C_associated_SNPs_124363 0 0 0 0 1 GNAZ chr22:23438605 5'GT 23438605 Upstream 49bp
chr16 1825855 1825855 1 + C G rs200300991 1825851 + 1825831 1825871 41 CACAGCAGGGCGCTGGGCAGCCGGCGAGCCAGTGGCAAGAG CACAGCAGGGCGCTGGGCAGCCGGGGAGCCAGTGGCAAGAG < 41bp 0.653638555487768 0.864134371989273 0.26022953 0.8680947 prediction 0.42099163300301 Functional Gain - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825851 chr16:1825855 synonymous SNV . 0 25 hm5C_associated_SNPs_124366 0 0 1 0 1 EME2 chr16:1825798 3'AG 1825798 Downstream 58bp
chr14 75475786 75475786 1 + C T HNSC 75475785 + 75475765 75475805 41 CCCTGTGTTTGACTACGTTCCCCCAGAGCTCATTACCCTCT CCCTGTGTTTGACTACGTTCCTCCAGAGCTCATTACCCTCT < 41bp 0.636150747651021 0.846644791717657 0.14447793 0.95208156 prediction 0.420988088133273 Functional Gain - EIF2B2 ENSG00000119718 CDS Human protein_coding chr14:75475785 chr14:75475786 synonymous SNV . 0 22 hm5C_associated_SNPs_124367 0 0 1 0 1 EIF2B2 chr14:75475734 3'AG 75475734 Downstream 53bp
chr3 133485235 133485235 1 + C T SKCM 133485234 + 133485214 133485254 41 AGAACCGCTGGCTGGAACATCCCCATGGGCCTGCTCTACAA AGAACCGCTGGCTGGAACATCTCCATGGGCCTGCTCTACAA < 41bp 0.659989119701657 0.870482915823439 0.061850756 0.9785669 prediction 0.420987592243564 Functional Gain - TF ENSG00000091513 CDS Human protein_coding chr3:133485234 chr3:133485235 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_124368 0 0 1 0 1 TF chr3:133485277 5'GT 133485277 Upstream 43bp
chr1 156552138 156552138 1 + A G UCEC 156552135 + 156552115 156552155 41 TGGGTGCCAGGAGAGCAGGCCACAGTGCTAAGAAACCTCGG TGGGTGCCAGGAGAGCAGGCCACGGTGCTAAGAAACCTCGG < 41bp 0.455850114933719 0.710491982435948 0.34213418 0.37735215 prediction 0.420983964871895 Functional Gain - TTC24 ENSG00000187862 CDS Human protein_coding chr1:156552135 chr1:156552138 synonymous SNV . 0 24 hm5C_associated_SNPs_124369 0 0 0 0 1 TTC24 chr1:156552226 5'GT 156552226 Upstream 89bp
chr16 1774612 1774612 1 + C G BLCA 1774611 + 1774591 1774631 41 GAGAAGAAAGAGCTGCAAATCCAGGTGGAGCACTACGAGTT GAGAAGAAAGAGCTGCAAATCGAGGTGGAGCACTACGAGTT < 41bp 0.389793308385773 0.710490026979633 0.91120297 0.9390285 prediction 0.420980053959266 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1774611 chr16:1774612 nonsynonymous SNV 0.267 1 22 hm5C_associated_SNPs_124370 0 0 1 0 1 MAPK8IP3 chr16:1774558 3'AG 1774558 Downstream 55bp
chr2 219616465 219616465 1 + C T COAD 219616464 + 219616444 219616484 41 GGGACAAATGTCGAATGGCTCCAGAGCATGTCACTGCACAG GGGACAAATGTCGAATGGCTCTAGAGCATGTCACTGCACAG < 41bp 0.619292490012515 0.829781212271709 0.6898838 0.52145725 prediction 0.420977444518387 Functional Gain - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219616464 chr2:219616465 nonsynonymous SNV 0.999 0 22 hm5C_associated_SNPs_124371 0 0 1 0 2 TTLL4 chr2:219616427 3'AG 219616427 Downstream 39bp
chr2 219616465 219616465 1 + C T COAD 219616464 + 219616444 219616484 41 GGGACAAATGTCGAATGGCTCCAGAGCATGTCACTGCACAG GGGACAAATGTCGAATGGCTCTAGAGCATGTCACTGCACAG < 41bp 0.619292490012515 0.829781212271709 0.6898838 0.52145725 prediction 0.420977444518387 Functional Gain - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219616464 chr2:219616465 nonsynonymous SNV 0.999 0 22 hm5C_associated_SNPs_124371 0 0 1 0 2 TTLL4 chr2:219616529 5'GT 219616529 Upstream 65bp
chr1 158912098 158912098 1 + T G LUAD 158912096 + 158912076 158912116 41 ACGTTTGAGGTTCCAAAGGACATCATCAGAAGAGCAAAGAA ACGTTTGAGGTTCCAAAGGACAGCATCAGAAGAGCAAAGAA < 41bp 0.381354276052745 0.710485851435248 0.072190136 0.06407648 prediction 0.420971702870496 Functional Gain - PYHIN1 ENSG00000163564 CDS Human protein_coding chr1:158912096 chr1:158912098 nonsynonymous SNV 0.002 3 23 hm5C_associated_SNPs_124374 0 0 0 0 1 PYHIN1 chr1:158912189 5'GT 158912189 Upstream 92bp
chr19 17836641 17836641 1 + C T UCEC 17836640 + 17836620 17836660 41 CACTCCTCCTCCATACAGATCCGGGACATCCTGGCCACCAC CACTCCTCCTCCATACAGATCTGGGACATCCTGGCCACCAC < 41bp 0.561184419948558 0.771669611344865 0.87495005 0.45074266 prediction 0.420970382792613 Functional Gain - MAP1S ENSG00000130479 CDS Human protein_coding chr19:17836640 chr19:17836641 nonsynonymous SNV 0.041 1 22 hm5C_associated_SNPs_124375 0 0 1 0 1 MAP1S chr19:17836638 3'AG 17836638 Downstream 4bp
chr20 1115859 1115859 1 + C T CESC 1115858 + 1115838 1115878 41 AAAAGGCTAATGTAAGCAGTCCCCACCGGGAGTTCCCCCCT AAAAGGCTAATGTAAGCAGTCTCCACCGGGAGTTCCCCCCT < 41bp 0.647435648015506 0.857914197217001 0.00932315 0.91330945 prediction 0.42095709840299 Functional Gain - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1115858 chr20:1115859 nonsynonymous SNV 0.022 0 22 hm5C_associated_SNPs_124379 0 0 1 0 2 PSMF1 chr20:1115764 3'AG 1115764 Downstream 96bp
chr20 1115859 1115859 1 + C T CESC 1115858 + 1115838 1115878 41 AAAAGGCTAATGTAAGCAGTCCCCACCGGGAGTTCCCCCCT AAAAGGCTAATGTAAGCAGTCTCCACCGGGAGTTCCCCCCT < 41bp 0.647435648015506 0.857914197217001 0.00932315 0.91330945 prediction 0.42095709840299 Functional Gain - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1115858 chr20:1115859 nonsynonymous SNV 0.022 0 22 hm5C_associated_SNPs_124379 0 0 1 0 2 PSMF1 chr20:1115949 5'GT 1115949 Upstream 91bp
chr5 156675970 156675970 1 + C A BRCA 156675966 + 156675946 156675986 41 GGATTTCGGTTGTACAAGCCCCGGCTGGCCTCCACACACGT GGATTTCGGTTGTACAAGCCCCGGATGGCCTCCACACACGT < 41bp 0.298326536782503 0.71047685379667 0.28872162 0.4949194 prediction 0.42095370759334 Functional Gain - ITK ENSG00000113263 CDS Human protein_coding chr5:156675966 chr5:156675970 nonsynonymous SNV 0.943 2 25 hm5C_associated_SNPs_124380 0 0 0 0 1 ITK chr5:156676017 5'GT 156676017 Upstream 48bp
chr2 233271807 233271807 1 + C T UCEC 233271806 + 233271786 233271826 41 CTTCTGGAACCGCCAGGCAGCCGAGGCCCTGGGTGCCGCCA CTTCTGGAACCGCCAGGCAGCTGAGGCCCTGGGTGCCGCCA < 41bp 0.547211139453174 0.757672952263406 0.84044725 0.47663492 prediction 0.420923625620464 Functional Gain - ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233271806 chr2:233271807 synonymous SNV . 0 22 hm5C_associated_SNPs_124385 0 0 0 0 2 ALPPL2 chr2:233271767 3'AG 233271767 Downstream 41bp
chr2 233271807 233271807 1 + C T UCEC 233271806 + 233271786 233271826 41 CTTCTGGAACCGCCAGGCAGCCGAGGCCCTGGGTGCCGCCA CTTCTGGAACCGCCAGGCAGCTGAGGCCCTGGGTGCCGCCA < 41bp 0.547211139453174 0.757672952263406 0.84044725 0.47663492 prediction 0.420923625620464 Functional Gain - ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233271806 chr2:233271807 synonymous SNV . 0 22 hm5C_associated_SNPs_124385 0 0 0 0 2 ALPPL2 chr2:233271883 5'GT 233271883 Upstream 77bp
chr6 126277965 126277965 1 + A G rs561897941 126277962 + 126277942 126277982 41 GGCCTCCGGCTTTGAAGTTCCTCACCGCGTCTCCTTCCCTC GGCCTCCGGCTTTGAAGTTCCTCGCCGCGTCTCCTTCCCTC < 41bp 0.481596838231124 0.710458683342845 0.29746455 0.3686505 prediction 0.42091736668569 Functional Gain - HINT3 ENSG00000111911 UTR5 Human protein_coding chr6:126277962 chr6:126277965 . . 0 24 hm5C_associated_SNPs_124388 0 0 1 0 1 HINT3 chr6:126278034 5'GT 126278034 Upstream 70bp
chr20 58519515 58519515 1 + C T UCEC 58519514 + 58519494 58519534 41 AACAAAACGGAAGCCGTGCCCCGAGTGGGAGGACTTCTTGG AACAAAACGGAAGCCGTGCCCTGAGTGGGAGGACTTCTTGG < 41bp 0.569079795201462 0.779536379165186 0.38457766 0.20276374 prediction 0.420913167927449 Functional Gain - FAM217B ENSG00000196227 CDS Human protein_coding chr20:58519514 chr20:58519515 stopgain 0.000 0 22 hm5C_associated_SNPs_124389 0 0 1 0 1 FAM217B chr20:58519451 3'AG 58519451 Downstream 65bp
chr19 44764064 44764064 1 + A G rs1233444 44764061 + 44764041 44764081 41 GTACTTCCGCTGCAGGAGGGCGAAGCAGCCGTCATCTATCC GTACTTCCGCTGCAGGAGGGCGAGGCAGCCGTCATCTATCC < 41bp 0.483123313956178 0.710455205421803 0.70397884 0.87384784 prediction 0.420910410843606 Functional Gain - ZNF233 ENSG00000159915 CDS Human protein_coding chr19:44764061 chr19:44764064 synonymous SNV . 0 24 hm5C_associated_SNPs_124390 0 0 0 0 2 ZNF233 chr19:44764091 5'GT 44764091 Upstream 28bp
chr19 44764064 44764064 1 + A G rs1233444 44764061 + 44764041 44764081 41 GTACTTCCGCTGCAGGAGGGCGAAGCAGCCGTCATCTATCC GTACTTCCGCTGCAGGAGGGCGAGGCAGCCGTCATCTATCC < 41bp 0.483123313956178 0.710455205421803 0.70397884 0.87384784 prediction 0.420910410843606 Functional Gain - ZNF233 ENSG00000159915 CDS Human protein_coding chr19:44764061 chr19:44764064 synonymous SNV . 0 24 hm5C_associated_SNPs_124390 0 0 0 0 2 ZNF233 chr19:44764155 5'GT 44764155 Upstream 92bp
chr15 76352331 76352331 1 + C A rs141247407 76352330 + 76352310 76352350 41 CGGCCGGCGCCGCTGCAGAGCCGAGCGAATCCCGAGCCCGG CGGCCGGCGCCGCTGCAGAGCAGAGCGAATCCCGAGCCCGG < 41bp 0.580207018696052 0.790661206249477 0.8905298 0.88881433 prediction 0.42090837510685 Functional Gain - TMEM266 ENSG00000169758 UTR5 Human protein_coding chr15:76352330 chr15:76352331 . . 0 22 hm5C_associated_SNPs_124391 0 0 0 0 1 TMEM266 chr15:76352357 5'GT 76352357 Upstream 27bp
chr12 113446913 113446913 1 + C T STAD 113446912 + 113446892 113446932 41 GCCTGTGATCTTGGACCCAGCCGAACCCACAGGTGACGTGG GCCTGTGATCTTGGACCCAGCTGAACCCACAGGTGACGTGG < 41bp 0.46449482867685 0.710451315993576 0.28756997 0.27842158 prediction 0.420902631987152 Functional Gain - OAS2 ENSG00000111335 CDS Human protein_coding chr12:113446912 chr12:113446913 synonymous SNV . 0 22 hm5C_associated_SNPs_124392 0 0 0 0 1 OAS2 chr12:113446892 3'AG 113446892 Downstream 22bp
chr7 114619811 114619811 1 + C T SKCM 114619810 + 114619790 114619830 41 CAAAGTAAATGCTGTCTTTTCCCAAAAGACAGGCTCTTCAC CAAAGTAAATGCTGTCTTTTCTCAAAAGACAGGCTCTTCAC < 41bp 0.638524553359806 0.848970252884001 0.028237581 0.33229017 prediction 0.42089139904839 Functional Gain - MDFIC ENSG00000135272 CDS Human protein_coding chr7:114619810 chr7:114619811 synonymous SNV . 0 22 hm5C_associated_SNPs_124394 0 0 0 0 1 MDFIC chr7:114619836 5'GT 114619836 Upstream 26bp
chr17 56326478 56326478 1 + C T SKCM 56326477 + 56326457 56326497 41 TGGGCTGTGGTGCTCCTGCTCCCGTGGTGAGATGCGACCCG TGGGCTGTGGTGCTCCTGCTCTCGTGGTGAGATGCGACCCG < 41bp 0.602765999212029 0.813205242652934 0.46865046 0.16634947 prediction 0.420878486881809 Functional Gain - LPO ENSG00000167419 CDS Human protein_coding chr17:56326477 chr17:56326478 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_124396 0 0 0 0 1 LPO chr17:56326538 5'GT 56326538 Upstream 61bp
chr12 111884608 111884608 1 + T A rs3184504 111884604 + 111884584 111884624 41 TGCTCCAGCATCCAGGAGGTCCGGTGGTGCACACGGCTTGA TGCTCCAGCATCCAGGAGGTCCGGAGGTGCACACGGCTTGA < 41bp 0.372753480965026 0.710439122555631 0.67311686 0.8554968 prediction 0.420878245111263 Functional Gain - SH2B3 ENSG00000111252 CDS Human protein_coding chr12:111884604 chr12:111884608 nonsynonymous SNV 0.074 0 25 hm5C_associated_SNPs_124397 0 1 1 0 1 SH2B3 chr12:111884658 5'GT 111884658 Upstream 51bp
chr11 67352159 67352159 1 + T C LIHC 67352156 + 67352136 67352176 41 AGCCATGCCTCCCCCAACAGCTATACGGGCAGCTCCCCAAG AGCCATGCCTCCCCCAACAGCTACACGGGCAGCTCCCCAAG < 41bp 0.508623800258977 0.719055366851106 0.90380704 0.9142817 prediction 0.420863133184258 Functional Gain - GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67352156 chr11:67352159 nonsynonymous SNV 0.584 3 24 hm5C_associated_SNPs_124399 0 0 1 0 2 GSTP1 chr11:67352156 3'AG 67352156 Downstream 4bp
chr11 67352159 67352159 1 + T C LIHC 67352156 + 67352136 67352176 41 AGCCATGCCTCCCCCAACAGCTATACGGGCAGCTCCCCAAG AGCCATGCCTCCCCCAACAGCTACACGGGCAGCTCCCCAAG < 41bp 0.508623800258977 0.719055366851106 0.90380704 0.9142817 prediction 0.420863133184258 Functional Gain - GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67352156 chr11:67352159 nonsynonymous SNV 0.584 3 24 hm5C_associated_SNPs_124399 0 0 1 0 2 GSTP1 chr11:67352243 5'GT 67352243 Upstream 85bp
chrX 48458940 48458940 1 + C T CESC 48458939 + 48458919 48458959 41 TCTGAGGATGGTCGCTGCATCCGAGAGATCCCTGACCCCGA TCTGAGGATGGTCGCTGCATCTGAGAGATCCCTGACCCCGA < 41bp 0.594314456632666 0.804743140759663 0.4352796 0.34728858 prediction 0.420857368253994 Functional Gain - WDR13 ENSG00000101940 CDS Human protein_coding chrX:48458939 chrX:48458940 stopgain 1.000 1 22 hm5C_associated_SNPs_124401 0 0 1 0 1 WDR13 chrX:48459014 5'GT 48459014 Upstream 75bp
chr7 79082436 79082436 1 + C A KIRC 79082435 + 79082415 79082455 41 CACGGGGGTCTCGTTCACCTCCAGCAGCAGCTCCTCCGACA CACGGGGGTCTCGTTCACCTCAAGCAGCAGCTCCTCCGACA < 41bp 0.475298783454826 0.710424044976454 0.19443819 0.35239977 prediction 0.420848089952909 Functional Gain - MAGI2 ENSG00000187391 CDS Human protein_coding chr7:79082435 chr7:79082436 synonymous SNV . 0 22 hm5C_associated_SNPs_124402 0 0 1 0 1 MAGI2 chr7:79082507 5'GT 79082507 Upstream 72bp
chr9 120466768 120466768 1 + C G GBM 120466764 + 120466744 120466784 41 TGCCAGGATGATGTCTGCCTCGCGCCTGGCTGGGACTCTGA TGCCAGGATGATGTCTGCCTCGCGGCTGGCTGGGACTCTGA < 41bp 0.627246405312336 0.837668718860881 0.2602863 0.63183546 prediction 0.420844627097089 Functional Gain - TLR4 ENSG00000136869 CDS Human protein_coding chr9:120466764 chr9:120466768 synonymous SNV . 0 25 hm5C_associated_SNPs_124403 0 0 0 0 1 TLR4 chr9:120466843 5'GT 120466843 Upstream 76bp
chr1 1222332 1222332 1 + C G rs139397015 1222328 + 1222308 1222348 41 CAGAGGCTGAGCCACTCGGGCAGCCGGGTCAGAGTGGGGTT CAGAGGCTGAGCCACTCGGGCAGCGGGGTCAGAGTGGGGTT < 41bp 0.405195889346721 0.710416358375137 0.3036855 0.7979914 prediction 0.420832716750273 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1222328 chr1:1222332 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_124405 0 0 0 0 1 SCNN1D chr1:1222355 5'GT 1222355 Upstream 24bp
chr3 8609174 8609174 1 + C A THCA 8609173 + 8609153 8609193 41 GTGGAAGATCTGGCCTGGCACCGAAAGCACTTTGTCTGTGA GTGGAAGATCTGGCCTGGCACAGAAAGCACTTTGTCTGTGA < 41bp 0.609236964929942 0.819650388544167 0.054720193 0.36978802 prediction 0.420826847228452 Functional Gain - LMCD1 ENSG00000071282 CDS Human protein_coding chr3:8609173 chr3:8609174 synonymous SNV . 0 22 hm5C_associated_SNPs_124406 0 0 0 0 1 LMCD1 chr3:8609126 3'AG 8609126 Downstream 49bp
chr5 110730432 110730432 1 + T C STAD 110730429 + 110730409 110730449 41 ATTGTGGAAAAGGGATATTACAGTGAGCGAGATGCTGCAGA ATTGTGGAAAAGGGATATTACAGCGAGCGAGATGCTGCAGA < 41bp 0.489339254198157 0.710396426427358 0.7854011 0.8897784 prediction 0.420792852854717 Functional Gain - CAMK4 ENSG00000152495 CDS Human protein_coding chr5:110730429 chr5:110730432 stoploss . 0 24 hm5C_associated_SNPs_124414 0 0 0 0 2 CAMK4 chr5:110730408 3'AG 110730408 Downstream 25bp
chr5 110730432 110730432 1 + T C STAD 110730429 + 110730409 110730449 41 ATTGTGGAAAAGGGATATTACAGTGAGCGAGATGCTGCAGA ATTGTGGAAAAGGGATATTACAGCGAGCGAGATGCTGCAGA < 41bp 0.489339254198157 0.710396426427358 0.7854011 0.8897784 prediction 0.420792852854717 Functional Gain - CAMK4 ENSG00000152495 CDS Human protein_coding chr5:110730429 chr5:110730432 stoploss . 0 24 hm5C_associated_SNPs_124414 0 0 0 0 2 CAMK4 chr5:110730480 5'GT 110730480 Upstream 49bp
chr20 2376022 2376022 1 + C T UCEC 2376021 + 2376001 2376041 41 AGCATCAGGCTTTCCTCTCACCGCAAACACAGCAACCGGAG AGCATCAGGCTTTCCTCTCACTGCAAACACAGCAACCGGAG < 41bp 0.62283524042494 0.833228948728682 0.2596758 0.33426607 prediction 0.420787416607485 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2376021 chr20:2376022 nonsynonymous SNV 0.086 2 22 hm5C_associated_SNPs_124416 0 0 0 0 1 TGM6 chr20:2376082 5'GT 2376082 Upstream 61bp
chr19 39759369 39759369 1 + C T STAD 39759368 + 39759348 39759388 41 GCTGATGGCCGCAGTGCTGACCGTGACTGGAGCAGTTCCTG GCTGATGGCCGCAGTGCTGACTGTGACTGGAGCAGTTCCTG < 41bp 0.533859391847239 0.744251574044582 0.38515574 0.25924203 prediction 0.420784364394685 Functional Gain - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39759368 chr19:39759369 synonymous SNV . 0 22 hm5C_associated_SNPs_124418 0 0 0 0 1 IFNL2 chr19:39759317 3'AG 39759317 Downstream 53bp
chr12 48360477 48360477 1 + C T GBM 48360476 + 48360456 48360496 41 TTATTTTCAGGTGAATTTTACCGGGAAGGCCGAGATGGGAG TTATTTTCAGGTGAATTTTACTGGGAAGGCCGAGATGGGAG < 41bp 0.594928220344964 0.805314293138097 0.81075954 0.5857915 prediction 0.420772145586265 Functional Gain - TMEM106C ENSG00000134291 CDS Human protein_coding chr12:48360476 chr12:48360477 synonymous SNV . 0 22 hm5C_associated_SNPs_124420 0 0 1 0 2 TMEM106C chr12:48360466 3'AG 48360466 Downstream 12bp
chr12 48360477 48360477 1 + C T GBM 48360476 + 48360456 48360496 41 TTATTTTCAGGTGAATTTTACCGGGAAGGCCGAGATGGGAG TTATTTTCAGGTGAATTTTACTGGGAAGGCCGAGATGGGAG < 41bp 0.594928220344964 0.805314293138097 0.81075954 0.5857915 prediction 0.420772145586265 Functional Gain - TMEM106C ENSG00000134291 CDS Human protein_coding chr12:48360476 chr12:48360477 synonymous SNV . 0 22 hm5C_associated_SNPs_124420 0 0 1 0 2 TMEM106C chr12:48360515 5'GT 48360515 Upstream 39bp
chr3 129009603 129009603 1 + A G STAD 129009600 + 129009580 129009620 41 AGCGATGTCAGGGAACAAACCAGAGGCAGCCATACTTCATC AGCGATGTCAGGGAACAAACCAGGGGCAGCCATACTTCATC < 41bp 0.599398272241935 0.809783070896121 0.44948637 0.9045742 prediction 0.420769597308372 Functional Gain - HMCES ENSG00000183624 CDS Human protein_coding chr3:129009600 chr3:129009603 nonsynonymous SNV 0.591 1 24 hm5C_associated_SNPs_124422 0 0 1 0 2 HMCES chr3:129009522 3'AG 129009522 Downstream 82bp
chr3 129009603 129009603 1 + A G STAD 129009600 + 129009580 129009620 41 AGCGATGTCAGGGAACAAACCAGAGGCAGCCATACTTCATC AGCGATGTCAGGGAACAAACCAGGGGCAGCCATACTTCATC < 41bp 0.599398272241935 0.809783070896121 0.44948637 0.9045742 prediction 0.420769597308372 Functional Gain - HMCES ENSG00000183624 CDS Human protein_coding chr3:129009600 chr3:129009603 nonsynonymous SNV 0.591 1 24 hm5C_associated_SNPs_124422 0 0 1 0 2 HMCES chr3:129009647 5'GT 129009647 Upstream 45bp
chr3 57543397 57543397 1 + A G COAD 57543394 + 57543374 57543414 41 CAGCGCAGGAGAAGGTGCTCCAGAGATCTTCTGTTCTTCAG CAGCGCAGGAGAAGGTGCTCCAGGGATCTTCTGTTCTTCAG < 41bp 0.580190055299636 0.790571396222011 0.809385 0.8892443 prediction 0.420762681844749 Functional Gain - PDE12 ENSG00000174840 CDS Human protein_coding chr3:57543394 chr3:57543397 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_124423 0 0 1 0 1 PDE12 chr3:57543414 5'GT 57543414 Upstream 18bp
chr2 204281674 204281674 1 + C A UCEC 204281670 + 204281650 204281690 41 ACCGCCACCTGTGGAAGAACCAGTCTTTGATGAGTCTCCCC ACCGCCACCTGTGGAAGAACCAGTATTTGATGAGTCTCCCC < 41bp 0.306658229009979 0.71037988628714 0.21698251 0.118406296 prediction 0.420759772574281 Functional Gain - ABI2 ENSG00000138443 CDS Human protein_coding chr2:204281670 chr2:204281674 synonymous SNV . 0 25 hm5C_associated_SNPs_124424 0 0 1 0 2 ABI2 chr2:204281631 3'AG 204281631 Downstream 44bp
chr2 204281674 204281674 1 + C A UCEC 204281670 + 204281650 204281690 41 ACCGCCACCTGTGGAAGAACCAGTCTTTGATGAGTCTCCCC ACCGCCACCTGTGGAAGAACCAGTATTTGATGAGTCTCCCC < 41bp 0.306658229009979 0.71037988628714 0.21698251 0.118406296 prediction 0.420759772574281 Functional Gain - ABI2 ENSG00000138443 CDS Human protein_coding chr2:204281670 chr2:204281674 synonymous SNV . 0 25 hm5C_associated_SNPs_124424 0 0 1 0 2 ABI2 chr2:204281637 3'AG 204281637 Downstream 38bp
chr19 6937642 6937642 1 + C A rs146614136 6937638 + 6937618 6937658 41 TCAAGGATCTTGCTGTCCTCCATGCCATCCGCTTCCAAGAC TCAAGGATCTTGCTGTCCTCCATGACATCCGCTTCCAAGAC < 41bp 0.29859394264909 0.710374854881424 0.055438995 0.024024636 prediction 0.420749709762847 Functional Gain - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6937638 chr19:6937642 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_124427 0 0 0 0 2 ADGRE1 chr19:6937555 3'AG 6937555 Downstream 88bp
chr19 6937642 6937642 1 + C A rs146614136 6937638 + 6937618 6937658 41 TCAAGGATCTTGCTGTCCTCCATGCCATCCGCTTCCAAGAC TCAAGGATCTTGCTGTCCTCCATGACATCCGCTTCCAAGAC < 41bp 0.29859394264909 0.710374854881424 0.055438995 0.024024636 prediction 0.420749709762847 Functional Gain - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6937638 chr19:6937642 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_124427 0 0 0 0 2 ADGRE1 chr19:6937659 5'GT 6937659 Upstream 18bp
chr10 70863699 70863699 1 + C G rs4892 70863698 + 70863678 70863718 41 CTCTGGATCAGGCTTCGGCTCCGGCTCCGGCTCTGGATCAG CTCTGGATCAGGCTTCGGCTCGGGCTCCGGCTCTGGATCAG < 41bp 0.679984681147956 0.890359206843912 0.25593227 0.8403413 prediction 0.420749051391913 Functional Gain - SRGN ENSG00000122862 CDS Human protein_coding chr10:70863698 chr10:70863699 synonymous SNV . 0 22 hm5C_associated_SNPs_124429 0 0 1 0 1 SRGN chr10:70863627 3'AG 70863627 Downstream 73bp
chr11 120984337 120984337 1 + C T SKCM 120984336 + 120984316 120984356 41 ACCCCCGAGATCGTGAATATCCAGGAGACCACAAACGTCAA ACCCCCGAGATCGTGAATATCTAGGAGACCACAAACGTCAA < 41bp 0.449470609087917 0.710372761875781 0.6074258 0.35587734 prediction 0.420745523751562 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:120984336 chr11:120984337 stopgain 0.999 1 22 hm5C_associated_SNPs_124431 0 0 0 0 2 TECTA chr11:120984262 3'AG 120984262 Downstream 76bp
chr11 120984337 120984337 1 + C T SKCM 120984336 + 120984316 120984356 41 ACCCCCGAGATCGTGAATATCCAGGAGACCACAAACGTCAA ACCCCCGAGATCGTGAATATCTAGGAGACCACAAACGTCAA < 41bp 0.449470609087917 0.710372761875781 0.6074258 0.35587734 prediction 0.420745523751562 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:120984336 chr11:120984337 stopgain 0.999 1 22 hm5C_associated_SNPs_124431 0 0 0 0 2 TECTA chr11:120984427 5'GT 120984427 Upstream 91bp
chrX 37641386 37641386 1 + C T HNSC 37641385 + 37641365 37641405 41 TTCCTCTTTGTCTGGTATTACCGGGTTTATGATATTCCACC TTCCTCTTTGTCTGGTATTACTGGGTTTATGATATTCCACC < 41bp 0.476459261096102 0.710366228441598 0.9042816 0.7893231 prediction 0.420732456883195 Functional Gain - CYBB ENSG00000165168 CDS Human protein_coding chrX:37641385 chrX:37641386 nonsynonymous SNV 0.043 1 22 hm5C_associated_SNPs_124433 0 0 0 1 2 CYBB chrX:37641341 3'AG 37641341 Downstream 46bp
chrX 37641386 37641386 1 + C T HNSC 37641385 + 37641365 37641405 41 TTCCTCTTTGTCTGGTATTACCGGGTTTATGATATTCCACC TTCCTCTTTGTCTGGTATTACTGGGTTTATGATATTCCACC < 41bp 0.476459261096102 0.710366228441598 0.9042816 0.7893231 prediction 0.420732456883195 Functional Gain - CYBB ENSG00000165168 CDS Human protein_coding chrX:37641385 chrX:37641386 nonsynonymous SNV 0.043 1 22 hm5C_associated_SNPs_124433 0 0 0 1 2 CYBB chrX:37641436 5'GT 37641436 Upstream 51bp
chr17 15638682 15638682 1 + C T rs73978520 15638681 + 15638661 15638701 41 GGATGGAGATGGATGGGGACCCGTATAACCTGCCTGCCCAG GGATGGAGATGGATGGGGACCTGTATAACCTGCCTGCCCAG < 41bp 0.586860742753454 0.797224497638771 0.36564493 0.345627 prediction 0.420727509770635 Functional Gain - TBC1D26 ENSG00000214946 CDS Human antisense chr17:15638681 chr17:15638682 nonsynonymous SNV 0.012 0 22 hm5C_associated_SNPs_124434 0 0 0 0 2 TBC1D26 chr17:15638662 3'AG 15638662 Downstream 21bp
chr17 15638682 15638682 1 + C T rs73978520 15638681 + 15638661 15638701 41 GGATGGAGATGGATGGGGACCCGTATAACCTGCCTGCCCAG GGATGGAGATGGATGGGGACCTGTATAACCTGCCTGCCCAG < 41bp 0.586860742753454 0.797224497638771 0.36564493 0.345627 prediction 0.420727509770635 Functional Gain - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15638681 chr17:15638682 nonsynonymous SNV 0.012 0 22 hm5C_associated_SNPs_124434 0 0 0 0 2 TBC1D26 chr17:15638737 5'GT 15638737 Upstream 56bp
chr12 48359741 48359741 1 + A G UCEC 48359738 + 48359718 48359758 41 GGCATCAAAGTGGTGAAAGTCACATTTAATAAGCAAGACTC GGCATCAAAGTGGTGAAAGTCACGTTTAATAAGCAAGACTC < 41bp 0.581096127925418 0.791456427531992 0.137896 0.1866988 prediction 0.420720599213147 Functional Gain - TMEM106C ENSG00000134291 CDS Human protein_coding chr12:48359738 chr12:48359741 synonymous SNV . 0 24 hm5C_associated_SNPs_124436 0 0 1 0 1 TMEM106C chr12:48359780 5'GT 48359780 Upstream 40bp
chr5 1246040 1246040 1 + C T COAD 1246039 + 1246019 1246059 41 TGTGCTGCTGTCCTTGCTGCCCGTGCTGTGGGTCCCGGTGG TGTGCTGCTGTCCTTGCTGCCTGTGCTGTGGGTCCCGGTGG < 41bp 0.544435466815531 0.75478540733439 0.05147022 0.03386718 prediction 0.420699881037717 Functional Gain - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1246039 chr5:1246040 synonymous SNV . 0 22 hm5C_associated_SNPs_124442 0 0 0 0 1 SLC6A18 chr5:1245963 3'AG 1245963 Downstream 78bp
chr1 1417974 1417974 1 + C T HNSC 1417973 + 1417953 1417993 41 TTCCGTGCCTTTGTGACAGACCGGGACAAAGTGACAGCCAC TTCCGTGCCTTTGTGACAGACTGGGACAAAGTGACAGCCAC < 41bp 0.454354504967883 0.710348734721791 0.47315136 0.2774626 prediction 0.420697469443583 Functional Gain - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1417973 chr1:1417974 nonsynonymous SNV 0.980 1 22 hm5C_associated_SNPs_124445 0 0 1 0 2 ATAD3B chr1:1417925 3'AG 1417925 Downstream 50bp
chr1 1417974 1417974 1 + C T HNSC 1417973 + 1417953 1417993 41 TTCCGTGCCTTTGTGACAGACCGGGACAAAGTGACAGCCAC TTCCGTGCCTTTGTGACAGACTGGGACAAAGTGACAGCCAC < 41bp 0.454354504967883 0.710348734721791 0.47315136 0.2774626 prediction 0.420697469443583 Functional Gain - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1417973 chr1:1417974 nonsynonymous SNV 0.980 1 22 hm5C_associated_SNPs_124445 0 0 1 0 2 ATAD3B chr1:1417994 5'GT 1417994 Upstream 21bp
chr19 8436324 8436324 1 + C G BLCA 8436323 + 8436303 8436343 41 GGGCGCCACCACCGTCCCACCCAGCGGCCTCTCCGTACCCT GGGCGCCACCACCGTCCCACCGAGCGGCCTCTCCGTACCCT < 41bp 0.385517437170539 0.710334886626074 0.23133194 0.7128589 prediction 0.420669773252147 Functional Gain - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8436323 chr19:8436324 synonymous SNV . 0 22 hm5C_associated_SNPs_124451 0 0 1 0 1 ANGPTL4 chr19:8436406 5'GT 8436406 Upstream 83bp
chr4 37455641 37455641 1 + C G rs182678062 37455640 + 37455620 37455660 41 CCGGGACCCCGCCGCCGCCGCCGCCGCCGCCGTCTGGCCCC CCGGGACCCCGCCGCCGCCGCGGCCGCCGCCGTCTGGCCCC < 41bp 0.631469808314423 0.841803385302251 0.41998976 0.69553804 prediction 0.420667153975655 Functional Gain - C4orf19 ENSG00000154274 UTR5 Human protein_coding chr4:37455640 chr4:37455641 . . 0 22 hm5C_associated_SNPs_124452 0 0 0 0 1 C4orf19 chr4:37455662 5'GT 37455662 Upstream 22bp
chr11 20483679 20483679 1 + C T SKCM 20483678 + 20483658 20483698 41 CTGTTGTGGAAGTTTTAGATCCGAAGACTCTTATTTCAGAA CTGTTGTGGAAGTTTTAGATCTGAAGACTCTTATTTCAGAA < 41bp 0.45780018707069 0.710333370817893 0.386949 0.14461353 prediction 0.420666741635787 Functional Gain - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20483678 chr11:20483679 nonsynonymous SNV 0.696 1 22 hm5C_associated_SNPs_124453 0 0 0 0 1 PRMT3 chr11:20483713 5'GT 20483713 Upstream 35bp
chr22 31522377 31522377 1 + A G rs201915385 31522374 + 31522354 31522394 41 GCCCTCAGGATCACTGTGGTCACATGGAACGTGGGCACTGC GCCCTCAGGATCACTGTGGTCACGTGGAACGTGGGCACTGC < 41bp 0.47282366764976 0.71033131759042 0.89022267 0.88017803 prediction 0.420662635180839 Functional Gain - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31522374 chr22:31522377 synonymous SNV . 0 24 hm5C_associated_SNPs_124454 0 0 0 0 2 INPP5J chr22:31522280 3'AG 31522280 Downstream 98bp
chr22 31522377 31522377 1 + A G rs201915385 31522374 + 31522354 31522394 41 GCCCTCAGGATCACTGTGGTCACATGGAACGTGGGCACTGC GCCCTCAGGATCACTGTGGTCACGTGGAACGTGGGCACTGC < 41bp 0.47282366764976 0.71033131759042 0.89022267 0.88017803 prediction 0.420662635180839 Functional Gain - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31522374 chr22:31522377 synonymous SNV . 0 24 hm5C_associated_SNPs_124454 0 0 0 0 2 INPP5J chr22:31522362 3'AG 31522362 Downstream 16bp
chrX 119048781 119048781 1 + C T OV 119048780 + 119048760 119048800 41 TATCTCAACTGCTGACCTACCCGTAGCACGAATCTCTGCTG TATCTCAACTGCTGACCTACCTGTAGCACGAATCTCTGCTG < 41bp 0.613100954505606 0.823416859846051 0.04195249 0.03997144 prediction 0.420631810680889 Functional Gain - AKAP14 ENSG00000186471 CDS Human protein_coding chrX:119048780 chrX:119048781 synonymous SNV . 0 22 hm5C_associated_SNPs_124459 0 0 0 0 1 AKAP14 chrX:119048841 5'GT 119048841 Upstream 61bp
chr17 43861906 43861906 1 + C G rs371192812 43861905 + 43861885 43861925 41 AGGACGGTAGCCGAGCGAGCCCGAGGATGGGAGGGCACCCG AGGACGGTAGCCGAGCGAGCCGGAGGATGGGAGGGCACCCG < 41bp 0.448818129918243 0.710314350303082 0.8348394 0.9006717 prediction 0.420628700606164 Functional Gain - CRHR1 ENSG00000263715 ncRNA_intronic Human protein_coding chr17:43861905 chr17:43861906 . . 0 22 hm5C_associated_SNPs_124460 0 0 0 0 1 CRHR1 chr17:43861943 5'GT 43861943 Upstream 38bp
chr11 58714634 58714634 1 + T C ESCA 58714632 + 58714612 58714652 41 GCCAGGAGCATCCCTGAGTCCCTGAAGGTCAGGGAACAGTG GCCAGGAGCATCCCTGAGTCCCCGAAGGTCAGGGAACAGTG < 41bp 0.458193536685408 0.710313743285502 0.06851846 0.085906714 prediction 0.420627486571004 Functional Gain - GLYATL1 ENSG00000166840 CDS Human protein_coding chr11:58714632 chr11:58714634 nonsynonymous SNV 0.033 1 23 hm5C_associated_SNPs_124461 0 0 0 0 1 GLYATL1 chr11:58714638 5'GT 58714638 Upstream 5bp
chr1 44437948 44437948 1 + T C LUSC 44437946 + 44437926 44437966 41 CCTGGAAGTCATCAAATGATCATGGAAGCTTGGCTCTGACC CCTGGAAGTCATCAAATGATCACGGAAGCTTGGCTCTGACC < 41bp 0.614835626017285 0.825141348544756 0.8638663 0.902557 prediction 0.420611445054941 Functional Gain - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44437946 chr1:44437948 synonymous SNV . 0 23 hm5C_associated_SNPs_124464 0 0 1 0 1 DPH2 chr1:44438006 5'GT 44438006 Upstream 59bp
chr17 48618324 48618324 1 + C T SARC 48618323 + 48618303 48618343 41 CCAGTGCTGCCTGCTGGGCCCCCCACCACAGACCCCTGGGC CCAGTGCTGCCTGCTGGGCCCTCCACCACAGACCCCTGGGC < 41bp 0.438131983235901 0.710305328105557 0.066663444 0.92301583 prediction 0.420610656211113 Functional Gain - EPN3 ENSG00000049283 CDS Human protein_coding chr17:48618323 chr17:48618324 nonsynonymous SNV 0.032 2 22 hm5C_associated_SNPs_124465 0 0 0 0 1 EPN3 chr17:48618423 5'GT 48618423 Upstream 100bp
chr8 62289226 62289226 1 + C A LUSC 62289225 + 62289205 62289245 41 TGGAAGTCCTAATCGAAGATCCGGAGCTTCAGATAAATGGC TGGAAGTCCTAATCGAAGATCAGGAGCTTCAGATAAATGGC < 41bp 0.449408627737101 0.710295118021729 0.08921775 0.6369587 prediction 0.420590236043459 Functional Gain - CLVS1 ENSG00000177182 CDS Human protein_coding chr8:62289225 chr8:62289226 nonsynonymous SNV 0.993 1 22 hm5C_associated_SNPs_124467 0 0 0 1 1 CLVS1 chr8:62289164 3'AG 62289164 Downstream 63bp
chr1 32635621 32635621 1 + A G UCEC 32635618 + 32635598 32635638 41 CAAGAGGGCAAGCGCAGTGGCTCAGGGGTCAATCCTTATTG CAAGAGGGCAAGCGCAGTGGCTCGGGGGTCAATCCTTATTG < 41bp 0.592079566571857 0.802368255252675 0.08981025 0.2465525 prediction 0.420577377361638 Functional Gain - KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32635618 chr1:32635621 synonymous SNV . 0 24 hm5C_associated_SNPs_124469 0 0 1 0 1 KPNA6 chr1:32635661 5'GT 32635661 Upstream 41bp
chr6 80744831 80744831 1 + A G READ 80744828 + 80744808 80744848 41 ATTTGAATAAACTACAACAACACAGTGATAAGATCATCCGA ATTTGAATAAACTACAACAACACGGTGATAAGATCATCCGA < 41bp 0.516709423377873 0.726997764366801 0.17919698 0.30886775 prediction 0.420576681977855 Functional Gain - TTK ENSG00000112742 CDS Human protein_coding chr6:80744828 chr6:80744831 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_124470 0 0 1 0 1 TTK chr6:80744859 5'GT 80744859 Upstream 29bp
chr3 151598350 151598350 1 + T C UCEC 151598348 + 151598328 151598368 41 TTTTCTCTCTCTTCTTTAGGCATGGAATGCAACTTGCAAAA TTTTCTCTCTCTTCTTTAGGCACGGAATGCAACTTGCAAAA < 41bp 0.596025234253989 0.806302504315493 0.34282768 0.40961125 prediction 0.420554540123008 Functional Gain - SUCNR1 ENSG00000198829 CDS Human protein_coding chr3:151598348 chr3:151598350 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_124475 0 0 0 0 1 SUCNR1 chr3:151598347 3'AG 151598347 Downstream 4bp
chr20 58330282 58330282 1 + T C STAD 58330279 + 58330259 58330299 41 CCCCGATGGAGGACCCCGATCTGTACAGAGTGAACCACCCA CCCCGATGGAGGACCCCGATCTGCACAGAGTGAACCACCCA < 41bp 0.562388992429198 0.772642863408647 0.1096268 0.12573853 prediction 0.420507741958899 Functional Gain - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58330279 chr20:58330282 nonsynonymous SNV 0.041 0 24 hm5C_associated_SNPs_124484 0 0 0 0 1 PHACTR3 chr20:58330237 3'AG 58330237 Downstream 46bp
chr5 154254888 154254888 1 + T C UCEC 154254885 + 154254865 154254905 41 AGCATTGATGATGCCAAGTACTGTGGGCGGCTCTATGGCTT AGCATTGATGATGCCAAGTACTGCGGGCGGCTCTATGGCTT < 41bp 0.546089102353172 0.756340757060922 0.31299263 0.3970526 prediction 0.420503309415499 Functional Gain - CNOT8 ENSG00000155508 CDS Human protein_coding chr5:154254885 chr5:154254888 synonymous SNV . 0 24 hm5C_associated_SNPs_124485 0 0 1 0 1 CNOT8 chr5:154254850 3'AG 154254850 Downstream 39bp
chr2 27887996 27887996 1 + C T COAD 27887995 + 27887975 27888015 41 GGAAGACCGAGAGGCAGAATCCGAGTTAACAGTAACACAGT GGAAGACCGAGAGGCAGAATCTGAGTTAACAGTAACACAGT < 41bp 0.460695771317105 0.710246571796392 0.87141585 0.69866353 prediction 0.420493143592784 Functional Gain - SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27887995 chr2:27887996 synonymous SNV . 0 22 hm5C_associated_SNPs_124487 0 0 1 0 1 SLC4A1AP chr2:27887967 3'AG 27887967 Downstream 30bp
chr10 134595394 134595394 1 + C T UCEC 134595393 + 134595373 134595413 41 CCTGGCCTTCCGAATCATGCCCGGGGCAGGTAAACCTCATG CCTGGCCTTCCGAATCATGCCTGGGGCAGGTAAACCTCATG < 41bp 0.595922981603591 0.806169183322488 0.26756525 0.29930618 prediction 0.420492403437795 Functional Gain - INPP5A ENSG00000068383 CDS Human protein_coding chr10:134595393 chr10:134595394 synonymous SNV . 0 22 hm5C_associated_SNPs_124488 0 0 0 0 2 INPP5A chr10:134595365 3'AG 134595365 Downstream 30bp
chr10 134595394 134595394 1 + C T UCEC 134595393 + 134595373 134595413 41 CCTGGCCTTCCGAATCATGCCCGGGGCAGGTAAACCTCATG CCTGGCCTTCCGAATCATGCCTGGGGCAGGTAAACCTCATG < 41bp 0.595922981603591 0.806169183322488 0.26756525 0.29930618 prediction 0.420492403437795 Functional Gain - INPP5A ENSG00000068383 CDS Human protein_coding chr10:134595393 chr10:134595394 synonymous SNV . 0 22 hm5C_associated_SNPs_124488 0 0 0 0 2 INPP5A chr10:134595452 5'GT 134595452 Upstream 59bp
chr12 53670886 53670886 1 + C T STAD 53670885 + 53670865 53670905 41 AGCTCTGCTCTGGATGCTATCCGGGAAGCCCTGCAGCTTCT AGCTCTGCTCTGGATGCTATCTGGGAAGCCCTGCAGCTTCT < 41bp 0.59639655041357 0.80663799852861 0.92546 0.91080946 prediction 0.42048289623008 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53670885 chr12:53670886 nonsynonymous SNV 0.987 2 22 hm5C_associated_SNPs_124492 0 0 1 0 1 ESPL1 chr12:53670867 3'AG 53670867 Downstream 20bp
chr8 86386602 86386602 1 + T C UCEC 86386599 + 86386579 86386619 41 ATATGGGGATTTTGGGAAAGCTGTGCAGCAACCTGATGGAC ATATGGGGATTTTGGGAAAGCTGCGCAGCAACCTGATGGAC < 41bp 0.528755890154556 0.738992935919092 0.2581008 0.20650348 prediction 0.420474091529072 Functional Gain - CA2 ENSG00000104267 CDS Human protein_coding chr8:86386599 chr8:86386602 nonsynonymous SNV 0.803 1 24 hm5C_associated_SNPs_124495 0 0 1 0 2 CA2 chr8:86386553 3'AG 86386553 Downstream 50bp
chr8 86386602 86386602 1 + T C UCEC 86386599 + 86386579 86386619 41 ATATGGGGATTTTGGGAAAGCTGTGCAGCAACCTGATGGAC ATATGGGGATTTTGGGAAAGCTGCGCAGCAACCTGATGGAC < 41bp 0.528755890154556 0.738992935919092 0.2581008 0.20650348 prediction 0.420474091529072 Functional Gain - CA2 ENSG00000104267 CDS Human protein_coding chr8:86386599 chr8:86386602 nonsynonymous SNV 0.803 1 24 hm5C_associated_SNPs_124495 0 0 1 0 2 CA2 chr8:86386645 5'GT 86386645 Upstream 44bp
chr2 79350014 79350014 1 + C T UCEC 79350013 + 79349993 79350033 41 GTCCCTGGTCTCCTACAAGTCCTGGGGCATTGGAGCCCCAA GTCCCTGGTCTCCTACAAGTCTTGGGGCATTGGAGCCCCAA < 41bp 0.59076503198809 0.800990235109566 0.14944729 0.1221233 prediction 0.420450406242951 Functional Gain - REG1A ENSG00000115386 CDS Human protein_coding chr2:79350013 chr2:79350014 synonymous SNV . 0 22 hm5C_associated_SNPs_124501 0 0 0 0 2 REG1A chr2:79349967 3'AG 79349967 Downstream 48bp
chr2 79350014 79350014 1 + C T UCEC 79350013 + 79349993 79350033 41 GTCCCTGGTCTCCTACAAGTCCTGGGGCATTGGAGCCCCAA GTCCCTGGTCTCCTACAAGTCTTGGGGCATTGGAGCCCCAA < 41bp 0.59076503198809 0.800990235109566 0.14944729 0.1221233 prediction 0.420450406242951 Functional Gain - REG1A ENSG00000115386 CDS Human protein_coding chr2:79350013 chr2:79350014 synonymous SNV . 0 22 hm5C_associated_SNPs_124501 0 0 0 0 2 REG1A chr2:79350078 5'GT 79350078 Upstream 65bp
chr10 6263702 6263702 1 + C A COAD 6263701 + 6263681 6263721 41 GTACTATTACCGCTACCCCACCGGGGAGGTGAGCGCAGGCT GTACTATTACCGCTACCCCACAGGGGAGGTGAGCGCAGGCT < 41bp 0.448154676195993 0.710223230402979 0.8075962 0.8919957 prediction 0.420446460805958 Functional Gain - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6263701 chr10:6263702 synonymous SNV . 0 22 hm5C_associated_SNPs_124503 0 0 1 0 2 PFKFB3 chr10:6263604 3'AG 6263604 Downstream 99bp
chr10 6263702 6263702 1 + C A COAD 6263701 + 6263681 6263721 41 GTACTATTACCGCTACCCCACCGGGGAGGTGAGCGCAGGCT GTACTATTACCGCTACCCCACAGGGGAGGTGAGCGCAGGCT < 41bp 0.448154676195993 0.710223230402979 0.8075962 0.8919957 prediction 0.420446460805958 Functional Gain - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6263701 chr10:6263702 synonymous SNV . 0 22 hm5C_associated_SNPs_124503 0 0 1 0 2 PFKFB3 chr10:6263708 5'GT 6263708 Upstream 7bp
chrX 140993296 140993296 1 + C A SKCM 140993295 + 140993275 140993315 41 GAGGACTCCCAGTCTCCTCTCCAGATTCCCCAGAGTTCTCC GAGGACTCCCAGTCTCCTCTCAAGATTCCCCAGAGTTCTCC < 41bp 0.631973031119963 0.842195421212463 0.785298 0.49340895 prediction 0.420444780185 Functional Gain - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140993295 chrX:140993296 nonsynonymous SNV 0.050 1 22 hm5C_associated_SNPs_124504 0 0 0 0 1 MAGEC1 chrX:140993333 5'GT 140993333 Upstream 38bp
chr9 131050939 131050939 1 + C T COAD 131050938 + 131050918 131050958 41 TCCTTCCTTTCAGCTGTGATCCGAGGTGTCACCACCAAAGA TCCTTCCTTTCAGCTGTGATCTGAGGTGTCACCACCAAAGA < 41bp 0.487683910089525 0.710222194352308 0.94467294 0.8209641 prediction 0.420444388704615 Functional Gain - SWI5 ENSG00000175854 CDS Human protein_coding chr9:131050938 chr9:131050939 stopgain 0.918 1 22 hm5C_associated_SNPs_124505 0 0 1 0 1 SWI5 chr9:131050931 3'AG 131050931 Downstream 9bp
chr11 119170269 119170269 1 + T G UCEC 119170266 + 119170246 119170286 41 CCATTCCCGCGGAGAATCAACTCTGAACGGAAAGCTGGCAG CCATTCCCGCGGAGAATCAACTCGGAACGGAAAGCTGGCAG < 41bp 0.324037229887724 0.710200190310816 0.27652755 0.53067654 prediction 0.420400380621632 Functional Gain - CBL ENSG00000110395 CDS Human protein_coding chr11:119170266 chr11:119170269 synonymous SNV . 0 24 hm5C_associated_SNPs_124512 0 0 1 0 1 CBL chr11:119170205 3'AG 119170205 Downstream 65bp
chrX 149931146 149931146 1 + T C BLCA 149931144 + 149931124 149931164 41 CACGCGCGCCGTCTCATCCTCATCTGAGCGGGGCTCCTCGC CACGCGCGCCGTCTCATCCTCACCTGAGCGGGGCTCCTCGC < 41bp 0.454210300754038 0.710199895577573 0.3684533 0.28449523 prediction 0.420399791155147 Functional Gain - MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149931144 chrX:149931146 nonsynonymous SNV 0.127 2 23 hm5C_associated_SNPs_124513 0 0 1 0 1 MTMR1 chrX:149931210 5'GT 149931210 Upstream 65bp
chr17 7606401 7606401 1 + C T rs35082161 7606400 + 7606380 7606420 41 CAATGATGGGAAGCCGGAGCCCGTGTTGAGTTTTCTGCCCC CAATGATGGGAAGCCGGAGCCTGTGTTGAGTTTTCTGCCCC < 41bp 0.463308534029076 0.710192961633898 0.33770603 0.2439563 prediction 0.420385923267795 Functional Gain - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7606400 chr17:7606401 synonymous SNV . 0 22 hm5C_associated_SNPs_124515 1 0 1 0 2 WRAP53 chr17:7606311 3'AG 7606311 Downstream 91bp
chr17 7606401 7606401 1 + C T rs35082161 7606400 + 7606380 7606420 41 CAATGATGGGAAGCCGGAGCCCGTGTTGAGTTTTCTGCCCC CAATGATGGGAAGCCGGAGCCTGTGTTGAGTTTTCTGCCCC < 41bp 0.463308534029076 0.710192961633898 0.33770603 0.2439563 prediction 0.420385923267795 Functional Gain - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7606400 chr17:7606401 synonymous SNV . 0 22 hm5C_associated_SNPs_124515 1 0 1 0 2 WRAP53 chr17:7606445 5'GT 7606445 Upstream 45bp
chr5 122153040 122153040 1 + T C COAD 122153037 + 122153017 122153057 41 CAACTTAGGAAACTTCATGTCAGTGTTGAAGCCTTGGTCTG CAACTTAGGAAACTTCATGTCAGCGTTGAAGCCTTGGTCTG < 41bp 0.495634369449764 0.710184378803203 0.025288045 0.074679464 prediction 0.420368757606407 Functional Gain - SNX2 ENSG00000205302 CDS Human protein_coding chr5:122153037 chr5:122153040 synonymous SNV . 0 24 hm5C_associated_SNPs_124518 0 0 1 0 2 SNX2 chr5:122152975 3'AG 122152975 Downstream 66bp
chr5 122153040 122153040 1 + T C COAD 122153037 + 122153017 122153057 41 CAACTTAGGAAACTTCATGTCAGTGTTGAAGCCTTGGTCTG CAACTTAGGAAACTTCATGTCAGCGTTGAAGCCTTGGTCTG < 41bp 0.495634369449764 0.710184378803203 0.025288045 0.074679464 prediction 0.420368757606407 Functional Gain - SNX2 ENSG00000205302 CDS Human protein_coding chr5:122153037 chr5:122153040 synonymous SNV . 0 24 hm5C_associated_SNPs_124518 0 0 1 0 2 SNX2 chr5:122153068 5'GT 122153068 Upstream 29bp
chr19 6935063 6935063 1 + C T UCEC 6935062 + 6935042 6935082 41 GAGGCTTTCCAGTGTTAATGCCGAAGTCTCAACGCTAAAAG GAGGCTTTCCAGTGTTAATGCTGAAGTCTCAACGCTAAAAG < 41bp 0.61487177938863 0.825054417866492 0.0865486 0.06934762 prediction 0.420365276955723 Functional Gain - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6935062 chr19:6935063 synonymous SNV . 0 22 hm5C_associated_SNPs_124519 0 0 0 0 2 ADGRE1 chr19:6934998 3'AG 6934998 Downstream 66bp
chr19 6935063 6935063 1 + C T UCEC 6935062 + 6935042 6935082 41 GAGGCTTTCCAGTGTTAATGCCGAAGTCTCAACGCTAAAAG GAGGCTTTCCAGTGTTAATGCTGAAGTCTCAACGCTAAAAG < 41bp 0.61487177938863 0.825054417866492 0.0865486 0.06934762 prediction 0.420365276955723 Functional Gain - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6935062 chr19:6935063 synonymous SNV . 0 22 hm5C_associated_SNPs_124519 0 0 0 0 2 ADGRE1 chr19:6935089 5'GT 6935089 Upstream 27bp
chr15 41641419 41641419 1 + C T STAD 41641418 + 41641398 41641438 41 AGGAGAAGGTGCAAGACTGTCCGTGTGGACCCTGACTCACA AGGAGAAGGTGCAAGACTGTCTGTGTGGACCCTGACTCACA < 41bp 0.468735098364869 0.710177847292292 0.2763759 0.3068544 prediction 0.420355694584583 Functional Gain - NUSAP1 ENSG00000137804 CDS Human protein_coding chr15:41641418 chr15:41641419 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_124521 0 0 1 0 1 NUSAP1 chr15:41641439 5'GT 41641439 Upstream 21bp
chr18 73856747 73856747 1 + T A rs11874452 73856743 + 73856723 73856763 41 AGGCTTTACAGAAGCAGAATCAGGTTGTGGTTGCAGAAAAA AGGCTTTACAGAAGCAGAATCAGGATGTGGTTGCAGAAAAA < 41bp 0.436522564891107 0.71017716121439 0.39964512 0.88030374 prediction 0.420354322428779 Functional Gain - LOC339298 ENSG00000263547 ncRNA_exonic Human processed_transcript chr18:73856743 chr18:73856747 . . 0 25 hm5C_associated_SNPs_124522 0 0 0 0 1 LOC339298 chr18:73856712 3'AG 73856712 Downstream 36bp
chr19 44469186 44469186 1 + C T STAD 44469185 + 44469165 44469205 41 CCTGCCCAGAGGAAGCTGTACCGAGATGTGATGCTAGAGAA CCTGCCCAGAGGAAGCTGTACTGAGATGTGATGCTAGAGAA < 41bp 0.606697211423674 0.816867415356478 0.10276541 0.17850992 prediction 0.420340407865607 Functional Gain - ZNF221 ENSG00000159905 CDS Human protein_coding chr19:44469185 chr19:44469186 stopgain 0.994 0 22 hm5C_associated_SNPs_124524 0 0 1 0 2 ZNF221 chr19:44469102 3'AG 44469102 Downstream 85bp
chr19 44469186 44469186 1 + C T STAD 44469185 + 44469165 44469205 41 CCTGCCCAGAGGAAGCTGTACCGAGATGTGATGCTAGAGAA CCTGCCCAGAGGAAGCTGTACTGAGATGTGATGCTAGAGAA < 41bp 0.606697211423674 0.816867415356478 0.10276541 0.17850992 prediction 0.420340407865607 Functional Gain - ZNF221 ENSG00000159905 CDS Human protein_coding chr19:44469185 chr19:44469186 stopgain 0.994 0 22 hm5C_associated_SNPs_124524 0 0 1 0 2 ZNF221 chr19:44469228 5'GT 44469228 Upstream 43bp
chrX 99920609 99920609 1 + C A LIHC 99920608 + 99920588 99920628 41 ATTCGTTACACTGCCTATGACCGAGCCTACAACCGGGCCAG ATTCGTTACACTGCCTATGACAGAGCCTACAACCGGGCCAG < 41bp 0.430871307874157 0.710167029136069 0.30496612 0.4154287 prediction 0.420334058272138 Functional Gain - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99920608 chrX:99920609 synonymous SNV . 0 22 hm5C_associated_SNPs_124525 0 0 0 0 1 SRPX2 chrX:99920654 5'GT 99920654 Upstream 46bp
chrX 54837342 54837342 1 + T C STAD 54837339 + 54837319 54837359 41 TGGCCGAAGGGTCTCAAAGGCCCTAATGGCCTCAATGGCCC TGGCCGAAGGGTCTCAAAGGCCCCAATGGCCTCAATGGCCC < 41bp 0.552371924632442 0.762535062462414 0.07818183 0.052361965 prediction 0.420326275659944 Functional Gain - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54837339 chrX:54837342 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_124527 0 0 1 0 1 MAGED2 chrX:54837254 3'AG 54837254 Downstream 89bp
chr5 156741444 156741444 1 + C T OV 156741443 + 156741423 156741463 41 GCGGGGTCTGCAGCTTCTATCCAAGTGGAGCGCCCACGTCA GCGGGGTCTGCAGCTTCTATCTAAGTGGAGCGCCCACGTCA < 41bp 0.456243469488674 0.710161505406162 0.92811906 0.8895247 prediction 0.420323010812324 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156741443 chr5:156741444 synonymous SNV . 0 22 hm5C_associated_SNPs_124528 0 0 1 0 2 CYFIP2 chr5:156741352 3'AG 156741352 Downstream 93bp
chr5 156741444 156741444 1 + C T OV 156741443 + 156741423 156741463 41 GCGGGGTCTGCAGCTTCTATCCAAGTGGAGCGCCCACGTCA GCGGGGTCTGCAGCTTCTATCTAAGTGGAGCGCCCACGTCA < 41bp 0.456243469488674 0.710161505406162 0.92811906 0.8895247 prediction 0.420323010812324 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156741443 chr5:156741444 synonymous SNV . 0 22 hm5C_associated_SNPs_124528 0 0 1 0 2 CYFIP2 chr5:156741471 5'GT 156741471 Upstream 28bp
chr16 68380178 68380178 1 + A G UCEC 68380175 + 68380155 68380195 41 CTGATCGATACGTCCAGGCTCTGAGGACCGTAAGTGTCCAG CTGATCGATACGTCCAGGCTCTGGGGACCGTAAGTGTCCAG < 41bp 0.592592930969078 0.802750295534907 0.10874134 0.36939126 prediction 0.420314729131658 Functional Gain - PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68380175 chr16:68380178 nonsynonymous SNV 0.953 0 24 hm5C_associated_SNPs_124531 0 0 1 0 1 PRMT7 chr16:68380183 5'GT 68380183 Upstream 6bp
chr13 114294439 114294439 1 + C T HNSC 114294438 + 114294418 114294458 41 CGCCTCCTGCCTTGCAGTGACCTGACCAACGGTGCAGATGG CGCCTCCTGCCTTGCAGTGACTTGACCAACGGTGCAGATGG < 41bp 0.456464018728582 0.710154449466317 0.4030153 0.3351984 prediction 0.420308898932634 Functional Gain - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114294438 chr13:114294439 synonymous SNV . 0 22 hm5C_associated_SNPs_124532 0 0 1 0 1 TFDP1 chr13:114294435 3'AG 114294435 Downstream 5bp
chr22 29695662 29695662 1 + C T COAD 29695661 + 29695641 29695681 41 CCTCATGGATCGTGGTGGTCCCGGTGGAATGTTCAGAGGTG CCTCATGGATCGTGGTGGTCCTGGTGGAATGTTCAGAGGTG < 41bp 0.593919785010252 0.804068378645849 0.47372404 0.4629758 prediction 0.420297187271194 Functional Gain - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695661 chr22:29695662 synonymous SNV . 0 22 hm5C_associated_SNPs_124534 0 0 1 0 1 EWSR1 chr22:29695589 3'AG 29695589 Downstream 74bp
chr16 30096328 30096328 1 + C T SKCM 30096327 + 30096307 30096347 41 TCATCATCTTTGAGGCTGCTCCCCAAGAGACACGGGGCATC TCATCATCTTTGAGGCTGCTCTCCAAGAGACACGGGGCATC < 41bp 0.631093675724508 0.841229145924288 0.19797248 0.95645523 prediction 0.420270940399561 Functional Gain - PPP4C ENSG00000149923 CDS Human protein_coding chr16:30096327 chr16:30096328 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_124539 0 0 1 1 1 PPP4C chr16:30096254 3'AG 30096254 Downstream 75bp
chr11 66299445 66299445 1 + A G rs150553044 66299442 + 66299422 66299462 41 GTGCTGGTGCTTCGAGAAGGCCAAAGTGCACCCCTGCTGAG GTGCTGGTGCTTCGAGAAGGCCAGAGTGCACCCCTGCTGAG < 41bp 0.589480772422446 0.799615967359866 0.57232374 0.93046296 prediction 0.420270389874839 Functional Gain - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66299442 chr11:66299445 synonymous SNV . 0 24 hm5C_associated_SNPs_124540 1 0 0 1 1 BBS1 chr11:66299422 3'AG 66299422 Downstream 24bp
chr1 156096691 156096691 1 + A G rs148559653 156096688 + 156096668 156096708 41 GGCCTGGGGCAGGACACGGGCGAAGCCAGGGTCTCCCCTGT GGCCTGGGGCAGGACACGGGCGAGGCCAGGGTCTCCCCTGT < 41bp 0.599419479438421 0.809552767387028 0.67702407 0.8866942 prediction 0.420266575897214 Functional Gain - LMNA ENSG00000160789 CDS Human protein_coding chr1:156096688 chr1:156096691 nonsynonymous SNV 0.125 1 24 hm5C_associated_SNPs_124541 0 0 0 0 1 LMNA chr1:156096706 5'GT 156096706 Upstream 16bp
chr1 220804450 220804450 1 + C T SARC 220804449 + 220804429 220804469 41 AGCCATATACTGAGCCTGATCCGGATTTCAATGACACAAAA AGCCATATACTGAGCCTGATCTGGATTTCAATGACACAAAA < 41bp 0.614156646364553 0.824277312203126 0.6294719 0.27836543 prediction 0.420241331677147 Functional Gain - MARK1 ENSG00000116141 CDS Human protein_coding chr1:220804449 chr1:220804450 nonsynonymous SNV 0.852 0 22 hm5C_associated_SNPs_124545 0 0 1 0 2 MARK1 chr1:220804377 3'AG 220804377 Downstream 74bp
chr1 220804450 220804450 1 + C T SARC 220804449 + 220804429 220804469 41 AGCCATATACTGAGCCTGATCCGGATTTCAATGACACAAAA AGCCATATACTGAGCCTGATCTGGATTTCAATGACACAAAA < 41bp 0.614156646364553 0.824277312203126 0.6294719 0.27836543 prediction 0.420241331677147 Functional Gain - MARK1 ENSG00000116141 CDS Human protein_coding chr1:220804449 chr1:220804450 nonsynonymous SNV 0.852 0 22 hm5C_associated_SNPs_124545 0 0 1 0 2 MARK1 chr1:220804476 5'GT 220804476 Upstream 27bp
chr11 57116109 57116109 1 + T A STAD 57116107 + 57116087 57116127 41 GTGCTCACCCACAGGCCCATCATGATGGAAGCTGAGAACTT GTGCTCACCCACAGGCCCATCAAGATGGAAGCTGAGAACTT < 41bp 0.498427401829108 0.710118627464366 0.17896166 0.26910028 prediction 0.420237254928732 Functional Gain - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57116107 chr11:57116109 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_124547 0 0 0 0 2 P2RX3 chr11:57116101 3'AG 57116101 Downstream 9bp
chr11 57116109 57116109 1 + T A STAD 57116107 + 57116087 57116127 41 GTGCTCACCCACAGGCCCATCATGATGGAAGCTGAGAACTT GTGCTCACCCACAGGCCCATCAAGATGGAAGCTGAGAACTT < 41bp 0.498427401829108 0.710118627464366 0.17896166 0.26910028 prediction 0.420237254928732 Functional Gain - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57116107 chr11:57116109 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_124547 0 0 0 0 2 P2RX3 chr11:57116178 5'GT 57116178 Upstream 70bp
chr1 152957747 152957747 1 + C A LUAD 152957743 + 152957723 152957763 41 AGAAGCAGCCTTGCACCCCACCCCCTCAGCCTCAGCAGCAG AGAAGCAGCCTTGCACCCCACCCCATCAGCCTCAGCAGCAG < 41bp 0.279657613792643 0.7101184889133 0.0118251145 0.031443596 prediction 0.4202369778266 Functional Gain - SPRR1A ENSG00000169474 CDS Human protein_coding chr1:152957743 chr1:152957747 nonsynonymous SNV 0.162 3 25 hm5C_associated_SNPs_124548 0 0 0 0 2 SPRR1A chr1:152957674 3'AG 152957674 Downstream 74bp
chr1 152957747 152957747 1 + C A LUAD 152957743 + 152957723 152957763 41 AGAAGCAGCCTTGCACCCCACCCCCTCAGCCTCAGCAGCAG AGAAGCAGCCTTGCACCCCACCCCATCAGCCTCAGCAGCAG < 41bp 0.279657613792643 0.7101184889133 0.0118251145 0.031443596 prediction 0.4202369778266 Functional Gain - SPRR1A ENSG00000169474 CDS Human protein_coding chr1:152957743 chr1:152957747 nonsynonymous SNV 0.162 3 25 hm5C_associated_SNPs_124548 0 0 0 0 2 SPRR1A chr1:152957688 3'AG 152957688 Downstream 60bp
chr16 46934625 46934625 1 + T G STAD 46934621 + 46934601 46934641 41 CACTATGCACCTACCCAAACCTGCTGGACAGCCCCAGCTTC CACTATGCACCTACCCAAACCTGCGGGACAGCCCCAGCTTC < 41bp 0.505545149673297 0.715656235508026 0.1251865 0.30757302 prediction 0.420222171669459 Functional Gain - GPT2 ENSG00000166123 CDS Human protein_coding chr16:46934621 chr16:46934625 nonsynonymous SNV 0.934 2 25 hm5C_associated_SNPs_124549 0 0 1 0 2 GPT2 chr16:46934594 3'AG 46934594 Downstream 32bp
chr16 46934625 46934625 1 + T G STAD 46934621 + 46934601 46934641 41 CACTATGCACCTACCCAAACCTGCTGGACAGCCCCAGCTTC CACTATGCACCTACCCAAACCTGCGGGACAGCCCCAGCTTC < 41bp 0.505545149673297 0.715656235508026 0.1251865 0.30757302 prediction 0.420222171669459 Functional Gain - GPT2 ENSG00000166123 CDS Human protein_coding chr16:46934621 chr16:46934625 nonsynonymous SNV 0.934 2 25 hm5C_associated_SNPs_124549 0 0 1 0 2 GPT2 chr16:46934702 5'GT 46934702 Upstream 78bp
chr6 107811866 107811866 1 + A G KIRC 107811863 + 107811843 107811883 41 GGAGACCTCCCGAAAATAAACGGAGCAGGAAGCCGGCTCAC GGAGACCTCCCGAAAATAAACGGGGCAGGAAGCCGGCTCAC < 41bp 0.483122732038692 0.710110724841784 0.8912468 0.9000032 prediction 0.420221449683567 Functional Gain - SOBP ENSG00000112320 CDS Human protein_coding chr6:107811863 chr6:107811866 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_124550 0 0 1 0 1 SOBP chr6:107811916 5'GT 107811916 Upstream 51bp
chr17 7577581 7577581 1 - A G COAD 7577584 - 7577564 7577604 41 GCTCTGACTGTACCACCATCCACTACAACTACATGTGTAAC GCTCTGACTGTACCACCATCCACCACAACTACATGTGTAAC < 41bp 0.519379769849923 0.729487060342233 0.21318552 0.0077467263 prediction 0.420214580984621 Functional Gain - TP53 ENSG00000141510 CDS Human protein_coding chr17:7577584 chr17:7577581 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_124552 15 0 1 0 1 TP53 chr17:7577608 3'AG 7577608 Downstream 28bp
chr6 72003267 72003267 1 + T C UCEC 72003265 + 72003245 72003285 41 GATATCCGATATCAAAATGACTTGAGCAATCTTCGTTTTTA GATATCCGATATCAAAATGACTCGAGCAATCTTCGTTTTTA < 41bp 0.413471368875676 0.710084405502285 0.0916875 0.14407605 prediction 0.42016881100457 Functional Gain - OGFRL1 ENSG00000119900 CDS Human protein_coding chr6:72003265 chr6:72003267 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_124559 0 0 1 0 2 OGFRL1 chr6:72003236 3'AG 72003236 Downstream 32bp
chr6 72003267 72003267 1 + T C UCEC 72003265 + 72003245 72003285 41 GATATCCGATATCAAAATGACTTGAGCAATCTTCGTTTTTA GATATCCGATATCAAAATGACTCGAGCAATCTTCGTTTTTA < 41bp 0.413471368875676 0.710084405502285 0.0916875 0.14407605 prediction 0.42016881100457 Functional Gain - OGFRL1 ENSG00000119900 CDS Human protein_coding chr6:72003265 chr6:72003267 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_124559 0 0 1 0 2 OGFRL1 chr6:72003314 5'GT 72003314 Upstream 48bp
chr13 24242173 24242173 1 + C T PAAD 24242172 + 24242152 24242192 41 AGGAGGCCTGCAGCCCCAACCCGGCGACTCTTGGTTGTGGG AGGAGGCCTGCAGCCCCAACCTGGCGACTCTTGGTTGTGGG < 41bp 0.456973521488194 0.710083027573796 0.7019714 0.35008216 prediction 0.420166055147592 Functional Gain - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24242172 chr13:24242173 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_124560 0 0 1 0 2 TNFRSF19 chr13:24242119 3'AG 24242119 Downstream 55bp
chr13 24242173 24242173 1 + C T PAAD 24242172 + 24242152 24242192 41 AGGAGGCCTGCAGCCCCAACCCGGCGACTCTTGGTTGTGGG AGGAGGCCTGCAGCCCCAACCTGGCGACTCTTGGTTGTGGG < 41bp 0.456973521488194 0.710083027573796 0.7019714 0.35008216 prediction 0.420166055147592 Functional Gain - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24242172 chr13:24242173 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_124560 0 0 1 0 2 TNFRSF19 chr13:24242221 5'GT 24242221 Upstream 49bp
chr19 8118000 8118000 1 + A G rs960173 8117997 + 8117977 8118017 41 GAGCCTGGGCCCCCGCTGTCCACACCCAAGGTACTGTGTTC GAGCCTGGGCCCCCGCTGTCCACGCCCAAGGTACTGTGTTC < 41bp 0.457537415016977 0.710082035464829 0.019013762 0.07067573 prediction 0.420164070929657 Functional Gain - CCL25 ENSG00000131142 CDS Human protein_coding chr19:8117997 chr19:8118000 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_124561 0 0 0 0 1 CCL25 chr19:8118006 5'GT 8118006 Upstream 7bp
chr20 61299185 61299185 1 + T G LGG 61299181 + 61299161 61299201 41 GAACACTACAGCCCTGTGTGCGGCTCGGACGGCCTCATGTA GAACACTACAGCCCTGTGTGCGGCGCGGACGGCCTCATGTA < 41bp 0.52559408023507 0.73567527600659 0.31025684 0.7215914 prediction 0.420162391543041 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61299181 chr20:61299185 nonsynonymous SNV 0.036 0 25 hm5C_associated_SNPs_124563 0 0 1 1 1 SLCO4A1 chr20:61299262 5'GT 61299262 Upstream 78bp
chr4 156651263 156651263 1 + C T LUSC 156651262 + 156651242 156651282 41 AAACTTCCCTAGTGAAATCCCCGGAATCTGCCATTTTCTGG AAACTTCCCTAGTGAAATCCCTGGAATCTGCCATTTTCTGG < 41bp 0.468546413383302 0.710078365939202 0.10588485 0.12755391 prediction 0.420156731878405 Functional Gain - GUCY1A3 ENSG00000164116 CDS Human protein_coding chr4:156651262 chr4:156651263 synonymous SNV . 0 22 hm5C_associated_SNPs_124564 0 0 0 0 1 GUCY1A3 chr4:156651182 3'AG 156651182 Downstream 82bp
chr15 34520011 34520011 1 + T C KIRC 34520009 + 34519989 34520029 41 TATGATGGTGTGTATGATGGCCTGGCGACCCATTCAGGCAC TATGATGGTGTGTATGATGGCCCGGCGACCCATTCAGGCAC < 41bp 0.451597752915098 0.710075493180053 0.33466375 0.36489534 prediction 0.420150986360107 Functional Gain - EMC4 ENSG00000128463 CDS Human protein_coding chr15:34520009 chr15:34520011 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_124566 0 0 1 0 1 EMC4 chr15:34520047 5'GT 34520047 Upstream 37bp
chr9 131016963 131016963 1 + T C ESCA 131016961 + 131016941 131016981 41 GTCAGGCAAGTCCATCCCGTCCTGAGAGCCCCAGGCCCCCC GTCAGGCAAGTCCATCCCGTCCCGAGAGCCCCAGGCCCCCC < 41bp 0.602086815420363 0.812160521642195 0.0898993 0.104497224 prediction 0.420147412443664 Functional Gain - DNM1 ENSG00000106976 CDS Human protein_coding chr9:131016961 chr9:131016963 synonymous SNV . 0 23 hm5C_associated_SNPs_124567 0 0 1 0 1 DNM1 chr9:131016933 3'AG 131016933 Downstream 31bp
chr15 41763545 41763545 1 + C T BLCA 41763544 + 41763524 41763564 41 CACAACAGCAAACCAGTTTACCGGGTTGGTATTTCTTCCCT CACAACAGCAAACCAGTTTACTGGGTTGGTATTTCTTCCCT < 41bp 0.594897714683027 0.80496717524542 0.7168995 0.28434718 prediction 0.420138921124785 Functional Gain - RTF1 ENSG00000137815 CDS Human protein_coding chr15:41763544 chr15:41763545 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_124569 0 0 1 0 1 RTF1 chr15:41763547 5'GT 41763547 Upstream 3bp
chr10 1130477 1130477 1 + C T rs145160560 1130476 + 1130456 1130496 41 GGTGCTCGGGACTGCATCAGCCGGTGAGTCGCACACGGACC GGTGCTCGGGACTGCATCAGCTGGTGAGTCGCACACGGACC < 41bp 0.579371158681552 0.789440497777654 0.914744 0.91532445 prediction 0.420138678192203 Functional Gain - WDR37 ENSG00000047056 CDS Human protein_coding chr10:1130476 chr10:1130477 synonymous SNV . 0 22 hm5C_associated_SNPs_124570 0 0 1 0 1 WDR37 chr10:1130478 5'GT 1130478 Upstream 2bp
chr15 23437917 23437917 1 + C A BLCA 23437916 + 23437896 23437936 41 GCCAAGAACTAGCAGTAGTCCCAGACTCGAGGTCTGTAAAA GCCAAGAACTAGCAGTAGTCCAAGACTCGAGGTCTGTAAAA < 41bp 0.570687095650568 0.780755710131875 0.12464419 0.17561376 prediction 0.420137228962613 Functional Gain - GOLGA8EP ENSG00000175676 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:23437916 chr15:23437917 . . 0 22 hm5C_associated_SNPs_124571 0 0 0 0 2 GOLGA8EP chr15:23437889 3'AG 23437889 Downstream 29bp
chr15 23437917 23437917 1 + C A BLCA 23437916 + 23437896 23437936 41 GCCAAGAACTAGCAGTAGTCCCAGACTCGAGGTCTGTAAAA GCCAAGAACTAGCAGTAGTCCAAGACTCGAGGTCTGTAAAA < 41bp 0.570687095650568 0.780755710131875 0.12464419 0.17561376 prediction 0.420137228962613 Functional Gain - GOLGA8EP ENSG00000175676 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:23437916 chr15:23437917 . . 0 22 hm5C_associated_SNPs_124571 0 0 0 0 2 GOLGA8EP chr15:23437969 5'GT 23437969 Upstream 53bp
chr17 47236504 47236504 1 + C A LUAD 47236503 + 47236483 47236523 41 CTGATCATTTCTACCAGTGACCGGAAGCTGTTGAAGTTCAT CTGATCATTTCTACCAGTGACAGGAAGCTGTTGAAGTTCAT < 41bp 0.43824208312827 0.710068488716591 0.3044843 0.2340425 prediction 0.420136977433182 Functional Gain - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47236503 chr17:47236504 synonymous SNV . 0 22 hm5C_associated_SNPs_124572 0 0 0 0 1 B4GALNT2 chr17:47236579 5'GT 47236579 Upstream 76bp
chr3 119528984 119528984 1 + C G LUSC 119528980 + 119528960 119529000 41 TGCGAGATCACCCGGAAGACCCGGCGACAGTGCCAGGCCTG TGCGAGATCACCCGGAAGACCCGGGGACAGTGCCAGGCCTG < 41bp 0.67306300016431 0.883128695135773 0.894799 0.9171239 prediction 0.420131389942926 Functional Gain - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119528980 chr3:119528984 nonsynonymous SNV 0.980 5 25 hm5C_associated_SNPs_124573 0 0 1 0 1 NR1I2 chr3:119528908 3'AG 119528908 Downstream 77bp
chr1 20005433 20005433 1 + C G SKCM 20005429 + 20005409 20005449 41 CAGGCCGTGTGCGACTGCATCTCCCCAGGCCTCTTCGATGT CAGGCCGTGTGCGACTGCATCTCCGCAGGCCTCTTCGATGT < 41bp 0.412604463836006 0.710064554904581 0.07935265 0.31248546 prediction 0.420129109809162 Functional Gain - HTR6 ENSG00000158748 CDS Human protein_coding chr1:20005429 chr1:20005433 nonsynonymous SNV 0.952 1 25 hm5C_associated_SNPs_124574 0 0 0 0 1 HTR6 chr1:20005412 3'AG 20005412 Downstream 22bp
chr17 9549381 9549381 1 + C G rs115314145 9549380 + 9549360 9549400 41 TCCGGGCCGCGCCGAGGTCACCGAGCAGCTGGCGGCGCTGG TCCGGGCCGCGCCGAGGTCACGGAGCAGCTGGCGGCGCTGG < 41bp 0.679787307151027 0.88984739376079 0.8837981 0.92355645 prediction 0.420120173219525 Functional Gain - USP43 ENSG00000154914 CDS Human protein_coding chr17:9549380 chr17:9549381 synonymous SNV . 0 22 hm5C_associated_SNPs_124575 0 0 0 0 1 USP43 chr17:9549453 5'GT 9549453 Upstream 73bp
chr5 140037231 140037231 1 + T G LUAD 140037229 + 140037209 140037249 41 AGGGAACCCGTAACAAGAAGCTTAAGAAGAAGGATAAAGGT AGGGAACCCGTAACAAGAAGCTGAAGAAGAAGGATAAAGGT < 41bp 0.370531485401672 0.71005856480632 0.10693899 0.6448289 prediction 0.420117129612641 Functional Gain - IK ENSG00000113141 CDS Human protein_coding chr5:140037229 chr5:140037231 synonymous SNV . 0 23 hm5C_associated_SNPs_124576 0 0 1 0 2 IK chr5:140037139 3'AG 140037139 Downstream 93bp
chr5 140037231 140037231 1 + T G LUAD 140037229 + 140037209 140037249 41 AGGGAACCCGTAACAAGAAGCTTAAGAAGAAGGATAAAGGT AGGGAACCCGTAACAAGAAGCTGAAGAAGAAGGATAAAGGT < 41bp 0.370531485401672 0.71005856480632 0.10693899 0.6448289 prediction 0.420117129612641 Functional Gain - IK ENSG00000113141 CDS Human protein_coding chr5:140037229 chr5:140037231 synonymous SNV . 0 23 hm5C_associated_SNPs_124576 0 0 1 0 2 IK chr5:140037247 5'GT 140037247 Upstream 17bp
chr17 8222884 8222884 1 + C T rs115332545 8222883 + 8222863 8222903 41 TGAAGGACGGAGTCTGGAGTCCAGGGCTGCCCCCAAACACC TGAAGGACGGAGTCTGGAGTCTAGGGCTGCCCCCAAACACC < 41bp 0.610658029965244 0.820713575431129 0.74548066 0.40787345 prediction 0.420111090931769 Functional Gain - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8222883 chr17:8222884 synonymous SNV . 0 22 hm5C_associated_SNPs_124577 0 0 0 0 2 ARHGEF15 chr17:8222817 3'AG 8222817 Downstream 68bp
chr17 8222884 8222884 1 + C T rs115332545 8222883 + 8222863 8222903 41 TGAAGGACGGAGTCTGGAGTCCAGGGCTGCCCCCAAACACC TGAAGGACGGAGTCTGGAGTCTAGGGCTGCCCCCAAACACC < 41bp 0.610658029965244 0.820713575431129 0.74548066 0.40787345 prediction 0.420111090931769 Functional Gain - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8222883 chr17:8222884 synonymous SNV . 0 22 hm5C_associated_SNPs_124577 0 0 0 0 2 ARHGEF15 chr17:8222921 5'GT 8222921 Upstream 38bp
chr1 22923920 22923920 1 + T C SKCM 22923917 + 22923897 22923937 41 GGCCGGGCGGGCCGCAGTTTCACTCGGGAGATCGAGGCCTC GGCCGGGCGGGCCGCAGTTTCACCCGGGAGATCGAGGCCTC < 41bp 0.498254797155681 0.710051368075857 0.008901089 0.058084518 prediction 0.420102736151715 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22923917 chr1:22923920 synonymous SNV . 0 24 hm5C_associated_SNPs_124579 0 0 0 0 1 EPHA8 chr1:22923969 5'GT 22923969 Upstream 50bp
chr4 74364927 74364927 1 + T C BLCA 74364924 + 74364904 74364944 41 GTGACAGCTTTCACTACTTGCTGTACGCTAAGTGAAGAGTT GTGACAGCTTTCACTACTTGCTGCACGCTAAGTGAAGAGTT < 41bp 0.486998898553122 0.710047394852022 0.0791634 0.09541109 prediction 0.420094789704044 Functional Gain - AFM ENSG00000079557 CDS Human protein_coding chr4:74364924 chr4:74364927 synonymous SNV . 0 24 hm5C_associated_SNPs_124581 0 0 0 0 2 AFM chr4:74364831 3'AG 74364831 Downstream 97bp
chr4 74364927 74364927 1 + T C BLCA 74364924 + 74364904 74364944 41 GTGACAGCTTTCACTACTTGCTGTACGCTAAGTGAAGAGTT GTGACAGCTTTCACTACTTGCTGCACGCTAAGTGAAGAGTT < 41bp 0.486998898553122 0.710047394852022 0.0791634 0.09541109 prediction 0.420094789704044 Functional Gain - AFM ENSG00000079557 CDS Human protein_coding chr4:74364924 chr4:74364927 synonymous SNV . 0 24 hm5C_associated_SNPs_124581 0 0 0 0 2 AFM chr4:74364963 5'GT 74364963 Upstream 37bp
chr10 121214567 121214567 1 + C A LIHC 121214566 + 121214546 121214586 41 CCATGTCAGCTCGAACTCCACCGGAAGCAGCTAGTTTCGGC CCATGTCAGCTCGAACTCCACAGGAAGCAGCTAGTTTCGGC < 41bp 0.616437426069676 0.826481373711253 0.046975493 0.06584114 prediction 0.420087895283153 Functional Gain - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121214566 chr10:121214567 synonymous SNV . 0 22 hm5C_associated_SNPs_124582 0 0 0 0 1 GRK5 chr10:121214481 3'AG 121214481 Downstream 87bp
chr7 26217597 26217597 1 + T C STAD 26217594 + 26217574 26217614 41 ACTAAGAGAAAAGCACGAAGCTGTGGATCATAGTTCCCAGC ACTAAGAGAAAAGCACGAAGCTGCGGATCATAGTTCCCAGC < 41bp 0.526428040856816 0.736471948432349 0.030502647 0.07925132 prediction 0.420087815151066 Functional Gain - NFE2L3 ENSG00000050344 CDS Human protein_coding chr7:26217594 chr7:26217597 nonsynonymous SNV 0.604 0 24 hm5C_associated_SNPs_124583 0 0 0 0 1 NFE2L3 chr7:26217563 3'AG 26217563 Downstream 35bp
chr3 196386691 196386691 1 + C A LUSC 196386690 + 196386670 196386710 41 CAGCAGCCTCCCGCCCCACGCCCGGATGCTCACCCTGGATG CAGCAGCCTCCCGCCCCACGCACGGATGCTCACCCTGGATG < 41bp 0.633636281990886 0.843663096536312 0.3963084 0.55783826 prediction 0.420053629090852 Functional Gain - NRROS ENSG00000174004 CDS Human protein_coding chr3:196386690 chr3:196386691 synonymous SNV . 0 22 hm5C_associated_SNPs_124587 0 0 0 0 1 NRROS chr3:196386623 3'AG 196386623 Downstream 69bp
chr14 24877667 24877667 1 + T G LUAD 24877665 + 24877645 24877685 41 AATTCAAAGAGATTATCTAGCCTGGGAGCCACTGGGTCCCT AATTCAAAGAGATTATCTAGCCGGGGAGCCACTGGGTCCCT < 41bp 0.347084603630935 0.710023372169824 0.122773945 0.89359045 prediction 0.420046744339648 Functional Gain - NYNRIN ENSG00000205978 CDS Human protein_coding chr14:24877665 chr14:24877667 nonsynonymous SNV 0.065 0 23 hm5C_associated_SNPs_124588 0 0 1 0 1 NYNRIN chr14:24877733 5'GT 24877733 Upstream 67bp
chr5 170235704 170235704 1 + C A UCEC 170235703 + 170235683 170235723 41 CACTTTCCTGGTGGTGTTGTCCTGGGTTTCATTTTGGATCT CACTTTCCTGGTGGTGTTGTCATGGGTTTCATTTTGGATCT < 41bp 0.443907877135066 0.710022956147634 0.7424777 0.8919929 prediction 0.420045912295268 Functional Gain - GABRP ENSG00000094755 CDS Human protein_coding chr5:170235703 chr5:170235704 synonymous SNV . 0 22 hm5C_associated_SNPs_124589 0 0 0 0 1 GABRP chr5:170235756 5'GT 170235756 Upstream 53bp
chr17 32963124 32963124 1 + C A LUAD 32963123 + 32963103 32963143 41 GCTTCAGGCCCAGGTGGTGGCCAGCCTGGCCCTCTCCCTGC GCTTCAGGCCCAGGTGGTGGCAAGCCTGGCCCTCTCCCTGC < 41bp 0.444187127640161 0.710015458600421 0.24409962 0.54556555 prediction 0.420030917200841 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32963123 chr17:32963124 synonymous SNV . 0 22 hm5C_associated_SNPs_124592 0 0 0 0 2 TMEM132E chr17:32963026 3'AG 32963026 Downstream 99bp
chr17 32963124 32963124 1 + C A LUAD 32963123 + 32963103 32963143 41 GCTTCAGGCCCAGGTGGTGGCCAGCCTGGCCCTCTCCCTGC GCTTCAGGCCCAGGTGGTGGCAAGCCTGGCCCTCTCCCTGC < 41bp 0.444187127640161 0.710015458600421 0.24409962 0.54556555 prediction 0.420030917200841 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32963123 chr17:32963124 synonymous SNV . 0 22 hm5C_associated_SNPs_124592 0 0 0 0 2 TMEM132E chr17:32963217 5'GT 32963217 Upstream 94bp
chr12 131694853 131694853 1 + C G rs4759864 131694849 + 131694829 131694869 41 CTGATGAGAAGACAGTTGGGCAGACGTGGCTGGCTATTCCC CTGATGAGAAGACAGTTGGGCAGAGGTGGCTGGCTATTCCC < 41bp 0.423571671796058 0.710015195809193 0.8056013 0.85170686 prediction 0.420030391618385 Functional Gain - LINC01257 ENSG00000204603 ncRNA_exonic Human lincRNA chr12:131694849 chr12:131694853 . . 0 25 hm5C_associated_SNPs_124593 0 0 0 0 1 LINC01257 chr12:131694940 5'GT 131694940 Upstream 88bp
chr11 22291883 22291883 1 + C T SKCM 22291882 + 22291862 22291902 41 GCTTTGAATTGGTGGAGACGCCGAAAAGCTCGGACAAACTC GCTTTGAATTGGTGGAGACGCTGAAAAGCTCGGACAAACTC < 41bp 0.464033746254103 0.710011426249528 0.049747676 0.15720427 prediction 0.420022852499055 Functional Gain - ANO5 ENSG00000171714 CDS Human protein_coding chr11:22291882 chr11:22291883 stopgain 0.979 1 22 hm5C_associated_SNPs_124595 0 0 0 0 1 ANO5 chr11:22291858 3'AG 22291858 Downstream 26bp
chr2 27165488 27165488 1 + T C CESC 27165485 + 27165465 27165505 41 CATGCGCTGCCACGGCGTGCCACTGGTCACCATCAGCCGGG CATGCGCTGCCACGGCGTGCCACCGGTCACCATCAGCCGGG < 41bp 0.541990405523434 0.751997668939818 0.0352796 0.082205 prediction 0.420014526832767 Functional Gain - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27165485 chr2:27165488 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_124598 0 0 0 0 1 DPYSL5 chr2:27165411 3'AG 27165411 Downstream 78bp
chr19 50209359 50209359 1 + C T SKCM 50209358 + 50209338 50209378 41 GGCAGCTCTGACAGCTGCTCCCAGGTAAGGGTCAGGGGTCA GGCAGCTCTGACAGCTGCTCCTAGGTAAGGGTCAGGGGTCA < 41bp 0.466673072981656 0.710006570968669 0.85299814 0.7469548 prediction 0.420013141937338 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50209358 chr19:50209359 synonymous SNV . 0 22 hm5C_associated_SNPs_124599 0 0 0 0 1 CPT1C chr19:50209361 5'GT 50209361 Upstream 3bp
chr21 45810873 45810873 1 + C A LIHC 45810872 + 45810852 45810892 41 TGGAATCGCGTGGACATTGCCCGCAGTGAGATCTTCATGGA TGGAATCGCGTGGACATTGCCAGCAGTGAGATCTTCATGGA < 41bp 0.623172617035878 0.833177987577032 0.17037296 0.73580843 prediction 0.420010741082308 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45810872 chr21:45810873 nonsynonymous SNV 0.991 0 22 hm5C_associated_SNPs_124600 0 0 0 0 2 TRPM2 chr21:45810787 3'AG 45810787 Downstream 87bp
chr21 45810873 45810873 1 + C A LIHC 45810872 + 45810852 45810892 41 TGGAATCGCGTGGACATTGCCCGCAGTGAGATCTTCATGGA TGGAATCGCGTGGACATTGCCAGCAGTGAGATCTTCATGGA < 41bp 0.623172617035878 0.833177987577032 0.17037296 0.73580843 prediction 0.420010741082308 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45810872 chr21:45810873 nonsynonymous SNV 0.991 0 22 hm5C_associated_SNPs_124600 0 0 0 0 2 TRPM2 chr21:45810908 5'GT 45810908 Upstream 36bp
chr11 64137197 64137197 1 + C A rs373556651 64137196 + 64137176 64137216 41 CCTGTACGCCGACGACACGCCCGGGGCCCCGGTGAAAATCA CCTGTACGCCGACGACACGCCAGGGGCCCCGGTGAAAATCA < 41bp 0.621216404439791 0.831218493115786 0.5623627 0.8906246 prediction 0.42000417735199 Functional Gain - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137196 chr11:64137197 synonymous SNV . 0 22 hm5C_associated_SNPs_124601 0 0 0 0 1 RPS6KA4 chr11:64137171 3'AG 64137171 Downstream 27bp
chr1 111783982 111783982 1 + C A rs13721 111783978 + 111783958 111783998 41 TTCCTGAAAGGAGCCAAGATCACGCGGCTCCAGGATCAACA TTCCTGAAAGGAGCCAAGATCACGAGGCTCCAGGATCAACA < 41bp 0.7330381670126 0.943037078893658 0.81057346 0.8906548 prediction 0.419997823762114 Functional Gain - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111783978 chr1:111783982 synonymous SNV . 0 25 hm5C_associated_SNPs_124603 0 0 0 0 2 CHI3L2 chr1:111783949 3'AG 111783949 Downstream 34bp
chr1 111783982 111783982 1 + C A rs13721 111783978 + 111783958 111783998 41 TTCCTGAAAGGAGCCAAGATCACGCGGCTCCAGGATCAACA TTCCTGAAAGGAGCCAAGATCACGAGGCTCCAGGATCAACA < 41bp 0.7330381670126 0.943037078893658 0.81057346 0.8906548 prediction 0.419997823762114 Functional Gain - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111783978 chr1:111783982 synonymous SNV . 0 25 hm5C_associated_SNPs_124603 0 0 0 0 2 CHI3L2 chr1:111784065 5'GT 111784065 Upstream 84bp
chr11 67375885 67375885 1 + T C rs374675316 67375883 + 67375863 67375903 41 CTAGACAGCACCCAAGAAAACCTCATTTGGCTCGCTGAAGG CTAGACAGCACCCAAGAAAACCCCATTTGGCTCGCTGAAGG < 41bp 0.419248869169497 0.709998700981486 0.17526168 0.079646856 prediction 0.419997401962972 Functional Gain - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67375883 chr11:67375885 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_124605 0 0 1 0 2 NDUFV1 chr11:67375867 3'AG 67375867 Downstream 19bp
chr11 67375885 67375885 1 + T C rs374675316 67375883 + 67375863 67375903 41 CTAGACAGCACCCAAGAAAACCTCATTTGGCTCGCTGAAGG CTAGACAGCACCCAAGAAAACCCCATTTGGCTCGCTGAAGG < 41bp 0.419248869169497 0.709998700981486 0.17526168 0.079646856 prediction 0.419997401962972 Functional Gain - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67375883 chr11:67375885 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_124605 0 0 1 0 2 NDUFV1 chr11:67375949 5'GT 67375949 Upstream 65bp
chr20 44354312 44354312 1 + C A rs80206193 44354311 + 44354291 44354331 41 GAAGTTGTCTGCTGCACCATCCGAAATAAAGACACAAGAAA GAAGTTGTCTGCTGCACCATCAGAAATAAAGACACAAGAAA < 41bp 0.57685580478819 0.786852301909571 0.13980815 0.374835 prediction 0.419992994242762 Functional Gain - SPINT4 ENSG00000149651 UTR3 Human protein_coding chr20:44354311 chr20:44354312 . . 0 22 hm5C_associated_SNPs_124607 0 0 0 1 1 SPINT4 chr20:44354268 3'AG 44354268 Downstream 45bp
chr14 20925163 20925163 1 + T C LIHC 20925161 + 20925141 20925181 41 TTTCTATAGGCGATGAGGAGCATGATCAGGAAGGCCGGGTG TTTCTATAGGCGATGAGGAGCACGATCAGGAAGGCCGGGTG < 41bp 0.641246020127224 0.851240417565163 0.24672318 0.23769355 prediction 0.419988794875877 Functional Gain - APEX1 ENSG00000100823 CDS Human protein_coding chr14:20925161 chr14:20925163 synonymous SNV . 0 23 hm5C_associated_SNPs_124608 0 0 1 0 1 APEX1 chr14:20925150 3'AG 20925150 Downstream 14bp
chr11 63276290 63276290 1 + C T CESC 63276289 + 63276269 63276309 41 TGTGGCTGCAGCCTGTGTCCCCGGCCAGATATCGCCTTCCA TGTGGCTGCAGCCTGTGTCCCTGGCCAGATATCGCCTTCCA < 41bp 0.589789942170847 0.799784218193275 0.13334855 0.09766239 prediction 0.419988552044856 Functional Gain - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63276289 chr11:63276290 nonsynonymous SNV 0.264 1 22 hm5C_associated_SNPs_124609 0 0 0 0 3 LGALS12 chr11:63276247 3'AG 63276247 Downstream 44bp
chr11 63276290 63276290 1 + C T CESC 63276289 + 63276269 63276309 41 TGTGGCTGCAGCCTGTGTCCCCGGCCAGATATCGCCTTCCA TGTGGCTGCAGCCTGTGTCCCTGGCCAGATATCGCCTTCCA < 41bp 0.589789942170847 0.799784218193275 0.13334855 0.09766239 prediction 0.419988552044856 Functional Gain - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63276289 chr11:63276290 nonsynonymous SNV 0.264 1 22 hm5C_associated_SNPs_124609 0 0 0 0 3 LGALS12 chr11:63276250 3'AG 63276250 Downstream 41bp
chr11 63276290 63276290 1 + C T CESC 63276289 + 63276269 63276309 41 TGTGGCTGCAGCCTGTGTCCCCGGCCAGATATCGCCTTCCA TGTGGCTGCAGCCTGTGTCCCTGGCCAGATATCGCCTTCCA < 41bp 0.589789942170847 0.799784218193275 0.13334855 0.09766239 prediction 0.419988552044856 Functional Gain - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63276289 chr11:63276290 nonsynonymous SNV 0.264 1 22 hm5C_associated_SNPs_124609 0 0 0 0 3 LGALS12 chr11:63276257 3'AG 63276257 Downstream 34bp
chr2 231937111 231937111 1 + C T UCEC 231937110 + 231937090 231937130 41 CCACTAATACGGGTACTGTTCCGGGATCAGAGAAAGACAGG CCACTAATACGGGTACTGTTCTGGGATCAGAGAAAGACAGG < 41bp 0.595121652853321 0.805115460747032 0.89370006 0.7974948 prediction 0.419987615787423 Functional Gain - PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231937110 chr2:231937111 nonsynonymous SNV 0.984 2 22 hm5C_associated_SNPs_124610 0 0 1 0 1 PSMD1 chr2:231937129 5'GT 231937129 Upstream 19bp
chr9 116185749 116185749 1 + C T BRCA 116185748 + 116185728 116185768 41 CCTACCTCTCTGGGCTCAATCCGAAGCGTTACCTCAGGATC CCTACCTCTCTGGGCTCAATCTGAAGCGTTACCTCAGGATC < 41bp 0.610010111193852 0.820002638964546 0.8722686 0.32876062 prediction 0.41998505554139 Functional Gain - C9orf43 ENSG00000157653 CDS Human protein_coding chr9:116185748 chr9:116185749 synonymous SNV . 0 22 hm5C_associated_SNPs_124611 0 0 0 0 1 C9orf43 chr9:116185778 5'GT 116185778 Upstream 30bp
chr1 150933590 150933590 1 + C T STAD 150933589 + 150933569 150933609 41 GAGGGCCGGGCTGGGGGAAGCCGAATGGAGGCTGAGAAGGC GAGGGCCGGGCTGGGGGAAGCTGAATGGAGGCTGAGAAGGC < 41bp 0.610181991093367 0.820169353618216 0.72160053 0.8485927 prediction 0.419974725049697 Functional Gain - SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150933589 chr1:150933590 stopgain 0.865 0 22 hm5C_associated_SNPs_124613 0 0 1 0 1 SETDB1 chr1:150933667 5'GT 150933667 Upstream 78bp
chr9 130550650 130550650 1 + C T UCEC 130550649 + 130550629 130550669 41 TGACACTCTGGTACCGGCCCCCGGAGCTGTTGCTCGGTGAG TGACACTCTGGTACCGGCCCCTGGAGCTGTTGCTCGGTGAG < 41bp 0.604786000487898 0.814770265691968 0.83027387 0.5138045 prediction 0.41996853040814 Functional Gain - CDK9 ENSG00000136807 CDS Human protein_coding chr9:130550649 chr9:130550650 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_124614 0 0 1 0 1 CDK9 chr9:130550664 5'GT 130550664 Upstream 15bp
chr15 67358682 67358682 1 + T A HNSC 67358678 + 67358658 67358698 41 ACCACGCAGAACGTCAACACCAAGTGCATCACCATCCCCAG ACCACGCAGAACGTCAACACCAAGAGCATCACCATCCCCAG < 41bp 0.683412402722532 0.893396609641433 0.21794164 0.3038411 prediction 0.419968413837802 Functional Gain - SMAD3 ENSG00000166949 CDS Human protein_coding chr15:67358678 chr15:67358682 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_124615 0 0 0 0 1 SMAD3 chr15:67358698 5'GT 67358698 Upstream 17bp
chr5 89781468 89781468 1 + T C LUAD 89781466 + 89781446 89781486 41 TTAGCAAAGGTGAAAAGTTACCTGATGTAGTGTTGAAACCA TTAGCAAAGGTGAAAAGTTACCCGATGTAGTGTTGAAACCA < 41bp 0.421732620723669 0.709983213175962 0.35168463 0.29201597 prediction 0.419966426351923 Functional Gain - POLR3G ENSG00000113356 CDS Human protein_coding chr5:89781466 chr5:89781468 synonymous SNV . 0 23 hm5C_associated_SNPs_124617 0 0 0 0 1 POLR3G chr5:89781501 5'GT 89781501 Upstream 34bp
chr4 3449225 3449225 1 + C T SKCM 3449224 + 3449204 3449244 41 GCCCCCCTTGCACAGCCCCCCCAGGGACAGCGTCTCCGTGG GCCCCCCTTGCACAGCCCCCCTAGGGACAGCGTCTCCGTGG < 41bp 0.574292732862371 0.784271047663115 0.181813 0.087064624 prediction 0.41995662960149 Functional Gain - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3449224 chr4:3449225 synonymous SNV . 0 22 hm5C_associated_SNPs_124619 0 0 1 0 1 HGFAC chr4:3449219 3'AG 3449219 Downstream 7bp
chr10 81371362 81371362 1 + C G rs532407917 81371358 + 81371338 81371378 41 CCTGGAGACCCCACAACCTCCAGCCGGAGGCCTGAAGCATG CCTGGAGACCCCACAACCTCCAGCGGGAGGCCTGAAGCATG < 41bp 0.491015423649182 0.709977463521654 0.2418001 0.30181152 prediction 0.419954927043309 Functional Gain - SFTPA1 ENSG00000122852 UTR5 Human protein_coding chr10:81371358 chr10:81371362 . . 0 25 hm5C_associated_SNPs_124620 0 0 0 0 4 SFTPA1 chr10:81371335 3'AG 81371335 Downstream 28bp
chr10 81371362 81371362 1 + C G rs532407917 81371358 + 81371338 81371378 41 CCTGGAGACCCCACAACCTCCAGCCGGAGGCCTGAAGCATG CCTGGAGACCCCACAACCTCCAGCGGGAGGCCTGAAGCATG < 41bp 0.491015423649182 0.709977463521654 0.2418001 0.30181152 prediction 0.419954927043309 Functional Gain - SFTPA1 ENSG00000122852 UTR5 Human protein_coding chr10:81371358 chr10:81371362 . . 0 25 hm5C_associated_SNPs_124620 0 0 0 0 4 SFTPA1 chr10:81371338 3'AG 81371338 Downstream 25bp
chr10 81371362 81371362 1 + C G rs532407917 81371358 + 81371338 81371378 41 CCTGGAGACCCCACAACCTCCAGCCGGAGGCCTGAAGCATG CCTGGAGACCCCACAACCTCCAGCGGGAGGCCTGAAGCATG < 41bp 0.491015423649182 0.709977463521654 0.2418001 0.30181152 prediction 0.419954927043309 Functional Gain - SFTPA1 ENSG00000122852 UTR5 Human protein_coding chr10:81371358 chr10:81371362 . . 0 25 hm5C_associated_SNPs_124620 0 0 0 0 4 SFTPA1 chr10:81371390 5'GT 81371390 Upstream 29bp
chr10 81371362 81371362 1 + C G rs532407917 81371358 + 81371338 81371378 41 CCTGGAGACCCCACAACCTCCAGCCGGAGGCCTGAAGCATG CCTGGAGACCCCACAACCTCCAGCGGGAGGCCTGAAGCATG < 41bp 0.491015423649182 0.709977463521654 0.2418001 0.30181152 prediction 0.419954927043309 Functional Gain - SFTPA1 ENSG00000122852 UTR5 Human protein_coding chr10:81371358 chr10:81371362 . . 0 25 hm5C_associated_SNPs_124620 0 0 0 0 4 SFTPA1 chr10:81371397 5'GT 81371397 Upstream 36bp
chr1 17698843 17698843 1 + T A LUSC 17698839 + 17698819 17698859 41 TGTGTGTTGGGCACAGAAATCTGCTTGGATCTCAGCGGGTG TGTGTGTTGGGCACAGAAATCTGCATGGATCTCAGCGGGTG < 41bp 0.663658926689846 0.873630410532162 0.20514685 0.38515493 prediction 0.419942967684632 Functional Gain - PADI6 ENSG00000256049 ncRNA_exonic Human other chr1:17698839 chr1:17698843 . 0.043 1 25 hm5C_associated_SNPs_124622 0 0 0 0 1 PADI6 chr1:17698856 5'GT 17698856 Upstream 14bp
chr15 45433174 45433174 1 + C G rs193117843 45433173 + 45433153 45433193 41 GGGGGACTCCTGGAGAGCCACCGGGACCCTGGACCTCTGTT GGGGGACTCCTGGAGAGCCACGGGGACCCTGGACCTCTGTT < 41bp 0.382876296457666 0.709970903461626 0.69457245 0.9180037 prediction 0.419941806923253 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45433173 chr15:45433174 nonsynonymous SNV 0.980 0 22 hm5C_associated_SNPs_124624 0 0 0 0 2 DUOX1 chr15:45433093 3'AG 45433093 Downstream 82bp
chr15 45433174 45433174 1 + C G rs193117843 45433173 + 45433153 45433193 41 GGGGGACTCCTGGAGAGCCACCGGGACCCTGGACCTCTGTT GGGGGACTCCTGGAGAGCCACGGGGACCCTGGACCTCTGTT < 41bp 0.382876296457666 0.709970903461626 0.69457245 0.9180037 prediction 0.419941806923253 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45433173 chr15:45433174 nonsynonymous SNV 0.980 0 22 hm5C_associated_SNPs_124624 0 0 0 0 2 DUOX1 chr15:45433268 5'GT 45433268 Upstream 95bp
chr2 96072702 96072702 1 + C T SKCM 96072701 + 96072681 96072721 41 CTCTACAGAGCCCTGGCTGCCCAGTTGCCAGTCCTACCACG CTCTACAGAGCCCTGGCTGCCTAGTTGCCAGTCCTACCACG < 41bp 0.469601647467129 0.709968912305745 0.41024187 0.40330103 prediction 0.419937824611489 Functional Gain - FAHD2A ENSG00000115042 CDS Human protein_coding chr2:96072701 chr2:96072702 stopgain 0.982 0 22 hm5C_associated_SNPs_124628 0 0 1 0 1 FAHD2A chr2:96072689 3'AG 96072689 Downstream 14bp
chrX 153608120 153608120 1 + C A rs782051850 153608119 + 153608099 153608139 41 GAGGCGGCGGCTCTCGCCCCCCAGCTCGTCCGCCGCCTCCT GAGGCGGCGGCTCTCGCCCCCAAGCTCGTCCGCCGCCTCCT < 41bp 0.441716869926239 0.709962292365329 0.054510653 0.79268056 prediction 0.419924584730657 Functional Gain - EMD ENSG00000102119 CDS Human protein_coding chrX:153608119 chrX:153608120 synonymous SNV . 0 22 hm5C_associated_SNPs_124629 0 0 1 0 2 EMD chrX:153608050 3'AG 153608050 Downstream 71bp
chrX 153608120 153608120 1 + C A rs782051850 153608119 + 153608099 153608139 41 GAGGCGGCGGCTCTCGCCCCCCAGCTCGTCCGCCGCCTCCT GAGGCGGCGGCTCTCGCCCCCAAGCTCGTCCGCCGCCTCCT < 41bp 0.441716869926239 0.709962292365329 0.054510653 0.79268056 prediction 0.419924584730657 Functional Gain - EMD ENSG00000102119 CDS Human protein_coding chrX:153608119 chrX:153608120 synonymous SNV . 0 22 hm5C_associated_SNPs_124629 0 0 1 0 2 EMD chrX:153608154 5'GT 153608154 Upstream 35bp
chr1 16095092 16095092 1 + C T SKCM 16095091 + 16095071 16095111 41 GAGGAAGAGCTGCCACCTCCCCCGGCAGAACCTGTTGAGAA GAGGAAGAGCTGCCACCTCCCTCGGCAGAACCTGTTGAGAA < 41bp 0.623281530553443 0.833241538898121 0.064371616 0.012141317 prediction 0.419920016689357 Functional Gain - FBLIM1 ENSG00000162458 CDS Human protein_coding chr1:16095091 chr1:16095092 nonsynonymous SNV 0.026 2 22 hm5C_associated_SNPs_124631 0 0 1 0 2 FBLIM1 chr1:16095023 3'AG 16095023 Downstream 70bp
chr1 16095092 16095092 1 + C T SKCM 16095091 + 16095071 16095111 41 GAGGAAGAGCTGCCACCTCCCCCGGCAGAACCTGTTGAGAA GAGGAAGAGCTGCCACCTCCCTCGGCAGAACCTGTTGAGAA < 41bp 0.623281530553443 0.833241538898121 0.064371616 0.012141317 prediction 0.419920016689357 Functional Gain - FBLIM1 ENSG00000162458 CDS Human protein_coding chr1:16095091 chr1:16095092 nonsynonymous SNV 0.026 2 22 hm5C_associated_SNPs_124631 0 0 1 0 2 FBLIM1 chr1:16095125 5'GT 16095125 Upstream 34bp
chr3 51733574 51733574 1 + C A UCEC 51733573 + 51733553 51733593 41 GCTTGTGGAGGCCATTGACACCCAGGTGGATGGCACAGGTA GCTTGTGGAGGCCATTGACACACAGGTGGATGGCACAGGTA < 41bp 0.620316982474991 0.830262499556574 0.03365782 0.16052279 prediction 0.419891034163166 Functional Gain - TEX264 ENSG00000164081 CDS Human protein_coding chr3:51733573 chr3:51733574 synonymous SNV . 0 22 hm5C_associated_SNPs_124636 0 0 1 0 1 TEX264 chr3:51733590 5'GT 51733590 Upstream 17bp
chr1 15978331 15978331 1 + C T rs150526409 15978330 + 15978310 15978350 41 CTGGAAGAGAGGATGTACGGCCAGAGGAGATTGCAGACCAA CTGGAAGAGAGGATGTACGGCTAGAGGAGATTGCAGACCAA < 41bp 0.624898070017875 0.834842296744797 0.5888119 0.39800805 prediction 0.419888453453844 Functional Gain - DDI2 ENSG00000197312 CDS Human protein_coding chr1:15978330 chr1:15978331 nonsynonymous SNV 0.990 0 22 hm5C_associated_SNPs_124638 0 0 1 0 1 DDI2 chr1:15978390 5'GT 15978390 Upstream 60bp
chr14 103574851 103574851 1 + T G UCEC 103574849 + 103574829 103574869 41 CTTATCCGGAGCTACCCCGACATCAGGTGTGTACCCCACCT CTTATCCGGAGCTACCCCGACAGCAGGTGTGTACCCCACCT < 41bp 0.369265606771172 0.709943062899885 0.46314088 0.8040502 prediction 0.419886125799769 Functional Gain - EXOC3L4 ENSG00000205436 CDS Human protein_coding chr14:103574849 chr14:103574851 nonsynonymous SNV 0.675 2 23 hm5C_associated_SNPs_124639 0 0 1 0 1 EXOC3L4 chr14:103574854 5'GT 103574854 Upstream 4bp
chr9 131843440 131843440 1 + C T SKCM 131843439 + 131843419 131843459 41 GGACGGACAGTGCTCGCTCCCCGCTTCATGGCGGCCGGTGA GGACGGACAGTGCTCGCTCCCTGCTTCATGGCGGCCGGTGA < 41bp 0.572562376074103 0.782503523650416 0.16160893 0.088190675 prediction 0.419882295152625 Functional Gain - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131843439 chr9:131843440 synonymous SNV . 0 22 hm5C_associated_SNPs_124642 0 0 1 0 1 DOLPP1 chr9:131843486 5'GT 131843486 Upstream 47bp
chr16 231021 231021 1 + C G rs144961211 231020 + 231000 231040 41 GTAACCCTCGCCCGGCACTACCCCGGAGACTTCAGCCCCGC GTAACCCTCGCCCGGCACTACGCCGGAGACTTCAGCCCCGC < 41bp 0.677843261044763 0.887783879950538 0.38595563 0.5894941 prediction 0.41988123781155 Functional Gain - HBQ1 ENSG00000086506 CDS Human protein_coding chr16:231020 chr16:231021 nonsynonymous SNV 0.114 3 22 hm5C_associated_SNPs_124643 0 0 1 0 1 HBQ1 chr16:230979 3'AG 230979 Downstream 43bp
chr17 6930143 6930143 1 + C A LUSC 6930139 + 6930119 6930159 41 TATAAGTGTGAGACGTGCGGCTCGCGCTTTGTACAGGTACG TATAAGTGTGAGACGTGCGGCTCGAGCTTTGTACAGGTACG < 41bp 0.28313419742485 0.709933900076744 0.013103306 0.047296196 prediction 0.419867800153489 Functional Gain - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6930139 chr17:6930143 nonsynonymous SNV 0.950 4 25 hm5C_associated_SNPs_124645 0 0 0 0 1 BCL6B chr17:6930154 5'GT 6930154 Upstream 12bp
chrX 149814175 149814175 1 + C T BRCA 149814174 + 149814154 149814194 41 AGGTGCTGTCATGGATTCATCCAGAAAATAAGACGGTCATT AGGTGCTGTCATGGATTCATCTAGAAAATAAGACGGTCATT < 41bp 0.602033418505951 0.811958323696216 0.25788486 0.19502664 prediction 0.41984981038053 Functional Gain - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149814174 chrX:149814175 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_124649 0 0 0 0 1 MTM1 chrX:149814156 3'AG 149814156 Downstream 20bp
chr19 58038908 58038908 1 + C G rs111934070 58038907 + 58038887 58038927 41 CCGGATCCCGGGCTTTACCGCCCGCCTTTCCAGGCCCCGCC CCGGATCCCGGGCTTTACCGCGCGCCTTTCCAGGCCCCGCC < 41bp 0.57932979698875 0.789254285905235 0.2513174 0.7613472 prediction 0.41984897783297 Functional Gain - ZNF549 ENSG00000121406 UTR5 Human protein_coding chr19:58038907 chr19:58038908 . . 0 22 hm5C_associated_SNPs_124650 0 0 1 0 1 ZNF549 chr19:58038974 5'GT 58038974 Upstream 67bp
chr3 148714585 148714585 1 + C A SKCM 148714581 + 148714561 148714601 41 AGAAGAATTGTCAGCAGCACCAGACCCAGGGTGGCCTGACT AGAAGAATTGTCAGCAGCACCAGAACCAGGGTGGCCTGACT < 41bp 0.28809520797734 0.709922820998288 0.2762354 0.35462737 prediction 0.419845641996575 Functional Gain - GYG1 ENSG00000163754 CDS Human protein_coding chr3:148714581 chr3:148714585 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_124651 0 0 0 0 2 GYG1 chr3:148714529 3'AG 148714529 Downstream 57bp
chr3 148714585 148714585 1 + C A SKCM 148714581 + 148714561 148714601 41 AGAAGAATTGTCAGCAGCACCAGACCCAGGGTGGCCTGACT AGAAGAATTGTCAGCAGCACCAGAACCAGGGTGGCCTGACT < 41bp 0.28809520797734 0.709922820998288 0.2762354 0.35462737 prediction 0.419845641996575 Functional Gain - GYG1 ENSG00000163754 CDS Human protein_coding chr3:148714581 chr3:148714585 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_124651 0 0 0 0 2 GYG1 chr3:148714679 5'GT 148714679 Upstream 95bp
chr19 5724856 5724856 1 + A G LUSC 5724853 + 5724833 5724873 41 GGACAGGAAAAGTGTTTAATCTGATACAGGACGTTCAAGGG GGACAGGAAAAGTGTTTAATCTGGTACAGGACGTTCAAGGG < 41bp 0.463679481616335 0.709910704436007 0.1503107 0.2482304 prediction 0.419821408872014 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5724853 chr19:5724856 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_124655 0 0 0 0 2 CATSPERD chr19:5724819 3'AG 5724819 Downstream 38bp
chr19 5724856 5724856 1 + A G LUSC 5724853 + 5724833 5724873 41 GGACAGGAAAAGTGTTTAATCTGATACAGGACGTTCAAGGG GGACAGGAAAAGTGTTTAATCTGGTACAGGACGTTCAAGGG < 41bp 0.463679481616335 0.709910704436007 0.1503107 0.2482304 prediction 0.419821408872014 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5724853 chr19:5724856 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_124655 0 0 0 0 2 CATSPERD chr19:5724873 5'GT 5724873 Upstream 18bp
chr11 86749176 86749176 1 + T A UCEC 86749172 + 86749152 86749192 41 CCTGCCGGGTCTCCTTCCTGCAGATCACCGGGGGCGCCCTG CCTGCCGGGTCTCCTTCCTGCAGAACACCGGGGGCGCCCTG < 41bp 0.400941839723491 0.709903811099715 0.086408705 0.1838524 prediction 0.41980762219943 Functional Gain - TMEM135 ENSG00000166575 CDS Human protein_coding chr11:86749172 chr11:86749176 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_124660 0 0 1 0 1 TMEM135 chr11:86749228 5'GT 86749228 Upstream 53bp
chr18 72229332 72229332 1 + T C STAD 72229330 + 72229310 72229350 41 CAACAAAGGCCCTGTCTTGGCTTGGATCAATGCTGTGAGCG CAACAAAGGCCCTGTCTTGGCTCGGATCAATGCTGTGAGCG < 41bp 0.651659444337211 0.861557487689459 0.13569126 0.20601103 prediction 0.419796086704497 Functional Gain - CNDP1 ENSG00000150656 CDS Human protein_coding chr18:72229330 chr18:72229332 nonsynonymous SNV 0.871 4 23 hm5C_associated_SNPs_124662 0 0 0 0 2 CNDP1 chr18:72229282 3'AG 72229282 Downstream 51bp
chr18 72229332 72229332 1 + T C STAD 72229330 + 72229310 72229350 41 CAACAAAGGCCCTGTCTTGGCTTGGATCAATGCTGTGAGCG CAACAAAGGCCCTGTCTTGGCTCGGATCAATGCTGTGAGCG < 41bp 0.651659444337211 0.861557487689459 0.13569126 0.20601103 prediction 0.419796086704497 Functional Gain - CNDP1 ENSG00000150656 CDS Human protein_coding chr18:72229330 chr18:72229332 nonsynonymous SNV 0.871 4 23 hm5C_associated_SNPs_124662 0 0 0 0 2 CNDP1 chr18:72229370 5'GT 72229370 Upstream 39bp
chr21 44182260 44182260 1 + C T UCEC 44182259 + 44182239 44182279 41 ATCTCACCGCTGGAGAACCACCACTGCGCCGTGGCCTTCCA ATCTCACCGCTGGAGAACCACTACTGCGCCGTGGCCTTCCA < 41bp 0.463855168970317 0.709887700876546 0.28779167 0.5138421 prediction 0.419775401753092 Functional Gain - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44182259 chr21:44182260 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_124664 0 0 0 0 2 PDE9A chr21:44182193 3'AG 44182193 Downstream 68bp
chr21 44182260 44182260 1 + C T UCEC 44182259 + 44182239 44182279 41 ATCTCACCGCTGGAGAACCACCACTGCGCCGTGGCCTTCCA ATCTCACCGCTGGAGAACCACTACTGCGCCGTGGCCTTCCA < 41bp 0.463855168970317 0.709887700876546 0.28779167 0.5138421 prediction 0.419775401753092 Functional Gain - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44182259 chr21:44182260 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_124664 0 0 0 0 2 PDE9A chr21:44182349 5'GT 44182349 Upstream 90bp
chr7 116409837 116409837 1 + A G OV 116409834 + 116409814 116409854 41 TGCTGAAATTGAACAGCGAGCTAAATATAGAGGTGGGATTC TGCTGAAATTGAACAGCGAGCTAGATATAGAGGTGGGATTC < 41bp 0.513936640937312 0.723821664192156 0.06563988 0.14558119 prediction 0.419770046509689 Functional Gain - MET ENSG00000105976 CDS Human protein_coding chr7:116409834 chr7:116409837 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_124665 0 0 1 0 1 MET chr7:116409845 5'GT 116409845 Upstream 9bp
chr2 25344587 25344587 1 + C T ESCA 25344586 + 25344566 25344606 41 GAGGACACCCCGTCCTATCACCGGAGCTATGACTTCTTTGT GAGGACACCCCGTCCTATCACTGGAGCTATGACTTCTTTGT < 41bp 0.450358709818928 0.70988415842069 0.9204854 0.28330672 prediction 0.419768316841379 Functional Gain - EFR3B ENSG00000084710 CDS Human protein_coding chr2:25344586 chr2:25344587 nonsynonymous SNV 0.895 4 22 hm5C_associated_SNPs_124667 0 0 0 0 2 EFR3B chr2:25344542 3'AG 25344542 Downstream 46bp
chr2 25344587 25344587 1 + C T ESCA 25344586 + 25344566 25344606 41 GAGGACACCCCGTCCTATCACCGGAGCTATGACTTCTTTGT GAGGACACCCCGTCCTATCACTGGAGCTATGACTTCTTTGT < 41bp 0.450358709818928 0.70988415842069 0.9204854 0.28330672 prediction 0.419768316841379 Functional Gain - EFR3B ENSG00000084710 CDS Human protein_coding chr2:25344586 chr2:25344587 nonsynonymous SNV 0.895 4 22 hm5C_associated_SNPs_124667 0 0 0 0 2 EFR3B chr2:25344663 5'GT 25344663 Upstream 77bp
chr16 28509637 28509637 1 + C G KIRP 28509636 + 28509616 28509656 41 CTCTGAGGCATGATGGGACCCCGGTGCCAGCCAGGAGAAGG CTCTGAGGCATGATGGGACCCGGGTGCCAGCCAGGAGAAGG < 41bp 0.387550792057298 0.709883644887353 0.29448873 0.81049246 prediction 0.419767289774706 Functional Gain - APOBR ENSG00000184730 CDS Human protein_coding chr16:28509636 chr16:28509637 nonsynonymous SNV 0.556 3 22 hm5C_associated_SNPs_124668 0 0 0 0 1 APOBR chr16:28509670 5'GT 28509670 Upstream 34bp
chr3 41266971 41266971 1 + C G rs3856747 41266970 + 41266950 41266990 41 TGTAGAAACAGCTCGTTGTACCGCTGGGACCTTGCATAACC TGTAGAAACAGCTCGTTGTACGGCTGGGACCTTGCATAACC < 41bp 0.392593074604576 0.709882440677431 0.025603116 0.06597012 prediction 0.419764881354862 Functional Gain - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41266970 chr3:41266971 synonymous SNV . 0 22 hm5C_associated_SNPs_124670 1 0 1 0 1 CTNNB1 chr3:41267063 5'GT 41267063 Upstream 93bp
chrX 2773101 2773101 1 + C T BRCA 2773100 + 2773080 2773120 41 CGGCCCCGGACCCCGGATGGCCGGATTGCTTCAATAGCGGG CGGCCCCGGACCCCGGATGGCTGGATTGCTTCAATAGCGGG < 41bp 0.621281738072823 0.831158104645635 0.34517875 0.32661182 prediction 0.419752733145624 Functional Gain - GYG2 ENSG00000056998 CDS Human protein_coding chrX:2773100 chrX:2773101 nonsynonymous SNV 0.062 4 22 hm5C_associated_SNPs_124673 0 0 0 0 1 GYG2 chrX:2773196 5'GT 2773196 Upstream 96bp
chr6 41204270 41204270 1 + C T SKCM 41204269 + 41204249 41204289 41 GGCTCAGGTGGCCCCAGATTCCTGGTCTTGGTGCTATGTGG GGCTCAGGTGGCCCCAGATTCTTGGTCTTGGTGCTATGTGG < 41bp 0.474788713742242 0.70987595751089 0.24187288 0.21476611 prediction 0.41975191502178 Functional Gain - TREML4 ENSG00000188056 CDS Human protein_coding chr6:41204269 chr6:41204270 synonymous SNV . 0 22 hm5C_associated_SNPs_124674 0 0 0 0 2 TREML4 chr6:41204224 3'AG 41204224 Downstream 47bp
chr6 41204270 41204270 1 + C T SKCM 41204269 + 41204249 41204289 41 GGCTCAGGTGGCCCCAGATTCCTGGTCTTGGTGCTATGTGG GGCTCAGGTGGCCCCAGATTCTTGGTCTTGGTGCTATGTGG < 41bp 0.474788713742242 0.70987595751089 0.24187288 0.21476611 prediction 0.41975191502178 Functional Gain - TREML4 ENSG00000188056 CDS Human protein_coding chr6:41204269 chr6:41204270 synonymous SNV . 0 22 hm5C_associated_SNPs_124674 0 0 0 0 2 TREML4 chr6:41204355 5'GT 41204355 Upstream 86bp
chr7 65225426 65225426 1 + T G rs111970336 65225423 + 65225403 65225443 41 TCCAACAGGCTGTGTGGTTCCGGTGCTGGTGCCGTGGAAGT TCCAACAGGCTGTGTGGTTCCGGGGCTGGTGCCGTGGAAGT < 41bp 0.718316167746934 0.928189121068445 0.24179152 0.8522067 prediction 0.419745906643021 Functional Gain - CCT6P1 ENSG00000228409 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:65225423 chr7:65225426 . . 0 24 hm5C_associated_SNPs_124675 0 0 1 0 1 CCT6P1 chr7:65225411 3'AG 65225411 Downstream 16bp
chr1 44364853 44364853 1 + C T LGG 44364852 + 44364832 44364872 41 CCCCTCAGCCTCCGCTGCCGCCGCTGCATCATCGTGGGCAA CCCCTCAGCCTCCGCTGCCGCTGCTGCATCATCGTGGGCAA < 41bp 0.538206844682584 0.748078336037807 0.068279564 0.077764004 prediction 0.419742982710446 Functional Gain - ST3GAL3 ENSG00000126091 CDS Human protein_coding chr1:44364852 chr1:44364853 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_124676 0 0 1 0 2 ST3GAL3 chr1:44364840 3'AG 44364840 Downstream 14bp
chr1 44364853 44364853 1 + C T LGG 44364852 + 44364832 44364872 41 CCCCTCAGCCTCCGCTGCCGCCGCTGCATCATCGTGGGCAA CCCCTCAGCCTCCGCTGCCGCTGCTGCATCATCGTGGGCAA < 41bp 0.538206844682584 0.748078336037807 0.068279564 0.077764004 prediction 0.419742982710446 Functional Gain - ST3GAL3 ENSG00000126091 CDS Human protein_coding chr1:44364852 chr1:44364853 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_124676 0 0 1 0 2 ST3GAL3 chr1:44364935 5'GT 44364935 Upstream 83bp
chr10 45652248 45652248 1 + T A LUAD 45652244 + 45652224 45652264 41 AGAAGGAACATCTGAAGGAACACCTGATGAGGCTGCACCCT AGAAGGAACATCTGAAGGAACACCAGATGAGGCTGCACCCT < 41bp 0.406385639426258 0.709869406801838 0.113889515 0.2878431 prediction 0.419738813603676 Functional Gain - ANKRD30BP3 ENSG00000230501;ENSG00000243349 ncRNA_exonic Human other chr10:45652244 chr10:45652248 . . 0 25 hm5C_associated_SNPs_124677 0 0 0 0 1 ANKRD30BP3 chr10:45652226 3'AG 45652226 Downstream 23bp
chr2 10263175 10263175 1 + C A STAD 10263174 + 10263154 10263194 41 GAGGAGGATCTTCCAGGAGCCCACGGAGCCGGTGAGTGGCG GAGGAGGATCTTCCAGGAGCCAACGGAGCCGGTGAGTGGCG < 41bp 0.613721668576794 0.823589241380192 0.37867793 0.78297156 prediction 0.419735145606795 Functional Gain - RRM2 ENSG00000171848 CDS Human protein_coding chr2:10263174 chr2:10263175 synonymous SNV . 0 22 hm5C_associated_SNPs_124678 0 0 1 0 2 RRM2 chr2:10263110 3'AG 10263110 Downstream 66bp
chr2 10263175 10263175 1 + C A STAD 10263174 + 10263154 10263194 41 GAGGAGGATCTTCCAGGAGCCCACGGAGCCGGTGAGTGGCG GAGGAGGATCTTCCAGGAGCCAACGGAGCCGGTGAGTGGCG < 41bp 0.613721668576794 0.823589241380192 0.37867793 0.78297156 prediction 0.419735145606795 Functional Gain - RRM2 ENSG00000171848 CDS Human protein_coding chr2:10263174 chr2:10263175 synonymous SNV . 0 22 hm5C_associated_SNPs_124678 0 0 1 0 2 RRM2 chr2:10263184 5'GT 10263184 Upstream 10bp
chr22 18022598 18022598 1 + A G LAML 18022595 + 18022575 18022615 41 CCTTTTCCGCAGGTAGCTCACCCAATGTCAGTCACTGTGTC CCTTTTCCGCAGGTAGCTCACCCGATGTCAGTCACTGTGTC < 41bp 0.455990631333317 0.709863744971064 0.23897102 0.25073987 prediction 0.419727489942127 Functional Gain - CECR2 ENSG00000099954 CDS Human protein_coding chr22:18022595 chr22:18022598 synonymous SNV . 0 24 hm5C_associated_SNPs_124680 0 0 0 0 1 CECR2 chr22:18022692 5'GT 18022692 Upstream 95bp
chr1 46033677 46033677 1 + A G LIHC 46033674 + 46033654 46033694 41 GCGGGGAGACAACCCCTTCCCCAAGAATGCTGATGGGACTA GCGGGGAGACAACCCCTTCCCCAGGAATGCTGATGGGACTA < 41bp 0.462851551910204 0.709855260803451 0.048781246 0.21750978 prediction 0.419710521606902 Functional Gain - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46033674 chr1:46033677 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_124683 0 0 1 0 1 AKR1A1 chr1:46033654 3'AG 46033654 Downstream 24bp
chr19 48918144 48918144 1 + C T STAD 48918143 + 48918123 48918163 41 CTCCACCGGATGCCCCCCGCCCGGAAAAGCGCTGCTGCAAG CTCCACCGGATGCCCCCCGCCTGGAAAAGCGCTGCTGCAAG < 41bp 0.613357644974821 0.823210872299356 0.83585835 0.8134383 prediction 0.419706454649071 Functional Gain - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48918143 chr19:48918144 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_124685 0 0 1 0 1 GRIN2D chr19:48918121 3'AG 48918121 Downstream 24bp
chr1 156562199 156562199 1 + C T UCEC 156562198 + 156562178 156562218 41 TCCAGGAGCCCCCCTACTGTCCTGGTCATCTGTGGCCCGGG TCCAGGAGCCCCCCTACTGTCTTGGTCATCTGTGGCCCGGG < 41bp 0.461991163994611 0.709850839392156 0.1306405 0.12991464 prediction 0.419701678784312 Functional Gain - NAXE ENSG00000163382 CDS Human protein_coding chr1:156562198 chr1:156562199 synonymous SNV . 0 22 hm5C_associated_SNPs_124687 0 0 1 0 2 NAXE chr1:156562157 3'AG 156562157 Downstream 43bp
chr1 156562199 156562199 1 + C T UCEC 156562198 + 156562178 156562218 41 TCCAGGAGCCCCCCTACTGTCCTGGTCATCTGTGGCCCGGG TCCAGGAGCCCCCCTACTGTCTTGGTCATCTGTGGCCCGGG < 41bp 0.461991163994611 0.709850839392156 0.1306405 0.12991464 prediction 0.419701678784312 Functional Gain - NAXE ENSG00000163382 CDS Human protein_coding chr1:156562198 chr1:156562199 synonymous SNV . 0 22 hm5C_associated_SNPs_124687 0 0 1 0 2 NAXE chr1:156562267 5'GT 156562267 Upstream 69bp
chr21 43524112 43524112 1 - G A SKCM 43524113 - 43524093 43524133 41 GGGGGCCAGCGTGGAGATGCCCATGGGAAACCCGGGGTCCT GGGGGCCAGCGTGGAGATGCCTATGGGAAACCCGGGGTCCT < 41bp 0.563742798708373 0.773589433347526 0.76554096 0.5671165 prediction 0.419693269278305 Functional Gain - UMODL1 ENSG00000177398;ENSG00000184385 CDS Human other chr21:43524113 chr21:43524112 nonsynonymous SNV 0.007 0 22 hm5C_associated_SNPs_124688 0 0 0 0 1 UMODL1 chr21:43524145 3'AG 43524145 Downstream 34bp
chr2 241534088 241534088 1 + C T rs140681762 241534087 + 241534067 241534107 41 ACGAGCTCACCGTTGGCTACCCGGTCACGGAGGCCGGCCAC ACGAGCTCACCGTTGGCTACCTGGTCACGGAGGCCGGCCAC < 41bp 0.569699035864991 0.77953978714891 0.15902707 0.0848605 prediction 0.419681502567838 Functional Gain - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241534087 chr2:241534088 nonsynonymous SNV 0.006 3 22 hm5C_associated_SNPs_124689 0 0 1 0 1 CAPN10 chr2:241534126 5'GT 241534126 Upstream 39bp
chr12 107090222 107090222 1 + C A LUSC 107090218 + 107090198 107090238 41 CACTGTGCTGCAGGCATTACCTGACAGGTGGGCATGCTTAT CACTGTGCTGCAGGCATTACCTGAAAGGTGGGCATGCTTAT < 41bp 0.288816896545532 0.709839759590369 0.08096272 0.125866 prediction 0.419679519180737 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107090218 chr12:107090222 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_124690 0 0 0 0 1 RFX4 chr12:107090224 5'GT 107090224 Upstream 3bp
chr15 48058163 48058163 1 + C T COAD 48058162 + 48058142 48058182 41 GCGTTCTCTAGCTGCATTATCCGCATCCCCCTCAGTCGCTG GCGTTCTCTAGCTGCATTATCTGCATCCCCCTCAGTCGCTG < 41bp 0.616740048275808 0.826559451077118 0.15189531 0.13257897 prediction 0.41963880560262 Functional Gain - SEMA6D ENSG00000137872 CDS Human protein_coding chr15:48058162 chr15:48058163 nonsynonymous SNV 0.975 4 22 hm5C_associated_SNPs_124700 0 0 0 0 2 SEMA6D chr15:48058066 3'AG 48058066 Downstream 98bp
chr15 48058163 48058163 1 + C T COAD 48058162 + 48058142 48058182 41 GCGTTCTCTAGCTGCATTATCCGCATCCCCCTCAGTCGCTG GCGTTCTCTAGCTGCATTATCTGCATCCCCCTCAGTCGCTG < 41bp 0.616740048275808 0.826559451077118 0.15189531 0.13257897 prediction 0.41963880560262 Functional Gain - SEMA6D ENSG00000137872 CDS Human protein_coding chr15:48058162 chr15:48058163 nonsynonymous SNV 0.975 4 22 hm5C_associated_SNPs_124700 0 0 0 0 2 SEMA6D chr15:48058206 5'GT 48058206 Upstream 44bp
chr16 332518 332518 1 + C A LUAD 332517 + 332497 332537 41 TGTCTGCACCACACCTACCGCCGGGGCCTGCGCGGTGAGGG TGTCTGCACCACACCTACCGCAGGGGCCTGCGCGGTGAGGG < 41bp 0.602788267645628 0.812605411799262 0.8170018 0.87760854 prediction 0.419634288307267 Functional Gain - ARHGDIG ENSG00000242173 CDS Human protein_coding chr16:332517 chr16:332518 synonymous SNV . 0 22 hm5C_associated_SNPs_124702 0 0 0 0 2 ARHGDIG chr16:332467 3'AG 332467 Downstream 52bp
chr16 332518 332518 1 + C A LUAD 332517 + 332497 332537 41 TGTCTGCACCACACCTACCGCCGGGGCCTGCGCGGTGAGGG TGTCTGCACCACACCTACCGCAGGGGCCTGCGCGGTGAGGG < 41bp 0.602788267645628 0.812605411799262 0.8170018 0.87760854 prediction 0.419634288307267 Functional Gain - ARHGDIG ENSG00000242173 CDS Human protein_coding chr16:332517 chr16:332518 synonymous SNV . 0 22 hm5C_associated_SNPs_124702 0 0 0 0 2 ARHGDIG chr16:332530 5'GT 332530 Upstream 13bp
chr19 50172192 50172192 1 + C T SKCM 50172191 + 50172171 50172211 41 AGCTGAAATCTCCGCCCAGCCCAGGTGAGGCACAGAGGAGC AGCTGAAATCTCCGCCCAGCCTAGGTGAGGCACAGAGGAGC < 41bp 0.580817445853915 0.79062628181156 0.8292006 0.24651456 prediction 0.419617671915291 Functional Gain - BCL2L12 ENSG00000126453 CDS Human protein_coding chr19:50172191 chr19:50172192 nonsynonymous SNV 0.879 2 22 hm5C_associated_SNPs_124706 0 0 1 0 2 BCL2L12 chr19:50172108 3'AG 50172108 Downstream 85bp
chr19 50172192 50172192 1 + C T SKCM 50172191 + 50172171 50172211 41 AGCTGAAATCTCCGCCCAGCCCAGGTGAGGCACAGAGGAGC AGCTGAAATCTCCGCCCAGCCTAGGTGAGGCACAGAGGAGC < 41bp 0.580817445853915 0.79062628181156 0.8292006 0.24651456 prediction 0.419617671915291 Functional Gain - BCL2L12 ENSG00000126453 CDS Human protein_coding chr19:50172191 chr19:50172192 nonsynonymous SNV 0.879 2 22 hm5C_associated_SNPs_124706 0 0 1 0 2 BCL2L12 chr19:50172194 5'GT 50172194 Upstream 3bp
chr19 50285952 50285952 1 + C T PRAD 50285951 + 50285931 50285971 41 GGAGATGGGCGAGGCCTTTGCCGCTGACATCCCCCGCATCC GGAGATGGGCGAGGCCTTTGCTGCTGACATCCCCCGCATCC < 41bp 0.591526008482351 0.801333048522548 0.8871752 0.7483263 prediction 0.419614080080393 Functional Gain - AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50285951 chr19:50285952 synonymous SNV . 0 22 hm5C_associated_SNPs_124708 0 0 1 0 1 AP2A1 chr19:50285981 5'GT 50285981 Upstream 30bp
chr19 45853908 45853908 1 + C T GBM 45853907 + 45853887 45853927 41 GCCCCTCCCCAGGCCCTTCGCCGCAGCAGCTCACTCTCCAA GCCCCTCCCCAGGCCCTTCGCTGCAGCAGCTCACTCTCCAA < 41bp 0.615204637610881 0.825009640934269 0.7759764 0.4607987 prediction 0.419610006646777 Functional Gain - KLC3 ENSG00000104892 CDS Human protein_coding chr19:45853907 chr19:45853908 nonsynonymous SNV 0.212 5 22 hm5C_associated_SNPs_124709 0 0 0 0 2 KLC3 chr19:45853899 3'AG 45853899 Downstream 10bp
chr19 45853908 45853908 1 + C T GBM 45853907 + 45853887 45853927 41 GCCCCTCCCCAGGCCCTTCGCCGCAGCAGCTCACTCTCCAA GCCCCTCCCCAGGCCCTTCGCTGCAGCAGCTCACTCTCCAA < 41bp 0.615204637610881 0.825009640934269 0.7759764 0.4607987 prediction 0.419610006646777 Functional Gain - KLC3 ENSG00000104892 CDS Human protein_coding chr19:45853907 chr19:45853908 nonsynonymous SNV 0.212 5 22 hm5C_associated_SNPs_124709 0 0 0 0 2 KLC3 chr19:45854005 5'GT 45854005 Upstream 98bp
chr8 22273287 22273287 1 + T C LIHC 22273285 + 22273265 22273305 41 CCCTGTCACCCTTCCAGCATCATCATGGACACAGCCATTAT CCCTGTCACCCTTCCAGCATCACCATGGACACAGCCATTAT < 41bp 0.411449577196376 0.709804019981419 0.029606253 0.08316606 prediction 0.419608039962839 Functional Gain - SLC39A14 ENSG00000104635 CDS Human protein_coding chr8:22273285 chr8:22273287 synonymous SNV . 0 23 hm5C_associated_SNPs_124710 0 0 1 0 1 SLC39A14 chr8:22273282 3'AG 22273282 Downstream 6bp
chrX 16965205 16965205 1 + C A SKCM 16965204 + 16965184 16965224 41 CGGCCACTGCGGCCGCCGGCCCCGTGGCTGACCTGTTTCGG CGGCCACTGCGGCCGCCGGCCACGTGGCTGACCTGTTTCGG < 41bp 0.451110243820008 0.70979059831295 0.29989958 0.3171696 prediction 0.4195811966259 Functional Gain - REPS2 ENSG00000169891 CDS Human protein_coding chrX:16965204 chrX:16965205 nonsynonymous SNV 0.023 0 22 hm5C_associated_SNPs_124715 0 0 0 0 1 REPS2 chrX:16965257 5'GT 16965257 Upstream 53bp
chr3 51979178 51979178 1 + C T SKCM 51979177 + 51979157 51979197 41 GTCATCCCGCACAACTTCGGCCACAGCCAGCCCCCGCCCAT GTCATCCCGCACAACTTCGGCTACAGCCAGCCCCCGCCCAT < 41bp 0.443014470205476 0.709787101535056 0.086301595 0.063361466 prediction 0.419574203070112 Functional Gain - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51979177 chr3:51979178 nonsynonymous SNV 0.187 2 22 hm5C_associated_SNPs_124718 0 0 0 0 1 PARP3 chr3:51979240 5'GT 51979240 Upstream 63bp
chr1 158908959 158908959 1 + C G rs116779272 158908958 + 158908938 158908978 41 GCCTTCCTGCTCTGCAGGAGCCAGCACGTCCACAGCCATGG GCCTTCCTGCTCTGCAGGAGCGAGCACGTCCACAGCCATGG < 41bp 0.389592748440098 0.709787044293867 0.079835355 0.19617173 prediction 0.419574088587735 Functional Gain - PYHIN1 ENSG00000163564 CDS Human protein_coding chr1:158908958 chr1:158908959 synonymous SNV . 0 22 hm5C_associated_SNPs_124719 0 0 0 0 2 PYHIN1 chr1:158908870 3'AG 158908870 Downstream 90bp
chr1 158908959 158908959 1 + C G rs116779272 158908958 + 158908938 158908978 41 GCCTTCCTGCTCTGCAGGAGCCAGCACGTCCACAGCCATGG GCCTTCCTGCTCTGCAGGAGCGAGCACGTCCACAGCCATGG < 41bp 0.389592748440098 0.709787044293867 0.079835355 0.19617173 prediction 0.419574088587735 Functional Gain - PYHIN1 ENSG00000163564 CDS Human protein_coding chr1:158908958 chr1:158908959 synonymous SNV . 0 22 hm5C_associated_SNPs_124719 0 0 0 0 2 PYHIN1 chr1:158909037 5'GT 158909037 Upstream 79bp
chr19 50386921 50386921 1 + C T COAD 50386920 + 50386900 50386940 41 TCACTCAGGGATGAGTATTTCCGCATGAAGCTGCAGTGGAA TCACTCAGGGATGAGTATTTCTGCATGAAGCTGCAGTGGAA < 41bp 0.631177619223528 0.84096182235099 0.7605273 0.835562 prediction 0.419568406254925 Functional Gain - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50386920 chr19:50386921 nonsynonymous SNV 0.983 1 22 hm5C_associated_SNPs_124720 0 0 1 0 2 TBC1D17 chr19:50386908 3'AG 50386908 Downstream 14bp
chr19 50386921 50386921 1 + C T COAD 50386920 + 50386900 50386940 41 TCACTCAGGGATGAGTATTTCCGCATGAAGCTGCAGTGGAA TCACTCAGGGATGAGTATTTCTGCATGAAGCTGCAGTGGAA < 41bp 0.631177619223528 0.84096182235099 0.7605273 0.835562 prediction 0.419568406254925 Functional Gain - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50386920 chr19:50386921 nonsynonymous SNV 0.983 1 22 hm5C_associated_SNPs_124720 0 0 1 0 2 TBC1D17 chr19:50387002 5'GT 50387002 Upstream 82bp
chr17 4337383 4337383 1 + C T SKCM 4337382 + 4337362 4337402 41 CCCACCTCCTGGAGCCTGCCCCCGTGGAGGGCCTACGTGGC CCCACCTCCTGGAGCCTGCCCTCGTGGAGGGCCTACGTGGC < 41bp 0.469371807079705 0.709783676363929 0.4303738 0.23322684 prediction 0.419567352727858 Functional Gain - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4337382 chr17:4337383 nonsynonymous SNV 0.996 0 22 hm5C_associated_SNPs_124721 0 0 0 0 1 SPNS3 chr17:4337461 5'GT 4337461 Upstream 79bp
chr10 104590680 104590680 1 + C T PAAD 104590679 + 104590659 104590699 41 TACAGGAGCGAGGTCCTGCTCCGAAGGGCAAATAGCTTACT TACAGGAGCGAGGTCCTGCTCTGAAGGGCAAATAGCTTACT < 41bp 0.577802804559994 0.787585197861312 0.23984405 0.067833304 prediction 0.419564786602637 Functional Gain - CYP17A1 ENSG00000148795 CDS Human protein_coding chr10:104590679 chr10:104590680 nonsynonymous SNV 0.936 4 22 hm5C_associated_SNPs_124722 0 0 0 0 1 CYP17A1 chr10:104590703 5'GT 104590703 Upstream 24bp
chr14 105945933 105945933 1 + C T UCEC 105945932 + 105945912 105945952 41 TCCCTCCACAGGAGTGAACACCGGTGCGGTGGGCAGCTACA TCCCTCCACAGGAGTGAACACTGGTGCGGTGGGCAGCTACA < 41bp 0.496166749960277 0.709779569619555 0.82038724 0.549882 prediction 0.41955913923911 Functional Gain - CRIP2 ENSG00000182809 CDS Human protein_coding chr14:105945932 chr14:105945933 synonymous SNV . 0 22 hm5C_associated_SNPs_124724 0 0 0 1 1 CRIP2 chr14:105945923 3'AG 105945923 Downstream 11bp
chr1 165677873 165677873 1 + C A UCEC 165677872 + 165677852 165677892 41 GCACTGGGGTCAGGATGATCCCCAGGGGGCTCAGAACACCA GCACTGGGGTCAGGATGATCCACAGGGGGCTCAGAACACCA < 41bp 0.600068769013628 0.809847273590087 0.060918033 0.17124686 prediction 0.419557009152919 Functional Gain - LOC440700 ENSG00000215838 ncRNA_exonic Human transcribed_processed_pseudogene chr1:165677872 chr1:165677873 . . 0 22 hm5C_associated_SNPs_124725 0 0 0 0 1 LOC440700 chr1:165677812 3'AG 165677812 Downstream 62bp
chr5 10256111 10256111 1 + C T UCEC 10256110 + 10256090 10256130 41 GAAGCGGAGCAATTGCTAGACCGAGGCATTCACCCAATCAG GAAGCGGAGCAATTGCTAGACTGAGGCATTCACCCAATCAG < 41bp 0.466354452797686 0.709777960316608 0.8423778 0.7240473 prediction 0.419555920633216 Functional Gain - CCT5 ENSG00000150753 CDS Human protein_coding chr5:10256110 chr5:10256111 stopgain 1.000 1 22 hm5C_associated_SNPs_124727 0 0 1 0 1 CCT5 chr5:10256067 3'AG 10256067 Downstream 45bp
chr7 150771283 150771283 1 + C A LUAD 150771282 + 150771262 150771302 41 AGGGGAAGCCCCGGGGCCAGCCCAACACGGCCCTGCTGTCG AGGGGAAGCCCCGGGGCCAGCACAACACGGCCCTGCTGTCG < 41bp 0.442674574707535 0.709777147419183 0.26061946 0.21951085 prediction 0.419554294838365 Functional Gain - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150771282 chr7:150771283 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_124728 0 0 1 0 1 SLC4A2 chr7:150771380 5'GT 150771380 Upstream 98bp
chr5 36686177 36686177 1 + C T COAD 36686176 + 36686156 36686196 41 CCTGCCTGCAGGGATCGCCTCCGGACCACCACCAACGTACT CCTGCCTGCAGGGATCGCCTCTGGACCACCACCAACGTACT < 41bp 0.591446016246732 0.801220683040791 0.8977679 0.8753388 prediction 0.419549333588117 Functional Gain - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36686176 chr5:36686177 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_124729 0 0 0 0 1 SLC1A3 chr5:36686167 3'AG 36686167 Downstream 11bp
chr8 11162451 11162451 1 + T G SKCM 11162449 + 11162429 11162469 41 AATCCATCGATGATGAAGCTCTTCGGAAGGTAGCTACATTT AATCCATCGATGATGAAGCTCTGCGGAAGGTAGCTACATTT < 41bp 0.35796777140615 0.709773899954978 0.13075435 0.27790263 prediction 0.419547799909955 Functional Gain - MTMR9 ENSG00000104643 CDS Human protein_coding chr8:11162449 chr8:11162451 synonymous SNV . 0 23 hm5C_associated_SNPs_124730 0 0 1 0 1 MTMR9 chr8:11162523 5'GT 11162523 Upstream 73bp
chr19 6750016 6750016 1 + C T SKCM 6750015 + 6749995 6750035 41 GGGACCCCGCCAGCTTGGAGCCCCAGATCGCTGAAACCCTG GGGACCCCGCCAGCTTGGAGCTCCAGATCGCTGAAACCCTG < 41bp 0.423216467940635 0.709773733243051 0.11390123 0.14562795 prediction 0.419547466486102 Functional Gain - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6750015 chr19:6750016 nonsynonymous SNV 0.982 3 22 hm5C_associated_SNPs_124731 0 0 1 0 2 TRIP10 chr19:6749945 3'AG 6749945 Downstream 72bp
chr19 6750016 6750016 1 + C T SKCM 6750015 + 6749995 6750035 41 GGGACCCCGCCAGCTTGGAGCCCCAGATCGCTGAAACCCTG GGGACCCCGCCAGCTTGGAGCTCCAGATCGCTGAAACCCTG < 41bp 0.423216467940635 0.709773733243051 0.11390123 0.14562795 prediction 0.419547466486102 Functional Gain - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6750015 chr19:6750016 nonsynonymous SNV 0.982 3 22 hm5C_associated_SNPs_124731 0 0 1 0 2 TRIP10 chr19:6750077 5'GT 6750077 Upstream 62bp
chr15 45559992 45559992 1 + T C LGG 45559990 + 45559970 45560010 41 AGGAGGGGGTAAAGCTGCCCCGTGGGTGAGTCCAAGGAGGC AGGAGGGGGTAAAGCTGCCCCGCGGGTGAGTCCAAGGAGGC < 41bp 0.619218247730408 0.828989738865862 0.390702 0.4804899 prediction 0.419542982270908 Functional Gain - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45559990 chr15:45559992 synonymous SNV . 0 23 hm5C_associated_SNPs_124733 0 0 0 0 1 SLC28A2 chr15:45559994 5'GT 45559994 Upstream 3bp
chr22 21403397 21403397 1 + A G UCEC 21403394 + 21403374 21403414 41 GCCGAACTCCTGCTGGCCCACACAGACCTGAAGTCCCTGGA GCCGAACTCCTGCTGGCCCACACGGACCTGAAGTCCCTGGA < 41bp 0.59904384464596 0.808814257264688 0.21103817 0.20571291 prediction 0.419540825237455 Functional Gain - LRRC74B ENSG00000187905 CDS Human protein_coding chr22:21403394 chr22:21403397 synonymous SNV . 0 24 hm5C_associated_SNPs_124736 0 0 0 0 1 LRRC74B chr22:21403446 5'GT 21403446 Upstream 50bp
chr5 150052039 150052039 1 + C A LUSC 150052038 + 150052018 150052058 41 GGCCGAAGTCACACCCCCAGCCCCAACGACTACCGAAATTT GGCCGAAGTCACACCCCCAGCACCAACGACTACCGAAATTT < 41bp 0.443601889797653 0.709769430531904 0.20879734 0.21101272 prediction 0.419538861063808 Functional Gain - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150052038 chr5:150052039 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_124737 0 0 0 0 1 MYOZ3 chr5:150052064 5'GT 150052064 Upstream 26bp
chr1 155583937 155583937 1 + A G rs3844257 155583934 + 155583914 155583954 41 AGCCTTGGCCAGAGACCTCACCAAACTCGACTTGCGGCGCT AGCCTTGGCCAGAGACCTCACCAGACTCGACTTGCGGCGCT < 41bp 0.587382427554928 0.79714941079003 0.29510057 0.6106676 prediction 0.419533966470204 Functional Gain - MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155583934 chr1:155583937 nonsynonymous SNV 0.604 0 24 hm5C_associated_SNPs_124740 0 0 0 0 2 MSTO1 chr1:155583850 3'AG 155583850 Downstream 88bp
chr1 155583937 155583937 1 + A G rs3844257 155583934 + 155583914 155583954 41 AGCCTTGGCCAGAGACCTCACCAAACTCGACTTGCGGCGCT AGCCTTGGCCAGAGACCTCACCAGACTCGACTTGCGGCGCT < 41bp 0.587382427554928 0.79714941079003 0.29510057 0.6106676 prediction 0.419533966470204 Functional Gain - MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155583934 chr1:155583937 nonsynonymous SNV 0.604 0 24 hm5C_associated_SNPs_124740 0 0 0 0 2 MSTO1 chr1:155583853 3'AG 155583853 Downstream 85bp
chr12 104720157 104720157 1 + A G rs34368560 104720154 + 104720134 104720174 41 GCAATAGGAAGAGATGCTTGCACAAGAAAAATTGGCTTAGA GCAATAGGAAGAGATGCTTGCACGAGAAAAATTGGCTTAGA < 41bp 0.514902662846184 0.724662290193723 0.29926366 0.4875422 prediction 0.419519254695079 Functional Gain - TXNRD1 ENSG00000198431 CDS Human protein_coding chr12:104720154 chr12:104720157 synonymous SNV . 0 24 hm5C_associated_SNPs_124742 0 0 1 0 2 TXNRD1 chr12:104720125 3'AG 104720125 Downstream 33bp
chr12 104720157 104720157 1 + A G rs34368560 104720154 + 104720134 104720174 41 GCAATAGGAAGAGATGCTTGCACAAGAAAAATTGGCTTAGA GCAATAGGAAGAGATGCTTGCACGAGAAAAATTGGCTTAGA < 41bp 0.514902662846184 0.724662290193723 0.29926366 0.4875422 prediction 0.419519254695079 Functional Gain - TXNRD1 ENSG00000198431 CDS Human protein_coding chr12:104720154 chr12:104720157 synonymous SNV . 0 24 hm5C_associated_SNPs_124742 0 0 1 0 2 TXNRD1 chr12:104720201 5'GT 104720201 Upstream 45bp
chr3 162443643 162443643 1 + A G rs564465404 162443640 + 162443620 162443660 41 GGGCCGGAGTTCCAGGGGCTCTGAAAGTGGCTGCCAGGTGA GGGCCGGAGTTCCAGGGGCTCTGGAAGTGGCTGCCAGGTGA < 41bp 0.543314008762914 0.753072498002939 0.40273497 0.83819914 prediction 0.419516978480049 Functional Gain - OTOL1;LINC01192 ENSG00000243044;ENSG00000241168 intergenic Human other chr3:162443640 chr3:162443643 . . 0 24 hm5C_associated_SNPs_124744 0 0 0 0 1 OTOL1;LINC01192 chr3:162443656 5'GT 162443656 Upstream 14bp
chr21 47539020 47539020 1 + C T COAD 47539019 + 47538999 47539039 41 GCGGGCCTGGGCCCCGCGGACCCAAAGGCGAGCCGGTGAGT GCGGGCCTGGGCCCCGCGGACTCAAAGGCGAGCCGGTGAGT < 41bp 0.436215589886197 0.709751760158166 0.33350122 0.5514565 prediction 0.419503520316332 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47539019 chr21:47539020 nonsynonymous SNV 0.650 4 22 hm5C_associated_SNPs_124747 0 0 0 0 2 COL6A2 chr21:47538944 3'AG 47538944 Downstream 77bp
chr21 47539020 47539020 1 + C T COAD 47539019 + 47538999 47539039 41 GCGGGCCTGGGCCCCGCGGACCCAAAGGCGAGCCGGTGAGT GCGGGCCTGGGCCCCGCGGACTCAAAGGCGAGCCGGTGAGT < 41bp 0.436215589886197 0.709751760158166 0.33350122 0.5514565 prediction 0.419503520316332 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47539019 chr21:47539020 nonsynonymous SNV 0.650 4 22 hm5C_associated_SNPs_124747 0 0 0 0 2 COL6A2 chr21:47539033 5'GT 47539033 Upstream 14bp
chr18 72775182 72775182 1 + C T rs148026190 72775181 + 72775161 72775201 41 GGAGACAGACAGCCCCTTCACCGCGGCGGCCTTGGCAGAAG GGAGACAGACAGCCCCTTCACTGCGGCGGCCTTGGCAGAAG < 41bp 0.478808777497196 0.709751161218435 0.54695374 0.2442781 prediction 0.41950232243687 Functional Gain - ZNF407 ENSG00000215421 CDS Human protein_coding chr18:72775181 chr18:72775182 synonymous SNV . 0 22 hm5C_associated_SNPs_124749 0 0 0 0 1 ZNF407 chr18:72775106 3'AG 72775106 Downstream 77bp
chr3 51423764 51423764 1 + T C UCEC 51423761 + 51423741 51423781 41 AAGCAAGAGGCAAAGAGAATCGGTTGGTAAGTAGCTGGTGA AAGCAAGAGGCAAAGAGAATCGGCTGGTAAGTAGCTGGTGA < 41bp 0.507560786929975 0.717311650892919 0.40856838 0.7683356 prediction 0.419501727925887 Functional Gain - MANF ENSG00000145050 CDS Human protein_coding chr3:51423761 chr3:51423764 synonymous SNV . 0 24 hm5C_associated_SNPs_124750 0 0 1 0 1 MANF chr3:51423766 5'GT 51423766 Upstream 3bp
chr16 31500573 31500573 1 + C A COAD 31500569 + 31500549 31500589 41 GCTTTCCTCTGCGGCGTGCACTACCTCTACTTCGCCATTGT GCTTTCCTCTGCGGCGTGCACTACATCTACTTCGCCATTGT < 41bp 0.282696217381625 0.709749592462361 0.32349342 0.7703731 prediction 0.419499184924721 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500569 chr16:31500573 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_124751 0 0 0 11 1 SLC5A2 chr16:31500659 5'GT 31500659 Upstream 87bp
chr22 35808531 35808531 1 + C T SKCM 35808530 + 35808510 35808550 41 CTTTGCTGGGGCCGTGAGCCCCCAGGAGGAGGAGGAGTTCC CTTTGCTGGGGCCGTGAGCCCTCAGGAGGAGGAGGAGTTCC < 41bp 0.617455251954306 0.827195204844183 0.26362145 0.20355874 prediction 0.419479905779753 Functional Gain - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35808530 chr22:35808531 synonymous SNV . 0 22 hm5C_associated_SNPs_124754 0 0 1 0 1 MCM5 chr22:35808503 3'AG 35808503 Downstream 29bp
chr20 33851734 33851734 1 + C A SARC 33851733 + 33851713 33851753 41 AAGCTGCCCCAGGACGATCTCCAGGGCATCCAGAAGATCTA AAGCTGCCCCAGGACGATCTCAAGGGCATCCAGAAGATCTA < 41bp 0.427150652440148 0.709738481271422 0.8694688 0.877859 prediction 0.419476962542844 Functional Gain - MMP24 ENSG00000125966 CDS Human protein_coding chr20:33851733 chr20:33851734 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_124755 0 0 0 0 1 MMP24 chr20:33851755 5'GT 33851755 Upstream 22bp
chr17 19459147 19459147 1 + C A READ 19459143 + 19459123 19459163 41 TGCCTGCAGGACTGGGCCTCCTTCCTCCGCCTGGCCATCCC TGCCTGCAGGACTGGGCCTCCTTCATCCGCCTGGCCATCCC < 41bp 0.281097719990668 0.709737946596777 0.06703928 0.28292263 prediction 0.419475893193555 Functional Gain - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19459143 chr17:19459147 nonsynonymous SNV 0.660 0 25 hm5C_associated_SNPs_124757 0 0 1 1 2 SLC47A1 chr17:19459053 3'AG 19459053 Downstream 95bp
chr17 19459147 19459147 1 + C A READ 19459143 + 19459123 19459163 41 TGCCTGCAGGACTGGGCCTCCTTCCTCCGCCTGGCCATCCC TGCCTGCAGGACTGGGCCTCCTTCATCCGCCTGGCCATCCC < 41bp 0.281097719990668 0.709737946596777 0.06703928 0.28292263 prediction 0.419475893193555 Functional Gain - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19459143 chr17:19459147 nonsynonymous SNV 0.660 0 25 hm5C_associated_SNPs_124757 0 0 1 1 2 SLC47A1 chr17:19459222 5'GT 19459222 Upstream 76bp
chr1 899557 899557 1 + C A LIHC 899556 + 899536 899576 41 CACTGTGGAGAAGTATGAGCCCCAGGTGCATAGTGCACCCC CACTGTGGAGAAGTATGAGCCACAGGTGCATAGTGCACCCC < 41bp 0.453480261861661 0.709737303480022 0.32249427 0.77012324 prediction 0.419474606960044 Functional Gain - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:899556 chr1:899557 synonymous SNV . 0 22 hm5C_associated_SNPs_124758 0 0 0 0 2 KLHL17 chr1:899487 3'AG 899487 Downstream 71bp
chr1 899557 899557 1 + C A LIHC 899556 + 899536 899576 41 CACTGTGGAGAAGTATGAGCCCCAGGTGCATAGTGCACCCC CACTGTGGAGAAGTATGAGCCACAGGTGCATAGTGCACCCC < 41bp 0.453480261861661 0.709737303480022 0.32249427 0.77012324 prediction 0.419474606960044 Functional Gain - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:899556 chr1:899557 synonymous SNV . 0 22 hm5C_associated_SNPs_124758 0 0 0 0 2 KLHL17 chr1:899560 5'GT 899560 Upstream 4bp
chr1 114448312 114448312 1 + A G LAML 114448309 + 114448289 114448329 41 CTTCTTGTCTCACATGCACTCGGACCACACCGTGGGCCTGT CTTCTTGTCTCACATGCACTCGGGCCACACCGTGGGCCTGT < 41bp 0.596896457363887 0.806633549512224 0.90347743 0.9298498 prediction 0.419474184296675 Functional Gain - DCLRE1B ENSG00000118655 CDS Human protein_coding chr1:114448309 chr1:114448312 nonsynonymous SNV 0.984 5 24 hm5C_associated_SNPs_124759 0 0 1 0 1 DCLRE1B chr1:114448397 5'GT 114448397 Upstream 86bp
chr19 54401258 54401258 1 + C A LUSC 54401257 + 54401237 54401277 41 TCTCCCATCCCCTCCCCTTCCCCTAGTCCCACCGACCCCAA TCTCCCATCCCCTCCCCTTCCACTAGTCCCACCGACCCCAA < 41bp 0.622728716656425 0.832465404754335 0.13466823 0.1727967 prediction 0.419473376195819 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54401257 chr19:54401258 nonsynonymous SNV 0.765 0 22 hm5C_associated_SNPs_124761 0 0 0 0 1 PRKCG chr19:54401213 3'AG 54401213 Downstream 46bp
chr1 1551930 1551930 1 + C T rs576281318 1551929 + 1551909 1551949 41 AGAGGCCAGTCCCAAAGTTTCCAGGCATCAGGGCTGCAGCC AGAGGCCAGTCCCAAAGTTTCTAGGCATCAGGGCTGCAGCC < 41bp 0.539744932898647 0.749477412526445 0.9102154 0.89126074 prediction 0.419464959255596 Functional Gain - MIB2 ENSG00000197530 CDS Human protein_coding chr1:1551929 chr1:1551930 stopgain 0.017 0 22 hm5C_associated_SNPs_124762 0 0 1 0 2 MIB2 chr1:1551888 3'AG 1551888 Downstream 43bp
chr1 1551930 1551930 1 + C T rs576281318 1551929 + 1551909 1551949 41 AGAGGCCAGTCCCAAAGTTTCCAGGCATCAGGGCTGCAGCC AGAGGCCAGTCCCAAAGTTTCTAGGCATCAGGGCTGCAGCC < 41bp 0.539744932898647 0.749477412526445 0.9102154 0.89126074 prediction 0.419464959255596 Functional Gain - MIB2 ENSG00000197530 CDS Human protein_coding chr1:1551929 chr1:1551930 stopgain 0.017 0 22 hm5C_associated_SNPs_124762 0 0 1 0 2 MIB2 chr1:1551994 5'GT 1551994 Upstream 65bp
chr15 42137203 42137203 1 + T C ESCA 42137200 + 42137180 42137220 41 AGGAGCTGGCCGAGCGTGCCCGCTTGGGCTACCCAAGCTGC AGGAGCTGGCCGAGCGTGCCCGCCTGGGCTACCCAAGCTGC < 41bp 0.5059216871793 0.715653317377595 0.054453045 0.0702948 prediction 0.41946326039659 Functional Gain - JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42137200 chr15:42137203 synonymous SNV . 0 24 hm5C_associated_SNPs_124763 0 0 1 0 1 JMJD7-PLA2G4B;PLA2G4B chr15:42137268 5'GT 42137268 Upstream 66bp
chr16 27786322 27786322 1 + C T CESC 27786321 + 27786301 27786341 41 GAGGGTGTGGGCGGGGACGTCCGCACCCCAGACAAGCTCAT GAGGGTGTGGGCGGGGACGTCTGCACCCCAGACAAGCTCAT < 41bp 0.446639288937144 0.709715105940181 0.6578251 0.62529874 prediction 0.419430211880362 Functional Gain - KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27786321 chr16:27786322 nonsynonymous SNV 0.058 4 22 hm5C_associated_SNPs_124765 0 0 0 0 2 KIAA0556 chr16:27786266 3'AG 27786266 Downstream 57bp
chr16 27786322 27786322 1 + C T CESC 27786321 + 27786301 27786341 41 GAGGGTGTGGGCGGGGACGTCCGCACCCCAGACAAGCTCAT GAGGGTGTGGGCGGGGACGTCTGCACCCCAGACAAGCTCAT < 41bp 0.446639288937144 0.709715105940181 0.6578251 0.62529874 prediction 0.419430211880362 Functional Gain - KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27786321 chr16:27786322 nonsynonymous SNV 0.058 4 22 hm5C_associated_SNPs_124765 0 0 0 0 2 KIAA0556 chr16:27786405 5'GT 27786405 Upstream 84bp
chr2 32422850 32422850 1 + C A UCEC 32422846 + 32422826 32422866 41 ATCCATTTGTTTTGATTGATCTTGCTGGAGCATTTGCTCTT ATCCATTTGTTTTGATTGATCTTGATGGAGCATTTGCTCTT < 41bp 0.306571402985239 0.709714428925819 0.04744056 0.04267153 prediction 0.419428857851639 Functional Gain - SLC30A6 ENSG00000152683 CDS Human protein_coding chr2:32422846 chr2:32422850 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_124766 0 0 1 0 2 SLC30A6 chr2:32422776 3'AG 32422776 Downstream 75bp
chr2 32422850 32422850 1 + C A UCEC 32422846 + 32422826 32422866 41 ATCCATTTGTTTTGATTGATCTTGCTGGAGCATTTGCTCTT ATCCATTTGTTTTGATTGATCTTGATGGAGCATTTGCTCTT < 41bp 0.306571402985239 0.709714428925819 0.04744056 0.04267153 prediction 0.419428857851639 Functional Gain - SLC30A6 ENSG00000152683 CDS Human protein_coding chr2:32422846 chr2:32422850 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_124766 0 0 1 0 2 SLC30A6 chr2:32422895 5'GT 32422895 Upstream 46bp
chr11 64807221 64807221 1 + C A COAD 64807217 + 64807197 64807237 41 AGGCAGCTGAGTACCTGAAGCGGGCAGAGGAGATCCTGCGC AGGCAGCTGAGTACCTGAAGCGGGAAGAGGAGATCCTGCGC < 41bp 0.724762272946399 0.934472892861375 0.7705612 0.8540572 prediction 0.419421239829952 Functional Gain - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64807217 chr11:64807221 nonsynonymous SNV 0.977 3 25 hm5C_associated_SNPs_124768 0 0 1 0 1 SNX15 chr11:64807158 3'AG 64807158 Downstream 64bp
chr2 143642982 143642982 1 + A G COAD 143642979 + 143642959 143642999 41 TGCCGGCTGACACAGTGCAGCGCATTGCGGCTGAACTCAAA TGCCGGCTGACACAGTGCAGCGCGTTGCGGCTGAACTCAAA < 41bp 0.589049832790514 0.798753286580093 0.35609496 0.14481294 prediction 0.419406907579159 Functional Gain - KYNU ENSG00000115919 CDS Human protein_coding chr2:143642979 chr2:143642982 nonsynonymous SNV 0.123 0 24 hm5C_associated_SNPs_124772 0 0 1 0 1 KYNU chr2:143642918 3'AG 143642918 Downstream 65bp
chr1 20931476 20931476 1 + T C rs76249360 20931473 + 20931453 20931493 41 GGCATCTGTGCTGAACGGACCGCTATCCAGAAGGCCGTCTC GGCATCTGTGCTGAACGGACCGCCATCCAGAAGGCCGTCTC < 41bp 0.538493056171202 0.748187610265362 0.106337845 0.2532419 prediction 0.419389108188321 Functional Gain - CDA ENSG00000158825 CDS Human protein_coding chr1:20931473 chr1:20931476 synonymous SNV . 0 24 hm5C_associated_SNPs_124775 0 0 0 0 1 CDA chr1:20931532 5'GT 20931532 Upstream 57bp
chr5 134007542 134007542 1 + T C GBM 134007539 + 134007519 134007559 41 AACGGATCTATGGTGGTCCACAGTAGTTACGACGAGATTGA AACGGATCTATGGTGGTCCACAGCAGTTACGACGAGATTGA < 41bp 0.531138395690507 0.740822158828142 0.14823037 0.3736066 prediction 0.419367526275269 Functional Gain - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134007539 chr5:134007542 synonymous SNV . 0 24 hm5C_associated_SNPs_124780 0 0 1 0 2 SEC24A chr5:134007499 3'AG 134007499 Downstream 44bp
chr5 134007542 134007542 1 + T C GBM 134007539 + 134007519 134007559 41 AACGGATCTATGGTGGTCCACAGTAGTTACGACGAGATTGA AACGGATCTATGGTGGTCCACAGCAGTTACGACGAGATTGA < 41bp 0.531138395690507 0.740822158828142 0.14823037 0.3736066 prediction 0.419367526275269 Functional Gain - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134007539 chr5:134007542 synonymous SNV . 0 24 hm5C_associated_SNPs_124780 0 0 1 0 2 SEC24A chr5:134007576 5'GT 134007576 Upstream 35bp
chr20 61950436 61950436 1 + C A LUAD 61950435 + 61950415 61950455 41 TCTACCCAGCCCCCCTACCTCCAGAGCACACCATCGTCTTC TCTACCCAGCCCCCCTACCTCAAGAGCACACCATCGTCTTC < 41bp 0.637319263933023 0.84699939916961 0.8841898 0.91754675 prediction 0.419360270473173 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61950435 chr20:61950436 nonsynonymous SNV 0.002 4 22 hm5C_associated_SNPs_124783 0 0 0 0 1 COL20A1 chr20:61950410 3'AG 61950410 Downstream 27bp
chr8 145535748 145535748 1 + C T SKCM 145535747 + 145535727 145535767 41 GAGTCCCGGGCGCCCATCTTCCGTGGACACCCTCTTGTCCC GAGTCCCGGGCGCCCATCTTCTGTGGACACCCTCTTGTCCC < 41bp 0.571973153336812 0.781652374132267 0.5744095 0.2532284 prediction 0.41935844159091 Functional Gain - HSF1 ENSG00000185122 CDS Human protein_coding chr8:145535747 chr8:145535748 synonymous SNV . 0 22 hm5C_associated_SNPs_124786 0 0 1 0 1 HSF1 chr8:145535649 3'AG 145535649 Downstream 100bp
chr19 41765493 41765493 1 + C T UCEC 41765492 + 41765472 41765512 41 CGCGGTGCTGGGAGCTAAATCCCCAGGACCGGCCAAGTTTT CGCGGTGCTGGGAGCTAAATCTCCAGGACCGGCCAAGTTTT < 41bp 0.640361954964229 0.850040929884048 0.3570399 0.9493864 prediction 0.419357949839637 Functional Gain - AXL ENSG00000167601 CDS Human protein_coding chr19:41765492 chr19:41765493 nonsynonymous SNV 0.973 4 22 hm5C_associated_SNPs_124787 0 0 0 0 1 AXL chr19:41765458 3'AG 41765458 Downstream 36bp
chr3 120627085 120627085 1 + C G rs146476187 120627081 + 120627061 120627101 41 GTTAGGACCTCGGAGAGCGCCAGGCGCCGCGACCAGAGGGC GTTAGGACCTCGGAGAGCGCCAGGGGCCGCGACCAGAGGGC < 41bp 0.61298091014534 0.822656861488108 0.8769132 0.9055178 prediction 0.419351902685535 Functional Gain - STXBP5L ENSG00000145087 UTR5 Human protein_coding chr3:120627081 chr3:120627085 . . 0 25 hm5C_associated_SNPs_124788 0 0 0 0 1 STXBP5L chr3:120627181 5'GT 120627181 Upstream 97bp
chr19 10753065 10753065 1 + T C UCEC 10753063 + 10753043 10753083 41 ACGGTGATCGTTGGCTCCTACTTGATTGCACACGGTTTCTT ACGGTGATCGTTGGCTCCTACTCGATTGCACACGGTTTCTT < 41bp 0.674932733795241 0.884606922450598 0.21534279 0.85821426 prediction 0.419348377310714 Functional Gain - SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10753063 chr19:10753065 nonsynonymous SNV 0.980 2 23 hm5C_associated_SNPs_124790 0 0 0 0 2 SLC44A2 chr19:10753043 3'AG 10753043 Downstream 23bp
chr19 10753065 10753065 1 + T C UCEC 10753063 + 10753043 10753083 41 ACGGTGATCGTTGGCTCCTACTTGATTGCACACGGTTTCTT ACGGTGATCGTTGGCTCCTACTCGATTGCACACGGTTTCTT < 41bp 0.674932733795241 0.884606922450598 0.21534279 0.85821426 prediction 0.419348377310714 Functional Gain - SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10753063 chr19:10753065 nonsynonymous SNV 0.980 2 23 hm5C_associated_SNPs_124790 0 0 0 0 2 SLC44A2 chr19:10753127 5'GT 10753127 Upstream 63bp
chr22 51183173 51183173 1 + T C UCEC 51183170 + 51183150 51183190 41 AGCTGGGGGGTAGGCTGTGCCCGTGCCAAGCGCCCCGGAAT AGCTGGGGGGTAGGCTGTGCCCGCGCCAAGCGCCCCGGAAT < 41bp 0.500521824201253 0.71019589943278 0.59306777 0.62558377 prediction 0.419348150463053 Functional Gain - ACR ENSG00000100312 CDS Human protein_coding chr22:51183170 chr22:51183173 synonymous SNV . 0 24 hm5C_associated_SNPs_124791 0 0 0 0 1 ACR chr22:51183081 3'AG 51183081 Downstream 93bp
chr1 204951138 204951138 1 + C A rs61741829 204951137 + 204951117 204951157 41 AGAGTCCGTCATCGGTTACTCCGGAGAAGATTGTGAGTAGT AGAGTCCGTCATCGGTTACTCAGGAGAAGATTGTGAGTAGT < 41bp 0.472673017686552 0.709663236140382 0.5137624 0.91731477 prediction 0.419326472280764 Functional Gain - NFASC ENSG00000163531 CDS Human protein_coding chr1:204951137 chr1:204951138 synonymous SNV . 0 22 hm5C_associated_SNPs_124795 0 0 0 0 1 NFASC chr1:204951148 5'GT 204951148 Upstream 11bp
chr11 13398107 13398107 1 + C T STAD 13398106 + 13398086 13398126 41 GTCCAGGTCCAGAGTGGACACCGGACACCTTGGCCAAGTTG GTCCAGGTCCAGAGTGGACACTGGACACCTTGGCCAAGTTG < 41bp 0.543253268734482 0.752902969552585 0.31628278 0.35067564 prediction 0.419299401636207 Functional Gain - ARNTL ENSG00000133794 CDS Human protein_coding chr11:13398106 chr11:13398107 synonymous SNV . 0 22 hm5C_associated_SNPs_124799 0 0 0 0 1 ARNTL chr11:13398092 3'AG 13398092 Downstream 16bp
chr15 69327818 69327818 1 + T A LUAD 69327814 + 69327794 69327834 41 ACGTGGTAGTGGGGCTGTCCCTCGTGCACACCGTGGCTCAC ACGTGGTAGTGGGGCTGTCCCTCGAGCACACCGTGGCTCAC < 41bp 0.696713293042499 0.906362500440168 0.14096841 0.3324626 prediction 0.419298414795338 Functional Gain - NOX5 ENSG00000255346 CDS Human protein_coding chr15:69327814 chr15:69327818 nonsynonymous SNV 0.015 3 25 hm5C_associated_SNPs_124800 0 0 0 1 1 NOX5 chr15:69327847 5'GT 69327847 Upstream 30bp
chr20 55209271 55209271 1 + C T READ 55209270 + 55209250 55209290 41 ACAAGATTGGGTTGAATCTTCCGGCCGGGAGGCGGAAAGCC ACAAGATTGGGTTGAATCTTCTGGCCGGGAGGCGGAAAGCC < 41bp 0.452054746233126 0.709646991645791 0.6642883 0.495515 prediction 0.419293983291582 Functional Gain - TFAP2C ENSG00000087510 CDS Human protein_coding chr20:55209270 chr20:55209271 nonsynonymous SNV 0.160 5 22 hm5C_associated_SNPs_124801 0 0 1 0 2 TFAP2C chr20:55209206 3'AG 55209206 Downstream 66bp
chr20 55209271 55209271 1 + C T READ 55209270 + 55209250 55209290 41 ACAAGATTGGGTTGAATCTTCCGGCCGGGAGGCGGAAAGCC ACAAGATTGGGTTGAATCTTCTGGCCGGGAGGCGGAAAGCC < 41bp 0.452054746233126 0.709646991645791 0.6642883 0.495515 prediction 0.419293983291582 Functional Gain - TFAP2C ENSG00000087510 CDS Human protein_coding chr20:55209270 chr20:55209271 nonsynonymous SNV 0.160 5 22 hm5C_associated_SNPs_124801 0 0 1 0 2 TFAP2C chr20:55209324 5'GT 55209324 Upstream 54bp
chr8 82196782 82196782 1 + A G STAD 82196779 + 82196759 82196799 41 TGAACAATGTCACCTGTACTCGGATCTATGAAAAAGTAGAA TGAACAATGTCACCTGTACTCGGGTCTATGAAAAAGTAGAA < 41bp 0.545506524789131 0.755150496979114 0.7451504 0.8674369 prediction 0.419287944379966 Functional Gain - FABP5 ENSG00000164687 CDS Human protein_coding chr8:82196779 chr8:82196782 nonsynonymous SNV 0.985 0 24 hm5C_associated_SNPs_124803 0 0 0 0 1 FABP5 chr8:82196749 3'AG 82196749 Downstream 34bp
chr1 908389 908389 1 + C A rs75748725 908388 + 908368 908408 41 GCTGCTCCTCCCAGCACACACCGGTGAGCGCTTACGGGGTG GCTGCTCCTCCCAGCACACACAGGTGAGCGCTTACGGGGTG < 41bp 0.634408336735492 0.84404968724624 0.8694157 0.9221853 prediction 0.419282701021497 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:908388 chr1:908389 nonsynonymous SNV 0.004 1 22 hm5C_associated_SNPs_124804 0 0 0 0 1 PLEKHN1 chr1:908390 5'GT 908390 Upstream 2bp
chr7 44147504 44147504 1 + C G LUSC 44147501 + 44147481 44147521 41 AGAGCCCCCTGAGGAGAAGGCCCCGGCCCCAGCCCCGGAGG AGAGCCCCCTGAGGAGAAGGCCCGGGCCCCAGCCCCGGAGG < 41bp 0.508626950789892 0.718253738065046 0.13976187 0.29106963 prediction 0.419253574550307 Functional Gain - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44147501 chr7:44147504 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_124808 0 0 0 0 2 AEBP1 chr7:44147408 3'AG 44147408 Downstream 97bp
chr7 44147504 44147504 1 + C G LUSC 44147501 + 44147481 44147521 41 AGAGCCCCCTGAGGAGAAGGCCCCGGCCCCAGCCCCGGAGG AGAGCCCCCTGAGGAGAAGGCCCGGGCCCCAGCCCCGGAGG < 41bp 0.508626950789892 0.718253738065046 0.13976187 0.29106963 prediction 0.419253574550307 Functional Gain - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44147501 chr7:44147504 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_124808 0 0 0 0 2 AEBP1 chr7:44147530 5'GT 44147530 Upstream 27bp
chr20 44639177 44639177 1 + C A SARC 44639176 + 44639156 44639196 41 GTGATTGACGACGCCTTTGCCCGCGCCTTCGCACTGTGGAG GTGATTGACGACGCCTTTGCCAGCGCCTTCGCACTGTGGAG < 41bp 0.444595932627585 0.709621805814287 0.27773684 0.8896757 prediction 0.419243611628574 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44639176 chr20:44639177 nonsynonymous SNV 0.983 2 22 hm5C_associated_SNPs_124810 0 0 1 0 2 MMP9 chr20:44639122 3'AG 44639122 Downstream 56bp
chr20 44639177 44639177 1 + C A SARC 44639176 + 44639156 44639196 41 GTGATTGACGACGCCTTTGCCCGCGCCTTCGCACTGTGGAG GTGATTGACGACGCCTTTGCCAGCGCCTTCGCACTGTGGAG < 41bp 0.444595932627585 0.709621805814287 0.27773684 0.8896757 prediction 0.419243611628574 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44639176 chr20:44639177 nonsynonymous SNV 0.983 2 22 hm5C_associated_SNPs_124810 0 0 1 0 2 MMP9 chr20:44639270 5'GT 44639270 Upstream 94bp
chrX 129306267 129306267 1 + C T CESC 129306266 + 129306246 129306286 41 CGTGGACTTCAGGGAGAAGACCGTGGAAATCGAGGGCGAGA CGTGGACTTCAGGGAGAAGACTGTGGAAATCGAGGGCGAGA < 41bp 0.493238262735428 0.709620849703362 0.39353794 0.10730028 prediction 0.419241699406725 Functional Gain - RAB33A ENSG00000134594 CDS Human protein_coding chrX:129306266 chrX:129306267 synonymous SNV . 0 22 hm5C_associated_SNPs_124811 0 0 0 0 1 RAB33A chrX:129306294 5'GT 129306294 Upstream 28bp
chr17 37872089 37872089 1 + T G BRCA 37872086 + 37872066 37872106 41 AGTGGACTGGCCCTCATCCACCATAACACCCACCTCTGCTT AGTGGACTGGCCCTCATCCACCAGAACACCCACCTCTGCTT < 41bp 0.306619571656364 0.709619592799998 0.043883324 0.07780686 prediction 0.419239185599995 Functional Gain - ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37872086 chr17:37872089 nonsynonymous SNV 0.549 0 24 hm5C_associated_SNPs_124813 0 0 1 0 1 ERBB2 chr17:37871993 3'AG 37871993 Downstream 97bp
chr6 109274514 109274514 1 + C T rs139586062 109274513 + 109274493 109274533 41 GGGCGTGGGCCCGGTGCTGGCCGCCAACCCGGGGATAGTGG GGGCGTGGGCCCGGTGCTGGCTGCCAACCCGGGGATAGTGG < 41bp 0.459563750481014 0.709618421217145 0.87394667 0.37291253 prediction 0.41923684243429 Functional Gain - ARMC2 ENSG00000118690 CDS Human protein_coding chr6:109274513 chr6:109274514 synonymous SNV . 0 22 hm5C_associated_SNPs_124814 0 0 0 0 1 ARMC2 chr6:109274554 5'GT 109274554 Upstream 41bp
chr21 47410914 47410914 1 + C G LUSC 47410913 + 47410893 47410933 41 GGCATTCAAGGACCCCCTGGCCCCAAGGGAGACCCCGGTGC GGCATTCAAGGACCCCCTGGCGCCAAGGGAGACCCCGGTGC < 41bp 0.375885085362048 0.709613854713981 0.19210386 0.41798693 prediction 0.419227709427962 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47410913 chr21:47410914 nonsynonymous SNV 0.568 2 22 hm5C_associated_SNPs_124818 0 0 1 0 2 COL6A1 chr21:47410893 3'AG 47410893 Downstream 22bp
chr21 47410914 47410914 1 + C G LUSC 47410913 + 47410893 47410933 41 GGCATTCAAGGACCCCCTGGCCCCAAGGGAGACCCCGGTGC GGCATTCAAGGACCCCCTGGCGCCAAGGGAGACCCCGGTGC < 41bp 0.375885085362048 0.709613854713981 0.19210386 0.41798693 prediction 0.419227709427962 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47410913 chr21:47410914 nonsynonymous SNV 0.568 2 22 hm5C_associated_SNPs_124818 0 0 1 0 2 COL6A1 chr21:47410955 5'GT 47410955 Upstream 42bp
chr11 124487338 124487338 1 + C T rs149324907 124487337 + 124487317 124487357 41 GTGCAGCACATGCTGAAGATCCGGCAGAAGAGTTCCGACCC GTGCAGCACATGCTGAAGATCTGGCAGAAGAGTTCCGACCC < 41bp 0.603059985780327 0.812672447745299 0.64396226 0.19555938 prediction 0.419224923929943 Functional Gain - PANX3 ENSG00000154143 CDS Human protein_coding chr11:124487337 chr11:124487338 nonsynonymous SNV 0.985 2 22 hm5C_associated_SNPs_124819 0 0 0 0 1 PANX3 chr11:124487384 5'GT 124487384 Upstream 47bp
chr2 241631714 241631714 1 + T C UCEC 241631712 + 241631692 241631732 41 GGCATGCAGGCCGCCTGCACCCTGATGCGCCTCTGCTGGGC GGCATGCAGGCCGCCTGCACCCCGATGCGCCTCTGCTGGGC < 41bp 0.613307398316633 0.822918900949253 0.31744373 0.12842584 prediction 0.419223005265241 Functional Gain - AQP12A ENSG00000184945 CDS Human protein_coding chr2:241631712 chr2:241631714 nonsynonymous SNV 0.008 3 23 hm5C_associated_SNPs_124820 0 0 0 0 1 AQP12A chr2:241631629 3'AG 241631629 Downstream 86bp
chr2 191551947 191551947 1 + C T UCEC 191551946 + 191551926 191551966 41 GGAGAAAGACCTTTGAATCTCCGAATGCCTAATTTACAGAA GGAGAAAGACCTTTGAATCTCTGAATGCCTAATTTACAGAA < 41bp 0.452912982375704 0.709609312564696 0.27357754 0.07016024 prediction 0.419218625129392 Functional Gain - NAB1 ENSG00000138386 CDS Human protein_coding chr2:191551946 chr2:191551947 stopgain 1.000 1 22 hm5C_associated_SNPs_124821 0 0 0 0 2 NAB1 chr2:191551927 3'AG 191551927 Downstream 21bp
chr2 191551947 191551947 1 + C T UCEC 191551946 + 191551926 191551966 41 GGAGAAAGACCTTTGAATCTCCGAATGCCTAATTTACAGAA GGAGAAAGACCTTTGAATCTCTGAATGCCTAATTTACAGAA < 41bp 0.452912982375704 0.709609312564696 0.27357754 0.07016024 prediction 0.419218625129392 Functional Gain - NAB1 ENSG00000138386 CDS Human protein_coding chr2:191551946 chr2:191551947 stopgain 1.000 1 22 hm5C_associated_SNPs_124821 0 0 0 0 2 NAB1 chr2:191552043 5'GT 191552043 Upstream 97bp
chr19 48967469 48967469 1 + C T UCEC 48967468 + 48967448 48967488 41 CCCCAGAGGGTGAGTACATCCCGCTGGACCACCAGGATGTG CCCCAGAGGGTGAGTACATCCTGCTGGACCACCAGGATGTG < 41bp 0.459972413376763 0.709607946192108 0.33597803 0.1637043 prediction 0.419215892384216 Functional Gain - KCNJ14 ENSG00000182324 CDS Human protein_coding chr19:48967468 chr19:48967469 nonsynonymous SNV 0.896 4 22 hm5C_associated_SNPs_124822 0 0 1 0 1 KCNJ14 chr19:48967438 3'AG 48967438 Downstream 32bp
chr19 50474960 50474960 1 + C G ACC 50474956 + 50474936 50474976 41 ACCTGAGAGTGATGGTTTCCCAAGCAAACAGGACAGGTAGG ACCTGAGAGTGATGGTTTCCCAAGGAAACAGGACAGGTAGG < 41bp 0.41330855642472 0.709606113950546 0.09388846 0.38288045 prediction 0.419212227901091 Functional Gain - SIGLEC16 ENSG00000161643 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:50474956 chr19:50474960 . . 0 25 hm5C_associated_SNPs_124824 0 0 0 0 2 SIGLEC16 chr19:50474924 3'AG 50474924 Downstream 37bp
chr19 50474960 50474960 1 + C G ACC 50474956 + 50474936 50474976 41 ACCTGAGAGTGATGGTTTCCCAAGCAAACAGGACAGGTAGG ACCTGAGAGTGATGGTTTCCCAAGGAAACAGGACAGGTAGG < 41bp 0.41330855642472 0.709606113950546 0.09388846 0.38288045 prediction 0.419212227901091 Functional Gain - SIGLEC16 ENSG00000161643 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:50474956 chr19:50474960 . . 0 25 hm5C_associated_SNPs_124824 0 0 0 0 2 SIGLEC16 chr19:50474971 5'GT 50474971 Upstream 12bp
chr3 9788926 9788926 1 + C A UCEC 9788925 + 9788905 9788945 41 AAGGAGAAGATGCTGGAGGGCCGCAAGTCCAACATCCGCAA AAGGAGAAGATGCTGGAGGGCAGCAAGTCCAACATCCGCAA < 41bp 0.458336268170165 0.709603411233455 0.16612706 0.22265425 prediction 0.41920682246691 Functional Gain - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9788925 chr3:9788926 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_124825 0 0 0 0 1 BRPF1 chr3:9788850 3'AG 9788850 Downstream 77bp
chrX 128880265 128880265 1 + T A LUAD 128880261 + 128880241 128880281 41 GCTGTCTGGACCGACAGTCGCTACTGGACTCAGGCTGAGCG GCTGTCTGGACCGACAGTCGCTACAGGACTCAGGCTGAGCG < 41bp 0.354568506853505 0.709593890300473 0.047565967 0.8830199 prediction 0.419187780600947 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128880261 chrX:128880265 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_124829 0 0 0 0 2 XPNPEP2 chrX:128880212 3'AG 128880212 Downstream 54bp
chrX 128880265 128880265 1 + T A LUAD 128880261 + 128880241 128880281 41 GCTGTCTGGACCGACAGTCGCTACTGGACTCAGGCTGAGCG GCTGTCTGGACCGACAGTCGCTACAGGACTCAGGCTGAGCG < 41bp 0.354568506853505 0.709593890300473 0.047565967 0.8830199 prediction 0.419187780600947 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128880261 chrX:128880265 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_124829 0 0 0 0 2 XPNPEP2 chrX:128880316 5'GT 128880316 Upstream 52bp
chr6 18427879 18427879 1 + T C COAD 18427877 + 18427857 18427897 41 TCTCCCATCACTTGCCCTGACATGGTGTGCCTAAACCACGG TCTCCCATCACTTGCCCTGACACGGTGTGCCTAAACCACGG < 41bp 0.654102994940263 0.863688875118949 0.28825665 0.26953116 prediction 0.419171760357371 Functional Gain - RNF144B ENSG00000137393 CDS Human protein_coding chr6:18427877 chr6:18427879 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_124835 0 0 0 0 2 RNF144B chr6:18427812 3'AG 18427812 Downstream 68bp
chr6 18427879 18427879 1 + T C COAD 18427877 + 18427857 18427897 41 TCTCCCATCACTTGCCCTGACATGGTGTGCCTAAACCACGG TCTCCCATCACTTGCCCTGACACGGTGTGCCTAAACCACGG < 41bp 0.654102994940263 0.863688875118949 0.28825665 0.26953116 prediction 0.419171760357371 Functional Gain - RNF144B ENSG00000137393 CDS Human protein_coding chr6:18427877 chr6:18427879 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_124835 0 0 0 0 2 RNF144B chr6:18427916 5'GT 18427916 Upstream 38bp
chr2 113943326 113943326 1 + C G rs188416937 113943325 + 113943305 113943345 41 CAAGTGGGAGAGGTCACTGCCCGAGGGAGGACAGGGCATGC CAAGTGGGAGAGGTCACTGCCGGAGGGAGGACAGGGCATGC < 41bp 0.524918078744165 0.734503946917444 0.66769654 0.9125879 prediction 0.419171736346558 Functional Gain - PSD4 ENSG00000125637 UTR3 Human protein_coding chr2:113943325 chr2:113943326 . . 0 22 hm5C_associated_SNPs_124836 0 0 1 0 1 PSD4 chr2:113943239 3'AG 113943239 Downstream 88bp
chr10 118385511 118385511 1 + C T STAD 118385510 + 118385490 118385530 41 GCTTCAAACTTCCAACTGGACCGCAAGACACGCTTCATCAT GCTTCAAACTTCCAACTGGACTGCAAGACACGCTTCATCAT < 41bp 0.534355812874287 0.743940583934892 0.022452831 0.011769056 prediction 0.419169542121212 Functional Gain - PNLIPRP2 ENSG00000165862 CDS Human other chr10:118385510 chr10:118385511 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_124837 0 0 0 2 2 PNLIPRP2 chr10:118385457 3'AG 118385457 Downstream 55bp
chr10 118385511 118385511 1 + C T STAD 118385510 + 118385490 118385530 41 GCTTCAAACTTCCAACTGGACCGCAAGACACGCTTCATCAT GCTTCAAACTTCCAACTGGACTGCAAGACACGCTTCATCAT < 41bp 0.534355812874287 0.743940583934892 0.022452831 0.011769056 prediction 0.419169542121212 Functional Gain - PNLIPRP2 ENSG00000165862 CDS Human other chr10:118385510 chr10:118385511 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_124837 0 0 0 2 2 PNLIPRP2 chr10:118385582 5'GT 118385582 Upstream 72bp
chr1 40535443 40535443 1 + C T UCEC 40535442 + 40535422 40535462 41 GTGGTCCAGTACGCAGTGGCCCCAAACCATTCTCTGCACCT GTGGTCCAGTACGCAGTGGCCTCAAACCATTCTCTGCACCT < 41bp 0.441920949057925 0.709584298969804 0.32164806 0.27528906 prediction 0.419168597939607 Functional Gain - CAP1 ENSG00000131236 CDS Human protein_coding chr1:40535442 chr1:40535443 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_124838 0 0 1 0 1 CAP1 chr1:40535362 3'AG 40535362 Downstream 82bp
chr6 393303 393303 1 + C T UCEC 393302 + 393282 393322 41 AACGAGGAGAAGAGCATCTTCCGCATCCCCTGGAAGCACGC AACGAGGAGAAGAGCATCTTCTGCATCCCCTGGAAGCACGC < 41bp 0.617268872806495 0.826852166522315 0.18576297 0.35817516 prediction 0.419166587431639 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:393302 chr6:393303 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_124839 0 0 0 0 1 IRF4 chr6:393368 5'GT 393368 Upstream 66bp
chr7 139225155 139225155 1 + C G rs374050643 139225154 + 139225134 139225174 41 CTACTTCTTTTCCGAGGAACCCAGAGACTGGAACACAGGCA CTACTTCTTTTCCGAGGAACCGAGAGACTGGAACACAGGCA < 41bp 0.686499882864732 0.896081658846785 0.8844384 0.9239474 prediction 0.419163551964107 Functional Gain - CLEC2L ENSG00000236279 CDS Human protein_coding chr7:139225154 chr7:139225155 synonymous SNV . 0 22 hm5C_associated_SNPs_124840 0 0 0 0 2 CLEC2L chr7:139225067 3'AG 139225067 Downstream 89bp
chr7 139225155 139225155 1 + C G rs374050643 139225154 + 139225134 139225174 41 CTACTTCTTTTCCGAGGAACCCAGAGACTGGAACACAGGCA CTACTTCTTTTCCGAGGAACCGAGAGACTGGAACACAGGCA < 41bp 0.686499882864732 0.896081658846785 0.8844384 0.9239474 prediction 0.419163551964107 Functional Gain - CLEC2L ENSG00000236279 CDS Human protein_coding chr7:139225154 chr7:139225155 synonymous SNV . 0 22 hm5C_associated_SNPs_124840 0 0 0 0 2 CLEC2L chr7:139225233 5'GT 139225233 Upstream 79bp
chr19 20296859 20296859 1 + T C UCEC 20296856 + 20296836 20296876 41 GCAAGGAATAAAACCTCTGACTATGAAGAGACATGAGATGA GCAAGGAATAAAACCTCTGACTACGAAGAGACATGAGATGA < 41bp 0.492346780951173 0.7095808736342 0.26267847 0.20583808 prediction 0.4191617472684 Functional Gain - ZNF486 ENSG00000256229 CDS Human protein_coding chr19:20296856 chr19:20296859 nonsynonymous SNV 0.009 1 24 hm5C_associated_SNPs_124841 0 0 0 0 2 ZNF486 chr19:20296796 3'AG 20296796 Downstream 64bp
chr19 20296859 20296859 1 + T C UCEC 20296856 + 20296836 20296876 41 GCAAGGAATAAAACCTCTGACTATGAAGAGACATGAGATGA GCAAGGAATAAAACCTCTGACTACGAAGAGACATGAGATGA < 41bp 0.492346780951173 0.7095808736342 0.26267847 0.20583808 prediction 0.4191617472684 Functional Gain - ZNF486 ENSG00000256229 CDS Human protein_coding chr19:20296856 chr19:20296859 nonsynonymous SNV 0.009 1 24 hm5C_associated_SNPs_124841 0 0 0 0 2 ZNF486 chr19:20296891 5'GT 20296891 Upstream 33bp
chr1 32653693 32653693 1 + C A SKCM 32653692 + 32653672 32653712 41 AGCAAGCTTGAGAGCCTATGCCGTGAGCTGCAGCGGCACAA AGCAAGCTTGAGAGCCTATGCAGTGAGCTGCAGCGGCACAA < 41bp 0.446968149269753 0.709577875764748 0.50857353 0.521363 prediction 0.419155751529497 Functional Gain - TXLNA ENSG00000084652 CDS Human protein_coding chr1:32653692 chr1:32653693 nonsynonymous SNV 0.987 4 22 hm5C_associated_SNPs_124842 0 0 1 0 1 TXLNA chr1:32653725 5'GT 32653725 Upstream 33bp
chr9 139250965 139250965 1 + C T COAD 139250964 + 139250944 139250984 41 GCCACGGCGAGCCCCAGGAGCCGGGGGACGACTTCTTCAAC GCCACGGCGAGCCCCAGGAGCTGGGGGACGACTTCTTCAAC < 41bp 0.597987696605426 0.807563865338637 0.9218561 0.5731964 prediction 0.419152337466421 Functional Gain - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139250964 chr9:139250965 nonsynonymous SNV 0.627 5 22 hm5C_associated_SNPs_124843 0 0 0 0 1 GPSM1 chr9:139251002 5'GT 139251002 Upstream 38bp
chr20 61297886 61297886 1 + C A rs75880235 61297885 + 61297865 61297905 41 CGTCTTCTCACTGCACTGCCCCAGTGTGCCCATGGCGGGCG CGTCTTCTCACTGCACTGCCCAAGTGTGCCCATGGCGGGCG < 41bp 0.436141176132345 0.709570709464481 0.08520946 0.405035 prediction 0.419141418928962 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61297885 chr20:61297886 synonymous SNV . 0 22 hm5C_associated_SNPs_124844 0 0 0 0 1 SLCO4A1 chr20:61297927 5'GT 61297927 Upstream 42bp
chr7 106826848 106826848 1 + C G SKCM 106826844 + 106826824 106826864 41 TCTGGCATTTTCTGCATGTCCTCCCTGTCAGATGATGATGA TCTGGCATTTTCTGCATGTCCTCCGTGTCAGATGATGATGA < 41bp 0.433107189423086 0.709565650342336 0.021884441 0.030061275 prediction 0.419131300684672 Functional Gain - HBP1 ENSG00000105856 CDS Human protein_coding chr7:106826844 chr7:106826848 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_124846 0 0 0 0 2 HBP1 chr7:106826806 3'AG 106826806 Downstream 43bp
chr7 106826848 106826848 1 + C G SKCM 106826844 + 106826824 106826864 41 TCTGGCATTTTCTGCATGTCCTCCCTGTCAGATGATGATGA TCTGGCATTTTCTGCATGTCCTCCGTGTCAGATGATGATGA < 41bp 0.433107189423086 0.709565650342336 0.021884441 0.030061275 prediction 0.419131300684672 Functional Gain - HBP1 ENSG00000105856 CDS Human protein_coding chr7:106826844 chr7:106826848 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_124846 0 0 0 0 2 HBP1 chr7:106826917 5'GT 106826917 Upstream 70bp
chr19 5776250 5776250 1 + C A rs553233604 5776246 + 5776226 5776266 41 GTCCAGTATCAGATCTTGGGCGGCCGGACAGCAAACCAGAT GTCCAGTATCAGATCTTGGGCGGCAGGACAGCAAACCAGAT < 41bp 0.293746782550876 0.709563080816985 0.43589044 0.4753398 prediction 0.419126161633971 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5776246 chr19:5776250 synonymous SNV . 0 25 hm5C_associated_SNPs_124847 0 0 0 0 2 CATSPERD chr19:5776172 3'AG 5776172 Downstream 79bp
chr19 5776250 5776250 1 + C A rs553233604 5776246 + 5776226 5776266 41 GTCCAGTATCAGATCTTGGGCGGCCGGACAGCAAACCAGAT GTCCAGTATCAGATCTTGGGCGGCAGGACAGCAAACCAGAT < 41bp 0.293746782550876 0.709563080816985 0.43589044 0.4753398 prediction 0.419126161633971 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5776246 chr19:5776250 synonymous SNV . 0 25 hm5C_associated_SNPs_124847 0 0 0 0 2 CATSPERD chr19:5776326 5'GT 5776326 Upstream 77bp
chr1 25643553 25643553 1 + T C rs61740966 25643551 + 25643531 25643571 41 TTGGCCATCGTGATAGCTCTCATGTCTGGTCTCCTGACAGG TTGGCCATCGTGATAGCTCTCACGTCTGGTCTCCTGACAGG < 41bp 0.455444663958347 0.709552962287676 0.17143804 0.092654645 prediction 0.419105924575352 Functional Gain - RHD ENSG00000187010 CDS Human protein_coding chr1:25643551 chr1:25643553 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_124849 0 0 0 0 2 RHD chr1:25643491 3'AG 25643491 Downstream 63bp
chr1 25643553 25643553 1 + T C rs61740966 25643551 + 25643531 25643571 41 TTGGCCATCGTGATAGCTCTCATGTCTGGTCTCCTGACAGG TTGGCCATCGTGATAGCTCTCACGTCTGGTCTCCTGACAGG < 41bp 0.455444663958347 0.709552962287676 0.17143804 0.092654645 prediction 0.419105924575352 Functional Gain - RHD ENSG00000187010 CDS Human protein_coding chr1:25643551 chr1:25643553 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_124849 0 0 0 0 2 RHD chr1:25643570 5'GT 25643570 Upstream 18bp
chr11 63993819 63993819 1 + C G rs112856902 63993818 + 63993798 63993838 41 CGGGCCCTGGAAAGGGGTCCCCGCGCGCCCCGGGTCGGAGG CGGGCCCTGGAAAGGGGTCCCGGCGCGCCCCGGGTCGGAGG < 41bp 0.651104724138982 0.860652449842942 0.14792585 0.31975394 prediction 0.419095451407921 Functional Gain - NUDT22 ENSG00000149761 UTR5 Human protein_coding chr11:63993818 chr11:63993819 . . 0 22 hm5C_associated_SNPs_124852 0 0 1 0 1 NUDT22 chr11:63993899 5'GT 63993899 Upstream 81bp
chr8 58196793 58196793 1 + C A UCEC 58196789 + 58196769 58196809 41 TTTCTGGTGCACAGAAAATGCCAGCTTAACATCTGTGACAG TTTCTGGTGCACAGAAAATGCCAGATTAACATCTGTGACAG < 41bp 0.333978455386189 0.709545007297232 0.13753888 0.28436244 prediction 0.419090014594464 Functional Gain - LINC00588 ENSG00000215117 ncRNA_exonic Human lincRNA chr8:58196789 chr8:58196793 . . 0 25 hm5C_associated_SNPs_124853 0 0 0 0 2 LINC00588 chr8:58196720 3'AG 58196720 Downstream 74bp
chr8 58196793 58196793 1 + C A UCEC 58196789 + 58196769 58196809 41 TTTCTGGTGCACAGAAAATGCCAGCTTAACATCTGTGACAG TTTCTGGTGCACAGAAAATGCCAGATTAACATCTGTGACAG < 41bp 0.333978455386189 0.709545007297232 0.13753888 0.28436244 prediction 0.419090014594464 Functional Gain - LINC00588 ENSG00000215117 ncRNA_exonic Human lincRNA chr8:58196789 chr8:58196793 . . 0 25 hm5C_associated_SNPs_124853 0 0 0 0 2 LINC00588 chr8:58196834 5'GT 58196834 Upstream 42bp
chr21 17443631 17443631 1 + C T SKCM 17443630 + 17443610 17443650 41 AGTATCTGGTTCAACCGCTGCCCGAGCAGGCAGGCACCAGA AGTATCTGGTTCAACCGCTGCTCGAGCAGGCAGGCACCAGA < 41bp 0.516428050396875 0.725971870366926 0.032878608 0.08164382 prediction 0.419087639940102 Functional Gain - MIR99AHG ENSG00000215386 ncRNA_exonic Human lincRNA chr21:17443630 chr21:17443631 . . 0 22 hm5C_associated_SNPs_124854 0 0 0 0 1 MIR99AHG chr21:17443718 5'GT 17443718 Upstream 88bp
chr2 239229372 239229372 1 + C A rs13398676 239229371 + 239229351 239229391 41 GATTCGGAGGCCGCCGCTGACCGAGAAGCTGCTGAGCAAGC GATTCGGAGGCCGCCGCTGACAGAGAAGCTGCTGAGCAAGC < 41bp 0.616313089513859 0.825853662001141 0.67434293 0.90118957 prediction 0.419081144974564 Functional Gain - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239229371 chr2:239229372 synonymous SNV . 0 22 hm5C_associated_SNPs_124858 0 0 1 0 1 TRAF3IP1 chr2:239229426 5'GT 239229426 Upstream 55bp
chr11 71931995 71931995 1 + T G STAD 71931991 + 71931971 71932011 41 AAGGACACCTCCCGCCTGTACAACTTTAACTGGGACCACTG AAGGACACCTCCCGCCTGTACAACGTTAACTGGGACCACTG < 41bp 0.539910165262022 0.749446434501343 0.15320027 0.28957963 prediction 0.419072538478642 Functional Gain - FOLR2 ENSG00000165457 CDS Human protein_coding chr11:71931991 chr11:71931995 nonsynonymous SNV 0.702 4 25 hm5C_associated_SNPs_124860 0 0 0 0 1 FOLR2 chr11:71931914 3'AG 71931914 Downstream 82bp
chr16 334557 334557 1 + C T ACC 334556 + 334536 334576 41 TACCCTACGCTCAAGTTCTTCCGCAATGGGAACCGCACGCA TACCCTACGCTCAAGTTCTTCTGCAATGGGAACCGCACGCA < 41bp 0.629639761983154 0.839176027059077 0.20342726 0.19926366 prediction 0.419072530151845 Functional Gain - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:334556 chr16:334557 nonsynonymous SNV 0.506 3 22 hm5C_associated_SNPs_124861 0 0 0 0 1 PDIA2 chr16:334593 5'GT 334593 Upstream 37bp
chr11 22364835 22364835 1 + C T CESC 22364834 + 22364814 22364854 41 CCGGAAACCGTGGGGATGATCCACGGTTCCTTCTTTTGGGG CCGGAAACCGTGGGGATGATCTACGGTTCCTTCTTTTGGGG < 41bp 0.6159530421143 0.825484294602228 0.63520616 0.14777714 prediction 0.419062504975856 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22364834 chr11:22364835 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_124866 0 0 0 0 2 SLC17A6 chr11:22364793 3'AG 22364793 Downstream 43bp
chr11 22364835 22364835 1 + C T CESC 22364834 + 22364814 22364854 41 CCGGAAACCGTGGGGATGATCCACGGTTCCTTCTTTTGGGG CCGGAAACCGTGGGGATGATCTACGGTTCCTTCTTTTGGGG < 41bp 0.6159530421143 0.825484294602228 0.63520616 0.14777714 prediction 0.419062504975856 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22364834 chr11:22364835 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_124866 0 0 0 0 2 SLC17A6 chr11:22364911 5'GT 22364911 Upstream 77bp
chr4 79531254 79531254 1 + T C LGG 79531251 + 79531231 79531271 41 GAAATCACACTCTTAAAAATCTGTGGTGGAGATGACTGAAC GAAATCACACTCTTAAAAATCTGCGGTGGAGATGACTGAAC < 41bp 0.52971913426149 0.739244261579767 0.6135496 0.66373515 prediction 0.419050254636554 Functional Gain - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79531251 chr4:79531254 synonymous SNV . 0 24 hm5C_associated_SNPs_124869 0 0 0 0 1 ANXA3 chr4:79531210 3'AG 79531210 Downstream 45bp
chr9 75777732 75777732 1 + A G HNSC 75777729 + 75777709 75777749 41 GATCTGGCCAAAGACATAACCTCAGACACATCTGGAGATTT GATCTGGCCAAAGACATAACCTCGGACACATCTGGAGATTT < 41bp 0.479819774238797 0.709523245214131 0.22098479 0.35559696 prediction 0.419046490428262 Functional Gain - ANXA1 ENSG00000135046 CDS Human protein_coding chr9:75777729 chr9:75777732 synonymous SNV . 0 24 hm5C_associated_SNPs_124872 0 0 1 0 2 ANXA1 chr9:75777698 3'AG 75777698 Downstream 35bp
chr9 75777732 75777732 1 + A G HNSC 75777729 + 75777709 75777749 41 GATCTGGCCAAAGACATAACCTCAGACACATCTGGAGATTT GATCTGGCCAAAGACATAACCTCGGACACATCTGGAGATTT < 41bp 0.479819774238797 0.709523245214131 0.22098479 0.35559696 prediction 0.419046490428262 Functional Gain - ANXA1 ENSG00000135046 CDS Human protein_coding chr9:75777729 chr9:75777732 synonymous SNV . 0 24 hm5C_associated_SNPs_124872 0 0 1 0 2 ANXA1 chr9:75777777 5'GT 75777777 Upstream 46bp
chr2 27278039 27278039 1 + C T UCEC 27278038 + 27278018 27278058 41 ATCCTCCGACCTGATGATCCCCGGGCCCAAACCCTCCGTCG ATCCTCCGACCTGATGATCCCTGGGCCCAAACCCTCCGTCG < 41bp 0.578594535712678 0.78811667067497 0.9230517 0.8154327 prediction 0.419044269924584 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27278038 chr2:27278039 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_124873 1 0 1 0 2 AGBL5 chr2:27277943 3'AG 27277943 Downstream 97bp
chr2 27278039 27278039 1 + C T UCEC 27278038 + 27278018 27278058 41 ATCCTCCGACCTGATGATCCCCGGGCCCAAACCCTCCGTCG ATCCTCCGACCTGATGATCCCTGGGCCCAAACCCTCCGTCG < 41bp 0.578594535712678 0.78811667067497 0.9230517 0.8154327 prediction 0.419044269924584 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27278038 chr2:27278039 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_124873 1 0 1 0 2 AGBL5 chr2:27278121 5'GT 27278121 Upstream 83bp
chr22 41913629 41913629 1 + C G BLCA 41913628 + 41913608 41913648 41 AAGTACCTGAGCAAGACCGGCCGGGAAGGTGAGCTGGCAGG AAGTACCTGAGCAAGACCGGCGGGGAAGGTGAGCTGGCAGG < 41bp 0.382284035083345 0.709518908808516 0.6333877 0.9098917 prediction 0.419037817617032 Functional Gain - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41913628 chr22:41913629 nonsynonymous SNV 0.821 4 22 hm5C_associated_SNPs_124874 0 0 1 0 2 ACO2 chr22:41913531 3'AG 41913531 Downstream 99bp
chr22 41913629 41913629 1 + C G BLCA 41913628 + 41913608 41913648 41 AAGTACCTGAGCAAGACCGGCCGGGAAGGTGAGCTGGCAGG AAGTACCTGAGCAAGACCGGCGGGGAAGGTGAGCTGGCAGG < 41bp 0.382284035083345 0.709518908808516 0.6333877 0.9098917 prediction 0.419037817617032 Functional Gain - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41913628 chr22:41913629 nonsynonymous SNV 0.821 4 22 hm5C_associated_SNPs_124874 0 0 1 0 2 ACO2 chr22:41913635 5'GT 41913635 Upstream 7bp
chr17 45009562 45009562 1 + T C UCEC 45009559 + 45009539 45009579 41 CTTCTGTCTCGAACCTTCACCACTAACGTAAGCCAGGCCCG CTTCTGTCTCGAACCTTCACCACCAACGTAAGCCAGGCCCG < 41bp 0.566799610002522 0.776317473203964 0.3679713 0.354075 prediction 0.419035726402883 Functional Gain - GOSR2 ENSG00000108433;ENSG00000262633 CDS Human other chr17:45009559 chr17:45009562 synonymous SNV . 0 24 hm5C_associated_SNPs_124875 0 0 1 0 1 GOSR2 chr17:45009565 5'GT 45009565 Upstream 4bp
chr15 97326891 97326891 1 + C A LUAD 97326890 + 97326870 97326910 41 AGGAAGGGCATGAGGAATGGCCCCGGCTGGGATGTCAGGGG AGGAAGGGCATGAGGAATGGCACCGGCTGGGATGTCAGGGG < 41bp 0.600327936120518 0.809843977363643 0.23539945 0.20302594 prediction 0.41903208248625 Functional Gain - SPATA8 ENSG00000185594 CDS Human protein_coding chr15:97326890 chr15:97326891 synonymous SNV . 0 22 hm5C_associated_SNPs_124877 0 0 0 0 1 SPATA8;SPATA8 chr15:97326974 5'GT 97326974 Upstream 84bp
chr12 2921981 2921981 1 + T G STAD 2921978 + 2921958 2921998 41 CGCTGGAGTTCAGCGGGAGCCTCTTCCCGCACGCAATCTGC CGCTGGAGTTCAGCGGGAGCCTCGTCCCGCACGCAATCTGC < 41bp 0.325804882436182 0.709499405757998 0.2856704 0.43568268 prediction 0.418998811515996 Functional Gain - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2921978 chr12:2921981 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_124886 0 0 1 0 1 ITFG2 chr12:2922022 5'GT 2922022 Upstream 42bp
chr17 48557348 48557348 1 + T C rs2290861 48557346 + 48557326 48557366 41 GCAGCCCACCTGCCTGCAGACTTGGAAGTCACATTGGAGGC GCAGCCCACCTGCCTGCAGACTCGGAAGTCACATTGGAGGC < 41bp 0.6513856159831 0.860884357978047 0.061791033 0.08954796 prediction 0.418997483989895 Functional Gain - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48557346 chr17:48557348 nonsynonymous SNV 0.983 0 23 hm5C_associated_SNPs_124888 0 0 1 0 1 RSAD1 chr17:48557445 5'GT 48557445 Upstream 98bp
chr18 21646038 21646038 1 + A G rs151171824 21646035 + 21646015 21646055 41 GCATGTGATGACTTAAAAACCACAGAAAAACTGTGTGAAAG GCATGTGATGACTTAAAAACCACGGAAAAACTGTGTGAAAG < 41bp 0.485669703278438 0.709490279250685 0.5538091 0.52448004 prediction 0.418980558501371 Functional Gain - TTC39C ENSG00000168234 CDS Human protein_coding chr18:21646035 chr18:21646038 synonymous SNV . 0 24 hm5C_associated_SNPs_124890 0 0 1 0 2 TTC39C chr18:21645976 3'AG 21645976 Downstream 63bp
chr18 21646038 21646038 1 + A G rs151171824 21646035 + 21646015 21646055 41 GCATGTGATGACTTAAAAACCACAGAAAAACTGTGTGAAAG GCATGTGATGACTTAAAAACCACGGAAAAACTGTGTGAAAG < 41bp 0.485669703278438 0.709490279250685 0.5538091 0.52448004 prediction 0.418980558501371 Functional Gain - TTC39C ENSG00000168234 CDS Human protein_coding chr18:21646035 chr18:21646038 synonymous SNV . 0 24 hm5C_associated_SNPs_124890 0 0 1 0 2 TTC39C chr18:21646104 5'GT 21646104 Upstream 67bp
chr15 57565459 57565459 1 + A G COAD 57565456 + 57565436 57565476 41 CTTAGTCTAGAACAGCAAGTCAGAGGTAAGTAGGTTCAGCC CTTAGTCTAGAACAGCAAGTCAGGGGTAAGTAGGTTCAGCC < 41bp 0.513904811336783 0.723394699734776 0.8184246 0.90756 prediction 0.418979776795984 Functional Gain - TCF12 ENSG00000140262 CDS Human protein_coding chr15:57565456 chr15:57565459 synonymous SNV . 0 24 hm5C_associated_SNPs_124891 0 0 1 0 1 TCF12 chr15:57565460 5'GT 57565460 Upstream 2bp
chr1 207307914 207307914 1 + C T LGG 207307913 + 207307893 207307933 41 AAGGAGATGGCACGTGGAGTCCCCGAACACCATCATGTGGA AAGGAGATGGCACGTGGAGTCTCCGAACACCATCATGTGGA < 41bp 0.460885152371433 0.709488546446733 0.13925493 0.38467956 prediction 0.418977092893467 Functional Gain - C4BPA ENSG00000123838 CDS Human protein_coding chr1:207307913 chr1:207307914 nonsynonymous SNV 0.018 4 22 hm5C_associated_SNPs_124892 0 0 1 0 1 C4BPA chr1:207307937 5'GT 207307937 Upstream 24bp
chr20 48884124 48884124 1 + C A rs6125961 48884120 + 48884100 48884140 41 TCTGGCACCCAATTTAGGACCCCGCGGGGAGGCCCAAGCCC TCTGGCACCCAATTTAGGACCCCGAGGGGAGGCCCAAGCCC < 41bp 0.346372694161458 0.709487774862517 0.091584116 0.26742285 prediction 0.418975549725034 Functional Gain - SMIM25 ENSG00000224397 ncRNA_exonic Human lincRNA chr20:48884120 chr20:48884124 . . 0 25 hm5C_associated_SNPs_124893 0 1 0 0 1 SMIM25 chr20:48884200 5'GT 48884200 Upstream 77bp
chr19 41594537 41594537 1 + T A STAD 41594533 + 41594513 41594553 41 ACCTGCAGCTGAACACAGAGCAGATGTACAACTCCCTCATG ACCTGCAGCTGAACACAGAGCAGAAGTACAACTCCCTCATG < 41bp 0.671560385165636 0.881033632337729 0.86156857 0.8716283 prediction 0.418946494344187 Functional Gain - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41594533 chr19:41594537 nonsynonymous SNV 0.127 1 25 hm5C_associated_SNPs_124896 0 0 0 0 1 CYP2A13 chr19:41594556 5'GT 41594556 Upstream 20bp
chr1 116670241 116670241 1 + C T SKCM 116670240 + 116670220 116670260 41 ATGTCTGCAGCGCTGGCCTTCCCAAGAGAGAGTGGAGTGCA ATGTCTGCAGCGCTGGCCTTCTCAAGAGAGAGTGGAGTGCA < 41bp 0.637453213602109 0.846921186168418 0.25374588 0.2620654 prediction 0.418935945132618 Functional Gain - MAB21L3 ENSG00000173212 CDS Human protein_coding chr1:116670240 chr1:116670241 synonymous SNV . 0 22 hm5C_associated_SNPs_124897 0 0 0 0 1 MAB21L3 chr1:116670265 5'GT 116670265 Upstream 25bp
chr9 114409459 114409459 1 + T C COAD 114409456 + 114409436 114409476 41 AGTACTACAGCCATTACTACCACTACTATAGCAGGCGCTTG AGTACTACAGCCATTACTACCACCACTATAGCAGGCGCTTG < 41bp 0.536491895027117 0.745955802349356 0.13220456 0.092968285 prediction 0.418927814644477 Functional Gain - DNAJC25 ENSG00000059769 CDS Human protein_coding chr9:114409456 chr9:114409459 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_124898 0 0 1 0 2 DNAJC25 chr9:114409387 3'AG 114409387 Downstream 73bp
chr9 114409459 114409459 1 + T C COAD 114409456 + 114409436 114409476 41 AGTACTACAGCCATTACTACCACTACTATAGCAGGCGCTTG AGTACTACAGCCATTACTACCACCACTATAGCAGGCGCTTG < 41bp 0.536491895027117 0.745955802349356 0.13220456 0.092968285 prediction 0.418927814644477 Functional Gain - DNAJC25 ENSG00000059769 CDS Human protein_coding chr9:114409456 chr9:114409459 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_124898 0 0 1 0 2 DNAJC25 chr9:114409539 5'GT 114409539 Upstream 81bp
chr12 121592689 121592689 1 + T C rs17525809 121592687 + 121592667 121592707 41 GCAGAGGTGAAAGAGGAGATCGTGGAGAATGGAGTGAAGAA GCAGAGGTGAAAGAGGAGATCGCGGAGAATGGAGTGAAGAA < 41bp 0.533662180772794 0.74312137116861 0.81322575 0.86071885 prediction 0.418918380791632 Functional Gain - P2RX7 ENSG00000089041 CDS Human protein_coding chr12:121592687 chr12:121592689 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_124900 0 0 0 1 1 P2RX7 chr12:121592756 5'GT 121592756 Upstream 68bp
chr17 77705076 77705076 1 + C T LUSC 77705075 + 77705055 77705095 41 CCCAACCTGGACGCCATGGCCCGAGACGGGGTGAAGGCACG CCCAACCTGGACGCCATGGCCTGAGACGGGGTGAAGGCACG < 41bp 0.486284995099449 0.709454245566236 0.11426219 0.18803954 prediction 0.418908491132472 Functional Gain - ENPP7 ENSG00000182156 CDS Human protein_coding chr17:77705075 chr17:77705076 stopgain 0.032 0 22 hm5C_associated_SNPs_124901 0 0 0 0 1 ENPP7 chr17:77705154 5'GT 77705154 Upstream 79bp
chr3 101576293 101576293 1 + T C UCEC 101576290 + 101576270 101576310 41 GCATTTGGTTCCCGATGGCCCTGTGGGAGAACAGGTGAGAG GCATTTGGTTCCCGATGGCCCTGCGGGAGAACAGGTGAGAG < 41bp 0.480127786292769 0.709447424472886 0.19615474 0.38182205 prediction 0.418894848945772 Functional Gain - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101576290 chr3:101576293 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_124903 0 0 1 0 1 NFKBIZ chr3:101576303 5'GT 101576303 Upstream 11bp
chr19 14512267 14512267 1 + C T SKCM 14512266 + 14512246 14512286 41 GAGGCCCTGGCGCCACCTGTCCGGCACCTCATAGCCACCCA GAGGCCCTGGCGCCACCTGTCTGGCACCTCATAGCCACCCA < 41bp 0.461072855340729 0.709445259478157 0.28041723 0.1573219 prediction 0.418890518956314 Functional Gain - ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14512266 chr19:14512267 nonsynonymous SNV 0.001 3 22 hm5C_associated_SNPs_124906 0 0 1 0 1 ADGRE5 chr19:14512198 3'AG 14512198 Downstream 70bp
chr17 61908868 61908868 1 + C T SKCM 61908867 + 61908847 61908887 41 TTTTCCTTGCCATCTCCAGGCCCGGCTGGACATTTTGAAGA TTTTCCTTGCCATCTCCAGGCTCGGCTGGACATTTTGAAGA < 41bp 0.619191329647682 0.828632073683648 0.022008061 0.035903543 prediction 0.418881488071932 Functional Gain - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61908867 chr17:61908868 synonymous SNV . 0 22 hm5C_associated_SNPs_124909 0 0 1 0 1 PSMC5 chr17:61908866 3'AG 61908866 Downstream 3bp
chr19 10131982 10131982 1 + T C COAD 10131980 + 10131960 10132000 41 TCACCGAGTTTGAGGGGAAGCTTCTGGCGCAGGTTTCTATG TCACCGAGTTTGAGGGGAAGCTCCTGGCGCAGGTTTCTATG < 41bp 0.413814544001082 0.709438091842702 0.059099138 0.21184227 prediction 0.418876183685404 Functional Gain - RDH8 ENSG00000080511 CDS Human protein_coding chr19:10131980 chr19:10131982 synonymous SNV . 0 23 hm5C_associated_SNPs_124911 0 0 0 0 1 RDH8 chr19:10131931 3'AG 10131931 Downstream 52bp
chr7 123594537 123594537 1 + C T SARC 123594536 + 123594516 123594556 41 CTTCCGGTTTTTGCATATACCCGCATAGTTTTTACTGATCA CTTCCGGTTTTTGCATATACCTGCATAGTTTTTACTGATCA < 41bp 0.473128829675057 0.709436028235685 0.02497983 0.15867594 prediction 0.41887205647137 Functional Gain - SPAM1 ENSG00000106304 CDS Human protein_coding chr7:123594536 chr7:123594537 nonsynonymous SNV 0.013 4 22 hm5C_associated_SNPs_124914 0 0 0 0 1 SPAM1 chr7:123594578 5'GT 123594578 Upstream 42bp
chr19 30303458 30303458 1 + C G rs535522927 30303457 + 30303437 30303477 41 AGGCCTCAGGCCGGAGCAGCCCCATCATGCCGAGGGAGCGC AGGCCTCAGGCCGGAGCAGCCGCATCATGCCGAGGGAGCGC < 41bp 0.533536422460593 0.742970472328959 0.12617782 0.35270035 prediction 0.418868099736733 Functional Gain - CCNE1 ENSG00000105173 UTR5 Human protein_coding chr19:30303457 chr19:30303458 . . 0 22 hm5C_associated_SNPs_124915 0 0 0 0 2 CCNE1 chr19:30303439 3'AG 30303439 Downstream 20bp
chr19 30303458 30303458 1 + C G rs535522927 30303457 + 30303437 30303477 41 AGGCCTCAGGCCGGAGCAGCCCCATCATGCCGAGGGAGCGC AGGCCTCAGGCCGGAGCAGCCGCATCATGCCGAGGGAGCGC < 41bp 0.533536422460593 0.742970472328959 0.12617782 0.35270035 prediction 0.418868099736733 Functional Gain - CCNE1 ENSG00000105173 UTR5 Human protein_coding chr19:30303457 chr19:30303458 . . 0 22 hm5C_associated_SNPs_124915 0 0 0 0 2 CCNE1 chr19:30303485 5'GT 30303485 Upstream 28bp
chr5 161113343 161113343 1 + C T LGG 161113342 + 161113322 161113362 41 GCTATGACAATCGGCTGCGGCCGGGATTTGGAGGTAAGAAG GCTATGACAATCGGCTGCGGCTGGGATTTGGAGGTAAGAAG < 41bp 0.566624517048881 0.776054515453049 0.8062508 0.39638785 prediction 0.418859996808336 Functional Gain - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161113342 chr5:161113343 nonsynonymous SNV 0.891 5 22 hm5C_associated_SNPs_124918 0 0 0 0 1 GABRA6 chr5:161113354 5'GT 161113354 Upstream 12bp
chr20 61598071 61598071 1 + C T COAD 61598070 + 61598050 61598090 41 CACAGGTGTGGCCAACACAGCCGGGGCCTTGGCAGGTGAGG CACAGGTGTGGCCAACACAGCTGGGGCCTTGGCAGGTGAGG < 41bp 0.488052143190879 0.709429168287551 0.84398896 0.4429527 prediction 0.418858336575102 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61598070 chr20:61598071 synonymous SNV . 0 22 hm5C_associated_SNPs_124919 0 0 1 0 2 SLC17A9 chr20:61598055 3'AG 61598055 Downstream 17bp
chr20 61598071 61598071 1 + C T COAD 61598070 + 61598050 61598090 41 CACAGGTGTGGCCAACACAGCCGGGGCCTTGGCAGGTGAGG CACAGGTGTGGCCAACACAGCTGGGGCCTTGGCAGGTGAGG < 41bp 0.488052143190879 0.709429168287551 0.84398896 0.4429527 prediction 0.418858336575102 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61598070 chr20:61598071 synonymous SNV . 0 22 hm5C_associated_SNPs_124919 0 0 1 0 2 SLC17A9 chr20:61598084 5'GT 61598084 Upstream 14bp
chr5 145719161 145719161 1 + C A UCEC 145719160 + 145719140 145719180 41 TGAGAGCCTGCTGGCACGCGCCGAAGCTCTGGCGGCGGTGG TGAGAGCCTGCTGGCACGCGCAGAAGCTCTGGCGGCGGTGG < 41bp 0.630841509461201 0.840270511332993 0.22867674 0.7043447 prediction 0.418858003743584 Functional Gain - POU4F3 ENSG00000091010 CDS Human protein_coding chr5:145719160 chr5:145719161 synonymous SNV . 0 22 hm5C_associated_SNPs_124921 0 0 0 0 1 POU4F3 chr5:145719111 3'AG 145719111 Downstream 51bp
chr17 18144097 18144097 1 + C G rs57956221 18144096 + 18144076 18144116 41 CGGGCGTGGCCGCCCACTGCCCGAGCCCTACGAGGCCTCAC CGGGCGTGGCCGCCCACTGCCGGAGCCCTACGAGGCCTCAC < 41bp 0.384761612511139 0.70941729894041 0.4647843 0.9101286 prediction 0.418834597880819 Functional Gain - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18144096 chr17:18144097 synonymous SNV . 0 22 hm5C_associated_SNPs_124926 0 0 1 0 1 LLGL1 chr17:18144187 5'GT 18144187 Upstream 91bp
chr16 50583404 50583404 1 + C T KIRP 50583403 + 50583383 50583423 41 TGGATCGGGAGACAGCGCTGCCCGGGCGGTGTCTCGGGACC TGGATCGGGAGACAGCGCTGCTCGGGCGGTGTCTCGGGACC < 41bp 0.454127599236151 0.709415897159881 0.65159714 0.7576734 prediction 0.418831794319762 Functional Gain - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50583403 chr16:50583404 nonsynonymous SNV 0.674 0 22 hm5C_associated_SNPs_124929 0 0 1 0 2 NKD1 chr16:50583333 3'AG 50583333 Downstream 72bp
chr16 50583404 50583404 1 + C T KIRP 50583403 + 50583383 50583423 41 TGGATCGGGAGACAGCGCTGCCCGGGCGGTGTCTCGGGACC TGGATCGGGAGACAGCGCTGCTCGGGCGGTGTCTCGGGACC < 41bp 0.454127599236151 0.709415897159881 0.65159714 0.7576734 prediction 0.418831794319762 Functional Gain - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50583403 chr16:50583404 nonsynonymous SNV 0.674 0 22 hm5C_associated_SNPs_124929 0 0 1 0 2 NKD1 chr16:50583466 5'GT 50583466 Upstream 63bp
chr12 6421412 6421412 1 + C T SKCM 6421411 + 6421391 6421431 41 GGATGAAGGCCTTTGGTCCTCCACATGAGGGCCCCCTCCAA GGATGAAGGCCTTTGGTCCTCTACATGAGGGCCCCCTCCAA < 41bp 0.590248442085154 0.799656012916253 0.9201517 0.95168173 prediction 0.418815141662197 Functional Gain - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6421411 chr12:6421412 nonsynonymous SNV 0.070 1 22 hm5C_associated_SNPs_124935 0 0 1 0 1 PLEKHG6 chr12:6421325 3'AG 6421325 Downstream 88bp
chr5 68805133 68805133 1 + T C STAD 68805130 + 68805110 68805150 41 ATTCGGATCCTGTCTATGCTCATTATTGTGATGTGCATTGC ATTCGGATCCTGTCTATGCTCATCATTGTGATGTGCATTGC < 41bp 0.547442470438312 0.756840129137445 0.20074186 0.24610353 prediction 0.418795317398264 Functional Gain - OCLN ENSG00000197822 CDS Human protein_coding chr5:68805130 chr5:68805133 synonymous SNV . 0 24 hm5C_associated_SNPs_124940 0 0 1 0 1 OCLN chr5:68805215 5'GT 68805215 Upstream 83bp
chr17 18111594 18111594 1 + C T LUAD 18111593 + 18111573 18111613 41 TCGGTGCTGCTGCCCACACACCGGCGGAGGGGTAGCTTCAG TCGGTGCTGCTGCCCACACACTGGCGGAGGGGTAGCTTCAG < 41bp 0.593447599528803 0.802838125765445 0.8441355 0.65734863 prediction 0.418781052473284 Functional Gain - ALKBH5 ENSG00000091542 CDS Human protein_coding chr17:18111593 chr17:18111594 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_124942 0 0 1 0 1 ALKBH5 chr17:18111533 3'AG 18111533 Downstream 62bp
chrX 57473418 57473418 1 + T C LIHC 57473415 + 57473395 57473435 41 ATGGGAAACATGTCAGTCCTCTGTGGGAGTTGATCAAATGG ATGGGAAACATGTCAGTCCTCTGCGGGAGTTGATCAAATGG < 41bp 0.556236608551243 0.765620932103409 0.17375249 0.26915342 prediction 0.418768647104331 Functional Gain - FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57473415 chrX:57473418 nonsynonymous SNV 0.125 0 24 hm5C_associated_SNPs_124943 0 0 0 0 2 FAAH2 chrX:57473361 3'AG 57473361 Downstream 58bp
chrX 57473418 57473418 1 + T C LIHC 57473415 + 57473395 57473435 41 ATGGGAAACATGTCAGTCCTCTGTGGGAGTTGATCAAATGG ATGGGAAACATGTCAGTCCTCTGCGGGAGTTGATCAAATGG < 41bp 0.556236608551243 0.765620932103409 0.17375249 0.26915342 prediction 0.418768647104331 Functional Gain - FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57473415 chrX:57473418 nonsynonymous SNV 0.125 0 24 hm5C_associated_SNPs_124943 0 0 0 0 2 FAAH2 chrX:57473472 5'GT 57473472 Upstream 55bp
chr1 110168322 110168322 1 + T C CESC 110168319 + 110168299 110168339 41 TCACTGGCTGAGAGCGAGCTCCGTAGTGCCCCGTATGAGTT TCACTGGCTGAGAGCGAGCTCCGCAGTGCCCCGTATGAGTT < 41bp 0.526545768590853 0.735922490177476 0.22648492 0.2514861 prediction 0.418753443173247 Functional Gain - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110168319 chr1:110168322 synonymous SNV . 0 24 hm5C_associated_SNPs_124945 0 0 1 0 2 AMPD2 chr1:110168284 3'AG 110168284 Downstream 39bp
chr1 110168322 110168322 1 + T C CESC 110168319 + 110168299 110168339 41 TCACTGGCTGAGAGCGAGCTCCGTAGTGCCCCGTATGAGTT TCACTGGCTGAGAGCGAGCTCCGCAGTGCCCCGTATGAGTT < 41bp 0.526545768590853 0.735922490177476 0.22648492 0.2514861 prediction 0.418753443173247 Functional Gain - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110168319 chr1:110168322 synonymous SNV . 0 24 hm5C_associated_SNPs_124945 0 0 1 0 2 AMPD2 chr1:110168414 5'GT 110168414 Upstream 93bp
chr6 43099815 43099815 1 + C T LUSC 43099814 + 43099794 43099834 41 TCTCTGCTGCTGACCCAGGTCCGGCCACGCAATGCAGGGAT TCTCTGCTGCTGACCCAGGTCTGGCCACGCAATGCAGGGAT < 41bp 0.457233199366794 0.709375004829532 0.3194949 0.21699476 prediction 0.418750009659065 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43099814 chr6:43099815 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_124946 0 0 1 0 2 PTK7 chr6:43099754 3'AG 43099754 Downstream 62bp
chr6 43099815 43099815 1 + C T LUSC 43099814 + 43099794 43099834 41 TCTCTGCTGCTGACCCAGGTCCGGCCACGCAATGCAGGGAT TCTCTGCTGCTGACCCAGGTCTGGCCACGCAATGCAGGGAT < 41bp 0.457233199366794 0.709375004829532 0.3194949 0.21699476 prediction 0.418750009659065 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43099814 chr6:43099815 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_124946 0 0 1 0 2 PTK7 chr6:43099902 5'GT 43099902 Upstream 88bp
chr2 181846925 181846925 1 + T C SKCM 181846922 + 181846902 181846942 41 CAGAAGAAAAACACCAAACTCTCTAGCAAAACCACTGCTAA CAGAAGAAAAACACCAAACTCTCCAGCAAAACCACTGCTAA < 41bp 0.577512850844479 0.786885583125929 0.87386215 0.92998767 prediction 0.418745464562901 Functional Gain - UBE2E3 ENSG00000170035 CDS Human protein_coding chr2:181846922 chr2:181846925 synonymous SNV . 0 24 hm5C_associated_SNPs_124947 0 0 0 0 1 UBE2E3 chr2:181846963 5'GT 181846963 Upstream 39bp
chr4 37979052 37979052 1 + C G rs574894198 37979051 + 37979031 37979071 41 CCAAGCCCGCCCCCGGCCGCCCGCGGGCCCACGGGCCGGCG CCAAGCCCGCCCCCGGCCGCCGGCGGGCCCACGGGCCGGCG < 41bp 0.663910339813316 0.873282801737577 0.19957152 0.6992372 prediction 0.418744923848521 Functional Gain - TBC1D1 ENSG00000065882 UTR5 Human protein_coding chr4:37979051 chr4:37979052 . . 0 22 hm5C_associated_SNPs_124948 0 0 1 0 1 TBC1D1 chr4:37979150 5'GT 37979150 Upstream 99bp
chr19 42406950 42406950 1 + C T STAD 42406949 + 42406929 42406969 41 CGCAGGAAGCTGAGAGCCGCCCGCGGTGCCGCCGCCTGCAG CGCAGGAAGCTGAGAGCCGCCTGCGGTGCCGCCGCCTGCAG < 41bp 0.617681914142385 0.827053769802515 0.333271 0.32202494 prediction 0.41874371132026 Functional Gain - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42406949 chr19:42406950 nonsynonymous SNV 0.494 4 22 hm5C_associated_SNPs_124950 0 0 1 0 2 ARHGEF1 chr19:42406934 3'AG 42406934 Downstream 17bp
chr19 42406950 42406950 1 + C T STAD 42406949 + 42406929 42406969 41 CGCAGGAAGCTGAGAGCCGCCCGCGGTGCCGCCGCCTGCAG CGCAGGAAGCTGAGAGCCGCCTGCGGTGCCGCCGCCTGCAG < 41bp 0.617681914142385 0.827053769802515 0.333271 0.32202494 prediction 0.41874371132026 Functional Gain - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42406949 chr19:42406950 nonsynonymous SNV 0.494 4 22 hm5C_associated_SNPs_124950 0 0 1 0 2 ARHGEF1 chr19:42407048 5'GT 42407048 Upstream 99bp
chr1 153752369 153752369 1 + C G OV 153752368 + 153752348 153752388 41 TGGCAAATGAGGGCTTCGACCCCAGCACCCTGTCTGACCCA TGGCAAATGAGGGCTTCGACCGCAGCACCCTGTCTGACCCA < 41bp 0.383913290504976 0.709371691412555 0.27766758 0.8727279 prediction 0.41874338282511 Functional Gain - SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153752368 chr1:153752369 nonsynonymous SNV 0.252 4 22 hm5C_associated_SNPs_124951 0 0 1 1 1 SLC27A3 chr1:153752302 3'AG 153752302 Downstream 68bp
chr1 239792756 239792756 1 + C A rs543864198 239792752 + 239792732 239792772 41 TCAGATGGAAATGCAGAAATCACCCGTCTTCTGCGTCGCTC TCAGATGGAAATGCAGAAATCACCAGTCTTCTGCGTCGCTC < 41bp 0.380361996938846 0.70936891474038 0.24239862 0.31922618 prediction 0.41873782948076 Functional Gain - CHRM3 ENSG00000133019 UTR5 Human protein_coding chr1:239792752 chr1:239792756 . . 0 25 hm5C_associated_SNPs_124952 0 0 0 0 1 CHRM3 chr1:239792839 5'GT 239792839 Upstream 84bp
chr19 49514506 49514506 1 + C T LUSC 49514505 + 49514485 49514525 41 GAGAGCTTCTCCTTCCTCAACCGGGCCCTGGAGAGTGACAT GAGAGCTTCTCCTTCCTCAACTGGGCCCTGGAGAGTGACAT < 41bp 0.45103312979162 0.70934906761097 0.6138653 0.35536382 prediction 0.418698135221941 Functional Gain - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49514505 chr19:49514506 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_124958 0 0 1 0 2 RUVBL2 chr19:49514449 3'AG 49514449 Downstream 58bp
chr19 49514506 49514506 1 + C T LUSC 49514505 + 49514485 49514525 41 GAGAGCTTCTCCTTCCTCAACCGGGCCCTGGAGAGTGACAT GAGAGCTTCTCCTTCCTCAACTGGGCCCTGGAGAGTGACAT < 41bp 0.45103312979162 0.70934906761097 0.6138653 0.35536382 prediction 0.418698135221941 Functional Gain - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49514505 chr19:49514506 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_124958 0 0 1 0 2 RUVBL2 chr19:49514567 5'GT 49514567 Upstream 62bp
chr11 18624655 18624655 1 + A G rs7935601 18624652 + 18624632 18624672 41 CTTCGTGGGTACACCACCAGCTGAGAAAGAAGCCTCATGAT CTTCGTGGGTACACCACCAGCTGGGAAAGAAGCCTCATGAT < 41bp 0.560051129120536 0.769386695290255 0.7316956 0.72251993 prediction 0.41867113233944 Functional Gain - SPTY2D1-AS1 ENSG00000247595 ncRNA_exonic Human protein_coding chr11:18624652 chr11:18624655 . . 0 24 hm5C_associated_SNPs_124963 0 0 1 0 1 SPTY2D1-AS1 chr11:18624742 5'GT 18624742 Upstream 88bp
chr5 145849155 145849155 1 + A G GBM 145849152 + 145849132 145849172 41 TATCGTACCCATGATACATCCCCAGGTTGCTATTGCAGCTT TATCGTACCCATGATACATCCCCGGGTTGCTATTGCAGCTT < 41bp 0.464026248160003 0.70932954713961 0.02597475 0.12943292 prediction 0.418659094279221 Functional Gain - TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145849152 chr5:145849155 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_124967 0 0 1 0 1 TCERG1 chr5:145849107 3'AG 145849107 Downstream 49bp
chr12 81568705 81568705 1 + T C UCEC 81568702 + 81568682 81568722 41 CTGGGGCAGCTTTGGGGAAGCAGTACTCTCTGACAAGGTGA CTGGGGCAGCTTTGGGGAAGCAGCACTCTCTGACAAGGTGA < 41bp 0.519239643054286 0.728561988548282 0.70388865 0.76956904 prediction 0.418644690987991 Functional Gain - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81568702 chr12:81568705 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_124972 0 0 0 0 1 ACSS3 chr12:81568718 5'GT 81568718 Upstream 14bp
chr17 30815329 30815329 1 + T C UCEC 30815326 + 30815306 30815346 41 AGGCCGTCCTGCTGACATGCCTGTACCTCTCCTACTCCTAC AGGCCGTCCTGCTGACATGCCTGCACCTCTCCTACTCCTAC < 41bp 0.521205440191608 0.73052579610136 0.004309416 0.0070889294 prediction 0.418640711819503 Functional Gain - CDK5R1 ENSG00000176749 CDS Human protein_coding chr17:30815326 chr17:30815329 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_124973 0 0 0 0 1 CDK5R1 chr17:30815265 3'AG 30815265 Downstream 65bp
chr1 3389976 3389976 1 + C T SKCM 3389975 + 3389955 3389995 41 AGAAGCAGCAACGCCGCCTTCCGAGAGGCCCTGAGAGAGAT AGAAGCAGCAACGCCGCCTTCTGAGAGGCCCTGAGAGAGAT < 41bp 0.454585409769773 0.709316252871511 0.26864392 0.11107597 prediction 0.418632505743022 Functional Gain - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3389975 chr1:3389976 stopgain 0.007 0 22 hm5C_associated_SNPs_124976 0 0 0 0 1 ARHGEF16 chr1:3389957 3'AG 3389957 Downstream 20bp
chr20 62373395 62373395 1 + C G BLCA 62373394 + 62373374 62373414 41 TTTCTGTTTGGGGAGCCCACCCTGAGAAAAAGGAAGGTGAG TTTCTGTTTGGGGAGCCCACCGTGAGAAAAAGGAAGGTGAG < 41bp 0.392769473468969 0.709316169344144 0.10420185 0.4410477 prediction 0.418632338688288 Functional Gain - SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62373394 chr20:62373395 nonsynonymous SNV 0.399 0 22 hm5C_associated_SNPs_124977 0 0 1 0 1 SLC2A4RG chr20:62373409 5'GT 62373409 Upstream 15bp
chr1 32050544 32050544 1 + C A LUSC 32050540 + 32050520 32050560 41 TGGGACACATGACGCCTGTCCTGTCGCCCCAGAACCTGCTG TGGGACACATGACGCCTGTCCTGTAGCCCCAGAACCTGCTG < 41bp 0.285381278303305 0.709315179164056 0.36423132 0.35767114 prediction 0.418630358328111 Functional Gain - TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32050540 chr1:32050544 stopgain 0.683 1 25 hm5C_associated_SNPs_124978 0 0 0 0 1 TINAGL1 chr1:32050487 3'AG 32050487 Downstream 58bp
chr4 81791219 81791219 1 + C A rs565372841 81791215 + 81791195 81791235 41 GGATACATCGACTATGCCCACAGGCTAAAGACGGAAGATTT GGATACATCGACTATGCCCACAGGATAAAGACGGAAGATTT < 41bp 0.347783378471233 0.709315120431353 0.22657248 0.3385474 prediction 0.418630240862706 Functional Gain - C4orf22 ENSG00000197826 CDS Human protein_coding chr4:81791215 chr4:81791219 nonsynonymous SNV 0.887 4 25 hm5C_associated_SNPs_124979 0 0 0 0 2 C4orf22 chr4:81791147 3'AG 81791147 Downstream 73bp
chr4 81791219 81791219 1 + C A rs565372841 81791215 + 81791195 81791235 41 GGATACATCGACTATGCCCACAGGCTAAAGACGGAAGATTT GGATACATCGACTATGCCCACAGGATAAAGACGGAAGATTT < 41bp 0.347783378471233 0.709315120431353 0.22657248 0.3385474 prediction 0.418630240862706 Functional Gain - C4orf22 ENSG00000197826 CDS Human protein_coding chr4:81791215 chr4:81791219 nonsynonymous SNV 0.887 4 25 hm5C_associated_SNPs_124979 0 0 0 0 2 C4orf22 chr4:81791289 5'GT 81791289 Upstream 71bp
chr2 67626364 67626364 1 + C G HNSC 67626363 + 67626343 67626383 41 TGTCATCTTCCTTCAGTTCTCCTAATGATCCAGATGGACAG TGTCATCTTCCTTCAGTTCTCGTAATGATCCAGATGGACAG < 41bp 0.393670051806349 0.709312981612805 0.039262295 0.23673028 prediction 0.41862596322561 Functional Gain - ETAA1 ENSG00000143971 CDS Human protein_coding chr2:67626363 chr2:67626364 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_124982 0 0 1 0 2 ETAA1 chr2:67626301 3'AG 67626301 Downstream 64bp
chr2 67626364 67626364 1 + C G HNSC 67626363 + 67626343 67626383 41 TGTCATCTTCCTTCAGTTCTCCTAATGATCCAGATGGACAG TGTCATCTTCCTTCAGTTCTCGTAATGATCCAGATGGACAG < 41bp 0.393670051806349 0.709312981612805 0.039262295 0.23673028 prediction 0.41862596322561 Functional Gain - ETAA1 ENSG00000143971 CDS Human protein_coding chr2:67626363 chr2:67626364 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_124982 0 0 1 0 2 ETAA1 chr2:67626429 5'GT 67626429 Upstream 66bp
chr1 33583527 33583527 1 + T C BLCA 33583524 + 33583504 33583544 41 AACCATCCACGGAGCAGCCCCTGTACAGCAGCAGCCTGTGG AACCATCCACGGAGCAGCCCCTGCACAGCAGCAGCCTGTGG < 41bp 0.522295131573572 0.731594586882619 0.122989506 0.21348873 prediction 0.418598910618094 Functional Gain - AZIN2 ENSG00000142920 CDS Human protein_coding chr1:33583524 chr1:33583527 nonsynonymous SNV 0.761 0 24 hm5C_associated_SNPs_124988 0 0 0 0 1 AZIN2 chr1:33583503 3'AG 33583503 Downstream 25bp
chr19 10220353 10220353 1 + C T SKCM 10220352 + 10220332 10220372 41 GCCTCCTCATCGACTACAACCCCGACTCCCAGGAGCTGGAC GCCTCCTCATCGACTACAACCTCGACTCCCAGGAGCTGGAC < 41bp 0.640810869108353 0.850108245069818 0.03539309 0.31310505 prediction 0.418594751922929 Functional Gain - PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10220352 chr19:10220353 nonsynonymous SNV 0.282 1 22 hm5C_associated_SNPs_124989 0 0 1 0 2 PPAN;PPAN-P2RY11 chr19:10220307 3'AG 10220307 Downstream 47bp
chr19 10220353 10220353 1 + C T SKCM 10220352 + 10220332 10220372 41 GCCTCCTCATCGACTACAACCCCGACTCCCAGGAGCTGGAC GCCTCCTCATCGACTACAACCTCGACTCCCAGGAGCTGGAC < 41bp 0.640810869108353 0.850108245069818 0.03539309 0.31310505 prediction 0.418594751922929 Functional Gain - PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10220352 chr19:10220353 nonsynonymous SNV 0.282 1 22 hm5C_associated_SNPs_124989 0 0 1 0 2 PPAN;PPAN-P2RY11 chr19:10220383 5'GT 10220383 Upstream 31bp
chr8 42591700 42591700 1 + T C LUSC 42591697 + 42591677 42591717 41 GTGGCTCTTTCTGATAGTGTCAGTAACAGGCTCGGTTCTGA GTGGCTCTTTCTGATAGTGTCAGCAACAGGCTCGGTTCTGA < 41bp 0.536880097269465 0.746168962451654 0.35401988 0.56993943 prediction 0.418577730364378 Functional Gain - CHRNB3 ENSG00000147432 CDS Human protein_coding chr8:42591697 chr8:42591700 nonsynonymous SNV 0.335 2 24 hm5C_associated_SNPs_124994 0 0 0 0 1 CHRNB3 chr8:42591627 3'AG 42591627 Downstream 74bp
chr19 52780793 52780793 1 + A G UCEC 52780790 + 52780770 52780810 41 GGAGTCAGGCATGCCACTTACTCAGGTAAAGTGATATTCTC GGAGTCAGGCATGCCACTTACTCGGGTAAAGTGATATTCTC < 41bp 0.476029759082507 0.70928805976088 0.060559183 0.28190893 prediction 0.418576119521759 Functional Gain - ZNF766 ENSG00000196214 CDS Human protein_coding chr19:52780790 chr19:52780793 nonsynonymous SNV 0.090 0 24 hm5C_associated_SNPs_124995 0 0 0 0 1 ZNF766 chr19:52780794 5'GT 52780794 Upstream 2bp
chr10 89474791 89474791 1 + C A SKCM 89474790 + 89474770 89474810 41 ATATCCACGAACTCTTTGTGCCGGAAAACAAACTTGACCAC ATATCCACGAACTCTTTGTGCAGGAAAACAAACTTGACCAC < 41bp 0.631245051297279 0.840531682449311 0.36571404 0.38448906 prediction 0.418573262304064 Functional Gain - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89474790 chr10:89474791 nonsynonymous SNV 0.948 2 22 hm5C_associated_SNPs_124996 0 0 1 0 2 PAPSS2 chr10:89474742 3'AG 89474742 Downstream 50bp
chr10 89474791 89474791 1 + C A SKCM 89474790 + 89474770 89474810 41 ATATCCACGAACTCTTTGTGCCGGAAAACAAACTTGACCAC ATATCCACGAACTCTTTGTGCAGGAAAACAAACTTGACCAC < 41bp 0.631245051297279 0.840531682449311 0.36571404 0.38448906 prediction 0.418573262304064 Functional Gain - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89474790 chr10:89474791 nonsynonymous SNV 0.948 2 22 hm5C_associated_SNPs_124996 0 0 1 0 2 PAPSS2 chr10:89474855 5'GT 89474855 Upstream 65bp
chr17 78079677 78079677 1 + C G rs113085339 78079674 + 78079654 78079694 41 TCGGGGTGATCGTGCGCCGGCAGCTGGACGGCCGCGTGCTG TCGGGGTGATCGTGCGCCGGCAGGTGGACGGCCGCGTGCTG < 41bp 0.500906347681393 0.710187704252697 0.38105083 0.8111365 prediction 0.418562713142609 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78079674 chr17:78079677 nonsynonymous SNV 0.248 1 24 hm5C_associated_SNPs_124999 1 0 1 0 1 GAA chr17:78079693 5'GT 78079693 Upstream 17bp
chr16 67911683 67911683 1 + A G COAD 67911680 + 67911660 67911700 41 TGGACATGCTCCGCTCCAGCCACAGTACCTGGCCTGTGGAT TGGACATGCTCCGCTCCAGCCACGGTACCTGGCCTGTGGAT < 41bp 0.490376521744344 0.709279345248267 0.37790596 0.6464684 prediction 0.418558690496534 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67911680 chr16:67911683 nonsynonymous SNV 0.869 1 24 hm5C_associated_SNPs_125000 0 0 1 0 2 EDC4 chr16:67911644 3'AG 67911644 Downstream 40bp
chr16 67911683 67911683 1 + A G COAD 67911680 + 67911660 67911700 41 TGGACATGCTCCGCTCCAGCCACAGTACCTGGCCTGTGGAT TGGACATGCTCCGCTCCAGCCACGGTACCTGGCCTGTGGAT < 41bp 0.490376521744344 0.709279345248267 0.37790596 0.6464684 prediction 0.418558690496534 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67911680 chr16:67911683 nonsynonymous SNV 0.869 1 24 hm5C_associated_SNPs_125000 0 0 1 0 2 EDC4 chr16:67911748 5'GT 67911748 Upstream 66bp
chr4 74702788 74702788 1 + C G BLCA 74702787 + 74702767 74702807 41 CTGCAGGTGTTCCCCGCAGGCCCGCAGTGCTCCAAGGTGGA CTGCAGGTGTTCCCCGCAGGCGCGCAGTGCTCCAAGGTGGA < 41bp 0.393986533669753 0.709278431879054 0.06963536 0.13519448 prediction 0.418556863758108 Functional Gain - CXCL6 ENSG00000124875 CDS Human protein_coding chr4:74702787 chr4:74702788 nonsynonymous SNV 0.013 4 22 hm5C_associated_SNPs_125001 0 0 0 0 1 CXCL6 chr4:74702813 5'GT 74702813 Upstream 26bp
chr22 38455293 38455293 1 + C T UCEC 38455292 + 38455272 38455312 41 CTGCAGAAGGATGCTCAGAACCTGATCGGGATCAGCATTGG CTGCAGAAGGATGCTCAGAACTTGATCGGGATCAGCATTGG < 41bp 0.629804446735371 0.839079325545647 0.038161546 0.030449212 prediction 0.418549757620553 Functional Gain - PICK1 ENSG00000100151 CDS Human protein_coding chr22:38455292 chr22:38455293 synonymous SNV . 0 22 hm5C_associated_SNPs_125002 0 0 1 0 2 PICK1 chr22:38455241 3'AG 38455241 Downstream 53bp
chr22 38455293 38455293 1 + C T UCEC 38455292 + 38455272 38455312 41 CTGCAGAAGGATGCTCAGAACCTGATCGGGATCAGCATTGG CTGCAGAAGGATGCTCAGAACTTGATCGGGATCAGCATTGG < 41bp 0.629804446735371 0.839079325545647 0.038161546 0.030449212 prediction 0.418549757620553 Functional Gain - PICK1 ENSG00000100151 CDS Human protein_coding chr22:38455292 chr22:38455293 synonymous SNV . 0 22 hm5C_associated_SNPs_125002 0 0 1 0 2 PICK1 chr22:38455352 5'GT 38455352 Upstream 60bp
chr12 54423489 54423489 1 + T C UCEC 54423486 + 54423466 54423506 41 GCGGCCGCCAGATCTACTCGCGGTACCAGACCCTGGAACTG GCGGCCGCCAGATCTACTCGCGGCACCAGACCCTGGAACTG < 41bp 0.497227566255649 0.709273821089315 0.88514197 0.8901743 prediction 0.418547642178629 Functional Gain - HOXC6 ENSG00000197757 CDS Human protein_coding chr12:54423486 chr12:54423489 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_125003 0 0 1 0 1 HOXC6 chr12:54423439 3'AG 54423439 Downstream 51bp
chr5 174156216 174156216 1 + C T COAD 174156215 + 174156195 174156235 41 AACACAAGACCAATCGGAAGCCGCGCACGCCCTTTACCACA AACACAAGACCAATCGGAAGCTGCGCACGCCCTTTACCACA < 41bp 0.471740002954848 0.709254377731672 0.09646124 0.039060056 prediction 0.418508755463344 Functional Gain - MSX2 ENSG00000120149 CDS Human protein_coding chr5:174156215 chr5:174156216 nonsynonymous SNV 0.581 5 22 hm5C_associated_SNPs_125012 0 0 0 0 1 MSX2 chr5:174156162 3'AG 174156162 Downstream 55bp
chr15 98504322 98504322 1 + C T rs112100339 98504321 + 98504301 98504341 41 CACCTGCCCCCGCGCCTCGGCCAGCACCGCGGCCCTGGCTG CACCTGCCCCCGCGCCTCGGCTAGCACCGCGGCCCTGGCTG < 41bp 0.513241701436057 0.722494995021703 0.25859678 0.29784423 prediction 0.418506587171291 Functional Gain - ARRDC4 ENSG00000140450 CDS Human protein_coding chr15:98504321 chr15:98504322 synonymous SNV . 0 22 hm5C_associated_SNPs_125013 0 0 0 0 1 ARRDC4 chr15:98504398 5'GT 98504398 Upstream 77bp
chr22 41918933 41918933 1 + A G GBM 41918930 + 41918910 41918950 41 CCATGGCCTCAAGTGCAAGTCCCAGTTCACCATCACTCCAG CCATGGCCTCAAGTGCAAGTCCCGGTTCACCATCACTCCAG < 41bp 0.457675799519413 0.70924922145916 0.21616295 0.28662002 prediction 0.41849844291832 Functional Gain - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41918930 chr22:41918933 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_125014 0 0 0 0 2 ACO2 chr22:41918834 3'AG 41918834 Downstream 100bp
chr22 41918933 41918933 1 + A G GBM 41918930 + 41918910 41918950 41 CCATGGCCTCAAGTGCAAGTCCCAGTTCACCATCACTCCAG CCATGGCCTCAAGTGCAAGTCCCGGTTCACCATCACTCCAG < 41bp 0.457675799519413 0.70924922145916 0.21616295 0.28662002 prediction 0.41849844291832 Functional Gain - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41918930 chr22:41918933 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_125014 0 0 0 0 2 ACO2 chr22:41918991 5'GT 41918991 Upstream 59bp
chr2 231740398 231740398 1 + C T SKCM 231740397 + 231740377 231740417 41 GACTCCCTGTCCTCCCAGGTCCGGACTCAGATGGAGCTGGA GACTCCCTGTCCTCCCAGGTCTGGACTCAGATGGAGCTGGA < 41bp 0.627507341352867 0.836756356371705 0.34619403 0.29319924 prediction 0.418498030037676 Functional Gain - ITM2C ENSG00000135916 CDS Human protein_coding chr2:231740397 chr2:231740398 nonsynonymous SNV 0.196 3 22 hm5C_associated_SNPs_125015 0 0 1 0 1 ITM2C chr2:231740335 3'AG 231740335 Downstream 64bp
chr2 143676236 143676236 1 + T G LUAD 143676234 + 143676214 143676254 41 TCTATTTCTTGGGAAATTCTCTTGGCCTTCAACCAAAAATG TCTATTTCTTGGGAAATTCTCTGGGCCTTCAACCAAAAATG < 41bp 0.376648873902847 0.709248534664714 0.23957652 0.9002251 prediction 0.418497069329429 Functional Gain - KYNU ENSG00000115919 CDS Human protein_coding chr2:143676234 chr2:143676236 synonymous SNV . 0 23 hm5C_associated_SNPs_125016 0 0 1 0 2 KYNU chr2:143676178 3'AG 143676178 Downstream 59bp
chr2 143676236 143676236 1 + T G LUAD 143676234 + 143676214 143676254 41 TCTATTTCTTGGGAAATTCTCTTGGCCTTCAACCAAAAATG TCTATTTCTTGGGAAATTCTCTGGGCCTTCAACCAAAAATG < 41bp 0.376648873902847 0.709248534664714 0.23957652 0.9002251 prediction 0.418497069329429 Functional Gain - KYNU ENSG00000115919 CDS Human protein_coding chr2:143676234 chr2:143676236 synonymous SNV . 0 23 hm5C_associated_SNPs_125016 0 0 1 0 2 KYNU chr2:143676298 5'GT 143676298 Upstream 63bp
chr2 46803345 46803345 1 + T G STAD 46803343 + 46803323 46803363 41 AAGAGGAGTGGGTACCGGAACTTAAGGAATACGCACCAAAT AAGAGGAGTGGGTACCGGAACTGAAGGAATACGCACCAAAT < 41bp 0.378236856203733 0.709239065236829 0.04851687 0.18952757 prediction 0.418478130473659 Functional Gain - RHOQ ENSG00000119729 CDS Human protein_coding chr2:46803343 chr2:46803345 synonymous SNV . 0 23 hm5C_associated_SNPs_125019 0 0 0 0 1 RHOQ chr2:46803390 5'GT 46803390 Upstream 46bp
chr3 56647717 56647717 1 + A G UCEC 56647714 + 56647694 56647734 41 AGAAGAGGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGC AGAAGAGGAGCTTCGCTTAGCACGGGAACGTGAAGAGATGC < 41bp 0.550784037361276 0.760019855166836 0.41129744 0.7910905 prediction 0.418471635611121 Functional Gain - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56647714 chr3:56647717 nonsynonymous SNV 0.887 0 24 hm5C_associated_SNPs_125021 0 0 1 0 2 CCDC66 chr3:56647639 3'AG 56647639 Downstream 79bp
chr3 56647717 56647717 1 + A G UCEC 56647714 + 56647694 56647734 41 AGAAGAGGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGC AGAAGAGGAGCTTCGCTTAGCACGGGAACGTGAAGAGATGC < 41bp 0.550784037361276 0.760019855166836 0.41129744 0.7910905 prediction 0.418471635611121 Functional Gain - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56647714 chr3:56647717 nonsynonymous SNV 0.887 0 24 hm5C_associated_SNPs_125021 0 0 1 0 2 CCDC66 chr3:56647778 5'GT 56647778 Upstream 62bp
chr22 50649339 50649339 1 + C T PRAD 50649338 + 50649318 50649358 41 CCTGGAGACCATGCATCTGACCGGTGAGTGACCCAGCCGTG CCTGGAGACCATGCATCTGACTGGTGAGTGACCCAGCCGTG < 41bp 0.581791807957983 0.791026784175977 0.5914667 0.4791934 prediction 0.418469952435987 Functional Gain - SELENOO ENSG00000073169 CDS Human protein_coding chr22:50649338 chr22:50649339 unknown . 0 22 hm5C_associated_SNPs_125022 0 0 1 0 1 SELENOO chr22:50649340 5'GT 50649340 Upstream 2bp
chr18 7955352 7955352 1 + C A OV 7955348 + 7955328 7955368 41 GAGATTAGTGTGCTCCTGACCAGGCCAGGGGAGGGTGGCAC GAGATTAGTGTGCTCCTGACCAGGACAGGGGAGGGTGGCAC < 41bp 0.368409060227585 0.709232437624439 0.35516292 0.3810268 prediction 0.418464875248878 Functional Gain - PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955348 chr18:7955352 nonsynonymous SNV 0.957 5 25 hm5C_associated_SNPs_125027 0 0 1 0 1 PTPRM chr18:7955412 5'GT 7955412 Upstream 61bp
chrX 153993215 153993215 1 + A G BRCA 153993212 + 153993192 153993232 41 AACATAAGAAGAAAAAGGAGCGGAAGTCATTGCCAGAAGAA AACATAAGAAGAAAAAGGAGCGGGAGTCATTGCCAGAAGAA < 41bp 0.565356902505259 0.774585672639113 0.37677884 0.87755567 prediction 0.418457540267708 Functional Gain - DKC1 ENSG00000130826 CDS Human protein_coding chrX:153993212 chrX:153993215 nonsynonymous SNV 0.965 3 24 hm5C_associated_SNPs_125029 0 0 1 0 2 DKC1 chrX:153993174 3'AG 153993174 Downstream 42bp
chrX 153993215 153993215 1 + A G BRCA 153993212 + 153993192 153993232 41 AACATAAGAAGAAAAAGGAGCGGAAGTCATTGCCAGAAGAA AACATAAGAAGAAAAAGGAGCGGGAGTCATTGCCAGAAGAA < 41bp 0.565356902505259 0.774585672639113 0.37677884 0.87755567 prediction 0.418457540267708 Functional Gain - DKC1 ENSG00000130826 CDS Human protein_coding chrX:153993212 chrX:153993215 nonsynonymous SNV 0.965 3 24 hm5C_associated_SNPs_125029 0 0 1 0 2 DKC1 chrX:153993241 5'GT 153993241 Upstream 27bp
chr16 20857562 20857562 1 + C T rs118109402 20857561 + 20857541 20857581 41 AGACTCTGAAACTGGACCACCCGAAGATAGCAGCCTGGCGC AGACTCTGAAACTGGACCACCTGAAGATAGCAGCCTGGCGC < 41bp 0.448492320510441 0.709224344269062 0.3878852 0.19047964 prediction 0.418448688538123 Functional Gain - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20857561 chr16:20857562 nonsynonymous SNV 0.976 0 22 hm5C_associated_SNPs_125030 0 0 1 0 2 REXO5 chr16:20857543 3'AG 20857543 Downstream 20bp
chr16 20857562 20857562 1 + C T rs118109402 20857561 + 20857541 20857581 41 AGACTCTGAAACTGGACCACCCGAAGATAGCAGCCTGGCGC AGACTCTGAAACTGGACCACCTGAAGATAGCAGCCTGGCGC < 41bp 0.448492320510441 0.709224344269062 0.3878852 0.19047964 prediction 0.418448688538123 Functional Gain - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20857561 chr16:20857562 nonsynonymous SNV 0.976 0 22 hm5C_associated_SNPs_125030 0 0 1 0 2 REXO5 chr16:20857661 5'GT 20857661 Upstream 100bp
chr17 74076456 74076456 1 + C A STAD 74076455 + 74076435 74076475 41 CTTTGAGCTCCTCCACTTCCCCCGGGACCACAGCAACTGCA CTTTGAGCTCCTCCACTTCCCACGGGACCACAGCAACTGCA < 41bp 0.639252800898059 0.848469804037004 0.79963076 0.8787848 prediction 0.418434006277891 Functional Gain - ZACN ENSG00000186919 CDS Human protein_coding chr17:74076455 chr17:74076456 synonymous SNV . 0 22 hm5C_associated_SNPs_125033 0 0 0 0 1 ZACN chr17:74076505 5'GT 74076505 Upstream 50bp
chr8 145745391 145745391 1 + C T rs114536271 145745390 + 145745370 145745410 41 TGTTATCCTGGGGCTGACTGCCCGGCTCCACACCTCAGAGC TGTTATCCTGGGGCTGACTGCTCGGCTCCACACCTCAGAGC < 41bp 0.601093129554625 0.810309007595244 0.34699798 0.38893116 prediction 0.41843175608124 Functional Gain - LRRC14 ENSG00000160959 CDS Human protein_coding chr8:145745390 chr8:145745391 synonymous SNV . 0 22 hm5C_associated_SNPs_125034 0 0 1 0 1 LRRC14 chr8:145745438 5'GT 145745438 Upstream 48bp
chr15 41222069 41222069 1 + C T SKCM 41222068 + 41222048 41222088 41 GCGGCCGGCTCCGGCGTCTTCCAGCTGCAGCTGCAGGAGTT GCGGCCGGCTCCGGCGTCTTCTAGCTGCAGCTGCAGGAGTT < 41bp 0.592635719185532 0.80184837933946 0.4125263 0.21078923 prediction 0.418425320307857 Functional Gain - DLL4 ENSG00000128917 CDS Human protein_coding chr15:41222068 chr15:41222069 stopgain 1.000 1 22 hm5C_associated_SNPs_125036 0 0 0 0 1 DLL4 chr15:41222045 3'AG 41222045 Downstream 25bp
chr2 54880747 54880747 1 + T G STAD 54880743 + 54880723 54880763 41 TCATCCCCTACATGGCTTCACAGGTGAGGCAGCTGCAGGAG TCATCCCCTACATGGCTTCACAGGGGAGGCAGCTGCAGGAG < 41bp 0.496238167823527 0.709202051613335 0.9128511 0.9360156 prediction 0.41840410322667 Functional Gain - SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54880743 chr2:54880747 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_125042 0 0 1 0 1 SPTBN1 chr2:54880746 3'AG 54880746 Downstream 2bp
chr20 25276257 25276257 1 + A G UCEC 25276254 + 25276234 25276274 41 TTCCAGGTTCAAGGTGTTTGCAGACTATGAAGCCTACATGC TTCCAGGTTCAAGGTGTTTGCAGGCTATGAAGCCTACATGC < 41bp 0.453622705365089 0.709195703843166 0.86890346 0.9022605 prediction 0.418391407686332 Functional Gain - PYGB ENSG00000100994 CDS Human protein_coding chr20:25276254 chr20:25276257 nonsynonymous SNV 0.889 5 24 hm5C_associated_SNPs_125043 0 0 1 0 2 PYGB chr20:25276240 3'AG 25276240 Downstream 18bp
chr20 25276257 25276257 1 + A G UCEC 25276254 + 25276234 25276274 41 TTCCAGGTTCAAGGTGTTTGCAGACTATGAAGCCTACATGC TTCCAGGTTCAAGGTGTTTGCAGGCTATGAAGCCTACATGC < 41bp 0.453622705365089 0.709195703843166 0.86890346 0.9022605 prediction 0.418391407686332 Functional Gain - PYGB ENSG00000100994 CDS Human protein_coding chr20:25276254 chr20:25276257 nonsynonymous SNV 0.889 5 24 hm5C_associated_SNPs_125043 0 0 1 0 2 PYGB chr20:25276306 5'GT 25276306 Upstream 50bp
chrX 117764451 117764451 1 + A G UCEC 117764448 + 117764428 117764468 41 GTATATAGTAAAAATGATTTCAGAAGGTGAGTTACCATCAT GTATATAGTAAAAATGATTTCAGGAGGTGAGTTACCATCAT < 41bp 0.535066692319498 0.744258766458475 0.7541442 0.9171834 prediction 0.418384148277952 Functional Gain - DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117764448 chrX:117764451 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_125045 0 0 1 0 1 DOCK11 chrX:117764453 5'GT 117764453 Upstream 3bp
chr3 134205036 134205036 1 + C A rs375029950 134205035 + 134205015 134205055 41 GGTGGCGCGCGTGCGCAGCGCCGGCCCGAGGTAACGGCGGG GGTGGCGCGCGTGCGCAGCGCAGGCCCGAGGTAACGGCGGG < 41bp 0.582858445282207 0.792049050070288 0.39239138 0.5027434 prediction 0.418381209576162 Functional Gain - CEP63 ENSG00000182923 UTR5 Human protein_coding chr3:134205035 chr3:134205036 . . 0 22 hm5C_associated_SNPs_125047 0 0 0 0 1 CEP63 chr3:134205044 5'GT 134205044 Upstream 9bp
chr16 31122537 31122537 1 + T C UCEC 31122535 + 31122515 31122555 41 CCGGAGCTGCTCAAGAATGCCATGAGGTGGGGTGGCTTGAT CCGGAGCTGCTCAAGAATGCCACGAGGTGGGGTGGCTTGAT < 41bp 0.655304106142988 0.864490577743955 0.4394868 0.41658476 prediction 0.418372943201934 Functional Gain - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31122535 chr16:31122537 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_125049 0 0 1 1 1 BCKDK chr16:31122540 5'GT 31122540 Upstream 4bp
chr16 85688423 85688423 1 + T C UCEC 85688421 + 85688401 85688441 41 CTCCAGCGGCCCGTGCACCACGTGGTGCCCCCCAGTACCGT CTCCAGCGGCCCGTGCACCACGCGGTGCCCCCCAGTACCGT < 41bp 0.623798518347856 0.83297874900799 0.7229876 0.46555904 prediction 0.418360461320266 Functional Gain - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85688421 chr16:85688423 nonsynonymous SNV 0.917 1 23 hm5C_associated_SNPs_125051 0 0 1 0 1 GSE1 chr16:85688400 3'AG 85688400 Downstream 24bp
chr4 49052832 49052832 1 + A G LUSC 49052829 + 49052809 49052849 41 ACCAGAAAGTGGTCATAGACCACAGAGAAGTTTCTGAGAAA ACCAGAAAGTGGTCATAGACCACGGAGAAGTTTCTGAGAAA < 41bp 0.578945019554195 0.788123493673669 0.06961927 0.36993936 prediction 0.418356948238947 Functional Gain - CWH43 ENSG00000109182 CDS Human protein_coding chr4:49052829 chr4:49052832 nonsynonymous SNV 0.042 0 24 hm5C_associated_SNPs_125052 0 0 0 0 1 CWH43 chr4:49052866 5'GT 49052866 Upstream 35bp
chr12 9089872 9089872 1 + C T HNSC 9089871 + 9089851 9089891 41 GTTCGCAGGCGTGGACCCCGCCGCAGCTCCTCTGACATTGC GTTCGCAGGCGTGGACCCCGCTGCAGCTCCTCTGACATTGC < 41bp 0.64459434504014 0.853767563378039 0.22454551 0.2829077 prediction 0.418346436675799 Functional Gain - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9089871 chr12:9089872 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_125053 0 0 0 0 1 PHC1 chr12:9089922 5'GT 9089922 Upstream 51bp
chr2 27320383 27320383 1 + T C KIRC 27320381 + 27320361 27320401 41 CCTGTACCAGGGCCGGAACGCATCGGAGCAGGTGAAGATGC CCTGTACCAGGGCCGGAACGCACCGGAGCAGGTGAAGATGC < 41bp 0.630734420575559 0.839906321881934 0.571372 0.6728687 prediction 0.418343802612749 Functional Gain - KHK ENSG00000138030 CDS Human protein_coding chr2:27320381 chr2:27320383 nonsynonymous SNV 0.084 0 23 hm5C_associated_SNPs_125055 0 0 1 0 1 KHK chr2:27320371 3'AG 27320371 Downstream 13bp
chr19 19612198 19612198 1 + C T LUAD 19612197 + 19612177 19612217 41 ACAGGCCAAGGCCGAGCCCACCGCTGCCCCACACCCCGTGC ACAGGCCAAGGCCGAGCCCACTGCTGCCCCACACCCCGTGC < 41bp 0.464365490261727 0.709169906512809 0.23928347 0.26014698 prediction 0.418339813025619 Functional Gain - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19612197 chr19:19612198 synonymous SNV . 0 22 hm5C_associated_SNPs_125057 0 0 1 0 1 GATAD2A chr19:19612225 5'GT 19612225 Upstream 28bp
chr7 23300345 23300345 1 + C A rs35363287 23300344 + 23300324 23300364 41 CTGCAGCACCAGGACCTTGTCCGCCACCGCCACCACCACCC CTGCAGCACCAGGACCTTGTCAGCCACCGCCACCACCACCC < 41bp 0.441365208681153 0.709163251257707 0.06583613 0.2767379 prediction 0.418326502515414 Functional Gain - GPNMB ENSG00000136235 CDS Human protein_coding chr7:23300344 chr7:23300345 nonsynonymous SNV 0.068 0 22 hm5C_associated_SNPs_125059 0 0 0 0 1 GPNMB chr7:23300392 5'GT 23300392 Upstream 48bp
chr14 24617197 24617197 1 + C A UCEC 24617193 + 24617173 24617213 41 CCTTGCTCCCAGCCCCGAAACTACCTCAACACCCTGTCCAC CCTTGCTCCCAGCCCCGAAACTACATCAACACCCTGTCCAC < 41bp 0.279157477210976 0.709162584934798 0.018321991 0.62658685 prediction 0.418325169869596 Functional Gain - RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617193 chr14:24617197 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_125060 0 0 0 11 1 RNF31 chr14:24617207 5'GT 24617207 Upstream 11bp
chr7 48147076 48147076 1 + C T rs75887102 48147075 + 48147055 48147095 41 GATGGAGTCCTCGGTGTTTGCCGCCATGTGCAGCGCCTGCG GATGGAGTCCTCGGTGTTTGCTGCCATGTGCAGCGCCTGCG < 41bp 0.60636406299411 0.81552125360329 0.4752773 0.25913757 prediction 0.41831438121836 Functional Gain - UPP1 ENSG00000183696 CDS Human protein_coding chr7:48147075 chr7:48147076 synonymous SNV . 0 22 hm5C_associated_SNPs_125065 0 0 1 0 1 UPP1 chr7:48147104 5'GT 48147104 Upstream 29bp
chr11 119003413 119003413 1 + T A UCEC 119003409 + 119003389 119003429 41 CTCTGTGTGACATGACCTGCCCGCTGCCTTCCTCCCTCCGC CTCTGTGTGACATGACCTGCCCGCAGCCTTCCTCCCTCCGC < 41bp 0.377335543031901 0.709156977628605 0.25792426 0.30732882 prediction 0.41831395525721 Functional Gain - HINFP ENSG00000172273 CDS Human protein_coding chr11:119003409 chr11:119003413 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_125066 0 0 0 0 2 HINFP chr11:119003371 3'AG 119003371 Downstream 43bp
chr11 119003413 119003413 1 + T A UCEC 119003409 + 119003389 119003429 41 CTCTGTGTGACATGACCTGCCCGCTGCCTTCCTCCCTCCGC CTCTGTGTGACATGACCTGCCCGCAGCCTTCCTCCCTCCGC < 41bp 0.377335543031901 0.709156977628605 0.25792426 0.30732882 prediction 0.41831395525721 Functional Gain - HINFP ENSG00000172273 CDS Human protein_coding chr11:119003409 chr11:119003413 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_125066 0 0 0 0 2 HINFP chr11:119003491 5'GT 119003491 Upstream 79bp
chr12 132402023 132402023 1 + C T SKCM 132402022 + 132402002 132402042 41 TGGGGGCACCAGCAGCCCTTCCCCGGTGGTCTTCACCGTGG TGGGGGCACCAGCAGCCCTTCTCCGGTGGTCTTCACCGTGG < 41bp 0.611016232050145 0.82017052558667 0.24975494 0.2445198 prediction 0.418308587073051 Functional Gain - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132402022 chr12:132402023 synonymous SNV . 0 22 hm5C_associated_SNPs_125067 0 0 0 0 2 ULK1 chr12:132401956 3'AG 132401956 Downstream 68bp
chr12 132402023 132402023 1 + C T SKCM 132402022 + 132402002 132402042 41 TGGGGGCACCAGCAGCCCTTCCCCGGTGGTCTTCACCGTGG TGGGGGCACCAGCAGCCCTTCTCCGGTGGTCTTCACCGTGG < 41bp 0.611016232050145 0.82017052558667 0.24975494 0.2445198 prediction 0.418308587073051 Functional Gain - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132402022 chr12:132402023 synonymous SNV . 0 22 hm5C_associated_SNPs_125067 0 0 0 0 2 ULK1 chr12:132402099 5'GT 132402099 Upstream 77bp
chr7 107220668 107220668 1 + C G rs532834887 107220667 + 107220647 107220687 41 GTGGGGCCCTGGCTCCCCTCCCCCGCCCAGCCGCGGCGTCT GTGGGGCCCTGGCTCCCCTCCGCCGCCCAGCCGCGGCGTCT < 41bp 0.605001185149534 0.814153910457577 0.17046675 0.36347854 prediction 0.418305450616085 Functional Gain - BCAP29 ENSG00000075790 UTR5 Human protein_coding chr7:107220667 chr7:107220668 . . 0 22 hm5C_associated_SNPs_125069 0 0 0 0 1 BCAP29 chr7:107220746 5'GT 107220746 Upstream 79bp
chr19 17988876 17988876 1 + C T LUSC 17988875 + 17988855 17988895 41 ACTGACTGCGACCCTCTCCTCCTGGGGCGCATCTCTGCCCC ACTGACTGCGACCCTCTCCTCTTGGGGCGCATCTCTGCCCC < 41bp 0.609973150001996 0.819119565614731 0.28886384 0.18963987 prediction 0.418292831225469 Functional Gain - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17988875 chr19:17988876 synonymous SNV . 0 22 hm5C_associated_SNPs_125071 0 0 0 0 1 SLC5A5 chr19:17988902 5'GT 17988902 Upstream 27bp
chr1 152975753 152975753 1 + C T SKCM 152975752 + 152975732 152975772 41 AGCCAGGTTGTACCAAGGTCCCTGAGCCAGGCTGTACCAAG AGCCAGGTTGTACCAAGGTCCTTGAGCCAGGCTGTACCAAG < 41bp 0.57478218903479 0.783923236196364 0.19750199 0.18964294 prediction 0.418282094323147 Functional Gain - SPRR3 ENSG00000163209 CDS Human protein_coding chr1:152975752 chr1:152975753 nonsynonymous SNV 0.072 3 22 hm5C_associated_SNPs_125075 0 0 0 0 1 SPRR3 chr1:152975701 3'AG 152975701 Downstream 53bp
chr3 112063850 112063850 1 + C A rs2272022 112063846 + 112063826 112063866 41 GATGAAAGAGAGCAGCTGTACACACCTGCTTCCTTAAAATG GATGAAAGAGAGCAGCTGTACACAACTGCTTCCTTAAAATG < 41bp 0.28707077973733 0.709140297463696 0.050953954 0.06783685 prediction 0.418280594927392 Functional Gain - CD200 ENSG00000091972 CDS Human protein_coding chr3:112063846 chr3:112063850 nonsynonymous SNV 0.381 0 25 hm5C_associated_SNPs_125076 0 0 0 0 1 CD200 chr3:112063809 3'AG 112063809 Downstream 42bp
chr15 80845028 80845028 1 + C A LGG 80845027 + 80845007 80845047 41 CATGAATGGGATGTCGGTGCCCACAGAGTTCTTATCCCGGC CATGAATGGGATGTCGGTGCCAACAGAGTTCTTATCCCGGC < 41bp 0.448634003355099 0.709139125617965 0.041470587 0.23036373 prediction 0.41827825123593 Functional Gain - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80845027 chr15:80845028 synonymous SNV . 0 22 hm5C_associated_SNPs_125077 0 0 0 0 2 ARNT2 chr15:80844981 3'AG 80844981 Downstream 48bp
chr15 80845028 80845028 1 + C A LGG 80845027 + 80845007 80845047 41 CATGAATGGGATGTCGGTGCCCACAGAGTTCTTATCCCGGC CATGAATGGGATGTCGGTGCCAACAGAGTTCTTATCCCGGC < 41bp 0.448634003355099 0.709139125617965 0.041470587 0.23036373 prediction 0.41827825123593 Functional Gain - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80845027 chr15:80845028 synonymous SNV . 0 22 hm5C_associated_SNPs_125077 0 0 0 0 2 ARNT2 chr15:80845115 5'GT 80845115 Upstream 88bp
chr17 18010524 18010524 1 + T C STAD 18010522 + 18010502 18010542 41 GCCTGACCCACACCATGGAGCATGAGGACGTCATCCAGATC GCCTGACCCACACCATGGAGCACGAGGACGTCATCCAGATC < 41bp 0.62922221419185 0.838346029510783 0.2874537 0.3387466 prediction 0.418247630637866 Functional Gain - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18010522 chr17:18010524 stoploss 0.930 0 23 hm5C_associated_SNPs_125082 0 0 0 0 1 DRG2 chr17:18010468 3'AG 18010468 Downstream 57bp
chr11 93521311 93521311 1 + A G UCEC 93521308 + 93521288 93521328 41 TATGACTCTTGATCCTGTCTCTCAGGATGCACTTCCTCCAA TATGACTCTTGATCCTGTCTCTCGGGATGCACTTCCTCCAA < 41bp 0.585876379924352 0.795000010180716 0.016596794 0.07941595 prediction 0.418247260512728 Functional Gain - MED17 ENSG00000042429 CDS Human protein_coding chr11:93521308 chr11:93521311 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_125084 0 0 1 0 1 MED17 chr11:93521333 5'GT 93521333 Upstream 23bp
chr2 61324846 61324846 1 + T C UCEC 61324843 + 61324823 61324863 41 TGTCTTTATCAGGCCTTTCTCTGTATTGAATTTTCACATTG TGTCTTTATCAGGCCTTTCTCTGCATTGAATTTTCACATTG < 41bp 0.555500086980096 0.764612451039789 0.19868436 0.5305824 prediction 0.418224728119387 Functional Gain - KIAA1841 ENSG00000162929 CDS Human protein_coding chr2:61324843 chr2:61324846 synonymous SNV . 0 24 hm5C_associated_SNPs_125088 0 0 0 0 1 KIAA1841 chr2:61324835 3'AG 61324835 Downstream 12bp
chr4 100521752 100521752 1 + T G SARC 100521748 + 100521728 100521768 41 GCTGGTGGATGCTGTCACCTCTGCTCAGACCTCAGACTCAT GCTGGTGGATGCTGTCACCTCTGCGCAGACCTCAGACTCAT < 41bp 0.515949726600082 0.725061582348266 0.122870475 0.17489347 prediction 0.418223711496367 Functional Gain - MTTP ENSG00000138823 CDS Human protein_coding chr4:100521748 chr4:100521752 synonymous SNV . 0 25 hm5C_associated_SNPs_125089 0 0 1 0 1 MTTP chr4:100521722 3'AG 100521722 Downstream 31bp
chr5 148619397 148619397 1 + C T OV 148619396 + 148619376 148619416 41 ATAGACTCCCCCACCTACAGCCGGCAGGGCATGTCCCCCAC ATAGACTCCCCCACCTACAGCTGGCAGGGCATGTCCCCCAC < 41bp 0.450781364039502 0.709105784611991 0.6591755 0.4349587 prediction 0.418211569223983 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148619396 chr5:148619397 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_125096 0 0 0 0 2 ABLIM3 chr5:148619322 3'AG 148619322 Downstream 76bp
chr5 148619397 148619397 1 + C T OV 148619396 + 148619376 148619416 41 ATAGACTCCCCCACCTACAGCCGGCAGGGCATGTCCCCCAC ATAGACTCCCCCACCTACAGCTGGCAGGGCATGTCCCCCAC < 41bp 0.450781364039502 0.709105784611991 0.6591755 0.4349587 prediction 0.418211569223983 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148619396 chr5:148619397 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_125096 0 0 0 0 2 ABLIM3 chr5:148619451 5'GT 148619451 Upstream 55bp
chr9 128122903 128122903 1 + A G LUSC 128122900 + 128122880 128122920 41 GGGACAAAGTGCAGTGCATCCTGAGAATGTGCTCTACGATT GGGACAAAGTGCAGTGCATCCTGGGAATGTGCTCTACGATT < 41bp 0.559899551830113 0.769000093434541 0.12278134 0.44608665 prediction 0.418201083208858 Functional Gain - GAPVD1 ENSG00000165219 CDS Human protein_coding chr9:128122900 chr9:128122903 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_125099 0 0 1 0 1 GAPVD1 chr9:128122807 3'AG 128122807 Downstream 97bp
chr17 29298383 29298383 1 + C G rs376823094 29298382 + 29298362 29298402 41 GAGATACAGGCGGGCTCCGACCCTGCCCACTGCCCCTGCCC GAGATACAGGCGGGCTCCGACGCTGCCCACTGCCCCTGCCC < 41bp 0.390892018213475 0.709098917412134 0.15646517 0.35239828 prediction 0.418197834824269 Functional Gain - RNF135 ENSG00000181481 CDS Human protein_coding chr17:29298382 chr17:29298383 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_125100 0 0 0 0 1 RNF135 chr17:29298463 5'GT 29298463 Upstream 81bp
chr12 56619248 56619248 1 + T C rs115763630 56619245 + 56619225 56619265 41 ATCAATATCTCTGTCTGGGACGATGTTGGCAATCTGATCCA ATCAATATCTCTGTCTGGGACGACGTTGGCAATCTGATCCA < 41bp 0.537044199102095 0.746139433459639 0.35882938 0.41034815 prediction 0.418190468715088 Functional Gain - NABP2 ENSG00000139579 CDS Human protein_coding chr12:56619245 chr12:56619248 synonymous SNV . 0 24 hm5C_associated_SNPs_125104 0 0 1 0 1 NABP2 chr12:56619157 3'AG 56619157 Downstream 92bp
chr1 1421531 1421531 1 + C A rs819976 1421527 + 1421507 1421547 41 GGTGCGCGACATCGCCATAGCAACCAGGAACACCAAGAAGA GGTGCGCGACATCGCCATAGCAACAAGGAACACCAAGAAGA < 41bp 0.278593704958407 0.709088338494219 0.07998869 0.22684208 prediction 0.418176676988438 Functional Gain - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1421527 chr1:1421531 synonymous SNV . 0 25 hm5C_associated_SNPs_125107 0 0 1 0 2 ATAD3B chr1:1421490 3'AG 1421490 Downstream 42bp
chr1 1421531 1421531 1 + C A rs819976 1421527 + 1421507 1421547 41 GGTGCGCGACATCGCCATAGCAACCAGGAACACCAAGAAGA GGTGCGCGACATCGCCATAGCAACAAGGAACACCAAGAAGA < 41bp 0.278593704958407 0.709088338494219 0.07998869 0.22684208 prediction 0.418176676988438 Functional Gain - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1421527 chr1:1421531 synonymous SNV . 0 25 hm5C_associated_SNPs_125107 0 0 1 0 2 ATAD3B chr1:1421615 5'GT 1421615 Upstream 85bp
chr3 112710162 112710162 1 + C T BLCA 112710161 + 112710141 112710181 41 GCCGTCCGTATCGACCACGCCCCGGACCTTCCGCGGCCAGA GCCGTCCGTATCGACCACGCCTCGGACCTTCCGCGGCCAGA < 41bp 0.595993626840751 0.805076686547108 0.2210738 0.36868495 prediction 0.418166119412713 Functional Gain - GTPBP8 ENSG00000163607 CDS Human protein_coding chr3:112710161 chr3:112710162 nonsynonymous SNV 0.934 3 22 hm5C_associated_SNPs_125109 0 0 1 0 1 GTPBP8 chr3:112710182 5'GT 112710182 Upstream 21bp
chr7 143078697 143078697 1 + C G LUSC 143078696 + 143078676 143078716 41 CCGCCCGTCTCCCGCGATCTCCGTTTCGGTCTCGGCTCCGG CCGCCCGTCTCCCGCGATCTCGGTTTCGGTCTCGGCTCCGG < 41bp 0.389234423223764 0.70908192951492 0.13287848 0.3134036 prediction 0.41816385902984 Functional Gain - ZYX ENSG00000159840 CDS Human protein_coding chr7:143078696 chr7:143078697 synonymous SNV . 0 22 hm5C_associated_SNPs_125110 0 0 1 0 1 ZYX chr7:143078650 3'AG 143078650 Downstream 48bp
chr3 178921549 178921549 1 + T G CESC 178921547 + 178921527 178921567 41 AAAATTCTTTGTGCAACCTACGTGAATGTAAATATTCGAGA AAAATTCTTTGTGCAACCTACGGGAATGTAAATATTCGAGA < 41bp 0.378494464237492 0.709081549298401 0.0639132 0.23449278 prediction 0.418163098596802 Functional Gain - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178921547 chr3:178921549 nonsynonymous SNV 0.989 4 23 hm5C_associated_SNPs_125111 8 0 1 0 1 PIK3CA chr3:178921577 5'GT 178921577 Upstream 29bp
chr1 230883424 230883424 1 + C T CESC 230883423 + 230883403 230883443 41 CCCTGTTCTACAGTGAGAGGCCGCAGATCCCCTTTGTGTGG CCCTGTTCTACAGTGAGAGGCTGCAGATCCCCTTTGTGTGG < 41bp 0.582879331371257 0.791960102811539 0.15215299 0.277976 prediction 0.418161542880564 Functional Gain - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230883423 chr1:230883424 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_125112 0 0 0 0 1 CAPN9 chr1:230883455 5'GT 230883455 Upstream 32bp
chr4 71500284 71500284 1 + A G UCEC 71500281 + 71500261 71500301 41 CGAAGAGGAAGCTCAACCCCCTCAGGTGAGACTTGCACAGA CGAAGAGGAAGCTCAACCCCCTCGGGTGAGACTTGCACAGA < 41bp 0.593425355426206 0.802502450709716 0.02745524 0.0348365 prediction 0.418154190567021 Functional Gain - ENAM ENSG00000132464 CDS Human protein_coding chr4:71500281 chr4:71500284 nonsynonymous SNV 0.944 1 24 hm5C_associated_SNPs_125115 0 0 0 0 1 ENAM chr4:71500285 5'GT 71500285 Upstream 2bp
chr11 6281299 6281299 1 + C T COAD 6281298 + 6281278 6281318 41 GCCCCCTCGCATTCGCGGAGCCGGGACACGAGGTGGGTGCC GCCCCCTCGCATTCGCGGAGCTGGGACACGAGGTGGGTGCC < 41bp 0.48215239495118 0.709068961788736 0.93030894 0.911938 prediction 0.418137923577472 Functional Gain - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6281298 chr11:6281299 synonymous SNV . 0 22 hm5C_associated_SNPs_125117 0 0 0 0 1 CCKBR chr11:6281309 5'GT 6281309 Upstream 11bp
chr2 241516064 241516064 1 + C T UCEC 241516063 + 241516043 241516083 41 GGCCCTTTTCCAGCTGTGGACCGCAGAACCTCTGGACCAGG GGCCCTTTTCCAGCTGTGGACTGCAGAACCTCTGGACCAGG < 41bp 0.451553727157346 0.709067506965824 0.33006448 0.43776295 prediction 0.418135013931648 Functional Gain - RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241516063 chr2:241516064 synonymous SNV . 0 22 hm5C_associated_SNPs_125118 0 0 0 0 1 RNPEPL1 chr2:241515985 3'AG 241515985 Downstream 80bp
chr6 37138635 37138635 1 + C T BLCA 37138634 + 37138614 37138654 41 GGCTCGGTCTACTCAGGCATCCGCGTCTCCGACAACTTGCC GGCTCGGTCTACTCAGGCATCTGCGTCTCCGACAACTTGCC < 41bp 0.57291305520802 0.781972173185374 0.79041016 0.64505 prediction 0.418118235954708 Functional Gain - PIM1 ENSG00000137193 CDS Human protein_coding chr6:37138634 chr6:37138635 nonsynonymous SNV 0.977 4 22 hm5C_associated_SNPs_125122 0 0 1 0 2 PIM1 chr6:37138549 3'AG 37138549 Downstream 87bp
chr6 37138635 37138635 1 + C T BLCA 37138634 + 37138614 37138654 41 GGCTCGGTCTACTCAGGCATCCGCGTCTCCGACAACTTGCC GGCTCGGTCTACTCAGGCATCTGCGTCTCCGACAACTTGCC < 41bp 0.57291305520802 0.781972173185374 0.79041016 0.64505 prediction 0.418118235954708 Functional Gain - PIM1 ENSG00000137193 CDS Human protein_coding chr6:37138634 chr6:37138635 nonsynonymous SNV 0.977 4 22 hm5C_associated_SNPs_125122 0 0 1 0 2 PIM1 chr6:37138655 5'GT 37138655 Upstream 21bp
chr1 43779534 43779534 1 + C T rs142835682 43779533 + 43779513 43779553 41 GATCCTGGCGGTGGTGGGCTCCGTGTCTGCCACCTGCCTCA GATCCTGGCGGTGGTGGGCTCTGTGTCTGCCACCTGCCTCA < 41bp 0.589962690875512 0.79901904030157 0.7015153 0.4523984 prediction 0.418112698852115 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43779533 chr1:43779534 synonymous SNV . 0 22 hm5C_associated_SNPs_125125 0 0 0 0 1 TIE1 chr1:43779449 3'AG 43779449 Downstream 86bp
chr19 50361358 50361358 1 + C T UCEC 50361357 + 50361337 50361377 41 AGCTGTACATGCAGCTCATCCCGCAGCAGCTGCTGGTGAGG AGCTGTACATGCAGCTCATCCTGCAGCAGCTGCTGGTGAGG < 41bp 0.628110371195214 0.837166380262571 0.43303365 0.46986103 prediction 0.418112018134715 Functional Gain - PTOV1 ENSG00000104960 CDS Human protein_coding chr19:50361357 chr19:50361358 nonsynonymous SNV 0.973 4 22 hm5C_associated_SNPs_125126 0 0 1 0 2 PTOV1 chr19:50361314 3'AG 50361314 Downstream 45bp
chr19 50361358 50361358 1 + C T UCEC 50361357 + 50361337 50361377 41 AGCTGTACATGCAGCTCATCCCGCAGCAGCTGCTGGTGAGG AGCTGTACATGCAGCTCATCCTGCAGCAGCTGCTGGTGAGG < 41bp 0.628110371195214 0.837166380262571 0.43303365 0.46986103 prediction 0.418112018134715 Functional Gain - PTOV1 ENSG00000104960 CDS Human protein_coding chr19:50361357 chr19:50361358 nonsynonymous SNV 0.973 4 22 hm5C_associated_SNPs_125126 0 0 1 0 2 PTOV1 chr19:50361371 5'GT 50361371 Upstream 14bp
chr16 88052186 88052186 1 + C T COAD 88052185 + 88052165 88052205 41 CTGCTGGACTACCTCTTCCACCGCGAGGTGCAGGCTGTGTC CTGCTGGACTACCTCTTCCACTGCGAGGTGCAGGCTGTGTC < 41bp 0.447036074556249 0.70905478520313 0.29417843 0.07735711 prediction 0.418109570406259 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88052185 chr16:88052186 nonsynonymous SNV 0.835 4 22 hm5C_associated_SNPs_125129 0 0 0 0 1 BANP chr16:88052273 5'GT 88052273 Upstream 88bp
chr17 1940192 1940192 1 + C G rs373361726 1940191 + 1940171 1940211 41 CCACAGTGCAAGCCCCTGTCCCCTGGAGAGATCCTGGGCTG CCACAGTGCAAGCCCCTGTCCGCTGGAGAGATCCTGGGCTG < 41bp 0.398601013807472 0.709054560577628 0.39414406 0.40395305 prediction 0.418109121155255 Functional Gain - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1940191 chr17:1940192 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_125130 0 0 1 0 2 DPH1 chr17:1940129 3'AG 1940129 Downstream 64bp
chr17 1940192 1940192 1 + C G rs373361726 1940191 + 1940171 1940211 41 CCACAGTGCAAGCCCCTGTCCCCTGGAGAGATCCTGGGCTG CCACAGTGCAAGCCCCTGTCCGCTGGAGAGATCCTGGGCTG < 41bp 0.398601013807472 0.709054560577628 0.39414406 0.40395305 prediction 0.418109121155255 Functional Gain - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1940191 chr17:1940192 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_125130 0 0 1 0 2 DPH1 chr17:1940250 5'GT 1940250 Upstream 59bp
chr12 98987485 98987485 1 + C G rs542602103 98987484 + 98987464 98987504 41 CTCTGTGAGCCGCAACCTTTCCAAGGGAGTGGTTGTGTGAT CTCTGTGAGCCGCAACCTTTCGAAGGGAGTGGTTGTGTGAT < 41bp 0.40182095657174 0.709047442356892 0.9031403 0.9254075 prediction 0.418094884713785 Functional Gain - SLC25A3 ENSG00000075415 UTR5 Human protein_coding chr12:98987484 chr12:98987485 . . 0 22 hm5C_associated_SNPs_125132 1 0 1 0 1 SLC25A3 chr12:98987518 5'GT 98987518 Upstream 34bp
chr10 21805147 21805147 1 + C T LUSC 21805146 + 21805126 21805166 41 GAAACAACTCCCCAGGCTGGCCGGGCAGTACACCGGAGATG GAAACAACTCCCCAGGCTGGCTGGGCAGTACACCGGAGATG < 41bp 0.501483214678079 0.710530560839212 0.44903517 0.32381696 prediction 0.418094692322266 Functional Gain - SKIDA1 ENSG00000180592 CDS Human protein_coding chr10:21805146 chr10:21805147 synonymous SNV . 0 22 hm5C_associated_SNPs_125133 0 0 0 1 1 SKIDA1 chr10:21805125 3'AG 21805125 Downstream 23bp
chr10 102672917 102672917 1 + C A UCEC 102672913 + 102672893 102672933 41 GGCCAGGTTTCCCCTCATCCCCAGCCCCGGGGTCGTCGCCC GGCCAGGTTTCCCCTCATCCCCAGACCCGGGGTCGTCGCCC < 41bp 0.315189418327356 0.709046872480999 0.07304779 0.30605304 prediction 0.418093744961997 Functional Gain - SLF2 ENSG00000119906 CDS Human protein_coding chr10:102672913 chr10:102672917 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_125134 0 0 1 0 1 SLF2 chr10:102673007 5'GT 102673007 Upstream 91bp
chr3 46401242 46401242 1 + C A rs549990114 46401241 + 46401221 46401261 41 GTGGAGGTCCAGGAGTGAGACCAGGAAAGAATGTGAAAGTG GTGGAGGTCCAGGAGTGAGACAAGGAAAGAATGTGAAAGTG < 41bp 0.620695430069675 0.82973426297458 0.35466015 0.45915458 prediction 0.418077665809809 Functional Gain - CCR2 ENSG00000121807 CDS Human protein_coding chr3:46401241 chr3:46401242 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_125136 0 0 0 0 1 CCR2 chr3:46401168 3'AG 46401168 Downstream 75bp
chr10 118359564 118359564 1 + C T UCS 118359563 + 118359543 118359583 41 TTATTTGTTTTCCCAGGAACCCGGGACTTTGTGGCTTGCAA TTATTTGTTTTCCCAGGAACCTGGGACTTTGTGGCTTGCAA < 41bp 0.473602378104776 0.709033583612267 0.8912942 0.8849419 prediction 0.418067167224534 Functional Gain - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118359563 chr10:118359564 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_125140 0 0 0 0 1 PNLIPRP1 chr10:118359559 3'AG 118359559 Downstream 6bp
chr6 80746315 80746315 1 + A G LIHC 80746312 + 80746292 80746332 41 AACAAGTGTTGTTAAAGATTCTCAGGTAAGACTTAATGTTG AACAAGTGTTGTTAAAGATTCTCGGGTAAGACTTAATGTTG < 41bp 0.481170718049707 0.70903339155178 0.14494053 0.39945942 prediction 0.418066783103559 Functional Gain - TTK ENSG00000112742 CDS Human protein_coding chr6:80746312 chr6:80746315 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_125141 0 0 1 0 1 TTK chr6:80746316 5'GT 80746316 Upstream 2bp
chr1 161132826 161132826 1 + C A STAD 161132822 + 161132802 161132842 41 CAATGGTCCAGTTCCCTCTCCACCCCGCCGAGGAGGGGCTC CAATGGTCCAGTTCCCTCTCCACCACGCCGAGGAGGGGCTC < 41bp 0.27379205278602 0.709027955227298 0.19302446 0.10915652 prediction 0.418055910454596 Functional Gain - USP21 ENSG00000143258 CDS Human protein_coding chr1:161132822 chr1:161132826 synonymous SNV . 0 25 hm5C_associated_SNPs_125142 0 0 1 0 1 USP21 chr1:161132864 5'GT 161132864 Upstream 39bp
chr11 1972172 1972172 1 + C T UCEC 1972171 + 1972151 1972191 41 GGCCCACAACTTCGGGTGTTCCGAACCAACTTCTTCATTCA GGCCCACAACTTCGGGTGTTCTGAACCAACTTCTTCATTCA < 41bp 0.607299166504425 0.816326690197395 0.25945595 0.39770842 prediction 0.418055047385941 Functional Gain - MRPL23 ENSG00000214026 CDS Human protein_coding chr11:1972171 chr11:1972172 stopgain 0.925 0 22 hm5C_associated_SNPs_125143 0 0 1 0 2 MRPL23 chr11:1972129 3'AG 1972129 Downstream 44bp
chr11 1972172 1972172 1 + C T UCEC 1972171 + 1972151 1972191 41 GGCCCACAACTTCGGGTGTTCCGAACCAACTTCTTCATTCA GGCCCACAACTTCGGGTGTTCTGAACCAACTTCTTCATTCA < 41bp 0.607299166504425 0.816326690197395 0.25945595 0.39770842 prediction 0.418055047385941 Functional Gain - MRPL23 ENSG00000214026 CDS Human protein_coding chr11:1972171 chr11:1972172 stopgain 0.925 0 22 hm5C_associated_SNPs_125143 0 0 1 0 2 MRPL23 chr11:1972251 5'GT 1972251 Upstream 80bp
chr5 131706054 131706054 1 + C T LUSC 131706053 + 131706033 131706073 41 CTACCTGTCCACCATTGTGACCGAGGTGGGTGCCGGCCCCT CTACCTGTCCACCATTGTGACTGAGGTGGGTGCCGGCCCCT < 41bp 0.552749111394229 0.761774445298618 0.36953712 0.36931255 prediction 0.418050667808779 Functional Gain - SLC22A5 ENSG00000197375 CDS Human protein_coding chr5:131706053 chr5:131706054 synonymous SNV . 0 22 hm5C_associated_SNPs_125145 0 0 1 0 1 SLC22A5 chr5:131706057 5'GT 131706057 Upstream 4bp
chr8 37633451 37633451 1 + C T CESC 37633450 + 37633430 37633470 41 TGTCAGCTGTTATTGTCCCTCCGGGAGGAGCTGTGTAAAAA TGTCAGCTGTTATTGTCCCTCTGGGAGGAGCTGTGTAAAAA < 41bp 0.625548027931281 0.834572102163679 0.5679337 0.4071551 prediction 0.418048148464796 Functional Gain - PLPBP ENSG00000147471 CDS Human protein_coding chr8:37633450 chr8:37633451 nonsynonymous SNV 0.748 4 22 hm5C_associated_SNPs_125147 0 0 0 0 2 PLPBP chr8:37633436 3'AG 37633436 Downstream 16bp
chr8 37633451 37633451 1 + C T CESC 37633450 + 37633430 37633470 41 TGTCAGCTGTTATTGTCCCTCCGGGAGGAGCTGTGTAAAAA TGTCAGCTGTTATTGTCCCTCTGGGAGGAGCTGTGTAAAAA < 41bp 0.625548027931281 0.834572102163679 0.5679337 0.4071551 prediction 0.418048148464796 Functional Gain - PLPBP ENSG00000147471 CDS Human protein_coding chr8:37633450 chr8:37633451 nonsynonymous SNV 0.748 4 22 hm5C_associated_SNPs_125147 0 0 0 0 2 PLPBP chr8:37633534 5'GT 37633534 Upstream 84bp
chr22 24034892 24034892 1 + T C rs564114813 24034889 + 24034869 24034909 41 TCCTGGGCAACACGCATTAACAATGCCGGCCCTGGAGCCAG TCCTGGGCAACACGCATTAACAACGCCGGCCCTGGAGCCAG < 41bp 0.499478797914283 0.709011150618716 0.2227481 0.7760756 prediction 0.418022301237432 Functional Gain - RGL4 ENSG00000159496 CDS Human protein_coding chr22:24034889 chr22:24034892 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_125152 0 0 0 0 1 RGL4 chr22:24034856 3'AG 24034856 Downstream 37bp
chr17 12862115 12862115 1 + C A SKCM 12862114 + 12862094 12862134 41 ACTACAGCTCAATGCCCTCCCCAGACATGGACCCTGCTGAC ACTACAGCTCAATGCCCTCCCAAGACATGGACCCTGCTGAC < 41bp 0.620518806653623 0.829520215646907 0.10155779 0.14222792 prediction 0.418002817986568 Functional Gain - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12862114 chr17:12862115 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_125156 0 0 0 0 2 ARHGAP44 chr17:12862034 3'AG 12862034 Downstream 82bp
chr17 12862115 12862115 1 + C A SKCM 12862114 + 12862094 12862134 41 ACTACAGCTCAATGCCCTCCCCAGACATGGACCCTGCTGAC ACTACAGCTCAATGCCCTCCCAAGACATGGACCCTGCTGAC < 41bp 0.620518806653623 0.829520215646907 0.10155779 0.14222792 prediction 0.418002817986568 Functional Gain - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12862114 chr17:12862115 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_125156 0 0 0 0 2 ARHGAP44 chr17:12862214 5'GT 12862214 Upstream 100bp
chr6 24418414 24418414 1 + T C LUAD 24418412 + 24418392 24418432 41 TCTCCAATGCAGCTCGTGAGCTTAGGGTGCTGATTGATGAT TCTCCAATGCAGCTCGTGAGCTCAGGGTGCTGATTGATGAT < 41bp 0.415839427228886 0.708989814274662 0.055397272 0.0680739 prediction 0.417979628549323 Functional Gain - MRS2 ENSG00000124532 CDS Human protein_coding chr6:24418412 chr6:24418414 synonymous SNV . 0 23 hm5C_associated_SNPs_125163 0 0 1 1 1 MRS2 chr6:24418464 5'GT 24418464 Upstream 51bp
chr16 84793821 84793821 1 + C A COAD 84793817 + 84793797 84793837 41 GAGGGATATTCGCCCTGGAGCTGCCTTTGAGCCCACATATA GAGGGATATTCGCCCTGGAGCTGCATTTGAGCCCACATATA < 41bp 0.275567207428293 0.708986243679624 0.09397906 0.09486443 prediction 0.417972487359247 Functional Gain - USP10 ENSG00000103194 CDS Human protein_coding chr16:84793817 chr16:84793821 synonymous SNV . 0 25 hm5C_associated_SNPs_125164 0 0 1 0 2 USP10 chr16:84793778 3'AG 84793778 Downstream 44bp
chr16 84793821 84793821 1 + C A COAD 84793817 + 84793797 84793837 41 GAGGGATATTCGCCCTGGAGCTGCCTTTGAGCCCACATATA GAGGGATATTCGCCCTGGAGCTGCATTTGAGCCCACATATA < 41bp 0.275567207428293 0.708986243679624 0.09397906 0.09486443 prediction 0.417972487359247 Functional Gain - USP10 ENSG00000103194 CDS Human protein_coding chr16:84793817 chr16:84793821 synonymous SNV . 0 25 hm5C_associated_SNPs_125164 0 0 1 0 2 USP10 chr16:84793881 5'GT 84793881 Upstream 61bp
chr12 85694984 85694984 1 + T C BLCA 85694982 + 85694962 85695002 41 AAGTGGTGGTTCTGTGGTTACTTCATGCATGTTACCACGTG AAGTGGTGGTTCTGTGGTTACTCCATGCATGTTACCACGTG < 41bp 0.669694611358374 0.878679972239927 0.5468467 0.9747851 prediction 0.417970721763105 Functional Gain - ALX1 ENSG00000180318 CDS Human protein_coding chr12:85694982 chr12:85694984 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_125165 0 0 1 0 1 ALX1 chr12:85694933 3'AG 85694933 Downstream 52bp
chr11 61495718 61495718 1 + C T SKCM 61495717 + 61495697 61495737 41 ATTGCTGGCCTGGTGCTGCTCCGGCAGCGGCAGCGGGCCAA ATTGCTGGCCTGGTGCTGCTCTGGCAGCGGCAGCGGGCCAA < 41bp 0.60189779160829 0.810878914887698 0.352987 0.21822971 prediction 0.417962246558816 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61495717 chr11:61495718 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_125167 0 0 1 0 2 DAGLA chr11:61495625 3'AG 61495625 Downstream 94bp
chr11 61495718 61495718 1 + C T SKCM 61495717 + 61495697 61495737 41 ATTGCTGGCCTGGTGCTGCTCCGGCAGCGGCAGCGGGCCAA ATTGCTGGCCTGGTGCTGCTCTGGCAGCGGCAGCGGGCCAA < 41bp 0.60189779160829 0.810878914887698 0.352987 0.21822971 prediction 0.417962246558816 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61495717 chr11:61495718 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_125167 0 0 1 0 2 DAGLA chr11:61495759 5'GT 61495759 Upstream 42bp
chr17 71786812 71786812 1 + C T rs146033941 71786811 + 71786791 71786831 41 GAGACCACTGAGAAGTGCCTCCGAAGAGCTAAGGGCTGCCC GAGACCACTGAGAAGTGCCTCTGAAGAGCTAAGGGCTGCCC < 41bp 0.507431702202506 0.716412074352873 0.07077244 0.059612215 prediction 0.417960744300734 Functional Gain - LINC02092 ENSG00000234721 ncRNA_exonic Human lincRNA chr17:71786811 chr17:71786812 . . 0 22 hm5C_associated_SNPs_125170 0 0 0 0 1 LINC02092 chr17:71786849 5'GT 71786849 Upstream 38bp
chr16 30518142 30518142 1 + C T CESC 30518141 + 30518121 30518161 41 CAGCTGGACCTGCACTTCCCCCCGGGACTCTCCTTCCGCAA CAGCTGGACCTGCACTTCCCCTCGGGACTCTCCTTCCGCAA < 41bp 0.449878268258129 0.708977237227429 0.1933985 0.11536637 prediction 0.417954474454858 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30518141 chr16:30518142 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_125172 0 0 0 0 1 ITGAL chr16:30518177 5'GT 30518177 Upstream 36bp
chr9 131038585 131038585 1 + C T LIHC 131038584 + 131038564 131038604 41 TCCGGGTCAGAGTTCCTGGCCCGGTGCACCTGAGAGGTCGC TCCGGGTCAGAGTTCCTGGCCTGGTGCACCTGAGAGGTCGC < 41bp 0.497745066375091 0.708971924243104 0.44625914 0.37846696 prediction 0.417943848486208 Functional Gain - SWI5 ENSG00000175854 CDS Human protein_coding chr9:131038584 chr9:131038585 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_125174 0 0 1 0 1 SWI5 chr9:131038681 5'GT 131038681 Upstream 97bp
chr22 20043483 20043483 1 + T C COAD 20043481 + 20043461 20043501 41 TGCAGCACAGCAAAGGGAGACGTCATTTGCTACTATGGGAA TGCAGCACAGCAAAGGGAGACGCCATTTGCTACTATGGGAA < 41bp 0.514721867709448 0.723685484142706 0.10198778 0.20335796 prediction 0.417927232866515 Functional Gain - TANGO2 ENSG00000183597 CDS Human protein_coding chr22:20043481 chr22:20043483 nonsynonymous SNV 0.975 0 23 hm5C_associated_SNPs_125177 0 0 1 0 2 TANGO2 chr22:20043466 3'AG 20043466 Downstream 18bp
chr22 20043483 20043483 1 + T C COAD 20043481 + 20043461 20043501 41 TGCAGCACAGCAAAGGGAGACGTCATTTGCTACTATGGGAA TGCAGCACAGCAAAGGGAGACGCCATTTGCTACTATGGGAA < 41bp 0.514721867709448 0.723685484142706 0.10198778 0.20335796 prediction 0.417927232866515 Functional Gain - TANGO2 ENSG00000183597 CDS Human protein_coding chr22:20043481 chr22:20043483 nonsynonymous SNV 0.975 0 23 hm5C_associated_SNPs_125177 0 0 1 0 2 TANGO2 chr22:20043536 5'GT 20043536 Upstream 54bp
chr11 66263170 66263170 1 + C T rs192844889 66263169 + 66263149 66263189 41 CTGGCTCAACATGGTTCGGGCCGGGCTGCTCGCTCTGGAGT CTGGCTCAACATGGTTCGGGCTGGGCTGCTCGCTCTGGAGT < 41bp 0.455728661547816 0.708963167235138 0.5854664 0.32980594 prediction 0.417926334470276 Functional Gain - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66263169 chr11:66263170 synonymous SNV . 0 22 hm5C_associated_SNPs_125178 0 0 0 0 2 DPP3 chr11:66263101 3'AG 66263101 Downstream 70bp
chr11 66263170 66263170 1 + C T rs192844889 66263169 + 66263149 66263189 41 CTGGCTCAACATGGTTCGGGCCGGGCTGCTCGCTCTGGAGT CTGGCTCAACATGGTTCGGGCTGGGCTGCTCGCTCTGGAGT < 41bp 0.455728661547816 0.708963167235138 0.5854664 0.32980594 prediction 0.417926334470276 Functional Gain - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66263169 chr11:66263170 synonymous SNV . 0 22 hm5C_associated_SNPs_125178 0 0 0 0 2 DPP3 chr11:66263221 5'GT 66263221 Upstream 52bp
chr1 235602123 235602123 1 + C A CHOL 235602122 + 235602102 235602142 41 CGGAGAGCTGAGCTTGACTACCGAAAAGCTTTTGGAAATGA CGGAGAGCTGAGCTTGACTACAGAAAAGCTTTTGGAAATGA < 41bp 0.446335489686144 0.708960985712766 0.11226463 0.2235196 prediction 0.417921971425533 Functional Gain - TBCE ENSG00000116957 CDS Human protein_coding chr1:235602122 chr1:235602123 synonymous SNV . 0 22 hm5C_associated_SNPs_125179 0 0 1 0 1 TBCE chr1:235602084 3'AG 235602084 Downstream 40bp
chr17 40714665 40714665 1 + C A rs117419466 40714664 + 40714644 40714684 41 GCCGTATTCCGGTCGGGTCTCCTGGTGCTGACGACGCCGCT GCCGTATTCCGGTCGGGTCTCATGGTGCTGACGACGCCGCT < 41bp 0.622332573449254 0.831293318290909 0.82566977 0.73795265 prediction 0.417921489683312 Functional Gain - COASY ENSG00000068120 CDS Human protein_coding chr17:40714664 chr17:40714665 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_125180 0 0 1 0 1 COASY chr17:40714630 3'AG 40714630 Downstream 36bp
chr12 48361005 48361005 1 + T C COAD 48361002 + 48360982 48361022 41 GTTTGGTAGCTTCTTCTGCACGGTACCTGAGATCCTGGTGC GTTTGGTAGCTTCTTCTGCACGGCACCTGAGATCCTGGTGC < 41bp 0.552217310704072 0.761159712720353 0.20537561 0.24699509 prediction 0.417884804032563 Functional Gain - TMEM106C ENSG00000134291 CDS Human protein_coding chr12:48361002 chr12:48361005 nonsynonymous SNV 0.431 0 24 hm5C_associated_SNPs_125187 0 0 1 0 2 TMEM106C chr12:48360991 3'AG 48360991 Downstream 15bp
chr12 48361005 48361005 1 + T C COAD 48361002 + 48360982 48361022 41 GTTTGGTAGCTTCTTCTGCACGGTACCTGAGATCCTGGTGC GTTTGGTAGCTTCTTCTGCACGGCACCTGAGATCCTGGTGC < 41bp 0.552217310704072 0.761159712720353 0.20537561 0.24699509 prediction 0.417884804032563 Functional Gain - TMEM106C ENSG00000134291 CDS Human protein_coding chr12:48361002 chr12:48361005 nonsynonymous SNV 0.431 0 24 hm5C_associated_SNPs_125187 0 0 1 0 2 TMEM106C chr12:48361044 5'GT 48361044 Upstream 40bp
chr11 111324149 111324149 1 + C G rs117194404 111324148 + 111324128 111324168 41 CTGTAGATGCAGTGTCACAGCCTGAGCTGGGCTCGGAAGGC CTGTAGATGCAGTGTCACAGCGTGAGCTGGGCTCGGAAGGC < 41bp 0.393234058911116 0.708935530175489 0.04688537 0.18249962 prediction 0.417871060350978 Functional Gain - LOC100132078;BTG4 ENSG00000255093 CDS Human transcribed_unitary_pseudogene chr11:111324148 chr11:111324149 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_125192 0 0 0 0 1 LOC100132078;BTG4 chr11:111324134 3'AG 111324134 Downstream 16bp
chr9 133507608 133507608 1 + A G CESC 133507605 + 133507585 133507625 41 ACAGTGGTCCTCCGGCCTTTCTGACCCAGGGCTGGGGCAGC ACAGTGGTCCTCCGGCCTTTCTGGCCCAGGGCTGGGGCAGC < 41bp 0.456489452361016 0.708932971862324 0.11252493 0.21868867 prediction 0.417865943724648 Functional Gain - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133507605 chr9:133507608 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_125194 0 0 1 0 2 FUBP3 chr9:133507589 3'AG 133507589 Downstream 20bp
chr9 133507608 133507608 1 + A G CESC 133507605 + 133507585 133507625 41 ACAGTGGTCCTCCGGCCTTTCTGACCCAGGGCTGGGGCAGC ACAGTGGTCCTCCGGCCTTTCTGGCCCAGGGCTGGGGCAGC < 41bp 0.456489452361016 0.708932971862324 0.11252493 0.21868867 prediction 0.417865943724648 Functional Gain - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133507605 chr9:133507608 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_125194 0 0 1 0 2 FUBP3 chr9:133507665 5'GT 133507665 Upstream 58bp
chr11 19192054 19192054 1 + T C UCEC 19192052 + 19192032 19192072 41 TCCCCTTGGGTTTTATATATCTTGATGCTAGCAACTTTCCA TCCCCTTGGGTTTTATATATCTCGATGCTAGCAACTTTCCA < 41bp 0.485373962316908 0.708932520060673 0.14696005 0.810086 prediction 0.417865040121345 Functional Gain - ZDHHC13 ENSG00000177054 CDS Human protein_coding chr11:19192052 chr11:19192054 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_125196 0 0 0 0 2 ZDHHC13 chr11:19191958 3'AG 19191958 Downstream 97bp
chr11 19192054 19192054 1 + T C UCEC 19192052 + 19192032 19192072 41 TCCCCTTGGGTTTTATATATCTTGATGCTAGCAACTTTCCA TCCCCTTGGGTTTTATATATCTCGATGCTAGCAACTTTCCA < 41bp 0.485373962316908 0.708932520060673 0.14696005 0.810086 prediction 0.417865040121345 Functional Gain - ZDHHC13 ENSG00000177054 CDS Human protein_coding chr11:19192052 chr11:19192054 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_125196 0 0 0 0 2 ZDHHC13 chr11:19192115 5'GT 19192115 Upstream 62bp
chr17 48741378 48741378 1 + T C GBM 48741375 + 48741355 48741395 41 GGAAATTGTCAACCTCATGTCAGTGGATGCCCAGCGCTTCA GGAAATTGTCAACCTCATGTCAGCGGATGCCCAGCGCTTCA < 41bp 0.497298248695796 0.708929516664709 0.23021132 0.84844536 prediction 0.417859033329418 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48741375 chr17:48741378 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_125197 0 0 0 0 2 ABCC3 chr17:48741311 3'AG 48741311 Downstream 68bp
chr17 48741378 48741378 1 + T C GBM 48741375 + 48741355 48741395 41 GGAAATTGTCAACCTCATGTCAGTGGATGCCCAGCGCTTCA GGAAATTGTCAACCTCATGTCAGCGGATGCCCAGCGCTTCA < 41bp 0.497298248695796 0.708929516664709 0.23021132 0.84844536 prediction 0.417859033329418 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48741375 chr17:48741378 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_125197 0 0 0 0 2 ABCC3 chr17:48741472 5'GT 48741472 Upstream 95bp
chr2 27291539 27291539 1 + A G KIRP 27291536 + 27291516 27291556 41 CTTGTCCTCTGGAGACAAACCAGAGGCTGTCATGGTAATCG CTTGTCCTCTGGAGACAAACCAGGGGCTGTCATGGTAATCG < 41bp 0.59049057068084 0.799418464985418 0.859939 0.8944253 prediction 0.417855788609157 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27291536 chr2:27291539 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_125199 0 0 0 0 2 AGBL5 chr2:27291500 3'AG 27291500 Downstream 40bp
chr2 27291539 27291539 1 + A G KIRP 27291536 + 27291516 27291556 41 CTTGTCCTCTGGAGACAAACCAGAGGCTGTCATGGTAATCG CTTGTCCTCTGGAGACAAACCAGGGGCTGTCATGGTAATCG < 41bp 0.59049057068084 0.799418464985418 0.859939 0.8944253 prediction 0.417855788609157 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27291536 chr2:27291539 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_125199 0 0 0 0 2 AGBL5 chr2:27291612 5'GT 27291612 Upstream 74bp
chr16 28883185 28883185 1 + T C rs200463987 28883182 + 28883162 28883202 41 TGCCGCCTCCCATTTTGACTCGATGGAACTGCTTCCCCCAG TGCCGCCTCCCATTTTGACTCGACGGAACTGCTTCCCCCAG < 41bp 0.513632504318052 0.722559874286871 0.4067155 0.78407764 prediction 0.41785473993764 Functional Gain - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28883182 chr16:28883185 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_125200 0 0 1 0 1 SH2B1 chr16:28883101 3'AG 28883101 Downstream 85bp
chr9 127076240 127076240 1 + T C rs150614386 127076237 + 127076217 127076257 41 GACGCCAAGGCGAGGCAGGACTGTGTCAAGGAGATCGGCCT GACGCCAAGGCGAGGCAGGACTGCGTCAAGGAGATCGGCCT < 41bp 0.482020299154191 0.7089234576486 0.16089678 0.30396152 prediction 0.4178469152972 Functional Gain - NEK6 ENSG00000119408 CDS Human protein_coding chr9:127076237 chr9:127076240 synonymous SNV . 0 24 hm5C_associated_SNPs_125202 0 0 1 0 2 NEK6 chr9:127076202 3'AG 127076202 Downstream 39bp
chr9 127076240 127076240 1 + T C rs150614386 127076237 + 127076217 127076257 41 GACGCCAAGGCGAGGCAGGACTGTGTCAAGGAGATCGGCCT GACGCCAAGGCGAGGCAGGACTGCGTCAAGGAGATCGGCCT < 41bp 0.482020299154191 0.7089234576486 0.16089678 0.30396152 prediction 0.4178469152972 Functional Gain - NEK6 ENSG00000119408 CDS Human protein_coding chr9:127076237 chr9:127076240 synonymous SNV . 0 24 hm5C_associated_SNPs_125202 0 0 1 0 2 NEK6 chr9:127076264 5'GT 127076264 Upstream 25bp
chr11 121421301 121421301 1 + A G LGG 121421298 + 121421278 121421318 41 TGGGGTGGGGTGACAGCTACCGGAAGATTTCTGGGGACACT TGGGGTGGGGTGACAGCTACCGGGAGATTTCTGGGGACACT < 41bp 0.573475108963359 0.78239742403075 0.89819056 0.92813396 prediction 0.417844630134783 Functional Gain - SORL1 ENSG00000137642 CDS Human protein_coding chr11:121421298 chr11:121421301 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_125203 0 0 1 0 2 SORL1 chr11:121421294 3'AG 121421294 Downstream 8bp
chr11 121421301 121421301 1 + A G LGG 121421298 + 121421278 121421318 41 TGGGGTGGGGTGACAGCTACCGGAAGATTTCTGGGGACACT TGGGGTGGGGTGACAGCTACCGGGAGATTTCTGGGGACACT < 41bp 0.573475108963359 0.78239742403075 0.89819056 0.92813396 prediction 0.417844630134783 Functional Gain - SORL1 ENSG00000137642 CDS Human protein_coding chr11:121421298 chr11:121421301 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_125203 0 0 1 0 2 SORL1 chr11:121421379 5'GT 121421379 Upstream 79bp
chr17 9549360 9549360 1 + T G rs114382285 9549356 + 9549336 9549376 41 GGCGCTGGGGCGCTACCGGGCGGCTCCGGGCCGCGCCGAGG GGCGCTGGGGCGCTACCGGGCGGCGCCGGGCCGCGCCGAGG < 41bp 0.49071339133377 0.708921218258529 0.6464762 0.8571445 prediction 0.417842436517059 Functional Gain - USP43 ENSG00000154914 CDS Human protein_coding chr17:9549356 chr17:9549360 synonymous SNV . 0 25 hm5C_associated_SNPs_125204 0 0 0 0 1 USP43 chr17:9549453 5'GT 9549453 Upstream 94bp
chr20 19977417 19977417 1 + A G COAD 19977414 + 19977394 19977434 41 CGACTGCTCAGCTCAGAAACCAGAGACACCCTGAGGCAGTG CGACTGCTCAGCTCAGAAACCAGGGACACCCTGAGGCAGTG < 41bp 0.588471419060174 0.797386398020444 0.6866979 0.92127264 prediction 0.417829957920541 Functional Gain - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19977414 chr20:19977417 synonymous SNV . 0 24 hm5C_associated_SNPs_125208 0 0 0 0 2 RIN2 chr20:19977323 3'AG 19977323 Downstream 95bp
chr20 19977417 19977417 1 + A G COAD 19977414 + 19977394 19977434 41 CGACTGCTCAGCTCAGAAACCAGAGACACCCTGAGGCAGTG CGACTGCTCAGCTCAGAAACCAGGGACACCCTGAGGCAGTG < 41bp 0.588471419060174 0.797386398020444 0.6866979 0.92127264 prediction 0.417829957920541 Functional Gain - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19977414 chr20:19977417 synonymous SNV . 0 24 hm5C_associated_SNPs_125208 0 0 0 0 2 RIN2 chr20:19977486 5'GT 19977486 Upstream 70bp
chr1 3342312 3342312 1 + C T LUAD 3342311 + 3342291 3342331 41 AGCACGAGCACGAGAACGCACCAGGTGGGCCACGCGGGGTG AGCACGAGCACGAGAACGCACTAGGTGGGCCACGCGGGGTG < 41bp 0.471963617785203 0.708904418966575 0.8385184 0.79309356 prediction 0.417808837933149 Functional Gain - PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3342311 chr1:3342312 nonsynonymous SNV 0.048 3 22 hm5C_associated_SNPs_125211 0 0 0 0 1 PRDM16 chr1:3342314 5'GT 3342314 Upstream 3bp
chr19 51293729 51293729 1 + C G COAD 51293726 + 51293706 51293746 41 GACCTCTCCTGCTGCTGCTGCTGCTGGTGCTGCCACCCCGG GACCTCTCCTGCTGCTGCTGCTGGTGGTGCTGCCACCCCGG < 41bp 0.506906909994088 0.715808150934448 0.6763357 0.8697579 prediction 0.41780248188072 Functional Gain - ACPT ENSG00000142513 CDS Human protein_coding chr19:51293726 chr19:51293729 nonsynonymous SNV 0.027 0 24 hm5C_associated_SNPs_125212 0 0 0 0 1 ACPT chr19:51293782 5'GT 51293782 Upstream 54bp
chr12 64854074 64854074 1 + A G UCEC 64854071 + 64854051 64854091 41 AAGTGTTGAAAAAACTCAATCACAAAAATATTGTCAAATTA AAGTGTTGAAAAAACTCAATCACGAAAATATTGTCAAATTA < 41bp 0.528149241875915 0.737041862550037 0.062242 0.055087447 prediction 0.417785241348244 Functional Gain - TBK1 ENSG00000183735 CDS Human protein_coding chr12:64854071 chr12:64854074 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_125217 0 0 1 0 1 TBK1 chr12:64854109 5'GT 64854109 Upstream 36bp
chr11 69465892 69465892 1 + C A UCEC 69465888 + 69465868 69465908 41 CCACCCTCTCTCTCTCAGGACTGCCTCCGGGCCTGCCAGGA CCACCCTCTCTCTCTCAGGACTGCATCCGGGCCTGCCAGGA < 41bp 0.284981280206132 0.708891457144092 0.17051885 0.21162802 prediction 0.417782914288185 Functional Gain - CCND1 ENSG00000110092 CDS Human protein_coding chr11:69465888 chr11:69465892 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_125218 0 0 1 0 1 CCND1 chr11:69465886 3'AG 69465886 Downstream 7bp
chr19 544108 544108 1 + C T rs61729587 544107 + 544087 544127 41 TCTTCACTGCTGGTGCTGGCCCTGGGGGCCCTGTCAGTAGG TCTTCACTGCTGGTGCTGGCCTTGGGGGCCCTGTCAGTAGG < 41bp 0.525913062170729 0.734800050566426 0.17741773 0.08973554 prediction 0.417773976791394 Functional Gain - GZMM ENSG00000197540 CDS Human protein_coding chr19:544107 chr19:544108 synonymous SNV . 0 22 hm5C_associated_SNPs_125221 0 0 1 0 1 GZMM chr19:544126 5'GT 544126 Upstream 19bp
chr1 75602877 75602877 1 + C A LUAD 75602876 + 75602856 75602896 41 CCGGTCCATGGCCTCGGGCTCCGGCTGCCCTCCTGGCAAGT CCGGTCCATGGCCTCGGGCTCAGGCTGCCCTCCTGGCAAGT < 41bp 0.631400474855928 0.840286668868001 0.8998947 0.92246896 prediction 0.417772388024144 Functional Gain - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75602876 chr1:75602877 synonymous SNV . 0 22 hm5C_associated_SNPs_125222 0 0 0 0 3 LHX8 chr1:75602785 3'AG 75602785 Downstream 93bp
chr1 75602877 75602877 1 + C A LUAD 75602876 + 75602856 75602896 41 CCGGTCCATGGCCTCGGGCTCCGGCTGCCCTCCTGGCAAGT CCGGTCCATGGCCTCGGGCTCAGGCTGCCCTCCTGGCAAGT < 41bp 0.631400474855928 0.840286668868001 0.8998947 0.92246896 prediction 0.417772388024144 Functional Gain - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75602876 chr1:75602877 synonymous SNV . 0 22 hm5C_associated_SNPs_125222 0 0 0 0 3 LHX8 chr1:75602790 3'AG 75602790 Downstream 88bp
chr1 75602877 75602877 1 + C A LUAD 75602876 + 75602856 75602896 41 CCGGTCCATGGCCTCGGGCTCCGGCTGCCCTCCTGGCAAGT CCGGTCCATGGCCTCGGGCTCAGGCTGCCCTCCTGGCAAGT < 41bp 0.631400474855928 0.840286668868001 0.8998947 0.92246896 prediction 0.417772388024144 Functional Gain - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75602876 chr1:75602877 synonymous SNV . 0 22 hm5C_associated_SNPs_125222 0 0 0 0 3 LHX8 chr1:75602946 5'GT 75602946 Upstream 70bp
chr1 158449749 158449749 1 - A G rs61739693 158449751 - 158449731 158449771 41 AGCAACAGGAATTCGGTGACCATGGTGAGGTTTTCTGCCAA AGCAACAGGAATTCGGTGACCACGGTGAGGTTTTCTGCCAA < 41bp 0.462868991449131 0.708885264344043 0.8471664 0.82991624 prediction 0.417770528688087 Functional Gain - OR10R2 ENSG00000198965 CDS Human protein_coding chr1:158449751 chr1:158449749 nonsynonymous SNV 0.726 0 23 hm5C_associated_SNPs_125223 0 0 0 0 1 OR10R2 chr1:158449695 5'GT 158449695 Upstream 55bp
chr19 36258737 36258737 1 + C T UCEC 36258736 + 36258716 36258756 41 GAAAGCCAAGGCCTTGCCGCCCGCAGCGGGGTCAGTGATAC GAAAGCCAAGGCCTTGCCGCCTGCAGCGGGGTCAGTGATAC < 41bp 0.621911846846745 0.830793622339223 0.011801183 0.024208099 prediction 0.417763550984957 Functional Gain - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36258736 chr19:36258737 synonymous SNV . 0 22 hm5C_associated_SNPs_125224 0 0 1 0 1 PROSER3 chr19:36258705 3'AG 36258705 Downstream 33bp
chr14 20978697 20978697 1 + C T SKCM 20978696 + 20978676 20978716 41 CTGCTGGGCCTGGGGATGGGCCTGGGGTTGGGACTTCATAT CTGCTGGGCCTGGGGATGGGCTTGGGGTTGGGACTTCATAT < 41bp 0.524343747385206 0.733220826885003 0.7256503 0.64407635 prediction 0.417754158999595 Functional Gain - RNASE10 ENSG00000182545 CDS Human protein_coding chr14:20978696 chr14:20978697 synonymous SNV . 0 22 hm5C_associated_SNPs_125226 0 0 0 0 1 RNASE10 chr14:20978626 3'AG 20978626 Downstream 72bp
chr19 48220236 48220236 1 + C T STAD 48220235 + 48220215 48220255 41 GTGGACCCGGACAAGCCCTTCCGCAAACTCAACCCTTTCGG GTGGACCCGGACAAGCCCTTCTGCAAACTCAACCCTTTCGG < 41bp 0.44515393474485 0.708873480086955 0.21221969 0.27331173 prediction 0.41774696017391 Functional Gain - EHD2 ENSG00000024422 CDS Human protein_coding chr19:48220235 chr19:48220236 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_125228 0 0 0 0 1 EHD2 chr19:48220273 5'GT 48220273 Upstream 38bp
chr19 22785641 22785641 1 + C T SKCM 22785640 + 22785620 22785660 41 GCAGCGCTGAAGGAGCAGCACCGAGAGGAGGAGGAGCACAT GCAGCGCTGAAGGAGCAGCACTGAGAGGAGGAGGAGCACAT < 41bp 0.49605787399518 0.708871158035982 0.21450114 0.30202326 prediction 0.417742316071964 Functional Gain - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human other chr19:22785640 chr19:22785641 . . 0 22 hm5C_associated_SNPs_125229 0 0 0 0 1 GOLGA2P9 chr19:22785590 3'AG 22785590 Downstream 52bp
chr3 11078613 11078613 1 + C A LUAD 11078612 + 11078592 11078632 41 AGAGAATGGTCCTGAGCAGCCCCAGGCGGGCAGCTCCACCA AGAGAATGGTCCTGAGCAGCCACAGGCGGGCAGCTCCACCA < 41bp 0.616924837204955 0.825788541026512 0.3740731 0.8835401 prediction 0.417727407643114 Functional Gain - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11078612 chr3:11078613 synonymous SNV . 0 22 hm5C_associated_SNPs_125234 0 0 0 0 1 SLC6A1 chr3:11078548 3'AG 11078548 Downstream 66bp
chr9 90341136 90341136 1 + A G rs41306241 90341133 + 90341113 90341153 41 CGGCCAGGCCCAGCTGTGGCCGGACAGGGACTGGAAGAGAG CGGCCAGGCCCAGCTGTGGCCGGGCAGGGACTGGAAGAGAG < 41bp 0.505344547846865 0.714205805238709 0.36988205 0.52076924 prediction 0.41772251478369 Functional Gain - CTSL ENSG00000135047 UTR5 Human protein_coding chr9:90341133 chr9:90341136 . . 0 24 hm5C_associated_SNPs_125236 0 0 1 0 3 CTSL chr9:90341164 5'GT 90341164 Upstream 29bp
chr9 90341136 90341136 1 + A G rs41306241 90341133 + 90341113 90341153 41 CGGCCAGGCCCAGCTGTGGCCGGACAGGGACTGGAAGAGAG CGGCCAGGCCCAGCTGTGGCCGGGCAGGGACTGGAAGAGAG < 41bp 0.505344547846865 0.714205805238709 0.36988205 0.52076924 prediction 0.41772251478369 Functional Gain - CTSL ENSG00000135047 UTR5 Human protein_coding chr9:90341133 chr9:90341136 . . 0 24 hm5C_associated_SNPs_125236 0 0 1 0 3 CTSL chr9:90341168 5'GT 90341168 Upstream 33bp
chr9 90341136 90341136 1 + A G rs41306241 90341133 + 90341113 90341153 41 CGGCCAGGCCCAGCTGTGGCCGGACAGGGACTGGAAGAGAG CGGCCAGGCCCAGCTGTGGCCGGGCAGGGACTGGAAGAGAG < 41bp 0.505344547846865 0.714205805238709 0.36988205 0.52076924 prediction 0.41772251478369 Functional Gain - CTSL ENSG00000135047 UTR5 Human protein_coding chr9:90341133 chr9:90341136 . . 0 24 hm5C_associated_SNPs_125236 0 0 1 0 3 CTSL chr9:90341223 5'GT 90341223 Upstream 88bp
chr20 4163201 4163201 1 + C A rs376713573 4163197 + 4163177 4163217 41 ACAGAGAAGGTGGCTGCCATCCACCGCCTGGGCATTGGCAC ACAGAGAAGGTGGCTGCCATCCACAGCCTGGGCATTGGCAC < 41bp 0.295315777687203 0.708854669903311 0.018283099 0.060429513 prediction 0.417709339806621 Functional Gain - SMOX ENSG00000088826 CDS Human protein_coding chr20:4163197 chr20:4163201 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_125238 0 0 0 0 1 SMOX chr20:4163130 3'AG 4163130 Downstream 72bp
chr7 43477686 43477686 1 + C A LUAD 43477682 + 43477662 43477702 41 GCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGCT GCCAAGAGCCGCCCCATCATCAAGAGCTTCTTGGGAAAGCT < 41bp 0.30978810639417 0.708853062584855 0.50265545 0.51390296 prediction 0.417706125169709 Functional Gain - HECW1 ENSG00000002746 CDS Human protein_coding chr7:43477682 chr7:43477686 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_125239 0 0 0 0 1 HECW1 chr7:43477602 3'AG 43477602 Downstream 85bp
chr19 41630686 41630686 1 + C T STAD 41630685 + 41630665 41630705 41 CGGCTGCCGGCGCTGAAGGACCGCGCGGCCATGCCTTACAC CGGCTGCCGGCGCTGAAGGACTGCGCGGCCATGCCTTACAC < 41bp 0.596131676049627 0.804980178925484 0.3703642 0.24848121 prediction 0.417697005751713 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41630685 chr19:41630686 nonsynonymous SNV 0.004 3 22 hm5C_associated_SNPs_125241 0 0 0 0 1 CYP2F1 chr19:41630624 3'AG 41630624 Downstream 63bp
chr13 114277524 114277524 1 + T A COAD 114277520 + 114277500 114277540 41 GTGTCCCTCGTGGCCGTTCACCCCTCCACCGTCAACCCGCT GTGTCCCTCGTGGCCGTTCACCCCACCACCGTCAACCCGCT < 41bp 0.445636593032721 0.708843372909459 0.262097 0.3647483 prediction 0.417686745818919 Functional Gain - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114277520 chr13:114277524 nonsynonymous SNV 0.053 1 25 hm5C_associated_SNPs_125244 0 0 1 0 2 TFDP1 chr13:114277495 3'AG 114277495 Downstream 30bp
chr13 114277524 114277524 1 + T A COAD 114277520 + 114277500 114277540 41 GTGTCCCTCGTGGCCGTTCACCCCTCCACCGTCAACCCGCT GTGTCCCTCGTGGCCGTTCACCCCACCACCGTCAACCCGCT < 41bp 0.445636593032721 0.708843372909459 0.262097 0.3647483 prediction 0.417686745818919 Functional Gain - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114277520 chr13:114277524 nonsynonymous SNV 0.053 1 25 hm5C_associated_SNPs_125244 0 0 1 0 2 TFDP1 chr13:114277601 5'GT 114277601 Upstream 78bp
chr10 16528398 16528398 1 + C G OV 16528397 + 16528377 16528417 41 TCTCCATGGAGCTGATGGAACCAGTATCAAGTGTGGCATTA TCTCCATGGAGCTGATGGAACGAGTATCAAGTGTGGCATTA < 41bp 0.393650474205681 0.708836245052179 0.108288854 0.26036608 prediction 0.417672490104357 Functional Gain - PTER ENSG00000165983 CDS Human protein_coding chr10:16528397 chr10:16528398 synonymous SNV . 0 22 hm5C_associated_SNPs_125247 0 0 1 0 1 PTER chr10:16528351 3'AG 16528351 Downstream 48bp
chr16 67397549 67397549 1 + A G LIHC 67397546 + 67397526 67397566 41 ACCGGGAAATAAAGGATTCCCTAAGTACTTCTGCAACTCAG ACCGGGAAATAAAGGATTCCCTAGGTACTTCTGCAACTCAG < 41bp 0.586013215331366 0.794842413409046 0.117419034 0.2458922 prediction 0.41765839615536 Functional Gain - LRRC36 ENSG00000159708 CDS Human protein_coding chr16:67397546 chr16:67397549 nonsynonymous SNV 0.984 1 24 hm5C_associated_SNPs_125253 0 0 0 2 2 LRRC36 chr16:67397493 3'AG 67397493 Downstream 57bp
chr16 67397549 67397549 1 + A G LIHC 67397546 + 67397526 67397566 41 ACCGGGAAATAAAGGATTCCCTAAGTACTTCTGCAACTCAG ACCGGGAAATAAAGGATTCCCTAGGTACTTCTGCAACTCAG < 41bp 0.586013215331366 0.794842413409046 0.117419034 0.2458922 prediction 0.41765839615536 Functional Gain - LRRC36 ENSG00000159708 CDS Human protein_coding chr16:67397546 chr16:67397549 nonsynonymous SNV 0.984 1 24 hm5C_associated_SNPs_125253 0 0 0 2 2 LRRC36 chr16:67397617 5'GT 67397617 Upstream 69bp
chr9 133355166 133355166 1 + T C LUSC 133355164 + 133355144 133355184 41 CACCAGACCTCCTTGGAGCTCTTCATGTACCTGAACGAAGT CACCAGACCTCCTTGGAGCTCTCCATGTACCTGAACGAAGT < 41bp 0.400199057399202 0.708818423092477 0.3717047 0.9405019 prediction 0.417636846184955 Functional Gain - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133355164 chr9:133355166 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_125256 0 0 0 0 2 ASS1 chr9:133355103 3'AG 133355103 Downstream 64bp
chr9 133355166 133355166 1 + T C LUSC 133355164 + 133355144 133355184 41 CACCAGACCTCCTTGGAGCTCTTCATGTACCTGAACGAAGT CACCAGACCTCCTTGGAGCTCTCCATGTACCTGAACGAAGT < 41bp 0.400199057399202 0.708818423092477 0.3717047 0.9405019 prediction 0.417636846184955 Functional Gain - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133355164 chr9:133355166 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_125256 0 0 0 0 2 ASS1 chr9:133355187 5'GT 133355187 Upstream 22bp
chr1 110019488 110019488 1 + C T OV 110019487 + 110019467 110019507 41 GGGGGACTTCTCTGCACCCGCCGAGTTCTTCGTGACCCTTG GGGGGACTTCTCTGCACCCGCTGAGTTCTTCGTGACCCTTG < 41bp 0.459094927700607 0.708815977568735 0.3327998 0.10720432 prediction 0.417631955137469 Functional Gain - SYPL2 ENSG00000143028 CDS Human protein_coding chr1:110019487 chr1:110019488 synonymous SNV . 0 22 hm5C_associated_SNPs_125258 0 0 0 0 1 SYPL2 chr1:110019398 3'AG 110019398 Downstream 91bp
chr12 41900459 41900459 1 + C G LGG 41900455 + 41900435 41900475 41 GAACACATCATGGCTCTGGCCAAGCTTCGTCCACCTACCCC GAACACATCATGGCTCTGGCCAAGGTTCGTCCACCTACCCC < 41bp 0.406097171890665 0.708815740316709 0.15933725 0.45080766 prediction 0.417631480633418 Functional Gain - PDZRN4 ENSG00000165966 CDS Human protein_coding chr12:41900455 chr12:41900459 nonsynonymous SNV 0.882 2 25 hm5C_associated_SNPs_125259 0 0 0 0 1 PDZRN4 chr12:41900514 5'GT 41900514 Upstream 56bp
chr20 20257890 20257890 1 + C A LUSC 20257889 + 20257869 20257909 41 AACCTTGGCGTGAGCGGCAGCCGCATCCACCTCGTGCAGCC AACCTTGGCGTGAGCGGCAGCAGCATCCACCTCGTGCAGCC < 41bp 0.610753464921932 0.819562918106543 0.42282376 0.4305485 prediction 0.417618906369221 Functional Gain - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20257889 chr20:20257890 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_125261 0 0 0 0 1 CFAP61 chr20:20257810 3'AG 20257810 Downstream 81bp
chr3 9756629 9756629 1 + C A LIHC 9756628 + 9756608 9756648 41 ATTGATGTGTACGACTGGGACCGGGATGGAAGGTAGAACTG ATTGATGTGTACGACTGGGACAGGGATGGAAGGTAGAACTG < 41bp 0.640310871380256 0.849120182595503 0.091193974 0.5324307 prediction 0.417618622430494 Functional Gain - CPNE9 ENSG00000144550 CDS Human protein_coding chr3:9756628 chr3:9756629 synonymous SNV . 0 22 hm5C_associated_SNPs_125262 0 0 0 0 2 CPNE9 chr3:9756598 3'AG 9756598 Downstream 32bp
chr3 9756629 9756629 1 + C A LIHC 9756628 + 9756608 9756648 41 ATTGATGTGTACGACTGGGACCGGGATGGAAGGTAGAACTG ATTGATGTGTACGACTGGGACAGGGATGGAAGGTAGAACTG < 41bp 0.640310871380256 0.849120182595503 0.091193974 0.5324307 prediction 0.417618622430494 Functional Gain - CPNE9 ENSG00000144550 CDS Human protein_coding chr3:9756628 chr3:9756629 synonymous SNV . 0 22 hm5C_associated_SNPs_125262 0 0 0 0 2 CPNE9 chr3:9756639 5'GT 9756639 Upstream 11bp
chr5 52779474 52779474 1 + C T UCEC 52779473 + 52779453 52779493 41 GGGCTGGATGGGAAAACCTACCGCAATGAATGTGCACTCCT GGGCTGGATGGGAAAACCTACTGCAATGAATGTGCACTCCT < 41bp 0.624095112386291 0.832900879374199 0.24858728 0.13485268 prediction 0.417611533975817 Functional Gain - FST ENSG00000134363 CDS Human protein_coding chr5:52779473 chr5:52779474 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_125268 0 0 1 0 1 FST chr5:52779552 5'GT 52779552 Upstream 79bp
chr2 15732011 15732011 1 + C A rs199677503 15732007 + 15731987 15732027 41 CCGCCACTGCCACGCCGTGTCAGTCGGGAGGGAGGGAGCGA CCGCCACTGCCACGCCGTGTCAGTAGGGAGGGAGGGAGCGA < 41bp 0.64740328213628 0.856206068999184 0.08969742 0.22727817 prediction 0.417605573725809 Functional Gain - DDX1 ENSG00000079785 UTR5 Human protein_coding chr2:15732007 chr2:15732011 . . 0 25 hm5C_associated_SNPs_125269 0 0 1 0 1 DDX1 chr2:15732073 5'GT 15732073 Upstream 63bp
chr2 173292662 173292662 1 + C G LUSC 173292658 + 173292638 173292678 41 GGAGCCTCTTCGGCTTCTCGCTGGCCATGCACTGGCAACTG GGAGCCTCTTCGGCTTCTCGCTGGGCATGCACTGGCAACTG < 41bp 0.66331332850072 0.87211373722922 0.2802673 0.8686233 prediction 0.417600817457001 Functional Gain - ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173292658 chr2:173292662 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_125270 0 0 1 0 1 ITGA6 chr2:173292698 5'GT 173292698 Upstream 37bp
chr16 88804730 88804730 1 + C G rs150688010 88804729 + 88804709 88804749 41 GCCGGCGCCGAAGCACCCCACCGCGACGCAGAGTCTGCTGA GCCGGCGCCGAAGCACCCCACGGCGACGCAGAGTCTGCTGA < 41bp 0.388581904639013 0.70879788100791 0.098593205 0.3901771 prediction 0.417595762015821 Functional Gain - PIEZO1 ENSG00000103335 CDS Human protein_coding chr16:88804729 chr16:88804730 synonymous SNV . 0 22 hm5C_associated_SNPs_125271 0 0 0 0 1 PIEZO1 chr16:88804813 5'GT 88804813 Upstream 84bp
chr19 855631 855631 1 + T C COAD 855629 + 855609 855649 41 CTGCCGGCTCAGGGACGCCGCCTGGGCAACGGGGTGCAGTG CTGCCGGCTCAGGGACGCCGCCCGGGCAACGGGGTGCAGTG < 41bp 0.468790723062794 0.708797425575687 0.039630175 0.16709009 prediction 0.417594851151374 Functional Gain - ELANE ENSG00000197561 CDS Human protein_coding chr19:855629 chr19:855631 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_125272 0 0 0 0 1 ELANE chr19:855564 3'AG 855564 Downstream 68bp
chr1 22915663 22915663 1 + C T CHOL 22915662 + 22915642 22915682 41 GACCTGAGCCCCGAGCCCCGCCGGGCCGCTGTGGTCAACAT GACCTGAGCCCCGAGCCCCGCTGGGCCGCTGTGGTCAACAT < 41bp 0.458636369525816 0.70879718477951 0.11885756 0.14022124 prediction 0.417594369559021 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22915662 chr1:22915663 nonsynonymous SNV 0.405 2 22 hm5C_associated_SNPs_125273 0 0 1 0 1 EPHA8 chr1:22915699 5'GT 22915699 Upstream 37bp
chr5 139740505 139740505 1 + C T rs374725984 139740504 + 139740484 139740524 41 GAAGCTCCGCAGCCTGCTGGCCGAGGGCCTTGTACTGCTGG GAAGCTCCGCAGCCTGCTGGCTGAGGGCCTTGTACTGCTGG < 41bp 0.57753640840862 0.786325827648249 0.92095196 0.72691166 prediction 0.417578838479258 Functional Gain - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139740504 chr5:139740505 synonymous SNV . 0 22 hm5C_associated_SNPs_125276 0 0 0 0 1 SLC4A9 chr5:139740557 5'GT 139740557 Upstream 53bp
chr1 1222549 1222549 1 + C T SKCM 1222548 + 1222528 1222568 41 ACGTCAGGCGTGGCGGCTGTCCAGGACTGGTACCACTTCCA ACGTCAGGCGTGGCGGCTGTCTAGGACTGGTACCACTTCCA < 41bp 0.593145088611113 0.801932438765356 0.921679 0.89140195 prediction 0.417574700308486 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1222548 chr1:1222549 stopgain 0.000 0 22 hm5C_associated_SNPs_125278 0 0 0 0 1 SCNN1D chr1:1222489 3'AG 1222489 Downstream 61bp
chr8 145101540 145101540 1 + C T SKCM 145101539 + 145101519 145101559 41 TCCCCACAGGCTTCCCTGAACCCCAGTGACCACAAGCTGGA TCCCCACAGGCTTCCCTGAACTCCAGTGACCACAAGCTGGA < 41bp 0.632032113370356 0.840817849814148 0.2115342 0.909462 prediction 0.417571472887585 Functional Gain - SPATC1 ENSG00000186583 CDS Human protein_coding chr8:145101539 chr8:145101540 nonsynonymous SNV 0.990 1 22 hm5C_associated_SNPs_125279 0 0 0 0 1 SPATC1 chr8:145101528 3'AG 145101528 Downstream 13bp
chr1 1464610 1464610 1 + A G UCEC 1464607 + 1464587 1464627 41 GGAACTCCTTCCCCAGGCGCCTGAAGCTGGCCCAGTTTGAC GGAACTCCTTCCCCAGGCGCCTGGAGCTGGCCCAGTTTGAC < 41bp 0.595787440786301 0.804571603514256 0.7029329 0.77724326 prediction 0.417568325455909 Functional Gain - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1464607 chr1:1464610 nonsynonymous SNV 0.940 2 24 hm5C_associated_SNPs_125283 0 0 1 0 1 ATAD3A chr1:1464603 3'AG 1464603 Downstream 8bp
chr4 728734 728734 1 + C A UCEC 728730 + 728710 728750 41 TTGATGACAGTCTGCAGGAGCTGCCTGGTGAAGTACCTGGA TTGATGACAGTCTGCAGGAGCTGCATGGTGAAGTACCTGGA < 41bp 0.299727902161833 0.70877894733287 0.1319341 0.11957893 prediction 0.41755789466574 Functional Gain - PCGF3 ENSG00000185619 CDS Human protein_coding chr4:728730 chr4:728734 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_125284 0 0 1 0 1 PCGF3 chr4:728720 3'AG 728720 Downstream 15bp
chr19 44469989 44469989 1 + C T BLCA 44469988 + 44469968 44470008 41 AAATTGAGATGGAGACTGTTCCAGAAGCAGGACCACATGAA AAATTGAGATGGAGACTGTTCTAGAAGCAGGACCACATGAA < 41bp 0.566166298880287 0.774944152686883 0.5318551 0.41273794 prediction 0.417555707613191 Functional Gain - ZNF221 ENSG00000159905 CDS Human protein_coding chr19:44469988 chr19:44469989 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_125285 0 0 1 0 1 ZNF221 chr19:44469956 3'AG 44469956 Downstream 34bp
chr2 98986505 98986505 1 + C A LUAD 98986504 + 98986484 98986524 41 CTCAAGGTAAAGACCTCAGACCGAGATCTCAATCGCGCTGA CTCAAGGTAAAGACCTCAGACAGAGATCTCAATCGCGCTGA < 41bp 0.428647990813144 0.708771565272272 0.11120418 0.49545106 prediction 0.417543130544544 Functional Gain - CNGA3 ENSG00000144191 CDS Human protein_coding chr2:98986504 chr2:98986505 synonymous SNV . 0 22 hm5C_associated_SNPs_125288 0 0 0 0 1 CNGA3 chr2:98986539 5'GT 98986539 Upstream 35bp
chr5 175731405 175731405 1 + C A rs544017086 175731404 + 175731384 175731424 41 GTTTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCG GTTTCGCTGTGTTGGCCGGGCAGGTCTCCAGCCCCTAACCG < 41bp 0.4577899812124 0.708765120033392 0.161982 0.387908 prediction 0.417530240066784 Functional Gain - SIMC1 ENSG00000170085 CDS Human protein_coding chr5:175731404 chr5:175731405 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_125291 0 0 0 0 1 SIMC1 chr5:175731320 3'AG 175731320 Downstream 86bp
chr15 91827396 91827396 1 + C T CESC 91827395 + 91827375 91827415 41 GGGCAGCCTGTCTGTCTTACCCGGGAACATCATTTCTGCCC GGGCAGCCTGTCTGTCTTACCTGGGAACATCATTTCTGCCC < 41bp 0.600294231523698 0.809057729641785 0.91633844 0.26034644 prediction 0.417526996236174 Functional Gain - SV2B ENSG00000185518 CDS Human protein_coding chr15:91827395 chr15:91827396 synonymous SNV . 0 22 hm5C_associated_SNPs_125292 0 0 0 0 1 SV2B chr15:91827451 5'GT 91827451 Upstream 56bp
chr20 2298061 2298061 1 + C A rs146355154 2298060 + 2298040 2298080 41 AACTCAGCTCATGACACAGACCGAAATCTCAGTGTGGATGT AACTCAGCTCATGACACAGACAGAAATCTCAGTGTGGATGT < 41bp 0.431011184167977 0.708760636874332 0.0039375722 0.05461669 prediction 0.417521273748664 Functional Gain - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2298060 chr20:2298061 synonymous SNV . 0 22 hm5C_associated_SNPs_125296 0 0 0 0 2 TGM3 chr20:2297996 3'AG 2297996 Downstream 66bp
chr20 2298061 2298061 1 + C A rs146355154 2298060 + 2298040 2298080 41 AACTCAGCTCATGACACAGACCGAAATCTCAGTGTGGATGT AACTCAGCTCATGACACAGACAGAAATCTCAGTGTGGATGT < 41bp 0.431011184167977 0.708760636874332 0.0039375722 0.05461669 prediction 0.417521273748664 Functional Gain - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2298060 chr20:2298061 synonymous SNV . 0 22 hm5C_associated_SNPs_125296 0 0 0 0 2 TGM3 chr20:2298131 5'GT 2298131 Upstream 71bp
chr17 1944903 1944903 1 + C G UCEC 1944902 + 1944882 1944922 41 TCCCCACGCCCCGGGCCGGCCCGCGCGGGGGAAGGTAGGCG TCCCCACGCCCCGGGCCGGCCGGCGCGGGGGAAGGTAGGCG < 41bp 0.61045881225267 0.819216849107992 0.37618697 0.74977094 prediction 0.417516073710644 Functional Gain - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1944902 chr17:1944903 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_125297 0 0 1 0 1 DPH1 chr17:1944915 5'GT 1944915 Upstream 13bp
chr13 70681819 70681819 1 + C A LUSC 70681818 + 70681798 70681838 41 TCACATCGAAGTCTTTTCGCCCAGAGCCTGACATGCTTTAC TCACATCGAAGTCTTTTCGCCAAGAGCCTGACATGCTTTAC < 41bp 0.619824378774644 0.828582249815348 0.034129053 0.5403718 prediction 0.417515742081407 Functional Gain - KLHL1 ENSG00000150361 CDS Human antisense chr13:70681818 chr13:70681819 nonsynonymous SNV 0.992 3 22 hm5C_associated_SNPs_125298 0 0 0 2 1 ATXN8OS chr13:70681873 5'GT 70681873 Upstream 55bp
chr11 74700073 74700073 1 + C A COAD 74700069 + 74700049 74700089 41 CTCCTCTGTCTCAGTCTCCCCAGCCTTGGGGCCGGTGCCTC CTCCTCTGTCTCAGTCTCCCCAGCATTGGGGCCGGTGCCTC < 41bp 0.42674804663493 0.708750159772384 0.5394774 0.54840595 prediction 0.417500319544768 Functional Gain - NEU3 ENSG00000162139 UTR5 Human protein_coding chr11:74700069 chr11:74700073 . . 0 25 hm5C_associated_SNPs_125301 0 0 1 0 1 NEU3 chr11:74700063 3'AG 74700063 Downstream 11bp
chr12 54913057 54913057 1 + C T SKCM 54913056 + 54913036 54913076 41 GAACCTCATTGTCTTCCACTCCCGAATGCTGGACTCCGTAG GAACCTCATTGTCTTCCACTCTCGAATGCTGGACTCCGTAG < 41bp 0.647199570046168 0.855942194632482 0.35671175 0.913291 prediction 0.417485249172627 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54913056 chr12:54913057 synonymous SNV . 0 22 hm5C_associated_SNPs_125304 0 0 0 0 2 NCKAP1L chr12:54912971 3'AG 54912971 Downstream 87bp
chr12 54913057 54913057 1 + C T SKCM 54913056 + 54913036 54913076 41 GAACCTCATTGTCTTCCACTCCCGAATGCTGGACTCCGTAG GAACCTCATTGTCTTCCACTCTCGAATGCTGGACTCCGTAG < 41bp 0.647199570046168 0.855942194632482 0.35671175 0.913291 prediction 0.417485249172627 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54913056 chr12:54913057 synonymous SNV . 0 22 hm5C_associated_SNPs_125304 0 0 0 0 2 NCKAP1L chr12:54913116 5'GT 54913116 Upstream 60bp
chr6 36653580 36653580 1 + C T rs139304346 36653579 + 36653559 36653599 41 CTCCAAGAGGAAGCCCTAATCCGCCCACAGGAAGCCTGCAG CTCCAAGAGGAAGCCCTAATCTGCCCACAGGAAGCCTGCAG < 41bp 0.54583376574554 0.754575956180697 0.106481165 0.054112703 prediction 0.417484380870315 Functional Gain - CDKN1A ENSG00000124762 UTR3 Human protein_coding chr6:36653579 chr6:36653580 . . 0 22 hm5C_associated_SNPs_125305 0 0 1 0 1 CDKN1A chr6:36653528 3'AG 36653528 Downstream 53bp
chr6 27222623 27222623 1 + T C LUAD 27222621 + 27222601 27222641 41 CCTACTACGGTGGCCAGACCCCTGGGGCTAACAAAGTGCTG CCTACTACGGTGGCCAGACCCCCGGGGCTAACAAAGTGCTG < 41bp 0.433037613656073 0.708740059084098 0.111646384 0.19745898 prediction 0.417480118168196 Functional Gain - PRSS16 ENSG00000112812 CDS Human protein_coding chr6:27222621 chr6:27222623 synonymous SNV . 0 23 hm5C_associated_SNPs_125307 0 0 0 0 1 PRSS16 chr6:27222651 5'GT 27222651 Upstream 29bp
chr3 20215809 20215809 1 - G T SARC 20215813 - 20215793 20215833 41 ATAGACCAGTCACCAGGCCTCTAGCTAAAAGAGCACTGAAA ATAGACCAGTCACCAGGCCTCTAGATAAAAGAGCACTGAAA < 41bp 0.327043318306437 0.708738130680197 0.03231594 0.03816253 prediction 0.417476261360394 Functional Gain - SGO1 ENSG00000129810 CDS Human protein_coding chr3:20215813 chr3:20215809 nonsynonymous SNV 0.891 0 25 hm5C_associated_SNPs_125310 0 0 1 0 1 SGO1 chr3:20215741 5'GT 20215741 Upstream 69bp
chr7 2740387 2740387 1 + T C LUSC 2740384 + 2740364 2740404 41 GAAGCACATCTACCTACAGCCGATAGGTACGGGACGCCTGC GAAGCACATCTACCTACAGCCGACAGGTACGGGACGCCTGC < 41bp 0.508455592556507 0.717187088773413 0.16257441 0.26436275 prediction 0.417462992433812 Functional Gain - AMZ1 ENSG00000174945 CDS Human protein_coding chr7:2740384 chr7:2740387 nonsynonymous SNV 0.919 3 24 hm5C_associated_SNPs_125312 0 0 0 0 1 AMZ1 chr7:2740389 5'GT 2740389 Upstream 3bp
chr1 11832269 11832269 1 + C A rs78679082 11832268 + 11832248 11832288 41 CTCTACTGCTGCAGGTGTAGCCTGGGTGGCCCCACTGAGCC CTCTACTGCTGCAGGTGTAGCATGGGTGGCCCCACTGAGCC < 41bp 0.610833404733904 0.819564464208706 0.8279655 0.8149046 prediction 0.417462118949604 Functional Gain - C1orf167 ENSG00000215910 CDS Human protein_coding chr1:11832268 chr1:11832269 synonymous SNV . 0 22 hm5C_associated_SNPs_125313 0 0 0 0 1 C1orf167 chr1:11832316 5'GT 11832316 Upstream 48bp
chr19 3281254 3281254 1 + C T HNSC 3281253 + 3281233 3281273 41 ACGGACAAGGAGCGGACGCTCCGGCGCATGCAGCAGATGGT ACGGACAAGGAGCGGACGCTCTGGCGCATGCAGCAGATGGT < 41bp 0.460301690590927 0.708727512049204 0.7163145 0.3941678 prediction 0.417455024098408 Functional Gain - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3281253 chr19:3281254 nonsynonymous SNV 0.927 4 22 hm5C_associated_SNPs_125314 0 0 0 0 2 CELF5 chr19:3281197 3'AG 3281197 Downstream 58bp
chr19 3281254 3281254 1 + C T HNSC 3281253 + 3281233 3281273 41 ACGGACAAGGAGCGGACGCTCCGGCGCATGCAGCAGATGGT ACGGACAAGGAGCGGACGCTCTGGCGCATGCAGCAGATGGT < 41bp 0.460301690590927 0.708727512049204 0.7163145 0.3941678 prediction 0.417455024098408 Functional Gain - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3281253 chr19:3281254 nonsynonymous SNV 0.927 4 22 hm5C_associated_SNPs_125314 0 0 0 0 2 CELF5 chr19:3281343 5'GT 3281343 Upstream 90bp
chr2 136362499 136362499 1 + A G UCEC 136362496 + 136362476 136362516 41 GCAGAAGTGAAAGATACAACCAGAGTTGAAAATCTTATCAA GCAGAAGTGAAAGATACAACCAGGGTTGAAAATCTTATCAA < 41bp 0.539127916381902 0.747846375918314 0.88640964 0.9008319 prediction 0.417436919072825 Functional Gain - R3HDM1 ENSG00000048991 CDS Human protein_coding chr2:136362496 chr2:136362499 synonymous SNV . 0 24 hm5C_associated_SNPs_125317 0 0 0 0 1 R3HDM1 chr2:136362586 5'GT 136362586 Upstream 88bp
chr9 15552889 15552889 1 + C A rs73410253 15552888 + 15552868 15552908 41 CCCCAGCAACGGCGCATGCGCCCGTTCGTCCCTCAGCGAAG CCCCAGCAACGGCGCATGCGCACGTTCGTCCCTCAGCGAAG < 41bp 0.574080294186942 0.782789812042111 0.22658017 0.32803065 prediction 0.417419035710337 Functional Gain - CCDC171 ENSG00000164989 upstream Human protein_coding chr9:15552888 chr9:15552889 . . 0 22 hm5C_associated_SNPs_125318 0 0 0 0 1 CCDC171 chr9:15552958 5'GT 15552958 Upstream 70bp
chr14 21469191 21469191 1 + C T BLCA 21469190 + 21469170 21469210 41 CGCTGGCATTGCAGTGCTGTCCTGGGGCTGCTGGAGGATCG CGCTGGCATTGCAGTGCTGTCTTGGGGCTGCTGGAGGATCG < 41bp 0.588017139778447 0.796719752731933 0.4192009 0.2550146 prediction 0.417405225906971 Functional Gain - SLC39A2 ENSG00000165794 CDS Human protein_coding chr14:21469190 chr14:21469191 nonsynonymous SNV 0.869 2 22 hm5C_associated_SNPs_125321 0 0 0 0 1 SLC39A2 chr14:21469106 3'AG 21469106 Downstream 86bp
chr1 44685725 44685725 1 + T C rs116305257 44685723 + 44685703 44685743 41 CCTACGGAGGAGCTGGTGCACATGTTCAATGAGCTGCGAAG CCTACGGAGGAGCTGGTGCACACGTTCAATGAGCTGCGAAG < 41bp 0.623598890996047 0.832288748002029 0.2639699 0.14308923 prediction 0.417379714011964 Functional Gain - DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44685723 chr1:44685725 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_125324 0 0 1 0 1 DMAP1 chr1:44685689 3'AG 44685689 Downstream 37bp
chr6 71567931 71567931 1 + A G UCEC 71567928 + 71567908 71567948 41 GCAGCCCCAGTGGAGCCTCTCACAGGTAGGGGTCATTTACT GCAGCCCCAGTGGAGCCTCTCACGGGTAGGGGTCATTTACT < 41bp 0.601778226296791 0.810444065206006 0.3997866 0.9081925 prediction 0.41733167781843 Functional Gain - SMAP1 ENSG00000112305 CDS Human protein_coding chr6:71567928 chr6:71567931 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_125333 0 0 0 0 1 SMAP1 chr6:71567932 5'GT 71567932 Upstream 2bp
chr17 78221985 78221985 1 + T C UCEC 78221982 + 78221962 78222002 41 TGCTGTGCTTCTGGGAGGTGCAGTACGGCATCCTGGCCGGG TGCTGTGCTTCTGGGAGGTGCAGCACGGCATCCTGGCCGGG < 41bp 0.533147905307383 0.741807469930331 0.31144172 0.32115903 prediction 0.417319129245896 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78221982 chr17:78221985 nonsynonymous SNV 0.992 5 24 hm5C_associated_SNPs_125337 0 0 1 0 2 SLC26A11 chr17:78221929 3'AG 78221929 Downstream 57bp
chr17 78221985 78221985 1 + T C UCEC 78221982 + 78221962 78222002 41 TGCTGTGCTTCTGGGAGGTGCAGTACGGCATCCTGGCCGGG TGCTGTGCTTCTGGGAGGTGCAGCACGGCATCCTGGCCGGG < 41bp 0.533147905307383 0.741807469930331 0.31144172 0.32115903 prediction 0.417319129245896 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78221982 chr17:78221985 nonsynonymous SNV 0.992 5 24 hm5C_associated_SNPs_125337 0 0 1 0 2 SLC26A11 chr17:78222056 5'GT 78222056 Upstream 72bp
chr12 132237848 132237848 1 + T C rs1982528 132237845 + 132237825 132237865 41 ACCACCTCCTGGGACCACACCACTACCGCCCCCAACCACAG ACCACCTCCTGGGACCACACCACCACCGCCCCCAACCACAG < 41bp 0.478526263153041 0.708656184698502 0.09520823 0.26179367 prediction 0.417312369397004 Functional Gain - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132237845 chr12:132237848 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_125339 0 0 0 0 1 SFSWAP chr12:132237908 5'GT 132237908 Upstream 61bp
chr12 73012775 73012775 1 + T C HNSC 73012772 + 73012752 73012792 41 TGCCAGCCGAGCTCTTTATCCTCTAGATAAATTACTGGACC TGCCAGCCGAGCTCTTTATCCTCCAGATAAATTACTGGACC < 41bp 0.486790294647154 0.708655994769522 0.46322128 0.92885524 prediction 0.417311989539043 Functional Gain - TRHDE ENSG00000072657 CDS Human protein_coding chr12:73012772 chr12:73012775 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_125340 0 0 0 0 1 TRHDE chr12:73012818 5'GT 73012818 Upstream 44bp
chr12 4870249 4870249 1 + C T ESCA 4870248 + 4870228 4870268 41 GCGCAATGCTCTGCGAGTGGCCGAAATCTGGATGGATGAGC GCGCAATGCTCTGCGAGTGGCTGAAATCTGGATGGATGAGC < 41bp 0.447510931457027 0.708655806533381 0.07252166 0.04777783 prediction 0.417311613066762 Functional Gain - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4870248 chr12:4870249 synonymous SNV . 0 22 hm5C_associated_SNPs_125341 0 0 0 0 1 GALNT8 chr12:4870309 5'GT 4870309 Upstream 61bp
chr19 11152082 11152082 1 + C T SKCM 11152081 + 11152061 11152101 41 AGCGACGCCGGCTCCTCCACCCCGACCACCAGCACCCGCAG AGCGACGCCGGCTCCTCCACCTCGACCACCAGCACCCGCAG < 41bp 0.634485318619341 0.84313887274586 0.42370895 0.3192472 prediction 0.417307108253038 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11152081 chr19:11152082 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_125343 0 0 1 0 1 SMARCA4 chr19:11151983 3'AG 11151983 Downstream 100bp
chr16 90160878 90160878 1 + C T HNSC 90160877 + 90160857 90160897 41 CGGTGCGACCCCCGTCCTTCCCCCACCGCCCTCCTGGGAAC CGGTGCGACCCCCGTCCTTCCTCCACCGCCCTCCTGGGAAC < 41bp 0.51620141835781 0.724848825691742 0.36737493 0.96031916 prediction 0.417294814667863 Functional Gain - PRDM7;FAM157B ENSG00000261812 intronic Human transcribed_unprocessed_pseudogene chr16:90160877 chr16:90160878 . . 0 22 hm5C_associated_SNPs_125346 0 0 0 0 1 PRDM7;FAM157B chr16:90160943 5'GT 90160943 Upstream 66bp
chr22 39112055 39112055 1 + C T SKCM 39112054 + 39112034 39112074 41 CGCGTGCGTGATTACCTGGTCCGGAAACGAGTAGGAGACAA CGCGTGCGTGATTACCTGGTCTGGAAACGAGTAGGAGACAA < 41bp 0.62126814252825 0.829915162369579 0.29430097 0.35385936 prediction 0.417294039682657 Functional Gain - GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39112054 chr22:39112055 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_125347 0 0 1 0 1 GTPBP1 chr22:39112092 5'GT 39112092 Upstream 38bp
chr3 185332406 185332406 1 + C T SKCM 185332405 + 185332385 185332425 41 GAAGAAGTGTCGGCCCGACTCCGCCTGGGCAGTGGAAGCAA GAAGAAGTGTCGGCCCGACTCTGCCTGGGCAGTGGAAGCAA < 41bp 0.633258402316129 0.841904647009951 0.026623398 0.02643326 prediction 0.417292489387643 Functional Gain - SENP2 ENSG00000163904 CDS Human protein_coding chr3:185332405 chr3:185332406 nonsynonymous SNV 0.996 0 22 hm5C_associated_SNPs_125348 0 0 1 0 1 SENP2 chr3:185332352 3'AG 185332352 Downstream 55bp
chr2 131130789 131130789 1 + C T LUSC 131130788 + 131130768 131130808 41 GACCCGCCTGCTGAGTGGACCCGGGTGTAAGTCTAACGCCA GACCCGCCTGCTGAGTGGACCTGGGTGTAAGTCTAACGCCA < 41bp 0.486892906581543 0.708637601516068 0.91633344 0.9036393 prediction 0.417275203032137 Functional Gain - PTPN18 ENSG00000072135 CDS Human protein_coding chr2:131130788 chr2:131130789 nonsynonymous SNV 0.776 3 22 hm5C_associated_SNPs_125353 0 0 1 0 1 PTPN18 chr2:131130730 3'AG 131130730 Downstream 60bp
chr1 228353781 228353781 1 + C G rs13375853 228353780 + 228353760 228353800 41 GAGTCCTGCGGCCGCGGGGGCCCCGCCTGCTGCGCGCGCGG GAGTCCTGCGGCCGCGGGGGCGCCGCCTGCTGCGCGCGCGG < 41bp 0.39626127579629 0.708634772906823 0.5277534 0.76421154 prediction 0.417269545813646 Functional Gain - IBA57 ENSG00000181873 CDS Human protein_coding chr1:228353780 chr1:228353781 synonymous SNV . 0 22 hm5C_associated_SNPs_125355 1 0 0 0 1 IBA57 chr1:228353858 5'GT 228353858 Upstream 78bp
chr3 49042575 49042575 1 + T C STAD 49042573 + 49042553 49042593 41 ACTGTGGGCGTGCCCCTTGGCATGGGGCCAGGAGATCACTG ACTGTGGGCGTGCCCCTTGGCACGGGGCCAGGAGATCACTG < 41bp 0.546876707293643 0.755508964650007 0.7840618 0.86374235 prediction 0.417264514712728 Functional Gain - P4HTM ENSG00000178467 CDS Human protein_coding chr3:49042573 chr3:49042575 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_125357 0 0 0 0 1 P4HTM chr3:49042603 5'GT 49042603 Upstream 29bp
chr11 64800008 64800008 1 + C T GBM 64800007 + 64799987 64800027 41 GAGGAGTTCCCTGCTTTCCCCCGGGCCCAGGTGTTTGGTGA GAGGAGTTCCCTGCTTTCCCCTGGGCCCAGGTGTTTGGTGA < 41bp 0.591990120922066 0.800622105542026 0.39814574 0.5815721 prediction 0.41726396923992 Functional Gain - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64800007 chr11:64800008 nonsynonymous SNV 0.778 4 22 hm5C_associated_SNPs_125358 0 0 0 0 1 SNX15 chr11:64800023 5'GT 64800023 Upstream 16bp
chr2 179478856 179478856 1 + A G UCEC 179478853 + 179478833 179478873 41 ACATGTTTTCTGCAGCAACTCTGAAGATGTACTCTTTATTG ACATGTTTTCTGCAGCAACTCTGGAGATGTACTCTTTATTG < 41bp 0.532363519853504 0.740985541832778 0.11272475 0.25705594 prediction 0.417244043958548 Functional Gain - TTN ENSG00000155657 CDS Human antisense chr2:179478853 chr2:179478856 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_125359 0 0 1 0 1 TTN-AS1 chr2:179478762 3'AG 179478762 Downstream 95bp
chr16 4556962 4556962 1 + C T UCEC 4556961 + 4556941 4556981 41 ACACGACCGGGCAGAAAACACCCAGTTTGTCAAGGACTTCT ACACGACCGGGCAGAAAACACTCAGTTTGTCAAGGACTTCT < 41bp 0.444075149448924 0.708600454874755 0.17833015 0.17632657 prediction 0.41720090974951 Functional Gain - HMOX2 ENSG00000103415 CDS Human protein_coding chr16:4556961 chr16:4556962 synonymous SNV . 0 22 hm5C_associated_SNPs_125365 0 0 1 0 2 HMOX2 chr16:4556896 3'AG 4556896 Downstream 67bp
chr16 4556962 4556962 1 + C T UCEC 4556961 + 4556941 4556981 41 ACACGACCGGGCAGAAAACACCCAGTTTGTCAAGGACTTCT ACACGACCGGGCAGAAAACACTCAGTTTGTCAAGGACTTCT < 41bp 0.444075149448924 0.708600454874755 0.17833015 0.17632657 prediction 0.41720090974951 Functional Gain - HMOX2 ENSG00000103415 CDS Human protein_coding chr16:4556961 chr16:4556962 synonymous SNV . 0 22 hm5C_associated_SNPs_125365 0 0 1 0 2 HMOX2 chr16:4557013 5'GT 4557013 Upstream 52bp
chr6 30312962 30312962 1 + T G rs201417696 30312958 + 30312938 30312978 41 GCGCGGCGGTGATGGCGGGGCCGGTGAAGGACCGCGAGGCC GCGCGGCGGTGATGGCGGGGCCGGGGAAGGACCGCGAGGCC < 41bp 0.504375290646983 0.712972355464845 0.88127005 0.90335214 prediction 0.417194129635724 Functional Gain - RPP21 ENSG00000241370 CDS Human protein_coding chr6:30312958 chr6:30312962 nonsynonymous SNV 0.962 4 25 hm5C_associated_SNPs_125368 0 0 1 0 1 RPP21 chr6:30313005 5'GT 30313005 Upstream 44bp
chr12 49690938 49690938 1 + A G UCEC 49690935 + 49690915 49690955 41 TACCCCCACTTCTCAGTACGCGGACCTGTCCGACGCTGCCA TACCCCCACTTCTCAGTACGCGGGCCTGTCCGACGCTGCCA < 41bp 0.455797609322127 0.708595054632277 0.58332884 0.91223836 prediction 0.417190109264555 Functional Gain - PRPH ENSG00000135406 CDS Human protein_coding chr12:49690935 chr12:49690938 nonsynonymous SNV 0.993 5 24 hm5C_associated_SNPs_125369 0 0 0 0 1 PRPH chr12:49690931 3'AG 49690931 Downstream 8bp
chr4 166385678 166385678 1 + T C UCEC 166385675 + 166385655 166385695 41 ACAATTGTCAACCTGATCCACAGTACCCGCATTCACATCAT ACAATTGTCAACCTGATCCACAGCACCCGCATTCACATCAT < 41bp 0.534105206494421 0.742696343293862 0.13803324 0.090078056 prediction 0.417182273598883 Functional Gain - CPE ENSG00000109472 CDS Human protein_coding chr4:166385675 chr4:166385678 synonymous SNV . 0 24 hm5C_associated_SNPs_125371 0 0 0 0 1 CPE chr4:166385738 5'GT 166385738 Upstream 61bp
chr12 53818662 53818662 1 + C T UCEC 53818661 + 53818641 53818681 41 GAGCCCTGGGACTCCTGGCTCCCAGGGTCCCCAGGCTGCCC GAGCCCTGGGACTCCTGGCTCTCAGGGTCCCCAGGCTGCCC < 41bp 0.478064362713888 0.708579539944097 0.041823804 0.022754878 prediction 0.417159079888194 Functional Gain - AMHR2 ENSG00000135409 CDS Human protein_coding chr12:53818661 chr12:53818662 synonymous SNV . 0 22 hm5C_associated_SNPs_125376 0 0 0 0 1 AMHR2 chr12:53818684 5'GT 53818684 Upstream 23bp
chr16 57601428 57601428 1 + C A LUSC 57601424 + 57601404 57601444 41 CTGCAGAGTTGCTGGCACCTCTTACGTACATCTCCCTCGTG CTGCAGAGTTGCTGGCACCTCTTAAGTACATCTCCCTCGTG < 41bp 0.289971370181575 0.708575867725079 0.14595747 0.36983287 prediction 0.417151735450158 Functional Gain - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57601424 chr16:57601428 nonsynonymous SNV 0.110 1 25 hm5C_associated_SNPs_125377 0 0 0 0 2 ADGRG5 chr16:57601382 3'AG 57601382 Downstream 47bp
chr16 57601428 57601428 1 + C A LUSC 57601424 + 57601404 57601444 41 CTGCAGAGTTGCTGGCACCTCTTACGTACATCTCCCTCGTG CTGCAGAGTTGCTGGCACCTCTTAAGTACATCTCCCTCGTG < 41bp 0.289971370181575 0.708575867725079 0.14595747 0.36983287 prediction 0.417151735450158 Functional Gain - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57601424 chr16:57601428 nonsynonymous SNV 0.110 1 25 hm5C_associated_SNPs_125377 0 0 0 0 2 ADGRG5 chr16:57601503 5'GT 57601503 Upstream 76bp
chr1 236925800 236925800 1 + C A LUSC 236925799 + 236925779 236925819 41 GAGCTGCGTCGGGAGCTGCCCCCGGATCAGGCCCAGTACTG GAGCTGCGTCGGGAGCTGCCCACGGATCAGGCCCAGTACTG < 41bp 0.624650808781928 0.833219483498808 0.47689268 0.45871773 prediction 0.417137349433758 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236925799 chr1:236925800 nonsynonymous SNV 0.986 4 22 hm5C_associated_SNPs_125381 0 0 0 0 1 ACTN2 chr1:236925761 3'AG 236925761 Downstream 40bp
chr20 42271262 42271262 1 + C T BRCA 42271261 + 42271241 42271281 41 GTGGAGTTCAAGAAATTGAACCAGGTACAGAGCCTACAAGG GTGGAGTTCAAGAAATTGAACTAGGTACAGAGCCTACAAGG < 41bp 0.470313817739507 0.708568375242345 0.9428104 0.8166324 prediction 0.417136750484689 Functional Gain - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42271261 chr20:42271262 stopgain 0.997 1 22 hm5C_associated_SNPs_125382 0 0 1 0 1 IFT52 chr20:42271264 5'GT 42271264 Upstream 3bp
chr15 44084568 44084568 1 + C A rs201862042 44084564 + 44084544 44084584 41 ACGGAGGCAGGTTGGAGCCGCTGCCGTCGCCATGACCCGTG ACGGAGGCAGGTTGGAGCCGCTGCAGTCGCCATGACCCGTG < 41bp 0.649650434522851 0.858216771326697 0.28228647 0.44970128 prediction 0.417132673607692 Functional Gain - SERF2-C15ORF63 ENSG00000140264 UTR5 Human protein_coding chr15:44084564 chr15:44084568 . . 0 25 hm5C_associated_SNPs_125384 0 0 1 0 1 SERF2 chr15:44084581 5'GT 44084581 Upstream 14bp
chr7 5327588 5327588 1 + C T SKCM 5327587 + 5327567 5327607 41 TCAGGGCCAGGGCCTTAGGGCCAGGGGCGTCCCAGCTTTCA TCAGGGCCAGGGCCTTAGGGCTAGGGGCGTCCCAGCTTTCA < 41bp 0.466029473917876 0.708565417506021 0.7614845 0.3257677 prediction 0.417130835012042 Functional Gain - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5327587 chr7:5327588 synonymous SNV . 0 22 hm5C_associated_SNPs_125385 0 0 0 0 1 SLC29A4 chr7:5327616 5'GT 5327616 Upstream 29bp
chr1 152659372 152659372 1 + C T CHOL 152659371 + 152659351 152659391 41 AGCCCCCTCCCAAGTGTCCTCCCAAGTGTACCCCAAAATGT AGCCCCCTCCCAAGTGTCCTCTCAAGTGTACCCCAAAATGT < 41bp 0.617127039643565 0.825675326119308 0.2609123 0.36648804 prediction 0.417096572951487 Functional Gain - LCE2B ENSG00000159455 CDS Human protein_coding chr1:152659371 chr1:152659372 nonsynonymous SNV 0.554 3 22 hm5C_associated_SNPs_125394 0 0 0 0 1 LCE2B chr1:152659300 3'AG 152659300 Downstream 73bp
chr18 10548362 10548362 1 + C T COAD 10548361 + 10548341 10548381 41 GTAGCTGCAGAAAGATGTGTCCGGGAGAGCTATAGGTAAGA GTAGCTGCAGAAAGATGTGTCTGGGAGAGCTATAGGTAAGA < 41bp 0.461988849197491 0.70853303135597 0.33187652 0.27176473 prediction 0.41706606271194 Functional Gain - NAPG ENSG00000134265 CDS Human protein_coding chr18:10548361 chr18:10548362 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_125395 0 0 1 0 2 NAPG chr18:10548296 3'AG 10548296 Downstream 67bp
chr18 10548362 10548362 1 + C T COAD 10548361 + 10548341 10548381 41 GTAGCTGCAGAAAGATGTGTCCGGGAGAGCTATAGGTAAGA GTAGCTGCAGAAAGATGTGTCTGGGAGAGCTATAGGTAAGA < 41bp 0.461988849197491 0.70853303135597 0.33187652 0.27176473 prediction 0.41706606271194 Functional Gain - NAPG ENSG00000134265 CDS Human protein_coding chr18:10548361 chr18:10548362 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_125395 0 0 1 0 2 NAPG chr18:10548375 5'GT 10548375 Upstream 14bp
chr17 34313674 34313674 1 - G A rs113937434 34313675 - 34313655 34313695 41 TTCCCACAGCATGAAGATCTCCGTGGCTGCCATTCCCTTCT TTCCCACAGCATGAAGATCTCTGTGGCTGCCATTCCCTTCT < 41bp 0.59643675208574 0.804967376754434 0.8118144 0.35055196 prediction 0.417061249337388 Functional Gain - CCL14 ENSG00000213494;ENSG00000266956 CDS Human other chr17:34313675 chr17:34313674 synonymous SNV . 0 22 hm5C_associated_SNPs_125396 0 0 0 0 2 CCL14 chr17:34313607 5'GT 34313607 Upstream 68bp
chr17 34313674 34313674 1 - G A rs113937434 34313675 - 34313655 34313695 41 TTCCCACAGCATGAAGATCTCCGTGGCTGCCATTCCCTTCT TTCCCACAGCATGAAGATCTCTGTGGCTGCCATTCCCTTCT < 41bp 0.59643675208574 0.804967376754434 0.8118144 0.35055196 prediction 0.417061249337388 Functional Gain - CCL14 ENSG00000213494;ENSG00000266956 CDS Human other chr17:34313675 chr17:34313674 synonymous SNV . 0 22 hm5C_associated_SNPs_125396 0 0 0 0 2 CCL15-CCL14 chr17:34313740 3'AG 34313740 Downstream 67bp
chr9 140508859 140508859 1 + C T SKCM 140508858 + 140508838 140508878 41 GCGCAGTGGCACGAGCAGATCCTGGTGCCTGCCTTGCCCCA GCGCAGTGGCACGAGCAGATCTTGGTGCCTGCCTTGCCCCA < 41bp 0.59405721132406 0.802586451556464 0.8805038 0.8164568 prediction 0.417058480464807 Functional Gain - ARRDC1 ENSG00000197070 CDS Human protein_coding chr9:140508858 chr9:140508859 synonymous SNV . 0 22 hm5C_associated_SNPs_125398 0 0 1 0 1 ARRDC1 chr9:140508927 5'GT 140508927 Upstream 69bp
chr3 9783057 9783057 1 + T G BRCA 9783055 + 9783035 9783075 41 AGTCCTGGCAGCGGCTCCGGCATGACTTGGAGCGAGCTCGG AGTCCTGGCAGCGGCTCCGGCAGGACTTGGAGCGAGCTCGG < 41bp 0.711530759566848 0.920059508754173 0.22505885 0.7214725 prediction 0.41705749837465 Functional Gain - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9783055 chr3:9783057 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_125399 0 0 0 0 2 BRPF1 chr3:9782992 3'AG 9782992 Downstream 66bp
chr3 9783057 9783057 1 + T G BRCA 9783055 + 9783035 9783075 41 AGTCCTGGCAGCGGCTCCGGCATGACTTGGAGCGAGCTCGG AGTCCTGGCAGCGGCTCCGGCAGGACTTGGAGCGAGCTCGG < 41bp 0.711530759566848 0.920059508754173 0.22505885 0.7214725 prediction 0.41705749837465 Functional Gain - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9783055 chr3:9783057 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_125399 0 0 0 0 2 BRPF1 chr3:9783123 5'GT 9783123 Upstream 67bp
chr5 162945233 162945233 1 + C T COAD 162945232 + 162945212 162945252 41 CTGTCCTAGGAGCACAACGTCCGAGAAATGCTCAGCTTGAC CTGTCCTAGGAGCACAACGTCTGAGAAATGCTCAGCTTGAC < 41bp 0.537501179687829 0.746029579347011 0.27336848 0.08270246 prediction 0.417056799318364 Functional Gain - MAT2B ENSG00000038274 CDS Human protein_coding chr5:162945232 chr5:162945233 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_125400 0 0 1 0 1 MAT2B chr5:162945199 3'AG 162945199 Downstream 35bp
chr10 135160923 135160923 1 + T C LAML 135160921 + 135160901 135160941 41 ACAGAGACGCGGACCCCAGACATGAGGAGGTAATGCCACCA ACAGAGACGCGGACCCCAGACACGAGGAGGTAATGCCACCA < 41bp 0.536501862864039 0.745029807408774 0.54721993 0.3974213 prediction 0.41705588908947 Functional Gain - PRAP1 ENSG00000165828 CDS Human protein_coding chr10:135160921 chr10:135160923 nonsynonymous SNV 0.078 1 23 hm5C_associated_SNPs_125401 0 0 0 0 1 PRAP1 chr10:135160929 5'GT 135160929 Upstream 7bp
chr14 73406582 73406582 1 + T G rs61746594 73406578 + 73406558 73406598 41 TGACGAGTCTCCGTCAACCTCGTCTGGCACAGCTGGGACCT TGACGAGTCTCCGTCAACCTCGTCGGGCACAGCTGGGACCT < 41bp 0.522493668007201 0.731013134117856 0.09976965 0.2143187 prediction 0.417038932221311 Functional Gain - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73406578 chr14:73406582 synonymous SNV . 0 25 hm5C_associated_SNPs_125404 0 0 0 0 2 DCAF4 chr14:73406510 3'AG 73406510 Downstream 73bp
chr14 73406582 73406582 1 + T G rs61746594 73406578 + 73406558 73406598 41 TGACGAGTCTCCGTCAACCTCGTCTGGCACAGCTGGGACCT TGACGAGTCTCCGTCAACCTCGTCGGGCACAGCTGGGACCT < 41bp 0.522493668007201 0.731013134117856 0.09976965 0.2143187 prediction 0.417038932221311 Functional Gain - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73406578 chr14:73406582 synonymous SNV . 0 25 hm5C_associated_SNPs_125404 0 0 0 0 2 DCAF4 chr14:73406610 5'GT 73406610 Upstream 29bp
chr4 79512732 79512732 1 + C T rs140470799 79512731 + 79512711 79512751 41 TCTTGGAGATGACATTAGTTCCGAAACATCTGGTGACTTCC TCTTGGAGATGACATTAGTTCTGAAACATCTGGTGACTTCC < 41bp 0.45228577108562 0.708512337354695 0.26350325 0.2016527 prediction 0.41702467470939 Functional Gain - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79512731 chr4:79512732 synonymous SNV . 0 22 hm5C_associated_SNPs_125406 0 0 0 0 2 ANXA3 chr4:79512698 3'AG 79512698 Downstream 35bp
chr4 79512732 79512732 1 + C T rs140470799 79512731 + 79512711 79512751 41 TCTTGGAGATGACATTAGTTCCGAAACATCTGGTGACTTCC TCTTGGAGATGACATTAGTTCTGAAACATCTGGTGACTTCC < 41bp 0.45228577108562 0.708512337354695 0.26350325 0.2016527 prediction 0.41702467470939 Functional Gain - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79512731 chr4:79512732 synonymous SNV . 0 22 hm5C_associated_SNPs_125406 0 0 0 0 2 ANXA3 chr4:79512777 5'GT 79512777 Upstream 46bp
chr3 111718394 111718394 1 + T C LUAD 111718392 + 111718372 111718412 41 ATCCTGCAGTGCGCCGAGGACATAGAGCACCCGCCCCCCGG ATCCTGCAGTGCGCCGAGGACACAGAGCACCCGCCCCCCGG < 41bp 0.535518515041325 0.744030044229501 0.16748533 0.18790296 prediction 0.417023058376353 Functional Gain - TAGLN3 ENSG00000144834 CDS Human protein_coding chr3:111718392 chr3:111718394 nonsynonymous SNV 0.981 2 23 hm5C_associated_SNPs_125407 0 0 0 0 1 TAGLN3 chr3:111718449 5'GT 111718449 Upstream 56bp
chr19 40485783 40485783 1 + C T BLCA 40485782 + 40485762 40485802 41 AAGTATCTGGGTGAGGGCCCCCGCATGGTCCGGGATGTGTT AAGTATCTGGGTGAGGGCCCCTGCATGGTCCGGGATGTGTT < 41bp 0.640158814178031 0.848662594252704 0.19079798 0.5596232 prediction 0.417007560149347 Functional Gain - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40485782 chr19:40485783 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_125409 0 0 1 0 1 PSMC4 chr19:40485724 3'AG 40485724 Downstream 60bp
chr1 170955724 170955724 1 + C A STAD 170955720 + 170955700 170955740 41 AGAGAGTAGGGCAAACCTTACTGCCTCCCTTGCTGACTGAC AGAGAGTAGGGCAAACCTTACTGCATCCCTTGCTGACTGAC < 41bp 0.287501532744719 0.708503122125519 0.14782494 0.24906626 prediction 0.417006244251037 Functional Gain - MROH9 ENSG00000117501 CDS Human protein_coding chr1:170955720 chr1:170955724 nonsynonymous SNV 0.004 4 25 hm5C_associated_SNPs_125410 0 0 0 0 1 MROH9 chr1:170955702 3'AG 170955702 Downstream 23bp
chr16 19580820 19580820 1 + C G rs146118670 19580819 + 19580799 19580839 41 GTCCTCCTCCTCCTCCAGCTCCGTGGTGGACCCGCTGAGCA GTCCTCCTCCTCCTCCAGCTCGGTGGTGGACCCGCTGAGCA < 41bp 0.381056198493471 0.708502767957737 0.52571464 0.8623762 prediction 0.417005535915473 Functional Gain - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19580819 chr16:19580820 synonymous SNV . 0 22 hm5C_associated_SNPs_125411 0 0 0 0 2 C16orf62 chr16:19580746 3'AG 19580746 Downstream 75bp
chr16 19580820 19580820 1 + C G rs146118670 19580819 + 19580799 19580839 41 GTCCTCCTCCTCCTCCAGCTCCGTGGTGGACCCGCTGAGCA GTCCTCCTCCTCCTCCAGCTCGGTGGTGGACCCGCTGAGCA < 41bp 0.381056198493471 0.708502767957737 0.52571464 0.8623762 prediction 0.417005535915473 Functional Gain - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19580819 chr16:19580820 synonymous SNV . 0 22 hm5C_associated_SNPs_125411 0 0 0 0 2 C16orf62 chr16:19580913 5'GT 19580913 Upstream 94bp
chr14 75201605 75201605 1 + C T UCEC 75201604 + 75201584 75201624 41 GATACAACATTGAACGGATGCCAGATGATTATGGAGCCCCT GATACAACATTGAACGGATGCTAGATGATTATGGAGCCCCT < 41bp 0.588268277808291 0.796770109955882 0.4276606 0.53204346 prediction 0.417003664295183 Functional Gain - FCF1 ENSG00000119616 CDS Human protein_coding chr14:75201604 chr14:75201605 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_125412 0 0 1 2 1 FCF1 chr14:75201585 3'AG 75201585 Downstream 21bp
chr1 205041630 205041630 1 + C A LIHC 205041626 + 205041606 205041646 41 GGCAGCTCCGCGGCGACCTCCTGGCAACATCTCCTGGACTT GGCAGCTCCGCGGCGACCTCCTGGAAACATCTCCTGGACTT < 41bp 0.285414593669905 0.708501641858743 0.0965676 0.30963498 prediction 0.417003283717487 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205041626 chr1:205041630 synonymous SNV . 0 25 hm5C_associated_SNPs_125413 0 0 0 0 1 CNTN2 chr1:205041611 3'AG 205041611 Downstream 20bp
chr8 98973693 98973693 1 + C T rs539837200 98973692 + 98973672 98973712 41 AGCAGCTCTGTGTGAATGTGCCGGGCTCCTTCGTCTGCCAG AGCAGCTCTGTGTGAATGTGCTGGGCTCCTTCGTCTGCCAG < 41bp 0.46378141780967 0.70849946905292 0.8950319 0.5625083 prediction 0.416998938105841 Functional Gain - MATN2 ENSG00000132561 CDS Human protein_coding chr8:98973692 chr8:98973693 nonsynonymous SNV 0.926 1 22 hm5C_associated_SNPs_125414 0 0 0 0 2 MATN2 chr8:98973636 3'AG 98973636 Downstream 58bp
chr8 98973693 98973693 1 + C T rs539837200 98973692 + 98973672 98973712 41 AGCAGCTCTGTGTGAATGTGCCGGGCTCCTTCGTCTGCCAG AGCAGCTCTGTGTGAATGTGCTGGGCTCCTTCGTCTGCCAG < 41bp 0.46378141780967 0.70849946905292 0.8950319 0.5625083 prediction 0.416998938105841 Functional Gain - MATN2 ENSG00000132561 CDS Human protein_coding chr8:98973692 chr8:98973693 nonsynonymous SNV 0.926 1 22 hm5C_associated_SNPs_125414 0 0 0 0 2 MATN2 chr8:98973758 5'GT 98973758 Upstream 66bp
chr4 90816672 90816672 1 + C G LUSC 90816671 + 90816651 90816691 41 CGAGCCCCACGGGAAACATACCTCAGCCGGGGTGACAGCAG CGAGCCCCACGGGAAACATACGTCAGCCGGGGTGACAGCAG < 41bp 0.400498134277314 0.708494564819884 0.087522686 0.28096026 prediction 0.416989129639768 Functional Gain - MMRN1 ENSG00000138722 CDS Human protein_coding chr4:90816671 chr4:90816672 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_125416 0 0 0 0 1 MMRN1 chr4:90816745 5'GT 90816745 Upstream 74bp
chr1 204951051 204951051 1 + C A LUAD 204951050 + 204951030 204951070 41 TCGCTACGTGGTGGGGCAGACCCCAGTCTACGTGCCCTATG TCGCTACGTGGTGGGGCAGACACCAGTCTACGTGCCCTATG < 41bp 0.477643848281173 0.708481719705661 0.25795573 0.36523932 prediction 0.416963439411322 Functional Gain - NFASC ENSG00000163531 CDS Human protein_coding chr1:204951050 chr1:204951051 synonymous SNV . 0 22 hm5C_associated_SNPs_125422 0 0 0 0 1 NFASC chr1:204951148 5'GT 204951148 Upstream 98bp
chr1 160106106 160106106 1 + C T SKCM 160106105 + 160106085 160106125 41 AAGCGGCAGCCACGAAACTCCCAGACGGACAAGCTGGTGAA AAGCGGCAGCCACGAAACTCCTAGACGGACAAGCTGGTGAA < 41bp 0.432963884997243 0.708477305860971 0.45266822 0.40264297 prediction 0.416954611721943 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160106105 chr1:160106106 stopgain 0.381 0 22 hm5C_associated_SNPs_125424 0 0 0 0 2 ATP1A2 chr1:160106037 3'AG 160106037 Downstream 70bp
chr1 160106106 160106106 1 + C T SKCM 160106105 + 160106085 160106125 41 AAGCGGCAGCCACGAAACTCCCAGACGGACAAGCTGGTGAA AAGCGGCAGCCACGAAACTCCTAGACGGACAAGCTGGTGAA < 41bp 0.432963884997243 0.708477305860971 0.45266822 0.40264297 prediction 0.416954611721943 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160106105 chr1:160106106 stopgain 0.381 0 22 hm5C_associated_SNPs_125424 0 0 0 0 2 ATP1A2 chr1:160106160 5'GT 160106160 Upstream 55bp
chr3 16217179 16217179 1 + C A HNSC 16217178 + 16217158 16217198 41 TCCCCCTCCAGAGGGCTCTGCCCGAGGTGCGGCACCCACTG TCCCCCTCCAGAGGGCTCTGCACGAGGTGCGGCACCCACTG < 41bp 0.618168855767636 0.826639946623935 0.85455215 0.5442818 prediction 0.416942181712598 Functional Gain - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16217178 chr3:16217179 nonsynonymous SNV 0.815 4 22 hm5C_associated_SNPs_125426 0 0 0 0 1 GALNT15 chr3:16217197 5'GT 16217197 Upstream 19bp
chr1 101004024 101004024 1 + C G rs6675102 101004023 + 101004003 101004043 41 TATTTCCCGGCATCCCTCCCCCTGAGACACCGGCTAAGGAC TATTTCCCGGCATCCCTCCCCGTGAGACACCGGCTAAGGAC < 41bp 0.453497543014834 0.70846581726619 0.18662116 0.40811074 prediction 0.41693163453238 Functional Gain - GPR88 ENSG00000181656 UTR5 Human protein_coding chr1:101004023 chr1:101004024 . . 0 22 hm5C_associated_SNPs_125428 0 0 0 0 1 GPR88 chr1:101004058 5'GT 101004058 Upstream 35bp
chr22 31013429 31013429 1 + C T COAD 31013428 + 31013408 31013448 41 ACAGTCCATCTCTGTTCTGGCCGGGTCCACCGTGGAAGATG ACAGTCCATCTCTGTTCTGGCTGGGTCCACCGTGGAAGATG < 41bp 0.467508601211995 0.708461018125856 0.42265737 0.21662822 prediction 0.416922036251713 Functional Gain - TCN2 ENSG00000185339 CDS Human protein_coding chr22:31013428 chr22:31013429 synonymous SNV . 0 22 hm5C_associated_SNPs_125430 0 0 0 0 1 TCN2 chr22:31013482 5'GT 31013482 Upstream 54bp
chr1 113616189 113616189 1 + T A BRCA 113616185 + 113616165 113616205 41 CCTGCTCCTGCCGCATTCCTCTCCTGGACTGCAGTCGCAGG CCTGCTCCTGCCGCATTCCTCTCCAGGACTGCAGTCGCAGG < 41bp 0.667544905401155 0.876000083565971 0.25292134 0.9465207 prediction 0.416910356329631 Functional Gain - LRIG2 ENSG00000198799 CDS Human protein_coding chr1:113616185 chr1:113616189 nonsynonymous SNV 0.763 3 25 hm5C_associated_SNPs_125432 0 0 1 0 1 LRIG2 chr1:113616267 5'GT 113616267 Upstream 79bp
chr19 760015 760015 1 + C T UCEC 760014 + 759994 760034 41 TCCAGTGGACAGTGCTCCTCCCGGGCAGAGAAAGAAGGAGC TCCAGTGGACAGTGCTCCTCCTGGGCAGAGAAAGAAGGAGC < 41bp 0.467910148487254 0.708453474226993 0.38251695 0.22094372 prediction 0.416906948453986 Functional Gain - MISP ENSG00000099812 CDS Human protein_coding chr19:760014 chr19:760015 synonymous SNV . 0 22 hm5C_associated_SNPs_125434 0 0 0 0 1 MISP chr19:760039 5'GT 760039 Upstream 25bp
chrX 22095667 22095667 1 + T A LGG 22095665 + 22095645 22095685 41 CACCTTTCCGCTGGCCCGTGCTTGAATCTAATATTGGCCCT CACCTTTCCGCTGGCCCGTGCTAGAATCTAATATTGGCCCT < 41bp 0.516290903557151 0.724743818046797 0.13098684 0.22321185 prediction 0.416905828979293 Functional Gain - PHEX ENSG00000102174 CDS Human protein_coding chrX:22095665 chrX:22095667 synonymous SNV . 0 23 hm5C_associated_SNPs_125435 0 0 0 0 1 PHEX chrX:22095594 3'AG 22095594 Downstream 74bp
chr11 113140930 113140930 1 - G T UCEC 113140931 - 113140911 113140951 41 CGATGGCCCCGGTGCTCAGGCCTGAGGTGGGGCTGCCGTTG CGATGGCCCCGGTGCTCAGGCATGAGGTGGGGCTGCCGTTG < 41bp 0.640040838384821 0.848493140460218 0.48024553 0.8482532 prediction 0.416904604150795 Functional Gain - NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113140931 chr11:113140930 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_125436 0 0 0 0 1 NCAM1 chr11:113140926 5'GT 113140926 Upstream 5bp
chr8 99169912 99169912 1 + C T rs145798300 99169911 + 99169891 99169931 41 TCTGAGGATAGTCGGGGAGGCCGGCGAGCTCCCGGCAGAGG TCTGAGGATAGTCGGGGAGGCTGGCGAGCTCCCGGCAGAGG < 41bp 0.48898355934299 0.708447628252712 0.8831301 0.82308507 prediction 0.416895256505424 Functional Gain - POP1 ENSG00000104356 CDS Human protein_coding chr8:99169911 chr8:99169912 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_125438 0 0 1 0 1 POP1 chr8:99169845 3'AG 99169845 Downstream 68bp
chr1 16091674 16091674 1 + C T SKCM 16091673 + 16091653 16091693 41 AGGCCCAGCCCCTGGACAACCCCTGGCAGAGCTGCAGCCAC AGGCCCAGCCCCTGGACAACCTCTGGCAGAGCTGCAGCCAC < 41bp 0.449692216276772 0.708446799329486 0.18288586 0.17332512 prediction 0.416893598658972 Functional Gain - FBLIM1 ENSG00000162458 CDS Human protein_coding chr1:16091673 chr1:16091674 nonsynonymous SNV 0.019 0 22 hm5C_associated_SNPs_125439 0 0 1 0 1 FBLIM1 chr1:16091728 5'GT 16091728 Upstream 55bp
chr19 17985510 17985510 1 + C T LUAD 17985509 + 17985489 17985529 41 CTGGGCGTCGCTCCTGTCCACCGGAATTATCTGCACCTTCT CTGGGCGTCGCTCCTGTCCACTGGAATTATCTGCACCTTCT < 41bp 0.609638329884614 0.818077754437004 0.4350575 0.76448095 prediction 0.41687884910478 Functional Gain - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17985509 chr19:17985510 synonymous SNV . 0 22 hm5C_associated_SNPs_125443 0 0 0 0 2 SLC5A5 chr19:17985473 3'AG 17985473 Downstream 38bp
chr19 17985510 17985510 1 + C T LUAD 17985509 + 17985489 17985529 41 CTGGGCGTCGCTCCTGTCCACCGGAATTATCTGCACCTTCT CTGGGCGTCGCTCCTGTCCACTGGAATTATCTGCACCTTCT < 41bp 0.609638329884614 0.818077754437004 0.4350575 0.76448095 prediction 0.41687884910478 Functional Gain - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17985509 chr19:17985510 synonymous SNV . 0 22 hm5C_associated_SNPs_125443 0 0 0 0 2 SLC5A5 chr19:17985540 5'GT 17985540 Upstream 31bp
chr3 13669371 13669371 1 + C A LUSC 13669367 + 13669347 13669387 41 CGATGGGCACGCACACCTGCCAGCCGGGCTTCTTGTGCCAG CGATGGGCACGCACACCTGCCAGCAGGGCTTCTTGTGCCAG < 41bp 0.279009340194608 0.708436770618428 0.4085947 0.39503866 prediction 0.416873541236856 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13669367 chr3:13669371 nonsynonymous SNV 0.499 1 25 hm5C_associated_SNPs_125444 0 0 0 0 2 FBLN2 chr3:13669332 3'AG 13669332 Downstream 40bp
chr3 13669371 13669371 1 + C A LUSC 13669367 + 13669347 13669387 41 CGATGGGCACGCACACCTGCCAGCCGGGCTTCTTGTGCCAG CGATGGGCACGCACACCTGCCAGCAGGGCTTCTTGTGCCAG < 41bp 0.279009340194608 0.708436770618428 0.4085947 0.39503866 prediction 0.416873541236856 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13669367 chr3:13669371 nonsynonymous SNV 0.499 1 25 hm5C_associated_SNPs_125444 0 0 0 0 2 FBLN2 chr3:13669469 5'GT 13669469 Upstream 99bp
chr19 42266085 42266085 1 + A G rs7246255 42266082 + 42266062 42266102 41 TATATGTGCCAAGCCCATAACTCAGCCACTGGCCTCAATAG TATATGTGCCAAGCCCATAACTCGGCCACTGGCCTCAATAG < 41bp 0.612011711721501 0.820446208006546 0.31429863 0.64326334 prediction 0.41686899257009 Functional Gain - CEACAM6 ENSG00000086548 CDS Human protein_coding chr19:42266082 chr19:42266085 synonymous SNV . 0 24 hm5C_associated_SNPs_125446 0 0 0 0 1 CEACAM6 chr19:42266131 5'GT 42266131 Upstream 47bp
chrX 130218985 130218985 1 + T A STAD 130218983 + 130218963 130219003 41 CTCAAGGAGTTTTTCCGTGACATGAAGGATTCTCTGCTGCC CTCAAGGAGTTTTTCCGTGACAAGAAGGATTCTCTGCTGCC < 41bp 0.494353996595787 0.708431905086321 0.10621256 0.18698654 prediction 0.416863810172643 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130218983 chrX:130218985 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_125448 0 0 0 0 2 ARHGAP36 chrX:130218888 3'AG 130218888 Downstream 98bp
chrX 130218985 130218985 1 + T A STAD 130218983 + 130218963 130219003 41 CTCAAGGAGTTTTTCCGTGACATGAAGGATTCTCTGCTGCC CTCAAGGAGTTTTTCCGTGACAAGAAGGATTCTCTGCTGCC < 41bp 0.494353996595787 0.708431905086321 0.10621256 0.18698654 prediction 0.416863810172643 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130218983 chrX:130218985 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_125448 0 0 0 0 2 ARHGAP36 chrX:130219038 5'GT 130219038 Upstream 54bp
chr8 8875838 8875838 1 + A G UCEC 8875835 + 8875815 8875855 41 AGACAGAGCTGATACCTTCCCTCAGGTACTAAAAAAAGTAA AGACAGAGCTGATACCTTCCCTCGGGTACTAAAAAAAGTAA < 41bp 0.485254585032407 0.708430792486928 0.060655504 0.08465344 prediction 0.416861584973856 Functional Gain - ERI1 ENSG00000104626 CDS Human protein_coding chr8:8875835 chr8:8875838 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_125449 0 0 1 0 2 ERI1 chr8:8875807 3'AG 8875807 Downstream 32bp
chr8 8875838 8875838 1 + A G UCEC 8875835 + 8875815 8875855 41 AGACAGAGCTGATACCTTCCCTCAGGTACTAAAAAAAGTAA AGACAGAGCTGATACCTTCCCTCGGGTACTAAAAAAAGTAA < 41bp 0.485254585032407 0.708430792486928 0.060655504 0.08465344 prediction 0.416861584973856 Functional Gain - ERI1 ENSG00000104626 CDS Human protein_coding chr8:8875835 chr8:8875838 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_125449 0 0 1 0 2 ERI1 chr8:8875916 5'GT 8875916 Upstream 79bp
chr2 3744966 3744966 1 + C T COAD 3744965 + 3744945 3744985 41 AGAATGGCATTCTCTTGGTTCCGGGTTGTGAATGGGCAGTT AGAATGGCATTCTCTTGGTTCTGGGTTGTGAATGGGCAGTT < 41bp 0.476062484347842 0.708428051861805 0.71702754 0.42278555 prediction 0.41685610372361 Functional Gain - ALLC ENSG00000151360 CDS Human protein_coding chr2:3744965 chr2:3744966 nonsynonymous SNV 0.314 2 22 hm5C_associated_SNPs_125451 0 0 0 0 2 ALLC chr2:3744938 3'AG 3744938 Downstream 29bp
chr2 3744966 3744966 1 + C T COAD 3744965 + 3744945 3744985 41 AGAATGGCATTCTCTTGGTTCCGGGTTGTGAATGGGCAGTT AGAATGGCATTCTCTTGGTTCTGGGTTGTGAATGGGCAGTT < 41bp 0.476062484347842 0.708428051861805 0.71702754 0.42278555 prediction 0.41685610372361 Functional Gain - ALLC ENSG00000151360 CDS Human protein_coding chr2:3744965 chr2:3744966 nonsynonymous SNV 0.314 2 22 hm5C_associated_SNPs_125451 0 0 0 0 2 ALLC chr2:3745046 5'GT 3745046 Upstream 81bp
chr1 168269680 168269680 1 + C T ESCA 168269679 + 168269659 168269699 41 GAAATCACCTAAGAGACGTACCGGAGGCTATCTCTGAGAGC GAAATCACCTAAGAGACGTACTGGAGGCTATCTCTGAGAGC < 41bp 0.45738758787536 0.708427994283474 0.7534232 0.40280542 prediction 0.416855988566948 Functional Gain - TBX19 ENSG00000143178 CDS Human protein_coding chr1:168269679 chr1:168269680 nonsynonymous SNV 0.036 1 22 hm5C_associated_SNPs_125452 0 0 1 0 2 TBX19 chr1:168269660 3'AG 168269660 Downstream 21bp
chr1 168269680 168269680 1 + C T ESCA 168269679 + 168269659 168269699 41 GAAATCACCTAAGAGACGTACCGGAGGCTATCTCTGAGAGC GAAATCACCTAAGAGACGTACTGGAGGCTATCTCTGAGAGC < 41bp 0.45738758787536 0.708427994283474 0.7534232 0.40280542 prediction 0.416855988566948 Functional Gain - TBX19 ENSG00000143178 CDS Human protein_coding chr1:168269679 chr1:168269680 nonsynonymous SNV 0.036 1 22 hm5C_associated_SNPs_125452 0 0 1 0 2 TBX19 chr1:168269721 5'GT 168269721 Upstream 42bp
chr15 42631923 42631923 1 + C A PRAD 42631922 + 42631902 42631942 41 GAGCTGCTAGTGCGTTGGTACCAGGCTGGAGCCTACCAGCC GAGCTGCTAGTGCGTTGGTACAAGGCTGGAGCCTACCAGCC < 41bp 0.4476028622083 0.70842129670638 0.8733033 0.8369348 prediction 0.41684259341276 Functional Gain - GANC ENSG00000214013 CDS Human protein_coding chr15:42631922 chr15:42631923 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_125456 0 0 0 0 1 GANC chr15:42631867 3'AG 42631867 Downstream 57bp
chr5 147480112 147480112 1 + T C rs2303065 147480110 + 147480090 147480130 41 AGGGCCCAGATGGGAAAGTGCATGGCAACACCTGCTCCATG AGGGCCCAGATGGGAAAGTGCACGGCAACACCTGCTCCATG < 41bp 0.627142273346695 0.835552884780646 0.3615014 0.4282468 prediction 0.416821222867903 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147480110 chr5:147480112 synonymous SNV . 0 23 hm5C_associated_SNPs_125458 2 0 0 0 2 SPINK5 chr5:147480017 3'AG 147480017 Downstream 96bp
chr5 147480112 147480112 1 + T C rs2303065 147480110 + 147480090 147480130 41 AGGGCCCAGATGGGAAAGTGCATGGCAACACCTGCTCCATG AGGGCCCAGATGGGAAAGTGCACGGCAACACCTGCTCCATG < 41bp 0.627142273346695 0.835552884780646 0.3615014 0.4282468 prediction 0.416821222867903 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147480110 chr5:147480112 synonymous SNV . 0 23 hm5C_associated_SNPs_125458 2 0 0 0 2 SPINK5 chr5:147480144 5'GT 147480144 Upstream 33bp
chr8 104225197 104225197 1 + C A LUSC 104225196 + 104225176 104225216 41 GGTGTGCCCCGATCTACAGCCCCAGGTGGAATACCCAACCC GGTGTGCCCCGATCTACAGCCACAGGTGGAATACCCAACCC < 41bp 0.628655803697392 0.837066207705296 0.45111227 0.91259336 prediction 0.416820808015809 Functional Gain - BAALC ENSG00000164929 CDS Human protein_coding chr8:104225196 chr8:104225197 nonsynonymous SNV 0.872 1 22 hm5C_associated_SNPs_125459 0 0 0 0 1 BAALC chr8:104225147 3'AG 104225147 Downstream 51bp
chr2 176965269 176965269 1 + C A LUSC 176965268 + 176965248 176965288 41 AGGCCTGCCGTGGGGGGCGGCCCCGGGGAGGGCCCGCAAGA AGGCCTGCCGTGGGGGGCGGCACCGGGGAGGGCCCGCAAGA < 41bp 0.612750578661181 0.821160199178841 0.8377315 0.88369614 prediction 0.41681924103532 Functional Gain - HOXD12 ENSG00000170178 CDS Human protein_coding chr2:176965268 chr2:176965269 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_125460 0 0 0 0 1 HOXD12 chr2:176965250 3'AG 176965250 Downstream 20bp
chr5 170834720 170834720 1 + A G LAML 170834717 + 170834697 170834737 41 TTAATAGGGTGGTTCTCTTCCCAAAGTGGAAGCCAAATTCA TTAATAGGGTGGTTCTCTTCCCAGAGTGGAAGCCAAATTCA < 41bp 0.477845545824539 0.708405823040933 0.05505842 0.33035275 prediction 0.416811646081865 Functional Gain - NPM1 ENSG00000181163 CDS Human protein_coding chr5:170834717 chr5:170834720 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_125461 0 0 1 0 1 NPM1 chr5:170834778 5'GT 170834778 Upstream 59bp
chr8 17133946 17133946 1 + C T UCEC 17133945 + 17133925 17133965 41 GGTACAAGATGCCAGATGTCCCTGATGCATTTCCAGAACTC GGTACAAGATGCCAGATGTCCTTGATGCATTTCCAGAACTC < 41bp 0.4462895494944 0.708401585867582 0.06568366 0.13201481 prediction 0.416803171735163 Functional Gain - VPS37A ENSG00000155975 CDS Human protein_coding chr8:17133945 chr8:17133946 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_125464 0 0 1 0 2 VPS37A chr8:17133906 3'AG 17133906 Downstream 41bp
chr8 17133946 17133946 1 + C T UCEC 17133945 + 17133925 17133965 41 GGTACAAGATGCCAGATGTCCCTGATGCATTTCCAGAACTC GGTACAAGATGCCAGATGTCCTTGATGCATTTCCAGAACTC < 41bp 0.4462895494944 0.708401585867582 0.06568366 0.13201481 prediction 0.416803171735163 Functional Gain - VPS37A ENSG00000155975 CDS Human protein_coding chr8:17133945 chr8:17133946 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_125464 0 0 1 0 2 VPS37A chr8:17133976 5'GT 17133976 Upstream 31bp
chr11 34139840 34139840 1 + C T rs35674959 34139839 + 34139819 34139859 41 AGGCCCTGCCTCCCCAGACTCCGGTGAGTCTGTGCTGGGGT AGGCCCTGCCTCCCCAGACTCTGGTGAGTCTGTGCTGGGGT < 41bp 0.460096854396907 0.708400839261097 0.33317816 0.45647213 prediction 0.416801678522194 Functional Gain - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34139839 chr11:34139840 nonsynonymous SNV 0.597 1 22 hm5C_associated_SNPs_125465 0 0 1 0 1 NAT10 chr11:34139841 5'GT 34139841 Upstream 2bp
chr1 1459279 1459279 1 + C T UCEC 1459278 + 1459258 1459298 41 ACAAGGAACACCAAGAAGAACCGCAGCCTGTACAGGAACAT ACAAGGAACACCAAGAAGAACTGCAGCCTGTACAGGAACAT < 41bp 0.440236997841074 0.70838617440041 0.13054559 0.36937135 prediction 0.416772348800821 Functional Gain - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1459278 chr1:1459279 nonsynonymous SNV 0.007 0 22 hm5C_associated_SNPs_125470 0 0 1 0 2 ATAD3A chr1:1459219 3'AG 1459219 Downstream 61bp
chr1 1459279 1459279 1 + C T UCEC 1459278 + 1459258 1459298 41 ACAAGGAACACCAAGAAGAACCGCAGCCTGTACAGGAACAT ACAAGGAACACCAAGAAGAACTGCAGCCTGTACAGGAACAT < 41bp 0.440236997841074 0.70838617440041 0.13054559 0.36937135 prediction 0.416772348800821 Functional Gain - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1459278 chr1:1459279 nonsynonymous SNV 0.007 0 22 hm5C_associated_SNPs_125470 0 0 1 0 2 ATAD3A chr1:1459344 5'GT 1459344 Upstream 66bp
chr6 52052552 52052552 1 + C T SKCM 52052551 + 52052531 52052571 41 ACCGGAATACCAATACCAATCCCAAAAGGTCCTCAGATTAC ACCGGAATACCAATACCAATCTCAAAAGGTCCTCAGATTAC < 41bp 0.634114123358159 0.842499767843984 0.106042266 0.22900954 prediction 0.416771288971648 Functional Gain - IL17A ENSG00000112115 CDS Human protein_coding chr6:52052551 chr6:52052552 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_125471 0 0 0 0 1 IL17A chr6:52052603 5'GT 52052603 Upstream 52bp
chr15 25446344 25446344 1 + C A LUAD 25446340 + 25446320 25446360 41 GGCCCTGGGCCAGTATCCGTCAGCCTGGTGTCCAGCCCCTG GGCCCTGGGCCAGTATCCGTCAGCATGGTGTCCAGCCCCTG < 41bp 0.351744717634119 0.708382710374745 0.37724087 0.401083 prediction 0.41676542074949 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25446340 chr15:25446344 . . 0 25 hm5C_associated_SNPs_125473 0 0 0 0 2 SNHG14 chr15:25446283 3'AG 25446283 Downstream 62bp
chr15 25446344 25446344 1 + C A LUAD 25446340 + 25446320 25446360 41 GGCCCTGGGCCAGTATCCGTCAGCCTGGTGTCCAGCCCCTG GGCCCTGGGCCAGTATCCGTCAGCATGGTGTCCAGCCCCTG < 41bp 0.351744717634119 0.708382710374745 0.37724087 0.401083 prediction 0.41676542074949 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25446340 chr15:25446344 . . 0 25 hm5C_associated_SNPs_125473 0 0 0 0 2 SNHG14 chr15:25446413 5'GT 25446413 Upstream 70bp
chr21 48078690 48078690 1 + C T COAD 48078689 + 48078669 48078709 41 ATCGAGTCCATCCTGTATGCCCGGGATGCCTGGCTGAAGGA ATCGAGTCCATCCTGTATGCCTGGGATGCCTGGCTGAAGGA < 41bp 0.558381318142316 0.766762779152341 0.3939046 0.37825894 prediction 0.416762922020049 Functional Gain - PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48078689 chr21:48078690 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_125474 0 0 1 0 1 PRMT2 chr21:48078657 3'AG 48078657 Downstream 34bp
chr13 28752052 28752052 1 + A G UCEC 28752049 + 28752029 28752069 41 TGTTTAATGACTTTGGTGCCCTCAACATCTCTCAGAGACGA TGTTTAATGACTTTGGTGCCCTCGACATCTCTCAGAGACGA < 41bp 0.484594768958626 0.708379679555914 0.07862753 0.058921456 prediction 0.416759359111827 Functional Gain - PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752049 chr13:28752052 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_125476 0 0 1 0 2 PAN3 chr13:28752002 3'AG 28752002 Downstream 51bp
chr13 28752052 28752052 1 + A G UCEC 28752049 + 28752029 28752069 41 TGTTTAATGACTTTGGTGCCCTCAACATCTCTCAGAGACGA TGTTTAATGACTTTGGTGCCCTCGACATCTCTCAGAGACGA < 41bp 0.484594768958626 0.708379679555914 0.07862753 0.058921456 prediction 0.416759359111827 Functional Gain - PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752049 chr13:28752052 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_125476 0 0 1 0 2 PAN3 chr13:28752072 5'GT 28752072 Upstream 21bp
chr20 61461725 61461725 1 + C T COAD 61461724 + 61461704 61461744 41 TCTTCCAGGGGGCCCTCGGCCCACAAGGCCCTCCCGGAGCC TCTTCCAGGGGGCCCTCGGCCTACAAGGCCCTCCCGGAGCC < 41bp 0.636840297626423 0.845214371816758 0.0936321 0.8460167 prediction 0.41674814838067 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61461724 chr20:61461725 nonsynonymous SNV 0.981 2 22 hm5C_associated_SNPs_125479 0 0 1 0 2 COL9A3 chr20:61461712 3'AG 61461712 Downstream 14bp
chr20 61461725 61461725 1 + C T COAD 61461724 + 61461704 61461744 41 TCTTCCAGGGGGCCCTCGGCCCACAAGGCCCTCCCGGAGCC TCTTCCAGGGGGCCCTCGGCCTACAAGGCCCTCCCGGAGCC < 41bp 0.636840297626423 0.845214371816758 0.0936321 0.8460167 prediction 0.41674814838067 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61461724 chr20:61461725 nonsynonymous SNV 0.981 2 22 hm5C_associated_SNPs_125479 0 0 1 0 2 COL9A3 chr20:61461765 5'GT 61461765 Upstream 41bp
chr7 72416746 72416746 1 + C T SKCM 72416745 + 72416725 72416765 41 GGCTCGACAGCGACTGCAGGCCCGAAGGCAGCACACCCGCA GGCTCGACAGCGACTGCAGGCTCGAAGGCAGCACACCCGCA < 41bp 0.461317980741687 0.708372838503953 0.22403705 0.34428203 prediction 0.416745677007906 Functional Gain - POM121 ENSG00000196313 CDS Human protein_coding chr7:72416745 chr7:72416746 synonymous SNV . 0 22 hm5C_associated_SNPs_125481 0 0 0 0 1 POM121 chr7:72416676 3'AG 72416676 Downstream 71bp
chr7 64166787 64166787 1 + A G UCEC 64166784 + 64166764 64166804 41 AAAGTGACACTGAGAAGATACGGAAAATGTGAATATGAGAA AAAGTGACACTGAGAAGATACGGGAAATGTGAATATGAGAA < 41bp 0.549856640793596 0.758221461300237 0.066998065 0.2055344 prediction 0.416729641013282 Functional Gain - ZNF107 ENSG00000196247 CDS Human protein_coding chr7:64166784 chr7:64166787 synonymous SNV . 0 24 hm5C_associated_SNPs_125483 0 0 1 0 1 ZNF107 chr7:64166702 3'AG 64166702 Downstream 86bp
chr3 50323906 50323906 1 + C T UCEC 50323905 + 50323885 50323925 41 CTGCGCTGCCCCTGCAGACTCCGTGGCGCCAATGATGCCCA CTGCGCTGCCCCTGCAGACTCTGTGGCGCCAATGATGCCCA < 41bp 0.586559905744266 0.794915423525448 0.3893662 0.4951239 prediction 0.416711035562364 Functional Gain - LSMEM2 ENSG00000179564 CDS Human protein_coding chr3:50323905 chr3:50323906 synonymous SNV . 0 22 hm5C_associated_SNPs_125484 0 0 0 0 1 LSMEM2 chr3:50323902 3'AG 50323902 Downstream 5bp
chr1 160098612 160098612 1 + T C LUAD 160098610 + 160098590 160098630 41 TGTGGTTCGACAACCAAATCCATGAGGCTGACACCACCGAA TGTGGTTCGACAACCAAATCCACGAGGCTGACACCACCGAA < 41bp 0.662164586061426 0.87051652261472 0.13639116 0.12293914 prediction 0.416703873106588 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160098610 chr1:160098612 synonymous SNV . 0 23 hm5C_associated_SNPs_125487 0 0 0 0 1 ATP1A2 chr1:160098640 5'GT 160098640 Upstream 29bp
chr6 45296161 45296161 1 + C T UCEC 45296160 + 45296140 45296180 41 GGTTTTTAAATGGTTAATCTCCGCAGGTCACTACCAGCCAC GGTTTTTAAATGGTTAATCTCTGCAGGTCACTACCAGCCAC < 41bp 0.587122011588072 0.795469529657359 0.91483605 0.8132888 prediction 0.416695036138574 Functional Gain - RUNX2 ENSG00000124813 CDS Human protein_coding chr6:45296160 chr6:45296161 synonymous SNV . 0 22 hm5C_associated_SNPs_125488 0 0 0 0 2 RUNX2 chr6:45296197 5'GT 45296197 Upstream 37bp
chr6 45296161 45296161 1 + C T UCEC 45296160 + 45296140 45296180 41 GGTTTTTAAATGGTTAATCTCCGCAGGTCACTACCAGCCAC GGTTTTTAAATGGTTAATCTCTGCAGGTCACTACCAGCCAC < 41bp 0.587122011588072 0.795469529657359 0.91483605 0.8132888 prediction 0.416695036138574 Functional Gain - RUNX2 ENSG00000124813 CDS Human protein_coding chr6:45296160 chr6:45296161 synonymous SNV . 0 22 hm5C_associated_SNPs_125488 0 0 0 0 2 RUNX2;SUPT3H chr6:45296232 5'GT 45296232 Upstream 72bp
chr1 10684462 10684462 1 + C T SKCM 10684461 + 10684441 10684481 41 ATTCAGCAGCAGCAGAAGATCCAGGAGCTTGCCCACGAGCT ATTCAGCAGCAGCAGAAGATCTAGGAGCTTGCCCACGAGCT < 41bp 0.621693347620622 0.830039654979675 0.8556634 0.43275827 prediction 0.416692614718106 Functional Gain - PEX14 ENSG00000142655 CDS Human protein_coding chr1:10684461 chr1:10684462 stopgain 0.999 1 22 hm5C_associated_SNPs_125490 1 0 1 0 2 PEX14 chr1:10684397 3'AG 10684397 Downstream 66bp
chr1 10684462 10684462 1 + C T SKCM 10684461 + 10684441 10684481 41 ATTCAGCAGCAGCAGAAGATCCAGGAGCTTGCCCACGAGCT ATTCAGCAGCAGCAGAAGATCTAGGAGCTTGCCCACGAGCT < 41bp 0.621693347620622 0.830039654979675 0.8556634 0.43275827 prediction 0.416692614718106 Functional Gain - PEX14 ENSG00000142655 CDS Human protein_coding chr1:10684461 chr1:10684462 stopgain 0.999 1 22 hm5C_associated_SNPs_125490 1 0 1 0 2 PEX14 chr1:10684494 5'GT 10684494 Upstream 33bp
chr1 28285065 28285065 1 + A G COAD 28285062 + 28285042 28285082 41 GCTGGGAGCTCGAGTACCAGCTGACCGAGGCCTATGGGGTG GCTGGGAGCTCGAGTACCAGCTGGCCGAGGCCTATGGGGTG < 41bp 0.604665507155333 0.813006778010963 0.38772595 0.6530484 prediction 0.416682541711261 Functional Gain - SMPDL3B ENSG00000130768 CDS Human protein_coding chr1:28285062 chr1:28285065 nonsynonymous SNV 0.177 5 24 hm5C_associated_SNPs_125492 0 0 0 0 1 SMPDL3B chr1:28284987 3'AG 28284987 Downstream 79bp
chr2 33413881 33413881 1 + A G LIHC 33413878 + 33413858 33413898 41 CTACCCCGTGGCTGCTAAGACACAGCTTGGCCGGTGCTTCC CTACCCCGTGGCTGCTAAGACACGGCTTGGCCGGTGCTTCC < 41bp 0.471256190810477 0.708338462998863 0.11066836 0.34639263 prediction 0.416676925997726 Functional Gain - LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33413878 chr2:33413881 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_125493 0 0 1 0 1 LTBP1 chr2:33413918 5'GT 33413918 Upstream 38bp
chr19 39966971 39966971 1 + C T SKCM 39966970 + 39966950 39966990 41 GATGGTGAGGATGGCATTGTCCGTATGGACCTTGATGAGCA GATGGTGAGGATGGCATTGTCTGTATGGACCTTGATGAGCA < 41bp 0.585076316549424 0.793414774912992 0.11501706 0.52638984 prediction 0.416676916727135 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39966970 chr19:39966971 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_125494 0 0 1 0 1 SUPT5H chr19:39966896 3'AG 39966896 Downstream 76bp
chrX 21627269 21627269 1 + T G BRCA 21627267 + 21627247 21627287 41 CTTCTCAGTCTCAGTCTTCTCATGAGGAGTTTCGCCAGGAA CTTCTCAGTCTCAGTCTTCTCAGGAGGAGTTTCGCCAGGAA < 41bp 0.702824022133527 0.91115918246318 0.8725986 0.93156886 prediction 0.416670320659305 Functional Gain - CNKSR2 ENSG00000149970 CDS Human protein_coding chrX:21627267 chrX:21627269 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_125496 0 0 0 0 1 CNKSR2 chrX:21627189 3'AG 21627189 Downstream 81bp
chr11 13380077 13380077 1 + C T LUAD 13380076 + 13380056 13380096 41 ACCAACATGCAACGCAATGTCCAGGAAATTAGATAAACTTA ACCAACATGCAACGCAATGTCTAGGAAATTAGATAAACTTA < 41bp 0.459099512489114 0.708330593168796 0.014217973 0.00788635 prediction 0.416661186337592 Functional Gain - ARNTL ENSG00000133794 CDS Human protein_coding chr11:13380076 chr11:13380077 synonymous SNV . 0 22 hm5C_associated_SNPs_125499 0 0 0 0 2 ARNTL chr11:13379981 3'AG 13379981 Downstream 97bp
chr11 13380077 13380077 1 + C T LUAD 13380076 + 13380056 13380096 41 ACCAACATGCAACGCAATGTCCAGGAAATTAGATAAACTTA ACCAACATGCAACGCAATGTCTAGGAAATTAGATAAACTTA < 41bp 0.459099512489114 0.708330593168796 0.014217973 0.00788635 prediction 0.416661186337592 Functional Gain - ARNTL ENSG00000133794 CDS Human protein_coding chr11:13380076 chr11:13380077 synonymous SNV . 0 22 hm5C_associated_SNPs_125499 0 0 0 0 2 ARNTL chr11:13380138 5'GT 13380138 Upstream 62bp
chr7 55221782 55221782 1 + C T GBM 55221781 + 55221761 55221801 41 CTCTACAACCCCACCACGTACCAGATGGATGTGAACCCCGA CTCTACAACCCCACCACGTACTAGATGGATGTGAACCCCGA < 41bp 0.435791123408122 0.708330316082023 0.36773828 0.44017854 prediction 0.416660632164046 Functional Gain - EGFR ENSG00000146648 CDS Human protein_coding chr7:55221781 chr7:55221782 stopgain 0.918 1 22 hm5C_associated_SNPs_125501 0 0 1 0 2 EGFR chr7:55221704 3'AG 55221704 Downstream 79bp
chr7 55221782 55221782 1 + C T GBM 55221781 + 55221761 55221801 41 CTCTACAACCCCACCACGTACCAGATGGATGTGAACCCCGA CTCTACAACCCCACCACGTACTAGATGGATGTGAACCCCGA < 41bp 0.435791123408122 0.708330316082023 0.36773828 0.44017854 prediction 0.416660632164046 Functional Gain - EGFR ENSG00000146648 CDS Human protein_coding chr7:55221781 chr7:55221782 stopgain 0.918 1 22 hm5C_associated_SNPs_125501 0 0 1 0 2 EGFR chr7:55221845 5'GT 55221845 Upstream 64bp
chr1 23237025 23237025 1 + C T SKCM 23237024 + 23237004 23237044 41 AACACGCTAGACAAGATGATCCGCAATCCCAACAGCCTCAA AACACGCTAGACAAGATGATCTGCAATCCCAACAGCCTCAA < 41bp 0.430648345141741 0.708328488669326 0.19295275 0.13898611 prediction 0.416656977338652 Functional Gain - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23237024 chr1:23237025 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_125503 0 0 0 0 1 EPHB2 chr1:23237068 5'GT 23237068 Upstream 44bp
chr9 84605762 84605762 1 + C T ACC 84605761 + 84605741 84605781 41 ACTTTCGTCGACTGTTATGCCCAGACCCCGTCTGTCGGGTG ACTTTCGTCGACTGTTATGCCTAGACCCCGTCTGTCGGGTG < 41bp 0.598280562726738 0.80660892709397 0.12140739 0.13781697 prediction 0.416656728734463 Functional Gain - SPATA31D1 ENSG00000214929 CDS Human protein_coding chr9:84605761 chr9:84605762 nonsynonymous SNV 0.148 3 22 hm5C_associated_SNPs_125504 0 0 0 0 1 SPATA31D1 chr9:84605688 3'AG 84605688 Downstream 75bp
chr19 49438360 49438360 1 + C T KIRP 49438359 + 49438339 49438379 41 ATGAGGAGCTGGCCAAGGACCCGAGCGTGGGTGAGTGGCGA ATGAGGAGCTGGCCAAGGACCTGAGCGTGGGTGAGTGGCGA < 41bp 0.580988777750088 0.789316119847684 0.24772102 0.18861774 prediction 0.416654684195192 Functional Gain - DHDH ENSG00000104808 CDS Human protein_coding chr19:49438359 chr19:49438360 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_125505 0 0 0 0 1 DHDH chr19:49438368 5'GT 49438368 Upstream 9bp
chr7 74193722 74193722 1 + T G STAD 74193718 + 74193698 74193738 41 TCCCGCTGTCCCCACCTCCTCGACTTCTTCAAGGTGCGCCC TCCCGCTGTCCCCACCTCCTCGACGTCTTCAAGGTGCGCCC < 41bp 0.503925424448061 0.712249124218033 0.025655985 0.12707555 prediction 0.416647399539944 Functional Gain - NCF1 ENSG00000158517 CDS Human protein_coding chr7:74193718 chr7:74193722 nonsynonymous SNV 0.986 4 25 hm5C_associated_SNPs_125508 0 0 0 0 1 NCF1 chr7:74193768 5'GT 74193768 Upstream 47bp
chr19 50001239 50001239 1 + C A THCA 50001238 + 50001218 50001258 41 CGAGACTATCTGCACTACATCCGCAAGTACAACCGCTTCGA CGAGACTATCTGCACTACATCAGCAAGTACAACCGCTTCGA < 41bp 0.633776856132209 0.842090534436442 0.08225167 0.28209 prediction 0.416627356608467 Functional Gain - RPS11 ENSG00000142534 CDS Human protein_coding chr19:50001238 chr19:50001239 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_125510 0 0 1 0 2 RPS11 chr19:50001174 3'AG 50001174 Downstream 66bp
chr19 50001239 50001239 1 + C A THCA 50001238 + 50001218 50001258 41 CGAGACTATCTGCACTACATCCGCAAGTACAACCGCTTCGA CGAGACTATCTGCACTACATCAGCAAGTACAACCGCTTCGA < 41bp 0.633776856132209 0.842090534436442 0.08225167 0.28209 prediction 0.416627356608467 Functional Gain - RPS11 ENSG00000142534 CDS Human protein_coding chr19:50001238 chr19:50001239 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_125510 0 0 1 0 2 RPS11 chr19:50001303 5'GT 50001303 Upstream 65bp
chr11 65780867 65780867 1 + T A STAD 65780863 + 65780843 65780883 41 TCCTAAAGCACAACTGTGTGCAGATGTGATAAGTCCCCGAG TCCTAAAGCACAACTGTGTGCAGAAGTGATAAGTCCCCGAG < 41bp 0.668087185362629 0.876397886834263 0.7144725 0.84778565 prediction 0.416621402943269 Functional Gain - CST6 ENSG00000175315 CDS Human protein_coding chr11:65780863 chr11:65780867 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_125512 0 0 0 0 1 CST6 chr11:65780788 3'AG 65780788 Downstream 80bp
chr19 828280 828280 1 + C A LUSC 828279 + 828259 828299 41 GGCCGGAAGGCGAGGCCCCGCCAGTTCCCGTTCCTGGCCTC GGCCGGAAGGCGAGGCCCCGCAAGTTCCCGTTCCTGGCCTC < 41bp 0.626931994561494 0.835242555098567 0.38258022 0.33778402 prediction 0.416621121074146 Functional Gain - AZU1 ENSG00000172232 CDS Human protein_coding chr19:828279 chr19:828280 nonsynonymous SNV 0.005 2 22 hm5C_associated_SNPs_125513 0 0 0 0 1 AZU1 chr19:828230 3'AG 828230 Downstream 51bp
chr14 105223068 105223068 1 + C T STAD 105223067 + 105223047 105223087 41 CACCTGCTGGGGCTGCGGCTCCGTGGCCTGTACCCTGTGTG CACCTGCTGGGGCTGCGGCTCTGTGGCCTGTACCCTGTGTG < 41bp 0.489574101920425 0.708302595292099 0.2681576 0.21622366 prediction 0.416605190584199 Functional Gain - SIVA1 ENSG00000184990 CDS Human protein_coding chr14:105223067 chr14:105223068 synonymous SNV . 0 22 hm5C_associated_SNPs_125515 0 0 1 0 1 SIVA1 chr14:105223097 5'GT 105223097 Upstream 30bp
chr16 85690940 85690940 1 + C T rs138181231 85690939 + 85690919 85690959 41 CCGTCCAACACCCCTTGCATCCGGTGCCCACCCCACACCAC CCGTCCAACACCCCTTGCATCTGGTGCCCACCCCACACCAC < 41bp 0.459162926065017 0.708277933096424 0.46304554 0.23471159 prediction 0.416555866192847 Functional Gain - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85690939 chr16:85690940 nonsynonymous SNV 0.019 3 22 hm5C_associated_SNPs_125526 0 0 1 0 1 GSE1 chr16:85690883 3'AG 85690883 Downstream 58bp
chr14 76965244 76965244 1 + C T ESCA 76965243 + 76965223 76965263 41 ACCACCTGGAGGTTTTCCTTCCGCAGAGGGCAGGTACGCAA ACCACCTGGAGGTTTTCCTTCTGCAGAGGGCAGGTACGCAA < 41bp 0.60579167790846 0.814067918886431 0.5829179 0.60812646 prediction 0.416552481955943 Functional Gain - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76965243 chr14:76965244 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_125528 0 0 1 0 1 ESRRB chr14:76965255 5'GT 76965255 Upstream 12bp
chr16 3097538 3097538 1 + C A rs7198055 3097537 + 3097517 3097557 41 GTTCGCGGGGCTGCCGGAGACCGGCCGCATGGGTAGGTGGC GTTCGCGGGGCTGCCGGAGACAGGCCGCATGGGTAGGTGGC < 41bp 0.438919314757921 0.708268097420542 0.558405 0.75366247 prediction 0.416536194841084 Functional Gain - MMP25 ENSG00000008516 CDS Human protein_coding chr16:3097537 chr16:3097538 synonymous SNV . 0 22 hm5C_associated_SNPs_125531 0 0 0 0 1 MMP25 chr16:3097548 5'GT 3097548 Upstream 11bp
chr6 37138794 37138794 1 + A G LIHC 37138791 + 37138771 37138811 41 CGTGGAGAAGGACCGGATTTCCGACTGGGGAGAGCTGGTGA CGTGGAGAAGGACCGGATTTCCGGCTGGGGAGAGCTGGTGA < 41bp 0.460726763076611 0.708265221530155 0.16552979 0.3290974 prediction 0.41653044306031 Functional Gain - PIM1 ENSG00000137193 CDS Human protein_coding chr6:37138791 chr6:37138794 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_125532 0 0 1 0 2 PIM1 chr6:37138757 3'AG 37138757 Downstream 38bp
chr6 37138794 37138794 1 + A G LIHC 37138791 + 37138771 37138811 41 CGTGGAGAAGGACCGGATTTCCGACTGGGGAGAGCTGGTGA CGTGGAGAAGGACCGGATTTCCGGCTGGGGAGAGCTGGTGA < 41bp 0.460726763076611 0.708265221530155 0.16552979 0.3290974 prediction 0.41653044306031 Functional Gain - PIM1 ENSG00000137193 CDS Human protein_coding chr6:37138791 chr6:37138794 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_125532 0 0 1 0 2 PIM1 chr6:37138807 5'GT 37138807 Upstream 14bp
chr19 44764038 44764038 1 + T C rs562456061 44764036 + 44764016 44764056 41 AGTGCAGAAGCCGTTGCAACCTTGTGTACTTCCGCTGCAGG AGTGCAGAAGCCGTTGCAACCTCGTGTACTTCCGCTGCAGG < 41bp 0.585981910855476 0.794243512201218 0.26415563 0.38078526 prediction 0.416523202691484 Functional Gain - ZNF233 ENSG00000159915 CDS Human protein_coding chr19:44764036 chr19:44764038 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_125535 0 0 0 0 1 ZNF233 chr19:44764091 5'GT 44764091 Upstream 54bp
chr10 124671179 124671179 1 + A G LUSC 124671176 + 124671156 124671196 41 AAAGATGTTTGATCTCAGGACGAAGATCATGATCGGCATCG AAAGATGTTTGATCTCAGGACGAGGATCATGATCGGCATCG < 41bp 0.604991781584491 0.813252219545316 0.17119601 0.36606145 prediction 0.41652087592165 Functional Gain - FAM24A ENSG00000203795 CDS Human protein_coding chr10:124671176 chr10:124671179 nonsynonymous SNV 0.991 0 24 hm5C_associated_SNPs_125536 0 0 0 0 2 FAM24A chr10:124671149 3'AG 124671149 Downstream 31bp
chr10 124671179 124671179 1 + A G LUSC 124671176 + 124671156 124671196 41 AAAGATGTTTGATCTCAGGACGAAGATCATGATCGGCATCG AAAGATGTTTGATCTCAGGACGAGGATCATGATCGGCATCG < 41bp 0.604991781584491 0.813252219545316 0.17119601 0.36606145 prediction 0.41652087592165 Functional Gain - FAM24A ENSG00000203795 CDS Human protein_coding chr10:124671176 chr10:124671179 nonsynonymous SNV 0.991 0 24 hm5C_associated_SNPs_125536 0 0 0 0 2 FAM24A chr10:124671275 5'GT 124671275 Upstream 97bp
chr12 2997125 2997125 1 + C T GBM 2997124 + 2997104 2997144 41 GGAAGCTTGTTCCCAGCCTACCAGAAACACCAAAACCGGGC GGAAGCTTGTTCCCAGCCTACTAGAAACACCAAAACCGGGC < 41bp 0.597599259531677 0.805854439302582 0.21239454 0.124038935 prediction 0.41651035954181 Functional Gain - RHNO1 ENSG00000171792 CDS Human protein_coding chr12:2997124 chr12:2997125 stopgain 0.005 0 22 hm5C_associated_SNPs_125537 0 0 1 0 1 RHNO1 chr12:2997077 3'AG 2997077 Downstream 49bp
chr19 14040219 14040219 1 + T C STAD 14040216 + 14040196 14040236 41 GCCCGGCCCCTGCATAGCCTCAGTGTGCTGGCGTTTGACCA GCCCGGCCCCTGCATAGCCTCAGCGTGCTGGCGTTTGACCA < 41bp 0.498046637895721 0.708244342678317 0.23914343 0.47838026 prediction 0.416488685356635 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14040216 chr19:14040219 synonymous SNV . 0 24 hm5C_associated_SNPs_125543 0 0 0 0 2 CC2D1A chr19:14040192 3'AG 14040192 Downstream 28bp
chr19 14040219 14040219 1 + T C STAD 14040216 + 14040196 14040236 41 GCCCGGCCCCTGCATAGCCTCAGTGTGCTGGCGTTTGACCA GCCCGGCCCCTGCATAGCCTCAGCGTGCTGGCGTTTGACCA < 41bp 0.498046637895721 0.708244342678317 0.23914343 0.47838026 prediction 0.416488685356635 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14040216 chr19:14040219 synonymous SNV . 0 24 hm5C_associated_SNPs_125543 0 0 0 0 2 CC2D1A chr19:14040255 5'GT 14040255 Upstream 37bp
chr18 61232776 61232776 1 + C A LUAD 61232775 + 61232755 61232795 41 GATCCTGGAAATGAGGTACACCAAGGGGAAGCTCAGCATGT GATCCTGGAAATGAGGTACACAAAGGGGAAGCTCAGCATGT < 41bp 0.441091910425746 0.708234362586237 0.12064275 0.08504826 prediction 0.416468725172473 Functional Gain - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61232775 chr18:61232776 synonymous SNV . 0 22 hm5C_associated_SNPs_125548 0 0 0 0 2 SERPINB12 chr18:61232678 3'AG 61232678 Downstream 99bp
chr18 61232776 61232776 1 + C A LUAD 61232775 + 61232755 61232795 41 GATCCTGGAAATGAGGTACACCAAGGGGAAGCTCAGCATGT GATCCTGGAAATGAGGTACACAAAGGGGAAGCTCAGCATGT < 41bp 0.441091910425746 0.708234362586237 0.12064275 0.08504826 prediction 0.416468725172473 Functional Gain - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61232775 chr18:61232776 synonymous SNV . 0 22 hm5C_associated_SNPs_125548 0 0 0 0 2 SERPINB12 chr18:61232845 5'GT 61232845 Upstream 70bp
chr19 50957535 50957535 1 + C T HNSC 50957534 + 50957514 50957554 41 CCCTGCAGATGTCCCAGACCCCCCGGAGGCTGTGCGCATCA CCCTGCAGATGTCCCAGACCCTCCGGAGGCTGTGCGCATCA < 41bp 0.634508333047611 0.842739547741979 0.111899525 0.40682444 prediction 0.416462429388736 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957534 chr19:50957535 synonymous SNV . 0 22 hm5C_associated_SNPs_125549 0 0 0 0 2 MYBPC2 chr19:50957522 3'AG 50957522 Downstream 14bp
chr19 50957535 50957535 1 + C T HNSC 50957534 + 50957514 50957554 41 CCCTGCAGATGTCCCAGACCCCCCGGAGGCTGTGCGCATCA CCCTGCAGATGTCCCAGACCCTCCGGAGGCTGTGCGCATCA < 41bp 0.634508333047611 0.842739547741979 0.111899525 0.40682444 prediction 0.416462429388736 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957534 chr19:50957535 synonymous SNV . 0 22 hm5C_associated_SNPs_125549 0 0 0 0 2 MYBPC2 chr19:50957626 5'GT 50957626 Upstream 92bp
chr2 98350009 98350009 1 + T C LIHC 98350007 + 98349987 98350027 41 GCTGACCCTGTGGCCTTTAGCCTCAGAGACGAATCGACACC GCTGACCCTGTGGCCTTTAGCCCCAGAGACGAATCGACACC < 41bp 0.440561674870744 0.708221468482031 0.05839652 0.1491921 prediction 0.416442936964062 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98350007 chr2:98350009 synonymous SNV . 0 23 hm5C_associated_SNPs_125553 0 0 0 0 2 ZAP70 chr2:98350007 3'AG 98350007 Downstream 3bp
chr2 98350009 98350009 1 + T C LIHC 98350007 + 98349987 98350027 41 GCTGACCCTGTGGCCTTTAGCCTCAGAGACGAATCGACACC GCTGACCCTGTGGCCTTTAGCCCCAGAGACGAATCGACACC < 41bp 0.440561674870744 0.708221468482031 0.05839652 0.1491921 prediction 0.416442936964062 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98350007 chr2:98350009 synonymous SNV . 0 23 hm5C_associated_SNPs_125553 0 0 0 0 2 ZAP70 chr2:98350058 5'GT 98350058 Upstream 50bp
chr15 66821250 66821250 1 + A G rs11071896 66821247 + 66821227 66821267 41 TCAAGCGTCTTTTCAAAGTTCGGAGTGATCTTGATTTTGCT TCAAGCGTCTTTTCAAAGTTCGGGGTGATCTTGATTTTGCT < 41bp 0.595323824494163 0.803542403766554 0.48280206 0.8818192 prediction 0.416437158544782 Functional Gain - ZWILCH ENSG00000174442 CDS Human protein_coding chr15:66821247 chr15:66821250 nonsynonymous SNV 0.240 0 24 hm5C_associated_SNPs_125555 0 1 1 0 2 ZWILCH chr15:66821190 3'AG 66821190 Downstream 61bp
chr15 66821250 66821250 1 + A G rs11071896 66821247 + 66821227 66821267 41 TCAAGCGTCTTTTCAAAGTTCGGAGTGATCTTGATTTTGCT TCAAGCGTCTTTTCAAAGTTCGGGGTGATCTTGATTTTGCT < 41bp 0.595323824494163 0.803542403766554 0.48280206 0.8818192 prediction 0.416437158544782 Functional Gain - ZWILCH ENSG00000174442 CDS Human protein_coding chr15:66821247 chr15:66821250 nonsynonymous SNV 0.240 0 24 hm5C_associated_SNPs_125555 0 1 1 0 2 ZWILCH chr15:66821295 5'GT 66821295 Upstream 46bp
chr8 23112816 23112816 1 + C T UCEC 23112815 + 23112795 23112835 41 CTCGCCCCTCTCCTCCCACCCCGTGGTGGCCCTGTCAGAGC CTCGCCCCTCTCCTCCCACCCTGTGGTGGCCCTGTCAGAGC < 41bp 0.439620112171732 0.70821178623608 0.15406385 0.098691136 prediction 0.416423572472161 Functional Gain - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23112815 chr8:23112816 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_125561 0 0 1 0 1 CHMP7 chr8:23112760 3'AG 23112760 Downstream 57bp
chr12 85434284 85434284 1 + C T SKCM 85434283 + 85434263 85434303 41 TTTAGGATTCAGTTGAATTACCAGAATCAGTTCTTCACTGT TTTAGGATTCAGTTGAATTACTAGAATCAGTTCTTCACTGT < 41bp 0.470595256053935 0.708201297023665 0.099790365 0.054393917 prediction 0.41640259404733 Functional Gain - LRRIQ1 ENSG00000133640 CDS Human protein_coding chr12:85434283 chr12:85434284 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_125566 0 0 0 0 1 LRRIQ1 chr12:85434379 5'GT 85434379 Upstream 96bp
chr12 120078551 120078551 1 + C A rs147991893 120078550 + 120078530 120078570 41 CTGTGAGCGTGGAGGATGGACCTCATCCACACACACCCCAA CTGTGAGCGTGGAGGATGGACATCATCCACACACACCCCAA < 41bp 0.456661412818786 0.708198525531248 0.049550205 0.024560362 prediction 0.416397051062496 Functional Gain - TMEM233 ENSG00000248636 ncRNA_intronic Human protein_coding chr12:120078550 chr12:120078551 . . 0 22 hm5C_associated_SNPs_125567 0 0 0 0 1 TMEM233 chr12:120078504 3'AG 120078504 Downstream 48bp
chr12 69962837 69962837 1 + T A LUAD 69962833 + 69962813 69962853 41 GGGTAGCTGTTGTAGCTGTCCAGATAAAGACACTGTCCCAG GGGTAGCTGTTGTAGCTGTCCAGAAAAAGACACTGTCCCAG < 41bp 0.384994564381936 0.708190921240468 0.36857313 0.36402893 prediction 0.416381842480936 Functional Gain - FRS2 ENSG00000166225 CDS Human protein_coding chr12:69962833 chr12:69962837 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_125570 0 0 1 0 2 FRS2 chr12:69962785 3'AG 69962785 Downstream 53bp
chr12 69962837 69962837 1 + T A LUAD 69962833 + 69962813 69962853 41 GGGTAGCTGTTGTAGCTGTCCAGATAAAGACACTGTCCCAG GGGTAGCTGTTGTAGCTGTCCAGAAAAAGACACTGTCCCAG < 41bp 0.384994564381936 0.708190921240468 0.36857313 0.36402893 prediction 0.416381842480936 Functional Gain - FRS2 ENSG00000166225 CDS Human protein_coding chr12:69962833 chr12:69962837 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_125570 0 0 1 0 2 FRS2 chr12:69962876 5'GT 69962876 Upstream 40bp
chr14 73566094 73566094 1 + C T UCEC 73566093 + 73566073 73566113 41 TGGATTTTTTCACAGATTTTCCGCAGATTTCCAGTGGCCCC TGGATTTTTTCACAGATTTTCTGCAGATTTCCAGTGGCCCC < 41bp 0.456553252678022 0.708185322385879 0.29384068 0.18700457 prediction 0.416370644771757 Functional Gain - RBM25 ENSG00000119707 CDS Human protein_coding chr14:73566093 chr14:73566094 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_125571 0 0 1 0 2 RBM25 chr14:73566088 3'AG 73566088 Downstream 7bp
chr14 73566094 73566094 1 + C T UCEC 73566093 + 73566073 73566113 41 TGGATTTTTTCACAGATTTTCCGCAGATTTCCAGTGGCCCC TGGATTTTTTCACAGATTTTCTGCAGATTTCCAGTGGCCCC < 41bp 0.456553252678022 0.708185322385879 0.29384068 0.18700457 prediction 0.416370644771757 Functional Gain - RBM25 ENSG00000119707 CDS Human protein_coding chr14:73566093 chr14:73566094 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_125571 0 0 1 0 2 RBM25 chr14:73566141 5'GT 73566141 Upstream 48bp
chr2 33172789 33172789 1 + A G LIHC 33172786 + 33172766 33172806 41 CCCGGCAGCCGCCCCGTTCACCAAACAAGGCAGGCAAGTTG CCCGGCAGCCGCCCCGTTCACCAGACAAGGCAGGCAAGTTG < 41bp 0.478492699099684 0.70817595964211 0.24423131 0.7023314 prediction 0.416351919284221 Functional Gain - LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33172786 chr2:33172789 nonsynonymous SNV 0.964 0 24 hm5C_associated_SNPs_125575 0 0 0 0 1 LTBP1 chr2:33172885 5'GT 33172885 Upstream 97bp
chr6 134212890 134212890 1 + C A UCEC 134212889 + 134212869 134212909 41 GCCGGGAAACCCGAGAGTGACCTGAAAGAAGTGGTGACCGC GCCGGGAAACCCGAGAGTGACATGAAAGAAGTGGTGACCGC < 41bp 0.630390897605754 0.838564088722343 0.31502405 0.4259235 prediction 0.416346382233177 Functional Gain - TCF21 ENSG00000118526 CDS Human protein_coding chr6:134212889 chr6:134212890 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_125576 0 0 0 0 2 TCF21 chr6:134212851 3'AG 134212851 Downstream 40bp
chr6 134212890 134212890 1 + C A UCEC 134212889 + 134212869 134212909 41 GCCGGGAAACCCGAGAGTGACCTGAAAGAAGTGGTGACCGC GCCGGGAAACCCGAGAGTGACATGAAAGAAGTGGTGACCGC < 41bp 0.630390897605754 0.838564088722343 0.31502405 0.4259235 prediction 0.416346382233177 Functional Gain - TCF21 ENSG00000118526 CDS Human antisense chr6:134212889 chr6:134212890 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_125576 0 0 0 0 2 TCF21 chr6:134212948 5'GT 134212948 Upstream 59bp
chr7 140386944 140386944 1 + T C LIHC 140386941 + 140386921 140386961 41 CGTGCCATCTTCCCTCTGCCCGCTGCGACTGGTGCTGCTGG CGTGCCATCTTCCCTCTGCCCGCCGCGACTGGTGCTGCTGG < 41bp 0.554030391461508 0.762201553655587 0.26237452 0.13640451 prediction 0.416342324388157 Functional Gain - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140386941 chr7:140386944 nonsynonymous SNV 0.675 1 24 hm5C_associated_SNPs_125577 0 0 1 0 1 ADCK2 chr7:140387041 5'GT 140387041 Upstream 98bp
chr13 98086995 98086995 1 + C T BRCA 98086994 + 98086974 98087014 41 CTCGTCAACCAGCAGAGCTTCCAGGACATCAAGCCCATGCG CTCGTCAACCAGCAGAGCTTCTAGGACATCAAGCCCATGCG < 41bp 0.468297328776702 0.708169311129161 0.73462284 0.28522682 prediction 0.416338622258323 Functional Gain - RAP2A ENSG00000125249 CDS Human protein_coding chr13:98086994 chr13:98086995 stopgain 0.999 1 22 hm5C_associated_SNPs_125579 0 0 1 0 1 RAP2A chr13:98087038 5'GT 98087038 Upstream 44bp
chr12 113818599 113818599 1 + C T rs78496923 113818598 + 113818578 113818618 41 GCTGGTCTTCTCCTCCTACCCCGGCACCATCTTCTCCTGCG GCTGGTCTTCTCCTCCTACCCTGGCACCATCTTCTCCTGCG < 41bp 0.606140630862513 0.814306847368058 0.33364725 0.22887269 prediction 0.416332433011091 Functional Gain - PLBD2 ENSG00000151176 CDS Human protein_coding chr12:113818598 chr12:113818599 synonymous SNV . 0 22 hm5C_associated_SNPs_125581 0 0 1 0 2 PLBD2 chr12:113818550 3'AG 113818550 Downstream 50bp
chr12 113818599 113818599 1 + C T rs78496923 113818598 + 113818578 113818618 41 GCTGGTCTTCTCCTCCTACCCCGGCACCATCTTCTCCTGCG GCTGGTCTTCTCCTCCTACCCTGGCACCATCTTCTCCTGCG < 41bp 0.606140630862513 0.814306847368058 0.33364725 0.22887269 prediction 0.416332433011091 Functional Gain - PLBD2 ENSG00000151176 CDS Human protein_coding chr12:113818598 chr12:113818599 synonymous SNV . 0 22 hm5C_associated_SNPs_125581 0 0 1 0 2 PLBD2 chr12:113818647 5'GT 113818647 Upstream 49bp
chr9 130868647 130868647 1 + A G UCEC 130868644 + 130868624 130868664 41 TTGTGCAGGTCCTGAAGACCCGGATGGCGCTGCGGAAGACA TTGTGCAGGTCCTGAAGACCCGGGTGGCGCTGCGGAAGACA < 41bp 0.615544472542904 0.823707150017786 0.6302787 0.86951566 prediction 0.416325354949764 Functional Gain - SLC25A25 ENSG00000148339 CDS Human protein_coding chr9:130868644 chr9:130868647 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_125582 0 0 1 0 1 SLC25A25 chr9:130868632 3'AG 130868632 Downstream 16bp
chr8 68028220 68028220 1 + A G UCEC 68028217 + 68028197 68028237 41 ATGATACCACCTGAAAGACCCAGAATAGCTTTCCAGACACC ATGATACCACCTGAAAGACCCAGGATAGCTTTCCAGACACC < 41bp 0.471957761522735 0.708160704759226 0.36027163 0.8600958 prediction 0.416321409518453 Functional Gain - CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68028217 chr8:68028220 synonymous SNV . 0 24 hm5C_associated_SNPs_125584 0 0 1 0 1 CSPP1 chr8:68028149 3'AG 68028149 Downstream 72bp
chr9 140146505 140146505 1 + C G LUSC 140146504 + 140146484 140146524 41 CCTGGAAGTCCCCAGCCCCACCAGGTACCAGGTGCCGAGCC CCTGGAAGTCCCCAGCCCCACGAGGTACCAGGTGCCGAGCC < 41bp 0.687586992946226 0.895742072456284 0.2982902 0.8976741 prediction 0.416310159020117 Functional Gain - STPG3 ENSG00000197768 CDS Human protein_coding chr9:140146504 chr9:140146505 synonymous SNV . 0 22 hm5C_associated_SNPs_125586 0 0 0 0 3 STPG3 chr9:140146453 3'AG 140146453 Downstream 53bp
chr9 140146505 140146505 1 + C G LUSC 140146504 + 140146484 140146524 41 CCTGGAAGTCCCCAGCCCCACCAGGTACCAGGTGCCGAGCC CCTGGAAGTCCCCAGCCCCACGAGGTACCAGGTGCCGAGCC < 41bp 0.687586992946226 0.895742072456284 0.2982902 0.8976741 prediction 0.416310159020117 Functional Gain - STPG3 ENSG00000197768 CDS Human protein_coding chr9:140146504 chr9:140146505 synonymous SNV . 0 22 hm5C_associated_SNPs_125586 0 0 0 0 3 STPG3 chr9:140146507 5'GT 140146507 Upstream 3bp
chr9 140146505 140146505 1 + C G LUSC 140146504 + 140146484 140146524 41 CCTGGAAGTCCCCAGCCCCACCAGGTACCAGGTGCCGAGCC CCTGGAAGTCCCCAGCCCCACGAGGTACCAGGTGCCGAGCC < 41bp 0.687586992946226 0.895742072456284 0.2982902 0.8976741 prediction 0.416310159020117 Functional Gain - STPG3 ENSG00000197768 CDS Human protein_coding chr9:140146504 chr9:140146505 synonymous SNV . 0 22 hm5C_associated_SNPs_125586 0 0 0 0 3 STPG3 chr9:140146587 5'GT 140146587 Upstream 83bp
chr4 169799448 169799448 1 + A G rs62333013 169799445 + 169799425 169799465 41 CGCCTGCCACCCGCTTCGGCCACAGCCAGACGCCCGCGGCC CGCCTGCCACCCGCTTCGGCCACGGCCAGACGCCCGCGGCC < 41bp 0.458747561586644 0.708153623591717 0.8486637 0.89813757 prediction 0.416307247183434 Functional Gain - PALLD ENSG00000129116 CDS Human protein_coding chr4:169799445 chr4:169799448 nonsynonymous SNV 0.971 0 24 hm5C_associated_SNPs_125589 1 0 0 0 1 PALLD chr4:169799545 5'GT 169799545 Upstream 98bp
chr1 206647779 206647779 1 + C A GBM 206647778 + 206647758 206647798 41 GTCCTGCGGAAGCTGAACCACCAGAACATTGTCAAGCTCTT GTCCTGCGGAAGCTGAACCACAAGAACATTGTCAAGCTCTT < 41bp 0.435579260981585 0.708151878604359 0.0688971 0.1477611 prediction 0.416303757208718 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206647778 chr1:206647779 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_125590 0 0 0 0 1 IKBKE chr1:206647814 5'GT 206647814 Upstream 36bp
chr5 172261404 172261404 1 + C T rs529783894 172261403 + 172261383 172261423 41 GGCCTGCAGCGCTCCCACCCCCGGCGGCGGCACGATGCCCT GGCCTGCAGCGCTCCCACCCCTGGCGGCGGCACGATGCCCT < 41bp 0.528729395611496 0.736870528958752 0.7330749 0.35434425 prediction 0.416282266694511 Functional Gain - ERGIC1 ENSG00000113719 UTR5 Human protein_coding chr5:172261403 chr5:172261404 . . 0 22 hm5C_associated_SNPs_125595 0 0 1 0 1 ERGIC1 chr5:172261436 5'GT 172261436 Upstream 33bp
chr15 27182461 27182461 1 + T C UCEC 27182459 + 27182439 27182479 41 CAGACGGTGGGCACTGAGAACATCAGCACCAGCACAGGTGA CAGACGGTGGGCACTGAGAACACCAGCACCAGCACAGGTGA < 41bp 0.664481088161062 0.872616015303253 0.108213276 0.118607074 prediction 0.416269854284381 Functional Gain - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27182459 chr15:27182461 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_125596 0 0 0 0 1 GABRA5 chr15:27182475 5'GT 27182475 Upstream 15bp
chr12 111342478 111342478 1 + C A LUSC 111342477 + 111342457 111342497 41 GAAGGGGCAGAGGCTGAGATCCCGCCACCCTTCATCAACCC GAAGGGGCAGAGGCTGAGATCACGCCACCCTTCATCAACCC < 41bp 0.44229772950565 0.708130724080089 0.32243562 0.32179332 prediction 0.416261448160178 Functional Gain - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111342477 chr12:111342478 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_125598 0 0 0 0 1 CCDC63 chr12:111342392 3'AG 111342392 Downstream 87bp
chr7 36194769 36194769 1 + C T SKCM 36194768 + 36194748 36194788 41 CCGTGGAGAAGGCCAACAACCCCGGGGTGCGAGAGGTGGTG CCGTGGAGAAGGCCAACAACCTCGGGGTGCGAGAGGTGGTG < 41bp 0.623545611874404 0.831673774611298 0.43058673 0.67749715 prediction 0.416256325473788 Functional Gain - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36194768 chr7:36194769 nonsynonymous SNV 0.896 4 22 hm5C_associated_SNPs_125600 0 0 1 0 1 EEPD1 chr7:36194811 5'GT 36194811 Upstream 43bp
chr10 135369532 135369532 1 - T C rs3747881 135369535 - 135369515 135369555 41 TCAGATGCCAGAGCGGCTGGCAAAGGAGATTTGTGCCCTGG TCAGATGCCAGAGCGGCTGGCAAGGGAGATTTGTGCCCTGG < 41bp 0.605389876619876 0.813517759305056 0.5703348 0.81820226 prediction 0.416255765370359 Functional Gain - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135369535 chr10:135369532 nonsynonymous SNV 0.017 0 24 hm5C_associated_SNPs_125601 0 0 0 0 2 SYCE1 chr10:135369485 5'GT 135369485 Upstream 48bp
chr10 135369532 135369532 1 - T C rs3747881 135369535 - 135369515 135369555 41 TCAGATGCCAGAGCGGCTGGCAAAGGAGATTTGTGCCCTGG TCAGATGCCAGAGCGGCTGGCAAGGGAGATTTGTGCCCTGG < 41bp 0.605389876619876 0.813517759305056 0.5703348 0.81820226 prediction 0.416255765370359 Functional Gain - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135369535 chr10:135369532 nonsynonymous SNV 0.017 0 24 hm5C_associated_SNPs_125601 0 0 0 0 2 SYCE1 chr10:135369551 3'AG 135369551 Downstream 20bp
chr5 169446041 169446041 1 + C T SARC 169446040 + 169446020 169446060 41 CTTATCCCTGAGGCTGAGCTCCGGAAAGCCACCATACCAAT CTTATCCCTGAGGCTGAGCTCTGGAAAGCCACCATACCAAT < 41bp 0.466749693323483 0.708116552208725 0.2521746 0.14920783 prediction 0.41623310441745 Functional Gain - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169446040 chr5:169446041 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_125607 1 0 1 0 2 DOCK2 chr5:169445964 3'AG 169445964 Downstream 78bp
chr5 169446041 169446041 1 + C T SARC 169446040 + 169446020 169446060 41 CTTATCCCTGAGGCTGAGCTCCGGAAAGCCACCATACCAAT CTTATCCCTGAGGCTGAGCTCTGGAAAGCCACCATACCAAT < 41bp 0.466749693323483 0.708116552208725 0.2521746 0.14920783 prediction 0.41623310441745 Functional Gain - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169446040 chr5:169446041 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_125607 1 0 1 0 2 DOCK2 chr5:169446112 5'GT 169446112 Upstream 72bp
chr9 130982486 130982486 1 + C A LUAD 130982485 + 130982465 130982505 41 ATTGGAGTGGTGAACCGGAGCCAGAAGGACATTGATGGCAA ATTGGAGTGGTGAACCGGAGCAAGAAGGACATTGATGGCAA < 41bp 0.630090630108906 0.838203169105226 0.7179978 0.79204667 prediction 0.41622507799264 Functional Gain - DNM1 ENSG00000106976 CDS Human protein_coding chr9:130982485 chr9:130982486 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_125610 0 0 1 0 1 DNM1 chr9:130982460 3'AG 130982460 Downstream 27bp
chr1 1558792 1558792 1 + T C rs12755088 1558790 + 1558770 1558810 41 TCCCGAGCAGCCCGGCCCACCATGGACCCCTCTGCCCACAG TCCCGAGCAGCCCGGCCCACCACGGACCCCTCTGCCCACAG < 41bp 0.577599508449228 0.785707533032052 0.14998847 0.20680654 prediction 0.416216049165649 Functional Gain - MIB2 ENSG00000197530 CDS Human protein_coding chr1:1558790 chr1:1558792 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_125612 0 0 1 0 2 MIB2 chr1:1558769 3'AG 1558769 Downstream 24bp
chr1 1558792 1558792 1 + T C rs12755088 1558790 + 1558770 1558810 41 TCCCGAGCAGCCCGGCCCACCATGGACCCCTCTGCCCACAG TCCCGAGCAGCCCGGCCCACCACGGACCCCTCTGCCCACAG < 41bp 0.577599508449228 0.785707533032052 0.14998847 0.20680654 prediction 0.416216049165649 Functional Gain - MIB2 ENSG00000197530 CDS Human protein_coding chr1:1558790 chr1:1558792 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_125612 0 0 1 0 2 MIB2 chr1:1558862 5'GT 1558862 Upstream 71bp
chr19 14703168 14703168 1 + C T SKCM 14703167 + 14703147 14703187 41 ACAAGGACCTTCCTCCCAAGCCAGGTAAGAGGACTTTTTGG ACAAGGACCTTCCTCCCAAGCTAGGTAAGAGGACTTTTTGG < 41bp 0.473517420170023 0.708094866545222 0.9153811 0.32701945 prediction 0.416189733090444 Functional Gain - CLEC17A ENSG00000187912 CDS Human protein_coding chr19:14703167 chr19:14703168 nonsynonymous SNV 0.976 3 22 hm5C_associated_SNPs_125617 0 0 0 0 2 CLEC17A chr19:14703093 3'AG 14703093 Downstream 76bp
chr19 14703168 14703168 1 + C T SKCM 14703167 + 14703147 14703187 41 ACAAGGACCTTCCTCCCAAGCCAGGTAAGAGGACTTTTTGG ACAAGGACCTTCCTCCCAAGCTAGGTAAGAGGACTTTTTGG < 41bp 0.473517420170023 0.708094866545222 0.9153811 0.32701945 prediction 0.416189733090444 Functional Gain - CLEC17A ENSG00000187912 CDS Human protein_coding chr19:14703167 chr19:14703168 nonsynonymous SNV 0.976 3 22 hm5C_associated_SNPs_125617 0 0 0 0 2 CLEC17A chr19:14703170 5'GT 14703170 Upstream 3bp
chr22 42032532 42032532 1 + T G UCEC 42032528 + 42032508 42032548 41 GCCTCTGATCAGGTGCAAAACGAATTCTAGAGCTTGACCAG GCCTCTGATCAGGTGCAAAACGAAGTCTAGAGCTTGACCAG < 41bp 0.502007673637467 0.710088508519681 0.0796797 0.7471063 prediction 0.416161669764428 Functional Gain - XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42032528 chr22:42032532 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_125624 0 0 1 0 1 XRCC6 chr22:42032520 3'AG 42032520 Downstream 13bp
chr16 85946744 85946744 1 + T C LIHC 85946741 + 85946721 85946761 41 TCCCCTGACTGTGCAGCCTTCTGTGGACGATTACATGGGGA TCCCCTGACTGTGCAGCCTTCTGCGGACGATTACATGGGGA < 41bp 0.550441746239106 0.758510793405617 0.10641679 0.22106719 prediction 0.416138094333023 Functional Gain - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85946741 chr16:85946744 nonsynonymous SNV 0.704 1 24 hm5C_associated_SNPs_125627 0 0 0 0 2 IRF8 chr16:85946737 3'AG 85946737 Downstream 8bp
chr16 85946744 85946744 1 + T C LIHC 85946741 + 85946721 85946761 41 TCCCCTGACTGTGCAGCCTTCTGTGGACGATTACATGGGGA TCCCCTGACTGTGCAGCCTTCTGCGGACGATTACATGGGGA < 41bp 0.550441746239106 0.758510793405617 0.10641679 0.22106719 prediction 0.416138094333023 Functional Gain - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85946741 chr16:85946744 nonsynonymous SNV 0.704 1 24 hm5C_associated_SNPs_125627 0 0 0 0 2 IRF8 chr16:85946842 5'GT 85946842 Upstream 99bp
chr2 122519089 122519089 1 + A G UCEC 122519086 + 122519066 122519106 41 AGTGACTCGAGAAGCAGTTACAGAAATTCTTGGCAGTAAGT AGTGACTCGAGAAGCAGTTACAGGAATTCTTGGCAGTAAGT < 41bp 0.472174682856722 0.70806875814195 0.70018613 0.91253483 prediction 0.4161375162839 Functional Gain - TSN ENSG00000211460 CDS Human protein_coding chr2:122519086 chr2:122519089 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_125628 0 0 1 0 1 TSN chr2:122519100 5'GT 122519100 Upstream 12bp
chrX 135455133 135455133 1 + C T GBM 135455132 + 135455112 135455152 41 GATAGCAAATCTGACGGTGGCCGGGCTGGCTTTGGCTGTGC GATAGCAAATCTGACGGTGGCTGGGCTGGCTTTGGCTGTGC < 41bp 0.478302258861527 0.70806749199485 0.7750701 0.62040865 prediction 0.4161349839897 Functional Gain - ADGRG4 ENSG00000156920 CDS Human protein_coding chrX:135455132 chrX:135455133 synonymous SNV . 0 22 hm5C_associated_SNPs_125629 0 0 0 0 2 ADGRG4 chrX:135455061 3'AG 135455061 Downstream 73bp
chrX 135455133 135455133 1 + C T GBM 135455132 + 135455112 135455152 41 GATAGCAAATCTGACGGTGGCCGGGCTGGCTTTGGCTGTGC GATAGCAAATCTGACGGTGGCTGGGCTGGCTTTGGCTGTGC < 41bp 0.478302258861527 0.70806749199485 0.7750701 0.62040865 prediction 0.4161349839897 Functional Gain - ADGRG4 ENSG00000156920 CDS Human protein_coding chrX:135455132 chrX:135455133 synonymous SNV . 0 22 hm5C_associated_SNPs_125629 0 0 0 0 2 ADGRG4 chrX:135455223 5'GT 135455223 Upstream 91bp
chr8 99019735 99019735 1 + T A LUAD 99019733 + 99019713 99019753 41 ATTACTGCCTGCTGAGTGACCATGGTTGTGAATACTCCTGT ATTACTGCCTGCTGAGTGACCAAGGTTGTGAATACTCCTGT < 41bp 0.525806692624717 0.733871698899193 0.51070565 0.92223096 prediction 0.416130012548951 Functional Gain - MATN2 ENSG00000132561 CDS Human protein_coding chr8:99019733 chr8:99019735 nonsynonymous SNV 0.839 4 23 hm5C_associated_SNPs_125630 0 0 0 0 2 MATN2 chr8:99019707 3'AG 99019707 Downstream 29bp
chr8 99019735 99019735 1 + T A LUAD 99019733 + 99019713 99019753 41 ATTACTGCCTGCTGAGTGACCATGGTTGTGAATACTCCTGT ATTACTGCCTGCTGAGTGACCAAGGTTGTGAATACTCCTGT < 41bp 0.525806692624717 0.733871698899193 0.51070565 0.92223096 prediction 0.416130012548951 Functional Gain - MATN2 ENSG00000132561 CDS Human protein_coding chr8:99019733 chr8:99019735 nonsynonymous SNV 0.839 4 23 hm5C_associated_SNPs_125630 0 0 0 0 2 MATN2 chr8:99019829 5'GT 99019829 Upstream 95bp
chr1 149376937 149376937 1 + A G OV 149376934 + 149376914 149376954 41 AAATGTCCTTAAGCGCAGCCCTGAGTTGGAGCTTCAAGTGC AAATGTCCTTAAGCGCAGCCCTGGGTTGGAGCTTCAAGTGC < 41bp 0.58131217840794 0.789376784965342 0.1474174 0.27969265 prediction 0.416129213114804 Functional Gain - FCGR1CP ENSG00000253193 ncRNA_exonic Human other chr1:149376934 chr1:149376937 . . 0 24 hm5C_associated_SNPs_125631 0 0 0 0 1 FCGR1CP chr1:149376957 5'GT 149376957 Upstream 21bp
chr20 62724272 62724272 1 + C T SKCM 62724271 + 62724251 62724291 41 GCCGTGTGTGTCGGAGGGCTCCTGGGGAACTGCCTTGTCAT GCCGTGTGTGTCGGAGGGCTCTTGGGGAACTGCCTTGTCAT < 41bp 0.466980696042151 0.708049798684268 0.8830055 0.7768093 prediction 0.416099597368537 Functional Gain - OPRL1 ENSG00000125510 CDS Human protein_coding chr20:62724271 chr20:62724272 synonymous SNV . 0 22 hm5C_associated_SNPs_125635 0 0 0 0 2 OPRL1 chr20:62724291 5'GT 62724291 Upstream 20bp
chr20 62724272 62724272 1 + C T SKCM 62724271 + 62724251 62724291 41 GCCGTGTGTGTCGGAGGGCTCCTGGGGAACTGCCTTGTCAT GCCGTGTGTGTCGGAGGGCTCTTGGGGAACTGCCTTGTCAT < 41bp 0.466980696042151 0.708049798684268 0.8830055 0.7768093 prediction 0.416099597368537 Functional Gain - OPRL1 ENSG00000125510 CDS Human protein_coding chr20:62724271 chr20:62724272 synonymous SNV . 0 22 hm5C_associated_SNPs_125635 0 0 0 0 2 OPRL1 chr20:62724306 5'GT 62724306 Upstream 35bp
chr11 117061419 117061419 1 + C A SKCM 117061415 + 117061395 117061435 41 GATGGAGGGGCTGCTCAGTGCTTGCTATCATGTGTGCCCCA GATGGAGGGGCTGCTCAGTGCTTGATATCATGTGTGCCCCA < 41bp 0.284384750060065 0.708049404638398 0.053046167 0.073207766 prediction 0.416098809276797 Functional Gain - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117061415 chr11:117061419 stopgain 0.987 1 25 hm5C_associated_SNPs_125636 0 0 1 0 2 SIDT2 chr11:117061339 3'AG 117061339 Downstream 81bp
chr11 117061419 117061419 1 + C A SKCM 117061415 + 117061395 117061435 41 GATGGAGGGGCTGCTCAGTGCTTGCTATCATGTGTGCCCCA GATGGAGGGGCTGCTCAGTGCTTGATATCATGTGTGCCCCA < 41bp 0.284384750060065 0.708049404638398 0.053046167 0.073207766 prediction 0.416098809276797 Functional Gain - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117061415 chr11:117061419 stopgain 0.987 1 25 hm5C_associated_SNPs_125636 0 0 1 0 2 SIDT2 chr11:117061456 5'GT 117061456 Upstream 38bp
chr16 83994339 83994339 1 + C T SKCM 83994338 + 83994318 83994358 41 ATCCCCCACGTGGTTCTGGGCCGGAACCTCCCCGGGGGAGC ATCCCCCACGTGGTTCTGGGCTGGAACCTCCCCGGGGGAGC < 41bp 0.611493779842937 0.819536245782744 0.50508845 0.34206086 prediction 0.416084931879613 Functional Gain - OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83994338 chr16:83994339 nonsynonymous SNV 0.905 4 22 hm5C_associated_SNPs_125638 0 0 0 0 1 OSGIN1 chr16:83994365 5'GT 83994365 Upstream 27bp
chr7 76054467 76054467 1 + C T rs115350845 76054466 + 76054446 76054486 41 CAGCAAAGACCTTTTTGGCACCGGGAAGCTCATCAGGGCTG CAGCAAAGACCTTTTTGGCACTGGGAAGCTCATCAGGGCTG < 41bp 0.551793762512875 0.759835862371457 0.55451554 0.621783 prediction 0.416084199717164 Functional Gain - ZP3 ENSG00000188372 CDS Human protein_coding chr7:76054466 chr7:76054467 synonymous SNV . 0 22 hm5C_associated_SNPs_125639 0 0 1 0 1 ZP3 chr7:76054369 3'AG 76054369 Downstream 99bp
chr3 134920392 134920392 1 + C A BRCA 134920388 + 134920368 134920408 41 TCGCTGCTGGCATGAAGTACCTGGCTGAGATGAATTATGTG TCGCTGCTGGCATGAAGTACCTGGATGAGATGAATTATGTG < 41bp 0.302118898772821 0.708038419963379 0.8760439 0.9024317 prediction 0.416076839926758 Functional Gain - EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134920388 chr3:134920392 nonsynonymous SNV 0.959 1 25 hm5C_associated_SNPs_125640 0 0 0 0 1 EPHB1 chr3:134920316 3'AG 134920316 Downstream 77bp
chr2 7160637 7160637 1 + C T OV 7160636 + 7160616 7160656 41 ATCCCTGTCGGACTTGGTGCCCGGCGTCCACCTGCCAAGCT ATCCCTGTCGGACTTGGTGCCTGGCGTCCACCTGCCAAGCT < 41bp 0.458079073751511 0.708029171989961 0.8704257 0.6026529 prediction 0.416058343979922 Functional Gain - RNF144A ENSG00000151692 CDS Human protein_coding chr2:7160636 chr2:7160637 nonsynonymous SNV 0.965 4 22 hm5C_associated_SNPs_125644 0 0 1 0 1 RNF144A chr2:7160604 3'AG 7160604 Downstream 34bp
chr1 152484087 152484087 1 + C T SKCM 152484086 + 152484066 152484106 41 AATGCCCTCCCAAGTGTACTCCTAAGTGTCCTCCCAAGTGT AATGCCCTCCCAAGTGTACTCTTAAGTGTCCTCCCAAGTGT < 41bp 0.571707930644656 0.779736394596699 0.10799214 0.08597219 prediction 0.416056927904086 Functional Gain - LCE5A ENSG00000186207 CDS Human protein_coding chr1:152484086 chr1:152484087 nonsynonymous SNV 0.163 1 22 hm5C_associated_SNPs_125645 0 0 0 0 1 LCE5A chr1:152483990 3'AG 152483990 Downstream 98bp
chr19 7830561 7830561 1 + C T COAD 7830560 + 7830540 7830580 41 CTCCCTAAGTCAGGAACAATCCGAGCAAGACGCAATCTACC CTCCCTAAGTCAGGAACAATCTGAGCAAGACGCAATCTACC < 41bp 0.555399062253068 0.763425502342567 0.9058398 0.73250836 prediction 0.416052880178997 Functional Gain - CLEC4M ENSG00000104938 CDS Human protein_coding chr19:7830560 chr19:7830561 synonymous SNV . 0 22 hm5C_associated_SNPs_125647 0 0 0 0 2 CLEC4M chr19:7830503 3'AG 7830503 Downstream 59bp
chr19 7830561 7830561 1 + C T COAD 7830560 + 7830540 7830580 41 CTCCCTAAGTCAGGAACAATCCGAGCAAGACGCAATCTACC CTCCCTAAGTCAGGAACAATCTGAGCAAGACGCAATCTACC < 41bp 0.555399062253068 0.763425502342567 0.9058398 0.73250836 prediction 0.416052880178997 Functional Gain - CLEC4M ENSG00000104938 CDS Human protein_coding chr19:7830560 chr19:7830561 synonymous SNV . 0 22 hm5C_associated_SNPs_125647 0 0 0 0 2 CLEC4M chr19:7830524 3'AG 7830524 Downstream 38bp
chr7 138487680 138487680 1 + C T KIRC 138487679 + 138487659 138487699 41 CCACAAGCAGCCCGGTGCTGCCGCACAGGAGTGGACGAGTA CCACAAGCAGCCCGGTGCTGCTGCACAGGAGTGGACGAGTA < 41bp 0.608404291151118 0.816429308586543 0.07288632 0.24939162 prediction 0.416050034870848 Functional Gain - TMEM213 ENSG00000214128 CDS Human protein_coding chr7:138487679 chr7:138487680 nonsynonymous SNV 0.035 2 22 hm5C_associated_SNPs_125648 0 0 0 0 1 TMEM213 chr7:138487645 3'AG 138487645 Downstream 36bp
chr3 45637765 45637765 1 + A G rs114236922 45637762 + 45637742 45637782 41 GCGAGAGATGGATGCTCACCCGAAGGCTGATTACTTTGGTG GCGAGAGATGGATGCTCACCCGAGGGCTGATTACTTTGGTG < 41bp 0.456485866504585 0.708015390740795 0.70299757 0.90623224 prediction 0.41603078148159 Functional Gain - LIMD1 ENSG00000144791 CDS Human protein_coding chr3:45637762 chr3:45637765 nonsynonymous SNV 0.983 1 24 hm5C_associated_SNPs_125651 0 0 1 0 1 LIMD1 chr3:45637779 5'GT 45637779 Upstream 15bp
chr3 93758757 93758757 1 + T G STAD 93758754 + 93758734 93758774 41 GAACAGGAGCAGGCTGAACTCGATGGAACCAGTGGTCTGGC GAACAGGAGCAGGCTGAACTCGAGGGAACCAGTGGTCTGGC < 41bp 0.722523132283441 0.930538508904725 0.84093523 0.9438019 prediction 0.416030753242569 Functional Gain - ARL13B ENSG00000169379 CDS Human protein_coding chr3:93758754 chr3:93758757 nonsynonymous SNV 0.099 0 24 hm5C_associated_SNPs_125652 0 0 1 0 2 ARL13B chr3:93758724 3'AG 93758724 Downstream 34bp
chr3 93758757 93758757 1 + T G STAD 93758754 + 93758734 93758774 41 GAACAGGAGCAGGCTGAACTCGATGGAACCAGTGGTCTGGC GAACAGGAGCAGGCTGAACTCGAGGGAACCAGTGGTCTGGC < 41bp 0.722523132283441 0.930538508904725 0.84093523 0.9438019 prediction 0.416030753242569 Functional Gain - ARL13B ENSG00000169379 CDS Human protein_coding chr3:93758754 chr3:93758757 nonsynonymous SNV 0.099 0 24 hm5C_associated_SNPs_125652 0 0 1 0 2 ARL13B chr3:93758832 5'GT 93758832 Upstream 76bp
chr2 44539773 44539773 1 + T C rs144162964 44539770 + 44539750 44539790 41 TGACTTCGCGTTTGGGGAATCAGTATGTCAACGTGATGAAC TGACTTCGCGTTTGGGGAATCAGCATGTCAACGTGATGAAC < 41bp 0.546110017545408 0.754123831898955 0.23246738 0.3678748 prediction 0.416027628707095 Functional Gain - SLC3A1 ENSG00000138079 CDS Human protein_coding chr2:44539770 chr2:44539773 nonsynonymous SNV 0.758 4 24 hm5C_associated_SNPs_125653 1 0 0 0 1 SLC3A1 chr2:44539725 3'AG 44539725 Downstream 49bp
chr8 11660635 11660635 1 + C A rs371572514 11660631 + 11660611 11660651 41 ACGCGGCCGTCCTGGCTGACCTGTCCCTGCCCCCGCAAGCC ACGCGGCCGTCCTGGCTGACCTGTACCTGCCCCCGCAAGCC < 41bp 0.363419148233464 0.708013098989323 0.13151023 0.20718 prediction 0.416026197978646 Functional Gain - FDFT1 ENSG00000079459 UTR5 Human protein_coding chr8:11660631 chr8:11660635 . . 0 25 hm5C_associated_SNPs_125656 0 0 1 0 1 FDFT1 chr8:11660734 5'GT 11660734 Upstream 100bp
chr1 110256348 110256348 1 + A G CESC 110256345 + 110256325 110256365 41 AGAACCAGGTTATGGATAACCACATGGAGCTGGTCAGACTG AGAACCAGGTTATGGATAACCACGTGGAGCTGGTCAGACTG < 41bp 0.587093012518471 0.79510547443846 0.90563446 0.8303045 prediction 0.416024923839977 Functional Gain - GSTM5 ENSG00000134201 CDS Human protein_coding chr1:110256345 chr1:110256348 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_125657 0 0 1 0 2 GSTM5 chr1:110256283 3'AG 110256283 Downstream 66bp
chr1 110256348 110256348 1 + A G CESC 110256345 + 110256325 110256365 41 AGAACCAGGTTATGGATAACCACATGGAGCTGGTCAGACTG AGAACCAGGTTATGGATAACCACGTGGAGCTGGTCAGACTG < 41bp 0.587093012518471 0.79510547443846 0.90563446 0.8303045 prediction 0.416024923839977 Functional Gain - GSTM5 ENSG00000134201 CDS Human protein_coding chr1:110256345 chr1:110256348 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_125657 0 0 1 0 2 GSTM5 chr1:110256383 5'GT 110256383 Upstream 36bp
chr22 42172208 42172208 1 + C G BLCA 42172207 + 42172187 42172227 41 ATCCAAGTGGGCGGTCTTATCCGAGGCCACTTCCTGCTGAT ATCCAAGTGGGCGGTCTTATCGGAGGCCACTTCCTGCTGAT < 41bp 0.67722641977969 0.885238786185649 0.93961203 0.9540669 prediction 0.416024732811919 Functional Gain - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42172207 chr22:42172208 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_125658 0 0 0 1 1 MEI1 chr22:42172271 5'GT 42172271 Upstream 64bp
chr19 843626 843626 1 + T C COAD 843624 + 843604 843644 41 GCCGCGCACTGCCTGCGGGACATGTGAGCGGCCGCCTCCAC GCCGCGCACTGCCTGCGGGACACGTGAGCGGCCGCCTCCAC < 41bp 0.553288626392427 0.761300400888684 0.72301364 0.69213414 prediction 0.416023548992513 Functional Gain - PRTN3 ENSG00000196415 CDS Human protein_coding chr19:843624 chr19:843626 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_125659 0 0 0 0 1 PRTN3 chr19:843626 5'GT 843626 Upstream 1bp
chr1 207870955 207870955 1 + C A UCEC 207870951 + 207870931 207870971 41 TACAGCTGTGAGCCCGGCTACGACCTCAGAGGATCTACGTA TACAGCTGTGAGCCCGGCTACGACATCAGAGGATCTACGTA < 41bp 0.285457990276869 0.70801119309108 0.046641678 0.21253175 prediction 0.416022386182159 Functional Gain - CR1L ENSG00000197721 CDS Human protein_coding chr1:207870951 chr1:207870955 nonsynonymous SNV 0.007 3 25 hm5C_associated_SNPs_125660 0 0 0 0 1 CR1L chr1:207871024 5'GT 207871024 Upstream 70bp
chr11 605710 605710 1 + C T COAD 605709 + 605689 605729 41 GCCCGTGGCCAGGCCCGTCTCCGTGGGGCTTTCCAGGTGTG GCCCGTGGCCAGGCCCGTCTCTGTGGGGCTTTCCAGGTGTG < 41bp 0.468225362590201 0.708001274169798 0.86378443 0.3394301 prediction 0.416002548339596 Functional Gain - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:605709 chr11:605710 synonymous SNV . 0 22 hm5C_associated_SNPs_125665 0 0 1 0 1 PHRF1 chr11:605724 5'GT 605724 Upstream 15bp
chr8 38948816 38948816 1 + C T rs144750648 38948815 + 38948795 38948835 41 AAGCAAACCCTTCTAGACAGCCGGGGAGTGTTCCTCGACAT AAGCAAACCCTTCTAGACAGCTGGGGAGTGTTCCTCGACAT < 41bp 0.599720517352763 0.807719643998287 0.4361239 0.18741876 prediction 0.415998253291049 Functional Gain - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38948815 chr8:38948816 nonsynonymous SNV 0.800 2 22 hm5C_associated_SNPs_125667 0 0 1 0 2 ADAM9 chr8:38948778 3'AG 38948778 Downstream 39bp
chr8 38948816 38948816 1 + C T rs144750648 38948815 + 38948795 38948835 41 AAGCAAACCCTTCTAGACAGCCGGGGAGTGTTCCTCGACAT AAGCAAACCCTTCTAGACAGCTGGGGAGTGTTCCTCGACAT < 41bp 0.599720517352763 0.807719643998287 0.4361239 0.18741876 prediction 0.415998253291049 Functional Gain - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38948815 chr8:38948816 nonsynonymous SNV 0.800 2 22 hm5C_associated_SNPs_125667 0 0 1 0 2 ADAM9 chr8:38948865 5'GT 38948865 Upstream 50bp
chr8 22865619 22865619 1 + C T STAD 22865618 + 22865598 22865638 41 CCATTTGTGGAGAGCTCCACCCGGGAGGTAAGGCTGAGGAC CCATTTGTGGAGAGCTCCACCTGGGAGGTAAGGCTGAGGAC < 41bp 0.603985079422944 0.811980056549685 0.9090531 0.7320014 prediction 0.415989954253482 Functional Gain - RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22865618 chr8:22865619 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_125670 0 0 0 0 1 RHOBTB2 chr8:22865624 5'GT 22865624 Upstream 6bp
chr22 18650795 18650795 1 + A G UCEC 18650792 + 18650772 18650812 41 TTGATGTGGACTCAAAGCCCCTGAAGACACTGGTAAGGGGA TTGATGTGGACTCAAAGCCCCTGGAGACACTGGTAAGGGGA < 41bp 0.467738343337342 0.707994262042517 0.07848197 0.29710612 prediction 0.415988524085033 Functional Gain - USP18 ENSG00000184979 CDS Human protein_coding chr22:18650792 chr22:18650795 nonsynonymous SNV 0.994 0 24 hm5C_associated_SNPs_125671 0 0 0 0 1 USP18 chr22:18650803 5'GT 18650803 Upstream 9bp
chr16 3707329 3707329 1 + T C UCEC 3707326 + 3707306 3707346 41 ACACCACAGCTACACCCACGCACTGTGCCTATGACAGGTGA ACACCACAGCTACACCCACGCACCGTGCCTATGACAGGTGA < 41bp 0.525371957362826 0.733364655188889 0.6790358 0.37516016 prediction 0.415985395652126 Functional Gain - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707326 chr16:3707329 nonsynonymous SNV 0.260 4 24 hm5C_associated_SNPs_125672 0 0 1 0 1 DNASE1 chr16:3707342 5'GT 3707342 Upstream 14bp
chr17 46134798 46134798 1 + C T rs2229368 46134797 + 46134777 46134817 41 CCTCTTGTCTCCTCTTCTGACCGGGACAGAGTCACCATTTG CCTCTTGTCTCCTCTTCTGACTGGGACAGAGTCACCATTTG < 41bp 0.454669782629504 0.707991558737098 0.8144677 0.24624518 prediction 0.415983117474195 Functional Gain - NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46134797 chr17:46134798 synonymous SNV . 0 22 hm5C_associated_SNPs_125673 0 0 1 0 2 NFE2L1 chr17:46134706 3'AG 46134706 Downstream 93bp
chr17 46134798 46134798 1 + C T rs2229368 46134797 + 46134777 46134817 41 CCTCTTGTCTCCTCTTCTGACCGGGACAGAGTCACCATTTG CCTCTTGTCTCCTCTTCTGACTGGGACAGAGTCACCATTTG < 41bp 0.454669782629504 0.707991558737098 0.8144677 0.24624518 prediction 0.415983117474195 Functional Gain - NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46134797 chr17:46134798 synonymous SNV . 0 22 hm5C_associated_SNPs_125673 0 0 1 0 2 NFE2L1 chr17:46134864 5'GT 46134864 Upstream 67bp
chr7 48086161 48086161 1 + T C rs10233232 48086159 + 48086139 48086179 41 AGAGGGCCCTTCGACTTCGACATGAAAACAGTTTGGCAAAG AGAGGGCCCTTCGACTTCGACACGAAAACAGTTTGGCAAAG < 41bp 0.666628492969352 0.874616908634073 0.19473597 0.20298702 prediction 0.415976831329441 Functional Gain - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48086159 chr7:48086161 nonsynonymous SNV 0.880 0 23 hm5C_associated_SNPs_125674 0 0 0 0 1 C7orf57 chr7:48086213 5'GT 48086213 Upstream 53bp
chr16 22019639 22019639 1 + T C UCEC 22019637 + 22019617 22019657 41 GGGGAGATGGATAAACTGACCATCATCTCAGGATGTCTCTT GGGGAGATGGATAAACTGACCACCATCTCAGGATGTCTCTT < 41bp 0.637968451976597 0.845955777241055 0.19546804 0.11494109 prediction 0.415974650528916 Functional Gain - C16orf52 ENSG00000185716 CDS Human protein_coding chr16:22019637 chr16:22019639 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_125675 0 0 1 1 1 C16orf52 chr16:22019728 5'GT 22019728 Upstream 90bp
chr1 6692528 6692528 1 + C T ESCA 6692527 + 6692507 6692547 41 ACTTGAAGAGCTTCAGTTGCCCCCAAATGCCGAAGGCCACG ACTTGAAGAGCTTCAGTTGCCTCCAAATGCCGAAGGCCACG < 41bp 0.610735446442798 0.818721461256328 0.24518952 0.9566105 prediction 0.415972029627059 Functional Gain - THAP3 ENSG00000041988 CDS Human protein_coding chr1:6692527 chr1:6692528 synonymous SNV . 0 22 hm5C_associated_SNPs_125676 0 0 1 0 3 THAP3 chr1:6692430 3'AG 6692430 Downstream 99bp
chr1 6692528 6692528 1 + C T ESCA 6692527 + 6692507 6692547 41 ACTTGAAGAGCTTCAGTTGCCCCCAAATGCCGAAGGCCACG ACTTGAAGAGCTTCAGTTGCCTCCAAATGCCGAAGGCCACG < 41bp 0.610735446442798 0.818721461256328 0.24518952 0.9566105 prediction 0.415972029627059 Functional Gain - THAP3 ENSG00000041988 CDS Human protein_coding chr1:6692527 chr1:6692528 synonymous SNV . 0 22 hm5C_associated_SNPs_125676 0 0 1 0 3 THAP3 chr1:6692451 3'AG 6692451 Downstream 78bp
chr1 6692528 6692528 1 + C T ESCA 6692527 + 6692507 6692547 41 ACTTGAAGAGCTTCAGTTGCCCCCAAATGCCGAAGGCCACG ACTTGAAGAGCTTCAGTTGCCTCCAAATGCCGAAGGCCACG < 41bp 0.610735446442798 0.818721461256328 0.24518952 0.9566105 prediction 0.415972029627059 Functional Gain - THAP3 ENSG00000041988 CDS Human protein_coding chr1:6692527 chr1:6692528 synonymous SNV . 0 22 hm5C_associated_SNPs_125676 0 0 1 0 3 THAP3 chr1:6692555 5'GT 6692555 Upstream 28bp
chr2 219266430 219266430 1 + C T SKCM 219266429 + 219266409 219266449 41 GTGGAGGAGAATGGCGCCATCCCTAAGGTGCGTGGGGGCCA GTGGAGGAGAATGGCGCCATCTCTAAGGTGCGTGGGGGCCA < 41bp 0.624365270083605 0.832347876347702 0.32268655 0.90881205 prediction 0.415965212528195 Functional Gain - CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219266429 chr2:219266430 nonsynonymous SNV 0.876 1 22 hm5C_associated_SNPs_125677 0 0 1 0 1 CTDSP1 chr2:219266435 5'GT 219266435 Upstream 6bp
chr11 5011008 5011008 1 + T A UCEC 5011004 + 5010984 5011024 41 TTGACATGCAGATGCATGCTCTGCTACACCAGCCCCACTGT TTGACATGCAGATGCATGCTCTGCAACACCAGCCCCACTGT < 41bp 0.700053318904651 0.908025669948923 0.057486117 0.05634725 prediction 0.415944702088543 Functional Gain - MMP26 ENSG00000167346 CDS Human protein_coding chr11:5011004 chr11:5011008 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_125682 0 0 0 0 1 MMP26 chr11:5011098 5'GT 5011098 Upstream 91bp
chr12 52699180 52699180 1 + C T rs201943606 52699179 + 52699159 52699199 41 GCTGAGGCCGAGTCCTGGTACCGCAGCAAGGTGAGTGGCAC GCTGAGGCCGAGTCCTGGTACTGCAGCAAGGTGAGTGGCAC < 41bp 0.62663321207986 0.83460470829651 0.38817513 0.25969124 prediction 0.4159429924333 Functional Gain - KRT86 ENSG00000170442 CDS Human protein_coding chr12:52699179 chr12:52699180 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_125683 0 0 0 0 1 KRT86 chr12:52699188 5'GT 52699188 Upstream 9bp
chr2 219449404 219449404 1 + T A COAD 219449400 + 219449380 219449420 41 TTTGCACACTGTCAGCAAAACACGTCCCTTTGAGTATCTCC TTTGCACACTGTCAGCAAAACACGACCCTTTGAGTATCTCC < 41bp 0.367095100572021 0.707968447695383 0.169204 0.09981313 prediction 0.415936895390766 Functional Gain - CNOT9 ENSG00000144580 CDS Human protein_coding chr2:219449400 chr2:219449404 synonymous SNV . 0 25 hm5C_associated_SNPs_125684 0 0 1 0 2 CNOT9 chr2:219449335 3'AG 219449335 Downstream 70bp
chr2 219449404 219449404 1 + T A COAD 219449400 + 219449380 219449420 41 TTTGCACACTGTCAGCAAAACACGTCCCTTTGAGTATCTCC TTTGCACACTGTCAGCAAAACACGACCCTTTGAGTATCTCC < 41bp 0.367095100572021 0.707968447695383 0.169204 0.09981313 prediction 0.415936895390766 Functional Gain - CNOT9 ENSG00000144580 CDS Human protein_coding chr2:219449400 chr2:219449404 synonymous SNV . 0 25 hm5C_associated_SNPs_125684 0 0 1 0 2 CNOT9 chr2:219449444 5'GT 219449444 Upstream 41bp
chr4 56277929 56277929 1 + T C KIRC 56277927 + 56277907 56277947 41 AAGACATTTTTTATAGCAGCCATCATGGCAATGCGCTATAA AAGACATTTTTTATAGCAGCCACCATGGCAATGCGCTATAA < 41bp 0.405124373422403 0.707959976369079 0.26290572 0.12884405 prediction 0.415919952738158 Functional Gain - TMEM165 ENSG00000134851 CDS Human protein_coding chr4:56277927 chr4:56277929 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_125688 0 0 1 0 1 TMEM165 chr4:56278006 5'GT 56278006 Upstream 78bp
chr13 113571513 113571513 1 + C A rs549115559 113571512 + 113571492 113571532 41 CTCCAGTCCGGACCCCTCCCCCGGGCACTGCACCGCCCTGC CTCCAGTCCGGACCCCTCCCCAGGGCACTGCACCGCCCTGC < 41bp 0.611000091517353 0.818946514771529 0.93234694 0.93901736 prediction 0.415892846508351 Functional Gain - ATP11A;MCF2L-AS1 ENSG00000126217 UTR3 Human protein_coding chr13:113571512 chr13:113571513 . . 0 22 hm5C_associated_SNPs_125690 0 0 1 0 1 ATP11A;MCF2L-AS1 chr13:113571428 3'AG 113571428 Downstream 86bp
chr19 12924222 12924222 1 + C T SKCM 12924221 + 12924201 12924241 41 ATGAAGGGTCCCAAGCCCGTCCCCGTTCTTCCCACCGATAT ATGAAGGGTCCCAAGCCCGTCTCCGTTCTTCCCACCGATAT < 41bp 0.448822633639034 0.707940614732931 0.16327709 0.30750018 prediction 0.415881229465862 Functional Gain - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924221 chr19:12924222 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_125693 0 0 1 0 1 RNASEH2A chr19:12924142 3'AG 12924142 Downstream 81bp
chr6 76602328 76602328 1 + C T HNSC 76602327 + 76602307 76602347 41 CTGGAGCAGGAGCGCAGGGACCGGGAGCTGGCCCTGAGGAT CTGGAGCAGGAGCGCAGGGACTGGGAGCTGGCCCTGAGGAT < 41bp 0.464301511983683 0.707935444993396 0.857375 0.4860291 prediction 0.415870889986793 Functional Gain - MYO6 ENSG00000196586 CDS Human protein_coding chr6:76602327 chr6:76602328 nonsynonymous SNV 0.991 3 22 hm5C_associated_SNPs_125697 0 0 1 0 2 MYO6 chr6:76602247 3'AG 76602247 Downstream 82bp
chr6 76602328 76602328 1 + C T HNSC 76602327 + 76602307 76602347 41 CTGGAGCAGGAGCGCAGGGACCGGGAGCTGGCCCTGAGGAT CTGGAGCAGGAGCGCAGGGACTGGGAGCTGGCCCTGAGGAT < 41bp 0.464301511983683 0.707935444993396 0.857375 0.4860291 prediction 0.415870889986793 Functional Gain - MYO6 ENSG00000196586 CDS Human protein_coding chr6:76602327 chr6:76602328 nonsynonymous SNV 0.991 3 22 hm5C_associated_SNPs_125697 0 0 1 0 2 MYO6 chr6:76602407 5'GT 76602407 Upstream 80bp
chr11 194449 194449 1 + A G UCEC 194446 + 194426 194466 41 GCTGGGCAGTCAGGACGGTGCCTAAGTGGACCTCAGACATG GCTGGGCAGTCAGGACGGTGCCTGAGTGGACCTCAGACATG < 41bp 0.464839240593275 0.707933767541749 0.055600226 0.33099657 prediction 0.415867535083498 Functional Gain - SCGB1C1;SCGB1C2 ENSG00000188076 CDS Human protein_coding chr11:194446 chr11:194449 synonymous SNV . 0 24 hm5C_associated_SNPs_125698 0 0 0 0 1 SCGB1C1;SCGB1C2 chr11:194418 3'AG 194418 Downstream 32bp
chr20 31670789 31670789 1 + T C SKCM 31670787 + 31670767 31670807 41 AGTGATGCTCTCCACTCGGCCCTGAGAGAGGTGCCCTTGGG AGTGATGCTCTCCACTCGGCCCCGAGAGAGGTGCCCTTGGG < 41bp 0.434180821398881 0.70793349917559 0.09263095 0.11128375 prediction 0.41586699835118 Functional Gain - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31670787 chr20:31670789 nonsynonymous SNV 0.908 3 23 hm5C_associated_SNPs_125699 0 0 0 0 2 BPIFB4 chr20:31670744 3'AG 31670744 Downstream 46bp
chr20 31670789 31670789 1 + T C SKCM 31670787 + 31670767 31670807 41 AGTGATGCTCTCCACTCGGCCCTGAGAGAGGTGCCCTTGGG AGTGATGCTCTCCACTCGGCCCCGAGAGAGGTGCCCTTGGG < 41bp 0.434180821398881 0.70793349917559 0.09263095 0.11128375 prediction 0.41586699835118 Functional Gain - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31670787 chr20:31670789 nonsynonymous SNV 0.908 3 23 hm5C_associated_SNPs_125699 0 0 0 0 2 BPIFB4 chr20:31670806 5'GT 31670806 Upstream 18bp
chr19 8429391 8429391 1 + C T rs139991923 8429390 + 8429370 8429410 41 GCGCGAACACGCGGAGCGCACCCGCAGTCAGCTGAGCGCGC GCGCGAACACGCGGAGCGCACTCGCAGTCAGCTGAGCGCGC < 41bp 0.577994454956636 0.785925336461377 0.2628672 0.29309994 prediction 0.415861763009483 Functional Gain - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8429390 chr19:8429391 synonymous SNV . 0 22 hm5C_associated_SNPs_125700 0 0 1 0 1 ANGPTL4 chr19:8429435 5'GT 8429435 Upstream 45bp
chrX 71357030 71357030 1 + A G LIHC 71357027 + 71357007 71357047 41 ACCCCAAGTCCACCCTGAGGCGGAGGCGGACCATTATTGGA ACCCCAAGTCCACCCTGAGGCGGGGGCGGACCATTATTGGA < 41bp 0.480780233214946 0.707923427551984 0.90270495 0.9120296 prediction 0.415846855103967 Functional Gain - NHSL2 ENSG00000204131 CDS Human protein_coding chrX:71357027 chrX:71357030 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_125703 0 0 0 0 2 NHSL2 chrX:71356944 3'AG 71356944 Downstream 87bp
chrX 71357030 71357030 1 + A G LIHC 71357027 + 71357007 71357047 41 ACCCCAAGTCCACCCTGAGGCGGAGGCGGACCATTATTGGA ACCCCAAGTCCACCCTGAGGCGGGGGCGGACCATTATTGGA < 41bp 0.480780233214946 0.707923427551984 0.90270495 0.9120296 prediction 0.415846855103967 Functional Gain - NHSL2 ENSG00000204131 CDS Human protein_coding chrX:71357027 chrX:71357030 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_125703 0 0 0 0 2 NHSL2 chrX:71357075 5'GT 71357075 Upstream 46bp
chr13 113818900 113818900 1 + A G rs564081 113818897 + 113818877 113818917 41 CTCCCAGGACAGGAATCCTACACATGCAGCTGTGCTCAGGG CTCCCAGGACAGGAATCCTACACGTGCAGCTGTGCTCAGGG < 41bp 0.453260982980124 0.707905895843634 0.026533663 0.114037305 prediction 0.415811791687267 Functional Gain - PROZ ENSG00000126231 CDS Human protein_coding chr13:113818897 chr13:113818900 synonymous SNV . 0 24 hm5C_associated_SNPs_125711 0 0 0 0 2 PROZ chr13:113818827 3'AG 113818827 Downstream 74bp
chr13 113818900 113818900 1 + A G rs564081 113818897 + 113818877 113818917 41 CTCCCAGGACAGGAATCCTACACATGCAGCTGTGCTCAGGG CTCCCAGGACAGGAATCCTACACGTGCAGCTGTGCTCAGGG < 41bp 0.453260982980124 0.707905895843634 0.026533663 0.114037305 prediction 0.415811791687267 Functional Gain - PROZ ENSG00000126231 CDS Human protein_coding chr13:113818897 chr13:113818900 synonymous SNV . 0 24 hm5C_associated_SNPs_125711 0 0 0 0 2 PROZ chr13:113818958 5'GT 113818958 Upstream 59bp
chr10 135051562 135051562 1 + A G rs2998143 135051559 + 135051539 135051579 41 TCCCTGGGGAGCCTCCCTGGCCCAGGCCAGACATCCGGCGC TCCCTGGGGAGCCTCCCTGGCCCGGGCCAGACATCCGGCGC < 41bp 0.61040404921809 0.818305863282825 0.39394677 0.61187553 prediction 0.415803628129471 Functional Gain - VENTX ENSG00000151650 CDS Human protein_coding chr10:135051559 chr10:135051562 synonymous SNV . 0 24 hm5C_associated_SNPs_125717 0 0 0 0 1 VENTX chr10:135051659 5'GT 135051659 Upstream 98bp
chr4 177032838 177032838 1 + C A COAD 177032834 + 177032814 177032854 41 GGTTTGCATATTGTGCGACCCTGGCTATCTATATTTATCAG GGTTTGCATATTGTGCGACCCTGGATATCTATATTTATCAG < 41bp 0.306434640990546 0.7078916965317 0.053979635 0.15070796 prediction 0.4157833930634 Functional Gain - WDR17 ENSG00000150627 CDS Human protein_coding chr4:177032834 chr4:177032838 nonsynonymous SNV 0.963 4 25 hm5C_associated_SNPs_125722 0 0 1 0 1 WDR17 chr4:177032854 5'GT 177032854 Upstream 17bp
chr11 60889141 60889141 1 + C G rs200479488 60889140 + 60889120 60889160 41 CAGCAGCATCTGTGAAGGCACCGTGGAGGTGCGCCAGGGGG CAGCAGCATCTGTGAAGGCACGGTGGAGGTGCGCCAGGGGG < 41bp 0.373335260140402 0.707890677072399 0.3806742 0.6854463 prediction 0.415781354144797 Functional Gain - CD5 ENSG00000110448 CDS Human protein_coding chr11:60889140 chr11:60889141 synonymous SNV . 0 22 hm5C_associated_SNPs_125723 0 0 0 0 1 CD5 chr11:60889083 3'AG 60889083 Downstream 59bp
chr19 48789060 48789060 1 + C A LUAD 48789059 + 48789039 48789079 41 CCAAAGACGCAACCCCTCAGCCGGATATTCTTCCTAAAAGA CCAAAGACGCAACCCCTCAGCAGGATATTCTTCCTAAAAGA < 41bp 0.63085190461738 0.838740185801483 0.36953908 0.7550765 prediction 0.415776562368207 Functional Gain - ZNF114 ENSG00000178150 CDS Human protein_coding chr19:48789059 chr19:48789060 nonsynonymous SNV 0.011 0 22 hm5C_associated_SNPs_125724 0 0 0 0 1 ZNF114 chr19:48789018 3'AG 48789018 Downstream 43bp
chr1 241725547 241725547 1 + T A STAD 241725545 + 241725525 241725565 41 TATTCAACTGTCAGATCTCACCTGATGAAGAAACCTCGCTT TATTCAACTGTCAGATCTCACCAGATGAAGAAACCTCGCTT < 41bp 0.507721148118504 0.71560483990001 0.53884995 0.8969343 prediction 0.415767383563011 Functional Gain - KMO ENSG00000117009 CDS Human protein_coding chr1:241725545 chr1:241725547 nonsynonymous SNV 0.904 4 23 hm5C_associated_SNPs_125725 0 0 0 0 2 KMO chr1:241725467 3'AG 241725467 Downstream 81bp
chr1 241725547 241725547 1 + T A STAD 241725545 + 241725525 241725565 41 TATTCAACTGTCAGATCTCACCTGATGAAGAAACCTCGCTT TATTCAACTGTCAGATCTCACCAGATGAAGAAACCTCGCTT < 41bp 0.507721148118504 0.71560483990001 0.53884995 0.8969343 prediction 0.415767383563011 Functional Gain - KMO ENSG00000117009 CDS Human protein_coding chr1:241725545 chr1:241725547 nonsynonymous SNV 0.904 4 23 hm5C_associated_SNPs_125725 0 0 0 0 2 KMO chr1:241725632 5'GT 241725632 Upstream 86bp
chr15 34517785 34517785 1 + C A UCEC 34517781 + 34517761 34517801 41 CCAGGGAGACTCGCTCTACCCAGTCGGTTACTTGGACAAGC CCAGGGAGACTCGCTCTACCCAGTAGGTTACTTGGACAAGC < 41bp 0.728611039024844 0.936482462108011 0.4265999 0.6374393 prediction 0.415742846166336 Functional Gain - EMC4 ENSG00000128463 CDS Human protein_coding chr15:34517781 chr15:34517785 stopgain . 0 25 hm5C_associated_SNPs_125729 0 0 1 0 2 EMC4 chr15:34517737 3'AG 34517737 Downstream 49bp
chr15 34517785 34517785 1 + C A UCEC 34517781 + 34517761 34517801 41 CCAGGGAGACTCGCTCTACCCAGTCGGTTACTTGGACAAGC CCAGGGAGACTCGCTCTACCCAGTAGGTTACTTGGACAAGC < 41bp 0.728611039024844 0.936482462108011 0.4265999 0.6374393 prediction 0.415742846166336 Functional Gain - EMC4 ENSG00000128463 CDS Human protein_coding chr15:34517781 chr15:34517785 stopgain . 0 25 hm5C_associated_SNPs_125729 0 0 1 0 2 EMC4 chr15:34517851 5'GT 34517851 Upstream 67bp
chr19 15221519 15221519 1 + T G STAD 15221516 + 15221496 15221536 41 CCCCTCATCATCCAGAAGTGCGTTGGGCAGATCGAGCGCCG CCCCTCATCATCCAGAAGTGCGTGGGGCAGATCGAGCGCCG < 41bp 0.316124152230515 0.70787034794853 0.19371349 0.53420925 prediction 0.415740695897059 Functional Gain - SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15221516 chr19:15221519 synonymous SNV . 0 24 hm5C_associated_SNPs_125730 0 0 0 0 1 SYDE1 chr19:15221546 5'GT 15221546 Upstream 28bp
chr4 78792975 78792975 1 + C T UCEC 78792974 + 78792954 78792994 41 TGTTCTTGTTCTGTAAACATCCGAGTGCCCAACAGACATTT TGTTCTTGTTCTGTAAACATCTGAGTGCCCAACAGACATTT < 41bp 0.472790407877206 0.707859848579325 0.4392367 0.26893288 prediction 0.415719697158651 Functional Gain - MRPL1 ENSG00000169288 CDS Human protein_coding chr4:78792974 chr4:78792975 stopgain 0.002 0 22 hm5C_associated_SNPs_125733 0 0 1 0 2 MRPL1 chr4:78792898 3'AG 78792898 Downstream 78bp
chr4 78792975 78792975 1 + C T UCEC 78792974 + 78792954 78792994 41 TGTTCTTGTTCTGTAAACATCCGAGTGCCCAACAGACATTT TGTTCTTGTTCTGTAAACATCTGAGTGCCCAACAGACATTT < 41bp 0.472790407877206 0.707859848579325 0.4392367 0.26893288 prediction 0.415719697158651 Functional Gain - MRPL1 ENSG00000169288 CDS Human protein_coding chr4:78792974 chr4:78792975 stopgain 0.002 0 22 hm5C_associated_SNPs_125733 0 0 1 0 2 MRPL1 chr4:78793009 5'GT 78793009 Upstream 35bp
chr1 158815426 158815426 1 + C T SKCM 158815425 + 158815405 158815445 41 TGGATGCAAGAAGAAATGTTCCCCAAAACGACCCAGTGACA TGGATGCAAGAAGAAATGTTCTCCAAAACGACCCAGTGACA < 41bp 0.630307794821218 0.838166511826465 0.058583975 0.9306414 prediction 0.415717434010495 Functional Gain - MNDA ENSG00000163563 CDS Human protein_coding chr1:158815425 chr1:158815426 nonsynonymous SNV 0.021 0 22 hm5C_associated_SNPs_125734 0 0 0 0 1 MNDA chr1:158815377 3'AG 158815377 Downstream 50bp
chr11 193805 193805 1 + T C SKCM 193803 + 193783 193823 41 GAGGAGCTCTATGAGGGGACCTTGGGCAAGTACAATGTCAA GAGGAGCTCTATGAGGGGACCTCGGGCAAGTACAATGTCAA < 41bp 0.420371489106607 0.707858466710267 0.44184852 0.8713397 prediction 0.415716933420534 Functional Gain - SCGB1C1;SCGB1C2 ENSG00000188076 CDS Human protein_coding chr11:193803 chr11:193805 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_125735 0 0 0 0 1 SCGB1C1;SCGB1C2 chr11:193712 3'AG 193712 Downstream 94bp
chrX 16738011 16738011 1 + A G UCEC 16738008 + 16737988 16738028 41 CCAGGAGCTCCTCCACCAGGCCAAAGACTTCGGCAGTGAGT CCAGGAGCTCCTCCACCAGGCCAGAGACTTCGGCAGTGAGT < 41bp 0.461689637665166 0.707855446211941 0.684428 0.9339641 prediction 0.415710892423881 Functional Gain - SYAP1 ENSG00000169895 CDS Human protein_coding chrX:16738008 chrX:16738011 nonsynonymous SNV 0.971 0 24 hm5C_associated_SNPs_125741 0 0 1 0 1 SYAP1 chrX:16738022 5'GT 16738022 Upstream 12bp
chr16 3190750 3190750 1 + C G SKCM 3190749 + 3190729 3190769 41 AGGAGATGGTGCCGGTGGTGCCAGGCCAGACAGGCAGCGAC AGGAGATGGTGCCGGTGGTGCGAGGCCAGACAGGCAGCGAC < 41bp 0.66032083971156 0.868175595092158 0.58320373 0.78158545 prediction 0.415709510761195 Functional Gain - ZNF213 ENSG00000085644 CDS Human protein_coding chr16:3190749 chr16:3190750 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_125742 0 0 0 0 1 ZNF213 chr16:3190690 3'AG 3190690 Downstream 61bp
chr4 166795224 166795224 1 + C T STAD 166795223 + 166795203 166795243 41 TTACAAGGACCCGTGTAAAGCCGGTAAGTGGCTCTCCAGGT TTACAAGGACCCGTGTAAAGCTGGTAAGTGGCTCTCCAGGT < 41bp 0.535020252984579 0.742873457994704 0.30867565 0.2956922 prediction 0.41570641002025 Functional Gain - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166795223 chr4:166795224 synonymous SNV . 0 22 hm5C_associated_SNPs_125744 0 0 0 0 1 TLL1 chr4:166795225 5'GT 166795225 Upstream 2bp
chr19 39789057 39789057 1 + T A SARC 39789053 + 39789033 39789073 41 GTCCGCTGGCTGCCTGGAGGCATCTGTCACCTTCAACCTCT GTCCGCTGGCTGCCTGGAGGCATCAGTCACCTTCAACCTCT < 41bp 0.399655919765225 0.707852733506835 0.08490479 0.12464392 prediction 0.41570546701367 Functional Gain - IFNL1 ENSG00000182393 CDS Human protein_coding chr19:39789053 chr19:39789057 synonymous SNV . 0 25 hm5C_associated_SNPs_125745 0 0 0 0 1 IFNL1 chr19:39789031 3'AG 39789031 Downstream 27bp
chr5 161119155 161119155 1 + C G BLCA 161119154 + 161119134 161119174 41 GGCACAGTTTGCAGCCCCACCCACAGTGACAATATCAAAAG GGCACAGTTTGCAGCCCCACCGACAGTGACAATATCAAAAG < 41bp 0.680590842615161 0.888442616212354 0.06851286 0.09692657 prediction 0.415703547194386 Functional Gain - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161119154 chr5:161119155 synonymous SNV . 0 22 hm5C_associated_SNPs_125746 0 0 0 0 1 GABRA6 chr5:161119206 5'GT 161119206 Upstream 52bp
chr14 21359891 21359891 1 + T C UCEC 21359888 + 21359868 21359908 41 CCCAAATTTGTCTGCTTCTTCTGTTGGGGCTTATGGGTGTG CCCAAATTTGTCTGCTTCTTCTGCTGGGGCTTATGGGTGTG < 41bp 0.503128396950201 0.710978389128439 0.17978334 0.2729741 prediction 0.415699984356475 Functional Gain - RNASE3 ENSG00000169397 CDS Human protein_coding chr14:21359888 chr14:21359891 synonymous SNV . 0 24 hm5C_associated_SNPs_125747 0 0 0 0 1 RNASE3 chr14:21359841 3'AG 21359841 Downstream 51bp
chr4 25669569 25669569 1 + T C UCEC 25669566 + 25669546 25669586 41 ATTGGAACGTCAATCACCAACACTATTGTTGCGCTCATGCA ATTGGAACGTCAATCACCAACACCATTGTTGCGCTCATGCA < 41bp 0.568054951890934 0.77590435446792 0.11803359 0.11492339 prediction 0.415698805153974 Functional Gain - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25669566 chr4:25669569 synonymous SNV . 0 24 hm5C_associated_SNPs_125748 0 0 0 0 2 SLC34A2 chr4:25669502 3'AG 25669502 Downstream 68bp
chr4 25669569 25669569 1 + T C UCEC 25669566 + 25669546 25669586 41 ATTGGAACGTCAATCACCAACACTATTGTTGCGCTCATGCA ATTGGAACGTCAATCACCAACACCATTGTTGCGCTCATGCA < 41bp 0.568054951890934 0.77590435446792 0.11803359 0.11492339 prediction 0.415698805153974 Functional Gain - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25669566 chr4:25669569 synonymous SNV . 0 24 hm5C_associated_SNPs_125748 0 0 0 0 2 SLC34A2 chr4:25669613 5'GT 25669613 Upstream 45bp
chr7 142334611 142334611 1 + C A UCEC 142334607 + 142334587 142334627 41 CTCTCTGGCTTCTGTCTCAGCAGGCTCCGGGCTTGGTGCTG CTCTCTGGCTTCTGTCTCAGCAGGATCCGGGCTTGGTGCTG < 41bp 0.358880147704031 0.707844939271427 0.7324433 0.8447838 prediction 0.415689878542854 Functional Gain - TRY2P;MTRNR2L6 ENSG00000211747 CDS Human TR_V_gene chr7:142334607 chr7:142334611 synonymous SNV . 0 25 hm5C_associated_SNPs_125749 0 0 0 0 2 TRY2P;MTRNR2L6 chr7:142334607 3'AG 142334607 Downstream 5bp
chr7 142334611 142334611 1 + C A UCEC 142334607 + 142334587 142334627 41 CTCTCTGGCTTCTGTCTCAGCAGGCTCCGGGCTTGGTGCTG CTCTCTGGCTTCTGTCTCAGCAGGATCCGGGCTTGGTGCTG < 41bp 0.358880147704031 0.707844939271427 0.7324433 0.8447838 prediction 0.415689878542854 Functional Gain - TRY2P;MTRNR2L6 ENSG00000211747 CDS Human TR_V_gene chr7:142334607 chr7:142334611 synonymous SNV . 0 25 hm5C_associated_SNPs_125749 0 0 0 0 2 TRY2P;MTRNR2L6 chr7:142334610 3'AG 142334610 Downstream 2bp
chrX 153049583 153049583 1 + C T rs55688748 153049582 + 153049562 153049602 41 CTCACAGACCTCAGGCTTCTCCGGCTCCCTCTTCTCTCCTG CTCACAGACCTCAGGCTTCTCTGGCTCCCTCTTCTCTCCTG < 41bp 0.59678387083811 0.804627320389637 0.38546866 0.16064188 prediction 0.415686899103054 Functional Gain - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153049582 chrX:153049583 synonymous SNV . 0 22 hm5C_associated_SNPs_125750 0 0 0 0 2 SRPK3 chrX:153049576 3'AG 153049576 Downstream 8bp
chrX 153049583 153049583 1 + C T rs55688748 153049582 + 153049562 153049602 41 CTCACAGACCTCAGGCTTCTCCGGCTCCCTCTTCTCTCCTG CTCACAGACCTCAGGCTTCTCTGGCTCCCTCTTCTCTCCTG < 41bp 0.59678387083811 0.804627320389637 0.38546866 0.16064188 prediction 0.415686899103054 Functional Gain - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153049582 chrX:153049583 synonymous SNV . 0 22 hm5C_associated_SNPs_125750 0 0 0 0 2 SRPK3 chrX:153049668 5'GT 153049668 Upstream 86bp
chr11 63283171 63283171 1 + C A KIRP 63283170 + 63283150 63283190 41 GCCCCCTTCCTCTTTTACCCCCAGAGATTCTTTGAGGTAGG GCCCCCTTCCTCTTTTACCCCAAGAGATTCTTTGAGGTAGG < 41bp 0.436717480367411 0.707841796789935 0.11726877 0.2698719 prediction 0.41568359357987 Functional Gain - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63283170 chr11:63283171 nonsynonymous SNV 0.975 1 22 hm5C_associated_SNPs_125751 0 0 0 0 1 LGALS12 chr11:63283185 5'GT 63283185 Upstream 15bp
chr1 44436769 44436769 1 + T C UCEC 44436767 + 44436747 44436787 41 CTTCGTCAACGTTCTGTGGCCTTGGAGCTCTGTGTCAAGGC CTTCGTCAACGTTCTGTGGCCTCGGAGCTCTGTGTCAAGGC < 41bp 0.432857231192483 0.707833223143528 0.063639015 0.17301112 prediction 0.415666446287056 Functional Gain - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44436767 chr1:44436769 nonsynonymous SNV 0.778 2 23 hm5C_associated_SNPs_125753 0 0 1 0 1 DPH2 chr1:44436861 5'GT 44436861 Upstream 93bp
chr1 22307538 22307538 1 + C T rs7528405 22307537 + 22307517 22307557 41 ACCTCCGCCCGCAGGAGCTCCCGGACCTACCAGGTGGTGTT ACCTCCGCCCGCAGGAGCTCCTGGACCTACCAGGTGGTGTT < 41bp 0.524580226811595 0.732409677222996 0.86639595 0.7178279 prediction 0.4156589008228 Functional Gain - CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307537 chr1:22307538 nonsynonymous SNV 0.011 2 22 hm5C_associated_SNPs_125755 0 0 0 0 1 CELA3B chr1:22307531 3'AG 22307531 Downstream 8bp
chr2 152226616 152226616 1 + A G rs78264792 152226613 + 152226593 152226633 41 CCAAATGAGTACGAAGATAACCAAATCTGCTACTGGCACAT CCAAATGAGTACGAAGATAACCAGATCTGCTACTGGCACAT < 41bp 0.575506178704855 0.783334086802409 0.2539649 0.40414482 prediction 0.415655816195109 Functional Gain - TNFAIP6 ENSG00000123610 CDS Human protein_coding chr2:152226613 chr2:152226616 synonymous SNV . 0 24 hm5C_associated_SNPs_125756 0 0 0 0 1 TNFAIP6 chr2:152226534 3'AG 152226534 Downstream 83bp
chr1 155156281 155156281 1 + C T DLBC 155156280 + 155156260 155156300 41 CCCGCTTCTGCAGGTACGACCCGGACAGCGGGCACGACAGC CCCGCTTCTGCAGGTACGACCTGGACAGCGGGCACGACAGC < 41bp 0.577103752452675 0.784931623120246 0.263294 0.1876199 prediction 0.415655741335141 Functional Gain - TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155156280 chr1:155156281 nonsynonymous SNV 0.947 2 22 hm5C_associated_SNPs_125757 0 0 0 0 1 TRIM46 chr1:155156273 3'AG 155156273 Downstream 9bp
chr22 29628375 29628375 1 + C T COAD 29628374 + 29628354 29628394 41 CCCTGTTGGGCCACCCCATGCCCGGATCTCCCAGCATGGTG CCCTGTTGGGCCACCCCATGCTCGGATCTCCCAGCATGGTG < 41bp 0.60440888962895 0.812231345511203 0.06919539 0.12636125 prediction 0.415644911764506 Functional Gain - EMID1 ENSG00000186998 CDS Human protein_coding chr22:29628374 chr22:29628375 synonymous SNV . 0 22 hm5C_associated_SNPs_125758 0 0 0 0 1 EMID1 chr22:29628391 5'GT 29628391 Upstream 17bp
chr1 156027790 156027790 1 + C T COAD 156027789 + 156027769 156027809 41 GAGGGCCGTGTAGCCATCACCCGAGTGGCCAACCTTCTGCT GAGGGCCGTGTAGCCATCACCTGAGTGGCCAACCTTCTGCT < 41bp 0.604763395566308 0.81258409072045 0.9177848 0.8716779 prediction 0.415641390308283 Functional Gain - LAMTOR2 ENSG00000116586 CDS Human protein_coding chr1:156027789 chr1:156027790 stopgain 0.996 1 22 hm5C_associated_SNPs_125760 0 0 1 0 2 LAMTOR2 chr1:156027769 3'AG 156027769 Downstream 22bp
chr1 156027790 156027790 1 + C T COAD 156027789 + 156027769 156027809 41 GAGGGCCGTGTAGCCATCACCCGAGTGGCCAACCTTCTGCT GAGGGCCGTGTAGCCATCACCTGAGTGGCCAACCTTCTGCT < 41bp 0.604763395566308 0.81258409072045 0.9177848 0.8716779 prediction 0.415641390308283 Functional Gain - LAMTOR2 ENSG00000116586 CDS Human protein_coding chr1:156027789 chr1:156027790 stopgain 0.996 1 22 hm5C_associated_SNPs_125760 0 0 1 0 2 LAMTOR2 chr1:156027858 5'GT 156027858 Upstream 69bp
chr6 41754013 41754013 1 + C G rs141478229 41754012 + 41753992 41754032 41 TGCCCCAGCTGCTTCGAGAACCGCTACTCGGATGCAGGCTC TGCCCCAGCTGCTTCGAGAACGGCTACTCGGATGCAGGCTC < 41bp 0.390785079042818 0.70780679646509 0.39543626 0.39167905 prediction 0.415613592930179 Functional Gain - PRICKLE4 ENSG00000124593 CDS Human protein_coding chr6:41754012 chr6:41754013 nonsynonymous SNV 0.011 3 22 hm5C_associated_SNPs_125766 0 0 1 0 1 PRICKLE4 chr6:41754070 5'GT 41754070 Upstream 58bp
chr20 42887062 42887062 1 + C A rs372238773 42887058 + 42887038 42887078 41 CTGGCTTCCCTGCCCAGCCCCTGGCGGTGCCCACAGAGCAC CTGGCTTCCCTGCCCAGCCCCTGGAGGTGCCCACAGAGCAC < 41bp 0.727311240096287 0.935117183514254 0.28791803 0.5598895 prediction 0.415611886835934 Functional Gain - GDAP1L1 ENSG00000124194 UTR3 Human protein_coding chr20:42887058 chr20:42887062 . 0.025 0 25 hm5C_associated_SNPs_125767 0 0 0 0 1 GDAP1L1 chr20:42887017 3'AG 42887017 Downstream 46bp
chr9 135555134 135555134 1 + C A THCA 135555130 + 135555110 135555150 41 ACAGAAAACACTAGCATCCCCACCCGCGGACTCTGTAACTT ACAGAAAACACTAGCATCCCCACCAGCGGACTCTGTAACTT < 41bp 0.294928343746773 0.707791917071088 0.031922072 0.039138705 prediction 0.415583834142175 Functional Gain - GTF3C4 ENSG00000125484 CDS Human protein_coding chr9:135555130 chr9:135555134 nonsynonymous SNV 0.705 2 25 hm5C_associated_SNPs_125774 0 0 1 0 1 GTF3C4 chr9:135555190 5'GT 135555190 Upstream 57bp
chr8 87568561 87568561 1 + C T LGG 87568560 + 87568540 87568580 41 TTTGTGCCTTTCAGACAGTTCCAGAATGTGAGTACCACTCC TTTGTGCCTTTCAGACAGTTCTAGAATGTGAGTACCACTCC < 41bp 0.623942586698995 0.831734076271912 0.096625 0.0945797 prediction 0.415582979145835 Functional Gain - CPNE3 ENSG00000085719 CDS Human protein_coding chr8:87568560 chr8:87568561 stopgain 1.000 0 22 hm5C_associated_SNPs_125775 0 0 1 0 1 CPNE3 chr8:87568566 5'GT 87568566 Upstream 6bp
chr2 203879703 203879703 1 + A G rs540119987 203879700 + 203879680 203879720 41 GCGGCGGCTGCCGCGCGGCACACAATGTGAGCCCGGTGATG GCGGCGGCTGCCGCGCGGCACACGATGTGAGCCCGGTGATG < 41bp 0.552920747079496 0.760708672207632 0.09486857 0.22448158 prediction 0.415575850256273 Functional Gain - NBEAL1 ENSG00000144426 UTR5 Human protein_coding chr2:203879700 chr2:203879703 . . 0 24 hm5C_associated_SNPs_125779 0 0 1 0 1 NBEAL1 chr2:203879705 5'GT 203879705 Upstream 3bp
chrX 65474907 65474907 1 + C A UCEC 65474906 + 65474886 65474926 41 TCACTTATCAGTGGAACATCCCAGAGAGGTCTGGCCCTGGG TCACTTATCAGTGGAACATCCAAGAGAGGTCTGGCCCTGGG < 41bp 0.639190175127191 0.846974902674877 0.3992846 0.6540834 prediction 0.415569455095372 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65474906 chrX:65474907 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_125781 0 0 1 0 2 HEPH chrX:65474877 3'AG 65474877 Downstream 31bp
chrX 65474907 65474907 1 + C A UCEC 65474906 + 65474886 65474926 41 TCACTTATCAGTGGAACATCCCAGAGAGGTCTGGCCCTGGG TCACTTATCAGTGGAACATCCAAGAGAGGTCTGGCCCTGGG < 41bp 0.639190175127191 0.846974902674877 0.3992846 0.6540834 prediction 0.415569455095372 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65474906 chrX:65474907 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_125781 0 0 1 0 2 HEPH chrX:65474983 5'GT 65474983 Upstream 77bp
chr1 196684741 196684741 1 + T C UCEC 196684738 + 196684718 196684758 41 ACTAGAATCTTGTGATATCCCAGTATTTATGAATGCCAGAA ACTAGAATCTTGTGATATCCCAGCATTTATGAATGCCAGAA < 41bp 0.501447127349921 0.709228245790504 0.0899356 0.07097617 prediction 0.415562236881166 Functional Gain - CFH ENSG00000000971 CDS Human protein_coding chr1:196684738 chr1:196684741 nonsynonymous SNV 0.346 0 24 hm5C_associated_SNPs_125782 0 0 1 0 1 CFH chr1:196684723 3'AG 196684723 Downstream 19bp
chr2 44599934 44599934 1 + T C GBM 44599931 + 44599911 44599951 41 TGAATCATTTAATCTGTTTTCAGTAACAGAAGGCAAAGAAA TGAATCATTTAATCTGTTTTCAGCAACAGAAGGCAAAGAAA < 41bp 0.489779490774825 0.707780901587344 0.21932268 0.41152155 prediction 0.415561803174688 Functional Gain - CAMKMT ENSG00000143919 CDS Human protein_coding chr2:44599931 chr2:44599934 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_125783 0 0 1 0 2 CAMKMT chr2:44599855 3'AG 44599855 Downstream 80bp
chr2 44599934 44599934 1 + T C GBM 44599931 + 44599911 44599951 41 TGAATCATTTAATCTGTTTTCAGTAACAGAAGGCAAAGAAA TGAATCATTTAATCTGTTTTCAGCAACAGAAGGCAAAGAAA < 41bp 0.489779490774825 0.707780901587344 0.21932268 0.41152155 prediction 0.415561803174688 Functional Gain - CAMKMT ENSG00000143919 CDS Human protein_coding chr2:44599931 chr2:44599934 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_125783 0 0 1 0 2 CAMKMT chr2:44600027 5'GT 44600027 Upstream 94bp
chr1 76260255 76260255 1 + A G HNSC 76260252 + 76260232 76260272 41 TGTCACTTTTGGGAGAAGAACAGATTAAACCTGTTAATCCT TGTCACTTTTGGGAGAAGAACAGGTTAAACCTGTTAATCCT < 41bp 0.554456768693946 0.762235253845891 0.4813144 0.8837879 prediction 0.415556970303891 Functional Gain - RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76260252 chr1:76260255 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_125784 0 0 1 0 1 RABGGTB chr1:76260195 3'AG 76260195 Downstream 61bp
chr19 12866459 12866459 1 + C A LUAD 12866458 + 12866438 12866478 41 ATCGCACTGTACAGCTACTTCCTGGCTTGCCTCATTGGTCG ATCGCACTGTACAGCTACTTCATGGCTTGCCTCATTGGTCG < 41bp 0.438629757722351 0.707774474673214 0.09187767 0.21379378 prediction 0.415548949346428 Functional Gain - BEST2 ENSG00000039987 CDS Human protein_coding chr19:12866458 chr19:12866459 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_125786 0 0 0 0 1 BEST2 chr19:12866429 3'AG 12866429 Downstream 31bp
chr8 143927899 143927899 1 + A G SKCM 143927896 + 143927876 143927916 41 GCTGAACAGCCTCCTGAAGCCCCAGGAAAAATCTTCAAAAC GCTGAACAGCCTCCTGAAGCCCCGGGAAAAATCTTCAAAAC < 41bp 0.559608094671053 0.767381353944516 0.22655612 0.19232899 prediction 0.415546518546925 Functional Gain - GML ENSG00000104499 CDS Human protein_coding chr8:143927896 chr8:143927899 synonymous SNV . 0 24 hm5C_associated_SNPs_125787 0 0 0 0 1 GML chr8:143927811 3'AG 143927811 Downstream 89bp
chr10 43971248 43971248 1 + C G rs11816311 43971247 + 43971227 43971267 41 TGGACTCTGCTCAGAGGACCCCGTACAGAGACATGATGCTG TGGACTCTGCTCAGAGGACCCGGTACAGAGACATGATGCTG < 41bp 0.55863251309079 0.766404832046628 0.07422906 0.33383423 prediction 0.415544637911675 Functional Gain - ZNF487 ENSG00000243660 CDS Human protein_coding chr10:43971247 chr10:43971248 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_125788 0 0 0 0 2 ZNF487 chr10:43971169 3'AG 43971169 Downstream 80bp
chr10 43971248 43971248 1 + C G rs11816311 43971247 + 43971227 43971267 41 TGGACTCTGCTCAGAGGACCCCGTACAGAGACATGATGCTG TGGACTCTGCTCAGAGGACCCGGTACAGAGACATGATGCTG < 41bp 0.55863251309079 0.766404832046628 0.07422906 0.33383423 prediction 0.415544637911675 Functional Gain - ZNF487 ENSG00000243660 CDS Human protein_coding chr10:43971247 chr10:43971248 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_125788 0 0 0 0 2 ZNF487 chr10:43971295 5'GT 43971295 Upstream 48bp
chr17 58701061 58701061 1 + A G STAD 58701058 + 58701038 58701078 41 CTGTGGAGGTGACACAGGACCATAAGCCAGAACTTCCCAAG CTGTGGAGGTGACACAGGACCATGAGCCAGAACTTCCCAAG < 41bp 0.564102779089982 0.771874730260571 0.06705791 0.13099101 prediction 0.415543902341179 Functional Gain - PPM1D ENSG00000170836 CDS Human protein_coding chr17:58701058 chr17:58701061 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_125789 0 0 1 0 1 PPM1D chr17:58701110 5'GT 58701110 Upstream 50bp
chr5 40681095 40681095 1 + C A HNSC 40681091 + 40681071 40681111 41 AGGCTGCGCACCGCCAGCCACTATCATGTCCACTCCCGGGG AGGCTGCGCACCGCCAGCCACTATAATGTCCACTCCCGGGG < 41bp 0.434456749745722 0.707770061581296 0.035178304 0.5997813 prediction 0.415540123162592 Functional Gain - PTGER4 ENSG00000171522 UTR5 Human protein_coding chr5:40681091 chr5:40681095 . . 0 25 hm5C_associated_SNPs_125791 0 0 0 0 1 PTGER4 chr5:40681053 3'AG 40681053 Downstream 43bp
chr19 3938647 3938647 1 + C T rs144105210 3938646 + 3938626 3938666 41 CATGCTGGACACCGTGCAGGCCTGGCTGAGCAGCCCGCAGA CATGCTGGACACCGTGCAGGCTTGGCTGAGCAGCCCGCAGA < 41bp 0.463036092550463 0.707756759832638 0.33653575 0.22527105 prediction 0.415513519665275 Functional Gain - NMRK2 ENSG00000077009 CDS Human protein_coding chr19:3938646 chr19:3938647 synonymous SNV . 0 22 hm5C_associated_SNPs_125795 0 0 0 0 1 NMRK2 chr19:3938601 3'AG 3938601 Downstream 47bp
chr19 6744601 6744601 1 + C T rs138265315 6744600 + 6744580 6744620 41 GATGAACGCAGGGCCACCCGCCTGGGTGCCGGGTATGGGCT GATGAACGCAGGGCCACCCGCTTGGGTGCCGGGTATGGGCT < 41bp 0.450242063576092 0.70775649808495 0.16354796 0.18304408 prediction 0.4155129961699 Functional Gain - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6744600 chr19:6744601 synonymous SNV . 0 22 hm5C_associated_SNPs_125796 0 0 1 0 1 TRIP10 chr19:6744565 3'AG 6744565 Downstream 37bp
chr6 160471612 160471612 1 + C A COAD 160471608 + 160471588 160471628 41 TCTGGAATACGTGAATGGGTCGGCCTGCACCACCAGCGATG TCTGGAATACGTGAATGGGTCGGCATGCACCACCAGCGATG < 41bp 0.299611078260932 0.707756088218921 0.20592993 0.3296754 prediction 0.415512176437843 Functional Gain - IGF2R ENSG00000197081 CDS Human protein_coding chr6:160471608 chr6:160471612 synonymous SNV . 0 25 hm5C_associated_SNPs_125797 0 0 1 0 1 IGF2R chr6:160471684 5'GT 160471684 Upstream 73bp
chr2 120436811 120436811 1 + C G rs574817304 120436807 + 120436787 120436827 41 CGAGCGGCGGCGGAGGTGAGCGCACGGACGAGCGGGAGGGA CGAGCGGCGGCGGAGGTGAGCGCAGGGACGAGCGGGAGGGA < 41bp 0.65819052746848 0.86594626541996 0.8208115 0.8747027 prediction 0.415511475902962 Functional Gain - TMEM177 ENSG00000144120 UTR5 Human protein_coding chr2:120436807 chr2:120436811 . . 0 25 hm5C_associated_SNPs_125798 0 0 1 0 1 TMEM177 chr2:120436852 5'GT 120436852 Upstream 42bp
chr11 17336988 17336988 1 + A G BLCA 17336985 + 17336965 17337005 41 GGAGGAGTTTTTGAAAGCCACAGAAAAAAAAGAATTCTTGG GGAGGAGTTTTTGAAAGCCACAGGAAAAAAAGAATTCTTGG < 41bp 0.538090855183476 0.745844195075583 0.82953084 0.78344846 prediction 0.415506679784215 Functional Gain - NUCB2 ENSG00000070081 CDS Human protein_coding chr11:17336985 chr11:17336988 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_125800 0 0 1 1 1 NUCB2 chr11:17337022 5'GT 17337022 Upstream 35bp
chr20 31830997 31830997 1 + T C rs150528153 31830995 + 31830975 31831015 41 GTGCTCACAGATGGCTGGCCCATGTGCTGGAAGATGACACA GTGCTCACAGATGGCTGGCCCACGTGCTGGAAGATGACACA < 41bp 0.490406283103289 0.707743476004184 0.28680724 0.34245056 prediction 0.415486952008369 Functional Gain - BPIFA1 ENSG00000198183 UTR3 Human protein_coding chr20:31830995 chr20:31830997 . . 0 23 hm5C_associated_SNPs_125804 0 0 0 0 2 BPIFA1 chr20:31830929 3'AG 31830929 Downstream 69bp
chr20 31830997 31830997 1 + T C rs150528153 31830995 + 31830975 31831015 41 GTGCTCACAGATGGCTGGCCCATGTGCTGGAAGATGACACA GTGCTCACAGATGGCTGGCCCACGTGCTGGAAGATGACACA < 41bp 0.490406283103289 0.707743476004184 0.28680724 0.34245056 prediction 0.415486952008369 Functional Gain - BPIFA1 ENSG00000198183 UTR3 Human protein_coding chr20:31830995 chr20:31830997 . . 0 23 hm5C_associated_SNPs_125804 0 0 0 0 2 BPIFA1 chr20:31830968 3'AG 31830968 Downstream 30bp
chr19 13059912 13059912 1 + C T SKCM 13059911 + 13059891 13059931 41 ACAGGGAATTCCTGGGAGCCCCGAGCCGGAACACGGTTCTG ACAGGGAATTCCTGGGAGCCCTGAGCCGGAACACGGTTCTG < 41bp 0.587539178840274 0.795281562648175 0.24800265 0.21778682 prediction 0.415484767615801 Functional Gain - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13059911 chr19:13059912 synonymous SNV . 0 22 hm5C_associated_SNPs_125805 0 0 1 0 2 RAD23A chr19:13059895 3'AG 13059895 Downstream 18bp
chr19 13059912 13059912 1 + C T SKCM 13059911 + 13059891 13059931 41 ACAGGGAATTCCTGGGAGCCCCGAGCCGGAACACGGTTCTG ACAGGGAATTCCTGGGAGCCCTGAGCCGGAACACGGTTCTG < 41bp 0.587539178840274 0.795281562648175 0.24800265 0.21778682 prediction 0.415484767615801 Functional Gain - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13059911 chr19:13059912 synonymous SNV . 0 22 hm5C_associated_SNPs_125805 0 0 1 0 2 RAD23A chr19:13059973 5'GT 13059973 Upstream 62bp
chr6 25652673 25652673 1 + C T SKCM 25652672 + 25652652 25652692 41 GACTCTGGGGCGCTTGGACGCCGCTGGCTTCTGGCAGGTCT GACTCTGGGGCGCTTGGACGCTGCTGGCTTCTGGCAGGTCT < 41bp 0.575593393530137 0.783330286716686 0.69975424 0.46396068 prediction 0.415473786373099 Functional Gain - SCGN ENSG00000079689 CDS Human protein_coding chr6:25652672 chr6:25652673 synonymous SNV . 0 22 hm5C_associated_SNPs_125807 0 0 0 0 1 SCGN chr6:25652713 5'GT 25652713 Upstream 41bp
chr2 220073151 220073151 1 + C T SKCM 220073150 + 220073130 220073170 41 CTTCAATGTCTGTCGTAGAGCCACAACCCGATCTCCGTCCT CTTCAATGTCTGTCGTAGAGCTACAACCCGATCTCCGTCCT < 41bp 0.603380580884429 0.811115631004733 0.045059472 0.0589211 prediction 0.415470100240609 Functional Gain - ZFAND2B ENSG00000158552 CDS Human protein_coding chr2:220073150 chr2:220073151 synonymous SNV . 0 22 hm5C_associated_SNPs_125810 0 0 1 1 2 ZFAND2B chr2:220073148 3'AG 220073148 Downstream 4bp
chr2 220073151 220073151 1 + C T SKCM 220073150 + 220073130 220073170 41 CTTCAATGTCTGTCGTAGAGCCACAACCCGATCTCCGTCCT CTTCAATGTCTGTCGTAGAGCTACAACCCGATCTCCGTCCT < 41bp 0.603380580884429 0.811115631004733 0.045059472 0.0589211 prediction 0.415470100240609 Functional Gain - ZFAND2B ENSG00000158552 CDS Human protein_coding chr2:220073150 chr2:220073151 synonymous SNV . 0 22 hm5C_associated_SNPs_125810 0 0 1 1 2 ZFAND2B chr2:220073208 5'GT 220073208 Upstream 58bp
chr14 100992272 100992272 1 + C T UCEC 100992271 + 100992251 100992291 41 CCTGTTCCTCCGGGAAGGCTCCGAGTTCCTGAGCAGCACAG CCTGTTCCTCCGGGAAGGCTCTGAGTTCCTGAGCAGCACAG < 41bp 0.6049533089149 0.812688286178085 0.642812 0.462563 prediction 0.415469954526369 Functional Gain - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100992271 chr14:100992272 synonymous SNV . 0 22 hm5C_associated_SNPs_125811 0 0 0 1 1 WDR25 chr14:100992207 3'AG 100992207 Downstream 66bp
chr1 207644250 207644250 1 + C T LUSC 207644249 + 207644229 207644269 41 GGGTGTGGACACCCCCTGTACCCCAATGCAAAGGTGCCAGG GGGTGTGGACACCCCCTGTACTCCAATGCAAAGGTGCCAGG < 41bp 0.648336950412101 0.856070447733876 0.03666547 0.9281186 prediction 0.415466994643551 Functional Gain - CR2 ENSG00000117322 CDS Human protein_coding chr1:207644249 chr1:207644250 nonsynonymous SNV 0.003 3 22 hm5C_associated_SNPs_125812 0 0 0 0 1 CR2 chr1:207644261 5'GT 207644261 Upstream 12bp
chr17 73229030 73229030 1 + A G SKCM 73229027 + 73229007 73229047 41 CCTCTCTTGGAGCATCCGTGCTAAGGATGCCGCCTTTGCCA CCTCTCTTGGAGCATCCGTGCTAGGGATGCCGCCTTTGCCA < 41bp 0.622408508293117 0.830141181856385 0.47011477 0.90632427 prediction 0.415465347126536 Functional Gain - NUP85 ENSG00000125450 CDS Human protein_coding chr17:73229027 chr17:73229030 nonsynonymous SNV 0.993 0 24 hm5C_associated_SNPs_125813 0 0 1 0 2 NUP85 chr17:73228946 3'AG 73228946 Downstream 85bp
chr17 73229030 73229030 1 + A G SKCM 73229027 + 73229007 73229047 41 CCTCTCTTGGAGCATCCGTGCTAAGGATGCCGCCTTTGCCA CCTCTCTTGGAGCATCCGTGCTAGGGATGCCGCCTTTGCCA < 41bp 0.622408508293117 0.830141181856385 0.47011477 0.90632427 prediction 0.415465347126536 Functional Gain - NUP85 ENSG00000125450 CDS Human protein_coding chr17:73229027 chr17:73229030 nonsynonymous SNV 0.993 0 24 hm5C_associated_SNPs_125813 0 0 1 0 2 NUP85 chr17:73229063 5'GT 73229063 Upstream 34bp
chr19 846217 846217 1 + C T rs569153272 846216 + 846196 846236 41 CACAGCAGGACCAGCCAGTGCCCCACGGCACCCAGTGCCTG CACAGCAGGACCAGCCAGTGCTCCACGGCACCCAGTGCCTG < 41bp 0.6194317431317 0.827162542565398 0.034178257 0.89787513 prediction 0.415461598867397 Functional Gain - PRTN3 ENSG00000196415 CDS Human protein_coding chr19:846216 chr19:846217 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_125815 0 0 0 0 1 PRTN3 chr19:846147 3'AG 846147 Downstream 71bp
chr9 117386706 117386706 1 + C T rs34482578 117386705 + 117386685 117386725 41 CATCTCCTTCGACCTGGGAGCCGCAGAAGAGCAACTGCAAA CATCTCCTTCGACCTGGGAGCTGCAGAAGAGCAACTGCAAA < 41bp 0.448126692981934 0.707720055546585 0.8865122 0.72413945 prediction 0.41544011109317 Functional Gain - TMEM268 ENSG00000157693 CDS Human protein_coding chr9:117386705 chr9:117386706 synonymous SNV . 0 22 hm5C_associated_SNPs_125821 0 0 1 0 1 TMEM268 chr9:117386739 5'GT 117386739 Upstream 34bp
chr6 31379961 31379961 1 + T C UCEC 31379959 + 31379939 31379979 41 GAGCAGAGGTTCACCTGCTACATGGAACACAGCGGGAATCA GAGCAGAGGTTCACCTGCTACACGGAACACAGCGGGAATCA < 41bp 0.567696184757407 0.775415688256258 0.45095026 0.36564997 prediction 0.415439006997701 Functional Gain - MICA ENSG00000204520 CDS Human protein_coding chr6:31379959 chr6:31379961 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_125822 0 0 1 0 1 MICA chr6:31380002 5'GT 31380002 Upstream 42bp
chr9 71842927 71842927 1 + C T rs17062723 71842926 + 71842906 71842946 41 GGACACGCCGAGCAGATTGTCCAGGATGGGTGCGACACCCA GGACACGCCGAGCAGATTGTCTAGGATGGGTGCGACACCCA < 41bp 0.453998645711969 0.707713262141793 0.21715993 0.27279198 prediction 0.415426524283586 Functional Gain - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71842926 chr9:71842927 synonymous SNV . 0 22 hm5C_associated_SNPs_125824 2 0 1 0 1 TJP2 chr9:71842897 3'AG 71842897 Downstream 31bp
chr12 113591025 113591025 1 + C A rs549527224 113591024 + 113591004 113591044 41 ACTCCCCAGGACTCCGAGGCCCGGCGCAATCGCGCGCTGCG ACTCCCCAGGACTCCGAGGCCAGGCGCAATCGCGCGCTGCG < 41bp 0.438413900687061 0.707704701260186 0.85456544 0.9021934 prediction 0.415409402520372 Functional Gain - CFAP73 ENSG00000186710 CDS Human protein_coding chr12:113591024 chr12:113591025 synonymous SNV . 0 22 hm5C_associated_SNPs_125827 0 0 0 0 1 CFAP73 chr12:113591013 3'AG 113591013 Downstream 13bp
chr4 110772751 110772751 1 + C T rs544073628 110772750 + 110772730 110772770 41 CGCATAGAGAAGACTGTCATCCGCAGAATCTCTGCGGAGGC CGCATAGAGAAGACTGTCATCTGCAGAATCTCTGCGGAGGC < 41bp 0.565428848904194 0.773132223800271 0.3883928 0.40124673 prediction 0.415406749792152 Functional Gain - LRIT3 ENSG00000183423 CDS Human protein_coding chr4:110772750 chr4:110772751 nonsynonymous SNV 0.061 2 22 hm5C_associated_SNPs_125828 0 0 0 0 1 LRIT3 chr4:110772660 3'AG 110772660 Downstream 92bp
chr3 186761056 186761056 1 + T C HNSC 186761054 + 186761034 186761074 41 GGGCAGGTGTGCTGTTGTGTCGTCAGCGGGATCTCTGAAGT GGGCAGGTGTGCTGTTGTGTCGCCAGCGGGATCTCTGAAGT < 41bp 0.66653422239665 0.874235599204414 0.3200711 0.42866254 prediction 0.415402753615528 Functional Gain - ST6GAL1 ENSG00000073849 CDS Human protein_coding chr3:186761054 chr3:186761056 nonsynonymous SNV 0.461 4 23 hm5C_associated_SNPs_125830 0 0 1 0 1 ST6GAL1 chr3:186761098 5'GT 186761098 Upstream 43bp
chr7 12610578 12610578 1 + C T rs116907627 12610577 + 12610557 12610597 41 CTGCACACGGCCAAGACGAGCCGAGGCTTCACCTACCACCT CTGCACACGGCCAAGACGAGCTGAGGCTTCACCTACCACCT < 41bp 0.549050716954329 0.756746681086916 0.04703772 0.045608014 prediction 0.415391928265174 Functional Gain - SCIN ENSG00000006747 CDS Human protein_coding chr7:12610577 chr7:12610578 stopgain 0.024 0 22 hm5C_associated_SNPs_125831 0 0 0 0 1 SCIN chr7:12610611 5'GT 12610611 Upstream 34bp
chr5 85586652 85586652 1 + C T rs188076731 85586651 + 85586631 85586671 41 CCTTCTCCTTTCAGCCCCCACCGAGGCGGCCTGTCCCCAAG CCTTCTCCTTTCAGCCCCCACTGAGGCGGCCTGTCCCCAAG < 41bp 0.517340144935164 0.725026967559001 0.7087022 0.283813 prediction 0.415373645247675 Functional Gain - NBPF22P ENSG00000205449 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:85586651 chr5:85586652 . . 0 22 hm5C_associated_SNPs_125834 0 0 0 0 1 NBPF22P chr5:85586645 3'AG 85586645 Downstream 8bp
chr11 63755856 63755856 1 + C A LIHC 63755855 + 63755835 63755875 41 GCCATCATGGCTCAGCAGGACCGAATTCAGCAAGAGGTGAG GCCATCATGGCTCAGCAGGACAGAATTCAGCAAGAGGTGAG < 41bp 0.439765078684318 0.707682275784463 0.16200337 0.31467456 prediction 0.415364551568925 Functional Gain - OTUB1 ENSG00000167770 CDS Human other chr11:63755855 chr11:63755856 synonymous SNV . 0 22 hm5C_associated_SNPs_125836 0 0 1 0 2 OTUB1 chr11:63755809 3'AG 63755809 Downstream 48bp
chr11 63755856 63755856 1 + C A LIHC 63755855 + 63755835 63755875 41 GCCATCATGGCTCAGCAGGACCGAATTCAGCAAGAGGTGAG GCCATCATGGCTCAGCAGGACAGAATTCAGCAAGAGGTGAG < 41bp 0.439765078684318 0.707682275784463 0.16200337 0.31467456 prediction 0.415364551568925 Functional Gain - OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63755855 chr11:63755856 synonymous SNV . 0 22 hm5C_associated_SNPs_125836 0 0 1 0 2 OTUB1 chr11:63755870 5'GT 63755870 Upstream 15bp
chr9 90534196 90534196 1 + T G rs539204370 90534194 + 90534174 90534214 41 ATCTTGTCTCCCAGCGTCATCTTGTCTCCCAGTGTCCAACA ATCTTGTCTCCCAGCGTCATCTGGTCTCCCAGTGTCCAACA < 41bp 0.365274902444343 0.707680809779882 0.040082395 0.3746542 prediction 0.415361619559764 Functional Gain - SPATA31C1 ENSG00000230246 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:90534194 chr9:90534196 . . 0 23 hm5C_associated_SNPs_125838 0 0 0 0 2 SPATA31C1 chr9:90534170 3'AG 90534170 Downstream 27bp
chr9 90534196 90534196 1 + T G rs539204370 90534194 + 90534174 90534214 41 ATCTTGTCTCCCAGCGTCATCTTGTCTCCCAGTGTCCAACA ATCTTGTCTCCCAGCGTCATCTGGTCTCCCAGTGTCCAACA < 41bp 0.365274902444343 0.707680809779882 0.040082395 0.3746542 prediction 0.415361619559764 Functional Gain - SPATA31C1 ENSG00000230246 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:90534194 chr9:90534196 . . 0 23 hm5C_associated_SNPs_125838 0 0 0 0 2 SPATA31C1 chr9:90534263 5'GT 90534263 Upstream 68bp
chr1 26888150 26888150 1 + A G LIHC 26888147 + 26888127 26888167 41 AACTGTGGAGTATCTGCACTCACAGGGGGTGAGTCTGGATT AACTGTGGAGTATCTGCACTCACGGGGGGTGAGTCTGGATT < 41bp 0.610298093468631 0.817977471690933 0.4325964 0.8727512 prediction 0.415358756444605 Functional Gain - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26888147 chr1:26888150 nonsynonymous SNV 0.960 3 24 hm5C_associated_SNPs_125839 0 0 1 0 1 RPS6KA1 chr1:26888154 5'GT 26888154 Upstream 5bp
chr3 100074060 100074060 1 + T A SKCM 100074056 + 100074036 100074076 41 CTGAAATACGCCAGCAAATCCCCGTTTTTAGACAGAAGCGA CTGAAATACGCCAGCAAATCCCCGATTTTAGACAGAAGCGA < 41bp 0.380180239114495 0.707667058480102 0.09114364 0.16903979 prediction 0.415334116960205 Functional Gain - NIT2 ENSG00000114021 CDS Human protein_coding chr3:100074056 chr3:100074060 nonsynonymous SNV 0.960 2 25 hm5C_associated_SNPs_125841 0 0 1 0 1 NIT2 chr3:100074021 3'AG 100074021 Downstream 40bp
chr22 32233004 32233004 1 + A G LIHC 32233001 + 32232981 32233021 41 GTAGTGCCAGGCTTCTGTTGCACAGTTGGAGTGGACTGGAA GTAGTGCCAGGCTTCTGTTGCACGGTTGGAGTGGACTGGAA < 41bp 0.481362330606234 0.707658856795278 0.32033664 0.8103061 prediction 0.415317713590555 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32233001 chr22:32233004 synonymous SNV . 0 24 hm5C_associated_SNPs_125844 0 0 0 0 2 DEPDC5 chr22:32232958 3'AG 32232958 Downstream 47bp
chr22 32233004 32233004 1 + A G LIHC 32233001 + 32232981 32233021 41 GTAGTGCCAGGCTTCTGTTGCACAGTTGGAGTGGACTGGAA GTAGTGCCAGGCTTCTGTTGCACGGTTGGAGTGGACTGGAA < 41bp 0.481362330606234 0.707658856795278 0.32033664 0.8103061 prediction 0.415317713590555 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32233001 chr22:32233004 synonymous SNV . 0 24 hm5C_associated_SNPs_125844 0 0 0 0 2 DEPDC5 chr22:32232985 3'AG 32232985 Downstream 20bp
chr10 124671216 124671216 1 + C T STAD 124671215 + 124671195 124671235 41 CGGAAGCAGCTTACTGGTTGCCGCGATGGTGCTCCTAAGTG CGGAAGCAGCTTACTGGTTGCTGCGATGGTGCTCCTAAGTG < 41bp 0.561479030209209 0.769132869109195 0.13180819 0.066039026 prediction 0.415307677799972 Functional Gain - FAM24A ENSG00000203795 CDS Human protein_coding chr10:124671215 chr10:124671216 synonymous SNV . 0 22 hm5C_associated_SNPs_125845 0 0 0 0 2 FAM24A chr10:124671149 3'AG 124671149 Downstream 68bp
chr10 124671216 124671216 1 + C T STAD 124671215 + 124671195 124671235 41 CGGAAGCAGCTTACTGGTTGCCGCGATGGTGCTCCTAAGTG CGGAAGCAGCTTACTGGTTGCTGCGATGGTGCTCCTAAGTG < 41bp 0.561479030209209 0.769132869109195 0.13180819 0.066039026 prediction 0.415307677799972 Functional Gain - FAM24A ENSG00000203795 CDS Human protein_coding chr10:124671215 chr10:124671216 synonymous SNV . 0 22 hm5C_associated_SNPs_125845 0 0 0 0 2 FAM24A chr10:124671275 5'GT 124671275 Upstream 60bp
chr17 28444344 28444344 1 + A G rs562891814 28444341 + 28444321 28444361 41 AATATTGTTCTGAGAAGCCACAGAAAAAGGGTAGGCATATA AATATTGTTCTGAGAAGCCACAGGAAAAGGGTAGGCATATA < 41bp 0.534056244282555 0.741708127446388 0.11717421 0.19586158 prediction 0.415303766327666 Functional Gain - NSRP1 ENSG00000126653 CDS Human protein_coding chr17:28444341 chr17:28444344 synonymous SNV . 0 24 hm5C_associated_SNPs_125847 0 0 1 0 1 NSRP1 chr17:28444320 3'AG 28444320 Downstream 25bp
chr17 65714106 65714106 1 + C A LUAD 65714105 + 65714085 65714125 41 TTCACGTTGTCTTCGGTAGTCCTGAGCGCCGGGCCTGAAGG TTCACGTTGTCTTCGGTAGTCATGAGCGCCGGGCCTGAAGG < 41bp 0.621185334862588 0.828836459690796 0.2818104 0.8155541 prediction 0.415302249656416 Functional Gain - NOL11 ENSG00000130935 CDS Human protein_coding chr17:65714105 chr17:65714106 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_125849 0 0 1 0 1 NOL11 chr17:65714204 5'GT 65714204 Upstream 99bp
chr18 77193580 77193580 1 + C A LUSC 77193579 + 77193559 77193599 41 TCTGCTCTGTTCCCTTCCAGCCCGACCCTGCCCGCCCTGGA TCTGCTCTGTTCCCTTCCAGCACGACCCTGCCCGCCCTGGA < 41bp 0.597872275456439 0.805522815466465 0.04024017 0.108413756 prediction 0.415301080020052 Functional Gain - NFATC1 ENSG00000131196 CDS Human protein_coding chr18:77193579 chr18:77193580 nonsynonymous SNV 0.623 1 22 hm5C_associated_SNPs_125850 0 0 0 0 1 NFATC1 chr18:77193579 3'AG 77193579 Downstream 2bp
chr9 118916776 118916776 1 + C A rs529057166 118916775 + 118916755 118916795 41 CGAGGCGAGCAGCTGCGCCTCCGGGCCGACCTCGAGCTGCC CGAGGCGAGCAGCTGCGCCTCAGGGCCGACCTCGAGCTGCC < 41bp 0.596750011257729 0.804394403276501 0.9081772 0.9139363 prediction 0.415288784037542 Functional Gain - PAPPA ENSG00000182752 CDS Human protein_coding chr9:118916775 chr9:118916776 synonymous SNV . 0 22 hm5C_associated_SNPs_125853 0 0 0 0 1 PAPPA chr9:118916866 5'GT 118916866 Upstream 91bp
chr19 51828607 51828607 1 + C A LIHC 51828603 + 51828583 51828623 41 TCTGCCGCTGCCCGCAGTCCCTGCCCGCATTGTGAACATCT TCTGCCGCTGCCCGCAGTCCCTGCACGCATTGTGAACATCT < 41bp 0.279057575630725 0.707630443030809 0.005876124 0.038981408 prediction 0.415260886061619 Functional Gain - IGLON5 ENSG00000142549 CDS Human protein_coding chr19:51828603 chr19:51828607 synonymous SNV . 0 25 hm5C_associated_SNPs_125855 0 0 0 0 1 IGLON5 chr19:51828600 3'AG 51828600 Downstream 8bp
chr1 52870474 52870474 1 + A G UCEC 52870471 + 52870451 52870491 41 CAGCATCCATGGCACCAACCCTCAATATCTGGTGGAGAAGA CAGCATCCATGGCACCAACCCTCGATATCTGGTGGAGAAGA < 41bp 0.585270912222777 0.792898103039179 0.0333443 0.8741371 prediction 0.415254381632804 Functional Gain - PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52870471 chr1:52870474 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_125859 0 0 1 0 1 PRPF38A chr1:52870551 5'GT 52870551 Upstream 78bp
chr11 118403724 118403724 1 + C A COAD 118403720 + 118403700 118403740 41 CTGTTTGCCCTGGTGCGTGCCAACCCGCCGGCCAATGTCAC CTGTTTGCCCTGGTGCGTGCCAACACGCCGGCCAATGTCAC < 41bp 0.28968696844501 0.707625234692768 0.047243804 0.17489663 prediction 0.415250469385536 Functional Gain - TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118403720 chr11:118403724 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_125861 0 0 0 0 1 TMEM25 chr11:118403632 3'AG 118403632 Downstream 93bp
chr7 150171163 150171163 1 + C A COAD 150171159 + 150171139 150171179 41 AGAATCCGGGGACATCAGAACTGACAGTCCTCCTTGTGGGG AGAATCCGGGGACATCAGAACTGAAAGTCCTCCTTGTGGGG < 41bp 0.287029071512097 0.707623471157134 0.4247647 0.6481377 prediction 0.415246942314269 Functional Gain - GIMAP8 ENSG00000171115 CDS Human protein_coding chr7:150171159 chr7:150171163 nonsynonymous SNV 0.047 0 25 hm5C_associated_SNPs_125862 0 0 0 0 1 GIMAP8 chr7:150171100 3'AG 150171100 Downstream 64bp
chrX 100078981 100078981 1 + C T PAAD 100078980 + 100078960 100079000 41 TAGTGATGAGAATTGTGGATCCGGAAATTGCCCTGGTGAGT TAGTGATGAGAATTGTGGATCTGGAAATTGCCCTGGTGAGT < 41bp 0.454312787722484 0.707622024597434 0.6310127 0.3462975 prediction 0.415244049194868 Functional Gain - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100078980 chrX:100078981 nonsynonymous SNV 0.976 4 22 hm5C_associated_SNPs_125863 0 0 1 0 1 CSTF2 chrX:100078994 5'GT 100078994 Upstream 14bp
chr21 47544618 47544618 1 + A G UCEC 47544615 + 47544595 47544635 41 CCTCGGGGGCCAAGAGGAGTCCCAGGACCCGAGGTAGGTTG CCTCGGGGGCCAAGAGGAGTCCCGGGACCCGAGGTAGGTTG < 41bp 0.598388276404732 0.806008878793113 0.7506727 0.8617065 prediction 0.415241204776763 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47544615 chr21:47544618 synonymous SNV . 0 24 hm5C_associated_SNPs_125864 0 0 0 0 2 COL6A2 chr21:47544565 3'AG 47544565 Downstream 54bp
chr21 47544618 47544618 1 + A G UCEC 47544615 + 47544595 47544635 41 CCTCGGGGGCCAAGAGGAGTCCCAGGACCCGAGGTAGGTTG CCTCGGGGGCCAAGAGGAGTCCCGGGACCCGAGGTAGGTTG < 41bp 0.598388276404732 0.806008878793113 0.7506727 0.8617065 prediction 0.415241204776763 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47544615 chr21:47544618 synonymous SNV . 0 24 hm5C_associated_SNPs_125864 0 0 0 0 2 COL6A2 chr21:47544627 5'GT 47544627 Upstream 10bp
chr9 116041316 116041316 1 + T C rs146246780 116041313 + 116041293 116041333 41 AGGAAGCGAGCCCGGCAGATCAATGTTTCCACAGATGACTC AGGAAGCGAGCCCGGCAGATCAACGTTTCCACAGATGACTC < 41bp 0.520229440425546 0.727849782074837 0.14880586 0.15959504 prediction 0.415240683298582 Functional Gain - PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116041313 chr9:116041316 synonymous SNV . 0 24 hm5C_associated_SNPs_125865 0 0 1 0 2 PRPF4 chr9:116041225 3'AG 116041225 Downstream 92bp
chr9 116041316 116041316 1 + T C rs146246780 116041313 + 116041293 116041333 41 AGGAAGCGAGCCCGGCAGATCAATGTTTCCACAGATGACTC AGGAAGCGAGCCCGGCAGATCAACGTTTCCACAGATGACTC < 41bp 0.520229440425546 0.727849782074837 0.14880586 0.15959504 prediction 0.415240683298582 Functional Gain - PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116041313 chr9:116041316 synonymous SNV . 0 24 hm5C_associated_SNPs_125865 0 0 1 0 2 PRPF4 chr9:116041411 5'GT 116041411 Upstream 96bp
chr20 61460123 61460123 1 + C A LUAD 61460122 + 61460102 61460142 41 TCCCTTGTCCCCAGGGCATGCCGGGCAAGGACGGCCAGAAT TCCCTTGTCCCCAGGGCATGCAGGGCAAGGACGGCCAGAAT < 41bp 0.440975144487645 0.707617151365507 0.39832366 0.6707921 prediction 0.415234302731014 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61460122 chr20:61460123 nonsynonymous SNV 0.978 5 22 hm5C_associated_SNPs_125866 0 0 1 0 2 COL9A3 chr20:61460116 3'AG 61460116 Downstream 8bp
chr20 61460123 61460123 1 + C A LUAD 61460122 + 61460102 61460142 41 TCCCTTGTCCCCAGGGCATGCCGGGCAAGGACGGCCAGAAT TCCCTTGTCCCCAGGGCATGCAGGGCAAGGACGGCCAGAAT < 41bp 0.440975144487645 0.707617151365507 0.39832366 0.6707921 prediction 0.415234302731014 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61460122 chr20:61460123 nonsynonymous SNV 0.978 5 22 hm5C_associated_SNPs_125866 0 0 1 0 2 COL9A3 chr20:61460169 5'GT 61460169 Upstream 47bp
chr8 2040189 2040189 1 + C T STAD 2040188 + 2040168 2040208 41 GAAAAGTTGTCCCTTCTGCTCCGGGTCGGGTTCTTGCTTCC GAAAAGTTGTCCCTTCTGCTCTGGGTCGGGTTCTTGCTTCC < 41bp 0.586667464581997 0.794284389368036 0.8096945 0.24822664 prediction 0.415233849572077 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2040188 chr8:2040189 nonsynonymous SNV 0.012 4 22 hm5C_associated_SNPs_125867 0 0 0 0 1 MYOM2 chr8:2040174 3'AG 2040174 Downstream 16bp
chr17 53016342 53016342 1 + A G UCEC 53016339 + 53016319 53016359 41 CTTAAAACCCAGTCTTCATCCACAGATGAACTTGCTAGCCT CTTAAAACCCAGTCTTCATCCACGGATGAACTTGCTAGCCT < 41bp 0.513657639197836 0.721269914822071 0.07876772 0.37638927 prediction 0.41522455124847 Functional Gain - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53016339 chr17:53016342 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_125870 0 0 1 0 2 TOM1L1 chr17:53016285 3'AG 53016285 Downstream 58bp
chr17 53016342 53016342 1 + A G UCEC 53016339 + 53016319 53016359 41 CTTAAAACCCAGTCTTCATCCACAGATGAACTTGCTAGCCT CTTAAAACCCAGTCTTCATCCACGGATGAACTTGCTAGCCT < 41bp 0.513657639197836 0.721269914822071 0.07876772 0.37638927 prediction 0.41522455124847 Functional Gain - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53016339 chr17:53016342 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_125870 0 0 1 0 2 TOM1L1 chr17:53016381 5'GT 53016381 Upstream 40bp
chr3 9970149 9970149 1 + C T SKCM 9970148 + 9970128 9970168 41 GCCACTGGTCCCACCGCTTTCCTGGGAGAACGTCACTGTGG GCCACTGGTCCCACCGCTTTCTTGGGAGAACGTCACTGTGG < 41bp 0.574951901801223 0.782556572921744 0.3911297 0.07263377 prediction 0.415209342241042 Functional Gain - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9970148 chr3:9970149 synonymous SNV . 0 22 hm5C_associated_SNPs_125873 0 0 0 0 1 IL17RC chr3:9970170 5'GT 9970170 Upstream 22bp
chr7 76141016 76141016 1 + C T SKCM 76141015 + 76140995 76141035 41 CGGAGACACTGGCTGACATTCCGGCCTCCCCACAGCTGCTG CGGAGACACTGGCTGACATTCTGGCCTCCCCACAGCTGCTG < 41bp 0.595659194480547 0.803245591528876 0.2963352 0.2437957 prediction 0.415172794096658 Functional Gain - UPK3B ENSG00000243566 CDS Human protein_coding chr7:76141015 chr7:76141016 nonsynonymous SNV 0.003 3 22 hm5C_associated_SNPs_125879 0 0 0 0 1 UPK3B chr7:76140974 3'AG 76140974 Downstream 43bp
chr18 54694327 54694327 1 + C T UCEC 54694326 + 54694306 54694346 41 CCAGGTGCCCCCTGTGCAGCCCGCGTCCCCCGGCTCCCACA CCAGGTGCCCCCTGTGCAGCCTGCGTCCCCCGGCTCCCACA < 41bp 0.466282523017951 0.707582951434295 0.06872377 0.032717496 prediction 0.415165902868591 Functional Gain - WDR7 ENSG00000091157 CDS Human protein_coding chr18:54694326 chr18:54694327 synonymous SNV . 0 22 hm5C_associated_SNPs_125883 0 0 0 0 1 WDR7 chr18:54694235 3'AG 54694235 Downstream 93bp
chr10 45878028 45878028 1 + T C STAD 45878026 + 45878006 45878046 41 TGGCTGAATGACGACTGGTACCTGAAGTACATCACGCTGAA TGGCTGAATGACGACTGGTACCCGAAGTACATCACGCTGAA < 41bp 0.408976609621408 0.707582380337395 0.34610987 0.53579825 prediction 0.415164760674789 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45878026 chr10:45878028 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_125884 0 0 0 0 1 ALOX5 chr10:45877931 3'AG 45877931 Downstream 98bp
chr19 1529821 1529821 1 + C G rs143475861 1529820 + 1529800 1529840 41 TGTGCCTGGATGTAGGCCCCCCGGGTAGGAGCCGGCCCAGC TGTGCCTGGATGTAGGCCCCCGGGGTAGGAGCCGGCCCAGC < 41bp 0.688507934766429 0.896072278230105 0.67349154 0.9023249 prediction 0.415128686927352 Functional Gain - PLK5 ENSG00000185988 CDS Human protein_coding chr19:1529820 chr19:1529821 nonsynonymous SNV 0.006 1 22 hm5C_associated_SNPs_125889 0 0 0 0 2 PLK5 chr19:1529746 3'AG 1529746 Downstream 76bp
chr19 1529821 1529821 1 + C G rs143475861 1529820 + 1529800 1529840 41 TGTGCCTGGATGTAGGCCCCCCGGGTAGGAGCCGGCCCAGC TGTGCCTGGATGTAGGCCCCCGGGGTAGGAGCCGGCCCAGC < 41bp 0.688507934766429 0.896072278230105 0.67349154 0.9023249 prediction 0.415128686927352 Functional Gain - PLK5 ENSG00000185988 CDS Human protein_coding chr19:1529820 chr19:1529821 nonsynonymous SNV 0.006 1 22 hm5C_associated_SNPs_125889 0 0 0 0 2 PLK5 chr19:1529823 5'GT 1529823 Upstream 3bp
chr7 1024067 1024067 1 + C T COAD 1024066 + 1024046 1024086 41 AGCTCTCAGAACGCTACGGGCCGGTGTTCACCGTGCACCTG AGCTCTCAGAACGCTACGGGCTGGTGTTCACCGTGCACCTG < 41bp 0.515280723653009 0.722838285335216 0.9179293 0.5493633 prediction 0.415115123364414 Functional Gain - CYP2W1 ENSG00000073067 CDS Human protein_coding chr7:1024066 chr7:1024067 nonsynonymous SNV 0.015 5 22 hm5C_associated_SNPs_125891 0 0 1 0 1 CYP2W1 chr7:1024048 3'AG 1024048 Downstream 20bp
chr11 43904227 43904227 1 + C T ESCA 43904226 + 43904206 43904246 41 GAGGAAAAAAGACGGCGAGCCCGAGTTCAGGGAGCCTGGGC GAGGAAAAAAGACGGCGAGCCTGAGTTCAGGGAGCCTGGGC < 41bp 0.465903572851032 0.70755740928723 0.2349832 0.14175984 prediction 0.415114818574459 Functional Gain - ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43904226 chr11:43904227 stopgain 0.993 1 22 hm5C_associated_SNPs_125892 0 0 1 0 1 ALKBH3 chr11:43904133 3'AG 43904133 Downstream 95bp
chr19 38899447 38899447 1 + C G OV 38899443 + 38899423 38899463 41 CCGCCCAAATGAGCTGGAGCCTCCCATGCCCACCTGGAGGA CCGCCCAAATGAGCTGGAGCCTCCGATGCCCACCTGGAGGA < 41bp 0.648822770080585 0.856377485688015 0.40928447 0.49817058 prediction 0.41510943121486 Functional Gain - FAM98C ENSG00000130244 CDS Human protein_coding chr19:38899443 chr19:38899447 synonymous SNV . 0 25 hm5C_associated_SNPs_125893 0 0 1 0 1 FAM98C chr19:38899391 3'AG 38899391 Downstream 57bp
chr20 36396432 36396432 1 + T G rs529268673 36396429 + 36396409 36396449 41 AGCAGGGTCTTCTACAGTGGCTGTTGAAGAGGCTGAAGGTG AGCAGGGTCTTCTACAGTGGCTGGTGAAGAGGCTGAAGGTG < 41bp 0.309571364367664 0.707550053475591 0.26792854 0.53442216 prediction 0.415100106951182 Functional Gain - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36396429 chr20:36396432 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_125895 0 0 1 1 2 CTNNBL1 chr20:36396355 3'AG 36396355 Downstream 78bp
chr20 36396432 36396432 1 + T G rs529268673 36396429 + 36396409 36396449 41 AGCAGGGTCTTCTACAGTGGCTGTTGAAGAGGCTGAAGGTG AGCAGGGTCTTCTACAGTGGCTGGTGAAGAGGCTGAAGGTG < 41bp 0.309571364367664 0.707550053475591 0.26792854 0.53442216 prediction 0.415100106951182 Functional Gain - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36396429 chr20:36396432 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_125895 0 0 1 1 2 CTNNBL1 chr20:36396446 5'GT 36396446 Upstream 15bp
chrX 54836450 54836450 1 + A G rs185932631 54836447 + 54836427 54836467 41 CAAGAAACAGAATGCTGACCCGCAGGCTGTGACAATGCCTG CAAGAAACAGAATGCTGACCCGCGGGCTGTGACAATGCCTG < 41bp 0.596645889768964 0.804194115194873 0.07276198 0.22319344 prediction 0.415096450851818 Functional Gain - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54836447 chrX:54836450 nonsynonymous SNV 0.442 1 24 hm5C_associated_SNPs_125896 0 0 1 0 1 MAGED2 chrX:54836356 3'AG 54836356 Downstream 95bp
chr19 16620383 16620383 1 + C T UCEC 16620382 + 16620362 16620402 41 CGTCCACTGGGCAGGATGCCCCGAGGCAGGCCCAGGCGAGG CGTCCACTGGGCAGGATGCCCTGAGGCAGGCCCAGGCGAGG < 41bp 0.473394957877683 0.707539431929384 0.7718027 0.33161825 prediction 0.415078863858768 Functional Gain - C19orf44 ENSG00000105072 CDS Human protein_coding chr19:16620382 chr19:16620383 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_125900 0 0 1 0 1 C19orf44 chr19:16620310 3'AG 16620310 Downstream 74bp
chr9 128723127 128723127 1 + C T HNSC 128723126 + 128723106 128723146 41 TTCGCCCACCACACCAAATTCCGGTGCGTACTGGGGGCTCG TTCGCCCACCACACCAAATTCTGGTGCGTACTGGGGGCTCG < 41bp 0.616643129007564 0.824177920455869 0.63669896 0.6340281 prediction 0.41506958289661 Functional Gain - PBX3 ENSG00000167081 CDS Human protein_coding chr9:128723126 chr9:128723127 synonymous SNV . 0 22 hm5C_associated_SNPs_125903 0 0 1 0 1 PBX3 chr9:128723128 5'GT 128723128 Upstream 2bp
chr18 71825309 71825309 1 + C T CESC 71825308 + 71825288 71825328 41 GAGGTGACAAGGCGGGGTCGCCGGCAGCATGTCAGGTACTG GAGGTGACAAGGCGGGGTCGCTGGCAGCATGTCAGGTACTG < 41bp 0.585039596923503 0.792572909538764 0.8222374 0.38778034 prediction 0.41506662523052 Functional Gain - TIMM21 ENSG00000075336 CDS Human protein_coding chr18:71825308 chr18:71825309 nonsynonymous SNV 0.043 4 22 hm5C_associated_SNPs_125904 0 0 1 0 2 TIMM21 chr18:71825249 3'AG 71825249 Downstream 61bp
chr18 71825309 71825309 1 + C T CESC 71825308 + 71825288 71825328 41 GAGGTGACAAGGCGGGGTCGCCGGCAGCATGTCAGGTACTG GAGGTGACAAGGCGGGGTCGCTGGCAGCATGTCAGGTACTG < 41bp 0.585039596923503 0.792572909538764 0.8222374 0.38778034 prediction 0.41506662523052 Functional Gain - TIMM21 ENSG00000075336 CDS Human protein_coding chr18:71825308 chr18:71825309 nonsynonymous SNV 0.043 4 22 hm5C_associated_SNPs_125904 0 0 1 0 2 TIMM21 chr18:71825322 5'GT 71825322 Upstream 14bp
chr8 144461533 144461533 1 + A G COAD 144461530 + 144461510 144461550 41 CTTCTCCCATGCGCCGAGCCCAGACATGAGCGCTGCGTCCC CTTCTCCCATGCGCCGAGCCCAGGCATGAGCGCTGCGTCCC < 41bp 0.451495507781325 0.707529071869838 0.72048646 0.90310824 prediction 0.415058143739677 Functional Gain - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144461530 chr8:144461533 nonsynonymous SNV 0.885 4 24 hm5C_associated_SNPs_125905 0 0 1 0 1 RHPN1 chr8:144461485 3'AG 144461485 Downstream 49bp
chr15 73562506 73562506 1 + A G BLCA 73562503 + 73562483 73562523 41 ACAACTCGCTGCCCAAGCACCAGAAGATTACAGACTCCCGA ACAACTCGCTGCCCAAGCACCAGGAGATTACAGACTCCCGA < 41bp 0.475348565585413 0.707528729572931 0.5539036 0.8304825 prediction 0.415057459145862 Functional Gain - NEO1 ENSG00000067141 CDS Human protein_coding chr15:73562503 chr15:73562506 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_125906 0 0 1 0 1 NEO1 chr15:73562574 5'GT 73562574 Upstream 69bp
chr15 32449855 32449855 1 + T G UCEC 32449852 + 32449832 32449872 41 ATCGATGTACGCTGGTTTCCCTTTGATGTGCAGCACTGCAA ATCGATGTACGCTGGTTTCCCTTGGATGTGCAGCACTGCAA < 41bp 0.322378727404897 0.707528371917897 0.09529886 0.07863909 prediction 0.415056743835795 Functional Gain - CHRNA7 ENSG00000175344 CDS Human protein_coding chr15:32449852 chr15:32449855 nonsynonymous SNV 0.989 3 24 hm5C_associated_SNPs_125907 0 0 0 0 1 CHRNA7 chr15:32449809 3'AG 32449809 Downstream 47bp
chrX 48673986 48673986 1 + C A UCS 48673985 + 48673965 48674005 41 TTCTCCCTGCCCTGCAGTGCCCAGGCTTCAGTTTCCTGTGC TTCTCCCTGCCCTGCAGTGCCAAGGCTTCAGTTTCCTGTGC < 41bp 0.452366579951423 0.707524234936488 0.20295817 0.18637541 prediction 0.415048469872977 Functional Gain - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48673985 chrX:48673986 nonsynonymous SNV 0.197 0 22 hm5C_associated_SNPs_125908 0 0 1 0 2 HDAC6 chrX:48673982 3'AG 48673982 Downstream 5bp
chrX 48673986 48673986 1 + C A UCS 48673985 + 48673965 48674005 41 TTCTCCCTGCCCTGCAGTGCCCAGGCTTCAGTTTCCTGTGC TTCTCCCTGCCCTGCAGTGCCAAGGCTTCAGTTTCCTGTGC < 41bp 0.452366579951423 0.707524234936488 0.20295817 0.18637541 prediction 0.415048469872977 Functional Gain - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48673985 chrX:48673986 nonsynonymous SNV 0.197 0 22 hm5C_associated_SNPs_125908 0 0 1 0 2 HDAC6 chrX:48674049 5'GT 48674049 Upstream 64bp
chr6 36990057 36990057 1 + C T SKCM 36990056 + 36990036 36990076 41 CTCCGGGCACCGCAGTGGGTCCGGGACAAGATGGTGACCAT CTCCGGGCACCGCAGTGGGTCTGGGACAAGATGGTGACCAT < 41bp 0.597590872676611 0.805107592950185 0.5152709 0.48873788 prediction 0.415033440547149 Functional Gain - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36990056 chr6:36990057 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_125911 0 0 0 0 2 FGD2 chr6:36990015 3'AG 36990015 Downstream 43bp
chr6 36990057 36990057 1 + C T SKCM 36990056 + 36990036 36990076 41 CTCCGGGCACCGCAGTGGGTCCGGGACAAGATGGTGACCAT CTCCGGGCACCGCAGTGGGTCTGGGACAAGATGGTGACCAT < 41bp 0.597590872676611 0.805107592950185 0.5152709 0.48873788 prediction 0.415033440547149 Functional Gain - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36990056 chr6:36990057 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_125911 0 0 0 0 2 FGD2 chr6:36990146 5'GT 36990146 Upstream 90bp
chr17 18133303 18133303 1 + C T SKCM 18133302 + 18133282 18133322 41 CCCAGCGCCCTGGCCTTCGACCCGGAACTTCGCATCATGGC CCCAGCGCCCTGGCCTTCGACTCGGAACTTCGCATCATGGC < 41bp 0.441864500350777 0.707508892420966 0.3176707 0.087453574 prediction 0.415017784841933 Functional Gain - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18133302 chr17:18133303 nonsynonymous SNV 0.342 1 22 hm5C_associated_SNPs_125913 0 0 1 0 2 LLGL1 chr17:18133255 3'AG 18133255 Downstream 49bp
chr17 18133303 18133303 1 + C T SKCM 18133302 + 18133282 18133322 41 CCCAGCGCCCTGGCCTTCGACCCGGAACTTCGCATCATGGC CCCAGCGCCCTGGCCTTCGACTCGGAACTTCGCATCATGGC < 41bp 0.441864500350777 0.707508892420966 0.3176707 0.087453574 prediction 0.415017784841933 Functional Gain - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18133302 chr17:18133303 nonsynonymous SNV 0.342 1 22 hm5C_associated_SNPs_125913 0 0 1 0 2 LLGL1 chr17:18133352 5'GT 18133352 Upstream 50bp
chr4 185940981 185940981 1 + C T rs199875932 185940980 + 185940960 185941000 41 ACTGCACTCCGCTGATTTTCCCCGGGGAAGGGAAAAAGGTG ACTGCACTCCGCTGATTTTCCTCGGGGAAGGGAAAAAGGTG < 41bp 0.608381440684249 0.815886576088979 0.61329436 0.2588898 prediction 0.41501027080946 Functional Gain - HELT ENSG00000187821 CDS Human protein_coding chr4:185940980 chr4:185940981 synonymous SNV . 0 22 hm5C_associated_SNPs_125916 0 0 0 0 2 HELT chr4:185940901 3'AG 185940901 Downstream 81bp
chr4 185940981 185940981 1 + C T rs199875932 185940980 + 185940960 185941000 41 ACTGCACTCCGCTGATTTTCCCCGGGGAAGGGAAAAAGGTG ACTGCACTCCGCTGATTTTCCTCGGGGAAGGGAAAAAGGTG < 41bp 0.608381440684249 0.815886576088979 0.61329436 0.2588898 prediction 0.41501027080946 Functional Gain - HELT ENSG00000187821 CDS Human protein_coding chr4:185940980 chr4:185940981 synonymous SNV . 0 22 hm5C_associated_SNPs_125916 0 0 0 0 2 HELT chr4:185940997 5'GT 185940997 Upstream 17bp
chr7 73961570 73961570 1 + C T COAD 73961569 + 73961549 73961589 41 TGCTTCGGGATCGCCAAGCTCCGGAAGATTCTGGAGGCCAG TGCTTCGGGATCGCCAAGCTCTGGAAGATTCTGGAGGCCAG < 41bp 0.63941662366794 0.846912660839792 0.6758444 0.46087635 prediction 0.414992074343704 Functional Gain - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73961569 chr7:73961570 nonsynonymous SNV 0.049 3 22 hm5C_associated_SNPs_125920 0 0 0 0 1 GTF2IRD1 chr7:73961616 5'GT 73961616 Upstream 47bp
chr2 75113668 75113668 1 + T A LUSC 75113664 + 75113644 75113684 41 AGGAGATGCGCAACGTGGAACTGGTGGAAGGAGAAGAGGGG AGGAGATGCGCAACGTGGAACTGGAGGAAGGAGAAGAGGGG < 41bp 0.368252506461593 0.707495732549614 0.41075075 0.5517515 prediction 0.414991465099227 Functional Gain - HK2 ENSG00000159399 CDS Human protein_coding chr2:75113664 chr2:75113668 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_125921 0 0 1 0 1 HK2 chr2:75113617 3'AG 75113617 Downstream 52bp
chr1 92528661 92528661 1 + T C UCEC 92528658 + 92528638 92528678 41 TGACCACTCCAACACTACTACTGTGGGGAGAGAATGACGCA TGACCACTCCAACACTACTACTGCGGGGAGAGAATGACGCA < 41bp 0.550313696991541 0.757808894198628 0.034633428 0.026258409 prediction 0.414990394414174 Functional Gain - EPHX4 ENSG00000172031 CDS Human protein_coding chr1:92528658 chr1:92528661 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_125922 0 0 0 0 1 EPHX4 chr1:92528612 3'AG 92528612 Downstream 50bp
chrX 144337221 144337221 1 + C A LUSC 144337220 + 144337200 144337240 41 ACACCAAACAGGGACTTAGCCCCCGAACCGAGTTTGAAAAA ACACCAAACAGGGACTTAGCCACCGAACCGAGTTTGAAAAA < 41bp 0.624277562115723 0.831766646976047 0.05190909 0.11329195 prediction 0.414978169720649 Functional Gain - SPANXN1 ENSG00000203923 CDS Human protein_coding chrX:144337220 chrX:144337221 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_125924 0 0 0 0 1 SPANXN1 chrX:144337191 3'AG 144337191 Downstream 31bp
chr7 150746440 150746440 1 + C T SKCM 150746439 + 150746419 150746459 41 CTATGCCCGTGCTGGGCACTCCCTGGATGACATGCTGCTGG CTATGCCCGTGCTGGGCACTCTCTGGATGACATGCTGCTGG < 41bp 0.463571598351275 0.70748364701723 0.23707658 0.19552463 prediction 0.414967294034459 Functional Gain - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150746439 chr7:150746440 synonymous SNV . 0 22 hm5C_associated_SNPs_125925 0 0 1 7 1 ASIC3 chr7:150746506 5'GT 150746506 Upstream 67bp
chr3 183756275 183756275 1 + T C ESCA 183756273 + 183756253 183756293 41 TTCATCACCCACCTGCTGCACGTGGCCACCACCCAGCCCCT TTCATCACCCACCTGCTGCACGCGGCCACCACCCAGCCCCT < 41bp 0.635509229564121 0.842991641785568 0.2244876 0.2714222 prediction 0.414964824442893 Functional Gain - HTR3D ENSG00000186090 CDS Human protein_coding chr3:183756273 chr3:183756275 nonsynonymous SNV 0.988 1 23 hm5C_associated_SNPs_125926 0 0 0 0 1 HTR3D chr3:183756197 3'AG 183756197 Downstream 79bp
chr12 4460522 4460522 1 + C T STAD 4460521 + 4460501 4460541 41 GTGCCCTGTGTTTACACCGCCCGGAGGAGAGACGCTGGACC GTGCCCTGTGTTTACACCGCCTGGAGGAGAGACGCTGGACC < 41bp 0.618454082324011 0.825933352059323 0.6062689 0.59939104 prediction 0.414958539470625 Functional Gain - TIGAR ENSG00000078237 CDS Human protein_coding chr12:4460521 chr12:4460522 synonymous SNV . 0 22 hm5C_associated_SNPs_125927 0 0 1 0 2 TIGAR chr12:4460433 3'AG 4460433 Downstream 90bp
chr12 4460522 4460522 1 + C T STAD 4460521 + 4460501 4460541 41 GTGCCCTGTGTTTACACCGCCCGGAGGAGAGACGCTGGACC GTGCCCTGTGTTTACACCGCCTGGAGGAGAGACGCTGGACC < 41bp 0.618454082324011 0.825933352059323 0.6062689 0.59939104 prediction 0.414958539470625 Functional Gain - TIGAR ENSG00000078237 CDS Human protein_coding chr12:4460521 chr12:4460522 synonymous SNV . 0 22 hm5C_associated_SNPs_125927 0 0 1 0 2 TIGAR chr12:4460543 5'GT 4460543 Upstream 22bp
chr7 56020921 56020921 1 + A G COAD 56020918 + 56020898 56020938 41 GTTCGCTCATCCGTCCATGCCAGATGGATTGTGGGGAAGGT GTTCGCTCATCCGTCCATGCCAGGTGGATTGTGGGGAAGGT < 41bp 0.570033357507058 0.777511517058198 0.36950096 0.71115535 prediction 0.41495631910228 Functional Gain - MRPS17 ENSG00000239789;ENSG00000249773 CDS Human protein_coding chr7:56020918 chr7:56020921 synonymous SNV . 0 24 hm5C_associated_SNPs_125929 0 0 1 0 2 MRPS17 chr7:56020872 3'AG 56020872 Downstream 50bp
chr7 56020921 56020921 1 + A G COAD 56020918 + 56020898 56020938 41 GTTCGCTCATCCGTCCATGCCAGATGGATTGTGGGGAAGGT GTTCGCTCATCCGTCCATGCCAGGTGGATTGTGGGGAAGGT < 41bp 0.570033357507058 0.777511517058198 0.36950096 0.71115535 prediction 0.41495631910228 Functional Gain - MRPS17 ENSG00000239789;ENSG00000249773 CDS Human other chr7:56020918 chr7:56020921 synonymous SNV . 0 24 hm5C_associated_SNPs_125929 0 0 1 0 2 MRPS17 chr7:56021011 5'GT 56021011 Upstream 91bp
chr20 43936867 43936867 1 - G T BRCA 43936868 - 43936848 43936888 41 GTCCAAGTGCCCGGGAGGCTCCGCCTGTCGGCTTCGCTCTG GTCCAAGTGCCCGGGAGGCTCAGCCTGTCGGCTTCGCTCTG < 41bp 0.485541232408199 0.707475161461525 0.5844943 0.8232672 prediction 0.41495032292305 Functional Gain - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43936868 chr20:43936867 nonsynonymous SNV 0.698 0 22 hm5C_associated_SNPs_125932 0 0 0 0 2 RBPJL chr20:43936815 5'GT 43936815 Upstream 53bp
chr20 43936867 43936867 1 - G T BRCA 43936868 - 43936848 43936888 41 GTCCAAGTGCCCGGGAGGCTCCGCCTGTCGGCTTCGCTCTG GTCCAAGTGCCCGGGAGGCTCAGCCTGTCGGCTTCGCTCTG < 41bp 0.485541232408199 0.707475161461525 0.5844943 0.8232672 prediction 0.41495032292305 Functional Gain - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43936868 chr20:43936867 nonsynonymous SNV 0.698 0 22 hm5C_associated_SNPs_125932 0 0 0 0 2 MATN4 chr20:43936937 3'AG 43936937 Downstream 71bp
chr11 73364058 73364058 1 + C T GBM 73364057 + 73364037 73364077 41 TGCTGGAGGCAAACTCCACCCCGGTGAGTCTCCCGTTCTCT TGCTGGAGGCAAACTCCACCCTGGTGAGTCTCCCGTTCTCT < 41bp 0.458338176740914 0.707475079041178 0.65265447 0.7104534 prediction 0.414950158082356 Functional Gain - PLEKHB1 ENSG00000021300 CDS Human protein_coding chr11:73364057 chr11:73364058 nonsynonymous SNV 0.243 2 22 hm5C_associated_SNPs_125933 0 0 1 0 2 PLEKHB1 chr11:73364020 3'AG 73364020 Downstream 39bp
chr11 73364058 73364058 1 + C T GBM 73364057 + 73364037 73364077 41 TGCTGGAGGCAAACTCCACCCCGGTGAGTCTCCCGTTCTCT TGCTGGAGGCAAACTCCACCCTGGTGAGTCTCCCGTTCTCT < 41bp 0.458338176740914 0.707475079041178 0.65265447 0.7104534 prediction 0.414950158082356 Functional Gain - PLEKHB1 ENSG00000021300 CDS Human protein_coding chr11:73364057 chr11:73364058 nonsynonymous SNV 0.243 2 22 hm5C_associated_SNPs_125933 0 0 1 0 2 PLEKHB1 chr11:73364059 5'GT 73364059 Upstream 2bp
chr2 136409330 136409330 1 + A G COAD 136409327 + 136409307 136409347 41 ACCTAGGGTCTCAGTTTAGCCACATGAGTCTTGCTCGCCAG ACCTAGGGTCTCAGTTTAGCCACGTGAGTCTTGCTCGCCAG < 41bp 0.593973432714417 0.801442504564582 0.8885748 0.85570335 prediction 0.41493814370033 Functional Gain - R3HDM1 ENSG00000048991 CDS Human protein_coding chr2:136409327 chr2:136409330 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_125937 0 0 1 0 2 R3HDM1 chr2:136409300 3'AG 136409300 Downstream 31bp
chr2 136409330 136409330 1 + A G COAD 136409327 + 136409307 136409347 41 ACCTAGGGTCTCAGTTTAGCCACATGAGTCTTGCTCGCCAG ACCTAGGGTCTCAGTTTAGCCACGTGAGTCTTGCTCGCCAG < 41bp 0.593973432714417 0.801442504564582 0.8885748 0.85570335 prediction 0.41493814370033 Functional Gain - R3HDM1 ENSG00000048991 CDS Human protein_coding chr2:136409327 chr2:136409330 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_125937 0 0 1 0 2 R3HDM1 chr2:136409303 3'AG 136409303 Downstream 28bp
chr3 128979469 128979469 1 + T C BLCA 128979467 + 128979447 128979487 41 GTCCTCCCAAAACAGGTTGCCATGAAGCATCCGTCAGCTGT GTCCTCCCAAAACAGGTTGCCACGAAGCATCCGTCAGCTGT < 41bp 0.413227185774779 0.707462908032657 0.30768907 0.082877636 prediction 0.414925816065315 Functional Gain - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128979467 chr3:128979469 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_125941 0 0 1 0 1 COPG1 chr3:128979462 3'AG 128979462 Downstream 8bp
chr2 88828633 88828633 1 + C T SARC 88828632 + 88828612 88828652 41 AGGCCCATCCCTAACCCCAACCCCAAGCTAACAGATGGGTA AGGCCCATCCCTAACCCCAACTCCAAGCTAACAGATGGGTA < 41bp 0.439961526558463 0.707457438009999 0.09038955 0.9397188 prediction 0.414914876019998 Functional Gain - TEX37 ENSG00000172073 CDS Human protein_coding chr2:88828632 chr2:88828633 nonsynonymous SNV 0.762 4 22 hm5C_associated_SNPs_125943 0 0 0 0 1 TEX37 chr2:88828570 3'AG 88828570 Downstream 64bp
chr16 29811359 29811359 1 + C T SKCM 29811358 + 29811338 29811378 41 GCAGCTCCAGCCTCTGCCTCCCAGAAACTCAGGTGAGCAGT GCAGCTCCAGCCTCTGCCTCCTAGAAACTCAGGTGAGCAGT < 41bp 0.440428674296576 0.707455808172502 0.28324765 0.13287753 prediction 0.414911616345003 Functional Gain - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811358 chr16:29811359 stopgain 0.994 0 22 hm5C_associated_SNPs_125944 0 0 1 0 1 KIF22 chr16:29811369 5'GT 29811369 Upstream 11bp
chr6 393360 393360 1 + C G DLBC 393356 + 393336 393376 41 TACAACCGCGAGGAGGACGCCGCGCTCTTCAAGGTCTCCGG TACAACCGCGAGGAGGACGCCGCGGTCTTCAAGGTCTCCGG < 41bp 0.653994633017066 0.861448800712485 0.4492688 0.871307 prediction 0.414908335390838 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:393356 chr6:393360 nonsynonymous SNV 0.956 3 25 hm5C_associated_SNPs_125946 0 0 0 0 1 IRF4 chr6:393368 5'GT 393368 Upstream 9bp
chr17 10600947 10600947 1 + C G rs560867516 10600946 + 10600926 10600966 41 TGGTGGCGCTGTTACATAGCCCGTAGTCAGAGGCCTTTCAG TGGTGGCGCTGTTACATAGCCGGTAGTCAGAGGCCTTTCAG < 41bp 0.675439773823916 0.882887287829239 0.026224941 0.85561824 prediction 0.414895028010646 Functional Gain - ADPRM ENSG00000170222 UTR5 Human protein_coding chr17:10600946 chr17:10600947 . . 0 22 hm5C_associated_SNPs_125950 0 0 0 0 1 ADPRM chr17:10600984 5'GT 10600984 Upstream 38bp
chr10 45485152 45485152 1 + T C UCEC 45485150 + 45485130 45485170 41 CCCAGTGAGTTCGCACTCTACATCGTTCACGAGTCTGGGGG CCCAGTGAGTTCGCACTCTACACCGTTCACGAGTCTGGGGG < 41bp 0.41829597026345 0.707444447456611 0.08180785 0.076241374 prediction 0.414888894913221 Functional Gain - RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45485150 chr10:45485152 nonsynonymous SNV 0.982 0 23 hm5C_associated_SNPs_125952 0 0 1 0 2 RASSF4 chr10:45485118 3'AG 45485118 Downstream 35bp
chr10 45485152 45485152 1 + T C UCEC 45485150 + 45485130 45485170 41 CCCAGTGAGTTCGCACTCTACATCGTTCACGAGTCTGGGGG CCCAGTGAGTTCGCACTCTACACCGTTCACGAGTCTGGGGG < 41bp 0.41829597026345 0.707444447456611 0.08180785 0.076241374 prediction 0.414888894913221 Functional Gain - RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45485150 chr10:45485152 nonsynonymous SNV 0.982 0 23 hm5C_associated_SNPs_125952 0 0 1 0 2 RASSF4 chr10:45485169 5'GT 45485169 Upstream 18bp
chr19 41928188 41928188 1 + C G KIRP 41928184 + 41928164 41928204 41 GCCGGCTTCAACTTCGCTGCCACACTTGAGTGCCCCATCAT GCCGGCTTCAACTTCGCTGCCACAGTTGAGTGCCCCATCAT < 41bp 0.415316791381782 0.707443738613717 0.1646029 0.17665705 prediction 0.414887477227434 Functional Gain - BCKDHA ENSG00000248098;ENSG00000255730 CDS Human other chr19:41928184 chr19:41928188 nonsynonymous SNV 0.728 3 25 hm5C_associated_SNPs_125953 0 0 0 0 1 BCKDHA chr19:41928275 5'GT 41928275 Upstream 88bp
chr19 16861150 16861150 1 + T A ACC 16861146 + 16861126 16861166 41 CCGCAGAGGAAGCCACGCACCAACTCTGCACCCGCCTGGAG CCGCAGAGGAAGCCACGCACCAACACTGCACCCGCCTGGAG < 41bp 0.363798158199925 0.707436619300591 0.075122684 0.11340845 prediction 0.414873238601183 Functional Gain - NWD1 ENSG00000188039 CDS Human protein_coding chr19:16861146 chr19:16861150 nonsynonymous SNV 0.100 3 25 hm5C_associated_SNPs_125955 0 0 0 0 1 NWD1 chr19:16861222 5'GT 16861222 Upstream 73bp
chr2 159663618 159663618 1 + A G STAD 159663615 + 159663595 159663635 41 ACACTGGATGCCCTGAATGACGCACTGGAGAAGGTGAGCCG ACACTGGATGCCCTGAATGACGCGCTGGAGAAGGTGAGCCG < 41bp 0.465297459799514 0.707433215617184 0.026456475 0.03827083 prediction 0.414866431234368 Functional Gain - DAPL1 ENSG00000163331 CDS Human protein_coding chr2:159663615 chr2:159663618 synonymous SNV . 0 24 hm5C_associated_SNPs_125957 0 0 0 0 2 DAPL1 chr2:159663567 3'AG 159663567 Downstream 52bp
chr2 159663618 159663618 1 + A G STAD 159663615 + 159663595 159663635 41 ACACTGGATGCCCTGAATGACGCACTGGAGAAGGTGAGCCG ACACTGGATGCCCTGAATGACGCGCTGGAGAAGGTGAGCCG < 41bp 0.465297459799514 0.707433215617184 0.026456475 0.03827083 prediction 0.414866431234368 Functional Gain - DAPL1 ENSG00000163331 CDS Human protein_coding chr2:159663615 chr2:159663618 synonymous SNV . 0 24 hm5C_associated_SNPs_125957 0 0 0 0 2 DAPL1 chr2:159663627 5'GT 159663627 Upstream 10bp
chr21 45845566 45845566 1 + C T KIRC 45845565 + 45845545 45845585 41 GTCCCCAGCCTCCCAGAAGGCCGCGGAGGAGCCGGATGCTG GTCCCCAGCCTCCCAGAAGGCTGCGGAGGAGCCGGATGCTG < 41bp 0.4717335910956 0.707430210823346 0.30264366 0.23175585 prediction 0.414860421646692 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45845565 chr21:45845566 synonymous SNV . 0 22 hm5C_associated_SNPs_125958 0 0 0 0 1 TRPM2 chr21:45845553 3'AG 45845553 Downstream 14bp
chr17 4500594 4500594 1 + T G COAD 4500592 + 4500572 4500612 41 CCCACGCAGAGGCAGAAGAACTTCGAGCTGGCTTTCACCAT CCCACGCAGAGGCAGAAGAACTGCGAGCTGGCTTTCACCAT < 41bp 0.353815699173403 0.707427430650989 0.27306587 0.718284 prediction 0.414854861301978 Functional Gain - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4500592 chr17:4500594 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_125960 0 0 0 0 1 SMTNL2 chr17:4500618 5'GT 4500618 Upstream 25bp
chr17 80010320 80010320 1 + T C BRCA 80010317 + 80010297 80010337 41 CTGAGCGCCAGCCTGTCGGCCTGTACGCTGCTCTACGAGGT CTGAGCGCCAGCCTGTCGGCCTGCACGCTGCTCTACGAGGT < 41bp 0.517625081649254 0.725052445525453 0.01189211 0.014631897 prediction 0.414854727752398 Functional Gain - GPS1 ENSG00000169727;ENSG00000169727 exonic;splicing Human protein_coding chr17:80010317 chr17:80010320 synonymous SNV . 0 24 hm5C_associated_SNPs_125961 0 0 1 0 2 GPS1 chr17:80010251 3'AG 80010251 Downstream 70bp
chr17 80010320 80010320 1 + T C BRCA 80010317 + 80010297 80010337 41 CTGAGCGCCAGCCTGTCGGCCTGTACGCTGCTCTACGAGGT CTGAGCGCCAGCCTGTCGGCCTGCACGCTGCTCTACGAGGT < 41bp 0.517625081649254 0.725052445525453 0.01189211 0.014631897 prediction 0.414854727752398 Functional Gain - GPS1 ENSG00000169727;ENSG00000169727 exonic;splicing Human protein_coding chr17:80010317 chr17:80010320 synonymous SNV . 0 24 hm5C_associated_SNPs_125961 0 0 1 0 2 GPS1 chr17:80010335 5'GT 80010335 Upstream 16bp
chr19 11024599 11024599 1 + C T SKCM 11024598 + 11024578 11024618 41 CGGACCGCATCGTGGTCATCCCGGGCAAGGTGGAGGAGGTG CGGACCGCATCGTGGTCATCCTGGGCAAGGTGGAGGAGGTG < 41bp 0.466344579555184 0.707421109543522 0.6250858 0.6160493 prediction 0.414842219087044 Functional Gain - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11024598 chr19:11024599 nonsynonymous SNV 0.672 1 22 hm5C_associated_SNPs_125964 0 0 1 0 1 CARM1 chr19:11024553 3'AG 11024553 Downstream 47bp
chr1 158152691 158152691 1 + C T BLCA 158152690 + 158152670 158152710 41 AAGCCCAAGGCCTGGCTGTCCCGTGGCCCCAGTCCTGGCCC AAGCCCAAGGCCTGGCTGTCCTGTGGCCCCAGTCCTGGCCC < 41bp 0.470729867417083 0.707412880376546 0.79866946 0.46769163 prediction 0.414825760753091 Functional Gain - CD1D ENSG00000158473 CDS Human protein_coding chr1:158152690 chr1:158152691 nonsynonymous SNV 0.913 0 22 hm5C_associated_SNPs_125967 0 0 0 0 1 CD1D chr1:158152668 3'AG 158152668 Downstream 24bp
chr5 42689034 42689034 1 + A G UCEC 42689031 + 42689011 42689051 41 ATTCACCAAGTGCCGTTCACCTGAGCGAGAGACTTTTTCAT ATTCACCAAGTGCCGTTCACCTGGGCGAGAGACTTTTTCAT < 41bp 0.486248750581986 0.707411763921813 0.26773268 0.50007635 prediction 0.414823527843625 Functional Gain - GHR ENSG00000112964 CDS Human protein_coding chr5:42689031 chr5:42689034 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_125968 0 0 0 0 2 GHR chr5:42688992 3'AG 42688992 Downstream 43bp
chr5 42689034 42689034 1 + A G UCEC 42689031 + 42689011 42689051 41 ATTCACCAAGTGCCGTTCACCTGAGCGAGAGACTTTTTCAT ATTCACCAAGTGCCGTTCACCTGGGCGAGAGACTTTTTCAT < 41bp 0.486248750581986 0.707411763921813 0.26773268 0.50007635 prediction 0.414823527843625 Functional Gain - GHR ENSG00000112964 CDS Human protein_coding chr5:42689031 chr5:42689034 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_125968 0 0 0 0 2 GHR chr5:42689121 5'GT 42689121 Upstream 88bp
chr2 128377979 128377979 1 + C T STAD 128377978 + 128377958 128377998 41 TTCAAAACAAGCAGCCTGGCCCGGGGCTGGATCCTGCTCAG TTCAAAACAAGCAGCCTGGCCTGGGGCTGGATCCTGCTCAG < 41bp 0.578370603204527 0.785781668202316 0.95270765 0.9369775 prediction 0.414822129995579 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128377978 chr2:128377979 nonsynonymous SNV 0.962 5 22 hm5C_associated_SNPs_125969 0 0 0 0 2 MYO7B chr2:128377915 3'AG 128377915 Downstream 65bp
chr2 128377979 128377979 1 + C T STAD 128377978 + 128377958 128377998 41 TTCAAAACAAGCAGCCTGGCCCGGGGCTGGATCCTGCTCAG TTCAAAACAAGCAGCCTGGCCTGGGGCTGGATCCTGCTCAG < 41bp 0.578370603204527 0.785781668202316 0.95270765 0.9369775 prediction 0.414822129995579 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128377978 chr2:128377979 nonsynonymous SNV 0.962 5 22 hm5C_associated_SNPs_125969 0 0 0 0 2 MYO7B chr2:128378041 5'GT 128378041 Upstream 63bp
chr16 55608595 55608595 1 + T C LUSC 55608593 + 55608573 55608613 41 TATGTGATTGGCCTGGCTGTCTTGTGCAACCCTTCCAACAC TATGTGATTGGCCTGGCTGTCTCGTGCAACCCTTCCAACAC < 41bp 0.667419254470091 0.874814983024374 0.05934879 0.2089355 prediction 0.414791457108565 Functional Gain - LPCAT2 ENSG00000087253 CDS Human protein_coding chr16:55608593 chr16:55608595 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_125971 0 0 0 0 2 LPCAT2 chr16:55608543 3'AG 55608543 Downstream 53bp
chr16 55608595 55608595 1 + T C LUSC 55608593 + 55608573 55608613 41 TATGTGATTGGCCTGGCTGTCTTGTGCAACCCTTCCAACAC TATGTGATTGGCCTGGCTGTCTCGTGCAACCCTTCCAACAC < 41bp 0.667419254470091 0.874814983024374 0.05934879 0.2089355 prediction 0.414791457108565 Functional Gain - LPCAT2 ENSG00000087253 CDS Human protein_coding chr16:55608593 chr16:55608595 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_125971 0 0 0 0 2 LPCAT2 chr16:55608641 5'GT 55608641 Upstream 47bp
chr4 49005803 49005803 1 + T C LUSC 49005800 + 49005780 49005820 41 CCTGCACACATGGGCAGCTGCTGTGTCTGGCTGTGTCTTCG CCTGCACACATGGGCAGCTGCTGCGTCTGGCTGTGTCTTCG < 41bp 0.478978635317198 0.707393538255197 0.1787071 0.30382174 prediction 0.414787076510394 Functional Gain - CWH43 ENSG00000109182 CDS Human protein_coding chr4:49005800 chr4:49005803 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_125974 0 0 0 0 1 CWH43 chr4:49005752 3'AG 49005752 Downstream 52bp
chr2 148684699 148684699 1 + A G LIHC 148684696 + 148684676 148684716 41 GAAGAATGTTGGGATCACGACGCAGAAGCCAGGTTATCAGC GAAGAATGTTGGGATCACGACGCGGAAGCCAGGTTATCAGC < 41bp 0.483728096226089 0.707389361250562 0.15900183 0.82060087 prediction 0.414778722501125 Functional Gain - ACVR2A ENSG00000121989 CDS Human protein_coding chr2:148684696 chr2:148684699 synonymous SNV . 0 24 hm5C_associated_SNPs_125976 0 0 1 0 1 ACVR2A chr2:148684649 3'AG 148684649 Downstream 51bp
chr7 2701376 2701376 1 + C A rs112743770 2701375 + 2701355 2701395 41 CTCCAGCGGCAGCCACTAGACCGCGCCCGGCAGCCACCCAC CTCCAGCGGCAGCCACTAGACAGCGCCCGGCAGCCACCCAC < 41bp 0.628705187824545 0.83609410429084 0.19999912 0.3333897 prediction 0.41477783293259 Functional Gain - TTYH3 ENSG00000136295 UTR3 Human protein_coding chr7:2701375 chr7:2701376 . . 0 22 hm5C_associated_SNPs_125977 0 0 1 0 1 TTYH3 chr7:2701302 3'AG 2701302 Downstream 75bp
chr10 118386828 118386828 1 + C A rs9787662 118386827 + 118386807 118386847 41 AGAGAGCAGGCTGGGCTGCCCCGCAGCTCCCAGTGCAGAAG AGAGAGCAGGCTGGGCTGCCCAGCAGCTCCCAGTGCAGAAG < 41bp 0.625618672694245 0.833004021908292 0.119537175 0.23306325 prediction 0.414770698428095 Functional Gain - PNLIPRP2 ENSG00000165862 intronic Human other chr10:118386827 chr10:118386828 . . 0 22 hm5C_associated_SNPs_125978 0 0 0 0 1 PNLIPRP2 chr10:118386790 3'AG 118386790 Downstream 39bp
chr13 78327370 78327370 1 + C T UCEC 78327369 + 78327349 78327389 41 AGAAGTATGCCTAACCTAGCCCGGATGCCAAGTACAACTGC AGAAGTATGCCTAACCTAGCCTGGATGCCAAGTACAACTGC < 41bp 0.629175457503592 0.836560311395113 0.40535367 0.31144637 prediction 0.414769707783043 Functional Gain - SLAIN1 ENSG00000139737 CDS Human protein_coding chr13:78327369 chr13:78327370 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_125979 0 0 1 0 1 SLAIN1 chr13:78327338 3'AG 78327338 Downstream 33bp
chr11 65178737 65178737 1 + C T SKCM 65178736 + 65178716 65178756 41 AGGGGATCAGGCGAGTGAAGCCGAAGCGCACCACATCCTTC AGGGGATCAGGCGAGTGAAGCTGAAGCGCACCACATCCTTC < 41bp 0.467569688426577 0.707384573622097 0.14481023 0.16777551 prediction 0.414769147244193 Functional Gain - FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65178736 chr11:65178737 nonsynonymous SNV 0.992 5 22 hm5C_associated_SNPs_125980 0 0 1 0 1 FRMD8 chr11:65178713 3'AG 65178713 Downstream 25bp
chr22 40802474 40802474 1 + C G THCA 40802470 + 40802450 40802490 41 GCTGATCCAGTCAGAGAACTCGGCCTCCATCTTCAACACGC GCTGATCCAGTCAGAGAACTCGGCGTCCATCTTCAACACGC < 41bp 0.675226554782498 0.882610421849335 0.7244177 0.8807856 prediction 0.414767734133674 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40802470 chr22:40802474 synonymous SNV . 0 25 hm5C_associated_SNPs_125981 0 0 0 1 1 SGSM3 chr22:40802442 3'AG 40802442 Downstream 33bp
chr8 23198554 23198554 1 + C T COAD 23198553 + 23198533 23198573 41 CCCCAGGGAAGCCAAACATGCCGCAGACCACGCGGGAATTC CCCCAGGGAAGCCAAACATGCTGCAGACCACGCGGGAATTC < 41bp 0.627976994625043 0.835349738661908 0.84057677 0.5001737 prediction 0.41474548807373 Functional Gain - LOXL2 ENSG00000134013 CDS Human protein_coding chr8:23198553 chr8:23198554 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_125985 0 0 0 0 1 LOXL2 chr8:23198539 3'AG 23198539 Downstream 16bp
chr5 63905068 63905068 1 + A G rs889248 63905065 + 63905045 63905085 41 GGTTCTTTGGGCTGTGTTGTCTCATCTCAAGCTAGGTGGCT GGTTCTTTGGGCTGTGTTGTCTCGTCTCAAGCTAGGTGGCT < 41bp 0.484808594162789 0.707372716698914 0.121328235 0.12494236 prediction 0.414745433397828 Functional Gain - RGS7BP ENSG00000186479 CDS Human protein_coding chr5:63905065 chr5:63905068 nonsynonymous SNV 0.974 0 24 hm5C_associated_SNPs_125986 0 0 0 0 1 RGS7BP chr5:63904988 3'AG 63904988 Downstream 81bp
chrX 41200777 41200777 1 + A G LIHC 41200774 + 41200754 41200794 41 AGTTCAGGGTGGAGTTCTAGCAAAGATAAGGATGCGTATAG AGTTCAGGGTGGAGTTCTAGCAAGGATAAGGATGCGTATAG < 41bp 0.576612457440829 0.783978661448995 0.40241838 0.77055717 prediction 0.414732408016332 Functional Gain - DDX3X ENSG00000215301 CDS Human protein_coding chrX:41200774 chrX:41200777 synonymous SNV . 0 24 hm5C_associated_SNPs_125988 0 0 1 0 2 DDX3X chrX:41200737 3'AG 41200737 Downstream 41bp
chrX 41200777 41200777 1 + A G LIHC 41200774 + 41200754 41200794 41 AGTTCAGGGTGGAGTTCTAGCAAAGATAAGGATGCGTATAG AGTTCAGGGTGGAGTTCTAGCAAGGATAAGGATGCGTATAG < 41bp 0.576612457440829 0.783978661448995 0.40241838 0.77055717 prediction 0.414732408016332 Functional Gain - DDX3X ENSG00000215301 CDS Human protein_coding chrX:41200774 chrX:41200777 synonymous SNV . 0 24 hm5C_associated_SNPs_125988 0 0 1 0 2 DDX3X chrX:41200869 5'GT 41200869 Upstream 93bp
chr17 78176190 78176190 1 + C A STAD 78176186 + 78176166 78176206 41 CTCTTACACCATGAAGGATACTGCCGCGCACGGCACCATCC CTCTTACACCATGAAGGATACTGCAGCGCACGGCACCATCC < 41bp 0.284955315666866 0.707364667747772 0.25854266 0.3545825 prediction 0.414729335495544 Functional Gain - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78176186 chr17:78176190 synonymous SNV . 0 25 hm5C_associated_SNPs_125989 0 0 0 0 1 CARD14 chr17:78176219 5'GT 78176219 Upstream 30bp
chr11 65392933 65392933 1 + C T BLCA 65392932 + 65392912 65392952 41 GGAGCGCAGCTTGGAGACAGCCCGGGCCGAGCCCCCGGACC GGAGCGCAGCTTGGAGACAGCTCGGGCCGAGCCCCCGGACC < 41bp 0.609510568678361 0.816874155223786 0.15645799 0.21227169 prediction 0.414727173090849 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65392932 chr11:65392933 synonymous SNV . 0 22 hm5C_associated_SNPs_125991 0 0 1 0 2 PCNX3 chr11:65392876 3'AG 65392876 Downstream 58bp
chr11 65392933 65392933 1 + C T BLCA 65392932 + 65392912 65392952 41 GGAGCGCAGCTTGGAGACAGCCCGGGCCGAGCCCCCGGACC GGAGCGCAGCTTGGAGACAGCTCGGGCCGAGCCCCCGGACC < 41bp 0.609510568678361 0.816874155223786 0.15645799 0.21227169 prediction 0.414727173090849 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65392932 chr11:65392933 synonymous SNV . 0 22 hm5C_associated_SNPs_125991 0 0 1 0 2 PCNX3 chr11:65392981 5'GT 65392981 Upstream 49bp
chr7 73458248 73458248 1 + C A STAD 73458244 + 73458224 73458264 41 GTGTATACCCAGGTGGCGTGCTCCCAGGTGAGAGCAAGGAG GTGTATACCCAGGTGGCGTGCTCCAAGGTGAGAGCAAGGAG < 41bp 0.306759225984743 0.707361403170975 0.21623594 0.91317046 prediction 0.414722806341949 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73458244 chr7:73458248 nonsynonymous SNV 0.960 2 25 hm5C_associated_SNPs_125992 0 0 0 0 2 ELN chr7:73458209 3'AG 73458209 Downstream 40bp
chr7 73458248 73458248 1 + C A STAD 73458244 + 73458224 73458264 41 GTGTATACCCAGGTGGCGTGCTCCCAGGTGAGAGCAAGGAG GTGTATACCCAGGTGGCGTGCTCCAAGGTGAGAGCAAGGAG < 41bp 0.306759225984743 0.707361403170975 0.21623594 0.91317046 prediction 0.414722806341949 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73458244 chr7:73458248 nonsynonymous SNV 0.960 2 25 hm5C_associated_SNPs_125992 0 0 0 0 2 ELN chr7:73458250 5'GT 73458250 Upstream 3bp
chr3 139654298 139654298 1 + C G rs74884664 139654294 + 139654274 139654314 41 GGCAGCGGCGGTGGCGGGGACAGCCGGCAGCGCCGCCTCCT GGCAGCGGCGGTGGCGGGGACAGCGGGCAGCGCCGCCTCCT < 41bp 0.618836957643941 0.826194858568851 0.76797557 0.85463595 prediction 0.414715801849821 Functional Gain - CLSTN2 ENSG00000158258 CDS Human protein_coding chr3:139654294 chr3:139654298 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_125993 0 0 0 0 1 CLSTN2 chr3:139654325 5'GT 139654325 Upstream 28bp
chr6 35745342 35745342 1 + T C COAD 35745339 + 35745319 35745359 41 TGCCCCCAGGGCCAGAATAACCATGATCTGCTTGCCCCAGG TGCCCCCAGGGCCAGAATAACCACGATCTGCTTGCCCCAGG < 41bp 0.502112882672541 0.709463037909745 0.35166514 0.4095049 prediction 0.414700310474407 Functional Gain - CLPSL2 ENSG00000196748 CDS Human protein_coding chr6:35745339 chr6:35745342 nonsynonymous SNV 0.017 1 24 hm5C_associated_SNPs_125995 0 0 0 0 1 CLPSL2 chr6:35745358 5'GT 35745358 Upstream 17bp
chr9 34339161 34339161 1 + A G SKCM 34339158 + 34339138 34339178 41 GCATTCATCACTGGACTCCTCCCAAAGGTAGAGGCCAGAGG GCATTCATCACTGGACTCCTCCCGAAGGTAGAGGCCAGAGG < 41bp 0.60495302386097 0.812296964023961 0.24667472 0.22148705 prediction 0.414687880325982 Functional Gain - NUDT2 ENSG00000164978 CDS Human protein_coding chr9:34339158 chr9:34339161 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_125997 0 0 1 0 1 NUDT2 chr9:34339164 5'GT 34339164 Upstream 4bp
chr12 56625319 56625319 1 + C T SKCM 56625318 + 56625298 56625338 41 TCTGACTGGACGGGCTGCATCCCCAGCTGCAGACAATTCCA TCTGACTGGACGGGCTGCATCTCCAGCTGCAGACAATTCCA < 41bp 0.625659627394147 0.832999141223361 0.035853773 0.93841326 prediction 0.414679027658427 Functional Gain - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56625318 chr12:56625319 synonymous SNV . 0 22 hm5C_associated_SNPs_126000 0 0 1 0 2 SLC39A5 chr12:56625250 3'AG 56625250 Downstream 70bp
chr12 56625319 56625319 1 + C T SKCM 56625318 + 56625298 56625338 41 TCTGACTGGACGGGCTGCATCCCCAGCTGCAGACAATTCCA TCTGACTGGACGGGCTGCATCTCCAGCTGCAGACAATTCCA < 41bp 0.625659627394147 0.832999141223361 0.035853773 0.93841326 prediction 0.414679027658427 Functional Gain - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56625318 chr12:56625319 synonymous SNV . 0 22 hm5C_associated_SNPs_126000 0 0 1 0 2 SLC39A5 chr12:56625345 5'GT 56625345 Upstream 27bp
chr17 47299547 47299547 1 + T C KIRP 47299545 + 47299525 47299565 41 CACCCCCACCAGGATTTGGGCCTGATGAGCCCAGCTGGGTG CACCCCCACCAGGATTTGGGCCCGATGAGCCCAGCTGGGTG < 41bp 0.428869056615389 0.707330957515966 0.2786532 0.24581856 prediction 0.414661915031933 Functional Gain - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47299545 chr17:47299547 synonymous SNV . 0 23 hm5C_associated_SNPs_126003 0 0 0 0 2 ABI3 chr17:47299453 3'AG 47299453 Downstream 95bp
chr17 47299547 47299547 1 + T C KIRP 47299545 + 47299525 47299565 41 CACCCCCACCAGGATTTGGGCCTGATGAGCCCAGCTGGGTG CACCCCCACCAGGATTTGGGCCCGATGAGCCCAGCTGGGTG < 41bp 0.428869056615389 0.707330957515966 0.2786532 0.24581856 prediction 0.414661915031933 Functional Gain - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47299545 chr17:47299547 synonymous SNV . 0 23 hm5C_associated_SNPs_126003 0 0 0 0 2 ABI3 chr17:47299587 5'GT 47299587 Upstream 41bp
chrX 30268640 30268640 1 + T A ACC 30268638 + 30268618 30268658 41 GGGGTCAGAAGAGTAAGCTCCGTGCTCGTGAGAAACGCCGC GGGGTCAGAAGAGTAAGCTCCGAGCTCGTGAGAAACGCCGC < 41bp 0.528461956792797 0.735791240721309 0.4145618 0.71045583 prediction 0.414658567857024 Functional Gain - MAGEB1 ENSG00000214107 CDS Human protein_coding chrX:30268638 chrX:30268640 synonymous SNV . 0 23 hm5C_associated_SNPs_126005 0 0 1 0 1 MAGEB1 chrX:30268551 3'AG 30268551 Downstream 90bp
chr11 111864294 111864294 1 + T C UCEC 111864291 + 111864271 111864311 41 GAAGAAGCACTCCGGAAACTCTCTGATGTCAGTTACCACCA GAAGAAGCACTCCGGAAACTCTCCGATGTCAGTTACCACCA < 41bp 0.585122884508566 0.792449847729442 0.15540445 0.77910244 prediction 0.414653926441752 Functional Gain - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111864291 chr11:111864294 synonymous SNV . 0 24 hm5C_associated_SNPs_126006 0 0 0 0 2 DIXDC1 chr11:111864220 3'AG 111864220 Downstream 75bp
chr11 111864294 111864294 1 + T C UCEC 111864291 + 111864271 111864311 41 GAAGAAGCACTCCGGAAACTCTCTGATGTCAGTTACCACCA GAAGAAGCACTCCGGAAACTCTCCGATGTCAGTTACCACCA < 41bp 0.585122884508566 0.792449847729442 0.15540445 0.77910244 prediction 0.414653926441752 Functional Gain - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111864291 chr11:111864294 synonymous SNV . 0 24 hm5C_associated_SNPs_126006 0 0 0 0 2 DIXDC1 chr11:111864312 5'GT 111864312 Upstream 19bp
chr9 124533001 124533001 1 + C T SKCM 124533000 + 124532980 124533020 41 GGTGATTGAGAACGATCTTTCCGGGTAAGAGCTGCCAGCCA GGTGATTGAGAACGATCTTTCTGGGTAAGAGCTGCCAGCCA < 41bp 0.596121064200351 0.803442935297735 0.9250876 0.89280725 prediction 0.414643742194767 Functional Gain - DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124533000 chr9:124533001 synonymous SNV . 0 22 hm5C_associated_SNPs_126007 0 0 1 0 1 DAB2IP chr9:124533003 5'GT 124533003 Upstream 3bp
chr10 131565099 131565099 1 + C T UCEC 131565098 + 131565078 131565118 41 AGTGGTCTGCAGCAGCGGAGCCGTGGGCAACTACTCCGGAG AGTGGTCTGCAGCAGCGGAGCTGTGGGCAACTACTCCGGAG < 41bp 0.549673143303636 0.75699232844565 0.8842956 0.67662406 prediction 0.414638370284027 Functional Gain - MGMT ENSG00000170430 CDS Human protein_coding chr10:131565098 chr10:131565099 synonymous SNV . 0 22 hm5C_associated_SNPs_126009 0 0 0 0 1 MGMT chr10:131565052 3'AG 131565052 Downstream 48bp
chr22 24035109 24035109 1 + T C rs535702654 24035106 + 24035086 24035126 41 GGGTCTGTAAAGAACCAACCCAGTGAGGAGCTGCCTGACAT GGGTCTGTAAAGAACCAACCCAGCGAGGAGCTGCCTGACAT < 41bp 0.561200860805543 0.768511107059953 0.36979502 0.1950888 prediction 0.414620492508818 Functional Gain - RGL4 ENSG00000159496 CDS Human protein_coding chr22:24035106 chr22:24035109 synonymous SNV . 0 24 hm5C_associated_SNPs_126012 0 0 0 0 1 RGL4 chr22:24035178 5'GT 24035178 Upstream 70bp
chr10 127677225 127677225 1 + C A rs140872451 127677221 + 127677201 127677241 41 TGGGGAGTGTGAGTACAGCCCACTCGTCTCAGTGTCTACAA TGGGGAGTGTGAGTACAGCCCACTAGTCTCAGTGTCTACAA < 41bp 0.291034830954428 0.707307826606701 0.018828243 0.05039072 prediction 0.414615653213401 Functional Gain - FANK1 ENSG00000203780 CDS Human protein_coding chr10:127677221 chr10:127677225 synonymous SNV . 0 25 hm5C_associated_SNPs_126015 0 0 0 0 1 FANK1 chr10:127677244 5'GT 127677244 Upstream 20bp
chr15 42127274 42127274 1 + C T SKCM 42127273 + 42127253 42127293 41 CCAGCTGAGCGCCGCCTGCCCCTGAGCTTCGTGCTGGATGT CCAGCTGAGCGCCGCCTGCCCTTGAGCTTCGTGCTGGATGT < 41bp 0.621686386902778 0.828990506795652 0.23920721 0.112677574 prediction 0.414608239785746 Functional Gain - JMJD7;JMJD7-PLA2G4B ENSG00000168970;ENSG00000243708;ENSG00000243789 CDS Human other chr15:42127273 chr15:42127274 synonymous SNV . 0 22 hm5C_associated_SNPs_126017 0 0 1 0 1 JMJD7;JMJD7-PLA2G4B chr15:42127176 3'AG 42127176 Downstream 99bp
chr2 228395887 228395887 1 + C A UCEC 228395886 + 228395866 228395906 41 TCGAGTAATTTTGGAGGTTTCCCCACAGCAAGTCACTCTCC TCGAGTAATTTTGGAGGTTTCACCACAGCAAGTCACTCTCC < 41bp 0.604020433809939 0.811322909317876 0.24175617 0.22880524 prediction 0.414604951015874 Functional Gain - AGFG1 ENSG00000173744 CDS Human protein_coding chr2:228395886 chr2:228395887 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_126018 0 0 1 0 2 AGFG1 chr2:228395807 3'AG 228395807 Downstream 81bp
chr2 228395887 228395887 1 + C A UCEC 228395886 + 228395866 228395906 41 TCGAGTAATTTTGGAGGTTTCCCCACAGCAAGTCACTCTCC TCGAGTAATTTTGGAGGTTTCACCACAGCAAGTCACTCTCC < 41bp 0.604020433809939 0.811322909317876 0.24175617 0.22880524 prediction 0.414604951015874 Functional Gain - AGFG1 ENSG00000173744 CDS Human protein_coding chr2:228395886 chr2:228395887 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_126018 0 0 1 0 2 AGFG1 chr2:228395926 5'GT 228395926 Upstream 40bp
chr10 22678099 22678099 1 + T G LIHC 22678095 + 22678075 22678115 41 TTCCCATCGCTTAGCTTTCACAGCTGGTAGTTAACGCAGGA TTCCCATCGCTTAGCTTTCACAGCGGGTAGTTAACGCAGGA < 41bp 0.500427726754218 0.707728695797104 0.24370849 0.5247243 prediction 0.41460193808577 Functional Gain - SPAG6 ENSG00000077327 CDS Human protein_coding chr10:22678095 chr10:22678099 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_126020 0 0 0 0 1 SPAG6 chr10:22678089 3'AG 22678089 Downstream 11bp
chr7 73478005 73478005 1 + C T SKCM 73478004 + 73477984 73478024 41 GAGTCGGAGGGCTTGGAGTTCCAGGTGTTGGGGGCCTTGGA GAGTCGGAGGGCTTGGAGTTCTAGGTGTTGGGGGCCTTGGA < 41bp 0.570333796942281 0.777630913066004 0.90821683 0.8462125 prediction 0.414594232247447 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73478004 chr7:73478005 nonsynonymous SNV 0.007 1 22 hm5C_associated_SNPs_126021 0 0 0 0 2 ELN chr7:73477951 3'AG 73477951 Downstream 55bp
chr7 73478005 73478005 1 + C T SKCM 73478004 + 73477984 73478024 41 GAGTCGGAGGGCTTGGAGTTCCAGGTGTTGGGGGCCTTGGA GAGTCGGAGGGCTTGGAGTTCTAGGTGTTGGGGGCCTTGGA < 41bp 0.570333796942281 0.777630913066004 0.90821683 0.8462125 prediction 0.414594232247447 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73478004 chr7:73478005 nonsynonymous SNV 0.007 1 22 hm5C_associated_SNPs_126021 0 0 0 0 2 ELN chr7:73478025 5'GT 73478025 Upstream 21bp
chr1 40881041 40881041 1 + C A rs209606 40881040 + 40881020 40881060 41 TGTTCCATCCCCTTCTTCTTCCGGTTCCAGAAAGGTGAGTC TGTTCCATCCCCTTCTTCTTCAGGTTCCAGAAAGGTGAGTC < 41bp 0.439104038653188 0.707291022265359 0.47581425 0.82280767 prediction 0.414582044530719 Functional Gain - SMAP2 ENSG00000084070 CDS Human protein_coding chr1:40881040 chr1:40881041 synonymous SNV . 0 22 hm5C_associated_SNPs_126023 0 0 1 0 2 SMAP2 chr1:40880944 3'AG 40880944 Downstream 98bp
chr1 40881041 40881041 1 + C A rs209606 40881040 + 40881020 40881060 41 TGTTCCATCCCCTTCTTCTTCCGGTTCCAGAAAGGTGAGTC TGTTCCATCCCCTTCTTCTTCAGGTTCCAGAAAGGTGAGTC < 41bp 0.439104038653188 0.707291022265359 0.47581425 0.82280767 prediction 0.414582044530719 Functional Gain - SMAP2 ENSG00000084070 CDS Human protein_coding chr1:40881040 chr1:40881041 synonymous SNV . 0 22 hm5C_associated_SNPs_126023 0 0 1 0 2 SMAP2 chr1:40881053 5'GT 40881053 Upstream 13bp
chr1 160160765 160160765 1 + C T COAD 160160764 + 160160744 160160784 41 CACTCCTCTACCATGAACCCCCCGAGGATGACAAGGCCTCA CACTCCTCTACCATGAACCCCTCGAGGATGACAAGGCCTCA < 41bp 0.450021014664205 0.707279439280726 0.05923584 0.598609 prediction 0.414558878561452 Functional Gain - CASQ1 ENSG00000143318 CDS Human protein_coding chr1:160160764 chr1:160160765 nonsynonymous SNV 0.991 0 22 hm5C_associated_SNPs_126025 0 0 0 0 1 CASQ1 chr1:160160820 5'GT 160160820 Upstream 56bp
chr16 19191795 19191795 1 + C T SKCM 19191794 + 19191774 19191814 41 CTGACCCCACGGACCAATTCCCCGGATGGAAGACGCTCGTC CTGACCCCACGGACCAATTCCTCGGATGGAAGACGCTCGTC < 41bp 0.643066729956432 0.850336535051895 0.36485457 0.26772287 prediction 0.414539610190927 Functional Gain - SYT17 ENSG00000103528 CDS Human protein_coding chr16:19191794 chr16:19191795 nonsynonymous SNV 0.449 4 22 hm5C_associated_SNPs_126030 0 0 0 0 2 SYT17 chr16:19191713 3'AG 19191713 Downstream 83bp
chr16 19191795 19191795 1 + C T SKCM 19191794 + 19191774 19191814 41 CTGACCCCACGGACCAATTCCCCGGATGGAAGACGCTCGTC CTGACCCCACGGACCAATTCCTCGGATGGAAGACGCTCGTC < 41bp 0.643066729956432 0.850336535051895 0.36485457 0.26772287 prediction 0.414539610190927 Functional Gain - SYT17 ENSG00000103528 CDS Human protein_coding chr16:19191794 chr16:19191795 nonsynonymous SNV 0.449 4 22 hm5C_associated_SNPs_126030 0 0 0 0 2 SYT17 chr16:19191861 5'GT 19191861 Upstream 67bp
chr22 21140399 21140399 1 + T C LAML 21140397 + 21140377 21140417 41 CTGTTTGACAAAAATGGCAACATGGCAGGCATCTCAGACCA CTGTTTGACAAAAATGGCAACACGGCAGGCATCTCAGACCA < 41bp 0.423862097577382 0.707259602054243 0.18709257 0.16532072 prediction 0.414519204108486 Functional Gain - SERPIND1 ENSG00000099937 CDS Human protein_coding chr22:21140397 chr22:21140399 nonsynonymous SNV 0.254 1 23 hm5C_associated_SNPs_126033 0 0 1 0 1 SERPIND1 chr22:21140436 5'GT 21140436 Upstream 38bp
chr8 86354322 86354322 1 + C T SKCM 86354321 + 86354301 86354341 41 GTGCTGAGAGGGGGTCCTCTCCCTGGACCCTACCGACTTCG GTGCTGAGAGGGGGTCCTCTCTCTGGACCCTACCGACTTCG < 41bp 0.618563865923882 0.825820854861157 0.0417566 0.059390664 prediction 0.414513977874549 Functional Gain - CA3 ENSG00000164879 CDS Human protein_coding chr8:86354321 chr8:86354322 nonsynonymous SNV 0.971 0 22 hm5C_associated_SNPs_126035 0 0 0 0 3 CA3 chr8:86354302 3'AG 86354302 Downstream 21bp
chr8 86354322 86354322 1 + C T SKCM 86354321 + 86354301 86354341 41 GTGCTGAGAGGGGGTCCTCTCCCTGGACCCTACCGACTTCG GTGCTGAGAGGGGGTCCTCTCTCTGGACCCTACCGACTTCG < 41bp 0.618563865923882 0.825820854861157 0.0417566 0.059390664 prediction 0.414513977874549 Functional Gain - CA3 ENSG00000164879 CDS Human protein_coding chr8:86354321 chr8:86354322 nonsynonymous SNV 0.971 0 22 hm5C_associated_SNPs_126035 0 0 0 0 3 CA3 chr8:86354344 5'GT 86354344 Upstream 23bp
chr8 86354322 86354322 1 + C T SKCM 86354321 + 86354301 86354341 41 GTGCTGAGAGGGGGTCCTCTCCCTGGACCCTACCGACTTCG GTGCTGAGAGGGGGTCCTCTCTCTGGACCCTACCGACTTCG < 41bp 0.618563865923882 0.825820854861157 0.0417566 0.059390664 prediction 0.414513977874549 Functional Gain - CA3 ENSG00000164879 CDS Human protein_coding chr8:86354321 chr8:86354322 nonsynonymous SNV 0.971 0 22 hm5C_associated_SNPs_126035 0 0 0 0 3 CA3 chr8:86354420 5'GT 86354420 Upstream 99bp
chr3 38182291 38182291 1 + A G UCEC 38182288 + 38182268 38182308 41 TTGTCTCTGATGATTACCTGCAGAGCAAGGAATGTGACTTC TTGTCTCTGATGATTACCTGCAGGGCAAGGAATGTGACTTC < 41bp 0.598642266516505 0.805892446173301 0.2725826 0.50870854 prediction 0.414500359313592 Functional Gain - MYD88 ENSG00000172936 CDS Human protein_coding chr3:38182288 chr3:38182291 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_126036 0 0 0 0 2 MYD88 chr3:38182248 3'AG 38182248 Downstream 44bp
chr3 38182291 38182291 1 + A G UCEC 38182288 + 38182268 38182308 41 TTGTCTCTGATGATTACCTGCAGAGCAAGGAATGTGACTTC TTGTCTCTGATGATTACCTGCAGGGCAAGGAATGTGACTTC < 41bp 0.598642266516505 0.805892446173301 0.2725826 0.50870854 prediction 0.414500359313592 Functional Gain - MYD88 ENSG00000172936 CDS Human protein_coding chr3:38182288 chr3:38182291 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_126036 0 0 0 0 2 MYD88 chr3:38182339 5'GT 38182339 Upstream 49bp
chr4 102751345 102751345 1 + C T SKCM 102751344 + 102751324 102751364 41 GAAGACTACATCTCTGTAATCCAGAGTATCATATTCAAAGG GAAGACTACATCTCTGTAATCTAGAGTATCATATTCAAAGG < 41bp 0.489764529628086 0.707249365625804 0.4261874 0.08285579 prediction 0.414498731251608 Functional Gain - BANK1 ENSG00000153064 CDS Human protein_coding chr4:102751344 chr4:102751345 stopgain 0.020 0 22 hm5C_associated_SNPs_126037 0 0 0 0 1 BANK1 chr4:102751363 5'GT 102751363 Upstream 19bp
chr18 77067158 77067158 1 + A G SKCM 77067155 + 77067135 77067175 41 TGAGTCTCGGGCCGGCGTTACTGAGGAGACTGAGTTCGCAG TGAGTCTCGGGCCGGCGTTACTGGGGAGACTGAGTTCGCAG < 41bp 0.605350812160313 0.812595312091335 0.56859386 0.90856165 prediction 0.414488999862045 Functional Gain - ATP9B ENSG00000166377 CDS Human protein_coding chr18:77067155 chr18:77067158 nonsynonymous SNV 0.129 0 24 hm5C_associated_SNPs_126041 0 0 1 0 1 ATP9B chr18:77067234 5'GT 77067234 Upstream 77bp
chr16 67207894 67207894 1 + C T rs569921017 67207893 + 67207873 67207913 41 AGGCAGGAGGACACCGAGTTCCCCGTGTTGGCCTCCAGGTC AGGCAGGAGGACACCGAGTTCTCCGTGTTGGCCTCCAGGTC < 41bp 0.617351481032191 0.824593660022316 0.08673689 0.11573368 prediction 0.41448435798025 Functional Gain - NOL3 ENSG00000140939 CDS Human protein_coding chr16:67207893 chr16:67207894 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_126042 0 0 1 0 1 NOL3 chr16:67207949 5'GT 67207949 Upstream 56bp
chr11 76831935 76831935 1 + T C UCEC 76831932 + 76831912 76831952 41 GAGTTCCTGCTCCGAGTCTTCACTGATGTGCCCTCCAACTG GAGTTCCTGCTCCGAGTCTTCACCGATGTGCCCTCCAACTG < 41bp 0.531633656694338 0.738869763369068 0.21480358 0.18426096 prediction 0.41447221334946 Functional Gain - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76831932 chr11:76831935 synonymous SNV . 0 24 hm5C_associated_SNPs_126044 0 0 0 0 1 CAPN5 chr11:76831955 5'GT 76831955 Upstream 21bp
chr9 100234702 100234702 1 + A G rs115297535 100234699 + 100234679 100234719 41 CTTGTTGTTCTGTACGATACCTCAGGAGAAGATGATATCAA CTTGTTGTTCTGTACGATACCTCGGGAGAAGATGATATCAA < 41bp 0.581392944802788 0.788629012166057 0.0042686164 0.0036164224 prediction 0.414472134726538 Functional Gain - TDRD7 ENSG00000196116 CDS Human protein_coding chr9:100234699 chr9:100234702 synonymous SNV . 0 24 hm5C_associated_SNPs_126045 1 0 0 0 1 TDRD7 chr9:100234777 5'GT 100234777 Upstream 76bp
chr15 25479281 25479281 1 + T C PRAD 25479279 + 25479259 25479299 41 CGTCAGCCAGGTGCTCAGCCCATGGTGTGCTGAAGCTCTGA CGTCAGCCAGGTGCTCAGCCCACGGTGTGCTGAAGCTCTGA < 41bp 0.510337533081104 0.717565530681666 0.79383606 0.8407142 prediction 0.414455995201125 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25479279 chr15:25479281 . . 0 23 hm5C_associated_SNPs_126047 0 0 0 0 2 SNHG14 chr15:25479205 3'AG 25479205 Downstream 77bp
chr15 25479281 25479281 1 + T C PRAD 25479279 + 25479259 25479299 41 CGTCAGCCAGGTGCTCAGCCCATGGTGTGCTGAAGCTCTGA CGTCAGCCAGGTGCTCAGCCCACGGTGTGCTGAAGCTCTGA < 41bp 0.510337533081104 0.717565530681666 0.79383606 0.8407142 prediction 0.414455995201125 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25479279 chr15:25479281 . . 0 23 hm5C_associated_SNPs_126047 0 0 0 0 2 SNHG14 chr15:25479350 5'GT 25479350 Upstream 70bp
chr16 12061496 12061496 1 + C T rs561432842 12061495 + 12061475 12061515 41 CTGGTGATGAAATTATTCTTCCGAGAGGCCTCGAGTACACG CTGGTGATGAAATTATTCTTCTGAGAGGCCTCGAGTACACG < 41bp 0.561834397248602 0.769059895324394 0.5598111 0.28901917 prediction 0.414450996151585 Functional Gain - TNFRSF17 ENSG00000048462 CDS Human protein_coding chr16:12061495 chr16:12061496 nonsynonymous SNV 0.003 2 22 hm5C_associated_SNPs_126050 0 0 0 0 1 TNFRSF17 chr16:12061427 3'AG 12061427 Downstream 70bp
chr1 27121381 27121381 1 + C A GBM 27121380 + 27121360 27121400 41 TTAGCTGTAGACAAGGGCTACCGGATTGCAGAGGGAAATGA TTAGCTGTAGACAAGGGCTACAGGATTGCAGAGGGAAATGA < 41bp 0.64109010435627 0.848314748801768 0.47490746 0.6172283 prediction 0.414449288890997 Functional Gain - PIGV ENSG00000060642 CDS Human protein_coding chr1:27121380 chr1:27121381 synonymous SNV . 0 22 hm5C_associated_SNPs_126052 0 0 0 0 1 PIGV chr1:27121294 3'AG 27121294 Downstream 88bp
chr10 73983738 73983738 1 + T A SKCM 73983734 + 73983714 73983754 41 TGGAAGTTCTGTCACTGGATCTGGTTTCAGTGTCTCAGACC TGGAAGTTCTGTCACTGGATCTGGATTCAGTGTCTCAGACC < 41bp 0.690407928551729 0.897628089420249 0.25325578 0.31452143 prediction 0.41444032173704 Functional Gain - ANAPC16 ENSG00000166295 CDS Human protein_coding chr10:73983734 chr10:73983738 synonymous SNV . 0 25 hm5C_associated_SNPs_126055 0 0 1 0 2 ANAPC16 chr10:73983646 3'AG 73983646 Downstream 93bp
chr10 73983738 73983738 1 + T A SKCM 73983734 + 73983714 73983754 41 TGGAAGTTCTGTCACTGGATCTGGTTTCAGTGTCTCAGACC TGGAAGTTCTGTCACTGGATCTGGATTCAGTGTCTCAGACC < 41bp 0.690407928551729 0.897628089420249 0.25325578 0.31452143 prediction 0.41444032173704 Functional Gain - ANAPC16 ENSG00000166295 CDS Human protein_coding chr10:73983734 chr10:73983738 synonymous SNV . 0 25 hm5C_associated_SNPs_126055 0 0 1 0 2 ANAPC16 chr10:73983814 5'GT 73983814 Upstream 77bp
chr18 33848581 33848581 1 + T C rs1057251 33848578 + 33848558 33848598 41 TGTAGGATCTCAGGTGCTCCCTGTGTTGAAAGAGAATGTGG TGTAGGATCTCAGGTGCTCCCTGCGTTGAAAGAGAATGTGG < 41bp 0.550676706164109 0.757890570447094 0.0408718 0.020415127 prediction 0.414427728565971 Functional Gain - MOCOS ENSG00000075643 CDS Human protein_coding chr18:33848578 chr18:33848581 nonsynonymous SNV 0.980 1 24 hm5C_associated_SNPs_126056 0 0 1 0 1 MOCOS chr18:33848496 3'AG 33848496 Downstream 86bp
chr12 6560517 6560517 1 + C A LIHC 6560516 + 6560496 6560536 41 GAGGGCAGCACCATCCCCATCCAGGAGGATTACCGAAAACC GAGGGCAGCACCATCCCCATCAAGGAGGATTACCGAAAACC < 41bp 0.447481127385015 0.707213575487642 0.8100276 0.8935655 prediction 0.414427150975285 Functional Gain - CD27 ENSG00000139193 CDS Human protein_coding chr12:6560516 chr12:6560517 nonsynonymous SNV 0.979 4 22 hm5C_associated_SNPs_126057 0 0 0 0 1 CD27 chr12:6560434 3'AG 6560434 Downstream 84bp
chr22 31524557 31524557 1 + C T GBM 31524556 + 31524536 31524576 41 GGACGGAAGAGCCACCGACTCCAGGTGACGCAGCACAGCTA GGACGGAAGAGCCACCGACTCTAGGTGACGCAGCACAGCTA < 41bp 0.616722068590537 0.823929996766442 0.92155004 0.70951873 prediction 0.414415856351811 Functional Gain - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31524556 chr22:31524557 stopgain 1.000 0 22 hm5C_associated_SNPs_126059 0 0 0 0 1 INPP5J chr22:31524640 5'GT 31524640 Upstream 84bp
chr17 3402271 3402271 1 + C A rs78677072 3402270 + 3402250 3402290 41 CCCACTGGGCGGAGACTGTACCGTGTACCCCGTGTTTGTGA CCCACTGGGCGGAGACTGTACAGTGTACCCCGTGTTTGTGA < 41bp 0.446423854096299 0.70720091897151 0.1733408 0.17036048 prediction 0.414401837943021 Functional Gain - ASPA ENSG00000108381 CDS Human protein_coding chr17:3402270 chr17:3402271 synonymous SNV . 0 22 hm5C_associated_SNPs_126062 0 0 0 0 1 ASPA chr17:3402185 3'AG 3402185 Downstream 87bp
chr1 10003514 10003514 1 + T G rs116413132 10003511 + 10003491 10003531 41 TGCGACCGAGATGTTCCACTCGCTGGCGTCCGGGCCGCTGG TGCGACCGAGATGTTCCACTCGCGGGCGTCCGGGCCGCTGG < 41bp 0.728403104390068 0.935601345238972 0.35348573 0.9222774 prediction 0.414396481697807 Functional Gain - NMNAT1 ENSG00000228150 ncRNA_intronic Human sense_intronic chr1:10003511 chr1:10003514 . . 0 24 hm5C_associated_SNPs_126063 0 0 1 0 1 NMNAT1 chr1:10003573 5'GT 10003573 Upstream 60bp
chr1 10218427 10218427 1 + C T UCEC 10218426 + 10218406 10218446 41 TTCTTTAGATGTTGAGCATACCGGAGCCACCAGTGAGTTTT TTCTTTAGATGTTGAGCATACTGGAGCCACCAGTGAGTTTT < 41bp 0.456158454475184 0.707197743989636 0.7649107 0.30334562 prediction 0.414395487979272 Functional Gain - UBE4B ENSG00000130939 CDS Human protein_coding chr1:10218426 chr1:10218427 synonymous SNV . 0 22 hm5C_associated_SNPs_126064 0 0 1 0 1 UBE4B chr1:10218414 3'AG 10218414 Downstream 14bp
chrX 150817162 150817162 1 + T A STAD 150817158 + 150817138 150817178 41 ACCCGCTGCTGCTGCTGCTGCTGCTGCTATCTCAGACGTAT ACCCGCTGCTGCTGCTGCTGCTGCAGCTATCTCAGACGTAT < 41bp 0.363721865800626 0.707187731813469 0.10989535 0.12336844 prediction 0.414375463626937 Functional Gain - PASD1 ENSG00000166049 CDS Human protein_coding chrX:150817158 chrX:150817162 synonymous SNV . 0 25 hm5C_associated_SNPs_126073 0 0 0 0 2 PASD1 chrX:150817087 3'AG 150817087 Downstream 76bp
chrX 150817162 150817162 1 + T A STAD 150817158 + 150817138 150817178 41 ACCCGCTGCTGCTGCTGCTGCTGCTGCTATCTCAGACGTAT ACCCGCTGCTGCTGCTGCTGCTGCAGCTATCTCAGACGTAT < 41bp 0.363721865800626 0.707187731813469 0.10989535 0.12336844 prediction 0.414375463626937 Functional Gain - PASD1 ENSG00000166049 CDS Human protein_coding chrX:150817158 chrX:150817162 synonymous SNV . 0 25 hm5C_associated_SNPs_126073 0 0 0 0 2 PASD1 chrX:150817174 5'GT 150817174 Upstream 13bp
chr1 36039163 36039163 1 + C G rs376654065 36039159 + 36039139 36039179 41 TCCGCCGCCGCCACGCCTCGCGCCCGGCACTCACCGCCCCA TCCGCCGCCGCCACGCCTCGCGCCGGGCACTCACCGCCCCA < 41bp 0.535413173915069 0.742595269995642 0.15303698 0.4271543 prediction 0.414364192161147 Functional Gain - TFAP2E ENSG00000239636 ncRNA_intronic Human protein_coding chr1:36039159 chr1:36039163 . . 0 25 hm5C_associated_SNPs_126075 0 0 0 0 1 TFAP2E chr1:36039205 5'GT 36039205 Upstream 43bp
chr19 10394908 10394908 1 + C T rs5030381 10394907 + 10394887 10394927 41 CAAGGCCTCAGTCAGTGTGACCGCAGAGGACGAGGGCACCC CAAGGCCTCAGTCAGTGTGACTGCAGAGGACGAGGGCACCC < 41bp 0.622128150777023 0.829308143680111 0.09919459 0.116137356 prediction 0.414359985806177 Functional Gain - ICAM1 ENSG00000090339 CDS Human protein_coding chr19:10394907 chr19:10394908 synonymous SNV . 0 22 hm5C_associated_SNPs_126077 0 0 1 0 1 ICAM1 chr19:10394996 5'GT 10394996 Upstream 89bp
chr17 72363813 72363813 1 + A G ESCA 72363810 + 72363790 72363830 41 GTCTCAGCCATTCCAGGTGGCTGAGGTCTCCACAGGTCACA GTCTCAGCCATTCCAGGTGGCTGGGGTCTCCACAGGTCACA < 41bp 0.463554025260255 0.707174640850433 0.71299505 0.8878497 prediction 0.414349281700867 Functional Gain - GPR142 ENSG00000257008 CDS Human protein_coding chr17:72363810 chr17:72363813 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_126079 0 0 0 0 1 GPR142 chr17:72363887 5'GT 72363887 Upstream 75bp
chr11 60561573 60561573 1 + C A HNSC 60561572 + 60561552 60561592 41 CTGGAGAATGTACCCCAACTCCACGGTGAGTACCCAGGCCT CTGGAGAATGTACCCCAACTCAACGGTGAGTACCCAGGCCT < 41bp 0.634053801346225 0.841224977733807 0.8710576 0.8622425 prediction 0.414342352775165 Functional Gain - MS4A10 ENSG00000172689 CDS Human protein_coding chr11:60561572 chr11:60561573 synonymous SNV . 0 22 hm5C_associated_SNPs_126081 0 0 0 0 1 MS4A10 chr11:60561576 5'GT 60561576 Upstream 4bp
chr7 101183309 101183309 1 + A G COAD 101183306 + 101183286 101183326 41 TTGCTCACCCTGTGCCACGACAGAGAAGGCCCACGGGCCCA TTGCTCACCCTGTGCCACGACAGGGAAGGCCCACGGGCCCA < 41bp 0.613383506782731 0.820548764339603 0.29032385 0.70860004 prediction 0.414330515113745 Functional Gain - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101183306 chr7:101183309 nonsynonymous SNV 0.734 2 24 hm5C_associated_SNPs_126084 0 0 1 0 1 COL26A1 chr7:101183330 5'GT 101183330 Upstream 22bp
chrX 65474970 65474970 1 + T G LUSC 65474967 + 65474947 65474987 41 TTCCTGGATCTATTATTCTGCAGTGGATCCCATCAAGGTAA TTCCTGGATCTATTATTCTGCAGGGGATCCCATCAAGGTAA < 41bp 0.307057732423797 0.707159687794691 0.10719958 0.8052416 prediction 0.414319375589382 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65474967 chrX:65474970 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_126087 0 0 1 0 2 HEPH chrX:65474877 3'AG 65474877 Downstream 94bp
chrX 65474970 65474970 1 + T G LUSC 65474967 + 65474947 65474987 41 TTCCTGGATCTATTATTCTGCAGTGGATCCCATCAAGGTAA TTCCTGGATCTATTATTCTGCAGGGGATCCCATCAAGGTAA < 41bp 0.307057732423797 0.707159687794691 0.10719958 0.8052416 prediction 0.414319375589382 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65474967 chrX:65474970 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_126087 0 0 1 0 2 HEPH chrX:65474983 5'GT 65474983 Upstream 14bp
chr1 25883750 25883750 1 + C G UCEC 25883746 + 25883726 25883766 41 TGCCACGCCTTCCTCTGCACCAAGCGGAAGATGGTCAGCGG TGCCACGCCTTCCTCTGCACCAAGGGGAAGATGGTCAGCGG < 41bp 0.669018491568995 0.876171554320983 0.2110093 0.8961458 prediction 0.414306125503978 Functional Gain - LDLRAP1 ENSG00000157978 CDS Human protein_coding chr1:25883746 chr1:25883750 nonsynonymous SNV 0.975 2 25 hm5C_associated_SNPs_126088 0 0 1 0 1 LDLRAP1 chr1:25883758 5'GT 25883758 Upstream 9bp
chr1 113057667 113057667 1 + T C UCEC 113057664 + 113057644 113057684 41 TTCCGCCACCACCGCTGGAACTGTACCACCCTGGACCGGGA TTCCGCCACCACCGCTGGAACTGCACCACCCTGGACCGGGA < 41bp 0.565170373002628 0.772316793369918 0.17042902 0.15818349 prediction 0.41429284073458 Functional Gain - WNT2B ENSG00000134245 CDS Human protein_coding chr1:113057664 chr1:113057667 synonymous SNV . 0 24 hm5C_associated_SNPs_126091 0 0 0 0 1 WNT2B chr1:113057716 5'GT 113057716 Upstream 50bp
chr9 90344499 90344499 1 + T C UCEC 90344496 + 90344476 90344516 41 TACCTTTGAAAGGAAGAATCCTGTAAGTACAATCCCAAGTA TACCTTTGAAAGGAAGAATCCTGCAAGTACAATCCCAAGTA < 41bp 0.477946768652654 0.707142377623612 0.07024795 0.07996029 prediction 0.414284755247223 Functional Gain - CTSL ENSG00000135047 CDS Human protein_coding chr9:90344496 chr9:90344499 synonymous SNV . 0 24 hm5C_associated_SNPs_126095 0 0 1 0 1 CTSL chr9:90344488 3'AG 90344488 Downstream 12bp
chr2 11780446 11780446 1 + C T UCEC 11780445 + 11780425 11780465 41 TTGTGTGTCATCTGTCAGGACCGGAGCTCACTGCGCCAGAC TTGTGTGTCATCTGTCAGGACTGGAGCTCACTGCGCCAGAC < 41bp 0.466726481084213 0.707142031163013 0.8896687 0.59880024 prediction 0.414284062326027 Functional Gain - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11780445 chr2:11780446 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_126096 0 0 1 0 1 GREB1 chr2:11780417 3'AG 11780417 Downstream 30bp
chrX 54957386 54957386 1 + C T COAD 54957385 + 54957365 54957405 41 GTGCTGGCTTTGGTGGTGGACCGAGCACCAGTGCTGGCTTT GTGCTGGCTTTGGTGGTGGACTGAGCACCAGTGCTGGCTTT < 41bp 0.49862412455724 0.707134560266816 0.8833205 0.63516265 prediction 0.414269120533632 Functional Gain - TRO ENSG00000067445 CDS Human protein_coding chrX:54957385 chrX:54957386 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_126098 0 0 0 0 1 TRO chrX:54957464 5'GT 54957464 Upstream 79bp
chr12 58186813 58186813 1 + T C UCEC 58186811 + 58186791 58186831 41 TTTCTGGACTTCCAGCTGGGCCTGACAGAGAAGGCTCACTC TTTCTGGACTTCCAGCTGGGCCCGACAGAGAAGGCTCACTC < 41bp 0.409972113910047 0.707130038465255 0.24076274 0.19896796 prediction 0.414260076930511 Functional Gain - TSFM ENSG00000123297 CDS Human protein_coding chr12:58186811 chr12:58186813 synonymous SNV . 0 23 hm5C_associated_SNPs_126099 0 0 1 0 1 TSFM chr12:58186856 5'GT 58186856 Upstream 44bp
chr1 21889717 21889717 1 + C T COAD 21889716 + 21889696 21889736 41 AGCGCAGCCACTGAGCGTTCCCGGTGCAACACCACCCAGGG AGCGCAGCCACTGAGCGTTCCTGGTGCAACACCACCCAGGG < 41bp 0.461609975466064 0.707129885945311 0.8924475 0.9072542 prediction 0.414259771890622 Functional Gain - ALPL ENSG00000162551 CDS Human protein_coding chr1:21889716 chr1:21889717 nonsynonymous SNV 0.081 3 22 hm5C_associated_SNPs_126100 0 0 0 0 1 ALPL chr1:21889777 5'GT 21889777 Upstream 61bp
chr11 66743718 66743718 1 + C A COAD 66743717 + 66743697 66743737 41 CTCTGAGTCAGCCGGCCTCCCCGTAGCCCACACTGGGCACC CTCTGAGTCAGCCGGCCTCCCAGTAGCCCACACTGGGCACC < 41bp 0.440002705552008 0.707121662576421 0.10081208 0.23008311 prediction 0.414243325152843 Functional Gain - C11orf86 ENSG00000173237 CDS Human protein_coding chr11:66743717 chr11:66743718 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_126105 0 0 0 0 1 C11orf86 chr11:66743651 3'AG 66743651 Downstream 68bp
chr9 34517348 34517348 1 + A G rs544254178 34517345 + 34517325 34517365 41 TGCAACCAGCCTGTGGCGGCCAAAAAGAACAGGCTCACCCA TGCAACCAGCCTGTGGCGGCCAAGAAGAACAGGCTCACCCA < 41bp 0.596016578016721 0.80312843481829 0.15151832 0.46232468 prediction 0.414223713603137 Functional Gain - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34517345 chr9:34517348 synonymous SNV . 0 24 hm5C_associated_SNPs_126108 0 0 0 0 1 DNAI1 chr9:34517283 3'AG 34517283 Downstream 66bp
chr1 16380179 16380179 1 + C T LUSC 16380178 + 16380158 16380198 41 CTTCATGAACCACAGCATCACCACACTGGCCAAGGACATGC CTTCATGAACCACAGCATCACTACACTGGCCAAGGACATGC < 41bp 0.426901575900007 0.707109131027423 0.077812046 0.7643069 prediction 0.414218262054847 Functional Gain - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16380178 chr1:16380179 synonymous SNV . 0 22 hm5C_associated_SNPs_126111 0 0 0 0 1 CLCNKB chr1:16380134 3'AG 16380134 Downstream 46bp
chr20 362067 362067 1 + C A rs7260693 362066 + 362046 362086 41 CCCGCGGAGCGTGGGGTCGCCCGAGTTGGGCTGGGGAAGCC CCCGCGGAGCGTGGGGTCGCCAGAGTTGGGCTGGGGAAGCC < 41bp 0.59566225003797 0.802760768625215 0.85358346 0.90948594 prediction 0.414197037174491 Functional Gain - TRIB3 ENSG00000101255 UTR5 Human protein_coding chr20:362066 chr20:362067 . . 0 22 hm5C_associated_SNPs_126119 0 0 1 0 1 TRIB3 chr20:362144 5'GT 362144 Upstream 78bp
chr1 15813836 15813836 1 + T C rs61742388 15813834 + 15813814 15813854 41 CTGACGGCCGGTGGGAGGTGCATGGCATCGGCAGCCTCACG CTGACGGCCGGTGGGAGGTGCACGGCATCGGCAGCCTCACG < 41bp 0.44186038584927 0.707096548329504 0.8607744 0.81674933 prediction 0.414193096659007 Functional Gain - CELA2B ENSG00000215704 CDS Human protein_coding chr1:15813834 chr1:15813836 synonymous SNV . 0 23 hm5C_associated_SNPs_126121 0 0 0 0 2 CELA2B chr1:15813780 3'AG 15813780 Downstream 57bp
chr1 15813836 15813836 1 + T C rs61742388 15813834 + 15813814 15813854 41 CTGACGGCCGGTGGGAGGTGCATGGCATCGGCAGCCTCACG CTGACGGCCGGTGGGAGGTGCACGGCATCGGCAGCCTCACG < 41bp 0.44186038584927 0.707096548329504 0.8607744 0.81674933 prediction 0.414193096659007 Functional Gain - CELA2B ENSG00000215704 CDS Human protein_coding chr1:15813834 chr1:15813836 synonymous SNV . 0 23 hm5C_associated_SNPs_126121 0 0 0 0 2 CELA2B chr1:15813932 5'GT 15813932 Upstream 97bp
chr17 76094521 76094521 1 + T C GBM 76094518 + 76094498 76094538 41 CTATGGAAGGTGCCCAGAAACAGTACTGCACCCACGAGGCC CTATGGAAGGTGCCCAGAAACAGCACTGCACCCACGAGGCC < 41bp 0.552488664049089 0.759579901992186 0.5529041 0.31713936 prediction 0.414182475886194 Functional Gain - TNRC6C ENSG00000078687 CDS Human protein_coding chr17:76094518 chr17:76094521 synonymous SNV . 0 24 hm5C_associated_SNPs_126123 0 0 1 0 2 TNRC6C chr17:76094424 3'AG 76094424 Downstream 98bp
chr17 76094521 76094521 1 + T C GBM 76094518 + 76094498 76094538 41 CTATGGAAGGTGCCCAGAAACAGTACTGCACCCACGAGGCC CTATGGAAGGTGCCCAGAAACAGCACTGCACCCACGAGGCC < 41bp 0.552488664049089 0.759579901992186 0.5529041 0.31713936 prediction 0.414182475886194 Functional Gain - TNRC6C ENSG00000078687 CDS Human protein_coding chr17:76094518 chr17:76094521 synonymous SNV . 0 24 hm5C_associated_SNPs_126123 0 0 1 0 2 TNRC6C chr17:76094618 5'GT 76094618 Upstream 98bp
chr1 11772405 11772405 1 + C T UCEC 11772404 + 11772384 11772424 41 TTCTTATCCCCAGAGAAACACCGCGGTAAACTCTCCAGTGA TTCTTATCCCCAGAGAAACACTGCGGTAAACTCTCCAGTGA < 41bp 0.453101909592299 0.707087732858929 0.6326374 0.3523286 prediction 0.414175465717857 Functional Gain - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11772404 chr1:11772405 nonsynonymous SNV 0.493 2 22 hm5C_associated_SNPs_126126 0 0 0 0 2 DRAXIN chr1:11772397 3'AG 11772397 Downstream 9bp
chr1 11772405 11772405 1 + C T UCEC 11772404 + 11772384 11772424 41 TTCTTATCCCCAGAGAAACACCGCGGTAAACTCTCCAGTGA TTCTTATCCCCAGAGAAACACTGCGGTAAACTCTCCAGTGA < 41bp 0.453101909592299 0.707087732858929 0.6326374 0.3523286 prediction 0.414175465717857 Functional Gain - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11772404 chr1:11772405 nonsynonymous SNV 0.493 2 22 hm5C_associated_SNPs_126126 0 0 0 0 2 DRAXIN chr1:11772486 5'GT 11772486 Upstream 82bp
chr14 24648917 24648917 1 + T G BLCA 24648914 + 24648894 24648934 41 CCCAGAGCTCGAGCTGCTCTCACTGGAAGCAGTGCACAGGT CCCAGAGCTCGAGCTGCTCTCACGGGAAGCAGTGCACAGGT < 41bp 0.731868396070687 0.938950478976517 0.22809857 0.9089689 prediction 0.41416416581166 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24648914 chr14:24648917 nonsynonymous SNV 0.035 0 24 hm5C_associated_SNPs_126130 0 0 0 0 1 REC8 chr14:24648932 5'GT 24648932 Upstream 16bp
chr19 11660189 11660189 1 + C A BLCA 11660188 + 11660168 11660208 41 GGCATGACGGCCTATGGCACCCGGCGCCACCTCTACGACCC GGCATGACGGCCTATGGCACCAGGCGCCACCTCTACGACCC < 41bp 0.635916260916171 0.842982597186914 0.3492757 0.8268192 prediction 0.414132672541487 Functional Gain - CNN1 ENSG00000130176 CDS Human protein_coding chr19:11660188 chr19:11660189 synonymous SNV . 0 22 hm5C_associated_SNPs_126134 0 0 0 0 2 CNN1 chr19:11660138 3'AG 11660138 Downstream 52bp
chr19 11660189 11660189 1 + C A BLCA 11660188 + 11660168 11660208 41 GGCATGACGGCCTATGGCACCCGGCGCCACCTCTACGACCC GGCATGACGGCCTATGGCACCAGGCGCCACCTCTACGACCC < 41bp 0.635916260916171 0.842982597186914 0.3492757 0.8268192 prediction 0.414132672541487 Functional Gain - CNN1 ENSG00000130176 CDS Human protein_coding chr19:11660188 chr19:11660189 synonymous SNV . 0 22 hm5C_associated_SNPs_126134 0 0 0 0 2 CNN1 chr19:11660284 5'GT 11660284 Upstream 96bp
chr6 31107469 31107469 1 + C A LUSC 31107465 + 31107445 31107485 41 ATCCAAGGAATTCCATCTGGCAGCCACCCAGGATGACTGCA ATCCAAGGAATTCCATCTGGCAGCAACCCAGGATGACTGCA < 41bp 0.34015533200626 0.707064318492019 0.1577371 0.34978 prediction 0.414128636984038 Functional Gain - PSORS1C1 ENSG00000204540 CDS Human protein_coding chr6:31107465 chr6:31107469 synonymous SNV . 0 25 hm5C_associated_SNPs_126136 0 0 0 1 1 PSORS1C1 chr6:31107418 3'AG 31107418 Downstream 52bp
chr16 20792122 20792122 1 + C T COAD 20792121 + 20792101 20792141 41 CCAGTGGAACAAGTGGATATCCGAAAATGACTGCACACACC CCAGTGGAACAAGTGGATATCTGAAAATGACTGCACACACC < 41bp 0.62380372100687 0.83086401192474 0.29064882 0.11195615 prediction 0.414120581835742 Functional Gain - ACSM3 ENSG00000005187 CDS Human other chr16:20792121 chr16:20792122 nonsynonymous SNV 0.973 5 22 hm5C_associated_SNPs_126139 0 0 1 0 2 ACSM3;ERI2 chr16:20792036 3'AG 20792036 Downstream 87bp
chr16 20792122 20792122 1 + C T COAD 20792121 + 20792101 20792141 41 CCAGTGGAACAAGTGGATATCCGAAAATGACTGCACACACC CCAGTGGAACAAGTGGATATCTGAAAATGACTGCACACACC < 41bp 0.62380372100687 0.83086401192474 0.29064882 0.11195615 prediction 0.414120581835742 Functional Gain - ACSM3 ENSG00000005187 CDS Human protein_coding chr16:20792121 chr16:20792122 nonsynonymous SNV 0.973 5 22 hm5C_associated_SNPs_126139 0 0 1 0 2 ACSM3 chr16:20792179 5'GT 20792179 Upstream 58bp
chr3 37323488 37323488 1 + C T SKCM 37323487 + 37323467 37323507 41 TTTGCACAGAAGCTCCAGCTCCGGGTGCCCTCCGTGGAGTC TTTGCACAGAAGCTCCAGCTCTGGGTGCCCTCCGTGGAGTC < 41bp 0.60221850679662 0.80927604376458 0.9447218 0.8073811 prediction 0.41411507393592 Functional Gain - GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37323487 chr3:37323488 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_126142 0 0 1 0 1 GOLGA4 chr3:37323449 3'AG 37323449 Downstream 40bp
chr17 74076366 74076366 1 + C A UCEC 74076365 + 74076345 74076385 41 GGACTGGAGGGACCAGAGCCCCCAGGCTCGAGTAGACCAGG GGACTGGAGGGACCAGAGCCCACAGGCTCGAGTAGACCAGG < 41bp 0.428171780000773 0.707050923456541 0.5510486 0.76911664 prediction 0.414101846913083 Functional Gain - ZACN ENSG00000186919 CDS Human protein_coding chr17:74076365 chr17:74076366 synonymous SNV . 0 22 hm5C_associated_SNPs_126146 0 0 0 0 1 ZACN chr17:74076336 3'AG 74076336 Downstream 31bp
chr6 36922666 36922666 1 + C T HNSC 36922665 + 36922645 36922685 41 GTGGAGCTGCACAACCTCTACCGGGCCCAGGTATCCCCGAC GTGGAGCTGCACAACCTCTACTGGGCCCAGGTATCCCCGAC < 41bp 0.566086299612305 0.773136150140905 0.28755233 0.18783557 prediction 0.4140997010572 Functional Gain - PI16 ENSG00000164530 CDS Human protein_coding chr6:36922665 chr6:36922666 nonsynonymous SNV 0.903 4 22 hm5C_associated_SNPs_126147 0 0 0 0 1 PI16 chr6:36922707 5'GT 36922707 Upstream 42bp
chr10 13222465 13222465 1 + A G OV 13222462 + 13222442 13222482 41 GCGGCCTCGAGTATCCTCCACAGAAATGAACAAGAAAATGA GCGGCCTCGAGTATCCTCCACAGGAATGAACAAGAAAATGA < 41bp 0.471880543727395 0.707049841359293 0.18152821 0.09596938 prediction 0.414099682718587 Functional Gain - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13222462 chr10:13222465 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_126148 0 0 1 0 1 MCM10 chr10:13222442 3'AG 13222442 Downstream 24bp
chr1 1469360 1469360 1 + C T UCEC 1469359 + 1469339 1469379 41 ACCGAGGCCATGATGGACACCCGCGTGCAAGATGCTGTCCA ACCGAGGCCATGATGGACACCTGCGTGCAAGATGCTGTCCA < 41bp 0.474666151531372 0.707046022822681 0.2031607 0.11750758 prediction 0.414092045645362 Functional Gain - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1469359 chr1:1469360 nonsynonymous SNV 0.637 1 22 hm5C_associated_SNPs_126151 0 0 1 0 1 ATAD3A chr1:1469306 3'AG 1469306 Downstream 55bp
chr12 109281243 109281243 1 + C G COAD 109281239 + 109281219 109281259 41 CTTCCAGGGACTGGAGCCAACAGACCTTTGACTATCTCCTG CTTCCAGGGACTGGAGCCAACAGAGCTTTGACTATCTCCTG < 41bp 0.393033837731717 0.707044396781172 0.40450928 0.6961534 prediction 0.414088793562345 Functional Gain - DAO ENSG00000110887 CDS Human protein_coding chr12:109281239 chr12:109281243 nonsynonymous SNV 0.279 2 25 hm5C_associated_SNPs_126153 0 0 0 0 2 DAO chr12:109281226 3'AG 109281226 Downstream 18bp
chr12 109281243 109281243 1 + C G COAD 109281239 + 109281219 109281259 41 CTTCCAGGGACTGGAGCCAACAGACCTTTGACTATCTCCTG CTTCCAGGGACTGGAGCCAACAGAGCTTTGACTATCTCCTG < 41bp 0.393033837731717 0.707044396781172 0.40450928 0.6961534 prediction 0.414088793562345 Functional Gain - DAO ENSG00000110887 CDS Human protein_coding chr12:109281239 chr12:109281243 nonsynonymous SNV 0.279 2 25 hm5C_associated_SNPs_126153 0 0 0 0 2 DAO chr12:109281340 5'GT 109281340 Upstream 98bp
chr10 96602728 96602728 1 + C A LUSC 96602724 + 96602704 96602744 41 TACATCGACCTCATCCCCACCAGCCTGCCCCATGCAGTGAC TACATCGACCTCATCCCCACCAGCATGCCCCATGCAGTGAC < 41bp 0.27592168528658 0.707042043394543 0.09236947 0.1253461 prediction 0.414084086789086 Functional Gain - CYP2C19 ENSG00000165841 CDS Human protein_coding chr10:96602724 chr10:96602728 nonsynonymous SNV 0.009 1 25 hm5C_associated_SNPs_126155 0 0 0 0 1 CYP2C19 chr10:96602781 5'GT 96602781 Upstream 54bp
chr11 67378014 67378014 1 + C T SKCM 67378013 + 67377993 67378033 41 GGCAAGCAGGGCAAGCCCCGCCTGAAGCCCCCCTTCCCCGC GGCAAGCAGGGCAAGCCCCGCTTGAAGCCCCCCTTCCCCGC < 41bp 0.640967956656345 0.84800949732986 0.09009537 0.08997846 prediction 0.41408308134703 Functional Gain - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67378013 chr11:67378014 synonymous SNV . 0 22 hm5C_associated_SNPs_126157 0 0 1 0 1 NDUFV1 chr11:67378041 5'GT 67378041 Upstream 28bp
chr1 160314557 160314557 1 + T A LUSC 160314555 + 160314535 160314575 41 GAGAGGAAGATATATATCCCCTTAAATAAAACAGCTCCCTG GAGAGGAAGATATATATCCCCTAAAATAAAACAGCTCCCTG < 41bp 0.512326758960996 0.719367870130898 0.117504865 0.11826211 prediction 0.414082222339804 Functional Gain - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160314555 chr1:160314557 stopgain 1.000 1 23 hm5C_associated_SNPs_126158 0 0 1 0 1 NCSTN chr1:160314512 3'AG 160314512 Downstream 46bp
chr1 109637083 109637083 1 + T C UCEC 109637081 + 109637061 109637101 41 GCATGCTGCTGTGGCAATTGCTTGTGTTGTAATGGCCTTTT GCATGCTGCTGTGGCAATTGCTCGTGTTGTAATGGCCTTTT < 41bp 0.646772695966239 0.853809976865979 0.1332334 0.1943892 prediction 0.41407456179948 Functional Gain - TMEM167B ENSG00000215717 CDS Human protein_coding chr1:109637081 chr1:109637083 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_126161 0 0 1 0 1 TMEM167B chr1:109637039 3'AG 109637039 Downstream 45bp
chr11 114320583 114320583 1 + T C rs75726739 114320580 + 114320560 114320600 41 GCTTATAGGGCACTTGATGACATTAGTGAAAGCATCAAAGA GCTTATAGGGCACTTGATGACATCAGTGAAAGCATCAAAGA < 41bp 0.530918069461754 0.737952089049631 0.0930081 0.11407891 prediction 0.414068039175755 Functional Gain - REXO2 ENSG00000076043 CDS Human protein_coding chr11:114320580 chr11:114320583 synonymous SNV . 0 24 hm5C_associated_SNPs_126165 0 0 1 0 1 REXO2 chr11:114320568 3'AG 114320568 Downstream 16bp
chr1 156626822 156626822 1 + C A GBM 156626821 + 156626801 156626841 41 AGCTGGGAGGAGGCAGAGACCCAGTGCCGGATGTACGGCGC AGCTGGGAGGAGGCAGAGACCAAGTGCCGGATGTACGGCGC < 41bp 0.642748981983759 0.849777964871093 0.7939091 0.59022975 prediction 0.414057965774668 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156626821 chr1:156626822 nonsynonymous SNV 0.991 0 22 hm5C_associated_SNPs_126169 0 0 0 0 2 BCAN chr1:156626730 3'AG 156626730 Downstream 93bp
chr1 156626822 156626822 1 + C A GBM 156626821 + 156626801 156626841 41 AGCTGGGAGGAGGCAGAGACCCAGTGCCGGATGTACGGCGC AGCTGGGAGGAGGCAGAGACCAAGTGCCGGATGTACGGCGC < 41bp 0.642748981983759 0.849777964871093 0.7939091 0.59022975 prediction 0.414057965774668 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156626821 chr1:156626822 nonsynonymous SNV 0.991 0 22 hm5C_associated_SNPs_126169 0 0 0 0 2 BCAN chr1:156626888 5'GT 156626888 Upstream 67bp
chr1 150482172 150482172 1 + C T STAD 150482171 + 150482151 150482191 41 CCCCCCTCCCCACCCCTATCCCGAAGCCTCCCCATGGATCA CCCCCCTCCCCACCCCTATCCTGAAGCCTCCCCATGGATCA < 41bp 0.582911843343431 0.789935421430469 0.5065792 0.12471089 prediction 0.414047156174077 Functional Gain - ECM1 ENSG00000143369 CDS Human protein_coding chr1:150482171 chr1:150482172 stopgain 0.007 0 22 hm5C_associated_SNPs_126175 1 0 0 0 2 ECM1 chr1:150482137 3'AG 150482137 Downstream 36bp
chr1 150482172 150482172 1 + C T STAD 150482171 + 150482151 150482191 41 CCCCCCTCCCCACCCCTATCCCGAAGCCTCCCCATGGATCA CCCCCCTCCCCACCCCTATCCTGAAGCCTCCCCATGGATCA < 41bp 0.582911843343431 0.789935421430469 0.5065792 0.12471089 prediction 0.414047156174077 Functional Gain - ECM1 ENSG00000143369 CDS Human protein_coding chr1:150482171 chr1:150482172 stopgain 0.007 0 22 hm5C_associated_SNPs_126175 1 0 0 0 2 ECM1 chr1:150482238 5'GT 150482238 Upstream 67bp
chr6 17507928 17507928 1 + T C KIRP 17507925 + 17507905 17507945 41 AATGACGCTGCCACCTTTTACACTAACAGGGTCTTAAAGGA AATGACGCTGCCACCTTTTACACCAACAGGGTCTTAAAGGA < 41bp 0.47036996973721 0.707020377412657 0.20180795 0.19384989 prediction 0.414040754825314 Functional Gain - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17507925 chr6:17507928 synonymous SNV . 0 24 hm5C_associated_SNPs_126177 0 0 1 3 2 CAP2 chr6:17507872 3'AG 17507872 Downstream 57bp
chr6 17507928 17507928 1 + T C KIRP 17507925 + 17507905 17507945 41 AATGACGCTGCCACCTTTTACACTAACAGGGTCTTAAAGGA AATGACGCTGCCACCTTTTACACCAACAGGGTCTTAAAGGA < 41bp 0.47036996973721 0.707020377412657 0.20180795 0.19384989 prediction 0.414040754825314 Functional Gain - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17507925 chr6:17507928 synonymous SNV . 0 24 hm5C_associated_SNPs_126177 0 0 1 3 2 CAP2 chr6:17507957 5'GT 17507957 Upstream 30bp
chr3 32915400 32915400 1 + C T SKCM 32915399 + 32915379 32915419 41 GGCCACAGCTTCATCTACCTCCAGGAGGCACTGCAGGACTC GGCCACAGCTTCATCTACCTCTAGGAGGCACTGCAGGACTC < 41bp 0.630112344715656 0.837129643139943 0.8111218 0.8409462 prediction 0.414034596848574 Functional Gain - TRIM71 ENSG00000206557 CDS Human protein_coding chr3:32915399 chr3:32915400 stopgain 1.000 1 22 hm5C_associated_SNPs_126178 0 0 1 0 2 TRIM71 chr3:32915310 3'AG 32915310 Downstream 91bp
chr3 32915400 32915400 1 + C T SKCM 32915399 + 32915379 32915419 41 GGCCACAGCTTCATCTACCTCCAGGAGGCACTGCAGGACTC GGCCACAGCTTCATCTACCTCTAGGAGGCACTGCAGGACTC < 41bp 0.630112344715656 0.837129643139943 0.8111218 0.8409462 prediction 0.414034596848574 Functional Gain - TRIM71 ENSG00000206557 CDS Human protein_coding chr3:32915399 chr3:32915400 stopgain 1.000 1 22 hm5C_associated_SNPs_126178 0 0 1 0 2 TRIM71 chr3:32915477 5'GT 32915477 Upstream 78bp
chr22 38212624 38212624 1 + C G rs17856459 38212623 + 38212603 38212643 41 GTGGTCCCCAAGGGCAAGGCCCGGATCCGGGTACAGATCTC GTGGTCCCCAAGGGCAAGGCCGGGATCCGGGTACAGATCTC < 41bp 0.687327444662706 0.89433908199011 0.07691458 0.64952487 prediction 0.414023274654808 Functional Gain - GCAT ENSG00000100116 CDS Human protein_coding chr22:38212623 chr22:38212624 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_126182 0 0 0 0 1 GCAT chr22:38212574 3'AG 38212574 Downstream 51bp
chr10 76910306 76910306 1 + T A KIRC 76910302 + 76910282 76910322 41 AGGAAATGGCAGGTCCTAATCAACTCTGCATTCGCCGCTGG AGGAAATGGCAGGTCCTAATCAACACTGCATTCGCCGCTGG < 41bp 0.696650946575907 0.903662376638994 0.1806817 0.41382307 prediction 0.414022860126174 Functional Gain - SAMD8 ENSG00000156671 CDS Human protein_coding chr10:76910302 chr10:76910306 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_126183 0 0 1 0 1 SAMD8 chr10:76910272 3'AG 76910272 Downstream 35bp
chr20 6017775 6017775 1 + C T UCEC 6017774 + 6017754 6017794 41 TATAGTTACTATCATTATGGCCGGAAGACTGTTCAGGTGAT TATAGTTACTATCATTATGGCTGGAAGACTGTTCAGGTGAT < 41bp 0.466153053677605 0.707010234226627 0.24097964 0.22049263 prediction 0.414020468453253 Functional Gain - CRLS1 ENSG00000088766 CDS Human protein_coding chr20:6017774 chr20:6017775 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_126185 0 0 1 2 1 CRLS1 chr20:6017720 3'AG 6017720 Downstream 56bp
chr4 130023819 130023819 1 + C T SKCM 130023818 + 130023798 130023838 41 TTTTCCAGTGAAGCATGAGCCCGTATTTATCAGGCTGAATC TTTTCCAGTGAAGCATGAGCCTGTATTTATCAGGCTGAATC < 41bp 0.45752762806211 0.707007641061861 0.032269716 0.0406349 prediction 0.414015282123722 Functional Gain - C4orf33 ENSG00000151470 CDS Human protein_coding chr4:130023818 chr4:130023819 synonymous SNV . 0 22 hm5C_associated_SNPs_126187 0 0 1 0 1 C4orf33 chr4:130023757 3'AG 130023757 Downstream 63bp
chr2 102626041 102626041 1 + C T STAD 102626040 + 102626020 102626060 41 TCAGGGGCTGCCAGAAGCTGCCGGTTTCGTGGGAGGCATTA TCAGGGGCTGCCAGAAGCTGCTGGTTTCGTGGGAGGCATTA < 41bp 0.566333485674803 0.773340120853393 0.8827021 0.83896863 prediction 0.414013270357181 Functional Gain - IL1R2 ENSG00000115590 CDS Human protein_coding chr2:102626040 chr2:102626041 nonsynonymous SNV 0.008 0 22 hm5C_associated_SNPs_126188 0 0 0 0 1 IL1R2 chr2:102626024 3'AG 102626024 Downstream 18bp
chr4 154265824 154265824 1 + T C rs184851511 154265822 + 154265802 154265842 41 GTCGGCGCCAAAATCAAACGCGTCCTGGCCTGTCCCGCCCC GTCGGCGCCAAAATCAAACGCGCCCTGGCCTGTCCCGCCCC < 41bp 0.564275117471469 0.771271394987237 0.2717362 0.20666856 prediction 0.413992555031536 Functional Gain - MND1 ENSG00000121211 UTR5 Human protein_coding chr4:154265822 chr4:154265824 . . 0 23 hm5C_associated_SNPs_126196 0 0 0 0 1 MND1 chr4:154265892 5'GT 154265892 Upstream 69bp
chr12 31238022 31238022 1 + C T COAD 31238021 + 31238001 31238041 41 GGAGGAGGAGCTGGTCCTCGCCGAATACGAGAGTGATGAGG GGAGGAGGAGCTGGTCCTCGCTGAATACGAGAGTGATGAGG < 41bp 0.516473315308124 0.72346734824765 0.5034181 0.27198005 prediction 0.413988065879052 Functional Gain - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31238021 chr12:31238022 synonymous SNV . 0 22 hm5C_associated_SNPs_126198 0 0 1 0 1 DDX11 chr12:31238060 5'GT 31238060 Upstream 39bp
chr19 3208890 3208890 1 + T C rs312074 3208888 + 3208868 3208908 41 CCTCCACCCCGCAGACCAGGCGTCGTGTGTGTGTGGGAGAG CCTCCACCCCGCAGACCAGGCGCCGTGTGTGTGTGGGAGAG < 41bp 0.526981175260157 0.733973626731775 0.07611436 0.06763175 prediction 0.413984902943237 Functional Gain - NCLN ENSG00000125912 UTR3 Human protein_coding chr19:3208888 chr19:3208890 . . 0 23 hm5C_associated_SNPs_126199 0 0 1 0 1 NCLN chr19:3208974 5'GT 3208974 Upstream 85bp
chr16 57734101 57734101 1 + C T LUAD 57734100 + 57734080 57734120 41 GCCCACACTGATGCCCTACCCCGAGCTCTACAACTGGGACA GCCCACACTGATGCCCTACCCTGAGCTCTACAACTGGGACA < 41bp 0.465301122160202 0.706989556162793 0.20920214 0.13962093 prediction 0.413979112325586 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57734100 chr16:57734101 synonymous SNV . 0 22 hm5C_associated_SNPs_126200 0 0 0 0 2 DRC7 chr16:57734057 3'AG 57734057 Downstream 45bp
chr16 57734101 57734101 1 + C T LUAD 57734100 + 57734080 57734120 41 GCCCACACTGATGCCCTACCCCGAGCTCTACAACTGGGACA GCCCACACTGATGCCCTACCCTGAGCTCTACAACTGGGACA < 41bp 0.465301122160202 0.706989556162793 0.20920214 0.13962093 prediction 0.413979112325586 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57734100 chr16:57734101 synonymous SNV . 0 22 hm5C_associated_SNPs_126200 0 0 0 0 2 DRC7 chr16:57734182 5'GT 57734182 Upstream 82bp
chr3 38316964 38316964 1 + C T SKCM 38316963 + 38316943 38316983 41 GTCAATAGGCGGAAACTCTCCCCGGAGCTCATGAACCAGGT GTCAATAGGCGGAAACTCTCCTCGGAGCTCATGAACCAGGT < 41bp 0.619394160381757 0.826377119143818 0.4088564 0.5194985 prediction 0.413965917524123 Functional Gain - SLC22A13 ENSG00000172940 CDS Human protein_coding chr3:38316963 chr3:38316964 nonsynonymous SNV 0.026 0 22 hm5C_associated_SNPs_126204 0 0 0 0 1 SLC22A13 chr3:38316981 5'GT 38316981 Upstream 18bp
chr6 52052499 52052499 1 + C T STAD 52052498 + 52052478 52052518 41 TTCTGAGGACAAGAACTTCCCCCGGACTGTGATGGTCAACC TTCTGAGGACAAGAACTTCCCTCGGACTGTGATGGTCAACC < 41bp 0.609266400316775 0.816245993177209 0.08364543 0.09848493 prediction 0.413959185720869 Functional Gain - IL17A ENSG00000112115 CDS Human protein_coding chr6:52052498 chr6:52052499 synonymous SNV . 0 22 hm5C_associated_SNPs_126205 0 0 0 0 1 IL17A chr6:52052401 3'AG 52052401 Downstream 99bp
chr1 151497219 151497219 1 + A G STAD 151497216 + 151497196 151497236 41 AACAGCGAGTAGAGGAGCAGCTGAGGCTGCGGGAGCGGGAG AACAGCGAGTAGAGGAGCAGCTGGGGCTGCGGGAGCGGGAG < 41bp 0.592589208041066 0.799567726697554 0.8044729 0.65689296 prediction 0.413957037312977 Functional Gain - CGN ENSG00000143375 CDS Human protein_coding chr1:151497216 chr1:151497219 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_126206 0 0 0 0 1 CGN chr1:151497150 3'AG 151497150 Downstream 70bp
chr3 97506926 97506926 1 + T C rs148745414 97506923 + 97506903 97506943 41 CTGTAAAAGTGTCTCAGTTGCTGTGTTTAGAGAACATCAAA CTGTAAAAGTGTCTCAGTTGCTGCGTTTAGAGAACATCAAA < 41bp 0.498556804856666 0.706976925877777 0.037173122 0.037248522 prediction 0.413953851755555 Functional Gain - ARL6 ENSG00000113966 CDS Human protein_coding chr3:97506923 chr3:97506926 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_126209 0 0 1 0 2 ARL6 chr3:97506834 3'AG 97506834 Downstream 93bp
chr3 97506926 97506926 1 + T C rs148745414 97506923 + 97506903 97506943 41 CTGTAAAAGTGTCTCAGTTGCTGTGTTTAGAGAACATCAAA CTGTAAAAGTGTCTCAGTTGCTGCGTTTAGAGAACATCAAA < 41bp 0.498556804856666 0.706976925877777 0.037173122 0.037248522 prediction 0.413953851755555 Functional Gain - ARL6 ENSG00000113966 CDS Human protein_coding chr3:97506923 chr3:97506926 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_126209 0 0 1 0 2 ARL6 chr3:97506963 5'GT 97506963 Upstream 38bp
chr16 2256159 2256159 1 + C G BLCA 2256155 + 2256135 2256175 41 ACTGCAGGCTACGACCACACCGTGCGCTTCTGGCAGGCCCA ACTGCAGGCTACGACCACACCGTGGGCTTCTGGCAGGCCCA < 41bp 0.414499457939925 0.706973454646234 0.0724847 0.32482988 prediction 0.413946909292469 Functional Gain - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2256155 chr16:2256159 nonsynonymous SNV 0.991 4 25 hm5C_associated_SNPs_126213 0 0 1 0 2 MLST8 chr16:2256062 3'AG 2256062 Downstream 98bp
chr16 2256159 2256159 1 + C G BLCA 2256155 + 2256135 2256175 41 ACTGCAGGCTACGACCACACCGTGCGCTTCTGGCAGGCCCA ACTGCAGGCTACGACCACACCGTGGGCTTCTGGCAGGCCCA < 41bp 0.414499457939925 0.706973454646234 0.0724847 0.32482988 prediction 0.413946909292469 Functional Gain - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2256155 chr16:2256159 nonsynonymous SNV 0.991 4 25 hm5C_associated_SNPs_126213 0 0 1 0 2 MLST8 chr16:2256215 5'GT 2256215 Upstream 57bp
chr9 125760962 125760962 1 + C T UCEC 125760961 + 125760941 125760981 41 TTTCTCCTGGAGACAAAAGTCCGCGTTTGCTCACCTAATGA TTTCTCCTGGAGACAAAAGTCTGCGTTTGCTCACCTAATGA < 41bp 0.455420389320792 0.706972801605341 0.4089421 0.34007347 prediction 0.413945603210683 Functional Gain - RABGAP1 ENSG00000011454 CDS Human protein_coding chr9:125760961 chr9:125760962 nonsynonymous SNV 0.874 4 22 hm5C_associated_SNPs_126214 0 0 1 0 2 RABGAP1 chr9:125760876 3'AG 125760876 Downstream 87bp
chr9 125760962 125760962 1 + C T UCEC 125760961 + 125760941 125760981 41 TTTCTCCTGGAGACAAAAGTCCGCGTTTGCTCACCTAATGA TTTCTCCTGGAGACAAAAGTCTGCGTTTGCTCACCTAATGA < 41bp 0.455420389320792 0.706972801605341 0.4089421 0.34007347 prediction 0.413945603210683 Functional Gain - RABGAP1 ENSG00000011454 CDS Human protein_coding chr9:125760961 chr9:125760962 nonsynonymous SNV 0.874 4 22 hm5C_associated_SNPs_126214 0 0 1 0 2 RABGAP1 chr9:125761045 5'GT 125761045 Upstream 84bp
chr9 131233599 131233599 1 + A G LUSC 131233596 + 131233576 131233616 41 CCCCTGCTCAGGTCAAGATGCAAAAAGGTGAGCGCCAGATG CCCCTGCTCAGGTCAAGATGCAAGAAGGTGAGCGCCAGATG < 41bp 0.566390662248047 0.773332474761291 0.12149942 0.31997728 prediction 0.413883625026488 Functional Gain - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131233596 chr9:131233599 nonsynonymous SNV 0.976 1 24 hm5C_associated_SNPs_126219 0 0 1 0 1 ODF2 chr9:131233587 3'AG 131233587 Downstream 13bp
chr2 182399045 182399045 1 + C T SKCM 182399044 + 182399024 182399064 41 AAATAAGAGCAACAGGTTTTCCAGAGCCAAATCCAAGAGTA AAATAAGAGCAACAGGTTTTCTAGAGCCAAATCCAAGAGTA < 41bp 0.624935039538265 0.831865553692177 0.85090494 0.37245908 prediction 0.413861028307824 Functional Gain - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182399044 chr2:182399045 nonsynonymous SNV 0.987 0 22 hm5C_associated_SNPs_126221 0 0 0 0 2 ITGA4 chr2:182398999 3'AG 182398999 Downstream 47bp
chr2 182399045 182399045 1 + C T SKCM 182399044 + 182399024 182399064 41 AAATAAGAGCAACAGGTTTTCCAGAGCCAAATCCAAGAGTA AAATAAGAGCAACAGGTTTTCTAGAGCCAAATCCAAGAGTA < 41bp 0.624935039538265 0.831865553692177 0.85090494 0.37245908 prediction 0.413861028307824 Functional Gain - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182399044 chr2:182399045 nonsynonymous SNV 0.987 0 22 hm5C_associated_SNPs_126221 0 0 0 0 2 ITGA4 chr2:182399097 5'GT 182399097 Upstream 53bp
chr1 150280549 150280549 1 + C T UCEC 150280548 + 150280528 150280568 41 TATTATGAGAAGCCATGCCGCCGGCGACAGAGGGAAAGCTA TATTATGAGAAGCCATGCCGCTGGCGACAGAGGGAAAGCTA < 41bp 0.564994782942998 0.771914479960706 0.52613807 0.26148114 prediction 0.413839394035417 Functional Gain - MRPS21 ENSG00000187145 CDS Human other chr1:150280548 chr1:150280549 nonsynonymous SNV 0.618 1 22 hm5C_associated_SNPs_126224 0 0 1 0 1 MRPS21 chr1:150280482 3'AG 150280482 Downstream 68bp
chr22 24921717 24921717 1 + C T STAD 24921716 + 24921696 24921736 41 GATGTACGCACGGGAGCTCGCCGAAGCTGTCAAGTCCAACT GATGTACGCACGGGAGCTCGCTGAAGCTGTCAAGTCCAACT < 41bp 0.600497907562022 0.807413008770494 0.20047504 0.11436239 prediction 0.413830202416945 Functional Gain - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24921716 chr22:24921717 synonymous SNV . 0 22 hm5C_associated_SNPs_126227 0 0 0 0 1 UPB1 chr22:24921679 3'AG 24921679 Downstream 39bp
chr16 58537758 58537758 1 + C T SKCM 58537757 + 58537737 58537777 41 TGTAGTGATCCGGGGCTCCCCCAAGGGGAACCGCCCAGCCA TGTAGTGATCCGGGGCTCCCCTAAGGGGAACCGCCCAGCCA < 41bp 0.623432161595745 0.830343887906532 0.7421365 0.42823884 prediction 0.413823452621573 Functional Gain - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58537757 chr16:58537758 synonymous SNV . 0 22 hm5C_associated_SNPs_126230 0 0 1 0 2 NDRG4 chr16:58537702 3'AG 58537702 Downstream 57bp
chr16 58537758 58537758 1 + C T SKCM 58537757 + 58537737 58537777 41 TGTAGTGATCCGGGGCTCCCCCAAGGGGAACCGCCCAGCCA TGTAGTGATCCGGGGCTCCCCTAAGGGGAACCGCCCAGCCA < 41bp 0.623432161595745 0.830343887906532 0.7421365 0.42823884 prediction 0.413823452621573 Functional Gain - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58537757 chr16:58537758 synonymous SNV . 0 22 hm5C_associated_SNPs_126230 0 0 1 0 2 NDRG4 chr16:58537807 5'GT 58537807 Upstream 50bp
chr2 238990707 238990707 1 + C G rs142210384 238990704 + 238990684 238990724 41 AGCCTGTCCCTGAAATCAGTCAGCGCATTAAAGCCCTGAAC AGCCTGTCCCTGAAATCAGTCAGGGCATTAAAGCCCTGAAC < 41bp 0.495014164193232 0.706910550501023 0.39700097 0.8959841 prediction 0.413821101002046 Functional Gain - SCLY ENSG00000132330 CDS Human protein_coding chr2:238990704 chr2:238990707 nonsynonymous SNV 0.015 1 24 hm5C_associated_SNPs_126231 0 0 1 0 1 SCLY chr2:238990686 3'AG 238990686 Downstream 22bp
chr2 45169972 45169972 1 + C T STAD 45169971 + 45169951 45169991 41 ACGCGAACTGGCGCAGGCCACCGGCCTCACTCCCACACAAG ACGCGAACTGGCGCAGGCCACTGGCCTCACTCCCACACAAG < 41bp 0.473975231123665 0.706906376225607 0.55627066 0.5749969 prediction 0.413812752451214 Functional Gain - SIX3 ENSG00000138083 CDS Human protein_coding chr2:45169971 chr2:45169972 synonymous SNV . 0 22 hm5C_associated_SNPs_126233 0 0 0 0 1 SIX3 chr2:45170049 5'GT 45170049 Upstream 78bp
chr18 66564663 66564663 1 + C T LUSC 66564662 + 66564642 66564682 41 ATTGATCTGCAAGAAAAAAACCAGGTATGGGTGCTCCTTGG ATTGATCTGCAAGAAAAAAACTAGGTATGGGTGCTCCTTGG < 41bp 0.562664339656898 0.769569240486016 0.6500839 0.35961875 prediction 0.413809801658237 Functional Gain - CCDC102B ENSG00000150636 CDS Human protein_coding chr18:66564662 chr18:66564663 stopgain 0.097 0 22 hm5C_associated_SNPs_126234 0 0 0 0 1 CCDC102B chr18:66564665 5'GT 66564665 Upstream 3bp
chr20 2542549 2542549 1 + C T rs377484662 2542548 + 2542528 2542568 41 CTCTGGTGGGGAGTCCCTGTCCGAGGAGGAACTGGCCCAGA CTCTGGTGGGGAGTCCCTGTCTGAGGAGGAACTGGCCCAGA < 41bp 0.61648050932398 0.823384859556844 0.8480673 0.3677863 prediction 0.413808700465728 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2542548 chr20:2542549 synonymous SNV . 0 22 hm5C_associated_SNPs_126235 0 0 0 0 1 TMC2 chr20:2542504 3'AG 2542504 Downstream 46bp
chrX 24483604 24483604 1 + C T STAD 24483603 + 24483583 24483623 41 TCCGGTGGCTGCTGAAGCAGCCGGTGCCCAAGCAGATCGAG TCCGGTGGCTGCTGAAGCAGCTGGTGCCCAAGCAGATCGAG < 41bp 0.5253174105913 0.732219659983517 0.76667845 0.71207356 prediction 0.413804498784434 Functional Gain - PDK3 ENSG00000067992 CDS Human protein_coding chrX:24483603 chrX:24483604 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_126236 0 0 1 0 1 PDK3 chrX:24483678 5'GT 24483678 Upstream 75bp
chr2 69015013 69015013 1 + C A UCEC 69015012 + 69014992 69015032 41 ATGGGACAGGACTCCTATGTCCTCATGGCCAGCTCTCAGGC ATGGGACAGGACTCCTATGTCATCATGGCCAGCTCTCAGGC < 41bp 0.445019251077502 0.706900010997036 0.056945622 0.20013738 prediction 0.413800021994071 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69015012 chr2:69015013 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_126237 0 0 0 1 2 ARHGAP25 chr2:69014972 3'AG 69014972 Downstream 42bp
chr2 69015013 69015013 1 + C A UCEC 69015012 + 69014992 69015032 41 ATGGGACAGGACTCCTATGTCCTCATGGCCAGCTCTCAGGC ATGGGACAGGACTCCTATGTCATCATGGCCAGCTCTCAGGC < 41bp 0.445019251077502 0.706900010997036 0.056945622 0.20013738 prediction 0.413800021994071 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69015012 chr2:69015013 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_126237 0 0 0 1 2 ARHGAP25 chr2:69015088 5'GT 69015088 Upstream 76bp
chr1 45243769 45243769 1 + T C UCEC 45243767 + 45243747 45243787 41 AATGCCAAAATCAGCAGTCTCCTGGAGGAGCAGTTCCAGCA AATGCCAAAATCAGCAGTCTCCCGGAGGAGCAGTTCCAGCA < 41bp 0.434538919202005 0.70689936119116 0.4579322 0.8282938 prediction 0.413798722382319 Functional Gain - RPS8 ENSG00000142937 CDS Human protein_coding chr1:45243767 chr1:45243769 nonsynonymous SNV 0.959 4 23 hm5C_associated_SNPs_126238 0 0 1 0 2 RPS8 chr1:45243672 3'AG 45243672 Downstream 98bp
chr1 45243769 45243769 1 + T C UCEC 45243767 + 45243747 45243787 41 AATGCCAAAATCAGCAGTCTCCTGGAGGAGCAGTTCCAGCA AATGCCAAAATCAGCAGTCTCCCGGAGGAGCAGTTCCAGCA < 41bp 0.434538919202005 0.70689936119116 0.4579322 0.8282938 prediction 0.413798722382319 Functional Gain - RPS8 ENSG00000142937 CDS Human protein_coding chr1:45243767 chr1:45243769 nonsynonymous SNV 0.959 4 23 hm5C_associated_SNPs_126238 0 0 1 0 2 RPS8 chr1:45243801 5'GT 45243801 Upstream 33bp
chr16 77246517 77246517 1 + C A rs62049594 77246516 + 77246496 77246536 41 GGGGAGCAGGTCCGGAGCGCCCCCGAGGTCGGGGCCGGCGA GGGGAGCAGGTCCGGAGCGCCACCGAGGTCGGGGCCGGCGA < 41bp 0.620712904604566 0.827612100186868 0.22182629 0.257047 prediction 0.413798391164603 Functional Gain - SYCE1L ENSG00000205078 CDS Human protein_coding chr16:77246516 chr16:77246517 nonsynonymous SNV 0.005 0 22 hm5C_associated_SNPs_126239 0 0 0 0 2 SYCE1L chr16:77246471 3'AG 77246471 Downstream 47bp
chr16 77246517 77246517 1 + C A rs62049594 77246516 + 77246496 77246536 41 GGGGAGCAGGTCCGGAGCGCCCCCGAGGTCGGGGCCGGCGA GGGGAGCAGGTCCGGAGCGCCACCGAGGTCGGGGCCGGCGA < 41bp 0.620712904604566 0.827612100186868 0.22182629 0.257047 prediction 0.413798391164603 Functional Gain - SYCE1L ENSG00000205078 CDS Human protein_coding chr16:77246516 chr16:77246517 nonsynonymous SNV 0.005 0 22 hm5C_associated_SNPs_126239 0 0 0 0 2 SYCE1L chr16:77246543 5'GT 77246543 Upstream 27bp
chr8 124132320 124132320 1 + T A LUSC 124132316 + 124132296 124132336 41 ACCTTATCTGCATTAGCTCACTGGTCTGTCATTTTTAGTGA ACCTTATCTGCATTAGCTCACTGGACTGTCATTTTTAGTGA < 41bp 0.380574659184849 0.70689389814068 0.026053637 0.054948002 prediction 0.41378779628136 Functional Gain - TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124132316 chr8:124132320 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_126241 0 0 0 0 1 TBC1D31 chr8:124132295 3'AG 124132295 Downstream 26bp
chr19 614010 614010 1 + C T SKCM 614009 + 613989 614029 41 GTGGCCATCGACCGCCTGGACCGCATCGGTGAGCGGGCCGG GTGGCCATCGACCGCCTGGACTGCATCGGTGAGCGGGCCGG < 41bp 0.59366130870021 0.800539304729385 0.0444144 0.13068977 prediction 0.41375599205835 Functional Gain - HCN2 ENSG00000099822 CDS Human protein_coding chr19:614009 chr19:614010 nonsynonymous SNV 0.966 3 22 hm5C_associated_SNPs_126245 0 0 0 0 1 HCN2 chr19:614016 5'GT 614016 Upstream 7bp
chr12 25232686 25232686 1 + T C rs35794789 25232683 + 25232663 25232703 41 TACAAGATCAGCTTCTCCCACGATAGAGGCCCAAGGTAAAA TACAAGATCAGCTTCTCCCACGACAGAGGCCCAAGGTAAAA < 41bp 0.489021477594438 0.706876773012647 0.08598116 0.112528235 prediction 0.413753546025295 Functional Gain - LRMP ENSG00000118308 CDS Human protein_coding chr12:25232683 chr12:25232686 stoploss 0.031 0 24 hm5C_associated_SNPs_126246 0 0 0 0 2 LRMP chr12:25232590 3'AG 25232590 Downstream 97bp
chr12 25232686 25232686 1 + T C rs35794789 25232683 + 25232663 25232703 41 TACAAGATCAGCTTCTCCCACGATAGAGGCCCAAGGTAAAA TACAAGATCAGCTTCTCCCACGACAGAGGCCCAAGGTAAAA < 41bp 0.489021477594438 0.706876773012647 0.08598116 0.112528235 prediction 0.413753546025295 Functional Gain - LRMP ENSG00000118308 CDS Human protein_coding chr12:25232683 chr12:25232686 stoploss 0.031 0 24 hm5C_associated_SNPs_126246 0 0 0 0 2 LRMP chr12:25232697 5'GT 25232697 Upstream 12bp
chr7 139653189 139653189 1 + C A rs543782716 139653185 + 139653165 139653205 41 AGATGGTTCCCCTCATCAGCCAAGCCTGCGAACTTCTCCTG AGATGGTTCCCCTCATCAGCCAAGACTGCGAACTTCTCCTG < 41bp 0.29324938753819 0.706873338899879 0.115906954 0.09558171 prediction 0.413746677799757 Functional Gain - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139653185 chr7:139653189 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_126252 0 0 0 0 2 TBXAS1 chr7:139653167 3'AG 139653167 Downstream 23bp
chr7 139653189 139653189 1 + C A rs543782716 139653185 + 139653165 139653205 41 AGATGGTTCCCCTCATCAGCCAAGCCTGCGAACTTCTCCTG AGATGGTTCCCCTCATCAGCCAAGACTGCGAACTTCTCCTG < 41bp 0.29324938753819 0.706873338899879 0.115906954 0.09558171 prediction 0.413746677799757 Functional Gain - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139653185 chr7:139653189 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_126252 0 0 0 0 2 TBXAS1 chr7:139653255 5'GT 139653255 Upstream 67bp
chr17 72939708 72939708 1 + C A GBM 72939707 + 72939687 72939727 41 GGCATTTCCCCCAGGTGTGGCCTGATGCTGACCCTGGCCAC GGCATTTCCCCCAGGTGTGGCATGATGCTGACCCTGGCCAC < 41bp 0.438772919406642 0.706865700472217 0.32808453 0.3410195 prediction 0.413731400944434 Functional Gain - OTOP3 ENSG00000182938 CDS Human protein_coding chr17:72939707 chr17:72939708 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_126256 0 0 0 0 1 OTOP3 chr17:72939701 3'AG 72939701 Downstream 8bp
chr15 81585193 81585193 1 + C T UCEC 81585192 + 81585172 81585212 41 AGCCCACCCCTCCCAGAGAGCCGGGACAGCCACCCGCCGCT AGCCCACCCCTCCCAGAGAGCTGGGACAGCCACCCGCCGCT < 41bp 0.556483404025997 0.763342274918407 0.911687 0.5864239 prediction 0.41371774178482 Functional Gain - IL16 ENSG00000172349 CDS Human protein_coding chr15:81585192 chr15:81585193 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_126259 0 0 0 0 1 IL16 chr15:81585240 5'GT 81585240 Upstream 48bp
chr2 95539717 95539717 1 + C A rs141896538 95539716 + 95539696 95539736 41 CCACCCCGCCCCAGACTGAACCGGGAGCACAAGGAGACCTG CCACCCCGCCCCAGACTGAACAGGGAGCACAAGGAGACCTG < 41bp 0.642885838769553 0.849743325546853 0.92326295 0.9098861 prediction 0.413714973554599 Functional Gain - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95539716 chr2:95539717 synonymous SNV . 0 22 hm5C_associated_SNPs_126261 0 0 0 0 1 TEKT4 chr2:95539710 3'AG 95539710 Downstream 8bp
chr16 72107846 72107846 1 + T C LUSC 72107843 + 72107823 72107863 41 GGGGACGACAGCTTTTTGCACTGTACTCAGGCAATGATGTC GGGGACGACAGCTTTTTGCACTGCACTCAGGCAATGATGTC < 41bp 0.550969611592201 0.757825196362786 0.21640149 0.10021907 prediction 0.413711169541171 Functional Gain - HPR ENSG00000261701 CDS Human protein_coding chr16:72107843 chr16:72107846 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_126263 0 0 1 0 2 HPR chr16:72107791 3'AG 72107791 Downstream 56bp
chr16 72107846 72107846 1 + T C LUSC 72107843 + 72107823 72107863 41 GGGGACGACAGCTTTTTGCACTGTACTCAGGCAATGATGTC GGGGACGACAGCTTTTTGCACTGCACTCAGGCAATGATGTC < 41bp 0.550969611592201 0.757825196362786 0.21640149 0.10021907 prediction 0.413711169541171 Functional Gain - HPR ENSG00000261701 CDS Human protein_coding chr16:72107843 chr16:72107846 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_126263 0 0 1 0 2 HPR chr16:72107876 5'GT 72107876 Upstream 31bp
chr1 156622654 156622654 1 + C T COAD 156622653 + 156622633 156622673 41 CTGCCCACTGACAGCGCCAGCCGAGGTGGAGTGGCCGTGGT CTGCCCACTGACAGCGCCAGCTGAGGTGGAGTGGCCGTGGT < 41bp 0.458399380473249 0.706853333603505 0.8592166 0.7554321 prediction 0.413706667207011 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156622653 chr1:156622654 stopgain 0.998 0 22 hm5C_associated_SNPs_126265 0 0 0 0 1 BCAN chr1:156622684 5'GT 156622684 Upstream 31bp
chr14 51027013 51027013 1 + T C rs146613929 51027010 + 51026990 51027030 41 AAGAACCGCAGGGACAGAAACAGTTGGGGTGAGTAGCAAAT AAGAACCGCAGGGACAGAAACAGCTGGGGTGAGTAGCAAAT < 41bp 0.535248328309514 0.742096485519481 0.17673188 0.3506809 prediction 0.413696314419934 Functional Gain - ATL1 ENSG00000198513 CDS Human protein_coding chr14:51027010 chr14:51027013 synonymous SNV . 0 24 hm5C_associated_SNPs_126269 0 0 0 0 1 ATL1 chr14:51027017 5'GT 51027017 Upstream 5bp
chr22 21213632 21213632 1 + C G rs144160898 21213628 + 21213608 21213648 41 CGAGAAGGTTGGGGTCGCCTCTTCCGAGGTGAGCCTGGGGC CGAGAAGGTTGGGGTCGCCTCTTCGGAGGTGAGCCTGGGGC < 41bp 0.4215981658239 0.706848061719713 0.09244743 0.20749417 prediction 0.413696123439427 Functional Gain - SNAP29 ENSG00000099940 CDS Human protein_coding chr22:21213628 chr22:21213632 synonymous SNV . 0 25 hm5C_associated_SNPs_126270 1 0 1 0 1 SNAP29 chr22:21213635 5'GT 21213635 Upstream 4bp
chr7 128446872 128446872 1 + T A LUAD 128446868 + 128446848 128446888 41 GCCATGAGGCAGAGCTGCAGCACCTCAGGGATACGGTGGCC GCCATGAGGCAGAGCTGCAGCACCACAGGGATACGGTGGCC < 41bp 0.358943997942837 0.706847573384636 0.1931541 0.110770345 prediction 0.413695146769273 Functional Gain - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128446868 chr7:128446872 nonsynonymous SNV 0.027 3 25 hm5C_associated_SNPs_126271 0 0 0 0 1 CCDC136 chr7:128446912 5'GT 128446912 Upstream 41bp
chr19 758679 758679 1 + C T SKCM 758678 + 758658 758698 41 CAGAGGTCTTCTCCCCAACGCCAGATGAGAACTCTGACCAG CAGAGGTCTTCTCCCCAACGCTAGATGAGAACTCTGACCAG < 41bp 0.586805748337287 0.793649840164778 0.9146103 0.3775104 prediction 0.413688183654983 Functional Gain - MISP ENSG00000099812 CDS Human protein_coding chr19:758678 chr19:758679 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_126272 0 0 0 0 1 MISP chr19:758726 5'GT 758726 Upstream 48bp
chr12 250351 250351 1 - G A LUSC 250352 - 250332 250372 41 GGAGGAGGAAATGGGCCACACCGATGGGGGTGTCCGGGATG GGAGGAGGAAATGGGCCACACTGATGGGGGTGTCCGGGATG < 41bp 0.466561760649434 0.706843613765201 0.13911831 0.22057426 prediction 0.413687227530402 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:250352 chr12:250351 nonsynonymous SNV 0.890 2 22 hm5C_associated_SNPs_126274 0 0 0 0 1 IQSEC3 chr12:250410 3'AG 250410 Downstream 60bp
chr19 58574893 58574893 1 + C T BLCA 58574892 + 58574872 58574912 41 GGCGGTGGAGTCTAGACTTCCCCAAGGCGTGTACCCAGGTG GGCGGTGGAGTCTAGACTTCCTCAAGGCGTGTACCCAGGTG < 41bp 0.624357751149961 0.831200625845558 0.20669621 0.7409766 prediction 0.413685749391194 Functional Gain - ZNF135 ENSG00000176293 CDS Human protein_coding chr19:58574892 chr19:58574893 synonymous SNV . 0 22 hm5C_associated_SNPs_126276 0 0 0 0 2 ZNF135 chr19:58574814 3'AG 58574814 Downstream 80bp
chr19 58574893 58574893 1 + C T BLCA 58574892 + 58574872 58574912 41 GGCGGTGGAGTCTAGACTTCCCCAAGGCGTGTACCCAGGTG GGCGGTGGAGTCTAGACTTCCTCAAGGCGTGTACCCAGGTG < 41bp 0.624357751149961 0.831200625845558 0.20669621 0.7409766 prediction 0.413685749391194 Functional Gain - ZNF135 ENSG00000176293 CDS Human protein_coding chr19:58574892 chr19:58574893 synonymous SNV . 0 22 hm5C_associated_SNPs_126276 0 0 0 0 2 ZNF135 chr19:58574909 5'GT 58574909 Upstream 17bp
chr1 26357960 26357960 1 + C A LUSC 26357956 + 26357936 26357976 41 GTCTCATTCCCCCAGGCTCCCGCCCTGAGGGCAGATTCAGC GTCTCATTCCCCCAGGCTCCCGCCATGAGGGCAGATTCAGC < 41bp 0.283652672631221 0.706840107833304 0.062606424 0.36653736 prediction 0.413680215666608 Functional Gain - EXTL1 ENSG00000158008 CDS Human protein_coding chr1:26357956 chr1:26357960 nonsynonymous SNV 0.985 5 25 hm5C_associated_SNPs_126277 0 0 0 0 2 EXTL1 chr1:26357951 3'AG 26357951 Downstream 10bp
chr1 26357960 26357960 1 + C A LUSC 26357956 + 26357936 26357976 41 GTCTCATTCCCCCAGGCTCCCGCCCTGAGGGCAGATTCAGC GTCTCATTCCCCCAGGCTCCCGCCATGAGGGCAGATTCAGC < 41bp 0.283652672631221 0.706840107833304 0.062606424 0.36653736 prediction 0.413680215666608 Functional Gain - EXTL1 ENSG00000158008 CDS Human protein_coding chr1:26357956 chr1:26357960 nonsynonymous SNV 0.985 5 25 hm5C_associated_SNPs_126277 0 0 0 0 2 EXTL1 chr1:26358057 5'GT 26358057 Upstream 98bp
chr16 30762550 30762550 1 + C T SKCM 30762549 + 30762529 30762569 41 GCTGGAGGAGGTGCGGGAAGCCACACGGCGAGAGACACACA GCTGGAGGAGGTGCGGGAAGCTACACGGCGAGAGACACACA < 41bp 0.641573564108954 0.848408604705295 0.8880594 0.9024957 prediction 0.413670081192681 Functional Gain - PHKG2 ENSG00000156873 CDS Human protein_coding chr16:30762549 chr16:30762550 synonymous SNV . 0 22 hm5C_associated_SNPs_126278 0 0 1 0 1 PHKG2 chr16:30762602 5'GT 30762602 Upstream 53bp
chr1 156617858 156617858 1 + C T UCEC 156617857 + 156617837 156617877 41 GGAACTATGGTGTGGTGGACCCGGATGACCTCTATGATGTG GGAACTATGGTGTGGTGGACCTGGATGACCTCTATGATGTG < 41bp 0.615170856830255 0.822005101306736 0.76876974 0.3165245 prediction 0.413668488952962 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156617857 chr1:156617858 nonsynonymous SNV 0.058 2 22 hm5C_associated_SNPs_126279 0 0 0 0 2 BCAN chr1:156617775 3'AG 156617775 Downstream 84bp
chr1 156617858 156617858 1 + C T UCEC 156617857 + 156617837 156617877 41 GGAACTATGGTGTGGTGGACCCGGATGACCTCTATGATGTG GGAACTATGGTGTGGTGGACCTGGATGACCTCTATGATGTG < 41bp 0.615170856830255 0.822005101306736 0.76876974 0.3165245 prediction 0.413668488952962 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156617857 chr1:156617858 nonsynonymous SNV 0.058 2 22 hm5C_associated_SNPs_126279 0 0 0 0 2 BCAN chr1:156617902 5'GT 156617902 Upstream 45bp
chr9 4561477 4561477 1 + C T rs79429045 4561476 + 4561456 4561496 41 TGCACTGGATTCCAACGTATCCGGAAAAATTGGTCTGCGCG TGCACTGGATTCCAACGTATCTGGAAAAATTGGTCTGCGCG < 41bp 0.621773157621045 0.828604913520018 0.8618126 0.5109058 prediction 0.413663511797946 Functional Gain - SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4561476 chr9:4561477 synonymous SNV . 0 22 hm5C_associated_SNPs_126280 0 0 0 0 2 SLC1A1 chr9:4561449 3'AG 4561449 Downstream 29bp
chr9 4561477 4561477 1 + C T rs79429045 4561476 + 4561456 4561496 41 TGCACTGGATTCCAACGTATCCGGAAAAATTGGTCTGCGCG TGCACTGGATTCCAACGTATCTGGAAAAATTGGTCTGCGCG < 41bp 0.621773157621045 0.828604913520018 0.8618126 0.5109058 prediction 0.413663511797946 Functional Gain - SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4561476 chr9:4561477 synonymous SNV . 0 22 hm5C_associated_SNPs_126280 0 0 0 0 2 SLC1A1 chr9:4561541 5'GT 4561541 Upstream 65bp
chr1 1469341 1469341 1 + C G rs141883472 1469340 + 1469320 1469360 41 CTCCGAGGACGGGGTCCTGACCGAGGCCATGATGGACACCC CTCCGAGGACGGGGTCCTGACGGAGGCCATGATGGACACCC < 41bp 0.688443430583892 0.895272030670023 0.88745356 0.8957466 prediction 0.413657200172261 Functional Gain - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1469340 chr1:1469341 synonymous SNV . 0 22 hm5C_associated_SNPs_126281 0 0 0 0 1 ATAD3A chr1:1469306 3'AG 1469306 Downstream 36bp
chr9 133271376 133271376 1 + T A rs534880527 133271372 + 133271352 133271392 41 CCAGCTGCAGGCCCTGAGCACGGCTGACAGCGGCGACTACA CCAGCTGCAGGCCCTGAGCACGGCAGACAGCGGCGACTACA < 41bp 0.664710353919948 0.871530915142364 0.8563893 0.9030688 prediction 0.413641122444831 Functional Gain - HMCN2 ENSG00000148357;ENSG00000215428 intergenic Human other chr9:133271372 chr9:133271376 . . 0 25 hm5C_associated_SNPs_126289 0 0 0 0 2 HMCN2 chr9:133271311 3'AG 133271311 Downstream 66bp
chr9 133271376 133271376 1 + T A rs534880527 133271372 + 133271352 133271392 41 CCAGCTGCAGGCCCTGAGCACGGCTGACAGCGGCGACTACA CCAGCTGCAGGCCCTGAGCACGGCAGACAGCGGCGACTACA < 41bp 0.664710353919948 0.871530915142364 0.8563893 0.9030688 prediction 0.413641122444831 Functional Gain - HMCN2 ENSG00000148357;ENSG00000215428 intergenic Human other chr9:133271372 chr9:133271376 . . 0 25 hm5C_associated_SNPs_126289 0 0 0 0 2 HMCN2 chr9:133271452 5'GT 133271452 Upstream 77bp
chr9 136513099 136513099 1 + C T SKCM 136513098 + 136513078 136513118 41 CCACGGGAGACCGCCTTCATCCTCACTGGCTACTGCACGGA CCACGGGAGACCGCCTTCATCTTCACTGGCTACTGCACGGA < 41bp 0.433865574338977 0.706820377777396 0.044296294 0.23578012 prediction 0.413640755554792 Functional Gain - DBH ENSG00000123454 CDS Human protein_coding chr9:136513098 chr9:136513099 nonsynonymous SNV 0.348 4 22 hm5C_associated_SNPs_126290 0 0 0 0 1 DBH chr9:136513134 5'GT 136513134 Upstream 36bp
chr1 156703898 156703898 1 + C T UVM 156703897 + 156703877 156703917 41 TTCTGCTTCCACTGGAGAACCCGTGTCAGGGCAGGGCCCGC TTCTGCTTCCACTGGAGAACCTGTGTCAGGGCAGGGCCCGC < 41bp 0.469618025770674 0.706816612631171 0.08615863 0.060954005 prediction 0.413633225262342 Functional Gain - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156703897 chr1:156703898 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_126292 0 0 0 0 1 RRNAD1 chr1:156703801 3'AG 156703801 Downstream 98bp
chr19 54965698 54965698 1 + C T HNSC 54965697 + 54965677 54965717 41 GCCCCCTCAGCCCTCAAATCCCCCACATGGGGCTCACACGC GCCCCCTCAGCCCTCAAATCCTCCACATGGGGCTCACACGC < 41bp 0.431704720498667 0.706813027780606 0.06672943 0.9514854 prediction 0.413626055561212 Functional Gain - LENG8 ENSG00000167615 CDS Human protein_coding chr19:54965697 chr19:54965698 synonymous SNV . 0 22 hm5C_associated_SNPs_126293 0 0 1 0 1 LENG8 chr19:54965609 3'AG 54965609 Downstream 90bp
chr3 93699285 93699285 1 + C G rs572660435 93699284 + 93699264 93699304 41 CGGGATGTTCAGTCTGATGGCCAGTTGCTGCGGCTGGTTCA CGGGATGTTCAGTCTGATGGCGAGTTGCTGCGGCTGGTTCA < 41bp 0.617982034975895 0.824792929528535 0.31791434 0.54994637 prediction 0.413621789105279 Functional Gain - ARL13B ENSG00000169379 CDS Human protein_coding chr3:93699284 chr3:93699285 synonymous SNV . 0 22 hm5C_associated_SNPs_126294 0 0 1 0 1 ARL13B chr3:93699326 5'GT 93699326 Upstream 42bp
chr8 91937833 91937833 1 + A G LIHC 91937830 + 91937810 91937850 41 AACGATCAAGCCGCCGAGTCCAGAGACACAACAGCTTCTCC AACGATCAAGCCGCCGAGTCCAGGGACACAACAGCTTCTCC < 41bp 0.599687938724381 0.806497961552109 0.36992168 0.5110297 prediction 0.413620045655456 Functional Gain - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91937830 chr8:91937833 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_126295 0 0 0 0 2 NECAB1 chr8:91937763 3'AG 91937763 Downstream 71bp
chr8 91937833 91937833 1 + A G LIHC 91937830 + 91937810 91937850 41 AACGATCAAGCCGCCGAGTCCAGAGACACAACAGCTTCTCC AACGATCAAGCCGCCGAGTCCAGGGACACAACAGCTTCTCC < 41bp 0.599687938724381 0.806497961552109 0.36992168 0.5110297 prediction 0.413620045655456 Functional Gain - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91937830 chr8:91937833 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_126295 0 0 0 0 2 NECAB1 chr8:91937884 5'GT 91937884 Upstream 52bp
chr9 134098239 134098239 1 + A G UCEC 134098236 + 134098216 134098256 41 CCAGCTCGTCGTTTGGAGAGCAGAAACCCACTGGCACTTTC CCAGCTCGTCGTTTGGAGAGCAGGAACCCACTGGCACTTTC < 41bp 0.480168244118629 0.706808289356794 0.27186605 0.4259854 prediction 0.413616578713588 Functional Gain - NUP214 ENSG00000126883 CDS Human protein_coding chr9:134098236 chr9:134098239 nonsynonymous SNV 0.903 4 24 hm5C_associated_SNPs_126296 0 0 1 0 2 NUP214 chr9:134098165 3'AG 134098165 Downstream 75bp
chr9 134098239 134098239 1 + A G UCEC 134098236 + 134098216 134098256 41 CCAGCTCGTCGTTTGGAGAGCAGAAACCCACTGGCACTTTC CCAGCTCGTCGTTTGGAGAGCAGGAACCCACTGGCACTTTC < 41bp 0.480168244118629 0.706808289356794 0.27186605 0.4259854 prediction 0.413616578713588 Functional Gain - NUP214 ENSG00000126883 CDS Human protein_coding chr9:134098236 chr9:134098239 nonsynonymous SNV 0.903 4 24 hm5C_associated_SNPs_126296 0 0 1 0 2 NUP214 chr9:134098317 5'GT 134098317 Upstream 79bp
chr1 100606500 100606500 1 + T C LUSC 100606498 + 100606478 100606518 41 CGGGAAAGGGAAAATTATCTCATTGGGTTGATATTGCCTTA CGGGAAAGGGAAAATTATCTCACTGGGTTGATATTGCCTTA < 41bp 0.429299482636627 0.70680680652406 0.24528557 0.25058725 prediction 0.41361361304812 Functional Gain - TRMT13 ENSG00000122435 CDS Human protein_coding chr1:100606498 chr1:100606500 synonymous SNV . 0 23 hm5C_associated_SNPs_126297 0 0 1 0 2 TRMT13 chr1:100606408 3'AG 100606408 Downstream 93bp
chr1 100606500 100606500 1 + T C LUSC 100606498 + 100606478 100606518 41 CGGGAAAGGGAAAATTATCTCATTGGGTTGATATTGCCTTA CGGGAAAGGGAAAATTATCTCACTGGGTTGATATTGCCTTA < 41bp 0.429299482636627 0.70680680652406 0.24528557 0.25058725 prediction 0.41361361304812 Functional Gain - TRMT13 ENSG00000122435 CDS Human protein_coding chr1:100606498 chr1:100606500 synonymous SNV . 0 23 hm5C_associated_SNPs_126297 0 0 1 0 2 TRMT13 chr1:100606575 5'GT 100606575 Upstream 76bp
chr12 8610514 8610514 1 + C A LUSC 8610513 + 8610493 8610533 41 GAGAAAAGAGGCTGGTTGTCCCTGAGACTCTGGTCTGTGGC GAGAAAAGAGGCTGGTTGTCCATGAGACTCTGGTCTGTGGC < 41bp 0.627568412257712 0.834370290858587 0.1927858 0.21670923 prediction 0.41360375720175 Functional Gain - CLEC6A ENSG00000205846 CDS Human protein_coding chr12:8610513 chr12:8610514 nonsynonymous SNV 0.007 2 22 hm5C_associated_SNPs_126298 0 0 0 0 2 CLEC6A chr12:8610494 3'AG 8610494 Downstream 21bp
chr12 8610514 8610514 1 + C A LUSC 8610513 + 8610493 8610533 41 GAGAAAAGAGGCTGGTTGTCCCTGAGACTCTGGTCTGTGGC GAGAAAAGAGGCTGGTTGTCCATGAGACTCTGGTCTGTGGC < 41bp 0.627568412257712 0.834370290858587 0.1927858 0.21670923 prediction 0.41360375720175 Functional Gain - CLEC6A ENSG00000205846 CDS Human protein_coding chr12:8610513 chr12:8610514 nonsynonymous SNV 0.007 2 22 hm5C_associated_SNPs_126298 0 0 0 0 2 CLEC6A chr12:8610583 5'GT 8610583 Upstream 70bp
chrX 56310823 56310823 1 + C T COAD 56310822 + 56310802 56310842 41 GATGAGCTCACTCGCCATTTCCGCAAGCACACAGGCATCAA GATGAGCTCACTCGCCATTTCTGCAAGCACACAGGCATCAA < 41bp 0.62948644368955 0.836287887311562 0.06417352 0.45085606 prediction 0.413602887244023 Functional Gain - KLF8 ENSG00000102349 CDS Human protein_coding chrX:56310822 chrX:56310823 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_126299 0 0 0 0 1 KLF8 chrX:56310746 3'AG 56310746 Downstream 78bp
chr1 152975729 152975729 1 + C T LUAD 152975728 + 152975708 152975748 41 AGCCAGGCTGTACCAAGGTCCCTGAGCCAGGTTGTACCAAG AGCCAGGCTGTACCAAGGTCCTTGAGCCAGGTTGTACCAAG < 41bp 0.583020091083672 0.789821530196073 0.21565723 0.25557977 prediction 0.413602878224803 Functional Gain - SPRR3 ENSG00000163209 CDS Human protein_coding chr1:152975728 chr1:152975729 nonsynonymous SNV 0.042 3 22 hm5C_associated_SNPs_126300 0 0 0 0 1 SPRR3 chr1:152975701 3'AG 152975701 Downstream 29bp
chr16 10851880 10851880 1 + C T LUAD 10851879 + 10851859 10851899 41 GAGCAGTGATCATCACCACTCCCCAGGTGAGCGAGCTGCCA GAGCAGTGATCATCACCACTCTCCAGGTGAGCGAGCTGCCA < 41bp 0.651803118063323 0.858600519534822 0.37612396 0.9288957 prediction 0.413594802942997 Functional Gain - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10851879 chr16:10851880 nonsynonymous SNV 0.547 4 22 hm5C_associated_SNPs_126302 0 0 1 0 1 NUBP1 chr16:10851884 5'GT 10851884 Upstream 5bp
chr3 141006210 141006210 1 + C T LUAD 141006209 + 141006189 141006229 41 TAGTCACATGTCAAAAGGATCCGGAGCCTCTTTCGAAAGCC TAGTCACATGTCAAAAGGATCTGGAGCCTCTTTCGAAAGCC < 41bp 0.625060438928581 0.831854335372826 0.12634891 0.18877795 prediction 0.413587792888491 Functional Gain - PXYLP1 ENSG00000155893 CDS Human protein_coding chr3:141006209 chr3:141006210 synonymous SNV . 0 22 hm5C_associated_SNPs_126304 0 0 1 0 2 PXYLP1 chr3:141006156 3'AG 141006156 Downstream 55bp
chr3 141006210 141006210 1 + C T LUAD 141006209 + 141006189 141006229 41 TAGTCACATGTCAAAAGGATCCGGAGCCTCTTTCGAAAGCC TAGTCACATGTCAAAAGGATCTGGAGCCTCTTTCGAAAGCC < 41bp 0.625060438928581 0.831854335372826 0.12634891 0.18877795 prediction 0.413587792888491 Functional Gain - PXYLP1 ENSG00000155893 CDS Human protein_coding chr3:141006209 chr3:141006210 synonymous SNV . 0 22 hm5C_associated_SNPs_126304 0 0 1 0 2 PXYLP1 chr3:141006295 5'GT 141006295 Upstream 86bp
chr12 123889509 123889509 1 + C T OV 123889508 + 123889488 123889528 41 GGTGACTTTGTGGTGGAATACCACGGGGACCTCATCGAGAT GGTGACTTTGTGGTGGAATACTACGGGGACCTCATCGAGAT < 41bp 0.641000081962497 0.84778214627556 0.266259 0.2578686 prediction 0.413564128626125 Functional Gain - KMT5A ENSG00000183955 CDS Human protein_coding chr12:123889508 chr12:123889509 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_126310 0 0 1 0 1 KMT5A chr12:123889431 3'AG 123889431 Downstream 79bp
chr5 172410879 172410879 1 + C G THCA 172410878 + 172410858 172410898 41 GCGACCATGGCGTATCACGGCCTCACTGTGCCTCTCATTGT GCGACCATGGCGTATCACGGCGTCACTGTGCCTCTCATTGT < 41bp 0.394718226360453 0.706781755460537 0.06439406 0.18326962 prediction 0.413563510921074 Functional Gain - ATP6V0E1 ENSG00000113732 CDS Human protein_coding chr5:172410878 chr5:172410879 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_126311 0 0 1 0 1 ATP6V0E1 chr5:172410967 5'GT 172410967 Upstream 89bp
chr6 7576572 7576572 1 + T C LUAD 7576570 + 7576550 7576590 41 TCAAGCAATTGAGGAATTATCGTGATAACTATCAGGCTTTC TCAAGCAATTGAGGAATTATCGCGATAACTATCAGGCTTTC < 41bp 0.661964457944931 0.868741533296984 0.8815808 0.90766716 prediction 0.413554150704105 Functional Gain - DSP ENSG00000096696 CDS Human protein_coding chr6:7576570 chr6:7576572 synonymous SNV . 0 23 hm5C_associated_SNPs_126312 0 0 1 0 1 DSP chr6:7576527 3'AG 7576527 Downstream 46bp
chr9 404984 404984 1 + T G STAD 404981 + 404961 405001 41 GGCTAGAGTTCCTGAGAATCCTCTGTAGCCATGAGCATTAC GGCTAGAGTTCCTGAGAATCCTCGGTAGCCATGAGCATTAC < 41bp 0.345456699639206 0.706776846191283 0.039749086 0.065280944 prediction 0.413553692382565 Functional Gain - DOCK8 ENSG00000107099 CDS Human protein_coding chr9:404981 chr9:404984 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_126313 0 0 1 0 2 DOCK8 chr9:404918 3'AG 404918 Downstream 67bp
chr9 404984 404984 1 + T G STAD 404981 + 404961 405001 41 GGCTAGAGTTCCTGAGAATCCTCTGTAGCCATGAGCATTAC GGCTAGAGTTCCTGAGAATCCTCGGTAGCCATGAGCATTAC < 41bp 0.345456699639206 0.706776846191283 0.039749086 0.065280944 prediction 0.413553692382565 Functional Gain - DOCK8 ENSG00000107099 CDS Human protein_coding chr9:404981 chr9:404984 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_126313 0 0 1 0 2 DOCK8 chr9:405073 5'GT 405073 Upstream 90bp
chr2 192550393 192550393 1 + C T SKCM 192550392 + 192550372 192550412 41 CATGCTGGCAGAAGCAATGGCCGGGGACTTATAAATCCACA CATGCTGGCAGAAGCAATGGCTGGGGACTTATAAATCCACA < 41bp 0.564512568588814 0.771287891792394 0.1541121 0.0475007 prediction 0.41355064640716 Functional Gain - NABP1 ENSG00000173559 CDS Human protein_coding chr2:192550392 chr2:192550393 nonsynonymous SNV 0.927 1 22 hm5C_associated_SNPs_126314 0 0 1 0 1 NABP1 chr2:192550325 3'AG 192550325 Downstream 69bp
chr7 86415657 86415657 1 + C G LUAD 86415653 + 86415633 86415673 41 CGCCAAACTCAGTGATAAGTCGCGCTATGATTACTTTGCCA CGCCAAACTCAGTGATAAGTCGCGGTATGATTACTTTGCCA < 41bp 0.669349561358126 0.876122775918084 0.24516368 0.3733281 prediction 0.413546429119915 Functional Gain - GRM3 ENSG00000198822 CDS Human protein_coding chr7:86415653 chr7:86415657 synonymous SNV . 0 25 hm5C_associated_SNPs_126317 0 0 0 0 1 GRM3 chr7:86415577 3'AG 86415577 Downstream 81bp
chr4 110740179 110740179 1 + A G UCEC 110740176 + 110740156 110740196 41 GTATTTTTCAGTTAAGTTGTCAGAAAACATGAAGGCTTCAT GTATTTTTCAGTTAAGTTGTCAGGAAACATGAAGGCTTCAT < 41bp 0.489681791415035 0.706767499852482 0.24596831 0.39149642 prediction 0.413534999704964 Functional Gain - GAR1 ENSG00000109534 CDS Human protein_coding chr4:110740176 chr4:110740179 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_126322 0 0 1 0 2 GAR1 chr4:110740157 3'AG 110740157 Downstream 23bp
chr4 110740179 110740179 1 + A G UCEC 110740176 + 110740156 110740196 41 GTATTTTTCAGTTAAGTTGTCAGAAAACATGAAGGCTTCAT GTATTTTTCAGTTAAGTTGTCAGGAAACATGAAGGCTTCAT < 41bp 0.489681791415035 0.706767499852482 0.24596831 0.39149642 prediction 0.413534999704964 Functional Gain - GAR1 ENSG00000109534 CDS Human protein_coding chr4:110740176 chr4:110740179 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_126322 0 0 1 0 2 GAR1 chr4:110740216 5'GT 110740216 Upstream 38bp
chr8 76471133 76471133 1 + C G LUAD 76471132 + 76471112 76471152 41 CAATGATCGGCAGTATGACTCCCGGGGGAGGTTTGGAGAGT CAATGATCGGCAGTATGACTCGCGGGGGAGGTTTGGAGAGT < 41bp 0.691990839590639 0.898757604869634 0.47569367 0.9007545 prediction 0.413533530557989 Functional Gain - HNF4G ENSG00000164749 CDS Human protein_coding chr8:76471132 chr8:76471133 synonymous SNV . 0 22 hm5C_associated_SNPs_126323 0 0 0 0 1 HNF4G chr8:76471036 3'AG 76471036 Downstream 98bp
chr11 95523848 95523848 1 + T G rs201769882 95523846 + 95523826 95523866 41 CCCCCGAAGTGCGGAGACCCCCTGGGCAGGCTGAAAGATGG CCCCCGAAGTGCGGAGACCCCCGGGGCAGGCTGAAAGATGG < 41bp 0.674006224026386 0.880769600056515 0.07338986 0.89809144 prediction 0.413526752060259 Functional Gain - CEP57 ENSG00000166037 UTR5 Human protein_coding chr11:95523846 chr11:95523848 . . 0 23 hm5C_associated_SNPs_126325 0 0 1 0 1 CEP57 chr11:95523907 5'GT 95523907 Upstream 60bp
chr11 60468455 60468455 1 + C T BLCA 60468454 + 60468434 60468474 41 CCCTGTATCCAAACAGCCAGCCGCAAGTCCACCTAGTTCCT CCCTGTATCCAAACAGCCAGCTGCAAGTCCACCTAGTTCCT < 41bp 0.445372962918272 0.706754306094444 0.06679395 0.09748775 prediction 0.413508612188889 Functional Gain - MS4A8 ENSG00000166959 CDS Human protein_coding chr11:60468454 chr11:60468455 nonsynonymous SNV 0.033 1 22 hm5C_associated_SNPs_126328 0 0 0 0 1 MS4A8 chr11:60468552 5'GT 60468552 Upstream 98bp
chr14 62233751 62233751 1 + A G LIHC 62233748 + 62233728 62233768 41 CCCAACTGTGTCAACCAAAACAAAAGGTAATACTTAGTGAG CCCAACTGTGTCAACCAAAACAAGAGGTAATACTTAGTGAG < 41bp 0.567768783904786 0.774522925596112 0.7168143 0.9314909 prediction 0.413508283382652 Functional Gain - SNAPC1 ENSG00000023608 CDS Human protein_coding chr14:62233748 chr14:62233751 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_126329 0 0 0 0 1 SNAPC1 chr14:62233753 5'GT 62233753 Upstream 3bp
chr18 2740798 2740798 1 + A G rs115632137 2740795 + 2740775 2740815 41 GCTGGGGTTGGACTTGATAGCTCAAATTTGAAAACAACCTT GCTGGGGTTGGACTTGATAGCTCGAATTTGAAAACAACCTT < 41bp 0.541887283546493 0.748630043230918 0.18839756 0.15345433 prediction 0.41348551936885 Functional Gain - SMCHD1 ENSG00000101596 CDS Human protein_coding chr18:2740795 chr18:2740798 synonymous SNV . 0 24 hm5C_associated_SNPs_126333 0 0 1 0 2 SMCHD1 chr18:2740701 3'AG 2740701 Downstream 98bp
chr18 2740798 2740798 1 + A G rs115632137 2740795 + 2740775 2740815 41 GCTGGGGTTGGACTTGATAGCTCAAATTTGAAAACAACCTT GCTGGGGTTGGACTTGATAGCTCGAATTTGAAAACAACCTT < 41bp 0.541887283546493 0.748630043230918 0.18839756 0.15345433 prediction 0.41348551936885 Functional Gain - SMCHD1 ENSG00000101596 CDS Human protein_coding chr18:2740795 chr18:2740798 synonymous SNV . 0 24 hm5C_associated_SNPs_126333 0 0 1 0 2 SMCHD1 chr18:2740819 5'GT 2740819 Upstream 22bp
chr17 4623752 4623752 1 + C T SKCM 4623751 + 4623731 4623771 41 CCCCACGACCACATCCCCCTCCCCAGACCCCAGTCAGGTGA CCCCACGACCACATCCCCCTCTCCAGACCCCAGTCAGGTGA < 41bp 0.659843495549748 0.866583714267182 0.070124894 0.9574077 prediction 0.413480437434869 Functional Gain - ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4623751 chr17:4623752 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_126334 0 0 1 0 2 ARRB2 chr17:4623688 3'AG 4623688 Downstream 65bp
chr17 4623752 4623752 1 + C T SKCM 4623751 + 4623731 4623771 41 CCCCACGACCACATCCCCCTCCCCAGACCCCAGTCAGGTGA CCCCACGACCACATCCCCCTCTCCAGACCCCAGTCAGGTGA < 41bp 0.659843495549748 0.866583714267182 0.070124894 0.9574077 prediction 0.413480437434869 Functional Gain - ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4623751 chr17:4623752 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_126334 0 0 1 0 2 ARRB2 chr17:4623767 5'GT 4623767 Upstream 16bp
chr8 22140656 22140656 1 + C T rs149393632 22140655 + 22140635 22140675 41 TGTACCTTCAGCACACCGTCCCGGGGTCCCCCGCAGCTGTC TGTACCTTCAGCACACCGTCCTGGGGTCCCCCGCAGCTGTC < 41bp 0.607377235891673 0.814116360677539 0.92844296 0.58535856 prediction 0.413478249571733 Functional Gain - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22140655 chr8:22140656 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_126335 0 0 0 0 1 PIWIL2 chr8:22140753 5'GT 22140753 Upstream 98bp
chr9 127089635 127089635 1 + T C LAML 127089633 + 127089613 127089653 41 GCAGACATCAAGCCTGCCAACGTGTTCATCACAGCCACGGG GCAGACATCAAGCCTGCCAACGCGTTCATCACAGCCACGGG < 41bp 0.432067428257172 0.706728570443892 0.13285679 0.17857337 prediction 0.413457140887784 Functional Gain - NEK6 ENSG00000119408 CDS Human protein_coding chr9:127089633 chr9:127089635 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_126340 0 0 1 0 2 NEK6 chr9:127089617 3'AG 127089617 Downstream 19bp
chr9 127089635 127089635 1 + T C LAML 127089633 + 127089613 127089653 41 GCAGACATCAAGCCTGCCAACGTGTTCATCACAGCCACGGG GCAGACATCAAGCCTGCCAACGCGTTCATCACAGCCACGGG < 41bp 0.432067428257172 0.706728570443892 0.13285679 0.17857337 prediction 0.413457140887784 Functional Gain - NEK6 ENSG00000119408 CDS Human protein_coding chr9:127089633 chr9:127089635 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_126340 0 0 1 0 2 NEK6 chr9:127089724 5'GT 127089724 Upstream 90bp
chr10 127530325 127530325 1 - T C rs3208565 127530328 - 127530308 127530348 41 GTAGATGAAGTGCTAACAATCGCAGCCATGGTAACAGGTAT GTAGATGAAGTGCTAACAATCGCGGCCATGGTAACAGGTAT < 41bp 0.589378936559538 0.796107205251884 0.74263704 0.92246896 prediction 0.413456537384692 Functional Gain - DHX32 ENSG00000089876 CDS Human protein_coding chr10:127530328 chr10:127530325 synonymous SNV . 0 24 hm5C_associated_SNPs_126341 0 0 0 0 1 DHX32 chr10:127530312 5'GT 127530312 Upstream 14bp
chr18 34415329 34415329 1 + T C HNSC 34415326 + 34415306 34415346 41 CTTAAAAGGCACAGGAGATTCAGTAGATGAACAGGTTAGTA CTTAAAAGGCACAGGAGATTCAGCAGATGAACAGGTTAGTA < 41bp 0.536006739311759 0.742723618844299 0.4539535 0.910205 prediction 0.413433759065079 Functional Gain - KIAA1328 ENSG00000150477 CDS Human protein_coding chr18:34415326 chr18:34415329 nonsynonymous SNV 0.937 0 24 hm5C_associated_SNPs_126344 0 0 1 0 1 KIAA1328 chr18:34415339 5'GT 34415339 Upstream 11bp
chr19 7977267 7977267 1 + C T GBM 7977266 + 7977246 7977286 41 TCATGGCGAAGACTGAGTCACCGCGGACTAGCGGCGTCCTG TCATGGCGAAGACTGAGTCACTGCGGACTAGCGGCGTCCTG < 41bp 0.465120024497901 0.70671637599925 0.36408055 0.35376713 prediction 0.413432751998501 Functional Gain - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7977266 chr19:7977267 nonsynonymous SNV 0.432 2 22 hm5C_associated_SNPs_126345 0 0 1 0 1 MAP2K7 chr19:7977182 3'AG 7977182 Downstream 86bp
chr7 150269236 150269236 1 + C T SKCM 150269235 + 150269215 150269255 41 AGGGCCTGGAAGGCAAGAGCCCAGAAATTCCCAATTGAGAA AGGGCCTGGAAGGCAAGAGCCTAGAAATTCCCAATTGAGAA < 41bp 0.596814230197114 0.803522939509392 0.14552784 0.2343938 prediction 0.413417418624555 Functional Gain - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150269235 chr7:150269236 synonymous SNV . 0 22 hm5C_associated_SNPs_126347 0 0 0 0 1 GIMAP4 chr7:150269217 3'AG 150269217 Downstream 20bp
chr2 28627205 28627205 1 + C T UCEC 28627204 + 28627184 28627224 41 ACCATTGGCACCACCGTGGGCCGCAGGAGGAGAGATGAGCA ACCATTGGCACCACCGTGGGCTGCAGGAGGAGAGATGAGCA < 41bp 0.444923635578002 0.706699749800305 0.678188 0.6487727 prediction 0.413399499600611 Functional Gain - FOSL2 ENSG00000075426 CDS Human protein_coding chr2:28627204 chr2:28627205 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_126350 0 0 1 0 1 FOSL2 chr2:28627225 5'GT 28627225 Upstream 21bp
chr9 131004517 131004517 1 + C T BRCA 131004516 + 131004496 131004536 41 CCCATCACCCTCCAGGTCATCCGCAAGGGCTGGCTGACTAT CCCATCACCCTCCAGGTCATCTGCAAGGGCTGGCTGACTAT < 41bp 0.43716966516866 0.70669905420084 0.026596248 0.38743556 prediction 0.41339810840168 Functional Gain - DNM1 ENSG00000106976 CDS Human protein_coding chr9:131004516 chr9:131004517 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_126351 0 0 1 0 1 DNM1 chr9:131004511 3'AG 131004511 Downstream 7bp
chr16 28900193 28900193 1 + C T UCEC 28900192 + 28900172 28900212 41 CATTGTAAGAAGCTTGCCCTCCGTAGAGACCCTGGGCTGCA CATTGTAAGAAGCTTGCCCTCTGTAGAGACCCTGGGCTGCA < 41bp 0.439192554819141 0.706689924748081 0.13654235 0.1743885 prediction 0.413379849496163 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28900192 chr16:28900193 synonymous SNV . 0 22 hm5C_associated_SNPs_126356 0 0 0 0 1 ATP2A1 chr16:28900274 5'GT 28900274 Upstream 82bp
chr16 68260340 68260340 1 + A G UCEC 68260337 + 68260317 68260357 41 GCAGGCTCCCCTCCCGAGTCCTGAGTCCCTGGATTTAGGAA GCAGGCTCCCCTCCCGAGTCCTGGGTCCCTGGATTTAGGAA < 41bp 0.493677856186223 0.706688209427876 0.18786249 0.38693243 prediction 0.413376418855752 Functional Gain - NFATC3 ENSG00000072736 CDS Human protein_coding chr16:68260337 chr16:68260340 nonsynonymous SNV 0.097 0 24 hm5C_associated_SNPs_126358 0 0 1 0 1 NFATC3 chr16:68260253 3'AG 68260253 Downstream 88bp
chr7 2611256 2611256 1 + C T rs199781382 2611255 + 2611235 2611275 41 GCGGCCGAGCGTCCCTGACCCCGCAGAAGCTGTGGCTGGGA GCGGCCGAGCGTCCCTGACCCTGCAGAAGCTGTGGCTGGGA < 41bp 0.634158149368812 0.840841738829695 0.47516528 0.40550867 prediction 0.413367178921765 Functional Gain - IQCE ENSG00000106012 CDS Human protein_coding chr7:2611255 chr7:2611256 nonsynonymous SNV 0.900 3 22 hm5C_associated_SNPs_126361 0 0 0 0 1 IQCE chr7:2611288 5'GT 2611288 Upstream 33bp
chr10 13234263 13234263 1 + C T HNSC 13234262 + 13234242 13234282 41 TGACCTGGCACAGGAATACCCCAGAAGAGCCTGTCTTGCTC TGACCTGGCACAGGAATACCCTAGAAGAGCCTGTCTTGCTC < 41bp 0.631308384789779 0.837989726336602 0.4968885 0.7499336 prediction 0.413362683093646 Functional Gain - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13234262 chr10:13234263 stopgain 0.998 0 22 hm5C_associated_SNPs_126362 0 0 1 0 1 MCM10 chr10:13234255 3'AG 13234255 Downstream 9bp
chr19 49671625 49671625 1 + T C UCEC 49671623 + 49671603 49671643 41 GGGGGCACCAAGGTGGTGGCCATGGGTGTGGCCCCCTGGGG GGGGGCACCAAGGTGGTGGCCACGGGTGTGGCCCCCTGGGG < 41bp 0.634223990492539 0.840902708128375 0.9158615 0.91231835 prediction 0.413357435271672 Functional Gain - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49671623 chr19:49671625 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_126363 0 0 0 0 1 TRPM4 chr19:49671680 5'GT 49671680 Upstream 56bp
chrX 48380282 48380282 1 + C A rs782026815 48380278 + 48380258 48380298 41 GGAGCCAGCGTGGGAGGCCGCTGCCGTCGCGCGCCTTGGTG GGAGCCAGCGTGGGAGGCCGCTGCAGTCGCGCGCCTTGGTG < 41bp 0.71047539368065 0.917152942098652 0.6872501 0.89335567 prediction 0.413355096836005 Functional Gain - EBP ENSG00000147155 UTR5 Human protein_coding chrX:48380278 chrX:48380282 . . 0 25 hm5C_associated_SNPs_126365 0 0 1 0 1 EBP chrX:48380295 5'GT 48380295 Upstream 14bp
chr12 72332824 72332824 1 + C A STAD 72332823 + 72332803 72332843 41 TGGGCACGGAGAGGGTTTTCCCTGGATTCAGCAGTGCCCGA TGGGCACGGAGAGGGTTTTCCATGGATTCAGCAGTGCCCGA < 41bp 0.613915098519416 0.820585741291578 0.3563254 0.52337325 prediction 0.413341285544325 Functional Gain - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72332823 chr12:72332824 nonsynonymous SNV 0.629 3 22 hm5C_associated_SNPs_126372 0 0 0 0 1 TPH2 chr12:72332871 5'GT 72332871 Upstream 48bp
chr2 74757613 74757613 1 + C G rs2231248 74757612 + 74757592 74757632 41 GGTGGAGAAGACAGCACCTGCCGTGGTCTATATCGAGATCC GGTGGAGAAGACAGCACCTGCGGTGGTCTATATCGAGATCC < 41bp 0.391193902895538 0.70666073531361 0.37738615 0.37562644 prediction 0.41332147062722 Functional Gain - HTRA2 ENSG00000115317 CDS Human protein_coding chr2:74757612 chr2:74757613 synonymous SNV . 0 22 hm5C_associated_SNPs_126374 1 0 0 0 1 HTRA2 chr2:74757639 5'GT 74757639 Upstream 27bp
chr8 22398214 22398214 1 + C A BLCA 22398213 + 22398193 22398233 41 ATTAATGAGCGAATGCCACCCCGAAAGGATAGCATACACGC ATTAATGAGCGAATGCCACCCAGAAAGGATAGCATACACGC < 41bp 0.627565019628973 0.834225295432728 0.14323255 0.19794491 prediction 0.413320551607508 Functional Gain - PPP3CC ENSG00000120910 CDS Human protein_coding chr8:22398213 chr8:22398214 synonymous SNV . 0 22 hm5C_associated_SNPs_126375 0 0 1 0 1 PPP3CC chr8:22398128 3'AG 22398128 Downstream 87bp
chr9 127618589 127618589 1 + T C LIHC 127618586 + 127618566 127618606 41 GAGCAGCGACTTCTCACCCACGGTGAACTGCCTGGTGAGCC GAGCAGCGACTTCTCACCCACGGCGAACTGCCTGGTGAGCC < 41bp 0.501440093673583 0.708093105177945 0.9136038 0.9098505 prediction 0.413306023008725 Functional Gain - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127618586 chr9:127618589 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_126376 0 0 0 0 2 WDR38 chr9:127618519 3'AG 127618519 Downstream 71bp
chr9 127618589 127618589 1 + T C LIHC 127618586 + 127618566 127618606 41 GAGCAGCGACTTCTCACCCACGGTGAACTGCCTGGTGAGCC GAGCAGCGACTTCTCACCCACGGCGAACTGCCTGGTGAGCC < 41bp 0.501440093673583 0.708093105177945 0.9136038 0.9098505 prediction 0.413306023008725 Functional Gain - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127618586 chr9:127618589 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_126376 0 0 0 0 2 WDR38 chr9:127618599 5'GT 127618599 Upstream 11bp
chr10 105181270 105181270 1 + C T UCEC 105181269 + 105181249 105181289 41 GCTATCACCAGCCTCCTCCTCCTGAATCAGTGCCTGGAGGA GCTATCACCAGCCTCCTCCTCTTGAATCAGTGCCTGGAGGA < 41bp 0.439793263471454 0.706651594362471 0.30524227 0.24798161 prediction 0.413303188724943 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105181269 chr10:105181270 synonymous SNV . 0 22 hm5C_associated_SNPs_126377 0 0 1 0 1 PDCD11 chr10:105181324 5'GT 105181324 Upstream 55bp
chr6 26388520 26388520 1 + C T STAD 26388519 + 26388499 26388539 41 AGGAAACTGTCATTTTTATTCCAGGTTAGTTCTCTGCCCTC AGGAAACTGTCATTTTTATTCTAGGTTAGTTCTCTGCCCTC < 41bp 0.584721422541914 0.791366877882293 0.8870779 0.7110506 prediction 0.413290910680757 Functional Gain - BTN2A2 ENSG00000124508 CDS Human protein_coding chr6:26388519 chr6:26388520 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_126380 0 0 1 0 1 BTN2A2 chr6:26388522 5'GT 26388522 Upstream 3bp
chr3 38411602 38411602 1 + T A LUSC 38411600 + 38411580 38411620 41 AAGTCTGGTCCCAGGCTTGCCTTGGTGCCTGTGCACCTCAT AAGTCTGGTCCCAGGCTTGCCTAGGTGCCTGTGCACCTCAT < 41bp 0.508579916622189 0.715215422117688 0.20345947 0.5234709 prediction 0.413271010990997 Functional Gain - XYLB ENSG00000093217 CDS Human protein_coding chr3:38411600 chr3:38411602 synonymous SNV . 0 23 hm5C_associated_SNPs_126385 0 0 1 0 2 XYLB chr3:38411547 3'AG 38411547 Downstream 56bp
chr3 38411602 38411602 1 + T A LUSC 38411600 + 38411580 38411620 41 AAGTCTGGTCCCAGGCTTGCCTTGGTGCCTGTGCACCTCAT AAGTCTGGTCCCAGGCTTGCCTAGGTGCCTGTGCACCTCAT < 41bp 0.508579916622189 0.715215422117688 0.20345947 0.5234709 prediction 0.413271010990997 Functional Gain - XYLB ENSG00000093217 CDS Human protein_coding chr3:38411600 chr3:38411602 synonymous SNV . 0 23 hm5C_associated_SNPs_126385 0 0 1 0 2 XYLB chr3:38411665 5'GT 38411665 Upstream 64bp
chr10 17891669 17891669 1 + C A LUSC 17891668 + 17891648 17891688 41 CACAGAGATGAGAAAAAAATCCAGAGGGATGCTCTGACCAC CACAGAGATGAGAAAAAAATCAAGAGGGATGCTCTGACCAC < 41bp 0.451956028280456 0.706632453028763 0.83111143 0.88075745 prediction 0.413264906057526 Functional Gain - MRC1 ENSG00000183748 CDS Human other chr10:17891668 chr10:17891669 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_126386 0 0 0 0 2 MRC1 chr10:17891583 3'AG 17891583 Downstream 87bp
chr10 17891669 17891669 1 + C A LUSC 17891668 + 17891648 17891688 41 CACAGAGATGAGAAAAAAATCCAGAGGGATGCTCTGACCAC CACAGAGATGAGAAAAAAATCAAGAGGGATGCTCTGACCAC < 41bp 0.451956028280456 0.706632453028763 0.83111143 0.88075745 prediction 0.413264906057526 Functional Gain - MRC1 ENSG00000183748 CDS Human other chr10:17891668 chr10:17891669 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_126386 0 0 0 0 2 MRC1 chr10:17891768 5'GT 17891768 Upstream 100bp
chr3 9956446 9956446 1 + C T UCEC 9956445 + 9956425 9956465 41 GTTGTTCTGGCCCTCACCTGCCGGCGCCCACAGTCAGGTAA GTTGTTCTGGCCCTCACCTGCTGGCGCCCACAGTCAGGTAA < 41bp 0.474228249681921 0.706628216302255 0.85400355 0.80887353 prediction 0.413256432604511 Functional Gain - IL17RE ENSG00000163701 CDS Human protein_coding chr3:9956445 chr3:9956446 nonsynonymous SNV 0.003 2 22 hm5C_associated_SNPs_126387 0 0 0 0 2 IL17RE chr3:9956363 3'AG 9956363 Downstream 84bp
chr3 9956446 9956446 1 + C T UCEC 9956445 + 9956425 9956465 41 GTTGTTCTGGCCCTCACCTGCCGGCGCCCACAGTCAGGTAA GTTGTTCTGGCCCTCACCTGCTGGCGCCCACAGTCAGGTAA < 41bp 0.474228249681921 0.706628216302255 0.85400355 0.80887353 prediction 0.413256432604511 Functional Gain - IL17RE ENSG00000163701 CDS Human protein_coding chr3:9956445 chr3:9956446 nonsynonymous SNV 0.003 2 22 hm5C_associated_SNPs_126387 0 0 0 0 2 IL17RE chr3:9956461 5'GT 9956461 Upstream 16bp
chr5 148579953 148579953 1 + T C LUAD 148579951 + 148579931 148579971 41 TGCCAAACGTGCTCCCAGTCCATGGCCAGCAGTAAGCCCAT TGCCAAACGTGCTCCCAGTCCACGGCCAGCAGTAAGCCCAT < 41bp 0.429078925329787 0.706627633440722 0.06690875 0.12958977 prediction 0.413255266881444 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148579951 chr5:148579953 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_126388 0 0 0 0 2 ABLIM3 chr5:148579879 3'AG 148579879 Downstream 75bp
chr5 148579953 148579953 1 + T C LUAD 148579951 + 148579931 148579971 41 TGCCAAACGTGCTCCCAGTCCATGGCCAGCAGTAAGCCCAT TGCCAAACGTGCTCCCAGTCCACGGCCAGCAGTAAGCCCAT < 41bp 0.429078925329787 0.706627633440722 0.06690875 0.12958977 prediction 0.413255266881444 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148579951 chr5:148579953 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_126388 0 0 0 0 2 ABLIM3 chr5:148579991 5'GT 148579991 Upstream 39bp
chr1 35220793 35220793 1 + T G rs553063652 35220790 + 35220770 35220810 41 GGAGAGCCCTGAGGAGTAGTCACTCAGGTAAGGGCATCTGT GGAGAGCCCTGAGGAGTAGTCACGCAGGTAAGGGCATCTGT < 41bp 0.39924112724111 0.706625716983612 0.06924772 0.44428304 prediction 0.413251433967225 Functional Gain - GJB5 ENSG00000189280 UTR5 Human protein_coding chr1:35220790 chr1:35220793 . . 0 24 hm5C_associated_SNPs_126390 0 0 0 0 1 GJB5 chr1:35220796 5'GT 35220796 Upstream 4bp
chrX 152097202 152097202 1 + T C UCEC 152097200 + 152097180 152097220 41 GTGGCCCCAGACGTGGAAGGCATGAGGTATGGGGGTCCTGC GTGGCCCCAGACGTGGAAGGCACGAGGTATGGGGGTCCTGC < 41bp 0.640034058080807 0.846657905355972 0.57196796 0.6946026 prediction 0.41324769455033 Functional Gain - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152097200 chrX:152097202 nonsynonymous SNV 0.854 0 23 hm5C_associated_SNPs_126392 0 0 0 0 2 ZNF185 chrX:152097119 3'AG 152097119 Downstream 84bp
chrX 152097202 152097202 1 + T C UCEC 152097200 + 152097180 152097220 41 GTGGCCCCAGACGTGGAAGGCATGAGGTATGGGGGTCCTGC GTGGCCCCAGACGTGGAAGGCACGAGGTATGGGGGTCCTGC < 41bp 0.640034058080807 0.846657905355972 0.57196796 0.6946026 prediction 0.41324769455033 Functional Gain - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152097200 chrX:152097202 nonsynonymous SNV 0.854 0 23 hm5C_associated_SNPs_126392 0 0 0 0 2 ZNF185 chrX:152097205 5'GT 152097205 Upstream 4bp
chr11 34097866 34097866 1 + T C BLCA 34097864 + 34097844 34097884 41 AGAAACGTTTAAAAACTGTACTTGAGCTACAGTATGTTTTG AGAAACGTTTAAAAACTGTACTCGAGCTACAGTATGTTTTG < 41bp 0.405703609369952 0.706621592086988 0.084264904 0.18778026 prediction 0.413243184173976 Functional Gain - CAPRIN1 ENSG00000135387 CDS Human protein_coding chr11:34097864 chr11:34097866 synonymous SNV . 0 23 hm5C_associated_SNPs_126393 0 0 1 0 1 CAPRIN1 chr11:34097783 3'AG 34097783 Downstream 84bp
chr5 96078409 96078409 1 + C T SKCM 96078408 + 96078388 96078428 41 TCTGTCGGCTTCACTGGGCACCCGGCAAGCAGAACCTGAGC TCTGTCGGCTTCACTGGGCACTCGGCAAGCAGAACCTGAGC < 41bp 0.568525065458349 0.77514075067415 0.18529895 0.37595183 prediction 0.413231370431602 Functional Gain - CAST ENSG00000153113 CDS Human protein_coding chr5:96078408 chr5:96078409 synonymous SNV . 0 22 hm5C_associated_SNPs_126396 0 0 1 0 1 CAST chr5:96078359 3'AG 96078359 Downstream 51bp
chr16 57394457 57394457 1 + C T rs147844594 57394456 + 57394436 57394476 41 ACTGGACCTCAGACTCCTGCCCGAGGCCTGGCGTGGTGTGA ACTGGACCTCAGACTCCTGCCTGAGGCCTGGCGTGGTGTGA < 41bp 0.461357684298221 0.7066142241846 0.84198236 0.37158477 prediction 0.413228448369199 Functional Gain - CCL22 ENSG00000102962 CDS Human protein_coding chr16:57394456 chr16:57394457 nonsynonymous SNV 0.454 0 22 hm5C_associated_SNPs_126397 0 0 0 0 1 CCL22 chr16:57394472 5'GT 57394472 Upstream 16bp
chr1 24120993 24120993 1 + T A UCEC 24120989 + 24120969 24121009 41 TGGACCCCATGGTGCCCGTACGGTTTGGGGCCCTGACGGCT TGGACCCCATGGTGCCCGTACGGTATGGGGCCCTGACGGCT < 41bp 0.361501591601537 0.706613345399148 0.32259527 0.26001436 prediction 0.413226690798297 Functional Gain - LYPLA2 ENSG00000011009 CDS Human protein_coding chr1:24120989 chr1:24120993 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_126399 0 0 1 0 2 LYPLA2 chr1:24120917 3'AG 24120917 Downstream 77bp
chr1 24120993 24120993 1 + T A UCEC 24120989 + 24120969 24121009 41 TGGACCCCATGGTGCCCGTACGGTTTGGGGCCCTGACGGCT TGGACCCCATGGTGCCCGTACGGTATGGGGCCCTGACGGCT < 41bp 0.361501591601537 0.706613345399148 0.32259527 0.26001436 prediction 0.413226690798297 Functional Gain - LYPLA2 ENSG00000011009 CDS Human protein_coding chr1:24120989 chr1:24120993 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_126399 0 0 1 0 2 LYPLA2 chr1:24121090 5'GT 24121090 Upstream 98bp
chr16 31770723 31770723 1 + T A rs12921028 31770719 + 31770699 31770739 41 AAAAATCAACAAGATAATCTCTGCTTGAGAAAAAGGACCAA AAAAATCAACAAGATAATCTCTGCATGAGAAAAAGGACCAA < 41bp 0.431261430971814 0.706613327482752 0.040992916 0.22170374 prediction 0.413226654965504 Functional Gain - ZNF720 ENSG00000197302 UTR3 Human protein_coding chr16:31770719 chr16:31770723 . . 0 25 hm5C_associated_SNPs_126400 0 0 0 4 1 ZNF720 chr16:31770678 3'AG 31770678 Downstream 46bp
chr3 14508141 14508141 1 + C A THCA 14508137 + 14508117 14508157 41 TTCTATCTGTATCCTGACATCACCCGCCTTGAGGACCCACA TTCTATCTGTATCCTGACATCACCAGCCTTGAGGACCCACA < 41bp 0.26991483821132 0.706611727532856 0.05701956 0.23429084 prediction 0.413223455065713 Functional Gain - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14508137 chr3:14508141 nonsynonymous SNV 0.994 2 25 hm5C_associated_SNPs_126401 0 0 1 0 1 SLC6A6 chr3:14508158 5'GT 14508158 Upstream 18bp
chr11 63971543 63971543 1 + T C UCEC 63971540 + 63971520 63971560 41 CTGTAGACACTTAAAGAATCCTGTAATAGCACAGAAGATCC CTGTAGACACTTAAAGAATCCTGCAATAGCACAGAAGATCC < 41bp 0.481892774128428 0.706609888029342 0.20526111 0.25463712 prediction 0.413219776058683 Functional Gain - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63971540 chr11:63971543 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_126402 0 0 1 0 1 STIP1 chr11:63971526 3'AG 63971526 Downstream 18bp
chr16 77233329 77233329 1 + C A rs114764479 77233325 + 77233305 77233345 41 ACCAGTCATCAAGCGAGGCTCGCGCGCAGGCCCCGCGTTGG ACCAGTCATCAAGCGAGGCTCGCGAGCAGGCCCCGCGTTGG < 41bp 0.711178805135054 0.917784985218498 0.22814456 0.4281747 prediction 0.413212360166887 Functional Gain - SYCE1L;MON1B ENSG00000205078;ENSG00000103111 UTR5;UTR3 Human protein_coding chr16:77233325 chr16:77233329 . . 0 25 hm5C_associated_SNPs_126404 0 0 1 0 1 SYCE1L chr16:77233409 5'GT 77233409 Upstream 81bp
chr6 31515979 31515979 1 + C T CESC 31515978 + 31515958 31515998 41 TCCACTTCCCGCCGCCAACGCCGAGAACGTCGCTTTCGTCG TCCACTTCCCGCCGCCAACGCTGAGAACGTCGCTTTCGTCG < 41bp 0.499289996585418 0.706605641472621 0.8103592 0.37453437 prediction 0.413211282945242 Functional Gain - NFKBIL1 ENSG00000204498 CDS Human protein_coding chr6:31515978 chr6:31515979 stopgain 0.998 1 22 hm5C_associated_SNPs_126405 0 0 1 0 1 NFKBIL1 chr6:31515940 3'AG 31515940 Downstream 40bp
chr14 24538064 24538064 1 + C A LUAD 24538063 + 24538043 24538083 41 CCCAGGGGCCGCCAGCCTCCCCAGGAGCCAGGGGTCAGGGA CCCAGGGGCCGCCAGCCTCCCAAGGAGCCAGGGGTCAGGGA < 41bp 0.44295082470674 0.706604379104619 0.25057614 0.32520384 prediction 0.413208758209239 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24538063 chr14:24538064 nonsynonymous SNV 0.752 1 22 hm5C_associated_SNPs_126406 0 0 0 0 1 CARMIL3 chr14:24537995 3'AG 24537995 Downstream 70bp
chr1 44685497 44685497 1 + T C GBM 44685494 + 44685474 44685514 41 GCAGATGAAGCTGCCAAGCTCTGTGGGACAGAAGAAGATCA GCAGATGAAGCTGCCAAGCTCTGCGGGACAGAAGAAGATCA < 41bp 0.58576079923243 0.792364351464561 0.3804477 0.6112014 prediction 0.413207104464262 Functional Gain - DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44685494 chr1:44685497 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_126407 0 0 1 0 2 DMAP1 chr1:44685478 3'AG 44685478 Downstream 20bp
chr1 44685497 44685497 1 + T C GBM 44685494 + 44685474 44685514 41 GCAGATGAAGCTGCCAAGCTCTGTGGGACAGAAGAAGATCA GCAGATGAAGCTGCCAAGCTCTGCGGGACAGAAGAAGATCA < 41bp 0.58576079923243 0.792364351464561 0.3804477 0.6112014 prediction 0.413207104464262 Functional Gain - DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44685494 chr1:44685497 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_126407 0 0 1 0 2 DMAP1 chr1:44685550 5'GT 44685550 Upstream 54bp
chr19 48229404 48229404 1 + C A rs150300804 48229400 + 48229380 48229420 41 GAGCTGGAGGAGCAGGACCTCTTCCGCGACATCCAGGGCCT GAGCTGGAGGAGCAGGACCTCTTCAGCGACATCCAGGGCCT < 41bp 0.28548865064603 0.706598602491606 0.43065244 0.8237418 prediction 0.413197204983212 Functional Gain - EHD2 ENSG00000024422 CDS Human protein_coding chr19:48229400 chr19:48229404 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_126409 0 0 1 0 1 EHD2 chr19:48229481 5'GT 48229481 Upstream 78bp
chr10 71582174 71582174 1 + C T SKCM 71582173 + 71582153 71582193 41 GGGAGGCCCCAAAGACATCTCCAGGATGTAACTGCCCACCA GGGAGGCCCCAAAGACATCTCTAGGATGTAACTGCCCACCA < 41bp 0.592490605966484 0.799087929751299 0.6089189 0.7699177 prediction 0.413194647569629 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71582173 chr10:71582174 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_126410 0 0 0 0 2 COL13A1 chr10:71582125 3'AG 71582125 Downstream 50bp
chr10 71582174 71582174 1 + C T SKCM 71582173 + 71582153 71582193 41 GGGAGGCCCCAAAGACATCTCCAGGATGTAACTGCCCACCA GGGAGGCCCCAAAGACATCTCTAGGATGTAACTGCCCACCA < 41bp 0.592490605966484 0.799087929751299 0.6089189 0.7699177 prediction 0.413194647569629 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71582173 chr10:71582174 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_126410 0 0 0 0 2 COL13A1 chr10:71582194 5'GT 71582194 Upstream 21bp
chr5 78417152 78417152 1 + C A rs60947960 78417148 + 78417128 78417168 41 CCAGAAGGAGATTTGCATGGCGTGCCCCCCGGCGAGTGTGC CCAGAAGGAGATTTGCATGGCGTGACCCCCGGCGAGTGTGC < 41bp 0.297297393791728 0.706596181691783 0.05699402 0.22819445 prediction 0.413192363383566 Functional Gain - BHMT ENSG00000145692 CDS Human protein_coding chr5:78417148 chr5:78417152 nonsynonymous SNV 0.016 0 25 hm5C_associated_SNPs_126412 0 0 0 0 1 BHMT chr5:78417188 5'GT 78417188 Upstream 37bp
chr4 142150761 142150761 1 + C A SKCM 142150760 + 142150740 142150780 41 TTCTGTGAAGCTTGGGTTTGCCATGGTAGGAAATGTCTCAG TTCTGTGAAGCTTGGGTTTGCAATGGTAGGAAATGTCTCAG < 41bp 0.444189554979291 0.70659343394891 0.18708175 0.17077172 prediction 0.413186867897821 Functional Gain - ZNF330 ENSG00000109445 CDS Human protein_coding chr4:142150760 chr4:142150761 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_126417 0 0 1 0 1 ZNF330 chr4:142150851 5'GT 142150851 Upstream 91bp
chr7 101187320 101187320 1 + C T SKCM 101187319 + 101187299 101187339 41 CCACCAGGGCCTGCAGGCCCCCCCGGGTCTAAAGGTGACCG CCACCAGGGCCTGCAGGCCCCTCCGGGTCTAAAGGTGACCG < 41bp 0.456839801118499 0.706589005551085 0.15748438 0.367076 prediction 0.413178011102169 Functional Gain - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101187319 chr7:101187320 nonsynonymous SNV 0.944 2 22 hm5C_associated_SNPs_126419 0 0 1 0 2 COL26A1 chr7:101187279 3'AG 101187279 Downstream 42bp
chr7 101187320 101187320 1 + C T SKCM 101187319 + 101187299 101187339 41 CCACCAGGGCCTGCAGGCCCCCCCGGGTCTAAAGGTGACCG CCACCAGGGCCTGCAGGCCCCTCCGGGTCTAAAGGTGACCG < 41bp 0.456839801118499 0.706589005551085 0.15748438 0.367076 prediction 0.413178011102169 Functional Gain - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101187319 chr7:101187320 nonsynonymous SNV 0.944 2 22 hm5C_associated_SNPs_126419 0 0 1 0 2 COL26A1 chr7:101187377 5'GT 101187377 Upstream 58bp
chr4 2691333 2691333 1 + C T SKCM 2691332 + 2691312 2691352 41 CGAGCTGTTTTGGGAATACTCCAGAGTGGAATAGTTCTAAA CGAGCTGTTTTGGGAATACTCTAGAGTGGAATAGTTCTAAA < 41bp 0.62758794224912 0.834172018966086 0.75200385 0.3456572 prediction 0.413168153433932 Functional Gain - FAM193A ENSG00000125386 CDS Human protein_coding chr4:2691332 chr4:2691333 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_126420 0 0 1 0 1 FAM193A chr4:2691431 5'GT 2691431 Upstream 99bp
chr1 1268457 1268457 1 + C A rs139115619 1268453 + 1268433 1268473 41 GACGTGGGCAGGTTCAACGGCAGCCTCAGGACAGAGCGCCT GACGTGGGCAGGTTCAACGGCAGCATCAGGACAGAGCGCCT < 41bp 0.29086116912839 0.706571093688147 0.28471056 0.2238611 prediction 0.413142187376294 Functional Gain - TAS1R3 ENSG00000169962 CDS Human protein_coding chr1:1268453 chr1:1268457 nonsynonymous SNV 0.008 4 25 hm5C_associated_SNPs_126426 0 0 0 0 1 TAS1R3 chr1:1268504 5'GT 1268504 Upstream 48bp
chrX 68836505 68836505 1 + C T CESC 68836504 + 68836484 68836524 41 CTAAGCAGCAGCCATTGGAACCGGGAGAAGCCGCACTCCAC CTAAGCAGCAGCCATTGGAACTGGGAGAAGCCGCACTCCAC < 41bp 0.556946496654676 0.763516477668407 0.9134989 0.8825918 prediction 0.413139962027462 Functional Gain - EDA ENSG00000158813 CDS Human protein_coding chrX:68836504 chrX:68836505 nonsynonymous SNV 0.661 2 22 hm5C_associated_SNPs_126427 0 0 0 0 1 EDA chrX:68836548 5'GT 68836548 Upstream 44bp
chr11 67187016 67187016 1 + C A LUSC 67187015 + 67186995 67187035 41 GGCAGGCATGGCGTCTGCACCCGCGGGCAGAGCTGGGTGCA GGCAGGCATGGCGTCTGCACCAGCGGGCAGAGCTGGGTGCA < 41bp 0.637300305767804 0.84386640024093 0.8423646 0.8863826 prediction 0.413132188946252 Functional Gain - CARNS1 ENSG00000172508;ENSG00000172531 CDS Human other chr11:67187015 chr11:67187016 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_126429 0 0 0 0 1 CARNS1 chr11:67186958 3'AG 67186958 Downstream 59bp
chr2 61148917 61148917 1 + T G SKCM 61148915 + 61148895 61148935 41 CAGAACCAAACTTGTTTTCTCATGATGCAGTTGTGAGAGAA CAGAACCAAACTTGTTTTCTCAGGATGCAGTTGTGAGAGAA < 41bp 0.38475807381139 0.706565485281911 0.23764902 0.87162375 prediction 0.413130970563821 Functional Gain - REL ENSG00000162924 CDS Human protein_coding chr2:61148915 chr2:61148917 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_126430 0 0 1 0 1 REL chr2:61148898 3'AG 61148898 Downstream 20bp
chr4 2899948 2899948 1 + C T UCEC 2899947 + 2899927 2899967 41 GTGGCCTCTTGCCAATCTCCCCGGAGGCGCTTTCCCTTGGA GTGGCCTCTTGCCAATCTCCCTGGAGGCGCTTTCCCTTGGA < 41bp 0.605162882597925 0.811727297963233 0.79189265 0.8223727 prediction 0.413128830730617 Functional Gain - ADD1 ENSG00000087274 CDS Human protein_coding chr4:2899947 chr4:2899948 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_126431 0 0 1 0 1 ADD1 chr4:2899911 3'AG 2899911 Downstream 38bp
chr12 7063977 7063977 1 + T C SKCM 7063975 + 7063955 7063995 41 CTGCCTTCTCTAGGTGGTACCATGGCCACATGTCTGGCGGG CTGCCTTCTCTAGGTGGTACCACGGCCACATGTCTGGCGGG < 41bp 0.629523888687642 0.83608274421778 0.9208799 0.90767896 prediction 0.413117711060276 Functional Gain - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7063975 chr12:7063977 synonymous SNV . 0 23 hm5C_associated_SNPs_126435 0 0 0 0 1 PTPN6 chr12:7063968 3'AG 7063968 Downstream 10bp
chr1 28857058 28857058 1 + C T BLCA 28857057 + 28857037 28857077 41 ACGAGGGCCGCTGCCTCCCGCCGCGTTCCTGGCGCCCGCTC ACGAGGGCCGCTGCCTCCCGCTGCGTTCCTGGCGCCCGCTC < 41bp 0.584184269795179 0.790741049429423 0.33740076 0.2887169 prediction 0.413113559268489 Functional Gain - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28857057 chr1:28857058 nonsynonymous SNV 0.008 0 22 hm5C_associated_SNPs_126436 0 0 1 0 3 RCC1 chr1:28857035 3'AG 28857035 Downstream 24bp
chr1 28857058 28857058 1 + C T BLCA 28857057 + 28857037 28857077 41 ACGAGGGCCGCTGCCTCCCGCCGCGTTCCTGGCGCCCGCTC ACGAGGGCCGCTGCCTCCCGCTGCGTTCCTGGCGCCCGCTC < 41bp 0.584184269795179 0.790741049429423 0.33740076 0.2887169 prediction 0.413113559268489 Functional Gain - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28857057 chr1:28857058 nonsynonymous SNV 0.008 0 22 hm5C_associated_SNPs_126436 0 0 1 0 3 RCC1 chr1:28857085 5'GT 28857085 Upstream 28bp
chr1 28857058 28857058 1 + C T BLCA 28857057 + 28857037 28857077 41 ACGAGGGCCGCTGCCTCCCGCCGCGTTCCTGGCGCCCGCTC ACGAGGGCCGCTGCCTCCCGCTGCGTTCCTGGCGCCCGCTC < 41bp 0.584184269795179 0.790741049429423 0.33740076 0.2887169 prediction 0.413113559268489 Functional Gain - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28857057 chr1:28857058 nonsynonymous SNV 0.008 0 22 hm5C_associated_SNPs_126436 0 0 1 0 3 RCC1 chr1:28857127 5'GT 28857127 Upstream 70bp
chr14 21464395 21464395 1 + T C rs35308618 21464392 + 21464372 21464412 41 CCCATGAACTCCCTTGTCCCCAGTTGACCAACCTGGCCTGT CCCATGAACTCCCTTGTCCCCAGCTGACCAACCTGGCCTGT < 41bp 0.522797605049785 0.729343674676929 0.2244558 0.38972503 prediction 0.413092139254289 Functional Gain - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21464392 chr14:21464395 synonymous SNV . 0 24 hm5C_associated_SNPs_126441 0 0 1 0 1 METTL17 chr14:21464451 5'GT 21464451 Upstream 57bp
chr6 76369060 76369060 1 + T C rs370794979 76369057 + 76369037 76369077 41 AAAGTACAACAGAAACGACACTGTAGTACCTATCAGCCTAC AAAGTACAACAGAAACGACACTGCAGTACCTATCAGCCTAC < 41bp 0.484996994922589 0.706544430581758 0.050320894 0.08806166 prediction 0.413088861163517 Functional Gain - SENP6 ENSG00000112701 CDS Human protein_coding chr6:76369057 chr6:76369060 synonymous SNV . 0 24 hm5C_associated_SNPs_126442 0 0 1 0 2 SENP6 chr6:76368978 3'AG 76368978 Downstream 83bp
chr6 76369060 76369060 1 + T C rs370794979 76369057 + 76369037 76369077 41 AAAGTACAACAGAAACGACACTGTAGTACCTATCAGCCTAC AAAGTACAACAGAAACGACACTGCAGTACCTATCAGCCTAC < 41bp 0.484996994922589 0.706544430581758 0.050320894 0.08806166 prediction 0.413088861163517 Functional Gain - SENP6 ENSG00000112701 CDS Human protein_coding chr6:76369057 chr6:76369060 synonymous SNV . 0 24 hm5C_associated_SNPs_126442 0 0 1 0 2 SENP6 chr6:76369123 5'GT 76369123 Upstream 64bp
chr6 36410801 36410801 1 + C A rs2273883 36410797 + 36410777 36410817 41 GCGCGCCGCTGCGGCACAGCCGGTCCCGGCTGCGGCTTCTG GCGCGCCGCTGCGGCACAGCCGGTACCGGCTGCGGCTTCTG < 41bp 0.676691227046187 0.883233094615494 0.67825043 0.7990014 prediction 0.413083735138615 Functional Gain - KCTD20 ENSG00000112078 UTR5 Human protein_coding chr6:36410797 chr6:36410801 . . 0 25 hm5C_associated_SNPs_126445 0 0 1 0 1 KCTD20 chr6:36410888 5'GT 36410888 Upstream 88bp
chr10 69961644 69961644 1 + C T LUAD 69961643 + 69961623 69961663 41 ACTACAGAACTGCGGTGTTCCCGAAGGCCACCCCGTGAGAC ACTACAGAACTGCGGTGTTCCTGAAGGCCACCCCGTGAGAC < 41bp 0.630235952305119 0.836773991989427 0.88981164 0.38392124 prediction 0.413076079368616 Functional Gain - MYPN ENSG00000138347 CDS Human protein_coding chr10:69961643 chr10:69961644 synonymous SNV . 0 22 hm5C_associated_SNPs_126447 1 0 0 0 1 MYPN chr10:69961586 3'AG 69961586 Downstream 59bp
chr11 88242027 88242027 1 + C G rs569668690 88242023 + 88242003 88242043 41 CCCTGCCGCGGGCTGCGCGCCTCCCGTGACTTCGATGGCCG CCCTGCCGCGGGCTGCGCGCCTCCGGTGACTTCGATGGCCG < 41bp 0.649856360708034 0.85639184363388 0.42782837 0.3084954 prediction 0.413070965851692 Functional Gain - GRM5 ENSG00000168959 CDS Human protein_coding chr11:88242023 chr11:88242027 synonymous SNV . 0 25 hm5C_associated_SNPs_126449 0 0 0 0 1 GRM5 chr11:88242107 5'GT 88242107 Upstream 81bp
chr13 31898005 31898005 1 + T C LUSC 31898003 + 31897983 31898023 41 GCTTTAGTGGCTTGGGAATCCCTGTGACACACAGCCCTCTC GCTTTAGTGGCTTGGGAATCCCCGTGACACACAGCCCTCTC < 41bp 0.419650154313136 0.706530850341475 0.0987207 0.17118785 prediction 0.41306170068295 Functional Gain - B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31898003 chr13:31898005 synonymous SNV . 0 23 hm5C_associated_SNPs_126454 0 0 1 0 1 B3GLCT chr13:31898032 5'GT 31898032 Upstream 28bp
chr2 219222364 219222364 1 + C T KIRP 219222363 + 219222343 219222383 41 GAGGTGCAGAGAGGGAAATACCAGGAAAAACTCGGCATGCT GAGGTGCAGAGAGGGAAATACTAGGAAAAACTCGGCATGCT < 41bp 0.606483343650327 0.813009523151686 0.87985146 0.49899545 prediction 0.413052359002718 Functional Gain - CATIP ENSG00000158428 CDS Human protein_coding chr2:219222363 chr2:219222364 stopgain 0.045 0 22 hm5C_associated_SNPs_126458 0 0 0 0 1 CATIP chr2:219222457 5'GT 219222457 Upstream 94bp
chr15 23608883 23608883 1 + C A rs2344788 23608879 + 23608859 23608899 41 GGAGGCACCTCGGCCCATTCCTAGCATCCCACAGGACCTGG GGAGGCACCTCGGCCCATTCCTAGAATCCCACAGGACCTGG < 41bp 0.737952139997752 0.944473799726101 0.33372268 0.42908302 prediction 0.413043319456698 Functional Gain - GOLGA8S ENSG00000261739 CDS Human protein_coding chr15:23608879 chr15:23608883 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_126461 0 0 0 0 2 GOLGA8S chr15:23608825 3'AG 23608825 Downstream 59bp
chr15 23608883 23608883 1 + C A rs2344788 23608879 + 23608859 23608899 41 GGAGGCACCTCGGCCCATTCCTAGCATCCCACAGGACCTGG GGAGGCACCTCGGCCCATTCCTAGAATCCCACAGGACCTGG < 41bp 0.737952139997752 0.944473799726101 0.33372268 0.42908302 prediction 0.413043319456698 Functional Gain - GOLGA8S ENSG00000261739 CDS Human protein_coding chr15:23608879 chr15:23608883 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_126461 0 0 0 0 2 GOLGA8S chr15:23608916 5'GT 23608916 Upstream 34bp
chr10 95400275 95400275 1 + T C rs199791062 95400273 + 95400253 95400293 41 TCACTTACCACAATTGGCGGCATGGGTTCAACGTGGGGCAG TCACTTACCACAATTGGCGGCACGGGTTCAACGTGGGGCAG < 41bp 0.431701102197948 0.706517036289689 0.1649383 0.19619787 prediction 0.413034072579378 Functional Gain - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95400273 chr10:95400275 synonymous SNV . 0 23 hm5C_associated_SNPs_126463 0 0 0 0 2 PDE6C chr10:95400207 3'AG 95400207 Downstream 69bp
chr10 95400275 95400275 1 + T C rs199791062 95400273 + 95400253 95400293 41 TCACTTACCACAATTGGCGGCATGGGTTCAACGTGGGGCAG TCACTTACCACAATTGGCGGCACGGGTTCAACGTGGGGCAG < 41bp 0.431701102197948 0.706517036289689 0.1649383 0.19619787 prediction 0.413034072579378 Functional Gain - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95400273 chr10:95400275 synonymous SNV . 0 23 hm5C_associated_SNPs_126463 0 0 0 0 2 PDE6C chr10:95400314 5'GT 95400314 Upstream 40bp
chr10 105172965 105172965 1 + C T SKCM 105172964 + 105172944 105172984 41 ACAGCCTGGACGCCCACTCACCCGACTCTCTTGCCAGAACC ACAGCCTGGACGCCCACTCACTCGACTCTCTTGCCAGAACC < 41bp 0.640431342914292 0.846941888788708 0.23841473 0.48968655 prediction 0.413021091748832 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105172964 chr10:105172965 synonymous SNV . 0 22 hm5C_associated_SNPs_126465 0 0 1 0 1 PDCD11 chr10:105172873 3'AG 105172873 Downstream 93bp
chr15 78556657 78556657 1 + T G rs542532667 78556655 + 78556635 78556675 41 CCGCCTTCTCCGGCCCCCGCCATGGCCCGGGGCGGCAGTCA CCGCCTTCTCCGGCCCCCGCCAGGGCCCGGGGCGGCAGTCA < 41bp 0.639511196050036 0.846018696997864 0.40644524 0.9340886 prediction 0.413015001895656 Functional Gain - DNAJA4 ENSG00000140403 CDS Human protein_coding chr15:78556655 chr15:78556657 nonsynonymous SNV 0.742 1 23 hm5C_associated_SNPs_126466 0 0 0 0 1 DNAJA4 chr15:78556735 5'GT 78556735 Upstream 79bp
chr7 141708357 141708357 1 + C G HNSC 141708356 + 141708336 141708376 41 ATCCTGGGACAACTGGTACCCCAGATCCTGGAACAACTGGT ATCCTGGGACAACTGGTACCCGAGATCCTGGAACAACTGGT < 41bp 0.397174466396267 0.706505193060419 0.5500014 0.75327986 prediction 0.413010386120838 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141708356 chr7:141708357 nonsynonymous SNV 0.005 0 22 hm5C_associated_SNPs_126467 0 0 0 0 1 MGAM chr7:141708306 3'AG 141708306 Downstream 52bp
chr10 1205871 1205871 1 + T C UCEC 1205869 + 1205849 1205889 41 CGCGCCTCACGCTTTATGTACATGAGGGATGAGGCAGCACA CGCGCCTCACGCTTTATGTACACGAGGGATGAGGCAGCACA < 41bp 0.534152669006305 0.740657055455376 0.14018813 0.082611054 prediction 0.413008772898142 Functional Gain - LINC00200 ENSG00000229205 ncRNA_exonic Human lincRNA chr10:1205869 chr10:1205871 . . 0 23 hm5C_associated_SNPs_126469 0 0 1 0 1 LINC00200 chr10:1205930 5'GT 1205930 Upstream 60bp
chr1 87040321 87040321 1 + A G rs150565626 87040318 + 87040298 87040338 41 AAGGACACGTTCTTTCTCATCACATGGAACAGTCTGCCTCC AAGGACACGTTCTTTCTCATCACGTGGAACAGTCTGCCTCC < 41bp 0.603253227942231 0.809757277348105 0.5239027 0.7398406 prediction 0.413008098811748 Functional Gain - CLCA4 ENSG00000016602 CDS Human protein_coding chr1:87040318 chr1:87040321 synonymous SNV . 0 24 hm5C_associated_SNPs_126470 0 0 0 0 1 CLCA4 chr1:87040223 3'AG 87040223 Downstream 99bp
chr12 21609014 21609014 1 + T A LAML 21609012 + 21608992 21609032 41 ATTGGCATGAAGGCTTGAATCTTAAAGGAACAAAAGAGGTA ATTGGCATGAAGGCTTGAATCTAAAAGGAACAAAAGAGGTA < 41bp 0.498950949149265 0.706484969205336 0.1718668 0.22031179 prediction 0.412969938410672 Functional Gain - PYROXD1 ENSG00000121350 CDS Human protein_coding chr12:21609012 chr12:21609014 synonymous SNV . 0 23 hm5C_associated_SNPs_126475 0 0 0 0 2 PYROXD1 chr12:21608929 3'AG 21608929 Downstream 86bp
chr12 21609014 21609014 1 + T A LAML 21609012 + 21608992 21609032 41 ATTGGCATGAAGGCTTGAATCTTAAAGGAACAAAAGAGGTA ATTGGCATGAAGGCTTGAATCTAAAAGGAACAAAAGAGGTA < 41bp 0.498950949149265 0.706484969205336 0.1718668 0.22031179 prediction 0.412969938410672 Functional Gain - PYROXD1 ENSG00000121350 CDS Human protein_coding chr12:21609012 chr12:21609014 synonymous SNV . 0 23 hm5C_associated_SNPs_126475 0 0 0 0 2 PYROXD1 chr12:21609029 5'GT 21609029 Upstream 16bp
chr7 100320670 100320670 1 + C T rs73409075 100320669 + 100320649 100320689 41 ACAATCACTGCTGACACTTTCCGCAAACTCTTCCGAGTCTA ACAATCACTGCTGACACTTTCTGCAAACTCTTCCGAGTCTA < 41bp 0.625953012971812 0.832437310912683 0.0965631 0.30562687 prediction 0.412968595881742 Functional Gain - EPO ENSG00000130427 CDS Human protein_coding chr7:100320669 chr7:100320670 nonsynonymous SNV 0.495 0 22 hm5C_associated_SNPs_126476 0 0 0 0 2 EPO chr7:100320601 3'AG 100320601 Downstream 70bp
chr7 100320670 100320670 1 + C T rs73409075 100320669 + 100320649 100320689 41 ACAATCACTGCTGACACTTTCCGCAAACTCTTCCGAGTCTA ACAATCACTGCTGACACTTTCTGCAAACTCTTCCGAGTCTA < 41bp 0.625953012971812 0.832437310912683 0.0965631 0.30562687 prediction 0.412968595881742 Functional Gain - EPO ENSG00000130427 CDS Human protein_coding chr7:100320669 chr7:100320670 nonsynonymous SNV 0.495 0 22 hm5C_associated_SNPs_126476 0 0 0 0 2 EPO chr7:100320604 3'AG 100320604 Downstream 67bp
chr1 244868943 244868943 1 + C T UCEC 244868942 + 244868922 244868962 41 CCTTTCTACAGAGTTGCCTCCCGAAGGAGTGGCTCACGCCC CCTTTCTACAGAGTTGCCTCCTGAAGGAGTGGCTCACGCCC < 41bp 0.620990814499675 0.827474995054378 0.8360989 0.1917525 prediction 0.412968361109407 Functional Gain - DESI2 ENSG00000121644 CDS Human protein_coding chr1:244868942 chr1:244868943 nonsynonymous SNV 0.938 3 22 hm5C_associated_SNPs_126477 0 0 1 0 1 DESI2 chr1:244868858 3'AG 244868858 Downstream 86bp
chr7 102952301 102952301 1 + T C LGG 102952298 + 102952278 102952318 41 ATTGGTAGGCAAATGTTATGCTATAATAGAAGGATTCCCAT ATTGGTAGGCAAATGTTATGCTACAATAGAAGGATTCCCAT < 41bp 0.563738430434298 0.770220771728462 0.33490157 0.55783373 prediction 0.412964682588329 Functional Gain - PMPCB ENSG00000105819 CDS Human protein_coding chr7:102952298 chr7:102952301 synonymous SNV . 0 24 hm5C_associated_SNPs_126479 0 0 1 0 2 PMPCB chr7:102952255 3'AG 102952255 Downstream 47bp
chr7 102952301 102952301 1 + T C LGG 102952298 + 102952278 102952318 41 ATTGGTAGGCAAATGTTATGCTATAATAGAAGGATTCCCAT ATTGGTAGGCAAATGTTATGCTACAATAGAAGGATTCCCAT < 41bp 0.563738430434298 0.770220771728462 0.33490157 0.55783373 prediction 0.412964682588329 Functional Gain - PMPCB ENSG00000105819 CDS Human protein_coding chr7:102952298 chr7:102952301 synonymous SNV . 0 24 hm5C_associated_SNPs_126479 0 0 1 0 2 PMPCB chr7:102952343 5'GT 102952343 Upstream 43bp
chr5 137681218 137681218 1 + C T COAD 137681217 + 137681197 137681237 41 CAGCCTTGTGATCTGGATGCCCGCAAAACTGGGGTCAAGCG CAGCCTTGTGATCTGGATGCCTGCAAAACTGGGGTCAAGCG < 41bp 0.444715344136195 0.706480645536196 0.19248274 0.34381735 prediction 0.412961291072392 Functional Gain - FAM53C ENSG00000120709 CDS Human protein_coding chr5:137681217 chr5:137681218 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_126481 0 0 1 0 1 FAM53C chr5:137681298 5'GT 137681298 Upstream 81bp
chr9 136405789 136405789 1 + T A PRAD 136405785 + 136405765 136405805 41 CCACCGTGGACGGCCAGCGGCAGCTCATGGTCCCCGCCCGC CCACCGTGGACGGCCAGCGGCAGCACATGGTCCCCGCCCGC < 41bp 0.363174892215295 0.706476327327582 0.025301993 0.14864054 prediction 0.412952654655164 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136405785 chr9:136405789 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_126482 0 0 0 0 2 ADAMTSL2 chr9:136405720 3'AG 136405720 Downstream 70bp
chr9 136405789 136405789 1 + T A PRAD 136405785 + 136405765 136405805 41 CCACCGTGGACGGCCAGCGGCAGCTCATGGTCCCCGCCCGC CCACCGTGGACGGCCAGCGGCAGCACATGGTCCCCGCCCGC < 41bp 0.363174892215295 0.706476327327582 0.025301993 0.14864054 prediction 0.412952654655164 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136405785 chr9:136405789 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_126482 0 0 0 0 2 ADAMTSL2 chr9:136405865 5'GT 136405865 Upstream 77bp
chr1 220752768 220752768 1 + C T BLCA 220752767 + 220752747 220752787 41 AGTAGCAGACAGAACATCCCCCGGTGTAGAAACTCCATTAC AGTAGCAGACAGAACATCCCCTGGTGTAGAAACTCCATTAC < 41bp 0.604298126844481 0.810773059373513 0.13173145 0.106825024 prediction 0.412949865058062 Functional Gain - MARK1 ENSG00000116141 CDS Human protein_coding chr1:220752767 chr1:220752768 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_126483 0 0 1 0 1 MARK1 chr1:220752696 3'AG 220752696 Downstream 73bp
chr15 80215427 80215427 1 - G C BLCA 80215431 - 80215411 80215451 41 GACGCCCCGGTGGCGGAGGACGTCCCGGAGGATCCCTCTGG GACGCCCCGGTGGCGGAGGACGTCGCGGAGGATCCCTCTGG < 41bp 0.427059646545052 0.706466711308435 0.5016373 0.73402596 prediction 0.412933422616869 Functional Gain - ST20-AS1 ENSG00000259642 CDS Human antisense chr15:80215431 chr15:80215427 synonymous SNV . 0 25 hm5C_associated_SNPs_126487 0 0 1 0 1 ST20-AS1 chr15:80215381 5'GT 80215381 Upstream 47bp
chr21 47539719 47539719 1 + C T BRCA 47539718 + 47539698 47539738 41 GCAGGGGCGCAGGGGAGACCCCGGCACCAAGGGCAGCCCAG GCAGGGGCGCAGGGGAGACCCTGGCACCAAGGGCAGCCCAG < 41bp 0.578827951287324 0.785289387631013 0.75650406 0.6433819 prediction 0.412922872687377 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47539718 chr21:47539719 synonymous SNV . 0 22 hm5C_associated_SNPs_126489 0 0 0 0 2 COL6A2 chr21:47539702 3'AG 47539702 Downstream 18bp
chr21 47539719 47539719 1 + C T BRCA 47539718 + 47539698 47539738 41 GCAGGGGCGCAGGGGAGACCCCGGCACCAAGGGCAGCCCAG GCAGGGGCGCAGGGGAGACCCTGGCACCAAGGGCAGCCCAG < 41bp 0.578827951287324 0.785289387631013 0.75650406 0.6433819 prediction 0.412922872687377 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47539718 chr21:47539719 synonymous SNV . 0 22 hm5C_associated_SNPs_126489 0 0 0 0 2 COL6A2 chr21:47539764 5'GT 47539764 Upstream 46bp
chr16 778886 778886 1 + C T UCEC 778885 + 778865 778905 41 CCACGTGAGAGCCAAGCTGTCCTGGGCTAAGGCACGGCCCC CCACGTGAGAGCCAAGCTGTCTTGGGCTAAGGCACGGCCCC < 41bp 0.559486903742551 0.765941911095248 0.5030324 0.38806617 prediction 0.412910014705395 Functional Gain - HAGHL ENSG00000103253 CDS Human protein_coding chr16:778885 chr16:778886 synonymous SNV . 0 22 hm5C_associated_SNPs_126490 0 0 1 0 1 HAGHL chr16:778794 3'AG 778794 Downstream 93bp
chr7 133041132 133041132 1 + C T SKCM 133041131 + 133041111 133041151 41 AGGAAGATTTAGAATTGGATCCAGAGGAAAACAGCACCCTG AGGAAGATTTAGAATTGGATCTAGAGGAAAACAGCACCCTG < 41bp 0.48525751584377 0.706452527422403 0.46932817 0.20316565 prediction 0.412905054844807 Functional Gain - EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133041131 chr7:133041132 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_126491 0 0 1 0 1 EXOC4 chr7:133041084 3'AG 133041084 Downstream 49bp
chrX 2795273 2795273 1 + C G rs199612015 2795272 + 2795252 2795292 41 TAAAGTCGAAAGTGTCTCATCCGAGGAAACCTTCGAACCAA TAAAGTCGAAAGTGTCTCATCGGAGGAAACCTTCGAACCAA < 41bp 0.381178826146492 0.70644779501262 0.88615716 0.9288257 prediction 0.41289559002524 Functional Gain - GYG2 ENSG00000056998 CDS Human protein_coding chrX:2795272 chrX:2795273 synonymous SNV . 0 22 hm5C_associated_SNPs_126493 0 0 0 0 3 GYG2 chrX:2795241 3'AG 2795241 Downstream 33bp
chrX 2795273 2795273 1 + C G rs199612015 2795272 + 2795252 2795292 41 TAAAGTCGAAAGTGTCTCATCCGAGGAAACCTTCGAACCAA TAAAGTCGAAAGTGTCTCATCGGAGGAAACCTTCGAACCAA < 41bp 0.381178826146492 0.70644779501262 0.88615716 0.9288257 prediction 0.41289559002524 Functional Gain - GYG2 ENSG00000056998 CDS Human protein_coding chrX:2795272 chrX:2795273 synonymous SNV . 0 22 hm5C_associated_SNPs_126493 0 0 0 0 3 GYG2 chrX:2795244 3'AG 2795244 Downstream 30bp
chrX 2795273 2795273 1 + C G rs199612015 2795272 + 2795252 2795292 41 TAAAGTCGAAAGTGTCTCATCCGAGGAAACCTTCGAACCAA TAAAGTCGAAAGTGTCTCATCGGAGGAAACCTTCGAACCAA < 41bp 0.381178826146492 0.70644779501262 0.88615716 0.9288257 prediction 0.41289559002524 Functional Gain - GYG2 ENSG00000056998 CDS Human protein_coding chrX:2795272 chrX:2795273 synonymous SNV . 0 22 hm5C_associated_SNPs_126493 0 0 0 0 3 GYG2 chrX:2795348 5'GT 2795348 Upstream 76bp
chr8 120430510 120430510 1 + C G OV 120430509 + 120430489 120430529 41 TGTGAAAAGTGGATCTGTGGCCCAGATGAGGAGGATTCACT TGTGAAAAGTGGATCTGTGGCGCAGATGAGGAGGATTCACT < 41bp 0.388302572737103 0.706445337587184 0.40153545 0.50823283 prediction 0.412890675174368 Functional Gain - NOV ENSG00000136999 CDS Human protein_coding chr8:120430509 chr8:120430510 nonsynonymous SNV 0.208 1 22 hm5C_associated_SNPs_126494 0 0 0 0 1 NOV chr8:120430549 5'GT 120430549 Upstream 40bp
chr8 133854799 133854799 1 + C T rs375619922 133854798 + 133854778 133854818 41 CCTTCATCTCTGGGCTTGTTCCGGGAAGCGAAAAGACCAAG CCTTCATCTCTGGGCTTGTTCTGGGAAGCGAAAAGACCAAG < 41bp 0.462763999643872 0.706439031216154 0.788773 0.1975556 prediction 0.412878062432308 Functional Gain - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133854798 chr8:133854799 synonymous SNV . 0 22 hm5C_associated_SNPs_126495 0 0 1 0 1 PHF20L1 chr8:133854760 3'AG 133854760 Downstream 40bp
chr2 135630073 135630073 1 + C A rs149347884 135630072 + 135630052 135630092 41 CTTCACAGTGGGAAGAATCTCCCATGGATTCAGCATGCGCC CTTCACAGTGGGAAGAATCTCACATGGATTCAGCATGCGCC < 41bp 0.431678195738151 0.70643854918186 0.049972832 0.07934672 prediction 0.412877098363721 Functional Gain - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135630072 chr2:135630073 synonymous SNV . 0 22 hm5C_associated_SNPs_126496 0 0 0 0 1 ACMSD chr2:135630039 3'AG 135630039 Downstream 35bp
chr16 2258560 2258560 1 + C A THCA 2258559 + 2258539 2258579 41 GGCAACCCCGGGGAGTCCTCCCGCGGCTGGATGTGGGGCTG GGCAACCCCGGGGAGTCCTCCAGCGGCTGGATGTGGGGCTG < 41bp 0.617650706992843 0.824085383406417 0.79617643 0.9073825 prediction 0.41286935282715 Functional Gain - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2258559 chr16:2258560 nonsynonymous SNV 0.166 1 22 hm5C_associated_SNPs_126499 0 0 1 0 1 MLST8 chr16:2258614 5'GT 2258614 Upstream 55bp
chrX 128878003 128878003 1 + C T LUSC 128878002 + 128877982 128878022 41 CTCCGCCAGCAGATGCAGACCCAGAATCTCTCAGCCTACAT CTCCGCCAGCAGATGCAGACCTAGAATCTCTCAGCCTACAT < 41bp 0.442190060064871 0.706422297827321 0.15363646 0.062558144 prediction 0.412844595654641 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128878002 chrX:128878003 stopgain 0.904 0 22 hm5C_associated_SNPs_126505 0 0 0 0 2 XPNPEP2 chrX:128877937 3'AG 128877937 Downstream 67bp
chrX 128878003 128878003 1 + C T LUSC 128878002 + 128877982 128878022 41 CTCCGCCAGCAGATGCAGACCCAGAATCTCTCAGCCTACAT CTCCGCCAGCAGATGCAGACCTAGAATCTCTCAGCCTACAT < 41bp 0.442190060064871 0.706422297827321 0.15363646 0.062558144 prediction 0.412844595654641 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128878002 chrX:128878003 stopgain 0.904 0 22 hm5C_associated_SNPs_126505 0 0 0 0 2 XPNPEP2 chrX:128878047 5'GT 128878047 Upstream 45bp
chr17 36638887 36638887 1 + C T COAD 36638886 + 36638866 36638906 41 AGCCTACAGGAGCAGCTCAACCGCGGGCCTGGTGACATCAA AGCCTACAGGAGCAGCTCAACTGCGGGCCTGGTGACATCAA < 41bp 0.443766036985256 0.706420681814465 0.15468416 0.11530802 prediction 0.41284136362893 Functional Gain - ARHGAP23 ENSG00000225485 CDS Human other chr17:36638886 chr17:36638887 nonsynonymous SNV 0.935 3 22 hm5C_associated_SNPs_126507 0 0 1 0 1 ARHGAP23 chr17:36638919 5'GT 36638919 Upstream 33bp
chr19 51981898 51981898 1 + T C UCEC 51981896 + 51981876 51981916 41 CTGGAGGACCCCAGGCAGCTCATGGACCTTTCCAGACCCAG CTGGAGGACCCCAGGCAGCTCACGGACCTTTCCAGACCCAG < 41bp 0.616580719136953 0.822998409355954 0.27046815 0.75347584 prediction 0.412835380438002 Functional Gain - CEACAM18 ENSG00000213822 CDS Human protein_coding chr19:51981896 chr19:51981898 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_126509 0 0 0 0 1 CEACAM18 chr19:51981948 5'GT 51981948 Upstream 51bp
chr2 73479815 73479815 1 + C A LUAD 73479811 + 73479791 73479831 41 CATCAACAACGAGGACATTGCTGACAACTTTGAAGCTTTCG CATCAACAACGAGGACATTGCTGAAAACTTTGAAGCTTTCG < 41bp 0.292375738666941 0.706417223693643 0.06692529 0.093254566 prediction 0.412834447387286 Functional Gain - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73479811 chr2:73479815 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_126510 0 0 1 0 1 CCT7 chr2:73479768 3'AG 73479768 Downstream 48bp
chr11 59860886 59860886 1 + T C BLCA 59860884 + 59860864 59860904 41 TATTATCAGGTGAGAGGAAGCCTGGGAGCAAACACTGCCAG TATTATCAGGTGAGAGGAAGCCCGGGAGCAAACACTGCCAG < 41bp 0.622614424553236 0.829030363995296 0.84689873 0.8922609 prediction 0.41283187888412 Functional Gain - MS4A2 ENSG00000149534 CDS Human protein_coding chr11:59860884 chr11:59860886 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_126513 0 0 0 0 1 MS4A2 chr11:59860873 3'AG 59860873 Downstream 14bp
chr17 7535242 7535242 1 + T C UCEC 7535240 + 7535220 7535260 41 CCCTGGGCCTTCTCTTTGGACCTGGGACTCAAGCAGGCAGC CCCTGGGCCTTCTCTTTGGACCCGGGACTCAAGCAGGCAGC < 41bp 0.473346490998034 0.706412167268926 0.29244792 0.4515009 prediction 0.412824334537853 Functional Gain - SHBG ENSG00000129214 CDS Human protein_coding chr17:7535240 chr17:7535242 nonsynonymous SNV 0.656 4 23 hm5C_associated_SNPs_126518 0 0 0 0 2 SHBG chr17:7535197 3'AG 7535197 Downstream 46bp
chr17 7535242 7535242 1 + T C UCEC 7535240 + 7535220 7535260 41 CCCTGGGCCTTCTCTTTGGACCTGGGACTCAAGCAGGCAGC CCCTGGGCCTTCTCTTTGGACCCGGGACTCAAGCAGGCAGC < 41bp 0.473346490998034 0.706412167268926 0.29244792 0.4515009 prediction 0.412824334537853 Functional Gain - SHBG ENSG00000129214 CDS Human protein_coding chr17:7535240 chr17:7535242 nonsynonymous SNV 0.656 4 23 hm5C_associated_SNPs_126518 0 0 0 0 2 SHBG chr17:7535333 5'GT 7535333 Upstream 92bp
chr16 231069 231069 1 + A G STAD 231066 + 231046 231086 41 AGGCGTCGCTGGACAAGTTCCTGAGCCACGTTATCTCGGCG AGGCGTCGCTGGACAAGTTCCTGGGCCACGTTATCTCGGCG < 41bp 0.606045407973575 0.812440244791797 0.33267486 0.5975524 prediction 0.412789673636443 Functional Gain - HBQ1 ENSG00000086506 CDS Human protein_coding chr16:231066 chr16:231069 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_126524 0 0 1 0 1 HBQ1 chr16:230979 3'AG 230979 Downstream 91bp
chr8 66992704 66992704 1 + C G rs78575551 66992703 + 66992683 66992723 41 CTGCTGTGGACACTGCCGGCCCGAGTCATCAGTGCCAGAAG CTGCTGTGGACACTGCCGGCCGGAGTCATCAGTGCCAGAAG < 41bp 0.378866755840873 0.706383985386949 0.028745115 0.7024827 prediction 0.412767970773898 Functional Gain - DNAJC5B ENSG00000147570 CDS Human protein_coding chr8:66992703 chr8:66992704 synonymous SNV . 0 22 hm5C_associated_SNPs_126526 0 0 0 0 2 DNAJC5B chr8:66992612 3'AG 66992612 Downstream 93bp
chr8 66992704 66992704 1 + C G rs78575551 66992703 + 66992683 66992723 41 CTGCTGTGGACACTGCCGGCCCGAGTCATCAGTGCCAGAAG CTGCTGTGGACACTGCCGGCCGGAGTCATCAGTGCCAGAAG < 41bp 0.378866755840873 0.706383985386949 0.028745115 0.7024827 prediction 0.412767970773898 Functional Gain - DNAJC5B ENSG00000147570 CDS Human protein_coding chr8:66992703 chr8:66992704 synonymous SNV . 0 22 hm5C_associated_SNPs_126526 0 0 0 0 2 DNAJC5B chr8:66992783 5'GT 66992783 Upstream 80bp
chr5 180432415 180432415 1 + C T UCEC 180432414 + 180432394 180432434 41 CTGTAACCCATAGAAAAGCTCCCCAGGAGGTGCCTCACTCT CTGTAACCCATAGAAAAGCTCTCCAGGAGGTGCCTCACTCT < 41bp 0.440461287403481 0.706382215405418 0.15533647 0.92418087 prediction 0.412764430810837 Functional Gain - BTNL3 ENSG00000168903 CDS Human protein_coding chr5:180432414 chr5:180432415 nonsynonymous SNV 0.006 3 22 hm5C_associated_SNPs_126528 0 0 0 0 1 BTNL3 chr5:180432334 3'AG 180432334 Downstream 82bp
chr8 68031034 68031034 1 + C A THCA 68031030 + 68031010 68031050 41 GCTTATGTTAGTGCTCCTGTCACCCACCAACTAGCACAACC GCTTATGTTAGTGCTCCTGTCACCAACCAACTAGCACAACC < 41bp 0.282941457132344 0.706380212820632 0.08321953 0.23631603 prediction 0.412760425641264 Functional Gain - CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68031030 chr8:68031034 nonsynonymous SNV 0.121 0 25 hm5C_associated_SNPs_126530 0 0 1 0 2 CSPP1 chr8:68030978 3'AG 68030978 Downstream 57bp
chr8 68031034 68031034 1 + C A THCA 68031030 + 68031010 68031050 41 GCTTATGTTAGTGCTCCTGTCACCCACCAACTAGCACAACC GCTTATGTTAGTGCTCCTGTCACCAACCAACTAGCACAACC < 41bp 0.282941457132344 0.706380212820632 0.08321953 0.23631603 prediction 0.412760425641264 Functional Gain - CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68031030 chr8:68031034 nonsynonymous SNV 0.121 0 25 hm5C_associated_SNPs_126530 0 0 1 0 2 CSPP1 chr8:68031056 5'GT 68031056 Upstream 23bp
chr2 54023133 54023133 1 + A G rs192316706 54023130 + 54023110 54023150 41 TTTTGGAGCCACTATTTAAACAAAGCAGTTGTTCCTACAGA TTTTGGAGCCACTATTTAAACAAGGCAGTTGTTCCTACAGA < 41bp 0.583573738892011 0.789953703221335 0.26301903 0.8685697 prediction 0.412759928658647 Functional Gain - ERLEC1 ENSG00000068912 CDS Human protein_coding chr2:54023130 chr2:54023133 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_126531 0 0 1 0 1 ERLEC1 chr2:54023070 3'AG 54023070 Downstream 64bp
chr4 110737493 110737493 1 + T G STAD 110737491 + 110737471 110737511 41 CGAGGGGGTGGCCGCGGAGGCTTTAACAAAGGCCAAGACCA CGAGGGGGTGGCCGCGGAGGCTGTAACAAAGGCCAAGACCA < 41bp 0.398114604739352 0.706379483797297 0.16646644 0.42739016 prediction 0.412758967594594 Functional Gain - GAR1 ENSG00000109534 CDS Human protein_coding chr4:110737491 chr4:110737493 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_126532 0 0 1 0 1 GAR1 chr4:110737534 5'GT 110737534 Upstream 42bp
chr6 158294193 158294193 1 + C T rs539593311 158294192 + 158294172 158294212 41 AGGAGAACGAGGGCTGGTTCCCACAGACTACGTTGAAGTAA AGGAGAACGAGGGCTGGTTCCTACAGACTACGTTGAAGTAA < 41bp 0.640840889395263 0.84721863498864 0.30876917 0.46435112 prediction 0.412755491186755 Functional Gain - SNX9 ENSG00000130340 CDS Human protein_coding chr6:158294192 chr6:158294193 synonymous SNV . 0 22 hm5C_associated_SNPs_126533 0 0 1 0 2 SNX9 chr6:158294134 3'AG 158294134 Downstream 60bp
chr6 158294193 158294193 1 + C T rs539593311 158294192 + 158294172 158294212 41 AGGAGAACGAGGGCTGGTTCCCACAGACTACGTTGAAGTAA AGGAGAACGAGGGCTGGTTCCTACAGACTACGTTGAAGTAA < 41bp 0.640840889395263 0.84721863498864 0.30876917 0.46435112 prediction 0.412755491186755 Functional Gain - SNX9 ENSG00000130340 CDS Human protein_coding chr6:158294192 chr6:158294193 synonymous SNV . 0 22 hm5C_associated_SNPs_126533 0 0 1 0 2 SNX9 chr6:158294208 5'GT 158294208 Upstream 16bp
chr4 3445869 3445869 1 + C T CESC 3445868 + 3445848 3445888 41 CAGCTGCCCCCGGGCCTTCACCGGCAAGGACTGCGGCACAG CAGCTGCCCCCGGGCCTTCACTGGCAAGGACTGCGGCACAG < 41bp 0.571079256374742 0.777452642826498 0.7549942 0.43155736 prediction 0.412746772903511 Functional Gain - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3445868 chr4:3445869 synonymous SNV . 0 22 hm5C_associated_SNPs_126536 0 0 1 0 1 HGFAC chr4:3445888 5'GT 3445888 Upstream 20bp
chr9 82267551 82267551 1 + C T SKCM 82267550 + 82267530 82267570 41 TATCACATGGACATGGTCTCCCCGTACCTCTGACTCCACAC TATCACATGGACATGGTCTCCTCGTACCTCTGACTCCACAC < 41bp 0.491873143414578 0.706370736753752 0.1168232 0.12438151 prediction 0.412741473507503 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82267550 chr9:82267551 nonsynonymous SNV 0.561 2 22 hm5C_associated_SNPs_126537 0 0 1 0 2 TLE4 chr9:82267505 3'AG 82267505 Downstream 47bp
chr9 82267551 82267551 1 + C T SKCM 82267550 + 82267530 82267570 41 TATCACATGGACATGGTCTCCCCGTACCTCTGACTCCACAC TATCACATGGACATGGTCTCCTCGTACCTCTGACTCCACAC < 41bp 0.491873143414578 0.706370736753752 0.1168232 0.12438151 prediction 0.412741473507503 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82267550 chr9:82267551 nonsynonymous SNV 0.561 2 22 hm5C_associated_SNPs_126537 0 0 1 0 2 TLE4 chr9:82267508 3'AG 82267508 Downstream 44bp
chr17 47241524 47241524 1 + C A COAD 47241523 + 47241503 47241543 41 CACAAGCTCATGATCATGCTCCGGAGTATTCGAGAGTATTA CACAAGCTCATGATCATGCTCAGGAGTATTCGAGAGTATTA < 41bp 0.647181155619555 0.85355063735163 0.91506666 0.9401165 prediction 0.412738963464149 Functional Gain - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47241523 chr17:47241524 synonymous SNV . 0 22 hm5C_associated_SNPs_126539 0 0 0 0 1 B4GALNT2 chr17:47241450 3'AG 47241450 Downstream 75bp
chr2 27167548 27167548 1 + C T UCEC 27167547 + 27167527 27167567 41 TTAAAGGTTAGAGGAGTGGACCGCACTCCCTACCTGGGGGA TTAAAGGTTAGAGGAGTGGACTGCACTCCCTACCTGGGGGA < 41bp 0.446112431998845 0.706367494637951 0.13102543 0.25858974 prediction 0.412734989275902 Functional Gain - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27167547 chr2:27167548 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_126540 0 0 1 0 1 DPYSL5 chr2:27167524 3'AG 27167524 Downstream 25bp
chr2 98349354 98349354 1 + C T LUSC 98349353 + 98349333 98349373 41 CTTCCCCTGCCAGGCTGAGGCCGCGGAAGGAGCAGGGCACA CTTCCCCTGCCAGGCTGAGGCTGCGGAAGGAGCAGGGCACA < 41bp 0.594093738928678 0.800457494787398 0.8428037 0.88057053 prediction 0.412727511717439 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98349353 chr2:98349354 nonsynonymous SNV 0.983 2 22 hm5C_associated_SNPs_126542 0 0 0 0 1 ZAP70 chr2:98349346 3'AG 98349346 Downstream 9bp
chr22 32211139 32211139 1 + C G LUSC 32211138 + 32211118 32211158 41 GTGCCAACATCCTGATGATCCCACACCCCCACCTGCACCAG GTGCCAACATCCTGATGATCCGACACCCCCACCTGCACCAG < 41bp 0.406250231529655 0.706357759081736 0.07983637 0.14979914 prediction 0.412715518163472 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32211138 chr22:32211139 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_126544 0 0 0 0 1 DEPDC5 chr22:32211198 5'GT 32211198 Upstream 60bp
chr6 44195073 44195073 1 + A G ESCA 44195070 + 44195050 44195090 41 CATGACAACCAGTCACCAGCCTCAGGACAGGTAAGGGGTAA CATGACAACCAGTCACCAGCCTCGGGACAGGTAAGGGGTAA < 41bp 0.482008157427878 0.706351998454152 0.061300874 0.050014764 prediction 0.412703996908304 Functional Gain - SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44195070 chr6:44195073 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_126546 0 0 1 0 3 SLC29A1 chr6:44194997 3'AG 44194997 Downstream 77bp
chr6 44195073 44195073 1 + A G ESCA 44195070 + 44195050 44195090 41 CATGACAACCAGTCACCAGCCTCAGGACAGGTAAGGGGTAA CATGACAACCAGTCACCAGCCTCGGGACAGGTAAGGGGTAA < 41bp 0.482008157427878 0.706351998454152 0.061300874 0.050014764 prediction 0.412703996908304 Functional Gain - SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44195070 chr6:44195073 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_126546 0 0 1 0 3 SLC29A1 chr6:44195000 3'AG 44195000 Downstream 74bp
chr6 44195073 44195073 1 + A G ESCA 44195070 + 44195050 44195090 41 CATGACAACCAGTCACCAGCCTCAGGACAGGTAAGGGGTAA CATGACAACCAGTCACCAGCCTCGGGACAGGTAAGGGGTAA < 41bp 0.482008157427878 0.706351998454152 0.061300874 0.050014764 prediction 0.412703996908304 Functional Gain - SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44195070 chr6:44195073 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_126546 0 0 1 0 3 SLC29A1 chr6:44195079 5'GT 44195079 Upstream 7bp
chr10 102822842 102822842 1 + C A LUAD 102822841 + 102822821 102822861 41 GCCAACCTCACTGTGGCACACCCGGGGCCCTGCGAATCGGG GCCAACCTCACTGTGGCACACACGGGGCCCTGCGAATCGGG < 41bp 0.634494579601042 0.840840238627877 0.32874876 0.21943334 prediction 0.41269131805367 Functional Gain - KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102822841 chr10:102822842 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_126547 0 0 0 0 1 KAZALD1 chr10:102822860 5'GT 102822860 Upstream 19bp
chr19 46260499 46260499 1 + T A rs542476933 46260497 + 46260477 46260517 41 AGGGTCCCTAGACGCTGACCCTTGGCTCCCTGCCTGGACCC AGGGTCCCTAGACGCTGACCCTAGGCTCCCTGCCTGGACCC < 41bp 0.495212338684162 0.70632131340648 0.15988222 0.80567443 prediction 0.412642626812961 Functional Gain - BHMG1 ENSG00000237452 CDS Human protein_coding chr19:46260497 chr19:46260499 nonsynonymous SNV 0.954 2 23 hm5C_associated_SNPs_126554 0 0 0 0 2 BHMG1 chr19:46260435 3'AG 46260435 Downstream 65bp
chr19 46260499 46260499 1 + T A rs542476933 46260497 + 46260477 46260517 41 AGGGTCCCTAGACGCTGACCCTTGGCTCCCTGCCTGGACCC AGGGTCCCTAGACGCTGACCCTAGGCTCCCTGCCTGGACCC < 41bp 0.495212338684162 0.70632131340648 0.15988222 0.80567443 prediction 0.412642626812961 Functional Gain - BHMG1 ENSG00000237452 CDS Human protein_coding chr19:46260497 chr19:46260499 nonsynonymous SNV 0.954 2 23 hm5C_associated_SNPs_126554 0 0 0 0 2 BHMG1 chr19:46260535 5'GT 46260535 Upstream 37bp
chr5 145838817 145838817 1 + T C HNSC 145838814 + 145838794 145838834 41 GACCAGTAGCCCAGCACCTGCAGTATCCACTTCAACATCAT GACCAGTAGCCCAGCACCTGCAGCATCCACTTCAACATCAT < 41bp 0.524869513306162 0.731188312486677 0.13107413 0.14403877 prediction 0.41263759836103 Functional Gain - TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145838814 chr5:145838817 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_126555 0 0 1 0 1 TCERG1 chr5:145838900 5'GT 145838900 Upstream 84bp
chr6 20481524 20481524 1 + C T UCEC 20481523 + 20481503 20481543 41 TTCAGCTCCTGAGCCAGTCACCCGATGGGGTATTGGATTTG TTCAGCTCCTGAGCCAGTCACTCGATGGGGTATTGGATTTG < 41bp 0.654689315946558 0.86100784572646 0.27132323 0.8634311 prediction 0.412637059559804 Functional Gain - E2F3 ENSG00000112242 CDS Human protein_coding chr6:20481523 chr6:20481524 nonsynonymous SNV 0.968 2 22 hm5C_associated_SNPs_126556 0 0 1 0 2 E2F3 chr6:20481437 3'AG 20481437 Downstream 88bp
chr6 20481524 20481524 1 + C T UCEC 20481523 + 20481503 20481543 41 TTCAGCTCCTGAGCCAGTCACCCGATGGGGTATTGGATTTG TTCAGCTCCTGAGCCAGTCACTCGATGGGGTATTGGATTTG < 41bp 0.654689315946558 0.86100784572646 0.27132323 0.8634311 prediction 0.412637059559804 Functional Gain - E2F3 ENSG00000112242 CDS Human protein_coding chr6:20481523 chr6:20481524 nonsynonymous SNV 0.968 2 22 hm5C_associated_SNPs_126556 0 0 1 0 2 E2F3 chr6:20481455 3'AG 20481455 Downstream 70bp
chr1 16091636 16091636 1 + A G UCEC 16091633 + 16091613 16091653 41 TCCTGCCCCCATGAAGACACCCGAGGCTGGCTTGGCGGGGA TCCTGCCCCCATGAAGACACCCGGGGCTGGCTTGGCGGGGA < 41bp 0.61922130039778 0.82553532111888 0.68590397 0.9200786 prediction 0.412628041442201 Functional Gain - FBLIM1 ENSG00000162458 CDS Human protein_coding chr1:16091633 chr1:16091636 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_126557 0 0 1 0 1 FBLIM1 chr1:16091728 5'GT 16091728 Upstream 93bp
chr18 43204711 43204711 1 + C A HNSC 43204710 + 43204690 43204730 41 TACGAGGCAGAGTTTACCAGCCCGAGCTGGCCCTCGACATC TACGAGGCAGAGTTTACCAGCACGAGCTGGCCCTCGACATC < 41bp 0.622045712622732 0.828349911488169 0.22745246 0.42193842 prediction 0.412608397730875 Functional Gain - SLC14A2 ENSG00000132874 CDS Human protein_coding chr18:43204710 chr18:43204711 nonsynonymous SNV 0.037 0 22 hm5C_associated_SNPs_126558 0 0 0 0 1 SLC14A2 chr18:43204779 5'GT 43204779 Upstream 69bp
chr17 66098079 66098079 1 + C A rs373367557 66098075 + 66098055 66098095 41 AACCTCGGAGGCCGTAGGAACGGGCCTGTCGAAGTGCGCCT AACCTCGGAGGCCGTAGGAACGGGACTGTCGAAGTGCGCCT < 41bp 0.717185343231628 0.923485346501901 0.9068217 0.90942544 prediction 0.412600006540546 Functional Gain - LINC00674 ENSG00000237854 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:66098075 chr17:66098079 . . 0 25 hm5C_associated_SNPs_126561 0 0 0 0 1 LINC00674 chr17:66098100 5'GT 66098100 Upstream 22bp
chr12 49666121 49666121 1 + T C GBM 49666119 + 49666099 49666139 41 TCTGGGTTCACCTCGCTGCTCATGGAACGTCTCTCAGTTGA TCTGGGTTCACCTCGCTGCTCACGGAACGTCTCTCAGTTGA < 41bp 0.646373599025875 0.852666548408188 0.26731342 0.20730826 prediction 0.412585898764626 Functional Gain - TUBA1C ENSG00000167553 CDS Human protein_coding chr12:49666119 chr12:49666121 nonsynonymous SNV 0.981 3 23 hm5C_associated_SNPs_126563 0 0 1 0 1 TUBA1C chr12:49666036 3'AG 49666036 Downstream 86bp
chr7 139717487 139717487 1 + C T COAD 139717486 + 139717466 139717506 41 TGCAGGTTCACGGCTGAGGCCCGGCAGCAGCACCGGCCCTT TGCAGGTTCACGGCTGAGGCCTGGCAGCAGCACCGGCCCTT < 41bp 0.477214372994532 0.706288051856111 0.6708703 0.60815006 prediction 0.412576103712221 Functional Gain - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139717486 chr7:139717487 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_126568 0 0 0 0 1 TBXAS1 chr7:139717471 3'AG 139717471 Downstream 17bp
chr5 423970 423970 1 + C T SKCM 423969 + 423949 423989 41 TCTGCAGGAGATGATGCTATCCTGGGGAGGCTGCTCAGGGC TCTGCAGGAGATGATGCTATCTTGGGGAGGCTGCTCAGGGC < 41bp 0.610912129960325 0.817199422345524 0.8974451 0.8302125 prediction 0.412574584770397 Functional Gain - AHRR ENSG00000063438 CDS Human protein_coding chr5:423969 chr5:423970 synonymous SNV . 0 22 hm5C_associated_SNPs_126569 0 0 1 0 1 AHRR chr5:423956 3'AG 423956 Downstream 15bp
chr4 103527815 103527815 1 + A G UCEC 103527812 + 103527792 103527832 41 TTCTCAGTATCTTACTCAAGCACAAAAAGGCAGCACTACTT TTCTCAGTATCTTACTCAAGCACGAAAAGGCAGCACTACTT < 41bp 0.465780170297534 0.706285869271783 0.018977612 0.026872575 prediction 0.412571738543566 Functional Gain - NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103527812 chr4:103527815 nonsynonymous SNV 0.989 0 24 hm5C_associated_SNPs_126570 0 0 0 0 1 NFKB1 chr4:103527854 5'GT 103527854 Upstream 40bp
chr20 44642095 44642095 1 + C T ESCA 44642094 + 44642074 44642114 41 CCACTACTGTGCCTTTGAGTCCGGTGGACGATGCCTGCAAC CCACTACTGTGCCTTTGAGTCTGGTGGACGATGCCTGCAAC < 41bp 0.614132313214642 0.820415539613418 0.8698955 0.72202075 prediction 0.412566452797552 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44642094 chr20:44642095 nonsynonymous SNV 0.015 4 22 hm5C_associated_SNPs_126572 0 0 0 0 1 MMP9 chr20:44642173 5'GT 44642173 Upstream 79bp
chr21 47660785 47660785 1 + T A HNSC 47660783 + 47660763 47660803 41 CAAACACTGCGCCAAGAGCTCCTCAGCAGAAGCTCCTCGCA CAAACACTGCGCCAAGAGCTCCACAGCAGAAGCTCCTCGCA < 41bp 0.495769624696701 0.706281964955803 0.118138015 0.0797762 prediction 0.412563929911606 Functional Gain - MCM3AP ENSG00000160294 CDS Human protein_coding chr21:47660783 chr21:47660785 nonsynonymous SNV 0.119 0 23 hm5C_associated_SNPs_126573 0 0 1 4 1 MCM3AP chr21:47660748 3'AG 47660748 Downstream 38bp
chr1 186925434 186925434 1 + C A rs150610130 186925430 + 186925410 186925450 41 TCTCCTTTGAGTGACTTTGCCACACAGGACTCCTTTGATGA TCTCCTTTGAGTGACTTTGCCACAAAGGACTCCTTTGATGA < 41bp 0.287563720664166 0.706267091681919 0.14801812 0.10322812 prediction 0.412534183363839 Functional Gain - PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186925430 chr1:186925434 nonsynonymous SNV 0.387 1 25 hm5C_associated_SNPs_126580 0 0 1 0 1 PLA2G4A chr1:186925476 5'GT 186925476 Upstream 43bp
chr8 95862296 95862296 1 + T C STAD 95862293 + 95862273 95862313 41 AGTAAATCTGTGCATTAAACCTGTAACTTCATTTTATGATA AGTAAATCTGTGCATTAAACCTGCAACTTCATTTTATGATA < 41bp 0.552821813814731 0.759085010946251 0.022672117 0.04760593 prediction 0.412526394263039 Functional Gain - INTS8 ENSG00000164941 CDS Human protein_coding chr8:95862293 chr8:95862296 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_126582 0 0 1 0 1 INTS8 chr8:95862319 5'GT 95862319 Upstream 24bp
chr19 56181020 56181020 1 + C T LGG 56181019 + 56180999 56181039 41 GTCAAGTCCATCGAGATCCCCCGGCCTGTGGACGGCGTCGA GTCAAGTCCATCGAGATCCCCTGGCCTGTGGACGGCGTCGA < 41bp 0.468929374868214 0.706258124822246 0.23926634 0.14923775 prediction 0.412516249644492 Functional Gain - U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56181019 chr19:56181020 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_126585 0 0 1 0 1 U2AF2 chr19:56181058 5'GT 56181058 Upstream 39bp
chr17 73486331 73486331 1 + C A STAD 73486327 + 73486307 73486347 41 CTTCCCAGGTGAATGGCGTCCTGCCCATCCTCCCCCTGCTC CTTCCCAGGTGAATGGCGTCCTGCACATCCTCCCCCTGCTC < 41bp 0.285805894868308 0.706252242655841 0.22067192 0.18584865 prediction 0.412504485311681 Functional Gain - TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73486327 chr17:73486331 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_126586 0 0 1 0 1 TMEM94 chr17:73486315 3'AG 73486315 Downstream 17bp
chr4 42072612 42072612 1 + T A KIRP 42072610 + 42072590 42072630 41 TTAGGCATGGTCTCAGCATTCCTCATCTACACTAACACAGA TTAGGCATGGTCTCAGCATTCCACATCTACACTAACACAGA < 41bp 0.498203899027492 0.706247899391358 0.12447953 0.08872059 prediction 0.412495798782716 Functional Gain - SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42072610 chr4:42072612 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_126587 0 0 1 0 2 SLC30A9 chr4:42072543 3'AG 42072543 Downstream 70bp
chr4 42072612 42072612 1 + T A KIRP 42072610 + 42072590 42072630 41 TTAGGCATGGTCTCAGCATTCCTCATCTACACTAACACAGA TTAGGCATGGTCTCAGCATTCCACATCTACACTAACACAGA < 41bp 0.498203899027492 0.706247899391358 0.12447953 0.08872059 prediction 0.412495798782716 Functional Gain - SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42072610 chr4:42072612 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_126587 0 0 1 0 2 SLC30A9 chr4:42072708 5'GT 42072708 Upstream 97bp
chr6 43268991 43268991 1 + C A LUAD 43268987 + 43268967 43269007 41 CCAGTGTGTGAGGACAGCTTCAGCCAGGAGGTGAGGGTGAA CCAGTGTGTGAGGACAGCTTCAGCAAGGAGGTGAGGGTGAA < 41bp 0.282394988706304 0.706242925576638 0.10217103 0.23522094 prediction 0.412485851153276 Functional Gain - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43268987 chr6:43268991 nonsynonymous SNV 0.991 0 25 hm5C_associated_SNPs_126588 0 0 0 0 1 SLC22A7 chr6:43268996 5'GT 43268996 Upstream 6bp
chr11 6292692 6292692 1 + C T UCEC 6292691 + 6292671 6292711 41 AGCTCGCCCCAGGGCTCTTCCCGATGAGGACCCTCCCACTC AGCTCGCCCCAGGGCTCTTCCTGATGAGGACCCTCCCACTC < 41bp 0.604264552247892 0.810507325836717 0.49422476 0.42227116 prediction 0.41248554717765 Functional Gain - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6292691 chr11:6292692 synonymous SNV . 0 22 hm5C_associated_SNPs_126589 0 0 0 0 1 CCKBR chr11:6292627 3'AG 6292627 Downstream 66bp
chrX 105879794 105879794 1 + A G UCEC 105879791 + 105879771 105879811 41 AGTGGCATATTTTGTGTGTACACAGTTGAAAGTTGTCAGAA AGTGGCATATTTTGTGTGTACACGGTTGAAAGTTGTCAGAA < 41bp 0.589174491524147 0.795410638284353 0.0381518 0.10259101 prediction 0.412472293520412 Functional Gain - CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105879791 chrX:105879794 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_126592 0 0 0 0 2 CXorf57 chrX:105879773 3'AG 105879773 Downstream 22bp
chrX 105879794 105879794 1 + A G UCEC 105879791 + 105879771 105879811 41 AGTGGCATATTTTGTGTGTACACAGTTGAAAGTTGTCAGAA AGTGGCATATTTTGTGTGTACACGGTTGAAAGTTGTCAGAA < 41bp 0.589174491524147 0.795410638284353 0.0381518 0.10259101 prediction 0.412472293520412 Functional Gain - CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105879791 chrX:105879794 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_126592 0 0 0 0 2 CXorf57 chrX:105879877 5'GT 105879877 Upstream 84bp
chr13 31318261 31318261 1 + C T CESC 31318260 + 31318240 31318280 41 TGGGAGGAGCTTCCAGAGGACCGGAACACTTGCCTTTGAGC TGGGAGGAGCTTCCAGAGGACTGGAACACTTGCCTTTGAGC < 41bp 0.630958714528827 0.83718876576338 0.89276767 0.84144926 prediction 0.412460102469105 Functional Gain - ALOX5AP ENSG00000132965 CDS Human protein_coding chr13:31318260 chr13:31318261 synonymous SNV . 0 22 hm5C_associated_SNPs_126596 0 0 0 0 2 ALOX5AP chr13:31318197 3'AG 31318197 Downstream 65bp
chr13 31318261 31318261 1 + C T CESC 31318260 + 31318240 31318280 41 TGGGAGGAGCTTCCAGAGGACCGGAACACTTGCCTTTGAGC TGGGAGGAGCTTCCAGAGGACTGGAACACTTGCCTTTGAGC < 41bp 0.630958714528827 0.83718876576338 0.89276767 0.84144926 prediction 0.412460102469105 Functional Gain - ALOX5AP ENSG00000132965 CDS Human protein_coding chr13:31318260 chr13:31318261 synonymous SNV . 0 22 hm5C_associated_SNPs_126596 0 0 0 0 2 ALOX5AP chr13:31318296 5'GT 31318296 Upstream 36bp
chr2 233272055 233272055 1 + C A UCEC 233272051 + 233272031 233272071 41 CTAAAAGGGCAGAAGAAGGACAAACTGGGGCCTGAGACCTT CTAAAAGGGCAGAAGAAGGACAAAATGGGGCCTGAGACCTT < 41bp 0.286694425785657 0.706228852776057 0.4034915 0.84113073 prediction 0.412457705552114 Functional Gain - ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233272051 chr2:233272055 nonsynonymous SNV 0.018 2 25 hm5C_associated_SNPs_126599 0 0 0 0 2 ALPPL2 chr2:233271996 3'AG 233271996 Downstream 60bp
chr2 233272055 233272055 1 + C A UCEC 233272051 + 233272031 233272071 41 CTAAAAGGGCAGAAGAAGGACAAACTGGGGCCTGAGACCTT CTAAAAGGGCAGAAGAAGGACAAAATGGGGCCTGAGACCTT < 41bp 0.286694425785657 0.706228852776057 0.4034915 0.84113073 prediction 0.412457705552114 Functional Gain - ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233272051 chr2:233272055 nonsynonymous SNV 0.018 2 25 hm5C_associated_SNPs_126599 0 0 0 0 2 ALPPL2 chr2:233272111 5'GT 233272111 Upstream 57bp
chr1 207317316 207317316 1 + C A COAD 207317315 + 207317295 207317335 41 CTGGGAACAGAACCTGGTACCCAGAGGTGCCCAAGTGTGAG CTGGGAACAGAACCTGGTACCAAGAGGTGCCCAAGTGTGAG < 41bp 0.637968428956806 0.844195655879128 0.862807 0.87888086 prediction 0.412454453844644 Functional Gain - C4BPA ENSG00000123838 CDS Human protein_coding chr1:207317315 chr1:207317316 nonsynonymous SNV 0.650 4 22 hm5C_associated_SNPs_126600 0 0 1 0 1 C4BPA chr1:207317338 5'GT 207317338 Upstream 23bp
chr3 17056366 17056366 1 + C T LUAD 17056365 + 17056345 17056385 41 TGGAGCTGCAGGGAATTGTGCCGGAGGTTCTGAAGAAGATC TGGAGCTGCAGGGAATTGTGCTGGAGGTTCTGAAGAAGATC < 41bp 0.451562634881608 0.706226688094872 0.24889782 0.0804432 prediction 0.412453376189744 Functional Gain - PLCL2 ENSG00000154822 CDS Human protein_coding chr3:17056365 chr3:17056366 nonsynonymous SNV 0.489 3 22 hm5C_associated_SNPs_126601 0 0 1 0 1 PLCL2 chr3:17056403 5'GT 17056403 Upstream 38bp
chr2 135620989 135620989 1 + C A UCEC 135620988 + 135620968 135621008 41 AAACCTGAGGACACTTTAAACCTGTGCCAGCTTTTAAACAA AAACCTGAGGACACTTTAAACATGTGCCAGCTTTTAAACAA < 41bp 0.437309848053555 0.70622467048889 0.14321956 0.1083405 prediction 0.412449340977781 Functional Gain - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135620988 chr2:135620989 nonsynonymous SNV 0.916 1 22 hm5C_associated_SNPs_126602 0 0 0 0 1 ACMSD chr2:135620965 3'AG 135620965 Downstream 25bp
chr3 42684054 42684054 1 + C T PRAD 42684053 + 42684033 42684073 41 AGCAGAGGCCGAACCAGAAGCCGGAGCAGTTCCTACCGGAG AGCAGAGGCCGAACCAGAAGCTGGAGCAGTTCCTACCGGAG < 41bp 0.607405064626888 0.813629328974436 0.47116128 0.37942004 prediction 0.412448528695096 Functional Gain - NKTR ENSG00000114857 CDS Human protein_coding chr3:42684053 chr3:42684054 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_126603 0 0 1 0 2 NKTR chr3:42683993 3'AG 42683993 Downstream 62bp
chr3 42684054 42684054 1 + C T PRAD 42684053 + 42684033 42684073 41 AGCAGAGGCCGAACCAGAAGCCGGAGCAGTTCCTACCGGAG AGCAGAGGCCGAACCAGAAGCTGGAGCAGTTCCTACCGGAG < 41bp 0.607405064626888 0.813629328974436 0.47116128 0.37942004 prediction 0.412448528695096 Functional Gain - NKTR ENSG00000114857 CDS Human protein_coding chr3:42684053 chr3:42684054 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_126603 0 0 1 0 2 NKTR chr3:42684088 5'GT 42684088 Upstream 35bp
chr7 156754903 156754903 1 + C T SKCM 156754902 + 156754882 156754922 41 ACAATGACATGCGCAAAATTCCAGGCTATGACCCCGAGCCC ACAATGACATGCGCAAAATTCTAGGCTATGACCCCGAGCCC < 41bp 0.625621861387525 0.831841427111808 0.893415 0.85160017 prediction 0.412439131448566 Functional Gain - NOM1 ENSG00000146909 CDS Human protein_coding chr7:156754902 chr7:156754903 nonsynonymous SNV 0.274 2 22 hm5C_associated_SNPs_126605 0 0 1 0 2 NOM1 chr7:156754845 3'AG 156754845 Downstream 59bp
chr7 156754903 156754903 1 + C T SKCM 156754902 + 156754882 156754922 41 ACAATGACATGCGCAAAATTCCAGGCTATGACCCCGAGCCC ACAATGACATGCGCAAAATTCTAGGCTATGACCCCGAGCCC < 41bp 0.625621861387525 0.831841427111808 0.893415 0.85160017 prediction 0.412439131448566 Functional Gain - NOM1 ENSG00000146909 CDS Human protein_coding chr7:156754902 chr7:156754903 nonsynonymous SNV 0.274 2 22 hm5C_associated_SNPs_126605 0 0 1 0 2 NOM1 chr7:156754955 5'GT 156754955 Upstream 53bp
chrX 102841646 102841646 1 + C A GBM 102841645 + 102841625 102841665 41 AATGAAGGAATGGCTTCAAACCAAGGAAAGATGGAAAATGA AATGAAGGAATGGCTTCAAACAAAGGAAAGATGGAAAATGA < 41bp 0.445611335587026 0.706219512973989 0.7289097 0.8932664 prediction 0.412439025947979 Functional Gain - TCEAL4 ENSG00000133142 CDS Human protein_coding chrX:102841645 chrX:102841646 nonsynonymous SNV 0.008 0 22 hm5C_associated_SNPs_126606 0 0 1 0 2 TCEAL4 chrX:102841577 3'AG 102841577 Downstream 70bp
chrX 102841646 102841646 1 + C A GBM 102841645 + 102841625 102841665 41 AATGAAGGAATGGCTTCAAACCAAGGAAAGATGGAAAATGA AATGAAGGAATGGCTTCAAACAAAGGAAAGATGGAAAATGA < 41bp 0.445611335587026 0.706219512973989 0.7289097 0.8932664 prediction 0.412439025947979 Functional Gain - TCEAL4 ENSG00000133142 CDS Human protein_coding chrX:102841645 chrX:102841646 nonsynonymous SNV 0.008 0 22 hm5C_associated_SNPs_126606 0 0 1 0 2 TCEAL4 chrX:102841582 3'AG 102841582 Downstream 65bp
chr21 44189236 44189236 1 + C A GBM 44189235 + 44189215 44189255 41 ATTGGGTTCATCAAGTTTGTCCTGATCCCAATGTTTGAAAC ATTGGGTTCATCAAGTTTGTCATGATCCCAATGTTTGAAAC < 41bp 0.550545688358972 0.756764308630635 0.17307213 0.22774106 prediction 0.412437240543327 Functional Gain - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44189235 chr21:44189236 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_126608 0 0 0 0 2 PDE9A chr21:44189137 3'AG 44189137 Downstream 100bp
chr21 44189236 44189236 1 + C A GBM 44189235 + 44189215 44189255 41 ATTGGGTTCATCAAGTTTGTCCTGATCCCAATGTTTGAAAC ATTGGGTTCATCAAGTTTGTCATGATCCCAATGTTTGAAAC < 41bp 0.550545688358972 0.756764308630635 0.17307213 0.22774106 prediction 0.412437240543327 Functional Gain - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44189235 chr21:44189236 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_126608 0 0 0 0 2 PDE9A chr21:44189265 5'GT 44189265 Upstream 30bp
chr19 44514520 44514520 1 + T C UCEC 44514518 + 44514498 44514538 41 TTAACCCAGTCTCAAGACTCCATCATAAATAATTCTCACTT TTAACCCAGTCTCAAGACTCCACCATAAATAATTCTCACTT < 41bp 0.444175187584776 0.706210438852959 0.028115511 0.047192216 prediction 0.412420877705918 Functional Gain - ZNF230 ENSG00000159882 CDS Human protein_coding chr19:44514518 chr19:44514520 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_126611 0 0 1 0 1 ZNF230 chr19:44514421 3'AG 44514421 Downstream 100bp
chr17 48678117 48678117 1 + C T COAD 48678116 + 48678096 48678136 41 GAACGGGTCCGCGCGTGGATCCGAGCCCGACTCCCTGCCTG GAACGGGTCCGCGCGTGGATCTGAGCCCGACTCCCTGCCTG < 41bp 0.502454917384347 0.708665005613355 0.8857385 0.8402493 prediction 0.412420176458015 Functional Gain - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48678116 chr17:48678117 stopgain 0.982 0 22 hm5C_associated_SNPs_126613 0 0 0 0 2 CACNA1G chr17:48678087 3'AG 48678087 Downstream 31bp
chr17 48678117 48678117 1 + C T COAD 48678116 + 48678096 48678136 41 GAACGGGTCCGCGCGTGGATCCGAGCCCGACTCCCTGCCTG GAACGGGTCCGCGCGTGGATCTGAGCCCGACTCCCTGCCTG < 41bp 0.502454917384347 0.708665005613355 0.8857385 0.8402493 prediction 0.412420176458015 Functional Gain - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48678116 chr17:48678117 stopgain 0.982 0 22 hm5C_associated_SNPs_126613 0 0 0 0 2 CACNA1G chr17:48678187 5'GT 48678187 Upstream 71bp
chr16 1552759 1552759 1 + C T STAD 1552758 + 1552738 1552778 41 CGTCACGGTCACAGACCCGGCCCCGGTGAGTTCCCGCACCC CGTCACGGTCACAGACCCGGCTCCGGTGAGTTCCCGCACCC < 41bp 0.459550629063523 0.706206790171037 0.30275857 0.28723127 prediction 0.412413580342073 Functional Gain - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1552758 chr16:1552759 synonymous SNV . 0 22 hm5C_associated_SNPs_126614 0 0 1 0 1 TELO2 chr16:1552762 5'GT 1552762 Upstream 4bp
chr16 2283130 2283130 1 + A G LIHC 2283127 + 2283107 2283147 41 GCCAAGGGCACCGTCATCCACGAAGTCCACGTCCAGATGCA GCCAAGGGCACCGTCATCCACGAGGTCCACGTCCAGATGCA < 41bp 0.618889273946447 0.825093029600622 0.79817855 0.9050114 prediction 0.41240751130835 Functional Gain - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2283127 chr16:2283130 synonymous SNV . 0 24 hm5C_associated_SNPs_126616 0 0 1 0 1 E4F1 chr16:2283184 5'GT 2283184 Upstream 55bp
chr1 150471005 150471005 1 + C T SKCM 150471004 + 150470984 150471024 41 GTTCGCCCACCGGCCCAGATCCTGGCGGGAACTGCCCCTGC GTTCGCCCACCGGCCCAGATCTTGGCGGGAACTGCCCCTGC < 41bp 0.635104391902721 0.841307672143064 0.92644536 0.8823378 prediction 0.412406560480686 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150471004 chr1:150471005 synonymous SNV . 0 22 hm5C_associated_SNPs_126617 0 0 1 0 1 TARS2 chr1:150470978 3'AG 150470978 Downstream 28bp
chr17 74075573 74075573 1 + C T CESC 74075572 + 74075552 74075592 41 AAGAAGGTTCAGGAAAGCATCCAGATCCCGAACAATGGGAG AAGAAGGTTCAGGAAAGCATCTAGATCCCGAACAATGGGAG < 41bp 0.614313728960516 0.820515687777908 0.32857233 0.26728028 prediction 0.412403917634784 Functional Gain - ZACN ENSG00000186919 CDS Human protein_coding chr17:74075572 chr17:74075573 stopgain 0.277 0 22 hm5C_associated_SNPs_126618 0 0 0 0 2 ZACN chr17:74075520 3'AG 74075520 Downstream 54bp
chr17 74075573 74075573 1 + C T CESC 74075572 + 74075552 74075592 41 AAGAAGGTTCAGGAAAGCATCCAGATCCCGAACAATGGGAG AAGAAGGTTCAGGAAAGCATCTAGATCCCGAACAATGGGAG < 41bp 0.614313728960516 0.820515687777908 0.32857233 0.26728028 prediction 0.412403917634784 Functional Gain - ZACN ENSG00000186919 CDS Human protein_coding chr17:74075572 chr17:74075573 stopgain 0.277 0 22 hm5C_associated_SNPs_126618 0 0 0 0 2 ZACN chr17:74075644 5'GT 74075644 Upstream 72bp
chr2 46228648 46228648 1 + C T LUSC 46228647 + 46228627 46228667 41 TGGCCGACCTGGGCGTTACCCCAGACAAAATCACCAACAGC TGGCCGACCTGGGCGTTACCCTAGACAAAATCACCAACAGC < 41bp 0.462039482852374 0.706200084895164 0.7949916 0.73960733 prediction 0.412400169790329 Functional Gain - PRKCE ENSG00000171132 CDS Human protein_coding chr2:46228647 chr2:46228648 nonsynonymous SNV 0.953 2 22 hm5C_associated_SNPs_126619 0 0 0 0 1 PRKCE chr2:46228685 5'GT 46228685 Upstream 38bp
chr10 106160446 106160446 1 + T C UCEC 106160443 + 106160423 106160463 41 TCCCTACCTTCCTAGGTCATCAGTGAGAGAGATATCCTGGG TCCCTACCTTCCTAGGTCATCAGCGAGAGAGATATCCTGGG < 41bp 0.506759390605994 0.712955358854559 0.41044858 0.684384 prediction 0.41239193649713 Functional Gain - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106160443 chr10:106160446 synonymous SNV . 0 24 hm5C_associated_SNPs_126622 0 0 0 0 1 CFAP58 chr10:106160438 3'AG 106160438 Downstream 9bp
chr6 86200256 86200256 1 + T C UCEC 86200253 + 86200233 86200273 41 TACCTGGGAGAACCTGGCTGCTGTATTGCCCTTTGGAGGCA TACCTGGGAGAACCTGGCTGCTGCATTGCCCTTTGGAGGCA < 41bp 0.476951352530939 0.706191831020529 0.18634796 0.19936284 prediction 0.412383662041058 Functional Gain - NT5E ENSG00000135318 CDS Human protein_coding chr6:86200253 chr6:86200256 nonsynonymous SNV 0.976 1 24 hm5C_associated_SNPs_126624 0 0 0 0 1 NT5E chr6:86200226 3'AG 86200226 Downstream 31bp
chr4 84457912 84457912 1 + T C LUAD 84457909 + 84457889 84457929 41 CATGAAGATCCTAGTGAAAACTTTAGAGGTGAGTGCCGGGA CATGAAGATCCTAGTGAAAACTTCAGAGGTGAGTGCCGGGA < 41bp 0.486688222730503 0.706190895964082 0.056655347 0.27676147 prediction 0.412381791928164 Functional Gain - GPAT3 ENSG00000138678 CDS Human protein_coding chr4:84457909 chr4:84457912 nonsynonymous SNV 0.985 1 24 hm5C_associated_SNPs_126626 0 0 0 0 1 GPAT3 chr4:84457916 5'GT 84457916 Upstream 5bp
chr12 121613271 121613271 1 + T G UCEC 121613267 + 121613247 121613287 41 TCGGGATCCGTTTTGACATCCTGGTTTTTGGCACCGTAAGT TCGGGATCCGTTTTGACATCCTGGGTTTTGGCACCGTAAGT < 41bp 0.504981962389982 0.711170940059884 0.09852269 0.1666564 prediction 0.412377955339802 Functional Gain - P2RX7 ENSG00000089041 CDS Human protein_coding chr12:121613267 chr12:121613271 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_126627 0 0 0 0 2 P2RX7 chr12:121613191 3'AG 121613191 Downstream 81bp
chr12 121613271 121613271 1 + T G UCEC 121613267 + 121613247 121613287 41 TCGGGATCCGTTTTGACATCCTGGTTTTTGGCACCGTAAGT TCGGGATCCGTTTTGACATCCTGGGTTTTGGCACCGTAAGT < 41bp 0.504981962389982 0.711170940059884 0.09852269 0.1666564 prediction 0.412377955339802 Functional Gain - P2RX7 ENSG00000089041 CDS Human protein_coding chr12:121613267 chr12:121613271 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_126627 0 0 0 0 2 P2RX7 chr12:121613281 5'GT 121613281 Upstream 11bp
chr19 14675667 14675667 1 + C T HNSC 14675666 + 14675646 14675686 41 AATCACCCTCTCTACACTCCCCCTAGTAAGTGGCCTCAGAC AATCACCCTCTCTACACTCCCTCTAGTAAGTGGCCTCAGAC < 41bp 0.431858543265858 0.70618685280978 0.08886337 0.8149532 prediction 0.41237370561956 Functional Gain - TECR ENSG00000099797 CDS Human protein_coding chr19:14675666 chr19:14675667 nonsynonymous SNV 0.978 3 22 hm5C_associated_SNPs_126628 0 0 1 0 2 TECR chr19:14675598 3'AG 14675598 Downstream 70bp
chr19 14675667 14675667 1 + C T HNSC 14675666 + 14675646 14675686 41 AATCACCCTCTCTACACTCCCCCTAGTAAGTGGCCTCAGAC AATCACCCTCTCTACACTCCCTCTAGTAAGTGGCCTCAGAC < 41bp 0.431858543265858 0.70618685280978 0.08886337 0.8149532 prediction 0.41237370561956 Functional Gain - TECR ENSG00000099797 CDS Human protein_coding chr19:14675666 chr19:14675667 nonsynonymous SNV 0.978 3 22 hm5C_associated_SNPs_126628 0 0 1 0 2 TECR chr19:14675670 5'GT 14675670 Upstream 4bp
chr22 43558862 43558862 1 + C T UCEC 43558861 + 43558841 43558881 41 GGCGGCAGCCACTACCGTGGCCTGGTACCAGGTGAGCCCGC GGCGGCAGCCACTACCGTGGCTTGGTACCAGGTGAGCCCGC < 41bp 0.575948249733998 0.782127093354395 0.24048671 0.18678337 prediction 0.412357687240794 Functional Gain - TSPO ENSG00000100300 CDS Human protein_coding chr22:43558861 chr22:43558862 synonymous SNV . 0 22 hm5C_associated_SNPs_126630 0 0 1 0 1 TSPO chr22:43558809 3'AG 43558809 Downstream 54bp
chr13 32371378 32371378 1 + T C COAD 32371375 + 32371355 32371395 41 TTTCTCATCATTGTGTTTTCCTATATTACTATGTTCTGTTC TTTCTCATCATTGTGTTTTCCTACATTACTATGTTCTGTTC < 41bp 0.56585285727067 0.772024141682644 0.16156152 0.5663831 prediction 0.412342568823949 Functional Gain - RXFP2 ENSG00000133105 CDS Human protein_coding chr13:32371375 chr13:32371378 synonymous SNV . 0 24 hm5C_associated_SNPs_126635 0 0 0 0 1 RXFP2 chr13:32371338 3'AG 32371338 Downstream 41bp
chr7 130002827 130002827 1 + C A LUSC 130002826 + 130002806 130002846 41 CCTGATGGGTTTGCTTTTACCCACAGCATGGTGAGGGAACC CCTGATGGGTTTGCTTTTACCAACAGCATGGTGAGGGAACC < 41bp 0.634409444624827 0.840580289354537 0.11686018 0.23996028 prediction 0.41234168945942 Functional Gain - CPA5 ENSG00000158525 CDS Human protein_coding chr7:130002826 chr7:130002827 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_126636 0 0 0 0 1 CPA5 chr7:130002835 5'GT 130002835 Upstream 9bp
chr5 128351709 128351709 1 + C A LUAD 128351705 + 128351685 128351725 41 ACTTTATGCAGCTACCGAATCAAGCATATCTTTCATGAACT ACTTTATGCAGCTACCGAATCAAGAATATCTTTCATGAACT < 41bp 0.286304861227725 0.706159061912462 0.12649801 0.132348 prediction 0.412318123824925 Functional Gain - SLC27A6 ENSG00000113396 CDS Human protein_coding chr5:128351705 chr5:128351709 nonsynonymous SNV 0.701 2 25 hm5C_associated_SNPs_126639 0 0 0 0 1 SLC27A6 chr5:128351772 5'GT 128351772 Upstream 64bp
chr2 121740357 121740357 1 + C T rs137960978 121740356 + 121740336 121740376 41 GACACACCTGCGGTCCCACACCGGGGAGAAGCCATATGTGT GACACACCTGCGGTCCCACACTGGGGAGAAGCCATATGTGT < 41bp 0.455421717732217 0.706158362765502 0.8501141 0.32081878 prediction 0.412316725531004 Functional Gain - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121740356 chr2:121740357 synonymous SNV . 0 22 hm5C_associated_SNPs_126640 0 0 1 0 2 GLI2 chr2:121740292 3'AG 121740292 Downstream 66bp
chr2 121740357 121740357 1 + C T rs137960978 121740356 + 121740336 121740376 41 GACACACCTGCGGTCCCACACCGGGGAGAAGCCATATGTGT GACACACCTGCGGTCCCACACTGGGGAGAAGCCATATGTGT < 41bp 0.455421717732217 0.706158362765502 0.8501141 0.32081878 prediction 0.412316725531004 Functional Gain - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121740356 chr2:121740357 synonymous SNV . 0 22 hm5C_associated_SNPs_126640 0 0 1 0 2 GLI2 chr2:121740456 5'GT 121740456 Upstream 100bp
chr14 66096258 66096258 1 + T A LUSC 66096254 + 66096234 66096274 41 CCTCAGTCAGACAGATGGAGCAGGTGATTGGCGGGAAAAAG CCTCAGTCAGACAGATGGAGCAGGAGATTGGCGGGAAAAAG < 41bp 0.389815345476764 0.706155312306399 0.39682955 0.54917526 prediction 0.412310624612799 Functional Gain - FUT8 ENSG00000033170 CDS Human protein_coding chr14:66096254 chr14:66096258 synonymous SNV . 0 25 hm5C_associated_SNPs_126642 0 0 1 0 2 FUT8 chr14:66096210 3'AG 66096210 Downstream 49bp
chr14 66096258 66096258 1 + T A LUSC 66096254 + 66096234 66096274 41 CCTCAGTCAGACAGATGGAGCAGGTGATTGGCGGGAAAAAG CCTCAGTCAGACAGATGGAGCAGGAGATTGGCGGGAAAAAG < 41bp 0.389815345476764 0.706155312306399 0.39682955 0.54917526 prediction 0.412310624612799 Functional Gain - FUT8 ENSG00000033170 CDS Human protein_coding chr14:66096254 chr14:66096258 synonymous SNV . 0 25 hm5C_associated_SNPs_126642 0 0 1 0 2 FUT8 chr14:66096324 5'GT 66096324 Upstream 67bp
chr11 36483945 36483945 1 + C T SKCM 36483944 + 36483924 36483964 41 ACTGTCCTGAACTATGCCTCCCCGATAACCGCAGTCAGCCG ACTGTCCTGAACTATGCCTCCTCGATAACCGCAGTCAGCCG < 41bp 0.634406377563444 0.840560003730143 0.022909194 0.28282386 prediction 0.412307252333398 Functional Gain - PRR5L ENSG00000135362 CDS Human protein_coding chr11:36483944 chr11:36483945 nonsynonymous SNV 0.014 0 22 hm5C_associated_SNPs_126643 0 0 1 0 1 PRR5L chr11:36483892 3'AG 36483892 Downstream 54bp
chr2 207454228 207454228 1 + T C UCEC 207454225 + 207454205 207454245 41 AGGATGGAGACCGGTGGATTCAGTGCAGCAAACAGTGAGTG AGGATGGAGACCGGTGGATTCAGCGCAGCAAACAGTGAGTG < 41bp 0.535030108853224 0.741180151471975 0.4001476 0.38677654 prediction 0.412300085237502 Functional Gain - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207454225 chr2:207454228 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_126647 0 0 0 0 2 ADAM23 chr2:207454133 3'AG 207454133 Downstream 96bp
chr2 207454228 207454228 1 + T C UCEC 207454225 + 207454205 207454245 41 AGGATGGAGACCGGTGGATTCAGTGCAGCAAACAGTGAGTG AGGATGGAGACCGGTGGATTCAGCGCAGCAAACAGTGAGTG < 41bp 0.535030108853224 0.741180151471975 0.4001476 0.38677654 prediction 0.412300085237502 Functional Gain - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207454225 chr2:207454228 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_126647 0 0 0 0 2 ADAM23 chr2:207454238 5'GT 207454238 Upstream 11bp
chr15 45408406 45408406 1 + C G rs530360466 45408403 + 45408383 45408423 41 CTTCAGCGCAGCGCGCGTTACAGCCCGTGTCCGTCTGCTCG CTTCAGCGCAGCGCGCGTTACAGGCCGTGTCCGTCTGCTCG < 41bp 0.520571692556853 0.726710419102955 0.06191674 0.27998853 prediction 0.412277453092205 Functional Gain - DUOXA2 ENSG00000140274 CDS Human protein_coding chr15:45408403 chr15:45408406 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_126654 0 0 0 0 2 DUOXA2 chr15:45408322 3'AG 45408322 Downstream 85bp
chr15 45408406 45408406 1 + C G rs530360466 45408403 + 45408383 45408423 41 CTTCAGCGCAGCGCGCGTTACAGCCCGTGTCCGTCTGCTCG CTTCAGCGCAGCGCGCGTTACAGGCCGTGTCCGTCTGCTCG < 41bp 0.520571692556853 0.726710419102955 0.06191674 0.27998853 prediction 0.412277453092205 Functional Gain - DUOXA2 ENSG00000140274 CDS Human protein_coding chr15:45408403 chr15:45408406 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_126654 0 0 0 0 2 DUOXA2 chr15:45408456 5'GT 45408456 Upstream 51bp
chr14 105222059 105222059 1 + C T UCEC 105222058 + 105222038 105222078 41 GTCGTTCACCTGCCAGAGTCCCCAAAGCCTGGCCCTACAGG GTCGTTCACCTGCCAGAGTCCTCAAAGCCTGGCCCTACAGG < 41bp 0.44093358838343 0.706132902250712 0.25409135 0.10813066 prediction 0.412265804501423 Functional Gain - SIVA1 ENSG00000184990 CDS Human protein_coding chr14:105222058 chr14:105222059 nonsynonymous SNV 0.388 0 22 hm5C_associated_SNPs_126655 0 0 1 0 1 SIVA1 chr14:105221967 3'AG 105221967 Downstream 93bp
chr21 40883712 40883712 1 + T A rs79433162 40883710 + 40883690 40883730 41 CGAAGATTCCTAGGCCTTTTCATGCTTCATTTCTTCCACTT CGAAGATTCCTAGGCCTTTTCAAGCTTCATTTCTTCCACTT < 41bp 0.506146784883065 0.712272905211325 0.23347 0.7048888 prediction 0.41225224065652 Functional Gain - SH3BGR;WRB-SH3BGR ENSG00000185437 UTR3 Human protein_coding chr21:40883710 chr21:40883712 . . 0 23 hm5C_associated_SNPs_126657 0 0 1 0 1 SH3BGR;WRB-SH3BGR chr21:40883736 5'GT 40883736 Upstream 25bp
chr7 142499894 142499894 1 + T C LUSC 142499892 + 142499872 142499912 41 AGTGCCCTCGTGCTGATGGCCATGGTAAGGAGGAGGGTGGG AGTGCCCTCGTGCTGATGGCCACGGTAAGGAGGAGGGTGGG < 41bp 0.586990181909988 0.793116266973677 0.3528232 0.2551703 prediction 0.412252170127377 Functional Gain - PRSS3P2;EPHB6 ENSG00000211772 CDS Human TR_C_gene chr7:142499892 chr7:142499894 unknown . 0 23 hm5C_associated_SNPs_126658 0 0 0 0 1 PRSS3P2;EPHB6 chr7:142499895 5'GT 142499895 Upstream 2bp
chr10 75560160 75560160 1 + C G rs181929079 75560159 + 75560139 75560179 41 GAGCGGAGGTTTTCCACCGCCCGAGGAGGAGACACACAGTC GAGCGGAGGTTTTCCACCGCCGGAGGAGGAGACACACAGTC < 41bp 0.379098993800008 0.706125560476304 0.639576 0.934931 prediction 0.412251120952608 Functional Gain - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75560159 chr10:75560160 synonymous SNV . 0 22 hm5C_associated_SNPs_126659 0 0 1 0 1 ZSWIM8 chr10:75560230 5'GT 75560230 Upstream 71bp
chr11 61257410 61257410 1 + C A rs149799908 61257406 + 61257386 61257426 41 GAGCCTGCGGCACCTGCATCCCCACGTGGGAAGGTGGCACC GAGCCTGCGGCACCTGCATCCCCAAGTGGGAAGGTGGCACC < 41bp 0.298143088869413 0.706121919478533 0.26740128 0.3909716 prediction 0.412243838957067 Functional Gain - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61257406 chr11:61257410 nonsynonymous SNV 0.787 0 25 hm5C_associated_SNPs_126661 0 0 0 0 1 PPP1R32 chr11:61257418 5'GT 61257418 Upstream 9bp
chr14 70237962 70237962 1 + T C UCEC 70237960 + 70237940 70237980 41 CCAGAAGTTCCTCTAGGTCTCGTAGCCGATCCCGTTCCCGT CCAGAAGTTCCTCTAGGTCTCGCAGCCGATCCCGTTCCCGT < 41bp 0.446969374008264 0.706111549105388 0.91557264 0.90340906 prediction 0.412223098210777 Functional Gain - SRSF5 ENSG00000100650 CDS Human protein_coding chr14:70237960 chr14:70237962 synonymous SNV . 0 23 hm5C_associated_SNPs_126666 0 0 1 0 1 SRSF5 chr14:70237911 3'AG 70237911 Downstream 52bp
chr14 77930956 77930956 1 + T A GBM 77930954 + 77930934 77930974 41 TTTTCAGAGTTCACCCAGGGCATGATCTTACCTACAATGAA TTTTCAGAGTTCACCCAGGGCAAGATCTTACCTACAATGAA < 41bp 0.490955071384501 0.70610046022441 0.017057836 0.020632595 prediction 0.41220092044882 Functional Gain - AHSA1 ENSG00000100591 CDS Human protein_coding chr14:77930954 chr14:77930956 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_126667 0 0 1 0 1 AHSA1 chr14:77931029 5'GT 77931029 Upstream 74bp
chr6 43222801 43222801 1 + C T COAD 43222800 + 43222780 43222820 41 TCTGCAGCCTCGGAATGTGGCCGGGTTTCGAGGAACGGTTC TCTGCAGCCTCGGAATGTGGCTGGGTTTCGAGGAACGGTTC < 41bp 0.472252002136677 0.706096021252799 0.81763774 0.2983656 prediction 0.412192042505598 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43222800 chr6:43222801 synonymous SNV . 0 22 hm5C_associated_SNPs_126669 0 0 0 0 2 TTBK1 chr6:43222787 3'AG 43222787 Downstream 15bp
chr6 43222801 43222801 1 + C T COAD 43222800 + 43222780 43222820 41 TCTGCAGCCTCGGAATGTGGCCGGGTTTCGAGGAACGGTTC TCTGCAGCCTCGGAATGTGGCTGGGTTTCGAGGAACGGTTC < 41bp 0.472252002136677 0.706096021252799 0.81763774 0.2983656 prediction 0.412192042505598 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43222800 chr6:43222801 synonymous SNV . 0 22 hm5C_associated_SNPs_126669 0 0 0 0 2 TTBK1 chr6:43222852 5'GT 43222852 Upstream 52bp
chr1 75602834 75602834 1 + C T STAD 75602833 + 75602813 75602853 41 ACTCGTGCTCCTCCTCGGCCCCGCTGTCCCCGTCGTCCTCG ACTCGTGCTCCTCCTCGGCCCTGCTGTCCCCGTCGTCCTCG < 41bp 0.603653207504358 0.809746754444256 0.029682368 0.031644374 prediction 0.412187093879796 Functional Gain - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75602833 chr1:75602834 nonsynonymous SNV 0.492 2 22 hm5C_associated_SNPs_126671 0 0 0 0 2 LHX8 chr1:75602785 3'AG 75602785 Downstream 50bp
chr1 75602834 75602834 1 + C T STAD 75602833 + 75602813 75602853 41 ACTCGTGCTCCTCCTCGGCCCCGCTGTCCCCGTCGTCCTCG ACTCGTGCTCCTCCTCGGCCCTGCTGTCCCCGTCGTCCTCG < 41bp 0.603653207504358 0.809746754444256 0.029682368 0.031644374 prediction 0.412187093879796 Functional Gain - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75602833 chr1:75602834 nonsynonymous SNV 0.492 2 22 hm5C_associated_SNPs_126671 0 0 0 0 2 LHX8 chr1:75602790 3'AG 75602790 Downstream 45bp
chr21 43838572 43838572 1 + T A STAD 43838568 + 43838548 43838588 41 GGATGAGCTGACGCTAAGTCCTGGTGACTACATCTTTGTGG GGATGAGCTGACGCTAAGTCCTGGAGACTACATCTTTGTGG < 41bp 0.692585171987777 0.898676665961535 0.3287894 0.23703933 prediction 0.412182987947515 Functional Gain - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43838568 chr21:43838572 synonymous SNV . 0 25 hm5C_associated_SNPs_126672 0 0 0 0 1 UBASH3A chr21:43838510 3'AG 43838510 Downstream 63bp
chr19 5776250 5776250 1 + C A rs553233604 5776249 + 5776229 5776269 41 CAGTATCAGATCTTGGGCGGCCGGACAGCAAACCAGATCAT CAGTATCAGATCTTGGGCGGCAGGACAGCAAACCAGATCAT < 41bp 0.436421651569467 0.706090746080919 0.6932695 0.86747336 prediction 0.412181492161837 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5776249 chr19:5776250 synonymous SNV . 0 22 hm5C_associated_SNPs_126673 0 0 0 0 2 CATSPERD chr19:5776172 3'AG 5776172 Downstream 79bp
chr19 5776250 5776250 1 + C A rs553233604 5776249 + 5776229 5776269 41 CAGTATCAGATCTTGGGCGGCCGGACAGCAAACCAGATCAT CAGTATCAGATCTTGGGCGGCAGGACAGCAAACCAGATCAT < 41bp 0.436421651569467 0.706090746080919 0.6932695 0.86747336 prediction 0.412181492161837 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5776249 chr19:5776250 synonymous SNV . 0 22 hm5C_associated_SNPs_126673 0 0 0 0 2 CATSPERD chr19:5776326 5'GT 5776326 Upstream 77bp
chr19 10129427 10129427 1 + C A HNSC 10129426 + 10129406 10129446 41 GTGAATAATGCTGGAATGGGCCTGGTGGGGCCCCTGGAGGG GTGAATAATGCTGGAATGGGCATGGTGGGGCCCCTGGAGGG < 41bp 0.441300174906998 0.706088610326928 0.47600192 0.7932597 prediction 0.412177220653856 Functional Gain - RDH8 ENSG00000080511 CDS Human protein_coding chr19:10129426 chr19:10129427 nonsynonymous SNV 0.960 1 22 hm5C_associated_SNPs_126675 0 0 0 0 1 RDH8 chr19:10129407 3'AG 10129407 Downstream 21bp
chr7 100275756 100275756 1 + T C UCEC 100275753 + 100275733 100275773 41 CATTGAGACAGGCCAGCAGACAGTGGGTTTTGCTGGACACA CATTGAGACAGGCCAGCAGACAGCGGGTTTTGCTGGACACA < 41bp 0.525097454338355 0.731185767832957 0.22884145 0.3972949 prediction 0.412176626989203 Functional Gain - GNB2 ENSG00000172354 CDS Human protein_coding chr7:100275753 chr7:100275756 nonsynonymous SNV 0.991 1 24 hm5C_associated_SNPs_126676 0 0 1 0 1 GNB2 chr7:100275721 3'AG 100275721 Downstream 36bp
chr1 112018679 112018679 1 + C T LGG 112018678 + 112018658 112018698 41 GCAATGGCTCCACATGTAAACCCGACACTGGTGAGTTTACG GCAATGGCTCCACATGTAAACTCGACACTGGTGAGTTTACG < 41bp 0.604884994809835 0.810973018092728 0.036446333 0.18257767 prediction 0.412176046565786 Functional Gain - C1orf162 ENSG00000143110 CDS Human protein_coding chr1:112018678 chr1:112018679 nonsynonymous SNV 0.002 2 22 hm5C_associated_SNPs_126677 0 0 1 0 2 C1orf162 chr1:112018640 3'AG 112018640 Downstream 40bp
chr1 112018679 112018679 1 + C T LGG 112018678 + 112018658 112018698 41 GCAATGGCTCCACATGTAAACCCGACACTGGTGAGTTTACG GCAATGGCTCCACATGTAAACTCGACACTGGTGAGTTTACG < 41bp 0.604884994809835 0.810973018092728 0.036446333 0.18257767 prediction 0.412176046565786 Functional Gain - C1orf162 ENSG00000143110 CDS Human protein_coding chr1:112018678 chr1:112018679 nonsynonymous SNV 0.002 2 22 hm5C_associated_SNPs_126677 0 0 1 0 2 C1orf162 chr1:112018687 5'GT 112018687 Upstream 9bp
chr12 58016715 58016715 1 + C T MESO 58016714 + 58016694 58016734 41 AGCTACACTATTGACTCCAACCAGGTGGGACTCTGACTGTG AGCTACACTATTGACTCCAACTAGGTGGGACTCTGACTGTG < 41bp 0.451034669819426 0.706086538825193 0.9322649 0.36040092 prediction 0.412173077650385 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58016714 chr12:58016715 stopgain 0.975 0 22 hm5C_associated_SNPs_126678 0 0 1 0 1 SLC26A10 chr12:58016717 5'GT 58016717 Upstream 3bp
chr11 130332446 130332446 1 + C T rs552760671 130332445 + 130332425 130332465 41 TCTCCCTGCCCGAGGATCTGCCGGGCGCCAGCTACACCCTG TCTCCCTGCCCGAGGATCTGCTGGGCGCCAGCTACACCCTG < 41bp 0.602548390362785 0.808633152401664 0.88866645 0.40679792 prediction 0.412169524077758 Functional Gain - ADAMTS15 ENSG00000166106 CDS Human protein_coding chr11:130332445 chr11:130332446 nonsynonymous SNV 0.569 3 22 hm5C_associated_SNPs_126679 0 0 0 0 1 ADAMTS15 chr11:130332392 3'AG 130332392 Downstream 55bp
chr8 11640783 11640783 1 + C T SKCM 11640782 + 11640762 11640802 41 AGTTGTCTTGGAGCTCTTCCCCAGTGGTCACACCCACCTGT AGTTGTCTTGGAGCTCTTCCCTAGTGGTCACACCCACCTGT < 41bp 0.622380173359698 0.828464670449962 0.4225485 0.306822 prediction 0.412168994180527 Functional Gain - NEIL2 ENSG00000154328 CDS Human protein_coding chr8:11640782 chr8:11640783 nonsynonymous SNV 0.047 1 22 hm5C_associated_SNPs_126680 0 0 1 0 1 NEIL2 chr8:11640712 3'AG 11640712 Downstream 72bp
chr11 71847017 71847017 1 + A G ESCA 71847014 + 71846994 71847034 41 AATAGATGGACATGGCCTGGCAGATGATGCAGCTGCTGCTT AATAGATGGACATGGCCTGGCAGGTGATGCAGCTGCTGCTT < 41bp 0.614195489236656 0.820274650564327 0.91384083 0.92487746 prediction 0.412158322655341 Functional Gain - FOLR3 ENSG00000110203 CDS Human protein_coding chr11:71847014 chr11:71847017 nonsynonymous SNV 0.010 0 24 hm5C_associated_SNPs_126681 0 0 0 0 1 FOLR3 chr11:71846993 3'AG 71846993 Downstream 25bp
chr2 207436471 207436471 1 + T C UCEC 207436468 + 207436448 207436488 41 TAGGAATGCTATGGATTATGCTGTAAGAAATGTTCCCTCTC TAGGAATGCTATGGATTATGCTGCAAGAAATGTTCCCTCTC < 41bp 0.565477145394651 0.771555962093452 0.5260634 0.48742273 prediction 0.412157633397603 Functional Gain - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207436468 chr2:207436471 synonymous SNV . 0 24 hm5C_associated_SNPs_126682 0 0 1 0 2 ADAM23 chr2:207436451 3'AG 207436451 Downstream 21bp
chr2 207436471 207436471 1 + T C UCEC 207436468 + 207436448 207436488 41 TAGGAATGCTATGGATTATGCTGTAAGAAATGTTCCCTCTC TAGGAATGCTATGGATTATGCTGCAAGAAATGTTCCCTCTC < 41bp 0.565477145394651 0.771555962093452 0.5260634 0.48742273 prediction 0.412157633397603 Functional Gain - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207436468 chr2:207436471 synonymous SNV . 0 24 hm5C_associated_SNPs_126682 0 0 1 0 2 ADAM23 chr2:207436540 5'GT 207436540 Upstream 70bp
chrX 153551630 153551630 1 + C A LUAD 153551629 + 153551609 153551649 41 CCCAAGTGCACGATCTTCTACCCAACTGATGCCGTCTCCAC CCCAAGTGCACGATCTTCTACACAACTGATGCCGTCTCCAC < 41bp 0.436923356889461 0.706078202747303 0.05074987 0.025223672 prediction 0.412156405494606 Functional Gain - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153551629 chrX:153551630 nonsynonymous SNV 0.894 4 22 hm5C_associated_SNPs_126683 0 0 0 0 2 TKTL1 chrX:153551553 3'AG 153551553 Downstream 78bp
chrX 153551630 153551630 1 + C A LUAD 153551629 + 153551609 153551649 41 CCCAAGTGCACGATCTTCTACCCAACTGATGCCGTCTCCAC CCCAAGTGCACGATCTTCTACACAACTGATGCCGTCTCCAC < 41bp 0.436923356889461 0.706078202747303 0.05074987 0.025223672 prediction 0.412156405494606 Functional Gain - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153551629 chrX:153551630 nonsynonymous SNV 0.894 4 22 hm5C_associated_SNPs_126683 0 0 0 0 2 TKTL1 chrX:153551683 5'GT 153551683 Upstream 54bp
chr2 43937190 43937190 1 + C G rs55657424 43937189 + 43937169 43937209 41 TATTCCTCCTGATGCTTACTCCACAGACACGGAGTACTCAC TATTCCTCCTGATGCTTACTCGACAGACACGGAGTACTCAC < 41bp 0.383486458146849 0.706076213504051 0.08068776 0.42129177 prediction 0.412152427008102 Functional Gain - PLEKHH2 ENSG00000152527 CDS Human protein_coding chr2:43937189 chr2:43937190 synonymous SNV . 0 22 hm5C_associated_SNPs_126684 0 0 0 0 2 PLEKHH2 chr2:43937129 3'AG 43937129 Downstream 62bp
chr2 43937190 43937190 1 + C G rs55657424 43937189 + 43937169 43937209 41 TATTCCTCCTGATGCTTACTCCACAGACACGGAGTACTCAC TATTCCTCCTGATGCTTACTCGACAGACACGGAGTACTCAC < 41bp 0.383486458146849 0.706076213504051 0.08068776 0.42129177 prediction 0.412152427008102 Functional Gain - PLEKHH2 ENSG00000152527 CDS Human protein_coding chr2:43937189 chr2:43937190 synonymous SNV . 0 22 hm5C_associated_SNPs_126684 0 0 0 0 2 PLEKHH2 chr2:43937265 5'GT 43937265 Upstream 76bp
chr17 41585853 41585853 1 + C T BLCA 41585852 + 41585832 41585872 41 CTTCCCAGTGAGATGCAGACCCGAATCTTTGACCCAGCTCC CTTCCCAGTGAGATGCAGACCTGAATCTTTGACCCAGCTCC < 41bp 0.440176097506575 0.706075511336806 0.31238425 0.39059356 prediction 0.412151022673613 Functional Gain - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41585852 chr17:41585853 stopgain 1.000 1 22 hm5C_associated_SNPs_126685 0 0 1 0 1 DHX8 chr17:41585888 5'GT 41585888 Upstream 36bp
chr17 71231639 71231639 1 + C G COAD 71231638 + 71231618 71231658 41 TAGGATGAGTGATAATCCACCCAGAATGGAAGTGTGTCCTT TAGGATGAGTGATAATCCACCGAGAATGGAAGTGTGTCCTT < 41bp 0.401960115661579 0.70607389946969 0.083343625 0.2250416 prediction 0.412147798939379 Functional Gain - C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71231638 chr17:71231639 synonymous SNV . 0 22 hm5C_associated_SNPs_126687 0 0 1 0 1 C17orf80 chr17:71231615 3'AG 71231615 Downstream 25bp
chr11 119053921 119053921 1 + A G UCEC 119053918 + 119053898 119053938 41 GTGCCCGGGTGGTGGTGTCACTGACAGAGGGGACGGCGGTG GTGCCCGGGTGGTGGTGTCACTGGCAGAGGGGACGGCGGTG < 41bp 0.452889085986475 0.706072921198255 0.21370026 0.37784624 prediction 0.41214584239651 Functional Gain - NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119053918 chr11:119053921 nonsynonymous SNV 0.629 3 24 hm5C_associated_SNPs_126688 0 0 0 0 1 NLRX1 chr11:119053827 3'AG 119053827 Downstream 95bp
chr12 107080794 107080794 1 + C T SKCM 107080793 + 107080773 107080813 41 ACAGACAGTGGCATATTCACCCCGGTCCAAACTCGGAACAC ACAGACAGTGGCATATTCACCTCGGTCCAAACTCGGAACAC < 41bp 0.628250485253258 0.834321633166572 0.2749012 0.2347978 prediction 0.412142295826629 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107080793 chr12:107080794 synonymous SNV . 0 22 hm5C_associated_SNPs_126690 0 0 0 0 1 RFX4 chr12:107080875 5'GT 107080875 Upstream 82bp
chr19 55854170 55854170 1 + C A HNSC 55854166 + 55854146 55854186 41 GGCTTTACCATCCTGCCCTGCACGCGCTACTCCATGGAGAC GGCTTTACCATCCTGCCCTGCACGAGCTACTCCATGGAGAC < 41bp 0.284763080740989 0.706068264261149 0.043491095 0.28673506 prediction 0.412136528522297 Functional Gain - KMT5C ENSG00000133247 CDS Human protein_coding chr19:55854166 chr19:55854170 nonsynonymous SNV 0.933 4 25 hm5C_associated_SNPs_126694 0 0 0 0 2 KMT5C chr19:55854110 3'AG 55854110 Downstream 61bp
chr19 55854170 55854170 1 + C A HNSC 55854166 + 55854146 55854186 41 GGCTTTACCATCCTGCCCTGCACGCGCTACTCCATGGAGAC GGCTTTACCATCCTGCCCTGCACGAGCTACTCCATGGAGAC < 41bp 0.284763080740989 0.706068264261149 0.043491095 0.28673506 prediction 0.412136528522297 Functional Gain - KMT5C ENSG00000133247 CDS Human protein_coding chr19:55854166 chr19:55854170 nonsynonymous SNV 0.933 4 25 hm5C_associated_SNPs_126694 0 0 0 0 2 KMT5C chr19:55854219 5'GT 55854219 Upstream 50bp
chr7 116435768 116435768 1 + C G rs41736 116435764 + 116435744 116435784 41 AAGAGGAGCCCCACCTTATCCTGACGTAAACACCTTTGATA AAGAGGAGCCCCACCTTATCCTGAGGTAAACACCTTTGATA < 41bp 0.433190363812044 0.706066918903225 0.2743752 0.4649922 prediction 0.41213383780645 Functional Gain - MET ENSG00000105976 CDS Human protein_coding chr7:116435764 chr7:116435768 nonsynonymous SNV 0.254 3 25 hm5C_associated_SNPs_126695 0 0 0 0 2 MET chr7:116435709 3'AG 116435709 Downstream 60bp
chr7 116435768 116435768 1 + C G rs41736 116435764 + 116435744 116435784 41 AAGAGGAGCCCCACCTTATCCTGACGTAAACACCTTTGATA AAGAGGAGCCCCACCTTATCCTGAGGTAAACACCTTTGATA < 41bp 0.433190363812044 0.706066918903225 0.2743752 0.4649922 prediction 0.41213383780645 Functional Gain - MET ENSG00000105976 CDS Human protein_coding chr7:116435764 chr7:116435768 nonsynonymous SNV 0.254 3 25 hm5C_associated_SNPs_126695 0 0 0 0 2 MET chr7:116435845 5'GT 116435845 Upstream 78bp
chr14 68028932 68028932 1 + C T READ 68028931 + 68028911 68028951 41 AGGATTCTGTCCCTTCAGAGCCGGGAATCCAGCCTATGGGC AGGATTCTGTCCCTTCAGAGCTGGGAATCCAGCCTATGGGC < 41bp 0.57990229092596 0.785961709999659 0.9321526 0.6620666 prediction 0.412118838147396 Functional Gain - PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68028931 chr14:68028932 nonsynonymous SNV 0.020 0 22 hm5C_associated_SNPs_126698 0 0 1 0 1 PLEKHH1 chr14:68028854 3'AG 68028854 Downstream 79bp
chr19 58571379 58571379 1 + T C LUSC 58571377 + 58571357 58571397 41 CCAGAAGCCAGGGCATGACCCCTGGGGTGCGCGTCTCCACA CCAGAAGCCAGGGCATGACCCCCGGGGTGCGCGTCTCCACA < 41bp 0.459984577236017 0.706055097986483 0.7535099 0.9121909 prediction 0.412110195972966 Functional Gain - ZNF135 ENSG00000176293 CDS Human protein_coding chr19:58571377 chr19:58571379 synonymous SNV . 0 23 hm5C_associated_SNPs_126701 0 0 0 0 3 ZNF135 chr19:58571337 3'AG 58571337 Downstream 43bp
chr19 58571379 58571379 1 + T C LUSC 58571377 + 58571357 58571397 41 CCAGAAGCCAGGGCATGACCCCTGGGGTGCGCGTCTCCACA CCAGAAGCCAGGGCATGACCCCCGGGGTGCGCGTCTCCACA < 41bp 0.459984577236017 0.706055097986483 0.7535099 0.9121909 prediction 0.412110195972966 Functional Gain - ZNF135 ENSG00000176293 CDS Human protein_coding chr19:58571377 chr19:58571379 synonymous SNV . 0 23 hm5C_associated_SNPs_126701 0 0 0 0 3 ZNF135 chr19:58571342 3'AG 58571342 Downstream 38bp
chr19 58571379 58571379 1 + T C LUSC 58571377 + 58571357 58571397 41 CCAGAAGCCAGGGCATGACCCCTGGGGTGCGCGTCTCCACA CCAGAAGCCAGGGCATGACCCCCGGGGTGCGCGTCTCCACA < 41bp 0.459984577236017 0.706055097986483 0.7535099 0.9121909 prediction 0.412110195972966 Functional Gain - ZNF135 ENSG00000176293 CDS Human protein_coding chr19:58571377 chr19:58571379 synonymous SNV . 0 23 hm5C_associated_SNPs_126701 0 0 0 0 3 ZNF135 chr19:58571403 5'GT 58571403 Upstream 25bp
chr6 32410987 32410987 1 + A G rs3135391 32410984 + 32410964 32411004 41 CCTCCAGAGGTAACTGTGCTCACAAACAGCCCTGTGGAACT CCTCCAGAGGTAACTGTGCTCACGAACAGCCCTGTGGAACT < 41bp 0.546662589451719 0.752712139823419 0.045809776 0.09558609 prediction 0.412099100743399 Functional Gain - HLA-DRA ENSG00000204287 CDS Human protein_coding chr6:32410984 chr6:32410987 synonymous SNV . 0 24 hm5C_associated_SNPs_126705 0 0 0 0 1 HLA-DRA chr6:32410962 3'AG 32410962 Downstream 26bp
chr8 48973334 48973334 1 + C T STAD 48973333 + 48973313 48973353 41 GCTAAGACGTCTAATGATGTCCAAAGAAAATATGAAGCTTC GCTAAGACGTCTAATGATGTCTAAAGAAAATATGAAGCTTC < 41bp 0.58703688084963 0.793084224264084 0.054797262 0.036835253 prediction 0.412094686828907 Functional Gain - UBE2V2 ENSG00000169139 CDS Human protein_coding chr8:48973333 chr8:48973334 synonymous SNV . 0 22 hm5C_associated_SNPs_126706 0 0 0 0 1 UBE2V2 chr8:48973242 3'AG 48973242 Downstream 93bp
chr5 170737244 170737244 1 + C G CESC 170737240 + 170737220 170737260 41 CGCCCAAGCGTAAGAAGCCGCGCACGTCCTTTTCCCGGGTG CGCCCAAGCGTAAGAAGCCGCGCAGGTCCTTTTCCCGGGTG < 41bp 0.412386803832916 0.70603982273689 0.10427678 0.22257736 prediction 0.41207964547378 Functional Gain - TLX3 ENSG00000164438 CDS Human protein_coding chr5:170737240 chr5:170737244 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_126708 0 0 0 0 1 TLX3 chr5:170737154 3'AG 170737154 Downstream 91bp
chr5 176731697 176731697 1 + T A SKCM 176731693 + 176731673 176731713 41 ACCAGAAACTGCTGTCCCGGCGACTCCTGACCAAGACCAAC ACCAGAAACTGCTGTCCCGGCGACACCTGACCAAGACCAAC < 41bp 0.372228508052694 0.706039609338088 0.15718362 0.102490336 prediction 0.412079218676176 Functional Gain - PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176731693 chr5:176731697 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_126709 0 0 1 0 1 PRELID1 chr5:176731626 3'AG 176731626 Downstream 72bp
chr19 14705584 14705584 1 + C T STAD 14705583 + 14705563 14705603 41 TCTTCTAGGCCTGGACCTCGCCGCTGTCACCTGTCCACCTC TCTTCTAGGCCTGGACCTCGCTGCTGTCACCTGTCCACCTC < 41bp 0.596773734929582 0.802812054529547 0.11481631 0.06936929 prediction 0.41207663919993 Functional Gain - CLEC17A ENSG00000187912 CDS Human protein_coding chr19:14705583 chr19:14705584 synonymous SNV . 0 22 hm5C_associated_SNPs_126710 0 0 0 0 2 CLEC17A chr19:14705571 3'AG 14705571 Downstream 14bp
chr19 14705584 14705584 1 + C T STAD 14705583 + 14705563 14705603 41 TCTTCTAGGCCTGGACCTCGCCGCTGTCACCTGTCCACCTC TCTTCTAGGCCTGGACCTCGCTGCTGTCACCTGTCCACCTC < 41bp 0.596773734929582 0.802812054529547 0.11481631 0.06936929 prediction 0.41207663919993 Functional Gain - CLEC17A ENSG00000187912 CDS Human protein_coding chr19:14705583 chr19:14705584 synonymous SNV . 0 22 hm5C_associated_SNPs_126710 0 0 0 0 2 CLEC17A chr19:14705612 5'GT 14705612 Upstream 29bp
chr11 552111 552111 1 + C G THCA 552108 + 552088 552128 41 AGGCCAGGGAGCCCCCCGAGCAGCTGCCCCAACACAGGCCA AGGCCAGGGAGCCCCCCGAGCAGGTGCCCCAACACAGGCCA < 41bp 0.560614579286998 0.76664598238773 0.22087082 0.5749278 prediction 0.412062806201463 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:552108 chr11:552111 nonsynonymous SNV 0.004 1 24 hm5C_associated_SNPs_126712 0 0 0 0 1 LRRC56 chr11:552090 3'AG 552090 Downstream 22bp
chr11 43350392 43350392 1 + A G UCEC 43350389 + 43350369 43350409 41 CCAGTTGGGCCGAAAACTTCCAGATTTCTTAACAGCCAAAC CCAGTTGGGCCGAAAACTTCCAGGTTTCTTAACAGCCAAAC < 41bp 0.481615211152935 0.706029738603053 0.30717158 0.546187 prediction 0.412059477206106 Functional Gain - API5 ENSG00000166181 CDS Human protein_coding chr11:43350389 chr11:43350392 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_126714 0 0 1 0 1 API5 chr11:43350443 5'GT 43350443 Upstream 52bp
chr8 24356777 24356777 1 + T C UCEC 24356775 + 24356755 24356795 41 AACAATGGTGAATGTCTAAACATGGAAAAGGTCTATATCTC AACAATGGTGAATGTCTAAACACGGAAAAGGTCTATATCTC < 41bp 0.43900518926844 0.706023357997544 0.14629406 0.18754011 prediction 0.412046715995088 Functional Gain - ADAM7 ENSG00000069206 CDS Human protein_coding chr8:24356775 chr8:24356777 nonsynonymous SNV 0.012 0 23 hm5C_associated_SNPs_126716 0 0 0 0 2 ADAM7 chr8:24356749 3'AG 24356749 Downstream 29bp
chr8 24356777 24356777 1 + T C UCEC 24356775 + 24356755 24356795 41 AACAATGGTGAATGTCTAAACATGGAAAAGGTCTATATCTC AACAATGGTGAATGTCTAAACACGGAAAAGGTCTATATCTC < 41bp 0.43900518926844 0.706023357997544 0.14629406 0.18754011 prediction 0.412046715995088 Functional Gain - ADAM7 ENSG00000069206 CDS Human protein_coding chr8:24356775 chr8:24356777 nonsynonymous SNV 0.012 0 23 hm5C_associated_SNPs_126716 0 0 0 0 2 ADAM7 chr8:24356829 5'GT 24356829 Upstream 53bp
chr14 24647370 24647370 1 + A G UCEC 24647367 + 24647347 24647387 41 ACTGTTCTGGGACAAGGAGACTCAGATCTCCCCGGAGAAAT ACTGTTCTGGGACAAGGAGACTCGGATCTCCCCGGAGAAAT < 41bp 0.606833123003567 0.812840699824744 0.7071245 0.778669 prediction 0.412015153642354 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24647367 chr14:24647370 nonsynonymous SNV 0.988 1 24 hm5C_associated_SNPs_126720 0 0 1 0 2 REC8 chr14:24647297 3'AG 24647297 Downstream 74bp
chr14 24647370 24647370 1 + A G UCEC 24647367 + 24647347 24647387 41 ACTGTTCTGGGACAAGGAGACTCAGATCTCCCCGGAGAAAT ACTGTTCTGGGACAAGGAGACTCGGATCTCCCCGGAGAAAT < 41bp 0.606833123003567 0.812840699824744 0.7071245 0.778669 prediction 0.412015153642354 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24647367 chr14:24647370 nonsynonymous SNV 0.988 1 24 hm5C_associated_SNPs_126720 0 0 1 0 2 REC8 chr14:24647428 5'GT 24647428 Upstream 59bp
chr6 29911114 29911114 1 - G A rs3173420 29911115 - 29911095 29911135 41 TTGCCGTCGTAGGCGTCCTGCCGGTACCCGCGGAGGAAGCG TTGCCGTCGTAGGCGTCCTGCTGGTACCCGCGGAGGAAGCG < 41bp 0.516475267774018 0.722472835747245 0.18474868 0.120459944 prediction 0.411995135946455 Functional Gain - HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911115 chr6:29911114 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_126726 0 0 0 0 1 HLA-A chr6:29911028 5'GT 29911028 Upstream 87bp
chr17 61684733 61684733 1 + T C BLCA 61684730 + 61684710 61684750 41 GGAGGACAGAGAGAAGAAGGCTGTGAACCTAGAGCGTGCCC GGAGGACAGAGAGAAGAAGGCTGCGAACCTAGAGCGTGCCC < 41bp 0.551370636922036 0.757363944216461 0.09241083 0.10360038 prediction 0.411986614588851 Functional Gain - TACO1 ENSG00000136463 CDS Human protein_coding chr17:61684730 chr17:61684733 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_126727 0 0 1 0 2 TACO1 chr17:61684647 3'AG 61684647 Downstream 87bp
chr17 61684733 61684733 1 + T C BLCA 61684730 + 61684710 61684750 41 GGAGGACAGAGAGAAGAAGGCTGTGAACCTAGAGCGTGCCC GGAGGACAGAGAGAAGAAGGCTGCGAACCTAGAGCGTGCCC < 41bp 0.551370636922036 0.757363944216461 0.09241083 0.10360038 prediction 0.411986614588851 Functional Gain - TACO1 ENSG00000136463 CDS Human protein_coding chr17:61684730 chr17:61684733 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_126727 0 0 1 0 2 TACO1 chr17:61684824 5'GT 61684824 Upstream 92bp
chr7 150389501 150389501 1 + C T SKCM 150389500 + 150389480 150389520 41 AGTGCTGCAGGGAACAGCATCCTCAGGAAGCAAGCATTTGA AGTGCTGCAGGGAACAGCATCTTCAGGAAGCAAGCATTTGA < 41bp 0.445475025105086 0.705990260180137 0.11003098 0.17298803 prediction 0.411980520360273 Functional Gain - GIMAP2 ENSG00000106560 CDS Human protein_coding chr7:150389500 chr7:150389501 nonsynonymous SNV 0.681 4 22 hm5C_associated_SNPs_126728 0 0 0 0 1 GIMAP2 chr7:150389403 3'AG 150389403 Downstream 99bp
chr7 6182606 6182606 1 + C T CESC 6182605 + 6182585 6182625 41 CATTGGAGCAGTTTGTGAAGCCGGAACAGCTTGATGGAGAA CATTGGAGCAGTTTGTGAAGCTGGAACAGCTTGATGGAGAA < 41bp 0.626550293259514 0.832538036129381 0.1837171 0.2515994 prediction 0.411975485739734 Functional Gain - USP42 ENSG00000106346 CDS Human protein_coding chr7:6182605 chr7:6182606 nonsynonymous SNV 0.988 4 22 hm5C_associated_SNPs_126729 0 0 1 0 2 USP42 chr7:6182563 3'AG 6182563 Downstream 44bp
chr7 6182606 6182606 1 + C T CESC 6182605 + 6182585 6182625 41 CATTGGAGCAGTTTGTGAAGCCGGAACAGCTTGATGGAGAA CATTGGAGCAGTTTGTGAAGCTGGAACAGCTTGATGGAGAA < 41bp 0.626550293259514 0.832538036129381 0.1837171 0.2515994 prediction 0.411975485739734 Functional Gain - USP42 ENSG00000106346 CDS Human protein_coding chr7:6182605 chr7:6182606 nonsynonymous SNV 0.988 4 22 hm5C_associated_SNPs_126729 0 0 1 0 2 USP42 chr7:6182645 5'GT 6182645 Upstream 40bp
chr3 5246761 5246761 1 + T C LIHC 5246759 + 5246739 5246779 41 TTTATTTTTGCAGGCAATGTCGTGAACATTCAGACGGGCCA TTTATTTTTGCAGGCAATGTCGCGAACATTCAGACGGGCCA < 41bp 0.667849674963774 0.873837334376858 0.62297565 0.50491095 prediction 0.411975318826168 Functional Gain - EDEM1 ENSG00000134109 CDS Human protein_coding chr3:5246759 chr3:5246761 nonsynonymous SNV 0.890 2 23 hm5C_associated_SNPs_126730 0 0 1 0 1 EDEM1 chr3:5246752 3'AG 5246752 Downstream 10bp
chr19 54137883 54137883 1 + C A UCEC 54137882 + 54137862 54137902 41 AATGAGAACCCATACCCAAACCCCAGCCTTCAGAAAGAAAT AATGAGAACCCATACCCAAACACCAGCCTTCAGAAAGAAAT < 41bp 0.443041544786586 0.70598599587174 0.052179426 0.029738218 prediction 0.411971991743481 Functional Gain - DPRX ENSG00000204595 CDS Human protein_coding chr19:54137882 chr19:54137883 nonsynonymous SNV 0.930 1 22 hm5C_associated_SNPs_126731 0 0 0 0 2 DPRX chr19:54137785 3'AG 54137785 Downstream 99bp
chr19 54137883 54137883 1 + C A UCEC 54137882 + 54137862 54137902 41 AATGAGAACCCATACCCAAACCCCAGCCTTCAGAAAGAAAT AATGAGAACCCATACCCAAACACCAGCCTTCAGAAAGAAAT < 41bp 0.443041544786586 0.70598599587174 0.052179426 0.029738218 prediction 0.411971991743481 Functional Gain - DPRX ENSG00000204595 CDS Human protein_coding chr19:54137882 chr19:54137883 nonsynonymous SNV 0.930 1 22 hm5C_associated_SNPs_126731 0 0 0 0 2 DPRX chr19:54137939 5'GT 54137939 Upstream 57bp
chr1 46032600 46032600 1 + C T COAD 46032599 + 46032579 46032619 41 GTGGAACACCAAGCACCACCCCGAGGATGTGGAGCCTGCCC GTGGAACACCAAGCACCACCCTGAGGATGTGGAGCCTGCCC < 41bp 0.611929630714986 0.817915542998487 0.37946737 0.13621822 prediction 0.411971824567002 Functional Gain - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46032599 chr1:46032600 synonymous SNV . 0 22 hm5C_associated_SNPs_126732 0 0 1 0 2 AKR1A1 chr1:46032541 3'AG 46032541 Downstream 60bp
chr1 46032600 46032600 1 + C T COAD 46032599 + 46032579 46032619 41 GTGGAACACCAAGCACCACCCCGAGGATGTGGAGCCTGCCC GTGGAACACCAAGCACCACCCTGAGGATGTGGAGCCTGCCC < 41bp 0.611929630714986 0.817915542998487 0.37946737 0.13621822 prediction 0.411971824567002 Functional Gain - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46032599 chr1:46032600 synonymous SNV . 0 22 hm5C_associated_SNPs_126732 0 0 1 0 2 AKR1A1 chr1:46032692 5'GT 46032692 Upstream 93bp
chr1 44446826 44446826 1 + C G STAD 44446825 + 44446805 44446845 41 ACTGGGCGGGCCAGTGGCCGCCTGCGGGATGAGCAGACTGC ACTGGGCGGGCCAGTGGCCGCGTGCGGGATGAGCAGACTGC < 41bp 0.552012109930036 0.757987919573609 0.19883117 0.2535379 prediction 0.411951619287145 Functional Gain - B4GALT2 ENSG00000117411 CDS Human protein_coding chr1:44446825 chr1:44446826 synonymous SNV . 0 22 hm5C_associated_SNPs_126735 0 0 1 0 1 B4GALT2 chr1:44446781 3'AG 44446781 Downstream 46bp
chr16 66429972 66429972 1 + C T GBM 66429971 + 66429951 66429991 41 CCCCTGGGCAGATACTCCATCCGCAGGACCAGTGACAAGGG CCCCTGGGCAGATACTCCATCTGCAGGACCAGTGACAAGGG < 41bp 0.438472059753674 0.705965607238747 0.029640079 0.09491429 prediction 0.411931214477495 Functional Gain - CDH5 ENSG00000179776 CDS Human protein_coding chr16:66429971 chr16:66429972 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_126737 0 0 0 0 1 CDH5 chr16:66429962 3'AG 66429962 Downstream 11bp
chrX 50094342 50094342 1 + A G LAML 50094339 + 50094319 50094359 41 CTTTCAGTTCTTACGATAGTCTCAAGGCTGTGTATTACAAG CTTTCAGTTCTTACGATAGTCTCGAGGCTGTGTATTACAAG < 41bp 0.583333273546613 0.789298696080294 0.07142526 0.44328338 prediction 0.411930845067362 Functional Gain - CCNB3 ENSG00000147082 CDS Human protein_coding chrX:50094339 chrX:50094342 nonsynonymous SNV 0.021 1 24 hm5C_associated_SNPs_126738 0 0 0 0 1 CCNB3 chrX:50094370 5'GT 50094370 Upstream 29bp
chr3 180667072 180667072 1 + A G LUSC 180667069 + 180667049 180667089 41 TCTTAAGTGACATGCATTTGCGAAGTATTCGTACGAAGTTG TCTTAAGTGACATGCATTTGCGAGGTATTCGTACGAAGTTG < 41bp 0.588543043576559 0.794505802020132 0.55834484 0.9032775 prediction 0.411925516887147 Functional Gain - FXR1 ENSG00000114416 CDS Human protein_coding chr3:180667069 chr3:180667072 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_126741 0 0 1 0 2 FXR1 chr3:180667015 3'AG 180667015 Downstream 58bp
chr3 180667072 180667072 1 + A G LUSC 180667069 + 180667049 180667089 41 TCTTAAGTGACATGCATTTGCGAAGTATTCGTACGAAGTTG TCTTAAGTGACATGCATTTGCGAGGTATTCGTACGAAGTTG < 41bp 0.588543043576559 0.794505802020132 0.55834484 0.9032775 prediction 0.411925516887147 Functional Gain - FXR1 ENSG00000114416 CDS Human protein_coding chr3:180667069 chr3:180667072 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_126741 0 0 1 0 2 FXR1 chr3:180667131 5'GT 180667131 Upstream 60bp
chr21 27066109 27066109 1 + C T THYM 27066108 + 27066088 27066128 41 GAGATGATAGATTTCAATATCCGGATCAAAAATGTGACAAG GAGATGATAGATTTCAATATCTGGATCAAAAATGTGACAAG < 41bp 0.61796646512078 0.823927997607961 0.67084664 0.2263985 prediction 0.411923064974362 Functional Gain - JAM2 ENSG00000154721 CDS Human protein_coding chr21:27066108 chr21:27066109 nonsynonymous SNV 0.979 2 22 hm5C_associated_SNPs_126742 0 0 1 2 1 JAM2 chr21:27066068 3'AG 27066068 Downstream 42bp
chr20 61468607 61468607 1 + C T rs138477294 61468606 + 61468586 61468626 41 CACTGGGGAGCTGGGAGACCCCGGGCCCAGAGGTGAGTGTT CACTGGGGAGCTGGGAGACCCTGGGCCCAGAGGTGAGTGTT < 41bp 0.470482777285864 0.705958182424767 0.9052148 0.8878078 prediction 0.411916364849534 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61468606 chr20:61468607 synonymous SNV . 0 22 hm5C_associated_SNPs_126744 1 0 1 0 1 COL9A3 chr20:61468617 5'GT 61468617 Upstream 11bp
chr9 131262415 131262415 1 + C A rs144331164 131262414 + 131262394 131262434 41 GAGCAGTCCGAGAGCACCAACCGCAGCATGCAGAACTACGT GAGCAGTCCGAGAGCACCAACAGCAGCATGCAGAACTACGT < 41bp 0.471593679233312 0.705956962701603 0.37728557 0.29910916 prediction 0.411913925403205 Functional Gain - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131262414 chr9:131262415 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_126745 0 0 1 0 1 ODF2 chr9:131262346 3'AG 131262346 Downstream 70bp
chr2 171710463 171710463 1 + C T UCEC 171710462 + 171710442 171710482 41 GTATGATGTCTCCTACGACACCGGGGACAAGGCAATTCAGT GTATGATGTCTCCTACGACACTGGGGACAAGGCAATTCAGT < 41bp 0.608856945439749 0.814806871449392 0.29422536 0.1640105 prediction 0.411899852019286 Functional Gain - GAD1 ENSG00000128683 CDS Human protein_coding chr2:171710462 chr2:171710463 synonymous SNV . 0 22 hm5C_associated_SNPs_126748 0 0 0 0 1 GAD1 chr2:171710532 5'GT 171710532 Upstream 70bp
chr19 57743127 57743127 1 + A G STAD 57743124 + 57743104 57743144 41 TTTCAGTGGCTACAGCAAACCAAACAGCCCAGCAGCCCAGC TTTCAGTGGCTACAGCAAACCAAGCAGCCCAGCAGCCCAGC < 41bp 0.451871414265025 0.705946046961234 0.18606302 0.26977605 prediction 0.411892093922469 Functional Gain - AURKC ENSG00000105146 CDS Human protein_coding chr19:57743124 chr19:57743127 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_126750 0 0 1 0 3 AURKC chr19:57743110 3'AG 57743110 Downstream 18bp
chr19 57743127 57743127 1 + A G STAD 57743124 + 57743104 57743144 41 TTTCAGTGGCTACAGCAAACCAAACAGCCCAGCAGCCCAGC TTTCAGTGGCTACAGCAAACCAAGCAGCCCAGCAGCCCAGC < 41bp 0.451871414265025 0.705946046961234 0.18606302 0.26977605 prediction 0.411892093922469 Functional Gain - AURKC ENSG00000105146 CDS Human protein_coding chr19:57743124 chr19:57743127 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_126750 0 0 1 0 3 AURKC chr19:57743119 3'AG 57743119 Downstream 9bp
chr19 57743127 57743127 1 + A G STAD 57743124 + 57743104 57743144 41 TTTCAGTGGCTACAGCAAACCAAACAGCCCAGCAGCCCAGC TTTCAGTGGCTACAGCAAACCAAGCAGCCCAGCAGCCCAGC < 41bp 0.451871414265025 0.705946046961234 0.18606302 0.26977605 prediction 0.411892093922469 Functional Gain - AURKC ENSG00000105146 CDS Human protein_coding chr19:57743124 chr19:57743127 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_126750 0 0 1 0 3 AURKC chr19:57743155 5'GT 57743155 Upstream 29bp
chr4 123329126 123329126 1 + C T COAD 123329125 + 123329105 123329145 41 ATTACAGCCAGGACATTAAGCCAGATGGAAGAGTATTGCAT ATTACAGCCAGGACATTAAGCTAGATGGAAGAGTATTGCAT < 41bp 0.621725643381749 0.827665617401994 0.39748123 0.09648794 prediction 0.411879948040489 Functional Gain - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123329125 chr4:123329126 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_126752 0 0 0 0 2 ADAD1 chr4:123329063 3'AG 123329063 Downstream 64bp
chr4 123329126 123329126 1 + C T COAD 123329125 + 123329105 123329145 41 ATTACAGCCAGGACATTAAGCCAGATGGAAGAGTATTGCAT ATTACAGCCAGGACATTAAGCTAGATGGAAGAGTATTGCAT < 41bp 0.621725643381749 0.827665617401994 0.39748123 0.09648794 prediction 0.411879948040489 Functional Gain - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123329125 chr4:123329126 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_126752 0 0 0 0 2 ADAD1 chr4:123329186 5'GT 123329186 Upstream 61bp
chr14 23564766 23564766 1 + C G rs17126531 23564765 + 23564745 23564785 41 TTCAGGAAATTTGGAAGCTGCCGCAGTAGTTGGAGTCTAAG TTCAGGAAATTTGGAAGCTGCGGCAGTAGTTGGAGTCTAAG < 41bp 0.436908504923528 0.705929123890268 0.77118474 0.8894274 prediction 0.411858247780535 Functional Gain - ACIN1;C14orf119 ENSG00000100813;ENSG00000179933 UTR5 Human protein_coding chr14:23564765 chr14:23564766 . . 0 22 hm5C_associated_SNPs_126755 0 0 1 0 1 C14orf119 chr14:23564828 5'GT 23564828 Upstream 63bp
chr2 171687621 171687621 1 + T G STAD 171687617 + 171687597 171687637 41 CTGGAAGGCATGGAGGGCTTCAACTTGGAGCTCTCTGACCA CTGGAAGGCATGGAGGGCTTCAACGTGGAGCTCTCTGACCA < 41bp 0.516950719178065 0.722876259440963 0.28215402 0.556107 prediction 0.411851080525796 Functional Gain - GAD1 ENSG00000128683 CDS Human protein_coding chr2:171687617 chr2:171687621 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_126757 0 0 0 0 1 GAD1 chr2:171687702 5'GT 171687702 Upstream 82bp
chr11 123988407 123988407 1 + T C STAD 123988405 + 123988385 123988425 41 CTGAAGAGTATCTCTGTGAGCGTGAACATTTACGAGTTTGT CTGAAGAGTATCTCTGTGAGCGCGAACATTTACGAGTTTGT < 41bp 0.417282094713988 0.705924852078953 0.059694976 0.07435086 prediction 0.411849704157905 Functional Gain - VWA5A ENSG00000110002 CDS Human protein_coding chr11:123988405 chr11:123988407 nonsynonymous SNV 0.027 0 23 hm5C_associated_SNPs_126758 0 0 1 0 1 VWA5A chr11:123988380 3'AG 123988380 Downstream 28bp
chr8 106811100 106811100 1 + C A LUAD 106811096 + 106811076 106811116 41 AGACAGTGCCCATCAGATTTCCAGCCTGTGCCCCTTCCCAC AGACAGTGCCCATCAGATTTCCAGACTGTGCCCCTTCCCAC < 41bp 0.309174571244357 0.705922707900758 0.034742385 0.28117388 prediction 0.411845415801517 Functional Gain - ZFPM2 ENSG00000169946 CDS Human protein_coding chr8:106811096 chr8:106811100 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_126760 0 0 0 0 1 ZFPM2 chr8:106811176 5'GT 106811176 Upstream 77bp
chr1 50610816 50610816 1 + T G ESCA 50610814 + 50610794 50610834 41 CAAGAAGAATTCAGGAGTCTCTTCGGGAGCATTGGTGAAAT CAAGAAGAATTCAGGAGTCTCTGCGGGAGCATTGGTGAAAT < 41bp 0.378611184264604 0.70592141964999 0.27337143 0.6694875 prediction 0.411842839299979 Functional Gain - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50610814 chr1:50610816 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_126762 0 0 0 0 1 ELAVL4 chr1:50610869 5'GT 50610869 Upstream 54bp
chr17 66042674 66042674 1 + C A BLCA 66042673 + 66042653 66042693 41 ACCTCTGAAGGCTACACTTTCCAAGTTCAGGATGGGGCTCC ACCTCTGAAGGCTACACTTTCAAAGTTCAGGATGGGGCTCC < 41bp 0.444282663341034 0.705910123268823 0.30263108 0.79628056 prediction 0.411820246537646 Functional Gain - KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66042673 chr17:66042674 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_126765 0 0 1 0 1 KPNA2 chr17:66042620 3'AG 66042620 Downstream 55bp
chr19 54625258 54625258 1 + C T STAD 54625257 + 54625237 54625277 41 AGTGATGGGACCAGTGGAGGCCGCGCCTGAATACCGCGTCA AGTGATGGGACCAGTGGAGGCTGCGCCTGAATACCGCGTCA < 41bp 0.599418820732973 0.805326253588879 0.28286338 0.2377463 prediction 0.411814865711812 Functional Gain - PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54625257 chr19:54625258 synonymous SNV . 0 22 hm5C_associated_SNPs_126766 0 0 1 0 2 PRPF31 chr19:54625239 3'AG 54625239 Downstream 20bp
chr19 54625258 54625258 1 + C T STAD 54625257 + 54625237 54625277 41 AGTGATGGGACCAGTGGAGGCCGCGCCTGAATACCGCGTCA AGTGATGGGACCAGTGGAGGCTGCGCCTGAATACCGCGTCA < 41bp 0.599418820732973 0.805326253588879 0.28286338 0.2377463 prediction 0.411814865711812 Functional Gain - PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54625257 chr19:54625258 synonymous SNV . 0 22 hm5C_associated_SNPs_126766 0 0 1 0 2 PRPF31 chr19:54625322 5'GT 54625322 Upstream 65bp
chr3 39430993 39430993 1 + C T STAD 39430992 + 39430972 39431012 41 GTCTTATCCTGCAGTTACATCCGGTGATCAAGGCTTTCCTG GTCTTATCCTGCAGTTACATCTGGTGATCAAGGCTTTCCTG < 41bp 0.590121503254682 0.79602552899305 0.92818904 0.4218492 prediction 0.411808051476737 Functional Gain - SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39430992 chr3:39430993 nonsynonymous SNV 0.042 4 22 hm5C_associated_SNPs_126768 0 0 1 0 1 SLC25A38 chr3:39430986 3'AG 39430986 Downstream 8bp
chr1 212792438 212792438 1 + A G COAD 212792435 + 212792415 212792455 41 ACCTGCATATGGGCTGTTGACTCATGCAAATGAGGTATCTG ACCTGCATATGGGCTGTTGACTCGTGCAAATGAGGTATCTG < 41bp 0.474141947408731 0.70590117987957 0.32853866 0.25230682 prediction 0.411802359759139 Functional Gain - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212792435 chr1:212792438 synonymous SNV . 0 24 hm5C_associated_SNPs_126769 0 0 1 2 1 ATF3 chr1:212792388 3'AG 212792388 Downstream 51bp
chr16 70349956 70349956 1 - G T THCA 70349957 - 70349937 70349977 41 TACAGAGGGGAGTTTGGATCCCGCTGCAGGACTTCCACTTG TACAGAGGGGAGTTTGGATCCAGCTGCAGGACTTCCACTTG < 41bp 0.625946654298045 0.831842117620782 0.255634 0.37395585 prediction 0.411790926645473 Functional Gain - DDX19B ENSG00000157349;ENSG00000260537 CDS Human processed_transcript chr16:70349957 chr16:70349956 nonsynonymous SNV 0.999 0 22 hm5C_associated_SNPs_126772 0 0 0 0 1 LOC100506083 chr16:70350045 3'AG 70350045 Downstream 90bp
chr8 92330587 92330587 1 + C A LUAD 92330586 + 92330566 92330606 41 AATGAAAATGCCATATATATCCGGACCACTTGGATTCTTTT AATGAAAATGCCATATATATCAGGACCACTTGGATTCTTTT < 41bp 0.445782129183649 0.705892993938959 0.6363467 0.9055543 prediction 0.411785987877918 Functional Gain - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92330586 chr8:92330587 synonymous SNV . 0 22 hm5C_associated_SNPs_126773 0 0 0 1 1 SLC26A7 chr8:92330608 5'GT 92330608 Upstream 22bp
chr19 35644855 35644855 1 + T C rs62111370 35644853 + 35644833 35644873 41 AAACTCCGCTGCCGACCCTGCCTGAGCGCGGGAGCCTGAGG AAACTCCGCTGCCGACCCTGCCCGAGCGCGGGAGCCTGAGG < 41bp 0.603767870861913 0.809648305712248 0.058823228 0.12867522 prediction 0.41176086970067 Functional Gain - FXYD7 ENSG00000221946 UTR3 Human protein_coding chr19:35644853 chr19:35644855 . . 0 23 hm5C_associated_SNPs_126777 0 0 0 0 1 FXYD7 chr19:35644797 3'AG 35644797 Downstream 59bp
chr3 126445989 126445989 1 + C A PRAD 126445985 + 126445965 126446005 41 ACCCCCTGCTCCCACATCTTCTACCTTTGGCCTTCAAGATG ACCCCCTGCTCCCACATCTTCTACATTTGGCCTTCAAGATG < 41bp 0.274719370382517 0.705880246997735 0.014547855 0.13025805 prediction 0.41176049399547 Functional Gain - CHCHD6 ENSG00000159685 CDS Human protein_coding chr3:126445985 chr3:126445989 synonymous SNV . 0 25 hm5C_associated_SNPs_126778 0 0 1 0 2 CHCHD6 chr3:126445921 3'AG 126445921 Downstream 69bp
chr3 126445989 126445989 1 + C A PRAD 126445985 + 126445965 126446005 41 ACCCCCTGCTCCCACATCTTCTACCTTTGGCCTTCAAGATG ACCCCCTGCTCCCACATCTTCTACATTTGGCCTTCAAGATG < 41bp 0.274719370382517 0.705880246997735 0.014547855 0.13025805 prediction 0.41176049399547 Functional Gain - CHCHD6 ENSG00000159685 CDS Human protein_coding chr3:126445985 chr3:126445989 synonymous SNV . 0 25 hm5C_associated_SNPs_126778 0 0 1 0 2 CHCHD6 chr3:126446029 5'GT 126446029 Upstream 41bp
chr17 18284994 18284994 1 + C A rs375675716 18284993 + 18284973 18285013 41 ACGAGAAGATGGTGCTGCCGCCCCGACGTGGGATCCAAGGT ACGAGAAGATGGTGCTGCCGCACCGACGTGGGATCCAAGGT < 41bp 0.438440208758129 0.70587897925738 0.16049123 0.20508587 prediction 0.411757958514761 Functional Gain - EVPLL ENSG00000214860 CDS Human protein_coding chr17:18284993 chr17:18284994 nonsynonymous SNV 0.932 2 22 hm5C_associated_SNPs_126780 0 0 0 0 2 EVPLL chr17:18284917 3'AG 18284917 Downstream 78bp
chr17 18284994 18284994 1 + C A rs375675716 18284993 + 18284973 18285013 41 ACGAGAAGATGGTGCTGCCGCCCCGACGTGGGATCCAAGGT ACGAGAAGATGGTGCTGCCGCACCGACGTGGGATCCAAGGT < 41bp 0.438440208758129 0.70587897925738 0.16049123 0.20508587 prediction 0.411757958514761 Functional Gain - EVPLL ENSG00000214860 CDS Human protein_coding chr17:18284993 chr17:18284994 nonsynonymous SNV 0.932 2 22 hm5C_associated_SNPs_126780 0 0 0 0 2 EVPLL chr17:18285044 5'GT 18285044 Upstream 51bp
chr15 29397678 29397678 1 + A G BRCA 29397675 + 29397655 29397695 41 TCAACCCCGAAGACTTGAGCCAGAAGGAATACAGCGACATC TCAACCCCGAAGACTTGAGCCAGGAGGAATACAGCGACATC < 41bp 0.589606968065621 0.795484715864398 0.13828456 0.26458532 prediction 0.411755495597554 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29397675 chr15:29397678 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_126781 0 0 1 0 2 APBA2 chr15:29397582 3'AG 29397582 Downstream 97bp
chr15 29397678 29397678 1 + A G BRCA 29397675 + 29397655 29397695 41 TCAACCCCGAAGACTTGAGCCAGAAGGAATACAGCGACATC TCAACCCCGAAGACTTGAGCCAGGAGGAATACAGCGACATC < 41bp 0.589606968065621 0.795484715864398 0.13828456 0.26458532 prediction 0.411755495597554 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29397675 chr15:29397678 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_126781 0 0 1 0 2 APBA2 chr15:29397761 5'GT 29397761 Upstream 84bp
chr8 67590131 67590131 1 + A G BLCA 67590128 + 67590108 67590148 41 ATCACCTGAGGTCAGGAGTTCGAAACCAGCCTGGCCAACAT ATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACAT < 41bp 0.615301538819281 0.821178410529471 0.36667615 0.8525522 prediction 0.411753743420382 Functional Gain - C8orf44 ENSG00000213865 CDS Human protein_coding chr8:67590128 chr8:67590131 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_126782 0 0 0 0 1 C8orf44 chr8:67590189 5'GT 67590189 Upstream 59bp
chr3 119445068 119445068 1 + C T STAD 119445067 + 119445047 119445087 41 GTGGAGATGATAGAAAGAGCCCGCGAGAAGCGTGCTTGGGA GTGGAGATGATAGAAAGAGCCTGCGAGAAGCGTGCTTGGGA < 41bp 0.618155133504279 0.824031446896226 0.30165815 0.24426615 prediction 0.411752626783894 Functional Gain - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119445067 chr3:119445068 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_126783 0 0 0 0 1 MAATS1 chr3:119445018 3'AG 119445018 Downstream 51bp
chr1 156347926 156347926 1 + C T SKCM 156347925 + 156347905 156347945 41 GAGTTTGTGCTCCTTCATCTCCTGGGGGTGAGAGTCTGGGG GAGTTTGTGCTCCTTCATCTCTTGGGGGTGAGAGTCTGGGG < 41bp 0.597820060535823 0.803694233652991 0.39922878 0.19675708 prediction 0.411748346234334 Functional Gain - RHBG ENSG00000132677 CDS Human protein_coding chr1:156347925 chr1:156347926 synonymous SNV . 0 22 hm5C_associated_SNPs_126784 0 0 1 1 1 RHBG chr1:156347931 5'GT 156347931 Upstream 6bp
chr1 231337141 231337141 1 + A G UCEC 231337138 + 231337118 231337158 41 GATCAAGCGCGTCCAGGTGTCTCAGGAGCAGTGGGTCAAAG GATCAAGCGCGTCCAGGTGTCTCGGGAGCAGTGGGTCAAAG < 41bp 0.587744808725129 0.793615333280713 0.31297806 0.46379024 prediction 0.411741049111168 Functional Gain - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231337138 chr1:231337141 nonsynonymous SNV 0.989 2 24 hm5C_associated_SNPs_126786 0 0 0 0 1 TRIM67 chr1:231337104 3'AG 231337104 Downstream 38bp
chr8 21958400 21958400 1 + C T rs138222967 21958399 + 21958379 21958419 41 CACCGACAGCTTCCTGGATTCCGGCTTTCAAACTCCCGCAA CACCGACAGCTTCCTGGATTCTGGCTTTCAAACTCCCGCAA < 41bp 0.456427467722208 0.705869529705995 0.13855407 0.08103326 prediction 0.41173905941199 Functional Gain - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21958399 chr8:21958400 synonymous SNV . 0 22 hm5C_associated_SNPs_126788 0 0 1 0 2 FAM160B2 chr8:21958355 3'AG 21958355 Downstream 46bp
chr8 21958400 21958400 1 + C T rs138222967 21958399 + 21958379 21958419 41 CACCGACAGCTTCCTGGATTCCGGCTTTCAAACTCCCGCAA CACCGACAGCTTCCTGGATTCTGGCTTTCAAACTCCCGCAA < 41bp 0.456427467722208 0.705869529705995 0.13855407 0.08103326 prediction 0.41173905941199 Functional Gain - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21958399 chr8:21958400 synonymous SNV . 0 22 hm5C_associated_SNPs_126788 0 0 1 0 2 FAM160B2 chr8:21958483 5'GT 21958483 Upstream 84bp
chr5 1034410 1034410 1 + T C LUAD 1034407 + 1034387 1034427 41 GCCAGGAGTGGACGTTCACGCTCTATGACTTTGACAACTGC GCCAGGAGTGGACGTTCACGCTCCATGACTTTGACAACTGC < 41bp 0.569221262427845 0.77508429861589 0.6422161 0.88458323 prediction 0.41172607237609 Functional Gain - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1034407 chr5:1034410 nonsynonymous SNV 0.026 4 24 hm5C_associated_SNPs_126789 0 0 0 0 2 NKD2 chr5:1034350 3'AG 1034350 Downstream 61bp
chr5 1034410 1034410 1 + T C LUAD 1034407 + 1034387 1034427 41 GCCAGGAGTGGACGTTCACGCTCTATGACTTTGACAACTGC GCCAGGAGTGGACGTTCACGCTCCATGACTTTGACAACTGC < 41bp 0.569221262427845 0.77508429861589 0.6422161 0.88458323 prediction 0.41172607237609 Functional Gain - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1034407 chr5:1034410 nonsynonymous SNV 0.026 4 24 hm5C_associated_SNPs_126789 0 0 0 0 2 NKD2 chr5:1034445 5'GT 1034445 Upstream 36bp
chr11 134181026 134181026 1 + T C UCEC 134181023 + 134181003 134181043 41 ATCCCCCCGTGAGACCGTCGCTGTACCTCCCGCTGTGGGAC ATCCCCCCGTGAGACCGTCGCTGCACCTCCCGCTGTGGGAC < 41bp 0.559367244561526 0.765220927323314 0.55679566 0.6807239 prediction 0.411707365523574 Functional Gain - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134181023 chr11:134181026 nonsynonymous SNV 0.026 1 24 hm5C_associated_SNPs_126792 0 0 0 0 1 GLB1L3 chr11:134180958 3'AG 134180958 Downstream 69bp
chr20 35835810 35835810 1 + T C GBM 35835808 + 35835788 35835828 41 ACGTGCCAGTTGTGGTTGTGCCTGAGGGCTCTGCTTCCGAC ACGTGCCAGTTGTGGTTGTGCCCGAGGGCTCTGCTTCCGAC < 41bp 0.671201254167081 0.877048893476703 0.054295152 0.041061074 prediction 0.411695278619244 Functional Gain - RPN2 ENSG00000118705 CDS Human protein_coding chr20:35835808 chr20:35835810 synonymous SNV . 0 23 hm5C_associated_SNPs_126794 0 0 1 0 1 RPN2 chr20:35835852 5'GT 35835852 Upstream 43bp
chrX 152027348 152027348 1 + T C UCEC 152027345 + 152027325 152027365 41 AGCTCTGAAAGGTGTAAACACAGTTTTCCACTGTGCGTCAC AGCTCTGAAAGGTGTAAACACAGCTTTCCACTGTGCGTCAC < 41bp 0.547057112075188 0.752901026313235 0.30891615 0.30160505 prediction 0.411687828476095 Functional Gain - NSDHL ENSG00000147383 CDS Human protein_coding chrX:152027345 chrX:152027348 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_126795 0 0 1 0 1 NSDHL chrX:152027314 3'AG 152027314 Downstream 35bp
chr1 223940633 223940633 1 + C T COAD 223940632 + 223940612 223940652 41 GAACTGGAGGCGGGGCTCCACCGCGGGAGGTTGCAGGAACT GAACTGGAGGCGGGGCTCCACTGCGGGAGGTTGCAGGAACT < 41bp 0.468621162806936 0.705843345639713 0.83663344 0.7813808 prediction 0.411686691279426 Functional Gain - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223940632 chr1:223940633 synonymous SNV . 0 22 hm5C_associated_SNPs_126796 0 0 1 0 1 CAPN2 chr1:223940658 5'GT 223940658 Upstream 26bp
chr2 220072684 220072684 1 + C G UCEC 220072683 + 220072663 220072703 41 CTGACCTGTGAACGCTGTAGCCGAAACTTCTGCATCAAGCA CTGACCTGTGAACGCTGTAGCGGAAACTTCTGCATCAAGCA < 41bp 0.386475674711907 0.705839743770666 0.089797825 0.33739245 prediction 0.411679487541331 Functional Gain - ZFAND2B ENSG00000158552 CDS Human protein_coding chr2:220072683 chr2:220072684 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_126799 0 0 1 0 1 ZFAND2B chr2:220072609 3'AG 220072609 Downstream 76bp
chr3 38417713 38417713 1 + T C rs150775220 38417710 + 38417690 38417730 41 CAGTCCACAGAGATGGGCAACGGTGGAAACCTGGGTAGGCC CAGTCCACAGAGATGGGCAACGGCGGAAACCTGGGTAGGCC < 41bp 0.496434980592871 0.705835290802631 0.7157548 0.89266187 prediction 0.411670581605263 Functional Gain - XYLB ENSG00000093217 CDS Human protein_coding chr3:38417710 chr3:38417713 synonymous SNV . 0 24 hm5C_associated_SNPs_126800 0 0 1 0 1 XYLB chr3:38417723 5'GT 38417723 Upstream 11bp
chr14 100795362 100795362 1 + C G rs142537072 100795359 + 100795339 100795379 41 GTCCTCTGCGAGTGGCTCAGCCCCGCTGGCCACAGCCGGCC GTCCTCTGCGAGTGGCTCAGCCCGGCTGGCCACAGCCGGCC < 41bp 0.50681491306463 0.712641635825828 0.16393048 0.13194129 prediction 0.411653445522396 Functional Gain - SLC25A47 ENSG00000140107 CDS Human protein_coding chr14:100795359 chr14:100795362 synonymous SNV . 0 24 hm5C_associated_SNPs_126802 0 0 0 0 1 SLC25A47 chr14:100795381 5'GT 100795381 Upstream 20bp
chr4 74308069 74308069 1 + T G UCEC 74308065 + 74308045 74308085 41 TCCTGTATGCACCTACAATTCTTCTTTGGGCTGCTCGCTAT TCCTGTATGCACCTACAATTCTTCGTTGGGCTGCTCGCTAT < 41bp 0.516644506420922 0.722458983530507 0.011377633 0.016200483 prediction 0.411628954219171 Functional Gain - AFP ENSG00000081051 CDS Human protein_coding chr4:74308065 chr4:74308069 nonsynonymous SNV 0.016 0 25 hm5C_associated_SNPs_126804 0 0 1 0 2 AFP chr4:74308013 3'AG 74308013 Downstream 57bp
chr4 74308069 74308069 1 + T G UCEC 74308065 + 74308045 74308085 41 TCCTGTATGCACCTACAATTCTTCTTTGGGCTGCTCGCTAT TCCTGTATGCACCTACAATTCTTCGTTGGGCTGCTCGCTAT < 41bp 0.516644506420922 0.722458983530507 0.011377633 0.016200483 prediction 0.411628954219171 Functional Gain - AFP ENSG00000081051 CDS Human protein_coding chr4:74308065 chr4:74308069 nonsynonymous SNV 0.016 0 25 hm5C_associated_SNPs_126804 0 0 1 0 2 AFP chr4:74308145 5'GT 74308145 Upstream 77bp
chr16 11769893 11769893 1 + C G rs8191327 11769889 + 11769869 11769909 41 GGCCACCCCCAAAGTGCTGCCAGCCGAGGAAGCCCCCAGCA GGCCACCCCCAAAGTGCTGCCAGCGGAGGAAGCCCCCAGCA < 41bp 0.59427996933552 0.800089927096808 0.5025146 0.8133924 prediction 0.411619915522576 Functional Gain - SNN ENSG00000184602 UTR5 Human protein_coding chr16:11769889 chr16:11769893 . . 0 25 hm5C_associated_SNPs_126805 0 0 1 0 1 SNN chr16:11769831 3'AG 11769831 Downstream 63bp
chr17 25630642 25630642 1 + A G COAD 25630639 + 25630619 25630659 41 GGGTTGAACAATGGGCGTATCAAAATATGGGATGTATATAC GGGTTGAACAATGGGCGTATCAAGATATGGGATGTATATAC < 41bp 0.56282961874958 0.768638363241098 0.20777872 0.34377316 prediction 0.411617488983036 Functional Gain - WSB1 ENSG00000109046 CDS Human protein_coding chr17:25630639 chr17:25630642 synonymous SNV . 0 24 hm5C_associated_SNPs_126806 0 0 1 0 1 WSB1 chr17:25630661 5'GT 25630661 Upstream 20bp
chr2 241631393 241631393 1 + C A rs183808728 241631392 + 241631372 241631412 41 CTTCGCCCTCTGTGAGGCGGCCAGGCGGGCCTCCAAGGCCC CTTCGCCCTCTGTGAGGCGGCAAGGCGGGCCTCCAAGGCCC < 41bp 0.451821192227109 0.705807066210709 0.3374892 0.24654087 prediction 0.411614132421417 Functional Gain - AQP12A ENSG00000184945 CDS Human protein_coding chr2:241631392 chr2:241631393 synonymous SNV . 0 22 hm5C_associated_SNPs_126807 0 0 0 0 1 AQP12A chr2:241631453 5'GT 241631453 Upstream 61bp
chr6 117825024 117825024 1 + A G HNSC 117825021 + 117825001 117825041 41 TACCCCAATCACACTGTTTGCGAAAAGACAATTACAGTACC TACCCCAATCACACTGTTTGCGAGAAGACAATTACAGTACC < 41bp 0.559206749712052 0.765009588584218 0.0843052 0.43391705 prediction 0.411605677744332 Functional Gain - DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117825021 chr6:117825024 synonymous SNV . 0 24 hm5C_associated_SNPs_126808 0 0 1 0 1 DCBLD1 chr6:117824930 3'AG 117824930 Downstream 95bp
chr8 9623934 9623934 1 + A G COAD 9623931 + 9623911 9623951 41 ACAGGTCATGCTATATATGTCACAGGTAAGCATCTTGCCAT ACAGGTCATGCTATATATGTCACGGGTAAGCATCTTGCCAT < 41bp 0.470014226242822 0.705798081656749 0.23919776 0.5472684 prediction 0.411596163313497 Functional Gain - TNKS ENSG00000173273 CDS Human protein_coding chr8:9623931 chr8:9623934 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_126810 0 0 0 0 1 TNKS chr8:9623935 5'GT 9623935 Upstream 2bp
chr3 49742457 49742457 1 + T G UCEC 49742454 + 49742434 49742474 41 GGCTGTTGGGGGGCCACTGCCCCTGCCCCGGCCCGGCTGGC GGCTGTTGGGGGGCCACTGCCCCGGCCCCGGCCCGGCTGGC < 41bp 0.298863049371569 0.705794392662647 0.24422309 0.52540845 prediction 0.411588785325294 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49742454 chr3:49742457 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_126812 0 0 1 0 1 RNF123 chr3:49742417 3'AG 49742417 Downstream 41bp
chr11 61249803 61249803 1 + C T LIHC 61249802 + 61249782 61249822 41 GGTCGGGAGGATTTCAAGCCCCGTGTGGGCAGTCACGTAGG GGTCGGGAGGATTTCAAGCCCTGTGTGGGCAGTCACGTAGG < 41bp 0.461347784005476 0.705788777505566 0.16296864 0.14834887 prediction 0.411577555011132 Functional Gain - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61249802 chr11:61249803 nonsynonymous SNV 0.691 3 22 hm5C_associated_SNPs_126813 0 0 0 0 2 PPP1R32 chr11:61249783 3'AG 61249783 Downstream 21bp
chr11 61249803 61249803 1 + C T LIHC 61249802 + 61249782 61249822 41 GGTCGGGAGGATTTCAAGCCCCGTGTGGGCAGTCACGTAGG GGTCGGGAGGATTTCAAGCCCTGTGTGGGCAGTCACGTAGG < 41bp 0.461347784005476 0.705788777505566 0.16296864 0.14834887 prediction 0.411577555011132 Functional Gain - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61249802 chr11:61249803 nonsynonymous SNV 0.691 3 22 hm5C_associated_SNPs_126813 0 0 0 0 2 PPP1R32 chr11:61249900 5'GT 61249900 Upstream 98bp
chr12 32369322 32369322 1 + A G LIHC 32369319 + 32369299 32369339 41 AGATGCAGAACGAGCTGAAACAGAGCCGGGCTGTGGTCACT AGATGCAGAACGAGCTGAAACAGGGCCGGGCTGTGGTCACT < 41bp 0.618475342404683 0.824258488081148 0.8367628 0.90026945 prediction 0.411566291352929 Functional Gain - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32369319 chr12:32369322 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_126818 0 0 1 0 1 BICD1 chr12:32369393 5'GT 32369393 Upstream 72bp
chr3 196304421 196304421 1 + A G UCS 196304418 + 196304398 196304438 41 TTTACATCGAAACCCCATTGCTCAGAGCACTGATGGTGCAA TTTACATCGAAACCCCATTGCTCGGAGCACTGATGGTGCAA < 41bp 0.467054181947512 0.705777569985953 0.37383926 0.47505128 prediction 0.411555139971905 Functional Gain - FBXO45 ENSG00000174013 CDS Human protein_coding chr3:196304418 chr3:196304421 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_126821 0 0 1 0 1 FBXO45 chr3:196304324 3'AG 196304324 Downstream 98bp
chr1 53427248 53427248 1 + C A THCA 53427244 + 53427224 53427264 41 ATAAGTATGGATTGTCTGCTCACCCAGTTGCTCCTCAGATG ATAAGTATGGATTGTCTGCTCACCAAGTTGCTCCTCAGATG < 41bp 0.321084361443393 0.705775835160405 0.066596955 0.14731377 prediction 0.41155167032081 Functional Gain - SCP2 ENSG00000116171 CDS Human protein_coding chr1:53427244 chr1:53427248 nonsynonymous SNV 0.523 4 25 hm5C_associated_SNPs_126822 0 0 1 0 2 SCP2 chr1:53427175 3'AG 53427175 Downstream 74bp
chr1 53427248 53427248 1 + C A THCA 53427244 + 53427224 53427264 41 ATAAGTATGGATTGTCTGCTCACCCAGTTGCTCCTCAGATG ATAAGTATGGATTGTCTGCTCACCAAGTTGCTCCTCAGATG < 41bp 0.321084361443393 0.705775835160405 0.066596955 0.14731377 prediction 0.41155167032081 Functional Gain - SCP2 ENSG00000116171 CDS Human protein_coding chr1:53427244 chr1:53427248 nonsynonymous SNV 0.523 4 25 hm5C_associated_SNPs_126822 0 0 1 0 2 SCP2 chr1:53427301 5'GT 53427301 Upstream 54bp
chr19 54515286 54515286 1 + C T CESC 54515285 + 54515265 54515305 41 GAGTCAGCCCGGAGCCTCCCCCGGCCCCACGCCTCACCTAC GAGTCAGCCCGGAGCCTCCCCTGGCCCCACGCCTCACCTAC < 41bp 0.557003667614675 0.762769152314211 0.48177427 0.16747129 prediction 0.411530969399073 Functional Gain - CACNG6 ENSG00000130433 CDS Human protein_coding chr19:54515285 chr19:54515286 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_126825 0 0 0 0 1 CACNG6 chr19:54515205 3'AG 54515205 Downstream 82bp
chrX 69644849 69644849 1 + C T UCEC 69644848 + 69644828 69644868 41 CTTCACCATGGCCGAGTCCCCCGGCTGCTGCTCCGTCTGGG CTTCACCATGGCCGAGTCCCCTGGCTGCTGCTCCGTCTGGG < 41bp 0.569408466540941 0.775167847501795 0.71239233 0.34106138 prediction 0.411518761921707 Functional Gain - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69644848 chrX:69644849 synonymous SNV . 0 22 hm5C_associated_SNPs_126829 0 0 0 0 2 GDPD2 chrX:69644826 3'AG 69644826 Downstream 24bp
chrX 69644849 69644849 1 + C T UCEC 69644848 + 69644828 69644868 41 CTTCACCATGGCCGAGTCCCCCGGCTGCTGCTCCGTCTGGG CTTCACCATGGCCGAGTCCCCTGGCTGCTGCTCCGTCTGGG < 41bp 0.569408466540941 0.775167847501795 0.71239233 0.34106138 prediction 0.411518761921707 Functional Gain - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69644848 chrX:69644849 synonymous SNV . 0 22 hm5C_associated_SNPs_126829 0 0 0 0 2 GDPD2 chrX:69644939 5'GT 69644939 Upstream 91bp
chr9 124064424 124064424 1 + T C STAD 124064421 + 124064401 124064441 41 AGCTGAGGAACGGAAATCTGCAGTATGACCTCCACTACTGG AGCTGAGGAACGGAAATCTGCAGCATGACCTCCACTACTGG < 41bp 0.509844250723131 0.715595452570992 0.05757612 0.096687526 prediction 0.411502403695722 Functional Gain - GSN ENSG00000148180 CDS Human protein_coding chr9:124064421 chr9:124064424 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_126831 0 0 1 0 1 GSN chr9:124064445 5'GT 124064445 Upstream 22bp
chr17 73484865 73484865 1 + C T ACC 73484864 + 73484844 73484884 41 ACGAGCACATCGTCCTGGAGCCGGGAGACCTCTTCCCCCCC ACGAGCACATCGTCCTGGAGCTGGGAGACCTCTTCCCCCCC < 41bp 0.603807302997072 0.809551282769787 0.9386033 0.5903406 prediction 0.41148795954543 Functional Gain - TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73484864 chr17:73484865 nonsynonymous SNV 0.994 2 22 hm5C_associated_SNPs_126833 0 0 1 0 1 TMEM94 chr17:73484840 3'AG 73484840 Downstream 26bp
chr1 90152120 90152120 1 + T A SKCM 90152116 + 90152096 90152136 41 CCATGGTGGGATGTGTTTACCGATTACCTCTCAGTAGCCAT CCATGGTGGGATGTGTTTACCGATAACCTCTCAGTAGCCAT < 41bp 0.391424299941551 0.705742474705958 0.08991963 0.12783667 prediction 0.411484949411915 Functional Gain - LRRC8C ENSG00000171488;ENSG00000271949 CDS Human other chr1:90152116 chr1:90152120 nonsynonymous SNV 0.972 4 25 hm5C_associated_SNPs_126834 0 0 1 0 2 LRRC8C chr1:90152029 3'AG 90152029 Downstream 92bp
chr1 90152120 90152120 1 + T A SKCM 90152116 + 90152096 90152136 41 CCATGGTGGGATGTGTTTACCGATTACCTCTCAGTAGCCAT CCATGGTGGGATGTGTTTACCGATAACCTCTCAGTAGCCAT < 41bp 0.391424299941551 0.705742474705958 0.08991963 0.12783667 prediction 0.411484949411915 Functional Gain - LRRC8C ENSG00000171488;ENSG00000271949 CDS Human other chr1:90152116 chr1:90152120 nonsynonymous SNV 0.972 4 25 hm5C_associated_SNPs_126834 0 0 1 0 2 LRRC8C chr1:90152170 5'GT 90152170 Upstream 51bp
chr11 61257980 61257980 1 + A G LUAD 61257977 + 61257957 61257997 41 TCTTGCCTCCCTGCAGAACCCTGACCTCAGCTGACCCCTTC TCTTGCCTCCCTGCAGAACCCTGGCCTCAGCTGACCCCTTC < 41bp 0.592361140164683 0.798102914243729 0.06342569 0.21859604 prediction 0.411483548158093 Functional Gain - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61257977 chr11:61257980 nonsynonymous SNV 0.462 0 24 hm5C_associated_SNPs_126835 0 0 0 0 2 PPP1R32 chr11:61257973 3'AG 61257973 Downstream 8bp
chr11 61257980 61257980 1 + A G LUAD 61257977 + 61257957 61257997 41 TCTTGCCTCCCTGCAGAACCCTGACCTCAGCTGACCCCTTC TCTTGCCTCCCTGCAGAACCCTGGCCTCAGCTGACCCCTTC < 41bp 0.592361140164683 0.798102914243729 0.06342569 0.21859604 prediction 0.411483548158093 Functional Gain - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61257977 chr11:61257980 nonsynonymous SNV 0.462 0 24 hm5C_associated_SNPs_126835 0 0 0 0 2 PPP1R32 chr11:61258056 5'GT 61258056 Upstream 77bp
chr20 56138146 56138146 1 + C T UCEC 56138145 + 56138125 56138165 41 CTCATCGCCCACCTGCCTGACCGCAGAGAGATCATCTCCTT CTCATCGCCCACCTGCCTGACTGCAGAGAGATCATCTCCTT < 41bp 0.643068442732583 0.848808202870476 0.054183215 0.111307204 prediction 0.411479520275786 Functional Gain - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56138145 chr20:56138146 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_126836 0 0 0 0 1 PCK1 chr20:56138084 3'AG 56138084 Downstream 63bp
chr19 40480515 40480515 1 + T C LIHC 40480512 + 40480492 40480532 41 GCGGGAGGCCGTGGAGCTCCCGCTCACGCATTTCGAGCTCT GCGGGAGGCCGTGGAGCTCCCGCCCACGCATTTCGAGCTCT < 41bp 0.55374066528416 0.759479869718725 0.5704779 0.6178977 prediction 0.41147840886913 Functional Gain - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40480512 chr19:40480515 nonsynonymous SNV 0.045 5 24 hm5C_associated_SNPs_126837 0 0 1 0 2 PSMC4 chr19:40480431 3'AG 40480431 Downstream 85bp
chr19 40480515 40480515 1 + T C LIHC 40480512 + 40480492 40480532 41 GCGGGAGGCCGTGGAGCTCCCGCTCACGCATTTCGAGCTCT GCGGGAGGCCGTGGAGCTCCCGCCCACGCATTTCGAGCTCT < 41bp 0.55374066528416 0.759479869718725 0.5704779 0.6178977 prediction 0.41147840886913 Functional Gain - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40480512 chr19:40480515 nonsynonymous SNV 0.045 5 24 hm5C_associated_SNPs_126837 0 0 1 0 2 PSMC4 chr19:40480540 5'GT 40480540 Upstream 26bp
chr3 64179908 64179908 1 + T C rs62251773 64179906 + 64179886 64179926 41 TCAGGGATCTGCTCAAGCAACGTGGGATCCCCACTTTTTCA TCAGGGATCTGCTCAAGCAACGCGGGATCCCCACTTTTTCA < 41bp 0.54271650106168 0.748449695846881 0.63520503 0.7041732 prediction 0.411466389570402 Functional Gain - PRICKLE2-AS3 ENSG00000226017 ncRNA_exonic Human antisense chr3:64179906 chr3:64179908 . . 0 23 hm5C_associated_SNPs_126840 0 0 0 0 2 PRICKLE2-AS3 chr3:64179866 3'AG 64179866 Downstream 43bp
chr3 64179908 64179908 1 + T C rs62251773 64179906 + 64179886 64179926 41 TCAGGGATCTGCTCAAGCAACGTGGGATCCCCACTTTTTCA TCAGGGATCTGCTCAAGCAACGCGGGATCCCCACTTTTTCA < 41bp 0.54271650106168 0.748449695846881 0.63520503 0.7041732 prediction 0.411466389570402 Functional Gain - PRICKLE2-AS3 ENSG00000226017 ncRNA_exonic Human antisense chr3:64179906 chr3:64179908 . . 0 23 hm5C_associated_SNPs_126840 0 0 0 0 2 PRICKLE2-AS3 chr3:64179988 5'GT 64179988 Upstream 81bp
chr12 57180967 57180967 1 + T C UCEC 57180964 + 57180944 57180984 41 AGCACAAACCTGAACCTGGTCACTGACTGCATGGAACATGC AGCACAAACCTGAACCTGGTCACCGACTGCATGGAACATGC < 41bp 0.479726311135643 0.705730925209057 0.026449978 0.04367277 prediction 0.411461850418115 Functional Gain - HSD17B6 ENSG00000025423 CDS Human protein_coding chr12:57180964 chr12:57180967 synonymous SNV . 0 24 hm5C_associated_SNPs_126841 0 0 1 0 1 HSD17B6 chr12:57180909 3'AG 57180909 Downstream 59bp
chr2 219297606 219297606 1 + C A LUAD 219297605 + 219297585 219297625 41 AATGGTGAACCAGTCCAGATCCGGGTCCCAATGGGCAAGGA AATGGTGAACCAGTCCAGATCAGGGTCCCAATGGGCAAGGA < 41bp 0.64449579209981 0.850221214494133 0.8626996 0.8895156 prediction 0.411450844788646 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219297605 chr2:219297606 synonymous SNV . 0 22 hm5C_associated_SNPs_126842 0 0 1 0 2 VIL1 chr2:219297516 3'AG 219297516 Downstream 91bp
chr2 219297606 219297606 1 + C A LUAD 219297605 + 219297585 219297625 41 AATGGTGAACCAGTCCAGATCCGGGTCCCAATGGGCAAGGA AATGGTGAACCAGTCCAGATCAGGGTCCCAATGGGCAAGGA < 41bp 0.64449579209981 0.850221214494133 0.8626996 0.8895156 prediction 0.411450844788646 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219297605 chr2:219297606 synonymous SNV . 0 22 hm5C_associated_SNPs_126842 0 0 1 0 2 VIL1 chr2:219297674 5'GT 219297674 Upstream 69bp
chr19 3748039 3748039 1 + C A rs373989858 3748038 + 3748018 3748058 41 AGGCAGATGAGTCCCAGAGCCCGAGGGATCGTGGGAGAATC AGGCAGATGAGTCCCAGAGCCAGAGGGATCGTGGGAGAATC < 41bp 0.437805909921011 0.705722500905425 0.863701 0.8899249 prediction 0.411445001810851 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3748038 chr19:3748039 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_126843 0 0 0 0 1 TJP3 chr19:3748079 5'GT 3748079 Upstream 41bp
chr19 55175709 55175709 1 + T A LUAD 55175705 + 55175685 55175725 41 CCTCAGGAAAGAGCGTGACCCTGCTGTGTCAGTCACGGAGC CCTCAGGAAAGAGCGTGACCCTGCAGTGTCAGTCACGGAGC < 41bp 0.699314187936309 0.905030454821058 0.17384723 0.18999374 prediction 0.411432533769497 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55175705 chr19:55175709 nonsynonymous SNV 0.028 0 25 hm5C_associated_SNPs_126846 0 0 0 0 1 LILRB4 chr19:55175637 3'AG 55175637 Downstream 73bp
chr13 80107501 80107501 1 + T C UCEC 80107498 + 80107478 80107518 41 TTTTATCCCGTGCCACCTCCCTATAGCGTTGCTACCTCTCT TTTTATCCCGTGCCACCTCCCTACAGCGTTGCTACCTCTCT < 41bp 0.563370346475818 0.769083563926692 0.106989205 0.39535654 prediction 0.411426434901748 Functional Gain - NDFIP2 ENSG00000102471 CDS Human protein_coding chr13:80107498 chr13:80107501 synonymous SNV . 0 24 hm5C_associated_SNPs_126847 0 0 1 9 1 NDFIP2 chr13:80107458 3'AG 80107458 Downstream 44bp
chr19 41242908 41242908 1 + T C UCEC 41242905 + 41242885 41242925 41 CTACAGAAGGCAGATGGGACCTGTAACACCAACTTCAAGAA CTACAGAAGGCAGATGGGACCTGCAACACCAACTTCAAGAA < 41bp 0.571130880849486 0.776833405354108 0.16162392 0.16300091 prediction 0.411405049009244 Functional Gain - ITPKC ENSG00000086544 CDS Human protein_coding chr19:41242905 chr19:41242908 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_126852 0 0 0 0 2 ITPKC chr19:41242891 3'AG 41242891 Downstream 18bp
chr19 41242908 41242908 1 + T C UCEC 41242905 + 41242885 41242925 41 CTACAGAAGGCAGATGGGACCTGTAACACCAACTTCAAGAA CTACAGAAGGCAGATGGGACCTGCAACACCAACTTCAAGAA < 41bp 0.571130880849486 0.776833405354108 0.16162392 0.16300091 prediction 0.411405049009244 Functional Gain - ITPKC ENSG00000086544 CDS Human protein_coding chr19:41242905 chr19:41242908 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_126852 0 0 0 0 2 ITPKC chr19:41242992 5'GT 41242992 Upstream 85bp
chrX 69647169 69647169 1 + T C rs5980939 69647166 + 69647146 69647186 41 ACCCCTTGTGCCCTCAGCTCCGATGGGGTCCCCTTCCTCAT ACCCCTTGTGCCCTCAGCTCCGACGGGGTCCCCTTCCTCAT < 41bp 0.529422043037424 0.735122752610928 0.43844885 0.35061324 prediction 0.411401419147009 Functional Gain - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69647166 chrX:69647169 synonymous SNV . 0 24 hm5C_associated_SNPs_126855 0 0 0 0 1 GDPD2 chrX:69647163 3'AG 69647163 Downstream 7bp
chr19 7565735 7565735 1 + C G rs115016050 7565731 + 7565711 7565751 41 GGCCACAGGCGCCCTCCTGCCGTGCTCGCGCCCGTGCCCGA GGCCACAGGCGCCCTCCTGCCGTGGTCGCGCCCGTGCCCGA < 41bp 0.675305259007448 0.881003759009876 0.118159086 0.8715434 prediction 0.411397000004855 Functional Gain - TEX45 ENSG00000198723 CDS Human protein_coding chr19:7565731 chr19:7565735 nonsynonymous SNV 0.139 0 25 hm5C_associated_SNPs_126857 0 0 0 0 1 TEX45 chr19:7565692 3'AG 7565692 Downstream 44bp
chr19 41597773 41597773 1 + C A LUAD 41597772 + 41597752 41597792 41 GCACGCTGGATCCCAATTCCCCACGGGACTTCATCGACTCC GCACGCTGGATCCCAATTCCCAACGGGACTTCATCGACTCC < 41bp 0.431122640703384 0.705692177341156 0.1839549 0.3875531 prediction 0.411384354682312 Functional Gain - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41597772 chr19:41597773 nonsynonymous SNV 0.595 3 22 hm5C_associated_SNPs_126860 0 0 0 0 1 CYP2A13 chr19:41597813 5'GT 41597813 Upstream 41bp
chr11 112064354 112064354 1 + C G OV 112064353 + 112064333 112064373 41 GAATTTGGCACACTGGCTCTCCCGGATCCATGCAAGAATGT GAATTTGGCACACTGGCTCTCGCGGATCCATGCAAGAATGT < 41bp 0.3786363757906 0.705691641241905 0.45161593 0.8771818 prediction 0.41138328248381 Functional Gain - BCO2 ENSG00000197580;ENSG00000272790 CDS Human other chr11:112064353 chr11:112064354 nonsynonymous SNV 0.765 5 22 hm5C_associated_SNPs_126861 0 0 0 0 1 BCO2 chr11:112064420 5'GT 112064420 Upstream 67bp
chr5 43613176 43613176 1 + T C BLCA 43613173 + 43613153 43613193 41 TCCAAGTTCTCAGATGATCACTATAGAGTGGCAGGTGCCCA TCCAAGTTCTCAGATGATCACTACAGAGTGGCAGGTGCCCA < 41bp 0.574836220815495 0.780527707332927 0.19994903 0.80799556 prediction 0.411382973034864 Functional Gain - NNT ENSG00000112992 CDS Human protein_coding chr5:43613173 chr5:43613176 synonymous SNV . 0 24 hm5C_associated_SNPs_126862 0 0 0 0 1 NNT chr5:43613239 5'GT 43613239 Upstream 64bp
chr21 42762541 42762541 1 + T A LUAD 42762539 + 42762519 42762559 41 CAGAGGCAGCAGACGATCAACTTGGTGGTGGTTCCCTGTAA CAGAGGCAGCAGACGATCAACTAGGTGGTGGTTCCCTGTAA < 41bp 0.508885018960578 0.714573571167859 0.50966704 0.75402385 prediction 0.411377104414562 Functional Gain - MX2 ENSG00000183486 CDS Human protein_coding chr21:42762539 chr21:42762541 stopgain 0.995 0 23 hm5C_associated_SNPs_126863 0 0 1 0 2 MX2 chr21:42762492 3'AG 42762492 Downstream 50bp
chr21 42762541 42762541 1 + T A LUAD 42762539 + 42762519 42762559 41 CAGAGGCAGCAGACGATCAACTTGGTGGTGGTTCCCTGTAA CAGAGGCAGCAGACGATCAACTAGGTGGTGGTTCCCTGTAA < 41bp 0.508885018960578 0.714573571167859 0.50966704 0.75402385 prediction 0.411377104414562 Functional Gain - MX2 ENSG00000183486 CDS Human protein_coding chr21:42762539 chr21:42762541 stopgain 0.995 0 23 hm5C_associated_SNPs_126863 0 0 1 0 2 MX2 chr21:42762630 5'GT 42762630 Upstream 90bp
chr3 39178864 39178864 1 + A G LUSC 39178861 + 39178841 39178881 41 CTGCGCTGGGCAGCTTCATCCAGATAGCGCAGGCTGAGGTG CTGCGCTGGGCAGCTTCATCCAGGTAGCGCAGGCTGAGGTG < 41bp 0.615939070636423 0.821619775415167 0.3485849 0.89747334 prediction 0.411361409557488 Functional Gain - TTC21A ENSG00000168026 CDS Human protein_coding chr3:39178861 chr3:39178864 nonsynonymous SNV 0.131 0 24 hm5C_associated_SNPs_126866 0 0 0 0 1 TTC21A chr3:39178878 5'GT 39178878 Upstream 15bp
chr19 36606534 36606534 1 + C T LUAD 36606533 + 36606513 36606553 41 CTCCCTCAACACCTTCCGCTCCGAGAAGCGATACAGCCGCA CTCCCTCAACACCTTCCGCTCTGAGAAGCGATACAGCCGCA < 41bp 0.480986449559488 0.705678418111021 0.33034956 0.13065884 prediction 0.411356836222042 Functional Gain - TBCB ENSG00000105254 CDS Human protein_coding chr19:36606533 chr19:36606534 synonymous SNV . 0 22 hm5C_associated_SNPs_126867 0 0 1 0 1 TBCB chr19:36606576 5'GT 36606576 Upstream 43bp
chr14 61346478 61346478 1 + T C STAD 61346475 + 61346455 61346495 41 TATTCACAAGCTTGAAGAAGCTCTGTATGAATACCAGCCAC TATTCACAAGCTTGAAGAAGCTCCGTATGAATACCAGCCAC < 41bp 0.573461946277871 0.779138760403672 0.083907604 0.18288252 prediction 0.411353628251602 Functional Gain - MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61346475 chr14:61346478 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_126868 0 0 1 0 1 MNAT1 chr14:61346553 5'GT 61346553 Upstream 76bp
chrX 154444770 154444770 1 + T C ESCA 154444768 + 154444748 154444788 41 CGCATCCCCAAGATGGCGGCCGTTAAGGACAGTTGTGGCAA CGCATCCCCAAGATGGCGGCCGCTAAGGACAGTTGTGGCAA < 41bp 0.615432814305422 0.821107836264419 0.33807468 0.29478902 prediction 0.411350043917993 Functional Gain - VBP1 ENSG00000155959 CDS Human protein_coding chrX:154444768 chrX:154444770 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_126869 0 0 1 0 1 VBP1 chrX:154444852 5'GT 154444852 Upstream 83bp
chr3 9788941 9788941 1 + C T LUSC 9788940 + 9788920 9788960 41 GAGGGCCGCAAGTCCAACATCCGCAAGTCAGTACAGATCGC GAGGGCCGCAAGTCCAACATCTGCAAGTCAGTACAGATCGC < 41bp 0.440424742532848 0.705674268660192 0.13913438 0.29625827 prediction 0.411348537320385 Functional Gain - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9788940 chr3:9788941 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_126872 0 0 1 0 1 BRPF1 chr3:9788850 3'AG 9788850 Downstream 92bp
chr7 129986338 129986338 1 + C T rs6973851 129986337 + 129986317 129986357 41 AGGAAGAAGCATGCAGGGCACCCCTGGAGGCGGGACGCGCC AGGAAGAAGCATGCAGGGCACTCCTGGAGGCGGGACGCGCC < 41bp 0.61021715078417 0.815883349200905 0.2538135 0.39090383 prediction 0.411332396833469 Functional Gain - CPA5 ENSG00000158525 CDS Human protein_coding chr7:129986337 chr7:129986338 synonymous SNV . 0 22 hm5C_associated_SNPs_126874 0 0 0 0 1 CPA5 chr7:129986248 3'AG 129986248 Downstream 91bp
chr8 124429131 124429131 1 + C G MESO 124429127 + 124429107 124429147 41 CGCTGCTGTCCACTACCAGCCGGCCAGCCCCCCGCGGGACG CGCTGCTGTCCACTACCAGCCGGCGAGCCCCCCGCGGGACG < 41bp 0.660590495748606 0.86625515848226 0.30782682 0.55858827 prediction 0.411329325467308 Functional Gain - WDYHV1 ENSG00000156795 CDS Human protein_coding chr8:124429127 chr8:124429131 synonymous SNV . 0 25 hm5C_associated_SNPs_126876 0 0 1 0 1 WDYHV1 chr8:124429172 5'GT 124429172 Upstream 42bp
chr11 65554911 65554911 1 + C A LUAD 65554910 + 65554890 65554930 41 AAGAGGAACTGGAGCGAGCTCCCCGACGAGGAGCGCGGCGA AAGAGGAACTGGAGCGAGCTCACCGACGAGGAGCGCGGCGA < 41bp 0.622040189408349 0.827700985254617 0.6506822 0.5843357 prediction 0.411321591692537 Functional Gain - OVOL1 ENSG00000172818 CDS Human protein_coding chr11:65554910 chr11:65554911 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_126878 0 0 0 0 1 OVOL1 chr11:65554944 5'GT 65554944 Upstream 34bp
chr4 4388874 4388874 1 + C G rs10015223 4388870 + 4388850 4388890 41 AGGAGACGCGGAGCTCGGAGCGCTCAGCTGACCTGCCGGAG AGGAGACGCGGAGCTCGGAGCGCTGAGCTGACCTGCCGGAG < 41bp 0.50389927165025 0.709551015897773 0.8250705 0.85585105 prediction 0.411303488495047 Functional Gain - NSG1 ENSG00000168824 UTR5 Human protein_coding chr4:4388870 chr4:4388874 . . 0 25 hm5C_associated_SNPs_126883 0 1 0 0 2 NSG1 chr4:4388846 3'AG 4388846 Downstream 29bp
chr4 4388874 4388874 1 + C G rs10015223 4388870 + 4388850 4388890 41 AGGAGACGCGGAGCTCGGAGCGCTCAGCTGACCTGCCGGAG AGGAGACGCGGAGCTCGGAGCGCTGAGCTGACCTGCCGGAG < 41bp 0.50389927165025 0.709551015897773 0.8250705 0.85585105 prediction 0.411303488495047 Functional Gain - NSG1 ENSG00000168824 UTR5 Human protein_coding chr4:4388870 chr4:4388874 . . 0 25 hm5C_associated_SNPs_126883 0 1 0 0 2 NSG1 chr4:4388900 5'GT 4388900 Upstream 27bp
chr16 5046417 5046417 1 + C T rs141961295 5046416 + 5046396 5046436 41 ACGCCCATGCAGGAGAGCTGCCTGATCCAGCTTCGGCACTG ACGCCCATGCAGGAGAGCTGCTTGATCCAGCTTCGGCACTG < 41bp 0.442700796223024 0.705650147356578 0.051960707 0.08131066 prediction 0.411300294713156 Functional Gain - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5046416 chr16:5046417 synonymous SNV . 0 22 hm5C_associated_SNPs_126884 0 0 0 0 2 SEC14L5 chr16:5046349 3'AG 5046349 Downstream 69bp
chr16 5046417 5046417 1 + C T rs141961295 5046416 + 5046396 5046436 41 ACGCCCATGCAGGAGAGCTGCCTGATCCAGCTTCGGCACTG ACGCCCATGCAGGAGAGCTGCTTGATCCAGCTTCGGCACTG < 41bp 0.442700796223024 0.705650147356578 0.051960707 0.08131066 prediction 0.411300294713156 Functional Gain - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5046416 chr16:5046417 synonymous SNV . 0 22 hm5C_associated_SNPs_126884 0 0 0 0 2 SEC14L5 chr16:5046461 5'GT 5046461 Upstream 45bp
chr17 41365901 41365901 1 + C A UCEC 41365900 + 41365880 41365920 41 ATGGGGACCAGAGGCTGAAGCCCAAGCACACGTAAGCCCCC ATGGGGACCAGAGGCTGAAGCACAAGCACACGTAAGCCCCC < 41bp 0.644162426957126 0.849806079478925 0.33148336 0.445668 prediction 0.411287305043599 Functional Gain - TMEM106A ENSG00000184988 CDS Human protein_coding chr17:41365900 chr17:41365901 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_126887 0 0 1 0 2 TMEM106A chr17:41365847 3'AG 41365847 Downstream 55bp
chr17 41365901 41365901 1 + C A UCEC 41365900 + 41365880 41365920 41 ATGGGGACCAGAGGCTGAAGCCCAAGCACACGTAAGCCCCC ATGGGGACCAGAGGCTGAAGCACAAGCACACGTAAGCCCCC < 41bp 0.644162426957126 0.849806079478925 0.33148336 0.445668 prediction 0.411287305043599 Functional Gain - TMEM106A ENSG00000184988 CDS Human protein_coding chr17:41365900 chr17:41365901 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_126887 0 0 1 0 2 TMEM106A chr17:41365910 5'GT 41365910 Upstream 10bp
chr1 54554360 54554360 1 + A G STAD 54554357 + 54554337 54554377 41 CACTGAGTGGAAAACTTTCACTGAAAAACATTCAAATAGAC CACTGAGTGGAAAACTTTCACTGGAAAACATTCAAATAGAC < 41bp 0.559539083445502 0.765179943303375 0.043367088 0.11398253 prediction 0.411281719715747 Functional Gain - TCEANC2 ENSG00000116205 CDS Human protein_coding chr1:54554357 chr1:54554360 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_126888 0 0 1 0 1 TCEANC2 chr1:54554270 3'AG 54554270 Downstream 91bp
chr1 171300910 171300910 1 + A G UCEC 171300907 + 171300887 171300927 41 ACATTGCTGTGGAACTCAGTCGAACGGCAGCTCAGGTACAT ACATTGCTGTGGAACTCAGTCGAGCGGCAGCTCAGGTACAT < 41bp 0.461777297219081 0.705622513385344 0.5471175 0.85556483 prediction 0.411245026770688 Functional Gain - FMO4 ENSG00000076258 CDS Human protein_coding chr1:171300907 chr1:171300910 nonsynonymous SNV 0.276 0 24 hm5C_associated_SNPs_126896 0 0 0 0 1 FMO4 chr1:171300921 5'GT 171300921 Upstream 12bp
chr11 118243291 118243291 1 + C T STAD 118243290 + 118243270 118243310 41 AACCTCACTGTGTCCAATACCCGAACAGTTCTTCTCACCCC AACCTCACTGTGTCCAATACCTGAACAGTTCTTCTCACCCC < 41bp 0.627746887203051 0.833355986974452 0.24090841 0.18236053 prediction 0.411218199542802 Functional Gain - UBE4A ENSG00000110344 CDS Human protein_coding chr11:118243290 chr11:118243291 stopgain 0.869 1 22 hm5C_associated_SNPs_126902 0 0 1 0 2 UBE4A chr11:118243222 3'AG 118243222 Downstream 70bp
chr11 118243291 118243291 1 + C T STAD 118243290 + 118243270 118243310 41 AACCTCACTGTGTCCAATACCCGAACAGTTCTTCTCACCCC AACCTCACTGTGTCCAATACCTGAACAGTTCTTCTCACCCC < 41bp 0.627746887203051 0.833355986974452 0.24090841 0.18236053 prediction 0.411218199542802 Functional Gain - UBE4A ENSG00000110344 CDS Human protein_coding chr11:118243290 chr11:118243291 stopgain 0.869 1 22 hm5C_associated_SNPs_126902 0 0 1 0 2 UBE4A chr11:118243381 5'GT 118243381 Upstream 91bp
chr15 28900486 28900486 1 + T C rs528722332 28900484 + 28900464 28900504 41 AAGACCGAAAGGGCGAGGGACATGAAATGCCTCGTGGAGAA AAGACCGAAAGGGCGAGGGACACGAAATGCCTCGTGGAGAA < 41bp 0.659431645328421 0.865037992642111 0.3404845 0.25120807 prediction 0.41121269462738 Functional Gain - HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28900484 chr15:28900486 . . 0 23 hm5C_associated_SNPs_126903 0 0 1 0 1 HERC2P9 chr15:28900566 5'GT 28900566 Upstream 81bp
chr11 113140939 113140939 1 - A C SKCM 113140943 - 113140923 113140963 41 TGAGGATGCCCACGATGGCCCCGGTGCTCAGGCCTGAGGTG TGAGGATGCCCACGATGGCCCCGGGGCTCAGGCCTGAGGTG < 41bp 0.499177651776981 0.705605318819867 0.6866045 0.8379203 prediction 0.411210637639734 Functional Gain - NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113140943 chr11:113140939 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_126904 0 0 0 0 1 NCAM1 chr11:113140926 5'GT 113140926 Upstream 14bp
chr9 71862958 71862958 1 + C T UCEC 71862957 + 71862937 71862977 41 ATGGATGATGACCCCGAAGACCGCATGTCCTACTTAACCGC ATGGATGATGACCCCGAAGACTGCATGTCCTACTTAACCGC < 41bp 0.438155523857433 0.705605302155755 0.12863326 0.21224052 prediction 0.41121060431151 Functional Gain - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71862957 chr9:71862958 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_126905 0 0 1 0 1 TJP2 chr9:71862928 3'AG 71862928 Downstream 31bp
chr3 40223808 40223808 1 + C A rs144807590 40223804 + 40223784 40223824 41 AGCCAAGGGACCAAGGCCAACACCCGAGAGCAGAGTCTGCT AGCCAAGGGACCAAGGCCAACACCAGAGAGCAGAGTCTGCT < 41bp 0.285192239246774 0.705599942049711 0.086184025 0.19063514 prediction 0.411199884099421 Functional Gain - MYRIP ENSG00000170011 CDS Human protein_coding chr3:40223804 chr3:40223808 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_126907 0 0 0 0 2 MYRIP chr3:40223711 3'AG 40223711 Downstream 98bp
chr3 40223808 40223808 1 + C A rs144807590 40223804 + 40223784 40223824 41 AGCCAAGGGACCAAGGCCAACACCCGAGAGCAGAGTCTGCT AGCCAAGGGACCAAGGCCAACACCAGAGAGCAGAGTCTGCT < 41bp 0.285192239246774 0.705599942049711 0.086184025 0.19063514 prediction 0.411199884099421 Functional Gain - MYRIP ENSG00000170011 CDS Human protein_coding chr3:40223804 chr3:40223808 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_126907 0 0 0 0 2 MYRIP chr3:40223864 5'GT 40223864 Upstream 57bp
chr16 69964146 69964146 1 + C T BLCA 69964145 + 69964125 69964165 41 CCACCTTTAAGGATCCTCGCCCGGGGTTTGAGTCGGGGTAA CCACCTTTAAGGATCCTCGCCTGGGGTTTGAGTCGGGGTAA < 41bp 0.454492411258713 0.705597278578958 0.91344523 0.8517221 prediction 0.411194557157915 Functional Gain - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69964145 chr16:69964146 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_126908 0 0 0 0 1 WWP2 chr16:69964161 5'GT 69964161 Upstream 16bp
chr15 78566575 78566575 1 + C T COAD 78566574 + 78566554 78566594 41 AGGGATCGGTGGAGAAGTGCCCGCTGTGCAAGGGGCGGGGG AGGGATCGGTGGAGAAGTGCCTGCTGTGCAAGGGGCGGGGG < 41bp 0.62997566799651 0.8355704769603 0.14431092 0.28800988 prediction 0.411189617927579 Functional Gain - DNAJA4 ENSG00000140403 CDS Human protein_coding chr15:78566574 chr15:78566575 nonsynonymous SNV 0.946 1 22 hm5C_associated_SNPs_126909 0 0 0 0 1 DNAJA4 chr15:78566539 3'AG 78566539 Downstream 37bp
chr22 26886156 26886156 1 + T C LUAD 26886154 + 26886134 26886174 41 TTGGGAACAGTTTCAAAGGACTTGAGGAGAGGTAAGTCTGA TTGGGAACAGTTTCAAAGGACTCGAGGAGAGGTAAGTCTGA < 41bp 0.477542664424859 0.70559028006856 0.043960452 0.09696314 prediction 0.411180560137121 Functional Gain - SRRD ENSG00000100104 CDS Human protein_coding chr22:26886154 chr22:26886156 synonymous SNV . 0 23 hm5C_associated_SNPs_126912 0 0 1 0 1 SRRD chr22:26886164 5'GT 26886164 Upstream 9bp
chr6 44198152 44198152 1 + C T KIRC 44198151 + 44198131 44198171 41 CTGCCTGCCAGCTACACGGCCCCCATCATGAGTGGCCAGGG CTGCCTGCCAGCTACACGGCCTCCATCATGAGTGGCCAGGG < 41bp 0.423601735954213 0.705584680204157 0.012355775 0.9157652 prediction 0.411169360408315 Functional Gain - SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44198151 chr6:44198152 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_126914 0 0 1 1 1 SLC29A1 chr6:44198084 3'AG 44198084 Downstream 69bp
chr5 149562435 149562435 1 + A G UCEC 149562432 + 149562412 149562452 41 GCCGTTACATCACAATCCGGCGGAAATCAGAGCTGGCTGCC GCCGTTACATCACAATCCGGCGGGAATCAGAGCTGGCTGCC < 41bp 0.610361917908679 0.815945258076026 0.6212483 0.8597128 prediction 0.411166680334695 Functional Gain - CDX1 ENSG00000113722 CDS Human protein_coding chr5:149562432 chr5:149562435 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_126915 0 0 0 0 1 CDX1 chr5:149562476 5'GT 149562476 Upstream 42bp
chr4 56734528 56734528 1 + A G LUAD 56734525 + 56734505 56734545 41 CTGTTCCAAGTGGAGAAAATCAGAGTGTGACAGGAGGTGAT CTGTTCCAAGTGGAGAAAATCAGGGTGTGACAGGAGGTGAT < 41bp 0.581787714429909 0.787370753487389 0.89375806 0.92073 prediction 0.411166078114959 Functional Gain - EXOC1 ENSG00000090989 CDS Human protein_coding chr4:56734525 chr4:56734528 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_126916 0 0 1 0 1 EXOC1 chr4:56734502 3'AG 56734502 Downstream 27bp
chr2 26409196 26409196 1 + C A COAD 26409192 + 26409172 26409212 41 CCGGTACATTCCCCCAGCTCCAGCCTCTCCTACTACTCCTC CCGGTACATTCCCCCAGCTCCAGCATCTCCTACTACTCCTC < 41bp 0.282872042762717 0.7055830009214 0.21978045 0.22814846 prediction 0.411166001842801 Functional Gain - GAREM2 ENSG00000157833 CDS Human protein_coding chr2:26409192 chr2:26409196 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_126917 0 0 0 0 1 GAREM2 chr2:26409227 5'GT 26409227 Upstream 32bp
chr11 74329801 74329801 1 + C T SKCM 74329800 + 74329780 74329820 41 CTCCAAAGCTGCTGCTAAAACCCAAGAAACCAACAAGGAAA CTCCAAAGCTGCTGCTAAAACTCAAGAAACCAACAAGGAAA < 41bp 0.649935742474045 0.855515520987124 0.36823297 0.20878813 prediction 0.41115955702616 Functional Gain - POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329800 chr11:74329801 synonymous SNV . 0 22 hm5C_associated_SNPs_126918 0 0 0 0 1 POLD3 chr11:74329849 5'GT 74329849 Upstream 49bp
chr11 118849710 118849710 1 + C A LUAD 118849706 + 118849686 118849726 41 CCTCTGGATGTGGGTAAATCCCAACATTGTGTATCCCCCTG CCTCTGGATGTGGGTAAATCCCAAAATTGTGTATCCCCCTG < 41bp 0.290618806319611 0.705576973874683 0.11139202 0.22443074 prediction 0.411153947749367 Functional Gain - FOXR1 ENSG00000176302 CDS Human protein_coding chr11:118849706 chr11:118849710 nonsynonymous SNV 0.896 3 25 hm5C_associated_SNPs_126921 0 0 0 1 1 FOXR1 chr11:118849667 3'AG 118849667 Downstream 44bp
chr14 31169403 31169403 1 + C T UCEC 31169402 + 31169382 31169422 41 TCCCCTATGCAGCAGGAACTCCAGAAGATAAAATGAGGTTG TCCCCTATGCAGCAGGAACTCTAGAAGATAAAATGAGGTTG < 41bp 0.61813360017226 0.82370982833941 0.39220354 0.3261237 prediction 0.411152456334299 Functional Gain - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31169402 chr14:31169403 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_126922 0 0 1 0 2 SCFD1 chr14:31169394 3'AG 31169394 Downstream 10bp
chr14 31169403 31169403 1 + C T UCEC 31169402 + 31169382 31169422 41 TCCCCTATGCAGCAGGAACTCCAGAAGATAAAATGAGGTTG TCCCCTATGCAGCAGGAACTCTAGAAGATAAAATGAGGTTG < 41bp 0.61813360017226 0.82370982833941 0.39220354 0.3261237 prediction 0.411152456334299 Functional Gain - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31169402 chr14:31169403 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_126922 0 0 1 0 2 SCFD1 chr14:31169464 5'GT 31169464 Upstream 62bp
chr1 203465295 203465295 1 + C A LUSC 203465291 + 203465271 203465311 41 GCGGAATGATGTCCTGAACCCAGACAACTATGGTGAAGTCA GCGGAATGATGTCCTGAACCCAGAAAACTATGGTGAAGTCA < 41bp 0.293650712478515 0.705575771146856 0.31149924 0.3573895 prediction 0.411151542293712 Functional Gain - OPTC ENSG00000188770 CDS Human protein_coding chr1:203465291 chr1:203465295 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_126924 0 0 0 0 1 OPTC chr1:203465364 5'GT 203465364 Upstream 70bp
chr20 30414739 30414739 1 + A G BLCA 30414736 + 30414716 30414756 41 TGAGGGTTTTGCACCTGGACCTCAAGGTACCAGACTGGGGC TGAGGGTTTTGCACCTGGACCTCGAGGTACCAGACTGGGGC < 41bp 0.621724591481766 0.827292908242595 0.14946651 0.36618224 prediction 0.411136633521658 Functional Gain - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30414736 chr20:30414739 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_126928 0 0 0 0 1 MYLK2 chr20:30414741 5'GT 30414741 Upstream 3bp
chrX 118717179 118717179 1 + T A LUAD 118717177 + 118717157 118717197 41 ACAAACGGGAATATGAAAAGCGTGTTTCTGCAATAGTAGAA ACAAACGGGAATATGAAAAGCGAGTTTCTGCAATAGTAGAA < 41bp 0.495907418544326 0.705567629352452 0.3671981 0.35406435 prediction 0.411135258704905 Functional Gain - UBE2A ENSG00000077721 CDS Human protein_coding chrX:118717177 chrX:118717179 synonymous SNV . 0 23 hm5C_associated_SNPs_126929 0 0 1 6 1 UBE2A chrX:118717090 3'AG 118717090 Downstream 90bp
chr20 19261697 19261697 1 + C T OV 19261696 + 19261676 19261716 41 CACTCTGACTTCCGAAGATGCCGGACTCCGGAACAGCAAGA CACTCTGACTTCCGAAGATGCTGGACTCCGGAACAGCAAGA < 41bp 0.481430100733839 0.705565251826124 0.2319952 0.4020223 prediction 0.411130503652249 Functional Gain - SLC24A3 ENSG00000185052 CDS Human protein_coding chr20:19261696 chr20:19261697 synonymous SNV . 0 22 hm5C_associated_SNPs_126932 0 0 0 0 2 SLC24A3 chr20:19261603 3'AG 19261603 Downstream 95bp
chr20 19261697 19261697 1 + C T OV 19261696 + 19261676 19261716 41 CACTCTGACTTCCGAAGATGCCGGACTCCGGAACAGCAAGA CACTCTGACTTCCGAAGATGCTGGACTCCGGAACAGCAAGA < 41bp 0.481430100733839 0.705565251826124 0.2319952 0.4020223 prediction 0.411130503652249 Functional Gain - SLC24A3 ENSG00000185052 CDS Human protein_coding chr20:19261696 chr20:19261697 synonymous SNV . 0 22 hm5C_associated_SNPs_126932 0 0 0 0 2 SLC24A3 chr20:19261731 5'GT 19261731 Upstream 35bp
chr17 30685658 30685658 1 + A G COAD 30685655 + 30685635 30685675 41 ACGACTTCTTGAACAGAAAACACAAGGTAAATATTGGGATA ACGACTTCTTGAACAGAAAACACGAGGTAAATATTGGGATA < 41bp 0.522184703936573 0.727746326625169 0.107045114 0.13344908 prediction 0.411123245377191 Functional Gain - ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30685655 chr17:30685658 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_126936 0 0 1 0 1 ZNF207 chr17:30685660 5'GT 30685660 Upstream 3bp
chr19 19307779 19307779 1 + C G OV 19307776 + 19307756 19307796 41 GTTGTCTGTTTCCCAGCAGGCAGCTCCCTGAAGCACTCCAC GTTGTCTGTTTCCCAGCAGGCAGGTCCCTGAAGCACTCCAC < 41bp 0.506985430010001 0.712544830073621 0.10058892 0.28637034 prediction 0.411118800127241 Functional Gain - RFXANK ENSG00000064490 CDS Human protein_coding chr19:19307776 chr19:19307779 nonsynonymous SNV 0.743 0 24 hm5C_associated_SNPs_126937 0 0 1 0 3 RFXANK chr19:19307772 3'AG 19307772 Downstream 8bp
chr19 19307779 19307779 1 + C G OV 19307776 + 19307756 19307796 41 GTTGTCTGTTTCCCAGCAGGCAGCTCCCTGAAGCACTCCAC GTTGTCTGTTTCCCAGCAGGCAGGTCCCTGAAGCACTCCAC < 41bp 0.506985430010001 0.712544830073621 0.10058892 0.28637034 prediction 0.411118800127241 Functional Gain - RFXANK ENSG00000064490 CDS Human protein_coding chr19:19307776 chr19:19307779 nonsynonymous SNV 0.743 0 24 hm5C_associated_SNPs_126937 0 0 1 0 3 RFXANK chr19:19307775 3'AG 19307775 Downstream 5bp
chr19 19307779 19307779 1 + C G OV 19307776 + 19307756 19307796 41 GTTGTCTGTTTCCCAGCAGGCAGCTCCCTGAAGCACTCCAC GTTGTCTGTTTCCCAGCAGGCAGGTCCCTGAAGCACTCCAC < 41bp 0.506985430010001 0.712544830073621 0.10058892 0.28637034 prediction 0.411118800127241 Functional Gain - RFXANK ENSG00000064490 CDS Human protein_coding chr19:19307776 chr19:19307779 nonsynonymous SNV 0.743 0 24 hm5C_associated_SNPs_126937 0 0 1 0 3 RFXANK chr19:19307855 5'GT 19307855 Upstream 77bp
chr21 44589369 44589369 1 + C T LUSC 44589368 + 44589348 44589388 41 TACTACCGCCAGTCCCTCTTCCGCACCGTGCTGGACTCCGG TACTACCGCCAGTCCCTCTTCTGCACCGTGCTGGACTCCGG < 41bp 0.619344434533713 0.824903538219791 0.26892614 0.23357534 prediction 0.411118207372154 Functional Gain - CRYAA;LOC102724652 ENSG00000160202 CDS Human protein_coding chr21:44589368 chr21:44589369 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_126938 2 0 0 0 1 CRYAA;LOC102724652 chr21:44589398 5'GT 44589398 Upstream 30bp
chr19 51986304 51986304 1 + C T SKCM 51986303 + 51986283 51986323 41 ATGTGCTGCTGAGGAGCAATCCTGATGATTTCAACGGCATT ATGTGCTGCTGAGGAGCAATCTTGATGATTTCAACGGCATT < 41bp 0.467487316772152 0.705558642700517 0.26453233 0.2186031 prediction 0.411117285401033 Functional Gain - CEACAM18 ENSG00000213822 CDS Human protein_coding chr19:51986303 chr19:51986304 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_126939 0 0 0 0 1 CEACAM18 chr19:51986271 3'AG 51986271 Downstream 34bp
chr19 3730669 3730669 1 + T C UCEC 3730666 + 3730646 3730686 41 GCAGGACGTGCAGATGAAGCCTGTGAAGTCAGTGCTGGTGA GCAGGACGTGCAGATGAAGCCTGCGAAGTCAGTGCTGGTGA < 41bp 0.568048606918062 0.77360059840524 0.016952306 0.040596187 prediction 0.411103982974355 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3730666 chr19:3730669 nonsynonymous SNV 0.129 0 24 hm5C_associated_SNPs_126941 0 0 0 0 1 TJP3 chr19:3730704 5'GT 3730704 Upstream 36bp
chr7 135377115 135377115 1 - G A STAD 135377116 - 135377096 135377136 41 GATGACCGTACTGTGGTTTACCCGGGAGCCTGGCTTTGTCC GATGACCGTACTGTGGTTTACTCGGGAGCCTGGCTTTGTCC < 41bp 0.638582173048316 0.844133704303794 0.7533567 0.46063402 prediction 0.411103062510956 Functional Gain - SLC13A4 ENSG00000164707 CDS Human protein_coding chr7:135377116 chr7:135377115 synonymous SNV . 0 22 hm5C_associated_SNPs_126942 0 0 0 0 2 SLC13A4 chr7:135377071 5'GT 135377071 Upstream 45bp
chr7 135377115 135377115 1 - G A STAD 135377116 - 135377096 135377136 41 GATGACCGTACTGTGGTTTACCCGGGAGCCTGGCTTTGTCC GATGACCGTACTGTGGTTTACTCGGGAGCCTGGCTTTGTCC < 41bp 0.638582173048316 0.844133704303794 0.7533567 0.46063402 prediction 0.411103062510956 Functional Gain - SLC13A4 ENSG00000164707 CDS Human protein_coding chr7:135377116 chr7:135377115 synonymous SNV . 0 22 hm5C_associated_SNPs_126942 0 0 0 0 2 SLC13A4 chr7:135377172 3'AG 135377172 Downstream 58bp
chr8 54791911 54791911 1 + T A LUSC 54791907 + 54791887 54791927 41 CTTTCCAGCCTCGCAAGGTTCTTCTCTCACCTTCTCCGGCG CTTTCCAGCCTCGCAAGGTTCTTCACTCACCTTCTCCGGCG < 41bp 0.368546903493587 0.705551008224375 0.13650358 0.19355038 prediction 0.411102016448751 Functional Gain - RGS20 ENSG00000147509 CDS Human protein_coding chr8:54791907 chr8:54791911 nonsynonymous SNV 0.732 1 25 hm5C_associated_SNPs_126943 0 0 0 0 1 RGS20 chr8:54791818 3'AG 54791818 Downstream 94bp
chr16 19126060 19126060 1 + C T SKCM 19126059 + 19126039 19126079 41 GCCTTCTCCTCGAGACACTTCCGAGAGCCGGGCCTCAGCAT GCCTTCTCCTCGAGACACTTCTGAGAGCCGGGCCTCAGCAT < 41bp 0.538766748099606 0.744312176717646 0.57385194 0.27607337 prediction 0.411090857236082 Functional Gain - ITPRIPL2 ENSG00000205730;ENSG00000261427 CDS Human other chr16:19126059 chr16:19126060 stopgain 0.144 0 22 hm5C_associated_SNPs_126945 0 0 1 0 1 ITPRIPL2 chr16:19125963 3'AG 19125963 Downstream 98bp
chr5 139740437 139740437 1 + C A LUAD 139740436 + 139740416 139740456 41 AAGTTGGAGGTGGCTGCAGGCCGGTGGAGTGCCCCCCACGT AAGTTGGAGGTGGCTGCAGGCAGGTGGAGTGCCCCCCACGT < 41bp 0.647969740607171 0.853513074072425 0.8967229 0.93001723 prediction 0.411086666930507 Functional Gain - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139740436 chr5:139740437 synonymous SNV . 0 22 hm5C_associated_SNPs_126948 0 0 0 0 1 SLC4A9 chr5:139740397 3'AG 139740397 Downstream 41bp
chr11 6291911 6291911 1 + C T LAML 6291910 + 6291890 6291930 41 TTCTGCTCTTGTTCTTCATCCCGGGTGTGGTTATGGCCGTG TTCTGCTCTTGTTCTTCATCCTGGGTGTGGTTATGGCCGTG < 41bp 0.597698446875906 0.803228095232682 0.89308333 0.8962587 prediction 0.411059296713552 Functional Gain - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6291910 chr11:6291911 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_126951 0 0 0 0 1 CCKBR chr11:6291876 3'AG 6291876 Downstream 36bp
chr16 28909751 28909751 1 + T C CESC 28909748 + 28909728 28909768 41 GAGGAAATGGTCCTGGATGACTCTGCCAGGTTCCTGGAGTA GAGGAAATGGTCCTGGATGACTCCGCCAGGTTCCTGGAGTA < 41bp 0.479835576075035 0.705528567936292 0.03548321 0.11209661 prediction 0.411057135872585 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28909748 chr16:28909751 synonymous SNV . 0 24 hm5C_associated_SNPs_126952 0 0 0 0 1 ATP2A1 chr16:28909772 5'GT 28909772 Upstream 22bp
chr11 199380 199380 1 + C T CESC 199379 + 199359 199399 41 TACCTCTCAGACCCCAGGTCCCGCAGCCTACCGCCAAACTG TACCTCTCAGACCCCAGGTCCTGCAGCCTACCGCCAAACTG < 41bp 0.48202961623782 0.705523684246113 0.42684305 0.14915854 prediction 0.411047368492227 Functional Gain - ODF3 ENSG00000177947 CDS Human protein_coding chr11:199379 chr11:199380 synonymous SNV . 0 22 hm5C_associated_SNPs_126953 0 0 0 0 1 ODF3 chr11:199369 3'AG 199369 Downstream 12bp
chr4 140307369 140307369 1 + T C rs372173050 140307366 + 140307346 140307386 41 ACAACACTTGATGAATCTCTCACTAACAGAAACCTCCAGGT ACAACACTTGATGAATCTCTCACCAACAGAAACCTCCAGGT < 41bp 0.551516814808188 0.757040421564915 0.06552765 0.05150357 prediction 0.411047213513455 Functional Gain - NAA15 ENSG00000164134 CDS Human protein_coding chr4:140307366 chr4:140307369 synonymous SNV . 0 24 hm5C_associated_SNPs_126954 0 0 1 0 2 NAA15 chr4:140307287 3'AG 140307287 Downstream 83bp
chr4 140307369 140307369 1 + T C rs372173050 140307366 + 140307346 140307386 41 ACAACACTTGATGAATCTCTCACTAACAGAAACCTCCAGGT ACAACACTTGATGAATCTCTCACCAACAGAAACCTCCAGGT < 41bp 0.551516814808188 0.757040421564915 0.06552765 0.05150357 prediction 0.411047213513455 Functional Gain - NAA15 ENSG00000164134 CDS Human protein_coding chr4:140307366 chr4:140307369 synonymous SNV . 0 24 hm5C_associated_SNPs_126954 0 0 1 0 2 NAA15 chr4:140307384 5'GT 140307384 Upstream 16bp
chr1 175092614 175092614 1 + C A LUSC 175092610 + 175092590 175092630 41 CTGTCTCCTGGGACCCGGTTCAGGCCACCATTGACAAGTAC CTGTCTCCTGGGACCCGGTTCAGGACACCATTGACAAGTAC < 41bp 0.292193333328373 0.705522200445577 0.33357018 0.3829871 prediction 0.411044400891154 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175092610 chr1:175092614 nonsynonymous SNV 0.042 4 25 hm5C_associated_SNPs_126956 0 0 0 0 1 TNN chr1:175092536 3'AG 175092536 Downstream 79bp
chr16 67203201 67203201 1 + A G LIHC 67203198 + 67203178 67203218 41 GCAGATGCAGCCCTTGGTTCCAGAGCGGGGTGAGCCTGAGC GCAGATGCAGCCCTTGGTTCCAGGGCGGGGTGAGCCTGAGC < 41bp 0.617282061649205 0.82279847294062 0.37171388 0.800405 prediction 0.411032822582829 Functional Gain - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67203198 chr16:67203201 nonsynonymous SNV 0.971 4 24 hm5C_associated_SNPs_126958 0 0 1 0 2 HSF4 chr16:67203182 3'AG 67203182 Downstream 20bp
chr16 67203201 67203201 1 + A G LIHC 67203198 + 67203178 67203218 41 GCAGATGCAGCCCTTGGTTCCAGAGCGGGGTGAGCCTGAGC GCAGATGCAGCCCTTGGTTCCAGGGCGGGGTGAGCCTGAGC < 41bp 0.617282061649205 0.82279847294062 0.37171388 0.800405 prediction 0.411032822582829 Functional Gain - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67203198 chr16:67203201 nonsynonymous SNV 0.971 4 24 hm5C_associated_SNPs_126958 0 0 1 0 2 HSF4 chr16:67203251 5'GT 67203251 Upstream 51bp
chr1 7895934 7895934 1 + C T SKCM 7895933 + 7895913 7895953 41 AGAAACATTTCCTAATGTCGCCGAAGAGCCCATCTGGAGAA AGAAACATTTCCTAATGTCGCTGAAGAGCCCATCTGGAGAA < 41bp 0.448141493132799 0.705515433184298 0.16827524 0.18370277 prediction 0.411030866368595 Functional Gain - PER3 ENSG00000049246 CDS Human protein_coding chr1:7895933 chr1:7895934 synonymous SNV . 0 22 hm5C_associated_SNPs_126959 0 0 1 0 1 PER3 chr1:7896005 5'GT 7896005 Upstream 72bp
chr12 12232649 12232649 1 + T C HNSC 12232647 + 12232627 12232667 41 TGGTCCAGGTGTCTTTCTAACGTGGAGCAGTGCTTGGAGCA TGGTCCAGGTGTCTTTCTAACGCGGAGCAGTGCTTGGAGCA < 41bp 0.624513263284007 0.830026175707956 0.5532709 0.71444243 prediction 0.411025824847898 Functional Gain - BCL2L14 ENSG00000121380 CDS Human protein_coding chr12:12232647 chr12:12232649 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_126960 0 0 0 0 1 BCL2L14 chr12:12232672 5'GT 12232672 Upstream 24bp
chr2 25038617 25038617 1 + C T rs149340371 25038616 + 25038596 25038636 41 GGGAGGAAGTACCAGGCAGACCGGCTTCAGGTATCTCTCTG GGGAGGAAGTACCAGGCAGACTGGCTTCAGGTATCTCTCTG < 41bp 0.46331285209624 0.705508436723291 0.32334605 0.15894502 prediction 0.411016873446583 Functional Gain - CENPO ENSG00000138092 CDS Human protein_coding chr2:25038616 chr2:25038617 nonsynonymous SNV 0.942 3 22 hm5C_associated_SNPs_126963 0 0 1 0 1 CENPO chr2:25038625 5'GT 25038625 Upstream 9bp
chr12 11992231 11992231 1 + T A OV 11992227 + 11992207 11992247 41 AGAGGACTTTCGCTATCGATCTCCTCATTCAGGTGAGAGTC AGAGGACTTTCGCTATCGATCTCCACATTCAGGTGAGAGTC < 41bp 0.346993675152195 0.7054959820742 0.09149617 0.88465655 prediction 0.4109919641484 Functional Gain - ETV6 ENSG00000139083 CDS Human protein_coding chr12:11992227 chr12:11992231 synonymous SNV . 0 25 hm5C_associated_SNPs_126967 0 0 1 0 1 ETV6 chr12:11992238 5'GT 11992238 Upstream 8bp
chr1 114196509 114196509 1 + C A LUSC 114196508 + 114196488 114196528 41 TTTCAACACAGAATGGATCTCCCCGCCTGAACCGGGCAGAG TTTCAACACAGAATGGATCTCACCGCCTGAACCGGGCAGAG < 41bp 0.449952662158141 0.705490592494457 0.17118108 0.17989087 prediction 0.410981184988913 Functional Gain - MAGI3 ENSG00000081026 CDS Human protein_coding chr1:114196508 chr1:114196509 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_126968 0 0 0 0 1 MAGI3 chr1:114196452 3'AG 114196452 Downstream 58bp
chr2 71191593 71191593 1 + C A COAD 71191589 + 71191569 71191609 41 TCTACCCCCCCATCAACGTGCTCCCTTCCCTGTCGCGGCTG TCTACCCCCCCATCAACGTGCTCCATTCCCTGTCGCGGCTG < 41bp 0.259394739524851 0.705489816372264 0.045579106 0.25545567 prediction 0.410979632744527 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71191589 chr2:71191593 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_126969 0 0 0 0 2 ATP6V1B1 chr2:71191568 3'AG 71191568 Downstream 26bp
chr2 71191593 71191593 1 + C A COAD 71191589 + 71191569 71191609 41 TCTACCCCCCCATCAACGTGCTCCCTTCCCTGTCGCGGCTG TCTACCCCCCCATCAACGTGCTCCATTCCCTGTCGCGGCTG < 41bp 0.259394739524851 0.705489816372264 0.045579106 0.25545567 prediction 0.410979632744527 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71191589 chr2:71191593 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_126969 0 0 0 0 2 ATP6V1B1 chr2:71191672 5'GT 71191672 Upstream 80bp
chr8 35624453 35624453 1 + C T LUSC 35624452 + 35624432 35624472 41 TCCCGCGTGTGGTGCAGTAACCGGCAGCCCCTGCACTGTGC TCCCGCGTGTGGTGCAGTAACTGGCAGCCCCTGCACTGTGC < 41bp 0.459437606602282 0.705488220034623 0.8782805 0.41960672 prediction 0.410976440069246 Functional Gain - UNC5D ENSG00000156687 CDS Human protein_coding chr8:35624452 chr8:35624453 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_126971 0 0 0 0 1 UNC5D chr8:35624420 3'AG 35624420 Downstream 34bp
chr5 134002605 134002605 1 + C T SKCM 134002604 + 134002584 134002624 41 CCTCCAGCTGGAGGCCCACCCCCAGTGAGGGCCCTCACGCC CCTCCAGCTGGAGGCCCACCCTCAGTGAGGGCCCTCACGCC < 41bp 0.636511826510162 0.841987183836954 0.25497055 0.19734657 prediction 0.410950714653585 Functional Gain - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134002604 chr5:134002605 nonsynonymous SNV 0.098 0 22 hm5C_associated_SNPs_126975 0 0 1 0 2 SEC24A chr5:134002513 3'AG 134002513 Downstream 93bp
chr5 134002605 134002605 1 + C T SKCM 134002604 + 134002584 134002624 41 CCTCCAGCTGGAGGCCCACCCCCAGTGAGGGCCCTCACGCC CCTCCAGCTGGAGGCCCACCCTCAGTGAGGGCCCTCACGCC < 41bp 0.636511826510162 0.841987183836954 0.25497055 0.19734657 prediction 0.410950714653585 Functional Gain - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134002604 chr5:134002605 nonsynonymous SNV 0.098 0 22 hm5C_associated_SNPs_126975 0 0 1 0 2 SEC24A chr5:134002686 5'GT 134002686 Upstream 82bp
chr13 53227222 53227222 1 + C T SKCM 53227221 + 53227201 53227241 41 ATGCCCTAATCGACGAGGACCCCCAGGCGGCGTTAGAGGTG ATGCCCTAATCGACGAGGACCTCCAGGCGGCGTTAGAGGTG < 41bp 0.579640446046462 0.785115665046731 0.1632199 0.94761294 prediction 0.410950438000537 Functional Gain - SUGT1 ENSG00000165416 CDS Human protein_coding chr13:53227221 chr13:53227222 nonsynonymous SNV 0.987 3 22 hm5C_associated_SNPs_126976 0 0 1 0 2 SUGT1 chr13:53227181 3'AG 53227181 Downstream 42bp
chr13 53227222 53227222 1 + C T SKCM 53227221 + 53227201 53227241 41 ATGCCCTAATCGACGAGGACCCCCAGGCGGCGTTAGAGGTG ATGCCCTAATCGACGAGGACCTCCAGGCGGCGTTAGAGGTG < 41bp 0.579640446046462 0.785115665046731 0.1632199 0.94761294 prediction 0.410950438000537 Functional Gain - SUGT1 ENSG00000165416 CDS Human protein_coding chr13:53227221 chr13:53227222 nonsynonymous SNV 0.987 3 22 hm5C_associated_SNPs_126976 0 0 1 0 2 SUGT1 chr13:53227238 5'GT 53227238 Upstream 17bp
chr12 31237967 31237967 1 + C G rs140186422 31237966 + 31237946 31237986 41 GGGAGATGCTAGAGACAGGCCCGGAGGCTGAGCGGCTGGAG GGGAGATGCTAGAGACAGGCCGGGAGGCTGAGCGGCTGGAG < 41bp 0.665253187629194 0.870728112274883 0.89111906 0.9075227 prediction 0.410949849291377 Functional Gain - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31237966 chr12:31237967 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_126978 0 0 1 0 2 DDX11 chr12:31237903 3'AG 31237903 Downstream 65bp
chr12 31237967 31237967 1 + C G rs140186422 31237966 + 31237946 31237986 41 GGGAGATGCTAGAGACAGGCCCGGAGGCTGAGCGGCTGGAG GGGAGATGCTAGAGACAGGCCGGGAGGCTGAGCGGCTGGAG < 41bp 0.665253187629194 0.870728112274883 0.89111906 0.9075227 prediction 0.410949849291377 Functional Gain - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31237966 chr12:31237967 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_126978 0 0 1 0 2 DDX11 chr12:31238060 5'GT 31238060 Upstream 94bp
chr2 233655500 233655500 1 + C T BRCA 233655499 + 233655479 233655519 41 AGAGATGATGAACGGGGTTACCGAAGGGTTCGCTCTGGCAG AGAGATGATGAACGGGGTTACTGAAGGGTTCGCTCTGGCAG < 41bp 0.455139206989988 0.70547298789477 0.8371576 0.43825823 prediction 0.41094597578954 Functional Gain - GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233655499 chr2:233655500 stopgain 1.000 1 22 hm5C_associated_SNPs_126979 0 0 1 0 2 GIGYF2 chr2:233655408 3'AG 233655408 Downstream 93bp
chr2 233655500 233655500 1 + C T BRCA 233655499 + 233655479 233655519 41 AGAGATGATGAACGGGGTTACCGAAGGGTTCGCTCTGGCAG AGAGATGATGAACGGGGTTACTGAAGGGTTCGCTCTGGCAG < 41bp 0.455139206989988 0.70547298789477 0.8371576 0.43825823 prediction 0.41094597578954 Functional Gain - GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233655499 chr2:233655500 stopgain 1.000 1 22 hm5C_associated_SNPs_126979 0 0 1 0 2 GIGYF2 chr2:233655426 3'AG 233655426 Downstream 75bp
chr22 46685426 46685426 1 + C G rs78692941 46685422 + 46685402 46685442 41 GAGCTGCTCCTGCCCATCCGCTACCGGATCGTCCAGCTCGG GAGCTGCTCCTGCCCATCCGCTACGGGATCGTCCAGCTCGG < 41bp 0.409284500856582 0.705464195772581 0.12062058 0.12471688 prediction 0.410928391545163 Functional Gain - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46685422 chr22:46685426 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_126982 0 0 1 0 1 TTC38 chr22:46685458 5'GT 46685458 Upstream 33bp
chr3 121289572 121289572 1 + A G UCEC 121289569 + 121289549 121289589 41 ATTTCAGAAACCATGAGGAACAGAATGGCCCCAGAGAATCC ATTTCAGAAACCATGAGGAACAGGATGGCCCCAGAGAATCC < 41bp 0.596106231157539 0.801569259827163 0.05994284 0.10785216 prediction 0.410926057339249 Functional Gain - ARGFX ENSG00000186103 CDS Human protein_coding chr3:121289569 chr3:121289572 synonymous SNV . 0 24 hm5C_associated_SNPs_126983 0 0 0 0 2 ARGFX chr3:121289549 3'AG 121289549 Downstream 24bp
chr3 121289572 121289572 1 + A G UCEC 121289569 + 121289549 121289589 41 ATTTCAGAAACCATGAGGAACAGAATGGCCCCAGAGAATCC ATTTCAGAAACCATGAGGAACAGGATGGCCCCAGAGAATCC < 41bp 0.596106231157539 0.801569259827163 0.05994284 0.10785216 prediction 0.410926057339249 Functional Gain - ARGFX ENSG00000186103 CDS Human protein_coding chr3:121289569 chr3:121289572 synonymous SNV . 0 24 hm5C_associated_SNPs_126983 0 0 0 0 2 ARGFX chr3:121289663 5'GT 121289663 Upstream 92bp
chr6 101841694 101841694 1 + C G rs139921667 101841690 + 101841670 101841710 41 GGACCACCCCACCCCCTCCCCGCCCACCTCACCCCTAGCTC GGACCACCCCACCCCCTCCCCGCCGACCTCACCCCTAGCTC < 41bp 0.412723771094061 0.705459545025247 0.022642791 0.06385976 prediction 0.410919090050495 Functional Gain - ASCC3;GRIK2 ENSG00000238999;ENSG00000164418 intergenic Human other chr6:101841690 chr6:101841694 . . 0 25 hm5C_associated_SNPs_126986 0 0 0 0 1 ASCC3;GRIK2 chr6:101841713 5'GT 101841713 Upstream 20bp
chr17 73736900 73736900 1 + C T STAD 73736899 + 73736879 73736919 41 CGAGGTCTACAGGCAGATCTCCGGTGTACACAAGCTCCAGC CGAGGTCTACAGGCAGATCTCTGGTGTACACAAGCTCCAGC < 41bp 0.59578899901319 0.801247978506024 0.87918913 0.6227519 prediction 0.410917958985668 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73736899 chr17:73736900 synonymous SNV . 0 22 hm5C_associated_SNPs_126987 0 0 0 0 2 ITGB4 chr17:73736874 3'AG 73736874 Downstream 27bp
chr17 73736900 73736900 1 + C T STAD 73736899 + 73736879 73736919 41 CGAGGTCTACAGGCAGATCTCCGGTGTACACAAGCTCCAGC CGAGGTCTACAGGCAGATCTCTGGTGTACACAAGCTCCAGC < 41bp 0.59578899901319 0.801247978506024 0.87918913 0.6227519 prediction 0.410917958985668 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73736899 chr17:73736900 synonymous SNV . 0 22 hm5C_associated_SNPs_126987 0 0 0 0 2 ITGB4 chr17:73736932 5'GT 73736932 Upstream 33bp
chr19 50027789 50027789 1 + C A COAD 50027788 + 50027768 50027808 41 CCCCTCCATGCGCCTGAAGGCCCGACCCAGCAGCCCTGGCT CCCCTCCATGCGCCTGAAGGCACGACCCAGCAGCCCTGGCT < 41bp 0.634793490310158 0.840250584145696 0.10709861 0.11824861 prediction 0.410914187671078 Functional Gain - FCGRT ENSG00000104870 CDS Human protein_coding chr19:50027788 chr19:50027789 synonymous SNV . 0 22 hm5C_associated_SNPs_126989 0 0 1 0 1 FCGRT chr19:50027764 3'AG 50027764 Downstream 26bp
chr4 81952673 81952673 1 + C T GBM 81952672 + 81952652 81952692 41 GCGGCCCGGACACCGGGCTCCCTGGAGGGAGGCTCGCAGCC GCGGCCCGGACACCGGGCTCCTTGGAGGGAGGCTCGCAGCC < 41bp 0.536290123535522 0.741745881287703 0.5875889 0.70019394 prediction 0.410911515504363 Functional Gain - BMP3 ENSG00000152785 CDS Human protein_coding chr4:81952672 chr4:81952673 synonymous SNV . 0 22 hm5C_associated_SNPs_126991 0 0 0 0 1 BMP3 chr4:81952754 5'GT 81952754 Upstream 82bp
chr1 164769004 164769004 1 + C T SKCM 164769003 + 164768983 164769023 41 AAGCCGGACCAGGCCCATCTCCCCAAAGGAGATTGAGCGGA AAGCCGGACCAGGCCCATCTCTCCAAAGGAGATTGAGCGGA < 41bp 0.661267804700463 0.866721106691695 0.27524298 0.97540057 prediction 0.410906603982464 Functional Gain - PBX1 ENSG00000185630 CDS Human protein_coding chr1:164769003 chr1:164769004 synonymous SNV . 0 22 hm5C_associated_SNPs_126992 0 0 0 0 1 PBX1 chr1:164768936 3'AG 164768936 Downstream 69bp
chr16 88781504 88781504 1 + C T SKCM 88781503 + 88781483 88781523 41 ATCCTGGCTGAGGCCCAGCTCCGCACACAGAGGTACTGGGG ATCCTGGCTGAGGCCCAGCTCTGCACACAGAGGTACTGGGG < 41bp 0.601864870579769 0.807314985027937 0.24079886 0.33328313 prediction 0.410900228896335 Functional Gain - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781503 chr16:88781504 nonsynonymous SNV 0.889 4 22 hm5C_associated_SNPs_126993 0 0 1 0 2 CTU2 chr16:88781456 3'AG 88781456 Downstream 49bp
chr16 88781504 88781504 1 + C T SKCM 88781503 + 88781483 88781523 41 ATCCTGGCTGAGGCCCAGCTCCGCACACAGAGGTACTGGGG ATCCTGGCTGAGGCCCAGCTCTGCACACAGAGGTACTGGGG < 41bp 0.601864870579769 0.807314985027937 0.24079886 0.33328313 prediction 0.410900228896335 Functional Gain - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781503 chr16:88781504 nonsynonymous SNV 0.889 4 22 hm5C_associated_SNPs_126993 0 0 1 0 2 CTU2 chr16:88781514 5'GT 88781514 Upstream 11bp
chr6 31540609 31540609 1 + T C GBM 31540607 + 31540587 31540627 41 GGCTGCTGCTGGTTCTGCTGCCTGGGGCCCAGGTGAGGCAG GGCTGCTGCTGGTTCTGCTGCCCGGGGCCCAGGTGAGGCAG < 41bp 0.520501689040684 0.725950970930408 0.35017928 0.58437234 prediction 0.410898563779449 Functional Gain - LTA ENSG00000226979 CDS Human protein_coding chr6:31540607 chr6:31540609 synonymous SNV . 0 23 hm5C_associated_SNPs_126994 0 0 0 0 2 LTA chr6:31540511 3'AG 31540511 Downstream 99bp
chr6 31540609 31540609 1 + T C GBM 31540607 + 31540587 31540627 41 GGCTGCTGCTGGTTCTGCTGCCTGGGGCCCAGGTGAGGCAG GGCTGCTGCTGGTTCTGCTGCCCGGGGCCCAGGTGAGGCAG < 41bp 0.520501689040684 0.725950970930408 0.35017928 0.58437234 prediction 0.410898563779449 Functional Gain - LTA ENSG00000226979 CDS Human protein_coding chr6:31540607 chr6:31540609 synonymous SNV . 0 23 hm5C_associated_SNPs_126994 0 0 0 0 2 LTA chr6:31540618 5'GT 31540618 Upstream 10bp
chr4 41937516 41937516 1 + C T rs546187136 41937515 + 41937495 41937535 41 AGCCCCCATGGCAGATACGACCCCGAACGGCCCCCAAGGGG AGCCCCCATGGCAGATACGACTCCGAACGGCCCCCAAGGGG < 41bp 0.573784207776571 0.77922289746626 0.087940395 0.58628565 prediction 0.410877379379377 Functional Gain - TMEM33 ENSG00000109133 CDS Human protein_coding chr4:41937515 chr4:41937516 synonymous SNV . 0 22 hm5C_associated_SNPs_126997 0 0 1 0 1 TMEM33 chr4:41937546 5'GT 41937546 Upstream 31bp
chr10 81371362 81371362 1 + C G rs532407917 81371361 + 81371341 81371381 41 GGAGACCCCACAACCTCCAGCCGGAGGCCTGAAGCATGAGG GGAGACCCCACAACCTCCAGCGGGAGGCCTGAAGCATGAGG < 41bp 0.554737240914546 0.760172367555343 0.7948964 0.908697 prediction 0.410870253281592 Functional Gain - SFTPA1 ENSG00000122852 UTR5 Human protein_coding chr10:81371361 chr10:81371362 . . 0 22 hm5C_associated_SNPs_127001 0 0 0 0 4 SFTPA1 chr10:81371335 3'AG 81371335 Downstream 28bp
chr10 81371362 81371362 1 + C G rs532407917 81371361 + 81371341 81371381 41 GGAGACCCCACAACCTCCAGCCGGAGGCCTGAAGCATGAGG GGAGACCCCACAACCTCCAGCGGGAGGCCTGAAGCATGAGG < 41bp 0.554737240914546 0.760172367555343 0.7948964 0.908697 prediction 0.410870253281592 Functional Gain - SFTPA1 ENSG00000122852 UTR5 Human protein_coding chr10:81371361 chr10:81371362 . . 0 22 hm5C_associated_SNPs_127001 0 0 0 0 4 SFTPA1 chr10:81371338 3'AG 81371338 Downstream 25bp
chr10 81371362 81371362 1 + C G rs532407917 81371361 + 81371341 81371381 41 GGAGACCCCACAACCTCCAGCCGGAGGCCTGAAGCATGAGG GGAGACCCCACAACCTCCAGCGGGAGGCCTGAAGCATGAGG < 41bp 0.554737240914546 0.760172367555343 0.7948964 0.908697 prediction 0.410870253281592 Functional Gain - SFTPA1 ENSG00000122852 UTR5 Human protein_coding chr10:81371361 chr10:81371362 . . 0 22 hm5C_associated_SNPs_127001 0 0 0 0 4 SFTPA1 chr10:81371390 5'GT 81371390 Upstream 29bp
chr10 81371362 81371362 1 + C G rs532407917 81371361 + 81371341 81371381 41 GGAGACCCCACAACCTCCAGCCGGAGGCCTGAAGCATGAGG GGAGACCCCACAACCTCCAGCGGGAGGCCTGAAGCATGAGG < 41bp 0.554737240914546 0.760172367555343 0.7948964 0.908697 prediction 0.410870253281592 Functional Gain - SFTPA1 ENSG00000122852 UTR5 Human protein_coding chr10:81371361 chr10:81371362 . . 0 22 hm5C_associated_SNPs_127001 0 0 0 0 4 SFTPA1 chr10:81371397 5'GT 81371397 Upstream 36bp
chr12 122614147 122614147 1 + A G OV 122614144 + 122614124 122614164 41 TTTGCCCACAGCTACAGCAGCACAAGGATGAGGACCTCTCC TTTGCCCACAGCTACAGCAGCACGAGGATGAGGACCTCTCC < 41bp 0.607264315130809 0.81269298970828 0.29327756 0.29854953 prediction 0.410857349154943 Functional Gain - MLXIP ENSG00000175727 CDS Human protein_coding chr12:122614144 chr12:122614147 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_127004 0 0 1 0 2 MLXIP chr12:122614135 3'AG 122614135 Downstream 13bp
chr12 122614147 122614147 1 + A G OV 122614144 + 122614124 122614164 41 TTTGCCCACAGCTACAGCAGCACAAGGATGAGGACCTCTCC TTTGCCCACAGCTACAGCAGCACGAGGATGAGGACCTCTCC < 41bp 0.607264315130809 0.81269298970828 0.29327756 0.29854953 prediction 0.410857349154943 Functional Gain - MLXIP ENSG00000175727 CDS Human protein_coding chr12:122614144 chr12:122614147 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_127004 0 0 1 0 2 MLXIP chr12:122614176 5'GT 122614176 Upstream 30bp
chr3 52455721 52455721 1 + A G rs35944133 52455718 + 52455698 52455738 41 AATGTCCACAGTGTAACAATCGAAAAGAGTTTCCTCAAGAA AATGTCCACAGTGTAACAATCGAGAAGAGTTTCCTCAAGAA < 41bp 0.590628633191209 0.796046292143038 0.15740529 0.37745163 prediction 0.410835317903659 Functional Gain - PHF7 ENSG00000010318 CDS Human protein_coding chr3:52455718 chr3:52455721 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_127010 0 0 0 0 2 PHF7 chr3:52455664 3'AG 52455664 Downstream 58bp
chr3 52455721 52455721 1 + A G rs35944133 52455718 + 52455698 52455738 41 AATGTCCACAGTGTAACAATCGAAAAGAGTTTCCTCAAGAA AATGTCCACAGTGTAACAATCGAGAAGAGTTTCCTCAAGAA < 41bp 0.590628633191209 0.796046292143038 0.15740529 0.37745163 prediction 0.410835317903659 Functional Gain - PHF7 ENSG00000010318 CDS Human protein_coding chr3:52455718 chr3:52455721 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_127010 0 0 0 0 2 PHF7 chr3:52455770 5'GT 52455770 Upstream 50bp
chr1 10510334 10510334 1 + C T rs182159138 10510333 + 10510313 10510353 41 GCTCTCCGGGGCCACGGCCACCGCTGCCCTGCCCCTGGAGG GCTCTCCGGGGCCACGGCCACTGCTGCCCTGCCCCTGGAGG < 41bp 0.493284487434466 0.705416426114396 0.32796943 0.31253272 prediction 0.410832852228793 Functional Gain - CORT ENSG00000241563 CDS Human protein_coding chr1:10510333 chr1:10510334 synonymous SNV . 0 22 hm5C_associated_SNPs_127011 0 0 0 0 1 CORT chr1:10510379 5'GT 10510379 Upstream 46bp
chr8 2040212 2040212 1 + A G UCEC 2040209 + 2040189 2040229 41 CGGGTCGGGTTCTTGCTTCCCGAAACACCAAGACGTCGGTG CGGGTCGGGTTCTTGCTTCCCGAGACACCAAGACGTCGGTG < 41bp 0.619224728600459 0.824628873364996 0.2040551 0.7650639 prediction 0.410808289529074 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2040209 chr8:2040212 nonsynonymous SNV 0.445 2 24 hm5C_associated_SNPs_127016 0 0 0 0 1 MYOM2 chr8:2040174 3'AG 2040174 Downstream 39bp
chrX 106890893 106890893 1 + C T LUSC 106890892 + 106890872 106890912 41 CTTGACTCATGGAATCTTCTCCGGTCCTGCTATTTCTCGCA CTTGACTCATGGAATCTTCTCTGGTCCTGCTATTTCTCGCA < 41bp 0.460256961057344 0.705401496573916 0.41187915 0.29313183 prediction 0.410802993147832 Functional Gain - PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106890892 chrX:106890893 synonymous SNV . 0 22 hm5C_associated_SNPs_127018 0 0 1 0 1 PRPS1 chrX:106890836 3'AG 106890836 Downstream 58bp
chr12 57908819 57908819 1 + A G KIRC 57908816 + 57908796 57908836 41 AGGTGAATGAGCCCTGGAAGCGGATTAAAGGCAGTGAGGCT AGGTGAATGAGCCCTGGAAGCGGGTTAAAGGCAGTGAGGCT < 41bp 0.605146103146209 0.810546208793191 0.6913889 0.8024753 prediction 0.410800211293965 Functional Gain - MARS ENSG00000166986 CDS Human protein_coding chr12:57908816 chr12:57908819 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_127022 0 0 1 0 2 MARS chr12:57908737 3'AG 57908737 Downstream 83bp
chr12 57908819 57908819 1 + A G KIRC 57908816 + 57908796 57908836 41 AGGTGAATGAGCCCTGGAAGCGGATTAAAGGCAGTGAGGCT AGGTGAATGAGCCCTGGAAGCGGGTTAAAGGCAGTGAGGCT < 41bp 0.605146103146209 0.810546208793191 0.6913889 0.8024753 prediction 0.410800211293965 Functional Gain - MARS ENSG00000166986 CDS Human protein_coding chr12:57908816 chr12:57908819 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_127022 0 0 1 0 2 MARS chr12:57908841 5'GT 57908841 Upstream 23bp
chr7 98254299 98254299 1 + T G KICH 98254296 + 98254276 98254316 41 TCCCACTCCGCACAAACTACCTATACGGCAAGATCAAGAAG TCCCACTCCGCACAAACTACCTAGACGGCAAGATCAAGAAG < 41bp 0.309864737510753 0.70538826292076 0.022009522 0.063571095 prediction 0.41077652584152 Functional Gain - NPTX2 ENSG00000106236 CDS Human protein_coding chr7:98254296 chr7:98254299 nonsynonymous SNV 0.961 4 24 hm5C_associated_SNPs_127028 0 0 1 0 1 NPTX2 chr7:98254234 3'AG 98254234 Downstream 66bp
chrX 153678858 153678858 1 + C T rs782244383 153678857 + 153678837 153678877 41 GTCACCGGGACTCCAGGCACCCGCTCCCCTGCGACCATGCC GTCACCGGGACTCCAGGCACCTGCTCCCCTGCGACCATGCC < 41bp 0.495024028420746 0.705387761925244 0.014735043 0.054603368 prediction 0.410775523850489 Functional Gain - FAM50A ENSG00000071859 UTR3 Human protein_coding chrX:153678857 chrX:153678858 . . 0 22 hm5C_associated_SNPs_127029 0 0 1 0 1 FAM50A chrX:153678772 3'AG 153678772 Downstream 87bp
chr17 61681910 61681910 1 + T C UCEC 61681908 + 61681888 61681928 41 TCTCAGAAGGAGGCCCCAACCCTGAGCACAACAGCAACCTG TCTCAGAAGGAGGCCCCAACCCCGAGCACAACAGCAACCTG < 41bp 0.661618050305767 0.86700448325194 0.087206334 0.18280202 prediction 0.410772865892346 Functional Gain - TACO1 ENSG00000136463 CDS Human protein_coding chr17:61681908 chr17:61681910 synonymous SNV . 0 23 hm5C_associated_SNPs_127030 0 0 1 0 2 TACO1 chr17:61681894 3'AG 61681894 Downstream 17bp
chr17 61681910 61681910 1 + T C UCEC 61681908 + 61681888 61681928 41 TCTCAGAAGGAGGCCCCAACCCTGAGCACAACAGCAACCTG TCTCAGAAGGAGGCCCCAACCCCGAGCACAACAGCAACCTG < 41bp 0.661618050305767 0.86700448325194 0.087206334 0.18280202 prediction 0.410772865892346 Functional Gain - TACO1 ENSG00000136463 CDS Human protein_coding chr17:61681908 chr17:61681910 synonymous SNV . 0 23 hm5C_associated_SNPs_127030 0 0 1 0 2 TACO1 chr17:61682000 5'GT 61682000 Upstream 91bp
chr2 44933479 44933479 1 + T G PRAD 44933477 + 44933457 44933497 41 ATGACATGCTTGGCTGGGCTCATGGTAGGTCTTTTCTCCAT ATGACATGCTTGGCTGGGCTCAGGGTAGGTCTTTTCTCCAT < 41bp 0.702675710656258 0.908055548576 0.7435707 0.93218535 prediction 0.410759675839485 Functional Gain - CAMKMT ENSG00000143919 CDS Human protein_coding chr2:44933477 chr2:44933479 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_127034 0 0 1 0 2 CAMKMT chr2:44933426 3'AG 44933426 Downstream 54bp
chr2 44933479 44933479 1 + T G PRAD 44933477 + 44933457 44933497 41 ATGACATGCTTGGCTGGGCTCATGGTAGGTCTTTTCTCCAT ATGACATGCTTGGCTGGGCTCAGGGTAGGTCTTTTCTCCAT < 41bp 0.702675710656258 0.908055548576 0.7435707 0.93218535 prediction 0.410759675839485 Functional Gain - CAMKMT ENSG00000143919 CDS Human protein_coding chr2:44933477 chr2:44933479 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_127034 0 0 1 0 2 CAMKMT chr2:44933480 5'GT 44933480 Upstream 2bp
chr1 25818071 25818071 1 + C A STAD 25818070 + 25818050 25818090 41 AAAGCGGCAGCTCGAGATTGCCCAAGGTAGGAGAACGTGGG AAAGCGGCAGCTCGAGATTGCACAAGGTAGGAGAACGTGGG < 41bp 0.438840644593004 0.705362413094022 0.375538 0.27416644 prediction 0.410724826188043 Functional Gain - TMEM57 ENSG00000204178 CDS Human protein_coding chr1:25818070 chr1:25818071 synonymous SNV . 0 22 hm5C_associated_SNPs_127039 0 0 1 0 1 TMEM57 chr1:25818075 5'GT 25818075 Upstream 5bp
chr17 79424518 79424518 1 + C A rs147880174 79424517 + 79424497 79424537 41 AGCAGGGCTGCTGCTGCACACCGGGGCCAGTGTGGCCGTGC AGCAGGGCTGCTGCTGCACACAGGGGCCAGTGTGGCCGTGC < 41bp 0.432128507615022 0.705354762734868 0.91228795 0.93762463 prediction 0.410709525469737 Functional Gain - BAHCC1 ENSG00000171282 CDS Human other chr17:79424517 chr17:79424518 synonymous SNV . 0 22 hm5C_associated_SNPs_127041 0 0 0 0 2 BAHCC1 chr17:79424436 3'AG 79424436 Downstream 83bp
chr17 79424518 79424518 1 + C A rs147880174 79424517 + 79424497 79424537 41 AGCAGGGCTGCTGCTGCACACCGGGGCCAGTGTGGCCGTGC AGCAGGGCTGCTGCTGCACACAGGGGCCAGTGTGGCCGTGC < 41bp 0.432128507615022 0.705354762734868 0.91228795 0.93762463 prediction 0.410709525469737 Functional Gain - BAHCC1 ENSG00000171282 CDS Human other chr17:79424517 chr17:79424518 synonymous SNV . 0 22 hm5C_associated_SNPs_127041 0 0 0 0 2 BAHCC1 chr17:79424440 3'AG 79424440 Downstream 79bp
chr1 172425603 172425603 1 + T C UCEC 172425600 + 172425580 172425620 41 TGCTGCTCAGAAACCAACAGCTGTGCTCCACATGTCAAGAA TGCTGCTCAGAAACCAACAGCTGCGCTCCACATGTCAAGAA < 41bp 0.487824332518828 0.70534964658413 0.23235503 0.283705 prediction 0.41069929316826 Functional Gain - C1orf105 ENSG00000180999 CDS Human protein_coding chr1:172425600 chr1:172425603 nonsynonymous SNV 0.439 4 24 hm5C_associated_SNPs_127044 0 0 0 0 2 C1orf105 chr1:172425555 3'AG 172425555 Downstream 49bp
chr1 172425603 172425603 1 + T C UCEC 172425600 + 172425580 172425620 41 TGCTGCTCAGAAACCAACAGCTGTGCTCCACATGTCAAGAA TGCTGCTCAGAAACCAACAGCTGCGCTCCACATGTCAAGAA < 41bp 0.487824332518828 0.70534964658413 0.23235503 0.283705 prediction 0.41069929316826 Functional Gain - C1orf105 ENSG00000180999 CDS Human protein_coding chr1:172425600 chr1:172425603 nonsynonymous SNV 0.439 4 24 hm5C_associated_SNPs_127044 0 0 0 0 2 C1orf105 chr1:172425629 5'GT 172425629 Upstream 27bp
chr20 47852935 47852935 1 + T C UCEC 47852933 + 47852913 47852953 41 ACCGGGTGGGGCGAACAGCACGTGCTGGCAGGGCTGGGCGC ACCGGGTGGGGCGAACAGCACGCGCTGGCAGGGCTGGGCGC < 41bp 0.657900496252479 0.86324968018336 0.26445472 0.18916774 prediction 0.410698367861762 Functional Gain - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47852933 chr20:47852935 synonymous SNV . 0 23 hm5C_associated_SNPs_127046 0 0 1 0 1 DDX27 chr20:47852870 3'AG 47852870 Downstream 66bp
chr15 76634149 76634149 1 + T C UCEC 76634146 + 76634126 76634166 41 CAGCTCCCGGACACCCCCAACAGTATGGTGCCGAGTCCCGT CAGCTCCCGGACACCCCCAACAGCATGGTGCCGAGTCCCGT < 41bp 0.511307063349852 0.71664173638969 0.31321323 0.33410102 prediction 0.410669346079676 Functional Gain - ISL2 ENSG00000159556 CDS Human protein_coding chr15:76634146 chr15:76634149 synonymous SNV . 0 24 hm5C_associated_SNPs_127050 0 0 1 0 1 ISL2 chr15:76634060 3'AG 76634060 Downstream 90bp
chr1 75608822 75608822 1 + T G LUAD 75608818 + 75608798 75608838 41 TGTAGAAGGTATGGAACTCGCTGCTCTCGATGTGGGAGACA TGTAGAAGGTATGGAACTCGCTGCGCTCGATGTGGGAGACA < 41bp 0.524182766247792 0.729512997772071 0.046314865 0.06875029 prediction 0.410660463048557 Functional Gain - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75608818 chr1:75608822 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_127053 0 0 0 0 1 LHX8 chr1:75608803 3'AG 75608803 Downstream 20bp
chr6 142519682 142519682 1 + T C LGG 142519679 + 142519659 142519699 41 AGCAACATGCCATCAGGCAACTATACTGGAATACAGATTCC AGCAACATGCCATCAGGCAACTACACTGGAATACAGATTCC < 41bp 0.578596700645277 0.783924478362706 0.18778902 0.53099555 prediction 0.410655555434859 Functional Gain - VTA1 ENSG00000009844 CDS Human protein_coding chr6:142519679 chr6:142519682 synonymous SNV . 0 24 hm5C_associated_SNPs_127055 0 0 1 0 1 VTA1 chr6:142519752 5'GT 142519752 Upstream 71bp
chr8 27358495 27358495 1 + C A rs139234214 27358494 + 27358474 27358514 41 GGACCAGAGGGTGCCACTACCCGGCTTATGAAAGGAGAGAT GGACCAGAGGGTGCCACTACCAGGCTTATGAAAGGAGAGAT < 41bp 0.431998490306204 0.705326531124484 0.3594001 0.88700294 prediction 0.410653062248969 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27358494 chr8:27358495 synonymous SNV . 0 22 hm5C_associated_SNPs_127056 0 0 1 0 4 EPHX2;EPHX2 chr8:27358443 3'AG 27358443 Downstream 53bp
chr8 27358495 27358495 1 + C A rs139234214 27358494 + 27358474 27358514 41 GGACCAGAGGGTGCCACTACCCGGCTTATGAAAGGAGAGAT GGACCAGAGGGTGCCACTACCAGGCTTATGAAAGGAGAGAT < 41bp 0.431998490306204 0.705326531124484 0.3594001 0.88700294 prediction 0.410653062248969 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27358494 chr8:27358495 synonymous SNV . 0 22 hm5C_associated_SNPs_127056 0 0 1 0 4 EPHX2 chr8:27358445 3'AG 27358445 Downstream 51bp
chr8 27358495 27358495 1 + C A rs139234214 27358494 + 27358474 27358514 41 GGACCAGAGGGTGCCACTACCCGGCTTATGAAAGGAGAGAT GGACCAGAGGGTGCCACTACCAGGCTTATGAAAGGAGAGAT < 41bp 0.431998490306204 0.705326531124484 0.3594001 0.88700294 prediction 0.410653062248969 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27358494 chr8:27358495 synonymous SNV . 0 22 hm5C_associated_SNPs_127056 0 0 1 0 4 EPHX2 chr8:27358481 3'AG 27358481 Downstream 15bp
chr8 27358495 27358495 1 + C A rs139234214 27358494 + 27358474 27358514 41 GGACCAGAGGGTGCCACTACCCGGCTTATGAAAGGAGAGAT GGACCAGAGGGTGCCACTACCAGGCTTATGAAAGGAGAGAT < 41bp 0.431998490306204 0.705326531124484 0.3594001 0.88700294 prediction 0.410653062248969 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27358494 chr8:27358495 synonymous SNV . 0 22 hm5C_associated_SNPs_127056 0 0 1 0 4 EPHX2 chr8:27358527 5'GT 27358527 Upstream 33bp
chr12 54966511 54966511 1 + C T UCEC 54966510 + 54966490 54966530 41 ACAGTCCATTGCTTCTTGCTCCGCACAGGGATGGTGGTAGG ACAGTCCATTGCTTCTTGCTCTGCACAGGGATGGTGGTAGG < 41bp 0.439826196207197 0.70532485952596 0.014676511 0.028295755 prediction 0.41064971905192 Functional Gain - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54966510 chr12:54966511 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_127059 0 0 0 0 1 PDE1B chr12:54966525 5'GT 54966525 Upstream 15bp
chrX 16846272 16846272 1 + C A LUSC 16846268 + 16846248 16846288 41 TGAAGATCCTGCAGAAGAAGCAAGCCCAGATTGTGAAAGAG TGAAGATCCTGCAGAAGAAGCAAGACCAGATTGTGAAAGAG < 41bp 0.294428296263999 0.705322344594762 0.22555375 0.3278479 prediction 0.410644689189525 Functional Gain - TXLNG ENSG00000086712 CDS Human protein_coding chrX:16846268 chrX:16846272 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_127061 0 0 1 0 1 TXLNG chrX:16846217 3'AG 16846217 Downstream 56bp
chr9 104315005 104315005 1 + A G UCEC 104315002 + 104314982 104315022 41 TGATGGACGGAAAAAGGAAGCAGAAATTATCAAACAATTGA TGATGGACGGAAAAAGGAAGCAGGAATTATCAAACAATTGA < 41bp 0.488538525350613 0.70532027483632 0.060407132 0.026976913 prediction 0.41064054967264 Functional Gain - RNF20 ENSG00000155827 CDS Human protein_coding chr9:104315002 chr9:104315005 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_127062 0 0 0 0 1 RNF20 chr9:104315035 5'GT 104315035 Upstream 31bp
chr12 75728661 75728661 1 + C T UCEC 75728660 + 75728640 75728680 41 GCGTGGCAAAGTCAACCCTCCCGCGGCCGACATGAAATACA GCGTGGCAAAGTCAACCCTCCTGCGGCCGACATGAAATACA < 41bp 0.476416685532713 0.70531702870641 0.19382572 0.26199806 prediction 0.410634057412819 Functional Gain - GLIPR1L1 ENSG00000173401 CDS Human protein_coding chr12:75728660 chr12:75728661 synonymous SNV . 0 22 hm5C_associated_SNPs_127065 0 0 0 0 1 GLIPR1L1 chr12:75728682 5'GT 75728682 Upstream 22bp
chr2 62363011 62363011 1 + C A LUSC 62363010 + 62362990 62363030 41 TTTGATGAGGTCAAAGTCAACCAAATTCTGAAGACGCTGTC TTTGATGAGGTCAAAGTCAACAAAATTCTGAAGACGCTGTC < 41bp 0.456026688874664 0.70530834190492 0.295781 0.25950867 prediction 0.41061668380984 Functional Gain - COMMD1 ENSG00000173163 CDS Human protein_coding chr2:62363010 chr2:62363011 nonsynonymous SNV 0.980 0 22 hm5C_associated_SNPs_127067 0 0 1 0 1 COMMD1 chr2:62362966 3'AG 62362966 Downstream 46bp
chr19 11658682 11658682 1 + C T rs117853664 11658681 + 11658661 11658701 41 AGCAGGAGCGGAAATTCGAGCCGGGGAAGCTAAGAGAAGGG AGCAGGAGCGGAAATTCGAGCTGGGGAAGCTAAGAGAAGGG < 41bp 0.615098612269942 0.820402740833696 0.8911757 0.79448044 prediction 0.410608257127507 Functional Gain - CNN1 ENSG00000130176 CDS Human protein_coding chr19:11658681 chr19:11658682 nonsynonymous SNV 0.915 2 22 hm5C_associated_SNPs_127068 0 0 0 0 2 CNN1 chr19:11658612 3'AG 11658612 Downstream 71bp
chr19 11658682 11658682 1 + C T rs117853664 11658681 + 11658661 11658701 41 AGCAGGAGCGGAAATTCGAGCCGGGGAAGCTAAGAGAAGGG AGCAGGAGCGGAAATTCGAGCTGGGGAAGCTAAGAGAAGGG < 41bp 0.615098612269942 0.820402740833696 0.8911757 0.79448044 prediction 0.410608257127507 Functional Gain - CNN1 ENSG00000130176 CDS Human protein_coding chr19:11658681 chr19:11658682 nonsynonymous SNV 0.915 2 22 hm5C_associated_SNPs_127068 0 0 0 0 2 CNN1 chr19:11658722 5'GT 11658722 Upstream 41bp
chr1 2427002 2427002 1 + A G COAD 2426999 + 2426979 2427019 41 GTCAGGACTCCCCGGGAGGCCAGAGCCGAGGGTAGGTGCCC GTCAGGACTCCCCGGGAGGCCAGGGCCGAGGGTAGGTGCCC < 41bp 0.613572504323615 0.818865374008271 0.4304729 0.8978901 prediction 0.410585739369312 Functional Gain - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2426999 chr1:2427002 nonsynonymous SNV 0.783 0 24 hm5C_associated_SNPs_127071 0 0 0 0 1 PLCH2 chr1:2426927 3'AG 2426927 Downstream 76bp
chr21 34787276 34787276 1 + T C UCEC 34787273 + 34787253 34787293 41 GCAGGTCCTGAGTTGGGAGCCAGTGGCCCTGAGCAATAGCA GCAGGTCCTGAGTTGGGAGCCAGCGGCCCTGAGCAATAGCA < 41bp 0.507635594782591 0.712927398459603 0.44680572 0.87702847 prediction 0.410583607354024 Functional Gain - IFNGR2 ENSG00000159128 CDS Human protein_coding chr21:34787273 chr21:34787276 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_127072 0 0 1 0 2 IFNGR2 chr21:34787195 3'AG 34787195 Downstream 82bp
chr21 34787276 34787276 1 + T C UCEC 34787273 + 34787253 34787293 41 GCAGGTCCTGAGTTGGGAGCCAGTGGCCCTGAGCAATAGCA GCAGGTCCTGAGTTGGGAGCCAGCGGCCCTGAGCAATAGCA < 41bp 0.507635594782591 0.712927398459603 0.44680572 0.87702847 prediction 0.410583607354024 Functional Gain - IFNGR2 ENSG00000159128 CDS Human protein_coding chr21:34787273 chr21:34787276 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_127072 0 0 1 0 2 IFNGR2 chr21:34787327 5'GT 34787327 Upstream 52bp
chr18 61569034 61569034 1 + T A LUAD 61569030 + 61569010 61569050 41 ATGGGGATACCAGGATGGTCCTGGTGAATGCTGTCTACTTC ATGGGGATACCAGGATGGTCCTGGAGAATGCTGTCTACTTC < 41bp 0.694451864344147 0.899742382150362 0.465113 0.43798468 prediction 0.41058103561243 Functional Gain - SERPINB2 ENSG00000197632;ENSG00000242550 CDS Human other chr18:61569030 chr18:61569034 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_127074 0 0 0 0 2 SERPINB2 chr18:61568974 3'AG 61568974 Downstream 61bp
chr18 61569034 61569034 1 + T A LUAD 61569030 + 61569010 61569050 41 ATGGGGATACCAGGATGGTCCTGGTGAATGCTGTCTACTTC ATGGGGATACCAGGATGGTCCTGGAGAATGCTGTCTACTTC < 41bp 0.694451864344147 0.899742382150362 0.465113 0.43798468 prediction 0.41058103561243 Functional Gain - SERPINB2 ENSG00000197632;ENSG00000242550 CDS Human other chr18:61569030 chr18:61569034 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_127074 0 0 0 0 2 SERPINB2 chr18:61569116 5'GT 61569116 Upstream 83bp
chr2 231115757 231115757 1 + C T SKCM 231115756 + 231115736 231115776 41 GCCCCAGGAAGCCTCTAGCTCCCTAGCAAGATGTGGGTCAG GCCCCAGGAAGCCTCTAGCTCTCTAGCAAGATGTGGGTCAG < 41bp 0.445036008095086 0.705290230968205 0.26088935 0.8955327 prediction 0.410580461936411 Functional Gain - SP140 ENSG00000079263 CDS Human protein_coding chr2:231115756 chr2:231115757 synonymous SNV . 0 22 hm5C_associated_SNPs_127075 0 0 0 0 2 SP140 chr2:231115696 3'AG 231115696 Downstream 62bp
chr2 231115757 231115757 1 + C T SKCM 231115756 + 231115736 231115776 41 GCCCCAGGAAGCCTCTAGCTCCCTAGCAAGATGTGGGTCAG GCCCCAGGAAGCCTCTAGCTCTCTAGCAAGATGTGGGTCAG < 41bp 0.445036008095086 0.705290230968205 0.26088935 0.8955327 prediction 0.410580461936411 Functional Gain - SP140 ENSG00000079263 CDS Human protein_coding chr2:231115756 chr2:231115757 synonymous SNV . 0 22 hm5C_associated_SNPs_127075 0 0 0 0 2 SP140 chr2:231115776 5'GT 231115776 Upstream 20bp
chr2 27529786 27529786 1 + C G rs528795152 27529785 + 27529765 27529805 41 ACCCGACCCTGCTCGAGAGCCCGCGCTAGAGTCGGGGAGGA ACCCGACCCTGCTCGAGAGCCGGCGCTAGAGTCGGGGAGGA < 41bp 0.68887544740579 0.894165583278882 0.35542643 0.9306196 prediction 0.410580271746184 Functional Gain - TRIM54 ENSG00000138100 UTR3 Human protein_coding chr2:27529785 chr2:27529786 . . 0 22 hm5C_associated_SNPs_127076 0 0 0 0 1 TRIM54 chr2:27529755 3'AG 27529755 Downstream 32bp
chr6 143784105 143784105 1 + C T UCEC 143784104 + 143784084 143784124 41 CTTAATGCAGCAACTGAATTCCGAGAGCCTCACAGCTCTGC CTTAATGCAGCAACTGAATTCTGAGAGCCTCACAGCTCTGC < 41bp 0.451921821781835 0.705287443777905 0.35054767 0.19852763 prediction 0.410574887555811 Functional Gain - PEX3 ENSG00000034693 CDS Human protein_coding chr6:143784104 chr6:143784105 synonymous SNV . 0 22 hm5C_associated_SNPs_127077 0 0 1 0 2 PEX3 chr6:143784053 3'AG 143784053 Downstream 53bp
chr6 143784105 143784105 1 + C T UCEC 143784104 + 143784084 143784124 41 CTTAATGCAGCAACTGAATTCCGAGAGCCTCACAGCTCTGC CTTAATGCAGCAACTGAATTCTGAGAGCCTCACAGCTCTGC < 41bp 0.451921821781835 0.705287443777905 0.35054767 0.19852763 prediction 0.410574887555811 Functional Gain - PEX3 ENSG00000034693 CDS Human protein_coding chr6:143784104 chr6:143784105 synonymous SNV . 0 22 hm5C_associated_SNPs_127077 0 0 1 0 2 PEX3 chr6:143784134 5'GT 143784134 Upstream 30bp
chr8 117887699 117887699 1 + A G rs16889209 117887696 + 117887676 117887716 41 GAAAGAAATTGAAGAGGACACACAAAAATGGAAATATATTC GAAAGAAATTGAAGAGGACACACGAAAATGGAAATATATTC < 41bp 0.497506502258784 0.705284853654914 0.036377877 0.12781736 prediction 0.410569707309828 Functional Gain - RAD21-AS1 ENSG00000253327 ncRNA_exonic Human antisense chr8:117887696 chr8:117887699 . . 0 24 hm5C_associated_SNPs_127081 0 0 0 0 1 RAD21-AS1 chr8:117887660 3'AG 117887660 Downstream 40bp
chr11 61505676 61505676 1 + C T SKCM 61505675 + 61505655 61505695 41 CCTGCAGCGAAGCACCAAGCCCAAAGTGAGCCCCCACCTGG CCTGCAGCGAAGCACCAAGCCTAAAGTGAGCCCCCACCTGG < 41bp 0.442776532073852 0.705280693180201 0.14921916 0.18610054 prediction 0.410561386360403 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61505675 chr11:61505676 synonymous SNV . 0 22 hm5C_associated_SNPs_127082 0 0 1 0 2 DAGLA chr11:61505607 3'AG 61505607 Downstream 70bp
chr11 61505676 61505676 1 + C T SKCM 61505675 + 61505655 61505695 41 CCTGCAGCGAAGCACCAAGCCCAAAGTGAGCCCCCACCTGG CCTGCAGCGAAGCACCAAGCCTAAAGTGAGCCCCCACCTGG < 41bp 0.442776532073852 0.705280693180201 0.14921916 0.18610054 prediction 0.410561386360403 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61505675 chr11:61505676 synonymous SNV . 0 22 hm5C_associated_SNPs_127082 0 0 1 0 2 DAGLA chr11:61505679 5'GT 61505679 Upstream 4bp
chr4 38870090 38870090 1 + C G rs574741037 38870089 + 38870069 38870109 41 CACCGCCTCCACTCGCAGCCCCCGGGATGGGTCCCACTCCC CACCGCCTCCACTCGCAGCCCGCGGGATGGGTCCCACTCCC < 41bp 0.653787266205721 0.859065854293481 0.7467251 0.9214082 prediction 0.410557176175521 Functional Gain - FAM114A1 ENSG00000197712 UTR5 Human protein_coding chr4:38870089 chr4:38870090 . . 0 22 hm5C_associated_SNPs_127085 0 0 1 0 2 FAM114A1 chr4:38870019 3'AG 38870019 Downstream 72bp
chr4 38870090 38870090 1 + C G rs574741037 38870089 + 38870069 38870109 41 CACCGCCTCCACTCGCAGCCCCCGGGATGGGTCCCACTCCC CACCGCCTCCACTCGCAGCCCGCGGGATGGGTCCCACTCCC < 41bp 0.653787266205721 0.859065854293481 0.7467251 0.9214082 prediction 0.410557176175521 Functional Gain - FAM114A1 ENSG00000197712 UTR5 Human protein_coding chr4:38870089 chr4:38870090 . . 0 22 hm5C_associated_SNPs_127085 0 0 1 0 2 FAM114A1 chr4:38870167 5'GT 38870167 Upstream 78bp
chr7 100771699 100771699 1 + T G UCEC 100771695 + 100771675 100771715 41 ATGCAGATGTCTCCAGCCCTCACCTGCCTAGTCCTGGGCCT ATGCAGATGTCTCCAGCCCTCACCGGCCTAGTCCTGGGCCT < 41bp 0.496218627146468 0.705272232324986 0.09346616 0.18620422 prediction 0.410544464649973 Functional Gain - SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100771695 chr7:100771699 nonsynonymous SNV 0.029 4 25 hm5C_associated_SNPs_127088 0 0 1 0 2 SERPINE1 chr7:100771674 3'AG 100771674 Downstream 26bp
chr7 100771699 100771699 1 + T G UCEC 100771695 + 100771675 100771715 41 ATGCAGATGTCTCCAGCCCTCACCTGCCTAGTCCTGGGCCT ATGCAGATGTCTCCAGCCCTCACCGGCCTAGTCCTGGGCCT < 41bp 0.496218627146468 0.705272232324986 0.09346616 0.18620422 prediction 0.410544464649973 Functional Gain - SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100771695 chr7:100771699 nonsynonymous SNV 0.029 4 25 hm5C_associated_SNPs_127088 0 0 1 0 2 SERPINE1 chr7:100771764 5'GT 100771764 Upstream 66bp
chr19 10870427 10870427 1 + C T SKCM 10870426 + 10870406 10870446 41 CCTCACAGGGACTTCCTTCCCCGCGGTTCAGGAATCGTCAC CCTCACAGGGACTTCCTTCCCTGCGGTTCAGGAATCGTCAC < 41bp 0.559820211642891 0.765089090972107 0.53986806 0.120886385 prediction 0.410537758658431 Functional Gain - DNM2 ENSG00000079805 CDS Human protein_coding chr19:10870426 chr19:10870427 nonsynonymous SNV 0.904 5 22 hm5C_associated_SNPs_127091 0 0 1 0 2 DNM2 chr19:10870414 3'AG 10870414 Downstream 14bp
chr19 10870427 10870427 1 + C T SKCM 10870426 + 10870406 10870446 41 CCTCACAGGGACTTCCTTCCCCGCGGTTCAGGAATCGTCAC CCTCACAGGGACTTCCTTCCCTGCGGTTCAGGAATCGTCAC < 41bp 0.559820211642891 0.765089090972107 0.53986806 0.120886385 prediction 0.410537758658431 Functional Gain - DNM2 ENSG00000079805 CDS Human protein_coding chr19:10870426 chr19:10870427 nonsynonymous SNV 0.904 5 22 hm5C_associated_SNPs_127091 0 0 1 0 2 DNM2 chr19:10870487 5'GT 10870487 Upstream 61bp
chr2 241569449 241569449 1 + T C rs150808237 241569447 + 241569427 241569467 41 AAGCTGGGCTTCTACGCCTACTTGGGCGTCCTGCTGGTGCT AAGCTGGGCTTCTACGCCTACTCGGGCGTCCTGCTGGTGCT < 41bp 0.642884852798909 0.848148713631479 0.6289491 0.402723 prediction 0.41052772166514 Functional Gain - GPR35 ENSG00000178623 CDS Human protein_coding chr2:241569447 chr2:241569449 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_127093 0 0 1 0 1 GPR35 chr2:241569366 3'AG 241569366 Downstream 84bp
chr16 28948647 28948647 1 + C T STAD 28948646 + 28948626 28948666 41 ACCTGACAGTGAGGAGGACTCCGAGTTCTATGAGAACGACT ACCTGACAGTGAGGAGGACTCTGAGTTCTATGAGAACGACT < 41bp 0.455735697423077 0.705263772704618 0.60297334 0.32369155 prediction 0.410527545409237 Functional Gain - CD19 ENSG00000177455 CDS Human protein_coding chr16:28948646 chr16:28948647 synonymous SNV 0.918 0 22 hm5C_associated_SNPs_127094 0 0 0 0 1 CD19 chr16:28948592 3'AG 28948592 Downstream 56bp
chr10 12123550 12123550 1 + C T rs138526346 12123549 + 12123529 12123569 41 CAAAATCAACCCCCTCTTCACCGGACAAGCCCTGCTGGAGA CAAAATCAACCCCCTCTTCACTGGACAAGCCCTGCTGGAGA < 41bp 0.635351886770339 0.840614599569605 0.40271306 0.3878783 prediction 0.410525425598532 Functional Gain - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12123549 chr10:12123550 synonymous SNV . 0 22 hm5C_associated_SNPs_127095 0 0 1 0 2 DHTKD1 chr10:12123471 3'AG 12123471 Downstream 80bp
chr10 12123550 12123550 1 + C T rs138526346 12123549 + 12123529 12123569 41 CAAAATCAACCCCCTCTTCACCGGACAAGCCCTGCTGGAGA CAAAATCAACCCCCTCTTCACTGGACAAGCCCTGCTGGAGA < 41bp 0.635351886770339 0.840614599569605 0.40271306 0.3878783 prediction 0.410525425598532 Functional Gain - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12123549 chr10:12123550 synonymous SNV . 0 22 hm5C_associated_SNPs_127095 0 0 1 0 2 DHTKD1 chr10:12123626 5'GT 12123626 Upstream 77bp
chr9 35681007 35681007 1 + C T CESC 35681006 + 35680986 35681026 41 CTACCGCCCAGCAGAGGTAGCCGAGACTGGAGCCTAGAGGC CTACCGCCCAGCAGAGGTAGCTGAGACTGGAGCCTAGAGGC < 41bp 0.479299773482419 0.705254180563147 0.9004939 0.89345956 prediction 0.410508361126295 Functional Gain - CA9 ENSG00000107159 CDS Human protein_coding chr9:35681006 chr9:35681007 synonymous SNV . 0 22 hm5C_associated_SNPs_127099 0 0 0 0 1 CA9 chr9:35680962 3'AG 35680962 Downstream 46bp
chr16 55360423 55360423 1 + C T LUAD 55360422 + 55360402 55360442 41 CCTTGGGCATCTATGGAGCACCCTATGCGGCCGCTGCAGCT CCTTGGGCATCTATGGAGCACTCTATGCGGCCGCTGCAGCT < 41bp 0.441820650967783 0.705253472674698 0.5347865 0.91159505 prediction 0.410506945349396 Functional Gain - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55360422 chr16:55360423 nonsynonymous SNV 0.966 5 22 hm5C_associated_SNPs_127100 0 0 0 0 1 IRX6 chr16:55360505 5'GT 55360505 Upstream 83bp
chr10 68686715 68686715 1 + T C HNSC 68686712 + 68686692 68686732 41 TAGGCTACTGAGCGGATCAGCTGTAGCACTGGTTATAGCCC TAGGCTACTGAGCGGATCAGCTGCAGCACTGGTTATAGCCC < 41bp 0.486952268312539 0.705253322910711 0.26186973 0.5530206 prediction 0.410506645821421 Functional Gain - LRRTM3 ENSG00000198739 CDS Human protein_coding chr10:68686712 chr10:68686715 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_127101 0 0 0 0 1 LRRTM3 chr10:68686679 3'AG 68686679 Downstream 37bp
chr8 11406593 11406593 1 + T C rs3816668 11406590 + 11406570 11406610 41 GGAAGAGAAGGCTATGTGCCCAGTAACTTTGTGGCCCGAGT GGAAGAGAAGGCTATGTGCCCAGCAACTTTGTGGCCCGAGT < 41bp 0.576267286850234 0.78151828000725 0.28210813 0.3320865 prediction 0.410501986314032 Functional Gain - BLK ENSG00000136573 CDS Human protein_coding chr8:11406590 chr8:11406593 synonymous SNV . 0 24 hm5C_associated_SNPs_127102 2 0 0 0 2 BLK chr8:11406533 3'AG 11406533 Downstream 61bp
chr8 11406593 11406593 1 + T C rs3816668 11406590 + 11406570 11406610 41 GGAAGAGAAGGCTATGTGCCCAGTAACTTTGTGGCCCGAGT GGAAGAGAAGGCTATGTGCCCAGCAACTTTGTGGCCCGAGT < 41bp 0.576267286850234 0.78151828000725 0.28210813 0.3320865 prediction 0.410501986314032 Functional Gain - BLK ENSG00000136573 CDS Human protein_coding chr8:11406590 chr8:11406593 synonymous SNV . 0 24 hm5C_associated_SNPs_127102 2 0 0 0 2 BLK chr8:11406631 5'GT 11406631 Upstream 39bp
chr19 1251849 1251849 1 + A G COAD 1251846 + 1251826 1251866 41 CTCTCTTTGTAGTCTCAGGCCTCAAGGCCGGAACAGTCCGT CTCTCTTTGTAGTCTCAGGCCTCGAGGCCGGAACAGTCCGT < 41bp 0.612300559801205 0.817550085669766 0.069573194 0.30274898 prediction 0.410499051737121 Functional Gain - MIDN ENSG00000167470 CDS Human protein_coding chr19:1251846 chr19:1251849 synonymous SNV . 0 24 hm5C_associated_SNPs_127103 0 0 1 0 2 MIDN chr19:1251838 3'AG 1251838 Downstream 12bp
chr19 1251849 1251849 1 + A G COAD 1251846 + 1251826 1251866 41 CTCTCTTTGTAGTCTCAGGCCTCAAGGCCGGAACAGTCCGT CTCTCTTTGTAGTCTCAGGCCTCGAGGCCGGAACAGTCCGT < 41bp 0.612300559801205 0.817550085669766 0.069573194 0.30274898 prediction 0.410499051737121 Functional Gain - MIDN ENSG00000167470 CDS Human protein_coding chr19:1251846 chr19:1251849 synonymous SNV . 0 24 hm5C_associated_SNPs_127103 0 0 1 0 2 MIDN chr19:1251900 5'GT 1251900 Upstream 52bp
chr10 44345174 44345174 1 + C A rs191167771 44345173 + 44345153 44345193 41 GATCCTGAGAACCAGATGCACCGGCCTGAGCTTTCGTCAGA GATCCTGAGAACCAGATGCACAGGCCTGAGCTTTCGTCAGA < 41bp 0.592264128339215 0.797512668573496 0.35606194 0.7093261 prediction 0.410497080468562 Functional Gain - LINC00619 ENSG00000204187 ncRNA_exonic Human lincRNA chr10:44345173 chr10:44345174 . . 0 22 hm5C_associated_SNPs_127104 0 0 0 0 1 LINC00619 chr10:44345122 3'AG 44345122 Downstream 53bp
chr1 36767168 36767168 1 + A G LUAD 36767165 + 36767145 36767185 41 TTGCAATAGCAGTTTCGAGCCAGAGGAAGAGGCTGGGGCAG TTGCAATAGCAGTTTCGAGCCAGGGGAAGAGGCTGGGGCAG < 41bp 0.606127343064977 0.811375415653019 0.9101895 0.90876174 prediction 0.410496145176084 Functional Gain - THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36767165 chr1:36767168 synonymous SNV . 0 24 hm5C_associated_SNPs_127105 0 0 1 0 1 THRAP3 chr1:36767154 3'AG 36767154 Downstream 15bp
chr10 60556180 60556180 1 + T C LUSC 60556177 + 60556157 60556197 41 TGTCTCCTCGGACTTGAAAGCAGTGGGGTTACCATAGCAAC TGTCTCCTCGGACTTGAAAGCAGCGGGGTTACCATAGCAAC < 41bp 0.51900411761721 0.724250397759584 0.33914036 0.40069437 prediction 0.410492560284749 Functional Gain - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60556177 chr10:60556180 synonymous SNV . 0 24 hm5C_associated_SNPs_127107 0 0 1 0 1 BICC1 chr10:60556100 3'AG 60556100 Downstream 81bp
chr19 10184034 10184034 1 + T C rs113376581 10184032 + 10184012 10184052 41 TCGTCTCCCATGCCACTTGCCATGACTCCCTGGGGTTGCAA TCGTCTCCCATGCCACTTGCCACGACTCCCTGGGGTTGCAA < 41bp 0.433307338083663 0.705243363288631 0.09552708 0.06428763 prediction 0.410486726577261 Functional Gain - C3P1 ENSG00000167798 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:10184032 chr19:10184034 . . 0 23 hm5C_associated_SNPs_127109 0 0 0 0 2 C3P1 chr19:10183976 3'AG 10183976 Downstream 59bp
chr19 10184034 10184034 1 + T C rs113376581 10184032 + 10184012 10184052 41 TCGTCTCCCATGCCACTTGCCATGACTCCCTGGGGTTGCAA TCGTCTCCCATGCCACTTGCCACGACTCCCTGGGGTTGCAA < 41bp 0.433307338083663 0.705243363288631 0.09552708 0.06428763 prediction 0.410486726577261 Functional Gain - C3P1 ENSG00000167798 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:10184032 chr19:10184034 . . 0 23 hm5C_associated_SNPs_127109 0 0 0 0 2 C3P1 chr19:10184111 5'GT 10184111 Upstream 78bp
chr1 154295511 154295511 1 + C A COAD 154295510 + 154295490 154295530 41 ATGTGCATCGTTGGACGCCTCCCCTGGGTCAAGCTCCCCAT ATGTGCATCGTTGGACGCCTCACCTGGGTCAAGCTCCCCAT < 41bp 0.433612841563089 0.705240744237799 0.044616938 0.0967074 prediction 0.410481488475597 Functional Gain - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154295510 chr1:154295511 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_127110 0 0 0 0 2 AQP10 chr1:154295458 3'AG 154295458 Downstream 54bp
chr1 154295511 154295511 1 + C A COAD 154295510 + 154295490 154295530 41 ATGTGCATCGTTGGACGCCTCCCCTGGGTCAAGCTCCCCAT ATGTGCATCGTTGGACGCCTCACCTGGGTCAAGCTCCCCAT < 41bp 0.433612841563089 0.705240744237799 0.044616938 0.0967074 prediction 0.410481488475597 Functional Gain - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154295510 chr1:154295511 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_127110 0 0 0 0 2 AQP10 chr1:154295595 5'GT 154295595 Upstream 85bp
chr6 19838359 19838359 1 + A G LUSC 19838356 + 19838336 19838376 41 GCCACCACCGCCCGCGCCGCCACACCACCCGGCCGGGACCT GCCACCACCGCCCGCGCCGCCACGCCACCCGGCCGGGACCT < 41bp 0.606174541272867 0.811412024329962 0.23988858 0.2962685 prediction 0.410474966114192 Functional Gain - ID4 ENSG00000172201 CDS Human protein_coding chr6:19838356 chr6:19838359 nonsynonymous SNV 0.943 1 24 hm5C_associated_SNPs_127111 0 0 0 0 1 ID4 chr6:19838426 5'GT 19838426 Upstream 68bp
chr2 242139598 242139598 1 + C G OV 242139597 + 242139577 242139617 41 AGGTTGTGCCAGACGTACCCCCCGAGTACTACTCCTGCCGG AGGTTGTGCCAGACGTACCCCGCGAGTACTACTCCTGCCGG < 41bp 0.695796719449334 0.901022961861219 0.3402136 0.88899225 prediction 0.410452484823769 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242139597 chr2:242139598 nonsynonymous SNV 0.471 0 22 hm5C_associated_SNPs_127115 0 0 0 0 2 ANO7 chr2:242139504 3'AG 242139504 Downstream 95bp
chr2 242139598 242139598 1 + C G OV 242139597 + 242139577 242139617 41 AGGTTGTGCCAGACGTACCCCCCGAGTACTACTCCTGCCGG AGGTTGTGCCAGACGTACCCCGCGAGTACTACTCCTGCCGG < 41bp 0.695796719449334 0.901022961861219 0.3402136 0.88899225 prediction 0.410452484823769 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242139597 chr2:242139598 nonsynonymous SNV 0.471 0 22 hm5C_associated_SNPs_127115 0 0 0 0 2 ANO7 chr2:242139640 5'GT 242139640 Upstream 43bp
chr19 36159436 36159436 1 + A G LUSC 36159433 + 36159413 36159453 41 GTATACCCACTGATGGGAGTCTCAGGCAAGGATGACGTCTT GTATACCCACTGATGGGAGTCTCGGGCAAGGATGACGTCTT < 41bp 0.597649456953124 0.802864689756091 0.7450651 0.8129376 prediction 0.410430465605934 Functional Gain - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36159433 chr19:36159436 synonymous SNV . 0 24 hm5C_associated_SNPs_127117 0 0 0 0 1 UPK1A chr19:36159356 3'AG 36159356 Downstream 81bp
chr5 180338566 180338566 1 + C A rs143894862 180338562 + 180338542 180338582 41 GCCGGGAGCATATCCTGTTCCATGCGGCATGCTCATCTGAG GCCGGGAGCATATCCTGTTCCATGAGGCATGCTCATCTGAG < 41bp 0.297608983574629 0.705214519048923 0.18391106 0.3946105 prediction 0.410429038097845 Functional Gain - BTNL8 ENSG00000113303 CDS Human protein_coding chr5:180338562 chr5:180338566 synonymous SNV . 0 25 hm5C_associated_SNPs_127118 0 0 0 0 1 BTNL8 chr5:180338614 5'GT 180338614 Upstream 49bp
chr15 85432036 85432036 1 + C A rs141245994 85432035 + 85432015 85432055 41 CTCCCTAGGAGTGACTTGAGCCCCGCAGAGATCAGGAGCAG CTCCCTAGGAGTGACTTGAGCACCGCAGAGATCAGGAGCAG < 41bp 0.450125361246384 0.705209147246725 0.09278539 0.12007862 prediction 0.41041829449345 Functional Gain - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85432035 chr15:85432036 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_127122 0 0 1 0 2 SLC28A1 chr15:85432003 3'AG 85432003 Downstream 34bp
chr15 85432036 85432036 1 + C A rs141245994 85432035 + 85432015 85432055 41 CTCCCTAGGAGTGACTTGAGCCCCGCAGAGATCAGGAGCAG CTCCCTAGGAGTGACTTGAGCACCGCAGAGATCAGGAGCAG < 41bp 0.450125361246384 0.705209147246725 0.09278539 0.12007862 prediction 0.41041829449345 Functional Gain - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85432035 chr15:85432036 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_127122 0 0 1 0 2 SLC28A1 chr15:85432091 5'GT 85432091 Upstream 56bp
chr17 34431961 34431961 1 + T C rs1719146 34431958 + 34431938 34431978 41 ACCGCCTGCTGCTTTTCTTACACTGCGAGGAAGCTTCCTCG ACCGCCTGCTGCTTTTCTTACACCGCGAGGAAGCTTCCTCG < 41bp 0.533642652151158 0.738844886829344 0.04818043 0.070917755 prediction 0.410404469356372 Functional Gain - CCL4 ENSG00000129277 CDS Human other chr17:34431958 chr17:34431961 synonymous SNV . 0 24 hm5C_associated_SNPs_127123 0 0 0 0 2 CCL4 chr17:34431921 3'AG 34431921 Downstream 41bp
chr17 34431961 34431961 1 + T C rs1719146 34431958 + 34431938 34431978 41 ACCGCCTGCTGCTTTTCTTACACTGCGAGGAAGCTTCCTCG ACCGCCTGCTGCTTTTCTTACACCGCGAGGAAGCTTCCTCG < 41bp 0.533642652151158 0.738844886829344 0.04818043 0.070917755 prediction 0.410404469356372 Functional Gain - CCL4 ENSG00000129277 CDS Human other chr17:34431958 chr17:34431961 synonymous SNV . 0 24 hm5C_associated_SNPs_127123 0 0 0 0 2 CCL4 chr17:34432035 5'GT 34432035 Upstream 75bp
chr17 7290392 7290392 1 + A G UCEC 7290389 + 7290369 7290409 41 AGCCTCGGCAGTGACGCTGGCAGATGCGGGGGGCTTGCCAG AGCCTCGGCAGTGACGCTGGCAGGTGCGGGGGGCTTGCCAG < 41bp 0.626819622189116 0.832019617843425 0.9395225 0.9341674 prediction 0.410399991308618 Functional Gain - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7290389 chr17:7290392 nonsynonymous SNV 0.105 2 24 hm5C_associated_SNPs_127124 0 0 0 0 3 TNK1 chr17:7290294 3'AG 7290294 Downstream 99bp
chr17 7290392 7290392 1 + A G UCEC 7290389 + 7290369 7290409 41 AGCCTCGGCAGTGACGCTGGCAGATGCGGGGGGCTTGCCAG AGCCTCGGCAGTGACGCTGGCAGGTGCGGGGGGCTTGCCAG < 41bp 0.626819622189116 0.832019617843425 0.9395225 0.9341674 prediction 0.410399991308618 Functional Gain - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7290389 chr17:7290392 nonsynonymous SNV 0.105 2 24 hm5C_associated_SNPs_127124 0 0 0 0 3 TNK1 chr17:7290309 3'AG 7290309 Downstream 84bp
chr17 7290392 7290392 1 + A G UCEC 7290389 + 7290369 7290409 41 AGCCTCGGCAGTGACGCTGGCAGATGCGGGGGGCTTGCCAG AGCCTCGGCAGTGACGCTGGCAGGTGCGGGGGGCTTGCCAG < 41bp 0.626819622189116 0.832019617843425 0.9395225 0.9341674 prediction 0.410399991308618 Functional Gain - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7290389 chr17:7290392 nonsynonymous SNV 0.105 2 24 hm5C_associated_SNPs_127124 0 0 0 0 3 TNK1 chr17:7290473 5'GT 7290473 Upstream 82bp
chr14 63747804 63747804 1 + A G UCEC 63747801 + 63747781 63747821 41 TGTCCAGGAGGAATGGGTCCCCGAGCTCAAGGACTGCATGC TGTCCAGGAGGAATGGGTCCCCGGGCTCAAGGACTGCATGC < 41bp 0.4598189596393 0.705192605890181 0.22399056 0.8996355 prediction 0.410385211780361 Functional Gain - RHOJ ENSG00000126785 CDS Human protein_coding chr14:63747801 chr14:63747804 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_127127 0 0 0 0 1 RHOJ chr14:63747853 5'GT 63747853 Upstream 50bp
chr6 49437927 49437927 1 + A G UCEC 49437924 + 49437904 49437944 41 AAATGCTTCCAAGAAAAACGCTCAACAGTTAAAAAGAAATC AAATGCTTCCAAGAAAAACGCTCGACAGTTAAAAAGAAATC < 41bp 0.555759771414095 0.760951222626901 0.025112718 0.067970276 prediction 0.410382902425611 Functional Gain - CENPQ ENSG00000031691 CDS Human protein_coding chr6:49437924 chr6:49437927 nonsynonymous SNV 0.018 1 24 hm5C_associated_SNPs_127128 0 0 1 0 2 CENPQ chr6:49437872 3'AG 49437872 Downstream 56bp
chr6 49437927 49437927 1 + A G UCEC 49437924 + 49437904 49437944 41 AAATGCTTCCAAGAAAAACGCTCAACAGTTAAAAAGAAATC AAATGCTTCCAAGAAAAACGCTCGACAGTTAAAAAGAAATC < 41bp 0.555759771414095 0.760951222626901 0.025112718 0.067970276 prediction 0.410382902425611 Functional Gain - CENPQ ENSG00000031691 CDS Human protein_coding chr6:49437924 chr6:49437927 nonsynonymous SNV 0.018 1 24 hm5C_associated_SNPs_127128 0 0 1 0 2 CENPQ chr6:49437991 5'GT 49437991 Upstream 65bp
chr13 113965104 113965104 1 + C A BRCA 113965103 + 113965083 113965123 41 TGTGTTAGTGGCACCCAGGTCCACATGAACAACGTGACCGT TGTGTTAGTGGCACCCAGGTCAACATGAACAACGTGACCGT < 41bp 0.444112085448474 0.705173575993617 0.09012607 0.09608969 prediction 0.410347151987235 Functional Gain - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113965103 chr13:113965104 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_127131 0 0 1 0 2 LAMP1 chr13:113965024 3'AG 113965024 Downstream 81bp
chr13 113965104 113965104 1 + C A BRCA 113965103 + 113965083 113965123 41 TGTGTTAGTGGCACCCAGGTCCACATGAACAACGTGACCGT TGTGTTAGTGGCACCCAGGTCAACATGAACAACGTGACCGT < 41bp 0.444112085448474 0.705173575993617 0.09012607 0.09608969 prediction 0.410347151987235 Functional Gain - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113965103 chr13:113965104 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_127131 0 0 1 0 2 LAMP1 chr13:113965182 5'GT 113965182 Upstream 79bp
chr7 73472000 73472000 1 + A G rs34945509 73471997 + 73471977 73472017 41 GACCCCAGCAGCTGCAGCTGCTAAAGCAGCCGCCAAAGCCG GACCCCAGCAGCTGCAGCTGCTAGAGCAGCCGCCAAAGCCG < 41bp 0.582466343034643 0.787634625751391 0.4728876 0.55035645 prediction 0.410336565433495 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73471997 chr7:73472000 nonsynonymous SNV 0.987 0 24 hm5C_associated_SNPs_127132 1 0 0 0 2 ELN chr7:73471970 3'AG 73471970 Downstream 31bp
chr7 73472000 73472000 1 + A G rs34945509 73471997 + 73471977 73472017 41 GACCCCAGCAGCTGCAGCTGCTAAAGCAGCCGCCAAAGCCG GACCCCAGCAGCTGCAGCTGCTAGAGCAGCCGCCAAAGCCG < 41bp 0.582466343034643 0.787634625751391 0.4728876 0.55035645 prediction 0.410336565433495 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73471997 chr7:73472000 nonsynonymous SNV 0.987 0 24 hm5C_associated_SNPs_127132 1 0 0 0 2 ELN chr7:73472026 5'GT 73472026 Upstream 27bp
chr12 80660309 80660309 1 + C A LIHC 80660308 + 80660288 80660328 41 CCTGCATTTCTCTCTCTTCCCCGGAGCAGTGCAGTGATGAC CCTGCATTTCTCTCTCTTCCCAGGAGCAGTGCAGTGATGAC < 41bp 0.622478449936877 0.827643454599971 0.896789 0.91495836 prediction 0.410330009326187 Functional Gain - OTOGL ENSG00000165899 CDS Human protein_coding chr12:80660308 chr12:80660309 nonsynonymous SNV 0.005 1 22 hm5C_associated_SNPs_127133 0 0 0 0 2 OTOGL chr12:80660231 3'AG 80660231 Downstream 79bp
chr12 80660309 80660309 1 + C A LIHC 80660308 + 80660288 80660328 41 CCTGCATTTCTCTCTCTTCCCCGGAGCAGTGCAGTGATGAC CCTGCATTTCTCTCTCTTCCCAGGAGCAGTGCAGTGATGAC < 41bp 0.622478449936877 0.827643454599971 0.896789 0.91495836 prediction 0.410330009326187 Functional Gain - OTOGL ENSG00000165899 CDS Human protein_coding chr12:80660308 chr12:80660309 nonsynonymous SNV 0.005 1 22 hm5C_associated_SNPs_127133 0 0 0 0 2 OTOGL chr12:80660396 5'GT 80660396 Upstream 88bp
chr17 9586165 9586165 1 + C T rs12453943 9586164 + 9586144 9586184 41 TCCACTGGGTCTGTCGGCCTCCCCACGCCTGGCAGCCCGTG TCCACTGGGTCTGTCGGCCTCTCCACGCCTGGCAGCCCGTG < 41bp 0.420185262773147 0.705163069693572 0.052786738 0.9282194 prediction 0.410326139387144 Functional Gain - USP43 ENSG00000154914 CDS Human protein_coding chr17:9586164 chr17:9586165 synonymous SNV . 0 22 hm5C_associated_SNPs_127134 0 0 0 0 1 USP43 chr17:9586140 3'AG 9586140 Downstream 26bp
chr12 122481906 122481906 1 + A G UCEC 122481903 + 122481883 122481923 41 GGCTGTGCCCAGCGACGGCACCGAGGCCAAGGTGGATGAGG GGCTGTGCCCAGCGACGGCACCGGGGCCAAGGTGGATGAGG < 41bp 0.44115893039317 0.705161108301057 0.18228287 0.70654297 prediction 0.410322216602113 Functional Gain - BCL7A ENSG00000110987 CDS Human protein_coding chr12:122481903 chr12:122481906 nonsynonymous SNV 0.393 1 24 hm5C_associated_SNPs_127136 0 0 1 0 1 BCL7A chr12:122481959 5'GT 122481959 Upstream 54bp
chr16 76486617 76486617 1 + T A HNSC 76486615 + 76486595 76486635 41 TCTTTCTGAGTGATGGAAAACTTAAGTCGAATCTCTACCAG TCTTTCTGAGTGATGGAAAACTAAAGTCGAATCTCTACCAG < 41bp 0.516974865282169 0.722135166940052 0.3369793 0.29713696 prediction 0.410320603315766 Functional Gain - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76486615 chr16:76486617 synonymous SNV . 0 23 hm5C_associated_SNPs_127139 0 0 0 0 1 CNTNAP4 chr16:76486666 5'GT 76486666 Upstream 50bp
chrX 153005685 153005685 1 + C T STAD 153005684 + 153005664 153005704 41 CCCAGCGCATGTTCTACATCCCGCAGAGGTAAGGAAGCCCG CCCAGCGCATGTTCTACATCCTGCAGAGGTAAGGAAGCCCG < 41bp 0.632764173745134 0.837919002524298 0.15065193 0.2052572 prediction 0.410309657558329 Functional Gain - ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153005684 chrX:153005685 nonsynonymous SNV 0.986 3 22 hm5C_associated_SNPs_127141 0 0 0 0 1 ABCD1 chrX:153005691 5'GT 153005691 Upstream 7bp
chr12 75875634 75875634 1 + C T SKCM 75875633 + 75875613 75875653 41 GACTTGGGACCCAGCACTAGCCCAAATTGCAAAAGCATGGG GACTTGGGACCCAGCACTAGCTCAAATTGCAAAAGCATGGG < 41bp 0.447904723152929 0.705148378047796 0.124418646 0.12827903 prediction 0.410296756095593 Functional Gain - GLIPR1 ENSG00000139278 CDS Human protein_coding chr12:75875633 chr12:75875634 synonymous SNV . 0 22 hm5C_associated_SNPs_127143 0 0 0 0 1 GLIPR1 chr12:75875614 3'AG 75875614 Downstream 21bp
chr3 185316806 185316806 1 + A G LGG 185316803 + 185316783 185316823 41 CTGGATCCTGGAACAACATGCTGAAACTGGGTGAGGTGGTC CTGGATCCTGGAACAACATGCTGGAACTGGGTGAGGTGGTC < 41bp 0.474415398850133 0.705140481249261 0.31240106 0.4002705 prediction 0.410280962498522 Functional Gain - SENP2 ENSG00000163904 CDS Human protein_coding chr3:185316803 chr3:185316806 stoploss 1.000 0 24 hm5C_associated_SNPs_127145 0 0 1 0 2 SENP2 chr3:185316746 3'AG 185316746 Downstream 61bp
chr3 185316806 185316806 1 + A G LGG 185316803 + 185316783 185316823 41 CTGGATCCTGGAACAACATGCTGAAACTGGGTGAGGTGGTC CTGGATCCTGGAACAACATGCTGGAACTGGGTGAGGTGGTC < 41bp 0.474415398850133 0.705140481249261 0.31240106 0.4002705 prediction 0.410280962498522 Functional Gain - SENP2 ENSG00000163904 CDS Human protein_coding chr3:185316803 chr3:185316806 stoploss 1.000 0 24 hm5C_associated_SNPs_127145 0 0 1 0 2 SENP2 chr3:185316812 5'GT 185316812 Upstream 7bp
chr19 4157081 4157081 1 + C G SKCM 4157080 + 4157060 4157100 41 CAGCTCCCCACTCTGGTCCCCCGAAGGCAGTGATAGTGGCA CAGCTCCCCACTCTGGTCCCCGGAAGGCAGTGATAGTGGCA < 41bp 0.369048949995112 0.705138578027252 0.3565119 0.791043 prediction 0.410277156054505 Functional Gain - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4157080 chr19:4157081 synonymous SNV . 0 22 hm5C_associated_SNPs_127146 0 0 0 0 2 CREB3L3 chr19:4156992 3'AG 4156992 Downstream 90bp
chr19 4157081 4157081 1 + C G SKCM 4157080 + 4157060 4157100 41 CAGCTCCCCACTCTGGTCCCCCGAAGGCAGTGATAGTGGCA CAGCTCCCCACTCTGGTCCCCGGAAGGCAGTGATAGTGGCA < 41bp 0.369048949995112 0.705138578027252 0.3565119 0.791043 prediction 0.410277156054505 Functional Gain - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4157080 chr19:4157081 synonymous SNV . 0 22 hm5C_associated_SNPs_127146 0 0 0 0 2 CREB3L3 chr19:4156995 3'AG 4156995 Downstream 87bp
chr19 39962086 39962086 1 + A G LUSC 39962083 + 39962063 39962103 41 CGCTTTGCTGTGGCCTTGGACTCAGAGCAGAACAACATCCA CGCTTTGCTGTGGCCTTGGACTCGGAGCAGAACAACATCCA < 41bp 0.473890119300695 0.705129835789414 0.06578413 0.20606622 prediction 0.410259671578828 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39962083 chr19:39962086 synonymous SNV . 0 24 hm5C_associated_SNPs_127148 0 0 1 0 2 SUPT5H chr19:39961997 3'AG 39961997 Downstream 90bp
chr19 39962086 39962086 1 + A G LUSC 39962083 + 39962063 39962103 41 CGCTTTGCTGTGGCCTTGGACTCAGAGCAGAACAACATCCA CGCTTTGCTGTGGCCTTGGACTCGGAGCAGAACAACATCCA < 41bp 0.473890119300695 0.705129835789414 0.06578413 0.20606622 prediction 0.410259671578828 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39962083 chr19:39962086 synonymous SNV . 0 24 hm5C_associated_SNPs_127148 0 0 1 0 2 SUPT5H chr19:39962143 5'GT 39962143 Upstream 58bp
chr21 35237482 35237482 1 + C G SKCM 35237481 + 35237461 35237501 41 GAGAGTCCGCAAGAAGATGTCCGGGGAGAAGATGCCTGTGA GAGAGTCCGCAAGAAGATGTCGGGGGAGAAGATGCCTGTGA < 41bp 0.651974316902397 0.857101931619627 0.89529204 0.93662566 prediction 0.41025522943446 Functional Gain - ITSN1 ENSG00000205726 CDS Human protein_coding chr21:35237481 chr21:35237482 synonymous SNV . 0 22 hm5C_associated_SNPs_127150 0 0 0 0 1 ITSN1 chr21:35237455 3'AG 35237455 Downstream 28bp
chr2 47249054 47249054 1 + C T SKCM 47249053 + 47249033 47249073 41 GATCAGCCTCGGAGAGGAAGCCGGGGAGTTCCTCCCCAAGG GATCAGCCTCGGAGAGGAAGCTGGGGAGTTCCTCCCCAAGG < 41bp 0.602376699533183 0.807498431467868 0.9411663 0.9234251 prediction 0.410243463869369 Functional Gain - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47249053 chr2:47249054 synonymous SNV . 0 22 hm5C_associated_SNPs_127152 0 0 1 0 2 TTC7A chr2:47249001 3'AG 47249001 Downstream 54bp
chr2 47249054 47249054 1 + C T SKCM 47249053 + 47249033 47249073 41 GATCAGCCTCGGAGAGGAAGCCGGGGAGTTCCTCCCCAAGG GATCAGCCTCGGAGAGGAAGCTGGGGAGTTCCTCCCCAAGG < 41bp 0.602376699533183 0.807498431467868 0.9411663 0.9234251 prediction 0.410243463869369 Functional Gain - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47249053 chr2:47249054 synonymous SNV . 0 22 hm5C_associated_SNPs_127152 0 0 1 0 2 TTC7A chr2:47249118 5'GT 47249118 Upstream 65bp
chr5 68471312 68471312 1 + T A UCEC 68471308 + 68471288 68471328 41 TGGTGCACTTTCCTCCTTCTCAAATTGCAGCAGGAGCTTTT TGGTGCACTTTCCTCCTTCTCAAAATGCAGCAGGAGCTTTT < 41bp 0.369752614868656 0.705117462921757 0.19502822 0.29297695 prediction 0.410234925843513 Functional Gain - CCNB1 ENSG00000134057 CDS Human protein_coding chr5:68471308 chr5:68471312 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_127154 0 0 1 0 2 CCNB1 chr5:68471224 3'AG 68471224 Downstream 89bp
chr5 68471312 68471312 1 + T A UCEC 68471308 + 68471288 68471328 41 TGGTGCACTTTCCTCCTTCTCAAATTGCAGCAGGAGCTTTT TGGTGCACTTTCCTCCTTCTCAAAATGCAGCAGGAGCTTTT < 41bp 0.369752614868656 0.705117462921757 0.19502822 0.29297695 prediction 0.410234925843513 Functional Gain - CCNB1 ENSG00000134057 CDS Human protein_coding chr5:68471308 chr5:68471312 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_127154 0 0 1 0 2 CCNB1 chr5:68471364 5'GT 68471364 Upstream 53bp
chr1 40751637 40751637 1 + T C UCEC 40751634 + 40751614 40751654 41 TAAAAATGAGGAGGTACTCGCTGTACTAGGCCATGAACTGG TAAAAATGAGGAGGTACTCGCTGCACTAGGCCATGAACTGG < 41bp 0.577537610203467 0.782646949652562 0.63657355 0.5701188 prediction 0.410218678898192 Functional Gain - ZMPSTE24 ENSG00000084073 CDS Human protein_coding chr1:40751634 chr1:40751637 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_127157 0 0 1 0 2 ZMPSTE24 chr1:40751597 3'AG 40751597 Downstream 41bp
chr1 40751637 40751637 1 + T C UCEC 40751634 + 40751614 40751654 41 TAAAAATGAGGAGGTACTCGCTGTACTAGGCCATGAACTGG TAAAAATGAGGAGGTACTCGCTGCACTAGGCCATGAACTGG < 41bp 0.577537610203467 0.782646949652562 0.63657355 0.5701188 prediction 0.410218678898192 Functional Gain - ZMPSTE24 ENSG00000084073 CDS Human protein_coding chr1:40751634 chr1:40751637 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_127157 0 0 1 0 2 ZMPSTE24 chr1:40751701 5'GT 40751701 Upstream 65bp
chr12 129178486 129178486 1 + T C UCEC 129178484 + 129178464 129178504 41 AGCGCCCCCCTGTGTGTCACCGTGTGGGTGCCCCGGCTGCC AGCGCCCCCCTGTGTGTCACCGCGTGGGTGCCCCGGCTGCC < 41bp 0.431876455001555 0.705107876456779 0.47669384 0.55183303 prediction 0.410215752913558 Functional Gain - TMEM132C ENSG00000181234 CDS Human protein_coding chr12:129178484 chr12:129178486 nonsynonymous SNV 0.989 3 23 hm5C_associated_SNPs_127159 0 0 0 0 1 TMEM132C chr12:129178579 5'GT 129178579 Upstream 94bp
chr19 42817572 42817572 1 + C T rs185966365 42817571 + 42817551 42817591 41 CGCTGCGCCGCCTGCTGCCGCCGCTGCTGCTCCTGCTGCTG CGCTGCGCCGCCTGCTGCCGCTGCTGCTGCTCCTGCTGCTG < 41bp 0.522563843385206 0.727659741756461 0.2972989 0.37667882 prediction 0.410191796742509 Functional Gain - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42817571 chr19:42817572 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_127162 0 0 0 0 1 TMEM145 chr19:42817648 5'GT 42817648 Upstream 77bp
chr2 206640998 206640998 1 + C T KIRC 206640997 + 206640977 206641017 41 CCTCCTGCCAGGGACCGAGCCCACAGTGGACACGGTGCCCA CCTCCTGCCAGGGACCGAGCCTACAGTGGACACGGTGCCCA < 41bp 0.456354477660653 0.705093104551018 0.82511294 0.94399965 prediction 0.410186209102035 Functional Gain - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206640997 chr2:206640998 synonymous SNV . 0 22 hm5C_associated_SNPs_127163 0 0 0 0 1 NRP2 chr2:206640970 3'AG 206640970 Downstream 29bp
chr8 67417683 67417683 1 + C T SKCM 67417682 + 67417662 67417702 41 ACCGCGGAGACCGCAGGGACCCTGGCGACCGCCGCAGGTTT ACCGCGGAGACCGCAGGGACCTTGGCGACCGCCGCAGGTTT < 41bp 0.584366066478375 0.78945491312316 0.48294577 0.36209935 prediction 0.410177693289568 Functional Gain - C8orf46 ENSG00000169085 CDS Human protein_coding chr8:67417682 chr8:67417683 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_127166 0 0 0 0 2 C8orf46 chr8:67417610 3'AG 67417610 Downstream 74bp
chr8 67417683 67417683 1 + C T SKCM 67417682 + 67417662 67417702 41 ACCGCGGAGACCGCAGGGACCCTGGCGACCGCCGCAGGTTT ACCGCGGAGACCGCAGGGACCTTGGCGACCGCCGCAGGTTT < 41bp 0.584366066478375 0.78945491312316 0.48294577 0.36209935 prediction 0.410177693289568 Functional Gain - C8orf46 ENSG00000169085 CDS Human protein_coding chr8:67417682 chr8:67417683 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_127166 0 0 0 0 2 C8orf46 chr8:67417763 5'GT 67417763 Upstream 81bp
chr20 61869289 61869289 1 + T C UCEC 61869286 + 61869266 61869306 41 AAGGTGAGGTGCTTCTTCTGCTATGGGGGCCTGCAGAGCTG AAGGTGAGGTGCTTCTTCTGCTACGGGGGCCTGCAGAGCTG < 41bp 0.51858500437805 0.723661550582373 0.26827767 0.25075606 prediction 0.410153092408645 Functional Gain - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61869286 chr20:61869289 synonymous SNV . 0 24 hm5C_associated_SNPs_127172 0 0 0 0 2 BIRC7 chr20:61869255 3'AG 61869255 Downstream 35bp
chr20 61869289 61869289 1 + T C UCEC 61869286 + 61869266 61869306 41 AAGGTGAGGTGCTTCTTCTGCTATGGGGGCCTGCAGAGCTG AAGGTGAGGTGCTTCTTCTGCTACGGGGGCCTGCAGAGCTG < 41bp 0.51858500437805 0.723661550582373 0.26827767 0.25075606 prediction 0.410153092408645 Functional Gain - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61869286 chr20:61869289 synonymous SNV . 0 24 hm5C_associated_SNPs_127172 0 0 0 0 2 BIRC7 chr20:61869354 5'GT 61869354 Upstream 66bp
chr5 172359522 172359522 1 + T C HNSC 172359519 + 172359499 172359539 41 GCAAGCAGCGGTACTCCTACCAGTACACGGTGGCCAACAAG GCAAGCAGCGGTACTCCTACCAGCACACGGTGGCCAACAAG < 41bp 0.504359145977058 0.709434211354827 0.6207284 0.5363233 prediction 0.410150130755539 Functional Gain - ERGIC1 ENSG00000113719 CDS Human protein_coding chr5:172359519 chr5:172359522 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_127173 0 0 1 0 2 ERGIC1 chr5:172359439 3'AG 172359439 Downstream 84bp
chr5 172359522 172359522 1 + T C HNSC 172359519 + 172359499 172359539 41 GCAAGCAGCGGTACTCCTACCAGTACACGGTGGCCAACAAG GCAAGCAGCGGTACTCCTACCAGCACACGGTGGCCAACAAG < 41bp 0.504359145977058 0.709434211354827 0.6207284 0.5363233 prediction 0.410150130755539 Functional Gain - ERGIC1 ENSG00000113719 CDS Human protein_coding chr5:172359519 chr5:172359522 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_127173 0 0 1 0 2 ERGIC1 chr5:172359539 5'GT 172359539 Upstream 18bp
chr7 27228286 27228286 1 + C A rs17472294 27228285 + 27228265 27228305 41 CGACTGAGGCTAAAGCCGCCCCGGAAGGCCAAGTCCGAGTT CGACTGAGGCTAAAGCCGCCCAGGAAGGCCAAGTCCGAGTT < 41bp 0.637160324160161 0.8422319522086 0.44974163 0.66140866 prediction 0.410143256096877 Functional Gain - HOXA11-AS ENSG00000240990 ncRNA_exonic Human antisense chr7:27228285 chr7:27228286 . . 0 22 hm5C_associated_SNPs_127174 0 0 0 0 1 HOXA11-AS chr7:27228220 3'AG 27228220 Downstream 67bp
chr17 41165209 41165209 1 + A G BLCA 41165206 + 41165186 41165226 41 TCTGATCACCTTTGATGACCCCAAAGGTAAGCTCATGGGGA TCTGATCACCTTTGATGACCCCAGAGGTAAGCTCATGGGGA < 41bp 0.45044919009158 0.705071568205843 0.093006134 0.41253108 prediction 0.410143136411687 Functional Gain - IFI35 ENSG00000068079 CDS Human protein_coding chr17:41165206 chr17:41165209 nonsynonymous SNV 0.986 0 24 hm5C_associated_SNPs_127175 0 0 1 0 1 IFI35 chr17:41165211 5'GT 41165211 Upstream 3bp
chr15 91184414 91184414 1 + C T rs200743244 91184413 + 91184393 91184433 41 ATTCCAACTGCGGGAGTCTCCCGAACACCATCCTGCCAGGT ATTCCAACTGCGGGAGTCTCCTGAACACCATCCTGCCAGGT < 41bp 0.441517982956764 0.705067230009607 0.32806957 0.22068712 prediction 0.410134460019214 Functional Gain - CRTC3 ENSG00000140577 CDS Human protein_coding chr15:91184413 chr15:91184414 nonsynonymous SNV 0.006 4 22 hm5C_associated_SNPs_127177 0 0 1 0 2 CRTC3 chr15:91184329 3'AG 91184329 Downstream 86bp
chr15 91184414 91184414 1 + C T rs200743244 91184413 + 91184393 91184433 41 ATTCCAACTGCGGGAGTCTCCCGAACACCATCCTGCCAGGT ATTCCAACTGCGGGAGTCTCCTGAACACCATCCTGCCAGGT < 41bp 0.441517982956764 0.705067230009607 0.32806957 0.22068712 prediction 0.410134460019214 Functional Gain - CRTC3 ENSG00000140577 CDS Human protein_coding chr15:91184413 chr15:91184414 nonsynonymous SNV 0.006 4 22 hm5C_associated_SNPs_127177 0 0 1 0 2 CRTC3 chr15:91184431 5'GT 91184431 Upstream 18bp
chr22 31583164 31583164 1 + C G GBM 31583160 + 31583140 31583180 41 CAGTGGGAGCAGCAATGGCGCTGGCGAGAGCGGAGGGCAGG CAGTGGGAGCAGCAATGGCGCTGGGGAGAGCGGAGGGCAGG < 41bp 0.671495390297359 0.876562583919117 0.39923033 0.4169876 prediction 0.410134387243517 Functional Gain - RNF185 ENSG00000138942 CDS Human protein_coding chr22:31583160 chr22:31583164 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_127178 0 0 1 0 1 RNF185 chr22:31583256 5'GT 31583256 Upstream 93bp
chr15 34517776 34517776 1 + C G LGG 34517772 + 34517752 34517792 41 GGGCAGTGGCCAGGGAGACTCGCTCTACCCAGTCGGTTACT GGGCAGTGGCCAGGGAGACTCGCTGTACCCAGTCGGTTACT < 41bp 0.662387140690974 0.867453616584904 0.71641695 0.325751 prediction 0.41013295178786 Functional Gain - EMC4 ENSG00000128463 CDS Human protein_coding chr15:34517772 chr15:34517776 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_127179 0 0 1 0 2 EMC4 chr15:34517737 3'AG 34517737 Downstream 40bp
chr15 34517776 34517776 1 + C G LGG 34517772 + 34517752 34517792 41 GGGCAGTGGCCAGGGAGACTCGCTCTACCCAGTCGGTTACT GGGCAGTGGCCAGGGAGACTCGCTGTACCCAGTCGGTTACT < 41bp 0.662387140690974 0.867453616584904 0.71641695 0.325751 prediction 0.41013295178786 Functional Gain - EMC4 ENSG00000128463 CDS Human protein_coding chr15:34517772 chr15:34517776 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_127179 0 0 1 0 2 EMC4 chr15:34517851 5'GT 34517851 Upstream 76bp
chr16 27765498 27765498 1 + C T COAD 27765497 + 27765477 27765517 41 CTCCAACCCATGTGCAGATCCCGGAGCTAGAGCTCCCATCC CTCCAACCCATGTGCAGATCCTGGAGCTAGAGCTCCCATCC < 41bp 0.611648569075632 0.816711946487491 0.909585 0.39733657 prediction 0.410126754823719 Functional Gain - KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27765497 chr16:27765498 nonsynonymous SNV 0.005 0 22 hm5C_associated_SNPs_127180 0 0 1 0 2 KIAA0556 chr16:27765494 3'AG 27765494 Downstream 5bp
chr16 27765498 27765498 1 + C T COAD 27765497 + 27765477 27765517 41 CTCCAACCCATGTGCAGATCCCGGAGCTAGAGCTCCCATCC CTCCAACCCATGTGCAGATCCTGGAGCTAGAGCTCCCATCC < 41bp 0.611648569075632 0.816711946487491 0.909585 0.39733657 prediction 0.410126754823719 Functional Gain - KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27765497 chr16:27765498 nonsynonymous SNV 0.005 0 22 hm5C_associated_SNPs_127180 0 0 1 0 2 KIAA0556 chr16:27765572 5'GT 27765572 Upstream 75bp
chr14 24647335 24647335 1 + T C COAD 24647333 + 24647313 24647353 41 CCCCACCTCCTCGCCGCCGCCGTCGTCGCCGGTTACTGTTC CCCCACCTCCTCGCCGCCGCCGCCGTCGCCGGTTACTGTTC < 41bp 0.41252323224814 0.705056772831944 0.15466768 0.300245 prediction 0.410113545663889 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24647333 chr14:24647335 synonymous SNV . 0 23 hm5C_associated_SNPs_127183 0 0 0 0 2 REC8 chr14:24647297 3'AG 24647297 Downstream 39bp
chr14 24647335 24647335 1 + T C COAD 24647333 + 24647313 24647353 41 CCCCACCTCCTCGCCGCCGCCGTCGTCGCCGGTTACTGTTC CCCCACCTCCTCGCCGCCGCCGCCGTCGCCGGTTACTGTTC < 41bp 0.41252323224814 0.705056772831944 0.15466768 0.300245 prediction 0.410113545663889 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24647333 chr14:24647335 synonymous SNV . 0 23 hm5C_associated_SNPs_127183 0 0 0 0 2 REC8 chr14:24647428 5'GT 24647428 Upstream 94bp
chr19 34887238 34887238 1 + C T HNSC 34887237 + 34887217 34887257 41 GTCCAATGGGAAATACATCACCAAATCTGGAACCCGTGTGG GTCCAATGGGAAATACATCACTAAATCTGGAACCCGTGTGG < 41bp 0.439304432319904 0.705055093453236 0.06483644 0.1844784 prediction 0.410110186906473 Functional Gain - GPI ENSG00000105220;ENSG00000266953 CDS Human protein_coding chr19:34887237 chr19:34887238 synonymous SNV . 0 22 hm5C_associated_SNPs_127184 0 0 1 0 2 GPI chr19:34887206 3'AG 34887206 Downstream 33bp
chr19 34887238 34887238 1 + C T HNSC 34887237 + 34887217 34887257 41 GTCCAATGGGAAATACATCACCAAATCTGGAACCCGTGTGG GTCCAATGGGAAATACATCACTAAATCTGGAACCCGTGTGG < 41bp 0.439304432319904 0.705055093453236 0.06483644 0.1844784 prediction 0.410110186906473 Functional Gain - GPI ENSG00000105220;ENSG00000266953 CDS Human other chr19:34887237 chr19:34887238 synonymous SNV . 0 22 hm5C_associated_SNPs_127184 0 0 1 0 2 GPI chr19:34887335 5'GT 34887335 Upstream 98bp
chr19 18305824 18305824 1 + C A rs2271881 18305823 + 18305803 18305843 41 GAACTTCCTCTTCGTGCCCCCCCAATTTCGAGTCACCTACA GAACTTCCTCTTCGTGCCCCCACAATTTCGAGTCACCTACA < 41bp 0.439593124864154 0.705047421236167 0.066526055 0.08037642 prediction 0.410094842472334 Functional Gain - MPV17L2 ENSG00000254858 CDS Human protein_coding chr19:18305823 chr19:18305824 synonymous SNV . 0 22 hm5C_associated_SNPs_127189 0 0 1 0 2 MPV17L2 chr19:18305768 3'AG 18305768 Downstream 57bp
chr19 18305824 18305824 1 + C A rs2271881 18305823 + 18305803 18305843 41 GAACTTCCTCTTCGTGCCCCCCCAATTTCGAGTCACCTACA GAACTTCCTCTTCGTGCCCCCACAATTTCGAGTCACCTACA < 41bp 0.439593124864154 0.705047421236167 0.066526055 0.08037642 prediction 0.410094842472334 Functional Gain - MPV17L2 ENSG00000254858 CDS Human protein_coding chr19:18305823 chr19:18305824 synonymous SNV . 0 22 hm5C_associated_SNPs_127189 0 0 1 0 2 MPV17L2 chr19:18305896 5'GT 18305896 Upstream 73bp
chr2 10267260 10267260 1 + C T UCEC 10267259 + 10267239 10267279 41 AGTGGAAGGCATTTTCTTTTCCGGTTCTTTTGCGTCGATAT AGTGGAAGGCATTTTCTTTTCTGGTTCTTTTGCGTCGATAT < 41bp 0.616729277754292 0.821771354889349 0.491332 0.28087497 prediction 0.410084154270113 Functional Gain - RRM2 ENSG00000171848 CDS Human protein_coding chr2:10267259 chr2:10267260 synonymous SNV . 0 22 hm5C_associated_SNPs_127194 0 0 1 0 2 RRM2 chr2:10267214 3'AG 10267214 Downstream 47bp
chr2 10267260 10267260 1 + C T UCEC 10267259 + 10267239 10267279 41 AGTGGAAGGCATTTTCTTTTCCGGTTCTTTTGCGTCGATAT AGTGGAAGGCATTTTCTTTTCTGGTTCTTTTGCGTCGATAT < 41bp 0.616729277754292 0.821771354889349 0.491332 0.28087497 prediction 0.410084154270113 Functional Gain - RRM2 ENSG00000171848 CDS Human protein_coding chr2:10267259 chr2:10267260 synonymous SNV . 0 22 hm5C_associated_SNPs_127194 0 0 1 0 2 RRM2 chr2:10267347 5'GT 10267347 Upstream 88bp
chr1 86047684 86047684 1 + T C STAD 86047681 + 86047661 86047701 41 GGGGAAAGTTTCCAGCCCAACTGTAAACATCAGTGCACATG GGGGAAAGTTTCCAGCCCAACTGCAAACATCAGTGCACATG < 41bp 0.555783615717735 0.760824865263559 0.14176461 0.2494916 prediction 0.410082499091647 Functional Gain - CYR61 ENSG00000142871 CDS Human protein_coding chr1:86047681 chr1:86047684 synonymous SNV . 0 24 hm5C_associated_SNPs_127195 0 0 1 0 1 CYR61 chr1:86047611 3'AG 86047611 Downstream 74bp
chr11 30255202 30255202 1 + C A LUAD 30255201 + 30255181 30255221 41 TATACGAAACAGTGAGAGTGCCCGGCTGTGCTCACCATGCA TATACGAAACAGTGAGAGTGCACGGCTGTGCTCACCATGCA < 41bp 0.62083612918946 0.82587449200382 0.049554646 0.21408665 prediction 0.41007672562872 Functional Gain - FSHB ENSG00000131808 CDS Human protein_coding chr11:30255201 chr11:30255202 nonsynonymous SNV 0.918 5 22 hm5C_associated_SNPs_127198 0 0 0 0 1 FSHB chr11:30255117 3'AG 30255117 Downstream 86bp
chr1 114515735 114515735 1 + C T SKCM 114515734 + 114515714 114515754 41 GGCGTTTGTGGCCCCTCTCTCCCAAGCCCCCTACACCTTCC GGCGTTTGTGGCCCCTCTCTCTCAAGCCCCCTACACCTTCC < 41bp 0.634541839638923 0.839577926289806 0.36171186 0.513664 prediction 0.410072173301766 Functional Gain - HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114515734 chr1:114515735 synonymous SNV . 0 22 hm5C_associated_SNPs_127200 0 0 1 0 1 HIPK1 chr1:114515646 3'AG 114515646 Downstream 90bp
chr17 30687743 30687743 1 + C A KIRP 30687742 + 30687722 30687762 41 ATATTCCTCCAATGGCACAGCCAGGACTGCCACCAGTACCA ATATTCCTCCAATGGCACAGCAAGGACTGCCACCAGTACCA < 41bp 0.44634821981322 0.705025833374175 0.11995268 0.17574564 prediction 0.410051666748349 Functional Gain - ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30687742 chr17:30687743 nonsynonymous SNV 0.990 1 22 hm5C_associated_SNPs_127203 0 0 1 0 1 ZNF207 chr17:30687784 5'GT 30687784 Upstream 42bp
chr17 46628481 46628481 1 + C T UCEC 46628480 + 46628460 46628500 41 CTCCCCCGCCGCCGCCGCCACCGCCCCCGCTGCCACCACTG CTCCCCCGCCGCCGCCGCCACTGCCCCCGCTGCCACCACTG < 41bp 0.521051568537538 0.726076512880217 0.36474404 0.37287074 prediction 0.410049888685357 Functional Gain - HOXB3 ENSG00000120093 CDS Human protein_coding chr17:46628480 chr17:46628481 nonsynonymous SNV 0.086 1 22 hm5C_associated_SNPs_127204 0 0 1 0 1 HOXB3 chr17:46628386 3'AG 46628386 Downstream 96bp
chr17 40717718 40717718 1 + C T COAD 40717717 + 40717697 40717737 41 GAGGGATGGCCTCAGTGAAGCCGCGGCTCAAAGCCGGCTGC GAGGGATGGCCTCAGTGAAGCTGCGGCTCAAAGCCGGCTGC < 41bp 0.616546223067518 0.821561161015122 0.57479346 0.3869228 prediction 0.410029875895209 Functional Gain - COASY ENSG00000068120 CDS Human protein_coding chr17:40717717 chr17:40717718 synonymous SNV . 0 22 hm5C_associated_SNPs_127209 0 0 1 0 1 COASY chr17:40717677 3'AG 40717677 Downstream 42bp
chr1 9781822 9781822 1 + C T UCEC 9781821 + 9781801 9781841 41 CCTCCCTTCACCTTCCAGCTCCGAGATGCACGTGCCGTCGG CCTCCCTTCACCTTCCAGCTCTGAGATGCACGTGCCGTCGG < 41bp 0.458603283944529 0.705011600778246 0.3858092 0.26294863 prediction 0.410023201556492 Functional Gain - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9781821 chr1:9781822 synonymous SNV . 0 22 hm5C_associated_SNPs_127212 0 0 1 0 2 PIK3CD chr1:9781819 3'AG 9781819 Downstream 4bp
chr1 9781822 9781822 1 + C T UCEC 9781821 + 9781801 9781841 41 CCTCCCTTCACCTTCCAGCTCCGAGATGCACGTGCCGTCGG CCTCCCTTCACCTTCCAGCTCTGAGATGCACGTGCCGTCGG < 41bp 0.458603283944529 0.705011600778246 0.3858092 0.26294863 prediction 0.410023201556492 Functional Gain - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9781821 chr1:9781822 synonymous SNV . 0 22 hm5C_associated_SNPs_127212 0 0 1 0 2 PIK3CD chr1:9781918 5'GT 9781918 Upstream 97bp
chr7 18687498 18687498 1 + C T PRAD 18687497 + 18687477 18687517 41 GGGCAGTATGGAGGCAGCATCCCGGCATCTTCCAGCCACCC GGGCAGTATGGAGGCAGCATCTCGGCATCTTCCAGCCACCC < 41bp 0.522970698325996 0.727980099291073 0.8753197 0.8343271 prediction 0.410018801930152 Functional Gain - HDAC9 ENSG00000048052 CDS Human protein_coding chr7:18687497 chr7:18687498 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_127213 0 0 0 0 1 HDAC9 chr7:18687408 3'AG 18687408 Downstream 91bp
chr18 51807123 51807123 1 + T C rs3218788 51807120 + 51807100 51807140 41 TGCGGGAAGCCATGTATAATCAGTTGGGGCTCACTGGCTGT TGCGGGAAGCCATGTATAATCAGCTGGGGCTCACTGGCTGT < 41bp 0.547261398070716 0.752266330299413 0.4619712 0.868618 prediction 0.410009864457393 Functional Gain - POLI ENSG00000101751 CDS Human protein_coding chr18:51807120 chr18:51807123 synonymous SNV . 0 24 hm5C_associated_SNPs_127214 0 0 1 0 1 POLI chr18:51807037 3'AG 51807037 Downstream 87bp
chr19 34291422 34291422 1 + C A UCEC 34291421 + 34291401 34291441 41 CACACACGGCAGCACCGGCACCGCGGTGAGCCTGCAGGGTG CACACACGGCAGCACCGGCACAGCGGTGAGCCTGCAGGGTG < 41bp 0.641376951083567 0.846380106276 0.5286937 0.7143091 prediction 0.410006310384865 Functional Gain - KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34291421 chr19:34291422 synonymous SNV . 0 22 hm5C_associated_SNPs_127216 0 0 0 0 2 KCTD15 chr19:34291333 3'AG 34291333 Downstream 90bp
chr19 34291422 34291422 1 + C A UCEC 34291421 + 34291401 34291441 41 CACACACGGCAGCACCGGCACCGCGGTGAGCCTGCAGGGTG CACACACGGCAGCACCGGCACAGCGGTGAGCCTGCAGGGTG < 41bp 0.641376951083567 0.846380106276 0.5286937 0.7143091 prediction 0.410006310384865 Functional Gain - KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34291421 chr19:34291422 synonymous SNV . 0 22 hm5C_associated_SNPs_127216 0 0 0 0 2 KCTD15 chr19:34291425 5'GT 34291425 Upstream 4bp
chr17 73749930 73749930 1 + C T HNSC 73749929 + 73749909 73749949 41 GGCTGCCCCCGGAGCTCATCCCGCGCCTGTCGGCCAGCAGC GGCTGCCCCCGGAGCTCATCCTGCGCCTGTCGGCCAGCAGC < 41bp 0.464510615938136 0.705001131708681 0.86905885 0.5628902 prediction 0.410002263417361 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73749929 chr17:73749930 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_127218 0 0 0 0 1 ITGB4 chr17:73749846 3'AG 73749846 Downstream 85bp
chr19 54483203 54483203 1 + C G rs145338051 54483199 + 54483179 54483219 41 GGGTGTGTGCGTGGCGGCCTCCCGCGTCTACAAGTCCAAGA GGGTGTGTGCGTGGCGGCCTCCCGGGTCTACAAGTCCAAGA < 41bp 0.407998557711033 0.704998470321434 0.105264425 0.5507014 prediction 0.409996940642868 Functional Gain - CACNG8 ENSG00000142408 CDS Human protein_coding chr19:54483199 chr19:54483203 synonymous SNV . 0 25 hm5C_associated_SNPs_127219 0 0 0 0 2 CACNG8 chr19:54483121 3'AG 54483121 Downstream 83bp
chr19 54483203 54483203 1 + C G rs145338051 54483199 + 54483179 54483219 41 GGGTGTGTGCGTGGCGGCCTCCCGCGTCTACAAGTCCAAGA GGGTGTGTGCGTGGCGGCCTCCCGGGTCTACAAGTCCAAGA < 41bp 0.407998557711033 0.704998470321434 0.105264425 0.5507014 prediction 0.409996940642868 Functional Gain - CACNG8 ENSG00000142408 CDS Human protein_coding chr19:54483199 chr19:54483203 synonymous SNV . 0 25 hm5C_associated_SNPs_127219 0 0 0 0 2 CACNG8 chr19:54483261 5'GT 54483261 Upstream 59bp
chr14 65511158 65511158 1 + C G HNSC 65511154 + 65511134 65511174 41 CTGCTCCACCGCGCACTGCACGCCCAAGGTGAGCCTGGGGA CTGCTCCACCGCGCACTGCACGCCGAAGGTGAGCCTGGGGA < 41bp 0.414347291187074 0.704983813169883 0.04569143 0.30753398 prediction 0.409967626339766 Functional Gain - CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65511154 chr14:65511158 nonsynonymous SNV 0.967 1 25 hm5C_associated_SNPs_127227 0 0 1 0 1 CHURC1-FNTB;FNTB chr14:65511161 5'GT 65511161 Upstream 4bp
chr13 114507889 114507889 1 + C A LUSC 114507885 + 114507865 114507905 41 TGTCCCAGCTGGCCTATGGCCCAGCCGTCCCACCACAGACC TGTCCCAGCTGGCCTATGGCCCAGACGTCCCACCACAGACC < 41bp 0.309901683974302 0.70498362347849 0.1929416 0.37931812 prediction 0.409967246956981 Functional Gain - TMEM255B ENSG00000184497 CDS Human protein_coding chr13:114507885 chr13:114507889 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_127228 0 0 0 0 1 TMEM255B chr13:114507858 3'AG 114507858 Downstream 32bp
chrX 140993229 140993229 1 + T G rs150896199 140993225 + 140993205 140993245 41 TATGCCTACTGCTGGGATGCCGAGTCTTCTCCAGAGTTCCT TATGCCTACTGCTGGGATGCCGAGGCTTCTCCAGAGTTCCT < 41bp 0.539551157502792 0.744527886494469 0.056466073 0.43251035 prediction 0.409953457983353 Functional Gain - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140993225 chrX:140993229 nonsynonymous SNV 0.027 1 25 hm5C_associated_SNPs_127232 0 0 1 0 1 MAGEC1 chrX:140993195 3'AG 140993195 Downstream 35bp
chr11 69951883 69951883 1 + C T KIRP 69951882 + 69951862 69951902 41 TCCTTTTTCGACAGCAAAACCCGGAGCACGATTGTAAGTAT TCCTTTTTCGACAGCAAAACCTGGAGCACGATTGTAAGTAT < 41bp 0.630515183799365 0.835489833995597 0.7997052 0.34782895 prediction 0.409949300392464 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:69951882 chr11:69951883 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_127234 0 0 0 2 2 ANO1 chr11:69951840 3'AG 69951840 Downstream 44bp
chr11 69951883 69951883 1 + C T KIRP 69951882 + 69951862 69951902 41 TCCTTTTTCGACAGCAAAACCCGGAGCACGATTGTAAGTAT TCCTTTTTCGACAGCAAAACCTGGAGCACGATTGTAAGTAT < 41bp 0.630515183799365 0.835489833995597 0.7997052 0.34782895 prediction 0.409949300392464 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:69951882 chr11:69951883 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_127234 0 0 0 2 2 ANO1 chr11:69951894 5'GT 69951894 Upstream 12bp
chr6 2785256 2785256 1 + T C STAD 2785253 + 2785233 2785273 41 ATTGGTAGGTGCTTCTGGCCCAGTGTGTGGTCTACTTTGCC ATTGGTAGGTGCTTCTGGCCCAGCGTGTGGTCTACTTTGCC < 41bp 0.518038059485351 0.723012208195065 0.5596974 0.38022155 prediction 0.409948297419428 Functional Gain - WRNIP1 ENSG00000124535 CDS Human protein_coding chr6:2785253 chr6:2785256 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_127235 0 0 1 0 1 WRNIP1 chr6:2785241 3'AG 2785241 Downstream 16bp
chr15 41576236 41576236 1 + C A rs111627022 41576235 + 41576215 41576255 41 AGATGGCGGAGTAAGGCGTGCCGCTGCAAACTGGCCTCTGG AGATGGCGGAGTAAGGCGTGCAGCTGCAAACTGGCCTCTGG < 41bp 0.608529625638775 0.81349104972384 0.43539977 0.6031281 prediction 0.409922848170131 Functional Gain - OIP5-AS1 ENSG00000247556 ncRNA_exonic Human processed_transcript chr15:41576235 chr15:41576236 . . 0 22 hm5C_associated_SNPs_127238 0 0 1 0 1 OIP5-AS1 chr15:41576308 5'GT 41576308 Upstream 73bp
chr8 36788657 36788657 1 + C A rs60599552 36788653 + 36788633 36788673 41 CTTACACGAAACCATTTTATCAGACGTTAATGTGAGTCTAC CTTACACGAAACCATTTTATCAGAAGTTAATGTGAGTCTAC < 41bp 0.31575347118329 0.704959327555489 0.8970006 0.89545953 prediction 0.409918655110977 Functional Gain - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36788653 chr8:36788657 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_127239 0 0 0 0 1 KCNU1 chr8:36788663 5'GT 36788663 Upstream 7bp
chr9 141070301 141070301 1 + A G UCEC 141070298 + 141070278 141070318 41 CTATCTGCCGAGTCGAGTCGCTCAATCTGCCTCTCTTAAAC CTATCTGCCGAGTCGAGTCGCTCGATCTGCCTCTCTTAAAC < 41bp 0.607252434550385 0.812211518032294 0.5428016 0.1354551 prediction 0.409918166963818 Functional Gain - TUBBP5 ENSG00000159247 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:141070298 chr9:141070301 . . 0 24 hm5C_associated_SNPs_127240 0 0 0 0 1 TUBBP5 chr9:141070353 5'GT 141070353 Upstream 53bp
chr1 1961466 1961466 1 + C T rs28398772 1961465 + 1961445 1961485 41 CCTCTTCTCCCTCTCTGCTGCCGGCGTCACGCAGGAGCTGG CCTCTTCTCCCTCTCTGCTGCTGGCGTCACGCAGGAGCTGG < 41bp 0.565919153550252 0.770877557764933 0.74069154 0.2935702 prediction 0.409916808429362 Functional Gain - GABRD ENSG00000187730 CDS Human protein_coding chr1:1961465 chr1:1961466 synonymous SNV . 0 22 hm5C_associated_SNPs_127241 0 0 0 0 1 GABRD chr1:1961422 3'AG 1961422 Downstream 45bp
chr11 44072941 44072941 1 + T G STAD 44072937 + 44072917 44072957 41 ACTACTGCAGGGCACCTACCCGACTTGACCCAGAAAATGTG ACTACTGCAGGGCACCTACCCGACGTGACCCAGAAAATGTG < 41bp 0.515809491880055 0.72076477636959 0.09853479 0.2746073 prediction 0.409910568979068 Functional Gain - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44072937 chr11:44072941 nonsynonymous SNV 0.296 4 25 hm5C_associated_SNPs_127243 0 0 0 0 2 ACCSL chr11:44072885 3'AG 44072885 Downstream 57bp
chr11 44072941 44072941 1 + T G STAD 44072937 + 44072917 44072957 41 ACTACTGCAGGGCACCTACCCGACTTGACCCAGAAAATGTG ACTACTGCAGGGCACCTACCCGACGTGACCCAGAAAATGTG < 41bp 0.515809491880055 0.72076477636959 0.09853479 0.2746073 prediction 0.409910568979068 Functional Gain - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44072937 chr11:44072941 nonsynonymous SNV 0.296 4 25 hm5C_associated_SNPs_127243 0 0 0 0 2 ACCSL chr11:44072954 5'GT 44072954 Upstream 14bp
chr1 156756499 156756499 1 + C T UCEC 156756498 + 156756478 156756518 41 CTCCTGCCCCATGCCTTCTCCCGCAAACCCTCGGATGGCTC CTCCTGCCCCATGCCTTCTCCTGCAAACCCTCGGATGGCTC < 41bp 0.434085625606075 0.704953877073864 0.12721294 0.24214718 prediction 0.409907754147728 Functional Gain - PRCC ENSG00000143294 CDS Human protein_coding chr1:156756498 chr1:156756499 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_127244 0 0 1 0 1 PRCC chr1:156756400 3'AG 156756400 Downstream 100bp
chr4 89326076 89326076 1 + C T STAD 89326075 + 89326055 89326095 41 AAAACCCTGCCAGAAATAAGCCGAATTAGCCAGTCCATGGC AAAACCCTGCCAGAAATAAGCTGAATTAGCCAGTCCATGGC < 41bp 0.448298741676562 0.704945653137442 0.18786731 0.2480146 prediction 0.409891306274883 Functional Gain - HERC6 ENSG00000138642 CDS Human protein_coding chr4:89326075 chr4:89326076 stopgain 0.894 0 22 hm5C_associated_SNPs_127245 0 0 0 0 2 HERC6 chr4:89326028 3'AG 89326028 Downstream 49bp
chr4 89326076 89326076 1 + C T STAD 89326075 + 89326055 89326095 41 AAAACCCTGCCAGAAATAAGCCGAATTAGCCAGTCCATGGC AAAACCCTGCCAGAAATAAGCTGAATTAGCCAGTCCATGGC < 41bp 0.448298741676562 0.704945653137442 0.18786731 0.2480146 prediction 0.409891306274883 Functional Gain - HERC6 ENSG00000138642 CDS Human protein_coding chr4:89326075 chr4:89326076 stopgain 0.894 0 22 hm5C_associated_SNPs_127245 0 0 0 0 2 HERC6 chr4:89326149 5'GT 89326149 Upstream 74bp
chr19 39589193 39589193 1 + C T COAD 39589192 + 39589172 39589212 41 CCGTCGGGGCCCCTGCCCCTCCGCGCCCAGGGCACCTTCGT CCGTCGGGGCCCCTGCCCCTCTGCGCCCAGGGCACCTTCGT < 41bp 0.615445164169108 0.820385843965786 0.10765743 0.12942475 prediction 0.409881359593356 Functional Gain - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39589192 chr19:39589193 nonsynonymous SNV 0.004 3 22 hm5C_associated_SNPs_127249 0 0 0 0 1 ACP7 chr19:39589098 3'AG 39589098 Downstream 96bp
chr16 20926917 20926917 1 + C T STAD 20926916 + 20926896 20926936 41 CAAGAAGTCCTTGGCCTCTACCGCAGCATTTTCAGGCTTGC CAAGAAGTCCTTGGCCTCTACTGCAGCATTTTCAGGCTTGC < 41bp 0.637056292860032 0.841994340367265 0.4693749 0.37318316 prediction 0.409876095014466 Functional Gain - LYRM1 ENSG00000102897 CDS Human protein_coding chr16:20926916 chr16:20926917 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_127252 0 0 1 0 1 LYRM1 chr16:20926878 3'AG 20926878 Downstream 40bp
chr3 197908863 197908863 1 + C T rs556913781 197908862 + 197908842 197908882 41 CCCTCTGGGCACGCCTCATGCCAGGTGCATCTGTGGACAGG CCCTCTGGGCACGCCTCATGCTAGGTGCATCTGTGGACAGG < 41bp 0.567764177623327 0.772701856701434 0.9137352 0.83751905 prediction 0.409875358156215 Functional Gain - FAM157A;FAM157B ENSG00000236438 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:197908862 chr3:197908863 . . 0 22 hm5C_associated_SNPs_127253 0 0 0 3 2 FAM157A;FAM157B chr3:197908798 3'AG 197908798 Downstream 66bp
chr3 197908863 197908863 1 + C T rs556913781 197908862 + 197908842 197908882 41 CCCTCTGGGCACGCCTCATGCCAGGTGCATCTGTGGACAGG CCCTCTGGGCACGCCTCATGCTAGGTGCATCTGTGGACAGG < 41bp 0.567764177623327 0.772701856701434 0.9137352 0.83751905 prediction 0.409875358156215 Functional Gain - FAM157A;FAM157B ENSG00000236438 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:197908862 chr3:197908863 . . 0 22 hm5C_associated_SNPs_127253 0 0 0 3 2 FAM157A;FAM157B chr3:197908929 5'GT 197908929 Upstream 67bp
chr3 111795927 111795927 1 + T C LAML 111795924 + 111795904 111795944 41 CAGCCAATATGCATTCCTCCCACTGGTCAGAGAGTTCGCAG CAGCCAATATGCATTCCTCCCACCGGTCAGAGAGTTCGCAG < 41bp 0.557358187108168 0.7622956627062 0.04223746 0.102745295 prediction 0.409874951196063 Functional Gain - TMPRSS7 ENSG00000176040 CDS Human protein_coding chr3:111795924 chr3:111795927 synonymous SNV . 0 24 hm5C_associated_SNPs_127254 0 0 0 0 1 TMPRSS7 chr3:111795991 5'GT 111795991 Upstream 65bp
chrX 128881676 128881676 1 + A G HNSC 128881673 + 128881653 128881693 41 TGTGGACCTGGTATGGGGATCAGAGAGGCCACCGGTTCCAA TGTGGACCTGGTATGGGGATCAGGGAGGCCACCGGTTCCAA < 41bp 0.632040068404064 0.836972402935071 0.9052417 0.9307431 prediction 0.409864669062013 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128881673 chrX:128881676 nonsynonymous SNV 0.907 1 24 hm5C_associated_SNPs_127258 0 0 0 0 2 XPNPEP2 chrX:128881583 3'AG 128881583 Downstream 94bp
chrX 128881676 128881676 1 + A G HNSC 128881673 + 128881653 128881693 41 TGTGGACCTGGTATGGGGATCAGAGAGGCCACCGGTTCCAA TGTGGACCTGGTATGGGGATCAGGGAGGCCACCGGTTCCAA < 41bp 0.632040068404064 0.836972402935071 0.9052417 0.9307431 prediction 0.409864669062013 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128881673 chrX:128881676 nonsynonymous SNV 0.907 1 24 hm5C_associated_SNPs_127258 0 0 0 0 2 XPNPEP2 chrX:128881729 5'GT 128881729 Upstream 54bp
chr10 60546785 60546785 1 + T A SKCM 60546781 + 60546761 60546801 41 AAAAAAGTGATGGAAGAAACCGGATGCCATATCCACTTTCC AAAAAAGTGATGGAAGAAACCGGAAGCCATATCCACTTTCC < 41bp 0.382809637543239 0.704927380302242 0.64756423 0.4870998 prediction 0.409854760604484 Functional Gain - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60546781 chr10:60546785 nonsynonymous SNV 0.933 3 25 hm5C_associated_SNPs_127260 0 0 1 0 1 BICC1 chr10:60546841 5'GT 60546841 Upstream 57bp
chr4 122728757 122728757 1 + T C UCS 122728754 + 122728734 122728774 41 CACCACATGCCCATTTGTGTCAGTTTTGCCTTTTTCCAGCA CACCACATGCCCATTTGTGTCAGCTTTGCCTTTTTCCAGCA < 41bp 0.527910766048178 0.732838126026687 0.12751758 0.33307308 prediction 0.409854719957016 Functional Gain - EXOSC9 ENSG00000123737 CDS Human protein_coding chr4:122728754 chr4:122728757 synonymous SNV . 0 24 hm5C_associated_SNPs_127261 0 0 1 1 1 EXOSC9 chr4:122728695 3'AG 122728695 Downstream 63bp
chr17 41930343 41930343 1 + C T UCEC 41930342 + 41930322 41930362 41 TGGCTACAACACGCCTGCAGCCCAAGGCAAAAGCTCAGCAA TGGCTACAACACGCCTGCAGCTCAAGGCAAAAGCTCAGCAA < 41bp 0.432526996800706 0.704916842760949 0.09232101 0.32254565 prediction 0.409833685521897 Functional Gain - CD300LG ENSG00000161649 CDS Human protein_coding chr17:41930342 chr17:41930343 nonsynonymous SNV 0.880 1 22 hm5C_associated_SNPs_127267 0 0 0 0 2 CD300LG chr17:41930280 3'AG 41930280 Downstream 64bp
chr17 41930343 41930343 1 + C T UCEC 41930342 + 41930322 41930362 41 TGGCTACAACACGCCTGCAGCCCAAGGCAAAAGCTCAGCAA TGGCTACAACACGCCTGCAGCTCAAGGCAAAAGCTCAGCAA < 41bp 0.432526996800706 0.704916842760949 0.09232101 0.32254565 prediction 0.409833685521897 Functional Gain - CD300LG ENSG00000161649 CDS Human protein_coding chr17:41930342 chr17:41930343 nonsynonymous SNV 0.880 1 22 hm5C_associated_SNPs_127267 0 0 0 0 2 CD300LG chr17:41930381 5'GT 41930381 Upstream 39bp
chrX 47088144 47088144 1 + C A COAD 47088143 + 47088123 47088163 41 CCCACAGGCAGGCCAGCTTTCCGCGTGGTGGACACCGAGTT CCCACAGGCAGGCCAGCTTTCAGCGTGGTGGACACCGAGTT < 41bp 0.633898243892634 0.838805956107321 0.9043097 0.9119295 prediction 0.409815424429374 Functional Gain - CDK16 ENSG00000102225 CDS Human protein_coding chrX:47088143 chrX:47088144 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_127270 0 0 1 0 1 CDK16 chrX:47088130 3'AG 47088130 Downstream 15bp
chr16 89160329 89160329 1 + C G rs145228567 89160328 + 89160308 89160348 41 GGCCGGAACCCGGCCCGACCCCGGCGCGCGCGCGGCGGAGG GGCCGGAACCCGGCCCGACCCGGGCGCGCGCGCGGCGGAGG < 41bp 0.676817163338676 0.88172403098545 0.74361044 0.90322614 prediction 0.409813735293549 Functional Gain - ACSF3 ENSG00000176715 UTR5 Human protein_coding chr16:89160328 chr16:89160329 . . 0 22 hm5C_associated_SNPs_127271 0 0 1 0 2 ACSF3 chr16:89160400 5'GT 89160400 Upstream 72bp
chr16 89160329 89160329 1 + C G rs145228567 89160328 + 89160308 89160348 41 GGCCGGAACCCGGCCCGACCCCGGCGCGCGCGCGGCGGAGG GGCCGGAACCCGGCCCGACCCGGGCGCGCGCGCGGCGGAGG < 41bp 0.676817163338676 0.88172403098545 0.74361044 0.90322614 prediction 0.409813735293549 Functional Gain - ACSF3 ENSG00000176715 UTR5 Human protein_coding chr16:89160328 chr16:89160329 . . 0 22 hm5C_associated_SNPs_127271 0 0 1 0 2 ACSF3 chr16:89160404 5'GT 89160404 Upstream 76bp
chr11 376346 376346 1 + C T UCEC 376345 + 376325 376365 41 GAGCCTTCCTCTTCCTCAACCCGGACGGTGAGTGTCCGCAG GAGCCTTCCTCTTCCTCAACCTGGACGGTGAGTGTCCGCAG < 41bp 0.615449201090877 0.820354437100793 0.10436711 0.1416724 prediction 0.409810472019832 Functional Gain - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:376345 chr11:376346 nonsynonymous SNV 0.881 0 22 hm5C_associated_SNPs_127272 0 0 1 0 2 B4GALNT4 chr11:376251 3'AG 376251 Downstream 96bp
chr11 376346 376346 1 + C T UCEC 376345 + 376325 376365 41 GAGCCTTCCTCTTCCTCAACCCGGACGGTGAGTGTCCGCAG GAGCCTTCCTCTTCCTCAACCTGGACGGTGAGTGTCCGCAG < 41bp 0.615449201090877 0.820354437100793 0.10436711 0.1416724 prediction 0.409810472019832 Functional Gain - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:376345 chr11:376346 nonsynonymous SNV 0.881 0 22 hm5C_associated_SNPs_127272 0 0 1 0 2 B4GALNT4 chr11:376351 5'GT 376351 Upstream 6bp
chr10 85902493 85902493 1 + T C BRCA 85902490 + 85902470 85902510 41 AGAGGCAGCATTGGAACCATCGATGGAAAAAATATTTAAAA AGAGGCAGCATTGGAACCATCGACGGAAAAAATATTTAAAA < 41bp 0.549140112359074 0.75404286722976 0.10046509 0.41523582 prediction 0.409805509741372 Functional Gain - GHITM ENSG00000165678 CDS Human protein_coding chr10:85902490 chr10:85902493 nonsynonymous SNV 0.990 0 24 hm5C_associated_SNPs_127275 0 0 1 0 2 GHITM chr10:85902411 3'AG 85902411 Downstream 83bp
chr10 85902493 85902493 1 + T C BRCA 85902490 + 85902470 85902510 41 AGAGGCAGCATTGGAACCATCGATGGAAAAAATATTTAAAA AGAGGCAGCATTGGAACCATCGACGGAAAAAATATTTAAAA < 41bp 0.549140112359074 0.75404286722976 0.10046509 0.41523582 prediction 0.409805509741372 Functional Gain - GHITM ENSG00000165678 CDS Human protein_coding chr10:85902490 chr10:85902493 nonsynonymous SNV 0.990 0 24 hm5C_associated_SNPs_127275 0 0 1 0 2 GHITM chr10:85902510 5'GT 85902510 Upstream 18bp
chr7 76054523 76054523 1 + T C rs151289035 76054520 + 76054500 76054540 41 GGGCCCAGAGGCCTGTGAGCCTCTGGTCTCCATGGACACAG GGGCCCAGAGGCCTGTGAGCCTCCGGTCTCCATGGACACAG < 41bp 0.530070498828238 0.734972173731584 0.020054221 0.11376059 prediction 0.409803349806691 Functional Gain - ZP3 ENSG00000188372 CDS Human protein_coding chr7:76054520 chr7:76054523 nonsynonymous SNV 0.367 1 24 hm5C_associated_SNPs_127276 0 0 0 0 1 ZP3 chr7:76054593 5'GT 76054593 Upstream 71bp
chr17 34964184 34964184 1 + C T SKCM 34964183 + 34964163 34964203 41 GATCCCCAGTCCTCCGAGATCCCCATCATGAGTTGCTTGGA GATCCCCAGTCCTCCGAGATCTCCATCATGAGTTGCTTGGA < 41bp 0.657933612314832 0.862828116400727 0.037178338 0.9368838 prediction 0.409789008171789 Functional Gain - MRM1 ENSG00000129282 CDS Human other chr17:34964183 chr17:34964184 nonsynonymous SNV 0.017 1 22 hm5C_associated_SNPs_127278 0 0 1 0 2 MRM1 chr17:34964106 3'AG 34964106 Downstream 79bp
chr17 34964184 34964184 1 + C T SKCM 34964183 + 34964163 34964203 41 GATCCCCAGTCCTCCGAGATCCCCATCATGAGTTGCTTGGA GATCCCCAGTCCTCCGAGATCTCCATCATGAGTTGCTTGGA < 41bp 0.657933612314832 0.862828116400727 0.037178338 0.9368838 prediction 0.409789008171789 Functional Gain - MRM1 ENSG00000129282 CDS Human other chr17:34964183 chr17:34964184 nonsynonymous SNV 0.017 1 22 hm5C_associated_SNPs_127278 0 0 1 0 2 MRM1 chr17:34964238 5'GT 34964238 Upstream 55bp
chr11 61916295 61916295 1 + C A UCEC 61916294 + 61916274 61916314 41 GCAGCAGGGGCCAGCAAGGCCCTGAATGTGACTGTGGACGT GCAGCAGGGGCCAGCAAGGCCATGAATGTGACTGTGGACGT < 41bp 0.439568199211784 0.704893643293704 0.10394877 0.28996295 prediction 0.409787286587408 Functional Gain - INCENP ENSG00000149503 CDS Human protein_coding chr11:61916294 chr11:61916295 nonsynonymous SNV 0.003 3 22 hm5C_associated_SNPs_127280 0 0 1 0 2 INCENP chr11:61916211 3'AG 61916211 Downstream 85bp
chr11 61916295 61916295 1 + C A UCEC 61916294 + 61916274 61916314 41 GCAGCAGGGGCCAGCAAGGCCCTGAATGTGACTGTGGACGT GCAGCAGGGGCCAGCAAGGCCATGAATGTGACTGTGGACGT < 41bp 0.439568199211784 0.704893643293704 0.10394877 0.28996295 prediction 0.409787286587408 Functional Gain - INCENP ENSG00000149503 CDS Human protein_coding chr11:61916294 chr11:61916295 nonsynonymous SNV 0.003 3 22 hm5C_associated_SNPs_127280 0 0 1 0 2 INCENP chr11:61916318 5'GT 61916318 Upstream 24bp
chr17 45360886 45360886 1 + C A COAD 45360885 + 45360865 45360905 41 CCCAGGTCACTCAAGTCAGTCCCCAGAGGATTGCACTCCGG CCCAGGTCACTCAAGTCAGTCACCAGAGGATTGCACTCCGG < 41bp 0.647584582510318 0.852476509668176 0.2761231 0.37714738 prediction 0.409783854315718 Functional Gain - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45360885 chr17:45360886 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_127281 0 0 0 0 1 ITGB3 chr17:45360915 5'GT 45360915 Upstream 30bp
chr19 42265202 42265202 1 + T C GBM 42265200 + 42265180 42265220 41 TCCAGCAACAACTCCAACCCCGTGGAGGACAAGGATGCTGT TCCAGCAACAACTCCAACCCCGCGGAGGACAAGGATGCTGT < 41bp 0.646268760624556 0.851153771360387 0.07870558 0.12375525 prediction 0.409770021471662 Functional Gain - CEACAM6 ENSG00000086548 CDS Human other chr19:42265200 chr19:42265202 nonsynonymous SNV 0.783 0 23 hm5C_associated_SNPs_127283 0 0 0 0 1 CEACAM6 chr19:42265157 3'AG 42265157 Downstream 46bp
chr12 110600761 110600761 1 + A G UCEC 110600758 + 110600738 110600778 41 CCGTAAAAAAGAAGCCAAAGCTGAGGAACTTCAGGAGGCCA CCGTAAAAAAGAAGCCAAAGCTGGGGAACTTCAGGAGGCCA < 41bp 0.601875189930311 0.806756270169761 0.1988782 0.52704394 prediction 0.4097621604789 Functional Gain - IFT81 ENSG00000122970 CDS Human protein_coding chr12:110600758 chr12:110600761 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_127285 0 0 1 0 1 IFT81 chr12:110600724 3'AG 110600724 Downstream 38bp
chr11 2338609 2338609 1 + T C UCEC 2338607 + 2338587 2338627 41 CAGCCCCAGGAGCCCAGCCTCTTGAGATGCTCCCAGGGTGG CAGCCCCAGGAGCCCAGCCTCTCGAGATGCTCCCAGGGTGG < 41bp 0.640621286569785 0.845498054624906 0.7685086 0.947612 prediction 0.409753536110241 Functional Gain - TSPAN32 ENSG00000064201 CDS Human other chr11:2338607 chr11:2338609 nonsynonymous SNV 0.233 1 23 hm5C_associated_SNPs_127288 0 0 0 0 1 TSPAN32 chr11:2338574 3'AG 2338574 Downstream 36bp
chr16 1412514 1412514 1 + C T COAD 1412513 + 1412493 1412533 41 CCAGGTAGAGCAGGACCTGGCCGATGAGCTGATCACCCCCC CCAGGTAGAGCAGGACCTGGCTGATGAGCTGATCACCCCCC < 41bp 0.601500508446312 0.806376538118415 0.76240313 0.5057023 prediction 0.409752059344207 Functional Gain - GNPTG ENSG00000090581 CDS Human protein_coding chr16:1412513 chr16:1412514 synonymous SNV . 0 22 hm5C_associated_SNPs_127289 0 0 1 0 1 GNPTG chr16:1412535 5'GT 1412535 Upstream 22bp
chr22 31529191 31529191 1 + C A COAD 31529187 + 31529167 31529207 41 CCGCATGGAAACAGTGTTCGCCCGCAGCTCCTGGGACTGGA CCGCATGGAAACAGTGTTCGCCCGAAGCTCCTGGGACTGGA < 41bp 0.290395774178737 0.704872468179722 0.09711853 0.3089763 prediction 0.409744936359445 Functional Gain - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31529187 chr22:31529191 synonymous SNV . 0 25 hm5C_associated_SNPs_127290 0 0 0 0 1 INPP5J chr22:31529221 5'GT 31529221 Upstream 31bp
chr20 25188027 25188027 1 + C T SKCM 25188026 + 25188006 25188046 41 GTCTTCCAGTTCACCCGGCCCCCCAGAGGTACCCGCCTCTC GTCTTCCAGTTCACCCGGCCCTCCAGAGGTACCCGCCTCTC < 41bp 0.626813700553363 0.831685728364245 0.2902835 0.94832796 prediction 0.409744055621764 Functional Gain - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25188026 chr20:25188027 nonsynonymous SNV 0.086 0 22 hm5C_associated_SNPs_127291 0 0 1 0 1 ENTPD6 chr20:25188033 5'GT 25188033 Upstream 7bp
chr1 203276285 203276285 1 + C G LUAD 203276284 + 203276264 203276304 41 CCGTCCAAGGGCTCCGGCTACCGCTGCATTCGCATCAACCA CCGTCCAAGGGCTCCGGCTACGGCTGCATTCGCATCAACCA < 41bp 0.383882934007691 0.704870931119437 0.068253726 0.16891828 prediction 0.409741862238874 Functional Gain - BTG2 ENSG00000159388 CDS Human protein_coding chr1:203276284 chr1:203276285 nonsynonymous SNV 0.988 4 22 hm5C_associated_SNPs_127292 0 0 1 0 1 BTG2 chr1:203276232 3'AG 203276232 Downstream 54bp
chr18 29797785 29797785 1 + C T rs200254969 29797784 + 29797764 29797804 41 TGTGAAAAGAGAGGCTCCACCCGAGACACCATAGTCATTGC TGTGAAAAGAGAGGCTCCACCTGAGACACCATAGTCATTGC < 41bp 0.613157086921637 0.818020928238397 0.19420952 0.07656777 prediction 0.409727682633521 Functional Gain - MEP1B ENSG00000141434 CDS Human protein_coding chr18:29797784 chr18:29797785 stopgain 0.344 0 22 hm5C_associated_SNPs_127294 0 0 1 0 1 MEP1B chr18:29797724 3'AG 29797724 Downstream 62bp
chr21 43979097 43979097 1 + A G LUSC 43979094 + 43979074 43979114 41 GAGATGCAGTGCCTGCTGCTCTCAGATGGGAAGGGCTCCAT GAGATGCAGTGCCTGCTGCTCTCGGATGGGAAGGGCTCCAT < 41bp 0.620356377136793 0.825219644221934 0.111790836 0.2666669 prediction 0.409726534170284 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43979094 chr21:43979097 synonymous SNV . 0 24 hm5C_associated_SNPs_127295 0 0 0 0 1 SLC37A1 chr21:43979068 3'AG 43979068 Downstream 30bp
chr17 34923614 34923614 1 + A G UCEC 34923611 + 34923591 34923631 41 TAGAAACATATCTGCGAAAACACAGGTAAGTCTGATGGTTG TAGAAACATATCTGCGAAAACACGGGTAAGTCTGATGGTTG < 41bp 0.57108183810666 0.775931755554278 0.31299436 0.5702533 prediction 0.409699834895237 Functional Gain - GGNBP2 ENSG00000005955 CDS Human other chr17:34923611 chr17:34923614 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_127301 0 0 1 0 1 GGNBP2 chr17:34923615 5'GT 34923615 Upstream 2bp
chr5 148577911 148577911 1 + T C UCEC 148577909 + 148577889 148577929 41 GACTTCATCACAGGCGAAGTCATCTCGGCCCTGGGCCGCAC GACTTCATCACAGGCGAAGTCACCTCGGCCCTGGGCCGCAC < 41bp 0.410179610263752 0.704847988073955 0.11522329 0.17571634 prediction 0.409695976147909 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148577909 chr5:148577911 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_127302 0 0 0 0 1 ABLIM3 chr5:148577965 5'GT 148577965 Upstream 55bp
chr8 22262246 22262246 1 + C A rs34328787 22262242 + 22262222 22262262 41 CCATGAAGCTGCTGCTGCTGCACCCGGCCTTCCAGAGCTGC CCATGAAGCTGCTGCTGCTGCACCAGGCCTTCCAGAGCTGC < 41bp 0.283716937645615 0.70484422019957 0.08626419 0.08290064 prediction 0.40968844039914 Functional Gain - SLC39A14 ENSG00000104635 CDS Human protein_coding chr8:22262242 chr8:22262246 nonsynonymous SNV 0.484 1 25 hm5C_associated_SNPs_127303 0 0 1 0 1 SLC39A14 chr8:22262209 3'AG 22262209 Downstream 38bp
chr9 100070318 100070318 1 + C T STAD 100070317 + 100070297 100070337 41 GTTTCCTGGACGACGGCTTCCCGGCAGGGGCATCCAGCCAG GTTTCCTGGACGACGGCTTCCTGGCAGGGGCATCCAGCCAG < 41bp 0.460028103104256 0.704839059167255 0.058941036 0.031266153 prediction 0.40967811833451 Functional Gain - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100070317 chr9:100070318 synonymous SNV . 0 22 hm5C_associated_SNPs_127305 0 0 0 0 2 CCDC180 chr9:100070265 3'AG 100070265 Downstream 54bp
chr9 100070318 100070318 1 + C T STAD 100070317 + 100070297 100070337 41 GTTTCCTGGACGACGGCTTCCCGGCAGGGGCATCCAGCCAG GTTTCCTGGACGACGGCTTCCTGGCAGGGGCATCCAGCCAG < 41bp 0.460028103104256 0.704839059167255 0.058941036 0.031266153 prediction 0.40967811833451 Functional Gain - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100070317 chr9:100070318 synonymous SNV . 0 22 hm5C_associated_SNPs_127305 0 0 0 0 2 CCDC180 chr9:100070414 5'GT 100070414 Upstream 97bp
chr2 176973652 176973652 1 + C T UCEC 176973651 + 176973631 176973671 41 GCAGTTGCCCCCCAGCGGTCCCGGAAAAAGCGCTGTCCCTA GCAGTTGCCCCCCAGCGGTCCTGGAAAAAGCGCTGTCCCTA < 41bp 0.58935008807967 0.794188966849823 0.55989677 0.38134187 prediction 0.409677757540307 Functional Gain - HOXD11 ENSG00000128713 CDS Human protein_coding chr2:176973651 chr2:176973652 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_127306 0 0 1 0 1 HOXD11 chr2:176973635 3'AG 176973635 Downstream 18bp
chr20 30155916 30155916 1 + C T UCEC 30155915 + 30155895 30155935 41 CGGAAATCCTGCCTCATACCCCGAGGCTCACCCACTTCCCC CGGAAATCCTGCCTCATACCCTGAGGCTCACCCACTTCCCC < 41bp 0.522274450926109 0.727113003835921 0.92180383 0.69611806 prediction 0.409677105819624 Functional Gain - HM13 ENSG00000101294 CDS Human protein_coding chr20:30155915 chr20:30155916 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_127307 0 0 1 0 1 HM13 chr20:30155881 3'AG 30155881 Downstream 36bp
chr7 106508035 106508035 1 + T C LUSC 106508033 + 106508013 106508053 41 CTGGAGAACTATAAACAGCCCGTGGTGCTGAGAGAGGACAA CTGGAGAACTATAAACAGCCCGCGGTGCTGAGAGAGGACAA < 41bp 0.643266077571926 0.848104156652992 0.07110244 0.042957187 prediction 0.409676158162133 Functional Gain - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106508033 chr7:106508035 nonsynonymous SNV 0.989 1 23 hm5C_associated_SNPs_127308 0 0 0 0 1 PIK3CG chr7:106507995 3'AG 106507995 Downstream 41bp
chr6 100448757 100448757 1 + C A rs563210131 100448753 + 100448733 100448773 41 CGGGGCAGAGATTGACAAAGCAACCCAAAGCAGCAGCTGCC CGGGGCAGAGATTGACAAAGCAACACAAAGCAGCAGCTGCC < 41bp 0.321707720232082 0.70483757412745 0.0316886 0.015600055 prediction 0.409675148254899 Functional Gain - MCHR2-AS1 ENSG00000229315 ncRNA_exonic Human antisense chr6:100448753 chr6:100448757 . . 0 25 hm5C_associated_SNPs_127309 0 0 0 0 1 MCHR2-AS1 chr6:100448670 3'AG 100448670 Downstream 88bp
chr6 170632273 170632273 1 + C G COAD 170632269 + 170632249 170632289 41 CCCTAGAAGATGAGCTTGACCAGGCCTTACCCAGCCAGGCC CCCTAGAAGATGAGCTTGACCAGGGCTTACCCAGCCAGGCC < 41bp 0.678664912432813 0.883495421407299 0.61263627 0.84023297 prediction 0.409661017948972 Functional Gain - FAM120B ENSG00000112584 CDS Human protein_coding chr6:170632269 chr6:170632273 nonsynonymous SNV 0.986 2 25 hm5C_associated_SNPs_127311 0 0 1 0 1 FAM120B chr6:170632347 5'GT 170632347 Upstream 75bp
chr18 33800116 33800116 1 + C T UCS 33800115 + 33800095 33800135 41 CCTGAGTCAGAAGCAGGAACCCCGGCTCTGCCTGATCCAGC CCTGAGTCAGAAGCAGGAACCTCGGCTCTGCCTGATCCAGC < 41bp 0.435621991424205 0.704826455677978 0.1780627 0.44012737 prediction 0.409652911355955 Functional Gain - MOCOS ENSG00000075643 CDS Human protein_coding chr18:33800115 chr18:33800116 synonymous SNV . 0 22 hm5C_associated_SNPs_127312 0 0 1 0 2 MOCOS chr18:33800018 3'AG 33800018 Downstream 99bp
chr18 33800116 33800116 1 + C T UCS 33800115 + 33800095 33800135 41 CCTGAGTCAGAAGCAGGAACCCCGGCTCTGCCTGATCCAGC CCTGAGTCAGAAGCAGGAACCTCGGCTCTGCCTGATCCAGC < 41bp 0.435621991424205 0.704826455677978 0.1780627 0.44012737 prediction 0.409652911355955 Functional Gain - MOCOS ENSG00000075643 CDS Human protein_coding chr18:33800115 chr18:33800116 synonymous SNV . 0 22 hm5C_associated_SNPs_127312 0 0 1 0 2 MOCOS chr18:33800180 5'GT 33800180 Upstream 65bp
chr19 10941028 10941028 1 + C G BLCA 10941027 + 10941007 10941047 41 ATCTCGGCCAGTTCGGATCCCCCCAGGGATTCCCCCAGGAG ATCTCGGCCAGTTCGGATCCCGCCAGGGATTCCCCCAGGAG < 41bp 0.394129465282533 0.704822238600344 0.21007231 0.45882788 prediction 0.409644477200689 Functional Gain - DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941027 chr19:10941028 synonymous SNV . 0 22 hm5C_associated_SNPs_127316 0 0 1 0 1 DNM2 chr19:10941054 5'GT 10941054 Upstream 27bp
chr3 130340679 130340679 1 + C T LUSC 130340678 + 130340658 130340698 41 GTTTCAGGGGCCTCCAGGACCCGGAGGAGAGGCAGGGAATC GTTTCAGGGGCCTCCAGGACCTGGAGGAGAGGCAGGGAATC < 41bp 0.623316605632413 0.828136901143532 0.8893689 0.83482945 prediction 0.409640591022239 Functional Gain - COL6A6 ENSG00000206384 CDS Human protein_coding chr3:130340678 chr3:130340679 synonymous SNV . 0 22 hm5C_associated_SNPs_127318 0 0 0 0 2 COL6A6 chr3:130340665 3'AG 130340665 Downstream 15bp
chr3 130340679 130340679 1 + C T LUSC 130340678 + 130340658 130340698 41 GTTTCAGGGGCCTCCAGGACCCGGAGGAGAGGCAGGGAATC GTTTCAGGGGCCTCCAGGACCTGGAGGAGAGGCAGGGAATC < 41bp 0.623316605632413 0.828136901143532 0.8893689 0.83482945 prediction 0.409640591022239 Functional Gain - COL6A6 ENSG00000206384 CDS Human protein_coding chr3:130340678 chr3:130340679 synonymous SNV . 0 22 hm5C_associated_SNPs_127318 0 0 0 0 2 COL6A6 chr3:130340727 5'GT 130340727 Upstream 49bp
chr20 2308853 2308853 1 + A G GBM 2308850 + 2308830 2308870 41 CGACATGCCCTTTATCTTCGCGGAGGTTAATGCCGACCGCA CGACATGCCCTTTATCTTCGCGGGGGTTAATGCCGACCGCA < 41bp 0.643990675022832 0.848807823919112 0.9136951 0.93836063 prediction 0.409634297792561 Functional Gain - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2308850 chr20:2308853 nonsynonymous SNV 0.785 5 24 hm5C_associated_SNPs_127320 0 0 0 0 1 TGM3 chr20:2308766 3'AG 2308766 Downstream 88bp
chr13 25435443 25435443 1 + C T UCEC 25435442 + 25435422 25435462 41 ATGGATTCACTGAAAAGATTCCGCAGTGCCATCTTTACCCT ATGGATTCACTGAAAAGATTCTGCAGTGCCATCTTTACCCT < 41bp 0.447787780312487 0.704813807848225 0.05861023 0.1015203 prediction 0.409627615696451 Functional Gain - RNF17 ENSG00000132972 CDS Human protein_coding chr13:25435442 chr13:25435443 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_127324 0 0 0 1 1 RNF17 chr13:25435406 3'AG 25435406 Downstream 38bp
chr7 43495992 43495992 1 + C T rs201757499 43495991 + 43495971 43496011 41 GTCCGACGGCAGCAGCCACCCCGGATGGCATGCGGAGATCG GTCCGACGGCAGCAGCCACCCTGGATGGCATGCGGAGATCG < 41bp 0.627143669993103 0.831952194964184 0.57611996 0.5382402 prediction 0.409617049942161 Functional Gain - HECW1 ENSG00000002746 CDS Human protein_coding chr7:43495991 chr7:43495992 nonsynonymous SNV 0.432 3 22 hm5C_associated_SNPs_127326 0 0 0 0 2 HECW1 chr7:43495896 3'AG 43495896 Downstream 97bp
chr7 43495992 43495992 1 + C T rs201757499 43495991 + 43495971 43496011 41 GTCCGACGGCAGCAGCCACCCCGGATGGCATGCGGAGATCG GTCCGACGGCAGCAGCCACCCTGGATGGCATGCGGAGATCG < 41bp 0.627143669993103 0.831952194964184 0.57611996 0.5382402 prediction 0.409617049942161 Functional Gain - HECW1 ENSG00000002746 CDS Human protein_coding chr7:43495991 chr7:43495992 nonsynonymous SNV 0.432 3 22 hm5C_associated_SNPs_127326 0 0 0 0 2 HECW1 chr7:43496046 5'GT 43496046 Upstream 55bp
chr1 224377312 224377312 1 + C A UCEC 224377311 + 224377291 224377331 41 AGATAAAGTCCTTGATGAAACCTGATCCCAATTTGATATGG AGATAAAGTCCTTGATGAAACATGATCCCAATTTGATATGG < 41bp 0.454715429546404 0.704807889746861 0.10792637 0.10385665 prediction 0.409615779493722 Functional Gain - DEGS1 ENSG00000143753 CDS Human protein_coding chr1:224377311 chr1:224377312 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_127327 0 0 1 0 1 DEGS1 chr1:224377279 3'AG 224377279 Downstream 34bp
chr20 371972 371972 1 + T C rs6051637 371969 + 371949 371989 41 GCCCTGGCCGTGCTGGAGCCCTATGCGCGGCTGCCCCCGCA GCCCTGGCCGTGCTGGAGCCCTACGCGCGGCTGCCCCCGCA < 41bp 0.539119650291218 0.743925011936785 0.20745373 0.108430654 prediction 0.409610723291134 Functional Gain - TRIB3 ENSG00000101255 CDS Human protein_coding chr20:371969 chr20:371972 synonymous SNV . 0 24 hm5C_associated_SNPs_127330 0 0 1 0 1 TRIB3 chr20:371931 3'AG 371931 Downstream 42bp
chrX 150884676 150884676 1 + C A LIHC 150884675 + 150884655 150884695 41 CATGGACGCCAAGGGGAAAACCAAGAGCACCTGGTGATAGC CATGGACGCCAAGGGGAAAACAAAGAGCACCTGGTGATAGC < 41bp 0.43828162469018 0.704801532874917 0.3576305 0.32587206 prediction 0.409603065749834 Functional Gain - FATE1 ENSG00000147378 CDS Human protein_coding chrX:150884675 chrX:150884676 nonsynonymous SNV 0.161 2 22 hm5C_associated_SNPs_127333 0 0 0 0 1 FATE1 chrX:150884697 5'GT 150884697 Upstream 22bp
chr1 201263172 201263172 1 + C T UCEC 201263171 + 201263151 201263191 41 GGAATGGCTCATGGGGATATCCGGTAAGGAACTGCTTCCAT GGAATGGCTCATGGGGATATCTGGTAAGGAACTGCTTCCAT < 41bp 0.466750673326021 0.704800063680498 0.06687567 0.21179706 prediction 0.409600127360996 Functional Gain - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201263171 chr1:201263172 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_127334 0 0 0 0 1 PKP1 chr1:201263173 5'GT 201263173 Upstream 2bp
chr1 196952198 196952198 1 + C T LGG 196952197 + 196952177 196952217 41 AAGAAGGATGGTCACCAACACCGAAGTGTCTCAGTGAGTAA AAGAAGGATGGTCACCAACACTGAAGTGTCTCAGTGAGTAA < 41bp 0.58859605508249 0.793390456577121 0.18483296 0.17220822 prediction 0.409588802989263 Functional Gain - CFHR5 ENSG00000134389 CDS Human protein_coding chr1:196952197 chr1:196952198 nonsynonymous SNV 0.967 1 22 hm5C_associated_SNPs_127337 0 0 0 0 1 CFHR5 chr1:196952209 5'GT 196952209 Upstream 12bp
chr11 1467054 1467054 1 + A G rs34893167 1467051 + 1467031 1467071 41 GGCAAGCGGCGGCCAGAACGCAAATCCATGGAGGTGCTCAG GGCAAGCGGCGGCCAGAACGCAAGTCCATGGAGGTGCTCAG < 41bp 0.46613699828936 0.704792429314757 0.34467694 0.37927034 prediction 0.409584858629513 Functional Gain - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1467051 chr11:1467054 synonymous SNV . 0 24 hm5C_associated_SNPs_127338 0 0 0 0 2 BRSK2 chr11:1466987 3'AG 1466987 Downstream 68bp
chr11 1467054 1467054 1 + A G rs34893167 1467051 + 1467031 1467071 41 GGCAAGCGGCGGCCAGAACGCAAATCCATGGAGGTGCTCAG GGCAAGCGGCGGCCAGAACGCAAGTCCATGGAGGTGCTCAG < 41bp 0.46613699828936 0.704792429314757 0.34467694 0.37927034 prediction 0.409584858629513 Functional Gain - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1467051 chr11:1467054 synonymous SNV . 0 24 hm5C_associated_SNPs_127338 0 0 0 0 2 BRSK2 chr11:1467137 5'GT 1467137 Upstream 84bp
chr12 58340811 58340811 1 + A G LUSC 58340808 + 58340788 58340828 41 AAAGATAGACACTTTTCTTGCGAAGACTGTAATGGAAATGT AAAGATAGACACTTTTCTTGCGAGGACTGTAATGGAAATGT < 41bp 0.468919586073548 0.704780243202655 0.7148438 0.9037907 prediction 0.40956048640531 Functional Gain - ATP23 ENSG00000166896 CDS Human protein_coding chr12:58340808 chr12:58340811 synonymous SNV . 0 24 hm5C_associated_SNPs_127343 0 0 0 0 2 ATP23 chr12:58340778 3'AG 58340778 Downstream 34bp
chr12 58340811 58340811 1 + A G LUSC 58340808 + 58340788 58340828 41 AAAGATAGACACTTTTCTTGCGAAGACTGTAATGGAAATGT AAAGATAGACACTTTTCTTGCGAGGACTGTAATGGAAATGT < 41bp 0.468919586073548 0.704780243202655 0.7148438 0.9037907 prediction 0.40956048640531 Functional Gain - ATP23 ENSG00000166896 CDS Human protein_coding chr12:58340808 chr12:58340811 synonymous SNV . 0 24 hm5C_associated_SNPs_127343 0 0 0 0 2 ATP23 chr12:58340859 5'GT 58340859 Upstream 49bp
chr1 159557957 159557957 1 + C A LUSC 159557956 + 159557936 159557976 41 ATCATGTAAACTTGATCACACCGCTGGAGAAGCCTCTACAG ATCATGTAAACTTGATCACACAGCTGGAGAAGCCTCTACAG < 41bp 0.443809428832364 0.704777235333746 0.039468586 0.04008481 prediction 0.409554470667492 Functional Gain - APCS ENSG00000132703 CDS Human protein_coding chr1:159557956 chr1:159557957 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_127344 0 0 0 0 1 APCS chr1:159557891 3'AG 159557891 Downstream 67bp
chr14 97313614 97313614 1 + C T SARC 97313613 + 97313593 97313633 41 GTTCAGAAATGGATTCGTACCCGTAAGCTGAAGTACCTGGG GTTCAGAAATGGATTCGTACCTGTAAGCTGAAGTACCTGGG < 41bp 0.44878229827322 0.704769777570833 0.29106262 0.32367027 prediction 0.409539555141667 Functional Gain - VRK1 ENSG00000100749 CDS Human protein_coding chr14:97313613 chr14:97313614 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_127347 0 0 1 0 2 VRK1 chr14:97313594 3'AG 97313594 Downstream 21bp
chr14 97313614 97313614 1 + C T SARC 97313613 + 97313593 97313633 41 GTTCAGAAATGGATTCGTACCCGTAAGCTGAAGTACCTGGG GTTCAGAAATGGATTCGTACCTGTAAGCTGAAGTACCTGGG < 41bp 0.44878229827322 0.704769777570833 0.29106262 0.32367027 prediction 0.409539555141667 Functional Gain - VRK1 ENSG00000100749 CDS Human protein_coding chr14:97313613 chr14:97313614 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_127347 0 0 1 0 2 VRK1 chr14:97313681 5'GT 97313681 Upstream 68bp
chr1 118484427 118484427 1 + A G LUAD 118484424 + 118484404 118484444 41 TCCTTTCCAAAAAGGAAATTCAGAAGAAAATGGATAAGAAG TCCTTTCCAAAAAGGAAATTCAGGAGAAAATGGATAAGAAG < 41bp 0.488146297655993 0.704765338609514 0.2177622 0.3294499 prediction 0.409530677219028 Functional Gain - WDR3 ENSG00000065183 CDS Human protein_coding chr1:118484424 chr1:118484427 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_127349 0 0 1 0 1 WDR3 chr1:118484373 3'AG 118484373 Downstream 55bp
chr19 37266369 37266369 1 + C T CESC 37266368 + 37266348 37266388 41 CAAACACCCGCCACTCAAATCCGGGTGGTTACTGCAGAGTG CAAACACCCGCCACTCAAATCTGGGTGGTTACTGCAGAGTG < 41bp 0.561371177659495 0.766135223615265 0.9104605 0.8134291 prediction 0.40952809191154 Functional Gain - LOC728485 ENSG00000267260 CDS Human lincRNA chr19:37266368 chr19:37266369 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_127351 0 0 1 0 1 LOC728485 chr19:37266288 3'AG 37266288 Downstream 82bp
chr3 40442405 40442405 1 + C T COAD 40442404 + 40442384 40442424 41 GTATGGTATTGTGCTGGATGCCGGGTCTTCAAGAACCACAG GTATGGTATTGTGCTGGATGCTGGGTCTTCAAGAACCACAG < 41bp 0.587667809361442 0.792427518066755 0.81512225 0.4171535 prediction 0.409519417410626 Functional Gain - ENTPD3 ENSG00000168032 CDS Human protein_coding chr3:40442404 chr3:40442405 synonymous SNV . 0 22 hm5C_associated_SNPs_127353 0 0 0 0 2 ENTPD3 chr3:40442385 3'AG 40442385 Downstream 21bp
chr3 40442405 40442405 1 + C T COAD 40442404 + 40442384 40442424 41 GTATGGTATTGTGCTGGATGCCGGGTCTTCAAGAACCACAG GTATGGTATTGTGCTGGATGCTGGGTCTTCAAGAACCACAG < 41bp 0.587667809361442 0.792427518066755 0.81512225 0.4171535 prediction 0.409519417410626 Functional Gain - ENTPD3 ENSG00000168032 CDS Human protein_coding chr3:40442404 chr3:40442405 synonymous SNV . 0 22 hm5C_associated_SNPs_127353 0 0 0 0 2 ENTPD3 chr3:40442502 5'GT 40442502 Upstream 98bp
chr5 118835027 118835027 1 + C T SKCM 118835026 + 118835006 118835046 41 TCTTAGGCTGGAGCTATTGGCCAGAAACTCCCTCCATTTTC TCTTAGGCTGGAGCTATTGGCTAGAAACTCCCTCCATTTTC < 41bp 0.463914014853493 0.704756710693972 0.06151533 0.06302753 prediction 0.409513421387943 Functional Gain - HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118835026 chr5:118835027 stopgain 0.956 0 22 hm5C_associated_SNPs_127354 0 0 1 0 1 HSD17B4 chr5:118835012 3'AG 118835012 Downstream 16bp
chr19 42399550 42399550 1 + C T UCEC 42399549 + 42399529 42399569 41 CTGTCCCTGGACAGCCCAGACCGGGAACCAGGTGAGAGTTT CTGTCCCTGGACAGCCCAGACTGGGAACCAGGTGAGAGTTT < 41bp 0.486552507387564 0.704756104971721 0.9020987 0.41287503 prediction 0.409512209943441 Functional Gain - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42399549 chr19:42399550 nonsynonymous SNV 0.955 3 22 hm5C_associated_SNPs_127355 0 0 1 0 1 ARHGEF1 chr19:42399559 5'GT 42399559 Upstream 10bp
chr7 76916213 76916213 1 + C T COAD 76916212 + 76916192 76916232 41 CCTTCCAGGGAAAGATCTGACCGAAAAAGAAATGATCCAAA CCTTCCAGGGAAAGATCTGACTGAAAAAGAAATGATCCAAA < 41bp 0.450387807283478 0.704756044728799 0.53292906 0.46462852 prediction 0.409512089457597 Functional Gain - CCDC146 ENSG00000135205 CDS Human protein_coding chr7:76916212 chr7:76916213 synonymous SNV . 0 22 hm5C_associated_SNPs_127356 0 0 0 0 2 CCDC146 chr7:76916115 3'AG 76916115 Downstream 99bp
chr7 76916213 76916213 1 + C T COAD 76916212 + 76916192 76916232 41 CCTTCCAGGGAAAGATCTGACCGAAAAAGAAATGATCCAAA CCTTCCAGGGAAAGATCTGACTGAAAAAGAAATGATCCAAA < 41bp 0.450387807283478 0.704756044728799 0.53292906 0.46462852 prediction 0.409512089457597 Functional Gain - CCDC146 ENSG00000135205 CDS Human protein_coding chr7:76916212 chr7:76916213 synonymous SNV . 0 22 hm5C_associated_SNPs_127356 0 0 0 0 2 CCDC146 chr7:76916243 5'GT 76916243 Upstream 31bp
chrX 103357897 103357897 1 + C G rs144020839 103357896 + 103357876 103357916 41 TCCCTGGCAGGTCATCAAAGCCGAATCCGAACTTGAATTCT TCCCTGGCAGGTCATCAAAGCGGAATCCGAACTTGAATTCT < 41bp 0.40224288495467 0.704755437986626 0.32802308 0.7409656 prediction 0.409510875973253 Functional Gain - ZCCHC18 ENSG00000166707 UTR5 Human protein_coding chrX:103357896 chrX:103357897 . . 0 22 hm5C_associated_SNPs_127357 0 0 1 0 2 ZCCHC18 chrX:103357886 3'AG 103357886 Downstream 12bp
chrX 103357897 103357897 1 + C G rs144020839 103357896 + 103357876 103357916 41 TCCCTGGCAGGTCATCAAAGCCGAATCCGAACTTGAATTCT TCCCTGGCAGGTCATCAAAGCGGAATCCGAACTTGAATTCT < 41bp 0.40224288495467 0.704755437986626 0.32802308 0.7409656 prediction 0.409510875973253 Functional Gain - ZCCHC18 ENSG00000166707 UTR5 Human protein_coding chrX:103357896 chrX:103357897 . . 0 22 hm5C_associated_SNPs_127357 0 0 1 0 2 ZCCHC18 chrX:103357937 5'GT 103357937 Upstream 41bp
chr9 126776269 126776269 1 + C T UCEC 126776268 + 126776248 126776288 41 GTCCATCAGCAGTGACCGCGCCGCGCTGTGCGCCGGCTGCG GTCCATCAGCAGTGACCGCGCTGCGCTGTGCGCCGGCTGCG < 41bp 0.613111205626296 0.817865287598124 0.39697278 0.27258408 prediction 0.409508163943656 Functional Gain - LHX2 ENSG00000106689 CDS Human protein_coding chr9:126776268 chr9:126776269 synonymous SNV . 0 22 hm5C_associated_SNPs_127359 0 0 0 0 1 LHX2 chr9:126776240 3'AG 126776240 Downstream 30bp
chr15 58834832 58834832 1 + A G UCEC 58834829 + 58834809 58834849 41 GCAGTTCCATCGGTGGAACGCACAAGATTGGGAGAATCACA GCAGTTCCATCGGTGGAACGCACGAGATTGGGAGAATCACA < 41bp 0.607709466220133 0.812462690883538 0.35710108 0.42746204 prediction 0.40950644932681 Functional Gain - LIPC ENSG00000166035 CDS Human protein_coding chr15:58834829 chr15:58834832 nonsynonymous SNV 0.937 5 24 hm5C_associated_SNPs_127360 0 0 1 0 2 LIPC chr15:58834733 3'AG 58834733 Downstream 100bp
chr15 58834832 58834832 1 + A G UCEC 58834829 + 58834809 58834849 41 GCAGTTCCATCGGTGGAACGCACAAGATTGGGAGAATCACA GCAGTTCCATCGGTGGAACGCACGAGATTGGGAGAATCACA < 41bp 0.607709466220133 0.812462690883538 0.35710108 0.42746204 prediction 0.40950644932681 Functional Gain - LIPC ENSG00000166035 CDS Human protein_coding chr15:58834829 chr15:58834832 nonsynonymous SNV 0.937 5 24 hm5C_associated_SNPs_127360 0 0 1 0 2 LIPC chr15:58834850 5'GT 58834850 Upstream 19bp
chr18 12971179 12971179 1 + C T rs138459666 12971178 + 12971158 12971198 41 TGCTCATTCCCCCATGATCGCCGTAGGAAGTGATGACAGTA TGCTCATTCCCCCATGATCGCTGTAGGAAGTGATGACAGTA < 41bp 0.445687680026373 0.704751628676343 0.9126476 0.306833 prediction 0.409503257352685 Functional Gain - SEH1L ENSG00000085415 CDS Human protein_coding chr18:12971178 chr18:12971179 synonymous SNV . 0 22 hm5C_associated_SNPs_127361 0 0 1 0 2 SEH1L chr18:12971152 3'AG 12971152 Downstream 28bp
chr18 12971179 12971179 1 + C T rs138459666 12971178 + 12971158 12971198 41 TGCTCATTCCCCCATGATCGCCGTAGGAAGTGATGACAGTA TGCTCATTCCCCCATGATCGCTGTAGGAAGTGATGACAGTA < 41bp 0.445687680026373 0.704751628676343 0.9126476 0.306833 prediction 0.409503257352685 Functional Gain - SEH1L ENSG00000085415 CDS Human protein_coding chr18:12971178 chr18:12971179 synonymous SNV . 0 22 hm5C_associated_SNPs_127361 0 0 1 0 2 SEH1L chr18:12971250 5'GT 12971250 Upstream 72bp
chrX 70521702 70521702 1 + C A LUAD 70521701 + 70521681 70521721 41 GGCTGTGGGCAGCACTTTGACCCTAATACCAACCTTCCTGG GGCTGTGGGCAGCACTTTGACACTAATACCAACCTTCCTGG < 41bp 0.44891500362423 0.704750455797661 0.040258914 0.06349683 prediction 0.409500911595323 Functional Gain - ITGB1BP2 ENSG00000147166 CDS Human protein_coding chrX:70521701 chrX:70521702 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_127362 0 0 1 0 1 ITGB1BP2 chrX:70521720 5'GT 70521720 Upstream 19bp
chr9 91964831 91964831 1 + C T STAD 91964830 + 91964810 91964850 41 ACCTTCCCTAAGATCCACAGCCGCAGATTCAGGGAGTGAGT ACCTTCCCTAAGATCCACAGCTGCAGATTCAGGGAGTGAGT < 41bp 0.436219877234579 0.704748439858313 0.07346335 0.06672543 prediction 0.409496879716625 Functional Gain - SECISBP2 ENSG00000187742 CDS Human protein_coding chr9:91964830 chr9:91964831 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_127366 0 0 0 0 1 SECISBP2 chr9:91964844 5'GT 91964844 Upstream 14bp
chr19 49619590 49619590 1 + A G LUSC 49619587 + 49619567 49619607 41 GGTAGTGGAGCTACCCAAGACGGATGAGGGCCTAGGCTTCA GGTAGTGGAGCTACCCAAGACGGGTGAGGGCCTAGGCTTCA < 41bp 0.609444535565115 0.814189846032096 0.35561392 0.6114632 prediction 0.409490620933962 Functional Gain - LIN7B ENSG00000104863 CDS Human protein_coding chr19:49619587 chr19:49619590 nonsynonymous SNV 0.986 1 24 hm5C_associated_SNPs_127368 0 0 0 0 1 LIN7B chr19:49619520 3'AG 49619520 Downstream 71bp
chr17 32612882 32612882 1 + C A LIHC 32612878 + 32612858 32612898 41 CTGCTCATAGCAGCTGCCTTCAGCCCCCAGGGGCTCGCTGG CTGCTCATAGCAGCTGCCTTCAGCACCCAGGGGCTCGCTGG < 41bp 0.7312701833632 0.936015215288839 0.45735785 0.41297007 prediction 0.409490063851277 Functional Gain - CCL11 ENSG00000172156 CDS Human protein_coding chr17:32612878 chr17:32612882 nonsynonymous SNV 0.014 0 25 hm5C_associated_SNPs_127369 0 0 0 0 1 CCL11 chr17:32612903 5'GT 32612903 Upstream 22bp
chr5 162905726 162905726 1 + T A UCEC 162905722 + 162905702 162905742 41 ACTGGAGAAAAGTAGTGCTGCTCATACCCAGGCCACCCTGC ACTGGAGAAAAGTAGTGCTGCTCAAACCCAGGCCACCCTGC < 41bp 0.356358158134147 0.70474318448935 0.07163933 0.14482239 prediction 0.4094863689787 Functional Gain - HMMR ENSG00000072571 CDS Human protein_coding chr5:162905722 chr5:162905726 nonsynonymous SNV 0.003 2 25 hm5C_associated_SNPs_127370 0 0 1 0 2 HMMR chr5:162905690 3'AG 162905690 Downstream 37bp
chr5 162905726 162905726 1 + T A UCEC 162905722 + 162905702 162905742 41 ACTGGAGAAAAGTAGTGCTGCTCATACCCAGGCCACCCTGC ACTGGAGAAAAGTAGTGCTGCTCAAACCCAGGCCACCCTGC < 41bp 0.356358158134147 0.70474318448935 0.07163933 0.14482239 prediction 0.4094863689787 Functional Gain - HMMR ENSG00000072571 CDS Human protein_coding chr5:162905722 chr5:162905726 nonsynonymous SNV 0.003 2 25 hm5C_associated_SNPs_127370 0 0 1 0 2 HMMR chr5:162905806 5'GT 162905806 Upstream 81bp
chr20 31017811 31017811 1 + C T BLCA 31017810 + 31017790 31017830 41 CGTGGCCAGGCCGAGGTCACCCAGGACCCTGCCCCGCTCCT CGTGGCCAGGCCGAGGTCACCTAGGACCCTGCCCCGCTCCT < 41bp 0.611240087016685 0.815980485652125 0.75452054 0.8516188 prediction 0.40948079727088 Functional Gain - ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31017810 chr20:31017811 stopgain 0.992 0 22 hm5C_associated_SNPs_127373 0 0 1 0 1 ASXL1 chr20:31017856 5'GT 31017856 Upstream 46bp
chr16 2880299 2880299 1 + C A rs17136080 2880298 + 2880278 2880318 41 AAAGGCGATGTGGAGGGTGCCCGGCACAACCAGACGCCCAG AAAGGCGATGTGGAGGGTGCCAGGCACAACCAGACGCCCAG < 41bp 0.622975492156434 0.827713485858342 0.19268984 0.7295929 prediction 0.409475987403816 Functional Gain - ZG16B ENSG00000162078 CDS Human protein_coding chr16:2880298 chr16:2880299 synonymous SNV . 0 22 hm5C_associated_SNPs_127374 0 0 0 0 1 ZG16B chr16:2880329 5'GT 2880329 Upstream 31bp
chr21 43711712 43711712 1 + C T SKCM 43711711 + 43711691 43711731 41 CGCGCTGGGCACCATGACCTCCCTGGTGGCACAGTCCCTGG CGCGCTGGGCACCATGACCTCTCTGGTGGCACAGTCCCTGG < 41bp 0.639520109032859 0.844257091001628 0.5905701 0.8225633 prediction 0.409473963937538 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43711711 chr21:43711712 synonymous SNV . 0 22 hm5C_associated_SNPs_127375 0 0 0 0 1 ABCG1 chr21:43711766 5'GT 43711766 Upstream 55bp
chr17 7480985 7480985 1 + C G rs143683973 7480984 + 7480964 7481004 41 GAGGAAGGTGGACTGGCTCACCGAGAAGATGCATGCTCGAG GAGGAAGGTGGACTGGCTCACGGAGAAGATGCATGCTCGAG < 41bp 0.376096922998143 0.704734206206598 0.26859245 0.9126291 prediction 0.409468412413196 Functional Gain - EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7480984 chr17:7480985 synonymous SNV . 0 22 hm5C_associated_SNPs_127376 0 0 1 0 2 EIF4A1 chr17:7480887 3'AG 7480887 Downstream 99bp
chr17 7480985 7480985 1 + C G rs143683973 7480984 + 7480964 7481004 41 GAGGAAGGTGGACTGGCTCACCGAGAAGATGCATGCTCGAG GAGGAAGGTGGACTGGCTCACGGAGAAGATGCATGCTCGAG < 41bp 0.376096922998143 0.704734206206598 0.26859245 0.9126291 prediction 0.409468412413196 Functional Gain - EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7480984 chr17:7480985 synonymous SNV . 0 22 hm5C_associated_SNPs_127376 0 0 1 0 2 EIF4A1 chr17:7481024 5'GT 7481024 Upstream 40bp
chr2 135630107 135630107 1 + C A LUSC 135630106 + 135630086 135630126 41 ATGCGCCCAGATCTGTGTGCCCAGGACAACCCCATGAACCC ATGCGCCCAGATCTGTGTGCCAAGGACAACCCCATGAACCC < 41bp 0.438373145218737 0.704734075173439 0.14321595 0.22327104 prediction 0.409468150346878 Functional Gain - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135630106 chr2:135630107 nonsynonymous SNV 0.999 0 22 hm5C_associated_SNPs_127377 0 0 1 0 1 ACMSD chr2:135630039 3'AG 135630039 Downstream 69bp
chr12 51634755 51634755 1 + T C UCEC 51634752 + 51634732 51634772 41 GTATCTTCCCATGGCCCAGTCTGTGGCTGTTGGGCCTTTAG GTATCTTCCCATGGCCCAGTCTGCGGCTGTTGGGCCTTTAG < 41bp 0.568051294121366 0.772782911860574 0.14295113 0.19125324 prediction 0.409463235478416 Functional Gain - DAZAP2 ENSG00000183283 CDS Human protein_coding chr12:51634752 chr12:51634755 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_127381 0 0 1 0 1 DAZAP2 chr12:51634751 3'AG 51634751 Downstream 5bp
chr19 12783866 12783866 1 + C T COAD 12783865 + 12783845 12783885 41 AGCCGGGATGGGCAGTGCACCCTGGTGTCCAGCCTGGACTC AGCCGGGATGGGCAGTGCACCTTGGTGTCCAGCCTGGACTC < 41bp 0.622987652990239 0.827715640109394 0.15519464 0.080830395 prediction 0.409455974238311 Functional Gain - WDR83 ENSG00000123154 CDS Human protein_coding chr19:12783865 chr19:12783866 synonymous SNV . 0 22 hm5C_associated_SNPs_127383 0 0 1 0 2 WDR83 chr19:12783822 3'AG 12783822 Downstream 45bp
chr19 12783866 12783866 1 + C T COAD 12783865 + 12783845 12783885 41 AGCCGGGATGGGCAGTGCACCCTGGTGTCCAGCCTGGACTC AGCCGGGATGGGCAGTGCACCTTGGTGTCCAGCCTGGACTC < 41bp 0.622987652990239 0.827715640109394 0.15519464 0.080830395 prediction 0.409455974238311 Functional Gain - WDR83 ENSG00000123154 CDS Human protein_coding chr19:12783865 chr19:12783866 synonymous SNV . 0 22 hm5C_associated_SNPs_127383 0 0 1 0 2 WDR83 chr19:12783930 5'GT 12783930 Upstream 65bp
chr20 333907 333907 1 + C T HNSC 333906 + 333886 333926 41 GCTGGGTGTGGCGGCTCTGACCACTGGCTATGCAGTGCCCC GCTGGGTGTGGCGGCTCTGACTACTGGCTATGCAGTGCCCC < 41bp 0.455366571293473 0.704727453318024 0.072996646 0.09598005 prediction 0.409454906636048 Functional Gain - NRSN2 ENSG00000125841 CDS Human protein_coding chr20:333906 chr20:333907 synonymous SNV . 0 22 hm5C_associated_SNPs_127384 0 0 1 1 1 NRSN2 chr20:333854 3'AG 333854 Downstream 54bp
chr3 52236580 52236580 1 + C G rs145553963 52236579 + 52236559 52236599 41 CTGATGGATCCCAGCAGAGTCCAGATGGCACACAGCTTCCG CTGATGGATCCCAGCAGAGTCGAGATGGCACACAGCTTCCG < 41bp 0.694287930712705 0.899009042904123 0.13141218 0.36093992 prediction 0.409442224382835 Functional Gain - ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52236579 chr3:52236580 nonsynonymous SNV 0.989 1 22 hm5C_associated_SNPs_127386 0 0 0 0 1 ALAS1 chr3:52236523 3'AG 52236523 Downstream 58bp
chr1 205033534 205033534 1 + C A LUAD 205033530 + 205033510 205033550 41 GAGAGATCCTTATCCCCTGCCAGCCCCGGGCAGCTCCAAAG GAGAGATCCTTATCCCCTGCCAGCACCGGGCAGCTCCAAAG < 41bp 0.283583703595234 0.704716983869095 0.27625412 0.28644294 prediction 0.409433967738191 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205033530 chr1:205033534 nonsynonymous SNV 0.731 3 25 hm5C_associated_SNPs_127388 0 0 0 0 2 CNTN2 chr1:205033450 3'AG 205033450 Downstream 85bp
chr1 205033534 205033534 1 + C A LUAD 205033530 + 205033510 205033550 41 GAGAGATCCTTATCCCCTGCCAGCCCCGGGCAGCTCCAAAG GAGAGATCCTTATCCCCTGCCAGCACCGGGCAGCTCCAAAG < 41bp 0.283583703595234 0.704716983869095 0.27625412 0.28644294 prediction 0.409433967738191 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205033530 chr1:205033534 nonsynonymous SNV 0.731 3 25 hm5C_associated_SNPs_127388 0 0 0 0 2 CNTN2 chr1:205033600 5'GT 205033600 Upstream 67bp
chr16 72142715 72142715 1 + T C UCEC 72142713 + 72142693 72142733 41 CCCTAGGGAATCGGGGAGTACGTGAACATCCGCACAGGGAT CCCTAGGGAATCGGGGAGTACGCGAACATCCGCACAGGGAT < 41bp 0.660490775259079 0.865206768293835 0.76327044 0.8176786 prediction 0.409431986069512 Functional Gain - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72142713 chr16:72142715 nonsynonymous SNV 0.986 2 23 hm5C_associated_SNPs_127390 0 0 1 0 1 DHX38 chr16:72142699 3'AG 72142699 Downstream 17bp
chr2 241512562 241512562 1 + C A rs532312964 241512561 + 241512541 241512581 41 GCAGGTGCTGATGAGTGCCACCCGGAGTGCATACATGGAGG GCAGGTGCTGATGAGTGCCACACGGAGTGCATACATGGAGG < 41bp 0.439603257839887 0.704713919428502 0.34546775 0.3760042 prediction 0.409427838857004 Functional Gain - RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241512561 chr2:241512562 synonymous SNV . 0 22 hm5C_associated_SNPs_127392 0 0 1 0 1 RNPEPL1 chr2:241512527 3'AG 241512527 Downstream 36bp
chr19 15220535 15220535 1 + C A rs565941164 15220534 + 15220514 15220554 41 GGTGCAGCCCCCGCCAGCCCCCCAACCAAAGCCTCCCGCAC GGTGCAGCCCCCGCCAGCCCCACAACCAAAGCCTCCCGCAC < 41bp 0.471186916302321 0.704704731025723 0.16154182 0.11474174 prediction 0.409409462051445 Functional Gain - SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15220534 chr19:15220535 nonsynonymous SNV 0.821 2 22 hm5C_associated_SNPs_127395 0 0 1 0 1 SYDE1 chr19:15220515 3'AG 15220515 Downstream 21bp
chr16 83378587 83378587 1 + C A LUAD 83378583 + 83378563 83378603 41 TTTCGGGAAGGCCCCTACATCGGCCACGTCATGGAAGGGTC TTTCGGGAAGGCCCCTACATCGGCAACGTCATGGAAGGGTC < 41bp 0.443310356342377 0.704704362466903 0.32344812 0.54698646 prediction 0.409408724933806 Functional Gain - CDH13 ENSG00000140945 CDS Human protein_coding chr16:83378583 chr16:83378587 nonsynonymous SNV 0.915 0 25 hm5C_associated_SNPs_127396 0 0 0 0 1 CDH13 chr16:83378611 5'GT 83378611 Upstream 25bp
chr3 140282886 140282886 1 + C A LUAD 140282885 + 140282865 140282905 41 GCCATGGGTGTGTACCGGGTCCGGATCGCCCACCAGCACTT GCCATGGGTGTGTACCGGGTCAGGATCGCCCACCAGCACTT < 41bp 0.587570098365768 0.79227338415578 0.43038836 0.7035745 prediction 0.409406571580022 Functional Gain - CLSTN2 ENSG00000158258 CDS Human protein_coding chr3:140282885 chr3:140282886 synonymous SNV . 0 22 hm5C_associated_SNPs_127398 0 0 0 0 1 CLSTN2 chr3:140282803 3'AG 140282803 Downstream 84bp
chr20 45702824 45702824 1 + C T SKCM 45702823 + 45702803 45702843 41 CCTTCCTACCCCGGCTTCCCCCAGAGCCAGTACCCCCAGTA CCTTCCTACCCCGGCTTCCCCTAGAGCCAGTACCCCCAGTA < 41bp 0.628000976754744 0.83269491524342 0.49365252 0.40340897 prediction 0.409387876977354 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45702823 chr20:45702824 stopgain 0.989 1 22 hm5C_associated_SNPs_127402 0 0 0 0 1 EYA2 chr20:45702797 3'AG 45702797 Downstream 28bp
chr10 114910829 114910829 1 + A G rs201875922 114910826 + 114910806 114910846 41 ATTCCGCATCCGGCCATAGTCACACCAACAGTCAAACAGGA ATTCCGCATCCGGCCATAGTCACGCCAACAGTCAAACAGGA < 41bp 0.500548364287595 0.705240759821794 0.32393032 0.40540904 prediction 0.4093847910684 Functional Gain - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114910826 chr10:114910829 synonymous SNV . 0 24 hm5C_associated_SNPs_127404 0 0 1 0 3 TCF7L2 chr10:114910742 3'AG 114910742 Downstream 88bp
chr10 114910829 114910829 1 + A G rs201875922 114910826 + 114910806 114910846 41 ATTCCGCATCCGGCCATAGTCACACCAACAGTCAAACAGGA ATTCCGCATCCGGCCATAGTCACGCCAACAGTCAAACAGGA < 41bp 0.500548364287595 0.705240759821794 0.32393032 0.40540904 prediction 0.4093847910684 Functional Gain - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114910826 chr10:114910829 synonymous SNV . 0 24 hm5C_associated_SNPs_127404 0 0 1 0 3 TCF7L2 chr10:114910757 3'AG 114910757 Downstream 73bp
chr10 114910829 114910829 1 + A G rs201875922 114910826 + 114910806 114910846 41 ATTCCGCATCCGGCCATAGTCACACCAACAGTCAAACAGGA ATTCCGCATCCGGCCATAGTCACGCCAACAGTCAAACAGGA < 41bp 0.500548364287595 0.705240759821794 0.32393032 0.40540904 prediction 0.4093847910684 Functional Gain - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114910826 chr10:114910829 synonymous SNV . 0 24 hm5C_associated_SNPs_127404 0 0 1 0 3 TCF7L2 chr10:114910882 5'GT 114910882 Upstream 54bp
chr1 18958105 18958105 1 + C G rs529809505 18958102 + 18958082 18958122 41 CCCGGCGTGCGCAAGAATGGCGGCCCTTCCCGGCACGGTAC CCCGGCGTGCGCAAGAATGGCGGGCCTTCCCGGCACGGTAC < 41bp 0.536637763410558 0.741321965819183 0.24174348 0.89875406 prediction 0.409368404817251 Functional Gain - PAX7 ENSG00000009709 CDS Human protein_coding chr1:18958102 chr1:18958105 nonsynonymous SNV 0.988 2 24 hm5C_associated_SNPs_127407 0 0 0 0 1 PAX7 chr1:18958182 5'GT 18958182 Upstream 78bp
chr20 56137200 56137200 1 + A G LUAD 56137197 + 56137177 56137217 41 CGGTTATCGTCACCCAAGAGCAAAGAGACACAGTGCCCATC CGGTTATCGTCACCCAAGAGCAAGGAGACACAGTGCCCATC < 41bp 0.446974515949826 0.704683047184139 0.17411453 0.68936324 prediction 0.409366094368278 Functional Gain - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56137197 chr20:56137200 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_127408 0 0 0 0 1 PCK1 chr20:56137127 3'AG 56137127 Downstream 74bp
chr11 32605400 32605400 1 + C A rs113415019 32605396 + 32605376 32605416 41 CCTTTTCCGGTCGGCGTGGTCTTGCGAGTGGAGTGTCCGCT CCTTTTCCGGTCGGCGTGGTCTTGAGAGTGGAGTGTCCGCT < 41bp 0.678650457898798 0.883330782147937 0.35436916 0.52910846 prediction 0.409360648498278 Functional Gain - EIF3M ENSG00000149100 UTR5 Human protein_coding chr11:32605396 chr11:32605400 . . 0 25 hm5C_associated_SNPs_127409 0 0 1 0 1 EIF3M chr11:32605475 5'GT 32605475 Upstream 76bp
chr12 4705429 4705429 1 + A G UCEC 4705426 + 4705406 4705446 41 AAAACAATGAGCTGGTGGCCCTGAAAATCATCAGGAACAAG AAAACAATGAGCTGGTGGCCCTGGAAATCATCAGGAACAAG < 41bp 0.575910787286773 0.780590435246886 0.14220744 0.22584668 prediction 0.409359295920225 Functional Gain - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4705426 chr12:4705429 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_127410 0 0 1 0 1 DYRK4 chr12:4705451 5'GT 4705451 Upstream 23bp
chr11 12241764 12241764 1 + A G LIHC 12241761 + 12241741 12241781 41 TCCCCAGGACTACATCGACACAGAGATGCTGCTGTGTGCGG TCCCCAGGACTACATCGACACAGGGATGCTGCTGTGTGCGG < 41bp 0.46294738140954 0.70467684257487 0.44431156 0.86563814 prediction 0.40935368514974 Functional Gain - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12241761 chr11:12241764 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_127412 0 0 1 0 1 MICAL2 chr11:12241748 3'AG 12241748 Downstream 17bp
chr16 84229878 84229878 1 + A G UCEC 84229875 + 84229855 84229895 41 GGGCCCCCGGTGGCCCCTTCCGAACCCACCCCTGACACCTG GGGCCCCCGGTGGCCCCTTCCGAGCCCACCCCTGACACCTG < 41bp 0.44799027463693 0.704666622467511 0.40751648 0.9236421 prediction 0.409333244935023 Functional Gain - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84229875 chr16:84229878 synonymous SNV . 0 24 hm5C_associated_SNPs_127414 0 0 0 0 1 ADAD2 chr16:84229976 5'GT 84229976 Upstream 99bp
chrX 110970894 110970894 1 + T C COAD 110970891 + 110970871 110970911 41 GTTGTGTGAATAAGGAGTCCCAGTATGGATTTACCCCAGGG GTTGTGTGAATAAGGAGTCCCAGCATGGATTTACCCCAGGG < 41bp 0.551369656807494 0.756035416552441 0.037053943 0.023123443 prediction 0.409331519489894 Functional Gain - ALG13 ENSG00000101901 CDS Human protein_coding chrX:110970891 chrX:110970894 nonsynonymous SNV 0.685 4 24 hm5C_associated_SNPs_127415 0 0 1 0 1 ALG13 chrX:110970842 3'AG 110970842 Downstream 53bp
chr22 31608400 31608400 1 + C T rs145674338 31608399 + 31608379 31608419 41 CCGCGCTCCCGGGACCATGTCCGCGCTGGCGGGTAAGGAAG CCGCGCTCCCGGGACCATGTCTGCGCTGGCGGGTAAGGAAG < 41bp 0.568852211069958 0.773517107543849 0.4749969 0.32359326 prediction 0.409329792947781 Functional Gain - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31608399 chr22:31608400 synonymous SNV . 0 22 hm5C_associated_SNPs_127416 0 0 1 0 1 LIMK2 chr22:31608410 5'GT 31608410 Upstream 11bp
chr1 156563852 156563852 1 + C T rs942963 156563851 + 156563831 156563871 41 CCTGCCACCCTACCCTGACACCGAGTGTGTCTATCGTCTGC CCTGCCACCCTACCCTGACACTGAGTGTGTCTATCGTCTGC < 41bp 0.459164850380257 0.704664322539546 0.10892877 0.03532064 prediction 0.409328645079092 Functional Gain - NAXE ENSG00000163382 CDS Human protein_coding chr1:156563851 chr1:156563852 synonymous SNV . 0 22 hm5C_associated_SNPs_127418 0 0 1 0 1 NAXE chr1:156563882 5'GT 156563882 Upstream 31bp
chr20 32951147 32951147 1 + C G rs563046157 32951146 + 32951126 32951166 41 ACTGAGGAGTCGCCGCCGCCCCGAGTCCCGGTAAACCCCCG ACTGAGGAGTCGCCGCCGCCCGGAGTCCCGGTAAACCCCCG < 41bp 0.648288139819223 0.852951414962715 0.21714458 0.69673556 prediction 0.409326550286985 Functional Gain - ITCH ENSG00000078747 UTR5 Human protein_coding chr20:32951146 chr20:32951147 . . 0 22 hm5C_associated_SNPs_127421 0 0 1 0 1 ITCH chr20:32951155 5'GT 32951155 Upstream 9bp
chr10 74684033 74684033 1 + C A LUSC 74684029 + 74684009 74684049 41 CCAGCAACCTCGTGACAGGTCTACCCAAGCAGACCCCGGGG CCAGCAACCTCGTGACAGGTCTACACAAGCAGACCCCGGGG < 41bp 0.287894410884927 0.704661996331887 0.22375986 0.6423416 prediction 0.409323992663774 Functional Gain - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74684029 chr10:74684033 nonsynonymous SNV 0.995 5 25 hm5C_associated_SNPs_127423 0 0 0 0 1 OIT3 chr10:74683987 3'AG 74683987 Downstream 47bp
chr22 38453534 38453534 1 + C G rs373471158 38453533 + 38453513 38453553 41 GCTCCCCAGGGCCTGGAGACCCGTGGGGCGGACTCTGGGAT GCTCCCCAGGGCCTGGAGACCGGTGGGGCGGACTCTGGGAT < 41bp 0.638212827709201 0.842871817862513 0.88719326 0.90342134 prediction 0.409317980306623 Functional Gain - PICK1 ENSG00000233739 ncRNA_intronic Human antisense chr22:38453533 chr22:38453534 . . 0 22 hm5C_associated_SNPs_127425 0 0 1 0 1 PICK1 chr22:38453594 5'GT 38453594 Upstream 61bp
chr3 178546107 178546107 1 + C T UCEC 178546106 + 178546086 178546126 41 GTACGTTAACCTGACTTCTTCCGGGGAAAAGCTCCTCCTCT GTACGTTAACCTGACTTCTTCTGGGGAAAAGCTCCTCCTCT < 41bp 0.592451207125503 0.797108585599868 0.95675504 0.93315315 prediction 0.40931475694873 Functional Gain - KCNMB2 ENSG00000197584 CDS Human protein_coding chr3:178546106 chr3:178546107 synonymous SNV . 0 22 hm5C_associated_SNPs_127426 0 0 0 0 1 KCNMB2 chr3:178546161 5'GT 178546161 Upstream 55bp
chr1 167742573 167742573 1 + T C LUSC 167742570 + 167742550 167742590 41 AGCATGATTCTGGCTGTCCTCTATAGAAGGAAAAACTCTAA AGCATGATTCTGGCTGTCCTCTACAGAAGGAAAAACTCTAA < 41bp 0.577105912172836 0.781759744872352 0.123360306 0.31730884 prediction 0.409307665399032 Functional Gain - MPZL1 ENSG00000197965 CDS Human protein_coding chr1:167742570 chr1:167742573 synonymous SNV . 0 24 hm5C_associated_SNPs_127428 0 0 1 2 1 MPZL1 chr1:167742605 5'GT 167742605 Upstream 33bp
chr1 26517884 26517884 1 + T C UCEC 26517882 + 26517862 26517902 41 CTGCTGCTGGTGATCAATGCCATCACCATCGCTCTCCGTAC CTGCTGCTGGTGATCAATGCCACCACCATCGCTCTCCGTAC < 41bp 0.673616735338226 0.878269153377845 0.15212733 0.13059548 prediction 0.409304836079237 Functional Gain - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26517882 chr1:26517884 nonsynonymous SNV 0.873 3 23 hm5C_associated_SNPs_127429 0 0 0 0 1 CATSPER4 chr1:26517921 5'GT 26517921 Upstream 38bp
chr19 5770977 5770977 1 + C T OV 5770976 + 5770956 5770996 41 GAATTCTACGACCCCGGCTTCCAGGGGCAGCAGTCCTCCGA GAATTCTACGACCCCGGCTTCTAGGGGCAGCAGTCCTCCGA < 41bp 0.462490507738651 0.704649690201652 0.92335165 0.79652536 prediction 0.409299380403305 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5770976 chr19:5770977 stopgain 0.007 0 22 hm5C_associated_SNPs_127431 0 0 0 0 1 CATSPERD chr19:5770955 3'AG 5770955 Downstream 23bp
chr12 101674945 101674945 1 + C A LIHC 101674944 + 101674924 101674964 41 GTTAATATTGATATTATTCACCGGATTGATAGAACTGCAAG GTTAATATTGATATTATTCACAGGATTGATAGAACTGCAAG < 41bp 0.462156288033321 0.704649469123977 0.5313442 0.86734366 prediction 0.409298938247953 Functional Gain - UTP20 ENSG00000120800 CDS Human protein_coding chr12:101674944 chr12:101674945 synonymous SNV . 0 22 hm5C_associated_SNPs_127432 0 0 1 0 2 UTP20 chr12:101674894 3'AG 101674894 Downstream 52bp
chr12 101674945 101674945 1 + C A LIHC 101674944 + 101674924 101674964 41 GTTAATATTGATATTATTCACCGGATTGATAGAACTGCAAG GTTAATATTGATATTATTCACAGGATTGATAGAACTGCAAG < 41bp 0.462156288033321 0.704649469123977 0.5313442 0.86734366 prediction 0.409298938247953 Functional Gain - UTP20 ENSG00000120800 CDS Human protein_coding chr12:101674944 chr12:101674945 synonymous SNV . 0 22 hm5C_associated_SNPs_127432 0 0 1 0 2 UTP20 chr12:101674974 5'GT 101674974 Upstream 30bp
chr1 40947462 40947462 1 + T A BRCA 40947460 + 40947440 40947480 41 CTGTCTCAGGATGCTGAGGACGTAAAGACCCAGAGAGAAAG CTGTCTCAGGATGCTGAGGACGAAAAGACCCAGAGAGAAAG < 41bp 0.500615355495571 0.70525854899884 0.43517062 0.34511665 prediction 0.409286387006537 Functional Gain - ZFP69 ENSG00000187815 CDS Human protein_coding chr1:40947460 chr1:40947462 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_127437 0 0 0 0 2 ZFP69 chr1:40947435 3'AG 40947435 Downstream 28bp
chr1 40947462 40947462 1 + T A BRCA 40947460 + 40947440 40947480 41 CTGTCTCAGGATGCTGAGGACGTAAAGACCCAGAGAGAAAG CTGTCTCAGGATGCTGAGGACGAAAAGACCCAGAGAGAAAG < 41bp 0.500615355495571 0.70525854899884 0.43517062 0.34511665 prediction 0.409286387006537 Functional Gain - ZFP69 ENSG00000187815 CDS Human protein_coding chr1:40947460 chr1:40947462 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_127437 0 0 0 0 2 ZFP69 chr1:40947526 5'GT 40947526 Upstream 65bp
chr19 50391759 50391759 1 + C T SKCM 50391758 + 50391738 50391778 41 AGCCCCTCGCCCACCGCCTCCCCGCTGCCTCTGTCGCCCAC AGCCCCTCGCCCACCGCCTCCTCGCTGCCTCTGTCGCCCAC < 41bp 0.465810673716831 0.704638355676021 0.20483005 0.35665548 prediction 0.409276711352041 Functional Gain - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50391758 chr19:50391759 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_127439 0 0 1 0 1 TBC1D17 chr19:50391681 3'AG 50391681 Downstream 79bp
chr21 46363697 46363697 1 + C A UCEC 46363693 + 46363673 46363713 41 GCTGGACGTGAGGAGTGTCACTTCCGTCAGGAGAGGTGAGG GCTGGACGTGAGGAGTGTCACTTCAGTCAGGAGAGGTGAGG < 41bp 0.284585366449952 0.704636896578364 0.100061595 0.19186041 prediction 0.409273793156729 Functional Gain - FAM207A ENSG00000160256 CDS Human protein_coding chr21:46363693 chr21:46363697 synonymous SNV . 0 25 hm5C_associated_SNPs_127440 0 0 1 0 3 FAM207A chr21:46363599 3'AG 46363599 Downstream 99bp
chr21 46363697 46363697 1 + C A UCEC 46363693 + 46363673 46363713 41 GCTGGACGTGAGGAGTGTCACTTCCGTCAGGAGAGGTGAGG GCTGGACGTGAGGAGTGTCACTTCAGTCAGGAGAGGTGAGG < 41bp 0.284585366449952 0.704636896578364 0.100061595 0.19186041 prediction 0.409273793156729 Functional Gain - FAM207A ENSG00000160256 CDS Human protein_coding chr21:46363693 chr21:46363697 synonymous SNV . 0 25 hm5C_associated_SNPs_127440 0 0 1 0 3 FAM207A chr21:46363707 5'GT 46363707 Upstream 11bp
chr21 46363697 46363697 1 + C A UCEC 46363693 + 46363673 46363713 41 GCTGGACGTGAGGAGTGTCACTTCCGTCAGGAGAGGTGAGG GCTGGACGTGAGGAGTGTCACTTCAGTCAGGAGAGGTGAGG < 41bp 0.284585366449952 0.704636896578364 0.100061595 0.19186041 prediction 0.409273793156729 Functional Gain - FAM207A ENSG00000160256 CDS Human protein_coding chr21:46363693 chr21:46363697 synonymous SNV . 0 25 hm5C_associated_SNPs_127440 0 0 1 0 3 FAM207A chr21:46363752 5'GT 46363752 Upstream 56bp
chr20 47557765 47557765 1 + A G UCEC 47557762 + 47557742 47557782 41 TTAAAGCAGAAATAGAAAAGCAGAGGTAAGCTATAGCACTA TTAAAGCAGAAATAGAAAAGCAGGGGTAAGCTATAGCACTA < 41bp 0.480411623008049 0.704633713206688 0.77124596 0.9276997 prediction 0.409267426413377 Functional Gain - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47557762 chr20:47557765 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_127441 0 0 1 0 2 ARFGEF2 chr20:47557736 3'AG 47557736 Downstream 30bp
chr20 47557765 47557765 1 + A G UCEC 47557762 + 47557742 47557782 41 TTAAAGCAGAAATAGAAAAGCAGAGGTAAGCTATAGCACTA TTAAAGCAGAAATAGAAAAGCAGGGGTAAGCTATAGCACTA < 41bp 0.480411623008049 0.704633713206688 0.77124596 0.9276997 prediction 0.409267426413377 Functional Gain - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47557762 chr20:47557765 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_127441 0 0 1 0 2 ARFGEF2 chr20:47557766 5'GT 47557766 Upstream 2bp
chr1 1225898 1225898 1 + C G CESC 1225897 + 1225877 1225917 41 TACCAGGACCTGGAGACCCACCGGCTCCCCTGTACCTCCCG TACCAGGACCTGGAGACCCACGGGCTCCCCTGTACCTCCCG < 41bp 0.374823574955491 0.704632736821081 0.20678154 0.8981813 prediction 0.409265473642162 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1225897 chr1:1225898 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_127442 0 0 0 0 2 SCNN1D chr1:1225857 3'AG 1225857 Downstream 42bp
chr1 1225898 1225898 1 + C G CESC 1225897 + 1225877 1225917 41 TACCAGGACCTGGAGACCCACCGGCTCCCCTGTACCTCCCG TACCAGGACCTGGAGACCCACGGGCTCCCCTGTACCTCCCG < 41bp 0.374823574955491 0.704632736821081 0.20678154 0.8981813 prediction 0.409265473642162 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1225897 chr1:1225898 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_127442 0 0 0 0 2 SCNN1D chr1:1225935 5'GT 1225935 Upstream 38bp
chr19 46181375 46181375 1 + C T COAD 46181374 + 46181354 46181394 41 GCTCCACGCTGACGCTGGTGCCCCTGCTGGGTGTCCACGAG GCTCCACGCTGACGCTGGTGCTCCTGCTGGGTGTCCACGAG < 41bp 0.438458316662565 0.70462909148766 0.22979206 0.41705188 prediction 0.40925818297532 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46181374 chr19:46181375 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_127443 0 0 0 0 1 GIPR chr19:46181346 3'AG 46181346 Downstream 30bp
chr3 38565469 38565469 1 + C T UCEC 38565468 + 38565448 38565488 41 CCGCAGAAGCTCAGTATCTACCGAACCACTGGCGCTAGGGG CCGCAGAAGCTCAGTATCTACTGAACCACTGGCGCTAGGGG < 41bp 0.61248670361578 0.817109448723011 0.32142952 0.122045904 prediction 0.409245490214462 Functional Gain - EXOG ENSG00000157036 CDS Human protein_coding chr3:38565468 chr3:38565469 synonymous SNV . 0 22 hm5C_associated_SNPs_127445 0 0 1 0 1 EXOG chr3:38565392 3'AG 38565392 Downstream 78bp
chr11 126277179 126277179 1 + T G UCEC 126277175 + 126277155 126277195 41 GGGATCAGCCCATCTTCCTGCGGCTTGAGGATTATTTCTGG GGGATCAGCCCATCTTCCTGCGGCGTGAGGATTATTTCTGG < 41bp 0.556081651578106 0.760703480715411 0.78197783 0.9057492 prediction 0.40924365827461 Functional Gain - ST3GAL4 ENSG00000110080 CDS Human protein_coding chr11:126277175 chr11:126277179 nonsynonymous SNV 0.994 3 25 hm5C_associated_SNPs_127447 0 0 0 0 2 ST3GAL4 chr11:126277147 3'AG 126277147 Downstream 33bp
chr11 126277179 126277179 1 + T G UCEC 126277175 + 126277155 126277195 41 GGGATCAGCCCATCTTCCTGCGGCTTGAGGATTATTTCTGG GGGATCAGCCCATCTTCCTGCGGCGTGAGGATTATTTCTGG < 41bp 0.556081651578106 0.760703480715411 0.78197783 0.9057492 prediction 0.40924365827461 Functional Gain - ST3GAL4 ENSG00000110080 CDS Human protein_coding chr11:126277175 chr11:126277179 nonsynonymous SNV 0.994 3 25 hm5C_associated_SNPs_127447 0 0 0 0 2 ST3GAL4 chr11:126277244 5'GT 126277244 Upstream 66bp
chr11 130332481 130332481 1 + C A LUAD 130332477 + 130332457 130332497 41 TACACCCTGAGCCAGCAGTGCGAGCTGGCTTTTGGCGTGGG TACACCCTGAGCCAGCAGTGCGAGATGGCTTTTGGCGTGGG < 41bp 0.284609249694177 0.704619047540816 0.43496436 0.83399403 prediction 0.409238095081632 Functional Gain - ADAMTS15 ENSG00000166106 CDS Human protein_coding chr11:130332477 chr11:130332481 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_127448 0 0 1 0 1 ADAMTS15 chr11:130332392 3'AG 130332392 Downstream 90bp
chr1 22927919 22927919 1 + T C UCEC 22927916 + 22927896 22927936 41 GGCCGGTACCGAGACCACTTCGCTGCGGGCGGATACTCCTC GGCCGGTACCGAGACCACTTCGCCGCGGGCGGATACTCCTC < 41bp 0.488608822048285 0.704616912977855 0.5675315 0.7796455 prediction 0.409233825955709 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22927916 chr1:22927919 synonymous SNV . 0 24 hm5C_associated_SNPs_127449 0 0 0 0 1 EPHA8 chr1:22927966 5'GT 22927966 Upstream 48bp
chr2 38177596 38177596 1 - A G rs112462342 38177598 - 38177578 38177618 41 CAAGCTGCATGTGGAGTTAACATGGCAATAACACAGAATGT CAAGCTGCATGTGGAGTTAACACGGCAATAACACAGAATGT < 41bp 0.476041957038113 0.704613428134312 0.4239708 0.52453953 prediction 0.409226856268623 Functional Gain - RMDN2-AS1 ENSG00000235848 ncRNA_exonic Human protein_coding chr2:38177598 chr2:38177596 . . 0 23 hm5C_associated_SNPs_127450 0 0 0 0 1 RMDN2-AS1 chr2:38177680 3'AG 38177680 Downstream 85bp
chr2 133403798 133403798 1 - G A COAD 133403799 - 133403779 133403819 41 GGCCTGTCTCATCGCCTCTGCCGGGTACCAGTCCTTCTGCT GGCCTGTCTCATCGCCTCTGCTGGGTACCAGTCCTTCTGCT < 41bp 0.468432708669246 0.704609540990585 0.78999436 0.49460393 prediction 0.409219081981169 Functional Gain - LYPD1 ENSG00000150551 CDS Human protein_coding chr2:133403799 chr2:133403798 synonymous SNV . 0 22 hm5C_associated_SNPs_127452 0 0 1 0 1 LYPD1 chr2:133403853 3'AG 133403853 Downstream 56bp
chr19 14185243 14185243 1 + C T UCEC 14185242 + 14185222 14185262 41 TTGGTGGTGATCTGGCCCCCCCGCAGAAAGGTCTCGGAGAA TTGGTGGTGATCTGGCCCCCCTGCAGAAAGGTCTCGGAGAA < 41bp 0.612206140214468 0.816812458247113 0.22375259 0.2773655 prediction 0.40921263606529 Functional Gain - MISP3 ENSG00000141854 CDS Human protein_coding chr19:14185242 chr19:14185243 nonsynonymous SNV 0.817 1 22 hm5C_associated_SNPs_127455 0 0 0 0 2 MISP3 chr19:14185202 3'AG 14185202 Downstream 42bp
chr19 14185243 14185243 1 + C T UCEC 14185242 + 14185222 14185262 41 TTGGTGGTGATCTGGCCCCCCCGCAGAAAGGTCTCGGAGAA TTGGTGGTGATCTGGCCCCCCTGCAGAAAGGTCTCGGAGAA < 41bp 0.612206140214468 0.816812458247113 0.22375259 0.2773655 prediction 0.40921263606529 Functional Gain - MISP3 ENSG00000141854 CDS Human protein_coding chr19:14185242 chr19:14185243 nonsynonymous SNV 0.817 1 22 hm5C_associated_SNPs_127455 0 0 0 0 2 MISP3 chr19:14185275 5'GT 14185275 Upstream 33bp
chr15 98513944 98513944 1 + C T rs76962941 98513943 + 98513923 98513963 41 TTTGCCTGTATACAAGAATTCCGGTTTCAACCCCCACCTCT TTTGCCTGTATACAAGAATTCTGGTTTCAACCCCCACCTCT < 41bp 0.462436405457495 0.704605116839656 0.8307816 0.3406111 prediction 0.409210233679312 Functional Gain - ARRDC4 ENSG00000140450 CDS Human protein_coding chr15:98513943 chr15:98513944 nonsynonymous SNV 0.804 2 22 hm5C_associated_SNPs_127456 0 0 1 0 1 ARRDC4 chr15:98513973 5'GT 98513973 Upstream 30bp
chr8 86158082 86158082 1 + C T rs200216745 86158081 + 86158061 86158101 41 TCGAGGCTCAGCTGGGGATACCGCGAGCACAACGGTGAGCG TCGAGGCTCAGCTGGGGATACTGCGAGCACAACGGTGAGCG < 41bp 0.584509579920594 0.789113734995243 0.5530726 0.5920356 prediction 0.409208310149299 Functional Gain - CA13 ENSG00000185015 CDS Human protein_coding chr8:86158081 chr8:86158082 nonsynonymous SNV 0.984 1 22 hm5C_associated_SNPs_127457 0 0 1 0 1 CA13 chr8:86158094 5'GT 86158094 Upstream 13bp
chr19 58331292 58331292 1 + T A HNSC 58331288 + 58331268 58331308 41 CCCAAGTAGTCCGATGGCTGCGGCTGCGCCGAGGCGCCCTA CCCAAGTAGTCCGATGGCTGCGGCAGCGCCGAGGCGCCCTA < 41bp 0.679694791418621 0.884294484500285 0.64387554 0.7917078 prediction 0.409199386163329 Functional Gain - ZNF552;FKBP1AP1 ENSG00000268750;ENSG00000269343 CDS Human other chr19:58331288 chr19:58331292 synonymous SNV . 0 25 hm5C_associated_SNPs_127460 0 0 1 0 1 ZNF552;FKBP1AP1 chr19:58331313 5'GT 58331313 Upstream 22bp
chr1 26507021 26507021 1 + C G THCA 26507020 + 26507000 26507040 41 AACCTGCTCCAGCTCTGCCCCCAAAGCCTCGAGGCTCTGGC AACCTGCTCCAGCTCTGCCCCGAAAGCCTCGAGGCTCTGGC < 41bp 0.37205508144993 0.704598451335759 0.047045738 0.107346535 prediction 0.409196902671518 Functional Gain - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26507020 chr1:26507021 nonsynonymous SNV 0.512 1 22 hm5C_associated_SNPs_127462 0 0 1 0 2 CNKSR1 chr1:26506944 3'AG 26506944 Downstream 78bp
chr1 26507021 26507021 1 + C G THCA 26507020 + 26507000 26507040 41 AACCTGCTCCAGCTCTGCCCCCAAAGCCTCGAGGCTCTGGC AACCTGCTCCAGCTCTGCCCCGAAAGCCTCGAGGCTCTGGC < 41bp 0.37205508144993 0.704598451335759 0.047045738 0.107346535 prediction 0.409196902671518 Functional Gain - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26507020 chr1:26507021 nonsynonymous SNV 0.512 1 22 hm5C_associated_SNPs_127462 0 0 1 0 2 CNKSR1 chr1:26507101 5'GT 26507101 Upstream 81bp
chr11 44927986 44927986 1 + A G UCEC 44927983 + 44927963 44928003 41 GCACCATGGAAGGCGACTGTCTGAGCTGCATGAAGTATCTG GCACCATGGAAGGCGACTGTCTGGGCTGCATGAAGTATCTG < 41bp 0.463056218717928 0.70457672376721 0.40571985 0.77058935 prediction 0.409153447534421 Functional Gain - TSPAN18 ENSG00000157570 CDS Human protein_coding chr11:44927983 chr11:44927986 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_127465 0 0 0 0 1 TSPAN18 chr11:44928030 5'GT 44928030 Upstream 45bp
chr10 103904794 103904794 1 + A G STAD 103904791 + 103904771 103904811 41 CGCCAGCGGCGTTGACATTCCCCAGGAGAAGAGGCCCCTAG CGCCAGCGGCGTTGACATTCCCCGGGAGAAGAGGCCCCTAG < 41bp 0.459177786664482 0.704573231539526 0.08441877 0.69369346 prediction 0.409146463079052 Functional Gain - PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103904791 chr10:103904794 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_127466 0 0 1 0 2 PPRC1 chr10:103904777 3'AG 103904777 Downstream 18bp
chr10 103904794 103904794 1 + A G STAD 103904791 + 103904771 103904811 41 CGCCAGCGGCGTTGACATTCCCCAGGAGAAGAGGCCCCTAG CGCCAGCGGCGTTGACATTCCCCGGGAGAAGAGGCCCCTAG < 41bp 0.459177786664482 0.704573231539526 0.08441877 0.69369346 prediction 0.409146463079052 Functional Gain - PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103904791 chr10:103904794 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_127466 0 0 1 0 2 PPRC1 chr10:103904847 5'GT 103904847 Upstream 54bp
chr22 50316901 50316901 1 + C G rs111557567 50316897 + 50316877 50316917 41 TCCAGATGTGGACGAGTGTGCGGCCGAGCCGCCTCCCTGCA TCCAGATGTGGACGAGTGTGCGGCGGAGCCGCCTCCCTGCA < 41bp 0.678243186231681 0.882811627160785 0.854738 0.9071897 prediction 0.409136881858207 Functional Gain - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50316897 chr22:50316901 synonymous SNV . 0 25 hm5C_associated_SNPs_127468 0 0 1 0 2 CRELD2 chr22:50316882 3'AG 50316882 Downstream 20bp
chr22 50316901 50316901 1 + C G rs111557567 50316897 + 50316877 50316917 41 TCCAGATGTGGACGAGTGTGCGGCCGAGCCGCCTCCCTGCA TCCAGATGTGGACGAGTGTGCGGCGGAGCCGCCTCCCTGCA < 41bp 0.678243186231681 0.882811627160785 0.854738 0.9071897 prediction 0.409136881858207 Functional Gain - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50316897 chr22:50316901 synonymous SNV . 0 25 hm5C_associated_SNPs_127468 0 0 1 0 2 CRELD2 chr22:50316965 5'GT 50316965 Upstream 65bp
chr2 26672885 26672885 1 + C G PRAD 26672881 + 26672861 26672901 41 CAGGGGTTCCTCATAGAGAGCAAGCTGCTGAGCCTTCTCCT CAGGGGTTCCTCATAGAGAGCAAGGTGCTGAGCCTTCTCCT < 41bp 0.391618000392364 0.70456610437705 0.42785364 0.9233615 prediction 0.409132208754101 Functional Gain - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26672881 chr2:26672885 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_127471 0 0 0 0 2 DRC1 chr2:26672864 3'AG 26672864 Downstream 22bp
chr2 26672885 26672885 1 + C G PRAD 26672881 + 26672861 26672901 41 CAGGGGTTCCTCATAGAGAGCAAGCTGCTGAGCCTTCTCCT CAGGGGTTCCTCATAGAGAGCAAGGTGCTGAGCCTTCTCCT < 41bp 0.391618000392364 0.70456610437705 0.42785364 0.9233615 prediction 0.409132208754101 Functional Gain - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26672881 chr2:26672885 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_127471 0 0 0 0 2 DRC1 chr2:26672953 5'GT 26672953 Upstream 69bp
chr6 88315680 88315680 1 + A G LIHC 88315677 + 88315657 88315697 41 TTTGACATTCGGAAGTCTAACAGAGGCCCTTCAGAATAATG TTTGACATTCGGAAGTCTAACAGGGGCCCTTCAGAATAATG < 41bp 0.587704402990421 0.792262373171197 0.43738705 0.8087275 prediction 0.409115940361552 Functional Gain - ORC3 ENSG00000135336 CDS Human protein_coding chr6:88315677 chr6:88315680 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_127473 0 0 1 0 2 ORC3 chr6:88315635 3'AG 88315635 Downstream 46bp
chr6 88315680 88315680 1 + A G LIHC 88315677 + 88315657 88315697 41 TTTGACATTCGGAAGTCTAACAGAGGCCCTTCAGAATAATG TTTGACATTCGGAAGTCTAACAGGGGCCCTTCAGAATAATG < 41bp 0.587704402990421 0.792262373171197 0.43738705 0.8087275 prediction 0.409115940361552 Functional Gain - ORC3 ENSG00000135336 CDS Human protein_coding chr6:88315677 chr6:88315680 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_127473 0 0 1 0 2 ORC3 chr6:88315739 5'GT 88315739 Upstream 60bp
chr3 51708346 51708346 1 + T A KIRC 51708344 + 51708324 51708364 41 TCGGACCTGCTACTACTGGGCCTGATTGGGGGCCTGACTCT TCGGACCTGCTACTACTGGGCCAGATTGGGGGCCTGACTCT < 41bp 0.508349296001036 0.712906990254376 0.044692785 0.20722628 prediction 0.40911538850668 Functional Gain - TEX264 ENSG00000164081 CDS Human protein_coding chr3:51708344 chr3:51708346 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_127474 0 0 1 0 1 TEX264 chr3:51708287 3'AG 51708287 Downstream 60bp
chr17 1783964 1783964 1 + A G LIHC 1783961 + 1783941 1783981 41 CATTGCGAATCCTGACATCCCAGAGGCCTATAAGCTTCGTG CATTGCGAATCCTGACATCCCAGGGGCCTATAAGCTTCGTG < 41bp 0.616240143442842 0.820786759435999 0.5314364 0.8845277 prediction 0.409093231986314 Functional Gain - RPA1 ENSG00000132383 CDS Human protein_coding chr17:1783961 chr17:1783964 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_127478 0 0 1 0 1 RPA1 chr17:1783985 5'GT 1783985 Upstream 22bp
chrX 47030498 47030498 1 + C T UCEC 47030497 + 47030477 47030517 41 GCGGCACAGGCACAGCCCCACCGGCCCGCCAGGCTTCCCCC GCGGCACAGGCACAGCCCCACTGGCCCGCCAGGCTTCCCCC < 41bp 0.466483436715482 0.704543585235496 0.45086032 0.59836704 prediction 0.409087170470993 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030497 chrX:47030498 synonymous SNV . 0 22 hm5C_associated_SNPs_127479 0 0 0 0 1 RBM10 chrX:47030427 3'AG 47030427 Downstream 72bp
chr7 1027006 1027006 1 + C T LUAD 1027005 + 1026985 1027025 41 CGGGTGCAGGAGGAGCTAGACCGCGTGCTGGGCCCTGGGCG CGGGTGCAGGAGGAGCTAGACTGCGTGCTGGGCCCTGGGCG < 41bp 0.560307338076913 0.764849255772103 0.32783878 0.3522768 prediction 0.409083835390379 Functional Gain - CYP2W1 ENSG00000073067 CDS Human protein_coding chr7:1027005 chr7:1027006 nonsynonymous SNV 0.844 3 22 hm5C_associated_SNPs_127481 0 0 1 0 1 CYP2W1 chr7:1026983 3'AG 1026983 Downstream 24bp
chr19 7711208 7711208 1 + C T SARC 7711207 + 7711187 7711227 41 ATCAGCTGTCCCGCTGGACCCCGGTCATCAAGGATGTAATG ATCAGCTGTCCCGCTGGACCCTGGTCATCAAGGATGTAATG < 41bp 0.47003943891281 0.704541909107371 0.072814316 0.020715863 prediction 0.409083818214741 Functional Gain - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7711207 chr19:7711208 nonsynonymous SNV 0.337 5 22 hm5C_associated_SNPs_127482 1 0 1 2 2 STXBP2 chr19:7711135 3'AG 7711135 Downstream 74bp
chr19 7711208 7711208 1 + C T SARC 7711207 + 7711187 7711227 41 ATCAGCTGTCCCGCTGGACCCCGGTCATCAAGGATGTAATG ATCAGCTGTCCCGCTGGACCCTGGTCATCAAGGATGTAATG < 41bp 0.47003943891281 0.704541909107371 0.072814316 0.020715863 prediction 0.409083818214741 Functional Gain - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7711207 chr19:7711208 nonsynonymous SNV 0.337 5 22 hm5C_associated_SNPs_127482 1 0 1 2 2 STXBP2 chr19:7711230 5'GT 7711230 Upstream 23bp
chr22 24106849 24106849 1 + C A LUSC 24106845 + 24106825 24106865 41 GAGGGAGAGGACATGGCCTCCACCCGCTATGAGTCCCTATT GAGGGAGAGGACATGGCCTCCACCAGCTATGAGTCCCTATT < 41bp 0.274512565279219 0.704533280939221 0.09257054 0.064724445 prediction 0.409066561878441 Functional Gain - C22orf15 ENSG00000169314 CDS Human protein_coding chr22:24106845 chr22:24106849 nonsynonymous SNV 0.606 0 25 hm5C_associated_SNPs_127484 0 0 0 0 2 C22orf15 chr22:24106826 3'AG 24106826 Downstream 24bp
chr22 24106849 24106849 1 + C A LUSC 24106845 + 24106825 24106865 41 GAGGGAGAGGACATGGCCTCCACCCGCTATGAGTCCCTATT GAGGGAGAGGACATGGCCTCCACCAGCTATGAGTCCCTATT < 41bp 0.274512565279219 0.704533280939221 0.09257054 0.064724445 prediction 0.409066561878441 Functional Gain - C22orf15 ENSG00000169314 CDS Human protein_coding chr22:24106845 chr22:24106849 nonsynonymous SNV 0.606 0 25 hm5C_associated_SNPs_127484 0 0 0 0 2 C22orf15 chr22:24106900 5'GT 24106900 Upstream 52bp
chr1 168550338 168550338 1 + A G rs35085347 168550335 + 168550315 168550355 41 GTCTGTGCTGATCCACAAGCCACATGGGTGAGAGACGTGGT GTCTGTGCTGATCCACAAGCCACGTGGGTGAGAGACGTGGT < 41bp 0.589854529062868 0.794386152383344 0.27603304 0.32802522 prediction 0.409063246640953 Functional Gain - XCL1 ENSG00000143184 CDS Human protein_coding chr1:168550335 chr1:168550338 synonymous SNV . 0 24 hm5C_associated_SNPs_127486 0 0 1 0 1 XCL1 chr1:168550290 3'AG 168550290 Downstream 49bp
chr15 41749916 41749916 1 + T A rs35588442 41749912 + 41749892 41749932 41 CAACAGCTCCTCTTCCAGTTCAGATTCAGACTCTTCCTCAG CAACAGCTCCTCTTCCAGTTCAGAATCAGACTCTTCCTCAG < 41bp 0.362781934585237 0.704528338995293 0.06679022 0.1073007 prediction 0.409056677990586 Functional Gain - RTF1 ENSG00000137815 CDS Human protein_coding chr15:41749912 chr15:41749916 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_127487 0 0 1 0 1 RTF1 chr15:41749870 3'AG 41749870 Downstream 47bp
chr9 95088364 95088364 1 + C A UCEC 95088363 + 95088343 95088383 41 GTGTGAGGACCCACCGGCGCCCTGGGAAGAGAAGTCCCGAG GTGTGAGGACCCACCGGCGCCATGGGAAGAGAAGTCCCGAG < 41bp 0.451058417896077 0.704526095281751 0.357217 0.70967215 prediction 0.409052190563502 Functional Gain - CENPP ENSG00000188312 CDS Human protein_coding chr9:95088363 chr9:95088364 synonymous SNV . 0 22 hm5C_associated_SNPs_127490 0 0 0 0 1 CENPP chr9:95088387 5'GT 95088387 Upstream 24bp
chr3 52545695 52545695 1 + C T COAD 52545694 + 52545674 52545714 41 CACCTGCAAGCTGGGCTTTGCCGGGGATGGCTACCAGTGCA CACCTGCAAGCTGGGCTTTGCTGGGGATGGCTACCAGTGCA < 41bp 0.564681814655405 0.769206173100788 0.949254 0.9323659 prediction 0.409048716890765 Functional Gain - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52545694 chr3:52545695 synonymous SNV . 0 22 hm5C_associated_SNPs_127492 0 0 0 0 2 STAB1 chr3:52545666 3'AG 52545666 Downstream 30bp
chr3 52545695 52545695 1 + C T COAD 52545694 + 52545674 52545714 41 CACCTGCAAGCTGGGCTTTGCCGGGGATGGCTACCAGTGCA CACCTGCAAGCTGGGCTTTGCTGGGGATGGCTACCAGTGCA < 41bp 0.564681814655405 0.769206173100788 0.949254 0.9323659 prediction 0.409048716890765 Functional Gain - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52545694 chr3:52545695 synonymous SNV . 0 22 hm5C_associated_SNPs_127492 0 0 0 0 2 STAB1 chr3:52545761 5'GT 52545761 Upstream 67bp
chr17 47230205 47230205 1 + C G SKCM 47230201 + 47230181 47230221 41 CTGCCCCTGCTGGTCCAGCCCAACCTCCCCTTTGGGTACCC CTGCCCCTGCTGGTCCAGCCCAACGTCCCCTTTGGGTACCC < 41bp 0.399064826827311 0.704516927536796 0.06171173 0.10929409 prediction 0.409033855073593 Functional Gain - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47230201 chr17:47230205 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_127494 0 0 0 0 2 B4GALNT2 chr17:47230162 3'AG 47230162 Downstream 44bp
chr17 47230205 47230205 1 + C G SKCM 47230201 + 47230181 47230221 41 CTGCCCCTGCTGGTCCAGCCCAACCTCCCCTTTGGGTACCC CTGCCCCTGCTGGTCCAGCCCAACGTCCCCTTTGGGTACCC < 41bp 0.399064826827311 0.704516927536796 0.06171173 0.10929409 prediction 0.409033855073593 Functional Gain - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47230201 chr17:47230205 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_127494 0 0 0 0 2 B4GALNT2 chr17:47230268 5'GT 47230268 Upstream 64bp
chr16 85688458 85688458 1 + A G UCEC 85688455 + 85688435 85688475 41 GTACCGTGACCGAGGACTACCTGAGAAGCTTCCGGCCCTAC GTACCGTGACCGAGGACTACCTGGGAAGCTTCCGGCCCTAC < 41bp 0.621044036556546 0.825545117295705 0.40996033 0.88093805 prediction 0.409002161478318 Functional Gain - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85688455 chr16:85688458 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_127499 0 0 1 0 1 GSE1 chr16:85688400 3'AG 85688400 Downstream 59bp
chr4 6642901 6642901 1 + C T SKCM 6642900 + 6642880 6642920 41 CGAGAAGGCCGAGGAGAAGGCCAAGGAGATTGCGAAGATGG CGAGAAGGCCGAGGAGAAGGCTAAGGAGATTGCGAAGATGG < 41bp 0.486762828641218 0.704500590932073 0.28292668 0.331231 prediction 0.409001181864145 Functional Gain - MRFAP1 ENSG00000179010 CDS Human protein_coding chr4:6642900 chr4:6642901 synonymous SNV . 0 22 hm5C_associated_SNPs_127500 0 0 1 0 1 MRFAP1 chr4:6642985 5'GT 6642985 Upstream 85bp
chr10 46222737 46222737 1 + C G rs565627677 46222736 + 46222716 46222756 41 TCCTCGGCCTGTGCTGGCAGCCTCGGAGCCCACCGAGCCGG TCCTCGGCCTGTGCTGGCAGCGTCGGAGCCCACCGAGCCGG < 41bp 0.46094922739782 0.704492076970781 0.14776945 0.42828763 prediction 0.408984153941563 Functional Gain - WASHC2C ENSG00000172661 UTR5 Human protein_coding chr10:46222736 chr10:46222737 . . 0 22 hm5C_associated_SNPs_127503 0 0 1 0 1 WASHC2C chr10:46222768 5'GT 46222768 Upstream 32bp
chr16 84695222 84695222 1 + T C LGG 84695220 + 84695200 84695240 41 GCGGGCACCATCTACAAAGACTTCGTGTACATCTCGGGGGG GCGGGCACCATCTACAAAGACTCCGTGTACATCTCGGGGGG < 41bp 0.422557263207628 0.704491062367539 0.07370657 0.12262851 prediction 0.408982124735078 Functional Gain - KLHL36 ENSG00000135686 CDS Human protein_coding chr16:84695220 chr16:84695222 nonsynonymous SNV 0.989 1 23 hm5C_associated_SNPs_127504 0 0 1 0 1 KLHL36 chr16:84695184 3'AG 84695184 Downstream 39bp
chr3 140409832 140409832 1 + A G LUAD 140409829 + 140409809 140409849 41 GGTTTACTGGACATGTCCAGCAGAAGACGTGGACTCTTTTG GGTTTACTGGACATGTCCAGCAGGAGACGTGGACTCTTTTG < 41bp 0.589424478877819 0.79391479307046 0.6260936 0.89210796 prediction 0.408980628385281 Functional Gain - TRIM42 ENSG00000155890 CDS Human protein_coding chr3:140409829 chr3:140409832 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_127506 0 0 0 0 1 TRIM42 chr3:140409810 3'AG 140409810 Downstream 23bp
chr16 20935348 20935348 1 + C A LUSC 20935347 + 20935327 20935367 41 TCTGCCTCCAATGGGCCTTACCCCACTCCGAGGCCGGGGAC TCTGCCTCCAATGGGCCTTACACCACTCCGAGGCCGGGGAC < 41bp 0.618566759254664 0.823050128025752 0.28858188 0.33208197 prediction 0.408966737542175 Functional Gain - LYRM1 ENSG00000102897 CDS Human protein_coding chr16:20935347 chr16:20935348 synonymous SNV . 0 22 hm5C_associated_SNPs_127509 0 0 1 0 1 LYRM1 chr16:20935322 3'AG 20935322 Downstream 27bp
chr20 37267969 37267969 1 + C T rs377671738 37267968 + 37267948 37267988 41 GATTTGCTCAAAAGGTTCATCCGGAAGCTGCCGACACCTTT GATTTGCTCAAAAGGTTCATCTGGAAGCTGCCGACACCTTT < 41bp 0.636041025869341 0.840522510631388 0.88768506 0.4539619 prediction 0.408962969524094 Functional Gain - ARHGAP40 ENSG00000124143 CDS Human protein_coding chr20:37267968 chr20:37267969 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_127510 0 0 0 0 2 ARHGAP40 chr20:37267870 3'AG 37267870 Downstream 100bp
chr20 37267969 37267969 1 + C T rs377671738 37267968 + 37267948 37267988 41 GATTTGCTCAAAAGGTTCATCCGGAAGCTGCCGACACCTTT GATTTGCTCAAAAGGTTCATCTGGAAGCTGCCGACACCTTT < 41bp 0.636041025869341 0.840522510631388 0.88768506 0.4539619 prediction 0.408962969524094 Functional Gain - ARHGAP40 ENSG00000124143 CDS Human protein_coding chr20:37267968 chr20:37267969 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_127510 0 0 0 0 2 ARHGAP40 chr20:37268029 5'GT 37268029 Upstream 61bp
chr2 241817508 241817508 1 + T G STAD 241817504 + 241817484 241817524 41 TATGACTGGAGAGACATCGTCAGCTACGTCATAGACCACTT TATGACTGGAGAGACATCGTCAGCGACGTCATAGACCACTT < 41bp 0.514807355275121 0.719281886405189 0.834621 0.87046623 prediction 0.408949062260137 Functional Gain - AGXT ENSG00000172482 CDS Human protein_coding chr2:241817504 chr2:241817508 nonsynonymous SNV 0.234 5 25 hm5C_associated_SNPs_127511 0 0 1 0 2 AGXT chr2:241817439 3'AG 241817439 Downstream 70bp
chr2 241817508 241817508 1 + T G STAD 241817504 + 241817484 241817524 41 TATGACTGGAGAGACATCGTCAGCTACGTCATAGACCACTT TATGACTGGAGAGACATCGTCAGCGACGTCATAGACCACTT < 41bp 0.514807355275121 0.719281886405189 0.834621 0.87046623 prediction 0.408949062260137 Functional Gain - AGXT ENSG00000172482 CDS Human protein_coding chr2:241817504 chr2:241817508 nonsynonymous SNV 0.234 5 25 hm5C_associated_SNPs_127511 0 0 1 0 2 AGXT chr2:241817567 5'GT 241817567 Upstream 60bp
chr7 65225426 65225426 1 + T G rs111970336 65225422 + 65225402 65225442 41 ATCCAACAGGCTGTGTGGTTCCGGTGCTGGTGCCGTGGAAG ATCCAACAGGCTGTGTGGTTCCGGGGCTGGTGCCGTGGAAG < 41bp 0.538987155497065 0.743460549654341 0.29602736 0.83628094 prediction 0.408946788314551 Functional Gain - CCT6P1 ENSG00000228409 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:65225422 chr7:65225426 . . 0 25 hm5C_associated_SNPs_127512 0 0 1 0 1 CCT6P1 chr7:65225411 3'AG 65225411 Downstream 16bp
chr15 85402488 85402488 1 + C T rs201413329 85402487 + 85402467 85402507 41 CTCTCAGCCCCACAGGTGATCCGGAAGATTCGGGTGGAGCA CTCTCAGCCCCACAGGTGATCTGGAAGATTCGGGTGGAGCA < 41bp 0.452016292071368 0.704461619564667 0.92370045 0.8745588 prediction 0.408923239129334 Functional Gain - ALPK3 ENSG00000136383 CDS Human protein_coding chr15:85402487 chr15:85402488 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_127516 1 0 0 0 1 ALPK3 chr15:85402474 3'AG 85402474 Downstream 15bp
chr15 74565210 74565210 1 + T C STAD 74565208 + 74565188 74565228 41 ATGAACTTTGACGTGCCTCGCGTCAGCCAGAACGGATGCCC ATGAACTTTGACGTGCCTCGCGCCAGCCAGAACGGATGCCC < 41bp 0.414981080624524 0.704460263743924 0.16556579 0.3952203 prediction 0.408920527487848 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74565208 chr15:74565210 nonsynonymous SNV 0.595 0 23 hm5C_associated_SNPs_127518 0 0 0 0 1 CCDC33 chr15:74565232 5'GT 74565232 Upstream 23bp
chr2 29169540 29169540 1 + C T BRCA 29169539 + 29169519 29169559 41 TGAAGAGGAAGATGAGGATGCCGAAGGAAAAGATGAAGAAA TGAAGAGGAAGATGAGGATGCTGAAGGAAAAGATGAAGAAA < 41bp 0.580751550563378 0.785211709588785 0.7983095 0.63217986 prediction 0.408920318050814 Functional Gain - WDR43 ENSG00000163811 CDS Human protein_coding chr2:29169539 chr2:29169540 synonymous SNV . 0 22 hm5C_associated_SNPs_127519 0 0 1 0 1 WDR43 chr2:29169466 3'AG 29169466 Downstream 75bp
chr15 78832749 78832749 1 + C A rs151040409 78832748 + 78832728 78832768 41 CCTCGGCCGTCCCGCTCCCCCCGCCCCAACCCAGCGGTTCT CCTCGGCCGTCCCGCTCCCCCAGCCCCAACCCAGCGGTTCT < 41bp 0.603588814849477 0.808044901798802 0.14581743 0.30001652 prediction 0.40891217389865 Functional Gain - PSMA4 ENSG00000041357 UTR5 Human protein_coding chr15:78832748 chr15:78832749 . . 0 22 hm5C_associated_SNPs_127520 0 0 0 0 1 PSMA4 chr15:78832805 5'GT 78832805 Upstream 57bp
chr4 55564717 55564717 1 + T C COAD 55564715 + 55564695 55564735 41 GTGCTGTCGGAAAAATTCATCCTGAAAGTGAGGCCAGGTAC GTGCTGTCGGAAAAATTCATCCCGAAAGTGAGGCCAGGTAC < 41bp 0.421544820081396 0.704446879437669 0.33216813 0.39984927 prediction 0.408893758875337 Functional Gain - KIT ENSG00000157404 CDS Human protein_coding chr4:55564715 chr4:55564717 nonsynonymous SNV 0.723 3 23 hm5C_associated_SNPs_127523 0 0 0 0 1 KIT chr4:55564731 5'GT 55564731 Upstream 15bp
chr1 9778766 9778766 1 + C T rs28730672 9778765 + 9778745 9778785 41 TCTACAGCTGGTGGTGCAGGCCGGGCTTTTCCACGGCAACG TCTACAGCTGGTGGTGCAGGCTGGGCTTTTCCACGGCAACG < 41bp 0.580538330676854 0.784973580833244 0.82432115 0.545794 prediction 0.40887050031278 Functional Gain - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9778765 chr1:9778766 synonymous SNV . 0 22 hm5C_associated_SNPs_127527 0 0 1 0 1 PIK3CD chr1:9778752 3'AG 9778752 Downstream 15bp
chr9 34514537 34514537 1 + T C STAD 34514535 + 34514515 34514555 41 GTGAAGATCTGGGACCACACCATCAAGTGAGGGGCCTGTTC GTGAAGATCTGGGACCACACCACCAAGTGAGGGGCCTGTTC < 41bp 0.675366729909084 0.879801804649083 0.049887598 0.34318012 prediction 0.408870149479999 Functional Gain - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34514535 chr9:34514537 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_127528 0 0 0 0 1 DNAI1 chr9:34514540 5'GT 34514540 Upstream 4bp
chr5 180376974 180376974 1 + T C rs146303629 180376971 + 180376951 180376991 41 TCTGATCTGAAAACTGTAACCCATAGAAAAGCTCCCCAGGA TCTGATCTGAAAACTGTAACCCACAGAAAAGCTCCCCAGGA < 41bp 0.490334882214348 0.704429229470453 0.23328498 0.17804116 prediction 0.408858458940907 Functional Gain - BTNL8 ENSG00000113303 CDS Human protein_coding chr5:180376971 chr5:180376974 synonymous SNV . 0 24 hm5C_associated_SNPs_127531 0 0 0 0 1 BTNL8 chr5:180376904 3'AG 180376904 Downstream 71bp
chr2 241979577 241979577 1 + C T rs114600580 241979576 + 241979556 241979596 41 TGCGGTGTGTGTGTGCCAGGCCGGATACACCGGAGCAGCCT TGCGGTGTGTGTGTGCCAGGCTGGATACACCGGAGCAGCCT < 41bp 0.61517268608347 0.819600064939641 0.6066314 0.26028413 prediction 0.408854757712341 Functional Gain - SNED1 ENSG00000162804 CDS Human protein_coding chr2:241979576 chr2:241979577 synonymous SNV . 0 22 hm5C_associated_SNPs_127532 0 0 0 0 2 SNED1 chr2:241979492 3'AG 241979492 Downstream 86bp
chr2 241979577 241979577 1 + C T rs114600580 241979576 + 241979556 241979596 41 TGCGGTGTGTGTGTGCCAGGCCGGATACACCGGAGCAGCCT TGCGGTGTGTGTGTGCCAGGCTGGATACACCGGAGCAGCCT < 41bp 0.61517268608347 0.819600064939641 0.6066314 0.26028413 prediction 0.408854757712341 Functional Gain - SNED1 ENSG00000162804 CDS Human protein_coding chr2:241979576 chr2:241979577 synonymous SNV . 0 22 hm5C_associated_SNPs_127532 0 0 0 0 2 SNED1 chr2:241979605 5'GT 241979605 Upstream 29bp
chr2 108614319 108614319 1 + T C rs201965363 108614316 + 108614296 108614336 41 GCCACCATCAGCGTGATCATCGATGTGGATATGCACATTTC GCCACCATCAGCGTGATCATCGACGTGGATATGCACATTTC < 41bp 0.537066334993991 0.74149369718079 0.0560019 0.30078617 prediction 0.408854724373597 Functional Gain - SLC5A7 ENSG00000115665 CDS Human protein_coding chr2:108614316 chr2:108614319 synonymous SNV . 0 24 hm5C_associated_SNPs_127533 0 0 0 0 1 SLC5A7 chr2:108614294 3'AG 108614294 Downstream 26bp
chr20 45362402 45362402 1 + C A UCEC 45362401 + 45362381 45362421 41 TCTTTGTCTGACAGGTTCACCCTGAGCTTTGGCCACAGGCA TCTTTGTCTGACAGGTTCACCATGAGCTTTGGCCACAGGCA < 41bp 0.444340955491158 0.704420518634172 0.18570116 0.39192984 prediction 0.408841037268344 Functional Gain - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45362401 chr20:45362402 nonsynonymous SNV 0.373 1 22 hm5C_associated_SNPs_127536 0 0 1 0 1 SLC2A10 chr20:45362395 3'AG 45362395 Downstream 8bp
chr3 132531630 132531630 1 + A G rs115304717 132531627 + 132531607 132531647 41 GTCCTCCTGCCTCAGCCTTCCAAAGAGCTGGGATTACAGGC GTCCTCCTGCCTCAGCCTTCCAAGGAGCTGGGATTACAGGC < 41bp 0.474042741388837 0.704420364565517 0.40119037 0.52042913 prediction 0.408840729131035 Functional Gain - NPHP3-AS1 ENSG00000248724 ncRNA_exonic Human antisense chr3:132531627 chr3:132531630 . . 0 24 hm5C_associated_SNPs_127537 0 0 0 0 2 NPHP3-AS1 chr3:132531553 3'AG 132531553 Downstream 78bp
chr3 132531630 132531630 1 + A G rs115304717 132531627 + 132531607 132531647 41 GTCCTCCTGCCTCAGCCTTCCAAAGAGCTGGGATTACAGGC GTCCTCCTGCCTCAGCCTTCCAAGGAGCTGGGATTACAGGC < 41bp 0.474042741388837 0.704420364565517 0.40119037 0.52042913 prediction 0.408840729131035 Functional Gain - NPHP3-AS1 ENSG00000248724 ncRNA_exonic Human antisense chr3:132531627 chr3:132531630 . . 0 24 hm5C_associated_SNPs_127537 0 0 0 0 2 NPHP3-AS1 chr3:132531719 5'GT 132531719 Upstream 90bp
chr20 6758963 6758963 1 + C T SKCM 6758962 + 6758942 6758982 41 TTCTTTAATTTAAGTTCTATCCCCACGGAGGAGTTTATCAC TTCTTTAATTTAAGTTCTATCTCCACGGAGGAGTTTATCAC < 41bp 0.430374343546904 0.704419813983745 0.049247265 0.9347906 prediction 0.408839627967491 Functional Gain - BMP2 ENSG00000125845 CDS Human protein_coding chr20:6758962 chr20:6758963 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_127538 0 0 0 0 1 BMP2 chr20:6758892 3'AG 6758892 Downstream 72bp
chr19 50189873 50189873 1 + C T SKCM 50189872 + 50189852 50189892 41 GCGCCCCCAGGCCCCGAGTCCCCGTACACGCACTGGAAGCA GCGCCCCCAGGCCCCGAGTCCTCGTACACGCACTGGAAGCA < 41bp 0.435998017939727 0.7044117319675 0.18201101 0.22347513 prediction 0.408823463934999 Functional Gain - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50189872 chr19:50189873 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_127540 0 0 1 0 1 PRMT1 chr19:50189862 3'AG 50189862 Downstream 12bp
chr19 57922713 57922713 1 + C G rs12974211 57922709 + 57922689 57922729 41 CTCTGTCAGCGTCCAGGTCACTGCCGCTCCCGCCCCGCTCT CTCTGTCAGCGTCCAGGTCACTGCGGCTCCCGCCCCGCTCT < 41bp 0.631314219243871 0.835719652979824 0.67472863 0.91905457 prediction 0.408810867471907 Functional Gain - ZNF17 ENSG00000186272 UTR5 Human protein_coding chr19:57922709 chr19:57922713 . . 0 25 hm5C_associated_SNPs_127542 0 0 0 0 1 ZNF17 chr19:57922774 5'GT 57922774 Upstream 62bp
chrX 47863745 47863745 1 + A G rs516464 47863742 + 47863722 47863762 41 TTGAACTTGGAGGGCAGCAACAGAGTTGCAGGTGTAAAATA TTGAACTTGGAGGGCAGCAACAGGGTTGCAGGTGTAAAATA < 41bp 0.610215960289664 0.814615153727171 0.77073467 0.9060677 prediction 0.408798386875014 Functional Gain - SPACA5 ENSG00000171489 UTR5 Human protein_coding chrX:47863742 chrX:47863745 . . 0 24 hm5C_associated_SNPs_127545 0 0 0 0 1 SPACA5 chrX:47863815 5'GT 47863815 Upstream 71bp
chr8 38913151 38913151 1 + A G UCEC 38913148 + 38913128 38913168 41 AACCAGTGAGTGTGATGTTCCAGAGTACTGCAATGGTTCTT AACCAGTGAGTGTGATGTTCCAGGGTACTGCAATGGTTCTT < 41bp 0.595378415036324 0.799761429109908 0.77846 0.89858556 prediction 0.408766028147168 Functional Gain - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38913148 chr8:38913151 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_127549 0 0 1 0 1 ADAM9 chr8:38913096 3'AG 38913096 Downstream 56bp
chr9 101822224 101822224 1 + T G COAD 101822220 + 101822200 101822240 41 CCAGGACAGCCAGGGCTTCCCGGATCCAGAAACCTGGTCAG CCAGGACAGCCAGGGCTTCCCGGAGCCAGAAACCTGGTCAG < 41bp 0.517846524656982 0.722225998239256 0.4522401 0.93162465 prediction 0.408758947164547 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101822220 chr9:101822224 nonsynonymous SNV 0.978 0 25 hm5C_associated_SNPs_127551 0 0 0 0 2 COL15A1 chr9:101822171 3'AG 101822171 Downstream 54bp
chr9 101822224 101822224 1 + T G COAD 101822220 + 101822200 101822240 41 CCAGGACAGCCAGGGCTTCCCGGATCCAGAAACCTGGTCAG CCAGGACAGCCAGGGCTTCCCGGAGCCAGAAACCTGGTCAG < 41bp 0.517846524656982 0.722225998239256 0.4522401 0.93162465 prediction 0.408758947164547 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101822220 chr9:101822224 nonsynonymous SNV 0.978 0 25 hm5C_associated_SNPs_127551 0 0 0 0 2 COL15A1 chr9:101822235 5'GT 101822235 Upstream 12bp
chr7 5925774 5925774 1 + C T rs546944968 5925773 + 5925753 5925793 41 GATAATCACCTGGAAGGATTCCAAAGCCCTGGGAATGGGGA GATAATCACCTGGAAGGATTCTAAAGCCCTGGGAATGGGGA < 41bp 0.494354162496809 0.704376417954603 0.36856478 0.13888726 prediction 0.408752835909206 Functional Gain - OCM ENSG00000122543 UTR3 Human protein_coding chr7:5925773 chr7:5925774 . . 0 22 hm5C_associated_SNPs_127554 0 0 0 0 1 OCM chr7:5925695 3'AG 5925695 Downstream 80bp
chrX 68059560 68059560 1 + C T UCEC 68059559 + 68059539 68059579 41 AACCGGGAGGGCGGTGTGTGCCGCACACGCACCATGAAGAT AACCGGGAGGGCGGTGTGTGCTGCACACGCACCATGAAGAT < 41bp 0.641087025812687 0.845459139336815 0.13345563 0.14835423 prediction 0.408744227048256 Functional Gain - EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059559 chrX:68059560 nonsynonymous SNV 0.983 2 22 hm5C_associated_SNPs_127556 0 0 0 0 2 EFNB1 chrX:68059507 3'AG 68059507 Downstream 54bp
chrX 68059560 68059560 1 + C T UCEC 68059559 + 68059539 68059579 41 AACCGGGAGGGCGGTGTGTGCCGCACACGCACCATGAAGAT AACCGGGAGGGCGGTGTGTGCTGCACACGCACCATGAAGAT < 41bp 0.641087025812687 0.845459139336815 0.13345563 0.14835423 prediction 0.408744227048256 Functional Gain - EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059559 chrX:68059560 nonsynonymous SNV 0.983 2 22 hm5C_associated_SNPs_127556 0 0 0 0 2 EFNB1 chrX:68059599 5'GT 68059599 Upstream 40bp
chr1 111773540 111773540 1 + C A LIHC 111773539 + 111773519 111773559 41 AAGAGTGAAGTGATGCTCTACCAGACCATCAACAGTCTCAA AAGAGTGAAGTGATGCTCTACAAGACCATCAACAGTCTCAA < 41bp 0.442195390893463 0.704371960411744 0.024834394 0.006049782 prediction 0.408743920823488 Functional Gain - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111773539 chr1:111773540 nonsynonymous SNV 0.237 0 22 hm5C_associated_SNPs_127557 0 0 0 0 1 CHI3L2 chr1:111773565 5'GT 111773565 Upstream 26bp
chr5 72469597 72469597 1 + T A LIHC 72469595 + 72469575 72469615 41 TCTGGAGGGGCAGCAGCCGCCATGTCAAGTCCTCCTCAATA TCTGGAGGGGCAGCAGCCGCCAAGTCAAGTCCTCCTCAATA < 41bp 0.497493461803534 0.704365888935898 0.49288708 0.8045258 prediction 0.408731777871796 Functional Gain - TMEM174 ENSG00000164325 CDS Human protein_coding chr5:72469595 chr5:72469597 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_127559 0 0 0 0 1 TMEM174 chr5:72469696 5'GT 72469696 Upstream 100bp
chr3 13613081 13613081 1 + C T rs113265853 13613080 + 13613060 13613100 41 CCCGAGAAGTGCCCAGGAAGCCGCAAGTTCTGCCCCATTCC CCCGAGAAGTGCCCAGGAAGCTGCAAGTTCTGCCCCATTCC < 41bp 0.608991746645091 0.813354682155499 0.3561638 0.72191167 prediction 0.408725871020817 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13613080 chr3:13613081 nonsynonymous SNV 0.005 0 22 hm5C_associated_SNPs_127560 0 0 0 0 1 FBLN2 chr3:13613161 5'GT 13613161 Upstream 81bp
chr17 19437339 19437339 1 + C T rs61733934 19437338 + 19437318 19437358 41 GTCGCGCTGCTTGCGGCTGTCCGCCTTCCGAGAAGAGCTGC GTCGCGCTGCTTGCGGCTGTCTGCCTTCCGAGAAGAGCTGC < 41bp 0.558297988138004 0.762659271704564 0.26124242 0.27215752 prediction 0.40872256713312 Functional Gain - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19437338 chr17:19437339 synonymous SNV . 0 22 hm5C_associated_SNPs_127562 0 0 1 0 1 SLC47A1 chr17:19437387 5'GT 19437387 Upstream 49bp
chr9 108147762 108147762 1 + T A KIRC 108147758 + 108147738 108147778 41 AGCTGGTAAGGGAGGCGTCGCTGATTCCAGAGAGCTAAAGC AGCTGGTAAGGGAGGCGTCGCTGAATCCAGAGAGCTAAAGC < 41bp 0.362609687882923 0.704358821244001 0.41912526 0.32826176 prediction 0.408717642488003 Functional Gain - SLC44A1 ENSG00000070214 CDS Human protein_coding chr9:108147758 chr9:108147762 nonsynonymous SNV 0.990 0 25 hm5C_associated_SNPs_127565 0 0 1 0 2 SLC44A1 chr9:108147703 3'AG 108147703 Downstream 60bp
chr9 108147762 108147762 1 + T A KIRC 108147758 + 108147738 108147778 41 AGCTGGTAAGGGAGGCGTCGCTGATTCCAGAGAGCTAAAGC AGCTGGTAAGGGAGGCGTCGCTGAATCCAGAGAGCTAAAGC < 41bp 0.362609687882923 0.704358821244001 0.41912526 0.32826176 prediction 0.408717642488003 Functional Gain - SLC44A1 ENSG00000070214 CDS Human protein_coding chr9:108147758 chr9:108147762 nonsynonymous SNV 0.990 0 25 hm5C_associated_SNPs_127565 0 0 1 0 2 SLC44A1 chr9:108147783 5'GT 108147783 Upstream 22bp
chr17 44949914 44949914 1 + C A UCEC 44949913 + 44949893 44949933 41 CGGGAAGTCCTGACGCCCTTCCCAGGATTGGGCACTGCGGC CGGGAAGTCCTGACGCCCTTCACAGGATTGGGCACTGCGGC < 41bp 0.430147671403433 0.704357780243411 0.14119524 0.2524736 prediction 0.408715560486822 Functional Gain - WNT9B ENSG00000158955 CDS Human protein_coding chr17:44949913 chr17:44949914 nonsynonymous SNV 0.985 0 22 hm5C_associated_SNPs_127566 0 0 0 0 1 WNT9B chr17:44949883 3'AG 44949883 Downstream 32bp
chr3 89468456 89468456 1 + A G LIHC 89468453 + 89468433 89468473 41 AAGTTGGCTACACAGAAAAGCAGAGGAGAGACTTCCTGGGA AAGTTGGCTACACAGAAAAGCAGGGGAGAGACTTCCTGGGA < 41bp 0.476475427205166 0.704348183700001 0.9014968 0.93662274 prediction 0.408696367400001 Functional Gain - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89468453 chr3:89468456 nonsynonymous SNV 0.905 5 24 hm5C_associated_SNPs_127571 0 0 0 0 1 EPHA3 chr3:89468540 5'GT 89468540 Upstream 85bp
chr6 3081292 3081292 1 + T C UCEC 3081290 + 3081270 3081310 41 TGCTACTTACATGGAAAAGGCGTGATACACAAGGACCTGAA TGCTACTTACATGGAAAAGGCGCGATACACAAGGACCTGAA < 41bp 0.524239887343833 0.728586624319355 0.2411201 0.3525619 prediction 0.408693473951045 Functional Gain - RIPK1 ENSG00000137275 CDS Human protein_coding chr6:3081290 chr6:3081292 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_127573 0 0 1 0 2 RIPK1 chr6:3081213 3'AG 3081213 Downstream 80bp
chr6 3081292 3081292 1 + T C UCEC 3081290 + 3081270 3081310 41 TGCTACTTACATGGAAAAGGCGTGATACACAAGGACCTGAA TGCTACTTACATGGAAAAGGCGCGATACACAAGGACCTGAA < 41bp 0.524239887343833 0.728586624319355 0.2411201 0.3525619 prediction 0.408693473951045 Functional Gain - RIPK1 ENSG00000137275 CDS Human protein_coding chr6:3081290 chr6:3081292 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_127573 0 0 1 0 2 RIPK1 chr6:3081350 5'GT 3081350 Upstream 59bp
chr1 36786686 36786686 1 + C T SKCM 36786685 + 36786665 36786705 41 GATGCAGGGGACCCAGAAGTCCCAGACCCCGCGCGTCATCC GATGCAGGGGACCCAGAAGTCTCAGACCCCGCGCGTCATCC < 41bp 0.466054498534859 0.704344924500784 0.20283508 0.19747126 prediction 0.408689849001568 Functional Gain - SH3D21 ENSG00000214193 CDS Human protein_coding chr1:36786685 chr1:36786686 synonymous SNV . 0 22 hm5C_associated_SNPs_127574 0 0 1 0 1 SH3D21 chr1:36786657 3'AG 36786657 Downstream 30bp
chr10 73104039 73104039 1 + T G COAD 73104035 + 73104015 73104055 41 TGTGCCTGGTGGCCAACTTCCTGCTTGTCAACAGGTAGGCG TGTGCCTGGTGGCCAACTTCCTGCGTGTCAACAGGTAGGCG < 41bp 0.522037514634582 0.726381583971932 0.253931 0.44315693 prediction 0.4086881386747 Functional Gain - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73104035 chr10:73104039 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_127575 0 0 0 0 2 SLC29A3 chr10:73103966 3'AG 73103966 Downstream 74bp
chr10 73104039 73104039 1 + T G COAD 73104035 + 73104015 73104055 41 TGTGCCTGGTGGCCAACTTCCTGCTTGTCAACAGGTAGGCG TGTGCCTGGTGGCCAACTTCCTGCGTGTCAACAGGTAGGCG < 41bp 0.522037514634582 0.726381583971932 0.253931 0.44315693 prediction 0.4086881386747 Functional Gain - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73104035 chr10:73104039 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_127575 0 0 0 0 2 SLC29A3 chr10:73104048 5'GT 73104048 Upstream 10bp
chr10 44101908 44101908 1 + C A rs56333360 44101907 + 44101887 44101927 41 TGGTGCGAGCGCTGCACCAGCCCCTGGCTGGTGGTTACTGT TGGTGCGAGCGCTGCACCAGCACCTGGCTGGTGGTTACTGT < 41bp 0.463284102490983 0.704337913197212 0.19940016 0.15777752 prediction 0.408675826394424 Functional Gain - ZNF485 ENSG00000198298 UTR5 Human protein_coding chr10:44101907 chr10:44101908 . . 0 22 hm5C_associated_SNPs_127578 0 0 1 0 1 ZNF485 chr10:44101994 5'GT 44101994 Upstream 87bp
chr9 138440525 138440525 1 + C A rs2590500 138440521 + 138440501 138440541 41 GCAGGGCCGTGCCGCTGTCCCCACCTTGGCTCACCTGGCCA GCAGGGCCGTGCCGCTGTCCCCACATTGGCTCACCTGGCCA < 41bp 0.297206763327023 0.704330611033673 0.013220668 0.056448042 prediction 0.408661222067346 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138440521 chr9:138440525 nonsynonymous SNV 0.007 2 25 hm5C_associated_SNPs_127581 0 0 0 0 2 OBP2A chr9:138440489 3'AG 138440489 Downstream 37bp
chr9 138440525 138440525 1 + C A rs2590500 138440521 + 138440501 138440541 41 GCAGGGCCGTGCCGCTGTCCCCACCTTGGCTCACCTGGCCA GCAGGGCCGTGCCGCTGTCCCCACATTGGCTCACCTGGCCA < 41bp 0.297206763327023 0.704330611033673 0.013220668 0.056448042 prediction 0.408661222067346 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138440521 chr9:138440525 nonsynonymous SNV 0.007 2 25 hm5C_associated_SNPs_127581 0 0 0 0 2 OBP2A chr9:138440505 3'AG 138440505 Downstream 21bp
chr1 50610651 50610651 1 + A G UCEC 50610648 + 50610628 50610668 41 GATAATTAGCACCATGGAGCCTCAGGTGTCAAATGGTCCGA GATAATTAGCACCATGGAGCCTCGGGTGTCAAATGGTCCGA < 41bp 0.554020275635215 0.758349398431068 0.051885843 0.12907138 prediction 0.408658245591707 Functional Gain - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50610648 chr1:50610651 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_127584 0 0 0 0 1 ELAVL4 chr1:50610629 3'AG 50610629 Downstream 23bp
chr10 26592976 26592976 1 + A G rs188143768 26592973 + 26592953 26592993 41 GCTCTAATAGAGAACATGCCCTCAGCTAAGCCCCCTACTGA GCTCTAATAGAGAACATGCCCTCGGCTAAGCCCCCTACTGA < 41bp 0.559070099474175 0.763393022169921 0.0921469 0.11162168 prediction 0.408645845391493 Functional Gain - GAD2 ENSG00000136750 UTR3 Human protein_coding chr10:26592973 chr10:26592976 . . 0 24 hm5C_associated_SNPs_127585 0 0 0 0 1 GAD2 chr10:26592963 3'AG 26592963 Downstream 14bp
chrX 1484134 1484134 1 + C T HNSC 1484133 + 1484113 1484153 41 TCTTGAGCGCCTGGAGCACCCCCCAGCGCTTCGGTGAGTGG TCTTGAGCGCCTGGAGCACCCTCCAGCGCTTCGGTGAGTGG < 41bp 0.638632647751175 0.842954851926301 0.033898473 0.90568167 prediction 0.408644408350251 Functional Gain - IL3RA ENSG00000185291 CDS Human protein_coding chrX:1484133 chrX:1484134 nonsynonymous SNV 0.005 3 22 hm5C_associated_SNPs_127586 0 0 0 0 1 IL3RA chrX:1484145 5'GT 1484145 Upstream 12bp
chr1 32677370 32677370 1 + C A rs182464428 32677366 + 32677346 32677386 41 CTGACATGGGTTTCAGGGTCCTCCCGTGACTCGCCACTTGT CTGACATGGGTTTCAGGGTCCTCCAGTGACTCGCCACTTGT < 41bp 0.289755277526456 0.704319611135446 0.20349151 0.944227 prediction 0.408639222270891 Functional Gain - DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32677366 chr1:32677370 synonymous SNV . 0 25 hm5C_associated_SNPs_127589 0 0 0 0 1 DCDC2B chr1:32677438 5'GT 32677438 Upstream 69bp
chr2 242509580 242509580 1 + C T COAD 242509579 + 242509559 242509599 41 GGTGTCCCTGTATGCGGTGGCCGCGGGGCTGGCCGTGGACT GGTGTCCCTGTATGCGGTGGCTGCGGGGCTGGCCGTGGACT < 41bp 0.463861040401651 0.704318742251365 0.43805623 0.337835 prediction 0.40863748450273 Functional Gain - BOK ENSG00000176720 CDS Human protein_coding chr2:242509579 chr2:242509580 synonymous SNV . 0 22 hm5C_associated_SNPs_127590 0 0 1 0 1 BOK chr2:242509540 3'AG 242509540 Downstream 41bp
chr19 5720756 5720756 1 + T G UCEC 5720752 + 5720732 5720772 41 GGCGGAAGCCCAAGTCGATGCTGATGTTGATGCTGGTGGCG GGCGGAAGCCCAAGTCGATGCTGAGGTTGATGCTGGTGGCG < 41bp 0.556205690557337 0.760523035595232 0.3290649 0.34007353 prediction 0.408634690075791 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5720752 chr19:5720756 nonsynonymous SNV 0.014 1 25 hm5C_associated_SNPs_127591 0 0 0 0 1 CATSPERD chr19:5720819 5'GT 5720819 Upstream 64bp
chr3 15064790 15064790 1 + C T UCEC 15064789 + 15064769 15064809 41 TCAACTGAGAAAATCTATATCCGGAAAGACCTGAGAAGTCC TCAACTGAGAAAATCTATATCTGGAAAGACCTGAGAAGTCC < 41bp 0.639709388427458 0.844021540061458 0.32960504 0.1720964 prediction 0.408624303268001 Functional Gain - NR2C2 ENSG00000177463 CDS Human protein_coding chr3:15064789 chr3:15064790 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_127595 0 0 1 0 2 NR2C2 chr3:15064707 3'AG 15064707 Downstream 84bp
chr3 15064790 15064790 1 + C T UCEC 15064789 + 15064769 15064809 41 TCAACTGAGAAAATCTATATCCGGAAAGACCTGAGAAGTCC TCAACTGAGAAAATCTATATCTGGAAAGACCTGAGAAGTCC < 41bp 0.639709388427458 0.844021540061458 0.32960504 0.1720964 prediction 0.408624303268001 Functional Gain - NR2C2 ENSG00000177463 CDS Human protein_coding chr3:15064789 chr3:15064790 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_127595 0 0 1 0 2 NR2C2 chr3:15064854 5'GT 15064854 Upstream 65bp
chrX 153668786 153668786 1 + C A LUAD 153668785 + 153668765 153668805 41 TTGTACAGTGAGTCCCTGGCCCGGTATGGCAAGAGCCCATA TTGTACAGTGAGTCCCTGGCCAGGTATGGCAAGAGCCCATA < 41bp 0.649142050921389 0.853440662827983 0.03912303 0.8527515 prediction 0.408597223813187 Functional Gain - GDI1 ENSG00000203879 CDS Human protein_coding chrX:153668785 chrX:153668786 synonymous SNV . 0 22 hm5C_associated_SNPs_127604 0 0 1 0 2 GDI1 chrX:153668722 3'AG 153668722 Downstream 65bp
chrX 153668786 153668786 1 + C A LUAD 153668785 + 153668765 153668805 41 TTGTACAGTGAGTCCCTGGCCCGGTATGGCAAGAGCCCATA TTGTACAGTGAGTCCCTGGCCAGGTATGGCAAGAGCCCATA < 41bp 0.649142050921389 0.853440662827983 0.03912303 0.8527515 prediction 0.408597223813187 Functional Gain - GDI1 ENSG00000203879 CDS Human protein_coding chrX:153668785 chrX:153668786 synonymous SNV . 0 22 hm5C_associated_SNPs_127604 0 0 1 0 2 GDI1 chrX:153668853 5'GT 153668853 Upstream 68bp
chr5 72865483 72865483 1 + C T PRAD 72865482 + 72865462 72865502 41 GATGTGCTAGCAAACTTAATCCGGATCTCTTTATAACAGGT GATGTGCTAGCAAACTTAATCTGGATCTCTTTATAACAGGT < 41bp 0.608648486483907 0.812946664930368 0.55787206 0.6370025 prediction 0.408596356892922 Functional Gain - UTP15 ENSG00000164338 CDS Human protein_coding chr5:72865482 chr5:72865483 nonsynonymous SNV 0.968 0 22 hm5C_associated_SNPs_127606 0 0 1 0 1 UTP15 chr5:72865500 5'GT 72865500 Upstream 18bp
chr8 21890687 21890687 1 + T G UCEC 21890683 + 21890663 21890703 41 TTTCTCCCCCAGTTACTTTCCAGCTCCGGGCTGGCTCAGGA TTTCTCCCCCAGTTACTTTCCAGCGCCGGGCTGGCTCAGGA < 41bp 0.53771332820746 0.742007307754084 0.048546135 0.20005888 prediction 0.408587959093249 Functional Gain - NPM2 ENSG00000158806 CDS Human protein_coding chr8:21890683 chr8:21890687 nonsynonymous SNV 0.966 4 25 hm5C_associated_SNPs_127608 0 0 1 0 2 NPM2 chr8:21890641 3'AG 21890641 Downstream 47bp
chr8 21890687 21890687 1 + T G UCEC 21890683 + 21890663 21890703 41 TTTCTCCCCCAGTTACTTTCCAGCTCCGGGCTGGCTCAGGA TTTCTCCCCCAGTTACTTTCCAGCGCCGGGCTGGCTCAGGA < 41bp 0.53771332820746 0.742007307754084 0.048546135 0.20005888 prediction 0.408587959093249 Functional Gain - NPM2 ENSG00000158806 CDS Human protein_coding chr8:21890683 chr8:21890687 nonsynonymous SNV 0.966 4 25 hm5C_associated_SNPs_127608 0 0 1 0 2 NPM2 chr8:21890734 5'GT 21890734 Upstream 48bp
chr7 89884766 89884766 1 + T C SKCM 89884764 + 89884744 89884784 41 TCAAGCCTATGGACCTTAATCGTGTCATCAAACTCCTCGAA TCAAGCCTATGGACCTTAATCGCGTCATCAAACTCCTCGAA < 41bp 0.427389685003552 0.704293812595351 0.40179613 0.42621952 prediction 0.408587625190702 Functional Gain - CFAP69 ENSG00000105792 CDS Human protein_coding chr7:89884764 chr7:89884766 synonymous SNV . 0 23 hm5C_associated_SNPs_127609 0 0 0 1 2 CFAP69 chr7:89884737 3'AG 89884737 Downstream 30bp
chr7 89884766 89884766 1 + T C SKCM 89884764 + 89884744 89884784 41 TCAAGCCTATGGACCTTAATCGTGTCATCAAACTCCTCGAA TCAAGCCTATGGACCTTAATCGCGTCATCAAACTCCTCGAA < 41bp 0.427389685003552 0.704293812595351 0.40179613 0.42621952 prediction 0.408587625190702 Functional Gain - CFAP69 ENSG00000105792 CDS Human protein_coding chr7:89884764 chr7:89884766 synonymous SNV . 0 23 hm5C_associated_SNPs_127609 0 0 0 1 2 CFAP69 chr7:89884796 5'GT 89884796 Upstream 31bp
chr22 36123222 36123222 1 + C T SKCM 36123221 + 36123201 36123241 41 GGGCAGGGCTGTTCGAGGATCCCGTGTGGTTAAACCAGAAG GGGCAGGGCTGTTCGAGGATCTCGTGTGGTTAAACCAGAAG < 41bp 0.595001054309136 0.799292199574706 0.2726617 0.37313834 prediction 0.40858229053114 Functional Gain - APOL5 ENSG00000128313 CDS Human protein_coding chr22:36123221 chr22:36123222 synonymous SNV . 0 22 hm5C_associated_SNPs_127610 0 0 0 0 1 APOL5 chr22:36123241 5'GT 36123241 Upstream 20bp
chr8 36644850 36644850 1 + T C COAD 36644847 + 36644827 36644867 41 CTGTTCACATCAGGTACCATCGCTAGGAGCCATGTAAGAAG CTGTTCACATCAGGTACCATCGCCAGGAGCCATGTAAGAAG < 41bp 0.476893313147952 0.704289225915519 0.10249683 0.42307407 prediction 0.408578451831038 Functional Gain - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36644847 chr8:36644850 synonymous SNV . 0 24 hm5C_associated_SNPs_127612 0 0 0 0 2 KCNU1 chr8:36644824 3'AG 36644824 Downstream 27bp
chr8 36644850 36644850 1 + T C COAD 36644847 + 36644827 36644867 41 CTGTTCACATCAGGTACCATCGCTAGGAGCCATGTAAGAAG CTGTTCACATCAGGTACCATCGCCAGGAGCCATGTAAGAAG < 41bp 0.476893313147952 0.704289225915519 0.10249683 0.42307407 prediction 0.408578451831038 Functional Gain - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36644847 chr8:36644850 synonymous SNV . 0 24 hm5C_associated_SNPs_127612 0 0 0 0 2 KCNU1 chr8:36644943 5'GT 36644943 Upstream 94bp
chr3 48508185 48508185 1 + T C LIHC 48508183 + 48508163 48508203 41 CTGGCTGTCCACAGATGTGCCCTGGAGAGCCCCCCCACCTC CTGGCTGTCCACAGATGTGCCCCGGAGAGCCCCCCCACCTC < 41bp 0.449383793501438 0.704286424369392 0.33488125 0.4050297 prediction 0.408572848738785 Functional Gain - TREX1 ENSG00000213689 CDS Human protein_coding chr3:48508183 chr3:48508185 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_127613 0 0 0 0 1 TREX1 chr3:48508139 3'AG 48508139 Downstream 47bp
chr1 9027759 9027759 1 + C A UCEC 9027755 + 9027735 9027775 41 ACTGGCCTTGACGTTCAGGACATGCTGCCCAGGAACCTCCA ACTGGCCTTGACGTTCAGGACATGATGCCCAGGAACCTCCA < 41bp 0.286731164074362 0.704271961084445 0.023037791 0.023171127 prediction 0.408543922168891 Functional Gain - CA6 ENSG00000131686 CDS Human protein_coding chr1:9027755 chr1:9027759 nonsynonymous SNV 0.105 3 25 hm5C_associated_SNPs_127619 0 0 0 0 1 CA6 chr1:9027718 3'AG 9027718 Downstream 42bp
chr19 8495677 8495677 1 + C T SKCM 8495676 + 8495656 8495696 41 GCCCAGGACCACCTCCGGCTCCACAGCCAGCTGGAGGCCGT GCCCAGGACCACCTCCGGCTCTACAGCCAGCTGGAGGCCGT < 41bp 0.642059685416634 0.846330332140755 0.14444971 0.59379494 prediction 0.408541293448242 Functional Gain - MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8495676 chr19:8495677 nonsynonymous SNV 0.927 1 22 hm5C_associated_SNPs_127620 0 0 0 0 1 MARCH2 chr19:8495751 5'GT 8495751 Upstream 75bp
chr1 148932791 148932791 1 + T A LUSC 148932787 + 148932767 148932807 41 TGCTTTTCCTCCTCTGCAGACTGCTGGCCAGACCCCCAAGC TGCTTTTCCTCCTCTGCAGACTGCAGGCCAGACCCCCAAGC < 41bp 0.401494954150024 0.704270258687097 0.21802068 0.26658434 prediction 0.408540517374194 Functional Gain - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932787 chr1:148932791 . . 0 25 hm5C_associated_SNPs_127621 0 0 0 0 1 LOC645166 chr1:148932786 3'AG 148932786 Downstream 6bp
chr16 84495694 84495694 1 + C A HNSC 84495690 + 84495670 84495710 41 AGCTGGCGGTCATTTACATCCCCCCGCTGCAGAGGGTCTTC AGCTGGCGGTCATTTACATCCCCCAGCTGCAGAGGGTCTTC < 41bp 0.267683568326185 0.704268280701685 0.10239723 0.12083015 prediction 0.408536561403371 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84495690 chr16:84495694 nonsynonymous SNV 0.008 5 25 hm5C_associated_SNPs_127623 0 0 0 0 1 ATP2C2 chr16:84495735 5'GT 84495735 Upstream 42bp
chr22 26747161 26747161 1 + C A LUAD 26747157 + 26747137 26747177 41 AGTTCTCTTCTGACCTGCTACAGCCGTGAAACAGGGACTCC AGTTCTCTTCTGACCTGCTACAGCAGTGAAACAGGGACTCC < 41bp 0.289163079462935 0.704264261741152 0.39212006 0.6476647 prediction 0.408528523482305 Functional Gain - SEZ6L ENSG00000100095 CDS Human protein_coding chr22:26747157 chr22:26747161 nonsynonymous SNV 0.977 1 25 hm5C_associated_SNPs_127624 0 0 0 0 1 SEZ6L chr22:26747209 5'GT 26747209 Upstream 49bp
chr4 37836302 37836302 1 + T C rs3752683 37836299 + 37836279 37836319 41 AAGCAGAAAGGCATCGTGATCAGTTTTGACGCCCGAGCTCA AAGCAGAAAGGCATCGTGATCAGCTTTGACGCCCGAGCTCA < 41bp 0.506288574432194 0.710542117973487 0.13019606 0.2710037 prediction 0.408507087082586 Functional Gain - PGM2 ENSG00000169299 CDS Human protein_coding chr4:37836299 chr4:37836302 synonymous SNV . 0 24 hm5C_associated_SNPs_127628 0 0 1 0 2 PGM2 chr4:37836240 3'AG 37836240 Downstream 63bp
chr4 37836302 37836302 1 + T C rs3752683 37836299 + 37836279 37836319 41 AAGCAGAAAGGCATCGTGATCAGTTTTGACGCCCGAGCTCA AAGCAGAAAGGCATCGTGATCAGCTTTGACGCCCGAGCTCA < 41bp 0.506288574432194 0.710542117973487 0.13019606 0.2710037 prediction 0.408507087082586 Functional Gain - PGM2 ENSG00000169299 CDS Human protein_coding chr4:37836299 chr4:37836302 synonymous SNV . 0 24 hm5C_associated_SNPs_127628 0 0 1 0 2 PGM2 chr4:37836346 5'GT 37836346 Upstream 45bp
chr9 140034155 140034155 1 + C T SKCM 140034154 + 140034134 140034174 41 ACGCACAAGCCCAACGCCATCCAGATGGCTCTGTCGGTGTG ACGCACAAGCCCAACGCCATCTAGATGGCTCTGTCGGTGTG < 41bp 0.569999690691608 0.774248770017453 0.42907053 0.26683682 prediction 0.40849815865169 Functional Gain - GRIN1 ENSG00000176884 CDS Human protein_coding chr9:140034154 chr9:140034155 stopgain 1.000 0 22 hm5C_associated_SNPs_127632 0 0 0 0 1 GRIN1 chr9:140034196 5'GT 140034196 Upstream 42bp
chr7 150733677 150733677 1 + A G UCEC 150733674 + 150733654 150733694 41 ATTGGGGGCTCCCTTGTGGCCGGACAGCAGCTGACAGGGGG ATTGGGGGCTCCCTTGTGGCCGGGCAGCAGCTGACAGGGGG < 41bp 0.45421121621124 0.704248795998229 0.23209411 0.50505704 prediction 0.408497591996458 Functional Gain - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150733674 chr7:150733677 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_127633 0 0 1 0 1 ABCB8 chr7:150733631 3'AG 150733631 Downstream 47bp
chr4 68424645 68424645 1 + C T UCEC 68424644 + 68424624 68424664 41 TTAATCAAGCGGTCAGGATACCGGGTGAGTCTATAGATGAT TTAATCAAGCGGTCAGGATACTGGGTGAGTCTATAGATGAT < 41bp 0.542268822797748 0.746511937052503 0.7629218 0.6763998 prediction 0.40848622850951 Functional Gain - STAP1 ENSG00000035720 CDS Human protein_coding chr4:68424644 chr4:68424645 nonsynonymous SNV 0.228 1 22 hm5C_associated_SNPs_127635 0 0 0 0 1 STAP1 chr4:68424647 5'GT 68424647 Upstream 3bp
chr1 17715314 17715314 1 + C A SARC 17715313 + 17715293 17715333 41 TACAAAGACACGGTGGTGTTCCGGGTGGCTCCCTGTGTCTT TACAAAGACACGGTGGTGTTCAGGGTGGCTCCCTGTGTCTT < 41bp 0.638631532649708 0.842874013429576 0.9433507 0.9476708 prediction 0.408484961559735 Functional Gain - PADI6 ENSG00000256049 ncRNA_exonic Human other chr1:17715313 chr1:17715314 . . 0 22 hm5C_associated_SNPs_127636 0 0 0 0 2 PADI6 chr1:17715272 3'AG 17715272 Downstream 43bp
chr1 17715314 17715314 1 + C A SARC 17715313 + 17715293 17715333 41 TACAAAGACACGGTGGTGTTCCGGGTGGCTCCCTGTGTCTT TACAAAGACACGGTGGTGTTCAGGGTGGCTCCCTGTGTCTT < 41bp 0.638631532649708 0.842874013429576 0.9433507 0.9476708 prediction 0.408484961559735 Functional Gain - PADI6 ENSG00000256049 ncRNA_exonic Human other chr1:17715313 chr1:17715314 . . 0 22 hm5C_associated_SNPs_127636 0 0 0 0 2 PADI6 chr1:17715375 5'GT 17715375 Upstream 62bp
chr2 191550356 191550356 1 + A G rs556695533 191550353 + 191550333 191550373 41 CGGCTTGACTTCCGATAACTCAGATGGACAAGGTACATCTT CGGCTTGACTTCCGATAACTCAGGTGGACAAGGTACATCTT < 41bp 0.608018064773078 0.812252202475349 0.8834125 0.920794 prediction 0.408468275404543 Functional Gain - NAB1 ENSG00000138386 CDS Human protein_coding chr2:191550353 chr2:191550356 nonsynonymous SNV 0.931 1 24 hm5C_associated_SNPs_127638 0 0 0 0 1 NAB1 chr2:191550364 5'GT 191550364 Upstream 9bp
chr2 239010719 239010719 1 + T C rs36066915 239010716 + 239010696 239010736 41 GGAGCCCGGCCGCTGCACCACGCTGCCGTCAGTGGGGACCT GGAGCCCGGCCGCTGCACCACGCCGCCGTCAGTGGGGACCT < 41bp 0.540965606464023 0.745199537393796 0.3061018 0.369254 prediction 0.408467861859547 Functional Gain - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239010716 chr2:239010719 synonymous SNV . 0 24 hm5C_associated_SNPs_127639 0 0 0 0 1 ESPNL chr2:239010772 5'GT 239010772 Upstream 54bp
chr4 5733332 5733332 1 + A G STAD 5733329 + 5733309 5733349 41 CCACCAGCGATGACAGGTTTCTCAGCCGCACCTTCCTCCGG CCACCAGCGATGACAGGTTTCTCGGCCGCACCTTCCTCCGG < 41bp 0.451455575993114 0.704225010375158 0.24580404 0.37367058 prediction 0.408450020750316 Functional Gain - EVC ENSG00000072840 CDS Human protein_coding chr4:5733329 chr4:5733332 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_127641 0 0 1 0 1 EVC chr4:5733384 5'GT 5733384 Upstream 53bp
chr14 23312527 23312527 1 + C T BLCA 23312526 + 23312506 23312546 41 TGCCCTGGGGCTCGAGCATTCCAGTGACCCCTCGGCCATCA TGCCCTGGGGCTCGAGCATTCTAGTGACCCCTCGGCCATCA < 41bp 0.63617364215459 0.840391210091279 0.80649376 0.6336156 prediction 0.408435135873378 Functional Gain - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23312526 chr14:23312527 synonymous SNV . 0 22 hm5C_associated_SNPs_127644 0 0 0 0 1 MMP14 chr14:23312466 3'AG 23312466 Downstream 62bp
chr15 49574197 49574197 1 + A G UCEC 49574194 + 49574174 49574214 41 ACCTTTCCAGGTGGAACTTGCAGAAATCTGTGCCAAGAGTG ACCTTTCCAGGTGGAACTTGCAGGAATCTGTGCCAAGAGTG < 41bp 0.605134110775956 0.8093420012321 0.36196846 0.8683808 prediction 0.408415780912287 Functional Gain - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49574194 chr15:49574197 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_127647 0 0 1 3 2 GALK2 chr15:49574184 3'AG 49574184 Downstream 14bp
chr15 49574197 49574197 1 + A G UCEC 49574194 + 49574174 49574214 41 ACCTTTCCAGGTGGAACTTGCAGAAATCTGTGCCAAGAGTG ACCTTTCCAGGTGGAACTTGCAGGAATCTGTGCCAAGAGTG < 41bp 0.605134110775956 0.8093420012321 0.36196846 0.8683808 prediction 0.408415780912287 Functional Gain - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49574194 chr15:49574197 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_127647 0 0 1 3 2 GALK2 chr15:49574282 5'GT 49574282 Upstream 86bp
chr1 196953266 196953266 1 + T C rs140215003 196953263 + 196953243 196953283 41 ACTCCTCCCATATGCAGCTTCACTAGTAAGCAAAATACCAC ACTCCTCCCATATGCAGCTTCACCAGTAAGCAAAATACCAC < 41bp 0.533350215985069 0.737555538240664 0.037767142 0.036331713 prediction 0.408410644511191 Functional Gain - CFHR5 ENSG00000134389 CDS Human protein_coding chr1:196953263 chr1:196953266 synonymous SNV . 0 24 hm5C_associated_SNPs_127649 1 0 0 0 1 CFHR5 chr1:196953267 5'GT 196953267 Upstream 2bp
chr21 44182295 44182295 1 + T C UCEC 44182293 + 44182273 44182313 41 CCTTCCAGATCCTCGCCGAGCCTGAGTGCAACATCTTCTCC CCTTCCAGATCCTCGCCGAGCCCGAGTGCAACATCTTCTCC < 41bp 0.61147810176218 0.815679931456052 0.06929439 0.15109771 prediction 0.408403659387745 Functional Gain - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44182293 chr21:44182295 synonymous SNV . 0 23 hm5C_associated_SNPs_127652 0 0 0 0 1 PDE9A chr21:44182349 5'GT 44182349 Upstream 55bp
chr14 24839756 24839756 1 + C A rs2229310 24839752 + 24839732 24839772 41 CTACCTGGCAGTGCCCTCCCCACTCGCTTGGTCCAAGGCCC CTACCTGGCAGTGCCCTCCCCACTAGCTTGGTCCAAGGCCC < 41bp 0.331627531247868 0.704201041176884 0.17586339 0.14940232 prediction 0.408402082353768 Functional Gain - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24839752 chr14:24839756 synonymous SNV . 0 25 hm5C_associated_SNPs_127653 0 0 0 0 1 NFATC4 chr14:24839800 5'GT 24839800 Upstream 45bp
chr19 7830867 7830867 1 + C T SKCM 7830866 + 7830846 7830886 41 GGAGATCTACCAGGAGCTGACCCGGCTGAAGGCTGCAGTGG GGAGATCTACCAGGAGCTGACTCGGCTGAAGGCTGCAGTGG < 41bp 0.591621916947157 0.795818618380899 0.3537376 0.43290478 prediction 0.408393402867484 Functional Gain - CLEC4M ENSG00000104938 CDS Human protein_coding chr19:7830866 chr19:7830867 synonymous SNV . 0 22 hm5C_associated_SNPs_127657 0 0 0 0 1 CLEC4M chr19:7830955 5'GT 7830955 Upstream 89bp
chr21 47535811 47535811 1 + C T STAD 47535810 + 47535790 47535830 41 CCAAGGGCAACATGGGTGAGCCGGGAGAGCCTGGCCAGAAG CCAAGGGCAACATGGGTGAGCTGGGAGAGCCTGGCCAGAAG < 41bp 0.59757543214223 0.801764200568476 0.904435 0.8569983 prediction 0.408377536852492 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47535810 chr21:47535811 nonsynonymous SNV 0.933 4 22 hm5C_associated_SNPs_127660 0 0 0 0 1 COL6A2 chr21:47535839 5'GT 47535839 Upstream 29bp
chr1 153614822 153614822 1 + T C COAD 153614819 + 153614799 153614839 41 AATCGGAGGACGAGGCCTACCCATAATCCAGAGAGGCTTGC AATCGGAGGACGAGGCCTACCCACAATCCAGAGAGGCTTGC < 41bp 0.565998568718177 0.77018462554124 0.08589876 0.11818519 prediction 0.408372113646124 Functional Gain - CHTOP ENSG00000160679 CDS Human protein_coding chr1:153614819 chr1:153614822 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_127663 0 0 1 0 1 CHTOP chr1:153614905 5'GT 153614905 Upstream 84bp
chr16 14758878 14758878 1 + A G COAD 14758875 + 14758855 14758895 41 ATCATCAATGCTATGTTACTCTCAGTTCTGGAATTATTCTC ATCATCAATGCTATGTTACTCTCGGTTCTGGAATTATTCTC < 41bp 0.595665829242108 0.79984876601014 0.08340204 0.17214763 prediction 0.408365873536063 Functional Gain - BFAR ENSG00000103429 CDS Human protein_coding chr16:14758875 chr16:14758878 synonymous SNV . 0 24 hm5C_associated_SNPs_127668 0 0 1 0 1 BFAR chr16:14758928 5'GT 14758928 Upstream 51bp
chr6 130415458 130415458 1 + C A rs141824361 130415457 + 130415437 130415477 41 AACATGGTGGATGCTCAACCCCGGGATGTAAAGGGATTGGC AACATGGTGGATGCTCAACCCAGGGATGTAAAGGGATTGGC < 41bp 0.643879014054445 0.84805393625657 0.13691345 0.45763358 prediction 0.408349844404251 Functional Gain - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130415457 chr6:130415458 nonsynonymous SNV 0.097 2 22 hm5C_associated_SNPs_127671 0 0 1 0 2 L3MBTL3 chr6:130415410 3'AG 130415410 Downstream 49bp
chr6 130415458 130415458 1 + C A rs141824361 130415457 + 130415437 130415477 41 AACATGGTGGATGCTCAACCCCGGGATGTAAAGGGATTGGC AACATGGTGGATGCTCAACCCAGGGATGTAAAGGGATTGGC < 41bp 0.643879014054445 0.84805393625657 0.13691345 0.45763358 prediction 0.408349844404251 Functional Gain - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130415457 chr6:130415458 nonsynonymous SNV 0.097 2 22 hm5C_associated_SNPs_127671 0 0 1 0 2 L3MBTL3 chr6:130415512 5'GT 130415512 Upstream 55bp
chr17 61601589 61601589 1 + C T STAD 61601588 + 61601568 61601608 41 TGCGAACTCTTCGGCTACTCCCGAGTGGAGGTGATGCAGCA TGCGAACTCTTCGGCTACTCCTGAGTGGAGGTGATGCAGCA < 41bp 0.447545230229624 0.704171651496713 0.13560706 0.21551368 prediction 0.408343302993425 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61601588 chr17:61601589 stopgain 1.000 1 22 hm5C_associated_SNPs_127673 0 0 0 0 2 KCNH6 chr17:61601500 3'AG 61601500 Downstream 90bp
chr17 61601589 61601589 1 + C T STAD 61601588 + 61601568 61601608 41 TGCGAACTCTTCGGCTACTCCCGAGTGGAGGTGATGCAGCA TGCGAACTCTTCGGCTACTCCTGAGTGGAGGTGATGCAGCA < 41bp 0.447545230229624 0.704171651496713 0.13560706 0.21551368 prediction 0.408343302993425 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61601588 chr17:61601589 stopgain 1.000 1 22 hm5C_associated_SNPs_127673 0 0 0 0 2 KCNH6 chr17:61601597 5'GT 61601597 Upstream 9bp
chr4 187075718 187075718 1 + T G LUAD 187075714 + 187075694 187075734 41 AGGGGTTGCTGACCTAACGGCACGTTCATCCCTGGAAGAAG AGGGGTTGCTGACCTAACGGCACGGTCATCCCTGGAAGAAG < 41bp 0.526633097813999 0.730802238487018 0.09803146 0.21392685 prediction 0.408338281346037 Functional Gain - FAM149A ENSG00000109794 CDS Human protein_coding chr4:187075714 chr4:187075718 synonymous SNV . 0 25 hm5C_associated_SNPs_127675 0 0 0 0 2 FAM149A chr4:187075622 3'AG 187075622 Downstream 97bp
chr4 187075718 187075718 1 + T G LUAD 187075714 + 187075694 187075734 41 AGGGGTTGCTGACCTAACGGCACGTTCATCCCTGGAAGAAG AGGGGTTGCTGACCTAACGGCACGGTCATCCCTGGAAGAAG < 41bp 0.526633097813999 0.730802238487018 0.09803146 0.21392685 prediction 0.408338281346037 Functional Gain - FAM149A ENSG00000109794 CDS Human protein_coding chr4:187075714 chr4:187075718 synonymous SNV . 0 25 hm5C_associated_SNPs_127675 0 0 0 0 2 FAM149A chr4:187075792 5'GT 187075792 Upstream 75bp
chr3 130699469 130699469 1 + A G OV 130699466 + 130699446 130699486 41 TCCAAAACTTCCCAGTCAGTCTCAGGAGAAGAAATAGATGC TCCAAAACTTCCCAGTCAGTCTCGGGAGAAGAAATAGATGC < 41bp 0.539616612225911 0.743784114925976 0.008488387 0.0129727125 prediction 0.408335005400131 Functional Gain - ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130699466 chr3:130699469 synonymous SNV . 0 24 hm5C_associated_SNPs_127677 0 0 1 0 2 ATP2C1 chr3:130699426 3'AG 130699426 Downstream 44bp
chr3 130699469 130699469 1 + A G OV 130699466 + 130699446 130699486 41 TCCAAAACTTCCCAGTCAGTCTCAGGAGAAGAAATAGATGC TCCAAAACTTCCCAGTCAGTCTCGGGAGAAGAAATAGATGC < 41bp 0.539616612225911 0.743784114925976 0.008488387 0.0129727125 prediction 0.408335005400131 Functional Gain - ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130699466 chr3:130699469 synonymous SNV . 0 24 hm5C_associated_SNPs_127677 0 0 1 0 2 ATP2C1 chr3:130699523 5'GT 130699523 Upstream 55bp
chr1 22924262 22924262 1 + A G COAD 22924259 + 22924239 22924279 41 GGCCCTCAAAGCCGGCTACACGGAGAGACAGAGGCGGGACT GGCCCTCAAAGCCGGCTACACGGGGAGACAGAGGCGGGACT < 41bp 0.626534696927119 0.830698665411662 0.9258894 0.93953717 prediction 0.408327936969087 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22924259 chr1:22924262 nonsynonymous SNV 0.987 5 24 hm5C_associated_SNPs_127680 0 0 0 0 2 EPHA8 chr1:22924169 3'AG 22924169 Downstream 94bp
chr1 22924262 22924262 1 + A G COAD 22924259 + 22924239 22924279 41 GGCCCTCAAAGCCGGCTACACGGAGAGACAGAGGCGGGACT GGCCCTCAAAGCCGGCTACACGGGGAGACAGAGGCGGGACT < 41bp 0.626534696927119 0.830698665411662 0.9258894 0.93953717 prediction 0.408327936969087 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22924259 chr1:22924262 nonsynonymous SNV 0.987 5 24 hm5C_associated_SNPs_127680 0 0 0 0 2 EPHA8 chr1:22924354 5'GT 22924354 Upstream 93bp
chr19 12865526 12865526 1 + C T rs36032297 12865525 + 12865505 12865545 41 GCGCTACGCAGGGCTCTCGGCCGTGCTCATCCTGCGCTCCG GCGCTACGCAGGGCTCTCGGCTGTGCTCATCCTGCGCTCCG < 41bp 0.470507553305742 0.704160911713039 0.42793152 0.22354609 prediction 0.408321823426079 Functional Gain - BEST2 ENSG00000039987 CDS Human protein_coding chr19:12865525 chr19:12865526 synonymous SNV . 0 22 hm5C_associated_SNPs_127681 0 0 1 0 1 BEST2 chr19:12865599 5'GT 12865599 Upstream 74bp
chr1 228033727 228033727 1 + C T UCEC 228033726 + 228033706 228033746 41 ATTGGAATTGTGAGCTGGGGCCGAGGCTGCTCCAACCCTCT ATTGGAATTGTGAGCTGGGGCTGAGGCTGCTCCAACCCTCT < 41bp 0.487822914164871 0.704158830614769 0.5057146 0.4178455 prediction 0.408317661229538 Functional Gain - PRSS38 ENSG00000185888 CDS Human protein_coding chr1:228033726 chr1:228033727 stopgain 0.529 0 22 hm5C_associated_SNPs_127683 0 0 0 0 1 PRSS38 chr1:228033655 3'AG 228033655 Downstream 73bp
chr20 36979265 36979265 1 + T C rs2232582 36979263 + 36979243 36979283 41 ACTCTGCGCTGAGGCCTGTCCCTGGCCAGGGCCTGAGTCTC ACTCTGCGCTGAGGCCTGTCCCCGGCCAGGGCCTGAGTCTC < 41bp 0.436700972189955 0.704156609811249 0.10311964 0.32381466 prediction 0.408313219622498 Functional Gain - LBP ENSG00000129988 CDS Human protein_coding chr20:36979263 chr20:36979265 synonymous SNV . 0 23 hm5C_associated_SNPs_127685 0 0 0 0 2 LBP chr20:36979214 3'AG 36979214 Downstream 52bp
chr20 36979265 36979265 1 + T C rs2232582 36979263 + 36979243 36979283 41 ACTCTGCGCTGAGGCCTGTCCCTGGCCAGGGCCTGAGTCTC ACTCTGCGCTGAGGCCTGTCCCCGGCCAGGGCCTGAGTCTC < 41bp 0.436700972189955 0.704156609811249 0.10311964 0.32381466 prediction 0.408313219622498 Functional Gain - LBP ENSG00000129988 CDS Human protein_coding chr20:36979263 chr20:36979265 synonymous SNV . 0 23 hm5C_associated_SNPs_127685 0 0 0 0 2 LBP chr20:36979342 5'GT 36979342 Upstream 78bp
chr3 178174944 178174944 1 + C A rs2291479 178174943 + 178174923 178174963 41 GCCCCAATGCTGAGCTCAGACCACAACCGAATCCAGAGCCT GCCCCAATGCTGAGCTCAGACAACAACCGAATCCAGAGCCT < 41bp 0.46587129352335 0.704154468658253 0.13235432 0.09784651 prediction 0.408308937316507 Functional Gain - LINC01014 ENSG00000223941 ncRNA_exonic Human sense_intronic chr3:178174943 chr3:178174944 . . 0 22 hm5C_associated_SNPs_127687 0 1 0 0 1 LINC01014 chr3:178174882 3'AG 178174882 Downstream 63bp
chr17 20747435 20747435 1 + C G rs531308642 20747431 + 20747411 20747451 41 TGATCGACTTCTCGCACGGGCTGGCGCTCTACGAGCGCTGC TGATCGACTTCTCGCACGGGCTGGGGCTCTACGAGCGCTGC < 41bp 0.66281047665062 0.866963382980127 0.18956059 0.4889714 prediction 0.408305812659015 Functional Gain - LOC100287072;CCDC144NL ENSG00000226981 ncRNA_exonic Human unprocessed_pseudogene chr17:20747431 chr17:20747435 . . 0 25 hm5C_associated_SNPs_127688 0 0 0 0 1 LOC100287072;CCDC144NL chr17:20747349 3'AG 20747349 Downstream 87bp
chr11 120180267 120180267 1 + T C rs149496403 120180265 + 120180245 120180285 41 AACTGCCCTGTGGCCACACCCATCAAACCACCTGTCTACAA AACTGCCCTGTGGCCACACCCACCAAACCACCTGTCTACAA < 41bp 0.676549258333786 0.88069687275557 0.33610976 0.23868987 prediction 0.408295228843569 Functional Gain - POU2F3 ENSG00000137709 CDS Human protein_coding chr11:120180265 chr11:120180267 nonsynonymous SNV 0.980 0 23 hm5C_associated_SNPs_127690 0 0 0 0 1 POU2F3 chr11:120180295 5'GT 120180295 Upstream 29bp
chr19 11725659 11725659 1 + C T CESC 11725658 + 11725638 11725678 41 TTAGGAAAACAATGGGAAGACCAGAACATTGAAGACCCATT TTAGGAAAACAATGGGAAGACTAGAACATTGAAGACCCATT < 41bp 0.472265582479826 0.704137898762683 0.17090893 0.2992121 prediction 0.408275797525365 Functional Gain - ZNF627 ENSG00000198551 CDS Human protein_coding chr19:11725658 chr19:11725659 stopgain 0.078 0 22 hm5C_associated_SNPs_127696 0 0 1 0 2 ZNF627 chr19:11725642 3'AG 11725642 Downstream 18bp
chr19 11725659 11725659 1 + C T CESC 11725658 + 11725638 11725678 41 TTAGGAAAACAATGGGAAGACCAGAACATTGAAGACCCATT TTAGGAAAACAATGGGAAGACTAGAACATTGAAGACCCATT < 41bp 0.472265582479826 0.704137898762683 0.17090893 0.2992121 prediction 0.408275797525365 Functional Gain - ZNF627 ENSG00000198551 CDS Human protein_coding chr19:11725658 chr19:11725659 stopgain 0.078 0 22 hm5C_associated_SNPs_127696 0 0 1 0 2 ZNF627 chr19:11725702 5'GT 11725702 Upstream 44bp
chr1 156878099 156878099 1 + C G COAD 156878095 + 156878075 156878115 41 GCTTCTACGGTCTCAGCTGCCAGGCCCCCTGCACCTGCGAC GCTTCTACGGTCTCAGCTGCCAGGGCCCCTGCACCTGCGAC < 41bp 0.678305804106045 0.882431854123003 0.69942975 0.91785085 prediction 0.408252100033916 Functional Gain - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156878095 chr1:156878099 nonsynonymous SNV 0.787 0 25 hm5C_associated_SNPs_127700 0 0 0 0 1 PEAR1 chr1:156878132 5'GT 156878132 Upstream 34bp
chr1 17559428 17559428 1 + C G LUSC 17559427 + 17559407 17559447 41 ACGGTGGGCGGCACGGAATACCCCCTGGGCCGGATCCTCAT ACGGTGGGCGGCACGGAATACGCCCTGGGCCGGATCCTCAT < 41bp 0.380351750526483 0.70412503738392 0.057192057 0.14672565 prediction 0.408250074767841 Functional Gain - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17559427 chr1:17559428 nonsynonymous SNV 0.820 4 22 hm5C_associated_SNPs_127702 0 0 0 0 1 PADI1 chr1:17559465 5'GT 17559465 Upstream 38bp
chr12 57908595 57908595 1 + T G ACC 57908593 + 57908573 57908613 41 CGCCTGCTGGCCCATGTCACCCTGGAGCTCCAGCACTATCA CGCCTGCTGGCCCATGTCACCCGGGAGCTCCAGCACTATCA < 41bp 0.336830756893606 0.70412382414993 0.096886516 0.9229134 prediction 0.40824764829986 Functional Gain - MARS ENSG00000166986 CDS Human protein_coding chr12:57908593 chr12:57908595 nonsynonymous SNV 0.844 0 23 hm5C_associated_SNPs_127703 0 0 1 0 2 MARS chr12:57908503 3'AG 57908503 Downstream 93bp
chr12 57908595 57908595 1 + T G ACC 57908593 + 57908573 57908613 41 CGCCTGCTGGCCCATGTCACCCTGGAGCTCCAGCACTATCA CGCCTGCTGGCCCATGTCACCCGGGAGCTCCAGCACTATCA < 41bp 0.336830756893606 0.70412382414993 0.096886516 0.9229134 prediction 0.40824764829986 Functional Gain - MARS ENSG00000166986 CDS Human protein_coding chr12:57908593 chr12:57908595 nonsynonymous SNV 0.844 0 23 hm5C_associated_SNPs_127703 0 0 1 0 2 MARS chr12:57908634 5'GT 57908634 Upstream 40bp
chr1 196749088 196749088 1 + A G UCEC 196749085 + 196749065 196749105 41 AGAAAGGCTGGTCTCCTACTCCCAGATGCATCCGTGTCAGT AGAAAGGCTGGTCTCCTACTCCCGGATGCATCCGTGTCAGT < 41bp 0.459276931216878 0.704118472678351 0.12337437 0.5293865 prediction 0.408236945356702 Functional Gain - CFHR3 ENSG00000116785 CDS Human protein_coding chr1:196749085 chr1:196749088 nonsynonymous SNV 0.005 2 24 hm5C_associated_SNPs_127705 0 0 0 0 1 CFHR3 chr1:196749103 5'GT 196749103 Upstream 16bp
chr17 46133882 46133882 1 + C T STAD 46133881 + 46133861 46133901 41 AGATGGAGGCGAGCAGGACACCTGGGCAGGCGAGGGCGCGG AGATGGAGGCGAGCAGGACACTTGGGCAGGCGAGGGCGCGG < 41bp 0.624394667179004 0.828512979448605 0.37042993 0.6786955 prediction 0.408236624539202 Functional Gain - NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46133881 chr17:46133882 synonymous SNV . 0 22 hm5C_associated_SNPs_127706 0 0 1 0 1 NFE2L1 chr17:46133960 5'GT 46133960 Upstream 79bp
chr20 1145057 1145057 1 + C T SKCM 1145056 + 1145036 1145076 41 GCCTCCCGAACCGACTTCCTCCAGGCGCTGTGCCCCCAGGA GCCTCCCGAACCGACTTCCTCTAGGCGCTGTGCCCCCAGGA < 41bp 0.638862920716453 0.842976617284731 0.94726884 0.87005097 prediction 0.408227393136555 Functional Gain - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1145056 chr20:1145057 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_127707 0 0 1 0 2 PSMF1 chr20:1144962 3'AG 1144962 Downstream 96bp
chr20 1145057 1145057 1 + C T SKCM 1145056 + 1145036 1145076 41 GCCTCCCGAACCGACTTCCTCCAGGCGCTGTGCCCCCAGGA GCCTCCCGAACCGACTTCCTCTAGGCGCTGTGCCCCCAGGA < 41bp 0.638862920716453 0.842976617284731 0.94726884 0.87005097 prediction 0.408227393136555 Functional Gain - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1145056 chr20:1145057 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_127707 0 0 1 0 2 PSMF1 chr20:1145120 5'GT 1145120 Upstream 64bp
chr11 64032574 64032574 1 + C T BLCA 64032573 + 64032553 64032593 41 CCAGCACCTCCCTCAGCAGCCCAGGTAAGGAGTGGCCTGGG CCAGCACCTCCCTCAGCAGCCTAGGTAAGGAGTGGCCTGGG < 41bp 0.467631241966314 0.704105214571664 0.92314184 0.884622 prediction 0.408210429143327 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64032573 chr11:64032574 nonsynonymous SNV 0.969 1 22 hm5C_associated_SNPs_127709 0 0 0 0 1 PLCB3 chr11:64032576 5'GT 64032576 Upstream 3bp
chr14 60582090 60582090 1 + C T COAD 60582089 + 60582069 60582109 41 TTTTCCGAAATCCCTTTTATCCGAAGGATGTGCAAACTGTG TTTTCCGAAATCCCTTTTATCTGAAGGATGTGCAAACTGTG < 41bp 0.451799546861593 0.704093359486352 0.86221945 0.3267231 prediction 0.408186718972703 Functional Gain - PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60582089 chr14:60582090 nonsynonymous SNV 0.961 3 22 hm5C_associated_SNPs_127710 0 0 1 0 1 PCNX4 chr14:60582179 5'GT 60582179 Upstream 90bp
chr12 6634817 6634817 1 + C T rs71579347 6634816 + 6634796 6634836 41 GCTGCTGTGGGAGCGGGCCACCGAGAAGGTCGCCTGCTGTC GCTGCTGTGGGAGCGGGCCACTGAGAAGGTCGCCTGCTGTC < 41bp 0.449161626788248 0.704092772586793 0.7720191 0.888669 prediction 0.408185545173586 Functional Gain - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6634816 chr12:6634817 synonymous SNV . 0 22 hm5C_associated_SNPs_127711 0 0 1 0 2 NCAPD2 chr12:6634749 3'AG 6634749 Downstream 69bp
chr12 6634817 6634817 1 + C T rs71579347 6634816 + 6634796 6634836 41 GCTGCTGTGGGAGCGGGCCACCGAGAAGGTCGCCTGCTGTC GCTGCTGTGGGAGCGGGCCACTGAGAAGGTCGCCTGCTGTC < 41bp 0.449161626788248 0.704092772586793 0.7720191 0.888669 prediction 0.408185545173586 Functional Gain - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6634816 chr12:6634817 synonymous SNV . 0 22 hm5C_associated_SNPs_127711 0 0 1 0 2 NCAPD2 chr12:6634882 5'GT 6634882 Upstream 66bp
chr1 110594441 110594441 1 + T C UCEC 110594439 + 110594419 110594459 41 CGGCAGTGGCGAAAGAGCAACATGAAGACCATGTCTGCCAT CGGCAGTGGCGAAAGAGCAACACGAAGACCATGTCTGCCAT < 41bp 0.672751369599061 0.876840640838377 0.2559807 0.27745286 prediction 0.408178542478632 Functional Gain - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110594439 chr1:110594441 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_127712 0 0 0 0 1 STRIP1 chr1:110594509 5'GT 110594509 Upstream 69bp
chr22 51237176 51237176 1 + C T ESCA 51237175 + 51237155 51237195 41 AAGGCAGTGTTGAAAGGTGTCCGCAGCCACACGCAAAAAAG AAGGCAGTGTTGAAAGGTGTCTGCAGCCACACGCAAAAAAG < 41bp 0.596872360350745 0.800959701440617 0.12288654 0.34202597 prediction 0.408174682179746 Functional Gain - RPL23AP82 ENSG00000184319 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:51237175 chr22:51237176 . . 0 22 hm5C_associated_SNPs_127715 0 0 0 1 1 RPL23AP82 chr22:51237083 3'AG 51237083 Downstream 94bp
chr1 40758147 40758147 1 + C T LUAD 40758146 + 40758126 40758166 41 TTTTGCCTAACAGTCCTAAGCCGCAGATTTGAGTTTCAAGC TTTTGCCTAACAGTCCTAAGCTGCAGATTTGAGTTTCAAGC < 41bp 0.600150447262958 0.804232637688709 0.13938236 0.073881984 prediction 0.408164380851502 Functional Gain - ZMPSTE24 ENSG00000084073 CDS Human protein_coding chr1:40758146 chr1:40758147 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_127717 0 0 1 0 1 ZMPSTE24 chr1:40758117 3'AG 40758117 Downstream 31bp
chr1 151509340 151509340 1 + C T rs138636862 151509339 + 151509319 151509359 41 GGTCAATGAACAGCTCCAGGCCCGGATCAAGTCTCTGGAGA GGTCAATGAACAGCTCCAGGCTCGGATCAAGTCTCTGGAGA < 41bp 0.443673183059059 0.704078160152638 0.10671401 0.1829825 prediction 0.408156320305275 Functional Gain - CGN ENSG00000143375 CDS Human protein_coding chr1:151509339 chr1:151509340 synonymous SNV . 0 22 hm5C_associated_SNPs_127719 0 0 0 0 1 CGN chr1:151509369 5'GT 151509369 Upstream 30bp
chr1 94057828 94057828 1 - G A SKCM 94057829 - 94057809 94057849 41 CTGGTACCACGGCCGCATCCCCCGACAGGTACCTGGTCTTG CTGGTACCACGGCCGCATCCCTCGACAGGTACCTGGTCTTG < 41bp 0.650334282945875 0.854411059127164 0.12303826 0.51981014 prediction 0.408153552362577 Functional Gain - BCAR3 ENSG00000137936 CDS Human protein_coding chr1:94057829 chr1:94057828 synonymous SNV . 0 22 hm5C_associated_SNPs_127720 0 0 0 0 1 BCAR3 chr1:94057822 5'GT 94057822 Upstream 7bp
chr21 40768841 40768841 1 + T C rs117922305 40768838 + 40768818 40768858 41 TTAGTCTGTAACAAAGTTGTCGCTATTGTGCTTCATCCGTT TTAGTCTGTAACAAAGTTGTCGCCATTGTGCTTCATCCGTT < 41bp 0.540720072970057 0.744791014527439 0.045996815 0.393864 prediction 0.408141883114763 Functional Gain - WRB ENSG00000182093 CDS Human protein_coding chr21:40768838 chr21:40768841 synonymous SNV . 0 24 hm5C_associated_SNPs_127722 0 0 1 0 1 WRB chr21:40768792 3'AG 40768792 Downstream 50bp
chr3 186386822 186386822 1 + C T SKCM 186386821 + 186386801 186386841 41 TGACTGTGAGCCACCTGATTCCAGACGTCCATCTGAAATAG TGACTGTGAGCCACCTGATTCTAGACGTCCATCTGAAATAG < 41bp 0.61652318568528 0.820591332568535 0.324879 0.22408572 prediction 0.408136293766511 Functional Gain - HRG ENSG00000113905 CDS Human protein_coding chr3:186386821 chr3:186386822 synonymous SNV . 0 22 hm5C_associated_SNPs_127724 0 0 0 0 2 HRG chr3:186386724 3'AG 186386724 Downstream 99bp
chr3 186386822 186386822 1 + C T SKCM 186386821 + 186386801 186386841 41 TGACTGTGAGCCACCTGATTCCAGACGTCCATCTGAAATAG TGACTGTGAGCCACCTGATTCTAGACGTCCATCTGAAATAG < 41bp 0.61652318568528 0.820591332568535 0.324879 0.22408572 prediction 0.408136293766511 Functional Gain - HRG ENSG00000113905 CDS Human protein_coding chr3:186386821 chr3:186386822 synonymous SNV . 0 22 hm5C_associated_SNPs_127724 0 0 0 0 2 HRG chr3:186386840 5'GT 186386840 Upstream 19bp
chrX 16838317 16838317 1 + T G STAD 16838314 + 16838294 16838334 41 AGTTTTATTACTGATGCAAGCCCTAAACACCCTTTCAACCC AGTTTTATTACTGATGCAAGCCCGAAACACCCTTTCAACCC < 41bp 0.319748101113746 0.704065742997899 0.06991926 0.096612215 prediction 0.408131485995799 Functional Gain - TXLNG ENSG00000086712 CDS Human protein_coding chrX:16838314 chrX:16838317 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_127726 0 0 1 0 2 TXLNG chrX:16838287 3'AG 16838287 Downstream 31bp
chrX 16838317 16838317 1 + T G STAD 16838314 + 16838294 16838334 41 AGTTTTATTACTGATGCAAGCCCTAAACACCCTTTCAACCC AGTTTTATTACTGATGCAAGCCCGAAACACCCTTTCAACCC < 41bp 0.319748101113746 0.704065742997899 0.06991926 0.096612215 prediction 0.408131485995799 Functional Gain - TXLNG ENSG00000086712 CDS Human protein_coding chrX:16838314 chrX:16838317 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_127726 0 0 1 0 2 TXLNG chrX:16838378 5'GT 16838378 Upstream 62bp
chr15 82564081 82564081 1 + T C rs190958876 82564078 + 82564058 82564098 41 GTATAAAGTGCAGCCTGTGGCAATAGTCCGGCCTTTGGAGA GTATAAAGTGCAGCCTGTGGCAACAGTCCGGCCTTTGGAGA < 41bp 0.530966246590546 0.735030886058268 0.30455923 0.2747278 prediction 0.408129278935445 Functional Gain - SAXO2 ENSG00000188659 CDS Human protein_coding chr15:82564078 chr15:82564081 nonsynonymous SNV 0.942 0 24 hm5C_associated_SNPs_127727 0 0 0 0 1 SAXO2 chr15:82564143 5'GT 82564143 Upstream 63bp
chr12 98993848 98993848 1 + C A PRAD 98993847 + 98993827 98993867 41 AAGTTTGTGGTTCCTAAGCCCCGCAGTGAATGTTCAAAGCC AAGTTTGTGGTTCCTAAGCCCAGCAGTGAATGTTCAAAGCC < 41bp 0.627596868819295 0.831659916961543 0.31025803 0.44269836 prediction 0.408126096284497 Functional Gain - SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98993847 chr12:98993848 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_127728 0 0 1 0 1 SLC25A3 chr12:98993905 5'GT 98993905 Upstream 58bp
chr17 61558951 61558951 1 + C T rs35141294 61558950 + 61558930 61558970 41 TGGAACGCCACGCACATGTTCCGGGTGGCAGAGGAGTTCTT TGGAACGCCACGCACATGTTCTGGGTGGCAGAGGAGTTCTT < 41bp 0.46653949288789 0.704057906043242 0.89444315 0.71479386 prediction 0.408115812086485 Functional Gain - ACE ENSG00000159640 CDS Human protein_coding chr17:61558950 chr17:61558951 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_127730 1 0 0 0 1 ACE chr17:61558927 3'AG 61558927 Downstream 25bp
chr3 30715667 30715667 1 + T C STAD 30715665 + 30715645 30715685 41 AATTTGGAGAATGTTGAGTCCTTCAAGCAGACCGATGTCTA AATTTGGAGAATGTTGAGTCCTCCAAGCAGACCGATGTCTA < 41bp 0.382075789949077 0.704050233216606 0.25995392 0.95853007 prediction 0.408100466433212 Functional Gain - TGFBR2 ENSG00000163513 CDS Human protein_coding chr3:30715665 chr3:30715667 nonsynonymous SNV 0.995 5 23 hm5C_associated_SNPs_127734 0 0 1 0 2 TGFBR2 chr3:30715597 3'AG 30715597 Downstream 71bp
chr3 30715667 30715667 1 + T C STAD 30715665 + 30715645 30715685 41 AATTTGGAGAATGTTGAGTCCTTCAAGCAGACCGATGTCTA AATTTGGAGAATGTTGAGTCCTCCAAGCAGACCGATGTCTA < 41bp 0.382075789949077 0.704050233216606 0.25995392 0.95853007 prediction 0.408100466433212 Functional Gain - TGFBR2 ENSG00000163513 CDS Human protein_coding chr3:30715665 chr3:30715667 nonsynonymous SNV 0.995 5 23 hm5C_associated_SNPs_127734 0 0 1 0 2 TGFBR2 chr3:30715738 5'GT 30715738 Upstream 72bp
chr12 120114475 120114475 1 + C T PAAD 120114474 + 120114454 120114494 41 GAACAAGGACACGGGGATTTCCGTAAGTATGTGGGCATCTG GAACAAGGACACGGGGATTTCTGTAAGTATGTGGGCATCTG < 41bp 0.630720522117442 0.834762593517461 0.19263384 0.16162097 prediction 0.408084142800039 Functional Gain - PRKAB1 ENSG00000111725 CDS Human protein_coding chr12:120114474 chr12:120114475 synonymous SNV . 0 22 hm5C_associated_SNPs_127736 0 0 1 0 1 PRKAB1 chr12:120114475 5'GT 120114475 Upstream 1bp
chr9 138441743 138441743 1 + C T SARC 138441742 + 138441722 138441762 41 CAGACACAGAGCCCGGACCACCTGGACCTACCCTCCAGCCA CAGACACAGAGCCCGGACCACTTGGACCTACCCTCCAGCCA < 41bp 0.574774971144862 0.77881623631958 0.15586272 0.06066549 prediction 0.408082530349436 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138441742 chr9:138441743 synonymous SNV 0.013 0 22 hm5C_associated_SNPs_127739 0 0 0 2 1 OBP2A chr9:138441683 3'AG 138441683 Downstream 61bp
chr3 40231382 40231382 1 + C T SKCM 40231381 + 40231361 40231401 41 CTGAAGGATGGCGCTCCACCCCCCACCCGACTACTGGCCAA CTGAAGGATGGCGCTCCACCCTCCACCCGACTACTGGCCAA < 41bp 0.643361421136284 0.847388095109493 0.12302154 0.94222057 prediction 0.408053347946419 Functional Gain - MYRIP ENSG00000170011 CDS Human protein_coding chr3:40231381 chr3:40231382 nonsynonymous SNV 0.224 0 22 hm5C_associated_SNPs_127744 0 0 0 0 1 MYRIP chr3:40231317 3'AG 40231317 Downstream 66bp
chr6 44116270 44116270 1 + T C STAD 44116268 + 44116248 44116288 41 AGCATCCTGAAGGACTTCAACGTGTGTAAATGCCAGGGCTG AGCATCCTGAAGGACTTCAACGCGTGTAAATGCCAGGGCTG < 41bp 0.44064867958581 0.704025249464161 0.41953695 0.3969909 prediction 0.408050498928322 Functional Gain - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116268 chr6:44116270 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_127745 0 0 1 0 1 TMEM63B chr6:44116250 3'AG 44116250 Downstream 21bp
chr9 35751280 35751280 1 + T G PRAD 35751277 + 35751257 35751297 41 CTCTAGGCCTTCAGGATGTCCGGTTTCCCCAGGATGAGGCT CTCTAGGCCTTCAGGATGTCCGGGTTCCCCAGGATGAGGCT < 41bp 0.294894501213308 0.70401390691119 0.17935997 0.70182604 prediction 0.408027813822381 Functional Gain - RGP1 ENSG00000107185 CDS Human protein_coding chr9:35751277 chr9:35751280 nonsynonymous SNV 0.829 1 24 hm5C_associated_SNPs_127750 0 0 1 0 1 RGP1 chr9:35751263 3'AG 35751263 Downstream 18bp
chr19 34935921 34935921 1 + C T STAD 34935920 + 34935900 34935940 41 TATAGGGGAACCAACGGAAGCCGAAGCCAGAGCTAGAGCAT TATAGGGGAACCAACGGAAGCTGAAGCCAGAGCTAGAGCAT < 41bp 0.456509407516415 0.704012161554334 0.09756434 0.10359529 prediction 0.408024323108668 Functional Gain - UBA2 ENSG00000126261 CDS Human protein_coding chr19:34935920 chr19:34935921 synonymous SNV . 0 22 hm5C_associated_SNPs_127751 0 0 1 0 1 UBA2 chr19:34935905 3'AG 34935905 Downstream 17bp
chr1 117561116 117561116 1 + T C rs34882009 117561113 + 117561093 117561133 41 AAGTTTATGACAGAAATTCCCTATACAACAACCGCCCCCCG AAGTTTATGACAGAAATTCCCTACACAACAACCGCCCCCCG < 41bp 0.558252843150026 0.762264881890455 0.06630513 0.09569669 prediction 0.408024077480859 Functional Gain - CD101 ENSG00000134256 CDS Human protein_coding chr1:117561113 chr1:117561116 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_127752 0 0 0 0 1 CD101 chr1:117561182 5'GT 117561182 Upstream 67bp
chr9 90296516 90296516 1 + T A COAD 90296512 + 90296492 90296532 41 CACCAACTCCAGCAGGTTCCCACCTTCACCCCTGGCTTCTA CACCAACTCCAGCAGGTTCCCACCATCACCCCTGGCTTCTA < 41bp 0.347185750566814 0.703988803061749 0.04342401 0.04202655 prediction 0.407977606123498 Functional Gain - DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90296512 chr9:90296516 synonymous SNV . 0 25 hm5C_associated_SNPs_127765 0 0 1 0 1 DAPK1 chr9:90296541 5'GT 90296541 Upstream 26bp
chr10 118639398 118639398 1 + C T COAD 118639397 + 118639377 118639417 41 CAGGCTGTTGGGCTTGGTGTCCGGTTCATCAAGTTGGGGGG CAGGCTGTTGGGCTTGGTGTCTGGTTCATCAAGTTGGGGGG < 41bp 0.45739029766515 0.703986834668162 0.50508124 0.33557713 prediction 0.407973669336323 Functional Gain - ENO4 ENSG00000188316 CDS Human protein_coding chr10:118639397 chr10:118639398 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_127766 0 0 0 0 2 ENO4 chr10:118639380 3'AG 118639380 Downstream 19bp
chr10 118639398 118639398 1 + C T COAD 118639397 + 118639377 118639417 41 CAGGCTGTTGGGCTTGGTGTCCGGTTCATCAAGTTGGGGGG CAGGCTGTTGGGCTTGGTGTCTGGTTCATCAAGTTGGGGGG < 41bp 0.45739029766515 0.703986834668162 0.50508124 0.33557713 prediction 0.407973669336323 Functional Gain - ENO4 ENSG00000188316 CDS Human protein_coding chr10:118639397 chr10:118639398 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_127766 0 0 0 0 2 ENO4 chr10:118639497 5'GT 118639497 Upstream 100bp
chr10 29599985 29599985 1 + C T SKCM 29599984 + 29599964 29600004 41 GAAAAAAGGCTGTGAGGTTTCCTAAACTGGAACTGGACCCA GAAAAAAGGCTGTGAGGTTTCTTAAACTGGAACTGGACCCA < 41bp 0.465885020155668 0.703986706195814 0.22112796 0.26999927 prediction 0.407973412391629 Functional Gain - LYZL1 ENSG00000120563 CDS Human protein_coding chr10:29599984 chr10:29599985 synonymous SNV . 0 22 hm5C_associated_SNPs_127767 0 0 0 0 1 LYZL1 chr10:29599919 3'AG 29599919 Downstream 67bp
chr3 52538856 52538856 1 + C T LUAD 52538855 + 52538835 52538875 41 ACGAAGGTGGTGGACGCTGGCCGGGCAGGAGATCACCGTCA ACGAAGGTGGTGGACGCTGGCTGGGCAGGAGATCACCGTCA < 41bp 0.480939938823977 0.703974552721409 0.35039318 0.12661678 prediction 0.407949105442818 Functional Gain - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52538855 chr3:52538856 synonymous SNV . 0 22 hm5C_associated_SNPs_127771 0 0 0 0 1 STAB1 chr3:52538892 5'GT 52538892 Upstream 37bp
chr9 101818651 101818651 1 + C A LUAD 101818650 + 101818630 101818670 41 ATCCTGGGCCACCGGGGCCCCCGGGGCCACCAGGACCTCCA ATCCTGGGCCACCGGGGCCCCAGGGGCCACCAGGACCTCCA < 41bp 0.647638717618686 0.851612268015676 0.9359894 0.93903995 prediction 0.40794710079398 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101818650 chr9:101818651 nonsynonymous SNV 0.572 3 22 hm5C_associated_SNPs_127772 0 0 0 0 1 COL15A1 chr9:101818686 5'GT 101818686 Upstream 36bp
chr4 170634408 170634408 1 + A G rs1010713 170634405 + 170634385 170634425 41 GAGATCGTGGTGGATATTTTCCGAAAGCTGGGACTGAGGCA GAGATCGTGGTGGATATTTTCCGGAAGCTGGGACTGAGGCA < 41bp 0.595791798182756 0.799761606288491 0.26952332 0.84950256 prediction 0.407939616211471 Functional Gain - CLCN3 ENSG00000109572 CDS Human protein_coding chr4:170634405 chr4:170634408 synonymous SNV . 0 24 hm5C_associated_SNPs_127773 0 0 1 0 1 CLCN3 chr4:170634446 5'GT 170634446 Upstream 39bp
chr1 16355271 16355271 1 + C T LUSC 16355270 + 16355250 16355290 41 CCACAGCAAGCCTGTGTACTCCGCTCTGGCCACCTTGCTTC CCACAGCAAGCCTGTGTACTCTGCTCTGGCCACCTTGCTTC < 41bp 0.599060261188865 0.803025733180419 0.23686168 0.2420173 prediction 0.407930943983107 Functional Gain - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16355270 chr1:16355271 synonymous SNV . 0 22 hm5C_associated_SNPs_127775 0 0 0 0 3 CLCNKA chr1:16355215 3'AG 16355215 Downstream 57bp
chr1 16355271 16355271 1 + C T LUSC 16355270 + 16355250 16355290 41 CCACAGCAAGCCTGTGTACTCCGCTCTGGCCACCTTGCTTC CCACAGCAAGCCTGTGTACTCTGCTCTGGCCACCTTGCTTC < 41bp 0.599060261188865 0.803025733180419 0.23686168 0.2420173 prediction 0.407930943983107 Functional Gain - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16355270 chr1:16355271 synonymous SNV . 0 22 hm5C_associated_SNPs_127775 0 0 0 0 3 CLCNKA chr1:16355256 3'AG 16355256 Downstream 16bp
chr1 16355271 16355271 1 + C T LUSC 16355270 + 16355250 16355290 41 CCACAGCAAGCCTGTGTACTCCGCTCTGGCCACCTTGCTTC CCACAGCAAGCCTGTGTACTCTGCTCTGGCCACCTTGCTTC < 41bp 0.599060261188865 0.803025733180419 0.23686168 0.2420173 prediction 0.407930943983107 Functional Gain - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16355270 chr1:16355271 synonymous SNV . 0 22 hm5C_associated_SNPs_127775 0 0 0 0 3 CLCNKA chr1:16355340 5'GT 16355340 Upstream 70bp
chr22 39079821 39079821 1 + T C COAD 39079818 + 39079798 39079838 41 CTCAGGAGGAATGCCAGGGGCTCTACCCTCACTTCCTGGAA CTCAGGAGGAATGCCAGGGGCTCCACCCTCACTTCCTGGAA < 41bp 0.573153789338377 0.777116328942681 0.2395601 0.17919406 prediction 0.407925079208609 Functional Gain - TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39079818 chr22:39079821 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_127778 0 0 1 0 1 TOMM22 chr22:39079772 3'AG 39079772 Downstream 50bp
chr15 83655082 83655082 1 + C G rs112694444 83655078 + 83655058 83655098 41 CTGGGCTTCTCAGTGTCTCGCCGGCGGGGTTCGGCCTGAGC CTGGGCTTCTCAGTGTCTCGCCGGGGGGGTTCGGCCTGAGC < 41bp 0.629954142693935 0.833906005115767 0.7855018 0.9196409 prediction 0.407903724843664 Functional Gain - FAM103A1 ENSG00000259805 ncRNA_intronic Human antisense chr15:83655078 chr15:83655082 . . 0 25 hm5C_associated_SNPs_127779 0 0 1 0 1 FAM103A1 chr15:83655121 5'GT 83655121 Upstream 40bp
chr16 3166467 3166467 1 + C T COAD 3166466 + 3166446 3166486 41 GATGTGGCCTTGTACCTCTCCCGGGAGGAGTGGGGACGGCT GATGTGGCCTTGTACCTCTCCTGGGAGGAGTGGGGACGGCT < 41bp 0.462305269545843 0.703951745472931 0.867983 0.8250563 prediction 0.407903490945862 Functional Gain - ZNF205 ENSG00000122386 CDS Human protein_coding chr16:3166466 chr16:3166467 nonsynonymous SNV 0.892 0 22 hm5C_associated_SNPs_127780 0 0 0 0 2 ZNF205 chr16:3166428 3'AG 3166428 Downstream 40bp
chr16 3166467 3166467 1 + C T COAD 3166466 + 3166446 3166486 41 GATGTGGCCTTGTACCTCTCCCGGGAGGAGTGGGGACGGCT GATGTGGCCTTGTACCTCTCCTGGGAGGAGTGGGGACGGCT < 41bp 0.462305269545843 0.703951745472931 0.867983 0.8250563 prediction 0.407903490945862 Functional Gain - ZNF205 ENSG00000122386 CDS Human protein_coding chr16:3166466 chr16:3166467 nonsynonymous SNV 0.892 0 22 hm5C_associated_SNPs_127780 0 0 0 0 2 ZNF205 chr16:3166548 5'GT 3166548 Upstream 82bp
chr19 16986961 16986961 1 + C T CESC 16986960 + 16986940 16986980 41 CGCTGGTGGGAACCTGTCCTCCCGCTGCGTCCGCGCTGCTA CGCTGGTGGGAACCTGTCCTCTCGCTGCGTCCGCGCTGCTA < 41bp 0.43810674553057 0.703951127554484 0.3671887 0.7816006 prediction 0.407902255108967 Functional Gain - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16986960 chr19:16986961 synonymous SNV . 0 22 hm5C_associated_SNPs_127782 0 0 1 0 2 SIN3B chr19:16986866 3'AG 16986866 Downstream 96bp
chr19 16986961 16986961 1 + C T CESC 16986960 + 16986940 16986980 41 CGCTGGTGGGAACCTGTCCTCCCGCTGCGTCCGCGCTGCTA CGCTGGTGGGAACCTGTCCTCTCGCTGCGTCCGCGCTGCTA < 41bp 0.43810674553057 0.703951127554484 0.3671887 0.7816006 prediction 0.407902255108967 Functional Gain - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16986960 chr19:16986961 synonymous SNV . 0 22 hm5C_associated_SNPs_127782 0 0 1 0 2 SIN3B chr19:16987039 5'GT 16987039 Upstream 79bp
chr5 23509160 23509160 1 + C T LUAD 23509159 + 23509139 23509179 41 CACCATGAGCCCTGAAAAGTCCCAAGAGGAGAGCCCAGAAG CACCATGAGCCCTGAAAAGTCTCAAGAGGAGAGCCCAGAAG < 41bp 0.625860352173384 0.829810676918681 0.05697897 0.13428888 prediction 0.407900649490594 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23509159 chr5:23509160 synonymous SNV . 0 22 hm5C_associated_SNPs_127783 0 0 0 0 1 PRDM9 chr5:23509211 5'GT 23509211 Upstream 52bp
chr8 145731972 145731972 1 + C A LIHC 145731971 + 145731951 145731991 41 CTCCTGGCATCAGCTGCAACCCAGTGCAGGGCGCCATGTAC CTCCTGGCATCAGCTGCAACCAAGTGCAGGGCGCCATGTAC < 41bp 0.436339284372485 0.70394941561411 0.42184153 0.8969513 prediction 0.407898831228219 Functional Gain - GPT ENSG00000167701 CDS Human protein_coding chr8:145731971 chr8:145731972 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_127784 0 0 0 0 2 GPT chr8:145731884 3'AG 145731884 Downstream 89bp
chr8 145731972 145731972 1 + C A LIHC 145731971 + 145731951 145731991 41 CTCCTGGCATCAGCTGCAACCCAGTGCAGGGCGCCATGTAC CTCCTGGCATCAGCTGCAACCAAGTGCAGGGCGCCATGTAC < 41bp 0.436339284372485 0.70394941561411 0.42184153 0.8969513 prediction 0.407898831228219 Functional Gain - GPT ENSG00000167701 CDS Human protein_coding chr8:145731971 chr8:145731972 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_127784 0 0 0 0 2 GPT chr8:145732039 5'GT 145732039 Upstream 68bp
chr19 15769192 15769192 1 + C A HNSC 15769188 + 15769168 15769208 41 CAAGACATTGTGCTCCCAGACGGCCGGGTCATCCCCAAAGG CAAGACATTGTGCTCCCAGACGGCAGGGTCATCCCCAAAGG < 41bp 0.74219816307835 0.946145785375374 0.28345767 0.37417972 prediction 0.407895244594048 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15769188 chr19:15769192 synonymous SNV . 0 25 hm5C_associated_SNPs_127786 0 0 0 0 1 CYP4F3 chr19:15769207 5'GT 15769207 Upstream 16bp
chr7 135282129 135282129 1 + T C UCEC 135282127 + 135282107 135282147 41 TATTTTAAGATACTGCAGACCGTGAGGATTCCAAGCCAAAG TATTTTAAGATACTGCAGACCGCGAGGATTCCAAGCCAAAG < 41bp 0.424193821175884 0.70394710463889 0.17131704 0.2687639 prediction 0.40789420927778 Functional Gain - NUP205 ENSG00000155561 CDS Human protein_coding chr7:135282127 chr7:135282129 nonsynonymous SNV 0.766 2 23 hm5C_associated_SNPs_127787 0 0 1 0 2 NUP205 chr7:135282116 3'AG 135282116 Downstream 14bp
chr7 135282129 135282129 1 + T C UCEC 135282127 + 135282107 135282147 41 TATTTTAAGATACTGCAGACCGTGAGGATTCCAAGCCAAAG TATTTTAAGATACTGCAGACCGCGAGGATTCCAAGCCAAAG < 41bp 0.424193821175884 0.70394710463889 0.17131704 0.2687639 prediction 0.40789420927778 Functional Gain - NUP205 ENSG00000155561 CDS Human protein_coding chr7:135282127 chr7:135282129 nonsynonymous SNV 0.766 2 23 hm5C_associated_SNPs_127787 0 0 1 0 2 NUP205 chr7:135282166 5'GT 135282166 Upstream 38bp
chr1 173702898 173702898 1 + C T GBM 173702897 + 173702877 173702917 41 ACTGGAATGGATGTAACAAGCCGCTGCACCCTTGGAGACCC ACTGGAATGGATGTAACAAGCTGCTGCACCCTTGGAGACCC < 41bp 0.621317906386253 0.825263824132747 0.4445849 0.23297551 prediction 0.407891835492988 Functional Gain - KLHL20 ENSG00000076321 CDS Human protein_coding chr1:173702897 chr1:173702898 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_127788 0 0 1 0 1 KLHL20 chr1:173702852 3'AG 173702852 Downstream 47bp
chr14 39584053 39584053 1 + C T BRCA 39584052 + 39584032 39584072 41 GGATCGAAGCAGCTCAATGTCCAGATGTTGTGGTAGCTCAA GGATCGAAGCAGCTCAATGTCTAGATGTTGTGGTAGCTCAA < 41bp 0.601157232728213 0.805092373513636 0.86078334 0.14781421 prediction 0.407870281570846 Functional Gain - GEMIN2 ENSG00000092208 CDS Human protein_coding chr14:39584052 chr14:39584053 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_127791 0 0 1 2 2 GEMIN2 chr14:39584033 3'AG 39584033 Downstream 21bp
chr14 39584053 39584053 1 + C T BRCA 39584052 + 39584032 39584072 41 GGATCGAAGCAGCTCAATGTCCAGATGTTGTGGTAGCTCAA GGATCGAAGCAGCTCAATGTCTAGATGTTGTGGTAGCTCAA < 41bp 0.601157232728213 0.805092373513636 0.86078334 0.14781421 prediction 0.407870281570846 Functional Gain - GEMIN2 ENSG00000092208 CDS Human protein_coding chr14:39584052 chr14:39584053 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_127791 0 0 1 2 2 GEMIN2 chr14:39584117 5'GT 39584117 Upstream 65bp
chr15 75042851 75042851 1 + C A LUAD 75042850 + 75042830 75042870 41 CAGAGGTTCAAGGCCTTCAACCAGAGGTTCCTGTGGTTCCT CAGAGGTTCAAGGCCTTCAACAAGAGGTTCCTGTGGTTCCT < 41bp 0.651997663542642 0.855925711399076 0.9178003 0.8389911 prediction 0.407856095712869 Functional Gain - CYP1A2 ENSG00000140505 CDS Human protein_coding chr15:75042850 chr15:75042851 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_127794 0 0 0 0 1 CYP1A2 chr15:75042910 5'GT 75042910 Upstream 60bp
chr3 12868998 12868998 1 + C A UCEC 12868994 + 12868974 12869014 41 TGGGCTGGACGTGCGGAAGGCGGCCTTTGAATGCATGTATT TGGGCTGGACGTGCGGAAGGCGGCATTTGAATGCATGTATT < 41bp 0.282849733268877 0.703923912413981 0.09143749 0.21487364 prediction 0.407847824827963 Functional Gain - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12868994 chr3:12868998 synonymous SNV . 0 25 hm5C_associated_SNPs_127796 0 0 0 0 1 CAND2 chr3:12868939 3'AG 12868939 Downstream 60bp
chr6 88173833 88173833 1 + T C STAD 88173830 + 88173810 88173850 41 CAAGTGTACCCTCCAAAGGACACTAGCACCCAGTCCATGAG CAAGTGTACCCTCCAAAGGACACCAGCACCCAGTCCATGAG < 41bp 0.477309420733184 0.70392022827613 0.07144669 0.04239434 prediction 0.407840456552261 Functional Gain - CFAP206 ENSG00000213204;ENSG00000272514 CDS Human other chr6:88173830 chr6:88173833 synonymous SNV . 0 24 hm5C_associated_SNPs_127798 0 0 0 0 1 CFAP206 chr6:88173738 3'AG 88173738 Downstream 96bp
chr20 20033166 20033166 1 + C T SKCM 20033165 + 20033145 20033185 41 TGACGGAGGCGGCACCGTTTCCATGGTGACCAGGCTGCGCG TGACGGAGGCGGCACCGTTTCTATGGTGACCAGGCTGCGCG < 41bp 0.483267427172429 0.703919615755529 0.6388921 0.2954382 prediction 0.407839231511057 Functional Gain - CRNKL1 ENSG00000101343 CDS Human other chr20:20033165 chr20:20033166 nonsynonymous SNV 0.010 0 22 hm5C_associated_SNPs_127800 0 0 0 0 1 CRNKL1 chr20:20033235 5'GT 20033235 Upstream 70bp
chr1 11716142 11716142 1 + A G LIHC 11716139 + 11716119 11716159 41 GCCTGCACAGGAACCTCCTGCACAACCCGTGCGCTGAAGGT GCCTGCACAGGAACCTCCTGCACGACCCGTGCGCTGAAGGT < 41bp 0.453265300446395 0.703915062852745 0.05112222 0.09259912 prediction 0.407830125705491 Functional Gain - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11716139 chr1:11716142 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_127801 0 0 1 0 1 FBXO44 chr1:11716157 5'GT 11716157 Upstream 16bp
chr11 35227679 35227679 1 + C A LUAD 35227675 + 35227655 35227695 41 ACAGCAGCCTCAGCTCATACCAGCCATCCAATGCAAGGAAG ACAGCAGCCTCAGCTCATACCAGCAATCCAATGCAAGGAAG < 41bp 0.303219399759713 0.703913080267146 0.1294421 0.24809152 prediction 0.407826160534293 Functional Gain - CD44 ENSG00000026508 CDS Human protein_coding chr11:35227675 chr11:35227679 nonsynonymous SNV 0.010 0 25 hm5C_associated_SNPs_127803 0 0 0 0 1 CD44 chr11:35227659 3'AG 35227659 Downstream 21bp
chr1 42620455 42620455 1 + C T COAD 42620454 + 42620434 42620474 41 GGCCCAGAGCCTCCTGCCCGCCGTGTGCCACCACCCTGCTC GGCCCAGAGCCTCCTGCCCGCTGTGTGCCACCACCCTGCTC < 41bp 0.577308857541829 0.781221572067241 0.34989107 0.18220475 prediction 0.407825429050825 Functional Gain - GUCA2B ENSG00000044012 CDS Human protein_coding chr1:42620454 chr1:42620455 synonymous SNV . 0 22 hm5C_associated_SNPs_127804 0 0 0 0 1 GUCA2B chr1:42620537 5'GT 42620537 Upstream 83bp
chr22 45996254 45996254 1 + T C rs114857363 45996251 + 45996231 45996271 41 GTCCTGAAGCTGGAGATGAACTATGTGGTCGGGGGCGTGGT GTCCTGAAGCTGGAGATGAACTACGTGGTCGGGGGCGTGGT < 41bp 0.563387668296018 0.76729950268102 0.07652563 0.1409038 prediction 0.407823668770004 Functional Gain - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45996251 chr22:45996254 synonymous SNV . 0 24 hm5C_associated_SNPs_127805 0 0 1 0 1 FBLN1 chr22:45996187 3'AG 45996187 Downstream 68bp
chr5 176733523 176733523 1 + C G rs144966419 176733522 + 176733502 176733542 41 AGAGAAGGCCAAGGACCTCGCCAGCAAGGCGGCCACCAAGA AGAGAAGGCCAAGGACCTCGCGAGCAAGGCGGCCACCAAGA < 41bp 0.381732379271115 0.703911225393565 0.17609614 0.5852434 prediction 0.40782245078713 Functional Gain - PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176733522 chr5:176733523 synonymous SNV . 0 22 hm5C_associated_SNPs_127806 0 0 0 0 1 PRELID1 chr5:176733456 3'AG 176733456 Downstream 68bp
chr1 204797891 204797891 1 + C G rs532910166 204797890 + 204797870 204797910 41 AGCTCGGACAGCGCCCAGGGCCGGAGCCCGAGCCCTTGGAG AGCTCGGACAGCGCCCAGGGCGGGAGCCCGAGCCCTTGGAG < 41bp 0.632576088943948 0.836477744405577 0.57732236 0.89582294 prediction 0.407803310923259 Functional Gain - NFASC ENSG00000163531 UTR5 Human protein_coding chr1:204797890 chr1:204797891 . . 0 22 hm5C_associated_SNPs_127812 0 0 0 0 1 NFASC chr1:204797910 5'GT 204797910 Upstream 20bp
chr6 26373150 26373150 1 + C T rs12174631 26373149 + 26373129 26373169 41 CTTCTTCAGGAGCGCCCAGCCCTGGATCGCAGCCCTGGCAG CTTCTTCAGGAGCGCCCAGCCTTGGATCGCAGCCCTGGCAG < 41bp 0.621684289484533 0.825585405287091 0.1440993 0.08820486 prediction 0.407802231605114 Functional Gain - BTN3A2 ENSG00000186470 CDS Human protein_coding chr6:26373149 chr6:26373150 synonymous SNV . 0 22 hm5C_associated_SNPs_127813 0 0 0 0 1 BTN3A2 chr6:26373125 3'AG 26373125 Downstream 26bp
chr1 225965660 225965660 1 + C T UCEC 225965659 + 225965639 225965679 41 CACGATGCCGCAGTACCAGACCTGGGAGGAGTTCAGCCGCG CACGATGCCGCAGTACCAGACTTGGGAGGAGTTCAGCCGCG < 41bp 0.489748055198177 0.703891307708186 0.357368 0.49493012 prediction 0.407782615416371 Functional Gain - SRP9 ENSG00000143742 CDS Human protein_coding chr1:225965659 chr1:225965660 synonymous SNV . 0 22 hm5C_associated_SNPs_127816 0 0 0 0 1 SRP9 chr1:225965714 5'GT 225965714 Upstream 55bp
chr19 10934546 10934546 1 + C T COAD 10934545 + 10934525 10934565 41 AGCTGGAAGGCCTCGTTCCTCCGAGCTGGCGTCTACCCCGA AGCTGGAAGGCCTCGTTCCTCTGAGCTGGCGTCTACCCCGA < 41bp 0.606662267393576 0.810552643076399 0.8751712 0.7248966 prediction 0.407780751365647 Functional Gain - DNM2 ENSG00000079805 CDS Human protein_coding chr19:10934545 chr19:10934546 stopgain 0.483 1 22 hm5C_associated_SNPs_127817 0 0 1 0 2 DNM2 chr19:10934464 3'AG 10934464 Downstream 83bp
chr19 10934546 10934546 1 + C T COAD 10934545 + 10934525 10934565 41 AGCTGGAAGGCCTCGTTCCTCCGAGCTGGCGTCTACCCCGA AGCTGGAAGGCCTCGTTCCTCTGAGCTGGCGTCTACCCCGA < 41bp 0.606662267393576 0.810552643076399 0.8751712 0.7248966 prediction 0.407780751365647 Functional Gain - DNM2 ENSG00000079805 CDS Human protein_coding chr19:10934545 chr19:10934546 stopgain 0.483 1 22 hm5C_associated_SNPs_127817 0 0 1 0 2 DNM2 chr19:10934575 5'GT 10934575 Upstream 30bp
chr15 90799023 90799023 1 + C T GBM 90799022 + 90799002 90799042 41 CCTGGCATGACAGAAATCTGCCGCAAAGATCTGCTGGCTCG CCTGGCATGACAGAAATCTGCTGCAAAGATCTGCTGGCTCG < 41bp 0.467106768126654 0.703887632500805 0.11431703 0.13356933 prediction 0.407775265001611 Functional Gain - TTLL13P ENSG00000213471 CDS Human protein_coding chr15:90799022 chr15:90799023 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_127819 0 0 0 0 1 TTLL13P chr15:90798987 3'AG 90798987 Downstream 37bp
chr10 46998927 46998927 1 + C T SKCM 46998926 + 46998906 46998946 41 GTCCCTGGGCACCCCTGAGCCCCCGCCTTCAGCCCCTGTCC GTCCCTGGGCACCCCTGAGCCTCCGCCTTCAGCCCCTGTCC < 41bp 0.605395503555935 0.809279894242134 0.08913693 0.14959958 prediction 0.407768781372396 Functional Gain - GPRIN2 ENSG00000204175 CDS Human protein_coding chr10:46998926 chr10:46998927 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_127821 0 0 0 0 1 GPRIN2 chr10:46998875 3'AG 46998875 Downstream 53bp
chr19 39422990 39422990 1 + C T ESCA 39422989 + 39422969 39423009 41 CCAGGCCCAGCTCTGGTTCCCCGGCTCTGGGCTACCTGCTC CCAGGCCCAGCTCTGGTTCCCTGGCTCTGGGCTACCTGCTC < 41bp 0.55800078600686 0.761874544735788 0.5153977 0.1900276 prediction 0.407747517457854 Functional Gain - MRPS12 ENSG00000128626 CDS Human protein_coding chr19:39422989 chr19:39422990 nonsynonymous SNV 0.123 1 22 hm5C_associated_SNPs_127823 0 0 1 0 1 MRPS12 chr19:39422973 3'AG 39422973 Downstream 18bp
chr14 102963419 102963419 1 + A G ESCA 102963416 + 102963396 102963436 41 GCACGTGCGGACCGGGATCACCGAGGAGATGCCTGTGGGGA GCACGTGCGGACCGGGATCACCGGGGAGATGCCTGTGGGGA < 41bp 0.453027543133472 0.703869622140525 0.6170859 0.93513393 prediction 0.40773924428105 Functional Gain - TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102963416 chr14:102963419 nonsynonymous SNV 0.897 4 24 hm5C_associated_SNPs_127824 0 0 0 0 1 TECPR2 chr14:102963457 5'GT 102963457 Upstream 39bp
chr5 179234122 179234122 1 + A G rs59066892 179234119 + 179234099 179234139 41 GTGGGCTCGTGCGAGTCGGCCTCAGGTAAGGCTGGAGTGGG GTGGGCTCGTGCGAGTCGGCCTCGGGTAAGGCTGGAGTGGG < 41bp 0.599474079523812 0.803342358139241 0.09935632 0.22284865 prediction 0.407736557230858 Functional Gain - SQSTM1 ENSG00000161011 intronic Human protein_coding chr5:179234119 chr5:179234122 . . 0 24 hm5C_associated_SNPs_127825 0 0 1 0 1 SQSTM1 chr5:179234123 5'GT 179234123 Upstream 2bp
chrX 55249163 55249163 1 + T C SKCM 55249160 + 55249140 55249180 41 ACTCTGCCCACTTTTGATCCCACTAAAGTGCTGGAAGCAGG ACTCTGCCCACTTTTGATCCCACCAAAGTGCTGGAAGCAGG < 41bp 0.474875719359338 0.703865891384152 0.21564129 0.29367077 prediction 0.407731782768305 Functional Gain - PAGE5 ENSG00000158639 CDS Human protein_coding chrX:55249160 chrX:55249163 synonymous SNV . 0 24 hm5C_associated_SNPs_127829 0 0 1 0 1 PAGE5 chrX:55249179 5'GT 55249179 Upstream 17bp
chr3 8775658 8775658 1 + T G LUAD 8775655 + 8775635 8775675 41 GTGAACCGAGACCCCAAGAACATTAACGAGGACATAGTCAA GTGAACCGAGACCCCAAGAACATGAACGAGGACATAGTCAA < 41bp 0.327758466546718 0.70385574245728 0.04174754 0.097249955 prediction 0.407711484914559 Functional Gain - CAV3 ENSG00000182533 CDS Human protein_coding chr3:8775655 chr3:8775658 nonsynonymous SNV 0.931 2 24 hm5C_associated_SNPs_127832 0 0 0 0 1 CAV3 chr3:8775676 5'GT 8775676 Upstream 19bp
chr1 36556897 36556897 1 + C T SKCM 36556896 + 36556876 36556916 41 GGCCAGGGCCCTGGTGCAGTCCCTGCTAGCCAAGGAGGCCT GGCCAGGGCCCTGGTGCAGTCTCTGCTAGCCAAGGAGGCCT < 41bp 0.442690520717148 0.70384767299214 0.11201787 0.118424445 prediction 0.407695345984281 Functional Gain - ADPRHL2 ENSG00000116863 CDS Human protein_coding chr1:36556896 chr1:36556897 synonymous SNV . 0 22 hm5C_associated_SNPs_127833 0 0 1 0 2 ADPRHL2 chr1:36556845 3'AG 36556845 Downstream 53bp
chr1 36556897 36556897 1 + C T SKCM 36556896 + 36556876 36556916 41 GGCCAGGGCCCTGGTGCAGTCCCTGCTAGCCAAGGAGGCCT GGCCAGGGCCCTGGTGCAGTCTCTGCTAGCCAAGGAGGCCT < 41bp 0.442690520717148 0.70384767299214 0.11201787 0.118424445 prediction 0.407695345984281 Functional Gain - ADPRHL2 ENSG00000116863 CDS Human protein_coding chr1:36556896 chr1:36556897 synonymous SNV . 0 22 hm5C_associated_SNPs_127833 0 0 1 0 2 ADPRHL2 chr1:36556941 5'GT 36556941 Upstream 45bp
chr7 48089571 48089571 1 + C A rs2708890 48089570 + 48089550 48089590 41 GAAGTAGACTCTCCTTCCCCCCCGTGTAAGTGCTTGAGCTA GAAGTAGACTCTCCTTCCCCCACGTGTAAGTGCTTGAGCTA < 41bp 0.431583154524889 0.703842088838693 0.03394285 0.16328397 prediction 0.407684177677386 Functional Gain - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48089570 chr7:48089571 nonsynonymous SNV 0.167 3 22 hm5C_associated_SNPs_127836 0 1 0 0 2 C7orf57 chr7:48089477 3'AG 48089477 Downstream 95bp
chr7 48089571 48089571 1 + C A rs2708890 48089570 + 48089550 48089590 41 GAAGTAGACTCTCCTTCCCCCCCGTGTAAGTGCTTGAGCTA GAAGTAGACTCTCCTTCCCCCACGTGTAAGTGCTTGAGCTA < 41bp 0.431583154524889 0.703842088838693 0.03394285 0.16328397 prediction 0.407684177677386 Functional Gain - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48089570 chr7:48089571 nonsynonymous SNV 0.167 3 22 hm5C_associated_SNPs_127836 0 1 0 0 2 C7orf57 chr7:48089574 5'GT 48089574 Upstream 4bp
chr17 1673199 1673199 1 + C G LUSC 1673195 + 1673175 1673215 41 GCTGGTGGAGGAGGAGGATCCTTTCTTCAAAGTCCCCGTGA GCTGGTGGAGGAGGAGGATCCTTTGTTCAAAGTCCCCGTGA < 41bp 0.406077638970576 0.703841069869905 0.13136378 0.13522154 prediction 0.407682139739811 Functional Gain - SERPINF1 ENSG00000132386 CDS Human protein_coding chr17:1673195 chr17:1673199 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_127838 0 0 1 0 1 SERPINF1 chr17:1673146 3'AG 1673146 Downstream 54bp
chr5 176304268 176304268 1 + C T UCEC 176304267 + 176304247 176304287 41 TCTACCTCACGCTGCACAAGCCGGAAGACGTGAGGTGTGGC TCTACCTCACGCTGCACAAGCTGGAAGACGTGAGGTGTGGC < 41bp 0.632738406164329 0.836578342667068 0.30409867 0.33080325 prediction 0.407679873005478 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176304267 chr5:176304268 nonsynonymous SNV 0.994 0 22 hm5C_associated_SNPs_127839 0 0 1 0 2 UNC5A chr5:176304193 3'AG 176304193 Downstream 76bp
chr5 176304268 176304268 1 + C T UCEC 176304267 + 176304247 176304287 41 TCTACCTCACGCTGCACAAGCCGGAAGACGTGAGGTGTGGC TCTACCTCACGCTGCACAAGCTGGAAGACGTGAGGTGTGGC < 41bp 0.632738406164329 0.836578342667068 0.30409867 0.33080325 prediction 0.407679873005478 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176304267 chr5:176304268 nonsynonymous SNV 0.994 0 22 hm5C_associated_SNPs_127839 0 0 1 0 2 UNC5A chr5:176304280 5'GT 176304280 Upstream 13bp
chr17 72350319 72350319 1 + C A KIRC 72350315 + 72350295 72350335 41 CTGCAGAGAGGAAGGAGATCCTGACTGGCACCAAGTGCATC CTGCAGAGAGGAAGGAGATCCTGAATGGCACCAAGTGCATC < 41bp 0.292234634013085 0.703836394280441 0.09590766 0.36517525 prediction 0.407672788560882 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72350315 chr17:72350319 nonsynonymous SNV 0.785 0 25 hm5C_associated_SNPs_127840 0 0 0 0 1 KIF19 chr17:72350301 3'AG 72350301 Downstream 19bp
chr1 192544966 192544966 1 + C T LUAD 192544965 + 192544945 192544985 41 CTCCAAAGTTAGACAAAATGCCAGGAATGTTCTTCTCTGCT CTCCAAAGTTAGACAAAATGCTAGGAATGTTCTTCTCTGCT < 41bp 0.541227646400395 0.745060572051729 0.2557389 0.87604594 prediction 0.407665851302667 Functional Gain - RGS1 ENSG00000090104 CDS Human protein_coding chr1:192544965 chr1:192544966 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_127842 0 0 0 0 1 RGS1 chr1:192545059 5'GT 192545059 Upstream 94bp
chr12 72332866 72332866 1 + T A UCEC 72332862 + 72332842 72332882 41 GAAGAGCATCAGCTACTTGGCAGCTCAACAGTGAGTACTAC GAAGAGCATCAGCTACTTGGCAGCACAACAGTGAGTACTAC < 41bp 0.387715287206367 0.703807275655576 0.11309829 0.14196903 prediction 0.407614551311151 Functional Gain - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72332862 chr12:72332866 nonsynonymous SNV 0.982 1 25 hm5C_associated_SNPs_127851 0 0 0 0 1 TPH2 chr12:72332871 5'GT 72332871 Upstream 6bp
chr1 173726131 173726131 1 + T C STAD 173726128 + 173726108 173726148 41 TCCCCAGTTGGTGGTTGGTGCAGTGGAGATGCCATTTCCAG TCCCCAGTTGGTGGTTGGTGCAGCGGAGATGCCATTTCCAG < 41bp 0.491688945120055 0.703803783505682 0.27591047 0.2454758 prediction 0.407607567011364 Functional Gain - KLHL20 ENSG00000076321 CDS Human protein_coding chr1:173726128 chr1:173726131 synonymous SNV . 0 24 hm5C_associated_SNPs_127852 0 0 1 0 1 KLHL20 chr1:173726115 3'AG 173726115 Downstream 17bp
chr17 73699916 73699916 1 + A G STAD 73699913 + 73699893 73699933 41 GTTTGATCCCCATGGCTGGTCTGAGGACTCCTACTATGAGG GTTTGATCCCCATGGCTGGTCTGGGGACTCCTACTATGAGG < 41bp 0.628126470284184 0.831930156008985 0.017440766 0.17375153 prediction 0.407607371449602 Functional Gain - SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73699913 chr17:73699916 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_127853 0 0 1 0 2 SAP30BP chr17:73699888 3'AG 73699888 Downstream 29bp
chr17 73699916 73699916 1 + A G STAD 73699913 + 73699893 73699933 41 GTTTGATCCCCATGGCTGGTCTGAGGACTCCTACTATGAGG GTTTGATCCCCATGGCTGGTCTGGGGACTCCTACTATGAGG < 41bp 0.628126470284184 0.831930156008985 0.017440766 0.17375153 prediction 0.407607371449602 Functional Gain - SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73699913 chr17:73699916 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_127853 0 0 1 0 2 SAP30BP chr17:73699939 5'GT 73699939 Upstream 24bp
chr15 91492021 91492021 1 + C T SKCM 91492020 + 91492000 91492040 41 GCATGTGCCCGAGCAGCACCCCAAGGTGAGGGGCCGCCAGA GCATGTGCCCGAGCAGCACCCTAAGGTGAGGGGCCGCCAGA < 41bp 0.451936414620032 0.703800310427366 0.1525887 0.17991066 prediction 0.407600620854732 Functional Gain - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91492020 chr15:91492021 synonymous SNV . 0 22 hm5C_associated_SNPs_127854 0 0 1 0 1 UNC45A chr15:91492024 5'GT 91492024 Upstream 4bp
chr5 5146538 5146538 1 + C G LUSC 5146537 + 5146517 5146557 41 TTTGCGATCACACAGAAACTCCTCAGTGGCCCTTTCAACCT TTTGCGATCACACAGAAACTCGTCAGTGGCCCTTTCAACCT < 41bp 0.381379861614284 0.703800292964225 0.1443975 0.35767412 prediction 0.407600585928451 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5146537 chr5:5146538 synonymous SNV . 0 22 hm5C_associated_SNPs_127855 0 0 0 0 1 ADAMTS16 chr5:5146568 5'GT 5146568 Upstream 31bp
chr12 7283255 7283255 1 + T A rs202132447 7283251 + 7283231 7283271 41 CCCCACGCCGCACCATGACCCTCCTGCTGCTGCCCCTTCTG CCCCACGCCGCACCATGACCCTCCAGCTGCTGCCCCTTCTG < 41bp 0.370229608916689 0.703794698488523 0.28134447 0.9484621 prediction 0.407589396977047 Functional Gain - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7283251 chr12:7283255 nonsynonymous SNV 0.975 1 25 hm5C_associated_SNPs_127857 0 0 1 0 1 CLSTN3 chr12:7283308 5'GT 7283308 Upstream 54bp
chr12 121434401 121434401 1 + T G rs115080759 121434397 + 121434377 121434417 41 AGCACCCTGACAGCACTGCACAGCTTGGAGCAGACATCCCC AGCACCCTGACAGCACTGCACAGCGTGGAGCAGACATCCCC < 41bp 0.515450235420421 0.719238797168285 0.09991649 0.2124128 prediction 0.407577123495728 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121434397 chr12:121434401 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_127861 2 0 0 0 1 HNF1A chr12:121434344 3'AG 121434344 Downstream 58bp
chr16 88926377 88926377 1 + C G BLCA 88926373 + 88926353 88926393 41 ACAACCCGGGGGACCGCATCCAGTCCAGGTGGGCCCTACTT ACAACCCGGGGGACCGCATCCAGTGCAGGTGGGCCCTACTT < 41bp 0.399389327623551 0.703778625630885 0.4009235 0.32350487 prediction 0.40755725126177 Functional Gain - TRAPPC2L ENSG00000167515 CDS Human protein_coding chr16:88926373 chr16:88926377 nonsynonymous SNV 0.941 5 25 hm5C_associated_SNPs_127865 0 0 1 3 2 TRAPPC2L chr16:88926301 3'AG 88926301 Downstream 77bp
chr16 88926377 88926377 1 + C G BLCA 88926373 + 88926353 88926393 41 ACAACCCGGGGGACCGCATCCAGTCCAGGTGGGCCCTACTT ACAACCCGGGGGACCGCATCCAGTGCAGGTGGGCCCTACTT < 41bp 0.399389327623551 0.703778625630885 0.4009235 0.32350487 prediction 0.40755725126177 Functional Gain - TRAPPC2L ENSG00000167515 CDS Human protein_coding chr16:88926373 chr16:88926377 nonsynonymous SNV 0.941 5 25 hm5C_associated_SNPs_127865 0 0 1 3 2 TRAPPC2L chr16:88926380 5'GT 88926380 Upstream 4bp
chr9 96415507 96415507 1 + T C STAD 96415505 + 96415485 96415525 41 TGACATTGTAAAGAAACTGTCATGGGTAGAAAACTACTGGC TGACATTGTAAAGAAACTGTCACGGGTAGAAAACTACTGGC < 41bp 0.420494913575295 0.703778138989806 0.8823632 0.79458606 prediction 0.407556277979612 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96415505 chr9:96415507 nonsynonymous SNV 0.939 4 23 hm5C_associated_SNPs_127866 0 0 1 0 1 PHF2 chr9:96415461 3'AG 96415461 Downstream 47bp
chr19 39423057 39423057 1 + C T LUSC 39423056 + 39423036 39423076 41 GCCTGGGGCCCCCCAAGCGGCCGCCTCGGAAGCTGGGCCCC GCCTGGGGCCCCCCAAGCGGCTGCCTCGGAAGCTGGGCCCC < 41bp 0.576072203655904 0.779839594821349 0.27569678 0.4222765 prediction 0.407534782330891 Functional Gain - MRPS12 ENSG00000128626 CDS Human protein_coding chr19:39423056 chr19:39423057 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_127869 0 0 1 0 1 MRPS12 chr19:39422973 3'AG 39422973 Downstream 85bp
chr2 71163111 71163111 1 + T C rs17853498 71163109 + 71163089 71163129 41 CCATGGAGATAGACAGCAGGCCTGGGGGGCTCCCCGGCAGT CCATGGAGATAGACAGCAGGCCCGGGGGGCTCCCCGGCAGT < 41bp 0.590647707636827 0.794411315777254 0.8845248 0.82935846 prediction 0.407527216280853 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71163109 chr2:71163111 synonymous SNV . 0 23 hm5C_associated_SNPs_127870 2 0 0 0 1 ATP6V1B1 chr2:71163202 5'GT 71163202 Upstream 92bp
chr8 22973103 22973103 1 + C T UCEC 22973102 + 22973082 22973122 41 CACCTTCCGGAATGAAAACTCCCCAGAGATGTGCCGGAAGT CACCTTCCGGAATGAAAACTCTCCAGAGATGTGCCGGAAGT < 41bp 0.651181978608626 0.85493932611169 0.24359503 0.96020234 prediction 0.407514695006127 Functional Gain - TNFRSF10C ENSG00000173535 CDS Human protein_coding chr8:22973102 chr8:22973103 synonymous SNV . 0 22 hm5C_associated_SNPs_127873 0 0 0 2 2 TNFRSF10C chr8:22973021 3'AG 22973021 Downstream 83bp
chr8 22973103 22973103 1 + C T UCEC 22973102 + 22973082 22973122 41 CACCTTCCGGAATGAAAACTCCCCAGAGATGTGCCGGAAGT CACCTTCCGGAATGAAAACTCTCCAGAGATGTGCCGGAAGT < 41bp 0.651181978608626 0.85493932611169 0.24359503 0.96020234 prediction 0.407514695006127 Functional Gain - TNFRSF10C ENSG00000173535 CDS Human protein_coding chr8:22973102 chr8:22973103 synonymous SNV . 0 22 hm5C_associated_SNPs_127873 0 0 0 2 2 TNFRSF10C chr8:22973129 5'GT 22973129 Upstream 27bp
chr6 12294237 12294237 1 + C T LUSC 12294236 + 12294216 12294256 41 AGCCTTGGAGAATTTACTTCCCACAAAGGCAACAGACCGTG AGCCTTGGAGAATTTACTTCCTACAAAGGCAACAGACCGTG < 41bp 0.426483913986769 0.703751397959238 0.03231293 0.8865812 prediction 0.407502795918475 Functional Gain - EDN1 ENSG00000078401 CDS Human protein_coding chr6:12294236 chr6:12294237 synonymous SNV . 0 22 hm5C_associated_SNPs_127877 0 0 0 0 2 EDN1 chr6:12294174 3'AG 12294174 Downstream 64bp
chr6 12294237 12294237 1 + C T LUSC 12294236 + 12294216 12294256 41 AGCCTTGGAGAATTTACTTCCCACAAAGGCAACAGACCGTG AGCCTTGGAGAATTTACTTCCTACAAAGGCAACAGACCGTG < 41bp 0.426483913986769 0.703751397959238 0.03231293 0.8865812 prediction 0.407502795918475 Functional Gain - EDN1 ENSG00000078401 CDS Human protein_coding chr6:12294236 chr6:12294237 synonymous SNV . 0 22 hm5C_associated_SNPs_127877 0 0 0 0 2 EDN1 chr6:12294329 5'GT 12294329 Upstream 93bp
chr16 336362 336362 1 + C T rs190260612 336361 + 336341 336381 41 GGTTTCCCCCAGCCCTATCTCCTGAGCCAGGAGATACCCCC GGTTTCCCCCAGCCCTATCTCTTGAGCCAGGAGATACCCCC < 41bp 0.453505014444812 0.703741251436694 0.3464927 0.16356787 prediction 0.407482502873388 Functional Gain - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:336361 chr16:336362 synonymous SNV . 0 22 hm5C_associated_SNPs_127883 0 0 0 0 1 PDIA2 chr16:336353 3'AG 336353 Downstream 10bp
chr14 23844853 23844853 1 + C A rs145160878 23844852 + 23844832 23844872 41 AGGTTGGACAGAGACTTGAACCGGCTCCCCCAGGACCTGTA AGGTTGGACAGAGACTTGAACAGGCTCCCCCAGGACCTGTA < 41bp 0.435738258086271 0.70373159555238 0.47553867 0.88777256 prediction 0.407463191104759 Functional Gain - IL25 ENSG00000166090 CDS Human protein_coding chr14:23844852 chr14:23844853 synonymous SNV . 0 22 hm5C_associated_SNPs_127886 0 0 0 0 1 IL25 chr14:23844834 3'AG 23844834 Downstream 20bp
chr3 112710145 112710145 1 + T C OV 112710143 + 112710123 112710163 41 ATCGACTACGTCAGCTCCGCCGTCCGTATCGACCACGCCCC ATCGACTACGTCAGCTCCGCCGCCCGTATCGACCACGCCCC < 41bp 0.440889225588467 0.703728994662291 0.1603016 0.10928476 prediction 0.407457989324583 Functional Gain - GTPBP8 ENSG00000163607 CDS Human protein_coding chr3:112710143 chr3:112710145 nonsynonymous SNV 0.008 1 23 hm5C_associated_SNPs_127888 0 0 1 0 1 GTPBP8 chr3:112710182 5'GT 112710182 Upstream 38bp
chr2 234237188 234237188 1 + C T PRAD 234237187 + 234237167 234237207 41 CTTGAGATGGGTCCCCAGCCCCGAGCTGAGGCGGCCTGGCA CTTGAGATGGGTCCCCAGCCCTGAGCTGAGGCGGCCTGGCA < 41bp 0.620349009395567 0.824075577744629 0.17734906 0.15751544 prediction 0.407453136698125 Functional Gain - SAG ENSG00000130561 CDS Human protein_coding chr2:234237187 chr2:234237188 stopgain 0.233 0 22 hm5C_associated_SNPs_127889 1 0 0 0 2 SAG chr2:234237124 3'AG 234237124 Downstream 65bp
chr2 234237188 234237188 1 + C T PRAD 234237187 + 234237167 234237207 41 CTTGAGATGGGTCCCCAGCCCCGAGCTGAGGCGGCCTGGCA CTTGAGATGGGTCCCCAGCCCTGAGCTGAGGCGGCCTGGCA < 41bp 0.620349009395567 0.824075577744629 0.17734906 0.15751544 prediction 0.407453136698125 Functional Gain - SAG ENSG00000130561 CDS Human protein_coding chr2:234237187 chr2:234237188 stopgain 0.233 0 22 hm5C_associated_SNPs_127889 1 0 0 0 2 SAG chr2:234237259 5'GT 234237259 Upstream 72bp
chr9 138416990 138416990 1 + C A THCA 138416989 + 138416969 138417009 41 TTCCTGCAGAAACCTGCTCTCCAGGGAGCGATTAGGGTGAG TTCCTGCAGAAACCTGCTCTCAAGGGAGCGATTAGGGTGAG < 41bp 0.643145555148614 0.846869818855395 0.86964947 0.9039905 prediction 0.407448527413563 Functional Gain - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138416989 chr9:138416990 nonsynonymous SNV 0.266 2 22 hm5C_associated_SNPs_127890 0 0 0 0 1 LCN1 chr9:138416978 3'AG 138416978 Downstream 13bp
chr11 63064812 63064812 1 + C T SKCM 63064811 + 63064791 63064831 41 ATTCTCAGATGGTGTTTGCTCCAGCTTGCCATTACTGACAC ATTCTCAGATGGTGTTTGCTCTAGCTTGCCATTACTGACAC < 41bp 0.467007137544191 0.703716813249487 0.2930604 0.15395042 prediction 0.407433626498974 Functional Gain - SLC22A10 ENSG00000184999 CDS Human protein_coding chr11:63064811 chr11:63064812 stopgain 0.003 0 22 hm5C_associated_SNPs_127892 0 0 0 0 1 SLC22A10 chr11:63064775 3'AG 63064775 Downstream 38bp
chr11 62010872 62010872 1 + T C UCEC 62010869 + 62010849 62010889 41 ATTTGATGCCCCTCCGGAAGCTGTTGCAGCCAAGTTAGGAG ATTTGATGCCCCTCCGGAAGCTGCTGCAGCCAAGTTAGGAG < 41bp 0.539726149449117 0.743439656320655 0.041835576 0.08159891 prediction 0.407427013743076 Functional Gain - SCGB1D2 ENSG00000124935 CDS Human protein_coding chr11:62010869 chr11:62010872 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_127895 0 0 0 0 1 SCGB1D2 chr11:62010948 5'GT 62010948 Upstream 77bp
chr11 111385654 111385654 1 + C T SKCM 111385653 + 111385633 111385673 41 ATCTCGGCGTCGATGTATCCCCCTAGCGAATCTCAGCTGGT ATCTCGGCGTCGATGTATCCCTCTAGCGAATCTCAGCTGGT < 41bp 0.450011457578521 0.703704401767843 0.080957144 0.8757791 prediction 0.407408803535686 Functional Gain - C11orf88 ENSG00000183644 CDS Human protein_coding chr11:111385653 chr11:111385654 nonsynonymous SNV 0.421 0 22 hm5C_associated_SNPs_127898 0 0 0 0 1 C11orf88 chr11:111385735 5'GT 111385735 Upstream 82bp
chr16 71408715 71408715 1 + A G LUSC 71408712 + 71408692 71408732 41 GCAGAAGTATGATAAAAACTCAGATGGGAAAATCGAGATGG GCAGAAGTATGATAAAAACTCAGGTGGGAAAATCGAGATGG < 41bp 0.618611310520352 0.822311087380421 0.46169987 0.8735777 prediction 0.407399553720138 Functional Gain - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71408712 chr16:71408715 nonsynonymous SNV 0.916 4 24 hm5C_associated_SNPs_127900 0 0 0 0 2 CALB2 chr16:71408648 3'AG 71408648 Downstream 68bp
chr16 71408715 71408715 1 + A G LUSC 71408712 + 71408692 71408732 41 GCAGAAGTATGATAAAAACTCAGATGGGAAAATCGAGATGG GCAGAAGTATGATAAAAACTCAGGTGGGAAAATCGAGATGG < 41bp 0.618611310520352 0.822311087380421 0.46169987 0.8735777 prediction 0.407399553720138 Functional Gain - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71408712 chr16:71408715 nonsynonymous SNV 0.916 4 24 hm5C_associated_SNPs_127900 0 0 0 0 2 CALB2 chr16:71408737 5'GT 71408737 Upstream 23bp
chr4 146575266 146575266 1 + C A SKCM 146575265 + 146575245 146575285 41 GTGAGTGCACTGAAATTACTCCGCAAACGTTCACAAGTCTG GTGAGTGCACTGAAATTACTCAGCAAACGTTCACAAGTCTG < 41bp 0.635702436141539 0.83940206926847 0.23683864 0.45159402 prediction 0.407399266253861 Functional Gain - MMAA ENSG00000151611 CDS Human protein_coding chr4:146575265 chr4:146575266 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_127901 0 0 0 0 1 MMAA chr4:146575295 5'GT 146575295 Upstream 30bp
chr2 242092919 242092919 1 + C T UCEC 242092918 + 242092898 242092938 41 GCGGGTCGAGTCTGAAGAATCCGGCGATGAAGAAGGGAAGA GCGGGTCGAGTCTGAAGAATCTGGCGATGAAGAAGGGAAGA < 41bp 0.602306298835858 0.806004376590895 0.8531219 0.5222873 prediction 0.407396155510074 Functional Gain - PPP1R7 ENSG00000115685 CDS Human protein_coding chr2:242092918 chr2:242092919 synonymous SNV . 0 22 hm5C_associated_SNPs_127904 0 0 1 0 1 PPP1R7 chr2:242092891 3'AG 242092891 Downstream 29bp
chr10 102509561 102509561 1 + C T PAAD 102509560 + 102509540 102509580 41 TGTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGCA TGTGAACGGCCGGCCCCTACCTGACGTGGTGAGGCAGCGCA < 41bp 0.456934129921925 0.703697953390702 0.25690317 0.048038572 prediction 0.407395906781404 Functional Gain - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102509560 chr10:102509561 synonymous SNV . 0 22 hm5C_associated_SNPs_127907 0 0 0 0 2 PAX2 chr10:102509503 3'AG 102509503 Downstream 59bp
chr10 102509561 102509561 1 + C T PAAD 102509560 + 102509540 102509580 41 TGTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGCA TGTGAACGGCCGGCCCCTACCTGACGTGGTGAGGCAGCGCA < 41bp 0.456934129921925 0.703697953390702 0.25690317 0.048038572 prediction 0.407395906781404 Functional Gain - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102509560 chr10:102509561 synonymous SNV . 0 22 hm5C_associated_SNPs_127907 0 0 0 0 2 PAX2 chr10:102509506 3'AG 102509506 Downstream 56bp
chr3 118905584 118905584 1 + C G rs3796355 118905583 + 118905563 118905603 41 CCTTCAGCTTGTGGGAAATCCCGAAGATGGCCAAAGACAAC CCTTCAGCTTGTGGGAAATCCGGAAGATGGCCAAAGACAAC < 41bp 0.568355873239724 0.772043111133744 0.31812376 0.5632829 prediction 0.407374475788039 Functional Gain - UPK1B ENSG00000114638 UTR5 Human protein_coding chr3:118905583 chr3:118905584 . . 0 22 hm5C_associated_SNPs_127913 0 0 0 0 1 UPK1B chr3:118905657 5'GT 118905657 Upstream 74bp
chr9 107690124 107690124 1 + A G rs2243312 107690121 + 107690101 107690141 41 GTGGTGGGGATGTGGGGCTCCGGATCAAAGTCCCCGAAACC GTGGTGGGGATGTGGGGCTCCGGGTCAAAGTCCCCGAAACC < 41bp 0.466690946011571 0.703684440438523 0.7348511 0.8523705 prediction 0.407368880877045 Functional Gain - ABCA1 ENSG00000226334 ncRNA_exonic Human antisense chr9:107690121 chr9:107690124 . . 0 24 hm5C_associated_SNPs_127914 0 0 0 0 1 ABCA1 chr9:107690191 5'GT 107690191 Upstream 68bp
chr6 74073322 74073322 1 + C T UCEC 74073321 + 74073301 74073341 41 GGATGTCGCCACTCAGAAGGCCGAGACCCAGCGGTCTTCAA GGATGTCGCCACTCAGAAGGCTGAGACCCAGCGGTCTTCAA < 41bp 0.551523385722124 0.755206524452669 0.47974098 0.36081767 prediction 0.40736627746109 Functional Gain - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74073321 chr6:74073322 synonymous SNV . 0 22 hm5C_associated_SNPs_127915 0 0 0 0 1 KHDC3L chr6:74073279 3'AG 74073279 Downstream 44bp
chr11 66240746 66240746 1 + T C GBM 66240744 + 66240724 66240764 41 ACAGAGAACATGATTGACTTCGTGGTAACAGACACGTCCCC ACAGAGAACATGATTGACTTCGCGGTAACAGACACGTCCCC < 41bp 0.648630057136494 0.85231063118528 0.78290737 0.7579186 prediction 0.407361148097571 Functional Gain - PELI3 ENSG00000174516 CDS Human protein_coding chr11:66240744 chr11:66240746 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_127916 0 0 0 0 1 PELI3 chr11:66240712 3'AG 66240712 Downstream 35bp
chrX 134987434 134987434 1 + C T GBM 134987433 + 134987413 134987453 41 GCTACCATCGCTCACAATATCCGTGAAGAGAGGATGGAAAA GCTACCATCGCTCACAATATCTGTGAAGAGAGGATGGAAAA < 41bp 0.464979296912446 0.703680316655817 0.23909837 0.17754546 prediction 0.407360633311634 Functional Gain - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134987433 chrX:134987434 nonsynonymous SNV 0.030 0 22 hm5C_associated_SNPs_127917 0 0 0 0 1 SAGE1 chrX:134987411 3'AG 134987411 Downstream 24bp
chr19 55597823 55597823 1 + C T COAD 55597822 + 55597802 55597842 41 CCTCCAGCTCTGGCTCGGCCCCGCTGGGACAGGCCCCGCTG CCTCCAGCTCTGGCTCGGCCCTGCTGGGACAGGCCCCGCTG < 41bp 0.616118513214451 0.819794727004078 0.11141205 0.08949354 prediction 0.407352427579253 Functional Gain - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55597822 chr19:55597823 nonsynonymous SNV 0.598 1 22 hm5C_associated_SNPs_127919 0 0 0 0 1 EPS8L1 chr19:55597760 3'AG 55597760 Downstream 64bp
chr12 118464747 118464747 1 + C A LUSC 118464746 + 118464726 118464766 41 GGAGACTGTCTACACCTGCACCGGGCACCCGCTCAAGTCAG GGAGACTGTCTACACCTGCACAGGGCACCCGCTCAAGTCAG < 41bp 0.638578408499084 0.842254601591135 0.32834172 0.61829257 prediction 0.407352386184102 Functional Gain - RFC5 ENSG00000111445 CDS Human protein_coding chr12:118464746 chr12:118464747 synonymous SNV . 0 22 hm5C_associated_SNPs_127920 0 0 1 0 2 RFC5 chr12:118464694 3'AG 118464694 Downstream 54bp
chr12 118464747 118464747 1 + C A LUSC 118464746 + 118464726 118464766 41 GGAGACTGTCTACACCTGCACCGGGCACCCGCTCAAGTCAG GGAGACTGTCTACACCTGCACAGGGCACCCGCTCAAGTCAG < 41bp 0.638578408499084 0.842254601591135 0.32834172 0.61829257 prediction 0.407352386184102 Functional Gain - RFC5 ENSG00000111445 CDS Human protein_coding chr12:118464746 chr12:118464747 synonymous SNV . 0 22 hm5C_associated_SNPs_127920 0 0 1 0 2 RFC5 chr12:118464823 5'GT 118464823 Upstream 77bp
chr10 95380423 95380423 1 + C A LUAD 95380419 + 95380399 95380439 41 TTTCTGACTTCATGGACAAGCAAACTGGGTATGTCACTAAG TTTCTGACTTCATGGACAAGCAAAATGGGTATGTCACTAAG < 41bp 0.296703132339343 0.703672354051559 0.10877499 0.2206203 prediction 0.407344708103119 Functional Gain - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95380419 chr10:95380423 nonsynonymous SNV 0.939 4 25 hm5C_associated_SNPs_127921 0 0 0 0 1 PDE6C chr10:95380389 3'AG 95380389 Downstream 35bp
chr1 227153387 227153387 1 + C T UCEC 227153386 + 227153366 227153406 41 CTCCAGCTCAGCGAGCATGCCCGGGAGCGGAAGGTGCCTGT CTCCAGCTCAGCGAGCATGCCTGGGAGCGGAAGGTGCCTGT < 41bp 0.615928502105156 0.819594984858785 0.82452106 0.67132974 prediction 0.407332965507258 Functional Gain - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227153386 chr1:227153387 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_127923 0 0 1 0 1 COQ8A chr1:227153438 5'GT 227153438 Upstream 52bp
chr15 58834054 58834054 1 + T C HNSC 58834051 + 58834031 58834071 41 GAAGTCTCAGCCGGCCCAGCCAGTGAACGTGGGGCTGGTGG GAAGTCTCAGCCGGCCCAGCCAGCGAACGTGGGGCTGGTGG < 41bp 0.484210331060505 0.703666285962624 0.9140278 0.8861154 prediction 0.407332571925248 Functional Gain - LIPC ENSG00000166035 CDS Human protein_coding chr15:58834051 chr15:58834054 nonsynonymous SNV 0.911 1 24 hm5C_associated_SNPs_127924 0 0 1 0 1 LIPC chr15:58833984 3'AG 58833984 Downstream 71bp
chr3 68055884 68055884 1 + C A SKCM 68055880 + 68055860 68055900 41 TTCCAGCAGCATCACCTGCACAGACCAGGTAAGTCAGGAGC TTCCAGCAGCATCACCTGCACAGAACAGGTAAGTCAGGAGC < 41bp 0.314852982307745 0.703665672400324 0.10036719 0.20633182 prediction 0.407331344800648 Functional Gain - FAM19A1 ENSG00000183662 CDS Human protein_coding chr3:68055880 chr3:68055884 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_127925 0 0 0 0 1 FAM19A1 chr3:68055887 5'GT 68055887 Upstream 4bp
chr6 44148730 44148730 1 + T A LUSC 44148728 + 44148708 44148748 41 TGCCGCTGCATGATCAACCTCATGGATGTATCCTCCTGTCC TGCCGCTGCATGATCAACCTCAAGGATGTATCCTCCTGTCC < 41bp 0.509294270919841 0.712948218739222 0.2838974 0.8812456 prediction 0.407307895638761 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44148728 chr6:44148730 nonsynonymous SNV 0.981 2 23 hm5C_associated_SNPs_127934 0 0 0 0 2 CAPN11 chr6:44148670 3'AG 44148670 Downstream 61bp
chr6 44148730 44148730 1 + T A LUSC 44148728 + 44148708 44148748 41 TGCCGCTGCATGATCAACCTCATGGATGTATCCTCCTGTCC TGCCGCTGCATGATCAACCTCAAGGATGTATCCTCCTGTCC < 41bp 0.509294270919841 0.712948218739222 0.2838974 0.8812456 prediction 0.407307895638761 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44148728 chr6:44148730 nonsynonymous SNV 0.981 2 23 hm5C_associated_SNPs_127934 0 0 0 0 2 CAPN11 chr6:44148734 5'GT 44148734 Upstream 5bp
chr2 187540353 187540353 1 + T G BRCA 187540351 + 187540331 187540371 41 GGTTGTGGAGTTGCTCAGTGCTTGAAGATTGTCTGCCAAGT GGTTGTGGAGTTGCTCAGTGCTGGAAGATTGTCTGCCAAGT < 41bp 0.37483306173584 0.703639129922239 0.112482876 0.18423432 prediction 0.407278259844477 Functional Gain - ITGAV ENSG00000138448 CDS Human protein_coding chr2:187540351 chr2:187540353 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_127937 0 0 1 0 1 ITGAV chr2:187540444 5'GT 187540444 Upstream 92bp
chr19 11350513 11350513 1 + T C UCEC 11350511 + 11350491 11350531 41 CTGACAAAGGCCAGGAACAGCCTGGGTCTCTATGGCCGCAC CTGACAAAGGCCAGGAACAGCCCGGGTCTCTATGGCCGCAC < 41bp 0.456866122040868 0.703631590705604 0.119077116 0.2536366 prediction 0.407263181411209 Functional Gain - ANGPTL8 ENSG00000130173 CDS Human protein_coding chr19:11350511 chr19:11350513 nonsynonymous SNV 0.096 3 23 hm5C_associated_SNPs_127941 0 0 1 0 1 ANGPTL8 chr19:11350610 5'GT 11350610 Upstream 98bp
chr2 170551049 170551049 1 + A G rs76102705 170551046 + 170551026 170551066 41 TGGGCTTGTGAGTGGGGCTGCCGAGAGGGCAGGCGTGGGGC TGGGCTTGTGAGTGGGGCTGCCGGGAGGGCAGGCGTGGGGC < 41bp 0.614441718387953 0.818072430696539 0.4249562 0.89554685 prediction 0.407261424617172 Functional Gain - PHOSPHO2;PHOSPHO2-KLHL23 ENSG00000144362;ENSG00000213160 UTR5 Human other chr2:170551046 chr2:170551049 . . 0 24 hm5C_associated_SNPs_127942 0 0 1 0 1 PHOSPHO2;PHOSPHO2-KLHL23 chr2:170551132 5'GT 170551132 Upstream 84bp
chr11 111896384 111896384 1 + C T LUSC 111896383 + 111896363 111896403 41 GGGCACTGTGCGGCTGGACCCCCAGTTCTGGGGCCACGCCG GGGCACTGTGCGGCTGGACCCTCAGTTCTGGGGCCACGCCG < 41bp 0.574283069920049 0.777910170156794 0.21428898 0.19068524 prediction 0.407254200473491 Functional Gain - DLAT ENSG00000150768 CDS Human protein_coding chr11:111896383 chr11:111896384 nonsynonymous SNV 0.023 0 22 hm5C_associated_SNPs_127945 0 0 1 0 2 DLAT chr11:111896348 3'AG 111896348 Downstream 37bp
chr11 111896384 111896384 1 + C T LUSC 111896383 + 111896363 111896403 41 GGGCACTGTGCGGCTGGACCCCCAGTTCTGGGGCCACGCCG GGGCACTGTGCGGCTGGACCCTCAGTTCTGGGGCCACGCCG < 41bp 0.574283069920049 0.777910170156794 0.21428898 0.19068524 prediction 0.407254200473491 Functional Gain - DLAT ENSG00000150768 CDS Human protein_coding chr11:111896383 chr11:111896384 nonsynonymous SNV 0.023 0 22 hm5C_associated_SNPs_127945 0 0 1 0 2 DLAT chr11:111896475 5'GT 111896475 Upstream 92bp
chr11 73103444 73103444 1 + C A SARC 73103443 + 73103423 73103463 41 GGCATCCTGGTGTGCAACCTCCTCAAGCGGAAGGGCTACCA GGCATCCTGGTGTGCAACCTCATCAAGCGGAAGGGCTACCA < 41bp 0.441475877424578 0.703612301786471 0.07955468 0.08373967 prediction 0.407224603572942 Functional Gain - RELT ENSG00000054967 CDS Human protein_coding chr11:73103443 chr11:73103444 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_127949 0 0 1 0 1 RELT chr11:73103513 5'GT 73103513 Upstream 70bp
chr11 63883726 63883726 1 + C G rs78353563 63883725 + 63883705 63883745 41 GGCCAGGTGGGGCCGGACGCCCCCAGCCATCCACCATGGTG GGCCAGGTGGGGCCGGACGCCGCCAGCCATCCACCATGGTG < 41bp 0.560596938106742 0.764201155658047 0.25103414 0.19498727 prediction 0.407208435102611 Functional Gain - FLRT1 ENSG00000126500 UTR5 Human protein_coding chr11:63883725 chr11:63883726 . . 0 22 hm5C_associated_SNPs_127950 0 0 0 0 1 FLRT1 chr11:63883691 3'AG 63883691 Downstream 36bp
chr6 138196884 138196884 1 + C T SKCM 138196883 + 138196863 138196903 41 TTCCACAGACACACCCATGGCCCGAAGTGGACTTCAGTACA TTCCACAGACACACCCATGGCTCGAAGTGGACTTCAGTACA < 41bp 0.424206343736316 0.703598308949466 0.057520986 0.10096875 prediction 0.407196617898932 Functional Gain - TNFAIP3 ENSG00000118503 CDS Human protein_coding chr6:138196883 chr6:138196884 synonymous SNV 0.283 0 22 hm5C_associated_SNPs_127955 0 0 0 0 2 TNFAIP3 chr6:138196825 3'AG 138196825 Downstream 60bp
chr6 138196884 138196884 1 + C T SKCM 138196883 + 138196863 138196903 41 TTCCACAGACACACCCATGGCCCGAAGTGGACTTCAGTACA TTCCACAGACACACCCATGGCTCGAAGTGGACTTCAGTACA < 41bp 0.424206343736316 0.703598308949466 0.057520986 0.10096875 prediction 0.407196617898932 Functional Gain - TNFAIP3 ENSG00000118503 CDS Human protein_coding chr6:138196883 chr6:138196884 synonymous SNV 0.283 0 22 hm5C_associated_SNPs_127955 0 0 0 0 2 TNFAIP3 chr6:138196972 5'GT 138196972 Upstream 89bp
chr19 11762815 11762815 1 + C T LUSC 11762814 + 11762794 11762834 41 GGGAAAAAACCTTCGATTCTCCCCAAACCGTTCGAAGATAC GGGAAAAAACCTTCGATTCTCTCCAAACCGTTCGAAGATAC < 41bp 0.468534356751197 0.703598100681504 0.06019935 0.9512906 prediction 0.407196201363009 Functional Gain - ZNF627;ZNF833P ENSG00000197332;ENSG00000267500 ncRNA_exonic Human other chr19:11762814 chr19:11762815 . . 0 22 hm5C_associated_SNPs_127957 0 0 0 6 1 ZNF627;ZNF833P chr19:11762868 5'GT 11762868 Upstream 54bp
chr7 31013682 31013682 1 + T A LUAD 31013680 + 31013660 31013700 41 CTGTTGGCAGAAGCCGTCTACCTGAACTGCCTCCTGGCCTC CTGTTGGCAGAAGCCGTCTACCAGAACTGCCTCCTGGCCTC < 41bp 0.543997161785038 0.74759347898982 0.45052233 0.889204 prediction 0.407192634409562 Functional Gain - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31013680 chr7:31013682 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_127959 0 0 0 0 2 GHRHR chr7:31013600 3'AG 31013600 Downstream 83bp
chr7 31013682 31013682 1 + T A LUAD 31013680 + 31013660 31013700 41 CTGTTGGCAGAAGCCGTCTACCTGAACTGCCTCCTGGCCTC CTGTTGGCAGAAGCCGTCTACCAGAACTGCCTCCTGGCCTC < 41bp 0.543997161785038 0.74759347898982 0.45052233 0.889204 prediction 0.407192634409562 Functional Gain - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31013680 chr7:31013682 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_127959 0 0 0 0 2 GHRHR chr7:31013753 5'GT 31013753 Upstream 72bp
chr10 70863692 70863692 1 + T C STAD 70863690 + 70863670 70863710 41 GAGGACTACTCTGGATCAGGCTTCGGCTCCGGCTCCGGCTC GAGGACTACTCTGGATCAGGCTCCGGCTCCGGCTCCGGCTC < 41bp 0.661035082886079 0.864629998044288 0.26538107 0.3630625 prediction 0.407189830316418 Functional Gain - SRGN ENSG00000122862 CDS Human protein_coding chr10:70863690 chr10:70863692 nonsynonymous SNV 0.248 0 23 hm5C_associated_SNPs_127961 0 0 1 0 1 SRGN chr10:70863627 3'AG 70863627 Downstream 66bp
chr19 58989019 58989019 1 + C A UCEC 58989018 + 58988998 58989038 41 CCTCAGATCACAGCCCATGTCCTGAAGCAGGAGGTGCTCCC CCTCAGATCACAGCCCATGTCATGAAGCAGGAGGTGCTCCC < 41bp 0.434851061800328 0.703594766837167 0.32367903 0.45964724 prediction 0.407189533674333 Functional Gain - ZNF446 ENSG00000083838 CDS Human protein_coding chr19:58989018 chr19:58989019 nonsynonymous SNV 0.078 3 22 hm5C_associated_SNPs_127962 0 0 1 0 1 ZNF446 chr19:58989004 3'AG 58989004 Downstream 16bp
chr11 2417935 2417935 1 + T C rs2229751 2417932 + 2417912 2417952 41 GGCATTGCTGCCATCGTGGTCGCTGTGATCATGGTGAGCGG GGCATTGCTGCCATCGTGGTCGCCGTGATCATGGTGAGCGG < 41bp 0.561737914039539 0.76532862621951 0.086567014 0.1660943 prediction 0.407181424359942 Functional Gain - CD81 ENSG00000110651 CDS Human protein_coding chr11:2417932 chr11:2417935 synonymous SNV . 0 24 hm5C_associated_SNPs_127964 0 0 1 2 2 CD81 chr11:2417858 3'AG 2417858 Downstream 78bp
chr11 2417935 2417935 1 + T C rs2229751 2417932 + 2417912 2417952 41 GGCATTGCTGCCATCGTGGTCGCTGTGATCATGGTGAGCGG GGCATTGCTGCCATCGTGGTCGCCGTGATCATGGTGAGCGG < 41bp 0.561737914039539 0.76532862621951 0.086567014 0.1660943 prediction 0.407181424359942 Functional Gain - CD81 ENSG00000110651 CDS Human protein_coding chr11:2417932 chr11:2417935 synonymous SNV . 0 24 hm5C_associated_SNPs_127964 0 0 1 2 2 CD81 chr11:2417944 5'GT 2417944 Upstream 10bp
chr12 112587574 112587574 1 + C A LIHC 112587570 + 112587550 112587590 41 TTTAGGACCAGTGTGACCAACGCCCAGCCACTGCAACCAAC TTTAGGACCAGTGTGACCAACGCCAAGCCACTGCAACCAAC < 41bp 0.263424343501184 0.703586430779007 0.09137204 0.36810416 prediction 0.407172861558013 Functional Gain - TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112587570 chr12:112587574 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_127966 0 0 1 0 1 TRAFD1 chr12:112587555 3'AG 112587555 Downstream 20bp
chr3 118866357 118866357 1 + C T OV 118866356 + 118866336 118866376 41 GCAAAAGACCAAGCTCTTTTCCCAAGACTCCCCTCCATCTC GCAAAAGACCAAGCTCTTTTCTCAAGACTCCCCTCCATCTC < 41bp 0.59412270781545 0.797706818066804 0.035043955 0.040059507 prediction 0.40716822050271 Functional Gain - C3orf30 ENSG00000163424;ENSG00000251012 CDS Human other chr3:118866356 chr3:118866357 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_127968 0 0 0 0 1 C3orf30 chr3:118866434 5'GT 118866434 Upstream 78bp
chr2 71730372 71730372 1 + C T CESC 71730371 + 71730351 71730391 41 GGGGAAGCCAAGGTCCCACTCCGAGAGGTCCTCGCCACCCC GGGGAAGCCAAGGTCCCACTCTGAGAGGTCCTCGCCACCCC < 41bp 0.552005968709226 0.755582716397396 0.9150995 0.87223524 prediction 0.407153495376338 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71730371 chr2:71730372 stopgain 0.965 0 22 hm5C_associated_SNPs_127970 2 0 0 0 2 DYSF chr2:71730344 3'AG 71730344 Downstream 29bp
chr2 71730372 71730372 1 + C T CESC 71730371 + 71730351 71730391 41 GGGGAAGCCAAGGTCCCACTCCGAGAGGTCCTCGCCACCCC GGGGAAGCCAAGGTCCCACTCTGAGAGGTCCTCGCCACCCC < 41bp 0.552005968709226 0.755582716397396 0.9150995 0.87223524 prediction 0.407153495376338 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71730371 chr2:71730372 stopgain 0.965 0 22 hm5C_associated_SNPs_127970 2 0 0 0 2 DYSF chr2:71730449 5'GT 71730449 Upstream 78bp
chr2 219745739 219745739 1 + C T SKCM 219745738 + 219745718 219745758 41 ATGGGCAGCGCCCACCCTCGCCCCTGGCTGCGGCTCCGACC ATGGGCAGCGCCCACCCTCGCTCCTGGCTGCGGCTCCGACC < 41bp 0.575486447452819 0.779061006335492 0.194109 0.2358092 prediction 0.407149117765347 Functional Gain - WNT10A ENSG00000135925 CDS Human protein_coding chr2:219745738 chr2:219745739 nonsynonymous SNV 0.989 1 22 hm5C_associated_SNPs_127972 0 0 0 0 1 WNT10A chr2:219745830 5'GT 219745830 Upstream 92bp
chr2 47221572 47221572 1 + C A PRAD 47221568 + 47221548 47221588 41 GCTACTGGAGCCCCCTGTCCCACCCTCTGCCTGAGTTCATG GCTACTGGAGCCCCCTGTCCCACCATCTGCCTGAGTTCATG < 41bp 0.275387840357343 0.703562265051227 0.046236336 0.09383839 prediction 0.407124530102454 Functional Gain - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47221568 chr2:47221572 nonsynonymous SNV 0.972 4 25 hm5C_associated_SNPs_127980 0 0 1 0 2 TTC7A chr2:47221496 3'AG 47221496 Downstream 77bp
chr2 47221572 47221572 1 + C A PRAD 47221568 + 47221548 47221588 41 GCTACTGGAGCCCCCTGTCCCACCCTCTGCCTGAGTTCATG GCTACTGGAGCCCCCTGTCCCACCATCTGCCTGAGTTCATG < 41bp 0.275387840357343 0.703562265051227 0.046236336 0.09383839 prediction 0.407124530102454 Functional Gain - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47221568 chr2:47221572 nonsynonymous SNV 0.972 4 25 hm5C_associated_SNPs_127980 0 0 1 0 2 TTC7A chr2:47221653 5'GT 47221653 Upstream 82bp
chr6 42992814 42992814 1 + T C COAD 42992812 + 42992792 42992832 41 AATTGGTAGCTGGAAATAGTCCTAAGAAACAAGCTTCTAGA AATTGGTAGCTGGAAATAGTCCCAAGAAACAAGCTTCTAGA < 41bp 0.416146170023801 0.703551817475022 0.08752462 0.06057301 prediction 0.407103634950044 Functional Gain - RRP36 ENSG00000124541 CDS Human protein_coding chr6:42992812 chr6:42992814 synonymous SNV . 0 23 hm5C_associated_SNPs_127982 0 0 1 0 2 RRP36 chr6:42992723 3'AG 42992723 Downstream 92bp
chr6 42992814 42992814 1 + T C COAD 42992812 + 42992792 42992832 41 AATTGGTAGCTGGAAATAGTCCTAAGAAACAAGCTTCTAGA AATTGGTAGCTGGAAATAGTCCCAAGAAACAAGCTTCTAGA < 41bp 0.416146170023801 0.703551817475022 0.08752462 0.06057301 prediction 0.407103634950044 Functional Gain - RRP36 ENSG00000124541 CDS Human protein_coding chr6:42992812 chr6:42992814 synonymous SNV . 0 23 hm5C_associated_SNPs_127982 0 0 1 0 2 RRP36 chr6:42992870 5'GT 42992870 Upstream 57bp
chr20 31624268 31624268 1 + C T SKCM 31624267 + 31624247 31624287 41 ACAGACCCCATGCCTGTGGGCCAGATGGGCACCGTCAAATA ACAGACCCCATGCCTGTGGGCTAGATGGGCACCGTCAAATA < 41bp 0.634342285217594 0.837885311415625 0.13249153 0.13342708 prediction 0.407086052396064 Functional Gain - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31624267 chr20:31624268 stopgain 0.676 0 22 hm5C_associated_SNPs_127983 0 0 0 0 1 BPIFB6 chr20:31624251 3'AG 31624251 Downstream 18bp
chr5 178373428 178373428 1 + C T LUSC 178373427 + 178373407 178373447 41 GTGGGGGCAGCTGAGCCCCGCCCAGAGGGCCCTGTACAGGG GTGGGGGCAGCTGAGCCCCGCTCAGAGGGCCCTGTACAGGG < 41bp 0.442631708891173 0.703539417987279 0.06172973 0.086839914 prediction 0.407078835974558 Functional Gain - ZNF454 ENSG00000178187 CDS Human protein_coding chr5:178373427 chr5:178373428 synonymous SNV . 0 22 hm5C_associated_SNPs_127984 0 0 0 0 2 ZNF454 chr5:178373360 3'AG 178373360 Downstream 69bp
chr5 178373428 178373428 1 + C T LUSC 178373427 + 178373407 178373447 41 GTGGGGGCAGCTGAGCCCCGCCCAGAGGGCCCTGTACAGGG GTGGGGGCAGCTGAGCCCCGCTCAGAGGGCCCTGTACAGGG < 41bp 0.442631708891173 0.703539417987279 0.06172973 0.086839914 prediction 0.407078835974558 Functional Gain - ZNF454 ENSG00000178187 CDS Human protein_coding chr5:178373427 chr5:178373428 synonymous SNV . 0 22 hm5C_associated_SNPs_127984 0 0 0 0 2 ZNF454 chr5:178373486 5'GT 178373486 Upstream 59bp
chr7 73932488 73932488 1 + C G rs112098981 73932487 + 73932467 73932507 41 AGGCGAGGCCCTGGGAAGGGCCAGTGTGGTGCCACTGCCCT AGGCGAGGCCCTGGGAAGGGCGAGTGTGGTGCCACTGCCCT < 41bp 0.374416887197512 0.70353554152958 0.21580482 0.43978214 prediction 0.407071083059161 Functional Gain - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73932487 chr7:73932488 synonymous SNV . 0 22 hm5C_associated_SNPs_127988 0 0 1 0 1 GTF2IRD1 chr7:73932469 3'AG 73932469 Downstream 20bp
chr14 74004517 74004517 1 + C T rs193163333 74004516 + 74004496 74004536 41 GGCACGAGCGCTACTTCCTCCCGCCCGGGGTGCGGCGCGAG GGCACGAGCGCTACTTCCTCCTGCCCGGGGTGCGGCGCGAG < 41bp 0.548479204812121 0.752005837557957 0.14266086 0.17168492 prediction 0.407053265491671 Functional Gain - ACOT1 ENSG00000184227 CDS Human protein_coding chr14:74004516 chr14:74004517 nonsynonymous SNV 0.006 0 22 hm5C_associated_SNPs_127991 0 0 0 0 1 ACOT1 chr14:74004582 5'GT 74004582 Upstream 66bp
chr7 150749540 150749540 1 + C T STAD 150749539 + 150749519 150749559 41 GCAGCCATCGAACCCAAGTTCCCCACCTCAGCCTGGGCCCC GCAGCCATCGAACCCAAGTTCTCCACCTCAGCCTGGGCCCC < 41bp 0.436880580053474 0.70352346467837 0.058507472 0.41555303 prediction 0.407046929356741 Functional Gain - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150749539 chr7:150749540 nonsynonymous SNV 0.979 1 22 hm5C_associated_SNPs_127993 0 0 0 0 2 ASIC3 chr7:150749503 3'AG 150749503 Downstream 38bp
chr7 150749540 150749540 1 + C T STAD 150749539 + 150749519 150749559 41 GCAGCCATCGAACCCAAGTTCCCCACCTCAGCCTGGGCCCC GCAGCCATCGAACCCAAGTTCTCCACCTCAGCCTGGGCCCC < 41bp 0.436880580053474 0.70352346467837 0.058507472 0.41555303 prediction 0.407046929356741 Functional Gain - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150749539 chr7:150749540 nonsynonymous SNV 0.979 1 22 hm5C_associated_SNPs_127993 0 0 0 0 2 ASIC3 chr7:150749561 5'GT 150749561 Upstream 22bp
chr11 64877380 64877380 1 + C T CESC 64877379 + 64877359 64877399 41 GCGGGTGGTGGAGGATACCACCGCCATCGACGTGCAGGTGC GCGGGTGGTGGAGGATACCACTGCCATCGACGTGCAGGTGC < 41bp 0.594083268734411 0.797598277125984 0.5321508 0.28331745 prediction 0.407030016783145 Functional Gain - VPS51 ENSG00000149823 CDS Human protein_coding chr11:64877379 chr11:64877380 synonymous SNV . 0 22 hm5C_associated_SNPs_127997 0 0 1 0 1 VPS51 chr11:64877395 5'GT 64877395 Upstream 16bp
chr2 69046419 69046419 1 + C T LGG 69046418 + 69046398 69046438 41 TGGGATGCCACTGAAGACCTCCGAATTTCTAGGACAGACAG TGGGATGCCACTGAAGACCTCTGAATTTCTAGGACAGACAG < 41bp 0.441806546618842 0.703506210385934 0.8699921 0.7202656 prediction 0.407012420771868 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69046418 chr2:69046419 stopgain 0.414 0 22 hm5C_associated_SNPs_128001 0 0 0 0 1 ARHGAP25 chr2:69046451 5'GT 69046451 Upstream 33bp
chr14 72190562 72190562 1 + C T STAD 72190561 + 72190541 72190581 41 CCTGATTGGATGGAAAAAACCCGAAGGAACCATAAACTCCG CCTGATTGGATGGAAAAAACCTGAAGGAACCATAAACTCCG < 41bp 0.44206988201517 0.703505341811531 0.06233707 0.07577357 prediction 0.407010683623062 Functional Gain - SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72190561 chr14:72190562 synonymous SNV . 0 22 hm5C_associated_SNPs_128002 0 0 0 0 1 SIPA1L1 chr14:72190603 5'GT 72190603 Upstream 42bp
chr2 27258870 27258870 1 + C T SKCM 27258869 + 27258849 27258889 41 CATGGTTACCGCATCTGTATCCAGGCCATCCTGCAAGACAA CATGGTTACCGCATCTGTATCTAGGCCATCCTGCAAGACAA < 41bp 0.440316469321776 0.703502960656712 0.42133635 0.21599624 prediction 0.407005921313425 Functional Gain - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27258869 chr2:27258870 stopgain 0.999 1 22 hm5C_associated_SNPs_128004 0 0 1 2 2 TMEM214 chr2:27258838 3'AG 27258838 Downstream 33bp
chr2 27258870 27258870 1 + C T SKCM 27258869 + 27258849 27258889 41 CATGGTTACCGCATCTGTATCCAGGCCATCCTGCAAGACAA CATGGTTACCGCATCTGTATCTAGGCCATCCTGCAAGACAA < 41bp 0.440316469321776 0.703502960656712 0.42133635 0.21599624 prediction 0.407005921313425 Functional Gain - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27258869 chr2:27258870 stopgain 0.999 1 22 hm5C_associated_SNPs_128004 0 0 1 2 2 TMEM214 chr2:27258920 5'GT 27258920 Upstream 51bp
chr5 72419209 72419209 1 + T G LUSC 72419205 + 72419185 72419225 41 GGGGCCTCTCCTGGACATGTCTCCTGCAGCTGCTGCTGAGC GGGGCCTCTCCTGGACATGTCTCCGGCAGCTGCTGCTGAGC < 41bp 0.526620012204667 0.730113781409985 0.09207249 0.28083694 prediction 0.406987538410635 Functional Gain - TMEM171 ENSG00000157111 CDS Human protein_coding chr5:72419205 chr5:72419209 synonymous SNV . 0 25 hm5C_associated_SNPs_128006 0 0 0 0 1 TMEM171 chr5:72419133 3'AG 72419133 Downstream 77bp
chr3 183754538 183754538 1 + C G rs73050313 183754537 + 183754517 183754557 41 TTGCAGTGGAGAACACGAGCCCGGGCATGGAGAAGGATGTC TTGCAGTGGAGAACACGAGCCGGGGCATGGAGAAGGATGTC < 41bp 0.376126038989391 0.703482999808815 0.14700246 0.3086167 prediction 0.40696599961763 Functional Gain - HTR3D ENSG00000186090 CDS Human protein_coding chr3:183754537 chr3:183754538 nonsynonymous SNV 0.008 0 22 hm5C_associated_SNPs_128010 0 0 0 0 1 HTR3D chr3:183754536 3'AG 183754536 Downstream 3bp
chr12 57921356 57921356 1 + C T SARC 57921355 + 57921335 57921375 41 GTCACCACGGCAACTACTGACCCGGGGGCCTCCTCTCTGGG GTCACCACGGCAACTACTGACTCGGGGGCCTCCTCTCTGGG < 41bp 0.645822930639443 0.849305282652815 0.520375 0.13381666 prediction 0.406964704026743 Functional Gain - MBD6 ENSG00000166987 CDS Human protein_coding chr12:57921355 chr12:57921356 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_128011 0 0 1 0 2 MBD6 chr12:57921290 3'AG 57921290 Downstream 67bp
chr12 57921356 57921356 1 + C T SARC 57921355 + 57921335 57921375 41 GTCACCACGGCAACTACTGACCCGGGGGCCTCCTCTCTGGG GTCACCACGGCAACTACTGACTCGGGGGCCTCCTCTCTGGG < 41bp 0.645822930639443 0.849305282652815 0.520375 0.13381666 prediction 0.406964704026743 Functional Gain - MBD6 ENSG00000166987 CDS Human protein_coding chr12:57921355 chr12:57921356 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_128011 0 0 1 0 2 MBD6 chr12:57921443 5'GT 57921443 Upstream 88bp
chr1 158914700 158914700 1 + C T STAD 158914699 + 158914679 158914719 41 AAACCAGAGAAGCCATGACTCCAGGAGCATGGCACTACCCC AAACCAGAGAAGCCATGACTCTAGGAGCATGGCACTACCCC < 41bp 0.591334286345064 0.794814731947725 0.79267955 0.6827092 prediction 0.406960891205322 Functional Gain - PYHIN1 ENSG00000163564 CDS Human protein_coding chr1:158914699 chr1:158914700 synonymous SNV . 0 22 hm5C_associated_SNPs_128014 0 0 0 0 1 PYHIN1 chr1:158914665 3'AG 158914665 Downstream 36bp
chr20 31598921 31598921 1 + C T UCEC 31598920 + 31598900 31598940 41 TGGAGAGGCGCTTCAGCCCACCAGGTGAGTGCTCCCCTCCT TGGAGAGGCGCTTCAGCCCACTAGGTGAGTGCTCCCCTCCT < 41bp 0.581679504043652 0.785159782411725 0.83697355 0.82479954 prediction 0.406960556736145 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31598920 chr20:31598921 synonymous SNV . 0 22 hm5C_associated_SNPs_128015 0 0 1 0 1 BPIFB2 chr20:31598923 5'GT 31598923 Upstream 3bp
chr5 81443050 81443050 1 + T C rs181102358 81443048 + 81443028 81443068 41 CCCAGGCTGGAGTGCAGTTGCGTGATCTCAGCTCACTGCAA CCCAGGCTGGAGTGCAGTTGCGCGATCTCAGCTCACTGCAA < 41bp 0.614887852225922 0.818364239676079 0.8042699 0.7248303 prediction 0.406952774900312 Functional Gain - ATG10 ENSG00000152348 CDS Human protein_coding chr5:81443048 chr5:81443050 synonymous SNV . 0 23 hm5C_associated_SNPs_128016 0 0 0 0 1 ATG10 chr5:81443009 3'AG 81443009 Downstream 42bp
chr20 33764233 33764233 1 + C T COAD 33764232 + 33764212 33764252 41 GTATGTGCAGAAACATATTTCCGCGGAAAACACGAAAGGTA GTATGTGCAGAAACATATTTCTGCGGAAAACACGAAAGGTA < 41bp 0.618159870485215 0.82163221514782 0.40190214 0.18320015 prediction 0.40694468932521 Functional Gain - PROCR ENSG00000101000 CDS Human protein_coding chr20:33764232 chr20:33764233 synonymous SNV . 0 22 hm5C_associated_SNPs_128019 0 0 0 0 1 PROCR chr20:33764249 5'GT 33764249 Upstream 17bp
chr2 102851421 102851421 1 + C T SKCM 102851420 + 102851400 102851440 41 GCTGATTGTCATTGTGGTCCCCGAATCGCTGGGCTTTGGCC GCTGATTGTCATTGTGGTCCCTGAATCGCTGGGCTTTGGCC < 41bp 0.455208964914702 0.703467267256892 0.13564551 0.21804926 prediction 0.406934534513784 Functional Gain - IL1RL2 ENSG00000115598 CDS Human protein_coding chr2:102851420 chr2:102851421 synonymous SNV . 0 22 hm5C_associated_SNPs_128020 0 0 0 0 1 IL1RL2 chr2:102851357 3'AG 102851357 Downstream 65bp
chr5 139927415 139927415 1 + T G rs75475787 139927412 + 139927392 139927432 41 CCGGGGGGCACGCTATACGCCACTACCCCCGGAGGTCAGCG CCGGGGGGCACGCTATACGCCACGACCCCCGGAGGTCAGCG < 41bp 0.321851667556912 0.703461846818908 0.0048737824 0.011219233 prediction 0.406923693637816 Functional Gain - EIF4EBP3 ENSG00000243056 CDS Human protein_coding chr5:139927412 chr5:139927415 synonymous SNV . 0 24 hm5C_associated_SNPs_128021 0 0 0 0 1 EIF4EBP3 chr5:139927425 5'GT 139927425 Upstream 11bp
chr14 94640826 94640826 1 + C A COAD 94640822 + 94640802 94640842 41 CATGCATCCGCCGCCGCCCGCCGCCGCGATGGATTTCAGTC CATGCATCCGCCGCCGCCCGCCGCAGCGATGGATTTCAGTC < 41bp 0.313756878002602 0.703459091428598 0.26125187 0.36689934 prediction 0.406918182857197 Functional Gain - PPP4R4 ENSG00000119698 CDS Human protein_coding chr14:94640822 chr14:94640826 synonymous SNV . 0 25 hm5C_associated_SNPs_128022 0 0 1 0 1 PPP4R4 chr14:94640919 5'GT 94640919 Upstream 94bp
chr1 179520514 179520514 1 - G C LUAD 179520515 - 179520495 179520535 41 GCTGAGATTCTGTCAGGCACCCCTGCTGCCGTTCAGCTTCG GCTGAGATTCTGTCAGGCACCGCTGCTGCCGTTCAGCTTCG < 41bp 0.382840711359134 0.70345877255899 0.025462776 0.037778705 prediction 0.406917545117979 Functional Gain - NPHS2 ENSG00000116218 CDS Human protein_coding chr1:179520515 chr1:179520514 nonsynonymous SNV 0.898 5 22 hm5C_associated_SNPs_128023 0 0 0 0 1 NPHS2 chr1:179520586 3'AG 179520586 Downstream 73bp
chr19 49131993 49131993 1 + C T UCEC 49131992 + 49131972 49132012 41 AACTGCTCACTGTTGCTGTGCCGGGGTGGTGGCCACCCACT AACTGCTCACTGTTGCTGTGCTGGGGTGGTGGCCACCCACT < 41bp 0.590420948666211 0.793872213589234 0.90667546 0.7596072 prediction 0.406902529846046 Functional Gain - SPHK2 ENSG00000063176 CDS Human protein_coding chr19:49131992 chr19:49131993 nonsynonymous SNV 0.982 3 22 hm5C_associated_SNPs_128028 0 0 0 0 1 SPHK2 chr19:49131938 3'AG 49131938 Downstream 56bp
chr3 128532230 128532230 1 + C A HNSC 128532229 + 128532209 128532249 41 ATCAAACTGGACAAGAATGACCGGGCCAAGGCCTCGGCAGA ATCAAACTGGACAAGAATGACAGGGCCAAGGCCTCGGCAGA < 41bp 0.634285708907954 0.837729550447924 0.67540026 0.8892422 prediction 0.40688768307994 Functional Gain - RAB7A ENSG00000075785 CDS Human protein_coding chr3:128532229 chr3:128532230 synonymous SNV . 0 22 hm5C_associated_SNPs_128032 0 0 1 0 1 RAB7A chr3:128532170 3'AG 128532170 Downstream 61bp
chr7 44047122 44047122 1 + T A COAD 44047120 + 44047100 44047140 41 AGATAGTCCTGTTCCAGAAACGTCGGTTCCACTTCTTCTGT AGATAGTCCTGTTCCAGAAACGACGGTTCCACTTCTTCTGT < 41bp 0.506259918797526 0.709697750446245 0.36889017 0.20749721 prediction 0.406875663297438 Functional Gain - SPDYE1 ENSG00000136206 CDS Human protein_coding chr7:44047120 chr7:44047122 synonymous SNV . 0 23 hm5C_associated_SNPs_128037 0 0 0 0 1 SPDYE1 chr7:44047185 5'GT 44047185 Upstream 64bp
chr5 50685561 50685561 1 + T C UCEC 50685558 + 50685538 50685578 41 GAAGACCACCCGCGTGCGGACTGTGCTGAACGAGAAGCAGC GAAGACCACCCGCGTGCGGACTGCGCTGAACGAGAAGCAGC < 41bp 0.574328790432978 0.777750403517374 0.15388826 0.19878048 prediction 0.406843226168791 Functional Gain - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50685558 chr5:50685561 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_128049 0 0 0 0 1 ISL1 chr5:50685480 3'AG 50685480 Downstream 82bp
chr16 682656 682656 1 + C A HNSC 682652 + 682632 682672 41 CTGCGTGGCAGCACGCTTCCCCGGCAGCCCAGCTGCGCCGA CTGCGTGGCAGCACGCTTCCCCGGAAGCCCAGCTGCGCCGA < 41bp 0.72938800260656 0.932808881800796 0.7368542 0.8320096 prediction 0.406841758388471 Functional Gain - WFIKKN1 ENSG00000127578 CDS Human protein_coding chr16:682652 chr16:682656 synonymous SNV . 0 25 hm5C_associated_SNPs_128050 0 0 0 0 1 WFIKKN1 chr16:682582 3'AG 682582 Downstream 75bp
chr7 55990862 55990862 1 + T G BRCA 55990859 + 55990839 55990879 41 GTGCTTGATGTTTCAGGAATCACTGACGTTTCAGGATGTGG GTGCTTGATGTTTCAGGAATCACGGACGTTTCAGGATGTGG < 41bp 0.307926180251949 0.703414209133358 0.061696976 0.41360417 prediction 0.406828418266717 Functional Gain - ZNF713 ENSG00000178665;ENSG00000249773 CDS Human other chr7:55990859 chr7:55990862 nonsynonymous SNV 0.966 1 24 hm5C_associated_SNPs_128052 0 0 0 0 1 ZNF713 chr7:55990855 3'AG 55990855 Downstream 8bp
chr8 39564383 39564383 1 + C T SKCM 39564382 + 39564362 39564402 41 TTGTAAATTCCAGTTTGGTTCCCCAGGGGGTAGTATTGATG TTGTAAATTCCAGTTTGGTTCTCCAGGGGGTAGTATTGATG < 41bp 0.423998269401858 0.703408709674378 0.08756244 0.91075826 prediction 0.406817419348755 Functional Gain - ADAM18 ENSG00000168619 CDS Human protein_coding chr8:39564382 chr8:39564383 synonymous SNV . 0 22 hm5C_associated_SNPs_128054 0 0 0 0 2 ADAM18 chr8:39564309 3'AG 39564309 Downstream 75bp
chr8 39564383 39564383 1 + C T SKCM 39564382 + 39564362 39564402 41 TTGTAAATTCCAGTTTGGTTCCCCAGGGGGTAGTATTGATG TTGTAAATTCCAGTTTGGTTCTCCAGGGGGTAGTATTGATG < 41bp 0.423998269401858 0.703408709674378 0.08756244 0.91075826 prediction 0.406817419348755 Functional Gain - ADAM18 ENSG00000168619 CDS Human protein_coding chr8:39564382 chr8:39564383 synonymous SNV . 0 22 hm5C_associated_SNPs_128054 0 0 0 0 2 ADAM18 chr8:39564423 5'GT 39564423 Upstream 41bp
chr14 77294729 77294729 1 + C T rs117254981 77294728 + 77294708 77294748 41 GTTGAAAAAGTGAAACCAGCCCGGGAGAATTCGGAAACAGA GTTGAAAAAGTGAAACCAGCCTGGGAGAATTCGGAAACAGA < 41bp 0.46339012563416 0.703407512381907 0.86492205 0.80038583 prediction 0.406815024763814 Functional Gain - LRRC74A ENSG00000100565 CDS Human protein_coding chr14:77294728 chr14:77294729 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_128055 0 0 0 0 1 LRRC74A chr14:77294634 3'AG 77294634 Downstream 96bp
chr2 85663647 85663647 1 + T A rs72936701 85663643 + 85663623 85663663 41 TCATGTGGCACCCTCTGCCCCTTGTGGACAGACACAGCGGC TCATGTGGCACCCTCTGCCCCTTGAGGACAGACACAGCGGC < 41bp 0.363299241170713 0.703404428908282 0.15342891 0.11575323 prediction 0.406808857816564 Functional Gain - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85663643 chr2:85663647 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_128057 0 0 0 0 2 SH2D6 chr2:85663589 3'AG 85663589 Downstream 59bp
chr2 85663647 85663647 1 + T A rs72936701 85663643 + 85663623 85663663 41 TCATGTGGCACCCTCTGCCCCTTGTGGACAGACACAGCGGC TCATGTGGCACCCTCTGCCCCTTGAGGACAGACACAGCGGC < 41bp 0.363299241170713 0.703404428908282 0.15342891 0.11575323 prediction 0.406808857816564 Functional Gain - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85663643 chr2:85663647 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_128057 0 0 0 0 2 SH2D6 chr2:85663717 5'GT 85663717 Upstream 71bp
chr1 155247408 155247408 1 - G T rs184885598 155247409 - 155247389 155247429 41 GGTCGCCCCTTCGCTGGCCCCCGCCGCCGGCCGCTGCTCTG GGTCGCCCCTTCGCTGGCCCCAGCCGCCGGCCGCTGCTCTG < 41bp 0.603607324122928 0.807011661340972 0.16611397 0.2553535 prediction 0.406808674436089 Functional Gain - HCN3 ENSG00000143630 CDS Human protein_coding chr1:155247409 chr1:155247408 synonymous SNV . 0 22 hm5C_associated_SNPs_128058 0 0 0 0 1 HCN3 chr1:155247329 5'GT 155247329 Upstream 80bp
chr9 116359127 116359127 1 + A G BRCA 116359124 + 116359104 116359144 41 GCGGGGCTGCTTCGACCTGGCACAGAAGCGCATCTTCGGGC GCGGGGCTGCTTCGACCTGGCACGGAAGCGCATCTTCGGGC < 41bp 0.548667952037318 0.752069148781193 0.21670312 0.4730056 prediction 0.40680239348775 Functional Gain - RGS3 ENSG00000138835 CDS Human protein_coding chr9:116359124 chr9:116359127 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_128059 0 0 0 0 1 RGS3 chr9:116359048 3'AG 116359048 Downstream 80bp
chr17 8219099 8219099 1 + T G LUAD 8219095 + 8219075 8219115 41 TTCTAGCAACGCTCCTGTCCCGTGTGCGCTCTTCCCCCCAC TTCTAGCAACGCTCCTGTCCCGTGGGCGCTCTTCCCCCCAC < 41bp 0.549358399662957 0.752752674684724 0.8252343 0.9111303 prediction 0.406788550043533 Functional Gain - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8219095 chr17:8219099 nonsynonymous SNV 0.969 3 25 hm5C_associated_SNPs_128062 0 0 0 0 1 ARHGEF15 chr17:8219073 3'AG 8219073 Downstream 27bp
chr10 75843188 75843188 1 + T C STAD 75843185 + 75843165 75843205 41 GCTGGAAAAGTTGGTGAACTCTGTGCAGGCAAAGAACGCAG GCTGGAAAAGTTGGTGAACTCTGCGCAGGCAAAGAACGCAG < 41bp 0.588467434638798 0.791860668244916 0.11455384 0.063981354 prediction 0.406786467212235 Functional Gain - VCL ENSG00000035403 CDS Human protein_coding chr10:75843185 chr10:75843188 synonymous SNV . 0 24 hm5C_associated_SNPs_128063 0 0 1 0 2 VCL chr10:75843124 3'AG 75843124 Downstream 65bp
chr10 75843188 75843188 1 + T C STAD 75843185 + 75843165 75843205 41 GCTGGAAAAGTTGGTGAACTCTGTGCAGGCAAAGAACGCAG GCTGGAAAAGTTGGTGAACTCTGCGCAGGCAAAGAACGCAG < 41bp 0.588467434638798 0.791860668244916 0.11455384 0.063981354 prediction 0.406786467212235 Functional Gain - VCL ENSG00000035403 CDS Human protein_coding chr10:75843185 chr10:75843188 synonymous SNV . 0 24 hm5C_associated_SNPs_128063 0 0 1 0 2 VCL chr10:75843271 5'GT 75843271 Upstream 84bp
chr14 60585353 60585353 1 + C T SKCM 60585352 + 60585332 60585372 41 GCAGATACAGTGTACTACTACCAAATGGTGCCCAGGTTGAC GCAGATACAGTGTACTACTACTAAATGGTGCCCAGGTTGAC < 41bp 0.427228935967259 0.703387332667159 0.095272124 0.20456278 prediction 0.406774665334318 Functional Gain - PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60585352 chr14:60585353 stopgain 0.940 0 22 hm5C_associated_SNPs_128065 0 0 1 0 1 PCNX4 chr14:60585410 5'GT 60585410 Upstream 58bp
chr2 219677004 219677004 1 + C A rs59443548 219677000 + 219676980 219677020 41 TGAACCAGCGGTTGCTGAAGCCAGCGGAAGCAGCGCTCTAT TGAACCAGCGGTTGCTGAAGCCAGAGGAAGCAGCGCTCTAT < 41bp 0.293097092152421 0.703385798254198 0.89556205 0.9014854 prediction 0.406771596508396 Functional Gain - CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219677000 chr2:219677004 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_128067 0 0 1 0 1 CYP27A1 chr2:219676945 3'AG 219676945 Downstream 60bp
chr19 58846460 58846460 1 + C T LUAD 58846459 + 58846439 58846479 41 CTGCTGGTGCTGGAGCAGTTCCTGGGTGCGCTGCCCCCAGA CTGCTGGTGCTGGAGCAGTTCTTGGGTGCGCTGCCCCCAGA < 41bp 0.627322659659638 0.830705811981168 0.3458691 0.30089092 prediction 0.40676630464306 Functional Gain - ZSCAN22 ENSG00000182318 CDS Human protein_coding chr19:58846459 chr19:58846460 synonymous SNV . 0 22 hm5C_associated_SNPs_128069 0 0 0 0 1 ZSCAN22 chr19:58846555 5'GT 58846555 Upstream 96bp
chr11 85366750 85366750 1 + C G HNSC 85366746 + 85366726 85366766 41 ACCTGTAAATGGTGGTCTAGCAGCCAGGTAGGAAATAAAAA ACCTGTAAATGGTGGTCTAGCAGCGAGGTAGGAAATAAAAA < 41bp 0.42596716656155 0.703381044135929 0.2232477 0.44046965 prediction 0.406762088271859 Functional Gain - TMEM126A ENSG00000171202 CDS Human protein_coding chr11:85366746 chr11:85366750 synonymous SNV . 0 25 hm5C_associated_SNPs_128070 0 0 1 0 1 TMEM126A chr11:85366752 5'GT 85366752 Upstream 3bp
chr12 93135339 93135339 1 + T A rs201730082 93135337 + 93135317 93135357 41 AGACGCTTCTGAGATTTCCTCATCACTGGATTTTATTTCCG AGACGCTTCTGAGATTTCCTCAACACTGGATTTTATTTCCG < 41bp 0.515845982318435 0.719224861481367 0.06506857 0.14428931 prediction 0.406757758325863 Functional Gain - PLEKHG7 ENSG00000187510 CDS Human protein_coding chr12:93135337 chr12:93135339 nonsynonymous SNV 0.008 0 23 hm5C_associated_SNPs_128071 0 0 0 0 2 PLEKHG7 chr12:93135267 3'AG 93135267 Downstream 73bp
chr12 93135339 93135339 1 + T A rs201730082 93135337 + 93135317 93135357 41 AGACGCTTCTGAGATTTCCTCATCACTGGATTTTATTTCCG AGACGCTTCTGAGATTTCCTCAACACTGGATTTTATTTCCG < 41bp 0.515845982318435 0.719224861481367 0.06506857 0.14428931 prediction 0.406757758325863 Functional Gain - PLEKHG7 ENSG00000187510 CDS Human protein_coding chr12:93135337 chr12:93135339 nonsynonymous SNV 0.008 0 23 hm5C_associated_SNPs_128071 0 0 0 0 2 PLEKHG7 chr12:93135368 5'GT 93135368 Upstream 30bp
chr18 9886650 9886650 1 + C T SKCM 9886649 + 9886629 9886669 41 CCTAGAGTTCTTGGAAATAGCCCAGGCCAAAGAGAAGGCCT CCTAGAGTTCTTGGAAATAGCTCAGGCCAAAGAGAAGGCCT < 41bp 0.582155106512106 0.785512672547486 0.17646122 0.14290333 prediction 0.406715132070761 Functional Gain - TXNDC2 ENSG00000168454 CDS Human protein_coding chr18:9886649 chr18:9886650 synonymous SNV . 0 22 hm5C_associated_SNPs_128076 0 0 0 0 1 TXNDC2 chr18:9886586 3'AG 9886586 Downstream 65bp
chrX 48340054 48340054 1 + C T STAD 48340053 + 48340033 48340073 41 CTGTCAGGGCTATGACCCTCCCGAGGGCTTCATCCCGGACC CTGTCAGGGCTATGACCCTCCTGAGGGCTTCATCCCGGACC < 41bp 0.626133546518873 0.82948940121246 0.46045136 0.17968422 prediction 0.406711709387173 Functional Gain - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48340053 chrX:48340054 synonymous SNV . 0 22 hm5C_associated_SNPs_128077 0 0 1 0 2 FTSJ1 chrX:48340020 3'AG 48340020 Downstream 35bp
chrX 48340054 48340054 1 + C T STAD 48340053 + 48340033 48340073 41 CTGTCAGGGCTATGACCCTCCCGAGGGCTTCATCCCGGACC CTGTCAGGGCTATGACCCTCCTGAGGGCTTCATCCCGGACC < 41bp 0.626133546518873 0.82948940121246 0.46045136 0.17968422 prediction 0.406711709387173 Functional Gain - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48340053 chrX:48340054 synonymous SNV . 0 22 hm5C_associated_SNPs_128077 0 0 1 0 2 FTSJ1 chrX:48340103 5'GT 48340103 Upstream 50bp
chr16 2880787 2880787 1 + C T UCEC 2880786 + 2880766 2880806 41 CGGGTGTCTGTAGGTCTTCTCCTGGTGAAAAGGTGAGTAGG CGGGTGTCTGTAGGTCTTCTCTTGGTGAAAAGGTGAGTAGG < 41bp 0.472098937690031 0.703353117732551 0.8705232 0.5292824 prediction 0.406706235465102 Functional Gain - ZG16B ENSG00000162078 CDS Human protein_coding chr16:2880786 chr16:2880787 synonymous SNV . 0 22 hm5C_associated_SNPs_128079 0 0 0 0 2 ZG16B chr16:2880695 3'AG 2880695 Downstream 93bp
chr16 2880787 2880787 1 + C T UCEC 2880786 + 2880766 2880806 41 CGGGTGTCTGTAGGTCTTCTCCTGGTGAAAAGGTGAGTAGG CGGGTGTCTGTAGGTCTTCTCTTGGTGAAAAGGTGAGTAGG < 41bp 0.472098937690031 0.703353117732551 0.8705232 0.5292824 prediction 0.406706235465102 Functional Gain - ZG16B ENSG00000162078 CDS Human protein_coding chr16:2880786 chr16:2880787 synonymous SNV . 0 22 hm5C_associated_SNPs_128079 0 0 0 0 2 ZG16B chr16:2880797 5'GT 2880797 Upstream 11bp
chr8 19171316 19171316 1 + C A rs28366046 19171315 + 19171295 19171335 41 CGGGTGATCGAGCCACCCTGCCCAGGGGCGCCCAGCACTGG CGGGTGATCGAGCCACCCTGCACAGGGGCGCCCAGCACTGG < 41bp 0.475686421868198 0.703352449224526 0.110287964 0.23767242 prediction 0.406704898449052 Functional Gain - SH2D4A ENSG00000104611 CDS Human protein_coding chr8:19171315 chr8:19171316 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_128080 0 0 0 0 1 SH2D4A chr8:19171334 5'GT 19171334 Upstream 19bp
chr2 24240389 24240389 1 + C T COAD 24240388 + 24240368 24240408 41 TGTCCACGGGCTCATCGTGTCCGGCGCCCACAGACCCCACA TGTCCACGGGCTCATCGTGTCTGGCGCCCACAGACCCCACA < 41bp 0.605440153801919 0.808784303044728 0.79788697 0.800817 prediction 0.406688298485619 Functional Gain - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24240388 chr2:24240389 synonymous SNV . 0 22 hm5C_associated_SNPs_128082 0 0 0 0 2 MFSD2B chr2:24240328 3'AG 24240328 Downstream 62bp
chr2 24240389 24240389 1 + C T COAD 24240388 + 24240368 24240408 41 TGTCCACGGGCTCATCGTGTCCGGCGCCCACAGACCCCACA TGTCCACGGGCTCATCGTGTCTGGCGCCCACAGACCCCACA < 41bp 0.605440153801919 0.808784303044728 0.79788697 0.800817 prediction 0.406688298485619 Functional Gain - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24240388 chr2:24240389 synonymous SNV . 0 22 hm5C_associated_SNPs_128082 0 0 0 0 2 MFSD2B chr2:24240458 5'GT 24240458 Upstream 70bp
chr21 47418319 47418319 1 + C T READ 47418318 + 47418298 47418338 41 CTTTTCCATGACAGGGGTATCCGGGCAACAGGGGCGCTCCC CTTTTCCATGACAGGGGTATCTGGGCAACAGGGGCGCTCCC < 41bp 0.588016763935399 0.791356476030711 0.918836 0.84845114 prediction 0.406679424190624 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47418318 chr21:47418319 nonsynonymous SNV 0.661 2 22 hm5C_associated_SNPs_128083 0 0 1 0 2 COL6A1 chr21:47418312 3'AG 47418312 Downstream 8bp
chr21 47418319 47418319 1 + C T READ 47418318 + 47418298 47418338 41 CTTTTCCATGACAGGGGTATCCGGGCAACAGGGGCGCTCCC CTTTTCCATGACAGGGGTATCTGGGCAACAGGGGCGCTCCC < 41bp 0.588016763935399 0.791356476030711 0.918836 0.84845114 prediction 0.406679424190624 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47418318 chr21:47418319 nonsynonymous SNV 0.661 2 22 hm5C_associated_SNPs_128083 0 0 1 0 2 COL6A1 chr21:47418347 5'GT 47418347 Upstream 29bp
chr1 21889686 21889686 1 + C T COAD 21889685 + 21889665 21889705 41 GGTGAAGGCCAATGAGGGCACCGTGGGGGTAAGCGCAGCCA GGTGAAGGCCAATGAGGGCACTGTGGGGGTAAGCGCAGCCA < 41bp 0.610264968006238 0.813599626609408 0.8244535 0.8569628 prediction 0.40666931720634 Functional Gain - ALPL ENSG00000162551 CDS Human protein_coding chr1:21889685 chr1:21889686 synonymous SNV . 0 22 hm5C_associated_SNPs_128085 0 0 0 0 2 ALPL chr1:21889603 3'AG 21889603 Downstream 84bp
chr1 21889686 21889686 1 + C T COAD 21889685 + 21889665 21889705 41 GGTGAAGGCCAATGAGGGCACCGTGGGGGTAAGCGCAGCCA GGTGAAGGCCAATGAGGGCACTGTGGGGGTAAGCGCAGCCA < 41bp 0.610264968006238 0.813599626609408 0.8244535 0.8569628 prediction 0.40666931720634 Functional Gain - ALPL ENSG00000162551 CDS Human protein_coding chr1:21889685 chr1:21889686 synonymous SNV . 0 22 hm5C_associated_SNPs_128085 0 0 0 0 2 ALPL chr1:21889777 5'GT 21889777 Upstream 92bp
chr2 1520681 1520681 1 + T C SKCM 1520679 + 1520659 1520699 41 CGGGAGGCTCCCTCGGGTGACTTGGATCTCCATGTCGCTGG CGGGAGGCTCCCTCGGGTGACTCGGATCTCCATGTCGCTGG < 41bp 0.649933749521239 0.853266682548118 0.77378833 0.8476634 prediction 0.406665866053759 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1520679 chr2:1520681 nonsynonymous SNV 0.021 0 23 hm5C_associated_SNPs_128086 0 0 0 1 2 TPO chr2:1520655 3'AG 1520655 Downstream 27bp
chr2 1520681 1520681 1 + T C SKCM 1520679 + 1520659 1520699 41 CGGGAGGCTCCCTCGGGTGACTTGGATCTCCATGTCGCTGG CGGGAGGCTCCCTCGGGTGACTCGGATCTCCATGTCGCTGG < 41bp 0.649933749521239 0.853266682548118 0.77378833 0.8476634 prediction 0.406665866053759 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1520679 chr2:1520681 nonsynonymous SNV 0.021 0 23 hm5C_associated_SNPs_128086 0 0 0 1 2 TPO chr2:1520754 5'GT 1520754 Upstream 74bp
chr7 23313171 23313171 1 + T C rs2268748 23313168 + 23313148 23313188 41 TCGCCTTTAAGGATGGCAAACAGTGCCCTGATCTCCGTTGG TCGCCTTTAAGGATGGCAAACAGCGCCCTGATCTCCGTTGG < 41bp 0.488107817729943 0.703330972523412 0.33939585 0.54877335 prediction 0.406661945046824 Functional Gain - GPNMB ENSG00000136235 CDS Human protein_coding chr7:23313168 chr7:23313171 synonymous SNV . 0 24 hm5C_associated_SNPs_128087 0 1 0 0 2 GPNMB chr7:23313140 3'AG 23313140 Downstream 32bp
chr7 23313171 23313171 1 + T C rs2268748 23313168 + 23313148 23313188 41 TCGCCTTTAAGGATGGCAAACAGTGCCCTGATCTCCGTTGG TCGCCTTTAAGGATGGCAAACAGCGCCCTGATCTCCGTTGG < 41bp 0.488107817729943 0.703330972523412 0.33939585 0.54877335 prediction 0.406661945046824 Functional Gain - GPNMB ENSG00000136235 CDS Human protein_coding chr7:23313168 chr7:23313171 synonymous SNV . 0 24 hm5C_associated_SNPs_128087 0 1 0 0 2 GPNMB chr7:23313233 5'GT 23313233 Upstream 63bp
chr2 39944243 39944243 1 + A G STAD 39944240 + 39944220 39944260 41 GCTAATTTATAGCCTGCCTGCTGATGTGGAACATGGTTACA GCTAATTTATAGCCTGCCTGCTGGTGTGGAACATGGTTACA < 41bp 0.461298239781361 0.703323803451318 0.25727028 0.32327205 prediction 0.406647606902636 Functional Gain - TMEM178A ENSG00000152154 CDS Human protein_coding chr2:39944240 chr2:39944243 nonsynonymous SNV 0.992 2 24 hm5C_associated_SNPs_128089 0 0 0 0 1 TMEM178A chr2:39944150 3'AG 39944150 Downstream 94bp
chr10 74034536 74034536 1 + A G COAD 74034533 + 74034513 74034553 41 ATGAACACTTGTGTGCCAACCTGATGCAGCTGCTGCAGGAG ATGAACACTTGTGTGCCAACCTGGTGCAGCTGCTGCAGGAG < 41bp 0.619358327404688 0.822680027623808 0.26350522 0.61549115 prediction 0.406643400438241 Functional Gain - DDIT4 ENSG00000168209 CDS Human protein_coding chr10:74034533 chr10:74034536 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_128090 0 0 1 0 1 DDIT4 chr10:74034453 3'AG 74034453 Downstream 84bp
chr2 219735812 219735812 1 + C G rs376257737 219735811 + 219735791 219735831 41 CAGGAAGGCACGGCGGCTGGCCGGGCGGCAGGCCGAGTTGT CAGGAAGGCACGGCGGCTGGCGGGGCGGCAGGCCGAGTTGT < 41bp 0.6951316533837 0.898452474897067 0.8794813 0.9259304 prediction 0.406641643026733 Functional Gain - WNT6 ENSG00000115596 CDS Human protein_coding chr2:219735811 chr2:219735812 synonymous SNV . 0 22 hm5C_associated_SNPs_128091 0 0 0 0 1 WNT6 chr2:219735749 3'AG 219735749 Downstream 64bp
chr13 70681367 70681367 1 - A G LUAD 70681370 - 70681350 70681390 41 CTCAAAGTGGAGCCAGACAACTCTAGCCAGGCAACAGGTGA CTCAAAGTGGAGCCAGACAACTCCAGCCAGGCAACAGGTGA < 41bp 0.540020511257828 0.743339290605683 0.48660034 0.89444935 prediction 0.40663755869571 Functional Gain - KLHL1 ENSG00000150361 CDS Human protein_coding chr13:70681370 chr13:70681367 synonymous SNV . 0 24 hm5C_associated_SNPs_128095 0 0 0 0 1 KLHL1 chr13:70681335 5'GT 70681335 Upstream 33bp
chr10 105128280 105128280 1 + C A BLCA 105128279 + 105128259 105128299 41 CACGGTCGTCTCAGGTTCAGCCTCAGGTCCTGCGGCTCCGG CACGGTCGTCTCAGGTTCAGCATCAGGTCCTGCGGCTCCGG < 41bp 0.445093045761785 0.703316883907316 0.3202052 0.46422234 prediction 0.406633767814631 Functional Gain - TAF5 ENSG00000148835 CDS Human protein_coding chr10:105128279 chr10:105128280 synonymous SNV . 0 22 hm5C_associated_SNPs_128096 0 0 1 0 1 TAF5 chr10:105128305 5'GT 105128305 Upstream 26bp
chr7 157046771 157046771 1 + C T GBM 157046770 + 157046750 157046790 41 CGCCAGCACTGCCTGGCTTTCCGCCAGGGCCTTGCCAATGT CGCCAGCACTGCCTGGCTTTCTGCCAGGGCCTTGCCAATGT < 41bp 0.426537122175774 0.703315047590904 0.16237497 0.16604519 prediction 0.406630095181808 Functional Gain - UBE3C ENSG00000009335 CDS Human protein_coding chr7:157046770 chr7:157046771 nonsynonymous SNV 0.584 4 22 hm5C_associated_SNPs_128098 0 0 1 0 1 UBE3C chr7:157046836 5'GT 157046836 Upstream 66bp
chr2 234072440 234072440 1 + C T SKCM 234072439 + 234072419 234072459 41 ACGACTCTGCGGACTACATCCCCCATGACATTTACGTGATC ACGACTCTGCGGACTACATCCTCCATGACATTTACGTGATC < 41bp 0.404808524670732 0.703310711478744 0.022778511 0.9699822 prediction 0.406621422957488 Functional Gain - INPP5D ENSG00000168918 CDS Human protein_coding chr2:234072439 chr2:234072440 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_128101 0 0 0 0 1 INPP5D chr2:234072353 3'AG 234072353 Downstream 88bp
chr3 138668430 138668430 1 + C T SKCM 138668429 + 138668409 138668449 41 GGAAGGGCTGGAATCGGTCTCCCCAAGATGTGCCTTCACAT GGAAGGGCTGGAATCGGTCTCTCCAAGATGTGCCTTCACAT < 41bp 0.643219696778443 0.846527828598568 0.14529574 0.9584098 prediction 0.406616263640249 Functional Gain - FOXL2NB ENSG00000206262 CDS Human protein_coding chr3:138668429 chr3:138668430 nonsynonymous SNV 0.005 3 22 hm5C_associated_SNPs_128103 0 0 0 0 2 FOXL2NB chr3:138668354 3'AG 138668354 Downstream 77bp
chr3 138668430 138668430 1 + C T SKCM 138668429 + 138668409 138668449 41 GGAAGGGCTGGAATCGGTCTCCCCAAGATGTGCCTTCACAT GGAAGGGCTGGAATCGGTCTCTCCAAGATGTGCCTTCACAT < 41bp 0.643219696778443 0.846527828598568 0.14529574 0.9584098 prediction 0.406616263640249 Functional Gain - FOXL2NB ENSG00000206262 CDS Human protein_coding chr3:138668429 chr3:138668430 nonsynonymous SNV 0.005 3 22 hm5C_associated_SNPs_128103 0 0 0 0 2 FOXL2NB chr3:138668362 3'AG 138668362 Downstream 69bp
chr11 1594228 1594228 1 + C A rs373089991 1594224 + 1594204 1594244 41 GGGCTGTTGAGGGGCCGCACCCCGCCGACCGCTGTGGGAAC GGGCTGTTGAGGGGCCGCACCCCGACGACCGCTGTGGGAAC < 41bp 0.350794351029456 0.703290084193442 0.42191264 0.35262758 prediction 0.406580168386884 Functional Gain - KRTAP5-AS1 ENSG00000233930 ncRNA_exonic Human antisense chr11:1594224 chr11:1594228 . . 0 25 hm5C_associated_SNPs_128107 0 0 1 0 1 KRTAP5-AS1 chr11:1594298 5'GT 1594298 Upstream 71bp
chrX 150911658 150911658 1 + T A UCEC 150911656 + 150911636 150911676 41 TTCAAGCTGGATGTGGCTTCCATCATCCCCACTGACCTGAT TTCAAGCTGGATGTGGCTTCCAACATCCCCACTGACCTGAT < 41bp 0.539071422294932 0.742354044320667 0.06571904 0.0768795 prediction 0.40656524405147 Functional Gain - CNGA2 ENSG00000183862 CDS Human protein_coding chrX:150911656 chrX:150911658 nonsynonymous SNV 0.992 3 23 hm5C_associated_SNPs_128111 0 0 0 0 1 CNGA2 chrX:150911565 3'AG 150911565 Downstream 94bp
chr10 102749475 102749475 1 + C A UCEC 102749471 + 102749451 102749491 41 TTGTGTTCCCAGGGGGTGAACACACTGTGGGGTAGCTTCGA TTGTGTTCCCAGGGGGTGAACACAATGTGGGGTAGCTTCGA < 41bp 0.28226524080034 0.703278345788645 0.43031764 0.64711374 prediction 0.406556691577291 Functional Gain - TWNK ENSG00000107815 CDS Human protein_coding chr10:102749471 chr10:102749475 nonsynonymous SNV 0.997 5 25 hm5C_associated_SNPs_128116 0 0 1 0 1 TWNK chr10:102749401 3'AG 102749401 Downstream 75bp
chr15 72104149 72104149 1 + C T COAD 72104148 + 72104128 72104168 41 TGCCCCGTGGACAAGGCCCACCGCAACCAGTGCCAGGCCTG TGCCCCGTGGACAAGGCCCACTGCAACCAGTGCCAGGCCTG < 41bp 0.597096425002311 0.800370835085242 0.16974047 0.39576215 prediction 0.406548820165861 Functional Gain - NR2E3 ENSG00000031544 ncRNA_exonic Human other chr15:72104148 chr15:72104149 . 0.999 3 22 hm5C_associated_SNPs_128118 0 0 0 0 2 NR2E3 chr15:72104106 3'AG 72104106 Downstream 44bp
chr15 72104149 72104149 1 + C T COAD 72104148 + 72104128 72104168 41 TGCCCCGTGGACAAGGCCCACCGCAACCAGTGCCAGGCCTG TGCCCCGTGGACAAGGCCCACTGCAACCAGTGCCAGGCCTG < 41bp 0.597096425002311 0.800370835085242 0.16974047 0.39576215 prediction 0.406548820165861 Functional Gain - NR2E3 ENSG00000031544 ncRNA_exonic Human other chr15:72104148 chr15:72104149 . 0.999 3 22 hm5C_associated_SNPs_128118 0 0 0 0 2 NR2E3 chr15:72104209 5'GT 72104209 Upstream 61bp
chr10 5415694 5415694 1 + C T STAD 5415693 + 5415673 5415713 41 TGCAGGGAGAGATGCTGATGCCGGTCCACTTCCTGCTGCTC TGCAGGGAGAGATGCTGATGCTGGTCCACTTCCTGCTGCTC < 41bp 0.524591524568876 0.727863201064674 0.5765125 0.40785646 prediction 0.406543352991597 Functional Gain - UCN3 ENSG00000178473 CDS Human protein_coding chr10:5415693 chr10:5415694 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_128121 0 0 0 0 1 UCN3 chr10:5415678 3'AG 5415678 Downstream 17bp
chr2 27261056 27261056 1 + A G UCEC 27261053 + 27261033 27261073 41 AGTGCCTGACGGTGGACCCCCTCAGTGCCAGCGTCTGGAGG AGTGCCTGACGGTGGACCCCCTCGGTGCCAGCGTCTGGAGG < 41bp 0.638650976846451 0.841922198613258 0.09677768 0.07160461 prediction 0.406542443533615 Functional Gain - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27261053 chr2:27261056 nonsynonymous SNV 0.649 4 24 hm5C_associated_SNPs_128123 0 0 1 1 1 TMEM214 chr2:27261014 3'AG 27261014 Downstream 43bp
chr22 32198757 32198757 1 + C T UCEC 32198756 + 32198736 32198776 41 GATGTCAGTGGTGATCACGCCCGGGGTGGGTGTCTTTGAAG GATGTCAGTGGTGATCACGCCTGGGGTGGGTGTCTTTGAAG < 41bp 0.588345517233896 0.791615554626905 0.8356394 0.86205506 prediction 0.406540074786018 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32198756 chr22:32198757 synonymous SNV . 0 22 hm5C_associated_SNPs_128124 1 0 0 0 1 DEPDC5 chr22:32198824 5'GT 32198824 Upstream 68bp
chr9 132640637 132640637 1 + C T rs568535068 132640636 + 132640616 132640656 41 GTTGAACAAGGCCTTCCAGGCCGAGGAGTCGCCGGGCGTCA GTTGAACAAGGCCTTCCAGGCTGAGGAGTCGCCGGGCGTCA < 41bp 0.457777191149489 0.703268657647543 0.4168033 0.30810565 prediction 0.406537315295086 Functional Gain - USP20 ENSG00000136878 CDS Human protein_coding chr9:132640636 chr9:132640637 synonymous SNV . 0 22 hm5C_associated_SNPs_128125 0 0 1 0 2 USP20 chr9:132640617 3'AG 132640617 Downstream 21bp
chr9 132640637 132640637 1 + C T rs568535068 132640636 + 132640616 132640656 41 GTTGAACAAGGCCTTCCAGGCCGAGGAGTCGCCGGGCGTCA GTTGAACAAGGCCTTCCAGGCTGAGGAGTCGCCGGGCGTCA < 41bp 0.457777191149489 0.703268657647543 0.4168033 0.30810565 prediction 0.406537315295086 Functional Gain - USP20 ENSG00000136878 CDS Human protein_coding chr9:132640636 chr9:132640637 synonymous SNV . 0 22 hm5C_associated_SNPs_128125 0 0 1 0 2 USP20 chr9:132640719 5'GT 132640719 Upstream 83bp
chr19 14720890 14720890 1 + A G LUSC 14720887 + 14720867 14720907 41 TCCATCCAGCTTCTGGGAGCCAGAGGAACCCAATAACATCC TCCATCCAGCTTCTGGGAGCCAGGGGAACCCAATAACATCC < 41bp 0.599280497776137 0.80254884406272 0.94533014 0.9456307 prediction 0.406536692573166 Functional Gain - CLEC17A ENSG00000187912 CDS Human protein_coding chr19:14720887 chr19:14720890 nonsynonymous SNV 0.626 0 24 hm5C_associated_SNPs_128127 0 0 0 1 1 CLEC17A chr19:14720876 3'AG 14720876 Downstream 15bp
chr3 113004240 113004240 1 + C A rs34600669 113004236 + 113004216 113004256 41 CAGGGGTCCCAAGTCTAGCCCGGACGAGGGCTCTTTCTTAT CAGGGGTCCCAAGTCTAGCCCGGAAGAGGGCTCTTTCTTAT < 41bp 0.298444519679296 0.703265807655014 0.28636453 0.34320286 prediction 0.406531615310028 Functional Gain - BOC ENSG00000144857 CDS Human protein_coding chr3:113004236 chr3:113004240 nonsynonymous SNV 0.030 0 25 hm5C_associated_SNPs_128130 0 0 0 0 1 BOC chr3:113004219 3'AG 113004219 Downstream 22bp
chrX 38525539 38525539 1 + T C LUSC 38525537 + 38525517 38525557 41 TTGGATGCTTTGCTACATGTCGTGGTAGCCCATGGATGCTG TTGGATGCTTTGCTACATGTCGCGGTAGCCCATGGATGCTG < 41bp 0.66474695422817 0.868008821273274 0.88304365 0.86048806 prediction 0.406523734090209 Functional Gain - TSPAN7 ENSG00000156298;ENSG00000250349 CDS Human other chrX:38525537 chrX:38525539 synonymous SNV . 0 23 hm5C_associated_SNPs_128133 0 0 1 0 1 TSPAN7 chrX:38525563 5'GT 38525563 Upstream 25bp
chr15 67457694 67457694 1 + A G LAML 67457691 + 67457671 67457711 41 CCCGAAAACACTAACTTCCCCGCAGGCATCGAGCCCCAGAG CCCGAAAACACTAACTTCCCCGCGGGCATCGAGCCCCAGAG < 41bp 0.632756295769348 0.836013549133204 0.04586196 0.2068601 prediction 0.406514506727712 Functional Gain - SMAD3 ENSG00000166949 CDS Human protein_coding chr15:67457691 chr15:67457694 synonymous SNV . 0 24 hm5C_associated_SNPs_128135 0 0 1 0 1 SMAD3 chr15:67457722 5'GT 67457722 Upstream 29bp
chr2 44079798 44079798 1 + T A LUSC 44079794 + 44079774 44079814 41 ACAGCTTCACAGCCCACAACCTGGTGAAGACCTTGTCCAGG ACAGCTTCACAGCCCACAACCTGGAGAAGACCTTGTCCAGG < 41bp 0.708628138835809 0.911875468422938 0.75318635 0.75075066 prediction 0.406494659174258 Functional Gain - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44079794 chr2:44079798 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_128137 0 0 0 0 1 ABCG8 chr2:44079738 3'AG 44079738 Downstream 61bp
chr19 49079223 49079223 1 + C A LUSC 49079219 + 49079199 49079239 41 CAGAAGTTGCCAGGTGAATACTTCCGGTACAAGGGCGTCCC CAGAAGTTGCCAGGTGAATACTTCAGGTACAAGGGCGTCCC < 41bp 0.283465593139131 0.703241761228158 0.30234572 0.4352153 prediction 0.406483522456316 Functional Gain - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49079219 chr19:49079223 synonymous SNV . 0 25 hm5C_associated_SNPs_128143 0 0 0 0 1 SULT2B1 chr19:49079198 3'AG 49079198 Downstream 26bp
chr17 66038409 66038409 1 + T C UCEC 66038406 + 66038386 66038426 41 CCATCCCAGCATTCATTTCTCTGTTGGCATCTCCCCATGCT CCATCCCAGCATTCATTTCTCTGCTGGCATCTCCCCATGCT < 41bp 0.55619709864763 0.759421614034872 0.2867077 0.4585826 prediction 0.406449030774485 Functional Gain - KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66038406 chr17:66038409 synonymous SNV . 0 24 hm5C_associated_SNPs_128152 0 0 1 0 1 KPNA2 chr17:66038469 5'GT 66038469 Upstream 61bp
chr19 44771205 44771205 1 + C A LUAD 44771204 + 44771184 44771224 41 CCACCAGCCTGGCCCAAGACCCCAGAATTCATCGCCCTGGT CCACCAGCCTGGCCCAAGACCACAGAATTCATCGCCCTGGT < 41bp 0.451341817725163 0.703217803328518 0.15954039 0.16711208 prediction 0.406435606657036 Functional Gain - ZNF233 ENSG00000159915 CDS Human protein_coding chr19:44771204 chr19:44771205 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_128154 0 0 0 0 1 ZNF233 chr19:44771297 5'GT 44771297 Upstream 93bp
chr9 131011001 131011001 1 + C A LIHC 131011000 + 131010980 131011020 41 AGACCGTGAGGGACCTCATGCCCAAGACCATCATGCACCTC AGACCGTGAGGGACCTCATGCACAAGACCATCATGCACCTC < 41bp 0.434266657266208 0.703212585581715 0.011974722 0.033373386 prediction 0.40642517116343 Functional Gain - DNM1 ENSG00000106976 CDS Human protein_coding chr9:131011000 chr9:131011001 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_128156 0 0 1 2 1 DNM1 chr9:131011032 5'GT 131011032 Upstream 32bp
chr1 209933636 209933636 1 + C A LUAD 209933635 + 209933615 209933655 41 CAAAGCGCAGCATCCCCAGGCCAGGGAGCAAGGGCCCTCCA CAAAGCGCAGCATCCCCAGGCAAGGGAGCAAGGGCCCTCCA < 41bp 0.652122823474331 0.85533337327382 0.44958872 0.87407804 prediction 0.406421099598979 Functional Gain - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209933635 chr1:209933636 synonymous SNV . 0 22 hm5C_associated_SNPs_128157 0 0 0 0 2 TRAF3IP3 chr1:209933669 5'GT 209933669 Upstream 34bp
chr1 209933636 209933636 1 + C A LUAD 209933635 + 209933615 209933655 41 CAAAGCGCAGCATCCCCAGGCCAGGGAGCAAGGGCCCTCCA CAAAGCGCAGCATCCCCAGGCAAGGGAGCAAGGGCCCTCCA < 41bp 0.652122823474331 0.85533337327382 0.44958872 0.87407804 prediction 0.406421099598979 Functional Gain - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209933635 chr1:209933636 synonymous SNV . 0 22 hm5C_associated_SNPs_128157 0 0 0 0 2 TRAF3IP3 chr1:209933729 5'GT 209933729 Upstream 94bp
chr13 115070306 115070306 1 + C T UCEC 115070305 + 115070285 115070325 41 TATGATCCAGGAGCTCGCTTCCGAGCGCGAGAGTGTGGCGG TATGATCCAGGAGCTCGCTTCTGAGCGCGAGAGTGTGGCGG < 41bp 0.458803522972576 0.703208086843753 0.8536675 0.46157095 prediction 0.406416173687507 Functional Gain - UPF3A ENSG00000169062 CDS Human protein_coding chr13:115070305 chr13:115070306 stopgain 0.011 1 22 hm5C_associated_SNPs_128158 0 0 1 0 1 UPF3A chr13:115070264 3'AG 115070264 Downstream 43bp
chr9 894156 894156 1 + C G rs34946058 894155 + 894135 894175 41 GAACAGCCTTCGGGGCCTCCCCGGACCTTATGTGCCTGGTC GAACAGCCTTCGGGGCCTCCCGGGACCTTATGTGCCTGGTC < 41bp 0.701658182237547 0.90486321294226 0.35538894 0.9224528 prediction 0.406410061409425 Functional Gain - DMRT1 ENSG00000137090 CDS Human protein_coding chr9:894155 chr9:894156 synonymous SNV . 0 22 hm5C_associated_SNPs_128160 0 0 0 0 1 DMRT1 chr9:894195 5'GT 894195 Upstream 40bp
chr1 63067494 63067494 1 + T A rs77871363 63067492 + 63067472 63067512 41 AGAGGTGAACATACAAGTGGCATGTATGCCATCAGACCCAG AGAGGTGAACATACAAGTGGCAAGTATGCCATCAGACCCAG < 41bp 0.529966506495005 0.733170144263015 0.10824621 0.080658585 prediction 0.40640727553602 Functional Gain - ANGPTL3 ENSG00000132855 CDS Human protein_coding chr1:63067492 chr1:63067494 nonsynonymous SNV 0.066 1 23 hm5C_associated_SNPs_128161 0 0 0 0 2 ANGPTL3 chr1:63067440 3'AG 63067440 Downstream 55bp
chr1 63067494 63067494 1 + T A rs77871363 63067492 + 63067472 63067512 41 AGAGGTGAACATACAAGTGGCATGTATGCCATCAGACCCAG AGAGGTGAACATACAAGTGGCAAGTATGCCATCAGACCCAG < 41bp 0.529966506495005 0.733170144263015 0.10824621 0.080658585 prediction 0.40640727553602 Functional Gain - ANGPTL3 ENSG00000132855 CDS Human protein_coding chr1:63067492 chr1:63067494 nonsynonymous SNV 0.066 1 23 hm5C_associated_SNPs_128161 0 0 0 0 2 ANGPTL3 chr1:63067553 5'GT 63067553 Upstream 60bp
chr5 94927146 94927146 1 + A G LGG 94927143 + 94927123 94927163 41 TTCATCAATTAGATCTTCTTCAGAAAACTATTGTCATATAC TTCATCAATTAGATCTTCTTCAGGAAACTATTGTCATATAC < 41bp 0.577176734738764 0.780379741638035 0.18123835 0.22400668 prediction 0.406406013798543 Functional Gain - ARSK ENSG00000164291 CDS Human protein_coding chr5:94927143 chr5:94927146 nonsynonymous SNV 0.924 1 24 hm5C_associated_SNPs_128162 0 0 1 0 1 ARSK chr5:94927105 3'AG 94927105 Downstream 42bp
chr12 97334223 97334223 1 + A G LIHC 97334220 + 97334200 97334240 41 CATAAACACAGACACTTTATCTAAGGAAACAGACAGTGGAA CATAAACACAGACACTTTATCTAGGGAAACAGACAGTGGAA < 41bp 0.584820484323854 0.788023250397059 0.20697427 0.69067293 prediction 0.40640553214641 Functional Gain - NEDD1 ENSG00000139350 CDS Human protein_coding chr12:97334220 chr12:97334223 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_128163 0 0 1 0 2 NEDD1 chr12:97334187 3'AG 97334187 Downstream 37bp
chr12 97334223 97334223 1 + A G LIHC 97334220 + 97334200 97334240 41 CATAAACACAGACACTTTATCTAAGGAAACAGACAGTGGAA CATAAACACAGACACTTTATCTAGGGAAACAGACAGTGGAA < 41bp 0.584820484323854 0.788023250397059 0.20697427 0.69067293 prediction 0.40640553214641 Functional Gain - NEDD1 ENSG00000139350 CDS Human protein_coding chr12:97334220 chr12:97334223 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_128163 0 0 1 0 2 NEDD1 chr12:97334315 5'GT 97334315 Upstream 93bp
chr9 136320668 136320668 1 + C T rs148500446 136320667 + 136320647 136320687 41 GCCCGGGGCCTGCTCTTCTCCCCGGCTCCCCAGCCTCGGCG GCCCGGGGCCTGCTCTTCTCCTCGGCTCCCCAGCCTCGGCG < 41bp 0.590330965636377 0.793529613923712 0.51730543 0.5194252 prediction 0.40639729657467 Functional Gain - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136320667 chr9:136320668 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_128165 0 0 0 0 1 ADAMTS13 chr9:136320725 5'GT 136320725 Upstream 58bp
chr1 53930371 53930371 1 + T C COAD 53930368 + 53930348 53930388 41 CCTGCCGCCGCCGCCGCCGCCACTGCCGCCCCTTCCACCGC CCTGCCGCCGCCGCCGCCGCCACCGCCGCCCCTTCCACCGC < 41bp 0.515847254600898 0.719044963402091 0.48136875 0.35588658 prediction 0.406395417602387 Functional Gain - DMRTB1 ENSG00000143006 CDS Human protein_coding chr1:53930368 chr1:53930371 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_128166 0 0 0 0 1 DMRTB1 chr1:53930310 3'AG 53930310 Downstream 62bp
chr19 35837089 35837089 1 + C T UCEC 35837088 + 35837068 35837108 41 CAGAGATGCAGAGACCTCCCCCGGACTGCGATGACACGGTC CAGAGATGCAGAGACCTCCCCTGGACTGCGATGACACGGTC < 41bp 0.639668254046688 0.842864216973008 0.10299829 0.15569076 prediction 0.40639192585264 Functional Gain - CD22 ENSG00000012124 CDS Human protein_coding chr19:35837088 chr19:35837089 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_128168 0 0 0 0 2 CD22 chr19:35837054 3'AG 35837054 Downstream 36bp
chr19 35837089 35837089 1 + C T UCEC 35837088 + 35837068 35837108 41 CAGAGATGCAGAGACCTCCCCCGGACTGCGATGACACGGTC CAGAGATGCAGAGACCTCCCCTGGACTGCGATGACACGGTC < 41bp 0.639668254046688 0.842864216973008 0.10299829 0.15569076 prediction 0.40639192585264 Functional Gain - CD22 ENSG00000012124 CDS Human protein_coding chr19:35837088 chr19:35837089 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_128168 0 0 0 0 2 CD22 chr19:35837138 5'GT 35837138 Upstream 50bp
chr15 38776495 38776495 1 + A G rs544203250 38776492 + 38776472 38776512 41 TGCCTGACAGGGGAGGCCGGCCGAATGAAATTGAACCACCA TGCCTGACAGGGGAGGCCGGCCGGATGAAATTGAACCACCA < 41bp 0.585173260663346 0.788368927209707 0.41468874 0.7909817 prediction 0.406391333092721 Functional Gain - FAM98B ENSG00000171262 CDS Human protein_coding chr15:38776492 chr15:38776495 nonsynonymous SNV 0.994 0 24 hm5C_associated_SNPs_128169 0 0 1 0 1 FAM98B chr15:38776456 3'AG 38776456 Downstream 40bp
chr3 52233298 52233298 1 + T G BLCA 52233294 + 52233274 52233314 41 GCCGCTGCCCATTCTTATCCCGAGTCCCCCAGGCCTTTCTG GCCGCTGCCCATTCTTATCCCGAGGCCCCCAGGCCTTTCTG < 41bp 0.560942954952931 0.764132612533106 0.28369588 0.9015641 prediction 0.40637931516035 Functional Gain - ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233294 chr3:52233298 nonsynonymous SNV 0.963 2 25 hm5C_associated_SNPs_128171 0 0 1 0 2 ALAS1 chr3:52233226 3'AG 52233226 Downstream 73bp
chr3 52233298 52233298 1 + T G BLCA 52233294 + 52233274 52233314 41 GCCGCTGCCCATTCTTATCCCGAGTCCCCCAGGCCTTTCTG GCCGCTGCCCATTCTTATCCCGAGGCCCCCAGGCCTTTCTG < 41bp 0.560942954952931 0.764132612533106 0.28369588 0.9015641 prediction 0.40637931516035 Functional Gain - ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233294 chr3:52233298 nonsynonymous SNV 0.963 2 25 hm5C_associated_SNPs_128171 0 0 1 0 2 ALAS1 chr3:52233237 3'AG 52233237 Downstream 62bp
chr16 23383105 23383105 1 + T C LUSC 23383103 + 23383083 23383123 41 CCCTCTAAACACAGGACAAGCTTCAGCGCATGGGGGAGCCC CCCTCTAAACACAGGACAAGCTCCAGCGCATGGGGGAGCCC < 41bp 0.416312845441909 0.703189360040667 0.116508245 0.873595 prediction 0.406378720081333 Functional Gain - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23383103 chr16:23383105 synonymous SNV . 0 23 hm5C_associated_SNPs_128172 0 0 0 0 2 SCNN1B chr16:23383097 3'AG 23383097 Downstream 9bp
chr16 23383105 23383105 1 + T C LUSC 23383103 + 23383083 23383123 41 CCCTCTAAACACAGGACAAGCTTCAGCGCATGGGGGAGCCC CCCTCTAAACACAGGACAAGCTCCAGCGCATGGGGGAGCCC < 41bp 0.416312845441909 0.703189360040667 0.116508245 0.873595 prediction 0.406378720081333 Functional Gain - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23383103 chr16:23383105 synonymous SNV . 0 23 hm5C_associated_SNPs_128172 0 0 0 0 2 SCNN1B chr16:23383204 5'GT 23383204 Upstream 100bp
chr11 43515398 43515398 1 + C T UCEC 43515397 + 43515377 43515417 41 GAGTTTGTCCCAGCCAAGAACCGAATCCAGACCATCCAGTG GAGTTTGTCCCAGCCAAGAACTGAATCCAGACCATCCAGTG < 41bp 0.452544767951874 0.703182699860087 0.076732576 0.09259114 prediction 0.406365399720174 Functional Gain - TTC17 ENSG00000052841 CDS Human protein_coding chr11:43515397 chr11:43515398 stopgain 0.998 1 22 hm5C_associated_SNPs_128173 0 0 0 0 1 TTC17 chr11:43515323 3'AG 43515323 Downstream 76bp
chr1 45268774 45268774 1 + C G LUAD 45268770 + 45268750 45268790 41 GGCCGCCATCCTTCGGGCCTCACCCCGAGACCGCCCCTCTA GGCCGCCATCCTTCGGGCCTCACCGCGAGACCGCCCCTCTA < 41bp 0.398608035236773 0.703177272352311 0.08807045 0.37073314 prediction 0.406354544704623 Functional Gain - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45268770 chr1:45268774 synonymous SNV . 0 25 hm5C_associated_SNPs_128174 0 0 0 0 1 PLK3 chr1:45268825 5'GT 45268825 Upstream 52bp
chr1 150437071 150437071 1 + A G GBM 150437068 + 150437048 150437088 41 CCAGCAACCTCACCAGTGGCCTGAAAACACCTGCACCTGCC CCAGCAACCTCACCAGTGGCCTGGAAACACCTGCACCTGCC < 41bp 0.615144716149687 0.818318195248624 0.08604947 0.24682608 prediction 0.406346958197874 Functional Gain - RPRD2 ENSG00000163125 CDS Human protein_coding chr1:150437068 chr1:150437071 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_128177 0 0 1 0 1 RPRD2 chr1:150437003 3'AG 150437003 Downstream 69bp
chr16 56901089 56901089 1 + C T UCEC 56901088 + 56901068 56901108 41 CACCAGCAGCGAGAAGAACCCCGAGGAGCCAGTGCGCTTCG CACCAGCAGCGAGAAGAACCCTGAGGAGCCAGTGCGCTTCG < 41bp 0.612979366568286 0.816152076781462 0.23404968 0.1950033 prediction 0.406345420426352 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56901088 chr16:56901089 synonymous SNV . 0 22 hm5C_associated_SNPs_128178 0 0 0 0 1 SLC12A3 chr16:56901128 5'GT 56901128 Upstream 40bp
chr16 1779556 1779556 1 + C T UCEC 1779555 + 1779535 1779575 41 GGTCGGAGGAAACAGCCAGACCGAGAGCAGCCTGCCGGGGC GGTCGGAGGAAACAGCCAGACTGAGAGCAGCCTGCCGGGGC < 41bp 0.45797503897796 0.703170766387415 0.29861528 0.2045578 prediction 0.406341532774829 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1779555 chr16:1779556 synonymous SNV . 0 22 hm5C_associated_SNPs_128180 0 0 1 0 2 MAPK8IP3 chr16:1779488 3'AG 1779488 Downstream 69bp
chr16 1779556 1779556 1 + C T UCEC 1779555 + 1779535 1779575 41 GGTCGGAGGAAACAGCCAGACCGAGAGCAGCCTGCCGGGGC GGTCGGAGGAAACAGCCAGACTGAGAGCAGCCTGCCGGGGC < 41bp 0.45797503897796 0.703170766387415 0.29861528 0.2045578 prediction 0.406341532774829 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1779555 chr16:1779556 synonymous SNV . 0 22 hm5C_associated_SNPs_128180 0 0 1 0 2 MAPK8IP3 chr16:1779579 5'GT 1779579 Upstream 24bp
chr3 52548456 52548456 1 + C T COAD 52548455 + 52548435 52548475 41 ACCCTGCGGAAGGGTGGACACCGCAACTCCCTCCTGGGCCC ACCCTGCGGAAGGGTGGACACTGCAACTCCCTCCTGGGCCC < 41bp 0.623157642025364 0.826316451717485 0.8056142 0.73800516 prediction 0.406317619384243 Functional Gain - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52548455 chr3:52548456 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_128184 0 0 0 0 2 STAB1 chr3:52548381 3'AG 52548381 Downstream 76bp
chr3 52548456 52548456 1 + C T COAD 52548455 + 52548435 52548475 41 ACCCTGCGGAAGGGTGGACACCGCAACTCCCTCCTGGGCCC ACCCTGCGGAAGGGTGGACACTGCAACTCCCTCCTGGGCCC < 41bp 0.623157642025364 0.826316451717485 0.8056142 0.73800516 prediction 0.406317619384243 Functional Gain - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52548455 chr3:52548456 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_128184 0 0 0 0 2 STAB1 chr3:52548512 5'GT 52548512 Upstream 57bp
chr12 133197878 133197878 1 + C A ESCA 133197877 + 133197857 133197897 41 AAGATCAATGGCACCACCACCCGCACGCTCATCAAGGCCTA AAGATCAATGGCACCACCACCAGCACGCTCATCAAGGCCTA < 41bp 0.444375815144185 0.703157647341673 0.099668175 0.32256943 prediction 0.406315294683345 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133197877 chr12:133197878 nonsynonymous SNV 0.077 4 22 hm5C_associated_SNPs_128185 0 0 0 0 3 P2RX2 chr12:133197841 3'AG 133197841 Downstream 38bp
chr12 133197878 133197878 1 + C A ESCA 133197877 + 133197857 133197897 41 AAGATCAATGGCACCACCACCCGCACGCTCATCAAGGCCTA AAGATCAATGGCACCACCACCAGCACGCTCATCAAGGCCTA < 41bp 0.444375815144185 0.703157647341673 0.099668175 0.32256943 prediction 0.406315294683345 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133197877 chr12:133197878 nonsynonymous SNV 0.077 4 22 hm5C_associated_SNPs_128185 0 0 0 0 3 P2RX2 chr12:133197931 5'GT 133197931 Upstream 54bp
chr12 133197878 133197878 1 + C A ESCA 133197877 + 133197857 133197897 41 AAGATCAATGGCACCACCACCCGCACGCTCATCAAGGCCTA AAGATCAATGGCACCACCACCAGCACGCTCATCAAGGCCTA < 41bp 0.444375815144185 0.703157647341673 0.099668175 0.32256943 prediction 0.406315294683345 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133197877 chr12:133197878 nonsynonymous SNV 0.077 4 22 hm5C_associated_SNPs_128185 0 0 0 0 3 P2RX2 chr12:133197950 5'GT 133197950 Upstream 73bp
chr8 43159910 43159910 1 + C T SARC 43159909 + 43159889 43159929 41 ACTCTTCTGGAAATAGCAATCCAGGTAAGACTTCTGATAGT ACTCTTCTGGAAATAGCAATCTAGGTAAGACTTCTGATAGT < 41bp 0.518589827415789 0.721745758142257 0.8699017 0.54290986 prediction 0.406311861452936 Functional Gain - POTEA ENSG00000188877 ncRNA_exonic Human polymorphic_pseudogene chr8:43159909 chr8:43159910 . . 0 22 hm5C_associated_SNPs_128187 0 0 0 0 2 POTEA chr8:43159842 3'AG 43159842 Downstream 69bp
chr8 43159910 43159910 1 + C T SARC 43159909 + 43159889 43159929 41 ACTCTTCTGGAAATAGCAATCCAGGTAAGACTTCTGATAGT ACTCTTCTGGAAATAGCAATCTAGGTAAGACTTCTGATAGT < 41bp 0.518589827415789 0.721745758142257 0.8699017 0.54290986 prediction 0.406311861452936 Functional Gain - POTEA ENSG00000188877 ncRNA_exonic Human polymorphic_pseudogene chr8:43159909 chr8:43159910 . . 0 22 hm5C_associated_SNPs_128187 0 0 0 0 2 POTEA chr8:43159912 5'GT 43159912 Upstream 3bp
chr1 55172189 55172189 1 + A G LAML 55172186 + 55172166 55172206 41 AGAACTCACGGGCCTCCCTCCGGAAGTGCTCAGTCATGTTC AGAACTCACGGGCCTCCCTCCGGGAGTGCTCAGTCATGTTC < 41bp 0.62092758834684 0.824081695776648 0.8631532 0.9109144 prediction 0.406308214859618 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55172186 chr1:55172189 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_128188 0 0 0 0 2 MROH7 chr1:55172108 3'AG 55172108 Downstream 82bp
chr1 55172189 55172189 1 + A G LAML 55172186 + 55172166 55172206 41 AGAACTCACGGGCCTCCCTCCGGAAGTGCTCAGTCATGTTC AGAACTCACGGGCCTCCCTCCGGGAGTGCTCAGTCATGTTC < 41bp 0.62092758834684 0.824081695776648 0.8631532 0.9109144 prediction 0.406308214859618 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55172186 chr1:55172189 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_128188 0 0 0 0 2 MROH7 chr1:55172210 5'GT 55172210 Upstream 22bp
chr10 5948548 5948548 1 + C T SKCM 5948547 + 5948527 5948567 41 GTGGAAGACCTCTATTGGAACCTGAGCTTGGTGTGCCACTT GTGGAAGACCTCTATTGGAACTTGAGCTTGGTGTGCCACTT < 41bp 0.450668479579035 0.703145206301626 0.62323093 0.5569953 prediction 0.406290412603253 Functional Gain - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5948547 chr10:5948548 synonymous SNV . 0 22 hm5C_associated_SNPs_128193 0 0 1 0 1 FBXO18 chr10:5948595 5'GT 5948595 Upstream 48bp
chr1 12819261 12819261 1 + C A UCEC 12819260 + 12819240 12819280 41 CAGGGGCTACCTTACAAACACCTGATCACCCACCACCAGGA CAGGGGCTACCTTACAAACACATGATCACCCACCACCAGGA < 41bp 0.432897613066761 0.703143999177957 0.19715813 0.2219168 prediction 0.406287998355915 Functional Gain - C1orf158 ENSG00000157330 CDS Human protein_coding chr1:12819260 chr1:12819261 nonsynonymous SNV 0.830 4 22 hm5C_associated_SNPs_128194 0 0 0 0 1 C1orf158 chr1:12819243 3'AG 12819243 Downstream 19bp
chr19 18975031 18975031 1 + C T SKCM 18975030 + 18975010 18975050 41 ATGCCCGGGAGGCCATCATCCCAGGCTCCGTCTATGATCGG ATGCCCGGGAGGCCATCATCCTAGGCTCCGTCTATGATCGG < 41bp 0.447110453018376 0.703136791280272 0.88408685 0.8539281 prediction 0.406273582560543 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18975030 chr19:18975031 nonsynonymous SNV 0.951 3 22 hm5C_associated_SNPs_128198 0 0 1 0 1 UPF1 chr19:18974979 3'AG 18974979 Downstream 53bp
chrX 79281115 79281115 1 + A G UCEC 79281112 + 79281092 79281132 41 GTTTTTTCAGGTACGTCTATCACAGCTCACAGTGGATGGTA GTTTTTTCAGGTACGTCTATCACGGCTCACAGTGGATGGTA < 41bp 0.617449443549936 0.820579147958585 0.42530167 0.84310174 prediction 0.406259408817298 Functional Gain - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79281112 chrX:79281115 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_128204 0 0 0 0 1 TBX22 chrX:79281102 3'AG 79281102 Downstream 14bp
chr12 25254118 25254118 1 + C T UCEC 25254117 + 25254097 25254137 41 TTTTTCTCTTGCTAGGAAAGCCGGGTTAGTAAAGCAGTTGA TTTTTCTCTTGCTAGGAAAGCTGGGTTAGTAAAGCAGTTGA < 41bp 0.465835588019521 0.703129054210685 0.8525238 0.6379045 prediction 0.40625810842137 Functional Gain - LRMP ENSG00000118308 CDS Human protein_coding chr12:25254117 chr12:25254118 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_128206 0 0 0 0 1 LRMP chr12:25254112 3'AG 25254112 Downstream 7bp
chr14 77719649 77719649 1 + C T SKCM 77719648 + 77719628 77719668 41 ACCACCTCTCCCTGCTGCAGCCCGAGGAGGAGGAGATCCAG ACCACCTCTCCCTGCTGCAGCTCGAGGAGGAGGAGATCCAG < 41bp 0.440807648346469 0.703124550488395 0.24800453 0.30361417 prediction 0.406249100976791 Functional Gain - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77719648 chr14:77719649 nonsynonymous SNV 0.262 0 22 hm5C_associated_SNPs_128207 0 0 0 0 2 TMEM63C chr14:77719648 3'AG 77719648 Downstream 2bp
chr14 77719649 77719649 1 + C T SKCM 77719648 + 77719628 77719668 41 ACCACCTCTCCCTGCTGCAGCCCGAGGAGGAGGAGATCCAG ACCACCTCTCCCTGCTGCAGCTCGAGGAGGAGGAGATCCAG < 41bp 0.440807648346469 0.703124550488395 0.24800453 0.30361417 prediction 0.406249100976791 Functional Gain - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77719648 chr14:77719649 nonsynonymous SNV 0.262 0 22 hm5C_associated_SNPs_128207 0 0 0 0 2 TMEM63C chr14:77719719 5'GT 77719719 Upstream 71bp
chr3 158531790 158531790 1 + T C COAD 158531787 + 158531767 158531807 41 ACATGAACCTCATGGGATGGCTGTATTCTAAGATTGAAGCT ACATGAACCTCATGGGATGGCTGCATTCTAAGATTGAAGCT < 41bp 0.571855290117392 0.774969252995664 0.091243625 0.11698803 prediction 0.406227925756543 Functional Gain - MFSD1 ENSG00000118855 CDS Human protein_coding chr3:158531787 chr3:158531790 nonsynonymous SNV 0.926 3 24 hm5C_associated_SNPs_128211 0 0 1 0 2 MFSD1 chr3:158531754 3'AG 158531754 Downstream 37bp
chr3 158531790 158531790 1 + T C COAD 158531787 + 158531767 158531807 41 ACATGAACCTCATGGGATGGCTGTATTCTAAGATTGAAGCT ACATGAACCTCATGGGATGGCTGCATTCTAAGATTGAAGCT < 41bp 0.571855290117392 0.774969252995664 0.091243625 0.11698803 prediction 0.406227925756543 Functional Gain - MFSD1 ENSG00000118855 CDS Human protein_coding chr3:158531787 chr3:158531790 nonsynonymous SNV 0.926 3 24 hm5C_associated_SNPs_128211 0 0 1 0 2 MFSD1 chr3:158531856 5'GT 158531856 Upstream 67bp
chr1 119683356 119683356 1 + T G rs587679243 119683352 + 119683332 119683372 41 CGACTCCTGCTTGCTGGGCGCGGCTTGGGCCTCCAGGCTGC CGACTCCTGCTTGCTGGGCGCGGCGTGGGCCTCCAGGCTGC < 41bp 0.544829510624332 0.74794136763742 0.41938323 0.8786509 prediction 0.406223714026176 Functional Gain - LOC101929147 ENSG00000231365 ncRNA_exonic Human antisense chr1:119683352 chr1:119683356 . . 0 25 hm5C_associated_SNPs_128212 0 0 1 0 1 LOC101929147 chr1:119683416 5'GT 119683416 Upstream 61bp
chr2 37000939 37000939 1 + T C BLCA 37000936 + 37000916 37000956 41 AGTCAAATGTCCTTACAGATCTCTGGTCCACTGCCACCTAC AGTCAAATGTCCTTACAGATCTCCGGTCCACTGCCACCTAC < 41bp 0.572093647366918 0.775198816747413 0.06579262 0.17003345 prediction 0.40621033876099 Functional Gain - VIT ENSG00000205221 CDS Human protein_coding chr2:37000936 chr2:37000939 nonsynonymous SNV 0.077 0 24 hm5C_associated_SNPs_128213 0 0 0 0 1 VIT chr2:37000934 3'AG 37000934 Downstream 6bp
chr12 7864223 7864223 1 + C T BLCA 7864222 + 7864202 7864242 41 AGGGTCTCCACAAATGCTCACCGAAGAAAATTCCCGGGACG AGGGTCTCCACAAATGCTCACTGAAGAAAATTCCCGGGACG < 41bp 0.534715179485983 0.737820089395609 0.22218007 0.16301757 prediction 0.406209819819251 Functional Gain - DPPA3 ENSG00000187569 CDS Human protein_coding chr12:7864222 chr12:7864223 synonymous SNV . 0 22 hm5C_associated_SNPs_128214 0 0 0 0 1 DPPA3 chr12:7864248 5'GT 7864248 Upstream 26bp
chr15 44630445 44630445 1 + A G rs202050874 44630442 + 44630422 44630462 41 GTTACTTGGGCAGAACAAATCAAAAGAGGTGGTGATGCAGG GTTACTTGGGCAGAACAAATCAAGAGAGGTGGTGATGCAGG < 41bp 0.550784929377204 0.753888805651543 0.7740054 0.8746524 prediction 0.406207752548678 Functional Gain - CASC4 ENSG00000166734 CDS Human protein_coding chr15:44630442 chr15:44630445 synonymous SNV . 0 24 hm5C_associated_SNPs_128215 0 0 1 1 2 CASC4 chr15:44630435 3'AG 44630435 Downstream 11bp
chr15 44630445 44630445 1 + A G rs202050874 44630442 + 44630422 44630462 41 GTTACTTGGGCAGAACAAATCAAAAGAGGTGGTGATGCAGG GTTACTTGGGCAGAACAAATCAAGAGAGGTGGTGATGCAGG < 41bp 0.550784929377204 0.753888805651543 0.7740054 0.8746524 prediction 0.406207752548678 Functional Gain - CASC4 ENSG00000166734 CDS Human protein_coding chr15:44630442 chr15:44630445 synonymous SNV . 0 24 hm5C_associated_SNPs_128215 0 0 1 1 2 CASC4 chr15:44630515 5'GT 44630515 Upstream 71bp
chr11 65650988 65650988 1 + C T UCEC 65650987 + 65650967 65651007 41 CTAACCTCCTAGGGCTATTTCCGGCTGCACCGAGGGAGCAA CTAACCTCCTAGGGCTATTTCTGGCTGCACCGAGGGAGCAA < 41bp 0.59229796807009 0.795398600232911 0.92729187 0.36424467 prediction 0.406201264325642 Functional Gain - CTSW ENSG00000172543 CDS Human protein_coding chr11:65650987 chr11:65650988 nonsynonymous SNV 0.772 4 22 hm5C_associated_SNPs_128217 0 0 0 1 1 CTSW chr11:65650979 3'AG 65650979 Downstream 10bp
chr4 184626188 184626188 1 + T A HNSC 184626186 + 184626166 184626206 41 ACTGTCATCACTCTGCCGCACGTGATTGTGGAGAATATCCC ACTGTCATCACTCTGCCGCACGAGATTGTGGAGAATATCCC < 41bp 0.5190913493641 0.722191418762806 0.15804183 0.34154522 prediction 0.406200138797413 Functional Gain - TRAPPC11 ENSG00000168538 CDS Human protein_coding chr4:184626186 chr4:184626188 nonsynonymous SNV 0.940 4 23 hm5C_associated_SNPs_128219 0 0 1 0 2 TRAPPC11 chr4:184626132 3'AG 184626132 Downstream 57bp
chr4 184626188 184626188 1 + T A HNSC 184626186 + 184626166 184626206 41 ACTGTCATCACTCTGCCGCACGTGATTGTGGAGAATATCCC ACTGTCATCACTCTGCCGCACGAGATTGTGGAGAATATCCC < 41bp 0.5190913493641 0.722191418762806 0.15804183 0.34154522 prediction 0.406200138797413 Functional Gain - TRAPPC11 ENSG00000168538 CDS Human protein_coding chr4:184626186 chr4:184626188 nonsynonymous SNV 0.940 4 23 hm5C_associated_SNPs_128219 0 0 1 0 2 TRAPPC11 chr4:184626223 5'GT 184626223 Upstream 36bp
chr8 6338316 6338316 1 + C A LUAD 6338312 + 6338292 6338332 41 AGACGTCTGTGAGACCACGACTCACGTGCTTTCCGGGAAGC AGACGTCTGTGAGACCACGACTCAAGTGCTTTCCGGGAAGC < 41bp 0.293890152394795 0.703096305524192 0.110881776 0.22451612 prediction 0.406192611048383 Functional Gain - MCPH1 ENSG00000147316 CDS Human protein_coding chr8:6338312 chr8:6338316 nonsynonymous SNV 0.139 4 25 hm5C_associated_SNPs_128221 0 0 1 0 2 MCPH1 chr8:6338235 3'AG 6338235 Downstream 82bp
chr8 6338316 6338316 1 + C A LUAD 6338312 + 6338292 6338332 41 AGACGTCTGTGAGACCACGACTCACGTGCTTTCCGGGAAGC AGACGTCTGTGAGACCACGACTCAAGTGCTTTCCGGGAAGC < 41bp 0.293890152394795 0.703096305524192 0.110881776 0.22451612 prediction 0.406192611048383 Functional Gain - MCPH1 ENSG00000147316 CDS Human protein_coding chr8:6338312 chr8:6338316 nonsynonymous SNV 0.139 4 25 hm5C_associated_SNPs_128221 0 0 1 0 2 MCPH1 chr8:6338397 5'GT 6338397 Upstream 82bp
chr19 45852823 45852823 1 + C A HNSC 45852822 + 45852802 45852842 41 TCTATGAGGCACTGGGCGGGCCCCATGACCCCAACGTGGCC TCTATGAGGCACTGGGCGGGCACCATGACCCCAACGTGGCC < 41bp 0.440773932117835 0.7030935283515 0.2509848 0.35045272 prediction 0.406187056703 Functional Gain - KLC3 ENSG00000104892 CDS Human protein_coding chr19:45852822 chr19:45852823 nonsynonymous SNV 0.778 5 22 hm5C_associated_SNPs_128223 0 0 1 0 1 KLC3 chr19:45852860 5'GT 45852860 Upstream 38bp
chr19 19153587 19153587 1 + C A UCEC 19153586 + 19153566 19153606 41 ATGGTCTCCAAGCGCATTGCCCAGGAGACCTTTGATGCAGC ATGGTCTCCAAGCGCATTGCCAAGGAGACCTTTGATGCAGC < 41bp 0.438036404603059 0.703092320178615 0.538344 0.9321534 prediction 0.406184640357229 Functional Gain - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19153586 chr19:19153587 nonsynonymous SNV 0.751 5 22 hm5C_associated_SNPs_128224 0 0 1 0 2 ARMC6 chr19:19153520 3'AG 19153520 Downstream 68bp
chr19 19153587 19153587 1 + C A UCEC 19153586 + 19153566 19153606 41 ATGGTCTCCAAGCGCATTGCCCAGGAGACCTTTGATGCAGC ATGGTCTCCAAGCGCATTGCCAAGGAGACCTTTGATGCAGC < 41bp 0.438036404603059 0.703092320178615 0.538344 0.9321534 prediction 0.406184640357229 Functional Gain - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19153586 chr19:19153587 nonsynonymous SNV 0.751 5 22 hm5C_associated_SNPs_128224 0 0 1 0 2 ARMC6 chr19:19153686 5'GT 19153686 Upstream 100bp
chr7 156447377 156447377 1 + C T SKCM 156447376 + 156447356 156447396 41 GGGGACTCCGTGCAACCATGCCCCATCTGTAAAGAAGAATT GGGGACTCCGTGCAACCATGCTCCATCTGTAAAGAAGAATT < 41bp 0.418699956650883 0.703090309185764 0.13794893 0.63011813 prediction 0.406180618371529 Functional Gain - RNF32 ENSG00000105982 CDS Human protein_coding chr7:156447376 chr7:156447377 nonsynonymous SNV 0.703 1 22 hm5C_associated_SNPs_128227 0 0 0 0 1 RNF32 chr7:156447412 5'GT 156447412 Upstream 36bp
chr16 24909414 24909414 1 + C G ACC 24909411 + 24909391 24909431 41 ATGGTGTTCCCTGGGATGGTCAGCCGCATCCTCTTCCCAGG ATGGTGTTCCCTGGGATGGTCAGGCGCATCCTCTTCCCAGG < 41bp 0.5076432161651 0.710733397790214 0.4566356 0.91912127 prediction 0.406180363250229 Functional Gain - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24909411 chr16:24909414 nonsynonymous SNV 0.672 5 24 hm5C_associated_SNPs_128228 0 0 0 0 1 SLC5A11 chr16:24909430 5'GT 24909430 Upstream 17bp
chr2 79254169 79254169 1 + C T LUSC 79254168 + 79254148 79254188 41 TCCCCCTCAAAGCTGGCTTGCCAGAAGCGGCCCTCTGGAAA TCCCCCTCAAAGCTGGCTTGCTAGAAGCGGCCCTCTGGAAA < 41bp 0.62137764048034 0.824460792353644 0.7244524 0.2979654 prediction 0.406166303746607 Functional Gain - REG3G ENSG00000143954 CDS Human protein_coding chr2:79254168 chr2:79254169 stopgain 0.766 0 22 hm5C_associated_SNPs_128230 0 0 0 0 1 REG3G chr2:79254160 3'AG 79254160 Downstream 10bp
chr14 103598087 103598087 1 + T C ESCA 103598085 + 103598065 103598105 41 ACACCCTGCTCCAGAACCTGCATGAGGACCTGAAGGTAGCG ACACCCTGCTCCAGAACCTGCACGAGGACCTGAAGGTAGCG < 41bp 0.427241495381704 0.70308212756356 0.13784388 0.17635372 prediction 0.406164255127121 Functional Gain - TNFAIP2 ENSG00000185215 CDS Human protein_coding chr14:103598085 chr14:103598087 synonymous SNV . 0 23 hm5C_associated_SNPs_128232 0 0 0 0 1 TNFAIP2 chr14:103598099 5'GT 103598099 Upstream 13bp
chr11 85367380 85367380 1 + A G LIHC 85367377 + 85367357 85367397 41 CAATCAGCTCTGTTACCACACAAAGGGAACATCTTAAGTTA CAATCAGCTCTGTTACCACACAAGGGGAACATCTTAAGTTA < 41bp 0.587564247327244 0.790641965715109 0.343714 0.86937 prediction 0.406155436775731 Functional Gain - TMEM126A ENSG00000171202 CDS Human protein_coding chr11:85367377 chr11:85367380 synonymous SNV . 0 24 hm5C_associated_SNPs_128233 0 0 0 0 1 TMEM126A chr11:85367353 3'AG 85367353 Downstream 28bp
chr2 219221628 219221628 1 + C T UCEC 219221627 + 219221607 219221647 41 CATGTCCTCCAAGGTTTACTCCACAGGTGGGAAGAGGACTG CATGTCCTCCAAGGTTTACTCTACAGGTGGGAAGAGGACTG < 41bp 0.574654282772117 0.77772392894367 0.06640518 0.22481415 prediction 0.406139292343105 Functional Gain - CATIP ENSG00000158428 CDS Human protein_coding chr2:219221627 chr2:219221628 synonymous SNV . 0 22 hm5C_associated_SNPs_128237 0 0 0 0 1 CATIP chr2:219221632 5'GT 219221632 Upstream 5bp
chr16 81730227 81730227 1 + C T UCEC 81730226 + 81730206 81730246 41 CTGGTTCCAGCTCTACAGCCCCGGAGGGGTGGCCTGCGACG CTGGTTCCAGCTCTACAGCCCTGGAGGGGTGGCCTGCGACG < 41bp 0.63811974653417 0.84118734504269 0.8900478 0.5533872 prediction 0.406135197017038 Functional Gain - CMIP ENSG00000153815 CDS Human protein_coding chr16:81730226 chr16:81730227 synonymous SNV . 0 22 hm5C_associated_SNPs_128238 0 0 1 0 2 CMIP chr16:81730165 3'AG 81730165 Downstream 63bp
chr16 81730227 81730227 1 + C T UCEC 81730226 + 81730206 81730246 41 CTGGTTCCAGCTCTACAGCCCCGGAGGGGTGGCCTGCGACG CTGGTTCCAGCTCTACAGCCCTGGAGGGGTGGCCTGCGACG < 41bp 0.63811974653417 0.84118734504269 0.8900478 0.5533872 prediction 0.406135197017038 Functional Gain - CMIP ENSG00000153815 CDS Human protein_coding chr16:81730226 chr16:81730227 synonymous SNV . 0 22 hm5C_associated_SNPs_128238 0 0 1 0 2 CMIP chr16:81730272 5'GT 81730272 Upstream 46bp
chr17 16342687 16342687 1 + T A rs35752829 16342683 + 16342663 16342703 41 AGTCTGCGAAGGCCGGGACCCGGTTCCCCGGCCCACAGTGG AGTCTGCGAAGGCCGGGACCCGGTACCCCGGCCCACAGTGG < 41bp 0.627371449498957 0.830437680304809 0.3891878 0.5724303 prediction 0.406132461611705 Functional Gain - LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342683 chr17:16342687 . . 0 25 hm5C_associated_SNPs_128239 0 0 1 0 3 LRRC75A-AS1 chr17:16342641 3'AG 16342641 Downstream 47bp
chr17 16342687 16342687 1 + T A rs35752829 16342683 + 16342663 16342703 41 AGTCTGCGAAGGCCGGGACCCGGTTCCCCGGCCCACAGTGG AGTCTGCGAAGGCCGGGACCCGGTACCCCGGCCCACAGTGG < 41bp 0.627371449498957 0.830437680304809 0.3891878 0.5724303 prediction 0.406132461611705 Functional Gain - LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342683 chr17:16342687 . . 0 25 hm5C_associated_SNPs_128239 0 0 1 0 3 LRRC75A-AS1 chr17:16342707 5'GT 16342707 Upstream 21bp
chr17 16342687 16342687 1 + T A rs35752829 16342683 + 16342663 16342703 41 AGTCTGCGAAGGCCGGGACCCGGTTCCCCGGCCCACAGTGG AGTCTGCGAAGGCCGGGACCCGGTACCCCGGCCCACAGTGG < 41bp 0.627371449498957 0.830437680304809 0.3891878 0.5724303 prediction 0.406132461611705 Functional Gain - LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342683 chr17:16342687 . . 0 25 hm5C_associated_SNPs_128239 0 0 1 0 3 LRRC75A-AS1 chr17:16342728 5'GT 16342728 Upstream 42bp
chr17 27009776 27009776 1 + C G rs146677116 27009772 + 27009752 27009792 41 GGCCAAAAAGTTTGGGCTTACTCCCGAGCAGTTTGGGGAGA GGCCAAAAAGTTTGGGCTTACTCCGGAGCAGTTTGGGGAGA < 41bp 0.414138214967953 0.703065400090735 0.2618374 0.8726546 prediction 0.40613080018147 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27009772 chr17:27009776 synonymous SNV . 0 25 hm5C_associated_SNPs_128241 0 0 1 0 2 SUPT6H chr17:27009745 3'AG 27009745 Downstream 32bp
chr17 27009776 27009776 1 + C G rs146677116 27009772 + 27009752 27009792 41 GGCCAAAAAGTTTGGGCTTACTCCCGAGCAGTTTGGGGAGA GGCCAAAAAGTTTGGGCTTACTCCGGAGCAGTTTGGGGAGA < 41bp 0.414138214967953 0.703065400090735 0.2618374 0.8726546 prediction 0.40613080018147 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27009772 chr17:27009776 synonymous SNV . 0 25 hm5C_associated_SNPs_128241 0 0 1 0 2 SUPT6H chr17:27009874 5'GT 27009874 Upstream 99bp
chr11 34162078 34162078 1 + C G LUAD 34162077 + 34162057 34162097 41 GCCATCTCTCGCATCTATTTCCTGAACCAGCTGGGGGACCT GCCATCTCTCGCATCTATTTCGTGAACCAGCTGGGGGACCT < 41bp 0.379608910740909 0.703063003511238 0.16582787 0.41306657 prediction 0.406126007022476 Functional Gain - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34162077 chr11:34162078 nonsynonymous SNV 0.778 1 22 hm5C_associated_SNPs_128243 0 0 1 0 1 NAT10 chr11:34162119 5'GT 34162119 Upstream 42bp
chr17 18634464 18634464 1 + C T UCEC 18634463 + 18634443 18634483 41 AAGGATAAACTCTCGGGCATCCGCAAAGTTATCACGGAATC AAGGATAAACTCTCGGGCATCTGCAAAGTTATCACGGAATC < 41bp 0.427256369739975 0.703061339260873 0.12378588 0.30797392 prediction 0.406122678521746 Functional Gain - TRIM16L ENSG00000108448 CDS Human protein_coding chr17:18634463 chr17:18634464 nonsynonymous SNV 0.980 1 22 hm5C_associated_SNPs_128245 0 0 0 0 2 TRIM16L chr17:18634383 3'AG 18634383 Downstream 82bp
chr17 18634464 18634464 1 + C T UCEC 18634463 + 18634443 18634483 41 AAGGATAAACTCTCGGGCATCCGCAAAGTTATCACGGAATC AAGGATAAACTCTCGGGCATCTGCAAAGTTATCACGGAATC < 41bp 0.427256369739975 0.703061339260873 0.12378588 0.30797392 prediction 0.406122678521746 Functional Gain - TRIM16L ENSG00000108448 CDS Human protein_coding chr17:18634463 chr17:18634464 nonsynonymous SNV 0.980 1 22 hm5C_associated_SNPs_128245 0 0 0 0 2 TRIM16L chr17:18634548 5'GT 18634548 Upstream 85bp
chr1 235596396 235596396 1 + C G rs370122779 235596392 + 235596372 235596412 41 AGTGCCAAGGACCACACATCCATGCGGATGAACGTGGCCAA AGTGCCAAGGACCACACATCCATGGGGATGAACGTGGCCAA < 41bp 0.671642276855879 0.874703025982424 0.40557733 0.5935556 prediction 0.40612149825309 Functional Gain - TBCE ENSG00000116957 CDS Human processed_pseudogene chr1:235596392 chr1:235596396 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_128247 0 0 1 0 1 TBCE chr1:235596486 5'GT 235596486 Upstream 91bp
chr3 9412772 9412772 1 + T C LGG 9412770 + 9412750 9412790 41 GTTCTAAAGGATTTTGAAGACTTGGCTGGAAAACTCCCATG GTTCTAAAGGATTTTGAAGACTCGGCTGGAAAACTCCCATG < 41bp 0.653029920520698 0.856086626086512 0.04452789 0.06719655 prediction 0.406113411131629 Functional Gain - THUMPD3 ENSG00000134077 CDS Human protein_coding chr3:9412770 chr3:9412772 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_128250 0 0 1 0 1 THUMPD3 chr3:9412744 3'AG 9412744 Downstream 29bp
chr10 121196257 121196257 1 + T C LAML 121196255 + 121196235 121196275 41 CTGAAGTTCCACATCTACAACATGGGCAACCCTGGCTTCGA CTGAAGTTCCACATCTACAACACGGGCAACCCTGGCTTCGA < 41bp 0.416841500981915 0.70305121877191 0.72222227 0.76563466 prediction 0.406102437543821 Functional Gain - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121196255 chr10:121196257 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_128251 0 0 0 0 1 GRK5 chr10:121196163 3'AG 121196163 Downstream 95bp
chr5 161576172 161576172 1 + C A SKCM 161576171 + 161576151 161576191 41 CATTGCCCGGAAATCGCTCCCCAAGGTCTCCTATGTCACAG CATTGCCCGGAAATCGCTCCCAAAGGTCTCCTATGTCACAG < 41bp 0.432705940630457 0.703050813457328 0.326053 0.3701052 prediction 0.406101626914656 Functional Gain - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161576171 chr5:161576172 synonymous SNV . 0 22 hm5C_associated_SNPs_128252 0 0 0 0 1 GABRG2 chr5:161576114 3'AG 161576114 Downstream 59bp
chr19 19166111 19166111 1 + T C STAD 19166109 + 19166089 19166129 41 GTGCTGAGCACCCTGCGAGCCATCGCAGGCAACGACGACGT GTGCTGAGCACCCTGCGAGCCACCGCAGGCAACGACGACGT < 41bp 0.423867778964655 0.703050028392244 0.34954405 0.18497536 prediction 0.406100056784489 Functional Gain - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19166109 chr19:19166111 nonsynonymous SNV 0.157 4 23 hm5C_associated_SNPs_128253 0 0 0 0 2 ARMC6 chr19:19166074 3'AG 19166074 Downstream 38bp
chr19 19166111 19166111 1 + T C STAD 19166109 + 19166089 19166129 41 GTGCTGAGCACCCTGCGAGCCATCGCAGGCAACGACGACGT GTGCTGAGCACCCTGCGAGCCACCGCAGGCAACGACGACGT < 41bp 0.423867778964655 0.703050028392244 0.34954405 0.18497536 prediction 0.406100056784489 Functional Gain - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19166109 chr19:19166111 nonsynonymous SNV 0.157 4 23 hm5C_associated_SNPs_128253 0 0 0 0 2 ARMC6 chr19:19166205 5'GT 19166205 Upstream 95bp
chr15 25477422 25477422 1 + C T LUSC 25477421 + 25477401 25477441 41 TGTCAGCCAGGTTCCCAGCCCCCGATGCGCTGAAGCTCAAG TGTCAGCCAGGTTCCCAGCCCTCGATGCGCTGAAGCTCAAG < 41bp 0.515580523120409 0.71862994651757 0.066939086 0.8839035 prediction 0.406098846794323 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25477421 chr15:25477422 . . 0 22 hm5C_associated_SNPs_128254 0 0 0 0 2 SNHG14 chr15:25477347 3'AG 25477347 Downstream 76bp
chr15 25477422 25477422 1 + C T LUSC 25477421 + 25477401 25477441 41 TGTCAGCCAGGTTCCCAGCCCCCGATGCGCTGAAGCTCAAG TGTCAGCCAGGTTCCCAGCCCTCGATGCGCTGAAGCTCAAG < 41bp 0.515580523120409 0.71862994651757 0.066939086 0.8839035 prediction 0.406098846794323 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25477421 chr15:25477422 . . 0 22 hm5C_associated_SNPs_128254 0 0 0 0 2 SNHG14 chr15:25477478 5'GT 25477478 Upstream 57bp
chr18 10487611 10487611 1 + T A LIHC 10487609 + 10487589 10487629 41 AATCACATGAAGGTCACCCCCATGGATGCGGCCACAGCCTC AATCACATGAAGGTCACCCCCAAGGATGCGGCCACAGCCTC < 41bp 0.537580622908066 0.740622724141913 0.18226981 0.3649094 prediction 0.406084202467694 Functional Gain - APCDD1 ENSG00000154856 CDS Human protein_coding chr18:10487609 chr18:10487611 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_128257 0 0 0 0 1 APCDD1 chr18:10487587 3'AG 10487587 Downstream 25bp
chr7 76126704 76126704 1 + C T BRCA 76126703 + 76126683 76126723 41 GGACTCCCTGTGTGTCTTAGCCGCGCACCCCAGCCCACCAG GGACTCCCTGTGTGTCTTAGCTGCGCACCCCAGCCCACCAG < 41bp 0.610199160219209 0.813237127467377 0.8224836 0.16678321 prediction 0.406075934496337 Functional Gain - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76126703 chr7:76126704 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_128260 0 0 0 0 1 DTX2 chr7:76126794 5'GT 76126794 Upstream 91bp
chr21 39528455 39528455 1 + A G rs2836172 39528452 + 39528432 39528472 41 TGAAGCTGTTCATGCCAAGACCGAAAGTGCTGGCCCAGTAT TGAAGCTGTTCATGCCAAGACCGGAAGTGCTGGCCCAGTAT < 41bp 0.618047430677708 0.821082767166684 0.09001443 0.26517206 prediction 0.406070672977952 Functional Gain - DSCR8 ENSG00000198054 CDS Human protein_coding chr21:39528452 chr21:39528455 nonsynonymous SNV 0.007 1 24 hm5C_associated_SNPs_128262 0 0 1 0 1 DSCR8 chr21:39528398 3'AG 39528398 Downstream 58bp
chr15 39882160 39882160 1 + A G COAD 39882157 + 39882137 39882177 41 CATCATCTGCGGGGAGGACACAGACCTGGATGGCTGGCCCA CATCATCTGCGGGGAGGACACAGGCCTGGATGGCTGGCCCA < 41bp 0.630125924513514 0.833153432349235 0.5971968 0.88500386 prediction 0.40605501567144 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39882157 chr15:39882160 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_128265 0 0 1 0 1 THBS1 chr15:39882224 5'GT 39882224 Upstream 65bp
chr16 30198151 30198151 1 + A G rs1132812 30198148 + 30198128 30198168 41 CCTCTGCAGGTGTGGGAGATCCCAGATGGGGGCCTGATGCT CCTCTGCAGGTGTGGGAGATCCCGGATGGGGGCCTGATGCT < 41bp 0.460173172859174 0.703021861143568 0.7623924 0.9033221 prediction 0.406043722287137 Functional Gain - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30198148 chr16:30198151 synonymous SNV . 0 24 hm5C_associated_SNPs_128266 1 0 0 0 1 CORO1A chr16:30198137 3'AG 30198137 Downstream 15bp
chr21 43531008 43531008 1 + T A rs220126 43531006 + 43530986 43531026 41 GCAGGTGACCTGGTGAGCCCCATGGGCGGTGGACTGTCTGC GCAGGTGACCTGGTGAGCCCCAAGGGCGGTGGACTGTCTGC < 41bp 0.497789469865951 0.703020790940834 0.64835346 0.8387821 prediction 0.406041581881669 Functional Gain - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43531006 chr21:43531008 nonsynonymous SNV 0.161 1 23 hm5C_associated_SNPs_128267 0 0 0 0 1 UMODL1 chr21:43530990 3'AG 43530990 Downstream 19bp
chrX 47106753 47106753 1 + C T SKCM 47106752 + 47106732 47106772 41 AGCCACAGAATGAGTCGAATCCGGAGCTGTACAAATATGAC AGCCACAGAATGAGTCGAATCTGGAGCTGTACAAATATGAC < 41bp 0.636546415863908 0.839566966951972 0.8411199 0.16888145 prediction 0.406041102176127 Functional Gain - USP11 ENSG00000102226 CDS Human protein_coding chrX:47106752 chrX:47106753 nonsynonymous SNV 0.210 1 22 hm5C_associated_SNPs_128268 0 0 1 0 2 USP11 chrX:47106703 3'AG 47106703 Downstream 51bp
chrX 47106753 47106753 1 + C T SKCM 47106752 + 47106732 47106772 41 AGCCACAGAATGAGTCGAATCCGGAGCTGTACAAATATGAC AGCCACAGAATGAGTCGAATCTGGAGCTGTACAAATATGAC < 41bp 0.636546415863908 0.839566966951972 0.8411199 0.16888145 prediction 0.406041102176127 Functional Gain - USP11 ENSG00000102226 CDS Human protein_coding chrX:47106752 chrX:47106753 nonsynonymous SNV 0.210 1 22 hm5C_associated_SNPs_128268 0 0 1 0 2 USP11 chrX:47106818 5'GT 47106818 Upstream 66bp
chr21 47419602 47419602 1 + C T SKCM 47419601 + 47419581 47419621 41 GACACCAAGGACCGCCTGGGCCGGACGTAAGTGGGGCTCTG GACACCAAGGACCGCCTGGGCTGGACGTAAGTGGGGCTCTG < 41bp 0.608769649408864 0.811776163735941 0.64807355 0.38252676 prediction 0.406013028654154 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47419601 chr21:47419602 nonsynonymous SNV 0.278 1 22 hm5C_associated_SNPs_128273 0 0 0 0 2 COL6A1 chr21:47419571 3'AG 47419571 Downstream 32bp
chr21 47419602 47419602 1 + C T SKCM 47419601 + 47419581 47419621 41 GACACCAAGGACCGCCTGGGCCGGACGTAAGTGGGGCTCTG GACACCAAGGACCGCCTGGGCTGGACGTAAGTGGGGCTCTG < 41bp 0.608769649408864 0.811776163735941 0.64807355 0.38252676 prediction 0.406013028654154 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47419601 chr21:47419602 nonsynonymous SNV 0.278 1 22 hm5C_associated_SNPs_128273 0 0 0 0 2 COL6A1 chr21:47419606 5'GT 47419606 Upstream 5bp
chr22 19504124 19504124 1 + C T COAD 19504123 + 19504103 19504143 41 CATGGAGCATGGCACAGTGACCGTGGTGGGCATCCCCCCAG CATGGAGCATGGCACAGTGACTGTGGTGGGCATCCCCCCAG < 41bp 0.62642393915183 0.829429181639153 0.21148026 0.31399542 prediction 0.406010484974645 Functional Gain - CDC45 ENSG00000093009 CDS Human protein_coding chr22:19504123 chr22:19504124 synonymous SNV . 0 22 hm5C_associated_SNPs_128274 0 0 1 0 2 CDC45 chr22:19504050 3'AG 19504050 Downstream 75bp
chr22 19504124 19504124 1 + C T COAD 19504123 + 19504103 19504143 41 CATGGAGCATGGCACAGTGACCGTGGTGGGCATCCCCCCAG CATGGAGCATGGCACAGTGACTGTGGTGGGCATCCCCCCAG < 41bp 0.62642393915183 0.829429181639153 0.21148026 0.31399542 prediction 0.406010484974645 Functional Gain - CDC45 ENSG00000093009 CDS Human protein_coding chr22:19504123 chr22:19504124 synonymous SNV . 0 22 hm5C_associated_SNPs_128274 0 0 1 0 2 CDC45 chr22:19504168 5'GT 19504168 Upstream 45bp
chr1 147380141 147380141 1 + T C HNSC 147380139 + 147380119 147380159 41 GAGGTGAATGAGCACTCCACCGTCATCGGCAGAGTCTGGCT GAGGTGAATGAGCACTCCACCGCCATCGGCAGAGTCTGGCT < 41bp 0.648525084718896 0.851526554274335 0.08959377 0.46144414 prediction 0.406002939110878 Functional Gain - GJA8 ENSG00000121634 CDS Human protein_coding chr1:147380139 chr1:147380141 nonsynonymous SNV 0.965 3 23 hm5C_associated_SNPs_128276 0 0 0 0 1 GJA8 chr1:147380072 3'AG 147380072 Downstream 70bp
chr17 12799783 12799783 1 + C T UCEC 12799782 + 12799762 12799802 41 CAGCACGCACAAGAAGCTCACCGCATGTCTGCAGGGCCAGC CAGCACGCACAAGAAGCTCACTGCATGTCTGCAGGGCCAGC < 41bp 0.428988859767322 0.702999654417063 0.20346871 0.38371053 prediction 0.405999308834127 Functional Gain - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12799782 chr17:12799783 synonymous SNV . 0 22 hm5C_associated_SNPs_128277 0 0 0 0 2 ARHGAP44 chr17:12799724 3'AG 12799724 Downstream 60bp
chr17 12799783 12799783 1 + C T UCEC 12799782 + 12799762 12799802 41 CAGCACGCACAAGAAGCTCACCGCATGTCTGCAGGGCCAGC CAGCACGCACAAGAAGCTCACTGCATGTCTGCAGGGCCAGC < 41bp 0.428988859767322 0.702999654417063 0.20346871 0.38371053 prediction 0.405999308834127 Functional Gain - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12799782 chr17:12799783 synonymous SNV . 0 22 hm5C_associated_SNPs_128277 0 0 0 0 2 ARHGAP44 chr17:12799828 5'GT 12799828 Upstream 46bp
chr17 42427876 42427876 1 + C T CESC 42427875 + 42427855 42427895 41 TTCTGCGACCTGGTTCACACCCGCTGCATCACACCCACGGG TTCTGCGACCTGGTTCACACCTGCTGCATCACACCCACGGG < 41bp 0.45384428972347 0.702998646944561 0.19265723 0.19660485 prediction 0.405997293889123 Functional Gain - GRN ENSG00000030582 CDS Human protein_coding chr17:42427875 chr17:42427876 nonsynonymous SNV 0.040 3 22 hm5C_associated_SNPs_128278 0 0 1 0 2 GRN chr17:42427810 3'AG 42427810 Downstream 67bp
chr17 42427876 42427876 1 + C T CESC 42427875 + 42427855 42427895 41 TTCTGCGACCTGGTTCACACCCGCTGCATCACACCCACGGG TTCTGCGACCTGGTTCACACCTGCTGCATCACACCCACGGG < 41bp 0.45384428972347 0.702998646944561 0.19265723 0.19660485 prediction 0.405997293889123 Functional Gain - GRN ENSG00000030582 CDS Human protein_coding chr17:42427875 chr17:42427876 nonsynonymous SNV 0.040 3 22 hm5C_associated_SNPs_128278 0 0 1 0 2 GRN chr17:42427945 5'GT 42427945 Upstream 70bp
chr1 21890642 21890642 1 + C T UCEC 21890641 + 21890621 21890661 41 ACTCAGACAACGAGATGCCCCCTGAGGCCTTGAGCCAGGGC ACTCAGACAACGAGATGCCCCTTGAGGCCTTGAGCCAGGGC < 41bp 0.441255425033549 0.702993205200117 0.06380007 0.07441378 prediction 0.405986410400234 Functional Gain - ALPL ENSG00000162551 CDS Human protein_coding chr1:21890641 chr1:21890642 nonsynonymous SNV 0.945 1 22 hm5C_associated_SNPs_128280 0 0 1 0 1 ALPL chr1:21890709 5'GT 21890709 Upstream 68bp
chr6 112389478 112389478 1 + C A CESC 112389477 + 112389457 112389497 41 AACAAAATGGACTCCCTGCTCCAGAACATGTGGGATGGGAA AACAAAATGGACTCCCTGCTCAAGAACATGTGGGATGGGAA < 41bp 0.439357019059788 0.702989196974552 0.32614118 0.3131696 prediction 0.405978393949105 Functional Gain - WISP3 ENSG00000112761 CDS Human protein_coding chr6:112389477 chr6:112389478 synonymous SNV 0.998 0 22 hm5C_associated_SNPs_128283 0 0 0 0 1 WISP3 chr6:112389408 3'AG 112389408 Downstream 71bp
chr19 50204810 50204810 1 + C A HNSC 50204806 + 50204786 50204826 41 CGAGGACTTCGACTGGACCGCGGTCCTGGCGCAGGAATTCC CGAGGACTTCGACTGGACCGCGGTACTGGCGCAGGAATTCC < 41bp 0.293716016139029 0.702985320386421 0.3908627 0.51914275 prediction 0.405970640772842 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50204806 chr19:50204810 synonymous SNV . 0 25 hm5C_associated_SNPs_128285 0 0 0 0 2 CPT1C chr19:50204754 3'AG 50204754 Downstream 57bp
chr19 50204810 50204810 1 + C A HNSC 50204806 + 50204786 50204826 41 CGAGGACTTCGACTGGACCGCGGTCCTGGCGCAGGAATTCC CGAGGACTTCGACTGGACCGCGGTACTGGCGCAGGAATTCC < 41bp 0.293716016139029 0.702985320386421 0.3908627 0.51914275 prediction 0.405970640772842 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50204806 chr19:50204810 synonymous SNV . 0 25 hm5C_associated_SNPs_128285 0 0 0 0 2 CPT1C chr19:50204891 5'GT 50204891 Upstream 82bp
chr1 111991845 111991845 1 + C A rs1270853 111991844 + 111991824 111991864 41 CTGGACGCCGGCCGGAGACTCCGCTCCGGCAGCAAACCCCA CTGGACGCCGGCCGGAGACTCAGCTCCGGCAGCAAACCCCA < 41bp 0.616965236832247 0.81994480622979 0.19212273 0.57210904 prediction 0.405959138795087 Functional Gain - ATP5F1;WDR77 ENSG00000116455;ENSG00000116459 UTR5 Human other chr1:111991844 chr1:111991845 . . 0 22 hm5C_associated_SNPs_128288 0 0 0 0 1 ATP5F1;WDR77 chr1:111991817 3'AG 111991817 Downstream 29bp
chr20 42574671 42574671 1 + C T UCEC 42574670 + 42574650 42574690 41 GGTGCATTGCAGGTGTGTTTCCGCAGAAGGTAAGCAGCGGG GGTGCATTGCAGGTGTGTTTCTGCAGAAGGTAAGCAGCGGG < 41bp 0.577310283249834 0.780289598062479 0.5382256 0.4426384 prediction 0.40595862962529 Functional Gain - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42574670 chr20:42574671 nonsynonymous SNV 0.975 0 22 hm5C_associated_SNPs_128289 0 0 0 0 1 TOX2 chr20:42574678 5'GT 42574678 Upstream 8bp
chr11 33094196 33094196 1 + C A OV 33094195 + 33094175 33094215 41 TGTCCCTACTACGATGCAATCCTGAGTAAGATCCTCGTCCG TGTCCCTACTACGATGCAATCATGAGTAAGATCCTCGTCCG < 41bp 0.644329900777124 0.847303872780512 0.19521964 0.5784949 prediction 0.405947944006777 Functional Gain - TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33094195 chr11:33094196 nonsynonymous SNV 0.249 4 22 hm5C_associated_SNPs_128293 0 0 1 0 1 TCP11L1 chr11:33094199 5'GT 33094199 Upstream 4bp
chr4 71114720 71114720 1 + T A KIRP 71114718 + 71114698 71114738 41 ATTTATTTTTTTTGCAGTGCCATGAGAATGATGAAAGACCA ATTTATTTTTTTTGCAGTGCCAAGAGAATGATGAAAGACCA < 41bp 0.497770852672198 0.702972537654831 0.15644339 0.12164682 prediction 0.405945075309661 Functional Gain - CSN3 ENSG00000171209 CDS Human protein_coding chr4:71114718 chr4:71114720 nonsynonymous SNV 0.011 0 23 hm5C_associated_SNPs_128294 0 0 0 0 1 CSN3 chr4:71114715 3'AG 71114715 Downstream 6bp
chr5 180419834 180419834 1 + C A LUSC 180419833 + 180419813 180419853 41 GACAGTGGCAAGTCACTGGACCGGGCAAGTTTGTCCAGGCC GACAGTGGCAAGTCACTGGACAGGGCAAGTTTGTCCAGGCC < 41bp 0.642352055538512 0.845320679029274 0.26400828 0.62621397 prediction 0.405937246981526 Functional Gain - BTNL3 ENSG00000168903 CDS Human protein_coding chr5:180419833 chr5:180419834 nonsynonymous SNV 0.001 3 22 hm5C_associated_SNPs_128295 0 0 0 0 1 BTNL3 chr5:180419813 3'AG 180419813 Downstream 22bp
chr1 47610345 47610345 1 + C A UCEC 47610344 + 47610324 47610364 41 CTCTATGCTCTGGCCACACACCCCAAGCATCAGGAGAGGTG CTCTATGCTCTGGCCACACACACCAAGCATCAGGAGAGGTG < 41bp 0.639016267165481 0.841983062696167 0.019184828 0.021813065 prediction 0.405933591061372 Functional Gain - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47610344 chr1:47610345 nonsynonymous SNV 0.011 5 22 hm5C_associated_SNPs_128296 0 0 0 0 1 CYP4A22 chr1:47610412 5'GT 47610412 Upstream 68bp
chr22 25598707 25598707 1 + C A HNSC 25598703 + 25598683 25598723 41 GAGCTCTCGGCCGAGTGCCCCAGCCTGACCGACAGCCTGCT GAGCTCTCGGCCGAGTGCCCCAGCATGACCGACAGCCTGCT < 41bp 0.276531788537009 0.70296596001739 0.836922 0.8305889 prediction 0.40593192003478 Functional Gain - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25598703 chr22:25598707 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_128298 0 0 0 0 2 CRYBB3 chr22:25598641 3'AG 25598641 Downstream 67bp
chr22 25598707 25598707 1 + C A HNSC 25598703 + 25598683 25598723 41 GAGCTCTCGGCCGAGTGCCCCAGCCTGACCGACAGCCTGCT GAGCTCTCGGCCGAGTGCCCCAGCATGACCGACAGCCTGCT < 41bp 0.276531788537009 0.70296596001739 0.836922 0.8305889 prediction 0.40593192003478 Functional Gain - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25598703 chr22:25598707 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_128298 0 0 0 0 2 CRYBB3 chr22:25598759 5'GT 25598759 Upstream 53bp
chr19 14040401 14040401 1 + T C HNSC 14040398 + 14040378 14040418 41 TGCCCCCAGAAGTGGCCCAGCAGTACCAGGACATCATGCAA TGCCCCCAGAAGTGGCCCAGCAGCACCAGGACATCATGCAA < 41bp 0.522856728368592 0.725820289782669 0.09085974 0.15680337 prediction 0.405927122828154 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14040398 chr19:14040401 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_128299 0 0 0 0 2 CC2D1A chr19:14040347 3'AG 14040347 Downstream 55bp
chr19 14040401 14040401 1 + T C HNSC 14040398 + 14040378 14040418 41 TGCCCCCAGAAGTGGCCCAGCAGTACCAGGACATCATGCAA TGCCCCCAGAAGTGGCCCAGCAGCACCAGGACATCATGCAA < 41bp 0.522856728368592 0.725820289782669 0.09085974 0.15680337 prediction 0.405927122828154 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14040398 chr19:14040401 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_128299 0 0 0 0 2 CC2D1A chr19:14040473 5'GT 14040473 Upstream 73bp
chr14 103566856 103566856 1 + C T SKCM 103566855 + 103566835 103566875 41 CGGCCCAGCTACCGGCCATTCCCAGGCCACTCCTGAGGTGC CGGCCCAGCTACCGGCCATTCTCAGGCCACTCCTGAGGTGC < 41bp 0.477866608727887 0.702952082570307 0.34421843 0.25415975 prediction 0.405904165140615 Functional Gain - EXOC3L4 ENSG00000205436 CDS Human protein_coding chr14:103566855 chr14:103566856 synonymous SNV . 0 22 hm5C_associated_SNPs_128302 0 0 0 0 1 EXOC3L4 chr14:103566950 5'GT 103566950 Upstream 95bp
chr4 107237681 107237681 1 + T C rs114327761 107237678 + 107237658 107237698 41 CATTGGGTCCTTTCTCACTGCTATAGTACGCGGGTGGCTGG CATTGGGTCCTTTCTCACTGCTACAGTACGCGGGTGGCTGG < 41bp 0.483665102642221 0.702949407082203 0.1501289 0.16522482 prediction 0.405898814164406 Functional Gain - AIMP1 ENSG00000164022 UTR5 Human protein_coding chr4:107237678 chr4:107237681 . . 0 24 hm5C_associated_SNPs_128303 0 0 0 0 1 AIMP1 chr4:107237751 5'GT 107237751 Upstream 71bp
chr19 1085663 1085663 1 + C A UCEC 1085662 + 1085642 1085682 41 CTGTCTCCCTTTCTTAGAATCCCGAGTTGTGTCCAACGATT CTGTCTCCCTTTCTTAGAATCACGAGTTGTGTCCAACGATT < 41bp 0.446165768324212 0.702945908387749 0.038202047 0.08918145 prediction 0.405891816775498 Functional Gain - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1085662 chr19:1085663 synonymous SNV . 0 22 hm5C_associated_SNPs_128305 0 0 0 0 1 ARHGAP45 chr19:1085659 3'AG 1085659 Downstream 5bp
chr1 206320280 206320280 1 + C T LIHC 206320279 + 206320259 206320299 41 TTTCTCCATTCAGTATGGAACCGGGAGCTTGTCCGGGATCA TTTCTCCATTCAGTATGGAACTGGGAGCTTGTCCGGGATCA < 41bp 0.610845867359718 0.813790176872092 0.8398683 0.63062996 prediction 0.405888619024747 Functional Gain - CTSE ENSG00000196188 CDS Human protein_coding chr1:206320279 chr1:206320280 synonymous SNV . 0 22 hm5C_associated_SNPs_128306 0 0 0 0 2 CTSE chr1:206320201 3'AG 206320201 Downstream 80bp
chr1 206320280 206320280 1 + C T LIHC 206320279 + 206320259 206320299 41 TTTCTCCATTCAGTATGGAACCGGGAGCTTGTCCGGGATCA TTTCTCCATTCAGTATGGAACTGGGAGCTTGTCCGGGATCA < 41bp 0.610845867359718 0.813790176872092 0.8398683 0.63062996 prediction 0.405888619024747 Functional Gain - CTSE ENSG00000196188 CDS Human protein_coding chr1:206320279 chr1:206320280 synonymous SNV . 0 22 hm5C_associated_SNPs_128306 0 0 0 0 2 CTSE chr1:206320319 5'GT 206320319 Upstream 40bp
chr12 72366363 72366363 1 + C T LUSC 72366362 + 72366342 72366382 41 AAAACTTGGGGTGTTGTATTCCGGGAGCTCTCCAAACTCTA AAAACTTGGGGTGTTGTATTCTGGGAGCTCTCCAAACTCTA < 41bp 0.620524374338 0.823463976059761 0.96157837 0.9521618 prediction 0.405879203443521 Functional Gain - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72366362 chr12:72366363 nonsynonymous SNV 0.995 5 22 hm5C_associated_SNPs_128308 0 0 0 0 1 TPH2 chr12:72366299 3'AG 72366299 Downstream 65bp
chr1 28271882 28271882 1 + C G UCEC 28271878 + 28271858 28271898 41 GGGTGACTACCTCTGTGATTCTCCCTGGGCCCTCATCAACT GGGTGACTACCTCTGTGATTCTCCGTGGGCCCTCATCAACT < 41bp 0.416671725718826 0.702933058606265 0.27214727 0.82427675 prediction 0.40586611721253 Functional Gain - SMPDL3B ENSG00000130768 CDS Human protein_coding chr1:28271878 chr1:28271882 synonymous SNV . 0 25 hm5C_associated_SNPs_128311 0 0 0 0 1 SMPDL3B chr1:28271956 5'GT 28271956 Upstream 75bp
chr3 136729035 136729035 1 + T C SKCM 136729033 + 136729013 136729053 41 GTGCCACGGCTGTGATGTCTCCTGAGGAACTCCTCAGGGCC GTGCCACGGCTGTGATGTCTCCCGAGGAACTCCTCAGGGCC < 41bp 0.661905825145881 0.864830469978527 0.7336142 0.82269716 prediction 0.405849289665291 Functional Gain - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136729033 chr3:136729035 synonymous SNV . 0 23 hm5C_associated_SNPs_128315 0 0 1 0 1 IL20RB chr3:136728955 3'AG 136728955 Downstream 81bp
chr2 95719178 95719178 1 + T C STAD 95719175 + 95719155 95719195 41 CGTGGTCCATGCGGTGTTCTCTTTAATCAGATGGAAGTCTT CGTGGTCCATGCGGTGTTCTCTTCAATCAGATGGAAGTCTT < 41bp 0.471172780926935 0.70291818386344 0.024075747 0.111885935 prediction 0.40583636772688 Functional Gain - MAL ENSG00000172005 CDS Human protein_coding chr2:95719175 chr2:95719178 nonsynonymous SNV 0.933 3 24 hm5C_associated_SNPs_128316 0 0 0 0 1 MAL chr2:95719126 3'AG 95719126 Downstream 53bp
chr10 1043236 1043236 1 + C A LUSC 1043232 + 1043212 1043252 41 GTACCCAAATGTTGGGAAGTCCAGCTTCATCAACAAGGTTG GTACCCAAATGTTGGGAAGTCCAGATTCATCAACAAGGTTG < 41bp 0.289768171490926 0.702913451101423 0.22294837 0.25853664 prediction 0.405826902202845 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1043232 chr10:1043236 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_128318 0 0 1 2 2 GTPBP4 chr10:1043148 3'AG 1043148 Downstream 89bp
chr10 1043236 1043236 1 + C A LUSC 1043232 + 1043212 1043252 41 GTACCCAAATGTTGGGAAGTCCAGCTTCATCAACAAGGTTG GTACCCAAATGTTGGGAAGTCCAGATTCATCAACAAGGTTG < 41bp 0.289768171490926 0.702913451101423 0.22294837 0.25853664 prediction 0.405826902202845 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1043232 chr10:1043236 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_128318 0 0 1 2 2 GTPBP4 chr10:1043248 5'GT 1043248 Upstream 13bp
chr9 137017126 137017126 1 + A G rs34523253 137017123 + 137017103 137017143 41 AGTCGCATCTGGGACACCGCCTCAGGCCAGTGCCTGAAGAC AGTCGCATCTGGGACACCGCCTCGGGCCAGTGCCTGAAGAC < 41bp 0.631823999050126 0.834725471874411 0.049880117 0.07560623 prediction 0.405802945648571 Functional Gain - WDR5 ENSG00000196363 CDS Human protein_coding chr9:137017123 chr9:137017126 synonymous SNV . 0 24 hm5C_associated_SNPs_128324 0 0 1 0 2 WDR5 chr9:137017105 3'AG 137017105 Downstream 22bp
chr9 137017126 137017126 1 + A G rs34523253 137017123 + 137017103 137017143 41 AGTCGCATCTGGGACACCGCCTCAGGCCAGTGCCTGAAGAC AGTCGCATCTGGGACACCGCCTCGGGCCAGTGCCTGAAGAC < 41bp 0.631823999050126 0.834725471874411 0.049880117 0.07560623 prediction 0.405802945648571 Functional Gain - WDR5 ENSG00000196363 CDS Human protein_coding chr9:137017123 chr9:137017126 synonymous SNV . 0 24 hm5C_associated_SNPs_128324 0 0 1 0 2 WDR5 chr9:137017151 5'GT 137017151 Upstream 26bp
chr19 13049527 13049527 1 + C T OV 13049526 + 13049506 13049546 41 GTGCCGCTGCTGCTCGGCCTCCTCGGCCTGGCCGTCGCCGA GTGCCGCTGCTGCTCGGCCTCTTCGGCCTGGCCGTCGCCGA < 41bp 0.56600979906455 0.768911265665051 0.23929515 0.30418953 prediction 0.405802933201002 Functional Gain - CALR ENSG00000179218 CDS Human protein_coding chr19:13049526 chr19:13049527 nonsynonymous SNV 0.975 0 22 hm5C_associated_SNPs_128325 0 0 1 0 1 CALR chr19:13049584 5'GT 13049584 Upstream 58bp
chr8 23083546 23083546 1 + T C rs13255394 23083544 + 23083524 23083564 41 TGCACCCAGCGCTGCACGGGCATGGGGCGTGGGTAATCAGC TGCACCCAGCGCTGCACGGGCACGGGGCGTGGGTAATCAGC < 41bp 0.498552272545267 0.702899118852047 0.4306937 0.27600008 prediction 0.405798237704093 Functional Gain - LOC389641 ENSG00000246582 ncRNA_exonic Human processed_transcript chr8:23083544 chr8:23083546 . . 0 23 hm5C_associated_SNPs_128326 0 0 0 0 1 LOC389641 chr8:23083636 5'GT 23083636 Upstream 91bp
chr19 7704679 7704679 1 + A G THYM 7704676 + 7704656 7704696 41 GTCTGGAGGCCATTTATTTGCTGAGCCCCACGGAGAAGGTG GTCTGGAGGCCATTTATTTGCTGGGCCCCACGGAGAAGGTG < 41bp 0.617909693585826 0.820804805631461 0.07239708 0.10686427 prediction 0.405790224091271 Functional Gain - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7704676 chr19:7704679 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_128328 0 0 1 1 2 STXBP2 chr19:7704617 3'AG 7704617 Downstream 63bp
chr19 7704679 7704679 1 + A G THYM 7704676 + 7704656 7704696 41 GTCTGGAGGCCATTTATTTGCTGAGCCCCACGGAGAAGGTG GTCTGGAGGCCATTTATTTGCTGGGCCCCACGGAGAAGGTG < 41bp 0.617909693585826 0.820804805631461 0.07239708 0.10686427 prediction 0.405790224091271 Functional Gain - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7704676 chr19:7704679 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_128328 0 0 1 1 2 STXBP2 chr19:7704693 5'GT 7704693 Upstream 15bp
chr19 16238892 16238892 1 + T C rs147629164 16238889 + 16238869 16238909 41 ACCAGCGCGAAGGCCAACATCAATGTGGAAAATGTGAGTCC ACCAGCGCGAAGGCCAACATCAACGTGGAAAATGTGAGTCC < 41bp 0.564356993326257 0.767249817413661 0.20140994 0.38466007 prediction 0.405785648174809 Functional Gain - RAB8A ENSG00000167461 CDS Human protein_coding chr19:16238889 chr19:16238892 synonymous SNV . 0 24 hm5C_associated_SNPs_128329 0 0 1 0 2 RAB8A chr19:16238836 3'AG 16238836 Downstream 57bp
chr19 16238892 16238892 1 + T C rs147629164 16238889 + 16238869 16238909 41 ACCAGCGCGAAGGCCAACATCAATGTGGAAAATGTGAGTCC ACCAGCGCGAAGGCCAACATCAACGTGGAAAATGTGAGTCC < 41bp 0.564356993326257 0.767249817413661 0.20140994 0.38466007 prediction 0.405785648174809 Functional Gain - RAB8A ENSG00000167461 CDS Human protein_coding chr19:16238889 chr19:16238892 synonymous SNV . 0 24 hm5C_associated_SNPs_128329 0 0 1 0 2 RAB8A chr19:16238901 5'GT 16238901 Upstream 10bp
chr20 43547605 43547605 1 + C T LUSC 43547604 + 43547584 43547624 41 GCGGAGCTGGGGGCGCGGGCCCTGGAGTTCACCAACATCTA GCGGAGCTGGGGGCGCGGGCCTTGGAGTTCACCAACATCTA < 41bp 0.475733422570245 0.702891387419799 0.37488088 0.38374814 prediction 0.405782774839598 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43547604 chr20:43547605 synonymous SNV . 0 22 hm5C_associated_SNPs_128331 0 0 1 0 2 PABPC1L chr20:43547547 3'AG 43547547 Downstream 59bp
chr20 43547605 43547605 1 + C T LUSC 43547604 + 43547584 43547624 41 GCGGAGCTGGGGGCGCGGGCCCTGGAGTTCACCAACATCTA GCGGAGCTGGGGGCGCGGGCCTTGGAGTTCACCAACATCTA < 41bp 0.475733422570245 0.702891387419799 0.37488088 0.38374814 prediction 0.405782774839598 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43547604 chr20:43547605 synonymous SNV . 0 22 hm5C_associated_SNPs_128331 0 0 1 0 2 PABPC1L chr20:43547686 5'GT 43547686 Upstream 82bp
chr1 75602868 75602868 1 + C T LUAD 75602867 + 75602847 75602887 41 GTCCTCGCCCCGGTCCATGGCCTCGGGCTCCGGCTGCCCTC GTCCTCGCCCCGGTCCATGGCTTCGGGCTCCGGCTGCCCTC < 41bp 0.631959165780647 0.834848768853842 0.07565111 0.063726574 prediction 0.405779206146389 Functional Gain - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75602867 chr1:75602868 synonymous SNV . 0 22 hm5C_associated_SNPs_128333 0 0 0 0 3 LHX8 chr1:75602785 3'AG 75602785 Downstream 84bp
chr1 75602868 75602868 1 + C T LUAD 75602867 + 75602847 75602887 41 GTCCTCGCCCCGGTCCATGGCCTCGGGCTCCGGCTGCCCTC GTCCTCGCCCCGGTCCATGGCTTCGGGCTCCGGCTGCCCTC < 41bp 0.631959165780647 0.834848768853842 0.07565111 0.063726574 prediction 0.405779206146389 Functional Gain - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75602867 chr1:75602868 synonymous SNV . 0 22 hm5C_associated_SNPs_128333 0 0 0 0 3 LHX8 chr1:75602790 3'AG 75602790 Downstream 79bp
chr1 75602868 75602868 1 + C T LUAD 75602867 + 75602847 75602887 41 GTCCTCGCCCCGGTCCATGGCCTCGGGCTCCGGCTGCCCTC GTCCTCGCCCCGGTCCATGGCTTCGGGCTCCGGCTGCCCTC < 41bp 0.631959165780647 0.834848768853842 0.07565111 0.063726574 prediction 0.405779206146389 Functional Gain - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75602867 chr1:75602868 synonymous SNV . 0 22 hm5C_associated_SNPs_128333 0 0 0 0 3 LHX8 chr1:75602946 5'GT 75602946 Upstream 79bp
chr19 6746467 6746467 1 + T C STAD 6746464 + 6746444 6746484 41 CCCTCTACCCACCTTGCAGACAGTGGTGACCGAGGATTTTA CCCTCTACCCACCTTGCAGACAGCGGTGACCGAGGATTTTA < 41bp 0.483324345999373 0.702888191957985 0.222007 0.55294716 prediction 0.405776383915969 Functional Gain - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6746464 chr19:6746467 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_128334 0 0 1 0 1 TRIP10 chr19:6746463 3'AG 6746463 Downstream 5bp
chr1 206652454 206652454 1 + T G rs565611660 206652451 + 206652431 206652471 41 ACCCTCTTCAGCACAGCCATCCCTAAGGGGCTGGCCTTCAG ACCCTCTTCAGCACAGCCATCCCGAAGGGGCTGGCCTTCAG < 41bp 0.304473668088835 0.702886626449697 0.015364438 0.10125992 prediction 0.405773252899395 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206652451 chr1:206652454 synonymous SNV . 0 24 hm5C_associated_SNPs_128336 0 0 0 0 1 IKBKE chr1:206652476 5'GT 206652476 Upstream 23bp
chr7 16566605 16566605 1 + C T rs527666560 16566604 + 16566584 16566624 41 TGGGACCCGAACCCCGTGCCCCGTACCTTGCGATGCTGGCG TGGGACCCGAACCCCGTGCCCTGTACCTTGCGATGCTGGCG < 41bp 0.538981085983582 0.741863665756238 0.035621107 0.13266009 prediction 0.405765159545311 Functional Gain - LRRC72 ENSG00000205858 CDS Human protein_coding chr7:16566604 chr7:16566605 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_128337 0 0 0 0 1 LRRC72 chr7:16566667 5'GT 16566667 Upstream 63bp
chr16 331850 331850 1 + C T rs114176225 331849 + 331829 331869 41 AGGAAGAGCCTCTTGGAGATCCGGCAGCTGGACCCGGACGA AGGAAGAGCCTCTTGGAGATCTGGCAGCTGGACCCGGACGA < 41bp 0.592965551249418 0.795846984792682 0.7818498 0.43372184 prediction 0.405762867086528 Functional Gain - ARHGDIG ENSG00000242173 CDS Human protein_coding chr16:331849 chr16:331850 nonsynonymous SNV 0.005 0 22 hm5C_associated_SNPs_128338 0 0 1 0 1 ARHGDIG chr16:331925 5'GT 331925 Upstream 76bp
chr17 37793437 37793437 1 + A G rs375903988 37793434 + 37793414 37793454 41 CGCTACTGAGGCCGCGGAGCCGGACTGCGGTTGGGGCGGGA CGCTACTGAGGCCGCGGAGCCGGGCTGCGGTTGGGGCGGGA < 41bp 0.615156504391433 0.818037447659544 0.8186015 0.9027748 prediction 0.405761886536223 Functional Gain - STARD3 ENSG00000131748 UTR5 Human protein_coding chr17:37793434 chr17:37793437 . . 0 24 hm5C_associated_SNPs_128339 0 0 1 0 1 STARD3 chr17:37793484 5'GT 37793484 Upstream 48bp
chr5 135388602 135388602 1 + T A OV 135388598 + 135388578 135388618 41 AGTCTGTTTGGACCCCAGACCTGCTGAACAACCACATCTTG AGTCTGTTTGGACCCCAGACCTGCAGAACAACCACATCTTG < 41bp 0.366843473579986 0.702879930672363 0.6639707 0.27996504 prediction 0.405759861344726 Functional Gain - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135388598 chr5:135388602 nonsynonymous SNV 0.992 5 25 hm5C_associated_SNPs_128340 0 0 1 0 1 TGFBI chr5:135388596 3'AG 135388596 Downstream 7bp
chr10 106125707 106125707 1 + T C UCEC 106125704 + 106125684 106125724 41 CAGAAATAAAAGCCCTGCAGCAGTATGTGCAGAAGAGCAAG CAGAAATAAAAGCCCTGCAGCAGCATGTGCAGAAGAGCAAG < 41bp 0.478945054193442 0.702879928260639 0.5144009 0.5361641 prediction 0.405759856521279 Functional Gain - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106125704 chr10:106125707 nonsynonymous SNV 0.642 0 24 hm5C_associated_SNPs_128341 0 0 0 0 1 CFAP58 chr10:106125766 5'GT 106125766 Upstream 60bp
chr2 234967531 234967531 1 + C T UCEC 234967530 + 234967510 234967550 41 ATGAATTTAGAGTTCAGCATCCGGGAGACTACATGCAGGAA ATGAATTTAGAGTTCAGCATCTGGGAGACTACATGCAGGAA < 41bp 0.610253698355311 0.813131027233066 0.88601136 0.44928458 prediction 0.405754657755511 Functional Gain - SPP2 ENSG00000072080 CDS Human protein_coding chr2:234967530 chr2:234967531 nonsynonymous SNV 0.004 3 22 hm5C_associated_SNPs_128344 0 0 0 0 2 SPP2 chr2:234967480 3'AG 234967480 Downstream 52bp
chr2 234967531 234967531 1 + C T UCEC 234967530 + 234967510 234967550 41 ATGAATTTAGAGTTCAGCATCCGGGAGACTACATGCAGGAA ATGAATTTAGAGTTCAGCATCTGGGAGACTACATGCAGGAA < 41bp 0.610253698355311 0.813131027233066 0.88601136 0.44928458 prediction 0.405754657755511 Functional Gain - SPP2 ENSG00000072080 CDS Human protein_coding chr2:234967530 chr2:234967531 nonsynonymous SNV 0.004 3 22 hm5C_associated_SNPs_128344 0 0 0 0 2 SPP2 chr2:234967602 5'GT 234967602 Upstream 72bp
chr1 4832529 4832529 1 + C A LUAD 4832528 + 4832508 4832548 41 GGCATCTGTGCCCGTGTACACCGATGAGACGCTGCACTCGA GGCATCTGTGCCCGTGTACACAGATGAGACGCTGCACTCGA < 41bp 0.429361986081173 0.702877242483576 0.305174 0.7054787 prediction 0.405754484967152 Functional Gain - AJAP1 ENSG00000196581 CDS Human protein_coding chr1:4832528 chr1:4832529 synonymous SNV . 0 22 hm5C_associated_SNPs_128345 0 0 0 0 1 AJAP1 chr1:4832585 5'GT 4832585 Upstream 57bp
chr1 150413467 150413467 1 + A G LUAD 150413464 + 150413444 150413484 41 GGAAGATAGAAATGTATACCCAGAAGAAATGATTGTGGCAT GGAAGATAGAAATGTATACCCAGGAGAAATGATTGTGGCAT < 41bp 0.474924932362 0.702875782490006 0.50634956 0.88699347 prediction 0.405751564980011 Functional Gain - RPRD2 ENSG00000163125 CDS Human protein_coding chr1:150413464 chr1:150413467 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_128346 0 0 1 0 2 RPRD2 chr1:150413399 3'AG 150413399 Downstream 69bp
chr1 150413467 150413467 1 + A G LUAD 150413464 + 150413444 150413484 41 GGAAGATAGAAATGTATACCCAGAAGAAATGATTGTGGCAT GGAAGATAGAAATGTATACCCAGGAGAAATGATTGTGGCAT < 41bp 0.474924932362 0.702875782490006 0.50634956 0.88699347 prediction 0.405751564980011 Functional Gain - RPRD2 ENSG00000163125 CDS Human protein_coding chr1:150413464 chr1:150413467 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_128346 0 0 1 0 2 RPRD2 chr1:150413499 5'GT 150413499 Upstream 33bp
chr11 34160752 34160752 1 + A G LGG 34160749 + 34160729 34160769 41 GTTGCCCAGAATGACCTGACCGGAGAGCACTCGTGCATCAT GTTGCCCAGAATGACCTGACCGGGGAGCACTCGTGCATCAT < 41bp 0.62428243240231 0.827149709629 0.7074225 0.9132192 prediction 0.405734554453381 Functional Gain - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34160749 chr11:34160752 synonymous SNV . 0 24 hm5C_associated_SNPs_128349 0 0 1 0 2 NAT10 chr11:34160738 3'AG 34160738 Downstream 15bp
chr11 34160752 34160752 1 + A G LGG 34160749 + 34160729 34160769 41 GTTGCCCAGAATGACCTGACCGGAGAGCACTCGTGCATCAT GTTGCCCAGAATGACCTGACCGGGGAGCACTCGTGCATCAT < 41bp 0.62428243240231 0.827149709629 0.7074225 0.9132192 prediction 0.405734554453381 Functional Gain - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34160749 chr11:34160752 synonymous SNV . 0 24 hm5C_associated_SNPs_128349 0 0 1 0 2 NAT10 chr11:34160834 5'GT 34160834 Upstream 83bp
chr2 99812108 99812108 1 + T C rs7572157 99812105 + 99812085 99812125 41 TCTAACACGTGCCTCAAAAGCACTGGGGAGTTAGTAGTGCA TCTAACACGTGCCTCAAAAGCACCGGGGAGTTAGTAGTGCA < 41bp 0.577674039648129 0.780535231456751 0.10722628 0.14521518 prediction 0.405722383617244 Functional Gain - MRPL30 ENSG00000185414;ENSG00000241962 CDS Human other chr2:99812105 chr2:99812108 synonymous SNV . 0 24 hm5C_associated_SNPs_128351 0 0 1 0 1 MRPL30 chr2:99812036 3'AG 99812036 Downstream 73bp
chr6 167721306 167721306 1 + T G SKCM 167721302 + 167721282 167721322 41 TGTCCTGCATGATTGCCCTACTGCTGTGGAGACCTCGTGCT TGTCCTGCATGATTGCCCTACTGCGGTGGAGACCTCGTGCT < 41bp 0.551854201287406 0.75471226645898 0.23783365 0.2741487 prediction 0.405716130343148 Functional Gain - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167721302 chr6:167721306 nonsynonymous SNV 0.583 1 25 hm5C_associated_SNPs_128353 0 0 0 0 2 UNC93A chr6:167721267 3'AG 167721267 Downstream 40bp
chr6 167721306 167721306 1 + T G SKCM 167721302 + 167721282 167721322 41 TGTCCTGCATGATTGCCCTACTGCTGTGGAGACCTCGTGCT TGTCCTGCATGATTGCCCTACTGCGGTGGAGACCTCGTGCT < 41bp 0.551854201287406 0.75471226645898 0.23783365 0.2741487 prediction 0.405716130343148 Functional Gain - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167721302 chr6:167721306 nonsynonymous SNV 0.583 1 25 hm5C_associated_SNPs_128353 0 0 0 0 2 UNC93A chr6:167721398 5'GT 167721398 Upstream 93bp
chr16 1825672 1825672 1 + C G rs149208934 1825668 + 1825648 1825688 41 TGCGCCGTTACCAAGGCTCTCGCCCAGTATCCCCTCAAGTG TGCGCCGTTACCAAGGCTCTCGCCGAGTATCCCCTCAAGTG < 41bp 0.405133834969768 0.702852530265116 0.061479807 0.32535842 prediction 0.405705060530232 Functional Gain - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825668 chr16:1825672 nonsynonymous SNV 0.024 1 25 hm5C_associated_SNPs_128355 0 0 0 0 2 EME2 chr16:1825685 5'GT 1825685 Upstream 14bp
chr16 1825672 1825672 1 + C G rs149208934 1825668 + 1825648 1825688 41 TGCGCCGTTACCAAGGCTCTCGCCCAGTATCCCCTCAAGTG TGCGCCGTTACCAAGGCTCTCGCCGAGTATCCCCTCAAGTG < 41bp 0.405133834969768 0.702852530265116 0.061479807 0.32535842 prediction 0.405705060530232 Functional Gain - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825668 chr16:1825672 nonsynonymous SNV 0.024 1 25 hm5C_associated_SNPs_128355 0 0 0 0 2 EME2 chr16:1825727 5'GT 1825727 Upstream 56bp
chr7 6628261 6628261 1 + C A UCEC 6628257 + 6628237 6628277 41 TCTGCTCCTAGTACCTGTTCCTGACTTTTCCACGGATTGTC TCTGCTCCTAGTACCTGTTCCTGAATTTTCCACGGATTGTC < 41bp 0.290396691088333 0.702850237216698 0.039531887 0.16436785 prediction 0.405700474433395 Functional Gain - ZDHHC4 ENSG00000136247 CDS Human protein_coding chr7:6628257 chr7:6628261 nonsynonymous SNV 0.596 3 25 hm5C_associated_SNPs_128357 0 0 1 0 1 ZDHHC4 chr7:6628248 3'AG 6628248 Downstream 14bp
chr19 55495054 55495054 1 + C T HNSC 55495053 + 55495033 55495073 41 AGGTAATAAAGGAGAATCTCCCGGAGAATGTCACTGCGTCT AGGTAATAAAGGAGAATCTCCTGGAGAATGTCACTGCGTCT < 41bp 0.593512201620569 0.796360150065761 0.91234934 0.88610053 prediction 0.405695896890384 Functional Gain - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55495053 chr19:55495054 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_128359 0 0 0 0 1 NLRP2 chr19:55495096 5'GT 55495096 Upstream 43bp
chr7 2566829 2566829 1 + C A UCEC 2566828 + 2566808 2566848 41 CCGGACACACCCTGGTGTCCCCGCACTGCCATCTTCTAGTG CCGGACACACCCTGGTGTCCCAGCACTGCCATCTTCTAGTG < 41bp 0.622856598102316 0.825704210680149 0.14366686 0.311152 prediction 0.405695225155666 Functional Gain - LFNG ENSG00000106003 CDS Human protein_coding chr7:2566828 chr7:2566829 nonsynonymous SNV 0.935 0 22 hm5C_associated_SNPs_128360 0 0 0 0 1 LFNG chr7:2566780 3'AG 2566780 Downstream 50bp
chr4 15559074 15559074 1 + C T UCEC 15559073 + 15559053 15559093 41 AGCCAAGAGGTGCCAGAATTCCGAAATTATAAGCAAGTTCC AGCCAAGAGGTGCCAGAATTCTGAAATTATAAGCAAGTTCC < 41bp 0.444808286962129 0.702844570819593 0.3133955 0.27315873 prediction 0.405689141639186 Functional Gain - CC2D2A ENSG00000048342 CDS Human protein_coding chr4:15559073 chr4:15559074 stopgain 0.999 1 22 hm5C_associated_SNPs_128361 1 0 0 0 1 CC2D2A chr4:15559130 5'GT 15559130 Upstream 57bp
chr9 312113 312113 1 + C T CESC 312112 + 312092 312132 41 GAGAAGCAGAACGAGGAGGCCCGGAGGACCAATAGGCAGGC GAGAAGCAGAACGAGGAGGCCTGGAGGACCAATAGGCAGGC < 41bp 0.578473782054677 0.781313255226134 0.5139377 0.528695 prediction 0.405678946342915 Functional Gain - DOCK8 ENSG00000107099 CDS Human protein_coding chr9:312112 chr9:312113 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_128364 0 0 1 0 1 DOCK8 chr9:312166 5'GT 312166 Upstream 54bp
chr8 22474992 22474992 1 + C T SKCM 22474991 + 22474971 22475011 41 GGGAGAGGAAGAAGAAAAACCCCGGGGCGAGGCTTCTGAGG GGGAGAGGAAGAAGAAAAACCTCGGGGCGAGGCTTCTGAGG < 41bp 0.632575475759997 0.835414327581984 0.84918904 0.8653942 prediction 0.405677703643972 Functional Gain - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22474991 chr8:22474992 synonymous SNV . 0 22 hm5C_associated_SNPs_128366 0 0 1 0 2 CCAR2 chr8:22474933 3'AG 22474933 Downstream 60bp
chr8 22474992 22474992 1 + C T SKCM 22474991 + 22474971 22475011 41 GGGAGAGGAAGAAGAAAAACCCCGGGGCGAGGCTTCTGAGG GGGAGAGGAAGAAGAAAAACCTCGGGGCGAGGCTTCTGAGG < 41bp 0.632575475759997 0.835414327581984 0.84918904 0.8653942 prediction 0.405677703643972 Functional Gain - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22474991 chr8:22474992 synonymous SNV . 0 22 hm5C_associated_SNPs_128366 0 0 1 0 2 CCAR2 chr8:22475077 5'GT 22475077 Upstream 86bp
chr22 40800432 40800432 1 + C T HNSC 40800431 + 40800411 40800451 41 GCTCCGCTCCCTGGTGCTGGCCGGCATCCCACATGGCATGA GCTCCGCTCCCTGGTGCTGGCTGGCATCCCACATGGCATGA < 41bp 0.459278784054391 0.702831823180791 0.4382972 0.29912466 prediction 0.405663646361583 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40800431 chr22:40800432 synonymous SNV . 0 22 hm5C_associated_SNPs_128369 0 0 1 0 1 SGSM3 chr22:40800459 5'GT 40800459 Upstream 28bp
chr1 179033164 179033164 1 + C T LUAD 179033163 + 179033143 179033183 41 GATCTGTCACACTTTGGCTTCCAGATGTGTGGCCTCTGCAG GATCTGTCACACTTTGGCTTCTAGATGTGTGGCCTCTGCAG < 41bp 0.646689868983642 0.849519635102437 0.89870363 0.51478165 prediction 0.40565953223759 Functional Gain - FAM20B ENSG00000116199 CDS Human protein_coding chr1:179033163 chr1:179033164 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_128370 0 0 1 0 1 FAM20B chr1:179033233 5'GT 179033233 Upstream 70bp
chr10 54076337 54076337 1 + C A SARC 54076336 + 54076316 54076356 41 CAAGAAGGTTCTGTTTGTCTCCGGTCATCAGACTGTGCCTC CAAGAAGGTTCTGTTTGTCTCAGGTCATCAGACTGTGCCTC < 41bp 0.436896125087792 0.702827876246541 0.6256753 0.8838315 prediction 0.405655752493082 Functional Gain - DKK1 ENSG00000107984 CDS Human protein_coding chr10:54076336 chr10:54076337 synonymous SNV . 0 22 hm5C_associated_SNPs_128372 0 0 1 0 1 DKK1 chr10:54076314 3'AG 54076314 Downstream 24bp
chr11 65688856 65688856 1 + C A UCEC 65688855 + 65688835 65688875 41 CTGCCTTTGCCCCCAGCGCCCCCGGGCCCCTCAGCACCTGA CTGCCTTTGCCCCCAGCGCCCACGGGCCCCTCAGCACCTGA < 41bp 0.638718905715623 0.841539661083251 0.10157564 0.20375031 prediction 0.405641510735256 Functional Gain - DRAP1 ENSG00000175550 CDS Human protein_coding chr11:65688855 chr11:65688856 nonsynonymous SNV 0.606 1 22 hm5C_associated_SNPs_128379 0 0 1 0 1 DRAP1 chr11:65688801 3'AG 65688801 Downstream 56bp
chr1 209779010 209779010 1 + A G rs35618105 209779007 + 209778987 209779027 41 CATGAGAATGGCATCGTCCACAGAGACTTAAAGGTGTCAAG CATGAGAATGGCATCGTCCACAGGGACTTAAAGGTGTCAAG < 41bp 0.614318376210521 0.817138502202951 0.86582136 0.8901358 prediction 0.405640251984859 Functional Gain - CAMK1G ENSG00000008118 CDS Human protein_coding chr1:209779007 chr1:209779010 synonymous SNV . 0 24 hm5C_associated_SNPs_128380 0 0 0 0 1 CAMK1G chr1:209779019 5'GT 209779019 Upstream 10bp
chr20 34832693 34832693 1 + C T BLCA 34832692 + 34832672 34832712 41 TTTGAGCATTGGAAGCGGCTCCTGAACCTCCTGTGCCGGTC TTTGAGCATTGGAAGCGGCTCTTGAACCTCCTGTGCCGGTC < 41bp 0.436324511432677 0.702817755961773 0.22131535 0.19024014 prediction 0.405635511923546 Functional Gain - AAR2 ENSG00000131043 CDS Human protein_coding chr20:34832692 chr20:34832693 synonymous SNV . 0 22 hm5C_associated_SNPs_128382 0 0 1 0 1 AAR2 chr20:34832619 3'AG 34832619 Downstream 75bp
chr4 79494343 79494343 1 + C T UCEC 79494342 + 79494322 79494362 41 ATTTCCTTCTAGGTTGGACACCGAGGAACAGTAAGAGATTA ATTTCCTTCTAGGTTGGACACTGAGGAACAGTAAGAGATTA < 41bp 0.468528413410735 0.702811235334104 0.3607654 0.24427697 prediction 0.405622470668208 Functional Gain - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79494342 chr4:79494343 stopgain 0.982 1 22 hm5C_associated_SNPs_128385 0 0 0 0 2 ANXA3 chr4:79494334 3'AG 79494334 Downstream 10bp
chr4 79494343 79494343 1 + C T UCEC 79494342 + 79494322 79494362 41 ATTTCCTTCTAGGTTGGACACCGAGGAACAGTAAGAGATTA ATTTCCTTCTAGGTTGGACACTGAGGAACAGTAAGAGATTA < 41bp 0.468528413410735 0.702811235334104 0.3607654 0.24427697 prediction 0.405622470668208 Functional Gain - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79494342 chr4:79494343 stopgain 0.982 1 22 hm5C_associated_SNPs_128385 0 0 0 0 2 ANXA3 chr4:79494421 5'GT 79494421 Upstream 79bp
chr13 114286001 114286001 1 + C A GBM 114285997 + 114285977 114286017 41 CTGGTGGTAGGAAGCCCACACACCCCCAGCACTCACTTTGC CTGGTGGTAGGAAGCCCACACACCACCAGCACTCACTTTGC < 41bp 0.292119622229394 0.702809018045605 0.026088566 0.08010116 prediction 0.40561803609121 Functional Gain - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114285997 chr13:114286001 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_128387 0 0 1 0 2 TFDP1 chr13:114285938 3'AG 114285938 Downstream 64bp
chr13 114286001 114286001 1 + C A GBM 114285997 + 114285977 114286017 41 CTGGTGGTAGGAAGCCCACACACCCCCAGCACTCACTTTGC CTGGTGGTAGGAAGCCCACACACCACCAGCACTCACTTTGC < 41bp 0.292119622229394 0.702809018045605 0.026088566 0.08010116 prediction 0.40561803609121 Functional Gain - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114285997 chr13:114286001 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_128387 0 0 1 0 2 TFDP1 chr13:114286059 5'GT 114286059 Upstream 59bp
chr2 210880943 210880943 1 + C A rs77647855 210880939 + 210880919 210880959 41 TTGATACAGTCTTGCTCTGTCACCCAGGCTGAAGTGCAGTG TTGATACAGTCTTGCTCTGTCACCAAGGCTGAAGTGCAGTG < 41bp 0.294731081025283 0.702804435290978 0.018835604 0.15071568 prediction 0.405608870581955 Functional Gain - RPE ENSG00000197713 CDS Human protein_coding chr2:210880939 chr2:210880943 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_128391 0 0 1 0 2 RPE chr2:210880928 3'AG 210880928 Downstream 16bp
chr2 210880943 210880943 1 + C A rs77647855 210880939 + 210880919 210880959 41 TTGATACAGTCTTGCTCTGTCACCCAGGCTGAAGTGCAGTG TTGATACAGTCTTGCTCTGTCACCAAGGCTGAAGTGCAGTG < 41bp 0.294731081025283 0.702804435290978 0.018835604 0.15071568 prediction 0.405608870581955 Functional Gain - RPE ENSG00000197713 CDS Human protein_coding chr2:210880939 chr2:210880943 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_128391 0 0 1 0 2 RPE chr2:210880981 5'GT 210880981 Upstream 39bp
chrX 2947341 2947341 1 + C A LUAD 2947337 + 2947317 2947357 41 TGCTGGAAGGAAGGGCGTCCCACTCCGACCACGAGTTCCTC TGCTGGAAGGAAGGGCGTCCCACTACGACCACGAGTTCCTC < 41bp 0.274693144230317 0.702803999482191 0.055099636 0.06594181 prediction 0.405607998964381 Functional Gain - ARSH ENSG00000205667 CDS Human protein_coding chrX:2947337 chrX:2947341 nonsynonymous SNV 0.033 4 25 hm5C_associated_SNPs_128392 0 0 0 0 1 ARSH chrX:2947409 5'GT 2947409 Upstream 69bp
chr3 183898902 183898902 1 + C T GBM 183898901 + 183898881 183898921 41 CTGAGTGCCCATGTGTCGGGCCGGGTGGTGATGAAGAGCTA CTGAGTGCCCATGTGTCGGGCTGGGTGGTGATGAAGAGCTA < 41bp 0.619624296591739 0.822427749913842 0.46696553 0.470093 prediction 0.405606906644206 Functional Gain - AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183898901 chr3:183898902 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_128393 0 0 1 0 1 AP2M1 chr3:183898873 3'AG 183898873 Downstream 30bp
chr2 198318374 198318374 1 + C T COAD 198318373 + 198318353 198318393 41 AGCGGCCGGGGCGCAGGCGCCCGTGCGGAATGGCAGGTAAT AGCGGCCGGGGCGCAGGCGCCTGTGCGGAATGGCAGGTAAT < 41bp 0.488907157614675 0.702802371504446 0.56076854 0.57168823 prediction 0.405604743008892 Functional Gain - COQ10B ENSG00000115520 CDS Human protein_coding chr2:198318373 chr2:198318374 synonymous SNV . 0 22 hm5C_associated_SNPs_128395 0 0 1 0 1 COQ10B chr2:198318388 5'GT 198318388 Upstream 15bp
chr17 78166305 78166305 1 + A G BLCA 78166302 + 78166282 78166322 41 GTCTGGCCTGTCTTTGGCAGCTCAAGCAGGAAGCCAGGACC GTCTGGCCTGTCTTTGGCAGCTCGAGCAGGAAGCCAGGACC < 41bp 0.456139583508975 0.702800648406009 0.8116188 0.75569534 prediction 0.405601296812018 Functional Gain - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78166302 chr17:78166305 nonsynonymous SNV 0.732 0 24 hm5C_associated_SNPs_128396 0 0 0 0 1 CARD14 chr17:78166302 3'AG 78166302 Downstream 4bp
chr18 13752398 13752398 1 + T C UCEC 13752396 + 13752376 13752416 41 TATGAACATGCAGCAAAGTACATGAAGAACAGTCAAGTAAG TATGAACATGCAGCAAAGTACACGAAGAACAGTCAAGTAAG < 41bp 0.484113736778981 0.702799706218672 0.017598659 0.04216683 prediction 0.405599412437345 Functional Gain - RNMT ENSG00000101654 CDS Human protein_coding chr18:13752396 chr18:13752398 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_128398 0 0 1 1 2 RNMT chr18:13752325 3'AG 13752325 Downstream 74bp
chr18 13752398 13752398 1 + T C UCEC 13752396 + 13752376 13752416 41 TATGAACATGCAGCAAAGTACATGAAGAACAGTCAAGTAAG TATGAACATGCAGCAAAGTACACGAAGAACAGTCAAGTAAG < 41bp 0.484113736778981 0.702799706218672 0.017598659 0.04216683 prediction 0.405599412437345 Functional Gain - RNMT ENSG00000101654 CDS Human protein_coding chr18:13752396 chr18:13752398 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_128398 0 0 1 1 2 RNMT chr18:13752426 5'GT 13752426 Upstream 29bp
chr16 88781040 88781040 1 + A G rs8059048 88781037 + 88781017 88781057 41 TCAGACCTCCTCGCGTCTCTCCCAGATGCAGTCACCCATCC TCAGACCTCCTCGCGTCTCTCCCGGATGCAGTCACCCATCC < 41bp 0.624681437576422 0.827480032295335 0.18482661 0.84473073 prediction 0.405597189437825 Functional Gain - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781037 chr16:88781040 nonsynonymous SNV 0.063 1 24 hm5C_associated_SNPs_128400 0 0 1 0 1 CTU2 chr16:88780995 3'AG 88780995 Downstream 46bp
chr17 9511486 9511486 1 + T C rs137995073 9511483 + 9511463 9511503 41 ATGGGGGGTTTGTTGGTGGGCTCTGGAGCCGGACTGCTGGT ATGGGGGGTTTGTTGGTGGGCTCCGGAGCCGGACTGCTGGT < 41bp 0.585780435531242 0.788575311741675 0.2689592 0.65100265 prediction 0.405589752420866 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9511483 chr17:9511486 synonymous SNV . 0 24 hm5C_associated_SNPs_128403 0 0 0 0 2 CFAP52 chr17:9511436 3'AG 9511436 Downstream 51bp
chr17 9511486 9511486 1 + T C rs137995073 9511483 + 9511463 9511503 41 ATGGGGGGTTTGTTGGTGGGCTCTGGAGCCGGACTGCTGGT ATGGGGGGTTTGTTGGTGGGCTCCGGAGCCGGACTGCTGGT < 41bp 0.585780435531242 0.788575311741675 0.2689592 0.65100265 prediction 0.405589752420866 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9511483 chr17:9511486 synonymous SNV . 0 24 hm5C_associated_SNPs_128403 0 0 0 0 2 CFAP52 chr17:9511536 5'GT 9511536 Upstream 51bp
chr1 15386778 15386778 1 + C T COAD 15386777 + 15386757 15386797 41 GACATCAACTCCCCTCGACACCGGACACACTCCCTCTGCAA GACATCAACTCCCCTCGACACTGGACACACTCCCTCTGCAA < 41bp 0.617920155785863 0.820704538008533 0.15543988 0.077509105 prediction 0.40556876444534 Functional Gain - KAZN ENSG00000189337 CDS Human protein_coding chr1:15386777 chr1:15386778 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_128406 0 0 1 0 1 KAZN chr1:15386798 5'GT 15386798 Upstream 21bp
chr11 65715203 65715203 1 + C T rs117506262 65715202 + 65715182 65715222 41 AGCCCCAGCTTCAACAACCTCCGAAGGCGACAATGGAGGAA AGCCCCAGCTTCAACAACCTCTGAAGGCGACAATGGAGGAA < 41bp 0.592063191694575 0.794842456409127 0.8790275 0.60406977 prediction 0.405558529429104 Functional Gain - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65715202 chr11:65715203 unknown 0.000 0 22 hm5C_associated_SNPs_128410 0 0 0 1 1 TSGA10IP chr11:65715299 5'GT 65715299 Upstream 97bp
chr1 40422876 40422876 1 + C A LGG 40422872 + 40422852 40422892 41 CTGGGTTTCTTCCTTCAGATCTACCTATTGGATGTGGCTCA CTGGGTTTCTTCCTTCAGATCTACATATTGGATGTGGCTCA < 41bp 0.278502054267664 0.702778841979663 0.07763156 0.75260186 prediction 0.405557683959325 Functional Gain - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40422872 chr1:40422876 nonsynonymous SNV 0.991 5 25 hm5C_associated_SNPs_128411 0 0 0 1 2 MFSD2A chr1:40422870 3'AG 40422870 Downstream 7bp
chr1 40422876 40422876 1 + C A LGG 40422872 + 40422852 40422892 41 CTGGGTTTCTTCCTTCAGATCTACCTATTGGATGTGGCTCA CTGGGTTTCTTCCTTCAGATCTACATATTGGATGTGGCTCA < 41bp 0.278502054267664 0.702778841979663 0.07763156 0.75260186 prediction 0.405557683959325 Functional Gain - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40422872 chr1:40422876 nonsynonymous SNV 0.991 5 25 hm5C_associated_SNPs_128411 0 0 0 1 2 MFSD2A chr1:40422893 5'GT 40422893 Upstream 18bp
chr12 49943420 49943420 1 + C T STAD 49943419 + 49943399 49943439 41 GAACAATGGCATCGACACCACCGAGGTGCGGCCTCCGGGGC GAACAATGGCATCGACACCACTGAGGTGCGGCCTCCGGGGC < 41bp 0.599126435530557 0.801902868573068 0.37198368 0.5755777 prediction 0.405552866085021 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49943419 chr12:49943420 synonymous SNV . 0 22 hm5C_associated_SNPs_128412 0 0 0 0 1 KCNH3 chr12:49943423 5'GT 49943423 Upstream 4bp
chr1 159778798 159778798 1 + C G rs145922130 159778797 + 159778777 159778817 41 GCCATCCCCTCTCCTGAGCCCCGAGAGGGTAGCCTGGTGAC GCCATCCCCTCTCCTGAGCCCGGAGAGGGTAGCCTGGTGAC < 41bp 0.369453023633519 0.702770006764875 0.16728362 0.86572206 prediction 0.405540013529751 Functional Gain - FCRL6 ENSG00000181036 CDS Human protein_coding chr1:159778797 chr1:159778798 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_128414 0 0 0 0 1 FCRL6 chr1:159778751 3'AG 159778751 Downstream 48bp
chr2 69207142 69207142 1 + T A LUAD 69207140 + 69207120 69207160 41 CTGAGCAAGTTCGGAAAAAACATTGCAAACATGTGTCGTGG CTGAGCAAGTTCGGAAAAAACAATGCAAACATGTGTCGTGG < 41bp 0.491170760269297 0.702763504708015 0.19005209 0.30995464 prediction 0.405527009416031 Functional Gain - GKN1 ENSG00000169605 CDS Human protein_coding chr2:69207140 chr2:69207142 nonsynonymous SNV 0.188 5 23 hm5C_associated_SNPs_128416 0 0 0 0 2 GKN1 chr2:69207045 3'AG 69207045 Downstream 98bp
chr2 69207142 69207142 1 + T A LUAD 69207140 + 69207120 69207160 41 CTGAGCAAGTTCGGAAAAAACATTGCAAACATGTGTCGTGG CTGAGCAAGTTCGGAAAAAACAATGCAAACATGTGTCGTGG < 41bp 0.491170760269297 0.702763504708015 0.19005209 0.30995464 prediction 0.405527009416031 Functional Gain - GKN1 ENSG00000169605 CDS Human protein_coding chr2:69207140 chr2:69207142 nonsynonymous SNV 0.188 5 23 hm5C_associated_SNPs_128416 0 0 0 0 2 GKN1 chr2:69207192 5'GT 69207192 Upstream 51bp
chr10 43600617 43600617 1 + C T STAD 43600616 + 43600596 43600636 41 GGGCGTCGACACCGCCAGCGCCGTGGTGGAGTTCAAGCGGA GGGCGTCGACACCGCCAGCGCTGTGGTGGAGTTCAAGCGGA < 41bp 0.459596925443134 0.702752546619149 0.42844626 0.289184 prediction 0.405505093238298 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43600616 chr10:43600617 synonymous SNV . 0 22 hm5C_associated_SNPs_128424 0 0 0 0 1 RET chr10:43600641 5'GT 43600641 Upstream 25bp
chr6 37414178 37414178 1 + C T SKCM 37414177 + 37414157 37414197 41 AGAGGCTTGGGTCTGACACTCCGGGGCTTTGACCAGGAGCT AGAGGCTTGGGTCTGACACTCTGGGGCTTTGACCAGGAGCT < 41bp 0.628103556070148 0.830855103204936 0.90053105 0.8899398 prediction 0.405503094269577 Functional Gain - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37414177 chr6:37414178 nonsynonymous SNV 0.979 1 22 hm5C_associated_SNPs_128425 0 0 1 0 1 CMTR1 chr6:37414225 5'GT 37414225 Upstream 48bp
chr19 43865320 43865320 1 + C A rs587670082 43865316 + 43865296 43865336 41 ACTCACATCAACCCTGGTGGCGACCTAAAGCTGCAGCGCTG ACTCACATCAACCCTGGTGGCGACATAAAGCTGCAGCGCTG < 41bp 0.327225404193867 0.70274965365951 0.09315041 0.2430653 prediction 0.40549930731902 Functional Gain - CD177 ENSG00000204936 CDS Human protein_coding chr19:43865316 chr19:43865320 unknown . 0 25 hm5C_associated_SNPs_128427 0 1 0 0 1 CD177 chr19:43865295 3'AG 43865295 Downstream 26bp
chr2 120003077 120003077 1 + C T SKCM 120003076 + 120003056 120003096 41 CTCTTGCAGCCACCAAAATGCCAGAAGAGATGGACAAGCCA CTCTTGCAGCCACCAAAATGCTAGAAGAGATGGACAAGCCA < 41bp 0.450158881220648 0.702748493539764 0.29348183 0.69329077 prediction 0.405496987079528 Functional Gain - STEAP3 ENSG00000115107 CDS Human protein_coding chr2:120003076 chr2:120003077 nonsynonymous SNV 0.554 0 22 hm5C_associated_SNPs_128429 0 0 1 0 1 STEAP3 chr2:120003065 3'AG 120003065 Downstream 13bp
chr19 54963340 54963340 1 + C A UCEC 54963339 + 54963319 54963359 41 GAGACGCCGATGCACGAGAACCCGGAGTGGGAGAAGGCCCG GAGACGCCGATGCACGAGAACACGGAGTGGGAGAAGGCCCG < 41bp 0.437597839939606 0.702743798239641 0.25797617 0.33294335 prediction 0.405487596479281 Functional Gain - LENG8 ENSG00000167615 CDS Human protein_coding chr19:54963339 chr19:54963340 nonsynonymous SNV 0.983 4 22 hm5C_associated_SNPs_128432 0 0 1 0 1 LENG8 chr19:54963270 3'AG 54963270 Downstream 71bp
chr19 38778565 38778565 1 + T C OV 38778562 + 38778542 38778582 41 AGCAGGAATGCAGCGGATTCCTCTGTCCCAAGTGGTAGGTT AGCAGGAATGCAGCGGATTCCTCCGTCCCAAGTGGTAGGTT < 41bp 0.571115796537077 0.773855608082305 0.13227484 0.18957964 prediction 0.405479623090458 Functional Gain - SPINT2 ENSG00000167642 CDS Human protein_coding chr19:38778562 chr19:38778565 synonymous SNV . 0 24 hm5C_associated_SNPs_128433 0 0 0 0 2 SPINT2 chr19:38778516 3'AG 38778516 Downstream 50bp
chr19 38778565 38778565 1 + T C OV 38778562 + 38778542 38778582 41 AGCAGGAATGCAGCGGATTCCTCTGTCCCAAGTGGTAGGTT AGCAGGAATGCAGCGGATTCCTCCGTCCCAAGTGGTAGGTT < 41bp 0.571115796537077 0.773855608082305 0.13227484 0.18957964 prediction 0.405479623090458 Functional Gain - SPINT2 ENSG00000167642 CDS Human protein_coding chr19:38778562 chr19:38778565 synonymous SNV . 0 24 hm5C_associated_SNPs_128433 0 0 0 0 2 SPINT2 chr19:38778575 5'GT 38778575 Upstream 11bp
chr8 26265596 26265596 1 + T C COAD 26265593 + 26265573 26265613 41 GACTGGGTATCAGACTGGTCCAGTAGACCCGAAAACATTCC GACTGGGTATCAGACTGGTCCAGCAGACCCGAAAACATTCC < 41bp 0.569008262515777 0.771745176318517 0.20481172 0.309537 prediction 0.40547382760548 Functional Gain - BNIP3L ENSG00000104765 CDS Human protein_coding chr8:26265593 chr8:26265596 stoploss . 0 24 hm5C_associated_SNPs_128435 0 0 1 0 2 BNIP3L chr8:26265516 3'AG 26265516 Downstream 81bp
chr8 26265596 26265596 1 + T C COAD 26265593 + 26265573 26265613 41 GACTGGGTATCAGACTGGTCCAGTAGACCCGAAAACATTCC GACTGGGTATCAGACTGGTCCAGCAGACCCGAAAACATTCC < 41bp 0.569008262515777 0.771745176318517 0.20481172 0.309537 prediction 0.40547382760548 Functional Gain - BNIP3L ENSG00000104765 CDS Human protein_coding chr8:26265593 chr8:26265596 stoploss . 0 24 hm5C_associated_SNPs_128435 0 0 1 0 2 BNIP3L chr8:26265619 5'GT 26265619 Upstream 24bp
chr2 31484461 31484461 1 + T C LIHC 31484458 + 31484438 31484478 41 TCTGAAGAAGGAGATGCCCTCGGTGTTCGGGAAGGACAACA TCTGAAGAAGGAGATGCCCTCGGCGTTCGGGAAGGACAACA < 41bp 0.574233863058808 0.77697075077099 0.7033211 0.87944853 prediction 0.405473775424365 Functional Gain - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31484458 chr2:31484461 nonsynonymous SNV 0.989 2 24 hm5C_associated_SNPs_128436 0 0 0 0 1 EHD3 chr2:31484415 3'AG 31484415 Downstream 47bp
chr16 56686928 56686928 1 + A G STAD 56686925 + 56686905 56686945 41 CGTGGGCTGTGCCAAGTGTGCCCAGGGCTGTGTCTGCAAAG CGTGGGCTGTGCCAAGTGTGCCCGGGGCTGTGTCTGCAAAG < 41bp 0.62155784505228 0.824294016172169 0.0617868 0.24893713 prediction 0.405472342239777 Functional Gain - MT1B ENSG00000169688 CDS Human protein_coding chr16:56686925 chr16:56686928 nonsynonymous SNV 0.959 1 24 hm5C_associated_SNPs_128439 0 0 0 0 1 MT1B chr16:56686886 3'AG 56686886 Downstream 43bp
chr20 33508826 33508826 1 + A G rs10485507 33508823 + 33508803 33508843 41 GGTCAGTTTGAGGGGATTCCCACATATCCGGACGTGAACCG GGTCAGTTTGAGGGGATTCCCACGTATCCGGACGTGAACCG < 41bp 0.600211046151892 0.802947198442482 0.6105461 0.31273967 prediction 0.40547230458118 Functional Gain - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33508823 chr20:33508826 synonymous SNV . 0 24 hm5C_associated_SNPs_128440 0 0 1 0 1 ACSS2 chr20:33508809 3'AG 33508809 Downstream 18bp
chrX 86919826 86919826 1 + T G STAD 86919823 + 86919803 86919843 41 TCTGAGTGTTCCTCGAGATGCTGTTGCTGTGTGCCCTCTTG TCTGAGTGTTCCTCGAGATGCTGGTGCTGTGTGCCCTCTTG < 41bp 0.309805765850587 0.702735151420998 0.021080613 0.1812183 prediction 0.405470302841996 Functional Gain - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86919823 chrX:86919826 nonsynonymous SNV 0.975 4 24 hm5C_associated_SNPs_128442 0 0 0 0 1 KLHL4 chrX:86919764 3'AG 86919764 Downstream 63bp
chr4 48027184 48027184 1 + T C GBM 48027182 + 48027162 48027202 41 TCTCCTGTGCTCTACACGGACCTGAATTACAGCATAAACAA TCTCCTGTGCTCTACACGGACCCGAATTACAGCATAAACAA < 41bp 0.411562196431711 0.702730089436004 0.04153359 0.03469935 prediction 0.405460178872008 Functional Gain - NIPAL1 ENSG00000163293 CDS Human protein_coding chr4:48027182 chr4:48027184 nonsynonymous SNV 0.903 0 23 hm5C_associated_SNPs_128444 0 0 1 0 1 NIPAL1 chr4:48027085 3'AG 48027085 Downstream 100bp
chr15 86838559 86838559 1 + C A LUAD 86838555 + 86838535 86838575 41 TCCGGCAAGATGTTCTCTGCCAGACGCTGGGAGGGAATCCG TCCGGCAAGATGTTCTCTGCCAGAAGCTGGGAGGGAATCCG < 41bp 0.325944432849755 0.70272892106175 0.48700824 0.43211558 prediction 0.4054578421235 Functional Gain - AGBL1 ENSG00000166748 CDS Human other chr15:86838555 chr15:86838559 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_128445 0 0 0 0 2 AGBL1 chr15:86838486 3'AG 86838486 Downstream 74bp
chr15 86838559 86838559 1 + C A LUAD 86838555 + 86838535 86838575 41 TCCGGCAAGATGTTCTCTGCCAGACGCTGGGAGGGAATCCG TCCGGCAAGATGTTCTCTGCCAGAAGCTGGGAGGGAATCCG < 41bp 0.325944432849755 0.70272892106175 0.48700824 0.43211558 prediction 0.4054578421235 Functional Gain - AGBL1 ENSG00000166748 CDS Human other chr15:86838555 chr15:86838559 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_128445 0 0 0 0 2 AGBL1 chr15:86838639 5'GT 86838639 Upstream 81bp
chr1 204380314 204380314 1 + C A KIRC 204380313 + 204380293 204380333 41 TTAGCACCTTCTGAAGCAATCCGGGGAGCGGCGCAAGGAGC TTAGCACCTTCTGAAGCAATCAGGGGAGCGGCGCAAGGAGC < 41bp 0.644353543983519 0.847081999888935 0.9120127 0.9323112 prediction 0.405456911810833 Functional Gain - PPP1R15B ENSG00000158615 CDS Human protein_coding chr1:204380313 chr1:204380314 stopgain 0.099 0 22 hm5C_associated_SNPs_128446 0 0 0 0 1 PPP1R15B chr1:204380398 5'GT 204380398 Upstream 85bp
chr17 12016635 12016635 1 + T C KIRP 12016632 + 12016612 12016652 41 ATCAGTGGACAGCTTGTGGACTCTATTGCCAAGACAAGAGA ATCAGTGGACAGCTTGTGGACTCCATTGCCAAGACAAGAGA < 41bp 0.616310512696993 0.819028379309438 0.8205379 0.9460568 prediction 0.40543573322489 Functional Gain - MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12016632 chr17:12016635 synonymous SNV . 0 24 hm5C_associated_SNPs_128448 0 0 1 0 2 MAP2K4 chr17:12016550 3'AG 12016550 Downstream 86bp
chr17 12016635 12016635 1 + T C KIRP 12016632 + 12016612 12016652 41 ATCAGTGGACAGCTTGTGGACTCTATTGCCAAGACAAGAGA ATCAGTGGACAGCTTGTGGACTCCATTGCCAAGACAAGAGA < 41bp 0.616310512696993 0.819028379309438 0.8205379 0.9460568 prediction 0.40543573322489 Functional Gain - MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12016632 chr17:12016635 synonymous SNV . 0 24 hm5C_associated_SNPs_128448 0 0 1 0 2 MAP2K4 chr17:12016677 5'GT 12016677 Upstream 43bp
chr1 150902504 150902504 1 + C T CESC 150902503 + 150902483 150902523 41 TCCAAGCTGGGACTACAATACCGGGACAGTAGCTCTGAGGA TCCAAGCTGGGACTACAATACTGGGACAGTAGCTCTGAGGA < 41bp 0.632995663508828 0.835709420664555 0.9265815 0.9100945 prediction 0.405427514311453 Functional Gain - SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150902503 chr1:150902504 nonsynonymous SNV 0.542 2 22 hm5C_associated_SNPs_128449 0 0 1 0 2 SETDB1 chr1:150902443 3'AG 150902443 Downstream 62bp
chr1 150902504 150902504 1 + C T CESC 150902503 + 150902483 150902523 41 TCCAAGCTGGGACTACAATACCGGGACAGTAGCTCTGAGGA TCCAAGCTGGGACTACAATACTGGGACAGTAGCTCTGAGGA < 41bp 0.632995663508828 0.835709420664555 0.9265815 0.9100945 prediction 0.405427514311453 Functional Gain - SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150902503 chr1:150902504 nonsynonymous SNV 0.542 2 22 hm5C_associated_SNPs_128449 0 0 1 0 2 SETDB1 chr1:150902594 5'GT 150902594 Upstream 91bp
chr1 47610366 47610366 1 + C T PRAD 47610365 + 47610345 47610385 41 CCCAAGCATCAGGAGAGGTGCCGGGAGGAGATCCATGGCCT CCCAAGCATCAGGAGAGGTGCTGGGAGGAGATCCATGGCCT < 41bp 0.603507076933953 0.806219010256317 0.4487235 0.36980164 prediction 0.405423866644728 Functional Gain - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47610365 chr1:47610366 nonsynonymous SNV 0.006 4 22 hm5C_associated_SNPs_128450 0 0 0 0 1 CYP4A22 chr1:47610412 5'GT 47610412 Upstream 47bp
chr5 132202694 132202694 1 + C T LUAD 132202693 + 132202673 132202713 41 GGAATCCCCAATGTTCTGCGCCGCATTCGGGAGTCTTTCTT GGAATCCCCAATGTTCTGCGCTGCATTCGGGAGTCTTTCTT < 41bp 0.61169481933363 0.814404565001744 0.10738817 0.19477186 prediction 0.405419491336227 Functional Gain - UQCRQ ENSG00000164405 CDS Human protein_coding chr5:132202693 chr5:132202694 nonsynonymous SNV 0.143 5 22 hm5C_associated_SNPs_128451 0 0 1 0 1 UQCRQ chr5:132202727 5'GT 132202727 Upstream 34bp
chr1 55523739 55523739 1 + C A OV 55523738 + 55523718 55523758 41 CCATGATGCTGTCTGCCGAGCCGGAGCTCACCCTGGCCGAG CCATGATGCTGTCTGCCGAGCAGGAGCTCACCCTGGCCGAG < 41bp 0.658042389851404 0.860750177067233 0.8817835 0.9046271 prediction 0.405415574431658 Functional Gain - PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55523738 chr1:55523739 nonsynonymous SNV 0.025 2 22 hm5C_associated_SNPs_128452 0 0 1 0 2 PCSK9 chr1:55523709 3'AG 55523709 Downstream 31bp
chr1 55523739 55523739 1 + C A OV 55523738 + 55523718 55523758 41 CCATGATGCTGTCTGCCGAGCCGGAGCTCACCCTGGCCGAG CCATGATGCTGTCTGCCGAGCAGGAGCTCACCCTGGCCGAG < 41bp 0.658042389851404 0.860750177067233 0.8817835 0.9046271 prediction 0.405415574431658 Functional Gain - PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55523738 chr1:55523739 nonsynonymous SNV 0.025 2 22 hm5C_associated_SNPs_128452 0 0 1 0 2 PCSK9 chr1:55523830 5'GT 55523830 Upstream 92bp
chr1 156566553 156566553 1 + A G rs192313748 156566550 + 156566530 156566570 41 GCTCTGGTTCATCAGGTCTTCACAGTGGACAAGTGCCAGTG GCTCTGGTTCATCAGGTCTTCACGGTGGACAAGTGCCAGTG < 41bp 0.589044177171307 0.791749166080239 0.29977298 0.8235215 prediction 0.405409977817865 Functional Gain - GPATCH4 ENSG00000160818 intronic Human protein_coding chr1:156566550 chr1:156566553 . . 0 24 hm5C_associated_SNPs_128455 0 0 0 0 1 GPATCH4 chr1:156566499 3'AG 156566499 Downstream 55bp
chr12 7480905 7480905 1 + C A SARC 7480901 + 7480881 7480921 41 AGGTGGAATTTGTTCAAGAACTCCCAAAGACAATCACTGGG AGGTGGAATTTGTTCAAGAACTCCAAAAGACAATCACTGGG < 41bp 0.269059077254617 0.702704468047165 0.103720635 0.958634 prediction 0.405408936094329 Functional Gain - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7480901 chr12:7480905 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_128456 0 0 0 0 1 ACSM4 chr12:7480883 3'AG 7480883 Downstream 23bp
chr12 108634267 108634267 1 + C T COAD 108634266 + 108634246 108634286 41 GCCCTCATGGCTGAGTTCAACCGCAAGTACGGCGGCCACAT GCCCTCATGGCTGAGTTCAACTGCAAGTACGGCGGCCACAT < 41bp 0.646095536553856 0.848797099126152 0.35580772 0.32788363 prediction 0.405403125144593 Functional Gain - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108634266 chr12:108634267 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_128457 0 0 0 0 1 WSCD2 chr12:108634321 5'GT 108634321 Upstream 55bp
chr15 42108791 42108791 1 + A G UCEC 42108788 + 42108768 42108808 41 TTCAGTCCCTGAGTGAGATGCTGAAGGTGGAGGCCCATGAC TTCAGTCCCTGAGTGAGATGCTGGAGGTGGAGGCCCATGAC < 41bp 0.511261866038296 0.713963414386164 0.8291439 0.883195 prediction 0.405403096695735 Functional Gain - MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42108788 chr15:42108791 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_128458 0 0 1 0 1 MAPKBP1 chr15:42108848 5'GT 42108848 Upstream 58bp
chr12 58139594 58139594 1 + C A LGG 58139593 + 58139573 58139613 41 CTGGGTCTGGTGTCCAGCATCCACATCATCGGCGGAGTCAT CTGGGTCTGGTGTCCAGCATCAACATCATCGGCGGAGTCAT < 41bp 0.641776344061522 0.844476803752938 0.107542485 0.06342319 prediction 0.405400919382833 Functional Gain - TSPAN31 ENSG00000135452 CDS Human protein_coding chr12:58139593 chr12:58139594 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_128459 0 0 1 0 2 TSPAN31 chr12:58139528 3'AG 58139528 Downstream 67bp
chr12 58139594 58139594 1 + C A LGG 58139593 + 58139573 58139613 41 CTGGGTCTGGTGTCCAGCATCCACATCATCGGCGGAGTCAT CTGGGTCTGGTGTCCAGCATCAACATCATCGGCGGAGTCAT < 41bp 0.641776344061522 0.844476803752938 0.107542485 0.06342319 prediction 0.405400919382833 Functional Gain - TSPAN31 ENSG00000135452 CDS Human protein_coding chr12:58139593 chr12:58139594 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_128459 0 0 1 0 2 TSPAN31 chr12:58139656 5'GT 58139656 Upstream 63bp
chr17 42800312 42800312 1 + C A rs62636632 42800311 + 42800291 42800331 41 TGCCAGGAAGCATCCCTTTTCCGGAAAGTCCTTTTACTTGG TGCCAGGAAGCATCCCTTTTCAGGAAAGTCCTTTTACTTGG < 41bp 0.617692046181064 0.82039064229582 0.26705378 0.8672745 prediction 0.405397192229511 Functional Gain - DBF4B ENSG00000161692 CDS Human protein_coding chr17:42800311 chr17:42800312 synonymous SNV . 0 22 hm5C_associated_SNPs_128461 0 0 1 0 2 DBF4B chr17:42800248 3'AG 42800248 Downstream 65bp
chr17 42800312 42800312 1 + C A rs62636632 42800311 + 42800291 42800331 41 TGCCAGGAAGCATCCCTTTTCCGGAAAGTCCTTTTACTTGG TGCCAGGAAGCATCCCTTTTCAGGAAAGTCCTTTTACTTGG < 41bp 0.617692046181064 0.82039064229582 0.26705378 0.8672745 prediction 0.405397192229511 Functional Gain - DBF4B ENSG00000161692 CDS Human protein_coding chr17:42800311 chr17:42800312 synonymous SNV . 0 22 hm5C_associated_SNPs_128461 0 0 1 0 2 DBF4B chr17:42800390 5'GT 42800390 Upstream 79bp
chr10 99190370 99190370 1 + C A UCEC 99190369 + 99190349 99190389 41 CCTATGATGTCCCACCACCTCCGATGGAGCCCGACCATCCT CCTATGATGTCCCACCACCTCAGATGGAGCCCGACCATCCT < 41bp 0.424038737462618 0.702695848128886 0.128696 0.42705208 prediction 0.405391696257772 Functional Gain - PGAM1 ENSG00000171314 CDS Human protein_coding chr10:99190369 chr10:99190370 nonsynonymous SNV 0.040 2 22 hm5C_associated_SNPs_128463 0 0 0 0 1 PGAM1 chr10:99190410 5'GT 99190410 Upstream 41bp
chr15 76484365 76484365 1 + C A rs202140844 76484364 + 76484344 76484384 41 GCAGGACCTGGACCTGGCTGCCGAGCGCGAAGCGGCGCTCC GCAGGACCTGGACCTGGCTGCAGAGCGCGAAGCGGCGCTCC < 41bp 0.641789465581546 0.844484963687672 0.78774774 0.8403834 prediction 0.405390996212251 Functional Gain - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76484364 chr15:76484365 synonymous SNV . 0 22 hm5C_associated_SNPs_128465 0 0 0 0 1 TMEM266 chr15:76484309 3'AG 76484309 Downstream 57bp
chr12 133196313 133196313 1 + C T BLCA 133196312 + 133196292 133196332 41 AGGGTCGAGGCCACCCACTCCCAGACCCAGGGAACCTGCCC AGGGTCGAGGCCACCCACTCCTAGACCCAGGGAACCTGCCC < 41bp 0.617912941020754 0.820601153550691 0.2918306 0.2946725 prediction 0.405376425059874 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133196312 chr12:133196313 stopgain 0.271 1 22 hm5C_associated_SNPs_128467 0 0 0 0 2 P2RX2 chr12:133196265 3'AG 133196265 Downstream 49bp
chr12 133196313 133196313 1 + C T BLCA 133196312 + 133196292 133196332 41 AGGGTCGAGGCCACCCACTCCCAGACCCAGGGAACCTGCCC AGGGTCGAGGCCACCCACTCCTAGACCCAGGGAACCTGCCC < 41bp 0.617912941020754 0.820601153550691 0.2918306 0.2946725 prediction 0.405376425059874 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133196312 chr12:133196313 stopgain 0.271 1 22 hm5C_associated_SNPs_128467 0 0 0 0 2 P2RX2 chr12:133196336 5'GT 133196336 Upstream 24bp
chrX 77378799 77378799 1 + T C COAD 77378796 + 77378776 77378816 41 ACCTTGCCTGTTGACTTTGTCACTGCTGACAAGTTTGATGA ACCTTGCCTGTTGACTTTGTCACCGCTGACAAGTTTGATGA < 41bp 0.478727490502122 0.702686356415055 0.34515518 0.3950351 prediction 0.40537271283011 Functional Gain - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378796 chrX:77378799 synonymous SNV . 0 24 hm5C_associated_SNPs_128468 0 0 1 4 1 PGK1 chrX:77378871 5'GT 77378871 Upstream 73bp
chr1 41289869 41289869 1 + C A rs199809248 41289865 + 41289845 41289885 41 CCGGTACCCGACGGAGCACCCTCCCGTTACCCGCCCGTTGC CCGGTACCCGACGGAGCACCCTCCAGTTACCCGCCCGTTGC < 41bp 0.739259280451331 0.941944819169599 0.16208583 0.9396714 prediction 0.405371077436537 Functional Gain - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41289865 chr1:41289869 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_128469 0 0 0 0 1 KCNQ4 chr1:41289930 5'GT 41289930 Upstream 62bp
chr4 177073044 177073044 1 + A G UCEC 177073041 + 177073021 177073061 41 TACCTGCTAAAGAGGAAAGACTGAAGGAAGCTGCTGAAATC TACCTGCTAAAGAGGAAAGACTGGAGGAAGCTGCTGAAATC < 41bp 0.532775085988167 0.735456547850642 0.2512057 0.33923542 prediction 0.405362923724951 Functional Gain - WDR17 ENSG00000150627 CDS Human protein_coding chr4:177073041 chr4:177073044 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_128474 0 0 0 0 2 WDR17 chr4:177072963 3'AG 177072963 Downstream 82bp
chr4 177073044 177073044 1 + A G UCEC 177073041 + 177073021 177073061 41 TACCTGCTAAAGAGGAAAGACTGAAGGAAGCTGCTGAAATC TACCTGCTAAAGAGGAAAGACTGGAGGAAGCTGCTGAAATC < 41bp 0.532775085988167 0.735456547850642 0.2512057 0.33923542 prediction 0.405362923724951 Functional Gain - WDR17 ENSG00000150627 CDS Human protein_coding chr4:177073041 chr4:177073044 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_128474 0 0 0 0 2 WDR17 chr4:177073118 5'GT 177073118 Upstream 75bp
chr9 139888279 139888279 1 + C T rs563750403 139888278 + 139888258 139888298 41 AGGTGCAGCACAAGCGTGGCCCCGCGGGGAGTCCGCCTATG AGGTGCAGCACAAGCGTGGCCTCGCGGGGAGTCCGCCTATG < 41bp 0.553801796623323 0.75647887261199 0.31233075 0.3463232 prediction 0.405354151977335 Functional Gain - C9orf142 ENSG00000148362 UTR3 Human protein_coding chr9:139888278 chr9:139888279 . . 0 22 hm5C_associated_SNPs_128476 0 0 1 0 1 C9orf142 chr9:139888218 3'AG 139888218 Downstream 62bp
chr6 71298383 71298383 1 + C T UCEC 71298382 + 71298362 71298402 41 CCCAGGGGCCCAGAACCTACCCGATATGGAGATTGGGAACG CCCAGGGGCCCAGAACCTACCTGATATGGAGATTGGGAACG < 41bp 0.464852128432484 0.702675353030058 0.07250205 0.08096668 prediction 0.405350706060116 Functional Gain - SDHAF4 ENSG00000154079 CDS Human protein_coding chr6:71298382 chr6:71298383 stopgain 0.998 1 22 hm5C_associated_SNPs_128478 0 0 1 0 1 SDHAF4 chr6:71298318 3'AG 71298318 Downstream 66bp
chr19 41825558 41825558 1 + C T SKCM 41825557 + 41825537 41825577 41 GTACATCGGGCAGTATCTCACCCAGGAGGAGCTCAGTGCCC GTACATCGGGCAGTATCTCACTCAGGAGGAGCTCAGTGCCC < 41bp 0.63554006302958 0.838212016553492 0.3579377 0.14717501 prediction 0.405343907047824 Functional Gain - CCDC97 ENSG00000142039 CDS Human protein_coding chr19:41825557 chr19:41825558 synonymous SNV . 0 22 hm5C_associated_SNPs_128479 0 0 0 0 1 CCDC97 chr19:41825479 3'AG 41825479 Downstream 80bp
chr1 1414111 1414111 1 + C G rs202031472 1414110 + 1414090 1414130 41 AAGACCCTGAGCGAGGAGACCCGGCAGCACCAGGCCGTAAG AAGACCCTGAGCGAGGAGACCGGGCAGCACCAGGCCGTAAG < 41bp 0.383069948080833 0.702670865473683 0.8151759 0.8759804 prediction 0.405341730947365 Functional Gain - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1414110 chr1:1414111 nonsynonymous SNV 0.902 3 22 hm5C_associated_SNPs_128480 0 0 0 0 2 ATAD3B chr1:1414024 3'AG 1414024 Downstream 88bp
chr1 1414111 1414111 1 + C G rs202031472 1414110 + 1414090 1414130 41 AAGACCCTGAGCGAGGAGACCCGGCAGCACCAGGCCGTAAG AAGACCCTGAGCGAGGAGACCGGGCAGCACCAGGCCGTAAG < 41bp 0.383069948080833 0.702670865473683 0.8151759 0.8759804 prediction 0.405341730947365 Functional Gain - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1414110 chr1:1414111 nonsynonymous SNV 0.902 3 22 hm5C_associated_SNPs_128480 0 0 0 0 2 ATAD3B chr1:1414125 5'GT 1414125 Upstream 15bp
chr2 27258152 27258152 1 + T C GBM 27258150 + 27258130 27258170 41 CCACGCTGAGCCAGCATACTCATGGTAAGTCCTTCCAGCTT CCACGCTGAGCCAGCATACTCACGGTAAGTCCTTCCAGCTT < 41bp 0.651031505630218 0.853700011258225 0.9167681 0.82741743 prediction 0.405337011256014 Functional Gain - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27258150 chr2:27258152 synonymous SNV . 0 23 hm5C_associated_SNPs_128481 0 0 1 1 1 TMEM214 chr2:27258153 5'GT 27258153 Upstream 2bp
chr18 32438296 32438296 1 + C G LUSC 32438292 + 32438272 32438312 41 GACTTCGGCTAGAGCATGAACAAGCTTCTCAGCCCACGCCA GACTTCGGCTAGAGCATGAACAAGGTTCTCAGCCCACGCCA < 41bp 0.644366112565855 0.847032529686425 0.27792224 0.884526 prediction 0.40533283424114 Functional Gain - DTNA ENSG00000134769 CDS Human protein_coding chr18:32438292 chr18:32438296 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_128482 0 0 1 0 1 DTNA chr18:32438249 3'AG 32438249 Downstream 48bp
chr7 5085976 5085976 1 + C G rs374214716 5085975 + 5085955 5085995 41 CGCGCGCCAGCGACAGCAGCCCCGCCCCGGCCTCTCGGGAG CGCGCGCCAGCGACAGCAGCCGCGCCCCGGCCTCTCGGGAG < 41bp 0.465356556219889 0.702664162121979 0.348284 0.48161164 prediction 0.405328324243958 Functional Gain - RBAK ENSG00000146587 UTR5 Human protein_coding chr7:5085975 chr7:5085976 . . 0 22 hm5C_associated_SNPs_128485 0 0 1 0 1 RBAK chr7:5085886 3'AG 5085886 Downstream 91bp
chr9 35793020 35793020 1 + A G LUAD 35793017 + 35792997 35793037 41 GTGCAGCACCAGGTGTATGCCCGAGAGCCAGGGGGCCCCGA GTGCAGCACCAGGTGTATGCCCGGGAGCCAGGGGGCCCCGA < 41bp 0.625717168173331 0.828366803234354 0.4994421 0.89688337 prediction 0.405299270122045 Functional Gain - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35793017 chr9:35793020 synonymous SNV . 0 24 hm5C_associated_SNPs_128489 0 0 0 0 1 NPR2 chr9:35793072 5'GT 35793072 Upstream 53bp
chr20 36954720 36954720 1 + C A HNSC 36954719 + 36954699 36954739 41 GATCCATGTCTCAGCCTCCACCCCGCCACACCTGTCTGTGC GATCCATGTCTCAGCCTCCACACCGCCACACCTGTCTGTGC < 41bp 0.435419062838393 0.702640187262997 0.019596964 0.005676061 prediction 0.405280374525994 Functional Gain - BPI ENSG00000101425 CDS Human protein_coding chr20:36954719 chr20:36954720 synonymous SNV . 0 22 hm5C_associated_SNPs_128491 0 0 0 0 1 BPI chr20:36954667 3'AG 36954667 Downstream 54bp
chr1 43778833 43778833 1 + C G LUAD 43778829 + 43778809 43778849 41 CTCCAGCCCCCCGACACCTCCACGCCCAGGCCCTCTCAGAC CTCCAGCCCCCCGACACCTCCACGGCCAGGCCCTCTCAGAC < 41bp 0.40174175116882 0.702637967294798 0.27220336 0.37871134 prediction 0.405275934589596 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43778829 chr1:43778833 nonsynonymous SNV 0.781 3 25 hm5C_associated_SNPs_128492 0 0 0 0 1 TIE1 chr1:43778806 3'AG 43778806 Downstream 28bp
chr10 115661517 115661517 1 + A G SKCM 115661514 + 115661494 115661534 41 TCCTCACAAGGCAGGTTTTGCCCAACCTTCAGGCCTTTCCT TCCTCACAAGGCAGGTTTTGCCCGACCTTCAGGCCTTTCCT < 41bp 0.46135262865556 0.702637284055499 0.084074706 0.30246246 prediction 0.405274568110997 Functional Gain - NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115661514 chr10:115661517 nonsynonymous SNV 0.902 5 24 hm5C_associated_SNPs_128495 0 0 1 0 1 NHLRC2 chr10:115661425 3'AG 115661425 Downstream 93bp
chr16 57496641 57496641 1 + C T BLCA 57496640 + 57496620 57496660 41 GGTGGCCCCTGGGCGAGATGCCGTACGCCAACCAGCCTACC GGTGGCCCCTGGGCGAGATGCTGTACGCCAACCAGCCTACC < 41bp 0.575081330514101 0.777717675693325 0.50902665 0.76479656 prediction 0.405272690358449 Functional Gain - POLR2C ENSG00000102978 CDS Human protein_coding chr16:57496640 chr16:57496641 nonsynonymous SNV 0.975 4 22 hm5C_associated_SNPs_128496 0 0 1 0 1 POLR2C chr16:57496722 5'GT 57496722 Upstream 82bp
chr7 72754658 72754658 1 + C T rs201318712 72754657 + 72754637 72754677 41 CAGGCCCTGTTGCTTCTGCGCCGGCGATCAGCACCCCCTGA CAGGCCCTGTTGCTTCTGCGCTGGCGATCAGCACCCCCTGA < 41bp 0.47128317191711 0.702632325460385 0.8185943 0.3066877 prediction 0.40526465092077 Functional Gain - FKBP6 ENSG00000077800 CDS Human protein_coding chr7:72754657 chr7:72754658 nonsynonymous SNV 0.001 4 22 hm5C_associated_SNPs_128497 0 0 0 0 1 FKBP6 chr7:72754640 3'AG 72754640 Downstream 19bp
chr14 50802198 50802198 1 + T G rs11570854 50802194 + 50802174 50802214 41 CAGCCTGCTGTTTAAACAGTCTCCTGTGGGGCATTCGTCAA CAGCCTGCTGTTTAAACAGTCTCCGGTGGGGCATTCGTCAA < 41bp 0.497598376134956 0.702626353540214 0.1592431 0.12721798 prediction 0.405252707080428 Functional Gain - CDKL1 ENSG00000125375 CDS Human protein_coding chr14:50802194 chr14:50802198 synonymous SNV . 0 25 hm5C_associated_SNPs_128498 0 0 0 0 1 CDKL1 chr14:50802177 3'AG 50802177 Downstream 22bp
chr19 58262191 58262191 1 + C T rs149749249 58262190 + 58262170 58262210 41 AGATGTGGCTGTGAACTTTTCCCAGGAGGAATGGAGTCTCC AGATGTGGCTGTGAACTTTTCTCAGGAGGAATGGAGTCTCC < 41bp 0.447317088420486 0.702624694185128 0.09901634 0.024009168 prediction 0.405249388370257 Functional Gain - ZNF776 ENSG00000152443;ENSG00000269026 CDS Human other chr19:58262190 chr19:58262191 synonymous SNV . 0 22 hm5C_associated_SNPs_128499 0 0 1 0 2 ZNF776 chr19:58262153 3'AG 58262153 Downstream 39bp
chr19 58262191 58262191 1 + C T rs149749249 58262190 + 58262170 58262210 41 AGATGTGGCTGTGAACTTTTCCCAGGAGGAATGGAGTCTCC AGATGTGGCTGTGAACTTTTCTCAGGAGGAATGGAGTCTCC < 41bp 0.447317088420486 0.702624694185128 0.09901634 0.024009168 prediction 0.405249388370257 Functional Gain - ZNF776 ENSG00000152443;ENSG00000269026 CDS Human other chr19:58262190 chr19:58262191 synonymous SNV . 0 22 hm5C_associated_SNPs_128499 0 0 1 0 2 ZNF776 chr19:58262279 5'GT 58262279 Upstream 89bp
chr1 160099970 160099970 1 + C T STAD 160099969 + 160099949 160099989 41 GCCCCAGAGCGCATTCTGGACCGGTGCTCCACCATCCTGGT GCCCCAGAGCGCATTCTGGACTGGTGCTCCACCATCCTGGT < 41bp 0.44614952348096 0.702623130477695 0.5300332 0.16782984 prediction 0.40524626095539 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160099969 chr1:160099970 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_128501 1 0 0 0 1 ATP1A2 chr1:160099892 3'AG 160099892 Downstream 79bp
chr17 43906643 43906643 1 + C T SKCM 43906642 + 43906622 43906662 41 CTACCTGGGCCACTGTATCTCCCTGGTGGCCCTCCTGGTGG CTACCTGGGCCACTGTATCTCTCTGGTGGCCCTCCTGGTGG < 41bp 0.513647303464961 0.71626668537768 0.14154503 0.22120988 prediction 0.405238763825437 Functional Gain - CRHR1;LINC02210-CRHR1 ENSG00000120088 CDS Human protein_coding chr17:43906642 chr17:43906643 synonymous SNV 1.000 0 22 hm5C_associated_SNPs_128503 0 0 0 0 2 CRHR1;LINC02210-CRHR1 chr17:43906581 3'AG 43906581 Downstream 63bp
chr17 43906643 43906643 1 + C T SKCM 43906642 + 43906622 43906662 41 CTACCTGGGCCACTGTATCTCCCTGGTGGCCCTCCTGGTGG CTACCTGGGCCACTGTATCTCTCTGGTGGCCCTCCTGGTGG < 41bp 0.513647303464961 0.71626668537768 0.14154503 0.22120988 prediction 0.405238763825437 Functional Gain - CRHR1;LINC02210-CRHR1 ENSG00000120088 CDS Human protein_coding chr17:43906642 chr17:43906643 synonymous SNV 1.000 0 22 hm5C_associated_SNPs_128503 0 0 0 0 2 CRHR1;LINC02210-CRHR1 chr17:43906687 5'GT 43906687 Upstream 45bp
chr16 227309 227309 1 + C A COAD 227308 + 227288 227328 41 AGCCACTGCCTGCTGGTGACCCTGGCCGCCCACCTCCCCGC AGCCACTGCCTGCTGGTGACCATGGCCGCCCACCTCCCCGC < 41bp 0.635099291684661 0.837712005802152 0.17836651 0.49162433 prediction 0.405225428234981 Functional Gain - HBA1 ENSG00000206172 CDS Human protein_coding chr16:227308 chr16:227309 nonsynonymous SNV 0.926 2 22 hm5C_associated_SNPs_128505 0 0 0 0 1 HBA1 chr16:227282 3'AG 227282 Downstream 28bp
chr15 48413344 48413344 1 + C A LUAD 48413340 + 48413320 48413360 41 CTCTCAGGGACCTCCCTGCCCCAACGTCTCCCAAGGGCCAC CTCTCAGGGACCTCCCTGCCCCAAAGTCTCCCAAGGGCCAC < 41bp 0.314048203712314 0.702610032834031 0.07400328 0.10219765 prediction 0.405220065668062 Functional Gain - SLC24A5 ENSG00000188467 CDS Human protein_coding chr15:48413340 chr15:48413344 nonsynonymous SNV 0.670 0 25 hm5C_associated_SNPs_128506 0 0 0 0 1 SLC24A5 chr15:48413362 5'GT 48413362 Upstream 19bp
chr20 33122537 33122537 1 + C T SKCM 33122536 + 33122516 33122556 41 GCACCGTGCGTGACATCGACCCCCAGAACGATCTCACCTTC GCACCGTGCGTGACATCGACCTCCAGAACGATCTCACCTTC < 41bp 0.637875979802301 0.840483275166075 0.009237021 0.28001994 prediction 0.405214590727549 Functional Gain - DYNLRB1 ENSG00000125971 CDS Human protein_coding chr20:33122536 chr20:33122537 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_128508 0 0 1 0 1 DYNLRB1 chr20:33122599 5'GT 33122599 Upstream 63bp
chr1 1417600 1417600 1 + C T SARC 1417599 + 1417579 1417619 41 GGCCCGGGCGCGCGCCAAGGCCGAGCGGGAGAATGCAGACA GGCCCGGGCGCGCGCCAAGGCTGAGCGGGAGAATGCAGACA < 41bp 0.454743743827471 0.702597221796289 0.42182493 0.15612781 prediction 0.405194443592577 Functional Gain - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1417599 chr1:1417600 synonymous SNV . 0 22 hm5C_associated_SNPs_128512 0 0 1 0 2 ATAD3B chr1:1417518 3'AG 1417518 Downstream 83bp
chr1 1417600 1417600 1 + C T SARC 1417599 + 1417579 1417619 41 GGCCCGGGCGCGCGCCAAGGCCGAGCGGGAGAATGCAGACA GGCCCGGGCGCGCGCCAAGGCTGAGCGGGAGAATGCAGACA < 41bp 0.454743743827471 0.702597221796289 0.42182493 0.15612781 prediction 0.405194443592577 Functional Gain - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1417599 chr1:1417600 synonymous SNV . 0 22 hm5C_associated_SNPs_128512 0 0 1 0 2 ATAD3B chr1:1417683 5'GT 1417683 Upstream 84bp
chr20 58564203 58564203 1 + C T SKCM 58564202 + 58564182 58564222 41 GAACTTTTAATGCCATGGATCCAGACAGCCAGATAAGGTGA GAACTTTTAATGCCATGGATCTAGACAGCCAGATAAGGTGA < 41bp 0.453227669187572 0.702594227620365 0.23428366 0.09887484 prediction 0.405188455240731 Functional Gain - CDH26 ENSG00000124215 CDS Human protein_coding chr20:58564202 chr20:58564203 nonsynonymous SNV 0.029 3 22 hm5C_associated_SNPs_128513 0 0 0 0 1 CDH26 chr20:58564218 5'GT 58564218 Upstream 16bp
chr3 32915375 32915375 1 + T C UCEC 32915373 + 32915353 32915393 41 GTGAGTGCACAATGGGCCGGCATGGGGGCCACAGCTTCATC GTGAGTGCACAATGGGCCGGCACGGGGGCCACAGCTTCATC < 41bp 0.430176937031285 0.702580341562943 0.8754001 0.8118422 prediction 0.405160683125886 Functional Gain - TRIM71 ENSG00000206557 CDS Human protein_coding chr3:32915373 chr3:32915375 synonymous SNV . 0 23 hm5C_associated_SNPs_128515 0 0 0 0 1 TRIM71 chr3:32915310 3'AG 32915310 Downstream 66bp
chr17 28958829 28958829 1 + C T rs113224396 28958828 + 28958808 28958848 41 TTCATGAAGATGTTACAAGCCCGGAAGCAGCACATGAGCAC TTCATGAAGATGTTACAAGCCTGGAAGCAGCACATGAGCAC < 41bp 0.582535816995791 0.785114460127959 0.113461435 0.10615268 prediction 0.405157286264336 Functional Gain - LOC107133515 ENSG00000214719;ENSG00000250462 ncRNA_exonic Human other chr17:28958828 chr17:28958829 . . 0 22 hm5C_associated_SNPs_128516 0 0 1 0 1 LOC107133515 chr17:28958773 3'AG 28958773 Downstream 57bp
chr1 46035621 46035621 1 + C T rs142530083 46035620 + 46035600 46035640 41 CTCTGTACCCCTTTAATGACCCGTACTGAGACCACAGCTTC CTCTGTACCCCTTTAATGACCTGTACTGAGACCACAGCTTC < 41bp 0.453922785309698 0.702576804837234 0.074070364 0.18282002 prediction 0.405153609674467 Functional Gain - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46035620 chr1:46035621 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_128518 0 0 1 0 1 AKR1A1 chr1:46035563 3'AG 46035563 Downstream 59bp
chr13 114469114 114469114 1 + T C STAD 114469112 + 114469092 114469132 41 GCTTTCGAGGAGGAAGAAGACGTCGCTCTGGTTTGTGGGGT GCTTTCGAGGAGGAAGAAGACGCCGCTCTGGTTTGTGGGGT < 41bp 0.646518279853205 0.849094371678991 0.28871337 0.16161495 prediction 0.405152183651573 Functional Gain - TMEM255B ENSG00000184497 CDS Human protein_coding chr13:114469112 chr13:114469114 nonsynonymous SNV 0.258 3 23 hm5C_associated_SNPs_128520 0 0 0 0 1 TMEM255B chr13:114469088 3'AG 114469088 Downstream 27bp
chr14 23314992 23314992 1 + C T LUSC 23314991 + 23314971 23315011 41 TGAAGGTAGAACCGGGCTACCCCAAGTCAGCCCTGAGGGAC TGAAGGTAGAACCGGGCTACCTCAAGTCAGCCCTGAGGGAC < 41bp 0.648651658047559 0.851226368472321 0.2536533 0.762612 prediction 0.405149420849525 Functional Gain - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23314991 chr14:23314992 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_128522 0 0 1 0 1 MMP14 chr14:23314917 3'AG 23314917 Downstream 76bp
chr11 8111748 8111748 1 + C T SKCM 8111747 + 8111727 8111767 41 GCCCCCCTGGTGGAGTCCTACCTCAGCAGCAGTGGCAGCAC GCCCCCCTGGTGGAGTCCTACTTCAGCAGCAGTGGCAGCAC < 41bp 0.421500866326598 0.702574464738121 0.08194795 0.16558334 prediction 0.405148929476242 Functional Gain - TUB ENSG00000166402 CDS Human protein_coding chr11:8111747 chr11:8111748 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_128523 0 0 1 0 1 TUB chr11:8111778 5'GT 8111778 Upstream 31bp
chr1 204095019 204095019 1 + A G UCEC 204095016 + 204094996 204095036 41 GGCCAGGTGCAGATGAGCTCCTCAGATGTCCTGTACCCTCG GGCCAGGTGCAGATGAGCTCCTCGGATGTCCTGTACCCTCG < 41bp 0.614994303039666 0.81756100942477 0.23870862 0.5045905 prediction 0.405133412770208 Functional Gain - SOX13 ENSG00000143842 CDS Human protein_coding chr1:204095016 chr1:204095019 synonymous SNV . 0 24 hm5C_associated_SNPs_128526 0 0 1 0 1 SOX13 chr1:204094986 3'AG 204094986 Downstream 34bp
chr10 50870825 50870825 1 + C A COAD 50870821 + 50870801 50870841 41 CAACCGGTTTGTCCTCTCCACTAGCCAGGTACGGCCCCGTG CAACCGGTTTGTCCTCTCCACTAGACAGGTACGGCCCCGTG < 41bp 0.282669966581148 0.702565874975086 0.030140638 0.11360592 prediction 0.405131749950172 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50870821 chr10:50870825 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_128527 0 0 0 0 1 CHAT chr10:50870828 5'GT 50870828 Upstream 4bp
chr5 145718791 145718791 1 + C A LUSC 145718790 + 145718770 145718810 41 GCCGAGTCTGTCTCCCAGCCCCGCAGGTACGTAGTGGAGCA GCCGAGTCTGTCTCCCAGCCCAGCAGGTACGTAGTGGAGCA < 41bp 0.627380837585047 0.829940036091571 0.1324729 0.18988252 prediction 0.40511839701305 Functional Gain - POU4F3 ENSG00000091009;ENSG00000091010 CDS Human other chr5:145718790 chr5:145718791 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_128529 0 0 0 0 1 POU4F3 chr5:145718795 5'GT 145718795 Upstream 5bp
chr7 92085780 92085780 1 + C T SKCM 92085779 + 92085759 92085799 41 GTCACGGTCATCACCATTTCCCACAGTTCCCACCAGACCAG GTCACGGTCATCACCATTTCCTACAGTTCCCACCAGACCAG < 41bp 0.643314018559139 0.845871780724251 0.04318446 0.07347229 prediction 0.405115524330224 Functional Gain - GATAD1 ENSG00000157259 CDS Human protein_coding chr7:92085779 chr7:92085780 synonymous SNV . 0 22 hm5C_associated_SNPs_128532 0 0 1 1 1 GATAD1 chr7:92085686 3'AG 92085686 Downstream 95bp
chr18 61465907 61465907 1 + T C UCEC 61465904 + 61465884 61465924 41 TGTAATGGTGCTGGTGAATGCTGTGTACTTCAAAGGCAAGT TGTAATGGTGCTGGTGAATGCTGCGTACTTCAAAGGCAAGT < 41bp 0.573791070865478 0.776345705471406 0.15446076 0.15392378 prediction 0.405109269211856 Functional Gain - SERPINB7 ENSG00000166396 CDS Human protein_coding chr18:61465904 chr18:61465907 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_128535 0 0 0 0 2 SERPINB7 chr18:61465838 3'AG 61465838 Downstream 70bp
chr18 61465907 61465907 1 + T C UCEC 61465904 + 61465884 61465924 41 TGTAATGGTGCTGGTGAATGCTGTGTACTTCAAAGGCAAGT TGTAATGGTGCTGGTGAATGCTGCGTACTTCAAAGGCAAGT < 41bp 0.573791070865478 0.776345705471406 0.15446076 0.15392378 prediction 0.405109269211856 Functional Gain - SERPINB7 ENSG00000166396 CDS Human protein_coding chr18:61465904 chr18:61465907 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_128535 0 0 0 0 2 SERPINB7 chr18:61465980 5'GT 61465980 Upstream 74bp
chr18 19100717 19100717 1 + T C rs17720074 19100714 + 19100694 19100734 41 AACTGTGAAGGGGTGTTTTTCAGTGGACTCCTTTTGTACCT AACTGTGAAGGGGTGTTTTTCAGCGGACTCCTTTTGTACCT < 41bp 0.535805555831725 0.738356829162894 0.92071724 0.9499912 prediction 0.405102546662337 Functional Gain - GREB1L ENSG00000141449 CDS Human protein_coding chr18:19100714 chr18:19100717 synonymous SNV . 0 24 hm5C_associated_SNPs_128537 0 0 1 0 2 GREB1L chr18:19100649 3'AG 19100649 Downstream 69bp
chr18 19100717 19100717 1 + T C rs17720074 19100714 + 19100694 19100734 41 AACTGTGAAGGGGTGTTTTTCAGTGGACTCCTTTTGTACCT AACTGTGAAGGGGTGTTTTTCAGCGGACTCCTTTTGTACCT < 41bp 0.535805555831725 0.738356829162894 0.92071724 0.9499912 prediction 0.405102546662337 Functional Gain - GREB1L ENSG00000141449 CDS Human protein_coding chr18:19100714 chr18:19100717 synonymous SNV . 0 24 hm5C_associated_SNPs_128537 0 0 1 0 2 GREB1L chr18:19100784 5'GT 19100784 Upstream 68bp
chr3 88199286 88199286 1 + C T ESCA 88199285 + 88199265 88199305 41 GGACAACGACGAGATCATGGCCCTATGCGACACTGTCACCA GGACAACGACGAGATCATGGCTCTATGCGACACTGTCACCA < 41bp 0.610394041113327 0.812938736741581 0.16139466 0.9514955 prediction 0.405089391256509 Functional Gain - C3orf38 ENSG00000179021 CDS Human protein_coding chr3:88199285 chr3:88199286 synonymous SNV . 0 22 hm5C_associated_SNPs_128538 0 0 1 0 1 C3orf38 chr3:88199335 5'GT 88199335 Upstream 50bp
chr17 61908926 61908926 1 + C A SKCM 61908925 + 61908905 61908945 41 AACCTGACCCGGGGGATCAACCTGAGAAAAATTGCTGAGCT AACCTGACCCGGGGGATCAACATGAGAAAAATTGCTGAGCT < 41bp 0.644726288852451 0.84726629742331 0.9168869 0.91511697 prediction 0.405080017141718 Functional Gain - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61908925 chr17:61908926 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_128543 0 0 1 0 2 PSMC5 chr17:61908866 3'AG 61908866 Downstream 61bp
chr17 61908926 61908926 1 + C A SKCM 61908925 + 61908905 61908945 41 AACCTGACCCGGGGGATCAACCTGAGAAAAATTGCTGAGCT AACCTGACCCGGGGGATCAACATGAGAAAAATTGCTGAGCT < 41bp 0.644726288852451 0.84726629742331 0.9168869 0.91511697 prediction 0.405080017141718 Functional Gain - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61908925 chr17:61908926 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_128543 0 0 1 0 2 PSMC5 chr17:61908976 5'GT 61908976 Upstream 51bp
chr2 103380833 103380833 1 + C T SKCM 103380832 + 103380812 103380852 41 GCACACATGCTTACCTGTCTCCGTACCCCTTCATGAGAGGC GCACACATGCTTACCTGTCTCTGTACCCCTTCATGAGAGGC < 41bp 0.435192415986479 0.702533176400708 0.2888279 0.090637505 prediction 0.405066352801416 Functional Gain - TMEM182 ENSG00000170417 CDS Human protein_coding chr2:103380832 chr2:103380833 nonsynonymous SNV 0.944 4 22 hm5C_associated_SNPs_128544 0 0 1 0 2 TMEM182 chr2:103380788 3'AG 103380788 Downstream 46bp
chr2 103380833 103380833 1 + C T SKCM 103380832 + 103380812 103380852 41 GCACACATGCTTACCTGTCTCCGTACCCCTTCATGAGAGGC GCACACATGCTTACCTGTCTCTGTACCCCTTCATGAGAGGC < 41bp 0.435192415986479 0.702533176400708 0.2888279 0.090637505 prediction 0.405066352801416 Functional Gain - TMEM182 ENSG00000170417 CDS Human protein_coding chr2:103380832 chr2:103380833 nonsynonymous SNV 0.944 4 22 hm5C_associated_SNPs_128544 0 0 1 0 2 TMEM182 chr2:103380886 5'GT 103380886 Upstream 54bp
chr17 80443439 80443439 1 + C A STAD 80443435 + 80443415 80443455 41 GGTGGTGTTACGCTTTGCTGCAGCCTATGGCTTTCGAAACA GGTGGTGTTACGCTTTGCTGCAGCATATGGCTTTCGAAACA < 41bp 0.297718362047749 0.702532215841334 0.13809645 0.14378083 prediction 0.405064431682669 Functional Gain - NARF ENSG00000141562 CDS Human protein_coding chr17:80443435 chr17:80443439 synonymous SNV . 0 25 hm5C_associated_SNPs_128545 0 0 1 1 2 NARF chr17:80443373 3'AG 80443373 Downstream 67bp
chr17 80443439 80443439 1 + C A STAD 80443435 + 80443415 80443455 41 GGTGGTGTTACGCTTTGCTGCAGCCTATGGCTTTCGAAACA GGTGGTGTTACGCTTTGCTGCAGCATATGGCTTTCGAAACA < 41bp 0.297718362047749 0.702532215841334 0.13809645 0.14378083 prediction 0.405064431682669 Functional Gain - NARF ENSG00000141562 CDS Human protein_coding chr17:80443435 chr17:80443439 synonymous SNV . 0 25 hm5C_associated_SNPs_128545 0 0 1 1 2 NARF chr17:80443530 5'GT 80443530 Upstream 92bp
chr11 85342820 85342820 1 + A G LUSC 85342817 + 85342797 85342837 41 AGACCAATGGTCATAGAAATCATAGAAAAAAATTTTGACTA AGACCAATGGTCATAGAAATCATGGAAAAAAATTTTGACTA < 41bp 0.488471107635719 0.702530007047693 0.22560564 0.3868621 prediction 0.405060014095386 Functional Gain - TMEM126B ENSG00000171204 CDS Human protein_coding chr11:85342817 chr11:85342820 nonsynonymous SNV 0.990 0 24 hm5C_associated_SNPs_128546 0 0 1 0 2 TMEM126B chr11:85342731 3'AG 85342731 Downstream 90bp
chr11 85342820 85342820 1 + A G LUSC 85342817 + 85342797 85342837 41 AGACCAATGGTCATAGAAATCATAGAAAAAAATTTTGACTA AGACCAATGGTCATAGAAATCATGGAAAAAAATTTTGACTA < 41bp 0.488471107635719 0.702530007047693 0.22560564 0.3868621 prediction 0.405060014095386 Functional Gain - TMEM126B ENSG00000171204 CDS Human protein_coding chr11:85342817 chr11:85342820 nonsynonymous SNV 0.990 0 24 hm5C_associated_SNPs_128546 0 0 1 0 2 TMEM126B chr11:85342852 5'GT 85342852 Upstream 33bp
chr10 85909908 85909908 1 + C T SKCM 85909907 + 85909887 85909927 41 TGGCATTGTGGGAGGCCTCTCCACTGTGGCCATGTGTGCGC TGGCATTGTGGGAGGCCTCTCTACTGTGGCCATGTGTGCGC < 41bp 0.647238581053612 0.849766571948372 0.077058315 0.06899688 prediction 0.405055981789519 Functional Gain - GHITM ENSG00000165678 CDS Human protein_coding chr10:85909907 chr10:85909908 synonymous SNV . 0 22 hm5C_associated_SNPs_128548 0 0 1 0 2 GHITM chr10:85909811 3'AG 85909811 Downstream 98bp
chr10 85909908 85909908 1 + C T SKCM 85909907 + 85909887 85909927 41 TGGCATTGTGGGAGGCCTCTCCACTGTGGCCATGTGTGCGC TGGCATTGTGGGAGGCCTCTCTACTGTGGCCATGTGTGCGC < 41bp 0.647238581053612 0.849766571948372 0.077058315 0.06899688 prediction 0.405055981789519 Functional Gain - GHITM ENSG00000165678 CDS Human protein_coding chr10:85909907 chr10:85909908 synonymous SNV . 0 22 hm5C_associated_SNPs_128548 0 0 1 0 2 GHITM chr10:85909999 5'GT 85909999 Upstream 92bp
chr3 112969628 112969628 1 + C T SKCM 112969627 + 112969607 112969647 41 GGGACGGTACCAGTGTGTGGCCCGGATGCCTGCGGGGGCTG GGGACGGTACCAGTGTGTGGCTCGGATGCCTGCGGGGGCTG < 41bp 0.468787043552535 0.702527820663629 0.3605426 0.41142315 prediction 0.405055641327257 Functional Gain - BOC ENSG00000144857 CDS Human protein_coding chr3:112969627 chr3:112969628 synonymous SNV . 0 22 hm5C_associated_SNPs_128549 0 0 1 0 1 BOC chr3:112969680 5'GT 112969680 Upstream 53bp
chr15 74622620 74622620 1 + C T rs538344642 74622619 + 74622599 74622639 41 AGCATCCTGGAAGGAGAGAACCGCATACTGAGGAGCCGCCT AGCATCCTGGAAGGAGAGAACTGCATACTGAGGAGCCGCCT < 41bp 0.641369469557461 0.843893916968358 0.7758815 0.45497248 prediction 0.405048894821793 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74622619 chr15:74622620 nonsynonymous SNV 0.393 1 22 hm5C_associated_SNPs_128552 0 0 0 0 2 CCDC33 chr15:74622530 3'AG 74622530 Downstream 91bp
chr15 74622620 74622620 1 + C T rs538344642 74622619 + 74622599 74622639 41 AGCATCCTGGAAGGAGAGAACCGCATACTGAGGAGCCGCCT AGCATCCTGGAAGGAGAGAACTGCATACTGAGGAGCCGCCT < 41bp 0.641369469557461 0.843893916968358 0.7758815 0.45497248 prediction 0.405048894821793 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74622619 chr15:74622620 nonsynonymous SNV 0.393 1 22 hm5C_associated_SNPs_128552 0 0 0 0 2 CCDC33 chr15:74622695 5'GT 74622695 Upstream 76bp
chr12 29614807 29614807 1 + C T rs12305672 29614806 + 29614786 29614826 41 CCTGGCAGAAATCTTTCTCTCCAGATGCTGCAAAGCCAGCA CCTGGCAGAAATCTTTCTCTCTAGATGCTGCAAAGCCAGCA < 41bp 0.635045244943654 0.837567767963558 0.9237194 0.24484402 prediction 0.405045046039809 Functional Gain - OVCH1 ENSG00000187950;ENSG00000257599 CDS Human antisense chr12:29614806 chr12:29614807 nonsynonymous SNV 0.113 4 22 hm5C_associated_SNPs_128554 0 0 0 0 2 OVCH1-AS1 chr12:29614729 3'AG 29614729 Downstream 79bp
chr12 29614807 29614807 1 + C T rs12305672 29614806 + 29614786 29614826 41 CCTGGCAGAAATCTTTCTCTCCAGATGCTGCAAAGCCAGCA CCTGGCAGAAATCTTTCTCTCTAGATGCTGCAAAGCCAGCA < 41bp 0.635045244943654 0.837567767963558 0.9237194 0.24484402 prediction 0.405045046039809 Functional Gain - OVCH1 ENSG00000187950;ENSG00000257599 CDS Human other chr12:29614806 chr12:29614807 nonsynonymous SNV 0.113 4 22 hm5C_associated_SNPs_128554 0 0 0 0 2 OVCH1 chr12:29614867 5'GT 29614867 Upstream 61bp
chr8 59359961 59359961 1 + C T COAD 59359960 + 59359940 59359980 41 TTCTTCAGGATCCTGGATGTCCGGAACTTTATTGTACAGTC TTCTTCAGGATCCTGGATGTCTGGAACTTTATTGTACAGTC < 41bp 0.589720345846604 0.79223935863 0.18462771 0.15147099 prediction 0.405038025566791 Functional Gain - UBXN2B ENSG00000215114 CDS Human protein_coding chr8:59359960 chr8:59359961 nonsynonymous SNV 0.414 3 22 hm5C_associated_SNPs_128556 0 0 0 0 1 UBXN2B chr8:59359948 3'AG 59359948 Downstream 14bp
chr13 100925515 100925515 1 + T C LUSC 100925512 + 100925492 100925532 41 AGCTGTAGCTCTTGCCAGAGCAGTAAAATATTCCTCTGCTG AGCTGTAGCTCTTGCCAGAGCAGCAAAATATTCCTCTGCTG < 41bp 0.540055276241803 0.742573540696088 0.25214708 0.19426492 prediction 0.405036528908571 Functional Gain - PCCA ENSG00000175198 CDS Human protein_coding chr13:100925512 chr13:100925515 nonsynonymous SNV 0.916 2 24 hm5C_associated_SNPs_128557 0 0 1 0 2 PCCA chr13:100925450 3'AG 100925450 Downstream 66bp
chr13 100925515 100925515 1 + T C LUSC 100925512 + 100925492 100925532 41 AGCTGTAGCTCTTGCCAGAGCAGTAAAATATTCCTCTGCTG AGCTGTAGCTCTTGCCAGAGCAGCAAAATATTCCTCTGCTG < 41bp 0.540055276241803 0.742573540696088 0.25214708 0.19426492 prediction 0.405036528908571 Functional Gain - PCCA ENSG00000175198 CDS Human protein_coding chr13:100925512 chr13:100925515 nonsynonymous SNV 0.916 2 24 hm5C_associated_SNPs_128557 0 0 1 0 2 PCCA chr13:100925600 5'GT 100925600 Upstream 86bp
chr1 153614902 153614902 1 + C T UCEC 153614901 + 153614881 153614921 41 CTTAGGGGCGGGATGTCACTCCGAGGTCAGTGCTGTGTACC CTTAGGGGCGGGATGTCACTCTGAGGTCAGTGCTGTGTACC < 41bp 0.614926752386568 0.817444799281576 0.93237805 0.8376235 prediction 0.405036093790015 Functional Gain - CHTOP ENSG00000160679 CDS Human protein_coding chr1:153614901 chr1:153614902 stopgain 1.000 1 22 hm5C_associated_SNPs_128558 0 0 1 0 1 CHTOP chr1:153614905 5'GT 153614905 Upstream 4bp
chr10 99416722 99416722 1 + C T COAD 99416721 + 99416701 99416741 41 GTGGTGCTGGATTACATCATCCGCAACACTGGTGAGCAGCT GTGGTGCTGGATTACATCATCTGCAACACTGGTGAGCAGCT < 41bp 0.430023448285006 0.702515823907089 0.3265158 0.36304438 prediction 0.405031647814178 Functional Gain - PI4K2A ENSG00000155252;ENSG00000249967 CDS Human other chr10:99416721 chr10:99416722 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_128561 0 0 0 0 1 PI4K2A chr10:99416731 5'GT 99416731 Upstream 10bp
chr4 146576316 146576316 1 + C T SKCM 146576315 + 146576295 146576335 41 ATAGGTAATTCGTATTTCTGCCCGAAGTGGAGAGGGGATCT ATAGGTAATTCGTATTTCTGCTCGAAGTGGAGAGGGGATCT < 41bp 0.620990401772781 0.823502757430906 0.16576725 0.3350382 prediction 0.405024711316251 Functional Gain - MMAA ENSG00000151611 CDS Human protein_coding chr4:146576315 chr4:146576316 synonymous SNV . 0 22 hm5C_associated_SNPs_128563 0 0 1 0 1 MMAA chr4:146576299 3'AG 146576299 Downstream 18bp
chr2 241536326 241536326 1 + C T rs139964868 241536325 + 241536305 241536345 41 GCACTGCCGGCCCAGTGACACCGAGTTCCACCCCATCGGCT GCACTGCCGGCCCAGTGACACTGAGTTCCACCCCATCGGCT < 41bp 0.474512829953831 0.702511934066331 0.08961636 0.10899222 prediction 0.405023868132661 Functional Gain - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241536325 chr2:241536326 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_128564 0 0 1 0 1 CAPN10 chr2:241536267 3'AG 241536267 Downstream 60bp
chr22 44579263 44579263 1 + C T SKCM 44579262 + 44579242 44579282 41 GCTCCCCAAGGGGGTGGAGCCCCCAGCGGAGGAGGAGCTCT GCTCCCCAAGGGGGTGGAGCCTCCAGCGGAGGAGGAGCTCT < 41bp 0.641841325806073 0.844349472451056 0.49026358 0.95660233 prediction 0.405016293289966 Functional Gain - PARVG ENSG00000138964 CDS Human protein_coding chr22:44579262 chr22:44579263 synonymous SNV . 0 22 hm5C_associated_SNPs_128566 0 0 0 0 2 PARVG chr22:44579198 3'AG 44579198 Downstream 66bp
chr22 44579263 44579263 1 + C T SKCM 44579262 + 44579242 44579282 41 GCTCCCCAAGGGGGTGGAGCCCCCAGCGGAGGAGGAGCTCT GCTCCCCAAGGGGGTGGAGCCTCCAGCGGAGGAGGAGCTCT < 41bp 0.641841325806073 0.844349472451056 0.49026358 0.95660233 prediction 0.405016293289966 Functional Gain - PARVG ENSG00000138964 CDS Human protein_coding chr22:44579262 chr22:44579263 synonymous SNV . 0 22 hm5C_associated_SNPs_128566 0 0 0 0 2 PARVG chr22:44579288 5'GT 44579288 Upstream 26bp
chr6 170176567 170176567 1 + C T SKCM 170176566 + 170176546 170176586 41 TGCAGGTGGCCCCAGCTTCTCCGTGAGCTCTGCAGCACACC TGCAGGTGGCCCCAGCTTCTCTGTGAGCTCTGCAGCACACC < 41bp 0.460262881425015 0.702505183592924 0.05472964 0.032740146 prediction 0.405010367185848 Functional Gain - ERMARD ENSG00000130023 CDS Human protein_coding chr6:170176566 chr6:170176567 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_128568 0 0 0 0 1 ERMARD chr6:170176551 3'AG 170176551 Downstream 17bp
chr11 9534102 9534102 1 + A G LIHC 9534099 + 9534079 9534119 41 CCACAGTAACCCAATCTGGACTGAGTCAACAAGTTACACTC CCACAGTAACCCAATCTGGACTGGGTCAACAAGTTACACTC < 41bp 0.60662588798429 0.809127400683885 0.090886235 0.21642405 prediction 0.405003025399189 Functional Gain - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9534099 chr11:9534102 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_128570 0 0 1 0 1 ZNF143 chr11:9534143 5'GT 9534143 Upstream 42bp
chr18 61160303 61160303 1 + A G LIHC 61160300 + 61160280 61160320 41 GAAATTTTCTGAATCAGAAACAAAAGAATGTCCTTTCAGAG GAAATTTTCTGAATCAGAAACAAGAGAATGTCCTTTCAGAG < 41bp 0.466600641099533 0.702491195377683 0.13214126 0.31288958 prediction 0.404982390755366 Functional Gain - SERPINB5 ENSG00000206075 CDS Human protein_coding chr18:61160300 chr18:61160303 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_128574 0 0 0 0 1 SERPINB5 chr18:61160328 5'GT 61160328 Upstream 26bp
chr15 41101323 41101323 1 + T A LAML 41101319 + 41101299 41101339 41 GCTTCATGTTTCTTGTAGTACGGCTGTAAGAATTGTGGCAG GCTTCATGTTTCTTGTAGTACGGCAGTAAGAATTGTGGCAG < 41bp 0.700060092263473 0.902549869606255 0.16491124 0.24868396 prediction 0.404979554685563 Functional Gain - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41101319 chr15:41101323 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_128575 0 0 1 0 1 ZFYVE19 chr15:41101317 3'AG 41101317 Downstream 7bp
chr12 109495849 109495849 1 + C A GBM 109495848 + 109495828 109495868 41 AGAGTTCACCTCCCAGTACTCCAGGGATCAGAAGGAGCCCC AGAGTTCACCTCCCAGTACTCAAGGGATCAGAAGGAGCCCC < 41bp 0.65745945630428 0.859944860503993 0.9065631 0.92649674 prediction 0.404970808399426 Functional Gain - USP30 ENSG00000135093 CDS Human protein_coding chr12:109495848 chr12:109495849 synonymous SNV . 0 22 hm5C_associated_SNPs_128578 0 0 0 0 1 USP30 chr12:109495913 5'GT 109495913 Upstream 65bp
chr20 31825574 31825574 1 + C A LUSC 31825573 + 31825553 31825593 41 GCTGTTAGCCCAGACCATGGCCCAGTTTGGAGGCCTGCCCG GCTGTTAGCCCAGACCATGGCACAGTTTGGAGGCCTGCCCG < 41bp 0.646975576011045 0.849454574460142 0.26859462 0.47768137 prediction 0.404957996898195 Functional Gain - BPIFA1 ENSG00000198183 CDS Human protein_coding chr20:31825573 chr20:31825574 synonymous SNV . 0 22 hm5C_associated_SNPs_128581 0 0 0 0 1 BPIFA1 chr20:31825503 3'AG 31825503 Downstream 72bp
chr19 1058887 1058887 1 + T G OV 1058883 + 1058863 1058903 41 ATGTAGCCCGTGAACGGGAGCGGGTGGTCCAAGGAGCCACC ATGTAGCCCGTGAACGGGAGCGGGGGGTCCAAGGAGCCACC < 41bp 0.500021414140414 0.702498174914479 0.89159036 0.91597915 prediction 0.404953521548131 Functional Gain - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1058883 chr19:1058887 nonsynonymous SNV 0.431 4 25 hm5C_associated_SNPs_128585 0 0 1 0 2 ABCA7 chr19:1058819 3'AG 1058819 Downstream 69bp
chr19 1058887 1058887 1 + T G OV 1058883 + 1058863 1058903 41 ATGTAGCCCGTGAACGGGAGCGGGTGGTCCAAGGAGCCACC ATGTAGCCCGTGAACGGGAGCGGGGGGTCCAAGGAGCCACC < 41bp 0.500021414140414 0.702498174914479 0.89159036 0.91597915 prediction 0.404953521548131 Functional Gain - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1058883 chr19:1058887 nonsynonymous SNV 0.431 4 25 hm5C_associated_SNPs_128585 0 0 1 0 2 ABCA7 chr19:1058939 5'GT 1058939 Upstream 53bp
chr2 97463383 97463383 1 + A G STAD 97463380 + 97463360 97463400 41 GCCGCTCATCGCTTCCTAGCCACAGGTAGCATGAGGAGGAC GCCGCTCATCGCTTCCTAGCCACGGGTAGCATGAGGAGGAC < 41bp 0.625292026419714 0.82775668493939 0.843579 0.8250948 prediction 0.404929317039353 Functional Gain - CNNM4 ENSG00000158158 CDS Human protein_coding chr2:97463380 chr2:97463383 synonymous SNV . 0 24 hm5C_associated_SNPs_128587 0 0 0 0 1 CNNM4 chr2:97463384 5'GT 97463384 Upstream 2bp
chr11 34938265 34938265 1 + C T rs2956109 34938264 + 34938244 34938284 41 GCGTTATCTTGTGGGCTTCCCCGGCCGCCGAAGCGTAGGGC GCGTTATCTTGTGGGCTTCCCTGGCCGCCGAAGCGTAGGGC < 41bp 0.509308779454645 0.711766802627401 0.51697046 0.43847 prediction 0.404916046345512 Functional Gain - PDHX ENSG00000110435 CDS Human protein_coding chr11:34938264 chr11:34938265 synonymous SNV . 0 22 hm5C_associated_SNPs_128591 2 0 1 0 1 PDHX chr11:34938362 5'GT 34938362 Upstream 98bp
chr5 145843190 145843190 1 + T G LUAD 145843186 + 145843166 145843206 41 TACAGTTAGTGTTTCAACTCCTGCTCCTACAGCCACACCTG TACAGTTAGTGTTTCAACTCCTGCGCCTACAGCCACACCTG < 41bp 0.487530887198154 0.702457540258417 0.041722506 0.07294127 prediction 0.404915080516834 Functional Gain - TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145843186 chr5:145843190 synonymous SNV . 0 25 hm5C_associated_SNPs_128592 0 0 1 0 1 TCERG1 chr5:145843114 3'AG 145843114 Downstream 77bp
chr2 68882101 68882101 1 + T C UCEC 68882099 + 68882079 68882119 41 TTGGTGTGGACGGTGTCCATCCTGATCGCCATCCCTTCCGC TTGGTGTGGACGGTGTCCATCCCGATCGCCATCCCTTCCGC < 41bp 0.662978957729463 0.865434733152882 0.10971692 0.18984759 prediction 0.404911550846839 Functional Gain - PROKR1 ENSG00000169618 CDS Human protein_coding chr2:68882099 chr2:68882101 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_128593 0 0 0 0 1 PROKR1 chr2:68882012 3'AG 68882012 Downstream 90bp
chr11 65107869 65107869 1 + T C UCEC 65107866 + 65107846 65107886 41 TTCCCTGCAGCCTTGGGGAGCAGTACTACAAAGATGCCATG TTCCCTGCAGCCTTGGGGAGCAGCACTACAAAGATGCCATG < 41bp 0.490942479634167 0.702446199280221 0.2837886 0.3482811 prediction 0.404892398560442 Functional Gain - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65107866 chr11:65107869 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_128597 0 0 1 0 1 DPF2 chr11:65107856 3'AG 65107856 Downstream 14bp
chr11 67352180 67352180 1 + C T STAD 67352179 + 67352159 67352199 41 TACGGGCAGCTCCCCAAGTTCCAGGACGGAGACCTCACCCT TACGGGCAGCTCCCCAAGTTCTAGGACGGAGACCTCACCCT < 41bp 0.630484775167506 0.832927208018715 0.24971998 0.27125466 prediction 0.404884865702419 Functional Gain - GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67352179 chr11:67352180 stopgain 0.997 0 22 hm5C_associated_SNPs_128598 0 0 1 0 2 GSTP1 chr11:67352156 3'AG 67352156 Downstream 25bp
chr11 67352180 67352180 1 + C T STAD 67352179 + 67352159 67352199 41 TACGGGCAGCTCCCCAAGTTCCAGGACGGAGACCTCACCCT TACGGGCAGCTCCCCAAGTTCTAGGACGGAGACCTCACCCT < 41bp 0.630484775167506 0.832927208018715 0.24971998 0.27125466 prediction 0.404884865702419 Functional Gain - GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67352179 chr11:67352180 stopgain 0.997 0 22 hm5C_associated_SNPs_128598 0 0 1 0 2 GSTP1 chr11:67352243 5'GT 67352243 Upstream 64bp
chr4 38023271 38023271 1 + A G STAD 38023268 + 38023248 38023288 41 GGCCGCAGTGCAGCAGACAGCTAAGGCGCCAGCCCAGCTGT GGCCGCAGTGCAGCAGACAGCTAGGGCGCCAGCCCAGCTGT < 41bp 0.619157408164323 0.821577477286902 0.5420916 0.89995503 prediction 0.404840138245157 Functional Gain - TBC1D1 ENSG00000065882 CDS Human protein_coding chr4:38023268 chr4:38023271 nonsynonymous SNV 0.250 0 24 hm5C_associated_SNPs_128602 0 0 0 0 1 TBC1D1 chr4:38023207 3'AG 38023207 Downstream 65bp
chr1 154408493 154408493 1 + C A BLCA 154408492 + 154408472 154408512 41 ATCCACGACGCCTGGAGCGGCCTGAGGCACGTGGTGCAGCT ATCCACGACGCCTGGAGCGGCATGAGGCACGTGGTGCAGCT < 41bp 0.435092877240614 0.702414664756479 0.71022457 0.6994885 prediction 0.404829329512958 Functional Gain - IL6R ENSG00000160712 CDS Human protein_coding chr1:154408492 chr1:154408493 nonsynonymous SNV 0.039 0 22 hm5C_associated_SNPs_128605 0 0 0 0 2 IL6R chr1:154408445 3'AG 154408445 Downstream 49bp
chr1 154408493 154408493 1 + C A BLCA 154408492 + 154408472 154408512 41 ATCCACGACGCCTGGAGCGGCCTGAGGCACGTGGTGCAGCT ATCCACGACGCCTGGAGCGGCATGAGGCACGTGGTGCAGCT < 41bp 0.435092877240614 0.702414664756479 0.71022457 0.6994885 prediction 0.404829329512958 Functional Gain - IL6R ENSG00000160712 CDS Human protein_coding chr1:154408492 chr1:154408493 nonsynonymous SNV 0.039 0 22 hm5C_associated_SNPs_128605 0 0 0 0 2 IL6R chr1:154408586 5'GT 154408586 Upstream 94bp
chr20 47851537 47851537 1 + C T COAD 47851536 + 47851516 47851556 41 CAAACCAAGAAGCAGGCCCACCGCATGCACATCCTCCTGGG CAAACCAAGAAGCAGGCCCACTGCATGCACATCCTCCTGGG < 41bp 0.65646822742538 0.858881888751188 0.122552305 0.5214593 prediction 0.404827322651615 Functional Gain - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47851536 chr20:47851537 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_128606 0 0 1 0 2 DDX27 chr20:47851472 3'AG 47851472 Downstream 66bp
chr20 47851537 47851537 1 + C T COAD 47851536 + 47851516 47851556 41 CAAACCAAGAAGCAGGCCCACCGCATGCACATCCTCCTGGG CAAACCAAGAAGCAGGCCCACTGCATGCACATCCTCCTGGG < 41bp 0.65646822742538 0.858881888751188 0.122552305 0.5214593 prediction 0.404827322651615 Functional Gain - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47851536 chr20:47851537 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_128606 0 0 1 0 2 DDX27 chr20:47851625 5'GT 47851625 Upstream 89bp
chrX 54841194 54841194 1 + A G READ 54841191 + 54841171 54841211 41 AGACCAGCAAGATGAAAGTCCTCAAGTTTGCCTGCAAGGTA AGACCAGCAAGATGAAAGTCCTCGAGTTTGCCTGCAAGGTA < 41bp 0.620388740954026 0.822800715575913 0.17961636 0.2052004 prediction 0.404823949243774 Functional Gain - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54841191 chrX:54841194 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_128607 0 0 1 1 1 MAGED2 chrX:54841208 5'GT 54841208 Upstream 15bp
chr19 48879434 48879434 1 + C A COAD 48879433 + 48879413 48879453 41 TGAGGGTGGCATGGTGCTGACCACCCTCCCCTTGCCCTCTG TGAGGGTGGCATGGTGCTGACAACCCTCCCCTTGCCCTCTG < 41bp 0.440019417052966 0.70240803765432 0.086410046 0.10391986 prediction 0.40481607530864 Functional Gain - SYNGR4 ENSG00000105467 CDS Human protein_coding chr19:48879433 chr19:48879434 synonymous SNV . 0 22 hm5C_associated_SNPs_128610 0 0 0 0 1 SYNGR4 chr19:48879342 3'AG 48879342 Downstream 93bp
chr13 20240602 20240602 1 + T C OV 20240600 + 20240580 20240620 41 AATTCAGACATCGTACGACTCGTAATTGAATGTGGAGCTGA AATTCAGACATCGTACGACTCGCAATTGAATGTGGAGCTGA < 41bp 0.403533231754868 0.70240582779006 0.12206569 0.114275664 prediction 0.404811655580121 Functional Gain - MPHOSPH8 ENSG00000196199 CDS Human protein_coding chr13:20240600 chr13:20240602 nonsynonymous SNV 0.334 2 23 hm5C_associated_SNPs_128611 0 0 1 0 1 MPHOSPH8 chr13:20240565 3'AG 20240565 Downstream 38bp
chr1 110734616 110734616 1 + A G LGG 110734613 + 110734593 110734633 41 GCTGGACAAGATGCTGGACCCCCAGGTGTGGCGGGAGGCAG GCTGGACAAGATGCTGGACCCCCGGGTGTGGCGGGAGGCAG < 41bp 0.457624091262491 0.702405006299324 0.16996309 0.34100103 prediction 0.404810012598648 Functional Gain - SLC6A17 ENSG00000197106 CDS Human protein_coding chr1:110734613 chr1:110734616 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_128612 0 0 0 0 1 SLC6A17 chr1:110734594 3'AG 110734594 Downstream 23bp
chr16 66424464 66424464 1 + C A LUSC 66424460 + 66424440 66424480 41 TTCACCATTGAGACAAACCCCGCCCACAACGAGGGCATCAT TTCACCATTGAGACAAACCCCGCCAACAACGAGGGCATCAT < 41bp 0.255131967071698 0.702402455757409 0.011950225 0.15205714 prediction 0.404804911514818 Functional Gain - CDH5 ENSG00000179776 CDS Human protein_coding chr16:66424460 chr16:66424464 nonsynonymous SNV 0.068 0 25 hm5C_associated_SNPs_128614 0 0 0 0 1 CDH5 chr16:66424493 5'GT 66424493 Upstream 30bp
chr22 40060863 40060863 1 + C G SKCM 40060862 + 40060842 40060882 41 CGTGGTGTCCCTGGCCTCAGCCGGGGGAGCCAAGATCTTGG CGTGGTGTCCCTGGCCTCAGCGGGGGGAGCCAAGATCTTGG < 41bp 0.382049647379308 0.702400258904962 0.9288038 0.9309945 prediction 0.404800517809923 Functional Gain - CACNA1I ENSG00000100346 CDS Human protein_coding chr22:40060862 chr22:40060863 synonymous SNV . 0 22 hm5C_associated_SNPs_128616 0 0 0 0 1 CACNA1I chr22:40060928 5'GT 40060928 Upstream 66bp
chr14 94674896 94674896 1 + A G COAD 94674893 + 94674873 94674913 41 GACGCTTCGGAGAGTGTTGCCAAAAGTCAGAGTAAGTTGGT GACGCTTCGGAGAGTGTTGCCAAGAGTCAGAGTAAGTTGGT < 41bp 0.589996869782052 0.792393569930539 0.81604826 0.12522641 prediction 0.404793400296974 Functional Gain - PPP4R4 ENSG00000119698 CDS Human protein_coding chr14:94674893 chr14:94674896 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_128617 0 0 1 0 1 PPP4R4 chr14:94674801 3'AG 94674801 Downstream 96bp
chr11 66239884 66239884 1 + C T SKCM 66239883 + 66239863 66239903 41 CAGCATCTCGTATACACTGTCCCGGAGCCACTCGGTCATAG CAGCATCTCGTATACACTGTCTCGGAGCCACTCGGTCATAG < 41bp 0.425036214697089 0.70239425872561 0.22821552 0.1375108 prediction 0.404788517451221 Functional Gain - PELI3 ENSG00000174516 CDS Human protein_coding chr11:66239883 chr11:66239884 synonymous SNV . 0 22 hm5C_associated_SNPs_128618 0 0 0 0 2 PELI3 chr11:66239840 3'AG 66239840 Downstream 45bp
chr11 66239884 66239884 1 + C T SKCM 66239883 + 66239863 66239903 41 CAGCATCTCGTATACACTGTCCCGGAGCCACTCGGTCATAG CAGCATCTCGTATACACTGTCTCGGAGCCACTCGGTCATAG < 41bp 0.425036214697089 0.70239425872561 0.22821552 0.1375108 prediction 0.404788517451221 Functional Gain - PELI3 ENSG00000174516 CDS Human protein_coding chr11:66239883 chr11:66239884 synonymous SNV . 0 22 hm5C_associated_SNPs_128618 0 0 0 0 2 PELI3 chr11:66239941 5'GT 66239941 Upstream 58bp
chr3 33883532 33883532 1 + A G UCEC 33883529 + 33883509 33883549 41 TCAGTTGATTAAAGAACTGCCTGAATTACTGCAACGAAATA TCAGTTGATTAAAGAACTGCCTGGATTACTGCAACGAAATA < 41bp 0.48403781575058 0.702371678590325 0.027589977 0.07128447 prediction 0.40474335718065 Functional Gain - PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33883529 chr3:33883532 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_128623 0 0 1 0 1 PDCD6IP chr3:33883566 5'GT 33883566 Upstream 35bp
chr12 54675234 54675234 1 + A G COAD 54675231 + 54675211 54675251 41 AGGGTTGAGCTTTGAAACAACTGATGAGAGCCTGAGGAGCC AGGGTTGAGCTTTGAAACAACTGGTGAGAGCCTGAGGAGCC < 41bp 0.604226806264511 0.806596896512537 0.29425645 0.23722813 prediction 0.404740180496053 Functional Gain - HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675231 chr12:54675234 nonsynonymous SNV 0.969 2 24 hm5C_associated_SNPs_128624 0 0 0 0 2 HNRNPA1 chr12:54675170 3'AG 54675170 Downstream 65bp
chr12 54675234 54675234 1 + A G COAD 54675231 + 54675211 54675251 41 AGGGTTGAGCTTTGAAACAACTGATGAGAGCCTGAGGAGCC AGGGTTGAGCTTTGAAACAACTGGTGAGAGCCTGAGGAGCC < 41bp 0.604226806264511 0.806596896512537 0.29425645 0.23722813 prediction 0.404740180496053 Functional Gain - HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675231 chr12:54675234 nonsynonymous SNV 0.969 2 24 hm5C_associated_SNPs_128624 0 0 0 0 2 HNRNPA1 chr12:54675286 5'GT 54675286 Upstream 53bp
chr10 71662556 71662556 1 + C A UCEC 71662552 + 71662532 71662572 41 GTCCACCAGGGCCCCCAGGCCCCCCTGGACCAAGTGGACCT GTCCACCAGGGCCCCCAGGCCCCCATGGACCAAGTGGACCT < 41bp 0.290462367041681 0.702363233472026 0.05218649 0.14074767 prediction 0.404726466944053 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71662552 chr10:71662556 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_128625 0 0 0 0 2 COL13A1 chr10:71662504 3'AG 71662504 Downstream 53bp
chr10 71662556 71662556 1 + C A UCEC 71662552 + 71662532 71662572 41 GTCCACCAGGGCCCCCAGGCCCCCCTGGACCAAGTGGACCT GTCCACCAGGGCCCCCAGGCCCCCATGGACCAAGTGGACCT < 41bp 0.290462367041681 0.702363233472026 0.05218649 0.14074767 prediction 0.404726466944053 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71662552 chr10:71662556 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_128625 0 0 0 0 2 COL13A1 chr10:71662611 5'GT 71662611 Upstream 56bp
chr11 34149118 34149118 1 + C A UCEC 34149114 + 34149094 34149134 41 GTGAAGAGCCTACTTGGCCCCTACCTTGTTTTCATGGCATC GTGAAGAGCCTACTTGGCCCCTACATTGTTTTCATGGCATC < 41bp 0.271827680436021 0.702361504005445 0.008900106 0.625527 prediction 0.40472300801089 Functional Gain - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34149114 chr11:34149118 nonsynonymous SNV 0.984 1 25 hm5C_associated_SNPs_128627 0 0 1 0 1 NAT10 chr11:34149146 5'GT 34149146 Upstream 29bp
chr16 20824610 20824610 1 + T C UCEC 20824607 + 20824587 20824627 41 TATGCAGTTCTGGGCAAATCCAATGTTCCAAAACCCAGGTA TATGCAGTTCTGGGCAAATCCAACGTTCCAAAACCCAGGTA < 41bp 0.54970776060934 0.752067682280625 0.5925425 0.2826535 prediction 0.40471984334257 Functional Gain - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20824607 chr16:20824610 synonymous SNV . 0 24 hm5C_associated_SNPs_128629 0 0 0 0 2 REXO5 chr16:20824512 3'AG 20824512 Downstream 99bp
chr16 20824610 20824610 1 + T C UCEC 20824607 + 20824587 20824627 41 TATGCAGTTCTGGGCAAATCCAATGTTCCAAAACCCAGGTA TATGCAGTTCTGGGCAAATCCAACGTTCCAAAACCCAGGTA < 41bp 0.54970776060934 0.752067682280625 0.5925425 0.2826535 prediction 0.40471984334257 Functional Gain - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20824607 chr16:20824610 synonymous SNV . 0 24 hm5C_associated_SNPs_128629 0 0 0 0 2 REXO5 chr16:20824624 5'GT 20824624 Upstream 15bp
chr1 227127251 227127251 1 + C A rs376937253 227127247 + 227127227 227127267 41 ACCCCGGCTGTCAGCGACTGCGGGCACCTGCACGCCGACGA ACCCCGGCTGTCAGCGACTGCGGGAACCTGCACGCCGACGA < 41bp 0.622425998243322 0.824785844993042 0.9078795 0.91247964 prediction 0.40471969349944 Functional Gain - COQ8A ENSG00000163050 UTR5 Human protein_coding chr1:227127247 chr1:227127251 . . 0 25 hm5C_associated_SNPs_128630 0 0 0 0 1 COQ8A chr1:227127292 5'GT 227127292 Upstream 42bp
chr4 145635414 145635414 1 + T C KIRC 145635411 + 145635391 145635431 41 CTTTTAGAATTCAAGCCATTCAGTAATGGTCCTTTGGTTGG CTTTTAGAATTCAAGCCATTCAGCAATGGTCCTTTGGTTGG < 41bp 0.555705375600091 0.758053281773401 0.18511012 0.2513671 prediction 0.40469581234662 Functional Gain - HHIP ENSG00000164161 CDS Human protein_coding chr4:145635411 chr4:145635414 synonymous SNV . 0 24 hm5C_associated_SNPs_128636 0 0 0 0 2 HHIP chr4:145635377 3'AG 145635377 Downstream 38bp
chr4 145635414 145635414 1 + T C KIRC 145635411 + 145635391 145635431 41 CTTTTAGAATTCAAGCCATTCAGTAATGGTCCTTTGGTTGG CTTTTAGAATTCAAGCCATTCAGCAATGGTCCTTTGGTTGG < 41bp 0.555705375600091 0.758053281773401 0.18511012 0.2513671 prediction 0.40469581234662 Functional Gain - HHIP ENSG00000164161 CDS Human protein_coding chr4:145635411 chr4:145635414 synonymous SNV . 0 24 hm5C_associated_SNPs_128636 0 0 0 0 2 HHIP chr4:145635500 5'GT 145635500 Upstream 87bp
chr19 34957830 34957830 1 + C G rs45482396 34957829 + 34957809 34957849 41 TTGAAGTTGTTGGTGATGCCCCGGAAAAAGTGGGGCCCAAA TTGAAGTTGTTGGTGATGCCCGGGAAAAAGTGGGGCCCAAA < 41bp 0.694468837432224 0.89681362857877 0.42628783 0.8430534 prediction 0.404689582293092 Functional Gain - UBA2 ENSG00000126261 CDS Human protein_coding chr19:34957829 chr19:34957830 nonsynonymous SNV 0.479 1 22 hm5C_associated_SNPs_128640 0 0 1 0 2 UBA2 chr19:34957783 3'AG 34957783 Downstream 48bp
chr19 34957830 34957830 1 + C G rs45482396 34957829 + 34957809 34957849 41 TTGAAGTTGTTGGTGATGCCCCGGAAAAAGTGGGGCCCAAA TTGAAGTTGTTGGTGATGCCCGGGAAAAAGTGGGGCCCAAA < 41bp 0.694468837432224 0.89681362857877 0.42628783 0.8430534 prediction 0.404689582293092 Functional Gain - UBA2 ENSG00000126261 CDS Human protein_coding chr19:34957829 chr19:34957830 nonsynonymous SNV 0.479 1 22 hm5C_associated_SNPs_128640 0 0 1 0 2 UBA2 chr19:34957919 5'GT 34957919 Upstream 90bp
chr11 76829348 76829348 1 + C T STAD 76829347 + 76829327 76829367 41 CATGAGGACCCGCGACAGAACCGCGGTGGCGGCTGCATCAA CATGAGGACCCGCGACAGAACTGCGGTGGCGGCTGCATCAA < 41bp 0.645570053415888 0.84790159771576 0.32808504 0.40152243 prediction 0.404663088599744 Functional Gain - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76829347 chr11:76829348 nonsynonymous SNV 0.981 4 22 hm5C_associated_SNPs_128643 0 0 0 0 1 CAPN5 chr11:76829398 5'GT 76829398 Upstream 51bp
chr10 103919017 103919017 1 + T C STAD 103919014 + 103918994 103919034 41 AGCAGTAGCAGCAGCAGCAGCAGTAGCAGTGATGACTCAGA AGCAGTAGCAGCAGCAGCAGCAGCAGCAGTGATGACTCAGA < 41bp 0.592025676743202 0.794356400389201 0.37203395 0.36493832 prediction 0.404661447291997 Functional Gain - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919014 chr10:103919017 synonymous SNV . 0 24 hm5C_associated_SNPs_128644 0 0 1 0 3 NOLC1 chr10:103918950 3'AG 103918950 Downstream 68bp
chr10 103919017 103919017 1 + T C STAD 103919014 + 103918994 103919034 41 AGCAGTAGCAGCAGCAGCAGCAGTAGCAGTGATGACTCAGA AGCAGTAGCAGCAGCAGCAGCAGCAGCAGTGATGACTCAGA < 41bp 0.592025676743202 0.794356400389201 0.37203395 0.36493832 prediction 0.404661447291997 Functional Gain - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919014 chr10:103919017 synonymous SNV . 0 24 hm5C_associated_SNPs_128644 0 0 1 0 3 NOLC1 chr10:103919065 5'GT 103919065 Upstream 49bp
chr10 103919017 103919017 1 + T C STAD 103919014 + 103918994 103919034 41 AGCAGTAGCAGCAGCAGCAGCAGTAGCAGTGATGACTCAGA AGCAGTAGCAGCAGCAGCAGCAGCAGCAGTGATGACTCAGA < 41bp 0.592025676743202 0.794356400389201 0.37203395 0.36493832 prediction 0.404661447291997 Functional Gain - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919014 chr10:103919017 synonymous SNV . 0 24 hm5C_associated_SNPs_128644 0 0 1 0 3 NOLC1 chr10:103919095 5'GT 103919095 Upstream 79bp
chr19 55857887 55857887 1 + C T UCEC 55857886 + 55857866 55857906 41 AGGAAAGGTGAAGGAGCTTTCCGAACCAGGCCTAGGGAGCC AGGAAAGGTGAAGGAGCTTTCTGAACCAGGCCTAGGGAGCC < 41bp 0.620199999594684 0.822521904782227 0.62288636 0.30774993 prediction 0.404643810375085 Functional Gain - KMT5C ENSG00000133247 CDS Human protein_coding chr19:55857886 chr19:55857887 stopgain 0.362 0 22 hm5C_associated_SNPs_128648 0 0 1 0 1 KMT5C chr19:55857868 3'AG 55857868 Downstream 20bp
chr16 1291234 1291234 1 + C T SKCM 1291233 + 1291213 1291253 41 AAGTGGCCCTGGCAGGTGAGCCTGAGAGTCCACGGCCCATA AAGTGGCCCTGGCAGGTGAGCTTGAGAGTCCACGGCCCATA < 41bp 0.614495900991405 0.81681058991167 0.90071946 0.71817994 prediction 0.404629377840529 Functional Gain - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291233 chr16:1291234 synonymous SNV . 0 22 hm5C_associated_SNPs_128651 0 0 0 0 1 TPSAB1 chr16:1291325 5'GT 1291325 Upstream 92bp
chr20 56137903 56137903 1 + T C TGCT 56137900 + 56137880 56137920 41 CCCGTCCTGGAAGCAGTGGGCGATGGGGAGTTTGTCAAATG CCCGTCCTGGAAGCAGTGGGCGACGGGGAGTTTGTCAAATG < 41bp 0.516108763702953 0.718420962564545 0.62111557 0.6957712 prediction 0.404624397723185 Functional Gain - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56137900 chr20:56137903 synonymous SNV . 0 24 hm5C_associated_SNPs_128652 0 0 0 0 1 PCK1 chr20:56137955 5'GT 56137955 Upstream 53bp
chr11 128786315 128786315 1 + C G SKCM 128786311 + 128786291 128786331 41 TCCGTTTCCCCAGGCATGACCTGCCAAGCCCGGAGCTCCTA TCCGTTTCCCCAGGCATGACCTGCGAAGCCCGGAGCTCCTA < 41bp 0.395605305723142 0.702299761534523 0.0752877 0.07977778 prediction 0.404599523069047 Functional Gain - KCNJ5 ENSG00000120457 CDS Human protein_coding chr11:128786311 chr11:128786315 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_128654 0 0 0 0 1 KCNJ5 chr11:128786304 3'AG 128786304 Downstream 12bp
chr20 62632543 62632543 1 + C T rs149287029 62632542 + 62632522 62632562 41 TGTCAGGATTTACATCAGAGCCGCAGAGCTGGAAACGGACA TGTCAGGATTTACATCAGAGCTGCAGAGCTGGAAACGGACA < 41bp 0.438768724506631 0.702291815468398 0.121661514 0.12085056 prediction 0.404583630936796 Functional Gain - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62632542 chr20:62632543 synonymous SNV . 0 22 hm5C_associated_SNPs_128658 0 0 1 0 1 PRPF6 chr20:62632592 5'GT 62632592 Upstream 50bp
chr20 34129842 34129842 1 + T A rs200394220 34129838 + 34129818 34129858 41 GGCTGGCGTCCCCTTTCCGGCCGGTCCCCATGGAGGCGCTG GGCTGGCGTCCCCTTTCCGGCCGGACCCCATGGAGGCGCTG < 41bp 0.483656881233247 0.702291001070484 0.056591272 0.06236559 prediction 0.404582002140968 Functional Gain - ERGIC3 ENSG00000125991 UTR5 Human protein_coding chr20:34129838 chr20:34129842 . . 0 25 hm5C_associated_SNPs_128659 0 0 1 0 1 ERGIC3 chr20:34129934 5'GT 34129934 Upstream 93bp
chr4 141458621 141458621 1 + T C UCEC 141458618 + 141458598 141458638 41 AGATAACTGGTTATAAACAGCTGTATTTGGATGTAGAAAGT AGATAACTGGTTATAAACAGCTGCATTTGGATGTAGAAAGT < 41bp 0.476822956016683 0.702289646198829 0.30948657 0.2658868 prediction 0.404579292397659 Functional Gain - ELMOD2 ENSG00000179387 CDS Human protein_coding chr4:141458618 chr4:141458621 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_128661 0 0 1 0 2 ELMOD2 chr4:141458566 3'AG 141458566 Downstream 56bp
chr4 141458621 141458621 1 + T C UCEC 141458618 + 141458598 141458638 41 AGATAACTGGTTATAAACAGCTGTATTTGGATGTAGAAAGT AGATAACTGGTTATAAACAGCTGCATTTGGATGTAGAAAGT < 41bp 0.476822956016683 0.702289646198829 0.30948657 0.2658868 prediction 0.404579292397659 Functional Gain - ELMOD2 ENSG00000179387 CDS Human protein_coding chr4:141458618 chr4:141458621 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_128661 0 0 1 0 2 ELMOD2 chr4:141458695 5'GT 141458695 Upstream 75bp
chrX 48675752 48675752 1 + T C LIHC 48675749 + 48675729 48675769 41 CCAGGTTCTGAATGGTGCTGCTGTGGTGCGTCCCCCAGGAC CCAGGTTCTGAATGGTGCTGCTGCGGTGCGTCCCCCAGGAC < 41bp 0.487761592733622 0.702289594063076 0.28964084 0.29200447 prediction 0.404579188126151 Functional Gain - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48675749 chrX:48675752 nonsynonymous SNV 0.909 1 24 hm5C_associated_SNPs_128662 0 0 0 0 1 HDAC6 chrX:48675733 3'AG 48675733 Downstream 20bp
chr19 42266032 42266032 1 + C T SKCM 42266031 + 42266011 42266051 41 TCCACACAAGAGCTCTTTATCCCCAACATCACTGTGAATAA TCCACACAAGAGCTCTTTATCTCCAACATCACTGTGAATAA < 41bp 0.654827473603604 0.857110912823896 0.20885688 0.9607996 prediction 0.404566878440585 Functional Gain - CEACAM6 ENSG00000086548 CDS Human protein_coding chr19:42266031 chr19:42266032 nonsynonymous SNV 0.304 2 22 hm5C_associated_SNPs_128665 0 0 0 0 1 CEACAM6 chr19:42266131 5'GT 42266131 Upstream 100bp
chr10 101610401 101610401 1 + T C UCEC 101610399 + 101610379 101610419 41 TGTGCCTGGGCAGGGCTCTGCTTCGGAAATCCAAGATCCTG TGTGCCTGGGCAGGGCTCTGCTCCGGAAATCCAAGATCCTG < 41bp 0.413867620557226 0.702282170240634 0.13263324 0.27614242 prediction 0.404564340481268 Functional Gain - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101610399 chr10:101610401 synonymous SNV . 0 23 hm5C_associated_SNPs_128666 0 0 1 0 1 ABCC2 chr10:101610359 3'AG 101610359 Downstream 43bp
chr11 119003427 119003427 1 + C T GBM 119003426 + 119003406 119003446 41 TGCCCGCTGCCTTCCTCCCTCCGCAACCACATGCGCTTTCG TGCCCGCTGCCTTCCTCCCTCTGCAACCACATGCGCTTTCG < 41bp 0.656459034812323 0.858739825043817 0.091798574 0.44823673 prediction 0.404561580462988 Functional Gain - HINFP ENSG00000172273 CDS Human protein_coding chr11:119003426 chr11:119003427 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_128668 0 0 1 0 2 HINFP chr11:119003371 3'AG 119003371 Downstream 57bp
chr11 119003427 119003427 1 + C T GBM 119003426 + 119003406 119003446 41 TGCCCGCTGCCTTCCTCCCTCCGCAACCACATGCGCTTTCG TGCCCGCTGCCTTCCTCCCTCTGCAACCACATGCGCTTTCG < 41bp 0.656459034812323 0.858739825043817 0.091798574 0.44823673 prediction 0.404561580462988 Functional Gain - HINFP ENSG00000172273 CDS Human protein_coding chr11:119003426 chr11:119003427 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_128668 0 0 1 0 2 HINFP chr11:119003491 5'GT 119003491 Upstream 65bp
chr17 48738457 48738457 1 + T C rs200779271 48738455 + 48738435 48738475 41 ATCCAGGACCTGCTCTCCTTCATCAATCCACAGCTGCTCAG ATCCAGGACCTGCTCTCCTTCACCAATCCACAGCTGCTCAG < 41bp 0.417331543807885 0.702277216030254 0.25152725 0.28967893 prediction 0.404554432060508 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48738455 chr17:48738457 nonsynonymous SNV 0.514 1 23 hm5C_associated_SNPs_128669 0 0 0 0 1 ABCC3 chr17:48738475 5'GT 48738475 Upstream 19bp
chr14 51099023 51099023 1 + A G SKCM 51099020 + 51099000 51099040 41 AGCTTTCCCTACACCAAAGTCGGAATCTACTGAACAATCAG AGCTTTCCCTACACCAAAGTCGGGATCTACTGAACAATCAG < 41bp 0.58080003683908 0.783076697382278 0.39245823 0.39953178 prediction 0.404553321086397 Functional Gain - ATL1 ENSG00000198513 CDS Human protein_coding chr14:51099020 chr14:51099023 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_128670 0 0 0 0 1 ATL1 chr14:51098947 3'AG 51098947 Downstream 77bp
chr19 49378882 49378882 1 + C T UCEC 49378881 + 49378861 49378901 41 CTGCCCGCAGGTGCGCTTCTCCGAGAAGGTCACTGTCCATT CTGCCCGCAGGTGCGCTTCTCTGAGAAGGTCACTGTCCATT < 41bp 0.588099393953375 0.790365006483228 0.88531995 0.7896426 prediction 0.404531225059706 Functional Gain - PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49378881 chr19:49378882 synonymous SNV . 0 22 hm5C_associated_SNPs_128672 0 0 1 0 1 PPP1R15A chr19:49378871 3'AG 49378871 Downstream 12bp
chr11 89892482 89892482 1 + C A COAD 89892478 + 89892458 89892498 41 TGTGAGTTATAGTATCGGACCTGGCTTTACAGGGAGTGATT TGTGAGTTATAGTATCGGACCTGGATTTACAGGGAGTGATT < 41bp 0.294679868240962 0.702263409529553 0.18089607 0.23089886 prediction 0.404526819059107 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89892478 chr11:89892482 synonymous SNV . 0 25 hm5C_associated_SNPs_128673 0 0 1 0 1 NAALAD2 chr11:89892407 3'AG 89892407 Downstream 76bp
chr10 19856477 19856477 1 + T G ESCA 19856474 + 19856454 19856494 41 GCTAAACATCCTGGTGTGGTCAGTGATTGGAAATAAAAGAA GCTAAACATCCTGGTGTGGTCAGGGATTGGAAATAAAAGAA < 41bp 0.31521551156888 0.702262610485565 0.17311028 0.8650396 prediction 0.40452522097113 Functional Gain - MALRD1 ENSG00000204740 CDS Human protein_coding chr10:19856474 chr10:19856477 nonsynonymous SNV 0.467 0 24 hm5C_associated_SNPs_128674 0 0 1 0 1 MALRD1 chr10:19856431 3'AG 19856431 Downstream 47bp
chr17 6941536 6941536 1 + C G UCS 6941533 + 6941513 6941553 41 TGTCCTGTTATTTCTCTCGCCGACGATCCCTGGCCACCGGG TGTCCTGTTATTTCTCTCGCCGAGGATCCCTGGCCACCGGG < 41bp 0.515357796624098 0.717619396502441 0.31447312 0.91114414 prediction 0.404523199756686 Functional Gain - SLC16A13 ENSG00000174327 CDS Human protein_coding chr17:6941533 chr17:6941536 nonsynonymous SNV 0.402 4 24 hm5C_associated_SNPs_128675 0 0 1 0 1 SLC16A13 chr17:6941471 3'AG 6941471 Downstream 66bp
chr16 23387158 23387158 1 + C A COAD 23387157 + 23387137 23387177 41 GGGGAGAAATACTGCAACAACCGGGACTTCCCAGACTGGGG GGGGAGAAATACTGCAACAACAGGGACTTCCCAGACTGGGG < 41bp 0.659341796443502 0.8616027545343 0.59421176 0.7683209 prediction 0.404521916181596 Functional Gain - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23387157 chr16:23387158 synonymous SNV . 0 22 hm5C_associated_SNPs_128676 0 0 0 0 2 SCNN1B chr16:23387059 3'AG 23387059 Downstream 100bp
chr16 23387158 23387158 1 + C A COAD 23387157 + 23387137 23387177 41 GGGGAGAAATACTGCAACAACCGGGACTTCCCAGACTGGGG GGGGAGAAATACTGCAACAACAGGGACTTCCCAGACTGGGG < 41bp 0.659341796443502 0.8616027545343 0.59421176 0.7683209 prediction 0.404521916181596 Functional Gain - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23387157 chr16:23387158 synonymous SNV . 0 22 hm5C_associated_SNPs_128676 0 0 0 0 2 SCNN1B chr16:23387176 5'GT 23387176 Upstream 19bp
chr12 53800472 53800472 1 + C T ESCA 53800471 + 53800451 53800491 41 AAACAGCCCAGATGCCCAACCCCAAGCCGGTCGGAGGACCC AAACAGCCCAGATGCCCAACCTCAAGCCGGTCGGAGGACCC < 41bp 0.410325647541371 0.702256163154608 0.2745837 0.23895729 prediction 0.404512326309217 Functional Gain - SP1 ENSG00000185591 CDS Human protein_coding chr12:53800471 chr12:53800472 synonymous SNV . 0 22 hm5C_associated_SNPs_128679 0 0 1 0 1 SP1 chr12:53800537 5'GT 53800537 Upstream 66bp
chr17 47294040 47294040 1 + C T LUAD 47294039 + 47294019 47294059 41 GCCCTGCGGCAGGTGGAAGCCCGTGTAAGCACGCTGGGCCA GCCCTGCGGCAGGTGGAAGCCTGTGTAAGCACGCTGGGCCA < 41bp 0.611720375873432 0.813976353082523 0.7849573 0.77478135 prediction 0.404511954418181 Functional Gain - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47294039 chr17:47294040 nonsynonymous SNV 0.166 3 22 hm5C_associated_SNPs_128680 0 0 0 0 2 ABI3 chr17:47294042 5'GT 47294042 Upstream 3bp
chr17 47294040 47294040 1 + C T LUAD 47294039 + 47294019 47294059 41 GCCCTGCGGCAGGTGGAAGCCCGTGTAAGCACGCTGGGCCA GCCCTGCGGCAGGTGGAAGCCTGTGTAAGCACGCTGGGCCA < 41bp 0.611720375873432 0.813976353082523 0.7849573 0.77478135 prediction 0.404511954418181 Functional Gain - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47294039 chr17:47294040 nonsynonymous SNV 0.166 3 22 hm5C_associated_SNPs_128680 0 0 0 0 2 ABI3 chr17:47294060 5'GT 47294060 Upstream 21bp
chr17 4848086 4848086 1 + T A UCEC 4848084 + 4848064 4848104 41 CCATTTGCAAGCAGCCTGTTCATCGGGGTCCTGGGGACGAA CCATTTGCAAGCAGCCTGTTCAACGGGGTCCTGGGGACGAA < 41bp 0.521935361287845 0.72418636470375 0.35866266 0.71746886 prediction 0.40450200683181 Functional Gain - RNF167 ENSG00000108523 CDS Human protein_coding chr17:4848084 chr17:4848086 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_128683 0 0 1 0 1 RNF167 chr17:4848010 3'AG 4848010 Downstream 77bp
chr10 85902441 85902441 1 + C T UCEC 85902440 + 85902420 85902460 41 ACCAAAACAAGAATTGGGATCCGGCGTGGGAGAACTGGCCA ACCAAAACAAGAATTGGGATCTGGCGTGGGAGAACTGGCCA < 41bp 0.604268454628296 0.806518883672344 0.39413023 0.18671086 prediction 0.404500858088096 Functional Gain - GHITM ENSG00000165678 CDS Human protein_coding chr10:85902440 chr10:85902441 nonsynonymous SNV 0.815 2 22 hm5C_associated_SNPs_128685 0 0 1 0 2 GHITM chr10:85902411 3'AG 85902411 Downstream 31bp
chr10 85902441 85902441 1 + C T UCEC 85902440 + 85902420 85902460 41 ACCAAAACAAGAATTGGGATCCGGCGTGGGAGAACTGGCCA ACCAAAACAAGAATTGGGATCTGGCGTGGGAGAACTGGCCA < 41bp 0.604268454628296 0.806518883672344 0.39413023 0.18671086 prediction 0.404500858088096 Functional Gain - GHITM ENSG00000165678 CDS Human protein_coding chr10:85902440 chr10:85902441 nonsynonymous SNV 0.815 2 22 hm5C_associated_SNPs_128685 0 0 1 0 2 GHITM chr10:85902510 5'GT 85902510 Upstream 70bp
chr3 52833885 52833885 1 + C G rs74587399 52833884 + 52833864 52833904 41 GCACTTAGTCCAGGCCACGCCCGAGAACCTCCAGGAGGCCA GCACTTAGTCCAGGCCACGCCGGAGAACCTCCAGGAGGCCA < 41bp 0.373439942671662 0.702249495128967 0.11342645 0.7997638 prediction 0.404498990257934 Functional Gain - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52833884 chr3:52833885 synonymous SNV . 0 22 hm5C_associated_SNPs_128687 0 0 1 0 1 ITIH3 chr3:52833937 5'GT 52833937 Upstream 53bp
chr10 115345649 115345649 1 + T C rs148362361 115345646 + 115345626 115345666 41 TATGACCACATGATTGATGACAGTATGATCTGTGCAGGAAA TATGACCACATGATTGATGACAGCATGATCTGTGCAGGAAA < 41bp 0.470640211315571 0.702232960026299 0.19363752 0.10606098 prediction 0.404465920052597 Functional Gain - HABP2 ENSG00000148702 CDS Human protein_coding chr10:115345646 chr10:115345649 synonymous SNV . 0 24 hm5C_associated_SNPs_128693 0 0 0 0 2 HABP2 chr10:115345552 3'AG 115345552 Downstream 98bp
chr10 115345649 115345649 1 + T C rs148362361 115345646 + 115345626 115345666 41 TATGACCACATGATTGATGACAGTATGATCTGTGCAGGAAA TATGACCACATGATTGATGACAGCATGATCTGTGCAGGAAA < 41bp 0.470640211315571 0.702232960026299 0.19363752 0.10606098 prediction 0.404465920052597 Functional Gain - HABP2 ENSG00000148702 CDS Human protein_coding chr10:115345646 chr10:115345649 synonymous SNV . 0 24 hm5C_associated_SNPs_128693 0 0 0 0 2 HABP2 chr10:115345697 5'GT 115345697 Upstream 49bp
chr4 146576365 146576365 1 + C G LUSC 146576364 + 146576344 146576384 41 TGGGATAAAATGAAAGATTTCCAGGACCTAATGCTTGCCAG TGGGATAAAATGAAAGATTTCGAGGACCTAATGCTTGCCAG < 41bp 0.687170349018583 0.88939403494831 0.35153198 0.41468987 prediction 0.404447371859456 Functional Gain - MMAA ENSG00000151611 CDS Human protein_coding chr4:146576364 chr4:146576365 nonsynonymous SNV 0.071 1 22 hm5C_associated_SNPs_128696 0 0 0 0 1 MMAA chr4:146576299 3'AG 146576299 Downstream 67bp
chr2 108881728 108881728 1 + T C COAD 108881725 + 108881705 108881745 41 AGACTGGAAGAACTATTTTACTGTGGCCCAAAATGAAGAAT AGACTGGAAGAACTATTTTACTGCGGCCCAAAATGAAGAAT < 41bp 0.524202724325482 0.726425931953086 0.059737653 0.11997917 prediction 0.404446415255208 Functional Gain - SULT1C3 ENSG00000196228 CDS Human protein_coding chr2:108881725 chr2:108881728 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_128697 0 0 0 0 1 SULT1C3 chr2:108881695 3'AG 108881695 Downstream 34bp
chr19 571558 571558 1 + C G BLCA 571554 + 571534 571574 41 CTGAGGCCCCCACAATGAAGCAGTCGGACGCGTCTCCCCAA CTGAGGCCCCCACAATGAAGCAGTGGGACGCGTCTCCCCAA < 41bp 0.396472365217283 0.702218364629245 0.25006127 0.3941837 prediction 0.404436729258491 Functional Gain - BSG ENSG00000172270 CDS Human protein_coding chr19:571554 chr19:571558 nonsynonymous SNV 0.011 1 25 hm5C_associated_SNPs_128699 0 0 0 0 1 BSG chr19:571579 5'GT 571579 Upstream 22bp
chr6 116559428 116559428 1 + C A UCEC 116559424 + 116559404 116559444 41 AGTAATTGGGAGACAGTCCTCATCCTGGAAGAACTCAGAGG AGTAATTGGGAGACAGTCCTCATCATGGAAGAACTCAGAGG < 41bp 0.283077102421384 0.702218109157354 0.17601573 0.19068503 prediction 0.404436218314709 Functional Gain - NT5DC1 ENSG00000178425 CDS Human protein_coding chr6:116559424 chr6:116559428 nonsynonymous SNV 0.799 3 25 hm5C_associated_SNPs_128700 0 0 1 0 2 NT5DC1 chr6:116559350 3'AG 116559350 Downstream 79bp
chr6 116559428 116559428 1 + C A UCEC 116559424 + 116559404 116559444 41 AGTAATTGGGAGACAGTCCTCATCCTGGAAGAACTCAGAGG AGTAATTGGGAGACAGTCCTCATCATGGAAGAACTCAGAGG < 41bp 0.283077102421384 0.702218109157354 0.17601573 0.19068503 prediction 0.404436218314709 Functional Gain - NT5DC1 ENSG00000178425 CDS Human protein_coding chr6:116559424 chr6:116559428 nonsynonymous SNV 0.799 3 25 hm5C_associated_SNPs_128700 0 0 1 0 2 NT5DC1 chr6:116559511 5'GT 116559511 Upstream 84bp
chr16 2282496 2282496 1 + C T LGG 2282495 + 2282475 2282515 41 CACATGGTCACTCACAGCAGCCGCAAGGACCACGAGTGCAA CACATGGTCACTCACAGCAGCTGCAAGGACCACGAGTGCAA < 41bp 0.439637795741574 0.702208681435189 0.026062608 0.21057722 prediction 0.404417362870377 Functional Gain - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2282495 chr16:2282496 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_128703 0 0 0 0 2 E4F1 chr16:2282457 3'AG 2282457 Downstream 40bp
chr16 2282496 2282496 1 + C T LGG 2282495 + 2282475 2282515 41 CACATGGTCACTCACAGCAGCCGCAAGGACCACGAGTGCAA CACATGGTCACTCACAGCAGCTGCAAGGACCACGAGTGCAA < 41bp 0.439637795741574 0.702208681435189 0.026062608 0.21057722 prediction 0.404417362870377 Functional Gain - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2282495 chr16:2282496 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_128703 0 0 0 0 2 E4F1 chr16:2282577 5'GT 2282577 Upstream 82bp
chr4 4411307 4411307 1 + T C UCEC 4411304 + 4411284 4411324 41 CCACCTCTGCCCACAGGTCTCCGTGTTGGTCCTCTTCGCCC CCACCTCTGCCCACAGGTCTCCGCGTTGGTCCTCTTCGCCC < 41bp 0.502223388027106 0.704430008581131 0.29371297 0.45129514 prediction 0.404413241108051 Functional Gain - NSG1 ENSG00000168824 CDS Human protein_coding chr4:4411304 chr4:4411307 nonsynonymous SNV 0.881 1 24 hm5C_associated_SNPs_128705 0 0 0 0 1 NSG1 chr4:4411300 3'AG 4411300 Downstream 8bp
chr6 35782490 35782490 1 + T A SKCM 35782486 + 35782466 35782506 41 ATTGGCGACGCCCTCATCCTCTCCTTCCTGGCCTTCGTGTT ATTGGCGACGCCCTCATCCTCTCCATCCTGGCCTTCGTGTT < 41bp 0.723998376095048 0.926203419230497 0.016689867 0.95179677 prediction 0.404410086270898 Functional Gain - LHFPL5 ENSG00000197753 CDS Human protein_coding chr6:35782486 chr6:35782490 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_128707 0 0 0 0 1 LHFPL5 chr6:35782559 5'GT 35782559 Upstream 70bp
chr17 80684737 80684737 1 + T A STAD 80684735 + 80684715 80684755 41 ATCCCTGACCTGTTCCGTGACCTGGAGATCATCCCAGCCTT ATCCCTGACCTGTTCCGTGACCAGGAGATCATCCCAGCCTT < 41bp 0.486963713073246 0.702200930786005 0.4096368 0.9050604 prediction 0.40440186157201 Functional Gain - FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80684735 chr17:80684737 nonsynonymous SNV 0.008 2 23 hm5C_associated_SNPs_128709 0 0 1 0 1 FN3KRP chr17:80684709 3'AG 80684709 Downstream 29bp
chr4 6695708 6695708 1 + C T rs543945473 6695707 + 6695687 6695727 41 ATGATCATAGACGTCTTTTCCCGATATTCGGGCAGCGAGGG ATGATCATAGACGTCTTTTCCTGATATTCGGGCAGCGAGGG < 41bp 0.481603674774095 0.702200700944994 0.5845327 0.34583682 prediction 0.404401401889988 Functional Gain - S100P ENSG00000163993 CDS Human protein_coding chr4:6695707 chr4:6695708 stopgain 0.002 0 22 hm5C_associated_SNPs_128710 0 0 1 0 1 S100P chr4:6695797 5'GT 6695797 Upstream 90bp
chr19 11471968 11471968 1 + C A STAD 11471967 + 11471947 11471987 41 TGGTGACCGGCAATCCCACGCCACACTTCCTGTCCGTGTGC TGGTGACCGGCAATCCCACGCAACACTTCCTGTCCGTGTGC < 41bp 0.446443559705337 0.702193788011385 0.1607973 0.10585967 prediction 0.404387576022771 Functional Gain - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11471967 chr19:11471968 nonsynonymous SNV 0.959 5 22 hm5C_associated_SNPs_128714 0 0 0 0 1 PLPPR2 chr19:11471893 3'AG 11471893 Downstream 76bp
chr6 88117739 88117739 1 + C G rs115922456 88117738 + 88117718 88117758 41 GCTGCGAGCGCCCAACTGCTCCGACCGTCGCGGTGAGGGCC GCTGCGAGCGCCCAACTGCTCGGACCGTCGCGGTGAGGGCC < 41bp 0.409573077065629 0.702192102571208 0.23800343 0.8769802 prediction 0.404384205142416 Functional Gain - CFAP206 ENSG00000213204;ENSG00000272514 UTR5 Human other chr6:88117738 chr6:88117739 . . 0 22 hm5C_associated_SNPs_128717 0 0 0 0 1 CFAP206 chr6:88117807 5'GT 88117807 Upstream 69bp
chr16 69356584 69356584 1 + T C GBM 69356582 + 69356562 69356602 41 GATGTCCCTGGGGACAAACTCTTAGAGCCTGTGGTTTGCAT GATGTCCCTGGGGACAAACTCTCAGAGCCTGTGGTTTGCAT < 41bp 0.414634604434319 0.702178898926954 0.048731774 0.07958427 prediction 0.404357797853909 Functional Gain - VPS4A ENSG00000132612 CDS Human protein_coding chr16:69356582 chr16:69356584 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_128722 0 0 1 0 1 VPS4A chr16:69356603 5'GT 69356603 Upstream 20bp
chr2 27665528 27665528 1 + C T LGG 27665527 + 27665507 27665547 41 CGTGAACCTGCTGCTGGGGGCCGTGCTGCATGGCACCGTCC CGTGAACCTGCTGCTGGGGGCTGTGCTGCATGGCACCGTCC < 41bp 0.471607427063126 0.702178419233897 0.4577179 0.34855205 prediction 0.404356838467794 Functional Gain - KRTCAP3 ENSG00000157992 CDS Human protein_coding chr2:27665527 chr2:27665528 synonymous SNV . 0 22 hm5C_associated_SNPs_128723 0 0 1 0 1 KRTCAP3 chr2:27665446 3'AG 27665446 Downstream 83bp
chr3 132068794 132068794 1 + T C UCEC 132068792 + 132068772 132068812 41 GTCAATGAAATCCTCAATCACATGAAGAGAGCAACTCAGAT GTCAATGAAATCCTCAATCACACGAAGAGAGCAACTCAGAT < 41bp 0.410481749068467 0.702178123598402 0.32004493 0.077647805 prediction 0.404356247196805 Functional Gain - ACPP ENSG00000014257 CDS Human protein_coding chr3:132068792 chr3:132068794 nonsynonymous SNV 0.940 1 23 hm5C_associated_SNPs_128724 0 0 0 0 2 ACPP chr3:132068764 3'AG 132068764 Downstream 31bp
chr3 132068794 132068794 1 + T C UCEC 132068792 + 132068772 132068812 41 GTCAATGAAATCCTCAATCACATGAAGAGAGCAACTCAGAT GTCAATGAAATCCTCAATCACACGAAGAGAGCAACTCAGAT < 41bp 0.410481749068467 0.702178123598402 0.32004493 0.077647805 prediction 0.404356247196805 Functional Gain - ACPP ENSG00000014257 CDS Human protein_coding chr3:132068792 chr3:132068794 nonsynonymous SNV 0.940 1 23 hm5C_associated_SNPs_128724 0 0 0 0 2 ACPP chr3:132068846 5'GT 132068846 Upstream 53bp
chr15 72954664 72954664 1 + C T CESC 72954663 + 72954643 72954683 41 CTACAAGATGAGGCCAAACACCTGAGGCAGGAGGTGGAAGG CTACAAGATGAGGCCAAACACTTGAGGCAGGAGGTGGAAGG < 41bp 0.644786997622593 0.846962921627393 0.50915915 0.3582477 prediction 0.4043518480096 Functional Gain - GOLGA6B ENSG00000215186 CDS Human protein_coding chr15:72954663 chr15:72954664 synonymous SNV . 0 22 hm5C_associated_SNPs_128725 0 0 0 0 1 GOLGA6B chr15:72954593 3'AG 72954593 Downstream 72bp
chr17 38240916 38240916 1 + C T UCEC 38240915 + 38240895 38240935 41 CGTAAGCTGATTGAGCAGAACCGGGAGCGGCGGCGGAAGGA CGTAAGCTGATTGAGCAGAACTGGGAGCGGCGGCGGAAGGA < 41bp 0.634146262394375 0.836314295504497 0.86016333 0.8617337 prediction 0.404336066220244 Functional Gain - THRA ENSG00000126351 CDS Human protein_coding chr17:38240915 chr17:38240916 nonsynonymous SNV 0.995 5 22 hm5C_associated_SNPs_128729 0 0 1 0 1 THRA chr17:38240863 3'AG 38240863 Downstream 54bp
chr8 110394751 110394751 1 + A G STAD 110394748 + 110394728 110394768 41 TGTGGACGGGGTTCCTGTTACGGAAAATAACACCTGCAAAG TGTGGACGGGGTTCCTGTTACGGGAAATAACACCTGCAAAG < 41bp 0.521473869162687 0.723615157462338 0.31399432 0.88550806 prediction 0.404282576599302 Functional Gain - PKHD1L1 ENSG00000205038 CDS Human protein_coding chr8:110394748 chr8:110394751 nonsynonymous SNV 0.983 0 24 hm5C_associated_SNPs_128735 0 0 0 0 2 PKHD1L1 chr8:110394692 3'AG 110394692 Downstream 60bp
chr8 110394751 110394751 1 + A G STAD 110394748 + 110394728 110394768 41 TGTGGACGGGGTTCCTGTTACGGAAAATAACACCTGCAAAG TGTGGACGGGGTTCCTGTTACGGGAAATAACACCTGCAAAG < 41bp 0.521473869162687 0.723615157462338 0.31399432 0.88550806 prediction 0.404282576599302 Functional Gain - PKHD1L1 ENSG00000205038 CDS Human protein_coding chr8:110394748 chr8:110394751 nonsynonymous SNV 0.983 0 24 hm5C_associated_SNPs_128735 0 0 0 0 2 PKHD1L1 chr8:110394800 5'GT 110394800 Upstream 50bp
chr12 662448 662448 1 + T A rs758790 662446 + 662426 662466 41 ACAACCAGAATGCCAGGATGCTTGAGGGAAGACAGACACCT ACAACCAGAATGCCAGGATGCTAGAGGGAAGACAGACACCT < 41bp 0.551636860753959 0.7537769306466 0.3745634 0.70171267 prediction 0.404280139785281 Functional Gain - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:662446 chr12:662448 synonymous SNV . 0 23 hm5C_associated_SNPs_128736 0 0 0 0 2 B4GALNT3 chr12:662357 3'AG 662357 Downstream 92bp
chr12 662448 662448 1 + T A rs758790 662446 + 662426 662466 41 ACAACCAGAATGCCAGGATGCTTGAGGGAAGACAGACACCT ACAACCAGAATGCCAGGATGCTAGAGGGAAGACAGACACCT < 41bp 0.551636860753959 0.7537769306466 0.3745634 0.70171267 prediction 0.404280139785281 Functional Gain - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:662446 chr12:662448 synonymous SNV . 0 23 hm5C_associated_SNPs_128736 0 0 0 0 2 B4GALNT3 chr12:662360 3'AG 662360 Downstream 89bp
chr19 3121077 3121077 1 + A G SKCM 3121074 + 3121054 3121094 41 CAGCGACAAGATCATCTACTCACACTTCACGTGTGCCACCG CAGCGACAAGATCATCTACTCACGCTTCACGTGTGCCACCG < 41bp 0.464698054741983 0.702132979978281 0.067011386 0.28343254 prediction 0.404265959956561 Functional Gain - GNA11 ENSG00000088256 CDS Human protein_coding chr19:3121074 chr19:3121077 nonsynonymous SNV 0.965 5 24 hm5C_associated_SNPs_128738 0 0 1 0 1 GNA11 chr19:3120987 3'AG 3120987 Downstream 91bp
chr16 1825805 1825805 1 + C T UCEC 1825804 + 1825784 1825824 41 CTCTCTGTCCCCAGGCAGTACCGGGAATCCCAGGCCTTCTC CTCTCTGTCCCCAGGCAGTACTGGGAATCCCAGGCCTTCTC < 41bp 0.582050862804053 0.784181243513934 0.88191855 0.74949545 prediction 0.404260761419762 Functional Gain - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825804 chr16:1825805 nonsynonymous SNV 0.224 0 22 hm5C_associated_SNPs_128739 0 0 1 0 1 EME2 chr16:1825798 3'AG 1825798 Downstream 8bp
chr2 32422793 32422793 1 + C T rs139761058 32422792 + 32422772 32422812 41 TTAGCTTGTGTGGAATTATTCCGGGACTTAGCAGTATCTTC TTAGCTTGTGTGGAATTATTCTGGGACTTAGCAGTATCTTC < 41bp 0.588925280606064 0.79105042172787 0.8978782 0.61358625 prediction 0.404250282243613 Functional Gain - SLC30A6 ENSG00000152683 CDS Human protein_coding chr2:32422792 chr2:32422793 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_128742 0 0 1 0 1 SLC30A6 chr2:32422776 3'AG 32422776 Downstream 18bp
chr7 142564763 142564763 1 + C G LUAD 142564762 + 142564742 142564782 41 TATGGTTTCCAGGTGCGGGCCCGGACTGCTGCCGGCCACGG TATGGTTTCCAGGTGCGGGCCGGGACTGCTGCCGGCCACGG < 41bp 0.700292509692293 0.902413964889709 0.4129886 0.8055913 prediction 0.404242910394833 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142564762 chr7:142564763 nonsynonymous SNV 0.388 3 22 hm5C_associated_SNPs_128744 0 0 0 0 2 EPHB6 chr7:142564696 3'AG 142564696 Downstream 68bp
chr7 142564763 142564763 1 + C G LUAD 142564762 + 142564742 142564782 41 TATGGTTTCCAGGTGCGGGCCCGGACTGCTGCCGGCCACGG TATGGTTTCCAGGTGCGGGCCGGGACTGCTGCCGGCCACGG < 41bp 0.700292509692293 0.902413964889709 0.4129886 0.8055913 prediction 0.404242910394833 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142564762 chr7:142564763 nonsynonymous SNV 0.388 3 22 hm5C_associated_SNPs_128744 0 0 0 0 2 EPHB6 chr7:142564823 5'GT 142564823 Upstream 61bp
chr5 10262700 10262700 1 + T C DLBC 10262697 + 10262677 10262717 41 GGAGGGGCTGCTGAGATATCCTGTGCCCTGGCAGTTAGCCA GGAGGGGCTGCTGAGATATCCTGCGCCCTGGCAGTTAGCCA < 41bp 0.585729560776521 0.787850456275082 0.37185207 0.42366374 prediction 0.404241790997122 Functional Gain - CCT5 ENSG00000150753 CDS Human protein_coding chr5:10262697 chr5:10262700 synonymous SNV . 0 24 hm5C_associated_SNPs_128745 0 0 1 0 1 CCT5 chr5:10262730 5'GT 10262730 Upstream 31bp
chr9 34249921 34249921 1 + C A UCEC 34249920 + 34249900 34249940 41 GGCTACTCGTACGAGTGTGTCCTCAGAGCCATGAAGAAGAA GGCTACTCGTACGAGTGTGTCATCAGAGCCATGAAGAAGAA < 41bp 0.44793622268836 0.702120818549188 0.094319284 0.33816805 prediction 0.404241637098375 Functional Gain - UBAP1 ENSG00000165006 CDS Human protein_coding chr9:34249920 chr9:34249921 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_128746 0 0 1 0 1 UBAP1 chr9:34249959 5'GT 34249959 Upstream 39bp
chr8 87414410 87414410 1 + A G HNSC 87414407 + 87414387 87414427 41 ACACCAGCTCCAAAACCACTCGCATCTGAGCCTGCCGATGA ACACCAGCTCCAAAACCACTCGCGTCTGAGCCTGCCGATGA < 41bp 0.46498901288673 0.702119393587912 0.12249151 0.24402139 prediction 0.404238787175823 Functional Gain - WWP1 ENSG00000123124 CDS Human protein_coding chr8:87414407 chr8:87414410 synonymous SNV . 0 24 hm5C_associated_SNPs_128747 0 0 1 0 1 WWP1 chr8:87414432 5'GT 87414432 Upstream 23bp
chrX 15560290 15560290 1 + T A LUAD 15560288 + 15560268 15560308 41 GTCTGTGAAGGCATGGCCTTCTTGGAGAGTCACCAATTCAT GTCTGTGAAGGCATGGCCTTCTAGGAGAGTCACCAATTCAT < 41bp 0.493262215347812 0.702114186151901 0.12534645 0.34276563 prediction 0.404228372303802 Functional Gain - BMX ENSG00000102010 CDS Human protein_coding chrX:15560288 chrX:15560290 stopgain 0.999 1 23 hm5C_associated_SNPs_128749 0 0 0 0 1 BMX chrX:15560321 5'GT 15560321 Upstream 32bp
chr1 55172142 55172142 1 + T C UCEC 55172140 + 55172120 55172160 41 CGAGACAGCGCCTTCATATTCCTCAGCCAGAGCCTGGAGTA CGAGACAGCGCCTTCATATTCCCCAGCCAGAGCCTGGAGTA < 41bp 0.403033757935344 0.702087917859237 0.033205867 0.030301958 prediction 0.404175835718473 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55172140 chr1:55172142 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_128753 0 0 0 0 2 MROH7 chr1:55172108 3'AG 55172108 Downstream 35bp
chr1 55172142 55172142 1 + T C UCEC 55172140 + 55172120 55172160 41 CGAGACAGCGCCTTCATATTCCTCAGCCAGAGCCTGGAGTA CGAGACAGCGCCTTCATATTCCCCAGCCAGAGCCTGGAGTA < 41bp 0.403033757935344 0.702087917859237 0.033205867 0.030301958 prediction 0.404175835718473 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55172140 chr1:55172142 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_128753 0 0 0 0 2 MROH7 chr1:55172210 5'GT 55172210 Upstream 69bp
chr12 133294374 133294374 1 + C T COAD 133294373 + 133294353 133294393 41 CGCCCGTGTCTCATTGGAAGCCGGAAGCTGTGGTAAAAACC CGCCCGTGTCTCATTGGAAGCTGGAAGCTGTGGTAAAAACC < 41bp 0.615155806705014 0.817242788504844 0.7605984 0.35784525 prediction 0.40417396359966 Functional Gain - PGAM5 ENSG00000247077 CDS Human protein_coding chr12:133294373 chr12:133294374 nonsynonymous SNV 0.935 3 22 hm5C_associated_SNPs_128754 0 0 1 0 2 PGAM5 chr12:133294296 3'AG 133294296 Downstream 79bp
chr12 133294374 133294374 1 + C T COAD 133294373 + 133294353 133294393 41 CGCCCGTGTCTCATTGGAAGCCGGAAGCTGTGGTAAAAACC CGCCCGTGTCTCATTGGAAGCTGGAAGCTGTGGTAAAAACC < 41bp 0.615155806705014 0.817242788504844 0.7605984 0.35784525 prediction 0.40417396359966 Functional Gain - PGAM5 ENSG00000247077 CDS Human protein_coding chr12:133294373 chr12:133294374 nonsynonymous SNV 0.935 3 22 hm5C_associated_SNPs_128754 0 0 1 0 2 PGAM5 chr12:133294384 5'GT 133294384 Upstream 11bp
chr12 54396220 54396220 1 + C T GBM 54396219 + 54396199 54396239 41 TGTTTGGCCCTCCAGGCAACCCCGTGGCCAACTGGATTCAC TGTTTGGCCCTCCAGGCAACCTCGTGGCCAACTGGATTCAC < 41bp 0.622355699297448 0.82443665279937 0.26446742 0.44480008 prediction 0.404161907003844 Functional Gain - HOXC9 ENSG00000180806 CDS Human protein_coding chr12:54396219 chr12:54396220 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_128759 0 0 1 0 1 HOXC9 chr12:54396214 3'AG 54396214 Downstream 7bp
chr5 3601102 3601102 1 + T C HNSC 3601099 + 3601079 3601119 41 GCTGTGTTTCCCATGCAGCTCTCTGGCCCCGCAGGAGGGAA GCTGTGTTTCCCATGCAGCTCTCCGGCCCCGCAGGAGGGAA < 41bp 0.509500336327362 0.711578449532938 0.10356602 0.22202936 prediction 0.404156226411154 Functional Gain - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3601099 chr5:3601102 nonsynonymous SNV 0.982 2 24 hm5C_associated_SNPs_128760 0 0 0 0 1 IRX1 chr5:3601097 3'AG 3601097 Downstream 6bp
chr17 35295663 35295663 1 + C A rs35618899 35295662 + 35295642 35295682 41 TACTGCAAGAACGACTTCTTCCGGTGAGTACTTTCCTCCCA TACTGCAAGAACGACTTCTTCAGGTGAGTACTTTCCTCCCA < 41bp 0.652646540603148 0.854704575146607 0.3268896 0.8956562 prediction 0.404116069086918 Functional Gain - LHX1 ENSG00000132130 CDS Human other chr17:35295662 chr17:35295663 synonymous SNV . 0 22 hm5C_associated_SNPs_128765 0 0 0 0 1 LHX1 chr17:35295664 5'GT 35295664 Upstream 2bp
chr2 131103684 131103684 1 + C T SKCM 131103683 + 131103663 131103703 41 CAGGACGACTACATATCATTCCGGTGGGTCCACGGGCCATG CAGGACGACTACATATCATTCTGGTGGGTCCACGGGCCATG < 41bp 0.617522681535274 0.819579123417188 0.54263735 0.33818096 prediction 0.404112883763828 Functional Gain - IMP4 ENSG00000136718 CDS Human protein_coding chr2:131103683 chr2:131103684 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_128766 0 0 1 0 2 IMP4 chr2:131103591 3'AG 131103591 Downstream 94bp
chr2 131103684 131103684 1 + C T SKCM 131103683 + 131103663 131103703 41 CAGGACGACTACATATCATTCCGGTGGGTCCACGGGCCATG CAGGACGACTACATATCATTCTGGTGGGTCCACGGGCCATG < 41bp 0.617522681535274 0.819579123417188 0.54263735 0.33818096 prediction 0.404112883763828 Functional Gain - IMP4 ENSG00000136718 CDS Human protein_coding chr2:131103683 chr2:131103684 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_128766 0 0 1 0 2 IMP4 chr2:131103685 5'GT 131103685 Upstream 2bp
chr20 61290066 61290066 1 + C G rs144204634 61290062 + 61290042 61290082 41 AGCGGCCATCCTGGGCCCAGCTGCCGGCTACCTGATTGGAG AGCGGCCATCCTGGGCCCAGCTGCGGGCTACCTGATTGGAG < 41bp 0.397489889593119 0.702053271647997 0.21475321 0.26401415 prediction 0.404106543295995 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61290062 chr20:61290066 synonymous SNV . 0 25 hm5C_associated_SNPs_128768 0 0 1 0 2 SLCO4A1 chr20:61290029 3'AG 61290029 Downstream 38bp
chr20 61290066 61290066 1 + C G rs144204634 61290062 + 61290042 61290082 41 AGCGGCCATCCTGGGCCCAGCTGCCGGCTACCTGATTGGAG AGCGGCCATCCTGGGCCCAGCTGCGGGCTACCTGATTGGAG < 41bp 0.397489889593119 0.702053271647997 0.21475321 0.26401415 prediction 0.404106543295995 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61290062 chr20:61290066 synonymous SNV . 0 25 hm5C_associated_SNPs_128768 0 0 1 0 2 SLCO4A1 chr20:61290119 5'GT 61290119 Upstream 54bp
chr1 154233542 154233542 1 + C T UCEC 154233541 + 154233521 154233561 41 TGCCATACTATACAGGGGTCCCGGGCCTCCCCAGCACCTTC TGCCATACTATACAGGGGTCCTGGGCCTCCCCAGCACCTTC < 41bp 0.454295762185241 0.702048080763732 0.052731395 0.015625 prediction 0.404096161527464 Functional Gain - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154233541 chr1:154233542 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_128770 0 0 1 0 1 UBAP2L chr1:154233585 5'GT 154233585 Upstream 44bp
chr2 234372891 234372891 1 + C A COAD 234372890 + 234372870 234372910 41 CTCAGGAGGCTGGCAGACACCCCGTGGCTCTGCCAGTCCGC CTCAGGAGGCTGGCAGACACCACGTGGCTCTGCCAGTCCGC < 41bp 0.432129143059452 0.70204628342975 0.09086311 0.22985345 prediction 0.404092566859499 Functional Gain - DGKD ENSG00000077044 CDS Human protein_coding chr2:234372890 chr2:234372891 nonsynonymous SNV 0.791 0 22 hm5C_associated_SNPs_128771 0 0 1 0 2 DGKD chr2:234372810 3'AG 234372810 Downstream 82bp
chr2 234372891 234372891 1 + C A COAD 234372890 + 234372870 234372910 41 CTCAGGAGGCTGGCAGACACCCCGTGGCTCTGCCAGTCCGC CTCAGGAGGCTGGCAGACACCACGTGGCTCTGCCAGTCCGC < 41bp 0.432129143059452 0.70204628342975 0.09086311 0.22985345 prediction 0.404092566859499 Functional Gain - DGKD ENSG00000077044 CDS Human protein_coding chr2:234372890 chr2:234372891 nonsynonymous SNV 0.791 0 22 hm5C_associated_SNPs_128771 0 0 1 0 2 DGKD chr2:234372929 5'GT 234372929 Upstream 39bp
chr11 601608 601608 1 + C T SKCM 601607 + 601587 601627 41 AGTGCCGGGAAGAAAGAAAACCCCGTCCGGACCATCCGCAA AGTGCCGGGAAGAAAGAAAACTCCGTCCGGACCATCCGCAA < 41bp 0.442905618466787 0.702044298831228 0.041363478 0.0534437 prediction 0.404088597662456 Functional Gain - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:601607 chr11:601608 synonymous SNV . 0 22 hm5C_associated_SNPs_128772 0 0 1 0 2 PHRF1 chr11:601574 3'AG 601574 Downstream 35bp
chr11 601608 601608 1 + C T SKCM 601607 + 601587 601627 41 AGTGCCGGGAAGAAAGAAAACCCCGTCCGGACCATCCGCAA AGTGCCGGGAAGAAAGAAAACTCCGTCCGGACCATCCGCAA < 41bp 0.442905618466787 0.702044298831228 0.041363478 0.0534437 prediction 0.404088597662456 Functional Gain - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:601607 chr11:601608 synonymous SNV . 0 22 hm5C_associated_SNPs_128772 0 0 1 0 2 PHRF1 chr11:601701 5'GT 601701 Upstream 94bp
chr3 63805214 63805214 1 + C T rs114391175 63805213 + 63805193 63805233 41 TACAGAAAAGTTGGACAGTGCCGAAGATTCCAGCAACTCAA TACAGAAAAGTTGGACAGTGCTGAAGATTCCAGCAACTCAA < 41bp 0.562476850611112 0.764520831709791 0.10585779 0.07210255 prediction 0.404087962197358 Functional Gain - C3orf49 ENSG00000163632 CDS Human protein_coding chr3:63805213 chr3:63805214 stopgain 0.158 0 22 hm5C_associated_SNPs_128774 0 0 0 0 1 C3orf49 chr3:63805272 5'GT 63805272 Upstream 59bp
chr20 30661602 30661602 1 + C A UCEC 30661601 + 30661581 30661621 41 CTCAGCTTCCAGAAGGGGGACCAGATGGTGGTCCTAGAGGA CTCAGCTTCCAGAAGGGGGACAAGATGGTGGTCCTAGAGGA < 41bp 0.432651722409379 0.702040136199284 0.1464186 0.15721244 prediction 0.404080272398567 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30661601 chr20:30661602 nonsynonymous SNV 0.990 0 22 hm5C_associated_SNPs_128775 0 0 0 0 3 HCK chr20:30661519 3'AG 30661519 Downstream 84bp
chr20 30661602 30661602 1 + C A UCEC 30661601 + 30661581 30661621 41 CTCAGCTTCCAGAAGGGGGACCAGATGGTGGTCCTAGAGGA CTCAGCTTCCAGAAGGGGGACAAGATGGTGGTCCTAGAGGA < 41bp 0.432651722409379 0.702040136199284 0.1464186 0.15721244 prediction 0.404080272398567 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30661601 chr20:30661602 nonsynonymous SNV 0.990 0 22 hm5C_associated_SNPs_128775 0 0 0 0 3 HCK chr20:30661522 3'AG 30661522 Downstream 81bp
chr20 30661602 30661602 1 + C A UCEC 30661601 + 30661581 30661621 41 CTCAGCTTCCAGAAGGGGGACCAGATGGTGGTCCTAGAGGA CTCAGCTTCCAGAAGGGGGACAAGATGGTGGTCCTAGAGGA < 41bp 0.432651722409379 0.702040136199284 0.1464186 0.15721244 prediction 0.404080272398567 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30661601 chr20:30661602 nonsynonymous SNV 0.990 0 22 hm5C_associated_SNPs_128775 0 0 0 0 3 HCK chr20:30661621 5'GT 30661621 Upstream 20bp
chr19 4210358 4210358 1 + A G LIHC 4210355 + 4210335 4210375 41 GCCTGGAACAGCACAAGGAACGGAGGCAGCAGGAGGTTAGG GCCTGGAACAGCACAAGGAACGGGGGCAGCAGGAGGTTAGG < 41bp 0.627283718292958 0.829318912767899 0.8948102 0.9132299 prediction 0.404070388949883 Functional Gain - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4210355 chr19:4210358 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_128778 0 0 0 0 2 ANKRD24 chr19:4210262 3'AG 4210262 Downstream 97bp
chr19 4210358 4210358 1 + A G LIHC 4210355 + 4210335 4210375 41 GCCTGGAACAGCACAAGGAACGGAGGCAGCAGGAGGTTAGG GCCTGGAACAGCACAAGGAACGGGGGCAGCAGGAGGTTAGG < 41bp 0.627283718292958 0.829318912767899 0.8948102 0.9132299 prediction 0.404070388949883 Functional Gain - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4210355 chr19:4210358 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_128778 0 0 0 0 2 ANKRD24 chr19:4210369 5'GT 4210369 Upstream 12bp
chr3 171965350 171965350 1 + C T STAD 171965349 + 171965329 171965369 41 GAAGATAGTACTGGAGTCCGCCGGGTGGTGGTCACACCCCA GAAGATAGTACTGGAGTCCGCTGGGTGGTGGTCACACCCCA < 41bp 0.579328750010484 0.781362294324672 0.8784342 0.78512216 prediction 0.404067088628375 Functional Gain - FNDC3B ENSG00000075420 CDS Human protein_coding chr3:171965349 chr3:171965350 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_128779 0 0 1 0 1 FNDC3B chr3:171965323 3'AG 171965323 Downstream 28bp
chr2 231327184 231327184 1 + C A rs35985492 231327180 + 231327160 231327200 41 TGAGGACTCTGAAGGATCCACTGACGTTGATGAGCCCTTAG TGAGGACTCTGAAGGATCCACTGAAGTTGATGAGCCCTTAG < 41bp 0.294861273515857 0.702031484460876 0.15009838 0.2184676 prediction 0.404062968921751 Functional Gain - SP100 ENSG00000067066 CDS Human protein_coding chr2:231327180 chr2:231327184 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_128780 0 0 1 0 2 SP100 chr2:231327150 3'AG 231327150 Downstream 35bp
chr2 231327184 231327184 1 + C A rs35985492 231327180 + 231327160 231327200 41 TGAGGACTCTGAAGGATCCACTGACGTTGATGAGCCCTTAG TGAGGACTCTGAAGGATCCACTGAAGTTGATGAGCCCTTAG < 41bp 0.294861273515857 0.702031484460876 0.15009838 0.2184676 prediction 0.404062968921751 Functional Gain - SP100 ENSG00000067066 CDS Human protein_coding chr2:231327180 chr2:231327184 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_128780 0 0 1 0 2 SP100 chr2:231327233 5'GT 231327233 Upstream 50bp
chr19 4941932 4941932 1 + C A rs17883422 4941928 + 4941908 4941948 41 CCCGCCCCTCAGCAGTGTTCCCAGCGAGGACGAGTGGTGAG CCCGCCCCTCAGCAGTGTTCCCAGAGAGGACGAGTGGTGAG < 41bp 0.295085246052147 0.702031107945248 0.25080693 0.42263824 prediction 0.404062215890497 Functional Gain - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4941928 chr19:4941932 . 0.003 0 25 hm5C_associated_SNPs_128781 0 0 1 0 2 UHRF1 chr19:4941920 3'AG 4941920 Downstream 13bp
chr19 4941932 4941932 1 + C A rs17883422 4941928 + 4941908 4941948 41 CCCGCCCCTCAGCAGTGTTCCCAGCGAGGACGAGTGGTGAG CCCGCCCCTCAGCAGTGTTCCCAGAGAGGACGAGTGGTGAG < 41bp 0.295085246052147 0.702031107945248 0.25080693 0.42263824 prediction 0.404062215890497 Functional Gain - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4941928 chr19:4941932 . 0.003 0 25 hm5C_associated_SNPs_128781 0 0 1 0 2 UHRF1 chr19:4941943 5'GT 4941943 Upstream 12bp
chr1 227968263 227968263 1 + C G rs117271761 227968262 + 227968242 227968282 41 GAAGGGGCTGGCCCTGGAGGCCGAGAGTGAGCTGGAGAGAC GAAGGGGCTGGCCCTGGAGGCGGAGAGTGAGCTGGAGAGAC < 41bp 0.380980877101973 0.702030521333146 0.6900935 0.9043411 prediction 0.404061042666292 Functional Gain - SNAP47 ENSG00000143740 CDS Human protein_coding chr1:227968262 chr1:227968263 synonymous SNV . 0 22 hm5C_associated_SNPs_128782 0 0 1 0 1 SNAP47 chr1:227968228 3'AG 227968228 Downstream 36bp
chr20 44462536 44462536 1 + C T rs191573187 44462535 + 44462515 44462555 41 GCGGGGGGCTGCACCCGGACCCCTGGGGCGCGGCGCGCCCC GCGGGGGGCTGCACCCGGACCTCTGGGGCGCGGCGCGCCCC < 41bp 0.517935212110864 0.719965371458465 0.24145368 0.51165134 prediction 0.404060318695202 Functional Gain - SNX21 ENSG00000124104 UTR5 Human protein_coding chr20:44462535 chr20:44462536 . . 0 22 hm5C_associated_SNPs_128783 0 0 0 0 1 SNX21 chr20:44462579 5'GT 44462579 Upstream 44bp
chr17 63221121 63221121 1 + C T STAD 63221120 + 63221100 63221140 41 TCTCCTTTCCTTCTCTACAGCCGGGCCAGCACATGGCTCCC TCTCCTTTCCTTCTCTACAGCTGGGCCAGCACATGGCTCCC < 41bp 0.577801219820965 0.779828701699557 0.37085792 0.120572954 prediction 0.404054963757186 Functional Gain - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63221120 chr17:63221121 nonsynonymous SNV 0.914 0 22 hm5C_associated_SNPs_128785 0 0 0 0 1 RGS9 chr17:63221120 3'AG 63221120 Downstream 2bp
chr5 33457407 33457407 1 + C T STAD 33457406 + 33457386 33457426 41 AAAGCAGATATGGAGACTCTCCAGAGAATTTATGGCATTTC AAAGCAGATATGGAGACTCTCTAGAGAATTTATGGCATTTC < 41bp 0.63671387112036 0.838738899257282 0.522401 0.26364252 prediction 0.404050056273844 Functional Gain - TARS ENSG00000113407 CDS Human protein_coding chr5:33457406 chr5:33457407 stopgain 0.980 1 22 hm5C_associated_SNPs_128789 0 0 1 0 1 TARS chr5:33457362 3'AG 33457362 Downstream 46bp
chr6 33177831 33177831 1 + C T UCEC 33177830 + 33177810 33177850 41 CATCAAGACCGAGTGCTTATCCGCCTGAGCCGCCTGCACAA CATCAAGACCGAGTGCTTATCTGCCTGAGCCGCCTGCACAA < 41bp 0.571313929613839 0.773324776703497 0.24625054 0.14228833 prediction 0.404021694179317 Functional Gain - RING1 ENSG00000204227 CDS Human protein_coding chr6:33177830 chr6:33177831 nonsynonymous SNV 0.955 5 22 hm5C_associated_SNPs_128796 0 0 1 0 1 RING1 chr6:33177907 5'GT 33177907 Upstream 77bp
chr8 23115565 23115565 1 + C T HNSC 23115564 + 23115544 23115584 41 AGGTGTAAAGAAGAAGCCCGCCGGGCATGCCGAGCAGGAAA AGGTGTAAAGAAGAAGCCCGCTGGGCATGCCGAGCAGGAAA < 41bp 0.44897573368747 0.702009164826216 0.39188674 0.2562877 prediction 0.404018329652431 Functional Gain - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23115564 chr8:23115565 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_128797 0 0 1 0 2 CHMP7 chr8:23115546 3'AG 23115546 Downstream 20bp
chr8 23115565 23115565 1 + C T HNSC 23115564 + 23115544 23115584 41 AGGTGTAAAGAAGAAGCCCGCCGGGCATGCCGAGCAGGAAA AGGTGTAAAGAAGAAGCCCGCTGGGCATGCCGAGCAGGAAA < 41bp 0.44897573368747 0.702009164826216 0.39188674 0.2562877 prediction 0.404018329652431 Functional Gain - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23115564 chr8:23115565 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_128797 0 0 1 0 2 CHMP7 chr8:23115594 5'GT 23115594 Upstream 30bp
chr3 89156969 89156969 1 + C T UCEC 89156968 + 89156948 89156988 41 ACAGCTTCGGGGAACTGATTCCGCAGCCTTCCAATGAAGGT ACAGCTTCGGGGAACTGATTCTGCAGCCTTCCAATGAAGGT < 41bp 0.478710132944764 0.702003591009225 0.8358096 0.27007806 prediction 0.40400718201845 Functional Gain - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89156968 chr3:89156969 nonsynonymous SNV 0.202 0 22 hm5C_associated_SNPs_128802 0 0 0 0 1 EPHA3 chr3:89156986 5'GT 89156986 Upstream 18bp
chrX 79281158 79281158 1 + T A HNSC 79281156 + 79281136 79281176 41 GGGAATACAGACCATTTGTGCATCATTCCTAGATTCTATGT GGGAATACAGACCATTTGTGCAACATTCCTAGATTCTATGT < 41bp 0.542490660557252 0.744493800761038 0.035019547 0.031737477 prediction 0.404006280407572 Functional Gain - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79281156 chrX:79281158 nonsynonymous SNV 0.026 5 23 hm5C_associated_SNPs_128803 0 0 0 0 1 TBX22 chrX:79281102 3'AG 79281102 Downstream 57bp
chr5 75505594 75505594 1 + C A UCEC 75505590 + 75505570 75505610 41 AGCCATACCCACTGTGTTCTCGTACTTTGCTGAAGTCCTGG AGCCATACCCACTGTGTTCTCGTAATTTGCTGAAGTCCTGG < 41bp 0.298394249214506 0.701999287818828 0.45577106 0.5323503 prediction 0.403998575637656 Functional Gain - SV2C ENSG00000122012 CDS Human protein_coding chr5:75505590 chr5:75505594 stopgain 0.980 1 25 hm5C_associated_SNPs_128807 0 0 0 0 1 SV2C chr5:75505561 3'AG 75505561 Downstream 34bp
chr9 2181597 2181597 1 + T C LIHC 2181595 + 2181575 2181615 41 GGGCGACAGCTCAGTGAAGTCTTCATTCAGTTACCTTCAAG GGGCGACAGCTCAGTGAAGTCTCCATTCAGTTACCTTCAAG < 41bp 0.399744217506357 0.701996775259677 0.29885897 0.9733044 prediction 0.403993550519353 Functional Gain - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2181595 chr9:2181597 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_128808 0 0 0 0 2 SMARCA2 chr9:2181571 3'AG 2181571 Downstream 27bp
chr9 2181597 2181597 1 + T C LIHC 2181595 + 2181575 2181615 41 GGGCGACAGCTCAGTGAAGTCTTCATTCAGTTACCTTCAAG GGGCGACAGCTCAGTGAAGTCTCCATTCAGTTACCTTCAAG < 41bp 0.399744217506357 0.701996775259677 0.29885897 0.9733044 prediction 0.403993550519353 Functional Gain - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2181595 chr9:2181597 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_128808 0 0 0 0 2 SMARCA2 chr9:2181676 5'GT 2181676 Upstream 80bp
chr18 56819782 56819782 1 + C T SKCM 56819781 + 56819761 56819801 41 TTTCCAGTGGCAGTATGGAGCCGGCCTTTCACAGAGGAGAC TTTCCAGTGGCAGTATGGAGCTGGCCTTTCACAGAGGAGAC < 41bp 0.462150293860798 0.701989804079912 0.0505338 0.06504035 prediction 0.403979608159825 Functional Gain - SEC11C ENSG00000166562 CDS Human protein_coding chr18:56819781 chr18:56819782 nonsynonymous SNV 0.990 3 22 hm5C_associated_SNPs_128810 0 0 1 0 1 SEC11C chr18:56819768 3'AG 56819768 Downstream 15bp
chr7 17379818 17379818 1 + C T GBM 17379817 + 17379797 17379837 41 TGGGTCAGATGCAGTACAATCCAGTACTGCCAGGCCAACAG TGGGTCAGATGCAGTACAATCTAGTACTGCCAGGCCAACAG < 41bp 0.459294599614762 0.701980694023324 0.51522774 0.26502997 prediction 0.403961388046648 Functional Gain - AHR ENSG00000106546 CDS Human protein_coding chr7:17379817 chr7:17379818 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_128811 0 0 1 0 1 AHR chr7:17379852 5'GT 17379852 Upstream 35bp
chr8 133883736 133883736 1 + T G THCA 133883732 + 133883712 133883752 41 GATGTGCAGCAGGTCCAGTGCTGGTGTGTGGACGCAGAGGG GATGTGCAGCAGGTCCAGTGCTGGGGTGTGGACGCAGAGGG < 41bp 0.554610469199548 0.756591105616361 0.33625257 0.4094369 prediction 0.403961272833627 Functional Gain - TG ENSG00000042832 CDS Human protein_coding chr8:133883732 chr8:133883736 nonsynonymous SNV 0.974 5 25 hm5C_associated_SNPs_128812 0 0 0 0 1 TG chr8:133883796 5'GT 133883796 Upstream 61bp
chr22 42095644 42095644 1 + C A rs200066340 42095640 + 42095620 42095660 41 GGCCCATTACCGGCACGACCCGCGCTGGCTGCTGCCCGTGA GGCCCATTACCGGCACGACCCGCGATGGCTGCTGCCCGTGA < 41bp 0.732628486180563 0.934603400927567 0.51895833 0.8967187 prediction 0.403949829494008 Functional Gain - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42095640 chr22:42095644 synonymous SNV . 0 25 hm5C_associated_SNPs_128815 0 0 0 0 1 MEI1 chr22:42095716 5'GT 42095716 Upstream 73bp
chr17 59557600 59557600 1 + C A rs3744438 59557596 + 59557576 59557616 41 AGAACGGGGCACACTCACAGCTCGCGGAGCCGCAGGACCTG AGAACGGGGCACACTCACAGCTCGAGGAGCCGCAGGACCTG < 41bp 0.748925387897713 0.950899343163201 0.19761854 0.31018233 prediction 0.403947910530975 Functional Gain - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59557596 chr17:59557600 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_128816 0 0 0 0 1 TBX4 chr17:59557680 5'GT 59557680 Upstream 81bp
chr5 176863243 176863243 1 + C T STAD 176863242 + 176863222 176863262 41 GGAGGTCCCCGAGGAGTATTCCGAGCGCTTTTCCCCGCAGG GGAGGTCCCCGAGGAGTATTCTGAGCGCTTTTCCCCGCAGG < 41bp 0.612177132239788 0.8141465774414 0.90253204 0.85219234 prediction 0.403938890403224 Functional Gain - GRK6 ENSG00000198055 CDS Human protein_coding chr5:176863242 chr5:176863243 synonymous SNV . 0 22 hm5C_associated_SNPs_128819 0 0 1 0 1 GRK6 chr5:176863282 5'GT 176863282 Upstream 40bp
chrX 52658021 52658021 1 + C T rs782577044 52658020 + 52658000 52658040 41 AGCTGGCCTCTCTTCTGTTACCGGGGCCACTCCCATGGCTT AGCTGGCCTCTCTTCTGTTACTGGGGCCACTCCCATGGCTT < 41bp 0.557291127967522 0.759255979483318 0.9491529 0.9066988 prediction 0.403929703031591 Functional Gain - SSX8 ENSG00000157965 ncRNA_exonic Human unprocessed_pseudogene chrX:52658020 chrX:52658021 . . 0 22 hm5C_associated_SNPs_128821 0 0 0 1 1 SSX8 chrX:52657992 3'AG 52657992 Downstream 30bp
chr22 31524046 31524046 1 + C T UCEC 31524045 + 31524025 31524065 41 CATCAGCTCTGGGAGAAGGACCAGGTGGGGTCCTTGTCCCC CATCAGCTCTGGGAGAAGGACTAGGTGGGGTCCTTGTCCCC < 41bp 0.445074325078085 0.701963470010638 0.36627686 0.3431933 prediction 0.403926940021276 Functional Gain - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31524045 chr22:31524046 stopgain 0.993 1 22 hm5C_associated_SNPs_128822 0 0 0 0 1 INPP5J chr22:31524048 5'GT 31524048 Upstream 3bp
chr8 36767024 36767024 1 + T C rs28608091 36767021 + 36767001 36767041 41 TACAGAGAGAATGGCGATTTCTCTGGAATTTTCCCCAGATA TACAGAGAGAATGGCGATTTCTCCGGAATTTTCCCCAGATA < 41bp 0.47228674335314 0.701961439518651 0.12525919 0.22737256 prediction 0.403922879037302 Functional Gain - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36767021 chr8:36767024 nonsynonymous SNV 0.124 0 24 hm5C_associated_SNPs_128823 0 0 0 0 1 KCNU1 chr8:36767053 5'GT 36767053 Upstream 30bp
chr7 63720657 63720657 1 + T A LUAD 63720655 + 63720635 63720675 41 TCTCTGGAGGAGTGGCAATGCCTGGATCACGCTCAGCAGAA TCTCTGGAGGAGTGGCAATGCCAGGATCACGCTCAGCAGAA < 41bp 0.550359130204632 0.752317386263502 0.096134156 0.3376136 prediction 0.40391651211774 Functional Gain - ZNF679 ENSG00000197123 CDS Human protein_coding chr7:63720655 chr7:63720657 nonsynonymous SNV 0.024 3 23 hm5C_associated_SNPs_128825 0 0 0 0 2 ZNF679 chr7:63720599 3'AG 63720599 Downstream 59bp
chr7 63720657 63720657 1 + T A LUAD 63720655 + 63720635 63720675 41 TCTCTGGAGGAGTGGCAATGCCTGGATCACGCTCAGCAGAA TCTCTGGAGGAGTGGCAATGCCAGGATCACGCTCAGCAGAA < 41bp 0.550359130204632 0.752317386263502 0.096134156 0.3376136 prediction 0.40391651211774 Functional Gain - ZNF679 ENSG00000197123 CDS Human protein_coding chr7:63720655 chr7:63720657 nonsynonymous SNV 0.024 3 23 hm5C_associated_SNPs_128825 0 0 0 0 2 ZNF679 chr7:63720725 5'GT 63720725 Upstream 69bp
chr3 8775586 8775586 1 + T A LUAD 8775582 + 8775562 8775602 41 GATGATGGCAGAAGAGCACACAGATCTCGAGGCCCAGATCG GATGATGGCAGAAGAGCACACAGAACTCGAGGCCCAGATCG < 41bp 0.675631087450247 0.877587851371268 0.036181927 0.14132959 prediction 0.40391352784204 Functional Gain - CAV3 ENSG00000182533 CDS Human protein_coding chr3:8775582 chr3:8775586 nonsynonymous SNV 0.977 1 25 hm5C_associated_SNPs_128826 0 0 0 0 1 CAV3 chr3:8775676 5'GT 8775676 Upstream 91bp
chr12 6575091 6575091 1 + C G LIHC 6575088 + 6575068 6575108 41 TGCTCCTGCCTGCAAGGCATCAGCTCGGTCATCCAGCTCTG TGCTCCTGCCTGCAAGGCATCAGGTCGGTCATCCAGCTCTG < 41bp 0.495044217629388 0.701954237761129 0.2330642 0.90292203 prediction 0.403908475522257 Functional Gain - VAMP1 ENSG00000139190 CDS Human protein_coding chr12:6575088 chr12:6575091 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_128829 0 0 0 0 1 VAMP1 chr12:6575041 3'AG 6575041 Downstream 51bp
chr19 580412 580412 1 + C A UCEC 580411 + 580391 580431 41 CGACCAGTGGGGAGAGTACTCCTGCGTCTTCCTCCCCGAGC CGACCAGTGGGGAGAGTACTCATGCGTCTTCCTCCCCGAGC < 41bp 0.432712988555387 0.701953545863074 0.29670662 0.48566058 prediction 0.403907091726149 Functional Gain - BSG ENSG00000172270 CDS Human protein_coding chr19:580411 chr19:580412 synonymous SNV . 0 22 hm5C_associated_SNPs_128831 0 0 1 0 1 BSG chr19:580461 5'GT 580461 Upstream 50bp
chr22 38084910 38084910 1 + T C rs61737838 38084907 + 38084887 38084927 41 CAGCAAAGACGGAGTCGGTGCAGTATGACCACCCCAACCAC CAGCAAAGACGGAGTCGGTGCAGCATGACCACCCCAACCAC < 41bp 0.557414638918384 0.759366792740327 0.050558716 0.04952687 prediction 0.403904307643886 Functional Gain - NOL12 ENSG00000100101 CDS Human protein_coding chr22:38084907 chr22:38084910 nonsynonymous SNV 0.980 5 24 hm5C_associated_SNPs_128832 0 0 1 0 2 NOL12 chr22:38084857 3'AG 38084857 Downstream 54bp
chr22 38084910 38084910 1 + T C rs61737838 38084907 + 38084887 38084927 41 CAGCAAAGACGGAGTCGGTGCAGTATGACCACCCCAACCAC CAGCAAAGACGGAGTCGGTGCAGCATGACCACCCCAACCAC < 41bp 0.557414638918384 0.759366792740327 0.050558716 0.04952687 prediction 0.403904307643886 Functional Gain - NOL12 ENSG00000100101 CDS Human protein_coding chr22:38084907 chr22:38084910 nonsynonymous SNV 0.980 5 24 hm5C_associated_SNPs_128832 0 0 1 0 2 NOL12 chr22:38084999 5'GT 38084999 Upstream 90bp
chr2 179209024 179209024 1 + C A UCEC 179209020 + 179209000 179209040 41 CATTCACCGTCAGGAAGGGCCACCCGCGAAGGGCCAGTTCA CATTCACCGTCAGGAAGGGCCACCAGCGAAGGGCCAGTTCA < 41bp 0.297522967586791 0.701952102019032 0.015690058 0.062107205 prediction 0.403904204038064 Functional Gain - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179209020 chr2:179209024 synonymous SNV . 0 25 hm5C_associated_SNPs_128833 0 0 0 0 2 OSBPL6 chr2:179209013 3'AG 179209013 Downstream 12bp
chr2 179209024 179209024 1 + C A UCEC 179209020 + 179209000 179209040 41 CATTCACCGTCAGGAAGGGCCACCCGCGAAGGGCCAGTTCA CATTCACCGTCAGGAAGGGCCACCAGCGAAGGGCCAGTTCA < 41bp 0.297522967586791 0.701952102019032 0.015690058 0.062107205 prediction 0.403904204038064 Functional Gain - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179209020 chr2:179209024 synonymous SNV . 0 25 hm5C_associated_SNPs_128833 0 0 0 0 2 OSBPL6 chr2:179209087 5'GT 179209087 Upstream 64bp
chr19 17886905 17886905 1 + C A HNSC 17886901 + 17886881 17886921 41 CCGGCCCGGGCTCCAGCCTGCAGCCCCGAGGCAGCAGCGGC CCGGCCCGGGCTCCAGCCTGCAGCACCGAGGCAGCAGCGGC < 41bp 0.293527139887714 0.70194702875895 0.15018806 0.11393845 prediction 0.4038940575179 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17886901 chr19:17886905 nonsynonymous SNV 0.237 0 25 hm5C_associated_SNPs_128835 0 0 0 0 1 FCHO1 chr19:17886970 5'GT 17886970 Upstream 66bp
chr2 74432916 74432916 1 + C A LGG 74432915 + 74432895 74432935 41 GGAGGTAGAAGAGTGGGTGGCCTCAGGCAACAAACGGCCAC GGAGGTAGAAGAGTGGGTGGCATCAGGCAACAAACGGCCAC < 41bp 0.510285277733136 0.712229225152361 0.48602366 0.64307445 prediction 0.40388789483845 Functional Gain - MTHFD2 ENSG00000065911 CDS Human protein_coding chr2:74432915 chr2:74432916 synonymous SNV . 0 22 hm5C_associated_SNPs_128839 0 0 1 0 1 MTHFD2 chr2:74432832 3'AG 74432832 Downstream 85bp
chr16 68104927 68104927 1 + C T SKCM 68104926 + 68104906 68104946 41 AGCCTCTTCCGTGATGGTGGCCCGAGCAGCCATGTGGAACC AGCCTCTTCCGTGATGGTGGCTCGAGCAGCCATGTGGAACC < 41bp 0.664305935908665 0.866244746631108 0.15460864 0.23393813 prediction 0.403877621444886 Functional Gain - DUS2 ENSG00000167264 CDS Human protein_coding chr16:68104926 chr16:68104927 synonymous SNV . 0 22 hm5C_associated_SNPs_128842 0 0 0 0 2 DUS2 chr16:68104843 3'AG 68104843 Downstream 85bp
chr16 68104927 68104927 1 + C T SKCM 68104926 + 68104906 68104946 41 AGCCTCTTCCGTGATGGTGGCCCGAGCAGCCATGTGGAACC AGCCTCTTCCGTGATGGTGGCTCGAGCAGCCATGTGGAACC < 41bp 0.664305935908665 0.866244746631108 0.15460864 0.23393813 prediction 0.403877621444886 Functional Gain - DUS2 ENSG00000167264 CDS Human protein_coding chr16:68104926 chr16:68104927 synonymous SNV . 0 22 hm5C_associated_SNPs_128842 0 0 0 0 2 DUS2 chr16:68105011 5'GT 68105011 Upstream 85bp
chr19 37288619 37288619 1 + C G rs78181802 37288618 + 37288598 37288638 41 ACTGGGACTCGGGCTGCGTCCCGGCCCTTCCACATCGGTCC ACTGGGACTCGGGCTGCGTCCGGGCCCTTCCACATCGGTCC < 41bp 0.678200519675596 0.880139265660403 0.076699406 0.8194236 prediction 0.403877491969614 Functional Gain - ZNF790-AS1 ENSG00000267254 ncRNA_exonic Human antisense chr19:37288618 chr19:37288619 . . 0 22 hm5C_associated_SNPs_128843 0 0 1 0 1 ZNF790-AS1 chr19:37288713 5'GT 37288713 Upstream 95bp
chr19 39760263 39760263 1 + C G rs199706890 39760259 + 39760239 39760279 41 CACACCCTGCACCATATCCTCTCCCAGTTCCGGGCCTGTGT CACACCCTGCACCATATCCTCTCCGAGTTCCGGGCCTGTGT < 41bp 0.408350785564073 0.70193848255723 0.22611621 0.35568127 prediction 0.40387696511446 Functional Gain - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39760259 chr19:39760263 nonsynonymous SNV 0.993 0 25 hm5C_associated_SNPs_128844 0 0 0 0 1 IFNL2 chr19:39760277 5'GT 39760277 Upstream 15bp
chr19 30934557 30934557 1 + T C UCEC 30934554 + 30934534 30934574 41 GTGGCCCCGTCCTCAACGGCCAGTATGCCATGAGTCAGAAG GTGGCCCCGTCCTCAACGGCCAGCATGCCATGAGTCAGAAG < 41bp 0.512780407997097 0.714718888421903 0.1763263 0.106794596 prediction 0.403876960849611 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30934554 chr19:30934557 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_128845 0 0 1 0 1 ZNF536 chr19:30934468 3'AG 30934468 Downstream 90bp
chr11 22363249 22363249 1 + C A GBM 22363248 + 22363228 22363268 41 TTCTGCATCTCCTTCGGTATCCGCTGCAACCTGGGCGTGGC TTCTGCATCTCCTTCGGTATCAGCTGCAACCTGGGCGTGGC < 41bp 0.648516915357315 0.850453457220625 0.07191479 0.34323478 prediction 0.403873083726621 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22363248 chr11:22363249 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_128846 0 0 0 0 1 SLC17A6 chr11:22363326 5'GT 22363326 Upstream 78bp
chr4 103500113 103500113 1 + T G STAD 103500111 + 103500091 103500131 41 GACCTCAGCGTGGTGCGGCTCATGTTTACAGCTTTTCTTCC GACCTCAGCGTGGTGCGGCTCAGGTTTACAGCTTTTCTTCC < 41bp 0.342227006120048 0.701927982313721 0.15745285 0.83669984 prediction 0.403855964627442 Functional Gain - NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103500111 chr4:103500113 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_128850 0 0 1 0 2 NFKB1 chr4:103500038 3'AG 103500038 Downstream 76bp
chr4 103500113 103500113 1 + T G STAD 103500111 + 103500091 103500131 41 GACCTCAGCGTGGTGCGGCTCATGTTTACAGCTTTTCTTCC GACCTCAGCGTGGTGCGGCTCAGGTTTACAGCTTTTCTTCC < 41bp 0.342227006120048 0.701927982313721 0.15745285 0.83669984 prediction 0.403855964627442 Functional Gain - NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103500111 chr4:103500113 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_128850 0 0 1 0 2 NFKB1 chr4:103500196 5'GT 103500196 Upstream 84bp
chr6 137191098 137191098 1 + T C UCEC 137191095 + 137191075 137191115 41 CTTAAGGAATGTACGACAACCAGTGTTTGAACTTCTTGGTC CTTAAGGAATGTACGACAACCAGCGTTTGAACTTCTTGGTC < 41bp 0.539455254419811 0.741377088346192 0.15180966 0.30984318 prediction 0.403843667852763 Functional Gain - PEX7 ENSG00000112357 CDS Human protein_coding chr6:137191095 chr6:137191098 nonsynonymous SNV 0.988 0 24 hm5C_associated_SNPs_128852 0 0 1 2 2 PEX7 chr6:137191028 3'AG 137191028 Downstream 71bp
chr6 137191098 137191098 1 + T C UCEC 137191095 + 137191075 137191115 41 CTTAAGGAATGTACGACAACCAGTGTTTGAACTTCTTGGTC CTTAAGGAATGTACGACAACCAGCGTTTGAACTTCTTGGTC < 41bp 0.539455254419811 0.741377088346192 0.15180966 0.30984318 prediction 0.403843667852763 Functional Gain - PEX7 ENSG00000112357 CDS Human protein_coding chr6:137191095 chr6:137191098 nonsynonymous SNV 0.988 0 24 hm5C_associated_SNPs_128852 0 0 1 2 2 PEX7 chr6:137191141 5'GT 137191141 Upstream 44bp
chr2 177017342 177017342 1 + C T GBM 177017341 + 177017321 177017361 41 TGTTTTGTCTCGCAGTGAACCCCAACTACACCGGTGGGGAA TGTTTTGTCTCGCAGTGAACCTCAACTACACCGGTGGGGAA < 41bp 0.624702373108643 0.826623610171988 0.33382705 0.55085844 prediction 0.403842474126689 Functional Gain - HOXD4 ENSG00000170166 CDS Human protein_coding chr2:177017341 chr2:177017342 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_128853 0 0 0 0 1 HOXD4 chr2:177017336 3'AG 177017336 Downstream 7bp
chr1 203472684 203472684 1 + C T LGG 203472683 + 203472663 203472703 41 ATGTGTTCTTCCCAGAATAACCTGATAGAGACCATGCAGAG ATGTGTTCTTCCCAGAATAACTTGATAGAGACCATGCAGAG < 41bp 0.446195387310942 0.701918286822983 0.054619312 0.04878533 prediction 0.403836573645966 Functional Gain - OPTC ENSG00000188770 CDS Human protein_coding chr1:203472683 chr1:203472684 synonymous SNV . 0 22 hm5C_associated_SNPs_128854 0 0 0 0 1 OPTC chr1:203472678 3'AG 203472678 Downstream 7bp
chr1 119934802 119934802 1 + C T COAD 119934801 + 119934781 119934821 41 GTCTACCTGGATGGCGGGGTCCGAACTGGCAATGATGTGCT GTCTACCTGGATGGCGGGGTCTGAACTGGCAATGATGTGCT < 41bp 0.638468478622983 0.840379994796277 0.253195 0.6211763 prediction 0.403823032346589 Functional Gain - HAO2 ENSG00000116882 CDS Human protein_coding chr1:119934801 chr1:119934802 stopgain 0.997 1 22 hm5C_associated_SNPs_128858 0 0 0 0 2 HAO2 chr1:119934733 3'AG 119934733 Downstream 70bp
chr1 119934802 119934802 1 + C T COAD 119934801 + 119934781 119934821 41 GTCTACCTGGATGGCGGGGTCCGAACTGGCAATGATGTGCT GTCTACCTGGATGGCGGGGTCTGAACTGGCAATGATGTGCT < 41bp 0.638468478622983 0.840379994796277 0.253195 0.6211763 prediction 0.403823032346589 Functional Gain - HAO2 ENSG00000116882 CDS Human protein_coding chr1:119934801 chr1:119934802 stopgain 0.997 1 22 hm5C_associated_SNPs_128858 0 0 0 0 2 HAO2 chr1:119934891 5'GT 119934891 Upstream 90bp
chr1 55145674 55145674 1 + C T BRCA 55145673 + 55145653 55145693 41 CCTGGCTAGCTCCTTCATGACCGAGGTTGTGGTGGCCCTGC CCTGGCTAGCTCCTTCATGACTGAGGTTGTGGTGGCCCTGC < 41bp 0.60011905900317 0.802026788522613 0.24232829 0.18428952 prediction 0.403815459038886 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55145673 chr1:55145674 synonymous SNV . 0 22 hm5C_associated_SNPs_128860 0 0 0 0 1 MROH7 chr1:55145718 5'GT 55145718 Upstream 45bp
chr4 55564680 55564680 1 + C A GBM 55564679 + 55564659 55564699 41 TGTCTGCATTGTTCTGTGGACCAGGAGGGCAAGTCAGTGCT TGTCTGCATTGTTCTGTGGACAAGGAGGGCAAGTCAGTGCT < 41bp 0.429435761723032 0.701890481067742 0.21043557 0.45048434 prediction 0.403780962135484 Functional Gain - KIT ENSG00000157404 CDS Human protein_coding chr4:55564679 chr4:55564680 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_128867 0 0 1 0 1 KIT chr4:55564731 5'GT 55564731 Upstream 52bp
chr7 98990326 98990326 1 + T C LIHC 98990323 + 98990303 98990343 41 TGCTTCCCGGTGCTGTTCACCTATGACGCCGCCGCGGGGAT TGCTTCCCGGTGCTGTTCACCTACGACGCCGCCGCGGGGAT < 41bp 0.495464019320182 0.701886830499566 0.100358844 0.07645619 prediction 0.403773660999132 Functional Gain - ARPC1B ENSG00000130429 CDS Human protein_coding chr7:98990323 chr7:98990326 synonymous SNV . 0 24 hm5C_associated_SNPs_128869 0 0 1 0 1 ARPC1B chr7:98990294 3'AG 98990294 Downstream 33bp
chr10 106152126 106152126 1 + T C STAD 106152123 + 106152103 106152143 41 CTGTGAGATCAGACAGAAATCTGTATAGCAAAAATCTGGTT CTGTGAGATCAGACAGAAATCTGCATAGCAAAAATCTGGTT < 41bp 0.573791289567389 0.775675504671079 0.24114683 0.25959677 prediction 0.403768430207381 Functional Gain - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106152123 chr10:106152126 nonsynonymous SNV 0.932 2 24 hm5C_associated_SNPs_128871 0 0 0 0 1 CFAP58 chr10:106152152 5'GT 106152152 Upstream 27bp
chr12 123463717 123463717 1 + C T SKCM 123463716 + 123463696 123463736 41 GGCGGCCAGCTGCATGGAGCCCGGCCCTTGGGCACTGGTGA GGCGGCCAGCTGCATGGAGCCTGGCCCTTGGGCACTGGTGA < 41bp 0.562918534110096 0.764792003904919 0.4161858 0.37382525 prediction 0.403746939589646 Functional Gain - OGFOD2 ENSG00000111325 CDS Human protein_coding chr12:123463716 chr12:123463717 nonsynonymous SNV 0.936 3 22 hm5C_associated_SNPs_128873 0 0 1 0 1 OGFOD2 chr12:123463630 3'AG 123463630 Downstream 88bp
chr4 157999285 157999285 1 + T C UCEC 157999282 + 157999262 157999302 41 AAGGGAAGGGGAAAAAGAAGCAGTATCTATGCCCATCGTAT AAGGGAAGGGGAAAAAGAAGCAGCATCTATGCCCATCGTAT < 41bp 0.501749210003721 0.703621948562512 0.26604003 0.28551647 prediction 0.403745477117581 Functional Gain - GLRB ENSG00000109738 CDS Human protein_coding chr4:157999282 chr4:157999285 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_128874 0 0 0 0 1 GLRB chr4:157999298 5'GT 157999298 Upstream 14bp
chr17 48252808 48252808 1 + C G rs60300808 48252807 + 48252787 48252827 41 GACCAGCACTGACAGCCTAGCCAGGTAGGTCTGGTGGGTGA GACCAGCACTGACAGCCTAGCGAGGTAGGTCTGGTGGGTGA < 41bp 0.690030567903599 0.891900757837979 0.892431 0.928331 prediction 0.40374037986876 Functional Gain - SGCA ENSG00000188662 ncRNA_intronic Human transcribed_unitary_pseudogene chr17:48252807 chr17:48252808 . . 0 22 hm5C_associated_SNPs_128875 2 0 0 0 1 SGCA chr17:48252810 5'GT 48252810 Upstream 3bp
chr6 76564953 76564953 1 + A G rs2273857 76564950 + 76564930 76564970 41 GATCTTCGAGTAAGTTTGACCACAAGAGTCATGCTAACAAC GATCTTCGAGTAAGTTTGACCACGAGAGTCATGCTAACAAC < 41bp 0.590473270963062 0.792334246623323 0.08084735 0.17550418 prediction 0.403721951320523 Functional Gain - MYO6 ENSG00000196586 CDS Human protein_coding chr6:76564950 chr6:76564953 synonymous SNV . 0 24 hm5C_associated_SNPs_128879 3 0 1 0 2 MYO6 chr6:76564856 3'AG 76564856 Downstream 98bp
chr6 76564953 76564953 1 + A G rs2273857 76564950 + 76564930 76564970 41 GATCTTCGAGTAAGTTTGACCACAAGAGTCATGCTAACAAC GATCTTCGAGTAAGTTTGACCACGAGAGTCATGCTAACAAC < 41bp 0.590473270963062 0.792334246623323 0.08084735 0.17550418 prediction 0.403721951320523 Functional Gain - MYO6 ENSG00000196586 CDS Human protein_coding chr6:76564950 chr6:76564953 synonymous SNV . 0 24 hm5C_associated_SNPs_128879 3 0 1 0 2 MYO6 chr6:76565000 5'GT 76565000 Upstream 48bp
chr15 43693956 43693956 1 + A G DLBC 43693953 + 43693933 43693973 41 AGTTCTCCCAGCTGCTTCATCAGATCAATTCTACCCGAGAC AGTTCTCCCAGCTGCTTCATCAGGTCAATTCTACCCGAGAC < 41bp 0.450630307154711 0.701851734971989 0.6097799 0.8581858 prediction 0.403703469943979 Functional Gain - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43693953 chr15:43693956 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_128882 0 0 1 0 2 TUBGCP4 chr15:43693914 3'AG 43693914 Downstream 43bp
chr15 43693956 43693956 1 + A G DLBC 43693953 + 43693933 43693973 41 AGTTCTCCCAGCTGCTTCATCAGATCAATTCTACCCGAGAC AGTTCTCCCAGCTGCTTCATCAGGTCAATTCTACCCGAGAC < 41bp 0.450630307154711 0.701851734971989 0.6097799 0.8581858 prediction 0.403703469943979 Functional Gain - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43693953 chr15:43693956 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_128882 0 0 1 0 2 TUBGCP4 chr15:43694048 5'GT 43694048 Upstream 93bp
chr5 7892968 7892968 1 + T C LUAD 7892965 + 7892945 7892985 41 GCTGGCCTTGTTGGTTGCTTCAGTTCTTCAGCCAAACATAC GCTGGCCTTGTTGGTTGCTTCAGCTCTTCAGCCAAACATAC < 41bp 0.494617818326729 0.701851244187531 0.37391782 0.4259585 prediction 0.403702488375061 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7892965 chr5:7892968 nonsynonymous SNV 0.143 0 24 hm5C_associated_SNPs_128883 0 0 1 0 1 MTRR chr5:7893026 5'GT 7893026 Upstream 59bp
chr2 136399355 136399355 1 + A G rs116803765 136399352 + 136399332 136399372 41 TGGCAGTATTCTGATCAACCCACAAACAGGTTGGTATCCAG TGGCAGTATTCTGATCAACCCACGAACAGGTTGGTATCCAG < 41bp 0.467773150242279 0.701851123299603 0.02936253 0.20451906 prediction 0.403702246599205 Functional Gain - R3HDM1 ENSG00000048991 CDS Human protein_coding chr2:136399352 chr2:136399355 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_128884 0 0 1 0 1 R3HDM1 chr2:136399360 5'GT 136399360 Upstream 6bp
chr17 40836131 40836131 1 + C T SKCM 40836130 + 40836110 40836150 41 TTAATGAAGAAGCACCGGATCCGGGCCGTGGCCACACAGGG TTAATGAAGAAGCACCGGATCTGGGCCGTGGCCACACAGGG < 41bp 0.451321449960387 0.701849907771133 0.6748287 0.38362753 prediction 0.403699815542265 Functional Gain - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40836130 chr17:40836131 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_128886 0 0 0 0 1 CNTNAP1 chr17:40836054 3'AG 40836054 Downstream 78bp
chr6 33374387 33374387 1 + C T UCEC 33374386 + 33374366 33374406 41 TAGGAGTCCCACGTGCCTTACCGGAACAGCAAACTGACCTA TAGGAGTCCCACGTGCCTTACTGGAACAGCAAACTGACCTA < 41bp 0.446469932371464 0.70184726990276 0.8558267 0.41113523 prediction 0.403694539805521 Functional Gain - KIFC1 ENSG00000237649 CDS Human protein_coding chr6:33374386 chr6:33374387 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_128889 0 0 1 0 2 KIFC1 chr6:33374369 3'AG 33374369 Downstream 19bp
chr6 33374387 33374387 1 + C T UCEC 33374386 + 33374366 33374406 41 TAGGAGTCCCACGTGCCTTACCGGAACAGCAAACTGACCTA TAGGAGTCCCACGTGCCTTACTGGAACAGCAAACTGACCTA < 41bp 0.446469932371464 0.70184726990276 0.8558267 0.41113523 prediction 0.403694539805521 Functional Gain - KIFC1 ENSG00000237649 CDS Human protein_coding chr6:33374386 chr6:33374387 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_128889 0 0 1 0 2 KIFC1 chr6:33374442 5'GT 33374442 Upstream 56bp
chr17 43884400 43884400 1 + C T SKCM 43884399 + 43884379 43884419 41 CTTCTCCTTCTGGGGCTGAACCCCGTCTCTGCCTCCCTCCA CTTCTCCTTCTGGGGCTGAACTCCGTCTCTGCCTCCCTCCA < 41bp 0.517328351362983 0.71917459815334 0.33301824 0.49371654 prediction 0.403692493580713 Functional Gain - CRHR1 ENSG00000120088 CDS Human protein_coding chr17:43884399 chr17:43884400 nonsynonymous SNV 0.534 0 22 hm5C_associated_SNPs_128890 0 0 0 0 1 CRHR1 chr17:43884463 5'GT 43884463 Upstream 64bp
chrX 128922436 128922436 1 + C T SKCM 128922435 + 128922415 128922455 41 AGATGACTCAGGTGTCCCCACCCCAGAAGATGCTGGGAAGA AGATGACTCAGGTGTCCCCACTCCAGAAGATGCTGGGAAGA < 41bp 0.41946708170081 0.701841330829058 0.22695819 0.9385861 prediction 0.403682661658116 Functional Gain - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128922435 chrX:128922436 synonymous SNV . 0 22 hm5C_associated_SNPs_128893 0 0 0 0 1 SASH3 chrX:128922407 3'AG 128922407 Downstream 30bp
chr1 22925427 22925427 1 + C A GBM 22925426 + 22925406 22925446 41 TCAGACCTGGGCTATGTCCACCGAGACCTGGCCGCCCGCAA TCAGACCTGGGCTATGTCCACAGAGACCTGGCCGCCCGCAA < 41bp 0.428477218874722 0.701833884627287 0.58849335 0.8624793 prediction 0.403667769254574 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22925426 chr1:22925427 synonymous SNV . 0 22 hm5C_associated_SNPs_128897 0 0 0 0 1 EPHA8 chr1:22925331 3'AG 22925331 Downstream 97bp
chr22 30054251 30054251 1 + C T CHOL 30054250 + 30054230 30054270 41 GGTGTGAACTACTTTGCAATCCGGGTGTGTTGAAACCTCTC GGTGTGAACTACTTTGCAATCTGGGTGTGTTGAAACCTCTC < 41bp 0.578168876947041 0.779998289231636 0.89042616 0.4612447 prediction 0.403658824569189 Functional Gain - NF2 ENSG00000186575 CDS Human protein_coding chr22:30054250 chr22:30054251 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_128898 0 0 1 0 2 NF2 chr22:30054178 3'AG 30054178 Downstream 74bp
chr22 30054251 30054251 1 + C T CHOL 30054250 + 30054230 30054270 41 GGTGTGAACTACTTTGCAATCCGGGTGTGTTGAAACCTCTC GGTGTGAACTACTTTGCAATCTGGGTGTGTTGAAACCTCTC < 41bp 0.578168876947041 0.779998289231636 0.89042616 0.4612447 prediction 0.403658824569189 Functional Gain - NF2 ENSG00000186575 CDS Human protein_coding chr22:30054250 chr22:30054251 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_128898 0 0 1 0 2 NF2 chr22:30054253 5'GT 30054253 Upstream 3bp
chr19 56185322 56185322 1 + T C UCEC 56185319 + 56185299 56185339 41 GATCTTTGTGGAGTTCACCTCTGTGTTTGACTGCCAGAAAG GATCTTTGTGGAGTTCACCTCTGCGTTTGACTGCCAGAAAG < 41bp 0.566339787418631 0.768163168263456 0.18306378 0.19475418 prediction 0.40364676168965 Functional Gain - U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56185319 chr19:56185322 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_128901 0 0 1 0 1 U2AF2 chr19:56185300 3'AG 56185300 Downstream 23bp
chr11 6292660 6292660 1 + C T GBM 6292659 + 6292639 6292679 41 ACTTGCGCTCGCTGCTGCCCCCGGCCTCCACGAGCTCGCCC ACTTGCGCTCGCTGCTGCCCCTGGCCTCCACGAGCTCGCCC < 41bp 0.594378090449989 0.796193513134122 0.38659465 0.23509091 prediction 0.403630845368265 Functional Gain - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6292659 chr11:6292660 nonsynonymous SNV 0.856 2 22 hm5C_associated_SNPs_128905 0 0 0 0 1 CCKBR chr11:6292627 3'AG 6292627 Downstream 34bp
chr11 117058366 117058366 1 + T C COAD 117058363 + 117058343 117058383 41 GAGAATGTTTCTGGATCTACCGATGGTCTGGTTGACAGCGC GAGAATGTTTCTGGATCTACCGACGGTCTGGTTGACAGCGC < 41bp 0.547955178935791 0.749765894315914 0.25198188 0.8658124 prediction 0.403621430760247 Functional Gain - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117058363 chr11:117058366 synonymous SNV . 0 24 hm5C_associated_SNPs_128907 0 0 1 0 1 SIDT2 chr11:117058344 3'AG 117058344 Downstream 23bp
chr17 45668224 45668224 1 + T G LUAD 45668220 + 45668200 45668240 41 ACCCGTGCCCAGGAGCTTGACGCCTTAGATAACAGCCATCC ACCCGTGCCCAGGAGCTTGACGCCGTAGATAACAGCCATCC < 41bp 0.507458012221031 0.709267300717863 0.013350278 0.09160361 prediction 0.403618576993663 Functional Gain - NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45668220 chr17:45668224 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_128909 0 0 0 0 1 NPEPPS chr17:45668247 5'GT 45668247 Upstream 24bp
chr22 35653473 35653473 1 + C T rs5755674 35653472 + 35653452 35653492 41 GCTCGACTGAGGCTCCCTGGCCGCTCGCGCTTTTCTCTCCT GCTCGACTGAGGCTCCCTGGCTGCTCGCGCTTTTCTCTCCT < 41bp 0.569289404955632 0.771098336574481 0.091113806 0.07808876 prediction 0.403617863237699 Functional Gain - HMGXB4 ENSG00000100281 UTR5 Human protein_coding chr22:35653472 chr22:35653473 . . 0 22 hm5C_associated_SNPs_128910 0 0 0 0 1 HMGXB4 chr22:35653550 5'GT 35653550 Upstream 78bp
chr14 104518353 104518353 1 + T C UCEC 104518351 + 104518331 104518371 41 TGGTCATGGAGCAGGCCGACCGTGAGAGCAGCAGAGGGAAG TGGTCATGGAGCAGGCCGACCGCGAGAGCAGCAGAGGGAAG < 41bp 0.646901702406287 0.848705229688954 0.3804164 0.6542019 prediction 0.403607054565335 Functional Gain - TDRD9 ENSG00000156414 CDS Human protein_coding chr14:104518351 chr14:104518353 synonymous SNV . 0 23 hm5C_associated_SNPs_128911 0 0 0 0 1 TDRD9 chr14:104518318 3'AG 104518318 Downstream 36bp
chr1 156617399 156617399 1 + C T GBM 156617398 + 156617378 156617418 41 TTGGAGCCCACATCGCCACCCCGGAGCAGCTCTATGCCGCC TTGGAGCCCACATCGCCACCCTGGAGCAGCTCTATGCCGCC < 41bp 0.637300201250992 0.839100381422235 0.14600524 0.15377235 prediction 0.403600360342486 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156617398 chr1:156617399 nonsynonymous SNV 0.940 3 22 hm5C_associated_SNPs_128914 0 0 0 0 2 BCAN chr1:156617300 3'AG 156617300 Downstream 100bp
chr1 156617399 156617399 1 + C T GBM 156617398 + 156617378 156617418 41 TTGGAGCCCACATCGCCACCCCGGAGCAGCTCTATGCCGCC TTGGAGCCCACATCGCCACCCTGGAGCAGCTCTATGCCGCC < 41bp 0.637300201250992 0.839100381422235 0.14600524 0.15377235 prediction 0.403600360342486 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156617398 chr1:156617399 nonsynonymous SNV 0.940 3 22 hm5C_associated_SNPs_128914 0 0 0 0 2 BCAN chr1:156617474 5'GT 156617474 Upstream 76bp
chr6 71567846 71567846 1 + C T UCEC 71567845 + 71567825 71567865 41 CCTCAGAACGTTGTTGGCCCCCAAGGAGGAATGGTGGGACA CCTCAGAACGTTGTTGGCCCCTAAGGAGGAATGGTGGGACA < 41bp 0.443067849929074 0.701791708719231 0.15447539 0.1567874 prediction 0.403583417438463 Functional Gain - SMAP1 ENSG00000112305 CDS Human protein_coding chr6:71567845 chr6:71567846 stopgain 0.991 0 22 hm5C_associated_SNPs_128916 0 0 0 0 1 SMAP1 chr6:71567932 5'GT 71567932 Upstream 87bp
chr10 51584664 51584664 1 + A G UCEC 51584661 + 51584641 51584681 41 TCAATAATGTCGGGGGAAACCTAAAGGGCTTAGAAAACTGG TCAATAATGTCGGGGGAAACCTAGAGGGCTTAGAAAACTGG < 41bp 0.578244692737335 0.780035664884219 0.12816918 0.10980928 prediction 0.403581944293769 Functional Gain - NCOA4 ENSG00000138293 CDS Human other chr10:51584661 chr10:51584664 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_128917 0 0 1 0 1 NCOA4 chr10:51584616 3'AG 51584616 Downstream 49bp
chr3 186392978 186392978 1 + A G UCEC 186392975 + 186392955 186392995 41 AAACTGTGAAGTCTTCGACCCTCAGGTGGGTTGTCTAAGCA AAACTGTGAAGTCTTCGACCCTCGGGTGGGTTGTCTAAGCA < 41bp 0.45951703039283 0.701788978617997 0.16189057 0.32380402 prediction 0.403577957235993 Functional Gain - HRG ENSG00000113905 CDS Human protein_coding chr3:186392975 chr3:186392978 nonsynonymous SNV 0.185 1 24 hm5C_associated_SNPs_128920 0 0 0 0 1 HRG chr3:186392979 5'GT 186392979 Upstream 2bp
chr10 22606902 22606902 1 + C T HNSC 22606901 + 22606881 22606921 41 ATACTAGAGGCAGGAAAGCACCGAGCTGACAAGTCAACTCT ATACTAGAGGCAGGAAAGCACTGAGCTGACAAGTCAACTCT < 41bp 0.458042294322478 0.701786237077507 0.23037645 0.2544662 prediction 0.403572474155014 Functional Gain - COMMD3;COMMD3-BMI1 ENSG00000148444;ENSG00000269897 CDS Human other chr10:22606901 chr10:22606902 stopgain 0.721 0 22 hm5C_associated_SNPs_128922 0 0 1 0 2 COMMD3;COMMD3-BMI1 chr10:22606813 3'AG 22606813 Downstream 90bp
chr10 22606902 22606902 1 + C T HNSC 22606901 + 22606881 22606921 41 ATACTAGAGGCAGGAAAGCACCGAGCTGACAAGTCAACTCT ATACTAGAGGCAGGAAAGCACTGAGCTGACAAGTCAACTCT < 41bp 0.458042294322478 0.701786237077507 0.23037645 0.2544662 prediction 0.403572474155014 Functional Gain - COMMD3;COMMD3-BMI1 ENSG00000148444;ENSG00000269897 CDS Human other chr10:22606901 chr10:22606902 stopgain 0.721 0 22 hm5C_associated_SNPs_128922 0 0 1 0 2 COMMD3;COMMD3-BMI1 chr10:22606924 5'GT 22606924 Upstream 23bp
chr15 41102150 41102150 1 + C T LGG 41102149 + 41102129 41102169 41 GCTGAGCGCCTAGCACGACTCCGCCAGGAGAACAAGCCCAG GCTGAGCGCCTAGCACGACTCTGCCAGGAGAACAAGCCCAG < 41bp 0.441067673432683 0.701785470362043 0.07313374 0.03781846 prediction 0.403570940724085 Functional Gain - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41102149 chr15:41102150 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_128923 0 0 0 0 1 ZFYVE19 chr15:41102168 5'GT 41102168 Upstream 19bp
chr21 45826567 45826567 1 + C A LUAD 45826563 + 45826543 45826583 41 CAGGCCATCCTCATCCACAACGAGCGCCGGGTGGACTGGCT CAGGCCATCCTCATCCACAACGAGAGCCGGGTGGACTGGCT < 41bp 0.294400401645192 0.701773147065353 0.8890853 0.9254687 prediction 0.403546294130706 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45826563 chr21:45826567 nonsynonymous SNV 0.950 1 25 hm5C_associated_SNPs_128930 0 0 0 0 2 TRPM2 chr21:45826477 3'AG 45826477 Downstream 91bp
chr21 45826567 45826567 1 + C A LUAD 45826563 + 45826543 45826583 41 CAGGCCATCCTCATCCACAACGAGCGCCGGGTGGACTGGCT CAGGCCATCCTCATCCACAACGAGAGCCGGGTGGACTGGCT < 41bp 0.294400401645192 0.701773147065353 0.8890853 0.9254687 prediction 0.403546294130706 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45826563 chr21:45826567 nonsynonymous SNV 0.950 1 25 hm5C_associated_SNPs_128930 0 0 0 0 2 TRPM2 chr21:45826648 5'GT 45826648 Upstream 82bp
chr11 124743641 124743641 1 + C A LUSC 124743640 + 124743620 124743660 41 CTACAGAACCCAGTTCCCCTCCGGGGGCTCCCTCTCAGCCA CTACAGAACCCAGTTCCCCTCAGGGGGCTCCCTCTCAGCCA < 41bp 0.659439238087025 0.861206674389726 0.93707347 0.9552281 prediction 0.403534872605402 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124743640 chr11:124743641 nonsynonymous SNV 0.519 5 22 hm5C_associated_SNPs_128932 0 0 0 0 1 ROBO3 chr11:124743593 3'AG 124743593 Downstream 49bp
chr11 75428962 75428962 1 + C T UCEC 75428961 + 75428941 75428981 41 AGTTCGCGCCCTTGTTTATGCCGTGGGAGCGCAGGCTGCAG AGTTCGCGCCCTTGTTTATGCTGTGGGAGCGCAGGCTGCAG < 41bp 0.562800828795191 0.76456133128176 0.4012851 0.2770914 prediction 0.403521004973137 Functional Gain - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75428961 chr11:75428962 nonsynonymous SNV 0.336 3 22 hm5C_associated_SNPs_128936 0 0 0 0 1 MOGAT2 chr11:75429024 5'GT 75429024 Upstream 63bp
chr19 41743987 41743987 1 + C T SKCM 41743986 + 41743966 41744006 41 CCTCACACCCCTTATCACATCCGCGTGGCATGCACCAGCAG CCTCACACCCCTTATCACATCTGCGTGGCATGCACCAGCAG < 41bp 0.431937959266944 0.70175996086149 0.54670775 0.48061782 prediction 0.40351992172298 Functional Gain - AXL ENSG00000167601 CDS Human protein_coding chr19:41743986 chr19:41743987 nonsynonymous SNV 0.387 2 22 hm5C_associated_SNPs_128937 0 0 0 0 1 AXL chr19:41744059 5'GT 41744059 Upstream 73bp
chr1 97270427 97270427 1 + C T UCEC 97270426 + 97270406 97270446 41 GCTGCTGCAGCTGCTGCTGGCCGAGTGGGTATGCCTGGAGT GCTGCTGCAGCTGCTGCTGGCTGAGTGGGTATGCCTGGAGT < 41bp 0.533731002926485 0.735484692141778 0.77956676 0.7301527 prediction 0.403507378430586 Functional Gain - PTBP2 ENSG00000117569 CDS Human protein_coding chr1:97270426 chr1:97270427 stopgain 1.000 1 22 hm5C_associated_SNPs_128938 0 0 1 0 3 PTBP2 chr1:97270341 3'AG 97270341 Downstream 87bp
chr1 97270427 97270427 1 + C T UCEC 97270426 + 97270406 97270446 41 GCTGCTGCAGCTGCTGCTGGCCGAGTGGGTATGCCTGGAGT GCTGCTGCAGCTGCTGCTGGCTGAGTGGGTATGCCTGGAGT < 41bp 0.533731002926485 0.735484692141778 0.77956676 0.7301527 prediction 0.403507378430586 Functional Gain - PTBP2 ENSG00000117569 CDS Human protein_coding chr1:97270426 chr1:97270427 stopgain 1.000 1 22 hm5C_associated_SNPs_128938 0 0 1 0 3 PTBP2 chr1:97270356 3'AG 97270356 Downstream 72bp
chr1 97270427 97270427 1 + C T UCEC 97270426 + 97270406 97270446 41 GCTGCTGCAGCTGCTGCTGGCCGAGTGGGTATGCCTGGAGT GCTGCTGCAGCTGCTGCTGGCTGAGTGGGTATGCCTGGAGT < 41bp 0.533731002926485 0.735484692141778 0.77956676 0.7301527 prediction 0.403507378430586 Functional Gain - PTBP2 ENSG00000117569 CDS Human protein_coding chr1:97270426 chr1:97270427 stopgain 1.000 1 22 hm5C_associated_SNPs_128938 0 0 1 0 3 PTBP2 chr1:97270495 5'GT 97270495 Upstream 69bp
chr15 40675155 40675155 1 + C A rs7164132 40675151 + 40675131 40675171 41 GGAAGTTTCTATTTGAAACCCAGGCGGCCGACTTAGCCGGT GGAAGTTTCTATTTGAAACCCAGGAGGCCGACTTAGCCGGT < 41bp 0.736709052166973 0.9384465648982 0.5730754 0.78221184 prediction 0.403475025462455 Functional Gain - KNSTRN ENSG00000128944 CDS Human protein_coding chr15:40675151 chr15:40675155 nonsynonymous SNV 0.041 2 25 hm5C_associated_SNPs_128943 0 0 1 0 1 KNSTRN chr15:40675245 5'GT 40675245 Upstream 91bp
chr20 31830941 31830941 1 + C A rs77085264 31830937 + 31830917 31830957 41 TTCCCCCAACAGAACTATTTCTTGCTGCTCAATCCATTTCC TTCCCCCAACAGAACTATTTCTTGATGCTCAATCCATTTCC < 41bp 0.319001000362384 0.701733350072959 0.023026407 0.10164958 prediction 0.403466700145917 Functional Gain - BPIFA1 ENSG00000198183 UTR3 Human protein_coding chr20:31830937 chr20:31830941 . . 0 25 hm5C_associated_SNPs_128946 0 0 0 12 1 BPIFA1 chr20:31830929 3'AG 31830929 Downstream 13bp
chr14 52735294 52735294 1 + C T SKCM 52735293 + 52735273 52735313 41 CGCGGACGGGAGGGAAGCGTCCCCTCAGCCCCTGGAGGAGC CGCGGACGGGAGGGAAGCGTCTCCTCAGCCCCTGGAGGAGC < 41bp 0.458888779152985 0.70172807495632 0.07179746 0.24135879 prediction 0.40345614991264 Functional Gain - PTGDR ENSG00000168229 CDS Human protein_coding chr14:52735293 chr14:52735294 synonymous SNV . 0 22 hm5C_associated_SNPs_128948 0 0 0 0 1 PTGDR chr14:52735378 5'GT 52735378 Upstream 85bp
chr7 143080384 143080384 1 + C T SKCM 143080383 + 143080363 143080403 41 GAGTGCAGGAGAAGCAGCACCCCGTGCCCCCACCGGCTCAG GAGTGCAGGAGAAGCAGCACCTCGTGCCCCCACCGGCTCAG < 41bp 0.444057838023198 0.701726257333347 0.1576916 0.21252564 prediction 0.403452514666693 Functional Gain - ZYX ENSG00000159840 CDS Human protein_coding chr7:143080383 chr7:143080384 nonsynonymous SNV 0.100 2 22 hm5C_associated_SNPs_128950 0 0 1 0 1 ZYX chr7:143080415 5'GT 143080415 Upstream 32bp
chr3 195636800 195636800 1 + C G rs56401727 195636799 + 195636779 195636819 41 GCCTGCGCCTTCCTGCGGTGCCGAGGAGCGGTGGCGCCCTG GCCTGCGCCTTCCTGCGGTGCGGAGGAGCGGTGGCGCCCTG < 41bp 0.682411141905925 0.88413273653777 0.8753494 0.9189279 prediction 0.403443189263689 Functional Gain - TNK2-AS1 ENSG00000224614 ncRNA_exonic Human antisense chr3:195636799 chr3:195636800 . . 0 22 hm5C_associated_SNPs_128951 0 0 0 0 1 TNK2-AS1 chr3:195636736 3'AG 195636736 Downstream 65bp
chr1 16377026 16377026 1 + C T SKCM 16377025 + 16377005 16377045 41 CCACAGCAAGCCTGTGTACTCCGCTCTGGCCACCTTGGTTC CCACAGCAAGCCTGTGTACTCTGCTCTGGCCACCTTGGTTC < 41bp 0.589512377646112 0.791232782381391 0.19354457 0.19185913 prediction 0.403440809470558 Functional Gain - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16377025 chr1:16377026 synonymous SNV . 0 22 hm5C_associated_SNPs_128954 0 0 0 0 2 CLCNKB chr1:16377011 3'AG 16377011 Downstream 16bp
chr1 16377026 16377026 1 + C T SKCM 16377025 + 16377005 16377045 41 CCACAGCAAGCCTGTGTACTCCGCTCTGGCCACCTTGGTTC CCACAGCAAGCCTGTGTACTCTGCTCTGGCCACCTTGGTTC < 41bp 0.589512377646112 0.791232782381391 0.19354457 0.19185913 prediction 0.403440809470558 Functional Gain - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16377025 chr1:16377026 synonymous SNV . 0 22 hm5C_associated_SNPs_128954 0 0 0 0 2 CLCNKB chr1:16377095 5'GT 16377095 Upstream 70bp
chr5 94749873 94749873 1 + A G LGG 94749870 + 94749850 94749890 41 CAGACCATCACCAGCATCGTCAAAAAACTCAGCCAAAATAT CAGACCATCACCAGCATCGTCAAGAAACTCAGCCAAAATAT < 41bp 0.498266078362384 0.701709369664294 0.12064788 0.3201889 prediction 0.403418739328588 Functional Gain - FAM81B ENSG00000153347 CDS Human protein_coding chr5:94749870 chr5:94749873 synonymous SNV . 0 24 hm5C_associated_SNPs_128956 0 0 0 0 1 FAM81B chr5:94749894 5'GT 94749894 Upstream 22bp
chr3 183884279 183884279 1 + C T STAD 183884278 + 183884258 183884298 41 ATGAGTAATGACGATGCAGTCCGGGTACTGCGGGAGATTGT ATGAGTAATGACGATGCAGTCTGGGTACTGCGGGAGATTGT < 41bp 0.631718174978304 0.833424540190304 0.25375426 0.06240037 prediction 0.403412730424001 Functional Gain - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183884278 chr3:183884279 nonsynonymous SNV 0.991 2 22 hm5C_associated_SNPs_128957 0 0 1 0 3 DVL3 chr3:183884234 3'AG 183884234 Downstream 46bp
chr3 183884279 183884279 1 + C T STAD 183884278 + 183884258 183884298 41 ATGAGTAATGACGATGCAGTCCGGGTACTGCGGGAGATTGT ATGAGTAATGACGATGCAGTCTGGGTACTGCGGGAGATTGT < 41bp 0.631718174978304 0.833424540190304 0.25375426 0.06240037 prediction 0.403412730424001 Functional Gain - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183884278 chr3:183884279 nonsynonymous SNV 0.991 2 22 hm5C_associated_SNPs_128957 0 0 1 0 3 DVL3 chr3:183884296 5'GT 183884296 Upstream 18bp
chr3 183884279 183884279 1 + C T STAD 183884278 + 183884258 183884298 41 ATGAGTAATGACGATGCAGTCCGGGTACTGCGGGAGATTGT ATGAGTAATGACGATGCAGTCTGGGTACTGCGGGAGATTGT < 41bp 0.631718174978304 0.833424540190304 0.25375426 0.06240037 prediction 0.403412730424001 Functional Gain - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183884278 chr3:183884279 nonsynonymous SNV 0.991 2 22 hm5C_associated_SNPs_128957 0 0 1 0 3 DVL3 chr3:183884310 5'GT 183884310 Upstream 32bp
chr1 161641217 161641217 1 + C T LUAD 161641216 + 161641196 161641236 41 GCTGTGCTGAAACTCGAGCCCCAGTGGATCAACGTGCTCCA GCTGTGCTGAAACTCGAGCCCTAGTGGATCAACGTGCTCCA < 41bp 0.618716091909251 0.820418353258346 0.066244304 0.07679069 prediction 0.403404522698189 Functional Gain - FCGR2B ENSG00000072694 CDS Human protein_coding chr1:161641216 chr1:161641217 stopgain 0.855 0 22 hm5C_associated_SNPs_128959 0 0 0 0 2 FCGR2B chr1:161641182 3'AG 161641182 Downstream 36bp
chr1 161641217 161641217 1 + C T LUAD 161641216 + 161641196 161641236 41 GCTGTGCTGAAACTCGAGCCCCAGTGGATCAACGTGCTCCA GCTGTGCTGAAACTCGAGCCCTAGTGGATCAACGTGCTCCA < 41bp 0.618716091909251 0.820418353258346 0.066244304 0.07679069 prediction 0.403404522698189 Functional Gain - FCGR2B ENSG00000072694 CDS Human protein_coding chr1:161641216 chr1:161641217 stopgain 0.855 0 22 hm5C_associated_SNPs_128959 0 0 0 0 2 FCGR2B chr1:161641185 3'AG 161641185 Downstream 33bp
chr16 68856056 68856056 1 + A G OV 68856053 + 68856033 68856073 41 TCATTGATGCAGACCTTCCTCCCAATACATCTCCCTTCACA TCATTGATGCAGACCTTCCTCCCGATACATCTCCCTTCACA < 41bp 0.461393811825273 0.701701298667221 0.06218043 0.046900958 prediction 0.403402597334442 Functional Gain - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68856053 chr16:68856056 nonsynonymous SNV 0.991 3 24 hm5C_associated_SNPs_128960 0 0 1 0 1 CDH1 chr16:68856128 5'GT 68856128 Upstream 73bp
chr19 39963543 39963543 1 + T G COAD 39963541 + 39963521 39963561 41 AACGAACTCATCGGCCAGACCGTGCGCATCTCCCAGGGGCC AACGAACTCATCGGCCAGACCGGGCGCATCTCCCAGGGGCC < 41bp 0.340894821520663 0.701700231815036 0.07124144 0.843129 prediction 0.403400463630072 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39963541 chr19:39963543 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_128961 0 0 1 0 2 SUPT5H chr19:39963450 3'AG 39963450 Downstream 94bp
chr19 39963543 39963543 1 + T G COAD 39963541 + 39963521 39963561 41 AACGAACTCATCGGCCAGACCGTGCGCATCTCCCAGGGGCC AACGAACTCATCGGCCAGACCGGGCGCATCTCCCAGGGGCC < 41bp 0.340894821520663 0.701700231815036 0.07124144 0.843129 prediction 0.403400463630072 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39963541 chr19:39963543 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_128961 0 0 1 0 2 SUPT5H chr19:39963569 5'GT 39963569 Upstream 27bp
chr20 19956407 19956407 1 + T G LUAD 19956403 + 19956383 19956423 41 TCGGAGCTGGACCCCCCCATCGAGTCGCTGATCCCTGAAGA TCGGAGCTGGACCCCCCCATCGAGGCGCTGATCCCTGAAGA < 41bp 0.543629192843431 0.745326202068664 0.38080353 0.9354835 prediction 0.403394018450465 Functional Gain - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19956403 chr20:19956407 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_128962 0 0 0 0 1 RIN2 chr20:19956431 5'GT 19956431 Upstream 25bp
chr1 209602622 209602622 1 + T G rs575075385 209602620 + 209602600 209602640 41 CAAAGTGTTGGGATCACAGGCGTGAGCCACCGCATCCGGCC CAAAGTGTTGGGATCACAGGCGGGAGCCACCGCATCCGGCC < 41bp 0.626286278074426 0.827982871153862 0.44573882 0.91250324 prediction 0.403393186158873 Functional Gain - MIR205HG ENSG00000230937 ncRNA_exonic Human processed_transcript chr1:209602620 chr1:209602622 . . 0 23 hm5C_associated_SNPs_128963 0 0 0 0 1 MIR205HG chr1:209602526 3'AG 209602526 Downstream 97bp
chr2 27663749 27663749 1 + T C STAD 27663746 + 27663726 27663766 41 GCAGGAGGAGGTGACATCACCTGTCGTGCCCCCCTCTGTCA GCAGGAGGAGGTGACATCACCTGCCGTGCCCCCCTCTGTCA < 41bp 0.570175017884632 0.771869651599431 0.57870066 0.8307966 prediction 0.403389267429598 Functional Gain - NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663746 chr2:27663749 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_128965 0 0 0 0 2 NRBP1 chr2:27663672 3'AG 27663672 Downstream 78bp
chr2 27663749 27663749 1 + T C STAD 27663746 + 27663726 27663766 41 GCAGGAGGAGGTGACATCACCTGTCGTGCCCCCCTCTGTCA GCAGGAGGAGGTGACATCACCTGCCGTGCCCCCCTCTGTCA < 41bp 0.570175017884632 0.771869651599431 0.57870066 0.8307966 prediction 0.403389267429598 Functional Gain - NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663746 chr2:27663749 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_128965 0 0 0 0 2 NRBP1 chr2:27663807 5'GT 27663807 Upstream 59bp
chr4 115585186 115585186 1 + T C SARC 115585184 + 115585164 115585204 41 GGGTAAATGGTGCTAATGAACATGGCTTTGTCTTGGTGTCT GGGTAAATGGTGCTAATGAACACGGCTTTGTCTTGGTGTCT < 41bp 0.417784184368852 0.70168126544136 0.57184803 0.30676925 prediction 0.40336253088272 Functional Gain - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115585184 chr4:115585186 synonymous SNV . 0 23 hm5C_associated_SNPs_128970 0 0 1 0 1 UGT8 chr4:115585151 3'AG 115585151 Downstream 36bp
chr7 12680060 12680060 1 + A G rs35705332 12680057 + 12680037 12680077 41 TATTTACAAGAATGGAACATCAAAGAAAGGAGGTCAGGCAC TATTTACAAGAATGGAACATCAAGGAAAGGAGGTCAGGCAC < 41bp 0.464612492355758 0.701678956918737 0.15760028 0.30551127 prediction 0.403357913837473 Functional Gain - SCIN ENSG00000006747 CDS Human protein_coding chr7:12680057 chr7:12680060 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_128971 0 0 0 0 2 SCIN chr7:12679972 3'AG 12679972 Downstream 89bp
chr7 12680060 12680060 1 + A G rs35705332 12680057 + 12680037 12680077 41 TATTTACAAGAATGGAACATCAAAGAAAGGAGGTCAGGCAC TATTTACAAGAATGGAACATCAAGGAAAGGAGGTCAGGCAC < 41bp 0.464612492355758 0.701678956918737 0.15760028 0.30551127 prediction 0.403357913837473 Functional Gain - SCIN ENSG00000006747 CDS Human protein_coding chr7:12680057 chr7:12680060 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_128971 0 0 0 0 2 SCIN chr7:12680142 5'GT 12680142 Upstream 83bp
chr3 100000628 100000628 1 + T C UCEC 100000626 + 100000606 100000646 41 AAAAGGTGATAGTTTGGCATCATGGGATGGTATTTTAGACT AAAAGGTGATAGTTTGGCATCACGGGATGGTATTTTAGACT < 41bp 0.421664524360357 0.701674773689083 0.815844 0.7944345 prediction 0.403349547378165 Functional Gain - TBC1D23 ENSG00000036054 CDS Human protein_coding chr3:100000626 chr3:100000628 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_128973 0 0 1 0 2 TBC1D23 chr3:100000586 3'AG 100000586 Downstream 43bp
chr3 100000628 100000628 1 + T C UCEC 100000626 + 100000606 100000646 41 AAAAGGTGATAGTTTGGCATCATGGGATGGTATTTTAGACT AAAAGGTGATAGTTTGGCATCACGGGATGGTATTTTAGACT < 41bp 0.421664524360357 0.701674773689083 0.815844 0.7944345 prediction 0.403349547378165 Functional Gain - TBC1D23 ENSG00000036054 CDS Human protein_coding chr3:100000626 chr3:100000628 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_128973 0 0 1 0 2 TBC1D23 chr3:100000691 5'GT 100000691 Upstream 64bp
chr17 43138785 43138785 1 + T C BLCA 43138782 + 43138762 43138802 41 GGAACGGGAACGGCCATGAGCACTGCAGCGATTGCGAGAAT GGAACGGGAACGGCCATGAGCACCGCAGCGATTGCGAGAAT < 41bp 0.520023208875801 0.721697250996769 0.17831498 0.21816999 prediction 0.403348084241938 Functional Gain - NMT1 ENSG00000136448 CDS Human protein_coding chr17:43138782 chr17:43138785 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_128974 0 0 1 0 1 NMT1 chr17:43138828 5'GT 43138828 Upstream 44bp
chr4 41699220 41699220 1 + C G rs10027910 41699219 + 41699199 41699239 41 GTGACACGGCTTTCAAGCTTCCGGATCACTCACCATTTCTT GTGACACGGCTTTCAAGCTTCGGGATCACTCACCATTTCTT < 41bp 0.417710592882983 0.701669407774845 0.5992495 0.76912594 prediction 0.403338815549691 Functional Gain - LIMCH1 ENSG00000064042 UTR3 Human protein_coding chr4:41699219 chr4:41699220 . . 0 22 hm5C_associated_SNPs_128976 0 0 1 0 1 LIMCH1 chr4:41699177 3'AG 41699177 Downstream 44bp
chr11 71847143 71847143 1 + C A LUAD 71847139 + 71847119 71847159 41 AAGCACCACAAGACACAGCCCAGCCCCGAGGACGAGCTGTA AAGCACCACAAGACACAGCCCAGCACCGAGGACGAGCTGTA < 41bp 0.276533897075884 0.701667870799913 0.017539233 0.03338495 prediction 0.403335741599826 Functional Gain - FOLR3 ENSG00000110203 CDS Human protein_coding chr11:71847139 chr11:71847143 nonsynonymous SNV 0.014 3 25 hm5C_associated_SNPs_128978 0 0 0 0 1 FOLR3 chr11:71847166 5'GT 71847166 Upstream 24bp
chr1 156594457 156594457 1 + T A LIHC 156594455 + 156594435 156594475 41 TCGAGGGCTCCGTGCGCTACCCTGTGCTCACCGCACGCGCC TCGAGGGCTCCGTGCGCTACCCAGTGCTCACCGCACGCGCC < 41bp 0.497731638449052 0.701654474761539 0.09226632 0.49502087 prediction 0.403308949523079 Functional Gain - HAPLN2 ENSG00000132702 CDS Human protein_coding chr1:156594455 chr1:156594457 synonymous SNV . 0 23 hm5C_associated_SNPs_128983 0 0 1 0 1 HAPLN2 chr1:156594393 3'AG 156594393 Downstream 65bp
chr13 25285479 25285479 1 + T C UCEC 25285476 + 25285456 25285496 41 GGCTCAGTACTGGTTTGTGGCTGTGCCGCACGCCATCCTGA GGCTCAGTACTGGTTTGTGGCTGCGCCGCACGCCATCCTGA < 41bp 0.50124133069308 0.702895010482302 0.036138684 0.045813978 prediction 0.403307359578444 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25285476 chr13:25285479 nonsynonymous SNV 0.707 2 24 hm5C_associated_SNPs_128984 0 0 0 0 2 ATP12A chr13:25285456 3'AG 25285456 Downstream 24bp
chr13 25285479 25285479 1 + T C UCEC 25285476 + 25285456 25285496 41 GGCTCAGTACTGGTTTGTGGCTGTGCCGCACGCCATCCTGA GGCTCAGTACTGGTTTGTGGCTGCGCCGCACGCCATCCTGA < 41bp 0.50124133069308 0.702895010482302 0.036138684 0.045813978 prediction 0.403307359578444 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25285476 chr13:25285479 nonsynonymous SNV 0.707 2 24 hm5C_associated_SNPs_128984 0 0 0 0 2 ATP12A chr13:25285547 5'GT 25285547 Upstream 69bp
chr19 56465911 56465911 1 + C T SKCM 56465910 + 56465890 56465930 41 AATGTGATGGAAAAGTTTTTCCCCATATGGGACATTACGAC AATGTGATGGAAAAGTTTTTCTCCATATGGGACATTACGAC < 41bp 0.446613394356335 0.701646697211197 0.23051533 0.9644952 prediction 0.403293394422395 Functional Gain - NLRP8 ENSG00000179709 CDS Human protein_coding chr19:56465910 chr19:56465911 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_128988 0 0 0 0 1 NLRP8 chr19:56465867 3'AG 56465867 Downstream 45bp
chr7 73811479 73811479 1 + T C rs76865959 73811477 + 73811457 73811497 41 GGCCGGAGAGGGACCTGAGCCGTGAGGTACACAAGGCTGAG GGCCGGAGAGGGACCTGAGCCGCGAGGTACACAAGGCTGAG < 41bp 0.678339542750841 0.879982207558328 0.23123899 0.18755874 prediction 0.403285329614974 Functional Gain - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73811477 chr7:73811479 synonymous SNV . 0 23 hm5C_associated_SNPs_128990 0 0 1 0 2 CLIP2 chr7:73811404 3'AG 73811404 Downstream 76bp
chr7 73811479 73811479 1 + T C rs76865959 73811477 + 73811457 73811497 41 GGCCGGAGAGGGACCTGAGCCGTGAGGTACACAAGGCTGAG GGCCGGAGAGGGACCTGAGCCGCGAGGTACACAAGGCTGAG < 41bp 0.678339542750841 0.879982207558328 0.23123899 0.18755874 prediction 0.403285329614974 Functional Gain - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73811477 chr7:73811479 synonymous SNV . 0 23 hm5C_associated_SNPs_128990 0 0 1 0 2 CLIP2 chr7:73811563 5'GT 73811563 Upstream 85bp
chr17 3559991 3559991 1 + C T CESC 3559990 + 3559970 3560010 41 GAGCAGTTTCTCCTCAAATACCCCAACGGAGTGAACCCCGT GAGCAGTTTCTCCTCAAATACTCCAACGGAGTGAACCCCGT < 41bp 0.420252786843383 0.701636903586354 0.11191705 0.96937054 prediction 0.403273807172708 Functional Gain - CTNS ENSG00000040531 CDS Human protein_coding chr17:3559990 chr17:3559991 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_128993 0 0 0 0 2 CTNS chr17:3559970 3'AG 3559970 Downstream 22bp
chr17 3559991 3559991 1 + C T CESC 3559990 + 3559970 3560010 41 GAGCAGTTTCTCCTCAAATACCCCAACGGAGTGAACCCCGT GAGCAGTTTCTCCTCAAATACTCCAACGGAGTGAACCCCGT < 41bp 0.420252786843383 0.701636903586354 0.11191705 0.96937054 prediction 0.403273807172708 Functional Gain - CTNS ENSG00000040531 CDS Human protein_coding chr17:3559990 chr17:3559991 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_128993 0 0 0 0 2 CTNS chr17:3560089 5'GT 3560089 Upstream 99bp
chr17 48050471 48050471 1 + C T SKCM 48050470 + 48050450 48050490 41 GCGGCTGTCCCCGGAACCCTCCGAGCGGCGCCCTCAGGCCC GCGGCTGTCCCCGGAACCCTCTGAGCGGCGCCCTCAGGCCC < 41bp 0.618222379937919 0.819856105905497 0.9140574 0.88777965 prediction 0.403267451935156 Functional Gain - DLX4 ENSG00000108813 CDS Human protein_coding chr17:48050470 chr17:48050471 synonymous SNV . 0 22 hm5C_associated_SNPs_128994 0 0 0 0 1 DLX4 chr17:48050437 3'AG 48050437 Downstream 35bp
chr1 161185096 161185096 1 + C G rs113220867 161185092 + 161185072 161185112 41 GCTGCACAGTGCTGTCAGAACGGCCGATCTCCAGCCCAAGA GCTGCACAGTGCTGTCAGAACGGCGGATCTCCAGCCCAAGA < 41bp 0.672013427517483 0.873642335756557 0.73901653 0.90753144 prediction 0.403257816478148 Functional Gain - FCER1G ENSG00000158869 UTR5 Human protein_coding chr1:161185092 chr1:161185096 . . 0 25 hm5C_associated_SNPs_128996 0 0 1 0 1 FCER1G chr1:161185160 5'GT 161185160 Upstream 65bp
chr13 49795312 49795312 1 + C T OV 49795311 + 49795291 49795331 41 AGCTGTGGAGCAGCCGGCGGCCGCTGCGAGGCCCGGCCGCC AGCTGTGGAGCAGCCGGCGGCTGCTGCGAGGCCCGGCCGCC < 41bp 0.549489509099199 0.751111999301221 0.6242492 0.409702 prediction 0.403244980404045 Functional Gain - MLNR ENSG00000102539 CDS Human protein_coding chr13:49795311 chr13:49795312 nonsynonymous SNV 0.058 0 22 hm5C_associated_SNPs_128998 0 0 0 0 1 MLNR chr13:49795374 5'GT 49795374 Upstream 63bp
chr7 141896517 141896517 1 + T C GBM 141896514 + 141896494 141896534 41 TCTCAGACAGGAGCAGATATCTGTGGGTTCTTTGGAGATGC TCTCAGACAGGAGCAGATATCTGCGGGTTCTTTGGAGATGC < 41bp 0.494359559492384 0.701616269140657 0.42103878 0.90751725 prediction 0.403232538281315 Functional Gain - MGAM2 ENSG00000257743 CDS Human protein_coding chr7:141896514 chr7:141896517 synonymous SNV . 0 24 hm5C_associated_SNPs_128999 0 0 0 0 1 MGAM2 chr7:141896500 3'AG 141896500 Downstream 18bp
chrX 140983104 140983104 1 + T C LIHC 140983101 + 140983081 140983121 41 GGATGTGCTTTCCCGACTTGCACTGTGGGAGTCTGAAGGAC GGATGTGCTTTCCCGACTTGCACCGTGGGAGTCTGAAGGAC < 41bp 0.552844869466012 0.754460590276913 0.1728642 0.17850924 prediction 0.403231441621801 Functional Gain - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140983101 chrX:140983104 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_129000 0 0 0 0 2 MAGEC3 chrX:140983055 3'AG 140983055 Downstream 50bp
chrX 140983104 140983104 1 + T C LIHC 140983101 + 140983081 140983121 41 GGATGTGCTTTCCCGACTTGCACTGTGGGAGTCTGAAGGAC GGATGTGCTTTCCCGACTTGCACCGTGGGAGTCTGAAGGAC < 41bp 0.552844869466012 0.754460590276913 0.1728642 0.17850924 prediction 0.403231441621801 Functional Gain - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140983101 chrX:140983104 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_129000 0 0 0 0 2 MAGEC3 chrX:140983193 5'GT 140983193 Upstream 90bp
chr15 89172550 89172550 1 + C T UCEC 89172549 + 89172529 89172569 41 GTCCACCCTCGGAGCCAGACCCGGGATACGACCTATGTCCC GTCCACCCTCGGAGCCAGACCTGGGATACGACCTATGTCCC < 41bp 0.641434907356221 0.843048279978961 0.9454855 0.86804634 prediction 0.40322674524548 Functional Gain - AEN ENSG00000181026 CDS Human protein_coding chr15:89172549 chr15:89172550 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_129002 0 0 0 0 1 AEN chr15:89172457 3'AG 89172457 Downstream 94bp
chr5 96322349 96322349 1 + T G STAD 96322347 + 96322327 96322367 41 ATTGTGGGAGAGATGAAGAACCTGAGTCAGGACGTAAATGG ATTGTGGGAGAGATGAAGAACCGGAGTCAGGACGTAAATGG < 41bp 0.356260803983836 0.70161299199576 0.2963739 0.69323224 prediction 0.403225983991519 Functional Gain - LNPEP ENSG00000113441 CDS Human protein_coding chr5:96322347 chr5:96322349 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_129003 0 0 1 0 1 LNPEP chr5:96322374 5'GT 96322374 Upstream 26bp
chr1 117559794 117559794 1 + T A UCEC 117559790 + 117559770 117559810 41 ACTCGCCTTTCTCTGTAAGGCTGGTGGAGCTGAAAGTCCCC ACTCGCCTTTCTCTGTAAGGCTGGAGGAGCTGAAAGTCCCC < 41bp 0.703458996102574 0.905071680309801 0.6852878 0.48756164 prediction 0.403225368414452 Functional Gain - CD101 ENSG00000134256 CDS Human protein_coding chr1:117559790 chr1:117559794 synonymous SNV . 0 25 hm5C_associated_SNPs_129004 0 0 0 0 1 CD101 chr1:117559712 3'AG 117559712 Downstream 83bp
chr20 31763264 31763264 1 + C T rs145637458 31763263 + 31763243 31763283 41 AGCCTCCTTGGACCTCCTGACCGCAGTCACAATTGAAACTG AGCCTCCTTGGACCTCCTGACTGCAGTCACAATTGAAACTG < 41bp 0.633844964137733 0.835455447700164 0.2165711 0.2076661 prediction 0.403220967124863 Functional Gain - BPIFA2 ENSG00000131050 CDS Human protein_coding chr20:31763263 chr20:31763264 synonymous SNV . 0 22 hm5C_associated_SNPs_129007 0 0 0 0 1 BPIFA2 chr20:31763213 3'AG 31763213 Downstream 52bp
chr19 43920609 43920609 1 + C T SKCM 43920608 + 43920588 43920628 41 TTGTCCAGCACTCTTCACCTCCCGGCCTGATCGTGACCTCC TTGTCCAGCACTCTTCACCTCTCGGCCTGATCGTGACCTCC < 41bp 0.455636551500371 0.70160649910976 0.07282415 0.13764793 prediction 0.40321299821952 Functional Gain - TEX101 ENSG00000131126 CDS Human protein_coding chr19:43920608 chr19:43920609 nonsynonymous SNV 0.003 3 22 hm5C_associated_SNPs_129010 0 0 0 0 2 TEX101 chr19:43920525 3'AG 43920525 Downstream 85bp
chr19 43920609 43920609 1 + C T SKCM 43920608 + 43920588 43920628 41 TTGTCCAGCACTCTTCACCTCCCGGCCTGATCGTGACCTCC TTGTCCAGCACTCTTCACCTCTCGGCCTGATCGTGACCTCC < 41bp 0.455636551500371 0.70160649910976 0.07282415 0.13764793 prediction 0.40321299821952 Functional Gain - TEX101 ENSG00000131126 CDS Human protein_coding chr19:43920608 chr19:43920609 nonsynonymous SNV 0.003 3 22 hm5C_associated_SNPs_129010 0 0 0 0 2 TEX101 chr19:43920707 5'GT 43920707 Upstream 99bp
chr19 17895634 17895634 1 + C T HNSC 17895633 + 17895613 17895653 41 CAGTGGAGTACGGCTACCGGCCCGGTGCCACGGCTGTGCCC CAGTGGAGTACGGCTACCGGCTCGGTGCCACGGCTGTGCCC < 41bp 0.641766677730996 0.843370818056945 0.27471358 0.3117747 prediction 0.403208280651896 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17895633 chr19:17895634 nonsynonymous SNV 0.040 1 22 hm5C_associated_SNPs_129012 0 0 1 0 1 FCHO1 chr19:17895733 5'GT 17895733 Upstream 100bp
chr2 173679118 173679118 1 + C T STAD 173679117 + 173679097 173679137 41 AGGGAGAGCAGTGAACTGCTCCGCATCGAGCAGAAGGACTT AGGGAGAGCAGTGAACTGCTCTGCATCGAGCAGAAGGACTT < 41bp 0.634999859510428 0.836601833096451 0.08465257 0.09745404 prediction 0.403203947172047 Functional Gain - RAPGEF4 ENSG00000091428 CDS Human protein_coding chr2:173679117 chr2:173679118 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_129014 0 0 0 0 1 RAPGEF4 chr2:173679153 5'GT 173679153 Upstream 36bp
chr21 45712255 45712255 1 + C T LIHC 45712254 + 45712234 45712274 41 CAGCCCCGGGCAGAGGAGCCCCGGCCCCAGGAGCCACCCGT CAGCCCCGGGCAGAGGAGCCCTGGCCCCAGGAGCCACCCGT < 41bp 0.474149022113507 0.701600982304623 0.59673405 0.51036453 prediction 0.403201964609246 Functional Gain - AIRE ENSG00000160224 CDS Human protein_coding chr21:45712254 chr21:45712255 nonsynonymous SNV 0.002 3 22 hm5C_associated_SNPs_129016 1 0 0 0 2 AIRE chr21:45712185 3'AG 45712185 Downstream 71bp
chr21 45712255 45712255 1 + C T LIHC 45712254 + 45712234 45712274 41 CAGCCCCGGGCAGAGGAGCCCCGGCCCCAGGAGCCACCCGT CAGCCCCGGGCAGAGGAGCCCTGGCCCCAGGAGCCACCCGT < 41bp 0.474149022113507 0.701600982304623 0.59673405 0.51036453 prediction 0.403201964609246 Functional Gain - AIRE ENSG00000160224 CDS Human protein_coding chr21:45712254 chr21:45712255 nonsynonymous SNV 0.002 3 22 hm5C_associated_SNPs_129016 1 0 0 0 2 AIRE chr21:45712284 5'GT 45712284 Upstream 30bp
chr10 75672776 75672776 1 + T G UCEC 75672773 + 75672753 75672793 41 CGGCCCTGCCTGCCCTGGAACTCTGCCACTGTCCTTCAGCA CGGCCCTGCCTGCCCTGGAACTCGGCCACTGTCCTTCAGCA < 41bp 0.288780875886107 0.70159930614012 0.24061328 0.49777296 prediction 0.403198612280241 Functional Gain - PLAU ENSG00000122861 CDS Human protein_coding chr10:75672773 chr10:75672776 synonymous SNV . 0 24 hm5C_associated_SNPs_129017 0 0 0 0 2 PLAU chr10:75672682 3'AG 75672682 Downstream 95bp
chr10 75672776 75672776 1 + T G UCEC 75672773 + 75672753 75672793 41 CGGCCCTGCCTGCCCTGGAACTCTGCCACTGTCCTTCAGCA CGGCCCTGCCTGCCCTGGAACTCGGCCACTGTCCTTCAGCA < 41bp 0.288780875886107 0.70159930614012 0.24061328 0.49777296 prediction 0.403198612280241 Functional Gain - PLAU ENSG00000122861 CDS Human protein_coding chr10:75672773 chr10:75672776 synonymous SNV . 0 24 hm5C_associated_SNPs_129017 0 0 0 0 2 PLAU chr10:75672856 5'GT 75672856 Upstream 81bp
chr10 5956165 5956165 1 + T C OV 5956163 + 5956143 5956183 41 AGAAAACCATCCAACTTACACATGAACAACAGCTGATTCTG AGAAAACCATCCAACTTACACACGAACAACAGCTGATTCTG < 41bp 0.405579239364264 0.701589326427757 0.20358813 0.17126262 prediction 0.403178652855514 Functional Gain - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5956163 chr10:5956165 synonymous SNV . 0 23 hm5C_associated_SNPs_129019 0 0 1 0 2 FBXO18 chr10:5956141 3'AG 5956141 Downstream 25bp
chr10 5956165 5956165 1 + T C OV 5956163 + 5956143 5956183 41 AGAAAACCATCCAACTTACACATGAACAACAGCTGATTCTG AGAAAACCATCCAACTTACACACGAACAACAGCTGATTCTG < 41bp 0.405579239364264 0.701589326427757 0.20358813 0.17126262 prediction 0.403178652855514 Functional Gain - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5956163 chr10:5956165 synonymous SNV . 0 23 hm5C_associated_SNPs_129019 0 0 1 0 2 FBXO18 chr10:5956232 5'GT 5956232 Upstream 68bp
chr19 15726589 15726589 1 + C A rs11673150 15726588 + 15726568 15726608 41 CCTCCGGTGTTTCCCGCAGCCCCGGAAACAGAACTGGTTCT CCTCCGGTGTTTCCCGCAGCCACGGAAACAGAACTGGTTCT < 41bp 0.637584569326381 0.839169243094228 0.10429996 0.25437105 prediction 0.403169347535694 Functional Gain - CYP4F8 ENSG00000186526 ncRNA_exonic Human protein_coding chr19:15726588 chr19:15726589 . . 0 22 hm5C_associated_SNPs_129021 0 0 0 0 1 CYP4F8 chr19:15726625 5'GT 15726625 Upstream 37bp
chr2 29225589 29225589 1 + C A rs202118942 29225585 + 29225565 29225605 41 ACCGGGGAGCATTCCGGGTCCTCACGAGTTGAGACCCGGTG ACCGGGGAGCATTCCGGGTCCTCAAGAGTTGAGACCCGGTG < 41bp 0.272858028479581 0.701584573065113 0.5588196 0.7751145 prediction 0.403169146130226 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29225585 chr2:29225589 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_129022 0 0 0 0 1 TOGARAM2 chr2:29225613 5'GT 29225613 Upstream 25bp
chr3 63968684 63968684 1 + C A UCEC 63968680 + 63968660 63968700 41 ACACCAAGAAGCCCTGCACCCGGTCTTTGACATGCAAGGTA ACACCAAGAAGCCCTGCACCCGGTATTTGACATGCAAGGTA < 41bp 0.279486432321888 0.701577962078611 0.14191562 0.25759944 prediction 0.403155924157222 Functional Gain - ATXN7 ENSG00000163635 CDS Human protein_coding chr3:63968680 chr3:63968684 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_129025 0 0 1 0 2 ATXN7 chr3:63968615 3'AG 63968615 Downstream 70bp
chr3 63968684 63968684 1 + C A UCEC 63968680 + 63968660 63968700 41 ACACCAAGAAGCCCTGCACCCGGTCTTTGACATGCAAGGTA ACACCAAGAAGCCCTGCACCCGGTATTTGACATGCAAGGTA < 41bp 0.279486432321888 0.701577962078611 0.14191562 0.25759944 prediction 0.403155924157222 Functional Gain - ATXN7 ENSG00000163635 CDS Human protein_coding chr3:63968680 chr3:63968684 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_129025 0 0 1 0 2 ATXN7 chr3:63968697 5'GT 63968697 Upstream 14bp
chr10 46998946 46998946 1 + C T UCEC 46998945 + 46998925 46998965 41 CCCCCGCCTTCAGCCCCTGTCCCAGAGCTCTTCCAGCCTGC CCCCCGCCTTCAGCCCCTGTCTCAGAGCTCTTCCAGCCTGC < 41bp 0.453127687596349 0.701577555679257 0.2411181 0.1868982 prediction 0.403155111358514 Functional Gain - GPRIN2 ENSG00000204175 CDS Human protein_coding chr10:46998945 chr10:46998946 synonymous SNV . 0 22 hm5C_associated_SNPs_129026 0 0 0 0 1 GPRIN2 chr10:46998875 3'AG 46998875 Downstream 72bp
chr3 25833320 25833320 1 + A G rs75506928 25833317 + 25833297 25833337 41 GGCATGTCGACCATTTCATCCAAAGAGAGATGGTTTTGTAA GGCATGTCGACCATTTCATCCAAGGAGAGATGGTTTTGTAA < 41bp 0.451929576999795 0.701576427837259 0.07879141 0.26725835 prediction 0.403152855674517 Functional Gain - OXSM ENSG00000151093 CDS Human protein_coding chr3:25833317 chr3:25833320 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_129027 0 0 0 0 1 OXSM chr3:25833261 3'AG 25833261 Downstream 60bp
chrX 154261737 154261737 1 + T A LUAD 154261735 + 154261715 154261755 41 GGAATTTGCTAAGAAGCAGCCATGGTGGCGTAAGCTGTTCG GGAATTTGCTAAGAAGCAGCCAAGGTGGCGTAAGCTGTTCG < 41bp 0.488292643221731 0.701568197181613 0.36243832 0.6308013 prediction 0.403136394363225 Functional Gain - FUNDC2 ENSG00000165775 CDS Human protein_coding chrX:154261735 chrX:154261737 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_129030 0 0 1 0 2 FUNDC2 chrX:154261678 3'AG 154261678 Downstream 60bp
chrX 154261737 154261737 1 + T A LUAD 154261735 + 154261715 154261755 41 GGAATTTGCTAAGAAGCAGCCATGGTGGCGTAAGCTGTTCG GGAATTTGCTAAGAAGCAGCCAAGGTGGCGTAAGCTGTTCG < 41bp 0.488292643221731 0.701568197181613 0.36243832 0.6308013 prediction 0.403136394363225 Functional Gain - FUNDC2 ENSG00000165775 CDS Human protein_coding chrX:154261735 chrX:154261737 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_129030 0 0 1 0 2 FUNDC2 chrX:154261828 5'GT 154261828 Upstream 92bp
chr3 52283001 52283001 1 + C G rs148950187 52283000 + 52282980 52283020 41 ACTAGGAACACTGGCTGTCTCCCGGGGCCTGGGAGACCATC ACTAGGAACACTGGCTGTCTCGCGGGGCCTGGGAGACCATC < 41bp 0.707843933295631 0.909411885116528 0.5431026 0.91581583 prediction 0.403135903641794 Functional Gain - PPM1M ENSG00000164088 CDS Human protein_coding chr3:52283000 chr3:52283001 synonymous SNV . 0 22 hm5C_associated_SNPs_129031 0 0 0 0 2 PPM1M chr3:52282972 3'AG 52282972 Downstream 30bp
chr3 52283001 52283001 1 + C G rs148950187 52283000 + 52282980 52283020 41 ACTAGGAACACTGGCTGTCTCCCGGGGCCTGGGAGACCATC ACTAGGAACACTGGCTGTCTCGCGGGGCCTGGGAGACCATC < 41bp 0.707843933295631 0.909411885116528 0.5431026 0.91581583 prediction 0.403135903641794 Functional Gain - PPM1M ENSG00000164088 CDS Human protein_coding chr3:52283000 chr3:52283001 synonymous SNV . 0 22 hm5C_associated_SNPs_129031 0 0 0 0 2 PPM1M chr3:52283079 5'GT 52283079 Upstream 79bp
chr14 45571826 45571826 1 + C A UCEC 45571825 + 45571805 45571845 41 TGGGAAAATGAGCAGGGAAACCTGAGAGAAGTTACAGCTAT TGGGAAAATGAGCAGGGAAACATGAGAGAAGTTACAGCTAT < 41bp 0.620205673382905 0.821772915046872 0.88505816 0.88508433 prediction 0.403134483327933 Functional Gain - PRPF39 ENSG00000185246 CDS Human protein_coding chr14:45571825 chr14:45571826 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_129032 0 0 1 0 2 PRPF39 chr14:45571732 3'AG 45571732 Downstream 95bp
chr14 45571826 45571826 1 + C A UCEC 45571825 + 45571805 45571845 41 TGGGAAAATGAGCAGGGAAACCTGAGAGAAGTTACAGCTAT TGGGAAAATGAGCAGGGAAACATGAGAGAAGTTACAGCTAT < 41bp 0.620205673382905 0.821772915046872 0.88505816 0.88508433 prediction 0.403134483327933 Functional Gain - PRPF39 ENSG00000185246 CDS Human protein_coding chr14:45571825 chr14:45571826 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_129032 0 0 1 0 2 PRPF39 chr14:45571899 5'GT 45571899 Upstream 74bp
chr15 78454635 78454635 1 + T C UCEC 78454632 + 78454612 78454652 41 ACCGAGGGGGCGAGCAAGCGCATTGCTGAGTTTGCCTTTGA ACCGAGGGGGCGAGCAAGCGCATCGCTGAGTTTGCCTTTGA < 41bp 0.481917614958501 0.701562469849233 0.17968127 0.18242273 prediction 0.403124939698466 Functional Gain - IDH3A ENSG00000166411 CDS Human protein_coding chr15:78454632 chr15:78454635 synonymous SNV . 0 24 hm5C_associated_SNPs_129034 0 0 1 0 3 IDH3A chr15:78454551 3'AG 78454551 Downstream 85bp
chr15 78454635 78454635 1 + T C UCEC 78454632 + 78454612 78454652 41 ACCGAGGGGGCGAGCAAGCGCATTGCTGAGTTTGCCTTTGA ACCGAGGGGGCGAGCAAGCGCATCGCTGAGTTTGCCTTTGA < 41bp 0.481917614958501 0.701562469849233 0.17968127 0.18242273 prediction 0.403124939698466 Functional Gain - IDH3A ENSG00000166411 CDS Human protein_coding chr15:78454632 chr15:78454635 synonymous SNV . 0 24 hm5C_associated_SNPs_129034 0 0 1 0 3 IDH3A chr15:78454576 3'AG 78454576 Downstream 60bp
chr15 78454635 78454635 1 + T C UCEC 78454632 + 78454612 78454652 41 ACCGAGGGGGCGAGCAAGCGCATTGCTGAGTTTGCCTTTGA ACCGAGGGGGCGAGCAAGCGCATCGCTGAGTTTGCCTTTGA < 41bp 0.481917614958501 0.701562469849233 0.17968127 0.18242273 prediction 0.403124939698466 Functional Gain - IDH3A ENSG00000166411 CDS Human protein_coding chr15:78454632 chr15:78454635 synonymous SNV . 0 24 hm5C_associated_SNPs_129034 0 0 1 0 3 IDH3A chr15:78454709 5'GT 78454709 Upstream 75bp
chr2 113950927 113950927 1 + C T UCEC 113950926 + 113950906 113950946 41 GACGCTTCCACCATTGCAATCCGGGGATCTTCCCCTCAGTA GACGCTTCCACCATTGCAATCTGGGGATCTTCCCCTCAGTA < 41bp 0.448098813106465 0.701553692510495 0.9575504 0.9414584 prediction 0.403107385020991 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950926 chr2:113950927 nonsynonymous SNV 0.376 0 22 hm5C_associated_SNPs_129038 0 0 0 0 2 PSD4 chr2:113950835 3'AG 113950835 Downstream 93bp
chr2 113950927 113950927 1 + C T UCEC 113950926 + 113950906 113950946 41 GACGCTTCCACCATTGCAATCCGGGGATCTTCCCCTCAGTA GACGCTTCCACCATTGCAATCTGGGGATCTTCCCCTCAGTA < 41bp 0.448098813106465 0.701553692510495 0.9575504 0.9414584 prediction 0.403107385020991 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950926 chr2:113950927 nonsynonymous SNV 0.376 0 22 hm5C_associated_SNPs_129038 0 0 0 0 2 PSD4 chr2:113950947 5'GT 113950947 Upstream 21bp
chr1 183184616 183184616 1 + C T rs2274980 183184615 + 183184595 183184635 41 TAGTGCTCGATGTGACAACTCCGGACGGTGCAGCTGTAAAC TAGTGCTCGATGTGACAACTCTGGACGGTGCAGCTGTAAAC < 41bp 0.638996925297305 0.840541862109374 0.8455724 0.44090822 prediction 0.403089873624139 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183184615 chr1:183184616 synonymous SNV . 0 22 hm5C_associated_SNPs_129040 2 0 0 0 1 LAMC2 chr1:183184588 3'AG 183184588 Downstream 29bp
chr11 43918805 43918805 1 + C T UCEC 43918804 + 43918784 43918824 41 TTAGTGGAACCGCGACTGCTCCGCAGAGCTGCTGGTATGAG TTAGTGGAACCGCGACTGCTCTGCAGAGCTGCTGGTATGAG < 41bp 0.614551260935836 0.816086415643709 0.13952187 0.22827676 prediction 0.403070309415746 Functional Gain - ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43918804 chr11:43918805 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_129043 0 0 1 0 2 ALKBH3 chr11:43918745 3'AG 43918745 Downstream 61bp
chr11 43918805 43918805 1 + C T UCEC 43918804 + 43918784 43918824 41 TTAGTGGAACCGCGACTGCTCCGCAGAGCTGCTGGTATGAG TTAGTGGAACCGCGACTGCTCTGCAGAGCTGCTGGTATGAG < 41bp 0.614551260935836 0.816086415643709 0.13952187 0.22827676 prediction 0.403070309415746 Functional Gain - ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43918804 chr11:43918805 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_129043 0 0 1 0 2 SEC14L1P1 chr11:43918904 5'GT 43918904 Upstream 100bp
chr19 41084087 41084087 1 + T A LUAD 41084085 + 41084065 41084105 41 TCCACGGTTCCAGCCTCCTCCATGAAGCCCAGTTCTATGGG TCCACGGTTCCAGCCTCCTCCAAGAAGCCCAGTTCTATGGG < 41bp 0.541904160336873 0.743437707879476 0.1919187 0.5317088 prediction 0.403067095085207 Functional Gain - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41084085 chr19:41084087 nonsynonymous SNV 0.967 3 23 hm5C_associated_SNPs_129044 0 0 1 0 2 SHKBP1 chr19:41084060 3'AG 41084060 Downstream 28bp
chr19 41084087 41084087 1 + T A LUAD 41084085 + 41084065 41084105 41 TCCACGGTTCCAGCCTCCTCCATGAAGCCCAGTTCTATGGG TCCACGGTTCCAGCCTCCTCCAAGAAGCCCAGTTCTATGGG < 41bp 0.541904160336873 0.743437707879476 0.1919187 0.5317088 prediction 0.403067095085207 Functional Gain - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41084085 chr19:41084087 nonsynonymous SNV 0.967 3 23 hm5C_associated_SNPs_129044 0 0 1 0 2 SHKBP1 chr19:41084118 5'GT 41084118 Upstream 32bp
chr17 53046170 53046170 1 + A G rs556245888 53046167 + 53046147 53046187 41 GGCTACGGAGGCCGGGTTGCCAGATTACGGGTAAGTTTGCG GGCTACGGAGGCCGGGTTGCCAGGTTACGGGTAAGTTTGCG < 41bp 0.582919360579374 0.784449385609782 0.9084265 0.90841806 prediction 0.403060050060816 Functional Gain - STXBP4 ENSG00000166263 UTR5 Human protein_coding chr17:53046167 chr17:53046170 . . 0 24 hm5C_associated_SNPs_129045 0 0 1 0 1 STXBP4 chr17:53046176 5'GT 53046176 Upstream 7bp
chr10 131265559 131265559 1 + T C COAD 131265557 + 131265537 131265577 41 GCGGTGCGCACCGTTTGCGACTTGGTGAGTGTCTGGGTCGC GCGGTGCGCACCGTTTGCGACTCGGTGAGTGTCTGGGTCGC < 41bp 0.602244279703345 0.803771915298234 0.14781272 0.1787777 prediction 0.403055271189777 Functional Gain - MGMT ENSG00000170430 CDS Human protein_coding chr10:131265557 chr10:131265559 nonsynonymous SNV 0.878 1 23 hm5C_associated_SNPs_129046 0 0 1 0 1 MGMT chr10:131265560 5'GT 131265560 Upstream 2bp
chr9 98728983 98728983 1 + A G LUSC 98728980 + 98728960 98729000 41 GTCCCAAGGGTCTTGTCTTACGAAGGACATCCTGGAGGTGT GTCCCAAGGGTCTTGTCTTACGAGGGACATCCTGGAGGTGT < 41bp 0.582322884147653 0.783848793912295 0.90737665 0.94808376 prediction 0.403051819529284 Functional Gain - ERCC6L2 ENSG00000182150 CDS Human protein_coding chr9:98728980 chr9:98728983 nonsynonymous SNV 0.470 0 24 hm5C_associated_SNPs_129048 0 0 0 0 1 ERCC6L2 chr9:98728996 5'GT 98728996 Upstream 14bp
chr17 33326346 33326346 1 + C A UCEC 33326342 + 33326322 33326362 41 CCAGGCGGCATGATGTCAATCTTCCTCATGGGCTGCTACGA CCAGGCGGCATGATGTCAATCTTCATCATGGGCTGCTACGA < 41bp 0.266221961698414 0.701522037533921 0.019079596 0.014124721 prediction 0.403044075067841 Functional Gain - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33326342 chr17:33326346 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_129049 0 0 1 0 1 LIG3 chr17:33326326 3'AG 33326326 Downstream 21bp
chr4 110608723 110608723 1 + T A COAD 110608719 + 110608699 110608739 41 ATTCTCTCTGTTTGCAAATGCAAGTAGAAGAACTCAATGAA ATTCTCTCTGTTTGCAAATGCAAGAAGAAGAACTCAATGAA < 41bp 0.403385008118269 0.70151736981713 0.4116204 0.82137835 prediction 0.40303473963426 Functional Gain - MCUB ENSG00000005059 CDS Human protein_coding chr4:110608719 chr4:110608723 nonsynonymous SNV 0.450 1 25 hm5C_associated_SNPs_129050 0 0 1 0 1 MCUB chr4:110608671 3'AG 110608671 Downstream 53bp
chr16 81739204 81739204 1 + T G HNSC 81739202 + 81739182 81739222 41 ACAGACGCTGGCCTGCTGGCCCTGAGCTGTGAGTGCCTCCG ACAGACGCTGGCCTGCTGGCCCGGAGCTGTGAGTGCCTCCG < 41bp 0.343337973894199 0.701516394812095 0.22126245 0.6382662 prediction 0.40303278962419 Functional Gain - CMIP ENSG00000153815 CDS Human protein_coding chr16:81739202 chr16:81739204 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_129052 0 0 1 0 1 CMIP chr16:81739209 5'GT 81739209 Upstream 6bp
chr10 102896546 102896546 1 + C T STAD 102896545 + 102896525 102896565 41 TCCAGAAGAGCCTGGCACAGCCGCTGCCCGCTGACCCTCTG TCCAGAAGAGCCTGGCACAGCTGCTGCCCGCTGACCCTCTG < 41bp 0.610376656918454 0.811886738725795 0.22577506 0.23558208 prediction 0.403020163614682 Functional Gain - TLX1 ENSG00000107807 CDS Human protein_coding chr10:102896545 chr10:102896546 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_129054 0 0 0 0 1 TLX1 chr10:102896448 3'AG 102896448 Downstream 99bp
chr2 26505777 26505777 1 + C T PRAD 26505776 + 26505756 26505796 41 CTCTGGCCATGGGTTATAAGCCGAAGGCATATTTGAGGTAA CTCTGGCCATGGGTTATAAGCTGAAGGCATATTTGAGGTAA < 41bp 0.635465154298035 0.83696829165282 0.59411997 0.36192852 prediction 0.403006274709569 Functional Gain - HADHB ENSG00000138029 CDS Human protein_coding chr2:26505776 chr2:26505777 nonsynonymous SNV 0.987 5 22 hm5C_associated_SNPs_129057 0 0 1 0 2 HADHB chr2:26505713 3'AG 26505713 Downstream 65bp
chr2 26505777 26505777 1 + C T PRAD 26505776 + 26505756 26505796 41 CTCTGGCCATGGGTTATAAGCCGAAGGCATATTTGAGGTAA CTCTGGCCATGGGTTATAAGCTGAAGGCATATTTGAGGTAA < 41bp 0.635465154298035 0.83696829165282 0.59411997 0.36192852 prediction 0.403006274709569 Functional Gain - HADHB ENSG00000138029 CDS Human protein_coding chr2:26505776 chr2:26505777 nonsynonymous SNV 0.987 5 22 hm5C_associated_SNPs_129057 0 0 1 0 2 HADHB chr2:26505792 5'GT 26505792 Upstream 16bp
chr2 184024289 184024289 1 + T C UCEC 184024286 + 184024266 184024306 41 CTTTACACCACCAATCAAAACTCTAGGTACACCAACACAAC CTTTACACCACCAATCAAAACTCCAGGTACACCAACACAAC < 41bp 0.614231474560314 0.815732624744299 0.5859774 0.910244 prediction 0.40300230036797 Functional Gain - NUP35 ENSG00000163002 CDS Human protein_coding chr2:184024286 chr2:184024289 nonsynonymous SNV 0.969 0 24 hm5C_associated_SNPs_129058 0 0 1 0 1 NUP35 chr2:184024380 5'GT 184024380 Upstream 92bp
chr1 68962365 68962365 1 + A G rs528114739 68962362 + 68962342 68962382 41 GGGACGCCGGCCACACCAGGCACAGGAGTCGCTCCTCATAG GGGACGCCGGCCACACCAGGCACGGGAGTCGCTCCTCATAG < 41bp 0.625491861367137 0.826988665462316 0.1698182 0.5230701 prediction 0.402993608190358 Functional Gain - DEPDC1-AS1 ENSG00000234264 ncRNA_exonic Human antisense chr1:68962362 chr1:68962365 . . 0 24 hm5C_associated_SNPs_129060 0 0 0 0 1 DEPDC1-AS1 chr1:68962454 5'GT 68962454 Upstream 90bp
chr16 331867 331867 1 + C A rs149498191 331863 + 331843 331883 41 GGAGATCCGGCAGCTGGACCCGGACGACAGGAGCCTGGCCA GGAGATCCGGCAGCTGGACCCGGAAGACAGGAGCCTGGCCA < 41bp 0.733091904179797 0.934587378799344 0.8445573 0.8710096 prediction 0.402990949239092 Functional Gain - ARHGDIG ENSG00000242173 CDS Human protein_coding chr16:331863 chr16:331867 nonsynonymous SNV 0.010 0 25 hm5C_associated_SNPs_129061 0 0 0 0 1 ARHGDIG chr16:331925 5'GT 331925 Upstream 59bp
chr19 1071312 1071312 1 + C T rs4807506 1071311 + 1071291 1071331 41 TGTATCTGCGGGACGGCGCACCCGGTGCTGGACGAGGGCCC TGTATCTGCGGGACGGCGCACTCGGTGCTGGACGAGGGCCC < 41bp 0.533105328460679 0.73459907985769 0.42510477 0.2273966 prediction 0.402987502794023 Functional Gain - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1071311 chr19:1071312 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_129064 0 0 0 0 1 ARHGAP45 chr19:1071357 5'GT 1071357 Upstream 46bp
chr20 45702837 45702837 1 + C T SKCM 45702836 + 45702816 45702856 41 GCTTCCCCCAGAGCCAGTACCCCCAGTATTACGGCTCATCC GCTTCCCCCAGAGCCAGTACCTCCAGTATTACGGCTCATCC < 41bp 0.666592408944613 0.868076880814684 0.57730955 0.9630352 prediction 0.402968943740142 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45702836 chr20:45702837 nonsynonymous SNV 0.944 1 22 hm5C_associated_SNPs_129068 0 0 0 0 1 EYA2 chr20:45702797 3'AG 45702797 Downstream 41bp
chr1 55525299 55525299 1 + C T SKCM 55525298 + 55525278 55525318 41 AGCTGAGGCCAGCATGGGGACCCGTGTCCACTGCCACCAAC AGCTGAGGCCAGCATGGGGACTCGTGTCCACTGCCACCAAC < 41bp 0.451467829650084 0.701472379650803 0.6199721 0.6364937 prediction 0.402944759301606 Functional Gain - PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55525298 chr1:55525299 synonymous SNV . 0 22 hm5C_associated_SNPs_129075 0 0 0 0 1 PCSK9 chr1:55525336 5'GT 55525336 Upstream 38bp
chr14 61924350 61924350 1 + C T UCEC 61924349 + 61924329 61924369 41 AAAAGGATCCTGTCTCTGGCCCGCAATCACCCCTTCCTCAC AAAAGGATCCTGTCTCTGGCCTGCAATCACCCCTTCCTCAC < 41bp 0.650055407267795 0.851519406644057 0.07989094 0.08286771 prediction 0.402927998752523 Functional Gain - PRKCH ENSG00000027075 CDS Human protein_coding chr14:61924349 chr14:61924350 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_129079 0 0 0 0 1 PRKCH chr14:61924397 5'GT 61924397 Upstream 48bp
chr7 2645618 2645618 1 + C G rs367712182 2645617 + 2645597 2645637 41 GCTCTGCGGGCACACCTGGCCCGGGCCAGGCACAGGTGAGT GCTCTGCGGGCACACCTGGCCGGGGCCAGGCACAGGTGAGT < 41bp 0.380017726063589 0.701457877176434 0.32572165 0.8971497 prediction 0.402915754352868 Functional Gain - IQCE ENSG00000106012 CDS Human protein_coding chr7:2645617 chr7:2645618 nonsynonymous SNV 0.089 3 22 hm5C_associated_SNPs_129083 0 0 0 0 1 IQCE chr7:2645631 5'GT 2645631 Upstream 14bp
chr3 37081682 37081682 1 + C A GBM 37081681 + 37081661 37081701 41 ATTTTTTGTTTTGCAGTTCTCCGGGAGATGTTGCATAACCA ATTTTTTGTTTTGCAGTTCTCAGGGAGATGTTGCATAACCA < 41bp 0.544511389152489 0.745967539954259 0.89965224 0.91174453 prediction 0.402912301603539 Functional Gain - MLH1 ENSG00000076242 CDS Human protein_coding chr3:37081681 chr3:37081682 synonymous SNV . 0 22 hm5C_associated_SNPs_129084 0 0 1 0 1 MLH1 chr3:37081677 3'AG 37081677 Downstream 6bp
chr9 127110095 127110095 1 + C A SKCM 127110094 + 127110074 127110114 41 ACTCCCCGGGGAGCACTACTCCGAGAAGGTGAGTTTGCAGG ACTCCCCGGGGAGCACTACTCAGAGAAGGTGAGTTTGCAGG < 41bp 0.658737296900316 0.860182609845198 0.81643164 0.93001515 prediction 0.402890625889764 Functional Gain - NEK6 ENSG00000119408 CDS Human protein_coding chr9:127110094 chr9:127110095 synonymous SNV . 0 22 hm5C_associated_SNPs_129087 0 0 1 0 1 NEK6 chr9:127110101 5'GT 127110101 Upstream 7bp
chr22 25598754 25598754 1 + C T UCEC 25598753 + 25598733 25598773 41 GGGCTCCATCCAAGTGGAGTCCGGGCCGTGAGTACCTAGAC GGGCTCCATCCAAGTGGAGTCTGGGCCGTGAGTACCTAGAC < 41bp 0.609108397319511 0.810553280350101 0.53098637 0.5414892 prediction 0.40288976606118 Functional Gain - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25598753 chr22:25598754 synonymous SNV . 0 22 hm5C_associated_SNPs_129088 0 0 0 0 1 CRYBB3 chr22:25598759 5'GT 25598759 Upstream 6bp
chr2 219232463 219232463 1 + C T rs150944493 219232462 + 219232442 219232482 41 CAGGAGGAGCTCCGGCTCGGCCACGCCAGCTATCTGCGGCA CAGGAGGAGCTCCGGCTCGGCTACGCCAGCTATCTGCGGCA < 41bp 0.478196521240662 0.701444121358437 0.16146034 0.25892514 prediction 0.402888242716874 Functional Gain - CATIP ENSG00000158428 CDS Human protein_coding chr2:219232462 chr2:219232463 nonsynonymous SNV 0.488 1 22 hm5C_associated_SNPs_129089 0 0 0 0 1 CATIP chr2:219232445 3'AG 219232445 Downstream 19bp
chr19 56388486 56388486 1 + T C UCEC 56388483 + 56388463 56388503 41 TCGGAGATGTGGGTGTGCAGCTGTTGTGTCGGGCTCTGACG TCGGAGATGTGGGTGTGCAGCTGCTGTGTCGGGCTCTGACG < 41bp 0.489002493715127 0.701434942665728 0.20748657 0.15509012 prediction 0.402869885331456 Functional Gain - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56388483 chr19:56388486 synonymous SNV . 0 24 hm5C_associated_SNPs_129091 0 0 0 0 1 NLRP4 chr19:56388532 5'GT 56388532 Upstream 47bp
chr10 114910854 114910854 1 + C T COAD 114910853 + 114910833 114910873 41 ACAGTCAAACAGGAATCGTCCCAGAGTGATGTCGGCTCACT ACAGTCAAACAGGAATCGTCCTAGAGTGATGTCGGCTCACT < 41bp 0.592121465843253 0.793553075485463 0.24081594 0.18079555 prediction 0.40286321928442 Functional Gain - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114910853 chr10:114910854 stopgain 1.000 1 22 hm5C_associated_SNPs_129093 0 0 1 0 2 TCF7L2 chr10:114910757 3'AG 114910757 Downstream 98bp
chr10 114910854 114910854 1 + C T COAD 114910853 + 114910833 114910873 41 ACAGTCAAACAGGAATCGTCCCAGAGTGATGTCGGCTCACT ACAGTCAAACAGGAATCGTCCTAGAGTGATGTCGGCTCACT < 41bp 0.592121465843253 0.793553075485463 0.24081594 0.18079555 prediction 0.40286321928442 Functional Gain - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114910853 chr10:114910854 stopgain 1.000 1 22 hm5C_associated_SNPs_129093 0 0 1 0 2 TCF7L2 chr10:114910882 5'GT 114910882 Upstream 29bp
chr1 11835613 11835613 1 + C T rs180712812 11835612 + 11835592 11835632 41 TGGGTGCGGATGAAGCAGCTCCGGGAATCAGATGGGGCAAA TGGGTGCGGATGAAGCAGCTCTGGGAATCAGATGGGGCAAA < 41bp 0.489526991768793 0.701431596154539 0.6740415 0.29477507 prediction 0.402863192309079 Functional Gain - C1orf167 ENSG00000215910 CDS Human protein_coding chr1:11835612 chr1:11835613 nonsynonymous SNV 0.044 1 22 hm5C_associated_SNPs_129094 0 0 0 0 1 C1orf167 chr1:11835667 5'GT 11835667 Upstream 55bp
chr16 1292165 1292165 1 + C T rs535832377 1292164 + 1292144 1292184 41 GGGGCGAGGGCTGTGCCCAGCCCAACCGGCCTGGCATCTAC GGGGCGAGGGCTGTGCCCAGCTCAACCGGCCTGGCATCTAC < 41bp 0.617775798516524 0.819206430762761 0.14253965 0.6016927 prediction 0.402861264492475 Functional Gain - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1292164 chr16:1292165 nonsynonymous SNV 0.019 1 22 hm5C_associated_SNPs_129095 0 0 0 0 1 TPSAB1 chr16:1292077 3'AG 1292077 Downstream 89bp
chr8 48878888 48878888 1 + C G UCEC 48878887 + 48878867 48878907 41 ACCGCGGCCGCATTGCAGAGCCCAGTGTGTGCGGGCGCTGC ACCGCGGCCGCATTGCAGAGCGCAGTGTGTGCGGGCGCTGC < 41bp 0.36880468715449 0.701428426993786 0.33363765 0.4277224 prediction 0.402856853987573 Functional Gain - MCM4 ENSG00000104738 CDS Human protein_coding chr8:48878887 chr8:48878888 nonsynonymous SNV 0.091 4 22 hm5C_associated_SNPs_129097 0 0 1 0 1 MCM4 chr8:48878967 5'GT 48878967 Upstream 80bp
chr16 68713872 68713872 1 + C T LUSC 68713871 + 68713851 68713891 41 GTCATCTCCAGTGGCCTGGACCGGGAAGTGAGTGGCCCTTA GTCATCTCCAGTGGCCTGGACTGGGAAGTGAGTGGCCCTTA < 41bp 0.618613177612978 0.820038741397688 0.8111671 0.522873 prediction 0.40285112756942 Functional Gain - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68713871 chr16:68713872 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_129099 0 0 0 0 1 CDH3 chr16:68713877 5'GT 68713877 Upstream 6bp
chr11 61205522 61205522 1 + A G LUSC 61205519 + 61205499 61205539 41 AGCACATGACAGAAAAGCAGCTGAACCTCTATGACCGCCTG AGCACATGACAGAAAAGCAGCTGGACCTCTATGACCGCCTG < 41bp 0.591054378678307 0.792475091721939 0.7543997 0.26684362 prediction 0.402841426087264 Functional Gain - SDHAF2 ENSG00000167985;ENSG00000256591 CDS Human other chr11:61205519 chr11:61205522 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_129101 0 0 1 0 2 SDHAF2 chr11:61205476 3'AG 61205476 Downstream 47bp
chr11 61205522 61205522 1 + A G LUSC 61205519 + 61205499 61205539 41 AGCACATGACAGAAAAGCAGCTGAACCTCTATGACCGCCTG AGCACATGACAGAAAAGCAGCTGGACCTCTATGACCGCCTG < 41bp 0.591054378678307 0.792475091721939 0.7543997 0.26684362 prediction 0.402841426087264 Functional Gain - SDHAF2 ENSG00000167985;ENSG00000256591 CDS Human other chr11:61205519 chr11:61205522 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_129101 0 0 1 0 2 SDHAF2 chr11:61205585 5'GT 61205585 Upstream 64bp
chr10 134884576 134884576 1 + C A LUAD 134884572 + 134884552 134884592 41 GTCACCAGACAGCCGGGGCCCAACCGCTGGGGGCCACACCC GTCACCAGACAGCCGGGGCCCAACAGCTGGGGGCCACACCC < 41bp 0.336052172523437 0.70141553883688 0.37849742 0.2838455 prediction 0.40283107767376 Functional Gain - LINC01168;ADGRA1-AS1 ENSG00000197177 CDS Human protein_coding chr10:134884572 chr10:134884576 synonymous SNV . 0 25 hm5C_associated_SNPs_129104 0 0 0 0 1 LINC01168;ADGRA1-AS1 chr10:134884654 5'GT 134884654 Upstream 79bp
chr19 19606981 19606981 1 + C T UCEC 19606980 + 19606960 19607000 41 ATCATCCAGCAGGGCCTCATCCGCGTCGCCAATGTTCCCAA ATCATCCAGCAGGGCCTCATCTGCGTCGCCAATGTTCCCAA < 41bp 0.648736294982037 0.850151318310488 0.48856023 0.25968093 prediction 0.402830046656902 Functional Gain - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19606980 chr19:19606981 nonsynonymous SNV 0.981 4 22 hm5C_associated_SNPs_129105 0 0 1 0 1 GATAD2A chr19:19607028 5'GT 19607028 Upstream 48bp
chr8 22265945 22265945 1 + C A STAD 22265944 + 22265924 22265964 41 GCTGGATTCCCGGGCCTGCACCTCGGAGAACCAGGAAAACG GCTGGATTCCCGGGCCTGCACATCGGAGAACCAGGAAAACG < 41bp 0.439675572417572 0.701408084973471 0.48908868 0.5858865 prediction 0.402816169946941 Functional Gain - SLC39A14 ENSG00000104635 CDS Human protein_coding chr8:22265944 chr8:22265945 synonymous SNV . 0 22 hm5C_associated_SNPs_129107 0 0 1 0 1 SLC39A14 chr8:22266009 5'GT 22266009 Upstream 65bp
chr5 176873879 176873879 1 + C A rs111752154 176873878 + 176873858 176873898 41 CCGGGCCGCCGCCGCCTCCCCCCGCAGGCCCGGGGCTCTGT CCGGGCCGCCGCCGCCTCCCCACGCAGGCCCGGGGCTCTGT < 41bp 0.588904734448741 0.790308866857404 0.2697557 0.38460177 prediction 0.402808264817327 Functional Gain - PRR7-AS1 ENSG00000246334 ncRNA_intronic Human antisense chr5:176873878 chr5:176873879 . . 0 22 hm5C_associated_SNPs_129109 0 0 1 0 1 PRR7-AS1 chr5:176873961 5'GT 176873961 Upstream 83bp
chr7 150066008 150066008 1 + T C rs3735166 150066006 + 150065986 150066026 41 GGCTCCATGGACGGGCGCCGCGTCCCTGCACAGCCCGCCGC GGCTCCATGGACGGGCGCCGCGCCCCTGCACAGCCCGCCGC < 41bp 0.520472763851245 0.721872678058347 0.059596986 0.03483388 prediction 0.402799828414205 Functional Gain - REPIN1 ENSG00000214022 CDS Human protein_coding chr7:150066006 chr7:150066008 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_129110 0 0 1 0 1 REPIN1 chr7:150066030 5'GT 150066030 Upstream 23bp
chr19 50985180 50985180 1 + C G rs57237609 50985179 + 50985159 50985199 41 GCGTCCTGCTGCGCCAGGGCCCGCGCCACCGCCACAGGAGG GCGTCCTGCTGCGCCAGGGCCGGCGCCACCGCCACAGGAGG < 41bp 0.387364530823902 0.701388019162469 0.5500596 0.8988154 prediction 0.402776038324937 Functional Gain - EMC10 ENSG00000161671 CDS Human protein_coding chr19:50985179 chr19:50985180 synonymous SNV . 0 22 hm5C_associated_SNPs_129117 0 0 0 0 2 EMC10 chr19:50985118 3'AG 50985118 Downstream 63bp
chr19 50985180 50985180 1 + C G rs57237609 50985179 + 50985159 50985199 41 GCGTCCTGCTGCGCCAGGGCCCGCGCCACCGCCACAGGAGG GCGTCCTGCTGCGCCAGGGCCGGCGCCACCGCCACAGGAGG < 41bp 0.387364530823902 0.701388019162469 0.5500596 0.8988154 prediction 0.402776038324937 Functional Gain - EMC10 ENSG00000161671 CDS Human protein_coding chr19:50985179 chr19:50985180 synonymous SNV . 0 22 hm5C_associated_SNPs_129117 0 0 0 0 2 EMC10 chr19:50985204 5'GT 50985204 Upstream 25bp
chr8 101252680 101252680 1 + T C rs6511 101252678 + 101252658 101252698 41 AGACCTGCAGGGGAGGTCTCCATGGGATGCCTTGCTTCTGA AGACCTGCAGGGGAGGTCTCCACGGGATGCCTTGCTTCTGA < 41bp 0.656702010869048 0.858088608119174 0.8936554 0.9053211 prediction 0.402773194500251 Functional Gain - SPAG1 ENSG00000104450 CDS Human protein_coding chr8:101252678 chr8:101252680 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_129118 1 0 0 0 1 SPAG1 chr8:101252631 3'AG 101252631 Downstream 50bp
chr19 48284391 48284391 1 + C T UCEC 48284390 + 48284370 48284410 41 CGAGGGAACTCCCCAGGCCACCGGGTTCTTTGAAGTGATGG CGAGGGAACTCCCCAGGCCACTGGGTTCTTTGAAGTGATGG < 41bp 0.620471334218602 0.82185515780568 0.69861996 0.30864978 prediction 0.402767647174157 Functional Gain - SELENOW ENSG00000178980 CDS Human protein_coding chr19:48284390 chr19:48284391 synonymous SNV . 0 22 hm5C_associated_SNPs_129122 0 0 1 0 2 SELENOW chr19:48284365 3'AG 48284365 Downstream 27bp
chr19 48284391 48284391 1 + C T UCEC 48284390 + 48284370 48284410 41 CGAGGGAACTCCCCAGGCCACCGGGTTCTTTGAAGTGATGG CGAGGGAACTCCCCAGGCCACTGGGTTCTTTGAAGTGATGG < 41bp 0.620471334218602 0.82185515780568 0.69861996 0.30864978 prediction 0.402767647174157 Functional Gain - SELENOW ENSG00000178980 CDS Human protein_coding chr19:48284390 chr19:48284391 synonymous SNV . 0 22 hm5C_associated_SNPs_129122 0 0 1 0 2 SELENOW chr19:48284439 5'GT 48284439 Upstream 49bp
chr2 9580739 9580739 1 + C T STAD 9580738 + 9580718 9580758 41 AATGCCATGAATGACAAAATCCGCAAACAGATCAACATCAA AATGCCATGAATGACAAAATCTGCAAACAGATCAACATCAA < 41bp 0.642259518147709 0.843640646291656 0.029595047 0.07416731 prediction 0.402762256287896 Functional Gain - CPSF3 ENSG00000119203 CDS Human protein_coding chr2:9580738 chr2:9580739 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_129123 0 0 1 0 1 CPSF3 chr2:9580795 5'GT 9580795 Upstream 57bp
chr16 28846967 28846967 1 + C T UCEC 28846966 + 28846946 28846986 41 GCACGCCGCCCTCTCTGCCACCGGGACCTTCTGCCCAGTCC GCACGCCGCCCTCTCTGCCACTGGGACCTTCTGCCCAGTCC < 41bp 0.621584980964119 0.822964899089552 0.65013385 0.45444402 prediction 0.402759836250866 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28846966 chr16:28846967 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_129124 0 0 1 0 1 ATXN2L chr16:28846870 3'AG 28846870 Downstream 98bp
chr11 65726680 65726680 1 + T C UCEC 65726678 + 65726658 65726698 41 CAGGCCAATGCCCGGCTCACCGTCACTCGGCGCTTCTCCCA CAGGCCAATGCCCGGCTCACCGCCACTCGGCGCTTCTCCCA < 41bp 0.667424246111173 0.868803484912817 0.45858228 0.90489846 prediction 0.402758477603287 Functional Gain - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65726678 chr11:65726680 unknown 0.002 0 23 hm5C_associated_SNPs_129125 0 0 0 0 1 TSGA10IP chr11:65726661 3'AG 65726661 Downstream 20bp
chr14 63671680 63671680 1 + C A LUSC 63671679 + 63671659 63671699 41 TGTGGTGGTGGGGGACGGTGCCGTGGGGAAAACCTGCCTGC TGTGGTGGTGGGGGACGGTGCAGTGGGGAAAACCTGCCTGC < 41bp 0.645031940417772 0.846408614525355 0.75717604 0.8407366 prediction 0.402753348215165 Functional Gain - RHOJ ENSG00000126785 CDS Human protein_coding chr14:63671679 chr14:63671680 synonymous SNV . 0 22 hm5C_associated_SNPs_129127 0 0 0 0 1 RHOJ chr14:63671765 5'GT 63671765 Upstream 86bp
chr7 6821050 6821050 1 + T C rs140658665 6821047 + 6821027 6821067 41 TATCTCGCTTACTGCAGACCCAGTGCAGCGCCTCCCCACGA TATCTCGCTTACTGCAGACCCAGCGCAGCGCCTCCCCACGA < 41bp 0.561212757882266 0.762585430824213 0.5586687 0.19230798 prediction 0.402745345883895 Functional Gain - RSPH10B;RSPH10B2 ENSG00000169402 CDS Human protein_coding chr7:6821047 chr7:6821050 synonymous SNV . 0 24 hm5C_associated_SNPs_129128 0 0 0 0 2 RSPH10B;RSPH10B2 chr7:6820959 3'AG 6820959 Downstream 92bp
chr7 6821050 6821050 1 + T C rs140658665 6821047 + 6821027 6821067 41 TATCTCGCTTACTGCAGACCCAGTGCAGCGCCTCCCCACGA TATCTCGCTTACTGCAGACCCAGCGCAGCGCCTCCCCACGA < 41bp 0.561212757882266 0.762585430824213 0.5586687 0.19230798 prediction 0.402745345883895 Functional Gain - RSPH10B;RSPH10B2 ENSG00000169402 CDS Human protein_coding chr7:6821047 chr7:6821050 synonymous SNV . 0 24 hm5C_associated_SNPs_129128 0 0 0 0 2 RSPH10B;RSPH10B2 chr7:6821107 5'GT 6821107 Upstream 58bp
chr11 3657344 3657344 1 + C A SARC 3657343 + 3657323 3657363 41 TCTTCCCATTCCAGGCCAATCCCAGGGCAGGGGCTGTGCCT TCTTCCCATTCCAGGCCAATCACAGGGCAGGGGCTGTGCCT < 41bp 0.444912628616578 0.701372573750909 0.35162017 0.5232189 prediction 0.402745147501818 Functional Gain - TRPC2 ENSG00000182048 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3657343 chr11:3657344 . . 0 22 hm5C_associated_SNPs_129129 0 0 0 0 1 TRPC2 chr11:3657337 3'AG 3657337 Downstream 8bp
chrX 48336857 48336857 1 + C T UCEC 48336856 + 48336836 48336876 41 GGCGTGACACGGGCAGTTGACCTGTGTGCAGCCCCAGGCAG GGCGTGACACGGGCAGTTGACTTGTGTGCAGCCCCAGGCAG < 41bp 0.615409594789909 0.816781140617056 0.298357 0.4210509 prediction 0.402743091654293 Functional Gain - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48336856 chrX:48336857 synonymous SNV . 0 22 hm5C_associated_SNPs_129130 0 0 1 0 2 FTSJ1 chrX:48336837 3'AG 48336837 Downstream 21bp
chrX 48336857 48336857 1 + C T UCEC 48336856 + 48336836 48336876 41 GGCGTGACACGGGCAGTTGACCTGTGTGCAGCCCCAGGCAG GGCGTGACACGGGCAGTTGACTTGTGTGCAGCCCCAGGCAG < 41bp 0.615409594789909 0.816781140617056 0.298357 0.4210509 prediction 0.402743091654293 Functional Gain - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48336856 chrX:48336857 synonymous SNV . 0 22 hm5C_associated_SNPs_129130 0 0 1 0 2 FTSJ1 chrX:48336906 5'GT 48336906 Upstream 50bp
chr5 156675899 156675899 1 + C T SKCM 156675898 + 156675878 156675918 41 TTTTCAGTGAAGGCAAAATCCCGTATGAAAACCGAAGCAAC TTTTCAGTGAAGGCAAAATCCTGTATGAAAACCGAAGCAAC < 41bp 0.43766170816462 0.701365591863078 0.15813231 0.29124045 prediction 0.402731183726156 Functional Gain - ITK ENSG00000113263 CDS Human protein_coding chr5:156675898 chr5:156675899 nonsynonymous SNV 0.987 5 22 hm5C_associated_SNPs_129134 0 0 0 0 1 ITK chr5:156675860 3'AG 156675860 Downstream 40bp
chr19 10395489 10395489 1 + C G rs112301533 10395488 + 10395468 10395508 41 GACTGGACGAGAGGGATTGTCCGGGAAACTGGACGTGGCCA GACTGGACGAGAGGGATTGTCGGGGAAACTGGACGTGGCCA < 41bp 0.701501968901664 0.902860509804536 0.896294 0.9430833 prediction 0.402717081805744 Functional Gain - ICAM1 ENSG00000090339 CDS Human protein_coding chr19:10395488 chr19:10395489 nonsynonymous SNV 0.024 3 22 hm5C_associated_SNPs_129136 0 0 1 0 1 ICAM1 chr19:10395459 3'AG 10395459 Downstream 31bp
chr19 17983403 17983403 1 + T G UCEC 17983401 + 17983381 17983421 41 CTCAAGTTCCTCTGGATGTGCCTGGGCCAGCTTCTGAACTC CTCAAGTTCCTCTGGATGTGCCGGGGCCAGCTTCTGAACTC < 41bp 0.33436214943933 0.701356107851631 0.30458868 0.9137205 prediction 0.402712215703262 Functional Gain - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17983401 chr19:17983403 nonsynonymous SNV 0.703 3 23 hm5C_associated_SNPs_129137 0 0 0 0 1 SLC5A5 chr19:17983485 5'GT 17983485 Upstream 83bp
chr2 30480360 30480360 1 + T C THYM 30480357 + 30480337 30480377 41 ACTGAAGGACCGTCTGCCCTCCATAGTGGTGGAACCCACAG ACTGAAGGACCGTCTGCCCTCCACAGTGGTGGAACCCACAG < 41bp 0.554846244078086 0.756200087835382 0.27761698 0.32187408 prediction 0.402707687514591 Functional Gain - LBH ENSG00000213626 CDS Human protein_coding chr2:30480357 chr2:30480360 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_129138 0 0 1 0 1 LBH chr2:30480299 3'AG 30480299 Downstream 62bp
chr7 101188671 101188671 1 + C T rs369139322 101188670 + 101188650 101188690 41 TCCTGGAGAGATGGGGCGCCCCGGCCCCCCAGGACCACCCG TCCTGGAGAGATGGGGCGCCCTGGCCCCCCAGGACCACCCG < 41bp 0.576570637969911 0.777923936791112 0.90711427 0.9047155 prediction 0.402706597642402 Functional Gain - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188670 chr7:101188671 synonymous SNV . 0 22 hm5C_associated_SNPs_129139 0 0 0 0 1 COL26A1 chr7:101188619 3'AG 101188619 Downstream 53bp
chr6 117589362 117589362 1 + C A rs61746898 117589361 + 117589341 117589381 41 ACAGAAACTAGCCTATTATTCCAAAATGCAGGAAGCGCAGG ACAGAAACTAGCCTATTATTCAAAAATGCAGGAAGCGCAGG < 41bp 0.428212693621435 0.701352404765486 0.20159951 0.17541602 prediction 0.402704809530972 Functional Gain - VGLL2 ENSG00000170162 CDS Human protein_coding chr6:117589361 chr6:117589362 synonymous SNV . 0 22 hm5C_associated_SNPs_129140 0 0 0 0 1 VGLL2 chr6:117589345 3'AG 117589345 Downstream 18bp
chr12 104149118 104149118 1 + C T UCEC 104149117 + 104149097 104149137 41 CTCAGCAGGCTGGCTGGAGACCGGGCGGGTTGCCTACCCCA CTCAGCAGGCTGGCTGGAGACTGGGCGGGTTGCCTACCCCA < 41bp 0.563531434730315 0.764878654501827 0.90814656 0.90465546 prediction 0.402694439543024 Functional Gain - STAB2 ENSG00000136011 CDS Human protein_coding chr12:104149117 chr12:104149118 synonymous SNV . 0 22 hm5C_associated_SNPs_129145 0 0 0 0 1 STAB2 chr12:104149080 3'AG 104149080 Downstream 39bp
chr12 72866951 72866951 1 + C A SARC 72866947 + 72866927 72866967 41 TGGTACAGACTACCTCTATCCTGGCTGGAACATGGTAAGTG TGGTACAGACTACCTCTATCCTGGATGGAACATGGTAAGTG < 41bp 0.299294034368313 0.701343576599281 0.25359285 0.46505755 prediction 0.402687153198561 Functional Gain - TRHDE ENSG00000072657 CDS Human protein_coding chr12:72866947 chr12:72866951 synonymous SNV . 0 25 hm5C_associated_SNPs_129147 0 0 0 0 1 TRHDE chr12:72866960 5'GT 72866960 Upstream 10bp
chr9 130095381 130095381 1 + T C UCEC 130095379 + 130095359 130095399 41 TAAAGGGCTGGACGGGCTACCGTGGCGGTCTGGATACCAAA TAAAGGGCTGGACGGGCTACCGCGGCGGTCTGGATACCAAA < 41bp 0.418293452134876 0.701340778321177 0.6058865 0.9012078 prediction 0.402681556642355 Functional Gain - GARNL3 ENSG00000136895 CDS Human protein_coding chr9:130095379 chr9:130095381 synonymous SNV . 0 23 hm5C_associated_SNPs_129149 0 0 1 0 2 GARNL3 chr9:130095302 3'AG 130095302 Downstream 80bp
chr9 130095381 130095381 1 + T C UCEC 130095379 + 130095359 130095399 41 TAAAGGGCTGGACGGGCTACCGTGGCGGTCTGGATACCAAA TAAAGGGCTGGACGGGCTACCGCGGCGGTCTGGATACCAAA < 41bp 0.418293452134876 0.701340778321177 0.6058865 0.9012078 prediction 0.402681556642355 Functional Gain - GARNL3 ENSG00000136895 CDS Human protein_coding chr9:130095379 chr9:130095381 synonymous SNV . 0 23 hm5C_associated_SNPs_129149 0 0 1 0 2 GARNL3 chr9:130095400 5'GT 130095400 Upstream 20bp
chr2 28117490 28117490 1 + C T LAML 28117489 + 28117469 28117509 41 CCTTTCATATCTAGCGTGGTCCGGAATGGAAAAGTGGGACT CCTTTCATATCTAGCGTGGTCTGGAATGGAAAAGTGGGACT < 41bp 0.60643721372749 0.807769698878891 0.025891244 0.026319772 prediction 0.402664970302802 Functional Gain - BABAM2 ENSG00000158019 CDS Human protein_coding chr2:28117489 chr2:28117490 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_129151 0 0 1 0 2 BABAM2 chr2:28117400 3'AG 28117400 Downstream 91bp
chr2 28117490 28117490 1 + C T LAML 28117489 + 28117469 28117509 41 CCTTTCATATCTAGCGTGGTCCGGAATGGAAAAGTGGGACT CCTTTCATATCTAGCGTGGTCTGGAATGGAAAAGTGGGACT < 41bp 0.60643721372749 0.807769698878891 0.025891244 0.026319772 prediction 0.402664970302802 Functional Gain - BABAM2 ENSG00000158019 CDS Human protein_coding chr2:28117489 chr2:28117490 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_129151 0 0 1 0 2 BABAM2 chr2:28117551 5'GT 28117551 Upstream 62bp
chr11 720164 720164 1 + C T LUAD 720163 + 720143 720183 41 TCCAAGGAGAAGATCTGGACCCAGGAGATGCTGCTGCAGGT TCCAAGGAGAAGATCTGGACCTAGGAGATGCTGCTGCAGGT < 41bp 0.457373273262106 0.701332257446375 0.41346088 0.087265074 prediction 0.40266451489275 Functional Gain - EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:720163 chr11:720164 stopgain 0.985 1 22 hm5C_associated_SNPs_129152 0 0 1 0 1 EPS8L2 chr11:720223 5'GT 720223 Upstream 60bp
chr12 52450341 52450341 1 + C T SKCM 52450340 + 52450320 52450360 41 CTTCAAAACCCAAGCAGCCCCCAGATGCCTCCCCTGCCAAT CTTCAAAACCCAAGCAGCCCCTAGATGCCTCCCCTGCCAAT < 41bp 0.654557226343139 0.855889002554787 0.48368165 0.41517615 prediction 0.402663552423294 Functional Gain - NR4A1 ENSG00000123358 CDS Human protein_coding chr12:52450340 chr12:52450341 nonsynonymous SNV 0.791 0 22 hm5C_associated_SNPs_129153 0 0 0 0 1 NR4A1 chr12:52450429 5'GT 52450429 Upstream 89bp
chr1 163310200 163310200 1 + A G LUAD 163310197 + 163310177 163310217 41 CCAAAAGAAGTCAAATATTTCAGAGAAAACCAAGCGTTTGG CCAAAAGAAGTCAAATATTTCAGGGAAAACCAAGCGTTTGG < 41bp 0.589923405865314 0.791254614687544 0.46559852 0.8111998 prediction 0.402662417644459 Functional Gain - NUF2 ENSG00000143228 CDS Human protein_coding chr1:163310197 chr1:163310200 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_129154 0 0 1 0 2 NUF2 chr1:163310154 3'AG 163310154 Downstream 47bp
chr1 163310200 163310200 1 + A G LUAD 163310197 + 163310177 163310217 41 CCAAAAGAAGTCAAATATTTCAGAGAAAACCAAGCGTTTGG CCAAAAGAAGTCAAATATTTCAGGGAAAACCAAGCGTTTGG < 41bp 0.589923405865314 0.791254614687544 0.46559852 0.8111998 prediction 0.402662417644459 Functional Gain - NUF2 ENSG00000143228 CDS Human protein_coding chr1:163310197 chr1:163310200 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_129154 0 0 1 0 2 NUF2 chr1:163310216 5'GT 163310216 Upstream 17bp
chr16 610657 610657 1 + C A rs188024646 610653 + 610633 610673 41 TTGGCGGCTCCGCTCCCGGCCGGGCGCAGGTAGGAGCGGCG TTGGCGGCTCCGCTCCCGGCCGGGAGCAGGTAGGAGCGGCG < 41bp 0.630344062592732 0.831669454432206 0.6590975 0.8149623 prediction 0.402650783678949 Functional Gain - PRR35 ENSG00000161992 UTR5 Human protein_coding chr16:610653 chr16:610657 . . 0 25 hm5C_associated_SNPs_129155 0 0 0 0 1 PRR35 chr16:610661 5'GT 610661 Upstream 5bp
chr6 71567719 71567719 1 + T G UCEC 71567715 + 71567695 71567735 41 GATGGGCGTGCCTGTGCCTGCAGCTCCTGGCCTTATAGGAA GATGGGCGTGCCTGTGCCTGCAGCGCCTGGCCTTATAGGAA < 41bp 0.491901950137095 0.701317870738325 0.25288367 0.25530398 prediction 0.40263574147665 Functional Gain - SMAP1 ENSG00000112305 CDS Human protein_coding chr6:71567715 chr6:71567719 synonymous SNV . 0 25 hm5C_associated_SNPs_129161 0 0 1 0 1 SMAP1 chr6:71567625 3'AG 71567625 Downstream 95bp
chr17 4803597 4803597 1 + C A rs141527391 4803593 + 4803573 4803613 41 CGGCAGCGCGGGCCCAGCCCCAGACGGCAGGGATCCGGGTG CGGCAGCGCGGGCCCAGCCCCAGAAGGCAGGGATCCGGGTG < 41bp 0.730262089387424 0.931573190969714 0.613851 0.78702277 prediction 0.40262220316458 Functional Gain - C17orf107 ENSG00000205710 CDS Human protein_coding chr17:4803593 chr17:4803597 nonsynonymous SNV 0.039 1 25 hm5C_associated_SNPs_129164 0 0 0 0 1 C17orf107 chr17:4803532 3'AG 4803532 Downstream 66bp
chr1 247607998 247607998 1 + C A LUAD 247607997 + 247607977 247608017 41 ACACTGCTGCTGGGATCTTTCCACACTTCTGACCTCCAGCC ACACTGCTGCTGGGATCTTTCAACACTTCTGACCTCCAGCC < 41bp 0.640841004779014 0.842150709605202 0.122909606 0.16309962 prediction 0.402619409652376 Functional Gain - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247607997 chr1:247607998 synonymous SNV . 0 22 hm5C_associated_SNPs_129166 0 0 0 0 1 NLRP3 chr1:247607953 3'AG 247607953 Downstream 46bp
chr9 6253566 6253566 1 + A G UCEC 6253563 + 6253543 6253583 41 CTCTTTCAGATAAGGTGTTACTGAGTTACTATGAGTCTCAA CTCTTTCAGATAAGGTGTTACTGGGTTACTATGAGTCTCAA < 41bp 0.589714307718152 0.791012605028038 0.19997466 0.37909344 prediction 0.402596594619772 Functional Gain - IL33 ENSG00000137033 CDS Human protein_coding chr9:6253563 chr9:6253566 nonsynonymous SNV 0.400 0 24 hm5C_associated_SNPs_129171 0 0 0 0 2 IL33 chr9:6253552 3'AG 6253552 Downstream 15bp
chr9 6253566 6253566 1 + A G UCEC 6253563 + 6253543 6253583 41 CTCTTTCAGATAAGGTGTTACTGAGTTACTATGAGTCTCAA CTCTTTCAGATAAGGTGTTACTGGGTTACTATGAGTCTCAA < 41bp 0.589714307718152 0.791012605028038 0.19997466 0.37909344 prediction 0.402596594619772 Functional Gain - IL33 ENSG00000137033 CDS Human protein_coding chr9:6253563 chr9:6253566 nonsynonymous SNV 0.400 0 24 hm5C_associated_SNPs_129171 0 0 0 0 2 IL33 chr9:6253602 5'GT 6253602 Upstream 37bp
chr19 50910610 50910610 1 + C T rs2230248 50910609 + 50910589 50910629 41 GCACGAGGGGCTGCTGATGCCCGTGGTGAAGTCAGAGGGCG GCACGAGGGGCTGCTGATGCCTGTGGTGAAGTCAGAGGGCG < 41bp 0.456788227404036 0.701297001100589 0.31637165 0.3941056 prediction 0.402594002201179 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50910609 chr19:50910610 synonymous SNV . 0 22 hm5C_associated_SNPs_129173 2 0 1 0 1 POLD1 chr19:50910584 3'AG 50910584 Downstream 27bp
chr11 2418102 2418102 1 + C T rs188175983 2418101 + 2418081 2418121 41 CAGCTCCGTGTACTGAGGCCCCGCAGCTCTGGCCACAGGGA CAGCTCCGTGTACTGAGGCCCTGCAGCTCTGGCCACAGGGA < 41bp 0.586744145815013 0.788036992699788 0.015526354 0.048568815 prediction 0.402585693769551 Functional Gain - CD81 ENSG00000110651 UTR3 Human protein_coding chr11:2418101 chr11:2418102 . . 0 22 hm5C_associated_SNPs_129176 0 0 1 0 1 CD81 chr11:2418034 3'AG 2418034 Downstream 69bp
chr10 126205829 126205829 1 + C T rs61738754 126205828 + 126205808 126205848 41 GAGAGCGCTGCAGGTGCGCACCGGGAAGTTCAGGTCAGTGC GAGAGCGCTGCAGGTGCGCACTGGGAAGTTCAGGTCAGTGC < 41bp 0.613388926836203 0.814675937690618 0.8535015 0.78909063 prediction 0.402574021708831 Functional Gain - LHPP ENSG00000107902 CDS Human protein_coding chr10:126205828 chr10:126205829 synonymous SNV . 0 22 hm5C_associated_SNPs_129178 0 0 0 0 2 LHPP chr10:126205749 3'AG 126205749 Downstream 81bp
chr10 126205829 126205829 1 + C T rs61738754 126205828 + 126205808 126205848 41 GAGAGCGCTGCAGGTGCGCACCGGGAAGTTCAGGTCAGTGC GAGAGCGCTGCAGGTGCGCACTGGGAAGTTCAGGTCAGTGC < 41bp 0.613388926836203 0.814675937690618 0.8535015 0.78909063 prediction 0.402574021708831 Functional Gain - LHPP ENSG00000107902 CDS Human protein_coding chr10:126205828 chr10:126205829 synonymous SNV . 0 22 hm5C_associated_SNPs_129178 0 0 0 0 2 LHPP chr10:126205840 5'GT 126205840 Upstream 12bp
chrX 40440272 40440272 1 + C A rs377597654 40440271 + 40440251 40440291 41 CGGCTGTCGCCCGTGTCCCGCCGGCCCGTTCCGTGTCGCCC CGGCTGTCGCCCGTGTCCCGCAGGCCCGTTCCGTGTCGCCC < 41bp 0.603200490949665 0.8044874051511 0.8126503 0.8884505 prediction 0.402573828402871 Functional Gain - ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40440271 chrX:40440272 synonymous SNV . 0 22 hm5C_associated_SNPs_129179 1 0 1 0 1 ATP6AP2 chrX:40440354 5'GT 40440354 Upstream 83bp
chr12 98987856 98987856 1 + C G LUSC 98987852 + 98987832 98987872 41 CTCGGGGACCTCCGCAGCAGCTCCCCAGGGCCCACGGGCCA CTCGGGGACCTCCGCAGCAGCTCCGCAGGGCCCACGGGCCA < 41bp 0.685365425528911 0.886649130905932 0.0626311 0.11601928 prediction 0.402567410754042 Functional Gain - SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98987852 chr12:98987856 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_129181 0 0 1 0 2 SLC25A3 chr12:98987757 3'AG 98987757 Downstream 100bp
chr12 98987856 98987856 1 + C G LUSC 98987852 + 98987832 98987872 41 CTCGGGGACCTCCGCAGCAGCTCCCCAGGGCCCACGGGCCA CTCGGGGACCTCCGCAGCAGCTCCGCAGGGCCCACGGGCCA < 41bp 0.685365425528911 0.886649130905932 0.0626311 0.11601928 prediction 0.402567410754042 Functional Gain - SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98987852 chr12:98987856 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_129181 0 0 1 0 2 SLC25A3 chr12:98987913 5'GT 98987913 Upstream 58bp
chr11 118272388 118272388 1 + A G KIRP 118272385 + 118272365 118272405 41 TCTCCATTCCAGAACCATGGCCCAATTTGTCCGTAACCTTG TCTCCATTCCAGAACCATGGCCCGATTTGTCCGTAACCTTG < 41bp 0.592014942897384 0.793292381578939 0.089107275 0.1058225 prediction 0.40255487736311 Functional Gain - ATP5L ENSG00000167283 CDS Human protein_coding chr11:118272385 chr11:118272388 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_129185 0 0 1 0 1 ATP5L chr11:118272432 5'GT 118272432 Upstream 45bp
chr1 22925442 22925442 1 + C A LUAD 22925438 + 22925418 22925458 41 TATGTCCACCGAGACCTGGCCGCCCGCAACGTCCTGGTTGA TATGTCCACCGAGACCTGGCCGCCAGCAACGTCCTGGTTGA < 41bp 0.272744759360379 0.701271654710166 0.19771647 0.32658505 prediction 0.402543309420331 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22925438 chr1:22925442 nonsynonymous SNV 0.997 5 25 hm5C_associated_SNPs_129190 0 0 0 0 1 EPHA8 chr1:22925540 5'GT 22925540 Upstream 99bp
chr11 60978643 60978643 1 + C G rs576304258 60978640 + 60978620 60978660 41 ACCGGCACCTCTCTGCTGACCGGCCCAACCAGCCCCATTGC ACCGGCACCTCTCTGCTGACCGGGCCAACCAGCCCCATTGC < 41bp 0.567307596043811 0.768577585316325 0.20195472 0.91318285 prediction 0.402539978545029 Functional Gain - PGA3 ENSG00000229859 CDS Human protein_coding chr11:60978640 chr11:60978643 synonymous SNV . 0 24 hm5C_associated_SNPs_129191 0 0 0 0 2 PGA3 chr11:60978562 3'AG 60978562 Downstream 82bp
chr11 60978643 60978643 1 + C G rs576304258 60978640 + 60978620 60978660 41 ACCGGCACCTCTCTGCTGACCGGCCCAACCAGCCCCATTGC ACCGGCACCTCTCTGCTGACCGGGCCAACCAGCCCCATTGC < 41bp 0.567307596043811 0.768577585316325 0.20195472 0.91318285 prediction 0.402539978545029 Functional Gain - PGA3 ENSG00000229859 CDS Human protein_coding chr11:60978640 chr11:60978643 synonymous SNV . 0 24 hm5C_associated_SNPs_129191 0 0 0 0 2 PGA3 chr11:60978706 5'GT 60978706 Upstream 64bp
chr17 4510711 4510711 1 + C T STAD 4510710 + 4510690 4510730 41 GAGGACATGATGGTGATGGGCCGCAAGCCGGACCCCATGTG GAGGACATGATGGTGATGGGCTGCAAGCCGGACCCCATGTG < 41bp 0.62567462949285 0.826942596407032 0.36303288 0.3190527 prediction 0.402535933828364 Functional Gain - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4510710 chr17:4510711 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_129192 0 0 0 0 1 SMTNL2 chr17:4510656 3'AG 4510656 Downstream 56bp
chr7 30876373 30876373 1 + T C PAAD 30876370 + 30876350 30876390 41 ATCAAAACCAATTGACCTCTCAGTAGCAAAGGTAAGTGTAA ATCAAAACCAATTGACCTCTCAGCAGCAAAGGTAAGTGTAA < 41bp 0.485368724108506 0.701261362151126 0.07202181 0.19081321 prediction 0.402522724302252 Functional Gain - MINDY4 ENSG00000106125 CDS Human protein_coding chr7:30876370 chr7:30876373 nonsynonymous SNV 0.304 0 24 hm5C_associated_SNPs_129194 0 0 0 0 2 MINDY4 chr7:30876274 3'AG 30876274 Downstream 100bp
chr7 30876373 30876373 1 + T C PAAD 30876370 + 30876350 30876390 41 ATCAAAACCAATTGACCTCTCAGTAGCAAAGGTAAGTGTAA ATCAAAACCAATTGACCTCTCAGCAGCAAAGGTAAGTGTAA < 41bp 0.485368724108506 0.701261362151126 0.07202181 0.19081321 prediction 0.402522724302252 Functional Gain - MINDY4 ENSG00000106125 CDS Human protein_coding chr7:30876370 chr7:30876373 nonsynonymous SNV 0.304 0 24 hm5C_associated_SNPs_129194 0 0 0 0 2 MINDY4 chr7:30876380 5'GT 30876380 Upstream 8bp
chr6 123319235 123319235 1 + C G LUSC 123319234 + 123319214 123319254 41 CAGGCACTGAAGGATGGCTTCCCTGGGGGCCTGGCCAATCT CAGGCACTGAAGGATGGCTTCGCTGGGGGCCTGGCCAATCT < 41bp 0.366159274341594 0.701252884016654 0.09531015 0.24572286 prediction 0.402505768033308 Functional Gain - CLVS2 ENSG00000146352 CDS Human protein_coding chr6:123319234 chr6:123319235 nonsynonymous SNV 0.925 3 22 hm5C_associated_SNPs_129196 0 0 0 0 1 CLVS2 chr6:123319311 5'GT 123319311 Upstream 77bp
chr1 110586449 110586449 1 + C G MESO 110586448 + 110586428 110586468 41 GACTGACAGGCTGACTTGCCCCAAAGGGCTCCCGTGGGCTC GACTGACAGGCTGACTTGCCCGAAAGGGCTCCCGTGGGCTC < 41bp 0.700970917889333 0.902218313180758 0.03125772 0.13571721 prediction 0.40249479058285 Functional Gain - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110586448 chr1:110586449 synonymous SNV . 0 22 hm5C_associated_SNPs_129197 0 0 1 0 1 STRIP1 chr1:110586478 5'GT 110586478 Upstream 30bp
chr1 227171906 227171906 1 + C T UCEC 227171905 + 227171885 227171925 41 TGGCTTCCCCCTGGACCAGGCCGAAGGGCTCAGCCAGGAGA TGGCTTCCCCCTGGACCAGGCTGAAGGGCTCAGCCAGGAGA < 41bp 0.428515155924118 0.701245866390027 0.26018918 0.26886478 prediction 0.402491732780055 Functional Gain - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227171905 chr1:227171906 synonymous SNV . 0 22 hm5C_associated_SNPs_129198 0 0 1 0 1 COQ8A chr1:227171936 5'GT 227171936 Upstream 31bp
chr20 3721539 3721539 1 + C A UCEC 3721535 + 3721515 3721555 41 CAGGAAAGCTGCGGCATTGCCCCCCTCACACCCTCGCAGTC CAGGAAAGCTGCGGCATTGCCCCCATCACACCCTCGCAGTC < 41bp 0.272992089337196 0.701234929027968 0.09369433 0.11011666 prediction 0.402469858055936 Functional Gain - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3721535 chr20:3721539 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_129202 0 0 0 0 2 HSPA12B chr20:3721462 3'AG 3721462 Downstream 78bp
chr20 3721539 3721539 1 + C A UCEC 3721535 + 3721515 3721555 41 CAGGAAAGCTGCGGCATTGCCCCCCTCACACCCTCGCAGTC CAGGAAAGCTGCGGCATTGCCCCCATCACACCCTCGCAGTC < 41bp 0.272992089337196 0.701234929027968 0.09369433 0.11011666 prediction 0.402469858055936 Functional Gain - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3721535 chr20:3721539 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_129202 0 0 0 0 2 HSPA12B chr20:3721559 5'GT 3721559 Upstream 21bp
chr2 233321091 233321091 1 + C G BLCA 233321090 + 233321070 233321110 41 AACCCGGCCTTCTGGAACCGCCAGGCAGCTGAGGCCCTGGA AACCCGGCCTTCTGGAACCGCGAGGCAGCTGAGGCCCTGGA < 41bp 0.401631136044387 0.701234097203069 0.8329905 0.88842404 prediction 0.402468194406138 Functional Gain - ALPI ENSG00000163295 CDS Human protein_coding chr2:233321090 chr2:233321091 nonsynonymous SNV 0.033 0 22 hm5C_associated_SNPs_129205 0 0 0 0 2 ALPI chr2:233321059 3'AG 233321059 Downstream 33bp
chr2 233321091 233321091 1 + C G BLCA 233321090 + 233321070 233321110 41 AACCCGGCCTTCTGGAACCGCCAGGCAGCTGAGGCCCTGGA AACCCGGCCTTCTGGAACCGCGAGGCAGCTGAGGCCCTGGA < 41bp 0.401631136044387 0.701234097203069 0.8329905 0.88842404 prediction 0.402468194406138 Functional Gain - ALPI ENSG00000163295 CDS Human protein_coding chr2:233321090 chr2:233321091 nonsynonymous SNV 0.033 0 22 hm5C_associated_SNPs_129205 0 0 0 0 2 ALPI chr2:233321175 5'GT 233321175 Upstream 85bp
chr6 17292010 17292010 1 + C T BRCA 17292009 + 17291989 17292029 41 TACCTGCCCACTATGTCTATCCGCAGGCTTTTGTGCAGCCG TACCTGCCCACTATGTCTATCTGCAGGCTTTTGTGCAGCCG < 41bp 0.634303819615287 0.835534605745844 0.27365136 0.24901524 prediction 0.402461572261115 Functional Gain - RBM24 ENSG00000112183 CDS Human protein_coding chr6:17292009 chr6:17292010 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_129207 0 0 0 1 1 RBM24 chr6:17291987 3'AG 17291987 Downstream 24bp
chr14 97313616 97313616 1 + T C BLCA 97313614 + 97313594 97313634 41 TTCAGAAATGGATTCGTACCCGTAAGCTGAAGTACCTGGGT TTCAGAAATGGATTCGTACCCGCAAGCTGAAGTACCTGGGT < 41bp 0.672679586504146 0.873907196317778 0.47215548 0.39304233 prediction 0.402455219627263 Functional Gain - VRK1 ENSG00000100749 CDS Human protein_coding chr14:97313614 chr14:97313616 synonymous SNV . 0 23 hm5C_associated_SNPs_129211 0 0 1 0 2 VRK1 chr14:97313594 3'AG 97313594 Downstream 23bp
chr14 97313616 97313616 1 + T C BLCA 97313614 + 97313594 97313634 41 TTCAGAAATGGATTCGTACCCGTAAGCTGAAGTACCTGGGT TTCAGAAATGGATTCGTACCCGCAAGCTGAAGTACCTGGGT < 41bp 0.672679586504146 0.873907196317778 0.47215548 0.39304233 prediction 0.402455219627263 Functional Gain - VRK1 ENSG00000100749 CDS Human protein_coding chr14:97313614 chr14:97313616 synonymous SNV . 0 23 hm5C_associated_SNPs_129211 0 0 1 0 2 VRK1 chr14:97313681 5'GT 97313681 Upstream 66bp
chr14 77576242 77576242 1 + C T LUSC 77576241 + 77576221 77576261 41 GCTGGAGCAGAGAAGACAGGCCGAGGCAGAACTCCAAAACT GCTGGAGCAGAGAAGACAGGCTGAGGCAGAACTCCAAAACT < 41bp 0.620351495649744 0.821575781844073 0.30536944 0.430716 prediction 0.402448572388658 Functional Gain - CIPC ENSG00000198894 CDS Human protein_coding chr14:77576241 chr14:77576242 nonsynonymous SNV 0.942 0 22 hm5C_associated_SNPs_129213 0 0 0 0 2 CIPC chr14:77576155 3'AG 77576155 Downstream 88bp
chr14 77576242 77576242 1 + C T LUSC 77576241 + 77576221 77576261 41 GCTGGAGCAGAGAAGACAGGCCGAGGCAGAACTCCAAAACT GCTGGAGCAGAGAAGACAGGCTGAGGCAGAACTCCAAAACT < 41bp 0.620351495649744 0.821575781844073 0.30536944 0.430716 prediction 0.402448572388658 Functional Gain - CIPC ENSG00000198894 CDS Human protein_coding chr14:77576241 chr14:77576242 nonsynonymous SNV 0.942 0 22 hm5C_associated_SNPs_129213 0 0 0 0 2 CIPC chr14:77576324 5'GT 77576324 Upstream 83bp
chr5 76714121 76714121 1 + C T UCEC 76714120 + 76714100 76714140 41 CAGTCCATGACGTGGATCACCCGGGAAGGACCAACTCTTTC CAGTCCATGACGTGGATCACCTGGGAAGGACCAACTCTTTC < 41bp 0.623320707553139 0.824543793810924 0.40088993 0.7172025 prediction 0.40244617251557 Functional Gain - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76714120 chr5:76714121 nonsynonymous SNV 0.922 4 22 hm5C_associated_SNPs_129214 0 0 1 0 1 PDE8B chr5:76714054 3'AG 76714054 Downstream 68bp
chr9 91961941 91961941 1 + A G rs569594424 91961938 + 91961918 91961958 41 GCAGAGGGAGATCCCCAAGGCCAAGAAGCCAACCTCACTGA GCAGAGGGAGATCCCCAAGGCCAGGAAGCCAACCTCACTGA < 41bp 0.447056726547292 0.701220642085312 0.09826401 0.36624914 prediction 0.402441284170624 Functional Gain - SECISBP2 ENSG00000187742 CDS Human protein_coding chr9:91961938 chr9:91961941 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_129215 0 0 1 0 1 SECISBP2 chr9:91961963 5'GT 91961963 Upstream 23bp
chr6 39033979 39033979 1 + C A LUAD 39033975 + 39033955 39033995 41 GTCCCCCGTGTGCCACAGAGCTCCCCGGAGGAGCAGCTCCT GTCCCCCGTGTGCCACAGAGCTCCACGGAGGAGCAGCTCCT < 41bp 0.267965719425863 0.701210800261319 0.1023235 0.26235536 prediction 0.402421600522637 Functional Gain - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39033975 chr6:39033979 nonsynonymous SNV 0.140 0 25 hm5C_associated_SNPs_129217 0 0 0 2 1 GLP1R chr6:39033973 3'AG 39033973 Downstream 7bp
chr14 24649045 24649045 1 + C G OV 24649042 + 24649022 24649062 41 CTGCAGGCTAACAGGGAGCCCGACTTCAGCAGCCTGGTGTC CTGCAGGCTAACAGGGAGCCCGAGTTCAGCAGCCTGGTGTC < 41bp 0.53320297331903 0.734412701742835 0.27149653 0.67288727 prediction 0.40241945684761 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24649042 chr14:24649045 nonsynonymous SNV 0.817 0 24 hm5C_associated_SNPs_129220 0 0 0 0 2 REC8 chr14:24649006 3'AG 24649006 Downstream 40bp
chr14 24649045 24649045 1 + C G OV 24649042 + 24649022 24649062 41 CTGCAGGCTAACAGGGAGCCCGACTTCAGCAGCCTGGTGTC CTGCAGGCTAACAGGGAGCCCGAGTTCAGCAGCCTGGTGTC < 41bp 0.53320297331903 0.734412701742835 0.27149653 0.67288727 prediction 0.40241945684761 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24649042 chr14:24649045 nonsynonymous SNV 0.817 0 24 hm5C_associated_SNPs_129220 0 0 0 0 2 REC8 chr14:24649112 5'GT 24649112 Upstream 68bp
chr15 72956844 72956844 1 + C T STAD 72956843 + 72956823 72956863 41 AGCTAAGCCTCGTGGCTCTCCCGGGAGAAGGTACAGGAGAC AGCTAAGCCTCGTGGCTCTCCTGGGAGAAGGTACAGGAGAC < 41bp 0.606630790056728 0.80783575336284 0.8971125 0.88842434 prediction 0.402409926612223 Functional Gain - GOLGA6B ENSG00000215186 CDS Human protein_coding chr15:72956843 chr15:72956844 nonsynonymous SNV 0.109 3 22 hm5C_associated_SNPs_129221 0 0 0 0 2 GOLGA6B chr15:72956777 3'AG 72956777 Downstream 68bp
chr15 72956844 72956844 1 + C T STAD 72956843 + 72956823 72956863 41 AGCTAAGCCTCGTGGCTCTCCCGGGAGAAGGTACAGGAGAC AGCTAAGCCTCGTGGCTCTCCTGGGAGAAGGTACAGGAGAC < 41bp 0.606630790056728 0.80783575336284 0.8971125 0.88842434 prediction 0.402409926612223 Functional Gain - GOLGA6B ENSG00000215186 CDS Human protein_coding chr15:72956843 chr15:72956844 nonsynonymous SNV 0.109 3 22 hm5C_associated_SNPs_129221 0 0 0 0 2 GOLGA6B chr15:72956852 5'GT 72956852 Upstream 9bp
chr15 45564510 45564510 1 + C T COAD 45564509 + 45564489 45564529 41 GCAGCATCAATAGTACCTCACCGGAAGAGTGACTTGTCCAA GCAGCATCAATAGTACCTCACTGGAAGAGTGACTTGTCCAA < 41bp 0.614996944772049 0.81620149657382 0.15350083 0.1692324 prediction 0.402409103603541 Functional Gain - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45564509 chr15:45564510 nonsynonymous SNV 0.184 4 22 hm5C_associated_SNPs_129222 0 0 0 0 2 SLC28A2 chr15:45564493 3'AG 45564493 Downstream 18bp
chr15 45564510 45564510 1 + C T COAD 45564509 + 45564489 45564529 41 GCAGCATCAATAGTACCTCACCGGAAGAGTGACTTGTCCAA GCAGCATCAATAGTACCTCACTGGAAGAGTGACTTGTCCAA < 41bp 0.614996944772049 0.81620149657382 0.15350083 0.1692324 prediction 0.402409103603541 Functional Gain - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45564509 chr15:45564510 nonsynonymous SNV 0.184 4 22 hm5C_associated_SNPs_129222 0 0 0 0 2 SLC28A2 chr15:45564591 5'GT 45564591 Upstream 82bp
chr17 16330833 16330833 1 + T G BRCA 16330829 + 16330809 16330849 41 TGACGGGCCACATCCTTATCCTGCTAGGGGGGATCTACCTC TGACGGGCCACATCCTTATCCTGCGAGGGGGGATCTACCTC < 41bp 0.549032332664055 0.750228661668027 0.22839868 0.8462504 prediction 0.402392658007943 Functional Gain - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16330829 chr17:16330833 nonsynonymous SNV 0.724 3 25 hm5C_associated_SNPs_129224 0 0 0 0 3 TRPV2 chr17:16330763 3'AG 16330763 Downstream 71bp
chr17 16330833 16330833 1 + T G BRCA 16330829 + 16330809 16330849 41 TGACGGGCCACATCCTTATCCTGCTAGGGGGGATCTACCTC TGACGGGCCACATCCTTATCCTGCGAGGGGGGATCTACCTC < 41bp 0.549032332664055 0.750228661668027 0.22839868 0.8462504 prediction 0.402392658007943 Functional Gain - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16330829 chr17:16330833 nonsynonymous SNV 0.724 3 25 hm5C_associated_SNPs_129224 0 0 0 0 3 TRPV2 chr17:16330766 3'AG 16330766 Downstream 68bp
chr17 16330833 16330833 1 + T G BRCA 16330829 + 16330809 16330849 41 TGACGGGCCACATCCTTATCCTGCTAGGGGGGATCTACCTC TGACGGGCCACATCCTTATCCTGCGAGGGGGGATCTACCTC < 41bp 0.549032332664055 0.750228661668027 0.22839868 0.8462504 prediction 0.402392658007943 Functional Gain - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16330829 chr17:16330833 nonsynonymous SNV 0.724 3 25 hm5C_associated_SNPs_129224 0 0 0 0 3 TRPV2 chr17:16330861 5'GT 16330861 Upstream 29bp
chr19 49502595 49502595 1 + C T UCEC 49502594 + 49502574 49502614 41 AGACAGCCACAACCAAAGTCCCGGAGATCCGTGATGTAACA AGACAGCCACAACCAAAGTCCTGGAGATCCGTGATGTAACA < 41bp 0.454994038378336 0.701190894557017 0.24258468 0.084783524 prediction 0.402381789114035 Functional Gain - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49502594 chr19:49502595 nonsynonymous SNV 0.989 0 22 hm5C_associated_SNPs_129225 0 0 1 0 2 RUVBL2 chr19:49502576 3'AG 49502576 Downstream 20bp
chr19 49502595 49502595 1 + C T UCEC 49502594 + 49502574 49502614 41 AGACAGCCACAACCAAAGTCCCGGAGATCCGTGATGTAACA AGACAGCCACAACCAAAGTCCTGGAGATCCGTGATGTAACA < 41bp 0.454994038378336 0.701190894557017 0.24258468 0.084783524 prediction 0.402381789114035 Functional Gain - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49502594 chr19:49502595 nonsynonymous SNV 0.989 0 22 hm5C_associated_SNPs_129225 0 0 1 0 2 RUVBL2 chr19:49502630 5'GT 49502630 Upstream 36bp
chr6 167708079 167708079 1 + C T UCEC 167708078 + 167708058 167708098 41 TGGAGGCATGCTCCTGTCCTCCATGTTCCTCCCACCGCTCC TGGAGGCATGCTCCTGTCCTCTATGTTCCTCCCACCGCTCC < 41bp 0.44996851561783 0.701190744783521 0.042575896 0.070344776 prediction 0.402381489567041 Functional Gain - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167708078 chr6:167708079 synonymous SNV . 0 22 hm5C_associated_SNPs_129226 0 0 0 0 1 UNC93A chr6:167708005 3'AG 167708005 Downstream 75bp
chr19 2811683 2811683 1 + T C COAD 2811681 + 2811661 2811701 41 CTGTGGAGCGAGGTGTATTCCATGGACATGTTCCACACGCG CTGTGGAGCGAGGTGTATTCCACGGACATGTTCCACACGCG < 41bp 0.661379852196622 0.862566640810216 0.500615 0.41108006 prediction 0.402373577227189 Functional Gain - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2811681 chr19:2811683 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_129228 0 0 1 0 2 THOP1 chr19:2811596 3'AG 2811596 Downstream 88bp
chr19 2811683 2811683 1 + T C COAD 2811681 + 2811661 2811701 41 CTGTGGAGCGAGGTGTATTCCATGGACATGTTCCACACGCG CTGTGGAGCGAGGTGTATTCCACGGACATGTTCCACACGCG < 41bp 0.661379852196622 0.862566640810216 0.500615 0.41108006 prediction 0.402373577227189 Functional Gain - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2811681 chr19:2811683 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_129228 0 0 1 0 2 THOP1 chr19:2811732 5'GT 2811732 Upstream 50bp
chr9 100056305 100056305 1 + C A UCEC 100056301 + 100056281 100056321 41 GGCCTGGGTGCCTGCCTTTCCAGGCTGCTCATCAGTTGCCT GGCCTGGGTGCCTGCCTTTCCAGGATGCTCATCAGTTGCCT < 41bp 0.740277112139133 0.941458672579874 0.9003946 0.8792765 prediction 0.402363120881483 Functional Gain - LOC100499484;LOC100499484-C9ORF174 ENSG00000197816 CDS Human other chr9:100056301 chr9:100056305 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_129229 0 0 0 0 2 LOC100499484;LOC100499484-C9ORF174 chr9:100056229 3'AG 100056229 Downstream 77bp
chr9 100056305 100056305 1 + C A UCEC 100056301 + 100056281 100056321 41 GGCCTGGGTGCCTGCCTTTCCAGGCTGCTCATCAGTTGCCT GGCCTGGGTGCCTGCCTTTCCAGGATGCTCATCAGTTGCCT < 41bp 0.740277112139133 0.941458672579874 0.9003946 0.8792765 prediction 0.402363120881483 Functional Gain - LOC100499484;LOC100499484-C9ORF174 ENSG00000197816 CDS Human other chr9:100056301 chr9:100056305 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_129229 0 0 0 0 2 LOC100499484;LOC100499484-C9ORF174 chr9:100056392 5'GT 100056392 Upstream 88bp
chr16 68380086 68380086 1 + T G UCEC 68380083 + 68380063 68380103 41 GAGAGTCCGCCAGATGCGCCCCGTGTGTGACTGCCAGGCTC GAGAGTCCGCCAGATGCGCCCCGGGTGTGACTGCCAGGCTC < 41bp 0.289680791077123 0.701181167046956 0.118566275 0.89324975 prediction 0.402362334093911 Functional Gain - PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68380083 chr16:68380086 nonsynonymous SNV 0.932 3 24 hm5C_associated_SNPs_129230 0 0 1 0 2 PRMT7 chr16:68380048 3'AG 68380048 Downstream 39bp
chr16 68380086 68380086 1 + T G UCEC 68380083 + 68380063 68380103 41 GAGAGTCCGCCAGATGCGCCCCGTGTGTGACTGCCAGGCTC GAGAGTCCGCCAGATGCGCCCCGGGTGTGACTGCCAGGCTC < 41bp 0.289680791077123 0.701181167046956 0.118566275 0.89324975 prediction 0.402362334093911 Functional Gain - PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68380083 chr16:68380086 nonsynonymous SNV 0.932 3 24 hm5C_associated_SNPs_129230 0 0 1 0 2 PRMT7 chr16:68380183 5'GT 68380183 Upstream 98bp
chr1 55521731 55521731 1 + C T LUSC 55521730 + 55521710 55521750 41 CCACTGGTGGTGCTGCTGCCCCTGGCGGGTGGGTACAGCCG CCACTGGTGGTGCTGCTGCCCTTGGCGGGTGGGTACAGCCG < 41bp 0.454051938991416 0.701180733531797 0.18604657 0.07153255 prediction 0.402361467063594 Functional Gain - PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55521730 chr1:55521731 synonymous SNV . 0 22 hm5C_associated_SNPs_129231 0 0 1 0 1 PCSK9 chr1:55521666 3'AG 55521666 Downstream 66bp
chr17 26851891 26851891 1 + T G SKCM 26851889 + 26851869 26851909 41 TTCGAGGAGATCCCAGTGGACGTGGCGGAGGCCGAGGCCTT TTCGAGGAGATCCCAGTGGACGGGGCGGAGGCCGAGGCCTT < 41bp 0.726439304668845 0.927617712667118 0.8572289 0.9125482 prediction 0.402356815996546 Functional Gain - FOXN1 ENSG00000109101 CDS Human protein_coding chr17:26851889 chr17:26851891 nonsynonymous SNV 0.069 2 23 hm5C_associated_SNPs_129234 0 0 0 0 1 FOXN1 chr17:26851985 5'GT 26851985 Upstream 95bp
chr6 79944327 79944327 1 - G C BRCA 79944328 - 79944308 79944348 41 GGCAGCATCCAGCGGCGGCGCCAGCAGTTCCAGTCCGTTGC GGCAGCATCCAGCGGCGGCGCGAGCAGTTCCAGTCCGTTGC < 41bp 0.450363861312029 0.701177835151899 0.31070232 0.36120772 prediction 0.402355670303798 Functional Gain - HMGN3-AS1 ENSG00000270362 ncRNA_exonic Human protein_coding chr6:79944328 chr6:79944327 . . 0 22 hm5C_associated_SNPs_129235 0 0 1 0 1 HMGN3 chr6:79944263 5'GT 79944263 Upstream 65bp
chr3 52548816 52548816 1 + T C STAD 52548813 + 52548793 52548833 41 TCCTGACGGTGGGCTCAAGTCGCTGCCTGCATAGCCACGCT TCCTGACGGTGGGCTCAAGTCGCCGCCTGCATAGCCACGCT < 41bp 0.507701036248306 0.708876140719207 0.5179796 0.6465487 prediction 0.402350208941802 Functional Gain - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52548813 chr3:52548816 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_129236 0 0 0 0 2 STAB1 chr3:52548717 3'AG 52548717 Downstream 100bp
chr3 52548816 52548816 1 + T C STAD 52548813 + 52548793 52548833 41 TCCTGACGGTGGGCTCAAGTCGCTGCCTGCATAGCCACGCT TCCTGACGGTGGGCTCAAGTCGCCGCCTGCATAGCCACGCT < 41bp 0.507701036248306 0.708876140719207 0.5179796 0.6465487 prediction 0.402350208941802 Functional Gain - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52548813 chr3:52548816 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_129236 0 0 0 0 2 STAB1 chr3:52548845 5'GT 52548845 Upstream 30bp
chr10 114169396 114169396 1 + A G LIHC 114169393 + 114169373 114169413 41 CCTTTGATGATGACCTGAAGCAAAGAGGGGAGAAGAGTGGA CCTTTGATGATGACCTGAAGCAAGGAGGGGAGAAGAGTGGA < 41bp 0.458292456084345 0.701171652974035 0.30544657 0.34982133 prediction 0.402343305948071 Functional Gain - ACSL5 ENSG00000197142 CDS Human protein_coding chr10:114169393 chr10:114169396 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_129239 0 0 1 0 1 ACSL5 chr10:114169443 5'GT 114169443 Upstream 48bp
chr12 52464142 52464142 1 + T A rs558671796 52464138 + 52464118 52464158 41 TTTTCTGGTTTTGCTTTTAGCTGGTCTCTTGTGGCTCAGCG TTTTCTGGTTTTGCTTTTAGCTGGACTCTTGTGGCTCAGCG < 41bp 0.6112894533679 0.812458853923565 0.41187987 0.44841453 prediction 0.402338801111331 Functional Gain - ATG101 ENSG00000123395 UTR5 Human protein_coding chr12:52464138 chr12:52464142 . . 0 25 hm5C_associated_SNPs_129240 0 0 1 0 1 ATG101 chr12:52464138 3'AG 52464138 Downstream 5bp
chr2 207509349 207509349 1 + C G LUSC 207509345 + 207509325 207509365 41 AAGAGAAAATCTCAGCAGCGCAGCCACAGCACACAAGGAGT AAGAGAAAATCTCAGCAGCGCAGCGACAGCACACAAGGAGT < 41bp 0.413790941947956 0.701168667470737 0.64870596 0.70002496 prediction 0.402337334941475 Functional Gain - FAM237A ENSG00000235118 ncRNA_exonic Human protein_coding chr2:207509345 chr2:207509349 . . 0 25 hm5C_associated_SNPs_129241 0 0 0 0 1 FAM237A chr2:207509372 5'GT 207509372 Upstream 24bp
chr3 128615338 128615338 1 + C T rs111716284 128615337 + 128615317 128615357 41 ATACTTGCCTAAACTGGCGTCCGGGGAGCACATTGCAGCCT ATACTTGCCTAAACTGGCGTCTGGGGAGCACATTGCAGCCT < 41bp 0.62801036123596 0.82917518294743 0.91165215 0.8916624 prediction 0.40232964342294 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128615337 chr3:128615338 synonymous SNV . 0 22 hm5C_associated_SNPs_129244 0 0 1 0 2 ACAD9 chr3:128615279 3'AG 128615279 Downstream 60bp
chr3 128615338 128615338 1 + C T rs111716284 128615337 + 128615317 128615357 41 ATACTTGCCTAAACTGGCGTCCGGGGAGCACATTGCAGCCT ATACTTGCCTAAACTGGCGTCTGGGGAGCACATTGCAGCCT < 41bp 0.62801036123596 0.82917518294743 0.91165215 0.8916624 prediction 0.40232964342294 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128615337 chr3:128615338 synonymous SNV . 0 22 hm5C_associated_SNPs_129244 0 0 1 0 2 ACAD9 chr3:128615379 5'GT 128615379 Upstream 42bp
chr19 41707228 41707228 1 + C T SKCM 41707227 + 41707207 41707247 41 TGGGACGATGACGGTCAGCACCACGGTCGGCTATACCCTCC TGGGACGATGACGGTCAGCACTACGGTCGGCTATACCCTCC < 41bp 0.440323700530065 0.701162766904987 0.24749565 0.2564282 prediction 0.402325533809974 Functional Gain - CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41707227 chr19:41707228 nonsynonymous SNV 0.087 0 22 hm5C_associated_SNPs_129245 0 0 0 0 2 CYP2S1 chr19:41707136 3'AG 41707136 Downstream 93bp
chr19 41707228 41707228 1 + C T SKCM 41707227 + 41707207 41707247 41 TGGGACGATGACGGTCAGCACCACGGTCGGCTATACCCTCC TGGGACGATGACGGTCAGCACTACGGTCGGCTATACCCTCC < 41bp 0.440323700530065 0.701162766904987 0.24749565 0.2564282 prediction 0.402325533809974 Functional Gain - CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41707227 chr19:41707228 nonsynonymous SNV 0.087 0 22 hm5C_associated_SNPs_129245 0 0 0 0 2 CYP2S1 chr19:41707277 5'GT 41707277 Upstream 50bp
chr17 73102073 73102073 1 + C T COAD 73102072 + 73102052 73102092 41 GCCATGAGTGGCTCTTATGGCCAAAGGCGGTACTGCAGGCC GCCATGAGTGGCTCTTATGGCTAAAGGCGGTACTGCAGGCC < 41bp 0.457823099586957 0.7011623292036 0.9155425 0.7708535 prediction 0.4023246584072 Functional Gain - SLC16A5 ENSG00000170190 CDS Human protein_coding chr17:73102072 chr17:73102073 nonsynonymous SNV 0.004 2 22 hm5C_associated_SNPs_129246 0 0 1 0 1 SLC16A5 chr17:73101975 3'AG 73101975 Downstream 99bp
chr17 46972581 46972581 1 + C T GBM 46972580 + 46972560 46972600 41 TTCCAGACCAGTGTTGTCTCCCGGGACATTGACACAGCAGC TTCCAGACCAGTGTTGTCTCCTGGGACATTGACACAGCAGC < 41bp 0.634291776173677 0.835450137077255 0.8489721 0.443347 prediction 0.402316721807157 Functional Gain - ATP5G1 ENSG00000159199 CDS Human protein_coding chr17:46972580 chr17:46972581 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_129248 0 0 1 0 1 ATP5G1 chr17:46972518 3'AG 46972518 Downstream 64bp
chr2 169717417 169717417 1 + C T rs61730433 169717416 + 169717396 169717436 41 GCAATCCAGGTTCTTCAACTCCAGGTAATCCCATGCCCACA GCAATCCAGGTTCTTCAACTCTAGGTAATCCCATGCCCACA < 41bp 0.599051629776613 0.800208039075414 0.791993 0.22411984 prediction 0.402312818597602 Functional Gain - NOSTRIN ENSG00000163072 CDS Human protein_coding chr2:169717416 chr2:169717417 nonsynonymous SNV 0.321 0 22 hm5C_associated_SNPs_129249 0 0 0 0 1 NOSTRIN chr2:169717419 5'GT 169717419 Upstream 3bp
chrX 134987501 134987501 1 + T G COAD 134987497 + 134987477 134987517 41 TCTTGTCAACTGCTCCACCACAGCTTGTTCATATGGCTGCA TCTTGTCAACTGCTCCACCACAGCGTGTTCATATGGCTGCA < 41bp 0.558499934375531 0.759654921386784 0.03408745 0.04974425 prediction 0.402309974022505 Functional Gain - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134987497 chrX:134987501 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_129252 0 0 1 0 2 SAGE1 chrX:134987411 3'AG 134987411 Downstream 91bp
chrX 134987501 134987501 1 + T G COAD 134987497 + 134987477 134987517 41 TCTTGTCAACTGCTCCACCACAGCTTGTTCATATGGCTGCA TCTTGTCAACTGCTCCACCACAGCGTGTTCATATGGCTGCA < 41bp 0.558499934375531 0.759654921386784 0.03408745 0.04974425 prediction 0.402309974022505 Functional Gain - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134987497 chrX:134987501 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_129252 0 0 1 0 2 SAGE1 chrX:134987551 5'GT 134987551 Upstream 51bp
chr16 84486821 84486821 1 + C G rs267604667 84486817 + 84486797 84486837 41 GTGGACAGCGTGGAGAAGGGCGAGCTGGCCGACCGCGTGGG GTGGACAGCGTGGAGAAGGGCGAGGTGGCCGACCGCGTGGG < 41bp 0.685730791885675 0.88688013227263 0.5874841 0.82694066 prediction 0.402298680773911 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84486817 chr16:84486821 nonsynonymous SNV 0.009 5 25 hm5C_associated_SNPs_129253 0 0 0 0 2 ATP2C2 chr16:84486744 3'AG 84486744 Downstream 78bp
chr16 84486821 84486821 1 + C G rs267604667 84486817 + 84486797 84486837 41 GTGGACAGCGTGGAGAAGGGCGAGCTGGCCGACCGCGTGGG GTGGACAGCGTGGAGAAGGGCGAGGTGGCCGACCGCGTGGG < 41bp 0.685730791885675 0.88688013227263 0.5874841 0.82694066 prediction 0.402298680773911 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84486817 chr16:84486821 nonsynonymous SNV 0.009 5 25 hm5C_associated_SNPs_129253 0 0 0 0 2 ATP2C2 chr16:84486841 5'GT 84486841 Upstream 21bp
chr16 28898793 28898793 1 + T C rs6565259 28898790 + 28898770 28898810 41 GCCTTGGGCATCGTGGCCACCACTGGTGTGGGCACCGAGAT GCCTTGGGCATCGTGGCCACCACCGGTGTGGGCACCGAGAT < 41bp 0.569660531009666 0.770797002891906 0.19892842 0.2660172 prediction 0.40227294376448 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28898790 chr16:28898793 synonymous SNV . 0 24 hm5C_associated_SNPs_129256 2 0 1 0 1 ATP2A1 chr16:28898746 3'AG 28898746 Downstream 48bp
chr1 15479182 15479182 1 + T G rs193036293 15479178 + 15479158 15479198 41 TTCCCTCTGTGTTTAGCATCCACGTTTTTTGGCGGTCTGGC TTCCCTCTGTGTTTAGCATCCACGGTTTTTGGCGGTCTGGC < 41bp 0.509006880223004 0.710142388772727 0.25948042 0.16733497 prediction 0.402271017099446 Functional Gain - TMEM51 ENSG00000171729 UTR5 Human protein_coding chr1:15479178 chr1:15479182 . . 0 25 hm5C_associated_SNPs_129257 0 0 1 0 1 TMEM51 chr1:15479280 5'GT 15479280 Upstream 99bp
chr22 38212609 38212609 1 + C T SKCM 38212608 + 38212588 38212628 41 GGGTTCAGCTACCCCGTGGTCCCCAAGGGCAAGGCCCGGAT GGGTTCAGCTACCCCGTGGTCTCCAAGGGCAAGGCCCGGAT < 41bp 0.669966676737821 0.871100277588964 0.33448642 0.9557953 prediction 0.402267201702287 Functional Gain - GCAT ENSG00000100116 CDS Human protein_coding chr22:38212608 chr22:38212609 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_129258 0 0 0 0 1 GCAT chr22:38212574 3'AG 38212574 Downstream 36bp
chr2 173354378 173354378 1 + A G KIRC 173354375 + 173354355 173354395 41 CACAAAAGGAGATAAACTCCCTGAACCTAACGGTATGTCGG CACAAAAGGAGATAAACTCCCTGGACCTAACGGTATGTCGG < 41bp 0.468234547038223 0.701131752482566 0.0743373 0.2093383 prediction 0.402263504965132 Functional Gain - ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173354375 chr2:173354378 nonsynonymous SNV 0.013 0 24 hm5C_associated_SNPs_129259 0 0 1 0 1 ITGA6 chr2:173354386 5'GT 173354386 Upstream 9bp
chr15 101514110 101514110 1 + C T rs528714330 101514109 + 101514089 101514129 41 GCCGCGTACAGGCGGGGAGACCGCGGCGGCGCCCGGGACCT GCCGCGTACAGGCGGGGAGACTGCGGCGGCGCCCGGGACCT < 41bp 0.5976573595482 0.798788943103685 0.8896132 0.9056564 prediction 0.402263167110971 Functional Gain - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101514109 chr15:101514110 nonsynonymous SNV 0.014 1 22 hm5C_associated_SNPs_129260 0 0 0 0 1 LRRK1 chr15:101514172 5'GT 101514172 Upstream 63bp
chr3 52512495 52512495 1 + C T SKCM 52512494 + 52512474 52512514 41 GTCCGGAGCATAGGCAGCCTCCCGTGTCTGGAGCACGTGTC GTCCGGAGCATAGGCAGCCTCTCGTGTCTGGAGCACGTGTC < 41bp 0.429096792027643 0.701128679572616 0.35367483 0.43095082 prediction 0.402257359145233 Functional Gain - NISCH ENSG00000010322 CDS Human protein_coding chr3:52512494 chr3:52512495 nonsynonymous SNV 0.961 3 22 hm5C_associated_SNPs_129263 0 0 1 0 2 NISCH chr3:52512465 3'AG 52512465 Downstream 31bp
chr3 52512495 52512495 1 + C T SKCM 52512494 + 52512474 52512514 41 GTCCGGAGCATAGGCAGCCTCCCGTGTCTGGAGCACGTGTC GTCCGGAGCATAGGCAGCCTCTCGTGTCTGGAGCACGTGTC < 41bp 0.429096792027643 0.701128679572616 0.35367483 0.43095082 prediction 0.402257359145233 Functional Gain - NISCH ENSG00000010322 CDS Human protein_coding chr3:52512494 chr3:52512495 nonsynonymous SNV 0.961 3 22 hm5C_associated_SNPs_129263 0 0 1 0 2 NISCH chr3:52512593 5'GT 52512593 Upstream 99bp
chr16 2510640 2510640 1 + C T LUSC 2510639 + 2510619 2510659 41 TGCAGGGAACCAACTGGGACCCGGGCTTTGAAGCCACCTCC TGCAGGGAACCAACTGGGACCTGGGCTTTGAAGCCACCTCC < 41bp 0.502363776783627 0.703490667600997 0.9063138 0.8438586 prediction 0.402253781634739 Functional Gain - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2510639 chr16:2510640 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_129265 0 0 1 0 2 C16orf59 chr16:2510624 3'AG 2510624 Downstream 17bp
chr16 2510640 2510640 1 + C T LUSC 2510639 + 2510619 2510659 41 TGCAGGGAACCAACTGGGACCCGGGCTTTGAAGCCACCTCC TGCAGGGAACCAACTGGGACCTGGGCTTTGAAGCCACCTCC < 41bp 0.502363776783627 0.703490667600997 0.9063138 0.8438586 prediction 0.402253781634739 Functional Gain - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2510639 chr16:2510640 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_129265 0 0 1 0 2 C16orf59 chr16:2510694 5'GT 2510694 Upstream 55bp
chr12 113328772 113328772 1 + T A BLCA 113328770 + 113328750 113328790 41 CGCTGCGTGCACCTGGCTGCCATGGACGCTAATGGCTACTC CGCTGCGTGCACCTGGCTGCCAAGGACGCTAATGGCTACTC < 41bp 0.498675007253353 0.701120948615508 0.3612557 0.8060704 prediction 0.402241897231015 Functional Gain - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113328770 chr12:113328772 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_129268 0 0 0 0 1 RPH3A chr12:113328808 5'GT 113328808 Upstream 37bp
chr1 46906793 46906793 1 + T A rs3795315 46906789 + 46906769 46906809 41 TATGAGCAAGAGTTCATAGCCAAGTGGAGGTCCCTGGACCT TATGAGCAAGAGTTCATAGCCAAGAGGAGGTCCCTGGACCT < 41bp 0.663123527418935 0.864234576322332 0.8548585 0.691727 prediction 0.402222097806794 Functional Gain - FAAHP1 ENSG00000232022 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:46906789 chr1:46906793 . . 0 25 hm5C_associated_SNPs_129273 0 0 0 0 2 FAAHP1 chr1:46906766 3'AG 46906766 Downstream 28bp
chr1 46906793 46906793 1 + T A rs3795315 46906789 + 46906769 46906809 41 TATGAGCAAGAGTTCATAGCCAAGTGGAGGTCCCTGGACCT TATGAGCAAGAGTTCATAGCCAAGAGGAGGTCCCTGGACCT < 41bp 0.663123527418935 0.864234576322332 0.8548585 0.691727 prediction 0.402222097806794 Functional Gain - FAAHP1 ENSG00000232022 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:46906789 chr1:46906793 . . 0 25 hm5C_associated_SNPs_129273 0 0 0 0 2 FAAHP1 chr1:46906874 5'GT 46906874 Upstream 82bp
chr19 50031886 50031886 1 + C T SKCM 50031885 + 50031865 50031905 41 GATGACGCCCACGGGAACTTCCAGTACGACCATGAGGCTTT GATGACGCCCACGGGAACTTCTAGTACGACCATGAGGCTTT < 41bp 0.446013210281431 0.701106317284721 0.09952369 0.23881063 prediction 0.402212634569442 Functional Gain - RCN3 ENSG00000142552 CDS Human protein_coding chr19:50031885 chr19:50031886 stopgain 1.000 1 22 hm5C_associated_SNPs_129275 0 0 0 0 1 RCN3 chr19:50031971 5'GT 50031971 Upstream 86bp
chr12 112572675 112572675 1 + C A LUSC 112572671 + 112572651 112572691 41 ACTCACATGGCTGCAGAACACTGTCAGGTGAGCCACCAAGT ACTCACATGGCTGCAGAACACTGTAAGGTGAGCCACCAAGT < 41bp 0.271836204575667 0.701097288257966 0.04989168 0.22975335 prediction 0.402194576515932 Functional Gain - TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112572671 chr12:112572675 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_129279 0 0 1 0 1 TRAFD1 chr12:112572677 5'GT 112572677 Upstream 3bp
chr19 57742431 57742431 1 + C G rs555913559 57742428 + 57742408 57742448 41 TATAAAAGAAGGCCGCGCAGCCACGGCTGCTCACGACGCCG TATAAAAGAAGGCCGCGCAGCCAGGGCTGCTCACGACGCCG < 41bp 0.530149589414701 0.731228976677222 0.073679894 0.40059996 prediction 0.402158774525042 Functional Gain - AURKC ENSG00000105146 UTR5 Human protein_coding chr19:57742428 chr19:57742431 . . 0 24 hm5C_associated_SNPs_129284 0 0 0 0 1 AURKC chr19:57742482 5'GT 57742482 Upstream 52bp
chr6 31691666 31691666 1 + C A rs4947252 31691662 + 31691642 31691682 41 CCTCTTGAGCGCGGGGGACTCGGGCACTTTTTTCTGCAAGG CCTCTTGAGCGCGGGGGACTCGGGAACTTTTTTCTGCAAGG < 41bp 0.696921256705134 0.897992982892286 0.90545475 0.9096605 prediction 0.402143452374304 Functional Gain - MPIG6B ENSG00000204420 CDS Human protein_coding chr6:31691662 chr6:31691666 synonymous SNV . 0 25 hm5C_associated_SNPs_129287 0 0 0 0 1 MPIG6B chr6:31691763 5'GT 31691763 Upstream 98bp
chr4 169086441 169086441 1 + A G rs4405979 169086438 + 169086418 169086458 41 GAGGACATTTATTCAGAGACCTCAGGACACTTCAGAGATAC GAGGACATTTATTCAGAGACCTCGGGACACTTCAGAGATAC < 41bp 0.573168528175544 0.774237308083376 0.2867871 0.2869747 prediction 0.402137559815665 Functional Gain - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169086438 chr4:169086441 synonymous SNV . 0 24 hm5C_associated_SNPs_129291 0 0 0 0 2 ANXA10 chr4:169086398 3'AG 169086398 Downstream 44bp
chr4 169086441 169086441 1 + A G rs4405979 169086438 + 169086418 169086458 41 GAGGACATTTATTCAGAGACCTCAGGACACTTCAGAGATAC GAGGACATTTATTCAGAGACCTCGGGACACTTCAGAGATAC < 41bp 0.573168528175544 0.774237308083376 0.2867871 0.2869747 prediction 0.402137559815665 Functional Gain - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169086438 chr4:169086441 synonymous SNV . 0 24 hm5C_associated_SNPs_129291 0 0 0 0 2 ANXA10 chr4:169086477 5'GT 169086477 Upstream 37bp
chr22 24953681 24953681 1 + C T UCEC 24953680 + 24953660 24953700 41 GATTAAAGTACTGCATGAGGCCGAGGGCCACATTGTGACAT GATTAAAGTACTGCATGAGGCTGAGGGCCACATTGTGACAT < 41bp 0.603234516166941 0.804299312757873 0.13965577 0.10926339 prediction 0.402129593181863 Functional Gain - SNRPD3 ENSG00000100028 CDS Human protein_coding chr22:24953680 chr22:24953681 synonymous SNV . 0 22 hm5C_associated_SNPs_129292 0 0 1 0 2 SNRPD3 chr22:24953625 3'AG 24953625 Downstream 57bp
chr22 24953681 24953681 1 + C T UCEC 24953680 + 24953660 24953700 41 GATTAAAGTACTGCATGAGGCCGAGGGCCACATTGTGACAT GATTAAAGTACTGCATGAGGCTGAGGGCCACATTGTGACAT < 41bp 0.603234516166941 0.804299312757873 0.13965577 0.10926339 prediction 0.402129593181863 Functional Gain - SNRPD3 ENSG00000100028 CDS Human protein_coding chr22:24953680 chr22:24953681 synonymous SNV . 0 22 hm5C_associated_SNPs_129292 0 0 1 0 2 SNRPD3 chr22:24953768 5'GT 24953768 Upstream 88bp
chr2 73476280 73476280 1 + T C COAD 73476278 + 73476258 73476298 41 TGTTCTGTGCTGGCCGAGTACCTGAGGAGGATCTGAAGAGG TGTTCTGTGCTGGCCGAGTACCCGAGGAGGATCTGAAGAGG < 41bp 0.682607541207042 0.883667796990101 0.5490822 0.5798712 prediction 0.402120511566119 Functional Gain - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73476278 chr2:73476280 synonymous SNV . 0 23 hm5C_associated_SNPs_129295 0 0 1 0 1 CCT7 chr2:73476307 5'GT 73476307 Upstream 28bp
chr1 207010066 207010066 1 + T C HNSC 207010063 + 207010043 207010083 41 TACAATACTGATATTGTGCTCAGTAGACAACCACGGTCTCA TACAATACTGATATTGTGCTCAGCAGACAACCACGGTCTCA < 41bp 0.547963397675977 0.749022067038105 0.6518789 0.85243803 prediction 0.402117338724256 Functional Gain - IL19 ENSG00000142224 CDS Human protein_coding chr1:207010063 chr1:207010066 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_129296 0 0 0 0 1 IL19 chr1:207010151 5'GT 207010151 Upstream 86bp
chr16 90024045 90024045 1 + C T UCEC 90024044 + 90024024 90024064 41 GTGGTGCGACTCATCCACCTCCGGCTGAAGCTCCAGGAGCT GTGGTGCGACTCATCCACCTCTGGCTGAAGCTCCAGGAGCT < 41bp 0.457582964396466 0.70105600877405 0.82631063 0.56278175 prediction 0.402112017548101 Functional Gain - DEF8 ENSG00000140995 CDS Human protein_coding chr16:90024044 chr16:90024045 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_129300 0 0 1 0 2 DEF8 chr16:90023949 3'AG 90023949 Downstream 97bp
chr16 90024045 90024045 1 + C T UCEC 90024044 + 90024024 90024064 41 GTGGTGCGACTCATCCACCTCCGGCTGAAGCTCCAGGAGCT GTGGTGCGACTCATCCACCTCTGGCTGAAGCTCCAGGAGCT < 41bp 0.457582964396466 0.70105600877405 0.82631063 0.56278175 prediction 0.402112017548101 Functional Gain - DEF8 ENSG00000140995 CDS Human protein_coding chr16:90024044 chr16:90024045 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_129300 0 0 1 0 2 DEF8 chr16:90024068 5'GT 90024068 Upstream 24bp
chr16 1412532 1412532 1 + C A LUSC 1412531 + 1412511 1412551 41 GGCCGATGAGCTGATCACCCCCCAGGTAAGCGTGCGCTCGG GGCCGATGAGCTGATCACCCCACAGGTAAGCGTGCGCTCGG < 41bp 0.650549159766104 0.851601059607225 0.36633676 0.46497795 prediction 0.402103799682242 Functional Gain - GNPTG ENSG00000090581 CDS Human protein_coding chr16:1412531 chr16:1412532 synonymous SNV . 0 22 hm5C_associated_SNPs_129302 0 0 0 0 1 GNPTG chr16:1412535 5'GT 1412535 Upstream 4bp
chr17 76129546 76129546 1 + C T SKCM 76129545 + 76129525 76129565 41 AGTGGGGCCGGAGAGCAGCTCCGTGTACAGCATCCGCCTGG AGTGGGGCCGGAGAGCAGCTCTGTGTACAGCATCCGCCTGG < 41bp 0.45555017663529 0.701050361114834 0.38768628 0.31203985 prediction 0.402100722229668 Functional Gain - TMC8 ENSG00000167895 CDS Human protein_coding chr17:76129545 chr17:76129546 synonymous SNV . 0 22 hm5C_associated_SNPs_129304 0 0 0 0 2 TMC8 chr17:76129487 3'AG 76129487 Downstream 60bp
chr17 76129546 76129546 1 + C T SKCM 76129545 + 76129525 76129565 41 AGTGGGGCCGGAGAGCAGCTCCGTGTACAGCATCCGCCTGG AGTGGGGCCGGAGAGCAGCTCTGTGTACAGCATCCGCCTGG < 41bp 0.45555017663529 0.701050361114834 0.38768628 0.31203985 prediction 0.402100722229668 Functional Gain - TMC8 ENSG00000167895 CDS Human protein_coding chr17:76129545 chr17:76129546 synonymous SNV . 0 22 hm5C_associated_SNPs_129304 0 0 0 0 2 TMC8 chr17:76129623 5'GT 76129623 Upstream 78bp
chrX 89177107 89177107 1 + C T ESCA 89177106 + 89177086 89177126 41 TGGAGGCCGCTGCGGACGGCCCGGCTGAGACCCAAAGCCCG TGGAGGCCGCTGCGGACGGCCTGGCTGAGACCCAAAGCCCG < 41bp 0.555162225437008 0.756207249870786 0.3961192 0.29445487 prediction 0.402090048867557 Functional Gain - TGIF2LX ENSG00000153779 CDS Human protein_coding chrX:89177106 chrX:89177107 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_129307 0 0 0 0 1 TGIF2LX chrX:89177064 3'AG 89177064 Downstream 44bp
chr7 116770653 116770653 1 + A G UCEC 116770650 + 116770630 116770670 41 GACTCGGACCATCTGCGTCCCGCAGATGCAAGTATGAAAAA GACTCGGACCATCTGCGTCCCGCGGATGCAAGTATGAAAAA < 41bp 0.598800074314846 0.799843259390566 0.79652655 0.55547047 prediction 0.402086370151439 Functional Gain - ST7 ENSG00000004866 CDS Human protein_coding chr7:116770650 chr7:116770653 synonymous SNV . 0 24 hm5C_associated_SNPs_129309 0 0 1 0 1 ST7 chr7:116770660 5'GT 116770660 Upstream 8bp
chr1 228401183 228401183 1 - G C rs569727649 228401187 - 228401167 228401207 41 ACGTGGCCGACTCCTTCTCCCGCACCTCCAGATCTTGCAGC ACGTGGCCGACTCCTTCTCCCGCAGCTCCAGATCTTGCAGC < 41bp 0.406862799585542 0.701043079624591 0.068573385 0.527366 prediction 0.402086159249183 Functional Gain - OBSCN ENSG00000154358;ENSG00000162913 CDS Human protein_coding chr1:228401187 chr1:228401183 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_129310 0 0 0 0 1 OBSCN-AS1 chr1:228401123 5'GT 228401123 Upstream 61bp
chr19 48785666 48785666 1 + C T UCEC 48785665 + 48785645 48785685 41 AGACGTGGCTGTGAACTTCACCAAAGAGGAGTGGACCCTGC AGACGTGGCTGTGAACTTCACTAAAGAGGAGTGGACCCTGC < 41bp 0.624981081990081 0.826022889648012 0.08364838 0.099268675 prediction 0.402083615315863 Functional Gain - ZNF114 ENSG00000178150 CDS Human protein_coding chr19:48785665 chr19:48785666 synonymous SNV . 0 22 hm5C_associated_SNPs_129311 0 0 1 0 2 ZNF114 chr19:48785628 3'AG 48785628 Downstream 39bp
chr19 48785666 48785666 1 + C T UCEC 48785665 + 48785645 48785685 41 AGACGTGGCTGTGAACTTCACCAAAGAGGAGTGGACCCTGC AGACGTGGCTGTGAACTTCACTAAAGAGGAGTGGACCCTGC < 41bp 0.624981081990081 0.826022889648012 0.08364838 0.099268675 prediction 0.402083615315863 Functional Gain - ZNF114 ENSG00000178150 CDS Human protein_coding chr19:48785665 chr19:48785666 synonymous SNV . 0 22 hm5C_associated_SNPs_129311 0 0 1 0 2 ZNF114 chr19:48785754 5'GT 48785754 Upstream 89bp
chr7 127338982 127338982 1 + C A STAD 127338981 + 127338961 127339001 41 GTTGCAGAGGGCTTAGCCACCCGGAGAGAAGGCATGAGAGC GTTGCAGAGGGCTTAGCCACCAGGAGAGAAGGCATGAGAGC < 41bp 0.640209147053404 0.841250179178014 0.7920027 0.89381707 prediction 0.40208206424922 Functional Gain - SND1 ENSG00000197157 CDS Human protein_coding chr7:127338981 chr7:127338982 synonymous SNV . 0 22 hm5C_associated_SNPs_129312 0 0 1 0 2 SND1 chr7:127338929 3'AG 127338929 Downstream 54bp
chr7 127338982 127338982 1 + C A STAD 127338981 + 127338961 127339001 41 GTTGCAGAGGGCTTAGCCACCCGGAGAGAAGGCATGAGAGC GTTGCAGAGGGCTTAGCCACCAGGAGAGAAGGCATGAGAGC < 41bp 0.640209147053404 0.841250179178014 0.7920027 0.89381707 prediction 0.40208206424922 Functional Gain - SND1 ENSG00000197157 CDS Human protein_coding chr7:127338981 chr7:127338982 synonymous SNV . 0 22 hm5C_associated_SNPs_129312 0 0 1 0 2 SND1 chr7:127339007 5'GT 127339007 Upstream 26bp
chr3 133185682 133185682 1 + A G STAD 133185679 + 133185659 133185699 41 TGACTCTCCACAGCAACAGGCGGAGGTGGCCCACATGTCCC TGACTCTCCACAGCAACAGGCGGGGGTGGCCCACATGTCCC < 41bp 0.631563746703148 0.832602075348198 0.92645866 0.94531333 prediction 0.402076657290099 Functional Gain - BFSP2 ENSG00000170819 CDS Human protein_coding chr3:133185679 chr3:133185682 nonsynonymous SNV 0.968 1 24 hm5C_associated_SNPs_129314 0 0 0 0 1 BFSP2 chr3:133185672 3'AG 133185672 Downstream 11bp
chr2 209357999 209357999 1 + A G COAD 209357996 + 209357976 209358016 41 TCTCGTGGCTTAGGTTCAGGCAGAGGTGAAGAAGATGTGGA TCTCGTGGCTTAGGTTCAGGCAGGGGTGAAGAAGATGTGGA < 41bp 0.579663787007177 0.780694646346622 0.7267778 0.89077246 prediction 0.40206171867889 Functional Gain - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209357996 chr2:209357999 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_129320 0 0 0 0 1 PTH2R chr2:209357989 3'AG 209357989 Downstream 11bp
chr7 57528449 57528449 1 + C A LUAD 57528448 + 57528428 57528468 41 AGTTACATGTTCTCATTTCACCCAAGACCTTCAGTCAGAGC AGTTACATGTTCTCATTTCACACAAGACCTTCAGTCAGAGC < 41bp 0.441038562114198 0.701027717279643 0.015280724 0.022789717 prediction 0.402055434559287 Functional Gain - ZNF716 ENSG00000182111 CDS Human protein_coding chr7:57528448 chr7:57528449 synonymous SNV . 0 22 hm5C_associated_SNPs_129323 0 0 0 0 1 ZNF716 chr7:57528430 3'AG 57528430 Downstream 20bp
chr14 24649011 24649011 1 + T G UCEC 24649008 + 24648988 24649028 41 GGTTCTTGATCCCTATAGGGCAGTGGCACTGGAGCTGCAGG GGTTCTTGATCCCTATAGGGCAGGGGCACTGGAGCTGCAGG < 41bp 0.326303480118953 0.701024067927054 0.1484496 0.88323003 prediction 0.402048135854107 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24649008 chr14:24649011 nonsynonymous SNV 0.938 2 24 hm5C_associated_SNPs_129325 0 0 1 0 1 REC8 chr14:24649006 3'AG 24649006 Downstream 6bp
chr7 73630370 73630370 1 + C G OV 73630367 + 73630347 73630387 41 GCTGGTGCTGTTGGGGGTGGCAGCCAGTCTGTGTGTGCGCT GCTGGTGCTGTTGGGGGTGGCAGGCAGTCTGTGTGTGCGCT < 41bp 0.51721109388204 0.718235152595456 0.17158577 0.50322163 prediction 0.402048117426833 Functional Gain - LAT2 ENSG00000086730 CDS Human protein_coding chr7:73630367 chr7:73630370 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_129326 0 0 0 0 2 LAT2 chr7:73630277 3'AG 73630277 Downstream 94bp
chr7 73630370 73630370 1 + C G OV 73630367 + 73630347 73630387 41 GCTGGTGCTGTTGGGGGTGGCAGCCAGTCTGTGTGTGCGCT GCTGGTGCTGTTGGGGGTGGCAGGCAGTCTGTGTGTGCGCT < 41bp 0.51721109388204 0.718235152595456 0.17158577 0.50322163 prediction 0.402048117426833 Functional Gain - LAT2 ENSG00000086730 CDS Human protein_coding chr7:73630367 chr7:73630370 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_129326 0 0 0 0 2 LAT2 chr7:73630399 5'GT 73630399 Upstream 30bp
chr19 46025800 46025800 1 + C T ESCA 46025799 + 46025779 46025819 41 AGCTGGGGCCCCAGGCCTGGCCGCAGCTATTGCTGGAGCCA AGCTGGGGCCCCAGGCCTGGCTGCAGCTATTGCTGGAGCCA < 41bp 0.639369663370285 0.840386215475711 0.55083495 0.68148774 prediction 0.402033104210852 Functional Gain - VASP ENSG00000125753 CDS Human protein_coding chr19:46025799 chr19:46025800 nonsynonymous SNV 0.787 0 22 hm5C_associated_SNPs_129330 0 0 1 0 1 VASP chr19:46025839 5'GT 46025839 Upstream 40bp
chr19 9958760 9958760 1 + A G UCEC 9958757 + 9958737 9958777 41 GGACTTTGAGTCTCTGGCCTCACAGTTCAGCGACTGCAGCT GGACTTTGAGTCTCTGGCCTCACGGTTCAGCGACTGCAGCT < 41bp 0.627382340451592 0.828395575252079 0.30842534 0.6987481 prediction 0.402026469600975 Functional Gain - PIN1 ENSG00000127445 CDS Human protein_coding chr19:9958757 chr19:9958760 nonsynonymous SNV 0.991 1 24 hm5C_associated_SNPs_129332 0 0 1 0 2 PIN1 chr19:9958706 3'AG 9958706 Downstream 55bp
chr19 9958760 9958760 1 + A G UCEC 9958757 + 9958737 9958777 41 GGACTTTGAGTCTCTGGCCTCACAGTTCAGCGACTGCAGCT GGACTTTGAGTCTCTGGCCTCACGGTTCAGCGACTGCAGCT < 41bp 0.627382340451592 0.828395575252079 0.30842534 0.6987481 prediction 0.402026469600975 Functional Gain - PIN1 ENSG00000127445 CDS Human protein_coding chr19:9958757 chr19:9958760 nonsynonymous SNV 0.991 1 24 hm5C_associated_SNPs_129332 0 0 1 0 2 PIN1 chr19:9958816 5'GT 9958816 Upstream 57bp
chr4 74351740 74351740 1 + C T PRAD 74351739 + 74351719 74351759 41 TCCTTTCCCTACCCTGGATCCCGAAGAGAAATGCCAGGCTT TCCTTTCCCTACCCTGGATCCTGAAGAGAAATGCCAGGCTT < 41bp 0.620821852122477 0.821829894218957 0.2775882 0.2510182 prediction 0.402016084192959 Functional Gain - AFM ENSG00000079557 CDS Human protein_coding chr4:74351739 chr4:74351740 synonymous SNV . 0 22 hm5C_associated_SNPs_129335 0 0 0 0 1 AFM chr4:74351790 5'GT 74351790 Upstream 51bp
chr17 7942901 7942901 1 + C A rs76589243 7942900 + 7942880 7942920 41 GTGGCTGGAGGGGGCGGGGACCCTGGTGCTGCAGGAGGGTA GTGGCTGGAGGGGGCGGGGACACTGGTGCTGCAGGAGGGTA < 41bp 0.461579620799714 0.7010050739281 0.7315763 0.7609954 prediction 0.402010147856201 Functional Gain - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7942900 chr17:7942901 synonymous SNV . 0 22 hm5C_associated_SNPs_129337 0 0 0 0 1 ALOX15B chr17:7942923 5'GT 7942923 Upstream 23bp
chr11 48145257 48145257 1 + C A PRAD 48145253 + 48145233 48145273 41 AATGGCAATGGCACTGCCTCCTGCCGGGTTCTTCTTGAAAG AATGGCAATGGCACTGCCTCCTGCAGGGTTCTTCTTGAAAG < 41bp 0.281963555246572 0.701004610094476 0.21705347 0.33132 prediction 0.402009220188951 Functional Gain - PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48145253 chr11:48145257 synonymous SNV . 0 25 hm5C_associated_SNPs_129339 0 0 0 0 1 PTPRJ chr11:48145165 3'AG 48145165 Downstream 93bp
chr16 85954808 85954808 1 + C T SKCM 85954807 + 85954787 85954827 41 CCCGAGGAGCCGCCGCCAGACCAGGTCTTCCGGATGTTTCC CCCGAGGAGCCGCCGCCAGACTAGGTCTTCCGGATGTTTCC < 41bp 0.615424603881117 0.816427075748394 0.3411935 0.117735445 prediction 0.402004943734555 Functional Gain - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85954807 chr16:85954808 stopgain 0.973 1 22 hm5C_associated_SNPs_129341 0 0 0 0 1 IRF8 chr16:85954712 3'AG 85954712 Downstream 97bp
chr1 233507873 233507873 1 + C T SKCM 233507872 + 233507852 233507892 41 AGTTCCAGTCCCCCGAGCAGCCCCACAATGATGCCCCGACT AGTTCCAGTCCCCCGAGCAGCTCCACAATGATGCCCCGACT < 41bp 0.411080440327462 0.701000693443972 0.27353847 0.8554486 prediction 0.402001386887945 Functional Gain - MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233507872 chr1:233507873 nonsynonymous SNV 0.113 3 22 hm5C_associated_SNPs_129342 0 0 1 0 1 MAP3K21 chr1:233507784 3'AG 233507784 Downstream 90bp
chr8 36767034 36767034 1 + C T UCEC 36767033 + 36767013 36767053 41 GGCGATTTCTCTGGAATTTTCCCCAGATATACATTCTGCCT GGCGATTTCTCTGGAATTTTCTCCAGATATACATTCTGCCT < 41bp 0.435929506881671 0.700990625754232 0.055689543 0.94183755 prediction 0.401981251508465 Functional Gain - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36767033 chr8:36767034 nonsynonymous SNV 0.776 3 22 hm5C_associated_SNPs_129347 0 0 0 0 1 KCNU1 chr8:36767053 5'GT 36767053 Upstream 20bp
chr19 15807817 15807817 1 + C G LUAD 15807813 + 15807793 15807833 41 CCTGCCAGACCACACTGAGCCCCGCAGGAAGCTGGAATTGA CCTGCCAGACCACACTGAGCCCCGGAGGAAGCTGGAATTGA < 41bp 0.414548365700255 0.700989318406544 0.21365607 0.20805198 prediction 0.401978636813087 Functional Gain - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15807813 chr19:15807817 synonymous SNV . 0 25 hm5C_associated_SNPs_129349 0 0 1 0 1 CYP4F12 chr19:15807718 3'AG 15807718 Downstream 100bp
chr20 58545213 58545213 1 + C A UCEC 58545212 + 58545192 58545232 41 TGGAGCTGGAGGAGGAAGACCCGGGACCCTTTCCCAAACTC TGGAGCTGGAGGAGGAAGACCAGGGACCCTTTCCCAAACTC < 41bp 0.656239942926624 0.857224818715057 0.86076367 0.8943261 prediction 0.401969751576865 Functional Gain - CDH26 ENSG00000124215 CDS Human protein_coding chr20:58545212 chr20:58545213 nonsynonymous SNV 0.517 0 22 hm5C_associated_SNPs_129350 0 0 0 0 2 CDH26 chr20:58545137 3'AG 58545137 Downstream 77bp
chr20 58545213 58545213 1 + C A UCEC 58545212 + 58545192 58545232 41 TGGAGCTGGAGGAGGAAGACCCGGGACCCTTTCCCAAACTC TGGAGCTGGAGGAGGAAGACCAGGGACCCTTTCCCAAACTC < 41bp 0.656239942926624 0.857224818715057 0.86076367 0.8943261 prediction 0.401969751576865 Functional Gain - CDH26 ENSG00000124215 CDS Human protein_coding chr20:58545212 chr20:58545213 nonsynonymous SNV 0.517 0 22 hm5C_associated_SNPs_129350 0 0 0 0 2 CDH26 chr20:58545241 5'GT 58545241 Upstream 29bp
chr10 114711317 114711317 1 + T C GBM 114711315 + 114711295 114711335 41 CCCTTCATCATGATCCCCGACCTGACGAGCCCCTACCTCCC CCCTTCATCATGATCCCCGACCCGACGAGCCCCTACCTCCC < 41bp 0.532501836340166 0.733481710733471 0.035719514 0.03512627 prediction 0.40195974878661 Functional Gain - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114711315 chr10:114711317 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_129354 0 0 1 0 2 TCF7L2 chr10:114711242 3'AG 114711242 Downstream 76bp
chr10 114711317 114711317 1 + T C GBM 114711315 + 114711295 114711335 41 CCCTTCATCATGATCCCCGACCTGACGAGCCCCTACCTCCC CCCTTCATCATGATCCCCGACCCGACGAGCCCCTACCTCCC < 41bp 0.532501836340166 0.733481710733471 0.035719514 0.03512627 prediction 0.40195974878661 Functional Gain - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114711315 chr10:114711317 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_129354 0 0 1 0 2 TCF7L2 chr10:114711366 5'GT 114711366 Upstream 50bp
chr8 104383964 104383964 1 + C G rs556757186 104383963 + 104383943 104383983 41 TGCTGCTGCAGCTGCCCGCGCCGTCGAGCGCCTCTGAGATC TGCTGCTGCAGCTGCCCGCGCGGTCGAGCGCCTCTGAGATC < 41bp 0.385380016698186 0.700975511670612 0.24655047 0.37797415 prediction 0.401951023341224 Functional Gain - CTHRC1 ENSG00000164932 CDS Human protein_coding chr8:104383963 chr8:104383964 nonsynonymous SNV 0.989 2 22 hm5C_associated_SNPs_129358 0 0 1 0 1 CTHRC1 chr8:104384034 5'GT 104384034 Upstream 71bp
chr15 85384116 85384116 1 + C T COAD 85384115 + 85384095 85384135 41 GCCCGGCGGAGACATGGCACCCGGGACAGCACGTTGCAGGG GCCCGGCGGAGACATGGCACCTGGGACAGCACGTTGCAGGG < 41bp 0.468767516002648 0.700975131120835 0.8587501 0.8180206 prediction 0.40195026224167 Functional Gain - ALPK3 ENSG00000136383 CDS Human protein_coding chr15:85384115 chr15:85384116 nonsynonymous SNV 0.108 3 22 hm5C_associated_SNPs_129359 0 0 0 0 1 ALPK3 chr15:85384163 5'GT 85384163 Upstream 48bp
chr11 70279785 70279785 1 + C A UCEC 70279781 + 70279761 70279801 41 ACCTACGATGAGTACGAGAACGATCTGGGGATCACAGCCGT ACCTACGATGAGTACGAGAACGATATGGGGATCACAGCCGT < 41bp 0.28122420081078 0.700961267352291 0.17123237 0.18835491 prediction 0.401922534704582 Functional Gain - CTTN ENSG00000085733 CDS Human protein_coding chr11:70279781 chr11:70279785 nonsynonymous SNV 0.854 2 25 hm5C_associated_SNPs_129363 0 0 1 0 2 CTTN chr11:70279753 3'AG 70279753 Downstream 33bp
chr11 70279785 70279785 1 + C A UCEC 70279781 + 70279761 70279801 41 ACCTACGATGAGTACGAGAACGATCTGGGGATCACAGCCGT ACCTACGATGAGTACGAGAACGATATGGGGATCACAGCCGT < 41bp 0.28122420081078 0.700961267352291 0.17123237 0.18835491 prediction 0.401922534704582 Functional Gain - CTTN ENSG00000085733 CDS Human protein_coding chr11:70279781 chr11:70279785 nonsynonymous SNV 0.854 2 25 hm5C_associated_SNPs_129363 0 0 1 0 2 CTTN chr11:70279824 5'GT 70279824 Upstream 40bp
chr11 75431126 75431126 1 + C T UCEC 75431125 + 75431105 75431145 41 GCGGCCTGGTGGTATCTGGACCGAGACAAGCCACGGCAGGG GCGGCCTGGTGGTATCTGGACTGAGACAAGCCACGGCAGGG < 41bp 0.459398186400595 0.700958935432121 0.25721806 0.18840134 prediction 0.401917870864241 Functional Gain - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75431125 chr11:75431126 stopgain 0.074 0 22 hm5C_associated_SNPs_129364 0 0 0 0 2 MOGAT2 chr11:75431037 3'AG 75431037 Downstream 90bp
chr11 75431126 75431126 1 + C T UCEC 75431125 + 75431105 75431145 41 GCGGCCTGGTGGTATCTGGACCGAGACAAGCCACGGCAGGG GCGGCCTGGTGGTATCTGGACTGAGACAAGCCACGGCAGGG < 41bp 0.459398186400595 0.700958935432121 0.25721806 0.18840134 prediction 0.401917870864241 Functional Gain - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75431125 chr11:75431126 stopgain 0.074 0 22 hm5C_associated_SNPs_129364 0 0 0 0 2 MOGAT2 chr11:75431215 5'GT 75431215 Upstream 90bp
chr5 161309653 161309653 1 + C T SKCM 161309652 + 161309632 161309672 41 GAAGATGGATCACGTCTAAACCAGTATGACCTTCTTGGACA GAAGATGGATCACGTCTAAACTAGTATGACCTTCTTGGACA < 41bp 0.450053214892922 0.700955755762197 0.36838457 0.3596142 prediction 0.401911511524393 Functional Gain - GABRA1 ENSG00000022355 CDS Human protein_coding chr5:161309652 chr5:161309653 stopgain 0.979 1 22 hm5C_associated_SNPs_129365 0 0 0 0 2 GABRA1 chr5:161309564 3'AG 161309564 Downstream 90bp
chr5 161309653 161309653 1 + C T SKCM 161309652 + 161309632 161309672 41 GAAGATGGATCACGTCTAAACCAGTATGACCTTCTTGGACA GAAGATGGATCACGTCTAAACTAGTATGACCTTCTTGGACA < 41bp 0.450053214892922 0.700955755762197 0.36838457 0.3596142 prediction 0.401911511524393 Functional Gain - GABRA1 ENSG00000022355 CDS Human protein_coding chr5:161309652 chr5:161309653 stopgain 0.979 1 22 hm5C_associated_SNPs_129365 0 0 0 0 2 GABRA1 chr5:161309707 5'GT 161309707 Upstream 55bp
chr11 67186991 67186991 1 - G T UCEC 67186992 - 67186972 67187012 41 GCAGACGCCATGCCTGCCGCCCCCGCCAGCGCCAGCCACTG GCAGACGCCATGCCTGCCGCCACCGCCAGCGCCAGCCACTG < 41bp 0.438462245078238 0.700946174561214 0.023981154 0.0253824 prediction 0.401892349122429 Functional Gain - CARNS1 ENSG00000172508;ENSG00000172531 CDS Human other chr11:67186992 chr11:67186991 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_129367 0 0 0 0 1 CARNS1 chr11:67187068 3'AG 67187068 Downstream 78bp
chr8 28908604 28908604 1 + C A LIHC 28908603 + 28908583 28908623 41 GTGGAAATGGCAGCAGTCAACCACACTATCTTGGCATTGGC GTGGAAATGGCAGCAGTCAACAACACTATCTTGGCATTGGC < 41bp 0.457138341195234 0.700945061472445 0.123491526 0.19375336 prediction 0.40189012294489 Functional Gain - HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28908603 chr8:28908604 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_129368 0 0 1 0 1 HMBOX1 chr8:28908535 3'AG 28908535 Downstream 70bp
chrX 16168494 16168494 1 + A G LUSC 16168491 + 16168471 16168511 41 GCCCTGATGAAGATCTGCCTCAAAGCCGCCTTTATCTGGAT GCCCTGATGAAGATCTGCCTCAAGGCCGCCTTTATCTGGAT < 41bp 0.620572911640319 0.821514167575771 0.7931566 0.88660145 prediction 0.401882511870904 Functional Gain - GRPR ENSG00000126010 CDS Human protein_coding chrX:16168491 chrX:16168494 synonymous SNV . 0 24 hm5C_associated_SNPs_129369 0 0 0 0 1 GRPR chrX:16168428 3'AG 16168428 Downstream 67bp
chr10 46918224 46918224 1 + A G UCEC 46918221 + 46918201 46918241 41 GACTTACTGGCATATGTGTCCTCAAAACATTCCTACCTCAG GACTTACTGGCATATGTGTCCTCGAAACATTCCTACCTCAG < 41bp 0.547738295904664 0.748677150016554 0.21695635 0.37557423 prediction 0.401877708223779 Functional Gain - FAM35BP ENSG00000165874 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:46918221 chr10:46918224 . . 0 24 hm5C_associated_SNPs_129370 0 0 0 12 1 FAM35BP chr10:46918169 3'AG 46918169 Downstream 56bp
chr17 18344603 18344603 1 + C A rs549877357 18344602 + 18344582 18344622 41 CTGGAGATGCAGATAGAAGGCCTGAAGGAGGAGCTGGCCTA CTGGAGATGCAGATAGAAGGCATGAAGGAGGAGCTGGCCTA < 41bp 0.445070986836681 0.700938273131872 0.39164644 0.38240445 prediction 0.401876546263743 Functional Gain - KRT16P1 ENSG00000214856 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:18344602 chr17:18344603 . . 0 22 hm5C_associated_SNPs_129371 0 0 0 0 1 KRT16P1 chr17:18344644 5'GT 18344644 Upstream 42bp
chr10 82331301 82331301 1 + A G UCEC 82331298 + 82331278 82331318 41 ATGGAAGACCGCAAGGCTGCCAAAGTCCTGGAGGAACGCAT ATGGAAGACCGCAAGGCTGCCAAGGTCCTGGAGGAACGCAT < 41bp 0.455630863114111 0.700935494488627 0.75093913 0.800592 prediction 0.401870988977254 Functional Gain - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82331298 chr10:82331301 synonymous SNV . 0 24 hm5C_associated_SNPs_129372 0 0 0 0 1 SH2D4B chr10:82331334 5'GT 82331334 Upstream 34bp
chr12 31242073 31242073 1 + T C CHOL 31242071 + 31242051 31242091 41 AGGATGTTCGGCTGGTCTCCCTTGGCTCCCGGCAGGTAAAC AGGATGTTCGGCTGGTCTCCCTCGGCTCCCGGCAGGTAAAC < 41bp 0.476611889498414 0.70093341779945 0.11024353 0.2512943 prediction 0.4018668355989 Functional Gain - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31242071 chr12:31242073 synonymous SNV . 0 23 hm5C_associated_SNPs_129373 0 0 1 0 1 DDX11 chr12:31242085 5'GT 31242085 Upstream 13bp
chr5 147261132 147261132 1 + T C KIRC 147261129 + 147261109 147261149 41 TCTGAAAACTCTGGGCATTTCTGTTGAGCACCTTGTGGAGG TCTGAAAACTCTGGGCATTTCTGCTGAGCACCTTGTGGAGG < 41bp 0.587075699763727 0.788008783774479 0.07662931 0.065092266 prediction 0.401866168021504 Functional Gain - SCGB3A2 ENSG00000164265 CDS Human protein_coding chr5:147261129 chr5:147261132 nonsynonymous SNV 0.917 0 24 hm5C_associated_SNPs_129374 0 0 0 0 1 SCGB3A2 chr5:147261211 5'GT 147261211 Upstream 80bp
chr3 101573519 101573519 1 + A G SKCM 101573516 + 101573496 101573536 41 ACATGCTGGATATTAAAGAGCACAATGGACAGGTGAGGACC ACATGCTGGATATTAAAGAGCACGATGGACAGGTGAGGACC < 41bp 0.618236589434969 0.819160809916163 0.036118984 0.078237444 prediction 0.401848440962388 Functional Gain - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101573516 chr3:101573519 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_129376 0 0 1 0 2 NFKBIZ chr3:101573422 3'AG 101573422 Downstream 98bp
chr3 101573519 101573519 1 + A G SKCM 101573516 + 101573496 101573536 41 ACATGCTGGATATTAAAGAGCACAATGGACAGGTGAGGACC ACATGCTGGATATTAAAGAGCACGATGGACAGGTGAGGACC < 41bp 0.618236589434969 0.819160809916163 0.036118984 0.078237444 prediction 0.401848440962388 Functional Gain - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101573516 chr3:101573519 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_129376 0 0 1 0 2 NFKBIZ chr3:101573527 5'GT 101573527 Upstream 9bp
chr5 109106207 109106207 1 + C T LUSC 109106206 + 109106186 109106226 41 TGGTTGTCCCTGGGGAGTCCCCCCAGAAACAATACATCCTG TGGTTGTCCCTGGGGAGTCCCTCCAGAAACAATACATCCTG < 41bp 0.417129325100804 0.700923775944612 0.052253395 0.9642407 prediction 0.401847551889225 Functional Gain - MAN2A1 ENSG00000112893 CDS Human protein_coding chr5:109106206 chr5:109106207 synonymous SNV . 0 22 hm5C_associated_SNPs_129377 0 0 1 0 1 MAN2A1 chr5:109106242 5'GT 109106242 Upstream 36bp
chr10 3143147 3143147 1 + C A SARC 3143143 + 3143123 3143163 41 GGGTGACTGGAGGGAGAAGCCTGGCTGCTGGTCACACCGCT GGGTGACTGGAGGGAGAAGCCTGGATGCTGGTCACACCGCT < 41bp 0.730839683127581 0.931759502506216 0.44186488 0.48817718 prediction 0.40183963875727 Functional Gain - PFKP ENSG00000067057 CDS Human protein_coding chr10:3143143 chr10:3143147 synonymous SNV . 0 25 hm5C_associated_SNPs_129380 0 0 1 0 2 PFKP chr10:3143113 3'AG 3143113 Downstream 35bp
chr10 3143147 3143147 1 + C A SARC 3143143 + 3143123 3143163 41 GGGTGACTGGAGGGAGAAGCCTGGCTGCTGGTCACACCGCT GGGTGACTGGAGGGAGAAGCCTGGATGCTGGTCACACCGCT < 41bp 0.730839683127581 0.931759502506216 0.44186488 0.48817718 prediction 0.40183963875727 Functional Gain - PFKP ENSG00000067057 CDS Human protein_coding chr10:3143143 chr10:3143147 synonymous SNV . 0 25 hm5C_associated_SNPs_129380 0 0 1 0 2 PFKP chr10:3143192 5'GT 3143192 Upstream 46bp
chr8 104225199 104225199 1 + A G STAD 104225196 + 104225176 104225216 41 GGTGTGCCCCGATCTACAGCCCCAGGTGGAATACCCAACCC GGTGTGCCCCGATCTACAGCCCCGGGTGGAATACCCAACCC < 41bp 0.628655803697392 0.829574111679507 0.45111227 0.64099514 prediction 0.40183661596423 Functional Gain - BAALC ENSG00000164929 CDS Human protein_coding chr8:104225196 chr8:104225199 synonymous SNV . 0 24 hm5C_associated_SNPs_129381 0 0 0 0 1 BAALC chr8:104225147 3'AG 104225147 Downstream 53bp
chr10 8100333 8100333 1 + C A UCEC 8100332 + 8100312 8100352 41 TGGCTGGACGGCGGCAAAGCCCTGGGCAGCCACCACACCGC TGGCTGGACGGCGGCAAAGCCATGGGCAGCCACCACACCGC < 41bp 0.649617800054951 0.850535850458361 0.52499145 0.7763057 prediction 0.40183610080682 Functional Gain - GATA3 ENSG00000107485 CDS Human protein_coding chr10:8100332 chr10:8100333 nonsynonymous SNV 0.989 2 22 hm5C_associated_SNPs_129382 0 0 0 0 1 GATA3 chr10:8100268 3'AG 8100268 Downstream 66bp
chr9 130911884 130911884 1 + T C STAD 130911882 + 130911862 130911902 41 GCCCAGGACTCCACCTCAGACCTGATCCCAGCCCCACCTCT GCCCAGGACTCCACCTCAGACCCGATCCCAGCCCCACCTCT < 41bp 0.44887858108145 0.700916044486947 0.11503887 0.12752616 prediction 0.401832088973893 Functional Gain - LCN2 ENSG00000148346 CDS Human protein_coding chr9:130911882 chr9:130911884 nonsynonymous SNV 0.241 1 23 hm5C_associated_SNPs_129383 0 0 0 0 1 LCN2 chr9:130911942 5'GT 130911942 Upstream 59bp
chr3 48414274 48414274 1 + C T rs17080138 48414273 + 48414253 48414293 41 ATGAAATGGAGATCCGATTGCCTGACTTAGCTTTGAAGCGA ATGAAATGGAGATCCGATTGCTTGACTTAGCTTTGAAGCGA < 41bp 0.459533015631762 0.700911783674546 0.35903823 0.37977755 prediction 0.401823567349093 Functional Gain - FBXW12 ENSG00000164049 CDS Human protein_coding chr3:48414273 chr3:48414274 nonsynonymous SNV 0.007 3 22 hm5C_associated_SNPs_129384 0 1 0 0 1 FBXW12 chr3:48414347 5'GT 48414347 Upstream 74bp
chr6 109080688 109080688 1 + C T UCEC 109080687 + 109080667 109080707 41 ACTGCCAGGTAATGCTAACCCCGAATCCTTGGTGCCTGTGT ACTGCCAGGTAATGCTAACCCTGAATCCTTGGTGCCTGTGT < 41bp 0.491558053955619 0.700906991608016 0.51646966 0.22670376 prediction 0.401813983216033 Functional Gain - LINC00222 ENSG00000203801 ncRNA_exonic Human lincRNA chr6:109080687 chr6:109080688 . . 0 22 hm5C_associated_SNPs_129386 0 0 0 0 1 LINC00222 chr6:109080748 5'GT 109080748 Upstream 61bp
chr1 93584949 93584949 1 + C A COAD 93584945 + 93584925 93584965 41 GACCAGAATACCTCAAACGTCTACCATTACAGTGGTAAGTG GACCAGAATACCTCAAACGTCTACAATTACAGTGGTAAGTG < 41bp 0.273960604033497 0.700903532846306 0.08757824 0.8309567 prediction 0.401807065692613 Functional Gain - MTF2 ENSG00000143033 CDS Human protein_coding chr1:93584945 chr1:93584949 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_129387 0 0 1 0 2 MTF2 chr1:93584890 3'AG 93584890 Downstream 60bp
chr1 93584949 93584949 1 + C A COAD 93584945 + 93584925 93584965 41 GACCAGAATACCTCAAACGTCTACCATTACAGTGGTAAGTG GACCAGAATACCTCAAACGTCTACAATTACAGTGGTAAGTG < 41bp 0.273960604033497 0.700903532846306 0.08757824 0.8309567 prediction 0.401807065692613 Functional Gain - MTF2 ENSG00000143033 CDS Human protein_coding chr1:93584945 chr1:93584949 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_129387 0 0 1 0 2 MTF2 chr1:93584958 5'GT 93584958 Upstream 10bp
chr10 18242215 18242215 1 + C A LUAD 18242214 + 18242194 18242234 41 GGAAGCGTGGAAATGTGCTTCCGGACAAAGCTCTCAGTATC GGAAGCGTGGAAATGTGCTTCAGGACAAAGCTCTCAGTATC < 41bp 0.645661131049542 0.846560446034817 0.5060873 0.7967105 prediction 0.40179862997055 Functional Gain - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18242214 chr10:18242215 synonymous SNV . 0 22 hm5C_associated_SNPs_129388 0 0 0 0 1 SLC39A12 chr10:18242120 3'AG 18242120 Downstream 96bp
chr16 8729135 8729135 1 + C G rs530526653 8729132 + 8729112 8729152 41 GGCACGGGGCTCGCTAGCATCATCGCAGCCACCATGGCACG GGCACGGGGCTCGCTAGCATCATGGCAGCCACCATGGCACG < 41bp 0.517611056235076 0.718505443779434 0.6085416 0.86004627 prediction 0.401788775088717 Functional Gain - METTL22 ENSG00000067365 CDS Human protein_coding chr16:8729132 chr16:8729135 nonsynonymous SNV 0.361 3 24 hm5C_associated_SNPs_129392 0 0 1 0 1 METTL22 chr16:8729169 5'GT 8729169 Upstream 35bp
chr17 78196510 78196510 1 + C G HNSC 78196509 + 78196489 78196529 41 GTATTTCTTCCTGGGCACCTCCCGGGATGTGACTCTGGGCC GTATTTCTTCCTGGGCACCTCGCGGGATGTGACTCTGGGCC < 41bp 0.704780662983912 0.905674741736209 0.27270395 0.3682894 prediction 0.401788157504594 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78196509 chr17:78196510 synonymous SNV . 0 22 hm5C_associated_SNPs_129393 0 0 1 0 1 SLC26A11 chr17:78196454 3'AG 78196454 Downstream 57bp
chr1 212459623 212459623 1 + C T rs351403 212459622 + 212459602 212459642 41 GGCAGAGCTGCACCCGCTGCCCCAGCTCAAAGGTAACCTCC GGCAGAGCTGCACCCGCTGCCTCAGCTCAAAGGTAACCTCC < 41bp 0.587863526807601 0.788755865075155 0.13321501 0.06380463 prediction 0.401784676535108 Functional Gain - PPP2R5A ENSG00000066027 CDS Human protein_coding chr1:212459622 chr1:212459623 synonymous SNV . 0 22 hm5C_associated_SNPs_129394 0 0 1 0 1 PPP2R5A chr1:212459633 5'GT 212459633 Upstream 11bp
chr4 89574213 89574213 1 + C T UCEC 89574212 + 89574192 89574232 41 TGGCTGGGGGATGAATAATGCCGGGCAGCTAGGGCTCAGTG TGGCTGGGGGATGAATAATGCTGGGCAGCTAGGGCTCAGTG < 41bp 0.619956177051877 0.820847501201047 0.76846206 0.61863995 prediction 0.401782648298341 Functional Gain - HERC3 ENSG00000138641 CDS Human protein_coding chr4:89574212 chr4:89574213 synonymous SNV . 0 22 hm5C_associated_SNPs_129395 0 0 1 0 1 HERC3 chr4:89574241 5'GT 89574241 Upstream 29bp
chr5 177546849 177546849 1 + C T rs146962131 177546848 + 177546828 177546868 41 GACTATGCCACCCTCTACTACCGGGAACATTCTCGCGCGGG GACTATGCCACCCTCTACTACTGGGAACATTCTCGCGCGGG < 41bp 0.4571002851516 0.700885794024432 0.39586216 0.14837256 prediction 0.401771588048864 Functional Gain - N4BP3 ENSG00000145911 CDS Human protein_coding chr5:177546848 chr5:177546849 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_129396 0 0 0 0 1 N4BP3 chr5:177546914 5'GT 177546914 Upstream 66bp
chr16 1825092 1825092 1 + C T LUAD 1825091 + 1825071 1825111 41 GATCTCCCCCGAGACCACCGCCCGGCCCCACCTGGCTGTCA GATCTCCCCCGAGACCACCGCTCGGCCCCACCTGGCTGTCA < 41bp 0.455861957685812 0.700879807501382 0.4259249 0.36576462 prediction 0.401759615002764 Functional Gain - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825091 chr16:1825092 synonymous SNV . 0 22 hm5C_associated_SNPs_129399 0 0 1 0 3 EME2 chr16:1825042 3'AG 1825042 Downstream 51bp
chr16 1825092 1825092 1 + C T LUAD 1825091 + 1825071 1825111 41 GATCTCCCCCGAGACCACCGCCCGGCCCCACCTGGCTGTCA GATCTCCCCCGAGACCACCGCTCGGCCCCACCTGGCTGTCA < 41bp 0.455861957685812 0.700879807501382 0.4259249 0.36576462 prediction 0.401759615002764 Functional Gain - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825091 chr16:1825092 synonymous SNV . 0 22 hm5C_associated_SNPs_129399 0 0 1 0 3 EME2 chr16:1825133 5'GT 1825133 Upstream 42bp
chr16 1825092 1825092 1 + C T LUAD 1825091 + 1825071 1825111 41 GATCTCCCCCGAGACCACCGCCCGGCCCCACCTGGCTGTCA GATCTCCCCCGAGACCACCGCTCGGCCCCACCTGGCTGTCA < 41bp 0.455861957685812 0.700879807501382 0.4259249 0.36576462 prediction 0.401759615002764 Functional Gain - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825091 chr16:1825092 synonymous SNV . 0 22 hm5C_associated_SNPs_129399 0 0 1 0 3 EME2 chr16:1825189 5'GT 1825189 Upstream 98bp
chr15 48052516 48052516 1 + C T COAD 48052515 + 48052495 48052535 41 TTGCAGATTCAAGGCAATATCCGGTTTTTAGAGGACGCCCT TTGCAGATTCAAGGCAATATCTGGTTTTTAGAGGACGCCCT < 41bp 0.468538815440153 0.700874430261554 0.3817528 0.14754912 prediction 0.401748860523107 Functional Gain - SEMA6D ENSG00000137872 CDS Human protein_coding chr15:48052515 chr15:48052516 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_129402 0 0 0 0 2 SEMA6D chr15:48052501 3'AG 48052501 Downstream 16bp
chr15 48052516 48052516 1 + C T COAD 48052515 + 48052495 48052535 41 TTGCAGATTCAAGGCAATATCCGGTTTTTAGAGGACGCCCT TTGCAGATTCAAGGCAATATCTGGTTTTTAGAGGACGCCCT < 41bp 0.468538815440153 0.700874430261554 0.3817528 0.14754912 prediction 0.401748860523107 Functional Gain - SEMA6D ENSG00000137872 CDS Human protein_coding chr15:48052515 chr15:48052516 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_129402 0 0 0 0 2 SEMA6D chr15:48052612 5'GT 48052612 Upstream 97bp
chr10 104629326 104629326 1 + C A rs532796033 104629322 + 104629302 104629342 41 GGCCGAGGAGACAGTGAGTGCGCGCCCTGAGTCGCAGGCCG GGCCGAGGAGACAGTGAGTGCGCGACCTGAGTCGCAGGCCG < 41bp 0.670788869082319 0.871661566711083 0.30997914 0.5882082 prediction 0.401745395257527 Functional Gain - BORCS7-ASMT ENSG00000214435 UTR5 Human protein_coding chr10:104629322 chr10:104629326 . . 0 25 hm5C_associated_SNPs_129404 0 0 0 0 1 AS3MT chr10:104629350 5'GT 104629350 Upstream 25bp
chr20 61451312 61451312 1 + C T UCEC 61451311 + 61451291 61451331 41 GACGAGATGGACCCCCTGGACCCAAGGGTGCCCCTGGGGAA GACGAGATGGACCCCCTGGACTCAAGGGTGCCCCTGGGGAA < 41bp 0.638544852327731 0.839413425013616 0.09907371 0.06073734 prediction 0.40173714537177 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61451311 chr20:61451312 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_129405 0 0 1 0 1 COL9A3 chr20:61451334 5'GT 61451334 Upstream 23bp
chr1 160314553 160314553 1 + C A UCEC 160314552 + 160314532 160314572 41 GTGGAGAGGAAGATATATATCCCCTTAAATAAAACAGCTCC GTGGAGAGGAAGATATATATCACCTTAAATAAAACAGCTCC < 41bp 0.437970980397544 0.700855975559081 0.039461523 0.054193318 prediction 0.401711951118163 Functional Gain - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160314552 chr1:160314553 nonsynonymous SNV 0.996 0 22 hm5C_associated_SNPs_129411 0 0 1 0 1 NCSTN chr1:160314512 3'AG 160314512 Downstream 42bp
chr17 47895285 47895285 1 + C T SKCM 47895284 + 47895264 47895304 41 CCTGGTATCATTCTCCATATCCTGAAGAATATGCACGGCTG CCTGGTATCATTCTCCATATCTTGAAGAATATGCACGGCTG < 41bp 0.441397247679979 0.700855434872867 0.03463319 0.04356292 prediction 0.401710869745734 Functional Gain - KAT7 ENSG00000136504 CDS Human protein_coding chr17:47895284 chr17:47895285 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_129412 0 0 1 0 1 KAT7 chr17:47895373 5'GT 47895373 Upstream 89bp
chr12 7463150 7463150 1 + C T STAD 7463149 + 7463129 7463169 41 TCCCAGGGATCATCTTCATGCCGGGAACAATCCAGCTGACA TCCCAGGGATCATCTTCATGCTGGGAACAATCCAGCTGACA < 41bp 0.601958840580233 0.802807588299722 0.39606208 0.24623519 prediction 0.401697495438977 Functional Gain - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7463149 chr12:7463150 nonsynonymous SNV 0.212 3 22 hm5C_associated_SNPs_129415 0 0 0 0 1 ACSM4 chr12:7463135 3'AG 7463135 Downstream 16bp
chr19 50391574 50391574 1 + C T LUAD 50391573 + 50391553 50391593 41 CCGCCAGCTAACCGCCTGCCCCGTGAGTCCCCGTCCGCCCC CCGCCAGCTAACCGCCTGCCCTGTGAGTCCCCGTCCGCCCC < 41bp 0.464325096363377 0.700846166897036 0.54293513 0.18804088 prediction 0.401692333794072 Functional Gain - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50391573 chr19:50391574 synonymous SNV . 0 22 hm5C_associated_SNPs_129416 0 0 0 0 1 TBC1D17 chr19:50391574 5'GT 50391574 Upstream 1bp
chr17 15928399 15928399 1 + T C LIHC 15928396 + 15928376 15928416 41 ACGCCTGTGCTCGCTACCTTCTGTTCTCCAAGCAGCCGTCA ACGCCTGTGCTCGCTACCTTCTGCTCTCCAAGCAGCCGTCA < 41bp 0.481766735525647 0.700843902673372 0.019704819 0.027236223 prediction 0.401687805346743 Functional Gain - TTC19 ENSG00000011295 CDS Human protein_coding chr17:15928396 chr17:15928399 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_129418 0 0 1 0 2 TTC19 chr17:15928331 3'AG 15928331 Downstream 69bp
chr17 15928399 15928399 1 + T C LIHC 15928396 + 15928376 15928416 41 ACGCCTGTGCTCGCTACCTTCTGTTCTCCAAGCAGCCGTCA ACGCCTGTGCTCGCTACCTTCTGCTCTCCAAGCAGCCGTCA < 41bp 0.481766735525647 0.700843902673372 0.019704819 0.027236223 prediction 0.401687805346743 Functional Gain - TTC19 ENSG00000011295 CDS Human protein_coding chr17:15928396 chr17:15928399 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_129418 0 0 1 0 2 TTC19 chr17:15928485 5'GT 15928485 Upstream 87bp
chr11 65620199 65620199 1 + C T LUSC 65620198 + 65620178 65620218 41 GAACCGGGAGGTGCGGCCCGCCGAGAGCCACCAGCAGCTGT GAACCGGGAGGTGCGGCCCGCTGAGAGCCACCAGCAGCTGT < 41bp 0.453568730484566 0.700842651708969 0.77348673 0.84886384 prediction 0.401685303417938 Functional Gain - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65620198 chr11:65620199 synonymous SNV . 0 22 hm5C_associated_SNPs_129419 0 0 0 0 2 SNX32 chr11:65620101 3'AG 65620101 Downstream 99bp
chr11 65620199 65620199 1 + C T LUSC 65620198 + 65620178 65620218 41 GAACCGGGAGGTGCGGCCCGCCGAGAGCCACCAGCAGCTGT GAACCGGGAGGTGCGGCCCGCTGAGAGCCACCAGCAGCTGT < 41bp 0.453568730484566 0.700842651708969 0.77348673 0.84886384 prediction 0.401685303417938 Functional Gain - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65620198 chr11:65620199 synonymous SNV . 0 22 hm5C_associated_SNPs_129419 0 0 0 0 2 SNX32 chr11:65620260 5'GT 65620260 Upstream 62bp
chr20 53171576 53171576 1 + T A LUSC 53171574 + 53171554 53171594 41 CTGCATATTTCAGGTGTTATCATAAGGTAAGACTCAATTGC CTGCATATTTCAGGTGTTATCAAAAGGTAAGACTCAATTGC < 41bp 0.500757086670288 0.701599733036076 0.60136956 0.8625201 prediction 0.401685292731577 Functional Gain - DOK5 ENSG00000101134 CDS Human protein_coding chr20:53171574 chr20:53171576 nonsynonymous SNV 0.992 3 23 hm5C_associated_SNPs_129420 0 0 0 0 1 DOK5 chr20:53171579 5'GT 53171579 Upstream 4bp
chr5 169533519 169533519 1 + C A rs148101435 169533515 + 169533495 169533535 41 CGACTGCTTCAAGAAGGTGCCCCGCGACGAGGACGACCCGG CGACTGCTTCAAGAAGGTGCCCCGAGACGAGGACGACCCGG < 41bp 0.294182486257027 0.700841878112824 0.058666408 0.12542021 prediction 0.401683756225648 Functional Gain - FOXI1 ENSG00000168269 CDS Human protein_coding chr5:169533515 chr5:169533519 synonymous SNV . 0 25 hm5C_associated_SNPs_129422 0 0 0 0 1 FOXI1 chr5:169533535 5'GT 169533535 Upstream 17bp
chr8 17419558 17419558 1 + T C UCEC 17419556 + 17419536 17419576 41 CTCGCGCTGTTTCTTGTTCTCTTCGTTGCCATCGTTCTCAC CTCGCGCTGTTTCTTGTTCTCTCCGTTGCCATCGTTCTCAC < 41bp 0.685016782258473 0.885857989141317 0.13344783 0.10650727 prediction 0.401682413765688 Functional Gain - SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17419556 chr8:17419558 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_129424 0 0 1 0 1 SLC7A2 chr8:17419619 5'GT 17419619 Upstream 62bp
chr19 41630625 41630625 1 + C T SKCM 41630624 + 41630604 41630644 41 GCTTCCCGCTTCCTCTCCAGCCCGCGTGCAGGAGGAGATCG GCTTCCCGCTTCCTCTCCAGCTCGCGTGCAGGAGGAGATCG < 41bp 0.565360172994496 0.76619490917609 0.093966365 0.09780881 prediction 0.401669472363188 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41630624 chr19:41630625 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_129426 0 0 0 0 1 CYP2F1 chr19:41630624 3'AG 41630624 Downstream 2bp
chr7 75610852 75610852 1 + T A LIHC 75610850 + 75610830 75610870 41 CCCAGCTTGGAGGAGGACTTCATCACCTGGCGAGAGCAGTT CCCAGCTTGGAGGAGGACTTCAACACCTGGCGAGAGCAGTT < 41bp 0.530847171026751 0.731679775266628 0.10334262 0.1720064 prediction 0.401665208479754 Functional Gain - POR ENSG00000127948 CDS Human protein_coding chr7:75610850 chr7:75610852 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_129427 0 0 1 0 2 POR chr7:75610835 3'AG 75610835 Downstream 18bp
chr7 75610852 75610852 1 + T A LIHC 75610850 + 75610830 75610870 41 CCCAGCTTGGAGGAGGACTTCATCACCTGGCGAGAGCAGTT CCCAGCTTGGAGGAGGACTTCAACACCTGGCGAGAGCAGTT < 41bp 0.530847171026751 0.731679775266628 0.10334262 0.1720064 prediction 0.401665208479754 Functional Gain - POR ENSG00000127948 CDS Human protein_coding chr7:75610850 chr7:75610852 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_129427 0 0 1 0 2 POR chr7:75610924 5'GT 75610924 Upstream 73bp
chr9 90388382 90388382 1 + T C UCEC 90388379 + 90388359 90388399 41 CTTTTAGTGCAGCTGGGGCTCTGTAAGGACAGATGTTAGGA CTTTTAGTGCAGCTGGGGCTCTGCAAGGACAGATGTTAGGA < 41bp 0.522437754455808 0.723270290480892 0.36040586 0.89332986 prediction 0.401665072050167 Functional Gain - CTSL3P ENSG00000188029 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:90388379 chr9:90388382 . . 0 24 hm5C_associated_SNPs_129428 0 0 0 0 1 CTSL3P chr9:90388366 3'AG 90388366 Downstream 17bp
chr20 62373262 62373262 1 + C T rs145320298 62373261 + 62373241 62373281 41 GAAGGAGGCCCTGGTGCGGCCCCCAGGCAGCTACAGCAGCA GAAGGAGGCCCTGGTGCGGCCTCCAGGCAGCTACAGCAGCA < 41bp 0.648181200959807 0.849008606826043 0.082259566 0.9292581 prediction 0.401654811732472 Functional Gain - SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62373261 chr20:62373262 synonymous SNV . 0 22 hm5C_associated_SNPs_129431 0 0 1 0 1 SLC2A4RG chr20:62373222 3'AG 62373222 Downstream 41bp
chr11 3829808 3829808 1 + C G rs191164612 3829804 + 3829784 3829824 41 CCCGCCGTTCGCGCTCTGACCAGCCCGCAGAGCCAGCCCCC CCCGCCGTTCGCGCTCTGACCAGCGCGCAGAGCCAGCCCCC < 41bp 0.672036918953007 0.872859658608771 0.4963056 0.82139593 prediction 0.401645479311529 Functional Gain - PGAP2 ENSG00000148985 UTR5 Human protein_coding chr11:3829804 chr11:3829808 . . 0 25 hm5C_associated_SNPs_129433 0 0 1 0 1 PGAP2 chr11:3829881 5'GT 3829881 Upstream 74bp
chr16 29810040 29810040 1 + T G UCEC 29810038 + 29810018 29810058 41 CCATGGGCCCTTTCTGTCACCATGTCTTACCTAGAGATCTA CCATGGGCCCTTTCTGTCACCAGGTCTTACCTAGAGATCTA < 41bp 0.335470542001865 0.70081790242449 0.45393568 0.87889695 prediction 0.40163580484898 Functional Gain - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29810038 chr16:29810040 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_129434 0 0 1 0 1 KIF22 chr16:29810068 5'GT 29810068 Upstream 29bp
chr16 1551467 1551467 1 + C T COAD 1551466 + 1551446 1551486 41 AGCTGCTGGCCTTGGCCTCCCCCCAGCCTGCGGGTGACGGC AGCTGCTGGCCTTGGCCTCCCTCCAGCCTGCGGGTGACGGC < 41bp 0.657685611628509 0.858496146854712 0.16079193 0.92005885 prediction 0.401621070452406 Functional Gain - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1551466 chr16:1551467 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_129436 0 0 1 0 2 TELO2 chr16:1551421 3'AG 1551421 Downstream 47bp
chr16 1551467 1551467 1 + C T COAD 1551466 + 1551446 1551486 41 AGCTGCTGGCCTTGGCCTCCCCCCAGCCTGCGGGTGACGGC AGCTGCTGGCCTTGGCCTCCCTCCAGCCTGCGGGTGACGGC < 41bp 0.657685611628509 0.858496146854712 0.16079193 0.92005885 prediction 0.401621070452406 Functional Gain - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1551466 chr16:1551467 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_129436 0 0 1 0 2 TELO2 chr16:1551500 5'GT 1551500 Upstream 34bp
chr14 90730042 90730042 1 + C T SKCM 90730041 + 90730021 90730061 41 GTGGATGATCTGAGGGGGACCCCGATGTCAGTAGGAACCTT GTGGATGATCTGAGGGGGACCTCGATGTCAGTAGGAACCTT < 41bp 0.643059576780825 0.843867554390143 0.37516785 0.8723561 prediction 0.401615955218635 Functional Gain - PSMC1 ENSG00000100764 CDS Human protein_coding chr14:90730041 chr14:90730042 nonsynonymous SNV 0.915 5 22 hm5C_associated_SNPs_129437 0 0 0 0 1 PSMC1 chr14:90730006 3'AG 90730006 Downstream 37bp
chr14 104194169 104194169 1 + C T LUAD 104194168 + 104194148 104194188 41 GCGCATGTGCTTTGTGGACCCCGTGCGGCAGTGCGCGGAGT GCGCATGTGCTTTGTGGACCCTGTGCGGCAGTGCGCGGAGT < 41bp 0.560416401911062 0.76122132040598 0.13175926 0.12043089 prediction 0.401609836989836 Functional Gain - ZFYVE21 ENSG00000100711 CDS Human protein_coding chr14:104194168 chr14:104194169 synonymous SNV . 0 22 hm5C_associated_SNPs_129438 0 0 1 0 2 ZFYVE21 chr14:104194083 3'AG 104194083 Downstream 87bp
chr14 104194169 104194169 1 + C T LUAD 104194168 + 104194148 104194188 41 GCGCATGTGCTTTGTGGACCCCGTGCGGCAGTGCGCGGAGT GCGCATGTGCTTTGTGGACCCTGTGCGGCAGTGCGCGGAGT < 41bp 0.560416401911062 0.76122132040598 0.13175926 0.12043089 prediction 0.401609836989836 Functional Gain - ZFYVE21 ENSG00000100711 CDS Human protein_coding chr14:104194168 chr14:104194169 synonymous SNV . 0 22 hm5C_associated_SNPs_129438 0 0 1 0 2 ZFYVE21 chr14:104194251 5'GT 104194251 Upstream 83bp
chr19 41515932 41515932 1 + C T rs190463703 41515931 + 41515911 41515951 41 GCACACAGTGAATTCAGCCACCAGAACCTCAACCTCAACAC GCACACAGTGAATTCAGCCACTAGAACCTCAACCTCAACAC < 41bp 0.640081182564261 0.840883306509809 0.15419585 0.15988898 prediction 0.401604247891096 Functional Gain - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41515931 chr19:41515932 stopgain 0.000 0 22 hm5C_associated_SNPs_129440 0 0 0 0 1 CYP2B6 chr19:41515899 3'AG 41515899 Downstream 34bp
chr8 99161052 99161052 1 + C T UCEC 99161051 + 99161031 99161071 41 CTTCCACTTTAGGATTTAAACCGGATGAGGAGTGAATTGCT CTTCCACTTTAGGATTTAAACTGGATGAGGAGTGAATTGCT < 41bp 0.642221973321933 0.843023816757794 0.4153821 0.29062155 prediction 0.401603686871724 Functional Gain - POP1 ENSG00000104356 CDS Human protein_coding chr8:99161051 chr8:99161052 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_129441 0 0 1 0 1 POP1 chr8:99161043 3'AG 99161043 Downstream 10bp
chr11 22398134 22398134 1 + T C UCEC 22398131 + 22398111 22398151 41 GATATCGCTCCAAGATATGCCAGTATCTTAATGGGCATTTC GATATCGCTCCAAGATATGCCAGCATCTTAATGGGCATTTC < 41bp 0.474268170915218 0.700798634997506 0.14854568 0.14473379 prediction 0.401597269995013 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22398131 chr11:22398134 synonymous SNV . 0 24 hm5C_associated_SNPs_129444 0 0 0 0 2 SLC17A6 chr11:22398091 3'AG 22398091 Downstream 44bp
chr11 22398134 22398134 1 + T C UCEC 22398131 + 22398111 22398151 41 GATATCGCTCCAAGATATGCCAGTATCTTAATGGGCATTTC GATATCGCTCCAAGATATGCCAGCATCTTAATGGGCATTTC < 41bp 0.474268170915218 0.700798634997506 0.14854568 0.14473379 prediction 0.401597269995013 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22398131 chr11:22398134 synonymous SNV . 0 24 hm5C_associated_SNPs_129444 0 0 0 0 2 SLC17A6 chr11:22398218 5'GT 22398218 Upstream 85bp
chr10 73115896 73115896 1 + C T UCEC 73115895 + 73115875 73115915 41 ATTGGTGGACTTGGCTGCATCCAGTGATGTGAGGAACAGCG ATTGGTGGACTTGGCTGCATCTAGTGATGTGAGGAACAGCG < 41bp 0.445217159211981 0.700795462590216 0.7327401 0.5918353 prediction 0.401590925180432 Functional Gain - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73115895 chr10:73115896 synonymous SNV . 0 22 hm5C_associated_SNPs_129448 0 0 0 0 1 SLC29A3 chr10:73115838 3'AG 73115838 Downstream 59bp
chr10 6262697 6262697 1 + C T UCEC 6262696 + 6262676 6262716 41 GTGCAGGACCACATCCAGAGCCGCATCGTGTACTACCTGAT GTGCAGGACCACATCCAGAGCTGCATCGTGTACTACCTGAT < 41bp 0.429275633873863 0.700795037121518 0.17099383 0.17465806 prediction 0.401590074243037 Functional Gain - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6262696 chr10:6262697 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_129449 0 0 1 2 1 PFKFB3 chr10:6262621 3'AG 6262621 Downstream 77bp
chr20 18549899 18549899 1 + A G UCEC 18549896 + 18549876 18549916 41 AAAGTAGACCAAAAGGATGGCTCAGCAAGTGAAGTACCCAG AAAGTAGACCAAAAGGATGGCTCGGCAAGTGAAGTACCCAG < 41bp 0.479680169411503 0.70079423417936 0.019975692 0.015260011 prediction 0.401588468358721 Functional Gain - SMIM26 ENSG00000232388 ncRNA_exonic Human protein_coding chr20:18549896 chr20:18549899 . . 0 24 hm5C_associated_SNPs_129451 0 0 1 0 2 SMIM26 chr20:18549880 3'AG 18549880 Downstream 20bp
chr20 18549899 18549899 1 + A G UCEC 18549896 + 18549876 18549916 41 AAAGTAGACCAAAAGGATGGCTCAGCAAGTGAAGTACCCAG AAAGTAGACCAAAAGGATGGCTCGGCAAGTGAAGTACCCAG < 41bp 0.479680169411503 0.70079423417936 0.019975692 0.015260011 prediction 0.401588468358721 Functional Gain - SMIM26 ENSG00000232388 ncRNA_exonic Human protein_coding chr20:18549896 chr20:18549899 . . 0 24 hm5C_associated_SNPs_129451 0 0 1 0 2 SMIM26 chr20:18549883 3'AG 18549883 Downstream 17bp
chr4 88902887 88902887 1 + A G GBM 88902884 + 88902864 88902904 41 ACAGTAGACACATATGATGGCCGAGGTGATAGTGTGGTTTA ACAGTAGACACATATGATGGCCGGGGTGATAGTGTGGTTTA < 41bp 0.478274710236002 0.700789312437214 0.23565766 0.70055586 prediction 0.401578624874428 Functional Gain - SPP1 ENSG00000118785 CDS Human protein_coding chr4:88902884 chr4:88902887 synonymous SNV . 0 24 hm5C_associated_SNPs_129452 0 0 1 0 1 SPP1 chr4:88902950 5'GT 88902950 Upstream 64bp
chr10 5960440 5960440 1 + A G LIHC 5960437 + 5960417 5960457 41 CACCCACGTCTTCTATCTCACGCAGGTAAGTGCGCACTCTG CACCCACGTCTTCTATCTCACGCGGGTAAGTGCGCACTCTG < 41bp 0.626792627200662 0.827581110227223 0.6698247 0.9085748 prediction 0.401576966053121 Functional Gain - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5960437 chr10:5960440 nonsynonymous SNV 0.932 3 24 hm5C_associated_SNPs_129453 0 0 1 0 1 FBXO18 chr10:5960441 5'GT 5960441 Upstream 2bp
chr11 33210967 33210967 1 + T C rs191567331 33210965 + 33210945 33210985 41 TGGTCTCGATCTCCTGACCTCATGATCTGCCCGCCTCAGCC TGGTCTCGATCTCCTGACCTCACGATCTGCCCGCCTCAGCC < 41bp 0.612425382464344 0.813213433884929 0.12925822 0.17710128 prediction 0.40157610284117 Functional Gain - CSTF3-AS1 ENSG00000247151 ncRNA_exonic Human antisense chr11:33210965 chr11:33210967 . . 0 23 hm5C_associated_SNPs_129454 0 0 0 0 1 CSTF3-AS1 chr11:33210914 3'AG 33210914 Downstream 54bp
chr7 127338982 127338982 1 + C A STAD 127338978 + 127338958 127338998 41 CTGGTTGCAGAGGGCTTAGCCACCCGGAGAGAAGGCATGAG CTGGTTGCAGAGGGCTTAGCCACCAGGAGAGAAGGCATGAG < 41bp 0.286880861487107 0.700787272336301 0.40354687 0.46364716 prediction 0.401574544672602 Functional Gain - SND1 ENSG00000197157 CDS Human protein_coding chr7:127338978 chr7:127338982 synonymous SNV . 0 25 hm5C_associated_SNPs_129455 0 0 1 0 2 SND1 chr7:127338929 3'AG 127338929 Downstream 54bp
chr7 127338982 127338982 1 + C A STAD 127338978 + 127338958 127338998 41 CTGGTTGCAGAGGGCTTAGCCACCCGGAGAGAAGGCATGAG CTGGTTGCAGAGGGCTTAGCCACCAGGAGAGAAGGCATGAG < 41bp 0.286880861487107 0.700787272336301 0.40354687 0.46364716 prediction 0.401574544672602 Functional Gain - SND1 ENSG00000197157 CDS Human protein_coding chr7:127338978 chr7:127338982 synonymous SNV . 0 25 hm5C_associated_SNPs_129455 0 0 1 0 2 SND1 chr7:127339007 5'GT 127339007 Upstream 26bp
chr11 60777255 60777255 1 + T C COAD 60777252 + 60777232 60777272 41 GGCAGGATGTACTACTCATGCAATGGGGAGGAGCTCACCCT GGCAGGATGTACTACTCATGCAACGGGGAGGAGCTCACCCT < 41bp 0.496144063837744 0.700782524781381 0.26905128 0.26932105 prediction 0.401565049562762 Functional Gain - CD6 ENSG00000013725 CDS Human protein_coding chr11:60777252 chr11:60777255 synonymous SNV . 0 24 hm5C_associated_SNPs_129456 0 0 0 0 1 CD6 chr11:60777346 5'GT 60777346 Upstream 92bp
chr15 71507457 71507457 1 + C T rs150014427 71507456 + 71507436 71507476 41 AGTGTGGGGCGCCTGGGGCCCCTGGTCGGCCTGCTCGCGTA AGTGTGGGGCGCCTGGGGCCCTTGGTCGGCCTGCTCGCGTA < 41bp 0.506786300533765 0.707568381166918 0.28279144 0.3922862 prediction 0.401564161266306 Functional Gain - THSD4 ENSG00000187720 CDS Human protein_coding chr15:71507456 chr15:71507457 synonymous SNV . 0 22 hm5C_associated_SNPs_129457 0 0 0 0 1 THSD4 chr15:71507374 3'AG 71507374 Downstream 84bp
chr12 49312540 49312540 1 + C T rs78877829 49312539 + 49312519 49312559 41 GAAGATGAGAACCGGTATATCCGTAATGACAAGGAATTGGT GAAGATGAGAACCGGTATATCTGTAATGACAAGGAATTGGT < 41bp 0.436484197569834 0.700781402873785 0.027687818 0.04531908 prediction 0.40156280574757 Functional Gain - CCDC65 ENSG00000139537 CDS Human protein_coding chr12:49312539 chr12:49312540 nonsynonymous SNV 0.874 3 22 hm5C_associated_SNPs_129458 2 0 0 0 1 CCDC65 chr12:49312468 3'AG 49312468 Downstream 73bp
chr17 59557319 59557319 1 + C T rs34495182 59557318 + 59557298 59557338 41 TGACAGTGACCTGCGTGTGGCCCGACTGCAGAGGTGGGGCT TGACAGTGACCTGCGTGTGGCTCGACTGCAGAGGTGGGGCT < 41bp 0.643533785219665 0.844306985121305 0.12451619 0.30575514 prediction 0.40154639980328 Functional Gain - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59557318 chr17:59557319 synonymous SNV . 0 22 hm5C_associated_SNPs_129461 0 0 0 0 2 TBX4 chr17:59557242 3'AG 59557242 Downstream 78bp
chr17 59557319 59557319 1 + C T rs34495182 59557318 + 59557298 59557338 41 TGACAGTGACCTGCGTGTGGCCCGACTGCAGAGGTGGGGCT TGACAGTGACCTGCGTGTGGCTCGACTGCAGAGGTGGGGCT < 41bp 0.643533785219665 0.844306985121305 0.12451619 0.30575514 prediction 0.40154639980328 Functional Gain - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59557318 chr17:59557319 synonymous SNV . 0 22 hm5C_associated_SNPs_129461 0 0 0 0 2 TBX4 chr17:59557330 5'GT 59557330 Upstream 12bp
chr8 95835714 95835714 1 + C G SKCM 95835713 + 95835693 95835733 41 ACCTCCAGCCGGCCCTGCACCCCGCCGCAGACCTGCTGGTT ACCTCCAGCCGGCCCTGCACCGCGCCGCAGACCTGCTGGTT < 41bp 0.389009928724872 0.700771375171673 0.2736075 0.41130966 prediction 0.401542750343347 Functional Gain - INTS8 ENSG00000164941 CDS Human protein_coding chr8:95835713 chr8:95835714 nonsynonymous SNV 0.981 1 22 hm5C_associated_SNPs_129462 0 0 1 0 1 INTS8 chr8:95835789 5'GT 95835789 Upstream 76bp
chr16 77850881 77850881 1 + C A LUSC 77850877 + 77850857 77850897 41 TATTGACAACCCTCCCAAGACTCCCCTGGTGCCAGGATTTG TATTGACAACCCTCCCAAGACTCCACTGGTGCCAGGATTTG < 41bp 0.252495962573057 0.700769873963604 0.030789852 0.9141215 prediction 0.401539747927208 Functional Gain - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77850877 chr16:77850881 synonymous SNV . 0 25 hm5C_associated_SNPs_129463 0 0 0 0 2 VAT1L chr16:77850818 3'AG 77850818 Downstream 64bp
chr16 77850881 77850881 1 + C A LUSC 77850877 + 77850857 77850897 41 TATTGACAACCCTCCCAAGACTCCCCTGGTGCCAGGATTTG TATTGACAACCCTCCCAAGACTCCACTGGTGCCAGGATTTG < 41bp 0.252495962573057 0.700769873963604 0.030789852 0.9141215 prediction 0.401539747927208 Functional Gain - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77850877 chr16:77850881 synonymous SNV . 0 25 hm5C_associated_SNPs_129463 0 0 0 0 2 VAT1L chr16:77850947 5'GT 77850947 Upstream 67bp
chr14 21359883 21359883 1 + T G UCEC 21359879 + 21359859 21359899 41 TGTTCACTTCCCAAATTTGTCTGCTTCTTCTGTTGGGGCTT TGTTCACTTCCCAAATTTGTCTGCGTCTTCTGTTGGGGCTT < 41bp 0.524485111096737 0.725248139634378 0.15861568 0.18238252 prediction 0.401526057075283 Functional Gain - RNASE3 ENSG00000169397 CDS Human protein_coding chr14:21359879 chr14:21359883 nonsynonymous SNV 0.479 3 25 hm5C_associated_SNPs_129470 0 0 0 0 1 RNASE3 chr14:21359841 3'AG 21359841 Downstream 43bp
chr19 54695980 54695980 1 + C T SKCM 54695979 + 54695959 54695999 41 CCCACCAGGCCCCTCGTCTTCCCAAGCAGGACCCTCAAATG CCCACCAGGCCCCTCGTCTTCTCAAGCAGGACCCTCAAATG < 41bp 0.651940806532876 0.852691247936981 0.12827978 0.10730228 prediction 0.40150088280821 Functional Gain - TSEN34 ENSG00000170892 CDS Human protein_coding chr19:54695979 chr19:54695980 synonymous SNV . 0 22 hm5C_associated_SNPs_129476 0 0 1 0 1 TSEN34 chr19:54695967 3'AG 54695967 Downstream 14bp
chr20 30381782 30381782 1 + T C UCEC 30381780 + 30381760 30381800 41 TTGATTCTCGAGACAAAGAACGTCAGTTACAGAAGGAGAAG TTGATTCTCGAGACAAAGAACGCCAGTTACAGAAGGAGAAG < 41bp 0.396048184390772 0.700745020286879 0.35257325 0.70610416 prediction 0.401490040573759 Functional Gain - TPX2 ENSG00000088325 CDS Human protein_coding chr20:30381780 chr20:30381782 synonymous SNV . 0 23 hm5C_associated_SNPs_129478 0 0 1 0 1 TPX2 chr20:30381827 5'GT 30381827 Upstream 46bp
chr19 4651891 4651891 1 + T G LUSC 4651887 + 4651867 4651907 41 TGTCCCCCGCAGGCCATGGACACCTTCAGCACCAAGAGCCT TGTCCCCCGCAGGCCATGGACACCGTCAGCACCAAGAGCCT < 41bp 0.53726923118114 0.738012298049826 0.050873935 0.11716482 prediction 0.401486133737371 Functional Gain - TNFAIP8L1 ENSG00000185361 CDS Human protein_coding chr19:4651887 chr19:4651891 nonsynonymous SNV 0.970 3 25 hm5C_associated_SNPs_129479 0 0 1 0 1 TNFAIP8L1 chr19:4651879 3'AG 4651879 Downstream 13bp
chr6 132047328 132047328 1 + A G COAD 132047325 + 132047305 132047345 41 ATGCCCATGTGGAGTTCATACACAGTCCCCCAGTTGGTAAG ATGCCCATGTGGAGTTCATACACGGTCCCCCAGTTGGTAAG < 41bp 0.62126293279395 0.822005500432825 0.053397983 0.2517013 prediction 0.401485135277751 Functional Gain - ENPP3 ENSG00000154269 CDS Human protein_coding chr6:132047325 chr6:132047328 synonymous SNV . 0 24 hm5C_associated_SNPs_129480 0 0 1 1 1 ENPP3 chr6:132047340 5'GT 132047340 Upstream 13bp
chr16 5128839 5128839 1 + T C COAD 5128836 + 5128816 5128856 41 AGCGGGCTGGTGACGCGTCTCCGTGAGCGGCCAGCCCTGCT AGCGGGCTGGTGACGCGTCTCCGCGAGCGGCCAGCCCTGCT < 41bp 0.557488575132614 0.758219626002147 0.44306532 0.6004998 prediction 0.401462101739067 Functional Gain - ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128836 chr16:5128839 synonymous SNV . 0 24 hm5C_associated_SNPs_129484 0 0 1 0 2 ALG1 chr16:5128758 3'AG 5128758 Downstream 82bp
chr16 5128839 5128839 1 + T C COAD 5128836 + 5128816 5128856 41 AGCGGGCTGGTGACGCGTCTCCGTGAGCGGCCAGCCCTGCT AGCGGGCTGGTGACGCGTCTCCGCGAGCGGCCAGCCCTGCT < 41bp 0.557488575132614 0.758219626002147 0.44306532 0.6004998 prediction 0.401462101739067 Functional Gain - ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128836 chr16:5128839 synonymous SNV . 0 24 hm5C_associated_SNPs_129484 0 0 1 0 2 ALG1 chr16:5128879 5'GT 5128879 Upstream 41bp
chr14 24113673 24113673 1 + T C COAD 24113670 + 24113650 24113690 41 GCTGCTGGGTCTCACTAGAACACTGGCATTGGAGCTGGCCC GCTGCTGGGTCTCACTAGAACACCGGCATTGGAGCTGGCCC < 41bp 0.577154892899184 0.777876871274558 0.0466139 0.039683104 prediction 0.401443956750747 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113670 chr14:24113673 nonsynonymous SNV 0.003 4 24 hm5C_associated_SNPs_129487 0 0 1 2 3 DHRS2 chr14:24113618 3'AG 24113618 Downstream 56bp
chr14 24113673 24113673 1 + T C COAD 24113670 + 24113650 24113690 41 GCTGCTGGGTCTCACTAGAACACTGGCATTGGAGCTGGCCC GCTGCTGGGTCTCACTAGAACACCGGCATTGGAGCTGGCCC < 41bp 0.577154892899184 0.777876871274558 0.0466139 0.039683104 prediction 0.401443956750747 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113670 chr14:24113673 nonsynonymous SNV 0.003 4 24 hm5C_associated_SNPs_129487 0 0 1 2 3 DHRS2 chr14:24113752 5'GT 24113752 Upstream 80bp
chr14 24113673 24113673 1 + T C COAD 24113670 + 24113650 24113690 41 GCTGCTGGGTCTCACTAGAACACTGGCATTGGAGCTGGCCC GCTGCTGGGTCTCACTAGAACACCGGCATTGGAGCTGGCCC < 41bp 0.577154892899184 0.777876871274558 0.0466139 0.039683104 prediction 0.401443956750747 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113670 chr14:24113673 nonsynonymous SNV 0.003 4 24 hm5C_associated_SNPs_129487 0 0 1 2 3 DHRS2 chr14:24113763 5'GT 24113763 Upstream 91bp
chr9 96259756 96259756 1 + C T READ 96259755 + 96259735 96259775 41 TTACGTTTGTTTTCTCAGGTCCGGGCCCACCAGCTGGTCTT TTACGTTTGTTTTCTCAGGTCTGGGCCCACCAGCTGGTCTT < 41bp 0.455239808435431 0.700721751391058 0.56704116 0.55915403 prediction 0.401443502782116 Functional Gain - FAM120A ENSG00000048828 CDS Human protein_coding chr9:96259755 chr9:96259756 nonsynonymous SNV 0.985 3 22 hm5C_associated_SNPs_129488 0 0 1 0 1 FAM120A chr9:96259753 3'AG 96259753 Downstream 4bp
chr16 90021615 90021615 1 + C T STAD 90021614 + 90021594 90021634 41 CCCCCTGGGGAGCCGGAATTCCGCTGCCCTGAACGCGTGAT CCCCCTGGGGAGCCGGAATTCTGCTGCCCTGAACGCGTGAT < 41bp 0.630371429210168 0.831084847590419 0.14642933 0.10566291 prediction 0.401426836760502 Functional Gain - DEF8 ENSG00000140995 CDS Human protein_coding chr16:90021614 chr16:90021615 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_129494 0 0 1 0 2 DEF8 chr16:90021577 3'AG 90021577 Downstream 39bp
chr16 90021615 90021615 1 + C T STAD 90021614 + 90021594 90021634 41 CCCCCTGGGGAGCCGGAATTCCGCTGCCCTGAACGCGTGAT CCCCCTGGGGAGCCGGAATTCTGCTGCCCTGAACGCGTGAT < 41bp 0.630371429210168 0.831084847590419 0.14642933 0.10566291 prediction 0.401426836760502 Functional Gain - DEF8 ENSG00000140995 CDS Human protein_coding chr16:90021614 chr16:90021615 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_129494 0 0 1 0 2 DEF8 chr16:90021674 5'GT 90021674 Upstream 60bp
chr21 37442686 37442686 1 - G A rs191556963 37442687 - 37442667 37442707 41 CATACCCTTGAAGGCGATGCCCGCGTTGTTGACCAGCACGT CATACCCTTGAAGGCGATGCCTGCGTTGTTGACCAGCACGT < 41bp 0.462131963246352 0.70071289044971 0.0360685 0.017415345 prediction 0.401425780899419 Functional Gain - CBR1 ENSG00000159228 CDS Human sense_intronic chr21:37442687 chr21:37442686 synonymous SNV . 0 22 hm5C_associated_SNPs_129495 0 0 1 0 1 LOC100133286 chr21:37442783 3'AG 37442783 Downstream 98bp
chr1 248262757 248262757 1 + T A LUAD 248262755 + 248262735 248262775 41 AATCAAACTGGAATATTTCTCTTGTGCCTTATCATCCTCAT AATCAAACTGGAATATTTCTCTAGTGCCTTATCATCCTCAT < 41bp 0.5461606323227 0.746857526536547 0.11099863 0.24916503 prediction 0.401393788427693 Functional Gain - OR2L13 ENSG00000196071 CDS Human protein_coding chr1:248262755 chr1:248262757 stopgain 0.001 0 23 hm5C_associated_SNPs_129502 0 0 0 0 1 OR2L13 chr1:248262660 3'AG 248262660 Downstream 98bp
chr17 74382123 74382123 1 + C G UCEC 74382122 + 74382102 74382142 41 GCGTGCTGGTGCTGCTGAACCCGCGCGGCGGCAAGGGCAAG GCGTGCTGGTGCTGCTGAACCGGCGCGGCGGCAAGGGCAAG < 41bp 0.58580968288006 0.7865060778366 0.5437839 0.85264033 prediction 0.40139278991308 Functional Gain - SPHK1 ENSG00000176170 CDS Human protein_coding chr17:74382122 chr17:74382123 nonsynonymous SNV 0.642 4 22 hm5C_associated_SNPs_129503 0 0 1 0 3 SPHK1 chr17:74382024 3'AG 74382024 Downstream 100bp
chr17 74382123 74382123 1 + C G UCEC 74382122 + 74382102 74382142 41 GCGTGCTGGTGCTGCTGAACCCGCGCGGCGGCAAGGGCAAG GCGTGCTGGTGCTGCTGAACCGGCGCGGCGGCAAGGGCAAG < 41bp 0.58580968288006 0.7865060778366 0.5437839 0.85264033 prediction 0.40139278991308 Functional Gain - SPHK1 ENSG00000176170 CDS Human protein_coding chr17:74382122 chr17:74382123 nonsynonymous SNV 0.642 4 22 hm5C_associated_SNPs_129503 0 0 1 0 3 SPHK1 chr17:74382066 3'AG 74382066 Downstream 58bp
chr17 74382123 74382123 1 + C G UCEC 74382122 + 74382102 74382142 41 GCGTGCTGGTGCTGCTGAACCCGCGCGGCGGCAAGGGCAAG GCGTGCTGGTGCTGCTGAACCGGCGCGGCGGCAAGGGCAAG < 41bp 0.58580968288006 0.7865060778366 0.5437839 0.85264033 prediction 0.40139278991308 Functional Gain - SPHK1 ENSG00000176170 CDS Human protein_coding chr17:74382122 chr17:74382123 nonsynonymous SNV 0.642 4 22 hm5C_associated_SNPs_129503 0 0 1 0 3 SPHK1 chr17:74382218 5'GT 74382218 Upstream 96bp
chr22 42666026 42666026 1 + C T rs187166731 42666025 + 42666005 42666045 41 GCACCCAAGGCCTCGCGCGACCAGCAGGTAGACCTTCCCTC GCACCCAAGGCCTCGCGCGACTAGCAGGTAGACCTTCCCTC < 41bp 0.519086392648224 0.719782704881536 0.34788173 0.09727156 prediction 0.401392624466625 Functional Gain - OGFRP1 ENSG00000182057 ncRNA_exonic Human lincRNA chr22:42666025 chr22:42666026 . . 0 22 hm5C_associated_SNPs_129504 0 1 0 1 1 OGFRP1 chr22:42666031 5'GT 42666031 Upstream 6bp
chr19 55294471 55294471 1 + A G rs371209191 55294468 + 55294448 55294488 41 CTTCATCGCTGGTGCTCCAACAAAAAAAGTAAGTCTTACGA CTTCATCGCTGGTGCTCCAACAAGAAAAGTAAGTCTTACGA < 41bp 0.457873296431753 0.700694017938202 0.4133618 0.8104416 prediction 0.401388035876404 Functional Gain - KIR2DL1 ENSG00000125498;ENSG00000243772 CDS Human other chr19:55294468 chr19:55294471 synonymous SNV . 0 24 hm5C_associated_SNPs_129506 0 0 0 0 2 KIR2DL1 chr19:55294374 3'AG 55294374 Downstream 98bp
chr19 55294471 55294471 1 + A G rs371209191 55294468 + 55294448 55294488 41 CTTCATCGCTGGTGCTCCAACAAAAAAAGTAAGTCTTACGA CTTCATCGCTGGTGCTCCAACAAGAAAAGTAAGTCTTACGA < 41bp 0.457873296431753 0.700694017938202 0.4133618 0.8104416 prediction 0.401388035876404 Functional Gain - KIR2DL1 ENSG00000125498;ENSG00000243772 CDS Human other chr19:55294468 chr19:55294471 synonymous SNV . 0 24 hm5C_associated_SNPs_129506 0 0 0 0 2 KIR2DL1 chr19:55294475 5'GT 55294475 Upstream 5bp
chr21 47549137 47549137 1 + C T STAD 47549136 + 47549116 47549156 41 CGTGGCCTGGCGGCGAGCCCCCGGTCACCTTCCTCCGCACG CGTGGCCTGGCGGCGAGCCCCTGGTCACCTTCCTCCGCACG < 41bp 0.580637832122055 0.78133157772336 0.49458945 0.2746769 prediction 0.401387491202611 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47549136 chr21:47549137 nonsynonymous SNV 0.992 1 22 hm5C_associated_SNPs_129507 0 0 0 0 1 COL6A2 chr21:47549110 3'AG 47549110 Downstream 28bp
chr19 41884359 41884359 1 + T C STAD 41884356 + 41884336 41884376 41 CCGAGTCCCTGAGGGGTTTGCAGTTCCTGTCACCGCCTCTT CCGAGTCCCTGAGGGGTTTGCAGCTCCTGTCACCGCCTCTT < 41bp 0.52069353873348 0.721385529555522 0.21791151 0.29215533 prediction 0.401383981644083 Functional Gain - TMEM91 ENSG00000142046;ENSG00000248098;ENSG00000255730 CDS Human other chr19:41884356 chr19:41884359 nonsynonymous SNV 0.415 1 24 hm5C_associated_SNPs_129508 0 0 1 0 1 TMEM91 chr19:41884424 5'GT 41884424 Upstream 66bp
chr5 174937120 174937120 1 + C T LUAD 174937119 + 174937099 174937139 41 GCCTCTGTTTTAGGACTACGCCGGCTGTGCTGTTCTGGCAG GCCTCTGTTTTAGGACTACGCTGGCTGTGCTGTTCTGGCAG < 41bp 0.603653327280817 0.804343950379995 0.42342666 0.35607815 prediction 0.401381246198358 Functional Gain - SFXN1 ENSG00000164466 CDS Human protein_coding chr5:174937119 chr5:174937120 nonsynonymous SNV 0.957 3 22 hm5C_associated_SNPs_129509 0 0 1 0 2 SFXN1 chr5:174937112 3'AG 174937112 Downstream 9bp
chr5 174937120 174937120 1 + C T LUAD 174937119 + 174937099 174937139 41 GCCTCTGTTTTAGGACTACGCCGGCTGTGCTGTTCTGGCAG GCCTCTGTTTTAGGACTACGCTGGCTGTGCTGTTCTGGCAG < 41bp 0.603653327280817 0.804343950379995 0.42342666 0.35607815 prediction 0.401381246198358 Functional Gain - SFXN1 ENSG00000164466 CDS Human protein_coding chr5:174937119 chr5:174937120 nonsynonymous SNV 0.957 3 22 hm5C_associated_SNPs_129509 0 0 1 0 2 SFXN1 chr5:174937210 5'GT 174937210 Upstream 91bp
chr2 118582157 118582157 1 + C A UCEC 118582153 + 118582133 118582173 41 TATCTGTTTCAGCACGTAGACAGACTATGCTCTTTTCTGCC TATCTGTTTCAGCACGTAGACAGAATATGCTCTTTTCTGCC < 41bp 0.305376602413963 0.700683808934917 0.21804729 0.13421884 prediction 0.401367617869833 Functional Gain - DDX18 ENSG00000088205 CDS Human protein_coding chr2:118582153 chr2:118582157 nonsynonymous SNV 0.935 4 25 hm5C_associated_SNPs_129510 0 0 1 0 1 DDX18 chr2:118582145 3'AG 118582145 Downstream 13bp
chr11 65631344 65631344 1 + T G STAD 65631342 + 65631322 65631362 41 CTGGATGACCTTTGCAGCAGCATCATCGACGGCCGCTTCCG CTGGATGACCTTTGCAGCAGCAGCATCGACGGCCGCTTCCG < 41bp 0.341266413750896 0.700679138783354 0.12995344 0.53196955 prediction 0.401358277566708 Functional Gain - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65631342 chr11:65631344 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_129511 0 0 1 0 2 MUS81 chr11:65631275 3'AG 65631275 Downstream 70bp
chr11 65631344 65631344 1 + T G STAD 65631342 + 65631322 65631362 41 CTGGATGACCTTTGCAGCAGCATCATCGACGGCCGCTTCCG CTGGATGACCTTTGCAGCAGCAGCATCGACGGCCGCTTCCG < 41bp 0.341266413750896 0.700679138783354 0.12995344 0.53196955 prediction 0.401358277566708 Functional Gain - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65631342 chr11:65631344 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_129511 0 0 1 0 2 MUS81 chr11:65631372 5'GT 65631372 Upstream 29bp
chr6 43268991 43268991 1 + C A LUAD 43268990 + 43268970 43269010 41 GTGTGTGAGGACAGCTTCAGCCAGGAGGTGAGGGTGAACGT GTGTGTGAGGACAGCTTCAGCAAGGAGGTGAGGGTGAACGT < 41bp 0.652122384826044 0.852796020198218 0.4658023 0.40424114 prediction 0.401347270744347 Functional Gain - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43268990 chr6:43268991 nonsynonymous SNV 0.991 0 22 hm5C_associated_SNPs_129513 0 0 0 0 1 SLC22A7 chr6:43268996 5'GT 43268996 Upstream 6bp
chr19 55593240 55593240 1 + C A UCEC 55593239 + 55593219 55593259 41 CTGGAGCACCGGGAACGCGGCCGCAGGAGCCGGCGCCGGGC CTGGAGCACCGGGAACGCGGCAGCAGGAGCCGGCGCCGGGC < 41bp 0.644421088296272 0.845093245965966 0.51822215 0.759169 prediction 0.401344315339388 Functional Gain - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55593239 chr19:55593240 nonsynonymous SNV 0.662 3 22 hm5C_associated_SNPs_129515 0 0 0 0 2 EPS8L1 chr19:55593141 3'AG 55593141 Downstream 100bp
chr19 55593240 55593240 1 + C A UCEC 55593239 + 55593219 55593259 41 CTGGAGCACCGGGAACGCGGCCGCAGGAGCCGGCGCCGGGC CTGGAGCACCGGGAACGCGGCAGCAGGAGCCGGCGCCGGGC < 41bp 0.644421088296272 0.845093245965966 0.51822215 0.759169 prediction 0.401344315339388 Functional Gain - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55593239 chr19:55593240 nonsynonymous SNV 0.662 3 22 hm5C_associated_SNPs_129515 0 0 0 0 2 EPS8L1 chr19:55593267 5'GT 55593267 Upstream 28bp
chr7 100369601 100369601 1 + C T SKCM 100369600 + 100369580 100369620 41 GCCTACGCGTCCCTGTGTGCCCAGGCTGGCCAGGCCCCTGC GCCTACGCGTCCCTGTGTGCCTAGGCTGGCCAGGCCCCTGC < 41bp 0.497791141705829 0.700671570227098 0.14770353 0.17470297 prediction 0.401343140454196 Functional Gain - ZAN ENSG00000146839 CDS Human protein_coding chr7:100369600 chr7:100369601 stopgain 0.022 0 22 hm5C_associated_SNPs_129516 0 0 0 0 1 ZAN chr7:100369643 5'GT 100369643 Upstream 43bp
chr16 30198195 30198195 1 + T C LIHC 30198193 + 30198173 30198213 41 CTGCGGGAGCCCGTCGTCACCCTGGAGGGCCACACCAAGCG CTGCGGGAGCCCGTCGTCACCCCGGAGGGCCACACCAAGCG < 41bp 0.560282254480268 0.76094732608219 0.06477633 0.177192 prediction 0.401330143203845 Functional Gain - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30198193 chr16:30198195 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_129518 0 0 0 0 2 CORO1A chr16:30198137 3'AG 30198137 Downstream 59bp
chr16 30198195 30198195 1 + T C LIHC 30198193 + 30198173 30198213 41 CTGCGGGAGCCCGTCGTCACCCTGGAGGGCCACACCAAGCG CTGCGGGAGCCCGTCGTCACCCCGGAGGGCCACACCAAGCG < 41bp 0.560282254480268 0.76094732608219 0.06477633 0.177192 prediction 0.401330143203845 Functional Gain - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30198193 chr16:30198195 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_129518 0 0 0 0 2 CORO1A chr16:30198266 5'GT 30198266 Upstream 72bp
chr1 23189627 23189627 1 + T C SKCM 23189624 + 23189604 23189644 41 ACTTCTGAAGGGGCCACCAACTGTGTCTGCCGCAATGGCTA ACTTCTGAAGGGGCCACCAACTGCGTCTGCCGCAATGGCTA < 41bp 0.472841255120422 0.700657433337592 0.460604 0.8231034 prediction 0.401314866675185 Functional Gain - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23189624 chr1:23189627 synonymous SNV . 0 24 hm5C_associated_SNPs_129519 0 0 0 0 2 EPHB2 chr1:23189530 3'AG 23189530 Downstream 98bp
chr1 23189627 23189627 1 + T C SKCM 23189624 + 23189604 23189644 41 ACTTCTGAAGGGGCCACCAACTGTGTCTGCCGCAATGGCTA ACTTCTGAAGGGGCCACCAACTGCGTCTGCCGCAATGGCTA < 41bp 0.472841255120422 0.700657433337592 0.460604 0.8231034 prediction 0.401314866675185 Functional Gain - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23189624 chr1:23189627 synonymous SNV . 0 24 hm5C_associated_SNPs_129519 0 0 0 0 2 EPHB2 chr1:23189685 5'GT 23189685 Upstream 59bp
chr15 79189384 79189384 1 + C A UCEC 79189383 + 79189363 79189403 41 GCGATTATGAAGTGGCTCCTCCTGAGTACCATCGGAAAGCT GCGATTATGAAGTGGCTCCTCATGAGTACCATCGGAAAGCT < 41bp 0.621422039388551 0.822075518436385 0.051211983 0.08357543 prediction 0.401306958095668 Functional Gain - MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79189383 chr15:79189384 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_129522 0 0 1 0 1 MORF4L1 chr15:79189325 3'AG 79189325 Downstream 60bp
chr6 90539723 90539723 1 + C G rs367700022 90539719 + 90539699 90539739 41 AGGCTGCATGGCGCGGTAGTCCCCCGAGTGGAGGTCGGCTG AGGCTGCATGGCGCGGTAGTCCCCGGAGTGGAGGTCGGCTG < 41bp 0.432865133146767 0.700645156125257 0.311065 0.7539909 prediction 0.401290312250514 Functional Gain - CASP8AP2 ENSG00000118412 ncRNA_exonic Human protein_coding chr6:90539719 chr6:90539723 . . 0 25 hm5C_associated_SNPs_129527 0 0 1 0 1 CASP8AP2 chr6:90539786 5'GT 90539786 Upstream 64bp
chr11 64938874 64938874 1 + C T SKCM 64938873 + 64938853 64938893 41 ACTTCCCCTGTAGTTACCACCCAGGTAGAGCTGGGGGGCTG ACTTCCCCTGTAGTTACCACCTAGGTAGAGCTGGGGGGCTG < 41bp 0.607518234640691 0.808152506048779 0.10778901 0.13992652 prediction 0.401268542816176 Functional Gain - SPDYC ENSG00000204710 CDS Human protein_coding chr11:64938873 chr11:64938874 stopgain 0.009 0 22 hm5C_associated_SNPs_129530 0 0 1 0 2 SPDYC chr11:64938798 3'AG 64938798 Downstream 77bp
chr11 64938874 64938874 1 + C T SKCM 64938873 + 64938853 64938893 41 ACTTCCCCTGTAGTTACCACCCAGGTAGAGCTGGGGGGCTG ACTTCCCCTGTAGTTACCACCTAGGTAGAGCTGGGGGGCTG < 41bp 0.607518234640691 0.808152506048779 0.10778901 0.13992652 prediction 0.401268542816176 Functional Gain - SPDYC ENSG00000204710 CDS Human protein_coding chr11:64938873 chr11:64938874 stopgain 0.009 0 22 hm5C_associated_SNPs_129530 0 0 1 0 2 SPDYC chr11:64938970 5'GT 64938970 Upstream 97bp
chr2 219677109 219677109 1 + A G CESC 219677106 + 219677086 219677126 41 TGCTTCGGGGAACCAGGTGTCGGACATGGCTCAACTCTTCT TGCTTCGGGGAACCAGGTGTCGGGCATGGCTCAACTCTTCT < 41bp 0.448553000084799 0.700633354379516 0.85512835 0.9093268 prediction 0.401266708759032 Functional Gain - CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219677106 chr2:219677109 nonsynonymous SNV 0.011 1 24 hm5C_associated_SNPs_129531 0 0 0 0 1 CYP27A1 chr2:219677144 5'GT 219677144 Upstream 36bp
chr4 159136418 159136418 1 + C G STAD 159136417 + 159136397 159136437 41 TCAATCTGATATTACATTGTCCAAAGTTTTGGCCTTTTGCA TCAATCTGATATTACATTGTCGAAAGTTTTGGCCTTTTGCA < 41bp 0.386363670492667 0.700630565875619 0.02646625 0.24998894 prediction 0.401261131751239 Functional Gain - TMEM144 ENSG00000164124 CDS Human protein_coding chr4:159136417 chr4:159136418 nonsynonymous SNV 0.358 2 22 hm5C_associated_SNPs_129533 0 0 0 1 2 TMEM144 chr4:159136343 3'AG 159136343 Downstream 76bp
chr4 159136418 159136418 1 + C G STAD 159136417 + 159136397 159136437 41 TCAATCTGATATTACATTGTCCAAAGTTTTGGCCTTTTGCA TCAATCTGATATTACATTGTCGAAAGTTTTGGCCTTTTGCA < 41bp 0.386363670492667 0.700630565875619 0.02646625 0.24998894 prediction 0.401261131751239 Functional Gain - TMEM144 ENSG00000164124 CDS Human protein_coding chr4:159136417 chr4:159136418 nonsynonymous SNV 0.358 2 22 hm5C_associated_SNPs_129533 0 0 0 1 2 TMEM144 chr4:159136465 5'GT 159136465 Upstream 48bp
chr6 26502144 26502144 1 + C A UCEC 26502143 + 26502123 26502163 41 GATGGAAGCTACGAAGAAGCCCTGGTGCATCTGAAGGTGGC GATGGAAGCTACGAAGAAGCCATGGTGCATCTGAAGGTGGC < 41bp 0.433075817652959 0.700628642612957 0.33449394 0.3621637 prediction 0.401257285225914 Functional Gain - BTN1A1 ENSG00000124557 CDS Human protein_coding chr6:26502143 chr6:26502144 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_129535 0 0 0 0 1 BTN1A1 chr6:26502165 5'GT 26502165 Upstream 22bp
chr17 35825613 35825613 1 + T G BRCA 35825610 + 35825590 35825630 41 ATTTGCAAGAATTGTGGGGCCAGTGGAACATGACAAATTCA ATTTGCAAGAATTGTGGGGCCAGGGGAACATGACAAATTCA < 41bp 0.299797506661913 0.700626707793661 0.7396881 0.89668584 prediction 0.401253415587322 Functional Gain - TADA2A ENSG00000108264 CDS Human other chr17:35825610 chr17:35825613 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_129536 0 0 1 0 2 TADA2A chr17:35825535 3'AG 35825535 Downstream 79bp
chr17 35825613 35825613 1 + T G BRCA 35825610 + 35825590 35825630 41 ATTTGCAAGAATTGTGGGGCCAGTGGAACATGACAAATTCA ATTTGCAAGAATTGTGGGGCCAGGGGAACATGACAAATTCA < 41bp 0.299797506661913 0.700626707793661 0.7396881 0.89668584 prediction 0.401253415587322 Functional Gain - TADA2A ENSG00000108264 CDS Human other chr17:35825610 chr17:35825613 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_129536 0 0 1 0 2 TADA2A chr17:35825645 5'GT 35825645 Upstream 33bp
chr22 19502506 19502506 1 + C A UCEC 19502502 + 19502482 19502522 41 CCGCAGGGCACTCCAGATGTCATGCTGTTCTCTAGGCCGGC CCGCAGGGCACTCCAGATGTCATGATGTTCTCTAGGCCGGC < 41bp 0.287501213539255 0.700617739860405 0.28516477 0.3601489 prediction 0.401235479720811 Functional Gain - CDC45 ENSG00000093009 CDS Human protein_coding chr22:19502502 chr22:19502506 nonsynonymous SNV 0.398 1 25 hm5C_associated_SNPs_129540 0 0 1 0 1 CDC45 chr22:19502488 3'AG 19502488 Downstream 19bp
chr11 60695323 60695323 1 + C G HNSC 60695319 + 60695299 60695339 41 GCCGGCACTGCTCACCAAGCCTGCCGCTTCCAGGTGAGTAG GCCGGCACTGCTCACCAAGCCTGCGGCTTCCAGGTGAGTAG < 41bp 0.406909587282788 0.700609721499288 0.048529148 0.1732038 prediction 0.401219442998577 Functional Gain - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60695319 chr11:60695323 nonsynonymous SNV 0.871 3 25 hm5C_associated_SNPs_129543 0 0 1 0 1 TMEM132A chr11:60695331 5'GT 60695331 Upstream 9bp
chr8 36763287 36763287 1 + T C COAD 36763284 + 36763264 36763304 41 TTGATAGCAGTGGGATGTTTCACTGGTGCAAACCAACCTCT TTGATAGCAGTGGGATGTTTCACCGGTGCAAACCAACCTCT < 41bp 0.483037903993467 0.700601477792419 0.7615634 0.8962472 prediction 0.401202955584837 Functional Gain - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36763284 chr8:36763287 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_129545 0 0 0 1 2 KCNU1 chr8:36763226 3'AG 36763226 Downstream 62bp
chr8 36763287 36763287 1 + T C COAD 36763284 + 36763264 36763304 41 TTGATAGCAGTGGGATGTTTCACTGGTGCAAACCAACCTCT TTGATAGCAGTGGGATGTTTCACCGGTGCAAACCAACCTCT < 41bp 0.483037903993467 0.700601477792419 0.7615634 0.8962472 prediction 0.401202955584837 Functional Gain - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36763284 chr8:36763287 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_129545 0 0 0 1 2 KCNU1 chr8:36763322 5'GT 36763322 Upstream 36bp
chr11 56954725 56954725 1 + A G STAD 56954722 + 56954702 56954742 41 TGGCTTCTGTGTTACAGATTCTCAGCTGGCTGAGTGCCGGG TGGCTTCTGTGTTACAGATTCTCGGCTGGCTGAGTGCCGGG < 41bp 0.620418251819737 0.821008740076805 0.22157198 0.41399932 prediction 0.401180976514137 Functional Gain - LRRC55 ENSG00000183908 CDS Human protein_coding chr11:56954722 chr11:56954725 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_129551 0 0 0 0 1 LRRC55 chr11:56954719 3'AG 56954719 Downstream 7bp
chr2 137872800 137872800 1 + C T SKCM 137872799 + 137872779 137872819 41 CCCGTGTGTGGCGGTGGGATCCAGACCCGGGAGGTGTACTG CCCGTGTGTGGCGGTGGGATCTAGACCCGGGAGGTGTACTG < 41bp 0.53518449184386 0.735759975384007 0.8279919 0.5923084 prediction 0.401150967080295 Functional Gain - THSD7B ENSG00000144229 CDS Human protein_coding chr2:137872799 chr2:137872800 stopgain 0.997 1 22 hm5C_associated_SNPs_129558 0 0 0 0 1 THSD7B chr2:137872863 5'GT 137872863 Upstream 64bp
chr7 123516864 123516864 1 + C A LUAD 123516863 + 123516843 123516883 41 TGATTTAGGGAGCTACATAGCCAATGTGACCAGAGCTGCTG TGATTTAGGGAGCTACATAGCAAATGTGACCAGAGCTGCTG < 41bp 0.433370142893845 0.700570476488651 0.13070789 0.41169724 prediction 0.401140952977303 Functional Gain - HYAL4 ENSG00000106302 CDS Human protein_coding chr7:123516863 chr7:123516864 synonymous SNV . 0 22 hm5C_associated_SNPs_129560 0 0 0 2 1 HYAL4 chr7:123516808 3'AG 123516808 Downstream 57bp
chr19 30018151 30018151 1 + T C KIRP 30018148 + 30018128 30018168 41 AGAAGTCCCCAAAGATGTGACAGTACGGGAGGGAGACGACA AGAAGTCCCCAAAGATGTGACAGCACGGGAGGGAGACGACA < 41bp 0.545956590624096 0.746520390816783 0.16160503 0.12315035 prediction 0.401127600385373 Functional Gain - VSTM2B ENSG00000187135 CDS Human protein_coding chr19:30018148 chr19:30018151 nonsynonymous SNV 0.985 1 24 hm5C_associated_SNPs_129563 0 0 0 0 1 VSTM2B chr19:30018118 3'AG 30018118 Downstream 34bp
chr17 72343991 72343991 1 + C T UCEC 72343990 + 72343970 72344010 41 AGCAGTGCCTTCGAGGAGTCCCGGAACACCCTGACCTACGC AGCAGTGCCTTCGAGGAGTCCTGGAACACCCTGACCTACGC < 41bp 0.650574237703041 0.851134669171841 0.53527665 0.7642896 prediction 0.401120862937599 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72343990 chr17:72343991 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_129564 0 0 0 0 1 KIF19 chr17:72343916 3'AG 72343916 Downstream 76bp
chr3 128621412 128621412 1 + T C LIHC 128621410 + 128621390 128621430 41 CTGCAGGTGGCCATGAACATCCTCAACAGCGGCCGGTTCAG CTGCAGGTGGCCATGAACATCCCCAACAGCGGCCGGTTCAG < 41bp 0.405504829007947 0.70055685768281 0.06048873 0.16018033 prediction 0.401113715365621 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128621410 chr3:128621412 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_129565 0 0 1 0 3 ACAD9 chr3:128621396 3'AG 128621396 Downstream 17bp
chr3 128621412 128621412 1 + T C LIHC 128621410 + 128621390 128621430 41 CTGCAGGTGGCCATGAACATCCTCAACAGCGGCCGGTTCAG CTGCAGGTGGCCATGAACATCCCCAACAGCGGCCGGTTCAG < 41bp 0.405504829007947 0.70055685768281 0.06048873 0.16018033 prediction 0.401113715365621 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128621410 chr3:128621412 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_129565 0 0 1 0 3 ACAD9 chr3:128621471 5'GT 128621471 Upstream 60bp
chr3 128621412 128621412 1 + T C LIHC 128621410 + 128621390 128621430 41 CTGCAGGTGGCCATGAACATCCTCAACAGCGGCCGGTTCAG CTGCAGGTGGCCATGAACATCCCCAACAGCGGCCGGTTCAG < 41bp 0.405504829007947 0.70055685768281 0.06048873 0.16018033 prediction 0.401113715365621 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128621410 chr3:128621412 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_129565 0 0 1 0 3 ACAD9 chr3:128621475 5'GT 128621475 Upstream 64bp
chr1 156551848 156551848 1 + A G rs6682716 156551845 + 156551825 156551865 41 GAGGCTTGCCGAGAGGAGCACTGAGAGGCGACTGCTGGGTG GAGGCTTGCCGAGAGGAGCACTGGGAGGCGACTGCTGGGTG < 41bp 0.645681812195711 0.846236835561833 0.8415636 0.9050741 prediction 0.401110046732243 Functional Gain - TTC24 ENSG00000187862 CDS Human protein_coding chr1:156551845 chr1:156551848 nonsynonymous SNV 0.148 1 24 hm5C_associated_SNPs_129566 0 0 0 0 1 TTC24 chr1:156551862 5'GT 156551862 Upstream 15bp
chr5 178503472 178503472 1 + C T rs116407910 178503471 + 178503451 178503491 41 TGTGACATTCAGGGATGTGGCCGTGTTCTTCAGCCAGGACG TGTGACATTCAGGGATGTGGCTGTGTTCTTCAGCCAGGACG < 41bp 0.587589244723276 0.788143478852555 0.38003927 0.1489228 prediction 0.401108468258557 Functional Gain - ZNF354C ENSG00000177932 CDS Human protein_coding chr5:178503471 chr5:178503472 synonymous SNV . 0 22 hm5C_associated_SNPs_129567 0 0 0 0 1 ZNF354C chr5:178503446 3'AG 178503446 Downstream 27bp
chr16 57220297 57220297 1 + C A rs532577746 57220293 + 57220273 57220313 41 GTCCATCTTTGCCGTTCTCTCGGACCTGTCACAAAGGAGTC GTCCATCTTTGCCGTTCTCTCGGAACTGTCACAAAGGAGTC < 41bp 0.724914688824427 0.925464889667156 0.90492606 0.8825245 prediction 0.401100401685457 Functional Gain - RSPRY1 ENSG00000159579 UTR5 Human protein_coding chr16:57220293 chr16:57220297 . . 0 25 hm5C_associated_SNPs_129569 0 0 1 0 2 RSPRY1 chr16:57220341 5'GT 57220341 Upstream 45bp
chr16 57220297 57220297 1 + C A rs532577746 57220293 + 57220273 57220313 41 GTCCATCTTTGCCGTTCTCTCGGACCTGTCACAAAGGAGTC GTCCATCTTTGCCGTTCTCTCGGAACTGTCACAAAGGAGTC < 41bp 0.724914688824427 0.925464889667156 0.90492606 0.8825245 prediction 0.401100401685457 Functional Gain - RSPRY1 ENSG00000159579 UTR5 Human protein_coding chr16:57220293 chr16:57220297 . . 0 25 hm5C_associated_SNPs_129569 0 0 1 0 2 RSPRY1 chr16:57220363 5'GT 57220363 Upstream 67bp
chr17 47886508 47886508 1 + A G rs141200367 47886505 + 47886485 47886525 41 GAGCACAGAGCCGGGATAAGCAGATAGAAGAAAGGATGCTG GAGCACAGAGCCGGGATAAGCAGGTAGAAGAAAGGATGCTG < 41bp 0.595866878162621 0.796408778667145 0.88996637 0.9024914 prediction 0.401083801009049 Functional Gain - KAT7 ENSG00000136504 CDS Human protein_coding chr17:47886505 chr17:47886508 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_129573 0 0 1 0 2 KAT7 chr17:47886481 3'AG 47886481 Downstream 28bp
chr17 47886508 47886508 1 + A G rs141200367 47886505 + 47886485 47886525 41 GAGCACAGAGCCGGGATAAGCAGATAGAAGAAAGGATGCTG GAGCACAGAGCCGGGATAAGCAGGTAGAAGAAAGGATGCTG < 41bp 0.595866878162621 0.796408778667145 0.88996637 0.9024914 prediction 0.401083801009049 Functional Gain - KAT7 ENSG00000136504 CDS Human protein_coding chr17:47886505 chr17:47886508 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_129573 0 0 1 0 2 KAT7 chr17:47886570 5'GT 47886570 Upstream 63bp
chr3 142503601 142503601 1 + T A COAD 142503597 + 142503577 142503617 41 TGAACACTGTTTGGTTTGGACAGATGTCGGGTTACCGACGC TGAACACTGTTTGGTTTGGACAGAAGTCGGGTTACCGACGC < 41bp 0.699187415911553 0.899728433967808 0.8258285 0.767816 prediction 0.40108203611251 Functional Gain - TRPC1 ENSG00000144935 CDS Human protein_coding chr3:142503597 chr3:142503601 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_129574 0 0 1 0 1 TRPC1 chr3:142503546 3'AG 142503546 Downstream 56bp
chr19 58797098 58797098 1 + C T rs149035373 58797097 + 58797077 58797117 41 TTTCAGGAACCAGTGACCTTCCGGGATGTGGCTGTGGACTT TTTCAGGAACCAGTGACCTTCTGGGATGTGGCTGTGGACTT < 41bp 0.611847894544122 0.812388579571472 0.58280504 0.39967683 prediction 0.4010813700547 Functional Gain - ZNF8 ENSG00000083842;ENSG00000273439 CDS Human other chr19:58797097 chr19:58797098 nonsynonymous SNV 0.988 0 22 hm5C_associated_SNPs_129575 0 0 1 0 1 ZNF8 chr19:58797083 3'AG 58797083 Downstream 16bp
chr4 187086509 187086509 1 + T A SKCM 187086507 + 187086487 187086527 41 ATGTGTTGCAGGCCGACTGGCGTGGACCACATGGCTTCCCC ATGTGTTGCAGGCCGACTGGCGAGGACCACATGGCTTCCCC < 41bp 0.557383455544689 0.757915125370292 0.6607579 0.8969264 prediction 0.401063339651205 Functional Gain - FAM149A ENSG00000109794 CDS Human protein_coding chr4:187086507 chr4:187086509 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_129580 0 0 0 0 1 FAM149A chr4:187086498 3'AG 187086498 Downstream 12bp
chr6 7189439 7189439 1 + A G BRCA 7189436 + 7189416 7189456 41 GACCACTCATGCAGCATCTGCGGAAAGTCACTGAGCTCGGC GACCACTCATGCAGCATCTGCGGGAAGTCACTGAGCTCGGC < 41bp 0.463379862195166 0.700527644405736 0.5517626 0.9010452 prediction 0.401055288811472 Functional Gain - RREB1 ENSG00000124782 CDS Human protein_coding chr6:7189436 chr6:7189439 synonymous SNV . 0 24 hm5C_associated_SNPs_129582 0 0 1 0 1 RREB1 chr6:7189392 3'AG 7189392 Downstream 48bp
chr15 85121256 85121256 1 + C A OV 85121255 + 85121235 85121275 41 AGAAAATAATAATGGGGCCACCGGAGGCCAGCCGAACACAC AGAAAATAATAATGGGGCCACAGGAGGCCAGCCGAACACAC < 41bp 0.627738560107635 0.828262547618226 0.8556927 0.7961159 prediction 0.401047975021182 Functional Gain - LINC00933 ENSG00000259728 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:85121255 chr15:85121256 . . 0 22 hm5C_associated_SNPs_129584 0 0 0 0 1 LINC00933 chr15:85121179 3'AG 85121179 Downstream 78bp
chr8 99139913 99139913 1 + A G STAD 99139910 + 99139890 99139930 41 AGTGAATGAGCAGTCTTCCTCCAAAGGGATGTTTAGAAAAA AGTGAATGAGCAGTCTTCCTCCAGAGGGATGTTTAGAAAAA < 41bp 0.449703215957995 0.700523750535749 0.18005371 0.88562346 prediction 0.401047501071498 Functional Gain - POP1 ENSG00000104356 CDS Human protein_coding chr8:99139910 chr8:99139913 nonsynonymous SNV 0.766 0 24 hm5C_associated_SNPs_129585 0 0 1 0 2 POP1 chr8:99139823 3'AG 99139823 Downstream 91bp
chr8 99139913 99139913 1 + A G STAD 99139910 + 99139890 99139930 41 AGTGAATGAGCAGTCTTCCTCCAAAGGGATGTTTAGAAAAA AGTGAATGAGCAGTCTTCCTCCAGAGGGATGTTTAGAAAAA < 41bp 0.449703215957995 0.700523750535749 0.18005371 0.88562346 prediction 0.401047501071498 Functional Gain - POP1 ENSG00000104356 CDS Human protein_coding chr8:99139910 chr8:99139913 nonsynonymous SNV 0.766 0 24 hm5C_associated_SNPs_129585 0 0 1 0 2 POP1 chr8:99139990 5'GT 99139990 Upstream 78bp
chr19 19606611 19606611 1 + C T UCEC 19606610 + 19606590 19606630 41 GTCATACCCCCGCCCCTGGTCCGAGGTGGGCAGCAGGCGTC GTCATACCCCCGCCCCTGGTCTGAGGTGGGCAGCAGGCGTC < 41bp 0.624469544896875 0.824989809820702 0.87180823 0.40093875 prediction 0.401040529847653 Functional Gain - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19606610 chr19:19606611 stopgain 0.917 1 22 hm5C_associated_SNPs_129587 0 0 1 0 2 GATAD2A chr19:19606563 3'AG 19606563 Downstream 49bp
chr19 19606611 19606611 1 + C T UCEC 19606610 + 19606590 19606630 41 GTCATACCCCCGCCCCTGGTCCGAGGTGGGCAGCAGGCGTC GTCATACCCCCGCCCCTGGTCTGAGGTGGGCAGCAGGCGTC < 41bp 0.624469544896875 0.824989809820702 0.87180823 0.40093875 prediction 0.401040529847653 Functional Gain - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19606610 chr19:19606611 stopgain 0.917 1 22 hm5C_associated_SNPs_129587 0 0 1 0 2 GATAD2A chr19:19606694 5'GT 19606694 Upstream 84bp
chr16 71419504 71419504 1 + C G LUAD 71419500 + 71419480 71419520 41 GATAGAAGCGGCTACATTGACGAGCATGAGCTGGATGCCCT GATAGAAGCGGCTACATTGACGAGGATGAGCTGGATGCCCT < 41bp 0.682848983724362 0.883369027900663 0.70233476 0.8728194 prediction 0.401040088352601 Functional Gain - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71419500 chr16:71419504 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_129588 0 0 0 0 2 CALB2 chr16:71419480 3'AG 71419480 Downstream 25bp
chr16 71419504 71419504 1 + C G LUAD 71419500 + 71419480 71419520 41 GATAGAAGCGGCTACATTGACGAGCATGAGCTGGATGCCCT GATAGAAGCGGCTACATTGACGAGGATGAGCTGGATGCCCT < 41bp 0.682848983724362 0.883369027900663 0.70233476 0.8728194 prediction 0.401040088352601 Functional Gain - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71419500 chr16:71419504 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_129588 0 0 0 0 2 CALB2 chr16:71419551 5'GT 71419551 Upstream 48bp
chr1 161136647 161136647 1 + A G UCEC 161136644 + 161136624 161136664 41 CCCCAGGTTTCCGCATGGGCCGGACCGTGGTCGTGCTGGGC CCCCAGGTTTCCGCATGGGCCGGGCCGTGGTCGTGCTGGGC < 41bp 0.462332764611746 0.70051936584737 0.10797125 0.35651138 prediction 0.401038731694741 Functional Gain - PPOX ENSG00000143224 CDS Human protein_coding chr1:161136644 chr1:161136647 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_129591 0 0 1 0 2 PPOX chr1:161136630 3'AG 161136630 Downstream 18bp
chr1 161136647 161136647 1 + A G UCEC 161136644 + 161136624 161136664 41 CCCCAGGTTTCCGCATGGGCCGGACCGTGGTCGTGCTGGGC CCCCAGGTTTCCGCATGGGCCGGGCCGTGGTCGTGCTGGGC < 41bp 0.462332764611746 0.70051936584737 0.10797125 0.35651138 prediction 0.401038731694741 Functional Gain - PPOX ENSG00000143224 CDS Human protein_coding chr1:161136644 chr1:161136647 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_129591 0 0 1 0 2 PPOX chr1:161136724 5'GT 161136724 Upstream 78bp
chrX 100646519 100646519 1 + T C STAD 100646516 + 100646496 100646536 41 ACCAACCCCATAAAGTGACACAGTACAAGAAGGGCAAGGAT ACCAACCCCATAAAGTGACACAGCACAAGAAGGGCAAGGAT < 41bp 0.473987760938635 0.700519055805052 0.38838184 0.084875256 prediction 0.401038111610105 Functional Gain - RPL36A;RPL36A-HNRNPH2 ENSG00000241343;ENSG00000257529 CDS Human other chrX:100646516 chrX:100646519 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_129592 0 0 1 0 1 RPL36A;RPL36A-HNRNPH2 chrX:100646447 3'AG 100646447 Downstream 73bp
chr19 1248612 1248612 1 + C G rs557216016 1248609 + 1248589 1248629 41 CCCGGCCAGCGCGCATTCGGCCCCGGACGAAGGTACTCGCA CCCGGCCAGCGCGCATTCGGCCCGGGACGAAGGTACTCGCA < 41bp 0.496920573921743 0.700508702935666 0.32445592 0.62377757 prediction 0.401017405871333 Functional Gain - MIDN ENSG00000167470 UTR5 Human protein_coding chr19:1248609 chr19:1248612 . . 0 24 hm5C_associated_SNPs_129600 0 0 1 0 1 MIDN chr19:1248659 5'GT 1248659 Upstream 48bp
chr17 902085 902085 1 + C A UCEC 902084 + 902064 902104 41 ATACCAACGTGGGCTTTGACCCTAAGGATCCTTACCGTACA ATACCAACGTGGGCTTTGACCATAAGGATCCTTACCGTACA < 41bp 0.426027689880224 0.700508408825122 0.07993108 0.260121 prediction 0.401016817650244 Functional Gain - TIMM22 ENSG00000177370 CDS Human protein_coding chr17:902084 chr17:902085 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_129601 0 0 1 0 1 TIMM22 chr17:902019 3'AG 902019 Downstream 67bp
chr9 98229662 98229662 1 + A G UCEC 98229659 + 98229639 98229679 41 GTCTCTCACTCGGGTGGTGCCATAAAGGCTGACCCCCAGCA GTCTCTCACTCGGGTGGTGCCATGAAGGCTGACCCCCAGCA < 41bp 0.622531341923034 0.823035831401778 0.28368878 0.3371057 prediction 0.401008978957488 Functional Gain - PTCH1 ENSG00000185920 CDS Human protein_coding chr9:98229659 chr9:98229662 nonsynonymous SNV 0.993 5 24 hm5C_associated_SNPs_129604 0 0 0 0 2 PTCH1 chr9:98229614 3'AG 98229614 Downstream 49bp
chr9 98229662 98229662 1 + A G UCEC 98229659 + 98229639 98229679 41 GTCTCTCACTCGGGTGGTGCCATAAAGGCTGACCCCCAGCA GTCTCTCACTCGGGTGGTGCCATGAAGGCTGACCCCCAGCA < 41bp 0.622531341923034 0.823035831401778 0.28368878 0.3371057 prediction 0.401008978957488 Functional Gain - PTCH1 ENSG00000185920 CDS Human protein_coding chr9:98229659 chr9:98229662 nonsynonymous SNV 0.993 5 24 hm5C_associated_SNPs_129604 0 0 0 0 2 LOC100507346 chr9:98229728 5'GT 98229728 Upstream 67bp
chr3 186791960 186791960 1 + C T GBM 186791959 + 186791939 186791979 41 TTTTTCAGTGGTACCAGAATCCGGATTATAATTTCTTTAAC TTTTTCAGTGGTACCAGAATCTGGATTATAATTTCTTTAAC < 41bp 0.635926785023353 0.836431253266101 0.8065517 0.6288841 prediction 0.401008936485496 Functional Gain - ST6GAL1 ENSG00000073849 CDS Human protein_coding chr3:186791959 chr3:186791960 nonsynonymous SNV 0.415 4 22 hm5C_associated_SNPs_129605 0 0 1 0 1 ST6GAL1 chr3:186791947 3'AG 186791947 Downstream 14bp
chr1 62908936 62908936 1 + A G LUAD 62908933 + 62908913 62908953 41 GGCTAGTTTTCTCTTAAATCCAGAGAAATATACTGATGAAC GGCTAGTTTTCTCTTAAATCCAGGGAAATATACTGATGAAC < 41bp 0.455338179292464 0.700493463821101 0.46222097 0.8977424 prediction 0.400986927642203 Functional Gain - USP1 ENSG00000162607 CDS Human protein_coding chr1:62908933 chr1:62908936 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_129609 0 0 1 0 1 USP1 chr1:62908990 5'GT 62908990 Upstream 55bp
chr3 100067690 100067690 1 + T C UCEC 100067687 + 100067667 100067707 41 CCAGGAGCTTTTAATCTGACCACTGGACCAGCCCATTGGGA CCAGGAGCTTTTAATCTGACCACCGGACCAGCCCATTGGGA < 41bp 0.542800857840031 0.743288139867333 0.21839494 0.1743755 prediction 0.400974564054605 Functional Gain - NIT2 ENSG00000114021 CDS Human protein_coding chr3:100067687 chr3:100067690 synonymous SNV . 0 24 hm5C_associated_SNPs_129611 0 0 1 0 2 NIT2 chr3:100067647 3'AG 100067647 Downstream 44bp
chr3 100067690 100067690 1 + T C UCEC 100067687 + 100067667 100067707 41 CCAGGAGCTTTTAATCTGACCACTGGACCAGCCCATTGGGA CCAGGAGCTTTTAATCTGACCACCGGACCAGCCCATTGGGA < 41bp 0.542800857840031 0.743288139867333 0.21839494 0.1743755 prediction 0.400974564054605 Functional Gain - NIT2 ENSG00000114021 CDS Human protein_coding chr3:100067687 chr3:100067690 synonymous SNV . 0 24 hm5C_associated_SNPs_129611 0 0 1 0 2 NIT2 chr3:100067725 5'GT 100067725 Upstream 36bp
chr17 40690452 40690452 1 + C G rs200496310 40690451 + 40690431 40690471 41 GCGAATGGGCAACCTGCACACCTGGGATGGCCCCCTGCCCC GCGAATGGGCAACCTGCACACGTGGGATGGCCCCCTGCCCC < 41bp 0.701598402055431 0.902083442208863 0.8696756 0.94621986 prediction 0.400970080306863 Functional Gain - NAGLU ENSG00000108784 CDS Human protein_coding chr17:40690451 chr17:40690452 synonymous SNV . 0 22 hm5C_associated_SNPs_129613 0 0 1 0 2 NAGLU chr17:40690357 3'AG 40690357 Downstream 96bp
chr17 40690452 40690452 1 + C G rs200496310 40690451 + 40690431 40690471 41 GCGAATGGGCAACCTGCACACCTGGGATGGCCCCCTGCCCC GCGAATGGGCAACCTGCACACGTGGGATGGCCCCCTGCCCC < 41bp 0.701598402055431 0.902083442208863 0.8696756 0.94621986 prediction 0.400970080306863 Functional Gain - NAGLU ENSG00000108784 CDS Human protein_coding chr17:40690451 chr17:40690452 synonymous SNV . 0 22 hm5C_associated_SNPs_129613 0 0 1 0 2 NAGLU chr17:40690503 5'GT 40690503 Upstream 52bp
chr1 17668840 17668840 1 + T C rs113714693 17668838 + 17668818 17668858 41 CAAGACAGCGTGGTCTTCCGCGTGGCGCCCTGGATCATGAC CAAGACAGCGTGGTCTTCCGCGCGGCGCCCTGGATCATGAC < 41bp 0.657517587507624 0.85799674996883 0.44494775 0.7240686 prediction 0.400958324922412 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17668838 chr1:17668840 nonsynonymous SNV 0.993 3 23 hm5C_associated_SNPs_129615 0 0 0 0 2 PADI4 chr1:17668794 3'AG 17668794 Downstream 47bp
chr1 17668840 17668840 1 + T C rs113714693 17668838 + 17668818 17668858 41 CAAGACAGCGTGGTCTTCCGCGTGGCGCCCTGGATCATGAC CAAGACAGCGTGGTCTTCCGCGCGGCGCCCTGGATCATGAC < 41bp 0.657517587507624 0.85799674996883 0.44494775 0.7240686 prediction 0.400958324922412 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17668838 chr1:17668840 nonsynonymous SNV 0.993 3 23 hm5C_associated_SNPs_129615 0 0 0 0 2 PADI4 chr1:17668897 5'GT 17668897 Upstream 58bp
chr10 105202030 105202030 1 + C A LIHC 105202029 + 105202009 105202049 41 AAGGCAGAGAAGGAACTGTCCCGCATTGAGGAGGCGCTGAT AAGGCAGAGAAGGAACTGTCCAGCATTGAGGAGGCGCTGAT < 41bp 0.439877116092576 0.700478192585223 0.13344765 0.08980402 prediction 0.400956385170447 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105202029 chr10:105202030 nonsynonymous SNV 0.990 3 22 hm5C_associated_SNPs_129616 0 0 1 0 1 PDCD11 chr10:105201970 3'AG 105201970 Downstream 61bp
chr2 108625064 108625064 1 + T A UCEC 108625062 + 108625042 108625082 41 AGTTTCTGCTGCTGTTATGTCATCAGCAGATTCTTCCATCT AGTTTCTGCTGCTGTTATGTCAACAGCAGATTCTTCCATCT < 41bp 0.542017221243242 0.742492653123205 0.044378072 0.07844707 prediction 0.400950863759926 Functional Gain - SLC5A7 ENSG00000115665 CDS Human protein_coding chr2:108625062 chr2:108625064 nonsynonymous SNV 0.990 5 23 hm5C_associated_SNPs_129619 0 0 0 0 1 SLC5A7 chr2:108625138 5'GT 108625138 Upstream 75bp
chr11 61249841 61249841 1 + T G UCEC 61249837 + 61249817 61249857 41 CGTAGGCACCGGCTACAAATCAAATTTCCAGCCCGTGGTCT CGTAGGCACCGGCTACAAATCAAAGTTCCAGCCCGTGGTCT < 41bp 0.573849147539338 0.774318314003873 0.24018699 0.47507277 prediction 0.400938332929069 Functional Gain - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61249837 chr11:61249841 nonsynonymous SNV 0.770 3 25 hm5C_associated_SNPs_129621 0 0 0 0 2 PPP1R32 chr11:61249783 3'AG 61249783 Downstream 59bp
chr11 61249841 61249841 1 + T G UCEC 61249837 + 61249817 61249857 41 CGTAGGCACCGGCTACAAATCAAATTTCCAGCCCGTGGTCT CGTAGGCACCGGCTACAAATCAAAGTTCCAGCCCGTGGTCT < 41bp 0.573849147539338 0.774318314003873 0.24018699 0.47507277 prediction 0.400938332929069 Functional Gain - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61249837 chr11:61249841 nonsynonymous SNV 0.770 3 25 hm5C_associated_SNPs_129621 0 0 0 0 2 PPP1R32 chr11:61249900 5'GT 61249900 Upstream 60bp
chr7 1273220 1273220 1 + C T LUAD 1273219 + 1273199 1273239 41 GCGCACCCGCACCAACTTCACCGGCTGGCAGCTGGAGGAGC GCGCACCCGCACCAACTTCACTGGCTGGCAGCTGGAGGAGC < 41bp 0.465945844406422 0.700468524325449 0.19703448 0.37732485 prediction 0.400937048650899 Functional Gain - UNCX ENSG00000164853 CDS Human protein_coding chr7:1273219 chr7:1273220 synonymous SNV . 0 22 hm5C_associated_SNPs_129622 0 0 0 0 1 UNCX chr7:1273156 3'AG 1273156 Downstream 65bp
chr6 6589054 6589054 1 + A G LUSC 6589051 + 6589031 6589071 41 GGCGGTGGGAAAGCCTGGCCCACACACGTGGTCTGTAGCGA GGCGGTGGGAAAGCCTGGCCCACGCACGTGGTCTGTAGCGA < 41bp 0.442924466415569 0.700467823416187 0.018572658 0.06557414 prediction 0.400935646832374 Functional Gain - LY86 ENSG00000112799 CDS Human protein_coding chr6:6589051 chr6:6589054 synonymous SNV . 0 24 hm5C_associated_SNPs_129623 0 0 0 0 1 LY86 chr6:6589103 5'GT 6589103 Upstream 50bp
chr11 60535069 60535069 1 + C T COAD 60535068 + 60535048 60535088 41 AGCGTGCTGCTCATGGTTCGCCGCGGCCACGTGGGCATCTT AGCGTGCTGCTCATGGTTCGCTGCGGCCACGTGGGCATCTT < 41bp 0.610778051772369 0.811245552723031 0.16026273 0.056892306 prediction 0.400935001901323 Functional Gain - MS4A15 ENSG00000166961 CDS Human protein_coding chr11:60535068 chr11:60535069 nonsynonymous SNV 0.673 1 22 hm5C_associated_SNPs_129624 0 0 0 0 3 MS4A15 chr11:60535006 3'AG 60535006 Downstream 64bp
chr11 60535069 60535069 1 + C T COAD 60535068 + 60535048 60535088 41 AGCGTGCTGCTCATGGTTCGCCGCGGCCACGTGGGCATCTT AGCGTGCTGCTCATGGTTCGCTGCGGCCACGTGGGCATCTT < 41bp 0.610778051772369 0.811245552723031 0.16026273 0.056892306 prediction 0.400935001901323 Functional Gain - MS4A15 ENSG00000166961 CDS Human protein_coding chr11:60535068 chr11:60535069 nonsynonymous SNV 0.673 1 22 hm5C_associated_SNPs_129624 0 0 0 0 3 MS4A15 chr11:60535040 3'AG 60535040 Downstream 30bp
chr11 60535069 60535069 1 + C T COAD 60535068 + 60535048 60535088 41 AGCGTGCTGCTCATGGTTCGCCGCGGCCACGTGGGCATCTT AGCGTGCTGCTCATGGTTCGCTGCGGCCACGTGGGCATCTT < 41bp 0.610778051772369 0.811245552723031 0.16026273 0.056892306 prediction 0.400935001901323 Functional Gain - MS4A15 ENSG00000166961 CDS Human protein_coding chr11:60535068 chr11:60535069 nonsynonymous SNV 0.673 1 22 hm5C_associated_SNPs_129624 0 0 0 0 3 MS4A15 chr11:60535128 5'GT 60535128 Upstream 60bp
chr22 35689038 35689038 1 + T C COAD 35689035 + 35689015 35689055 41 GTGCTTCTGGATTCCATTATCTGTGCCCTTGGCCCCTTGGC GTGCTTCTGGATTCCATTATCTGCGCCCTTGGCCCCTTGGC < 41bp 0.574714576671486 0.775177423821251 0.18730861 0.39882377 prediction 0.400925694299531 Functional Gain - HMGXB4 ENSG00000100281 CDS Human protein_coding chr22:35689035 chr22:35689038 synonymous SNV . 0 24 hm5C_associated_SNPs_129628 0 0 1 0 1 HMGXB4 chr22:35689107 5'GT 35689107 Upstream 70bp
chr1 161645052 161645052 1 + C T rs28651835 161645051 + 161645031 161645071 41 TGTGTGCCCCTCCCAGCTCTCCCAGGATACCCTGAGTGCAG TGTGTGCCCCTCCCAGCTCTCTCAGGATACCCTGAGTGCAG < 41bp 0.444841951899125 0.700458137628134 0.24868825 0.006698936 prediction 0.400916275256267 Functional Gain - FCGR2B ENSG00000072694 CDS Human protein_coding chr1:161645051 chr1:161645052 nonsynonymous SNV 0.236 0 22 hm5C_associated_SNPs_129630 0 0 1 0 2 FCGR2B chr1:161645047 3'AG 161645047 Downstream 6bp
chr1 161645052 161645052 1 + C T rs28651835 161645051 + 161645031 161645071 41 TGTGTGCCCCTCCCAGCTCTCCCAGGATACCCTGAGTGCAG TGTGTGCCCCTCCCAGCTCTCTCAGGATACCCTGAGTGCAG < 41bp 0.444841951899125 0.700458137628134 0.24868825 0.006698936 prediction 0.400916275256267 Functional Gain - FCGR2B ENSG00000072694 CDS Human protein_coding chr1:161645051 chr1:161645052 nonsynonymous SNV 0.236 0 22 hm5C_associated_SNPs_129630 0 0 1 0 2 FCGR2B chr1:161645103 5'GT 161645103 Upstream 52bp
chr1 179271879 179271879 1 + T C HNSC 179271877 + 179271857 179271897 41 TGTCAAAGTCCAGGGAAAATCCTGAGGAAGATGAAGACCAG TGTCAAAGTCCAGGGAAAATCCCGAGGAAGATGAAGACCAG < 41bp 0.669451936077249 0.869909060988932 0.24871051 0.43648806 prediction 0.400914249823365 Functional Gain - SOAT1 ENSG00000057252 CDS Human protein_coding chr1:179271877 chr1:179271879 synonymous SNV . 0 23 hm5C_associated_SNPs_129631 0 0 1 0 2 SOAT1 chr1:179271812 3'AG 179271812 Downstream 68bp
chr1 179271879 179271879 1 + T C HNSC 179271877 + 179271857 179271897 41 TGTCAAAGTCCAGGGAAAATCCTGAGGAAGATGAAGACCAG TGTCAAAGTCCAGGGAAAATCCCGAGGAAGATGAAGACCAG < 41bp 0.669451936077249 0.869909060988932 0.24871051 0.43648806 prediction 0.400914249823365 Functional Gain - SOAT1 ENSG00000057252 CDS Human protein_coding chr1:179271877 chr1:179271879 synonymous SNV . 0 23 hm5C_associated_SNPs_129631 0 0 1 0 2 SOAT1 chr1:179271937 5'GT 179271937 Upstream 59bp
chr10 89692996 89692996 1 + C G UCEC 89692995 + 89692975 89693015 41 TTTCTATGGGGAAGTAAGGACCAGAGACAAAAAGGTAAGTT TTTCTATGGGGAAGTAAGGACGAGAGACAAAAAGGTAAGTT < 41bp 0.396825711432894 0.700449354234809 0.34865016 0.5921411 prediction 0.400898708469618 Functional Gain - PTEN ENSG00000171862 CDS Human protein_coding chr10:89692995 chr10:89692996 synonymous SNV . 0 22 hm5C_associated_SNPs_129635 0 0 1 0 1 PTEN chr10:89693008 5'GT 89693008 Upstream 13bp
chr1 32751144 32751144 1 + C G LUAD 32751143 + 32751123 32751163 41 AACCCGGAGGTGATTCAGAACCTGGAGCGAGGCTACCGCAT AACCCGGAGGTGATTCAGAACGTGGAGCGAGGCTACCGCAT < 41bp 0.377279851241929 0.700446674831514 0.18387625 0.39755234 prediction 0.400893349663029 Functional Gain - LCK ENSG00000182866 CDS Human protein_coding chr1:32751143 chr1:32751144 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_129637 0 0 0 0 1 LCK chr1:32751115 3'AG 32751115 Downstream 30bp
chr6 41318505 41318505 1 + C T SKCM 41318504 + 41318484 41318524 41 TTCAACAGGTCACGGACCTTCCCTGGACCTCAGTTTCCTCA TTCAACAGGTCACGGACCTTCTCTGGACCTCAGTTTCCTCA < 41bp 0.463116914757985 0.700425140324816 0.055265605 0.050814956 prediction 0.400850280649632 Functional Gain - NCR2 ENSG00000096264 CDS Human protein_coding chr6:41318504 chr6:41318505 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_129648 0 0 0 0 1 NCR2 chr6:41318416 3'AG 41318416 Downstream 90bp
chr19 46257954 46257954 1 + C T rs117739601 46257953 + 46257933 46257973 41 GCTGACGCTGTTGGATCTGGCCGAGGACACCATCCACTGTG GCTGACGCTGTTGGATCTGGCTGAGGACACCATCCACTGTG < 41bp 0.576904191234658 0.777329138196826 0.31368783 0.15267068 prediction 0.400849893924336 Functional Gain - BHMG1 ENSG00000237452 CDS Human protein_coding chr19:46257953 chr19:46257954 synonymous SNV . 0 22 hm5C_associated_SNPs_129649 0 0 0 0 1 BHMG1 chr19:46257982 5'GT 46257982 Upstream 29bp
chr7 2415160 2415160 1 + A G SARC 2415157 + 2415137 2415177 41 CCTCTGTGTCCTGGTGGAGCCATAAGGTGCAGGCCTGTGGG CCTCTGTGTCCTGGTGGAGCCATGAGGTGCAGGCCTGTGGG < 41bp 0.453778583027877 0.700424770441377 0.406169 0.38972756 prediction 0.400849540882755 Functional Gain - EIF3B ENSG00000106263 CDS Human protein_coding chr7:2415157 chr7:2415160 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_129651 0 0 1 0 1 EIF3B chr7:2415162 5'GT 2415162 Upstream 3bp
chr1 107683715 107683715 1 + C A rs72979530 107683714 + 107683694 107683734 41 TCCCCCTCTGGGTGCGGGCTCCGAGAGGGGGCGACTTGCAG TCCCCCTCTGGGTGCGGGCTCAGAGAGGGGGCGACTTGCAG < 41bp 0.479574382451729 0.70042407137282 0.75367975 0.8671405 prediction 0.40084814274564 Functional Gain - NTNG1 ENSG00000162631 UTR5 Human protein_coding chr1:107683714 chr1:107683715 . . 0 22 hm5C_associated_SNPs_129652 0 0 0 0 1 NTNG1 chr1:107683762 5'GT 107683762 Upstream 48bp
chr10 7844255 7844255 1 + T C rs141298924 7844252 + 7844232 7844272 41 GACAGCATGAGTATCTATGACGATATTGATGCTGACGTGCT GACAGCATGAGTATCTATGACGACATTGATGCTGACGTGCT < 41bp 0.588796769986572 0.789216719073589 0.047427446 0.06498709 prediction 0.400839898174033 Functional Gain - ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7844252 chr10:7844255 synonymous SNV . 0 24 hm5C_associated_SNPs_129655 0 0 1 0 1 ATP5C1 chr10:7844233 3'AG 7844233 Downstream 23bp
chr16 27445713 27445713 1 + C A HNSC 27445709 + 27445689 27445729 41 TCTGCTACACCGATTACCTCCAGACGGTCATCTGCATCCTG TCTGCTACACCGATTACCTCCAGAAGGTCATCTGCATCCTG < 41bp 0.287447967422301 0.700416401393418 0.90351474 0.7668525 prediction 0.400832802786836 Functional Gain - IL21R ENSG00000103522 CDS Human protein_coding chr16:27445709 chr16:27445713 nonsynonymous SNV 0.054 5 25 hm5C_associated_SNPs_129658 0 0 0 0 2 IL21R chr16:27445668 3'AG 27445668 Downstream 46bp
chr16 27445713 27445713 1 + C A HNSC 27445709 + 27445689 27445729 41 TCTGCTACACCGATTACCTCCAGACGGTCATCTGCATCCTG TCTGCTACACCGATTACCTCCAGAAGGTCATCTGCATCCTG < 41bp 0.287447967422301 0.700416401393418 0.90351474 0.7668525 prediction 0.400832802786836 Functional Gain - IL21R ENSG00000103522 CDS Human protein_coding chr16:27445709 chr16:27445713 nonsynonymous SNV 0.054 5 25 hm5C_associated_SNPs_129658 0 0 0 0 2 IL21R chr16:27445770 5'GT 27445770 Upstream 58bp
chrX 123504043 123504043 1 + T C UCEC 123504041 + 123504021 123504061 41 TCCAGACAGCACCTGGGGTACATAAAAGATATTTCCGGAAA TCCAGACAGCACCTGGGGTACACAAAAGATATTTCCGGAAA < 41bp 0.41822108979333 0.700416198791851 0.20363408 0.117730945 prediction 0.400832397583701 Functional Gain - SH2D1A ENSG00000183918 CDS Human protein_coding chrX:123504041 chrX:123504043 synonymous SNV . 0 23 hm5C_associated_SNPs_129659 0 0 0 0 1 SH2D1A chrX:123504026 3'AG 123504026 Downstream 18bp
chr11 212445 212445 1 + C T ESCA 212444 + 212424 212464 41 GCTGAAGGAGAGTGTAGCTCCCGTGCTGAGCGTGCTGACTG GCTGAAGGAGAGTGTAGCTCCTGTGCTGAGCGTGCTGACTG < 41bp 0.446792636720038 0.700413593480847 0.14163801 0.13759065 prediction 0.400827186961693 Functional Gain - RIC8A ENSG00000177963 CDS Human protein_coding chr11:212444 chr11:212445 synonymous SNV . 0 22 hm5C_associated_SNPs_129660 0 0 1 0 2 RIC8A chr11:212416 3'AG 212416 Downstream 30bp
chr11 212445 212445 1 + C T ESCA 212444 + 212424 212464 41 GCTGAAGGAGAGTGTAGCTCCCGTGCTGAGCGTGCTGACTG GCTGAAGGAGAGTGTAGCTCCTGTGCTGAGCGTGCTGACTG < 41bp 0.446792636720038 0.700413593480847 0.14163801 0.13759065 prediction 0.400827186961693 Functional Gain - RIC8A ENSG00000177963 CDS Human protein_coding chr11:212444 chr11:212445 synonymous SNV . 0 22 hm5C_associated_SNPs_129660 0 0 1 0 2 RIC8A chr11:212511 5'GT 212511 Upstream 67bp
chr1 155582074 155582074 1 + C T HNSC 155582073 + 155582053 155582093 41 TTCAGGGCGGGGAATAATAACCTGGGGCCTGCTACCTGGTC TTCAGGGCGGGGAATAATAACTTGGGGCCTGCTACCTGGTC < 41bp 0.446279936150932 0.700412068921165 0.45468605 0.37748796 prediction 0.400824137842331 Functional Gain - MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582073 chr1:155582074 synonymous SNV . 0 22 hm5C_associated_SNPs_129661 0 0 1 0 1 MSTO1 chr1:155582107 5'GT 155582107 Upstream 34bp
chr10 94835603 94835603 1 + C T UCEC 94835602 + 94835582 94835622 41 GGCACTAAAGCAATCTTCAACCGAACTCCTCTTTGGAGGAC GGCACTAAAGCAATCTTCAACTGAACTCCTCTTTGGAGGAC < 41bp 0.435032345449194 0.700408324280053 0.18099174 0.18546432 prediction 0.400816648560106 Functional Gain - CYP26A1 ENSG00000095596 CDS Human protein_coding chr10:94835602 chr10:94835603 synonymous SNV . 0 22 hm5C_associated_SNPs_129663 0 0 0 0 1 CYP26A1 chr10:94835583 3'AG 94835583 Downstream 21bp
chr16 31500483 31500483 1 + C A UCEC 31500482 + 31500462 31500502 41 ATCGGGGGCCTGCTGATGGGCCTGGCACGCCTGATTCCCGA ATCGGGGGCCTGCTGATGGGCATGGCACGCCTGATTCCCGA < 41bp 0.435434371967526 0.700406311850919 0.08761677 0.1456868 prediction 0.400812623701838 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500482 chr16:31500483 nonsynonymous SNV 0.962 2 22 hm5C_associated_SNPs_129665 0 0 0 0 1 SLC5A2 chr16:31500444 3'AG 31500444 Downstream 40bp
chr9 120474743 120474743 1 + C A LUAD 120474742 + 120474722 120474762 41 ACCTTAATATTGACAGGAAACCCCATCCAGAGTTTAGCCCT ACCTTAATATTGACAGGAAACACCATCCAGAGTTTAGCCCT < 41bp 0.637668289614276 0.838064239155766 0.12217304 0.042475402 prediction 0.400791899082981 Functional Gain - TLR4 ENSG00000136869 CDS Human protein_coding chr9:120474742 chr9:120474743 nonsynonymous SNV 0.983 4 22 hm5C_associated_SNPs_129667 0 0 0 0 1 TLR4 chr9:120474667 3'AG 120474667 Downstream 77bp
chr1 227834313 227834313 1 + C A LUSC 227834309 + 227834289 227834329 41 GGAGTGGGCATGCCTGGACCCTGCCCAGCGAAATTTGTATA GGAGTGGGCATGCCTGGACCCTGCACAGCGAAATTTGTATA < 41bp 0.359141680296771 0.700394625695923 0.036798716 0.089434594 prediction 0.400789251391845 Functional Gain - ZNF678 ENSG00000181450 CDS Human protein_coding chr1:227834309 chr1:227834313 synonymous SNV . 0 25 hm5C_associated_SNPs_129670 0 0 1 0 2 ZNF678 chr1:227834245 3'AG 227834245 Downstream 69bp
chr1 227834313 227834313 1 + C A LUSC 227834309 + 227834289 227834329 41 GGAGTGGGCATGCCTGGACCCTGCCCAGCGAAATTTGTATA GGAGTGGGCATGCCTGGACCCTGCACAGCGAAATTTGTATA < 41bp 0.359141680296771 0.700394625695923 0.036798716 0.089434594 prediction 0.400789251391845 Functional Gain - ZNF678 ENSG00000181450 CDS Human protein_coding chr1:227834309 chr1:227834313 synonymous SNV . 0 25 hm5C_associated_SNPs_129670 0 0 1 0 2 ZNF678 chr1:227834371 5'GT 227834371 Upstream 59bp
chr13 27847220 27847220 1 + C T rs36053943 27847219 + 27847199 27847239 41 GTCCAAATGCGTGCAGTGGGCCGAGGGTTTTCTGCTGGTCT GTCCAAATGCGTGCAGTGGGCTGAGGGTTTTCTGCTGGTCT < 41bp 0.465662297248512 0.700392984548972 0.39138687 0.2553481 prediction 0.400785969097944 Functional Gain - RASL11A ENSG00000122035 CDS Human protein_coding chr13:27847219 chr13:27847220 synonymous SNV . 0 22 hm5C_associated_SNPs_129672 0 0 1 0 1 RASL11A chr13:27847164 3'AG 27847164 Downstream 57bp
chr19 49714835 49714835 1 + C T rs75615609 49714834 + 49714814 49714854 41 GCTCATCTGGGCCTCGGCCCCCGCACCTGGTGGCCTTGTCC GCTCATCTGGGCCTCGGCCCCTGCACCTGGTGGCCTTGTCC < 41bp 0.603654634619929 0.804046311378804 0.13658664 0.35139528 prediction 0.40078335351775 Functional Gain - TRPM4 ENSG00000130529 UTR3 Human protein_coding chr19:49714834 chr19:49714835 . . 0 22 hm5C_associated_SNPs_129673 0 0 0 0 1 TRPM4 chr19:49714751 3'AG 49714751 Downstream 85bp
chr15 30396177 30396177 1 + C T UCEC 30396176 + 30396156 30396196 41 TCTTCCAGGAGAACCAGGAGCCACAGCCGCGGCTCACGCCC TCTTCCAGGAGAACCAGGAGCTACAGCCGCGGCTCACGCCC < 41bp 0.588818846928552 0.789209684769902 0.35696948 0.9249395 prediction 0.4007816756827 Functional Gain - ULK4P3 ENSG00000178081 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:30396176 chr15:30396177 . . 0 22 hm5C_associated_SNPs_129674 0 0 0 0 1 ULK4P3 chr15:30396211 5'GT 30396211 Upstream 35bp
chr14 74036526 74036526 1 + C A UCEC 74036525 + 74036505 74036545 41 CGAGCGCTACTTCCTCCCGCCCGGGGTGCGGCGCGAGCCGG CGAGCGCTACTTCCTCCCGCCAGGGGTGCGGCGCGAGCCGG < 41bp 0.637578699057693 0.837965349399805 0.9130226 0.9225701 prediction 0.400773300684225 Functional Gain - ACOT2 ENSG00000119673 CDS Human protein_coding chr14:74036525 chr14:74036526 synonymous SNV . 0 22 hm5C_associated_SNPs_129677 0 0 1 0 1 ACOT2 chr14:74036587 5'GT 74036587 Upstream 62bp
chr14 24607580 24607580 1 + T C UCEC 24607577 + 24607557 24607597 41 TTTCTCTGAGCGTGGTGATGCAGTGACTAAAGCAGCCAAGC TTTCTCTGAGCGTGGTGATGCAGCGACTAAAGCAGCCAAGC < 41bp 0.550317844573224 0.750696870659948 0.3851373 0.40831405 prediction 0.400758052173447 Functional Gain - PSME1 ENSG00000092010 CDS Human protein_coding chr14:24607577 chr14:24607580 nonsynonymous SNV 0.892 3 24 hm5C_associated_SNPs_129681 0 0 1 0 2 PSME1 chr14:24607554 3'AG 24607554 Downstream 27bp
chr14 24607580 24607580 1 + T C UCEC 24607577 + 24607557 24607597 41 TTTCTCTGAGCGTGGTGATGCAGTGACTAAAGCAGCCAAGC TTTCTCTGAGCGTGGTGATGCAGCGACTAAAGCAGCCAAGC < 41bp 0.550317844573224 0.750696870659948 0.3851373 0.40831405 prediction 0.400758052173447 Functional Gain - PSME1 ENSG00000092010 CDS Human protein_coding chr14:24607577 chr14:24607580 nonsynonymous SNV 0.892 3 24 hm5C_associated_SNPs_129681 0 0 1 0 2 PSME1 chr14:24607608 5'GT 24607608 Upstream 29bp
chr8 22471738 22471738 1 + C T COAD 22471737 + 22471717 22471757 41 TTTTCCCTCCATCATCCAAGCCGGATCCAGGTCTCTTCTGA TTTTCCCTCCATCATCCAAGCTGGATCCAGGTCTCTTCTGA < 41bp 0.647650944820308 0.848029946081958 0.37289584 0.26063347 prediction 0.4007580025233 Functional Gain - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22471737 chr8:22471738 nonsynonymous SNV 0.981 4 22 hm5C_associated_SNPs_129682 0 0 1 0 1 CCAR2 chr8:22471827 5'GT 22471827 Upstream 90bp
chr20 20177385 20177385 1 + T G BLCA 20177382 + 20177362 20177402 41 GTTTAGGCTTTAAATCCTGTCTCTACTACCGTGTTTACCCA GTTTAGGCTTTAAATCCTGTCTCGACTACCGTGTTTACCCA < 41bp 0.330838284490135 0.700378656418915 0.7276665 0.4103668 prediction 0.400757312837829 Functional Gain - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20177382 chr20:20177385 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_129683 0 0 0 0 1 CFAP61 chr20:20177420 5'GT 20177420 Upstream 36bp
chr9 35805956 35805956 1 + T C SKCM 35805954 + 35805934 35805974 41 CTTCGCAGTGGTCCTTTCTACTTGGAGGGCCTGGACCTCAG CTTCGCAGTGGTCCTTTCTACTCGGAGGGCCTGGACCTCAG < 41bp 0.682738423712949 0.883109815234775 0.27582186 0.7122045 prediction 0.400742783043653 Functional Gain - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35805954 chr9:35805956 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_129686 0 0 0 0 1 NPR2 chr9:35805982 5'GT 35805982 Upstream 27bp
chr16 1825080 1825080 1 + C T PRAD 1825079 + 1825059 1825099 41 CTGGGTGCCCTGGATCTCCCCCGAGACCACCGCCCGGCCCC CTGGGTGCCCTGGATCTCCCCTGAGACCACCGCCCGGCCCC < 41bp 0.591765965136744 0.792135673698717 0.92195296 0.89444715 prediction 0.400739417123946 Functional Gain - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825079 chr16:1825080 synonymous SNV . 0 22 hm5C_associated_SNPs_129688 0 0 1 0 2 EME2 chr16:1825042 3'AG 1825042 Downstream 39bp
chr16 1825080 1825080 1 + C T PRAD 1825079 + 1825059 1825099 41 CTGGGTGCCCTGGATCTCCCCCGAGACCACCGCCCGGCCCC CTGGGTGCCCTGGATCTCCCCTGAGACCACCGCCCGGCCCC < 41bp 0.591765965136744 0.792135673698717 0.92195296 0.89444715 prediction 0.400739417123946 Functional Gain - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825079 chr16:1825080 synonymous SNV . 0 22 hm5C_associated_SNPs_129688 0 0 1 0 2 EME2 chr16:1825133 5'GT 1825133 Upstream 54bp
chr19 20216123 20216123 1 + C A LIHC 20216122 + 20216102 20216142 41 ATGAGATGATTGCCAAATCCCCAGGTAGGTGCGAGTGAAAA ATGAGATGATTGCCAAATCCCAAGGTAGGTGCGAGTGAAAA < 41bp 0.434648984075564 0.700363439862879 0.2582881 0.40267217 prediction 0.400726879725758 Functional Gain - ZNF90 ENSG00000213988 CDS Human protein_coding chr19:20216122 chr19:20216123 nonsynonymous SNV 0.002 2 22 hm5C_associated_SNPs_129690 0 0 0 0 2 ZNF90 chr19:20216030 3'AG 20216030 Downstream 94bp
chr19 20216123 20216123 1 + C A LIHC 20216122 + 20216102 20216142 41 ATGAGATGATTGCCAAATCCCCAGGTAGGTGCGAGTGAAAA ATGAGATGATTGCCAAATCCCAAGGTAGGTGCGAGTGAAAA < 41bp 0.434648984075564 0.700363439862879 0.2582881 0.40267217 prediction 0.400726879725758 Functional Gain - ZNF90 ENSG00000213988 CDS Human protein_coding chr19:20216122 chr19:20216123 nonsynonymous SNV 0.002 2 22 hm5C_associated_SNPs_129690 0 0 0 0 2 ZNF90 chr19:20216125 5'GT 20216125 Upstream 3bp
chr14 24647373 24647373 1 + T G LUSC 24647369 + 24647349 24647389 41 TGTTCTGGGACAAGGAGACTCAGATCTCCCCGGAGAAATTC TGTTCTGGGACAAGGAGACTCAGAGCTCCCCGGAGAAATTC < 41bp 0.549440790713815 0.749800471396211 0.7451434 0.8537383 prediction 0.400719361364791 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24647369 chr14:24647373 nonsynonymous SNV 0.991 3 25 hm5C_associated_SNPs_129693 0 0 1 0 2 REC8 chr14:24647297 3'AG 24647297 Downstream 77bp
chr14 24647373 24647373 1 + T G LUSC 24647369 + 24647349 24647389 41 TGTTCTGGGACAAGGAGACTCAGATCTCCCCGGAGAAATTC TGTTCTGGGACAAGGAGACTCAGAGCTCCCCGGAGAAATTC < 41bp 0.549440790713815 0.749800471396211 0.7451434 0.8537383 prediction 0.400719361364791 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24647369 chr14:24647373 nonsynonymous SNV 0.991 3 25 hm5C_associated_SNPs_129693 0 0 1 0 2 REC8 chr14:24647428 5'GT 24647428 Upstream 56bp
chr12 52448961 52448961 1 + A G STAD 52448958 + 52448938 52448978 41 TGCCAGCATTATGGTGTCCGCACATGTGAGGGCTGCAAGGG TGCCAGCATTATGGTGTCCGCACGTGTGAGGGCTGCAAGGG < 41bp 0.44393505018814 0.700357300440527 0.14721414 0.23523173 prediction 0.400714600881054 Functional Gain - NR4A1 ENSG00000123358 CDS Human protein_coding chr12:52448958 chr12:52448961 synonymous SNV . 0 24 hm5C_associated_SNPs_129694 0 0 1 0 1 NR4A1 chr12:52448988 5'GT 52448988 Upstream 28bp
chr8 92350457 92350457 1 + A G UCEC 92350454 + 92350434 92350474 41 AGAAGTAGTTGGTCATATTCCACAAGGGTAATGTAGTCCTT AGAAGTAGTTGGTCATATTCCACGAGGGTAATGTAGTCCTT < 41bp 0.569223470006704 0.769580472315402 0.042761266 0.2234261 prediction 0.400714004617397 Functional Gain - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92350454 chr8:92350457 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_129695 0 0 0 0 1 SLC26A7 chr8:92350378 3'AG 92350378 Downstream 80bp
chr11 71850684 71850684 1 + C T SKCM 71850683 + 71850663 71850703 41 AGCACCTTTGAGTCCTACTTCCCCACTCCAGCCGCCCTTTG AGCACCTTTGAGTCCTACTTCTCCACTCCAGCCGCCCTTTG < 41bp 0.651024844076806 0.851376845271983 0.021377414 0.90379614 prediction 0.400704002390353 Functional Gain - FOLR3 ENSG00000110203 CDS Human protein_coding chr11:71850683 chr11:71850684 nonsynonymous SNV 0.706 2 22 hm5C_associated_SNPs_129696 0 0 0 0 1 FOLR3 chr11:71850631 3'AG 71850631 Downstream 54bp
chr17 38249332 38249332 1 + C A LUSC 38249328 + 38249308 38249348 41 GGCAGCGGCAGAAGGCCGGCCGGGCGGGTCACTGGGCGTCC GGCAGCGGCAGAAGGCCGGCCGGGAGGGTCACTGGGCGTCC < 41bp 0.739359691791605 0.939711063967673 0.8953776 0.88573265 prediction 0.400702744352137 Functional Gain - THRA ENSG00000126351 CDS Human protein_coding chr17:38249328 chr17:38249332 synonymous SNV . 0 25 hm5C_associated_SNPs_129697 0 0 1 0 1 THRA chr17:38249273 3'AG 38249273 Downstream 60bp
chr1 151262933 151262933 1 + T G UCEC 151262929 + 151262909 151262949 41 TATTGCACAGAGGGAAAACGCACCTTCAGCAGCCGCCTGAT TATTGCACAGAGGGAAAACGCACCGTCAGCAGCCGCCTGAT < 41bp 0.52749060382324 0.727825499014337 0.068062484 0.2527256 prediction 0.400669790382195 Functional Gain - ZNF687 ENSG00000143373 CDS Human protein_coding chr1:151262929 chr1:151262933 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_129702 0 0 0 0 2 ZNF687 chr1:151262847 3'AG 151262847 Downstream 87bp
chr1 151262933 151262933 1 + T G UCEC 151262929 + 151262909 151262949 41 TATTGCACAGAGGGAAAACGCACCTTCAGCAGCCGCCTGAT TATTGCACAGAGGGAAAACGCACCGTCAGCAGCCGCCTGAT < 41bp 0.52749060382324 0.727825499014337 0.068062484 0.2527256 prediction 0.400669790382195 Functional Gain - ZNF687 ENSG00000143373 CDS Human protein_coding chr1:151262929 chr1:151262933 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_129702 0 0 0 0 2 ZNF687 chr1:151262908 3'AG 151262908 Downstream 26bp
chr4 75311091 75311091 1 + C G rs376784024 75311090 + 75311070 75311110 41 CCCCGCTGCTACCGCCGGCGCCGGTGGTGCTGTCGCTCTTG CCCCGCTGCTACCGCCGGCGCGGGTGGTGCTGTCGCTCTTG < 41bp 0.695132152880482 0.895459469874411 0.87944716 0.8952968 prediction 0.400654633987857 Functional Gain - AREG ENSG00000109321 CDS Human protein_coding chr4:75311090 chr4:75311091 nonsynonymous SNV 0.027 0 22 hm5C_associated_SNPs_129703 0 0 0 0 1 AREG chr4:75311123 5'GT 75311123 Upstream 33bp
chr19 48956004 48956004 1 + C T HNSC 48956003 + 48955983 48956023 41 ACCTTCAAGCAGCACGTGGCCCCCGTGACCTCCGTCGAGTG ACCTTCAAGCAGCACGTGGCCTCCGTGACCTCCGTCGAGTG < 41bp 0.439169642524804 0.700311227758418 0.13018376 0.11354244 prediction 0.400622455516836 Functional Gain - GRWD1 ENSG00000105447 CDS Human protein_coding chr19:48956003 chr19:48956004 nonsynonymous SNV 0.949 4 22 hm5C_associated_SNPs_129706 0 0 1 0 1 GRWD1 chr19:48955965 3'AG 48955965 Downstream 40bp
chr10 91143169 91143169 1 + T A LUSC 91143167 + 91143147 91143187 41 TAATTGAAGCCCCTGAAATTCCTGATTTAGAAAACAGGATC TAATTGAAGCCCCTGAAATTCCAGATTTAGAAAACAGGATC < 41bp 0.48984798855459 0.700293780406094 0.12816355 0.20244068 prediction 0.400587560812189 Functional Gain - IFIT1B ENSG00000204010 CDS Human protein_coding chr10:91143167 chr10:91143169 synonymous SNV . 0 23 hm5C_associated_SNPs_129717 0 0 0 0 1 IFIT1B chr10:91143076 3'AG 91143076 Downstream 94bp
chr20 36932694 36932694 1 + C A LUAD 36932693 + 36932673 36932713 41 GCTGGTCGCCATAGGCACCGCCGTGACAGCGGCCGTCAACC GCTGGTCGCCATAGGCACCGCAGTGACAGCGGCCGTCAACC < 41bp 0.433571759754494 0.700293469656811 0.13342151 0.10932076 prediction 0.400586939313621 Functional Gain - BPI ENSG00000101425 CDS Human protein_coding chr20:36932693 chr20:36932694 synonymous SNV . 0 22 hm5C_associated_SNPs_129718 0 0 0 0 1 BPI chr20:36932755 5'GT 36932755 Upstream 62bp
chr19 41268813 41268813 1 + C T UCEC 41268812 + 41268792 41268832 41 CCCTCTCTCCACAGGGCATGCCGCCGATGACTCAGGCGCCC CCCTCTCTCCACAGGGCATGCTGCCGATGACTCAGGCGCCC < 41bp 0.454590771260148 0.700292525711296 0.23893791 0.26596892 prediction 0.400585051422593 Functional Gain - SNRPA ENSG00000077312 CDS Human protein_coding chr19:41268812 chr19:41268813 nonsynonymous SNV 0.590 3 22 hm5C_associated_SNPs_129721 0 0 1 0 1 SNRPA chr19:41268806 3'AG 41268806 Downstream 8bp
chr7 98972353 98972353 1 + A G rs528777918 98972350 + 98972330 98972370 41 GCTGCTGCTCCGGCGCGGAGCCCAGAGCCGGTTCGGCGCGT GCTGCTGCTCCGGCGCGGAGCCCGGAGCCGGTTCGGCGCGT < 41bp 0.577073164455388 0.777364874443392 0.5409734 0.85680443 prediction 0.400583419976007 Functional Gain - ARPC1B ENSG00000130429 UTR5 Human protein_coding chr7:98972350 chr7:98972353 . . 0 24 hm5C_associated_SNPs_129722 0 0 1 0 1 ARPC1B chr7:98972404 5'GT 98972404 Upstream 52bp
chr1 55148375 55148375 1 + T G SKCM 55148371 + 55148351 55148391 41 CAGCTGATACTGTGTAAGCCCAGCTGTGATGTCCGAGACCT CAGCTGATACTGTGTAAGCCCAGCGGTGATGTCCGAGACCT < 41bp 0.554057835577275 0.754346301195329 0.4942556 0.7329057 prediction 0.400576931236109 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55148371 chr1:55148375 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_129726 0 0 0 0 1 MROH7 chr1:55148467 5'GT 55148467 Upstream 93bp
chr1 152659386 152659386 1 + A G UCEC 152659383 + 152659363 152659403 41 AGTGTCCTCCCAAGTGTACCCCAAAATGTCCACCTAAGTGT AGTGTCCTCCCAAGTGTACCCCAGAATGTCCACCTAAGTGT < 41bp 0.629587345071388 0.829875051700874 0.11113927 0.16107306 prediction 0.400575413258972 Functional Gain - LCE2B ENSG00000159455 CDS Human protein_coding chr1:152659383 chr1:152659386 nonsynonymous SNV 0.079 3 24 hm5C_associated_SNPs_129727 0 0 0 0 1 LCE2B chr1:152659300 3'AG 152659300 Downstream 87bp
chr11 63990575 63990575 1 + C T LUAD 63990574 + 63990554 63990594 41 ATCGCCAACAACCGACTGATCCGCATCGACTTGGCCGTGGG ATCGCCAACAACCGACTGATCTGCATCGACTTGGCCGTGGG < 41bp 0.660154278410414 0.860441489012651 0.035426766 0.2788222 prediction 0.400574421204473 Functional Gain - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63990574 chr11:63990575 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_129728 0 0 0 0 2 FERMT3 chr11:63990520 3'AG 63990520 Downstream 56bp
chr11 63990575 63990575 1 + C T LUAD 63990574 + 63990554 63990594 41 ATCGCCAACAACCGACTGATCCGCATCGACTTGGCCGTGGG ATCGCCAACAACCGACTGATCTGCATCGACTTGGCCGTGGG < 41bp 0.660154278410414 0.860441489012651 0.035426766 0.2788222 prediction 0.400574421204473 Functional Gain - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63990574 chr11:63990575 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_129728 0 0 0 0 2 FERMT3 chr11:63990661 5'GT 63990661 Upstream 87bp
chr16 77769815 77769815 1 + C A LUSC 77769814 + 77769794 77769834 41 GCCACAGCTCTCCGGGAAGCCCAGGAGGAAGTGGGTCTCCG GCCACAGCTCTCCGGGAAGCCAAGGAGGAAGTGGGTCTCCG < 41bp 0.63939059329953 0.839665317301962 0.74523574 0.81012523 prediction 0.400549448004865 Functional Gain - NUDT7 ENSG00000140876 CDS Human protein_coding chr16:77769814 chr16:77769815 nonsynonymous SNV 0.993 1 22 hm5C_associated_SNPs_129734 0 0 0 0 2 NUDT7 chr16:77769725 3'AG 77769725 Downstream 91bp
chr16 77769815 77769815 1 + C A LUSC 77769814 + 77769794 77769834 41 GCCACAGCTCTCCGGGAAGCCCAGGAGGAAGTGGGTCTCCG GCCACAGCTCTCCGGGAAGCCAAGGAGGAAGTGGGTCTCCG < 41bp 0.63939059329953 0.839665317301962 0.74523574 0.81012523 prediction 0.400549448004865 Functional Gain - NUDT7 ENSG00000140876 CDS Human protein_coding chr16:77769814 chr16:77769815 nonsynonymous SNV 0.993 1 22 hm5C_associated_SNPs_129734 0 0 0 0 2 NUDT7 chr16:77769883 5'GT 77769883 Upstream 69bp
chr3 32483464 32483464 1 + C T UCEC 32483463 + 32483443 32483483 41 TTTTACCTGGTCCACCTCTTCCGCTTCTACCGCGTGCTCAC TTTTACCTGGTCCACCTCTTCTGCTTCTACCGCGTGCTCAC < 41bp 0.437142027046503 0.700270067169022 0.049673706 0.047117233 prediction 0.400540134338044 Functional Gain - CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32483463 chr3:32483464 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_129736 0 0 1 0 1 CMTM7 chr3:32483505 5'GT 32483505 Upstream 42bp
chr3 102189292 102189292 1 + C T LUSC 102189291 + 102189271 102189311 41 AGGAGGACGACTTGGAGCCCCCAGAGCTCTTCTGGCAGCGC AGGAGGACGACTTGGAGCCCCTAGAGCTCTTCTGGCAGCGC < 41bp 0.634860938150793 0.835126016773867 0.3237434 0.29374468 prediction 0.400530157246148 Functional Gain - ZPLD1 ENSG00000170044 CDS Human protein_coding chr3:102189291 chr3:102189292 stopgain 0.009 0 22 hm5C_associated_SNPs_129737 0 0 0 0 2 ZPLD1 chr3:102189238 3'AG 102189238 Downstream 55bp
chr3 102189292 102189292 1 + C T LUSC 102189291 + 102189271 102189311 41 AGGAGGACGACTTGGAGCCCCCAGAGCTCTTCTGGCAGCGC AGGAGGACGACTTGGAGCCCCTAGAGCTCTTCTGGCAGCGC < 41bp 0.634860938150793 0.835126016773867 0.3237434 0.29374468 prediction 0.400530157246148 Functional Gain - ZPLD1 ENSG00000170044 CDS Human protein_coding chr3:102189291 chr3:102189292 stopgain 0.009 0 22 hm5C_associated_SNPs_129737 0 0 0 0 2 ZPLD1 chr3:102189346 5'GT 102189346 Upstream 55bp
chr17 21201777 21201777 1 + C G LUAD 21201773 + 21201753 21201793 41 GATATCCTGCATGTCCAAGCCACCCGCACCCAACCCCACGT GATATCCTGCATGTCCAAGCCACCGGCACCCAACCCCACGT < 41bp 0.398419602227655 0.700263830483054 0.10326156 0.20362598 prediction 0.400527660966108 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21201773 chr17:21201777 synonymous SNV . 0 25 hm5C_associated_SNPs_129739 0 0 0 0 2 MAP2K3 chr17:21201725 3'AG 21201725 Downstream 53bp
chr17 21201777 21201777 1 + C G LUAD 21201773 + 21201753 21201793 41 GATATCCTGCATGTCCAAGCCACCCGCACCCAACCCCACGT GATATCCTGCATGTCCAAGCCACCGGCACCCAACCCCACGT < 41bp 0.398419602227655 0.700263830483054 0.10326156 0.20362598 prediction 0.400527660966108 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21201773 chr17:21201777 synonymous SNV . 0 25 hm5C_associated_SNPs_129739 0 0 0 0 2 MAP2K3 chr17:21201791 5'GT 21201791 Upstream 15bp
chr17 38324465 38324465 1 + C T UCEC 38324464 + 38324444 38324484 41 CTCCTTATCCAGGTTTACATCCCCACCAGACACCAGCTCCT CTCCTTATCCAGGTTTACATCTCCACCAGACACCAGCTCCT < 41bp 0.418456823036512 0.700260182181129 0.11554474 0.9425015 prediction 0.400520364362259 Functional Gain - CASC3 ENSG00000108349 CDS Human protein_coding chr17:38324464 chr17:38324465 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_129741 0 0 1 0 1 CASC3 chr17:38324456 3'AG 38324456 Downstream 10bp
chr1 77509973 77509973 1 + C A HNSC 77509972 + 77509952 77509992 41 CGGCAAGGCTCCCAGATTGACCAGACAGAGTGTGTCATCCG CGGCAAGGCTCCCAGATTGACAAGACAGAGTGTGTCATCCG < 41bp 0.647720122431661 0.84797919898386 0.02532199 0.04463038 prediction 0.400518153104398 Functional Gain - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77509972 chr1:77509973 nonsynonymous SNV 0.990 1 22 hm5C_associated_SNPs_129743 0 0 0 1 1 ST6GALNAC5 chr1:77509889 3'AG 77509889 Downstream 85bp
chr5 77771419 77771419 1 + C T COAD 77771418 + 77771398 77771438 41 GTCCAACAAAACTGTCCAGACCGCAGCTGCAAATGCAGCTT GTCCAACAAAACTGTCCAGACTGCAGCTGCAAATGCAGCTT < 41bp 0.616145296388696 0.816401749419797 0.2730183 0.29145035 prediction 0.400512906062202 Functional Gain - SCAMP1 ENSG00000085365 CDS Human protein_coding chr5:77771418 chr5:77771419 synonymous SNV . 0 22 hm5C_associated_SNPs_129744 0 0 1 0 1 SCAMP1 chr5:77771327 3'AG 77771327 Downstream 93bp
chr3 179051102 179051102 1 + C T LUSC 179051101 + 179051081 179051121 41 GTGATGAAGAGTGTGACTCACCTGAATCAGTCAACCAGCAA GTGATGAAGAGTGTGACTCACTTGAATCAGTCAACCAGCAA < 41bp 0.453609908224457 0.700255544968802 0.108039826 0.17013088 prediction 0.400511089937603 Functional Gain - ZNF639 ENSG00000121864 CDS Human protein_coding chr3:179051101 chr3:179051102 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_129745 0 0 1 0 1 ZNF639 chr3:179051057 3'AG 179051057 Downstream 46bp
chr2 234854632 234854632 1 + C A THCA 234854631 + 234854611 234854651 41 CCCACTGTCGAAGCAAAGCTCCGGAATCAGCTAGAGAAGTA CCCACTGTCGAAGCAAAGCTCAGGAATCAGCTAGAGAAGTA < 41bp 0.654133067311607 0.854384231877639 0.81967616 0.9158902 prediction 0.400502329132066 Functional Gain - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234854631 chr2:234854632 synonymous SNV . 0 22 hm5C_associated_SNPs_129748 0 0 0 0 1 TRPM8 chr2:234854674 5'GT 234854674 Upstream 43bp
chr22 38352843 38352843 1 + C T PRAD 38352842 + 38352822 38352862 41 GCTAGATGACTTGGAGAATGCCGAAGAGGTCAGTATTCAGC GCTAGATGACTTGGAGAATGCTGAAGAGGTCAGTATTCAGC < 41bp 0.637247219187908 0.837494998602868 0.26966497 0.20904642 prediction 0.40049555882992 Functional Gain - POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352842 chr22:38352843 synonymous SNV . 0 22 hm5C_associated_SNPs_129750 0 0 1 0 3 POLR2F chr22:38352780 3'AG 38352780 Downstream 64bp
chr22 38352843 38352843 1 + C T PRAD 38352842 + 38352822 38352862 41 GCTAGATGACTTGGAGAATGCCGAAGAGGTCAGTATTCAGC GCTAGATGACTTGGAGAATGCTGAAGAGGTCAGTATTCAGC < 41bp 0.637247219187908 0.837494998602868 0.26966497 0.20904642 prediction 0.40049555882992 Functional Gain - POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352842 chr22:38352843 synonymous SNV . 0 22 hm5C_associated_SNPs_129750 0 0 1 0 3 POLR2F chr22:38352849 5'GT 38352849 Upstream 7bp
chr22 38352843 38352843 1 + C T PRAD 38352842 + 38352822 38352862 41 GCTAGATGACTTGGAGAATGCCGAAGAGGTCAGTATTCAGC GCTAGATGACTTGGAGAATGCTGAAGAGGTCAGTATTCAGC < 41bp 0.637247219187908 0.837494998602868 0.26966497 0.20904642 prediction 0.40049555882992 Functional Gain - POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352842 chr22:38352843 synonymous SNV . 0 22 hm5C_associated_SNPs_129750 0 0 1 0 3 POLR2F chr22:38352908 5'GT 38352908 Upstream 66bp
chr16 815565 815565 1 + T C rs77260498 815562 + 815542 815582 41 GTCTGTCTCCACGATGGACGCTCTGCGGGGCCTGCTGCCCG GTCTGTCTCCACGATGGACGCTCCGCGGGGCCTGCTGCCCG < 41bp 0.539799813203716 0.740046400325044 0.08469421 0.14490387 prediction 0.400493174242656 Functional Gain - MSLN ENSG00000102854 CDS Human protein_coding chr16:815562 chr16:815565 nonsynonymous SNV 0.143 3 24 hm5C_associated_SNPs_129751 0 0 0 0 2 MSLN chr16:815527 3'AG 815527 Downstream 39bp
chr16 815565 815565 1 + T C rs77260498 815562 + 815542 815582 41 GTCTGTCTCCACGATGGACGCTCTGCGGGGCCTGCTGCCCG GTCTGTCTCCACGATGGACGCTCCGCGGGGCCTGCTGCCCG < 41bp 0.539799813203716 0.740046400325044 0.08469421 0.14490387 prediction 0.400493174242656 Functional Gain - MSLN ENSG00000102854 CDS Human protein_coding chr16:815562 chr16:815565 nonsynonymous SNV 0.143 3 24 hm5C_associated_SNPs_129751 0 0 0 0 2 MSLN chr16:815617 5'GT 815617 Upstream 53bp
chrX 24512955 24512955 1 + C G HNSC 24512954 + 24512934 24512974 41 TGAGAGAAGTTAATCTTCTGCCGGATAATTTACTTAACCGC TGAGAGAAGTTAATCTTCTGCGGGATAATTTACTTAACCGC < 41bp 0.388254533432673 0.700246228555278 0.68431515 0.8665689 prediction 0.400492457110555 Functional Gain - PDK3 ENSG00000067992 CDS Human protein_coding chrX:24512954 chrX:24512955 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_129752 0 0 1 0 2 PDK3 chrX:24512859 3'AG 24512859 Downstream 97bp
chrX 24512955 24512955 1 + C G HNSC 24512954 + 24512934 24512974 41 TGAGAGAAGTTAATCTTCTGCCGGATAATTTACTTAACCGC TGAGAGAAGTTAATCTTCTGCGGGATAATTTACTTAACCGC < 41bp 0.388254533432673 0.700246228555278 0.68431515 0.8665689 prediction 0.400492457110555 Functional Gain - PDK3 ENSG00000067992 CDS Human protein_coding chrX:24512954 chrX:24512955 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_129752 0 0 1 0 2 PDK3 chrX:24513000 5'GT 24513000 Upstream 46bp
chr14 24838810 24838810 1 + C T SKCM 24838809 + 24838789 24838829 41 CCCGACCTCCACCCCCTCGGCCTGGCATGCATTCGCCACCG CCCGACCTCCACCCCCTCGGCTTGGCATGCATTCGCCACCG < 41bp 0.552446549918188 0.752690858794778 0.19761607 0.19935471 prediction 0.400488617753181 Functional Gain - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24838809 chr14:24838810 nonsynonymous SNV 0.984 1 22 hm5C_associated_SNPs_129754 0 0 1 0 1 NFATC4 chr14:24838876 5'GT 24838876 Upstream 67bp
chr19 4422787 4422787 1 + C T SKCM 4422786 + 4422766 4422806 41 GCGCAAGGAGAGACAGGAAGCCCTGGAGTGAGTGTCCTTGG GCGCAAGGAGAGACAGGAAGCTCTGGAGTGAGTGTCCTTGG < 41bp 0.454038660311325 0.700243797292391 0.24359807 0.16165695 prediction 0.400487594584783 Functional Gain - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4422786 chr19:4422787 synonymous SNV . 0 22 hm5C_associated_SNPs_129755 0 0 1 0 1 CHAF1A chr19:4422792 5'GT 4422792 Upstream 6bp
chr7 150761329 150761329 1 + C A UCEC 150761328 + 150761308 150761348 41 GCCCTGGGACGCCTGGGTTCCCCGAGCAGGAGGAAGACGAA GCCCTGGGACGCCTGGGTTCCACGAGCAGGAGGAAGACGAA < 41bp 0.647429930511298 0.847672388591147 0.32831353 0.20724145 prediction 0.400484916159699 Functional Gain - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150761328 chr7:150761329 nonsynonymous SNV 0.632 1 22 hm5C_associated_SNPs_129756 0 0 1 0 1 SLC4A2 chr7:150761289 3'AG 150761289 Downstream 41bp
chr10 101544402 101544402 1 + C A CHOL 101544398 + 101544378 101544418 41 TGGACAGTCCGGAGGCAGACCTGCCACTTTGTTTTGAGCAA TGGACAGTCCGGAGGCAGACCTGCAACTTTGTTTTGAGCAA < 41bp 0.268884349202202 0.700233911059547 0.038685024 0.18083417 prediction 0.400467822119093 Functional Gain - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101544398 chr10:101544402 nonsynonymous SNV 0.985 3 25 hm5C_associated_SNPs_129760 0 0 1 0 1 ABCC2 chr10:101544365 3'AG 101544365 Downstream 38bp
chr9 137982158 137982158 1 + C T STAD 137982157 + 137982137 137982177 41 ACCATGTGTTCACGGGATGCCCGCACAAAACAGCTGAGGCA ACCATGTGTTCACGGGATGCCTGCACAAAACAGCTGAGGCA < 41bp 0.459619058846561 0.700233773988084 0.119946 0.15948263 prediction 0.400467547976168 Functional Gain - OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137982157 chr9:137982158 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_129761 0 0 0 0 1 OLFM1 chr9:137982190 5'GT 137982190 Upstream 33bp
chr10 38647418 38647418 1 + C T LUAD 38647417 + 38647397 38647437 41 AGCAACCTGCAGTCATTCTTCCGGGCCTCCAAGGAACTTAA AGCAACCTGCAGTCATTCTTCTGGGCCTCCAAGGAACTTAA < 41bp 0.566064619578764 0.766295067177602 0.90973246 0.76071346 prediction 0.400460895197676 Functional Gain - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38647417 chr10:38647418 . . 0 22 hm5C_associated_SNPs_129763 0 0 1 0 1 HSD17B7P2 chr10:38647443 5'GT 38647443 Upstream 26bp
chr1 119964466 119964466 1 + C T STAD 119964465 + 119964445 119964485 41 GTTGGAGGCCTGTGTCCAAGCCAGTGTGCCAGTCTTCATCT GTTGGAGGCCTGTGTCCAAGCTAGTGTGCCAGTCTTCATCT < 41bp 0.555569849696188 0.755787937028289 0.6746228 0.15447369 prediction 0.400436174664203 Functional Gain - HSD3B2 ENSG00000203859 CDS Human protein_coding chr1:119964465 chr1:119964466 synonymous SNV . 0 22 hm5C_associated_SNPs_129768 0 0 0 0 1 HSD3B2 chr1:119964432 3'AG 119964432 Downstream 35bp
chr10 134940773 134940773 1 + C G BLCA 134940770 + 134940750 134940790 41 AGCGGAGGGGTCCCCTTTATCATCTGTGGGGTCACGGCTGC AGCGGAGGGGTCCCCTTTATCATGTGTGGGGTCACGGCTGC < 41bp 0.514812746896824 0.715028968211127 0.8940911 0.93456477 prediction 0.400432442628606 Functional Gain - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134940770 chr10:134940773 nonsynonymous SNV 0.981 3 24 hm5C_associated_SNPs_129771 0 0 0 0 3 ADGRA1 chr10:134940737 3'AG 134940737 Downstream 37bp
chr10 134940773 134940773 1 + C G BLCA 134940770 + 134940750 134940790 41 AGCGGAGGGGTCCCCTTTATCATCTGTGGGGTCACGGCTGC AGCGGAGGGGTCCCCTTTATCATGTGTGGGGTCACGGCTGC < 41bp 0.514812746896824 0.715028968211127 0.8940911 0.93456477 prediction 0.400432442628606 Functional Gain - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134940770 chr10:134940773 nonsynonymous SNV 0.981 3 24 hm5C_associated_SNPs_129771 0 0 0 0 3 ADGRA1 chr10:134940832 5'GT 134940832 Upstream 60bp
chr10 134940773 134940773 1 + C G BLCA 134940770 + 134940750 134940790 41 AGCGGAGGGGTCCCCTTTATCATCTGTGGGGTCACGGCTGC AGCGGAGGGGTCCCCTTTATCATGTGTGGGGTCACGGCTGC < 41bp 0.514812746896824 0.715028968211127 0.8940911 0.93456477 prediction 0.400432442628606 Functional Gain - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134940770 chr10:134940773 nonsynonymous SNV 0.981 3 24 hm5C_associated_SNPs_129771 0 0 0 0 3 ADGRA1 chr10:134940835 5'GT 134940835 Upstream 63bp
chr7 150211962 150211962 1 + A G rs188197773 150211959 + 150211939 150211979 41 CGGTACAGACACTTTTAACTCACAGTAAAAGCAAAAGCAAC CGGTACAGACACTTTTAACTCACGGTAAAAGCAAAAGCAAC < 41bp 0.588589488352038 0.78879645930645 0.030489177 0.2861323 prediction 0.400413941908823 Functional Gain - GIMAP7 ENSG00000179144 UTR5 Human protein_coding chr7:150211959 chr7:150211962 . . 0 24 hm5C_associated_SNPs_129774 0 0 0 0 1 GIMAP7 chr7:150212033 5'GT 150212033 Upstream 72bp
chr15 91136933 91136933 1 + C T SKCM 91136932 + 91136912 91136952 41 CGGGCTGGTGGAGAGGCCATCCAGGAACCGCTTCCACCCCC CGGGCTGGTGGAGAGGCCATCTAGGAACCGCTTCCACCCCC < 41bp 0.634822962525567 0.83502892834318 0.902845 0.8382392 prediction 0.400411931635226 Functional Gain - CRTC3 ENSG00000140577 CDS Human protein_coding chr15:91136932 chr15:91136933 synonymous SNV . 0 22 hm5C_associated_SNPs_129776 0 0 1 0 1 CRTC3 chr15:91136868 3'AG 91136868 Downstream 66bp
chr19 40172671 40172671 1 + C T UCEC 40172670 + 40172650 40172690 41 GCTGCAGGTGGATTTCCATACCGAGATGAAGGAAGACTCAG GCTGCAGGTGGATTTCCATACTGAGATGAAGGAAGACTCAG < 41bp 0.514655045668144 0.714855420947119 0.18286893 0.18287349 prediction 0.400400750557951 Functional Gain - LGALS17A ENSG00000226025 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:40172670 chr19:40172671 . . 0 22 hm5C_associated_SNPs_129778 0 0 0 1 1 LGALS17A chr19:40172638 3'AG 40172638 Downstream 34bp
chr1 25611111 25611111 1 + A G STAD 25611108 + 25611088 25611128 41 CGGCCATTGGCTTGGGCTTCCTCACCTCGAGTTTCCGGAGA CGGCCATTGGCTTGGGCTTCCTCGCCTCGAGTTTCCGGAGA < 41bp 0.447835188967881 0.700199827955323 0.024011433 0.034383565 prediction 0.400399655910647 Functional Gain - RHD ENSG00000187010 CDS Human protein_coding chr1:25611108 chr1:25611111 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_129779 0 0 1 0 1 RHD chr1:25611064 3'AG 25611064 Downstream 48bp
chr9 130440725 130440725 1 + C T COAD 130440724 + 130440704 130440744 41 ATGCAGTCCACGCTGCGTCGCCGGAGCAAGCCGGAGCGGAA ATGCAGTCCACGCTGCGTCGCTGGAGCAAGCCGGAGCGGAA < 41bp 0.64218277810068 0.842374210466028 0.25554442 0.12066963 prediction 0.400382864730695 Functional Gain - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130440724 chr9:130440725 nonsynonymous SNV 0.992 1 22 hm5C_associated_SNPs_129782 0 0 0 0 2 STXBP1 chr9:130440710 3'AG 130440710 Downstream 16bp
chr9 130440725 130440725 1 + C T COAD 130440724 + 130440704 130440744 41 ATGCAGTCCACGCTGCGTCGCCGGAGCAAGCCGGAGCGGAA ATGCAGTCCACGCTGCGTCGCTGGAGCAAGCCGGAGCGGAA < 41bp 0.64218277810068 0.842374210466028 0.25554442 0.12066963 prediction 0.400382864730695 Functional Gain - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130440724 chr9:130440725 nonsynonymous SNV 0.992 1 22 hm5C_associated_SNPs_129782 0 0 0 0 2 STXBP1 chr9:130440811 5'GT 130440811 Upstream 87bp
chr10 50835781 50835781 1 + C A GBM 50835777 + 50835757 50835797 41 GTTTGCCTCCAATTGGCCTGCTGACGTCTGACGGGAGGAGC GTTTGCCTCCAATTGGCCTGCTGAAGTCTGACGGGAGGAGC < 41bp 0.285684435078943 0.700182947646859 0.15243739 0.24910986 prediction 0.400365895293717 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50835777 chr10:50835781 nonsynonymous SNV 0.993 5 25 hm5C_associated_SNPs_129784 0 0 0 0 1 CHAT chr10:50835831 5'GT 50835831 Upstream 51bp
chr2 192542965 192542965 1 + C T rs541440668 192542964 + 192542944 192542984 41 GGGACAGGCTGGGCGCGCGCCCGTGTGAGTGAGCGGGACTC GGGACAGGCTGGGCGCGCGCCTGTGTGAGTGAGCGGGACTC < 41bp 0.546406044182465 0.746587557734994 0.6154832 0.5595065 prediction 0.400363027105058 Functional Gain - NABP1 ENSG00000173559 UTR5 Human protein_coding chr2:192542964 chr2:192542965 . . 0 22 hm5C_associated_SNPs_129785 0 0 1 0 1 NABP1 chr2:192542967 5'GT 192542967 Upstream 3bp
chr11 71819726 71819726 1 + C A LIHC 71819725 + 71819705 71819745 41 TATCAGCTGAGTCGGGCAGACCTGGTGCTCCTGGCACACCG TATCAGCTGAGTCGGGCAGACATGGTGCTCCTGGCACACCG < 41bp 0.441358863842994 0.700175594351142 0.89298487 0.85204285 prediction 0.400351188702283 Functional Gain - LRTOMT ENSG00000184154 CDS Human protein_coding chr11:71819725 chr11:71819726 nonsynonymous SNV 0.990 2 22 hm5C_associated_SNPs_129788 0 0 0 0 1 LRTOMT chr11:71819651 3'AG 71819651 Downstream 76bp
chr12 7067172 7067172 1 + C T SKCM 7067171 + 7067151 7067191 41 CCTGGGGGTGTCCTCAGCTTCCTGGACCAGATCAACCAGCG CCTGGGGGTGTCCTCAGCTTCTTGGACCAGATCAACCAGCG < 41bp 0.438285091803703 0.700174408781885 0.12605217 0.15887782 prediction 0.400348817563769 Functional Gain - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7067171 chr12:7067172 synonymous SNV . 0 22 hm5C_associated_SNPs_129789 0 0 1 0 2 PTPN6 chr12:7067082 3'AG 7067082 Downstream 91bp
chr12 7067172 7067172 1 + C T SKCM 7067171 + 7067151 7067191 41 CCTGGGGGTGTCCTCAGCTTCCTGGACCAGATCAACCAGCG CCTGGGGGTGTCCTCAGCTTCTTGGACCAGATCAACCAGCG < 41bp 0.438285091803703 0.700174408781885 0.12605217 0.15887782 prediction 0.400348817563769 Functional Gain - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7067171 chr12:7067172 synonymous SNV . 0 22 hm5C_associated_SNPs_129789 0 0 1 0 2 PTPN6 chr12:7067236 5'GT 7067236 Upstream 65bp
chr16 57144766 57144766 1 + C A LUSC 57144765 + 57144745 57144785 41 AGTGGCCAGAACCTACTGGACCGGGATGTTACCTCCAAGTC AGTGGCCAGAACCTACTGGACAGGGATGTTACCTCCAAGTC < 41bp 0.655642318789232 0.8558150879343 0.43936086 0.5306371 prediction 0.400345538290136 Functional Gain - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144765 chr16:57144766 synonymous SNV . 0 22 hm5C_associated_SNPs_129790 0 0 0 0 1 CPNE2 chr16:57144834 5'GT 57144834 Upstream 69bp
chr5 3600737 3600737 1 + C A LUSC 3600736 + 3600716 3600756 41 CTCGCAGAGAGAGACCTCGTCCCCAGGCCAGATTCGCCGGC CTCGCAGAGAGAGACCTCGTCACCAGGCCAGATTCGCCGGC < 41bp 0.645257541330138 0.845424934818836 0.11158553 0.1399199 prediction 0.400334786977396 Functional Gain - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3600736 chr5:3600737 nonsynonymous SNV 0.938 0 22 hm5C_associated_SNPs_129793 0 0 0 0 2 IRX1 chr5:3600723 3'AG 3600723 Downstream 15bp
chr5 3600737 3600737 1 + C A LUSC 3600736 + 3600716 3600756 41 CTCGCAGAGAGAGACCTCGTCCCCAGGCCAGATTCGCCGGC CTCGCAGAGAGAGACCTCGTCACCAGGCCAGATTCGCCGGC < 41bp 0.645257541330138 0.845424934818836 0.11158553 0.1399199 prediction 0.400334786977396 Functional Gain - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3600736 chr5:3600737 nonsynonymous SNV 0.938 0 22 hm5C_associated_SNPs_129793 0 0 0 0 2 IRX1 chr5:3600795 5'GT 3600795 Upstream 59bp
chr8 145617309 145617309 1 + C T SKCM 145617308 + 145617288 145617328 41 CTAGTTCTGGTGCGGAAAGGCCCGGACGGGAAAGCGGAGCT CTAGTTCTGGTGCGGAAAGGCTCGGACGGGAAAGCGGAGCT < 41bp 0.634650158537497 0.834811492388251 0.34808573 0.23073065 prediction 0.400322667701508 Functional Gain - ADCK5 ENSG00000173137 CDS Human protein_coding chr8:145617308 chr8:145617309 nonsynonymous SNV 0.679 0 22 hm5C_associated_SNPs_129796 0 0 1 0 2 ADCK5 chr8:145617292 3'AG 145617292 Downstream 18bp
chr8 145617309 145617309 1 + C T SKCM 145617308 + 145617288 145617328 41 CTAGTTCTGGTGCGGAAAGGCCCGGACGGGAAAGCGGAGCT CTAGTTCTGGTGCGGAAAGGCTCGGACGGGAAAGCGGAGCT < 41bp 0.634650158537497 0.834811492388251 0.34808573 0.23073065 prediction 0.400322667701508 Functional Gain - ADCK5 ENSG00000173137 CDS Human protein_coding chr8:145617308 chr8:145617309 nonsynonymous SNV 0.679 0 22 hm5C_associated_SNPs_129796 0 0 1 0 2 ADCK5 chr8:145617370 5'GT 145617370 Upstream 62bp
chr1 201297955 201297955 1 + C T UCEC 201297954 + 201297934 201297974 41 CAGCCTCAGGAACTTCACCTCCCGATTCTAAGAAGAGACTG CAGCCTCAGGAACTTCACCTCTCGATTCTAAGAAGAGACTG < 41bp 0.423984047937065 0.700158728426431 0.20265245 0.92033595 prediction 0.400317456852862 Functional Gain - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201297954 chr1:201297955 synonymous SNV . 0 22 hm5C_associated_SNPs_129797 0 0 0 0 2 PKP1 chr1:201297890 3'AG 201297890 Downstream 66bp
chr1 201297955 201297955 1 + C T UCEC 201297954 + 201297934 201297974 41 CAGCCTCAGGAACTTCACCTCCCGATTCTAAGAAGAGACTG CAGCCTCAGGAACTTCACCTCTCGATTCTAAGAAGAGACTG < 41bp 0.423984047937065 0.700158728426431 0.20265245 0.92033595 prediction 0.400317456852862 Functional Gain - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201297954 chr1:201297955 synonymous SNV . 0 22 hm5C_associated_SNPs_129797 0 0 0 0 2 PKP1 chr1:201297996 5'GT 201297996 Upstream 42bp
chr17 41004906 41004906 1 + C G ESCA 41004902 + 41004882 41004922 41 GGGAACCAAGTGTCAGAGCACACCCTGGGCACGGTCCACAC GGGAACCAAGTGTCAGAGCACACCGTGGGCACGGTCCACAC < 41bp 0.403758853916096 0.700157210479625 0.12332171 0.455884 prediction 0.400314420959251 Functional Gain - AOC3 ENSG00000131471 CDS Human protein_coding chr17:41004902 chr17:41004906 nonsynonymous SNV 0.392 4 25 hm5C_associated_SNPs_129799 0 0 0 0 1 AOC3 chr17:41004960 5'GT 41004960 Upstream 55bp
chr12 52698737 52698737 1 + C T LGG 52698736 + 52698716 52698756 41 GATGTGGACTGCGCCTACCTCCGCAAATCAGACCTGGAGGC GATGTGGACTGCGCCTACCTCTGCAAATCAGACCTGGAGGC < 41bp 0.654964377156336 0.855101738428865 0.17439234 0.3047122 prediction 0.400274722545058 Functional Gain - KRT86 ENSG00000170442 CDS Human protein_coding chr12:52698736 chr12:52698737 nonsynonymous SNV 0.984 0 22 hm5C_associated_SNPs_129804 0 0 0 0 2 KRT86 chr12:52698716 3'AG 52698716 Downstream 22bp
chr12 52698737 52698737 1 + C T LGG 52698736 + 52698716 52698756 41 GATGTGGACTGCGCCTACCTCCGCAAATCAGACCTGGAGGC GATGTGGACTGCGCCTACCTCTGCAAATCAGACCTGGAGGC < 41bp 0.654964377156336 0.855101738428865 0.17439234 0.3047122 prediction 0.400274722545058 Functional Gain - KRT86 ENSG00000170442 CDS Human protein_coding chr12:52698736 chr12:52698737 nonsynonymous SNV 0.984 0 22 hm5C_associated_SNPs_129804 0 0 0 0 2 KRT86 chr12:52698811 5'GT 52698811 Upstream 75bp
chr7 98985702 98985702 1 + C A LUAD 98985698 + 98985678 98985718 41 CGAGAGTAACCGTATTGTGACCTGCGGCACAGACCGCAACG CGAGAGTAACCGTATTGTGACCTGAGGCACAGACCGCAACG < 41bp 0.29726732807259 0.700127579584589 0.28817427 0.71586066 prediction 0.400255159169177 Functional Gain - ARPC1B ENSG00000130429 CDS Human protein_coding chr7:98985698 chr7:98985702 stopgain 0.147 1 25 hm5C_associated_SNPs_129807 0 0 1 0 1 ARPC1B chr7:98985662 3'AG 98985662 Downstream 41bp
chr16 57786449 57786449 1 + C T UCEC 57786448 + 57786428 57786468 41 GGCTGCCTTTGCAGGACAATCCGCTTCTGGGACCTGGAGAA GGCTGCCTTTGCAGGACAATCTGCTTCTGGGACCTGGAGAA < 41bp 0.443350194528376 0.700125328258966 0.5119202 0.29430467 prediction 0.400250656517932 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57786448 chr16:57786449 nonsynonymous SNV 0.464 4 22 hm5C_associated_SNPs_129809 0 0 1 0 2 KATNB1 chr16:57786442 3'AG 57786442 Downstream 8bp
chr16 57786449 57786449 1 + C T UCEC 57786448 + 57786428 57786468 41 GGCTGCCTTTGCAGGACAATCCGCTTCTGGGACCTGGAGAA GGCTGCCTTTGCAGGACAATCTGCTTCTGGGACCTGGAGAA < 41bp 0.443350194528376 0.700125328258966 0.5119202 0.29430467 prediction 0.400250656517932 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57786448 chr16:57786449 nonsynonymous SNV 0.464 4 22 hm5C_associated_SNPs_129809 0 0 1 0 2 KATNB1 chr16:57786513 5'GT 57786513 Upstream 65bp
chr5 143352 143352 1 + C G LUAD 143351 + 143331 143371 41 CAGTCAGGAGCTGCTGCAGTCCGGGGTCGTCACCCTCCCAG CAGTCAGGAGCTGCTGCAGTCGGGGGTCGTCACCCTCCCAG < 41bp 0.703562593223835 0.903679010547304 0.9453949 0.96300673 prediction 0.40023283464694 Functional Gain - PLEKHG4B ENSG00000153404 CDS Human protein_coding chr5:143351 chr5:143352 synonymous SNV . 0 22 hm5C_associated_SNPs_129811 0 0 0 0 1 PLEKHG4B chr5:143371 5'GT 143371 Upstream 20bp
chrX 50654045 50654045 1 + C T CESC 50654044 + 50654024 50654064 41 CATGGGCACCCTAGAGAGAACCGCACCATTGGGGCCACCAT CATGGGCACCCTAGAGAGAACTGCACCATTGGGGCCACCAT < 41bp 0.632053576756506 0.832169952080877 0.35366383 0.35861796 prediction 0.400232750648743 Functional Gain - BMP15 ENSG00000130385 CDS Human protein_coding chrX:50654044 chrX:50654045 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_129812 0 0 0 0 1 BMP15 chrX:50654111 5'GT 50654111 Upstream 67bp
chr6 43613044 43613044 1 + C T STAD 43613043 + 43613023 43613063 41 TGAGTGAGGACCAGCTCGCACCGCGCAAGACGCTCTATAGG TGAGTGAGGACCAGCTCGCACTGCGCAAGACGCTCTATAGG < 41bp 0.571105298697834 0.771220054462691 0.6974192 0.6759081 prediction 0.400229511529715 Functional Gain - RSPH9 ENSG00000172426 CDS Human protein_coding chr6:43613043 chr6:43613044 nonsynonymous SNV 0.982 0 22 hm5C_associated_SNPs_129813 0 0 0 0 1 RSPH9 chr6:43613062 5'GT 43613062 Upstream 19bp
chr14 78365561 78365561 1 + A G COAD 78365558 + 78365538 78365578 41 CCTCAATGAAGGGAGGAATGCTGAGAAGGTGTCCCAGATGC CCTCAATGAAGGGAGGAATGCTGGGAAGGTGTCCCAGATGC < 41bp 0.616395592963468 0.816508245589746 0.8084866 0.8731196 prediction 0.400225305252558 Functional Gain - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78365558 chr14:78365561 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_129817 0 0 0 0 1 ADCK1 chr14:78365601 5'GT 78365601 Upstream 41bp
chr2 160569067 160569067 1 + C G rs117626556 160569063 + 160569043 160569083 41 GCGGGCGCCATTGTGCTTCGCTGCCGACTGCATTTCCTCAG GCGGGCGCCATTGTGCTTCGCTGCGGACTGCATTTCCTCAG < 41bp 0.668250030653799 0.86836139722315 0.34392548 0.575132 prediction 0.400222733138703 Functional Gain - MARCH7 ENSG00000136536 UTR5 Human protein_coding chr2:160569063 chr2:160569067 . . 0 25 hm5C_associated_SNPs_129818 0 0 1 0 1 MARCH7 chr2:160569117 5'GT 160569117 Upstream 51bp
chr15 57976677 57976677 1 + T C UCEC 57976675 + 57976655 57976695 41 ACAAGAGTCCTGGAGTTAACCATGAAGAAAACTCTGACTTA ACAAGAGTCCTGGAGTTAACCACGAAGAAAACTCTGACTTA < 41bp 0.65756355448188 0.857671811311477 0.047290534 0.0861119 prediction 0.400216513659194 Functional Gain - MYZAP ENSG00000137878;ENSG00000263155 CDS Human other chr15:57976675 chr15:57976677 nonsynonymous SNV 0.404 0 23 hm5C_associated_SNPs_129822 0 0 0 0 1 MYZAP chr15:57976600 3'AG 57976600 Downstream 78bp
chr9 139887631 139887631 1 + C T SKCM 139887630 + 139887610 139887650 41 ACCAGGCCCAGAGGCAGCCCCCAGGCTGCGGGCGCTGACAC ACCAGGCCCAGAGGCAGCCCCTAGGCTGCGGGCGCTGACAC < 41bp 0.630650847614102 0.830757583760503 0.7849982 0.6543114 prediction 0.4002134722928 Functional Gain - C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887630 chr9:139887631 synonymous SNV . 0 22 hm5C_associated_SNPs_129823 0 0 1 0 1 C9orf142 chr9:139887695 5'GT 139887695 Upstream 65bp
chr17 72939736 72939736 1 + T G UCEC 72939732 + 72939712 72939752 41 TGCTGACCCTGGCCACAAACCTGCTGCTGTGGGTTCTGGCC TGCTGACCCTGGCCACAAACCTGCGGCTGTGGGTTCTGGCC < 41bp 0.487061607962058 0.700104330837074 0.20805278 0.40560734 prediction 0.400208661674148 Functional Gain - OTOP3 ENSG00000182938 CDS Human protein_coding chr17:72939732 chr17:72939736 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_129824 0 0 0 0 2 OTOP3 chr17:72939701 3'AG 72939701 Downstream 36bp
chr17 72939736 72939736 1 + T G UCEC 72939732 + 72939712 72939752 41 TGCTGACCCTGGCCACAAACCTGCTGCTGTGGGTTCTGGCC TGCTGACCCTGGCCACAAACCTGCGGCTGTGGGTTCTGGCC < 41bp 0.487061607962058 0.700104330837074 0.20805278 0.40560734 prediction 0.400208661674148 Functional Gain - OTOP3 ENSG00000182938 CDS Human protein_coding chr17:72939732 chr17:72939736 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_129824 0 0 0 0 2 OTOP3 chr17:72939819 5'GT 72939819 Upstream 84bp
chr3 1425009 1425009 1 + C T UCEC 1425008 + 1424988 1425028 41 GCCCCAAGGGGAACTTCTCTCCAGAGTTTTTCTGCTTCTGA GCCCCAAGGGGAACTTCTCTCTAGAGTTTTTCTGCTTCTGA < 41bp 0.627980091840036 0.828079166286622 0.67890626 0.18368724 prediction 0.400198148893174 Functional Gain - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1425008 chr3:1425009 stopgain 0.984 0 22 hm5C_associated_SNPs_129825 0 0 0 0 2 CNTN6 chr3:1424977 3'AG 1424977 Downstream 33bp
chr3 1425009 1425009 1 + C T UCEC 1425008 + 1424988 1425028 41 GCCCCAAGGGGAACTTCTCTCCAGAGTTTTTCTGCTTCTGA GCCCCAAGGGGAACTTCTCTCTAGAGTTTTTCTGCTTCTGA < 41bp 0.627980091840036 0.828079166286622 0.67890626 0.18368724 prediction 0.400198148893174 Functional Gain - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1425008 chr3:1425009 stopgain 0.984 0 22 hm5C_associated_SNPs_129825 0 0 0 0 2 CNTN6 chr3:1425092 5'GT 1425092 Upstream 84bp
chr7 127228564 127228564 1 + C T SKCM 127228563 + 127228543 127228583 41 GGGCCCCGCCATGGGCCTCACCGTGTCCGCGCTCTTTTCGC GGGCCCCGCCATGGGCCTCACTGTGTCCGCGCTCTTTTCGC < 41bp 0.538866863198253 0.738959354803044 0.23546898 0.25734234 prediction 0.400184983209582 Functional Gain - ARF5 ENSG00000004059 CDS Human protein_coding chr7:127228563 chr7:127228564 synonymous SNV . 0 22 hm5C_associated_SNPs_129829 0 0 1 0 1 ARF5 chr7:127228619 5'GT 127228619 Upstream 56bp
chr6 160239666 160239666 1 + C T BLCA 160239665 + 160239645 160239685 41 GTGAACCAAGTGAACCTCATCCGAGCGGGGGTCCCAAAGAT GTGAACCAAGTGAACCTCATCTGAGCGGGGGTCCCAAAGAT < 41bp 0.445223727219264 0.700087901422685 0.37208983 0.3642644 prediction 0.400175802845371 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160239665 chr6:160239666 stopgain 0.997 1 22 hm5C_associated_SNPs_129832 0 0 1 0 2 PNLDC1 chr6:160239587 3'AG 160239587 Downstream 80bp
chr6 160239666 160239666 1 + C T BLCA 160239665 + 160239645 160239685 41 GTGAACCAAGTGAACCTCATCCGAGCGGGGGTCCCAAAGAT GTGAACCAAGTGAACCTCATCTGAGCGGGGGTCCCAAAGAT < 41bp 0.445223727219264 0.700087901422685 0.37208983 0.3642644 prediction 0.400175802845371 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160239665 chr6:160239666 stopgain 0.997 1 22 hm5C_associated_SNPs_129832 0 0 1 0 2 PNLDC1 chr6:160239686 5'GT 160239686 Upstream 21bp
chr17 62075714 62075714 1 + C A rs559319938 62075713 + 62075693 62075733 41 CCTCGGCGTCGCCAAGGCAACCGGCGCCAGCCATGGCCTCT CCTCGGCGTCGCCAAGGCAACAGGCGCCAGCCATGGCCTCT < 41bp 0.613158499789031 0.813244800682301 0.8137847 0.8409296 prediction 0.400172601786541 Functional Gain - PRR29-AS1 ENSG00000264954 ncRNA_exonic Human protein_coding chr17:62075713 chr17:62075714 . . 0 22 hm5C_associated_SNPs_129833 0 0 0 0 1 PRR29 chr17:62075784 5'GT 62075784 Upstream 71bp
chr4 124319665 124319665 1 + C G rs571675258 124319664 + 124319644 124319684 41 GCCCCCGGCCACCGCTTCGGCCTAGGTGAGTGTGTGCGGCG GCCCCCGGCCACCGCTTCGGCGTAGGTGAGTGTGTGCGGCG < 41bp 0.396819604816348 0.700082263650442 0.28328288 0.3300671 prediction 0.400164527300884 Functional Gain - SPRY1 ENSG00000164056 UTR5 Human protein_coding chr4:124319664 chr4:124319665 . . 0 22 hm5C_associated_SNPs_129835 0 0 1 0 1 SPRY1 chr4:124319668 5'GT 124319668 Upstream 4bp
chr9 131039032 131039032 1 + C G LUAD 131039031 + 131039011 131039051 41 TGCCGCGGGGCCTTCCGATCCCCTGTGAGTATTTCTTCCCC TGCCGCGGGGCCTTCCGATCCGCTGTGAGTATTTCTTCCCC < 41bp 0.372932658610104 0.700079121224551 0.06709698 0.24774343 prediction 0.400158242449102 Functional Gain - SWI5 ENSG00000175854 CDS Human protein_coding chr9:131039031 chr9:131039032 nonsynonymous SNV 0.056 4 22 hm5C_associated_SNPs_129836 0 0 1 0 1 SWI5 chr9:131039034 5'GT 131039034 Upstream 3bp
chr4 52938270 52938270 1 + C A HNSC 52938269 + 52938249 52938289 41 TATAAGAAACAGCTCCGAAACCTGAAGGAGGAGATAGCTGT TATAAGAAACAGCTCCGAAACATGAAGGAGGAGATAGCTGT < 41bp 0.435424633689146 0.700077903973953 0.14417386 0.10985187 prediction 0.400155807947906 Functional Gain - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52938269 chr4:52938270 nonsynonymous SNV 0.120 4 22 hm5C_associated_SNPs_129837 0 0 1 0 1 SPATA18 chr4:52938322 5'GT 52938322 Upstream 53bp
chr8 143922570 143922570 1 + T C COAD 143922568 + 143922548 143922588 41 AGATGCCATGACTGTGCGGTCATAAATGACTTCAACTGTCC AGATGCCATGACTGTGCGGTCACAAATGACTTCAACTGTCC < 41bp 0.431371445398168 0.700069640545629 0.0498178 0.06316981 prediction 0.400139281091258 Functional Gain - GML ENSG00000104499 CDS Human protein_coding chr8:143922568 chr8:143922570 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_129841 0 0 0 0 2 GML chr8:143922534 3'AG 143922534 Downstream 37bp
chr8 143922570 143922570 1 + T C COAD 143922568 + 143922548 143922588 41 AGATGCCATGACTGTGCGGTCATAAATGACTTCAACTGTCC AGATGCCATGACTGTGCGGTCACAAATGACTTCAACTGTCC < 41bp 0.431371445398168 0.700069640545629 0.0498178 0.06316981 prediction 0.400139281091258 Functional Gain - GML ENSG00000104499 CDS Human protein_coding chr8:143922568 chr8:143922570 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_129841 0 0 0 0 2 GML chr8:143922641 5'GT 143922641 Upstream 72bp
chr1 180897700 180897700 1 + A G UCEC 180897697 + 180897677 180897717 41 TGACATCGTGCCCACCATTACCCAGGGCAGCCGGTGAGTGG TGACATCGTGCCCACCATTACCCGGGGCAGCCGGTGAGTGG < 41bp 0.444547170821187 0.700068411080741 0.09258336 0.8684019 prediction 0.400136822161482 Functional Gain - KIAA1614 ENSG00000135835 CDS Human protein_coding chr1:180897697 chr1:180897700 nonsynonymous SNV 0.149 0 24 hm5C_associated_SNPs_129842 0 0 0 0 1 KIAA1614 chr1:180897709 5'GT 180897709 Upstream 10bp
chr17 7318874 7318874 1 + C A BRCA 7318873 + 7318853 7318893 41 TGGTGGATGGCGACGTGGTCCCCGATGACCCTGAGATCCTC TGGTGGATGGCGACGTGGTCCACGATGACCCTGAGATCCTC < 41bp 0.655803747494198 0.855862140868034 0.062668115 0.04934761 prediction 0.400116786747671 Functional Gain - NLGN2 ENSG00000169992 CDS Human protein_coding chr17:7318873 chr17:7318874 nonsynonymous SNV 0.859 4 22 hm5C_associated_SNPs_129846 0 0 1 0 1 NLGN2 chr17:7318830 3'AG 7318830 Downstream 45bp
chr19 11468366 11468366 1 + C T GBM 11468365 + 11468345 11468385 41 TCACCATGGCGGGAGGGAGACCGCATCTGAAGAGGAGTTTC TCACCATGGCGGGAGGGAGACTGCATCTGAAGAGGAGTTTC < 41bp 0.607876400650026 0.807934313319554 0.33474004 0.48110473 prediction 0.400115825339056 Functional Gain - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11468365 chr19:11468366 nonsynonymous SNV 0.882 2 22 hm5C_associated_SNPs_129848 0 0 0 0 2 PLPPR2 chr19:11468336 3'AG 11468336 Downstream 31bp
chr19 11468366 11468366 1 + C T GBM 11468365 + 11468345 11468385 41 TCACCATGGCGGGAGGGAGACCGCATCTGAAGAGGAGTTTC TCACCATGGCGGGAGGGAGACTGCATCTGAAGAGGAGTTTC < 41bp 0.607876400650026 0.807934313319554 0.33474004 0.48110473 prediction 0.400115825339056 Functional Gain - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11468365 chr19:11468366 nonsynonymous SNV 0.882 2 22 hm5C_associated_SNPs_129848 0 0 0 0 2 PLPPR2 chr19:11468415 5'GT 11468415 Upstream 50bp
chr16 88781314 88781314 1 + C G rs139862860 88781310 + 88781290 88781330 41 GAGGAGCAGCTGTGCTACAGCTGCCGCGTGAACATGAAGGA GAGGAGCAGCTGTGCTACAGCTGCGGCGTGAACATGAAGGA < 41bp 0.403400228473594 0.700051470087232 0.3117327 0.26370516 prediction 0.400102940174465 Functional Gain - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781310 chr16:88781314 nonsynonymous SNV 0.957 4 25 hm5C_associated_SNPs_129852 0 0 1 0 2 CTU2 chr16:88781268 3'AG 88781268 Downstream 47bp
chr16 88781314 88781314 1 + C G rs139862860 88781310 + 88781290 88781330 41 GAGGAGCAGCTGTGCTACAGCTGCCGCGTGAACATGAAGGA GAGGAGCAGCTGTGCTACAGCTGCGGCGTGAACATGAAGGA < 41bp 0.403400228473594 0.700051470087232 0.3117327 0.26370516 prediction 0.400102940174465 Functional Gain - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781310 chr16:88781314 nonsynonymous SNV 0.957 4 25 hm5C_associated_SNPs_129852 0 0 1 0 2 CTU2 chr16:88781334 5'GT 88781334 Upstream 21bp
chr1 28586376 28586376 1 + C G rs34315986 28586375 + 28586355 28586395 41 CACCATGATCGTGGCGGACTCCGAGTGCCGCGCAGAGCTCA CACCATGATCGTGGCGGACTCGGAGTGCCGCGCAGAGCTCA < 41bp 0.696928183501099 0.896975968134403 0.7465588 0.91189027 prediction 0.400095569266608 Functional Gain - SESN2 ENSG00000130766 CDS Human protein_coding chr1:28586375 chr1:28586376 synonymous SNV . 0 22 hm5C_associated_SNPs_129855 0 0 1 0 1 SESN2 chr1:28586448 5'GT 28586448 Upstream 73bp
chr7 142425450 142425450 1 + A G rs139031324 142425447 + 142425427 142425467 41 CCTGCACAGCCACTTCCTCTCTGAACAGAAAAGACTGCCAC CCTGCACAGCCACTTCCTCTCTGGACAGAAAAGACTGCCAC < 41bp 0.477451110629736 0.700044922943683 0.10054284 0.18785161 prediction 0.400089845887367 Functional Gain - MTRNR2L6;PRSS1 ENSG00000211752;ENSG00000211753 intergenic Human other chr7:142425447 chr7:142425450 . . 0 24 hm5C_associated_SNPs_129857 0 0 0 0 1 MTRNR2L6;PRSS1 chr7:142425384 3'AG 142425384 Downstream 67bp
chr17 16329475 16329475 1 + C T UCEC 16329474 + 16329454 16329494 41 CCACCTTTCCCGAAAGTTCACCGAGTGGTGCTATGGGCCTG CCACCTTTCCCGAAAGTTCACTGAGTGGTGCTATGGGCCTG < 41bp 0.447183176796028 0.700042796655901 0.35981274 0.25398022 prediction 0.400085593311802 Functional Gain - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16329474 chr17:16329475 synonymous SNV . 0 22 hm5C_associated_SNPs_129858 0 0 0 0 1 TRPV2 chr17:16329413 3'AG 16329413 Downstream 63bp
chr17 78081504 78081504 1 + C T rs142967546 78081503 + 78081483 78081523 41 ACCAGGATCACCCTGTGGAACCGGGACCTTGCGCCCACGGT ACCAGGATCACCCTGTGGAACTGGGACCTTGCGCCCACGGT < 41bp 0.608596734596879 0.808633335892251 0.388959 0.24088416 prediction 0.400073202590743 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78081503 chr17:78081504 nonsynonymous SNV 0.971 5 22 hm5C_associated_SNPs_129862 1 0 0 0 1 GAA chr17:78081521 5'GT 78081521 Upstream 18bp
chr13 45594491 45594491 1 + C T SKCM 45594490 + 45594470 45594510 41 ACAAGAAGCAAGGAAGTCATCCAGTAAGAAAGATGAAGAAC ACAAGAAGCAAGGAAGTCATCTAGTAAGAAAGATGAAGAAC < 41bp 0.458409525525884 0.700024883258502 0.07232949 0.1291658 prediction 0.400049766517004 Functional Gain - GPALPP1 ENSG00000133114 CDS Human protein_coding chr13:45594490 chr13:45594491 synonymous SNV . 0 22 hm5C_associated_SNPs_129867 0 0 1 1 1 GPALPP1 chr13:45594465 3'AG 45594465 Downstream 27bp
chr3 9979713 9979713 1 + C G rs2302787 9979712 + 9979692 9979732 41 GCCTCAGGCAGCAGGAGGCCCCGGACCTCTTCCAGTGGCTG GCCTCAGGCAGCAGGAGGCCCGGGACCTCTTCCAGTGGCTG < 41bp 0.704880936006536 0.904893723308806 0.88626707 0.9001434 prediction 0.40002557460454 Functional Gain - CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9979712 chr3:9979713 nonsynonymous SNV 0.954 4 22 hm5C_associated_SNPs_129869 1 0 1 0 2 CRELD1 chr3:9979699 3'AG 9979699 Downstream 15bp
chr3 9979713 9979713 1 + C G rs2302787 9979712 + 9979692 9979732 41 GCCTCAGGCAGCAGGAGGCCCCGGACCTCTTCCAGTGGCTG GCCTCAGGCAGCAGGAGGCCCGGGACCTCTTCCAGTGGCTG < 41bp 0.704880936006536 0.904893723308806 0.88626707 0.9001434 prediction 0.40002557460454 Functional Gain - CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9979712 chr3:9979713 nonsynonymous SNV 0.954 4 22 hm5C_associated_SNPs_129869 1 0 1 0 2 CRELD1 chr3:9979790 5'GT 9979790 Upstream 78bp
chr1 118035838 118035838 1 + A G LUSC 118035835 + 118035815 118035855 41 ACTGAAAGCATGGTTGATGTCAGATAAAACAGACCATGAGG ACTGAAAGCATGGTTGATGTCAGGTAAAACAGACCATGAGG < 41bp 0.589133774360744 0.789144985880999 0.3428923 0.53483015 prediction 0.400022423040511 Functional Gain - MAN1A2 ENSG00000198162 CDS Human protein_coding chr1:118035835 chr1:118035838 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_129871 0 0 1 0 2 MAN1A2 chr1:118035769 3'AG 118035769 Downstream 70bp
chr1 118035838 118035838 1 + A G LUSC 118035835 + 118035815 118035855 41 ACTGAAAGCATGGTTGATGTCAGATAAAACAGACCATGAGG ACTGAAAGCATGGTTGATGTCAGGTAAAACAGACCATGAGG < 41bp 0.589133774360744 0.789144985880999 0.3428923 0.53483015 prediction 0.400022423040511 Functional Gain - MAN1A2 ENSG00000198162 CDS Human protein_coding chr1:118035835 chr1:118035838 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_129871 0 0 1 0 2 MAN1A2 chr1:118035884 5'GT 118035884 Upstream 47bp
chr19 55330035 55330035 1 + C T SKCM 55330034 + 55330014 55330054 41 GTGGTCGGCACCCAGCAACCCCGTGGTGATCATGGTCACAG GTGGTCGGCACCCAGCAACCCTGTGGTGATCATGGTCACAG < 41bp 0.472351418856822 0.700007521562312 0.12749091 0.08914006 prediction 0.400015043124625 Functional Gain - KIR3DL1 ENSG00000167633 CDS Human protein_coding chr19:55330034 chr19:55330035 synonymous SNV . 0 22 hm5C_associated_SNPs_129872 0 0 0 0 1 KIR3DL1 chr19:55330054 5'GT 55330054 Upstream 20bp
chr20 18523015 18523015 1 + A G SKCM 18523012 + 18522992 18523032 41 ATTATCAGCACTCCAGCACCCAGAGACGCATCCGCGTGACC ATTATCAGCACTCCAGCACCCAGGGACGCATCCGCGTGACC < 41bp 0.623678661627997 0.823685409035206 0.75545454 0.88197744 prediction 0.400013494814417 Functional Gain - SEC23B ENSG00000101310 CDS Human protein_coding chr20:18523012 chr20:18523015 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_129873 0 0 0 0 2 SEC23B chr20:18522940 3'AG 18522940 Downstream 76bp
chr20 18523015 18523015 1 + A G SKCM 18523012 + 18522992 18523032 41 ATTATCAGCACTCCAGCACCCAGAGACGCATCCGCGTGACC ATTATCAGCACTCCAGCACCCAGGGACGCATCCGCGTGACC < 41bp 0.623678661627997 0.823685409035206 0.75545454 0.88197744 prediction 0.400013494814417 Functional Gain - SEC23B ENSG00000101310 CDS Human protein_coding chr20:18523012 chr20:18523015 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_129873 0 0 0 0 2 SEC23B chr20:18523046 5'GT 18523046 Upstream 32bp
chr16 31392248 31392248 1 + C G ESCA 31392247 + 31392227 31392267 41 GTGCTGGAGAAGTACAAGGTCCACAACCCCACCCCCCTCAT GTGCTGGAGAAGTACAAGGTCGACAACCCCACCCCCCTCAT < 41bp 0.374752993764249 0.700004264356005 0.07605353 0.1352987 prediction 0.400008528712011 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31392247 chr16:31392248 nonsynonymous SNV 0.019 1 22 hm5C_associated_SNPs_129874 0 0 0 0 2 ITGAX chr16:31392218 3'AG 31392218 Downstream 31bp
chr16 31392248 31392248 1 + C G ESCA 31392247 + 31392227 31392267 41 GTGCTGGAGAAGTACAAGGTCCACAACCCCACCCCCCTCAT GTGCTGGAGAAGTACAAGGTCGACAACCCCACCCCCCTCAT < 41bp 0.374752993764249 0.700004264356005 0.07605353 0.1352987 prediction 0.400008528712011 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31392247 chr16:31392248 nonsynonymous SNV 0.019 1 22 hm5C_associated_SNPs_129874 0 0 0 0 2 ITGAX chr16:31392328 5'GT 31392328 Upstream 81bp
chr1 84764245 84764245 1 + G C rs554635247 84764245 + 84764225 84764265 41 ACCTCCCGGCGCGGCCATGCGGGGAGGTAAGTGATCTGCCT ACCTCCCGGCGCGGCCATGCCGGGAGGTAAGTGATCTGCCT Direct Gain 0 0.99058058902764 0 0.959003567695618 prediction 0.981161178055279 Functional Gain - SAMD13 ENSG00000203943 CDS Human protein_coding chr1:84764245 chr1:84764245 nonsynonymous SNV 0.804 0 21 hm5C_associated_SNPs_129878 0 0 0 0 1 SAMD13 chr1:84764250 5'GT 84764250 Upstream 6bp
chr20 55905017 55905017 1 + A C BLCA 55905017 + 55904997 55905037 41 CTGCCCTGAGGAGAGGTGGCAGGGAGCCCCCAACTGGGGGA CTGCCCTGAGGAGAGGTGGCCGGGAGCCCCCAACTGGGGGA Direct Gain 0 0.985249534017231 0 0.881196737289429 prediction 0.970499068034462 Functional Gain - SPO11 ENSG00000054796 CDS Human protein_coding chr20:55905017 chr20:55905017 synonymous SNV . 0 21 hm5C_associated_SNPs_129892 0 0 0 0 1 SPO11 chr20:55905054 5'GT 55905054 Upstream 38bp
chr5 95067647 95067647 1 + G C COAD 95067647 + 95067627 95067667 41 GGGCTTATCCGCACTTACCTGGGGAGAAGCCCTCTGGTCTC GGGCTTATCCGCACTTACCTCGGGAGAAGCCCTCTGGTCTC Direct Gain 0 0.984589786936039 0 0.95508486032486 prediction 0.969179573872079 Functional Gain - RHOBTB3 ENSG00000164292 CDS Human protein_coding chr5:95067647 chr5:95067647 synonymous SNV . 0 21 hm5C_associated_SNPs_129900 0 0 1 0 1 RHOBTB3 chr5:95067563 3'AG 95067563 Downstream 85bp
chr12 64845918 64845918 1 + G C rs141593283 64845918 + 64845898 64845938 41 CCGGAAGTGTCCTGAGTCTCGAGGAGGCCGCGGGAGCCCGC CCGGAAGTGTCCTGAGTCTCCAGGAGGCCGCGGGAGCCCGC Direct Gain 0 0.984154580132998 0 0.924030661582947 prediction 0.968309160265997 Functional Gain - TBK1 ENSG00000183735 UTR5 Human protein_coding chr12:64845918 chr12:64845918 . . 0 21 hm5C_associated_SNPs_129904 0 0 1 0 1 TBK1 chr12:64845967 5'GT 64845967 Upstream 50bp
chr14 35515739 35515739 1 + A C rs200121612 35515739 + 35515719 35515759 41 GCCCTGTGGTGGCGACGACGATGGACCAGGAGCCAGTGGGC GCCCTGTGGTGGCGACGACGCTGGACCAGGAGCCAGTGGGC Direct Gain 0 0.982814906692081 0 0.787821173667908 prediction 0.965629813384161 Functional Gain - FAM177A1 ENSG00000151327 CDS Human protein_coding chr14:35515739 chr14:35515739 nonsynonymous SNV 0.433 1 21 hm5C_associated_SNPs_129913 0 0 1 0 2 FAM177A1 chr14:35515711 3'AG 35515711 Downstream 29bp
chr14 35515739 35515739 1 + A C rs200121612 35515739 + 35515719 35515759 41 GCCCTGTGGTGGCGACGACGATGGACCAGGAGCCAGTGGGC GCCCTGTGGTGGCGACGACGCTGGACCAGGAGCCAGTGGGC Direct Gain 0 0.982814906692081 0 0.787821173667908 prediction 0.965629813384161 Functional Gain - FAM177A1 ENSG00000151327 CDS Human protein_coding chr14:35515739 chr14:35515739 nonsynonymous SNV 0.433 1 21 hm5C_associated_SNPs_129913 0 0 1 0 2 FAM177A1 chr14:35515834 5'GT 35515834 Upstream 96bp
chr9 22447645 22447645 1 + T C UCEC 22447645 + 22447625 22447665 41 CCCTGCGGCGGGGGCTGCGCTGGGACTGGGTGCCTTGAGAC CCCTGCGGCGGGGGCTGCGCCGGGACTGGGTGCCTTGAGAC Direct Gain 0 0.982419425403289 0 0.848397731781006 prediction 0.964838850806578 Functional Gain - DMRTA1 ENSG00000176399 CDS Human protein_coding chr9:22447645 chr9:22447645 nonsynonymous SNV 0.023 1 21 hm5C_associated_SNPs_129918 0 0 0 0 1 DMRTA1 chr9:22447731 5'GT 22447731 Upstream 87bp
chr5 175875421 175875421 1 + G C rs184408647 175875421 + 175875401 175875441 41 GCGGCAAAATGGCGGCGCCTGAGGAGCGGGATCTAACCCAG GCGGCAAAATGGCGGCGCCTCAGGAGCGGGATCTAACCCAG Direct Gain 0 0.982410816912893 0 0.896212220191956 prediction 0.964821633825786 Functional Gain - FAF2 ENSG00000113194 CDS Human protein_coding chr5:175875421 chr5:175875421 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_129920 0 0 1 0 1 FAF2 chr5:175875471 5'GT 175875471 Upstream 51bp
chr2 224822285 224822285 1 + G C CESC 224822285 + 224822265 224822305 41 CCTCCGGTTCGGGGAGTGAAGAAGGGATTCCGCGCCGCCTT CCTCCGGTTCGGGGAGTGAACAAGGGATTCCGCGCCGCCTT Direct Gain 0 0.981750028248229 0 0.934934735298157 prediction 0.963500056496459 Functional Gain - MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224822285 chr2:224822285 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_129926 0 0 1 0 1 MRPL44 chr2:224822368 5'GT 224822368 Upstream 84bp
chr4 52938174 52938174 1 + G C OV 52938174 + 52938154 52938194 41 GGTCAGAGCCTTGGAGCTTGGAGGAGCGGAAGCGTGAGCAG GGTCAGAGCCTTGGAGCTTGCAGGAGCGGAAGCGTGAGCAG Direct Gain 0 0.981486234486365 0 0.857598423957825 prediction 0.962972468972731 Functional Gain - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52938174 chr4:52938174 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_129931 0 0 0 0 1 SPATA18 chr4:52938083 3'AG 52938083 Downstream 92bp
chr3 126137511 126137511 1 + G C LGG 126137511 + 126137491 126137531 41 TGGAGACGCTGGCGACCAAAGAGGAGGCCAGGCTGGAGCGG TGGAGACGCTGGCGACCAAACAGGAGGCCAGGCTGGAGCGG Direct Gain 0 0.98057292912032 0 0.894630432128906 prediction 0.961145858240641 Functional Gain - CFAP100 ENSG00000163885 CDS Human protein_coding chr3:126137511 chr3:126137511 nonsynonymous SNV 0.436 4 21 hm5C_associated_SNPs_129946 0 0 0 0 1 CFAP100 chr3:126137454 3'AG 126137454 Downstream 58bp
chr6 28253391 28253391 1 + T C UCEC 28253391 + 28253371 28253411 41 CAGAATATCAAGGAGTCTCTTTGGAGTGTCAGAGCCTCCAG CAGAATATCAAGGAGTCTCTCTGGAGTGTCAGAGCCTCCAG Direct Gain 0 0.980032463094598 0 0.922921597957611 prediction 0.960064926189197 Functional Gain - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28253391 chr6:28253391 synonymous SNV . 0 21 hm5C_associated_SNPs_129954 0 0 1 0 2 PGBD1 chr6:28253328 3'AG 28253328 Downstream 64bp
chr6 28253391 28253391 1 + T C UCEC 28253391 + 28253371 28253411 41 CAGAATATCAAGGAGTCTCTTTGGAGTGTCAGAGCCTCCAG CAGAATATCAAGGAGTCTCTCTGGAGTGTCAGAGCCTCCAG Direct Gain 0 0.980032463094598 0 0.922921597957611 prediction 0.960064926189197 Functional Gain - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28253391 chr6:28253391 synonymous SNV . 0 21 hm5C_associated_SNPs_129954 0 0 1 0 2 PGBD1 chr6:28253484 5'GT 28253484 Upstream 94bp
chr5 68485511 68485511 1 + G C ESCA 68485511 + 68485491 68485531 41 CGACGAGCCCGCGGACTCCGGAGGGGAAGGCCGGGCAGGCG CGACGAGCCCGCGGACTCCGCAGGGGAAGGCCGGGCAGGCG Direct Gain 0 0.979876597176133 0 0.899631142616272 prediction 0.959753194352265 Functional Gain - CENPH ENSG00000153044 CDS Human protein_coding chr5:68485511 chr5:68485511 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_129957 0 0 1 0 1 CENPH chr5:68485595 5'GT 68485595 Upstream 85bp
chr8 117779003 117779003 1 + T C COAD 117779003 + 117778983 117779023 41 GCAGCTGCCCCGCTACCTCATGGGGGAGACGCAGCTGTGCA GCAGCTGCCCCGCTACCTCACGGGGGAGACGCAGCTGTGCA Direct Gain 0 0.979495207696668 0 0.957830786705017 prediction 0.958990415393337 Functional Gain - UTP23 ENSG00000147679 CDS Human protein_coding chr8:117779003 chr8:117779003 nonsynonymous SNV 0.925 1 21 hm5C_associated_SNPs_129962 0 0 1 0 1 UTP23 chr8:117779030 5'GT 117779030 Upstream 28bp
chr13 20532940 20532940 1 + G C rs536011658 20532940 + 20532920 20532960 41 CGCCGAAGGGGGGTGGGCCGGGGGAGGGGAGGTTCGTTCCG CGCCGAAGGGGGGTGGGCCGCGGGAGGGGAGGTTCGTTCCG Direct Gain 0 0.979307452824012 0 0.923740983009338 prediction 0.958614905648024 Functional Gain - ZMYM2 ENSG00000121741 UTR5 Human protein_coding chr13:20532940 chr13:20532940 . . 0 21 hm5C_associated_SNPs_129965 0 0 1 0 1 ZMYM2 chr13:20532981 5'GT 20532981 Upstream 42bp
chr20 30193552 30193552 1 + G C BLCA 30193552 + 30193532 30193572 41 AGTTGGAACCCCCGGGGGCCGAGGGCTGCCGGTCCGGGCTC AGTTGGAACCCCCGGGGGCCCAGGGCTGCCGGTCCGGGCTC Direct Gain 0 0.978390563638158 0 0.76806366443634 prediction 0.956781127276316 Functional Gain - ID1 ENSG00000125968 CDS Human protein_coding chr20:30193552 chr20:30193552 nonsynonymous SNV 0.056 0 21 hm5C_associated_SNPs_129977 0 0 1 0 1 ID1 chr20:30193616 5'GT 30193616 Upstream 65bp
chr16 3454597 3454597 1 + T C UCS 3454597 + 3454577 3454617 41 ACCGGCTGAGCCCCCATCATTGGGAGAAATCCCCACTCCTC ACCGGCTGAGCCCCCATCATCGGGAGAAATCCCCACTCCTC Direct Gain 0 0.978218926236881 0 0.960057139396667 prediction 0.956437852473762 Functional Gain - ZNF174 ENSG00000103343;ENSG00000262621 CDS Human other chr16:3454597 chr16:3454597 nonsynonymous SNV 0.972 0 21 hm5C_associated_SNPs_129979 0 0 0 0 1 ZNF174 chr16:3454648 5'GT 3454648 Upstream 52bp
chr5 148727896 148727896 1 + G C OV 148727896 + 148727876 148727916 41 CTGGTGAGGACTGCCGTTCTGAGGACCCTCCTGATGAGCTT CTGGTGAGGACTGCCGTTCTCAGGACCCTCCTGATGAGCTT Direct Gain 0 0.977868861859454 0 0.866879880428314 prediction 0.955737723718908 Functional Gain - GRPEL2 ENSG00000164284 CDS Human protein_coding chr5:148727896 chr5:148727896 nonsynonymous SNV 0.995 2 21 hm5C_associated_SNPs_129982 0 0 1 0 2 GRPEL2 chr5:148727835 3'AG 148727835 Downstream 62bp
chr5 148727896 148727896 1 + G C OV 148727896 + 148727876 148727916 41 CTGGTGAGGACTGCCGTTCTGAGGACCCTCCTGATGAGCTT CTGGTGAGGACTGCCGTTCTCAGGACCCTCCTGATGAGCTT Direct Gain 0 0.977868861859454 0 0.866879880428314 prediction 0.955737723718908 Functional Gain - GRPEL2 ENSG00000164284 CDS Human protein_coding chr5:148727896 chr5:148727896 nonsynonymous SNV 0.995 2 21 hm5C_associated_SNPs_129982 0 0 1 0 2 GRPEL2 chr5:148727988 5'GT 148727988 Upstream 93bp
chr6 84563457 84563457 1 + A C OV 84563457 + 84563437 84563477 41 GGGTGGACGCCGGAGGCAAGAAAGAAGAGGAGACGCCGAAC GGGTGGACGCCGGAGGCAAGCAAGAAGAGGAGACGCCGAAC Direct Gain 0 0.977703205034513 0 0.769288420677185 prediction 0.955406410069027 Functional Gain - RIPPLY2 ENSG00000203877 CDS Human protein_coding chr6:84563457 chr6:84563457 nonsynonymous SNV 0.011 0 21 hm5C_associated_SNPs_129985 0 0 0 0 2 RIPPLY2 chr6:84563414 3'AG 84563414 Downstream 44bp
chr6 84563457 84563457 1 + A C OV 84563457 + 84563437 84563477 41 GGGTGGACGCCGGAGGCAAGAAAGAAGAGGAGACGCCGAAC GGGTGGACGCCGGAGGCAAGCAAGAAGAGGAGACGCCGAAC Direct Gain 0 0.977703205034513 0 0.769288420677185 prediction 0.955406410069027 Functional Gain - RIPPLY2 ENSG00000203877 CDS Human protein_coding chr6:84563457 chr6:84563457 nonsynonymous SNV 0.011 0 21 hm5C_associated_SNPs_129985 0 0 0 0 2 RIPPLY2 chr6:84563492 5'GT 84563492 Upstream 36bp
chr19 53989993 53989993 1 + T C LUAD 53989993 + 53989973 53990013 41 GACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGG GACGTGATGCTGGAGAATTACAGGAACCTGGTCTCCCTGGG Direct Gain 0 0.977517400373611 0 0.861611485481262 prediction 0.955034800747222 Functional Gain - ZNF813 ENSG00000198346 CDS Human protein_coding chr19:53989993 chr19:53989993 synonymous SNV . 0 21 hm5C_associated_SNPs_129992 0 0 0 0 1 ZNF813 chr19:53990012 5'GT 53990012 Upstream 20bp
chr4 26585819 26585819 1 + T C KIRP 26585819 + 26585799 26585839 41 GGGCTAGGGCAGGGGAAATGTTGCAGGAGGAGTCGGACCTC GGGCTAGGGCAGGGGAAATGCTGCAGGAGGAGTCGGACCTC Direct Gain 0 0.977232935335355 0 0.903556823730469 prediction 0.95446587067071 Functional Gain - TBC1D19 ENSG00000109680 CDS Human protein_coding chr4:26585819 chr4:26585819 synonymous SNV . 0 21 hm5C_associated_SNPs_129995 0 0 1 0 1 TBC1D19 chr4:26585914 5'GT 26585914 Upstream 96bp
chr1 150280533 150280533 1 + T C BLCA 150280533 + 150280513 150280553 41 ATTAAGCATCGGCGGTATTATGAGAAGCCATGCCGCCGGCG ATTAAGCATCGGCGGTATTACGAGAAGCCATGCCGCCGGCG Direct Gain 0 0.976626603983624 0 0.851639807224274 prediction 0.953253207967248 Functional Gain - MRPS21 ENSG00000187145 CDS Human other chr1:150280533 chr1:150280533 synonymous SNV . 0 21 hm5C_associated_SNPs_130008 0 0 1 0 1 MRPS21 chr1:150280482 3'AG 150280482 Downstream 52bp
chr6 7590554 7590554 1 + G C LUSC 7590554 + 7590534 7590574 41 AGGAGGAGCTGAACGAGTTCGTGGAGAGCGGCTGCCGGACG AGGAGGAGCTGAACGAGTTCCTGGAGAGCGGCTGCCGGACG Direct Gain 0 0.97660059810312 0 0.881253838539124 prediction 0.953201196206241 Functional Gain - SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7590554 chr6:7590554 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_130009 0 0 1 0 1 SNRNP48 chr6:7590646 5'GT 7590646 Upstream 93bp
chr17 30771560 30771560 1 + G C BRCA 30771560 + 30771540 30771580 41 AGATGGCGGCGGCGGCGGTGGTGGAGTTCCAGAGAGCCCAG AGATGGCGGCGGCGGCGGTGCTGGAGTTCCAGAGAGCCCAG Direct Gain 0 0.975912316165483 0 0.819609344005585 prediction 0.951824632330967 Functional Gain - PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30771560 chr17:30771560 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_130020 0 0 1 0 1 PSMD11 chr17:30771632 5'GT 30771632 Upstream 73bp
chr1 154956407 154956407 1 + T C UCEC 154956407 + 154956387 154956427 41 CCGTGCTTGCGACCCCTATTTGGGGGTCTGGGTGGCTACTG CCGTGCTTGCGACCCCTATTCGGGGGTCTGGGTGGCTACTG Direct Gain 0 0.975806318354447 0 0.991718769073486 prediction 0.951612636708894 Functional Gain - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154956407 chr1:154956407 synonymous SNV . 0 21 hm5C_associated_SNPs_130024 0 0 1 0 1 FLAD1 chr1:154956318 3'AG 154956318 Downstream 90bp
chr20 42087020 42087020 1 + G C BLCA 42087020 + 42087000 42087040 41 GGTACGGCTTCGTGGAGTTCGAGGACTCCCGCGACGCCGAC GGTACGGCTTCGTGGAGTTCCAGGACTCCCGCGACGCCGAC Direct Gain 0 0.975794223668786 0 0.881306171417236 prediction 0.951588447337572 Functional Gain - SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42087020 chr20:42087020 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_130025 0 0 1 0 1 SRSF6 chr20:42087001 3'AG 42087001 Downstream 20bp
chr1 236341802 236341802 1 + T C BRCA 236341802 + 236341782 236341822 41 TGCTGGTAAAGACGGGAAATTGGGAGAGGAAGGTTATCGTC TGCTGGTAAAGACGGGAAATCGGGAGAGGAAGGTTATCGTC Direct Gain 0 0.975575655599094 0 0.868076324462891 prediction 0.951151311198188 Functional Gain - GPR137B ENSG00000077585 CDS Human protein_coding chr1:236341802 chr1:236341802 nonsynonymous SNV 0.115 0 21 hm5C_associated_SNPs_130026 0 0 1 1 1 GPR137B chr1:236341714 3'AG 236341714 Downstream 89bp
chr20 5987125 5987125 1 + G C rs568654866 5987125 + 5987105 5987145 41 CGCGGGGAAGGCGGCTCCCAGGCCAGCGGCCGGAGCGGGCG CGCGGGGAAGGCGGCTCCCACGCCAGCGGCCGGAGCGGGCG Direct Gain 0 0.975442646268028 0 0.960296392440796 prediction 0.950885292536057 Functional Gain - CRLS1 ENSG00000088766 CDS Human protein_coding chr20:5987125 chr20:5987125 nonsynonymous SNV 0.025 0 21 hm5C_associated_SNPs_130030 0 0 1 0 1 CRLS1 chr20:5987198 5'GT 5987198 Upstream 74bp
chr6 43484895 43484895 1 + G C OV 43484895 + 43484875 43484915 41 ATGCGGAGCCGCGTGGTTCTGGGGGAGTTTGGGGTTCGCAA ATGCGGAGCCGCGTGGTTCTCGGGGAGTTTGGGGTTCGCAA Direct Gain 0 0.975248080056684 0 0.953598141670227 prediction 0.950496160113368 Functional Gain - POLR1C ENSG00000171453 CDS Human protein_coding chr6:43484895 chr6:43484895 synonymous SNV . 0 21 hm5C_associated_SNPs_130032 0 0 1 0 1 POLR1C chr6:43484916 5'GT 43484916 Upstream 22bp
chr10 94835035 94835035 1 + T C UCEC 94835035 + 94835015 94835055 41 AGCTGTTGATCGAGCACTCGTGGGAGAGGGGAGAGCGGCTG AGCTGTTGATCGAGCACTCGCGGGAGAGGGGAGAGCGGCTG Direct Gain 0 0.975230336179232 0 0.912487506866455 prediction 0.950460672358464 Functional Gain - CYP26A1 ENSG00000095596 CDS Human protein_coding chr10:94835035 chr10:94835035 nonsynonymous SNV 0.999 0 21 hm5C_associated_SNPs_130033 0 0 0 0 1 CYP26A1 chr10:94835064 5'GT 94835064 Upstream 30bp
chr1 110585728 110585728 1 + G C CESC 110585728 + 110585708 110585748 41 AGTGCACGCTAGGCGGCTTTGAGGAGCTGCAGAGCATGAAG AGTGCACGCTAGGCGGCTTTCAGGAGCTGCAGAGCATGAAG Direct Gain 0 0.975169204766203 0 0.970048904418945 prediction 0.950338409532407 Functional Gain - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110585728 chr1:110585728 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_130036 0 0 1 0 1 STRIP1 chr1:110585710 3'AG 110585710 Downstream 19bp
chr1 153617603 153617603 1 + G C rs148930480 153617603 + 153617583 153617623 41 AGGCCGAGGCCGTGGACGAGGGAGAGGTGCCCTTGCTCGCC AGGCCGAGGCCGTGGACGAGCGAGAGGTGCCCTTGCTCGCC Direct Gain 0 0.97502707722443 0 0.740226268768311 prediction 0.950054154448861 Functional Gain - CHTOP ENSG00000160679 CDS Human protein_coding chr1:153617603 chr1:153617603 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_130044 0 0 1 0 1 CHTOP chr1:153617540 3'AG 153617540 Downstream 64bp
chr11 120201131 120201131 1 + A C LUAD 120201131 + 120201111 120201151 41 TTTAGCATCTGGCGCTTTGCATGGAGGAAGAGCATCAAGAA TTTAGCATCTGGCGCTTTGCCTGGAGGAAGAGCATCAAGAA Direct Gain 0 0.974956543944261 0 0.888484477996826 prediction 0.949913087888521 Functional Gain - TMEM136 ENSG00000181264 CDS Human protein_coding chr11:120201131 chr11:120201131 synonymous SNV . 0 21 hm5C_associated_SNPs_130049 0 0 0 0 1 TMEM136 chr11:120201116 3'AG 120201116 Downstream 16bp
chr20 32441367 32441367 1 + T C rs114112565 32441367 + 32441347 32441387 41 ACTGGGCTGGATCCATGTAATGGGGTCCAGCGCTGGCTGGG ACTGGGCTGGATCCATGTAACGGGGTCCAGCGCTGGCTGGG Direct Gain 0 0.974934276189644 0 0.979122638702393 prediction 0.949868552379287 Functional Gain - CHMP4B ENSG00000101421 UTR3 Human protein_coding chr20:32441367 chr20:32441367 . . 0 21 hm5C_associated_SNPs_130050 1 0 1 0 1 CHMP4B chr20:32441302 3'AG 32441302 Downstream 66bp
chr2 201478612 201478612 1 + G C BRCA 201478612 + 201478592 201478632 41 GCTCGGCGCCAGGTGGGAAAGTGGAGTTCAAGAGGACTCTC GCTCGGCGCCAGGTGGGAAACTGGAGTTCAAGAGGACTCTC Direct Gain 0 0.974723178898559 0 0.814274370670319 prediction 0.949446357797117 Functional Gain - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201478612 chr2:201478612 nonsynonymous SNV 0.893 2 21 hm5C_associated_SNPs_130057 0 0 0 0 2 AOX1 chr2:201478527 3'AG 201478527 Downstream 86bp
chr2 201478612 201478612 1 + G C BRCA 201478612 + 201478592 201478632 41 GCTCGGCGCCAGGTGGGAAAGTGGAGTTCAAGAGGACTCTC GCTCGGCGCCAGGTGGGAAACTGGAGTTCAAGAGGACTCTC Direct Gain 0 0.974723178898559 0 0.814274370670319 prediction 0.949446357797117 Functional Gain - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201478612 chr2:201478612 nonsynonymous SNV 0.893 2 21 hm5C_associated_SNPs_130057 0 0 0 0 2 AOX1 chr2:201478689 5'GT 201478689 Upstream 78bp
chr19 53952872 53952872 1 + T C LUAD 53952872 + 53952852 53952892 41 GACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCCTGG GACGTGATGCTGGAGAATTACAGGAACCTGGTCTCCCCTGG Direct Gain 0 0.974688549127074 0 0.868295252323151 prediction 0.949377098254148 Functional Gain - ZNF761;ZNF765-ZNF761 ENSG00000160336 ncRNA_exonic Human protein_coding chr19:53952872 chr19:53952872 . . 0 21 hm5C_associated_SNPs_130060 0 0 0 0 1 ZNF761;ZNF765-ZNF761 chr19:53952892 5'GT 53952892 Upstream 21bp
chr1 86919096 86919096 1 + G C HNSC 86919096 + 86919076 86919116 41 GGAAATCAGTAGGCAGAAATGAGGAGGAGCGAAAGTGGGGC GGAAATCAGTAGGCAGAAATCAGGAGGAGCGAAAGTGGGGC Direct Gain 0 0.97462988492673 0 0.922987341880798 prediction 0.94925976985346 Functional Gain - CLCA2 ENSG00000137975 CDS Human protein_coding chr1:86919096 chr1:86919096 nonsynonymous SNV 0.013 0 21 hm5C_associated_SNPs_130062 0 0 0 0 1 CLCA2 chr1:86919052 3'AG 86919052 Downstream 45bp
chr21 26934559 26934559 1 + T C rs184440338 26934559 + 26934539 26934579 41 GGGAACCAAGGAGACGCTCCTGGCACTGCAGGTACGCCGAC GGGAACCAAGGAGACGCTCCCGGCACTGCAGGTACGCCGAC Direct Gain 0 0.974599661156581 0 0.672082364559174 prediction 0.949199322313161 Functional Gain - MIR155HG ENSG00000234883 ncRNA_exonic Human lincRNA chr21:26934559 chr21:26934559 . . 0 21 hm5C_associated_SNPs_130064 0 0 0 0 1 MIR155HG chr21:26934569 5'GT 26934569 Upstream 11bp
chr4 186321603 186321603 1 - A G UCEC 186321603 - 186321583 186321623 41 GGATGGAAGGGCCCAGATTTTTGGAACAAGGATGCATACTA GGATGGAAGGGCCCAGATTTCTGGAACAAGGATGCATACTA Direct Gain 0 0.974552255988102 0 0.942708194255829 prediction 0.949104511976205 Functional Gain - UFSP2 ENSG00000109775 CDS Human protein_coding chr4:186321603 chr4:186321603 synonymous SNV . 0 21 hm5C_associated_SNPs_130066 0 0 0 0 1 UFSP2 chr4:186321632 3'AG 186321632 Downstream 30bp
chr1 86900332 86900332 1 + T C rs17449526 86900332 + 86900312 86900352 41 CACCACAGCTTTCCCATGAATGGGACTGAGCTTCCACCTCC CACCACAGCTTTCCCATGAACGGGACTGAGCTTCCACCTCC Direct Gain 0 0.974541186841692 0 0.317404985427856 prediction 0.949082373683384 Functional Gain - CLCA2 ENSG00000137975 CDS Human protein_coding chr1:86900332 chr1:86900332 synonymous SNV . 0 21 hm5C_associated_SNPs_130067 0 0 0 0 1 CLCA2 chr1:86900428 5'GT 86900428 Upstream 97bp
chr10 120863692 120863692 1 + T C rs143581957 120863692 + 120863672 120863712 41 GGCGGACACTCAGCTGATGCTTGGAGTCGGGCTGATCGGTG GGCGGACACTCAGCTGATGCCTGGAGTCGGGCTGATCGGTG Direct Gain 0 0.974174529516196 0 0.756062746047974 prediction 0.948349059032392 Functional Gain - FAM45A ENSG00000119979 CDS Human protein_coding chr10:120863692 chr10:120863692 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_130083 0 0 1 0 1 FAM45A chr10:120863709 5'GT 120863709 Upstream 18bp
chr5 130506715 130506715 1 + T C SKCM 130506715 + 130506695 130506735 41 GGCCGCGGTGAGGAGAGCCATGGGACGGGCAGTCAAGGTGA GGCCGCGGTGAGGAGAGCCACGGGACGGGCAGTCAAGGTGA Direct Gain 0 0.974163623643551 0 0.823519766330719 prediction 0.948327247287103 Functional Gain - LYRM7 ENSG00000186687 CDS Human protein_coding chr5:130506715 chr5:130506715 nonsynonymous SNV 0.831 4 21 hm5C_associated_SNPs_130085 0 0 1 0 1 LYRM7 chr5:130506731 5'GT 130506731 Upstream 17bp
chr6 130376371 130376371 1 + G C HNSC 130376371 + 130376351 130376391 41 GCAGAGAGCACGGAGGAAAAGACGAGGGGATTCGGCTGTAC GCAGAGAGCACGGAGGAAAACACGAGGGGATTCGGCTGTAC Direct Gain 0 0.974061050859823 0 0.375844389200211 prediction 0.948122101719645 Functional Gain - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130376371 chr6:130376371 nonsynonymous SNV 0.959 2 21 hm5C_associated_SNPs_130087 0 0 1 0 1 L3MBTL3 chr6:130376316 3'AG 130376316 Downstream 56bp
chr3 101298701 101298701 1 + T C UCEC 101298701 + 101298681 101298721 41 TCCAGTAATGGAGGGGAAAGTTCCAGTCGCAGCGCTGAGAA TCCAGTAATGGAGGGGAAAGCTCCAGTCGCAGCGCTGAGAA Direct Gain 0 0.974053233068713 0 0.916463971138 prediction 0.948106466137427 Functional Gain - PCNP ENSG00000081154 CDS Human protein_coding chr3:101298701 chr3:101298701 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_130088 0 0 1 0 2 PCNP chr3:101298634 3'AG 101298634 Downstream 68bp
chr3 101298701 101298701 1 + T C UCEC 101298701 + 101298681 101298721 41 TCCAGTAATGGAGGGGAAAGTTCCAGTCGCAGCGCTGAGAA TCCAGTAATGGAGGGGAAAGCTCCAGTCGCAGCGCTGAGAA Direct Gain 0 0.974053233068713 0 0.916463971138 prediction 0.948106466137427 Functional Gain - PCNP ENSG00000081154 CDS Human protein_coding chr3:101298701 chr3:101298701 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_130088 0 0 1 0 2 PCNP chr3:101298686 3'AG 101298686 Downstream 16bp
chr12 132271113 132271113 1 + T C rs7136643 132271113 + 132271093 132271133 41 AGCCGCAGCCCTGGGGCCAGTAGGAAGCGGACCCGCTCCAG AGCCGCAGCCCTGGGGCCAGCAGGAAGCGGACCCGCTCCAG Direct Gain 0 0.97393417660645 0 0.891401946544647 prediction 0.947868353212901 Functional Gain - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132271113 chr12:132271113 synonymous SNV . 0 21 hm5C_associated_SNPs_130091 0 0 1 0 1 SFSWAP chr12:132271133 5'GT 132271133 Upstream 21bp
chrX 114540824 114540824 1 + G C ACC 114540824 + 114540804 114540844 41 AGAAGAATCAAGGCCAGTCAGAGGGGAACCAGCATCAATCA AGAAGAATCAAGGCCAGTCACAGGGGAACCAGCATCAATCA Direct Gain 0 0.973911056857803 0 0.87787938117981 prediction 0.947822113715606 Functional Gain - LUZP4 ENSG00000102021 CDS Human protein_coding chrX:114540824 chrX:114540824 nonsynonymous SNV 0.386 1 21 hm5C_associated_SNPs_130092 0 0 0 0 1 LUZP4 chrX:114540770 3'AG 114540770 Downstream 55bp
chr5 94891059 94891059 1 + G C rs61733082 94891059 + 94891039 94891079 41 CGGAGCAGGGGAGCAGAGGCGGAGAGCAGCCAAAGCGCCCA CGGAGCAGGGGAGCAGAGGCCGAGAGCAGCCAAAGCGCCCA Direct Gain 0 0.973520374925024 0 0.797449588775635 prediction 0.947040749850049 Functional Gain - ARSK ENSG00000164291 CDS Human protein_coding chr5:94891059 chr5:94891059 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_130104 0 0 1 0 1 ARSK chr5:94891108 5'GT 94891108 Upstream 50bp
chr1 26737909 26737909 1 + G C LUSC 26737909 + 26737889 26737929 41 AGGCGGCAGAAGAGGCGCCCGAGGAGGCGCCGGAGGACGCG AGGCGGCAGAAGAGGCGCCCCAGGAGGCGCCGGAGGACGCG Direct Gain 0 0.973049495810793 0 0.803097128868103 prediction 0.946098991621586 Functional Gain - LIN28A ENSG00000131914 CDS Human protein_coding chr1:26737909 chr1:26737909 nonsynonymous SNV 0.982 1 21 hm5C_associated_SNPs_130114 0 0 0 0 1 LIN28A chr1:26737877 3'AG 26737877 Downstream 33bp
chr12 77158068 77158068 1 + T C UCEC 77158068 + 77158048 77158088 41 TGGCGGACGGCCCGGATGAGTACGATACCGAAGCGGGCTGT TGGCGGACGGCCCGGATGAGCACGATACCGAAGCGGGCTGT Direct Gain 0 0.972826566877397 0 0.498633146286011 prediction 0.945653133754794 Functional Gain - ZDHHC17 ENSG00000186908 CDS Human protein_coding chr12:77158068 chr12:77158068 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_130121 0 0 1 1 1 ZDHHC17 chr12:77158109 5'GT 77158109 Upstream 42bp
chr5 178293284 178293284 1 + T C rs567321883 178293284 + 178293264 178293304 41 ACGTGGCTGTGCTCTTTACCTGGGATGAGTGGAGAAAGCTG ACGTGGCTGTGCTCTTTACCCGGGATGAGTGGAGAAAGCTG Direct Gain 0 0.972480695591558 0 0.914090871810913 prediction 0.944961391183117 Functional Gain - ZNF354B ENSG00000178338 CDS Human protein_coding chr5:178293284 chr5:178293284 nonsynonymous SNV 0.116 0 21 hm5C_associated_SNPs_130132 0 0 1 0 2 ZNF354B chr5:178293245 3'AG 178293245 Downstream 40bp
chr5 178293284 178293284 1 + T C rs567321883 178293284 + 178293264 178293304 41 ACGTGGCTGTGCTCTTTACCTGGGATGAGTGGAGAAAGCTG ACGTGGCTGTGCTCTTTACCCGGGATGAGTGGAGAAAGCTG Direct Gain 0 0.972480695591558 0 0.914090871810913 prediction 0.944961391183117 Functional Gain - ZNF354B ENSG00000178338 CDS Human protein_coding chr5:178293284 chr5:178293284 nonsynonymous SNV 0.116 0 21 hm5C_associated_SNPs_130132 0 0 1 0 2 ZNF354B chr5:178293371 5'GT 178293371 Upstream 88bp
chr11 66258775 66258775 1 + G C SKCM 66258775 + 66258755 66258795 41 GCTGAAGAGCTATGAATTCCGGGGAAGCCCTTTCCAGGTGA GCTGAAGAGCTATGAATTCCCGGGAAGCCCTTTCCAGGTGA Direct Gain 0 0.972397951546954 0 0.888719439506531 prediction 0.944795903093908 Functional Gain - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66258775 chr11:66258775 nonsynonymous SNV 0.939 0 21 hm5C_associated_SNPs_130134 0 0 1 0 2 DPP3 chr11:66258724 3'AG 66258724 Downstream 52bp
chr11 66258775 66258775 1 + G C SKCM 66258775 + 66258755 66258795 41 GCTGAAGAGCTATGAATTCCGGGGAAGCCCTTTCCAGGTGA GCTGAAGAGCTATGAATTCCCGGGAAGCCCTTTCCAGGTGA Direct Gain 0 0.972397951546954 0 0.888719439506531 prediction 0.944795903093908 Functional Gain - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66258775 chr11:66258775 nonsynonymous SNV 0.939 0 21 hm5C_associated_SNPs_130134 0 0 1 0 2 DPP3 chr11:66258854 5'GT 66258854 Upstream 80bp
chr6 14131771 14131771 1 + G C BLCA 14131771 + 14131751 14131791 41 TTATTGGAGGGTGGTGAAGAGAGGATGGAGACACCCCAGGA TTATTGGAGGGTGGTGAAGACAGGATGGAGACACCCCAGGA Direct Gain 0 0.972184336394495 0 0.730854094028473 prediction 0.94436867278899 Functional Gain - CD83 ENSG00000112149 CDS Human protein_coding chr6:14131771 chr6:14131771 nonsynonymous SNV 0.289 0 21 hm5C_associated_SNPs_130143 0 0 0 0 1 CD83 chr6:14131751 3'AG 14131751 Downstream 21bp
chr3 161147187 161147187 1 + T C rs545119571 161147187 + 161147167 161147207 41 GTGGTCAAGCTTGTTTCTCCTGGGAGCGCTCTTCCGAGGAT GTGGTCAAGCTTGTTTCTCCCGGGAGCGCTCTTCCGAGGAT Direct Gain 0 0.972022907093162 0 0.852578520774841 prediction 0.944045814186323 Functional Gain - LINC02067 ENSG00000234851;ENSG00000240567 ncRNA_exonic Human other chr3:161147187 chr3:161147187 . . 0 21 hm5C_associated_SNPs_130147 0 0 0 0 2 LINC02067 chr3:161147133 3'AG 161147133 Downstream 55bp
chr3 161147187 161147187 1 + T C rs545119571 161147187 + 161147167 161147207 41 GTGGTCAAGCTTGTTTCTCCTGGGAGCGCTCTTCCGAGGAT GTGGTCAAGCTTGTTTCTCCCGGGAGCGCTCTTCCGAGGAT Direct Gain 0 0.972022907093162 0 0.852578520774841 prediction 0.944045814186323 Functional Gain - LINC02067 ENSG00000234851;ENSG00000240567 ncRNA_exonic Human other chr3:161147187 chr3:161147187 . . 0 21 hm5C_associated_SNPs_130147 0 0 0 0 2 LINC02067 chr3:161147251 5'GT 161147251 Upstream 65bp
chr16 29809711 29809711 1 + G C LUAD 29809711 + 29809691 29809731 41 GCAGGTTTGATGCCTTCTATGGGGAGAGGAGTACTCAGCAG GCAGGTTTGATGCCTTCTATCGGGAGAGGAGTACTCAGCAG Direct Gain 0 0.971812535916937 0 0.987464547157288 prediction 0.943625071833873 Functional Gain - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29809711 chr16:29809711 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_130155 0 0 1 0 1 KIF22 chr16:29809695 3'AG 29809695 Downstream 17bp
chr1 57347200 57347200 1 + G C BLCA 57347200 + 57347180 57347220 41 AGTGTGAGACGGTATACAATGGGGAATGGAGGGAGCTTCGA AGTGTGAGACGGTATACAATCGGGAATGGAGGGAGCTTCGA Direct Gain 0 0.971709021505372 0 0.844014644622803 prediction 0.943418043010744 Functional Gain - C8A ENSG00000157131 CDS Human protein_coding chr1:57347200 chr1:57347200 nonsynonymous SNV 0.973 4 21 hm5C_associated_SNPs_130156 0 0 1 0 1 C8A chr1:57347118 3'AG 57347118 Downstream 83bp
chr11 67377958 67377958 1 + G C BLCA 67377958 + 67377938 67377978 41 CGGGGCTGGGGCCTACATCTGTGGAGAGGAGACAGCGCTCA CGGGGCTGGGGCCTACATCTCTGGAGAGGAGACAGCGCTCA Direct Gain 0 0.971448011093533 0 0.942551851272583 prediction 0.942896022187065 Functional Gain - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67377958 chr11:67377958 nonsynonymous SNV 0.999 5 21 hm5C_associated_SNPs_130166 0 0 1 0 1 NDUFV1 chr11:67378041 5'GT 67378041 Upstream 84bp
chr17 73518335 73518335 1 + G C rs577958629 73518335 + 73518315 73518355 41 CTGCAGCGGCGGCAGGTGCAGAGGAGCCAGCGCCGGGCCCC CTGCAGCGGCGGCAGGTGCACAGGAGCCAGCGCCGGGCCCC Direct Gain 0 0.971420364920546 0 0.841316878795624 prediction 0.942840729841092 Functional Gain - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73518335 chr17:73518335 nonsynonymous SNV 0.028 1 21 hm5C_associated_SNPs_130167 0 0 1 0 1 TSEN54 chr17:73518414 5'GT 73518414 Upstream 80bp
chr20 61436347 61436347 1 + G C rs560795439 61436347 + 61436327 61436367 41 GGGACGAGGACGAGGAGTCGGAGGAGCCGCGGGCGGCGCGG GGGACGAGGACGAGGAGTCGCAGGAGCCGCGGGCGGCGCGG Direct Gain 0 0.971398915406765 0 0.948953866958618 prediction 0.942797830813531 Functional Gain - OGFR ENSG00000060491 CDS Human protein_coding chr20:61436347 chr20:61436347 nonsynonymous SNV 0.246 0 21 hm5C_associated_SNPs_130169 0 0 1 0 1 OGFR chr20:61436382 5'GT 61436382 Upstream 36bp
chr2 220097300 220097300 1 + T C UCEC 220097300 + 220097280 220097320 41 GATCGGGAGAGGGCTACATTTGAGAAGTTGAGCCGACCCCC GATCGGGAGAGGGCTACATTCGAGAAGTTGAGCCGACCCCC Direct Gain 0 0.971146618953748 0 0.943705677986145 prediction 0.942293237907496 Functional Gain - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220097300 chr2:220097300 synonymous SNV . 0 21 hm5C_associated_SNPs_130175 0 0 1 0 1 ANKZF1 chr2:220097212 3'AG 220097212 Downstream 89bp
chrX 47270144 47270144 1 + G C CESC 47270144 + 47270124 47270164 41 GAGAAGAGCTGTGGATATTAGAGGAGGAATCCTCAGGCCAT GAGAAGAGCTGTGGATATTACAGGAGGAATCCTCAGGCCAT Direct Gain 0 0.970765619416776 0 0.88253653049469 prediction 0.941531238833551 Functional Gain - ZNF157 ENSG00000147117 CDS Human protein_coding chrX:47270144 chrX:47270144 nonsynonymous SNV 0.931 1 21 hm5C_associated_SNPs_130183 0 0 0 0 2 ZNF157 chrX:47270079 3'AG 47270079 Downstream 66bp
chrX 47270144 47270144 1 + G C CESC 47270144 + 47270124 47270164 41 GAGAAGAGCTGTGGATATTAGAGGAGGAATCCTCAGGCCAT GAGAAGAGCTGTGGATATTACAGGAGGAATCCTCAGGCCAT Direct Gain 0 0.970765619416776 0 0.88253653049469 prediction 0.941531238833551 Functional Gain - ZNF157 ENSG00000147117 CDS Human protein_coding chrX:47270144 chrX:47270144 nonsynonymous SNV 0.931 1 21 hm5C_associated_SNPs_130183 0 0 0 0 2 ZNF157 chrX:47270174 5'GT 47270174 Upstream 31bp
chr4 75959144 75959144 1 + T C SKCM 75959144 + 75959124 75959164 41 TGCCGTGGTGCTGCTGGTGTTTGGAGTTGCAGCCTACCTAA TGCCGTGGTGCTGCTGGTGTCTGGAGTTGCAGCCTACCTAA Direct Gain 0 0.97070437039603 0 0.872188925743103 prediction 0.94140874079206 Functional Gain - PARM1 ENSG00000169116 CDS Human protein_coding chr4:75959144 chr4:75959144 nonsynonymous SNV 0.927 4 21 hm5C_associated_SNPs_130184 0 0 1 0 2 PARM1 chr4:75959093 3'AG 75959093 Downstream 52bp
chr4 75959144 75959144 1 + T C SKCM 75959144 + 75959124 75959164 41 TGCCGTGGTGCTGCTGGTGTTTGGAGTTGCAGCCTACCTAA TGCCGTGGTGCTGCTGGTGTCTGGAGTTGCAGCCTACCTAA Direct Gain 0 0.97070437039603 0 0.872188925743103 prediction 0.94140874079206 Functional Gain - PARM1 ENSG00000169116 CDS Human protein_coding chr4:75959144 chr4:75959144 nonsynonymous SNV 0.927 4 21 hm5C_associated_SNPs_130184 0 0 1 0 2 PARM1 chr4:75959171 5'GT 75959171 Upstream 28bp
chrX 147026500 147026500 1 + G C LUSC 147026500 + 147026480 147026520 41 GAGGGAGAGCTTCCTGCGCAGAGGAGACGGACGGCGGCGTG GAGGGAGAGCTTCCTGCGCACAGGAGACGGACGGCGGCGTG Direct Gain 0 0.970073209658502 0 0.837321996688843 prediction 0.940146419317004 Functional Gain - FMR1 ENSG00000102081 CDS Human protein_coding chrX:147026500 chrX:147026500 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_130207 0 0 1 0 2 FMR1 chrX:147026464 3'AG 147026464 Downstream 37bp
chrX 147026500 147026500 1 + G C LUSC 147026500 + 147026480 147026520 41 GAGGGAGAGCTTCCTGCGCAGAGGAGACGGACGGCGGCGTG GAGGGAGAGCTTCCTGCGCACAGGAGACGGACGGCGGCGTG Direct Gain 0 0.970073209658502 0 0.837321996688843 prediction 0.940146419317004 Functional Gain - FMR1 ENSG00000102081 CDS Human protein_coding chrX:147026500 chrX:147026500 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_130207 0 0 1 0 2 FMR1 chrX:147026571 5'GT 147026571 Upstream 72bp
chr11 59860886 59860886 1 + T C BLCA 59860886 + 59860866 59860906 41 TTATCAGGTGAGAGGAAGCCTGGGAGCAAACACTGCCAGCA TTATCAGGTGAGAGGAAGCCCGGGAGCAAACACTGCCAGCA Direct Gain 0 0.969933674591862 0 0.85541296005249 prediction 0.939867349183724 Functional Gain - MS4A2 ENSG00000149534 CDS Human protein_coding chr11:59860886 chr11:59860886 nonsynonymous SNV 0.986 4 21 hm5C_associated_SNPs_130211 0 0 0 0 1 MS4A2 chr11:59860873 3'AG 59860873 Downstream 14bp
chr6 17539623 17539623 1 + G C HNSC 17539623 + 17539603 17539643 41 TCGAGAATGAAGGCAAAAAAGAGGAATCTTCTCCTTCACGC TCGAGAATGAAGGCAAAAAACAGGAATCTTCTCCTTCACGC Direct Gain 0 0.969874915964676 0 0.865282416343689 prediction 0.939749831929352 Functional Gain - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17539623 chr6:17539623 nonsynonymous SNV 0.850 0 21 hm5C_associated_SNPs_130213 0 0 0 0 1 CAP2 chr6:17539689 5'GT 17539689 Upstream 67bp
chr14 32030722 32030722 1 + G C rs77539990 32030722 + 32030702 32030742 41 CGGGGCCACTGCCCCGCTTGGGGGAAGCCGAGCGATGGTTT CGGGGCCACTGCCCCGCTTGCGGGAAGCCGAGCGATGGTTT Direct Gain 0 0.969868946966008 0 0.943747043609619 prediction 0.939737893932016 Functional Gain - NUBPL ENSG00000151413 CDS Human protein_coding chr14:32030722 chr14:32030722 nonsynonymous SNV 0.005 0 21 hm5C_associated_SNPs_130214 0 0 1 0 1 NUBPL chr14:32030753 5'GT 32030753 Upstream 32bp
chr1 158325845 158325845 1 + G C CESC 158325845 + 158325825 158325865 41 GGAGGCAGCTGGCCTGTCCTGTCGGGTGAAACACAGCAGTC GGAGGCAGCTGGCCTGTCCTCTCGGGTGAAACACAGCAGTC Direct Gain 0 0.969787836677941 0 0.816658496856689 prediction 0.939575673355883 Functional Gain - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325845 chr1:158325845 nonsynonymous SNV 0.505 4 21 hm5C_associated_SNPs_130217 0 0 0 0 1 CD1E chr1:158325895 5'GT 158325895 Upstream 51bp
chr11 45907400 45907400 1 + G C READ 45907400 + 45907380 45907420 41 GCGAGAAAGCGGCGGCCTGGGAGGGGGGGCCGCGTCCCCGC GCGAGAAAGCGGCGGCCTGGCAGGGGGGGCCGCGTCCCCGC Direct Gain 0 0.96974821193267 0 0.931573629379272 prediction 0.93949642386534 Functional Gain - MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45907400 chr11:45907400 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_130218 0 0 0 0 1 MAPK8IP1 chr11:45907472 5'GT 45907472 Upstream 73bp
chr5 68665291 68665291 1 + G C SKCM 68665291 + 68665271 68665311 41 CCCGGCCGCGCGCCCTGACCGGTGAGCAGGATGTTCGGAAG CCCGGCCGCGCGCCCTGACCCGTGAGCAGGATGTTCGGAAG Direct Gain 0 0.969604308689093 0 0.745857238769531 prediction 0.939208617378186 Functional Gain - AK6 ENSG00000085231 CDS Human protein_coding chr5:68665291 chr5:68665291 synonymous SNV . 0 21 hm5C_associated_SNPs_130226 0 0 0 0 1 AK6 chr5:68665291 5'GT 68665291 Upstream 1bp
chr6 122720937 122720937 1 + G C BLCA 122720937 + 122720917 122720957 41 GCAAGCTGTGGACGCTTGTGGAGGAAACCCACACTAACGAG GCAAGCTGTGGACGCTTGTGCAGGAAACCCACACTAACGAG Direct Gain 0 0.969592646258449 0 0.825771808624268 prediction 0.939185292516897 Functional Gain - HSF2 ENSG00000025156 CDS Human protein_coding chr6:122720937 chr6:122720937 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_130228 0 0 1 0 1 HSF2 chr6:122720975 5'GT 122720975 Upstream 39bp
chr11 67376948 67376948 1 + G C HNSC 67376948 + 67376928 67376968 41 AGTATCTGGTGGTGAACGCAGACGAGGGGGAGCCGGGCACC AGTATCTGGTGGTGAACGCACACGAGGGGGAGCCGGGCACC Direct Gain 0 0.969521807341792 0 0.724207282066345 prediction 0.939043614683583 Functional Gain - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67376948 chr11:67376948 nonsynonymous SNV 0.935 5 21 hm5C_associated_SNPs_130230 0 0 1 0 1 NDUFV1 chr11:67376923 3'AG 67376923 Downstream 26bp
chr11 764854 764854 1 + T C rs7939103 764854 + 764834 764874 41 AATGGAAAGTAGCGCATCCCTGAGGCTGGACTCCAGATCTG AATGGAAAGTAGCGCATCCCCGAGGCTGGACTCCAGATCTG Direct Gain 0 0.969396615470314 0 0.80142730474472 prediction 0.938793230940628 Functional Gain - TALDO1 ENSG00000177156 UTR3 Human protein_coding chr11:764854 chr11:764854 . . 0 21 hm5C_associated_SNPs_130234 1 0 1 0 1 TALDO1 chr11:764813 3'AG 764813 Downstream 42bp
chr5 33453497 33453497 1 + G C LUAD 33453497 + 33453477 33453517 41 CCTTGGAGCTTCTCAAGTTTGAGGATGAGGAAGCTCAGGCA CCTTGGAGCTTCTCAAGTTTCAGGATGAGGAAGCTCAGGCA Direct Gain 0 0.969258087476541 0 0.926743507385254 prediction 0.938516174953083 Functional Gain - TARS ENSG00000113407 CDS Human protein_coding chr5:33453497 chr5:33453497 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_130238 0 0 1 0 1 TARS chr5:33453517 5'GT 33453517 Upstream 21bp
chr16 20911785 20911785 1 + G C rs150589892 20911785 + 20911765 20911805 41 CAGCTCCAGGAGGGAGAATGGGAGAGGGGCAAGGAGGGAAC CAGCTCCAGGAGGGAGAATGCGAGAGGGGCAAGGAGGGAAC Direct Gain 0 0.968895810372894 0 0.856296360492706 prediction 0.937791620745787 Functional Gain - LYRM1 ENSG00000102897 UTR5 Human protein_coding chr16:20911785 chr16:20911785 . . 0 21 hm5C_associated_SNPs_130246 0 0 1 0 1 LYRM1 chr16:20911857 5'GT 20911857 Upstream 73bp
chr19 51729309 51729309 1 + G C LUSC 51729309 + 51729289 51729329 41 GCTGGAGCTGGTGTGACTACGGAGAGAACCATCCAGCTCAA GCTGGAGCTGGTGTGACTACCGAGAGAACCATCCAGCTCAA Direct Gain 0 0.96835678142668 0 0.951133668422699 prediction 0.93671356285336 Functional Gain - CD33 ENSG00000105383 CDS Human protein_coding chr19:51729309 chr19:51729309 synonymous SNV . 0 21 hm5C_associated_SNPs_130263 0 0 0 0 1 CD33 chr19:51729337 5'GT 51729337 Upstream 29bp
chr5 8457852 8457852 1 + A C rs559131234 8457852 + 8457832 8457872 41 GGGAGGAGGTCGCGCTGTCCATGGGCGTCCTTGGCCTGCGC GGGAGGAGGTCGCGCTGTCCCTGGGCGTCCTTGGCCTGCGC Direct Gain 0 0.968340350676557 0 0.828224897384644 prediction 0.936680701353114 Functional Gain - MIR4458HG ENSG00000247516 ncRNA_exonic Human lincRNA chr5:8457852 chr5:8457852 . . 0 21 hm5C_associated_SNPs_130265 0 0 1 0 1 MIR4458HG chr5:8457879 5'GT 8457879 Upstream 28bp
chr1 219347247 219347247 1 + G C LUAD 219347247 + 219347227 219347267 41 TCAGCGATGGCGGCTGCGTCGGGGTCGGTTCTGCAGCGCTG TCAGCGATGGCGGCTGCGTCCGGGTCGGTTCTGCAGCGCTG Direct Gain 0 0.968235379569493 0 0.892237782478333 prediction 0.936470759138986 Functional Gain - LYPLAL1 ENSG00000143353 CDS Human protein_coding chr1:219347247 chr1:219347247 synonymous SNV . 0 21 hm5C_associated_SNPs_130270 0 0 1 0 1 LYPLAL1 chr1:219347323 5'GT 219347323 Upstream 77bp
chr17 38340572 38340572 1 + G C LUSC 38340572 + 38340552 38340592 41 CCTACCAGGGGCTGCTTCAAGAGGAAGAGGGGGCCGGCCAC CCTACCAGGGGCTGCTTCAACAGGAAGAGGGGGCCGGCCAC Direct Gain 0 0.968207388283094 0 0.867783486843109 prediction 0.936414776566189 Functional Gain - RAPGEFL1 ENSG00000108352 CDS Human protein_coding chr17:38340572 chr17:38340572 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_130271 0 0 0 0 1 RAPGEFL1 chr17:38340601 5'GT 38340601 Upstream 30bp
chr19 12296615 12296615 1 + G C HNSC 12296615 + 12296595 12296635 41 TTCAGGACTCGGTGGCTTTTGAGGATGTAGATGTGAACTTC TTCAGGACTCGGTGGCTTTTCAGGATGTAGATGTGAACTTC Direct Gain 0 0.968190765476471 0 0.928457617759705 prediction 0.936381530952942 Functional Gain - ZNF136 ENSG00000196646 CDS Human protein_coding chr19:12296615 chr19:12296615 nonsynonymous SNV 0.786 3 21 hm5C_associated_SNPs_130272 0 0 1 0 1 ZNF136 chr19:12296600 3'AG 12296600 Downstream 16bp
chr4 52709382 52709382 1 + G C rs557754859 52709382 + 52709362 52709402 41 GCGAGCGCGGGAGCCTGGGCGGCGAGCCGGGTGTGAGCTGC GCGAGCGCGGGAGCCTGGGCCGCGAGCCGGGTGTGAGCTGC Direct Gain 0 0.968175975107487 0 0.917407035827637 prediction 0.936351950214973 Functional Gain - DCUN1D4 ENSG00000109184 UTR5 Human protein_coding chr4:52709382 chr4:52709382 . . 0 21 hm5C_associated_SNPs_130274 0 0 1 0 1 DCUN1D4 chr4:52709433 5'GT 52709433 Upstream 52bp
chr1 228003539 228003539 1 + A C LUAD 228003539 + 228003519 228003559 41 CCACAGACAGCCAGAGAACCAGGGAATCTCCCTAACTGGCA CCACAGACAGCCAGAGAACCCGGGAATCTCCCTAACTGGCA Direct Gain 0 0.967937484705604 0 0.734653472900391 prediction 0.935874969411208 Functional Gain - PRSS38 ENSG00000185888 CDS Human protein_coding chr1:228003539 chr1:228003539 nonsynonymous SNV 0.005 1 21 hm5C_associated_SNPs_130278 0 0 0 0 1 PRSS38 chr1:228003565 5'GT 228003565 Upstream 27bp
chr18 12725500 12725500 1 + T C BLCA 12725500 + 12725480 12725520 41 AGTTCTTGGAGATTACTCTTTGGCAGTGGTCTTCCCCCTGC AGTTCTTGGAGATTACTCTTCGGCAGTGGTCTTCCCCCTGC Direct Gain 0 0.967811213373706 0 0.672155022621155 prediction 0.935622426747413 Functional Gain - PSMG2 ENSG00000128789 CDS Human protein_coding chr18:12725500 chr18:12725500 synonymous SNV . 0 21 hm5C_associated_SNPs_130283 0 0 1 1 1 PSMG2 chr18:12725438 3'AG 12725438 Downstream 63bp
chr20 44420682 44420682 1 + T C rs2664591 44420682 + 44420662 44420702 41 GCCGAGCAGCCGCGGGGACCTAGCGGGGCCGAGAGGGGCGG GCCGAGCAGCCGCGGGGACCCAGCGGGGCCGAGAGGGGCGG Direct Gain 0 0.967773991471065 0 0.829684615135193 prediction 0.935547982942131 Functional Gain - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44420682 chr20:44420682 synonymous SNV . 0 21 hm5C_associated_SNPs_130285 0 0 1 0 1 DNTTIP1 chr20:44420748 5'GT 44420748 Upstream 67bp
chr3 149205519 149205519 1 + A C rs571739504 149205519 + 149205499 149205539 41 TGCCTCATGGCCAATAGTACATGGGGCTACCCCTTCCACGA TGCCTCATGGCCAATAGTACCTGGGGCTACCCCTTCCACGA Direct Gain 0 0.96772383554403 0 0.816462278366089 prediction 0.93544767108806 Functional Gain - TM4SF4 ENSG00000169903 CDS Human protein_coding chr3:149205519 chr3:149205519 synonymous SNV . 0 21 hm5C_associated_SNPs_130288 0 0 0 0 1 TM4SF4 chr3:149205542 5'GT 149205542 Upstream 24bp
chr1 220316379 220316379 1 + T C UCEC 220316379 + 220316359 220316399 41 TGTGGAGAGTGCGTGTGCAATGCGAGACTCATTTCTTGGAA TGTGGAGAGTGCGTGTGCAACGCGAGACTCATTTCTTGGAA Direct Gain 0 0.967525025624295 0 0.779182553291321 prediction 0.935050051248591 Functional Gain - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220316379 chr1:220316379 nonsynonymous SNV 0.776 1 21 hm5C_associated_SNPs_130294 0 0 1 0 2 IARS2 chr1:220316286 3'AG 220316286 Downstream 94bp
chr1 220316379 220316379 1 + T C UCEC 220316379 + 220316359 220316399 41 TGTGGAGAGTGCGTGTGCAATGCGAGACTCATTTCTTGGAA TGTGGAGAGTGCGTGTGCAACGCGAGACTCATTTCTTGGAA Direct Gain 0 0.967525025624295 0 0.779182553291321 prediction 0.935050051248591 Functional Gain - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220316379 chr1:220316379 nonsynonymous SNV 0.776 1 21 hm5C_associated_SNPs_130294 0 0 1 0 2 IARS2 chr1:220316476 5'GT 220316476 Upstream 98bp
chr14 32030678 32030678 1 + T C LIHC 32030678 + 32030658 32030698 41 CAGCGTCTGCTGCTTTTTGGTGGGGTGTCGCTCCGGGCTGG CAGCGTCTGCTGCTTTTTGGCGGGGTGTCGCTCCGGGCTGG Direct Gain 0 0.967392993495307 0 0.93347704410553 prediction 0.934785986990614 Functional Gain - NUBPL ENSG00000151413 CDS Human protein_coding chr14:32030678 chr14:32030678 synonymous SNV . 0 21 hm5C_associated_SNPs_130303 0 0 1 0 1 NUBPL chr14:32030753 5'GT 32030753 Upstream 76bp
chr5 122110827 122110827 1 + T C COAD 122110827 + 122110807 122110847 41 CGAGAGGGAACCTCCTCCGCTGGGGGACGGGAAGCCCACCG CGAGAGGGAACCTCCTCCGCCGGGGGACGGGAAGCCCACCG Direct Gain 0 0.967329346743732 0 0.90629243850708 prediction 0.934658693487464 Functional Gain - SNX2 ENSG00000205302 CDS Human protein_coding chr5:122110827 chr5:122110827 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_130304 0 0 1 0 1 SNX2 chr5:122110906 5'GT 122110906 Upstream 80bp
chr9 94903903 94903903 1 + G C LUAD 94903903 + 94903883 94903923 41 CTTGGGCTGTCCGCCATACCGGGGGACCTGGATCCCCTGAC CTTGGGCTGTCCGCCATACCCGGGGACCTGGATCCCCTGAC Direct Gain 0 0.967276552421722 0 0.986475646495819 prediction 0.934553104843444 Functional Gain - LINC00475 ENSG00000225511 ncRNA_exonic Human lincRNA chr9:94903903 chr9:94903903 . . 0 21 hm5C_associated_SNPs_130308 0 0 0 0 1 LINC00475 chr9:94903932 5'GT 94903932 Upstream 30bp
chr19 36113809 36113809 1 + G C LUSC 36113809 + 36113789 36113829 41 CAGGCCAGGCCGCCCTCTCTGAGGAGCTCTGCCAGGGCCTG CAGGCCAGGCCGCCCTCTCTCAGGAGCTCTGCCAGGGCCTG Direct Gain 0 0.967188078617563 0 0.967785775661469 prediction 0.934376157235126 Functional Gain - HAUS5 ENSG00000249115 CDS Human protein_coding chr19:36113809 chr19:36113809 nonsynonymous SNV 0.106 0 21 hm5C_associated_SNPs_130312 0 0 1 0 1 HAUS5 chr19:36113778 3'AG 36113778 Downstream 32bp
chr14 24109065 24109065 1 + A C rs116189534 24109065 + 24109045 24109085 41 GCAGGGGTCAACCCTCTGGTAGGGAGCACTCTGGGGACCAG GCAGGGGTCAACCCTCTGGTCGGGAGCACTCTGGGGACCAG Direct Gain 0 0.967060657076821 0 0.829508662223816 prediction 0.934121314153643 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24109065 chr14:24109065 synonymous SNV . 0 21 hm5C_associated_SNPs_130315 0 0 1 0 2 DHRS2 chr14:24109003 3'AG 24109003 Downstream 63bp
chr14 24109065 24109065 1 + A C rs116189534 24109065 + 24109045 24109085 41 GCAGGGGTCAACCCTCTGGTAGGGAGCACTCTGGGGACCAG GCAGGGGTCAACCCTCTGGTCGGGAGCACTCTGGGGACCAG Direct Gain 0 0.967060657076821 0 0.829508662223816 prediction 0.934121314153643 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24109065 chr14:24109065 synonymous SNV . 0 21 hm5C_associated_SNPs_130315 0 0 1 0 2 DHRS2 chr14:24109104 5'GT 24109104 Upstream 40bp
chr15 59347914 59347914 1 + T C rs138658453 59347914 + 59347894 59347934 41 CTTGGACACTCCAGATCTCATTGGAGCCAGGGTTCCAGTTC CTTGGACACTCCAGATCTCACTGGAGCCAGGGTTCCAGTTC Direct Gain 0 0.966606611472917 0 0.832375228404999 prediction 0.933213222945834 Functional Gain - RNF111 ENSG00000157450 CDS Human protein_coding chr15:59347914 chr15:59347914 synonymous SNV . 0 21 hm5C_associated_SNPs_130325 0 0 1 0 1 RNF111 chr15:59347881 3'AG 59347881 Downstream 34bp
chr6 24403411 24403411 1 + T C rs146260219 24403411 + 24403391 24403431 41 CGGCCGCCGAGCCAACCTGATTGGAAGGAGCCGAGCGGCGC CGGCCGCCGAGCCAACCTGACTGGAAGGAGCCGAGCGGCGC Direct Gain 0 0.966597997979899 0 0.349615931510925 prediction 0.933195995959799 Functional Gain - MRS2 ENSG00000124532 CDS Human protein_coding chr6:24403411 chr6:24403411 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_130326 0 0 1 0 1 MRS2 chr6:24403464 5'GT 24403464 Upstream 54bp
chr11 43702530 43702530 1 + A C rs56168061 43702530 + 43702510 43702550 41 GTCGGCCCGGGGCTCGGAGAATGGGCAGGTGAGTCGGATGC GTCGGCCCGGGGCTCGGAGACTGGGCAGGTGAGTCGGATGC Direct Gain 0 0.965628950038006 0 0.516914486885071 prediction 0.931257900076012 Functional Gain - HSD17B12 ENSG00000149084 CDS Human protein_coding chr11:43702530 chr11:43702530 nonsynonymous SNV 0.994 1 21 hm5C_associated_SNPs_130365 0 0 1 1 1 HSD17B12 chr11:43702537 5'GT 43702537 Upstream 8bp
chr6 159316291 159316291 1 + G C rs183794014 159316291 + 159316271 159316311 41 AAGAACGAGGAACACTGCCCGGGGAGTTTCTTCCTCTGCAA AAGAACGAGGAACACTGCCCCGGGAGTTTCTTCCTCTGCAA Direct Gain 0 0.965423484896507 0 0.900339841842651 prediction 0.930846969793014 Functional Gain - C6orf99 ENSG00000203711 CDS Human lincRNA chr6:159316291 chr6:159316291 synonymous SNV . 0 21 hm5C_associated_SNPs_130376 0 0 0 0 1 C6orf99 chr6:159316253 3'AG 159316253 Downstream 39bp
chr19 55086249 55086249 1 + T C rs45523736 55086249 + 55086229 55086269 41 GCCCAGCCCTGTGGTGACCTTAGGAGGGAACGTGACCCTCC GCCCAGCCCTGTGGTGACCTCAGGAGGGAACGTGACCCTCC Direct Gain 0 0.96527767756868 0 0.918740630149841 prediction 0.93055535513736 Functional Gain - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55086249 chr19:55086249 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_130380 0 0 0 0 1 LILRA2 chr19:55086198 3'AG 55086198 Downstream 52bp
chrX 118377149 118377149 1 + G C rs202113314 118377149 + 118377129 118377169 41 TGGGCAAACTGCTGAAGGAGGGGGAGGAGCCCACTGTGTAC TGGGCAAACTGCTGAAGGAGCGGGAGGAGCCCACTGTGTAC Direct Gain 0 0.965166414486239 0 0.858601212501526 prediction 0.930332828972478 Functional Gain - PGRMC1 ENSG00000101856 CDS Human protein_coding chrX:118377149 chrX:118377149 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_130385 0 0 1 0 1 PGRMC1 chrX:118377114 3'AG 118377114 Downstream 36bp
chr6 42984935 42984935 1 + T C UCEC 42984935 + 42984915 42984955 41 ACCAGTGGCCCAGGGGATGTTACGGTGGACAGTGCACCTGG ACCAGTGGCCCAGGGGATGTCACGGTGGACAGTGCACCTGG Direct Gain 0 0.965036742339864 0 0.794003367424011 prediction 0.930073484679729 Functional Gain - KLHDC3 ENSG00000124702 CDS Human protein_coding chr6:42984935 chr6:42984935 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_130388 0 0 1 0 1 KLHDC3 chr6:42984872 3'AG 42984872 Downstream 64bp
chr5 140048717 140048717 1 + T C UCEC 140048717 + 140048697 140048737 41 GGTACCATCTACCTCTTCAATTGGAATGGCTTTGGGGCCAC GGTACCATCTACCTCTTCAACTGGAATGGCTTTGGGGCCAC Direct Gain 0 0.964972379158092 0 0.840711116790771 prediction 0.929944758316184 Functional Gain - WDR55 ENSG00000120314 CDS Human protein_coding chr5:140048717 chr5:140048717 synonymous SNV . 0 21 hm5C_associated_SNPs_130391 0 0 1 0 1 WDR55 chr5:140048664 3'AG 140048664 Downstream 54bp
chr16 58550386 58550386 1 + G C CESC 58550386 + 58550366 58550406 41 GTGGGTGTCCCTGCAGGCCAGAGGAGGAGCGCCGGTGCCTG GTGGGTGTCCCTGCAGGCCACAGGAGGAGCGCCGGTGCCTG Direct Gain 0 0.964830922861574 0 0.87308669090271 prediction 0.929661845723148 Functional Gain - SETD6 ENSG00000103037 CDS Human protein_coding chr16:58550386 chr16:58550386 nonsynonymous SNV 0.994 1 21 hm5C_associated_SNPs_130398 0 0 1 0 1 SETD6 chr16:58550382 3'AG 58550382 Downstream 5bp
chr10 18289671 18289671 1 + T C LUAD 18289671 + 18289651 18289691 41 TTTTGCAGATGGCCTAGCCATAGGAGCAGCCTTCTCATCAT TTTTGCAGATGGCCTAGCCACAGGAGCAGCCTTCTCATCAT Direct Gain 0 0.96475614628252 0 0.740209102630615 prediction 0.929512292565039 Functional Gain - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18289671 chr10:18289671 nonsynonymous SNV 0.959 3 21 hm5C_associated_SNPs_130403 0 0 0 0 2 SLC39A12 chr10:18289596 3'AG 18289596 Downstream 76bp
chr10 18289671 18289671 1 + T C LUAD 18289671 + 18289651 18289691 41 TTTTGCAGATGGCCTAGCCATAGGAGCAGCCTTCTCATCAT TTTTGCAGATGGCCTAGCCACAGGAGCAGCCTTCTCATCAT Direct Gain 0 0.96475614628252 0 0.740209102630615 prediction 0.929512292565039 Functional Gain - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18289671 chr10:18289671 nonsynonymous SNV 0.959 3 21 hm5C_associated_SNPs_130403 0 0 0 0 2 SLC39A12 chr10:18289754 5'GT 18289754 Upstream 84bp
chr10 96701769 96701769 1 + G C SKCM 96701769 + 96701749 96701789 41 ACTGGCTGAAAGAGCTAACAGAGGATTTGGTAGGTGTGCAT ACTGGCTGAAAGAGCTAACACAGGATTTGGTAGGTGTGCAT Direct Gain 0 0.964752022152724 0 0.63357400894165 prediction 0.929504044305448 Functional Gain - CYP2C9 ENSG00000138109 CDS Human protein_coding chr10:96701769 chr10:96701769 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_130404 0 0 0 0 1 CYP2C9 chr10:96701777 5'GT 96701777 Upstream 9bp
chr10 127408404 127408404 1 + G C HNSC 127408404 + 127408384 127408424 41 ATGCCAAGGAGGCCGGAGCCGAGGGTCCGCCGGCCGGGGCC ATGCCAAGGAGGCCGGAGCCCAGGGTCCGCCGGCCGGGGCC Direct Gain 0 0.964735464866142 0 0.879686653614044 prediction 0.929470929732285 Functional Gain - EDRF1 ENSG00000107938 CDS Human protein_coding chr10:127408404 chr10:127408404 nonsynonymous SNV 0.739 1 21 hm5C_associated_SNPs_130406 0 0 1 0 1 EDRF1 chr10:127408484 5'GT 127408484 Upstream 81bp
chr8 104388110 104388110 1 + G C BLCA 104388110 + 104388090 104388130 41 AATGTCTGAGGGAAAGCTTTGAGGAGTCCTGGACACCCAAC AATGTCTGAGGGAAAGCTTTCAGGAGTCCTGGACACCCAAC Direct Gain 0 0.964696408245544 0 0.962681472301483 prediction 0.929392816491088 Functional Gain - CTHRC1 ENSG00000164932 CDS Human protein_coding chr8:104388110 chr8:104388110 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_130409 0 0 0 0 1 CTHRC1 chr8:104388187 5'GT 104388187 Upstream 78bp
chr1 79120789 79120789 1 + T C LUSC 79120789 + 79120769 79120809 41 ATTCTGCTGCTGGGTCCAATTGGAGCTGGGAAGTCCAGCTT ATTCTGCTGCTGGGTCCAATCGGAGCTGGGAAGTCCAGCTT Direct Gain 0 0.964591913706947 0 0.8799968957901 prediction 0.929183827413894 Functional Gain - IFI44 ENSG00000137965 CDS Human protein_coding chr1:79120789 chr1:79120789 synonymous SNV . 0 21 hm5C_associated_SNPs_130413 0 0 0 0 1 IFI44 chr1:79120699 3'AG 79120699 Downstream 91bp
chr8 66605949 66605949 1 + T C SARC 66605949 + 66605929 66605969 41 AGTGGCGTCTTTTGCTGATGTTGGATGGGTAGCCAAAGAAG AGTGGCGTCTTTTGCTGATGCTGGATGGGTAGCCAAAGAAG Direct Gain 0 0.96458883424238 0 0.871254324913025 prediction 0.929177668484759 Functional Gain - MTFR1 ENSG00000066855 CDS Human protein_coding chr8:66605949 chr8:66605949 nonsynonymous SNV 0.981 3 21 hm5C_associated_SNPs_130415 0 0 1 0 2 MTFR1 chr8:66605879 3'AG 66605879 Downstream 71bp
chr8 66605949 66605949 1 + T C SARC 66605949 + 66605929 66605969 41 AGTGGCGTCTTTTGCTGATGTTGGATGGGTAGCCAAAGAAG AGTGGCGTCTTTTGCTGATGCTGGATGGGTAGCCAAAGAAG Direct Gain 0 0.96458883424238 0 0.871254324913025 prediction 0.929177668484759 Functional Gain - MTFR1 ENSG00000066855 CDS Human protein_coding chr8:66605949 chr8:66605949 nonsynonymous SNV 0.981 3 21 hm5C_associated_SNPs_130415 0 0 1 0 2 MTFR1 chr8:66605994 5'GT 66605994 Upstream 46bp
chr16 28841315 28841315 1 + G C BLCA 28841315 + 28841295 28841335 41 ACGACGATGGGCGCACTGAAGAGGAGAAGCACAGTGCAGTC ACGACGATGGGCGCACTGAACAGGAGAAGCACAGTGCAGTC Direct Gain 0 0.964443920439848 0 0.897078156471252 prediction 0.928887840879696 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28841315 chr16:28841315 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_130421 0 0 1 0 1 ATXN2L chr16:28841379 5'GT 28841379 Upstream 65bp
chr1 22964209 22964209 1 + G C UCEC 22964209 + 22964189 22964229 41 GAGCACCAGACGGGAAGAAAGGGGAGGCAGGAAGACCTGGC GAGCACCAGACGGGAAGAAACGGGAGGCAGGAAGACCTGGC Direct Gain 0 0.964414944567763 0 0.866998910903931 prediction 0.928829889135526 Functional Gain - C1QA ENSG00000173372 CDS Human protein_coding chr1:22964209 chr1:22964209 nonsynonymous SNV 0.004 4 21 hm5C_associated_SNPs_130422 0 0 0 0 1 C1QA chr1:22964272 5'GT 22964272 Upstream 64bp
chrX 53223699 53223699 1 + G C LUAD 53223699 + 53223679 53223719 41 GGATTGGGCCTCGGAGAGCTGAGGAGGCGAGGCACTGACAC GGATTGGGCCTCGGAGAGCTCAGGAGGCGAGGCACTGACAC Direct Gain 0 0.964237277093975 0 0.93819785118103 prediction 0.92847455418795 Functional Gain - KDM5C ENSG00000126012 CDS Human protein_coding chrX:53223699 chrX:53223699 synonymous SNV . 0 21 hm5C_associated_SNPs_130429 0 0 0 0 1 KDM5C chrX:53223676 3'AG 53223676 Downstream 24bp
chr12 85674234 85674234 1 + G C BLCA 85674234 + 85674214 85674254 41 GCCGAGCATCACGTGCGCTTGGAGAGGACCTCGCCCTGTCA GCCGAGCATCACGTGCGCTTCGAGAGGACCTCGCCCTGTCA Direct Gain 0 0.964142091750424 0 0.775822460651398 prediction 0.928284183500848 Functional Gain - ALX1 ENSG00000180318 CDS Human protein_coding chr12:85674234 chr12:85674234 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_130434 0 0 1 0 1 ALX1 chr12:85674265 5'GT 85674265 Upstream 32bp
chr1 21804653 21804653 1 + G C BLCA 21804653 + 21804633 21804673 41 TCAGGAATCTGCAGGAGTCTGAAGAGGAGGAAGCCCCCCAG TCAGGAATCTGCAGGAGTCTCAAGAGGAGGAAGCCCCCCAG Direct Gain 0 0.964130212569293 0 0.940788388252258 prediction 0.928260425138587 Functional Gain - NBPF3 ENSG00000142794 CDS Human protein_coding chr1:21804653 chr1:21804653 nonsynonymous SNV 0.005 2 21 hm5C_associated_SNPs_130436 0 0 0 0 3 NBPF3 chr1:21804562 3'AG 21804562 Downstream 92bp
chr1 21804653 21804653 1 + G C BLCA 21804653 + 21804633 21804673 41 TCAGGAATCTGCAGGAGTCTGAAGAGGAGGAAGCCCCCCAG TCAGGAATCTGCAGGAGTCTCAAGAGGAGGAAGCCCCCCAG Direct Gain 0 0.964130212569293 0 0.940788388252258 prediction 0.928260425138587 Functional Gain - NBPF3 ENSG00000142794 CDS Human protein_coding chr1:21804653 chr1:21804653 nonsynonymous SNV 0.005 2 21 hm5C_associated_SNPs_130436 0 0 0 0 3 NBPF3 chr1:21804637 3'AG 21804637 Downstream 17bp
chr1 21804653 21804653 1 + G C BLCA 21804653 + 21804633 21804673 41 TCAGGAATCTGCAGGAGTCTGAAGAGGAGGAAGCCCCCCAG TCAGGAATCTGCAGGAGTCTCAAGAGGAGGAAGCCCCCCAG Direct Gain 0 0.964130212569293 0 0.940788388252258 prediction 0.928260425138587 Functional Gain - NBPF3 ENSG00000142794 CDS Human protein_coding chr1:21804653 chr1:21804653 nonsynonymous SNV 0.005 2 21 hm5C_associated_SNPs_130436 0 0 0 0 3 NBPF3 chr1:21804689 5'GT 21804689 Upstream 37bp
chr9 37487901 37487901 1 + T C rs16934141 37487901 + 37487881 37487921 41 TCCTATGTGGGAAACAATTTTGGGACTGGAGCCCTCAAATG TCCTATGTGGGAAACAATTTCGGGACTGGAGCCCTCAAATG Direct Gain 0 0.964103272605996 0 0.864240527153015 prediction 0.928206545211991 Functional Gain - POLR1E ENSG00000137054 CDS Human protein_coding chr9:37487901 chr9:37487901 synonymous SNV . 0 21 hm5C_associated_SNPs_130440 0 0 1 0 2 POLR1E chr9:37487860 3'AG 37487860 Downstream 42bp
chr9 37487901 37487901 1 + T C rs16934141 37487901 + 37487881 37487921 41 TCCTATGTGGGAAACAATTTTGGGACTGGAGCCCTCAAATG TCCTATGTGGGAAACAATTTCGGGACTGGAGCCCTCAAATG Direct Gain 0 0.964103272605996 0 0.864240527153015 prediction 0.928206545211991 Functional Gain - POLR1E ENSG00000137054 CDS Human protein_coding chr9:37487901 chr9:37487901 synonymous SNV . 0 21 hm5C_associated_SNPs_130440 0 0 1 0 2 POLR1E chr9:37487936 5'GT 37487936 Upstream 36bp
chr12 104458418 104458418 1 + G C LUAD 104458418 + 104458398 104458438 41 CCGCGCCCGGCACGGACACCGAGCGGTGGCCATCCGGGAGC CCGCGCCCGGCACGGACACCCAGCGGTGGCCATCCGGGAGC Direct Gain 0 0.964066268738788 0 0.765998005867004 prediction 0.928132537477577 Functional Gain - HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104458418 chr12:104458418 nonsynonymous SNV 0.994 2 21 hm5C_associated_SNPs_130442 0 0 1 0 1 HCFC2 chr12:104458501 5'GT 104458501 Upstream 84bp
chr16 14165217 14165217 1 + G C rs568565225 14165217 + 14165197 14165237 41 GAGCGGCGGCGGCGGCGGCCGGGGAGGTGAGCGGCGGGCGG GAGCGGCGGCGGCGGCGGCCCGGGAGGTGAGCGGCGGGCGG Direct Gain 0 0.96398029439937 0 0.893436193466187 prediction 0.927960588798741 Functional Gain - MKL2 ENSG00000186260 UTR5 Human protein_coding chr16:14165217 chr16:14165217 . . 0 21 hm5C_associated_SNPs_130448 0 0 1 0 1 MKL2 chr16:14165222 5'GT 14165222 Upstream 6bp
chr19 50926910 50926910 1 + G C LUSC 50926910 + 50926890 50926930 41 ACCCCAGCCCTGTGCTATCAGAGGAGGAAGACTTACCGTTG ACCCCAGCCCTGTGCTATCACAGGAGGAAGACTTACCGTTG Direct Gain 0 0.963845431665169 0 0.921756386756897 prediction 0.927690863330337 Functional Gain - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50926910 chr19:50926910 nonsynonymous SNV 0.866 3 21 hm5C_associated_SNPs_130454 0 0 0 0 2 SPIB chr19:50926862 3'AG 50926862 Downstream 49bp
chr19 50926910 50926910 1 + G C LUSC 50926910 + 50926890 50926930 41 ACCCCAGCCCTGTGCTATCAGAGGAGGAAGACTTACCGTTG ACCCCAGCCCTGTGCTATCACAGGAGGAAGACTTACCGTTG Direct Gain 0 0.963845431665169 0 0.921756386756897 prediction 0.927690863330337 Functional Gain - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50926910 chr19:50926910 nonsynonymous SNV 0.866 3 21 hm5C_associated_SNPs_130454 0 0 0 0 2 SPIB chr19:50926897 3'AG 50926897 Downstream 14bp
chr20 49354448 49354448 1 + G C BLCA 49354448 + 49354428 49354468 41 GATCAAAACCTGGAAAATTTGAGGAGTTTTATGGATTACTA GATCAAAACCTGGAAAATTTCAGGAGTTTTATGGATTACTA Direct Gain 0 0.963795707687795 0 0.777283310890198 prediction 0.92759141537559 Functional Gain - PARD6B ENSG00000124171 CDS Human protein_coding chr20:49354448 chr20:49354448 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_130459 0 0 1 0 1 PARD6B chr20:49354394 3'AG 49354394 Downstream 55bp
chr13 113817415 113817415 1 + G C CESC 113817415 + 113817395 113817435 41 GCACCTGCTCCCCCGGCTATGAGGGCAGCAACTGCGAGCTG GCACCTGCTCCCCCGGCTATCAGGGCAGCAACTGCGAGCTG Direct Gain 0 0.963513768986522 0 0.8951136469841 prediction 0.927027537973044 Functional Gain - PROZ ENSG00000126231 CDS Human protein_coding chr13:113817415 chr13:113817415 nonsynonymous SNV 0.109 3 21 hm5C_associated_SNPs_130469 0 0 0 0 2 PROZ chr13:113817323 3'AG 113817323 Downstream 93bp
chr13 113817415 113817415 1 + G C CESC 113817415 + 113817395 113817435 41 GCACCTGCTCCCCCGGCTATGAGGGCAGCAACTGCGAGCTG GCACCTGCTCCCCCGGCTATCAGGGCAGCAACTGCGAGCTG Direct Gain 0 0.963513768986522 0 0.8951136469841 prediction 0.927027537973044 Functional Gain - PROZ ENSG00000126231 CDS Human protein_coding chr13:113817415 chr13:113817415 nonsynonymous SNV 0.109 3 21 hm5C_associated_SNPs_130469 0 0 0 0 2 PROZ chr13:113817436 5'GT 113817436 Upstream 22bp
chr2 69046427 69046427 1 + T C GBM 69046427 + 69046407 69046447 41 ACTGAAGACCTCCGAATTTCTAGGACAGACAGCTTCAGTAG ACTGAAGACCTCCGAATTTCCAGGACAGACAGCTTCAGTAG Direct Gain 0 0.96339638370288 0 0.818692803382874 prediction 0.92679276740576 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69046427 chr2:69046427 synonymous SNV . 0 21 hm5C_associated_SNPs_130473 0 0 0 0 1 ARHGAP25 chr2:69046451 5'GT 69046451 Upstream 25bp
chr4 77228056 77228056 1 + G C rs199535918 77228056 + 77228036 77228076 41 GGAGAAAGACGCCCCTCTTGGGGGAGCTGCGATTCCGGGAG GGAGAAAGACGCCCCTCTTGCGGGAGCTGCGATTCCGGGAG Direct Gain 0 0.963307924291001 0 0.967704057693481 prediction 0.926615848582002 Functional Gain - STBD1 ENSG00000118804 CDS Human protein_coding chr4:77228056 chr4:77228056 nonsynonymous SNV 0.597 0 21 hm5C_associated_SNPs_130477 0 0 0 0 1 STBD1 chr4:77228142 5'GT 77228142 Upstream 87bp
chr3 40552976 40552976 1 + G C BLCA 40552976 + 40552956 40552996 41 TTTAGGAACCAGTGACCTTTGAGGATGTGGCTGTGTACTTC TTTAGGAACCAGTGACCTTTCAGGATGTGGCTGTGTACTTC Direct Gain 0 0.96318325603393 0 0.680966436862946 prediction 0.92636651206786 Functional Gain - ZNF620 ENSG00000177842 CDS Human protein_coding chr3:40552976 chr3:40552976 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_130482 0 0 1 0 1 ZNF620 chr3:40552961 3'AG 40552961 Downstream 16bp
chr6 88362934 88362934 1 + G C BLCA 88362934 + 88362914 88362954 41 GCAGCACAGCTAAGAGAATAGAGGAGTTCCTGGCCCAGTTT GCAGCACAGCTAAGAGAATACAGGAGTTCCTGGCCCAGTTT Direct Gain 0 0.963129956045428 0 0.684310913085938 prediction 0.926259912090856 Functional Gain - ORC3 ENSG00000135336 CDS Human protein_coding chr6:88362934 chr6:88362934 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_130486 0 0 1 1 1 ORC3 chr6:88362967 5'GT 88362967 Upstream 34bp
chr20 47836040 47836040 1 + G C LUSC 47836040 + 47836020 47836060 41 GCGAGGATGACGAGGTGCCGGTGGAGCCCGAGTCTGACTCC GCGAGGATGACGAGGTGCCGCTGGAGCCCGAGTCTGACTCC Direct Gain 0 0.963122200879597 0 0.865191400051117 prediction 0.926244401759193 Functional Gain - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47836040 chr20:47836040 nonsynonymous SNV 0.363 1 21 hm5C_associated_SNPs_130487 0 0 1 0 1 DDX27 chr20:47836078 5'GT 47836078 Upstream 39bp
chr20 32664886 32664886 1 + T C STAD 32664886 + 32664866 32664906 41 GGCGGCGGCGGCGGTGGTGGTGGCAGCGGTGGCGGTGGCAG GGCGGCGGCGGCGGTGGTGGCGGCAGCGGTGGCGGTGGCAG Direct Gain 0 0.963045741917001 0 0.960159420967102 prediction 0.926091483834002 Functional Gain - RALY ENSG00000125970 CDS Human protein_coding chr20:32664886 chr20:32664886 synonymous SNV . 0 21 hm5C_associated_SNPs_130490 0 0 1 0 1 RALY chr20:32664834 3'AG 32664834 Downstream 53bp
chr9 916871 916871 1 + G C LUSC 916871 + 916851 916891 41 TGCCCCAGTTCTTCACTTTTGAGGATGCTCCCTCTTACCCG TGCCCCAGTTCTTCACTTTTCAGGATGCTCCCTCTTACCCG Direct Gain 0 0.96301649607644 0 0.945400595664978 prediction 0.926032992152881 Functional Gain - DMRT1 ENSG00000137090 CDS Human protein_coding chr9:916871 chr9:916871 nonsynonymous SNV 0.781 2 21 hm5C_associated_SNPs_130494 0 0 0 0 1 DMRT1 chr9:916907 5'GT 916907 Upstream 37bp
chr1 209949007 209949007 1 + G C CESC 209949007 + 209948987 209949027 41 GCCAGTATGAGGCTCTGAAGGAGGACTGGAGGACCCTTGGG GCCAGTATGAGGCTCTGAAGCAGGACTGGAGGACCCTTGGG Direct Gain 0 0.962955363569712 0 0.772612690925598 prediction 0.925910727139424 Functional Gain - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209949007 chr1:209949007 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_130495 0 0 0 0 2 TRAF3IP3 chr1:209948944 3'AG 209948944 Downstream 64bp
chr1 209949007 209949007 1 + G C CESC 209949007 + 209948987 209949027 41 GCCAGTATGAGGCTCTGAAGGAGGACTGGAGGACCCTTGGG GCCAGTATGAGGCTCTGAAGCAGGACTGGAGGACCCTTGGG Direct Gain 0 0.962955363569712 0 0.772612690925598 prediction 0.925910727139424 Functional Gain - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209949007 chr1:209949007 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_130495 0 0 0 0 2 TRAF3IP3 chr1:209949081 5'GT 209949081 Upstream 75bp
chr6 26158710 26158710 1 + G C LUAD 26158710 + 26158690 26158730 41 CCGTGCGCCTGCTGCTTCCGGGGGAGCTGGCCAAGCACGCC CCGTGCGCCTGCTGCTTCCGCGGGAGCTGGCCAAGCACGCC Direct Gain 0 0.962624055857237 0 0.930046081542969 prediction 0.925248111714474 Functional Gain - HIST1H2BD ENSG00000158373 CDS Human protein_coding chr6:26158710 chr6:26158710 nonsynonymous SNV 0.163 2 21 hm5C_associated_SNPs_130509 0 0 1 0 1 HIST1H2BD chr6:26158787 5'GT 26158787 Upstream 78bp
chr17 40172232 40172232 1 + T C rs28372786 40172232 + 40172212 40172252 41 GGCCCCGGGAGGTACGGACCTGGGAGGCGAGGCTCGTCCGG GGCCCCGGGAGGTACGGACCCGGGAGGCGAGGCTCGTCCGG Direct Gain 0 0.962517038366086 0 0.9365074634552 prediction 0.925034076732173 Functional Gain - NKIRAS2 ENSG00000168256 UTR5 Human protein_coding chr17:40172232 chr17:40172232 . . 0 21 hm5C_associated_SNPs_130511 0 0 1 0 1 NKIRAS2 chr17:40172287 5'GT 40172287 Upstream 56bp
chr10 38404188 38404188 1 + G C rs117193245 38404188 + 38404168 38404208 41 GCGAGGAGCCATGGATATTAGAGGAAAAATTTCCAAGCCAG GCGAGGAGCCATGGATATTACAGGAAAAATTTCCAAGCCAG Direct Gain 0 0.962496010084856 0 0.865256667137146 prediction 0.924992020169713 Functional Gain - ZNF37A ENSG00000075407 CDS Human protein_coding chr10:38404188 chr10:38404188 nonsynonymous SNV 0.908 1 21 hm5C_associated_SNPs_130514 0 0 1 0 1 ZNF37A chr10:38404218 5'GT 38404218 Upstream 31bp
chr14 77935506 77935506 1 + G C LUAD 77935506 + 77935486 77935526 41 GTCGAGGCATCCCTGCTCCTGAGGAAGAGCGGACGCGACAG GTCGAGGCATCCCTGCTCCTCAGGAAGAGCGGACGCGACAG Direct Gain 0 0.962482691301745 0 0.904945731163025 prediction 0.924965382603489 Functional Gain - AHSA1 ENSG00000100591 CDS Human protein_coding chr14:77935506 chr14:77935506 nonsynonymous SNV 0.993 1 21 hm5C_associated_SNPs_130516 0 0 1 0 1 AHSA1 chr14:77935420 3'AG 77935420 Downstream 87bp
chr9 124074734 124074734 1 + G C rs369788495 124074734 + 124074714 124074754 41 GGGCCCGAGTGCACGTGTCTGAGGAGGGCACTGAGCCCGAG GGGCCCGAGTGCACGTGTCTCAGGAGGGCACTGAGCCCGAG Direct Gain 0 0.962349303169492 0 0.945734858512878 prediction 0.924698606338984 Functional Gain - GSN ENSG00000148180 CDS Human protein_coding chr9:124074734 chr9:124074734 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_130522 0 0 1 0 1 GSN chr9:124074766 5'GT 124074766 Upstream 33bp
chr19 5914728 5914728 1 + G C HNSC 5914728 + 5914708 5914748 41 GCAGCGGGACGCTGGATCTGGAGGAGTTCCTTCGGGCGCTG GCAGCGGGACGCTGGATCTGCAGGAGTTCCTTCGGGCGCTG Direct Gain 0 0.96228321484909 0 0.933673143386841 prediction 0.924566429698179 Functional Gain - CAPS ENSG00000105519 CDS Human protein_coding chr19:5914728 chr19:5914728 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_130526 0 0 0 0 1 CAPS chr19:5914751 5'GT 5914751 Upstream 24bp
chr6 139355328 139355328 1 + G C LUAD 139355328 + 139355308 139355348 41 ATCACGAGGTTAACCTCTTAGTGGAGGAAATTCATCGTTTG ATCACGAGGTTAACCTCTTACTGGAGGAAATTCATCGTTTG Direct Gain 0 0.962087026198272 0 0.901332378387451 prediction 0.924174052396544 Functional Gain - ABRACL ENSG00000146386 CDS Human protein_coding chr6:139355328 chr6:139355328 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_130534 0 0 1 0 3 ABRACL chr6:139355292 3'AG 139355292 Downstream 37bp
chr6 139355328 139355328 1 + G C LUAD 139355328 + 139355308 139355348 41 ATCACGAGGTTAACCTCTTAGTGGAGGAAATTCATCGTTTG ATCACGAGGTTAACCTCTTACTGGAGGAAATTCATCGTTTG Direct Gain 0 0.962087026198272 0 0.901332378387451 prediction 0.924174052396544 Functional Gain - ABRACL ENSG00000146386 CDS Human protein_coding chr6:139355328 chr6:139355328 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_130534 0 0 1 0 3 ABRACL chr6:139355296 3'AG 139355296 Downstream 33bp
chr6 139355328 139355328 1 + G C LUAD 139355328 + 139355308 139355348 41 ATCACGAGGTTAACCTCTTAGTGGAGGAAATTCATCGTTTG ATCACGAGGTTAACCTCTTACTGGAGGAAATTCATCGTTTG Direct Gain 0 0.962087026198272 0 0.901332378387451 prediction 0.924174052396544 Functional Gain - ABRACL ENSG00000146386 CDS Human protein_coding chr6:139355328 chr6:139355328 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_130534 0 0 1 0 3 ABRACL chr6:139355358 5'GT 139355358 Upstream 31bp
chr22 41612201 41612201 1 + T C UCEC 41612201 + 41612181 41612221 41 GGCTGCCTGGTCTGCCAAAATTGGAGCCTTCCTCCACTCTC GGCTGCCTGGTCTGCCAAAACTGGAGCCTTCCTCCACTCTC Direct Gain 0 0.962064263585367 0 0.614293694496155 prediction 0.924128527170734 Functional Gain - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41612201 chr22:41612201 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_130537 0 0 1 0 2 L3MBTL2 chr22:41612143 3'AG 41612143 Downstream 59bp
chr22 41612201 41612201 1 + T C UCEC 41612201 + 41612181 41612221 41 GGCTGCCTGGTCTGCCAAAATTGGAGCCTTCCTCCACTCTC GGCTGCCTGGTCTGCCAAAACTGGAGCCTTCCTCCACTCTC Direct Gain 0 0.962064263585367 0 0.614293694496155 prediction 0.924128527170734 Functional Gain - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41612201 chr22:41612201 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_130537 0 0 1 0 2 L3MBTL2 chr22:41612266 5'GT 41612266 Upstream 66bp
chr20 55012466 55012466 1 + G C HNSC 55012466 + 55012446 55012486 41 AAGAAGCTCCTGCCAGCTCAGAGGAGACCTATCAGGTGCCC AAGAAGCTCCTGCCAGCTCACAGGAGACCTATCAGGTGCCC Direct Gain 0 0.961853518418299 0 0.927837371826172 prediction 0.923707036836598 Functional Gain - CASS4 ENSG00000087589 CDS Human protein_coding chr20:55012466 chr20:55012466 nonsynonymous SNV 0.075 0 21 hm5C_associated_SNPs_130542 0 0 0 0 1 CASS4 chr20:55012480 5'GT 55012480 Upstream 15bp
chr14 63671683 63671683 1 + G C HNSC 63671683 + 63671663 63671703 41 GTGGTGGGGGACGGTGCCGTGGGGAAAACCTGCCTGCTGAT GTGGTGGGGGACGGTGCCGTCGGGAAAACCTGCCTGCTGAT Direct Gain 0 0.961691864896732 0 0.978059411048889 prediction 0.923383729793464 Functional Gain - RHOJ ENSG00000126785 CDS Human protein_coding chr14:63671683 chr14:63671683 synonymous SNV . 0 21 hm5C_associated_SNPs_130549 0 0 0 0 1 RHOJ chr14:63671765 5'GT 63671765 Upstream 83bp
chr1 154956408 154956408 1 + G C BLCA 154956408 + 154956388 154956428 41 CGTGCTTGCGACCCCTATTTGGGGGTCTGGGTGGCTACTGG CGTGCTTGCGACCCCTATTTCGGGGTCTGGGTGGCTACTGG Direct Gain 0 0.961688085995316 0 0.955638408660889 prediction 0.923376171990631 Functional Gain - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154956408 chr1:154956408 nonsynonymous SNV 0.687 0 21 hm5C_associated_SNPs_130550 0 0 1 0 1 FLAD1 chr1:154956318 3'AG 154956318 Downstream 91bp
chr12 102036345 102036345 1 + G C BLCA 102036345 + 102036325 102036365 41 GACTCAAGCGCATGCGCAGAGAGGAGAAGAAGAGCGCAGGT GACTCAAGCGCATGCGCAGACAGGAGAAGAAGAGCGCAGGT Direct Gain 0 0.961629621227168 0 0.775073409080505 prediction 0.923259242454336 Functional Gain - MYBPC1 ENSG00000196091 CDS Human protein_coding chr12:102036345 chr12:102036345 nonsynonymous SNV 0.949 0 21 hm5C_associated_SNPs_130554 0 0 0 0 1 MYBPC1 chr12:102036363 5'GT 102036363 Upstream 19bp
chr7 158649366 158649366 1 + G C rs571952764 158649366 + 158649346 158649386 41 GGGGCACAGGTGGCCTCTTCGGGGTGGACCGCGCCTGGCCG GGGGCACAGGTGGCCTCTTCCGGGTGGACCGCGCCTGGCCG Direct Gain 0 0.961602762894195 0 0.969645977020264 prediction 0.92320552578839 Functional Gain - WDR60 ENSG00000126870 UTR5 Human protein_coding chr7:158649366 chr7:158649366 . . 0 21 hm5C_associated_SNPs_130557 0 0 1 0 1 WDR60 chr7:158649441 5'GT 158649441 Upstream 76bp
chr3 183777963 183777963 1 + A C LUSC 183777963 + 183777943 183777983 41 AAGGAGCCGGGGGAGTTAGCAGGGAAGAAGCTGGGACCCAG AAGGAGCCGGGGGAGTTAGCCGGGAAGAAGCTGGGACCCAG Direct Gain 0 0.961464858438577 0 0.957367658615112 prediction 0.922929716877153 Functional Gain - HTR3C ENSG00000178084 CDS Human protein_coding chr3:183777963 chr3:183777963 synonymous SNV . 0 21 hm5C_associated_SNPs_130566 0 0 0 0 1 HTR3C chr3:183777938 3'AG 183777938 Downstream 26bp
chr6 71998778 71998778 1 + T C rs112585190 71998778 + 71998758 71998798 41 GCGAGGGCCCGGGGCAGGAGTCCGAGCAGCCCGCGCAGCCC GCGAGGGCCCGGGGCAGGAGCCCGAGCAGCCCGCGCAGCCC Direct Gain 0 0.961455481673331 0 0.835113704204559 prediction 0.922910963346662 Functional Gain - OGFRL1 ENSG00000119900 CDS Human protein_coding chr6:71998778 chr6:71998778 nonsynonymous SNV 0.568 0 21 hm5C_associated_SNPs_130567 0 0 0 0 1 OGFRL1 chr6:71998873 5'GT 71998873 Upstream 96bp
chr19 16631001 16631001 1 + T C UCEC 16631001 + 16630981 16631021 41 CGTGACCGGCGTCTTCTTCCTGGGGAGTACGACTTGGACCG CGTGACCGGCGTCTTCTTCCCGGGGAGTACGACTTGGACCG Direct Gain 0 0.961339764812615 0 0.945703268051147 prediction 0.92267952962523 Functional Gain - CHERP ENSG00000085872 CDS Human protein_coding chr19:16631001 chr19:16631001 synonymous SNV . 0 21 hm5C_associated_SNPs_130575 0 0 0 0 1 C19orf44 chr19:16630905 3'AG 16630905 Downstream 97bp
chr18 624935 624935 1 + T C GBM 624935 + 624915 624955 41 AAGGCTATGCCGGGAGTCTTTGGCAGATTCCTGGGGTGAAT AAGGCTATGCCGGGAGTCTTCGGCAGATTCCTGGGGTGAAT Direct Gain 0 0.961242237680244 0 0.888649046421051 prediction 0.922484475360487 Functional Gain - CLUL1 ENSG00000079101 CDS Human protein_coding chr18:624935 chr18:624935 nonsynonymous SNV 0.984 0 21 hm5C_associated_SNPs_130578 0 0 0 0 2 CLUL1 chr18:624865 3'AG 624865 Downstream 71bp
chr18 624935 624935 1 + T C GBM 624935 + 624915 624955 41 AAGGCTATGCCGGGAGTCTTTGGCAGATTCCTGGGGTGAAT AAGGCTATGCCGGGAGTCTTCGGCAGATTCCTGGGGTGAAT Direct Gain 0 0.961242237680244 0 0.888649046421051 prediction 0.922484475360487 Functional Gain - CLUL1 ENSG00000079101 CDS Human protein_coding chr18:624935 chr18:624935 nonsynonymous SNV 0.984 0 21 hm5C_associated_SNPs_130578 0 0 0 0 2 CLUL1 chr18:625032 5'GT 625032 Upstream 98bp
chr19 52954507 52954507 1 + T C rs324104 52954507 + 52954487 52954527 41 TGGCGCGCGTCCGGAGGTGCTGAGGAGCCAACCGGCCCAAA TGGCGCGCGTCCGGAGGTGCCGAGGAGCCAACCGGCCCAAA Direct Gain 0 0.961183374705093 0 0.956287622451782 prediction 0.922366749410186 Functional Gain - ZNF534 ENSG00000198633 CDS Human protein_coding chr19:52954507 chr19:52954507 synonymous SNV . 0 21 hm5C_associated_SNPs_130583 0 0 0 0 1 ZNF534 chr19:52954440 3'AG 52954440 Downstream 68bp
chr5 148695757 148695757 1 + G C LUSC 148695757 + 148695737 148695777 41 GCAGAACTGAAGGGCTCAATGAGCAGGGCTGCGGGCCGCAA GCAGAACTGAAGGGCTCAATCAGCAGGGCTGCGGGCCGCAA Direct Gain 0 0.961180980519398 0 0.943068385124207 prediction 0.922361961038796 Functional Gain - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148695757 chr5:148695757 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_130584 0 0 1 0 1 AFAP1L1 chr5:148695714 3'AG 148695714 Downstream 44bp
chr15 97326897 97326897 1 + T C STAD 97326897 + 97326877 97326917 41 GCATGAGGAATGGCCCCGGCTGGGATGTCAGGGGCCCAGGA GCATGAGGAATGGCCCCGGCCGGGATGTCAGGGGCCCAGGA Direct Gain 0 0.961170115229082 0 0.959846377372742 prediction 0.922340230458164 Functional Gain - SPATA8 ENSG00000185594 CDS Human protein_coding chr15:97326897 chr15:97326897 synonymous SNV . 0 21 hm5C_associated_SNPs_130586 0 0 0 0 1 SPATA8;SPATA8 chr15:97326974 5'GT 97326974 Upstream 78bp
chr7 154875961 154875961 1 + G C LUAD 154875961 + 154875941 154875981 41 ACACGTGGCGGGAGCAGAAGGAGCAGCGGGCCGCCCTCATG ACACGTGGCGGGAGCAGAAGCAGCAGCGGGCCGCCCTCATG Direct Gain 0 0.961065203694088 0 0.80155622959137 prediction 0.922130407388175 Functional Gain - HTR5A ENSG00000157219 CDS Human protein_coding chr7:154875961 chr7:154875961 nonsynonymous SNV 0.838 1 21 hm5C_associated_SNPs_130588 0 0 0 0 1 HTR5A chr7:154875865 3'AG 154875865 Downstream 97bp
chr1 20964564 20964564 1 + A C STAD 20964564 + 20964544 20964584 41 TGCACCAGGAGAAGGGCAGGAGCGAGCTCCGGGGGCCCCTG TGCACCAGGAGAAGGGCAGGCGCGAGCTCCGGGGGCCCCTG Direct Gain 0 0.960927648885962 0 0.893933176994324 prediction 0.921855297771923 Functional Gain - PINK1 ENSG00000158828 CDS Human protein_coding chr1:20964564 chr1:20964564 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130599 0 0 0 0 1 PINK1 chr1:20964622 5'GT 20964622 Upstream 59bp
chr14 21545011 21545011 1 + A C UCEC 21545011 + 21544991 21545031 41 AGTGGGAGTTAGGAGGTCACAGGGACCCCTCTCCCAGTCAC AGTGGGAGTTAGGAGGTCACCGGGACCCCTCTCCCAGTCAC Direct Gain 0 0.960901371274866 0 0.847092986106873 prediction 0.921802742549732 Functional Gain - ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21545011 chr14:21545011 synonymous SNV . 0 21 hm5C_associated_SNPs_130601 0 0 1 0 1 ARHGEF40 chr14:21545049 5'GT 21545049 Upstream 39bp
chr4 100208036 100208036 1 - A G SKCM 100208036 - 100208016 100208056 41 AGCCGGCATCGTGGAGAGTGTTGGAGAAGGGGTGACTACAG AGCCGGCATCGTGGAGAGTGCTGGAGAAGGGGTGACTACAG Direct Gain 0 0.960898602086017 0 0.809379577636719 prediction 0.921797204172033 Functional Gain - ADH1A ENSG00000187758 CDS Human protein_coding chr4:100208036 chr4:100208036 nonsynonymous SNV 0.656 1 21 hm5C_associated_SNPs_130602 0 0 0 0 1 ADH1A chr4:100208007 5'GT 100208007 Upstream 30bp
chr7 102112954 102112954 1 + T C rs539175596 102112954 + 102112934 102112974 41 TGTGGAGCTGGAGGCAGACGTGGGGGGGCCGGGGCAGCCAG TGTGGAGCTGGAGGCAGACGCGGGGGGGCCGGGGCAGCCAG Direct Gain 0 0.960762526423199 0 0.979784965515137 prediction 0.921525052846397 Functional Gain - LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102112954 chr7:102112954 nonsynonymous SNV 0.102 2 21 hm5C_associated_SNPs_130610 0 0 1 0 1 LRWD1 chr7:102112901 3'AG 102112901 Downstream 54bp
chr15 64388288 64388288 1 + G C CESC 64388288 + 64388268 64388308 41 CCGGCCTGGAGCCGGAGTCCGAGGGGGCGGCCGGGGGATCA CCGGCCTGGAGCCGGAGTCCCAGGGGGCGGCCGGGGGATCA Direct Gain 0 0.960697505427199 0 0.867080271244049 prediction 0.921395010854398 Functional Gain - SNX1 ENSG00000028528 CDS Human protein_coding chr15:64388288 chr15:64388288 nonsynonymous SNV 0.999 0 21 hm5C_associated_SNPs_130612 0 0 1 0 1 SNX1 chr15:64388371 5'GT 64388371 Upstream 84bp
chr22 32754222 32754222 1 + G C UCEC 32754222 + 32754202 32754242 41 AAAACCAATGTCCCTGGAGTGTGGATGCACCGTCTGCCTCA AAAACCAATGTCCCTGGAGTCTGGATGCACCGTCTGCCTCA Direct Gain 0 0.960560683763984 0 0.900627970695496 prediction 0.921121367527968 Functional Gain - RFPL3 ENSG00000128276 CDS Human protein_coding chr22:32754222 chr22:32754222 nonsynonymous SNV 0.187 3 21 hm5C_associated_SNPs_130622 0 0 0 0 1 RFPL3 chr22:32754141 3'AG 32754141 Downstream 82bp
chr15 59417063 59417063 1 + T C rs28383563 59417063 + 59417043 59417083 41 AGACCTTGCCTCCCCACTGATAGGAAGGTCCTAGGCTGCCG AGACCTTGCCTCCCCACTGACAGGAAGGTCCTAGGCTGCCG Direct Gain 0 0.960521431942573 0 0.912050783634186 prediction 0.921042863885145 Functional Gain - CCNB2 ENSG00000157456 CDS Human protein_coding chr15:59417063 chr15:59417063 nonsynonymous SNV 0.023 0 21 hm5C_associated_SNPs_130625 0 0 1 0 1 CCNB2 chr15:59416966 3'AG 59416966 Downstream 98bp
chr12 123238315 123238315 1 + T C SKCM 123238315 + 123238295 123238335 41 ACCCAAGGAACAGTGCCAAGTTAGATGCCGATTACCCACTT ACCCAAGGAACAGTGCCAAGCTAGATGCCGATTACCCACTT Direct Gain 0 0.960332348260762 0 0.775860488414764 prediction 0.920664696521524 Functional Gain - DENR ENSG00000139726 CDS Human protein_coding chr12:123238315 chr12:123238315 synonymous SNV . 0 21 hm5C_associated_SNPs_130635 0 0 1 0 1 DENR chr12:123238240 3'AG 123238240 Downstream 76bp
chr6 56911508 56911508 1 + T C rs529181557 56911508 + 56911488 56911528 41 AGTGGTGGCGGCTGCGGCAGTAGGGACAGCAGGAGCAGTGG AGTGGTGGCGGCTGCGGCAGCAGGGACAGCAGGAGCAGTGG Direct Gain 0 0.960148886306064 0 0.866107106208801 prediction 0.920297772612128 Functional Gain - KIAA1586 ENSG00000168116 UTR5 Human protein_coding chr6:56911508 chr6:56911508 . . 0 21 hm5C_associated_SNPs_130642 0 0 1 0 1 KIAA1586 chr6:56911574 5'GT 56911574 Upstream 67bp
chr5 122152657 122152657 1 + G C BLCA 122152657 + 122152637 122152677 41 CTGAGTGGAGCAGGAATATTGAGGATGGTGAACAAGGCTGC CTGAGTGGAGCAGGAATATTCAGGATGGTGAACAAGGCTGC Direct Gain 0 0.960133779717921 0 0.916055560112 prediction 0.920267559435841 Functional Gain - SNX2 ENSG00000205302 CDS Human protein_coding chr5:122152657 chr5:122152657 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_130643 0 0 1 0 2 SNX2 chr5:122152610 3'AG 122152610 Downstream 48bp
chr5 122152657 122152657 1 + G C BLCA 122152657 + 122152637 122152677 41 CTGAGTGGAGCAGGAATATTGAGGATGGTGAACAAGGCTGC CTGAGTGGAGCAGGAATATTCAGGATGGTGAACAAGGCTGC Direct Gain 0 0.960133779717921 0 0.916055560112 prediction 0.920267559435841 Functional Gain - SNX2 ENSG00000205302 CDS Human protein_coding chr5:122152657 chr5:122152657 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_130643 0 0 1 0 2 SNX2 chr5:122152723 5'GT 122152723 Upstream 67bp
chr1 15541847 15541847 1 + G C CESC 15541847 + 15541827 15541867 41 TGCCTGAGTATCAGGGATAAGAGGAAGCAGCGGCAGGGCGA TGCCTGAGTATCAGGGATAACAGGAAGCAGCGGCAGGGCGA Direct Gain 0 0.960064417866369 0 0.791775107383728 prediction 0.920128835732737 Functional Gain - TMEM51 ENSG00000171729 CDS Human protein_coding chr1:15541847 chr1:15541847 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_130649 0 0 0 0 1 TMEM51 chr1:15541927 5'GT 15541927 Upstream 81bp
chr19 52729309 52729309 1 + T C rs369880957 52729309 + 52729289 52729329 41 GTCCCTCTTTGGGGAGACACTGGGGGGCCTTTGGCTGTCAC GTCCCTCTTTGGGGAGACACCGGGGGGCCTTTGGCTGTCAC Direct Gain 0 0.960041729956501 0 0.972474455833435 prediction 0.920083459913001 Functional Gain - PPP2R1A ENSG00000268015 ncRNA_intronic Human protein_coding chr19:52729309 chr19:52729309 . . 0 21 hm5C_associated_SNPs_130652 0 0 1 1 1 PPP2R1A chr19:52729218 3'AG 52729218 Downstream 92bp
chr17 66364804 66364804 1 + T C rs1558878 66364804 + 66364784 66364824 41 GCCTGTATGGTGCAGGGCTCTGGGAGATGGACAGTCTGGTG GCCTGTATGGTGCAGGGCTCCGGGAGATGGACAGTCTGGTG Direct Gain 0 0.959989207733752 0 0.866368651390076 prediction 0.919978415467504 Functional Gain - ARSG ENSG00000141337 CDS Human protein_coding chr17:66364804 chr17:66364804 nonsynonymous SNV 0.006 1 21 hm5C_associated_SNPs_130654 0 1 0 0 1 ARSG chr17:66364885 5'GT 66364885 Upstream 82bp
chr19 44337696 44337696 1 + T C rs190134631 44337696 + 44337676 44337716 41 CCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGCAA CCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCACTGCAA Direct Gain 0 0.95981163755017 0 0.853366792201996 prediction 0.919623275100339 Functional Gain - ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337696 chr19:44337696 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_130664 0 0 0 0 2 ZNF283 chr19:44337657 3'AG 44337657 Downstream 40bp
chr19 44337696 44337696 1 + T C rs190134631 44337696 + 44337676 44337716 41 CCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGCAA CCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCACTGCAA Direct Gain 0 0.95981163755017 0 0.853366792201996 prediction 0.919623275100339 Functional Gain - ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337696 chr19:44337696 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_130664 0 0 0 0 2 ZNF283 chr19:44337778 5'GT 44337778 Upstream 83bp
chr15 44829435 44829435 1 + G C BLCA 44829435 + 44829415 44829455 41 CGGGGGACTCGGACTCCTGGGGTGAGGAGAAGTTGCTGGGG CGGGGGACTCGGACTCCTGGCGTGAGGAGAAGTTGCTGGGG Direct Gain 0 0.959644001661675 0 0.789503812789917 prediction 0.919288003323349 Functional Gain - EIF3J ENSG00000104131 CDS Human protein_coding chr15:44829435 chr15:44829435 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_130669 0 0 1 0 1 EIF3J chr15:44829435 5'GT 44829435 Upstream 1bp
chr13 29252193 29252193 1 + T C UCEC 29252193 + 29252173 29252213 41 TCCATCACAAAGCGAAGTCATGGGAGAGCCACACTTGATGG TCCATCACAAAGCGAAGTCACGGGAGAGCCACACTTGATGG Direct Gain 0 0.959637601034662 0 0.91568922996521 prediction 0.919275202069323 Functional Gain - POMP ENSG00000132963 CDS Human protein_coding chr13:29252193 chr13:29252193 nonsynonymous SNV 0.992 2 21 hm5C_associated_SNPs_130671 0 0 1 0 1 POMP chr13:29252172 3'AG 29252172 Downstream 22bp
chr6 47775964 47775964 1 + T C rs150360785 47775964 + 47775944 47775984 41 GTGTCTGTGTGGTCAGCTTTTGGAAGGCCAGACTCCATTCC GTGTCTGTGTGGTCAGCTTTCGGAAGGCCAGACTCCATTCC Direct Gain 0 0.959636454323491 0 0.958657741546631 prediction 0.919272908646981 Functional Gain - OPN5 ENSG00000124818 CDS Human protein_coding chr6:47775964 chr6:47775964 synonymous SNV . 0 21 hm5C_associated_SNPs_130672 0 0 0 0 1 OPN5 chr6:47775890 3'AG 47775890 Downstream 75bp
chr18 19203799 19203799 1 + G C BLCA 19203799 + 19203779 19203819 41 GCTGGAAACGCTGAGTATTCGAGGAAATAACATTCGGTATT GCTGGAAACGCTGAGTATTCCAGGAAATAACATTCGGTATT Direct Gain 0 0.959626468949268 0 0.807859480381012 prediction 0.919252937898537 Functional Gain - SNRPD1 ENSG00000167088 CDS Human protein_coding chr18:19203799 chr18:19203799 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_130674 0 0 1 0 1 SNRPD1 chr18:19203709 3'AG 19203709 Downstream 91bp
chr6 3264488 3264488 1 + G C LIHC 3264488 + 3264468 3264508 41 CTGTGAGTGTGGCGTAGAGTGGGGATTAAGCAAAGGTCATG CTGTGAGTGTGGCGTAGAGTCGGGATTAAGCAAAGGTCATG Direct Gain 0 0.95958530597921 0 0.892439186573029 prediction 0.91917061195842 Functional Gain - PSMG4 ENSG00000180822 CDS Human protein_coding chr6:3264488 chr6:3264488 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130679 0 0 1 0 2 PSMG4 chr6:3264443 3'AG 3264443 Downstream 46bp
chr6 3264488 3264488 1 + G C LIHC 3264488 + 3264468 3264508 41 CTGTGAGTGTGGCGTAGAGTGGGGATTAAGCAAAGGTCATG CTGTGAGTGTGGCGTAGAGTCGGGATTAAGCAAAGGTCATG Direct Gain 0 0.95958530597921 0 0.892439186573029 prediction 0.91917061195842 Functional Gain - PSMG4 ENSG00000180822 CDS Human protein_coding chr6:3264488 chr6:3264488 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130679 0 0 1 0 2 PSMG4 chr6:3264559 5'GT 3264559 Upstream 72bp
chr15 41657737 41657737 1 + G C BLCA 41657737 + 41657717 41657757 41 AGTCAGAGTACCTTGGGTCTGAAGGGGTCACTCAAGCGCTC AGTCAGAGTACCTTGGGTCTCAAGGGGTCACTCAAGCGCTC Direct Gain 0 0.959511067146366 0 0.861107051372528 prediction 0.919022134292731 Functional Gain - NUSAP1 ENSG00000137804 CDS Human protein_coding chr15:41657737 chr15:41657737 synonymous SNV . 0 21 hm5C_associated_SNPs_130683 0 0 1 0 1 NUSAP1 chr15:41657787 5'GT 41657787 Upstream 51bp
chr12 16052915 16052915 1 + G C CESC 16052915 + 16052895 16052935 41 AACTCTATGCCAGTGGTTCAGAAGATGGAACATTGAGACTA AACTCTATGCCAGTGGTTCACAAGATGGAACATTGAGACTA Direct Gain 0 0.959380509818359 0 0.648860096931458 prediction 0.918761019636718 Functional Gain - STRAP ENSG00000023734 CDS Human protein_coding chr12:16052915 chr12:16052915 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_130689 0 0 1 0 2 STRAP chr12:16052838 3'AG 16052838 Downstream 78bp
chr12 16052915 16052915 1 + G C CESC 16052915 + 16052895 16052935 41 AACTCTATGCCAGTGGTTCAGAAGATGGAACATTGAGACTA AACTCTATGCCAGTGGTTCACAAGATGGAACATTGAGACTA Direct Gain 0 0.959380509818359 0 0.648860096931458 prediction 0.918761019636718 Functional Gain - STRAP ENSG00000023734 CDS Human protein_coding chr12:16052915 chr12:16052915 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_130689 0 0 1 0 2 STRAP chr12:16052987 5'GT 16052987 Upstream 73bp
chr7 156433679 156433679 1 + T C rs74678591 156433679 + 156433659 156433699 41 CGTAGCGGCGCGCAGCCTCCTTGGGGGACTCGGGGTCCTGG CGTAGCGGCGCGCAGCCTCCCTGGGGGACTCGGGGTCCTGG Direct Gain 0 0.959200358932963 0 0.525938272476196 prediction 0.918400717865926 Functional Gain - RNF32 ENSG00000105982 UTR5 Human protein_coding chr7:156433679 chr7:156433679 . . 0 21 hm5C_associated_SNPs_130697 0 0 0 0 1 RNF32 chr7:156433698 5'GT 156433698 Upstream 20bp
chr12 69753776 69753776 1 + T C UCEC 69753776 + 69753756 69753796 41 TTCAAGAGAATGGCCGAATTTGGGCCTGACTCCGGCGGGAG TTCAAGAGAATGGCCGAATTCGGGCCTGACTCCGGCGGGAG Direct Gain 0 0.959170177662529 0 0.811235010623932 prediction 0.918340355325057 Functional Gain - YEATS4 ENSG00000127337 CDS Human protein_coding chr12:69753776 chr12:69753776 synonymous SNV . 0 21 hm5C_associated_SNPs_130698 0 0 1 0 1 YEATS4 chr12:69753803 5'GT 69753803 Upstream 28bp
chr19 54466619 54466619 1 + G C CESC 54466619 + 54466599 54466639 41 GCGGGGGCGGCGGCGCCTCGGAGAAGAAGGACCCCGGCGGC GCGGGGGCGGCGGCGCCTCGCAGAAGAAGGACCCCGGCGGC Direct Gain 0 0.959147647829769 0 0.948067545890808 prediction 0.918295295659538 Functional Gain - CACNG8 ENSG00000142408 CDS Human protein_coding chr19:54466619 chr19:54466619 nonsynonymous SNV 0.618 0 21 hm5C_associated_SNPs_130699 0 0 0 0 1 CACNG8 chr19:54466679 5'GT 54466679 Upstream 61bp
chr7 87258202 87258202 1 + G C HNSC 87258202 + 87258182 87258222 41 GGTGGCGGCGGAGGCGGCAAGAAAAGCCTGAGCGCCCGCAA GGTGGCGGCGGAGGCGGCAACAAAAGCCTGAGCGCCCGCAA Direct Gain 0 0.959139867919662 0 0.904924750328064 prediction 0.918279735839323 Functional Gain - RUNDC3B ENSG00000105784 CDS Human protein_coding chr7:87258202 chr7:87258202 nonsynonymous SNV 0.969 1 21 hm5C_associated_SNPs_130700 0 0 0 0 1 RUNDC3B chr7:87258261 5'GT 87258261 Upstream 60bp
chr15 45050939 45050939 1 + G C BLCA 45050939 + 45050919 45050959 41 AAGAGGGGAAAGCCTTGAATGAGGAGATGGAGTTGAATCTG AAGAGGGGAAAGCCTTGAATCAGGAGATGGAGTTGAATCTG Direct Gain 0 0.959007395448496 0 0.939601302146912 prediction 0.918014790896993 Functional Gain - TRIM69 ENSG00000185880 CDS Human protein_coding chr15:45050939 chr15:45050939 nonsynonymous SNV 0.995 0 21 hm5C_associated_SNPs_130707 0 0 0 0 1 TRIM69 chr15:45051001 5'GT 45051001 Upstream 63bp
chr1 146747884 146747884 1 + T C BLCA 146747884 + 146747864 146747904 41 AGAAGGAGGCCATTTTACTCTGGGAGCCCAGAAACCCGCTG AGAAGGAGGCCATTTTACTCCGGGAGCCCAGAAACCCGCTG Direct Gain 0 0.958801443364547 0 0.927015542984009 prediction 0.917602886729093 Functional Gain - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146747884 chr1:146747884 nonsynonymous SNV 0.988 0 21 hm5C_associated_SNPs_130714 0 0 1 0 1 CHD1L chr1:146747921 5'GT 146747921 Upstream 38bp
chr10 44104075 44104075 1 + T C UCEC 44104075 + 44104055 44104095 41 TTTGCAGGGACCGCTGACATTTGGGGATGTGGCTGTGGCCT TTTGCAGGGACCGCTGACATCTGGGGATGTGGCTGTGGCCT Direct Gain 0 0.958773619444566 0 0.853493094444275 prediction 0.917547238889133 Functional Gain - ZNF485 ENSG00000198298 CDS Human protein_coding chr10:44104075 chr10:44104075 nonsynonymous SNV 0.995 3 21 hm5C_associated_SNPs_130716 0 0 0 0 1 ZNF485 chr10:44104062 3'AG 44104062 Downstream 14bp
chr2 234858761 234858761 1 + G C BRCA 234858761 + 234858741 234858781 41 GCACGGTGTCCCGGCTGCCTGAGGAGGAGACTGAGAGTTGG GCACGGTGTCCCGGCTGCCTCAGGAGGAGACTGAGAGTTGG Direct Gain 0 0.958583234946971 0 0.840068459510803 prediction 0.917166469893942 Functional Gain - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234858761 chr2:234858761 nonsynonymous SNV 0.957 3 21 hm5C_associated_SNPs_130727 0 0 0 0 1 TRPM8 chr2:234858790 5'GT 234858790 Upstream 30bp
chr19 7076407 7076407 1 + G C LUSC 7076407 + 7076387 7076427 41 TTTAGGGCTTGGTGACCTTTGAGGATGTGGCCGTGGAGTTC TTTAGGGCTTGGTGACCTTTCAGGATGTGGCCGTGGAGTTC Direct Gain 0 0.958570570788188 0 0.869819521903992 prediction 0.917141141576375 Functional Gain - ZNF557 ENSG00000130544 CDS Human protein_coding chr19:7076407 chr19:7076407 nonsynonymous SNV 0.743 0 21 hm5C_associated_SNPs_130729 0 0 1 0 1 ZNF557 chr19:7076392 3'AG 7076392 Downstream 16bp
chr6 74072918 74072918 1 + T C LAML 74072918 + 74072898 74072938 41 GAGGCTGAGATCTTGGTATTTGGGAGGCCTTCTTACCAGGA GAGGCTGAGATCTTGGTATTCGGGAGGCCTTCTTACCAGGA Direct Gain 0 0.958539356473375 0 0.951452136039734 prediction 0.917078712946751 Functional Gain - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74072918 chr6:74072918 synonymous SNV . 0 21 hm5C_associated_SNPs_130731 0 0 0 0 1 KHDC3L chr6:74072997 5'GT 74072997 Upstream 80bp
chr8 97307470 97307470 1 + T C STAD 97307470 + 97307450 97307490 41 GCTGGACAATCAGTATTACCTGGGAGCTGACTGAGGTAAGA GCTGGACAATCAGTATTACCCGGGAGCTGACTGAGGTAAGA Direct Gain 0 0.958483540326173 0 0.803829312324524 prediction 0.916967080652346 Functional Gain - PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97307470 chr8:97307470 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_130737 0 0 1 0 1 PTDSS1 chr8:97307484 5'GT 97307484 Upstream 15bp
chr7 102715814 102715814 1 + G C STAD 102715814 + 102715794 102715834 41 CAGGCTGACCCGGGGTCGGCGGCGGGGCGACCGCGAGCTCG CAGGCTGACCCGGGGTCGGCCGCGGGGCGACCGCGAGCTCG Direct Gain 0 0.958261046386965 0 0.861247420310974 prediction 0.91652209277393 Functional Gain - ARMC10 ENSG00000170632 CDS Human protein_coding chr7:102715814 chr7:102715814 nonsynonymous SNV 0.194 2 21 hm5C_associated_SNPs_130750 0 0 0 0 1 ARMC10 chr7:102715858 5'GT 102715858 Upstream 45bp
chrX 146993720 146993720 1 + T C COAD 146993720 + 146993700 146993740 41 GGAGGAGCTGGTGGTGGAAGTGCGGGGCTCCAATGGCGCTT GGAGGAGCTGGTGGTGGAAGCGCGGGGCTCCAATGGCGCTT Direct Gain 0 0.958156003948633 0 0.934695363044739 prediction 0.916312007897265 Functional Gain - FMR1 ENSG00000102081 CDS Human protein_coding chrX:146993720 chrX:146993720 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_130760 0 0 1 0 1 FMR1 chrX:146993748 5'GT 146993748 Upstream 29bp
chr2 191231453 191231453 1 + G C BLCA 191231453 + 191231433 191231473 41 CCTTGAGGTTGTGTTCAACAGAGGAGGAAACAGCAGAGCTT CCTTGAGGTTGTGTTCAACACAGGAGGAAACAGCAGAGCTT Direct Gain 0 0.957894585097891 0 0.714413523674011 prediction 0.915789170195781 Functional Gain - INPP1 ENSG00000151689 CDS Human protein_coding chr2:191231453 chr2:191231453 nonsynonymous SNV 0.932 1 21 hm5C_associated_SNPs_130773 0 0 1 0 1 INPP1 chr2:191231421 3'AG 191231421 Downstream 33bp
chr2 74128448 74128448 1 + G C CESC 74128448 + 74128428 74128468 41 CCACACACACCATGTGTGAAGAGGAGACCACCGCGCTCGTG CCACACACACCATGTGTGAACAGGAGACCACCGCGCTCGTG Direct Gain 0 0.957549984264673 0 0.706351399421692 prediction 0.915099968529346 Functional Gain - ACTG2 ENSG00000163017 CDS Human protein_coding chr2:74128448 chr2:74128448 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_130789 0 0 0 0 1 ACTG2 chr2:74128403 3'AG 74128403 Downstream 46bp
chr1 15813836 15813836 1 + T C rs61742388 15813836 + 15813816 15813856 41 GACGGCCGGTGGGAGGTGCATGGCATCGGCAGCCTCACGTC GACGGCCGGTGGGAGGTGCACGGCATCGGCAGCCTCACGTC Direct Gain 0 0.957528912855544 0 0.684167385101318 prediction 0.915057825711088 Functional Gain - CELA2B ENSG00000215704 CDS Human protein_coding chr1:15813836 chr1:15813836 synonymous SNV . 0 21 hm5C_associated_SNPs_130793 0 0 0 0 2 CELA2B chr1:15813780 3'AG 15813780 Downstream 57bp
chr1 15813836 15813836 1 + T C rs61742388 15813836 + 15813816 15813856 41 GACGGCCGGTGGGAGGTGCATGGCATCGGCAGCCTCACGTC GACGGCCGGTGGGAGGTGCACGGCATCGGCAGCCTCACGTC Direct Gain 0 0.957528912855544 0 0.684167385101318 prediction 0.915057825711088 Functional Gain - CELA2B ENSG00000215704 CDS Human protein_coding chr1:15813836 chr1:15813836 synonymous SNV . 0 21 hm5C_associated_SNPs_130793 0 0 0 0 2 CELA2B chr1:15813932 5'GT 15813932 Upstream 97bp
chr10 27793366 27793366 1 + G C LIHC 27793366 + 27793346 27793386 41 GAGTGGGGTGGGCAAGTCCAGGTGAGGCGGAGGTGCGGGTC GAGTGGGGTGGGCAAGTCCACGTGAGGCGGAGGTGCGGGTC Direct Gain 0 0.957466049290801 0 0.557161808013916 prediction 0.914932098581603 Functional Gain - RAB18 ENSG00000099246 CDS Human protein_coding chr10:27793366 chr10:27793366 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_130798 0 0 1 0 1 RAB18 chr10:27793366 5'GT 27793366 Upstream 1bp
chr8 55371663 55371663 1 + T C HNSC 55371663 + 55371643 55371683 41 GGCGGAGAAGCGGCCCTTCGTGGAGGAGGCAGAGCGGCTGC GGCGGAGAAGCGGCCCTTCGCGGAGGAGGCAGAGCGGCTGC Direct Gain 0 0.957228177523327 0 0.900762617588043 prediction 0.914456355046655 Functional Gain - SOX17 ENSG00000164736 CDS Human protein_coding chr8:55371663 chr8:55371663 nonsynonymous SNV 0.954 5 21 hm5C_associated_SNPs_130814 0 0 0 0 1 SOX17 chr8:55371618 3'AG 55371618 Downstream 46bp
chr8 101252680 101252680 1 + T C rs6511 101252680 + 101252660 101252700 41 ACCTGCAGGGGAGGTCTCCATGGGATGCCTTGCTTCTGAGA ACCTGCAGGGGAGGTCTCCACGGGATGCCTTGCTTCTGAGA Direct Gain 0 0.957196821104117 0 0.935727596282959 prediction 0.914393642208235 Functional Gain - SPAG1 ENSG00000104450 CDS Human protein_coding chr8:101252680 chr8:101252680 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130817 1 0 0 0 1 SPAG1 chr8:101252631 3'AG 101252631 Downstream 50bp
chr16 88804765 88804765 1 + T C rs114403731 88804765 + 88804745 88804785 41 GCTGAAGCCCCGAGTGCTGATGGGAAAGTGGCAGGCCCACC GCTGAAGCCCCGAGTGCTGACGGGAAAGTGGCAGGCCCACC Direct Gain 0 0.957031936373563 0 0.908210873603821 prediction 0.914063872747125 Functional Gain - PIEZO1 ENSG00000103335 CDS Human protein_coding chr16:88804765 chr16:88804765 nonsynonymous SNV 0.879 0 21 hm5C_associated_SNPs_130826 0 0 0 0 1 PIEZO1 chr16:88804813 5'GT 88804813 Upstream 49bp
chr22 39498038 39498038 1 + G C rs139302 39498038 + 39498018 39498058 41 GCCATAAAGCGACGGCTTGAGAGGATAAAGGTGAGGCACTG GCCATAAAGCGACGGCTTGACAGGATAAAGGTGAGGCACTG Direct Gain 0 0.957013199955962 0 0.86371123790741 prediction 0.914026399911923 Functional Gain - APOBEC3H ENSG00000100298 CDS Human protein_coding chr22:39498038 chr22:39498038 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130827 0 0 0 0 1 APOBEC3H chr22:39498047 5'GT 39498047 Upstream 10bp
chr2 108917374 108917374 1 + T C LUSC 108917374 + 108917354 108917394 41 AGCTGCTGCCACCGTCTTTCTGGGAAAACAACTGCAAGGTA AGCTGCTGCCACCGTCTTTCCGGGAAAACAACTGCAAGGTA Direct Gain 0 0.957004448319482 0 0.863787949085236 prediction 0.914008896638963 Functional Gain - SULT1C2 ENSG00000198203 CDS Human protein_coding chr2:108917374 chr2:108917374 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_130828 0 0 1 0 3 SULT1C2 chr2:108917294 3'AG 108917294 Downstream 81bp
chr2 108917374 108917374 1 + T C LUSC 108917374 + 108917354 108917394 41 AGCTGCTGCCACCGTCTTTCTGGGAAAACAACTGCAAGGTA AGCTGCTGCCACCGTCTTTCCGGGAAAACAACTGCAAGGTA Direct Gain 0 0.957004448319482 0 0.863787949085236 prediction 0.914008896638963 Functional Gain - SULT1C2 ENSG00000198203 CDS Human protein_coding chr2:108917374 chr2:108917374 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_130828 0 0 1 0 3 SULT1C2 chr2:108917356 3'AG 108917356 Downstream 19bp
chr2 108917374 108917374 1 + T C LUSC 108917374 + 108917354 108917394 41 AGCTGCTGCCACCGTCTTTCTGGGAAAACAACTGCAAGGTA AGCTGCTGCCACCGTCTTTCCGGGAAAACAACTGCAAGGTA Direct Gain 0 0.957004448319482 0 0.863787949085236 prediction 0.914008896638963 Functional Gain - SULT1C2 ENSG00000198203 CDS Human protein_coding chr2:108917374 chr2:108917374 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_130828 0 0 1 0 3 SULT1C2 chr2:108917391 5'GT 108917391 Upstream 18bp
chr4 26426000 26426000 1 + A C STAD 26426000 + 26425980 26426020 41 AACAAAGGTGGCTCTGTTTAATCGACTACGATCCCAGACAG AACAAAGGTGGCTCTGTTTACTCGACTACGATCCCAGACAG Direct Gain 0 0.956890374562831 0 0.865353941917419 prediction 0.913780749125662 Functional Gain - RBPJ ENSG00000168214 CDS Human protein_coding chr4:26426000 chr4:26426000 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_130835 0 0 1 0 1 RBPJ chr4:26425964 3'AG 26425964 Downstream 37bp
chr1 70904459 70904459 1 + G C PCPG 70904459 + 70904439 70904479 41 TTCGACTTTCTGTGGGCTTAGAGGATGAGGAAGACCTACTG TTCGACTTTCTGTGGGCTTACAGGATGAGGAAGACCTACTG Direct Gain 0 0.9567530041667 0 0.751049399375916 prediction 0.913506008333399 Functional Gain - CTH ENSG00000116761 CDS Human protein_coding chr1:70904459 chr1:70904459 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_130842 0 0 1 0 2 CTH chr1:70904371 3'AG 70904371 Downstream 89bp
chr1 70904459 70904459 1 + G C PCPG 70904459 + 70904439 70904479 41 TTCGACTTTCTGTGGGCTTAGAGGATGAGGAAGACCTACTG TTCGACTTTCTGTGGGCTTACAGGATGAGGAAGACCTACTG Direct Gain 0 0.9567530041667 0 0.751049399375916 prediction 0.913506008333399 Functional Gain - CTH ENSG00000116761 CDS Human protein_coding chr1:70904459 chr1:70904459 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_130842 0 0 1 0 2 CTH chr1:70904509 5'GT 70904509 Upstream 51bp
chr11 125496665 125496665 1 + T C LUSC 125496665 + 125496645 125496685 41 CGAGGTGCTCGGTGGAGTCATGGCAGTGCCCTTTGTGGAAG CGAGGTGCTCGGTGGAGTCACGGCAGTGCCCTTTGTGGAAG Direct Gain 0 0.956668343603725 0 0.686904907226562 prediction 0.91333668720745 Functional Gain - CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125496665 chr11:125496665 nonsynonymous SNV 0.933 4 21 hm5C_associated_SNPs_130848 0 0 1 0 1 CHEK1 chr11:125496644 3'AG 125496644 Downstream 22bp
chr22 51178394 51178394 1 + T C KIRC 51178394 + 51178374 51178414 41 GGTGGCCGGCTGGGGATATATAGAAGAGAAAGGTGAGTATG GGTGGCCGGCTGGGGATATACAGAAGAGAAAGGTGAGTATG Direct Gain 0 0.956648503543566 0 0.777870118618011 prediction 0.913297007087132 Functional Gain - ACR ENSG00000100312 CDS Human protein_coding chr22:51178394 chr22:51178394 nonsynonymous SNV 0.988 0 21 hm5C_associated_SNPs_130851 0 0 0 0 1 ACR chr22:51178405 5'GT 51178405 Upstream 12bp
chr1 120050150 120050150 1 + G C BLCA 120050150 + 120050130 120050170 41 GCAGGAGGGTTTCTGGGACAGAGGATCATCCGCCTCTTGGT GCAGGAGGGTTTCTGGGACACAGGATCATCCGCCTCTTGGT Direct Gain 0 0.95657382337487 0 0.783252120018005 prediction 0.913147646749739 Functional Gain - HSD3B1 ENSG00000203857 CDS Human protein_coding chr1:120050150 chr1:120050150 nonsynonymous SNV 0.796 2 21 hm5C_associated_SNPs_130856 0 0 0 0 1 HSD3B1 chr1:120050244 5'GT 120050244 Upstream 95bp
chr18 10550121 10550121 1 + G C rs2305370 10550121 + 10550101 10550141 41 GTTCCAGGAGGGGGAATCAAGAAGAAATCACCTGCAACACC GTTCCAGGAGGGGGAATCAACAAGAAATCACCTGCAACACC Direct Gain 0 0.956507952994657 0 0.817528426647186 prediction 0.913015905989315 Functional Gain - NAPG ENSG00000134265 CDS Human protein_coding chr18:10550121 chr18:10550121 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_130860 0 0 1 0 1 NAPG chr18:10550074 3'AG 10550074 Downstream 48bp
chrX 12809712 12809712 1 + G C BLCA 12809712 + 12809692 12809732 41 GAGCTGGGCAAGGTGGTCACGAAGAAGTTCAGCAACCAGGA GAGCTGGGCAAGGTGGTCACCAAGAAGTTCAGCAACCAGGA Direct Gain 0 0.956458153435812 0 0.586598694324493 prediction 0.912916306871624 Functional Gain - PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12809712 chrX:12809712 synonymous SNV . 0 21 hm5C_associated_SNPs_130862 0 0 1 0 1 PRPS2 chrX:12809738 5'GT 12809738 Upstream 27bp
chr17 2207251 2207251 1 + G C rs370363297 2207251 + 2207231 2207271 41 GCGGGCGCTGCGCGTGCGCAGAGGTGCGGCCGGGGAGGCGC GCGGGCGCTGCGCGTGCGCACAGGTGCGGCCGGGGAGGCGC Direct Gain 0 0.956349317471474 0 0.810832500457764 prediction 0.912698634942948 Functional Gain - SRR ENSG00000167720 UTR5 Human protein_coding chr17:2207251 chr17:2207251 . . 0 21 hm5C_associated_SNPs_130868 0 0 0 0 1 SRR chr17:2207311 5'GT 2207311 Upstream 61bp
chr10 13629129 13629129 1 + G C UCEC 13629129 + 13629109 13629149 41 TCCTTCGGAAGCGGCAGCTGGTGGAGGACAGGAACCTGCTG TCCTTCGGAAGCGGCAGCTGCTGGAGGACAGGAACCTGCTG Direct Gain 0 0.95631381002392 0 0.825000643730164 prediction 0.912627620047839 Functional Gain - PRPF18 ENSG00000165630 CDS Human protein_coding chr10:13629129 chr10:13629129 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_130871 0 0 1 1 2 PRPF18 chr10:13629149 5'GT 13629149 Upstream 21bp
chr10 13629129 13629129 1 + G C UCEC 13629129 + 13629109 13629149 41 TCCTTCGGAAGCGGCAGCTGGTGGAGGACAGGAACCTGCTG TCCTTCGGAAGCGGCAGCTGCTGGAGGACAGGAACCTGCTG Direct Gain 0 0.95631381002392 0 0.825000643730164 prediction 0.912627620047839 Functional Gain - PRPF18 ENSG00000165630 CDS Human protein_coding chr10:13629129 chr10:13629129 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_130871 0 0 1 1 2 PRPF18 chr10:13629152 5'GT 13629152 Upstream 24bp
chr14 59105233 59105233 1 + G C SKCM 59105233 + 59105213 59105253 41 GCCTGGAGGAGAAGTTCTTGGAGGAGAACATCTTGCTGCTA GCCTGGAGGAGAAGTTCTTGCAGGAGAACATCTTGCTGCTA Direct Gain 0 0.956229481487436 0 0.89531135559082 prediction 0.912458962974873 Functional Gain - DACT1 ENSG00000165617 CDS Human protein_coding chr14:59105233 chr14:59105233 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_130878 0 0 0 0 1 DACT1 chr14:59105265 5'GT 59105265 Upstream 33bp
chr16 30939147 30939147 1 + G C CESC 30939147 + 30939127 30939167 41 GGAGCGGATGGAAGCTGACAGAGGAGCCACCGCTTCCACCG GGAGCGGATGGAAGCTGACACAGGAGCCACCGCTTCCACCG Direct Gain 0 0.956223006320065 0 0.92123156785965 prediction 0.912446012640129 Functional Gain - FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30939147 chr16:30939147 nonsynonymous SNV 0.977 0 21 hm5C_associated_SNPs_130879 0 0 0 0 1 FBXL19 chr16:30939066 3'AG 30939066 Downstream 82bp
chr20 4680497 4680497 1 + G C LUAD 4680497 + 4680477 4680517 41 AGATGATGGAGCGCGTGGTTGAGCAGATGTGTATCACCCAG AGATGATGGAGCGCGTGGTTCAGCAGATGTGTATCACCCAG Direct Gain 0 0.956137901516318 0 0.719736933708191 prediction 0.912275803032635 Functional Gain - PRNP ENSG00000171867 CDS Human protein_coding chr20:4680497 chr20:4680497 nonsynonymous SNV 0.986 4 21 hm5C_associated_SNPs_130886 1 0 1 0 1 PRNP chr20:4680516 5'GT 4680516 Upstream 20bp
chr7 79764527 79764527 1 + G C SKCM 79764527 + 79764507 79764547 41 GCGGCGGTGGAGCGGAGTAAGATGATCGACCGCAACCTCCG GCGGCGGTGGAGCGGAGTAACATGATCGACCGCAACCTCCG Direct Gain 0 0.956051587610466 0 0.387688875198364 prediction 0.912103175220932 Functional Gain - GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79764527 chr7:79764527 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_130894 0 0 1 0 1 GNAI1 chr7:79764594 5'GT 79764594 Upstream 68bp
chr3 185300589 185300589 1 + T C rs17289918 185300589 + 185300569 185300609 41 AGGACAGCGAAGGCACCAACTGGCAGACAAGTCCCAGGTGG AGGACAGCGAAGGCACCAACCGGCAGACAAGTCCCAGGTGG Direct Gain 0 0.956051517650518 0 0.937732815742493 prediction 0.912103035301036 Functional Gain - LIPH;SENP2 ENSG00000163904 CDS Human protein_coding chr3:185300589 chr3:185300589 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_130895 0 0 0 0 1 LIPH;SENP2 chr3:185300605 5'GT 185300605 Upstream 17bp
chr2 54014459 54014459 1 + A C CESC 54014459 + 54014439 54014479 41 GCCGAGCCCTTCCTCAACTCAGCGATGACATCCCTTTCCGA GCCGAGCCCTTCCTCAACTCCGCGATGACATCCCTTTCCGA Direct Gain 0 0.956009120126797 0 0.851125121116638 prediction 0.912018240253594 Functional Gain - ERLEC1 ENSG00000068912 CDS Human protein_coding chr2:54014459 chr2:54014459 nonsynonymous SNV 0.955 2 21 hm5C_associated_SNPs_130899 0 0 1 0 1 ERLEC1 chr2:54014509 5'GT 54014509 Upstream 51bp
chr19 44495749 44495749 1 + T C COAD 44495749 + 44495729 44495769 41 GGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTGCCC GGTCTTCACTGAGGAGGAGCCGGGGCTGCTGGACCCTGCCC Direct Gain 0 0.955996489805685 0 0.935419678688049 prediction 0.911992979611369 Functional Gain - ZNF155 ENSG00000204920 CDS Human protein_coding chr19:44495749 chr19:44495749 nonsynonymous SNV 0.033 3 21 hm5C_associated_SNPs_130900 0 0 0 0 2 ZNF155 chr19:44495700 3'AG 44495700 Downstream 50bp
chr19 44495749 44495749 1 + T C COAD 44495749 + 44495729 44495769 41 GGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTGCCC GGTCTTCACTGAGGAGGAGCCGGGGCTGCTGGACCCTGCCC Direct Gain 0 0.955996489805685 0 0.935419678688049 prediction 0.911992979611369 Functional Gain - ZNF155 ENSG00000204920 CDS Human protein_coding chr19:44495749 chr19:44495749 nonsynonymous SNV 0.033 3 21 hm5C_associated_SNPs_130900 0 0 0 0 2 ZNF155 chr19:44495826 5'GT 44495826 Upstream 78bp
chr17 29249092 29249092 1 + A C rs575831425 29249092 + 29249072 29249112 41 CTGCTGCGGGCGCCGGACACAGGCAACGCGCACTGCGCCGA CTGCTGCGGGCGCCGGACACCGGCAACGCGCACTGCGCCGA Direct Gain 0 0.95597351638867 0 0.852393805980682 prediction 0.911947032777341 Functional Gain - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29249092 chr17:29249092 synonymous SNV . 0 21 hm5C_associated_SNPs_130901 0 0 0 0 1 ADAP2 chr17:29249126 5'GT 29249126 Upstream 35bp
chr1 207286412 207286412 1 + A C BLCA 207286412 + 207286392 207286432 41 TCTGGGGCTCTTCATAGAAAAAGGAAAATGGCAGCCTGGCC TCTGGGGCTCTTCATAGAAACAGGAAAATGGCAGCCTGGCC Direct Gain 0 0.955946350709969 0 0.775037288665771 prediction 0.911892701419939 Functional Gain - C4BPA ENSG00000123838 CDS Human protein_coding chr1:207286412 chr1:207286412 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_130905 0 0 0 0 1 C4BPA chr1:207286346 3'AG 207286346 Downstream 67bp
chr13 45915481 45915481 1 + A C rs12872310 45915481 + 45915461 45915501 41 GGTGAGCATCCGGGGACTTGAGGCGGAGACACAAGGCTCCG GGTGAGCATCCGGGGACTTGCGGCGGAGACACAAGGCTCCG Direct Gain 0 0.955867495488289 0 0.926740169525146 prediction 0.911734990976578 Functional Gain - TPT1-AS1 ENSG00000170919 ncRNA_exonic Human processed_transcript chr13:45915481 chr13:45915481 . . 0 21 hm5C_associated_SNPs_130913 0 0 0 0 1 TPT1-AS1 chr13:45915522 5'GT 45915522 Upstream 42bp
chr19 6833256 6833256 1 + G C LUSC 6833256 + 6833236 6833276 41 ACTTCCAGATGTTCTCCTTTGAGGAGACCACATCCTGCAAG ACTTCCAGATGTTCTCCTTTCAGGAGACCACATCCTGCAAG Direct Gain 0 0.955858463942821 0 0.934929549694061 prediction 0.911716927885643 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6833256 chr19:6833256 nonsynonymous SNV 0.994 2 21 hm5C_associated_SNPs_130915 0 0 0 0 2 VAV1 chr19:6833195 3'AG 6833195 Downstream 62bp
chr19 6833256 6833256 1 + G C LUSC 6833256 + 6833236 6833276 41 ACTTCCAGATGTTCTCCTTTGAGGAGACCACATCCTGCAAG ACTTCCAGATGTTCTCCTTTCAGGAGACCACATCCTGCAAG Direct Gain 0 0.955858463942821 0 0.934929549694061 prediction 0.911716927885643 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6833256 chr19:6833256 nonsynonymous SNV 0.994 2 21 hm5C_associated_SNPs_130915 0 0 0 0 2 VAV1 chr19:6833296 5'GT 6833296 Upstream 41bp
chr11 20409598 20409598 1 + T C UCEC 20409598 + 20409578 20409618 41 TGTGGAGAATGAGGAGGACCTGCCAGAACTGTCGGACAGCG TGTGGAGAATGAGGAGGACCCGCCAGAACTGTCGGACAGCG Direct Gain 0 0.955801563020124 0 0.494216501712799 prediction 0.911603126040249 Functional Gain - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20409598 chr11:20409598 nonsynonymous SNV 0.876 0 21 hm5C_associated_SNPs_130922 0 0 1 0 1 PRMT3 chr11:20409565 3'AG 20409565 Downstream 34bp
chr3 134204841 134204841 1 - C G rs2370576 134204841 - 134204821 134204861 41 ACACGTGATGCGGGGGAGGGGGGGGGGGCGTGGCAGGAGCA ACACGTGATGCGGGGGAGGGCGGGGGGGCGTGGCAGGAGCA Direct Gain 0 0.955623675215794 0 0.930010676383972 prediction 0.911247350431588 Functional Gain - ANAPC13;CEP63 ENSG00000129055;ENSG00000182923 UTR5 Human other chr3:134204841 chr3:134204841 . . 0 21 hm5C_associated_SNPs_130931 0 0 0 0 1 ANAPC13;CEP63 chr3:134204794 5'GT 134204794 Upstream 48bp
chr17 34431961 34431961 1 + T C rs1719146 34431961 + 34431941 34431981 41 GCCTGCTGCTTTTCTTACACTGCGAGGAAGCTTCCTCGCAA GCCTGCTGCTTTTCTTACACCGCGAGGAAGCTTCCTCGCAA Direct Gain 0 0.955611319959281 0 0.802628755569458 prediction 0.911222639918561 Functional Gain - CCL4 ENSG00000129277 CDS Human other chr17:34431961 chr17:34431961 synonymous SNV . 0 21 hm5C_associated_SNPs_130933 0 0 0 0 2 CCL4 chr17:34431921 3'AG 34431921 Downstream 41bp
chr17 34431961 34431961 1 + T C rs1719146 34431961 + 34431941 34431981 41 GCCTGCTGCTTTTCTTACACTGCGAGGAAGCTTCCTCGCAA GCCTGCTGCTTTTCTTACACCGCGAGGAAGCTTCCTCGCAA Direct Gain 0 0.955611319959281 0 0.802628755569458 prediction 0.911222639918561 Functional Gain - CCL4 ENSG00000129277 CDS Human other chr17:34431961 chr17:34431961 synonymous SNV . 0 21 hm5C_associated_SNPs_130933 0 0 0 0 2 CCL4 chr17:34432035 5'GT 34432035 Upstream 75bp
chr7 7646687 7646687 1 + A C rs4222 7646687 + 7646667 7646707 41 TGTATGCAGTTGGATACAACAGGGAATCTGGTACCTGCAGA TGTATGCAGTTGGATACAACCGGGAATCTGGTACCTGCAGA Direct Gain 0 0.955556543967482 0 0.862594604492188 prediction 0.911113087934964 Functional Gain - MIOS ENSG00000164654 CDS Human protein_coding chr7:7646687 chr7:7646687 synonymous SNV . 0 21 hm5C_associated_SNPs_130937 0 0 0 0 1 MIOS chr7:7646627 3'AG 7646627 Downstream 61bp
chrX 11133059 11133059 1 + A C COAD 11133059 + 11133039 11133079 41 AGTACGTGGAGTGTCCCATTAGGGGCACTGCGGCTGAGAAT AGTACGTGGAGTGTCCCATTCGGGGCACTGCGGCTGAGAAT Direct Gain 0 0.955177181072281 0 0.952654480934143 prediction 0.910354362144562 Functional Gain - HCCS ENSG00000004961 CDS Human protein_coding chrX:11133059 chrX:11133059 synonymous SNV . 0 21 hm5C_associated_SNPs_130950 0 0 1 0 1 HCCS chrX:11133106 5'GT 11133106 Upstream 48bp
chr13 113909065 113909065 1 + A C UCEC 113909065 + 113909045 113909085 41 GGTGCTCCTCATGTTCAACGAGGGAGATGGCTTCAGCTTTG GGTGCTCCTCATGTTCAACGCGGGAGATGGCTTCAGCTTTG Direct Gain 0 0.955045040334652 0 0.864585220813751 prediction 0.910090080669303 Functional Gain - CUL4A ENSG00000139842 CDS Human protein_coding chr13:113909065 chr13:113909065 nonsynonymous SNV 0.734 1 21 hm5C_associated_SNPs_130963 0 0 1 0 2 CUL4A chr13:113909007 3'AG 113909007 Downstream 59bp
chr13 113909065 113909065 1 + A C UCEC 113909065 + 113909045 113909085 41 GGTGCTCCTCATGTTCAACGAGGGAGATGGCTTCAGCTTTG GGTGCTCCTCATGTTCAACGCGGGAGATGGCTTCAGCTTTG Direct Gain 0 0.955045040334652 0 0.864585220813751 prediction 0.910090080669303 Functional Gain - CUL4A ENSG00000139842 CDS Human protein_coding chr13:113909065 chr13:113909065 nonsynonymous SNV 0.734 1 21 hm5C_associated_SNPs_130963 0 0 1 0 2 CUL4A chr13:113909112 5'GT 113909112 Upstream 48bp
chr21 43867218 43867218 1 + T C BLCA 43867218 + 43867198 43867238 41 AAAATAAAGAGGAAGGAAAATGGGAGTTGGTGAACCCACCG AAAATAAAGAGGAAGGAAAACGGGAGTTGGTGAACCCACCG Direct Gain 0 0.954899971349417 0 0.791056632995605 prediction 0.909799942698835 Functional Gain - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43867218 chr21:43867218 nonsynonymous SNV 0.963 4 21 hm5C_associated_SNPs_130972 0 0 0 1 1 UBASH3A chr21:43867167 3'AG 43867167 Downstream 52bp
chr17 18659415 18659415 1 + G C CESC 18659415 + 18659395 18659435 41 AAACGCAGCAGGTCCTGATAGAGGAGAGAAATGTTTTCTGT AAACGCAGCAGGTCCTGATACAGGAGAGAAATGTTTTCTGT Direct Gain 0 0.954870062830646 0 0.732241809368134 prediction 0.909740125661292 Functional Gain - FBXW10 ENSG00000171931 CDS Human protein_coding chr17:18659415 chr17:18659415 nonsynonymous SNV 0.963 2 21 hm5C_associated_SNPs_130973 0 0 0 0 2 FBXW10 chr17:18659358 3'AG 18659358 Downstream 58bp
chr17 18659415 18659415 1 + G C CESC 18659415 + 18659395 18659435 41 AAACGCAGCAGGTCCTGATAGAGGAGAGAAATGTTTTCTGT AAACGCAGCAGGTCCTGATACAGGAGAGAAATGTTTTCTGT Direct Gain 0 0.954870062830646 0 0.732241809368134 prediction 0.909740125661292 Functional Gain - FBXW10 ENSG00000171931 CDS Human protein_coding chr17:18659415 chr17:18659415 nonsynonymous SNV 0.963 2 21 hm5C_associated_SNPs_130973 0 0 0 0 2 FBXW10 chr17:18659467 5'GT 18659467 Upstream 53bp
chr19 37581993 37581993 1 + T C ESCA 37581993 + 37581973 37582013 41 ATTTGTATAGAGATGTGATGTTGGAGAACTATAGCAACTTG ATTTGTATAGAGATGTGATGCTGGAGAACTATAGCAACTTG Direct Gain 0 0.954859440218352 0 0.788946628570557 prediction 0.909718880436704 Functional Gain - ZNF420 ENSG00000197050 CDS Human protein_coding chr19:37581993 chr19:37581993 synonymous SNV . 0 21 hm5C_associated_SNPs_130974 0 0 1 0 2 ZNF420 chr19:37581897 3'AG 37581897 Downstream 97bp
chr19 37581993 37581993 1 + T C ESCA 37581993 + 37581973 37582013 41 ATTTGTATAGAGATGTGATGTTGGAGAACTATAGCAACTTG ATTTGTATAGAGATGTGATGCTGGAGAACTATAGCAACTTG Direct Gain 0 0.954859440218352 0 0.788946628570557 prediction 0.909718880436704 Functional Gain - ZNF420 ENSG00000197050 CDS Human protein_coding chr19:37581993 chr19:37581993 synonymous SNV . 0 21 hm5C_associated_SNPs_130974 0 0 1 0 2 ZNF420 chr19:37582023 5'GT 37582023 Upstream 31bp
chr5 7889311 7889311 1 + T C COAD 7889311 + 7889291 7889331 41 AGCCGATTATAGCCGCTTTGTACGAGATGCCTGTGCCTGCT AGCCGATTATAGCCGCTTTGCACGAGATGCCTGTGCCTGCT Direct Gain 0 0.954805384588971 0 0.667982280254364 prediction 0.909610769177942 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7889311 chr5:7889311 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_130984 0 0 1 1 1 MTRR chr5:7889388 5'GT 7889388 Upstream 78bp
chr11 125439423 125439423 1 + T C rs3017281 125439423 + 125439403 125439443 41 GCGCCCCGGCGGAGCTGGCCTGCGGTGGGCTAGGGGCAGGG GCGCCCCGGCGGAGCTGGCCCGCGGTGGGCTAGGGGCAGGG Direct Gain 0 0.954364788742498 0 0.796232461929321 prediction 0.908729577484996 Functional Gain - EI24 ENSG00000149547 UTR5 Human protein_coding chr11:125439423 chr11:125439423 . . 0 21 hm5C_associated_SNPs_131006 0 0 1 0 1 EI24 chr11:125439469 5'GT 125439469 Upstream 47bp
chr2 232576099 232576099 1 + T C SKCM 232576099 + 232576079 232576119 41 GTTGTGGAAGAGGCAGAAAATGGAAGAGACGCCCCTGCTAA GTTGTGGAAGAGGCAGAAAACGGAAGAGACGCCCCTGCTAA Direct Gain 0 0.954308180556298 0 0.927837014198303 prediction 0.908616361112595 Functional Gain - PTMA ENSG00000187514 CDS Human protein_coding chr2:232576099 chr2:232576099 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_131008 0 0 1 0 2 PTMA chr2:232576058 3'AG 232576058 Downstream 42bp
chr2 232576099 232576099 1 + T C SKCM 232576099 + 232576079 232576119 41 GTTGTGGAAGAGGCAGAAAATGGAAGAGACGCCCCTGCTAA GTTGTGGAAGAGGCAGAAAACGGAAGAGACGCCCCTGCTAA Direct Gain 0 0.954308180556298 0 0.927837014198303 prediction 0.908616361112595 Functional Gain - PTMA ENSG00000187514 CDS Human protein_coding chr2:232576099 chr2:232576099 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_131008 0 0 1 0 2 PTMA chr2:232576129 5'GT 232576129 Upstream 31bp
chr20 814504 814504 1 + T C rs138802520 814504 + 814484 814524 41 TGGGGCCTCCTGGGCGTCGTTGGGAGCGGCCACTACCGGCC TGGGGCCTCCTGGGCGTCGTCGGGAGCGGCCACTACCGGCC Direct Gain 0 0.954291701012632 0 0.981836915016174 prediction 0.908583402025265 Functional Gain - FAM110A ENSG00000125898 UTR5 Human protein_coding chr20:814504 chr20:814504 . . 0 21 hm5C_associated_SNPs_131009 0 0 1 0 1 FAM110A chr20:814594 5'GT 814594 Upstream 91bp
chr13 32332513 32332513 1 + T C LUSC 32332513 + 32332493 32332533 41 TGTGATGGCAAGGATGACTGTGGGAACGGGGCGGACGAAGA TGTGATGGCAAGGATGACTGCGGGAACGGGGCGGACGAAGA Direct Gain 0 0.954080274659048 0 0.962398290634155 prediction 0.908160549318095 Functional Gain - RXFP2 ENSG00000133105 CDS Human protein_coding chr13:32332513 chr13:32332513 synonymous SNV . 0 21 hm5C_associated_SNPs_131022 0 0 0 0 1 RXFP2 chr13:32332541 5'GT 32332541 Upstream 29bp
chr7 150772765 150772765 1 + T C UCEC 150772765 + 150772745 150772785 41 CTTTGGAATTTTCCTGTACATGGGAGTCACCTCCCTTAACG CTTTGGAATTTTCCTGTACACGGGAGTCACCTCCCTTAACG Direct Gain 0 0.954014918867132 0 0.73492294549942 prediction 0.908029837734263 Functional Gain - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150772765 chr7:150772765 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_131027 0 0 1 0 2 SLC4A2 chr7:150772693 3'AG 150772693 Downstream 73bp
chr7 150772765 150772765 1 + T C UCEC 150772765 + 150772745 150772785 41 CTTTGGAATTTTCCTGTACATGGGAGTCACCTCCCTTAACG CTTTGGAATTTTCCTGTACACGGGAGTCACCTCCCTTAACG Direct Gain 0 0.954014918867132 0 0.73492294549942 prediction 0.908029837734263 Functional Gain - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150772765 chr7:150772765 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_131027 0 0 1 0 2 SLC4A2 chr7:150772862 5'GT 150772862 Upstream 98bp
chr11 44135765 44135765 1 + G C BLCA 44135765 + 44135745 44135785 41 GCTGGTGGCGGCTTTTCTACGTGGACTTACCGGCAAGGCTA GCTGGTGGCGGCTTTTCTACCTGGACTTACCGGCAAGGCTA Direct Gain 0 0.953591772243218 0 0.724264442920685 prediction 0.907183544486435 Functional Gain - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44135765 chr11:44135765 synonymous SNV . 0 21 hm5C_associated_SNPs_131054 0 0 1 0 1 EXT2 chr11:44135735 3'AG 44135735 Downstream 31bp
chr20 4680302 4680302 1 + G C BLCA 4680302 + 4680282 4680322 41 TACATTTCGGCAGTGACTATGAGGACCGTTACTATCGTGAA TACATTTCGGCAGTGACTATCAGGACCGTTACTATCGTGAA Direct Gain 0 0.953587540901059 0 0.927941560745239 prediction 0.907175081802118 Functional Gain - PRNP ENSG00000171867 CDS Human protein_coding chr20:4680302 chr20:4680302 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_131055 0 0 1 0 1 PRNP chr20:4680216 3'AG 4680216 Downstream 87bp
chr5 175530289 175530289 1 + G C KIRC 175530289 + 175530269 175530309 41 ACGGCGAGGAGGAGGACCCAGAGGAGGTGAAGGTCAGGCCA ACGGCGAGGAGGAGGACCCACAGGAGGTGAAGGTCAGGCCA Direct Gain 0 0.95329452515508 0 0.899239182472229 prediction 0.906589050310159 Functional Gain - FAM153B ENSG00000182230 CDS Human protein_coding chr5:175530289 chr5:175530289 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_131069 0 0 0 0 2 FAM153B chr5:175530230 3'AG 175530230 Downstream 60bp
chr5 175530289 175530289 1 + G C KIRC 175530289 + 175530269 175530309 41 ACGGCGAGGAGGAGGACCCAGAGGAGGTGAAGGTCAGGCCA ACGGCGAGGAGGAGGACCCACAGGAGGTGAAGGTCAGGCCA Direct Gain 0 0.95329452515508 0 0.899239182472229 prediction 0.906589050310159 Functional Gain - FAM153B ENSG00000182230 CDS Human protein_coding chr5:175530289 chr5:175530289 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_131069 0 0 0 0 2 FAM153B chr5:175530300 5'GT 175530300 Upstream 12bp
chr19 45762390 45762390 1 + T C STAD 45762390 + 45762370 45762410 41 TACCGCCTGCTGAGGACCATTGGGAAGGGCAACTTTGCCAA TACCGCCTGCTGAGGACCATCGGGAAGGGCAACTTTGCCAA Direct Gain 0 0.953265907681195 0 0.961034834384918 prediction 0.90653181536239 Functional Gain - MARK4 ENSG00000007047 CDS Human protein_coding chr19:45762390 chr19:45762390 synonymous SNV . 0 21 hm5C_associated_SNPs_131071 0 0 1 0 1 MARK4 chr19:45762447 5'GT 45762447 Upstream 58bp
chr6 54735391 54735391 1 + T C STAD 54735391 + 54735371 54735411 41 ATATGTGATGCCCGGACTCTTAGGGGGCACCCATATAGATC ATATGTGATGCCCGGACTCTCAGGGGGCACCCATATAGATC Direct Gain 0 0.953210080148749 0 0.892041444778442 prediction 0.906420160297498 Functional Gain - FAM83B ENSG00000168143 CDS Human protein_coding chr6:54735391 chr6:54735391 nonsynonymous SNV 0.969 0 21 hm5C_associated_SNPs_131076 0 0 0 0 1 FAM83B chr6:54735488 5'GT 54735488 Upstream 98bp
chr3 45046805 45046805 1 + G C LUSC 45046805 + 45046785 45046825 41 TACCAAGGGTTCGAGTTTTGGAGGATGAAGAGGGGTCGAAG TACCAAGGGTTCGAGTTTTGCAGGATGAAGAGGGGTCGAAG Direct Gain 0 0.953073246471123 0 0.789115786552429 prediction 0.906146492942246 Functional Gain - EXOSC7 ENSG00000075914 CDS Human protein_coding chr3:45046805 chr3:45046805 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_131088 0 0 1 0 1 EXOSC7 chr3:45046783 3'AG 45046783 Downstream 23bp
chr12 110341781 110341781 1 + G C BLCA 110341781 + 110341761 110341801 41 GAGAAGATGAAGGAGGAGAAGAGGAGGAGTCTGGAGGCCCG GAGAAGATGAAGGAGGAGAACAGGAGGAGTCTGGAGGCCCG Direct Gain 0 0.953029553597626 0 0.654311895370483 prediction 0.906059107195252 Functional Gain - TCHP ENSG00000139437 CDS Human protein_coding chr12:110341781 chr12:110341781 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_131090 0 0 1 0 1 TCHP chr12:110341742 3'AG 110341742 Downstream 40bp
chr9 127975748 127975748 1 + T C UCEC 127975748 + 127975728 127975768 41 ACCTGACCGTATCTGGGTATTTGGAGGTGCCAACCAATCAG ACCTGACCGTATCTGGGTATCTGGAGGTGCCAACCAATCAG Direct Gain 0 0.952898572879402 0 0.660279631614685 prediction 0.905797145758803 Functional Gain - RABEPK ENSG00000136933 CDS Human protein_coding chr9:127975748 chr9:127975748 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131095 0 0 1 0 2 RABEPK chr9:127975649 3'AG 127975649 Downstream 100bp
chr9 127975748 127975748 1 + T C UCEC 127975748 + 127975728 127975768 41 ACCTGACCGTATCTGGGTATTTGGAGGTGCCAACCAATCAG ACCTGACCGTATCTGGGTATCTGGAGGTGCCAACCAATCAG Direct Gain 0 0.952898572879402 0 0.660279631614685 prediction 0.905797145758803 Functional Gain - RABEPK ENSG00000136933 CDS Human protein_coding chr9:127975748 chr9:127975748 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131095 0 0 1 0 2 RABEPK chr9:127975801 5'GT 127975801 Upstream 54bp
chr14 57075932 57075932 1 + T C CESC 57075932 + 57075912 57075952 41 TTAATCACGCCCGGTGGACCTGGGGAGACCAGACAACACTG TTAATCACGCCCGGTGGACCCGGGGAGACCAGACAACACTG Direct Gain 0 0.952870409818492 0 0.91214919090271 prediction 0.905740819636983 Functional Gain - TMEM260 ENSG00000070269 CDS Human protein_coding chr14:57075932 chr14:57075932 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131098 0 0 0 1 1 TMEM260 chr14:57076003 5'GT 57076003 Upstream 72bp
chr3 35780863 35780863 1 + G C LUSC 35780863 + 35780843 35780883 41 CCCTGAGCCGGCAGTCCTCGGGGGAGACTCCTGAACCCCCA CCCTGAGCCGGCAGTCCTCGCGGGAGACTCCTGAACCCCCA Direct Gain 0 0.952843257247706 0 0.9669109582901 prediction 0.905686514495412 Functional Gain - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35780863 chr3:35780863 nonsynonymous SNV 0.950 4 21 hm5C_associated_SNPs_131099 0 0 0 0 1 ARPP21 chr3:35780809 3'AG 35780809 Downstream 55bp
chr1 151740666 151740666 1 + T C rs2495397 151740666 + 151740646 151740686 41 TCTGTGACCGTCGACTCTTCTTGGATATCCCATATCAGGCC TCTGTGACCGTCGACTCTTCCTGGATATCCCATATCAGGCC Direct Gain 0 0.952833439941783 0 0.833666622638702 prediction 0.905666879883566 Functional Gain - OAZ3 ENSG00000143450 CDS Human protein_coding chr1:151740666 chr1:151740666 synonymous SNV . 0 21 hm5C_associated_SNPs_131101 0 0 0 0 1 OAZ3 chr1:151740709 5'GT 151740709 Upstream 44bp
chr17 37082081 37082081 1 + A C rs573556 37082081 + 37082061 37082101 41 GCTCAGAAGGAAGGATGGAGATGAATGGCCGAGTGCCCTGC GCTCAGAAGGAAGGATGGAGCTGAATGGCCGAGTGCCCTGC Direct Gain 0 0.952795193884473 0 0.520785868167877 prediction 0.905590387768946 Functional Gain - LINC00672 ENSG00000263874 ncRNA_exonic Human protein_coding chr17:37082081 chr17:37082081 . . 0 21 hm5C_associated_SNPs_131103 0 0 0 0 1 LINC00672 chr17:37082144 5'GT 37082144 Upstream 64bp
chr5 65440340 65440340 1 + G C CESC 65440340 + 65440320 65440360 41 TTTCCTTCCTAGGAGAAATCGAGGAGCTGCGGCTCTACCCC TTTCCTTCCTAGGAGAAATCCAGGAGCTGCGGCTCTACCCC Direct Gain 0 0.952626540340894 0 0.897748708724976 prediction 0.905253080681788 Functional Gain - SREK1 ENSG00000153914 CDS Human protein_coding chr5:65440340 chr5:65440340 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_131115 0 0 1 0 1 SREK1 chr5:65440365 5'GT 65440365 Upstream 26bp
chr19 30502138 30502138 1 + T C rs145276289 30502138 + 30502118 30502158 41 ATCAGGACGCCTGCAGACATTTACAGGTGGGAGGCGCTCAC ATCAGGACGCCTGCAGACATCTACAGGTGGGAGGCGCTCAC Direct Gain 0 0.952500068849996 0 0.812299251556396 prediction 0.905000137699993 Functional Gain - URI1 ENSG00000105176 CDS Human protein_coding chr19:30502138 chr19:30502138 synonymous SNV . 0 21 hm5C_associated_SNPs_131126 0 0 1 0 1 URI1 chr19:30502143 5'GT 30502143 Upstream 6bp
chr19 40478119 40478119 1 + G C HNSC 40478119 + 40478099 40478139 41 CCTTCCTGGGCCCTGAGCCTGAGGACCTGGAGGACCTGTAC CCTTCCTGGGCCCTGAGCCTCAGGACCTGGAGGACCTGTAC Direct Gain 0 0.952442924117939 0 0.924501299858093 prediction 0.904885848235878 Functional Gain - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40478119 chr19:40478119 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_131131 0 0 1 0 2 PSMC4 chr19:40478053 3'AG 40478053 Downstream 67bp
chr19 40478119 40478119 1 + G C HNSC 40478119 + 40478099 40478139 41 CCTTCCTGGGCCCTGAGCCTGAGGACCTGGAGGACCTGTAC CCTTCCTGGGCCCTGAGCCTCAGGACCTGGAGGACCTGTAC Direct Gain 0 0.952442924117939 0 0.924501299858093 prediction 0.904885848235878 Functional Gain - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40478119 chr19:40478119 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_131131 0 0 1 0 2 PSMC4 chr19:40478151 5'GT 40478151 Upstream 33bp
chr11 93517870 93517870 1 + A C CESC 93517870 + 93517850 93517890 41 GGAGGAGGCGGCGGGGACCGAGGGCGACGCGCAGGAGTGGC GGAGGAGGCGGCGGGGACCGCGGGCGACGCGCAGGAGTGGC Direct Gain 0 0.952327803239528 0 0.960577726364136 prediction 0.904655606479057 Functional Gain - MED17 ENSG00000042429 CDS Human protein_coding chr11:93517870 chr11:93517870 nonsynonymous SNV 0.469 0 21 hm5C_associated_SNPs_131137 0 0 1 0 1 MED17 chr11:93517929 5'GT 93517929 Upstream 60bp
chr17 78210810 78210810 1 + G C rs145160723 78210810 + 78210790 78210830 41 ACCAGCCTTTCATCCTAACAGGGGAGACAGCTGAGGGGCTC ACCAGCCTTTCATCCTAACACGGGAGACAGCTGAGGGGCTC Direct Gain 0 0.952101550933177 0 0.718795537948608 prediction 0.904203101866354 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78210810 chr17:78210810 nonsynonymous SNV 0.137 4 21 hm5C_associated_SNPs_131153 0 0 1 0 2 SLC26A11 chr17:78210727 3'AG 78210727 Downstream 84bp
chr17 78210810 78210810 1 + G C rs145160723 78210810 + 78210790 78210830 41 ACCAGCCTTTCATCCTAACAGGGGAGACAGCTGAGGGGCTC ACCAGCCTTTCATCCTAACACGGGAGACAGCTGAGGGGCTC Direct Gain 0 0.952101550933177 0 0.718795537948608 prediction 0.904203101866354 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78210810 chr17:78210810 nonsynonymous SNV 0.137 4 21 hm5C_associated_SNPs_131153 0 0 1 0 2 SLC26A11 chr17:78210902 5'GT 78210902 Upstream 93bp
chr4 187173201 187173201 1 + T C SKCM 187173201 + 187173181 187173221 41 AAAAACAAGCACACGCATTGTTGGAGGAACAAACTCTTCTT AAAAACAAGCACACGCATTGCTGGAGGAACAAACTCTTCTT Direct Gain 0 0.952066596738868 0 0.731397688388824 prediction 0.904133193477735 Functional Gain - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187173201 chr4:187173201 nonsynonymous SNV 0.924 4 21 hm5C_associated_SNPs_131154 0 0 0 0 1 KLKB1 chr4:187173171 3'AG 187173171 Downstream 31bp
chr1 22970524 22970524 1 + T C rs367838299 22970524 + 22970504 22970544 41 TTCCTTCTCCGGGATGGACGTGGGGCCCAGCTCCCTGCCCC TTCCTTCTCCGGGATGGACGCGGGGCCCAGCTCCCTGCCCC Direct Gain 0 0.951834200251725 0 0.982383072376251 prediction 0.903668400503449 Functional Gain - C1QC ENSG00000159189 CDS Human protein_coding chr1:22970524 chr1:22970524 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_131167 0 0 0 0 1 C1QC chr1:22970504 3'AG 22970504 Downstream 21bp
chr17 7287876 7287876 1 + T C CESC 7287876 + 7287856 7287896 41 GGATGTTTGGGGTGACGCTGTGGGAGATGTTCTCCGGGGGC GGATGTTTGGGGTGACGCTGCGGGAGATGTTCTCCGGGGGC Direct Gain 0 0.951784148221323 0 0.935893833637238 prediction 0.903568296442646 Functional Gain - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7287876 chr17:7287876 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_131172 0 0 0 1 1 TNK1 chr17:7287803 3'AG 7287803 Downstream 74bp
chr19 44030385 44030385 1 - C G BLCA 44030385 - 44030365 44030405 41 CCCAGGCTGACTTACACATTGAGGATGGAGACTCCATCCGC CCCAGGCTGACTTACACATTCAGGATGGAGACTCCATCCGC Direct Gain 0 0.951747736731089 0 0.757896542549133 prediction 0.903495473462177 Functional Gain - ETHE1 ENSG00000105755 CDS Human protein_coding chr19:44030385 chr19:44030385 nonsynonymous SNV 0.428 1 21 hm5C_associated_SNPs_131176 0 0 1 0 1 ETHE1 chr19:44030353 5'GT 44030353 Upstream 33bp
chr3 149193684 149193684 1 + T C rs1802837 149193684 + 149193664 149193704 41 TGCTGCGGCAACGAGGGCTGTGGGAAGCGATTTGCGGTGAG TGCTGCGGCAACGAGGGCTGCGGGAAGCGATTTGCGGTGAG Direct Gain 0 0.951668567398942 0 0.797668159008026 prediction 0.903337134797883 Functional Gain - TM4SF4 ENSG00000169903 CDS Human protein_coding chr3:149193684 chr3:149193684 synonymous SNV . 0 21 hm5C_associated_SNPs_131178 0 0 0 0 2 TM4SF4 chr3:149193610 3'AG 149193610 Downstream 75bp
chr3 149193684 149193684 1 + T C rs1802837 149193684 + 149193664 149193704 41 TGCTGCGGCAACGAGGGCTGTGGGAAGCGATTTGCGGTGAG TGCTGCGGCAACGAGGGCTGCGGGAAGCGATTTGCGGTGAG Direct Gain 0 0.951668567398942 0 0.797668159008026 prediction 0.903337134797883 Functional Gain - TM4SF4 ENSG00000169903 CDS Human protein_coding chr3:149193684 chr3:149193684 synonymous SNV . 0 21 hm5C_associated_SNPs_131178 0 0 0 0 2 TM4SF4 chr3:149193699 5'GT 149193699 Upstream 16bp
chr20 209989 209989 1 + A C rs143345128 209989 + 209969 210009 41 CACTGCAATGTGGATGAAAAAGAGATACAGAAATGCAAGAT CACTGCAATGTGGATGAAAACGAGATACAGAAATGCAAGAT Direct Gain 0 0.95145469704936 0 0.602636337280273 prediction 0.902909394098719 Functional Gain - DEFB129 ENSG00000125903 CDS Human protein_coding chr20:209989 chr20:209989 nonsynonymous SNV 0.140 2 21 hm5C_associated_SNPs_131202 0 0 0 0 1 DEFB129 chr20:209919 3'AG 209919 Downstream 71bp
chr16 24166130 24166130 1 + T C rs432998 24166130 + 24166110 24166150 41 AAGCGGGTGTTGGCCCTGCCTGGGAAGCCGCCCTTCCTGAC AAGCGGGTGTTGGCCCTGCCCGGGAAGCCGCCCTTCCTGAC Direct Gain 0 0.951454612640576 0 0.921088576316833 prediction 0.902909225281151 Functional Gain - PRKCB ENSG00000166501 CDS Human protein_coding chr16:24166130 chr16:24166130 synonymous SNV . 0 21 hm5C_associated_SNPs_131203 0 0 1 0 1 PRKCB chr16:24166178 5'GT 24166178 Upstream 49bp
chr16 50324449 50324449 1 + G C LUAD 50324449 + 50324429 50324469 41 CCCTCTCTGTGCTGATGTACGTCGAGTGTCTCCTGCGGCGC CCCTCTCTGTGCTGATGTACCTCGAGTGTCTCCTGCGGCGC Direct Gain 0 0.951417557201854 0 0.768563866615295 prediction 0.902835114403708 Functional Gain - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50324449 chr16:50324449 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_131207 0 0 1 0 1 ADCY7 chr16:50324368 3'AG 50324368 Downstream 82bp
chr13 101707748 101707748 1 + T C UCEC 101707748 + 101707728 101707768 41 GCAGGAAGCCGCGTCAGTCATGGGGTTCATTTTGCACACGA GCAGGAAGCCGCGTCAGTCACGGGGTTCATTTTGCACACGA Direct Gain 0 0.951367379409487 0 0.904586315155029 prediction 0.902734758818974 Functional Gain - NALCN ENSG00000102452 CDS Human protein_coding chr13:101707748 chr13:101707748 nonsynonymous SNV 0.992 1 21 hm5C_associated_SNPs_131212 0 0 0 0 1 NALCN chr13:101707798 5'GT 101707798 Upstream 51bp
chr14 64906956 64906956 1 + A C COAD 64906956 + 64906936 64906976 41 GGTGGTGGCATCCAGTAAGAAAGGAGAGCCCGTCAGTGCCG GGTGGTGGCATCCAGTAAGACAGGAGAGCCCGTCAGTGCCG Direct Gain 0 0.951343336367118 0 0.704656362533569 prediction 0.902686672734236 Functional Gain - MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64906956 chr14:64906956 nonsynonymous SNV 0.658 0 21 hm5C_associated_SNPs_131216 0 0 1 0 1 MTHFD1 chr14:64906984 5'GT 64906984 Upstream 29bp
chr10 26789960 26789960 1 + G C BLCA 26789960 + 26789940 26789980 41 CCACTGGTATCAGCCAATATGAGGATGACTTACCACCTCCA CCACTGGTATCAGCCAATATCAGGATGACTTACCACCTCCA Direct Gain 0 0.951323706243198 0 0.972801566123962 prediction 0.902647412486395 Functional Gain - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26789960 chr10:26789960 nonsynonymous SNV 0.009 1 21 hm5C_associated_SNPs_131217 0 0 0 0 1 APBB1IP chr10:26790040 5'GT 26790040 Upstream 81bp
chr7 30197090 30197090 1 + G C OV 30197090 + 30197070 30197110 41 ATGCAGATGACGATGCGTTTGAAGAGTACAGTGCTGACGTG ATGCAGATGACGATGCGTTTCAAGAGTACAGTGCTGACGTG Direct Gain 0 0.951121660799378 0 0.397308647632599 prediction 0.902243321598757 Functional Gain - MTURN ENSG00000180354 CDS Human protein_coding chr7:30197090 chr7:30197090 nonsynonymous SNV 0.992 2 21 hm5C_associated_SNPs_131230 0 0 1 0 1 MTURN chr7:30197054 3'AG 30197054 Downstream 37bp
chr6 15512463 15512463 1 + G C BLCA 15512463 + 15512443 15512483 41 CCCCGGAGGTGCTGTGCAAAGAGGGGATCAAGGTGCACAGG CCCCGGAGGTGCTGTGCAAACAGGGGATCAAGGTGCACAGG Direct Gain 0 0.95111408984821 0 0.851192474365234 prediction 0.90222817969642 Functional Gain - JARID2 ENSG00000008083 CDS Human protein_coding chr6:15512463 chr6:15512463 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_131231 0 0 1 0 1 JARID2 chr6:15512439 3'AG 15512439 Downstream 25bp
chr17 19912728 19912728 1 + A C rs138667230 19912728 + 19912708 19912748 41 GGTTGCGGCGGCGCTGAGCCAGCGGGGCCGGTGAGTACTAG GGTTGCGGCGGCGCTGAGCCCGCGGGGCCGGTGAGTACTAG Direct Gain 0 0.95091671780433 0 0.918063998222351 prediction 0.901833435608661 Functional Gain - SPECC1 ENSG00000128487 UTR5 Human protein_coding chr17:19912728 chr17:19912728 . . 0 21 hm5C_associated_SNPs_131239 0 0 0 0 1 SPECC1 chr17:19912737 5'GT 19912737 Upstream 10bp
chr2 173832152 173832152 1 + G C CESC 173832152 + 173832132 173832172 41 ATGGGCCCCGACGCCCACATGAGGATGATCCTTCGCAAACC ATGGGCCCCGACGCCCACATCAGGATGATCCTTCGCAAACC Direct Gain 0 0.950793081286388 0 0.894120395183563 prediction 0.901586162572777 Functional Gain - RAPGEF4 ENSG00000091428 CDS Human protein_coding chr2:173832152 chr2:173832152 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_131248 0 0 1 0 1 RAPGEF4 chr2:173832172 5'GT 173832172 Upstream 21bp
chr20 58569540 58569540 1 + T C HNSC 58569540 + 58569520 58569560 41 ACATGGAAGTTGGGGAGAAATTGGGGTGAGTTTTTGTATTG ACATGGAAGTTGGGGAGAAACTGGGGTGAGTTTTTGTATTG Direct Gain 0 0.950774714178565 0 0.677741706371307 prediction 0.901549428357131 Functional Gain - CDH26 ENSG00000124215 CDS Human protein_coding chr20:58569540 chr20:58569540 synonymous SNV . 0 21 hm5C_associated_SNPs_131253 0 0 0 0 1 CDH26 chr20:58569544 5'GT 58569544 Upstream 5bp
chrX 129060054 129060054 1 + G C LUSC 129060054 + 129060034 129060074 41 GCTGGGGCGAGTGGGGTGGTGTGGGCCTAAAGCCCAGTGCC GCTGGGGCGAGTGGGGTGGTCTGGGCCTAAAGCCCAGTGCC Direct Gain 0 0.95059512672631 0 0.926063299179077 prediction 0.90119025345262 Functional Gain - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129060054 chrX:129060054 nonsynonymous SNV 0.952 0 21 hm5C_associated_SNPs_131264 0 0 1 0 1 UTP14A chrX:129060088 5'GT 129060088 Upstream 35bp
chr3 39129649 39129649 1 + A C UCEC 39129649 + 39129629 39129669 41 GCAGGAGAACCGAGTGCAGAAGGGAAATGGATATTTTCAAG GCAGGAGAACCGAGTGCAGACGGGAAATGGATATTTTCAAG Direct Gain 0 0.950547488645125 0 0.599987387657166 prediction 0.90109497729025 Functional Gain - WDR48 ENSG00000114742 CDS Human protein_coding chr3:39129649 chr3:39129649 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_131267 0 0 1 0 2 WDR48 chr3:39129619 3'AG 39129619 Downstream 31bp
chr3 39129649 39129649 1 + A C UCEC 39129649 + 39129629 39129669 41 GCAGGAGAACCGAGTGCAGAAGGGAAATGGATATTTTCAAG GCAGGAGAACCGAGTGCAGACGGGAAATGGATATTTTCAAG Direct Gain 0 0.950547488645125 0 0.599987387657166 prediction 0.90109497729025 Functional Gain - WDR48 ENSG00000114742 CDS Human protein_coding chr3:39129649 chr3:39129649 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_131267 0 0 1 0 2 WDR48 chr3:39129724 5'GT 39129724 Upstream 76bp
chr3 136708386 136708386 1 + G C BLCA 136708386 + 136708366 136708406 41 GAGTTCCTTGTGGCCTACTGGAGGAGGGAGCCTGGTGCCGA GAGTTCCTTGTGGCCTACTGCAGGAGGGAGCCTGGTGCCGA Direct Gain 0 0.950501329903078 0 0.84898966550827 prediction 0.901002659806157 Functional Gain - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136708386 chr3:136708386 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131272 0 0 0 0 1 IL20RB chr3:136708407 5'GT 136708407 Upstream 22bp
chr21 41151098 41151098 1 + T C SKCM 41151098 + 41151078 41151118 41 ATTGCCTACTTGGGGCAAAGTTGGACTTGGACTAGCAGGCA ATTGCCTACTTGGGGCAAAGCTGGACTTGGACTAGCAGGCA Direct Gain 0 0.950350381757851 0 0.782698512077332 prediction 0.900700763515702 Functional Gain - IGSF5 ENSG00000183067 CDS Human protein_coding chr21:41151098 chr21:41151098 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_131278 0 0 0 0 1 IGSF5 chr21:41151017 3'AG 41151017 Downstream 82bp
chr7 64853783 64853783 1 + G C UCEC 64853783 + 64853763 64853803 41 GGAAAAGAGCCCTGGAATCTGAAGAGACATGAGATGGTAGA GGAAAAGAGCCCTGGAATCTCAAGAGACATGAGATGGTAGA Direct Gain 0 0.950289024556562 0 0.918659329414368 prediction 0.900578049113125 Functional Gain - ZNF92 ENSG00000146757 CDS Human protein_coding chr7:64853783 chr7:64853783 synonymous SNV . 0 21 hm5C_associated_SNPs_131283 0 0 1 0 2 ZNF92 chr7:64853719 3'AG 64853719 Downstream 65bp
chr7 64853783 64853783 1 + G C UCEC 64853783 + 64853763 64853803 41 GGAAAAGAGCCCTGGAATCTGAAGAGACATGAGATGGTAGA GGAAAAGAGCCCTGGAATCTCAAGAGACATGAGATGGTAGA Direct Gain 0 0.950289024556562 0 0.918659329414368 prediction 0.900578049113125 Functional Gain - ZNF92 ENSG00000146757 CDS Human protein_coding chr7:64853783 chr7:64853783 synonymous SNV . 0 21 hm5C_associated_SNPs_131283 0 0 1 0 2 ZNF92 chr7:64853814 5'GT 64853814 Upstream 32bp
chr19 39993679 39993679 1 + G C rs572869684 39993679 + 39993659 39993699 41 GCCCCTGCGCACCGCTCGAGGACGAATGTGAGGCGCCGCGT GCCCCTGCGCACCGCTCGAGCACGAATGTGAGGCGCCGCGT Direct Gain 0 0.950276858855599 0 0.364154577255249 prediction 0.900553717711197 Functional Gain - DLL3 ENSG00000090932 CDS Human protein_coding chr19:39993679 chr19:39993679 nonsynonymous SNV 0.280 1 21 hm5C_associated_SNPs_131284 0 0 0 0 1 DLL3 chr19:39993697 5'GT 39993697 Upstream 19bp
chr15 45248926 45248926 1 + G C STAD 45248926 + 45248906 45248946 41 TTGGCGACGCCATGTTTCAAGGGCAGCGCGGTTGGTTTTGC TTGGCGACGCCATGTTTCAACGGCAGCGCGGTTGGTTTTGC Direct Gain 0 0.950227858468505 0 0.592611372470856 prediction 0.90045571693701 Functional Gain - TERB2 ENSG00000167014 CDS Human protein_coding chr15:45248926 chr15:45248926 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_131286 0 0 0 0 1 TERB2 chr15:45248980 5'GT 45248980 Upstream 55bp
chr19 30502084 30502084 1 + T C COAD 30502084 + 30502064 30502104 41 CGTAAACGAAAGAACAGCACTGGCAGTGGCCACTCTGCCCA CGTAAACGAAAGAACAGCACCGGCAGTGGCCACTCTGCCCA Direct Gain 0 0.950206525478915 0 0.710090696811676 prediction 0.90041305095783 Functional Gain - URI1 ENSG00000105176 CDS Human protein_coding chr19:30502084 chr19:30502084 synonymous SNV . 0 21 hm5C_associated_SNPs_131291 0 0 1 0 2 URI1 chr19:30502001 3'AG 30502001 Downstream 84bp
chr19 30502084 30502084 1 + T C COAD 30502084 + 30502064 30502104 41 CGTAAACGAAAGAACAGCACTGGCAGTGGCCACTCTGCCCA CGTAAACGAAAGAACAGCACCGGCAGTGGCCACTCTGCCCA Direct Gain 0 0.950206525478915 0 0.710090696811676 prediction 0.90041305095783 Functional Gain - URI1 ENSG00000105176 CDS Human protein_coding chr19:30502084 chr19:30502084 synonymous SNV . 0 21 hm5C_associated_SNPs_131291 0 0 1 0 2 URI1 chr19:30502143 5'GT 30502143 Upstream 60bp
chr7 43830888 43830888 1 + T C rs1802846 43830888 + 43830868 43830908 41 ATGGAGTCCAGCAGATTTCTTTGGAGGATGCTCTTTCCAGC ATGGAGTCCAGCAGATTTCTCTGGAGGATGCTCTTTCCAGC Direct Gain 0 0.950196430384263 0 0.879564762115479 prediction 0.900392860768527 Functional Gain - BLVRA ENSG00000106605 CDS Human protein_coding chr7:43830888 chr7:43830888 synonymous SNV . 0 21 hm5C_associated_SNPs_131293 0 0 1 0 2 BLVRA chr7:43830848 3'AG 43830848 Downstream 41bp
chr7 43830888 43830888 1 + T C rs1802846 43830888 + 43830868 43830908 41 ATGGAGTCCAGCAGATTTCTTTGGAGGATGCTCTTTCCAGC ATGGAGTCCAGCAGATTTCTCTGGAGGATGCTCTTTCCAGC Direct Gain 0 0.950196430384263 0 0.879564762115479 prediction 0.900392860768527 Functional Gain - BLVRA ENSG00000106605 CDS Human protein_coding chr7:43830888 chr7:43830888 synonymous SNV . 0 21 hm5C_associated_SNPs_131293 0 0 1 0 2 BLVRA chr7:43830967 5'GT 43830967 Upstream 80bp
chr16 89289580 89289580 1 + G C BLCA 89289580 + 89289560 89289600 41 TTTAGGACGCGGTGACCTTTGACGACGTGGCTGTGGACTTC TTTAGGACGCGGTGACCTTTCACGACGTGGCTGTGGACTTC Direct Gain 0 0.950162280517711 0 0.414456963539124 prediction 0.900324561035423 Functional Gain - ZNF778 ENSG00000170100 CDS Human protein_coding chr16:89289580 chr16:89289580 nonsynonymous SNV 0.225 2 21 hm5C_associated_SNPs_131297 0 0 1 0 1 ZNF778 chr16:89289565 3'AG 89289565 Downstream 16bp
chr2 102968076 102968076 1 + A C LIHC 102968076 + 102968056 102968096 41 CCCCTCAGATCACTCACAATAAGGAGTTTGCCTACGAGCAG CCCCTCAGATCACTCACAATCAGGAGTTTGCCTACGAGCAG Direct Gain 0 0.950113791043015 0 0.954075396060944 prediction 0.90022758208603 Functional Gain - IL1RL1 ENSG00000115602 CDS Human protein_coding chr2:102968076 chr2:102968076 nonsynonymous SNV 0.027 0 21 hm5C_associated_SNPs_131302 0 0 0 0 1 IL1RL1 chr2:102967996 3'AG 102967996 Downstream 81bp
chr1 201965318 201965318 1 + G C OV 201965318 + 201965298 201965338 41 GCCTGATTGATGCTGCCAAGGAGGAGTACAACGGGGTGATA GCCTGATTGATGCTGCCAAGCAGGAGTACAACGGGGTGATA Direct Gain 0 0.949984551463685 0 0.84266322851181 prediction 0.899969102927369 Functional Gain - RNPEP ENSG00000176393 CDS Human protein_coding chr1:201965318 chr1:201965318 nonsynonymous SNV 0.516 0 21 hm5C_associated_SNPs_131311 0 0 1 0 2 RNPEP chr1:201965275 3'AG 201965275 Downstream 44bp
chr1 201965318 201965318 1 + G C OV 201965318 + 201965298 201965338 41 GCCTGATTGATGCTGCCAAGGAGGAGTACAACGGGGTGATA GCCTGATTGATGCTGCCAAGCAGGAGTACAACGGGGTGATA Direct Gain 0 0.949984551463685 0 0.84266322851181 prediction 0.899969102927369 Functional Gain - RNPEP ENSG00000176393 CDS Human protein_coding chr1:201965318 chr1:201965318 nonsynonymous SNV 0.516 0 21 hm5C_associated_SNPs_131311 0 0 1 0 2 RNPEP chr1:201965391 5'GT 201965391 Upstream 74bp
chr14 93276689 93276689 1 + G C SKCM 93276689 + 93276669 93276709 41 CATGAAGCGGATGCCACTCTGAAGAGAGAGCAGGAGAGCTA CATGAAGCGGATGCCACTCTCAAGAGAGAGCAGGAGAGCTA Direct Gain 0 0.949980287581833 0 0.908628940582275 prediction 0.899960575163666 Functional Gain - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93276689 chr14:93276689 synonymous SNV . 0 21 hm5C_associated_SNPs_131312 0 0 1 0 2 GOLGA5 chr14:93276599 3'AG 93276599 Downstream 91bp
chr14 93276689 93276689 1 + G C SKCM 93276689 + 93276669 93276709 41 CATGAAGCGGATGCCACTCTGAAGAGAGAGCAGGAGAGCTA CATGAAGCGGATGCCACTCTCAAGAGAGAGCAGGAGAGCTA Direct Gain 0 0.949980287581833 0 0.908628940582275 prediction 0.899960575163666 Functional Gain - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93276689 chr14:93276689 synonymous SNV . 0 21 hm5C_associated_SNPs_131312 0 0 1 0 2 GOLGA5 chr14:93276722 5'GT 93276722 Upstream 34bp
chr17 48557348 48557348 1 + T C rs2290861 48557348 + 48557328 48557368 41 AGCCCACCTGCCTGCAGACTTGGAAGTCACATTGGAGGCTA AGCCCACCTGCCTGCAGACTCGGAAGTCACATTGGAGGCTA Direct Gain 0 0.949941199856455 0 0.48283189535141 prediction 0.899882399712909 Functional Gain - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48557348 chr17:48557348 nonsynonymous SNV 0.983 0 21 hm5C_associated_SNPs_131317 0 0 1 0 1 RSAD1 chr17:48557445 5'GT 48557445 Upstream 98bp
chr7 37907439 37907439 1 + G C LUAD 37907439 + 37907419 37907459 41 CCGAACCTAACGAACGATCTGAGGATCAACCTGAGGTCGAA CCGAACCTAACGAACGATCTCAGGATCAACCTGAGGTCGAA Direct Gain 0 0.949579833901467 0 0.833070635795593 prediction 0.899159667802933 Functional Gain - NME8 ENSG00000086288 CDS Human protein_coding chr7:37907439 chr7:37907439 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_131339 0 0 0 0 1 NME8 chr7:37907500 5'GT 37907500 Upstream 62bp
chr4 187003567 187003567 1 + T C rs75290011 187003567 + 187003547 187003587 41 GCCTTACAGAGAAGCTATGTTTGGAATTAGCAAACACAAGC GCCTTACAGAGAAGCTATGTCTGGAATTAGCAAACACAAGC Direct Gain 0 0.949571210378295 0 0.747767090797424 prediction 0.89914242075659 Functional Gain - TLR3 ENSG00000164342 CDS Human protein_coding chr4:187003567 chr4:187003567 synonymous SNV . 0 21 hm5C_associated_SNPs_131340 0 0 0 0 1 TLR3 chr4:187003474 3'AG 187003474 Downstream 94bp
chr10 26998620 26998620 1 + T C STAD 26998620 + 26998600 26998640 41 ATGTCTGAGTACTACTTTGATGGGAAAGGGAAAGCCTTTCG ATGTCTGAGTACTACTTTGACGGGAAAGGGAAAGCCTTTCG Direct Gain 0 0.949570799526145 0 0.792957544326782 prediction 0.899141599052291 Functional Gain - PDSS1 ENSG00000148459 CDS Human protein_coding chr10:26998620 chr10:26998620 synonymous SNV . 0 21 hm5C_associated_SNPs_131341 0 0 1 0 2 PDSS1 chr10:26998567 3'AG 26998567 Downstream 54bp
chr10 26998620 26998620 1 + T C STAD 26998620 + 26998600 26998640 41 ATGTCTGAGTACTACTTTGATGGGAAAGGGAAAGCCTTTCG ATGTCTGAGTACTACTTTGACGGGAAAGGGAAAGCCTTTCG Direct Gain 0 0.949570799526145 0 0.792957544326782 prediction 0.899141599052291 Functional Gain - PDSS1 ENSG00000148459 CDS Human protein_coding chr10:26998620 chr10:26998620 synonymous SNV . 0 21 hm5C_associated_SNPs_131341 0 0 1 0 2 PDSS1 chr10:26998697 5'GT 26998697 Upstream 78bp
chr1 75602802 75602802 1 + G C LUAD 75602802 + 75602782 75602822 41 CAGGTGAGCCCCGAGGGAGCGGGGGACGAGGACTCGTGCTC CAGGTGAGCCCCGAGGGAGCCGGGGACGAGGACTCGTGCTC Direct Gain 0 0.949510089313592 0 0.963212490081787 prediction 0.899020178627185 Functional Gain - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75602802 chr1:75602802 synonymous SNV . 0 21 hm5C_associated_SNPs_131351 0 0 0 0 2 LHX8 chr1:75602785 3'AG 75602785 Downstream 18bp
chr1 75602802 75602802 1 + G C LUAD 75602802 + 75602782 75602822 41 CAGGTGAGCCCCGAGGGAGCGGGGGACGAGGACTCGTGCTC CAGGTGAGCCCCGAGGGAGCCGGGGACGAGGACTCGTGCTC Direct Gain 0 0.949510089313592 0 0.963212490081787 prediction 0.899020178627185 Functional Gain - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75602802 chr1:75602802 synonymous SNV . 0 21 hm5C_associated_SNPs_131351 0 0 0 0 2 LHX8 chr1:75602790 3'AG 75602790 Downstream 13bp
chr12 247771 247771 1 - C G LUAD 247771 - 247751 247791 41 CTCCACGTGCTGAGCGCGTCGTCGATGGACTTGGCCAGGGA CTCCACGTGCTGAGCGCGTCCTCGATGGACTTGGCCAGGGA Direct Gain 0 0.949464991445454 0 0.913685321807861 prediction 0.898929982890909 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:247771 chr12:247771 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_131354 0 0 0 0 2 IQSEC3 chr12:247717 5'GT 247717 Upstream 55bp
chr12 247771 247771 1 - C G LUAD 247771 - 247751 247791 41 CTCCACGTGCTGAGCGCGTCGTCGATGGACTTGGCCAGGGA CTCCACGTGCTGAGCGCGTCCTCGATGGACTTGGCCAGGGA Direct Gain 0 0.949464991445454 0 0.913685321807861 prediction 0.898929982890909 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:247771 chr12:247771 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_131354 0 0 0 0 2 IQSEC3 chr12:247810 3'AG 247810 Downstream 40bp
chr1 45226090 45226090 1 + T C STAD 45226090 + 45226070 45226110 41 AATGAGCGAGGCGCGGACACTTCCAGTGCTGACCGGCAGAC AATGAGCGAGGCGCGGACACCTCCAGTGCTGACCGGCAGAC Direct Gain 0 0.949342903729639 0 0.799722969532013 prediction 0.898685807459279 Functional Gain - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45226090 chr1:45226090 synonymous SNV . 0 21 hm5C_associated_SNPs_131361 0 0 1 0 1 KIF2C chr1:45226156 5'GT 45226156 Upstream 67bp
chr1 209936849 209936849 1 + A C UCEC 209936849 + 209936829 209936869 41 ACCCCCAGGAGGCCCTACAAAGGGAGCTGGTCCTAAAACAG ACCCCCAGGAGGCCCTACAACGGGAGCTGGTCCTAAAACAG Direct Gain 0 0.949340818415687 0 0.892134189605713 prediction 0.898681636831374 Functional Gain - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209936849 chr1:209936849 synonymous SNV . 0 21 hm5C_associated_SNPs_131362 0 0 0 0 2 TRAF3IP3 chr1:209936837 3'AG 209936837 Downstream 13bp
chr1 209936849 209936849 1 + A C UCEC 209936849 + 209936829 209936869 41 ACCCCCAGGAGGCCCTACAAAGGGAGCTGGTCCTAAAACAG ACCCCCAGGAGGCCCTACAACGGGAGCTGGTCCTAAAACAG Direct Gain 0 0.949340818415687 0 0.892134189605713 prediction 0.898681636831374 Functional Gain - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209936849 chr1:209936849 synonymous SNV . 0 21 hm5C_associated_SNPs_131362 0 0 0 0 2 TRAF3IP3 chr1:209936932 5'GT 209936932 Upstream 84bp
chrX 30261826 30261826 1 + T C rs73205834 30261826 + 30261806 30261846 41 TAAGAGAAGACTTTAAGAGATGAGGGAGAGAGAGCCAGAGA TAAGAGAAGACTTTAAGAGACGAGGGAGAGAGAGCCAGAGA Direct Gain 0 0.949274155133363 0 0.470073968172073 prediction 0.898548310266726 Functional Gain - MAGEB4 ENSG00000120289 UTR3 Human other chrX:30261826 chrX:30261826 . . 0 21 hm5C_associated_SNPs_131367 0 0 0 1 1 MAGEB1;MAGEB4 chrX:30261919 5'GT 30261919 Upstream 94bp
chr11 74680719 74680719 1 + T C LUSC 74680719 + 74680699 74680739 41 GAATGGATCCTGATGATATTTGGCAGCTGTCCTCCAGTCTT GAATGGATCCTGATGATATTCGGCAGCTGTCCTCCAGTCTT Direct Gain 0 0.949272881639378 0 0.92859011888504 prediction 0.898545763278756 Functional Gain - SPCS2 ENSG00000118363 CDS Human protein_coding chr11:74680719 chr11:74680719 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_131368 0 0 1 0 1 SPCS2 chr11:74680744 5'GT 74680744 Upstream 26bp
chr22 36123215 36123215 1 + G C BLCA 36123215 + 36123195 36123235 41 CTCCCGGGGCAGGGCTGTTCGAGGATCCCGTGTGGTTAAAC CTCCCGGGGCAGGGCTGTTCCAGGATCCCGTGTGGTTAAAC Direct Gain 0 0.949232661338097 0 0.893677115440369 prediction 0.898465322676195 Functional Gain - APOL5 ENSG00000128313 CDS Human protein_coding chr22:36123215 chr22:36123215 nonsynonymous SNV 0.003 2 21 hm5C_associated_SNPs_131371 0 0 0 0 1 APOL5 chr22:36123241 5'GT 36123241 Upstream 27bp
chr21 45540617 45540617 1 + T C HNSC 45540617 + 45540597 45540637 41 GCAGGGGCGCAGGACTCCTTTGAGATTTTCGTGTGGTCCAT GCAGGGGCGCAGGACTCCTTCGAGATTTTCGTGTGGTCCAT Direct Gain 0 0.949134045133931 0 0.900740206241608 prediction 0.898268090267861 Functional Gain - PWP2 ENSG00000241945 CDS Human protein_coding chr21:45540617 chr21:45540617 synonymous SNV . 0 21 hm5C_associated_SNPs_131376 0 0 1 0 1 PWP2 chr21:45540659 5'GT 45540659 Upstream 43bp
chr4 107246190 107246190 1 + G C rs11544777 107246190 + 107246170 107246210 41 GCAAATAATGATGCTGTTCTGAAGAGACTGGAGCAGAAGGG GCAAATAATGATGCTGTTCTCAAGAGACTGGAGCAGAAGGG Direct Gain 0 0.949105460181064 0 0.837256550788879 prediction 0.898210920362127 Functional Gain - AIMP1 ENSG00000164022 CDS Human protein_coding chr4:107246190 chr4:107246190 synonymous SNV . 0 21 hm5C_associated_SNPs_131379 0 0 1 0 2 AIMP1 chr4:107246142 3'AG 107246142 Downstream 49bp
chr4 107246190 107246190 1 + G C rs11544777 107246190 + 107246170 107246210 41 GCAAATAATGATGCTGTTCTGAAGAGACTGGAGCAGAAGGG GCAAATAATGATGCTGTTCTCAAGAGACTGGAGCAGAAGGG Direct Gain 0 0.949105460181064 0 0.837256550788879 prediction 0.898210920362127 Functional Gain - AIMP1 ENSG00000164022 CDS Human protein_coding chr4:107246190 chr4:107246190 synonymous SNV . 0 21 hm5C_associated_SNPs_131379 0 0 1 0 2 AIMP1 chr4:107246275 5'GT 107246275 Upstream 86bp
chr7 97362045 97362045 1 + A C SKCM 97362045 + 97362025 97362065 41 GGTACGACAGCGACCAGATCAAGGTGAGGCCCCTTCCCAGG GGTACGACAGCGACCAGATCCAGGTGAGGCCCCTTCCCAGG Direct Gain 0 0.949075649898442 0 0.915594220161438 prediction 0.898151299796885 Functional Gain - TAC1 ENSG00000006128 CDS Human protein_coding chr7:97362045 chr7:97362045 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_131382 0 0 0 0 1 TAC1 chr7:97362047 5'GT 97362047 Upstream 3bp
chr11 1902771 1902771 1 + T C rs147746785 1902771 + 1902751 1902791 41 ACGAGGGGGCGCAGGGCGCCTTGGACAGCGGAGAGCCCCCC ACGAGGGGGCGCAGGGCGCCCTGGACAGCGGAGAGCCCCCC Direct Gain 0 0.94906509542692 0 0.581227779388428 prediction 0.898130190853841 Functional Gain - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1902771 chr11:1902771 synonymous SNV . 0 21 hm5C_associated_SNPs_131384 0 0 0 0 1 LSP1 chr11:1902826 5'GT 1902826 Upstream 56bp
chr1 55277492 55277492 1 + A C rs185058391 55277492 + 55277472 55277512 41 CTATCCAGGCCCTGGAAATTATGGGGAGAAGGGTAACCCAT CTATCCAGGCCCTGGAAATTCTGGGGAGAAGGGTAACCCAT Direct Gain 0 0.94904575956058 0 0.825932800769806 prediction 0.89809151912116 Functional Gain - LEXM ENSG00000162398 CDS Human protein_coding chr1:55277492 chr1:55277492 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131385 0 0 0 0 1 LEXM chr1:55277467 3'AG 55277467 Downstream 26bp
chr15 44846797 44846797 1 + T C UCEC 44846797 + 44846777 44846817 41 GCTAACACCAGAAGAACAATTAGCAGATAAACTGCGGCTAA GCTAACACCAGAAGAACAATCAGCAGATAAACTGCGGCTAA Direct Gain 0 0.948922192739804 0 0.936603486537933 prediction 0.897844385479608 Functional Gain - EIF3J ENSG00000104131 CDS Human protein_coding chr15:44846797 chr15:44846797 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131390 0 0 1 0 2 EIF3J chr15:44846751 3'AG 44846751 Downstream 47bp
chr15 44846797 44846797 1 + T C UCEC 44846797 + 44846777 44846817 41 GCTAACACCAGAAGAACAATTAGCAGATAAACTGCGGCTAA GCTAACACCAGAAGAACAATCAGCAGATAAACTGCGGCTAA Direct Gain 0 0.948922192739804 0 0.936603486537933 prediction 0.897844385479608 Functional Gain - EIF3J ENSG00000104131 CDS Human protein_coding chr15:44846797 chr15:44846797 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131390 0 0 1 0 2 EIF3J chr15:44846865 5'GT 44846865 Upstream 69bp
chr11 44081461 44081461 1 + G C HNSC 44081461 + 44081441 44081481 41 AAGCAGTTGGAGGATGCAATGAGGGAGTAGGCCGTCTGCCT AAGCAGTTGGAGGATGCAATCAGGGAGTAGGCCGTCTGCCT Direct Gain 0 0.94885042713024 0 0.981701254844666 prediction 0.897700854260481 Functional Gain - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44081461 chr11:44081461 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_131395 0 0 0 0 1 ACCSL chr11:44081388 3'AG 44081388 Downstream 74bp
chr17 40722064 40722064 1 + G C BLCA 40722064 + 40722044 40722084 41 AAGGGGAGGACCAGGTCTCTGACCAGGTCAAGTTCAACGTG AAGGGGAGGACCAGGTCTCTCACCAGGTCAAGTTCAACGTG Direct Gain 0 0.948809215777643 0 0.729728102684021 prediction 0.897618431555285 Functional Gain - MLX ENSG00000108788 CDS Human protein_coding chr17:40722064 chr17:40722064 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131398 0 0 1 0 1 MLX chr17:40722000 3'AG 40722000 Downstream 65bp
chr6 139186158 139186158 1 + A C PAAD 139186158 + 139186138 139186178 41 AGTGATTGGCTGGGATCCCAATGGGGAAAGGCCCCCTCTTC AGTGATTGGCTGGGATCCCACTGGGGAAAGGCCCCCTCTTC Direct Gain 0 0.94876521607231 0 0.966603398323059 prediction 0.897530432144621 Functional Gain - ECT2L ENSG00000203734 CDS Human protein_coding chr6:139186158 chr6:139186158 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_131403 0 0 0 0 1 ECT2L chr6:139186133 3'AG 139186133 Downstream 26bp
chr2 71163111 71163111 1 + T C rs17853498 71163111 + 71163091 71163131 41 ATGGAGATAGACAGCAGGCCTGGGGGGCTCCCCGGCAGTAG ATGGAGATAGACAGCAGGCCCGGGGGGCTCCCCGGCAGTAG Direct Gain 0 0.948764693697199 0 0.779722809791565 prediction 0.897529387394397 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71163111 chr2:71163111 synonymous SNV . 0 21 hm5C_associated_SNPs_131404 2 0 0 0 1 ATP6V1B1 chr2:71163202 5'GT 71163202 Upstream 92bp
chr9 131133678 131133678 1 + G C LIHC 131133678 + 131133658 131133698 41 ACATGGCTGCGCCCTTGTCAGTGGAGGTGGAGTTCGGGTGA ACATGGCTGCGCCCTTGTCACTGGAGGTGGAGTTCGGGTGA Direct Gain 0 0.948580954171735 0 0.857363998889923 prediction 0.89716190834347 Functional Gain - URM1 ENSG00000167118 CDS Human protein_coding chr9:131133678 chr9:131133678 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_131413 0 0 1 0 1 URM1 chr9:131133694 5'GT 131133694 Upstream 17bp
chr7 66237049 66237049 1 + T C SKCM 66237049 + 66237029 66237069 41 AGAAGCAGATTCAGGAGGACTGGGAGCTGGCGGAGCGGTAA AGAAGCAGATTCAGGAGGACCGGGAGCTGGCGGAGCGGTAA Direct Gain 0 0.948429766277571 0 0.839395761489868 prediction 0.896859532555143 Functional Gain - RABGEF1 ENSG00000154710;ENSG00000243335 CDS Human other chr7:66237049 chr7:66237049 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_131423 0 0 1 0 1 RABGEF1 chr7:66237065 5'GT 66237065 Upstream 17bp
chr19 7832480 7832480 1 + T C LIHC 7832480 + 7832460 7832500 41 ACCTAAATCAGGAAGGCACGTGGCAATGGGTGGACGGCTCA ACCTAAATCAGGAAGGCACGCGGCAATGGGTGGACGGCTCA Direct Gain 0 0.948396594746534 0 0.206738531589508 prediction 0.896793189493069 Functional Gain - CLEC4M ENSG00000104938 CDS Human protein_coding chr19:7832480 chr19:7832480 nonsynonymous SNV 0.047 3 21 hm5C_associated_SNPs_131428 0 0 0 0 2 CLEC4M chr19:7832402 3'AG 7832402 Downstream 79bp
chr19 7832480 7832480 1 + T C LIHC 7832480 + 7832460 7832500 41 ACCTAAATCAGGAAGGCACGTGGCAATGGGTGGACGGCTCA ACCTAAATCAGGAAGGCACGCGGCAATGGGTGGACGGCTCA Direct Gain 0 0.948396594746534 0 0.206738531589508 prediction 0.896793189493069 Functional Gain - CLEC4M ENSG00000104938 CDS Human protein_coding chr19:7832480 chr19:7832480 nonsynonymous SNV 0.047 3 21 hm5C_associated_SNPs_131428 0 0 0 0 2 CLEC4M chr19:7832514 5'GT 7832514 Upstream 35bp
chr1 170501403 170501403 1 + G C BRCA 170501403 + 170501383 170501423 41 GGATTCTCTGAGGAGGAACTGAGGAGACTAAAGCAGACTAA GGATTCTCTGAGGAGGAACTCAGGAGACTAAAGCAGACTAA Direct Gain 0 0.948305418293932 0 0.934306740760803 prediction 0.896610836587865 Functional Gain - GORAB ENSG00000120370 CDS Human protein_coding chr1:170501403 chr1:170501403 synonymous SNV . 0 21 hm5C_associated_SNPs_131434 0 0 0 0 1 GORAB chr1:170501425 5'GT 170501425 Upstream 23bp
chr1 111778692 111778692 1 + T C rs144428915 111778692 + 111778672 111778712 41 CCTTTGACTTCCATGGGTCTTGGGAAAAGCCCCTTATCACT CCTTTGACTTCCATGGGTCTCGGGAAAAGCCCCTTATCACT Direct Gain 0 0.948206578079379 0 0.961339235305786 prediction 0.896413156158757 Functional Gain - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111778692 chr1:111778692 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_131444 0 0 0 0 2 CHI3L2 chr1:111778646 3'AG 111778646 Downstream 47bp
chr1 111778692 111778692 1 + T C rs144428915 111778692 + 111778672 111778712 41 CCTTTGACTTCCATGGGTCTTGGGAAAAGCCCCTTATCACT CCTTTGACTTCCATGGGTCTCGGGAAAAGCCCCTTATCACT Direct Gain 0 0.948206578079379 0 0.961339235305786 prediction 0.896413156158757 Functional Gain - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111778692 chr1:111778692 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_131444 0 0 0 0 2 CHI3L2 chr1:111778775 5'GT 111778775 Upstream 84bp
chr9 136321236 136321236 1 + T C STAD 136321236 + 136321216 136321256 41 GCCAACAGGAACCATTGACATGCGAGGCCCAGGGCAGGCAG GCCAACAGGAACCATTGACACGCGAGGCCCAGGGCAGGCAG Direct Gain 0 0.948180104303815 0 0.93363744020462 prediction 0.89636020860763 Functional Gain - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136321236 chr9:136321236 nonsynonymous SNV 0.947 1 21 hm5C_associated_SNPs_131446 0 0 0 0 1 ADAMTS13 chr9:136321191 3'AG 136321191 Downstream 46bp
chr3 179041057 179041057 1 + G C rs142375387 179041057 + 179041037 179041077 41 GCCTCTGCGTGGGCCGGCCGGGAGGGCCTCGGGGGACTGAC GCCTCTGCGTGGGCCGGCCGCGAGGGCCTCGGGGGACTGAC Direct Gain 0 0.948146129305055 0 0.905765652656555 prediction 0.896292258610111 Functional Gain - ZNF639 ENSG00000121864 UTR5 Human protein_coding chr3:179041057 chr3:179041057 . . 0 21 hm5C_associated_SNPs_131448 0 0 1 0 1 ZNF639 chr3:179041079 5'GT 179041079 Upstream 23bp
chr3 128615300 128615300 1 + G C KIRC 128615300 + 128615280 128615320 41 GGATCATCTTGGCTGGCACTGAGGAGCAGAAAGCCAAATAC GGATCATCTTGGCTGGCACTCAGGAGCAGAAAGCCAAATAC Direct Gain 0 0.948139848491998 0 0.943816661834717 prediction 0.896279696983995 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128615300 chr3:128615300 nonsynonymous SNV 0.569 2 21 hm5C_associated_SNPs_131450 0 0 1 0 2 ACAD9 chr3:128615279 3'AG 128615279 Downstream 22bp
chr3 128615300 128615300 1 + G C KIRC 128615300 + 128615280 128615320 41 GGATCATCTTGGCTGGCACTGAGGAGCAGAAAGCCAAATAC GGATCATCTTGGCTGGCACTCAGGAGCAGAAAGCCAAATAC Direct Gain 0 0.948139848491998 0 0.943816661834717 prediction 0.896279696983995 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128615300 chr3:128615300 nonsynonymous SNV 0.569 2 21 hm5C_associated_SNPs_131450 0 0 1 0 2 ACAD9 chr3:128615379 5'GT 128615379 Upstream 80bp
chr12 124104045 124104045 1 + G C LUAD 124104045 + 124104025 124104065 41 GCCCAAGATGCCAGAATTGAGAGGAAAGCAGTTTCCAGATT GCCCAAGATGCCAGAATTGACAGGAAAGCAGTTTCCAGATT Direct Gain 0 0.948126811549187 0 0.574387490749359 prediction 0.896253623098373 Functional Gain - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124104045 chr12:124104045 nonsynonymous SNV 0.991 1 21 hm5C_associated_SNPs_131451 0 0 1 0 2 DDX55 chr12:124103979 3'AG 124103979 Downstream 67bp
chr12 124104045 124104045 1 + G C LUAD 124104045 + 124104025 124104065 41 GCCCAAGATGCCAGAATTGAGAGGAAAGCAGTTTCCAGATT GCCCAAGATGCCAGAATTGACAGGAAAGCAGTTTCCAGATT Direct Gain 0 0.948126811549187 0 0.574387490749359 prediction 0.896253623098373 Functional Gain - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124104045 chr12:124104045 nonsynonymous SNV 0.991 1 21 hm5C_associated_SNPs_131451 0 0 1 0 2 DDX55 chr12:124103995 3'AG 124103995 Downstream 51bp
chr16 3117477 3117477 1 + G C rs539684284 3117477 + 3117457 3117497 41 GGGTCTCAGCGTGTGACACTGAGGACACTGTGGGACACCTG GGGTCTCAGCGTGTGACACTCAGGACACTGTGGGACACCTG Direct Gain 0 0.948113220531298 0 0.925330281257629 prediction 0.896226441062596 Functional Gain - IL32 ENSG00000008517 CDS Human protein_coding chr16:3117477 chr16:3117477 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_131454 0 0 1 0 1 IL32 chr16:3117378 3'AG 3117378 Downstream 100bp
chr2 37319112 37319112 1 + T C KIRC 37319112 + 37319092 37319132 41 AACGGAAAGCAGAGGAAAAATTGGAAAGCTACAGAAAAAAG AACGGAAAGCAGAGGAAAAACTGGAAAGCTACAGAAAAAAG Direct Gain 0 0.947898461168585 0 0.467208683490753 prediction 0.89579692233717 Functional Gain - GPATCH11 ENSG00000152133 CDS Human protein_coding chr2:37319112 chr2:37319112 synonymous SNV . 0 21 hm5C_associated_SNPs_131463 0 0 1 0 2 GPATCH11 chr2:37319059 3'AG 37319059 Downstream 54bp
chr2 37319112 37319112 1 + T C KIRC 37319112 + 37319092 37319132 41 AACGGAAAGCAGAGGAAAAATTGGAAAGCTACAGAAAAAAG AACGGAAAGCAGAGGAAAAACTGGAAAGCTACAGAAAAAAG Direct Gain 0 0.947898461168585 0 0.467208683490753 prediction 0.89579692233717 Functional Gain - GPATCH11 ENSG00000152133 CDS Human protein_coding chr2:37319112 chr2:37319112 synonymous SNV . 0 21 hm5C_associated_SNPs_131463 0 0 1 0 2 GPATCH11 chr2:37319179 5'GT 37319179 Upstream 68bp
chr14 24572815 24572815 1 + A C UCEC 24572815 + 24572795 24572835 41 GCTGAGCATGGAAGGGCGCAAGGGGGCCCAGCTGCCCCGTA GCTGAGCATGGAAGGGCGCACGGGGGCCCAGCTGCCCCGTA Direct Gain 0 0.947865567382286 0 0.892619848251343 prediction 0.895731134764572 Functional Gain - PCK2 ENSG00000100889 CDS Human protein_coding chr14:24572815 chr14:24572815 nonsynonymous SNV 0.963 0 21 hm5C_associated_SNPs_131467 0 0 0 0 1 PCK2 chr14:24572719 3'AG 24572719 Downstream 97bp
chr11 89028354 89028354 1 + A C STAD 89028354 + 89028334 89028374 41 ATTAAGTCCTATTTGGAACAAGCGAGTCGGATCTGGTCATG ATTAAGTCCTATTTGGAACACGCGAGTCGGATCTGGTCATG Direct Gain 0 0.947862120085209 0 0.576077342033386 prediction 0.895724240170418 Functional Gain - TYR ENSG00000077498 CDS Human protein_coding chr11:89028354 chr11:89028354 nonsynonymous SNV 0.957 5 21 hm5C_associated_SNPs_131468 0 0 0 0 1 TYR chr11:89028311 3'AG 89028311 Downstream 44bp
chr7 150773144 150773144 1 - C G LUAD 150773144 - 150773124 150773164 41 GCCCAGAGCAGGGCCAGGCAGAGCAGCTGCAGGGCCGTGAA GCCCAGAGCAGGGCCAGGCACAGCAGCTGCAGGGCCGTGAA Direct Gain 0 0.947861031132375 0 0.617579817771912 prediction 0.895722062264751 Functional Gain - SLC4A2 ENSG00000164889 CDS Human antisense chr7:150773144 chr7:150773144 synonymous SNV . 0 21 hm5C_associated_SNPs_131469 0 0 0 0 1 SLC4A2 chr7:150773083 5'GT 150773083 Upstream 62bp
chr14 51027013 51027013 1 + T C rs146613929 51027013 + 51026993 51027033 41 AACCGCAGGGACAGAAACAGTTGGGGTGAGTAGCAAATGAG AACCGCAGGGACAGAAACAGCTGGGGTGAGTAGCAAATGAG Direct Gain 0 0.947860790857648 0 0.490579038858414 prediction 0.895721581715296 Functional Gain - ATL1 ENSG00000198513 CDS Human protein_coding chr14:51027013 chr14:51027013 synonymous SNV . 0 21 hm5C_associated_SNPs_131471 0 0 0 0 1 ATL1 chr14:51027017 5'GT 51027017 Upstream 5bp
chr3 44283855 44283855 1 + A C UCEC 44283855 + 44283835 44283875 41 CGCGAGGCCTAGAAGCAGCAAAGGAGGCTGAACTCCCCTTG CGCGAGGCCTAGAAGCAGCACAGGAGGCTGAACTCCCCTTG Direct Gain 0 0.947832401006175 0 0.659207701683044 prediction 0.895664802012349 Functional Gain - TOPAZ1 ENSG00000173769 CDS Human protein_coding chr3:44283855 chr3:44283855 nonsynonymous SNV 0.047 1 21 hm5C_associated_SNPs_131473 0 0 0 0 1 TOPAZ1 chr3:44283891 5'GT 44283891 Upstream 37bp
chr12 48535133 48535133 1 + G C LUSC 48535133 + 48535113 48535153 41 GCTATGTTGGGGGCTGGACTGGCCAAGGTGGCTCTAAACTT GCTATGTTGGGGGCTGGACTCGCCAAGGTGGCTCTAAACTT Direct Gain 0 0.947812945936646 0 0.827290534973145 prediction 0.895625891873292 Functional Gain - PFKM ENSG00000152556 CDS Human protein_coding chr12:48535133 chr12:48535133 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131477 0 0 1 0 2 PFKM chr12:48535094 3'AG 48535094 Downstream 40bp
chr12 48535133 48535133 1 + G C LUSC 48535133 + 48535113 48535153 41 GCTATGTTGGGGGCTGGACTGGCCAAGGTGGCTCTAAACTT GCTATGTTGGGGGCTGGACTCGCCAAGGTGGCTCTAAACTT Direct Gain 0 0.947812945936646 0 0.827290534973145 prediction 0.895625891873292 Functional Gain - PFKM ENSG00000152556 CDS Human protein_coding chr12:48535133 chr12:48535133 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131477 0 0 1 0 2 PFKM chr12:48535164 5'GT 48535164 Upstream 32bp
chr19 49686092 49686092 1 + G C LUSC 49686092 + 49686072 49686112 41 CCTGACGTGGGGCATGTGCTGAGGATGCTGCTGGGGAAGAT CCTGACGTGGGGCATGTGCTCAGGATGCTGCTGGGGAAGAT Direct Gain 0 0.947738773515083 0 0.869439959526062 prediction 0.895477547030167 Functional Gain - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49686092 chr19:49686092 synonymous SNV . 0 21 hm5C_associated_SNPs_131484 0 0 0 0 1 TRPM4 chr19:49686124 5'GT 49686124 Upstream 33bp
chr3 43732495 43732495 1 + A C rs138400599 43732495 + 43732475 43732515 41 GGCGGCGGCTATGGCGGCGGAGGAGGAGGAGGTGGACTCTG GGCGGCGGCTATGGCGGCGGCGGAGGAGGAGGTGGACTCTG Direct Gain 0 0.947627404175184 0 0.949735045433044 prediction 0.895254808350367 Functional Gain - ABHD5 ENSG00000011198 CDS Human protein_coding chr3:43732495 chr3:43732495 nonsynonymous SNV 0.959 0 21 hm5C_associated_SNPs_131490 0 0 1 0 1 ABHD5 chr3:43732531 5'GT 43732531 Upstream 37bp
chr7 97361989 97361989 1 + T C LUSC 97361989 + 97361969 97362009 41 TCAGCTGTTTGCAGAAGAAATAGGAGCCAATGATGATCTGA TCAGCTGTTTGCAGAAGAAACAGGAGCCAATGATGATCTGA Direct Gain 0 0.947483224469234 0 0.797221899032593 prediction 0.894966448938467 Functional Gain - TAC1 ENSG00000006128 CDS Human protein_coding chr7:97361989 chr7:97361989 nonsynonymous SNV 0.982 1 21 hm5C_associated_SNPs_131505 0 0 0 0 2 TAC1 chr7:97361916 3'AG 97361916 Downstream 74bp
chr7 97361989 97361989 1 + T C LUSC 97361989 + 97361969 97362009 41 TCAGCTGTTTGCAGAAGAAATAGGAGCCAATGATGATCTGA TCAGCTGTTTGCAGAAGAAACAGGAGCCAATGATGATCTGA Direct Gain 0 0.947483224469234 0 0.797221899032593 prediction 0.894966448938467 Functional Gain - TAC1 ENSG00000006128 CDS Human protein_coding chr7:97361989 chr7:97361989 nonsynonymous SNV 0.982 1 21 hm5C_associated_SNPs_131505 0 0 0 0 2 TAC1 chr7:97362047 5'GT 97362047 Upstream 59bp
chr19 52817502 52817502 1 + T C SKCM 52817502 + 52817482 52817522 41 CTTTATACAAGGATGTGATGTTGGAGAACTACAGGAACCTG CTTTATACAAGGATGTGATGCTGGAGAACTACAGGAACCTG Direct Gain 0 0.947391889661245 0 0.510191440582275 prediction 0.89478377932249 Functional Gain - ZNF480 ENSG00000198464 CDS Human protein_coding chr19:52817502 chr19:52817502 synonymous SNV . 0 21 hm5C_associated_SNPs_131514 0 0 1 0 2 ZNF480 chr19:52817406 3'AG 52817406 Downstream 97bp
chr19 52817502 52817502 1 + T C SKCM 52817502 + 52817482 52817522 41 CTTTATACAAGGATGTGATGTTGGAGAACTACAGGAACCTG CTTTATACAAGGATGTGATGCTGGAGAACTACAGGAACCTG Direct Gain 0 0.947391889661245 0 0.510191440582275 prediction 0.89478377932249 Functional Gain - ZNF480 ENSG00000198464 CDS Human protein_coding chr19:52817502 chr19:52817502 synonymous SNV . 0 21 hm5C_associated_SNPs_131514 0 0 1 0 2 ZNF480 chr19:52817532 5'GT 52817532 Upstream 31bp
chr7 99722440 99722440 1 + G C KIRC 99722440 + 99722420 99722460 41 AGGAGGAGGAGGAGGAAGAGGAGGAAGAGGAAGGGGGAGAC AGGAGGAGGAGGAGGAAGAGCAGGAAGAGGAAGGGGGAGAC Direct Gain 0 0.947357283835339 0 0.850435137748718 prediction 0.894714567670678 Functional Gain - CNPY4 ENSG00000166997 CDS Human protein_coding chr7:99722440 chr7:99722440 nonsynonymous SNV 0.090 1 21 hm5C_associated_SNPs_131518 0 0 1 0 1 CNPY4 chr7:99722348 3'AG 99722348 Downstream 93bp
chr18 907685 907685 1 + G C BLCA 907685 + 907665 907705 41 AGGAAGAGGCGTACGGCGAGGACGGAAACCCGCTGCCAGAC AGGAAGAGGCGTACGGCGAGCACGGAAACCCGCTGCCAGAC Direct Gain 0 0.947347414544576 0 0.635655641555786 prediction 0.894694829089152 Functional Gain - ADCYAP1 ENSG00000141433 CDS Human protein_coding chr18:907685 chr18:907685 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_131520 0 0 0 0 1 ADCYAP1 chr18:907660 3'AG 907660 Downstream 26bp
chr11 9496117 9496117 1 + G C ESCA 9496117 + 9496097 9496137 41 CAGGGGACAGTTTGCGTCTAGAGGATGGTCAAGCAGTACAG CAGGGGACAGTTTGCGTCTACAGGATGGTCAAGCAGTACAG Direct Gain 0 0.947305036837618 0 0.351554065942764 prediction 0.894610073675235 Functional Gain - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9496117 chr11:9496117 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131523 0 0 1 0 3 ZNF143 chr11:9496097 3'AG 9496097 Downstream 21bp
chr11 9496117 9496117 1 + G C ESCA 9496117 + 9496097 9496137 41 CAGGGGACAGTTTGCGTCTAGAGGATGGTCAAGCAGTACAG CAGGGGACAGTTTGCGTCTACAGGATGGTCAAGCAGTACAG Direct Gain 0 0.947305036837618 0 0.351554065942764 prediction 0.894610073675235 Functional Gain - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9496117 chr11:9496117 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131523 0 0 1 0 3 ZNF143 chr11:9496100 3'AG 9496100 Downstream 18bp
chr11 9496117 9496117 1 + G C ESCA 9496117 + 9496097 9496137 41 CAGGGGACAGTTTGCGTCTAGAGGATGGTCAAGCAGTACAG CAGGGGACAGTTTGCGTCTACAGGATGGTCAAGCAGTACAG Direct Gain 0 0.947305036837618 0 0.351554065942764 prediction 0.894610073675235 Functional Gain - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9496117 chr11:9496117 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131523 0 0 1 0 3 ZNF143 chr11:9496180 5'GT 9496180 Upstream 64bp
chr3 50137474 50137474 1 + G C LUAD 50137474 + 50137454 50137494 41 GCGGATGTGAGGCTGATGAAGAGGAAAACAGGTGAGAGCTT GCGGATGTGAGGCTGATGAACAGGAAAACAGGTGAGAGCTT Direct Gain 0 0.947188053521288 0 0.905026614665985 prediction 0.894376107042576 Functional Gain - RBM5 ENSG00000003756 CDS Human protein_coding chr3:50137474 chr3:50137474 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_131537 0 0 1 0 1 RBM5 chr3:50137415 3'AG 50137415 Downstream 60bp
chr8 75615877 75615877 1 + T C rs77156590 75615877 + 75615857 75615897 41 TACTGGGAAAACAGGAAAATTAGGAGGAATGTTCTGGAGTG TACTGGGAAAACAGGAAAATCAGGAGGAATGTTCTGGAGTG Direct Gain 0 0.94715877532657 0 0.844851493835449 prediction 0.894317550653141 Functional Gain - MIR2052HG ENSG00000254349 CDS Human lincRNA chr8:75615877 chr8:75615877 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_131541 0 0 0 1 2 MIR2052HG chr8:75615841 3'AG 75615841 Downstream 37bp
chr8 75615877 75615877 1 + T C rs77156590 75615877 + 75615857 75615897 41 TACTGGGAAAACAGGAAAATTAGGAGGAATGTTCTGGAGTG TACTGGGAAAACAGGAAAATCAGGAGGAATGTTCTGGAGTG Direct Gain 0 0.94715877532657 0 0.844851493835449 prediction 0.894317550653141 Functional Gain - MIR2052HG ENSG00000254349 CDS Human lincRNA chr8:75615877 chr8:75615877 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_131541 0 0 0 1 2 MIR2052HG chr8:75615917 5'GT 75615917 Upstream 41bp
chrX 119292962 119292962 1 + G C BRCA 119292962 + 119292942 119292982 41 CGCTTACTGAAGAGGTCAAAGAGGAGGAAGAGGATGCACAG CGCTTACTGAAGAGGTCAAACAGGAGGAAGAGGATGCACAG Direct Gain 0 0.947109639315113 0 0.907819092273712 prediction 0.894219278630227 Functional Gain - RHOXF2;RHOXF2B ENSG00000131721 CDS Human protein_coding chrX:119292962 chrX:119292962 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_131544 0 0 0 0 1 RHOXF2;RHOXF2B chrX:119292921 3'AG 119292921 Downstream 42bp
chr9 136324153 136324153 1 + T C LIHC 136324153 + 136324133 136324173 41 ATGGGCAGCAGGTGCTCTACTGGGAGTCAGAGAGCAGCCAG ATGGGCAGCAGGTGCTCTACCGGGAGTCAGAGAGCAGCCAG Direct Gain 0 0.946972678842916 0 0.938822627067566 prediction 0.893945357685832 Functional Gain - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136324153 chr9:136324153 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_131559 0 0 1 0 1 ADAMTS13 chr9:136324096 3'AG 136324096 Downstream 58bp
chr20 62648154 62648154 1 + G C HNSC 62648154 + 62648134 62648174 41 CCGTGATTGGGATTGGGATTGAGGAGGAAGATCGGAAGCAT CCGTGATTGGGATTGGGATTCAGGAGGAAGATCGGAAGCAT Direct Gain 0 0.94694328876489 0 0.943089723587036 prediction 0.89388657752978 Functional Gain - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62648154 chr20:62648154 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_131562 0 0 1 0 1 PRPF6 chr20:62648076 3'AG 62648076 Downstream 79bp
chr2 32526479 32526479 1 + T C KIRC 32526479 + 32526459 32526499 41 TGGCCAAGTCCTTGGAGTTATAGGATATTCATTACTTCCTC TGGCCAAGTCCTTGGAGTTACAGGATATTCATTACTTCCTC Direct Gain 0 0.946901904223854 0 0.849129676818848 prediction 0.893803808447708 Functional Gain - YIPF4 ENSG00000119820 CDS Human protein_coding chr2:32526479 chr2:32526479 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_131570 0 0 1 0 2 YIPF4 chr2:32526451 3'AG 32526451 Downstream 29bp
chr2 32526479 32526479 1 + T C KIRC 32526479 + 32526459 32526499 41 TGGCCAAGTCCTTGGAGTTATAGGATATTCATTACTTCCTC TGGCCAAGTCCTTGGAGTTACAGGATATTCATTACTTCCTC Direct Gain 0 0.946901904223854 0 0.849129676818848 prediction 0.893803808447708 Functional Gain - YIPF4 ENSG00000119820 CDS Human protein_coding chr2:32526479 chr2:32526479 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_131570 0 0 1 0 2 YIPF4 chr2:32526564 5'GT 32526564 Upstream 86bp
chr18 59855215 59855215 1 + G C LUSC 59855215 + 59855195 59855235 41 CCTGGAGCAGCCGGCGTTGGGGGCGCTGGAGGTCGGGAACC CCTGGAGCAGCCGGCGTTGGCGGCGCTGGAGGTCGGGAACC Direct Gain 0 0.946900446640974 0 0.906451523303986 prediction 0.893800893281947 Functional Gain - KIAA1468 ENSG00000134444 CDS Human protein_coding chr18:59855215 chr18:59855215 synonymous SNV . 0 21 hm5C_associated_SNPs_131571 0 0 1 0 1 KIAA1468 chr18:59855264 5'GT 59855264 Upstream 50bp
chr19 55401110 55401110 1 + T C GBM 55401110 + 55401090 55401130 41 TGGCCATACTGGTTGAAAATTGGCACAGCCATACGGCACTG TGGCCATACTGGTTGAAAATCGGCACAGCCATACGGCACTG Direct Gain 0 0.946897366201241 0 0.789610624313354 prediction 0.893794732402481 Functional Gain - FCAR ENSG00000186431 CDS Human protein_coding chr19:55401110 chr19:55401110 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_131572 0 0 0 0 1 FCAR chr19:55401015 3'AG 55401015 Downstream 96bp
chr1 100731969 100731969 1 + T C SKCM 100731969 + 100731949 100731989 41 GGAGGTCGATGGCAGCATCATGGAAGGGGTGAGTACAGAGC GGAGGTCGATGGCAGCATCACGGAAGGGGTGAGTACAGAGC Direct Gain 0 0.946840521245048 0 0.493640065193176 prediction 0.893681042490096 Functional Gain - RTCA ENSG00000137996 CDS Human protein_coding chr1:100731969 chr1:100731969 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_131576 0 0 1 0 1 RTCA chr1:100731976 5'GT 100731976 Upstream 8bp
chrX 101805037 101805037 1 + G C HNSC 101805037 + 101805017 101805057 41 GAGGTGGGTAGGAGGTTAAGGGGGATCCTGAGCACTGGAGC GAGGTGGGTAGGAGGTTAAGCGGGATCCTGAGCACTGGAGC Direct Gain 0 0.946710913678106 0 0.96120274066925 prediction 0.893421827356211 Functional Gain - NXF4 ENSG00000196970 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:101805037 chrX:101805037 . . 0 21 hm5C_associated_SNPs_131585 0 0 0 0 1 NXF4 chrX:101805113 5'GT 101805113 Upstream 77bp
chr7 42972035 42972035 1 + G C READ 42972035 + 42972015 42972055 41 TTCGCCGTGGTCTGCGGCCCGGGGAGTGCTTCGAAACTACT TTCGCCGTGGTCTGCGGCCCCGGGAGTGCTTCGAAACTACT Direct Gain 0 0.946641963003064 0 0.794445037841797 prediction 0.893283926006128 Functional Gain - MRPL32 ENSG00000106591 CDS Human protein_coding chr7:42972035 chr7:42972035 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_131589 0 0 1 0 1 MRPL32 chr7:42972115 5'GT 42972115 Upstream 81bp
chrX 102632529 102632529 1 + G C LUSC 102632529 + 102632509 102632549 41 CCAGCCTGCAGGAAATCGACGGGGACAGGCTCGCCGACTTG CCAGCCTGCAGGAAATCGACCGGGACAGGCTCGCCGACTTG Direct Gain 0 0.946632985959995 0 0.864782929420471 prediction 0.893265971919991 Functional Gain - BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632529 chrX:102632529 nonsynonymous SNV 0.978 1 21 hm5C_associated_SNPs_131590 0 0 1 0 1 BEX3 chrX:102632438 3'AG 102632438 Downstream 92bp
chr12 27109540 27109540 1 + T C rs144362881 27109540 + 27109520 27109560 41 GCCACGGTCCACGTTAGTTATGGGAATCCAGCAAGAAAACA GCCACGGTCCACGTTAGTTACGGGAATCCAGCAAGAAAACA Direct Gain 0 0.946629420435236 0 0.488274544477463 prediction 0.893258840870471 Functional Gain - FGFR1OP2 ENSG00000111790 CDS Human protein_coding chr12:27109540 chr12:27109540 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_131591 0 0 1 0 2 FGFR1OP2 chr12:27109476 3'AG 27109476 Downstream 65bp
chr12 27109540 27109540 1 + T C rs144362881 27109540 + 27109520 27109560 41 GCCACGGTCCACGTTAGTTATGGGAATCCAGCAAGAAAACA GCCACGGTCCACGTTAGTTACGGGAATCCAGCAAGAAAACA Direct Gain 0 0.946629420435236 0 0.488274544477463 prediction 0.893258840870471 Functional Gain - FGFR1OP2 ENSG00000111790 CDS Human protein_coding chr12:27109540 chr12:27109540 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_131591 0 0 1 0 2 FGFR1OP2 chr12:27109593 5'GT 27109593 Upstream 54bp
chr18 8813046 8813046 1 + A C rs11874468 8813046 + 8813026 8813066 41 AGAGCAAGGGGGCCTTGAAGAAGGAGAGAGAGGTGCACCAG AGAGCAAGGGGGCCTTGAAGCAGGAGAGAGAGGTGCACCAG Direct Gain 0 0.946323872445482 0 0.97746741771698 prediction 0.892647744890964 Functional Gain - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8813046 chr18:8813046 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_131613 0 0 1 0 1 MTCL1 chr18:8812977 3'AG 8812977 Downstream 70bp
chr1 160325667 160325667 1 + G C rs116766004 160325667 + 160325647 160325687 41 CCACAGGCCCTGGCAGATGTGGCCACGGTGCTGGGACGTGC CCACAGGCCCTGGCAGATGTCGCCACGGTGCTGGGACGTGC Direct Gain 0 0.946281269523015 0 0.87562894821167 prediction 0.89256253904603 Functional Gain - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160325667 chr1:160325667 synonymous SNV . 0 21 hm5C_associated_SNPs_131615 0 0 1 0 2 NCSTN chr1:160325653 3'AG 160325653 Downstream 15bp
chr1 160325667 160325667 1 + G C rs116766004 160325667 + 160325647 160325687 41 CCACAGGCCCTGGCAGATGTGGCCACGGTGCTGGGACGTGC CCACAGGCCCTGGCAGATGTCGCCACGGTGCTGGGACGTGC Direct Gain 0 0.946281269523015 0 0.87562894821167 prediction 0.89256253904603 Functional Gain - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160325667 chr1:160325667 synonymous SNV . 0 21 hm5C_associated_SNPs_131615 0 0 1 0 2 NCSTN chr1:160325748 5'GT 160325748 Upstream 82bp
chr10 1061734 1061734 1 + T C HNSC 1061734 + 1061714 1061754 41 AGAAGATCCCGGAGCATCACTAGGAAAAGAAAGCGGGAAGA AGAAGATCCCGGAGCATCACCAGGAAAAGAAAGCGGGAAGA Direct Gain 0 0.946109509321359 0 0.899217903614044 prediction 0.892219018642719 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1061734 chr10:1061734 synonymous SNV . 0 21 hm5C_associated_SNPs_131627 0 0 1 1 1 GTPBP4 chr10:1061693 3'AG 1061693 Downstream 42bp
chr3 184001608 184001608 1 + G C CESC 184001608 + 184001588 184001628 41 CTGGATTACATGGAGGAACTGGGGATGCTGCTGGGTGGGCG CTGGATTACATGGAGGAACTCGGGATGCTGCTGGGTGGGCG Direct Gain 0 0.946036396818376 0 0.94338047504425 prediction 0.892072793636751 Functional Gain - ECE2 ENSG00000145194 CDS Human protein_coding chr3:184001608 chr3:184001608 synonymous SNV . 0 21 hm5C_associated_SNPs_131635 0 0 0 0 1 ECE2 chr3:184001573 3'AG 184001573 Downstream 36bp
chr14 91642340 91642340 1 + G C rs75931548 91642340 + 91642320 91642360 41 ATGCCATGGTGTGTCCCCCAGGGGAGGTTCCAGTGTTCTGG ATGCCATGGTGTGTCCCCCACGGGAGGTTCCAGTGTTCTGG Direct Gain 0 0.94602724271941 0 0.800633668899536 prediction 0.892054485438819 Functional Gain - C14orf159 ENSG00000133943 CDS Human protein_coding chr14:91642340 chr14:91642340 nonsynonymous SNV 0.266 0 21 hm5C_associated_SNPs_131636 0 0 1 0 2 C14orf159 chr14:91642278 3'AG 91642278 Downstream 63bp
chr14 91642340 91642340 1 + G C rs75931548 91642340 + 91642320 91642360 41 ATGCCATGGTGTGTCCCCCAGGGGAGGTTCCAGTGTTCTGG ATGCCATGGTGTGTCCCCCACGGGAGGTTCCAGTGTTCTGG Direct Gain 0 0.94602724271941 0 0.800633668899536 prediction 0.892054485438819 Functional Gain - C14orf159 ENSG00000133943 CDS Human protein_coding chr14:91642340 chr14:91642340 nonsynonymous SNV 0.266 0 21 hm5C_associated_SNPs_131636 0 0 1 0 2 C14orf159 chr14:91642400 5'GT 91642400 Upstream 61bp
chrX 16773177 16773177 1 + G C BLCA 16773177 + 16773157 16773197 41 AGCAGGCCGCAGGGAAGGAGGAGAAGAGCAATGGCAGAGAG AGCAGGCCGCAGGGAAGGAGCAGAAGAGCAATGGCAGAGAG Direct Gain 0 0.945947142224573 0 0.533132195472717 prediction 0.891894284449146 Functional Gain - SYAP1 ENSG00000169895 CDS Human protein_coding chrX:16773177 chrX:16773177 nonsynonymous SNV 0.555 0 21 hm5C_associated_SNPs_131643 0 0 1 0 1 SYAP1 chrX:16773216 5'GT 16773216 Upstream 40bp
chr5 76249946 76249946 1 + G C LUSC 76249946 + 76249926 76249966 41 CCTTCTTCATCAGCGAGCCCGAGGAGTTCATTACCATCCAC CCTTCTTCATCAGCGAGCCCCAGGAGTTCATTACCATCCAC Direct Gain 0 0.945913670501485 0 0.804888129234314 prediction 0.89182734100297 Functional Gain - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76249946 chr5:76249946 nonsynonymous SNV 0.987 0 21 hm5C_associated_SNPs_131646 0 0 0 0 1 CRHBP chr5:76250011 5'GT 76250011 Upstream 66bp
chr3 180685889 180685889 1 + G C CESC 180685889 + 180685869 180685909 41 AAACGGAATCTGAGCGTAAAGACGAGCTGAGTGATTGGTCA AAACGGAATCTGAGCGTAAACACGAGCTGAGTGATTGGTCA Direct Gain 0 0.945838819410042 0 0.477791875600815 prediction 0.891677638820085 Functional Gain - FXR1 ENSG00000114416 CDS Human protein_coding chr3:180685889 chr3:180685889 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_131651 0 0 1 0 1 FXR1 chr3:180685839 3'AG 180685839 Downstream 51bp
chr16 20442583 20442583 1 + G C CHOL 20442583 + 20442563 20442603 41 GTCCTGCCTCCTGGAGAAGAGGGGAATGTTGCCGTCCGTAT GTCCTGCCTCCTGGAGAAGACGGGAATGTTGCCGTCCGTAT Direct Gain 0 0.945834542696506 0 0.826837122440338 prediction 0.891669085393011 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20442583 chr16:20442583 nonsynonymous SNV 0.994 1 21 hm5C_associated_SNPs_131653 0 0 0 0 2 ACSM5 chr16:20442542 3'AG 20442542 Downstream 42bp
chr16 20442583 20442583 1 + G C CHOL 20442583 + 20442563 20442603 41 GTCCTGCCTCCTGGAGAAGAGGGGAATGTTGCCGTCCGTAT GTCCTGCCTCCTGGAGAAGACGGGAATGTTGCCGTCCGTAT Direct Gain 0 0.945834542696506 0 0.826837122440338 prediction 0.891669085393011 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20442583 chr16:20442583 nonsynonymous SNV 0.994 1 21 hm5C_associated_SNPs_131653 0 0 0 0 2 ACSM5 chr16:20442643 5'GT 20442643 Upstream 61bp
chr2 24964987 24964987 1 + T C COAD 24964987 + 24964967 24965007 41 CAGAGGCATGACAGGAAACATAGGAGGACAGTTTGGCACTG CAGAGGCATGACAGGAAACACAGGAGGACAGTTTGGCACTG Direct Gain 0 0.945834339017192 0 0.76566743850708 prediction 0.891668678034383 Functional Gain - NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24964987 chr2:24964987 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_131654 0 0 1 0 1 NCOA1 chr2:24965055 5'GT 24965055 Upstream 69bp
chr17 55079471 55079471 1 + T C rs12940187 55079471 + 55079451 55079491 41 TGTACAGTGACCCTAAATCTTTGGAAACATCTGCTTTTGTC TGTACAGTGACCCTAAATCTCTGGAAACATCTGCTTTTGTC Direct Gain 0 0.945808017722142 0 0.716887712478638 prediction 0.891616035444284 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55079471 chr17:55079471 synonymous SNV . 0 21 hm5C_associated_SNPs_131657 0 0 0 0 2 SCPEP1 chr17:55079379 3'AG 55079379 Downstream 93bp
chr17 55079471 55079471 1 + T C rs12940187 55079471 + 55079451 55079491 41 TGTACAGTGACCCTAAATCTTTGGAAACATCTGCTTTTGTC TGTACAGTGACCCTAAATCTCTGGAAACATCTGCTTTTGTC Direct Gain 0 0.945808017722142 0 0.716887712478638 prediction 0.891616035444284 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55079471 chr17:55079471 synonymous SNV . 0 21 hm5C_associated_SNPs_131657 0 0 0 0 2 SCPEP1 chr17:55079542 5'GT 55079542 Upstream 72bp
chr7 128846405 128846405 1 + T C LUAD 128846405 + 128846385 128846425 41 AATCGGCCTGGTGCTCATCGTGGGAGGCTACTTCCTCATCC AATCGGCCTGGTGCTCATCGCGGGAGGCTACTTCCTCATCC Direct Gain 0 0.945805595729274 0 0.901997804641724 prediction 0.891611191458548 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128846405 chr7:128846405 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_131658 0 0 1 0 1 SMO chr7:128846428 5'GT 128846428 Upstream 24bp
chrX 26158077 26158077 1 + T C HNSC 26158077 + 26158057 26158097 41 GCAGCCAGGGCTCATACTGCTGCCATGGCAAATGCACGTTC GCAGCCAGGGCTCATACTGCCGCCATGGCAAATGCACGTTC Direct Gain 0 0.945805354157376 0 0.37863028049469 prediction 0.891610708314752 Functional Gain - MAGEB18 ENSG00000176774 CDS Human protein_coding chrX:26158077 chrX:26158077 synonymous SNV . 0 21 hm5C_associated_SNPs_131659 0 0 0 0 1 MAGEB18 chrX:26158170 5'GT 26158170 Upstream 94bp
chr5 50685569 50685569 1 + G C CESC 50685569 + 50685549 50685589 41 GCGTGCGGACTGTGCTGAACGAGAAGCAGCTGCACACCTTG GCGTGCGGACTGTGCTGAACCAGAAGCAGCTGCACACCTTG Direct Gain 0 0.945696828964296 0 0.570117175579071 prediction 0.891393657928591 Functional Gain - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50685569 chr5:50685569 nonsynonymous SNV 0.999 5 21 hm5C_associated_SNPs_131669 0 0 0 0 1 ISL1 chr5:50685480 3'AG 50685480 Downstream 90bp
chr17 74075587 74075587 1 + T C rs372532252 74075587 + 74075567 74075607 41 AGCATCCAGATCCCGAACAATGGGAGTGCGCCCCTGCTCGT AGCATCCAGATCCCGAACAACGGGAGTGCGCCCCTGCTCGT Direct Gain 0 0.945694500838885 0 0.856732845306396 prediction 0.89138900167777 Functional Gain - ZACN ENSG00000186919 CDS Human protein_coding chr17:74075587 chr17:74075587 synonymous SNV . 0 21 hm5C_associated_SNPs_131670 0 0 0 0 2 ZACN chr17:74075520 3'AG 74075520 Downstream 68bp
chr17 74075587 74075587 1 + T C rs372532252 74075587 + 74075567 74075607 41 AGCATCCAGATCCCGAACAATGGGAGTGCGCCCCTGCTCGT AGCATCCAGATCCCGAACAACGGGAGTGCGCCCCTGCTCGT Direct Gain 0 0.945694500838885 0 0.856732845306396 prediction 0.89138900167777 Functional Gain - ZACN ENSG00000186919 CDS Human protein_coding chr17:74075587 chr17:74075587 synonymous SNV . 0 21 hm5C_associated_SNPs_131670 0 0 0 0 2 ZACN chr17:74075644 5'GT 74075644 Upstream 58bp
chr7 123509185 123509185 1 + G C BLCA 123509185 + 123509165 123509205 41 TTTCGGGTGCATGAATCCATGAGGATCTCCACCATGACATC TTTCGGGTGCATGAATCCATCAGGATCTCCACCATGACATC Direct Gain 0 0.945626678144909 0 0.799877047538757 prediction 0.891253356289818 Functional Gain - HYAL4 ENSG00000106302 CDS Human protein_coding chr7:123509185 chr7:123509185 nonsynonymous SNV 0.562 0 21 hm5C_associated_SNPs_131677 0 0 0 0 1 HYAL4 chr7:123509281 5'GT 123509281 Upstream 97bp
chr17 41133041 41133041 1 + G C HNSC 41133041 + 41133021 41133061 41 CCGGCGACCCCGCCAGCGATGAGGGCGATGGGCTGCCAGGG CCGGCGACCCCGCCAGCGATCAGGGCGATGGGCTGCCAGGG Direct Gain 0 0.945624990272052 0 0.966397166252136 prediction 0.891249980544104 Functional Gain - RUNDC1 ENSG00000198863 CDS Human protein_coding chr17:41133041 chr17:41133041 nonsynonymous SNV 0.110 0 21 hm5C_associated_SNPs_131678 0 0 1 0 1 RUNDC1 chr17:41133091 5'GT 41133091 Upstream 51bp
chr11 8118273 8118273 1 + G C LUSC 8118273 + 8118253 8118293 41 TTGACGAGGATGAGGAGGATGAGGAGGAGAATAGCTCCAGC TTGACGAGGATGAGGAGGATCAGGAGGAGAATAGCTCCAGC Direct Gain 0 0.945586081081336 0 0.930285930633545 prediction 0.891172162162672 Functional Gain - TUB ENSG00000166402 CDS Human protein_coding chr11:8118273 chr11:8118273 nonsynonymous SNV 0.992 3 21 hm5C_associated_SNPs_131685 0 0 1 0 1 TUB chr11:8118232 3'AG 8118232 Downstream 42bp
chr15 84255835 84255835 1 + T C COAD 84255835 + 84255815 84255855 41 GCTGCAGAGCAAGCTACAGATGCGGTAAGCACCTCCACGTT GCTGCAGAGCAAGCTACAGACGCGGTAAGCACCTCCACGTT Direct Gain 0 0.945501949134767 0 0.894851684570312 prediction 0.891003898269535 Functional Gain - SH3GL3 ENSG00000140600 CDS Human protein_coding chr15:84255835 chr15:84255835 nonsynonymous SNV 0.967 0 21 hm5C_associated_SNPs_131691 0 0 0 0 2 SH3GL3 chr15:84255739 3'AG 84255739 Downstream 97bp
chr15 84255835 84255835 1 + T C COAD 84255835 + 84255815 84255855 41 GCTGCAGAGCAAGCTACAGATGCGGTAAGCACCTCCACGTT GCTGCAGAGCAAGCTACAGACGCGGTAAGCACCTCCACGTT Direct Gain 0 0.945501949134767 0 0.894851684570312 prediction 0.891003898269535 Functional Gain - SH3GL3 ENSG00000140600 CDS Human protein_coding chr15:84255835 chr15:84255835 nonsynonymous SNV 0.967 0 21 hm5C_associated_SNPs_131691 0 0 0 0 2 SH3GL3 chr15:84255838 5'GT 84255838 Upstream 4bp
chr5 52779510 52779510 1 + G C rs11745088 52779510 + 52779490 52779530 41 TCCTAAAGGCAAGATGTAAAGAGCAGCCAGAACTGGAAGTC TCCTAAAGGCAAGATGTAAACAGCAGCCAGAACTGGAAGTC Direct Gain 0 0.945495791224433 0 0.728574872016907 prediction 0.890991582448865 Functional Gain - FST ENSG00000134363 CDS Human protein_coding chr5:52779510 chr5:52779510 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_131692 0 0 1 0 1 FST chr5:52779552 5'GT 52779552 Upstream 43bp
chr12 11083284 11083284 1 + A C CESC 11083284 + 11083264 11083304 41 GAGGAGACTCTGAGCAGTTCATAGATGAGGAGCGTCAGGGA GAGGAGACTCTGAGCAGTTCCTAGATGAGGAGCGTCAGGGA Direct Gain 0 0.945468743464571 0 0.917191743850708 prediction 0.890937486929143 Functional Gain - PRH2 ENSG00000134551 CDS Human protein_coding chr12:11083284 chr12:11083284 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_131696 0 0 0 0 1 PRH2 chr12:11083261 3'AG 11083261 Downstream 24bp
chr11 47603914 47603914 1 + T C STAD 47603914 + 47603894 47603934 41 TTCCTAGATCTGGGACATGTTTGGAGTCTTCTTTGCTAACC TTCCTAGATCTGGGACATGTCTGGAGTCTTCTTTGCTAACC Direct Gain 0 0.945429945916248 0 0.745696723461151 prediction 0.890859891832495 Functional Gain - NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47603914 chr11:47603914 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131701 0 0 1 0 1 NDUFS3 chr11:47603901 3'AG 47603901 Downstream 14bp
chr7 89749170 89749170 1 + T C LUAD 89749170 + 89749150 89749190 41 GGTTCCCCAGCAGAACCACTTTGGACTTCGGTAAGGAGAGG GGTTCCCCAGCAGAACCACTCTGGACTTCGGTAAGGAGAGG Direct Gain 0 0.945403842953796 0 0.588373184204102 prediction 0.890807685907591 Functional Gain - DPY19L2P4 ENSG00000235436 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:89749170 chr7:89749170 . . 0 21 hm5C_associated_SNPs_131704 0 0 0 0 1 DPY19L2P4 chr7:89749179 5'GT 89749179 Upstream 10bp
chr20 3725553 3725553 1 + T C rs140210757 3725553 + 3725533 3725573 41 CCCTGTGCCTCCGCAGGAAATGGGAGGGCGGAGACCCGGGC CCCTGTGCCTCCGCAGGAAACGGGAGGGCGGAGACCCGGGC Direct Gain 0 0.945385346491179 0 0.920848309993744 prediction 0.890770692982358 Functional Gain - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3725553 chr20:3725553 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131706 0 0 0 0 1 HSPA12B chr20:3725549 3'AG 3725549 Downstream 5bp
chr2 44079924 44079924 1 + T C OV 44079924 + 44079904 44079944 41 GTCTGGCACCCCCATCTACTTAGGGGCGGCCCAGCACATGG GTCTGGCACCCCCATCTACTCAGGGGCGGCCCAGCACATGG Direct Gain 0 0.945295347356993 0 0.90450644493103 prediction 0.890590694713987 Functional Gain - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44079924 chr2:44079924 nonsynonymous SNV 0.643 0 21 hm5C_associated_SNPs_131713 0 0 0 0 1 ABCG8 chr2:44080007 5'GT 44080007 Upstream 84bp
chr22 21989500 21989500 1 + G C LUAD 21989500 + 21989480 21989520 41 TCAGAGAAAACGCAAGGACAGAGGAGGCTCCCCCTCCATGT TCAGAGAAAACGCAAGGACACAGGAGGCTCCCCCTCCATGT Direct Gain 0 0.945257659522816 0 0.656407713890076 prediction 0.890515319045632 Functional Gain - CCDC116 ENSG00000161180 CDS Human protein_coding chr22:21989500 chr22:21989500 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_131717 0 0 0 0 1 CCDC116 chr22:21989555 5'GT 21989555 Upstream 56bp
chr2 11706687 11706687 1 + T C UCEC 11706687 + 11706667 11706707 41 CCCTGCGGGCTTTCTCCTCGTGGGGGTCAAGTCCCCCAGCC CCCTGCGGGCTTTCTCCTCGCGGGGGTCAAGTCCCCCAGCC Direct Gain 0 0.945240668719518 0 0.982111096382141 prediction 0.890481337439035 Functional Gain - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11706687 chr2:11706687 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_131719 0 0 0 0 1 GREB1 chr2:11706782 5'GT 11706782 Upstream 96bp
chr1 203452383 203452383 1 + G C UCEC 203452383 + 203452363 203452403 41 GGCCCAAGGCCAGCCAACAAGACGACCAAGACCCGGGACTG GGCCCAAGGCCAGCCAACAACACGACCAAGACCCGGGACTG Direct Gain 0 0.945208490102789 0 0.770909070968628 prediction 0.890416980205579 Functional Gain - PRELP ENSG00000188783 CDS Human protein_coding chr1:203452383 chr1:203452383 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_131723 0 0 0 0 1 PRELP chr1:203452297 3'AG 203452297 Downstream 87bp
chrX 129058863 129058863 1 + G C LUAD 129058863 + 129058843 129058883 41 GGAAGCAAAAAGCAAGTTCAGAGGGGACTATTCCCCAGGTC GGAAGCAAAAAGCAAGTTCACAGGGGACTATTCCCCAGGTC Direct Gain 0 0.945204651239605 0 0.845102310180664 prediction 0.890409302479209 Functional Gain - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129058863 chrX:129058863 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_131724 0 0 1 0 1 UTP14A chrX:129058771 3'AG 129058771 Downstream 93bp
chrX 149826404 149826404 1 + G C BRCA 149826404 + 149826384 149826424 41 ACTGCTCAGCTGACATCCTTGGCCATGCTGATGTTGGATAG ACTGCTCAGCTGACATCCTTCGCCATGCTGATGTTGGATAG Direct Gain 0 0.945196338667706 0 0.874644160270691 prediction 0.890392677335412 Functional Gain - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149826404 chrX:149826404 nonsynonymous SNV 0.998 5 21 hm5C_associated_SNPs_131725 0 0 0 0 1 MTM1 chrX:149826500 5'GT 149826500 Upstream 97bp
chr2 238419253 238419253 1 + G C CESC 238419253 + 238419233 238419273 41 ATTAAGAAGGAAAGCTCCAAGAGGGAGCTGCTTTCCGACAC ATTAAGAAGGAAAGCTCCAACAGGGAGCTGCTTTCCGACAC Direct Gain 0 0.945195117117248 0 0.932184994220734 prediction 0.890390234234496 Functional Gain - MLPH ENSG00000115648 CDS Human protein_coding chr2:238419253 chr2:238419253 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_131726 0 0 0 0 1 MLPH chr2:238419217 3'AG 238419217 Downstream 37bp
chr17 78389025 78389025 1 + G C CESC 78389025 + 78389005 78389045 41 AGGCGGCGGGAGGGCCGCCGGAGGAAACGCTGTCACTGTGG AGGCGGCGGGAGGGCCGCCGCAGGAAACGCTGTCACTGTGG Direct Gain 0 0.945156584403477 0 0.925487875938416 prediction 0.890313168806955 Functional Gain - ENDOV ENSG00000173818 CDS Human protein_coding chr17:78389025 chr17:78389025 nonsynonymous SNV 0.221 0 21 hm5C_associated_SNPs_131729 0 0 1 0 1 ENDOV chr17:78389050 5'GT 78389050 Upstream 26bp
chr12 110353227 110353227 1 + A C BLCA 110353227 + 110353207 110353247 41 GGTTGCAGAGCGCCGGCTGCAGGCATGGGAAGCAGACCAGC GGTTGCAGAGCGCCGGCTGCCGGCATGGGAAGCAGACCAGC Direct Gain 0 0.945146412311782 0 0.880703330039978 prediction 0.890292824623563 Functional Gain - TCHP ENSG00000139437 CDS Human protein_coding chr12:110353227 chr12:110353227 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_131730 0 0 1 0 1 TCHP chr12:110353208 3'AG 110353208 Downstream 20bp
chr17 685847 685847 1 + G C HNSC 685847 + 685827 685867 41 AACGAGAGAAACAACCGCTCGAGGAGTCCGCATCCCGCGCT AACGAGAGAAACAACCGCTCCAGGAGTCCGCATCCCGCGCT Direct Gain 0 0.945141579424813 0 0.806095480918884 prediction 0.890283158849627 Functional Gain - MRM3 ENSG00000171861 CDS Human protein_coding chr17:685847 chr17:685847 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_131731 0 0 0 0 1 MRM3 chr17:685932 5'GT 685932 Upstream 86bp
chr2 29404515 29404515 1 + A C UCEC 29404515 + 29404495 29404535 41 AGGGAGCGTGAAGCTGCACGAGGGGTCTCAGGTCCTGCTCA AGGGAGCGTGAAGCTGCACGCGGGGTCTCAGGTCCTGCTCA Direct Gain 0 0.94508818544895 0 0.960644960403442 prediction 0.890176370897899 Functional Gain - CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29404515 chr2:29404515 nonsynonymous SNV 0.985 0 21 hm5C_associated_SNPs_131736 0 0 0 0 1 CLIP4 chr2:29404438 3'AG 29404438 Downstream 78bp
chr8 142146830 142146830 1 + G C LUSC 142146830 + 142146810 142146850 41 CCCCCAGAGCGCCAGAGCCTGAGGATGTCGCCGTCCCGGGC CCCCCAGAGCGCCAGAGCCTCAGGATGTCGCCGTCCCGGGC Direct Gain 0 0.945080340645403 0 0.957437694072723 prediction 0.890160681290806 Functional Gain - DENND3 ENSG00000105339 CDS Human protein_coding chr8:142146830 chr8:142146830 nonsynonymous SNV 0.014 4 21 hm5C_associated_SNPs_131738 0 0 0 0 1 DENND3 chr8:142146890 5'GT 142146890 Upstream 61bp
chr1 28562926 28562926 1 + G C STAD 28562926 + 28562906 28562946 41 GGGAAGCCGGTGGGGCCTTCGGAAAGAGAGAGCAGGCTGAA GGGAAGCCGGTGGGGCCTTCCGAAAGAGAGAGCAGGCTGAA Direct Gain 0 0.945031911516433 0 0.777917444705963 prediction 0.890063823032867 Functional Gain - ATPIF1 ENSG00000130770 CDS Human protein_coding chr1:28562926 chr1:28562926 nonsynonymous SNV 0.999 5 21 hm5C_associated_SNPs_131741 0 0 1 0 2 ATPIF1 chr1:28562872 3'AG 28562872 Downstream 55bp
chr1 28562926 28562926 1 + G C STAD 28562926 + 28562906 28562946 41 GGGAAGCCGGTGGGGCCTTCGGAAAGAGAGAGCAGGCTGAA GGGAAGCCGGTGGGGCCTTCCGAAAGAGAGAGCAGGCTGAA Direct Gain 0 0.945031911516433 0 0.777917444705963 prediction 0.890063823032867 Functional Gain - ATPIF1 ENSG00000130770 CDS Human protein_coding chr1:28562926 chr1:28562926 nonsynonymous SNV 0.999 5 21 hm5C_associated_SNPs_131741 0 0 1 0 2 ATPIF1 chr1:28562963 5'GT 28562963 Upstream 38bp
chr6 80816606 80816606 1 + G C LUAD 80816606 + 80816586 80816626 41 ATCCGGAGCCCCGGGAGTACGGTGAGCCCTGGGACTGCCCA ATCCGGAGCCCCGGGAGTACCGTGAGCCCTGGGACTGCCCA Direct Gain 0 0.945024826314857 0 0.822452485561371 prediction 0.890049652629714 Functional Gain - BCKDHB ENSG00000083123 CDS Human protein_coding chr6:80816606 chr6:80816606 nonsynonymous SNV 0.071 3 21 hm5C_associated_SNPs_131744 0 0 0 0 1 BCKDHB chr6:80816606 5'GT 80816606 Upstream 1bp
chr10 96305680 96305680 1 + T C rs113154675 96305680 + 96305660 96305700 41 CCCGGGTGAGTGTCCAGGCATGCCAGCGGAACGGCCCGCGG CCCGGGTGAGTGTCCAGGCACGCCAGCGGAACGGCCCGCGG Direct Gain 0 0.945004704526039 0 0.48168408870697 prediction 0.890009409052078 Functional Gain - HELLS ENSG00000119969 CDS Human protein_coding chr10:96305680 chr10:96305680 nonsynonymous SNV 0.539 3 21 hm5C_associated_SNPs_131745 0 0 1 0 1 HELLS chr10:96305709 5'GT 96305709 Upstream 30bp
chr19 33864796 33864796 1 + G C rs545000719 33864796 + 33864776 33864816 41 TGGGGGCAGGCGGGCTAGAGGAGCAGGTAAGGAGGCTGCGG TGGGGGCAGGCGGGCTAGAGCAGCAGGTAAGGAGGCTGCGG Direct Gain 0 0.94492967032629 0 0.798227548599243 prediction 0.889859340652581 Functional Gain - CEBPG ENSG00000153879 UTR5 Human protein_coding chr19:33864796 chr19:33864796 . . 0 21 hm5C_associated_SNPs_131752 0 0 1 0 1 CEBPG chr19:33864801 5'GT 33864801 Upstream 6bp
chr1 212792760 212792760 1 + A C UCS 212792760 + 212792740 212792780 41 CTCAGATTGAGGAGCTCAAGAACGAGAAGCAGCATTTGATA CTCAGATTGAGGAGCTCAAGCACGAGAAGCAGCATTTGATA Direct Gain 0 0.944925678177673 0 0.520255744457245 prediction 0.889851356355347 Functional Gain - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212792760 chr1:212792760 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_131753 0 0 1 0 1 ATF3 chr1:212792700 3'AG 212792700 Downstream 61bp
chr21 37721642 37721642 1 + A C UCEC 37721642 + 37721622 37721662 41 GTGTTGGAGTGGTTGGAATTATAGAGTGTAATTTCCTTAAG GTGTTGGAGTGGTTGGAATTCTAGAGTGTAATTTCCTTAAG Direct Gain 0 0.944913957876194 0 0.84119701385498 prediction 0.889827915752389 Functional Gain - MORC3 ENSG00000159256 CDS Human protein_coding chr21:37721642 chr21:37721642 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_131754 0 0 1 0 2 MORC3 chr21:37721609 3'AG 37721609 Downstream 34bp
chr21 37721642 37721642 1 + A C UCEC 37721642 + 37721622 37721662 41 GTGTTGGAGTGGTTGGAATTATAGAGTGTAATTTCCTTAAG GTGTTGGAGTGGTTGGAATTCTAGAGTGTAATTTCCTTAAG Direct Gain 0 0.944913957876194 0 0.84119701385498 prediction 0.889827915752389 Functional Gain - MORC3 ENSG00000159256 CDS Human protein_coding chr21:37721642 chr21:37721642 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_131754 0 0 1 0 2 MORC3 chr21:37721706 5'GT 37721706 Upstream 65bp
chr2 187351184 187351184 1 + A C COAD 187351184 + 187351164 187351204 41 AAGAAGGAGAAGATTATCGAAGTGAGTACCCACCCCTCCCC AAGAAGGAGAAGATTATCGACGTGAGTACCCACCCCTCCCC Direct Gain 0 0.944849196395151 0 0.618784248828888 prediction 0.889698392790303 Functional Gain - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187351184 chr2:187351184 nonsynonymous SNV 0.907 1 21 hm5C_associated_SNPs_131758 0 0 1 0 1 ZC3H15 chr2:187351184 5'GT 187351184 Upstream 1bp
chr20 20007466 20007466 1 + T C OV 20007466 + 20007446 20007486 41 GCTCAGTAGCTAGGGAAGAATGGCACGGGCACGTCACAGCT GCTCAGTAGCTAGGGAAGAACGGCACGGGCACGTCACAGCT Direct Gain 0 0.944795453308807 0 0.88043087720871 prediction 0.889590906617614 Functional Gain - NAA20 ENSG00000173418 CDS Human protein_coding chr20:20007466 chr20:20007466 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_131760 0 0 1 0 2 NAA20 chr20:20007428 3'AG 20007428 Downstream 39bp
chr20 20007466 20007466 1 + T C OV 20007466 + 20007446 20007486 41 GCTCAGTAGCTAGGGAAGAATGGCACGGGCACGTCACAGCT GCTCAGTAGCTAGGGAAGAACGGCACGGGCACGTCACAGCT Direct Gain 0 0.944795453308807 0 0.88043087720871 prediction 0.889590906617614 Functional Gain - NAA20 ENSG00000173418 CDS Human protein_coding chr20:20007466 chr20:20007466 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_131760 0 0 1 0 2 NAA20 chr20:20007563 5'GT 20007563 Upstream 98bp
chr17 8192649 8192649 1 + T C rs138959557 8192649 + 8192629 8192669 41 AGTCTGTTCAGCCTCTCAGTTTGGAGAACCTGGCCCTGAGG AGTCTGTTCAGCCTCTCAGTCTGGAGAACCTGGCCCTGAGG Direct Gain 0 0.944780712044552 0 0.959593296051025 prediction 0.889561424089104 Functional Gain - RANGRF ENSG00000108961 CDS Human protein_coding chr17:8192649 chr17:8192649 synonymous SNV . 0 21 hm5C_associated_SNPs_131762 2 0 1 0 2 RANGRF chr17:8192576 3'AG 8192576 Downstream 74bp
chr17 8192649 8192649 1 + T C rs138959557 8192649 + 8192629 8192669 41 AGTCTGTTCAGCCTCTCAGTTTGGAGAACCTGGCCCTGAGG AGTCTGTTCAGCCTCTCAGTCTGGAGAACCTGGCCCTGAGG Direct Gain 0 0.944780712044552 0 0.959593296051025 prediction 0.889561424089104 Functional Gain - RANGRF ENSG00000108961 CDS Human protein_coding chr17:8192649 chr17:8192649 synonymous SNV . 0 21 hm5C_associated_SNPs_131762 2 0 1 0 2 RANGRF chr17:8192732 5'GT 8192732 Upstream 84bp
chr6 52947370 52947370 1 + T C LUSC 52947370 + 52947350 52947390 41 GTGACTTGGACCTCAGATCATTGGAGCAGTTGTCGCTGGTG GTGACTTGGACCTCAGATCACTGGAGCAGTTGTCGCTGGTG Direct Gain 0 0.944729746673434 0 0.598734557628632 prediction 0.889459493346869 Functional Gain - FBXO9 ENSG00000112146 CDS Human protein_coding chr6:52947370 chr6:52947370 synonymous SNV . 0 21 hm5C_associated_SNPs_131764 0 0 1 0 2 FBXO9 chr6:52947302 3'AG 52947302 Downstream 69bp
chr6 52947370 52947370 1 + T C LUSC 52947370 + 52947350 52947390 41 GTGACTTGGACCTCAGATCATTGGAGCAGTTGTCGCTGGTG GTGACTTGGACCTCAGATCACTGGAGCAGTTGTCGCTGGTG Direct Gain 0 0.944729746673434 0 0.598734557628632 prediction 0.889459493346869 Functional Gain - FBXO9 ENSG00000112146 CDS Human protein_coding chr6:52947370 chr6:52947370 synonymous SNV . 0 21 hm5C_associated_SNPs_131764 0 0 1 0 2 FBXO9 chr6:52947416 5'GT 52947416 Upstream 47bp
chr3 38349208 38349208 1 + T C rs9873449 38349208 + 38349188 38349228 41 ACGCCATCAGCAGCATTTCTTTGGGTGAGACTGGGCCTCAA ACGCCATCAGCAGCATTTCTCTGGGTGAGACTGGGCCTCAA Direct Gain 0 0.944706076411825 0 0.975933015346527 prediction 0.88941215282365 Functional Gain - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38349208 chr3:38349208 synonymous SNV . 0 21 hm5C_associated_SNPs_131766 0 0 0 0 1 SLC22A14 chr3:38349211 5'GT 38349211 Upstream 4bp
chr11 57310803 57310803 1 + G C BLCA 57310803 + 57310783 57310823 41 AGGCCAAACATGGTGCAAAAGAGGAGGCTGATGCAAAAGAG AGGCCAAACATGGTGCAAAACAGGAGGCTGATGCAAAAGAG Direct Gain 0 0.944609041597478 0 0.614451467990875 prediction 0.889218083194956 Functional Gain - SMTNL1 ENSG00000214872 CDS Human protein_coding chr11:57310803 chr11:57310803 nonsynonymous SNV 0.161 0 21 hm5C_associated_SNPs_131775 0 0 0 0 1 SMTNL1 chr11:57310847 5'GT 57310847 Upstream 45bp
chr7 905656 905656 1 + T C COAD 905656 + 905636 905676 41 ACGGCGCTGATGAGTCTGTTTGGGATCCCGCTGTGGTACTT ACGGCGCTGATGAGTCTGTTCGGGATCCCGCTGTGGTACTT Direct Gain 0 0.944598005543253 0 0.910581409931183 prediction 0.889196011086505 Functional Gain - SUN1 ENSG00000164828 CDS Human protein_coding chr7:905656 chr7:905656 synonymous SNV . 0 21 hm5C_associated_SNPs_131777 0 0 1 0 2 SUN1 chr7:905589 3'AG 905589 Downstream 68bp
chr7 905656 905656 1 + T C COAD 905656 + 905636 905676 41 ACGGCGCTGATGAGTCTGTTTGGGATCCCGCTGTGGTACTT ACGGCGCTGATGAGTCTGTTCGGGATCCCGCTGTGGTACTT Direct Gain 0 0.944598005543253 0 0.910581409931183 prediction 0.889196011086505 Functional Gain - SUN1 ENSG00000164828 CDS Human protein_coding chr7:905656 chr7:905656 synonymous SNV . 0 21 hm5C_associated_SNPs_131777 0 0 1 0 2 SUN1 chr7:905704 5'GT 905704 Upstream 49bp
chr3 183910898 183910898 1 + G C CESC 183910898 + 183910878 183910918 41 GTCCTTTTCCAGGGCGGCCTGAGGAGGAGTACCGTCACCAG GTCCTTTTCCAGGGCGGCCTCAGGAGGAGTACCGTCACCAG Direct Gain 0 0.944584774230964 0 0.947264909744263 prediction 0.889169548461928 Functional Gain - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183910898 chr3:183910898 nonsynonymous SNV 0.858 2 21 hm5C_associated_SNPs_131779 0 0 1 0 1 ABCF3 chr3:183910890 3'AG 183910890 Downstream 9bp
chr6 137187785 137187785 1 + T C UCEC 137187785 + 137187765 137187805 41 GTGATCAGACTCTGAGAATATGGGATGTGAAGGCAGCAGGA GTGATCAGACTCTGAGAATACGGGATGTGAAGGCAGCAGGA Direct Gain 0 0.94453994543238 0 0.787153363227844 prediction 0.88907989086476 Functional Gain - PEX7 ENSG00000112357 CDS Human protein_coding chr6:137187785 chr6:137187785 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_131786 0 0 1 1 2 PEX7 chr6:137187765 3'AG 137187765 Downstream 21bp
chr6 137187785 137187785 1 + T C UCEC 137187785 + 137187765 137187805 41 GTGATCAGACTCTGAGAATATGGGATGTGAAGGCAGCAGGA GTGATCAGACTCTGAGAATACGGGATGTGAAGGCAGCAGGA Direct Gain 0 0.94453994543238 0 0.787153363227844 prediction 0.88907989086476 Functional Gain - PEX7 ENSG00000112357 CDS Human protein_coding chr6:137187785 chr6:137187785 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_131786 0 0 1 1 2 PEX7 chr6:137187871 5'GT 137187871 Upstream 87bp
chr1 113243232 113243232 1 + G C rs551453724 113243232 + 113243212 113243252 41 TCCAAGGGACAGGAAGGCTGGGGGAGGGAGTTTACAACCCA TCCAAGGGACAGGAAGGCTGCGGGAGGGAGTTTACAACCCA Direct Gain 0 0.944459324970565 0 0.755423307418823 prediction 0.88891864994113 Functional Gain - MOV10 ENSG00000155363 UTR3 Human protein_coding chr1:113243232 chr1:113243232 . . 0 21 hm5C_associated_SNPs_131791 0 0 1 0 1 MOV10 chr1:113243164 3'AG 113243164 Downstream 69bp
chr22 50957092 50957092 1 + G C LUSC 50957092 + 50957072 50957112 41 TCCCAGACACCGGGAGGACTGAGGAGCAGCCAATGGAAGTT TCCCAGACACCGGGAGGACTCAGGAGCAGCCAATGGAAGTT Direct Gain 0 0.944406017935422 0 0.881131529808044 prediction 0.888812035870845 Functional Gain - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50957092 chr22:50957092 nonsynonymous SNV 0.936 2 21 hm5C_associated_SNPs_131794 0 0 1 0 2 NCAPH2 chr22:50957078 3'AG 50957078 Downstream 15bp
chr22 50957092 50957092 1 + G C LUSC 50957092 + 50957072 50957112 41 TCCCAGACACCGGGAGGACTGAGGAGCAGCCAATGGAAGTT TCCCAGACACCGGGAGGACTCAGGAGCAGCCAATGGAAGTT Direct Gain 0 0.944406017935422 0 0.881131529808044 prediction 0.888812035870845 Functional Gain - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50957092 chr22:50957092 nonsynonymous SNV 0.936 2 21 hm5C_associated_SNPs_131794 0 0 1 0 2 NCAPH2 chr22:50957161 5'GT 50957161 Upstream 70bp
chr11 63273900 63273900 1 + G C KIRP 63273900 + 63273880 63273920 41 GGGGGCAGGGCTCCTGGAACGAGGATCTACAGTTGGAGTTG GGGGGCAGGGCTCCTGGAACCAGGATCTACAGTTGGAGTTG Direct Gain 0 0.94435658150695 0 0.947580814361572 prediction 0.8887131630139 Functional Gain - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63273900 chr11:63273900 synonymous SNV . 0 21 hm5C_associated_SNPs_131801 0 0 0 0 1 LGALS12 chr11:63273999 5'GT 63273999 Upstream 100bp
chr11 32615458 32615458 1 + G C HNSC 32615458 + 32615438 32615478 41 AATTGCTCGGAAGTTACACAGAGGACAATGCTTCCCAGGCT AATTGCTCGGAAGTTACACACAGGACAATGCTTCCCAGGCT Direct Gain 0 0.944342764272631 0 0.952548623085022 prediction 0.888685528545261 Functional Gain - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32615458 chr11:32615458 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_131802 0 0 1 0 2 EIF3M chr11:32615412 3'AG 32615412 Downstream 47bp
chr11 32615458 32615458 1 + G C HNSC 32615458 + 32615438 32615478 41 AATTGCTCGGAAGTTACACAGAGGACAATGCTTCCCAGGCT AATTGCTCGGAAGTTACACACAGGACAATGCTTCCCAGGCT Direct Gain 0 0.944342764272631 0 0.952548623085022 prediction 0.888685528545261 Functional Gain - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32615458 chr11:32615458 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_131802 0 0 1 0 2 EIF3M chr11:32615495 5'GT 32615495 Upstream 38bp
chr12 21327544 21327544 1 + T C COAD 21327544 + 21327524 21327564 41 GATTGTATTTGTGAGTTACTTTGGATCCAAACTACATAGAC GATTGTATTTGTGAGTTACTCTGGATCCAAACTACATAGAC Direct Gain 0 0.944194372842807 0 0.876474797725677 prediction 0.888388745685614 Functional Gain - SLCO1B1 ENSG00000134538 CDS Human protein_coding chr12:21327544 chr12:21327544 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131815 0 0 0 0 2 SLCO1B1 chr12:21327511 3'AG 21327511 Downstream 34bp
chr12 21327544 21327544 1 + T C COAD 21327544 + 21327524 21327564 41 GATTGTATTTGTGAGTTACTTTGGATCCAAACTACATAGAC GATTGTATTTGTGAGTTACTCTGGATCCAAACTACATAGAC Direct Gain 0 0.944194372842807 0 0.876474797725677 prediction 0.888388745685614 Functional Gain - SLCO1B1 ENSG00000134538 CDS Human protein_coding chr12:21327544 chr12:21327544 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131815 0 0 0 0 2 SLCO1B1 chr12:21327643 5'GT 21327643 Upstream 100bp
chr8 86386583 86386583 1 + G C LGG 86386583 + 86386563 86386603 41 TTCACTGGAACACCAAATATGGGGATTTTGGGAAAGCTGTG TTCACTGGAACACCAAATATCGGGATTTTGGGAAAGCTGTG Direct Gain 0 0.944165047365076 0 0.860895276069641 prediction 0.888330094730152 Functional Gain - CA2 ENSG00000104267 CDS Human protein_coding chr8:86386583 chr8:86386583 nonsynonymous SNV 0.992 0 21 hm5C_associated_SNPs_131818 0 0 1 0 2 CA2 chr8:86386553 3'AG 86386553 Downstream 31bp
chr8 86386583 86386583 1 + G C LGG 86386583 + 86386563 86386603 41 TTCACTGGAACACCAAATATGGGGATTTTGGGAAAGCTGTG TTCACTGGAACACCAAATATCGGGATTTTGGGAAAGCTGTG Direct Gain 0 0.944165047365076 0 0.860895276069641 prediction 0.888330094730152 Functional Gain - CA2 ENSG00000104267 CDS Human protein_coding chr8:86386583 chr8:86386583 nonsynonymous SNV 0.992 0 21 hm5C_associated_SNPs_131818 0 0 1 0 2 CA2 chr8:86386645 5'GT 86386645 Upstream 63bp
chr1 227083161 227083161 1 + A C LUAD 227083161 + 227083141 227083181 41 TCCTGCTGCTTGCTGTGTTCAAGAAGGCGCTGCCCGCCCTC TCCTGCTGCTTGCTGTGTTCCAGAAGGCGCTGCCCGCCCTC Direct Gain 0 0.944147928922157 0 0.935306668281555 prediction 0.888295857844314 Functional Gain - PSEN2 ENSG00000143801 CDS Human protein_coding chr1:227083161 chr1:227083161 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131820 0 0 1 0 1 PSEN2 chr1:227083125 3'AG 227083125 Downstream 37bp
chrX 24089738 24089738 1 + G C LUSC 24089738 + 24089718 24089758 41 AATGGTGGGGCAAGTACTTGGTGCAGTCGGAGCTTTACCTG AATGGTGGGGCAAGTACTTGCTGCAGTCGGAGCTTTACCTG Direct Gain 0 0.944145855827213 0 0.868443965911865 prediction 0.888291711654426 Functional Gain - EIF2S3 ENSG00000130741 CDS Human protein_coding chrX:24089738 chrX:24089738 nonsynonymous SNV 0.995 2 21 hm5C_associated_SNPs_131821 0 0 1 0 1 EIF2S3 chrX:24089675 3'AG 24089675 Downstream 64bp
chr11 124847425 124847425 1 + G C KIRP 124847425 + 124847405 124847445 41 GGATAAATACAGGAATAAGAGGAGAGTTGCCCATTAAGGTC GGATAAATACAGGAATAAGACGAGAGTTGCCCATTAAGGTC Direct Gain 0 0.944126168209969 0 0.597593486309052 prediction 0.888252336419938 Functional Gain - CCDC15 ENSG00000149548 CDS Human protein_coding chr11:124847425 chr11:124847425 nonsynonymous SNV 0.005 1 21 hm5C_associated_SNPs_131824 0 0 0 0 2 CCDC15 chr11:124847374 3'AG 124847374 Downstream 52bp
chr11 124847425 124847425 1 + G C KIRP 124847425 + 124847405 124847445 41 GGATAAATACAGGAATAAGAGGAGAGTTGCCCATTAAGGTC GGATAAATACAGGAATAAGACGAGAGTTGCCCATTAAGGTC Direct Gain 0 0.944126168209969 0 0.597593486309052 prediction 0.888252336419938 Functional Gain - CCDC15 ENSG00000149548 CDS Human protein_coding chr11:124847425 chr11:124847425 nonsynonymous SNV 0.005 1 21 hm5C_associated_SNPs_131824 0 0 0 0 2 CCDC15 chr11:124847496 5'GT 124847496 Upstream 72bp
chr20 42088732 42088732 1 + T C BLCA 42088732 + 42088712 42088752 41 GCCCACAAGGAACGAACAAATGAGGGTGTAATTGAGTTTCG GCCCACAAGGAACGAACAAACGAGGGTGTAATTGAGTTTCG Direct Gain 0 0.944045040416597 0 0.807208955287933 prediction 0.888090080833195 Functional Gain - SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42088732 chr20:42088732 synonymous SNV . 0 21 hm5C_associated_SNPs_131830 0 0 1 0 1 SRSF6 chr20:42088673 3'AG 42088673 Downstream 60bp
chr15 75047231 75047231 1 + T C LIHC 75047231 + 75047211 75047251 41 AGTGAGAAGATGATGCTGTTTGGCATGGGCAAGCGCCGGTG AGTGAGAAGATGATGCTGTTCGGCATGGGCAAGCGCCGGTG Direct Gain 0 0.944043023828369 0 0.890005946159363 prediction 0.888086047656739 Functional Gain - CYP1A2 ENSG00000140505 CDS Human protein_coding chr15:75047231 chr15:75047231 synonymous SNV . 0 21 hm5C_associated_SNPs_131831 0 0 0 0 1 CYP1A2 chr15:75047132 3'AG 75047132 Downstream 100bp
chr2 3606535 3606535 1 + G C rs116404628 3606535 + 3606515 3606555 41 TGCACGTGGGTGTTTAACCAGGGGATATCCAGTGCCTCAAG TGCACGTGGGTGTTTAACCACGGGATATCCAGTGCCTCAAG Direct Gain 0 0.943876019807906 0 0.91813600063324 prediction 0.887752039615813 Functional Gain - RNASEH1-AS1 ENSG00000234171 ncRNA_exonic Human antisense chr2:3606535 chr2:3606535 . . 0 21 hm5C_associated_SNPs_131840 0 0 0 0 1 RNASEH1-AS1 chr2:3606588 5'GT 3606588 Upstream 54bp
chr16 31202390 31202390 1 + T C COAD 31202390 + 31202370 31202410 41 TTCCGAGGGGGCCGGGGTGGTGGGGACAGAGGTGGCTTTGG TTCCGAGGGGGCCGGGGTGGCGGGGACAGAGGTGGCTTTGG Direct Gain 0 0.943833751566135 0 0.959004640579224 prediction 0.887667503132269 Functional Gain - FUS ENSG00000089280 CDS Human protein_coding chr16:31202390 chr16:31202390 synonymous SNV . 0 21 hm5C_associated_SNPs_131841 0 0 1 0 1 FUS chr16:31202431 5'GT 31202431 Upstream 42bp
chr22 23437454 23437454 1 + T C rs146934131 23437454 + 23437434 23437474 41 GTGAAGGGCTGGATGCACAGTGGGAGCCGGAGGCGGGGGGC GTGAAGGGCTGGATGCACAGCGGGAGCCGGAGGCGGGGGGC Direct Gain 0 0.943710801498913 0 0.936924815177917 prediction 0.887421602997826 Functional Gain - GNAZ ENSG00000128266 UTR5 Human protein_coding chr22:23437454 chr22:23437454 . . 0 21 hm5C_associated_SNPs_131850 0 0 1 0 1 GNAZ chr22:23437434 3'AG 23437434 Downstream 21bp
chr9 110087185 110087185 1 + G C CESC 110087185 + 110087165 110087205 41 TCAAGAAGCTGGTGGTCAAGGAGGAGGAGGTGGAGGTGGCA TCAAGAAGCTGGTGGTCAAGCAGGAGGAGGTGGAGGTGGCA Direct Gain 0 0.943705541419269 0 0.841133236885071 prediction 0.887411082838539 Functional Gain - RAD23B ENSG00000119318 CDS Human protein_coding chr9:110087185 chr9:110087185 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_131851 0 0 1 0 1 RAD23B chr9:110087115 3'AG 110087115 Downstream 71bp
chr12 75889386 75889386 1 + G C BLCA 75889386 + 75889366 75889406 41 CCCAACTTGGCCATATAAGAGAGGAGCCACCTGCAGTGCCT CCCAACTTGGCCATATAAGACAGGAGCCACCTGCAGTGCCT Direct Gain 0 0.94370347218604 0 0.542474508285522 prediction 0.88740694437208 Functional Gain - GLIPR1 ENSG00000139278 CDS Human protein_coding chr12:75889386 chr12:75889386 nonsynonymous SNV 0.594 0 21 hm5C_associated_SNPs_131852 0 0 0 0 2 GLIPR1 chr12:75889357 3'AG 75889357 Downstream 30bp
chr12 75889386 75889386 1 + G C BLCA 75889386 + 75889366 75889406 41 CCCAACTTGGCCATATAAGAGAGGAGCCACCTGCAGTGCCT CCCAACTTGGCCATATAAGACAGGAGCCACCTGCAGTGCCT Direct Gain 0 0.94370347218604 0 0.542474508285522 prediction 0.88740694437208 Functional Gain - GLIPR1 ENSG00000139278 CDS Human protein_coding chr12:75889386 chr12:75889386 nonsynonymous SNV 0.594 0 21 hm5C_associated_SNPs_131852 0 0 0 0 2 GLIPR1 chr12:75889442 5'GT 75889442 Upstream 57bp
chr7 100087224 100087224 1 + T C UCEC 100087224 + 100087204 100087244 41 GGAGGTGGGCGCCGCGACATTTGGGGCAGGCTGGGCCCTGC GGAGGTGGGCGCCGCGACATCTGGGGCAGGCTGGGCCCTGC Direct Gain 0 0.943688414689708 0 0.933655500411987 prediction 0.887376829379417 Functional Gain - NYAP1 ENSG00000166924 CDS Human protein_coding chr7:100087224 chr7:100087224 nonsynonymous SNV 0.976 4 21 hm5C_associated_SNPs_131854 0 0 0 0 1 NYAP1 chr7:100087289 5'GT 100087289 Upstream 66bp
chr15 43677998 43677998 1 + G C BLCA 43677998 + 43677978 43678018 41 TCCTTGACTAGCGCCTGATTGAGGAAGAGAACATGCTGGCA TCCTTGACTAGCGCCTGATTCAGGAAGAGAACATGCTGGCA Direct Gain 0 0.943640543836724 0 0.924526572227478 prediction 0.887281087673449 Functional Gain - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43677998 chr15:43677998 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_131861 0 0 1 1 1 TUBGCP4 chr15:43677989 3'AG 43677989 Downstream 10bp
chr1 41006341 41006341 1 + T C rs74575870 41006341 + 41006321 41006361 41 TGTGCTGAGAGAACCCTGTATTGGGATGTGATGTTGGAGAA TGTGCTGAGAGAACCCTGTACTGGGATGTGATGTTGGAGAA Direct Gain 0 0.943628596107933 0 0.673929274082184 prediction 0.887257192215865 Functional Gain - ZNF684 ENSG00000117010 CDS Human protein_coding chr1:41006341 chr1:41006341 synonymous SNV . 0 21 hm5C_associated_SNPs_131862 0 0 1 0 2 ZNF684 chr1:41006258 3'AG 41006258 Downstream 84bp
chr1 41006341 41006341 1 + T C rs74575870 41006341 + 41006321 41006361 41 TGTGCTGAGAGAACCCTGTATTGGGATGTGATGTTGGAGAA TGTGCTGAGAGAACCCTGTACTGGGATGTGATGTTGGAGAA Direct Gain 0 0.943628596107933 0 0.673929274082184 prediction 0.887257192215865 Functional Gain - ZNF684 ENSG00000117010 CDS Human protein_coding chr1:41006341 chr1:41006341 synonymous SNV . 0 21 hm5C_associated_SNPs_131862 0 0 1 0 2 ZNF684 chr1:41006384 5'GT 41006384 Upstream 44bp
chr3 122121674 122121674 1 + G C BRCA 122121674 + 122121654 122121694 41 CTTACCAGAAGCTCTGATTTGAAGAGAATAAATGGATTTTG CTTACCAGAAGCTCTGATTTCAAGAGAATAAATGGATTTTG Direct Gain 0 0.943618236084136 0 0.740019798278809 prediction 0.887236472168272 Functional Gain - FAM162A ENSG00000114023 CDS Human protein_coding chr3:122121674 chr3:122121674 nonsynonymous SNV 0.907 0 21 hm5C_associated_SNPs_131864 0 0 1 0 2 FAM162A chr3:122121607 3'AG 122121607 Downstream 68bp
chr3 122121674 122121674 1 + G C BRCA 122121674 + 122121654 122121694 41 CTTACCAGAAGCTCTGATTTGAAGAGAATAAATGGATTTTG CTTACCAGAAGCTCTGATTTCAAGAGAATAAATGGATTTTG Direct Gain 0 0.943618236084136 0 0.740019798278809 prediction 0.887236472168272 Functional Gain - FAM162A ENSG00000114023 CDS Human protein_coding chr3:122121674 chr3:122121674 nonsynonymous SNV 0.907 0 21 hm5C_associated_SNPs_131864 0 0 1 0 2 FAM162A chr3:122121729 5'GT 122121729 Upstream 56bp
chr6 44221252 44221252 1 + G C HNSC 44221252 + 44221232 44221272 41 ATGAAGATGAAGTGGCAGCAGAGGAACCCAATGCTGCAGTT ATGAAGATGAAGTGGCAGCACAGGAACCCAATGCTGCAGTT Direct Gain 0 0.94359874662711 0 0.550794363021851 prediction 0.887197493254221 Functional Gain - HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44221252 chr6:44221252 nonsynonymous SNV 0.987 1 21 hm5C_associated_SNPs_131868 0 0 1 0 1 HSP90AB1 chr6:44221226 3'AG 44221226 Downstream 27bp
chr16 55806397 55806397 1 + T C UCEC 55806397 + 55806377 55806417 41 CCCAGGCTCTGTGACCATCTTTGGAGGGTCAGTGGGAGGAG CCCAGGCTCTGTGACCATCTCTGGAGGGTCAGTGGGAGGAG Direct Gain 0 0.943592120896013 0 0.87244725227356 prediction 0.887184241792027 Functional Gain - CES1P1 ENSG00000228695 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:55806397 chr16:55806397 . . 0 21 hm5C_associated_SNPs_131869 0 0 0 0 1 CES1P1 chr16:55806434 5'GT 55806434 Upstream 38bp
chr7 63529967 63529967 1 + A C STAD 63529967 + 63529947 63529987 41 TTGGAATGCGAGGAGACAGAAGACAGTAGCCAAACACCCAG TTGGAATGCGAGGAGACAGACGACAGTAGCCAAACACCCAG Direct Gain 0 0.943563718714612 0 0.151632845401764 prediction 0.887127437429224 Functional Gain - ZNF727 ENSG00000257482 CDS Human other chr7:63529967 chr7:63529967 nonsynonymous SNV 0.039 0 21 hm5C_associated_SNPs_131870 0 0 0 0 2 ZNF727 chr7:63529892 3'AG 63529892 Downstream 76bp
chr7 63529967 63529967 1 + A C STAD 63529967 + 63529947 63529987 41 TTGGAATGCGAGGAGACAGAAGACAGTAGCCAAACACCCAG TTGGAATGCGAGGAGACAGACGACAGTAGCCAAACACCCAG Direct Gain 0 0.943563718714612 0 0.151632845401764 prediction 0.887127437429224 Functional Gain - ZNF727 ENSG00000257482 CDS Human other chr7:63529967 chr7:63529967 nonsynonymous SNV 0.039 0 21 hm5C_associated_SNPs_131870 0 0 0 0 2 ZNF727 chr7:63529987 5'GT 63529987 Upstream 21bp
chr2 233404755 233404755 1 + T C UCEC 233404755 + 233404735 233404775 41 TCGCAGACCTGATGCAAAACTACGACCCCAACCTGCGGCCC TCGCAGACCTGATGCAAAACCACGACCCCAACCTGCGGCCC Direct Gain 0 0.943558571459645 0 0.361070066690445 prediction 0.887117142919289 Functional Gain - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233404755 chr2:233404755 nonsynonymous SNV 0.130 4 21 hm5C_associated_SNPs_131871 0 0 0 0 2 CHRNG chr2:233404702 3'AG 233404702 Downstream 54bp
chr2 233404755 233404755 1 + T C UCEC 233404755 + 233404735 233404775 41 TCGCAGACCTGATGCAAAACTACGACCCCAACCTGCGGCCC TCGCAGACCTGATGCAAAACCACGACCCCAACCTGCGGCCC Direct Gain 0 0.943558571459645 0 0.361070066690445 prediction 0.887117142919289 Functional Gain - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233404755 chr2:233404755 nonsynonymous SNV 0.130 4 21 hm5C_associated_SNPs_131871 0 0 0 0 2 CHRNG chr2:233404841 5'GT 233404841 Upstream 87bp
chr10 29776152 29776152 1 + G C HNSC 29776152 + 29776132 29776172 41 AGGAAGCAGCAGTGGGGAGAGAGCAGGAGGAAGCAGTCCCC AGGAAGCAGCAGTGGGGAGACAGCAGGAGGAAGCAGTCCCC Direct Gain 0 0.943496864521101 0 0.787646651268005 prediction 0.886993729042202 Functional Gain - SVIL ENSG00000197321 CDS Human antisense chr10:29776152 chr10:29776152 synonymous SNV . 0 21 hm5C_associated_SNPs_131874 0 0 0 0 1 SVIL-AS1 chr10:29776084 3'AG 29776084 Downstream 69bp
chr15 41020921 41020921 1 + T C SKCM 41020921 + 41020901 41020941 41 TCTCATAGGTATGGTCTCTCTGGCAGTGATGTCCTGGATAA TCTCATAGGTATGGTCTCTCCGGCAGTGATGTCCTGGATAA Direct Gain 0 0.943464474906032 0 0.847594857215881 prediction 0.886928949812064 Functional Gain - RAD51 ENSG00000051180 CDS Human protein_coding chr15:41020921 chr15:41020921 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_131879 0 0 1 0 1 RAD51 chr15:41020909 3'AG 41020909 Downstream 13bp
chr1 70877186 70877186 1 + G C rs529824425 70877186 + 70877166 70877206 41 TCCATGTGGGCCAGGATCCAGAGCAATGGACCTCCAGGGCT TCCATGTGGGCCAGGATCCACAGCAATGGACCTCCAGGGCT Direct Gain 0 0.943413359097377 0 0.553562641143799 prediction 0.886826718194754 Functional Gain - CTH ENSG00000116761 CDS Human protein_coding chr1:70877186 chr1:70877186 nonsynonymous SNV 0.174 2 21 hm5C_associated_SNPs_131883 0 0 1 1 1 CTH chr1:70877266 5'GT 70877266 Upstream 81bp
chr9 70993248 70993248 1 + T C UCEC 70993248 + 70993228 70993268 41 TGGAGGACCAGGGGGAGAGTTTGGAGTGAAGTTTAATGTTG TGGAGGACCAGGGGGAGAGTCTGGAGTGAAGTTTAATGTTG Direct Gain 0 0.943346720549613 0 0.859074473381042 prediction 0.886693441099226 Functional Gain - PGM5 ENSG00000154330 CDS Human protein_coding chr9:70993248 chr9:70993248 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_131888 0 0 0 0 1 PGM5 chr9:70993277 5'GT 70993277 Upstream 30bp
chr5 153056653 153056653 1 + G C LUSC 153056653 + 153056633 153056673 41 TATCTCGCCGGGGGAATGCTGGGGATTGTCTGGCTAACCCA TATCTCGCCGGGGGAATGCTCGGGATTGTCTGGCTAACCCA Direct Gain 0 0.94331956627826 0 0.949361205101013 prediction 0.88663913255652 Functional Gain - GRIA1 ENSG00000155511 CDS Human protein_coding chr5:153056653 chr5:153056653 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131889 0 0 0 0 2 GRIA1 chr5:153056554 3'AG 153056554 Downstream 100bp
chr5 153056653 153056653 1 + G C LUSC 153056653 + 153056633 153056673 41 TATCTCGCCGGGGGAATGCTGGGGATTGTCTGGCTAACCCA TATCTCGCCGGGGGAATGCTCGGGATTGTCTGGCTAACCCA Direct Gain 0 0.94331956627826 0 0.949361205101013 prediction 0.88663913255652 Functional Gain - GRIA1 ENSG00000155511 CDS Human protein_coding chr5:153056653 chr5:153056653 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131889 0 0 0 0 2 GRIA1 chr5:153056721 5'GT 153056721 Upstream 69bp
chr12 124171441 124171441 1 + G C BLCA 124171441 + 124171421 124171461 41 CTGCTTCACCGGCGTGTTTGGAGGAGACGTCAATCCTCCTT CTGCTTCACCGGCGTGTTTGCAGGAGACGTCAATCCTCCTT Direct Gain 0 0.943243199455102 0 0.913443148136139 prediction 0.886486398910204 Functional Gain - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124171441 chr12:124171441 nonsynonymous SNV 0.751 4 21 hm5C_associated_SNPs_131894 0 0 1 0 1 TCTN2 chr12:124171383 3'AG 124171383 Downstream 59bp
chr1 111781398 111781398 1 + T C COAD 111781398 + 111781378 111781418 41 GCTGTGGGGTACTGGATACATAAGGGAATGCCATCAGAGAA GCTGTGGGGTACTGGATACACAAGGGAATGCCATCAGAGAA Direct Gain 0 0.943164916391611 0 0.769300580024719 prediction 0.886329832783223 Functional Gain - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111781398 chr1:111781398 synonymous SNV . 0 21 hm5C_associated_SNPs_131898 0 0 0 0 1 CHI3L2 chr1:111781372 3'AG 111781372 Downstream 27bp
chr8 145730439 145730439 1 + T C STAD 145730439 + 145730419 145730459 41 GAGGACGTGGCGCGGTACATTGAGAGGCGTGACGGAGGCAT GAGGACGTGGCGCGGTACATCGAGAGGCGTGACGGAGGCAT Direct Gain 0 0.943158958788532 0 0.924784481525421 prediction 0.886317917577064 Functional Gain - GPT ENSG00000167701 CDS Human protein_coding chr8:145730439 chr8:145730439 synonymous SNV . 0 21 hm5C_associated_SNPs_131899 0 0 0 0 2 GPT chr8:145730381 3'AG 145730381 Downstream 59bp
chr8 145730439 145730439 1 + T C STAD 145730439 + 145730419 145730459 41 GAGGACGTGGCGCGGTACATTGAGAGGCGTGACGGAGGCAT GAGGACGTGGCGCGGTACATCGAGAGGCGTGACGGAGGCAT Direct Gain 0 0.943158958788532 0 0.924784481525421 prediction 0.886317917577064 Functional Gain - GPT ENSG00000167701 CDS Human protein_coding chr8:145730439 chr8:145730439 synonymous SNV . 0 21 hm5C_associated_SNPs_131899 0 0 0 0 2 GPT chr8:145730514 5'GT 145730514 Upstream 76bp
chr2 47601172 47601172 1 + A C LUAD 47601172 + 47601152 47601192 41 CACTGAAATAACCTGCTCTGAGCGAGTGAGAACCTAGTGAG CACTGAAATAACCTGCTCTGCGCGAGTGAGAACCTAGTGAG Direct Gain 0 0.943092024558509 0 0.742414951324463 prediction 0.886184049117019 Functional Gain - EPCAM ENSG00000119888 CDS Human protein_coding chr2:47601172 chr2:47601172 nonsynonymous SNV 0.897 3 21 hm5C_associated_SNPs_131908 0 0 1 0 1 EPCAM chr2:47601187 5'GT 47601187 Upstream 16bp
chr12 94072813 94072813 1 + A C UCEC 94072813 + 94072793 94072833 41 GGTCAGGGAGAAGCTGAAGAAGGCAAGGGAAGAGGCCATGA GGTCAGGGAGAAGCTGAAGACGGCAAGGGAAGAGGCCATGA Direct Gain 0 0.943003626218794 0 0.475695937871933 prediction 0.886007252437588 Functional Gain - CRADD ENSG00000169372 CDS Human protein_coding chr12:94072813 chr12:94072813 nonsynonymous SNV 0.974 0 21 hm5C_associated_SNPs_131917 0 0 1 0 1 CRADD chr12:94072848 5'GT 94072848 Upstream 36bp
chr2 74687380 74687380 1 + G C HNSC 74687380 + 74687360 74687400 41 CCTTCAAGCCCCCAGCCTACGAGGATGTGGTTCACCGCCCA CCTTCAAGCCCCCAGCCTACCAGGATGTGGTTCACCGCCCA Direct Gain 0 0.942990968323736 0 0.482103794813156 prediction 0.885981936647473 Functional Gain - WBP1 ENSG00000239779 CDS Human protein_coding chr2:74687380 chr2:74687380 nonsynonymous SNV 0.983 3 21 hm5C_associated_SNPs_131919 0 0 1 0 1 WBP1 chr2:74687348 3'AG 74687348 Downstream 33bp
chrX 102612632 102612632 1 + T C rs755806558 102612632 + 102612612 102612652 41 GATGAAATCCTGTCAAAAAATGGAAGGAAAACCAGAAAATG GATGAAATCCTGTCAAAAAACGGAAGGAAAACCAGAAAATG Direct Gain 0 0.9429689068321 0 0.736042618751526 prediction 0.8859378136642 Functional Gain - TCEAL9 ENSG00000185222 CDS Human protein_coding chrX:102612632 chrX:102612632 nonsynonymous SNV 0.994 0 21 hm5C_associated_SNPs_131923 0 0 1 0 2 TCEAL9 chrX:102612543 3'AG 102612543 Downstream 90bp
chrX 102612632 102612632 1 + T C rs755806558 102612632 + 102612612 102612652 41 GATGAAATCCTGTCAAAAAATGGAAGGAAAACCAGAAAATG GATGAAATCCTGTCAAAAAACGGAAGGAAAACCAGAAAATG Direct Gain 0 0.9429689068321 0 0.736042618751526 prediction 0.8859378136642 Functional Gain - TCEAL9 ENSG00000185222 CDS Human protein_coding chrX:102612632 chrX:102612632 nonsynonymous SNV 0.994 0 21 hm5C_associated_SNPs_131923 0 0 1 0 2 TCEAL9 chrX:102612546 3'AG 102612546 Downstream 87bp
chr8 143782019 143782019 1 + A C COAD 143782019 + 143781999 143782039 41 CGCCAACCTGACTGCGAGACAACGAGATCCAGAGGACTCCC CGCCAACCTGACTGCGAGACCACGAGATCCAGAGGACTCCC Direct Gain 0 0.94296474123334 0 0.40545243024826 prediction 0.88592948246668 Functional Gain - LY6K ENSG00000160886 CDS Human protein_coding chr8:143782019 chr8:143782019 nonsynonymous SNV 0.190 1 21 hm5C_associated_SNPs_131924 0 0 1 0 1 LY6K chr8:143782048 5'GT 143782048 Upstream 30bp
chrX 48759733 48759733 1 + G C LUAD 48759733 + 48759713 48759753 41 GACAAGGCAGACCGGGAAGAGGGCAAAGAACGGCGCCACCA GACAAGGCAGACCGGGAAGACGGCAAAGAACGGCGCCACCA Direct Gain 0 0.942914930725195 0 0.703946173191071 prediction 0.885829861450391 Functional Gain - PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759733 chrX:48759733 nonsynonymous SNV 0.997 0 21 hm5C_associated_SNPs_131926 0 0 1 0 1 PQBP1 chrX:48759719 3'AG 48759719 Downstream 15bp
chr3 100000628 100000628 1 + T C UCEC 100000628 + 100000608 100000648 41 AAGGTGATAGTTTGGCATCATGGGATGGTATTTTAGACTTG AAGGTGATAGTTTGGCATCACGGGATGGTATTTTAGACTTG Direct Gain 0 0.942911467008941 0 0.757193565368652 prediction 0.885822934017881 Functional Gain - TBC1D23 ENSG00000036054 CDS Human protein_coding chr3:100000628 chr3:100000628 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131927 0 0 1 0 2 TBC1D23 chr3:100000586 3'AG 100000586 Downstream 43bp
chr3 100000628 100000628 1 + T C UCEC 100000628 + 100000608 100000648 41 AAGGTGATAGTTTGGCATCATGGGATGGTATTTTAGACTTG AAGGTGATAGTTTGGCATCACGGGATGGTATTTTAGACTTG Direct Gain 0 0.942911467008941 0 0.757193565368652 prediction 0.885822934017881 Functional Gain - TBC1D23 ENSG00000036054 CDS Human protein_coding chr3:100000628 chr3:100000628 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131927 0 0 1 0 2 TBC1D23 chr3:100000691 5'GT 100000691 Upstream 64bp
chr3 138327951 138327951 1 + T C rs61699523 138327951 + 138327931 138327971 41 GCGGCGGCGGCGGGCGGTGTTTGCGCGGTCGGTGAGACCCG GCGGCGGCGGCGGGCGGTGTCTGCGCGGTCGGTGAGACCCG Direct Gain 0 0.942895717202091 0 0.84740948677063 prediction 0.885791434404181 Functional Gain - FAIM ENSG00000158234 UTR5 Human protein_coding chr3:138327951 chr3:138327951 . . 0 21 hm5C_associated_SNPs_131930 0 0 0 0 1 FAIM chr3:138327988 5'GT 138327988 Upstream 38bp
chr1 47157585 47157585 1 + A C COAD 47157585 + 47157565 47157605 41 AGCAAGATGGACGCTGTTTAAAGTATTGCCAATGGAAGCTA AGCAAGATGGACGCTGTTTACAGTATTGCCAATGGAAGCTA Direct Gain 0 0.942818005290739 0 0.581330299377441 prediction 0.885636010581477 Functional Gain - EFCAB14 ENSG00000159658 CDS Human protein_coding chr1:47157585 chr1:47157585 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_131934 0 0 0 0 1 EFCAB14 chr1:47157546 3'AG 47157546 Downstream 40bp
chr19 36257761 36257761 1 + T C COAD 36257761 + 36257741 36257781 41 GGCCAGAGGATGACATTCTGTACCAGTGGCGGCAGCGGCGG GGCCAGAGGATGACATTCTGCACCAGTGGCGGCAGCGGCGG Direct Gain 0 0.942774067365929 0 0.190090209245682 prediction 0.885548134731859 Functional Gain - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36257761 chr19:36257761 nonsynonymous SNV 0.984 3 21 hm5C_associated_SNPs_131941 0 0 1 0 2 PROSER3 chr19:36257669 3'AG 36257669 Downstream 93bp
chr19 36257761 36257761 1 + T C COAD 36257761 + 36257741 36257781 41 GGCCAGAGGATGACATTCTGTACCAGTGGCGGCAGCGGCGG GGCCAGAGGATGACATTCTGCACCAGTGGCGGCAGCGGCGG Direct Gain 0 0.942774067365929 0 0.190090209245682 prediction 0.885548134731859 Functional Gain - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36257761 chr19:36257761 nonsynonymous SNV 0.984 3 21 hm5C_associated_SNPs_131941 0 0 1 0 2 PROSER3 chr19:36257856 5'GT 36257856 Upstream 96bp
chrX 134483075 134483075 1 + T C UCEC 134483075 + 134483055 134483095 41 CTTGGAAGAACTGGCACCAGTGGGAACGGCACACATACCAC CTTGGAAGAACTGGCACCAGCGGGAACGGCACACATACCAC Direct Gain 0 0.942736192054847 0 0.951131701469421 prediction 0.885472384109694 Functional Gain - ZNF449 ENSG00000173275 CDS Human protein_coding chrX:134483075 chrX:134483075 nonsynonymous SNV 0.992 0 21 hm5C_associated_SNPs_131944 0 0 1 0 1 ZNF449 chrX:134483035 3'AG 134483035 Downstream 41bp
chr7 107334868 107334868 1 + T C BRCA 107334868 + 107334848 107334888 41 GTTGCTGGCATCATCTCTGCTGCGATTGTGATGATCGCCAT GTTGCTGGCATCATCTCTGCCGCGATTGTGATGATCGCCAT Direct Gain 0 0.942679783318895 0 0.909505844116211 prediction 0.885359566637791 Functional Gain - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107334868 chr7:107334868 synonymous SNV . 0 21 hm5C_associated_SNPs_131950 0 0 0 0 2 SLC26A4 chr7:107334848 3'AG 107334848 Downstream 21bp
chr7 107334868 107334868 1 + T C BRCA 107334868 + 107334848 107334888 41 GTTGCTGGCATCATCTCTGCTGCGATTGTGATGATCGCCAT GTTGCTGGCATCATCTCTGCCGCGATTGTGATGATCGCCAT Direct Gain 0 0.942679783318895 0 0.909505844116211 prediction 0.885359566637791 Functional Gain - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107334868 chr7:107334868 synonymous SNV . 0 21 hm5C_associated_SNPs_131950 0 0 0 0 2 SLC26A4 chr7:107334925 5'GT 107334925 Upstream 58bp
chr20 2635071 2635071 1 + G C BLCA 2635071 + 2635051 2635091 41 TCCCCTGAGGGGTTGTTCATGAGGACCTCCGCCTGCTCTTG TCCCCTGAGGGGTTGTTCATCAGGACCTCCGCCTGCTCTTG Direct Gain 0 0.942596975013824 0 0.782408356666565 prediction 0.885193950027649 Functional Gain - NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635071 chr20:2635071 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_131959 0 0 1 0 1 NOP56 chr20:2635060 3'AG 2635060 Downstream 12bp
chr2 242089049 242089049 1 + A C rs550766380 242089049 + 242089029 242089069 41 CCCCTACGGCGCTTCGGAGGAGCCAAAGGAATAATGGGCGC CCCCTACGGCGCTTCGGAGGCGCCAAAGGAATAATGGGCGC Direct Gain 0 0.942483526360754 0 0.734128654003143 prediction 0.884967052721509 Functional Gain - PASK;PPP1R7 ENSG00000115685;ENSG00000115687 UTR5 Human protein_coding chr2:242089049 chr2:242089049 . . 0 21 hm5C_associated_SNPs_131967 0 0 0 0 1 PPP1R7 chr2:242089123 5'GT 242089123 Upstream 75bp
chr7 128138132 128138132 1 + T C UCEC 128138132 + 128138112 128138152 41 CTGAGCAGGCTTCTGAAACCTGGGGGGATGGTACTTCTGCG CTGAGCAGGCTTCTGAAACCCGGGGGGATGGTACTTCTGCG Direct Gain 0 0.94234045543731 0 0.928220748901367 prediction 0.88468091087462 Functional Gain - METTL2B ENSG00000165055 CDS Human protein_coding chr7:128138132 chr7:128138132 synonymous SNV . 0 21 hm5C_associated_SNPs_131977 0 0 1 0 2 METTL2B chr7:128138090 3'AG 128138090 Downstream 43bp
chr7 128138132 128138132 1 + T C UCEC 128138132 + 128138112 128138152 41 CTGAGCAGGCTTCTGAAACCTGGGGGGATGGTACTTCTGCG CTGAGCAGGCTTCTGAAACCCGGGGGGATGGTACTTCTGCG Direct Gain 0 0.94234045543731 0 0.928220748901367 prediction 0.88468091087462 Functional Gain - METTL2B ENSG00000165055 CDS Human protein_coding chr7:128138132 chr7:128138132 synonymous SNV . 0 21 hm5C_associated_SNPs_131977 0 0 1 0 2 METTL2B chr7:128138196 5'GT 128138196 Upstream 65bp
chr12 48535153 48535153 1 + T C rs554664722 48535153 + 48535133 48535173 41 GGCCAAGGTGGCTCTAAACTTGGGACTAAAAGGTAAGTAGC GGCCAAGGTGGCTCTAAACTCGGGACTAAAAGGTAAGTAGC Direct Gain 0 0.942314212527739 0 0.94495415687561 prediction 0.884628425055479 Functional Gain - PFKM ENSG00000152556 CDS Human protein_coding chr12:48535153 chr12:48535153 synonymous SNV . 0 21 hm5C_associated_SNPs_131983 1 0 1 0 2 PFKM chr12:48535094 3'AG 48535094 Downstream 60bp
chr12 48535153 48535153 1 + T C rs554664722 48535153 + 48535133 48535173 41 GGCCAAGGTGGCTCTAAACTTGGGACTAAAAGGTAAGTAGC GGCCAAGGTGGCTCTAAACTCGGGACTAAAAGGTAAGTAGC Direct Gain 0 0.942314212527739 0 0.94495415687561 prediction 0.884628425055479 Functional Gain - PFKM ENSG00000152556 CDS Human protein_coding chr12:48535153 chr12:48535153 synonymous SNV . 0 21 hm5C_associated_SNPs_131983 1 0 1 0 2 PFKM chr12:48535164 5'GT 48535164 Upstream 12bp
chr6 13615767 13615767 1 + T C rs75029999 13615767 + 13615747 13615787 41 GAGGAAGGGGACGATGAGTTTGACGATGAGGCCCCGGAGGA GAGGAAGGGGACGATGAGTTCGACGATGAGGCCCCGGAGGA Direct Gain 0 0.942294711396038 0 0.713752329349518 prediction 0.884589422792076 Functional Gain - NOL7 ENSG00000225921 CDS Human protein_coding chr6:13615767 chr6:13615767 synonymous SNV . 0 21 hm5C_associated_SNPs_131984 0 0 1 0 1 NOL7 chr6:13615856 5'GT 13615856 Upstream 90bp
chr7 106829851 106829851 1 + G C STAD 106829851 + 106829831 106829871 41 TAGAAGATGGTTTACTTACCGTAGAGTGTAAGCTGGACCAC TAGAAGATGGTTTACTTACCCTAGAGTGTAAGCTGGACCAC Direct Gain 0 0.942111524592546 0 0.747449815273285 prediction 0.884223049185091 Functional Gain - HBP1 ENSG00000105856 CDS Human protein_coding chr7:106829851 chr7:106829851 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_132000 0 0 1 0 1 HBP1 chr7:106829893 5'GT 106829893 Upstream 43bp
chr18 51813729 51813729 1 + T C STAD 51813729 + 51813709 51813749 41 TCTGAGAAGCACTATGGTCGTGAGAGTCGTCAGTGCCCTAT TCTGAGAAGCACTATGGTCGCGAGAGTCGTCAGTGCCCTAT Direct Gain 0 0.942037059231821 0 0.843798041343689 prediction 0.884074118463641 Functional Gain - POLI ENSG00000101751 CDS Human protein_coding chr18:51813729 chr18:51813729 synonymous SNV . 0 21 hm5C_associated_SNPs_132008 0 0 1 0 1 POLI chr18:51813781 5'GT 51813781 Upstream 53bp
chrX 151909177 151909177 1 + A C SKCM 151909177 + 151909157 151909197 41 AAGGGAAAAGGGACCCGTCAAGGAAGTTCCAGGAACAAAAG AAGGGAAAAGGGACCCGTCACGGAAGTTCCAGGAACAAAAG Direct Gain 0 0.942006219513958 0 0.499658405780792 prediction 0.884012439027917 Functional Gain - CSAG1 ENSG00000198930 CDS Human protein_coding chrX:151909177 chrX:151909177 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_132011 0 0 0 0 1 CSAG1 chrX:151909139 3'AG 151909139 Downstream 39bp
chr6 14131769 14131769 1 + G C ACC 14131769 + 14131749 14131789 41 AGTTATTGGAGGGTGGTGAAGAGAGGATGGAGACACCCCAG AGTTATTGGAGGGTGGTGAACAGAGGATGGAGACACCCCAG Direct Gain 0 0.941987505653118 0 0.929036498069763 prediction 0.883975011306236 Functional Gain - CD83 ENSG00000112149 CDS Human protein_coding chr6:14131769 chr6:14131769 nonsynonymous SNV 0.107 1 21 hm5C_associated_SNPs_132012 0 0 0 0 1 CD83 chr6:14131751 3'AG 14131751 Downstream 19bp
chr8 18067395 18067395 1 + T C rs7845127 18067395 + 18067375 18067415 41 AGCAGGAACCAGGTGAAATATAAGAGCACAGTCCTCCCAGC AGCAGGAACCAGGTGAAATACAAGAGCACAGTCCTCCCAGC Direct Gain 0 0.941973104175749 0 0.861998081207275 prediction 0.883946208351497 Functional Gain - NAT1 ENSG00000171428 UTR5 Human protein_coding chr8:18067395 chr8:18067395 . . 0 21 hm5C_associated_SNPs_132015 0 1 0 0 1 NAT1 chr8:18067464 5'GT 18067464 Upstream 70bp
chrX 102942348 102942348 1 + G C rs183588287 102942348 + 102942328 102942368 41 CGTGGTGCTGGGGTTGCTGTGTGAGCGGCCCTCGTGGCTCG CGTGGTGCTGGGGTTGCTGTCTGAGCGGCCCTCGTGGCTCG Direct Gain 0 0.941955409621086 0 0.903739929199219 prediction 0.883910819242172 Functional Gain - MORF4L2-AS1 ENSG00000231154 ncRNA_exonic Human antisense chrX:102942348 chrX:102942348 . . 0 21 hm5C_associated_SNPs_132017 0 0 1 0 1 MORF4L2-AS1 chrX:102942414 5'GT 102942414 Upstream 67bp
chr20 37214707 37214707 1 + T C UCEC 37214707 + 37214687 37214727 41 ACTCCAGTGTGTGCTTGGATTGGGAGCCCTGGAGCAAAGGC ACTCCAGTGTGTGCTTGGATCGGGAGCCCTGGAGCAAAGGC Direct Gain 0 0.941868389975085 0 0.926644146442413 prediction 0.88373677995017 Functional Gain - ADIG ENSG00000182035 CDS Human protein_coding chr20:37214707 chr20:37214707 nonsynonymous SNV 0.919 2 21 hm5C_associated_SNPs_132022 0 0 1 0 1 ADIG chr20:37214672 3'AG 37214672 Downstream 36bp
chr3 183381296 183381296 1 + T C SKCM 183381296 + 183381276 183381316 41 CGTTGGAGGATGTGAGCGAGTTGGAGGATTTAATCTTCCAT CGTTGGAGGATGTGAGCGAGCTGGAGGATTTAATCTTCCAT Direct Gain 0 0.941738974253866 0 0.478646636009216 prediction 0.883477948507731 Functional Gain - KLHL24 ENSG00000114796 CDS Human protein_coding chr3:183381296 chr3:183381296 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_132037 0 0 1 0 1 KLHL24 chr3:183381246 3'AG 183381246 Downstream 51bp
chr7 133821831 133821831 1 + T C CESC 133821831 + 133821811 133821851 41 GGCCAAAGCACTCCATCACTTGGGGCGCTCAGGCTCTGGGA GGCCAAAGCACTCCATCACTCGGGGCGCTCAGGCTCTGGGA Direct Gain 0 0.941653458224643 0 0.9885493516922 prediction 0.883306916449287 Functional Gain - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133821831 chr7:133821831 nonsynonymous SNV 0.666 3 21 hm5C_associated_SNPs_132045 0 0 0 0 2 LRGUK chr7:133821776 3'AG 133821776 Downstream 56bp
chr7 133821831 133821831 1 + T C CESC 133821831 + 133821811 133821851 41 GGCCAAAGCACTCCATCACTTGGGGCGCTCAGGCTCTGGGA GGCCAAAGCACTCCATCACTCGGGGCGCTCAGGCTCTGGGA Direct Gain 0 0.941653458224643 0 0.9885493516922 prediction 0.883306916449287 Functional Gain - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133821831 chr7:133821831 nonsynonymous SNV 0.666 3 21 hm5C_associated_SNPs_132045 0 0 0 0 2 LRGUK chr7:133821883 5'GT 133821883 Upstream 53bp
chr2 88407937 88407937 1 + G C LUSC 88407937 + 88407917 88407957 41 ACTGGGCATGGCCGTGATGCGGGCAGGGCTGACCAACTGGC ACTGGGCATGGCCGTGATGCCGGCAGGGCTGACCAACTGGC Direct Gain 0 0.94160746871013 0 0.708822786808014 prediction 0.883214937420259 Functional Gain - SMYD1 ENSG00000115593 CDS Human protein_coding chr2:88407937 chr2:88407937 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_132050 0 0 0 0 1 SMYD1 chr2:88407890 3'AG 88407890 Downstream 48bp
chr16 89949798 89949798 1 + G C LUSC 89949798 + 89949778 89949818 41 AGGATGACCCTGTGGTGAACGGGGAGAGGTCTGGCTGTGCG AGGATGACCCTGTGGTGAACCGGGAGAGGTCTGGCTGTGCG Direct Gain 0 0.941579327626849 0 0.906654953956604 prediction 0.883158655253699 Functional Gain - TCF25 ENSG00000141002 CDS Human protein_coding chr16:89949798 chr16:89949798 nonsynonymous SNV 0.668 2 21 hm5C_associated_SNPs_132051 0 0 1 0 1 TCF25 chr16:89949759 3'AG 89949759 Downstream 40bp
chr17 63223423 63223423 1 + G C LUSC 63223423 + 63223403 63223443 41 ATCAAAATGGATGTGCCCACGGGGAGCGGGACCTGCTTGAT ATCAAAATGGATGTGCCCACCGGGAGCGGGACCTGCTTGAT Direct Gain 0 0.941563893148898 0 0.919337809085846 prediction 0.883127786297796 Functional Gain - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63223423 chr17:63223423 synonymous SNV . 0 21 hm5C_associated_SNPs_132054 0 0 0 0 1 RGS9 chr17:63223393 3'AG 63223393 Downstream 31bp
chr17 46628518 46628518 1 - A G rs559346033 46628518 - 46628498 46628538 41 GGCTGTGGTGGCGGCGGCGGTGGCGGCGGCGGCGGAGGCAG GGCTGTGGTGGCGGCGGCGGCGGCGGCGGCGGCGGAGGCAG Direct Gain 0 0.94144052724744 0 0.941200375556946 prediction 0.88288105449488 Functional Gain - HOXB3 ENSG00000120093 CDS Human protein_coding chr17:46628518 chr17:46628518 synonymous SNV . 0 21 hm5C_associated_SNPs_132072 0 0 0 0 1 HOXB3 chr17:46628543 3'AG 46628543 Downstream 26bp
chr3 23930680 23930680 1 + T C rs140378760 23930680 + 23930660 23930700 41 TTGGACATATTGAAAGATAATTGGAGTCCAGCACTAACCAT TTGGACATATTGAAAGATAACTGGAGTCCAGCACTAACCAT Direct Gain 0 0.941364487652907 0 0.263780832290649 prediction 0.882728975305813 Functional Gain - UBE2E1 ENSG00000170142 CDS Human protein_coding chr3:23930680 chr3:23930680 synonymous SNV . 0 21 hm5C_associated_SNPs_132079 0 0 1 0 2 UBE2E1 chr3:23930603 3'AG 23930603 Downstream 78bp
chr3 23930680 23930680 1 + T C rs140378760 23930680 + 23930660 23930700 41 TTGGACATATTGAAAGATAATTGGAGTCCAGCACTAACCAT TTGGACATATTGAAAGATAACTGGAGTCCAGCACTAACCAT Direct Gain 0 0.941364487652907 0 0.263780832290649 prediction 0.882728975305813 Functional Gain - UBE2E1 ENSG00000170142 CDS Human protein_coding chr3:23930680 chr3:23930680 synonymous SNV . 0 21 hm5C_associated_SNPs_132079 0 0 1 0 2 UBE2E1 chr3:23930750 5'GT 23930750 Upstream 71bp
chr6 16290717 16290717 1 + T C STAD 16290717 + 16290697 16290737 41 TGGAGCAGATTTTGTCATGCTGGGAGGAATGTTTTCGGGTC TGGAGCAGATTTTGTCATGCCGGGAGGAATGTTTTCGGGTC Direct Gain 0 0.941362905344392 0 0.898127794265747 prediction 0.882725810688784 Functional Gain - GMPR ENSG00000137198 CDS Human protein_coding chr6:16290717 chr6:16290717 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_132080 0 0 0 0 1 GMPR chr6:16290693 3'AG 16290693 Downstream 25bp
chr4 78808417 78808417 1 + T C PAAD 78808417 + 78808397 78808437 41 GGAAGAAAATGGAGCTGCATTTGCAGGAGGCACTAGTCTGA GGAAGAAAATGGAGCTGCATCTGCAGGAGGCACTAGTCTGA Direct Gain 0 0.941356324772898 0 0.875155091285706 prediction 0.882712649545795 Functional Gain - MRPL1 ENSG00000169288 CDS Human protein_coding chr4:78808417 chr4:78808417 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_132083 0 0 1 0 2 MRPL1 chr4:78808374 3'AG 78808374 Downstream 44bp
chr4 78808417 78808417 1 + T C PAAD 78808417 + 78808397 78808437 41 GGAAGAAAATGGAGCTGCATTTGCAGGAGGCACTAGTCTGA GGAAGAAAATGGAGCTGCATCTGCAGGAGGCACTAGTCTGA Direct Gain 0 0.941356324772898 0 0.875155091285706 prediction 0.882712649545795 Functional Gain - MRPL1 ENSG00000169288 CDS Human protein_coding chr4:78808417 chr4:78808417 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_132083 0 0 1 0 2 MRPL1 chr4:78808445 5'GT 78808445 Upstream 29bp
chr9 130550563 130550563 1 + T C SKCM 130550563 + 130550543 130550583 41 GGTCCTGAAGCTGGCAGACTTTGGGCTGGCCCGGGCCTTCA GGTCCTGAAGCTGGCAGACTCTGGGCTGGCCCGGGCCTTCA Direct Gain 0 0.941342038894846 0 0.863568603992462 prediction 0.882684077789691 Functional Gain - CDK9 ENSG00000136807 CDS Human protein_coding chr9:130550563 chr9:130550563 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_132084 0 0 1 0 1 CDK9 chr9:130550493 3'AG 130550493 Downstream 71bp
chr17 74733003 74733003 1 - C G LUAD 74733003 - 74732983 74733023 41 GCCATGGACGGGGCCGTGCTGGACGGCCGCGAGCTGCGGGT GCCATGGACGGGGCCGTGCTCGACGGCCGCGAGCTGCGGGT Direct Gain 0 0.941238749269847 0 0.898660838603973 prediction 0.882477498539695 Functional Gain - SRSF2 ENSG00000161547 CDS Human protein_coding chr17:74733003 chr17:74733003 synonymous SNV . 0 21 hm5C_associated_SNPs_132100 0 0 1 0 1 SRSF2 chr17:74732917 5'GT 74732917 Upstream 87bp
chr17 15604513 15604513 1 + G C BLCA 15604513 + 15604493 15604533 41 TCCAAGAGAAGAGCACAGAAGAGGGAGAAGTGGCTGCTCTG TCCAAGAGAAGAGCACAGAACAGGGAGAAGTGGCTGCTCTG Direct Gain 0 0.941155291940593 0 0.886909365653992 prediction 0.882310583881187 Functional Gain - ZNF286A ENSG00000187607;ENSG00000255104 CDS Human other chr17:15604513 chr17:15604513 nonsynonymous SNV 0.988 0 21 hm5C_associated_SNPs_132106 0 0 1 0 2 ZNF286A chr17:15604466 3'AG 15604466 Downstream 48bp
chr17 15604513 15604513 1 + G C BLCA 15604513 + 15604493 15604533 41 TCCAAGAGAAGAGCACAGAAGAGGGAGAAGTGGCTGCTCTG TCCAAGAGAAGAGCACAGAACAGGGAGAAGTGGCTGCTCTG Direct Gain 0 0.941155291940593 0 0.886909365653992 prediction 0.882310583881187 Functional Gain - ZNF286A ENSG00000187607;ENSG00000255104 CDS Human other chr17:15604513 chr17:15604513 nonsynonymous SNV 0.988 0 21 hm5C_associated_SNPs_132106 0 0 1 0 2 ZNF286A chr17:15604554 5'GT 15604554 Upstream 42bp
chr10 5242286 5242286 1 + G C rs139370478 5242286 + 5242266 5242306 41 TGCAGATGGCAGTGTGAAGAGAGAAGACATATTCTACACTT TGCAGATGGCAGTGTGAAGACAGAAGACATATTCTACACTT Direct Gain 0 0.94110186425378 0 0.411038756370544 prediction 0.882203728507561 Functional Gain - AKR1C4 ENSG00000198610 CDS Human protein_coding chr10:5242286 chr10:5242286 nonsynonymous SNV 0.514 3 21 hm5C_associated_SNPs_132113 0 0 0 0 1 AKR1C4 chr10:5242311 5'GT 5242311 Upstream 26bp
chr15 30396211 30396211 1 + G C rs563231993 30396211 + 30396191 30396231 41 ACGCCCCACCGCAACATTAAGGTGAGTCGCCGGGTGGCGGC ACGCCCCACCGCAACATTAACGTGAGTCGCCGGGTGGCGGC Direct Gain 0 0.941083098170499 0 0.399671941995621 prediction 0.882166196340999 Functional Gain - ULK4P3 ENSG00000178081 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:30396211 chr15:30396211 . . 0 21 hm5C_associated_SNPs_132114 0 0 0 0 1 ULK4P3 chr15:30396211 5'GT 30396211 Upstream 1bp
chr3 58256713 58256713 1 + A C COAD 58256713 + 58256693 58256733 41 TCCACCTGGTAGGCACCTCCATGGGTGGCCAGGTGGCTGGG TCCACCTGGTAGGCACCTCCCTGGGTGGCCAGGTGGCTGGG Direct Gain 0 0.941077441035113 0 0.782002568244934 prediction 0.882154882070225 Functional Gain - ABHD6 ENSG00000163686 CDS Human protein_coding chr3:58256713 chr3:58256713 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_132115 0 0 0 0 2 ABHD6 chr3:58256659 3'AG 58256659 Downstream 55bp
chr3 58256713 58256713 1 + A C COAD 58256713 + 58256693 58256733 41 TCCACCTGGTAGGCACCTCCATGGGTGGCCAGGTGGCTGGG TCCACCTGGTAGGCACCTCCCTGGGTGGCCAGGTGGCTGGG Direct Gain 0 0.941077441035113 0 0.782002568244934 prediction 0.882154882070225 Functional Gain - ABHD6 ENSG00000163686 CDS Human protein_coding chr3:58256713 chr3:58256713 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_132115 0 0 0 0 2 ABHD6 chr3:58256791 5'GT 58256791 Upstream 79bp
chr16 89940235 89940235 1 + G C CESC 89940235 + 89940215 89940255 41 GTCCCGGGGGCGCAGGGAAGGAGGGCGTCCGAGTCAACAAC GTCCCGGGGGCGCAGGGAAGCAGGGCGTCCGAGTCAACAAC Direct Gain 0 0.941075690163266 0 0.921658635139465 prediction 0.882151380326532 Functional Gain - TCF25 ENSG00000141002 CDS Human protein_coding chr16:89940235 chr16:89940235 nonsynonymous SNV 0.074 1 21 hm5C_associated_SNPs_132116 0 0 1 0 1 TCF25 chr16:89940267 5'GT 89940267 Upstream 33bp
chr19 49912476 49912476 1 + G C BLCA 49912476 + 49912456 49912496 41 ACCTGAAGGGGCCCAGCTGAGAAGAGTGGGCTGGACCGAGC ACCTGAAGGGGCCCAGCTGACAAGAGTGGGCTGGACCGAGC Direct Gain 0 0.940998045736556 0 0.859676122665405 prediction 0.881996091473112 Functional Gain - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49912476 chr19:49912476 nonsynonymous SNV 0.218 0 21 hm5C_associated_SNPs_132126 0 0 0 0 2 CCDC155 chr19:49912453 3'AG 49912453 Downstream 24bp
chr19 49912476 49912476 1 + G C BLCA 49912476 + 49912456 49912496 41 ACCTGAAGGGGCCCAGCTGAGAAGAGTGGGCTGGACCGAGC ACCTGAAGGGGCCCAGCTGACAAGAGTGGGCTGGACCGAGC Direct Gain 0 0.940998045736556 0 0.859676122665405 prediction 0.881996091473112 Functional Gain - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49912476 chr19:49912476 nonsynonymous SNV 0.218 0 21 hm5C_associated_SNPs_132126 0 0 0 0 2 CCDC155 chr19:49912540 5'GT 49912540 Upstream 65bp
chr10 30748334 30748334 1 + G C LUSC 30748334 + 30748314 30748354 41 AGGCCCTGAACCCGCCCAGAGAGGATCAGCCACGCTGTCAG AGGCCCTGAACCCGCCCAGACAGGATCAGCCACGCTGTCAG Direct Gain 0 0.940996807911666 0 0.851722180843353 prediction 0.881993615823331 Functional Gain - MAP3K8 ENSG00000107968 CDS Human protein_coding chr10:30748334 chr10:30748334 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_132127 0 0 0 0 1 MAP3K8 chr10:30748430 5'GT 30748430 Upstream 97bp
chr3 100148663 100148663 1 + G C LUAD 100148663 + 100148643 100148683 41 AGCTGGAGAGAGGAGGATCAGAGAGGACTCCGGGAACGCCA AGCTGGAGAGAGGAGGATCACAGAGGACTCCGGGAACGCCA Direct Gain 0 0.940943633979466 0 0.762510657310486 prediction 0.881887267958932 Functional Gain - LNP1 ENSG00000206535 CDS Human protein_coding chr3:100148663 chr3:100148663 nonsynonymous SNV 0.964 1 21 hm5C_associated_SNPs_132135 0 0 1 1 1 LNP1 chr3:100148729 5'GT 100148729 Upstream 67bp
chr1 230804444 230804444 1 + T C UCEC 230804444 + 230804424 230804464 41 CCCTTTTGACTGGACAAATTTTGGAGAGAATTGCCACAGAA CCCTTTTGACTGGACAAATTCTGGAGAGAATTGCCACAGAA Direct Gain 0 0.940885501547538 0 0.802412033081055 prediction 0.881771003095077 Functional Gain - COG2 ENSG00000135775 CDS Human protein_coding chr1:230804444 chr1:230804444 synonymous SNV . 0 21 hm5C_associated_SNPs_132140 0 0 1 0 2 COG2 chr1:230804422 3'AG 230804422 Downstream 23bp
chr1 230804444 230804444 1 + T C UCEC 230804444 + 230804424 230804464 41 CCCTTTTGACTGGACAAATTTTGGAGAGAATTGCCACAGAA CCCTTTTGACTGGACAAATTCTGGAGAGAATTGCCACAGAA Direct Gain 0 0.940885501547538 0 0.802412033081055 prediction 0.881771003095077 Functional Gain - COG2 ENSG00000135775 CDS Human protein_coding chr1:230804444 chr1:230804444 synonymous SNV . 0 21 hm5C_associated_SNPs_132140 0 0 1 0 2 COG2 chr1:230804530 5'GT 230804530 Upstream 87bp
chr12 124155867 124155867 1 + T C UCEC 124155867 + 124155847 124155887 41 GAGGCTTCTGTGGGGGGACCTGGGTGTGTACGGCGCGGCAG GAGGCTTCTGTGGGGGGACCCGGGTGTGTACGGCGCGGCAG Direct Gain 0 0.9408723219226 0 0.943708181381226 prediction 0.881744643845201 Functional Gain - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124155867 chr12:124155867 nonsynonymous SNV 0.848 1 21 hm5C_associated_SNPs_132142 0 0 1 0 1 TCTN2 chr12:124155869 5'GT 124155869 Upstream 3bp
chr11 111386809 111386809 1 + G C BLCA 111386809 + 111386789 111386829 41 CCCTAAAGATACAGGAATCTGAGGAGAAAGTAAAGTATCTC CCCTAAAGATACAGGAATCTCAGGAGAAAGTAAAGTATCTC Direct Gain 0 0.940869290163858 0 0.814251899719238 prediction 0.881738580327717 Functional Gain - C11orf88 ENSG00000183644 CDS Human protein_coding chr11:111386809 chr11:111386809 nonsynonymous SNV 0.946 1 21 hm5C_associated_SNPs_132143 0 0 0 0 2 C11orf88 chr11:111386765 3'AG 111386765 Downstream 45bp
chr11 111386809 111386809 1 + G C BLCA 111386809 + 111386789 111386829 41 CCCTAAAGATACAGGAATCTGAGGAGAAAGTAAAGTATCTC CCCTAAAGATACAGGAATCTCAGGAGAAAGTAAAGTATCTC Direct Gain 0 0.940869290163858 0 0.814251899719238 prediction 0.881738580327717 Functional Gain - C11orf88 ENSG00000183644 CDS Human protein_coding chr11:111386809 chr11:111386809 nonsynonymous SNV 0.946 1 21 hm5C_associated_SNPs_132143 0 0 0 0 2 C11orf88 chr11:111386835 5'GT 111386835 Upstream 27bp
chr5 147499606 147499606 1 + A C HNSC 147499606 + 147499586 147499626 41 GTTTAGAAGCCAAATGAAAAATGGAAAACTCATCTGCACTC GTTTAGAAGCCAAATGAAAACTGGAAAACTCATCTGCACTC Direct Gain 0 0.940823057081605 0 0.782067537307739 prediction 0.881646114163211 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147499606 chr5:147499606 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_132146 0 0 0 0 2 SPINK5 chr5:147499572 3'AG 147499572 Downstream 35bp
chr5 147499606 147499606 1 + A C HNSC 147499606 + 147499586 147499626 41 GTTTAGAAGCCAAATGAAAAATGGAAAACTCATCTGCACTC GTTTAGAAGCCAAATGAAAACTGGAAAACTCATCTGCACTC Direct Gain 0 0.940823057081605 0 0.782067537307739 prediction 0.881646114163211 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147499606 chr5:147499606 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_132146 0 0 0 0 2 SPINK5 chr5:147499699 5'GT 147499699 Upstream 94bp
chr11 60701070 60701070 1 + G C rs545863764 60701070 + 60701050 60701090 41 AAGGAGAGCCGGGGCGCCCGGGGGGTGCGAGTGGACTTCTG AAGGAGAGCCGGGGCGCCCGCGGGGTGCGAGTGGACTTCTG Direct Gain 0 0.940791026888849 0 0.95235276222229 prediction 0.881582053777697 Functional Gain - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60701070 chr11:60701070 synonymous SNV . 0 21 hm5C_associated_SNPs_132150 0 0 0 0 1 TMEM132A chr11:60701014 3'AG 60701014 Downstream 57bp
chr2 152266473 152266473 1 + T C rs2290368 152266473 + 152266453 152266493 41 CGTGAGTAAACAGCCGGAGCTGGGAAAGTCGAGCTCTGGCA CGTGAGTAAACAGCCGGAGCCGGGAAAGTCGAGCTCTGGCA Direct Gain 0 0.94074724179302 0 0.887060642242432 prediction 0.881494483586041 Functional Gain - RIF1 ENSG00000080345 CDS Human protein_coding chr2:152266473 chr2:152266473 unknown . 0 21 hm5C_associated_SNPs_132154 0 0 1 0 1 RIF1 chr2:152266547 5'GT 152266547 Upstream 75bp
chr6 79944355 79944355 1 - T G rs9361504 79944355 - 79944335 79944375 41 CTGCGCGTGAGCAGCTGCAGAGGCAGAGGCAGCATCCAGCG CTGCGCGTGAGCAGCTGCAGCGGCAGAGGCAGCATCCAGCG Direct Gain 0 0.940728854646818 0 0.426091581583023 prediction 0.881457709293635 Functional Gain - HMGN3-AS1 ENSG00000270362 ncRNA_exonic Human protein_coding chr6:79944355 chr6:79944355 . . 0 21 hm5C_associated_SNPs_132156 0 0 1 0 1 HMGN3 chr6:79944263 5'GT 79944263 Upstream 93bp
chr1 171080001 171080001 1 + T C LAML 171080001 + 171079981 171080021 41 GTCTGGGACAATGGTTATCCTTGGGACATGCTGCTCGTCAC GTCTGGGACAATGGTTATCCCTGGGACATGCTGCTCGTCAC Direct Gain 0 0.940701922445142 0 0.862495899200439 prediction 0.881403844890283 Functional Gain - FMO3 ENSG00000007933 CDS Human protein_coding chr1:171080001 chr1:171080001 synonymous SNV . 0 21 hm5C_associated_SNPs_132158 0 0 0 0 1 FMO3 chr1:171079939 3'AG 171079939 Downstream 63bp
chr1 203015095 203015095 1 + A C rs111721656 203015095 + 203015075 203015115 41 TGGAGAATGAGCTGGCCAACAAGGAGTCCCTGCACCGCCAG TGGAGAATGAGCTGGCCAACCAGGAGTCCCTGCACCGCCAG Direct Gain 0 0.940689641277371 0 0.945356965065002 prediction 0.881379282554742 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203015095 chr1:203015095 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_132159 0 0 1 0 1 PPFIA4 chr1:203015115 5'GT 203015115 Upstream 21bp
chr1 206327510 206327510 1 + T C rs61742539 206327510 + 206327490 206327530 41 GCGGGGAGCGAGCTGATTTTTGGAGGCTACGACCACTCCCA GCGGGGAGCGAGCTGATTTTCGGAGGCTACGACCACTCCCA Direct Gain 0 0.940680703979371 0 0.970003843307495 prediction 0.881361407958742 Functional Gain - CTSE ENSG00000196188 CDS Human protein_coding chr1:206327510 chr1:206327510 synonymous SNV . 0 21 hm5C_associated_SNPs_132160 0 0 0 0 2 CTSE chr1:206327474 3'AG 206327474 Downstream 37bp
chr1 206327510 206327510 1 + T C rs61742539 206327510 + 206327490 206327530 41 GCGGGGAGCGAGCTGATTTTTGGAGGCTACGACCACTCCCA GCGGGGAGCGAGCTGATTTTCGGAGGCTACGACCACTCCCA Direct Gain 0 0.940680703979371 0 0.970003843307495 prediction 0.881361407958742 Functional Gain - CTSE ENSG00000196188 CDS Human protein_coding chr1:206327510 chr1:206327510 synonymous SNV . 0 21 hm5C_associated_SNPs_132160 0 0 0 0 2 CTSE chr1:206327596 5'GT 206327596 Upstream 87bp
chr9 82335048 82335048 1 + T C HNSC 82335048 + 82335028 82335068 41 AAGCCAGTACTTTGTCCATTTGGGACCTGGCGGCTCCAACC AAGCCAGTACTTTGTCCATTCGGGACCTGGCGGCTCCAACC Direct Gain 0 0.940619941738554 0 0.953619778156281 prediction 0.881239883477108 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82335048 chr9:82335048 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_132168 0 0 1 0 1 TLE4 chr9:82334961 3'AG 82334961 Downstream 88bp
chr4 206477 206477 1 + T C ESCA 206477 + 206457 206497 41 CCTCAGGGAGGCCTCAGTGATTCGGCCACAGCCTCAGCCTC CCTCAGGGAGGCCTCAGTGACTCGGCCACAGCCTCAGCCTC Direct Gain 0 0.940619135876107 0 0.699337959289551 prediction 0.881238271752213 Functional Gain - ZNF876P ENSG00000198155 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr4:206477 chr4:206477 . . 0 21 hm5C_associated_SNPs_132169 0 0 0 0 1 ZNF876P chr4:206570 5'GT 206570 Upstream 94bp
chr19 30433560 30433560 1 + G C PAAD 30433560 + 30433540 30433580 41 ATGTGGCGCGGCTGCGCGAGGAGCAGGAAAAGGTAACTAGC ATGTGGCGCGGCTGCGCGAGCAGCAGGAAAAGGTAACTAGC Direct Gain 0 0.940618027510569 0 0.505591750144958 prediction 0.881236055021139 Functional Gain - URI1 ENSG00000105176 CDS Human protein_coding chr19:30433560 chr19:30433560 nonsynonymous SNV 0.994 0 21 hm5C_associated_SNPs_132170 0 0 1 0 1 URI1 chr19:30433571 5'GT 30433571 Upstream 12bp
chr11 64087313 64087313 1 + T C COAD 64087313 + 64087293 64087333 41 GGTGTGCTGTTTGGAGTTCCTGGGGCCTTCACCCCTGGATG GGTGTGCTGTTTGGAGTTCCCGGGGCCTTCACCCCTGGATG Direct Gain 0 0.940600773638281 0 0.924065232276917 prediction 0.881201547276563 Functional Gain - PRDX5 ENSG00000126432 CDS Human protein_coding chr11:64087313 chr11:64087313 synonymous SNV . 0 21 hm5C_associated_SNPs_132173 0 0 1 1 1 PRDX5 chr11:64087340 5'GT 64087340 Upstream 28bp
chr2 172600667 172600667 1 + T C UVM 172600667 + 172600647 172600687 41 GTGTGGATGGCATGGGGAGATTGGATTTGTGGAATCTCAAT GTGTGGATGGCATGGGGAGACTGGATTTGTGGAATCTCAAT Direct Gain 0 0.940543291205002 0 0.717150628566742 prediction 0.881086582410005 Functional Gain - DYNC1I2 ENSG00000077380 CDS Human protein_coding chr2:172600667 chr2:172600667 synonymous SNV . 0 21 hm5C_associated_SNPs_132179 0 0 0 0 1 DYNC1I2 chr2:172600699 5'GT 172600699 Upstream 33bp
chr7 2394746 2394746 1 + T C rs9690787 2394746 + 2394726 2394766 41 TCGCGGAGGCCGGGCCGGAGTCCGAGGTGAGGACCGAGCCG TCGCGGAGGCCGGGCCGGAGCCCGAGGTGAGGACCGAGCCG Direct Gain 0 0.940483991834373 0 0.53077095746994 prediction 0.880967983668747 Functional Gain - EIF3B ENSG00000106263 CDS Human protein_coding chr7:2394746 chr7:2394746 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_132181 0 0 1 0 1 EIF3B chr7:2394751 5'GT 2394751 Upstream 6bp
chr20 62896714 62896714 1 + G C LUSC 62896714 + 62896694 62896734 41 GTGGGGCTGGCGTGCAGAAAGAGCATGAAGAGTACATGAAG GTGGGGCTGGCGTGCAGAAACAGCATGAAGAGTACATGAAG Direct Gain 0 0.940369050579592 0 0.426568895578384 prediction 0.880738101159184 Functional Gain - PCMTD2 ENSG00000203880 CDS Human protein_coding chr20:62896714 chr20:62896714 nonsynonymous SNV 0.961 1 21 hm5C_associated_SNPs_132190 0 0 1 0 1 PCMTD2 chr20:62896782 5'GT 62896782 Upstream 69bp
chr19 4352936 4352936 1 + G C LUSC 4352936 + 4352916 4352956 41 AGGAGGAGTTGCTGATGGAAGAGGAGGAGGAGGACGTTCTG AGGAGGAGTTGCTGATGGAACAGGAGGAGGAGGACGTTCTG Direct Gain 0 0.940288645579303 0 0.885452270507812 prediction 0.880577291158605 Functional Gain - MPND ENSG00000008382 CDS Human protein_coding chr19:4352936 chr19:4352936 nonsynonymous SNV 0.976 0 21 hm5C_associated_SNPs_132197 0 0 0 0 2 MPND chr19:4352894 3'AG 4352894 Downstream 43bp
chr19 4352936 4352936 1 + G C LUSC 4352936 + 4352916 4352956 41 AGGAGGAGTTGCTGATGGAAGAGGAGGAGGAGGACGTTCTG AGGAGGAGTTGCTGATGGAACAGGAGGAGGAGGACGTTCTG Direct Gain 0 0.940288645579303 0 0.885452270507812 prediction 0.880577291158605 Functional Gain - MPND ENSG00000008382 CDS Human protein_coding chr19:4352936 chr19:4352936 nonsynonymous SNV 0.976 0 21 hm5C_associated_SNPs_132197 0 0 0 0 2 MPND chr19:4353026 5'GT 4353026 Upstream 91bp
chr8 124820546 124820546 1 + T C STAD 124820546 + 124820526 124820566 41 GCTTCTGGCTCAGATGTAAATGGGAGTACAGAGTCATTTGA GCTTCTGGCTCAGATGTAAACGGGAGTACAGAGTCATTTGA Direct Gain 0 0.940114879996705 0 0.89301061630249 prediction 0.880229759993409 Functional Gain - FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124820546 chr8:124820546 synonymous SNV . 0 21 hm5C_associated_SNPs_132213 0 0 1 0 2 FAM91A1 chr8:124820512 3'AG 124820512 Downstream 35bp
chr8 124820546 124820546 1 + T C STAD 124820546 + 124820526 124820566 41 GCTTCTGGCTCAGATGTAAATGGGAGTACAGAGTCATTTGA GCTTCTGGCTCAGATGTAAACGGGAGTACAGAGTCATTTGA Direct Gain 0 0.940114879996705 0 0.89301061630249 prediction 0.880229759993409 Functional Gain - FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124820546 chr8:124820546 synonymous SNV . 0 21 hm5C_associated_SNPs_132213 0 0 1 0 2 FAM91A1 chr8:124820616 5'GT 124820616 Upstream 71bp
chr2 56411817 56411817 1 - C G rs35587531 56411817 - 56411797 56411837 41 GGACGAGCCGGCCGGGGCTGGGGAACAACTTTCCGCCGCCG GGACGAGCCGGCCGGGGCTGCGGAACAACTTTCCGCCGCCG Direct Gain 0 0.940100756096241 0 0.923818051815033 prediction 0.880201512192482 Functional Gain - CCDC85A ENSG00000055813 CDS Human antisense chr2:56411817 chr2:56411817 nonsynonymous SNV 0.354 0 21 hm5C_associated_SNPs_132214 0 0 0 0 1 LOC100129434 chr2:56411759 5'GT 56411759 Upstream 59bp
chr15 40757594 40757594 1 + G C BLCA 40757594 + 40757574 40757614 41 AGAACAGTGTGGCCTGCATTGAGGAGAAGTGCTATGTGCTG AGAACAGTGTGGCCTGCATTCAGGAGAAGTGCTATGTGCTG Direct Gain 0 0.940044237419246 0 0.937997817993164 prediction 0.880088474838493 Functional Gain - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40757594 chr15:40757594 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_132220 0 0 1 0 3 BAHD1 chr15:40757534 3'AG 40757534 Downstream 61bp
chr15 40757594 40757594 1 + G C BLCA 40757594 + 40757574 40757614 41 AGAACAGTGTGGCCTGCATTGAGGAGAAGTGCTATGTGCTG AGAACAGTGTGGCCTGCATTCAGGAGAAGTGCTATGTGCTG Direct Gain 0 0.940044237419246 0 0.937997817993164 prediction 0.880088474838493 Functional Gain - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40757594 chr15:40757594 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_132220 0 0 1 0 3 BAHD1 chr15:40757543 3'AG 40757543 Downstream 52bp
chr15 40757594 40757594 1 + G C BLCA 40757594 + 40757574 40757614 41 AGAACAGTGTGGCCTGCATTGAGGAGAAGTGCTATGTGCTG AGAACAGTGTGGCCTGCATTCAGGAGAAGTGCTATGTGCTG Direct Gain 0 0.940044237419246 0 0.937997817993164 prediction 0.880088474838493 Functional Gain - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40757594 chr15:40757594 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_132220 0 0 1 0 3 BAHD1 chr15:40757634 5'GT 40757634 Upstream 41bp
chr6 167585684 167585684 1 + G C CESC 167585684 + 167585664 167585704 41 CCAAGGAGGGCACCCACCCAGAGGACCCGTGCCCGGGAGCT CCAAGGAGGGCACCCACCCACAGGACCCGTGCCCGGGAGCT Direct Gain 0 0.940016267659323 0 0.938189387321472 prediction 0.880032535318646 Functional Gain - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167585684 chr6:167585684 nonsynonymous SNV 0.001 3 21 hm5C_associated_SNPs_132221 0 0 0 0 2 TCP10L2 chr6:167585632 3'AG 167585632 Downstream 53bp
chr6 167585684 167585684 1 + G C CESC 167585684 + 167585664 167585704 41 CCAAGGAGGGCACCCACCCAGAGGACCCGTGCCCGGGAGCT CCAAGGAGGGCACCCACCCACAGGACCCGTGCCCGGGAGCT Direct Gain 0 0.940016267659323 0 0.938189387321472 prediction 0.880032535318646 Functional Gain - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167585684 chr6:167585684 nonsynonymous SNV 0.001 3 21 hm5C_associated_SNPs_132221 0 0 0 0 2 TCP10L2 chr6:167585776 5'GT 167585776 Upstream 93bp
chr19 2987056 2987056 1 + G C BRCA 2987056 + 2987036 2987076 41 CCCTGCAGGAGTCGAGCTTTGAGGACATCATGGCCACCAGG CCCTGCAGGAGTCGAGCTTTCAGGACATCATGGCCACCAGG Direct Gain 0 0.939941326476997 0 0.914857506752014 prediction 0.879882652953995 Functional Gain - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2987056 chr19:2987056 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_132226 0 0 0 0 1 TLE6 chr19:2986981 3'AG 2986981 Downstream 76bp
chr11 57135903 57135903 1 + T C UCEC 57135903 + 57135883 57135923 41 TGTGGCGGCCTTTACTTCTGTGGGAGTGGTGAGTTCAGCCC TGTGGCGGCCTTTACTTCTGCGGGAGTGGTGAGTTCAGCCC Direct Gain 0 0.939878030191614 0 0.866982519626617 prediction 0.879756060383227 Functional Gain - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57135903 chr11:57135903 nonsynonymous SNV 0.991 3 21 hm5C_associated_SNPs_132231 0 0 0 0 2 P2RX3 chr11:57135845 3'AG 57135845 Downstream 59bp
chr11 57135903 57135903 1 + T C UCEC 57135903 + 57135883 57135923 41 TGTGGCGGCCTTTACTTCTGTGGGAGTGGTGAGTTCAGCCC TGTGGCGGCCTTTACTTCTGCGGGAGTGGTGAGTTCAGCCC Direct Gain 0 0.939878030191614 0 0.866982519626617 prediction 0.879756060383227 Functional Gain - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57135903 chr11:57135903 nonsynonymous SNV 0.991 3 21 hm5C_associated_SNPs_132231 0 0 0 0 2 P2RX3 chr11:57135910 5'GT 57135910 Upstream 8bp
chr1 3542012 3542012 1 + G C LUAD 3542012 + 3541992 3542032 41 GCAGCATCGAGCAGGCAGTGGAGGAGATCCGCGTGGTGGTG GCAGCATCGAGCAGGCAGTGCAGGAGATCCGCGTGGTGGTG Direct Gain 0 0.939709904119136 0 0.845305442810059 prediction 0.879419808238271 Functional Gain - TPRG1L ENSG00000158109 CDS Human protein_coding chr1:3542012 chr1:3542012 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_132242 0 0 0 0 2 TPRG1L chr1:3541988 3'AG 3541988 Downstream 25bp
chr1 3542012 3542012 1 + G C LUAD 3542012 + 3541992 3542032 41 GCAGCATCGAGCAGGCAGTGGAGGAGATCCGCGTGGTGGTG GCAGCATCGAGCAGGCAGTGCAGGAGATCCGCGTGGTGGTG Direct Gain 0 0.939709904119136 0 0.845305442810059 prediction 0.879419808238271 Functional Gain - TPRG1L ENSG00000158109 CDS Human protein_coding chr1:3542012 chr1:3542012 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_132242 0 0 0 0 2 TPRG1L chr1:3542079 5'GT 3542079 Upstream 68bp
chr17 37819124 37819124 1 + T C UCEC 37819124 + 37819104 37819144 41 GTTTGAATTTGCCTTTCACCTGCGACAGCGCATCAGCGAGC GTTTGAATTTGCCTTTCACCCGCGACAGCGCATCAGCGAGC Direct Gain 0 0.939586339711337 0 0.768528938293457 prediction 0.879172679422673 Functional Gain - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37819124 chr17:37819124 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_132255 0 0 1 1 1 STARD3 chr17:37819057 3'AG 37819057 Downstream 68bp
chr17 41166208 41166208 1 + G C LUSC 41166208 + 41166188 41166228 41 CCGGAGCTGCATGACGTCCTGGAGATCCACTTCCAGAAGCC CCGGAGCTGCATGACGTCCTCGAGATCCACTTCCAGAAGCC Direct Gain 0 0.939512973202039 0 0.858582019805908 prediction 0.879025946404077 Functional Gain - IFI35 ENSG00000068079 CDS Human protein_coding chr17:41166208 chr17:41166208 synonymous SNV . 0 21 hm5C_associated_SNPs_132260 0 0 1 0 1 IFI35 chr17:41166125 3'AG 41166125 Downstream 84bp
chr16 28847651 28847651 1 + T C COAD 28847651 + 28847631 28847671 41 GCACCTGTCTGTGAAGTATGTAGGGTGGGCAGAAGCCACAG GCACCTGTCTGTGAAGTATGCAGGGTGGGCAGAAGCCACAG Direct Gain 0 0.939501461617796 0 0.887126505374908 prediction 0.879002923235593 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28847651 chr16:28847651 synonymous SNV . 0 21 hm5C_associated_SNPs_132263 0 0 1 0 1 ATXN2L chr16:28847647 3'AG 28847647 Downstream 5bp
chr11 60557863 60557863 1 + T C rs144089314 60557863 + 60557843 60557883 41 GTGCTAGGGGGCTCCCATCATGGCAAGTCCTCAGCCCAGTC GTGCTAGGGGGCTCCCATCACGGCAAGTCCTCAGCCCAGTC Direct Gain 0 0.939471402374544 0 0.88886034488678 prediction 0.878942804749089 Functional Gain - MS4A10 ENSG00000172689 CDS Human protein_coding chr11:60557863 chr11:60557863 nonsynonymous SNV 0.017 0 21 hm5C_associated_SNPs_132265 0 0 0 0 1 MS4A10 chr11:60557787 3'AG 60557787 Downstream 77bp